Sender: LSF System <lsf@node1544>
Subject: Job 4422745: <iteration_216246> Done

Job <iteration_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246> was used as the working directory.
Started at Thu Oct 25 07:47:21 2012
Results reported at Thu Oct 25 07:47:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
echo starting
ls iteration*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter or gather jobs failed;
echo ${return_code} > exited;
exit 1;
fi
ls exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo previous iteration failed;
echo ${return_code} > exited;
exit 1;
fi
/xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 216246 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
return_code=$?
if [ ${return_code} -ne 0 ]; then
echo iterator failed ${return_code};
echo ${return_code} > exited;
exit ${return_code};
fi
cat iteration1/jobSubmissions.txt >> jobSubmissions.txt
rm -f iteration1/jobSubmissions.txt
echo '*** Scatter Gather stdandard out:' 2>&1
cat iteration1/scatter-gather.out.txt 2>&1
rm -f iteration1/scatter-gather.out.txt 2>&1
echo '*** Scatter Gather stdandard err:' 2>&1
cat iteration1/scatter-gather.err.txt 2>&1
rm -f iteration1/scatter-gather.err.txt 2>&1
ls iteration1/sg-next-iteration.txt 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
rm -f iteration1/sg-next-iteration.txt
else
rm -f scatterGatherParameters.txt
rm -f programParameters.txt
mv iteration1/* /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246
rmdir iteration*
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      1.22 sec.
    Max Memory :         3 MB
    Max Swap   :        39 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:

starting
ls: iteration*/exited: No such file or directory
ls: exited: No such file or directory
Running scatter-gather-iterator with the following args: /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 216246 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
Finished in 1 iterations
*** Scatter Gather stdandard out:
Sender: LSF System <lsf@node1650>
Subject: Job 4422740: <gather_216246> Done

Job <gather_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1> was used as the working directory.
Started at Thu Oct 25 01:42:54 2012
Results reported at Thu Oct 25 07:47:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
ls scatter.*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter jobs failed;
echo ${return_code} > exited;
exit 1;
fi
if [ `ls -1 scatter.*/success | wc -l` -ne 200 ]; then
echo expected result files missing, try rerunning;
echo 1 > exited;
exit 1;
fi
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 0  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
echo gather failed;
echo ${return_code} > exited;
exit ${return_code};
fi
rm -f prepareResults.out
echo '*** Prepare stdandard out:' 2>&1
cat prepare.out 2>&1
rm -f prepare.out 2>&1
echo '*** Prepare stdandard err:' 2>&1
cat prepare.err 2>&1
rm -f prepare.err 2>&1
echo '*** Scatter stdandard out:' 2>&1
cat scatter.*/scatter.out 2>&1
rm -f scatter.*/scatter.out 2>&1
echo '*** Scatter stdandard err:' 2>&1
cat scatter.*/scatter.err 2>&1
rm -f scatter.*/scatter.err 2>&1
echo '*** Scatter retry log:'
head scatter.*.tries
echo
rm -f scatter.*.tries
rm -f scatter.*/success
rm -f scatter.*/java.opts
rmdir scatter.*
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  18468.27 sec.
    Max Memory :      6689 MB
    Max Swap   :      7686 MB

    Max Processes  :         9
    Max Threads    :        60

The output (if any) follows:

ls: scatter.*/exited: No such file or directory
fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
0
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 0
                            is_scatter: 0
                             is_gather: 1

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Saved ./LUAD.mutation_filtering_report.txt
Writing coverage to ./LUAD.per_exon.coverage.txt
HUGE STRUCT: SAVING CHUNK 1/5
  [save_struct] 62/239 63/239 64/239 65/239 66/239 67/239 68/239 69/239 70/239 71/239 72/239 73/239 74/239 75/239 76/239 77/239 78/239 79/239 80/239 81/239 82/239 83/239 84/239 85/239 86/239 87/239 88/239 89/239 90/239 91/239 92/239 93/239 94/239 95/239 96/239 97/239 98/239 99/239 100/239 101/239 102/239 103/239 104/239 105/239 106/239 107/239 108/239 109/239 110/239 111/239 112/239 113/239 114/239 115/239 116/239 117/239 118/239 119/239 120/239 121/239 122/239 123/239 124/239 125/239 126/239 127/239 128/239 129/239 130/239 131/239 132/239 133/239 134/239 135/239 136/239 137/239 138/239 139/239 140/239 141/239 142/239 143/239 144/239 145/239 146/239 147/239 148/239 149/239 150/239 151/239 152/239 153/239 154/239 155/239 156/239 157/239 158/239 159/239 160/239 161/239 162/239 163/239 164/239 165/239 166/239 167/239 168/239 169/239 170/239 171/239 172/239 173/239 174/239 175/239 176/239 177/239 178/239 179/239 180/239 181/239 182/239 183/239 184/239 185/239 186/239 187/239 188/239 189/239 190/239 191/239 192/239 193/239 194/239 195/239 196/239 197/239 198/239 199/239 200/239 201/239 202/239 203/239 204/239 205/239 206/239 207/239 208/239 209/239 210/239 211/239 212/239 213/239 214/239 215/239 216/239 217/239 218/239 219/239 220/239 221/239 222/239 223/239 224/239 225/239 226/239 227/239 228/239 229/239 230/239 231/239 232/239 233/239 234/239 235/239 236/239 237/239 238/239 239/239  [collapse]
HUGE STRUCT: SAVING CHUNK 2/5
  [save_struct] 60/239 61/239 62/239 63/239 64/239 65/239 66/239 67/239 68/239 69/239 70/239 71/239 72/239 73/239 74/239 75/239 76/239 77/239 78/239 79/239 80/239 81/239 82/239 83/239 84/239 85/239 86/239 87/239 88/239 89/239 90/239 91/239 92/239 93/239 94/239 95/239 96/239 97/239 98/239 99/239 100/239 101/239 102/239 103/239 104/239 105/239 106/239 107/239 108/239 109/239 110/239 111/239 112/239 113/239 114/239 115/239 116/239 117/239 118/239 119/239 120/239 121/239 122/239 123/239 124/239 125/239 126/239 127/239 128/239 129/239 130/239 131/239 132/239 133/239 134/239 135/239 136/239 137/239 138/239 139/239 140/239 141/239 142/239 143/239 144/239 145/239 146/239 147/239 148/239 149/239 150/239 151/239 152/239 153/239 154/239 155/239 156/239 157/239 158/239 159/239 160/239 161/239 162/239 163/239 164/239 165/239 166/239 167/239 168/239 169/239 170/239 171/239 172/239 173/239 174/239 175/239 176/239 177/239 178/239 179/239 180/239 181/239 182/239 183/239 184/239 185/239 186/239 187/239 188/239 189/239 190/239 191/239 192/239 193/239 194/239 195/239 196/239 197/239 198/239 199/239 200/239 201/239 202/239 203/239 204/239 205/239 206/239 207/239 208/239 209/239 210/239 211/239 212/239 213/239 214/239 215/239 216/239 217/239 218/239 219/239 220/239 221/239 222/239 223/239 224/239 225/239 226/239 227/239 228/239 229/239 230/239 231/239 232/239 233/239 234/239 235/239 236/239 237/239 238/239 239/239  [collapse]
HUGE STRUCT: SAVING CHUNK 3/5
  [save_struct] 64/239 65/239 66/239 67/239 68/239 69/239 70/239 71/239 72/239 73/239 74/239 75/239 76/239 77/239 78/239 79/239 80/239 81/239 82/239 83/239 84/239 85/239 86/239 87/239 88/239 89/239 90/239 91/239 92/239 93/239 94/239 95/239 96/239 97/239 98/239 99/239 100/239 101/239 102/239 103/239 104/239 105/239 106/239 107/239 108/239 109/239 110/239 111/239 112/239 113/239 114/239 115/239 116/239 117/239 118/239 119/239 120/239 121/239 122/239 123/239 124/239 125/239 126/239 127/239 128/239 129/239 130/239 131/239 132/239 133/239 134/239 135/239 136/239 137/239 138/239 139/239 140/239 141/239 142/239 143/239 144/239 145/239 146/239 147/239 148/239 149/239 150/239 151/239 152/239 153/239 154/239 155/239 156/239 157/239 158/239 159/239 160/239 161/239 162/239 163/239 164/239 165/239 166/239 167/239 168/239 169/239 170/239 171/239 172/239 173/239 174/239 175/239 176/239 177/239 178/239 179/239 180/239 181/239 182/239 183/239 184/239 185/239 186/239 187/239 188/239 189/239 190/239 191/239 192/239 193/239 194/239 195/239 196/239 197/239 198/239 199/239 200/239 201/239 202/239 203/239 204/239 205/239 206/239 207/239 208/239 209/239 210/239 211/239 212/239 213/239 214/239 215/239 216/239 217/239 218/239 219/239 220/239 221/239 222/239 223/239 224/239 225/239 226/239 227/239 228/239 229/239 230/239 231/239 232/239 233/239 234/239 235/239 236/239 237/239 238/239 239/239  [collapse]
HUGE STRUCT: SAVING CHUNK 4/5
  [save_struct] 66/239 67/239 68/239 69/239 70/239 71/239 72/239 73/239 74/239 75/239 76/239 77/239 78/239 79/239 80/239 81/239 82/239 83/239 84/239 85/239 86/239 87/239 88/239 89/239 90/239 91/239 92/239 93/239 94/239 95/239 96/239 97/239 98/239 99/239 100/239 101/239 102/239 103/239 104/239 105/239 106/239 107/239 108/239 109/239 110/239 111/239 112/239 113/239 114/239 115/239 116/239 117/239 118/239 119/239 120/239 121/239 122/239 123/239 124/239 125/239 126/239 127/239 128/239 129/239 130/239 131/239 132/239 133/239 134/239 135/239 136/239 137/239 138/239 139/239 140/239 141/239 142/239 143/239 144/239 145/239 146/239 147/239 148/239 149/239 150/239 151/239 152/239 153/239 154/239 155/239 156/239 157/239 158/239 159/239 160/239 161/239 162/239 163/239 164/239 165/239 166/239 167/239 168/239 169/239 170/239 171/239 172/239 173/239 174/239 175/239 176/239 177/239 178/239 179/239 180/239 181/239 182/239 183/239 184/239 185/239 186/239 187/239 188/239 189/239 190/239 191/239 192/239 193/239 194/239 195/239 196/239 197/239 198/239 199/239 200/239 201/239 202/239 203/239 204/239 205/239 206/239 207/239 208/239 209/239 210/239 211/239 212/239 213/239 214/239 215/239 216/239 217/239 218/239 219/239 220/239 221/239 222/239 223/239 224/239 225/239 226/239 227/239 228/239 229/239 230/239 231/239 232/239 233/239 234/239 235/239 236/239 237/239 238/239 239/239  [collapse]
HUGE STRUCT: SAVING CHUNK 5/5
  [save_struct] 139/239 140/239 141/239 142/239 143/239 144/239 145/239 146/239 147/239 148/239 149/239 150/239 151/239 152/239 153/239 154/239 155/239 156/239 157/239 158/239 159/239 160/239 161/239 162/239 163/239 164/239 165/239 166/239 167/239 168/239 169/239 170/239 171/239 172/239 173/239 174/239 175/239 176/239 177/239 178/239 179/239 180/239 181/239 182/239 183/239 184/239 185/239 186/239 187/239 188/239 189/239 190/239 191/239 192/239 193/239 194/239 195/239 196/239 197/239 198/239 199/239 200/239 201/239 202/239 203/239 204/239 205/239 206/239 207/239 208/239 209/239 210/239 211/239 212/239 213/239 214/239 215/239 216/239 217/239 218/239 219/239 220/239 221/239 222/239 223/239 224/239 225/239 226/239 227/239 228/239 229/239 230/239 231/239 232/239 233/239 234/239 235/239 236/239 237/239 238/239 239/239  [collapse]
  [save_struct] 47/59 48/59 49/59 50/59 51/59 52/59 53/59 54/59 55/59 56/59 57/59 58/59 59/59  [collapse] [write]
Outputting gene_sample_coverage_table: ./LUAD.per_gene.coverage.txt
  [save_struct] 126/237 127/237 128/237 129/237 130/237 131/237 132/237 133/237 134/237 135/237 136/237 137/237 138/237 139/237 140/237 141/237 142/237 143/237 144/237 145/237 146/237 147/237 148/237 149/237 150/237 151/237 152/237 153/237 154/237 155/237 156/237 157/237 158/237 159/237 160/237 161/237 162/237 163/237 164/237 165/237 166/237 167/237 168/237 169/237 170/237 171/237 172/237 173/237 174/237 175/237 176/237 177/237 178/237 179/237 180/237 181/237 182/237 183/237 184/237 185/237 186/237 187/237 188/237 189/237 190/237 191/237 192/237 193/237 194/237 195/237 196/237 197/237 198/237 199/237 200/237 201/237 202/237 203/237 204/237 205/237 206/237 207/237 208/237 209/237 210/237 211/237 212/237 213/237 214/237 215/237 216/237 217/237 218/237 219/237 220/237 221/237 222/237 223/237 224/237 225/237 226/237 227/237 228/237 229/237 230/237 231/237 232/237 233/237 234/237 235/237 236/237 237/237  [collapse] [write]
Outputting gene_sample_mutation_counts_table: ./LUAD.per_gene.mutation_counts.txt
  [save_struct] 149/237 150/237 151/237 152/237 153/237 154/237 155/237 156/237 157/237 158/237 159/237 160/237 161/237 162/237 163/237 164/237 165/237 166/237 167/237 168/237 169/237 170/237 171/237 172/237 173/237 174/237 175/237 176/237 177/237 178/237 179/237 180/237 181/237 182/237 183/237 184/237 185/237 186/237 187/237 188/237 189/237 190/237 191/237 192/237 193/237 194/237 195/237 196/237 197/237 198/237 199/237 200/237 201/237 202/237 203/237 204/237 205/237 206/237 207/237 208/237 209/237 210/237 211/237 212/237 213/237 214/237 215/237 216/237 217/237 218/237 219/237 220/237 221/237 222/237 223/237 224/237 225/237 226/237 227/237 228/237 229/237 230/237 231/237 232/237 233/237 234/237 235/237 236/237 237/237  [collapse] [write]
Mutation breakdown by type

           Frame_Shift_Del: [1341]
           Frame_Shift_Ins: [558]
              In_Frame_Del: [200]
              In_Frame_Ins: [27]
         Missense_Mutation: [60650]
         Nonsense_Mutation: [4843]
          Nonstop_Mutation: [58]
                    Silent: [22937]
               Splice_Site: [1868]
    Translation_Start_Site: [134]
                 ----TOTAL: [92616]
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Gather job: collecting partial results

Running MutSig 2:
Gather job: collecting partial results
Outputting significance table: ./LUAD.sig_genes.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene APOPTOSIS the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 86933   n = 1	mu =   7.03e-07
In gene APOPTOSIS_GENMAPP the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 56336   n = 1	mu =   7.03e-07
In gene ARFPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 30737   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 30737   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 30737   n = 1	mu =   7.03e-07
29	ARFPATHWAY	4.662937e-15
In gene ASBCELLPATHWAY the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 5936    n = 1	mu =   9.71e-07
In gene ATMPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 44883   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 44883   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 44883   n = 1	mu =   7.03e-07
35	ATMPATHWAY	2.187139e-14
In gene ATRBRCAPATHWAY the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 66323   n = 2	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 66323   n = 1	mu =   7.03e-07
    LUAD-64-1680-TP	categ 6	N = 66323   n = 1	mu =   5.35e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_LACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 7663    n = 1	mu =   5.69e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 9217    n = 1	mu =   5.69e-07
In gene CHEMICALPATHWAY the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 41279   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 41279   n = 1	mu =   7.03e-07
78	CHEMICALPATHWAY	7.432493e-06
In gene EEA1PATHWAY the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 19284   n = 1	mu =   2.01e-07
In gene EGFR_SMRTEPATHWAY the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 25862   n = 1	mu =   2.01e-07
In gene EIF2PATHWAY the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 17454   n = 1	mu =   3.68e-07
In gene FOSBPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 5789    n = 1	mu =   4.02e-07
In gene G1PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 45717   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 45717   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 45717   n = 1	mu =   7.03e-07
140	G1PATHWAY	1.993938e-11
In gene G2PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 63875   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 63875   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 63875   n = 1	mu =   7.03e-07
141	G2PATHWAY	2.428113e-07
In gene HSA00601_GLYCOSPHINGOLIPID_BIOSYNTHESIS_LACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 10796   n = 1	mu =   5.69e-07
In gene HSA00830_RETINOL_METABOLISM the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 5828    n = 1	mu =   7.03e-07
In gene HSA04110_CELL_CYCLE the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 206310  n = 1	mu =   2.01e-07
In gene HSA04115_P53_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 98717   n = 1	mu =   7.03e-07
In gene HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 60779   n = 1	mu =   2.01e-07
In gene HSA04320_DORSO_VENTRAL_AXIS_FORMATION the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 78764   n = 1	mu =   2.01e-07
In gene MSPPATHWAY the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 9912    n = 1	mu =   5.35e-07
In gene NUCLEOTIDE_METABOLISM the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 19026   n = 1	mu =   3.68e-07
In gene P53HYPOXIAPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 31320   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 31320   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 31320   n = 1	mu =   7.03e-07
447	P53HYPOXIAPATHWAY	5.329071e-15
In gene P53PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 27365   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 27365   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 27365   n = 1	mu =   7.03e-07
448	P53PATHWAY	5.107026e-15
In gene PLK3PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 24094   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 24094   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 24094   n = 1	mu =   7.03e-07
468	PLK3PATHWAY	1.998401e-15
In gene PMLPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 28918   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 28918   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 28918   n = 1	mu =   7.03e-07
469	PMLPATHWAY	4.884981e-15
In gene PTC1PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 13253   n = 1	mu =   5.69e-07
In gene RBPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 26508   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 26508   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 26508   n = 1	mu =   7.03e-07
493	RBPATHWAY	6.217249e-15
In gene RNAPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 14729   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 14729   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 14729   n = 1	mu =   7.03e-07
503	RNAPATHWAY	3.774758e-15
In gene SA_FAS_SIGNALING the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 5749    n = 1	mu =   3.68e-07
In gene SA_G1_AND_S_PHASES the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 12921   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 12921   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 12921   n = 1	mu =   7.03e-07
510	SA_G1_AND_S_PHASES	5.995204e-15
In gene SA_G2_AND_M_PHASES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 10801   n = 1	mu =   5.69e-07
In gene SETPATHWAY the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 15946   n = 1	mu =   9.71e-07
In gene SODDPATHWAY the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 12736   n = 1	mu =   3.68e-07
In gene ST_FAS_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    LUAD-75-6205-TP	categ 6	N = 110669  n = 1	mu =   1.67e-07
    LUAD-75-6212-TP	categ 6	N = 110669  n = 1	mu =   2.01e-07
In gene ST_JNK_MAPK_PATHWAY the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 75485   n = 1	mu =   7.03e-07
In gene TELPATHWAY the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 42282   n = 1	mu =   7.03e-07
    LUAD-75-6212-TP	categ 6	N = 42282   n = 1	mu =   2.01e-07
In gene TERTPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 10602   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 10602   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 10602   n = 1	mu =   7.03e-07
    LUAD-75-6212-TP	categ 6	N = 10602   n = 1	mu =   2.01e-07
587	TERTPATHWAY	3.441691e-15
In gene TIDPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 27652   n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 27652   n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 27652   n = 1	mu =   7.03e-07
591	TIDPATHWAY	5.773160e-15
Done
Outputting significance table: ./LUAD.sig_genesets.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene ASBCELLPATHWAY the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 5936    n = 1	mu =   9.71e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_LACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 7663    n = 1	mu =   5.69e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 9217    n = 1	mu =   5.69e-07
In gene EIF2PATHWAY the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 17454   n = 1	mu =   3.68e-07
In gene FOSBPATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 5789    n = 1	mu =   4.02e-07
In gene HSA00601_GLYCOSPHINGOLIPID_BIOSYNTHESIS_LACTOSERIES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 10796   n = 1	mu =   5.69e-07
In gene HSA00830_RETINOL_METABOLISM the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 5828    n = 1	mu =   7.03e-07
In gene HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 60779   n = 1	mu =   2.01e-07
In gene MSPPATHWAY the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 9912    n = 1	mu =   5.35e-07
In gene NUCLEOTIDE_METABOLISM the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 19026   n = 1	mu =   3.68e-07
In gene PTC1PATHWAY the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 13253   n = 1	mu =   5.69e-07
In gene SA_FAS_SIGNALING the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 5749    n = 1	mu =   3.68e-07
In gene SA_G2_AND_M_PHASES the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 10801   n = 1	mu =   5.69e-07
In gene SETPATHWAY the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 15946   n = 1	mu =   9.71e-07
In gene SODDPATHWAY the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 12736   n = 1	mu =   3.68e-07
In gene TERTPATHWAY the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 8155    n = 1	mu =   2.01e-07
Done
Outputting significance table: ./LUAD.sig_genesets_2.txt
Done
Loaded COSMIC database from /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
WARNING: unknown chromosome(s):
    {''}

COSMIC analysis:  gene 1000/4520 2000/4520 3000/4520 4000/4520 
Loading refseq database...

Mutation coordinate error (line 3039): Length of alternate bases must equal length of refence bases.
113084979	113084981	CNC	CNC	A
Mutation coordinate error (line 4969): Length of alternate bases must equal length of refence bases.
155240723	155240725	CNC	CNC	A
Mutation coordinate error (line 12478): Length of alternate bases must equal length of refence bases.
214818772	214818774	CNC	CNC	T
Mutation coordinate error (line 16722): Length of alternate bases must equal length of refence bases.
117874821	117874823	ANG	ANG	T
Mutation coordinate error (line 22669): Length of alternate bases must equal length of refence bases.
129903161	129903163	CNT	CNT	A
Mutation coordinate error (line 23923): Length of alternate bases must equal length of refence bases.
98951633	98951635	GNG	GNG	T
Mutation coordinate error (line 25702): Length of alternate bases must equal length of refence bases.
110920853	110920855	CNG	CNG	T
Mutation coordinate error (line 25743): Length of alternate bases must equal length of refence bases.
128490893	128490895	CNA	CNA	A
Mutation coordinate error (line 26557): Length of alternate bases must equal length of refence bases.
102957423	102957425	CNC	CNC	T
Mutation coordinate error (line 26878): Length of alternate bases must equal length of refence bases.
106813563	106813565	GNG	GNG	T
Mutation coordinate error (line 27794): Length of alternate bases must equal length of refence bases.
189856420	189856422	GNG	GNG	T
Mutation coordinate error (line 30304): Length of alternate bases must equal length of refence bases.
248367276	248367278	ANG	ANG	G
Mutation coordinate error (line 31088): Length of alternate bases must equal length of refence bases.
248637470	248637472	TNA	TNA	A
Mutation coordinate error (line 35527): Length of alternate bases must equal length of refence bases.
47034469	47034470	--	--	A
Mutation coordinate error (line 36993): Length of alternate bases must equal length of refence bases.
229773791	229773793	ANA	ANA	T
Mutation coordinate error (line 39176): Length of alternate bases must equal length of refence bases.
118812003	118812004	--	--	G
Mutation coordinate error (line 39332): Length of alternate bases must equal length of refence bases.
148683685	148683686	--	--	A
Mutation coordinate error (line 39781): Length of alternate bases must equal length of refence bases.
247695356	247695358	CNC	CNC	A
Mutation coordinate error (line 39960): Length of alternate bases must equal length of refence bases.
44489925	44489926	--	--	C
Mutation coordinate error (line 39984): Length of alternate bases must equal length of refence bases.
18636375	18636376	--	--	A
Mutation coordinate error (line 39990): Length of alternate bases must equal length of refence bases.
104126791	104126792	--	--	T
Mutation coordinate error (line 40028): Length of alternate bases must equal length of refence bases.
98188503	98188504	--	--	C
Mutation coordinate error (line 40090): Length of alternate bases must equal length of refence bases.
72993508	72993509	--	--	C
Mutation coordinate error (line 40552): Length of alternate bases must equal length of refence bases.
96480183	96480184	--	--	T
Mutation coordinate error (line 40621): Length of alternate bases must equal length of refence bases.
185956655	185956656	--	--	C
Mutation coordinate error (line 40646): Length of alternate bases must equal length of refence bases.
118222495	118222496	--	--	A
Mutation coordinate error (line 40665): Length of alternate bases must equal length of refence bases.
76371428	76371429	--	--	G
Mutation coordinate error (line 40783): Length of alternate bases must equal length of refence bases.
116938031	116938033	CNG	CNG	A
Mutation coordinate error (line 40881): Length of alternate bases must equal length of refence bases.
95121039	95121040	--	--	A
Mutation coordinate error (line 41047): Length of alternate bases must equal length of refence bases.
120467956	120467957	--	--	A
Mutation coordinate error (line 41477): Length of alternate bases must equal length of refence bases.
28200322	28200323	--	--	T
Mutation coordinate error (line 41575): Length of alternate bases must equal length of refence bases.
132351139	132351141	TNG	TNG	C
Mutation coordinate error (line 41626): Length of alternate bases must equal length of refence bases.
28898967	28898968	--	--	G
Mutation coordinate error (line 41732): Length of alternate bases must equal length of refence bases.
36676873	36676874	--	--	C
Mutation coordinate error (line 41768): Length of alternate bases must equal length of refence bases.
49842429	49842430	--	--	A
Mutation coordinate error (line 41902): Length of alternate bases must equal length of refence bases.
89624246	89624247	--	--	G
Mutation coordinate error (line 41945): Length of alternate bases must equal length of refence bases.
95847781	95847782	--	--	T
Mutation coordinate error (line 42476): Length of alternate bases must equal length of refence bases.
247921086	247921090	ANNNC	ANNNC	T
Mutation coordinate error (line 43139): Length of alternate bases must equal length of refence bases.
79181428	79181429	--	--	A
Mutation coordinate error (line 43180): Length of alternate bases must equal length of refence bases.
73433097	73433098	--	--	A
Mutation coordinate error (line 43276): Length of alternate bases must equal length of refence bases.
35988559	35988560	--	--	A
Mutation coordinate error (line 43396): Length of alternate bases must equal length of refence bases.
170871013	170871014	--	--	CAG
Mutation coordinate error (line 43428): Length of alternate bases must equal length of refence bases.
15996864	15996865	--	--	T
Mutation coordinate error (line 44049): Length of alternate bases must equal length of refence bases.
186106738	186106739	--	--	T
Mutation coordinate error (line 44466): Length of alternate bases must equal length of refence bases.
118770846	118770847	--	--	C
Mutation coordinate error (line 44579): Length of alternate bases must equal length of refence bases.
5024990	5024991	--	--	C
Mutation coordinate error (line 44600): Length of alternate bases must equal length of refence bases.
80101445	80101446	--	--	C
Mutation coordinate error (line 44864): Length of alternate bases must equal length of refence bases.
71426054	71426055	--	--	T
Mutation coordinate error (line 44908): Length of alternate bases must equal length of refence bases.
108948874	108948875	--	--	T
Mutation coordinate error (line 45002): Length of alternate bases must equal length of refence bases.
5821268	5821269	--	--	A
Mutation coordinate error (line 45017): Length of alternate bases must equal length of refence bases.
4389086	4389087	--	--	A
Mutation coordinate error (line 45325): Length of alternate bases must equal length of refence bases.
53519990	53519991	--	--	A
Mutation coordinate error (line 45427): Length of alternate bases must equal length of refence bases.
40692466	40692467	--	--	A
Mutation coordinate error (line 45510): Length of alternate bases must equal length of refence bases.
112382465	112382466	--	--	T
Mutation coordinate error (line 45571): Length of alternate bases must equal length of refence bases.
120385968	120385969	--	--	A
Mutation coordinate error (line 45609): Length of alternate bases must equal length of refence bases.
155874531	155874532	--	--	GTATCCAAA
Mutation coordinate error (line 46047): Length of alternate bases must equal length of refence bases.
163004007	163004009	TNG	TNG	G
Mutation coordinate error (line 46299): Length of alternate bases must equal length of refence bases.
229675222	229675224	CNA	CNA	A
Mutation coordinate error (line 49572): Length of alternate bases must equal length of refence bases.
247588623	247588625	CNA	CNA	A
Mutation coordinate error (line 54007): Length of alternate bases must equal length of refence bases.
248402587	248402589	TNA	TNA	A
Mutation coordinate error (line 55190): Length of alternate bases must equal length of refence bases.
151166649	151166651	CNG	CNG	A
Mutation coordinate error (line 55964): Length of alternate bases must equal length of refence bases.
139396481	139396482	--	--	C
Mutation coordinate error (line 56041): Length of alternate bases must equal length of refence bases.
192547444	192547445	GA	GA	A
Mutation coordinate error (line 56111): Length of alternate bases must equal length of refence bases.
47256494	47256495	GG	GG	T
Mutation coordinate error (line 56264): Length of alternate bases must equal length of refence bases.
5827175	5827176	TC	TC	A
Mutation coordinate error (line 57678): Length of alternate bases must equal length of refence bases.
187627867	187627868	--	--	A
Mutation coordinate error (line 58025): Length of alternate bases must equal length of refence bases.
100934506	100934507	--	--	T
Mutation coordinate error (line 58047): Length of alternate bases must equal length of refence bases.
149191498	149191499	--	--	C
Mutation coordinate error (line 59777): Length of alternate bases must equal length of refence bases.
96167533	96167535	ANC	ANC	C
Mutation coordinate error (line 61344): Length of alternate bases must equal length of refence bases.
106553068	106553069	--	--	A
Mutation coordinate error (line 61801): Length of alternate bases must equal length of refence bases.
107977860	107977861	--	--	A
Mutation coordinate error (line 61909): Length of alternate bases must equal length of refence bases.
12623348	12623349	--	--	C
Mutation coordinate error (line 62214): Length of alternate bases must equal length of refence bases.
11138587	11138588	--	--	A
Mutation coordinate error (line 62340): Length of alternate bases must equal length of refence bases.
54358470	54358471	--	--	T
Mutation coordinate error (line 64162): Length of alternate bases must equal length of refence bases.
156910211	156910213	CNA	CNA	A
Mutation coordinate error (line 67748): Length of alternate bases must equal length of refence bases.
210560407	210560408	--	--	T
Mutation coordinate error (line 67756): Length of alternate bases must equal length of refence bases.
118380757	118380758	--	--	A
Mutation coordinate error (line 67807): Length of alternate bases must equal length of refence bases.
140720800	140720801	--	--	A

Error in maflite format!  The faulty lines displayed above will not be included in output.
Ignoring the mutations listed above.
Analyzing clustered mutations
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WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

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WARNING: trimming <start> to <filesize>
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800/14652 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

1100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1300/14652 1400/14652 1500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1600/14652 1700/14652 WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

1800/14652 1900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2700/14652 WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
3000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<CSMD3 muts: 100/160 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
3100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
3200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

3300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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3400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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3600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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3700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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3900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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4000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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4100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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4200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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4300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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4400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
4500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4600/14652 <FLG muts: 100/128 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_ssto_hap7'

WARNING: unknown chromosome(s):
    'chr6_ssto_hap7'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5600/14652 WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5800/14652 WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

6500/14652 WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6700/14652 6800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7100/14652 <LRP1B muts: 100/149 /> 7200/14652 WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7400/14652 WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7900/14652 <MUC16 muts: 100/181 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
8100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
8600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

8700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

8800/14652 8900/14652 9000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9600/14652 9700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11000/14652 <RYR2 muts: 100/166 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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12000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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12100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

12500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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12600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
13000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<TP53 muts: 100/126 /> 13100/14652 13200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
13300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<TTN muts: 100/375 200/375 300/375 /> 13400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
13500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

13600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<USH2A muts: 100/116 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

13700/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
13800/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
13900/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14000/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14100/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<ZFHX4 muts: 100/111 /> WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14200/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14300/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14400/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14500/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
14600/14652 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY

Truncating list of significant genes after the first 100 genes
Analyzing gene-gene correlations and anti-correlations
Performing permutations:
1.48	10/1000000	0.15	0.148	6.7	4617/4950 pairs	6/100 genes done
3.00	44/1000000	0.07	0.045	22.4	4828/4950 pairs	22/100 genes done
5.51	155/1000000	0.04	0.023	44.3	4907/4950 pairs	54/100 genes done
8.35	376/1000000	0.02	0.013	77.9	4928/4950 pairs	67/100 genes done
12.12	765/1000000	0.02	0.010	103.3	4934/4950 pairs	76/100 genes done
15.99	1282/1000000	0.01	0.007	133.4	4938/4950 pairs	81/100 genes done
20.10	1949/1000000	0.01	0.006	162.4	4942/4950 pairs	88/100 genes done
24.43	2761/1000000	0.01	0.005	187.3	4942/4950 pairs	88/100 genes done
28.99	3697/1000000	0.01	0.005	205.4	4943/4950 pairs	90/100 genes done
33.65	4725/1000000	0.01	0.005	220.4	4944/4950 pairs	91/100 genes done
38.50	5826/1000000	0.01	0.004	227.3	4945/4950 pairs	92/100 genes done
43.31	6963/1000000	0.01	0.004	236.2	4945/4950 pairs	92/100 genes done
48.13	8144/1000000	0.01	0.004	245.0	4946/4950 pairs	94/100 genes done
53.17	9369/1000000	0.01	0.004	242.9	4946/4950 pairs	94/100 genes done
58.13	10594/1000000	0.01	0.004	247.1	4946/4950 pairs	94/100 genes done
62.92	11829/1000000	0.01	0.004	258.2	4946/4950 pairs	94/100 genes done
67.89	13121/1000000	0.01	0.004	259.9	4946/4950 pairs	94/100 genes done
72.88	14419/1000000	0.01	0.004	259.9	4946/4950 pairs	94/100 genes done
77.89	15719/1000000	0.00	0.004	259.6	4946/4950 pairs	94/100 genes done
82.07	17020/1000000	0.00	0.003	311.1	4947/4950 pairs	96/100 genes done
86.51	18574/1000000	0.00	0.003	350.4	4947/4950 pairs	96/100 genes done
91.48	20327/1000000	0.00	0.003	352.7	4947/4950 pairs	96/100 genes done
96.30	22091/1000000	0.00	0.003	365.5	4948/4950 pairs	97/100 genes done
100.53	23918/1000000	0.00	0.002	432.6	4948/4950 pairs	97/100 genes done
105.51	26080/1000000	0.00	0.002	433.7	4948/4950 pairs	97/100 genes done
110.52	28249/1000000	0.00	0.002	433.3	4948/4950 pairs	97/100 genes done
115.49	30419/1000000	0.00	0.002	436.4	4948/4950 pairs	97/100 genes done
120.47	32600/1000000	0.00	0.002	437.7	4948/4950 pairs	97/100 genes done
125.51	34788/1000000	0.00	0.002	434.5	4948/4950 pairs	97/100 genes done
130.74	36977/1000000	0.00	0.002	418.7	4948/4950 pairs	97/100 genes done
135.87	39165/1000000	0.00	0.002	426.5	4948/4950 pairs	97/100 genes done
141.00	41354/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
146.13	43542/1000000	0.00	0.002	426.8	4948/4950 pairs	97/100 genes done
151.27	45731/1000000	0.00	0.002	425.2	4948/4950 pairs	97/100 genes done
156.41	47919/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
161.54	50108/1000000	0.00	0.002	426.7	4948/4950 pairs	97/100 genes done
166.68	52296/1000000	0.00	0.002	425.7	4948/4950 pairs	97/100 genes done
171.81	54485/1000000	0.00	0.002	426.2	4948/4950 pairs	97/100 genes done
176.95	56673/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
182.09	58862/1000000	0.00	0.002	425.8	4948/4950 pairs	97/100 genes done
187.22	61050/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
192.32	63239/1000000	0.00	0.002	428.8	4948/4950 pairs	97/100 genes done
197.35	65427/1000000	0.00	0.002	435.4	4948/4950 pairs	97/100 genes done
202.34	67616/1000000	0.00	0.002	438.9	4948/4950 pairs	97/100 genes done
207.39	69810/1000000	0.00	0.002	434.0	4948/4950 pairs	97/100 genes done
212.43	72003/1000000	0.00	0.002	435.4	4948/4950 pairs	97/100 genes done
217.47	74197/1000000	0.00	0.002	435.5	4948/4950 pairs	97/100 genes done
222.73	76391/1000000	0.00	0.002	416.8	4948/4950 pairs	97/100 genes done
227.80	78585/1000000	0.00	0.002	432.9	4948/4950 pairs	97/100 genes done
232.93	80778/1000000	0.00	0.002	427.4	4948/4950 pairs	97/100 genes done
238.10	82972/1000000	0.00	0.002	424.4	4948/4950 pairs	97/100 genes done
243.28	85166/1000000	0.00	0.002	423.9	4948/4950 pairs	97/100 genes done
248.50	87360/1000000	0.00	0.002	419.9	4948/4950 pairs	97/100 genes done
253.72	89554/1000000	0.00	0.002	420.0	4948/4950 pairs	97/100 genes done
258.94	91747/1000000	0.00	0.002	420.6	4948/4950 pairs	97/100 genes done
264.12	93941/1000000	0.00	0.002	423.8	4948/4950 pairs	97/100 genes done
269.16	96135/1000000	0.00	0.002	434.9	4948/4950 pairs	97/100 genes done
274.19	98329/1000000	0.00	0.002	435.9	4948/4950 pairs	97/100 genes done
279.22	100523/1000000	0.00	0.002	436.5	4948/4950 pairs	97/100 genes done
284.23	102716/1000000	0.00	0.002	437.5	4948/4950 pairs	97/100 genes done
289.29	104910/1000000	0.00	0.002	434.3	4948/4950 pairs	97/100 genes done
294.41	107104/1000000	0.00	0.002	428.3	4948/4950 pairs	97/100 genes done
299.98	109298/1000000	0.00	0.003	393.7	4948/4950 pairs	97/100 genes done
305.35	111491/1000000	0.00	0.002	408.2	4948/4950 pairs	97/100 genes done
310.80	113685/1000000	0.00	0.002	402.6	4948/4950 pairs	97/100 genes done
316.61	115879/1000000	0.00	0.003	377.5	4948/4950 pairs	97/100 genes done
321.76	118073/1000000	0.00	0.002	426.7	4948/4950 pairs	97/100 genes done
326.92	120267/1000000	0.00	0.002	424.6	4948/4950 pairs	97/100 genes done
332.16	122460/1000000	0.00	0.002	419.1	4948/4950 pairs	97/100 genes done
337.34	124654/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
342.52	126848/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
347.74	129042/1000000	0.00	0.002	420.4	4948/4950 pairs	97/100 genes done
352.93	131235/1000000	0.00	0.002	422.2	4948/4950 pairs	97/100 genes done
358.12	133429/1000000	0.00	0.002	422.9	4948/4950 pairs	97/100 genes done
363.32	135623/1000000	0.00	0.002	422.3	4948/4950 pairs	97/100 genes done
368.52	137817/1000000	0.00	0.002	421.5	4948/4950 pairs	97/100 genes done
373.85	140011/1000000	0.00	0.002	412.1	4948/4950 pairs	97/100 genes done
379.07	142204/1000000	0.00	0.002	419.7	4948/4950 pairs	97/100 genes done
384.27	144398/1000000	0.00	0.002	422.3	4948/4950 pairs	97/100 genes done
389.46	146592/1000000	0.00	0.002	422.3	4948/4950 pairs	97/100 genes done
394.68	148786/1000000	0.00	0.002	420.4	4948/4950 pairs	97/100 genes done
399.86	150980/1000000	0.00	0.002	424.0	4948/4950 pairs	97/100 genes done
405.00	153173/1000000	0.00	0.002	426.5	4948/4950 pairs	97/100 genes done
410.13	155367/1000000	0.00	0.002	427.2	4948/4950 pairs	97/100 genes done
415.27	157561/1000000	0.00	0.002	427.2	4948/4950 pairs	97/100 genes done
420.42	159755/1000000	0.00	0.002	426.2	4948/4950 pairs	97/100 genes done
425.64	161948/1000000	0.00	0.002	420.2	4948/4950 pairs	97/100 genes done
430.80	164142/1000000	0.00	0.002	425.1	4948/4950 pairs	97/100 genes done
435.94	166336/1000000	0.00	0.002	427.0	4948/4950 pairs	97/100 genes done
441.10	168530/1000000	0.00	0.002	424.7	4948/4950 pairs	97/100 genes done
446.27	170724/1000000	0.00	0.002	424.4	4948/4950 pairs	97/100 genes done
451.47	172917/1000000	0.00	0.002	422.0	4948/4950 pairs	97/100 genes done
456.70	175111/1000000	0.00	0.002	419.6	4948/4950 pairs	97/100 genes done
462.25	177305/1000000	0.00	0.003	395.0	4948/4950 pairs	97/100 genes done
467.61	179499/1000000	0.00	0.002	409.4	4948/4950 pairs	97/100 genes done
474.28	181692/1000000	0.00	0.003	328.6	4948/4950 pairs	97/100 genes done
479.76	183886/1000000	0.00	0.002	400.9	4948/4950 pairs	97/100 genes done
485.06	186080/1000000	0.00	0.002	413.8	4948/4950 pairs	97/100 genes done
490.35	188274/1000000	0.00	0.002	414.9	4948/4950 pairs	97/100 genes done
500.85	190468/1000000	0.00	0.005	208.9	4948/4950 pairs	97/100 genes done
505.99	192661/1000000	0.00	0.002	426.5	4948/4950 pairs	97/100 genes done
511.15	194855/1000000	0.00	0.002	425.4	4948/4950 pairs	97/100 genes done
516.67	197049/1000000	0.00	0.003	397.3	4948/4950 pairs	97/100 genes done
521.94	199243/1000000	0.00	0.002	416.3	4948/4950 pairs	97/100 genes done
526.97	201436/1000000	0.00	0.002	436.5	4948/4950 pairs	97/100 genes done
532.00	203630/1000000	0.00	0.002	436.1	4948/4950 pairs	97/100 genes done
537.03	205824/1000000	0.00	0.002	435.8	4948/4950 pairs	97/100 genes done
542.07	208018/1000000	0.00	0.002	435.8	4948/4950 pairs	97/100 genes done
547.06	210212/1000000	0.00	0.002	439.0	4948/4950 pairs	97/100 genes done
552.05	212406/1000000	0.00	0.002	440.0	4948/4950 pairs	97/100 genes done
557.30	214607/1000000	0.00	0.002	419.5	4948/4950 pairs	97/100 genes done
562.31	216808/1000000	0.00	0.002	439.2	4948/4950 pairs	97/100 genes done
567.32	219008/1000000	0.00	0.002	439.2	4948/4950 pairs	97/100 genes done
572.34	221209/1000000	0.00	0.002	438.4	4948/4950 pairs	97/100 genes done
577.35	223410/1000000	0.00	0.002	439.1	4948/4950 pairs	97/100 genes done
582.37	225611/1000000	0.00	0.002	438.8	4948/4950 pairs	97/100 genes done
587.38	227811/1000000	0.00	0.002	439.2	4948/4950 pairs	97/100 genes done
592.87	230012/1000000	0.00	0.002	400.4	4948/4950 pairs	97/100 genes done
598.01	232213/1000000	0.00	0.002	428.3	4948/4950 pairs	97/100 genes done
603.33	234414/1000000	0.00	0.002	414.2	4948/4950 pairs	97/100 genes done
608.39	236614/1000000	0.00	0.002	434.6	4948/4950 pairs	97/100 genes done
613.50	238815/1000000	0.00	0.002	430.7	4948/4950 pairs	97/100 genes done
618.83	241016/1000000	0.00	0.002	412.5	4948/4950 pairs	97/100 genes done
623.95	243217/1000000	0.00	0.002	430.4	4948/4950 pairs	97/100 genes done
629.25	245417/1000000	0.00	0.002	414.7	4948/4950 pairs	97/100 genes done
634.35	247618/1000000	0.00	0.002	432.1	4948/4950 pairs	97/100 genes done
639.43	249819/1000000	0.00	0.002	432.9	4948/4950 pairs	97/100 genes done
644.47	252019/1000000	0.00	0.002	436.9	4948/4950 pairs	97/100 genes done
649.53	254220/1000000	0.00	0.002	435.0	4948/4950 pairs	97/100 genes done
654.63	256421/1000000	0.00	0.002	431.6	4948/4950 pairs	97/100 genes done
659.71	258622/1000000	0.00	0.002	432.9	4948/4950 pairs	97/100 genes done
664.75	260822/1000000	0.00	0.002	436.6	4948/4950 pairs	97/100 genes done
669.90	263023/1000000	0.00	0.002	427.6	4948/4950 pairs	97/100 genes done
675.11	265224/1000000	0.00	0.002	422.5	4948/4950 pairs	97/100 genes done
680.31	267425/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
685.52	269625/1000000	0.00	0.002	422.2	4948/4950 pairs	97/100 genes done
690.63	271826/1000000	0.00	0.002	430.0	4948/4950 pairs	97/100 genes done
695.80	274027/1000000	0.00	0.002	425.7	4948/4950 pairs	97/100 genes done
700.98	276228/1000000	0.00	0.002	425.1	4948/4950 pairs	97/100 genes done
706.04	278428/1000000	0.00	0.002	435.3	4948/4950 pairs	97/100 genes done
711.11	280629/1000000	0.00	0.002	433.6	4948/4950 pairs	97/100 genes done
716.30	282830/1000000	0.00	0.002	424.2	4948/4950 pairs	97/100 genes done
721.38	285031/1000000	0.00	0.002	433.1	4948/4950 pairs	97/100 genes done
726.46	287231/1000000	0.00	0.002	433.6	4948/4950 pairs	97/100 genes done
731.54	289432/1000000	0.00	0.002	432.6	4948/4950 pairs	97/100 genes done
736.64	291633/1000000	0.00	0.002	432.2	4948/4950 pairs	97/100 genes done
741.69	293834/1000000	0.00	0.002	435.6	4948/4950 pairs	97/100 genes done
746.74	296034/1000000	0.00	0.002	435.6	4948/4950 pairs	97/100 genes done
751.82	298235/1000000	0.00	0.002	433.2	4948/4950 pairs	97/100 genes done
756.89	300436/1000000	0.00	0.002	434.1	4948/4950 pairs	97/100 genes done
761.97	302636/1000000	0.00	0.002	433.7	4948/4950 pairs	97/100 genes done
767.14	304837/1000000	0.00	0.002	425.6	4948/4950 pairs	97/100 genes done
772.36	307038/1000000	0.00	0.002	421.5	4948/4950 pairs	97/100 genes done
777.55	309239/1000000	0.00	0.002	423.6	4948/4950 pairs	97/100 genes done
782.74	311439/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
787.93	313640/1000000	0.00	0.002	423.7	4948/4950 pairs	97/100 genes done
793.12	315841/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
798.34	318042/1000000	0.00	0.002	422.0	4948/4950 pairs	97/100 genes done
803.54	320242/1000000	0.00	0.002	423.1	4948/4950 pairs	97/100 genes done
808.72	322443/1000000	0.00	0.002	424.5	4948/4950 pairs	97/100 genes done
813.91	324644/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
819.10	326845/1000000	0.00	0.002	424.2	4948/4950 pairs	97/100 genes done
824.29	329045/1000000	0.00	0.002	424.2	4948/4950 pairs	97/100 genes done
829.50	331246/1000000	0.00	0.002	421.9	4948/4950 pairs	97/100 genes done
834.69	333447/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
839.87	335648/1000000	0.00	0.002	424.8	4948/4950 pairs	97/100 genes done
845.05	337848/1000000	0.00	0.002	424.5	4948/4950 pairs	97/100 genes done
850.24	340049/1000000	0.00	0.002	424.1	4948/4950 pairs	97/100 genes done
855.43	342250/1000000	0.00	0.002	424.0	4948/4950 pairs	97/100 genes done
860.65	344450/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
865.86	346651/1000000	0.00	0.002	422.3	4948/4950 pairs	97/100 genes done
871.08	348852/1000000	0.00	0.002	421.5	4948/4950 pairs	97/100 genes done
876.30	351053/1000000	0.00	0.002	421.6	4948/4950 pairs	97/100 genes done
881.52	353253/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
886.71	355454/1000000	0.00	0.002	423.9	4948/4950 pairs	97/100 genes done
891.93	357655/1000000	0.00	0.002	421.7	4948/4950 pairs	97/100 genes done
897.14	359856/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
902.36	362056/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
907.57	364257/1000000	0.00	0.002	421.9	4948/4950 pairs	97/100 genes done
912.79	366458/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
918.03	368659/1000000	0.00	0.002	420.3	4948/4950 pairs	97/100 genes done
923.27	370859/1000000	0.00	0.002	419.6	4948/4950 pairs	97/100 genes done
928.51	373060/1000000	0.00	0.002	420.1	4948/4950 pairs	97/100 genes done
933.74	375261/1000000	0.00	0.002	420.3	4948/4950 pairs	97/100 genes done
938.93	377462/1000000	0.00	0.002	424.7	4948/4950 pairs	97/100 genes done
944.05	379662/1000000	0.00	0.002	429.8	4948/4950 pairs	97/100 genes done
949.16	381863/1000000	0.00	0.002	430.7	4948/4950 pairs	97/100 genes done
954.95	384064/1000000	0.00	0.003	379.6	4948/4950 pairs	97/100 genes done
960.32	386265/1000000	0.00	0.002	410.4	4948/4950 pairs	97/100 genes done
965.78	388465/1000000	0.00	0.002	402.6	4948/4950 pairs	97/100 genes done
971.36	390666/1000000	0.00	0.003	394.3	4948/4950 pairs	97/100 genes done
976.54	392867/1000000	0.00	0.002	425.2	4948/4950 pairs	97/100 genes done
981.80	395067/1000000	0.00	0.002	418.6	4948/4950 pairs	97/100 genes done
987.03	397268/1000000	0.00	0.002	421.0	4948/4950 pairs	97/100 genes done
992.25	399469/1000000	0.00	0.002	421.0	4948/4950 pairs	97/100 genes done
997.45	401670/1000000	0.00	0.002	423.8	4948/4950 pairs	97/100 genes done
1002.53	403870/1000000	0.00	0.002	433.1	4948/4950 pairs	97/100 genes done
1007.66	406071/1000000	0.00	0.002	428.7	4948/4950 pairs	97/100 genes done
1012.77	408272/1000000	0.00	0.002	430.7	4948/4950 pairs	97/100 genes done
1017.97	410473/1000000	0.00	0.002	423.1	4948/4950 pairs	97/100 genes done
1023.30	412673/1000000	0.00	0.002	413.0	4948/4950 pairs	97/100 genes done
1028.56	414874/1000000	0.00	0.002	418.4	4948/4950 pairs	97/100 genes done
1033.76	417075/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
1038.95	419276/1000000	0.00	0.002	424.1	4948/4950 pairs	97/100 genes done
1044.13	421476/1000000	0.00	0.002	424.5	4948/4950 pairs	97/100 genes done
1049.31	423677/1000000	0.00	0.002	424.9	4948/4950 pairs	97/100 genes done
1054.49	425878/1000000	0.00	0.002	425.1	4948/4950 pairs	97/100 genes done
1059.70	428079/1000000	0.00	0.002	422.7	4948/4950 pairs	97/100 genes done
1064.89	430279/1000000	0.00	0.002	424.2	4948/4950 pairs	97/100 genes done
1070.07	432480/1000000	0.00	0.002	424.7	4948/4950 pairs	97/100 genes done
1075.26	434681/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
1080.41	436881/1000000	0.00	0.002	426.5	4948/4950 pairs	97/100 genes done
1085.49	439082/1000000	0.00	0.002	433.9	4948/4950 pairs	97/100 genes done
1090.57	441283/1000000	0.00	0.002	433.2	4948/4950 pairs	97/100 genes done
1095.81	443484/1000000	0.00	0.002	420.2	4948/4950 pairs	97/100 genes done
1101.00	445684/1000000	0.00	0.002	423.3	4948/4950 pairs	97/100 genes done
1106.24	447885/1000000	0.00	0.002	420.2	4948/4950 pairs	97/100 genes done
1111.49	450086/1000000	0.00	0.002	419.0	4948/4950 pairs	97/100 genes done
1116.76	452287/1000000	0.00	0.002	418.0	4948/4950 pairs	97/100 genes done
1121.99	454487/1000000	0.00	0.002	420.7	4948/4950 pairs	97/100 genes done
1127.15	456688/1000000	0.00	0.002	426.6	4948/4950 pairs	97/100 genes done
1132.30	458889/1000000	0.00	0.002	427.4	4948/4950 pairs	97/100 genes done
1137.44	461090/1000000	0.00	0.002	427.8	4948/4950 pairs	97/100 genes done
1142.76	463290/1000000	0.00	0.002	413.9	4948/4950 pairs	97/100 genes done
1148.16	465491/1000000	0.00	0.002	407.5	4948/4950 pairs	97/100 genes done
1153.79	467692/1000000	0.00	0.003	390.8	4948/4950 pairs	97/100 genes done
1159.21	469893/1000000	0.00	0.002	406.2	4948/4950 pairs	97/100 genes done
1164.53	472093/1000000	0.00	0.002	413.4	4948/4950 pairs	97/100 genes done
1169.57	474294/1000000	0.00	0.002	436.8	4948/4950 pairs	97/100 genes done
1174.57	476495/1000000	0.00	0.002	440.0	4948/4950 pairs	97/100 genes done
1179.62	478696/1000000	0.00	0.002	436.2	4948/4950 pairs	97/100 genes done
1184.69	480896/1000000	0.00	0.002	433.8	4948/4950 pairs	97/100 genes done
1189.80	483097/1000000	0.00	0.002	430.9	4948/4950 pairs	97/100 genes done
1194.91	485298/1000000	0.00	0.002	430.3	4948/4950 pairs	97/100 genes done
1200.03	487498/1000000	0.00	0.002	429.7	4948/4950 pairs	97/100 genes done
1205.15	489699/1000000	0.00	0.002	429.9	4948/4950 pairs	97/100 genes done
1210.27	491900/1000000	0.00	0.002	430.1	4948/4950 pairs	97/100 genes done
1215.38	494101/1000000	0.00	0.002	430.8	4948/4950 pairs	97/100 genes done
1220.52	496301/1000000	0.00	0.002	427.8	4948/4950 pairs	97/100 genes done
1225.63	498502/1000000	0.00	0.002	431.1	4948/4950 pairs	97/100 genes done
1230.73	500703/1000000	0.00	0.002	431.3	4948/4950 pairs	97/100 genes done
1235.81	502904/1000000	0.00	0.002	433.3	4948/4950 pairs	97/100 genes done
1240.93	505104/1000000	0.00	0.002	429.5	4948/4950 pairs	97/100 genes done
1246.03	507305/1000000	0.00	0.002	432.1	4948/4950 pairs	97/100 genes done
1251.10	509506/1000000	0.00	0.002	433.9	4948/4950 pairs	97/100 genes done
1256.15	511707/1000000	0.00	0.002	436.0	4948/4950 pairs	97/100 genes done
1261.26	513907/1000000	0.00	0.002	430.7	4948/4950 pairs	97/100 genes done
1266.34	516108/1000000	0.00	0.002	432.6	4948/4950 pairs	97/100 genes done
1271.43	518309/1000000	0.00	0.002	432.7	4948/4950 pairs	97/100 genes done
1276.69	520510/1000000	0.00	0.002	418.3	4948/4950 pairs	97/100 genes done
1281.81	522710/1000000	0.00	0.002	429.9	4948/4950 pairs	97/100 genes done
1286.99	524911/1000000	0.00	0.002	424.6	4948/4950 pairs	97/100 genes done
1292.18	527112/1000000	0.00	0.002	424.6	4948/4950 pairs	97/100 genes done
1297.64	529313/1000000	0.00	0.002	402.7	4948/4950 pairs	97/100 genes done
1303.83	531513/1000000	0.00	0.003	355.3	4948/4950 pairs	97/100 genes done
1309.00	533714/1000000	0.00	0.002	426.2	4948/4950 pairs	97/100 genes done
1314.29	535915/1000000	0.00	0.002	415.7	4948/4950 pairs	97/100 genes done
1319.47	538115/1000000	0.00	0.002	424.9	4948/4950 pairs	97/100 genes done
1324.66	540316/1000000	0.00	0.002	424.0	4948/4950 pairs	97/100 genes done
1329.87	542517/1000000	0.00	0.002	422.8	4948/4950 pairs	97/100 genes done
1335.06	544718/1000000	0.00	0.002	423.9	4948/4950 pairs	97/100 genes done
1340.26	546918/1000000	0.00	0.002	423.2	4948/4950 pairs	97/100 genes done
1345.48	549119/1000000	0.00	0.002	421.9	4948/4950 pairs	97/100 genes done
1350.69	551320/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
1355.91	553521/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
1361.14	555721/1000000	0.00	0.002	420.9	4948/4950 pairs	97/100 genes done
1366.36	557922/1000000	0.00	0.002	421.6	4948/4950 pairs	97/100 genes done
1371.53	560123/1000000	0.00	0.002	425.6	4948/4950 pairs	97/100 genes done
1376.70	562324/1000000	0.00	0.002	425.8	4948/4950 pairs	97/100 genes done
1381.86	564524/1000000	0.00	0.002	426.1	4948/4950 pairs	97/100 genes done
1387.03	566725/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
1392.19	568926/1000000	0.00	0.002	425.9	4948/4950 pairs	97/100 genes done
1397.37	571127/1000000	0.00	0.002	425.0	4948/4950 pairs	97/100 genes done
1402.54	573327/1000000	0.00	0.002	426.1	4948/4950 pairs	97/100 genes done
1407.70	575528/1000000	0.00	0.002	426.6	4948/4950 pairs	97/100 genes done
1412.86	577729/1000000	0.00	0.002	426.3	4948/4950 pairs	97/100 genes done
1418.02	579929/1000000	0.00	0.002	426.7	4948/4950 pairs	97/100 genes done
1423.19	582130/1000000	0.00	0.002	425.5	4948/4950 pairs	97/100 genes done
1428.37	584331/1000000	0.00	0.002	425.0	4948/4950 pairs	97/100 genes done
1433.57	586532/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
1438.75	588732/1000000	0.00	0.002	424.2	4948/4950 pairs	97/100 genes done
1443.94	590933/1000000	0.00	0.002	424.3	4948/4950 pairs	97/100 genes done
1449.10	593134/1000000	0.00	0.002	426.4	4948/4950 pairs	97/100 genes done
1454.31	595335/1000000	0.00	0.002	423.0	4948/4950 pairs	97/100 genes done
1459.44	597535/1000000	0.00	0.002	428.4	4948/4950 pairs	97/100 genes done
1464.51	599736/1000000	0.00	0.002	434.5	4948/4950 pairs	97/100 genes done
1469.58	601937/1000000	0.00	0.002	433.9	4948/4950 pairs	97/100 genes done
1474.66	604138/1000000	0.00	0.002	433.0	4948/4950 pairs	97/100 genes done
1479.74	606338/1000000	0.00	0.002	432.9	4948/4950 pairs	97/100 genes done
1484.78	608539/1000000	0.00	0.002	437.5	4948/4950 pairs	97/100 genes done
1489.86	610740/1000000	0.00	0.002	432.8	4948/4950 pairs	97/100 genes done
1494.94	612941/1000000	0.00	0.002	433.2	4948/4950 pairs	97/100 genes done
1500.04	615141/1000000	0.00	0.002	431.3	4948/4950 pairs	97/100 genes done
1505.14	617342/1000000	0.00	0.002	431.5	4948/4950 pairs	97/100 genes done
1510.33	619543/1000000	0.00	0.002	424.4	4948/4950 pairs	97/100 genes done
1515.57	621744/1000000	0.00	0.002	420.3	4948/4950 pairs	97/100 genes done
1520.83	623944/1000000	0.00	0.002	417.8	4948/4950 pairs	97/100 genes done
1526.05	626145/1000000	0.00	0.002	421.7	4948/4950 pairs	97/100 genes done
1531.22	628346/1000000	0.00	0.002	426.1	4948/4950 pairs	97/100 genes done
1536.37	630546/1000000	0.00	0.002	426.8	4948/4950 pairs	97/100 genes done
1541.55	632747/1000000	0.00	0.002	425.4	4948/4950 pairs	97/100 genes done
1546.70	634948/1000000	0.00	0.002	426.7	4948/4950 pairs	97/100 genes done
1552.23	637149/1000000	0.00	0.003	398.6	4948/4950 pairs	97/100 genes done
1557.65	639349/1000000	0.00	0.002	405.6	4948/4950 pairs	97/100 genes done
1562.88	641550/1000000	0.00	0.002	421.1	4948/4950 pairs	97/100 genes done
1568.33	643751/1000000	0.00	0.002	404.1	4948/4950 pairs	97/100 genes done
1573.45	645952/1000000	0.00	0.002	429.7	4948/4950 pairs	97/100 genes done
1578.65	648152/1000000	0.00	0.002	423.0	4948/4950 pairs	97/100 genes done
1584.09	650353/1000000	0.00	0.002	404.4	4948/4950 pairs	97/100 genes done
1589.33	652554/1000000	0.00	0.002	420.2	4948/4950 pairs	97/100 genes done
1594.57	654755/1000000	0.00	0.002	420.4	4948/4950 pairs	97/100 genes done
1599.80	656955/1000000	0.00	0.002	420.7	4948/4950 pairs	97/100 genes done
1605.06	659156/1000000	0.00	0.002	418.0	4948/4950 pairs	97/100 genes done
1611.64	661357/1000000	0.00	0.003	334.6	4948/4950 pairs	97/100 genes done
1619.17	663558/1000000	0.00	0.003	292.1	4948/4950 pairs	97/100 genes done
1624.66	665758/1000000	0.00	0.002	401.3	4948/4950 pairs	97/100 genes done
1629.86	667959/1000000	0.00	0.002	422.8	4948/4950 pairs	97/100 genes done
1634.92	670160/1000000	0.00	0.002	435.5	4948/4950 pairs	97/100 genes done
1640.03	672360/1000000	0.00	0.002	430.7	4948/4950 pairs	97/100 genes done
1645.11	674561/1000000	0.00	0.002	432.8	4948/4950 pairs	97/100 genes done
1650.21	676762/1000000	0.00	0.002	431.9	4948/4950 pairs	97/100 genes done
1655.23	678963/1000000	0.00	0.002	438.0	4948/4950 pairs	97/100 genes done
1660.29	681163/1000000	0.00	0.002	434.8	4948/4950 pairs	97/100 genes done
1665.35	683364/1000000	0.00	0.002	435.3	4948/4950 pairs	97/100 genes done
1670.41	685565/1000000	0.00	0.002	434.6	4948/4950 pairs	97/100 genes done
1675.45	687766/1000000	0.00	0.002	437.3	4948/4950 pairs	97/100 genes done
1681.04	689966/1000000	0.00	0.003	393.5	4948/4950 pairs	97/100 genes done
1686.22	692167/1000000	0.00	0.002	424.8	4948/4950 pairs	97/100 genes done
1691.38	694368/1000000	0.00	0.002	426.2	4948/4950 pairs	97/100 genes done
1696.56	696569/1000000	0.00	0.002	425.1	4948/4950 pairs	97/100 genes done
1701.65	698769/1000000	0.00	0.002	431.9	4948/4950 pairs	97/100 genes done
1706.90	700970/1000000	0.00	0.002	419.9	4948/4950 pairs	97/100 genes done
1712.09	703171/1000000	0.00	0.002	424.0	4948/4950 pairs	97/100 genes done
1717.28	705372/1000000	0.00	0.002	423.5	4948/4950 pairs	97/100 genes done
1722.44	707572/1000000	0.00	0.002	426.6	4948/4950 pairs	97/100 genes done
1727.63	709773/1000000	0.00	0.002	424.5	4948/4950 pairs	97/100 genes done
1732.83	711974/1000000	0.00	0.002	422.9	4948/4950 pairs	97/100 genes done
1738.01	714175/1000000	0.00	0.002	424.6	4948/4950 pairs	97/100 genes done
1743.25	716375/1000000	0.00	0.002	419.9	4948/4950 pairs	97/100 genes done
1748.43	718576/1000000	0.00	0.002	425.0	4948/4950 pairs	97/100 genes done
1753.84	720777/1000000	0.00	0.002	407.0	4948/4950 pairs	97/100 genes done
1758.94	722977/1000000	0.00	0.002	431.5	4948/4950 pairs	97/100 genes done
1764.22	725178/1000000	0.00	0.002	416.7	4948/4950 pairs	97/100 genes done
1769.30	727379/1000000	0.00	0.002	433.0	4948/4950 pairs	97/100 genes done
1774.59	729580/1000000	0.00	0.002	416.7	4948/4950 pairs	97/100 genes done
1779.61	731780/1000000	0.00	0.002	437.7	4948/4950 pairs	97/100 genes done
1784.63	733981/1000000	0.00	0.002	438.6	4948/4950 pairs	97/100 genes done
1789.68	736182/1000000	0.00	0.002	435.8	4948/4950 pairs	97/100 genes done
1794.68	738383/1000000	0.00	0.002	439.8	4948/4950 pairs	97/100 genes done
1799.69	740583/1000000	0.00	0.002	439.2	4948/4950 pairs	97/100 genes done
1804.72	742784/1000000	0.00	0.002	437.9	4948/4950 pairs	97/100 genes done
1809.76	744985/1000000	0.00	0.002	436.4	4948/4950 pairs	97/100 genes done
1814.80	747186/1000000	0.00	0.002	436.9	4948/4950 pairs	97/100 genes done
1819.86	749386/1000000	0.00	0.002	435.2	4948/4950 pairs	97/100 genes done
1824.88	751587/1000000	0.00	0.002	438.2	4948/4950 pairs	97/100 genes done
1829.92	753788/1000000	0.00	0.002	436.2	4948/4950 pairs	97/100 genes done
1835.00	755989/1000000	0.00	0.002	433.7	4948/4950 pairs	97/100 genes done
1840.06	758189/1000000	0.00	0.002	434.6	4948/4950 pairs	97/100 genes done
1845.12	760390/1000000	0.00	0.002	434.8	4948/4950 pairs	97/100 genes done
1850.26	762591/1000000	0.00	0.002	428.1	4948/4950 pairs	97/100 genes done
1855.35	764791/1000000	0.00	0.002	432.3	4948/4950 pairs	97/100 genes done
1860.42	766992/1000000	0.00	0.002	434.7	4948/4950 pairs	97/100 genes done
1865.43	769193/1000000	0.00	0.002	438.8	4948/4950 pairs	97/100 genes done
1870.47	771394/1000000	0.00	0.002	436.7	4948/4950 pairs	97/100 genes done
1875.50	773594/1000000	0.00	0.002	438.1	4948/4950 pairs	97/100 genes done
1880.54	775795/1000000	0.00	0.002	436.3	4948/4950 pairs	97/100 genes done
1885.57	777996/1000000	0.00	0.002	437.5	4948/4950 pairs	97/100 genes done
1890.61	780197/1000000	0.00	0.002	436.6	4948/4950 pairs	97/100 genes done
1895.66	782397/1000000	0.00	0.002	436.0	4948/4950 pairs	97/100 genes done
1900.70	784598/1000000	0.00	0.002	436.1	4948/4950 pairs	97/100 genes done
1905.78	786799/1000000	0.00	0.002	433.7	4948/4950 pairs	97/100 genes done
1910.91	789000/1000000	0.00	0.002	428.7	4948/4950 pairs	97/100 genes done
1916.06	791200/1000000	0.00	0.002	427.1	4948/4950 pairs	97/100 genes done
1921.22	793401/1000000	0.00	0.002	427.0	4948/4950 pairs	97/100 genes done
1926.36	795602/1000000	0.00	0.002	428.0	4948/4950 pairs	97/100 genes done
1931.49	797803/1000000	0.00	0.002	429.1	4948/4950 pairs	97/100 genes done
1936.62	800003/1000000	0.00	0.002	429.0	4948/4950 pairs	97/100 genes done
1941.76	802204/1000000	0.00	0.002	427.9	4948/4950 pairs	97/100 genes done
1946.91	804405/1000000	0.00	0.002	427.2	4948/4950 pairs	97/100 genes done
1952.04	806606/1000000	0.00	0.002	429.5	4948/4950 pairs	97/100 genes done
1957.18	808806/1000000	0.00	0.002	428.2	4948/4950 pairs	97/100 genes done
1962.32	811007/1000000	0.00	0.002	428.3	4948/4950 pairs	97/100 genes done
1967.48	813208/1000000	0.00	0.002	425.9	4948/4950 pairs	97/100 genes done
1972.64	815408/1000000	0.00	0.002	426.5	4948/4950 pairs	97/100 genes done
1977.79	817609/1000000	0.00	0.002	427.3	4948/4950 pairs	97/100 genes done
1982.95	819810/1000000	0.00	0.002	426.9	4948/4950 pairs	97/100 genes done
1988.09	822011/1000000	0.00	0.002	427.7	4948/4950 pairs	97/100 genes done
1993.26	824211/1000000	0.00	0.002	425.9	4948/4950 pairs	97/100 genes done
1998.41	826412/1000000	0.00	0.002	427.3	4948/4950 pairs	97/100 genes done
2003.56	828613/1000000	0.00	0.002	427.6	4948/4950 pairs	97/100 genes done
2008.72	830814/1000000	0.00	0.002	426.7	4948/4950 pairs	97/100 genes done
2014.02	833014/1000000	0.00	0.002	414.9	4948/4950 pairs	97/100 genes done
2019.20	835215/1000000	0.00	0.002	424.8	4948/4950 pairs	97/100 genes done
2024.38	837416/1000000	0.00	0.002	424.8	4948/4950 pairs	97/100 genes done
2029.60	839617/1000000	0.00	0.002	422.0	4948/4950 pairs	97/100 genes done
2034.78	841817/1000000	0.00	0.002	424.4	4948/4950 pairs	97/100 genes done
2040.07	844018/1000000	0.00	0.002	415.8	4948/4950 pairs	97/100 genes done
2045.47	846219/1000000	0.00	0.002	407.8	4948/4950 pairs	97/100 genes done
2050.69	848420/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
2055.99	850620/1000000	0.00	0.002	415.2	4948/4950 pairs	97/100 genes done
2061.71	852821/1000000	0.00	0.003	384.8	4948/4950 pairs	97/100 genes done
2066.95	855022/1000000	0.00	0.002	419.5	4948/4950 pairs	97/100 genes done
2072.18	857222/1000000	0.00	0.002	421.1	4948/4950 pairs	97/100 genes done
2077.70	859423/1000000	0.00	0.003	398.5	4948/4950 pairs	97/100 genes done
2082.96	861624/1000000	0.00	0.002	418.8	4948/4950 pairs	97/100 genes done
2088.21	863825/1000000	0.00	0.002	418.6	4948/4950 pairs	97/100 genes done
2093.60	866025/1000000	0.00	0.002	408.4	4948/4950 pairs	97/100 genes done
2099.19	868226/1000000	0.00	0.003	394.1	4948/4950 pairs	97/100 genes done
2104.47	870427/1000000	0.00	0.002	416.2	4948/4950 pairs	97/100 genes done
2109.76	872628/1000000	0.00	0.002	416.2	4948/4950 pairs	97/100 genes done
2115.08	874828/1000000	0.00	0.002	413.8	4948/4950 pairs	97/100 genes done
2120.26	877029/1000000	0.00	0.002	424.7	4948/4950 pairs	97/100 genes done
2125.70	879230/1000000	0.00	0.002	404.7	4948/4950 pairs	97/100 genes done
2131.24	881431/1000000	0.00	0.003	397.4	4948/4950 pairs	97/100 genes done
2136.63	883631/1000000	0.00	0.002	408.3	4948/4950 pairs	97/100 genes done
2142.05	885832/1000000	0.00	0.002	405.5	4948/4950 pairs	97/100 genes done
2147.72	888033/1000000	0.00	0.003	388.1	4948/4950 pairs	97/100 genes done
2153.09	890234/1000000	0.00	0.002	410.1	4948/4950 pairs	97/100 genes done
2158.72	892434/1000000	0.00	0.003	391.1	4948/4950 pairs	97/100 genes done
2164.96	894635/1000000	0.00	0.003	352.3	4948/4950 pairs	97/100 genes done
2170.61	896836/1000000	0.00	0.003	389.6	4948/4950 pairs	97/100 genes done
2175.98	899037/1000000	0.00	0.002	410.5	4948/4950 pairs	97/100 genes done
2181.38	901237/1000000	0.00	0.002	407.0	4948/4950 pairs	97/100 genes done
2186.62	903438/1000000	0.00	0.002	420.1	4948/4950 pairs	97/100 genes done
2192.01	905639/1000000	0.00	0.002	408.1	4948/4950 pairs	97/100 genes done
2197.22	907839/1000000	0.00	0.002	422.4	4948/4950 pairs	97/100 genes done
2202.84	910040/1000000	0.00	0.003	392.0	4948/4950 pairs	97/100 genes done
2208.12	912241/1000000	0.00	0.002	416.5	4948/4950 pairs	97/100 genes done
2213.35	914442/1000000	0.00	0.002	420.8	4948/4950 pairs	97/100 genes done
2218.56	916642/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
2223.79	918843/1000000	0.00	0.002	421.3	4948/4950 pairs	97/100 genes done
2229.00	921044/1000000	0.00	0.002	421.9	4948/4950 pairs	97/100 genes done
2234.29	923245/1000000	0.00	0.002	416.7	4948/4950 pairs	97/100 genes done
2239.55	925445/1000000	0.00	0.002	417.8	4948/4950 pairs	97/100 genes done
2244.78	927646/1000000	0.00	0.002	421.2	4948/4950 pairs	97/100 genes done
2250.00	929847/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
2255.19	932048/1000000	0.00	0.002	423.4	4948/4950 pairs	97/100 genes done
2260.79	934248/1000000	0.00	0.003	393.3	4948/4950 pairs	97/100 genes done
2266.00	936449/1000000	0.00	0.002	422.1	4948/4950 pairs	97/100 genes done
2271.21	938650/1000000	0.00	0.002	422.8	4948/4950 pairs	97/100 genes done
2276.42	940851/1000000	0.00	0.002	422.5	4948/4950 pairs	97/100 genes done
2281.70	943051/1000000	0.00	0.002	416.1	4948/4950 pairs	97/100 genes done
2287.10	945252/1000000	0.00	0.002	408.2	4948/4950 pairs	97/100 genes done
2292.56	947453/1000000	0.00	0.002	402.7	4948/4950 pairs	97/100 genes done
2297.83	949653/1000000	0.00	0.002	417.7	4948/4950 pairs	97/100 genes done
2303.67	951854/1000000	0.00	0.003	377.0	4948/4950 pairs	97/100 genes done
2309.02	954055/1000000	0.00	0.002	410.9	4948/4950 pairs	97/100 genes done
2314.44	956256/1000000	0.00	0.002	406.2	4948/4950 pairs	97/100 genes done
2319.83	958456/1000000	0.00	0.002	408.6	4948/4950 pairs	97/100 genes done
2325.46	960657/1000000	0.00	0.003	390.8	4948/4950 pairs	97/100 genes done
2330.79	962858/1000000	0.00	0.002	412.4	4948/4950 pairs	97/100 genes done
2336.01	965059/1000000	0.00	0.002	421.9	4948/4950 pairs	97/100 genes done
2341.24	967259/1000000	0.00	0.002	420.8	4948/4950 pairs	97/100 genes done
2347.01	969460/1000000	0.00	0.003	381.6	4948/4950 pairs	97/100 genes done
2352.26	971661/1000000	0.00	0.002	418.9	4948/4950 pairs	97/100 genes done
2357.64	973862/1000000	0.00	0.002	409.3	4948/4950 pairs	97/100 genes done
2362.99	976062/1000000	0.00	0.002	411.5	4948/4950 pairs	97/100 genes done
2368.42	978263/1000000	0.00	0.002	404.7	4948/4950 pairs	97/100 genes done
2373.80	980464/1000000	0.00	0.002	409.1	4948/4950 pairs	97/100 genes done
2379.27	982665/1000000	0.00	0.002	402.4	4948/4950 pairs	97/100 genes done
2384.49	984865/1000000	0.00	0.002	421.7	4948/4950 pairs	97/100 genes done
2389.71	987066/1000000	0.00	0.002	421.8	4948/4950 pairs	97/100 genes done
2395.50	989267/1000000	0.00	0.003	380.2	4948/4950 pairs	97/100 genes done
2400.90	991468/1000000	0.00	0.002	407.0	4948/4950 pairs	97/100 genes done
2406.19	993668/1000000	0.00	0.002	416.4	4948/4950 pairs	97/100 genes done
2411.38	995869/1000000	0.00	0.002	423.9	4948/4950 pairs	97/100 genes done
2416.67	998070/1000000	0.00	0.002	415.8	4948/4950 pairs	97/100 genes done

Top gene-gene pairs:
EGFR	KRAS	0.000150	0.611451	anti-correlated
NAV3	NRXN1	0.000247	0.611451	correlated
REG3A	SEC14L1	0.000513	0.775923	correlated
GABRB3	LRRTM4	0.001439	0.775923	correlated
OR2T34	ADAMTS16	0.002252	0.775923	correlated
ADAMTS2	OR52E4	0.002284	0.775923	correlated
REG3A	OR8H3	0.002411	0.775923	correlated
CD5L	LPA	0.003082	0.775923	correlated
HEATR7B2	HGF	0.004296	0.775923	correlated
THEMIS	SPANXN2	0.004499	0.775923	correlated
SEC14L1	OR8H3	0.005141	0.775923	correlated
OR5D14	RPL10L	0.005747	0.775923	correlated
ZNF676	OR4S2	0.005814	0.775923	correlated
OR4C16	OR2T4	0.006745	0.775923	correlated
KRAS	TP53	0.006969	0.775923	anti-correlated
OR5I1	LPA	0.007286	0.775923	correlated
SPANXN2	OR5F1	0.009901	0.775923	correlated
NAV3	KCNT2	0.010444	0.775923	correlated
MARCH11	LRRIQ1	0.011080	0.775923	correlated
HGF	EPHB1	0.011173	0.775923	correlated
HEATR7B2	SPANXN2	0.011561	0.775923	correlated
MARCH11	OR8H3	0.012085	0.775923	correlated
ASTN2	RPL10L	0.013699	0.775923	correlated
ZNF676	OR5I1	0.015326	0.775923	correlated
THEMIS	OR5F1	0.017778	0.775923	correlated
RIMS2	NRXN1	0.018349	0.775923	correlated
ZIC4	KCNT2	0.018349	0.775923	correlated
OR8H3	NRXN1	0.018519	0.775923	correlated
HGF	KCNT2	0.020202	0.775923	correlated
ZNF676	EPHB1	0.020305	0.775923	correlated
ASTN2	LRRIQ3	0.020833	0.775923	correlated
TBX22	LPA	0.020833	0.775923	correlated
ZNF492	ADAMTS2	0.021622	0.775923	correlated
EPHA6	TBX22	0.023256	0.775923	correlated
OR4A5	C1orf49	0.023529	0.775923	correlated
CDKN2A	TP53	0.024540	0.775923	correlated
EPHB1	NRXN1	0.025000	0.775923	correlated
NRG3	LRRIQ3	0.025157	0.775923	correlated
LRRIQ1	OR8H3	0.025157	0.775923	correlated
MUC7	RIMS2	0.026316	0.775923	correlated
TP53	OR2T4	0.026667	0.775923	correlated
C18orf34	PCK1	0.026667	0.775923	correlated
CD5L	SPANXN2	0.027397	0.775923	correlated
HEATR7B2	EPHB1	0.027972	0.775923	correlated
ASTN2	TMTC1	0.028777	0.775923	correlated
DACH1	NRXN1	0.029197	0.775923	correlated
CDH10	NRXN1	0.029630	0.775923	correlated
OR4C16	TBX22	0.030075	0.775923	correlated
REG3A	SPANXN2	0.030075	0.775923	correlated
CD5L	REG3A	0.030303	0.775923	correlated
OR2L8	HGF	0.030303	0.775923	correlated
MAGEC1	TBX22	0.030534	0.775923	correlated
KCNT2	NRXN1	0.030769	0.775923	correlated
CNBD1	SPANXN2	0.031250	0.775923	correlated
EPHB1	AKR1B10	0.031496	0.775923	correlated
KRAS	FLI1	0.032370	0.775923	anti-correlated
EGFR	KEAP1	0.034020	0.775923	anti-correlated
SPRR3	GBA3	0.035088	0.775923	correlated
LRRTM4	NRXN1	0.035398	0.775923	correlated
C18orf34	CXorf59	0.036697	0.775923	correlated
Analyzing power per gene...
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 {Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18094 18000/18094 
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 {Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18094 18000/18094 
Generating gene coverage plots...
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/1.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/2.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/3.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/4.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/5.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/6.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/7.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/8.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/9.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/10.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/11.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/12.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/13.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/14.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/15.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/16.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/17.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/18.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/19.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/20.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/21.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/22.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/23.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/24.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/25.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/26.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/27.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/28.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/29.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/30.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/31.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/32.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/33.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/34.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/35.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/36.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/37.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/38.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/39.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/40.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/41.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/42.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/43.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/44.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/45.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/46.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/47.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/48.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/49.png
Superimposing mutations
Outputting figure to ./LUAD.gene_coverage_plots/50.png
generate_gene_coverage_plots finished
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 0 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200
*** Prepare stdandard out:
cat: prepare.out: No such file or directory
*** Prepare stdandard err:
cat: prepare.err: No such file or directory
*** Scatter stdandard out:
Sender: LSF System <lsf@node1544>
Subject: Job 4421656: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000001> was used as the working directory.
Started at Wed Oct 24 17:29:23 2012
Results reported at Wed Oct 24 17:47:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000001.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000001.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 1  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000001.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1238.24 sec.
    Max Memory :      5352 MB
    Max Swap   :      7691 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
1
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 1
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 1: processing genes 1 - 90
Calculating significance of each gene.
Using projection method.
1	A1BG	1
2	A1CF	8.958411e-02
3	A2BP1	8.896149e-01
4	A2M	5.535670e-02
5	A2ML1	9.996786e-01
6	A4GALT	1
7	A4GNT	1
8	AAAS	9.806434e-01
9	AACS	9.851437e-01
10	AADAC	3.531880e-01
11	AADACL2	8.154905e-01
12	AADACL3	5.714155e-01
13	AADACL4	8.981797e-01
14	AADAT	7.821846e-01
15	AAGAB	7.278743e-01
16	AAK1	3.255721e-01
17	AAMP	6.106984e-01
18	AANAT	1
19	AARS	9.971412e-01
20	AARS2	9.468989e-01
21	AARSD1	6.672238e-01
22	AASDH	5.345176e-01
23	AASDHPPT	4.589240e-01
24	AASS	9.957185e-01
25	AATF	9.416953e-01
26	AATK	9.428108e-01
27	ABAT	7.035914e-01
28	ABCA1	9.997140e-01
29	ABCA10	2.408217e-01
30	ABCA12	9.962588e-01
31	ABCA13	9.999981e-01
32	ABCA2	9.971318e-01
33	ABCA3	9.990445e-01
34	ABCA4	9.999936e-01
35	ABCA5	9.816062e-01
36	ABCA6	3.273009e-01
37	ABCA7	1
38	ABCA8	2.291273e-01
39	ABCA9	5.755439e-01
40	ABCB1	7.049357e-01
41	ABCB10	3.878598e-02
42	ABCB11	8.245265e-01
43	ABCB4	2.946921e-01
44	ABCB5	2.841889e-01
45	ABCB6	9.558165e-01
46	ABCB7	9.692641e-01
47	ABCB8	9.801778e-01
48	ABCB9	9.749896e-01
49	ABCC1	9.994305e-01
50	ABCC10	9.965853e-01
51	ABCC11	1
52	ABCC12	1.395231e-01
53	ABCC2	1
54	ABCC3	8.562573e-01
55	ABCC4	4.431135e-01
56	ABCC5	1
57	ABCC6	9.975917e-01
In gene ABCC8 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 4542    n = 1	mu =   6.02e-07
58	ABCC8	9.424553e-01
59	ABCC9	9.599500e-01
60	ABCD1	1
61	ABCD2	1.866057e-02
62	ABCD3	8.873387e-01
63	ABCD4	8.635921e-01
64	ABCE1	1
65	ABCF1	9.770003e-01
66	ABCF2	8.113613e-01
67	ABCF3	8.967115e-01
In gene ABCG1 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 2103    n = 1	mu =   6.02e-07
68	ABCG1	9.548385e-01
69	ABCG2	1
70	ABCG4	1
71	ABCG5	6.630335e-01
72	ABCG8	5.139174e-01
73	ABHD1	7.789067e-01
74	ABHD10	2.429223e-01
75	ABHD11	6.661123e-01
76	ABHD12	1
77	ABHD12B	2.568386e-01
78	ABHD13	3.765886e-01
79	ABHD14A	1
80	ABHD14B	1
81	ABHD15	8.890674e-01
82	ABHD2	8.434475e-01
83	ABHD3	1
84	ABHD4	1
85	ABHD5	1
86	ABHD6	4.701728e-01
87	ABHD8	7.536869e-01
88	ABI1	8.072602e-01
89	ABI2	1
90	ABI3	6.435443e-01
Done

Running MutSig 2:
Scatter job 1: processing genes 1 - 90
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ABCA13
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
ABCA13   10000 perm   6 sec   (1622 perm/sec)   p_kst 5.911000e-01   p_cons 2.997000e-01   p_joint 6.142000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA13.44_15254_10000_0.5911_0.2997_0.6142.png
                gene_name: ABCA13
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 1 percent done.
ABCB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
Cons ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
KS ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
ABCB5   10000 perm   3 sec   (3231 perm/sec)   p_kst 5.420000e-02   p_cons 2.309000e-01   p_joint 9.410000e-02

Joint ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
Cons ci ratio: 4.875723e-02	ci left: 2.382585e-01	ci right 2.502159e-01	k: 4884	n:20000
KS ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
ABCB5   20000 perm   7 sec   (3004 perm/sec)   p_kst 5.405000e-02   p_cons 2.442000e-01   p_joint 5.810000e-02

Joint ci ratio: 7.322328e-02	ci left: 8.399812e-02	ci right 9.041542e-02	k: 2615	n:30000
Cons ci ratio: 3.974743e-02	ci left: 2.399428e-01	ci right 2.497067e-01	k: 7344	n:30000
KS ci ratio: 9.491161e-02	ci left: 5.124094e-02	ci right 5.637923e-02	k: 1613	n:30000
ABCB5   30000 perm   10 sec   (2867 perm/sec)   p_kst 5.376667e-02   p_cons 2.448000e-01   p_joint 8.716667e-02

Outputting figure to mutsig2_images.part000000000001/ABCB5.27_3923_30000_0.053767_0.2448_0.087167.png
                gene_name: ABCB5
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 3 percent done.
ABCC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
ABCC9   10000 perm   3 sec   (3191 perm/sec)   p_kst 2.798000e-01   p_cons 8.907000e-01   p_joint 3.820000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC9.25_4944_10000_0.2798_0.8907_0.382.png
                gene_name: ABCC9
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 4 percent done.
ABCA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
ABCA12   10000 perm   4 sec   (2731 perm/sec)   p_kst 5.580000e-01   p_cons 1.795000e-01   p_joint 3.303000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA12.21_8031_10000_0.558_0.1795_0.3303.png
                gene_name: ABCA12
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 6 percent done.
ABCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
Cons ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
KS ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
ABCA4   10000 perm   3 sec   (2973 perm/sec)   p_kst 7.320000e-02   p_cons 6.452000e-01   p_joint 1.253000e-01

Joint ci ratio: 6.041313e-02	ci left: 1.686204e-01	ci right 1.791746e-01	k: 3477	n:20000
Cons ci ratio: 2.147198e-02	ci left: 6.181976e-01	ci right 6.316661e-01	k: 12499	n:20000
KS ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
ABCA4   20000 perm   7 sec   (2802 perm/sec)   p_kst 7.925000e-02   p_cons 6.249500e-01   p_joint 1.738500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA4.21_7022_20000_0.07925_0.62495_0.17385.png
                gene_name: ABCA4
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 7 percent done.
ABCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
KS ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
ABCB1   10000 perm   3 sec   (3599 perm/sec)   p_kst 1.719000e-01   p_cons 9.470000e-02   p_joint 8.770000e-02

Joint ci ratio: 8.322351e-02	ci left: 9.567937e-02	ci right 1.040374e-01	k: 1996	n:20000
Cons ci ratio: 8.808395e-02	ci left: 8.611760e-02	ci right 9.410203e-02	k: 1801	n:20000
KS ci ratio: 6.096558e-02	ci left: 1.660520e-01	ci right 1.765438e-01	k: 3425	n:20000
ABCB1   20000 perm   6 sec   (3310 perm/sec)   p_kst 1.712500e-01   p_cons 9.005000e-02   p_joint 9.980000e-02

Outputting figure to mutsig2_images.part000000000001/ABCB1.20_3951_20000_0.17125_0.09005_0.0998.png
                gene_name: ABCB1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 8 percent done.
ABCC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
Cons ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
KS ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
ABCC12   10000 perm   3 sec   (3555 perm/sec)   p_kst 1.511000e-01   p_cons 5.743000e-01   p_joint 2.228000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC12.18_4196_10000_0.1511_0.5743_0.2228.png
                gene_name: ABCC12
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
ABCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
ABCB4   10000 perm   3 sec   (3773 perm/sec)   p_kst 7.478000e-01   p_cons 6.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCB4.17_3969_10000_0.7478_0.6605_1.png
                gene_name: ABCB4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ABCC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
Cons ci ratio: 3.678368e-02	ci left: 5.218619e-01	ci right 5.415197e-01	k: 5317	n:10000
KS ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
ABCC11   10000 perm   3 sec   (3557 perm/sec)   p_kst 6.075000e-01   p_cons 5.317000e-01   p_joint 7.541000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC11.17_4265_10000_0.6075_0.5317_0.7541.png
                gene_name: ABCC11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 12 percent done.
ABCA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
ABCA8   10000 perm   3 sec   (3616 perm/sec)   p_kst 2.499000e-01   p_cons 1.219000e-01   p_joint 1.567000e-01

Joint ci ratio: 5.187451e-02	ci left: 2.163056e-01	ci right 2.278753e-01	k: 4441	n:20000
Cons ci ratio: 7.609137e-02	ci left: 1.126747e-01	ci right 1.216370e-01	k: 2342	n:20000
KS ci ratio: 4.570473e-02	ci left: 2.627144e-01	ci right 2.750529e-01	k: 5377	n:20000
ABCA8   20000 perm   6 sec   (3306 perm/sec)   p_kst 2.688500e-01   p_cons 1.171000e-01   p_joint 2.220500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA8.16_4894_20000_0.26885_0.1171_0.22205.png
                gene_name: ABCA8
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 14 percent done.
ABCB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
Cons ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
KS ci ratio: 2.966580e-02	ci left: 6.262801e-01	ci right 6.452408e-01	k: 6358	n:10000
ABCB11   10000 perm   3 sec   (3616 perm/sec)   p_kst 6.358000e-01   p_cons 4.900000e-03   p_joint 2.750000e-02

Joint ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
Cons ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
KS ci ratio: 2.115256e-02	ci left: 6.252223e-01	ci right 6.386393e-01	k: 12639	n:20000
ABCB11   20000 perm   6 sec   (3364 perm/sec)   p_kst 6.319500e-01   p_cons 5.200000e-03   p_joint 2.595000e-02

Joint ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
Cons ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
KS ci ratio: 1.719400e-02	ci left: 6.285530e-01	ci right 6.394877e-01	k: 19021	n:30000
ABCB11   30000 perm   9 sec   (3236 perm/sec)   p_kst 6.340333e-01   p_cons 5.666667e-03   p_joint 3.263333e-02

Joint ci ratio: 9.761879e-02	ci left: 3.685528e-02	ci right 4.066205e-02	k: 1549	n:40000
Cons ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
KS ci ratio: 1.484433e-02	ci left: 6.307362e-01	ci right 6.401941e-01	k: 25419	n:40000
ABCB11   40000 perm   13 sec   (3160 perm/sec)   p_kst 6.354750e-01   p_cons 5.675000e-03   p_joint 3.872500e-02

Joint ci ratio: 9.999294e-02	ci left: 2.832695e-02	ci right 3.132797e-02	k: 1490	n:50000
Cons ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
KS ci ratio: 1.326105e-02	ci left: 6.318049e-01	ci right 6.402593e-01	k: 31802	n:50000
ABCB11   50000 perm   16 sec   (3107 perm/sec)   p_kst 6.360400e-01   p_cons 5.760000e-03   p_joint 2.980000e-02

Joint ci ratio: 8.141486e-02	ci left: 3.568345e-02	ci right 3.872820e-02	k: 2231	n:60000
Cons ci ratio: 2.107438e-01	ci left: 5.129090e-03	ci right 6.352797e-03	k: 343	n:60000
KS ci ratio: 1.210017e-02	ci left: 6.323858e-01	ci right 6.401010e-01	k: 38175	n:60000
ABCB11   60000 perm   20 sec   (3057 perm/sec)   p_kst 6.362500e-01   p_cons 5.716667e-03   p_joint 3.718333e-02

Joint ci ratio: 8.115237e-02	ci left: 3.094656e-02	ci right 3.357812e-02	k: 2257	n:70000
Cons ci ratio: 2.096096e-01	ci left: 4.450330e-03	ci right 5.505632e-03	k: 347	n:70000
KS ci ratio: 1.121211e-02	ci left: 6.322798e-01	ci right 6.394232e-01	k: 44510	n:70000
ABCB11   70000 perm   23 sec   (3009 perm/sec)   p_kst 6.358571e-01   p_cons 4.957143e-03   p_joint 3.224286e-02

Joint ci ratio: 7.517042e-02	ci left: 3.163784e-02	ci right 3.412118e-02	k: 2629	n:80000
Cons ci ratio: 1.923909e-01	ci left: 4.665761e-03	ci right 5.670639e-03	k: 412	n:80000
KS ci ratio: 1.048164e-02	ci left: 6.327925e-01	ci right 6.394726e-01	k: 50891	n:80000
ABCB11   80000 perm   27 sec   (2964 perm/sec)   p_kst 6.361375e-01   p_cons 5.150000e-03   p_joint 3.286250e-02

Joint ci ratio: 6.405008e-02	ci left: 3.867434e-02	ci right 4.124430e-02	k: 3595	n:90000
Cons ci ratio: 1.661815e-01	ci left: 5.633667e-03	ci right 6.665220e-03	k: 552	n:90000
KS ci ratio: 9.886794e-03	ci left: 6.327687e-01	ci right 6.390669e-01	k: 57233	n:90000
ABCB11   90000 perm   31 sec   (2923 perm/sec)   p_kst 6.359222e-01   p_cons 6.133333e-03   p_joint 3.994444e-02

Joint ci ratio: 5.541801e-02	ci left: 4.632795e-02	ci right 4.897836e-02	k: 4764	n:100000
Cons ci ratio: 1.579702e-01	ci left: 5.636380e-03	ci right 6.612599e-03	k: 611	n:100000
KS ci ratio: 9.379694e-03	ci left: 6.329188e-01	ci right 6.388933e-01	k: 63591	n:100000
ABCB11   100000 perm   35 sec   (2883 perm/sec)   p_kst 6.359100e-01   p_cons 6.110000e-03   p_joint 4.764000e-02

Joint ci ratio: 5.557441e-02	ci left: 4.206886e-02	ci right 4.448257e-02	k: 4759	n:110000
Cons ci ratio: 1.514357e-01	ci left: 5.595883e-03	ci right 6.521360e-03	k: 665	n:110000
KS ci ratio: 8.948655e-03	ci left: 6.327752e-01	ci right 6.384722e-01	k: 69919	n:110000
ABCB11   110000 perm   39 sec   (2847 perm/sec)   p_kst 6.356273e-01   p_cons 6.045455e-03   p_joint 4.326364e-02

Joint ci ratio: 5.536491e-02	ci left: 3.898869e-02	ci right 4.121694e-02	k: 4811	n:120000
Cons ci ratio: 1.449431e-01	ci left: 5.619054e-03	ci right 6.505072e-03	k: 726	n:120000
KS ci ratio: 8.568966e-03	ci left: 6.328279e-01	ci right 6.382822e-01	k: 76267	n:120000
ABCB11   120000 perm   43 sec   (2811 perm/sec)   p_kst 6.355583e-01   p_cons 6.050000e-03   p_joint 4.009167e-02

Joint ci ratio: 5.264299e-02	ci left: 3.982977e-02	ci right 4.199077e-02	k: 5317	n:130000
Cons ci ratio: 1.408475e-01	ci left: 5.505740e-03	ci right 6.347297e-03	k: 769	n:130000
KS ci ratio: 8.236846e-03	ci left: 6.327074e-01	ci right 6.379481e-01	k: 82593	n:130000
ABCB11   130000 perm   47 sec   (2776 perm/sec)   p_kst 6.353308e-01   p_cons 5.915385e-03   p_joint 4.090000e-02

Joint ci ratio: 5.186735e-02	ci left: 3.818234e-02	ci right 4.022251e-02	k: 5487	n:140000
Cons ci ratio: 1.366581e-01	ci left: 5.443417e-03	ci right 6.248685e-03	k: 817	n:140000
KS ci ratio: 7.933106e-03	ci left: 6.330441e-01	ci right 6.380932e-01	k: 88980	n:140000
ABCB11   140000 perm   51 sec   (2742 perm/sec)   p_kst 6.355714e-01   p_cons 5.835714e-03   p_joint 3.919286e-02

Joint ci ratio: 5.031831e-02	ci left: 3.790733e-02	ci right 3.987055e-02	k: 5832	n:150000
Cons ci ratio: 1.319054e-01	ci left: 5.467091e-03	ci right 6.245529e-03	k: 877	n:150000
KS ci ratio: 7.662646e-03	ci left: 6.332187e-01	ci right 6.380961e-01	k: 95349	n:150000
ABCB11   150000 perm   55 sec   (2710 perm/sec)   p_kst 6.356600e-01   p_cons 5.846667e-03   p_joint 3.888000e-02

Joint ci ratio: 5.134901e-02	ci left: 3.424060e-02	ci right 3.605130e-02	k: 5622	n:160000
Cons ci ratio: 1.267360e-01	ci left: 5.566909e-03	ci right 6.326161e-03	k: 950	n:160000
KS ci ratio: 7.424294e-03	ci left: 6.329860e-01	ci right 6.377091e-01	k: 101656	n:160000
ABCB11   160000 perm   60 sec   (2677 perm/sec)   p_kst 6.353500e-01   p_cons 5.937500e-03   p_joint 3.513750e-02

Joint ci ratio: 4.847146e-02	ci left: 3.614836e-02	ci right 3.794983e-02	k: 6297	n:170000
Cons ci ratio: 1.232245e-01	ci left: 5.552856e-03	ci right 6.287676e-03	k: 1005	n:170000
KS ci ratio: 7.212184e-03	ci left: 6.324412e-01	ci right 6.370248e-01	k: 107905	n:170000
ABCB11   170000 perm   64 sec   (2643 perm/sec)   p_kst 6.347353e-01   p_cons 5.911765e-03   p_joint 3.704118e-02

Joint ci ratio: 4.785021e-02	ci left: 3.508369e-02	ci right 3.680907e-02	k: 6469	n:180000
Cons ci ratio: 1.197627e-01	ci left: 5.562183e-03	ci right 6.276093e-03	k: 1064	n:180000
KS ci ratio: 7.005152e-03	ci left: 6.327599e-01	ci right 6.372135e-01	k: 114298	n:180000
ABCB11   180000 perm   69 sec   (2615 perm/sec)   p_kst 6.349889e-01   p_cons 5.911111e-03   p_joint 3.593889e-02

Joint ci ratio: 4.572457e-02	ci left: 3.638991e-02	ci right 3.809793e-02	k: 7075	n:190000
Cons ci ratio: 1.164209e-01	ci left: 5.586117e-03	ci right 6.281718e-03	k: 1126	n:190000
KS ci ratio: 6.818850e-03	ci left: 6.327832e-01	ci right 6.371180e-01	k: 120641	n:190000
ABCB11   190000 perm   73 sec   (2587 perm/sec)   p_kst 6.349526e-01   p_cons 5.926316e-03   p_joint 3.723684e-02

Joint ci ratio: 4.539762e-02	ci left: 3.512350e-02	ci right 3.675998e-02	k: 7187	n:200000
Cons ci ratio: 1.137782e-01	ci left: 5.564179e-03	ci right 6.240263e-03	k: 1179	n:200000
KS ci ratio: 6.648526e-03	ci left: 6.326754e-01	ci right 6.369007e-01	k: 126958	n:200000
ABCB11   200000 perm   78 sec   (2557 perm/sec)   p_kst 6.347900e-01   p_cons 5.895000e-03   p_joint 3.593500e-02

Joint ci ratio: 4.445160e-02	ci left: 3.491519e-02	ci right 3.650719e-02	k: 7498	n:210000
Cons ci ratio: 1.113985e-01	ci left: 5.535231e-03	ci right 6.192807e-03	k: 1230	n:210000
KS ci ratio: 6.482096e-03	ci left: 6.331703e-01	ci right 6.372926e-01	k: 133399	n:210000
ABCB11   210000 perm   83 sec   (2530 perm/sec)   p_kst 6.352333e-01   p_cons 5.857143e-03   p_joint 3.570476e-02

Joint ci ratio: 4.912229e-02	ci left: 2.744034e-02	ci right 2.882668e-02	k: 6188	n:220000
Cons ci ratio: 1.136637e-01	ci left: 5.071519e-03	ci right 5.687078e-03	k: 1182	n:220000
KS ci ratio: 6.333768e-03	ci left: 6.331663e-01	ci right 6.371938e-01	k: 139740	n:220000
ABCB11   220000 perm   88 sec   (2503 perm/sec)   p_kst 6.351818e-01   p_cons 5.372727e-03   p_joint 2.812727e-02

Joint ci ratio: 4.438868e-02	ci left: 3.206720e-02	ci right 3.352721e-02	k: 7542	n:230000
Cons ci ratio: 1.107954e-01	ci left: 5.113023e-03	ci right 5.716936e-03	k: 1244	n:230000
KS ci ratio: 6.187624e-03	ci left: 6.337294e-01	ci right 6.376672e-01	k: 146211	n:230000
ABCB11   230000 perm   93 sec   (2474 perm/sec)   p_kst 6.357000e-01   p_cons 5.408696e-03   p_joint 3.279130e-02

Joint ci ratio: 4.355418e-02	ci left: 3.193843e-02	ci right 3.336455e-02	k: 7835	n:240000
Cons ci ratio: 1.082588e-01	ci left: 5.139083e-03	ci right 5.731291e-03	k: 1303	n:240000
KS ci ratio: 6.057344e-03	ci left: 6.337710e-01	ci right 6.376257e-01	k: 152568	n:240000
ABCB11   240000 perm   98 sec   (2449 perm/sec)   p_kst 6.357000e-01   p_cons 5.429167e-03   p_joint 3.264583e-02

Joint ci ratio: 4.584974e-02	ci left: 2.775628e-02	ci right 2.906269e-02	k: 7101	n:250000
Cons ci ratio: 1.061633e-01	ci left: 5.135941e-03	ci right 5.715615e-03	k: 1355	n:250000
KS ci ratio: 5.940345e-03	ci left: 6.333896e-01	ci right 6.371673e-01	k: 158820	n:250000
ABCB11   250000 perm   103 sec   (2424 perm/sec)   p_kst 6.352800e-01   p_cons 5.420000e-03   p_joint 2.840400e-02

Joint ci ratio: 4.633021e-02	ci left: 2.617498e-02	ci right 2.742021e-02	k: 6966	n:260000
Cons ci ratio: 1.037781e-01	ci left: 5.174357e-03	ci right 5.744445e-03	k: 1418	n:260000
KS ci ratio: 5.825704e-03	ci left: 6.333694e-01	ci right 6.370738e-01	k: 165158	n:260000
ABCB11   260000 perm   108 sec   (2400 perm/sec)   p_kst 6.352231e-01   p_cons 5.453846e-03   p_joint 2.679231e-02

Joint ci ratio: 4.498396e-02	ci left: 2.673985e-02	ci right 2.797403e-02	k: 7385	n:270000
Cons ci ratio: 1.022076e-01	ci left: 5.141474e-03	ci right 5.698853e-03	k: 1462	n:270000
KS ci ratio: 5.718002e-03	ci left: 6.333068e-01	ci right 6.369421e-01	k: 171484	n:270000
ABCB11   270000 perm   114 sec   (2376 perm/sec)   p_kst 6.351259e-01   p_cons 5.414815e-03   p_joint 2.735185e-02

Joint ci ratio: 4.367914e-02	ci left: 2.734964e-02	ci right 2.857444e-02	k: 7828	n:280000
Cons ci ratio: 1.004720e-01	ci left: 5.135376e-03	ci right 5.682081e-03	k: 1513	n:280000
KS ci ratio: 5.617834e-03	ci left: 6.331028e-01	ci right 6.366730e-01	k: 177769	n:280000
ABCB11   280000 perm   119 sec   (2353 perm/sec)   p_kst 6.348893e-01   p_cons 5.403571e-03   p_joint 2.795714e-02

Joint ci ratio: 4.260589e-02	ci left: 2.775746e-02	ci right 2.896923e-02	k: 8224	n:290000
Cons ci ratio: 9.891725e-02	ci left: 5.119682e-03	ci right 5.655793e-03	k: 1561	n:290000
KS ci ratio: 5.519300e-03	ci left: 6.332033e-01	ci right 6.367112e-01	k: 184138	n:290000
ABCB11   290000 perm   124 sec   (2330 perm/sec)   p_kst 6.349586e-01   p_cons 5.382759e-03   p_joint 2.835862e-02

Outputting figure to mutsig2_images.part000000000001/ABCB11.15_4074_290000_0.63496_0.0053828_0.028359.png
                gene_name: ABCB11
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.0054 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.029 

Current progress: 15 percent done.
A2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
Cons ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
KS ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
A2M   10000 perm   2 sec   (4083 perm/sec)   p_kst 2.358000e-01   p_cons 4.818000e-01   p_joint 3.899000e-01

Outputting figure to mutsig2_images.part000000000001/A2M.14_4569_10000_0.2358_0.4818_0.3899.png
                gene_name: A2M
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 17 percent done.
ABCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
ABCA1   10000 perm   3 sec   (3169 perm/sec)   p_kst 7.639000e-01   p_cons 6.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA1.12_6982_10000_0.7639_0.6468_1.png
                gene_name: ABCA1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ABCA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
Cons ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
ABCA10   10000 perm   3 sec   (3892 perm/sec)   p_kst 4.535000e-01   p_cons 6.568000e-01   p_joint 8.928000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA10.12_4780_10000_0.4535_0.6568_0.8928.png
                gene_name: ABCA10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 19 percent done.
ABCA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
Cons ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
KS ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
ABCA9   10000 perm   3 sec   (3841 perm/sec)   p_kst 3.327000e-01   p_cons 7.715000e-01   p_joint 5.325000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA9.11_5027_10000_0.3327_0.7715_0.5325.png
                gene_name: ABCA9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 21 percent done.
ABCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
Cons ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
KS ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
ABCC5   10000 perm   2 sec   (4003 perm/sec)   p_kst 3.159000e-01   p_cons 3.294000e-01   p_joint 3.919000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC5.11_4470_10000_0.3159_0.3294_0.3919.png
                gene_name: ABCC5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 22 percent done.
ABCC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
ABCC8   10000 perm   3 sec   (3695 perm/sec)   p_kst 5.530000e-02   p_cons 9.090000e-02   p_joint 3.420000e-02

Joint ci ratio: 2.242329e-01	ci left: 1.336119e-02	ci right 1.678192e-02	k: 300	n:20000
Cons ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
KS ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
ABCC8   20000 perm   6 sec   (3386 perm/sec)   p_kst 5.475000e-02   p_cons 8.130000e-02   p_joint 1.500000e-02

Joint ci ratio: 1.618985e-01	ci left: 1.761317e-02	ci right 2.074760e-02	k: 574	n:30000
Cons ci ratio: 7.697506e-02	ci left: 7.649576e-02	ci right 8.265261e-02	k: 2386	n:30000
KS ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
ABCC8   30000 perm   9 sec   (3254 perm/sec)   p_kst 5.536667e-02   p_cons 7.953333e-02   p_joint 1.913333e-02

Joint ci ratio: 1.068962e-01	ci left: 3.078376e-02	ci right 3.428453e-02	k: 1300	n:40000
Cons ci ratio: 6.663605e-02	ci left: 7.696554e-02	ci right 8.229568e-02	k: 3184	n:40000
KS ci ratio: 8.091269e-02	ci left: 5.317804e-02	ci right 5.768678e-02	k: 2216	n:40000
ABCC8   40000 perm   13 sec   (3180 perm/sec)   p_kst 5.540000e-02   p_cons 7.960000e-02   p_joint 3.250000e-02

Joint ci ratio: 9.194178e-02	ci left: 3.346484e-02	ci right 3.670943e-02	k: 1753	n:50000
Cons ci ratio: 5.978292e-02	ci left: 7.680797e-02	ci right 8.156102e-02	k: 3958	n:50000
KS ci ratio: 7.198987e-02	ci left: 5.396119e-02	ci right 5.801056e-02	k: 2798	n:50000
ABCC8   50000 perm   16 sec   (3116 perm/sec)   p_kst 5.596000e-02   p_cons 7.916000e-02   p_joint 3.506000e-02

Outputting figure to mutsig2_images.part000000000001/ABCC8.11_4902_50000_0.05596_0.07916_0.03506.png
                gene_name: ABCC8
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.037 

Current progress: 24 percent done.
ABCA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
Cons ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
KS ci ratio: 1.524259e-02	ci left: 8.619232e-01	ci right 8.752613e-01	k: 8687	n:10000
ABCA6   10000 perm   3 sec   (3612 perm/sec)   p_kst 8.687000e-01   p_cons 2.077000e-01   p_joint 7.443000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA6.10_5006_10000_0.8687_0.2077_0.7443.png
                gene_name: ABCA6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 25 percent done.
ABCG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
Cons ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
KS ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
ABCG5   10000 perm   2 sec   (4485 perm/sec)   p_kst 7.375000e-01   p_cons 2.487000e-01   p_joint 6.069000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG5.10_2008_10000_0.7375_0.2487_0.6069.png
                gene_name: ABCG5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 26 percent done.
ABCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
Cons ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
ABCD2   10000 perm   2 sec   (4813 perm/sec)   p_kst 5.811000e-01   p_cons 4.064000e-01   p_joint 7.034000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD2.9_2263_10000_0.5811_0.4064_0.7034.png
                gene_name: ABCD2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 28 percent done.
A2ML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
A2ML1   10000 perm   3 sec   (3937 perm/sec)   p_kst 1.224000e-01   p_cons 6.164000e-01   p_joint 2.779000e-01

Joint ci ratio: 5.156127e-02	ci left: 2.183859e-01	ci right 2.299944e-01	k: 4483	n:20000
Cons ci ratio: 2.254379e-02	ci left: 5.950264e-01	ci right 6.086440e-01	k: 12037	n:20000
KS ci ratio: 7.691171e-02	ci left: 1.105115e-01	ci right 1.194007e-01	k: 2298	n:20000
A2ML1   20000 perm   6 sec   (3585 perm/sec)   p_kst 1.149000e-01   p_cons 6.018500e-01   p_joint 2.241500e-01

Outputting figure to mutsig2_images.part000000000001/A2ML1.8_4505_20000_0.1149_0.60185_0.22415.png
                gene_name: A2ML1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
AASDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
Cons ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
AASDH   10000 perm   2 sec   (4308 perm/sec)   p_kst 6.865000e-01   p_cons 3.148000e-01   p_joint 7.426000e-01

Outputting figure to mutsig2_images.part000000000001/AASDH.8_3353_10000_0.6865_0.3148_0.7426.png
                gene_name: AASDH
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 31 percent done.
ABCB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
ABCB10   10000 perm   2 sec   (4475 perm/sec)   p_kst 1.954000e-01   p_cons 2.188000e-01   p_joint 2.501000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB10.8_2269_10000_0.1954_0.2188_0.2501.png
                gene_name: ABCB10
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 32 percent done.
ABCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
ABCC4   10000 perm   3 sec   (3897 perm/sec)   p_kst 4.307000e-01   p_cons 6.310000e-02   p_joint 1.589000e-01

Joint ci ratio: 6.422856e-02	ci left: 1.519339e-01	ci right 1.620661e-01	k: 3139	n:20000
Cons ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
KS ci ratio: 3.098103e-02	ci left: 4.376467e-01	ci right 4.514694e-01	k: 8891	n:20000
ABCC4   20000 perm   6 sec   (3571 perm/sec)   p_kst 4.445500e-01   p_cons 5.945000e-02   p_joint 1.569500e-01

Joint ci ratio: 5.584549e-02	ci left: 1.371130e-01	ci right 1.450233e-01	k: 4231	n:30000
Cons ci ratio: 9.008614e-02	ci left: 5.668609e-02	ci right 6.206630e-02	k: 1780	n:30000
KS ci ratio: 2.522249e-02	ci left: 4.403640e-01	ci right 4.516465e-01	k: 13380	n:30000
ABCC4   30000 perm   9 sec   (3442 perm/sec)   p_kst 4.460000e-01   p_cons 5.933333e-02   p_joint 1.410333e-01

Outputting figure to mutsig2_images.part000000000001/ABCC4.8_4151_30000_0.446_0.059333_0.14103.png
                gene_name: ABCC4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
A1CF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
Cons ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
A1CF   10000 perm   2 sec   (5042 perm/sec)   p_kst 3.153000e-01   p_cons 2.831000e-01   p_joint 3.742000e-01

Outputting figure to mutsig2_images.part000000000001/A1CF.7_1956_10000_0.3153_0.2831_0.3742.png
                gene_name: A1CF
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 35 percent done.
A2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
Cons ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
KS ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
A2BP1   10000 perm   2 sec   (5324 perm/sec)   p_kst 7.928000e-01   p_cons 1.925000e-01   p_joint 4.951000e-01

Outputting figure to mutsig2_images.part000000000001/A2BP1.7_1441_10000_0.7928_0.1925_0.4951.png
                gene_name: A2BP1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
AAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
Cons ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
KS ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
AAK1   10000 perm   2 sec   (4665 perm/sec)   p_kst 7.201000e-01   p_cons 1.346000e-01   p_joint 3.449000e-01

Outputting figure to mutsig2_images.part000000000001/AAK1.7_2970_10000_0.7201_0.1346_0.3449.png
                gene_name: AAK1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 38 percent done.
AASS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
AASS   10000 perm   2 sec   (4440 perm/sec)   p_kst 1.570000e-01   p_cons 2.829000e-01   p_joint 1.788000e-01

Outputting figure to mutsig2_images.part000000000001/AASS.7_2873_10000_0.157_0.2829_0.1788.png
                gene_name: AASS
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
ABCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
ABCA5   10000 perm   3 sec   (3805 perm/sec)   p_kst 4.049000e-01   p_cons 9.296000e-01   p_joint 6.592000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA5.7_5081_10000_0.4049_0.9296_0.6592.png
                gene_name: ABCA5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 40 percent done.
ABCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
Cons ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
KS ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
ABCC3   10000 perm   3 sec   (3998 perm/sec)   p_kst 5.363000e-01   p_cons 5.728000e-01   p_joint 6.790000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC3.7_4792_10000_0.5363_0.5728_0.679.png
                gene_name: ABCC3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
AACS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
Cons ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
KS ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
AACS   10000 perm   2 sec   (5070 perm/sec)   p_kst 6.374000e-01   p_cons 4.710000e-01   p_joint 7.314000e-01

Outputting figure to mutsig2_images.part000000000001/AACS.6_2091_10000_0.6374_0.471_0.7314.png
                gene_name: AACS
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 43 percent done.
ABCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
KS ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
ABCA2   10000 perm   3 sec   (3382 perm/sec)   p_kst 1.852000e-01   p_cons 4.669000e-01   p_joint 2.830000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA2.6_7668_10000_0.1852_0.4669_0.283.png
                gene_name: ABCA2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 44 percent done.
ABCA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
ABCA3   10000 perm   3 sec   (3808 perm/sec)   p_kst 9.481000e-01   p_cons 4.908000e-01   p_joint 7.616000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA3.6_5235_10000_0.9481_0.4908_0.7616.png
                gene_name: ABCA3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 46 percent done.
ABCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
ABCA7   10000 perm   3 sec   (3452 perm/sec)   p_kst 4.436000e-01   p_cons 2.520000e-02   p_joint 7.440000e-02

Joint ci ratio: 9.246592e-02	ci left: 7.862504e-02	ci right 8.629687e-02	k: 1648	n:20000
Cons ci ratio: 1.745358e-01	ci left: 2.244966e-02	ci right 2.679005e-02	k: 491	n:20000
KS ci ratio: 3.106585e-02	ci left: 4.362990e-01	ci right 4.501175e-01	k: 8864	n:20000
ABCA7   20000 perm   6 sec   (3217 perm/sec)   p_kst 4.432000e-01   p_cons 2.455000e-02   p_joint 8.240000e-02

Joint ci ratio: 7.162986e-02	ci left: 8.750616e-02	ci right 9.404001e-02	k: 2722	n:30000
Cons ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
KS ci ratio: 2.530602e-02	ci left: 4.387328e-01	ci right 4.500113e-01	k: 13331	n:30000
ABCA7   30000 perm   10 sec   (3111 perm/sec)   p_kst 4.443667e-01   p_cons 2.700000e-02   p_joint 9.073333e-02

Joint ci ratio: 5.749077e-02	ci left: 1.011235e-01	ci right 1.071341e-01	k: 4164	n:40000
Cons ci ratio: 1.169378e-01	ci left: 2.572495e-02	ci right 2.894417e-02	k: 1092	n:40000
KS ci ratio: 2.192448e-02	ci left: 4.392974e-01	ci right 4.490607e-01	k: 17767	n:40000
ABCA7   40000 perm   13 sec   (3037 perm/sec)   p_kst 4.441750e-01   p_cons 2.730000e-02   p_joint 1.041000e-01

Joint ci ratio: 4.946680e-02	ci left: 1.088131e-01	ci right 1.143521e-01	k: 5578	n:50000
Cons ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
KS ci ratio: 1.962015e-02	ci left: 4.395584e-01	ci right 4.482881e-01	k: 22196	n:50000
ABCA7   50000 perm   17 sec   (2984 perm/sec)   p_kst 4.439200e-01   p_cons 2.708000e-02   p_joint 1.115600e-01

Joint ci ratio: 4.921248e-02	ci left: 9.327497e-02	ci right 9.799756e-02	k: 5737	n:60000
Cons ci ratio: 9.603816e-02	ci left: 2.571767e-02	ci right 2.832835e-02	k: 1620	n:60000
KS ci ratio: 1.797876e-02	ci left: 4.380708e-01	ci right 4.460349e-01	k: 26523	n:60000
ABCA7   60000 perm   20 sec   (2935 perm/sec)   p_kst 4.420500e-01   p_cons 2.700000e-02   p_joint 9.561667e-02

Outputting figure to mutsig2_images.part000000000001/ABCA7.6_6625_60000_0.44205_0.027_0.095617.png
                gene_name: ABCA7
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 47 percent done.
ABCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
Cons ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
KS ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
ABCC1   10000 perm   2 sec   (4064 perm/sec)   p_kst 3.702000e-01   p_cons 2.429000e-01   p_joint 2.804000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC1.6_4720_10000_0.3702_0.2429_0.2804.png
                gene_name: ABCC1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 49 percent done.
ABCG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
Cons ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
KS ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
ABCG4   10000 perm   2 sec   (4973 perm/sec)   p_kst 9.364000e-01   p_cons 1.743000e-01   p_joint 5.546000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG4.6_1997_10000_0.9364_0.1743_0.5546.png
                gene_name: ABCG4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 50 percent done.
ABCG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
Cons ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
ABCG8   10000 perm   2 sec   (4780 perm/sec)   p_kst 3.305000e-01   p_cons 3.483000e-01   p_joint 3.544000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG8.6_2074_10000_0.3305_0.3483_0.3544.png
                gene_name: ABCG8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 51 percent done.
AADACL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
Cons ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KS ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
AADACL3   10000 perm   2 sec   (5666 perm/sec)   p_kst 5.274000e-01   p_cons 4.777000e-01   p_joint 5.821000e-01

Outputting figure to mutsig2_images.part000000000001/AADACL3.5_1073_10000_0.5274_0.4777_0.5821.png
                gene_name: AADACL3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 53 percent done.
ABCB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
ABCB8   10000 perm   2 sec   (5058 perm/sec)   p_kst 3.113000e-01   p_cons 1.610000e-02   p_joint 3.730000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
KS ci ratio: 4.054138e-02	ci left: 3.120449e-01	ci right 3.250079e-01	k: 6370	n:20000
ABCB8   20000 perm   4 sec   (4457 perm/sec)   p_kst 3.185000e-01   p_cons 1.570000e-02   p_joint 3.900000e-02

Joint ci ratio: 9.637173e-02	ci left: 4.974238e-02	ci right 5.481144e-02	k: 1567	n:30000
Cons ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
KS ci ratio: 3.307018e-02	ci left: 3.136605e-01	ci right 3.242412e-01	k: 9568	n:30000
ABCB8   30000 perm   7 sec   (4255 perm/sec)   p_kst 3.189333e-01   p_cons 1.520000e-02   p_joint 5.223333e-02

Joint ci ratio: 9.349108e-02	ci left: 4.012839e-02	ci right 4.408843e-02	k: 1683	n:40000
Cons ci ratio: 1.714496e-01	ci left: 1.179319e-02	ci right 1.402836e-02	k: 515	n:40000
KS ci ratio: 2.847835e-02	ci left: 3.168239e-01	ci right 3.260020e-01	k: 12856	n:40000
ABCB8   40000 perm   10 sec   (4149 perm/sec)   p_kst 3.214000e-01   p_cons 1.287500e-02   p_joint 4.207500e-02

Joint ci ratio: 8.288398e-02	ci left: 4.104245e-02	ci right 4.461087e-02	k: 2140	n:50000
Cons ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
KS ci ratio: 2.541267e-02	ci left: 3.183235e-01	ci right 3.265371e-01	k: 16121	n:50000
ABCB8   50000 perm   12 sec   (4057 perm/sec)   p_kst 3.224200e-01   p_cons 1.260000e-02   p_joint 4.280000e-02

Joint ci ratio: 7.108841e-02	ci left: 4.651610e-02	ci right 4.996110e-02	k: 2893	n:60000
Cons ci ratio: 1.417618e-01	ci left: 1.169064e-02	ci right 1.349029e-02	k: 754	n:60000
KS ci ratio: 2.352755e-02	ci left: 3.125797e-01	ci right 3.200381e-01	k: 18978	n:60000
ABCB8   60000 perm   15 sec   (3969 perm/sec)   p_kst 3.163000e-01   p_cons 1.256667e-02   p_joint 4.821667e-02

Joint ci ratio: 6.287035e-02	ci left: 5.095772e-02	ci right 5.427949e-02	k: 3682	n:70000
Cons ci ratio: 1.307086e-01	ci left: 1.185594e-02	ci right 1.352768e-02	k: 887	n:70000
KS ci ratio: 2.175365e-02	ci left: 3.134253e-01	ci right 3.203327e-01	k: 22181	n:70000
ABCB8   70000 perm   18 sec   (3889 perm/sec)   p_kst 3.168714e-01   p_cons 1.267143e-02   p_joint 5.260000e-02

Joint ci ratio: 6.238130e-02	ci left: 4.556827e-02	ci right 4.851469e-02	k: 3762	n:80000
Cons ci ratio: 1.223803e-01	ci left: 1.188703e-02	ci right 1.344861e-02	k: 1012	n:80000
KS ci ratio: 2.037624e-02	ci left: 3.130655e-01	ci right 3.195228e-01	k: 25303	n:80000
ABCB8   80000 perm   21 sec   (3814 perm/sec)   p_kst 3.162875e-01   p_cons 1.265000e-02   p_joint 4.702500e-02

Joint ci ratio: 5.743454e-02	ci left: 4.779595e-02	ci right 5.063319e-02	k: 4428	n:90000
Cons ci ratio: 1.160340e-01	ci left: 1.179513e-02	ci right 1.325877e-02	k: 1126	n:90000
KS ci ratio: 1.924699e-02	ci left: 3.124422e-01	ci right 3.185253e-01	k: 28393	n:90000
ABCB8   90000 perm   24 sec   (3747 perm/sec)   p_kst 3.154778e-01   p_cons 1.251111e-02   p_joint 4.920000e-02

Joint ci ratio: 5.519941e-02	ci left: 4.668321e-02	ci right 4.934308e-02	k: 4800	n:100000
Cons ci ratio: 1.104025e-01	ci left: 1.176220e-02	ci right 1.314630e-02	k: 1244	n:100000
KS ci ratio: 1.820402e-02	ci left: 3.139069e-01	ci right 3.196837e-01	k: 31679	n:100000
ABCB8   100000 perm   27 sec   (3686 perm/sec)   p_kst 3.167900e-01   p_cons 1.244000e-02   p_joint 4.800000e-02

Joint ci ratio: 5.269929e-02	ci left: 4.662743e-02	ci right 4.916011e-02	k: 5267	n:110000
Cons ci ratio: 1.052841e-01	ci left: 1.178979e-02	ci right 1.310883e-02	k: 1368	n:110000
KS ci ratio: 1.736487e-02	ci left: 3.138424e-01	ci right 3.193491e-01	k: 34825	n:110000
ABCB8   110000 perm   30 sec   (3628 perm/sec)   p_kst 3.165909e-01   p_cons 1.243636e-02   p_joint 4.788182e-02

Joint ci ratio: 4.791695e-02	ci left: 5.155782e-02	ci right 5.409717e-02	k: 6338	n:120000
Cons ci ratio: 1.009888e-01	ci left: 1.177339e-02	ci right 1.303367e-02	k: 1487	n:120000
KS ci ratio: 1.663425e-02	ci left: 3.137357e-01	ci right 3.190065e-01	k: 37964	n:120000
ABCB8   120000 perm   34 sec   (3571 perm/sec)   p_kst 3.163667e-01   p_cons 1.239167e-02   p_joint 5.281667e-02

Joint ci ratio: 4.619805e-02	ci left: 5.126331e-02	ci right 5.369516e-02	k: 6821	n:130000
Cons ci ratio: 9.702697e-02	ci left: 1.179798e-02	ci right 1.300853e-02	k: 1611	n:130000
KS ci ratio: 1.599127e-02	ci left: 3.135805e-01	ci right 3.186431e-01	k: 41094	n:130000
ABCB8   130000 perm   37 sec   (3517 perm/sec)   p_kst 3.161077e-01   p_cons 1.239231e-02   p_joint 5.246923e-02

Outputting figure to mutsig2_images.part000000000001/ABCB8.5_2221_130000_0.31611_0.012392_0.052469.png
                gene_name: ABCB8
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 54 percent done.
ABCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
Cons ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
ABCC2   10000 perm   2 sec   (4413 perm/sec)   p_kst 8.300000e-01   p_cons 3.571000e-01   p_joint 7.627000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC2.5_4766_10000_0.83_0.3571_0.7627.png
                gene_name: ABCC2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
ABCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.709732e-02	ci left: 8.328694e-01	ci right 8.473319e-01	k: 8402	n:10000
Cons ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
ABCD3   10000 perm   2 sec   (5404 perm/sec)   p_kst 9.400000e-01   p_cons 3.961000e-01   p_joint 8.402000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD3.5_2103_10000_0.94_0.3961_0.8402.png
                gene_name: ABCD3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 57 percent done.
ABCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
Cons ci ratio: 1.402963e-02	ci left: 8.801201e-01	ci right 8.926539e-01	k: 8865	n:10000
KS ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
ABCG2   10000 perm   2 sec   (5431 perm/sec)   p_kst 3.723000e-01   p_cons 8.865000e-01   p_joint 5.646000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG2.5_2028_10000_0.3723_0.8865_0.5646.png
                gene_name: ABCG2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 58 percent done.
AADACL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
Cons ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
KS ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
AADACL2   10000 perm   2 sec   (5956 perm/sec)   p_kst 1.281000e-01   p_cons 7.445000e-01   p_joint 3.021000e-01

Joint ci ratio: 4.774858e-02	ci left: 2.459943e-01	ci right 2.580778e-01	k: 5040	n:20000
Cons ci ratio: 1.659008e-02	ci left: 7.300837e-01	ci right 7.423475e-01	k: 14725	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
AADACL2   20000 perm   4 sec   (5171 perm/sec)   p_kst 1.264000e-01   p_cons 7.362500e-01   p_joint 2.520000e-01

Outputting figure to mutsig2_images.part000000000001/AADACL2.4_1226_20000_0.1264_0.73625_0.252.png
                gene_name: AADACL2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 60 percent done.
AAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
Cons ci ratio: 3.262681e-02	ci left: 5.809875e-01	ci right 6.003596e-01	k: 5907	n:10000
KS ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
AAMP   10000 perm   2 sec   (5699 perm/sec)   p_kst 1.872000e-01   p_cons 5.907000e-01   p_joint 2.849000e-01

Outputting figure to mutsig2_images.part000000000001/AAMP.4_1349_10000_0.1872_0.5907_0.2849.png
                gene_name: AAMP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
AARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
Cons ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
KS ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
AARS2   10000 perm   2 sec   (5001 perm/sec)   p_kst 1.685000e-01   p_cons 8.630000e-01   p_joint 3.840000e-01

Outputting figure to mutsig2_images.part000000000001/AARS2.4_3046_10000_0.1685_0.863_0.384.png
                gene_name: AARS2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
ABAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
Cons ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
ABAT   10000 perm   2 sec   (5663 perm/sec)   p_kst 4.320000e-02   p_cons 5.608000e-01   p_joint 5.880000e-02

Joint ci ratio: 9.533036e-02	ci left: 7.422213e-02	ci right 8.170111e-02	k: 1558	n:20000
Cons ci ratio: 2.416213e-02	ci left: 5.613007e-01	ci right 5.750794e-01	k: 11364	n:20000
KS ci ratio: 1.285145e-01	ci left: 4.158670e-02	ci right 4.734668e-02	k: 888	n:20000
ABAT   20000 perm   4 sec   (4891 perm/sec)   p_kst 4.440000e-02   p_cons 5.682000e-01   p_joint 7.790000e-02

Joint ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
Cons ci ratio: 1.981326e-02	ci left: 5.604689e-01	ci right 5.717183e-01	k: 16983	n:30000
KS ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
ABAT   30000 perm   6 sec   (4685 perm/sec)   p_kst 4.493333e-02   p_cons 5.661000e-01   p_joint 5.936667e-02

Joint ci ratio: 7.536449e-02	ci left: 6.095755e-02	ci right 6.575608e-02	k: 2533	n:40000
Cons ci ratio: 1.712842e-02	ci left: 5.621020e-01	ci right 5.718382e-01	k: 22679	n:40000
KS ci ratio: 8.946190e-02	ci left: 4.374741e-02	ci right 4.786886e-02	k: 1831	n:40000
ABAT   40000 perm   9 sec   (4546 perm/sec)   p_kst 4.577500e-02   p_cons 5.669750e-01   p_joint 6.332500e-02

Outputting figure to mutsig2_images.part000000000001/ABAT.4_1563_40000_0.045775_0.56698_0.063325.png
                gene_name: ABAT
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 64 percent done.
ABCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499718e-02	ci left: 5.465975e-01	ci right 5.661697e-01	k: 5564	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
ABCE1   10000 perm   2 sec   (5592 perm/sec)   p_kst 4.087000e-01   p_cons 7.596000e-01   p_joint 5.564000e-01

Outputting figure to mutsig2_images.part000000000001/ABCE1.4_1868_10000_0.4087_0.7596_0.5564.png
                gene_name: ABCE1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 65 percent done.
ABCF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
Cons ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
KS ci ratio: 1.872082e-02	ci left: 8.065373e-01	ci right 8.218792e-01	k: 8143	n:10000
ABCF3   10000 perm   2 sec   (5693 perm/sec)   p_kst 8.143000e-01   p_cons 1.960000e-02   p_joint 1.152000e-01

Joint ci ratio: 8.280953e-02	ci left: 9.656264e-02	ci right 1.049538e-01	k: 2014	n:20000
Cons ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
KS ci ratio: 1.234013e-02	ci left: 8.293772e-01	ci right 8.397253e-01	k: 16692	n:20000
ABCF3   20000 perm   4 sec   (5048 perm/sec)   p_kst 8.346000e-01   p_cons 1.985000e-02   p_joint 1.007000e-01

Joint ci ratio: 7.334621e-02	ci left: 8.373590e-02	ci right 9.014436e-02	k: 2607	n:30000
Cons ci ratio: 1.679557e-01	ci left: 1.633394e-02	ci right 1.936046e-02	k: 534	n:30000
KS ci ratio: 1.007187e-02	ci left: 8.304477e-01	ci right 8.388874e-01	k: 25041	n:30000
ABCF3   30000 perm   6 sec   (4811 perm/sec)   p_kst 8.347000e-01   p_cons 1.780000e-02   p_joint 8.690000e-02

Joint ci ratio: 6.696787e-02	ci left: 7.625166e-02	ci right 8.155966e-02	k: 3155	n:40000
Cons ci ratio: 1.468582e-01	ci left: 1.621352e-02	ci right 1.880720e-02	k: 699	n:40000
KS ci ratio: 8.716896e-03	ci left: 8.311996e-01	ci right 8.385017e-01	k: 33395	n:40000
ABCF3   40000 perm   9 sec   (4644 perm/sec)   p_kst 8.348750e-01   p_cons 1.747500e-02   p_joint 7.887500e-02

Joint ci ratio: 4.905700e-02	ci left: 1.104551e-01	ci right 1.160298e-01	k: 5661	n:50000
Cons ci ratio: 1.297781e-01	ci left: 1.675589e-02	ci right 1.910056e-02	k: 895	n:50000
KS ci ratio: 7.846725e-03	ci left: 8.298023e-01	ci right 8.363590e-01	k: 41655	n:50000
ABCF3   50000 perm   11 sec   (4517 perm/sec)   p_kst 8.331000e-01   p_cons 1.790000e-02   p_joint 1.132200e-01

Joint ci ratio: 4.592010e-02	ci left: 1.058076e-01	ci right 1.107970e-01	k: 6497	n:60000
Cons ci ratio: 1.189335e-01	ci left: 1.672469e-02	ci right 1.885565e-02	k: 1066	n:60000
KS ci ratio: 7.157445e-03	ci left: 8.303101e-01	ci right 8.362909e-01	k: 49999	n:60000
ABCF3   60000 perm   14 sec   (4413 perm/sec)   p_kst 8.333167e-01   p_cons 1.776667e-02   p_joint 1.082833e-01

Joint ci ratio: 4.361877e-02	ci left: 1.011820e-01	ci right 1.057080e-01	k: 7240	n:70000
Cons ci ratio: 1.105110e-01	ci left: 1.668049e-02	ci right 1.864550e-02	k: 1235	n:70000
KS ci ratio: 6.648004e-03	ci left: 8.296265e-01	ci right 8.351745e-01	k: 58269	n:70000
ABCF3   70000 perm   16 sec   (4314 perm/sec)   p_kst 8.324143e-01   p_cons 1.764286e-02   p_joint 1.034286e-01

Joint ci ratio: 4.199005e-02	ci left: 9.617099e-02	ci right 1.003082e-01	k: 7858	n:80000
Cons ci ratio: 1.026573e-01	ci left: 1.698031e-02	ci right 1.882989e-02	k: 1431	n:80000
KS ci ratio: 6.224518e-03	ci left: 8.295419e-01	ci right 8.347340e-01	k: 66572	n:80000
ABCF3   80000 perm   19 sec   (4223 perm/sec)   p_kst 8.321500e-01   p_cons 1.788750e-02   p_joint 9.822500e-02

Joint ci ratio: 3.724348e-02	ci left: 1.075551e-01	ci right 1.116479e-01	k: 9863	n:90000
Cons ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
KS ci ratio: 5.900356e-03	ci left: 8.281667e-01	ci right 8.330787e-01	k: 74757	n:90000
ABCF3   90000 perm   22 sec   (4139 perm/sec)   p_kst 8.306333e-01   p_cons 1.821111e-02   p_joint 1.095889e-01

Outputting figure to mutsig2_images.part000000000001/ABCF3.4_2214_90000_0.83063_0.018211_0.10959.png
                gene_name: ABCF3
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 67 percent done.
AADAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
AADAC   10000 perm   2 sec   (6219 perm/sec)   p_kst 6.405000e-01   p_cons 4.600000e-03   p_joint 3.480000e-02

Joint ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
Cons ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
KS ci ratio: 2.086024e-02	ci left: 6.316965e-01	ci right 6.450633e-01	k: 12768	n:20000
AADAC   20000 perm   4 sec   (5534 perm/sec)   p_kst 6.384000e-01   p_cons 4.450000e-03   p_joint 5.550000e-02

Joint ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
Cons ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
KS ci ratio: 1.696991e-02	ci left: 6.346387e-01	ci right 6.455342e-01	k: 19203	n:30000
AADAC   30000 perm   6 sec   (5250 perm/sec)   p_kst 6.401000e-01   p_cons 4.300000e-03   p_joint 4.933333e-02

Joint ci ratio: 8.808497e-02	ci left: 4.509327e-02	ci right 4.927278e-02	k: 1886	n:40000
Cons ci ratio: 3.272163e-01	ci left: 2.990936e-03	ci right 4.182924e-03	k: 142	n:40000
KS ci ratio: 1.475874e-02	ci left: 6.334184e-01	ci right 6.428615e-01	k: 25526	n:40000
AADAC   40000 perm   8 sec   (5054 perm/sec)   p_kst 6.381500e-01   p_cons 3.550000e-03   p_joint 4.715000e-02

Joint ci ratio: 1.085470e-01	ci left: 2.403851e-02	ci right 2.681696e-02	k: 1270	n:50000
Cons ci ratio: 2.992539e-01	ci left: 2.908789e-03	ci right 3.950180e-03	k: 170	n:50000
KS ci ratio: 1.326105e-02	ci left: 6.318049e-01	ci right 6.402593e-01	k: 31802	n:50000
AADAC   50000 perm   10 sec   (4904 perm/sec)   p_kst 6.360400e-01   p_cons 3.400000e-03   p_joint 2.540000e-02

Joint ci ratio: 6.252441e-02	ci left: 5.955774e-02	ci right 6.341814e-02	k: 3688	n:60000
Cons ci ratio: 2.746620e-01	ci left: 2.919007e-03	ci right 3.863370e-03	k: 202	n:60000
KS ci ratio: 1.213374e-02	ci left: 6.310996e-01	ci right 6.388206e-01	k: 38098	n:60000
AADAC   60000 perm   13 sec   (4775 perm/sec)   p_kst 6.349667e-01   p_cons 3.366667e-03   p_joint 6.146667e-02

Joint ci ratio: 5.332844e-02	ci left: 6.974301e-02	ci right 7.357830e-02	k: 5015	n:70000
Cons ci ratio: 2.505128e-01	ci left: 3.049267e-03	ci right 3.935534e-03	k: 243	n:70000
KS ci ratio: 1.120036e-02	ci left: 6.327665e-01	ci right 6.399079e-01	k: 44544	n:70000
AADAC   70000 perm   15 sec   (4658 perm/sec)   p_kst 6.363429e-01   p_cons 3.471429e-03   p_joint 7.164286e-02

Joint ci ratio: 4.730488e-02	ci left: 7.717697e-02	ci right 8.092862e-02	k: 6323	n:80000
Cons ci ratio: 2.090727e-01	ci left: 3.917612e-03	ci right 4.843897e-03	k: 349	n:80000
KS ci ratio: 1.048758e-02	ci left: 6.325295e-01	ci right 6.392106e-01	k: 50870	n:80000
AADAC   80000 perm   18 sec   (4557 perm/sec)   p_kst 6.358750e-01   p_cons 4.362500e-03   p_joint 7.903750e-02

Joint ci ratio: 4.468651e-02	ci left: 7.700383e-02	ci right 8.053449e-02	k: 7088	n:90000
Cons ci ratio: 1.988348e-01	ci left: 3.872438e-03	ci right 4.737769e-03	k: 386	n:90000
KS ci ratio: 9.883948e-03	ci left: 6.329023e-01	ci right 6.392000e-01	k: 57245	n:90000
AADAC   90000 perm   20 sec   (4459 perm/sec)   p_kst 6.360556e-01   p_cons 4.288889e-03   p_joint 7.875556e-02

Joint ci ratio: 4.684914e-02	ci left: 6.389508e-02	ci right 6.697018e-02	k: 6542	n:100000
Cons ci ratio: 1.871079e-01	ci left: 3.961072e-03	ci right 4.788081e-03	k: 436	n:100000
KS ci ratio: 9.388203e-03	ci left: 6.324981e-01	ci right 6.384741e-01	k: 63549	n:100000
AADAC   100000 perm   23 sec   (4367 perm/sec)   p_kst 6.354900e-01   p_cons 4.360000e-03   p_joint 6.542000e-02

Joint ci ratio: 4.126216e-02	ci left: 7.426054e-02	ci right 7.739823e-02	k: 8340	n:110000
Cons ci ratio: 1.756151e-01	ci left: 4.113037e-03	ci right 4.913433e-03	k: 495	n:110000
KS ci ratio: 8.956736e-03	ci left: 6.323563e-01	ci right 6.380547e-01	k: 69873	n:110000
AADAC   110000 perm   26 sec   (4280 perm/sec)   p_kst 6.352091e-01   p_cons 4.500000e-03   p_joint 7.581818e-02

Joint ci ratio: 4.586011e-02	ci left: 5.607399e-02	ci right 5.871412e-02	k: 6886	n:120000
Cons ci ratio: 1.683093e-01	ci left: 4.121175e-03	ci right 4.886408e-03	k: 539	n:120000
KS ci ratio: 8.572358e-03	ci left: 6.326443e-01	ci right 6.380992e-01	k: 76245	n:120000
AADAC   120000 perm   29 sec   (4196 perm/sec)   p_kst 6.353750e-01   p_cons 4.491667e-03   p_joint 5.738333e-02

Joint ci ratio: 4.396391e-02	ci left: 5.636237e-02	ci right 5.890356e-02	k: 7491	n:130000
Cons ci ratio: 1.603355e-01	ci left: 4.209863e-03	ci right 4.950964e-03	k: 594	n:130000
KS ci ratio: 8.245462e-03	ci left: 6.322221e-01	ci right 6.374642e-01	k: 82530	n:130000
AADAC   130000 perm   32 sec   (4119 perm/sec)   p_kst 6.348462e-01   p_cons 4.569231e-03   p_joint 5.762308e-02

Joint ci ratio: 4.585295e-02	ci left: 4.847552e-02	ci right 5.075746e-02	k: 6945	n:140000
Cons ci ratio: 1.544753e-01	ci left: 4.224793e-03	ci right 4.938822e-03	k: 640	n:140000
KS ci ratio: 7.948892e-03	ci left: 6.321213e-01	ci right 6.371731e-01	k: 88851	n:140000
AADAC   140000 perm   35 sec   (4044 perm/sec)   p_kst 6.346500e-01   p_cons 4.571429e-03   p_joint 4.960714e-02

Joint ci ratio: 4.153480e-02	ci left: 5.488792e-02	ci right 5.722261e-02	k: 8407	n:150000
Cons ci ratio: 1.488877e-01	ci left: 4.257416e-03	ci right 4.948615e-03	k: 689	n:150000
KS ci ratio: 7.684828e-03	ci left: 6.318768e-01	ci right 6.367580e-01	k: 95148	n:150000
AADAC   150000 perm   38 sec   (3972 perm/sec)   p_kst 6.343200e-01   p_cons 4.593333e-03   p_joint 5.604667e-02

Joint ci ratio: 4.077651e-02	ci left: 5.349170e-02	ci right 5.572447e-02	k: 8736	n:160000
Cons ci ratio: 1.444560e-01	ci left: 4.250214e-03	ci right 4.917933e-03	k: 732	n:160000
KS ci ratio: 7.444235e-03	ci left: 6.317405e-01	ci right 6.364671e-01	k: 101457	n:160000
AADAC   160000 perm   41 sec   (3901 perm/sec)   p_kst 6.341062e-01   p_cons 4.575000e-03   p_joint 5.460000e-02

Joint ci ratio: 4.077199e-02	ci left: 5.051817e-02	ci right 5.262656e-02	k: 8766	n:170000
Cons ci ratio: 1.388778e-01	ci left: 4.340650e-03	ci right 4.994066e-03	k: 792	n:170000
KS ci ratio: 7.225090e-03	ci left: 6.316107e-01	ci right 6.361965e-01	k: 107764	n:170000
AADAC   170000 perm   44 sec   (3836 perm/sec)   p_kst 6.339059e-01   p_cons 4.658824e-03   p_joint 5.156471e-02

Joint ci ratio: 4.032834e-02	ci left: 4.886558e-02	ci right 5.088228e-02	k: 8976	n:180000
Cons ci ratio: 1.345348e-01	ci left: 4.378518e-03	ci right 5.015373e-03	k: 844	n:180000
KS ci ratio: 7.018003e-03	ci left: 6.319088e-01	ci right 6.363647e-01	k: 114145	n:180000
AADAC   180000 perm   48 sec   (3774 perm/sec)   p_kst 6.341389e-01   p_cons 4.688889e-03   p_joint 4.986667e-02

Joint ci ratio: 3.959190e-02	ci left: 4.809096e-02	ci right 5.003862e-02	k: 9321	n:190000
Cons ci ratio: 1.309425e-01	ci left: 4.387225e-03	ci right 5.006983e-03	k: 891	n:190000
KS ci ratio: 6.830157e-03	ci left: 6.320138e-01	ci right 6.363505e-01	k: 120495	n:190000
AADAC   190000 perm   51 sec   (3714 perm/sec)   p_kst 6.341842e-01   p_cons 4.689474e-03   p_joint 4.905789e-02

Joint ci ratio: 3.521871e-02	ci left: 5.730181e-02	ci right 5.936101e-02	k: 11665	n:200000
Cons ci ratio: 1.272834e-01	ci left: 4.419472e-03	ci right 5.025021e-03	k: 943	n:200000
KS ci ratio: 6.647522e-03	ci left: 6.327455e-01	ci right 6.369706e-01	k: 126972	n:200000
AADAC   200000 perm   55 sec   (3655 perm/sec)   p_kst 6.348600e-01   p_cons 4.715000e-03   p_joint 5.832500e-02

Joint ci ratio: 3.478238e-02	ci left: 5.604049e-02	ci right 5.802890e-02	k: 11976	n:210000
Cons ci ratio: 1.249911e-01	ci left: 4.370421e-03	ci right 4.957666e-03	k: 978	n:210000
KS ci ratio: 6.487559e-03	ci left: 6.327794e-01	ci right 6.369026e-01	k: 133317	n:210000
AADAC   210000 perm   58 sec   (3593 perm/sec)   p_kst 6.348429e-01   p_cons 4.657143e-03   p_joint 5.702857e-02

Joint ci ratio: 3.505984e-02	ci left: 5.282475e-02	ci right 5.471430e-02	k: 11828	n:220000
Cons ci ratio: 1.219156e-01	ci left: 4.392023e-03	ci right 4.966602e-03	k: 1028	n:220000
KS ci ratio: 6.337682e-03	ci left: 6.328796e-01	ci right 6.369078e-01	k: 139677	n:220000
AADAC   220000 perm   62 sec   (3537 perm/sec)   p_kst 6.348955e-01   p_cons 4.672727e-03   p_joint 5.376364e-02

Joint ci ratio: 3.395204e-02	ci left: 5.385176e-02	ci right 5.571600e-02	k: 12599	n:230000
Cons ci ratio: 1.193905e-01	ci left: 4.386596e-03	ci right 4.947739e-03	k: 1072	n:230000
KS ci ratio: 6.201513e-03	ci left: 6.326891e-01	ci right 6.366292e-01	k: 145972	n:230000
AADAC   230000 perm   66 sec   (3484 perm/sec)   p_kst 6.346609e-01   p_cons 4.660870e-03   p_joint 5.477826e-02

Joint ci ratio: 3.428840e-02	ci left: 5.075962e-02	ci right 5.253456e-02	k: 12394	n:240000
Cons ci ratio: 1.167016e-01	ci left: 4.406005e-03	ci right 4.956062e-03	k: 1122	n:240000
KS ci ratio: 6.069774e-03	ci left: 6.328199e-01	ci right 6.366768e-01	k: 152340	n:240000
AADAC   240000 perm   70 sec   (3431 perm/sec)   p_kst 6.347500e-01   p_cons 4.675000e-03   p_joint 5.164167e-02

Joint ci ratio: 3.451956e-02	ci left: 4.820465e-02	ci right 4.990182e-02	k: 12262	n:250000
Cons ci ratio: 1.140889e-01	ci left: 4.431765e-03	ci right 4.971817e-03	k: 1174	n:250000
KS ci ratio: 5.944140e-03	ci left: 6.330933e-01	ci right 6.368716e-01	k: 158746	n:250000
AADAC   250000 perm   74 sec   (3381 perm/sec)   p_kst 6.349840e-01   p_cons 4.696000e-03   p_joint 4.904800e-02

Joint ci ratio: 3.971815e-02	ci left: 3.539385e-02	ci right 3.683190e-02	k: 9388	n:260000
Cons ci ratio: 1.120116e-01	ci left: 4.425757e-03	ci right 4.954608e-03	k: 1218	n:260000
KS ci ratio: 5.830975e-03	ci left: 6.329497e-01	ci right 6.366550e-01	k: 165049	n:260000
AADAC   260000 perm   78 sec   (3333 perm/sec)   p_kst 6.348038e-01   p_cons 4.684615e-03   p_joint 3.610769e-02

Joint ci ratio: 3.502608e-02	ci left: 4.355630e-02	ci right 4.511275e-02	k: 11969	n:270000
Cons ci ratio: 1.101753e-01	ci left: 4.409470e-03	ci right 4.927177e-03	k: 1259	n:270000
KS ci ratio: 5.723715e-03	ci left: 6.328434e-01	ci right 6.364796e-01	k: 171359	n:270000
AADAC   270000 perm   82 sec   (3285 perm/sec)   p_kst 6.346630e-01   p_cons 4.662963e-03   p_joint 4.432963e-02

Joint ci ratio: 3.700158e-02	ci left: 3.782574e-02	ci right 3.925526e-02	k: 10790	n:280000
Cons ci ratio: 1.084265e-01	ci left: 4.394413e-03	ci right 4.901639e-03	k: 1300	n:280000
KS ci ratio: 5.622725e-03	ci left: 6.326988e-01	ci right 6.362698e-01	k: 177656	n:280000
AADAC   280000 perm   86 sec   (3239 perm/sec)   p_kst 6.344857e-01   p_cons 4.642857e-03   p_joint 3.853571e-02

Joint ci ratio: 3.636038e-02	ci left: 3.783340e-02	ci right 3.923791e-02	k: 11174	n:290000
Cons ci ratio: 1.065591e-01	ci left: 4.397237e-03	ci right 4.895500e-03	k: 1346	n:290000
KS ci ratio: 5.525296e-03	ci left: 6.326994e-01	ci right 6.362083e-01	k: 183992	n:290000
AADAC   290000 perm   91 sec   (3194 perm/sec)   p_kst 6.344552e-01   p_cons 4.641379e-03   p_joint 3.853103e-02

Joint ci ratio: 3.308058e-02	ci left: 4.397320e-02	ci right 4.545561e-02	k: 13413	n:300000
Cons ci ratio: 1.044840e-01	ci left: 4.425916e-03	ci right 4.917062e-03	k: 1400	n:300000
KS ci ratio: 5.431825e-03	ci left: 6.327805e-01	ci right 6.362303e-01	k: 190352	n:300000
AADAC   300000 perm   95 sec   (3149 perm/sec)   p_kst 6.345067e-01   p_cons 4.666667e-03   p_joint 4.471000e-02

Joint ci ratio: 3.258960e-02	ci left: 4.386319e-02	ci right 4.531953e-02	k: 13822	n:310000
Cons ci ratio: 1.032048e-01	ci left: 4.393111e-03	ci right 4.874286e-03	k: 1435	n:310000
KS ci ratio: 5.343760e-03	ci left: 6.327858e-01	ci right 6.361795e-01	k: 196690	n:310000
AADAC   310000 perm   100 sec   (3107 perm/sec)   p_kst 6.344839e-01   p_cons 4.629032e-03   p_joint 4.458710e-02

Joint ci ratio: 3.298928e-02	ci left: 4.156182e-02	ci right 4.295899e-02	k: 13522	n:320000
Cons ci ratio: 1.014874e-01	ci left: 4.405033e-03	ci right 4.879006e-03	k: 1484	n:320000
KS ci ratio: 5.258993e-03	ci left: 6.328662e-01	ci right 6.362063e-01	k: 203052	n:320000
AADAC   320000 perm   104 sec   (3064 perm/sec)   p_kst 6.345375e-01   p_cons 4.637500e-03   p_joint 4.225625e-02

Joint ci ratio: 3.264553e-02	ci left: 4.117982e-02	ci right 4.254945e-02	k: 13814	n:330000
Cons ci ratio: 9.991843e-02	ci left: 4.410385e-03	ci right 4.877167e-03	k: 1531	n:330000
KS ci ratio: 5.178136e-03	ci left: 6.329422e-01	ci right 6.362312e-01	k: 209414	n:330000
AADAC   330000 perm   109 sec   (3022 perm/sec)   p_kst 6.345879e-01   p_cons 4.639394e-03   p_joint 4.186061e-02

Outputting figure to mutsig2_images.part000000000001/AADAC.3_1220_330000_0.63459_0.0046394_0.041861.png
                gene_name: AADAC
               theta_stop: 0.100 
                    nperm: 330000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.0046 
      ci_cons_bounds_left: 0.0044 
     ci_cons_bounds_right: 0.0049 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 68 percent done.
AADACL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
AADACL4   10000 perm   2 sec   (6063 perm/sec)   p_kst 4.735000e-01   p_cons 6.159000e-01   p_joint 7.535000e-01

Outputting figure to mutsig2_images.part000000000001/AADACL4.3_1240_10000_0.4735_0.6159_0.7535.png
                gene_name: AADACL4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 69 percent done.
AARSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
AARSD1   10000 perm   2 sec   (5758 perm/sec)   p_kst 5.985000e-01   p_cons 3.652000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000001/AARSD1.3_1872_10000_0.5985_0.3652_0.5897.png
                gene_name: AARSD1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 71 percent done.
ABCB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 1.190619e-02	ci left: 9.099797e-01	ci right 9.209768e-01	k: 9156	n:10000
KS ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
ABCB6   10000 perm   2 sec   (5533 perm/sec)   p_kst 1.728000e-01   p_cons 9.156000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB6.3_2605_10000_0.1728_0.9156_0.4565.png
                gene_name: ABCB6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 72 percent done.
ABCB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
Cons ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
ABCB7   10000 perm   2 sec   (5686 perm/sec)   p_kst 4.599000e-01   p_cons 9.180000e-02   p_joint 4.570000e-01

Joint ci ratio: 3.444144e-02	ci left: 3.862718e-01	ci right 3.998593e-01	k: 7861	n:20000
Cons ci ratio: 8.768346e-02	ci left: 8.685265e-02	ci right 9.486676e-02	k: 1816	n:20000
KS ci ratio: 2.969057e-02	ci left: 4.587173e-01	ci right 4.725927e-01	k: 9313	n:20000
ABCB7   20000 perm   4 sec   (4993 perm/sec)   p_kst 4.656500e-01   p_cons 9.080000e-02   p_joint 3.930500e-01

Outputting figure to mutsig2_images.part000000000001/ABCB7.3_2326_20000_0.46565_0.0908_0.39305.png
                gene_name: ABCB7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 74 percent done.
ABCB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
ABCB9   10000 perm   2 sec   (5751 perm/sec)   p_kst 3.217000e-01   p_cons 3.128000e-01   p_joint 4.355000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB9.3_2345_10000_0.3217_0.3128_0.4355.png
                gene_name: ABCB9
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 75 percent done.
ABCC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
Cons ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
KS ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
ABCC10   10000 perm   2 sec   (4709 perm/sec)   p_kst 9.506000e-01   p_cons 2.862000e-01   p_joint 5.899000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC10.3_4475_10000_0.9506_0.2862_0.5899.png
                gene_name: ABCC10
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 76 percent done.
ABCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
Cons ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
KS ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
ABCC6   10000 perm   2 sec   (4275 perm/sec)   p_kst 1.438000e-01   p_cons 2.180000e-02   p_joint 3.870000e-02

Joint ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
Cons ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
KS ci ratio: 6.837259e-02	ci left: 1.363027e-01	ci right 1.460018e-01	k: 2822	n:20000
ABCC6   20000 perm   5 sec   (3969 perm/sec)   p_kst 1.411000e-01   p_cons 2.230000e-02   p_joint 4.615000e-02

Joint ci ratio: 1.216245e-01	ci left: 3.142775e-02	ci right 3.552991e-02	k: 1003	n:30000
Cons ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
KS ci ratio: 5.604608e-02	ci left: 1.362566e-01	ci right 1.441466e-01	k: 4205	n:30000
ABCC6   30000 perm   8 sec   (3807 perm/sec)   p_kst 1.401667e-01   p_cons 2.066667e-02   p_joint 3.343333e-02

Joint ci ratio: 1.079295e-01	ci left: 3.019939e-02	ci right 3.366900e-02	k: 1276	n:40000
Cons ci ratio: 1.336611e-01	ci left: 1.964140e-02	ci right 2.247873e-02	k: 841	n:40000
KS ci ratio: 4.944354e-02	ci left: 1.324321e-01	ci right 1.391709e-01	k: 5431	n:40000
ABCC6   40000 perm   11 sec   (3692 perm/sec)   p_kst 1.357750e-01   p_cons 2.102500e-02   p_joint 3.190000e-02

Joint ci ratio: 1.073824e-01	ci left: 2.456429e-02	ci right 2.737112e-02	k: 1297	n:50000
Cons ci ratio: 1.199879e-01	ci left: 1.964460e-02	ci right 2.217145e-02	k: 1044	n:50000
KS ci ratio: 4.409606e-02	ci left: 1.334623e-01	ci right 1.395000e-01	k: 6823	n:50000
ABCC6   50000 perm   14 sec   (3622 perm/sec)   p_kst 1.364600e-01   p_cons 2.088000e-02   p_joint 2.594000e-02

Joint ci ratio: 9.564471e-02	ci left: 2.592928e-02	ci right 2.855005e-02	k: 1633	n:60000
Cons ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
KS ci ratio: 4.027912e-02	ci left: 1.335805e-01	ci right 1.390881e-01	k: 8179	n:60000
ABCC6   60000 perm   17 sec   (3534 perm/sec)   p_kst 1.363167e-01   p_cons 2.066667e-02   p_joint 2.721667e-02

Joint ci ratio: 9.318401e-02	ci left: 2.350696e-02	ci right 2.581838e-02	k: 1725	n:70000
Cons ci ratio: 9.845890e-02	ci left: 2.105155e-02	ci right 2.324546e-02	k: 1549	n:70000
KS ci ratio: 3.727392e-02	ci left: 1.338938e-01	ci right 1.389935e-01	k: 9550	n:70000
ABCC6   70000 perm   20 sec   (3471 perm/sec)   p_kst 1.364286e-01   p_cons 2.212857e-02   p_joint 2.464286e-02

Outputting figure to mutsig2_images.part000000000001/ABCC6.3_4717_70000_0.13643_0.022129_0.024643.png
                gene_name: ABCC6
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 78 percent done.
ABCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
Cons ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
KS ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
ABCF1   10000 perm   2 sec   (5334 perm/sec)   p_kst 3.942000e-01   p_cons 2.782000e-01   p_joint 5.031000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF1.3_2638_10000_0.3942_0.2782_0.5031.png
                gene_name: ABCF1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 79 percent done.
ABCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
Cons ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
KS ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
ABCF2   10000 perm   2 sec   (6317 perm/sec)   p_kst 2.734000e-01   p_cons 5.438000e-01   p_joint 3.132000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF2.3_1969_10000_0.2734_0.5438_0.3132.png
                gene_name: ABCF2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 81 percent done.
ABCG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
ABCG1   10000 perm   2 sec   (5517 perm/sec)   p_kst 6.942000e-01   p_cons 9.409000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCG1.3_2265_10000_0.6942_0.9409_1.png
                gene_name: ABCG1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ABHD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
ABHD10   10000 perm   2 sec   (6606 perm/sec)   p_kst 9.525000e-01   p_cons 3.355000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD10.3_941_10000_0.9525_0.3355_0.6985.png
                gene_name: ABHD10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 83 percent done.
ABHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.496762e-02	ci left: 8.661108e-01	ci right 8.792713e-01	k: 8728	n:10000
Cons ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
KS ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
ABHD2   10000 perm   2 sec   (6345 perm/sec)   p_kst 7.370000e-01   p_cons 9.553000e-01   p_joint 8.728000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD2.3_1314_10000_0.737_0.9553_0.8728.png
                gene_name: ABHD2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 85 percent done.
ABHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
ABHD6   10000 perm   1 sec   (7051 perm/sec)   p_kst 3.370000e-02   p_cons 5.993000e-01   p_joint 7.140000e-02

Joint ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
Cons ci ratio: 2.276550e-02	ci left: 5.903138e-01	ci right 6.039579e-01	k: 11943	n:20000
KS ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
ABHD6   20000 perm   3 sec   (6079 perm/sec)   p_kst 3.295000e-02   p_cons 5.971500e-01   p_joint 8.275000e-02

Joint ci ratio: 8.365433e-02	ci left: 6.533996e-02	ci right 7.107733e-02	k: 2045	n:30000
Cons ci ratio: 1.876847e-02	ci left: 5.869143e-01	ci right 5.980678e-01	k: 17775	n:30000
KS ci ratio: 1.223832e-01	ci left: 3.103958e-02	ci right 3.511817e-02	k: 991	n:30000
ABHD6   30000 perm   5 sec   (5707 perm/sec)   p_kst 3.303333e-02   p_cons 5.925000e-01   p_joint 6.816667e-02

Joint ci ratio: 8.045270e-02	ci left: 5.376660e-02	ci right 5.829812e-02	k: 2240	n:40000
Cons ci ratio: 1.617095e-02	ci left: 5.901450e-01	ci right 5.997912e-01	k: 23799	n:40000
KS ci ratio: 1.060980e-01	ci left: 3.124651e-02	ci right 3.477172e-02	k: 1319	n:40000
ABHD6   40000 perm   7 sec   (5468 perm/sec)   p_kst 3.297500e-02   p_cons 5.949750e-01   p_joint 5.600000e-02

Joint ci ratio: 6.160995e-02	ci left: 7.258774e-02	ci right 7.722176e-02	k: 3744	n:50000
Cons ci ratio: 1.441690e-02	ci left: 5.922244e-01	ci right 6.008444e-01	k: 29827	n:50000
KS ci ratio: 9.679396e-02	ci left: 3.022063e-02	ci right 3.331405e-02	k: 1587	n:50000
ABHD6   50000 perm   9 sec   (5298 perm/sec)   p_kst 3.174000e-02   p_cons 5.965400e-01   p_joint 7.488000e-02

Outputting figure to mutsig2_images.part000000000001/ABHD6.3_1046_50000_0.03174_0.59654_0.07488.png
                gene_name: ABHD6
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.077 

Current progress: 86 percent done.
ABI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
Cons ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
ABI2   10000 perm   1 sec   (6745 perm/sec)   p_kst 1.667000e-01   p_cons 2.631000e-01   p_joint 2.195000e-01

Outputting figure to mutsig2_images.part000000000001/ABI2.3_1468_10000_0.1667_0.2631_0.2195.png
                gene_name: ABI2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 88 percent done.
ABI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
KS ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
ABI3   10000 perm   2 sec   (6472 perm/sec)   p_kst 5.170000e-01   p_cons 3.029000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000001/ABI3.3_1133_10000_0.517_0.3029_0.4799.png
                gene_name: ABI3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 89 percent done.
A1BG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.426589e-02	ci left: 5.570197e-01	ci right 5.765413e-01	k: 5668	n:10000
KS ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
A1BG   10000 perm   2 sec   (6262 perm/sec)   p_kst 2.811000e-01   p_cons 5.668000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/A1BG.2_1520_10000_0.2811_0.5668_1.png
                gene_name: A1BG
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
AASDHPPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
AASDHPPT   10000 perm   1 sec   (6779 perm/sec)   p_kst 8.852000e-01   p_cons 5.891000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/AASDHPPT.2_954_10000_0.8852_0.5891_1.png
                gene_name: AASDHPPT
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ABCD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
ABCD4   10000 perm   2 sec   (6023 perm/sec)   p_kst 1.347000e-01   p_cons 2.420000e-01   p_joint 5.790000e-02

Joint ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
Cons ci ratio: 4.898946e-02	ci left: 2.365233e-01	ci right 2.484517e-01	k: 4849	n:20000
KS ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
ABCD4   20000 perm   4 sec   (5338 perm/sec)   p_kst 1.307000e-01   p_cons 2.424500e-01   p_joint 4.170000e-02

Joint ci ratio: 8.472587e-02	ci left: 6.377137e-02	ci right 6.944625e-02	k: 1997	n:30000
Cons ci ratio: 4.026289e-02	ci left: 2.352421e-01	ci right 2.449416e-01	k: 7202	n:30000
KS ci ratio: 5.875547e-02	ci left: 1.253909e-01	ci right 1.330144e-01	k: 3875	n:30000
ABCD4   30000 perm   6 sec   (4934 perm/sec)   p_kst 1.291667e-01   p_cons 2.400667e-01   p_joint 6.656667e-02

Outputting figure to mutsig2_images.part000000000001/ABCD4.2_1897_30000_0.12917_0.24007_0.066567.png
                gene_name: ABCD4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 93 percent done.
ABHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420449e-03	ci left: 9.949036e-01	ci right 9.973936e-01	k: 9963	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
ABHD1   10000 perm   2 sec   (6481 perm/sec)   p_kst 6.683000e-01   p_cons 9.682000e-01   p_joint 9.963000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD1.2_1254_10000_0.6683_0.9682_0.9963.png
                gene_name: ABHD1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 94 percent done.
ABHD12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
KS ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
ABHD12B   10000 perm   1 sec   (7013 perm/sec)   p_kst 9.740000e-02   p_cons 6.516000e-01   p_joint 6.353000e-01

Joint ci ratio: 4.919702e-02	ci left: 2.349865e-01	ci right 2.468889e-01	k: 4818	n:20000
Cons ci ratio: 2.022964e-02	ci left: 6.458036e-01	ci right 6.590520e-01	k: 13049	n:20000
KS ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
ABHD12B   20000 perm   3 sec   (6110 perm/sec)   p_kst 9.525000e-02   p_cons 6.524500e-01   p_joint 2.409000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD12B.2_920_20000_0.09525_0.65245_0.2409.png
                gene_name: ABHD12B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 96 percent done.
ABHD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
Cons ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KS ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
ABHD13   10000 perm   1 sec   (6887 perm/sec)   p_kst 6.973000e-01   p_cons 3.028000e-01   p_joint 7.536000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD13.2_1018_10000_0.6973_0.3028_0.7536.png
                gene_name: ABHD13
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 97 percent done.
ABHD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
Cons ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
ABHD8   10000 perm   2 sec   (6476 perm/sec)   p_kst 6.592000e-01   p_cons 3.972000e-01   p_joint 8.844000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD8.2_1336_10000_0.6592_0.3972_0.8844.png
                gene_name: ABHD8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 99 percent done.
ABI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
KS ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
ABI1   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.155000e-01   p_cons 4.847000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.872132e-02	ci left: 4.752529e-01	ci right 4.891523e-01	k: 9644	n:20000
KS ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
ABI1   20000 perm   4 sec   (5488 perm/sec)   p_kst 1.172500e-01   p_cons 4.822000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABI1.2_1630_20000_0.11725_0.4822_1.png
                gene_name: ABI1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000001
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 1 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 4421662: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000002> was used as the working directory.
Started at Wed Oct 24 17:29:25 2012
Results reported at Wed Oct 24 17:51:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000002.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000002.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 2  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000002.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1367.89 sec.
    Max Memory :      5356 MB
    Max Swap   :      7787 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
2
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 2
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 2: processing genes 91 - 181
Calculating significance of each gene.
Using projection method.
91	ABI3BP	2.131619e-01
92	ABL1	1
93	ABL2	9.938098e-01
94	ABLIM1	8.157704e-01
95	ABLIM2	8.361944e-01
96	ABLIM3	1.027980e-01
In gene ABO the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 849     n = 1	mu =   5.69e-07
97	ABO	3.936552e-01
98	ABP1	3.015339e-02
99	ABR	1
100	ABRA	2.815570e-01
101	ABT1	3.723457e-01
102	ABTB1	8.950182e-01
103	ABTB2	9.721023e-01
104	ACAA1	1
105	ACAA2	1.239813e-01
106	ACACA	9.999982e-01
107	ACACB	1
108	ACAD10	9.742784e-01
109	ACAD11	6.553186e-01
110	ACAD8	2.494577e-01
111	ACAD9	9.605361e-01
112	ACADL	1
113	ACADM	3.611442e-01
114	ACADS	1
115	ACADSB	1
116	ACADVL	1
117	ACAN	9.280067e-01
118	ACAP1	9.844087e-01
119	ACAP2	8.780472e-01
120	ACAP3	1
121	ACAT1	7.053012e-01
122	ACAT2	7.968759e-01
123	ACBD3	2.007214e-01
124	ACBD4	6.972640e-01
125	ACBD5	2.544630e-01
126	ACBD6	5.841157e-01
127	ACBD7	5.923618e-02
128	ACCN1	7.966087e-01
129	ACCN2	6.480468e-01
130	ACCN3	9.881957e-01
131	ACCN4	3.101749e-01
132	ACCN5	1
133	ACCS	1.958621e-01
134	ACCSL	1.360917e-01
135	ACD	6.271779e-01
136	ACE	9.918670e-01
137	ACE2	1
138	ACER1	2.666543e-01
139	ACER2	2.542363e-01
140	ACER3	1.707257e-01
141	ACHE	1
142	ACIN1	9.951653e-01
143	ACLY	9.953551e-01
144	ACMSD	8.800012e-01
145	ACN9	1.100752e-01
146	ACO1	6.184300e-01
147	ACO2	9.807743e-01
148	ACOT1	4.501326e-01
149	ACOT11	8.125374e-01
150	ACOT12	9.292925e-01
151	ACOT13	1
152	ACOT2	1
153	ACOT4	1
154	ACOT6	1.047333e-01
155	ACOT7	6.909706e-01
156	ACOT8	1
157	ACOT9	1
158	ACOX1	9.407771e-01
159	ACOX2	9.412689e-01
160	ACOX3	9.855244e-01
161	ACOXL	6.709615e-01
162	ACP1	4.569641e-01
163	ACP2	8.181856e-01
164	ACP5	2.560053e-01
165	ACP6	5.663742e-01
166	ACPL2	1
167	ACPP	2.260884e-02
168	ACPT	1
169	ACR	1
170	ACRBP	1
171	ACRC	1
172	ACRV1	2.139648e-01
173	ACSBG1	9.947267e-01
174	ACSBG2	1
175	ACSF2	1
176	ACSF3	6.843533e-01
177	ACSL1	6.918268e-01
178	ACSL3	7.418969e-01
179	ACSL4	8.970191e-01
180	ACSL5	9.798447e-01
181	ACSL6	1.695643e-01
Done

Running MutSig 2:
Scatter job 2: processing genes 91 - 181
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ACAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
Cons ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
KS ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
ACAN   10000 perm   3 sec   (3533 perm/sec)   p_kst 6.713000e-01   p_cons 4.394000e-01   p_joint 8.726000e-01

Outputting figure to mutsig2_images.part000000000002/ACAN.25_7661_10000_0.6713_0.4394_0.8726.png
                gene_name: ACAN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 2 percent done.
ACACB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
ACACB   10000 perm   3 sec   (3841 perm/sec)   p_kst 6.788000e-01   p_cons 5.910000e-02   p_joint 1.991000e-01

Joint ci ratio: 6.299545e-02	ci left: 1.570661e-01	ci right 1.673323e-01	k: 3243	n:20000
Cons ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
KS ci ratio: 1.994718e-02	ci left: 6.521815e-01	ci right 6.653723e-01	k: 13176	n:20000
ACACB   20000 perm   6 sec   (3478 perm/sec)   p_kst 6.588000e-01   p_cons 5.760000e-02   p_joint 1.621500e-01

Joint ci ratio: 5.233070e-02	ci left: 1.534276e-01	ci right 1.617055e-01	k: 4726	n:30000
Cons ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
KS ci ratio: 1.638010e-02	ci left: 6.508271e-01	ci right 6.616093e-01	k: 19687	n:30000
ACACB   30000 perm   9 sec   (3354 perm/sec)   p_kst 6.562333e-01   p_cons 5.740000e-02   p_joint 1.575333e-01

Outputting figure to mutsig2_images.part000000000002/ACACB.11_7585_30000_0.65623_0.0574_0.15753.png
                gene_name: ACACB
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 3 percent done.
ABP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
ABP1   10000 perm   2 sec   (4980 perm/sec)   p_kst 9.377000e-01   p_cons 6.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABP1.10_2272_10000_0.9377_0.659_1.png
                gene_name: ABP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
ACACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 6.528325e-03	ci left: 9.697378e-01	ci right 9.761827e-01	k: 9731	n:10000
ACACA   10000 perm   3 sec   (3842 perm/sec)   p_kst 9.731000e-01   p_cons 5.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACACA.10_7433_10000_0.9731_0.5252_1.png
                gene_name: ACACA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
ACE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
Cons ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
KS ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
ACE   10000 perm   2 sec   (4700 perm/sec)   p_kst 3.973000e-01   p_cons 2.225000e-01   p_joint 3.398000e-01

Outputting figure to mutsig2_images.part000000000002/ACE.10_4224_10000_0.3973_0.2225_0.3398.png
                gene_name: ACE
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 8 percent done.
ABI3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
Cons ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
KS ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
ABI3BP   10000 perm   2 sec   (4924 perm/sec)   p_kst 7.120000e-02   p_cons 2.552000e-01   p_joint 9.470000e-02

Joint ci ratio: 1.049536e-01	ci left: 6.176812e-02	ci right 6.865894e-02	k: 1303	n:20000
Cons ci ratio: 4.691481e-02	ci left: 2.526413e-01	ci right 2.648290e-01	k: 5174	n:20000
KS ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
ABI3BP   20000 perm   4 sec   (4484 perm/sec)   p_kst 7.515000e-02   p_cons 2.587000e-01   p_joint 6.515000e-02

Joint ci ratio: 1.038971e-01	ci left: 4.294170e-02	ci right 4.768020e-02	k: 1358	n:30000
Cons ci ratio: 3.861623e-02	ci left: 2.507043e-01	ci right 2.606097e-01	k: 7669	n:30000
KS ci ratio: 8.035231e-02	ci left: 7.053909e-02	ci right 7.647716e-02	k: 2204	n:30000
ABI3BP   30000 perm   7 sec   (4286 perm/sec)   p_kst 7.346667e-02   p_cons 2.556333e-01   p_joint 4.526667e-02

Joint ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
Cons ci ratio: 3.353225e-02	ci left: 2.503611e-01	ci right 2.589245e-01	k: 10185	n:40000
KS ci ratio: 6.967696e-02	ci left: 7.076443e-02	ci right 7.589772e-02	k: 2932	n:40000
ABI3BP   40000 perm   10 sec   (4139 perm/sec)   p_kst 7.330000e-02   p_cons 2.546250e-01   p_joint 4.477500e-02

Outputting figure to mutsig2_images.part000000000002/ABI3BP.8_3368_40000_0.0733_0.25462_0.044775.png
                gene_name: ABI3BP
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 9 percent done.
ABLIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.297085e-03	ci left: 9.530476e-01	ci right 9.610834e-01	k: 9572	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
ABLIM3   10000 perm   2 sec   (5344 perm/sec)   p_kst 9.757000e-01   p_cons 9.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABLIM3.8_2144_10000_0.9757_0.9572_1.png
                gene_name: ABLIM3
               theta_stop: 0.0083 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ACCSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
Cons ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
KS ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
ACCSL   10000 perm   2 sec   (5752 perm/sec)   p_kst 6.558000e-01   p_cons 6.519000e-01   p_joint 7.966000e-01

Outputting figure to mutsig2_images.part000000000002/ACCSL.8_1763_10000_0.6558_0.6519_0.7966.png
                gene_name: ACCSL
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 12 percent done.
ACSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
Cons ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
ACSL1   10000 perm   2 sec   (5631 perm/sec)   p_kst 5.918000e-01   p_cons 2.688000e-01   p_joint 7.313000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL1.8_2177_10000_0.5918_0.2688_0.7313.png
                gene_name: ACSL1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 14 percent done.
ABL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
Cons ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
KS ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
ABL2   10000 perm   2 sec   (4782 perm/sec)   p_kst 5.100000e-03   p_cons 8.588000e-01   p_joint 2.780000e-02

Joint ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
Cons ci ratio: 1.126104e-02	ci left: 8.534404e-01	ci right 8.631552e-01	k: 17167	n:20000
KS ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
ABL2   20000 perm   5 sec   (4394 perm/sec)   p_kst 4.800000e-03   p_cons 8.583500e-01   p_joint 2.790000e-02

Joint ci ratio: 1.595109e-01	ci left: 1.815744e-02	ci right 2.133653e-02	k: 591	n:30000
Cons ci ratio: 9.197530e-03	ci left: 8.542686e-01	ci right 8.621952e-01	k: 25748	n:30000
KS ci ratio: 3.258763e-01	ci left: 4.018883e-03	ci right 5.612681e-03	k: 143	n:30000
ABL2   30000 perm   7 sec   (4238 perm/sec)   p_kst 4.766667e-03   p_cons 8.582667e-01   p_joint 1.970000e-02

Joint ci ratio: 1.348937e-01	ci left: 1.927875e-02	ci right 2.209144e-02	k: 826	n:40000
Cons ci ratio: 7.991096e-03	ci left: 8.540107e-01	ci right 8.608874e-01	k: 34299	n:40000
KS ci ratio: 2.697914e-01	ci left: 4.542095e-03	ci right 5.981167e-03	k: 209	n:40000
ABL2   40000 perm   10 sec   (4121 perm/sec)   p_kst 5.225000e-03   p_cons 8.574750e-01   p_joint 2.065000e-02

Joint ci ratio: 1.370438e-01	ci left: 1.499564e-02	ci right 1.722105e-02	k: 804	n:50000
Cons ci ratio: 7.343778e-03	ci left: 8.475660e-01	ci right 8.538332e-01	k: 42536	n:50000
KS ci ratio: 2.348743e-01	ci left: 4.889416e-03	ci right 6.208989e-03	k: 276	n:50000
ABL2   50000 perm   12 sec   (4036 perm/sec)   p_kst 5.520000e-03   p_cons 8.507200e-01   p_joint 1.608000e-02

Joint ci ratio: 1.311695e-01	ci left: 1.370384e-02	ci right 1.564352e-02	k: 879	n:60000
Cons ci ratio: 6.692981e-03	ci left: 8.482598e-01	ci right 8.539728e-01	k: 51068	n:60000
KS ci ratio: 2.135720e-01	ci left: 4.987021e-03	ci right 6.194892e-03	k: 334	n:60000
ABL2   60000 perm   15 sec   (3958 perm/sec)   p_kst 5.566667e-03   p_cons 8.511333e-01   p_joint 1.465000e-02

Joint ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
Cons ci ratio: 6.191703e-03	ci left: 8.486714e-01	ci right 8.539566e-01	k: 59593	n:70000
KS ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
ABL2   70000 perm   18 sec   (3887 perm/sec)   p_kst 5.557143e-03   p_cons 8.513286e-01   p_joint 1.617143e-02

Joint ci ratio: 1.095156e-01	ci left: 1.489857e-02	ci right 1.663680e-02	k: 1260	n:80000
Cons ci ratio: 5.802454e-03	ci left: 8.483751e-01	ci right 8.533245e-01	k: 68069	n:80000
KS ci ratio: 1.830458e-01	ci left: 5.178137e-03	ci right 6.233196e-03	k: 455	n:80000
ABL2   80000 perm   21 sec   (3818 perm/sec)   p_kst 5.687500e-03   p_cons 8.508625e-01   p_joint 1.575000e-02

Joint ci ratio: 1.052146e-01	ci left: 1.438913e-02	ci right 1.599790e-02	k: 1366	n:90000
Cons ci ratio: 5.464278e-03	ci left: 8.488133e-01	ci right 8.534752e-01	k: 76604	n:90000
KS ci ratio: 1.692896e-01	ci left: 5.420723e-03	ci right 6.433743e-03	k: 532	n:90000
ABL2   90000 perm   24 sec   (3755 perm/sec)   p_kst 5.911111e-03   p_cons 8.511556e-01   p_joint 1.517778e-02

Joint ci ratio: 1.019808e-01	ci left: 1.381695e-02	ci right 1.531140e-02	k: 1455	n:100000
Cons ci ratio: 5.187453e-03	ci left: 8.487577e-01	ci right 8.531819e-01	k: 85098	n:100000
KS ci ratio: 1.607693e-01	ci left: 5.434710e-03	ci right 6.394289e-03	k: 590	n:100000
ABL2   100000 perm   27 sec   (3700 perm/sec)   p_kst 5.900000e-03   p_cons 8.509800e-01   p_joint 1.455000e-02

Joint ci ratio: 1.069172e-01	ci left: 1.142684e-02	ci right 1.272635e-02	k: 1327	n:110000
Cons ci ratio: 4.940682e-03	ci left: 8.491379e-01	ci right 8.533526e-01	k: 93638	n:110000
KS ci ratio: 1.523591e-01	ci left: 5.525905e-03	ci right 6.445889e-03	k: 657	n:110000
ABL2   110000 perm   30 sec   (3636 perm/sec)   p_kst 5.972727e-03   p_cons 8.512545e-01   p_joint 1.206364e-02

Joint ci ratio: 9.229984e-02	ci left: 1.412437e-02	ci right 1.549922e-02	k: 1776	n:120000
Cons ci ratio: 4.726531e-03	ci left: 8.494335e-01	ci right 8.534662e-01	k: 102175	n:120000
KS ci ratio: 1.460590e-01	ci left: 5.530707e-03	ci right 6.410093e-03	k: 715	n:120000
ABL2   120000 perm   34 sec   (3575 perm/sec)   p_kst 5.958333e-03   p_cons 8.514583e-01   p_joint 1.480000e-02

Joint ci ratio: 9.083630e-02	ci left: 1.348113e-02	ci right 1.477144e-02	k: 1835	n:130000
Cons ci ratio: 4.549463e-03	ci left: 8.490449e-01	ci right 8.529240e-01	k: 110629	n:130000
KS ci ratio: 1.404809e-01	ci left: 5.535433e-03	ci right 6.379141e-03	k: 773	n:130000
ABL2   130000 perm   37 sec   (3515 perm/sec)   p_kst 5.946154e-03   p_cons 8.509923e-01   p_joint 1.411538e-02

Joint ci ratio: 7.777581e-02	ci left: 1.712782e-02	ci right 1.852082e-02	k: 2494	n:140000
Cons ci ratio: 4.383713e-03	ci left: 8.491311e-01	ci right 8.528687e-01	k: 119141	n:140000
KS ci ratio: 1.345242e-01	ci left: 5.622866e-03	ci right 6.440653e-03	k: 843	n:140000
ABL2   140000 perm   41 sec   (3456 perm/sec)   p_kst 6.021429e-03   p_cons 8.510071e-01   p_joint 1.781429e-02

Joint ci ratio: 7.404912e-02	ci left: 1.766042e-02	ci right 1.902495e-02	k: 2750	n:150000
Cons ci ratio: 4.234295e-03	ci left: 8.492415e-01	ci right 8.528516e-01	k: 127658	n:150000
KS ci ratio: 1.294800e-01	ci left: 5.679938e-03	ci right 6.472670e-03	k: 910	n:150000
ABL2   150000 perm   44 sec   (3408 perm/sec)   p_kst 6.066667e-03   p_cons 8.510533e-01   p_joint 1.833333e-02

Joint ci ratio: 7.826326e-02	ci left: 1.483295e-02	ci right 1.604720e-02	k: 2469	n:160000
Cons ci ratio: 3.932292e-03	ci left: 8.596219e-01	ci right 8.630150e-01	k: 137812	n:160000
KS ci ratio: 1.260709e-01	ci left: 5.627444e-03	ci right 6.390624e-03	k: 960	n:160000
ABL2   160000 perm   48 sec   (3359 perm/sec)   p_kst 6.000000e-03   p_cons 8.613250e-01   p_joint 1.543125e-02

Joint ci ratio: 7.788443e-02	ci left: 1.411018e-02	ci right 1.525940e-02	k: 2495	n:170000
Cons ci ratio: 3.818192e-03	ci left: 8.594646e-01	ci right 8.627583e-01	k: 146390	n:170000
KS ci ratio: 1.215937e-01	ci left: 5.706844e-03	ci right 6.451328e-03	k: 1032	n:170000
ABL2   170000 perm   51 sec   (3312 perm/sec)   p_kst 6.070588e-03   p_cons 8.611176e-01   p_joint 1.467647e-02

Joint ci ratio: 8.437250e-02	ci left: 1.134976e-02	ci right 1.235495e-02	k: 2132	n:180000
Cons ci ratio: 3.706578e-03	ci left: 8.597728e-01	ci right 8.629711e-01	k: 155048	n:180000
KS ci ratio: 1.193687e-01	ci left: 5.599915e-03	ci right 6.316137e-03	k: 1071	n:180000
ABL2   180000 perm   55 sec   (3264 perm/sec)   p_kst 5.950000e-03   p_cons 8.613778e-01   p_joint 1.184444e-02

Joint ci ratio: 8.510814e-02	ci left: 1.057191e-02	ci right 1.151678e-02	k: 2097	n:190000
Cons ci ratio: 3.605313e-03	ci left: 8.599757e-01	ci right 8.630870e-01	k: 163692	n:190000
KS ci ratio: 1.168388e-01	ci left: 5.545234e-03	ci right 6.238393e-03	k: 1118	n:190000
ABL2   190000 perm   59 sec   (3216 perm/sec)   p_kst 5.884211e-03   p_cons 8.615368e-01   p_joint 1.103684e-02

Joint ci ratio: 7.228802e-02	ci left: 1.396592e-02	ci right 1.501822e-02	k: 2897	n:200000
Cons ci ratio: 3.512798e-03	ci left: 8.600990e-01	ci right 8.631306e-01	k: 172324	n:200000
KS ci ratio: 1.162311e-01	ci left: 5.326188e-03	ci right 5.988264e-03	k: 1130	n:200000
ABL2   200000 perm   63 sec   (3171 perm/sec)   p_kst 5.650000e-03   p_cons 8.616200e-01   p_joint 1.448500e-02

Joint ci ratio: 7.082867e-02	ci left: 1.386673e-02	ci right 1.488960e-02	k: 3018	n:210000
Cons ci ratio: 3.425208e-03	ci left: 8.603405e-01	ci right 8.632971e-01	k: 180983	n:210000
KS ci ratio: 1.127422e-01	ci left: 5.400986e-03	ci right 6.050867e-03	k: 1201	n:210000
ABL2   210000 perm   67 sec   (3128 perm/sec)   p_kst 5.719048e-03   p_cons 8.618238e-01   p_joint 1.437143e-02

Joint ci ratio: 7.085215e-02	ci left: 1.323627e-02	ci right 1.421297e-02	k: 3018	n:220000
Cons ci ratio: 3.346727e-03	ci left: 8.603554e-01	ci right 8.632441e-01	k: 189597	n:220000
KS ci ratio: 1.100726e-01	ci left: 5.416198e-03	ci right 6.051477e-03	k: 1260	n:220000
ABL2   220000 perm   71 sec   (3089 perm/sec)   p_kst 5.727273e-03   p_cons 8.618045e-01   p_joint 1.371818e-02

Joint ci ratio: 6.958852e-02	ci left: 1.313489e-02	ci right 1.408612e-02	k: 3129	n:230000
Cons ci ratio: 3.271133e-03	ci left: 8.605357e-01	ci right 8.633595e-01	k: 198249	n:230000
KS ci ratio: 1.075842e-01	ci left: 5.430252e-03	ci right 6.051868e-03	k: 1319	n:230000
ABL2   230000 perm   75 sec   (3050 perm/sec)   p_kst 5.734783e-03   p_cons 8.619522e-01   p_joint 1.360435e-02

Joint ci ratio: 7.001764e-02	ci left: 1.244006e-02	ci right 1.334676e-02	k: 3093	n:240000
Cons ci ratio: 3.198699e-03	ci left: 8.608313e-01	ci right 8.635933e-01	k: 206932	n:240000
KS ci ratio: 1.057597e-01	ci left: 5.390539e-03	ci right 5.996493e-03	k: 1365	n:240000
ABL2   240000 perm   80 sec   (3012 perm/sec)   p_kst 5.687500e-03   p_cons 8.622167e-01   p_joint 1.288750e-02

Joint ci ratio: 7.208036e-02	ci left: 1.127036e-02	ci right 1.211701e-02	k: 2922	n:250000
Cons ci ratio: 3.132603e-03	ci left: 8.609712e-01	ci right 8.636764e-01	k: 215582	n:250000
KS ci ratio: 1.036199e-01	ci left: 5.396948e-03	ci right 5.990600e-03	k: 1422	n:250000
ABL2   250000 perm   84 sec   (2976 perm/sec)   p_kst 5.688000e-03   p_cons 8.623280e-01   p_joint 1.168800e-02

Joint ci ratio: 7.340316e-02	ci left: 1.045155e-02	ci right 1.125171e-02	k: 2820	n:260000
Cons ci ratio: 3.073922e-03	ci left: 8.608305e-01	ci right 8.634845e-01	k: 224162	n:260000
KS ci ratio: 1.019868e-01	ci left: 5.361742e-03	ci right 5.941669e-03	k: 1468	n:260000
ABL2   260000 perm   88 sec   (2941 perm/sec)   p_kst 5.646154e-03   p_cons 8.621615e-01   p_joint 1.084615e-02

Joint ci ratio: 6.912534e-02	ci left: 1.136332e-02	ci right 1.218055e-02	k: 3177	n:270000
Cons ci ratio: 3.016066e-03	ci left: 8.608867e-01	ci right 8.634907e-01	k: 232792	n:270000
KS ci ratio: 9.937848e-02	ci left: 5.444785e-03	ci right 6.017755e-03	k: 1546	n:270000
ABL2   270000 perm   93 sec   (2905 perm/sec)   p_kst 5.725926e-03   p_cons 8.621926e-01   p_joint 1.176667e-02

Outputting figure to mutsig2_images.part000000000002/ABL2.7_3758_270000_0.0057259_0.86219_0.011767.png
                gene_name: ABL2
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0057 
        ci_ks_bounds_left: 0.0054 
       ci_ks_bounds_right: 0.0060 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 15 percent done.
ACPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
Cons ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
KS ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
ACPP   10000 perm   2 sec   (5685 perm/sec)   p_kst 2.539000e-01   p_cons 3.963000e-01   p_joint 4.443000e-01

Outputting figure to mutsig2_images.part000000000002/ACPP.7_1324_10000_0.2539_0.3963_0.4443.png
                gene_name: ACPP
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
ACSL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
ACSL6   10000 perm   2 sec   (5086 perm/sec)   p_kst 1.148000e-01   p_cons 2.024000e-01   p_joint 1.348000e-01

Joint ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
Cons ci ratio: 5.439305e-02	ci left: 2.005120e-01	ci right 2.117736e-01	k: 4122	n:20000
KS ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
ACSL6   20000 perm   4 sec   (4549 perm/sec)   p_kst 1.160000e-01   p_cons 2.061000e-01   p_joint 1.214500e-01

Outputting figure to mutsig2_images.part000000000002/ACSL6.7_2335_20000_0.116_0.2061_0.12145.png
                gene_name: ACSL6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 18 percent done.
ACAD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
Cons ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
KS ci ratio: 7.999633e-03	ci left: 9.560775e-01	ci right 9.638516e-01	k: 9601	n:10000
ACAD10   10000 perm   2 sec   (4929 perm/sec)   p_kst 9.601000e-01   p_cons 2.091000e-01   p_joint 5.854000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD10.6_3357_10000_0.9601_0.2091_0.5854.png
                gene_name: ACAD10
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
ACOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
ACOX3   10000 perm   2 sec   (5244 perm/sec)   p_kst 4.317000e-01   p_cons 3.023000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX3.6_2171_10000_0.4317_0.3023_0.4437.png
                gene_name: ACOX3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 21 percent done.
ABLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
Cons ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
ABLIM1   10000 perm   2 sec   (5469 perm/sec)   p_kst 9.280000e-02   p_cons 4.103000e-01   p_joint 1.847000e-01

Joint ci ratio: 6.117036e-02	ci left: 1.651136e-01	ci right 1.755824e-01	k: 3406	n:20000
Cons ci ratio: 3.271100e-02	ci left: 4.110519e-01	ci right 4.247720e-01	k: 8358	n:20000
KS ci ratio: 8.651020e-02	ci left: 8.905828e-02	ci right 9.716047e-02	k: 1861	n:20000
ABLIM1   20000 perm   4 sec   (4933 perm/sec)   p_kst 9.305000e-02   p_cons 4.179000e-01   p_joint 1.703000e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM1.5_2581_20000_0.09305_0.4179_0.1703.png
                gene_name: ABLIM1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 23 percent done.
ACBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
ACBD3   10000 perm   2 sec   (5658 perm/sec)   p_kst 9.350000e-02   p_cons 2.852000e-01   p_joint 9.840000e-02

Joint ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
Cons ci ratio: 4.333415e-02	ci left: 2.840152e-01	ci right 2.966458e-01	k: 5806	n:20000
KS ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
ACBD3   20000 perm   4 sec   (5085 perm/sec)   p_kst 9.625000e-02   p_cons 2.903000e-01   p_joint 6.160000e-02

Joint ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
Cons ci ratio: 3.533793e-02	ci left: 2.856981e-01	ci right 2.960091e-01	k: 8725	n:30000
KS ci ratio: 6.969054e-02	ci left: 9.206559e-02	ci right 9.874633e-02	k: 2861	n:30000
ACBD3   30000 perm   6 sec   (4849 perm/sec)   p_kst 9.536667e-02   p_cons 2.908333e-01   p_joint 7.120000e-02

Outputting figure to mutsig2_images.part000000000002/ACBD3.5_1619_30000_0.095367_0.29083_0.0712.png
                gene_name: ACBD3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 24 percent done.
ACCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
Cons ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
KS ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
ACCN1   10000 perm   2 sec   (5508 perm/sec)   p_kst 6.113000e-01   p_cons 8.390000e-01   p_joint 7.886000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN1.5_2291_10000_0.6113_0.839_0.7886.png
                gene_name: ACCN1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
ACCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
Cons ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
KS ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
ACCN4   10000 perm   2 sec   (5494 perm/sec)   p_kst 3.028000e-01   p_cons 1.210000e-01   p_joint 3.100000e-01

Joint ci ratio: 3.829029e-02	ci left: 3.372154e-01	ci right 3.504300e-01	k: 6876	n:20000
Cons ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
KS ci ratio: 4.118508e-02	ci left: 3.052834e-01	ci right 3.181714e-01	k: 6234	n:20000
ACCN4   20000 perm   4 sec   (4862 perm/sec)   p_kst 3.117000e-01   p_cons 1.294000e-01   p_joint 3.438000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN4.5_2041_20000_0.3117_0.1294_0.3438.png
                gene_name: ACCN4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 27 percent done.
ACCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
ACCS   10000 perm   2 sec   (5359 perm/sec)   p_kst 2.725000e-01   p_cons 1.596000e-01   p_joint 1.817000e-01

Outputting figure to mutsig2_images.part000000000002/ACCS.5_1562_10000_0.2725_0.1596_0.1817.png
                gene_name: ACCS
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 29 percent done.
ABRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
KS ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
ABRA   10000 perm   2 sec   (6314 perm/sec)   p_kst 8.785000e-01   p_cons 2.242000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000002/ABRA.4_1154_10000_0.8785_0.2242_0.6978.png
                gene_name: ABRA
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 30 percent done.
ACAA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
Cons ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
KS ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
ACAA2   10000 perm   2 sec   (5922 perm/sec)   p_kst 7.310000e-02   p_cons 1.611000e-01   p_joint 8.340000e-02

Joint ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
Cons ci ratio: 6.352209e-02	ci left: 1.548452e-01	ci right 1.650539e-01	k: 3198	n:20000
KS ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
ACAA2   20000 perm   4 sec   (5204 perm/sec)   p_kst 7.085000e-02   p_cons 1.599000e-01   p_joint 8.750000e-02

Joint ci ratio: 7.636842e-02	ci left: 7.764190e-02	ci right 8.383958e-02	k: 2421	n:30000
Cons ci ratio: 5.146108e-02	ci left: 1.578799e-01	ci right 1.662524e-01	k: 4861	n:30000
KS ci ratio: 8.211420e-02	ci left: 6.769370e-02	ci right 7.352312e-02	k: 2117	n:30000
ACAA2   30000 perm   6 sec   (4994 perm/sec)   p_kst 7.056667e-02   p_cons 1.620333e-01   p_joint 8.070000e-02

Outputting figure to mutsig2_images.part000000000002/ACAA2.4_1234_30000_0.070567_0.16203_0.0807.png
                gene_name: ACAA2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 32 percent done.
ACAD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
Cons ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
KS ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
ACAD11   10000 perm   2 sec   (5624 perm/sec)   p_kst 5.682000e-01   p_cons 2.102000e-01   p_joint 5.547000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD11.4_2423_10000_0.5682_0.2102_0.5547.png
                gene_name: ACAD11
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 33 percent done.
ACBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
ACBD5   10000 perm   2 sec   (5493 perm/sec)   p_kst 1.089000e-01   p_cons 6.461000e-01   p_joint 2.304000e-01

Joint ci ratio: 5.737079e-02	ci left: 1.837923e-01	ci right 1.946982e-01	k: 3784	n:20000
Cons ci ratio: 2.035020e-02	ci left: 6.430922e-01	ci right 6.563643e-01	k: 12995	n:20000
KS ci ratio: 8.056057e-02	ci left: 1.015697e-01	ci right 1.101452e-01	k: 2116	n:20000
ACBD5   20000 perm   4 sec   (4968 perm/sec)   p_kst 1.058000e-01   p_cons 6.497500e-01   p_joint 1.892000e-01

Outputting figure to mutsig2_images.part000000000002/ACBD5.4_1630_20000_0.1058_0.64975_0.1892.png
                gene_name: ACBD5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 35 percent done.
ACIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
Cons ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
ACIN1   10000 perm   2 sec   (4824 perm/sec)   p_kst 1.880000e-02   p_cons 4.440000e-02   p_joint 5.050000e-02

Joint ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
Cons ci ratio: 1.299748e-01	ci left: 4.066614e-02	ci right 4.636753e-02	k: 869	n:20000
KS ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
ACIN1   20000 perm   5 sec   (4364 perm/sec)   p_kst 1.795000e-02   p_cons 4.345000e-02   p_joint 2.435000e-02

Joint ci ratio: 1.990167e-01	ci left: 1.149527e-02	ci right 1.406704e-02	k: 382	n:30000
Cons ci ratio: 1.072028e-01	ci left: 4.037492e-02	ci right 4.498084e-02	k: 1279	n:30000
KS ci ratio: 1.653015e-01	ci left: 1.687736e-02	ci right 1.995025e-02	k: 551	n:30000
ACIN1   30000 perm   7 sec   (4150 perm/sec)   p_kst 1.836667e-02   p_cons 4.263333e-02   p_joint 1.273333e-02

Joint ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
Cons ci ratio: 9.249214e-02	ci left: 4.098388e-02	ci right 4.498281e-02	k: 1718	n:40000
KS ci ratio: 1.448697e-01	ci left: 1.667146e-02	ci right 1.929918e-02	k: 718	n:40000
ACIN1   40000 perm   10 sec   (4023 perm/sec)   p_kst 1.795000e-02   p_cons 4.295000e-02   p_joint 1.857500e-02

Joint ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
Cons ci ratio: 8.258221e-02	ci left: 4.133651e-02	ci right 4.491678e-02	k: 2155	n:50000
KS ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
ACIN1   50000 perm   13 sec   (3913 perm/sec)   p_kst 1.844000e-02   p_cons 4.310000e-02   p_joint 1.730000e-02

Joint ci ratio: 1.317021e-01	ci left: 1.359095e-02	ci right 1.552309e-02	k: 872	n:60000
Cons ci ratio: 7.566557e-02	ci left: 4.119426e-02	ci right 4.445015e-02	k: 2568	n:60000
KS ci ratio: 1.158750e-01	ci left: 1.763108e-02	ci right 1.981582e-02	k: 1122	n:60000
ACIN1   60000 perm   16 sec   (3829 perm/sec)   p_kst 1.870000e-02   p_cons 4.280000e-02   p_joint 1.453333e-02

Joint ci ratio: 1.062579e-01	ci left: 1.805711e-02	ci right 2.009732e-02	k: 1334	n:70000
Cons ci ratio: 7.255683e-02	ci left: 3.857433e-02	ci right 4.149253e-02	k: 2801	n:70000
KS ci ratio: 1.086467e-01	ci left: 1.726432e-02	ci right 1.926161e-02	k: 1277	n:70000
ACIN1   70000 perm   19 sec   (3757 perm/sec)   p_kst 1.824286e-02   p_cons 4.001429e-02   p_joint 1.905714e-02

Joint ci ratio: 1.039963e-01	ci left: 1.654174e-02	ci right 1.836849e-02	k: 1395	n:80000
Cons ci ratio: 6.770887e-02	ci left: 3.884929e-02	ci right 4.158418e-02	k: 3216	n:80000
KS ci ratio: 1.022220e-01	ci left: 1.712653e-02	ci right 1.898366e-02	k: 1443	n:80000
ACIN1   80000 perm   22 sec   (3689 perm/sec)   p_kst 1.803750e-02   p_cons 4.020000e-02   p_joint 1.743750e-02

Joint ci ratio: 1.067311e-01	ci left: 1.397794e-02	ci right 1.556467e-02	k: 1328	n:90000
Cons ci ratio: 6.089064e-02	ci left: 4.268018e-02	ci right 4.537153e-02	k: 3961	n:90000
KS ci ratio: 9.624027e-02	ci left: 1.722819e-02	ci right 1.898084e-02	k: 1628	n:90000
ACIN1   90000 perm   25 sec   (3628 perm/sec)   p_kst 1.808889e-02   p_cons 4.401111e-02   p_joint 1.475556e-02

Joint ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
Cons ci ratio: 5.765114e-02	ci left: 4.291459e-02	ci right 4.547193e-02	k: 4418	n:100000
KS ci ratio: 9.089329e-02	ci left: 1.742937e-02	ci right 1.909874e-02	k: 1825	n:100000
ACIN1   100000 perm   28 sec   (3575 perm/sec)   p_kst 1.825000e-02   p_cons 4.418000e-02   p_joint 1.665000e-02

Outputting figure to mutsig2_images.part000000000002/ACIN1.4_4249_100000_0.01825_0.04418_0.01665.png
                gene_name: ACIN1
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 36 percent done.
ACO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
Cons ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
ACO1   10000 perm   2 sec   (5095 perm/sec)   p_kst 3.445000e-01   p_cons 2.193000e-01   p_joint 5.037000e-01

Outputting figure to mutsig2_images.part000000000002/ACO1.4_2750_10000_0.3445_0.2193_0.5037.png
                gene_name: ACO1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 38 percent done.
ACOT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
Cons ci ratio: 8.175097e-03	ci left: 9.543007e-01	ci right 9.622295e-01	k: 9584	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
ACOT12   10000 perm   2 sec   (5651 perm/sec)   p_kst 7.105000e-01   p_cons 9.584000e-01   p_joint 9.538000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT12.4_1728_10000_0.7105_0.9584_0.9538.png
                gene_name: ACOT12
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 39 percent done.
ACOXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
ACOXL   10000 perm   2 sec   (5665 perm/sec)   p_kst 7.021000e-01   p_cons 3.139000e-01   p_joint 9.792000e-01

Outputting figure to mutsig2_images.part000000000002/ACOXL.4_1811_10000_0.7021_0.3139_0.9792.png
                gene_name: ACOXL
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 41 percent done.
ACRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.009309e-02	ci left: 2.894418e-01	ci right 3.074757e-01	k: 2984	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 2.741570e-02	ci left: 6.621957e-01	ci right 6.807043e-01	k: 6715	n:10000
ACRC   10000 perm   2 sec   (5399 perm/sec)   p_kst 6.715000e-01   p_cons 3.900000e-02   p_joint 2.984000e-01

Joint ci ratio: 7.328493e-02	ci left: 1.205447e-01	ci right 1.297646e-01	k: 2502	n:20000
Cons ci ratio: 1.407181e-01	ci left: 3.471622e-02	ci right 4.001937e-02	k: 746	n:20000
KS ci ratio: 2.004709e-02	ci left: 6.499215e-01	ci right 6.631330e-01	k: 13131	n:20000
ACRC   20000 perm   4 sec   (4803 perm/sec)   p_kst 6.565500e-01   p_cons 3.730000e-02   p_joint 1.251000e-01

Joint ci ratio: 6.533576e-02	ci left: 1.036222e-01	ci right 1.106541e-01	k: 3213	n:30000
Cons ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
KS ci ratio: 1.634865e-02	ci left: 6.516969e-01	ci right 6.624726e-01	k: 19713	n:30000
ACRC   30000 perm   7 sec   (4577 perm/sec)   p_kst 6.571000e-01   p_cons 3.103333e-02   p_joint 1.071000e-01

Joint ci ratio: 6.063543e-02	ci left: 9.172431e-02	ci right 9.748470e-02	k: 3783	n:40000
Cons ci ratio: 1.088128e-01	ci left: 2.971253e-02	ci right 3.315593e-02	k: 1256	n:40000
KS ci ratio: 1.426226e-02	ci left: 6.491141e-01	ci right 6.584635e-01	k: 26152	n:40000
ACRC   40000 perm   9 sec   (4433 perm/sec)   p_kst 6.538000e-01   p_cons 3.140000e-02   p_joint 9.457500e-02

Joint ci ratio: 4.415603e-02	ci left: 1.331453e-01	ci right 1.391770e-01	k: 6807	n:50000
Cons ci ratio: 9.483775e-02	ci left: 3.147091e-02	ci right 3.462361e-02	k: 1651	n:50000
KS ci ratio: 1.278930e-02	ci left: 6.484478e-01	ci right 6.568144e-01	k: 32632	n:50000
ACRC   50000 perm   12 sec   (4332 perm/sec)   p_kst 6.526400e-01   p_cons 3.302000e-02   p_joint 1.361400e-01

Outputting figure to mutsig2_images.part000000000002/ACRC.4_2124_50000_0.65264_0.03302_0.13614.png
                gene_name: ACRC
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
ACSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
Cons ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
ACSF3   10000 perm   2 sec   (5799 perm/sec)   p_kst 2.466000e-01   p_cons 5.271000e-01   p_joint 4.299000e-01

Outputting figure to mutsig2_images.part000000000002/ACSF3.4_1767_10000_0.2466_0.5271_0.4299.png
                gene_name: ACSF3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 44 percent done.
ABT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
Cons ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
KS ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
ABT1   10000 perm   2 sec   (6664 perm/sec)   p_kst 1.660000e-01   p_cons 7.090000e-02   p_joint 1.249000e-01

Joint ci ratio: 4.876383e-02	ci left: 2.382089e-01	ci right 2.501655e-01	k: 4883	n:20000
Cons ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
KS ci ratio: 6.229770e-02	ci left: 1.600772e-01	ci right 1.704203e-01	k: 3304	n:20000
ABT1   20000 perm   3 sec   (5868 perm/sec)   p_kst 1.652000e-01   p_cons 7.245000e-02   p_joint 2.441500e-01

Outputting figure to mutsig2_images.part000000000002/ABT1.3_831_20000_0.1652_0.07245_0.24415.png
                gene_name: ABT1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
ACAD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
Cons ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
KS ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
ACAD8   10000 perm   2 sec   (6080 perm/sec)   p_kst 2.501000e-01   p_cons 7.165000e-01   p_joint 3.234000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD8.3_1292_10000_0.2501_0.7165_0.3234.png
                gene_name: ACAD8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 47 percent done.
ACAD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
Cons ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
KS ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
ACAD9   10000 perm   2 sec   (5987 perm/sec)   p_kst 5.843000e-01   p_cons 1.154000e-01   p_joint 4.247000e-01

Joint ci ratio: 4.174841e-02	ci left: 2.995175e-01	ci right 3.123390e-01	k: 6118	n:20000
Cons ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
KS ci ratio: 2.351357e-02	ci left: 5.746267e-01	ci right 5.883496e-01	k: 11630	n:20000
ACAD9   20000 perm   4 sec   (5287 perm/sec)   p_kst 5.815000e-01   p_cons 1.142000e-01   p_joint 3.059000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD9.3_1938_20000_0.5815_0.1142_0.3059.png
                gene_name: ACAD9
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 48 percent done.
ACADM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
ACADM   10000 perm   2 sec   (6276 perm/sec)   p_kst 7.513000e-01   p_cons 1.248000e-01   p_joint 4.576000e-01

Joint ci ratio: 2.575954e-02	ci left: 5.296091e-01	ci right 5.434802e-01	k: 10731	n:20000
Cons ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
KS ci ratio: 1.612481e-02	ci left: 7.410656e-01	ci right 7.531625e-01	k: 14943	n:20000
ACADM   20000 perm   4 sec   (5516 perm/sec)   p_kst 7.471500e-01   p_cons 1.277000e-01   p_joint 5.365500e-01

Outputting figure to mutsig2_images.part000000000002/ACADM.3_1326_20000_0.74715_0.1277_0.53655.png
                gene_name: ACADM
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
ACAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.100567e-02	ci left: 9.217260e-01	ci right 9.320237e-01	k: 9270	n:10000
KS ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
ACAP2   10000 perm   2 sec   (5611 perm/sec)   p_kst 4.062000e-01   p_cons 9.270000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAP2.3_2429_10000_0.4062_0.927_1.png
                gene_name: ACAP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ACAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
Cons ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
KS ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
ACAP3   10000 perm   2 sec   (5480 perm/sec)   p_kst 1.767000e-01   p_cons 1.924000e-01   p_joint 2.660000e-01

Outputting figure to mutsig2_images.part000000000002/ACAP3.3_2601_10000_0.1767_0.1924_0.266.png
                gene_name: ACAP3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
ACCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
Cons ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
KS ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
ACCN2   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.370000e-01   p_cons 8.918000e-01   p_joint 2.609000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN2.3_1769_10000_0.137_0.8918_0.2609.png
                gene_name: ACCN2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 55 percent done.
ACD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
Cons ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
ACD   10000 perm   2 sec   (5927 perm/sec)   p_kst 5.935000e-01   p_cons 6.891000e-01   p_joint 8.454000e-01

Outputting figure to mutsig2_images.part000000000002/ACD.3_1683_10000_0.5935_0.6891_0.8454.png
                gene_name: ACD
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 56 percent done.
ACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
KS ci ratio: 1.283710e-02	ci left: 8.972367e-01	ci right 9.089273e-01	k: 9032	n:10000
ACE2   10000 perm   2 sec   (5792 perm/sec)   p_kst 9.032000e-01   p_cons 8.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACE2.3_2490_10000_0.9032_0.818_1.png
                gene_name: ACE2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ACER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
Cons ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
KS ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
ACER3   10000 perm   2 sec   (6502 perm/sec)   p_kst 2.224000e-01   p_cons 1.687000e-01   p_joint 1.223000e-01

Joint ci ratio: 6.823194e-02	ci left: 1.367955e-01	ci right 1.465089e-01	k: 2832	n:20000
Cons ci ratio: 5.735210e-02	ci left: 1.838912e-01	ci right 1.947992e-01	k: 3786	n:20000
KS ci ratio: 5.178460e-02	ci left: 2.168999e-01	ci right 2.284808e-01	k: 4453	n:20000
ACER3   20000 perm   3 sec   (5736 perm/sec)   p_kst 2.226500e-01   p_cons 1.893000e-01   p_joint 1.416000e-01

Outputting figure to mutsig2_images.part000000000002/ACER3.3_848_20000_0.22265_0.1893_0.1416.png
                gene_name: ACER3
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
ACHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
Cons ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
KS ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
ACHE   10000 perm   2 sec   (5733 perm/sec)   p_kst 3.996000e-01   p_cons 4.306000e-01   p_joint 4.922000e-01

Outputting figure to mutsig2_images.part000000000002/ACHE.3_1996_10000_0.3996_0.4306_0.4922.png
                gene_name: ACHE
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 61 percent done.
ACOT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
Cons ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
KS ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
ACOT6   10000 perm   2 sec   (6590 perm/sec)   p_kst 4.140000e-01   p_cons 5.330000e-02   p_joint 2.136000e-01

Joint ci ratio: 6.089053e-02	ci left: 1.663977e-01	ci right 1.768979e-01	k: 3432	n:20000
Cons ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
KS ci ratio: 3.344801e-02	ci left: 4.002801e-01	ci right 4.139470e-01	k: 8142	n:20000
ACOT6   20000 perm   3 sec   (5726 perm/sec)   p_kst 4.071000e-01   p_cons 5.195000e-02   p_joint 1.716000e-01

Joint ci ratio: 4.695294e-02	ci left: 1.840879e-01	ci right 1.929725e-01	k: 5655	n:30000
Cons ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
KS ci ratio: 2.731293e-02	ci left: 4.014999e-01	ci right 4.126515e-01	k: 12212	n:30000
ACOT6   30000 perm   6 sec   (5407 perm/sec)   p_kst 4.070667e-01   p_cons 5.176667e-02   p_joint 1.885000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT6.3_632_30000_0.40707_0.051767_0.1885.png
                gene_name: ACOT6
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
ACOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
ACOX1   10000 perm   2 sec   (5842 perm/sec)   p_kst 8.188000e-01   p_cons 1.779000e-01   p_joint 5.087000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX1.3_2204_10000_0.8188_0.1779_0.5087.png
                gene_name: ACOX1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 64 percent done.
ACP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
Cons ci ratio: 4.659998e-02	ci left: 4.046213e-01	ci right 4.240286e-01	k: 4143	n:10000
KS ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
ACP5   10000 perm   2 sec   (6441 perm/sec)   p_kst 3.990000e-01   p_cons 4.143000e-01   p_joint 6.202000e-01

Outputting figure to mutsig2_images.part000000000002/ACP5.3_994_10000_0.399_0.4143_0.6202.png
                gene_name: ACP5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 65 percent done.
ACP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
Cons ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
KS ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
ACP6   10000 perm   2 sec   (6289 perm/sec)   p_kst 2.508000e-01   p_cons 7.390000e-02   p_joint 1.132000e-01

Joint ci ratio: 5.697197e-02	ci left: 1.859185e-01	ci right 1.968714e-01	k: 3827	n:20000
Cons ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
KS ci ratio: 4.815084e-02	ci left: 2.428699e-01	ci right 2.549032e-01	k: 4977	n:20000
ACP6   20000 perm   4 sec   (5561 perm/sec)   p_kst 2.488500e-01   p_cons 8.140000e-02   p_joint 1.913500e-01

Outputting figure to mutsig2_images.part000000000002/ACP6.3_1327_20000_0.24885_0.0814_0.19135.png
                gene_name: ACP6
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 67 percent done.
ACSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.975457e-02	ci left: 4.830544e-01	ci right 5.027497e-01	k: 4929	n:10000
KS ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
ACSL3   10000 perm   2 sec   (5765 perm/sec)   p_kst 9.430000e-01   p_cons 4.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACSL3.3_2219_10000_0.943_0.4929_1.png
                gene_name: ACSL3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ABL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
Cons ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
ABL1   10000 perm   2 sec   (5622 perm/sec)   p_kst 4.474000e-01   p_cons 4.635000e-01   p_joint 9.920000e-01

Outputting figure to mutsig2_images.part000000000002/ABL1.2_3577_10000_0.4474_0.4635_0.992.png
                gene_name: ABL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 70 percent done.
ABLIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
ABLIM2   10000 perm   2 sec   (5932 perm/sec)   p_kst 1.140000e-02   p_cons 1.741000e-01   p_joint 2.270000e-02

Joint ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
Cons ci ratio: 6.367617e-02	ci left: 1.542037e-01	ci right 1.643956e-01	k: 3185	n:20000
KS ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
ABLIM2   20000 perm   4 sec   (5264 perm/sec)   p_kst 1.180000e-02   p_cons 1.592500e-01   p_joint 6.050000e-03

Joint ci ratio: 7.125634e-02	ci left: 8.835881e-02	ci right 9.492052e-02	k: 2748	n:30000
Cons ci ratio: 5.191414e-02	ci left: 1.555381e-01	ci right 1.638612e-01	k: 4790	n:30000
KS ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
ABLIM2   30000 perm   6 sec   (5022 perm/sec)   p_kst 1.180000e-02   p_cons 1.596667e-01   p_joint 9.160000e-02

Joint ci ratio: 5.504344e-02	ci left: 1.094192e-01	ci right 1.156372e-01	k: 4500	n:40000
Cons ci ratio: 4.494234e-02	ci left: 1.561967e-01	ci right 1.634028e-01	k: 6391	n:40000
KS ci ratio: 1.813164e-01	ci left: 1.050210e-02	ci right 1.261970e-02	k: 461	n:40000
ABLIM2   40000 perm   8 sec   (4860 perm/sec)   p_kst 1.152500e-02   p_cons 1.597750e-01   p_joint 1.125000e-01

Joint ci ratio: 2.595881e-02	ci left: 3.091357e-01	ci right 3.172860e-01	k: 15660	n:50000
Cons ci ratio: 3.865916e-02	ci left: 1.672525e-01	ci right 1.738658e-01	k: 8527	n:50000
KS ci ratio: 1.671502e-01	ci left: 9.970022e-03	ci right 1.180743e-02	k: 543	n:50000
ABLIM2   50000 perm   11 sec   (4730 perm/sec)   p_kst 1.086000e-02   p_cons 1.705400e-01   p_joint 3.132000e-01

Joint ci ratio: 3.861928e-02	ci left: 1.437125e-01	ci right 1.493884e-01	k: 8792	n:60000
Cons ci ratio: 3.534208e-02	ci left: 1.671344e-01	ci right 1.731642e-01	k: 10208	n:60000
KS ci ratio: 1.517430e-01	ci left: 1.016477e-02	ci right 1.184970e-02	k: 659	n:60000
ABLIM2   60000 perm   13 sec   (4617 perm/sec)   p_kst 1.098333e-02   p_cons 1.701333e-01   p_joint 1.465333e-01

Joint ci ratio: 2.149857e-02	ci left: 3.185390e-01	ci right 3.254758e-01	k: 22540	n:70000
Cons ci ratio: 3.278929e-02	ci left: 1.667698e-01	ci right 1.723434e-01	k: 11868	n:70000
KS ci ratio: 1.402110e-01	ci left: 1.026809e-02	ci right 1.182998e-02	k: 772	n:70000
ABLIM2   70000 perm   15 sec   (4523 perm/sec)   p_kst 1.102857e-02   p_cons 1.695429e-01   p_joint 3.220000e-01

Joint ci ratio: 2.121269e-02	ci left: 2.959782e-01	ci right 3.023364e-01	k: 23932	n:80000
Cons ci ratio: 3.064381e-02	ci left: 1.672040e-01	ci right 1.724199e-01	k: 13584	n:80000
KS ci ratio: 1.314891e-01	ci left: 1.026457e-02	ci right 1.172122e-02	k: 878	n:80000
ABLIM2   80000 perm   18 sec   (4427 perm/sec)   p_kst 1.097500e-02   p_cons 1.698000e-01   p_joint 2.991500e-01

Joint ci ratio: 3.135520e-02	ci left: 1.456417e-01	ci right 1.502921e-01	k: 13316	n:90000
Cons ci ratio: 2.881650e-02	ci left: 1.680813e-01	ci right 1.730066e-01	k: 15348	n:90000
KS ci ratio: 1.255760e-01	ci left: 1.003808e-02	ci right 1.139374e-02	k: 963	n:90000
ABLIM2   90000 perm   21 sec   (4343 perm/sec)   p_kst 1.070000e-02   p_cons 1.705333e-01   p_joint 1.479556e-01

Joint ci ratio: 2.989412e-02	ci left: 1.445223e-01	ci right 1.489182e-01	k: 14671	n:100000
Cons ci ratio: 2.733044e-02	ci left: 1.682831e-01	ci right 1.729560e-01	k: 17061	n:100000
KS ci ratio: 1.201631e-01	ci left: 9.896875e-03	ci right 1.117175e-02	k: 1052	n:100000
ABLIM2   100000 perm   23 sec   (4268 perm/sec)   p_kst 1.052000e-02   p_cons 1.706100e-01   p_joint 1.467100e-01

Joint ci ratio: 2.855396e-02	ci left: 1.441802e-01	ci right 1.483658e-01	k: 16089	n:110000
Cons ci ratio: 2.608470e-02	ci left: 1.681099e-01	ci right 1.725620e-01	k: 18736	n:110000
KS ci ratio: 1.140892e-01	ci left: 1.001203e-02	ci right 1.123216e-02	k: 1167	n:110000
ABLIM2   110000 perm   26 sec   (4196 perm/sec)   p_kst 1.060909e-02   p_cons 1.703273e-01   p_joint 1.462636e-01

Joint ci ratio: 2.761042e-02	ci left: 1.418275e-01	ci right 1.458064e-01	k: 17257	n:120000
Cons ci ratio: 2.500988e-02	ci left: 1.678039e-01	ci right 1.720621e-01	k: 20391	n:120000
KS ci ratio: 1.086383e-01	ci left: 1.014989e-02	ci right 1.132394e-02	k: 1287	n:120000
ABLIM2   120000 perm   29 sec   (4120 perm/sec)   p_kst 1.072500e-02   p_cons 1.699250e-01   p_joint 1.438083e-01

Joint ci ratio: 2.625003e-02	ci left: 1.444977e-01	ci right 1.483488e-01	k: 19034	n:130000
Cons ci ratio: 2.401061e-02	ci left: 1.680994e-01	ci right 1.721922e-01	k: 22118	n:130000
KS ci ratio: 1.044268e-01	ci left: 1.016279e-02	ci right 1.128996e-02	k: 1393	n:130000
ABLIM2   130000 perm   32 sec   (4052 perm/sec)   p_kst 1.071538e-02   p_cons 1.701385e-01   p_joint 1.464154e-01

Joint ci ratio: 6.125430e-02	ci left: 2.755014e-02	ci right 2.929803e-02	k: 3978	n:140000
Cons ci ratio: 2.311818e-02	ci left: 1.684053e-01	ci right 1.723512e-01	k: 23852	n:140000
KS ci ratio: 1.010108e-01	ci left: 1.010496e-02	ci right 1.118688e-02	k: 1489	n:140000
ABLIM2   140000 perm   35 sec   (3989 perm/sec)   p_kst 1.063571e-02   p_cons 1.703714e-01   p_joint 2.841429e-02

Joint ci ratio: 6.172962e-02	ci left: 2.537124e-02	ci right 2.699381e-02	k: 3926	n:150000
Cons ci ratio: 2.234840e-02	ci left: 1.682946e-01	ci right 1.721048e-01	k: 25529	n:150000
KS ci ratio: 9.819147e-02	ci left: 9.996822e-03	ci right 1.103556e-02	k: 1576	n:150000
ABLIM2   150000 perm   38 sec   (3926 perm/sec)   p_kst 1.050667e-02   p_cons 1.701933e-01   p_joint 2.617333e-02

Outputting figure to mutsig2_images.part000000000002/ABLIM2.2_2076_150000_0.010507_0.17019_0.026173.png
                gene_name: ABLIM2
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 71 percent done.
ABO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289056e-03	ci left: 9.953687e-01	ci right 9.977274e-01	k: 9967	n:10000
KS ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
ABO   10000 perm   2 sec   (6578 perm/sec)   p_kst 7.846000e-01   p_cons 9.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABO.2_1092_10000_0.7846_0.9967_1.png
                gene_name: ABO
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ABR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
Cons ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
KS ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
ABR   10000 perm   2 sec   (5854 perm/sec)   p_kst 6.416000e-01   p_cons 5.141000e-01   p_joint 8.851000e-01

Outputting figure to mutsig2_images.part000000000002/ABR.2_2811_10000_0.6416_0.5141_0.8851.png
                gene_name: ABR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 74 percent done.
ABTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
KS ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
ABTB1   10000 perm   2 sec   (6607 perm/sec)   p_kst 7.500000e-01   p_cons 4.380000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABTB1.2_1485_10000_0.75_0.438_1.png
                gene_name: ABTB1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ABTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
Cons ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
ABTB2   10000 perm   2 sec   (5902 perm/sec)   p_kst 3.408000e-01   p_cons 1.035000e-01   p_joint 3.277000e-01

Joint ci ratio: 4.927785e-02	ci left: 2.343916e-01	ci right 2.462840e-01	k: 4806	n:20000
Cons ci ratio: 8.190841e-02	ci left: 9.852583e-02	ci right 1.069901e-01	k: 2054	n:20000
KS ci ratio: 3.839659e-02	ci left: 3.359713e-01	ci right 3.491745e-01	k: 6851	n:20000
ABTB2   20000 perm   4 sec   (5223 perm/sec)   p_kst 3.425500e-01   p_cons 1.027000e-01   p_joint 2.403000e-01

Outputting figure to mutsig2_images.part000000000002/ABTB2.2_2588_20000_0.34255_0.1027_0.2403.png
                gene_name: ABTB2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 77 percent done.
ACBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
KS ci ratio: 1.082099e-01	ci left: 1.096886e-01	ci right 1.223361e-01	k: 1159	n:10000
ACBD4   10000 perm   2 sec   (6501 perm/sec)   p_kst 1.159000e-01   p_cons 8.546000e-01   p_joint 1

Joint ci ratio: 8.316211e-03	ci left: 9.135500e-01	ci right 9.212281e-01	k: 18349	n:20000
Cons ci ratio: 1.159231e-02	ci left: 8.461410e-01	ci right 8.560567e-01	k: 17023	n:20000
KS ci ratio: 7.710129e-02	ci left: 1.100200e-01	ci right 1.188924e-01	k: 2288	n:20000
ACBD4   20000 perm   4 sec   (5699 perm/sec)   p_kst 1.144000e-01   p_cons 8.511500e-01   p_joint 9.174500e-01

Outputting figure to mutsig2_images.part000000000002/ACBD4.2_1094_20000_0.1144_0.85115_0.91745.png
                gene_name: ACBD4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 79 percent done.
ACBD7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
ACER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.495430e-02	ci left: 7.026103e-01	ci right 7.204663e-01	k: 7116	n:10000
KS ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
ACER1   10000 perm   1 sec   (6778 perm/sec)   p_kst 9.012000e-01   p_cons 7.116000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACER1.2_819_10000_0.9012_0.7116_1.png
                gene_name: ACER1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ACER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
Cons ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
KS ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
ACER2   10000 perm   1 sec   (6739 perm/sec)   p_kst 1.935000e-01   p_cons 8.676000e-01   p_joint 9.452000e-01

Outputting figure to mutsig2_images.part000000000002/ACER2.2_852_10000_0.1935_0.8676_0.9452.png
                gene_name: ACER2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 83 percent done.
ACLY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
Cons ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
KS ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
ACLY   10000 perm   2 sec   (5528 perm/sec)   p_kst 3.973000e-01   p_cons 5.314000e-01   p_joint 7.614000e-01

Outputting figure to mutsig2_images.part000000000002/ACLY.2_3418_10000_0.3973_0.5314_0.7614.png
                gene_name: ACLY
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 85 percent done.
ACMSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
Cons ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
ACMSD   10000 perm   2 sec   (6606 perm/sec)   p_kst 1.500000e-03   p_cons 1.177000e-01   p_joint 1.500000e-03

Joint ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
Cons ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
KS ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
ACMSD   20000 perm   3 sec   (5790 perm/sec)   p_kst 1.600000e-03   p_cons 1.168000e-01   p_joint 1.600000e-03

Joint ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
Cons ci ratio: 6.251723e-02	ci left: 1.122326e-01	ci right 1.195086e-01	k: 3475	n:30000
KS ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
ACMSD   30000 perm   5 sec   (5522 perm/sec)   p_kst 1.466667e-03   p_cons 1.158333e-01   p_joint 1.466667e-03

Joint ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
Cons ci ratio: 5.431192e-02	ci left: 1.120868e-01	ci right 1.183692e-01	k: 4608	n:40000
KS ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
ACMSD   40000 perm   8 sec   (5316 perm/sec)   p_kst 1.550000e-03   p_cons 1.152000e-01   p_joint 1.550000e-03

Joint ci ratio: 4.406815e-01	ci left: 1.233305e-03	ci right 1.946574e-03	k: 78	n:50000
Cons ci ratio: 4.872763e-02	ci left: 1.118006e-01	ci right 1.174043e-01	k: 5729	n:50000
KS ci ratio: 4.406815e-01	ci left: 1.233305e-03	ci right 1.946574e-03	k: 78	n:50000
ACMSD   50000 perm   10 sec   (5171 perm/sec)   p_kst 1.560000e-03   p_cons 1.145800e-01   p_joint 1.560000e-03

Joint ci ratio: 3.878046e-01	ci left: 1.371305e-03	ci right 2.045032e-03	k: 101	n:60000
Cons ci ratio: 4.458468e-02	ci left: 1.115829e-01	ci right 1.166878e-01	k: 6847	n:60000
KS ci ratio: 3.878046e-01	ci left: 1.371305e-03	ci right 2.045032e-03	k: 101	n:60000
ACMSD   60000 perm   12 sec   (5044 perm/sec)   p_kst 1.683333e-03   p_cons 1.141167e-01   p_joint 1.683333e-03

Joint ci ratio: 3.605584e-01	ci left: 1.382507e-03	ci right 2.002831e-03	k: 117	n:70000
Cons ci ratio: 4.140429e-02	ci left: 1.111591e-01	ci right 1.158730e-01	k: 7945	n:70000
KS ci ratio: 3.605584e-01	ci left: 1.382507e-03	ci right 2.002831e-03	k: 117	n:70000
ACMSD   70000 perm   14 sec   (4936 perm/sec)   p_kst 1.671429e-03   p_cons 1.135000e-01   p_joint 1.671429e-03

Joint ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
Cons ci ratio: 3.874498e-02	ci left: 1.112354e-01	ci right 1.156427e-01	k: 9074	n:80000
KS ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
ACMSD   80000 perm   17 sec   (4824 perm/sec)   p_kst 1.637500e-03   p_cons 1.134250e-01   p_joint 1.637500e-03

Joint ci ratio: 3.252741e-01	ci left: 1.349511e-03	ci right 1.883438e-03	k: 144	n:90000
Cons ci ratio: 3.651779e-02	ci left: 1.114235e-01	ci right 1.155792e-01	k: 10214	n:90000
KS ci ratio: 3.252741e-01	ci left: 1.349511e-03	ci right 1.883438e-03	k: 144	n:90000
ACMSD   90000 perm   19 sec   (4723 perm/sec)   p_kst 1.600000e-03   p_cons 1.134889e-01   p_joint 1.600000e-03

Joint ci ratio: 3.126028e-01	ci left: 1.324954e-03	ci right 1.824671e-03	k: 156	n:100000
Cons ci ratio: 3.459057e-02	ci left: 1.118379e-01	ci right 1.157845e-01	k: 11380	n:100000
KS ci ratio: 3.126028e-01	ci left: 1.324954e-03	ci right 1.824671e-03	k: 156	n:100000
ACMSD   100000 perm   22 sec   (4623 perm/sec)   p_kst 1.560000e-03   p_cons 1.138000e-01   p_joint 1.560000e-03

Joint ci ratio: 2.960870e-01	ci left: 1.355657e-03	ci right 1.834874e-03	k: 174	n:110000
Cons ci ratio: 3.304206e-02	ci left: 1.115589e-01	ci right 1.153160e-01	k: 12477	n:110000
KS ci ratio: 2.960870e-01	ci left: 1.355657e-03	ci right 1.834874e-03	k: 174	n:110000
ACMSD   110000 perm   24 sec   (4536 perm/sec)   p_kst 1.581818e-03   p_cons 1.134273e-01   p_joint 1.581818e-03

Joint ci ratio: 2.790579e-01	ci left: 1.412813e-03	ci right 1.878469e-03	k: 196	n:120000
Cons ci ratio: 3.159528e-02	ci left: 1.118925e-01	ci right 1.154928e-01	k: 13642	n:120000
KS ci ratio: 2.790579e-01	ci left: 1.412813e-03	ci right 1.878469e-03	k: 196	n:120000
ACMSD   120000 perm   27 sec   (4446 perm/sec)   p_kst 1.633333e-03   p_cons 1.136833e-01   p_joint 1.633333e-03

Joint ci ratio: 2.683728e-01	ci left: 1.418769e-03	ci right 1.865472e-03	k: 212	n:130000
Cons ci ratio: 3.045106e-02	ci left: 1.113373e-01	ci right 1.147877e-01	k: 14697	n:130000
KS ci ratio: 2.683728e-01	ci left: 1.418769e-03	ci right 1.865472e-03	k: 212	n:130000
ACMSD   130000 perm   30 sec   (4366 perm/sec)   p_kst 1.630769e-03   p_cons 1.130538e-01   p_joint 1.630769e-03

Joint ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
Cons ci ratio: 2.933045e-02	ci left: 1.114880e-01	ci right 1.148137e-01	k: 15840	n:140000
KS ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
ACMSD   140000 perm   33 sec   (4293 perm/sec)   p_kst 1.678571e-03   p_cons 1.131429e-01   p_joint 1.678571e-03

Joint ci ratio: 2.477151e-01	ci left: 1.460341e-03	ci right 1.879299e-03	k: 249	n:150000
Cons ci ratio: 2.835805e-02	ci left: 1.113888e-01	ci right 1.145996e-01	k: 16948	n:150000
KS ci ratio: 2.477151e-01	ci left: 1.460341e-03	ci right 1.879299e-03	k: 249	n:150000
ACMSD   150000 perm   36 sec   (4219 perm/sec)   p_kst 1.660000e-03   p_cons 1.129867e-01   p_joint 1.660000e-03

Joint ci ratio: 2.392507e-01	ci left: 1.474709e-03	ci right 1.881190e-03	k: 267	n:160000
Cons ci ratio: 2.748494e-02	ci left: 1.112414e-01	ci right 1.143476e-01	k: 18046	n:160000
KS ci ratio: 2.392507e-01	ci left: 1.474709e-03	ci right 1.881190e-03	k: 267	n:160000
ACMSD   160000 perm   39 sec   (4150 perm/sec)   p_kst 1.668750e-03   p_cons 1.127875e-01   p_joint 1.668750e-03

Joint ci ratio: 2.299932e-01	ci left: 1.509772e-03	ci right 1.907530e-03	k: 289	n:170000
Cons ci ratio: 2.670274e-02	ci left: 1.110016e-01	ci right 1.140116e-01	k: 19125	n:170000
KS ci ratio: 2.299932e-01	ci left: 1.509772e-03	ci right 1.907530e-03	k: 289	n:170000
ACMSD   170000 perm   42 sec   (4085 perm/sec)   p_kst 1.700000e-03   p_cons 1.125000e-01   p_joint 1.700000e-03

Joint ci ratio: 2.213782e-01	ci left: 1.546456e-03	ci right 1.936539e-03	k: 312	n:180000
Cons ci ratio: 2.596344e-02	ci left: 1.109443e-01	ci right 1.138682e-01	k: 20232	n:180000
KS ci ratio: 2.213782e-01	ci left: 1.546456e-03	ci right 1.936539e-03	k: 312	n:180000
ACMSD   180000 perm   45 sec   (4018 perm/sec)   p_kst 1.733333e-03   p_cons 1.124000e-01   p_joint 1.733333e-03

Joint ci ratio: 2.172559e-01	ci left: 1.524750e-03	ci right 1.901241e-03	k: 324	n:190000
Cons ci ratio: 2.529503e-02	ci left: 1.107946e-01	ci right 1.136383e-01	k: 21320	n:190000
KS ci ratio: 2.172559e-01	ci left: 1.524750e-03	ci right 1.901241e-03	k: 324	n:190000
ACMSD   190000 perm   48 sec   (3957 perm/sec)   p_kst 1.705263e-03   p_cons 1.122105e-01   p_joint 1.705263e-03

Joint ci ratio: 2.099506e-01	ci left: 1.557365e-03	ci right 1.927316e-03	k: 347	n:200000
Cons ci ratio: 2.466393e-02	ci left: 1.107553e-01	ci right 1.135260e-01	k: 22427	n:200000
KS ci ratio: 2.099506e-01	ci left: 1.557365e-03	ci right 1.927316e-03	k: 347	n:200000
ACMSD   200000 perm   51 sec   (3898 perm/sec)   p_kst 1.735000e-03   p_cons 1.121350e-01   p_joint 1.735000e-03

Joint ci ratio: 2.036110e-01	ci left: 1.582545e-03	ci right 1.945715e-03	k: 369	n:210000
Cons ci ratio: 2.405251e-02	ci left: 1.109289e-01	ci right 1.136342e-01	k: 23578	n:210000
KS ci ratio: 2.036110e-01	ci left: 1.582545e-03	ci right 1.945715e-03	k: 369	n:210000
ACMSD   210000 perm   55 sec   (3840 perm/sec)   p_kst 1.757143e-03   p_cons 1.122762e-01   p_joint 1.757143e-03

Joint ci ratio: 1.975607e-01	ci left: 1.609909e-03	ci right 1.967059e-03	k: 392	n:220000
Cons ci ratio: 2.351442e-02	ci left: 1.108343e-01	ci right 1.134760e-01	k: 24673	n:220000
KS ci ratio: 1.975607e-01	ci left: 1.609909e-03	ci right 1.967059e-03	k: 392	n:220000
ACMSD   220000 perm   58 sec   (3783 perm/sec)   p_kst 1.781818e-03   p_cons 1.121500e-01   p_joint 1.781818e-03

Joint ci ratio: 1.938963e-01	ci left: 1.601934e-03	ci right 1.949945e-03	k: 407	n:230000
Cons ci ratio: 2.297927e-02	ci left: 1.110210e-01	ci right 1.136062e-01	k: 25831	n:230000
KS ci ratio: 1.938963e-01	ci left: 1.601934e-03	ci right 1.949945e-03	k: 407	n:230000
ACMSD   230000 perm   62 sec   (3727 perm/sec)   p_kst 1.769565e-03   p_cons 1.123087e-01   p_joint 1.769565e-03

Joint ci ratio: 1.899791e-01	ci left: 1.602617e-03	ci right 1.942930e-03	k: 424	n:240000
Cons ci ratio: 2.251527e-02	ci left: 1.108736e-01	ci right 1.134025e-01	k: 26912	n:240000
KS ci ratio: 1.899791e-01	ci left: 1.602617e-03	ci right 1.942930e-03	k: 424	n:240000
ACMSD   240000 perm   65 sec   (3675 perm/sec)   p_kst 1.766667e-03   p_cons 1.121333e-01   p_joint 1.766667e-03

Joint ci ratio: 1.856600e-01	ci left: 1.614752e-03	ci right 1.948969e-03	k: 444	n:250000
Cons ci ratio: 2.206630e-02	ci left: 1.108459e-01	ci right 1.133231e-01	k: 28020	n:250000
KS ci ratio: 1.856600e-01	ci left: 1.614752e-03	ci right 1.948969e-03	k: 444	n:250000
ACMSD   250000 perm   69 sec   (3625 perm/sec)   p_kst 1.776000e-03   p_cons 1.120800e-01   p_joint 1.776000e-03

Joint ci ratio: 1.822125e-01	ci left: 1.615020e-03	ci right 1.942400e-03	k: 461	n:260000
Cons ci ratio: 2.162895e-02	ci left: 1.109510e-01	ci right 1.133808e-01	k: 29162	n:260000
KS ci ratio: 1.822125e-01	ci left: 1.615020e-03	ci right 1.942400e-03	k: 461	n:260000
ACMSD   260000 perm   73 sec   (3576 perm/sec)   p_kst 1.773077e-03   p_cons 1.121615e-01   p_joint 1.773077e-03

Joint ci ratio: 1.776544e-01	ci left: 1.640092e-03	ci right 1.963345e-03	k: 485	n:270000
Cons ci ratio: 2.121621e-02	ci left: 1.110524e-01	ci right 1.134374e-01	k: 30305	n:270000
KS ci ratio: 1.776544e-01	ci left: 1.640092e-03	ci right 1.963345e-03	k: 485	n:270000
ACMSD   270000 perm   76 sec   (3531 perm/sec)   p_kst 1.796296e-03   p_cons 1.122407e-01   p_joint 1.796296e-03

Joint ci ratio: 1.755028e-01	ci left: 1.622479e-03	ci right 1.937976e-03	k: 497	n:280000
Cons ci ratio: 2.084416e-02	ci left: 1.109763e-01	ci right 1.133174e-01	k: 31400	n:280000
KS ci ratio: 1.755028e-01	ci left: 1.622479e-03	ci right 1.937976e-03	k: 497	n:280000
ACMSD   280000 perm   80 sec   (3486 perm/sec)   p_kst 1.775000e-03   p_cons 1.121429e-01   p_joint 1.775000e-03

Joint ci ratio: 1.734275e-01	ci left: 1.606103e-03	ci right 1.914336e-03	k: 509	n:290000
Cons ci ratio: 2.048321e-02	ci left: 1.109814e-01	ci right 1.132816e-01	k: 32517	n:290000
KS ci ratio: 1.734275e-01	ci left: 1.606103e-03	ci right 1.914336e-03	k: 509	n:290000
ACMSD   290000 perm   84 sec   (3441 perm/sec)   p_kst 1.755172e-03   p_cons 1.121276e-01   p_joint 1.755172e-03

Joint ci ratio: 1.702842e-01	ci left: 1.613176e-03	ci right 1.916579e-03	k: 528	n:300000
Cons ci ratio: 2.014814e-02	ci left: 1.109101e-01	ci right 1.131707e-01	k: 33611	n:300000
KS ci ratio: 1.702842e-01	ci left: 1.613176e-03	ci right 1.916579e-03	k: 528	n:300000
ACMSD   300000 perm   88 sec   (3402 perm/sec)   p_kst 1.760000e-03   p_cons 1.120367e-01   p_joint 1.760000e-03

Joint ci ratio: 1.670007e-01	ci left: 1.626022e-03	ci right 1.925351e-03	k: 549	n:310000
Cons ci ratio: 1.982643e-02	ci left: 1.108694e-01	ci right 1.130927e-01	k: 34713	n:310000
KS ci ratio: 1.670007e-01	ci left: 1.626022e-03	ci right 1.925351e-03	k: 549	n:310000
ACMSD   310000 perm   92 sec   (3361 perm/sec)   p_kst 1.770968e-03   p_cons 1.119774e-01   p_joint 1.770968e-03

Joint ci ratio: 1.644784e-01	ci left: 1.626130e-03	ci right 1.920510e-03	k: 566	n:320000
Cons ci ratio: 1.951044e-02	ci left: 1.109248e-01	ci right 1.131134e-01	k: 35845	n:320000
KS ci ratio: 1.644784e-01	ci left: 1.626130e-03	ci right 1.920510e-03	k: 566	n:320000
ACMSD   320000 perm   96 sec   (3320 perm/sec)   p_kst 1.768750e-03   p_cons 1.120156e-01   p_joint 1.768750e-03

Joint ci ratio: 1.624855e-01	ci left: 1.617541e-03	ci right 1.906472e-03	k: 580	n:330000
Cons ci ratio: 1.922403e-02	ci left: 1.108233e-01	ci right 1.129774e-01	k: 36926	n:330000
KS ci ratio: 1.624855e-01	ci left: 1.617541e-03	ci right 1.906472e-03	k: 580	n:330000
ACMSD   330000 perm   101 sec   (3275 perm/sec)   p_kst 1.757576e-03   p_cons 1.118970e-01   p_joint 1.757576e-03

Joint ci ratio: 1.592286e-01	ci left: 1.637715e-03	ci right 1.923825e-03	k: 604	n:340000
Cons ci ratio: 1.895072e-02	ci left: 1.107192e-01	ci right 1.128404e-01	k: 38004	n:340000
KS ci ratio: 1.592286e-01	ci left: 1.637715e-03	ci right 1.923825e-03	k: 604	n:340000
ACMSD   340000 perm   105 sec   (3241 perm/sec)   p_kst 1.776471e-03   p_cons 1.117765e-01   p_joint 1.776471e-03

Joint ci ratio: 1.569114e-01	ci left: 1.640317e-03	ci right 1.922320e-03	k: 622	n:350000
Cons ci ratio: 1.867636e-02	ci left: 1.107521e-01	ci right 1.128429e-01	k: 39128	n:350000
KS ci ratio: 1.569114e-01	ci left: 1.640317e-03	ci right 1.922320e-03	k: 622	n:350000
ACMSD   350000 perm   109 sec   (3207 perm/sec)   p_kst 1.777143e-03   p_cons 1.117943e-01   p_joint 1.777143e-03

Joint ci ratio: 1.550565e-01	ci left: 1.634793e-03	ci right 1.912214e-03	k: 637	n:360000
Cons ci ratio: 1.841823e-02	ci left: 1.107336e-01	ci right 1.127948e-01	k: 40234	n:360000
KS ci ratio: 1.550565e-01	ci left: 1.634793e-03	ci right 1.912214e-03	k: 637	n:360000
ACMSD   360000 perm   113 sec   (3173 perm/sec)   p_kst 1.769444e-03   p_cons 1.117611e-01   p_joint 1.769444e-03

Joint ci ratio: 1.537382e-01	ci left: 1.619189e-03	ci right 1.891411e-03	k: 648	n:370000
Cons ci ratio: 1.816012e-02	ci left: 1.108294e-01	ci right 1.128632e-01	k: 41382	n:370000
KS ci ratio: 1.537382e-01	ci left: 1.619189e-03	ci right 1.891411e-03	k: 648	n:370000
ACMSD   370000 perm   118 sec   (3138 perm/sec)   p_kst 1.751351e-03   p_cons 1.118432e-01   p_joint 1.751351e-03

Joint ci ratio: 1.521071e-01	ci left: 1.612011e-03	ci right 1.879889e-03	k: 662	n:380000
Cons ci ratio: 1.792206e-02	ci left: 1.108155e-01	ci right 1.128220e-01	k: 42490	n:380000
KS ci ratio: 1.521071e-01	ci left: 1.612011e-03	ci right 1.879889e-03	k: 662	n:380000
ACMSD   380000 perm   122 sec   (3106 perm/sec)   p_kst 1.742105e-03   p_cons 1.118158e-01   p_joint 1.742105e-03

Joint ci ratio: 1.506383e-01	ci left: 1.602748e-03	ci right 1.866282e-03	k: 675	n:390000
Cons ci ratio: 1.771509e-02	ci left: 1.105572e-01	ci right 1.125358e-01	k: 43502	n:390000
KS ci ratio: 1.506383e-01	ci left: 1.602748e-03	ci right 1.866282e-03	k: 675	n:390000
ACMSD   390000 perm   127 sec   (3074 perm/sec)   p_kst 1.730769e-03   p_cons 1.115436e-01   p_joint 1.730769e-03

Joint ci ratio: 1.494287e-01	ci left: 1.589146e-03	ci right 1.848158e-03	k: 686	n:400000
Cons ci ratio: 1.749169e-02	ci left: 1.105760e-01	ci right 1.125297e-01	k: 44620	n:400000
KS ci ratio: 1.494287e-01	ci left: 1.589146e-03	ci right 1.848158e-03	k: 686	n:400000
ACMSD   400000 perm   132 sec   (3042 perm/sec)   p_kst 1.715000e-03   p_cons 1.115500e-01   p_joint 1.715000e-03

Joint ci ratio: 1.470912e-01	ci left: 1.602055e-03	ci right 1.858728e-03	k: 708	n:410000
Cons ci ratio: 1.727760e-02	ci left: 1.105818e-01	ci right 1.125115e-01	k: 45733	n:410000
KS ci ratio: 1.470912e-01	ci left: 1.602055e-03	ci right 1.858728e-03	k: 708	n:410000
ACMSD   410000 perm   136 sec   (3010 perm/sec)   p_kst 1.726829e-03   p_cons 1.115439e-01   p_joint 1.726829e-03

Joint ci ratio: 1.459643e-01	ci left: 1.589140e-03	ci right 1.841623e-03	k: 719	n:420000
Cons ci ratio: 1.708494e-02	ci left: 1.104286e-01	ci right 1.123339e-01	k: 46779	n:420000
KS ci ratio: 1.459643e-01	ci left: 1.589140e-03	ci right 1.841623e-03	k: 719	n:420000
ACMSD   420000 perm   141 sec   (2979 perm/sec)   p_kst 1.711905e-03   p_cons 1.113786e-01   p_joint 1.711905e-03

Joint ci ratio: 1.445661e-01	ci left: 1.583558e-03	ci right 1.832536e-03	k: 733	n:430000
Cons ci ratio: 1.688428e-02	ci left: 1.104495e-01	ci right 1.123325e-01	k: 47897	n:430000
KS ci ratio: 1.445661e-01	ci left: 1.583558e-03	ci right 1.832536e-03	k: 733	n:430000
ACMSD   430000 perm   146 sec   (2949 perm/sec)   p_kst 1.704651e-03   p_cons 1.113884e-01   p_joint 1.704651e-03

Joint ci ratio: 1.430160e-01	ci left: 1.582623e-03	ci right 1.828558e-03	k: 749	n:440000
Cons ci ratio: 1.669301e-02	ci left: 1.104401e-01	ci right 1.123014e-01	k: 49002	n:440000
KS ci ratio: 1.430160e-01	ci left: 1.582623e-03	ci right 1.828558e-03	k: 749	n:440000
ACMSD   440000 perm   151 sec   (2920 perm/sec)   p_kst 1.702273e-03   p_cons 1.113682e-01   p_joint 1.702273e-03

Joint ci ratio: 1.417000e-01	ci left: 1.577457e-03	ci right 1.820143e-03	k: 763	n:450000
Cons ci ratio: 1.650366e-02	ci left: 1.104843e-01	ci right 1.123251e-01	k: 50131	n:450000
KS ci ratio: 1.417000e-01	ci left: 1.577457e-03	ci right 1.820143e-03	k: 763	n:450000
ACMSD   450000 perm   156 sec   (2890 perm/sec)   p_kst 1.695556e-03   p_cons 1.114022e-01   p_joint 1.695556e-03

Joint ci ratio: 1.400596e-01	ci left: 1.580915e-03	ci right 1.821083e-03	k: 781	n:460000
Cons ci ratio: 1.631559e-02	ci left: 1.105875e-01	ci right 1.124087e-01	k: 51288	n:460000
KS ci ratio: 1.400596e-01	ci left: 1.580915e-03	ci right 1.821083e-03	k: 781	n:460000
ACMSD   460000 perm   161 sec   (2861 perm/sec)   p_kst 1.697826e-03   p_cons 1.114957e-01   p_joint 1.697826e-03

Joint ci ratio: 1.382154e-01	ci left: 1.590405e-03	ci right 1.828571e-03	k: 802	n:470000
Cons ci ratio: 1.613571e-02	ci left: 1.106630e-01	ci right 1.124652e-01	k: 52434	n:470000
KS ci ratio: 1.382154e-01	ci left: 1.590405e-03	ci right 1.828571e-03	k: 802	n:470000
ACMSD   470000 perm   166 sec   (2833 perm/sec)   p_kst 1.706383e-03   p_cons 1.115617e-01   p_joint 1.706383e-03

Joint ci ratio: 1.363594e-01	ci left: 1.601531e-03	ci right 1.837882e-03	k: 824	n:480000
Cons ci ratio: 1.595629e-02	ci left: 1.108019e-01	ci right 1.125861e-01	k: 53612	n:480000
KS ci ratio: 1.363594e-01	ci left: 1.601531e-03	ci right 1.837882e-03	k: 824	n:480000
ACMSD   480000 perm   171 sec   (2805 perm/sec)   p_kst 1.716667e-03   p_cons 1.116917e-01   p_joint 1.716667e-03

Joint ci ratio: 1.352982e-01	ci left: 1.594476e-03	ci right 1.827806e-03	k: 837	n:490000
Cons ci ratio: 1.579457e-02	ci left: 1.107868e-01	ci right 1.125525e-01	k: 54717	n:490000
KS ci ratio: 1.352982e-01	ci left: 1.594476e-03	ci right 1.827806e-03	k: 837	n:490000
ACMSD   490000 perm   176 sec   (2778 perm/sec)   p_kst 1.708163e-03   p_cons 1.116673e-01   p_joint 1.708163e-03

Joint ci ratio: 1.341824e-01	ci left: 1.589642e-03	ci right 1.820194e-03	k: 851	n:500000
Cons ci ratio: 1.562681e-02	ci left: 1.109099e-01	ci right 1.126586e-01	k: 55891	n:500000
KS ci ratio: 1.341824e-01	ci left: 1.589642e-03	ci right 1.820194e-03	k: 851	n:500000
ACMSD   500000 perm   182 sec   (2751 perm/sec)   p_kst 1.702000e-03   p_cons 1.117820e-01   p_joint 1.702000e-03

Joint ci ratio: 1.330168e-01	ci left: 1.586901e-03	ci right 1.814898e-03	k: 866	n:510000
Cons ci ratio: 1.547038e-02	ci left: 1.109501e-01	ci right 1.126818e-01	k: 57025	n:510000
KS ci ratio: 1.330168e-01	ci left: 1.586901e-03	ci right 1.814898e-03	k: 866	n:510000
ACMSD   510000 perm   187 sec   (2724 perm/sec)   p_kst 1.698039e-03   p_cons 1.118137e-01   p_joint 1.698039e-03

Joint ci ratio: 1.323328e-01	ci left: 1.573116e-03	ci right 1.797879e-03	k: 875	n:520000
Cons ci ratio: 1.532092e-02	ci left: 1.109581e-01	ci right 1.126731e-01	k: 58143	n:520000
KS ci ratio: 1.323328e-01	ci left: 1.573116e-03	ci right 1.797879e-03	k: 875	n:520000
ACMSD   520000 perm   193 sec   (2698 perm/sec)   p_kst 1.682692e-03   p_cons 1.118135e-01   p_joint 1.682692e-03

Joint ci ratio: 1.311407e-01	ci left: 1.572629e-03	ci right 1.795140e-03	k: 891	n:530000
Cons ci ratio: 1.517500e-02	ci left: 1.109754e-01	ci right 1.126742e-01	k: 59266	n:530000
KS ci ratio: 1.311407e-01	ci left: 1.572629e-03	ci right 1.795140e-03	k: 891	n:530000
ACMSD   530000 perm   198 sec   (2673 perm/sec)   p_kst 1.681132e-03   p_cons 1.118226e-01   p_joint 1.681132e-03

Joint ci ratio: 1.304125e-01	ci left: 1.561418e-03	ci right 1.781021e-03	k: 901	n:540000
Cons ci ratio: 1.504411e-02	ci left: 1.108481e-01	ci right 1.125302e-01	k: 60311	n:540000
KS ci ratio: 1.304125e-01	ci left: 1.561418e-03	ci right 1.781021e-03	k: 901	n:540000
ACMSD   540000 perm   204 sec   (2645 perm/sec)   p_kst 1.668519e-03   p_cons 1.116870e-01   p_joint 1.668519e-03

Joint ci ratio: 1.296964e-01	ci left: 1.550618e-03	ci right 1.767413e-03	k: 911	n:550000
Cons ci ratio: 1.491285e-02	ci left: 1.107744e-01	ci right 1.124406e-01	k: 61383	n:550000
KS ci ratio: 1.296964e-01	ci left: 1.550618e-03	ci right 1.767413e-03	k: 911	n:550000
ACMSD   550000 perm   210 sec   (2619 perm/sec)   p_kst 1.656364e-03   p_cons 1.116055e-01   p_joint 1.656364e-03

Joint ci ratio: 1.282969e-01	ci left: 1.557491e-03	ci right 1.772717e-03	k: 931	n:560000
Cons ci ratio: 1.477938e-02	ci left: 1.107782e-01	ci right 1.124294e-01	k: 62497	n:560000
KS ci ratio: 1.282969e-01	ci left: 1.557491e-03	ci right 1.772717e-03	k: 931	n:560000
ACMSD   560000 perm   216 sec   (2595 perm/sec)   p_kst 1.662500e-03   p_cons 1.116018e-01   p_joint 1.662500e-03

Joint ci ratio: 1.271425e-01	ci left: 1.559038e-03	ci right 1.772394e-03	k: 948	n:570000
Cons ci ratio: 1.464800e-02	ci left: 1.108012e-01	ci right 1.124379e-01	k: 63622	n:570000
KS ci ratio: 1.271425e-01	ci left: 1.559038e-03	ci right 1.772394e-03	k: 948	n:570000
ACMSD   570000 perm   222 sec   (2572 perm/sec)   p_kst 1.663158e-03   p_cons 1.116175e-01   p_joint 1.663158e-03

Joint ci ratio: 1.253061e-01	ci left: 1.578911e-03	ci right 1.791634e-03	k: 976	n:580000
Cons ci ratio: 1.451073e-02	ci left: 1.109506e-01	ci right 1.125740e-01	k: 64821	n:580000
KS ci ratio: 1.253061e-01	ci left: 1.578911e-03	ci right 1.791634e-03	k: 976	n:580000
ACMSD   580000 perm   228 sec   (2546 perm/sec)   p_kst 1.682759e-03   p_cons 1.117603e-01   p_joint 1.682759e-03

Joint ci ratio: 1.245441e-01	ci left: 1.571852e-03	ci right 1.782242e-03	k: 988	n:590000
Cons ci ratio: 1.439296e-02	ci left: 1.108787e-01	ci right 1.124878e-01	k: 65892	n:590000
KS ci ratio: 1.245441e-01	ci left: 1.571852e-03	ci right 1.782242e-03	k: 988	n:590000
ACMSD   590000 perm   234 sec   (2520 perm/sec)   p_kst 1.674576e-03   p_cons 1.116814e-01   p_joint 1.674576e-03

Joint ci ratio: 1.239199e-01	ci left: 1.561803e-03	ci right 1.769723e-03	k: 998	n:600000
Cons ci ratio: 1.427645e-02	ci left: 1.108309e-01	ci right 1.124262e-01	k: 66976	n:600000
KS ci ratio: 1.239199e-01	ci left: 1.561803e-03	ci right 1.769723e-03	k: 998	n:600000
ACMSD   600000 perm   240 sec   (2495 perm/sec)   p_kst 1.663333e-03   p_cons 1.116267e-01   p_joint 1.663333e-03

Joint ci ratio: 1.229394e-01	ci left: 1.561619e-03	ci right 1.767750e-03	k: 1014	n:610000
Cons ci ratio: 1.416050e-02	ci left: 1.108158e-01	ci right 1.123978e-01	k: 68079	n:610000
KS ci ratio: 1.229394e-01	ci left: 1.561619e-03	ci right 1.767750e-03	k: 1014	n:610000
ACMSD   610000 perm   247 sec   (2473 perm/sec)   p_kst 1.662295e-03   p_cons 1.116049e-01   p_joint 1.662295e-03

Joint ci ratio: 1.221005e-01	ci left: 1.558320e-03	ci right 1.762510e-03	k: 1028	n:620000
Cons ci ratio: 1.404665e-02	ci left: 1.108108e-01	ci right 1.123799e-01	k: 69188	n:620000
KS ci ratio: 1.221005e-01	ci left: 1.558320e-03	ci right 1.762510e-03	k: 1028	n:620000
ACMSD   620000 perm   253 sec   (2449 perm/sec)   p_kst 1.658065e-03   p_cons 1.115935e-01   p_joint 1.658065e-03

Joint ci ratio: 1.213368e-01	ci left: 1.553592e-03	ci right 1.755797e-03	k: 1041	n:630000
Cons ci ratio: 1.393104e-02	ci left: 1.108694e-01	ci right 1.124263e-01	k: 70337	n:630000
KS ci ratio: 1.213368e-01	ci left: 1.553592e-03	ci right 1.755797e-03	k: 1041	n:630000
ACMSD   630000 perm   260 sec   (2427 perm/sec)   p_kst 1.652381e-03   p_cons 1.116460e-01   p_joint 1.652381e-03

Joint ci ratio: 1.203589e-01	ci left: 1.555076e-03	ci right 1.755728e-03	k: 1058	n:640000
Cons ci ratio: 1.382400e-02	ci left: 1.108436e-01	ci right 1.123881e-01	k: 71433	n:640000
KS ci ratio: 1.203589e-01	ci left: 1.555076e-03	ci right 1.755728e-03	k: 1058	n:640000
ACMSD   640000 perm   266 sec   (2404 perm/sec)   p_kst 1.653125e-03   p_cons 1.116141e-01   p_joint 1.653125e-03

Joint ci ratio: 1.195156e-01	ci left: 1.553537e-03	ci right 1.752486e-03	k: 1073	n:650000
Cons ci ratio: 1.371780e-02	ci left: 1.108416e-01	ci right 1.123741e-01	k: 72544	n:650000
KS ci ratio: 1.195156e-01	ci left: 1.553537e-03	ci right 1.752486e-03	k: 1073	n:650000
ACMSD   650000 perm   273 sec   (2382 perm/sec)   p_kst 1.650769e-03   p_cons 1.116062e-01   p_joint 1.650769e-03

Joint ci ratio: 1.183636e-01	ci left: 1.560870e-03	ci right 1.758697e-03	k: 1094	n:660000
Cons ci ratio: 1.360943e-02	ci left: 1.109063e-01	ci right 1.124275e-01	k: 73699	n:660000
KS ci ratio: 1.183636e-01	ci left: 1.560870e-03	ci right 1.758697e-03	k: 1094	n:660000
ACMSD   660000 perm   280 sec   (2361 perm/sec)   p_kst 1.657576e-03   p_cons 1.116652e-01   p_joint 1.657576e-03

Joint ci ratio: 1.176143e-01	ci left: 1.557852e-03	ci right 1.753960e-03	k: 1108	n:670000
Cons ci ratio: 1.350349e-02	ci left: 1.109705e-01	ci right 1.124806e-01	k: 74855	n:670000
KS ci ratio: 1.176143e-01	ci left: 1.557852e-03	ci right 1.753960e-03	k: 1108	n:670000
ACMSD   670000 perm   286 sec   (2341 perm/sec)   p_kst 1.653731e-03   p_cons 1.117239e-01   p_joint 1.653731e-03

Joint ci ratio: 1.164643e-01	ci left: 1.566349e-03	ci right 1.761465e-03	k: 1130	n:680000
Cons ci ratio: 1.339979e-02	ci left: 1.110358e-01	ci right 1.125351e-01	k: 76013	n:680000
KS ci ratio: 1.164643e-01	ci left: 1.566349e-03	ci right 1.761465e-03	k: 1130	n:680000
ACMSD   680000 perm   293 sec   (2321 perm/sec)   p_kst 1.661765e-03   p_cons 1.117838e-01   p_joint 1.661765e-03

Joint ci ratio: 1.157504e-01	ci left: 1.563349e-03	ci right 1.756816e-03	k: 1144	n:690000
Cons ci ratio: 1.329970e-02	ci left: 1.110805e-01	ci right 1.125691e-01	k: 77158	n:690000
KS ci ratio: 1.157504e-01	ci left: 1.563349e-03	ci right 1.756816e-03	k: 1144	n:690000
ACMSD   690000 perm   300 sec   (2301 perm/sec)   p_kst 1.657971e-03   p_cons 1.118232e-01   p_joint 1.657971e-03

Joint ci ratio: 1.150494e-01	ci left: 1.560438e-03	ci right 1.752296e-03	k: 1158	n:700000
Cons ci ratio: 1.320277e-02	ci left: 1.111097e-01	ci right 1.125878e-01	k: 78293	n:700000
KS ci ratio: 1.150494e-01	ci left: 1.560438e-03	ci right 1.752296e-03	k: 1158	n:700000
ACMSD   700000 perm   307 sec   (2282 perm/sec)   p_kst 1.654286e-03   p_cons 1.118471e-01   p_joint 1.654286e-03

Joint ci ratio: 1.145077e-01	ci left: 1.553507e-03	ci right 1.743554e-03	k: 1169	n:710000
Cons ci ratio: 1.310412e-02	ci left: 1.111957e-01	ci right 1.126638e-01	k: 79469	n:710000
KS ci ratio: 1.145077e-01	ci left: 1.553507e-03	ci right 1.743554e-03	k: 1169	n:710000
ACMSD   710000 perm   314 sec   (2263 perm/sec)   p_kst 1.646479e-03   p_cons 1.119282e-01   p_joint 1.646479e-03

Joint ci ratio: 1.134933e-01	ci left: 1.560266e-03	ci right 1.749335e-03	k: 1190	n:720000
Cons ci ratio: 1.300929e-02	ci left: 1.112544e-01	ci right 1.127126e-01	k: 80627	n:720000
KS ci ratio: 1.134933e-01	ci left: 1.560266e-03	ci right 1.749335e-03	k: 1190	n:720000
ACMSD   720000 perm   321 sec   (2245 perm/sec)   p_kst 1.652778e-03   p_cons 1.119819e-01   p_joint 1.652778e-03

Joint ci ratio: 1.129262e-01	ci left: 1.554865e-03	ci right 1.742276e-03	k: 1202	n:730000
Cons ci ratio: 1.292102e-02	ci left: 1.112419e-01	ci right 1.126899e-01	k: 81734	n:730000
KS ci ratio: 1.129262e-01	ci left: 1.554865e-03	ci right 1.742276e-03	k: 1202	n:730000
ACMSD   730000 perm   328 sec   (2226 perm/sec)   p_kst 1.646575e-03   p_cons 1.119644e-01   p_joint 1.646575e-03

Joint ci ratio: 1.122750e-01	ci left: 1.552240e-03	ci right 1.738183e-03	k: 1216	n:740000
Cons ci ratio: 1.283007e-02	ci left: 1.112985e-01	ci right 1.127370e-01	k: 82892	n:740000
KS ci ratio: 1.122750e-01	ci left: 1.552240e-03	ci right 1.738183e-03	k: 1216	n:740000
ACMSD   740000 perm   335 sec   (2208 perm/sec)   p_kst 1.643243e-03   p_cons 1.120162e-01   p_joint 1.643243e-03

Joint ci ratio: 1.116349e-01	ci left: 1.549687e-03	ci right 1.734197e-03	k: 1230	n:750000
Cons ci ratio: 1.274247e-02	ci left: 1.113310e-01	ci right 1.127600e-01	k: 84033	n:750000
KS ci ratio: 1.116349e-01	ci left: 1.549687e-03	ci right 1.734197e-03	k: 1230	n:750000
ACMSD   750000 perm   342 sec   (2191 perm/sec)   p_kst 1.640000e-03   p_cons 1.120440e-01   p_joint 1.640000e-03

Joint ci ratio: 1.109165e-01	ci left: 1.549763e-03	ci right 1.733016e-03	k: 1246	n:760000
Cons ci ratio: 1.265639e-02	ci left: 1.113666e-01	ci right 1.127864e-01	k: 85177	n:760000
KS ci ratio: 1.109165e-01	ci left: 1.549763e-03	ci right 1.733016e-03	k: 1246	n:760000
ACMSD   760000 perm   350 sec   (2174 perm/sec)   p_kst 1.639474e-03   p_cons 1.120750e-01   p_joint 1.639474e-03

Joint ci ratio: 1.101680e-01	ci left: 1.551104e-03	ci right 1.733198e-03	k: 1263	n:770000
Cons ci ratio: 1.257737e-02	ci left: 1.113171e-01	ci right 1.127273e-01	k: 86256	n:770000
KS ci ratio: 1.101680e-01	ci left: 1.551104e-03	ci right 1.733198e-03	k: 1263	n:770000
ACMSD   770000 perm   358 sec   (2154 perm/sec)   p_kst 1.640260e-03   p_cons 1.120208e-01   p_joint 1.640260e-03

Joint ci ratio: 1.097352e-01	ci left: 1.543685e-03	ci right 1.724151e-03	k: 1273	n:780000
Cons ci ratio: 1.249618e-02	ci left: 1.113265e-01	ci right 1.127277e-01	k: 87380	n:780000
KS ci ratio: 1.097352e-01	ci left: 1.543685e-03	ci right 1.724151e-03	k: 1273	n:780000
ACMSD   780000 perm   365 sec   (2136 perm/sec)   p_kst 1.632051e-03   p_cons 1.120256e-01   p_joint 1.632051e-03

Joint ci ratio: 1.086736e-01	ci left: 1.554927e-03	ci right 1.734835e-03	k: 1298	n:790000
Cons ci ratio: 1.241528e-02	ci left: 1.113559e-01	ci right 1.127483e-01	k: 88520	n:790000
KS ci ratio: 1.086736e-01	ci left: 1.554927e-03	ci right 1.734835e-03	k: 1298	n:790000
ACMSD   790000 perm   373 sec   (2118 perm/sec)   p_kst 1.643038e-03   p_cons 1.120506e-01   p_joint 1.643038e-03

Joint ci ratio: 1.080104e-01	ci left: 1.554948e-03	ci right 1.733691e-03	k: 1314	n:800000
Cons ci ratio: 1.233833e-02	ci left: 1.113459e-01	ci right 1.127294e-01	k: 89629	n:800000
KS ci ratio: 1.080104e-01	ci left: 1.554948e-03	ci right 1.733691e-03	k: 1314	n:800000
ACMSD   800000 perm   381 sec   (2101 perm/sec)   p_kst 1.642500e-03   p_cons 1.120363e-01   p_joint 1.642500e-03

Joint ci ratio: 1.077247e-01	ci left: 1.544160e-03	ci right 1.721163e-03	k: 1321	n:810000
Cons ci ratio: 1.226219e-02	ci left: 1.113460e-01	ci right 1.127210e-01	k: 90746	n:810000
KS ci ratio: 1.077247e-01	ci left: 1.544160e-03	ci right 1.721163e-03	k: 1321	n:810000
ACMSD   810000 perm   389 sec   (2084 perm/sec)   p_kst 1.630864e-03   p_cons 1.120321e-01   p_joint 1.630864e-03

Joint ci ratio: 1.071188e-01	ci left: 1.543130e-03	ci right 1.718958e-03	k: 1336	n:820000
Cons ci ratio: 1.219006e-02	ci left: 1.113036e-01	ci right 1.126699e-01	k: 91828	n:820000
KS ci ratio: 1.071188e-01	ci left: 1.543130e-03	ci right 1.718958e-03	k: 1336	n:820000
ACMSD   820000 perm   397 sec   (2066 perm/sec)   p_kst 1.629268e-03   p_cons 1.119854e-01   p_joint 1.629268e-03

Joint ci ratio: 1.062479e-01	ci left: 1.550337e-03	ci right 1.725460e-03	k: 1358	n:830000
Cons ci ratio: 1.211500e-02	ci left: 1.113307e-01	ci right 1.126889e-01	k: 92967	n:830000
KS ci ratio: 1.062479e-01	ci left: 1.550337e-03	ci right 1.725460e-03	k: 1358	n:830000
ACMSD   830000 perm   405 sec   (2049 perm/sec)   p_kst 1.636145e-03   p_cons 1.120084e-01   p_joint 1.636145e-03

Joint ci ratio: 1.055895e-01	ci left: 1.551582e-03	ci right 1.725693e-03	k: 1375	n:840000
Cons ci ratio: 1.203864e-02	ci left: 1.114011e-01	ci right 1.127515e-01	k: 94143	n:840000
KS ci ratio: 1.055895e-01	ci left: 1.551582e-03	ci right 1.725693e-03	k: 1375	n:840000
ACMSD   840000 perm   413 sec   (2033 perm/sec)   p_kst 1.636905e-03   p_cons 1.120750e-01   p_joint 1.636905e-03

Joint ci ratio: 1.048678e-01	ci left: 1.555093e-03	ci right 1.728331e-03	k: 1394	n:850000
Cons ci ratio: 1.196838e-02	ci left: 1.113925e-01	ci right 1.127349e-01	k: 95253	n:850000
KS ci ratio: 1.048678e-01	ci left: 1.555093e-03	ci right 1.728331e-03	k: 1394	n:850000
ACMSD   850000 perm   421 sec   (2018 perm/sec)   p_kst 1.640000e-03   p_cons 1.120624e-01   p_joint 1.640000e-03

Joint ci ratio: 1.040502e-01	ci left: 1.561924e-03	ci right 1.734484e-03	k: 1416	n:860000
Cons ci ratio: 1.189940e-02	ci left: 1.113829e-01	ci right 1.127174e-01	k: 96362	n:860000
KS ci ratio: 1.040502e-01	ci left: 1.561924e-03	ci right 1.734484e-03	k: 1416	n:860000
ACMSD   860000 perm   429 sec   (2003 perm/sec)   p_kst 1.646512e-03   p_cons 1.120488e-01   p_joint 1.646512e-03

Joint ci ratio: 1.033954e-01	ci left: 1.564124e-03	ci right 1.735773e-03	k: 1434	n:870000
Cons ci ratio: 1.183338e-02	ci left: 1.113438e-01	ci right 1.126703e-01	k: 97445	n:870000
KS ci ratio: 1.033954e-01	ci left: 1.564124e-03	ci right 1.735773e-03	k: 1434	n:870000
ACMSD   870000 perm   437 sec   (1989 perm/sec)   p_kst 1.648276e-03   p_cons 1.120057e-01   p_joint 1.648276e-03

Joint ci ratio: 1.028593e-01	ci left: 1.562956e-03	ci right 1.733533e-03	k: 1449	n:880000
Cons ci ratio: 1.176589e-02	ci left: 1.113486e-01	ci right 1.126676e-01	k: 98566	n:880000
KS ci ratio: 1.028593e-01	ci left: 1.562956e-03	ci right 1.733533e-03	k: 1449	n:880000
ACMSD   880000 perm   446 sec   (1975 perm/sec)   p_kst 1.646591e-03   p_cons 1.120068e-01   p_joint 1.646591e-03

Joint ci ratio: 1.024015e-01	ci left: 1.559626e-03	ci right 1.729037e-03	k: 1462	n:890000
Cons ci ratio: 1.170436e-02	ci left: 1.112715e-01	ci right 1.125827e-01	k: 99614	n:890000
KS ci ratio: 1.024015e-01	ci left: 1.559626e-03	ci right 1.729037e-03	k: 1462	n:890000
ACMSD   890000 perm   454 sec   (1960 perm/sec)   p_kst 1.642697e-03   p_cons 1.119258e-01   p_joint 1.642697e-03

Joint ci ratio: 1.017085e-01	ci left: 1.563952e-03	ci right 1.732615e-03	k: 1482	n:900000
Cons ci ratio: 1.163768e-02	ci left: 1.113004e-01	ci right 1.126043e-01	k: 100756	n:900000
KS ci ratio: 1.017085e-01	ci left: 1.563952e-03	ci right 1.732615e-03	k: 1482	n:900000
ACMSD   900000 perm   463 sec   (1945 perm/sec)   p_kst 1.646667e-03   p_cons 1.119511e-01   p_joint 1.646667e-03

Joint ci ratio: 1.011305e-01	ci left: 1.564973e-03	ci right 1.732730e-03	k: 1499	n:910000
Cons ci ratio: 1.157545e-02	ci left: 1.112716e-01	ci right 1.125682e-01	k: 101846	n:910000
KS ci ratio: 1.011305e-01	ci left: 1.564973e-03	ci right 1.732730e-03	k: 1499	n:910000
ACMSD   910000 perm   471 sec   (1931 perm/sec)   p_kst 1.647253e-03   p_cons 1.119187e-01   p_joint 1.647253e-03

Joint ci ratio: 1.004958e-01	ci left: 1.568094e-03	ci right 1.735069e-03	k: 1518	n:920000
Cons ci ratio: 1.151269e-02	ci left: 1.112695e-01	ci right 1.125590e-01	k: 102960	n:920000
KS ci ratio: 1.004958e-01	ci left: 1.568094e-03	ci right 1.735069e-03	k: 1518	n:920000
ACMSD   920000 perm   480 sec   (1916 perm/sec)   p_kst 1.650000e-03   p_cons 1.119130e-01   p_joint 1.650000e-03

Joint ci ratio: 1.001670e-01	ci left: 1.561716e-03	ci right 1.727435e-03	k: 1528	n:930000
Cons ci ratio: 1.144433e-02	ci left: 1.113822e-01	ci right 1.126653e-01	k: 104181	n:930000
KS ci ratio: 1.001670e-01	ci left: 1.561716e-03	ci right 1.727435e-03	k: 1528	n:930000
ACMSD   930000 perm   489 sec   (1902 perm/sec)   p_kst 1.643011e-03   p_cons 1.120226e-01   p_joint 1.643011e-03

Joint ci ratio: 9.964704e-02	ci left: 1.561698e-03	ci right 1.726504e-03	k: 1544	n:940000
Cons ci ratio: 1.138653e-02	ci left: 1.113292e-01	ci right 1.126051e-01	k: 105248	n:940000
KS ci ratio: 9.964704e-02	ci left: 1.561698e-03	ci right 1.726504e-03	k: 1544	n:940000
ACMSD   940000 perm   498 sec   (1889 perm/sec)   p_kst 1.642553e-03   p_cons 1.119660e-01   p_joint 1.642553e-03

Outputting figure to mutsig2_images.part000000000002/ACMSD.2_1051_940000_0.0016426_0.11197_0.0016426.png
                gene_name: ACMSD
               theta_stop: 0.100 
                    nperm: 940000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0017 

Current progress: 86 percent done.
ACN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
Cons ci ratio: 2.220488e-03	ci left: 9.956027e-01	ci right 9.978928e-01	k: 9969	n:10000
KS ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
ACN9   10000 perm   1 sec   (6961 perm/sec)   p_kst 6.519000e-01   p_cons 9.969000e-01   p_joint 8.810000e-01

Outputting figure to mutsig2_images.part000000000002/ACN9.2_386_10000_0.6519_0.9969_0.881.png
                gene_name: ACN9
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 88 percent done.
ACOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
ACOT1   10000 perm   2 sec   (6648 perm/sec)   p_kst 2.464000e-01   p_cons 4.112000e-01   p_joint 5.092000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT1.2_1278_10000_0.2464_0.4112_0.5092.png
                gene_name: ACOT1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 89 percent done.
ACOT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
Cons ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
KS ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
ACOT11   10000 perm   2 sec   (6050 perm/sec)   p_kst 8.470000e-02   p_cons 1.972000e-01   p_joint 1.828000e-01

Joint ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
Cons ci ratio: 5.585571e-02	ci left: 1.920513e-01	ci right 2.031368e-01	k: 3951	n:20000
KS ci ratio: 9.234391e-02	ci left: 7.882080e-02	ci right 8.650104e-02	k: 1652	n:20000
ACOT11   20000 perm   4 sec   (5393 perm/sec)   p_kst 8.260000e-02   p_cons 1.975500e-01   p_joint 8.435000e-02

Outputting figure to mutsig2_images.part000000000002/ACOT11.2_2052_20000_0.0826_0.19755_0.08435.png
                gene_name: ACOT11
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.088 

Current progress: 91 percent done.
ACOT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
Cons ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
KS ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
ACOT7   10000 perm   2 sec   (6610 perm/sec)   p_kst 5.528000e-01   p_cons 6.212000e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT7.2_1437_10000_0.5528_0.6212_0.4622.png
                gene_name: ACOT7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 92 percent done.
ACOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
Cons ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
KS ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
ACOX2   10000 perm   2 sec   (6028 perm/sec)   p_kst 2.663000e-01   p_cons 6.929000e-01   p_joint 9.152000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX2.2_2102_10000_0.2663_0.6929_0.9152.png
                gene_name: ACOX2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 94 percent done.
ACP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.009633e-02	ci left: 6.195460e-01	ci right 6.385788e-01	k: 6291	n:10000
Cons ci ratio: 1.910346e-02	ci left: 8.002425e-01	ci right 8.157777e-01	k: 8081	n:10000
KS ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
ACP1   10000 perm   2 sec   (6657 perm/sec)   p_kst 5.022000e-01   p_cons 8.081000e-01   p_joint 6.291000e-01

Outputting figure to mutsig2_images.part000000000002/ACP1.2_656_10000_0.5022_0.8081_0.6291.png
                gene_name: ACP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 95 percent done.
ACPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
Cons ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
ACPL2   10000 perm   2 sec   (6339 perm/sec)   p_kst 9.240000e-02   p_cons 9.000000e-03   p_joint 3.600000e-03

Joint ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
Cons ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
KS ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
ACPL2   20000 perm   4 sec   (5615 perm/sec)   p_kst 9.250000e-02   p_cons 8.750000e-03   p_joint 3.450000e-03

Joint ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
Cons ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
KS ci ratio: 7.042741e-02	ci left: 9.029401e-02	ci right 9.691827e-02	k: 2807	n:30000
ACPL2   30000 perm   6 sec   (5333 perm/sec)   p_kst 9.356667e-02   p_cons 8.600000e-03   p_joint 1.833333e-03

Joint ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
Cons ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
KS ci ratio: 6.082201e-02	ci left: 9.120649e-02	ci right 9.695260e-02	k: 3762	n:40000
ACPL2   40000 perm   8 sec   (5158 perm/sec)   p_kst 9.405000e-02   p_cons 8.800000e-03   p_joint 1.825000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 1.864808e-01	ci left: 7.942767e-03	ci right 9.595025e-03	k: 437	n:50000
KS ci ratio: 5.451458e-02	ci left: 9.115936e-02	ci right 9.628792e-02	k: 4685	n:50000
ACPL2   50000 perm   10 sec   (5021 perm/sec)   p_kst 9.370000e-02   p_cons 8.740000e-03   p_joint 2.360000e-03

Joint ci ratio: 2.449557e-01	ci left: 3.729594e-03	ci right 4.785910e-03	k: 254	n:60000
Cons ci ratio: 1.676148e-01	ci left: 8.275796e-03	ci right 9.805593e-03	k: 541	n:60000
KS ci ratio: 4.995228e-02	ci left: 9.075341e-02	ci right 9.541937e-02	k: 5584	n:60000
ACPL2   60000 perm   12 sec   (4881 perm/sec)   p_kst 9.306667e-02   p_cons 9.016667e-03   p_joint 4.233333e-03

Joint ci ratio: 2.247086e-01	ci left: 3.842257e-03	ci right 4.828097e-03	k: 302	n:70000
Cons ci ratio: 1.558459e-01	ci left: 8.258721e-03	ci right 9.668149e-03	k: 626	n:70000
KS ci ratio: 4.635218e-02	ci left: 9.054724e-02	ci right 9.485802e-02	k: 6488	n:70000
ACPL2   70000 perm   15 sec   (4772 perm/sec)   p_kst 9.268571e-02   p_cons 8.942857e-03   p_joint 4.314286e-03

Joint ci ratio: 1.952630e-01	ci left: 4.523008e-03	ci right 5.513412e-03	k: 400	n:80000
Cons ci ratio: 1.456342e-01	ci left: 8.321031e-03	ci right 9.639947e-03	k: 717	n:80000
KS ci ratio: 4.332955e-02	ci left: 9.079793e-02	ci right 9.483166e-02	k: 7424	n:80000
ACPL2   80000 perm   17 sec   (4674 perm/sec)   p_kst 9.280000e-02   p_cons 8.962500e-03   p_joint 5.000000e-03

Joint ci ratio: 1.843270e-01	ci left: 4.539046e-03	ci right 5.471076e-03	k: 449	n:90000
Cons ci ratio: 1.380619e-01	ci left: 8.264528e-03	ci right 9.500772e-03	k: 798	n:90000
KS ci ratio: 4.091939e-02	ci left: 9.063674e-02	ci right 9.443401e-02	k: 8327	n:90000
ACPL2   90000 perm   20 sec   (4582 perm/sec)   p_kst 9.252222e-02   p_cons 8.866667e-03   p_joint 4.988889e-03

Joint ci ratio: 1.911020e-01	ci left: 3.789561e-03	ci right 4.599612e-03	k: 418	n:100000
Cons ci ratio: 1.309606e-01	ci left: 8.298147e-03	ci right 9.470605e-03	k: 887	n:100000
KS ci ratio: 3.885736e-02	ci left: 9.057233e-02	ci right 9.417136e-02	k: 9236	n:100000
ACPL2   100000 perm   22 sec   (4506 perm/sec)   p_kst 9.236000e-02   p_cons 8.870000e-03   p_joint 4.180000e-03

Joint ci ratio: 1.810097e-01	ci left: 3.861120e-03	ci right 4.638104e-03	k: 466	n:110000
Cons ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
KS ci ratio: 3.707660e-02	ci left: 9.053261e-02	ci right 9.396165e-02	k: 10146	n:110000
ACPL2   110000 perm   25 sec   (4389 perm/sec)   p_kst 9.223636e-02   p_cons 8.863636e-03   p_joint 4.236364e-03

Joint ci ratio: 1.727012e-01	ci left: 3.905738e-03	ci right 4.651865e-03	k: 512	n:120000
Cons ci ratio: 1.183569e-01	ci left: 8.521918e-03	ci right 9.602008e-03	k: 1086	n:120000
KS ci ratio: 3.547425e-02	ci left: 9.071762e-02	ci right 9.400211e-02	k: 11082	n:120000
ACPL2   120000 perm   28 sec   (4304 perm/sec)   p_kst 9.235000e-02   p_cons 9.050000e-03   p_joint 4.266667e-03

Joint ci ratio: 1.524297e-01	ci left: 4.675607e-03	ci right 5.454414e-03	k: 657	n:130000
Cons ci ratio: 1.143813e-01	ci left: 8.441434e-03	ci right 9.472956e-03	k: 1163	n:130000
KS ci ratio: 3.405223e-02	ci left: 9.093029e-02	ci right 9.408791e-02	k: 12025	n:130000
ACPL2   130000 perm   31 sec   (4230 perm/sec)   p_kst 9.250000e-02   p_cons 8.946154e-03   p_joint 5.053846e-03

Joint ci ratio: 1.467409e-01	ci left: 4.699169e-03	ci right 5.450126e-03	k: 709	n:140000
Cons ci ratio: 1.096718e-01	ci left: 8.546660e-03	ci right 9.545262e-03	k: 1265	n:140000
KS ci ratio: 3.279553e-02	ci left: 9.107938e-02	ci right 9.412324e-02	k: 12963	n:140000
ACPL2   140000 perm   34 sec   (4131 perm/sec)   p_kst 9.259286e-02   p_cons 9.035714e-03   p_joint 5.064286e-03

Joint ci ratio: 1.114955e-01	ci left: 7.717406e-03	ci right 8.635091e-03	k: 1225	n:150000
Cons ci ratio: 1.064863e-01	ci left: 8.476323e-03	ci right 9.436135e-03	k: 1342	n:150000
KS ci ratio: 3.168476e-02	ci left: 9.112439e-02	ci right 9.406471e-02	k: 13888	n:150000
ACPL2   150000 perm   37 sec   (4069 perm/sec)   p_kst 9.258667e-02   p_cons 8.946667e-03   p_joint 8.166667e-03

Joint ci ratio: 1.079856e-01	ci left: 7.727426e-03	ci right 8.615535e-03	k: 1306	n:160000
Cons ci ratio: 1.027988e-01	ci left: 8.543039e-03	ci right 9.474883e-03	k: 1440	n:160000
KS ci ratio: 3.068313e-02	ci left: 9.114668e-02	ci right 9.399310e-02	k: 14810	n:160000
ACPL2   160000 perm   40 sec   (4009 perm/sec)   p_kst 9.256250e-02   p_cons 9.000000e-03   p_joint 8.162500e-03

Joint ci ratio: 1.045978e-01	ci left: 7.765314e-03	ci right 8.628055e-03	k: 1392	n:170000
Cons ci ratio: 9.953497e-02	ci left: 8.590936e-03	ci right 9.496514e-03	k: 1536	n:170000
KS ci ratio: 2.979800e-02	ci left: 9.101573e-02	ci right 9.377465e-02	k: 15706	n:170000
ACPL2   170000 perm   43 sec   (3948 perm/sec)   p_kst 9.238824e-02   p_cons 9.035294e-03   p_joint 8.188235e-03

Joint ci ratio: 1.314447e-01	ci left: 4.593380e-03	ci right 5.244944e-03	k: 884	n:180000
Cons ci ratio: 9.756321e-02	ci left: 8.455006e-03	ci right 9.327588e-03	k: 1599	n:180000
KS ci ratio: 2.895264e-02	ci left: 9.108806e-02	ci right 9.376953e-02	k: 16636	n:180000
ACPL2   180000 perm   46 sec   (3889 perm/sec)   p_kst 9.242222e-02   p_cons 8.883333e-03   p_joint 4.911111e-03

Joint ci ratio: 1.283653e-01	ci left: 4.570581e-03	ci right 5.202565e-03	k: 927	n:190000
Cons ci ratio: 9.530009e-02	ci left: 8.405485e-03	ci right 9.251709e-03	k: 1676	n:190000
KS ci ratio: 2.820369e-02	ci left: 9.098641e-02	ci right 9.359447e-02	k: 17534	n:190000
ACPL2   190000 perm   50 sec   (3830 perm/sec)   p_kst 9.228421e-02   p_cons 8.821053e-03   p_joint 4.878947e-03

Joint ci ratio: 1.293651e-01	ci left: 4.274266e-03	ci right 4.870233e-03	k: 913	n:200000
Cons ci ratio: 9.286749e-02	ci left: 8.419743e-03	ci right 9.244588e-03	k: 1765	n:200000
KS ci ratio: 2.750343e-02	ci left: 9.093549e-02	ci right 9.347634e-02	k: 18440	n:200000
ACPL2   200000 perm   53 sec   (3775 perm/sec)   p_kst 9.220000e-02   p_cons 8.825000e-03   p_joint 4.565000e-03

Joint ci ratio: 1.270277e-01	ci left: 4.227436e-03	ci right 4.805420e-03	k: 947	n:210000
Cons ci ratio: 9.044015e-02	ci left: 8.465476e-03	ci right 9.271978e-03	k: 1861	n:210000
KS ci ratio: 2.687046e-02	ci left: 9.078129e-02	ci right 9.325855e-02	k: 19323	n:210000
ACPL2   210000 perm   56 sec   (3721 perm/sec)   p_kst 9.201429e-02   p_cons 8.861905e-03   p_joint 4.509524e-03

Joint ci ratio: 1.246850e-01	ci left: 4.193759e-03	ci right 4.755783e-03	k: 983	n:220000
Cons ci ratio: 8.862859e-02	ci left: 8.422836e-03	ci right 9.208369e-03	k: 1938	n:220000
KS ci ratio: 2.623853e-02	ci left: 9.089930e-02	ci right 9.332056e-02	k: 20263	n:220000
ACPL2   220000 perm   60 sec   (3668 perm/sec)   p_kst 9.210455e-02   p_cons 8.809091e-03   p_joint 4.468182e-03

Joint ci ratio: 1.211033e-01	ci left: 4.260067e-03	ci right 4.813403e-03	k: 1042	n:230000
Cons ci ratio: 8.655428e-02	ci left: 8.456375e-03	ci right 9.225644e-03	k: 2032	n:230000
KS ci ratio: 2.565385e-02	ci left: 9.097740e-02	ci right 9.334594e-02	k: 21196	n:230000
ACPL2   230000 perm   64 sec   (3618 perm/sec)   p_kst 9.215652e-02   p_cons 8.834783e-03   p_joint 4.530435e-03

Joint ci ratio: 1.253495e-01	ci left: 3.803868e-03	ci right 4.316557e-03	k: 973	n:240000
Cons ci ratio: 8.490146e-02	ci left: 8.430208e-03	ci right 9.181726e-03	k: 2112	n:240000
KS ci ratio: 2.512911e-02	ci left: 9.090039e-02	ci right 9.321781e-02	k: 22093	n:240000
ACPL2   240000 perm   67 sec   (3569 perm/sec)   p_kst 9.205417e-02   p_cons 8.800000e-03   p_joint 4.054167e-03

Joint ci ratio: 1.163489e-01	ci left: 4.256930e-03	ci right 4.786658e-03	k: 1129	n:250000
Cons ci ratio: 8.347435e-02	ci left: 8.378843e-03	ci right 9.112614e-03	k: 2185	n:250000
KS ci ratio: 2.463354e-02	ci left: 9.084193e-02	ci right 9.311154e-02	k: 22993	n:250000
ACPL2   250000 perm   71 sec   (3522 perm/sec)   p_kst 9.197200e-02   p_cons 8.740000e-03   p_joint 4.516000e-03

Joint ci ratio: 1.136146e-01	ci left: 4.298662e-03	ci right 4.820170e-03	k: 1184	n:260000
Cons ci ratio: 8.160817e-02	ci left: 8.437033e-03	ci right 9.158596e-03	k: 2286	n:260000
KS ci ratio: 2.415226e-02	ci left: 9.088402e-02	ci right 9.310970e-02	k: 23918	n:260000
ACPL2   260000 perm   75 sec   (3475 perm/sec)   p_kst 9.199231e-02   p_cons 8.792308e-03   p_joint 4.553846e-03

Joint ci ratio: 1.112448e-01	ci left: 4.323032e-03	ci right 4.835840e-03	k: 1235	n:270000
Cons ci ratio: 8.009902e-02	ci left: 8.440258e-03	ci right 9.148124e-03	k: 2373	n:270000
KS ci ratio: 2.369655e-02	ci left: 9.093444e-02	ci right 9.311877e-02	k: 24846	n:270000
ACPL2   270000 perm   79 sec   (3429 perm/sec)   p_kst 9.202222e-02   p_cons 8.788889e-03   p_joint 4.574074e-03

Joint ci ratio: 1.149060e-01	ci left: 3.901365e-03	ci right 4.380417e-03	k: 1158	n:280000
Cons ci ratio: 7.873518e-02	ci left: 8.429359e-03	ci right 9.123723e-03	k: 2456	n:280000
KS ci ratio: 2.328611e-02	ci left: 9.083597e-02	ci right 9.297963e-02	k: 25733	n:280000
ACPL2   280000 perm   83 sec   (3385 perm/sec)   p_kst 9.190357e-02   p_cons 8.771429e-03   p_joint 4.135714e-03

Joint ci ratio: 1.131156e-01	ci left: 3.890782e-03	ci right 4.360593e-03	k: 1195	n:290000
Cons ci ratio: 7.734661e-02	ci left: 8.439601e-03	ci right 9.121995e-03	k: 2545	n:290000
KS ci ratio: 2.287405e-02	ci left: 9.090583e-02	ci right 9.301268e-02	k: 26667	n:290000
ACPL2   290000 perm   87 sec   (3342 perm/sec)   p_kst 9.195517e-02   p_cons 8.775862e-03   p_joint 4.120690e-03

Joint ci ratio: 1.115881e-01	ci left: 3.867995e-03	ci right 4.328333e-03	k: 1228	n:300000
Cons ci ratio: 7.604357e-02	ci left: 8.445989e-03	ci right 9.116885e-03	k: 2633	n:300000
KS ci ratio: 2.249614e-02	ci left: 9.087517e-02	ci right 9.294605e-02	k: 27572	n:300000
ACPL2   300000 perm   91 sec   (3301 perm/sec)   p_kst 9.190667e-02   p_cons 8.776667e-03   p_joint 4.093333e-03

Joint ci ratio: 1.094696e-01	ci left: 3.893782e-03	ci right 4.347823e-03	k: 1276	n:310000
Cons ci ratio: 7.479038e-02	ci left: 8.455221e-03	ci right 9.115301e-03	k: 2722	n:310000
KS ci ratio: 2.210091e-02	ci left: 9.111317e-02	ci right 9.315253e-02	k: 28560	n:310000
ACPL2   310000 perm   95 sec   (3261 perm/sec)   p_kst 9.212903e-02   p_cons 8.780645e-03   p_joint 4.116129e-03

Joint ci ratio: 1.098661e-01	ci left: 3.744732e-03	ci right 4.183076e-03	k: 1267	n:320000
Cons ci ratio: 7.367651e-02	ci left: 8.445554e-03	ci right 9.094639e-03	k: 2805	n:320000
KS ci ratio: 2.176639e-02	ci left: 9.102561e-02	ci right 9.303179e-02	k: 29448	n:320000
ACPL2   320000 perm   99 sec   (3222 perm/sec)   p_kst 9.202500e-02   p_cons 8.765625e-03   p_joint 3.959375e-03

Joint ci ratio: 1.081731e-01	ci left: 3.749163e-03	ci right 4.180832e-03	k: 1307	n:330000
Cons ci ratio: 7.239639e-02	ci left: 8.487130e-03	ci right 9.127601e-03	k: 2905	n:330000
KS ci ratio: 2.140740e-02	ci left: 9.124816e-02	ci right 9.322567e-02	k: 30437	n:330000
ACPL2   330000 perm   104 sec   (3183 perm/sec)   p_kst 9.223333e-02   p_cons 8.803030e-03   p_joint 3.960606e-03

Joint ci ratio: 1.063581e-01	ci left: 3.767697e-03	ci right 4.193767e-03	k: 1352	n:340000
Cons ci ratio: 7.139674e-02	ci left: 8.474347e-03	ci right 9.104656e-03	k: 2987	n:340000
KS ci ratio: 2.108000e-02	ci left: 9.134372e-02	ci right 9.329265e-02	k: 31387	n:340000
ACPL2   340000 perm   108 sec   (3146 perm/sec)   p_kst 9.231471e-02   p_cons 8.785294e-03   p_joint 3.976471e-03

Joint ci ratio: 9.986630e-02	ci left: 4.163908e-03	ci right 4.604360e-03	k: 1533	n:350000
Cons ci ratio: 7.042581e-02	ci left: 8.465159e-03	ci right 9.085872e-03	k: 3070	n:350000
KS ci ratio: 2.078915e-02	ci left: 9.125771e-02	ci right 9.317762e-02	k: 32275	n:350000
ACPL2   350000 perm   113 sec   (3110 perm/sec)   p_kst 9.221429e-02   p_cons 8.771429e-03   p_joint 4.380000e-03

Outputting figure to mutsig2_images.part000000000002/ACPL2.2_1463_350000_0.092214_0.0087714_0.00438.png
                gene_name: ACPL2
               theta_stop: 0.100 
                    nperm: 350000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.0088 
      ci_cons_bounds_left: 0.0085 
     ci_cons_bounds_right: 0.0091 
                  p_joint: 0.0044 
     ci_joint_bounds_left: 0.0042 
    ci_joint_bounds_right: 0.0046 

Current progress: 97 percent done.
ACRV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
ACRV1   10000 perm   2 sec   (6652 perm/sec)   p_kst 5.520000e-01   p_cons 4.589000e-01   p_joint 4.933000e-01

Outputting figure to mutsig2_images.part000000000002/ACRV1.2_814_10000_0.552_0.4589_0.4933.png
                gene_name: ACRV1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 98 percent done.
ACSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.146986e-02	ci left: 2.801280e-01	ci right 2.979950e-01	k: 2890	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
ACSL4   10000 perm   2 sec   (6208 perm/sec)   p_kst 1.701000e-01   p_cons 5.323000e-01   p_joint 2.890000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL4.2_2192_10000_0.1701_0.5323_0.289.png
                gene_name: ACSL4
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000002
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 2 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 4421666: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000003> was used as the working directory.
Started at Wed Oct 24 17:29:25 2012
Results reported at Wed Oct 24 17:48:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000003.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000003.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 3  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000003.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1174.83 sec.
    Max Memory :      5279 MB
    Max Swap   :      7964 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
3
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 3
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 3: processing genes 182 - 271
Calculating significance of each gene.
Using projection method.
182	ACSM1	9.191882e-01
183	ACSM2A	5.651099e-01
184	ACSM2B	4.105353e-02
185	ACSM3	9.800801e-01
186	ACSM4	9.472187e-01
187	ACSM5	1
188	ACSS1	9.704807e-01
189	ACSS2	8.779832e-01
190	ACSS3	7.231784e-01
191	ACTA1	8.723151e-01
192	ACTA2	9.378493e-01
193	ACTB	1
194	ACTBL2	6.334207e-01
195	ACTC1	1.788181e-02
196	ACTG1	7.471740e-01
197	ACTG2	3.462763e-01
198	ACTL6A	7.159766e-01
199	ACTL6B	6.412271e-01
200	ACTL7A	1
201	ACTL7B	7.180264e-01
202	ACTL8	5.425982e-01
203	ACTL9	7.877392e-01
204	ACTN1	1
205	ACTN2	8.266426e-01
206	ACTN3	9.916898e-01
207	ACTN4	9.731290e-01
208	ACTR10	7.294009e-01
209	ACTR1A	6.736708e-01
210	ACTR1B	5.646511e-01
211	ACTR2	4.708327e-01
212	ACTR3	1
213	ACTR3B	6.232583e-01
214	ACTR3C	1.828930e-01
215	ACTR5	9.263043e-01
216	ACTR6	7.557084e-01
217	ACTR8	9.003951e-01
218	ACTRT1	8.947950e-02
219	ACTRT2	1.702840e-01
220	ACVR1	3.984009e-01
221	ACVR1B	1.190141e-01
222	ACVR1C	9.374278e-01
223	ACVR2A	6.192371e-01
224	ACVR2B	7.051709e-01
225	ACVRL1	4.282859e-01
226	ACY1	1
227	ACY3	6.804749e-01
228	ACYP1	1
229	ACYP2	2.198739e-01
230	ADA	1
231	ADAD1	9.187672e-02
232	ADAD2	9.362027e-01
233	ADAL	1
234	ADAM10	4.820265e-01
235	ADAM11	3.256372e-01
236	ADAM12	6.360958e-01
237	ADAM15	9.882494e-01
238	ADAM17	4.394620e-01
239	ADAM18	1
240	ADAM19	9.813860e-01
241	ADAM2	9.394250e-01
242	ADAM20	3.839648e-01
243	ADAM21	1.975968e-01
244	ADAM22	5.611483e-01
245	ADAM23	2.567108e-02
246	ADAM28	4.557227e-01
247	ADAM29	8.875830e-01
248	ADAM30	5.639781e-01
249	ADAM32	9.504272e-01
250	ADAM33	2.333568e-01
251	ADAM7	1.628523e-01
252	ADAM8	4.378787e-01
253	ADAM9	6.224665e-01
254	ADAMDEC1	3.354684e-01
255	ADAMTS1	2.209498e-02
256	ADAMTS10	9.964657e-01
257	ADAMTS12	1
258	ADAMTS13	9.684411e-01
259	ADAMTS14	9.971185e-01
260	ADAMTS15	9.968041e-01
261	ADAMTS16	6.019719e-05
262	ADAMTS17	7.750253e-02
263	ADAMTS18	1.659197e-04
264	ADAMTS19	4.739523e-02
265	ADAMTS2	5.595345e-05
266	ADAMTS20	3.005795e-01
267	ADAMTS3	4.582774e-02
268	ADAMTS4	8.324415e-01
269	ADAMTS5	8.537945e-01
270	ADAMTS6	9.647316e-01
271	ADAMTS7	1
Done

Running MutSig 2:
Scatter job 3: processing genes 182 - 271
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADAMTS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
Cons ci ratio: 8.274164e-02	ci left: 1.756613e-01	ci right 1.909236e-01	k: 1832	n:10000
KS ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
ADAMTS12   10000 perm   3 sec   (2972 perm/sec)   p_kst 7.572000e-01   p_cons 1.832000e-01   p_joint 4.207000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS12.62_4881_10000_0.7572_0.1832_0.4207.png
                gene_name: ADAMTS12
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 1 percent done.
ADAMTS20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
Cons ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
ADAMTS20   10000 perm   3 sec   (3509 perm/sec)   p_kst 8.780000e-02   p_cons 7.750000e-01   p_joint 1.807000e-01

Joint ci ratio: 5.724956e-02	ci left: 1.844351e-01	ci right 1.953552e-01	k: 3797	n:20000
Cons ci ratio: 1.494812e-02	ci left: 7.688453e-01	ci right 7.804748e-01	k: 15494	n:20000
KS ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
ADAMTS20   20000 perm   6 sec   (3245 perm/sec)   p_kst 8.860000e-02   p_cons 7.747000e-01   p_joint 1.898500e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS20.35_5888_20000_0.0886_0.7747_0.18985.png
                gene_name: ADAMTS20
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 3 percent done.
ADAMTS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
Cons ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
ADAMTS16   10000 perm   2 sec   (4191 perm/sec)   p_kst 6.310000e-02   p_cons 1.974000e-01   p_joint 8.440000e-02

Joint ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
Cons ci ratio: 5.820686e-02	ci left: 1.794419e-01	ci right 1.902499e-01	k: 3696	n:20000
KS ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
ADAMTS16   20000 perm   5 sec   (3846 perm/sec)   p_kst 6.845000e-02   p_cons 1.848000e-01   p_joint 1.166000e-01

Joint ci ratio: 6.086544e-02	ci left: 1.177573e-01	ci right 1.251828e-01	k: 3643	n:30000
Cons ci ratio: 4.751278e-02	ci left: 1.805210e-01	ci right 1.893401e-01	k: 5547	n:30000
KS ci ratio: 8.315383e-02	ci left: 6.609174e-02	ci right 7.185874e-02	k: 2068	n:30000
ADAMTS16   30000 perm   8 sec   (3712 perm/sec)   p_kst 6.893333e-02   p_cons 1.849000e-01   p_joint 1.214333e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS16.31_3767_30000_0.068933_0.1849_0.12143.png
                gene_name: ADAMTS16
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
ADAMTS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.541582e-02	ci left: 2.046155e-01	ci right 2.207523e-01	k: 2126	n:10000
Cons ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
ADAMTS18   10000 perm   2 sec   (4262 perm/sec)   p_kst 1.662000e-01   p_cons 4.177000e-01   p_joint 2.126000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS18.24_3758_10000_0.1662_0.4177_0.2126.png
                gene_name: ADAMTS18
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 5 percent done.
ACTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
Cons ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
KS ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
ACTN2   10000 perm   2 sec   (4534 perm/sec)   p_kst 3.588000e-01   p_cons 1.284000e-01   p_joint 2.554000e-01

Joint ci ratio: 5.821652e-02	ci left: 1.793925e-01	ci right 1.901993e-01	k: 3695	n:20000
Cons ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
KS ci ratio: 3.687817e-02	ci left: 3.542894e-01	ci right 3.676510e-01	k: 7219	n:20000
ACTN2   20000 perm   5 sec   (4164 perm/sec)   p_kst 3.609500e-01   p_cons 1.123000e-01   p_joint 1.847500e-01

Outputting figure to mutsig2_images.part000000000003/ACTN2.23_2769_20000_0.36095_0.1123_0.18475.png
                gene_name: ACTN2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 6 percent done.
ADAMTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
ADAMTS5   10000 perm   2 sec   (4331 perm/sec)   p_kst 1.680000e-02   p_cons 4.840000e-02   p_joint 5.930000e-02

Joint ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
Cons ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
KS ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
ADAMTS5   20000 perm   5 sec   (3993 perm/sec)   p_kst 1.640000e-02   p_cons 4.795000e-02   p_joint 2.855000e-02

Joint ci ratio: 1.901594e-01	ci left: 1.263752e-02	ci right 1.532449e-02	k: 418	n:30000
Cons ci ratio: 1.006431e-01	ci left: 4.570585e-02	ci right 5.058213e-02	k: 1443	n:30000
KS ci ratio: 1.754506e-01	ci left: 1.492932e-02	ci right 1.783210e-02	k: 490	n:30000
ADAMTS5   30000 perm   8 sec   (3860 perm/sec)   p_kst 1.633333e-02   p_cons 4.810000e-02   p_joint 1.393333e-02

Joint ci ratio: 1.343144e-01	ci left: 1.944797e-02	ci right 2.227219e-02	k: 833	n:40000
Cons ci ratio: 8.620758e-02	ci left: 4.702727e-02	ci right 5.128849e-02	k: 1965	n:40000
KS ci ratio: 1.595027e-01	ci left: 1.368751e-02	ci right 1.608368e-02	k: 594	n:40000
ADAMTS5   40000 perm   11 sec   (3760 perm/sec)   p_kst 1.485000e-02   p_cons 4.912500e-02   p_joint 2.082500e-02

Joint ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
Cons ci ratio: 7.743020e-02	ci left: 4.686888e-02	ci right 5.066373e-02	k: 2437	n:50000
KS ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
ADAMTS5   50000 perm   14 sec   (3685 perm/sec)   p_kst 1.442000e-02   p_cons 4.874000e-02   p_joint 1.614000e-02

Joint ci ratio: 1.310185e-01	ci left: 1.373609e-02	ci right 1.567793e-02	k: 881	n:60000
Cons ci ratio: 7.093403e-02	ci left: 4.671272e-02	ci right 5.016446e-02	k: 2905	n:60000
KS ci ratio: 1.301230e-01	ci left: 1.392965e-02	ci right 1.588435e-02	k: 893	n:60000
ADAMTS5   60000 perm   17 sec   (3619 perm/sec)   p_kst 1.488333e-02   p_cons 4.841667e-02   p_joint 1.468333e-02

Joint ci ratio: 1.314604e-01	ci left: 1.171771e-02	ci right 1.338020e-02	k: 877	n:70000
Cons ci ratio: 6.559432e-02	ci left: 4.694834e-02	ci right 5.014636e-02	k: 3397	n:70000
KS ci ratio: 1.207648e-01	ci left: 1.393235e-02	ci right 1.573677e-02	k: 1037	n:70000
ADAMTS5   70000 perm   20 sec   (3553 perm/sec)   p_kst 1.481429e-02   p_cons 4.852857e-02   p_joint 1.252857e-02

Joint ci ratio: 1.363562e-01	ci left: 9.527365e-03	ci right 1.093349e-02	k: 817	n:80000
Cons ci ratio: 6.131999e-02	ci left: 4.710777e-02	ci right 5.010008e-02	k: 3887	n:80000
KS ci ratio: 1.137111e-01	ci left: 1.380452e-02	ci right 1.548094e-02	k: 1170	n:80000
ADAMTS5   80000 perm   23 sec   (3498 perm/sec)   p_kst 1.462500e-02   p_cons 4.858750e-02   p_joint 1.021250e-02

Joint ci ratio: 1.299381e-01	ci left: 9.360229e-03	ci right 1.067164e-02	k: 900	n:90000
Cons ci ratio: 5.796646e-02	ci left: 4.695214e-02	ci right 4.976596e-02	k: 4351	n:90000
KS ci ratio: 1.073476e-01	ci left: 1.381567e-02	ci right 1.539362e-02	k: 1313	n:90000
ADAMTS5   90000 perm   26 sec   (3447 perm/sec)   p_kst 1.458889e-02   p_cons 4.834444e-02   p_joint 1.000000e-02

Joint ci ratio: 1.244119e-01	ci left: 9.218082e-03	ci right 1.045060e-02	k: 982	n:100000
Cons ci ratio: 5.506701e-02	ci left: 4.690033e-02	ci right 4.956595e-02	k: 4822	n:100000
KS ci ratio: 1.017329e-01	ci left: 1.388519e-02	ci right 1.538316e-02	k: 1462	n:100000
ADAMTS5   100000 perm   29 sec   (3398 perm/sec)   p_kst 1.462000e-02   p_cons 4.822000e-02   p_joint 9.820000e-03

Joint ci ratio: 1.072858e-01	ci left: 1.134719e-02	ci right 1.264237e-02	k: 1318	n:110000
Cons ci ratio: 5.242808e-02	ci left: 4.709425e-02	ci right 4.963873e-02	k: 5319	n:110000
KS ci ratio: 9.667293e-02	ci left: 1.401481e-02	ci right 1.544730e-02	k: 1619	n:110000
ADAMTS5   110000 perm   33 sec   (3351 perm/sec)   p_kst 1.471818e-02   p_cons 4.835455e-02   p_joint 1.198182e-02

Joint ci ratio: 1.041531e-01	ci left: 1.105865e-02	ci right 1.228178e-02	k: 1399	n:120000
Cons ci ratio: 5.019443e-02	ci left: 4.715134e-02	ci right 4.958721e-02	k: 5803	n:120000
KS ci ratio: 9.288520e-02	ci left: 1.394523e-02	ci right 1.531171e-02	k: 1754	n:120000
ADAMTS5   120000 perm   36 sec   (3304 perm/sec)   p_kst 1.461667e-02   p_cons 4.835833e-02   p_joint 1.165833e-02

Joint ci ratio: 9.356167e-02	ci left: 1.269933e-02	ci right 1.395328e-02	k: 1731	n:130000
Cons ci ratio: 4.818368e-02	ci left: 4.727765e-02	ci right 4.961947e-02	k: 6297	n:130000
KS ci ratio: 8.922338e-02	ci left: 1.397755e-02	ci right 1.529039e-02	k: 1901	n:130000
ADAMTS5   130000 perm   40 sec   (3260 perm/sec)   p_kst 1.462308e-02   p_cons 4.843846e-02   p_joint 1.331538e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS5.22_2825_130000_0.014623_0.048438_0.013315.png
                gene_name: ADAMTS5
               theta_stop: 0.094 
                    nperm: 130000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 8 percent done.
ADAMTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
ADAMTS2   10000 perm   2 sec   (4252 perm/sec)   p_kst 3.696000e-01   p_cons 2.900000e-03   p_joint 3.420000e-02

Joint ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
Cons ci ratio: 4.611327e-01	ci left: 2.773589e-03	ci right 4.475763e-03	k: 71	n:20000
KS ci ratio: 3.748126e-02	ci left: 3.468713e-01	ci right 3.601713e-01	k: 7070	n:20000
ADAMTS2   20000 perm   5 sec   (3894 perm/sec)   p_kst 3.535000e-01   p_cons 3.550000e-03   p_joint 1.435000e-02

Joint ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
Cons ci ratio: 3.680613e-01	ci left: 3.074978e-03	ci right 4.490465e-03	k: 112	n:30000
KS ci ratio: 3.057096e-02	ci left: 3.485863e-01	ci right 3.594419e-01	k: 10620	n:30000
ADAMTS2   30000 perm   8 sec   (3758 perm/sec)   p_kst 3.540000e-01   p_cons 3.733333e-03   p_joint 8.566667e-03

Joint ci ratio: 1.889083e-01	ci left: 9.643388e-03	ci right 1.167859e-02	k: 425	n:40000
Cons ci ratio: 3.355611e-01	ci left: 2.830454e-03	ci right 3.993482e-03	k: 135	n:40000
KS ci ratio: 2.648004e-02	ci left: 3.492371e-01	ci right 3.586341e-01	k: 14157	n:40000
ADAMTS2   40000 perm   11 sec   (3676 perm/sec)   p_kst 3.539250e-01   p_cons 3.375000e-03   p_joint 1.062500e-02

Joint ci ratio: 1.749582e-01	ci left: 9.069876e-03	ci right 1.082772e-02	k: 496	n:50000
Cons ci ratio: 3.113622e-01	ci left: 2.668646e-03	ci right 3.670412e-03	k: 157	n:50000
KS ci ratio: 2.367877e-02	ci left: 3.498469e-01	ci right 3.582501e-01	k: 17702	n:50000
ADAMTS2   50000 perm   14 sec   (3600 perm/sec)   p_kst 3.540400e-01   p_cons 3.140000e-03   p_joint 9.920000e-03

Joint ci ratio: 1.455166e-01	ci left: 1.107982e-02	ci right 1.283453e-02	k: 716	n:60000
Cons ci ratio: 2.788273e-01	ci left: 2.825927e-03	ci right 3.756477e-03	k: 196	n:60000
KS ci ratio: 2.163031e-02	ci left: 3.499064e-01	ci right 3.575744e-01	k: 21224	n:60000
ADAMTS2   60000 perm   17 sec   (3537 perm/sec)   p_kst 3.537333e-01   p_cons 3.266667e-03   p_joint 1.193333e-02

Joint ci ratio: 1.435335e-01	ci left: 9.785660e-03	ci right 1.131246e-02	k: 737	n:70000
Cons ci ratio: 2.558279e-01	ci left: 2.915448e-03	ci right 3.783670e-03	k: 233	n:70000
KS ci ratio: 2.004926e-02	ci left: 3.496583e-01	ci right 3.567539e-01	k: 24724	n:70000
ADAMTS2   70000 perm   20 sec   (3478 perm/sec)   p_kst 3.532000e-01   p_cons 3.328571e-03   p_joint 1.052857e-02

Joint ci ratio: 1.183621e-01	ci left: 1.272388e-02	ci right 1.433668e-02	k: 1081	n:80000
Cons ci ratio: 2.394979e-01	ci left: 2.937944e-03	ci right 3.748734e-03	k: 266	n:80000
KS ci ratio: 1.874931e-02	ci left: 3.500118e-01	ci right 3.566488e-01	k: 28266	n:80000
ADAMTS2   80000 perm   23 sec   (3428 perm/sec)   p_kst 3.533250e-01   p_cons 3.325000e-03   p_joint 1.351250e-02

Joint ci ratio: 1.191228e-01	ci left: 1.118021e-02	ci right 1.260707e-02	k: 1069	n:90000
Cons ci ratio: 2.298179e-01	ci left: 2.852027e-03	ci right 3.602779e-03	k: 289	n:90000
KS ci ratio: 1.769525e-02	ci left: 3.497328e-01	ci right 3.559878e-01	k: 31757	n:90000
ADAMTS2   90000 perm   27 sec   (3381 perm/sec)   p_kst 3.528556e-01   p_cons 3.211111e-03   p_joint 1.187778e-02

Joint ci ratio: 1.191945e-01	ci left: 1.006184e-02	ci right 1.134678e-02	k: 1069	n:100000
Cons ci ratio: 2.154315e-01	ci left: 2.944554e-03	ci right 3.664731e-03	k: 329	n:100000
KS ci ratio: 1.678596e-02	ci left: 3.499275e-01	ci right 3.558610e-01	k: 35289	n:100000
ADAMTS2   100000 perm   30 sec   (3339 perm/sec)   p_kst 3.528900e-01   p_cons 3.290000e-03   p_joint 1.069000e-02

Joint ci ratio: 1.198198e-01	ci left: 9.058649e-03	ci right 1.022197e-02	k: 1059	n:110000
Cons ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
KS ci ratio: 1.602264e-02	ci left: 3.495581e-01	ci right 3.552133e-01	k: 38762	n:110000
ADAMTS2   110000 perm   33 sec   (3292 perm/sec)   p_kst 3.523818e-01   p_cons 3.281818e-03   p_joint 9.627273e-03

Joint ci ratio: 1.145371e-01	ci left: 9.112690e-03	ci right 1.022787e-02	k: 1159	n:120000
Cons ci ratio: 1.981733e-01	ci left: 2.927941e-03	ci right 3.579764e-03	k: 389	n:120000
KS ci ratio: 1.535983e-02	ci left: 3.491059e-01	ci right 3.545179e-01	k: 42217	n:120000
ADAMTS2   120000 perm   37 sec   (3249 perm/sec)   p_kst 3.518083e-01   p_cons 3.241667e-03   p_joint 9.658333e-03

Joint ci ratio: 1.204260e-01	ci left: 7.597512e-03	ci right 8.578467e-03	k: 1050	n:130000
Cons ci ratio: 1.898361e-01	ci left: 2.958877e-03	ci right 3.586680e-03	k: 424	n:130000
KS ci ratio: 1.477098e-02	ci left: 3.487890e-01	ci right 3.539869e-01	k: 45680	n:130000
ADAMTS2   130000 perm   41 sec   (3207 perm/sec)   p_kst 3.513846e-01   p_cons 3.261538e-03   p_joint 8.076923e-03

Joint ci ratio: 1.208673e-01	ci left: 7.006212e-03	ci right 7.914367e-03	k: 1043	n:140000
Cons ci ratio: 1.830697e-01	ci left: 2.965435e-03	ci right 3.569714e-03	k: 456	n:140000
KS ci ratio: 1.424370e-02	ci left: 3.485636e-01	ci right 3.535711e-01	k: 49149	n:140000
ADAMTS2   140000 perm   44 sec   (3168 perm/sec)   p_kst 3.510643e-01   p_cons 3.257143e-03   p_joint 7.450000e-03

Joint ci ratio: 1.189067e-01	ci left: 6.765416e-03	ci right 7.627131e-03	k: 1078	n:150000
Cons ci ratio: 1.788226e-01	ci left: 2.907755e-03	ci right 3.485046e-03	k: 478	n:150000
KS ci ratio: 1.377739e-02	ci left: 3.480983e-01	ci right 3.529341e-01	k: 52577	n:150000
ADAMTS2   150000 perm   48 sec   (3130 perm/sec)   p_kst 3.505133e-01   p_cons 3.186667e-03   p_joint 7.186667e-03

Joint ci ratio: 1.076952e-01	ci left: 7.770005e-03	ci right 8.660454e-03	k: 1313	n:160000
Cons ci ratio: 1.734738e-01	ci left: 2.905254e-03	ci right 3.462989e-03	k: 508	n:160000
KS ci ratio: 1.335974e-02	ci left: 3.475003e-01	ci right 3.521802e-01	k: 55974	n:160000
ADAMTS2   160000 perm   52 sec   (3092 perm/sec)   p_kst 3.498375e-01   p_cons 3.175000e-03   p_joint 8.206250e-03

Joint ci ratio: 1.056349e-01	ci left: 7.610634e-03	ci right 8.465095e-03	k: 1365	n:170000
Cons ci ratio: 1.703305e-01	ci left: 2.841305e-03	ci right 3.375863e-03	k: 527	n:170000
KS ci ratio: 1.295556e-02	ci left: 3.477558e-01	ci right 3.522964e-01	k: 59504	n:170000
ADAMTS2   170000 perm   56 sec   (3056 perm/sec)   p_kst 3.500235e-01   p_cons 3.100000e-03   p_joint 8.029412e-03

Joint ci ratio: 1.088347e-01	ci left: 6.765946e-03	ci right 7.550053e-03	k: 1287	n:180000
Cons ci ratio: 1.700226e-01	ci left: 2.694075e-03	ci right 3.199922e-03	k: 529	n:180000
KS ci ratio: 1.260059e-02	ci left: 3.474578e-01	ci right 3.518692e-01	k: 62939	n:180000
ADAMTS2   180000 perm   60 sec   (3021 perm/sec)   p_kst 3.496611e-01   p_cons 2.938889e-03   p_joint 7.150000e-03

Joint ci ratio: 1.072735e-01	ci left: 6.604408e-03	ci right 7.358120e-03	k: 1325	n:190000
Cons ci ratio: 1.676729e-01	ci left: 2.627885e-03	ci right 3.113796e-03	k: 544	n:190000
KS ci ratio: 1.226503e-02	ci left: 3.474976e-01	ci right 3.517912e-01	k: 66432	n:190000
ADAMTS2   190000 perm   64 sec   (2987 perm/sec)   p_kst 3.496421e-01   p_cons 2.863158e-03   p_joint 6.973684e-03

Joint ci ratio: 1.047005e-01	ci left: 6.595438e-03	ci right 7.328961e-03	k: 1391	n:200000
Cons ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
KS ci ratio: 1.195401e-02	ci left: 3.475698e-01	ci right 3.517546e-01	k: 69932	n:200000
ADAMTS2   200000 perm   68 sec   (2951 perm/sec)   p_kst 3.496600e-01   p_cons 2.865000e-03   p_joint 6.955000e-03

Joint ci ratio: 1.023749e-01	ci left: 6.578237e-03	ci right 7.292618e-03	k: 1455	n:210000
Cons ci ratio: 1.595377e-01	ci left: 2.637932e-03	ci right 3.099769e-03	k: 601	n:210000
KS ci ratio: 1.167309e-02	ci left: 3.473415e-01	ci right 3.514246e-01	k: 73370	n:210000
ADAMTS2   210000 perm   72 sec   (2919 perm/sec)   p_kst 3.493810e-01   p_cons 2.861905e-03   p_joint 6.928571e-03

Joint ci ratio: 9.986745e-02	ci left: 6.607088e-03	ci right 7.305998e-03	k: 1529	n:220000
Cons ci ratio: 1.560767e-01	ci left: 2.635907e-03	ci right 3.086441e-03	k: 628	n:220000
KS ci ratio: 1.140309e-02	ci left: 3.474528e-01	ci right 3.514421e-01	k: 76878	n:220000
ADAMTS2   220000 perm   76 sec   (2885 perm/sec)   p_kst 3.494455e-01   p_cons 2.854545e-03   p_joint 6.950000e-03

Joint ci ratio: 8.802971e-02	ci left: 8.171377e-03	ci right 8.928042e-03	k: 1965	n:230000
Cons ci ratio: 1.519054e-01	ci left: 2.667616e-03	ci right 3.110276e-03	k: 663	n:230000
KS ci ratio: 1.115762e-02	ci left: 3.472862e-01	ci right 3.511871e-01	k: 80324	n:230000
ADAMTS2   230000 perm   81 sec   (2854 perm/sec)   p_kst 3.492348e-01   p_cons 2.882609e-03   p_joint 8.543478e-03

Joint ci ratio: 8.181307e-02	ci left: 9.087184e-03	ci right 9.866398e-03	k: 2273	n:240000
Cons ci ratio: 1.489087e-01	ci left: 2.664732e-03	ci right 3.097412e-03	k: 690	n:240000
KS ci ratio: 1.092233e-02	ci left: 3.473425e-01	ci right 3.511612e-01	k: 83820	n:240000
ADAMTS2   240000 perm   85 sec   (2822 perm/sec)   p_kst 3.492500e-01   p_cons 2.875000e-03   p_joint 9.470833e-03

Joint ci ratio: 8.202918e-02	ci left: 8.680524e-03	ci right 9.426925e-03	k: 2262	n:250000
Cons ci ratio: 1.462871e-01	ci left: 2.654448e-03	ci right 3.077208e-03	k: 715	n:250000
KS ci ratio: 1.069521e-02	ci left: 3.476547e-01	ci right 3.513968e-01	k: 87381	n:250000
ADAMTS2   250000 perm   90 sec   (2792 perm/sec)   p_kst 3.495240e-01   p_cons 2.860000e-03   p_joint 9.048000e-03

Joint ci ratio: 8.432900e-02	ci left: 7.894582e-03	ci right 8.593370e-03	k: 2142	n:260000
Cons ci ratio: 1.438966e-01	ci left: 2.641309e-03	ci right 3.054512e-03	k: 739	n:260000
KS ci ratio: 1.048471e-02	ci left: 3.478130e-01	ci right 3.514827e-01	k: 90908	n:260000
ADAMTS2   260000 perm   94 sec   (2762 perm/sec)   p_kst 3.496462e-01   p_cons 2.842308e-03   p_joint 8.238462e-03

Joint ci ratio: 8.502452e-02	ci left: 7.478863e-03	ci right 8.146582e-03	k: 2108	n:270000
Cons ci ratio: 1.413415e-01	ci left: 2.639915e-03	ci right 3.044948e-03	k: 766	n:270000
KS ci ratio: 1.028272e-02	ci left: 3.481119e-01	ci right 3.517136e-01	k: 94476	n:270000
ADAMTS2   270000 perm   99 sec   (2733 perm/sec)   p_kst 3.499111e-01   p_cons 2.837037e-03   p_joint 7.807407e-03

Joint ci ratio: 8.513822e-02	ci left: 7.194239e-03	ci right 7.837447e-03	k: 2103	n:280000
Cons ci ratio: 1.398931e-01	ci left: 2.600761e-03	ci right 2.995356e-03	k: 782	n:280000
KS ci ratio: 1.010220e-02	ci left: 3.479299e-01	ci right 3.514661e-01	k: 97915	n:280000
ADAMTS2   280000 perm   104 sec   (2704 perm/sec)   p_kst 3.496964e-01   p_cons 2.792857e-03   p_joint 7.510714e-03

Joint ci ratio: 8.391279e-02	ci left: 7.155429e-03	ci right 7.785508e-03	k: 2165	n:290000
Cons ci ratio: 1.376273e-01	ci left: 2.597622e-03	ci right 2.984834e-03	k: 808	n:290000
KS ci ratio: 9.925974e-03	ci left: 3.479848e-01	ci right 3.514595e-01	k: 101419	n:290000
ADAMTS2   290000 perm   108 sec   (2677 perm/sec)   p_kst 3.497207e-01   p_cons 2.786207e-03   p_joint 7.465517e-03

Joint ci ratio: 8.266404e-02	ci left: 7.132329e-03	ci right 7.750577e-03	k: 2231	n:300000
Cons ci ratio: 1.347418e-01	ci left: 2.623729e-03	ci right 3.005976e-03	k: 843	n:300000
KS ci ratio: 9.247882e-03	ci left: 3.728409e-01	ci right 3.763082e-01	k: 112372	n:300000
ADAMTS2   300000 perm   113 sec   (2649 perm/sec)   p_kst 3.745733e-01   p_cons 2.810000e-03   p_joint 7.436667e-03

Joint ci ratio: 8.136249e-02	ci left: 7.129748e-03	ci right 7.737579e-03	k: 2303	n:310000
Cons ci ratio: 1.324847e-01	ci left: 2.629514e-03	ci right 3.005682e-03	k: 872	n:310000
KS ci ratio: 9.093728e-03	ci left: 3.730633e-01	ci right 3.764745e-01	k: 116178	n:310000
ADAMTS2   310000 perm   118 sec   (2623 perm/sec)   p_kst 3.747677e-01   p_cons 2.812903e-03   p_joint 7.429032e-03

Joint ci ratio: 7.554580e-02	ci left: 8.028417e-03	ci right 8.661785e-03	k: 2669	n:320000
Cons ci ratio: 1.304100e-01	ci left: 2.631965e-03	ci right 3.002130e-03	k: 900	n:320000
KS ci ratio: 8.951448e-03	ci left: 3.730412e-01	ci right 3.763986e-01	k: 119910	n:320000
ADAMTS2   320000 perm   123 sec   (2596 perm/sec)   p_kst 3.747187e-01   p_cons 2.812500e-03   p_joint 8.340625e-03

Joint ci ratio: 7.499118e-02	ci left: 7.904044e-03	ci right 8.522821e-03	k: 2709	n:330000
Cons ci ratio: 1.339658e-01	ci left: 2.414475e-03	ci right 2.764048e-03	k: 853	n:330000
KS ci ratio: 8.813137e-03	ci left: 3.731541e-01	ci right 3.764603e-01	k: 123686	n:330000
ADAMTS2   330000 perm   128 sec   (2571 perm/sec)   p_kst 3.748061e-01   p_cons 2.584848e-03   p_joint 8.209091e-03

Joint ci ratio: 6.943094e-02	ci left: 8.965622e-03	ci right 9.613372e-03	k: 3157	n:340000
Cons ci ratio: 1.313745e-01	ci left: 2.440144e-03	ci right 2.786067e-03	k: 887	n:340000
KS ci ratio: 8.914157e-03	ci left: 3.609367e-01	ci right 3.641715e-01	k: 123268	n:340000
ADAMTS2   340000 perm   134 sec   (2545 perm/sec)   p_kst 3.625529e-01   p_cons 2.608824e-03   p_joint 9.285294e-03

Joint ci ratio: 6.944024e-02	ci left: 8.709421e-03	ci right 9.338748e-03	k: 3157	n:350000
Cons ci ratio: 1.287880e-01	ci left: 2.469938e-03	ci right 2.812665e-03	k: 923	n:350000
KS ci ratio: 8.784507e-03	ci left: 3.610327e-01	ci right 3.642210e-01	k: 126919	n:350000
ADAMTS2   350000 perm   139 sec   (2520 perm/sec)   p_kst 3.626257e-01   p_cons 2.637143e-03   p_joint 9.020000e-03

Joint ci ratio: 6.864225e-02	ci left: 8.669493e-03	ci right 9.288449e-03	k: 3231	n:360000
Cons ci ratio: 1.272151e-01	ci left: 2.463171e-03	ci right 2.800469e-03	k: 946	n:360000
KS ci ratio: 8.655518e-03	ci left: 3.613817e-01	ci right 3.645260e-01	k: 130663	n:360000
ADAMTS2   360000 perm   144 sec   (2496 perm/sec)   p_kst 3.629528e-01   p_cons 2.627778e-03   p_joint 8.975000e-03

Joint ci ratio: 6.869355e-02	ci left: 8.424521e-03	ci right 9.026454e-03	k: 3227	n:370000
Cons ci ratio: 1.258285e-01	ci left: 2.451559e-03	ci right 2.783334e-03	k: 967	n:370000
KS ci ratio: 8.539774e-03	ci left: 3.612937e-01	ci right 3.643949e-01	k: 134252	n:370000
ADAMTS2   370000 perm   150 sec   (2472 perm/sec)   p_kst 3.628432e-01   p_cons 2.613514e-03   p_joint 8.721622e-03

Joint ci ratio: 6.457185e-02	ci left: 9.294992e-03	ci right 9.917783e-03	k: 3649	n:380000
Cons ci ratio: 1.240469e-01	ci left: 2.458426e-03	ci right 2.786074e-03	k: 995	n:380000
KS ci ratio: 8.630247e-03	ci left: 3.503604e-01	ci right 3.533998e-01	k: 133714	n:380000
ADAMTS2   380000 perm   155 sec   (2450 perm/sec)   p_kst 3.518789e-01   p_cons 2.618421e-03   p_joint 9.602632e-03

Joint ci ratio: 6.441973e-02	ci left: 9.102039e-03	ci right 9.710411e-03	k: 3667	n:390000
Cons ci ratio: 1.219811e-01	ci left: 2.479888e-03	ci right 2.804495e-03	k: 1029	n:390000
KS ci ratio: 8.518109e-03	ci left: 3.504215e-01	ci right 3.534217e-01	k: 137249	n:390000
ADAMTS2   390000 perm   161 sec   (2427 perm/sec)   p_kst 3.519205e-01   p_cons 2.638462e-03   p_joint 9.402564e-03

Joint ci ratio: 6.350765e-02	ci left: 9.135255e-03	ci right 9.736884e-03	k: 3773	n:400000
Cons ci ratio: 1.201285e-01	ci left: 2.495469e-03	ci right 2.816803e-03	k: 1061	n:400000
KS ci ratio: 8.412906e-03	ci left: 3.503350e-01	ci right 3.532972e-01	k: 140726	n:400000
ADAMTS2   400000 perm   166 sec   (2404 perm/sec)   p_kst 3.518150e-01   p_cons 2.652500e-03   p_joint 9.432500e-03

Joint ci ratio: 6.309454e-02	ci left: 9.032449e-03	ci right 9.623297e-03	k: 3823	n:410000
Cons ci ratio: 1.184664e-01	ci left: 2.505592e-03	ci right 2.823452e-03	k: 1091	n:410000
KS ci ratio: 8.312307e-03	ci left: 3.502090e-01	ci right 3.531346e-01	k: 144185	n:410000
ADAMTS2   410000 perm   172 sec   (2383 perm/sec)   p_kst 3.516707e-01   p_cons 2.660976e-03   p_joint 9.324390e-03

Joint ci ratio: 6.481698e-02	ci left: 8.353405e-03	ci right 8.915310e-03	k: 3625	n:420000
Cons ci ratio: 1.175031e-01	ci left: 2.487526e-03	ci right 2.800350e-03	k: 1109	n:420000
KS ci ratio: 8.214502e-03	ci left: 3.501297e-01	ci right 3.530200e-01	k: 147661	n:420000
ADAMTS2   420000 perm   178 sec   (2362 perm/sec)   p_kst 3.515738e-01   p_cons 2.640476e-03   p_joint 8.630952e-03

Joint ci ratio: 6.135958e-02	ci left: 9.113726e-03	ci right 9.692914e-03	k: 4042	n:430000
Cons ci ratio: 1.160995e-01	ci left: 2.490633e-03	ci right 2.799850e-03	k: 1136	n:430000
KS ci ratio: 8.119613e-03	ci left: 3.500798e-01	ci right 3.529362e-01	k: 151148	n:430000
ADAMTS2   430000 perm   184 sec   (2341 perm/sec)   p_kst 3.515070e-01   p_cons 2.641860e-03   p_joint 9.400000e-03

Joint ci ratio: 6.121357e-02	ci left: 8.951331e-03	ci right 9.518797e-03	k: 4062	n:440000
Cons ci ratio: 1.148440e-01	ci left: 2.489205e-03	ci right 2.794676e-03	k: 1161	n:440000
KS ci ratio: 8.027299e-03	ci left: 3.500687e-01	ci right 3.528924e-01	k: 154651	n:440000
ADAMTS2   440000 perm   190 sec   (2321 perm/sec)   p_kst 3.514795e-01   p_cons 2.638636e-03   p_joint 9.231818e-03

Joint ci ratio: 6.265985e-02	ci left: 8.351962e-03	ci right 8.894393e-03	k: 3879	n:450000
Cons ci ratio: 1.138208e-01	ci left: 2.479221e-03	ci right 2.780574e-03	k: 1182	n:450000
KS ci ratio: 7.938411e-03	ci left: 3.500383e-01	ci right 3.528303e-01	k: 158145	n:450000
ADAMTS2   450000 perm   196 sec   (2301 perm/sec)   p_kst 3.514333e-01   p_cons 2.626667e-03   p_joint 8.620000e-03

Joint ci ratio: 6.190596e-02	ci left: 8.373706e-03	ci right 8.910772e-03	k: 3974	n:460000
Cons ci ratio: 1.125436e-01	ci left: 2.482359e-03	ci right 2.780483e-03	k: 1209	n:460000
KS ci ratio: 7.853498e-03	ci left: 3.499464e-01	ci right 3.527077e-01	k: 161610	n:460000
ADAMTS2   460000 perm   202 sec   (2281 perm/sec)   p_kst 3.513261e-01   p_cons 2.628261e-03   p_joint 8.639130e-03

Joint ci ratio: 6.229213e-02	ci left: 8.094964e-03	ci right 8.617507e-03	k: 3926	n:470000
Cons ci ratio: 1.111285e-01	ci left: 2.493656e-03	ci right 2.789124e-03	k: 1240	n:470000
KS ci ratio: 7.769511e-03	ci left: 3.499606e-01	ci right 3.526923e-01	k: 165123	n:470000
ADAMTS2   470000 perm   208 sec   (2262 perm/sec)   p_kst 3.513255e-01   p_cons 2.638298e-03   p_joint 8.353191e-03

Joint ci ratio: 6.067507e-02	ci left: 8.359179e-03	ci right 8.884279e-03	k: 4137	n:480000
Cons ci ratio: 1.097655e-01	ci left: 2.504505e-03	ci right 2.797383e-03	k: 1271	n:480000
KS ci ratio: 7.683807e-03	ci left: 3.502325e-01	ci right 3.529360e-01	k: 168760	n:480000
ADAMTS2   480000 perm   214 sec   (2244 perm/sec)   p_kst 3.515833e-01   p_cons 2.647917e-03   p_joint 8.618750e-03

Joint ci ratio: 6.001126e-02	ci left: 8.373507e-03	ci right 8.893553e-03	k: 4229	n:490000
Cons ci ratio: 1.087026e-01	ci left: 2.503019e-03	ci right 2.792708e-03	k: 1296	n:490000
KS ci ratio: 7.604753e-03	ci left: 3.502609e-01	ci right 3.529367e-01	k: 172283	n:490000
ADAMTS2   490000 perm   220 sec   (2224 perm/sec)   p_kst 3.515980e-01   p_cons 2.644898e-03   p_joint 8.630612e-03

Joint ci ratio: 6.031923e-02	ci left: 8.123269e-03	ci right 8.630452e-03	k: 4187	n:500000
Cons ci ratio: 1.078748e-01	ci left: 2.491874e-03	ci right 2.777938e-03	k: 1316	n:500000
KS ci ratio: 7.530138e-03	ci left: 3.501645e-01	ci right 3.528132e-01	k: 175744	n:500000
ADAMTS2   500000 perm   227 sec   (2205 perm/sec)   p_kst 3.514880e-01   p_cons 2.632000e-03   p_joint 8.374000e-03

Joint ci ratio: 5.992160e-02	ci left: 8.072136e-03	ci right 8.572689e-03	k: 4243	n:510000
Cons ci ratio: 1.066267e-01	ci left: 2.502168e-03	ci right 2.785882e-03	k: 1347	n:510000
KS ci ratio: 7.457709e-03	ci left: 3.500700e-01	ci right 3.526924e-01	k: 179204	n:510000
ADAMTS2   510000 perm   233 sec   (2188 perm/sec)   p_kst 3.513804e-01   p_cons 2.641176e-03   p_joint 8.319608e-03

Joint ci ratio: 5.709806e-02	ci left: 8.726131e-03	ci right 9.240901e-03	k: 4670	n:520000
Cons ci ratio: 1.056516e-01	ci left: 2.500850e-03	ci right 2.781660e-03	k: 1372	n:520000
KS ci ratio: 7.384338e-03	ci left: 3.501638e-01	ci right 3.527610e-01	k: 182760	n:520000
ADAMTS2   520000 perm   240 sec   (2170 perm/sec)   p_kst 3.514615e-01   p_cons 2.638462e-03   p_joint 8.980769e-03

Joint ci ratio: 5.835095e-02	ci left: 8.196947e-03	ci right 8.691467e-03	k: 4474	n:530000
Cons ci ratio: 1.044410e-01	ci left: 2.512456e-03	ci right 2.791138e-03	k: 1404	n:530000
KS ci ratio: 7.313514e-03	ci left: 3.502277e-01	ci right 3.528003e-01	k: 186302	n:530000
ADAMTS2   530000 perm   246 sec   (2153 perm/sec)   p_kst 3.515132e-01   p_cons 2.649057e-03   p_joint 8.441509e-03

Joint ci ratio: 5.817231e-02	ci left: 8.096236e-03	ci right 8.583135e-03	k: 4502	n:540000
Cons ci ratio: 1.035969e-01	ci left: 2.507413e-03	ci right 2.783151e-03	k: 1427	n:540000
KS ci ratio: 7.244043e-03	ci left: 3.503301e-01	ci right 3.528789e-01	k: 189866	n:540000
ADAMTS2   540000 perm   253 sec   (2136 perm/sec)   p_kst 3.516037e-01   p_cons 2.642593e-03   p_joint 8.337037e-03

Joint ci ratio: 5.775155e-02	ci left: 8.067289e-03	ci right 8.548821e-03	k: 4568	n:550000
Cons ci ratio: 1.026665e-01	ci left: 2.507877e-03	ci right 2.781040e-03	k: 1453	n:550000
KS ci ratio: 7.176313e-03	ci left: 3.504416e-01	ci right 3.529673e-01	k: 193437	n:550000
ADAMTS2   550000 perm   260 sec   (2119 perm/sec)   p_kst 3.517036e-01   p_cons 2.641818e-03   p_joint 8.305455e-03

Joint ci ratio: 5.725266e-02	ci left: 8.064033e-03	ci right 8.541075e-03	k: 4648	n:560000
Cons ci ratio: 1.018297e-01	ci left: 2.504855e-03	ci right 2.775332e-03	k: 1477	n:560000
KS ci ratio: 7.112286e-03	ci left: 3.504314e-01	ci right 3.529344e-01	k: 196942	n:560000
ADAMTS2   560000 perm   266 sec   (2102 perm/sec)   p_kst 3.516821e-01   p_cons 2.637500e-03   p_joint 8.300000e-03

Joint ci ratio: 5.677859e-02	ci left: 8.057449e-03	ci right 8.530025e-03	k: 4726	n:570000
Cons ci ratio: 1.008114e-01	ci left: 2.512208e-03	ci right 2.780606e-03	k: 1507	n:570000
KS ci ratio: 7.049454e-03	ci left: 3.504533e-01	ci right 3.529342e-01	k: 200465	n:570000
ADAMTS2   570000 perm   273 sec   (2085 perm/sec)   p_kst 3.516930e-01   p_cons 2.643860e-03   p_joint 8.291228e-03

Joint ci ratio: 5.666797e-02	ci left: 7.950810e-03	ci right 8.416192e-03	k: 4745	n:580000
Cons ci ratio: 9.998617e-02	ci left: 2.510915e-03	ci right 2.776850e-03	k: 1532	n:580000
KS ci ratio: 6.988999e-03	ci left: 3.504262e-01	ci right 3.528856e-01	k: 203960	n:580000
ADAMTS2   580000 perm   280 sec   (2069 perm/sec)   p_kst 3.516552e-01   p_cons 2.641379e-03   p_joint 8.181034e-03

Outputting figure to mutsig2_images.part000000000003/ADAMTS2.20_3799_580000_0.35166_0.0026414_0.008181.png
                gene_name: ADAMTS2
               theta_stop: 0.100 
                    nperm: 580000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0084 

Current progress: 9 percent done.
ACSM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
ACSM2B   10000 perm   2 sec   (5291 perm/sec)   p_kst 1.410000e-02   p_cons 5.443000e-01   p_joint 3.830000e-02

Joint ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
Cons ci ratio: 2.441419e-02	ci left: 5.561921e-01	ci right 5.699895e-01	k: 11262	n:20000
KS ci ratio: 2.434210e-01	ci left: 1.124125e-02	ci right 1.440275e-02	k: 255	n:20000
ACSM2B   20000 perm   4 sec   (4816 perm/sec)   p_kst 1.275000e-02   p_cons 5.631000e-01   p_joint 2.710000e-02

Joint ci ratio: 1.414321e-01	ci left: 2.319840e-02	ci right 2.676107e-02	k: 748	n:30000
Cons ci ratio: 1.980116e-02	ci left: 5.607693e-01	ci right 5.720178e-01	k: 16992	n:30000
KS ci ratio: 1.934640e-01	ci left: 1.219299e-02	ci right 1.483580e-02	k: 404	n:30000
ACSM2B   30000 perm   6 sec   (4627 perm/sec)   p_kst 1.346667e-02   p_cons 5.664000e-01   p_joint 2.493333e-02

Joint ci ratio: 9.671361e-02	ci left: 3.753892e-02	ci right 4.137831e-02	k: 1577	n:40000
Cons ci ratio: 1.706485e-02	ci left: 5.639293e-01	ci right 5.736607e-01	k: 22752	n:40000
KS ci ratio: 1.664551e-01	ci left: 1.253581e-02	ci right 1.483559e-02	k: 546	n:40000
ACSM2B   40000 perm   9 sec   (4500 perm/sec)   p_kst 1.365000e-02   p_cons 5.688000e-01   p_joint 3.942500e-02

Joint ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
Cons ci ratio: 1.495814e-02	ci left: 5.743375e-01	ci right 5.830133e-01	k: 28934	n:50000
KS ci ratio: 1.475480e-01	ci left: 1.289210e-02	ci right 1.496490e-02	k: 695	n:50000
ACSM2B   50000 perm   11 sec   (4391 perm/sec)   p_kst 1.390000e-02   p_cons 5.786800e-01   p_joint 3.048000e-02

Joint ci ratio: 9.279383e-02	ci left: 2.754145e-02	ci right 3.023771e-02	k: 1732	n:60000
Cons ci ratio: 1.366555e-02	ci left: 5.743366e-01	ci right 5.822559e-01	k: 34698	n:60000
KS ci ratio: 1.353680e-01	ci left: 1.284956e-02	ci right 1.473123e-02	k: 826	n:60000
ACSM2B   60000 perm   14 sec   (4283 perm/sec)   p_kst 1.376667e-02   p_cons 5.783000e-01   p_joint 2.886667e-02

Joint ci ratio: 8.205798e-02	ci left: 3.027440e-02	ci right 3.287890e-02	k: 2209	n:70000
Cons ci ratio: 1.329857e-02	ci left: 5.501225e-01	ci right 5.575016e-01	k: 38767	n:70000
KS ci ratio: 1.227608e-01	ci left: 1.347508e-02	ci right 1.525122e-02	k: 1004	n:70000
ACSM2B   70000 perm   17 sec   (4193 perm/sec)   p_kst 1.434286e-02   p_cons 5.538143e-01   p_joint 3.155714e-02

Joint ci ratio: 7.787507e-02	ci left: 2.950316e-02	ci right 3.190603e-02	k: 2455	n:80000
Cons ci ratio: 1.245580e-02	ci left: 5.497218e-01	ci right 5.566244e-01	k: 44254	n:80000
KS ci ratio: 1.175390e-01	ci left: 1.290592e-02	ci right 1.452963e-02	k: 1096	n:80000
ACSM2B   80000 perm   19 sec   (4121 perm/sec)   p_kst 1.370000e-02   p_cons 5.531750e-01   p_joint 3.068750e-02

Joint ci ratio: 7.017244e-02	ci left: 3.233392e-02	ci right 3.469627e-02	k: 3015	n:90000
Cons ci ratio: 1.171913e-02	ci left: 5.509454e-01	ci right 5.574511e-01	k: 49878	n:90000
KS ci ratio: 1.108226e-01	ci left: 1.295071e-02	ci right 1.448087e-02	k: 1233	n:90000
ACSM2B   90000 perm   22 sec   (4051 perm/sec)   p_kst 1.370000e-02   p_cons 5.542000e-01   p_joint 3.350000e-02

Joint ci ratio: 7.409097e-02	ci left: 2.622018e-02	ci right 2.824737e-02	k: 2722	n:100000
Cons ci ratio: 1.111528e-02	ci left: 5.512228e-01	ci right 5.573940e-01	k: 55431	n:100000
KS ci ratio: 1.058863e-01	ci left: 1.280362e-02	ci right 1.424480e-02	k: 1351	n:100000
ACSM2B   100000 perm   25 sec   (3978 perm/sec)   p_kst 1.351000e-02   p_cons 5.543100e-01   p_joint 2.722000e-02

Joint ci ratio: 7.034540e-02	ci left: 2.648790e-02	ci right 2.842803e-02	k: 3019	n:110000
Cons ci ratio: 1.057525e-02	ci left: 5.524302e-01	ci right 5.583124e-01	k: 61091	n:110000
KS ci ratio: 1.011035e-01	ci left: 1.279974e-02	ci right 1.417154e-02	k: 1482	n:110000
ACSM2B   110000 perm   28 sec   (3910 perm/sec)   p_kst 1.347273e-02   p_cons 5.553727e-01   p_joint 2.744545e-02

Joint ci ratio: 6.815839e-02	ci left: 2.590993e-02	ci right 2.774637e-02	k: 3218	n:120000
Cons ci ratio: 1.012995e-02	ci left: 5.523161e-01	ci right 5.579479e-01	k: 66616	n:120000
KS ci ratio: 9.610368e-02	ci left: 1.301737e-02	ci right 1.433962e-02	k: 1640	n:120000
ACSM2B   120000 perm   31 sec   (3843 perm/sec)   p_kst 1.366667e-02   p_cons 5.551333e-01   p_joint 2.681667e-02

Outputting figure to mutsig2_images.part000000000003/ACSM2B.13_1786_120000_0.013667_0.55513_0.026817.png
                gene_name: ACSM2B
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 10 percent done.
ADAM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
Cons ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
KS ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
ADAM19   10000 perm   2 sec   (4945 perm/sec)   p_kst 8.578000e-01   p_cons 9.960000e-02   p_joint 2.994000e-01

Joint ci ratio: 5.522945e-02	ci left: 1.956132e-01	ci right 2.067738e-01	k: 4023	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 1.124947e-02	ci left: 8.536939e-01	ci right 8.634016e-01	k: 17172	n:20000
ADAM19   20000 perm   4 sec   (4507 perm/sec)   p_kst 8.586000e-01   p_cons 9.340000e-02   p_joint 2.011500e-01

Outputting figure to mutsig2_images.part000000000003/ADAM19.13_2849_20000_0.8586_0.0934_0.20115.png
                gene_name: ADAM19
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
ADAMTS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
KS ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
ADAMTS19   10000 perm   2 sec   (4517 perm/sec)   p_kst 2.743000e-01   p_cons 3.506000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS19.13_3716_10000_0.2743_0.3506_0.4564.png
                gene_name: ADAMTS19
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 13 percent done.
ADAMTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
Cons ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
ADAMTS3   10000 perm   2 sec   (4630 perm/sec)   p_kst 4.924000e-01   p_cons 1.496000e-01   p_joint 2.640000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS3.13_3706_10000_0.4924_0.1496_0.264.png
                gene_name: ADAMTS3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 14 percent done.
ADAMTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
Cons ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KS ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
ADAMTS1   10000 perm   2 sec   (4701 perm/sec)   p_kst 7.150000e-02   p_cons 9.630000e-02   p_joint 8.250000e-02

Joint ci ratio: 1.331252e-01	ci left: 3.877774e-02	ci right 4.435654e-02	k: 830	n:20000
Cons ci ratio: 8.542683e-02	ci left: 9.116655e-02	ci right 9.935156e-02	k: 1904	n:20000
KS ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
ADAMTS1   20000 perm   5 sec   (4309 perm/sec)   p_kst 7.400000e-02   p_cons 9.520000e-02   p_joint 4.150000e-02

Joint ci ratio: 9.228204e-02	ci left: 5.410936e-02	ci right 5.937689e-02	k: 1701	n:30000
Cons ci ratio: 7.046895e-02	ci left: 9.019560e-02	ci right 9.681670e-02	k: 2804	n:30000
KS ci ratio: 7.994218e-02	ci left: 7.122611e-02	ci right 7.719000e-02	k: 2225	n:30000
ADAMTS1   30000 perm   7 sec   (4137 perm/sec)   p_kst 7.416667e-02   p_cons 9.346667e-02   p_joint 5.670000e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS1.12_2940_30000_0.074167_0.093467_0.0567.png
                gene_name: ADAMTS1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 15 percent done.
ADAMTS17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
Cons ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
ADAMTS17   10000 perm   2 sec   (4740 perm/sec)   p_kst 2.090000e-02   p_cons 1.986000e-01   p_joint 6.050000e-02

Joint ci ratio: 1.405228e-01	ci left: 3.481282e-02	ci right 4.012274e-02	k: 748	n:20000
Cons ci ratio: 5.602359e-02	ci left: 1.911114e-01	ci right 2.021769e-01	k: 3932	n:20000
KS ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
ADAMTS17   20000 perm   5 sec   (4339 perm/sec)   p_kst 2.015000e-02   p_cons 1.966000e-01   p_joint 3.740000e-02

Joint ci ratio: 1.006797e-01	ci left: 4.567332e-02	ci right 5.054801e-02	k: 1442	n:30000
Cons ci ratio: 4.577949e-02	ci left: 1.918843e-01	ci right 2.009079e-01	k: 5891	n:30000
KS ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
ADAMTS17   30000 perm   7 sec   (4180 perm/sec)   p_kst 1.963333e-02   p_cons 1.963667e-01   p_joint 4.806667e-02

Joint ci ratio: 1.040766e-01	ci left: 3.246471e-02	ci right 3.605332e-02	k: 1369	n:40000
Cons ci ratio: 3.970605e-02	ci left: 1.920202e-01	ci right 1.998240e-01	k: 7836	n:40000
KS ci ratio: 1.394381e-01	ci left: 1.802253e-02	ci right 2.074787e-02	k: 774	n:40000
ADAMTS17   40000 perm   10 sec   (4080 perm/sec)   p_kst 1.935000e-02   p_cons 1.959000e-01   p_joint 3.422500e-02

Joint ci ratio: 8.815670e-02	ci left: 3.636057e-02	ci right 3.973334e-02	k: 1901	n:50000
Cons ci ratio: 3.537114e-02	ci left: 1.937002e-01	ci right 2.006950e-01	k: 9859	n:50000
KS ci ratio: 1.269230e-01	ci left: 1.753064e-02	ci right 1.992570e-02	k: 935	n:50000
ADAMTS17   50000 perm   13 sec   (3983 perm/sec)   p_kst 1.870000e-02   p_cons 1.971800e-01   p_joint 3.802000e-02

Joint ci ratio: 8.451122e-02	ci left: 3.315182e-02	ci right 3.609342e-02	k: 2076	n:60000
Cons ci ratio: 3.235404e-02	ci left: 1.933767e-01	ci right 1.997527e-01	k: 11793	n:60000
KS ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
ADAMTS17   60000 perm   15 sec   (3906 perm/sec)   p_kst 1.911667e-02   p_cons 1.965500e-01   p_joint 3.460000e-02

Joint ci ratio: 7.899102e-02	ci left: 3.264164e-02	ci right 3.534003e-02	k: 2378	n:70000
Cons ci ratio: 2.847591e-02	ci left: 2.100002e-01	ci right 2.160808e-01	k: 14912	n:70000
KS ci ratio: 1.065021e-01	ci left: 1.797364e-02	ci right 2.000937e-02	k: 1328	n:70000
ADAMTS17   70000 perm   18 sec   (3832 perm/sec)   p_kst 1.897143e-02   p_cons 2.130286e-01   p_joint 3.397143e-02

Joint ci ratio: 7.042150e-02	ci left: 3.597286e-02	ci right 3.861083e-02	k: 2982	n:80000
Cons ci ratio: 2.664516e-02	ci left: 2.100924e-01	ci right 2.157784e-01	k: 17034	n:80000
KS ci ratio: 9.912120e-02	ci left: 1.822371e-02	ci right 2.013639e-02	k: 1533	n:80000
ADAMTS17   80000 perm   21 sec   (3769 perm/sec)   p_kst 1.916250e-02   p_cons 2.129250e-01   p_joint 3.727500e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS17.12_3376_80000_0.019162_0.21293_0.037275.png
                gene_name: ADAMTS17
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 17 percent done.
ACSM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
ACSM2A   10000 perm   2 sec   (4924 perm/sec)   p_kst 8.516000e-01   p_cons 8.454000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSM2A.10_1786_10000_0.8516_0.8454_1.png
                gene_name: ACSM2A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ADAMTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
Cons ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
ADAMTS6   10000 perm   2 sec   (4548 perm/sec)   p_kst 2.338000e-01   p_cons 3.620000e-02   p_joint 8.930000e-02

Joint ci ratio: 7.924803e-02	ci left: 1.046639e-01	ci right 1.133501e-01	k: 2179	n:20000
Cons ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
KS ci ratio: 4.886311e-02	ci left: 2.374652e-01	ci right 2.494094e-01	k: 4868	n:20000
ADAMTS6   20000 perm   5 sec   (4161 perm/sec)   p_kst 2.434000e-01   p_cons 2.815000e-02   p_joint 1.089500e-01

Joint ci ratio: 6.603981e-02	ci left: 1.016185e-01	ci right 1.085915e-01	k: 3152	n:30000
Cons ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
KS ci ratio: 3.984801e-02	ci left: 2.390158e-01	ci right 2.487672e-01	k: 7316	n:30000
ADAMTS6   30000 perm   7 sec   (4001 perm/sec)   p_kst 2.438667e-01   p_cons 2.803333e-02   p_joint 1.050667e-01

Joint ci ratio: 7.829210e-02	ci left: 5.666142e-02	ci right 6.130286e-02	k: 2358	n:40000
Cons ci ratio: 1.012049e-01	ci left: 3.431758e-02	ci right 3.800015e-02	k: 1445	n:40000
KS ci ratio: 3.452816e-02	ci left: 2.394742e-01	ci right 2.479131e-01	k: 9747	n:40000
ADAMTS6   40000 perm   10 sec   (3905 perm/sec)   p_kst 2.436750e-01   p_cons 3.612500e-02   p_joint 5.895000e-02

Joint ci ratio: 6.956103e-02	ci left: 5.763886e-02	ci right 6.181244e-02	k: 2985	n:50000
Cons ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
KS ci ratio: 3.087625e-02	ci left: 2.400016e-01	ci right 2.475482e-01	k: 12188	n:50000
ADAMTS6   50000 perm   13 sec   (3823 perm/sec)   p_kst 2.437600e-01   p_cons 3.596000e-02   p_joint 5.970000e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS6.10_3450_50000_0.24376_0.03596_0.0597.png
                gene_name: ADAMTS6
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 19 percent done.
ACTRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
ACTRT1   10000 perm   2 sec   (5413 perm/sec)   p_kst 4.050000e-01   p_cons 5.736000e-01   p_joint 5.944000e-01

Outputting figure to mutsig2_images.part000000000003/ACTRT1.9_1135_10000_0.405_0.5736_0.5944.png
                gene_name: ACTRT1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 21 percent done.
ADAM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.803565e-02	ci left: 5.051514e-01	ci right 5.248398e-01	k: 5150	n:10000
Cons ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
KS ci ratio: 3.141317e-02	ci left: 5.992548e-01	ci right 6.184817e-01	k: 6089	n:10000
ADAM11   10000 perm   2 sec   (4913 perm/sec)   p_kst 6.089000e-01   p_cons 3.446000e-01   p_joint 5.150000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM11.9_2418_10000_0.6089_0.3446_0.515.png
                gene_name: ADAM11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 22 percent done.
ADAM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
ADAM23   10000 perm   2 sec   (4514 perm/sec)   p_kst 6.445000e-01   p_cons 7.135000e-01   p_joint 7.645000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM23.9_2603_10000_0.6445_0.7135_0.7645.png
                gene_name: ADAM23
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 23 percent done.
ADAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
Cons ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
ADAM7   10000 perm   2 sec   (4903 perm/sec)   p_kst 9.745000e-01   p_cons 1.912000e-01   p_joint 4.763000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM7.9_2353_10000_0.9745_0.1912_0.4763.png
                gene_name: ADAM7
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 24 percent done.
ADAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
Cons ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
KS ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
ADAM2   10000 perm   2 sec   (5007 perm/sec)   p_kst 5.280000e-02   p_cons 1.714000e-01   p_joint 3.830000e-02

Joint ci ratio: 1.143447e-01	ci left: 5.231807e-02	ci right 5.871192e-02	k: 1109	n:20000
Cons ci ratio: 6.099781e-02	ci left: 1.659038e-01	ci right 1.763920e-01	k: 3422	n:20000
KS ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
ADAM2   20000 perm   4 sec   (4547 perm/sec)   p_kst 5.285000e-02   p_cons 1.711000e-01   p_joint 5.545000e-02

Joint ci ratio: 6.305187e-02	ci left: 1.105231e-01	ci right 1.177518e-01	k: 3423	n:30000
Cons ci ratio: 4.654269e-02	ci left: 1.867635e-01	ci right 1.956964e-01	k: 5736	n:30000
KS ci ratio: 9.640418e-02	ci left: 4.970981e-02	ci right 5.477735e-02	k: 1566	n:30000
ADAM2   30000 perm   7 sec   (4369 perm/sec)   p_kst 5.220000e-02   p_cons 1.912000e-01   p_joint 1.141000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM2.8_2288_30000_0.0522_0.1912_0.1141.png
                gene_name: ADAM2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 26 percent done.
ADAM30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
Cons ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
ADAM30   10000 perm   2 sec   (5280 perm/sec)   p_kst 8.550000e-01   p_cons 8.921000e-01   p_joint 9.408000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM30.8_2377_10000_0.855_0.8921_0.9408.png
                gene_name: ADAM30
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 27 percent done.
ADAM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
Cons ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
KS ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
ADAM33   10000 perm   2 sec   (5386 perm/sec)   p_kst 3.769000e-01   p_cons 5.880000e-01   p_joint 5.570000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM33.8_2530_10000_0.3769_0.588_0.557.png
                gene_name: ADAM33
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 28 percent done.
ACSM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
Cons ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
KS ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
ACSM5   10000 perm   2 sec   (5708 perm/sec)   p_kst 8.029000e-01   p_cons 4.960000e-01   p_joint 8.104000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM5.7_1792_10000_0.8029_0.496_0.8104.png
                gene_name: ACSM5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 29 percent done.
ACTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
KS ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
ACTC1   10000 perm   2 sec   (5995 perm/sec)   p_kst 9.268000e-01   p_cons 2.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTC1.7_1158_10000_0.9268_0.2425_1.png
                gene_name: ACTC1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
ADAM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
KS ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
ADAM12   10000 perm   2 sec   (5091 perm/sec)   p_kst 1.632000e-01   p_cons 3.680000e-02   p_joint 8.890000e-02

Joint ci ratio: 8.895473e-02	ci left: 8.454978e-02	ci right 9.247033e-02	k: 1769	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 6.128965e-02	ci left: 1.645704e-01	ci right 1.750258e-01	k: 3395	n:20000
ADAM12   20000 perm   4 sec   (4615 perm/sec)   p_kst 1.697500e-01   p_cons 3.450000e-02   p_joint 8.845000e-02

Joint ci ratio: 7.102902e-02	ci left: 8.888357e-02	ci right 9.546233e-02	k: 2764	n:30000
Cons ci ratio: 1.187775e-01	ci left: 3.294884e-02	ci right 3.714183e-02	k: 1050	n:30000
KS ci ratio: 5.074660e-02	ci left: 1.616734e-01	ci right 1.701247e-01	k: 4976	n:30000
ADAM12   30000 perm   7 sec   (4428 perm/sec)   p_kst 1.658667e-01   p_cons 3.500000e-02   p_joint 9.213333e-02

Joint ci ratio: 7.075000e-02	ci left: 6.874776e-02	ci right 7.381469e-02	k: 2850	n:40000
Cons ci ratio: 9.943475e-02	ci left: 3.553733e-02	ci right 3.928021e-02	k: 1495	n:40000
KS ci ratio: 4.418767e-02	ci left: 1.607550e-01	ci right 1.680438e-01	k: 6575	n:40000
ADAM12   40000 perm   9 sec   (4303 perm/sec)   p_kst 1.643750e-01   p_cons 3.737500e-02   p_joint 7.125000e-02

Outputting figure to mutsig2_images.part000000000003/ADAM12.7_2930_40000_0.16437_0.037375_0.07125.png
                gene_name: ADAM12
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 32 percent done.
ADAM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
Cons ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
ADAM17   10000 perm   2 sec   (4959 perm/sec)   p_kst 6.246000e-01   p_cons 1.300000e-01   p_joint 3.500000e-01

Joint ci ratio: 4.260935e-02	ci left: 2.909703e-01	ci right 3.036887e-01	k: 5946	n:20000
Cons ci ratio: 6.983390e-02	ci left: 1.313267e-01	ci right 1.408794e-01	k: 2721	n:20000
KS ci ratio: 2.125270e-02	ci left: 6.230144e-01	ci right 6.364479e-01	k: 12595	n:20000
ADAM17   20000 perm   4 sec   (4549 perm/sec)   p_kst 6.297500e-01   p_cons 1.360500e-01   p_joint 2.973000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM17.7_2551_20000_0.62975_0.13605_0.2973.png
                gene_name: ADAM17
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 33 percent done.
ADAM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
ADAM22   10000 perm   2 sec   (4630 perm/sec)   p_kst 6.680000e-02   p_cons 2.676000e-01   p_joint 7.540000e-02

Joint ci ratio: 9.695863e-02	ci left: 7.187539e-02	ci right 7.924857e-02	k: 1510	n:20000
Cons ci ratio: 4.577458e-02	ci left: 2.621188e-01	ci right 2.744486e-01	k: 5365	n:20000
KS ci ratio: 1.028597e-01	ci left: 6.420742e-02	ci right 7.121890e-02	k: 1353	n:20000
ADAM22   20000 perm   5 sec   (4225 perm/sec)   p_kst 6.765000e-02   p_cons 2.682500e-01   p_joint 7.550000e-02

Joint ci ratio: 8.334871e-02	ci left: 6.579756e-02	ci right 7.155298e-02	k: 2059	n:30000
Cons ci ratio: 3.809895e-02	ci left: 2.558382e-01	ci right 2.658081e-01	k: 7824	n:30000
KS ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
ADAM22   30000 perm   7 sec   (4074 perm/sec)   p_kst 6.946667e-02   p_cons 2.608000e-01   p_joint 6.863333e-02

Outputting figure to mutsig2_images.part000000000003/ADAM22.7_2940_30000_0.069467_0.2608_0.068633.png
                gene_name: ADAM22
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.072 

Current progress: 35 percent done.
ADAM28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
Cons ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
KS ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
ADAM28   10000 perm   2 sec   (5421 perm/sec)   p_kst 3.522000e-01   p_cons 3.347000e-01   p_joint 3.981000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM28.7_2476_10000_0.3522_0.3347_0.3981.png
                gene_name: ADAM28
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 36 percent done.
ADAMTS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
ADAMTS15   10000 perm   2 sec   (5045 perm/sec)   p_kst 1.071000e-01   p_cons 4.451000e-01   p_joint 2.295000e-01

Joint ci ratio: 4.779929e-02	ci left: 2.455976e-01	ci right 2.576747e-01	k: 5032	n:20000
Cons ci ratio: 3.131886e-02	ci left: 4.323062e-01	ci right 4.461115e-01	k: 8784	n:20000
KS ci ratio: 7.990779e-02	ci left: 1.030921e-01	ci right 1.117224e-01	k: 2147	n:20000
ADAMTS15   20000 perm   4 sec   (4549 perm/sec)   p_kst 1.073500e-01   p_cons 4.392000e-01   p_joint 2.516000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS15.7_2885_20000_0.10735_0.4392_0.2516.png
                gene_name: ADAMTS15
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 37 percent done.
ACSM1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
ACSM1   10000 perm   2 sec   (5540 perm/sec)   p_kst 4.500000e-01   p_cons 3.755000e-01   p_joint 5.152000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM1.5_1786_10000_0.45_0.3755_0.5152.png
                gene_name: ACSM1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 38 percent done.
ACSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
Cons ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
ACSS3   10000 perm   2 sec   (5893 perm/sec)   p_kst 2.176000e-01   p_cons 2.280000e-01   p_joint 2.183000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS3.6_2125_10000_0.2176_0.228_0.2183.png
                gene_name: ACSS3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 40 percent done.
ACTRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
Cons ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
KS ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
ACTRT2   10000 perm   2 sec   (5694 perm/sec)   p_kst 4.481000e-01   p_cons 4.759000e-01   p_joint 5.251000e-01

Outputting figure to mutsig2_images.part000000000003/ACTRT2.6_1138_10000_0.4481_0.4759_0.5251.png
                gene_name: ACTRT2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 41 percent done.
ADAM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
ADAM10   10000 perm   2 sec   (5338 perm/sec)   p_kst 6.848000e-01   p_cons 1.307000e-01   p_joint 3.499000e-01

Joint ci ratio: 3.753872e-02	ci left: 3.461744e-01	ci right 3.594684e-01	k: 7056	n:20000
Cons ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
KS ci ratio: 1.890285e-02	ci left: 6.760476e-01	ci right 6.889992e-01	k: 13651	n:20000
ADAM10   20000 perm   4 sec   (4832 perm/sec)   p_kst 6.825500e-01   p_cons 1.339500e-01   p_joint 3.528000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM10.6_2311_20000_0.68255_0.13395_0.3528.png
                gene_name: ADAM10
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 42 percent done.
ADAM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
Cons ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
KS ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
ADAM20   10000 perm   2 sec   (5303 perm/sec)   p_kst 2.667000e-01   p_cons 2.032000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM20.6_2335_10000_0.2667_0.2032_0.3244.png
                gene_name: ADAM20
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 44 percent done.
ADAM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
ADAM21   10000 perm   2 sec   (5296 perm/sec)   p_kst 8.386000e-01   p_cons 7.520000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM21.6_2173_10000_0.8386_0.752_1.png
                gene_name: ADAM21
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ADAM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
ADAM9   10000 perm   2 sec   (5162 perm/sec)   p_kst 8.570000e-02   p_cons 5.800000e-02   p_joint 8.900000e-02

Joint ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
Cons ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
KS ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
ADAM9   20000 perm   4 sec   (4710 perm/sec)   p_kst 8.340000e-02   p_cons 6.200000e-02   p_joint 9.010000e-02

Joint ci ratio: 8.984505e-02	ci left: 5.697974e-02	ci right 6.237259e-02	k: 1789	n:30000
Cons ci ratio: 8.725616e-02	ci left: 6.027642e-02	ci right 6.580858e-02	k: 1890	n:30000
KS ci ratio: 7.480044e-02	ci left: 8.072102e-02	ci right 8.702651e-02	k: 2515	n:30000
ADAM9   30000 perm   7 sec   (4522 perm/sec)   p_kst 8.383333e-02   p_cons 6.300000e-02   p_joint 5.963333e-02

Outputting figure to mutsig2_images.part000000000003/ADAM9.6_2548_30000_0.083833_0.063_0.059633.png
                gene_name: ADAM9
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 46 percent done.
ADAMTS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.279280e-02	ci left: 3.459128e-01	ci right 3.647715e-01	k: 3553	n:10000
Cons ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
ADAMTS14   10000 perm   2 sec   (4840 perm/sec)   p_kst 9.739000e-01   p_cons 1.067000e-01   p_joint 3.553000e-01

Joint ci ratio: 4.368373e-02	ci left: 2.807370e-01	ci right 2.933249e-01	k: 5740	n:20000
Cons ci ratio: 8.051804e-02	ci left: 1.016679e-01	ci right 1.102470e-01	k: 2118	n:20000
KS ci ratio: 4.550479e-03	ci left: 9.714912e-01	ci right 9.759696e-01	k: 19476	n:20000
ADAMTS14   20000 perm   5 sec   (4402 perm/sec)   p_kst 9.738000e-01   p_cons 1.059000e-01   p_joint 2.870000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS14.6_3769_20000_0.9738_0.1059_0.287.png
                gene_name: ADAMTS14
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 47 percent done.
ADAMTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
ADAMTS4   10000 perm   2 sec   (4919 perm/sec)   p_kst 1.119000e-01   p_cons 6.800000e-03   p_joint 1.200000e-02

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 3.289497e-01	ci left: 5.891661e-03	ci right 8.255063e-03	k: 140	n:20000
KS ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
ADAMTS4   20000 perm   4 sec   (4469 perm/sec)   p_kst 1.121500e-01   p_cons 7.000000e-03   p_joint 1.650000e-02

Joint ci ratio: 2.159224e-01	ci left: 9.692830e-03	ci right 1.206999e-02	k: 325	n:30000
Cons ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
KS ci ratio: 6.340779e-02	ci left: 1.094055e-01	ci right 1.166029e-01	k: 3389	n:30000
ADAMTS4   30000 perm   7 sec   (4278 perm/sec)   p_kst 1.129667e-01   p_cons 8.433333e-03   p_joint 1.083333e-02

Joint ci ratio: 1.537051e-01	ci left: 1.476904e-02	ci right 1.725194e-02	k: 639	n:40000
Cons ci ratio: 2.254682e-01	ci left: 6.654309e-03	ci right 8.368353e-03	k: 299	n:40000
KS ci ratio: 5.498839e-02	ci left: 1.096167e-01	ci right 1.158396e-01	k: 4508	n:40000
ADAMTS4   40000 perm   10 sec   (4070 perm/sec)   p_kst 1.127000e-01   p_cons 7.475000e-03   p_joint 1.597500e-02

Joint ci ratio: 2.131317e-01	ci left: 6.003702e-03	ci right 7.454459e-03	k: 335	n:50000
Cons ci ratio: 1.977193e-01	ci left: 7.028568e-03	ci right 8.589391e-03	k: 389	n:50000
KS ci ratio: 5.006988e-02	ci left: 1.064592e-01	ci right 1.119463e-01	k: 5459	n:50000
ADAMTS4   50000 perm   13 sec   (3989 perm/sec)   p_kst 1.091800e-01   p_cons 7.780000e-03   p_joint 6.700000e-03

Joint ci ratio: 1.538789e-01	ci left: 9.876125e-03	ci right 1.153838e-02	k: 641	n:60000
Cons ci ratio: 1.752827e-01	ci left: 7.541761e-03	ci right 9.006400e-03	k: 495	n:60000
KS ci ratio: 4.555534e-02	ci left: 1.073420e-01	ci right 1.123625e-01	k: 6590	n:60000
ADAMTS4   60000 perm   15 sec   (3919 perm/sec)   p_kst 1.098333e-01   p_cons 8.250000e-03   p_joint 1.068333e-02

Joint ci ratio: 1.539979e-01	ci left: 8.464767e-03	ci right 9.890650e-03	k: 641	n:70000
Cons ci ratio: 1.623748e-01	ci left: 7.586368e-03	ci right 8.940583e-03	k: 577	n:70000
KS ci ratio: 4.223627e-02	ci left: 1.072524e-01	ci right 1.118943e-01	k: 7669	n:70000
ADAMTS4   70000 perm   18 sec   (3855 perm/sec)   p_kst 1.095571e-01   p_cons 8.242857e-03   p_joint 9.157143e-03

Joint ci ratio: 1.111385e-01	ci left: 1.446081e-02	ci right 1.617460e-02	k: 1224	n:80000
Cons ci ratio: 1.520703e-01	ci left: 7.610775e-03	ci right 8.875277e-03	k: 658	n:80000
KS ci ratio: 3.944962e-02	ci left: 1.076910e-01	ci right 1.120373e-01	k: 8788	n:80000
ADAMTS4   80000 perm   21 sec   (3793 perm/sec)   p_kst 1.098500e-01   p_cons 8.225000e-03   p_joint 1.530000e-02

Joint ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
Cons ci ratio: 1.429246e-01	ci left: 7.696172e-03	ci right 8.891401e-03	k: 745	n:90000
KS ci ratio: 3.705600e-02	ci left: 1.085359e-01	ci right 1.126448e-01	k: 9952	n:90000
ADAMTS4   90000 perm   24 sec   (3735 perm/sec)   p_kst 1.105778e-01   p_cons 8.277778e-03   p_joint 1.264444e-02

Joint ci ratio: 9.863149e-02	ci left: 1.478247e-02	ci right 1.632582e-02	k: 1554	n:100000
Cons ci ratio: 1.359952e-01	ci left: 7.679345e-03	ci right 8.809457e-03	k: 823	n:100000
KS ci ratio: 3.516853e-02	ci left: 1.085632e-01	ci right 1.124594e-01	k: 11050	n:100000
ADAMTS4   100000 perm   27 sec   (3681 perm/sec)   p_kst 1.105000e-01   p_cons 8.230000e-03   p_joint 1.554000e-02

Joint ci ratio: 9.622179e-02	ci left: 1.414793e-02	ci right 1.558690e-02	k: 1634	n:110000
Cons ci ratio: 1.294075e-01	ci left: 7.737110e-03	ci right 8.816330e-03	k: 909	n:110000
KS ci ratio: 3.354135e-02	ci left: 1.085989e-01	ci right 1.123126e-01	k: 12149	n:110000
ADAMTS4   110000 perm   30 sec   (3633 perm/sec)   p_kst 1.104455e-01   p_cons 8.263636e-03   p_joint 1.485455e-02

Joint ci ratio: 9.784109e-02	ci left: 1.255374e-02	ci right 1.385327e-02	k: 1583	n:120000
Cons ci ratio: 1.241968e-01	ci left: 7.721732e-03	ci right 8.752245e-03	k: 987	n:120000
KS ci ratio: 3.179414e-02	ci left: 1.106429e-01	ci right 1.142258e-01	k: 13491	n:120000
ADAMTS4   120000 perm   34 sec   (3580 perm/sec)   p_kst 1.124250e-01   p_cons 8.225000e-03   p_joint 1.319167e-02

Joint ci ratio: 9.663319e-02	ci left: 1.189559e-02	ci right 1.311092e-02	k: 1624	n:130000
Cons ci ratio: 1.200237e-01	ci left: 7.649751e-03	ci right 8.633917e-03	k: 1057	n:130000
KS ci ratio: 3.063229e-02	ci left: 1.101606e-01	ci right 1.135952e-01	k: 14543	n:130000
ADAMTS4   130000 perm   37 sec   (3531 perm/sec)   p_kst 1.118692e-01   p_cons 8.130769e-03   p_joint 1.249231e-02

Joint ci ratio: 9.443842e-02	ci left: 1.158267e-02	ci right 1.273766e-02	k: 1701	n:140000
Cons ci ratio: 1.161928e-01	ci left: 7.595489e-03	ci right 8.539342e-03	k: 1128	n:140000
KS ci ratio: 2.947224e-02	ci left: 1.105299e-01	ci right 1.138433e-01	k: 15705	n:140000
ADAMTS4   140000 perm   40 sec   (3482 perm/sec)   p_kst 1.121786e-01   p_cons 8.057143e-03   p_joint 1.215000e-02

Joint ci ratio: 8.211112e-02	ci left: 1.435173e-02	ci right 1.558712e-02	k: 2244	n:150000
Cons ci ratio: 1.128966e-01	ci left: 7.522977e-03	ci right 8.429530e-03	k: 1195	n:150000
KS ci ratio: 2.849661e-02	ci left: 1.104215e-01	ci right 1.136202e-01	k: 16802	n:150000
ADAMTS4   150000 perm   44 sec   (3435 perm/sec)   p_kst 1.120133e-01   p_cons 7.966667e-03   p_joint 1.496000e-02

Joint ci ratio: 7.421598e-02	ci left: 1.650107e-02	ci right 1.777901e-02	k: 2741	n:160000
Cons ci ratio: 1.094732e-01	ci left: 7.514580e-03	ci right 8.390891e-03	k: 1271	n:160000
KS ci ratio: 2.765972e-02	ci left: 1.099865e-01	ci right 1.130776e-01	k: 17844	n:160000
ADAMTS4   160000 perm   47 sec   (3389 perm/sec)   p_kst 1.115250e-01   p_cons 7.943750e-03   p_joint 1.713125e-02

Joint ci ratio: 9.346524e-02	ci left: 9.762266e-03	ci right 1.072513e-02	k: 1740	n:170000
Cons ci ratio: 1.169560e-01	ci left: 6.180602e-03	ci right 6.954017e-03	k: 1115	n:170000
KS ci ratio: 2.686763e-02	ci left: 1.097853e-01	ci right 1.127809e-01	k: 18917	n:170000
ADAMTS4   170000 perm   51 sec   (3345 perm/sec)   p_kst 1.112765e-01   p_cons 6.558824e-03   p_joint 1.023529e-02

Joint ci ratio: 9.104200e-02	ci left: 9.730084e-03	ci right 1.066357e-02	k: 1834	n:180000
Cons ci ratio: 1.138378e-01	ci left: 6.171736e-03	ci right 6.922067e-03	k: 1177	n:180000
KS ci ratio: 2.612740e-02	ci left: 1.097014e-01	ci right 1.126111e-01	k: 20007	n:180000
ADAMTS4   180000 perm   55 sec   (3302 perm/sec)   p_kst 1.111500e-01   p_cons 6.538889e-03   p_joint 1.018889e-02

Joint ci ratio: 9.032408e-02	ci left: 9.372210e-03	ci right 1.026389e-02	k: 1864	n:190000
Cons ci ratio: 1.114551e-01	ci left: 6.107755e-03	ci right 6.833742e-03	k: 1228	n:190000
KS ci ratio: 2.544380e-02	ci left: 1.096379e-01	ci right 1.124687e-01	k: 21099	n:190000
ADAMTS4   190000 perm   58 sec   (3259 perm/sec)   p_kst 1.110474e-01   p_cons 6.463158e-03   p_joint 9.810526e-03

Joint ci ratio: 8.810863e-02	ci left: 9.368000e-03	ci right 1.023630e-02	k: 1959	n:200000
Cons ci ratio: 1.084090e-01	ci left: 6.142750e-03	ci right 6.851668e-03	k: 1298	n:200000
KS ci ratio: 2.481874e-02	ci left: 1.095220e-01	ci right 1.122793e-01	k: 22179	n:200000
ADAMTS4   200000 perm   62 sec   (3220 perm/sec)   p_kst 1.108950e-01   p_cons 6.490000e-03   p_joint 9.795000e-03

Joint ci ratio: 8.643167e-02	ci left: 9.280550e-03	ci right 1.012354e-02	k: 2036	n:210000
Cons ci ratio: 1.056775e-01	ci left: 6.165382e-03	ci right 6.857869e-03	k: 1366	n:210000
KS ci ratio: 2.420893e-02	ci left: 1.096500e-01	ci right 1.123417e-01	k: 23308	n:210000
ADAMTS4   210000 perm   66 sec   (3182 perm/sec)   p_kst 1.109905e-01   p_cons 6.504762e-03   p_joint 9.695238e-03

Joint ci ratio: 8.470540e-02	ci left: 9.232345e-03	ci right 1.005338e-02	k: 2120	n:220000
Cons ci ratio: 1.034332e-01	ci left: 6.150730e-03	ci right 6.826008e-03	k: 1426	n:220000
KS ci ratio: 2.366320e-02	ci left: 1.095907e-01	ci right 1.122195e-01	k: 24398	n:220000
ADAMTS4   220000 perm   70 sec   (3146 perm/sec)   p_kst 1.109000e-01   p_cons 6.481818e-03   p_joint 9.636364e-03

Joint ci ratio: 7.583909e-02	ci left: 1.104692e-02	ci right 1.192197e-02	k: 2640	n:230000
Cons ci ratio: 1.004794e-01	ci left: 6.243464e-03	ci right 6.908193e-03	k: 1511	n:230000
KS ci ratio: 2.313086e-02	ci left: 1.097233e-01	ci right 1.122952e-01	k: 25531	n:230000
ADAMTS4   230000 perm   74 sec   (3111 perm/sec)   p_kst 1.110043e-01   p_cons 6.569565e-03   p_joint 1.147826e-02

Joint ci ratio: 7.421270e-02	ci left: 1.106499e-02	ci right 1.192187e-02	k: 2757	n:240000
Cons ci ratio: 9.826165e-02	ci left: 6.263678e-03	ci right 6.914991e-03	k: 1580	n:240000
KS ci ratio: 2.262859e-02	ci left: 1.098827e-01	ci right 1.124017e-01	k: 26673	n:240000
ADAMTS4   240000 perm   78 sec   (3078 perm/sec)   p_kst 1.111375e-01   p_cons 6.583333e-03   p_joint 1.148750e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS4.6_2550_240000_0.11114_0.0065833_0.011487.png
                gene_name: ADAMTS4
               theta_stop: 0.098 
                    nperm: 240000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0063 
     ci_cons_bounds_right: 0.0069 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 49 percent done.
ACTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
KS ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
ACTG2   10000 perm   2 sec   (6059 perm/sec)   p_kst 9.061000e-01   p_cons 4.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTG2.5_1163_10000_0.9061_0.4736_1.png
                gene_name: ACTG2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ACTR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
Cons ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
KS ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
ACTR3B   10000 perm   2 sec   (5638 perm/sec)   p_kst 3.783000e-01   p_cons 3.758000e-01   p_joint 6.496000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR3B.5_1305_10000_0.3783_0.3758_0.6496.png
                gene_name: ACTR3B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 51 percent done.
ACVR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
ACVR1B   10000 perm   2 sec   (5556 perm/sec)   p_kst 4.366000e-01   p_cons 7.360000e-02   p_joint 3.511000e-01

Joint ci ratio: 4.637072e-02	ci left: 2.571067e-01	ci right 2.693622e-01	k: 5264	n:20000
Cons ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
KS ci ratio: 3.159372e-02	ci left: 4.280143e-01	ci right 4.418046e-01	k: 8698	n:20000
ACVR1B   20000 perm   4 sec   (5005 perm/sec)   p_kst 4.349000e-01   p_cons 7.310000e-02   p_joint 2.632000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR1B.5_1681_20000_0.4349_0.0731_0.2632.png
                gene_name: ACVR1B
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
ADAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
Cons ci ratio: 1.451967e-02	ci left: 8.728564e-01	ci right 8.857217e-01	k: 8794	n:10000
KS ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
ADAD1   10000 perm   2 sec   (5524 perm/sec)   p_kst 1.758000e-01   p_cons 8.794000e-01   p_joint 2.701000e-01

Outputting figure to mutsig2_images.part000000000003/ADAD1.5_1775_10000_0.1758_0.8794_0.2701.png
                gene_name: ADAD1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 54 percent done.
ADAM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 1.273416e-02	ci left: 8.986739e-01	ci right 9.102893e-01	k: 9046	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
ADAM29   10000 perm   2 sec   (5319 perm/sec)   p_kst 2.020000e-01   p_cons 9.046000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM29.5_2467_10000_0.202_0.9046_0.3387.png
                gene_name: ADAM29
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 55 percent done.
ADAM32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
KS ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
ADAM32   10000 perm   2 sec   (5518 perm/sec)   p_kst 1.860000e-01   p_cons 7.422000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM32.5_2464_10000_0.186_0.7422_0.3152.png
                gene_name: ADAM32
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 56 percent done.
ADAMTS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
ADAMTS13   10000 perm   2 sec   (4959 perm/sec)   p_kst 7.959000e-01   p_cons 2.251000e-01   p_joint 5.476000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS13.5_4400_10000_0.7959_0.2251_0.5476.png
                gene_name: ADAMTS13
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 58 percent done.
ADAMTS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
Cons ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
KS ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
ADAMTS7   10000 perm   2 sec   (4611 perm/sec)   p_kst 5.739000e-01   p_cons 6.105000e-01   p_joint 7.787000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS7.5_5157_10000_0.5739_0.6105_0.7787.png
                gene_name: ADAMTS7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 59 percent done.
ACSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651132e-02	ci left: 5.255657e-01	ci right 5.452137e-01	k: 5354	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
ACSS1   10000 perm   2 sec   (5501 perm/sec)   p_kst 3.550000e-01   p_cons 4.894000e-01   p_joint 5.354000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS1.4_2126_10000_0.355_0.4894_0.5354.png
                gene_name: ACSS1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 60 percent done.
ACSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
ACSS2   10000 perm   2 sec   (5688 perm/sec)   p_kst 3.920000e-02   p_cons 1.830000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
Cons ci ratio: 2.027314e-01	ci left: 1.648770e-02	ci right 2.025418e-02	k: 366	n:20000
KS ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
ACSS2   20000 perm   4 sec   (5088 perm/sec)   p_kst 3.930000e-02   p_cons 1.830000e-02   p_joint 2.175000e-02

Joint ci ratio: 1.030266e-01	ci left: 4.365689e-02	ci right 4.843152e-02	k: 1380	n:30000
Cons ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
KS ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
ACSS2   30000 perm   6 sec   (4847 perm/sec)   p_kst 3.963333e-02   p_cons 1.930000e-02   p_joint 4.600000e-02

Joint ci ratio: 1.028394e-01	ci left: 3.324469e-02	ci right 3.687321e-02	k: 1401	n:40000
Cons ci ratio: 1.352280e-01	ci left: 1.918207e-02	ci right 2.198814e-02	k: 822	n:40000
KS ci ratio: 9.742279e-02	ci left: 3.700176e-02	ci right 4.081555e-02	k: 1555	n:40000
ACSS2   40000 perm   9 sec   (4698 perm/sec)   p_kst 3.887500e-02   p_cons 2.055000e-02   p_joint 3.502500e-02

Joint ci ratio: 1.056405e-01	ci left: 2.538247e-02	ci right 2.823283e-02	k: 1339	n:50000
Cons ci ratio: 1.197540e-01	ci left: 1.972225e-02	ci right 2.225379e-02	k: 1048	n:50000
KS ci ratio: 8.633275e-02	ci left: 3.788782e-02	ci right 4.132590e-02	k: 1979	n:50000
ACSS2   50000 perm   11 sec   (4564 perm/sec)   p_kst 3.958000e-02   p_cons 2.096000e-02   p_joint 2.678000e-02

Joint ci ratio: 8.967140e-02	ci left: 2.948084e-02	ci right 3.226478e-02	k: 1851	n:60000
Cons ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
KS ci ratio: 7.875902e-02	ci left: 3.808624e-02	ci right 4.122516e-02	k: 2378	n:60000
ACSS2   60000 perm   13 sec   (4456 perm/sec)   p_kst 3.963333e-02   p_cons 2.065000e-02   p_joint 3.085000e-02

Joint ci ratio: 8.848629e-02	ci left: 2.606337e-02	ci right 2.849031e-02	k: 1908	n:70000
Cons ci ratio: 1.019436e-01	ci left: 1.963017e-02	ci right 2.175268e-02	k: 1447	n:70000
KS ci ratio: 7.231521e-02	ci left: 3.882700e-02	ci right 4.175412e-02	k: 2819	n:70000
ACSS2   70000 perm   16 sec   (4364 perm/sec)   p_kst 4.027143e-02   p_cons 2.067143e-02   p_joint 2.725714e-02

Joint ci ratio: 8.290266e-02	ci left: 2.605923e-02	ci right 2.832523e-02	k: 2174	n:80000
Cons ci ratio: 9.515009e-02	ci left: 1.978559e-02	ci right 2.177438e-02	k: 1661	n:80000
KS ci ratio: 6.743633e-02	ci left: 3.915673e-02	ci right 4.190172e-02	k: 3241	n:80000
ACSS2   80000 perm   19 sec   (4278 perm/sec)   p_kst 4.051250e-02   p_cons 2.076250e-02   p_joint 2.717500e-02

Outputting figure to mutsig2_images.part000000000003/ACSS2.4_2221_80000_0.040512_0.020762_0.027175.png
                gene_name: ACSS2
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 62 percent done.
ACTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
ACTA1   10000 perm   2 sec   (6062 perm/sec)   p_kst 6.262000e-01   p_cons 2.606000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTA1.4_1158_10000_0.6262_0.2606_1.png
                gene_name: ACTA1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ACTL7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
Cons ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
KS ci ratio: 1.273416e-02	ci left: 8.986739e-01	ci right 9.102893e-01	k: 9046	n:10000
ACTL7B   10000 perm   2 sec   (5991 perm/sec)   p_kst 9.046000e-01   p_cons 4.378000e-01   p_joint 9.027000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL7B.4_1252_10000_0.9046_0.4378_0.9027.png
                gene_name: ACTL7B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 64 percent done.
ACTL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
Cons ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
KS ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
ACTL9   10000 perm   2 sec   (6012 perm/sec)   p_kst 3.538000e-01   p_cons 1.295000e-01   p_joint 3.860000e-01

Joint ci ratio: 4.781833e-02	ci left: 2.454488e-01	ci right 2.575236e-01	k: 5029	n:20000
Cons ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
KS ci ratio: 3.742802e-02	ci left: 3.475184e-01	ci right 3.608240e-01	k: 7083	n:20000
ACTL9   20000 perm   4 sec   (5359 perm/sec)   p_kst 3.541500e-01   p_cons 1.281000e-01   p_joint 2.514500e-01

Outputting figure to mutsig2_images.part000000000003/ACTL9.4_1255_20000_0.35415_0.1281_0.25145.png
                gene_name: ACTL9
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 65 percent done.
ACVR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.709308e-02	ci left: 3.995407e-01	ci right 4.189122e-01	k: 4092	n:10000
Cons ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KS ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
ACVR1   10000 perm   2 sec   (5637 perm/sec)   p_kst 5.206000e-01   p_cons 1.597000e-01   p_joint 4.092000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR1.4_1566_10000_0.5206_0.1597_0.4092.png
                gene_name: ACVR1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 67 percent done.
ACVR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
Cons ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
ACVR2B   10000 perm   2 sec   (5925 perm/sec)   p_kst 5.613000e-01   p_cons 4.395000e-01   p_joint 6.595000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR2B.4_1583_10000_0.5613_0.4395_0.6595.png
                gene_name: ACVR2B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 68 percent done.
ACVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
Cons ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
KS ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
ACVRL1   10000 perm   2 sec   (5819 perm/sec)   p_kst 4.674000e-01   p_cons 4.821000e-01   p_joint 6.376000e-01

Outputting figure to mutsig2_images.part000000000003/ACVRL1.4_1548_10000_0.4674_0.4821_0.6376.png
                gene_name: ACVRL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 69 percent done.
ACTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
Cons ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
KS ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
ACTN3   10000 perm   2 sec   (5753 perm/sec)   p_kst 2.569000e-01   p_cons 7.731000e-01   p_joint 3.231000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN3.3_2790_10000_0.2569_0.7731_0.3231.png
                gene_name: ACTN3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 71 percent done.
ACTR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
Cons ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
KS ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
ACTR1A   10000 perm   2 sec   (6187 perm/sec)   p_kst 8.610000e-01   p_cons 3.810000e-02   p_joint 4.385000e-01

Joint ci ratio: 2.178918e-02	ci left: 6.112746e-01	ci right 6.247910e-01	k: 12361	n:20000
Cons ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
KS ci ratio: 1.111014e-02	ci left: 8.567366e-01	ci right 8.663580e-01	k: 17232	n:20000
ACTR1A   20000 perm   4 sec   (5531 perm/sec)   p_kst 8.616000e-01   p_cons 3.875000e-02   p_joint 6.180500e-01

Joint ci ratio: 2.401438e-02	ci left: 4.647051e-01	ci right 4.760340e-01	k: 14111	n:30000
Cons ci ratio: 1.124436e-01	ci left: 3.674009e-02	ci right 4.114977e-02	k: 1167	n:30000
KS ci ratio: 9.153388e-03	ci left: 8.554488e-01	ci right 8.633482e-01	k: 25783	n:30000
ACTR1A   30000 perm   6 sec   (5275 perm/sec)   p_kst 8.594333e-01   p_cons 3.890000e-02   p_joint 4.703667e-01

Joint ci ratio: 2.136601e-02	ci left: 4.520591e-01	ci right 4.618472e-01	k: 18278	n:40000
Cons ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
KS ci ratio: 7.910834e-03	ci left: 8.564852e-01	ci right 8.633125e-01	k: 34397	n:40000
ACTR1A   40000 perm   8 sec   (5110 perm/sec)   p_kst 8.599250e-01   p_cons 3.892500e-02   p_joint 4.569500e-01

Outputting figure to mutsig2_images.part000000000003/ACTR1A.3_1175_40000_0.85993_0.038925_0.45695.png
                gene_name: ACTR1A
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 72 percent done.
ACTR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
Cons ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
KS ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
ACTR1B   10000 perm   2 sec   (6457 perm/sec)   p_kst 7.272000e-01   p_cons 3.176000e-01   p_joint 6.696000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR1B.3_1175_10000_0.7272_0.3176_0.6696.png
                gene_name: ACTR1B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 73 percent done.
ACTR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
Cons ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
KS ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
ACTR8   10000 perm   2 sec   (5972 perm/sec)   p_kst 8.819000e-01   p_cons 6.420000e-02   p_joint 5.155000e-01

Joint ci ratio: 2.851793e-02	ci left: 4.788008e-01	ci right 4.927034e-01	k: 9715	n:20000
Cons ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
KS ci ratio: 1.009094e-02	ci left: 8.784647e-01	ci right 8.874237e-01	k: 17660	n:20000
ACTR8   20000 perm   4 sec   (5292 perm/sec)   p_kst 8.830000e-01   p_cons 6.300000e-02   p_joint 4.857500e-01

Joint ci ratio: 2.043483e-02	ci left: 5.452167e-01	ci right 5.565068e-01	k: 16526	n:30000
Cons ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
KS ci ratio: 8.184336e-03	ci left: 8.806941e-01	ci right 8.879646e-01	k: 26531	n:30000
ACTR8   30000 perm   6 sec   (5026 perm/sec)   p_kst 8.843667e-01   p_cons 6.133333e-02   p_joint 5.508667e-01

Outputting figure to mutsig2_images.part000000000003/ACTR8.3_1927_30000_0.88437_0.061333_0.55087.png
                gene_name: ACTR8
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 74 percent done.
ACVR1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130334e-02	ci left: 9.179100e-01	ci right 9.284419e-01	k: 9233	n:10000
Cons ci ratio: 6.682605e-02	ci left: 2.473694e-01	ci right 2.645729e-01	k: 2559	n:10000
KS ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
ACVR1C   10000 perm   2 sec   (6109 perm/sec)   p_kst 4.945000e-01   p_cons 2.559000e-01   p_joint 9.233000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR1C.3_1518_10000_0.4945_0.2559_0.9233.png
                gene_name: ACVR1C
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 76 percent done.
ACVR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
KS ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
ACVR2A   10000 perm   2 sec   (6135 perm/sec)   p_kst 4.539000e-01   p_cons 6.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACVR2A.3_1586_10000_0.4539_0.6383_1.png
                gene_name: ACVR2A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ADAM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.103232e-03	ci left: 9.550321e-01	ci right 9.628976e-01	k: 9591	n:10000
Cons ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
ADAM15   10000 perm   2 sec   (5634 perm/sec)   p_kst 4.689000e-01   p_cons 6.780000e-01   p_joint 9.591000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM15.3_2684_10000_0.4689_0.678_0.9591.png
                gene_name: ADAM15
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 78 percent done.
ADAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
ADAM18   10000 perm   2 sec   (6280 perm/sec)   p_kst 8.289000e-01   p_cons 6.091000e-01   p_joint 9.752000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM18.3_2300_10000_0.8289_0.6091_0.9752.png
                gene_name: ADAM18
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 79 percent done.
ADAM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
KS ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
ADAM8   10000 perm   2 sec   (5734 perm/sec)   p_kst 8.237000e-01   p_cons 9.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM8.3_2485_10000_0.8237_0.901_1.png
                gene_name: ADAM8
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ADAMDEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
KS ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
ADAMDEC1   10000 perm   2 sec   (6369 perm/sec)   p_kst 6.590000e-02   p_cons 7.648000e-01   p_joint 2.186000e-01

Joint ci ratio: 5.809124e-02	ci left: 1.800351e-01	ci right 1.908565e-01	k: 3708	n:20000
Cons ci ratio: 1.575144e-02	ci left: 7.498849e-01	ci right 7.618407e-01	k: 15118	n:20000
KS ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
ADAMDEC1   20000 perm   4 sec   (5685 perm/sec)   p_kst 6.540000e-02   p_cons 7.559000e-01   p_joint 1.854000e-01

Joint ci ratio: 5.374126e-02	ci left: 1.465701e-01	ci right 1.546977e-01	k: 4518	n:30000
Cons ci ratio: 1.271580e-02	ci left: 7.551926e-01	ci right 7.648903e-01	k: 22802	n:30000
KS ci ratio: 8.578873e-02	ci left: 6.226857e-02	ci right 6.788268e-02	k: 1951	n:30000
ADAMDEC1   30000 perm   6 sec   (5398 perm/sec)   p_kst 6.503333e-02   p_cons 7.600667e-01   p_joint 1.506000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMDEC1.3_1469_30000_0.065033_0.76007_0.1506.png
                gene_name: ADAMDEC1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 82 percent done.
ACSM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
Cons ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
KS ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
ACSM3   10000 perm   2 sec   (6563 perm/sec)   p_kst 2.788000e-01   p_cons 5.860000e-02   p_joint 3.457000e-01

Joint ci ratio: 2.661860e-02	ci left: 5.132486e-01	ci right 5.271455e-01	k: 10404	n:20000
Cons ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
KS ci ratio: 4.398987e-02	ci left: 2.779062e-01	ci right 2.904566e-01	k: 5683	n:20000
ACSM3   20000 perm   3 sec   (5827 perm/sec)   p_kst 2.841500e-01   p_cons 5.975000e-02   p_joint 5.202000e-01

Joint ci ratio: 5.861662e-02	ci left: 1.259175e-01	ci right 1.335544e-01	k: 3891	n:30000
Cons ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
KS ci ratio: 3.619624e-02	ci left: 2.759515e-01	ci right 2.861576e-01	k: 8431	n:30000
ACSM3   30000 perm   5 sec   (5550 perm/sec)   p_kst 2.810333e-01   p_cons 5.846667e-02   p_joint 1.297000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM3.2_1906_30000_0.28103_0.058467_0.1297.png
                gene_name: ACSM3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 83 percent done.
ACTBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
Cons ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
KS ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
ACTBL2   10000 perm   1 sec   (6958 perm/sec)   p_kst 2.615000e-01   p_cons 6.126000e-01   p_joint 3.276000e-01

Outputting figure to mutsig2_images.part000000000003/ACTBL2.2_1135_10000_0.2615_0.6126_0.3276.png
                gene_name: ACTBL2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 85 percent done.
ACTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
ACTG1   10000 perm   1 sec   (6703 perm/sec)   p_kst 7.060000e-02   p_cons 2.059000e-01   p_joint 6.550000e-01

Joint ci ratio: 2.062815e-02	ci left: 6.368667e-01	ci right 6.501915e-01	k: 12871	n:20000
Cons ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
KS ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
ACTG1   20000 perm   3 sec   (5947 perm/sec)   p_kst 6.980000e-02   p_cons 2.037500e-01   p_joint 6.435500e-01

Joint ci ratio: 6.351345e-02	ci left: 1.090769e-01	ci right 1.162650e-01	k: 3379	n:30000
Cons ci ratio: 4.495968e-02	ci left: 1.976013e-01	ci right 2.067231e-01	k: 6064	n:30000
KS ci ratio: 8.251311e-02	ci left: 6.707248e-02	ci right 7.287780e-02	k: 2098	n:30000
ACTG1   30000 perm   5 sec   (5654 perm/sec)   p_kst 6.993333e-02   p_cons 2.021333e-01   p_joint 1.126333e-01

Outputting figure to mutsig2_images.part000000000003/ACTG1.2_1148_30000_0.069933_0.20213_0.11263.png
                gene_name: ACTG1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 86 percent done.
ACTL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
KS ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
ACTL6A   10000 perm   1 sec   (6872 perm/sec)   p_kst 2.543000e-01   p_cons 8.657000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTL6A.2_1346_10000_0.2543_0.8657_1.png
                gene_name: ACTL6A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
ACTL6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
ACTL6B   10000 perm   2 sec   (6621 perm/sec)   p_kst 2.296000e-01   p_cons 3.970000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL6B.2_1337_10000_0.2296_0.397_0.4281.png
                gene_name: ACTL6B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 88 percent done.
ACTL7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
Cons ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
KS ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
ACTL7A   10000 perm   1 sec   (6947 perm/sec)   p_kst 2.888000e-01   p_cons 3.559000e-01   p_joint 7.367000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL7A.2_1312_10000_0.2888_0.3559_0.7367.png
                gene_name: ACTL7A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 90 percent done.
ACTL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
Cons ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
KS ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
ACTL8   10000 perm   1 sec   (6800 perm/sec)   p_kst 6.723000e-01   p_cons 1.967000e-01   p_joint 4.013000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL8.2_1109_10000_0.6723_0.1967_0.4013.png
                gene_name: ACTL8
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 91 percent done.
ACTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
ACTN1   10000 perm   2 sec   (5874 perm/sec)   p_kst 1.080000e-02   p_cons 6.755000e-01   p_joint 2.281000e-01

Joint ci ratio: 8.987697e-02	ci left: 8.293337e-02	ci right 9.078723e-02	k: 1736	n:20000
Cons ci ratio: 1.935358e-02	ci left: 6.656950e-01	ci right 6.787549e-01	k: 13445	n:20000
KS ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
ACTN1   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.030000e-02   p_cons 6.722500e-01   p_joint 8.680000e-02

Joint ci ratio: 1.163885e-01	ci left: 3.430906e-02	ci right 3.858132e-02	k: 1092	n:30000
Cons ci ratio: 1.582325e-02	ci left: 6.663196e-01	ci right 6.769805e-01	k: 20150	n:30000
KS ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
ACTN1   30000 perm   6 sec   (5029 perm/sec)   p_kst 1.126667e-02   p_cons 6.716667e-01   p_joint 3.640000e-02

Joint ci ratio: 5.218480e-02	ci left: 1.203895e-01	ci right 1.268652e-01	k: 4944	n:40000
Cons ci ratio: 1.372879e-02	ci left: 6.662202e-01	ci right 6.754549e-01	k: 26834	n:40000
KS ci ratio: 1.805274e-01	ci left: 1.059762e-02	ci right 1.272416e-02	k: 465	n:40000
ACTN1   40000 perm   8 sec   (4881 perm/sec)   p_kst 1.162500e-02   p_cons 6.708500e-01   p_joint 1.236000e-01

Joint ci ratio: 3.321836e-02	ci left: 2.142085e-01	ci right 2.214643e-01	k: 10891	n:50000
Cons ci ratio: 1.231923e-02	ci left: 6.652769e-01	ci right 6.735434e-01	k: 33471	n:50000
KS ci ratio: 1.626742e-01	ci left: 1.054551e-02	ci right 1.243185e-02	k: 573	n:50000
ACTN1   50000 perm   10 sec   (4763 perm/sec)   p_kst 1.146000e-02   p_cons 6.694200e-01   p_joint 2.178200e-01

Joint ci ratio: 4.491107e-02	ci left: 1.101306e-01	ci right 1.152069e-01	k: 6759	n:60000
Cons ci ratio: 1.128242e-02	ci left: 6.641987e-01	ci right 6.717517e-01	k: 40079	n:60000
KS ci ratio: 1.490269e-01	ci left: 1.054987e-02	ci right 1.226455e-02	k: 683	n:60000
ACTN1   60000 perm   13 sec   (4659 perm/sec)   p_kst 1.138333e-02   p_cons 6.679833e-01   p_joint 1.126500e-01

Joint ci ratio: 4.177286e-02	ci left: 1.094038e-01	ci right 1.140856e-01	k: 7821	n:70000
Cons ci ratio: 1.047574e-02	ci left: 6.631939e-01	ci right 6.701922e-01	k: 46669	n:70000
KS ci ratio: 1.393027e-01	ci left: 1.040600e-02	ci right 1.197777e-02	k: 782	n:70000
ACTN1   70000 perm   15 sec   (4563 perm/sec)   p_kst 1.117143e-02   p_cons 6.667000e-01   p_joint 1.117286e-01

Joint ci ratio: 3.914012e-02	ci left: 1.092277e-01	ci right 1.136006e-01	k: 8912	n:80000
Cons ci ratio: 9.791182e-03	ci left: 6.637846e-01	ci right 6.703283e-01	k: 53365	n:80000
KS ci ratio: 1.301484e-01	ci left: 1.048228e-02	ci right 1.195348e-02	k: 896	n:80000
ACTN1   80000 perm   18 sec   (4473 perm/sec)   p_kst 1.120000e-02   p_cons 6.670625e-01   p_joint 1.114000e-01

Joint ci ratio: 3.686678e-02	ci left: 1.095388e-01	ci right 1.136640e-01	k: 10043	n:90000
Cons ci ratio: 9.505479e-03	ci left: 6.508149e-01	ci right 6.570418e-01	k: 58854	n:90000
KS ci ratio: 1.238348e-01	ci left: 1.032881e-02	ci right 1.170298e-02	k: 990	n:90000
ACTN1   90000 perm   21 sec   (4388 perm/sec)   p_kst 1.100000e-02   p_cons 6.539333e-01   p_joint 1.115889e-01

Joint ci ratio: 3.211918e-02	ci left: 1.275539e-01	ci right 1.317276e-01	k: 12963	n:100000
Cons ci ratio: 9.016967e-03	ci left: 6.510122e-01	ci right 6.569189e-01	k: 65397	n:100000
KS ci ratio: 1.165794e-01	ci left: 1.052783e-02	ci right 1.184076e-02	k: 1117	n:100000
ACTN1   100000 perm   23 sec   (4313 perm/sec)   p_kst 1.117000e-02   p_cons 6.539700e-01   p_joint 1.296300e-01

Joint ci ratio: 3.083397e-02	ci left: 1.261303e-01	ci right 1.300893e-01	k: 14091	n:110000
Cons ci ratio: 8.597640e-03	ci left: 6.511348e-01	ci right 6.567662e-01	k: 71935	n:110000
KS ci ratio: 1.110537e-01	ci left: 1.057763e-02	ci right 1.183015e-02	k: 1231	n:110000
ACTN1   110000 perm   26 sec   (4239 perm/sec)   p_kst 1.119091e-02   p_cons 6.539545e-01   p_joint 1.281000e-01

Joint ci ratio: 3.150287e-02	ci left: 1.124801e-01	ci right 1.160885e-01	k: 13713	n:120000
Cons ci ratio: 8.250352e-03	ci left: 6.502238e-01	ci right 6.556188e-01	k: 78351	n:120000
KS ci ratio: 1.064862e-01	ci left: 1.057168e-02	ci right 1.176878e-02	k: 1339	n:120000
ACTN1   120000 perm   29 sec   (4168 perm/sec)   p_kst 1.115833e-02   p_cons 6.529250e-01   p_joint 1.142750e-01

Joint ci ratio: 3.027369e-02	ci left: 1.125064e-01	ci right 1.159724e-01	k: 14850	n:130000
Cons ci ratio: 7.929276e-03	ci left: 6.501817e-01	ci right 6.553653e-01	k: 84861	n:130000
KS ci ratio: 1.023325e-01	ci left: 1.059003e-02	ci right 1.173962e-02	k: 1450	n:130000
ACTN1   130000 perm   32 sec   (4103 perm/sec)   p_kst 1.115385e-02   p_cons 6.527769e-01   p_joint 1.142308e-01

Joint ci ratio: 2.918110e-02	ci left: 1.125100e-01	ci right 1.158489e-01	k: 15984	n:140000
Cons ci ratio: 7.636363e-03	ci left: 6.505427e-01	ci right 6.555366e-01	k: 91426	n:140000
KS ci ratio: 9.834357e-02	ci left: 1.066926e-02	ci right 1.177969e-02	k: 1570	n:140000
ACTN1   140000 perm   35 sec   (4038 perm/sec)   p_kst 1.121429e-02   p_cons 6.530429e-01   p_joint 1.141714e-01

Outputting figure to mutsig2_images.part000000000003/ACTN1.2_2833_140000_0.011214_0.65304_0.11417.png
                gene_name: ACTN1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 92 percent done.
ACTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
KS ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
ACTN4   10000 perm   2 sec   (5952 perm/sec)   p_kst 9.810000e-01   p_cons 9.099000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTN4.2_2820_10000_0.981_0.9099_1.png
                gene_name: ACTN4
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
ACTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
Cons ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
KS ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
ACTR2   10000 perm   2 sec   (6653 perm/sec)   p_kst 1.875000e-01   p_cons 5.999000e-01   p_joint 9.372000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR2.2_1240_10000_0.1875_0.5999_0.9372.png
                gene_name: ACTR2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
ACTR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
Cons ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
KS ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
ACTR3C   10000 perm   1 sec   (7048 perm/sec)   p_kst 3.033000e-01   p_cons 5.809000e-01   p_joint 6.068000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR3C.2_657_10000_0.3033_0.5809_0.6068.png
                gene_name: ACTR3C
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 96 percent done.
ACY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.724836e-02	ci left: 3.099678e-01	ci right 3.283376e-01	k: 3191	n:10000
Cons ci ratio: 8.090944e-02	ci left: 1.823522e-01	ci right 1.978288e-01	k: 1900	n:10000
KS ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
ACY3   10000 perm   1 sec   (6833 perm/sec)   p_kst 5.490000e-01   p_cons 1.900000e-01   p_joint 3.191000e-01

Outputting figure to mutsig2_images.part000000000003/ACY3.2_984_10000_0.549_0.19_0.3191.png
                gene_name: ACY3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 97 percent done.
ADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
KS ci ratio: 1.860317e-02	ci left: 8.084670e-01	ci right 8.237484e-01	k: 8162	n:10000
ADA   10000 perm   1 sec   (6729 perm/sec)   p_kst 8.162000e-01   p_cons 1.513000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000003/ADA.2_1140_10000_0.8162_0.1513_0.4145.png
                gene_name: ADA
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 99 percent done.
ADAMTS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
KS ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
ADAMTS10   10000 perm   2 sec   (5584 perm/sec)   p_kst 5.348000e-01   p_cons 3.483000e-01   p_joint 5.464000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS10.2_3408_10000_0.5348_0.3483_0.5464.png
                gene_name: ADAMTS10
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000003
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 3 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1531>
Subject: Job 4421669: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1531>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000004> was used as the working directory.
Started at Wed Oct 24 17:29:27 2012
Results reported at Wed Oct 24 17:44:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000004.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000004.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 4  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000004.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1018.49 sec.
    Max Memory :      5294 MB
    Max Swap   :      7906 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
4
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 4
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 4: processing genes 272 - 362
Calculating significance of each gene.
Using projection method.
272	ADAMTS8	1
273	ADAMTS9	9.999819e-01
274	ADAMTSL1	9.996735e-01
275	ADAMTSL2	1
In gene ADAMTSL3 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 5192    n = 1	mu =   9.71e-07
276	ADAMTSL3	9.757054e-01
277	ADAMTSL4	5.678242e-01
278	ADAMTSL5	1
279	ADAP1	9.013312e-01
280	ADAP2	8.195831e-01
281	ADAR	9.957435e-01
282	ADARB1	1.233830e-01
283	ADARB2	7.912181e-01
284	ADAT1	8.386183e-01
285	ADAT2	6.591722e-01
286	ADAT3	5.563233e-01
287	ADC	6.383277e-01
288	ADCK1	9.550568e-01
289	ADCK2	8.776207e-01
290	ADCK4	4.913925e-01
291	ADCK5	1
292	ADCY1	9.983938e-01
293	ADCY10	1.473817e-01
294	ADCY2	1
295	ADCY3	7.782565e-01
296	ADCY4	9.166882e-01
297	ADCY5	9.719032e-01
298	ADCY6	5.243031e-01
299	ADCY7	6.235128e-01
300	ADCY8	1
301	ADCY9	9.996518e-01
302	ADCYAP1	5.511672e-01
303	ADCYAP1R1	7.602997e-01
304	ADD1	8.167633e-01
305	ADD2	1
306	ADD3	7.250006e-01
307	ADH1A	4.444298e-01
308	ADH1B	7.862713e-03
309	ADH1C	6.925748e-02
310	ADH4	6.808862e-03
311	ADH5	3.412877e-01
312	ADH6	7.653818e-02
313	ADH7	9.022470e-01
314	ADHFE1	1
315	ADI1	1
316	ADIG	1
317	ADIPOQ	7.812728e-02
318	ADIPOR1	7.515422e-01
319	ADIPOR2	8.657720e-01
320	ADK	1
321	ADM	1
322	ADM2	1
In gene ADNP the following bins exceed PROBCAP:
    LUAD-17-Z039-TP	categ 6	N = 3321    n = 1	mu =   3.35e-08
323	ADNP	8.637114e-01
324	ADNP2	6.370830e-01
325	ADO	1
326	ADORA1	1
327	ADORA2A	1
328	ADORA2B	6.252137e-01
329	ADORA3	9.072425e-01
330	ADPGK	1
331	ADPRH	6.895286e-02
332	ADPRHL1	7.609906e-01
333	ADPRHL2	4.974842e-01
334	ADRA1A	1
335	ADRA1B	1.369722e-01
336	ADRA1D	8.316765e-01
337	ADRA2A	1
338	ADRA2B	8.634768e-01
339	ADRA2C	3.048844e-01
340	ADRB1	1
341	ADRB2	5.092207e-01
342	ADRB3	5.780949e-02
343	ADRBK1	9.592777e-01
344	ADRBK2	3.841571e-01
345	ADRM1	1
346	ADSL	1
347	ADSS	1
348	ADSSL1	8.720520e-01
349	AEBP1	9.789800e-01
350	AEBP2	7.135879e-01
351	AEN	5.836215e-01
352	AES	1.722899e-01
353	AFAP1	1
354	AFAP1L1	8.712212e-01
355	AFAP1L2	2.407016e-01
356	AFF1	9.983043e-01
357	AFF2	9.540845e-01
358	AFF3	7.433768e-01
359	AFF4	9.283488e-01
360	AFG3L2	8.954862e-01
361	AFM	7.768366e-01
362	AFMID	1
Done

Running MutSig 2:
Scatter job 4: processing genes 272 - 362
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADCY8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
ADCY8   10000 perm   3 sec   (3611 perm/sec)   p_kst 2.162000e-01   p_cons 2.091000e-01   p_joint 3.061000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY8.22_3828_10000_0.2162_0.2091_0.3061.png
                gene_name: ADCY8
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 2 percent done.
ADAMTSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
ADAMTSL3   10000 perm   3 sec   (3247 perm/sec)   p_kst 8.763000e-01   p_cons 8.800000e-03   p_joint 1.253000e-01

Joint ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
Cons ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
KS ci ratio: 1.033592e-02	ci left: 8.733333e-01	ci right 8.824565e-01	k: 17559	n:20000
ADAMTSL3   20000 perm   7 sec   (3024 perm/sec)   p_kst 8.779500e-01   p_cons 8.500000e-03   p_joint 5.960000e-02

Joint ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
Cons ci ratio: 2.366011e-01	ci left: 7.993789e-03	ci right 1.016955e-02	k: 271	n:30000
KS ci ratio: 8.426486e-03	ci left: 8.745133e-01	ci right 8.819466e-01	k: 26348	n:30000
ADAMTSL3   30000 perm   10 sec   (2941 perm/sec)   p_kst 8.782667e-01   p_cons 9.033333e-03   p_joint 4.333333e-02

Joint ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
Cons ci ratio: 2.071242e-01	ci left: 7.955470e-03	ci right 9.816879e-03	k: 354	n:40000
KS ci ratio: 7.221874e-03	ci left: 8.772557e-01	ci right 8.836389e-01	k: 35219	n:40000
ADAMTSL3   40000 perm   14 sec   (2876 perm/sec)   p_kst 8.804750e-01   p_cons 8.850000e-03   p_joint 4.080000e-02

Joint ci ratio: 8.331175e-02	ci left: 4.063082e-02	ci right 4.418256e-02	k: 2119	n:50000
Cons ci ratio: 1.864808e-01	ci left: 7.942767e-03	ci right 9.595025e-03	k: 437	n:50000
KS ci ratio: 6.470873e-03	ci left: 8.772206e-01	ci right 8.829352e-01	k: 44005	n:50000
ADAMTSL3   50000 perm   18 sec   (2819 perm/sec)   p_kst 8.801000e-01   p_cons 8.740000e-03   p_joint 4.238000e-02

Joint ci ratio: 7.594394e-02	ci left: 4.089971e-02	ci right 4.414473e-02	k: 2550	n:60000
Cons ci ratio: 1.698424e-01	ci left: 8.052238e-03	ci right 9.562516e-03	k: 527	n:60000
KS ci ratio: 6.013351e-03	ci left: 8.736222e-01	ci right 8.789080e-01	k: 52577	n:60000
ADAMTSL3   60000 perm   22 sec   (2769 perm/sec)   p_kst 8.762833e-01   p_cons 8.783333e-03   p_joint 4.250000e-02

Joint ci ratio: 6.972731e-02	ci left: 4.169168e-02	ci right 4.471776e-02	k: 3023	n:70000
Cons ci ratio: 1.554711e-01	ci left: 8.299922e-03	ci right 9.712657e-03	k: 629	n:70000
KS ci ratio: 5.556185e-03	ci left: 8.742560e-01	ci right 8.791413e-01	k: 61370	n:70000
ADAMTSL3   70000 perm   26 sec   (2729 perm/sec)   p_kst 8.767143e-01   p_cons 8.985714e-03   p_joint 4.318571e-02

Joint ci ratio: 6.761040e-02	ci left: 3.895997e-02	ci right 4.169850e-02	k: 3225	n:80000
Cons ci ratio: 1.453282e-01	ci left: 8.357177e-03	ci right 9.678798e-03	k: 720	n:80000
KS ci ratio: 5.200364e-03	ci left: 8.742884e-01	ci right 8.788593e-01	k: 70127	n:80000
ADAMTSL3   80000 perm   30 sec   (2692 perm/sec)   p_kst 8.765875e-01   p_cons 9.000000e-03   p_joint 4.031250e-02

Joint ci ratio: 5.747549e-02	ci left: 4.773020e-02	ci right 5.056562e-02	k: 4422	n:90000
Cons ci ratio: 1.370275e-01	ci left: 8.393311e-03	ci right 9.638645e-03	k: 810	n:90000
KS ci ratio: 4.920764e-03	ci left: 8.736276e-01	ci right 8.779481e-01	k: 78822	n:90000
ADAMTSL3   90000 perm   34 sec   (2658 perm/sec)   p_kst 8.758000e-01   p_cons 9.000000e-03   p_joint 4.913333e-02

Joint ci ratio: 4.980214e-02	ci left: 5.688523e-02	ci right 5.980045e-02	k: 5833	n:100000
Cons ci ratio: 1.293535e-01	ci left: 8.511043e-03	ci right 9.697693e-03	k: 909	n:100000
KS ci ratio: 4.685815e-03	ci left: 8.729142e-01	ci right 8.770240e-01	k: 87498	n:100000
ADAMTSL3   100000 perm   38 sec   (2626 perm/sec)   p_kst 8.749800e-01   p_cons 9.090000e-03   p_joint 5.833000e-02

Joint ci ratio: 5.189722e-02	ci left: 4.802798e-02	ci right 5.059585e-02	k: 5423	n:110000
Cons ci ratio: 1.221086e-01	ci left: 8.714737e-03	ci right 9.856815e-03	k: 1020	n:110000
KS ci ratio: 4.473457e-03	ci left: 8.727292e-01	ci right 8.766510e-01	k: 96217	n:110000
ADAMTSL3   110000 perm   42 sec   (2594 perm/sec)   p_kst 8.747000e-01   p_cons 9.272727e-03   p_joint 4.930000e-02

Joint ci ratio: 4.917890e-02	ci left: 4.904539e-02	ci right 5.152640e-02	k: 6033	n:120000
Cons ci ratio: 1.175412e-01	ci left: 8.643261e-03	ci right 9.730657e-03	k: 1101	n:120000
KS ci ratio: 4.418081e-03	ci left: 8.658035e-01	ci right 8.696454e-01	k: 104128	n:120000
ADAMTSL3   120000 perm   47 sec   (2566 perm/sec)   p_kst 8.677333e-01   p_cons 9.175000e-03   p_joint 5.027500e-02

Joint ci ratio: 4.653740e-02	ci left: 5.054817e-02	ci right 5.296418e-02	k: 6727	n:130000
Cons ci ratio: 1.088974e-01	ci left: 9.331496e-03	ci right 1.041361e-02	k: 1282	n:130000
KS ci ratio: 4.248353e-03	ci left: 8.656837e-01	ci right 8.693768e-01	k: 112780	n:130000
ADAMTSL3   130000 perm   51 sec   (2538 perm/sec)   p_kst 8.675385e-01   p_cons 9.861538e-03   p_joint 5.174615e-02

Joint ci ratio: 4.545836e-02	ci left: 4.928805e-02	ci right 5.158776e-02	k: 7060	n:140000
Cons ci ratio: 1.048478e-01	ci left: 9.367116e-03	ci right 1.041048e-02	k: 1383	n:140000
KS ci ratio: 4.105938e-03	ci left: 8.650664e-01	ci right 8.686327e-01	k: 121360	n:140000
ADAMTSL3   140000 perm   56 sec   (2511 perm/sec)   p_kst 8.668571e-01   p_cons 9.878571e-03   p_joint 5.042857e-02

Joint ci ratio: 4.418938e-02	ci left: 4.874412e-02	ci right 5.095333e-02	k: 7476	n:150000
Cons ci ratio: 1.012187e-01	ci left: 9.398633e-03	ci right 1.040711e-02	k: 1484	n:150000
KS ci ratio: 3.964255e-03	ci left: 8.652711e-01	ci right 8.687147e-01	k: 130050	n:150000
ADAMTSL3   150000 perm   60 sec   (2485 perm/sec)   p_kst 8.670000e-01   p_cons 9.893333e-03   p_joint 4.984000e-02

Joint ci ratio: 4.321117e-02	ci left: 4.786072e-02	ci right 4.998067e-02	k: 7826	n:160000
Cons ci ratio: 9.741626e-02	ci left: 9.530433e-03	ci right 1.051244e-02	k: 1602	n:160000
KS ci ratio: 3.837851e-03	ci left: 8.653578e-01	ci right 8.686914e-01	k: 138725	n:160000
ADAMTSL3   160000 perm   65 sec   (2457 perm/sec)   p_kst 8.670313e-01   p_cons 1.001250e-02   p_joint 4.891250e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTSL3.19_5192_160000_0.86703_0.010013_0.048912.png
                gene_name: ADAMTSL3
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 3 percent done.
ADAMTS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788918e-02	ci left: 6.545449e-01	ci right 6.731595e-01	k: 6639	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
ADAMTS9   10000 perm   3 sec   (3268 perm/sec)   p_kst 5.372000e-01   p_cons 4.188000e-01   p_joint 6.639000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTS9.18_5964_10000_0.5372_0.4188_0.6639.png
                gene_name: ADAMTS9
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 5 percent done.
ADCY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
Cons ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
ADCY2   10000 perm   3 sec   (3781 perm/sec)   p_kst 4.100000e-02   p_cons 2.445000e-01   p_joint 1.117000e-01

Joint ci ratio: 8.404411e-02	ci left: 9.396221e-02	ci right 1.022551e-01	k: 1961	n:20000
Cons ci ratio: 4.854030e-02	ci left: 2.398947e-01	ci right 2.518792e-01	k: 4917	n:20000
KS ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
ADCY2   20000 perm   6 sec   (3497 perm/sec)   p_kst 4.080000e-02   p_cons 2.458500e-01   p_joint 9.805000e-02

Joint ci ratio: 8.509146e-02	ci left: 6.324861e-02	ci right 6.890245e-02	k: 1981	n:30000
Cons ci ratio: 3.939588e-02	ci left: 2.432205e-01	ci right 2.530283e-01	k: 7443	n:30000
KS ci ratio: 1.083574e-01	ci left: 3.953067e-02	ci right 4.409193e-02	k: 1253	n:30000
ADCY2   30000 perm   9 sec   (3390 perm/sec)   p_kst 4.176667e-02   p_cons 2.481000e-01   p_joint 6.603333e-02

Joint ci ratio: 7.904257e-02	ci left: 5.563087e-02	ci right 6.023357e-02	k: 2316	n:40000
Cons ci ratio: 3.422413e-02	ci left: 2.427299e-01	ci right 2.512068e-01	k: 9878	n:40000
KS ci ratio: 9.300209e-02	ci left: 4.054389e-02	ci right 4.452287e-02	k: 1700	n:40000
ADCY2   40000 perm   12 sec   (3287 perm/sec)   p_kst 4.250000e-02   p_cons 2.469500e-01   p_joint 5.790000e-02

Outputting figure to mutsig2_images.part000000000004/ADCY2.18_3376_40000_0.0425_0.24695_0.0579.png
                gene_name: ADCY2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 6 percent done.
AFF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
KS ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
AFF2   10000 perm   3 sec   (3590 perm/sec)   p_kst 8.079000e-01   p_cons 6.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AFF2.17_4075_10000_0.8079_0.631_1.png
                gene_name: AFF2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
ADAMTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
Cons ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
KS ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
ADAMTSL1   10000 perm   3 sec   (3387 perm/sec)   p_kst 3.306000e-01   p_cons 9.250000e-02   p_joint 1.941000e-01

Joint ci ratio: 5.436813e-02	ci left: 2.006605e-01	ci right 2.119250e-01	k: 4125	n:20000
Cons ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
KS ci ratio: 3.991031e-02	ci left: 3.188577e-01	ci right 3.318931e-01	k: 6507	n:20000
ADAMTSL1   20000 perm   6 sec   (3210 perm/sec)   p_kst 3.253500e-01   p_cons 9.045000e-02   p_joint 2.062500e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTSL1.14_5409_20000_0.32535_0.09045_0.20625.png
                gene_name: ADAMTSL1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 10 percent done.
ADCY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
ADCY10   10000 perm   3 sec   (3643 perm/sec)   p_kst 3.352000e-01   p_cons 5.200000e-01   p_joint 4.606000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY10.13_4961_10000_0.3352_0.52_0.4606.png
                gene_name: ADCY10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 11 percent done.
ADCY5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
Cons ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
KS ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
ADCY5   10000 perm   2 sec   (4165 perm/sec)   p_kst 7.508000e-01   p_cons 5.947000e-01   p_joint 8.373000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY5.12_3870_10000_0.7508_0.5947_0.8373.png
                gene_name: ADCY5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 13 percent done.
ADCY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
ADCY1   10000 perm   2 sec   (4100 perm/sec)   p_kst 2.481000e-01   p_cons 3.632000e-01   p_joint 2.830000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY1.10_3440_10000_0.2481_0.3632_0.283.png
                gene_name: ADCY1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 14 percent done.
ADCY6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
Cons ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
ADCY6   10000 perm   2 sec   (4098 perm/sec)   p_kst 2.052000e-01   p_cons 2.860000e-02   p_joint 5.090000e-02

Joint ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
Cons ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
KS ci ratio: 5.438474e-02	ci left: 2.005615e-01	ci right 2.118241e-01	k: 4123	n:20000
ADCY6   20000 perm   5 sec   (3752 perm/sec)   p_kst 2.061500e-01   p_cons 3.075000e-02   p_joint 6.375000e-02

Joint ci ratio: 9.973935e-02	ci left: 4.651929e-02	ci right 5.143519e-02	k: 1468	n:30000
Cons ci ratio: 1.270970e-01	ci left: 2.877686e-02	ci right 3.271471e-02	k: 921	n:30000
KS ci ratio: 4.432841e-02	ci left: 2.021627e-01	ci right 2.113608e-01	k: 6202	n:30000
ADCY6   30000 perm   8 sec   (3620 perm/sec)   p_kst 2.067333e-01   p_cons 3.070000e-02   p_joint 4.893333e-02

Joint ci ratio: 7.542806e-02	ci left: 6.085932e-02	ci right 6.565433e-02	k: 2529	n:40000
Cons ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
KS ci ratio: 3.830982e-02	ci left: 2.034604e-01	ci right 2.114321e-01	k: 8297	n:40000
ADCY6   40000 perm   11 sec   (3530 perm/sec)   p_kst 2.074250e-01   p_cons 2.995000e-02   p_joint 6.322500e-02

Joint ci ratio: 7.759764e-02	ci left: 4.667257e-02	ci right 5.046006e-02	k: 2427	n:50000
Cons ci ratio: 1.048790e-01	ci left: 2.575272e-02	ci right 2.862253e-02	k: 1358	n:50000
KS ci ratio: 3.437518e-02	ci left: 2.028398e-01	ci right 2.099543e-01	k: 10319	n:50000
ADCY6   50000 perm   14 sec   (3450 perm/sec)   p_kst 2.063800e-01   p_cons 2.716000e-02   p_joint 4.854000e-02

Joint ci ratio: 6.951283e-02	ci left: 4.858100e-02	ci right 5.209599e-02	k: 3019	n:60000
Cons ci ratio: 9.594695e-02	ci left: 2.576650e-02	ci right 2.837951e-02	k: 1623	n:60000
KS ci ratio: 3.170463e-02	ci left: 1.998208e-01	ci right 2.062747e-01	k: 12182	n:60000
ADCY6   60000 perm   18 sec   (3394 perm/sec)   p_kst 2.030333e-01   p_cons 2.705000e-02   p_joint 5.031667e-02

Outputting figure to mutsig2_images.part000000000004/ADCY6.10_3591_60000_0.20303_0.02705_0.050317.png
                gene_name: ADCY6
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 16 percent done.
ADAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
Cons ci ratio: 8.296339e-02	ci left: 1.748744e-01	ci right 1.901110e-01	k: 1824	n:10000
KS ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
ADAR   10000 perm   2 sec   (4205 perm/sec)   p_kst 4.043000e-01   p_cons 1.824000e-01   p_joint 2.560000e-01

Outputting figure to mutsig2_images.part000000000004/ADAR.9_3741_10000_0.4043_0.1824_0.256.png
                gene_name: ADAR
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 17 percent done.
ADH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
Cons ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
KS ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
ADH1B   10000 perm   2 sec   (6597 perm/sec)   p_kst 6.691000e-01   p_cons 2.951000e-01   p_joint 5.895000e-01

Outputting figure to mutsig2_images.part000000000004/ADH1B.9_1164_10000_0.6691_0.2951_0.5895.png
                gene_name: ADH1B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 19 percent done.
ADH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
Cons ci ratio: 5.067232e-02	ci left: 3.648027e-01	ci right 3.838706e-01	k: 3743	n:10000
KS ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
ADH6   10000 perm   2 sec   (5670 perm/sec)   p_kst 1.686000e-01   p_cons 3.743000e-01   p_joint 2.478000e-01

Outputting figure to mutsig2_images.part000000000004/ADH6.8_1168_10000_0.1686_0.3743_0.2478.png
                gene_name: ADH6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 21 percent done.
ADNP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
Cons ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
KS ci ratio: 5.448234e-02	ci left: 3.317063e-01	ci right 3.503864e-01	k: 3410	n:10000
ADNP2   10000 perm   2 sec   (4080 perm/sec)   p_kst 3.410000e-01   p_cons 3.698000e-01   p_joint 4.187000e-01

Outputting figure to mutsig2_images.part000000000004/ADNP2.8_3408_10000_0.341_0.3698_0.4187.png
                gene_name: ADNP2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 22 percent done.
ADCY7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
KS ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
ADCY7   10000 perm   2 sec   (4378 perm/sec)   p_kst 7.510000e-01   p_cons 6.802000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCY7.7_3343_10000_0.751_0.6802_1.png
                gene_name: ADCY7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
ADH1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
ADH1C   10000 perm   2 sec   (5486 perm/sec)   p_kst 6.923000e-01   p_cons 6.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADH1C.7_1164_10000_0.6923_0.6614_1.png
                gene_name: ADH1C
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
AFAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
KS ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
AFAP1L2   10000 perm   2 sec   (4958 perm/sec)   p_kst 8.246000e-01   p_cons 6.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AFAP1L2.7_2533_10000_0.8246_0.6666_1.png
                gene_name: AFAP1L2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ADAMTSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
Cons ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
ADAMTSL4   10000 perm   2 sec   (4789 perm/sec)   p_kst 3.419000e-01   p_cons 4.900000e-03   p_joint 4.560000e-02

Joint ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
Cons ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
KS ci ratio: 3.858916e-02	ci left: 3.337321e-01	ci right 3.469144e-01	k: 6806	n:20000
ADAMTSL4   20000 perm   5 sec   (4259 perm/sec)   p_kst 3.403000e-01   p_cons 6.350000e-03   p_joint 3.070000e-02

Joint ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
Cons ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
KS ci ratio: 3.117977e-02	ci left: 3.396526e-01	ci right 3.504441e-01	k: 10351	n:30000
ADAMTSL4   30000 perm   7 sec   (4071 perm/sec)   p_kst 3.450333e-01   p_cons 5.966667e-03   p_joint 2.240000e-02

Joint ci ratio: 1.743832e-01	ci left: 1.138637e-02	ci right 1.358525e-02	k: 498	n:40000
Cons ci ratio: 2.496684e-01	ci left: 5.360479e-03	ci right 6.912532e-03	k: 244	n:40000
KS ci ratio: 2.696318e-02	ci left: 3.410381e-01	ci right 3.503843e-01	k: 13828	n:40000
ADAMTSL4   40000 perm   10 sec   (3961 perm/sec)   p_kst 3.457000e-01   p_cons 6.100000e-03   p_joint 1.245000e-02

Joint ci ratio: 9.804437e-02	ci left: 2.945906e-02	ci right 3.251571e-02	k: 1548	n:50000
Cons ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
KS ci ratio: 2.410621e-02	ci left: 3.417298e-01	ci right 3.500881e-01	k: 17295	n:50000
ADAMTSL4   50000 perm   13 sec   (3871 perm/sec)   p_kst 3.459000e-01   p_cons 6.160000e-03   p_joint 3.096000e-02

Joint ci ratio: 1.047686e-01	ci left: 2.160420e-02	ci right 2.400893e-02	k: 1367	n:60000
Cons ci ratio: 2.028844e-01	ci left: 5.555911e-03	ci right 6.825899e-03	k: 370	n:60000
KS ci ratio: 2.201088e-02	ci left: 3.419934e-01	ci right 3.496215e-01	k: 20748	n:60000
ADAMTSL4   60000 perm   16 sec   (3790 perm/sec)   p_kst 3.458000e-01   p_cons 6.166667e-03   p_joint 2.278333e-02

Joint ci ratio: 9.878527e-02	ci left: 2.091214e-02	ci right 2.309916e-02	k: 1539	n:70000
Cons ci ratio: 1.850238e-01	ci left: 5.781767e-03	ci right 6.973992e-03	k: 445	n:70000
KS ci ratio: 2.045114e-02	ci left: 3.406655e-01	ci right 3.477188e-01	k: 24093	n:70000
ADAMTSL4   70000 perm   19 sec   (3707 perm/sec)   p_kst 3.441857e-01   p_cons 6.357143e-03   p_joint 2.198571e-02

Joint ci ratio: 8.424607e-02	ci left: 2.523878e-02	ci right 2.747075e-02	k: 2107	n:80000
Cons ci ratio: 1.708474e-01	ci left: 5.978786e-03	ci right 7.107448e-03	k: 522	n:80000
KS ci ratio: 1.911441e-02	ci left: 3.412689e-01	ci right 3.478674e-01	k: 27565	n:80000
ADAMTSL4   80000 perm   22 sec   (3641 perm/sec)   p_kst 3.445625e-01   p_cons 6.525000e-03   p_joint 2.633750e-02

Joint ci ratio: 8.808052e-02	ci left: 2.058403e-02	ci right 2.249143e-02	k: 1937	n:90000
Cons ci ratio: 1.599010e-01	ci left: 6.102728e-03	ci right 7.173888e-03	k: 596	n:90000
KS ci ratio: 1.800783e-02	ci left: 3.417940e-01	ci right 3.480160e-01	k: 31041	n:90000
ADAMTSL4   90000 perm   25 sec   (3581 perm/sec)   p_kst 3.449000e-01   p_cons 6.622222e-03   p_joint 2.152222e-02

Joint ci ratio: 7.795886e-02	ci left: 2.369778e-02	ci right 2.562993e-02	k: 2465	n:100000
Cons ci ratio: 1.517339e-01	ci left: 6.126738e-03	ci right 7.142196e-03	k: 662	n:100000
KS ci ratio: 1.713949e-02	ci left: 3.404865e-01	ci right 3.463826e-01	k: 34343	n:100000
ADAMTSL4   100000 perm   28 sec   (3525 perm/sec)   p_kst 3.434300e-01   p_cons 6.620000e-03   p_joint 2.465000e-02

Joint ci ratio: 7.117360e-02	ci left: 2.588037e-02	ci right 2.779923e-02	k: 2951	n:110000
Cons ci ratio: 1.458142e-01	ci left: 6.051136e-03	ci right 7.011524e-03	k: 717	n:110000
KS ci ratio: 1.636343e-02	ci left: 3.400310e-01	ci right 3.456500e-01	k: 37712	n:110000
ADAMTSL4   110000 perm   32 sec   (3473 perm/sec)   p_kst 3.428364e-01   p_cons 6.518182e-03   p_joint 2.682727e-02

Joint ci ratio: 7.339947e-02	ci left: 2.236382e-02	ci right 2.407600e-02	k: 2785	n:120000
Cons ci ratio: 1.388301e-01	ci left: 6.141611e-03	ci right 7.065810e-03	k: 791	n:120000
KS ci ratio: 1.582084e-02	ci left: 3.357642e-01	ci right 3.411269e-01	k: 40613	n:120000
ADAMTSL4   120000 perm   35 sec   (3422 perm/sec)   p_kst 3.384417e-01   p_cons 6.591667e-03   p_joint 2.320833e-02

Joint ci ratio: 7.310537e-02	ci left: 2.084681e-02	ci right 2.243616e-02	k: 2812	n:130000
Cons ci ratio: 1.337767e-01	ci left: 6.122407e-03	ci right 7.007512e-03	k: 852	n:130000
KS ci ratio: 1.519013e-02	ci left: 3.361655e-01	ci right 3.413186e-01	k: 44036	n:130000
ADAMTSL4   130000 perm   39 sec   (3370 perm/sec)   p_kst 3.387385e-01   p_cons 6.553846e-03   p_joint 2.163077e-02

Joint ci ratio: 7.341654e-02	ci left: 1.922393e-02	ci right 2.069605e-02	k: 2793	n:140000
Cons ci ratio: 1.290956e-01	ci left: 6.120297e-03	ci right 6.971763e-03	k: 915	n:140000
KS ci ratio: 1.464655e-02	ci left: 3.359854e-01	ci right 3.409498e-01	k: 47385	n:140000
ADAMTSL4   140000 perm   42 sec   (3320 perm/sec)   p_kst 3.384643e-01   p_cons 6.535714e-03   p_joint 1.995000e-02

Joint ci ratio: 6.809786e-02	ci left: 2.087680e-02	ci right 2.235510e-02	k: 3241	n:150000
Cons ci ratio: 1.251960e-01	ci left: 6.086640e-03	ci right 6.905945e-03	k: 973	n:150000
KS ci ratio: 1.415006e-02	ci left: 3.360652e-01	ci right 3.408610e-01	k: 50769	n:150000
ADAMTSL4   150000 perm   46 sec   (3272 perm/sec)   p_kst 3.384600e-01   p_cons 6.486667e-03   p_joint 2.160667e-02

Joint ci ratio: 6.051383e-02	ci left: 2.478233e-02	ci right 2.633493e-02	k: 4088	n:160000
Cons ci ratio: 1.216297e-01	ci left: 6.057529e-03	ci right 6.848016e-03	k: 1031	n:160000
KS ci ratio: 1.372039e-02	ci left: 3.355011e-01	ci right 3.401423e-01	k: 54051	n:160000
ADAMTSL4   160000 perm   50 sec   (3228 perm/sec)   p_kst 3.378188e-01   p_cons 6.443750e-03   p_joint 2.555000e-02

Joint ci ratio: 6.352875e-02	ci left: 2.120950e-02	ci right 2.260687e-02	k: 3723	n:170000
Cons ci ratio: 1.182426e-01	ci left: 6.043554e-03	ci right 6.808719e-03	k: 1091	n:170000
KS ci ratio: 1.330239e-02	ci left: 3.358511e-01	ci right 3.403544e-01	k: 57477	n:170000
ADAMTSL4   170000 perm   53 sec   (3184 perm/sec)   p_kst 3.381000e-01   p_cons 6.417647e-03   p_joint 2.190000e-02

Joint ci ratio: 5.611564e-02	ci left: 2.565326e-02	ci right 2.713982e-02	k: 4750	n:180000
Cons ci ratio: 1.148231e-01	ci left: 6.063784e-03	ci right 6.807802e-03	k: 1157	n:180000
KS ci ratio: 1.292391e-02	ci left: 3.360420e-01	ci right 3.404187e-01	k: 60881	n:180000
ADAMTSL4   180000 perm   57 sec   (3142 perm/sec)   p_kst 3.382278e-01   p_cons 6.427778e-03   p_joint 2.638889e-02

Joint ci ratio: 5.985822e-02	ci left: 2.141253e-02	ci right 2.273895e-02	k: 4193	n:190000
Cons ci ratio: 1.120068e-01	ci left: 6.046351e-03	ci right 6.768832e-03	k: 1216	n:190000
KS ci ratio: 1.259392e-02	ci left: 3.355786e-01	ci right 3.398369e-01	k: 64164	n:190000
ADAMTSL4   190000 perm   61 sec   (3101 perm/sec)   p_kst 3.377053e-01   p_cons 6.400000e-03   p_joint 2.206842e-02

Joint ci ratio: 5.866089e-02	ci left: 2.119894e-02	ci right 2.248497e-02	k: 4367	n:200000
Cons ci ratio: 1.090873e-01	ci left: 6.064913e-03	ci right 6.769508e-03	k: 1282	n:200000
KS ci ratio: 1.227080e-02	ci left: 3.357870e-01	ci right 3.399377e-01	k: 67572	n:200000
ADAMTSL4   200000 perm   65 sec   (3060 perm/sec)   p_kst 3.378600e-01   p_cons 6.410000e-03   p_joint 2.183500e-02

Joint ci ratio: 5.735851e-02	ci left: 2.113271e-02	ci right 2.238531e-02	k: 4568	n:210000
Cons ci ratio: 1.067438e-01	ci left: 6.040205e-03	ci right 6.725908e-03	k: 1339	n:210000
KS ci ratio: 1.197261e-02	ci left: 3.359292e-01	ci right 3.399801e-01	k: 70970	n:210000
ADAMTSL4   210000 perm   70 sec   (3020 perm/sec)   p_kst 3.379524e-01   p_cons 6.376190e-03   p_joint 2.175238e-02

Joint ci ratio: 5.228007e-02	ci left: 2.426633e-02	ci right 2.557350e-02	k: 5481	n:220000
Cons ci ratio: 1.045451e-01	ci left: 6.017892e-03	ci right 6.686124e-03	k: 1396	n:220000
KS ci ratio: 1.169313e-02	ci left: 3.361367e-01	ci right 3.400948e-01	k: 74385	n:220000
ADAMTSL4   220000 perm   74 sec   (2983 perm/sec)   p_kst 3.381136e-01   p_cons 6.345455e-03   p_joint 2.491364e-02

Joint ci ratio: 5.144097e-02	ci left: 2.399223e-02	ci right 2.526327e-02	k: 5663	n:230000
Cons ci ratio: 1.021943e-01	ci left: 6.031549e-03	ci right 6.685333e-03	k: 1461	n:230000
KS ci ratio: 1.144424e-02	ci left: 3.358626e-01	ci right 3.397328e-01	k: 77693	n:230000
ADAMTSL4   230000 perm   78 sec   (2947 perm/sec)   p_kst 3.377957e-01   p_cons 6.352174e-03   p_joint 2.462174e-02

Joint ci ratio: 5.021547e-02	ci left: 2.414032e-02	ci right 2.538785e-02	k: 5942	n:240000
Cons ci ratio: 9.966740e-02	ci left: 6.084854e-03	ci right 6.727154e-03	k: 1536	n:240000
KS ci ratio: 1.120766e-02	ci left: 3.357288e-01	ci right 3.395168e-01	k: 81029	n:240000
ADAMTSL4   240000 perm   82 sec   (2911 perm/sec)   p_kst 3.376208e-01   p_cons 6.400000e-03   p_joint 2.475833e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTSL4.6_3368_240000_0.33762_0.0064_0.024758.png
                gene_name: ADAMTSL4
               theta_stop: 0.100 
                    nperm: 240000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0064 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0067 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 29 percent done.
ADARB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
Cons ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
ADARB1   10000 perm   2 sec   (5267 perm/sec)   p_kst 3.762000e-01   p_cons 6.609000e-01   p_joint 5.266000e-01

Outputting figure to mutsig2_images.part000000000004/ADARB1.6_2279_10000_0.3762_0.6609_0.5266.png
                gene_name: ADARB1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 30 percent done.
ADCY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
Cons ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
KS ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
ADCY4   10000 perm   2 sec   (4876 perm/sec)   p_kst 5.237000e-01   p_cons 9.458000e-01   p_joint 8.181000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY4.6_3334_10000_0.5237_0.9458_0.8181.png
                gene_name: ADCY4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 32 percent done.
ADCYAP1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
ADCYAP1R1   10000 perm   2 sec   (5740 perm/sec)   p_kst 4.255000e-01   p_cons 7.530000e-02   p_joint 2.445000e-01

Joint ci ratio: 6.077303e-02	ci left: 1.669410e-01	ci right 1.774545e-01	k: 3443	n:20000
Cons ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
KS ci ratio: 3.285596e-02	ci left: 4.089072e-01	ci right 4.226173e-01	k: 8315	n:20000
ADCYAP1R1   20000 perm   4 sec   (5042 perm/sec)   p_kst 4.157500e-01   p_cons 7.675000e-02   p_joint 1.721500e-01

Outputting figure to mutsig2_images.part000000000004/ADCYAP1R1.6_1467_20000_0.41575_0.07675_0.17215.png
                gene_name: ADCYAP1R1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
ADD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
ADD3   10000 perm   2 sec   (5345 perm/sec)   p_kst 8.559000e-01   p_cons 4.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADD3.6_2177_10000_0.8559_0.4935_1.png
                gene_name: ADD3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ADH1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
Cons ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
KS ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
ADH1A   10000 perm   2 sec   (6293 perm/sec)   p_kst 7.684000e-01   p_cons 6.220000e-02   p_joint 2.574000e-01

Joint ci ratio: 5.156868e-02	ci left: 2.183364e-01	ci right 2.299439e-01	k: 4482	n:20000
Cons ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
KS ci ratio: 1.513639e-02	ci left: 7.644063e-01	ci right 7.761151e-01	k: 15406	n:20000
ADH1A   20000 perm   4 sec   (5409 perm/sec)   p_kst 7.703000e-01   p_cons 6.030000e-02   p_joint 2.241000e-01

Joint ci ratio: 4.381249e-02	ci left: 2.059977e-01	ci right 2.152585e-01	k: 6318	n:30000
Cons ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
KS ci ratio: 1.245771e-02	ci left: 7.626439e-01	ci right 7.722376e-01	k: 23024	n:30000
ADH1A   30000 perm   6 sec   (5130 perm/sec)   p_kst 7.674667e-01   p_cons 6.033333e-02   p_joint 2.106000e-01

Outputting figure to mutsig2_images.part000000000004/ADH1A.6_1164_30000_0.76747_0.060333_0.2106.png
                gene_name: ADH1A
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
ADH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
ADH4   10000 perm   2 sec   (5585 perm/sec)   p_kst 1.547000e-01   p_cons 5.275000e-01   p_joint 2.402000e-01

Outputting figure to mutsig2_images.part000000000004/ADH4.6_1179_10000_0.1547_0.5275_0.2402.png
                gene_name: ADH4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
ADNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
Cons ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
KS ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
ADNP   10000 perm   2 sec   (4579 perm/sec)   p_kst 1.725000e-01   p_cons 5.160000e-02   p_joint 9.540000e-02

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
KS ci ratio: 6.092267e-02	ci left: 1.662495e-01	ci right 1.767461e-01	k: 3429	n:20000
ADNP   20000 perm   5 sec   (4161 perm/sec)   p_kst 1.714500e-01   p_cons 5.215000e-02   p_joint 8.780000e-02

Joint ci ratio: 8.686461e-02	ci left: 6.079887e-02	ci right 6.635268e-02	k: 1906	n:30000
Cons ci ratio: 9.393151e-02	ci left: 5.228377e-02	ci right 5.746953e-02	k: 1645	n:30000
KS ci ratio: 5.022127e-02	ci left: 1.645439e-01	ci right 1.730537e-01	k: 5063	n:30000
ADNP   30000 perm   8 sec   (3989 perm/sec)   p_kst 1.687667e-01   p_cons 5.483333e-02   p_joint 6.353333e-02

Outputting figure to mutsig2_images.part000000000004/ADNP.6_3321_30000_0.16877_0.054833_0.063533.png
                gene_name: ADNP
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 40 percent done.
AFF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KS ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
AFF3   10000 perm   2 sec   (4243 perm/sec)   p_kst 9.140000e-02   p_cons 3.977000e-01   p_joint 1.822000e-01

Joint ci ratio: 6.179443e-02	ci left: 1.622990e-01	ci right 1.726979e-01	k: 3349	n:20000
Cons ci ratio: 3.367422e-02	ci left: 3.970392e-01	ci right 4.106888e-01	k: 8077	n:20000
KS ci ratio: 9.041959e-02	ci left: 8.200290e-02	ci right 8.981798e-02	k: 1717	n:20000
AFF3   20000 perm   5 sec   (3841 perm/sec)   p_kst 8.585000e-02   p_cons 4.038500e-01   p_joint 1.674500e-01

Outputting figure to mutsig2_images.part000000000004/AFF3.6_3848_20000_0.08585_0.40385_0.16745.png
                gene_name: AFF3
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 41 percent done.
ADCY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
ADCY3   10000 perm   2 sec   (4532 perm/sec)   p_kst 2.338000e-01   p_cons 3.540000e-02   p_joint 4.270000e-02

Joint ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
Cons ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
KS ci ratio: 5.016427e-02	ci left: 2.279978e-01	ci right 2.397797e-01	k: 4677	n:20000
ADCY3   20000 perm   5 sec   (4108 perm/sec)   p_kst 2.338500e-01   p_cons 3.805000e-02   p_joint 4.305000e-02

Joint ci ratio: 1.144993e-01	ci left: 3.544322e-02	ci right 3.978025e-02	k: 1127	n:30000
Cons ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
KS ci ratio: 4.140598e-02	ci left: 2.252476e-01	ci right 2.348048e-01	k: 6900	n:30000
ADCY3   30000 perm   8 sec   (3936 perm/sec)   p_kst 2.300000e-01   p_cons 3.716667e-02   p_joint 3.756667e-02

Joint ci ratio: 9.936577e-02	ci left: 3.558613e-02	ci right 3.933140e-02	k: 1497	n:40000
Cons ci ratio: 1.000267e-01	ci left: 3.512255e-02	ci right 3.884506e-02	k: 1478	n:40000
KS ci ratio: 3.586966e-02	ci left: 2.257838e-01	ci right 2.340555e-01	k: 9196	n:40000
ADCY3   40000 perm   10 sec   (3832 perm/sec)   p_kst 2.299000e-01   p_cons 3.695000e-02   p_joint 3.742500e-02

Joint ci ratio: 7.724717e-02	ci left: 4.708483e-02	ci right 5.088775e-02	k: 2448	n:50000
Cons ci ratio: 8.963682e-02	ci left: 3.518627e-02	ci right 3.850778e-02	k: 1841	n:50000
KS ci ratio: 3.182989e-02	ci left: 2.290217e-01	ci right 2.364493e-01	k: 11636	n:50000
ADCY3   50000 perm   13 sec   (3742 perm/sec)   p_kst 2.327200e-01   p_cons 3.682000e-02   p_joint 4.896000e-02

Outputting figure to mutsig2_images.part000000000004/ADCY3.5_3519_50000_0.23272_0.03682_0.04896.png
                gene_name: ADCY3
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 43 percent done.
ADD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
ADD1   10000 perm   2 sec   (5569 perm/sec)   p_kst 5.710000e-01   p_cons 1.232000e-01   p_joint 4.053000e-01

Joint ci ratio: 3.873571e-02	ci left: 3.320403e-01	ci right 3.452067e-01	k: 6772	n:20000
Cons ci ratio: 7.204010e-02	ci left: 1.242852e-01	ci right 1.336230e-01	k: 2578	n:20000
KS ci ratio: 2.377784e-02	ci left: 5.691655e-01	ci right 5.829124e-01	k: 11521	n:20000
ADD1   20000 perm   4 sec   (4917 perm/sec)   p_kst 5.760500e-01   p_cons 1.289000e-01   p_joint 3.386000e-01

Outputting figure to mutsig2_images.part000000000004/ADD1.5_2401_20000_0.57605_0.1289_0.3386.png
                gene_name: ADD1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 44 percent done.
ADPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
Cons ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
KS ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
ADPRH   10000 perm   2 sec   (5986 perm/sec)   p_kst 4.566000e-01   p_cons 8.493000e-01   p_joint 6.601000e-01

Outputting figure to mutsig2_images.part000000000004/ADPRH.5_1086_10000_0.4566_0.8493_0.6601.png
                gene_name: ADPRH
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 46 percent done.
AEBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
Cons ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
KS ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
AEBP1   10000 perm   2 sec   (4721 perm/sec)   p_kst 6.570000e-02   p_cons 8.157000e-01   p_joint 2.443000e-01

Joint ci ratio: 6.593066e-02	ci left: 1.452254e-01	ci right 1.551765e-01	k: 3003	n:20000
Cons ci ratio: 1.361879e-02	ci left: 7.999957e-01	ci right 8.110154e-01	k: 16111	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
AEBP1   20000 perm   5 sec   (4238 perm/sec)   p_kst 6.190000e-02   p_cons 8.055500e-01   p_joint 1.501500e-01

Joint ci ratio: 5.673829e-02	ci left: 1.333582e-01	ci right 1.411788e-01	k: 4117	n:30000
Cons ci ratio: 1.112494e-02	ci left: 8.008740e-01	ci right 8.098668e-01	k: 24162	n:30000
KS ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
AEBP1   30000 perm   7 sec   (4046 perm/sec)   p_kst 6.186667e-02   p_cons 8.054000e-01   p_joint 1.372333e-01

Outputting figure to mutsig2_images.part000000000004/AEBP1.5_3561_30000_0.061867_0.8054_0.13723.png
                gene_name: AEBP1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 48 percent done.
ADARB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
ADARB2   10000 perm   2 sec   (5149 perm/sec)   p_kst 6.383000e-01   p_cons 6.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADARB2.4_2260_10000_0.6383_0.6851_1.png
                gene_name: ADARB2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ADCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
ADCK4   10000 perm   2 sec   (5703 perm/sec)   p_kst 4.095000e-01   p_cons 8.147000e-01   p_joint 5.948000e-01

Outputting figure to mutsig2_images.part000000000004/ADCK4.4_1691_10000_0.4095_0.8147_0.5948.png
                gene_name: ADCK4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 51 percent done.
ADD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
Cons ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
KS ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
ADD2   10000 perm   2 sec   (5258 perm/sec)   p_kst 2.382000e-01   p_cons 6.040000e-01   p_joint 5.041000e-01

Outputting figure to mutsig2_images.part000000000004/ADD2.4_2470_10000_0.2382_0.604_0.5041.png
                gene_name: ADD2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 52 percent done.
ADH5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
Cons ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
ADH5   10000 perm   2 sec   (6413 perm/sec)   p_kst 5.160000e-02   p_cons 1.186000e-01   p_joint 6.030000e-02

Joint ci ratio: 1.495754e-01	ci left: 3.071190e-02	ci right 3.572501e-02	k: 663	n:20000
Cons ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
KS ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
ADH5   20000 perm   4 sec   (5619 perm/sec)   p_kst 5.040000e-02   p_cons 1.301500e-01   p_joint 3.315000e-02

Joint ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
Cons ci ratio: 5.817940e-02	ci left: 1.275962e-01	ci right 1.352753e-01	k: 3942	n:30000
KS ci ratio: 9.913765e-02	ci left: 4.707254e-02	ci right 5.201516e-02	k: 1485	n:30000
ADH5   30000 perm   6 sec   (5305 perm/sec)   p_kst 4.950000e-02   p_cons 1.314000e-01   p_joint 2.830000e-02

Joint ci ratio: 1.074955e-01	ci left: 3.044286e-02	ci right 3.392549e-02	k: 1286	n:40000
Cons ci ratio: 5.037579e-02	ci left: 1.281531e-01	ci right 1.348005e-01	k: 5258	n:40000
KS ci ratio: 8.570445e-02	ci left: 4.756602e-02	ci right 5.184965e-02	k: 1987	n:40000
ADH5   40000 perm   8 sec   (5084 perm/sec)   p_kst 4.967500e-02   p_cons 1.314500e-01   p_joint 3.215000e-02

Joint ci ratio: 7.145063e-02	ci left: 5.474765e-02	ci right 5.882400e-02	k: 2838	n:50000
Cons ci ratio: 4.510002e-02	ci left: 1.282918e-01	ci right 1.342311e-01	k: 6562	n:50000
KS ci ratio: 7.660792e-02	ci left: 4.785056e-02	ci right 5.168193e-02	k: 2487	n:50000
ADH5   50000 perm   10 sec   (4932 perm/sec)   p_kst 4.974000e-02   p_cons 1.312400e-01   p_joint 5.676000e-02

Outputting figure to mutsig2_images.part000000000004/ADH5.3_1161_50000_0.04974_0.13124_0.05676.png
                gene_name: ADH5
               theta_stop: 0.077 
                    nperm: 50000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 54 percent done.
ADH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
Cons ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
KS ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
ADH7   10000 perm   2 sec   (5912 perm/sec)   p_kst 3.078000e-01   p_cons 2.030000e-01   p_joint 4.660000e-01

Outputting figure to mutsig2_images.part000000000004/ADH7.4_1279_10000_0.3078_0.203_0.466.png
                gene_name: ADH7
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 56 percent done.
ADIPOQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
KS ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
ADIPOQ   10000 perm   1 sec   (6742 perm/sec)   p_kst 9.425000e-01   p_cons 7.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADIPOQ.4_743_10000_0.9425_0.7736_1.png
                gene_name: ADIPOQ
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ADRA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
Cons ci ratio: 4.023461e-02	ci left: 4.770586e-01	ci right 4.967491e-01	k: 4869	n:10000
KS ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
ADRA1A   10000 perm   2 sec   (5475 perm/sec)   p_kst 1.610000e-01   p_cons 4.869000e-01   p_joint 2.416000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1A.4_1700_10000_0.161_0.4869_0.2416.png
                gene_name: ADRA1A
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 59 percent done.
ADRA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
Cons ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
KS ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
ADRA1B   10000 perm   2 sec   (5792 perm/sec)   p_kst 1.747000e-01   p_cons 3.671000e-01   p_joint 3.383000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1B.4_1571_10000_0.1747_0.3671_0.3383.png
                gene_name: ADRA1B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
ADRBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
ADRBK2   10000 perm   2 sec   (5419 perm/sec)   p_kst 6.623000e-01   p_cons 9.360000e-02   p_joint 3.026000e-01

Joint ci ratio: 3.401576e-02	ci left: 3.922034e-01	ci right 4.058260e-01	k: 7980	n:20000
Cons ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
KS ci ratio: 1.994718e-02	ci left: 6.521815e-01	ci right 6.653723e-01	k: 13176	n:20000
ADRBK2   20000 perm   4 sec   (4828 perm/sec)   p_kst 6.588000e-01   p_cons 9.110000e-02   p_joint 3.990000e-01

Outputting figure to mutsig2_images.part000000000004/ADRBK2.4_2151_20000_0.6588_0.0911_0.399.png
                gene_name: ADRBK2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 62 percent done.
AFG3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
AFG3L2   10000 perm   2 sec   (5162 perm/sec)   p_kst 4.410000e-02   p_cons 1.719000e-01   p_joint 5.230000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
KS ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
AFG3L2   20000 perm   4 sec   (4564 perm/sec)   p_kst 4.470000e-02   p_cons 1.718000e-01   p_joint 4.750000e-02

Joint ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
Cons ci ratio: 4.987801e-02	ci left: 1.664578e-01	ci right 1.750060e-01	k: 5121	n:30000
KS ci ratio: 1.047886e-01	ci left: 4.222667e-02	ci right 4.692870e-02	k: 1336	n:30000
AFG3L2   30000 perm   7 sec   (4344 perm/sec)   p_kst 4.453333e-02   p_cons 1.707000e-01   p_joint 4.280000e-02

Joint ci ratio: 8.586364e-02	ci left: 4.739459e-02	ci right 5.167111e-02	k: 1980	n:40000
Cons ci ratio: 4.309431e-02	ci left: 1.676935e-01	ci right 1.751042e-01	k: 6855	n:40000
KS ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
AFG3L2   40000 perm   9 sec   (4223 perm/sec)   p_kst 4.235000e-02   p_cons 1.713750e-01   p_joint 4.950000e-02

Outputting figure to mutsig2_images.part000000000004/AFG3L2.4_2462_40000_0.04235_0.17137_0.0495.png
                gene_name: AFG3L2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 63 percent done.
ADCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.303421e-02	ci left: 8.944660e-01	ci right 9.062996e-01	k: 9005	n:10000
KS ci ratio: 1.801178e-02	ci left: 8.181200e-01	ci right 8.330898e-01	k: 8257	n:10000
ADCK1   10000 perm   2 sec   (6147 perm/sec)   p_kst 8.257000e-01   p_cons 9.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCK1.3_1612_10000_0.8257_0.9005_1.png
                gene_name: ADCK1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ADCY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
KS ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
ADCY9   10000 perm   2 sec   (4928 perm/sec)   p_kst 4.983000e-01   p_cons 4.400000e-01   p_joint 8.751000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY9.3_4102_10000_0.4983_0.44_0.8751.png
                gene_name: ADCY9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 67 percent done.
ADIPOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
Cons ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
KS ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
ADIPOR1   10000 perm   2 sec   (6106 perm/sec)   p_kst 6.670000e-01   p_cons 1.200000e-01   p_joint 5.566000e-01

Joint ci ratio: 1.621442e-02	ci left: 7.389494e-01	ci right 7.510793e-01	k: 14901	n:20000
Cons ci ratio: 7.504316e-02	ci left: 1.155268e-01	ci right 1.245840e-01	k: 2400	n:20000
KS ci ratio: 1.947227e-02	ci left: 6.629818e-01	ci right 6.760689e-01	k: 13391	n:20000
ADIPOR1   20000 perm   4 sec   (5386 perm/sec)   p_kst 6.695500e-01   p_cons 1.200000e-01   p_joint 7.450500e-01

Outputting figure to mutsig2_images.part000000000004/ADIPOR1.3_1156_20000_0.66955_0.12_0.74505.png
                gene_name: ADIPOR1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 68 percent done.
ADRA2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
KS ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
ADRA2C   10000 perm   2 sec   (6083 perm/sec)   p_kst 6.022000e-01   p_cons 7.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRA2C.3_1393_10000_0.6022_0.7883_1.png
                gene_name: ADRA2C
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ADRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
KS ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
ADRB3   10000 perm   2 sec   (6437 perm/sec)   p_kst 6.132000e-01   p_cons 8.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRB3.3_1235_10000_0.6132_0.8087_1.png
                gene_name: ADRB3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ADRBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
Cons ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
KS ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
ADRBK1   10000 perm   2 sec   (5516 perm/sec)   p_kst 1.938000e-01   p_cons 8.838000e-01   p_joint 3.771000e-01

Outputting figure to mutsig2_images.part000000000004/ADRBK1.3_2154_10000_0.1938_0.8838_0.3771.png
                gene_name: ADRBK1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 73 percent done.
AFAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
KS ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
AFAP1L1   10000 perm   2 sec   (5446 perm/sec)   p_kst 8.027000e-01   p_cons 5.740000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000004/AFAP1L1.3_2383_10000_0.8027_0.574_0.8253.png
                gene_name: AFAP1L1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 75 percent done.
AFF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
Cons ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
KS ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
AFF1   10000 perm   2 sec   (4752 perm/sec)   p_kst 4.620000e-02   p_cons 2.030000e-01   p_joint 9.890000e-02

Joint ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
Cons ci ratio: 5.356764e-02	ci left: 2.055111e-01	ci right 2.168730e-01	k: 4223	n:20000
KS ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
AFF1   20000 perm   5 sec   (4265 perm/sec)   p_kst 4.420000e-02   p_cons 2.111500e-01   p_joint 8.715000e-02

Joint ci ratio: 7.878220e-02	ci left: 7.322218e-02	ci right 7.926019e-02	k: 2286	n:30000
Cons ci ratio: 4.230247e-02	ci left: 2.178038e-01	ci right 2.272500e-01	k: 6675	n:30000
KS ci ratio: 1.053673e-01	ci left: 4.177175e-02	ci right 4.645039e-02	k: 1322	n:30000
AFF1   30000 perm   7 sec   (4103 perm/sec)   p_kst 4.406667e-02   p_cons 2.225000e-01   p_joint 7.620000e-02

Joint ci ratio: 7.756100e-02	ci left: 5.769218e-02	ci right 6.237195e-02	k: 2400	n:40000
Cons ci ratio: 3.783285e-02	ci left: 2.075811e-01	ci right 2.156109e-01	k: 8463	n:40000
KS ci ratio: 8.830621e-02	ci left: 4.487300e-02	ci right 4.904308e-02	k: 1877	n:40000
AFF1   40000 perm   10 sec   (3995 perm/sec)   p_kst 4.692500e-02   p_cons 2.115750e-01   p_joint 6.000000e-02

Outputting figure to mutsig2_images.part000000000004/AFF1.3_3758_40000_0.046925_0.21158_0.06.png
                gene_name: AFF1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 76 percent done.
AFF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
AFF4   10000 perm   2 sec   (5084 perm/sec)   p_kst 4.590000e-01   p_cons 5.990000e-02   p_joint 1.256000e-01

Joint ci ratio: 4.037854e-02	ci left: 3.137853e-01	ci right 3.267670e-01	k: 6405	n:20000
Cons ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
KS ci ratio: 2.896106e-02	ci left: 4.711058e-01	ci right 4.850006e-01	k: 9561	n:20000
AFF4   20000 perm   4 sec   (4503 perm/sec)   p_kst 4.780500e-01   p_cons 6.185000e-02   p_joint 3.202500e-01

Joint ci ratio: 2.969975e-02	ci left: 3.618746e-01	ci right 3.728178e-01	k: 11020	n:30000
Cons ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
KS ci ratio: 2.366698e-02	ci left: 4.719668e-01	ci right 4.833042e-01	k: 14329	n:30000
AFF4   30000 perm   7 sec   (4311 perm/sec)   p_kst 4.776333e-01   p_cons 6.140000e-02   p_joint 3.673333e-01

Outputting figure to mutsig2_images.part000000000004/AFF4.3_3572_30000_0.47763_0.0614_0.36733.png
                gene_name: AFF4
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 78 percent done.
ADAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
ADAP1   10000 perm   1 sec   (6899 perm/sec)   p_kst 3.023000e-01   p_cons 3.087000e-01   p_joint 5.589000e-01

Outputting figure to mutsig2_images.part000000000004/ADAP1.2_1169_10000_0.3023_0.3087_0.5589.png
                gene_name: ADAP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 79 percent done.
ADAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
KS ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
ADAT1   10000 perm   2 sec   (6240 perm/sec)   p_kst 9.940000e-02   p_cons 3.848000e-01   p_joint 2.683000e-01

Joint ci ratio: 3.717577e-02	ci left: 3.506050e-01	ci right 3.639365e-01	k: 7145	n:20000
Cons ci ratio: 3.462984e-02	ci left: 3.836802e-01	ci right 3.972517e-01	k: 7809	n:20000
KS ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
ADAT1   20000 perm   4 sec   (5468 perm/sec)   p_kst 9.920000e-02   p_cons 3.904500e-01   p_joint 3.572500e-01

Outputting figure to mutsig2_images.part000000000004/ADAT1.2_1545_20000_0.0992_0.39045_0.35725.png
                gene_name: ADAT1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 81 percent done.
ADC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
Cons ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
ADC   10000 perm   1 sec   (6731 perm/sec)   p_kst 1.050000e-02   p_cons 9.337000e-01   p_joint 3.833000e-01

Joint ci ratio: 4.794567e-02	ci left: 2.444569e-01	ci right 2.565157e-01	k: 5009	n:20000
Cons ci ratio: 6.810751e-03	ci left: 9.397996e-01	ci right 9.462709e-01	k: 18862	n:20000
KS ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
ADC   20000 perm   3 sec   (5786 perm/sec)   p_kst 1.050000e-02   p_cons 9.431000e-01   p_joint 2.504500e-01

Joint ci ratio: 3.862976e-02	ci left: 2.505719e-01	ci right 2.604755e-01	k: 7665	n:30000
Cons ci ratio: 5.603350e-03	ci left: 9.395676e-01	ci right 9.448797e-01	k: 28268	n:30000
KS ci ratio: 2.211240e-01	ci left: 9.219947e-03	ci right 1.154301e-02	k: 310	n:30000
ADC   30000 perm   6 sec   (5448 perm/sec)   p_kst 1.033333e-02   p_cons 9.422667e-01   p_joint 2.555000e-01

Joint ci ratio: 3.701054e-02	ci left: 2.149551e-01	ci right 2.230857e-01	k: 8760	n:40000
Cons ci ratio: 4.829673e-03	ci left: 9.404539e-01	ci right 9.450315e-01	k: 37711	n:40000
KS ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
ADC   40000 perm   8 sec   (5258 perm/sec)   p_kst 1.017500e-02   p_cons 9.427750e-01   p_joint 2.190000e-01

Joint ci ratio: 3.342244e-02	ci left: 2.121411e-01	ci right 2.193719e-01	k: 10787	n:50000
Cons ci ratio: 4.290556e-03	ci left: 9.414404e-01	ci right 9.455080e-01	k: 47175	n:50000
KS ci ratio: 1.739011e-01	ci left: 9.184683e-03	ci right 1.095289e-02	k: 502	n:50000
ADC   50000 perm   10 sec   (5105 perm/sec)   p_kst 1.004000e-02   p_cons 9.435000e-01   p_joint 2.157400e-01

Joint ci ratio: 3.101754e-02	ci left: 2.069621e-01	ci right 2.134993e-01	k: 12613	n:60000
Cons ci ratio: 3.917247e-03	ci left: 9.416058e-01	ci right 9.453179e-01	k: 56609	n:60000
KS ci ratio: 1.588293e-01	ci left: 9.251315e-03	ci right 1.086327e-02	k: 602	n:60000
ADC   60000 perm   12 sec   (4958 perm/sec)   p_kst 1.003333e-02   p_cons 9.434833e-01   p_joint 2.102167e-01

Joint ci ratio: 2.887492e-02	ci left: 2.053961e-01	ci right 2.114281e-01	k: 14588	n:70000
Cons ci ratio: 3.621180e-03	ci left: 9.419089e-01	ci right 9.453399e-01	k: 66055	n:70000
KS ci ratio: 1.477385e-01	ci left: 9.221087e-03	ci right 1.070567e-02	k: 696	n:70000
ADC   70000 perm   14 sec   (4839 perm/sec)   p_kst 9.942857e-03   p_cons 9.436429e-01   p_joint 2.084000e-01

Joint ci ratio: 2.692045e-02	ci left: 2.066843e-01	ci right 2.123367e-01	k: 16760	n:80000
Cons ci ratio: 3.390218e-03	ci left: 9.419283e-01	ci right 9.451394e-01	k: 75484	n:80000
KS ci ratio: 1.358537e-01	ci left: 9.599835e-03	ci right 1.101102e-02	k: 823	n:80000
ADC   80000 perm   17 sec   (4735 perm/sec)   p_kst 1.028750e-02   p_cons 9.435500e-01   p_joint 2.095000e-01

Joint ci ratio: 2.535120e-02	ci left: 2.072322e-01	ci right 2.125643e-01	k: 18890	n:90000
Cons ci ratio: 3.200129e-03	ci left: 9.418929e-01	ci right 9.449229e-01	k: 84908	n:90000
KS ci ratio: 1.267102e-01	ci left: 9.855089e-03	ci right 1.119896e-02	k: 946	n:90000
ADC   90000 perm   19 sec   (4640 perm/sec)   p_kst 1.051111e-02   p_cons 9.434222e-01   p_joint 2.098889e-01

Joint ci ratio: 2.447368e-02	ci left: 2.016653e-01	ci right 2.066719e-01	k: 20416	n:100000
Cons ci ratio: 3.037087e-03	ci left: 9.419297e-01	ci right 9.448046e-01	k: 94338	n:100000
KS ci ratio: 1.209197e-01	ci left: 9.770757e-03	ci right 1.103788e-02	k: 1039	n:100000
ADC   100000 perm   22 sec   (4545 perm/sec)   p_kst 1.039000e-02   p_cons 9.433800e-01   p_joint 2.041600e-01

Joint ci ratio: 2.339674e-02	ci left: 2.009250e-01	ci right 2.056907e-01	k: 22363	n:110000
Cons ci ratio: 2.892970e-03	ci left: 9.421009e-01	ci right 9.448393e-01	k: 103783	n:110000
KS ci ratio: 1.151400e-01	ci left: 9.826541e-03	ci right 1.103584e-02	k: 1146	n:110000
ADC   110000 perm   25 sec   (4452 perm/sec)   p_kst 1.041818e-02   p_cons 9.434818e-01   p_joint 2.033000e-01

Joint ci ratio: 2.232952e-02	ci left: 2.020550e-01	ci right 2.066260e-01	k: 24520	n:120000
Cons ci ratio: 2.766074e-03	ci left: 9.423051e-01	ci right 9.449234e-01	k: 113235	n:120000
KS ci ratio: 1.104289e-01	ci left: 9.817488e-03	ci right 1.097302e-02	k: 1246	n:120000
ADC   120000 perm   28 sec   (4362 perm/sec)   p_kst 1.038333e-02   p_cons 9.436250e-01   p_joint 2.043333e-01

Joint ci ratio: 2.127669e-02	ci left: 2.048386e-01	ci right 2.092514e-01	k: 26915	n:130000
Cons ci ratio: 2.651056e-03	ci left: 9.426198e-01	ci right 9.451296e-01	k: 122705	n:130000
KS ci ratio: 1.053085e-01	ci left: 9.990463e-03	ci right 1.110845e-02	k: 1370	n:130000
ADC   130000 perm   30 sec   (4278 perm/sec)   p_kst 1.053846e-02   p_cons 9.438846e-01   p_joint 2.070385e-01

Joint ci ratio: 2.047844e-02	ci left: 2.053072e-01	ci right 2.095621e-01	k: 29040	n:140000
Cons ci ratio: 2.554585e-03	ci left: 9.426674e-01	ci right 9.450856e-01	k: 132144	n:140000
KS ci ratio: 1.010794e-01	ci left: 1.009103e-02	ci right 1.117224e-02	k: 1487	n:140000
ADC   140000 perm   33 sec   (4191 perm/sec)   p_kst 1.062143e-02   p_cons 9.438857e-01   p_joint 2.074286e-01

Joint ci ratio: 2.031856e-02	ci left: 1.967828e-01	ci right 2.008288e-01	k: 29820	n:150000
Cons ci ratio: 2.475379e-03	ci left: 9.423870e-01	ci right 9.447292e-01	k: 141535	n:150000
KS ci ratio: 9.806586e-02	ci left: 1.002284e-02	ci right 1.106288e-02	k: 1580	n:150000
ADC   150000 perm   36 sec   (4113 perm/sec)   p_kst 1.053333e-02   p_cons 9.435667e-01   p_joint 1.988000e-01

Outputting figure to mutsig2_images.part000000000004/ADC.2_1419_150000_0.010533_0.94357_0.1988.png
                gene_name: ADC
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 83 percent done.
ADCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 6.868280e-02	ci left: 2.371885e-01	ci right 2.541599e-01	k: 2456	n:10000
ADCK2   10000 perm   2 sec   (6341 perm/sec)   p_kst 2.456000e-01   p_cons 4.030000e-02   p_joint 1.601000e-01

Joint ci ratio: 8.425854e-02	ci left: 9.352072e-02	ci right 1.017967e-01	k: 1952	n:20000
Cons ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
KS ci ratio: 4.907628e-02	ci left: 2.358788e-01	ci right 2.477964e-01	k: 4836	n:20000
ADCK2   20000 perm   4 sec   (5565 perm/sec)   p_kst 2.418000e-01   p_cons 4.245000e-02   p_joint 9.760000e-02

Joint ci ratio: 5.391696e-02	ci left: 1.457461e-01	ci right 1.538552e-01	k: 4493	n:30000
Cons ci ratio: 1.068545e-01	ci left: 4.063475e-02	ci right 4.525430e-02	k: 1287	n:30000
KS ci ratio: 4.016383e-02	ci left: 2.361358e-01	ci right 2.458477e-01	k: 7229	n:30000
ADCK2   30000 perm   6 sec   (5266 perm/sec)   p_kst 2.409667e-01   p_cons 4.290000e-02   p_joint 1.497667e-01

Joint ci ratio: 6.817117e-02	ci left: 7.374130e-02	ci right 7.897040e-02	k: 3053	n:40000
Cons ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
KS ci ratio: 3.485918e-02	ci left: 2.359951e-01	ci right 2.443927e-01	k: 9607	n:40000
ADCK2   40000 perm   8 sec   (5071 perm/sec)   p_kst 2.401750e-01   p_cons 4.280000e-02   p_joint 7.632500e-02

Outputting figure to mutsig2_images.part000000000004/ADCK2.2_1913_40000_0.24017_0.0428_0.076325.png
                gene_name: ADCK2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 84 percent done.
ADHFE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
KS ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
ADHFE1   10000 perm   2 sec   (6386 perm/sec)   p_kst 4.876000e-01   p_cons 9.312000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADHFE1.2_1460_10000_0.4876_0.9312_1.png
                gene_name: ADHFE1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ADORA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
Cons ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
KS ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
ADORA3   10000 perm   2 sec   (6030 perm/sec)   p_kst 5.413000e-01   p_cons 8.511000e-01   p_joint 6.096000e-01

Outputting figure to mutsig2_images.part000000000004/ADORA3.2_1790_10000_0.5413_0.8511_0.6096.png
                gene_name: ADORA3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 87 percent done.
ADPRHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487993e-02	ci left: 8.674390e-01	ci right 8.805423e-01	k: 8741	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
ADPRHL2   10000 perm   2 sec   (6546 perm/sec)   p_kst 3.473000e-01   p_cons 6.159000e-01   p_joint 8.741000e-01

Outputting figure to mutsig2_images.part000000000004/ADPRHL2.2_1116_10000_0.3473_0.6159_0.8741.png
                gene_name: ADPRHL2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 89 percent done.
ADRA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
ADRA1D   10000 perm   2 sec   (6202 perm/sec)   p_kst 8.152000e-01   p_cons 6.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRA1D.2_1727_10000_0.8152_0.6177_1.png
                gene_name: ADRA1D
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ADRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
KS ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
ADRB2   10000 perm   2 sec   (6530 perm/sec)   p_kst 8.087000e-01   p_cons 7.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRB2.2_1246_10000_0.8087_0.7667_1.png
                gene_name: ADRB2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
AEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
AEN   10000 perm   1 sec   (7089 perm/sec)   p_kst 4.997000e-01   p_cons 2.419000e-01   p_joint 2.617000e-01

Outputting figure to mutsig2_images.part000000000004/AEN.2_990_10000_0.4997_0.2419_0.2617.png
                gene_name: AEN
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 94 percent done.
AES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.720332e-03	ci left: 9.832843e-01	ci right 9.880266e-01	k: 9858	n:10000
Cons ci ratio: 4.113893e-02	ci left: 4.659699e-01	ci right 4.856442e-01	k: 4758	n:10000
KS ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
AES   10000 perm   1 sec   (6836 perm/sec)   p_kst 6.588000e-01   p_cons 4.758000e-01   p_joint 9.858000e-01

Outputting figure to mutsig2_images.part000000000004/AES.2_854_10000_0.6588_0.4758_0.9858.png
                gene_name: AES
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
AFAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
KS ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
AFAP1   10000 perm   2 sec   (5696 perm/sec)   p_kst 7.821000e-01   p_cons 5.101000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AFAP1.2_2513_10000_0.7821_0.5101_1.png
                gene_name: AFAP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
AFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.205944e-02	ci left: 9.079222e-01	ci right 9.190356e-01	k: 9136	n:10000
Cons ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
AFM   10000 perm   2 sec   (6126 perm/sec)   p_kst 5.099000e-01   p_cons 4.893000e-01   p_joint 9.136000e-01

Outputting figure to mutsig2_images.part000000000004/AFM.2_1856_10000_0.5099_0.4893_0.9136.png
                gene_name: AFM
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
AFMID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.295756e-02	ci left: 7.359324e-01	ci right 7.531249e-01	k: 7446	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
AFMID   10000 perm   1 sec   (7116 perm/sec)   p_kst 5.124000e-01   p_cons 7.446000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AFMID.2_971_10000_0.5124_0.7446_1.png
                gene_name: AFMID
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000004
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 4 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 4421673: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000005> was used as the working directory.
Started at Wed Oct 24 17:29:46 2012
Results reported at Wed Oct 24 17:57:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000005.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000005.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 5  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000005.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1866.47 sec.
    Max Memory :      5387 MB
    Max Swap   :      7706 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
5
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 5
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 5: processing genes 363 - 452
Calculating significance of each gene.
Using projection method.
363	AFP	1.827098e-01
364	AFTPH	9.850574e-01
365	AGA	7.891195e-01
366	AGAP1	9.628507e-01
367	AGAP11	1
368	AGAP2	1
369	AGAP3	9.341309e-01
370	AGAP5	1
371	AGAP6	8.624942e-01
372	AGAP7	3.375563e-01
373	AGAP8	8.927609e-01
374	AGBL1	7.642516e-01
375	AGBL2	6.401550e-01
376	AGBL4	3.527941e-01
377	AGBL5	6.451838e-01
378	AGER	1
379	AGFG1	1
380	AGFG2	1
381	AGGF1	9.470212e-01
382	AGK	6.128903e-01
383	AGL	1
384	AGMAT	1
385	AGPAT1	8.931170e-01
386	AGPAT2	1.232139e-01
387	AGPAT3	4.222103e-01
388	AGPAT4	5.957836e-01
389	AGPAT5	1
390	AGPAT6	1
391	AGPAT9	5.339867e-01
392	AGPHD1	6.087763e-01
393	AGPS	1
394	AGR2	4.231547e-01
395	AGR3	4.189806e-01
396	AGRN	1
397	AGRP	1
398	AGT	1
399	AGTPBP1	9.726806e-01
400	AGTR1	4.386700e-01
401	AGTR2	6.074459e-01
402	AGTRAP	1
403	AGXT	2.592183e-01
404	AGXT2	1.351655e-01
405	AGXT2L1	1.000621e-02
406	AGXT2L2	9.091833e-01
407	AHCTF1	9.615790e-01
408	AHCY	1
409	AHCYL1	7.191182e-01
410	AHCYL2	8.507495e-01
411	AHDC1	1.972992e-01
412	AHI1	9.980672e-01
413	AHNAK	1
414	AHNAK2	1
415	AHR	2.187279e-01
416	AHRR	1.909298e-01
417	AHSA1	1
418	AHSA2	1
419	AHSG	8.704554e-01
420	AHSP	1.329743e-01
421	AICDA	1
422	AIDA	1
423	AIF1	1
424	AIF1L	2.377771e-01
425	AIFM1	1.821083e-02
426	AIFM2	7.256806e-01
427	AIFM3	1
428	AIG1	6.410166e-01
429	AIM1	1
430	AIM1L	3.108220e-01
431	AIM2	6.545533e-01
432	AIMP1	1.633778e-01
433	AIMP2	6.044135e-01
434	AIP	9.349276e-01
435	AIPL1	5.486722e-01
436	AIRE	1
437	AJAP1	6.515453e-01
438	AK1	1
439	AK2	2.744972e-01
440	AK3	1
441	AK3L1	1
442	AK5	2.195500e-01
443	AK7	4.159069e-01
444	AKAP1	6.569532e-01
445	AKAP10	9.541181e-01
446	AKAP11	9.496019e-01
447	AKAP12	9.999764e-01
448	AKAP13	9.988403e-01
449	AKAP14	1
450	AKAP2	1
451	AKAP3	5.814161e-01
452	AKAP4	5.665528e-01
Done

Running MutSig 2:
Scatter job 5: processing genes 363 - 452
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AHNAK2
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
KS ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
AHNAK2   10000 perm   6 sec   (1558 perm/sec)   p_kst 1.058000e-01   p_cons 5.652000e-01   p_joint 2.062000e-01

Joint ci ratio: 5.910097e-02	ci left: 1.749444e-01	ci right 1.856487e-01	k: 3605	n:20000
Cons ci ratio: 2.468321e-02	ci left: 5.507838e-01	ci right 5.645994e-01	k: 11154	n:20000
KS ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
AHNAK2   20000 perm   16 sec   (1214 perm/sec)   p_kst 1.060500e-01   p_cons 5.577000e-01   p_joint 1.802500e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK2.53_17416_20000_0.10605_0.5577_0.18025.png
                gene_name: AHNAK2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
AHNAK
Processing conservation and coverage...
56% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
AHNAK   10000 perm   6 sec   (1647 perm/sec)   p_kst 1.544000e-01   p_cons 6.569000e-01   p_joint 2.461000e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK.39_17801_10000_0.1544_0.6569_0.2461.png
                gene_name: AHNAK
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 3 percent done.
AGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
Cons ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
AGBL1   10000 perm   3 sec   (3927 perm/sec)   p_kst 9.679000e-01   p_cons 7.180000e-01   p_joint 9.497000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL1.15_3293_10000_0.9679_0.718_0.9497.png
                gene_name: AGBL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 5 percent done.
AHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
AHDC1   10000 perm   3 sec   (3754 perm/sec)   p_kst 4.943000e-01   p_cons 3.387000e-01   p_joint 5.933000e-01

Outputting figure to mutsig2_images.part000000000005/AHDC1.14_4816_10000_0.4943_0.3387_0.5933.png
                gene_name: AHDC1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 6 percent done.
AGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
Cons ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
KS ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
AGL   10000 perm   2 sec   (4096 perm/sec)   p_kst 8.867000e-01   p_cons 5.715000e-01   p_joint 8.217000e-01

Outputting figure to mutsig2_images.part000000000005/AGL.13_4800_10000_0.8867_0.5715_0.8217.png
                gene_name: AGL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 8 percent done.
AKAP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
AKAP13   10000 perm   4 sec   (2801 perm/sec)   p_kst 2.800000e-02   p_cons 3.690000e-02   p_joint 4.060000e-02

Joint ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
Cons ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
KS ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
AKAP13   20000 perm   8 sec   (2625 perm/sec)   p_kst 2.925000e-02   p_cons 4.040000e-02   p_joint 2.625000e-02

Joint ci ratio: 1.857145e-01	ci left: 1.327321e-02	ci right 1.602196e-02	k: 438	n:30000
Cons ci ratio: 1.047476e-01	ci left: 4.225917e-02	ci right 4.696287e-02	k: 1337	n:30000
KS ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
AKAP13   30000 perm   12 sec   (2527 perm/sec)   p_kst 2.963333e-02   p_cons 4.456667e-02   p_joint 1.460000e-02

Joint ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
Cons ci ratio: 9.023896e-02	ci left: 4.301351e-02	ci right 4.710286e-02	k: 1801	n:40000
KS ci ratio: 1.147959e-01	ci left: 2.669672e-02	ci right 2.997223e-02	k: 1132	n:40000
AKAP13   40000 perm   16 sec   (2487 perm/sec)   p_kst 2.830000e-02   p_cons 4.502500e-02   p_joint 1.962500e-02

Joint ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
Cons ci ratio: 8.064677e-02	ci left: 4.329746e-02	ci right 4.695558e-02	k: 2255	n:50000
KS ci ratio: 1.022781e-01	ci left: 2.707842e-02	ci right 3.001665e-02	k: 1426	n:50000
AKAP13   50000 perm   20 sec   (2454 perm/sec)   p_kst 2.852000e-02   p_cons 4.510000e-02   p_joint 1.604000e-02

Joint ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
Cons ci ratio: 7.379451e-02	ci left: 4.325672e-02	ci right 4.658748e-02	k: 2694	n:60000
KS ci ratio: 9.329393e-02	ci left: 2.724824e-02	ci right 2.993095e-02	k: 1714	n:60000
AKAP13   60000 perm   25 sec   (2424 perm/sec)   p_kst 2.856667e-02   p_cons 4.490000e-02   p_joint 1.940000e-02

Joint ci ratio: 1.148435e-01	ci left: 1.543043e-02	ci right 1.732426e-02	k: 1145	n:70000
Cons ci ratio: 6.834517e-02	ci left: 4.334957e-02	ci right 4.643116e-02	k: 3141	n:70000
KS ci ratio: 8.545098e-02	ci left: 2.793717e-02	ci right 3.044492e-02	k: 2042	n:70000
AKAP13   70000 perm   29 sec   (2392 perm/sec)   p_kst 2.917143e-02   p_cons 4.487143e-02   p_joint 1.635714e-02

Joint ci ratio: 9.922016e-02	ci left: 1.818712e-02	ci right 2.009798e-02	k: 1530	n:80000
Cons ci ratio: 6.397642e-02	ci left: 4.338912e-02	ci right 4.626901e-02	k: 3585	n:80000
KS ci ratio: 7.944033e-02	ci left: 2.836286e-02	ci right 3.072143e-02	k: 2362	n:80000
AKAP13   80000 perm   34 sec   (2368 perm/sec)   p_kst 2.952500e-02   p_cons 4.481250e-02   p_joint 1.912500e-02

Outputting figure to mutsig2_images.part000000000005/AKAP13.11_8656_80000_0.029525_0.044812_0.019125.png
                gene_name: AKAP13
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 10 percent done.
AHCTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
Cons ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
KS ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
AHCTF1   10000 perm   3 sec   (3398 perm/sec)   p_kst 1.154000e-01   p_cons 4.500000e-03   p_joint 2.060000e-02

Joint ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
Cons ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
KS ci ratio: 7.746481e-02	ci left: 1.090861e-01	ci right 1.179266e-01	k: 2269	n:20000
AHCTF1   20000 perm   6 sec   (3118 perm/sec)   p_kst 1.134500e-01   p_cons 4.700000e-03   p_joint 1.765000e-02

Joint ci ratio: 1.844395e-01	ci left: 1.346407e-02	ci right 1.623106e-02	k: 444	n:30000
Cons ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
KS ci ratio: 6.320827e-02	ci left: 1.100301e-01	ci right 1.172449e-01	k: 3408	n:30000
AHCTF1   30000 perm   10 sec   (3017 perm/sec)   p_kst 1.136000e-01   p_cons 5.566667e-03   p_joint 1.480000e-02

Joint ci ratio: 1.860596e-01	ci left: 9.953278e-03	ci right 1.201864e-02	k: 438	n:40000
Cons ci ratio: 2.635553e-01	ci left: 4.775457e-03	ci right 6.247731e-03	k: 219	n:40000
KS ci ratio: 5.493348e-02	ci left: 1.098143e-01	ci right 1.160420e-01	k: 4516	n:40000
AHCTF1   40000 perm   14 sec   (2920 perm/sec)   p_kst 1.129000e-01   p_cons 5.475000e-03   p_joint 1.095000e-02

Joint ci ratio: 1.197540e-01	ci left: 1.972225e-02	ci right 2.225379e-02	k: 1048	n:50000
Cons ci ratio: 2.388072e-01	ci left: 4.720048e-03	ci right 6.018397e-03	k: 267	n:50000
KS ci ratio: 4.933749e-02	ci left: 1.093275e-01	ci right 1.148777e-01	k: 5604	n:50000
AHCTF1   50000 perm   17 sec   (2872 perm/sec)   p_kst 1.120800e-01   p_cons 5.340000e-03   p_joint 2.096000e-02

Joint ci ratio: 1.343828e-01	ci left: 1.304290e-02	ci right 1.493787e-02	k: 838	n:60000
Cons ci ratio: 2.151929e-01	ci left: 4.908141e-03	ci right 6.107120e-03	k: 329	n:60000
KS ci ratio: 4.501244e-02	ci left: 1.096851e-01	ci right 1.147525e-01	k: 6732	n:60000
AHCTF1   60000 perm   21 sec   (2820 perm/sec)   p_kst 1.122000e-01   p_cons 5.483333e-03   p_joint 1.396667e-02

Joint ci ratio: 1.293868e-01	ci left: 1.210481e-02	ci right 1.379306e-02	k: 905	n:70000
Cons ci ratio: 2.029748e-01	ci left: 4.762007e-03	ci right 5.851048e-03	k: 370	n:70000
KS ci ratio: 4.164410e-02	ci left: 1.100125e-01	ci right 1.147054e-01	k: 7864	n:70000
AHCTF1   70000 perm   25 sec   (2780 perm/sec)   p_kst 1.123429e-01   p_cons 5.285714e-03   p_joint 1.292857e-02

Joint ci ratio: 1.513770e-01	ci left: 7.682948e-03	ci right 8.953096e-03	k: 664	n:80000
Cons ci ratio: 1.916923e-01	ci left: 4.701466e-03	ci right 5.709929e-03	k: 415	n:80000
KS ci ratio: 3.891447e-02	ci left: 1.103678e-01	ci right 1.147603e-01	k: 9004	n:80000
AHCTF1   80000 perm   29 sec   (2744 perm/sec)   p_kst 1.125500e-01   p_cons 5.187500e-03   p_joint 8.300000e-03

Joint ci ratio: 9.746612e-02	ci left: 1.679433e-02	ci right 1.852585e-02	k: 1588	n:90000
Cons ci ratio: 1.819052e-01	ci left: 4.666295e-03	ci right 5.610478e-03	k: 461	n:90000
KS ci ratio: 3.666981e-02	ci left: 1.105969e-01	ci right 1.147392e-01	k: 10139	n:90000
AHCTF1   90000 perm   33 sec   (2712 perm/sec)   p_kst 1.126556e-01   p_cons 5.122222e-03   p_joint 1.764444e-02

Joint ci ratio: 1.035435e-01	ci left: 1.339785e-02	ci right 1.487053e-02	k: 1412	n:100000
Cons ci ratio: 1.750441e-01	ci left: 4.553116e-03	ci right 5.435972e-03	k: 498	n:100000
KS ci ratio: 3.458885e-02	ci left: 1.118479e-01	ci right 1.157946e-01	k: 11381	n:100000
AHCTF1   100000 perm   37 sec   (2679 perm/sec)   p_kst 1.138100e-01   p_cons 4.980000e-03   p_joint 1.412000e-02

Joint ci ratio: 9.041784e-02	ci left: 1.603983e-02	ci right 1.756762e-02	k: 1847	n:110000
Cons ci ratio: 1.671891e-01	ci left: 4.556878e-03	ci right 5.396821e-03	k: 546	n:110000
KS ci ratio: 3.293349e-02	ci left: 1.122178e-01	ci right 1.159844e-01	k: 12550	n:110000
AHCTF1   110000 perm   42 sec   (2647 perm/sec)   p_kst 1.140909e-01   p_cons 4.963636e-03   p_joint 1.679091e-02

Joint ci ratio: 9.291207e-02	ci left: 1.393708e-02	ci right 1.530319e-02	k: 1753	n:120000
Cons ci ratio: 1.605762e-01	ci left: 4.544751e-03	ci right 5.346127e-03	k: 592	n:120000
KS ci ratio: 3.153403e-02	ci left: 1.122815e-01	ci right 1.158872e-01	k: 13689	n:120000
AHCTF1   120000 perm   46 sec   (2617 perm/sec)   p_kst 1.140750e-01   p_cons 4.933333e-03   p_joint 1.460833e-02

Joint ci ratio: 9.046221e-02	ci left: 1.359394e-02	ci right 1.488940e-02	k: 1850	n:130000
Cons ci ratio: 1.556730e-01	ci left: 4.475885e-03	ci right 5.238767e-03	k: 630	n:130000
KS ci ratio: 3.031750e-02	ci left: 1.122160e-01	ci right 1.156781e-01	k: 14812	n:130000
AHCTF1   130000 perm   50 sec   (2589 perm/sec)   p_kst 1.139385e-01   p_cons 4.846154e-03   p_joint 1.423077e-02

Joint ci ratio: 1.133430e-01	ci left: 7.991035e-03	ci right 8.958059e-03	k: 1185	n:140000
Cons ci ratio: 1.553296e-01	ci left: 4.176723e-03	ci right 4.886896e-03	k: 633	n:140000
KS ci ratio: 2.918626e-02	ci left: 1.124745e-01	ci right 1.158129e-01	k: 15979	n:140000
AHCTF1   140000 perm   55 sec   (2560 perm/sec)   p_kst 1.141357e-01   p_cons 4.521429e-03   p_joint 8.464286e-03

Joint ci ratio: 9.527302e-02	ci left: 1.062801e-02	ci right 1.169768e-02	k: 1673	n:150000
Cons ci ratio: 1.493232e-01	ci left: 4.231740e-03	ci right 4.920959e-03	k: 685	n:150000
KS ci ratio: 2.819608e-02	ci left: 1.125350e-01	ci right 1.157600e-01	k: 17121	n:150000
AHCTF1   150000 perm   59 sec   (2533 perm/sec)   p_kst 1.141400e-01   p_cons 4.566667e-03   p_joint 1.115333e-02

Joint ci ratio: 9.348930e-02	ci left: 1.036035e-02	ci right 1.138249e-02	k: 1738	n:160000
Cons ci ratio: 1.449535e-01	ci left: 4.220091e-03	ci right 4.885558e-03	k: 727	n:160000
KS ci ratio: 2.736630e-02	ci left: 1.121049e-01	ci right 1.152216e-01	k: 18185	n:160000
AHCTF1   160000 perm   64 sec   (2507 perm/sec)   p_kst 1.136563e-01   p_cons 4.543750e-03   p_joint 1.086250e-02

Joint ci ratio: 9.121562e-02	ci left: 1.025658e-02	ci right 1.124256e-02	k: 1826	n:170000
Cons ci ratio: 1.412229e-01	ci left: 4.193045e-03	ci right 4.835797e-03	k: 766	n:170000
KS ci ratio: 2.654117e-02	ci left: 1.122122e-01	ci right 1.152363e-01	k: 19332	n:170000
AHCTF1   170000 perm   69 sec   (2480 perm/sec)   p_kst 1.137176e-01   p_cons 4.505882e-03   p_joint 1.074118e-02

Joint ci ratio: 9.232124e-02	ci left: 9.458614e-03	ci right 1.037950e-02	k: 1784	n:180000
Cons ci ratio: 1.365798e-01	ci left: 4.244319e-03	ci right 4.871802e-03	k: 819	n:180000
KS ci ratio: 2.581063e-02	ci left: 1.121209e-01	ci right 1.150582e-01	k: 20445	n:180000
AHCTF1   180000 perm   73 sec   (2455 perm/sec)   p_kst 1.135833e-01   p_cons 4.550000e-03   p_joint 9.911111e-03

Joint ci ratio: 9.378838e-02	ci left: 8.683032e-03	ci right 9.542571e-03	k: 1730	n:190000
Cons ci ratio: 1.329028e-01	ci left: 4.254880e-03	ci right 4.865651e-03	k: 865	n:190000
KS ci ratio: 2.509068e-02	ci left: 1.124120e-01	ci right 1.152735e-01	k: 21629	n:190000
AHCTF1   190000 perm   78 sec   (2429 perm/sec)   p_kst 1.138368e-01   p_cons 4.552632e-03   p_joint 9.105263e-03

Joint ci ratio: 9.634036e-02	ci left: 7.814289e-03	ci right 8.610064e-03	k: 1641	n:200000
Cons ci ratio: 1.285203e-01	ci left: 4.332339e-03	ci right 4.932158e-03	k: 925	n:200000
KS ci ratio: 2.445806e-02	ci left: 1.124262e-01	ci right 1.152150e-01	k: 22763	n:200000
AHCTF1   200000 perm   83 sec   (2403 perm/sec)   p_kst 1.138150e-01   p_cons 4.625000e-03   p_joint 8.205000e-03

Joint ci ratio: 9.571520e-02	ci left: 7.544376e-03	ci right 8.307396e-03	k: 1663	n:210000
Cons ci ratio: 1.253777e-01	ci left: 4.342741e-03	ci right 4.928205e-03	k: 972	n:210000
KS ci ratio: 2.388565e-02	ci left: 1.123168e-01	ci right 1.150367e-01	k: 23871	n:210000
AHCTF1   210000 perm   88 sec   (2378 perm/sec)   p_kst 1.136714e-01   p_cons 4.628571e-03   p_joint 7.919048e-03

Joint ci ratio: 7.770198e-02	ci left: 1.099177e-02	ci right 1.188481e-02	k: 2515	n:220000
Cons ci ratio: 1.228791e-01	ci left: 4.321513e-03	ci right 4.891660e-03	k: 1012	n:220000
KS ci ratio: 2.332111e-02	ci left: 1.124803e-01	ci right 1.151389e-01	k: 25037	n:220000
AHCTF1   220000 perm   93 sec   (2354 perm/sec)   p_kst 1.138045e-01   p_cons 4.600000e-03   p_joint 1.143182e-02

Joint ci ratio: 8.396743e-02	ci left: 8.992625e-03	ci right 9.785031e-03	k: 2158	n:230000
Cons ci ratio: 1.202378e-01	ci left: 4.323324e-03	ci right 4.880578e-03	k: 1057	n:230000
KS ci ratio: 2.281739e-02	ci left: 1.124313e-01	ci right 1.150306e-01	k: 26157	n:230000
AHCTF1   230000 perm   99 sec   (2330 perm/sec)   p_kst 1.137261e-01   p_cons 4.595652e-03   p_joint 9.382609e-03

Joint ci ratio: 8.313339e-02	ci left: 8.797398e-03	ci right 9.564526e-03	k: 2202	n:240000
Cons ci ratio: 1.176527e-01	ci left: 4.333194e-03	ci right 4.878876e-03	k: 1104	n:240000
KS ci ratio: 2.236023e-02	ci left: 1.122501e-01	ci right 1.147926e-01	k: 27244	n:240000
AHCTF1   240000 perm   104 sec   (2306 perm/sec)   p_kst 1.135167e-01   p_cons 4.600000e-03   p_joint 9.175000e-03

Joint ci ratio: 8.171999e-02	ci left: 8.747143e-03	ci right 9.496303e-03	k: 2279	n:250000
Cons ci ratio: 1.151271e-01	ci left: 4.350162e-03	ci right 4.885422e-03	k: 1153	n:250000
KS ci ratio: 2.191334e-02	ci left: 1.122312e-01	ci right 1.147218e-01	k: 28368	n:250000
AHCTF1   250000 perm   110 sec   (2282 perm/sec)   p_kst 1.134720e-01   p_cons 4.612000e-03   p_joint 9.116000e-03

Joint ci ratio: 8.470846e-02	ci left: 7.823038e-03	ci right 8.518762e-03	k: 2123	n:260000
Cons ci ratio: 1.138561e-01	ci left: 4.279976e-03	ci right 4.800395e-03	k: 1179	n:260000
KS ci ratio: 2.150086e-02	ci left: 1.121338e-01	ci right 1.145748e-01	k: 29471	n:260000
AHCTF1   260000 perm   115 sec   (2260 perm/sec)   p_kst 1.133500e-01   p_cons 4.534615e-03   p_joint 8.165385e-03

Joint ci ratio: 8.422322e-02	ci left: 7.623899e-03	ci right 8.297838e-03	k: 2148	n:270000
Cons ci ratio: 1.116082e-01	ci left: 4.294225e-03	ci right 4.805389e-03	k: 1227	n:270000
KS ci ratio: 2.109759e-02	ci left: 1.121694e-01	ci right 1.145648e-01	k: 30608	n:270000
AHCTF1   270000 perm   121 sec   (2238 perm/sec)   p_kst 1.133630e-01   p_cons 4.544444e-03   p_joint 7.955556e-03

Joint ci ratio: 8.397969e-02	ci left: 7.397033e-03	ci right 8.048933e-03	k: 2161	n:280000
Cons ci ratio: 1.098784e-01	ci left: 4.276285e-03	ci right 4.776913e-03	k: 1266	n:280000
KS ci ratio: 2.073942e-02	ci left: 1.119789e-01	ci right 1.143291e-01	k: 31682	n:280000
AHCTF1   280000 perm   126 sec   (2216 perm/sec)   p_kst 1.131500e-01   p_cons 4.521429e-03   p_joint 7.717857e-03

Joint ci ratio: 8.362155e-02	ci left: 7.206077e-03	ci right 7.838307e-03	k: 2180	n:290000
Cons ci ratio: 1.080604e-01	ci left: 4.273061e-03	ci right 4.764508e-03	k: 1309	n:290000
KS ci ratio: 2.037224e-02	ci left: 1.120627e-01	ci right 1.143726e-01	k: 32832	n:290000
AHCTF1   290000 perm   132 sec   (2195 perm/sec)   p_kst 1.132138e-01   p_cons 4.513793e-03   p_joint 7.517241e-03

Joint ci ratio: 7.737336e-02	ci left: 8.154966e-03	ci right 8.814582e-03	k: 2544	n:300000
Cons ci ratio: 1.100259e-01	ci left: 3.981441e-03	ci right 4.448217e-03	k: 1263	n:300000
KS ci ratio: 2.002689e-02	ci left: 1.121115e-01	ci right 1.143827e-01	k: 33973	n:300000
AHCTF1   300000 perm   138 sec   (2173 perm/sec)   p_kst 1.132433e-01   p_cons 4.210000e-03   p_joint 8.480000e-03

Joint ci ratio: 6.459966e-02	ci left: 1.135934e-02	ci right 1.212080e-02	k: 3638	n:310000
Cons ci ratio: 9.906211e-02	ci left: 4.776754e-03	ci right 5.277729e-03	k: 1557	n:310000
KS ci ratio: 1.970455e-02	ci left: 1.120963e-01	ci right 1.143303e-01	k: 35095	n:310000
AHCTF1   310000 perm   144 sec   (2153 perm/sec)   p_kst 1.132097e-01   p_cons 5.022581e-03   p_joint 1.173548e-02

Outputting figure to mutsig2_images.part000000000005/AHCTF1.10_6972_310000_0.11321_0.0050226_0.011735.png
                gene_name: AHCTF1
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0048 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 11 percent done.
AK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
Cons ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
KS ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
AK5   10000 perm   2 sec   (5130 perm/sec)   p_kst 7.989000e-01   p_cons 2.503000e-01   p_joint 7.125000e-01

Outputting figure to mutsig2_images.part000000000005/AK5.10_1745_10000_0.7989_0.2503_0.7125.png
                gene_name: AK5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 13 percent done.
AGXT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
Cons ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
KS ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
AGXT2L1   10000 perm   2 sec   (5088 perm/sec)   p_kst 3.411000e-01   p_cons 2.169000e-01   p_joint 3.596000e-01

Outputting figure to mutsig2_images.part000000000005/AGXT2L1.9_1557_10000_0.3411_0.2169_0.3596.png
                gene_name: AGXT2L1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 15 percent done.
AIFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
Cons ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
KS ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
AIFM1   10000 perm   2 sec   (4990 perm/sec)   p_kst 2.366000e-01   p_cons 9.000000e-03   p_joint 5.010000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 2.750958e-01	ci left: 8.667639e-03	ci right 1.147755e-02	k: 200	n:20000
KS ci ratio: 4.984445e-02	ci left: 2.302775e-01	ci right 2.420993e-01	k: 4723	n:20000
AIFM1   20000 perm   5 sec   (4417 perm/sec)   p_kst 2.361500e-01   p_cons 1.000000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
Cons ci ratio: 2.251832e-01	ci left: 8.873598e-03	ci right 1.115613e-02	k: 299	n:30000
KS ci ratio: 4.117743e-02	ci left: 2.271998e-01	ci right 2.367854e-01	k: 6959	n:30000
AIFM1   30000 perm   7 sec   (4236 perm/sec)   p_kst 2.319667e-01   p_cons 9.966667e-03   p_joint 3.430000e-02

Joint ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
Cons ci ratio: 1.945245e-01	ci left: 9.071922e-03	ci right 1.105018e-02	k: 401	n:40000
KS ci ratio: 3.570835e-02	ci left: 2.273736e-01	ci right 2.356654e-01	k: 9260	n:40000
AIFM1   40000 perm   10 sec   (4101 perm/sec)   p_kst 2.315000e-01   p_cons 1.002500e-02   p_joint 3.490000e-02

Joint ci ratio: 9.273926e-02	ci left: 3.289778e-02	ci right 3.611656e-02	k: 1724	n:50000
Cons ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
KS ci ratio: 3.187630e-02	ci left: 2.285046e-01	ci right 2.359265e-01	k: 11610	n:50000
AIFM1   50000 perm   12 sec   (4003 perm/sec)   p_kst 2.322000e-01   p_cons 1.020000e-02   p_joint 3.448000e-02

Joint ci ratio: 7.954568e-02	ci left: 3.735051e-02	ci right 4.046096e-02	k: 2333	n:60000
Cons ci ratio: 1.563596e-01	ci left: 9.555608e-03	ci right 1.119227e-02	k: 621	n:60000
KS ci ratio: 2.810449e-02	ci left: 2.413968e-01	ci right 2.482945e-01	k: 14690	n:60000
AIFM1   60000 perm   15 sec   (3906 perm/sec)   p_kst 2.448333e-01   p_cons 1.035000e-02   p_joint 3.888333e-02

Joint ci ratio: 6.628403e-02	ci left: 4.600622e-02	ci right 4.917427e-02	k: 3330	n:70000
Cons ci ratio: 1.441268e-01	ci left: 9.703001e-03	ci right 1.122370e-02	k: 731	n:70000
KS ci ratio: 2.602625e-02	ci left: 2.415614e-01	ci right 2.479455e-01	k: 17132	n:70000
AIFM1   70000 perm   18 sec   (3821 perm/sec)   p_kst 2.447429e-01   p_cons 1.044286e-02   p_joint 4.757143e-02

Joint ci ratio: 6.828594e-02	ci left: 3.820991e-02	ci right 4.092361e-02	k: 3164	n:80000
Cons ci ratio: 1.358537e-01	ci left: 9.599835e-03	ci right 1.101102e-02	k: 823	n:80000
KS ci ratio: 2.425478e-02	ci left: 2.431431e-01	ci right 2.491253e-01	k: 19690	n:80000
AIFM1   80000 perm   21 sec   (3747 perm/sec)   p_kst 2.461250e-01   p_cons 1.028750e-02   p_joint 3.955000e-02

Joint ci ratio: 7.083118e-02	ci left: 3.174416e-02	ci right 3.408607e-02	k: 2961	n:90000
Cons ci ratio: 1.289301e-01	ci left: 9.510794e-03	ci right 1.083218e-02	k: 914	n:90000
KS ci ratio: 2.289393e-02	ci left: 2.428901e-01	ci right 2.485263e-01	k: 22113	n:90000
AIFM1   90000 perm   25 sec   (3672 perm/sec)   p_kst 2.457000e-01   p_cons 1.015556e-02   p_joint 3.290000e-02

Joint ci ratio: 6.584419e-02	ci left: 3.310178e-02	ci right 3.536534e-02	k: 3422	n:100000
Cons ci ratio: 1.214519e-01	ci left: 9.683460e-03	ci right 1.094519e-02	k: 1030	n:100000
KS ci ratio: 2.168348e-02	ci left: 2.436419e-01	ci right 2.489928e-01	k: 24631	n:100000
AIFM1   100000 perm   28 sec   (3606 perm/sec)   p_kst 2.463100e-01   p_cons 1.030000e-02   p_joint 3.422000e-02

Joint ci ratio: 6.163900e-02	ci left: 3.436944e-02	ci right 3.656423e-02	k: 3900	n:110000
Cons ci ratio: 1.161158e-01	ci left: 9.658761e-03	ci right 1.085818e-02	k: 1127	n:110000
KS ci ratio: 2.069476e-02	ci left: 2.434027e-01	ci right 2.485016e-01	k: 27054	n:110000
AIFM1   110000 perm   31 sec   (3540 perm/sec)   p_kst 2.459455e-01   p_cons 1.024545e-02   p_joint 3.545455e-02

Joint ci ratio: 5.870547e-02	ci left: 3.477230e-02	ci right 3.688354e-02	k: 4298	n:120000
Cons ci ratio: 1.112431e-01	ci left: 9.671607e-03	ci right 1.081891e-02	k: 1228	n:120000
KS ci ratio: 2.016700e-02	ci left: 2.370376e-01	ci right 2.418750e-01	k: 28734	n:120000
AIFM1   120000 perm   34 sec   (3482 perm/sec)   p_kst 2.394500e-01   p_cons 1.023333e-02   p_joint 3.581667e-02

Joint ci ratio: 5.823818e-02	ci left: 3.269528e-02	ci right 3.466406e-02	k: 4377	n:130000
Cons ci ratio: 1.076336e-01	ci left: 9.556074e-03	ci right 1.065056e-02	k: 1312	n:130000
KS ci ratio: 1.940229e-02	ci left: 2.366377e-01	ci right 2.412816e-01	k: 31064	n:130000
AIFM1   130000 perm   38 sec   (3421 perm/sec)   p_kst 2.389538e-01   p_cons 1.009231e-02   p_joint 3.366923e-02

Joint ci ratio: 5.984480e-02	ci left: 2.884510e-02	ci right 3.063159e-02	k: 4162	n:140000
Cons ci ratio: 1.040160e-01	ci left: 9.520193e-03	ci right 1.057168e-02	k: 1405	n:140000
KS ci ratio: 1.867474e-02	ci left: 2.371452e-01	ci right 2.416227e-01	k: 33513	n:140000
AIFM1   140000 perm   42 sec   (3371 perm/sec)   p_kst 2.393786e-01   p_cons 1.003571e-02   p_joint 2.972857e-02

Joint ci ratio: 5.763840e-02	ci left: 2.905046e-02	ci right 3.078111e-02	k: 4486	n:150000
Cons ci ratio: 1.008082e-01	ci left: 9.476630e-03	ci right 1.048911e-02	k: 1496	n:150000
KS ci ratio: 1.806462e-02	ci left: 2.367571e-01	ci right 2.410796e-01	k: 35837	n:150000
AIFM1   150000 perm   45 sec   (3319 perm/sec)   p_kst 2.389133e-01   p_cons 9.973333e-03   p_joint 2.990667e-02

Joint ci ratio: 5.654389e-02	ci left: 2.833728e-02	ci right 2.999234e-02	k: 4665	n:160000
Cons ci ratio: 9.747771e-02	ci left: 9.518235e-03	ci right 1.049964e-02	k: 1600	n:160000
KS ci ratio: 1.747934e-02	ci left: 2.370677e-01	ci right 2.412542e-01	k: 38265	n:160000
AIFM1   160000 perm   49 sec   (3263 perm/sec)   p_kst 2.391562e-01   p_cons 1.000000e-02   p_joint 2.915625e-02

Outputting figure to mutsig2_images.part000000000005/AIFM1.9_2053_160000_0.23916_0.01_0.029156.png
                gene_name: AIFM1
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 16 percent done.
AIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
AIM1   10000 perm   3 sec   (3861 perm/sec)   p_kst 4.100000e-02   p_cons 8.505000e-01   p_joint 1.647000e-01

Joint ci ratio: 6.581469e-02	ci left: 1.456692e-01	ci right 1.556326e-01	k: 3012	n:20000
Cons ci ratio: 1.161517e-02	ci left: 8.456342e-01	ci right 8.555636e-01	k: 17013	n:20000
KS ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
AIM1   20000 perm   6 sec   (3472 perm/sec)   p_kst 3.990000e-02   p_cons 8.506500e-01   p_joint 1.506000e-01

Joint ci ratio: 6.913119e-02	ci left: 9.344374e-02	ci right 1.001679e-01	k: 2903	n:30000
Cons ci ratio: 9.932867e-03	ci left: 8.342865e-01	ci right 8.426479e-01	k: 25155	n:30000
KS ci ratio: 1.104419e-01	ci left: 3.807010e-02	ci right 4.255281e-02	k: 1208	n:30000
AIM1   30000 perm   9 sec   (3342 perm/sec)   p_kst 4.026667e-02   p_cons 8.385000e-01   p_joint 9.676667e-02

Joint ci ratio: 6.133614e-02	ci left: 8.980111e-02	ci right 9.550818e-02	k: 3705	n:40000
Cons ci ratio: 8.582188e-03	ci left: 8.354873e-01	ci right 8.427134e-01	k: 33565	n:40000
KS ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
AIM1   40000 perm   12 sec   (3264 perm/sec)   p_kst 4.062500e-02   p_cons 8.391250e-01   p_joint 9.262500e-02

Outputting figure to mutsig2_images.part000000000005/AIM1.9_5252_40000_0.040625_0.83913_0.092625.png
                gene_name: AIM1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 18 percent done.
AGXT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
Cons ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
KS ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
AGXT2   10000 perm   2 sec   (5525 perm/sec)   p_kst 6.915000e-01   p_cons 3.670000e-02   p_joint 1.200000e-01

Joint ci ratio: 6.338064e-02	ci left: 1.554374e-01	ci right 1.656615e-01	k: 3210	n:20000
Cons ci ratio: 1.445823e-01	ci left: 3.288174e-02	ci right 3.805446e-02	k: 708	n:20000
KS ci ratio: 1.858082e-02	ci left: 6.834877e-01	ci right 6.963570e-01	k: 13799	n:20000
AGXT2   20000 perm   4 sec   (4785 perm/sec)   p_kst 6.899500e-01   p_cons 3.540000e-02   p_joint 1.605000e-01

Joint ci ratio: 6.301033e-02	ci left: 1.106546e-01	ci right 1.178869e-01	k: 3427	n:30000
Cons ci ratio: 1.188948e-01	ci left: 3.288409e-02	ci right 3.707326e-02	k: 1048	n:30000
KS ci ratio: 1.431778e-02	ci left: 7.090168e-01	ci right 7.192750e-01	k: 21425	n:30000
AGXT2   30000 perm   7 sec   (4549 perm/sec)   p_kst 7.141667e-01   p_cons 3.493333e-02   p_joint 1.142333e-01

Joint ci ratio: 5.093482e-02	ci left: 1.256802e-01	ci right 1.322738e-01	k: 5158	n:40000
Cons ci ratio: 1.005930e-01	ci left: 3.473223e-02	ci right 3.843544e-02	k: 1462	n:40000
KS ci ratio: 1.237430e-02	ci left: 7.105482e-01	ci right 7.194205e-01	k: 28600	n:40000
AGXT2   40000 perm   9 sec   (4377 perm/sec)   p_kst 7.150000e-01   p_cons 3.655000e-02   p_joint 1.289500e-01

Joint ci ratio: 4.383604e-02	ci left: 1.348492e-01	ci right 1.409129e-01	k: 6893	n:50000
Cons ci ratio: 8.946049e-02	ci left: 3.532325e-02	ci right 3.865078e-02	k: 1848	n:50000
KS ci ratio: 1.105436e-02	ci left: 7.115229e-01	ci right 7.194521e-01	k: 35775	n:50000
AGXT2   50000 perm   12 sec   (4262 perm/sec)   p_kst 7.155000e-01   p_cons 3.696000e-02   p_joint 1.378600e-01

Outputting figure to mutsig2_images.part000000000005/AGXT2.8_1601_50000_0.7155_0.03696_0.13786.png
                gene_name: AGXT2
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 19 percent done.
AHI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
AHI1   10000 perm   2 sec   (4220 perm/sec)   p_kst 4.896000e-01   p_cons 5.905000e-01   p_joint 6.476000e-01

Outputting figure to mutsig2_images.part000000000005/AHI1.8_3752_10000_0.4896_0.5905_0.6476.png
                gene_name: AHI1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 21 percent done.
AHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
AHR   10000 perm   2 sec   (5112 perm/sec)   p_kst 3.810000e-02   p_cons 5.357000e-01   p_joint 1.269000e-01

Joint ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
Cons ci ratio: 2.551966e-02	ci left: 5.342635e-01	ci right 5.481245e-01	k: 10824	n:20000
KS ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
AHR   20000 perm   4 sec   (4496 perm/sec)   p_kst 3.615000e-02   p_cons 5.412000e-01   p_joint 8.145000e-02

Joint ci ratio: 8.578873e-02	ci left: 6.226857e-02	ci right 6.788268e-02	k: 1951	n:30000
Cons ci ratio: 2.091141e-02	ci left: 5.337728e-01	ci right 5.450863e-01	k: 16183	n:30000
KS ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
AHR   30000 perm   7 sec   (4286 perm/sec)   p_kst 3.453333e-02   p_cons 5.394333e-01   p_joint 6.503333e-02

Joint ci ratio: 7.334552e-02	ci left: 6.420023e-02	ci right 6.911291e-02	k: 2665	n:40000
Cons ci ratio: 1.801033e-02	ci left: 5.372771e-01	ci right 5.470667e-01	k: 21687	n:40000
KS ci ratio: 1.041553e-01	ci left: 3.241597e-02	ci right 3.600207e-02	k: 1367	n:40000
AHR   40000 perm   10 sec   (4157 perm/sec)   p_kst 3.417500e-02   p_cons 5.421750e-01   p_joint 6.662500e-02

Joint ci ratio: 7.008674e-02	ci left: 5.681265e-02	ci right 6.095875e-02	k: 2943	n:50000
Cons ci ratio: 1.606609e-02	ci left: 5.391216e-01	ci right 5.478734e-01	k: 27175	n:50000
KS ci ratio: 9.273926e-02	ci left: 3.289778e-02	ci right 3.611656e-02	k: 1724	n:50000
AHR   50000 perm   12 sec   (4042 perm/sec)   p_kst 3.448000e-02   p_cons 5.435000e-01   p_joint 5.886000e-02

Outputting figure to mutsig2_images.part000000000005/AHR.8_2591_50000_0.03448_0.5435_0.05886.png
                gene_name: AHR
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 23 percent done.
AKAP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524926e-02	ci left: 8.618211e-01	ci right 8.751635e-01	k: 8686	n:10000
Cons ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
KS ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
AKAP11   10000 perm   3 sec   (3638 perm/sec)   p_kst 7.201000e-01   p_cons 8.692000e-01   p_joint 8.686000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP11.8_5750_10000_0.7201_0.8692_0.8686.png
                gene_name: AKAP11
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 24 percent done.
AGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
Cons ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
KS ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
AGAP1   10000 perm   2 sec   (4629 perm/sec)   p_kst 3.136000e-01   p_cons 1.420000e-01   p_joint 1.974000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP1.7_2646_10000_0.3136_0.142_0.1974.png
                gene_name: AGAP1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
AHRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
KS ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
AHRR   10000 perm   2 sec   (5025 perm/sec)   p_kst 8.496000e-01   p_cons 5.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AHRR.7_2208_10000_0.8496_0.5463_1.png
                gene_name: AHRR
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
AK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
KS ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
AK7   10000 perm   2 sec   (5280 perm/sec)   p_kst 2.865000e-01   p_cons 9.359000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000005/AK7.7_2244_10000_0.2865_0.9359_0.411.png
                gene_name: AK7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 29 percent done.
AKAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
AKAP3   10000 perm   2 sec   (4609 perm/sec)   p_kst 6.451000e-01   p_cons 6.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AKAP3.7_2574_10000_0.6451_0.6832_1.png
                gene_name: AKAP3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
AKAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
KS ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
AKAP4   10000 perm   2 sec   (5221 perm/sec)   p_kst 5.612000e-01   p_cons 5.943000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AKAP4.7_2589_10000_0.5612_0.5943_1.png
                gene_name: AKAP4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
AFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
AFP   10000 perm   2 sec   (5202 perm/sec)   p_kst 3.901000e-01   p_cons 6.010000e-02   p_joint 1.516000e-01

Joint ci ratio: 5.805281e-02	ci left: 1.802328e-01	ci right 1.910587e-01	k: 3712	n:20000
Cons ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
KS ci ratio: 3.467717e-02	ci left: 3.830323e-01	ci right 3.965997e-01	k: 7796	n:20000
AFP   20000 perm   4 sec   (4631 perm/sec)   p_kst 3.898000e-01   p_cons 5.790000e-02   p_joint 1.856000e-01

Joint ci ratio: 5.955204e-02	ci left: 1.224290e-01	ci right 1.299768e-01	k: 3785	n:30000
Cons ci ratio: 8.684030e-02	ci left: 6.083153e-02	ci right 6.638669e-02	k: 1907	n:30000
KS ci ratio: 2.766108e-02	ci left: 3.954140e-01	ci right 4.065385e-01	k: 12029	n:30000
AFP   30000 perm   7 sec   (4432 perm/sec)   p_kst 4.009667e-01   p_cons 6.356667e-02   p_joint 1.261667e-01

Outputting figure to mutsig2_images.part000000000005/AFP.6_1886_30000_0.40097_0.063567_0.12617.png
                gene_name: AFP
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 34 percent done.
AGAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
KS ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
AGAP6   10000 perm   2 sec   (5497 perm/sec)   p_kst 2.900000e-02   p_cons 5.150000e-02   p_joint 1.030000e-02

Joint ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
Cons ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
AGAP6   20000 perm   4 sec   (4837 perm/sec)   p_kst 3.125000e-02   p_cons 5.580000e-02   p_joint 1.545000e-02

Joint ci ratio: 1.552825e-01	ci left: 1.918287e-02	ci right 2.244419e-02	k: 623	n:30000
Cons ci ratio: 9.779484e-02	ci left: 4.834209e-02	ci right 5.334535e-02	k: 1524	n:30000
KS ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
AGAP6   30000 perm   6 sec   (4617 perm/sec)   p_kst 3.103333e-02   p_cons 5.080000e-02   p_joint 2.076667e-02

Joint ci ratio: 1.131618e-01	ci left: 2.747453e-02	ci right 3.079429e-02	k: 1164	n:40000
Cons ci ratio: 8.161659e-02	ci left: 5.229533e-02	ci right 5.676962e-02	k: 2180	n:40000
KS ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
AGAP6   40000 perm   9 sec   (4464 perm/sec)   p_kst 3.150000e-02   p_cons 5.450000e-02   p_joint 2.910000e-02

Joint ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
Cons ci ratio: 7.273609e-02	ci left: 5.289964e-02	ci right 5.691223e-02	k: 2744	n:50000
KS ci ratio: 9.644949e-02	ci left: 3.043547e-02	ci right 3.353918e-02	k: 1598	n:50000
AGAP6   50000 perm   12 sec   (4344 perm/sec)   p_kst 3.196000e-02   p_cons 5.488000e-02   p_joint 2.490000e-02

Joint ci ratio: 9.990584e-02	ci left: 2.376545e-02	ci right 2.628078e-02	k: 1500	n:60000
Cons ci ratio: 6.639876e-02	ci left: 5.307420e-02	ci right 5.673567e-02	k: 3293	n:60000
KS ci ratio: 8.859127e-02	ci left: 3.019832e-02	ci right 3.301389e-02	k: 1895	n:60000
AGAP6   60000 perm   14 sec   (4237 perm/sec)   p_kst 3.158333e-02   p_cons 5.488333e-02   p_joint 2.500000e-02

Outputting figure to mutsig2_images.part000000000005/AGAP6.6_2093_60000_0.031583_0.054883_0.025.png
                gene_name: AGAP6
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 35 percent done.
AGBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
Cons ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
KS ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
AGBL2   10000 perm   2 sec   (4750 perm/sec)   p_kst 7.993000e-01   p_cons 3.008000e-01   p_joint 6.184000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL2.6_2781_10000_0.7993_0.3008_0.6184.png
                gene_name: AGBL2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 37 percent done.
AFTPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
AFTPH   10000 perm   2 sec   (4772 perm/sec)   p_kst 5.635000e-01   p_cons 3.703000e-01   p_joint 5.370000e-01

Outputting figure to mutsig2_images.part000000000005/AFTPH.5_2850_10000_0.5635_0.3703_0.537.png
                gene_name: AFTPH
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 39 percent done.
AGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
KS ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
AGAP2   10000 perm   2 sec   (4698 perm/sec)   p_kst 1.354000e-01   p_cons 3.010000e-02   p_joint 4.920000e-02

Joint ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
Cons ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
KS ci ratio: 7.080039e-02	ci left: 1.281747e-01	ci right 1.376323e-01	k: 2657	n:20000
AGAP2   20000 perm   5 sec   (4160 perm/sec)   p_kst 1.328500e-01   p_cons 3.005000e-02   p_joint 5.185000e-02

Joint ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
Cons ci ratio: 1.384286e-01	ci left: 2.422860e-02	ci right 2.786398e-02	k: 780	n:30000
KS ci ratio: 5.732865e-02	ci left: 1.309544e-01	ci right 1.387165e-01	k: 4044	n:30000
AGAP2   30000 perm   8 sec   (3966 perm/sec)   p_kst 1.348000e-01   p_cons 2.600000e-02   p_joint 3.490000e-02

Joint ci ratio: 9.726032e-02	ci left: 3.712383e-02	ci right 4.094346e-02	k: 1560	n:40000
Cons ci ratio: 1.183934e-01	ci left: 2.509359e-02	ci right 2.827562e-02	k: 1066	n:40000
KS ci ratio: 4.929140e-02	ci left: 1.331495e-01	ci right 1.399034e-01	k: 5460	n:40000
AGAP2   40000 perm   10 sec   (3846 perm/sec)   p_kst 1.365000e-01   p_cons 2.665000e-02   p_joint 3.900000e-02

Joint ci ratio: 7.718092e-02	ci left: 4.716336e-02	ci right 5.096921e-02	k: 2452	n:50000
Cons ci ratio: 1.040555e-01	ci left: 2.616203e-02	ci right 2.905316e-02	k: 1379	n:50000
KS ci ratio: 4.313459e-02	ci left: 1.386937e-01	ci right 1.448280e-01	k: 7087	n:50000
AGAP2   50000 perm   13 sec   (3740 perm/sec)   p_kst 1.417400e-01   p_cons 2.758000e-02   p_joint 4.904000e-02

Joint ci ratio: 7.107551e-02	ci left: 4.653249e-02	ci right 4.997804e-02	k: 2894	n:60000
Cons ci ratio: 9.490100e-02	ci left: 2.633628e-02	ci right 2.897634e-02	k: 1658	n:60000
KS ci ratio: 3.948080e-02	ci left: 1.383235e-01	ci right 1.439112e-01	k: 8466	n:60000
AGAP2   60000 perm   16 sec   (3659 perm/sec)   p_kst 1.411000e-01   p_cons 2.763333e-02   p_joint 4.823333e-02

Outputting figure to mutsig2_images.part000000000005/AGAP2.5_3819_60000_0.1411_0.027633_0.048233.png
                gene_name: AGAP2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 40 percent done.
AGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
KS ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
AGAP3   10000 perm   2 sec   (5038 perm/sec)   p_kst 1.665000e-01   p_cons 2.442000e-01   p_joint 3.061000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP3.5_2875_10000_0.1665_0.2442_0.3061.png
                gene_name: AGAP3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 42 percent done.
AGRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
KS ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
AGRN   10000 perm   2 sec   (4014 perm/sec)   p_kst 3.519000e-01   p_cons 5.293000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000005/AGRN.5_6282_10000_0.3519_0.5293_0.5298.png
                gene_name: AGRN
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 44 percent done.
AGTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
AGTR1   10000 perm   2 sec   (6034 perm/sec)   p_kst 1.172000e-01   p_cons 9.495000e-01   p_joint 2.762000e-01

Joint ci ratio: 4.824761e-02	ci left: 2.421261e-01	ci right 2.541472e-01	k: 4962	n:20000
Cons ci ratio: 6.474546e-03	ci left: 9.451405e-01	ci right 9.513283e-01	k: 18966	n:20000
KS ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
AGTR1   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.159000e-01   p_cons 9.483000e-01   p_joint 2.481000e-01

Outputting figure to mutsig2_images.part000000000005/AGTR1.5_1084_20000_0.1159_0.9483_0.2481.png
                gene_name: AGTR1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
AHSG
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
Cons ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
KS ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
AHSG   10000 perm   2 sec   (5814 perm/sec)   p_kst 3.739000e-01   p_cons 7.292000e-01   p_joint 6.841000e-01

Outputting figure to mutsig2_images.part000000000005/AHSG.4_1132_10000_0.3739_0.7292_0.6841.png
                gene_name: AHSG
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 47 percent done.
AIM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
Cons ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
KS ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
AIM1L   10000 perm   2 sec   (5488 perm/sec)   p_kst 4.912000e-01   p_cons 1.636000e-01   p_joint 2.518000e-01

Outputting figure to mutsig2_images.part000000000005/AIM1L.5_1915_10000_0.4912_0.1636_0.2518.png
                gene_name: AIM1L
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 48 percent done.
AKAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
Cons ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
KS ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
AKAP12   10000 perm   3 sec   (3941 perm/sec)   p_kst 3.448000e-01   p_cons 1.988000e-01   p_joint 3.781000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP12.5_5390_10000_0.3448_0.1988_0.3781.png
                gene_name: AKAP12
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 50 percent done.
AGAP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
AGAP11   10000 perm   2 sec   (5620 perm/sec)   p_kst 8.327000e-01   p_cons 9.420000e-02   p_joint 3.196000e-01

Joint ci ratio: 4.029985e-02	ci left: 3.146306e-01	ci right 3.276214e-01	k: 6422	n:20000
Cons ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
KS ci ratio: 1.238032e-02	ci left: 8.284662e-01	ci right 8.388366e-01	k: 16674	n:20000
AGAP11   20000 perm   4 sec   (4919 perm/sec)   p_kst 8.337000e-01   p_cons 9.365000e-02   p_joint 3.211000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP11.4_1669_20000_0.8337_0.09365_0.3211.png
                gene_name: AGAP11
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 52 percent done.
AGAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
AGAP7   10000 perm   2 sec   (5673 perm/sec)   p_kst 3.613000e-01   p_cons 2.275000e-01   p_joint 3.161000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP7.4_2020_10000_0.3613_0.2275_0.3161.png
                gene_name: AGAP7
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 53 percent done.
AGBL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
KS ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
AGBL5   10000 perm   2 sec   (4978 perm/sec)   p_kst 9.940000e-02   p_cons 9.302000e-01   p_joint 1.952000e-01

Joint ci ratio: 6.207284e-02	ci left: 1.610646e-01	ci right 1.714326e-01	k: 3324	n:20000
Cons ci ratio: 7.355433e-03	ci left: 9.307265e-01	ci right 9.376466e-01	k: 18685	n:20000
KS ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
AGBL5   20000 perm   5 sec   (4369 perm/sec)   p_kst 1.002000e-01   p_cons 9.342500e-01   p_joint 1.662000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL5.4_2782_20000_0.1002_0.93425_0.1662.png
                gene_name: AGBL5
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 55 percent done.
AIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
Cons ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
AIM2   10000 perm   2 sec   (6599 perm/sec)   p_kst 8.846000e-01   p_cons 2.252000e-01   p_joint 4.921000e-01

Outputting figure to mutsig2_images.part000000000005/AIM2.4_1052_10000_0.8846_0.2252_0.4921.png
                gene_name: AIM2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 56 percent done.
AJAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
Cons ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
AJAP1   10000 perm   2 sec   (6007 perm/sec)   p_kst 1.441000e-01   p_cons 7.710000e-01   p_joint 2.608000e-01

Outputting figure to mutsig2_images.part000000000005/AJAP1.4_1256_10000_0.1441_0.771_0.2608.png
                gene_name: AJAP1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 58 percent done.
AKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
AKAP1   10000 perm   2 sec   (5133 perm/sec)   p_kst 6.935000e-01   p_cons 6.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AKAP1.4_2752_10000_0.6935_0.6954_1.png
                gene_name: AKAP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
AGFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
AGFG2   10000 perm   2 sec   (6027 perm/sec)   p_kst 2.079000e-01   p_cons 4.300000e-02   p_joint 8.570000e-02

Joint ci ratio: 6.083705e-02	ci left: 1.666447e-01	ci right 1.771509e-01	k: 3437	n:20000
Cons ci ratio: 1.299748e-01	ci left: 4.066614e-02	ci right 4.636753e-02	k: 869	n:20000
KS ci ratio: 5.382621e-02	ci left: 2.039271e-01	ci right 2.152575e-01	k: 4191	n:20000
AGFG2   20000 perm   4 sec   (5157 perm/sec)   p_kst 2.095500e-01   p_cons 4.345000e-02   p_joint 1.718500e-01

Joint ci ratio: 5.218662e-02	ci left: 1.541530e-01	ci right 1.624466e-01	k: 4748	n:30000
Cons ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
KS ci ratio: 4.404659e-02	ci left: 2.042454e-01	ci right 2.134777e-01	k: 6265	n:30000
AGFG2   30000 perm   6 sec   (4860 perm/sec)   p_kst 2.088333e-01   p_cons 4.373333e-02   p_joint 1.582667e-01

Joint ci ratio: 4.530135e-02	ci left: 1.540913e-01	ci right 1.612585e-01	k: 6306	n:40000
Cons ci ratio: 9.066124e-02	ci left: 4.262216e-02	ci right 4.669427e-02	k: 1785	n:40000
KS ci ratio: 3.827490e-02	ci left: 2.037582e-01	ci right 2.117342e-01	k: 8309	n:40000
AGFG2   40000 perm   9 sec   (4629 perm/sec)   p_kst 2.077250e-01   p_cons 4.462500e-02   p_joint 1.576500e-01

Outputting figure to mutsig2_images.part000000000005/AGFG2.3_1494_40000_0.20772_0.044625_0.15765.png
                gene_name: AGFG2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 61 percent done.
AGPAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
KS ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
AGPAT2   10000 perm   1 sec   (6738 perm/sec)   p_kst 1.278000e-01   p_cons 5.741000e-01   p_joint 2.454000e-01

Joint ci ratio: 4.914329e-02	ci left: 2.353830e-01	ci right 2.472922e-01	k: 4826	n:20000
Cons ci ratio: 2.381194e-02	ci left: 5.684641e-01	ci right 5.822140e-01	k: 11507	n:20000
KS ci ratio: 7.275430e-02	ci left: 1.221195e-01	ci right 1.313893e-01	k: 2534	n:20000
AGPAT2   20000 perm   4 sec   (5677 perm/sec)   p_kst 1.267000e-01   p_cons 5.753500e-01   p_joint 2.413000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT2.3_861_20000_0.1267_0.57535_0.2413.png
                gene_name: AGPAT2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 63 percent done.
AGPAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
AGPAT3   10000 perm   2 sec   (6195 perm/sec)   p_kst 6.562000e-01   p_cons 8.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGPAT3.3_1163_10000_0.6562_0.8367_1.png
                gene_name: AGPAT3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
AGPAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
Cons ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
AGPAT4   10000 perm   2 sec   (6215 perm/sec)   p_kst 6.879000e-01   p_cons 4.865000e-01   p_joint 8.176000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT4.3_1169_10000_0.6879_0.4865_0.8176.png
                gene_name: AGPAT4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 66 percent done.
AGPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
Cons ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
AGPS   10000 perm   2 sec   (6264 perm/sec)   p_kst 4.689000e-01   p_cons 5.851000e-01   p_joint 6.483000e-01

Outputting figure to mutsig2_images.part000000000005/AGPS.3_2057_10000_0.4689_0.5851_0.6483.png
                gene_name: AGPS
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 68 percent done.
AGTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
AGTPBP1   10000 perm   2 sec   (4960 perm/sec)   p_kst 2.700000e-03   p_cons 5.830000e-02   p_joint 4.400000e-03

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 1.111972e-01	ci left: 5.523815e-02	ci right 6.179094e-02	k: 1169	n:20000
KS ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
AGTPBP1   20000 perm   5 sec   (4352 perm/sec)   p_kst 2.750000e-03   p_cons 5.845000e-02   p_joint 6.600000e-03

Joint ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
Cons ci ratio: 9.280342e-02	ci left: 5.352247e-02	ci right 5.876390e-02	k: 1683	n:30000
KS ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
AGTPBP1   30000 perm   7 sec   (4091 perm/sec)   p_kst 2.366667e-03   p_cons 5.610000e-02   p_joint 4.333333e-03

Joint ci ratio: 3.008971e-01	ci left: 3.589952e-03	ci right 4.883651e-03	k: 168	n:40000
Cons ci ratio: 8.047172e-02	ci left: 5.374208e-02	ci right 5.827265e-02	k: 2239	n:40000
KS ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
AGTPBP1   40000 perm   10 sec   (3950 perm/sec)   p_kst 2.875000e-03   p_cons 5.597500e-02   p_joint 4.200000e-03

Joint ci ratio: 3.228373e-01	ci left: 2.466107e-03	ci right 3.433034e-03	k: 146	n:50000
Cons ci ratio: 7.193544e-02	ci left: 5.403983e-02	ci right 5.809191e-02	k: 2802	n:50000
KS ci ratio: 3.284884e-01	ci left: 2.374263e-03	ci right 3.324917e-03	k: 141	n:50000
AGTPBP1   50000 perm   13 sec   (3853 perm/sec)   p_kst 2.820000e-03   p_cons 5.604000e-02   p_joint 2.920000e-03

Joint ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
Cons ci ratio: 6.548861e-02	ci left: 5.450163e-02	ci right 5.820810e-02	k: 3380	n:60000
KS ci ratio: 3.002216e-01	ci left: 2.408480e-03	ci right 3.274056e-03	k: 169	n:60000
AGTPBP1   60000 perm   16 sec   (3737 perm/sec)   p_kst 2.816667e-03   p_cons 5.633333e-02   p_joint 1.366667e-03

Joint ci ratio: 3.998060e-01	ci left: 1.098144e-03	ci right 1.658786e-03	k: 95	n:70000
Cons ci ratio: 6.026328e-02	ci left: 5.527968e-02	ci right 5.872858e-02	k: 3989	n:70000
KS ci ratio: 2.747289e-01	ci left: 2.501929e-03	ci right 3.311578e-03	k: 202	n:70000
AGTPBP1   70000 perm   19 sec   (3669 perm/sec)   p_kst 2.885714e-03   p_cons 5.698571e-02   p_joint 1.357143e-03

Joint ci ratio: 3.917525e-01	ci left: 1.005889e-03	ci right 1.506409e-03	k: 99	n:80000
Cons ci ratio: 5.664171e-02	ci left: 5.488527e-02	ci right 5.809699e-02	k: 4518	n:80000
KS ci ratio: 2.688681e-01	ci left: 2.293987e-03	ci right 3.017832e-03	k: 211	n:80000
AGTPBP1   80000 perm   22 sec   (3607 perm/sec)   p_kst 2.637500e-03   p_cons 5.647500e-02   p_joint 1.237500e-03

Joint ci ratio: 4.275051e-01	ci left: 7.346097e-04	ci right 1.143107e-03	k: 83	n:90000
Cons ci ratio: 5.369895e-02	ci left: 5.439694e-02	ci right 5.740954e-02	k: 5030	n:90000
KS ci ratio: 2.526959e-01	ci left: 2.329897e-03	ci right 3.013897e-03	k: 239	n:90000
AGTPBP1   90000 perm   25 sec   (3551 perm/sec)   p_kst 2.655556e-03   p_cons 5.588889e-02   p_joint 9.222222e-04

Joint ci ratio: 4.524706e-01	ci left: 5.811024e-04	ci right 9.289144e-04	k: 74	n:100000
Cons ci ratio: 5.097230e-02	ci left: 5.441489e-02	ci right 5.727094e-02	k: 5583	n:100000
KS ci ratio: 2.432601e-01	ci left: 2.275095e-03	ci right 2.914300e-03	k: 258	n:100000
AGTPBP1   100000 perm   29 sec   (3496 perm/sec)   p_kst 2.580000e-03   p_cons 5.583000e-02   p_joint 7.400000e-04

Joint ci ratio: 2.538197e-01	ci left: 1.889195e-03	ci right 2.446665e-03	k: 237	n:110000
Cons ci ratio: 4.862284e-02	ci left: 5.443276e-02	ci right 5.715435e-02	k: 6136	n:110000
KS ci ratio: 2.331321e-01	ci left: 2.264884e-03	ci right 2.870909e-03	k: 281	n:110000
AGTPBP1   110000 perm   32 sec   (3432 perm/sec)   p_kst 2.554545e-03   p_cons 5.578182e-02   p_joint 2.154545e-03

Joint ci ratio: 2.543787e-01	ci left: 1.723940e-03	ci right 2.233942e-03	k: 236	n:120000
Cons ci ratio: 4.643875e-02	ci left: 5.474690e-02	ci right 5.735794e-02	k: 6725	n:120000
KS ci ratio: 2.216367e-01	ci left: 2.311917e-03	ci right 2.895868e-03	k: 311	n:120000
AGTPBP1   120000 perm   36 sec   (3377 perm/sec)   p_kst 2.591667e-03   p_cons 5.604167e-02   p_joint 1.966667e-03

Joint ci ratio: 2.533296e-01	ci left: 1.605722e-03	ci right 2.078481e-03	k: 238	n:130000
Cons ci ratio: 4.453443e-02	ci left: 5.499218e-02	ci right 5.750458e-02	k: 7311	n:130000
KS ci ratio: 2.101548e-01	ci left: 2.388769e-03	ci right 2.956853e-03	k: 346	n:130000
AGTPBP1   130000 perm   39 sec   (3326 perm/sec)   p_kst 2.661538e-03   p_cons 5.623846e-02   p_joint 1.830769e-03

Joint ci ratio: 2.260779e-01	ci left: 1.900688e-03	ci right 2.391726e-03	k: 299	n:140000
Cons ci ratio: 4.295627e-02	ci left: 5.493559e-02	ci right 5.735426e-02	k: 7859	n:140000
KS ci ratio: 2.010834e-01	ci left: 2.434956e-03	ci right 2.985962e-03	k: 378	n:140000
AGTPBP1   140000 perm   43 sec   (3276 perm/sec)   p_kst 2.700000e-03   p_cons 5.613571e-02   p_joint 2.135714e-03

Joint ci ratio: 2.245987e-01	ci left: 1.799126e-03	ci right 2.260463e-03	k: 303	n:150000
Cons ci ratio: 4.152173e-02	ci left: 5.492093e-02	ci right 5.725627e-02	k: 8412	n:150000
KS ci ratio: 1.945226e-01	ci left: 2.437376e-03	ci right 2.968803e-03	k: 404	n:150000
AGTPBP1   150000 perm   46 sec   (3226 perm/sec)   p_kst 2.693333e-03   p_cons 5.608000e-02   p_joint 2.020000e-03

Joint ci ratio: 2.158936e-01	ci left: 1.834317e-03	ci right 2.284032e-03	k: 328	n:160000
Cons ci ratio: 4.023857e-02	ci left: 5.486595e-02	ci right 5.712517e-02	k: 8958	n:160000
KS ci ratio: 1.872622e-01	ci left: 2.475489e-03	ci right 2.992792e-03	k: 436	n:160000
AGTPBP1   160000 perm   50 sec   (3182 perm/sec)   p_kst 2.725000e-03   p_cons 5.598750e-02   p_joint 2.050000e-03

Joint ci ratio: 2.196163e-01	ci left: 1.665223e-03	ci right 2.081471e-03	k: 317	n:170000
Cons ci ratio: 3.899581e-02	ci left: 5.501076e-02	ci right 5.720441e-02	k: 9537	n:170000
KS ci ratio: 1.855819e-01	ci left: 2.374723e-03	ci right 2.866013e-03	k: 444	n:170000
AGTPBP1   170000 perm   54 sec   (3136 perm/sec)   p_kst 2.611765e-03   p_cons 5.610000e-02   p_joint 1.864706e-03

Joint ci ratio: 2.265105e-01	ci left: 1.473034e-03	ci right 1.854415e-03	k: 298	n:180000
Cons ci ratio: 3.778440e-02	ci left: 5.535517e-02	ci right 5.749248e-02	k: 10155	n:180000
KS ci ratio: 1.817462e-01	ci left: 2.343493e-03	ci right 2.817198e-03	k: 463	n:180000
AGTPBP1   180000 perm   58 sec   (3094 perm/sec)   p_kst 2.572222e-03   p_cons 5.641667e-02   p_joint 1.655556e-03

Joint ci ratio: 2.477588e-01	ci left: 1.152878e-03	ci right 1.483691e-03	k: 249	n:190000
Cons ci ratio: 3.676614e-02	ci left: 5.541380e-02	ci right 5.749450e-02	k: 10725	n:190000
KS ci ratio: 1.763183e-01	ci left: 2.365946e-03	ci right 2.828385e-03	k: 492	n:190000
AGTPBP1   190000 perm   62 sec   (3052 perm/sec)   p_kst 2.589474e-03   p_cons 5.644737e-02   p_joint 1.310526e-03

Joint ci ratio: 2.544798e-01	ci left: 1.034315e-03	ci right 1.340437e-03	k: 236	n:200000
Cons ci ratio: 3.581592e-02	ci left: 5.549701e-02	ci right 5.752587e-02	k: 11301	n:200000
KS ci ratio: 1.706948e-01	ci left: 2.405489e-03	ci right 2.859118e-03	k: 525	n:200000
AGTPBP1   200000 perm   66 sec   (3011 perm/sec)   p_kst 2.625000e-03   p_cons 5.650500e-02   p_joint 1.180000e-03

Joint ci ratio: 1.998582e-01	ci left: 1.645850e-03	ci right 2.015737e-03	k: 383	n:210000
Cons ci ratio: 3.494356e-02	ci left: 5.554931e-02	ci right 5.752962e-02	k: 11872	n:210000
KS ci ratio: 1.667780e-01	ci left: 2.404962e-03	ci right 2.847040e-03	k: 550	n:210000
AGTPBP1   210000 perm   71 sec   (2969 perm/sec)   p_kst 2.619048e-03   p_cons 5.653333e-02   p_joint 1.823810e-03

Joint ci ratio: 1.655872e-01	ci left: 2.330490e-03	ci right 2.755514e-03	k: 558	n:220000
Cons ci ratio: 3.417713e-02	ci left: 5.545763e-02	ci right 5.739044e-02	k: 12412	n:220000
KS ci ratio: 1.625541e-01	ci left: 2.422034e-03	ci right 2.854872e-03	k: 579	n:220000
AGTPBP1   220000 perm   75 sec   (2931 perm/sec)   p_kst 2.631818e-03   p_cons 5.641818e-02   p_joint 2.536364e-03

Joint ci ratio: 1.657451e-01	ci left: 2.224986e-03	ci right 2.631194e-03	k: 557	n:230000
Cons ci ratio: 3.345080e-02	ci left: 5.540023e-02	ci right 5.728923e-02	k: 12958	n:230000
KS ci ratio: 1.582453e-01	ci left: 2.450277e-03	ci right 2.875454e-03	k: 611	n:230000
AGTPBP1   230000 perm   80 sec   (2887 perm/sec)   p_kst 2.656522e-03   p_cons 5.633913e-02   p_joint 2.421739e-03

Joint ci ratio: 1.692870e-01	ci left: 2.040446e-03	ci right 2.421735e-03	k: 534	n:240000
Cons ci ratio: 3.273679e-02	ci left: 5.545139e-02	ci right 5.730101e-02	k: 13529	n:240000
KS ci ratio: 1.547445e-01	ci left: 2.460282e-03	ci right 2.876874e-03	k: 639	n:240000
AGTPBP1   240000 perm   84 sec   (2848 perm/sec)   p_kst 2.662500e-03   p_cons 5.637083e-02   p_joint 2.225000e-03

Joint ci ratio: 1.653164e-01	ci left: 2.058475e-03	ci right 2.433214e-03	k: 560	n:250000
Cons ci ratio: 3.207266e-02	ci left: 5.547900e-02	ci right 5.729130e-02	k: 14095	n:250000
KS ci ratio: 1.518085e-01	ci left: 2.458035e-03	ci right 2.865632e-03	k: 664	n:250000
AGTPBP1   250000 perm   89 sec   (2813 perm/sec)   p_kst 2.656000e-03   p_cons 5.638000e-02   p_joint 2.240000e-03

Joint ci ratio: 1.651761e-01	ci left: 1.982984e-03	ci right 2.343642e-03	k: 561	n:260000
Cons ci ratio: 3.145193e-02	ci left: 5.548956e-02	ci right 5.726649e-02	k: 14657	n:260000
KS ci ratio: 1.483879e-01	ci left: 2.478250e-03	ci right 2.879118e-03	k: 695	n:260000
AGTPBP1   260000 perm   94 sec   (2779 perm/sec)   p_kst 2.673077e-03   p_cons 5.637308e-02   p_joint 2.157692e-03

Joint ci ratio: 1.702674e-01	ci left: 1.792432e-03	ci right 2.129513e-03	k: 528	n:270000
Cons ci ratio: 3.083906e-02	ci left: 5.559158e-02	ci right 5.733647e-02	k: 15244	n:270000
KS ci ratio: 1.452888e-01	ci left: 2.493493e-03	ci right 2.887673e-03	k: 725	n:270000
AGTPBP1   270000 perm   98 sec   (2745 perm/sec)   p_kst 2.685185e-03   p_cons 5.645926e-02   p_joint 1.955556e-03

Joint ci ratio: 1.948862e-01	ci left: 1.302264e-03	ci right 1.586787e-03	k: 403	n:280000
Cons ci ratio: 3.026169e-02	ci left: 5.568307e-02	ci right 5.739755e-02	k: 15830	n:280000
KS ci ratio: 1.423762e-01	ci left: 2.507729e-03	ci right 2.895536e-03	k: 755	n:280000
AGTPBP1   280000 perm   103 sec   (2711 perm/sec)   p_kst 2.696429e-03   p_cons 5.653571e-02   p_joint 1.439286e-03

Joint ci ratio: 1.986182e-01	ci left: 1.208176e-03	ci right 1.477810e-03	k: 388	n:290000
Cons ci ratio: 2.974246e-02	ci left: 5.567266e-02	ci right 5.735690e-02	k: 16388	n:290000
KS ci ratio: 1.397211e-01	ci left: 2.517727e-03	ci right 2.899215e-03	k: 784	n:290000
AGTPBP1   290000 perm   108 sec   (2678 perm/sec)   p_kst 2.703448e-03   p_cons 5.651034e-02   p_joint 1.337931e-03

Joint ci ratio: 1.956243e-01	ci left: 1.205929e-03	ci right 1.470521e-03	k: 400	n:300000
Cons ci ratio: 2.921712e-02	ci left: 5.577905e-02	ci right 5.743620e-02	k: 16981	n:300000
KS ci ratio: 1.369563e-01	ci left: 2.536780e-03	ci right 2.912929e-03	k: 816	n:300000
AGTPBP1   300000 perm   113 sec   (2647 perm/sec)   p_kst 2.720000e-03   p_cons 5.660333e-02   p_joint 1.333333e-03

Joint ci ratio: 1.922961e-01	ci left: 1.209997e-03	ci right 1.470436e-03	k: 414	n:310000
Cons ci ratio: 2.872473e-02	ci left: 5.585638e-02	ci right 5.748740e-02	k: 17567	n:310000
KS ci ratio: 1.346680e-01	ci left: 2.542202e-03	ci right 2.912352e-03	k: 844	n:310000
AGTPBP1   310000 perm   119 sec   (2615 perm/sec)   p_kst 2.722581e-03   p_cons 5.666774e-02   p_joint 1.335484e-03

Joint ci ratio: 1.906965e-01	ci left: 1.193010e-03	ci right 1.447409e-03	k: 421	n:320000
Cons ci ratio: 2.825311e-02	ci left: 5.594152e-02	ci right 5.754777e-02	k: 18157	n:320000
KS ci ratio: 1.324906e-01	ci left: 2.547335e-03	ci right 2.911763e-03	k: 872	n:320000
AGTPBP1   320000 perm   124 sec   (2586 perm/sec)   p_kst 2.725000e-03   p_cons 5.674063e-02   p_joint 1.315625e-03

Joint ci ratio: 1.889157e-01	ci left: 1.179948e-03	ci right 1.428942e-03	k: 429	n:330000
Cons ci ratio: 2.785838e-02	ci left: 5.581398e-02	ci right 5.739382e-02	k: 18678	n:330000
KS ci ratio: 1.301262e-01	ci left: 2.563929e-03	ci right 2.923680e-03	k: 904	n:330000
AGTPBP1   330000 perm   129 sec   (2558 perm/sec)   p_kst 2.739394e-03   p_cons 5.660000e-02   p_joint 1.300000e-03

Joint ci ratio: 1.693427e-01	ci left: 1.440276e-03	ci right 1.709510e-03	k: 534	n:340000
Cons ci ratio: 2.743509e-02	ci left: 5.586650e-02	ci right 5.742342e-02	k: 19258	n:340000
KS ci ratio: 1.280898e-01	ci left: 2.571059e-03	ci right 2.925736e-03	k: 933	n:340000
AGTPBP1   340000 perm   134 sec   (2530 perm/sec)   p_kst 2.744118e-03   p_cons 5.664118e-02   p_joint 1.570588e-03

Joint ci ratio: 1.753579e-01	ci left: 1.300696e-03	ci right 1.553389e-03	k: 498	n:350000
Cons ci ratio: 2.603705e-02	ci left: 6.003042e-02	ci right 6.161686e-02	k: 21287	n:350000
KS ci ratio: 1.264758e-01	ci left: 2.563987e-03	ci right 2.912898e-03	k: 957	n:350000
AGTPBP1   350000 perm   140 sec   (2501 perm/sec)   p_kst 2.734286e-03   p_cons 6.082000e-02   p_joint 1.422857e-03

Joint ci ratio: 1.788031e-01	ci left: 1.214122e-03	ci right 1.455131e-03	k: 479	n:360000
Cons ci ratio: 2.569365e-02	ci left: 5.994976e-02	ci right 6.151287e-02	k: 21862	n:360000
KS ci ratio: 1.248576e-01	ci left: 2.560027e-03	ci right 2.903611e-03	k: 982	n:360000
AGTPBP1   360000 perm   146 sec   (2473 perm/sec)   p_kst 2.727778e-03   p_cons 6.072778e-02   p_joint 1.330556e-03

Joint ci ratio: 1.760728e-01	ci left: 1.220048e-03	ci right 1.458142e-03	k: 494	n:370000
Cons ci ratio: 2.533104e-02	ci left: 6.001868e-02	ci right 6.156118e-02	k: 22491	n:370000
KS ci ratio: 1.232386e-01	ci left: 2.558926e-03	ci right 2.897585e-03	k: 1008	n:370000
AGTPBP1   370000 perm   151 sec   (2447 perm/sec)   p_kst 2.724324e-03   p_cons 6.078649e-02   p_joint 1.335135e-03

Joint ci ratio: 1.741490e-01	ci left: 1.215620e-03	ci right 1.449985e-03	k: 505	n:380000
Cons ci ratio: 2.499949e-02	ci left: 6.001086e-02	ci right 6.153269e-02	k: 23092	n:380000
KS ci ratio: 1.217401e-01	ci left: 2.555360e-03	ci right 2.889137e-03	k: 1033	n:380000
AGTPBP1   380000 perm   157 sec   (2418 perm/sec)   p_kst 2.718421e-03   p_cons 6.076842e-02   p_joint 1.328947e-03

Joint ci ratio: 1.536267e-01	ci left: 1.538615e-03	ci right 1.797085e-03	k: 649	n:390000
Cons ci ratio: 2.466511e-02	ci left: 6.007495e-02	ci right 6.157774e-02	k: 23721	n:390000
KS ci ratio: 1.203519e-01	ci left: 2.549512e-03	ci right 2.878458e-03	k: 1057	n:390000
AGTPBP1   390000 perm   163 sec   (2393 perm/sec)   p_kst 2.710256e-03   p_cons 6.082308e-02   p_joint 1.664103e-03

Joint ci ratio: 1.521138e-01	ci left: 1.531406e-03	ci right 1.785901e-03	k: 662	n:400000
Cons ci ratio: 2.435072e-02	ci left: 6.010365e-02	ci right 6.158772e-02	k: 24337	n:400000
KS ci ratio: 1.188999e-01	ci left: 2.548829e-03	ci right 2.873441e-03	k: 1083	n:400000
AGTPBP1   400000 perm   169 sec   (2369 perm/sec)   p_kst 2.707500e-03   p_cons 6.084250e-02   p_joint 1.655000e-03

Joint ci ratio: 1.358453e-01	ci left: 1.889118e-03	ci right 2.166775e-03	k: 830	n:410000
Cons ci ratio: 2.403677e-02	ci left: 6.018442e-02	ci right 6.165106e-02	k: 24975	n:410000
KS ci ratio: 1.176056e-01	ci left: 2.543467e-03	ci right 2.863625e-03	k: 1107	n:410000
AGTPBP1   410000 perm   175 sec   (2345 perm/sec)   p_kst 2.700000e-03   p_cons 6.091463e-02   p_joint 2.024390e-03

Joint ci ratio: 1.346364e-01	ci left: 1.878645e-03	ci right 2.152108e-03	k: 845	n:420000
Cons ci ratio: 2.374997e-02	ci left: 6.018806e-02	ci right 6.163705e-02	k: 25582	n:420000
KS ci ratio: 1.163012e-01	ci left: 2.540691e-03	ci right 2.856708e-03	k: 1132	n:420000
AGTPBP1   420000 perm   181 sec   (2321 perm/sec)   p_kst 2.695238e-03   p_cons 6.090952e-02   p_joint 2.011905e-03

Joint ci ratio: 1.333042e-01	ci left: 1.873165e-03	ci right 2.142919e-03	k: 862	n:430000
Cons ci ratio: 2.349039e-02	ci left: 6.010837e-02	ci right 6.153941e-02	k: 26153	n:430000
KS ci ratio: 1.151889e-01	ci left: 2.531286e-03	ci right 2.842917e-03	k: 1154	n:430000
AGTPBP1   430000 perm   187 sec   (2298 perm/sec)   p_kst 2.683721e-03   p_cons 6.082093e-02   p_joint 2.004651e-03

Joint ci ratio: 1.322369e-01	ci left: 1.861353e-03	ci right 2.127091e-03	k: 876	n:440000
Cons ci ratio: 2.323358e-02	ci left: 6.005951e-02	ci right 6.147355e-02	k: 26736	n:440000
KS ci ratio: 1.137210e-01	ci left: 2.539987e-03	ci right 2.848438e-03	k: 1184	n:440000
AGTPBP1   440000 perm   193 sec   (2275 perm/sec)   p_kst 2.690909e-03   p_cons 6.076364e-02   p_joint 1.990909e-03

Joint ci ratio: 1.298151e-01	ci left: 1.890921e-03	ci right 2.155556e-03	k: 909	n:450000
Cons ci ratio: 2.297562e-02	ci left: 6.005932e-02	ci right 6.145745e-02	k: 27340	n:450000
KS ci ratio: 1.125870e-01	ci left: 2.535366e-03	ci right 2.839982e-03	k: 1208	n:450000
AGTPBP1   450000 perm   200 sec   (2252 perm/sec)   p_kst 2.684444e-03   p_cons 6.075556e-02   p_joint 2.020000e-03

Joint ci ratio: 1.159563e-01	ci left: 2.334522e-03	ci right 2.623975e-03	k: 1139	n:460000
Cons ci ratio: 2.272520e-02	ci left: 6.006355e-02	ci right 6.144634e-02	k: 27946	n:460000
KS ci ratio: 1.110805e-01	ci left: 2.549983e-03	ci right 2.851987e-03	k: 1241	n:460000
AGTPBP1   460000 perm   206 sec   (2228 perm/sec)   p_kst 2.697826e-03   p_cons 6.075217e-02   p_joint 2.476087e-03

Joint ci ratio: 1.150026e-01	ci left: 2.324109e-03	ci right 2.609740e-03	k: 1158	n:470000
Cons ci ratio: 2.247608e-02	ci left: 6.010154e-02	ci right 6.146984e-02	k: 28568	n:470000
KS ci ratio: 1.103731e-01	ci left: 2.528826e-03	ci right 2.826293e-03	k: 1257	n:470000
AGTPBP1   470000 perm   213 sec   (2205 perm/sec)   p_kst 2.674468e-03   p_cons 6.078298e-02   p_joint 2.463830e-03

Joint ci ratio: 1.138302e-01	ci left: 2.324259e-03	ci right 2.606800e-03	k: 1182	n:480000
Cons ci ratio: 2.224879e-02	ci left: 6.006756e-02	ci right 6.142108e-02	k: 29156	n:480000
KS ci ratio: 1.093782e-01	ci left: 2.522742e-03	ci right 2.816646e-03	k: 1280	n:480000
AGTPBP1   480000 perm   220 sec   (2183 perm/sec)   p_kst 2.666667e-03   p_cons 6.074167e-02   p_joint 2.462500e-03

Joint ci ratio: 1.179522e-01	ci left: 2.116296e-03	ci right 2.383522e-03	k: 1101	n:490000
Cons ci ratio: 2.201525e-02	ci left: 6.010204e-02	ci right 6.144194e-02	k: 29777	n:490000
KS ci ratio: 1.085768e-01	ci left: 2.508975e-03	ci right 2.798996e-03	k: 1299	n:490000
AGTPBP1   490000 perm   227 sec   (2161 perm/sec)   p_kst 2.651020e-03   p_cons 6.076939e-02   p_joint 2.246939e-03

Joint ci ratio: 1.167401e-01	ci left: 2.118620e-03	ci right 2.383201e-03	k: 1124	n:500000
Cons ci ratio: 2.179502e-02	ci left: 6.010337e-02	ci right 6.142973e-02	k: 30382	n:500000
KS ci ratio: 1.075071e-01	ci left: 2.509390e-03	ci right 2.796421e-03	k: 1325	n:500000
AGTPBP1   500000 perm   234 sec   (2140 perm/sec)   p_kst 2.650000e-03   p_cons 6.076400e-02   p_joint 2.248000e-03

Joint ci ratio: 1.159704e-01	ci left: 2.105633e-03	ci right 2.366740e-03	k: 1139	n:510000
Cons ci ratio: 2.156646e-02	ci left: 6.018275e-02	ci right 6.149676e-02	k: 31027	n:510000
KS ci ratio: 1.066267e-01	ci left: 2.502168e-03	ci right 2.785882e-03	k: 1347	n:510000
AGTPBP1   510000 perm   241 sec   (2120 perm/sec)   p_kst 2.641176e-03   p_cons 6.083725e-02   p_joint 2.233333e-03

Joint ci ratio: 1.255517e-01	ci left: 1.753652e-03	ci right 1.990415e-03	k: 972	n:520000
Cons ci ratio: 2.135966e-02	ci left: 6.018069e-02	ci right 6.148190e-02	k: 31631	n:520000
KS ci ratio: 1.059616e-01	ci left: 2.485872e-03	ci right 2.765870e-03	k: 1364	n:520000
AGTPBP1   520000 perm   248 sec   (2100 perm/sec)   p_kst 2.623077e-03   p_cons 6.082885e-02   p_joint 1.869231e-03

Joint ci ratio: 1.249762e-01	ci left: 1.737012e-03	ci right 1.970374e-03	k: 981	n:530000
Cons ci ratio: 2.116744e-02	ci left: 6.013183e-02	ci right 6.142014e-02	k: 32210	n:530000
KS ci ratio: 1.052706e-01	ci left: 2.472033e-03	ci right 2.748544e-03	k: 1382	n:530000
AGTPBP1   530000 perm   255 sec   (2081 perm/sec)   p_kst 2.607547e-03   p_cons 6.077358e-02   p_joint 1.850943e-03

Joint ci ratio: 1.242202e-01	ci left: 1.726374e-03	ci right 1.956801e-03	k: 993	n:540000
Cons ci ratio: 2.096331e-02	ci left: 6.017697e-02	ci right 6.145367e-02	k: 32839	n:540000
KS ci ratio: 1.040729e-01	ci left: 2.483963e-03	ci right 2.758454e-03	k: 1414	n:540000
AGTPBP1   540000 perm   262 sec   (2062 perm/sec)   p_kst 2.618519e-03   p_cons 6.081296e-02   p_joint 1.838889e-03

Joint ci ratio: 1.353108e-01	ci left: 1.420524e-03	ci right 1.628420e-03	k: 837	n:550000
Cons ci ratio: 2.076662e-02	ci left: 6.021149e-02	ci right 6.147678e-02	k: 33463	n:550000
KS ci ratio: 1.029152e-01	ci left: 2.495476e-03	ci right 2.767987e-03	k: 1446	n:550000
AGTPBP1   550000 perm   269 sec   (2044 perm/sec)   p_kst 2.629091e-03   p_cons 6.084182e-02   p_joint 1.521818e-03

Joint ci ratio: 1.345908e-01	ci left: 1.410686e-03	ci right 1.615955e-03	k: 846	n:560000
Cons ci ratio: 2.059113e-02	ci left: 6.015774e-02	ci right 6.141110e-02	k: 34038	n:560000
KS ci ratio: 1.021072e-01	ci left: 2.490932e-03	ci right 2.760683e-03	k: 1469	n:560000
AGTPBP1   560000 perm   277 sec   (2025 perm/sec)   p_kst 2.623214e-03   p_cons 6.078214e-02   p_joint 1.510714e-03

Joint ci ratio: 1.382362e-01	ci left: 1.311373e-03	ci right 1.507785e-03	k: 802	n:570000
Cons ci ratio: 2.039368e-02	ci left: 6.025259e-02	ci right 6.149574e-02	k: 34697	n:570000
KS ci ratio: 1.013860e-01	ci left: 2.483136e-03	ci right 2.750030e-03	k: 1490	n:570000
AGTPBP1   570000 perm   284 sec   (2007 perm/sec)   p_kst 2.614035e-03   p_cons 6.087193e-02   p_joint 1.407018e-03

Joint ci ratio: 1.372150e-01	ci left: 1.308740e-03	ci right 1.503191e-03	k: 814	n:580000
Cons ci ratio: 2.022495e-02	ci left: 6.021380e-02	ci right 6.144576e-02	k: 35280	n:580000
KS ci ratio: 1.003478e-01	ci left: 2.492424e-03	ci right 2.757411e-03	k: 1521	n:580000
AGTPBP1   580000 perm   291 sec   (1990 perm/sec)   p_kst 2.622414e-03   p_cons 6.082759e-02   p_joint 1.403448e-03

Joint ci ratio: 1.373010e-01	ci left: 1.284920e-03	ci right 1.475962e-03	k: 813	n:590000
Cons ci ratio: 2.005946e-02	ci left: 6.018144e-02	ci right 6.140254e-02	k: 35866	n:590000
KS ci ratio: 9.934080e-02	ci left: 2.501410e-03	ci right 2.764528e-03	k: 1552	n:590000
AGTPBP1   590000 perm   299 sec   (1972 perm/sec)   p_kst 2.630508e-03   p_cons 6.078983e-02   p_joint 1.377966e-03

Joint ci ratio: 1.152829e-01	ci left: 1.812431e-03	ci right 2.035756e-03	k: 1153	n:600000
Cons ci ratio: 1.989506e-02	ci left: 6.016678e-02	ci right 6.137747e-02	k: 36462	n:600000
KS ci ratio: 9.845705e-02	ci left: 2.505233e-03	ci right 2.766273e-03	k: 1580	n:600000
AGTPBP1   600000 perm   307 sec   (1954 perm/sec)   p_kst 2.633333e-03   p_cons 6.077000e-02   p_joint 1.921667e-03

Joint ci ratio: 1.144922e-01	ci left: 1.808194e-03	ci right 2.029366e-03	k: 1169	n:610000
Cons ci ratio: 1.973633e-02	ci left: 6.014285e-02	ci right 6.134329e-02	k: 37052	n:610000
KS ci ratio: 9.768784e-02	ci left: 2.504142e-03	ci right 2.762913e-03	k: 1605	n:610000
AGTPBP1   610000 perm   315 sec   (1937 perm/sec)   p_kst 2.631148e-03   p_cons 6.074098e-02   p_joint 1.916393e-03

Joint ci ratio: 1.190674e-01	ci left: 1.641230e-03	ci right 1.850566e-03	k: 1081	n:620000
Cons ci ratio: 1.957774e-02	ci left: 6.014060e-02	ci right 6.133125e-02	k: 37655	n:620000
KS ci ratio: 9.669888e-02	ci left: 2.515685e-03	ci right 2.772868e-03	k: 1638	n:620000
AGTPBP1   620000 perm   323 sec   (1921 perm/sec)   p_kst 2.641935e-03   p_cons 6.073387e-02   p_joint 1.743548e-03

Joint ci ratio: 1.183048e-01	ci left: 1.636741e-03	ci right 1.844074e-03	k: 1095	n:630000
Cons ci ratio: 1.941320e-02	ci left: 6.019535e-02	ci right 6.137695e-02	k: 38294	n:630000
KS ci ratio: 9.602772e-02	ci left: 2.511381e-03	ci right 2.766242e-03	k: 1661	n:630000
AGTPBP1   630000 perm   331 sec   (1905 perm/sec)   p_kst 2.636508e-03   p_cons 6.078413e-02   p_joint 1.738095e-03

Joint ci ratio: 1.176629e-01	ci left: 1.629364e-03	ci right 1.834564e-03	k: 1107	n:640000
Cons ci ratio: 1.926274e-02	ci left: 6.018932e-02	ci right 6.136154e-02	k: 38895	n:640000
KS ci ratio: 9.486365e-02	ci left: 2.534676e-03	ci right 2.788609e-03	k: 1702	n:640000
AGTPBP1   640000 perm   339 sec   (1890 perm/sec)   p_kst 2.659375e-03   p_cons 6.077344e-02   p_joint 1.729688e-03

Joint ci ratio: 1.299988e-01	ci left: 1.306097e-03	ci right 1.489162e-03	k: 907	n:650000
Cons ci ratio: 1.910543e-02	ci left: 6.024477e-02	ci right 6.140838e-02	k: 39536	n:650000
KS ci ratio: 9.444946e-02	ci left: 2.518210e-03	ci right 2.769332e-03	k: 1717	n:650000
AGTPBP1   650000 perm   347 sec   (1874 perm/sec)   p_kst 2.641538e-03   p_cons 6.082462e-02   p_joint 1.395385e-03

Joint ci ratio: 1.291484e-01	ci left: 1.303900e-03	ci right 1.485370e-03	k: 919	n:660000
Cons ci ratio: 1.895820e-02	ci left: 6.026086e-02	ci right 6.141572e-02	k: 40152	n:660000
KS ci ratio: 9.385078e-02	ci left: 2.512604e-03	ci right 2.761491e-03	k: 1739	n:660000
AGTPBP1   660000 perm   355 sec   (1858 perm/sec)   p_kst 2.634848e-03   p_cons 6.083636e-02   p_joint 1.392424e-03

Joint ci ratio: 1.094197e-01	ci left: 1.807301e-03	ci right 2.017938e-03	k: 1280	n:670000
Cons ci ratio: 1.881038e-02	ci left: 6.030029e-02	ci right 6.144680e-02	k: 40784	n:670000
KS ci ratio: 9.307815e-02	ci left: 2.517374e-03	ci right 2.764569e-03	k: 1768	n:670000
AGTPBP1   670000 perm   364 sec   (1842 perm/sec)   p_kst 2.638806e-03   p_cons 6.087164e-02   p_joint 1.910448e-03

Joint ci ratio: 1.094213e-01	ci left: 1.780722e-03	ci right 1.988264e-03	k: 1280	n:680000
Cons ci ratio: 1.866982e-02	ci left: 6.031516e-02	ci right 6.145329e-02	k: 41400	n:680000
KS ci ratio: 9.237582e-02	ci left: 2.519139e-03	ci right 2.764540e-03	k: 1795	n:680000
AGTPBP1   680000 perm   372 sec   (1827 perm/sec)   p_kst 2.639706e-03   p_cons 6.088235e-02   p_joint 1.882353e-03

Joint ci ratio: 1.067827e-01	ci left: 1.845164e-03	ci right 2.054705e-03	k: 1344	n:690000
Cons ci ratio: 1.854246e-02	ci left: 6.026758e-02	ci right 6.139698e-02	k: 41973	n:690000
KS ci ratio: 9.161360e-02	ci left: 2.525108e-03	ci right 2.768952e-03	k: 1825	n:690000
AGTPBP1   690000 perm   381 sec   (1812 perm/sec)   p_kst 2.644928e-03   p_cons 6.083043e-02   p_joint 1.947826e-03

Joint ci ratio: 1.058035e-01	ci left: 1.853569e-03	ci right 2.062015e-03	k: 1369	n:700000
Cons ci ratio: 1.840685e-02	ci left: 6.028825e-02	ci right 6.140968e-02	k: 42593	n:700000
KS ci ratio: 9.084541e-02	ci left: 2.532311e-03	ci right 2.774691e-03	k: 1856	n:700000
AGTPBP1   700000 perm   389 sec   (1798 perm/sec)   p_kst 2.651429e-03   p_cons 6.084714e-02   p_joint 1.955714e-03

Joint ci ratio: 1.011407e-01	ci left: 2.004461e-03	ci right 2.219352e-03	k: 1498	n:710000
Cons ci ratio: 1.827124e-02	ci left: 6.032659e-02	ci right 6.144038e-02	k: 43226	n:710000
KS ci ratio: 9.014411e-02	ci left: 2.536566e-03	ci right 2.777380e-03	k: 1885	n:710000
AGTPBP1   710000 perm   398 sec   (1784 perm/sec)   p_kst 2.654930e-03   p_cons 6.088169e-02   p_joint 2.109859e-03

Joint ci ratio: 9.835413e-02	ci left: 2.093091e-03	ci right 2.310945e-03	k: 1584	n:720000
Cons ci ratio: 1.814410e-02	ci left: 6.032932e-02	ci right 6.143533e-02	k: 43834	n:720000
KS ci ratio: 8.938862e-02	ci left: 2.544783e-03	ci right 2.784247e-03	k: 1917	n:720000
AGTPBP1   720000 perm   407 sec   (1770 perm/sec)   p_kst 2.662500e-03   p_cons 6.088056e-02   p_joint 2.200000e-03

Outputting figure to mutsig2_images.part000000000005/AGTPBP1.3_3661_720000_0.0026625_0.060881_0.0022.png
                gene_name: AGTPBP1
               theta_stop: 0.098 
                    nperm: 720000 
                     p_ks: 0.0027 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0023 

Current progress: 69 percent done.
AGXT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
Cons ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
KS ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
AGXT   10000 perm   2 sec   (6144 perm/sec)   p_kst 3.939000e-01   p_cons 7.940000e-02   p_joint 1.571000e-01

Joint ci ratio: 4.512488e-02	ci left: 2.677277e-01	ci right 2.801381e-01	k: 5478	n:20000
Cons ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
KS ci ratio: 3.469175e-02	ci left: 3.828330e-01	ci right 3.963991e-01	k: 7792	n:20000
AGXT   20000 perm   4 sec   (5263 perm/sec)   p_kst 3.896000e-01   p_cons 8.070000e-02   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000005/AGXT.3_1223_20000_0.3896_0.0807_0.2739.png
                gene_name: AGXT
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 71 percent done.
AHCYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
KS ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
AHCYL1   10000 perm   2 sec   (6222 perm/sec)   p_kst 7.989000e-01   p_cons 5.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AHCYL1.3_1661_10000_0.7989_0.5813_1.png
                gene_name: AHCYL1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
AIMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
Cons ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
KS ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
AIMP1   10000 perm   2 sec   (6494 perm/sec)   p_kst 1.945000e-01   p_cons 2.066000e-01   p_joint 1.238000e-01

Joint ci ratio: 5.754901e-02	ci left: 1.828529e-01	ci right 1.937378e-01	k: 3765	n:20000
Cons ci ratio: 5.522086e-02	ci left: 1.956627e-01	ci right 2.068243e-01	k: 4024	n:20000
KS ci ratio: 5.647981e-02	ci left: 1.885890e-01	ci right 1.996001e-01	k: 3881	n:20000
AIMP1   20000 perm   4 sec   (5673 perm/sec)   p_kst 1.940500e-01   p_cons 2.012000e-01   p_joint 1.882500e-01

Outputting figure to mutsig2_images.part000000000005/AIMP1.3_1039_20000_0.19405_0.2012_0.18825.png
                gene_name: AIMP1
               theta_stop: 0.058 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 74 percent done.
AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
KS ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
AK2   10000 perm   2 sec   (6391 perm/sec)   p_kst 3.030000e-02   p_cons 4.100000e-03   p_joint 4.340000e-02

Joint ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
Cons ci ratio: 4.643804e-01	ci left: 2.729407e-03	ci right 4.420000e-03	k: 70	n:20000
KS ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
AK2   20000 perm   4 sec   (5568 perm/sec)   p_kst 2.965000e-02   p_cons 3.500000e-03   p_joint 1.145000e-02

Joint ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
Cons ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
KS ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
AK2   30000 perm   6 sec   (5326 perm/sec)   p_kst 3.033333e-02   p_cons 3.466667e-03   p_joint 3.600000e-03

Joint ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
Cons ci ratio: 3.393373e-01	ci left: 2.761793e-03	ci right 3.912178e-03	k: 132	n:40000
KS ci ratio: 1.105968e-01	ci left: 2.876350e-02	ci right 3.215512e-02	k: 1217	n:40000
AK2   40000 perm   8 sec   (5111 perm/sec)   p_kst 3.042500e-02   p_cons 3.300000e-03   p_joint 2.600000e-03

Joint ci ratio: 3.651176e-01	ci left: 1.881076e-03	ci right 2.738348e-03	k: 114	n:50000
Cons ci ratio: 3.094039e-01	ci left: 2.705539e-03	ci right 3.713506e-03	k: 159	n:50000
KS ci ratio: 9.964902e-02	ci left: 2.852210e-02	ci right 3.153279e-02	k: 1500	n:50000
AK2   50000 perm   10 sec   (4960 perm/sec)   p_kst 3.000000e-02   p_cons 3.180000e-03   p_joint 2.280000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 2.809819e-01	ci left: 2.779427e-03	ci right 3.702991e-03	k: 193	n:60000
KS ci ratio: 9.173628e-02	ci left: 2.817687e-02	ci right 3.090222e-02	k: 1771	n:60000
AK2   60000 perm   12 sec   (4834 perm/sec)   p_kst 2.951667e-02   p_cons 3.216667e-03   p_joint 1.316667e-03

Joint ci ratio: 3.229742e-01	ci left: 1.761396e-03	ci right 2.452347e-03	k: 146	n:70000
Cons ci ratio: 2.574893e-01	ci left: 2.875340e-03	ci right 3.738073e-03	k: 230	n:70000
KS ci ratio: 8.568889e-02	ci left: 2.778329e-02	ci right 3.028452e-02	k: 2031	n:70000
AK2   70000 perm   15 sec   (4723 perm/sec)   p_kst 2.901429e-02   p_cons 3.285714e-03   p_joint 2.085714e-03

Joint ci ratio: 2.093733e-01	ci left: 3.905765e-03	ci right 4.830746e-03	k: 348	n:80000
Cons ci ratio: 2.427112e-01	ci left: 2.855715e-03	ci right 3.655979e-03	k: 259	n:80000
KS ci ratio: 7.989438e-02	ci left: 2.804415e-02	ci right 3.039016e-02	k: 2336	n:80000
AK2   80000 perm   17 sec   (4610 perm/sec)   p_kst 2.920000e-02   p_cons 3.237500e-03   p_joint 4.350000e-03

Joint ci ratio: 2.714873e-01	ci left: 1.997622e-03	ci right 2.635134e-03	k: 207	n:90000
Cons ci ratio: 2.267020e-01	ci left: 2.935847e-03	ci right 3.696722e-03	k: 297	n:90000
KS ci ratio: 7.607549e-02	ci left: 2.756433e-02	ci right 2.975508e-02	k: 2578	n:90000
AK2   90000 perm   20 sec   (4526 perm/sec)   p_kst 2.864444e-02   p_cons 3.300000e-03   p_joint 2.300000e-03

Joint ci ratio: 2.501314e-01	ci left: 2.143730e-03	ci right 2.765691e-03	k: 244	n:100000
Cons ci ratio: 2.177610e-01	ci left: 2.878341e-03	ci right 3.590955e-03	k: 322	n:100000
KS ci ratio: 7.181829e-02	ci left: 2.789002e-02	ci right 2.997742e-02	k: 2892	n:100000
AK2   100000 perm   23 sec   (4438 perm/sec)   p_kst 2.892000e-02   p_cons 3.220000e-03   p_joint 2.440000e-03

Joint ci ratio: 2.456774e-01	ci left: 2.025565e-03	ci right 2.601178e-03	k: 253	n:110000
Cons ci ratio: 2.088991e-01	ci left: 2.857620e-03	ci right 3.532631e-03	k: 350	n:110000
KS ci ratio: 6.819304e-02	ci left: 2.816821e-02	ci right 3.016580e-02	k: 3207	n:110000
AK2   110000 perm   25 sec   (4351 perm/sec)   p_kst 2.915455e-02   p_cons 3.181818e-03   p_joint 2.300000e-03

Joint ci ratio: 2.260373e-01	ci left: 2.217511e-03	ci right 2.790287e-03	k: 299	n:120000
Cons ci ratio: 2.002443e-01	ci left: 2.864590e-03	ci right 3.509789e-03	k: 381	n:120000
KS ci ratio: 6.534411e-02	ci left: 2.816440e-02	ci right 3.007511e-02	k: 3493	n:120000
AK2   120000 perm   28 sec   (4270 perm/sec)   p_kst 2.910833e-02   p_cons 3.175000e-03   p_joint 2.491667e-03

Joint ci ratio: 2.098518e-01	ci left: 2.396058e-03	ci right 2.964948e-03	k: 347	n:130000
Cons ci ratio: 1.937634e-01	ci left: 2.834369e-03	ci right 3.449662e-03	k: 407	n:130000
KS ci ratio: 6.259491e-02	ci left: 2.836718e-02	ci right 3.020774e-02	k: 3806	n:130000
AK2   130000 perm   31 sec   (4182 perm/sec)   p_kst 2.927692e-02   p_cons 3.130769e-03   p_joint 2.669231e-03

Joint ci ratio: 1.720822e-01	ci left: 3.375033e-03	ci right 4.017221e-03	k: 516	n:140000
Cons ci ratio: 1.880910e-01	ci left: 2.801947e-03	ci right 3.390360e-03	k: 432	n:140000
KS ci ratio: 6.000842e-02	ci left: 2.869025e-02	ci right 3.047217e-02	k: 4140	n:140000
AK2   140000 perm   34 sec   (4102 perm/sec)   p_kst 2.957143e-02   p_cons 3.085714e-03   p_joint 3.685714e-03

Joint ci ratio: 2.008362e-01	ci left: 2.278938e-03	ci right 2.793925e-03	k: 379	n:150000
Cons ci ratio: 1.832910e-01	ci left: 2.761351e-03	ci right 3.324796e-03	k: 455	n:150000
KS ci ratio: 5.801264e-02	ci left: 2.868236e-02	ci right 3.040255e-02	k: 4430	n:150000
AK2   150000 perm   37 sec   (4028 perm/sec)   p_kst 2.953333e-02   p_cons 3.033333e-03   p_joint 2.526667e-03

Joint ci ratio: 1.606760e-01	ci left: 3.408401e-03	ci right 4.009803e-03	k: 592	n:160000
Cons ci ratio: 1.780962e-01	ci left: 2.749883e-03	ci right 3.293373e-03	k: 482	n:160000
KS ci ratio: 5.620360e-02	ci left: 2.867633e-02	ci right 3.034078e-02	k: 4720	n:160000
AK2   160000 perm   40 sec   (3955 perm/sec)   p_kst 2.950000e-02   p_cons 3.012500e-03   p_joint 3.700000e-03

Joint ci ratio: 1.803731e-01	ci left: 2.520677e-03	ci right 3.025929e-03	k: 470	n:170000
Cons ci ratio: 1.734901e-01	ci left: 2.734336e-03	ci right 3.259311e-03	k: 508	n:170000
KS ci ratio: 5.445878e-02	ci left: 2.877042e-02	ci right 3.038685e-02	k: 5027	n:170000
AK2   170000 perm   44 sec   (3882 perm/sec)   p_kst 2.957059e-02   p_cons 2.988235e-03   p_joint 2.764706e-03

Joint ci ratio: 1.740197e-01	ci left: 2.566467e-03	ci right 3.060873e-03	k: 505	n:180000
Cons ci ratio: 1.690655e-01	ci left: 2.725997e-03	ci right 3.234664e-03	k: 535	n:180000
KS ci ratio: 5.293859e-02	ci left: 2.877798e-02	ci right 3.034833e-02	k: 5320	n:180000
AK2   180000 perm   47 sec   (3817 perm/sec)   p_kst 2.955556e-02   p_cons 2.972222e-03   p_joint 2.805556e-03

Joint ci ratio: 1.700358e-01	ci left: 2.552265e-03	ci right 3.031526e-03	k: 529	n:190000
Cons ci ratio: 1.643783e-01	ci left: 2.738876e-03	ci right 3.234375e-03	k: 566	n:190000
KS ci ratio: 5.157214e-02	ci left: 2.874893e-02	ci right 3.027599e-02	k: 5606	n:190000
AK2   190000 perm   51 sec   (3756 perm/sec)   p_kst 2.950526e-02   p_cons 2.978947e-03   p_joint 2.784211e-03

Joint ci ratio: 1.977953e-01	ci left: 1.766162e-03	ci right 2.158498e-03	k: 391	n:200000
Cons ci ratio: 1.614199e-01	ci left: 2.702648e-03	ci right 3.181939e-03	k: 587	n:200000
KS ci ratio: 5.011821e-02	ci left: 2.893564e-02	ci right 3.042803e-02	k: 5935	n:200000
AK2   200000 perm   54 sec   (3695 perm/sec)   p_kst 2.967500e-02   p_cons 2.935000e-03   p_joint 1.955000e-03

Joint ci ratio: 1.931696e-01	ci left: 1.768108e-03	ci right 2.150611e-03	k: 410	n:210000
Cons ci ratio: 1.563155e-01	ci left: 2.752288e-03	ci right 3.223502e-03	k: 626	n:210000
KS ci ratio: 4.895410e-02	ci left: 2.890277e-02	ci right 3.035787e-02	k: 6221	n:210000
AK2   210000 perm   58 sec   (3637 perm/sec)   p_kst 2.962381e-02   p_cons 2.980952e-03   p_joint 1.952381e-03

Joint ci ratio: 1.899637e-01	ci left: 1.748322e-03	ci right 2.119543e-03	k: 424	n:220000
Cons ci ratio: 1.529385e-01	ci left: 2.749532e-03	ci right 3.209173e-03	k: 654	n:220000
KS ci ratio: 4.780321e-02	ci left: 2.894964e-02	ci right 3.037188e-02	k: 6524	n:220000
AK2   220000 perm   61 sec   (3582 perm/sec)   p_kst 2.965455e-02   p_cons 2.972727e-03   p_joint 1.927273e-03

Joint ci ratio: 1.686480e-01	ci left: 2.145827e-03	ci right 2.545141e-03	k: 538	n:230000
Cons ci ratio: 1.495520e-01	ci left: 2.755487e-03	ci right 3.205010e-03	k: 684	n:230000
KS ci ratio: 4.689645e-02	ci left: 2.879077e-02	ci right 3.017765e-02	k: 6780	n:230000
AK2   230000 perm   65 sec   (3527 perm/sec)   p_kst 2.947826e-02   p_cons 2.973913e-03   p_joint 2.339130e-03

Joint ci ratio: 1.650141e-01	ci left: 2.152243e-03	ci right 2.543264e-03	k: 562	n:240000
Cons ci ratio: 1.470008e-01	ci left: 2.736963e-03	ci right 3.175178e-03	k: 708	n:240000
KS ci ratio: 4.596875e-02	ci left: 2.873190e-02	ci right 3.008783e-02	k: 7057	n:240000
AK2   240000 perm   69 sec   (3471 perm/sec)   p_kst 2.940417e-02   p_cons 2.950000e-03   p_joint 2.341667e-03

Joint ci ratio: 1.526160e-01	ci left: 2.431099e-03	ci right 2.836569e-03	k: 657	n:250000
Cons ci ratio: 1.426372e-01	ci left: 2.797114e-03	ci right 3.230535e-03	k: 752	n:250000
KS ci ratio: 4.506236e-02	ci left: 2.871755e-02	ci right 3.004539e-02	k: 7344	n:250000
AK2   250000 perm   73 sec   (3419 perm/sec)   p_kst 2.937600e-02   p_cons 3.008000e-03   p_joint 2.628000e-03

Joint ci ratio: 1.363428e-01	ci left: 2.953099e-03	ci right 3.388861e-03	k: 823	n:260000
Cons ci ratio: 1.406003e-01	ci left: 2.771147e-03	ci right 3.193899e-03	k: 774	n:260000
KS ci ratio: 4.425238e-02	ci left: 2.864748e-02	ci right 2.994766e-02	k: 7616	n:260000
AK2   260000 perm   77 sec   (3368 perm/sec)   p_kst 2.929231e-02   p_cons 2.976923e-03   p_joint 3.165385e-03

Joint ci ratio: 1.475476e-01	ci left: 2.414990e-03	ci right 2.803217e-03	k: 703	n:270000
Cons ci ratio: 1.376130e-01	ci left: 2.790057e-03	ci right 3.205910e-03	k: 808	n:270000
KS ci ratio: 4.343354e-02	ci left: 2.864876e-02	ci right 2.992434e-02	k: 7906	n:270000
AK2   270000 perm   81 sec   (3322 perm/sec)   p_kst 2.928148e-02   p_cons 2.992593e-03   p_joint 2.603704e-03

Joint ci ratio: 1.455978e-01	ci left: 2.394107e-03	ci right 2.773449e-03	k: 722	n:280000
Cons ci ratio: 1.358631e-01	ci left: 2.762844e-03	ci right 3.168980e-03	k: 829	n:280000
KS ci ratio: 4.259968e-02	ci left: 2.872791e-02	ci right 2.998186e-02	k: 8218	n:280000
AK2   280000 perm   86 sec   (3272 perm/sec)   p_kst 2.935000e-02   p_cons 2.960714e-03   p_joint 2.578571e-03

Joint ci ratio: 1.457053e-01	ci left: 2.308221e-03	ci right 2.674248e-03	k: 721	n:290000
Cons ci ratio: 1.338632e-01	ci left: 2.750871e-03	ci right 3.148820e-03	k: 854	n:290000
KS ci ratio: 4.196436e-02	ci left: 2.859703e-02	ci right 2.982620e-02	k: 8470	n:290000
AK2   290000 perm   90 sec   (3226 perm/sec)   p_kst 2.920690e-02   p_cons 2.944828e-03   p_joint 2.486207e-03

Joint ci ratio: 1.421066e-01	ci left: 2.350177e-03	ci right 2.712873e-03	k: 758	n:300000
Cons ci ratio: 1.316493e-01	ci left: 2.752631e-03	ci right 3.143735e-03	k: 883	n:300000
KS ci ratio: 4.132734e-02	ci left: 2.851460e-02	ci right 2.972118e-02	k: 8734	n:300000
AK2   300000 perm   94 sec   (3183 perm/sec)   p_kst 2.911333e-02   p_cons 2.943333e-03   p_joint 2.526667e-03

Joint ci ratio: 1.402718e-01	ci left: 2.336601e-03	ci right 2.692156e-03	k: 778	n:310000
Cons ci ratio: 1.291874e-01	ci left: 2.769938e-03	ci right 3.155576e-03	k: 917	n:310000
KS ci ratio: 4.070449e-02	ci left: 2.845680e-02	ci right 2.964235e-02	k: 9004	n:310000
AK2   310000 perm   99 sec   (3143 perm/sec)   p_kst 2.904516e-02   p_cons 2.958065e-03   p_joint 2.509677e-03

Joint ci ratio: 1.345142e-01	ci left: 2.468792e-03	ci right 2.827810e-03	k: 846	n:320000
Cons ci ratio: 1.276682e-01	ci left: 2.749916e-03	ci right 3.127924e-03	k: 939	n:320000
KS ci ratio: 4.013126e-02	ci left: 2.837178e-02	ci right 2.953677e-02	k: 9264	n:320000
AK2   320000 perm   103 sec   (3101 perm/sec)   p_kst 2.895000e-02   p_cons 2.934375e-03   p_joint 2.643750e-03

Joint ci ratio: 1.315924e-01	ci left: 2.505302e-03	ci right 2.861097e-03	k: 884	n:330000
Cons ci ratio: 1.257433e-01	ci left: 2.751679e-03	ci right 3.123801e-03	k: 968	n:330000
KS ci ratio: 3.958157e-02	ci left: 2.829204e-02	ci right 2.943747e-02	k: 9524	n:330000
AK2   330000 perm   108 sec   (3062 perm/sec)   p_kst 2.886061e-02   p_cons 2.933333e-03   p_joint 2.678788e-03

Joint ci ratio: 1.298441e-01	ci left: 2.499896e-03	ci right 2.849843e-03	k: 908	n:340000
Cons ci ratio: 1.242155e-01	ci left: 2.739128e-03	ci right 3.104720e-03	k: 992	n:340000
KS ci ratio: 3.899032e-02	ci left: 2.830740e-02	ci right 2.943595e-02	k: 9815	n:340000
AK2   340000 perm   113 sec   (3022 perm/sec)   p_kst 2.886765e-02   p_cons 2.917647e-03   p_joint 2.670588e-03

Joint ci ratio: 1.283708e-01	ci left: 2.486531e-03	ci right 2.830357e-03	k: 929	n:350000
Cons ci ratio: 1.223804e-01	ci left: 2.743938e-03	ci right 3.104370e-03	k: 1022	n:350000
KS ci ratio: 3.842870e-02	ci left: 2.831634e-02	ci right 2.942863e-02	k: 10104	n:350000
AK2   350000 perm   117 sec   (2984 perm/sec)   p_kst 2.886857e-02   p_cons 2.920000e-03   p_joint 2.654286e-03

Joint ci ratio: 1.295683e-01	ci left: 2.371753e-03	ci right 2.703002e-03	k: 912	n:360000
Cons ci ratio: 1.210866e-01	ci left: 2.726966e-03	ci right 3.081111e-03	k: 1044	n:360000
KS ci ratio: 3.785693e-02	ci left: 2.837443e-02	ci right 2.947206e-02	k: 10411	n:360000
AK2   360000 perm   122 sec   (2947 perm/sec)   p_kst 2.891944e-02   p_cons 2.900000e-03   p_joint 2.533333e-03

Joint ci ratio: 1.275576e-01	ci left: 2.383510e-03	ci right 2.710845e-03	k: 941	n:370000
Cons ci ratio: 1.190522e-01	ci left: 2.747641e-03	ci right 3.098053e-03	k: 1080	n:370000
KS ci ratio: 3.735843e-02	ci left: 2.835719e-02	ci right 2.943939e-02	k: 10691	n:370000
AK2   370000 perm   127 sec   (2911 perm/sec)   p_kst 2.889459e-02   p_cons 2.918919e-03   p_joint 2.543243e-03

Joint ci ratio: 1.255730e-01	ci left: 2.397235e-03	ci right 2.720951e-03	k: 971	n:380000
Cons ci ratio: 1.172750e-01	ci left: 2.759611e-03	ci right 3.105932e-03	k: 1113	n:380000
KS ci ratio: 3.683592e-02	ci left: 2.840615e-02	ci right 2.947474e-02	k: 10996	n:380000
AK2   380000 perm   132 sec   (2876 perm/sec)   p_kst 2.893684e-02   p_cons 2.928947e-03   p_joint 2.555263e-03

Joint ci ratio: 1.243016e-01	ci left: 2.385446e-03	ci right 2.704068e-03	k: 991	n:390000
Cons ci ratio: 1.155751e-01	ci left: 2.771004e-03	ci right 3.113370e-03	k: 1146	n:390000
KS ci ratio: 3.637288e-02	ci left: 2.839424e-02	ci right 2.944867e-02	k: 11278	n:390000
AK2   390000 perm   137 sec   (2841 perm/sec)   p_kst 2.891795e-02   p_cons 2.938462e-03   p_joint 2.541026e-03

Joint ci ratio: 1.298702e-01	ci left: 2.124885e-03	ci right 2.422399e-03	k: 908	n:400000
Cons ci ratio: 1.142875e-01	ci left: 2.764860e-03	ci right 3.102405e-03	k: 1172	n:400000
KS ci ratio: 3.591726e-02	ci left: 2.839788e-02	ci right 2.943896e-02	k: 11566	n:400000
AK2   400000 perm   142 sec   (2808 perm/sec)   p_kst 2.891500e-02   p_cons 2.930000e-03   p_joint 2.270000e-03

Joint ci ratio: 1.281888e-01	ci left: 2.129706e-03	ci right 2.423741e-03	k: 932	n:410000
Cons ci ratio: 1.132792e-01	ci left: 2.747184e-03	ci right 3.079415e-03	k: 1193	n:410000
KS ci ratio: 3.547528e-02	ci left: 2.840625e-02	ci right 2.943457e-02	k: 11856	n:410000
AK2   410000 perm   148 sec   (2775 perm/sec)   p_kst 2.891707e-02   p_cons 2.909756e-03   p_joint 2.273171e-03

Joint ci ratio: 1.290968e-01	ci left: 2.049036e-03	ci right 2.334091e-03	k: 919	n:420000
Cons ci ratio: 1.119281e-01	ci left: 2.748878e-03	ci right 3.077087e-03	k: 1222	n:420000
KS ci ratio: 3.507301e-02	ci left: 2.837653e-02	ci right 2.939189e-02	k: 12130	n:420000
AK2   420000 perm   153 sec   (2743 perm/sec)   p_kst 2.888095e-02   p_cons 2.909524e-03   p_joint 2.188095e-03

Joint ci ratio: 1.277845e-01	ci left: 2.044150e-03	ci right 2.325416e-03	k: 938	n:430000
Cons ci ratio: 1.105799e-01	ci left: 2.752777e-03	ci right 3.077234e-03	k: 1252	n:430000
KS ci ratio: 3.465536e-02	ci left: 2.839438e-02	ci right 2.939803e-02	k: 12424	n:430000
AK2   430000 perm   159 sec   (2712 perm/sec)   p_kst 2.889302e-02   p_cons 2.911628e-03   p_joint 2.181395e-03

Joint ci ratio: 1.260507e-01	ci left: 2.054908e-03	ci right 2.333530e-03	k: 964	n:440000
Cons ci ratio: 1.091514e-01	ci left: 2.763154e-03	ci right 3.084356e-03	k: 1285	n:440000
KS ci ratio: 3.426894e-02	ci left: 2.838443e-02	ci right 2.937633e-02	k: 12706	n:440000
AK2   440000 perm   164 sec   (2681 perm/sec)   p_kst 2.887727e-02   p_cons 2.920455e-03   p_joint 2.190909e-03

Joint ci ratio: 1.251472e-01	ci left: 2.039376e-03	ci right 2.313764e-03	k: 978	n:450000
Cons ci ratio: 1.081062e-01	ci left: 2.755796e-03	ci right 3.072880e-03	k: 1310	n:450000
KS ci ratio: 3.391264e-02	ci left: 2.834634e-02	ci right 2.932641e-02	k: 12975	n:450000
AK2   450000 perm   170 sec   (2651 perm/sec)   p_kst 2.883333e-02   p_cons 2.911111e-03   p_joint 2.173333e-03

Joint ci ratio: 1.234557e-01	ci left: 2.051913e-03	ci right 2.323983e-03	k: 1005	n:460000
Cons ci ratio: 1.072516e-01	ci left: 2.740309e-03	ci right 3.052961e-03	k: 1331	n:460000
KS ci ratio: 3.350736e-02	ci left: 2.840914e-02	ci right 2.937941e-02	k: 13290	n:460000
AK2   460000 perm   175 sec   (2622 perm/sec)   p_kst 2.889130e-02   p_cons 2.893478e-03   p_joint 2.184783e-03

Joint ci ratio: 1.173608e-01	ci left: 2.229074e-03	ci right 2.509032e-03	k: 1112	n:470000
Cons ci ratio: 1.061419e-01	ci left: 2.739989e-03	ci right 3.049168e-03	k: 1359	n:470000
KS ci ratio: 3.316148e-02	ci left: 2.839336e-02	ci right 2.935289e-02	k: 13569	n:470000
AK2   470000 perm   181 sec   (2593 perm/sec)   p_kst 2.887021e-02   p_cons 2.891489e-03   p_joint 2.365957e-03

Joint ci ratio: 1.149062e-01	ci left: 2.279734e-03	ci right 2.559660e-03	k: 1160	n:480000
Cons ci ratio: 1.054093e-01	ci left: 2.721441e-03	ci right 3.026276e-03	k: 1378	n:480000
KS ci ratio: 3.282487e-02	ci left: 2.838034e-02	ci right 2.932952e-02	k: 13849	n:480000
AK2   480000 perm   187 sec   (2566 perm/sec)   p_kst 2.885208e-02   p_cons 2.870833e-03   p_joint 2.416667e-03

Joint ci ratio: 1.132587e-01	ci left: 2.300618e-03	ci right 2.578787e-03	k: 1194	n:490000
Cons ci ratio: 1.038751e-01	ci left: 2.747387e-03	ci right 3.050375e-03	k: 1419	n:490000
KS ci ratio: 3.244750e-02	ci left: 2.845498e-02	ci right 2.939550e-02	k: 14172	n:490000
AK2   490000 perm   193 sec   (2539 perm/sec)   p_kst 2.892245e-02   p_cons 2.895918e-03   p_joint 2.436735e-03

Joint ci ratio: 1.120002e-01	ci left: 2.307084e-03	ci right 2.582732e-03	k: 1221	n:500000
Cons ci ratio: 1.029373e-01	ci left: 2.743094e-03	ci right 3.042713e-03	k: 1445	n:500000
KS ci ratio: 3.210681e-02	ci left: 2.848501e-02	ci right 2.941646e-02	k: 14474	n:500000
AK2   500000 perm   199 sec   (2511 perm/sec)   p_kst 2.894800e-02   p_cons 2.890000e-03   p_joint 2.442000e-03

Joint ci ratio: 1.107827e-01	ci left: 2.313314e-03	ci right 2.586505e-03	k: 1248	n:510000
Cons ci ratio: 1.017475e-01	ci left: 2.754268e-03	ci right 3.051423e-03	k: 1479	n:510000
KS ci ratio: 3.175782e-02	ci left: 2.854699e-02	ci right 2.947014e-02	k: 14793	n:510000
AK2   510000 perm   205 sec   (2484 perm/sec)   p_kst 2.900588e-02   p_cons 2.900000e-03   p_joint 2.447059e-03

Joint ci ratio: 1.095181e-01	ci left: 2.323061e-03	ci right 2.594069e-03	k: 1277	n:520000
Cons ci ratio: 1.005980e-01	ci left: 2.765033e-03	ci right 3.059780e-03	k: 1513	n:520000
KS ci ratio: 3.146503e-02	ci left: 2.852649e-02	ci right 2.944031e-02	k: 15070	n:520000
AK2   520000 perm   211 sec   (2459 perm/sec)   p_kst 2.898077e-02   p_cons 2.909615e-03   p_joint 2.455769e-03

Joint ci ratio: 1.074340e-01	ci left: 2.371012e-03	ci right 2.642019e-03	k: 1327	n:530000
Cons ci ratio: 9.994097e-02	ci left: 2.749651e-03	ci right 3.040731e-03	k: 1533	n:530000
KS ci ratio: 3.118437e-02	ci left: 2.849930e-02	ci right 2.940397e-02	k: 15343	n:530000
AK2   530000 perm   218 sec   (2435 perm/sec)   p_kst 2.894906e-02   p_cons 2.892453e-03   p_joint 2.503774e-03

Joint ci ratio: 1.062010e-01	ci left: 2.382979e-03	ci right 2.652032e-03	k: 1358	n:540000
Cons ci ratio: 9.910490e-02	ci left: 2.745681e-03	ci right 3.033768e-03	k: 1559	n:540000
KS ci ratio: 3.091007e-02	ci left: 2.847500e-02	ci right 2.937080e-02	k: 15617	n:540000
AK2   540000 perm   224 sec   (2410 perm/sec)   p_kst 2.892037e-02   p_cons 2.887037e-03   p_joint 2.514815e-03

Joint ci ratio: 1.053138e-01	ci left: 2.380364e-03	ci right 2.646737e-03	k: 1381	n:550000
Cons ci ratio: 9.813446e-02	ci left: 2.750733e-03	ci right 3.036361e-03	k: 1590	n:550000
KS ci ratio: 3.063197e-02	ci left: 2.847147e-02	ci right 2.935896e-02	k: 15902	n:550000
AK2   550000 perm   230 sec   (2386 perm/sec)   p_kst 2.891273e-02   p_cons 2.890909e-03   p_joint 2.510909e-03

Joint ci ratio: 1.047478e-01	ci left: 2.363939e-03	ci right 2.626965e-03	k: 1396	n:560000
Cons ci ratio: 9.752418e-02	ci left: 2.736452e-03	ci right 3.018730e-03	k: 1610	n:560000
KS ci ratio: 3.038831e-02	ci left: 2.841846e-02	ci right 2.929713e-02	k: 16159	n:560000
AK2   560000 perm   237 sec   (2363 perm/sec)   p_kst 2.885536e-02   p_cons 2.875000e-03   p_joint 2.492857e-03

Joint ci ratio: 1.038230e-01	ci left: 2.365182e-03	ci right 2.625881e-03	k: 1421	n:570000
Cons ci ratio: 9.665806e-02	ci left: 2.738086e-03	ci right 3.017882e-03	k: 1639	n:570000
KS ci ratio: 3.013526e-02	ci left: 2.839521e-02	ci right 2.926573e-02	k: 16432	n:570000
AK2   570000 perm   244 sec   (2340 perm/sec)   p_kst 2.882807e-02   p_cons 2.875439e-03   p_joint 2.492982e-03

Joint ci ratio: 1.043043e-01	ci left: 2.302569e-03	ci right 2.557614e-03	k: 1408	n:580000
Cons ci ratio: 9.592997e-02	ci left: 2.732943e-03	ci right 3.009991e-03	k: 1664	n:580000
KS ci ratio: 2.990317e-02	ci left: 2.834541e-02	ci right 2.920759e-02	k: 16689	n:580000
AK2   580000 perm   250 sec   (2317 perm/sec)   p_kst 2.877414e-02   p_cons 2.868966e-03   p_joint 2.427586e-03

Joint ci ratio: 1.024288e-01	ci left: 2.349402e-03	ci right 2.604675e-03	k: 1460	n:590000
Cons ci ratio: 9.493682e-02	ci left: 2.744529e-03	ci right 3.019711e-03	k: 1699	n:590000
KS ci ratio: 2.964846e-02	ci left: 2.834948e-02	ci right 2.920431e-02	k: 16977	n:590000
AK2   590000 perm   257 sec   (2295 perm/sec)   p_kst 2.877458e-02   p_cons 2.879661e-03   p_joint 2.474576e-03

Joint ci ratio: 1.014609e-01	ci left: 2.355723e-03	ci right 2.609119e-03	k: 1488	n:600000
Cons ci ratio: 9.427407e-02	ci left: 2.737840e-03	ci right 3.010329e-03	k: 1723	n:600000
KS ci ratio: 2.940540e-02	ci left: 2.834351e-02	ci right 2.919104e-02	k: 17259	n:600000
AK2   600000 perm   264 sec   (2273 perm/sec)   p_kst 2.876500e-02   p_cons 2.871667e-03   p_joint 2.480000e-03

Joint ci ratio: 1.020139e-01	ci left: 2.291538e-03	ci right 2.539455e-03	k: 1472	n:610000
Cons ci ratio: 9.359816e-02	ci left: 2.732978e-03	ci right 3.002926e-03	k: 1748	n:610000
KS ci ratio: 2.915454e-02	ci left: 2.836382e-02	ci right 2.920460e-02	k: 17557	n:610000
AK2   610000 perm   271 sec   (2252 perm/sec)   p_kst 2.878197e-02   p_cons 2.865574e-03   p_joint 2.413115e-03

Joint ci ratio: 1.010239e-01	ci left: 2.300165e-03	ci right 2.546457e-03	k: 1501	n:620000
Cons ci ratio: 9.257097e-02	ci left: 2.750337e-03	ci right 3.018857e-03	k: 1787	n:620000
KS ci ratio: 2.892083e-02	ci left: 2.836268e-02	ci right 2.919657e-02	k: 17842	n:620000
AK2   620000 perm   278 sec   (2231 perm/sec)   p_kst 2.877742e-02   p_cons 2.882258e-03   p_joint 2.420968e-03

Joint ci ratio: 1.002593e-01	ci left: 2.299243e-03	ci right 2.543463e-03	k: 1524	n:630000
Cons ci ratio: 9.190538e-02	ci left: 2.746999e-03	ci right 3.013161e-03	k: 1813	n:630000
KS ci ratio: 2.868859e-02	ci left: 2.836948e-02	ci right 2.919677e-02	k: 18132	n:630000
AK2   630000 perm   285 sec   (2209 perm/sec)   p_kst 2.878095e-02   p_cons 2.877778e-03   p_joint 2.419048e-03

Joint ci ratio: 9.967325e-02	ci left: 2.290739e-03	ci right 2.532550e-03	k: 1542	n:640000
Cons ci ratio: 9.125394e-02	ci left: 2.743771e-03	ci right 3.007636e-03	k: 1839	n:640000
KS ci ratio: 2.844278e-02	ci left: 2.841334e-02	ci right 2.923469e-02	k: 18446	n:640000
AK2   640000 perm   293 sec   (2188 perm/sec)   p_kst 2.882188e-02   p_cons 2.873438e-03   p_joint 2.409375e-03

Outputting figure to mutsig2_images.part000000000005/AK2.3_753_640000_0.028822_0.0028734_0.0024094.png
                gene_name: AK2
               theta_stop: 0.100 
                    nperm: 640000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.0029 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0030 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 76 percent done.
AGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
AGAP5   10000 perm   2 sec   (6116 perm/sec)   p_kst 9.852000e-01   p_cons 5.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGAP5.2_2093_10000_0.9852_0.569_1.png
                gene_name: AGAP5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
AGAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
Cons ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
KS ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
AGAP8   10000 perm   2 sec   (6469 perm/sec)   p_kst 3.520000e-02   p_cons 1.050000e-01   p_joint 5.991000e-01

Joint ci ratio: 2.102770e-02	ci left: 6.279825e-01	ci right 6.413783e-01	k: 12694	n:20000
Cons ci ratio: 8.199738e-02	ci left: 9.832948e-02	ci right 1.067865e-01	k: 2050	n:20000
KS ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
AGAP8   20000 perm   4 sec   (5598 perm/sec)   p_kst 3.460000e-02   p_cons 1.025000e-01   p_joint 6.347000e-01

Joint ci ratio: 1.724714e-02	ci left: 6.271154e-01	ci right 6.380589e-01	k: 18978	n:30000
Cons ci ratio: 6.728660e-02	ci left: 9.820326e-02	ci right 1.050741e-01	k: 3048	n:30000
KS ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
AGAP8   30000 perm   6 sec   (5294 perm/sec)   p_kst 3.570000e-02   p_cons 1.016000e-01   p_joint 6.326000e-01

Joint ci ratio: 1.860719e-02	ci left: 5.210425e-01	ci right 5.308538e-01	k: 21038	n:40000
Cons ci ratio: 5.812367e-02	ci left: 9.912459e-02	ci right 1.050833e-01	k: 4083	n:40000
KS ci ratio: 1.021617e-01	ci left: 3.368355e-02	ci right 3.733429e-02	k: 1419	n:40000
AGAP8   40000 perm   8 sec   (5100 perm/sec)   p_kst 3.547500e-02   p_cons 1.020750e-01   p_joint 5.259500e-01

Joint ci ratio: 4.371476e-02	ci left: 1.355031e-01	ci right 1.415789e-01	k: 6926	n:50000
Cons ci ratio: 5.208982e-02	ci left: 9.908362e-02	ci right 1.044027e-01	k: 5086	n:50000
KS ci ratio: 9.188750e-02	ci left: 3.350395e-02	ci right 3.675031e-02	k: 1755	n:50000
AGAP8   50000 perm   10 sec   (4915 perm/sec)   p_kst 3.510000e-02   p_cons 1.017200e-01   p_joint 1.385200e-01

Outputting figure to mutsig2_images.part000000000005/AGAP8.2_2020_50000_0.0351_0.10172_0.13852.png
                gene_name: AGAP8
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 79 percent done.
AGBL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
AGBL4   10000 perm   2 sec   (6373 perm/sec)   p_kst 7.297000e-01   p_cons 1.737000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGBL4.2_1568_10000_0.7297_0.1737_1.png
                gene_name: AGBL4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
AGER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
Cons ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
AGER   10000 perm   2 sec   (6363 perm/sec)   p_kst 2.869000e-01   p_cons 3.890000e-01   p_joint 2.950000e-01

Outputting figure to mutsig2_images.part000000000005/AGER.2_1288_10000_0.2869_0.389_0.295.png
                gene_name: AGER
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 82 percent done.
AGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
Cons ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
KS ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
AGK   10000 perm   1 sec   (6980 perm/sec)   p_kst 1.215000e-01   p_cons 6.620000e-01   p_joint 4.881000e-01

Joint ci ratio: 2.221595e-02	ci left: 6.020463e-01	ci right 6.156221e-01	k: 12177	n:20000
Cons ci ratio: 2.070464e-02	ci left: 6.351600e-01	ci right 6.484988e-01	k: 12837	n:20000
KS ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
AGK   20000 perm   3 sec   (6019 perm/sec)   p_kst 1.250000e-01   p_cons 6.418500e-01   p_joint 6.088500e-01

Outputting figure to mutsig2_images.part000000000005/AGK.2_1329_20000_0.125_0.64185_0.60885.png
                gene_name: AGK
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
AGPAT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242749e-03	ci left: 9.914989e-01	ci right 9.948039e-01	k: 9933	n:10000
Cons ci ratio: 2.070356e-02	ci left: 7.736747e-01	ci right 7.899608e-01	k: 7819	n:10000
KS ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
AGPAT9   10000 perm   2 sec   (6560 perm/sec)   p_kst 7.491000e-01   p_cons 7.819000e-01   p_joint 9.933000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT9.2_1353_10000_0.7491_0.7819_0.9933.png
                gene_name: AGPAT9
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
AGPHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
Cons ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
KS ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
AGPHD1   10000 perm   2 sec   (6591 perm/sec)   p_kst 6.665000e-01   p_cons 9.279000e-01   p_joint 9.806000e-01

Outputting figure to mutsig2_images.part000000000005/AGPHD1.2_1143_10000_0.6665_0.9279_0.9806.png
                gene_name: AGPHD1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
AGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
AGT   10000 perm   2 sec   (6497 perm/sec)   p_kst 3.709000e-01   p_cons 2.828000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000005/AGT.2_1474_10000_0.3709_0.2828_0.3885.png
                gene_name: AGT
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 89 percent done.
AGTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
KS ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
AGTR2   10000 perm   2 sec   (6598 perm/sec)   p_kst 6.933000e-01   p_cons 4.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGTR2.2_1096_10000_0.6933_0.4031_1.png
                gene_name: AGTR2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
AHCY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
KS ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
AHCY   10000 perm   1 sec   (6979 perm/sec)   p_kst 6.730000e-02   p_cons 2.084000e-01   p_joint 8.100000e-02

Joint ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
Cons ci ratio: 5.411213e-02	ci left: 2.021947e-01	ci right 2.134903e-01	k: 4156	n:20000
KS ci ratio: 1.041021e-01	ci left: 6.274367e-02	ci right 6.968309e-02	k: 1323	n:20000
AHCY   20000 perm   3 sec   (6001 perm/sec)   p_kst 6.615000e-02   p_cons 2.078000e-01   p_joint 1.162500e-01

Joint ci ratio: 4.561578e-02	ci left: 1.930078e-01	ci right 2.020509e-01	k: 5925	n:30000
Cons ci ratio: 4.405103e-02	ci left: 2.042124e-01	ci right 2.134441e-01	k: 6264	n:30000
KS ci ratio: 8.645384e-02	ci left: 6.135404e-02	ci right 6.693073e-02	k: 1923	n:30000
AHCY   30000 perm   5 sec   (5623 perm/sec)   p_kst 6.410000e-02   p_cons 2.088000e-01   p_joint 1.975000e-01

Outputting figure to mutsig2_images.part000000000005/AHCY.2_1339_30000_0.0641_0.2088_0.1975.png
                gene_name: AHCY
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
AHCYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
Cons ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
KS ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
AHCYL2   10000 perm   2 sec   (5999 perm/sec)   p_kst 1.712000e-01   p_cons 1.055000e-01   p_joint 2.102000e-01

Joint ci ratio: 4.972044e-02	ci left: 2.311697e-01	ci right 2.430069e-01	k: 4741	n:20000
Cons ci ratio: 6.519175e-02	ci left: 1.480859e-01	ci right 1.581151e-01	k: 3061	n:20000
KS ci ratio: 6.105161e-02	ci left: 1.656569e-01	ci right 1.761390e-01	k: 3417	n:20000
AHCYL2   20000 perm   4 sec   (5259 perm/sec)   p_kst 1.708500e-01   p_cons 1.530500e-01   p_joint 2.370500e-01

Outputting figure to mutsig2_images.part000000000005/AHCYL2.2_2026_20000_0.17085_0.15305_0.23705.png
                gene_name: AHCYL2
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 94 percent done.
AHSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
Cons ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
AHSP   10000 perm   1 sec   (7318 perm/sec)   p_kst 3.918000e-01   p_cons 5.716000e-01   p_joint 4.481000e-01

Outputting figure to mutsig2_images.part000000000005/AHSP.2_317_10000_0.3918_0.5716_0.4481.png
                gene_name: AHSP
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 95 percent done.
AIFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
Cons ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
KS ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
AIFM2   10000 perm   1 sec   (6734 perm/sec)   p_kst 2.046000e-01   p_cons 4.223000e-01   p_joint 3.318000e-01

Outputting figure to mutsig2_images.part000000000005/AIFM2.2_1154_10000_0.2046_0.4223_0.3318.png
                gene_name: AIFM2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 97 percent done.
AIMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
AIMP2   10000 perm   1 sec   (6896 perm/sec)   p_kst 9.249000e-01   p_cons 5.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIMP2.2_979_10000_0.9249_0.5689_1.png
                gene_name: AIMP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
AIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
KS ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
AIPL1   10000 perm   1 sec   (6725 perm/sec)   p_kst 5.981000e-01   p_cons 7.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIPL1.2_1179_10000_0.5981_0.7211_1.png
                gene_name: AIPL1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000005
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 5 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1430>
Subject: Job 4421679: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1430>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000006> was used as the working directory.
Started at Wed Oct 24 17:29:46 2012
Results reported at Wed Oct 24 17:50:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000006.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000006.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 6  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000006.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1420.82 sec.
    Max Memory :      5356 MB
    Max Swap   :      7687 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
6
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 6
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 6: processing genes 453 - 543
Calculating significance of each gene.
Using projection method.
453	AKAP5	1
454	AKAP6	9.825277e-01
455	AKAP7	8.152825e-01
456	AKAP8	1
457	AKAP8L	1
458	AKAP9	9.765738e-01
459	AKD1	9.885434e-01
460	AKIRIN1	1
461	AKIRIN2	1
462	AKNA	9.994191e-01
463	AKNAD1	4.789981e-01
464	AKR1A1	1
465	AKR1B1	5.297714e-01
466	AKR1B10	7.889635e-04
467	AKR1B15	1.635453e-02
468	AKR1C1	2.870196e-01
469	AKR1C2	3.477201e-01
470	AKR1C3	4.293414e-01
471	AKR1C4	8.134522e-01
472	AKR1D1	3.511870e-01
473	AKR1E2	6.913402e-01
474	AKR7A2	4.119181e-01
475	AKR7A3	1.927046e-01
476	AKR7L	1
477	AKT1	1
478	AKT1S1	1
479	AKT2	7.499931e-01
480	AKT3	1.608929e-01
481	AKTIP	8.399858e-01
482	ALAD	7.149777e-01
483	ALAS1	9.156472e-01
484	ALAS2	1
485	ALB	6.569715e-01
486	ALCAM	9.074576e-01
487	ALDH16A1	8.461258e-01
488	ALDH18A1	9.787815e-01
489	ALDH1A1	5.034733e-01
490	ALDH1A2	1.169413e-01
491	ALDH1A3	1
492	ALDH1B1	1.592880e-02
493	ALDH1L1	9.969208e-01
494	ALDH1L2	8.406520e-01
495	ALDH2	6.764032e-01
496	ALDH3A1	7.270362e-01
497	ALDH3A2	7.532925e-01
498	ALDH3B1	1
499	ALDH3B2	3.842114e-01
500	ALDH4A1	5.293864e-01
501	ALDH5A1	6.087216e-01
502	ALDH6A1	1
503	ALDH7A1	8.733652e-01
504	ALDH8A1	8.063555e-02
505	ALDH9A1	9.348203e-01
506	ALDOA	5.267403e-01
507	ALDOB	1.105240e-01
508	ALDOC	8.983143e-01
509	ALG1	1
510	ALG10	2.437229e-01
511	ALG10B	1.732495e-01
512	ALG11	1
513	ALG12	7.642241e-01
514	ALG13	1.398810e-01
515	ALG14	4.295334e-01
516	ALG1L	5.791011e-01
517	ALG1L2	1
518	ALG2	2.070506e-01
519	ALG3	2.271471e-01
520	ALG5	1
521	ALG6	1
522	ALG8	1
523	ALG9	5.251039e-01
524	ALK	1
525	ALKBH1	7.475183e-01
526	ALKBH2	1
527	ALKBH3	7.955683e-01
528	ALKBH4	5.034578e-01
529	ALKBH5	7.741341e-01
530	ALKBH6	1.511079e-01
531	ALKBH7	1
532	ALKBH8	6.469182e-01
533	ALLC	2.794344e-02
534	ALMS1	9.980647e-01
535	ALOX12	6.375504e-01
536	ALOX12B	9.792423e-01
537	ALOX15	6.150547e-01
538	ALOX15B	8.877752e-01
539	ALOX5	6.379585e-01
540	ALOX5AP	1
541	ALOXE3	9.040263e-01
542	ALPI	5.019607e-01
543	ALPK1	9.974373e-01
Done

Running MutSig 2:
Scatter job 6: processing genes 453 - 543
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ALMS1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
Cons ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
KS ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
ALMS1   10000 perm   5 sec   (2066 perm/sec)   p_kst 5.567000e-01   p_cons 2.066000e-01   p_joint 4.147000e-01

Outputting figure to mutsig2_images.part000000000006/ALMS1.28_12596_10000_0.5567_0.2066_0.4147.png
                gene_name: ALMS1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
AKAP9
Processing conservation and coverage...
83% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
Cons ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
KS ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
AKAP9   10000 perm   4 sec   (2262 perm/sec)   p_kst 7.923000e-01   p_cons 9.271000e-01   p_joint 8.909000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP9.23_11924_10000_0.7923_0.9271_0.8909.png
                gene_name: AKAP9
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 3 percent done.
ALK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
ALK   10000 perm   3 sec   (3340 perm/sec)   p_kst 1.410000e-02   p_cons 9.744000e-01   p_joint 5.930000e-02

Joint ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
Cons ci ratio: 4.585960e-03	ci left: 9.710749e-01	ci right 9.755860e-01	k: 19468	n:20000
KS ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
ALK   20000 perm   6 sec   (3117 perm/sec)   p_kst 1.350000e-02   p_cons 9.734000e-01   p_joint 6.125000e-02

Joint ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
Cons ci ratio: 3.306348e-03	ci left: 9.774520e-01	ci right 9.807209e-01	k: 29374	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
ALK   30000 perm   10 sec   (3029 perm/sec)   p_kst 1.370000e-02   p_cons 9.791333e-01   p_joint 3.166667e-02

Joint ci ratio: 8.532126e-02	ci left: 4.798238e-02	ci right 5.228323e-02	k: 2004	n:40000
Cons ci ratio: 3.250774e-03	ci left: 9.716215e-01	ci right 9.748093e-01	k: 38930	n:40000
KS ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
ALK   40000 perm   13 sec   (2964 perm/sec)   p_kst 1.327500e-02   p_cons 9.732500e-01   p_joint 5.010000e-02

Joint ci ratio: 7.990769e-02	ci left: 4.408212e-02	ci right 4.777083e-02	k: 2295	n:50000
Cons ci ratio: 2.883257e-03	ci left: 9.722390e-01	ci right 9.750656e-01	k: 48684	n:50000
KS ci ratio: 1.476556e-01	ci left: 1.287283e-02	ci right 1.494417e-02	k: 694	n:50000
ALK   50000 perm   17 sec   (2913 perm/sec)   p_kst 1.388000e-02   p_cons 9.736800e-01   p_joint 4.590000e-02

Joint ci ratio: 7.660493e-02	ci left: 4.021250e-02	ci right 4.343200e-02	k: 2508	n:60000
Cons ci ratio: 2.611982e-03	ci left: 9.727634e-01	ci right 9.753238e-01	k: 58444	n:60000
KS ci ratio: 1.352023e-01	ci left: 1.288178e-02	ci right 1.476568e-02	k: 828	n:60000
ALK   60000 perm   21 sec   (2864 perm/sec)   p_kst 1.380000e-02   p_cons 9.740667e-01   p_joint 4.180000e-02

Joint ci ratio: 7.428607e-02	ci left: 3.683417e-02	ci right 3.968999e-02	k: 2677	n:70000
Cons ci ratio: 2.403508e-03	ci left: 9.731738e-01	ci right 9.755295e-01	k: 68206	n:70000
KS ci ratio: 1.244037e-01	ci left: 1.311499e-02	ci right 1.486850e-02	k: 978	n:70000
ALK   70000 perm   25 sec   (2825 perm/sec)   p_kst 1.397143e-02   p_cons 9.743714e-01   p_joint 3.824286e-02

Joint ci ratio: 6.576278e-02	ci left: 4.112480e-02	ci right 4.393350e-02	k: 3401	n:80000
Cons ci ratio: 2.096035e-03	ci left: 9.766019e-01	ci right 9.786632e-01	k: 78212	n:80000
KS ci ratio: 1.167857e-01	ci left: 1.307585e-02	ci right 1.470968e-02	k: 1110	n:80000
ALK   80000 perm   29 sec   (2778 perm/sec)   p_kst 1.387500e-02   p_cons 9.776500e-01   p_joint 4.251250e-02

Joint ci ratio: 6.230203e-02	ci left: 4.081913e-02	ci right 4.345493e-02	k: 3791	n:90000
Cons ci ratio: 1.977862e-03	ci left: 9.766235e-01	ci right 9.785678e-01	k: 87985	n:90000
KS ci ratio: 1.100565e-01	ci left: 1.313445e-02	ci right 1.467489e-02	k: 1250	n:90000
ALK   90000 perm   33 sec   (2741 perm/sec)   p_kst 1.388889e-02   p_cons 9.776111e-01   p_joint 4.212222e-02

Joint ci ratio: 6.422959e-02	ci left: 3.475541e-02	ci right 3.707161e-02	k: 3590	n:100000
Cons ci ratio: 1.867353e-03	ci left: 9.768883e-01	ci right 9.787239e-01	k: 97782	n:100000
KS ci ratio: 1.048302e-01	ci left: 1.306659e-02	ci right 1.452181e-02	k: 1378	n:100000
ALK   100000 perm   37 sec   (2704 perm/sec)   p_kst 1.378000e-02   p_cons 9.778200e-01   p_joint 3.590000e-02

Joint ci ratio: 6.008333e-02	ci left: 3.613408e-02	ci right 3.838131e-02	k: 4097	n:110000
Cons ci ratio: 1.780120e-03	ci left: 9.769399e-01	ci right 9.786893e-01	k: 107561	n:110000
KS ci ratio: 9.964910e-02	ci left: 1.318096e-02	ci right 1.457212e-02	k: 1525	n:110000
ALK   110000 perm   41 sec   (2669 perm/sec)   p_kst 1.386364e-02   p_cons 9.778273e-01   p_joint 3.724545e-02

Outputting figure to mutsig2_images.part000000000006/ALK.21_4979_110000_0.013864_0.97783_0.037245.png
                gene_name: ALK
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 5 percent done.
AKAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
AKAP6   10000 perm   3 sec   (3105 perm/sec)   p_kst 5.127000e-01   p_cons 5.690000e-01   p_joint 7.810000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP6.16_7008_10000_0.5127_0.569_0.781.png
                gene_name: AKAP6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 7 percent done.
ALPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 3.599350e-02	ci left: 5.326745e-01	ci right 5.523008e-01	k: 5425	n:10000
ALPK1   10000 perm   3 sec   (3954 perm/sec)   p_kst 5.425000e-01   p_cons 5.000000e-02   p_joint 2.153000e-01

Joint ci ratio: 5.683430e-02	ci left: 1.866603e-01	ci right 1.976294e-01	k: 3842	n:20000
Cons ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
KS ci ratio: 2.629252e-02	ci left: 5.194017e-01	ci right 5.332906e-01	k: 10527	n:20000
ALPK1   20000 perm   6 sec   (3603 perm/sec)   p_kst 5.263500e-01   p_cons 4.895000e-02   p_joint 1.921000e-01

Joint ci ratio: 5.402304e-02	ci left: 1.452517e-01	ci right 1.533497e-01	k: 4478	n:30000
Cons ci ratio: 9.956132e-02	ci left: 4.668200e-02	ci right 5.160578e-02	k: 1473	n:30000
KS ci ratio: 2.097180e-02	ci left: 5.323383e-01	ci right 5.436543e-01	k: 16140	n:30000
ALPK1   30000 perm   9 sec   (3450 perm/sec)   p_kst 5.380000e-01   p_cons 4.910000e-02   p_joint 1.492667e-01

Outputting figure to mutsig2_images.part000000000006/ALPK1.12_3791_30000_0.538_0.0491_0.14927.png
                gene_name: ALPK1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 8 percent done.
ALDH1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
ALDH1B1   10000 perm   2 sec   (4897 perm/sec)   p_kst 9.990000e-02   p_cons 2.012000e-01   p_joint 2.167000e-01

Joint ci ratio: 5.901115e-02	ci left: 1.753892e-01	ci right 1.861038e-01	k: 3614	n:20000
Cons ci ratio: 5.557545e-02	ci left: 1.936343e-01	ci right 2.047533e-01	k: 3983	n:20000
KS ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
ALDH1B1   20000 perm   4 sec   (4471 perm/sec)   p_kst 1.061000e-01   p_cons 1.991500e-01   p_joint 1.807000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1B1.9_1558_20000_0.1061_0.19915_0.1807.png
                gene_name: ALDH1B1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 10 percent done.
ALG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
Cons ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
KS ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
ALG10   10000 perm   2 sec   (5357 perm/sec)   p_kst 8.240000e-02   p_cons 9.914000e-01   p_joint 2.455000e-01

Joint ci ratio: 5.052384e-02	ci left: 2.254705e-01	ci right 2.372077e-01	k: 4626	n:20000
Cons ci ratio: 2.750087e-03	ci left: 9.888430e-01	ci right 9.916117e-01	k: 19806	n:20000
KS ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
ALG10   20000 perm   4 sec   (4741 perm/sec)   p_kst 7.840000e-02   p_cons 9.903000e-01   p_joint 2.313000e-01

Outputting figure to mutsig2_images.part000000000006/ALG10.9_1434_20000_0.0784_0.9903_0.2313.png
                gene_name: ALG10
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
ALG13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
Cons ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
KS ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
ALG13   10000 perm   2 sec   (4012 perm/sec)   p_kst 3.817000e-01   p_cons 8.953000e-01   p_joint 6.390000e-01

Outputting figure to mutsig2_images.part000000000006/ALG13.9_3664_10000_0.3817_0.8953_0.639.png
                gene_name: ALG13
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 13 percent done.
ALDH1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
Cons ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
ALDH1A2   10000 perm   2 sec   (4734 perm/sec)   p_kst 1.073000e-01   p_cons 4.316000e-01   p_joint 1.711000e-01

Joint ci ratio: 6.416797e-02	ci left: 1.521806e-01	ci right 1.623193e-01	k: 3144	n:20000
Cons ci ratio: 3.281880e-02	ci left: 4.094558e-01	ci right 4.231685e-01	k: 8326	n:20000
KS ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
ALDH1A2   20000 perm   5 sec   (4297 perm/sec)   p_kst 1.090000e-01   p_cons 4.163000e-01   p_joint 1.572000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A2.8_1609_20000_0.109_0.4163_0.1572.png
                gene_name: ALDH1A2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
ALDH8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
ALDH8A1   10000 perm   2 sec   (5423 perm/sec)   p_kst 3.373000e-01   p_cons 6.860000e-02   p_joint 1.585000e-01

Joint ci ratio: 6.562248e-02	ci left: 1.464090e-01	ci right 1.563926e-01	k: 3027	n:20000
Cons ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
KS ci ratio: 3.634078e-02	ci left: 3.610619e-01	ci right 3.744766e-01	k: 7355	n:20000
ALDH8A1   20000 perm   4 sec   (4763 perm/sec)   p_kst 3.677500e-01   p_cons 6.720000e-02   p_joint 1.513500e-01

Joint ci ratio: 4.221302e-02	ci left: 2.185316e-01	ci right 2.279888e-01	k: 6697	n:30000
Cons ci ratio: 8.031301e-02	ci left: 7.060452e-02	ci right 7.654505e-02	k: 2206	n:30000
KS ci ratio: 2.961050e-02	ci left: 3.632701e-01	ci right 3.742220e-01	k: 11062	n:30000
ALDH8A1   30000 perm   7 sec   (4523 perm/sec)   p_kst 3.687333e-01   p_cons 7.353333e-02   p_joint 2.232333e-01

Outputting figure to mutsig2_images.part000000000006/ALDH8A1.8_1492_30000_0.36873_0.073533_0.22323.png
                gene_name: ALDH8A1
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 16 percent done.
AKR1B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
AKR1B10   10000 perm   2 sec   (5723 perm/sec)   p_kst 7.430000e-02   p_cons 1.540000e-02   p_joint 3.000000e-02

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 2.120444e-01	ci left: 1.501694e-02	ci right 1.862551e-02	k: 335	n:20000
KS ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
AKR1B10   20000 perm   4 sec   (5014 perm/sec)   p_kst 7.650000e-02   p_cons 1.675000e-02   p_joint 1.715000e-02

Joint ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
Cons ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
KS ci ratio: 8.159723e-02	ci left: 6.851120e-02	ci right 7.437212e-02	k: 2142	n:30000
AKR1B10   30000 perm   6 sec   (4743 perm/sec)   p_kst 7.140000e-02   p_cons 1.656667e-02   p_joint 1.880000e-02

Joint ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
Cons ci ratio: 1.501673e-01	ci left: 1.549096e-02	ci right 1.802990e-02	k: 669	n:40000
KS ci ratio: 7.084369e-02	ci left: 6.857564e-02	ci right 7.363684e-02	k: 2843	n:40000
AKR1B10   40000 perm   9 sec   (4582 perm/sec)   p_kst 7.107500e-02   p_cons 1.672500e-02   p_joint 1.347500e-02

Joint ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
Cons ci ratio: 1.326721e-01	ci left: 1.602043e-02	ci right 1.831612e-02	k: 857	n:50000
KS ci ratio: 6.347043e-02	ci left: 6.862588e-02	ci right 7.314409e-02	k: 3543	n:50000
AKR1B10   50000 perm   11 sec   (4454 perm/sec)   p_kst 7.086000e-02   p_cons 1.714000e-02   p_joint 1.042000e-02

Joint ci ratio: 1.481530e-01	ci left: 1.067829e-02	ci right 1.240277e-02	k: 691	n:60000
Cons ci ratio: 1.270559e-01	ci left: 1.462359e-02	ci right 1.662367e-02	k: 936	n:60000
KS ci ratio: 5.779280e-02	ci left: 6.915478e-02	ci right 7.328681e-02	k: 4272	n:60000
AKR1B10   60000 perm   14 sec   (4342 perm/sec)   p_kst 7.120000e-02   p_cons 1.560000e-02   p_joint 1.151667e-02

Joint ci ratio: 1.076640e-01	ci left: 1.758416e-02	ci right 1.959888e-02	k: 1300	n:70000
Cons ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
KS ci ratio: 5.364011e-02	ci left: 6.898114e-02	ci right 7.279738e-02	k: 4961	n:70000
AKR1B10   70000 perm   16 sec   (4244 perm/sec)   p_kst 7.087143e-02   p_cons 1.585714e-02   p_joint 1.857143e-02

Joint ci ratio: 1.136619e-01	ci left: 1.381667e-02	ci right 1.549379e-02	k: 1171	n:80000
Cons ci ratio: 1.085574e-01	ci left: 1.516618e-02	ci right 1.691917e-02	k: 1282	n:80000
KS ci ratio: 5.010380e-02	ci left: 6.929143e-02	ci right 7.286475e-02	k: 5685	n:80000
AKR1B10   80000 perm   19 sec   (4152 perm/sec)   p_kst 7.106250e-02   p_cons 1.602500e-02   p_joint 1.463750e-02

Joint ci ratio: 1.090010e-01	ci left: 1.339391e-02	ci right 1.494875e-02	k: 1274	n:90000
Cons ci ratio: 1.016842e-01	ci left: 1.541778e-02	ci right 1.708027e-02	k: 1461	n:90000
KS ci ratio: 4.720558e-02	ci left: 6.948425e-02	ci right 7.285456e-02	k: 6404	n:90000
AKR1B10   90000 perm   22 sec   (4064 perm/sec)   p_kst 7.115556e-02   p_cons 1.623333e-02   p_joint 1.415556e-02

Joint ci ratio: 1.057674e-01	ci left: 1.283283e-02	ci right 1.427559e-02	k: 1354	n:100000
Cons ci ratio: 9.608941e-02	ci left: 1.558281e-02	ci right 1.716542e-02	k: 1636	n:100000
KS ci ratio: 4.486353e-02	ci left: 6.933650e-02	ci right 7.252844e-02	k: 7092	n:100000
AKR1B10   100000 perm   25 sec   (3985 perm/sec)   p_kst 7.092000e-02   p_cons 1.636000e-02   p_joint 1.354000e-02

Joint ci ratio: 1.008625e-01	ci left: 1.286179e-02	ci right 1.423676e-02	k: 1489	n:110000
Cons ci ratio: 9.127560e-02	ci left: 1.573765e-02	ci right 1.725164e-02	k: 1813	n:110000
KS ci ratio: 4.280022e-02	ci left: 6.933605e-02	ci right 7.237753e-02	k: 7793	n:110000
AKR1B10   110000 perm   28 sec   (3910 perm/sec)   p_kst 7.084545e-02   p_cons 1.648182e-02   p_joint 1.353636e-02

Joint ci ratio: 1.010921e-01	ci left: 1.174902e-02	ci right 1.300805e-02	k: 1484	n:120000
Cons ci ratio: 8.745515e-02	ci left: 1.574601e-02	ci right 1.719416e-02	k: 1975	n:120000
KS ci ratio: 4.097693e-02	ci left: 6.940454e-02	ci right 7.231624e-02	k: 8502	n:120000
AKR1B10   120000 perm   31 sec   (3838 perm/sec)   p_kst 7.085000e-02   p_cons 1.645833e-02   p_joint 1.236667e-02

Joint ci ratio: 8.557510e-02	ci left: 1.520440e-02	ci right 1.657116e-02	k: 2064	n:130000
Cons ci ratio: 8.377917e-02	ci left: 1.586721e-02	ci right 1.726217e-02	k: 2152	n:130000
KS ci ratio: 3.947691e-02	ci left: 6.910658e-02	ci right 7.189723e-02	k: 9164	n:130000
AKR1B10   130000 perm   35 sec   (3764 perm/sec)   p_kst 7.049231e-02   p_cons 1.655385e-02   p_joint 1.587692e-02

Outputting figure to mutsig2_images.part000000000006/AKR1B10.7_991_130000_0.070492_0.016554_0.015877.png
                gene_name: AKR1B10
               theta_stop: 0.086 
                    nperm: 130000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 18 percent done.
ALG10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
Cons ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
ALG10B   10000 perm   2 sec   (5993 perm/sec)   p_kst 1.194000e-01   p_cons 2.844000e-01   p_joint 1.299000e-01

Joint ci ratio: 6.040261e-02	ci left: 1.686698e-01	ci right 1.792252e-01	k: 3478	n:20000
Cons ci ratio: 4.503430e-02	ci left: 2.685219e-01	ci right 2.809436e-01	k: 5494	n:20000
KS ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
ALG10B   20000 perm   4 sec   (5242 perm/sec)   p_kst 1.161000e-01   p_cons 2.747000e-01   p_joint 1.739000e-01

Outputting figure to mutsig2_images.part000000000006/ALG10B.6_1434_20000_0.1161_0.2747_0.1739.png
                gene_name: ALG10B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 20 percent done.
ALLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
Cons ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
KS ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
ALLC   10000 perm   2 sec   (5383 perm/sec)   p_kst 3.721000e-01   p_cons 3.470000e-01   p_joint 5.056000e-01

Outputting figure to mutsig2_images.part000000000006/ALLC.6_1220_10000_0.3721_0.347_0.5056.png
                gene_name: ALLC
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
ALOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
ALOX5   10000 perm   2 sec   (4970 perm/sec)   p_kst 6.439000e-01   p_cons 8.787000e-01   p_joint 8.106000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX5.6_2081_10000_0.6439_0.8787_0.8106.png
                gene_name: ALOX5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 23 percent done.
AKNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
Cons ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
KS ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
AKNA   10000 perm   2 sec   (4214 perm/sec)   p_kst 5.247000e-01   p_cons 6.330000e-01   p_joint 6.466000e-01

Outputting figure to mutsig2_images.part000000000006/AKNA.5_4404_10000_0.5247_0.633_0.6466.png
                gene_name: AKNA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
AKNAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
AKNAD1   10000 perm   2 sec   (5155 perm/sec)   p_kst 9.292000e-01   p_cons 4.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKNAD1.5_2571_10000_0.9292_0.4525_1.png
                gene_name: AKNAD1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
AKR1B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
KS ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
AKR1B15   10000 perm   2 sec   (5334 perm/sec)   p_kst 4.250000e-01   p_cons 6.170000e-02   p_joint 1.348000e-01

Joint ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
Cons ci ratio: 1.173992e-01	ci left: 4.969223e-02	ci right 5.593859e-02	k: 1055	n:20000
KS ci ratio: 3.365325e-02	ci left: 3.973383e-01	ci right 4.109895e-01	k: 8083	n:20000
AKR1B15   20000 perm   4 sec   (4770 perm/sec)   p_kst 4.041500e-01   p_cons 5.275000e-02   p_joint 1.349000e-01

Joint ci ratio: 4.952858e-02	ci left: 1.684379e-01	ci right 1.770256e-01	k: 5181	n:30000
Cons ci ratio: 9.065570e-02	ci left: 5.600099e-02	ci right 6.135154e-02	k: 1759	n:30000
KS ci ratio: 2.744159e-02	ci left: 3.992383e-01	ci right 4.103801e-01	k: 12144	n:30000
AKR1B15   30000 perm   7 sec   (4565 perm/sec)   p_kst 4.048000e-01   p_cons 5.863333e-02   p_joint 1.727000e-01

Outputting figure to mutsig2_images.part000000000006/AKR1B15.5_1075_30000_0.4048_0.058633_0.1727.png
                gene_name: AKR1B15
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 28 percent done.
AKR1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
AKR1D1   10000 perm   2 sec   (5753 perm/sec)   p_kst 1.311000e-01   p_cons 4.130000e-02   p_joint 3.900000e-02

Joint ci ratio: 8.945464e-02	ci left: 8.366805e-02	ci right 9.155233e-02	k: 1751	n:20000
Cons ci ratio: 1.412098e-01	ci left: 3.447473e-02	ci right 3.976094e-02	k: 741	n:20000
KS ci ratio: 7.234636e-02	ci left: 1.233499e-01	ci right 1.326585e-01	k: 2559	n:20000
AKR1D1   20000 perm   4 sec   (5047 perm/sec)   p_kst 1.279500e-01   p_cons 3.705000e-02   p_joint 8.755000e-02

Joint ci ratio: 7.045510e-02	ci left: 9.022840e-02	ci right 9.685056e-02	k: 2805	n:30000
Cons ci ratio: 1.156765e-01	ci left: 3.473025e-02	ci right 3.902670e-02	k: 1105	n:30000
KS ci ratio: 5.910621e-02	ci left: 1.240744e-01	ci right 1.316645e-01	k: 3835	n:30000
AKR1D1   30000 perm   6 sec   (4765 perm/sec)   p_kst 1.278333e-01   p_cons 3.683333e-02   p_joint 9.350000e-02

Joint ci ratio: 7.075000e-02	ci left: 6.874776e-02	ci right 7.381469e-02	k: 2850	n:40000
Cons ci ratio: 9.960780e-02	ci left: 3.541533e-02	ci right 3.915223e-02	k: 1490	n:40000
KS ci ratio: 4.985318e-02	ci left: 1.305274e-01	ci right 1.372258e-01	k: 5354	n:40000
AKR1D1   40000 perm   9 sec   (4620 perm/sec)   p_kst 1.338500e-01   p_cons 3.725000e-02   p_joint 7.125000e-02

Outputting figure to mutsig2_images.part000000000006/AKR1D1.5_1017_40000_0.13385_0.03725_0.07125.png
                gene_name: AKR1D1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 30 percent done.
AKT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
AKT3   10000 perm   2 sec   (5059 perm/sec)   p_kst 2.346000e-01   p_cons 7.016000e-01   p_joint 3.137000e-01

Outputting figure to mutsig2_images.part000000000006/AKT3.5_1540_10000_0.2346_0.7016_0.3137.png
                gene_name: AKT3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 31 percent done.
ALDH1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
Cons ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
KS ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
ALDH1L1   10000 perm   2 sec   (4830 perm/sec)   p_kst 7.281000e-01   p_cons 1.403000e-01   p_joint 4.294000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1L1.5_2797_10000_0.7281_0.1403_0.4294.png
                gene_name: ALDH1L1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 33 percent done.
ALDH1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.009327e-02	ci left: 3.701742e-01	ci right 3.892959e-01	k: 3797	n:10000
Cons ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
ALDH1L2   10000 perm   2 sec   (4580 perm/sec)   p_kst 6.871000e-01   p_cons 1.434000e-01   p_joint 3.797000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1L2.5_2864_10000_0.6871_0.1434_0.3797.png
                gene_name: ALDH1L2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 34 percent done.
ALG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
ALG2   10000 perm   2 sec   (5232 perm/sec)   p_kst 1.444000e-01   p_cons 6.680000e-02   p_joint 6.870000e-02

Joint ci ratio: 8.077409e-02	ci left: 1.010787e-01	ci right 1.096364e-01	k: 2106	n:20000
Cons ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
KS ci ratio: 6.824597e-02	ci left: 1.367463e-01	ci right 1.464582e-01	k: 2831	n:20000
ALG2   20000 perm   4 sec   (4695 perm/sec)   p_kst 1.415500e-01   p_cons 6.945000e-02   p_joint 1.053000e-01

Joint ci ratio: 8.897606e-02	ci left: 5.805662e-02	ci right 6.349550e-02	k: 1822	n:30000
Cons ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
KS ci ratio: 5.661882e-02	ci left: 1.338522e-01	ci right 1.416848e-01	k: 4132	n:30000
ALG2   30000 perm   7 sec   (4495 perm/sec)   p_kst 1.377333e-01   p_cons 6.833333e-02   p_joint 6.073333e-02

Outputting figure to mutsig2_images.part000000000006/ALG2.5_1259_30000_0.13773_0.068333_0.060733.png
                gene_name: ALG2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 36 percent done.
ALG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
ALG3   10000 perm   2 sec   (5791 perm/sec)   p_kst 3.200000e-03   p_cons 9.770000e-02   p_joint 1.340000e-02

Joint ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
Cons ci ratio: 8.449849e-02	ci left: 9.303020e-02	ci right 1.012873e-01	k: 1942	n:20000
KS ci ratio: 5.095746e-01	ci left: 2.202806e-03	ci right 3.747331e-03	k: 58	n:20000
ALG3   20000 perm   4 sec   (5115 perm/sec)   p_kst 2.900000e-03   p_cons 9.710000e-02   p_joint 7.050000e-03

Joint ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
Cons ci ratio: 7.180401e-02	ci left: 8.711266e-02	ci right 9.363359e-02	k: 2710	n:30000
KS ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
ALG3   30000 perm   6 sec   (4834 perm/sec)   p_kst 3.033333e-03   p_cons 9.033333e-02   p_joint 1.496667e-02

Joint ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
Cons ci ratio: 6.225691e-02	ci left: 8.736069e-02	ci right 9.299897e-02	k: 3606	n:40000
KS ci ratio: 3.543541e-01	ci left: 2.510680e-03	ci right 3.613423e-03	k: 121	n:40000
ALG3   40000 perm   9 sec   (4674 perm/sec)   p_kst 3.025000e-03   p_cons 9.015000e-02   p_joint 1.187500e-02

Joint ci ratio: 1.803503e-01	ci left: 8.515444e-03	ci right 1.022225e-02	k: 467	n:50000
Cons ci ratio: 5.599720e-02	ci left: 8.675502e-02	ci right 9.177279e-02	k: 4462	n:50000
KS ci ratio: 3.185198e-01	ci left: 2.539683e-03	ci right 3.519427e-03	k: 150	n:50000
ALG3   50000 perm   11 sec   (4539 perm/sec)   p_kst 3.000000e-03   p_cons 8.924000e-02   p_joint 9.340000e-03

Joint ci ratio: 1.888018e-01	ci left: 6.459656e-03	ci right 7.822004e-03	k: 427	n:60000
Cons ci ratio: 5.080435e-02	ci left: 8.796877e-02	ci right 9.257095e-02	k: 5415	n:60000
KS ci ratio: 2.877571e-01	ci left: 2.640096e-03	ci right 3.542364e-03	k: 184	n:60000
ALG3   60000 perm   14 sec   (4420 perm/sec)   p_kst 3.066667e-03   p_cons 9.025000e-02   p_joint 7.116667e-03

Joint ci ratio: 2.013445e-01	ci left: 4.843402e-03	ci right 5.941068e-03	k: 376	n:70000
Cons ci ratio: 4.694052e-02	ci left: 8.846934e-02	ci right 9.273609e-02	k: 6341	n:70000
KS ci ratio: 2.681831e-01	ci left: 2.635088e-03	ci right 3.464098e-03	k: 212	n:70000
ALG3   70000 perm   16 sec   (4303 perm/sec)   p_kst 3.028571e-03   p_cons 9.058571e-02   p_joint 5.371429e-03

Joint ci ratio: 2.008781e-01	ci left: 4.261586e-03	ci right 5.224871e-03	k: 378	n:80000
Cons ci ratio: 4.384902e-02	ci left: 8.882997e-02	ci right 9.282476e-02	k: 7265	n:80000
KS ci ratio: 2.495440e-01	ci left: 2.691478e-03	ci right 3.470250e-03	k: 245	n:80000
ALG3   80000 perm   19 sec   (4214 perm/sec)   p_kst 3.062500e-03   p_cons 9.081250e-02   p_joint 4.725000e-03

Joint ci ratio: 2.082298e-01	ci left: 3.513835e-03	ci right 4.340866e-03	k: 352	n:90000
Cons ci ratio: 4.149009e-02	ci left: 8.835813e-02	ci right 9.211277e-02	k: 8120	n:90000
KS ci ratio: 2.386479e-01	ci left: 2.632345e-03	ci right 3.355833e-03	k: 268	n:90000
ALG3   90000 perm   22 sec   (4128 perm/sec)   p_kst 2.977778e-03   p_cons 9.022222e-02   p_joint 3.911111e-03

Joint ci ratio: 2.128582e-01	ci left: 3.020276e-03	ci right 3.748999e-03	k: 337	n:100000
Cons ci ratio: 3.934979e-02	ci left: 8.850077e-02	ci right 9.206304e-02	k: 9027	n:100000
KS ci ratio: 2.278932e-01	ci left: 2.613920e-03	ci right 3.295417e-03	k: 294	n:100000
ALG3   100000 perm   25 sec   (4052 perm/sec)   p_kst 2.940000e-03   p_cons 9.027000e-02   p_joint 3.370000e-03

Joint ci ratio: 2.062629e-01	ci left: 2.935197e-03	ci right 3.618680e-03	k: 359	n:110000
Cons ci ratio: 3.754309e-02	ci left: 8.847733e-02	ci right 9.187158e-02	k: 9918	n:110000
KS ci ratio: 2.195037e-01	ci left: 2.573662e-03	ci right 3.216628e-03	k: 317	n:110000
ALG3   110000 perm   28 sec   (3976 perm/sec)   p_kst 2.881818e-03   p_cons 9.016364e-02   p_joint 3.263636e-03

Joint ci ratio: 2.238047e-01	ci left: 2.264700e-03	ci right 2.843091e-03	k: 305	n:120000
Cons ci ratio: 3.596621e-02	ci left: 8.845268e-02	ci right 9.170049e-02	k: 10808	n:120000
KS ci ratio: 2.101313e-01	ci left: 2.587862e-03	ci right 3.203218e-03	k: 346	n:120000
ALG3   120000 perm   31 sec   (3906 perm/sec)   p_kst 2.883333e-03   p_cons 9.006667e-02   p_joint 2.541667e-03

Joint ci ratio: 1.737528e-01	ci left: 3.561088e-03	ci right 4.245949e-03	k: 506	n:130000
Cons ci ratio: 3.464104e-02	ci left: 8.811382e-02	ci right 9.122759e-02	k: 11656	n:130000
KS ci ratio: 2.007969e-01	ci left: 2.629592e-03	ci right 3.223693e-03	k: 379	n:130000
ALG3   130000 perm   34 sec   (3837 perm/sec)   p_kst 2.915385e-03   p_cons 8.966154e-02   p_joint 3.892308e-03

Joint ci ratio: 1.734342e-01	ci left: 3.320353e-03	ci right 3.957620e-03	k: 508	n:140000
Cons ci ratio: 3.334259e-02	ci left: 8.835698e-02	ci right 9.136004e-02	k: 12579	n:140000
KS ci ratio: 1.933106e-01	ci left: 2.645482e-03	ci right 3.218269e-03	k: 409	n:140000
ALG3   140000 perm   37 sec   (3772 perm/sec)   p_kst 2.921429e-03   p_cons 8.985000e-02   p_joint 3.628571e-03

Joint ci ratio: 1.674544e-01	ci left: 3.335145e-03	ci right 3.950954e-03	k: 545	n:150000
Cons ci ratio: 3.217474e-02	ci left: 8.859606e-02	ci right 9.149981e-02	k: 13506	n:150000
KS ci ratio: 1.889879e-01	ci left: 2.589715e-03	ci right 3.136449e-03	k: 428	n:150000
ALG3   150000 perm   41 sec   (3699 perm/sec)   p_kst 2.853333e-03   p_cons 9.004000e-02   p_joint 3.633333e-03

Joint ci ratio: 1.600004e-01	ci left: 3.438401e-03	ci right 4.042301e-03	k: 597	n:160000
Cons ci ratio: 3.113462e-02	ci left: 8.873858e-02	ci right 9.155129e-02	k: 14422	n:160000
KS ci ratio: 1.805498e-01	ci left: 2.672271e-03	ci right 3.208492e-03	k: 469	n:160000
ALG3   160000 perm   44 sec   (3639 perm/sec)   p_kst 2.931250e-03   p_cons 9.013750e-02   p_joint 3.731250e-03

Joint ci ratio: 1.567630e-01	ci left: 3.377364e-03	ci right 3.957412e-03	k: 622	n:170000
Cons ci ratio: 3.018602e-02	ci left: 8.888319e-02	ci right 9.161315e-02	k: 15341	n:170000
KS ci ratio: 1.761122e-01	ci left: 2.649951e-03	ci right 3.167233e-03	k: 493	n:170000
ALG3   170000 perm   48 sec   (3578 perm/sec)   p_kst 2.900000e-03   p_cons 9.024118e-02   p_joint 3.658824e-03

Joint ci ratio: 1.612559e-01	ci left: 3.008312e-03	ci right 3.541218e-03	k: 588	n:180000
Cons ci ratio: 2.931518e-02	ci left: 8.903496e-02	ci right 9.168936e-02	k: 16264	n:180000
KS ci ratio: 1.714891e-01	ci left: 2.646206e-03	ci right 3.147794e-03	k: 520	n:180000
ALG3   180000 perm   51 sec   (3523 perm/sec)   p_kst 2.888889e-03   p_cons 9.035556e-02   p_joint 3.266667e-03

Joint ci ratio: 1.573008e-01	ci left: 3.001580e-03	ci right 3.519022e-03	k: 618	n:190000
Cons ci ratio: 2.851105e-02	ci left: 8.919791e-02	ci right 9.178302e-02	k: 17192	n:190000
KS ci ratio: 1.663014e-01	ci left: 2.673279e-03	ci right 3.163135e-03	k: 553	n:190000
ALG3   190000 perm   55 sec   (3469 perm/sec)   p_kst 2.910526e-03   p_cons 9.048421e-02   p_joint 3.252632e-03

Joint ci ratio: 1.555589e-01	ci left: 2.918751e-03	ci right 3.415822e-03	k: 632	n:200000
Cons ci ratio: 2.776965e-02	ci left: 8.934546e-02	ci right 9.186642e-02	k: 18120	n:200000
KS ci ratio: 1.622522e-01	ci left: 2.673860e-03	ci right 3.150729e-03	k: 581	n:200000
ALG3   200000 perm   59 sec   (3418 perm/sec)   p_kst 2.905000e-03   p_cons 9.060000e-02   p_joint 3.160000e-03

Joint ci ratio: 1.509748e-01	ci left: 2.958360e-03	ci right 3.445988e-03	k: 671	n:210000
Cons ci ratio: 2.710123e-02	ci left: 8.937088e-02	ci right 9.183091e-02	k: 19025	n:210000
KS ci ratio: 1.578377e-01	ci left: 2.697385e-03	ci right 3.164122e-03	k: 614	n:210000
ALG3   210000 perm   62 sec   (3367 perm/sec)   p_kst 2.923810e-03   p_cons 9.059524e-02   p_joint 3.195238e-03

Joint ci ratio: 1.481383e-01	ci left: 2.937646e-03	ci right 3.411957e-03	k: 697	n:220000
Cons ci ratio: 2.650666e-02	ci left: 8.922296e-02	ci right 9.162421e-02	k: 19892	n:220000
KS ci ratio: 1.547257e-01	ci left: 2.683968e-03	ci right 3.138377e-03	k: 639	n:220000
ALG3   220000 perm   66 sec   (3317 perm/sec)   p_kst 2.904545e-03   p_cons 9.041818e-02   p_joint 3.168182e-03

Joint ci ratio: 1.259240e-01	ci left: 3.931369e-03	ci right 4.463854e-03	k: 964	n:230000
Cons ci ratio: 2.591185e-02	ci left: 8.932618e-02	ci right 9.167546e-02	k: 20814	n:230000
KS ci ratio: 1.519054e-01	ci left: 2.667616e-03	ci right 3.110276e-03	k: 663	n:230000
ALG3   230000 perm   71 sec   (3261 perm/sec)   p_kst 2.882609e-03   p_cons 9.049565e-02   p_joint 4.191304e-03

Joint ci ratio: 1.294147e-01	ci left: 3.561803e-03	ci right 4.058632e-03	k: 913	n:240000
Cons ci ratio: 2.537335e-02	ci left: 8.930535e-02	ci right 9.160455e-02	k: 21708	n:240000
KS ci ratio: 1.496709e-01	ci left: 2.636652e-03	ci right 3.067161e-03	k: 683	n:240000
ALG3   240000 perm   75 sec   (3216 perm/sec)   p_kst 2.845833e-03   p_cons 9.045000e-02   p_joint 3.804167e-03

Joint ci ratio: 1.320608e-01	ci left: 3.280009e-03	ci right 3.747618e-03	k: 877	n:250000
Cons ci ratio: 2.485499e-02	ci left: 8.936620e-02	ci right 9.161930e-02	k: 22622	n:250000
KS ci ratio: 1.473224e-01	ci left: 2.615914e-03	ci right 3.035744e-03	k: 705	n:250000
ALG3   250000 perm   79 sec   (3169 perm/sec)   p_kst 2.820000e-03   p_cons 9.048800e-02   p_joint 3.508000e-03

Joint ci ratio: 1.296474e-01	ci left: 3.276622e-03	ci right 3.734555e-03	k: 910	n:260000
Cons ci ratio: 2.437341e-02	ci left: 8.938075e-02	ci right 9.158993e-02	k: 23525	n:260000
KS ci ratio: 1.444852e-01	ci left: 2.619063e-03	ci right 3.030606e-03	k: 733	n:260000
ALG3   260000 perm   83 sec   (3127 perm/sec)   p_kst 2.819231e-03   p_cons 9.048077e-02   p_joint 3.500000e-03

Joint ci ratio: 1.342428e-01	ci left: 2.936761e-03	ci right 3.362904e-03	k: 849	n:270000
Cons ci ratio: 2.391664e-02	ci left: 8.940934e-02	ci right 9.157724e-02	k: 24432	n:270000
KS ci ratio: 1.418058e-01	ci left: 2.622051e-03	ci right 3.025776e-03	k: 761	n:270000
ALG3   270000 perm   87 sec   (3086 perm/sec)   p_kst 2.818519e-03   p_cons 9.048889e-02   p_joint 3.144444e-03

Joint ci ratio: 1.353732e-01	ci left: 2.783548e-03	ci right 3.191133e-03	k: 835	n:280000
Cons ci ratio: 2.348054e-02	ci left: 8.946466e-02	ci right 9.159382e-02	k: 25347	n:280000
KS ci ratio: 1.398036e-01	ci left: 2.604208e-03	ci right 2.999052e-03	k: 783	n:280000
ALG3   280000 perm   92 sec   (3046 perm/sec)   p_kst 2.796429e-03   p_cons 9.052500e-02   p_joint 2.982143e-03

Joint ci ratio: 1.077304e-01	ci left: 4.299906e-03	ci right 4.792835e-03	k: 1317	n:290000
Cons ci ratio: 2.306022e-02	ci left: 8.956796e-02	ci right 9.166092e-02	k: 26277	n:290000
KS ci ratio: 1.370340e-01	ci left: 2.620933e-03	ci right 3.009799e-03	k: 815	n:290000
ALG3   290000 perm   97 sec   (3002 perm/sec)   p_kst 2.810345e-03   p_cons 9.061034e-02   p_joint 4.541379e-03

Joint ci ratio: 9.308492e-02	ci left: 5.603016e-03	ci right 6.153262e-03	k: 1762	n:300000
Cons ci ratio: 2.267866e-02	ci left: 8.954199e-02	ci right 9.159926e-02	k: 27170	n:300000
KS ci ratio: 1.340271e-01	ci left: 2.652723e-03	ci right 3.036981e-03	k: 852	n:300000
ALG3   300000 perm   101 sec   (2964 perm/sec)   p_kst 2.840000e-03   p_cons 9.056667e-02   p_joint 5.873333e-03

Joint ci ratio: 9.288209e-02	ci left: 5.447459e-03	ci right 5.981199e-03	k: 1770	n:310000
Cons ci ratio: 2.229229e-02	ci left: 8.968807e-02	ci right 9.171314e-02	k: 28116	n:310000
KS ci ratio: 1.318801e-01	ci left: 2.654470e-03	ci right 3.032339e-03	k: 880	n:310000
ALG3   310000 perm   106 sec   (2925 perm/sec)   p_kst 2.838710e-03   p_cons 9.069677e-02   p_joint 5.709677e-03

Joint ci ratio: 1.121997e-01	ci left: 3.586728e-03	ci right 4.016085e-03	k: 1215	n:320000
Cons ci ratio: 2.136446e-02	ci left: 9.417279e-02	ci right 9.620955e-02	k: 30460	n:320000
KS ci ratio: 1.294056e-01	ci left: 2.674297e-03	ci right 3.047297e-03	k: 914	n:320000
ALG3   320000 perm   111 sec   (2888 perm/sec)   p_kst 2.856250e-03   p_cons 9.518750e-02   p_joint 3.796875e-03

Joint ci ratio: 1.115635e-01	ci left: 3.519269e-03	ci right 3.938005e-03	k: 1229	n:330000
Cons ci ratio: 2.103454e-02	ci left: 9.421879e-02	ci right 9.622469e-02	k: 31422	n:330000
KS ci ratio: 1.272672e-01	ci left: 2.684182e-03	ci right 3.051907e-03	k: 945	n:330000
ALG3   330000 perm   116 sec   (2851 perm/sec)   p_kst 2.863636e-03   p_cons 9.521818e-02   p_joint 3.724242e-03

Joint ci ratio: 1.580552e-01	ci left: 1.663136e-03	ci right 1.951344e-03	k: 613	n:340000
Cons ci ratio: 2.129483e-02	ci left: 8.966646e-02	ci right 9.159934e-02	k: 30814	n:340000
KS ci ratio: 1.216026e-01	ci left: 2.861721e-03	ci right 3.235064e-03	k: 1035	n:340000
ALG3   340000 perm   121 sec   (2814 perm/sec)   p_kst 3.044118e-03   p_cons 9.062941e-02   p_joint 1.802941e-03

Joint ci ratio: 1.587079e-01	ci left: 1.601894e-03	ci right 1.880745e-03	k: 608	n:350000
Cons ci ratio: 2.099290e-02	ci left: 8.964533e-02	ci right 9.155003e-02	k: 31708	n:350000
KS ci ratio: 1.194865e-01	ci left: 2.882486e-03	ci right 3.251532e-03	k: 1072	n:350000
ALG3   350000 perm   126 sec   (2780 perm/sec)   p_kst 3.062857e-03   p_cons 9.059429e-02   p_joint 1.737143e-03

Joint ci ratio: 1.564131e-01	ci left: 1.605426e-03	ci right 1.880471e-03	k: 626	n:360000
Cons ci ratio: 2.070870e-02	ci left: 8.958408e-02	ci right 9.146140e-02	k: 32587	n:360000
KS ci ratio: 1.175303e-01	ci left: 2.899454e-03	ci right 3.264173e-03	k: 1108	n:360000
ALG3   360000 perm   131 sec   (2747 perm/sec)   p_kst 3.077778e-03   p_cons 9.051944e-02   p_joint 1.738889e-03

Joint ci ratio: 1.537382e-01	ci left: 1.619189e-03	ci right 1.891411e-03	k: 648	n:370000
Cons ci ratio: 2.043338e-02	ci left: 8.954515e-02	ci right 9.139641e-02	k: 33473	n:370000
KS ci ratio: 1.159723e-01	ci left: 2.899804e-03	ci right 3.259400e-03	k: 1138	n:370000
ALG3   370000 perm   136 sec   (2715 perm/sec)   p_kst 3.075676e-03   p_cons 9.046757e-02   p_joint 1.751351e-03

Joint ci ratio: 1.528013e-01	ci left: 1.596823e-03	ci right 1.863499e-03	k: 656	n:380000
Cons ci ratio: 2.018750e-02	ci left: 8.935648e-02	ci right 9.118135e-02	k: 34301	n:380000
KS ci ratio: 1.142787e-01	ci left: 2.910391e-03	ci right 3.265674e-03	k: 1172	n:380000
ALG3   380000 perm   142 sec   (2683 perm/sec)   p_kst 3.084211e-03   p_cons 9.026579e-02   p_joint 1.726316e-03

Joint ci ratio: 1.510868e-01	ci left: 1.592878e-03	ci right 1.855640e-03	k: 671	n:390000
Cons ci ratio: 1.993438e-02	ci left: 8.930780e-02	ci right 9.110855e-02	k: 35180	n:390000
KS ci ratio: 1.125170e-01	ci left: 2.927948e-03	ci right 3.279499e-03	k: 1209	n:390000
ALG3   390000 perm   147 sec   (2652 perm/sec)   p_kst 3.100000e-03   p_cons 9.020513e-02   p_joint 1.720513e-03

Joint ci ratio: 1.496470e-01	ci left: 1.584332e-03	ci right 1.842971e-03	k: 684	n:400000
Cons ci ratio: 1.967166e-02	ci left: 8.941850e-02	ci right 9.119744e-02	k: 36122	n:400000
KS ci ratio: 1.114637e-01	ci left: 2.910637e-03	ci right 3.256623e-03	k: 1232	n:400000
ALG3   400000 perm   153 sec   (2621 perm/sec)   p_kst 3.080000e-03   p_cons 9.030500e-02   p_joint 1.710000e-03

Joint ci ratio: 1.477186e-01	ci left: 1.587960e-03	ci right 1.843555e-03	k: 702	n:410000
Cons ci ratio: 1.943550e-02	ci left: 8.938552e-02	ci right 9.114222e-02	k: 37007	n:410000
KS ci ratio: 1.100011e-01	ci left: 2.917905e-03	ci right 3.259909e-03	k: 1265	n:410000
ALG3   410000 perm   158 sec   (2590 perm/sec)   p_kst 3.085366e-03   p_cons 9.026098e-02   p_joint 1.712195e-03

Joint ci ratio: 1.474069e-01	ci left: 1.557028e-03	ci right 1.807070e-03	k: 705	n:420000
Cons ci ratio: 1.920124e-02	ci left: 8.940877e-02	ci right 9.114451e-02	k: 37915	n:420000
KS ci ratio: 1.085946e-01	ci left: 2.924855e-03	ci right 3.263010e-03	k: 1298	n:420000
ALG3   420000 perm   164 sec   (2555 perm/sec)   p_kst 3.090476e-03   p_cons 9.027381e-02   p_joint 1.678571e-03

Joint ci ratio: 1.459672e-01	ci left: 1.552181e-03	ci right 1.798798e-03	k: 719	n:430000
Cons ci ratio: 1.896478e-02	ci left: 8.952136e-02	ci right 9.123765e-02	k: 38862	n:430000
KS ci ratio: 1.073216e-01	ci left: 2.926982e-03	ci right 3.261165e-03	k: 1329	n:430000
ALG3   430000 perm   170 sec   (2526 perm/sec)   p_kst 3.090698e-03   p_cons 9.037674e-02   p_joint 1.672093e-03

Joint ci ratio: 1.320108e-01	ci left: 1.867947e-03	ci right 2.134134e-03	k: 879	n:440000
Cons ci ratio: 1.873581e-02	ci left: 8.963801e-02	ci right 9.133557e-02	k: 39813	n:440000
KS ci ratio: 1.059752e-01	ci left: 2.935672e-03	ci right 3.266380e-03	k: 1363	n:440000
ALG3   440000 perm   176 sec   (2498 perm/sec)   p_kst 3.097727e-03   p_cons 9.048409e-02   p_joint 1.997727e-03

Joint ci ratio: 1.305358e-01	ci left: 1.869422e-03	ci right 2.132612e-03	k: 899	n:450000
Cons ci ratio: 1.853193e-02	ci left: 8.959911e-02	ci right 9.127728e-02	k: 40696	n:450000
KS ci ratio: 1.043047e-01	ci left: 2.965644e-03	ci right 3.294139e-03	k: 1407	n:450000
ALG3   450000 perm   182 sec   (2470 perm/sec)   p_kst 3.126667e-03   p_cons 9.043556e-02   p_joint 1.997778e-03

Joint ci ratio: 1.289687e-01	ci left: 1.875056e-03	ci right 2.135628e-03	k: 921	n:460000
Cons ci ratio: 1.832706e-02	ci left: 8.962912e-02	ci right 9.128909e-02	k: 41610	n:460000
KS ci ratio: 1.030315e-01	ci left: 2.975288e-03	ci right 3.300585e-03	k: 1442	n:460000
ALG3   460000 perm   188 sec   (2443 perm/sec)   p_kst 3.134783e-03   p_cons 9.045652e-02   p_joint 2.002174e-03

Joint ci ratio: 1.282075e-01	ci left: 1.857811e-03	ci right 2.114347e-03	k: 932	n:470000
Cons ci ratio: 1.812931e-02	ci left: 8.965371e-02	ci right 9.129603e-02	k: 42522	n:470000
KS ci ratio: 1.019077e-01	ci left: 2.978324e-03	ci right 3.300189e-03	k: 1474	n:470000
ALG3   470000 perm   194 sec   (2417 perm/sec)   p_kst 3.136170e-03   p_cons 9.047234e-02   p_joint 1.982979e-03

Joint ci ratio: 1.269217e-01	ci left: 1.857427e-03	ci right 2.111144e-03	k: 951	n:480000
Cons ci ratio: 1.794554e-02	ci left: 8.960681e-02	ci right 9.123147e-02	k: 43400	n:480000
KS ci ratio: 1.008871e-01	ci left: 2.977191e-03	ci right 3.295520e-03	k: 1504	n:480000
ALG3   480000 perm   201 sec   (2391 perm/sec)   p_kst 3.133333e-03   p_cons 9.041667e-02   p_joint 1.981250e-03

Joint ci ratio: 1.254799e-01	ci left: 1.863001e-03	ci right 2.114374e-03	k: 973	n:490000
Cons ci ratio: 1.776417e-02	ci left: 8.959038e-02	ci right 9.119814e-02	k: 44292	n:490000
KS ci ratio: 9.973365e-02	ci left: 2.986069e-03	ci right 3.301484e-03	k: 1539	n:490000
ALG3   490000 perm   207 sec   (2367 perm/sec)   p_kst 3.140816e-03   p_cons 9.039184e-02   p_joint 1.985714e-03

Joint ci ratio: 1.239614e-01	ci left: 1.872244e-03	ci right 2.121583e-03	k: 997	n:500000
Cons ci ratio: 1.758647e-02	ci left: 8.959061e-02	ci right 9.118214e-02	k: 45192	n:500000
KS ci ratio: 9.839981e-02	ci left: 3.008268e-03	ci right 3.321533e-03	k: 1581	n:500000
ALG3   500000 perm   213 sec   (2344 perm/sec)   p_kst 3.162000e-03   p_cons 9.038400e-02   p_joint 1.994000e-03

Joint ci ratio: 1.253559e-01	ci left: 1.793737e-03	ci right 2.035507e-03	k: 975	n:510000
Cons ci ratio: 1.742211e-02	ci left: 8.951474e-02	ci right 9.108991e-02	k: 46053	n:510000
KS ci ratio: 9.735894e-02	ci left: 3.014318e-03	ci right 3.324702e-03	k: 1615	n:510000
ALG3   510000 perm   220 sec   (2320 perm/sec)   p_kst 3.166667e-03   p_cons 9.030000e-02   p_joint 1.911765e-03

Joint ci ratio: 1.249102e-01	ci left: 1.772281e-03	ci right 2.010247e-03	k: 982	n:520000
Cons ci ratio: 1.725236e-02	ci left: 8.953573e-02	ci right 9.109576e-02	k: 46963	n:520000
KS ci ratio: 9.658558e-02	ci left: 3.005137e-03	ci right 3.311979e-03	k: 1641	n:520000
ALG3   520000 perm   226 sec   (2297 perm/sec)   p_kst 3.155769e-03   p_cons 9.031346e-02   p_joint 1.888462e-03

Joint ci ratio: 1.242181e-01	ci left: 1.758949e-03	ci right 1.993720e-03	k: 993	n:530000
Cons ci ratio: 1.709200e-02	ci left: 8.951276e-02	ci right 9.105776e-02	k: 47850	n:530000
KS ci ratio: 9.557206e-02	ci left: 3.012888e-03	ci right 3.317112e-03	k: 1676	n:530000
ALG3   530000 perm   233 sec   (2275 perm/sec)   p_kst 3.162264e-03   p_cons 9.028302e-02   p_joint 1.873585e-03

Joint ci ratio: 1.249146e-01	ci left: 1.706637e-03	ci right 1.935797e-03	k: 982	n:540000
Cons ci ratio: 1.692935e-02	ci left: 8.955528e-02	ci right 9.108616e-02	k: 48772	n:540000
KS ci ratio: 9.472866e-02	ci left: 3.011327e-03	ci right 3.312561e-03	k: 1706	n:540000
ALG3   540000 perm   240 sec   (2253 perm/sec)   p_kst 3.159259e-03   p_cons 9.031852e-02   p_joint 1.818519e-03

Joint ci ratio: 1.134643e-01	ci left: 2.042559e-03	ci right 2.290004e-03	k: 1190	n:550000
Cons ci ratio: 1.676977e-02	ci left: 8.961081e-02	ci right 9.112806e-02	k: 49702	n:550000
KS ci ratio: 9.390720e-02	ci left: 3.009834e-03	ci right 3.308165e-03	k: 1736	n:550000
ALG3   550000 perm   247 sec   (2227 perm/sec)   p_kst 3.156364e-03   p_cons 9.036727e-02   p_joint 2.163636e-03

Joint ci ratio: 1.127571e-01	ci left: 2.032112e-03	ci right 2.276656e-03	k: 1205	n:560000
Cons ci ratio: 1.661444e-02	ci left: 8.966620e-02	ci right 9.117019e-02	k: 50633	n:560000
KS ci ratio: 9.300121e-02	ci left: 3.015383e-03	ci right 3.311223e-03	k: 1770	n:560000
ALG3   560000 perm   254 sec   (2205 perm/sec)   p_kst 3.160714e-03   p_cons 9.041607e-02   p_joint 2.151786e-03

Joint ci ratio: 1.123863e-01	ci left: 2.010100e-03	ci right 2.251146e-03	k: 1213	n:570000
Cons ci ratio: 1.646808e-02	ci left: 8.967251e-02	ci right 9.116323e-02	k: 51537	n:570000
KS ci ratio: 9.230066e-02	ci left: 3.008752e-03	ci right 3.301597e-03	k: 1797	n:570000
ALG3   570000 perm   261 sec   (2183 perm/sec)   p_kst 3.152632e-03   p_cons 9.041579e-02   p_joint 2.128070e-03

Joint ci ratio: 1.127145e-01	ci left: 1.963711e-03	ci right 2.199928e-03	k: 1206	n:580000
Cons ci ratio: 1.632878e-02	ci left: 8.964603e-02	ci right 9.112358e-02	k: 52422	n:580000
KS ci ratio: 9.159053e-02	ci left: 3.004042e-03	ci right 3.294059e-03	k: 1825	n:580000
ALG3   580000 perm   268 sec   (2163 perm/sec)   p_kst 3.146552e-03   p_cons 9.038276e-02   p_joint 2.079310e-03

Joint ci ratio: 1.117465e-01	ci left: 1.965022e-03	ci right 2.199233e-03	k: 1227	n:590000
Cons ci ratio: 1.618278e-02	ci left: 8.972351e-02	ci right 9.118899e-02	k: 53368	n:590000
KS ci ratio: 9.094577e-02	ci left: 2.996187e-03	ci right 3.283302e-03	k: 1851	n:590000
ALG3   590000 perm   275 sec   (2143 perm/sec)   p_kst 3.137288e-03   p_cons 9.045424e-02   p_joint 2.079661e-03

Joint ci ratio: 1.108476e-01	ci left: 1.964677e-03	ci right 2.196840e-03	k: 1247	n:600000
Cons ci ratio: 1.604550e-02	ci left: 8.974864e-02	ci right 9.120198e-02	k: 54284	n:600000
KS ci ratio: 8.988335e-02	ci left: 3.017928e-03	ci right 3.303570e-03	k: 1895	n:600000
ALG3   600000 perm   283 sec   (2123 perm/sec)   p_kst 3.158333e-03   p_cons 9.047333e-02   p_joint 2.078333e-03

Joint ci ratio: 1.116593e-01	ci left: 1.903779e-03	ci right 2.130501e-03	k: 1229	n:610000
Cons ci ratio: 1.591466e-02	ci left: 8.974196e-02	ci right 9.118324e-02	k: 55181	n:610000
KS ci ratio: 8.922719e-02	ci left: 3.013327e-03	ci right 3.296342e-03	k: 1923	n:610000
ALG3   610000 perm   291 sec   (2099 perm/sec)   p_kst 3.152459e-03   p_cons 9.046066e-02   p_joint 2.014754e-03

Joint ci ratio: 1.107624e-01	ci left: 1.904433e-03	ci right 2.129293e-03	k: 1249	n:620000
Cons ci ratio: 1.578605e-02	ci left: 8.974519e-02	ci right 9.117477e-02	k: 56084	n:620000
KS ci ratio: 8.856243e-02	ci left: 3.010459e-03	ci right 3.290990e-03	k: 1952	n:620000
ALG3   620000 perm   298 sec   (2080 perm/sec)   p_kst 3.148387e-03   p_cons 9.045806e-02   p_joint 2.014516e-03

Joint ci ratio: 1.108531e-01	ci left: 1.871116e-03	ci right 2.092234e-03	k: 1247	n:630000
Cons ci ratio: 1.566262e-02	ci left: 8.972622e-02	ci right 9.114422e-02	k: 56973	n:630000
KS ci ratio: 8.797912e-02	ci left: 3.003032e-03	ci right 3.280933e-03	k: 1978	n:630000
ALG3   630000 perm   306 sec   (2061 perm/sec)   p_kst 3.139683e-03   p_cons 9.043333e-02   p_joint 1.979365e-03

Joint ci ratio: 1.122144e-01	ci left: 1.796308e-03	ci right 2.011365e-03	k: 1217	n:640000
Cons ci ratio: 1.553407e-02	ci left: 8.979196e-02	ci right 9.119925e-02	k: 57916	n:640000
KS ci ratio: 8.731986e-02	ci left: 3.001957e-03	ci right 3.277571e-03	k: 2008	n:640000
ALG3   640000 perm   313 sec   (2042 perm/sec)   p_kst 3.137500e-03   p_cons 9.049375e-02   p_joint 1.901563e-03

Joint ci ratio: 1.114395e-01	ci left: 1.794095e-03	ci right 2.007307e-03	k: 1234	n:650000
Cons ci ratio: 1.541915e-02	ci left: 8.974381e-02	ci right 9.113984e-02	k: 58786	n:650000
KS ci ratio: 8.678201e-02	ci left: 2.993397e-03	ci right 3.266446e-03	k: 2033	n:650000
ALG3   650000 perm   321 sec   (2024 perm/sec)   p_kst 3.127692e-03   p_cons 9.044000e-02   p_joint 1.898462e-03

Joint ci ratio: 8.834435e-02	ci left: 2.842812e-03	ci right 3.107035e-03	k: 1962	n:660000
Cons ci ratio: 1.530336e-02	ci left: 8.973339e-02	ci right 9.111869e-02	k: 59680	n:660000
KS ci ratio: 8.608636e-02	ci left: 2.996962e-03	ci right 3.268035e-03	k: 2066	n:660000
ALG3   660000 perm   329 sec   (2006 perm/sec)   p_kst 3.130303e-03   p_cons 9.042424e-02   p_joint 2.972727e-03

Outputting figure to mutsig2_images.part000000000006/ALG3.5_1409_660000_0.0031303_0.090424_0.0029727.png
                gene_name: ALG3
               theta_stop: 0.088 
                    nperm: 660000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0030 
       ci_ks_bounds_right: 0.0033 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.0030 
     ci_joint_bounds_left: 0.0028 
    ci_joint_bounds_right: 0.0031 

Current progress: 38 percent done.
ALPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
Cons ci ratio: 9.557126e-02	ci left: 1.370752e-01	ci right 1.509329e-01	k: 1439	n:10000
KS ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
ALPI   10000 perm   2 sec   (4965 perm/sec)   p_kst 3.120000e-02   p_cons 1.439000e-01   p_joint 4.600000e-02

Joint ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
Cons ci ratio: 6.699699e-02	ci left: 1.412316e-01	ci right 1.510715e-01	k: 2922	n:20000
KS ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
ALPI   20000 perm   4 sec   (4480 perm/sec)   p_kst 2.925000e-02   p_cons 1.461000e-01   p_joint 2.075000e-02

Joint ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
Cons ci ratio: 5.454658e-02	ci left: 1.428459e-01	ci right 1.508893e-01	k: 4405	n:30000
KS ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
ALPI   30000 perm   7 sec   (4312 perm/sec)   p_kst 2.900000e-02   p_cons 1.468333e-01   p_joint 3.043333e-02

Joint ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
Cons ci ratio: 4.861816e-02	ci left: 1.363906e-01	ci right 1.432118e-01	k: 5591	n:40000
KS ci ratio: 1.101313e-01	ci left: 2.900680e-02	ci right 3.241178e-02	k: 1227	n:40000
ALPI   40000 perm   10 sec   (4199 perm/sec)   p_kst 3.067500e-02   p_cons 1.397750e-01   p_joint 2.380000e-02

Joint ci ratio: 9.749364e-02	ci left: 2.979099e-02	ci right 3.286374e-02	k: 1565	n:50000
Cons ci ratio: 4.313814e-02	ci left: 1.386739e-01	ci right 1.448078e-01	k: 7086	n:50000
KS ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
ALPI   50000 perm   12 sec   (4109 perm/sec)   p_kst 3.102000e-02   p_cons 1.417200e-01   p_joint 3.130000e-02

Outputting figure to mutsig2_images.part000000000006/ALPI.5_1631_50000_0.03102_0.14172_0.0313.png
                gene_name: ALPI
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 39 percent done.
AKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
Cons ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KS ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
AKD1   10000 perm   3 sec   (3828 perm/sec)   p_kst 3.820000e-01   p_cons 8.843000e-01   p_joint 6.658000e-01

Outputting figure to mutsig2_images.part000000000006/AKD1.4_5908_10000_0.382_0.8843_0.6658.png
                gene_name: AKD1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 41 percent done.
ALB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
Cons ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
KS ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
ALB   10000 perm   2 sec   (5301 perm/sec)   p_kst 3.597000e-01   p_cons 8.161000e-01   p_joint 5.836000e-01

Outputting figure to mutsig2_images.part000000000006/ALB.4_1886_10000_0.3597_0.8161_0.5836.png
                gene_name: ALB
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 43 percent done.
ALDH3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
KS ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
ALDH3B2   10000 perm   2 sec   (5819 perm/sec)   p_kst 6.172000e-01   p_cons 6.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH3B2.4_1190_10000_0.6172_0.6577_1.png
                gene_name: ALDH3B2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
ALDOB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
Cons ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
KS ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
ALDOB   10000 perm   2 sec   (5150 perm/sec)   p_kst 1.400000e-02   p_cons 3.972000e-01   p_joint 4.480000e-02

Joint ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
Cons ci ratio: 3.292029e-02	ci left: 4.079596e-01	ci right 4.216652e-01	k: 8296	n:20000
KS ci ratio: 2.415168e-01	ci left: 1.142923e-02	ci right 1.461469e-02	k: 259	n:20000
ALDOB   20000 perm   4 sec   (4742 perm/sec)   p_kst 1.295000e-02   p_cons 4.148000e-01   p_joint 2.980000e-02

Joint ci ratio: 1.660694e-01	ci left: 1.671749e-02	ci right 1.977682e-02	k: 546	n:30000
Cons ci ratio: 2.674770e-02	ci left: 4.116118e-01	ci right 4.228043e-01	k: 12516	n:30000
KS ci ratio: 1.956798e-01	ci left: 1.190744e-02	ci right 1.452143e-02	k: 395	n:30000
ALDOB   30000 perm   7 sec   (4576 perm/sec)   p_kst 1.316667e-02   p_cons 4.172000e-01   p_joint 1.820000e-02

Joint ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
Cons ci ratio: 2.308494e-02	ci left: 4.140336e-01	ci right 4.237282e-01	k: 16755	n:40000
KS ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
ALDOB   40000 perm   9 sec   (4459 perm/sec)   p_kst 1.315000e-02   p_cons 4.188750e-01   p_joint 2.530000e-02

Joint ci ratio: 1.066258e-01	ci left: 2.491489e-02	ci right 2.774047e-02	k: 1315	n:50000
Cons ci ratio: 2.069790e-02	ci left: 4.133720e-01	ci right 4.220375e-01	k: 20885	n:50000
KS ci ratio: 1.508804e-01	ci left: 1.231422e-02	ci right 1.434286e-02	k: 665	n:50000
ALDOB   50000 perm   12 sec   (4321 perm/sec)   p_kst 1.330000e-02   p_cons 4.177000e-01   p_joint 2.630000e-02

Joint ci ratio: 8.459563e-02	ci left: 3.308652e-02	ci right 3.602540e-02	k: 2072	n:60000
Cons ci ratio: 1.889592e-02	ci left: 4.137162e-01	ci right 4.216251e-01	k: 25060	n:60000
KS ci ratio: 1.368008e-01	ci left: 1.257576e-02	ci right 1.443841e-02	k: 809	n:60000
ALDOB   60000 perm   14 sec   (4240 perm/sec)   p_kst 1.348333e-02   p_cons 4.176667e-01   p_joint 3.453333e-02

Joint ci ratio: 8.955294e-02	ci left: 2.544843e-02	ci right 2.784816e-02	k: 1864	n:70000
Cons ci ratio: 1.790587e-02	ci left: 4.027583e-01	ci right 4.100495e-01	k: 28448	n:70000
KS ci ratio: 1.269941e-01	ci left: 1.257514e-02	ci right 1.429411e-02	k: 939	n:70000
ALDOB   70000 perm   17 sec   (4163 perm/sec)   p_kst 1.341429e-02   p_cons 4.064000e-01   p_joint 2.662857e-02

Joint ci ratio: 8.828659e-02	ci left: 2.298717e-02	ci right 2.512253e-02	k: 1923	n:80000
Cons ci ratio: 1.672692e-02	ci left: 4.036428e-01	ci right 4.104639e-01	k: 32564	n:80000
KS ci ratio: 1.183621e-01	ci left: 1.272388e-02	ci right 1.433668e-02	k: 1081	n:80000
ALDOB   80000 perm   20 sec   (4081 perm/sec)   p_kst 1.351250e-02   p_cons 4.070500e-01   p_joint 2.403750e-02

Joint ci ratio: 8.043517e-02	ci left: 2.467595e-02	ci right 2.675478e-02	k: 2313	n:90000
Cons ci ratio: 1.577923e-02	ci left: 4.035659e-01	ci right 4.099956e-01	k: 36610	n:90000
KS ci ratio: 1.124982e-01	ci left: 1.256174e-02	ci right 1.406987e-02	k: 1197	n:90000
ALDOB   90000 perm   22 sec   (4005 perm/sec)   p_kst 1.330000e-02   p_cons 4.067778e-01   p_joint 2.570000e-02

Joint ci ratio: 7.541087e-02	ci left: 2.531692e-02	ci right 2.731068e-02	k: 2630	n:100000
Cons ci ratio: 1.494993e-02	ci left: 4.043623e-01	ci right 4.104630e-01	k: 40741	n:100000
KS ci ratio: 1.045615e-01	ci left: 1.313478e-02	ci right 1.459361e-02	k: 1385	n:100000
ALDOB   100000 perm   25 sec   (3934 perm/sec)   p_kst 1.385000e-02   p_cons 4.074100e-01   p_joint 2.630000e-02

Joint ci ratio: 1.005211e-01	ci left: 1.295044e-02	ci right 1.432993e-02	k: 1499	n:110000
Cons ci ratio: 1.393604e-02	ci left: 4.154371e-01	ci right 4.212763e-01	k: 46019	n:110000
KS ci ratio: 1.000153e-01	ci left: 1.308343e-02	ci right 1.446966e-02	k: 1514	n:110000
ALDOB   110000 perm   28 sec   (3869 perm/sec)   p_kst 1.376364e-02   p_cons 4.183545e-01   p_joint 1.362727e-02

Joint ci ratio: 9.331784e-02	ci left: 1.381495e-02	ci right 1.517532e-02	k: 1738	n:120000
Cons ci ratio: 1.334997e-02	ci left: 4.152988e-01	ci right 4.208885e-01	k: 50171	n:120000
KS ci ratio: 9.882572e-02	ci left: 1.230169e-02	ci right 1.358868e-02	k: 1552	n:120000
ALDOB   120000 perm   32 sec   (3805 perm/sec)   p_kst 1.293333e-02   p_cons 4.180917e-01   p_joint 1.448333e-02

Outputting figure to mutsig2_images.part000000000006/ALDOB.4_1127_120000_0.012933_0.41809_0.014483.png
                gene_name: ALDOB
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 46 percent done.
ALOX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
ALOX15   10000 perm   2 sec   (5050 perm/sec)   p_kst 5.218000e-01   p_cons 3.400000e-03   p_joint 1.410000e-02

Joint ci ratio: 2.238557e-01	ci left: 1.340842e-02	ci right 1.683467e-02	k: 301	n:20000
Cons ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
KS ci ratio: 2.573365e-02	ci left: 5.301096e-01	ci right 5.439797e-01	k: 10741	n:20000
ALOX15   20000 perm   4 sec   (4565 perm/sec)   p_kst 5.370500e-01   p_cons 3.600000e-03   p_joint 1.505000e-02

Joint ci ratio: 1.927416e-01	ci left: 1.228821e-02	ci right 1.494055e-02	k: 407	n:30000
Cons ci ratio: 3.664373e-01	ci left: 3.105244e-03	ci right 4.526846e-03	k: 113	n:30000
KS ci ratio: 2.136443e-02	ci left: 5.230989e-01	ci right 5.344289e-01	k: 15863	n:30000
ALOX15   30000 perm   7 sec   (4334 perm/sec)   p_kst 5.287667e-01   p_cons 3.766667e-03   p_joint 1.356667e-02

Joint ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
Cons ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
KS ci ratio: 1.854199e-02	ci left: 5.227933e-01	ci right 5.326027e-01	k: 21108	n:40000
ALOX15   40000 perm   10 sec   (4201 perm/sec)   p_kst 5.277000e-01   p_cons 3.800000e-03   p_joint 2.150000e-02

Joint ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
Cons ci ratio: 2.838430e-01	ci left: 3.261100e-03	ci right 4.357749e-03	k: 189	n:50000
KS ci ratio: 1.655532e-02	ci left: 5.241930e-01	ci right 5.329637e-01	k: 26429	n:50000
ALOX15   50000 perm   12 sec   (4096 perm/sec)   p_kst 5.285800e-01   p_cons 3.780000e-03   p_joint 1.780000e-02

Joint ci ratio: 1.085649e-01	ci left: 2.011091e-02	ci right 2.243571e-02	k: 1275	n:60000
Cons ci ratio: 2.620122e-01	ci left: 3.229993e-03	ci right 4.218966e-03	k: 222	n:60000
KS ci ratio: 1.511587e-02	ci left: 5.244794e-01	ci right 5.324845e-01	k: 31709	n:60000
ALOX15   60000 perm   15 sec   (4007 perm/sec)   p_kst 5.284833e-01   p_cons 3.700000e-03   p_joint 2.125000e-02

Joint ci ratio: 9.678005e-02	ci left: 2.179060e-02	ci right 2.402062e-02	k: 1602	n:70000
Cons ci ratio: 2.417231e-01	ci left: 3.290604e-03	ci right 4.208431e-03	k: 261	n:70000
KS ci ratio: 1.398453e-02	ci left: 5.251368e-01	ci right 5.325466e-01	k: 37019	n:70000
ALOX15   70000 perm   18 sec   (3928 perm/sec)   p_kst 5.288429e-01   p_cons 3.728571e-03   p_joint 2.288571e-02

Joint ci ratio: 9.457063e-02	ci left: 2.002978e-02	ci right 2.203017e-02	k: 1681	n:80000
Cons ci ratio: 2.258952e-01	ci left: 3.326488e-03	ci right 4.185118e-03	k: 299	n:80000
KS ci ratio: 1.307659e-02	ci left: 5.255588e-01	ci right 5.324891e-01	k: 42322	n:80000
ALOX15   80000 perm   21 sec   (3856 perm/sec)   p_kst 5.290250e-01   p_cons 3.737500e-03   p_joint 2.101250e-02

Joint ci ratio: 1.194622e-01	ci left: 1.111551e-02	ci right 1.253844e-02	k: 1063	n:90000
Cons ci ratio: 2.125027e-01	ci left: 3.366447e-03	ci right 4.177165e-03	k: 338	n:90000
KS ci ratio: 1.242315e-02	ci left: 5.219534e-01	ci right 5.284894e-01	k: 47270	n:90000
ALOX15   90000 perm   24 sec   (3785 perm/sec)   p_kst 5.252222e-01   p_cons 3.755556e-03   p_joint 1.181111e-02

Joint ci ratio: 1.153339e-01	ci left: 1.076094e-02	ci right 1.208763e-02	k: 1141	n:100000
Cons ci ratio: 1.993958e-01	ci left: 3.466117e-03	ci right 4.243097e-03	k: 384	n:100000
KS ci ratio: 1.178122e-02	ci left: 5.223093e-01	ci right 5.285092e-01	k: 52541	n:100000
ALOX15   100000 perm   27 sec   (3722 perm/sec)   p_kst 5.254100e-01   p_cons 3.840000e-03   p_joint 1.141000e-02

Joint ci ratio: 1.014857e-01	ci left: 1.270224e-02	ci right 1.406905e-02	k: 1471	n:110000
Cons ci ratio: 1.886685e-01	ci left: 3.540258e-03	ci right 4.286273e-03	k: 429	n:110000
KS ci ratio: 1.122643e-02	ci left: 5.227440e-01	ci right 5.286547e-01	k: 57827	n:110000
ALOX15   110000 perm   30 sec   (3660 perm/sec)   p_kst 5.257000e-01   p_cons 3.900000e-03   p_joint 1.337273e-02

Joint ci ratio: 8.643779e-02	ci left: 1.612114e-02	ci right 1.758567e-02	k: 2021	n:120000
Cons ci ratio: 1.698968e-01	ci left: 4.041355e-03	ci right 4.799569e-03	k: 529	n:120000
KS ci ratio: 1.077098e-02	ci left: 5.218281e-01	ci right 5.274874e-01	k: 62959	n:120000
ALOX15   120000 perm   33 sec   (3595 perm/sec)   p_kst 5.246583e-01   p_cons 4.408333e-03   p_joint 1.684167e-02

Joint ci ratio: 8.356237e-02	ci left: 1.595008e-02	ci right 1.734852e-02	k: 2163	n:130000
Cons ci ratio: 1.624050e-01	ci left: 4.099119e-03	ci right 4.830948e-03	k: 579	n:130000
KS ci ratio: 1.036273e-02	ci left: 5.212500e-01	ci right 5.266874e-01	k: 68116	n:130000
ALOX15   130000 perm   37 sec   (3538 perm/sec)   p_kst 5.239692e-01   p_cons 4.453846e-03   p_joint 1.663846e-02

Joint ci ratio: 8.122490e-02	ci left: 1.569916e-02	ci right 1.703526e-02	k: 2290	n:140000
Cons ci ratio: 1.570814e-01	ci left: 4.080616e-03	ci right 4.783010e-03	k: 619	n:140000
KS ci ratio: 9.994182e-03	ci left: 5.209298e-01	ci right 5.261693e-01	k: 73297	n:140000
ALOX15   140000 perm   40 sec   (3484 perm/sec)   p_kst 5.235500e-01   p_cons 4.421429e-03   p_joint 1.635714e-02

Joint ci ratio: 7.285758e-02	ci left: 1.824305e-02	ci right 1.962896e-02	k: 2839	n:150000
Cons ci ratio: 1.516732e-01	ci left: 4.096990e-03	ci right 4.775718e-03	k: 664	n:150000
KS ci ratio: 9.657820e-03	ci left: 5.208887e-01	ci right 5.259504e-01	k: 78513	n:150000
ALOX15   150000 perm   44 sec   (3428 perm/sec)   p_kst 5.234200e-01   p_cons 4.426667e-03   p_joint 1.892667e-02

Joint ci ratio: 7.088269e-02	ci left: 1.809098e-02	ci right 1.942654e-02	k: 3000	n:160000
Cons ci ratio: 1.466840e-01	ci left: 4.117702e-03	ci right 4.775454e-03	k: 710	n:160000
KS ci ratio: 9.348245e-03	ci left: 5.211242e-01	ci right 5.260249e-01	k: 83772	n:160000
ALOX15   160000 perm   47 sec   (3373 perm/sec)   p_kst 5.235750e-01   p_cons 4.437500e-03   p_joint 1.875000e-02

Joint ci ratio: 6.980608e-02	ci left: 1.757563e-02	ci right 1.885264e-02	k: 3095	n:170000
Cons ci ratio: 1.418747e-01	ci left: 4.153321e-03	ci right 4.793171e-03	k: 759	n:170000
KS ci ratio: 9.065259e-03	ci left: 5.214108e-01	ci right 5.261649e-01	k: 89044	n:170000
ALOX15   170000 perm   51 sec   (3320 perm/sec)   p_kst 5.237882e-01   p_cons 4.464706e-03   p_joint 1.820588e-02

Joint ci ratio: 6.234006e-02	ci left: 2.082394e-02	ci right 2.216931e-02	k: 3868	n:180000
Cons ci ratio: 1.369157e-01	ci left: 4.222854e-03	ci right 4.848823e-03	k: 815	n:180000
KS ci ratio: 8.804348e-03	ci left: 5.217897e-01	ci right 5.264095e-01	k: 94338	n:180000
ALOX15   180000 perm   55 sec   (3269 perm/sec)   p_kst 5.241000e-01   p_cons 4.527778e-03   p_joint 2.148889e-02

Joint ci ratio: 6.203326e-02	ci left: 1.994528e-02	ci right 2.122731e-02	k: 3910	n:190000
Cons ci ratio: 1.338375e-01	ci left: 4.193821e-03	ci right 4.800397e-03	k: 853	n:190000
KS ci ratio: 8.559947e-03	ci left: 5.224094e-01	ci right 5.269056e-01	k: 99685	n:190000
ALOX15   190000 perm   59 sec   (3213 perm/sec)   p_kst 5.246579e-01   p_cons 4.489474e-03   p_joint 2.057895e-02

Joint ci ratio: 6.222833e-02	ci left: 1.884923e-02	ci right 2.006475e-02	k: 3890	n:200000
Cons ci ratio: 1.304448e-01	ci left: 4.201693e-03	ci right 4.792810e-03	k: 898	n:200000
KS ci ratio: 8.345431e-03	ci left: 5.223335e-01	ci right 5.267158e-01	k: 104905	n:200000
ALOX15   200000 perm   63 sec   (3167 perm/sec)   p_kst 5.245250e-01   p_cons 4.490000e-03   p_joint 1.945000e-02

Joint ci ratio: 6.099218e-02	ci left: 1.870177e-02	ci right 1.988298e-02	k: 4050	n:210000
Cons ci ratio: 1.274334e-01	ci left: 4.199770e-03	ci right 4.775944e-03	k: 941	n:210000
KS ci ratio: 8.146662e-03	ci left: 5.222423e-01	ci right 5.265189e-01	k: 110120	n:210000
ALOX15   210000 perm   67 sec   (3126 perm/sec)   p_kst 5.243810e-01   p_cons 4.480952e-03   p_joint 1.928571e-02

Joint ci ratio: 5.984129e-02	ci left: 1.855898e-02	ci right 1.970828e-02	k: 4208	n:220000
Cons ci ratio: 1.246214e-01	ci left: 4.198164e-03	ci right 4.760470e-03	k: 984	n:220000
KS ci ratio: 7.955068e-03	ci left: 5.225606e-01	ci right 5.267387e-01	k: 115423	n:220000
ALOX15   220000 perm   71 sec   (3085 perm/sec)   p_kst 5.246500e-01   p_cons 4.472727e-03   p_joint 1.912727e-02

Joint ci ratio: 6.002667e-02	ci left: 1.765760e-02	ci right 1.875459e-02	k: 4186	n:230000
Cons ci ratio: 1.215726e-01	ci left: 4.226336e-03	ci right 4.777570e-03	k: 1034	n:230000
KS ci ratio: 7.783434e-03	ci left: 5.224000e-01	ci right 5.264863e-01	k: 120622	n:230000
ALOX15   230000 perm   76 sec   (3043 perm/sec)   p_kst 5.244435e-01   p_cons 4.495652e-03   p_joint 1.820000e-02

Joint ci ratio: 6.150877e-02	ci left: 1.612953e-02	ci right 1.715719e-02	k: 3993	n:240000
Cons ci ratio: 1.184632e-01	ci left: 4.272532e-03	ci right 4.814541e-03	k: 1089	n:240000
KS ci ratio: 7.617674e-03	ci left: 5.225663e-01	ci right 5.265664e-01	k: 125896	n:240000
ALOX15   240000 perm   80 sec   (3003 perm/sec)   p_kst 5.245667e-01   p_cons 4.537500e-03   p_joint 1.663750e-02

Joint ci ratio: 6.029123e-02	ci left: 1.612642e-02	ci right 1.713284e-02	k: 4156	n:250000
Cons ci ratio: 1.168171e-01	ci left: 4.221975e-03	ci right 4.749614e-03	k: 1120	n:250000
KS ci ratio: 7.465184e-03	ci left: 5.225121e-01	ci right 5.264313e-01	k: 131118	n:250000
ALOX15   250000 perm   84 sec   (2964 perm/sec)   p_kst 5.244720e-01   p_cons 4.480000e-03   p_joint 1.662400e-02

Joint ci ratio: 6.155663e-02	ci left: 1.488471e-02	ci right 1.583383e-02	k: 3992	n:260000
Cons ci ratio: 1.150373e-01	ci left: 4.190299e-03	ci right 4.705459e-03	k: 1155	n:260000
KS ci ratio: 7.318903e-03	ci left: 5.226398e-01	ci right 5.264828e-01	k: 136386	n:260000
ALOX15   260000 perm   89 sec   (2925 perm/sec)   p_kst 5.245615e-01   p_cons 4.442308e-03   p_joint 1.535385e-02

Joint ci ratio: 6.151970e-02	ci left: 1.435883e-02	ci right 1.527385e-02	k: 3999	n:270000
Cons ci ratio: 1.131457e-01	ci left: 4.175423e-03	ci right 4.679750e-03	k: 1194	n:270000
KS ci ratio: 7.182283e-03	ci left: 5.226623e-01	ci right 5.264334e-01	k: 141628	n:270000
ALOX15   270000 perm   93 sec   (2889 perm/sec)   p_kst 5.245481e-01   p_cons 4.422222e-03   p_joint 1.481111e-02

Joint ci ratio: 6.115731e-02	ci left: 1.401826e-02	ci right 1.490612e-02	k: 4048	n:280000
Cons ci ratio: 1.109837e-01	ci left: 4.189455e-03	ci right 4.685174e-03	k: 1241	n:280000
KS ci ratio: 7.053948e-03	ci left: 5.226196e-01	ci right 5.263227e-01	k: 146852	n:280000
ALOX15   280000 perm   98 sec   (2853 perm/sec)   p_kst 5.244714e-01   p_cons 4.432143e-03   p_joint 1.445714e-02

Joint ci ratio: 6.110395e-02	ci left: 1.356534e-02	ci right 1.442373e-02	k: 4057	n:290000
Cons ci ratio: 1.090260e-01	ci left: 4.195895e-03	ci right 4.683056e-03	k: 1286	n:290000
KS ci ratio: 6.930914e-03	ci left: 5.226770e-01	ci right 5.263156e-01	k: 152104	n:290000
ALOX15   290000 perm   103 sec   (2818 perm/sec)   p_kst 5.244966e-01   p_cons 4.434483e-03   p_joint 1.398966e-02

Joint ci ratio: 6.125627e-02	ci left: 1.305397e-02	ci right 1.388213e-02	k: 4039	n:300000
Cons ci ratio: 1.069268e-01	ci left: 4.221443e-03	ci right 4.701540e-03	k: 1337	n:300000
KS ci ratio: 6.814738e-03	ci left: 5.226844e-01	ci right 5.262618e-01	k: 157342	n:300000
ALOX15   300000 perm   108 sec   (2784 perm/sec)   p_kst 5.244733e-01   p_cons 4.456667e-03   p_joint 1.346333e-02

Joint ci ratio: 6.113192e-02	ci left: 1.268998e-02	ci right 1.349336e-02	k: 4057	n:310000
Cons ci ratio: 1.049823e-01	ci left: 4.242286e-03	ci right 4.715438e-03	k: 1387	n:310000
KS ci ratio: 6.702654e-03	ci left: 5.228079e-01	ci right 5.263271e-01	k: 162616	n:310000
ALOX15   310000 perm   113 sec   (2750 perm/sec)   p_kst 5.245677e-01   p_cons 4.474194e-03   p_joint 1.308710e-02

Joint ci ratio: 6.047640e-02	ci left: 1.256729e-02	ci right 1.335407e-02	k: 4146	n:320000
Cons ci ratio: 1.033933e-01	ci left: 4.240588e-03	ci right 4.705956e-03	k: 1430	n:320000
KS ci ratio: 6.596420e-03	ci left: 5.228867e-01	ci right 5.263504e-01	k: 167878	n:320000
ALOX15   320000 perm   118 sec   (2717 perm/sec)   p_kst 5.246188e-01   p_cons 4.468750e-03   p_joint 1.295625e-02

Joint ci ratio: 6.118704e-02	ci left: 1.190881e-02	ci right 1.266343e-02	k: 4053	n:330000
Cons ci ratio: 1.019438e-01	ci left: 4.233136e-03	ci right 4.690784e-03	k: 1471	n:330000
KS ci ratio: 6.495635e-03	ci left: 5.229187e-01	ci right 5.263294e-01	k: 173126	n:330000
ALOX15   330000 perm   123 sec   (2685 perm/sec)   p_kst 5.246242e-01   p_cons 4.457576e-03   p_joint 1.228182e-02

Joint ci ratio: 6.100813e-02	ci left: 1.163090e-02	ci right 1.236569e-02	k: 4078	n:340000
Cons ci ratio: 1.003539e-01	ci left: 4.243372e-03	ci right 4.694550e-03	k: 1518	n:340000
KS ci ratio: 6.398955e-03	ci left: 5.229785e-01	ci right 5.263387e-01	k: 178384	n:340000
ALOX15   340000 perm   128 sec   (2654 perm/sec)   p_kst 5.246588e-01   p_cons 4.464706e-03   p_joint 1.199412e-02

Joint ci ratio: 5.829563e-02	ci left: 1.238233e-02	ci right 1.312863e-02	k: 4463	n:350000
Cons ci ratio: 9.912267e-02	ci left: 4.227994e-03	ci right 4.671701e-03	k: 1556	n:350000
KS ci ratio: 6.333614e-03	ci left: 5.208922e-01	ci right 5.242046e-01	k: 182892	n:350000
ALOX15   350000 perm   133 sec   (2623 perm/sec)   p_kst 5.225486e-01   p_cons 4.445714e-03   p_joint 1.275143e-02

Outputting figure to mutsig2_images.part000000000006/ALOX15.4_2045_350000_0.52255_0.0044457_0.012751.png
                gene_name: ALOX15
               theta_stop: 0.099 
                    nperm: 350000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.0044 
      ci_cons_bounds_left: 0.0042 
     ci_cons_bounds_right: 0.0047 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 48 percent done.
ALOXE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
Cons ci ratio: 2.841575e-02	ci left: 6.460919e-01	ci right 6.648174e-01	k: 6555	n:10000
KS ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
ALOXE3   10000 perm   2 sec   (5218 perm/sec)   p_kst 5.418000e-01   p_cons 6.555000e-01   p_joint 6.661000e-01

Outputting figure to mutsig2_images.part000000000006/ALOXE3.4_2596_10000_0.5418_0.6555_0.6661.png
                gene_name: ALOXE3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 49 percent done.
AKR1E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
KS ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
AKR1E2   10000 perm   2 sec   (6065 perm/sec)   p_kst 5.540000e-01   p_cons 3.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKR1E2.3_1003_10000_0.554_0.3327_1.png
                gene_name: AKR1E2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
AKR7A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.656605e-02	ci left: 8.413215e-01	ci right 8.554749e-01	k: 8485	n:10000
Cons ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
KS ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
AKR7A3   10000 perm   2 sec   (6305 perm/sec)   p_kst 7.125000e-01   p_cons 5.671000e-01   p_joint 8.485000e-01

Outputting figure to mutsig2_images.part000000000006/AKR7A3.3_1024_10000_0.7125_0.5671_0.8485.png
                gene_name: AKR7A3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 52 percent done.
ALAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
Cons ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
KS ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
ALAS1   10000 perm   2 sec   (5817 perm/sec)   p_kst 6.088000e-01   p_cons 5.507000e-01   p_joint 9.835000e-01

Outputting figure to mutsig2_images.part000000000006/ALAS1.3_1963_10000_0.6088_0.5507_0.9835.png
                gene_name: ALAS1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 54 percent done.
ALCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
Cons ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
KS ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
ALCAM   10000 perm   2 sec   (5663 perm/sec)   p_kst 1.190000e-01   p_cons 1.805000e-01   p_joint 2.277000e-01

Joint ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
Cons ci ratio: 5.850798e-02	ci left: 1.779097e-01	ci right 1.886826e-01	k: 3665	n:20000
KS ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
ALCAM   20000 perm   4 sec   (4929 perm/sec)   p_kst 1.159000e-01   p_cons 1.832500e-01   p_joint 1.794000e-01

Outputting figure to mutsig2_images.part000000000006/ALCAM.3_1812_20000_0.1159_0.18325_0.1794.png
                gene_name: ALCAM
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 56 percent done.
ALDH16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
Cons ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KS ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
ALDH16A1   10000 perm   2 sec   (5323 perm/sec)   p_kst 7.847000e-01   p_cons 1.634000e-01   p_joint 5.019000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH16A1.3_2477_10000_0.7847_0.1634_0.5019.png
                gene_name: ALDH16A1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 57 percent done.
ALDH1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
Cons ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
KS ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
ALDH1A1   10000 perm   2 sec   (6063 perm/sec)   p_kst 1.375000e-01   p_cons 3.237000e-01   p_joint 2.149000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A1.3_1558_10000_0.1375_0.3237_0.2149.png
                gene_name: ALDH1A1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 59 percent done.
ALDH4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 2.990320e-02	ci left: 6.225610e-01	ci right 6.415620e-01	k: 6321	n:10000
ALDH4A1   10000 perm   2 sec   (5622 perm/sec)   p_kst 6.321000e-01   p_cons 9.864000e-01   p_joint 8.660000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH4A1.3_1752_10000_0.6321_0.9864_0.866.png
                gene_name: ALDH4A1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 61 percent done.
ALDH9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
Cons ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
KS ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
ALDH9A1   10000 perm   2 sec   (5760 perm/sec)   p_kst 4.387000e-01   p_cons 2.232000e-01   p_joint 4.745000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH9A1.3_1601_10000_0.4387_0.2232_0.4745.png
                gene_name: ALDH9A1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
ALG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
Cons ci ratio: 5.370375e-02	ci left: 3.381626e-01	ci right 3.569262e-01	k: 3475	n:10000
KS ci ratio: 2.988391e-02	ci left: 6.228625e-01	ci right 6.418603e-01	k: 6324	n:10000
ALG9   10000 perm   2 sec   (5581 perm/sec)   p_kst 6.324000e-01   p_cons 3.475000e-01   p_joint 6.501000e-01

Outputting figure to mutsig2_images.part000000000006/ALG9.3_1918_10000_0.6324_0.3475_0.6501.png
                gene_name: ALG9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 64 percent done.
ALOX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
KS ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
ALOX12   10000 perm   2 sec   (5710 perm/sec)   p_kst 5.682000e-01   p_cons 3.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALOX12.3_2048_10000_0.5682_0.3911_1.png
                gene_name: ALOX12
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
AKR1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.457434e-02	ci left: 8.720385e-01	ci right 8.849402e-01	k: 8786	n:10000
KS ci ratio: 1.533594e-02	ci left: 8.604938e-01	ci right 8.738915e-01	k: 8673	n:10000
AKR1B1   10000 perm   2 sec   (6468 perm/sec)   p_kst 8.673000e-01   p_cons 8.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKR1B1.2_991_10000_0.8673_0.8786_1.png
                gene_name: AKR1B1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
AKR1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
Cons ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
AKR1C1   10000 perm   2 sec   (6285 perm/sec)   p_kst 3.093000e-01   p_cons 4.411000e-01   p_joint 7.890000e-01

Outputting figure to mutsig2_images.part000000000006/AKR1C1.2_1008_10000_0.3093_0.4411_0.789.png
                gene_name: AKR1C1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 69 percent done.
AKR1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
Cons ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
AKR1C2   10000 perm   2 sec   (6371 perm/sec)   p_kst 7.280000e-02   p_cons 5.142000e-01   p_joint 1.748000e-01

Joint ci ratio: 2.800905e-02	ci left: 4.877970e-01	ci right 5.017045e-01	k: 9895	n:20000
Cons ci ratio: 2.682730e-02	ci left: 5.093472e-01	ci right 5.232480e-01	k: 10326	n:20000
KS ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
AKR1C2   20000 perm   4 sec   (5578 perm/sec)   p_kst 7.275000e-02   p_cons 5.163000e-01   p_joint 4.947500e-01

Outputting figure to mutsig2_images.part000000000006/AKR1C2.2_1063_20000_0.07275_0.5163_0.49475.png
                gene_name: AKR1C2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 70 percent done.
AKR1C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
Cons ci ratio: 2.892069e-02	ci left: 6.380444e-01	ci right 6.568696e-01	k: 6475	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
AKR1C3   10000 perm   2 sec   (6504 perm/sec)   p_kst 1.190000e-02   p_cons 6.475000e-01   p_joint 6.750000e-02

Joint ci ratio: 6.059246e-02	ci left: 1.677807e-01	ci right 1.783146e-01	k: 3460	n:20000
Cons ci ratio: 2.030998e-02	ci left: 6.439960e-01	ci right 6.572602e-01	k: 13013	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
AKR1C3   20000 perm   4 sec   (5601 perm/sec)   p_kst 1.220000e-02   p_cons 6.506500e-01   p_joint 1.730000e-01

Joint ci ratio: 3.653050e-02	ci left: 2.722725e-01	ci right 2.824373e-01	k: 8320	n:30000
Cons ci ratio: 1.663862e-02	ci left: 6.437020e-01	ci right 6.545357e-01	k: 19474	n:30000
KS ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
AKR1C3   30000 perm   6 sec   (5287 perm/sec)   p_kst 1.183333e-02   p_cons 6.491333e-01   p_joint 2.773333e-01

Joint ci ratio: 4.916635e-02	ci left: 1.337433e-01	ci right 1.405095e-01	k: 5484	n:40000
Cons ci ratio: 1.442249e-02	ci left: 6.440237e-01	ci right 6.534047e-01	k: 25949	n:40000
KS ci ratio: 1.765454e-01	ci left: 1.109941e-02	ci right 1.327227e-02	k: 486	n:40000
AKR1C3   40000 perm   8 sec   (5109 perm/sec)   p_kst 1.215000e-02   p_cons 6.487250e-01   p_joint 1.371000e-01

Joint ci ratio: 6.546042e-02	ci left: 6.472521e-02	ci right 6.912523e-02	k: 3345	n:50000
Cons ci ratio: 1.286272e-02	ci left: 6.458407e-01	ci right 6.542218e-01	k: 32502	n:50000
KS ci ratio: 1.600161e-01	ci left: 1.091033e-02	ci right 1.282697e-02	k: 592	n:50000
AKR1C3   50000 perm   10 sec   (4949 perm/sec)   p_kst 1.184000e-02   p_cons 6.500400e-01   p_joint 6.690000e-02

Joint ci ratio: 6.149190e-02	ci left: 6.147943e-02	ci right 6.539626e-02	k: 3805	n:60000
Cons ci ratio: 1.173791e-02	ci left: 6.463685e-01	ci right 6.540170e-01	k: 39012	n:60000
KS ci ratio: 1.467646e-01	ci left: 1.088705e-02	ci right 1.262732e-02	k: 704	n:60000
AKR1C3   60000 perm   12 sec   (4816 perm/sec)   p_kst 1.173333e-02   p_cons 6.502000e-01   p_joint 6.341667e-02

Joint ci ratio: 5.236209e-02	ci left: 7.218426e-02	ci right 7.607970e-02	k: 5188	n:70000
Cons ci ratio: 1.086483e-02	ci left: 6.467540e-01	ci right 6.538335e-01	k: 45521	n:70000
KS ci ratio: 1.349265e-01	ci left: 1.110985e-02	ci right 1.273099e-02	k: 833	n:70000
AKR1C3   70000 perm   15 sec   (4699 perm/sec)   p_kst 1.190000e-02   p_cons 6.503000e-01   p_joint 7.411429e-02

Joint ci ratio: 3.960164e-02	ci left: 1.069476e-01	ci right 1.112808e-01	k: 8728	n:80000
Cons ci ratio: 1.012963e-02	ci left: 6.484871e-01	ci right 6.551019e-01	k: 52144	n:80000
KS ci ratio: 1.257553e-01	ci left: 1.124485e-02	ci right 1.276584e-02	k: 959	n:80000
AKR1C3   80000 perm   17 sec   (4596 perm/sec)   p_kst 1.198750e-02   p_cons 6.518000e-01   p_joint 1.091000e-01

Joint ci ratio: 3.528439e-02	ci left: 1.184681e-01	ci right 1.227342e-01	k: 10853	n:90000
Cons ci ratio: 9.529525e-03	ci left: 6.496681e-01	ci right 6.558998e-01	k: 58751	n:90000
KS ci ratio: 1.175214e-01	ci left: 1.149300e-02	ci right 1.293870e-02	k: 1098	n:90000
AKR1C3   90000 perm   20 sec   (4479 perm/sec)   p_kst 1.220000e-02   p_cons 6.527889e-01   p_joint 1.205889e-01

Joint ci ratio: 4.306667e-02	ci left: 7.485991e-02	ci right 7.816471e-02	k: 7650	n:100000
Cons ci ratio: 9.028923e-03	ci left: 6.504110e-01	ci right 6.563201e-01	k: 65337	n:100000
KS ci ratio: 1.119608e-01	ci left: 1.143154e-02	ci right 1.279698e-02	k: 1210	n:100000
AKR1C3   100000 perm   23 sec   (4392 perm/sec)   p_kst 1.210000e-02   p_cons 6.533700e-01   p_joint 7.650000e-02

Joint ci ratio: 4.199951e-02	ci left: 7.183855e-02	ci right 7.492944e-02	k: 8071	n:110000
Cons ci ratio: 8.599886e-03	ci left: 6.510164e-01	ci right 6.566483e-01	k: 71922	n:110000
KS ci ratio: 1.071215e-01	ci left: 1.138259e-02	ci right 1.267970e-02	k: 1322	n:110000
AKR1C3   110000 perm   26 sec   (4305 perm/sec)   p_kst 1.201818e-02   p_cons 6.538364e-01   p_joint 7.337273e-02

Joint ci ratio: 3.917176e-02	ci left: 7.551423e-02	ci right 7.853958e-02	k: 9242	n:120000
Cons ci ratio: 8.237310e-03	ci left: 6.509417e-01	ci right 6.563342e-01	k: 78437	n:120000
KS ci ratio: 1.019293e-01	ci left: 1.155403e-02	ci right 1.280304e-02	k: 1460	n:120000
AKR1C3   120000 perm   28 sec   (4217 perm/sec)   p_kst 1.216667e-02   p_cons 6.536417e-01   p_joint 7.701667e-02

Joint ci ratio: 4.372903e-02	ci left: 5.694096e-02	ci right 5.949418e-02	k: 7567	n:130000
Cons ci ratio: 7.924567e-03	ci left: 6.504514e-01	ci right 6.556341e-01	k: 84896	n:130000
KS ci ratio: 9.779773e-02	ci left: 1.161031e-02	ci right 1.281160e-02	k: 1586	n:130000
AKR1C3   130000 perm   31 sec   (4136 perm/sec)   p_kst 1.220000e-02   p_cons 6.530462e-01   p_joint 5.820769e-02

Outputting figure to mutsig2_images.part000000000006/AKR1C3.2_1008_130000_0.0122_0.65305_0.058208.png
                gene_name: AKR1C3
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.059 

Current progress: 72 percent done.
AKR7A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
KS ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
AKR7A2   10000 perm   2 sec   (6421 perm/sec)   p_kst 2.648000e-01   p_cons 3.761000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKR7A2.2_1108_10000_0.2648_0.3761_1.png
                gene_name: AKR7A2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
AKT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
Cons ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
KS ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
AKT2   10000 perm   2 sec   (6156 perm/sec)   p_kst 7.617000e-01   p_cons 7.773000e-01   p_joint 8.137000e-01

Outputting figure to mutsig2_images.part000000000006/AKT2.2_1498_10000_0.7617_0.7773_0.8137.png
                gene_name: AKT2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 75 percent done.
ALAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
ALAD   10000 perm   2 sec   (6594 perm/sec)   p_kst 3.508000e-01   p_cons 7.472000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALAD.2_1037_10000_0.3508_0.7472_1.png
                gene_name: ALAD
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ALDH1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
Cons ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KS ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
ALDH1A3   10000 perm   2 sec   (5994 perm/sec)   p_kst 7.017000e-01   p_cons 2.338000e-01   p_joint 9.578000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A3.2_1591_10000_0.7017_0.2338_0.9578.png
                gene_name: ALDH1A3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 79 percent done.
ALDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
ALDH2   10000 perm   2 sec   (6104 perm/sec)   p_kst 1.711000e-01   p_cons 7.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH2.2_1606_10000_0.1711_0.7591_1.png
                gene_name: ALDH2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ALDH3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
KS ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
ALDH3A1   10000 perm   2 sec   (6639 perm/sec)   p_kst 8.549000e-01   p_cons 6.792000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH3A1.2_1402_10000_0.8549_0.6792_1.png
                gene_name: ALDH3A1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ALDH3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
KS ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
ALDH3A2   10000 perm   2 sec   (6171 perm/sec)   p_kst 8.137000e-01   p_cons 7.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH3A2.2_1586_10000_0.8137_0.7047_1.png
                gene_name: ALDH3A2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ALDH5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 1.575937e-02	ci left: 8.539624e-01	ci right 8.676267e-01	k: 8609	n:10000
ALDH5A1   10000 perm   2 sec   (5885 perm/sec)   p_kst 8.609000e-01   p_cons 5.055000e-01   p_joint 9.692000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH5A1.2_1691_10000_0.8609_0.5055_0.9692.png
                gene_name: ALDH5A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 85 percent done.
ALDOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
Cons ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
ALDOA   10000 perm   1 sec   (6741 perm/sec)   p_kst 2.074000e-01   p_cons 7.649000e-01   p_joint 3.371000e-01

Outputting figure to mutsig2_images.part000000000006/ALDOA.2_1127_10000_0.2074_0.7649_0.3371.png
                gene_name: ALDOA
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 87 percent done.
ALG12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 5.666090e-02	ci left: 3.144328e-01	ci right 3.328701e-01	k: 3236	n:10000
KS ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
ALG12   10000 perm   2 sec   (6484 perm/sec)   p_kst 4.141000e-01   p_cons 3.236000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000006/ALG12.2_1503_10000_0.4141_0.3236_0.4145.png
                gene_name: ALG12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 89 percent done.
ALG14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
ALG14   10000 perm   2 sec   (6623 perm/sec)   p_kst 2.175000e-01   p_cons 5.432000e-01   p_joint 2.687000e-01

Outputting figure to mutsig2_images.part000000000006/ALG14.2_667_10000_0.2175_0.5432_0.2687.png
                gene_name: ALG14
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 90 percent done.
ALG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
Cons ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
ALG8   10000 perm   2 sec   (6021 perm/sec)   p_kst 3.429000e-01   p_cons 3.641000e-01   p_joint 9.408000e-01

Outputting figure to mutsig2_images.part000000000006/ALG8.2_1692_10000_0.3429_0.3641_0.9408.png
                gene_name: ALG8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 92 percent done.
ALKBH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
KS ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
ALKBH1   10000 perm   2 sec   (6386 perm/sec)   p_kst 9.729000e-01   p_cons 7.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALKBH1.2_1194_10000_0.9729_0.7931_1.png
                gene_name: ALKBH1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ALKBH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
ALKBH4   10000 perm   2 sec   (6551 perm/sec)   p_kst 7.582000e-01   p_cons 9.500000e-02   p_joint 2.103000e-01

Joint ci ratio: 7.172118e-02	ci left: 1.252697e-01	ci right 1.346382e-01	k: 2598	n:20000
Cons ci ratio: 8.296989e-02	ci left: 9.621914e-02	ci right 1.045974e-01	k: 2007	n:20000
KS ci ratio: 1.568742e-02	ci left: 7.513971e-01	ci right 7.633280e-01	k: 15148	n:20000
ALKBH4   20000 perm   4 sec   (5652 perm/sec)   p_kst 7.574000e-01   p_cons 1.003500e-01   p_joint 1.299000e-01

Outputting figure to mutsig2_images.part000000000006/ALKBH4.2_921_20000_0.7574_0.10035_0.1299.png
                gene_name: ALKBH4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 95 percent done.
ALKBH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
ALKBH5   10000 perm   2 sec   (6293 perm/sec)   p_kst 4.723000e-01   p_cons 4.571000e-01   p_joint 9.191000e-01

Outputting figure to mutsig2_images.part000000000006/ALKBH5.2_1201_10000_0.4723_0.4571_0.9191.png
                gene_name: ALKBH5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 97 percent done.
ALKBH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
ALKBH6   10000 perm   1 sec   (6724 perm/sec)   p_kst 2.864000e-01   p_cons 5.360000e-02   p_joint 7.840000e-02

Joint ci ratio: 9.207096e-02	ci left: 7.926130e-02	ci right 8.696041e-02	k: 1661	n:20000
Cons ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
KS ci ratio: 4.413084e-02	ci left: 2.766150e-01	ci right 2.891481e-01	k: 5657	n:20000
ALKBH6   20000 perm   3 sec   (5788 perm/sec)   p_kst 2.828500e-01   p_cons 6.520000e-02   p_joint 8.305000e-02

Joint ci ratio: 8.102858e-02	ci left: 6.942693e-02	ci right 7.532287e-02	k: 2170	n:30000
Cons ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
KS ci ratio: 3.567784e-02	ci left: 2.817858e-01	ci right 2.920555e-01	k: 8607	n:30000
ALKBH6   30000 perm   6 sec   (5442 perm/sec)   p_kst 2.869000e-01   p_cons 6.470000e-02   p_joint 7.233333e-02

Outputting figure to mutsig2_images.part000000000006/ALKBH6.2_829_30000_0.2869_0.0647_0.072333.png
                gene_name: ALKBH6
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 98 percent done.
ALOX15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
Cons ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
KS ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
ALOX15B   10000 perm   2 sec   (6059 perm/sec)   p_kst 8.851000e-01   p_cons 2.723000e-01   p_joint 5.288000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX15B.2_2087_10000_0.8851_0.2723_0.5288.png
                gene_name: ALOX15B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000006
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 6 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 4421686: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000007> was used as the working directory.
Started at Wed Oct 24 17:29:53 2012
Results reported at Wed Oct 24 17:43:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000007.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000007.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 7  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000007.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    880.56 sec.
    Max Memory :      5298 MB
    Max Swap   :      8005 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
7
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 7
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 7: processing genes 544 - 633
Calculating significance of each gene.
Using projection method.
544	ALPK2	9.535470e-01
545	ALPK3	8.460576e-01
546	ALPL	8.166293e-01
547	ALPP	6.532702e-01
548	ALPPL2	5.236356e-01
549	ALS2	9.978169e-01
550	ALS2CL	8.834753e-01
551	ALS2CR11	1
552	ALS2CR12	4.795826e-01
553	ALS2CR4	1
554	ALS2CR8	1
555	ALX1	1
556	ALX3	1
557	ALX4	5.773198e-01
558	AMAC1	2.398819e-02
559	AMAC1L2	3.293646e-01
560	AMAC1L3	1
561	AMACR	3.545711e-01
562	AMBN	1
563	AMBP	7.072409e-01
564	AMBRA1	9.979501e-01
565	AMD1	7.183291e-01
566	AMDHD1	6.530519e-01
567	AMDHD2	9.287602e-01
568	AMELX	1.412169e-02
569	AMELY	4.952077e-02
570	AMFR	7.965290e-01
571	AMH	6.333317e-01
572	AMHR2	8.325190e-01
573	AMICA1	1.413639e-01
574	AMIGO1	8.863610e-01
575	AMIGO2	9.701198e-01
576	AMIGO3	1
577	AMMECR1	3.777063e-01
578	AMMECR1L	5.821100e-01
579	AMN	4.601532e-01
580	AMN1	6.046675e-01
581	AMOT	5.846796e-01
582	AMOTL1	6.451377e-01
583	AMOTL2	9.698510e-01
584	AMPD1	1
585	AMPD2	9.019773e-01
In gene AMPD3 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 2411    n = 1	mu =   5.35e-07
586	AMPD3	8.964470e-01
587	AMPH	4.834959e-01
In gene AMT the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1276    n = 1	mu =   5.35e-07
588	AMT	7.568797e-01
589	AMTN	4.048019e-01
590	AMY2A	8.374564e-01
591	AMY2B	1.965646e-01
592	AMZ1	1
593	AMZ2	1
594	ANAPC1	8.228776e-01
595	ANAPC10	5.681565e-01
596	ANAPC11	4.396461e-01
597	ANAPC13	1
598	ANAPC16	1
599	ANAPC2	9.885364e-01
600	ANAPC4	9.026988e-01
601	ANAPC5	9.507627e-01
602	ANAPC7	3.829085e-01
603	ANG	1
604	ANGEL1	5.062549e-01
605	ANGEL2	9.613943e-01
606	ANGPT1	1
607	ANGPT2	2.714946e-01
608	ANGPT4	3.432092e-01
609	ANGPTL1	1
610	ANGPTL2	6.448678e-01
611	ANGPTL3	1
612	ANGPTL4	8.188882e-01
613	ANGPTL5	2.956368e-01
614	ANGPTL6	7.982402e-01
615	ANGPTL7	1
616	ANK1	5.663802e-01
617	ANK2	1
618	ANK3	1
619	ANKAR	9.987685e-01
620	ANKDD1A	6.880454e-01
621	ANKFN1	2.777381e-01
622	ANKFY1	9.625620e-01
623	ANKH	5.734030e-01
624	ANKHD1	1
625	ANKHD1-EIF4EBP3	9.916219e-01
626	ANKIB1	1
627	ANKK1	8.304642e-01
628	ANKLE1	1
629	ANKLE2	3.284119e-01
630	ANKMY1	9.977995e-01
631	ANKMY2	2.137966e-01
632	ANKRA2	7.910316e-01
633	ANKRD1	5.213425e-02
Done

Running MutSig 2:
Scatter job 7: processing genes 544 - 633
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANK2
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
Cons ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
KS ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
ANK2   10000 perm   4 sec   (2352 perm/sec)   p_kst 7.283000e-01   p_cons 8.913000e-01   p_joint 8.295000e-01

Outputting figure to mutsig2_images.part000000000007/ANK2.56_12123_10000_0.7283_0.8913_0.8295.png
                gene_name: ANK2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 2 percent done.
ANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
Cons ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
KS ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
ANK1   10000 perm   3 sec   (3420 perm/sec)   p_kst 2.803000e-01   p_cons 4.577000e-01   p_joint 4.090000e-01

Outputting figure to mutsig2_images.part000000000007/ANK1.31_6298_10000_0.2803_0.4577_0.409.png
                gene_name: ANK1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 3 percent done.
ALPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
KS ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
ALPK2   10000 perm   3 sec   (3746 perm/sec)   p_kst 8.956000e-01   p_cons 7.297000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ALPK2.21_6561_10000_0.8956_0.7297_1.png
                gene_name: ALPK2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
ANK3
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
KS ci ratio: 1.462890e-02	ci left: 8.712206e-01	ci right 8.841585e-01	k: 8778	n:10000
ANK3   10000 perm   3 sec   (3040 perm/sec)   p_kst 8.778000e-01   p_cons 7.800000e-02   p_joint 3.584000e-01

Joint ci ratio: 4.590317e-02	ci left: 2.610270e-01	ci right 2.733408e-01	k: 5343	n:20000
Cons ci ratio: 9.877348e-02	ci left: 6.938317e-02	ci right 7.664156e-02	k: 1459	n:20000
KS ci ratio: 1.019804e-02	ci left: 8.762289e-01	ci right 8.852601e-01	k: 17616	n:20000
ANK3   20000 perm   7 sec   (2797 perm/sec)   p_kst 8.808000e-01   p_cons 7.295000e-02   p_joint 2.671500e-01

Outputting figure to mutsig2_images.part000000000007/ANK3.19_13639_20000_0.8808_0.07295_0.26715.png
                gene_name: ANK3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
AMY2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
Cons ci ratio: 5.408478e-02	ci left: 3.349839e-01	ci right 3.537069e-01	k: 3443	n:10000
KS ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
AMY2B   10000 perm   2 sec   (4829 perm/sec)   p_kst 4.851000e-01   p_cons 3.443000e-01   p_joint 5.647000e-01

Outputting figure to mutsig2_images.part000000000007/AMY2B.16_1576_10000_0.4851_0.3443_0.5647.png
                gene_name: AMY2B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 8 percent done.
AMOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
Cons ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
KS ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
AMOT   10000 perm   2 sec   (4330 perm/sec)   p_kst 1.840000e-02   p_cons 2.553000e-01   p_joint 6.200000e-02

Joint ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
Cons ci ratio: 4.791377e-02	ci left: 2.447048e-01	ci right 2.567677e-01	k: 5014	n:20000
KS ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
AMOT   20000 perm   5 sec   (3904 perm/sec)   p_kst 1.985000e-02   p_cons 2.507000e-01   p_joint 3.515000e-02

Joint ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
Cons ci ratio: 3.802006e-02	ci left: 2.566332e-01	ci right 2.666130e-01	k: 7848	n:30000
KS ci ratio: 1.624756e-01	ci left: 1.748515e-02	ci right 2.060898e-02	k: 570	n:30000
AMOT   30000 perm   8 sec   (3788 perm/sec)   p_kst 1.900000e-02   p_cons 2.616000e-01   p_joint 3.590000e-02

Joint ci ratio: 1.029917e-01	ci left: 3.314718e-02	ci right 3.677074e-02	k: 1397	n:40000
Cons ci ratio: 3.351238e-02	ci left: 2.505849e-01	ci right 2.591507e-01	k: 10194	n:40000
KS ci ratio: 1.415001e-01	ci left: 1.749153e-02	ci right 2.017897e-02	k: 752	n:40000
AMOT   40000 perm   11 sec   (3694 perm/sec)   p_kst 1.880000e-02   p_cons 2.548500e-01   p_joint 3.492500e-02

Joint ci ratio: 9.474882e-02	ci left: 3.152953e-02	ci right 3.468498e-02	k: 1654	n:50000
Cons ci ratio: 2.999297e-02	ci left: 2.508058e-01	ci right 2.584627e-01	k: 12731	n:50000
KS ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
AMOT   50000 perm   14 sec   (3620 perm/sec)   p_kst 1.780000e-02   p_cons 2.546200e-01   p_joint 3.308000e-02

Joint ci ratio: 8.629156e-02	ci left: 3.181338e-02	ci right 3.469867e-02	k: 1994	n:60000
Cons ci ratio: 2.730706e-02	ci left: 2.521465e-01	ci right 2.591438e-01	k: 15338	n:60000
KS ci ratio: 1.193899e-01	ci left: 1.659526e-02	ci right 1.871843e-02	k: 1058	n:60000
AMOT   60000 perm   17 sec   (3562 perm/sec)   p_kst 1.763333e-02   p_cons 2.556333e-01   p_joint 3.323333e-02

Joint ci ratio: 8.128265e-02	ci left: 3.084852e-02	ci right 3.347616e-02	k: 2250	n:70000
Cons ci ratio: 2.531422e-02	ci left: 2.519165e-01	ci right 2.583895e-01	k: 17860	n:70000
KS ci ratio: 1.089947e-01	ci left: 1.715310e-02	ci right 1.914427e-02	k: 1269	n:70000
AMOT   70000 perm   20 sec   (3503 perm/sec)   p_kst 1.812857e-02   p_cons 2.551429e-01   p_joint 3.214286e-02

Joint ci ratio: 6.871658e-02	ci left: 3.774273e-02	ci right 4.044083e-02	k: 3126	n:80000
Cons ci ratio: 2.368908e-02	ci left: 2.519699e-01	ci right 2.580229e-01	k: 20399	n:80000
KS ci ratio: 1.016855e-01	ci left: 1.730933e-02	ci right 1.917584e-02	k: 1458	n:80000
AMOT   80000 perm   23 sec   (3449 perm/sec)   p_kst 1.822500e-02   p_cons 2.549875e-01   p_joint 3.907500e-02

Joint ci ratio: 6.316783e-02	ci left: 3.973567e-02	ci right 4.233846e-02	k: 3692	n:90000
Cons ci ratio: 2.234474e-02	ci left: 2.519666e-01	ci right 2.576714e-01	k: 22933	n:90000
KS ci ratio: 9.624027e-02	ci left: 1.722819e-02	ci right 1.898084e-02	k: 1628	n:90000
AMOT   90000 perm   26 sec   (3404 perm/sec)   p_kst 1.808889e-02   p_cons 2.548111e-01   p_joint 4.102222e-02

Outputting figure to mutsig2_images.part000000000007/AMOT.12_3299_90000_0.018089_0.25481_0.041022.png
                gene_name: AMOT
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 10 percent done.
AMPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
AMPH   10000 perm   2 sec   (5483 perm/sec)   p_kst 4.865000e-01   p_cons 5.670000e-02   p_joint 9.340000e-02

Joint ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
Cons ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
KS ci ratio: 2.874721e-02	ci left: 4.748032e-01	ci right 4.887021e-01	k: 9635	n:20000
AMPH   20000 perm   4 sec   (4931 perm/sec)   p_kst 4.817500e-01   p_cons 5.890000e-02   p_joint 1.055500e-01

Joint ci ratio: 4.771337e-02	ci left: 1.792661e-01	ci right 1.880619e-01	k: 5509	n:30000
Cons ci ratio: 9.032902e-02	ci left: 5.639247e-02	ci right 6.175999e-02	k: 1771	n:30000
KS ci ratio: 2.365750e-02	ci left: 4.721667e-01	ci right 4.835043e-01	k: 14335	n:30000
AMPH   30000 perm   6 sec   (4683 perm/sec)   p_kst 4.778333e-01   p_cons 5.903333e-02   p_joint 1.836333e-01

Outputting figure to mutsig2_images.part000000000007/AMPH.10_2172_30000_0.47783_0.059033_0.18363.png
                gene_name: AMPH
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 11 percent done.
ANKFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
Cons ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
KS ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
ANKFN1   10000 perm   2 sec   (4934 perm/sec)   p_kst 1.988000e-01   p_cons 4.931000e-01   p_joint 3.106000e-01

Outputting figure to mutsig2_images.part000000000007/ANKFN1.9_2360_10000_0.1988_0.4931_0.3106.png
                gene_name: ANKFN1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 13 percent done.
ANKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
Cons ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
ANKLE2   10000 perm   2 sec   (4946 perm/sec)   p_kst 1.750000e-01   p_cons 3.220000e-02   p_joint 7.210000e-02

Joint ci ratio: 9.204076e-02	ci left: 7.931024e-02	ci right 8.701145e-02	k: 1662	n:20000
Cons ci ratio: 1.576109e-01	ci left: 2.763127e-02	ci right 3.240667e-02	k: 599	n:20000
KS ci ratio: 6.192770e-02	ci left: 1.617065e-01	ci right 1.720906e-01	k: 3337	n:20000
ANKLE2   20000 perm   4 sec   (4473 perm/sec)   p_kst 1.668500e-01   p_cons 2.995000e-02   p_joint 8.310000e-02

Joint ci ratio: 9.970367e-02	ci left: 4.655183e-02	ci right 5.146931e-02	k: 1469	n:30000
Cons ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
KS ci ratio: 5.023320e-02	ci left: 1.644779e-01	ci right 1.729863e-01	k: 5061	n:30000
ANKLE2   30000 perm   7 sec   (4307 perm/sec)   p_kst 1.687000e-01   p_cons 2.973333e-02   p_joint 4.896667e-02

Joint ci ratio: 7.374642e-02	ci left: 6.353681e-02	ci right 6.842643e-02	k: 2638	n:40000
Cons ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
KS ci ratio: 4.384107e-02	ci left: 1.629106e-01	ci right 1.702378e-01	k: 6662	n:40000
ANKLE2   40000 perm   10 sec   (4177 perm/sec)   p_kst 1.665500e-01   p_cons 2.922500e-02   p_joint 6.595000e-02

Joint ci ratio: 7.216757e-02	ci left: 5.370561e-02	ci right 5.774617e-02	k: 2785	n:50000
Cons ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
KS ci ratio: 3.937662e-02	ci left: 1.621528e-01	ci right 1.686860e-01	k: 8270	n:50000
ANKLE2   50000 perm   12 sec   (4092 perm/sec)   p_kst 1.654000e-01   p_cons 2.656000e-02   p_joint 5.570000e-02

Joint ci ratio: 6.639876e-02	ci left: 5.307420e-02	ci right 5.673567e-02	k: 3293	n:60000
Cons ci ratio: 9.705833e-02	ci left: 2.518061e-02	ci right 2.776547e-02	k: 1587	n:60000
KS ci ratio: 3.592239e-02	ci left: 1.626170e-01	ci right 1.685820e-01	k: 9935	n:60000
ANKLE2   60000 perm   15 sec   (4002 perm/sec)   p_kst 1.655833e-01   p_cons 2.645000e-02   p_joint 5.488333e-02

Outputting figure to mutsig2_images.part000000000007/ANKLE2.9_2869_60000_0.16558_0.02645_0.054883.png
                gene_name: ANKLE2
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 15 percent done.
ALPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
Cons ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
KS ci ratio: 1.182134e-02	ci left: 9.111117e-01	ci right 9.220441e-01	k: 9167	n:10000
ALPK3   10000 perm   2 sec   (4382 perm/sec)   p_kst 9.167000e-01   p_cons 3.264000e-01   p_joint 7.316000e-01

Outputting figure to mutsig2_images.part000000000007/ALPK3.8_5780_10000_0.9167_0.3264_0.7316.png
                gene_name: ALPK3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 16 percent done.
ANKHD1-EIF4EBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
ANKHD1-EIF4EBP3   10000 perm   3 sec   (3759 perm/sec)   p_kst 7.100000e-01   p_cons 1.581000e-01   p_joint 4.321000e-01

Outputting figure to mutsig2_images.part000000000007/ANKHD1-EIF4EBP3.8_7998_10000_0.71_0.1581_0.4321.png
                gene_name: ANKHD1-EIF4EBP3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 18 percent done.
AMOTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
KS ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
AMOTL1   10000 perm   2 sec   (5208 perm/sec)   p_kst 9.747000e-01   p_cons 8.100000e-02   p_joint 2.158000e-01

Joint ci ratio: 4.107975e-02	ci left: 3.063771e-01	ci right 3.192774e-01	k: 6256	n:20000
Cons ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
KS ci ratio: 4.554928e-03	ci left: 9.714392e-01	ci right 9.759217e-01	k: 19475	n:20000
AMOTL1   20000 perm   4 sec   (4664 perm/sec)   p_kst 9.737500e-01   p_cons 8.490000e-02   p_joint 3.128000e-01

Outputting figure to mutsig2_images.part000000000007/AMOTL1.7_2923_20000_0.97375_0.0849_0.3128.png
                gene_name: AMOTL1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 19 percent done.
ANGPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
Cons ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
KS ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
ANGPT1   10000 perm   2 sec   (5735 perm/sec)   p_kst 1.820000e-01   p_cons 4.668000e-01   p_joint 3.225000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPT1.7_1533_10000_0.182_0.4668_0.3225.png
                gene_name: ANGPT1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
ANKIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
ANKIB1   10000 perm   2 sec   (4843 perm/sec)   p_kst 4.140000e-02   p_cons 4.090000e-02   p_joint 7.300000e-02

Joint ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
Cons ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
ANKIB1   20000 perm   5 sec   (4410 perm/sec)   p_kst 4.040000e-02   p_cons 4.110000e-02   p_joint 5.115000e-02

Joint ci ratio: 1.229612e-01	ci left: 3.074850e-02	ci right 3.480931e-02	k: 982	n:30000
Cons ci ratio: 1.084477e-01	ci left: 3.946574e-02	ci right 4.402355e-02	k: 1251	n:30000
KS ci ratio: 1.098281e-01	ci left: 3.849196e-02	ci right 4.299753e-02	k: 1221	n:30000
ANKIB1   30000 perm   7 sec   (4216 perm/sec)   p_kst 4.070000e-02   p_cons 4.170000e-02   p_joint 3.273333e-02

Joint ci ratio: 1.157456e-01	ci left: 2.625936e-02	ci right 2.950967e-02	k: 1114	n:40000
Cons ci ratio: 9.280283e-02	ci left: 4.071499e-02	ci right 4.470174e-02	k: 1707	n:40000
KS ci ratio: 9.570777e-02	ci left: 3.832041e-02	ci right 4.219670e-02	k: 1609	n:40000
ANKIB1   40000 perm   10 sec   (4093 perm/sec)   p_kst 4.022500e-02   p_cons 4.267500e-02   p_joint 2.785000e-02

Joint ci ratio: 6.722146e-02	ci left: 6.153538e-02	ci right 6.583545e-02	k: 3183	n:50000
Cons ci ratio: 7.520288e-02	ci left: 4.959848e-02	ci right 5.349380e-02	k: 2576	n:50000
KS ci ratio: 8.528421e-02	ci left: 3.880843e-02	ci right 4.228517e-02	k: 2026	n:50000
ANKIB1   50000 perm   12 sec   (4005 perm/sec)   p_kst 4.052000e-02   p_cons 5.152000e-02   p_joint 6.366000e-02

Outputting figure to mutsig2_images.part000000000007/ANKIB1.7_3346_50000_0.04052_0.05152_0.06366.png
                gene_name: ANKIB1
               theta_stop: 0.085 
                    nperm: 50000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 23 percent done.
ALX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
ALX1   10000 perm   2 sec   (5712 perm/sec)   p_kst 2.543000e-01   p_cons 4.442000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000007/ALX1.6_997_10000_0.2543_0.4442_0.3582.png
                gene_name: ALX1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 24 percent done.
AMAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
Cons ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
KS ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
AMAC1   10000 perm   2 sec   (5440 perm/sec)   p_kst 5.688000e-01   p_cons 4.124000e-01   p_joint 6.502000e-01

Outputting figure to mutsig2_images.part000000000007/AMAC1.6_1021_10000_0.5688_0.4124_0.6502.png
                gene_name: AMAC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 26 percent done.
AMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
Cons ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
AMPD1   10000 perm   2 sec   (5398 perm/sec)   p_kst 5.000000e-01   p_cons 4.773000e-01   p_joint 7.082000e-01

Outputting figure to mutsig2_images.part000000000007/AMPD1.6_2407_10000_0.5_0.4773_0.7082.png
                gene_name: AMPD1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 27 percent done.
ANKMY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
Cons ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
KS ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
ANKMY1   10000 perm   2 sec   (4926 perm/sec)   p_kst 2.319000e-01   p_cons 2.798000e-01   p_joint 2.832000e-01

Outputting figure to mutsig2_images.part000000000007/ANKMY1.6_3161_10000_0.2319_0.2798_0.2832.png
                gene_name: ANKMY1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
ANKRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
KS ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
ANKRD1   10000 perm   2 sec   (5686 perm/sec)   p_kst 8.990000e-01   p_cons 6.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKRD1.6_996_10000_0.899_0.6997_1.png
                gene_name: ANKRD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
ALS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
Cons ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
ALS2   10000 perm   2 sec   (4419 perm/sec)   p_kst 7.340000e-02   p_cons 1.930000e-02   p_joint 3.660000e-02

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
KS ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
ALS2   20000 perm   5 sec   (4044 perm/sec)   p_kst 7.255000e-02   p_cons 1.940000e-02   p_joint 1.715000e-02

Joint ci ratio: 2.083036e-01	ci left: 1.045075e-02	ci right 1.291184e-02	k: 349	n:30000
Cons ci ratio: 1.523175e-01	ci left: 1.995267e-02	ci right 2.327421e-02	k: 647	n:30000
KS ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
ALS2   30000 perm   8 sec   (3883 perm/sec)   p_kst 7.266667e-02   p_cons 2.156667e-02   p_joint 1.163333e-02

Joint ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
Cons ci ratio: 1.310612e-01	ci left: 2.043962e-02	ci right 2.333037e-02	k: 874	n:40000
KS ci ratio: 6.968978e-02	ci left: 7.073983e-02	ci right 7.587232e-02	k: 2931	n:40000
ALS2   40000 perm   11 sec   (3786 perm/sec)   p_kst 7.327500e-02   p_cons 2.185000e-02   p_joint 1.495000e-02

Joint ci ratio: 1.663789e-01	ci left: 1.006589e-02	ci right 1.191154e-02	k: 548	n:50000
Cons ci ratio: 1.126134e-01	ci left: 2.232606e-02	ci right 2.500964e-02	k: 1182	n:50000
KS ci ratio: 6.247062e-02	ci left: 7.071497e-02	ci right 7.529475e-02	k: 3649	n:50000
ALS2   50000 perm   13 sec   (3713 perm/sec)   p_kst 7.298000e-02   p_cons 2.364000e-02   p_joint 1.096000e-02

Joint ci ratio: 1.577754e-01	ci left: 9.379414e-03	ci right 1.100182e-02	k: 610	n:60000
Cons ci ratio: 1.038785e-01	ci left: 2.197775e-02	ci right 2.440201e-02	k: 1390	n:60000
KS ci ratio: 5.709100e-02	ci left: 7.076640e-02	ci right 7.494170e-02	k: 4370	n:60000
ALS2   60000 perm   16 sec   (3653 perm/sec)   p_kst 7.283333e-02   p_cons 2.316667e-02   p_joint 1.016667e-02

Joint ci ratio: 1.072865e-01	ci left: 1.770934e-02	ci right 1.973084e-02	k: 1309	n:70000
Cons ci ratio: 9.568609e-02	ci left: 2.229278e-02	ci right 2.454696e-02	k: 1638	n:70000
KS ci ratio: 5.272513e-02	ci left: 7.125284e-02	ci right 7.512549e-02	k: 5122	n:70000
ALS2   70000 perm   19 sec   (3596 perm/sec)   p_kst 7.317143e-02   p_cons 2.340000e-02   p_joint 1.870000e-02

Joint ci ratio: 1.128824e-01	ci left: 1.401108e-02	ci right 1.569937e-02	k: 1187	n:80000
Cons ci ratio: 9.005275e-02	ci left: 2.209456e-02	ci right 2.419022e-02	k: 1850	n:80000
KS ci ratio: 4.944691e-02	ci left: 7.103363e-02	ci right 7.464742e-02	k: 5826	n:80000
ALS2   80000 perm   23 sec   (3541 perm/sec)   p_kst 7.282500e-02   p_cons 2.312500e-02   p_joint 1.483750e-02

Joint ci ratio: 1.110051e-01	ci left: 1.290748e-02	ci right 1.443521e-02	k: 1229	n:90000
Cons ci ratio: 8.539453e-02	ci left: 2.189994e-02	ci right 2.386431e-02	k: 2058	n:90000
KS ci ratio: 4.679780e-02	ci left: 7.062724e-02	ci right 7.402261e-02	k: 6508	n:90000
ALS2   90000 perm   26 sec   (3489 perm/sec)   p_kst 7.231111e-02   p_cons 2.286667e-02   p_joint 1.365556e-02

Joint ci ratio: 1.099562e-01	ci left: 1.185947e-02	ci right 1.324902e-02	k: 1254	n:100000
Cons ci ratio: 8.100838e-02	ci left: 2.195233e-02	ci right 2.381548e-02	k: 2287	n:100000
KS ci ratio: 4.458005e-02	ci left: 7.016781e-02	ci right 7.337708e-02	k: 7176	n:100000
ALS2   100000 perm   29 sec   (3437 perm/sec)   p_kst 7.176000e-02   p_cons 2.287000e-02   p_joint 1.254000e-02

Joint ci ratio: 1.094041e-01	ci left: 1.090482e-02	ci right 1.217567e-02	k: 1268	n:110000
Cons ci ratio: 7.737705e-02	ci left: 2.191705e-02	ci right 2.369005e-02	k: 2507	n:110000
KS ci ratio: 4.257140e-02	ci left: 7.003814e-02	ci right 7.309359e-02	k: 7871	n:110000
ALS2   110000 perm   32 sec   (3389 perm/sec)   p_kst 7.155455e-02   p_cons 2.279091e-02   p_joint 1.152727e-02

Joint ci ratio: 8.368077e-02	ci left: 1.720630e-02	ci right 1.871713e-02	k: 2154	n:120000
Cons ci ratio: 7.387594e-02	ci left: 2.207740e-02	ci right 2.377909e-02	k: 2750	n:120000
KS ci ratio: 4.079905e-02	ci left: 6.997410e-02	ci right 7.289666e-02	k: 8571	n:120000
ALS2   120000 perm   36 sec   (3342 perm/sec)   p_kst 7.142500e-02   p_cons 2.291667e-02   p_joint 1.795000e-02

Outputting figure to mutsig2_images.part000000000007/ALS2.5_5184_120000_0.071425_0.022917_0.01795.png
                gene_name: ALS2
               theta_stop: 0.084 
                    nperm: 120000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 32 percent done.
AMAC1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
AMAC1L2   10000 perm   2 sec   (6114 perm/sec)   p_kst 6.110000e-02   p_cons 2.013000e-01   p_joint 6.180000e-02

Joint ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
Cons ci ratio: 5.598816e-02	ci left: 1.913093e-01	ci right 2.023790e-01	k: 3936	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
AMAC1L2   20000 perm   4 sec   (5302 perm/sec)   p_kst 5.950000e-02   p_cons 1.968000e-01   p_joint 9.135000e-02

Joint ci ratio: 8.064878e-02	ci left: 7.004841e-02	ci right 7.596794e-02	k: 2189	n:30000
Cons ci ratio: 4.537735e-02	ci left: 1.946600e-01	ci right 2.037316e-01	k: 5975	n:30000
KS ci ratio: 8.902807e-02	ci left: 5.799134e-02	ci right 6.342745e-02	k: 1820	n:30000
AMAC1L2   30000 perm   6 sec   (5096 perm/sec)   p_kst 6.066667e-02   p_cons 1.991667e-01   p_joint 7.296667e-02

Outputting figure to mutsig2_images.part000000000007/AMAC1L2.5_1021_30000_0.060667_0.19917_0.072967.png
                gene_name: AMAC1L2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 34 percent done.
AMACR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
Cons ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
KS ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
AMACR   10000 perm   2 sec   (5517 perm/sec)   p_kst 1.475000e-01   p_cons 7.568000e-01   p_joint 2.434000e-01

Outputting figure to mutsig2_images.part000000000007/AMACR.5_1499_10000_0.1475_0.7568_0.2434.png
                gene_name: AMACR
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 35 percent done.
AMELX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
Cons ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
KS ci ratio: 1.082099e-01	ci left: 1.096886e-01	ci right 1.223361e-01	k: 1159	n:10000
AMELX   10000 perm   2 sec   (5820 perm/sec)   p_kst 1.159000e-01   p_cons 6.953000e-01   p_joint 2.533000e-01

Joint ci ratio: 5.389127e-02	ci left: 2.035311e-01	ci right 2.148536e-01	k: 4183	n:20000
Cons ci ratio: 1.835534e-02	ci left: 6.887170e-01	ci right 7.015262e-01	k: 13903	n:20000
KS ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
AMELX   20000 perm   4 sec   (5237 perm/sec)   p_kst 1.192000e-01   p_cons 6.951500e-01   p_joint 2.091500e-01

Outputting figure to mutsig2_images.part000000000007/AMELX.5_642_20000_0.1192_0.69515_0.20915.png
                gene_name: AMELX
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
AMICA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
Cons ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
KS ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
AMICA1   10000 perm   2 sec   (5961 perm/sec)   p_kst 3.722000e-01   p_cons 1.910000e-02   p_joint 8.610000e-02

Joint ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
Cons ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
KS ci ratio: 3.652118e-02	ci left: 3.587711e-01	ci right 3.721681e-01	k: 7309	n:20000
AMICA1   20000 perm   4 sec   (5291 perm/sec)   p_kst 3.654500e-01   p_cons 1.670000e-02   p_joint 6.530000e-02

Joint ci ratio: 8.755303e-02	ci left: 5.988461e-02	ci right 6.540046e-02	k: 1878	n:30000
Cons ci ratio: 1.715833e-01	ci left: 1.563128e-02	ci right 1.859663e-02	k: 512	n:30000
KS ci ratio: 2.976802e-02	ci left: 3.608114e-01	ci right 3.717479e-01	k: 10988	n:30000
AMICA1   30000 perm   6 sec   (5033 perm/sec)   p_kst 3.662667e-01   p_cons 1.706667e-02   p_joint 6.260000e-02

Joint ci ratio: 7.057689e-02	ci left: 6.906744e-02	ci right 7.414496e-02	k: 2863	n:40000
Cons ci ratio: 1.497134e-01	ci left: 1.558726e-02	ci right 1.813357e-02	k: 673	n:40000
KS ci ratio: 2.563334e-02	ci left: 3.641936e-01	ci right 3.736754e-01	k: 14757	n:40000
AMICA1   40000 perm   8 sec   (4876 perm/sec)   p_kst 3.689250e-01   p_cons 1.682500e-02   p_joint 7.157500e-02

Joint ci ratio: 6.805856e-02	ci left: 6.009850e-02	ci right 6.435250e-02	k: 3110	n:50000
Cons ci ratio: 1.341106e-01	ci left: 1.567226e-02	ci right 1.794434e-02	k: 839	n:50000
KS ci ratio: 2.279625e-02	ci left: 3.673619e-01	ci right 3.758530e-01	k: 18580	n:50000
AMICA1   50000 perm   11 sec   (4754 perm/sec)   p_kst 3.716000e-01   p_cons 1.678000e-02   p_joint 6.220000e-02

Joint ci ratio: 6.441535e-02	ci left: 5.625767e-02	ci right 6.001854e-02	k: 3487	n:60000
Cons ci ratio: 1.225496e-01	ci left: 1.573823e-02	ci right 1.780889e-02	k: 1005	n:60000
KS ci ratio: 2.078347e-02	ci left: 3.683301e-01	ci right 3.760823e-01	k: 22332	n:60000
AMICA1   60000 perm   13 sec   (4651 perm/sec)   p_kst 3.722000e-01   p_cons 1.675000e-02   p_joint 5.811667e-02

Joint ci ratio: 5.487617e-02	ci left: 6.607535e-02	ci right 6.981771e-02	k: 4755	n:70000
Cons ci ratio: 1.131489e-01	ci left: 1.590251e-02	ci right 1.782356e-02	k: 1179	n:70000
KS ci ratio: 1.924714e-02	ci left: 3.684890e-01	ci right 3.756645e-01	k: 26045	n:70000
AMICA1   70000 perm   15 sec   (4556 perm/sec)   p_kst 3.720714e-01   p_cons 1.684286e-02   p_joint 6.792857e-02

Joint ci ratio: 5.856168e-02	ci left: 5.148219e-02	ci right 5.460032e-02	k: 4242	n:80000
Cons ci ratio: 1.070825e-01	ci left: 1.559207e-02	ci right 1.736825e-02	k: 1317	n:80000
KS ci ratio: 1.801121e-02	ci left: 3.685368e-01	ci right 3.752474e-01	k: 29751	n:80000
AMICA1   80000 perm   18 sec   (4458 perm/sec)   p_kst 3.718875e-01   p_cons 1.646250e-02   p_joint 5.302500e-02

Joint ci ratio: 5.215199e-02	ci left: 5.752416e-02	ci right 6.061544e-02	k: 5315	n:90000
Cons ci ratio: 1.013675e-01	ci left: 1.551528e-02	ci right 1.718277e-02	k: 1470	n:90000
KS ci ratio: 1.696136e-02	ci left: 3.692734e-01	ci right 3.756015e-01	k: 33519	n:90000
AMICA1   90000 perm   21 sec   (4382 perm/sec)   p_kst 3.724333e-01   p_cons 1.633333e-02   p_joint 5.905556e-02

Joint ci ratio: 4.826982e-02	ci left: 6.037463e-02	ci right 6.337084e-02	k: 6186	n:100000
Cons ci ratio: 9.594056e-02	ci left: 1.563162e-02	ci right 1.721660e-02	k: 1641	n:100000
KS ci ratio: 1.607116e-02	ci left: 3.700114e-01	ci right 3.760160e-01	k: 37301	n:100000
AMICA1   100000 perm   23 sec   (4304 perm/sec)   p_kst 3.730100e-01   p_cons 1.641000e-02   p_joint 6.186000e-02

Outputting figure to mutsig2_images.part000000000007/AMICA1.5_1238_100000_0.37301_0.01641_0.06186.png
                gene_name: AMICA1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.063 

Current progress: 39 percent done.
ANAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
Cons ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
ANAPC1   10000 perm   2 sec   (4574 perm/sec)   p_kst 3.035000e-01   p_cons 2.703000e-01   p_joint 4.019000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC1.5_6023_10000_0.3035_0.2703_0.4019.png
                gene_name: ANAPC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
ANGPT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
ANGPT4   10000 perm   2 sec   (5423 perm/sec)   p_kst 4.591000e-01   p_cons 2.700000e-02   p_joint 9.120000e-02

Joint ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
Cons ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
KS ci ratio: 3.089961e-02	ci left: 4.389445e-01	ci right 4.527712e-01	k: 8917	n:20000
ANGPT4   20000 perm   4 sec   (4913 perm/sec)   p_kst 4.458500e-01   p_cons 3.050000e-02   p_joint 6.060000e-02

Joint ci ratio: 7.162986e-02	ci left: 8.750616e-02	ci right 9.404001e-02	k: 2722	n:30000
Cons ci ratio: 1.254912e-01	ci left: 2.952001e-02	ci right 3.350473e-02	k: 944	n:30000
KS ci ratio: 2.427948e-02	ci left: 4.592430e-01	ci right 4.705638e-01	k: 13947	n:30000
ANGPT4   30000 perm   6 sec   (4706 perm/sec)   p_kst 4.649000e-01   p_cons 3.146667e-02   p_joint 9.073333e-02

Joint ci ratio: 6.187119e-02	ci left: 8.837129e-02	ci right 9.403821e-02	k: 3647	n:40000
Cons ci ratio: 1.018645e-01	ci left: 3.387862e-02	ci right 3.753919e-02	k: 1427	n:40000
KS ci ratio: 2.105442e-02	ci left: 4.593529e-01	ci right 4.691523e-01	k: 18570	n:40000
ANGPT4   40000 perm   9 sec   (4555 perm/sec)   p_kst 4.642500e-01   p_cons 3.567500e-02   p_joint 9.117500e-02

Joint ci ratio: 5.406382e-02	ci left: 9.256201e-02	ci right 9.772510e-02	k: 4756	n:50000
Cons ci ratio: 9.071609e-02	ci left: 3.436455e-02	ci right 3.764961e-02	k: 1799	n:50000
KS ci ratio: 1.891111e-02	ci left: 4.577823e-01	ci right 4.665421e-01	k: 23108	n:50000
ANGPT4   50000 perm   11 sec   (4445 perm/sec)   p_kst 4.621600e-01   p_cons 3.598000e-02   p_joint 9.512000e-02

Outputting figure to mutsig2_images.part000000000007/ANGPT4.5_1548_50000_0.46216_0.03598_0.09512.png
                gene_name: ANGPT4
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 42 percent done.
ANKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
Cons ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
KS ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
ANKH   10000 perm   2 sec   (5811 perm/sec)   p_kst 3.694000e-01   p_cons 2.905000e-01   p_joint 3.688000e-01

Outputting figure to mutsig2_images.part000000000007/ANKH.5_1527_10000_0.3694_0.2905_0.3688.png
                gene_name: ANKH
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 44 percent done.
ALPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
ALPP   10000 perm   2 sec   (5496 perm/sec)   p_kst 9.600000e-03   p_cons 8.674000e-01   p_joint 5.710000e-02

Joint ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
Cons ci ratio: 1.125410e-02	ci left: 8.535925e-01	ci right 8.633030e-01	k: 17170	n:20000
KS ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
ALPP   20000 perm   4 sec   (4864 perm/sec)   p_kst 1.050000e-02   p_cons 8.585000e-01   p_joint 4.825000e-02

Joint ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
Cons ci ratio: 9.212644e-03	ci left: 8.538640e-01	ci right 8.617999e-01	k: 25736	n:30000
KS ci ratio: 2.186510e-01	ci left: 9.440543e-03	ci right 1.178901e-02	k: 317	n:30000
ALPP   30000 perm   6 sec   (4716 perm/sec)   p_kst 1.056667e-02   p_cons 8.578667e-01   p_joint 3.140000e-02

Joint ci ratio: 8.857874e-02	ci left: 4.460381e-02	ci right 4.876232e-02	k: 1866	n:40000
Cons ci ratio: 7.689460e-03	ci left: 8.632541e-01	ci right 8.699425e-01	k: 34665	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
ALPP   40000 perm   9 sec   (4591 perm/sec)   p_kst 9.975000e-03   p_cons 8.666250e-01   p_joint 4.665000e-02

Joint ci ratio: 7.796963e-02	ci left: 4.624072e-02	ci right 5.001197e-02	k: 2405	n:50000
Cons ci ratio: 6.880728e-03	ci left: 8.635077e-01	ci right 8.694897e-01	k: 43326	n:50000
KS ci ratio: 1.715061e-01	ci left: 9.452689e-03	ci right 1.124484e-02	k: 516	n:50000
ALPP   50000 perm   11 sec   (4496 perm/sec)   p_kst 1.032000e-02   p_cons 8.665200e-01   p_joint 4.810000e-02

Joint ci ratio: 7.563481e-02	ci left: 4.122699e-02	ci right 4.448408e-02	k: 2570	n:60000
Cons ci ratio: 6.288510e-03	ci left: 8.635004e-01	ci right 8.689642e-01	k: 51975	n:60000
KS ci ratio: 1.571272e-01	ci left: 9.459494e-03	ci right 1.108840e-02	k: 615	n:60000
ALPP   60000 perm   14 sec   (4418 perm/sec)   p_kst 1.025000e-02   p_cons 8.662500e-01   p_joint 4.283333e-02

Joint ci ratio: 8.431006e-02	ci left: 2.869269e-02	ci right 3.123219e-02	k: 2096	n:70000
Cons ci ratio: 5.809618e-03	ci left: 8.642029e-01	ci right 8.692524e-01	k: 60672	n:70000
KS ci ratio: 1.463660e-01	ci left: 9.400030e-03	ci right 1.089814e-02	k: 709	n:70000
ALPP   70000 perm   16 sec   (4341 perm/sec)   p_kst 1.012857e-02   p_cons 8.667429e-01   p_joint 2.994286e-02

Joint ci ratio: 8.109983e-02	ci left: 2.722303e-02	ci right 2.953634e-02	k: 2269	n:80000
Cons ci ratio: 5.437156e-03	ci left: 8.642496e-01	ci right 8.689738e-01	k: 69330	n:80000
KS ci ratio: 1.385108e-01	ci left: 9.225511e-03	ci right 1.061038e-02	k: 792	n:80000
ALPP   80000 perm   19 sec   (4266 perm/sec)   p_kst 9.900000e-03   p_cons 8.666250e-01   p_joint 2.836250e-02

Joint ci ratio: 7.850634e-02	ci left: 2.589629e-02	ci right 2.802323e-02	k: 2425	n:90000
Cons ci ratio: 5.122060e-03	ci left: 8.645739e-01	ci right 8.690247e-01	k: 78013	n:90000
KS ci ratio: 1.300840e-01	ci left: 9.338723e-03	ci right 1.064871e-02	k: 898	n:90000
ALPP   90000 perm   21 sec   (4194 perm/sec)   p_kst 9.977778e-03   p_cons 8.668111e-01   p_joint 2.694444e-02

Joint ci ratio: 6.596401e-02	ci left: 3.298369e-02	ci right 3.524344e-02	k: 3410	n:100000
Cons ci ratio: 4.857333e-03	ci left: 8.647790e-01	ci right 8.689997e-01	k: 86690	n:100000
KS ci ratio: 1.236519e-01	ci left: 9.334392e-03	ci right 1.057428e-02	k: 994	n:100000
ALPP   100000 perm   24 sec   (4126 perm/sec)   p_kst 9.940000e-03   p_cons 8.669000e-01   p_joint 3.410000e-02

Joint ci ratio: 5.978844e-02	ci left: 3.648351e-02	ci right 3.874095e-02	k: 4136	n:110000
Cons ci ratio: 4.634197e-03	ci left: 8.647320e-01	ci right 8.687577e-01	k: 95343	n:110000
KS ci ratio: 1.185281e-01	ci left: 9.261563e-03	ci right 1.043722e-02	k: 1082	n:110000
ALPP   110000 perm   27 sec   (4063 perm/sec)   p_kst 9.836364e-03   p_cons 8.667545e-01   p_joint 3.760000e-02

Joint ci ratio: 5.969174e-02	ci left: 3.365516e-02	ci right 3.573408e-02	k: 4162	n:120000
Cons ci ratio: 4.442908e-03	ci left: 8.645039e-01	ci right 8.683617e-01	k: 103973	n:120000
KS ci ratio: 1.134072e-01	ci left: 9.298942e-03	ci right 1.042493e-02	k: 1182	n:120000
ALPP   120000 perm   30 sec   (4001 perm/sec)   p_kst 9.850000e-03   p_cons 8.664417e-01   p_joint 3.468333e-02

Joint ci ratio: 6.179679e-02	ci left: 2.909450e-02	ci right 3.095731e-02	k: 3902	n:130000
Cons ci ratio: 4.272634e-03	ci left: 8.643606e-01	ci right 8.680692e-01	k: 112609	n:130000
KS ci ratio: 1.090692e-01	ci left: 9.301557e-03	ci right 1.038201e-02	k: 1278	n:130000
ALPP   130000 perm   33 sec   (3942 perm/sec)   p_kst 9.830769e-03   p_cons 8.662231e-01   p_joint 3.001538e-02

Joint ci ratio: 6.038512e-02	ci left: 2.833832e-02	ci right 3.010982e-02	k: 4090	n:140000
Cons ci ratio: 4.116731e-03	ci left: 8.644558e-01	ci right 8.680290e-01	k: 121275	n:140000
KS ci ratio: 1.057388e-01	ci left: 9.207117e-03	ci right 1.024191e-02	k: 1360	n:140000
ALPP   140000 perm   36 sec   (3883 perm/sec)   p_kst 9.714286e-03   p_cons 8.662500e-01   p_joint 2.921429e-02

Joint ci ratio: 5.975109e-02	ci left: 2.705925e-02	ci right 2.873240e-02	k: 4183	n:150000
Cons ci ratio: 3.975249e-03	ci left: 8.646276e-01	ci right 8.680782e-01	k: 129954	n:150000
KS ci ratio: 1.026240e-01	ci left: 9.138701e-03	ci right 1.013372e-02	k: 1444	n:150000
ALPP   150000 perm   39 sec   (3828 perm/sec)   p_kst 9.626667e-03   p_cons 8.663600e-01   p_joint 2.788667e-02

Joint ci ratio: 5.616072e-02	ci left: 2.871948e-02	ci right 3.038512e-02	k: 4727	n:160000
Cons ci ratio: 3.855827e-03	ci left: 8.642708e-01	ci right 8.676159e-01	k: 138552	n:160000
KS ci ratio: 9.990108e-02	ci left: 9.054850e-03	ci right 1.001305e-02	k: 1524	n:160000
ALPP   160000 perm   42 sec   (3775 perm/sec)   p_kst 9.525000e-03   p_cons 8.659500e-01   p_joint 2.954375e-02

Outputting figure to mutsig2_images.part000000000007/ALPP.4_1652_160000_0.009525_0.86595_0.029544.png
                gene_name: ALPP
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.030 

Current progress: 45 percent done.
ALS2CR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
Cons ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
KS ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
ALS2CR12   10000 perm   2 sec   (5902 perm/sec)   p_kst 2.340000e-02   p_cons 7.326000e-01   p_joint 8.790000e-02

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 1.603520e-02	ci left: 7.431819e-01	ci right 7.552456e-01	k: 14985	n:20000
KS ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
ALS2CR12   20000 perm   4 sec   (5267 perm/sec)   p_kst 2.405000e-02   p_cons 7.492500e-01   p_joint 8.525000e-02

Joint ci ratio: 8.578873e-02	ci left: 6.226857e-02	ci right 6.788268e-02	k: 1951	n:30000
Cons ci ratio: 1.360220e-02	ci left: 7.295978e-01	ci right 7.396234e-01	k: 22039	n:30000
KS ci ratio: 1.476129e-01	ci left: 2.126910e-02	ci right 2.469081e-02	k: 688	n:30000
ALS2CR12   30000 perm   6 sec   (5042 perm/sec)   p_kst 2.293333e-02   p_cons 7.346333e-01   p_joint 6.503333e-02

Joint ci ratio: 8.262309e-02	ci left: 5.106962e-02	ci right 5.549551e-02	k: 2130	n:40000
Cons ci ratio: 1.176578e-02	ci left: 7.307461e-01	ci right 7.394198e-01	k: 29404	n:40000
KS ci ratio: 1.297781e-01	ci left: 2.085104e-02	ci right 2.376888e-02	k: 891	n:40000
ALS2CR12   40000 perm   8 sec   (4880 perm/sec)   p_kst 2.227500e-02   p_cons 7.351000e-01   p_joint 5.325000e-02

Joint ci ratio: 5.685463e-02	ci left: 8.434626e-02	ci right 8.930183e-02	k: 4340	n:50000
Cons ci ratio: 1.012676e-02	ci left: 7.459791e-01	ci right 7.535919e-01	k: 37490	n:50000
KS ci ratio: 1.144602e-01	ci left: 2.160661e-02	ci right 2.424918e-02	k: 1145	n:50000
ALS2CR12   50000 perm   11 sec   (4751 perm/sec)   p_kst 2.290000e-02   p_cons 7.498000e-01   p_joint 8.680000e-02

Joint ci ratio: 5.454798e-02	ci left: 7.708416e-02	ci right 8.142331e-02	k: 4754	n:60000
Cons ci ratio: 9.281387e-03	ci left: 7.448071e-01	ci right 7.517688e-01	k: 44898	n:60000
KS ci ratio: 1.043402e-01	ci left: 2.178284e-02	ci right 2.419693e-02	k: 1378	n:60000
ALS2CR12   60000 perm   13 sec   (4644 perm/sec)   p_kst 2.296667e-02   p_cons 7.483000e-01   p_joint 7.923333e-02

Joint ci ratio: 5.455685e-02	ci left: 6.680876e-02	ci right 7.056995e-02	k: 4807	n:70000
Cons ci ratio: 8.603977e-03	ci left: 7.445799e-01	ci right 7.510281e-01	k: 52347	n:70000
KS ci ratio: 9.598636e-02	ci left: 2.215327e-02	ci right 2.440077e-02	k: 1628	n:70000
ALS2CR12   70000 perm   15 sec   (4547 perm/sec)   p_kst 2.325714e-02   p_cons 7.478143e-01   p_joint 6.867143e-02

Outputting figure to mutsig2_images.part000000000007/ALS2CR12.4_1394_70000_0.023257_0.74781_0.068671.png
                gene_name: ALS2CR12
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 47 percent done.
ALX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
Cons ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
ALX4   10000 perm   2 sec   (6192 perm/sec)   p_kst 1.180000e-01   p_cons 1.053000e-01   p_joint 1.099000e-01

Joint ci ratio: 5.564522e-02	ci left: 1.932385e-01	ci right 2.043492e-01	k: 3975	n:20000
Cons ci ratio: 7.880247e-02	ci left: 1.057447e-01	ci right 1.144690e-01	k: 2201	n:20000
KS ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
ALX4   20000 perm   4 sec   (5477 perm/sec)   p_kst 1.192000e-01   p_cons 1.100500e-01   p_joint 1.987500e-01

Outputting figure to mutsig2_images.part000000000007/ALX4.4_1252_20000_0.1192_0.11005_0.19875.png
                gene_name: ALX4
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
AMY2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
AMY2A   10000 perm   2 sec   (5774 perm/sec)   p_kst 3.035000e-01   p_cons 1.040000e-02   p_joint 1.111000e-01

Joint ci ratio: 6.715852e-02	ci left: 1.406400e-01	ci right 1.504633e-01	k: 2910	n:20000
Cons ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
KS ci ratio: 4.276280e-02	ci left: 2.894798e-01	ci right 3.021796e-01	k: 5916	n:20000
AMY2A   20000 perm   4 sec   (5159 perm/sec)   p_kst 2.958000e-01   p_cons 1.030000e-02   p_joint 1.455000e-01

Joint ci ratio: 4.753906e-02	ci left: 1.803559e-01	ci right 1.891719e-01	k: 5542	n:30000
Cons ci ratio: 1.971993e-01	ci left: 1.171716e-02	ci right 1.431175e-02	k: 389	n:30000
KS ci ratio: 3.542952e-02	ci left: 2.846371e-01	ci right 2.949370e-01	k: 8693	n:30000
AMY2A   30000 perm   6 sec   (4943 perm/sec)   p_kst 2.897667e-01   p_cons 1.296667e-02   p_joint 1.847333e-01

Joint ci ratio: 4.242750e-02	ci left: 1.721304e-01	ci right 1.796167e-01	k: 7034	n:40000
Cons ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
KS ci ratio: 3.064938e-02	ci left: 2.857800e-01	ci right 2.947004e-01	k: 11609	n:40000
AMY2A   40000 perm   8 sec   (4785 perm/sec)   p_kst 2.902250e-01   p_cons 1.332500e-02   p_joint 1.758500e-01

Joint ci ratio: 4.184625e-02	ci left: 1.461668e-01	ci right 1.524340e-01	k: 7464	n:50000
Cons ci ratio: 1.516904e-01	ci left: 1.217946e-02	ci right 1.419765e-02	k: 658	n:50000
KS ci ratio: 2.753188e-02	ci left: 2.844913e-01	ci right 2.924533e-01	k: 14423	n:50000
AMY2A   50000 perm   11 sec   (4658 perm/sec)   p_kst 2.884600e-01   p_cons 1.316000e-02   p_joint 1.492800e-01

Joint ci ratio: 3.933219e-02	ci left: 1.392326e-01	ci right 1.448354e-01	k: 8521	n:60000
Cons ci ratio: 1.398057e-01	ci left: 1.202846e-02	ci right 1.385244e-02	k: 775	n:60000
KS ci ratio: 2.520140e-02	ci left: 2.837311e-01	ci right 2.909895e-01	k: 17241	n:60000
AMY2A   60000 perm   13 sec   (4562 perm/sec)   p_kst 2.873500e-01   p_cons 1.291667e-02   p_joint 1.420167e-01

Joint ci ratio: 4.659795e-02	ci left: 8.967081e-02	ci right 9.396310e-02	k: 6426	n:70000
Cons ci ratio: 1.280335e-01	ci left: 1.236761e-02	ci right 1.407310e-02	k: 924	n:70000
KS ci ratio: 2.315472e-02	ci left: 2.871242e-01	ci right 2.938646e-01	k: 20334	n:70000
AMY2A   70000 perm   16 sec   (4472 perm/sec)   p_kst 2.904857e-01   p_cons 1.320000e-02   p_joint 9.180000e-02

Joint ci ratio: 3.904406e-02	ci left: 1.097110e-01	ci right 1.140922e-01	k: 8951	n:80000
Cons ci ratio: 1.193159e-01	ci left: 1.251762e-02	ci right 1.411796e-02	k: 1064	n:80000
KS ci ratio: 2.163761e-02	ci left: 2.877541e-01	ci right 2.940610e-01	k: 23272	n:80000
AMY2A   80000 perm   18 sec   (4387 perm/sec)   p_kst 2.909000e-01   p_cons 1.330000e-02   p_joint 1.118875e-01

Joint ci ratio: 3.716736e-02	ci left: 1.079518e-01	ci right 1.120511e-01	k: 9899	n:90000
Cons ci ratio: 1.121194e-01	ci left: 1.264817e-02	ci right 1.416122e-02	k: 1205	n:90000
KS ci ratio: 2.037058e-02	ci left: 2.885322e-01	ci right 2.944813e-01	k: 26235	n:90000
AMY2A   90000 perm   21 sec   (4313 perm/sec)   p_kst 2.915000e-01   p_cons 1.338889e-02   p_joint 1.099889e-01

Joint ci ratio: 3.547787e-02	ci left: 1.068665e-01	ci right 1.107362e-01	k: 10879	n:100000
Cons ci ratio: 1.060853e-01	ci left: 1.275492e-02	ci right 1.419350e-02	k: 1346	n:100000
KS ci ratio: 1.932014e-02	ci left: 2.887941e-01	ci right 2.944380e-01	k: 29161	n:100000
AMY2A   100000 perm   24 sec   (4238 perm/sec)   p_kst 2.916100e-01   p_cons 1.346000e-02   p_joint 1.087900e-01

Joint ci ratio: 2.760493e-02	ci left: 1.527755e-01	ci right 1.570609e-01	k: 17040	n:110000
Cons ci ratio: 1.007597e-01	ci left: 1.288838e-02	ci right 1.426471e-02	k: 1492	n:110000
KS ci ratio: 1.844221e-02	ci left: 2.884527e-01	ci right 2.938310e-01	k: 32025	n:110000
AMY2A   110000 perm   26 sec   (4166 perm/sec)   p_kst 2.911364e-01   p_cons 1.356364e-02   p_joint 1.549091e-01

Joint ci ratio: 2.769670e-02	ci left: 1.410652e-01	ci right 1.450354e-01	k: 17165	n:120000
Cons ci ratio: 9.649193e-02	ci left: 1.291161e-02	ci right 1.422872e-02	k: 1627	n:120000
KS ci ratio: 1.765260e-02	ci left: 2.886720e-01	ci right 2.938214e-01	k: 34949	n:120000
AMY2A   120000 perm   29 sec   (4100 perm/sec)   p_kst 2.912417e-01   p_cons 1.355833e-02   p_joint 1.430417e-01

Outputting figure to mutsig2_images.part000000000007/AMY2A.4_1576_120000_0.29124_0.013558_0.14304.png
                gene_name: AMY2A
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
ANAPC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
Cons ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
KS ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
ANAPC7   10000 perm   2 sec   (5549 perm/sec)   p_kst 7.920000e-02   p_cons 1.979000e-01   p_joint 1.037000e-01

Joint ci ratio: 1.141814e-01	ci left: 5.246402e-02	ci right 5.886593e-02	k: 1112	n:20000
Cons ci ratio: 5.594393e-02	ci left: 1.915566e-01	ci right 2.026316e-01	k: 3941	n:20000
KS ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
ANAPC7   20000 perm   4 sec   (4988 perm/sec)   p_kst 8.295000e-02   p_cons 1.970500e-01   p_joint 5.560000e-02

Joint ci ratio: 7.248206e-02	ci left: 8.560441e-02	ci right 9.207547e-02	k: 2664	n:30000
Cons ci ratio: 4.557266e-02	ci left: 1.933052e-01	ci right 2.023534e-01	k: 5934	n:30000
KS ci ratio: 7.542388e-02	ci left: 7.947611e-02	ci right 8.573834e-02	k: 2477	n:30000
ANAPC7   30000 perm   6 sec   (4769 perm/sec)   p_kst 8.256667e-02   p_cons 1.978000e-01   p_joint 8.880000e-02

Outputting figure to mutsig2_images.part000000000007/ANAPC7.4_1848_30000_0.082567_0.1978_0.0888.png
                gene_name: ANAPC7
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 52 percent done.
ANGEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
Cons ci ratio: 4.692793e-02	ci left: 4.012342e-01	ci right 4.206178e-01	k: 4109	n:10000
KS ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
ANGEL1   10000 perm   2 sec   (5848 perm/sec)   p_kst 4.877000e-01   p_cons 4.109000e-01   p_joint 6.019000e-01

Outputting figure to mutsig2_images.part000000000007/ANGEL1.4_2053_10000_0.4877_0.4109_0.6019.png
                gene_name: ANGEL1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 53 percent done.
ANGPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
Cons ci ratio: 3.120255e-02	ci left: 6.024681e-01	ci right 6.216665e-01	k: 6121	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
ANGPT2   10000 perm   2 sec   (5887 perm/sec)   p_kst 2.938000e-01   p_cons 6.121000e-01   p_joint 5.161000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPT2.4_1527_10000_0.2938_0.6121_0.5161.png
                gene_name: ANGPT2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 55 percent done.
ANGPTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
KS ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
ANGPTL2   10000 perm   2 sec   (5733 perm/sec)   p_kst 2.830000e-02   p_cons 2.241000e-01   p_joint 7.680000e-02

Joint ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
Cons ci ratio: 5.104793e-02	ci left: 2.218536e-01	ci right 2.335257e-01	k: 4553	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
ANGPTL2   20000 perm   4 sec   (5137 perm/sec)   p_kst 2.930000e-02   p_cons 2.276500e-01   p_joint 4.895000e-02

Joint ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
Cons ci ratio: 4.160962e-02	ci left: 2.235270e-01	ci right 2.330590e-01	k: 6848	n:30000
KS ci ratio: 1.306482e-01	ci left: 2.722700e-02	ci right 3.106491e-02	k: 873	n:30000
ANGPTL2   30000 perm   6 sec   (4883 perm/sec)   p_kst 2.910000e-02   p_cons 2.282667e-01   p_joint 5.153333e-02

Joint ci ratio: 9.326006e-02	ci left: 4.032391e-02	ci right 4.429288e-02	k: 1691	n:40000
Cons ci ratio: 3.483294e-02	ci left: 2.362684e-01	ci right 2.446693e-01	k: 9618	n:40000
KS ci ratio: 1.138684e-01	ci left: 2.713420e-02	ci right 3.043468e-02	k: 1150	n:40000
ANGPTL2   40000 perm   8 sec   (4737 perm/sec)   p_kst 2.875000e-02   p_cons 2.404500e-01   p_joint 4.227500e-02

Joint ci ratio: 9.804437e-02	ci left: 2.945906e-02	ci right 3.251571e-02	k: 1548	n:50000
Cons ci ratio: 3.101590e-02	ci left: 2.383504e-01	ci right 2.458795e-01	k: 12105	n:50000
KS ci ratio: 1.017653e-01	ci left: 2.735147e-02	ci right 3.030357e-02	k: 1440	n:50000
ANGPTL2   50000 perm   11 sec   (4621 perm/sec)   p_kst 2.880000e-02   p_cons 2.421000e-01   p_joint 3.096000e-02

Joint ci ratio: 9.246469e-02	ci left: 2.773695e-02	ci right 3.044219e-02	k: 1744	n:60000
Cons ci ratio: 2.831122e-02	ci left: 2.387099e-01	ci right 2.455817e-01	k: 14528	n:60000
KS ci ratio: 9.351870e-02	ci left: 2.711794e-02	ci right 2.979460e-02	k: 1706	n:60000
ANGPTL2   60000 perm   13 sec   (4522 perm/sec)   p_kst 2.843333e-02   p_cons 2.421333e-01   p_joint 2.906667e-02

Outputting figure to mutsig2_images.part000000000007/ANGPTL2.4_1498_60000_0.028433_0.24213_0.029067.png
                gene_name: ANGPTL2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 56 percent done.
ANGPTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
Cons ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
KS ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
ANGPTL5   10000 perm   2 sec   (5970 perm/sec)   p_kst 4.055000e-01   p_cons 1.584000e-01   p_joint 3.315000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL5.4_1199_10000_0.4055_0.1584_0.3315.png
                gene_name: ANGPTL5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
ANKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
Cons ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
KS ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
ANKAR   10000 perm   2 sec   (4796 perm/sec)   p_kst 2.106000e-01   p_cons 2.865000e-01   p_joint 2.391000e-01

Outputting figure to mutsig2_images.part000000000007/ANKAR.4_4393_10000_0.2106_0.2865_0.2391.png
                gene_name: ANKAR
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 60 percent done.
ANKMY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
Cons ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
KS ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
ANKMY2   10000 perm   2 sec   (5807 perm/sec)   p_kst 7.479000e-01   p_cons 2.919000e-01   p_joint 5.801000e-01

Outputting figure to mutsig2_images.part000000000007/ANKMY2.4_1366_10000_0.7479_0.2919_0.5801.png
                gene_name: ANKMY2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 61 percent done.
ALPPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
Cons ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
KS ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
ALPPL2   10000 perm   2 sec   (6127 perm/sec)   p_kst 7.900000e-01   p_cons 1.324000e-01   p_joint 3.813000e-01

Joint ci ratio: 2.981915e-02	ci left: 4.565697e-01	ci right 4.704409e-01	k: 9270	n:20000
Cons ci ratio: 7.124930e-02	ci left: 1.267467e-01	ci right 1.361607e-01	k: 2628	n:20000
KS ci ratio: 1.433653e-02	ci left: 7.832280e-01	ci right 7.945879e-01	k: 15779	n:20000
ALPPL2   20000 perm   4 sec   (5403 perm/sec)   p_kst 7.889500e-01   p_cons 1.314000e-01   p_joint 4.635000e-01

Outputting figure to mutsig2_images.part000000000007/ALPPL2.3_1643_20000_0.78895_0.1314_0.4635.png
                gene_name: ALPPL2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 63 percent done.
ALS2CL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
ALS2CL   10000 perm   2 sec   (5514 perm/sec)   p_kst 3.130000e-01   p_cons 3.542000e-01   p_joint 2.449000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CL.3_2962_10000_0.313_0.3542_0.2449.png
                gene_name: ALS2CL
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 65 percent done.
ALS2CR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
ALS2CR11   10000 perm   2 sec   (4702 perm/sec)   p_kst 3.513000e-01   p_cons 1.405000e-01   p_joint 2.825000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CR11.3_5674_10000_0.3513_0.1405_0.2825.png
                gene_name: ALS2CR11
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 66 percent done.
AMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
Cons ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
KS ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
AMBP   10000 perm   2 sec   (6471 perm/sec)   p_kst 5.399000e-01   p_cons 2.970000e-02   p_joint 4.009000e-01

Joint ci ratio: 9.004739e-02	ci left: 8.263952e-02	ci right 9.048117e-02	k: 1730	n:20000
Cons ci ratio: 1.612488e-01	ci left: 2.638175e-02	ci right 3.105661e-02	k: 573	n:20000
KS ci ratio: 2.592833e-02	ci left: 5.263564e-01	ci right 5.402339e-01	k: 10666	n:20000
AMBP   20000 perm   4 sec   (5703 perm/sec)   p_kst 5.333000e-01   p_cons 2.865000e-02   p_joint 8.650000e-02

Joint ci ratio: 7.669614e-02	ci left: 7.701969e-02	ci right 8.319525e-02	k: 2402	n:30000
Cons ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
KS ci ratio: 2.117796e-02	ci left: 5.274682e-01	ci right 5.387921e-01	k: 15994	n:30000
AMBP   30000 perm   6 sec   (5391 perm/sec)   p_kst 5.331333e-01   p_cons 2.866667e-02   p_joint 8.006667e-02

Joint ci ratio: 5.482409e-02	ci left: 1.102095e-01	ci right 1.164468e-01	k: 4532	n:40000
Cons ci ratio: 1.134127e-01	ci left: 2.735298e-02	ci right 3.066587e-02	k: 1159	n:40000
KS ci ratio: 1.825385e-02	ci left: 5.305975e-01	ci right 5.403973e-01	k: 21420	n:40000
AMBP   40000 perm   8 sec   (5222 perm/sec)   p_kst 5.355000e-01   p_cons 2.897500e-02   p_joint 1.133000e-01

Joint ci ratio: 4.457762e-02	ci left: 1.309462e-01	ci right 1.369364e-01	k: 6696	n:50000
Cons ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
KS ci ratio: 1.626787e-02	ci left: 5.329175e-01	ci right 5.416781e-01	k: 26865	n:50000
AMBP   50000 perm   10 sec   (5082 perm/sec)   p_kst 5.373000e-01   p_cons 3.092000e-02   p_joint 1.339200e-01

Outputting figure to mutsig2_images.part000000000007/AMBP.3_1099_50000_0.5373_0.03092_0.13392.png
                gene_name: AMBP
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
AMBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
KS ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
AMBRA1   10000 perm   2 sec   (5236 perm/sec)   p_kst 8.885000e-01   p_cons 3.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMBRA1.3_3699_10000_0.8885_0.3193_1.png
                gene_name: AMBRA1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
AMDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
Cons ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KS ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
AMDHD1   10000 perm   2 sec   (6130 perm/sec)   p_kst 4.200000e-03   p_cons 5.856000e-01   p_joint 1.220000e-02

Joint ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
Cons ci ratio: 2.331608e-02	ci left: 5.787357e-01	ci right 5.924394e-01	k: 11712	n:20000
KS ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
AMDHD1   20000 perm   4 sec   (5441 perm/sec)   p_kst 4.700000e-03   p_cons 5.856000e-01   p_joint 1.695000e-02

Joint ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
Cons ci ratio: 1.904702e-02	ci left: 5.797671e-01	ci right 5.909497e-01	k: 17561	n:30000
KS ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
AMDHD1   30000 perm   6 sec   (5168 perm/sec)   p_kst 4.433333e-03   p_cons 5.853667e-01   p_joint 1.106667e-02

Joint ci ratio: 1.272475e-01	ci left: 2.169850e-02	ci right 2.467128e-02	k: 926	n:40000
Cons ci ratio: 1.655461e-02	ci left: 5.787757e-01	ci right 5.884622e-01	k: 23345	n:40000
KS ci ratio: 2.867557e-01	ci left: 3.983757e-03	ci right 5.339698e-03	k: 185	n:40000
AMDHD1   40000 perm   8 sec   (5005 perm/sec)   p_kst 4.625000e-03   p_cons 5.836250e-01   p_joint 2.315000e-02

Joint ci ratio: 1.286856e-01	ci left: 1.704635e-02	ci right 1.941006e-02	k: 910	n:50000
Cons ci ratio: 1.481688e-02	ci left: 5.789639e-01	ci right 5.876264e-01	k: 29165	n:50000
KS ci ratio: 2.545648e-01	ci left: 4.119406e-03	ci right 5.339191e-03	k: 235	n:50000
AMDHD1   50000 perm   10 sec   (4878 perm/sec)   p_kst 4.700000e-03   p_cons 5.833000e-01   p_joint 1.820000e-02

Joint ci ratio: 7.170228e-02	ci left: 4.574609e-02	ci right 4.916452e-02	k: 2846	n:60000
Cons ci ratio: 1.354497e-02	ci left: 5.786586e-01	ci right 5.865667e-01	k: 34957	n:60000
KS ci ratio: 2.300303e-01	ci left: 4.262702e-03	ci right 5.386019e-03	k: 288	n:60000
AMDHD1   60000 perm   13 sec   (4754 perm/sec)   p_kst 4.800000e-03   p_cons 5.826167e-01   p_joint 4.743333e-02

Joint ci ratio: 1.087334e-01	ci left: 1.723652e-02	ci right 1.923227e-02	k: 1275	n:70000
Cons ci ratio: 1.252374e-02	ci left: 5.795943e-01	ci right 5.869130e-01	k: 40828	n:70000
KS ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
AMDHD1   70000 perm   15 sec   (4652 perm/sec)   p_kst 4.757143e-03   p_cons 5.832571e-01   p_joint 1.821429e-02

Joint ci ratio: 1.014027e-01	ci left: 1.740683e-02	ci right 1.927833e-02	k: 1466	n:80000
Cons ci ratio: 1.172020e-02	ci left: 5.796116e-01	ci right 5.864573e-01	k: 46643	n:80000
KS ci ratio: 1.987810e-01	ci left: 4.356603e-03	ci right 5.329840e-03	k: 386	n:80000
AMDHD1   80000 perm   18 sec   (4556 perm/sec)   p_kst 4.825000e-03   p_cons 5.830375e-01   p_joint 1.832500e-02

Joint ci ratio: 9.609019e-02	ci left: 1.728243e-02	ci right 1.903771e-02	k: 1633	n:90000
Cons ci ratio: 1.101874e-02	ci left: 5.811832e-01	ci right 5.876336e-01	k: 52597	n:90000
KS ci ratio: 1.866335e-01	ci left: 4.422474e-03	ci right 5.343217e-03	k: 438	n:90000
AMDHD1   90000 perm   20 sec   (4470 perm/sec)   p_kst 4.866667e-03   p_cons 5.844111e-01   p_joint 1.814444e-02

Joint ci ratio: 9.200293e-02	ci left: 1.700904e-02	ci right 1.865910e-02	k: 1782	n:100000
Cons ci ratio: 1.042860e-02	ci left: 5.824993e-01	ci right 5.886157e-01	k: 58556	n:100000
KS ci ratio: 1.577111e-01	ci left: 5.655594e-03	ci right 6.633383e-03	k: 613	n:100000
AMDHD1   100000 perm   23 sec   (4394 perm/sec)   p_kst 6.130000e-03   p_cons 5.855600e-01   p_joint 1.782000e-02

Joint ci ratio: 9.086899e-02	ci left: 1.587984e-02	ci right 1.740034e-02	k: 1829	n:110000
Cons ci ratio: 9.950858e-03	ci left: 5.822726e-01	ci right 5.881047e-01	k: 64371	n:110000
KS ci ratio: 1.498591e-01	ci left: 5.718384e-03	ci right 6.653394e-03	k: 679	n:110000
AMDHD1   110000 perm   25 sec   (4319 perm/sec)   p_kst 6.172727e-03   p_cons 5.851909e-01   p_joint 1.662727e-02

Joint ci ratio: 8.727569e-02	ci left: 1.581124e-02	ci right 1.726226e-02	k: 1983	n:120000
Cons ci ratio: 9.532776e-03	ci left: 5.821143e-01	ci right 5.876983e-01	k: 70189	n:120000
KS ci ratio: 1.436565e-01	ci left: 5.723498e-03	ci right 6.617287e-03	k: 739	n:120000
AMDHD1   120000 perm   28 sec   (4247 perm/sec)   p_kst 6.158333e-03   p_cons 5.849083e-01   p_joint 1.652500e-02

Joint ci ratio: 8.401757e-02	ci left: 1.577681e-02	ci right 1.716796e-02	k: 2140	n:130000
Cons ci ratio: 9.146487e-03	ci left: 5.828779e-01	ci right 5.882413e-01	k: 76123	n:130000
KS ci ratio: 1.388657e-01	ci left: 5.669082e-03	ci right 6.522406e-03	k: 791	n:130000
AMDHD1   130000 perm   31 sec   (4176 perm/sec)   p_kst 6.084615e-03   p_cons 5.855615e-01   p_joint 1.646154e-02

Joint ci ratio: 8.093804e-02	ci left: 1.581117e-02	ci right 1.715183e-02	k: 2306	n:140000
Cons ci ratio: 8.818012e-03	ci left: 5.827426e-01	ci right 5.879110e-01	k: 81946	n:140000
KS ci ratio: 1.342843e-01	ci left: 5.643578e-03	ci right 6.462797e-03	k: 846	n:140000
AMDHD1   140000 perm   34 sec   (4108 perm/sec)   p_kst 6.042857e-03   p_cons 5.853286e-01   p_joint 1.647143e-02

Joint ci ratio: 7.802983e-02	ci left: 1.590059e-02	ci right 1.719819e-02	k: 2481	n:150000
Cons ci ratio: 8.521153e-03	ci left: 5.827084e-01	ci right 5.877016e-01	k: 87781	n:150000
KS ci ratio: 1.290531e-01	ci left: 5.718652e-03	ci right 6.513954e-03	k: 916	n:150000
AMDHD1   150000 perm   37 sec   (4048 perm/sec)   p_kst 6.106667e-03   p_cons 5.852067e-01   p_joint 1.654000e-02

Joint ci ratio: 1.019807e-01	ci left: 8.683139e-03	ci right 9.622276e-03	k: 1463	n:160000
Cons ci ratio: 8.240071e-03	ci left: 5.834067e-01	ci right 5.882401e-01	k: 93732	n:160000
KS ci ratio: 1.260050e-01	ci left: 5.633498e-03	ci right 6.397069e-03	k: 961	n:160000
AMDHD1   160000 perm   40 sec   (3990 perm/sec)   p_kst 6.006250e-03   p_cons 5.858250e-01   p_joint 9.143750e-03

Joint ci ratio: 7.374991e-02	ci left: 1.574381e-02	ci right 1.695512e-02	k: 2778	n:170000
Cons ci ratio: 7.994168e-03	ci left: 5.834717e-01	ci right 5.881606e-01	k: 99589	n:170000
KS ci ratio: 1.223708e-01	ci left: 5.632693e-03	ci right 6.372541e-03	k: 1019	n:170000
AMDHD1   170000 perm   43 sec   (3931 perm/sec)   p_kst 5.994118e-03   p_cons 5.858176e-01   p_joint 1.634118e-02

Joint ci ratio: 7.167787e-02	ci left: 1.575825e-02	ci right 1.693518e-02	k: 2941	n:180000
Cons ci ratio: 7.770020e-03	ci left: 5.834702e-01	ci right 5.880270e-01	k: 105435	n:180000
KS ci ratio: 1.190340e-01	ci left: 5.632260e-03	ci right 6.350458e-03	k: 1077	n:180000
AMDHD1   180000 perm   46 sec   (3871 perm/sec)   p_kst 5.983333e-03   p_cons 5.857500e-01   p_joint 1.633889e-02

Joint ci ratio: 6.995466e-02	ci left: 1.568883e-02	ci right 1.683126e-02	k: 3088	n:190000
Cons ci ratio: 7.560448e-03	ci left: 5.836813e-01	ci right 5.881161e-01	k: 111321	n:190000
KS ci ratio: 1.160589e-01	ci left: 5.621894e-03	ci right 6.319624e-03	k: 1133	n:190000
AMDHD1   190000 perm   50 sec   (3800 perm/sec)   p_kst 5.963158e-03   p_cons 5.859000e-01   p_joint 1.625263e-02

Joint ci ratio: 6.815759e-02	ci left: 1.571515e-02	ci right 1.682893e-02	k: 3253	n:200000
Cons ci ratio: 7.145618e-03	ci left: 5.986047e-01	ci right 6.029024e-01	k: 120151	n:200000
KS ci ratio: 1.133442e-01	ci left: 5.607907e-03	ci right 6.286532e-03	k: 1188	n:200000
AMDHD1   200000 perm   53 sec   (3746 perm/sec)   p_kst 5.940000e-03   p_cons 6.007550e-01   p_joint 1.626500e-02

Joint ci ratio: 6.379507e-02	ci left: 1.709814e-02	ci right 1.822952e-02	k: 3708	n:210000
Cons ci ratio: 6.974141e-03	ci left: 5.986063e-01	ci right 6.028004e-01	k: 126148	n:210000
KS ci ratio: 1.131691e-01	ci left: 5.359333e-03	ci right 6.006807e-03	k: 1192	n:210000
AMDHD1   210000 perm   57 sec   (3693 perm/sec)   p_kst 5.676190e-03   p_cons 6.007048e-01   p_joint 1.765714e-02

Joint ci ratio: 6.244803e-02	ci left: 1.704568e-02	ci right 1.814890e-02	k: 3870	n:220000
Cons ci ratio: 6.813024e-03	ci left: 5.987090e-01	ci right 6.028065e-01	k: 132167	n:220000
KS ci ratio: 1.108713e-01	ci left: 5.336628e-03	ci right 5.967413e-03	k: 1242	n:220000
AMDHD1   220000 perm   60 sec   (3642 perm/sec)   p_kst 5.645455e-03   p_cons 6.007591e-01   p_joint 1.759091e-02

Joint ci ratio: 6.093723e-02	ci left: 1.713505e-02	ci right 1.821628e-02	k: 4064	n:230000
Cons ci ratio: 6.659563e-03	ci left: 5.990214e-01	ci right 6.030282e-01	k: 138236	n:230000
KS ci ratio: 1.085393e-01	ci left: 5.332941e-03	ci right 5.949183e-03	k: 1296	n:230000
AMDHD1   230000 perm   64 sec   (3591 perm/sec)   p_kst 5.634783e-03   p_cons 6.010261e-01   p_joint 1.766957e-02

Joint ci ratio: 5.971686e-02	ci left: 1.711052e-02	ci right 1.816784e-02	k: 4232	n:240000
Cons ci ratio: 6.519815e-03	ci left: 5.990292e-01	ci right 6.029517e-01	k: 144238	n:240000
KS ci ratio: 1.067466e-01	ci left: 5.289126e-03	ci right 5.889576e-03	k: 1340	n:240000
AMDHD1   240000 perm   68 sec   (3544 perm/sec)   p_kst 5.583333e-03   p_cons 6.009917e-01   p_joint 1.763333e-02

Joint ci ratio: 5.836482e-02	ci left: 1.720643e-02	ci right 1.824479e-02	k: 4430	n:250000
Cons ci ratio: 6.389683e-03	ci left: 5.989492e-01	ci right 6.027925e-01	k: 150218	n:250000
KS ci ratio: 1.050017e-01	ci left: 5.252789e-03	ci right 5.838764e-03	k: 1385	n:250000
AMDHD1   250000 perm   71 sec   (3498 perm/sec)   p_kst 5.540000e-03   p_cons 6.008720e-01   p_joint 1.772000e-02

Joint ci ratio: 5.720766e-02	ci left: 1.723075e-02	ci right 1.824927e-02	k: 4611	n:260000
Cons ci ratio: 6.266591e-03	ci left: 5.989107e-01	ci right 6.026794e-01	k: 156207	n:260000
KS ci ratio: 1.030504e-01	ci left: 5.249300e-03	ci right 5.823345e-03	k: 1438	n:260000
AMDHD1   260000 perm   75 sec   (3452 perm/sec)   p_kst 5.530769e-03   p_cons 6.007962e-01   p_joint 1.773462e-02

Joint ci ratio: 5.627229e-02	ci left: 1.715848e-02	ci right 1.815561e-02	k: 4766	n:270000
Cons ci ratio: 6.150255e-03	ci left: 5.988831e-01	ci right 6.025814e-01	k: 162198	n:270000
KS ci ratio: 1.011358e-01	ci left: 5.253385e-03	ci right 5.816568e-03	k: 1493	n:270000
AMDHD1   270000 perm   79 sec   (3410 perm/sec)   p_kst 5.529630e-03   p_cons 6.007333e-01   p_joint 1.765185e-02

Joint ci ratio: 5.517630e-02	ci left: 1.721833e-02	ci right 1.819883e-02	k: 4957	n:280000
Cons ci ratio: 6.037468e-03	ci left: 5.990726e-01	ci right 6.027039e-01	k: 168249	n:280000
KS ci ratio: 9.948576e-02	ci left: 5.239853e-03	ci right 5.791886e-03	k: 1543	n:280000
AMDHD1   280000 perm   83 sec   (3368 perm/sec)   p_kst 5.510714e-03   p_cons 6.008893e-01   p_joint 1.770357e-02

Outputting figure to mutsig2_images.part000000000007/AMDHD1.3_1317_280000_0.0055107_0.60089_0.017704.png
                gene_name: AMDHD1
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 71 percent done.
AMELY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
Cons ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
KS ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
AMELY   10000 perm   1 sec   (6805 perm/sec)   p_kst 5.730000e-01   p_cons 4.048000e-01   p_joint 6.521000e-01

Outputting figure to mutsig2_images.part000000000007/AMELY.3_599_10000_0.573_0.4048_0.6521.png
                gene_name: AMELY
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 73 percent done.
AMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
KS ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
AMPD2   10000 perm   2 sec   (5589 perm/sec)   p_kst 7.164000e-01   p_cons 6.811000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMPD2.3_2753_10000_0.7164_0.6811_1.png
                gene_name: AMPD2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
AMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
KS ci ratio: 8.751644e-03	ci left: 9.482515e-01	ci right 9.566824e-01	k: 9526	n:10000
AMPD3   10000 perm   2 sec   (5711 perm/sec)   p_kst 9.526000e-01   p_cons 9.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMPD3.3_2411_10000_0.9526_0.9588_1.png
                gene_name: AMPD3
               theta_stop: 0.0088 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ANAPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
KS ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
ANAPC5   10000 perm   2 sec   (5714 perm/sec)   p_kst 4.560000e-02   p_cons 8.157000e-01   p_joint 7.200000e-02

Joint ci ratio: 8.567560e-02	ci left: 9.067620e-02	ci right 9.884206e-02	k: 1894	n:20000
Cons ci ratio: 1.311018e-02	ci left: 8.117725e-01	ci right 8.225352e-01	k: 16344	n:20000
KS ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
ANAPC5   20000 perm   4 sec   (5117 perm/sec)   p_kst 4.520000e-02   p_cons 8.172000e-01   p_joint 9.470000e-02

Joint ci ratio: 7.709795e-02	ci left: 7.626656e-02	ci right 8.241520e-02	k: 2379	n:30000
Cons ci ratio: 1.051517e-02	ci left: 8.180948e-01	ci right 8.267760e-01	k: 24674	n:30000
KS ci ratio: 1.042188e-01	ci left: 4.268167e-02	ci right 4.740695e-02	k: 1350	n:30000
ANAPC5   30000 perm   6 sec   (4862 perm/sec)   p_kst 4.500000e-02   p_cons 8.224667e-01   p_joint 7.930000e-02

Joint ci ratio: 6.692184e-02	ci left: 7.635012e-02	ci right 8.166119e-02	k: 3159	n:40000
Cons ci ratio: 9.083482e-03	ci left: 8.194255e-01	ci right 8.269276e-01	k: 32928	n:40000
KS ci ratio: 8.979630e-02	ci left: 4.342937e-02	ci right 4.753694e-02	k: 1818	n:40000
ANAPC5   40000 perm   9 sec   (4679 perm/sec)   p_kst 4.545000e-02   p_cons 8.232000e-01   p_joint 7.897500e-02

Outputting figure to mutsig2_images.part000000000007/ANAPC5.3_2336_40000_0.04545_0.8232_0.078975.png
                gene_name: ANAPC5
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 77 percent done.
ANGEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
ANGEL2   10000 perm   2 sec   (6202 perm/sec)   p_kst 8.528000e-01   p_cons 3.225000e-01   p_joint 5.962000e-01

Outputting figure to mutsig2_images.part000000000007/ANGEL2.3_1671_10000_0.8528_0.3225_0.5962.png
                gene_name: ANGEL2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 79 percent done.
ANKFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 1.229451e-02	ci left: 9.047348e-01	ci right 9.160249e-01	k: 9105	n:10000
ANKFY1   10000 perm   2 sec   (5347 perm/sec)   p_kst 9.105000e-01   p_cons 3.043000e-01   p_joint 9.942000e-01

Outputting figure to mutsig2_images.part000000000007/ANKFY1.3_3705_10000_0.9105_0.3043_0.9942.png
                gene_name: ANKFY1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 81 percent done.
ALPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
Cons ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
KS ci ratio: 1.841699e-02	ci left: 8.115144e-01	ci right 8.266992e-01	k: 8192	n:10000
ALPL   10000 perm   2 sec   (6374 perm/sec)   p_kst 8.192000e-01   p_cons 2.340000e-01   p_joint 9.451000e-01

Outputting figure to mutsig2_images.part000000000007/ALPL.2_1619_10000_0.8192_0.234_0.9451.png
                gene_name: ALPL
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 82 percent done.
AMBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
AMBN   10000 perm   2 sec   (6431 perm/sec)   p_kst 6.368000e-01   p_cons 3.300000e-02   p_joint 3.982000e-01

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 1.487662e-01	ci left: 3.104924e-02	ci right 3.608756e-02	k: 670	n:20000
KS ci ratio: 2.071589e-02	ci left: 6.349090e-01	ci right 6.482499e-01	k: 12832	n:20000
AMBN   20000 perm   4 sec   (5710 perm/sec)   p_kst 6.416000e-01   p_cons 3.350000e-02   p_joint 6.905000e-02

Joint ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
Cons ci ratio: 1.200861e-01	ci left: 3.223670e-02	ci right 3.638746e-02	k: 1028	n:30000
KS ci ratio: 1.692084e-02	ci left: 6.359763e-01	ci right 6.468629e-01	k: 19243	n:30000
AMBN   30000 perm   6 sec   (5424 perm/sec)   p_kst 6.414333e-01   p_cons 3.426667e-02   p_joint 6.726667e-02

Joint ci ratio: 8.126252e-02	ci left: 5.273666e-02	ci right 5.722822e-02	k: 2198	n:40000
Cons ci ratio: 1.040766e-01	ci left: 3.246471e-02	ci right 3.605332e-02	k: 1369	n:40000
KS ci ratio: 1.465903e-02	ci left: 6.365521e-01	ci right 6.459774e-01	k: 25651	n:40000
AMBN   40000 perm   8 sec   (5236 perm/sec)   p_kst 6.412750e-01   p_cons 3.422500e-02   p_joint 5.495000e-02

Joint ci ratio: 6.749354e-02	ci left: 6.106294e-02	ci right 6.534794e-02	k: 3159	n:50000
Cons ci ratio: 9.243444e-02	ci left: 3.311286e-02	ci right 3.634145e-02	k: 1735	n:50000
KS ci ratio: 1.312104e-02	ci left: 6.367170e-01	ci right 6.451466e-01	k: 32047	n:50000
AMBN   50000 perm   10 sec   (5101 perm/sec)   p_kst 6.409400e-01   p_cons 3.470000e-02   p_joint 6.318000e-02

Outputting figure to mutsig2_images.part000000000007/AMBN.2_1396_50000_0.64094_0.0347_0.06318.png
                gene_name: AMBN
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 84 percent done.
AMFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
Cons ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
KS ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
AMFR   10000 perm   2 sec   (6401 perm/sec)   p_kst 1.671000e-01   p_cons 1.840000e-01   p_joint 1.599000e-01

Outputting figure to mutsig2_images.part000000000007/AMFR.2_1988_10000_0.1671_0.184_0.1599.png
                gene_name: AMFR
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 85 percent done.
AMHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
AMHR2   10000 perm   2 sec   (6265 perm/sec)   p_kst 8.152000e-01   p_cons 9.958000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMHR2.2_1766_10000_0.8152_0.9958_1.png
                gene_name: AMHR2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
AMMECR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
Cons ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
KS ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
AMMECR1   10000 perm   1 sec   (6685 perm/sec)   p_kst 2.254000e-01   p_cons 1.886000e-01   p_joint 4.147000e-01

Outputting figure to mutsig2_images.part000000000007/AMMECR1.2_1026_10000_0.2254_0.1886_0.4147.png
                gene_name: AMMECR1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 89 percent done.
AMMECR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
Cons ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KS ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
AMMECR1L   10000 perm   1 sec   (6881 perm/sec)   p_kst 8.319000e-01   p_cons 6.282000e-01   p_joint 9.898000e-01

Outputting figure to mutsig2_images.part000000000007/AMMECR1L.2_957_10000_0.8319_0.6282_0.9898.png
                gene_name: AMMECR1L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
AMOTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
Cons ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
KS ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
AMOTL2   10000 perm   2 sec   (6015 perm/sec)   p_kst 2.029000e-01   p_cons 4.414000e-01   p_joint 6.680000e-01

Outputting figure to mutsig2_images.part000000000007/AMOTL2.2_2379_10000_0.2029_0.4414_0.668.png
                gene_name: AMOTL2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 92 percent done.
AMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
Cons ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
KS ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
AMT   10000 perm   2 sec   (6536 perm/sec)   p_kst 8.319000e-01   p_cons 4.772000e-01   p_joint 9.682000e-01

Outputting figure to mutsig2_images.part000000000007/AMT.2_1276_10000_0.8319_0.4772_0.9682.png
                gene_name: AMT
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 94 percent done.
AMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
AMTN   10000 perm   1 sec   (6849 perm/sec)   p_kst 2.807000e-01   p_cons 4.360000e-02   p_joint 4.500000e-02

Joint ci ratio: 8.865284e-02	ci left: 8.508867e-02	ci right 9.303127e-02	k: 1780	n:20000
Cons ci ratio: 1.313219e-01	ci left: 3.984279e-02	ci right 4.549114e-02	k: 852	n:20000
KS ci ratio: 4.480378e-02	ci left: 2.705574e-01	ci right 2.830076e-01	k: 5535	n:20000
AMTN   20000 perm   3 sec   (6011 perm/sec)   p_kst 2.767500e-01   p_cons 4.260000e-02   p_joint 8.900000e-02

Joint ci ratio: 7.033074e-02	ci left: 9.052364e-02	ci right 9.715526e-02	k: 2814	n:30000
Cons ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
KS ci ratio: 3.646076e-02	ci left: 2.730348e-01	ci right 2.832082e-01	k: 8343	n:30000
AMTN   30000 perm   5 sec   (5719 perm/sec)   p_kst 2.781000e-01   p_cons 4.133333e-02   p_joint 9.380000e-02

Joint ci ratio: 7.605578e-02	ci left: 5.990162e-02	ci right 6.466217e-02	k: 2490	n:40000
Cons ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
KS ci ratio: 3.142594e-02	ci left: 2.756284e-01	ci right 2.844536e-01	k: 11201	n:40000
AMTN   40000 perm   7 sec   (5525 perm/sec)   p_kst 2.800250e-01   p_cons 4.062500e-02   p_joint 6.225000e-02

Outputting figure to mutsig2_images.part000000000007/AMTN.2_662_40000_0.28003_0.040625_0.06225.png
                gene_name: AMTN
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 95 percent done.
ANAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
ANAPC4   10000 perm   2 sec   (5968 perm/sec)   p_kst 7.715000e-01   p_cons 9.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANAPC4.2_2539_10000_0.7715_0.9309_1.png
                gene_name: ANAPC4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ANKDD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.993328e-03	ci left: 9.926212e-01	ci right 9.956801e-01	k: 9943	n:10000
Cons ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
KS ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
ANKDD1A   10000 perm   2 sec   (6229 perm/sec)   p_kst 9.807000e-01   p_cons 7.466000e-01   p_joint 9.943000e-01

Outputting figure to mutsig2_images.part000000000007/ANKDD1A.2_1629_10000_0.9807_0.7466_0.9943.png
                gene_name: ANKDD1A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 98 percent done.
ANKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
Cons ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
KS ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
ANKK1   10000 perm   2 sec   (5983 perm/sec)   p_kst 3.157000e-01   p_cons 2.433000e-01   p_joint 3.520000e-01

Outputting figure to mutsig2_images.part000000000007/ANKK1.2_2330_10000_0.3157_0.2433_0.352.png
                gene_name: ANKK1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000007
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 7 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 4421696: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000008> was used as the working directory.
Started at Wed Oct 24 17:29:53 2012
Results reported at Wed Oct 24 17:45:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000008.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000008.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 8  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000008.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    972.27 sec.
    Max Memory :      5404 MB
    Max Swap   :      7777 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
8
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 8
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 8: processing genes 634 - 724
Calculating significance of each gene.
Using projection method.
634	ANKRD10	1
635	ANKRD11	9.999999e-01
636	ANKRD12	9.191594e-01
637	ANKRD13A	9.195784e-01
638	ANKRD13B	8.939499e-01
639	ANKRD13C	8.631804e-01
640	ANKRD13D	8.750332e-01
641	ANKRD16	6.970018e-01
642	ANKRD17	1
643	ANKRD2	6.017928e-01
644	ANKRD20A1	1
645	ANKRD20A4	2.893038e-01
646	ANKRD22	3.316555e-01
647	ANKRD23	1
648	ANKRD24	2.966953e-01
649	ANKRD26	9.967670e-01
650	ANKRD27	9.808651e-01
651	ANKRD28	9.966276e-01
652	ANKRD29	4.389535e-01
653	ANKRD30A	9.641244e-01
654	ANKRD30B	5.957633e-01
655	ANKRD32	7.919196e-01
656	ANKRD33	9.374670e-01
657	ANKRD34A	6.809821e-02
658	ANKRD34B	2.664913e-01
659	ANKRD35	8.806848e-01
660	ANKRD36	7.862040e-01
661	ANKRD36B	1
662	ANKRD37	5.239040e-01
663	ANKRD39	1
664	ANKRD40	7.197757e-01
665	ANKRD42	1
666	ANKRD44	6.251259e-02
667	ANKRD45	1.190171e-01
668	ANKRD46	7.460966e-01
669	ANKRD49	7.774938e-01
670	ANKRD5	1.061334e-01
671	ANKRD50	1
672	ANKRD52	9.939216e-01
673	ANKRD53	4.422508e-01
674	ANKRD54	1
675	ANKRD55	8.660459e-02
676	ANKRD56	3.028980e-03
677	ANKRD57	5.281986e-01
678	ANKRD6	9.338436e-01
679	ANKRD7	6.037061e-04
680	ANKS1A	1
681	ANKS1B	1.384276e-02
682	ANKS3	9.767660e-01
683	ANKS4B	1
684	ANKS6	9.939401e-01
685	ANKZF1	9.398175e-01
686	ANLN	2.606192e-01
687	ANO1	1
688	ANO10	7.010418e-01
689	ANO2	1.543459e-02
In gene ANO3 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 3054    n = 1	mu =   9.71e-07
690	ANO3	6.645911e-01
691	ANO4	2.552425e-01
692	ANO5	1.972196e-01
693	ANO6	9.882331e-01
694	ANO7	2.552132e-02
695	ANO8	1
696	ANO9	1
697	ANP32A	7.908138e-01
698	ANP32B	1
699	ANP32C	1.463441e-01
700	ANP32D	2.240398e-01
701	ANP32E	3.768184e-01
702	ANPEP	9.975000e-01
703	ANTXR1	6.958149e-01
704	ANTXR2	2.089088e-01
705	ANUBL1	9.860473e-01
706	ANXA1	8.871742e-01
707	ANXA10	3.158351e-01
708	ANXA11	5.214770e-01
709	ANXA13	9.392210e-02
710	ANXA2	5.618159e-01
711	ANXA3	2.720545e-01
712	ANXA4	2.191684e-01
713	ANXA5	5.784558e-01
714	ANXA6	9.511348e-01
715	ANXA7	5.419625e-01
716	ANXA9	7.532636e-01
717	AOAH	2.855397e-01
718	AOC2	9.109163e-01
719	AOC3	8.959338e-01
720	AOX1	9.511451e-01
721	AP1AR	8.058269e-01
722	AP1B1	9.472617e-01
723	AP1G1	9.565527e-01
724	AP1G2	8.923371e-01
Done

Running MutSig 2:
Scatter job 8: processing genes 634 - 724
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANKRD30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
ANKRD30A   10000 perm   2 sec   (4154 perm/sec)   p_kst 4.288000e-01   p_cons 7.808000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD30A.24_4166_10000_0.4288_0.7808_0.649.png
                gene_name: ANKRD30A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 2 percent done.
ANKS1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
Cons ci ratio: 9.892388e-03	ci left: 9.353730e-01	ci right 9.447687e-01	k: 9402	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
ANKS1B   10000 perm   2 sec   (4238 perm/sec)   p_kst 2.230000e-02   p_cons 9.402000e-01   p_joint 5.980000e-02

Joint ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
Cons ci ratio: 6.939795e-03	ci left: 9.376961e-01	ci right 9.442749e-01	k: 18821	n:20000
KS ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
ANKS1B   20000 perm   5 sec   (3864 perm/sec)   p_kst 2.195000e-02   p_cons 9.410500e-01   p_joint 6.230000e-02

Joint ci ratio: 1.094088e-01	ci left: 3.878406e-02	ci right 4.330537e-02	k: 1230	n:30000
Cons ci ratio: 5.686946e-03	ci left: 9.378997e-01	ci right 9.432813e-01	k: 28219	n:30000
KS ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
ANKS1B   30000 perm   8 sec   (3711 perm/sec)   p_kst 2.190000e-02   p_cons 9.406333e-01   p_joint 4.100000e-02

Joint ci ratio: 8.268459e-02	ci left: 5.099609e-02	ci right 5.541905e-02	k: 2127	n:40000
Cons ci ratio: 4.869813e-03	ci left: 9.395373e-01	ci right 9.441483e-01	k: 37675	n:40000
KS ci ratio: 1.316779e-01	ci left: 2.024606e-02	ci right 2.312396e-02	k: 866	n:40000
ANKS1B   40000 perm   11 sec   (3602 perm/sec)   p_kst 2.165000e-02   p_cons 9.418750e-01   p_joint 5.317500e-02

Joint ci ratio: 8.412303e-02	ci left: 3.986648e-02	ci right 4.338699e-02	k: 2080	n:50000
Cons ci ratio: 4.313840e-03	ci left: 9.408507e-01	ci right 9.449377e-01	k: 47146	n:50000
KS ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
ANKS1B   50000 perm   14 sec   (3512 perm/sec)   p_kst 2.148000e-02   p_cons 9.429200e-01   p_joint 4.160000e-02

Joint ci ratio: 7.572718e-02	ci left: 4.112880e-02	ci right 4.438228e-02	k: 2564	n:60000
Cons ci ratio: 3.932524e-03	ci left: 9.411827e-01	ci right 9.449076e-01	k: 56584	n:60000
KS ci ratio: 1.084781e-01	ci left: 2.014336e-02	ci right 2.246993e-02	k: 1277	n:60000
ANKS1B   60000 perm   17 sec   (3452 perm/sec)   p_kst 2.128333e-02   p_cons 9.430667e-01   p_joint 4.273333e-02

Joint ci ratio: 7.047347e-02	ci left: 4.083488e-02	ci right 4.383178e-02	k: 2962	n:70000
Cons ci ratio: 3.627983e-03	ci left: 9.417061e-01	ci right 9.451428e-01	k: 66041	n:70000
KS ci ratio: 1.006038e-01	ci left: 2.015955e-02	ci right 2.230896e-02	k: 1485	n:70000
ANKS1B   70000 perm   21 sec   (3401 perm/sec)   p_kst 2.121429e-02   p_cons 9.434429e-01   p_joint 4.231429e-02

Joint ci ratio: 5.722106e-02	ci left: 5.382470e-02	ci right 5.700764e-02	k: 4432	n:80000
Cons ci ratio: 3.395386e-03	ci left: 9.417637e-01	ci right 9.449791e-01	k: 75471	n:80000
KS ci ratio: 9.232481e-02	ci left: 2.101910e-02	ci right 2.306576e-02	k: 1762	n:80000
ANKS1B   80000 perm   24 sec   (3354 perm/sec)   p_kst 2.202500e-02   p_cons 9.433875e-01   p_joint 5.540000e-02

Outputting figure to mutsig2_images.part000000000008/ANKS1B.16_4139_80000_0.022025_0.94339_0.0554.png
                gene_name: ANKS1B
               theta_stop: 0.092 
                    nperm: 80000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 3 percent done.
ANKRD30B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
ANKRD30B   10000 perm   2 sec   (4209 perm/sec)   p_kst 2.329000e-01   p_cons 4.920000e-02   p_joint 7.560000e-02

Joint ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
Cons ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
KS ci ratio: 5.061635e-02	ci left: 2.248264e-01	ci right 2.365520e-01	k: 4613	n:20000
ANKRD30B   20000 perm   5 sec   (3860 perm/sec)   p_kst 2.306500e-01   p_cons 4.910000e-02   p_joint 4.245000e-02

Joint ci ratio: 1.052425e-01	ci left: 4.186922e-02	ci right 4.655289e-02	k: 1325	n:30000
Cons ci ratio: 1.011965e-01	ci left: 4.521789e-02	ci right 5.007020e-02	k: 1428	n:30000
KS ci ratio: 4.095908e-02	ci left: 2.290861e-01	ci right 2.386988e-01	k: 7016	n:30000
ANKRD30B   30000 perm   8 sec   (3722 perm/sec)   p_kst 2.338667e-01   p_cons 4.760000e-02   p_joint 4.416667e-02

Joint ci ratio: 8.726303e-02	ci left: 4.592550e-02	ci right 5.014042e-02	k: 1920	n:40000
Cons ci ratio: 8.351690e-02	ci left: 5.001579e-02	ci right 5.439951e-02	k: 2087	n:40000
KS ci ratio: 3.552122e-02	ci left: 2.292369e-01	ci right 2.375519e-01	k: 9335	n:40000
ANKRD30B   40000 perm   11 sec   (3624 perm/sec)   p_kst 2.333750e-01   p_cons 5.217500e-02   p_joint 4.800000e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD30B.15_4323_40000_0.23337_0.052175_0.048.png
                gene_name: ANKRD30B
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 5 percent done.
ANKRD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
Cons ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
KS ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
ANKRD17   10000 perm   3 sec   (3677 perm/sec)   p_kst 7.501000e-01   p_cons 2.011000e-01   p_joint 4.745000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD17.14_7948_10000_0.7501_0.2011_0.4745.png
                gene_name: ANKRD17
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 6 percent done.
ANO2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
ANO2   10000 perm   2 sec   (4515 perm/sec)   p_kst 1.857000e-01   p_cons 2.125000e-01   p_joint 2.197000e-01

Outputting figure to mutsig2_images.part000000000008/ANO2.13_3101_10000_0.1857_0.2125_0.2197.png
                gene_name: ANO2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 8 percent done.
ANO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
KS ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
ANO3   10000 perm   2 sec   (4429 perm/sec)   p_kst 3.580000e-02   p_cons 1.780000e-02   p_joint 1.260000e-02

Joint ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
Cons ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
KS ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
ANO3   20000 perm   5 sec   (4045 perm/sec)   p_kst 3.445000e-02   p_cons 1.785000e-02   p_joint 5.100000e-03

Joint ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
Cons ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
KS ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
ANO3   30000 perm   8 sec   (3893 perm/sec)   p_kst 3.153333e-02   p_cons 1.810000e-02   p_joint 8.400000e-03

Joint ci ratio: 2.496684e-01	ci left: 5.360479e-03	ci right 6.912532e-03	k: 244	n:40000
Cons ci ratio: 1.549399e-01	ci left: 1.452856e-02	ci right 1.699247e-02	k: 629	n:40000
KS ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
ANO3   40000 perm   11 sec   (3783 perm/sec)   p_kst 3.225000e-02   p_cons 1.572500e-02   p_joint 6.100000e-03

Joint ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
Cons ci ratio: 1.388068e-01	ci left: 1.460925e-02	ci right 1.680750e-02	k: 784	n:50000
KS ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
ANO3   50000 perm   13 sec   (3707 perm/sec)   p_kst 3.222000e-02   p_cons 1.568000e-02   p_joint 9.380000e-03

Joint ci ratio: 1.424320e-01	ci left: 1.157808e-02	ci right 1.336954e-02	k: 747	n:60000
Cons ci ratio: 1.252353e-01	ci left: 1.505959e-02	ci right 1.708761e-02	k: 963	n:60000
KS ci ratio: 8.782880e-02	ci left: 3.072025e-02	ci right 3.355857e-02	k: 1927	n:60000
ANO3   60000 perm   17 sec   (3633 perm/sec)   p_kst 3.211667e-02   p_cons 1.605000e-02   p_joint 1.245000e-02

Joint ci ratio: 1.630876e-01	ci left: 7.517827e-03	ci right 8.866275e-03	k: 572	n:70000
Cons ci ratio: 1.156671e-01	ci left: 1.520834e-02	ci right 1.708922e-02	k: 1129	n:70000
KS ci ratio: 7.937172e-02	ci left: 3.233337e-02	ci right 3.501975e-02	k: 2356	n:70000
ANO3   70000 perm   20 sec   (3580 perm/sec)   p_kst 3.365714e-02   p_cons 1.612857e-02   p_joint 8.171429e-03

Joint ci ratio: 1.684329e-01	ci left: 6.158372e-03	ci right 7.302841e-03	k: 537	n:80000
Cons ci ratio: 1.086004e-01	ci left: 1.515402e-02	ci right 1.690633e-02	k: 1281	n:80000
KS ci ratio: 7.452820e-02	ci left: 3.217788e-02	ci right 3.468110e-02	k: 2673	n:80000
ANO3   80000 perm   23 sec   (3530 perm/sec)   p_kst 3.341250e-02   p_cons 1.601250e-02   p_joint 6.712500e-03

Joint ci ratio: 1.629514e-01	ci left: 5.868101e-03	ci right 6.919651e-03	k: 574	n:90000
Cons ci ratio: 1.024708e-01	ci left: 1.517949e-02	ci right 1.682970e-02	k: 1439	n:90000
KS ci ratio: 7.018448e-02	ci left: 3.232300e-02	ci right 3.468497e-02	k: 3014	n:90000
ANO3   90000 perm   26 sec   (3480 perm/sec)   p_kst 3.348889e-02   p_cons 1.598889e-02   p_joint 6.377778e-03

Joint ci ratio: 1.513895e-01	ci left: 6.155607e-03	ci right 7.173324e-03	k: 665	n:100000
Cons ci ratio: 9.696630e-02	ci left: 1.529970e-02	ci right 1.686855e-02	k: 1607	n:100000
KS ci ratio: 6.645982e-02	ci left: 3.250153e-02	ci right 3.474563e-02	k: 3361	n:100000
ANO3   100000 perm   29 sec   (3431 perm/sec)   p_kst 3.361000e-02   p_cons 1.607000e-02   p_joint 6.650000e-03

Joint ci ratio: 1.423623e-01	ci left: 6.357917e-03	ci right 7.341082e-03	k: 752	n:110000
Cons ci ratio: 9.252824e-02	ci left: 1.531116e-02	ci right 1.680543e-02	k: 1765	n:110000
KS ci ratio: 6.321854e-02	ci left: 3.270402e-02	ci right 3.484793e-02	k: 3714	n:110000
ANO3   110000 perm   32 sec   (3385 perm/sec)   p_kst 3.376364e-02   p_cons 1.604545e-02   p_joint 6.836364e-03

Joint ci ratio: 1.393625e-01	ci left: 6.093340e-03	ci right 7.014084e-03	k: 785	n:120000
Cons ci ratio: 8.893089e-02	ci left: 1.522426e-02	ci right 1.664927e-02	k: 1911	n:120000
KS ci ratio: 6.027921e-02	ci left: 3.301457e-02	ci right 3.507469e-02	k: 4084	n:120000
ANO3   120000 perm   36 sec   (3339 perm/sec)   p_kst 3.403333e-02   p_cons 1.592500e-02   p_joint 6.541667e-03

Joint ci ratio: 1.411243e-01	ci left: 5.483473e-03	ci right 6.323412e-03	k: 766	n:130000
Cons ci ratio: 8.555406e-02	ci left: 1.521193e-02	ci right 1.657902e-02	k: 2065	n:130000
KS ci ratio: 5.793079e-02	ci left: 3.303657e-02	ci right 3.501505e-02	k: 4422	n:130000
ANO3   130000 perm   40 sec   (3285 perm/sec)   p_kst 3.401538e-02   p_cons 1.588462e-02   p_joint 5.892308e-03

Joint ci ratio: 1.466372e-01	ci left: 4.706051e-03	ci right 5.457530e-03	k: 710	n:140000
Cons ci ratio: 8.245936e-02	ci left: 1.523023e-02	ci right 1.654707e-02	k: 2223	n:140000
KS ci ratio: 5.564376e-02	ci left: 3.328226e-02	ci right 3.519423e-02	k: 4792	n:140000
ANO3   140000 perm   43 sec   (3240 perm/sec)   p_kst 3.422857e-02   p_cons 1.587857e-02   p_joint 5.071429e-03

Joint ci ratio: 9.608901e-02	ci left: 1.044576e-02	ci right 1.150660e-02	k: 1645	n:150000
Cons ci ratio: 7.932333e-02	ci left: 1.538413e-02	ci right 1.666135e-02	k: 2402	n:150000
KS ci ratio: 5.380777e-02	ci left: 3.325305e-02	ci right 3.509835e-02	k: 5125	n:150000
ANO3   150000 perm   47 sec   (3198 perm/sec)   p_kst 3.416667e-02   p_cons 1.601333e-02   p_joint 1.096667e-02

Outputting figure to mutsig2_images.part000000000008/ANO3.14_3054_150000_0.034167_0.016013_0.010967.png
                gene_name: ANO3
               theta_stop: 0.096 
                    nperm: 150000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.012 

Current progress: 9 percent done.
ANO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
KS ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
ANO5   10000 perm   2 sec   (4308 perm/sec)   p_kst 8.300000e-02   p_cons 3.340000e-02   p_joint 3.480000e-02

Joint ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
Cons ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
KS ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
ANO5   20000 perm   5 sec   (3993 perm/sec)   p_kst 8.210000e-02   p_cons 3.370000e-02   p_joint 4.610000e-02

Joint ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
Cons ci ratio: 1.219389e-01	ci left: 3.126601e-02	ci right 3.535836e-02	k: 998	n:30000
KS ci ratio: 7.422233e-02	ci left: 8.190061e-02	ci right 8.824668e-02	k: 2551	n:30000
ANO5   30000 perm   8 sec   (3862 perm/sec)   p_kst 8.503333e-02   p_cons 3.326667e-02   p_joint 5.480000e-02

Joint ci ratio: 8.735861e-02	ci left: 4.582759e-02	ci right 5.003836e-02	k: 1916	n:40000
Cons ci ratio: 1.110205e-01	ci left: 2.854456e-02	ci right 3.192409e-02	k: 1208	n:40000
KS ci ratio: 6.417220e-02	ci left: 8.258031e-02	ci right 8.808006e-02	k: 3412	n:40000
ANO5   40000 perm   11 sec   (3773 perm/sec)   p_kst 8.530000e-02   p_cons 3.020000e-02   p_joint 4.790000e-02

Joint ci ratio: 9.161748e-02	ci left: 3.369952e-02	ci right 3.695472e-02	k: 1765	n:50000
Cons ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
KS ci ratio: 5.756915e-02	ci left: 8.241178e-02	ci right 8.731654e-02	k: 4242	n:50000
ANO5   50000 perm   14 sec   (3693 perm/sec)   p_kst 8.484000e-02   p_cons 2.996000e-02   p_joint 3.530000e-02

Outputting figure to mutsig2_images.part000000000008/ANO5.14_2830_50000_0.08484_0.02996_0.0353.png
                gene_name: ANO5
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 11 percent done.
AOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
Cons ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
AOX1   10000 perm   2 sec   (4195 perm/sec)   p_kst 7.593000e-01   p_cons 8.733000e-01   p_joint 8.634000e-01

Outputting figure to mutsig2_images.part000000000008/AOX1.14_4157_10000_0.7593_0.8733_0.8634.png
                gene_name: AOX1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 12 percent done.
ANKRD44
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
ANKRD44   10000 perm   2 sec   (4418 perm/sec)   p_kst 9.000000e-03   p_cons 4.100000e-02   p_joint 9.100000e-03

Joint ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
Cons ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
KS ci ratio: 2.853085e-01	ci left: 8.016427e-03	ci right 1.072909e-02	k: 186	n:20000
ANKRD44   20000 perm   5 sec   (4032 perm/sec)   p_kst 9.300000e-03   p_cons 4.140000e-02   p_joint 7.350000e-03

Joint ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
Cons ci ratio: 1.083574e-01	ci left: 3.953067e-02	ci right 4.409193e-02	k: 1253	n:30000
KS ci ratio: 2.335866e-01	ci left: 8.213484e-03	ci right 1.041645e-02	k: 278	n:30000
ANKRD44   30000 perm   8 sec   (3888 perm/sec)   p_kst 9.266667e-03   p_cons 4.176667e-02   p_joint 5.333333e-03

Joint ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
Cons ci ratio: 9.416439e-02	ci left: 3.956634e-02	ci right 4.350057e-02	k: 1660	n:40000
KS ci ratio: 2.050937e-01	ci left: 8.121507e-03	ci right 1.000080e-02	k: 361	n:40000
ANKRD44   40000 perm   11 sec   (3793 perm/sec)   p_kst 9.025000e-03   p_cons 4.150000e-02   p_joint 9.275000e-03

Joint ci ratio: 2.041484e-01	ci left: 6.572555e-03	ci right 8.085491e-03	k: 365	n:50000
Cons ci ratio: 8.376666e-02	ci left: 4.019963e-02	ci right 4.373380e-02	k: 2097	n:50000
KS ci ratio: 1.825282e-01	ci left: 8.305354e-03	ci right 9.992373e-03	k: 456	n:50000
ANKRD44   50000 perm   13 sec   (3718 perm/sec)   p_kst 9.120000e-03   p_cons 4.194000e-02   p_joint 7.300000e-03

Joint ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
Cons ci ratio: 7.630390e-02	ci left: 4.052337e-02	ci right 4.375444e-02	k: 2527	n:60000
KS ci ratio: 1.701679e-01	ci left: 8.020312e-03	ci right 9.527780e-03	k: 525	n:60000
ANKRD44   60000 perm   16 sec   (3653 perm/sec)   p_kst 8.750000e-03   p_cons 4.211667e-02   p_joint 9.583333e-03

Joint ci ratio: 1.618112e-01	ci left: 7.641210e-03	ci right 9.000020e-03	k: 581	n:70000
Cons ci ratio: 7.071054e-02	ci left: 4.056804e-02	ci right 4.355578e-02	k: 2943	n:70000
KS ci ratio: 1.586793e-01	ci left: 7.956706e-03	ci right 9.341629e-03	k: 604	n:70000
ANKRD44   70000 perm   19 sec   (3591 perm/sec)   p_kst 8.628571e-03   p_cons 4.204286e-02   p_joint 8.300000e-03

Joint ci ratio: 1.585022e-01	ci left: 6.985843e-03	ci right 8.200276e-03	k: 606	n:80000
Cons ci ratio: 6.597574e-02	ci left: 4.086644e-02	ci right 4.366688e-02	k: 3380	n:80000
KS ci ratio: 1.486947e-01	ci left: 7.971772e-03	ci right 9.264242e-03	k: 688	n:80000
ANKRD44   80000 perm   23 sec   (3533 perm/sec)   p_kst 8.600000e-03   p_cons 4.225000e-02   p_joint 7.575000e-03

Joint ci ratio: 1.258402e-01	ci left: 9.995015e-03	ci right 1.134791e-02	k: 959	n:90000
Cons ci ratio: 6.218229e-02	ci left: 4.097237e-02	ci right 4.361279e-02	k: 3805	n:90000
KS ci ratio: 1.401111e-01	ci left: 8.017794e-03	ci right 9.236416e-03	k: 775	n:90000
ANKRD44   90000 perm   26 sec   (3479 perm/sec)   p_kst 8.611111e-03   p_cons 4.227778e-02   p_joint 1.065556e-02

Joint ci ratio: 1.261738e-01	ci left: 8.956468e-03	ci right 1.017223e-02	k: 955	n:100000
Cons ci ratio: 5.919544e-02	ci left: 4.076506e-02	ci right 4.326159e-02	k: 4200	n:100000
KS ci ratio: 1.333290e-01	ci left: 7.998313e-03	ci right 9.150463e-03	k: 856	n:100000
ANKRD44   100000 perm   29 sec   (3428 perm/sec)   p_kst 8.560000e-03   p_cons 4.200000e-02   p_joint 9.550000e-03

Joint ci ratio: 1.112365e-01	ci left: 1.054227e-02	ci right 1.179279e-02	k: 1227	n:110000
Cons ci ratio: 5.639672e-02	ci left: 4.088494e-02	ci right 4.326656e-02	k: 4627	n:110000
KS ci ratio: 1.268328e-01	ci left: 8.062777e-03	ci right 9.163366e-03	k: 946	n:110000
ANKRD44   110000 perm   33 sec   (3384 perm/sec)   p_kst 8.600000e-03   p_cons 4.206364e-02   p_joint 1.115455e-02

Joint ci ratio: 1.144872e-01	ci left: 9.120787e-03	ci right 1.023643e-02	k: 1160	n:120000
Cons ci ratio: 5.409499e-02	ci left: 4.078974e-02	ci right 4.306580e-02	k: 5030	n:120000
KS ci ratio: 1.166366e-01	ci left: 8.780814e-03	ci right 9.876429e-03	k: 1118	n:120000
ANKRD44   120000 perm   36 sec   (3341 perm/sec)   p_kst 9.316667e-03   p_cons 4.191667e-02   p_joint 9.666667e-03

Joint ci ratio: 1.117010e-01	ci left: 8.860128e-03	ci right 9.915776e-03	k: 1219	n:130000
Cons ci ratio: 5.198898e-02	ci left: 4.080963e-02	ci right 4.299548e-02	k: 5446	n:130000
KS ci ratio: 1.130176e-01	ci left: 8.650744e-03	ci right 9.694403e-03	k: 1191	n:130000
ANKRD44   130000 perm   39 sec   (3299 perm/sec)   p_kst 9.161538e-03   p_cons 4.189231e-02   p_joint 9.376923e-03

Joint ci ratio: 1.090649e-01	ci left: 8.643948e-03	ci right 9.647969e-03	k: 1279	n:140000
Cons ci ratio: 5.008003e-02	ci left: 4.087756e-02	ci right 4.298432e-02	k: 5869	n:140000
KS ci ratio: 1.088078e-01	ci left: 8.685647e-03	ci right 9.691982e-03	k: 1285	n:140000
ANKRD44   140000 perm   43 sec   (3256 perm/sec)   p_kst 9.178571e-03   p_cons 4.192143e-02   p_joint 9.135714e-03

Joint ci ratio: 1.162762e-01	ci left: 7.082541e-03	ci right 7.963323e-03	k: 1127	n:150000
Cons ci ratio: 4.837102e-02	ci left: 4.093112e-02	ci right 4.296663e-02	k: 6291	n:150000
KS ci ratio: 1.083749e-01	ci left: 8.177829e-03	ci right 9.121312e-03	k: 1296	n:150000
ANKRD44   150000 perm   47 sec   (3215 perm/sec)   p_kst 8.640000e-03   p_cons 4.194000e-02   p_joint 7.513333e-03

Joint ci ratio: 1.171965e-01	ci left: 6.536626e-03	ci right 7.356393e-03	k: 1110	n:160000
Cons ci ratio: 4.686591e-02	ci left: 4.091107e-02	ci right 4.288057e-02	k: 6702	n:160000
KS ci ratio: 1.052976e-01	ci left: 8.135095e-03	ci right 9.045346e-03	k: 1373	n:160000
ANKRD44   160000 perm   50 sec   (3178 perm/sec)   p_kst 8.581250e-03   p_cons 4.188750e-02   p_joint 6.937500e-03

Joint ci ratio: 1.172206e-01	ci left: 6.152047e-03	ci right 6.923750e-03	k: 1110	n:170000
Cons ci ratio: 4.553318e-02	ci left: 4.082444e-02	ci right 4.273240e-02	k: 7101	n:170000
KS ci ratio: 1.017633e-01	ci left: 8.212392e-03	ci right 9.098604e-03	k: 1470	n:170000
ANKRD44   170000 perm   54 sec   (3139 perm/sec)   p_kst 8.647059e-03   p_cons 4.177059e-02   p_joint 6.529412e-03

Joint ci ratio: 1.175084e-01	ci left: 5.783239e-03	ci right 6.510582e-03	k: 1105	n:180000
Cons ci ratio: 4.419747e-02	ci left: 4.094602e-02	ci right 4.280210e-02	k: 7536	n:180000
KS ci ratio: 9.900942e-02	ci left: 8.205681e-03	ci right 9.065813e-03	k: 1553	n:180000
ANKRD44   180000 perm   58 sec   (3104 perm/sec)   p_kst 8.627778e-03   p_cons 4.186667e-02   p_joint 6.138889e-03

Joint ci ratio: 1.183374e-01	ci left: 5.402177e-03	ci right 6.086720e-03	k: 1090	n:190000
Cons ci ratio: 4.301788e-02	ci left: 4.097219e-02	ci right 4.277866e-02	k: 7955	n:190000
KS ci ratio: 9.667634e-02	ci left: 8.164006e-03	ci right 8.998460e-03	k: 1629	n:190000
ANKRD44   190000 perm   62 sec   (3069 perm/sec)   p_kst 8.573684e-03   p_cons 4.186842e-02   p_joint 5.736842e-03

Joint ci ratio: 1.150603e-01	ci left: 5.437879e-03	ci right 6.106568e-03	k: 1153	n:200000
Cons ci ratio: 4.182383e-02	ci left: 4.119434e-02	ci right 4.295897e-02	k: 8414	n:200000
KS ci ratio: 9.386466e-02	ci left: 8.239027e-03	ci right 9.055310e-03	k: 1728	n:200000
ANKRD44   200000 perm   66 sec   (3034 perm/sec)   p_kst 8.640000e-03   p_cons 4.207000e-02   p_joint 5.765000e-03

Joint ci ratio: 1.140863e-01	ci left: 5.271415e-03	ci right 5.913776e-03	k: 1173	n:210000
Cons ci ratio: 4.079359e-02	ci left: 4.125920e-02	ci right 4.298204e-02	k: 8844	n:210000
KS ci ratio: 9.169046e-02	ci left: 8.232758e-03	ci right 9.028513e-03	k: 1811	n:210000
ANKRD44   210000 perm   70 sec   (3000 perm/sec)   p_kst 8.623810e-03   p_cons 4.211429e-02   p_joint 5.585714e-03

Joint ci ratio: 1.108713e-01	ci left: 5.336628e-03	ci right 5.967413e-03	k: 1242	n:220000
Cons ci ratio: 3.982696e-02	ci left: 4.133665e-02	ci right 4.302089e-02	k: 9278	n:220000
KS ci ratio: 8.925770e-02	ci left: 8.302816e-03	ci right 9.082939e-03	k: 1911	n:220000
ANKRD44   220000 perm   74 sec   (2967 perm/sec)   p_kst 8.686364e-03   p_cons 4.217273e-02   p_joint 5.645455e-03

Joint ci ratio: 1.091760e-01	ci left: 5.269490e-03	ci right 5.882202e-03	k: 1281	n:230000
Cons ci ratio: 3.899094e-02	ci left: 4.127428e-02	ci right 4.291989e-02	k: 9681	n:230000
KS ci ratio: 8.718384e-02	ci left: 8.333005e-03	ci right 9.096845e-03	k: 2003	n:230000
ANKRD44   230000 perm   78 sec   (2936 perm/sec)   p_kst 8.708696e-03   p_cons 4.209130e-02   p_joint 5.569565e-03

Joint ci ratio: 1.111676e-01	ci left: 4.867538e-03	ci right 5.444512e-03	k: 1236	n:240000
Cons ci ratio: 3.810302e-02	ci left: 4.143215e-02	ci right 4.304560e-02	k: 10136	n:240000
KS ci ratio: 8.528918e-02	ci left: 8.352712e-03	ci right 9.100891e-03	k: 2093	n:240000
ANKRD44   240000 perm   83 sec   (2904 perm/sec)   p_kst 8.720833e-03   p_cons 4.223333e-02   p_joint 5.150000e-03

Joint ci ratio: 9.855739e-02	ci left: 5.977973e-03	ci right 6.601556e-03	k: 1571	n:250000
Cons ci ratio: 3.733942e-02	ci left: 4.143505e-02	ci right 4.301559e-02	k: 10555	n:250000
KS ci ratio: 8.351290e-02	ci left: 8.371009e-03	ci right 9.104449e-03	k: 2183	n:250000
ANKRD44   250000 perm   87 sec   (2874 perm/sec)   p_kst 8.732000e-03   p_cons 4.222000e-02   p_joint 6.284000e-03

Outputting figure to mutsig2_images.part000000000008/ANKRD44.10_2860_250000_0.008732_0.04222_0.006284.png
                gene_name: ANKRD44
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.0087 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0091 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 14 percent done.
ANO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
ANO6   10000 perm   2 sec   (4717 perm/sec)   p_kst 1.440000e-02   p_cons 1.800000e-01   p_joint 2.910000e-02

Joint ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
Cons ci ratio: 5.995459e-02	ci left: 1.707940e-01	ci right 1.814004e-01	k: 3521	n:20000
KS ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
ANO6   20000 perm   5 sec   (4290 perm/sec)   p_kst 1.465000e-02   p_cons 1.760500e-01   p_joint 4.840000e-02

Joint ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
Cons ci ratio: 4.902054e-02	ci left: 1.713755e-01	ci right 1.800208e-01	k: 5270	n:30000
KS ci ratio: 1.813614e-01	ci left: 1.394148e-02	ci right 1.675352e-02	k: 459	n:30000
ANO6   30000 perm   7 sec   (4132 perm/sec)   p_kst 1.530000e-02   p_cons 1.756667e-01   p_joint 2.700000e-02

Joint ci ratio: 1.219634e-01	ci left: 2.363758e-02	ci right 2.673187e-02	k: 1006	n:40000
Cons ci ratio: 4.315129e-02	ci left: 1.673218e-01	ci right 1.747261e-01	k: 6840	n:40000
KS ci ratio: 1.596389e-01	ci left: 1.366349e-02	ci right 1.605769e-02	k: 593	n:40000
ANO6   40000 perm   10 sec   (4039 perm/sec)   p_kst 1.482500e-02   p_cons 1.710000e-01   p_joint 2.515000e-02

Joint ci ratio: 9.381483e-02	ci left: 3.215493e-02	ci right 3.533950e-02	k: 1686	n:50000
Cons ci ratio: 3.843927e-02	ci left: 1.688601e-01	ci right 1.754980e-01	k: 8608	n:50000
KS ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
ANO6   50000 perm   13 sec   (3962 perm/sec)   p_kst 1.528000e-02   p_cons 1.721600e-01   p_joint 3.372000e-02

Joint ci ratio: 9.522617e-02	ci left: 2.615719e-02	ci right 2.878878e-02	k: 1647	n:60000
Cons ci ratio: 3.506922e-02	ci left: 1.693190e-01	ci right 1.753794e-01	k: 10340	n:60000
KS ci ratio: 1.277502e-01	ci left: 1.446215e-02	ci right 1.645178e-02	k: 926	n:60000
ANO6   60000 perm   15 sec   (3889 perm/sec)   p_kst 1.543333e-02   p_cons 1.723333e-01   p_joint 2.745000e-02

Joint ci ratio: 9.405362e-02	ci left: 2.307423e-02	ci right 2.536544e-02	k: 1694	n:70000
Cons ci ratio: 3.248326e-02	ci left: 1.694096e-01	ci right 1.750176e-01	k: 12054	n:70000
KS ci ratio: 1.186925e-01	ci left: 1.443145e-02	ci right 1.626619e-02	k: 1073	n:70000
ANO6   70000 perm   18 sec   (3820 perm/sec)   p_kst 1.532857e-02   p_cons 1.722000e-01   p_joint 2.420000e-02

Joint ci ratio: 9.211134e-02	ci left: 2.111684e-02	ci right 2.316801e-02	k: 1770	n:80000
Cons ci ratio: 3.038951e-02	ci left: 1.695521e-01	ci right 1.747967e-01	k: 13773	n:80000
KS ci ratio: 1.106351e-01	ci left: 1.459455e-02	ci right 1.631585e-02	k: 1235	n:80000
ANO6   80000 perm   21 sec   (3759 perm/sec)   p_kst 1.543750e-02   p_cons 1.721625e-01   p_joint 2.212500e-02

Joint ci ratio: 7.429982e-02	ci left: 2.888422e-02	ci right 3.112399e-02	k: 2699	n:90000
Cons ci ratio: 2.906453e-02	ci left: 1.656841e-01	ci right 1.705817e-01	k: 15131	n:90000
KS ci ratio: 1.070175e-01	ci left: 1.390221e-02	ci right 1.548485e-02	k: 1321	n:90000
ANO6   90000 perm   24 sec   (3700 perm/sec)   p_kst 1.467778e-02   p_cons 1.681222e-01   p_joint 2.998889e-02

Joint ci ratio: 6.971225e-02	ci left: 2.958047e-02	ci right 3.172686e-02	k: 3064	n:100000
Cons ci ratio: 2.758718e-02	ci left: 1.656676e-01	ci right 1.703117e-01	k: 16798	n:100000
KS ci ratio: 1.018389e-01	ci left: 1.385594e-02	ci right 1.535241e-02	k: 1459	n:100000
ANO6   100000 perm   27 sec   (3639 perm/sec)   p_kst 1.459000e-02   p_cons 1.679800e-01   p_joint 3.064000e-02

Joint ci ratio: 6.578180e-02	ci left: 3.024303e-02	ci right 3.230905e-02	k: 3439	n:110000
Cons ci ratio: 2.631097e-02	ci left: 1.656954e-01	ci right 1.701221e-01	k: 18469	n:110000
KS ci ratio: 9.655202e-02	ci left: 1.405031e-02	ci right 1.548453e-02	k: 1623	n:110000
ANO6   110000 perm   31 sec   (3582 perm/sec)   p_kst 1.475455e-02   p_cons 1.679000e-01   p_joint 3.126364e-02

Outputting figure to mutsig2_images.part000000000008/ANO6.12_3101_110000_0.014755_0.1679_0.031264.png
                gene_name: ANO6
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 15 percent done.
ANKRD56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
ANKRD56   10000 perm   2 sec   (4564 perm/sec)   p_kst 2.750000e-02   p_cons 1.363000e-01   p_joint 4.670000e-02

Joint ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
Cons ci ratio: 7.025272e-02	ci left: 1.299476e-01	ci right 1.394589e-01	k: 2693	n:20000
KS ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
ANKRD56   20000 perm   5 sec   (4160 perm/sec)   p_kst 2.820000e-02   p_cons 1.346500e-01   p_joint 1.880000e-02

Joint ci ratio: 2.263290e-01	ci left: 8.779206e-03	ci right 1.105055e-02	k: 296	n:30000
Cons ci ratio: 5.731227e-02	ci left: 1.310202e-01	ci right 1.387840e-01	k: 4046	n:30000
KS ci ratio: 1.319761e-01	ci left: 2.667845e-02	ci right 3.048025e-02	k: 856	n:30000
ANKRD56   30000 perm   7 sec   (4015 perm/sec)   p_kst 2.853333e-02   p_cons 1.348667e-01   p_joint 9.866667e-03

Joint ci ratio: 1.162831e-01	ci left: 2.601642e-02	ci right 2.925264e-02	k: 1104	n:40000
Cons ci ratio: 4.901629e-02	ci left: 1.344607e-01	ci right 1.412419e-01	k: 5513	n:40000
KS ci ratio: 1.144326e-01	ci left: 2.686684e-02	ci right 3.015209e-02	k: 1139	n:40000
ANKRD56   40000 perm   10 sec   (3907 perm/sec)   p_kst 2.847500e-02   p_cons 1.378250e-01   p_joint 2.760000e-02

Joint ci ratio: 9.907210e-02	ci left: 2.885389e-02	ci right 3.188096e-02	k: 1517	n:50000
Cons ci ratio: 4.387296e-02	ci left: 1.346511e-01	ci right 1.407110e-01	k: 6883	n:50000
KS ci ratio: 1.030236e-01	ci left: 2.668842e-02	ci right 2.960671e-02	k: 1406	n:50000
ANKRD56   50000 perm   13 sec   (3817 perm/sec)   p_kst 2.812000e-02   p_cons 1.376600e-01   p_joint 3.034000e-02

Joint ci ratio: 1.006651e-01	ci left: 2.340776e-02	ci right 2.590518e-02	k: 1478	n:60000
Cons ci ratio: 4.018532e-02	ci left: 1.341258e-01	ci right 1.396427e-01	k: 8212	n:60000
KS ci ratio: 9.385882e-02	ci left: 2.692249e-02	ci right 2.959006e-02	k: 1694	n:60000
ANKRD56   60000 perm   16 sec   (3746 perm/sec)   p_kst 2.823333e-02   p_cons 1.368667e-01   p_joint 2.463333e-02

Joint ci ratio: 9.727807e-02	ci left: 2.156746e-02	ci right 2.378664e-02	k: 1586	n:70000
Cons ci ratio: 3.724908e-02	ci left: 1.340497e-01	ci right 1.391519e-01	k: 9561	n:70000
KS ci ratio: 8.654805e-02	ci left: 2.723782e-02	ci right 2.971576e-02	k: 1992	n:70000
ANKRD56   70000 perm   19 sec   (3678 perm/sec)   p_kst 2.845714e-02   p_cons 1.365857e-01   p_joint 2.265714e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD56.11_2386_70000_0.028457_0.13659_0.022657.png
                gene_name: ANKRD56
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 17 percent done.
AOAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
Cons ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
KS ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
AOAH   10000 perm   2 sec   (5041 perm/sec)   p_kst 2.620000e-02   p_cons 1.540000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
Cons ci ratio: 6.229770e-02	ci left: 1.600772e-01	ci right 1.704203e-01	k: 3304	n:20000
KS ci ratio: 1.725682e-01	ci left: 2.297630e-02	ci right 2.736323e-02	k: 502	n:20000
AOAH   20000 perm   4 sec   (4445 perm/sec)   p_kst 2.510000e-02   p_cons 1.652000e-01   p_joint 3.090000e-02

Joint ci ratio: 1.167214e-01	ci left: 3.411469e-02	ci right 3.837573e-02	k: 1086	n:30000
Cons ci ratio: 5.223890e-02	ci left: 1.538892e-01	ci right 1.621771e-01	k: 4740	n:30000
KS ci ratio: 1.393472e-01	ci left: 2.390657e-02	ci right 2.751941e-02	k: 770	n:30000
AOAH   30000 perm   7 sec   (4304 perm/sec)   p_kst 2.566667e-02   p_cons 1.580000e-01   p_joint 3.620000e-02

Joint ci ratio: 1.034527e-01	ci left: 3.285467e-02	ci right 3.646330e-02	k: 1385	n:40000
Cons ci ratio: 4.706837e-02	ci left: 1.442857e-01	ci right 1.512655e-01	k: 5910	n:40000
KS ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
AOAH   40000 perm   10 sec   (4193 perm/sec)   p_kst 2.585000e-02   p_cons 1.477500e-01   p_joint 3.462500e-02

Joint ci ratio: 8.928513e-02	ci left: 3.546023e-02	ci right 3.879378e-02	k: 1855	n:50000
Cons ci ratio: 4.217887e-02	ci left: 1.441843e-01	ci right 1.504167e-01	k: 7364	n:50000
KS ci ratio: 1.056811e-01	ci left: 2.536298e-02	ci right 2.821232e-02	k: 1338	n:50000
AOAH   50000 perm   12 sec   (4110 perm/sec)   p_kst 2.676000e-02   p_cons 1.472800e-01   p_joint 3.710000e-02

Joint ci ratio: 8.885779e-02	ci left: 3.001893e-02	ci right 3.282663e-02	k: 1884	n:60000
Cons ci ratio: 3.844526e-02	ci left: 1.448367e-01	ci right 1.505307e-01	k: 8860	n:60000
KS ci ratio: 9.597733e-02	ci left: 2.575022e-02	ci right 2.836246e-02	k: 1622	n:60000
AOAH   60000 perm   15 sec   (4038 perm/sec)   p_kst 2.703333e-02   p_cons 1.476667e-01   p_joint 3.140000e-02

Outputting figure to mutsig2_images.part000000000008/AOAH.11_2153_60000_0.027033_0.14767_0.0314.png
                gene_name: AOAH
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 18 percent done.
ANKRD26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
Cons ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
KS ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
ANKRD26   10000 perm   2 sec   (4194 perm/sec)   p_kst 3.467000e-01   p_cons 1.010000e-02   p_joint 3.530000e-02

Joint ci ratio: 2.056035e-01	ci left: 1.601286e-02	ci right 1.972920e-02	k: 356	n:20000
Cons ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
KS ci ratio: 3.781568e-02	ci left: 3.428393e-01	ci right 3.561045e-01	k: 6989	n:20000
ANKRD26   20000 perm   5 sec   (3865 perm/sec)   p_kst 3.494500e-01   p_cons 9.700000e-03   p_joint 1.780000e-02

Joint ci ratio: 9.129107e-02	ci left: 5.525076e-02	ci right 6.056859e-02	k: 1736	n:30000
Cons ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
KS ci ratio: 3.102860e-02	ci left: 3.418443e-01	ci right 3.526520e-01	k: 10417	n:30000
ANKRD26   30000 perm   8 sec   (3724 perm/sec)   p_kst 3.472333e-01   p_cons 1.063333e-02   p_joint 5.786667e-02

Joint ci ratio: 8.813400e-02	ci left: 4.504432e-02	ci right 4.922174e-02	k: 1884	n:40000
Cons ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
KS ci ratio: 2.665319e-02	ci left: 3.462713e-01	ci right 3.556503e-01	k: 14038	n:40000
ANKRD26   40000 perm   11 sec   (3641 perm/sec)   p_kst 3.509500e-01   p_cons 1.067500e-02   p_joint 4.710000e-02

Joint ci ratio: 1.123220e-01	ci left: 2.244275e-02	ci right 2.513293e-02	k: 1188	n:50000
Cons ci ratio: 1.739011e-01	ci left: 9.184683e-03	ci right 1.095289e-02	k: 502	n:50000
KS ci ratio: 2.399370e-02	ci left: 3.438437e-01	ci right 3.522140e-01	k: 17401	n:50000
ANKRD26   50000 perm   14 sec   (3562 perm/sec)   p_kst 3.480200e-01   p_cons 1.004000e-02   p_joint 2.376000e-02

Joint ci ratio: 7.202154e-02	ci left: 4.535294e-02	ci right 4.875771e-02	k: 2822	n:60000
Cons ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
KS ci ratio: 2.204498e-02	ci left: 3.412953e-01	ci right 3.489197e-01	k: 20706	n:60000
ANKRD26   60000 perm   17 sec   (3494 perm/sec)   p_kst 3.451000e-01   p_cons 1.203333e-02   p_joint 4.703333e-02

Joint ci ratio: 6.476720e-02	ci left: 4.811568e-02	ci right 5.135034e-02	k: 3480	n:70000
Cons ci ratio: 1.402110e-01	ci left: 1.026809e-02	ci right 1.182998e-02	k: 772	n:70000
KS ci ratio: 2.027952e-02	ci left: 3.444705e-01	ci right 3.515421e-01	k: 24360	n:70000
ANKRD26   70000 perm   20 sec   (3435 perm/sec)   p_kst 3.480000e-01   p_cons 1.102857e-02   p_joint 4.971429e-02

Joint ci ratio: 6.421110e-02	ci left: 4.308140e-02	ci right 4.595175e-02	k: 3560	n:80000
Cons ci ratio: 1.326382e-01	ci left: 1.008321e-02	ci right 1.152760e-02	k: 863	n:80000
KS ci ratio: 1.899389e-02	ci left: 3.441248e-01	ci right 3.507362e-01	k: 27794	n:80000
ANKRD26   80000 perm   24 sec   (3380 perm/sec)   p_kst 3.474250e-01   p_cons 1.078750e-02   p_joint 4.450000e-02

Joint ci ratio: 6.748652e-02	ci left: 3.491258e-02	ci right 3.736188e-02	k: 3251	n:90000
Cons ci ratio: 1.249227e-01	ci left: 1.014574e-02	ci right 1.150829e-02	k: 973	n:90000
KS ci ratio: 1.791743e-02	ci left: 3.440669e-01	ci right 3.502985e-01	k: 31246	n:90000
ANKRD26   90000 perm   27 sec   (3329 perm/sec)   p_kst 3.471778e-01   p_cons 1.081111e-02   p_joint 3.612222e-02

Joint ci ratio: 6.152555e-02	ci left: 3.780849e-02	ci right 4.021834e-02	k: 3900	n:100000
Cons ci ratio: 1.198186e-01	ci left: 9.955092e-03	ci right 1.123353e-02	k: 1058	n:100000
KS ci ratio: 1.698182e-02	ci left: 3.446579e-01	ci right 3.505709e-01	k: 34761	n:100000
ANKRD26   100000 perm   30 sec   (3281 perm/sec)   p_kst 3.476100e-01   p_cons 1.058000e-02   p_joint 3.900000e-02

Joint ci ratio: 6.284310e-02	ci left: 3.308897e-02	ci right 3.524477e-02	k: 3757	n:110000
Cons ci ratio: 1.135987e-01	ci left: 1.010038e-02	ci right 1.132563e-02	k: 1177	n:110000
KS ci ratio: 1.617117e-02	ci left: 3.453660e-01	ci right 3.510056e-01	k: 38300	n:110000
ANKRD26   110000 perm   34 sec   (3236 perm/sec)   p_kst 3.481818e-01   p_cons 1.070000e-02   p_joint 3.415455e-02

Joint ci ratio: 5.831964e-02	ci left: 3.522417e-02	ci right 3.734832e-02	k: 4353	n:120000
Cons ci ratio: 1.039654e-01	ci left: 1.109925e-02	ci right 1.232452e-02	k: 1404	n:120000
KS ci ratio: 1.549776e-02	ci left: 3.450466e-01	ci right 3.504441e-01	k: 41729	n:120000
ANKRD26   120000 perm   38 sec   (3196 perm/sec)   p_kst 3.477417e-01   p_cons 1.170000e-02   p_joint 3.627500e-02

Joint ci ratio: 5.443406e-02	ci left: 3.731634e-02	ci right 3.941201e-02	k: 4986	n:130000
Cons ci ratio: 9.929705e-02	ci left: 1.125758e-02	ci right 1.244127e-02	k: 1539	n:130000
KS ci ratio: 1.431382e-02	ci left: 3.632270e-01	ci right 3.684713e-01	k: 47560	n:130000
ANKRD26   130000 perm   41 sec   (3158 perm/sec)   p_kst 3.658462e-01   p_cons 1.183846e-02   p_joint 3.835385e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD26.10_5269_130000_0.36585_0.011838_0.038354.png
                gene_name: ANKRD26
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 20 percent done.
ANO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 1.181361e-02	ci left: 9.112147e-01	ci right 9.221412e-01	k: 9168	n:10000
ANO4   10000 perm   2 sec   (5037 perm/sec)   p_kst 9.168000e-01   p_cons 3.308000e-01   p_joint 7.832000e-01

Outputting figure to mutsig2_images.part000000000008/ANO4.10_2863_10000_0.9168_0.3308_0.7832.png
                gene_name: ANO4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 22 percent done.
ANKRD55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
Cons ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
KS ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
ANKRD55   10000 perm   2 sec   (5420 perm/sec)   p_kst 5.833000e-01   p_cons 7.480000e-01   p_joint 6.640000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD55.9_1889_10000_0.5833_0.748_0.664.png
                gene_name: ANKRD55
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 23 percent done.
ANO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
ANO7   10000 perm   2 sec   (4762 perm/sec)   p_kst 5.040000e-02   p_cons 3.414000e-01   p_joint 8.460000e-02

Joint ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
Cons ci ratio: 3.896598e-02	ci left: 3.294033e-01	ci right 3.425444e-01	k: 6719	n:20000
KS ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
ANO7   20000 perm   5 sec   (4320 perm/sec)   p_kst 5.165000e-02   p_cons 3.359500e-01   p_joint 8.715000e-02

Joint ci ratio: 7.203795e-02	ci left: 8.658802e-02	ci right 9.309167e-02	k: 2694	n:30000
Cons ci ratio: 3.168059e-02	ci left: 3.325137e-01	ci right 3.432510e-01	k: 10136	n:30000
KS ci ratio: 9.601689e-02	ci left: 5.010068e-02	ci right 5.518640e-02	k: 1578	n:30000
ANO7   30000 perm   7 sec   (4157 perm/sec)   p_kst 5.260000e-02   p_cons 3.378667e-01   p_joint 8.980000e-02

Outputting figure to mutsig2_images.part000000000008/ANO7.9_2974_30000_0.0526_0.33787_0.0898.png
                gene_name: ANO7
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 25 percent done.
ANP32C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
ANP32C   10000 perm   2 sec   (5220 perm/sec)   p_kst 2.111000e-01   p_cons 4.965000e-01   p_joint 3.548000e-01

Outputting figure to mutsig2_images.part000000000008/ANP32C.9_708_10000_0.2111_0.4965_0.3548.png
                gene_name: ANP32C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 26 percent done.
ANLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
Cons ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
ANLN   10000 perm   2 sec   (4689 perm/sec)   p_kst 9.170000e-02   p_cons 3.418000e-01   p_joint 1.472000e-01

Joint ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
Cons ci ratio: 3.796167e-02	ci left: 3.410973e-01	ci right 3.543470e-01	k: 6954	n:20000
KS ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
ANLN   20000 perm   5 sec   (4255 perm/sec)   p_kst 8.895000e-02   p_cons 3.477000e-01   p_joint 1.213500e-01

Outputting figure to mutsig2_images.part000000000008/ANLN.8_3471_20000_0.08895_0.3477_0.12135.png
                gene_name: ANLN
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 28 percent done.
ANTXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
ANTXR1   10000 perm   2 sec   (5087 perm/sec)   p_kst 2.628000e-01   p_cons 2.949000e-01   p_joint 2.782000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR1.8_1844_10000_0.2628_0.2949_0.2782.png
                gene_name: ANTXR1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
ANKRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
Cons ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
KS ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
ANKRD5   10000 perm   2 sec   (4816 perm/sec)   p_kst 3.137000e-01   p_cons 7.110000e-01   p_joint 4.818000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD5.7_2367_10000_0.3137_0.711_0.4818.png
                gene_name: ANKRD5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 31 percent done.
ANKRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
Cons ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
KS ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
ANKRD7   10000 perm   2 sec   (5431 perm/sec)   p_kst 4.160000e-02   p_cons 6.494000e-01   p_joint 9.460000e-02

Joint ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
Cons ci ratio: 2.022295e-02	ci left: 6.459543e-01	ci right 6.592013e-01	k: 13052	n:20000
KS ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
ANKRD7   20000 perm   4 sec   (4897 perm/sec)   p_kst 3.890000e-02   p_cons 6.526000e-01   p_joint 1.024500e-01

Joint ci ratio: 7.249699e-02	ci left: 8.557163e-02	ci right 9.204160e-02	k: 2663	n:30000
Cons ci ratio: 1.655835e-02	ci left: 6.459097e-01	ci right 6.567277e-01	k: 19540	n:30000
KS ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
ANKRD7   30000 perm   6 sec   (4683 perm/sec)   p_kst 3.976667e-02   p_cons 6.513333e-01   p_joint 8.876667e-02

Joint ci ratio: 6.400831e-02	ci left: 8.297447e-02	ci right 8.848584e-02	k: 3428	n:40000
Cons ci ratio: 1.438612e-02	ci left: 6.451772e-01	ci right 6.545511e-01	k: 25995	n:40000
KS ci ratio: 9.583188e-02	ci left: 3.822271e-02	ci right 4.209441e-02	k: 1605	n:40000
ANKRD7   40000 perm   9 sec   (4543 perm/sec)   p_kst 4.012500e-02   p_cons 6.498750e-01   p_joint 8.570000e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD7.7_789_40000_0.040125_0.64987_0.0857.png
                gene_name: ANKRD7
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 32 percent done.
ANKRD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
ANKRD12   10000 perm   2 sec   (4550 perm/sec)   p_kst 9.719000e-01   p_cons 1.590000e-01   p_joint 6.631000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD12.6_6237_10000_0.9719_0.159_0.6631.png
                gene_name: ANKRD12
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 34 percent done.
ANKRD34A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 1.125544e-02	ci left: 9.185285e-01	ci right 9.290230e-01	k: 9239	n:10000
ANKRD34A   10000 perm   2 sec   (5697 perm/sec)   p_kst 9.239000e-01   p_cons 1.438000e-01   p_joint 5.665000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD34A.6_1495_10000_0.9239_0.1438_0.5665.png
                gene_name: ANKRD34A
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
ANKRD35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
Cons ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
KS ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
ANKRD35   10000 perm   2 sec   (5144 perm/sec)   p_kst 2.297000e-01   p_cons 9.692000e-01   p_joint 3.238000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD35.6_3058_10000_0.2297_0.9692_0.3238.png
                gene_name: ANKRD35
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 37 percent done.
ANKRD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
KS ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
ANKRD11   10000 perm   3 sec   (3910 perm/sec)   p_kst 7.623000e-01   p_cons 8.170000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD11.5_8036_10000_0.7623_0.817_1.png
                gene_name: ANKRD11
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
ANKRD34B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
Cons ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
KS ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
ANKRD34B   10000 perm   2 sec   (5711 perm/sec)   p_kst 2.299000e-01   p_cons 6.492000e-01   p_joint 4.579000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD34B.5_1549_10000_0.2299_0.6492_0.4579.png
                gene_name: ANKRD34B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 40 percent done.
ANO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
Cons ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
KS ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
ANO10   10000 perm   2 sec   (5508 perm/sec)   p_kst 5.721000e-01   p_cons 7.769000e-01   p_joint 8.288000e-01

Outputting figure to mutsig2_images.part000000000008/ANO10.5_2031_10000_0.5721_0.7769_0.8288.png
                gene_name: ANO10
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 42 percent done.
ANXA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
ANXA7   10000 perm   2 sec   (5527 perm/sec)   p_kst 4.307000e-01   p_cons 1.030000e-02   p_joint 2.490000e-02

Joint ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
Cons ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
KS ci ratio: 3.151991e-02	ci left: 4.291621e-01	ci right 4.429565e-01	k: 8721	n:20000
ANXA7   20000 perm   4 sec   (4984 perm/sec)   p_kst 4.360500e-01   p_cons 1.020000e-02   p_joint 6.720000e-02

Joint ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
Cons ci ratio: 2.248050e-01	ci left: 8.905068e-03	ci right 1.119132e-02	k: 300	n:30000
KS ci ratio: 2.559153e-02	ci left: 4.332074e-01	ci right 4.444711e-01	k: 13165	n:30000
ANXA7   30000 perm   6 sec   (4783 perm/sec)   p_kst 4.388333e-01   p_cons 1.000000e-02   p_joint 4.186667e-02

Joint ci ratio: 1.039980e-01	ci left: 3.251345e-02	ci right 3.610457e-02	k: 1371	n:40000
Cons ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
KS ci ratio: 2.215574e-02	ci left: 4.341288e-01	ci right 4.438801e-01	k: 17560	n:40000
ANXA7   40000 perm   9 sec   (4645 perm/sec)   p_kst 4.390000e-01   p_cons 9.975000e-03   p_joint 3.427500e-02

Joint ci ratio: 9.510600e-02	ci left: 3.129505e-02	ci right 3.443949e-02	k: 1642	n:50000
Cons ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
KS ci ratio: 1.994208e-02	ci left: 4.315474e-01	ci right 4.402601e-01	k: 21795	n:50000
ANXA7   50000 perm   11 sec   (4523 perm/sec)   p_kst 4.359000e-01   p_cons 1.020000e-02   p_joint 3.284000e-02

Joint ci ratio: 7.200816e-02	ci left: 4.536932e-02	ci right 4.877466e-02	k: 2823	n:60000
Cons ci ratio: 1.584316e-01	ci left: 9.299348e-03	ci right 1.091523e-02	k: 605	n:60000
KS ci ratio: 1.820033e-02	ci left: 4.320436e-01	ci right 4.399959e-01	k: 26161	n:60000
ANXA7   60000 perm   14 sec   (4419 perm/sec)   p_kst 4.360167e-01   p_cons 1.008333e-02   p_joint 4.705000e-02

Joint ci ratio: 7.069800e-02	ci left: 4.058208e-02	ci right 4.357031e-02	k: 2944	n:70000
Cons ci ratio: 1.432396e-01	ci left: 9.826995e-03	ci right 1.135684e-02	k: 740	n:70000
KS ci ratio: 1.687831e-02	ci left: 4.315229e-01	ci right 4.388825e-01	k: 30464	n:70000
ANXA7   70000 perm   16 sec   (4322 perm/sec)   p_kst 4.352000e-01   p_cons 1.057143e-02   p_joint 4.205714e-02

Joint ci ratio: 5.580879e-02	ci left: 5.646409e-02	ci right 5.971805e-02	k: 4646	n:80000
Cons ci ratio: 1.274456e-01	ci left: 1.094214e-02	ci right 1.244358e-02	k: 934	n:80000
KS ci ratio: 1.577743e-02	ci left: 4.320978e-01	ci right 4.389819e-01	k: 34843	n:80000
ANXA7   80000 perm   19 sec   (4233 perm/sec)   p_kst 4.355375e-01   p_cons 1.167500e-02   p_joint 5.807500e-02

Joint ci ratio: 5.459550e-02	ci left: 5.269673e-02	ci right 5.566542e-02	k: 4875	n:90000
Cons ci ratio: 1.194622e-01	ci left: 1.111551e-02	ci right 1.253844e-02	k: 1063	n:90000
KS ci ratio: 1.488367e-02	ci left: 4.320130e-01	ci right 4.385023e-01	k: 39173	n:90000
ANXA7   90000 perm   22 sec   (4151 perm/sec)   p_kst 4.352556e-01   p_cons 1.181111e-02   p_joint 5.416667e-02

Joint ci ratio: 4.817857e-02	ci left: 6.059215e-02	ci right 6.359331e-02	k: 6208	n:100000
Cons ci ratio: 1.145751e-01	ci left: 1.090667e-02	ci right 1.224188e-02	k: 1156	n:100000
KS ci ratio: 1.415633e-02	ci left: 4.309151e-01	ci right 4.370687e-01	k: 43399	n:100000
ANXA7   100000 perm   25 sec   (4067 perm/sec)   p_kst 4.339900e-01   p_cons 1.156000e-02   p_joint 6.208000e-02

Joint ci ratio: 5.101779e-02	ci left: 4.963538e-02	ci right 5.224291e-02	k: 5602	n:110000
Cons ci ratio: 1.096667e-01	ci left: 1.085176e-02	ci right 1.211965e-02	k: 1262	n:110000
KS ci ratio: 1.350402e-02	ci left: 4.308231e-01	ci right 4.366895e-01	k: 47713	n:110000
ANXA7   110000 perm   28 sec   (3988 perm/sec)   p_kst 4.337545e-01   p_cons 1.147273e-02   p_joint 5.092727e-02

Joint ci ratio: 4.871315e-02	ci left: 4.995142e-02	ci right 5.245366e-02	k: 6143	n:120000
Cons ci ratio: 1.051067e-01	ci left: 1.085571e-02	ci right 1.206807e-02	k: 1374	n:120000
KS ci ratio: 1.292245e-02	ci left: 4.312016e-01	ci right 4.368183e-01	k: 52081	n:120000
ANXA7   120000 perm   31 sec   (3917 perm/sec)   p_kst 4.340083e-01   p_cons 1.145000e-02   p_joint 5.119167e-02

Joint ci ratio: 5.685502e-02	ci left: 3.427305e-02	ci right 3.628621e-02	k: 4585	n:130000
Cons ci ratio: 1.011408e-01	ci left: 1.084499e-02	ci right 1.200773e-02	k: 1484	n:130000
KS ci ratio: 1.222913e-02	ci left: 4.387520e-01	ci right 4.441583e-01	k: 57389	n:130000
ANXA7   130000 perm   34 sec   (3856 perm/sec)   p_kst 4.414538e-01   p_cons 1.141538e-02   p_joint 3.526923e-02

Joint ci ratio: 5.531006e-02	ci left: 3.367691e-02	ci right 3.559957e-02	k: 4848	n:140000
Cons ci ratio: 9.771643e-02	ci left: 1.080865e-02	ci right 1.192601e-02	k: 1590	n:140000
KS ci ratio: 1.179156e-02	ci left: 4.385468e-01	ci right 4.437557e-01	k: 61761	n:140000
ANXA7   140000 perm   37 sec   (3792 perm/sec)   p_kst 4.411500e-01   p_cons 1.135714e-02   p_joint 3.462857e-02

Outputting figure to mutsig2_images.part000000000008/ANXA7.5_1519_140000_0.44115_0.011357_0.034629.png
                gene_name: ANXA7
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 43 percent done.
AOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
Cons ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
KS ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
AOC3   10000 perm   2 sec   (5455 perm/sec)   p_kst 4.135000e-01   p_cons 9.803000e-01   p_joint 6.636000e-01

Outputting figure to mutsig2_images.part000000000008/AOC3.5_2308_10000_0.4135_0.9803_0.6636.png
                gene_name: AOC3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 45 percent done.
ANKRD20A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
KS ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
ANKRD20A4   10000 perm   2 sec   (5406 perm/sec)   p_kst 8.200000e-02   p_cons 8.140000e-01   p_joint 2.280000e-01

Joint ci ratio: 5.345536e-02	ci left: 2.062041e-01	ci right 2.175798e-01	k: 4237	n:20000
Cons ci ratio: 1.322192e-02	ci left: 8.091940e-01	ci right 8.200143e-01	k: 16293	n:20000
KS ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
ANKRD20A4   20000 perm   4 sec   (4851 perm/sec)   p_kst 8.545000e-02   p_cons 8.146500e-01   p_joint 2.118500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD20A4.4_2532_20000_0.08545_0.81465_0.21185.png
                gene_name: ANKRD20A4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
ANKRD24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
Cons ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
ANKRD24   10000 perm   2 sec   (5369 perm/sec)   p_kst 8.703000e-01   p_cons 2.555000e-01   p_joint 7.770000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD24.4_3525_10000_0.8703_0.2555_0.777.png
                gene_name: ANKRD24
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 48 percent done.
ANKRD27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
ANKRD27   10000 perm   2 sec   (5307 perm/sec)   p_kst 3.585000e-01   p_cons 5.906000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD27.4_3265_10000_0.3585_0.5906_0.5342.png
                gene_name: ANKRD27
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
ANKRD45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
Cons ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
KS ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
ANKRD45   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.257000e-01   p_cons 7.618000e-01   p_joint 8.710000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD45.4_821_10000_0.6257_0.7618_0.871.png
                gene_name: ANKRD45
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 51 percent done.
ANKRD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
Cons ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
KS ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
ANKRD50   10000 perm   2 sec   (5085 perm/sec)   p_kst 3.161000e-01   p_cons 4.832000e-01   p_joint 4.221000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD50.4_4302_10000_0.3161_0.4832_0.4221.png
                gene_name: ANKRD50
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 52 percent done.
ANKS4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
KS ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
ANKS4B   10000 perm   2 sec   (5954 perm/sec)   p_kst 8.958000e-01   p_cons 8.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKS4B.4_1262_10000_0.8958_0.8962_1.png
                gene_name: ANKS4B
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
ANKZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
ANKZF1   10000 perm   2 sec   (5510 perm/sec)   p_kst 5.620000e-02   p_cons 5.055000e-01   p_joint 1.630000e-01

Joint ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
Cons ci ratio: 2.774146e-02	ci left: 4.925960e-01	ci right 5.065042e-01	k: 9991	n:20000
KS ci ratio: 1.148384e-01	ci left: 5.188028e-02	ci right 5.824985e-02	k: 1100	n:20000
ANKZF1   20000 perm   4 sec   (4946 perm/sec)   p_kst 5.500000e-02   p_cons 4.995500e-01   p_joint 1.343500e-01

Joint ci ratio: 5.891266e-02	ci left: 1.247985e-01	ci right 1.324070e-01	k: 3857	n:30000
Cons ci ratio: 2.214146e-02	ci left: 5.052593e-01	ci right 5.166053e-01	k: 15328	n:30000
KS ci ratio: 9.472568e-02	ci left: 5.143645e-02	ci right 5.658368e-02	k: 1619	n:30000
ANKZF1   30000 perm   6 sec   (4710 perm/sec)   p_kst 5.396667e-02   p_cons 5.109333e-01   p_joint 1.285667e-01

Outputting figure to mutsig2_images.part000000000008/ANKZF1.4_2233_30000_0.053967_0.51093_0.12857.png
                gene_name: ANKZF1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
ANPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
ANPEP   10000 perm   2 sec   (5479 perm/sec)   p_kst 2.920000e-02   p_cons 3.808000e-01   p_joint 4.300000e-02

Joint ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
Cons ci ratio: 3.697026e-02	ci left: 3.531442e-01	ci right 3.664965e-01	k: 7196	n:20000
KS ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
ANPEP   20000 perm   4 sec   (4893 perm/sec)   p_kst 2.990000e-02   p_cons 3.598000e-01   p_joint 6.910000e-02

Joint ci ratio: 6.267027e-02	ci left: 1.117395e-01	ci right 1.190019e-01	k: 3460	n:30000
Cons ci ratio: 2.845608e-02	ci left: 3.819151e-01	ci right 3.929734e-01	k: 11623	n:30000
KS ci ratio: 1.305713e-01	ci left: 2.725927e-02	ci right 3.109930e-02	k: 874	n:30000
ANPEP   30000 perm   6 sec   (4664 perm/sec)   p_kst 2.913333e-02   p_cons 3.874333e-01   p_joint 1.153333e-01

Joint ci ratio: 6.261050e-02	ci left: 8.644877e-02	ci right 9.206102e-02	k: 3569	n:40000
Cons ci ratio: 2.477220e-02	ci left: 3.802025e-01	ci right 3.897642e-01	k: 15399	n:40000
KS ci ratio: 1.134630e-01	ci left: 2.732867e-02	ci right 3.064018e-02	k: 1158	n:40000
ANPEP   40000 perm   9 sec   (4520 perm/sec)   p_kst 2.895000e-02   p_cons 3.849750e-01   p_joint 8.922500e-02

Joint ci ratio: 6.273056e-02	ci left: 7.016308e-02	ci right 7.472671e-02	k: 3621	n:50000
Cons ci ratio: 2.314885e-02	ci left: 3.602395e-01	ci right 3.686963e-01	k: 18223	n:50000
KS ci ratio: 1.021676e-01	ci left: 2.713693e-02	ci right 3.007814e-02	k: 1429	n:50000
ANPEP   50000 perm   11 sec   (4417 perm/sec)   p_kst 2.858000e-02   p_cons 3.644600e-01   p_joint 7.242000e-02

Joint ci ratio: 6.698166e-02	ci left: 5.218838e-02	ci right 5.582157e-02	k: 3239	n:60000
Cons ci ratio: 2.063896e-02	ci left: 3.715898e-01	ci right 3.793556e-01	k: 22528	n:60000
KS ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
ANPEP   60000 perm   14 sec   (4325 perm/sec)   p_kst 2.836667e-02   p_cons 3.754667e-01   p_joint 5.398333e-02

Outputting figure to mutsig2_images.part000000000008/ANPEP.4_2984_60000_0.028367_0.37547_0.053983.png
                gene_name: ANPEP
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 57 percent done.
ANXA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 3.290415e-02	ci left: 5.768742e-01	ci right 5.962753e-01	k: 5866	n:10000
ANXA13   10000 perm   2 sec   (5893 perm/sec)   p_kst 5.866000e-01   p_cons 5.750000e-01   p_joint 6.742000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA13.4_1122_10000_0.5866_0.575_0.6742.png
                gene_name: ANXA13
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 58 percent done.
AOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 1.172831e-02	ci left: 9.123470e-01	ci right 9.232082e-01	k: 9179	n:10000
KS ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
AOC2   10000 perm   2 sec   (5472 perm/sec)   p_kst 1.180000e-02   p_cons 9.179000e-01   p_joint 7.810000e-02

Joint ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
Cons ci ratio: 8.425477e-03	ci left: 9.115086e-01	ci right 9.192701e-01	k: 18309	n:20000
KS ci ratio: 2.473661e-01	ci left: 1.086559e-02	ci right 1.397857e-02	k: 247	n:20000
AOC2   20000 perm   4 sec   (4897 perm/sec)   p_kst 1.235000e-02   p_cons 9.154500e-01   p_joint 4.720000e-02

Joint ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
Cons ci ratio: 6.841104e-03	ci left: 9.131091e-01	ci right 9.194100e-01	k: 27489	n:30000
KS ci ratio: 1.987540e-01	ci left: 1.152696e-02	ci right 1.410200e-02	k: 383	n:30000
AOC2   30000 perm   6 sec   (4672 perm/sec)   p_kst 1.276667e-02   p_cons 9.163000e-01   p_joint 4.686667e-02

Joint ci ratio: 1.089471e-01	ci left: 2.963952e-02	ci right 3.307896e-02	k: 1253	n:40000
Cons ci ratio: 5.889556e-03	ci left: 9.144565e-01	ci right 9.198828e-01	k: 36688	n:40000
KS ci ratio: 1.841603e-01	ci left: 1.016795e-02	ci right 1.225392e-02	k: 447	n:40000
AOC2   40000 perm   9 sec   (4531 perm/sec)   p_kst 1.117500e-02   p_cons 9.172000e-01   p_joint 3.132500e-02

Joint ci ratio: 9.607769e-02	ci left: 3.066987e-02	ci right 3.378475e-02	k: 1610	n:50000
Cons ci ratio: 5.269754e-03	ci left: 9.146894e-01	ci right 9.195420e-01	k: 45857	n:50000
KS ci ratio: 1.570930e-01	ci left: 1.133306e-02	ci right 1.328418e-02	k: 614	n:50000
AOC2   50000 perm   11 sec   (4422 perm/sec)   p_kst 1.228000e-02   p_cons 9.171400e-01   p_joint 3.220000e-02

Joint ci ratio: 7.834841e-02	ci left: 3.847869e-02	ci right 4.163267e-02	k: 2402	n:60000
Cons ci ratio: 4.816024e-03	ci left: 9.147302e-01	ci right 9.191627e-01	k: 55018	n:60000
KS ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
AOC2   60000 perm   14 sec   (4320 perm/sec)   p_kst 1.241667e-02   p_cons 9.169667e-01   p_joint 4.003333e-02

Joint ci ratio: 7.766587e-02	ci left: 3.374885e-02	ci right 3.648986e-02	k: 2457	n:70000
Cons ci ratio: 4.476133e-03	ci left: 9.142962e-01	ci right 9.184120e-01	k: 64146	n:70000
KS ci ratio: 1.322250e-01	ci left: 1.157951e-02	ci right 1.323270e-02	k: 867	n:70000
AOC2   70000 perm   17 sec   (4231 perm/sec)   p_kst 1.238571e-02   p_cons 9.163714e-01   p_joint 3.510000e-02

Joint ci ratio: 7.345501e-02	ci left: 3.311089e-02	ci right 3.564802e-02	k: 2749	n:80000
Cons ci ratio: 4.187595e-03	ci left: 9.144101e-01	ci right 9.182597e-01	k: 73308	n:80000
KS ci ratio: 1.240658e-01	ci left: 1.155981e-02	ci right 1.310086e-02	k: 985	n:80000
AOC2   80000 perm   19 sec   (4150 perm/sec)   p_kst 1.231250e-02   p_cons 9.163500e-01   p_joint 3.436250e-02

Joint ci ratio: 6.789917e-02	ci left: 3.449725e-02	ci right 3.693280e-02	k: 3213	n:90000
Cons ci ratio: 3.946507e-03	ci left: 9.145839e-01	ci right 9.182114e-01	k: 82477	n:90000
KS ci ratio: 1.175214e-01	ci left: 1.149300e-02	ci right 1.293870e-02	k: 1098	n:90000
AOC2   90000 perm   22 sec   (4079 perm/sec)   p_kst 1.220000e-02   p_cons 9.164111e-01   p_joint 3.570000e-02

Joint ci ratio: 6.778548e-02	ci left: 3.126199e-02	ci right 3.346524e-02	k: 3235	n:100000
Cons ci ratio: 3.741063e-03	ci left: 9.147986e-01	ci right 9.182372e-01	k: 91653	n:100000
KS ci ratio: 1.103128e-01	ci left: 1.178165e-02	ci right 1.316684e-02	k: 1246	n:100000
AOC2   100000 perm   25 sec   (4008 perm/sec)   p_kst 1.246000e-02   p_cons 9.165300e-01   p_joint 3.235000e-02

Joint ci ratio: 6.384370e-02	ci left: 3.207743e-02	ci right 3.420182e-02	k: 3644	n:110000
Cons ci ratio: 3.567015e-03	ci left: 9.148772e-01	ci right 9.181554e-01	k: 100818	n:110000
KS ci ratio: 1.049354e-01	ci left: 1.186948e-02	ci right 1.319277e-02	k: 1377	n:110000
AOC2   110000 perm   28 sec   (3939 perm/sec)   p_kst 1.251818e-02   p_cons 9.165273e-01   p_joint 3.312727e-02

Joint ci ratio: 5.684569e-02	ci left: 3.703209e-02	ci right 3.920697e-02	k: 4573	n:120000
Cons ci ratio: 3.411848e-03	ci left: 9.150970e-01	ci right 9.182328e-01	k: 110001	n:120000
KS ci ratio: 1.003421e-01	ci left: 1.192778e-02	ci right 1.319593e-02	k: 1506	n:120000
AOC2   120000 perm   31 sec   (3885 perm/sec)   p_kst 1.255000e-02   p_cons 9.166750e-01   p_joint 3.810833e-02

Joint ci ratio: 5.691293e-02	ci left: 3.420477e-02	ci right 3.621604e-02	k: 4576	n:130000
Cons ci ratio: 3.278939e-03	ci left: 9.151149e-01	ci right 9.181280e-01	k: 119162	n:130000
KS ci ratio: 9.675385e-02	ci left: 1.186556e-02	ci right 1.307941e-02	k: 1620	n:130000
AOC2   130000 perm   34 sec   (3831 perm/sec)   p_kst 1.246154e-02   p_cons 9.166308e-01   p_joint 3.520000e-02

Outputting figure to mutsig2_images.part000000000008/AOC2.4_2287_130000_0.012462_0.91663_0.0352.png
                gene_name: AOC2
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 60 percent done.
AP1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
Cons ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
KS ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
AP1B1   10000 perm   2 sec   (5128 perm/sec)   p_kst 3.378000e-01   p_cons 1.448000e-01   p_joint 2.597000e-01

Outputting figure to mutsig2_images.part000000000008/AP1B1.4_2938_10000_0.3378_0.1448_0.2597.png
                gene_name: AP1B1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 62 percent done.
ANKRD33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
Cons ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
KS ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
ANKRD33   10000 perm   2 sec   (6115 perm/sec)   p_kst 1.305000e-01   p_cons 7.172000e-01   p_joint 3.514000e-01

Joint ci ratio: 4.004706e-02	ci left: 3.173657e-01	ci right 3.303855e-01	k: 6477	n:20000
Cons ci ratio: 1.740100e-02	ci left: 7.110028e-01	ci right 7.235339e-01	k: 14346	n:20000
KS ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
ANKRD33   20000 perm   4 sec   (5412 perm/sec)   p_kst 1.305000e-01   p_cons 7.173000e-01   p_joint 3.238500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD33.3_1444_20000_0.1305_0.7173_0.32385.png
                gene_name: ANKRD33
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 63 percent done.
ANKRD36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
ANKRD36   10000 perm   2 sec   (4438 perm/sec)   p_kst 3.963000e-01   p_cons 2.885000e-01   p_joint 3.371000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD36.3_6126_10000_0.3963_0.2885_0.3371.png
                gene_name: ANKRD36
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 65 percent done.
ANKRD53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
Cons ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
KS ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
ANKRD53   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.352000e-01   p_cons 8.723000e-01   p_joint 3.231000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD53.3_1748_10000_0.1352_0.8723_0.3231.png
                gene_name: ANKRD53
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 66 percent done.
ANTXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
Cons ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
KS ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
ANTXR2   10000 perm   2 sec   (6036 perm/sec)   p_kst 5.584000e-01   p_cons 5.479000e-01   p_joint 6.079000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR2.3_1577_10000_0.5584_0.5479_0.6079.png
                gene_name: ANTXR2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 68 percent done.
ANUBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
Cons ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
KS ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
ANUBL1   10000 perm   2 sec   (5778 perm/sec)   p_kst 1.753000e-01   p_cons 2.894000e-01   p_joint 1.651000e-01

Outputting figure to mutsig2_images.part000000000008/ANUBL1.3_2220_10000_0.1753_0.2894_0.1651.png
                gene_name: ANUBL1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 69 percent done.
ANXA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
Cons ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
ANXA10   10000 perm   2 sec   (6248 perm/sec)   p_kst 8.178000e-01   p_cons 6.550000e-02   p_joint 4.397000e-01

Joint ci ratio: 2.686223e-02	ci left: 5.086970e-01	ci right 5.225984e-01	k: 10313	n:20000
Cons ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
KS ci ratio: 1.307946e-02	ci left: 8.124803e-01	ci right 8.232271e-01	k: 16358	n:20000
ANXA10   20000 perm   4 sec   (5477 perm/sec)   p_kst 8.179000e-01   p_cons 7.565000e-02   p_joint 5.156500e-01

Outputting figure to mutsig2_images.part000000000008/ANXA10.3_1023_20000_0.8179_0.07565_0.51565.png
                gene_name: ANXA10
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 71 percent done.
ANXA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
ANXA11   10000 perm   2 sec   (5897 perm/sec)   p_kst 6.280000e-01   p_cons 8.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANXA11.3_1574_10000_0.628_0.8375_1.png
                gene_name: ANXA11
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
ANXA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
Cons ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
ANXA3   10000 perm   2 sec   (6369 perm/sec)   p_kst 2.594000e-01   p_cons 3.578000e-01   p_joint 3.195000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA3.3_1020_10000_0.2594_0.3578_0.3195.png
                gene_name: ANXA3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 74 percent done.
ANXA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
Cons ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
ANXA4   10000 perm   2 sec   (6416 perm/sec)   p_kst 6.863000e-01   p_cons 1.375000e-01   p_joint 4.449000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA4.3_1014_10000_0.6863_0.1375_0.4449.png
                gene_name: ANXA4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 75 percent done.
AP1G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
Cons ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
AP1G1   10000 perm   2 sec   (5500 perm/sec)   p_kst 3.013000e-01   p_cons 8.896000e-01   p_joint 3.814000e-01

Outputting figure to mutsig2_images.part000000000008/AP1G1.3_2570_10000_0.3013_0.8896_0.3814.png
                gene_name: AP1G1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 77 percent done.
AP1G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
AP1G2   10000 perm   2 sec   (5728 perm/sec)   p_kst 7.800000e-01   p_cons 2.044000e-01   p_joint 6.120000e-01

Outputting figure to mutsig2_images.part000000000008/AP1G2.3_2442_10000_0.78_0.2044_0.612.png
                gene_name: AP1G2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 78 percent done.
ANKRD13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
Cons ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
KS ci ratio: 4.542946e-02	ci left: 4.169786e-01	ci right 4.364641e-01	k: 4267	n:10000
ANKRD13A   10000 perm   2 sec   (6186 perm/sec)   p_kst 4.267000e-01   p_cons 3.358000e-01   p_joint 9.510000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD13A.2_1833_10000_0.4267_0.3358_0.951.png
                gene_name: ANKRD13A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 80 percent done.
ANKRD13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
Cons ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
KS ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
ANKRD13C   10000 perm   2 sec   (6132 perm/sec)   p_kst 5.927000e-01   p_cons 2.036000e-01   p_joint 9.753000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD13C.2_1678_10000_0.5927_0.2036_0.9753.png
                gene_name: ANKRD13C
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
ANKRD22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
ANKRD22   10000 perm   1 sec   (6728 perm/sec)   p_kst 2.969000e-01   p_cons 3.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD22.2_600_10000_0.2969_0.3485_1.png
                gene_name: ANKRD22
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ANKRD29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
ANKRD29   10000 perm   2 sec   (6617 perm/sec)   p_kst 5.840000e-01   p_cons 2.170000e-02   p_joint 1.009000e-01

Joint ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
Cons ci ratio: 1.837425e-01	ci left: 2.020279e-02	ci right 2.433773e-02	k: 444	n:20000
KS ci ratio: 2.326088e-02	ci left: 5.798884e-01	ci right 5.935864e-01	k: 11735	n:20000
ANKRD29   20000 perm   3 sec   (5828 perm/sec)   p_kst 5.867500e-01   p_cons 2.220000e-02   p_joint 1.187000e-01

Joint ci ratio: 6.416784e-02	ci left: 1.070721e-01	ci right 1.142035e-01	k: 3318	n:30000
Cons ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
KS ci ratio: 1.904048e-02	ci left: 5.799341e-01	ci right 5.911160e-01	k: 17566	n:30000
ANKRD29   30000 perm   5 sec   (5525 perm/sec)   p_kst 5.855333e-01   p_cons 2.373333e-02   p_joint 1.106000e-01

Joint ci ratio: 5.941195e-02	ci left: 9.522646e-02	ci right 1.010820e-01	k: 3925	n:40000
Cons ci ratio: 1.253906e-01	ci left: 2.235264e-02	ci right 2.536703e-02	k: 953	n:40000
KS ci ratio: 1.643483e-02	ci left: 5.823064e-01	ci right 5.919809e-01	k: 23486	n:40000
ANKRD29   40000 perm   8 sec   (5322 perm/sec)   p_kst 5.871500e-01   p_cons 2.382500e-02   p_joint 9.812500e-02

Joint ci ratio: 5.313677e-02	ci left: 9.554569e-02	ci right 1.007811e-01	k: 4907	n:50000
Cons ci ratio: 1.124674e-01	ci left: 2.238440e-02	ci right 2.507128e-02	k: 1185	n:50000
KS ci ratio: 1.466561e-02	ci left: 5.839512e-01	ci right 5.925985e-01	k: 29414	n:50000
ANKRD29   50000 perm   10 sec   (5181 perm/sec)   p_kst 5.882800e-01   p_cons 2.370000e-02   p_joint 9.814000e-02

Joint ci ratio: 4.738474e-02	ci left: 9.995211e-02	ci right 1.048198e-01	k: 6142	n:60000
Cons ci ratio: 1.019806e-01	ci left: 2.280636e-02	ci right 2.527331e-02	k: 1441	n:60000
KS ci ratio: 1.334268e-02	ci left: 5.859685e-01	ci right 5.938561e-01	k: 35395	n:60000
ANKRD29   60000 perm   12 sec   (5048 perm/sec)   p_kst 5.899167e-01   p_cons 2.401667e-02   p_joint 1.023667e-01

Joint ci ratio: 4.443780e-02	ci left: 9.781537e-02	ci right 1.022750e-01	k: 7002	n:70000
Cons ci ratio: 9.433920e-02	ci left: 2.293466e-02	ci right 2.521931e-02	k: 1684	n:70000
KS ci ratio: 1.233005e-02	ci left: 5.871611e-01	ci right 5.944600e-01	k: 41357	n:70000
ANKRD29   70000 perm   14 sec   (4934 perm/sec)   p_kst 5.908143e-01   p_cons 2.405714e-02   p_joint 1.000286e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD29.2_946_70000_0.59081_0.024057_0.10003.png
                gene_name: ANKRD29
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 85 percent done.
ANKRD36B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KS ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
ANKRD36B   10000 perm   2 sec   (5348 perm/sec)   p_kst 1.484000e-01   p_cons 2.295000e-01   p_joint 1.089000e-01

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 5.041046e-02	ci left: 2.262634e-01	ci right 2.380146e-01	k: 4642	n:20000
KS ci ratio: 6.607308e-02	ci left: 1.446830e-01	ci right 1.546191e-01	k: 2992	n:20000
ANKRD36B   20000 perm   4 sec   (4789 perm/sec)   p_kst 1.496000e-01   p_cons 2.321000e-01   p_joint 1.454500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD36B.2_4234_20000_0.1496_0.2321_0.14545.png
                gene_name: ANKRD36B
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 86 percent done.
ANKRD42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
KS ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
ANKRD42   10000 perm   1 sec   (6722 perm/sec)   p_kst 7.923000e-01   p_cons 9.790000e-02   p_joint 1

Joint ci ratio: 2.117530e-02	ci left: 6.247205e-01	ci right 6.381413e-01	k: 12629	n:20000
Cons ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
KS ci ratio: 1.431501e-02	ci left: 7.837328e-01	ci right 7.950829e-01	k: 15789	n:20000
ANKRD42   20000 perm   3 sec   (5913 perm/sec)   p_kst 7.894500e-01   p_cons 9.825000e-02   p_joint 6.314500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD42.2_1210_20000_0.78945_0.09825_0.63145.png
                gene_name: ANKRD42
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 88 percent done.
ANKRD57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
Cons ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
KS ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
ANKRD57   10000 perm   2 sec   (6292 perm/sec)   p_kst 4.137000e-01   p_cons 4.424000e-01   p_joint 4.504000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD57.2_1582_10000_0.4137_0.4424_0.4504.png
                gene_name: ANKRD57
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 89 percent done.
ANKS1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
Cons ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
KS ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
ANKS1A   10000 perm   2 sec   (5447 perm/sec)   p_kst 4.324000e-01   p_cons 3.332000e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS1A.2_3501_10000_0.4324_0.3332_0.385.png
                gene_name: ANKS1A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 91 percent done.
ANO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
KS ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
ANO1   10000 perm   2 sec   (5579 perm/sec)   p_kst 7.674000e-01   p_cons 1.930000e-02   p_joint 2.910000e-02

Joint ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
Cons ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
KS ci ratio: 1.521976e-02	ci left: 7.624393e-01	ci right 7.741826e-01	k: 15367	n:20000
ANO1   20000 perm   4 sec   (4971 perm/sec)   p_kst 7.683500e-01   p_cons 1.840000e-02   p_joint 2.250000e-02

Joint ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
Cons ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
KS ci ratio: 1.241583e-02	ci left: 7.638524e-01	ci right 7.734289e-01	k: 23060	n:30000
ANO1   30000 perm   6 sec   (4757 perm/sec)   p_kst 7.686667e-01   p_cons 1.966667e-02   p_joint 2.963333e-02

Joint ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
Cons ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
KS ci ratio: 1.079147e-02	ci left: 7.632027e-01	ci right 7.715085e-01	k: 30695	n:40000
ANO1   40000 perm   9 sec   (4603 perm/sec)   p_kst 7.673750e-01   p_cons 1.362500e-02   p_joint 2.042500e-02

Joint ci ratio: 1.202821e-01	ci left: 1.954755e-02	ci right 2.206852e-02	k: 1039	n:50000
Cons ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
KS ci ratio: 9.656370e-03	ci left: 7.634903e-01	ci right 7.709186e-01	k: 38361	n:50000
ANO1   50000 perm   11 sec   (4493 perm/sec)   p_kst 7.672200e-01   p_cons 1.402000e-02   p_joint 2.078000e-02

Joint ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
Cons ci ratio: 1.340591e-01	ci left: 1.310736e-02	ci right 1.500674e-02	k: 842	n:60000
KS ci ratio: 8.837721e-03	ci left: 7.628927e-01	ci right 7.696815e-01	k: 45978	n:60000
ANO1   60000 perm   14 sec   (4395 perm/sec)   p_kst 7.663000e-01   p_cons 1.403333e-02   p_joint 2.091667e-02

Joint ci ratio: 1.008119e-01	ci left: 2.007595e-02	ci right 2.222114e-02	k: 1479	n:70000
Cons ci ratio: 1.228228e-01	ci left: 1.346123e-02	ci right 1.523650e-02	k: 1003	n:70000
KS ci ratio: 8.168760e-03	ci left: 7.637354e-01	ci right 7.700139e-01	k: 53682	n:70000
ANO1   70000 perm   16 sec   (4307 perm/sec)   p_kst 7.668857e-01   p_cons 1.432857e-02   p_joint 2.112857e-02

Joint ci ratio: 9.391680e-02	ci left: 2.031064e-02	ci right 2.232429e-02	k: 1704	n:80000
Cons ci ratio: 1.140576e-01	ci left: 1.371948e-02	ci right 1.539099e-02	k: 1163	n:80000
KS ci ratio: 7.652623e-03	ci left: 7.634019e-01	ci right 7.692788e-01	k: 61308	n:80000
ANO1   80000 perm   19 sec   (4216 perm/sec)   p_kst 7.663500e-01   p_cons 1.453750e-02   p_joint 2.130000e-02

Joint ci ratio: 8.892836e-02	ci left: 2.019270e-02	ci right 2.208278e-02	k: 1901	n:90000
Cons ci ratio: 1.080169e-01	ci left: 1.364262e-02	ci right 1.521113e-02	k: 1297	n:90000
KS ci ratio: 7.207463e-03	ci left: 7.639451e-01	ci right 7.694822e-01	k: 69005	n:90000
ANO1   90000 perm   22 sec   (4125 perm/sec)   p_kst 7.667222e-01   p_cons 1.441111e-02   p_joint 2.112222e-02

Joint ci ratio: 8.431057e-02	ci left: 2.026712e-02	ci right 2.206080e-02	k: 2115	n:100000
Cons ci ratio: 1.025903e-01	ci left: 1.365124e-02	ci right 1.513713e-02	k: 1438	n:100000
KS ci ratio: 6.839363e-03	ci left: 7.639957e-01	ci right 7.692488e-01	k: 76663	n:100000
ANO1   100000 perm   25 sec   (4050 perm/sec)   p_kst 7.666300e-01   p_cons 1.438000e-02   p_joint 2.115000e-02

Joint ci ratio: 8.016912e-02	ci left: 2.041921e-02	ci right 2.213343e-02	k: 2339	n:110000
Cons ci ratio: 9.743884e-02	ci left: 1.379298e-02	ci right 1.521460e-02	k: 1594	n:110000
KS ci ratio: 6.514665e-03	ci left: 7.644720e-01	ci right 7.694776e-01	k: 84368	n:110000
ANO1   110000 perm   28 sec   (3985 perm/sec)   p_kst 7.669818e-01   p_cons 1.449091e-02   p_joint 2.126364e-02

Outputting figure to mutsig2_images.part000000000008/ANO1.2_3065_110000_0.76698_0.014491_0.021264.png
                gene_name: ANO1
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 92 percent done.
ANP32E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
ANP32E   10000 perm   1 sec   (6859 perm/sec)   p_kst 3.481000e-01   p_cons 7.748000e-01   p_joint 7.357000e-01

Outputting figure to mutsig2_images.part000000000008/ANP32E.2_835_10000_0.3481_0.7748_0.7357.png
                gene_name: ANP32E
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 94 percent done.
ANXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
KS ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
ANXA1   10000 perm   2 sec   (6443 perm/sec)   p_kst 5.641000e-01   p_cons 7.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANXA1.2_1089_10000_0.5641_0.7585_1.png
                gene_name: ANXA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
ANXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
Cons ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
KS ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
ANXA2   10000 perm   1 sec   (6823 perm/sec)   p_kst 3.479000e-01   p_cons 1.225000e-01   p_joint 3.485000e-01

Joint ci ratio: 3.509997e-02	ci left: 3.773016e-01	ci right 3.908321e-01	k: 7681	n:20000
Cons ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
KS ci ratio: 3.806229e-02	ci left: 3.399028e-01	ci right 3.531418e-01	k: 6930	n:20000
ANXA2   20000 perm   3 sec   (5925 perm/sec)   p_kst 3.465000e-01   p_cons 1.061000e-01   p_joint 3.840500e-01

Outputting figure to mutsig2_images.part000000000008/ANXA2.2_1126_20000_0.3465_0.1061_0.38405.png
                gene_name: ANXA2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 97 percent done.
ANXA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
Cons ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
KS ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
ANXA5   10000 perm   1 sec   (6675 perm/sec)   p_kst 3.696000e-01   p_cons 6.338000e-01   p_joint 7.577000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA5.2_1011_10000_0.3696_0.6338_0.7577.png
                gene_name: ANXA5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 98 percent done.
ANXA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
Cons ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
KS ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
ANXA9   10000 perm   2 sec   (6613 perm/sec)   p_kst 5.460000e-01   p_cons 5.514000e-01   p_joint 8.343000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA9.2_1086_10000_0.546_0.5514_0.8343.png
                gene_name: ANXA9
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000008
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 8 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1542>
Subject: Job 4421701: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1542>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000009> was used as the working directory.
Started at Wed Oct 24 17:30:03 2012
Results reported at Wed Oct 24 18:21:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000009.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000009.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 9  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000009.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2457.53 sec.
    Max Memory :      5366 MB
    Max Swap   :      7669 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
9
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 9
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 9: processing genes 725 - 814
Calculating significance of each gene.
Using projection method.
725	AP1M1	7.337282e-01
726	AP1M2	4.526018e-01
727	AP1S1	3.693142e-01
728	AP1S2	1
729	AP1S3	1
730	AP2A1	9.608660e-01
731	AP2A2	7.004035e-01
732	AP2B1	1
733	AP2M1	3.281215e-01
734	AP2S1	1
735	AP3B1	1
736	AP3B2	9.943757e-01
737	AP3D1	9.992248e-01
738	AP3M1	1
739	AP3M2	1
740	AP3S1	4.030875e-03
741	AP3S2	2.626131e-01
742	AP4B1	8.137313e-01
743	AP4E1	8.144615e-01
744	AP4M1	8.875325e-01
745	AP4S1	1
In gene APAF1 the following bins exceed PROBCAP:
    LUAD-17-Z004-TP	categ 6	N = 3851    n = 1	mu =   2.01e-07
746	APAF1	8.951356e-01
747	APBA1	7.082548e-01
748	APBA2	8.555098e-01
749	APBA3	1
750	APBB1	8.371046e-01
751	APBB1IP	2.246839e-01
752	APBB2	7.620950e-01
753	APBB3	5.473286e-01
In gene APC the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 8592    n = 1	mu =   6.02e-07
754	APC	1.412247e-02
755	APC2	9.945144e-01
756	APCDD1	7.629452e-01
757	APCDD1L	4.541067e-01
758	APCS	6.470335e-03
759	APEH	9.887700e-01
In gene APEX1 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 973     n = 1	mu =   9.71e-07
760	APEX1	3.335249e-01
761	APEX2	4.148721e-01
762	APH1A	1
763	APH1B	8.159477e-01
764	API5	7.361633e-01
765	APIP	1
766	APITD1	1
767	APLF	8.172150e-01
768	APLNR	8.735941e-01
769	APLP1	8.561519e-01
770	APLP2	9.595710e-01
771	APOA1	8.565040e-01
772	APOA1BP	1
773	APOA2	1
774	APOA4	1
775	APOA5	3.266024e-01
776	APOB	1
777	APOB48R	2.617786e-01
778	APOBEC1	1
779	APOBEC2	1
780	APOBEC3A	1
781	APOBEC3B	1.973628e-01
782	APOBEC3C	1
783	APOBEC3D	7.801848e-01
784	APOBEC3F	1
785	APOBEC3G	2.212773e-01
786	APOBEC3H	2.960336e-01
787	APOBEC4	8.169147e-01
788	APOC1	1
789	APOC2	2.293136e-01
790	APOC3	2.540864e-02
791	APOC4	4.693424e-01
792	APOD	1
793	APOE	6.041018e-01
794	APOF	1
795	APOH	6.667885e-01
796	APOL1	1
797	APOL2	7.929371e-01
798	APOL3	6.421323e-01
799	APOL4	7.397804e-01
800	APOL5	8.121194e-01
801	APOL6	6.275276e-01
802	APOLD1	1
803	APOM	1
804	APOO	1
805	APOOL	1
806	APP	1
807	APPBP2	7.230193e-03
808	APPL1	9.275399e-01
809	APPL2	9.527628e-01
810	APRT	1
811	APTX	8.027116e-01
812	AQP1	1
813	AQP10	3.009291e-01
814	AQP11	8.550756e-01
Done

Running MutSig 2:
Scatter job 9: processing genes 725 - 814
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
APOB
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
KS ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
APOB   10000 perm   7 sec   (1464 perm/sec)   p_kst 6.380000e-02   p_cons 3.388000e-01   p_joint 1.050000e-01

Joint ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
Cons ci ratio: 3.848626e-02	ci left: 3.349263e-01	ci right 3.481198e-01	k: 6830	n:20000
KS ci ratio: 1.039341e-01	ci left: 6.293881e-02	ci right 6.988790e-02	k: 1327	n:20000
APOB   20000 perm   18 sec   (1129 perm/sec)   p_kst 6.635000e-02   p_cons 3.415000e-01   p_joint 1.217000e-01

Joint ci ratio: 5.927464e-02	ci left: 1.234492e-01	ci right 1.310232e-01	k: 3816	n:30000
Cons ci ratio: 3.144836e-02	ci left: 3.358007e-01	ci right 3.465634e-01	k: 10235	n:30000
KS ci ratio: 8.504552e-02	ci left: 6.331395e-02	ci right 6.897043e-02	k: 1983	n:30000
APOB   30000 perm   25 sec   (1200 perm/sec)   p_kst 6.610000e-02   p_cons 3.411667e-01   p_joint 1.272000e-01

Outputting figure to mutsig2_images.part000000000009/APOB.67_13808_30000_0.0661_0.34117_0.1272.png
                gene_name: APOB
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
APC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
Cons ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
KS ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
APC   10000 perm   4 sec   (2559 perm/sec)   p_kst 5.130000e-02   p_cons 9.284000e-01   p_joint 1.273000e-01

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 7.512748e-03	ci left: 9.280134e-01	ci right 9.350605e-01	k: 18632	n:20000
KS ci ratio: 1.185293e-01	ci left: 4.876885e-02	ci right 5.496225e-02	k: 1036	n:20000
APC   20000 perm   8 sec   (2387 perm/sec)   p_kst 5.180000e-02   p_cons 9.316000e-01   p_joint 1.167500e-01

Joint ci ratio: 6.989320e-02	ci left: 9.157345e-02	ci right 9.823857e-02	k: 2846	n:30000
Cons ci ratio: 6.056269e-03	ci left: 9.303159e-01	ci right 9.359999e-01	k: 27996	n:30000
KS ci ratio: 9.598481e-02	ci left: 5.013325e-02	ci right 5.522049e-02	k: 1579	n:30000
APC   30000 perm   13 sec   (2323 perm/sec)   p_kst 5.263333e-02   p_cons 9.332000e-01   p_joint 9.486667e-02

Outputting figure to mutsig2_images.part000000000009/APC.23_8592_30000_0.052633_0.9332_0.094867.png
                gene_name: APC
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 4 percent done.
APPBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
Cons ci ratio: 1.870226e-02	ci left: 8.068419e-01	ci right 8.221744e-01	k: 8146	n:10000
KS ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
APPBP2   10000 perm   4 sec   (2843 perm/sec)   p_kst 7.598000e-01   p_cons 8.146000e-01   p_joint 8.495000e-01

Outputting figure to mutsig2_images.part000000000009/APPBP2.10_1810_10000_0.7598_0.8146_0.8495.png
                gene_name: APPBP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 6 percent done.
APBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
Cons ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KS ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
APBB2   10000 perm   2 sec   (4710 perm/sec)   p_kst 9.330000e-02   p_cons 2.880000e-02   p_joint 6.290000e-02

Joint ci ratio: 1.509924e-01	ci left: 3.013378e-02	ci right 3.510332e-02	k: 651	n:20000
Cons ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
KS ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
APBB2   20000 perm   5 sec   (4247 perm/sec)   p_kst 9.450000e-02   p_cons 2.810000e-02   p_joint 3.255000e-02

Joint ci ratio: 1.197251e-01	ci left: 3.243089e-02	ci right 3.659322e-02	k: 1034	n:30000
Cons ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
KS ci ratio: 7.053832e-02	ci left: 9.003158e-02	ci right 9.664741e-02	k: 2799	n:30000
APBB2   30000 perm   7 sec   (4063 perm/sec)   p_kst 9.330000e-02   p_cons 2.763333e-02   p_joint 3.446667e-02

Joint ci ratio: 1.053574e-01	ci left: 3.168498e-02	ci right 3.523317e-02	k: 1337	n:40000
Cons ci ratio: 1.160135e-01	ci left: 2.613788e-02	ci right 2.938116e-02	k: 1109	n:40000
KS ci ratio: 5.756794e-02	ci left: 1.008767e-01	ci right 1.068809e-01	k: 4154	n:40000
APBB2   40000 perm   10 sec   (3950 perm/sec)   p_kst 1.038500e-01   p_cons 2.772500e-02   p_joint 3.342500e-02

Joint ci ratio: 9.679396e-02	ci left: 3.022063e-02	ci right 3.331405e-02	k: 1587	n:50000
Cons ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
KS ci ratio: 5.144485e-02	ci left: 1.013571e-01	ci right 1.067289e-01	k: 5201	n:50000
APBB2   50000 perm   13 sec   (3846 perm/sec)   p_kst 1.040200e-01   p_cons 2.760000e-02   p_joint 3.174000e-02

Joint ci ratio: 7.705475e-02	ci left: 3.975444e-02	ci right 4.295679e-02	k: 2480	n:60000
Cons ci ratio: 9.380188e-02	ci left: 2.695507e-02	ci right 2.962415e-02	k: 1696	n:60000
KS ci ratio: 4.690974e-02	ci left: 1.017992e-01	ci right 1.067058e-01	k: 6254	n:60000
APBB2   60000 perm   16 sec   (3761 perm/sec)   p_kst 1.042333e-01   p_cons 2.826667e-02   p_joint 4.133333e-02

Outputting figure to mutsig2_images.part000000000009/APBB2.9_2336_60000_0.10423_0.028267_0.041333.png
                gene_name: APBB2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 9 percent done.
APOB48R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
KS ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
APOB48R   10000 perm   2 sec   (4111 perm/sec)   p_kst 1.430000e-02   p_cons 9.310000e-01   p_joint 5.790000e-02

Joint ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
Cons ci ratio: 7.629907e-03	ci left: 9.259667e-01	ci right 9.331078e-01	k: 18592	n:20000
KS ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
APOB48R   20000 perm   5 sec   (3817 perm/sec)   p_kst 1.435000e-02   p_cons 9.296000e-01   p_joint 6.160000e-02

Joint ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
Cons ci ratio: 6.122362e-03	ci left: 9.289227e-01	ci right 9.346600e-01	k: 27955	n:30000
KS ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
APOB48R   30000 perm   8 sec   (3666 perm/sec)   p_kst 1.446667e-02   p_cons 9.318333e-01   p_joint 6.510000e-02

Joint ci ratio: 7.364191e-02	ci left: 6.370880e-02	ci right 6.860441e-02	k: 2645	n:40000
Cons ci ratio: 5.279254e-03	ci left: 9.298702e-01	ci right 9.348168e-01	k: 37295	n:40000
KS ci ratio: 1.582918e-01	ci left: 1.390368e-02	ci right 1.631746e-02	k: 603	n:40000
APOB48R   40000 perm   11 sec   (3589 perm/sec)   p_kst 1.507500e-02   p_cons 9.323750e-01   p_joint 6.612500e-02

Joint ci ratio: 7.758085e-02	ci left: 4.669220e-02	ci right 5.048043e-02	k: 2428	n:50000
Cons ci ratio: 4.565462e-03	ci left: 9.343271e-01	ci right 9.386221e-01	k: 46825	n:50000
KS ci ratio: 1.332261e-01	ci left: 1.588502e-02	ci right 1.817155e-02	k: 850	n:50000
APOB48R   50000 perm   14 sec   (3523 perm/sec)   p_kst 1.700000e-02   p_cons 9.365000e-01   p_joint 4.856000e-02

Joint ci ratio: 6.613363e-02	ci left: 5.348434e-02	ci right 5.715882e-02	k: 3318	n:60000
Cons ci ratio: 4.157077e-03	ci left: 9.348235e-01	ci right 9.387341e-01	k: 56208	n:60000
KS ci ratio: 1.228605e-01	ci left: 1.565741e-02	ci right 1.772305e-02	k: 1000	n:60000
APOB48R   60000 perm   17 sec   (3452 perm/sec)   p_kst 1.666667e-02   p_cons 9.368000e-01   p_joint 5.530000e-02

Joint ci ratio: 6.565526e-02	ci left: 4.686397e-02	ci right 5.005931e-02	k: 3391	n:70000
Cons ci ratio: 3.864411e-03	ci left: 9.344800e-01	ci right 9.381123e-01	k: 65542	n:70000
KS ci ratio: 1.123287e-01	ci left: 1.613862e-02	ci right 1.807313e-02	k: 1196	n:70000
APOB48R   70000 perm   21 sec   (3391 perm/sec)   p_kst 1.708571e-02   p_cons 9.363143e-01   p_joint 4.844286e-02

Joint ci ratio: 5.969179e-02	ci left: 4.962113e-02	ci right 5.268653e-02	k: 4091	n:80000
Cons ci ratio: 3.612569e-03	ci left: 9.346741e-01	ci right 9.380691e-01	k: 74911	n:80000
KS ci ratio: 1.043775e-01	ci left: 1.641995e-02	ci right 1.824030e-02	k: 1385	n:80000
APOB48R   80000 perm   24 sec   (3338 perm/sec)   p_kst 1.731250e-02   p_cons 9.363875e-01   p_joint 5.113750e-02

Joint ci ratio: 5.757825e-02	ci left: 4.756581e-02	ci right 5.039668e-02	k: 4407	n:90000
Cons ci ratio: 3.413829e-03	ci left: 9.344937e-01	ci right 9.377003e-01	k: 84250	n:90000
KS ci ratio: 9.828789e-02	ci left: 1.651240e-02	ci right 1.823003e-02	k: 1562	n:90000
APOB48R   90000 perm   27 sec   (3288 perm/sec)   p_kst 1.735556e-02   p_cons 9.361111e-01   p_joint 4.896667e-02

Outputting figure to mutsig2_images.part000000000009/APOB48R.9_3287_90000_0.017356_0.93611_0.048967.png
                gene_name: APOB48R
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 11 percent done.
APAF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
Cons ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
KS ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
APAF1   10000 perm   4 sec   (2623 perm/sec)   p_kst 4.945000e-01   p_cons 7.909000e-01   p_joint 6.916000e-01

Outputting figure to mutsig2_images.part000000000009/APAF1.7_3851_10000_0.4945_0.7909_0.6916.png
                gene_name: APAF1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 13 percent done.
AP3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
Cons ci ratio: 7.778311e-03	ci left: 9.582750e-01	ci right 9.658527e-01	k: 9622	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
AP3B2   10000 perm   6 sec   (1785 perm/sec)   p_kst 4.840000e-01   p_cons 9.622000e-01   p_joint 7.008000e-01

Outputting figure to mutsig2_images.part000000000009/AP3B2.7_3277_10000_0.484_0.9622_0.7008.png
                gene_name: AP3B2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
AQP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
KS ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
AQP10   10000 perm   3 sec   (3740 perm/sec)   p_kst 8.151000e-01   p_cons 3.579000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000009/AQP10.7_930_10000_0.8151_0.3579_0.8305.png
                gene_name: AQP10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 17 percent done.
AP2M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
Cons ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
KS ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
AP2M1   10000 perm   4 sec   (2607 perm/sec)   p_kst 9.420000e-02   p_cons 9.380000e-02   p_joint 5.630000e-02

Joint ci ratio: 1.185293e-01	ci left: 4.876885e-02	ci right 5.496225e-02	k: 1036	n:20000
Cons ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
KS ci ratio: 8.315414e-02	ci left: 9.582658e-02	ci right 1.041901e-01	k: 1999	n:20000
AP2M1   20000 perm   9 sec   (2212 perm/sec)   p_kst 9.995000e-02   p_cons 9.215000e-02   p_joint 5.180000e-02

Joint ci ratio: 7.944216e-02	ci left: 7.207681e-02	ci right 7.807245e-02	k: 2251	n:30000
Cons ci ratio: 7.138506e-02	ci left: 8.806365e-02	ci right 9.461574e-02	k: 2739	n:30000
KS ci ratio: 6.749624e-02	ci left: 9.764512e-02	ci right 1.044990e-01	k: 3031	n:30000
AP2M1   30000 perm   14 sec   (2082 perm/sec)   p_kst 1.010333e-01   p_cons 9.130000e-02   p_joint 7.503333e-02

Outputting figure to mutsig2_images.part000000000009/AP2M1.5_1349_30000_0.10103_0.0913_0.075033.png
                gene_name: AP2M1
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 19 percent done.
AP3D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
AP3D1   10000 perm   4 sec   (2849 perm/sec)   p_kst 7.127000e-01   p_cons 2.722000e-01   p_joint 5.464000e-01

Outputting figure to mutsig2_images.part000000000009/AP3D1.5_3740_10000_0.7127_0.2722_0.5464.png
                gene_name: AP3D1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 21 percent done.
AP3S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
Cons ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
KS ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
AP3S1   10000 perm   4 sec   (2436 perm/sec)   p_kst 7.414000e-01   p_cons 7.790000e-02   p_joint 3.573000e-01

Joint ci ratio: 3.753461e-02	ci left: 3.462242e-01	ci right 3.595186e-01	k: 7057	n:20000
Cons ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
KS ci ratio: 1.676311e-02	ci left: 7.260046e-01	ci right 7.383279e-01	k: 14644	n:20000
AP3S1   20000 perm   10 sec   (2087 perm/sec)   p_kst 7.322000e-01   p_cons 7.490000e-02   p_joint 3.528500e-01

Outputting figure to mutsig2_images.part000000000009/AP3S1.5_606_20000_0.7322_0.0749_0.35285.png
                gene_name: AP3S1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 23 percent done.
AP4E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
KS ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
AP4E1   10000 perm   5 sec   (2067 perm/sec)   p_kst 9.738000e-01   p_cons 1.441000e-01   p_joint 3.955000e-01

Outputting figure to mutsig2_images.part000000000009/AP4E1.5_3498_10000_0.9738_0.1441_0.3955.png
                gene_name: AP4E1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 26 percent done.
APBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
Cons ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
KS ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
APBA2   10000 perm   4 sec   (2531 perm/sec)   p_kst 2.348000e-01   p_cons 7.369000e-01   p_joint 3.453000e-01

Outputting figure to mutsig2_images.part000000000009/APBA2.5_2298_10000_0.2348_0.7369_0.3453.png
                gene_name: APBA2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 28 percent done.
APBB1IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
KS ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
APBB1IP   10000 perm   4 sec   (2356 perm/sec)   p_kst 1.538000e-01   p_cons 2.740000e-02   p_joint 9.490000e-02

Joint ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
Cons ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
KS ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
APBB1IP   20000 perm   9 sec   (2313 perm/sec)   p_kst 1.504000e-01   p_cons 2.830000e-02   p_joint 5.075000e-02

Joint ci ratio: 1.208175e-01	ci left: 3.184836e-02	ci right 3.597588e-02	k: 1016	n:30000
Cons ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
KS ci ratio: 5.369929e-02	ci left: 1.467679e-01	ci right 1.548999e-01	k: 4524	n:30000
APBB1IP   30000 perm   11 sec   (2667 perm/sec)   p_kst 1.508000e-01   p_cons 2.826667e-02   p_joint 3.386667e-02

Joint ci ratio: 1.003087e-01	ci left: 3.492738e-02	ci right 3.864025e-02	k: 1470	n:40000
Cons ci ratio: 1.144326e-01	ci left: 2.686684e-02	ci right 3.015209e-02	k: 1139	n:40000
KS ci ratio: 4.673946e-02	ci left: 1.460434e-01	ci right 1.530576e-01	k: 5981	n:40000
APBB1IP   40000 perm   14 sec   (2863 perm/sec)   p_kst 1.495250e-01   p_cons 2.847500e-02   p_joint 3.675000e-02

Joint ci ratio: 7.902781e-02	ci left: 4.504354e-02	ci right 4.876929e-02	k: 2344	n:50000
Cons ci ratio: 1.021308e-01	ci left: 2.715643e-02	ci right 3.009863e-02	k: 1430	n:50000
KS ci ratio: 4.192219e-02	ci left: 1.457108e-01	ci right 1.519700e-01	k: 7441	n:50000
APBB1IP   50000 perm   17 sec   (2987 perm/sec)   p_kst 1.488200e-01   p_cons 2.860000e-02   p_joint 4.688000e-02

Joint ci ratio: 7.241270e-02	ci left: 4.487793e-02	ci right 4.826610e-02	k: 2793	n:60000
Cons ci ratio: 9.025130e-02	ci left: 2.910588e-02	ci right 3.187311e-02	k: 1828	n:60000
KS ci ratio: 3.832608e-02	ci left: 1.456138e-01	ci right 1.513202e-01	k: 8907	n:60000
APBB1IP   60000 perm   20 sec   (3062 perm/sec)   p_kst 1.484500e-01   p_cons 3.046667e-02   p_joint 4.655000e-02

Outputting figure to mutsig2_images.part000000000009/APBB1IP.5_2053_60000_0.14845_0.030467_0.04655.png
                gene_name: APBB1IP
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 30 percent done.
APCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
APCS   10000 perm   4 sec   (2710 perm/sec)   p_kst 3.900000e-03   p_cons 9.403000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.694827e-01	ci left: 2.383866e-02	ci right 2.830057e-02	k: 520	n:20000
Cons ci ratio: 6.566389e-03	ci left: 9.437018e-01	ci right 9.499675e-01	k: 18938	n:20000
KS ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
APCS   20000 perm   9 sec   (2312 perm/sec)   p_kst 3.100000e-03   p_cons 9.469000e-01   p_joint 2.600000e-02

Joint ci ratio: 1.576201e-01	ci left: 1.860592e-02	ci right 2.182127e-02	k: 605	n:30000
Cons ci ratio: 5.351889e-03	ci left: 9.444728e-01	ci right 9.495736e-01	k: 28412	n:30000
KS ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
APCS   30000 perm   14 sec   (2168 perm/sec)   p_kst 2.866667e-03   p_cons 9.470667e-01   p_joint 2.016667e-02

Joint ci ratio: 2.297509e-01	ci left: 6.394890e-03	ci right 8.077838e-03	k: 288	n:40000
Cons ci ratio: 4.827436e-03	ci left: 9.405049e-01	ci right 9.450806e-01	k: 37713	n:40000
KS ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
APCS   40000 perm   19 sec   (2107 perm/sec)   p_kst 2.700000e-03   p_cons 9.428250e-01   p_joint 7.200000e-03

Joint ci ratio: 1.129070e-01	ci left: 2.220936e-02	ci right 2.488635e-02	k: 1176	n:50000
Cons ci ratio: 4.289751e-03	ci left: 9.414607e-01	ci right 9.455276e-01	k: 47176	n:50000
KS ci ratio: 3.065342e-01	ci left: 2.760914e-03	ci right 3.778109e-03	k: 162	n:50000
APCS   50000 perm   25 sec   (2031 perm/sec)   p_kst 3.240000e-03   p_cons 9.435200e-01   p_joint 2.352000e-02

Joint ci ratio: 1.079186e-01	ci left: 2.035428e-02	ci right 2.269232e-02	k: 1290	n:60000
Cons ci ratio: 3.910510e-03	ci left: 9.417919e-01	ci right 9.454984e-01	k: 56620	n:60000
KS ci ratio: 2.767212e-01	ci left: 2.872454e-03	ci right 3.809937e-03	k: 199	n:60000
APCS   60000 perm   30 sec   (2000 perm/sec)   p_kst 3.316667e-03   p_cons 9.436667e-01   p_joint 2.150000e-02

Joint ci ratio: 9.740374e-02	ci left: 2.151167e-02	ci right 2.372814e-02	k: 1582	n:70000
Cons ci ratio: 3.619721e-03	ci left: 9.419524e-01	ci right 9.453822e-01	k: 66058	n:70000
KS ci ratio: 2.586150e-01	ci left: 2.848612e-03	ci right 3.707665e-03	k: 228	n:70000
APCS   70000 perm   36 sec   (1928 perm/sec)   p_kst 3.257143e-03   p_cons 9.436857e-01   p_joint 2.260000e-02

Joint ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
Cons ci ratio: 3.402927e-03	ci left: 9.415230e-01	ci right 9.447447e-01	k: 75452	n:80000
KS ci ratio: 2.431808e-01	ci left: 2.843974e-03	ci right 3.642723e-03	k: 258	n:80000
APCS   80000 perm   43 sec   (1880 perm/sec)   p_kst 3.225000e-03   p_cons 9.431500e-01   p_joint 1.206250e-02

Joint ci ratio: 1.245355e-01	ci left: 1.021035e-02	ci right 1.157701e-02	k: 979	n:90000
Cons ci ratio: 3.220062e-03	ci left: 9.412179e-01	ci right 9.442645e-01	k: 84848	n:90000
KS ci ratio: 2.290269e-01	ci left: 2.872975e-03	ci right 3.626272e-03	k: 291	n:90000
APCS   90000 perm   49 sec   (1846 perm/sec)   p_kst 3.233333e-03   p_cons 9.427556e-01   p_joint 1.087778e-02

Joint ci ratio: 1.193637e-01	ci left: 1.003272e-02	ci right 1.131590e-02	k: 1066	n:100000
Cons ci ratio: 3.053822e-03	ci left: 9.413327e-01	ci right 9.442216e-01	k: 94279	n:100000
KS ci ratio: 2.138124e-01	ci left: 2.991874e-03	ci right 3.717404e-03	k: 334	n:100000
APCS   100000 perm   55 sec   (1810 perm/sec)   p_kst 3.340000e-03   p_cons 9.427900e-01   p_joint 1.066000e-02

Joint ci ratio: 1.032415e-01	ci left: 1.226805e-02	ci right 1.361236e-02	k: 1422	n:110000
Cons ci ratio: 2.920729e-03	ci left: 9.410621e-01	ci right 9.438236e-01	k: 103670	n:110000
KS ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
APCS   110000 perm   62 sec   (1777 perm/sec)   p_kst 3.318182e-03   p_cons 9.424545e-01   p_joint 1.292727e-02

Joint ci ratio: 1.011266e-01	ci left: 1.174089e-02	ci right 1.299951e-02	k: 1483	n:120000
Cons ci ratio: 2.800782e-03	ci left: 9.409490e-01	ci right 9.435963e-01	k: 113074	n:120000
KS ci ratio: 1.966613e-01	ci left: 2.975477e-03	ci right 3.632223e-03	k: 395	n:120000
APCS   120000 perm   69 sec   (1746 perm/sec)   p_kst 3.291667e-03   p_cons 9.422833e-01   p_joint 1.235833e-02

Joint ci ratio: 1.024754e-01	ci left: 1.056004e-02	ci right 1.170807e-02	k: 1446	n:130000
Cons ci ratio: 2.814294e-03	ci left: 9.358754e-01	ci right 9.385205e-01	k: 121837	n:130000
KS ci ratio: 1.863491e-01	ci left: 3.076176e-03	ci right 3.715522e-03	k: 440	n:130000
APCS   130000 perm   76 sec   (1711 perm/sec)   p_kst 3.384615e-03   p_cons 9.372077e-01   p_joint 1.112308e-02

Joint ci ratio: 9.126129e-02	ci left: 1.241318e-02	ci right 1.360712e-02	k: 1820	n:140000
Cons ci ratio: 2.718502e-03	ci left: 9.356353e-01	ci right 9.381894e-01	k: 131169	n:140000
KS ci ratio: 1.795559e-01	ci left: 3.088188e-03	ci right 3.704091e-03	k: 474	n:140000
APCS   140000 perm   82 sec   (1699 perm/sec)   p_kst 3.385714e-03   p_cons 9.369214e-01   p_joint 1.300000e-02

Joint ci ratio: 8.441183e-02	ci left: 1.357469e-02	ci right 1.477753e-02	k: 2125	n:150000
Cons ci ratio: 2.621456e-03	ci left: 9.358999e-01	ci right 9.383631e-01	k: 140571	n:150000
KS ci ratio: 1.714392e-01	ci left: 3.175523e-03	ci right 3.777255e-03	k: 520	n:150000
APCS   150000 perm   89 sec   (1681 perm/sec)   p_kst 3.466667e-03   p_cons 9.371400e-01   p_joint 1.416667e-02

Joint ci ratio: 8.318978e-02	ci left: 1.311776e-02	ci right 1.426247e-02	k: 2189	n:160000
Cons ci ratio: 2.538800e-03	ci left: 9.359119e-01	ci right 9.382972e-01	k: 149938	n:160000
KS ci ratio: 1.656567e-01	ci left: 3.198553e-03	ci right 3.782167e-03	k: 557	n:160000
APCS   160000 perm   97 sec   (1651 perm/sec)   p_kst 3.481250e-03   p_cons 9.371125e-01   p_joint 1.368125e-02

Joint ci ratio: 7.774231e-02	ci left: 1.416210e-02	ci right 1.531336e-02	k: 2504	n:170000
Cons ci ratio: 2.458826e-03	ci left: 9.361491e-01	ci right 9.384595e-01	k: 159343	n:170000
KS ci ratio: 1.626315e-01	ci left: 3.128848e-03	ci right 3.688298e-03	k: 578	n:170000
APCS   170000 perm   105 sec   (1626 perm/sec)   p_kst 3.400000e-03   p_cons 9.373118e-01   p_joint 1.472941e-02

Joint ci ratio: 7.674043e-02	ci left: 1.374023e-02	ci right 1.484216e-02	k: 2571	n:180000
Cons ci ratio: 2.485389e-03	ci left: 9.313592e-01	ci right 9.336824e-01	k: 167855	n:180000
KS ci ratio: 1.584466e-01	ci left: 3.120326e-03	ci right 3.662530e-03	k: 609	n:180000
APCS   180000 perm   113 sec   (1593 perm/sec)   p_kst 3.383333e-03   p_cons 9.325278e-01   p_joint 1.428333e-02

Joint ci ratio: 7.473401e-02	ci left: 1.373995e-02	ci right 1.481179e-02	k: 2711	n:190000
Cons ci ratio: 2.419124e-03	ci left: 9.313892e-01	ci right 9.336502e-01	k: 177180	n:190000
KS ci ratio: 1.542072e-01	ci left: 3.128047e-03	ci right 3.655705e-03	k: 643	n:190000
APCS   190000 perm   121 sec   (1568 perm/sec)   p_kst 3.384211e-03   p_cons 9.325263e-01   p_joint 1.426842e-02

Joint ci ratio: 7.542641e-02	ci left: 1.282214e-02	ci right 1.383204e-02	k: 2664	n:200000
Cons ci ratio: 2.356955e-03	ci left: 9.314672e-01	ci right 9.336702e-01	k: 186515	n:200000
KS ci ratio: 1.510755e-01	ci left: 3.101485e-03	ci right 3.613077e-03	k: 670	n:200000
APCS   200000 perm   130 sec   (1542 perm/sec)   p_kst 3.350000e-03   p_cons 9.325750e-01   p_joint 1.332000e-02

Joint ci ratio: 7.449389e-02	ci left: 1.252923e-02	ci right 1.350333e-02	k: 2732	n:210000
Cons ci ratio: 2.300825e-03	ci left: 9.314570e-01	ci right 9.336073e-01	k: 195833	n:210000
KS ci ratio: 1.480207e-01	ci left: 3.082137e-03	ci right 3.579348e-03	k: 698	n:210000
APCS   210000 perm   138 sec   (1521 perm/sec)   p_kst 3.323810e-03   p_cons 9.325381e-01   p_joint 1.300952e-02

Joint ci ratio: 7.370131e-02	ci left: 1.222732e-02	ci right 1.316740e-02	k: 2792	n:220000
Cons ci ratio: 2.249821e-03	ci left: 9.313750e-01	ci right 9.334772e-01	k: 205135	n:220000
KS ci ratio: 1.448445e-01	ci left: 3.077786e-03	ci right 3.562719e-03	k: 729	n:220000
APCS   220000 perm   147 sec   (1498 perm/sec)   p_kst 3.313636e-03   p_cons 9.324318e-01   p_joint 1.269091e-02

Joint ci ratio: 7.349583e-02	ci left: 1.176815e-02	ci right 1.267030e-02	k: 2809	n:230000
Cons ci ratio: 2.199782e-03	ci left: 9.314320e-01	ci right 9.334875e-01	k: 214467	n:230000
KS ci ratio: 1.427135e-01	ci left: 3.036176e-03	ci right 3.506915e-03	k: 751	n:230000
APCS   230000 perm   156 sec   (1479 perm/sec)   p_kst 3.265217e-03   p_cons 9.324652e-01   p_joint 1.221304e-02

Joint ci ratio: 7.410405e-02	ci left: 1.109772e-02	ci right 1.195581e-02	k: 2765	n:240000
Cons ci ratio: 2.154650e-03	ci left: 9.313841e-01	ci right 9.333971e-01	k: 223775	n:240000
KS ci ratio: 1.388850e-01	ci left: 3.078509e-03	ci right 3.541948e-03	k: 793	n:240000
APCS   240000 perm   164 sec   (1459 perm/sec)   p_kst 3.304167e-03   p_cons 9.323958e-01   p_joint 1.152083e-02

Joint ci ratio: 7.547102e-02	ci left: 1.027290e-02	ci right 1.108251e-02	k: 2668	n:250000
Cons ci ratio: 2.109437e-03	ci left: 9.315055e-01	ci right 9.334765e-01	k: 233124	n:250000
KS ci ratio: 1.365005e-01	ci left: 3.063509e-03	ci right 3.516128e-03	k: 821	n:250000
APCS   250000 perm   174 sec   (1440 perm/sec)   p_kst 3.284000e-03   p_cons 9.324960e-01   p_joint 1.067200e-02

Joint ci ratio: 7.001846e-02	ci left: 1.149428e-02	ci right 1.233204e-02	k: 3096	n:260000
Cons ci ratio: 2.070049e-03	ci left: 9.314282e-01	ci right 9.333621e-01	k: 242424	n:260000
KS ci ratio: 1.332165e-01	ci left: 3.098057e-03	ci right 3.543897e-03	k: 862	n:260000
APCS   260000 perm   183 sec   (1422 perm/sec)   p_kst 3.315385e-03   p_cons 9.324000e-01   p_joint 1.190769e-02

Joint ci ratio: 6.889537e-02	ci left: 1.143977e-02	ci right 1.225965e-02	k: 3198	n:270000
Cons ci ratio: 2.031411e-03	ci left: 9.314428e-01	ci right 9.333405e-01	k: 251747	n:270000
KS ci ratio: 1.301586e-01	ci left: 3.130167e-03	ci right 3.569489e-03	k: 903	n:270000
APCS   270000 perm   192 sec   (1403 perm/sec)   p_kst 3.344444e-03   p_cons 9.323963e-01   p_joint 1.184444e-02

Joint ci ratio: 6.917308e-02	ci left: 1.094687e-02	ci right 1.173472e-02	k: 3174	n:280000
Cons ci ratio: 1.993333e-03	ci left: 9.315537e-01	ci right 9.334159e-01	k: 261097	n:280000
KS ci ratio: 1.275732e-01	ci left: 3.146260e-03	ci right 3.578406e-03	k: 940	n:280000
APCS   280000 perm   202 sec   (1384 perm/sec)   p_kst 3.357143e-03   p_cons 9.324893e-01   p_joint 1.133571e-02

Joint ci ratio: 6.587798e-02	ci left: 1.166453e-02	ci right 1.246251e-02	k: 3497	n:290000
Cons ci ratio: 1.959729e-03	ci left: 9.315010e-01	ci right 9.333317e-01	k: 270402	n:290000
KS ci ratio: 1.249439e-01	ci left: 3.171346e-03	ci right 3.597295e-03	k: 980	n:290000
APCS   290000 perm   212 sec   (1367 perm/sec)   p_kst 3.379310e-03   p_cons 9.324207e-01   p_joint 1.205862e-02

Joint ci ratio: 6.671641e-02	ci left: 1.099695e-02	ci right 1.175920e-02	k: 3412	n:300000
Cons ci ratio: 1.928888e-03	ci left: 9.313784e-01	ci right 9.331799e-01	k: 279685	n:300000
KS ci ratio: 1.228941e-01	ci left: 3.172224e-03	ci right 3.590793e-03	k: 1013	n:300000
APCS   300000 perm   222 sec   (1352 perm/sec)   p_kst 3.376667e-03   p_cons 9.322833e-01   p_joint 1.137333e-02

Joint ci ratio: 6.608569e-02	ci left: 1.085155e-02	ci right 1.159634e-02	k: 3478	n:310000
Cons ci ratio: 1.896397e-03	ci left: 9.314684e-01	ci right 9.332397e-01	k: 289031	n:310000
KS ci ratio: 1.201956e-01	ci left: 3.213775e-03	ci right 3.627852e-03	k: 1059	n:310000
APCS   310000 perm   232 sec   (1336 perm/sec)   p_kst 3.416129e-03   p_cons 9.323581e-01   p_joint 1.121935e-02

Joint ci ratio: 6.518480e-02	ci left: 1.081058e-02	ci right 1.154206e-02	k: 3575	n:320000
Cons ci ratio: 1.867250e-03	ci left: 9.314335e-01	ci right 9.331774e-01	k: 298339	n:320000
KS ci ratio: 1.186401e-01	ci left: 3.198229e-03	ci right 3.604596e-03	k: 1087	n:320000
APCS   320000 perm   242 sec   (1321 perm/sec)   p_kst 3.396875e-03   p_cons 9.323094e-01   p_joint 1.117187e-02

Joint ci ratio: 6.502156e-02	ci left: 1.053958e-02	ci right 1.125087e-02	k: 3594	n:330000
Cons ci ratio: 1.839627e-03	ci left: 9.313857e-01	ci right 9.331037e-01	k: 307642	n:330000
KS ci ratio: 1.164647e-01	ci left: 3.221904e-03	ci right 3.623258e-03	k: 1128	n:330000
APCS   330000 perm   253 sec   (1304 perm/sec)   p_kst 3.418182e-03   p_cons 9.322485e-01   p_joint 1.089091e-02

Joint ci ratio: 6.405770e-02	ci left: 1.054501e-02	ci right 1.124572e-02	k: 3703	n:340000
Cons ci ratio: 1.811379e-03	ci left: 9.314681e-01	ci right 9.331598e-01	k: 316988	n:340000
KS ci ratio: 1.144047e-01	ci left: 3.244251e-03	ci right 3.640757e-03	k: 1169	n:340000
APCS   340000 perm   264 sec   (1289 perm/sec)   p_kst 3.438235e-03   p_cons 9.323176e-01   p_joint 1.089118e-02

Joint ci ratio: 6.455394e-02	ci left: 1.008903e-02	ci right 1.076483e-02	k: 3648	n:350000
Cons ci ratio: 1.784512e-03	ci left: 9.315374e-01	ci right 9.332040e-01	k: 326331	n:350000
KS ci ratio: 1.128249e-01	ci left: 3.243164e-03	ci right 3.633700e-03	k: 1202	n:350000
APCS   350000 perm   274 sec   (1275 perm/sec)   p_kst 3.434286e-03   p_cons 9.323743e-01   p_joint 1.042286e-02

Joint ci ratio: 6.141825e-02	ci left: 1.084511e-02	ci right 1.153502e-02	k: 4027	n:360000
Cons ci ratio: 1.759077e-03	ci left: 9.315834e-01	ci right 9.332263e-01	k: 335667	n:360000
KS ci ratio: 1.111285e-01	ci left: 3.252976e-03	ci right 3.638418e-03	k: 1239	n:360000
APCS   360000 perm   281 sec   (1283 perm/sec)   p_kst 3.441667e-03   p_cons 9.324083e-01   p_joint 1.118611e-02

Joint ci ratio: 6.066332e-02	ci left: 1.082080e-02	ci right 1.150040e-02	k: 4128	n:370000
Cons ci ratio: 1.734252e-03	ci left: 9.316597e-01	ci right 9.332795e-01	k: 345015	n:370000
KS ci ratio: 1.094204e-01	ci left: 3.267558e-03	ci right 3.648392e-03	k: 1278	n:370000
APCS   370000 perm   287 sec   (1291 perm/sec)   p_kst 3.454054e-03   p_cons 9.324730e-01   p_joint 1.115676e-02

Joint ci ratio: 6.048747e-02	ci left: 1.060080e-02	ci right 1.126459e-02	k: 4153	n:380000
Cons ci ratio: 1.711771e-03	ci left: 9.316342e-01	ci right 9.332329e-01	k: 354326	n:380000
KS ci ratio: 1.083261e-01	ci left: 3.248125e-03	ci right 3.622668e-03	k: 1304	n:380000
APCS   380000 perm   292 sec   (1300 perm/sec)   p_kst 3.431579e-03   p_cons 9.324368e-01   p_joint 1.092895e-02

Joint ci ratio: 5.808467e-02	ci left: 1.120817e-02	ci right 1.188117e-02	k: 4501	n:390000
Cons ci ratio: 1.691310e-03	ci left: 9.315225e-01	ci right 9.331018e-01	k: 363603	n:390000
KS ci ratio: 1.072236e-01	ci left: 3.232203e-03	ci right 3.600877e-03	k: 1331	n:390000
APCS   390000 perm   299 sec   (1306 perm/sec)   p_kst 3.412821e-03   p_cons 9.323154e-01   p_joint 1.154103e-02

Joint ci ratio: 5.784030e-02	ci left: 1.102402e-02	ci right 1.168309e-02	k: 4540	n:400000
Cons ci ratio: 1.671693e-03	ci left: 9.314065e-01	ci right 9.329673e-01	k: 372876	n:400000
KS ci ratio: 1.059197e-01	ci left: 3.231699e-03	ci right 3.595553e-03	k: 1364	n:400000
APCS   400000 perm   305 sec   (1313 perm/sec)   p_kst 3.410000e-03   p_cons 9.321900e-01   p_joint 1.135000e-02

Joint ci ratio: 5.739008e-02	ci left: 1.092820e-02	ci right 1.157629e-02	k: 4612	n:410000
Cons ci ratio: 1.652164e-03	ci left: 9.313404e-01	ci right 9.328828e-01	k: 382167	n:410000
KS ci ratio: 1.045498e-01	ci left: 3.238371e-03	ci right 3.597971e-03	k: 1400	n:410000
APCS   410000 perm   317 sec   (1295 perm/sec)   p_kst 3.414634e-03   p_cons 9.321146e-01   p_joint 1.124878e-02

Joint ci ratio: 5.827267e-02	ci left: 1.034879e-02	ci right 1.097227e-02	k: 4476	n:420000
Cons ci ratio: 1.633947e-03	ci left: 9.312273e-01	ci right 9.327525e-01	k: 391437	n:420000
KS ci ratio: 1.030878e-01	ci left: 3.254034e-03	ci right 3.610014e-03	k: 1440	n:420000
APCS   420000 perm   329 sec   (1276 perm/sec)   p_kst 3.428571e-03   p_cons 9.319929e-01   p_joint 1.065714e-02

Joint ci ratio: 5.755680e-02	ci left: 1.036482e-02	ci right 1.098134e-02	k: 4588	n:430000
Cons ci ratio: 1.614300e-03	ci left: 9.312785e-01	ci right 9.327854e-01	k: 400775	n:430000
KS ci ratio: 1.019969e-01	ci left: 3.248602e-03	ci right 3.600002e-03	k: 1471	n:430000
APCS   430000 perm   342 sec   (1258 perm/sec)   p_kst 3.420930e-03   p_cons 9.320349e-01   p_joint 1.066977e-02

Joint ci ratio: 5.511008e-02	ci left: 1.105478e-02	ci right 1.168350e-02	k: 5001	n:440000
Cons ci ratio: 1.595774e-03	ci left: 9.312933e-01	ci right 9.327828e-01	k: 410098	n:440000
KS ci ratio: 1.007719e-01	ci left: 3.254514e-03	ci right 3.602075e-03	k: 1507	n:440000
APCS   440000 perm   354 sec   (1242 perm/sec)   p_kst 3.425000e-03   p_cons 9.320409e-01   p_joint 1.136591e-02

Joint ci ratio: 5.370699e-02	ci left: 1.138566e-02	ci right 1.201620e-02	k: 5264	n:450000
Cons ci ratio: 1.577816e-03	ci left: 9.313119e-01	ci right 9.327847e-01	k: 419423	n:450000
KS ci ratio: 9.949303e-02	ci left: 3.266689e-03	ci right 3.610865e-03	k: 1546	n:450000
APCS   450000 perm   367 sec   (1228 perm/sec)   p_kst 3.435556e-03   p_cons 9.320511e-01   p_joint 1.169778e-02

Outputting figure to mutsig2_images.part000000000009/APCS.5_680_450000_0.0034356_0.93205_0.011698.png
                gene_name: APCS
               theta_stop: 0.099 
                    nperm: 450000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0033 
       ci_ks_bounds_right: 0.0036 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 32 percent done.
APP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.416207e-02	ci left: 4.308381e-01	ci right 4.503965e-01	k: 4406	n:10000
Cons ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
KS ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
APP   10000 perm   3 sec   (2949 perm/sec)   p_kst 7.771000e-01   p_cons 6.640000e-02   p_joint 4.406000e-01

Joint ci ratio: 2.909486e-02	ci left: 4.688076e-01	ci right 4.826995e-01	k: 9515	n:20000
Cons ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
KS ci ratio: 1.510003e-02	ci left: 7.652637e-01	ci right 7.769573e-01	k: 15423	n:20000
APP   20000 perm   9 sec   (2155 perm/sec)   p_kst 7.711500e-01   p_cons 6.665000e-02   p_joint 4.757500e-01

Joint ci ratio: 3.133908e-02	ci left: 3.373613e-01	ci right 3.481358e-01	k: 10282	n:30000
Cons ci ratio: 8.418544e-02	ci left: 6.455561e-02	ci right 7.026185e-02	k: 2021	n:30000
KS ci ratio: 1.198578e-02	ci left: 7.762428e-01	ci right 7.856361e-01	k: 23429	n:30000
APP   30000 perm   15 sec   (1939 perm/sec)   p_kst 7.809667e-01   p_cons 6.736667e-02   p_joint 3.427333e-01

Outputting figure to mutsig2_images.part000000000009/APP.5_2385_30000_0.78097_0.067367_0.34273.png
                gene_name: APP
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 34 percent done.
AP2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
Cons ci ratio: 3.241811e-02	ci left: 5.840980e-01	ci right 6.034473e-01	k: 5938	n:10000
KS ci ratio: 3.437065e-02	ci left: 5.555163e-01	ci right 5.750457e-01	k: 5653	n:10000
AP2A2   10000 perm   5 sec   (2045 perm/sec)   p_kst 5.653000e-01   p_cons 5.938000e-01   p_joint 8.952000e-01

Outputting figure to mutsig2_images.part000000000009/AP2A2.4_2908_10000_0.5653_0.5938_0.8952.png
                gene_name: AP2A2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 36 percent done.
AP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
Cons ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
AP4B1   10000 perm   5 sec   (2131 perm/sec)   p_kst 3.855000e-01   p_cons 5.545000e-01   p_joint 5.073000e-01

Outputting figure to mutsig2_images.part000000000009/AP4B1.4_2260_10000_0.3855_0.5545_0.5073.png
                gene_name: AP4B1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
APBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
Cons ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
KS ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
APBA1   10000 perm   5 sec   (2133 perm/sec)   p_kst 1.807000e-01   p_cons 8.598000e-01   p_joint 2.987000e-01

Outputting figure to mutsig2_images.part000000000009/APBA1.4_2562_10000_0.1807_0.8598_0.2987.png
                gene_name: APBA1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 40 percent done.
APOBEC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
APOBEC3B   10000 perm   4 sec   (2400 perm/sec)   p_kst 8.115000e-01   p_cons 1.990000e-01   p_joint 5.463000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC3B.4_1181_10000_0.8115_0.199_0.5463.png
                gene_name: APOBEC3B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 43 percent done.
APPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
Cons ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
KS ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
APPL1   10000 perm   4 sec   (2756 perm/sec)   p_kst 8.184000e-01   p_cons 4.405000e-01   p_joint 7.805000e-01

Outputting figure to mutsig2_images.part000000000009/APPL1.4_2218_10000_0.8184_0.4405_0.7805.png
                gene_name: APPL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 45 percent done.
APBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
Cons ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
KS ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
APBB1   10000 perm   4 sec   (2541 perm/sec)   p_kst 7.055000e-01   p_cons 4.909000e-01   p_joint 6.603000e-01

Outputting figure to mutsig2_images.part000000000009/APBB1.3_2185_10000_0.7055_0.4909_0.6603.png
                gene_name: APBB1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 47 percent done.
APBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
Cons ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
KS ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
APBB3   10000 perm   3 sec   (3250 perm/sec)   p_kst 2.078000e-01   p_cons 8.693000e-01   p_joint 3.794000e-01

Outputting figure to mutsig2_images.part000000000009/APBB3.3_1530_10000_0.2078_0.8693_0.3794.png
                gene_name: APBB3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
APEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
Cons ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
KS ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
APEX2   10000 perm   4 sec   (2543 perm/sec)   p_kst 8.150000e-01   p_cons 2.731000e-01   p_joint 5.212000e-01

Outputting figure to mutsig2_images.part000000000009/APEX2.3_1581_10000_0.815_0.2731_0.5212.png
                gene_name: APEX2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 51 percent done.
APLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
Cons ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
APLP1   10000 perm   4 sec   (2455 perm/sec)   p_kst 3.560000e-01   p_cons 3.844000e-01   p_joint 3.203000e-01

Outputting figure to mutsig2_images.part000000000009/APLP1.3_2024_10000_0.356_0.3844_0.3203.png
                gene_name: APLP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 53 percent done.
APOA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
Cons ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
KS ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
APOA4   10000 perm   4 sec   (2525 perm/sec)   p_kst 7.332000e-01   p_cons 1.123000e-01   p_joint 3.278000e-01

Joint ci ratio: 4.092738e-02	ci left: 3.079679e-01	ci right 3.208861e-01	k: 6288	n:20000
Cons ci ratio: 7.599955e-02	ci left: 1.129205e-01	ci right 1.218911e-01	k: 2347	n:20000
KS ci ratio: 1.664134e-02	ci left: 7.288750e-01	ci right 7.411566e-01	k: 14701	n:20000
APOA4   20000 perm   9 sec   (2260 perm/sec)   p_kst 7.350500e-01   p_cons 1.173500e-01   p_joint 3.144000e-01

Outputting figure to mutsig2_images.part000000000009/APOA4.3_1203_20000_0.73505_0.11735_0.3144.png
                gene_name: APOA4
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
APOA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
KS ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
APOA5   10000 perm   3 sec   (3090 perm/sec)   p_kst 8.113000e-01   p_cons 1.798000e-01   p_joint 4.369000e-01

Outputting figure to mutsig2_images.part000000000009/APOA5.3_1113_10000_0.8113_0.1798_0.4369.png
                gene_name: APOA5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
APOBEC3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
Cons ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
APOBEC3G   10000 perm   4 sec   (2727 perm/sec)   p_kst 1.781000e-01   p_cons 9.827000e-01   p_joint 3.045000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC3G.3_1187_10000_0.1781_0.9827_0.3045.png
                gene_name: APOBEC3G
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 60 percent done.
APOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
APOC3   10000 perm   4 sec   (2748 perm/sec)   p_kst 2.326000e-01   p_cons 3.950000e-02   p_joint 7.900000e-02

Joint ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
Cons ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
KS ci ratio: 4.956291e-02	ci left: 2.323097e-01	ci right 2.441665e-01	k: 4764	n:20000
APOC3   20000 perm   7 sec   (2893 perm/sec)   p_kst 2.382000e-01   p_cons 3.515000e-02   p_joint 4.480000e-02

Joint ci ratio: 9.803211e-02	ci left: 4.811419e-02	ci right 5.310663e-02	k: 1517	n:30000
Cons ci ratio: 1.181960e-01	ci left: 3.327262e-02	ci right 3.748464e-02	k: 1060	n:30000
KS ci ratio: 4.054067e-02	ci left: 2.327596e-01	ci right 2.424246e-01	k: 7127	n:30000
APOC3   30000 perm   9 sec   (3233 perm/sec)   p_kst 2.375667e-01   p_cons 3.533333e-02   p_joint 5.056667e-02

Joint ci ratio: 9.207318e-02	ci left: 4.135059e-02	ci right 4.536604e-02	k: 1733	n:40000
Cons ci ratio: 1.038023e-01	ci left: 3.263531e-02	ci right 3.623269e-02	k: 1376	n:40000
KS ci ratio: 3.513840e-02	ci left: 2.331127e-01	ci right 2.414754e-01	k: 9491	n:40000
APOC3   40000 perm   12 sec   (3398 perm/sec)   p_kst 2.372750e-01   p_cons 3.440000e-02   p_joint 4.332500e-02

Joint ci ratio: 7.075310e-02	ci left: 5.578989e-02	ci right 5.990163e-02	k: 2891	n:50000
Cons ci ratio: 9.273926e-02	ci left: 3.289778e-02	ci right 3.611656e-02	k: 1724	n:50000
KS ci ratio: 3.134392e-02	ci left: 2.345311e-01	ci right 2.420193e-01	k: 11913	n:50000
APOC3   50000 perm   14 sec   (3495 perm/sec)   p_kst 2.382600e-01   p_cons 3.448000e-02   p_joint 5.782000e-02

Outputting figure to mutsig2_images.part000000000009/APOC3.3_312_50000_0.23826_0.03448_0.05782.png
                gene_name: APOC3
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 62 percent done.
AQP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
AQP11   10000 perm   4 sec   (2769 perm/sec)   p_kst 2.833000e-01   p_cons 1.279000e-01   p_joint 1.919000e-01

Joint ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
Cons ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
KS ci ratio: 4.371043e-02	ci left: 2.804887e-01	ci right 2.930733e-01	k: 5735	n:20000
AQP11   20000 perm   8 sec   (2407 perm/sec)   p_kst 2.867500e-01   p_cons 1.264000e-01   p_joint 1.217500e-01

Outputting figure to mutsig2_images.part000000000009/AQP11.3_828_20000_0.28675_0.1264_0.12175.png
                gene_name: AQP11
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
AP1M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
AP1M1   10000 perm   3 sec   (2977 perm/sec)   p_kst 9.860000e-02   p_cons 5.609000e-01   p_joint 5.115000e-01

Joint ci ratio: 2.944121e-02	ci left: 4.629129e-01	ci right 4.767959e-01	k: 9397	n:20000
Cons ci ratio: 2.456586e-02	ci left: 5.531373e-01	ci right 5.669452e-01	k: 11201	n:20000
KS ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
AP1M1   20000 perm   9 sec   (2344 perm/sec)   p_kst 9.985000e-02   p_cons 5.600500e-01   p_joint 4.698500e-01

Outputting figure to mutsig2_images.part000000000009/AP1M1.2_1360_20000_0.09985_0.56005_0.46985.png
                gene_name: AP1M1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 66 percent done.
AP1M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.009327e-02	ci left: 3.701742e-01	ci right 3.892959e-01	k: 3797	n:10000
Cons ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
KS ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
AP1M2   10000 perm   2 sec   (4061 perm/sec)   p_kst 1.766000e-01   p_cons 3.689000e-01   p_joint 3.797000e-01

Outputting figure to mutsig2_images.part000000000009/AP1M2.2_1320_10000_0.1766_0.3689_0.3797.png
                gene_name: AP1M2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 68 percent done.
AP2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
KS ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
AP2A1   10000 perm   4 sec   (2417 perm/sec)   p_kst 4.062000e-01   p_cons 2.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP2A1.2_3030_10000_0.4062_0.2863_1.png
                gene_name: AP2A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
AP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
AP2B1   10000 perm   2 sec   (4797 perm/sec)   p_kst 6.720000e-01   p_cons 7.510000e-02   p_joint 1.123000e-01

Joint ci ratio: 9.620311e-02	ci left: 7.295085e-02	ci right 8.037278e-02	k: 1532	n:20000
Cons ci ratio: 9.647600e-02	ci left: 7.255975e-02	ci right 7.996401e-02	k: 1524	n:20000
KS ci ratio: 1.953830e-02	ci left: 6.614745e-01	ci right 6.745766e-01	k: 13361	n:20000
AP2B1   20000 perm   5 sec   (4276 perm/sec)   p_kst 6.680500e-01   p_cons 7.620000e-02   p_joint 7.660000e-02

Outputting figure to mutsig2_images.part000000000009/AP2B1.2_2940_20000_0.66805_0.0762_0.0766.png
                gene_name: AP2B1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 72 percent done.
AP3M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
Cons ci ratio: 1.229247e-01	ci left: 8.659902e-02	ci right 9.803975e-02	k: 922	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
AP3M2   10000 perm   2 sec   (5314 perm/sec)   p_kst 6.623000e-01   p_cons 9.220000e-02   p_joint 4.383000e-01

Joint ci ratio: 2.784428e-02	ci left: 4.907463e-01	ci right 5.046544e-01	k: 9954	n:20000
Cons ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
KS ci ratio: 1.988954e-02	ci left: 6.534874e-01	ci right 6.666660e-01	k: 13202	n:20000
AP3M2   20000 perm   4 sec   (4824 perm/sec)   p_kst 6.601000e-01   p_cons 9.110000e-02   p_joint 4.977000e-01

Outputting figure to mutsig2_images.part000000000009/AP3M2.2_1289_20000_0.6601_0.0911_0.4977.png
                gene_name: AP3M2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 74 percent done.
AP3S2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 77 percent done.
AP4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
Cons ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
KS ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
AP4M1   10000 perm   2 sec   (5403 perm/sec)   p_kst 7.513000e-01   p_cons 1.334000e-01   p_joint 2.724000e-01

Outputting figure to mutsig2_images.part000000000009/AP4M1.2_1422_10000_0.7513_0.1334_0.2724.png
                gene_name: AP4M1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 79 percent done.
APC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
Cons ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
APC2   10000 perm   3 sec   (3253 perm/sec)   p_kst 9.500000e-02   p_cons 1.228000e-01   p_joint 2.212000e-01

Joint ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
Cons ci ratio: 7.446280e-02	ci left: 1.171500e-01	ci right 1.262603e-01	k: 2433	n:20000
KS ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
APC2   20000 perm   7 sec   (3021 perm/sec)   p_kst 9.565000e-02   p_cons 1.216500e-01   p_joint 1.028000e-01

Outputting figure to mutsig2_images.part000000000009/APC2.2_6968_20000_0.09565_0.12165_0.1028.png
                gene_name: APC2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 81 percent done.
APCDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
APCDD1   10000 perm   2 sec   (5138 perm/sec)   p_kst 7.956000e-01   p_cons 1.970000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APCDD1.2_1565_10000_0.7956_0.197_1.png
                gene_name: APCDD1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
APCDD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
Cons ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
APCDD1L   10000 perm   2 sec   (5358 perm/sec)   p_kst 7.633000e-01   p_cons 9.116000e-01   p_joint 9.831000e-01

Outputting figure to mutsig2_images.part000000000009/APCDD1L.2_1522_10000_0.7633_0.9116_0.9831.png
                gene_name: APCDD1L
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
APEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
KS ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
APEX1   10000 perm   2 sec   (5861 perm/sec)   p_kst 3.605000e-01   p_cons 2.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APEX1.2_973_10000_0.3605_0.2608_1.png
                gene_name: APEX1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
API5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
Cons ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
API5   10000 perm   2 sec   (5326 perm/sec)   p_kst 6.901000e-01   p_cons 3.197000e-01   p_joint 9.505000e-01

Outputting figure to mutsig2_images.part000000000009/API5.2_1631_10000_0.6901_0.3197_0.9505.png
                gene_name: API5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 89 percent done.
APLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
Cons ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
APLF   10000 perm   2 sec   (5362 perm/sec)   p_kst 2.754000e-01   p_cons 2.875000e-01   p_joint 5.903000e-01

Outputting figure to mutsig2_images.part000000000009/APLF.2_1576_10000_0.2754_0.2875_0.5903.png
                gene_name: APLF
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 91 percent done.
APOBEC3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
APOBEC3H   10000 perm   2 sec   (5762 perm/sec)   p_kst 2.000000e-03   p_cons 4.920000e-02   p_joint 1.000000e-03

Joint ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
Cons ci ratio: 1.195665e-01	ci left: 4.794292e-02	ci right 5.408845e-02	k: 1019	n:20000
KS ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
APOBEC3H   20000 perm   4 sec   (5076 perm/sec)   p_kst 1.800000e-03   p_cons 5.095000e-02   p_joint 1.700000e-03

Joint ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
Cons ci ratio: 9.806613e-02	ci left: 4.808163e-02	ci right 5.307253e-02	k: 1516	n:30000
KS ci ratio: 5.775196e-01	ci left: 1.094314e-03	ci right 2.006609e-03	k: 45	n:30000
APOBEC3H   30000 perm   6 sec   (4818 perm/sec)   p_kst 1.500000e-03   p_cons 5.053333e-02   p_joint 1.066667e-03

Joint ci ratio: 5.714476e-01	ci left: 8.420637e-04	ci right 1.533644e-03	k: 46	n:40000
Cons ci ratio: 8.503144e-02	ci left: 4.830080e-02	ci right 5.261476e-02	k: 2017	n:40000
KS ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
APOBEC3H   40000 perm   9 sec   (4619 perm/sec)   p_kst 1.475000e-03   p_cons 5.042500e-02   p_joint 1.150000e-03

Joint ci ratio: 6.927359e-01	ci left: 4.212976e-04	ci right 8.799261e-04	k: 31	n:50000
Cons ci ratio: 7.582537e-02	ci left: 4.881282e-02	ci right 5.267956e-02	k: 2536	n:50000
KS ci ratio: 4.463769e-01	ci left: 1.197768e-03	ci right 1.902143e-03	k: 76	n:50000
APOBEC3H   50000 perm   11 sec   (4498 perm/sec)   p_kst 1.520000e-03   p_cons 5.072000e-02   p_joint 6.200000e-04

Joint ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
Cons ci ratio: 6.916385e-02	ci left: 4.905638e-02	ci right 5.258723e-02	k: 3048	n:60000
KS ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
APOBEC3H   60000 perm   14 sec   (4425 perm/sec)   p_kst 1.616667e-03   p_cons 5.080000e-02   p_joint 6.833333e-04

Joint ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
Cons ci ratio: 6.372411e-02	ci left: 4.964908e-02	ci right 5.293110e-02	k: 3589	n:70000
KS ci ratio: 3.605584e-01	ci left: 1.382507e-03	ci right 2.002831e-03	k: 117	n:70000
APOBEC3H   70000 perm   16 sec   (4326 perm/sec)   p_kst 1.671429e-03   p_cons 5.127143e-02   p_joint 7.285714e-04

Joint ci ratio: 4.898009e-01	ci left: 6.051880e-04	ci right 1.007444e-03	k: 63	n:80000
Cons ci ratio: 5.972256e-02	ci left: 4.957184e-02	ci right 5.263582e-02	k: 4087	n:80000
KS ci ratio: 3.358493e-01	ci left: 1.415043e-03	ci right 1.997051e-03	k: 135	n:80000
APOBEC3H   80000 perm   19 sec   (4228 perm/sec)   p_kst 1.687500e-03   p_cons 5.108750e-02   p_joint 7.875000e-04

Joint ci ratio: 4.617890e-01	ci left: 6.161786e-04	ci right 9.949734e-04	k: 71	n:90000
Cons ci ratio: 5.637810e-02	ci left: 4.953875e-02	ci right 5.242361e-02	k: 4587	n:90000
KS ci ratio: 3.197981e-01	ci left: 1.400575e-03	ci right 1.943467e-03	k: 149	n:90000
APOBEC3H   90000 perm   22 sec   (4128 perm/sec)   p_kst 1.655556e-03   p_cons 5.096667e-02   p_joint 7.888889e-04

Joint ci ratio: 4.494817e-01	ci left: 5.899669e-04	ci right 9.400421e-04	k: 75	n:100000
Cons ci ratio: 5.341203e-02	ci left: 4.974324e-02	ci right 5.248287e-02	k: 5110	n:100000
KS ci ratio: 2.995120e-01	ci left: 1.454223e-03	ci right 1.975362e-03	k: 170	n:100000
APOBEC3H   100000 perm   25 sec   (4047 perm/sec)   p_kst 1.700000e-03   p_cons 5.110000e-02   p_joint 7.500000e-04

Joint ci ratio: 4.225373e-01	ci left: 6.172723e-04	ci right 9.554019e-04	k: 85	n:110000
Cons ci ratio: 5.093165e-02	ci left: 4.979704e-02	ci right 5.240851e-02	k: 5620	n:110000
KS ci ratio: 2.819189e-01	ci left: 1.507456e-03	ci right 2.010307e-03	k: 192	n:110000
APOBEC3H   110000 perm   28 sec   (3968 perm/sec)   p_kst 1.745455e-03   p_cons 5.109091e-02   p_joint 7.727273e-04

Joint ci ratio: 3.999216e-01	ci left: 6.405514e-04	ci right 9.676862e-04	k: 95	n:120000
Cons ci ratio: 4.872987e-02	ci left: 4.991847e-02	ci right 5.241995e-02	k: 6139	n:120000
KS ci ratio: 2.689877e-01	ci left: 1.529240e-03	ci right 2.012016e-03	k: 211	n:120000
APOBEC3H   120000 perm   31 sec   (3884 perm/sec)   p_kst 1.758333e-03   p_cons 5.115833e-02   p_joint 7.916667e-04

Joint ci ratio: 3.788033e-01	ci left: 6.676169e-04	ci right 9.861000e-04	k: 106	n:130000
Cons ci ratio: 4.682805e-02	ci left: 4.994720e-02	ci right 5.234979e-02	k: 6648	n:130000
KS ci ratio: 2.582474e-01	ci left: 1.540922e-03	ci right 2.004832e-03	k: 229	n:130000
APOBEC3H   130000 perm   34 sec   (3813 perm/sec)   p_kst 1.761538e-03   p_cons 5.113846e-02   p_joint 8.153846e-04

Joint ci ratio: 3.622514e-01	ci left: 6.847114e-04	ci right 9.937104e-04	k: 116	n:140000
Cons ci ratio: 4.510627e-02	ci left: 5.003000e-02	ci right 5.234578e-02	k: 7165	n:140000
KS ci ratio: 2.438227e-01	ci left: 1.618292e-03	ci right 2.074166e-03	k: 257	n:140000
APOBEC3H   140000 perm   38 sec   (3689 perm/sec)   p_kst 1.835714e-03   p_cons 5.117857e-02   p_joint 8.285714e-04

Joint ci ratio: 3.463333e-01	ci left: 7.058752e-04	ci right 1.007292e-03	k: 127	n:150000
Cons ci ratio: 4.362430e-02	ci left: 4.996461e-02	ci right 5.219945e-02	k: 7661	n:150000
KS ci ratio: 2.348872e-01	ci left: 1.635747e-03	ci right 2.077198e-03	k: 277	n:150000
APOBEC3H   150000 perm   41 sec   (3632 perm/sec)   p_kst 1.846667e-03   p_cons 5.107333e-02   p_joint 8.466667e-04

Joint ci ratio: 3.335476e-01	ci left: 7.189255e-04	ci right 1.012149e-03	k: 137	n:160000
Cons ci ratio: 4.231769e-02	ci left: 4.982186e-02	ci right 5.198195e-02	k: 8143	n:160000
KS ci ratio: 2.268672e-01	ci left: 1.651286e-03	ci right 2.079587e-03	k: 297	n:160000
APOBEC3H   160000 perm   45 sec   (3578 perm/sec)   p_kst 1.856250e-03   p_cons 5.089375e-02   p_joint 8.562500e-04

Joint ci ratio: 3.220808e-01	ci left: 7.306207e-04	ci right 1.016256e-03	k: 147	n:170000
Cons ci ratio: 4.103172e-02	ci left: 4.990651e-02	ci right 5.200295e-02	k: 8661	n:170000
KS ci ratio: 2.192712e-01	ci left: 1.670782e-03	ci right 2.087675e-03	k: 318	n:170000
APOBEC3H   170000 perm   48 sec   (3527 perm/sec)   p_kst 1.870588e-03   p_cons 5.094706e-02   p_joint 8.647059e-04

Joint ci ratio: 3.097646e-01	ci left: 7.514149e-04	ci right 1.031729e-03	k: 159	n:180000
Cons ci ratio: 3.991129e-02	ci left: 4.985056e-02	ci right 5.188615e-02	k: 9155	n:180000
KS ci ratio: 2.123904e-01	ci left: 1.688324e-03	ci right 2.094654e-03	k: 339	n:180000
APOBEC3H   180000 perm   52 sec   (3473 perm/sec)   p_kst 1.883333e-03   p_cons 5.086111e-02   p_joint 8.833333e-04

Joint ci ratio: 3.014035e-01	ci left: 7.556043e-04	ci right 1.028416e-03	k: 168	n:190000
Cons ci ratio: 3.891614e-02	ci left: 4.970735e-02	ci right 5.168534e-02	k: 9631	n:190000
KS ci ratio: 2.069826e-01	ci left: 1.689228e-03	ci right 2.084113e-03	k: 357	n:190000
APOBEC3H   190000 perm   56 sec   (3420 perm/sec)   p_kst 1.878947e-03   p_cons 5.068947e-02   p_joint 8.842105e-04

Joint ci ratio: 2.920473e-01	ci left: 7.687320e-04	ci right 1.036075e-03	k: 179	n:200000
Cons ci ratio: 3.795433e-02	ci left: 4.967317e-02	ci right 5.159988e-02	k: 10126	n:200000
KS ci ratio: 2.019679e-01	ci left: 1.690159e-03	ci right 2.074509e-03	k: 375	n:200000
APOBEC3H   200000 perm   59 sec   (3375 perm/sec)   p_kst 1.875000e-03   p_cons 5.063000e-02   p_joint 8.950000e-04

Joint ci ratio: 2.842573e-01	ci left: 7.763045e-04	ci right 1.037788e-03	k: 189	n:210000
Cons ci ratio: 3.701462e-02	ci left: 4.976080e-02	ci right 5.164210e-02	k: 10646	n:210000
KS ci ratio: 1.955680e-01	ci left: 1.722802e-03	ci right 2.100683e-03	k: 400	n:210000
APOBEC3H   210000 perm   63 sec   (3327 perm/sec)   p_kst 1.904762e-03   p_cons 5.069524e-02   p_joint 9.000000e-04

Joint ci ratio: 2.805920e-01	ci left: 7.621348e-04	ci right 1.014950e-03	k: 194	n:220000
Cons ci ratio: 3.612097e-02	ci left: 4.989508e-02	ci right 5.173496e-02	k: 11178	n:220000
KS ci ratio: 1.924757e-01	ci left: 1.700711e-03	ci right 2.067158e-03	k: 413	n:220000
APOBEC3H   220000 perm   67 sec   (3278 perm/sec)   p_kst 1.877273e-03   p_cons 5.080909e-02   p_joint 8.818182e-04

Joint ci ratio: 2.750080e-01	ci left: 7.613584e-04	ci right 1.008021e-03	k: 202	n:230000
Cons ci ratio: 3.535592e-02	ci left: 4.983709e-02	ci right 5.163512e-02	k: 11668	n:230000
KS ci ratio: 1.893036e-01	ci left: 1.684727e-03	ci right 2.041058e-03	k: 427	n:230000
APOBEC3H   230000 perm   71 sec   (3233 perm/sec)   p_kst 1.856522e-03   p_cons 5.073043e-02   p_joint 8.782609e-04

Joint ci ratio: 2.703868e-01	ci left: 7.568076e-04	ci right 9.971767e-04	k: 209	n:240000
Cons ci ratio: 3.457615e-02	ci left: 4.995375e-02	ci right 5.171545e-02	k: 12199	n:240000
KS ci ratio: 1.858624e-01	ci left: 1.678065e-03	ci right 2.025808e-03	k: 443	n:240000
APOBEC3H   240000 perm   75 sec   (3189 perm/sec)   p_kst 1.845833e-03   p_cons 5.082917e-02   p_joint 8.708333e-04

Joint ci ratio: 2.666064e-01	ci left: 7.489195e-04	ci right 9.829020e-04	k: 215	n:250000
Cons ci ratio: 3.389631e-02	ci left: 4.991863e-02	ci right 5.164380e-02	k: 12694	n:250000
KS ci ratio: 1.818121e-01	ci left: 1.687262e-03	ci right 2.028453e-03	k: 463	n:250000
APOBEC3H   250000 perm   80 sec   (3143 perm/sec)   p_kst 1.852000e-03   p_cons 5.077600e-02   p_joint 8.600000e-04

Joint ci ratio: 2.589263e-01	ci left: 7.668232e-04	ci right 9.983822e-04	k: 228	n:260000
Cons ci ratio: 3.324841e-02	ci left: 4.990561e-02	ci right 5.159673e-02	k: 13194	n:260000
KS ci ratio: 1.780156e-01	ci left: 1.695827e-03	ci right 2.030818e-03	k: 483	n:260000
APOBEC3H   260000 perm   84 sec   (3100 perm/sec)   p_kst 1.857692e-03   p_cons 5.074615e-02   p_joint 8.769231e-04

Joint ci ratio: 2.523962e-01	ci left: 7.800200e-04	ci right 1.008690e-03	k: 240	n:270000
Cons ci ratio: 3.262000e-02	ci left: 4.994162e-02	ci right 5.160138e-02	k: 13707	n:270000
KS ci ratio: 1.730765e-01	ci left: 1.732169e-03	ci right 2.063854e-03	k: 511	n:270000
APOBEC3H   270000 perm   88 sec   (3059 perm/sec)   p_kst 1.892593e-03   p_cons 5.076667e-02   p_joint 8.888889e-04

Joint ci ratio: 2.468252e-01	ci left: 7.889912e-04	ci right 1.014403e-03	k: 251	n:280000
Cons ci ratio: 3.203304e-02	ci left: 4.995407e-02	ci right 5.158382e-02	k: 14214	n:280000
KS ci ratio: 1.688405e-01	ci left: 1.759193e-03	ci right 2.086968e-03	k: 537	n:280000
APOBEC3H   280000 perm   93 sec   (3018 perm/sec)   p_kst 1.917857e-03   p_cons 5.076429e-02   p_joint 8.964286e-04

Joint ci ratio: 2.406932e-01	ci left: 8.038753e-04	ci right 1.026982e-03	k: 264	n:290000
Cons ci ratio: 3.147329e-02	ci left: 4.997618e-02	ci right 5.157764e-02	k: 14724	n:290000
KS ci ratio: 1.654899e-01	ci left: 1.771220e-03	ci right 2.094036e-03	k: 559	n:290000
APOBEC3H   290000 perm   97 sec   (2977 perm/sec)   p_kst 1.927586e-03   p_cons 5.077241e-02   p_joint 9.103448e-04

Joint ci ratio: 2.354208e-01	ci left: 8.146945e-04	ci right 1.035130e-03	k: 276	n:300000
Cons ci ratio: 3.091945e-02	ci left: 5.006653e-02	ci right 5.164216e-02	k: 15255	n:300000
KS ci ratio: 1.617752e-01	ci left: 1.795299e-03	ci right 2.114445e-03	k: 585	n:300000
APOBEC3H   300000 perm   102 sec   (2939 perm/sec)   p_kst 1.950000e-03   p_cons 5.085000e-02   p_joint 9.200000e-04

Joint ci ratio: 2.316871e-01	ci left: 8.157477e-04	ci right 1.032467e-03	k: 285	n:310000
Cons ci ratio: 3.037763e-02	ci left: 5.020253e-02	ci right 5.175426e-02	k: 15802	n:310000
KS ci ratio: 1.598781e-01	ci left: 1.780729e-03	ci right 2.093216e-03	k: 599	n:310000
APOBEC3H   310000 perm   107 sec   (2899 perm/sec)   p_kst 1.932258e-03   p_cons 5.097419e-02   p_joint 9.193548e-04

Joint ci ratio: 2.281256e-01	ci left: 8.167609e-04	ci right 1.029944e-03	k: 294	n:320000
Cons ci ratio: 2.991059e-02	ci left: 5.017821e-02	ci right 5.170494e-02	k: 16300	n:320000
KS ci ratio: 1.579174e-01	ci left: 1.770091e-03	ci right 2.076541e-03	k: 614	n:320000
APOBEC3H   320000 perm   112 sec   (2859 perm/sec)   p_kst 1.918750e-03   p_cons 5.093750e-02   p_joint 9.187500e-04

Joint ci ratio: 2.250944e-01	ci left: 8.148768e-04	ci right 1.024350e-03	k: 302	n:330000
Cons ci ratio: 2.946815e-02	ci left: 5.014350e-02	ci right 5.164622e-02	k: 16794	n:330000
KS ci ratio: 1.565258e-01	ci left: 1.748473e-03	ci right 2.048261e-03	k: 625	n:330000
APOBEC3H   330000 perm   117 sec   (2823 perm/sec)   p_kst 1.893939e-03   p_cons 5.089091e-02   p_joint 9.151515e-04

Joint ci ratio: 2.207643e-01	ci left: 8.242338e-04	ci right 1.031483e-03	k: 314	n:340000
Cons ci ratio: 2.903770e-02	ci left: 5.013436e-02	ci right 5.161449e-02	k: 17296	n:340000
KS ci ratio: 1.538451e-01	ci left: 1.759241e-03	ci right 2.055234e-03	k: 647	n:340000
APOBEC3H   340000 perm   122 sec   (2789 perm/sec)   p_kst 1.902941e-03   p_cons 5.087059e-02   p_joint 9.235294e-04

Joint ci ratio: 2.173412e-01	ci left: 8.276884e-04	ci right 1.032148e-03	k: 324	n:350000
Cons ci ratio: 2.862981e-02	ci left: 5.011170e-02	ci right 5.157004e-02	k: 17793	n:350000
KS ci ratio: 1.515243e-01	ci left: 1.763937e-03	ci right 2.055837e-03	k: 667	n:350000
APOBEC3H   350000 perm   127 sec   (2756 perm/sec)   p_kst 1.905714e-03   p_cons 5.083714e-02   p_joint 9.257143e-04

Joint ci ratio: 2.153633e-01	ci left: 8.204603e-04	ci right 1.021046e-03	k: 330	n:360000
Cons ci ratio: 2.822320e-02	ci left: 5.014286e-02	ci right 5.158105e-02	k: 18309	n:360000
KS ci ratio: 1.504047e-01	ci left: 1.741666e-03	ci right 2.027559e-03	k: 677	n:360000
APOBEC3H   360000 perm   132 sec   (2725 perm/sec)   p_kst 1.880556e-03   p_cons 5.085833e-02   p_joint 9.166667e-04

Joint ci ratio: 2.124939e-01	ci left: 8.213069e-04	ci right 1.019076e-03	k: 339	n:370000
Cons ci ratio: 2.781943e-02	ci left: 5.022081e-02	ci right 5.164029e-02	k: 18843	n:370000
KS ci ratio: 1.485542e-01	ci left: 1.738821e-03	ci right 2.020423e-03	k: 694	n:370000
APOBEC3H   370000 perm   137 sec   (2692 perm/sec)   p_kst 1.875676e-03   p_cons 5.092703e-02   p_joint 9.162162e-04

Joint ci ratio: 2.112563e-01	ci left: 8.096608e-04	ci right 1.003343e-03	k: 343	n:380000
Cons ci ratio: 2.748035e-02	ci left: 5.012746e-02	ci right 5.152677e-02	k: 19313	n:380000
KS ci ratio: 1.467703e-01	ci left: 1.736146e-03	ci right 2.013643e-03	k: 711	n:380000
APOBEC3H   380000 perm   143 sec   (2656 perm/sec)   p_kst 1.871053e-03   p_cons 5.082368e-02   p_joint 9.026316e-04

Joint ci ratio: 2.088421e-01	ci left: 8.083340e-04	ci right 9.992068e-04	k: 351	n:390000
Cons ci ratio: 2.712018e-02	ci left: 5.015620e-02	ci right 5.153767e-02	k: 19829	n:390000
KS ci ratio: 1.454496e-01	ci left: 1.723744e-03	ci right 1.996563e-03	k: 724	n:390000
APOBEC3H   390000 perm   149 sec   (2621 perm/sec)   p_kst 1.856410e-03   p_cons 5.084359e-02   p_joint 9.000000e-04

Joint ci ratio: 2.050883e-01	ci left: 8.189419e-04	ci right 1.008408e-03	k: 364	n:400000
Cons ci ratio: 2.677519e-02	ci left: 5.017864e-02	ci right 5.154288e-02	k: 20343	n:400000
KS ci ratio: 1.430993e-01	ci left: 1.738485e-03	ci right 2.008812e-03	k: 748	n:400000
APOBEC3H   400000 perm   154 sec   (2591 perm/sec)   p_kst 1.870000e-03   p_cons 5.085750e-02   p_joint 9.100000e-04

Joint ci ratio: 2.034239e-01	ci left: 8.128531e-04	ci right 9.991946e-04	k: 370	n:410000
Cons ci ratio: 2.640904e-02	ci left: 5.032371e-02	ci right 5.167289e-02	k: 20908	n:410000
KS ci ratio: 1.416883e-01	ci left: 1.731365e-03	ci right 1.997705e-03	k: 763	n:410000
APOBEC3H   410000 perm   160 sec   (2563 perm/sec)   p_kst 1.860976e-03   p_cons 5.099512e-02   p_joint 9.024390e-04

Joint ci ratio: 1.994308e-01	ci left: 8.274133e-04	ci right 1.012916e-03	k: 385	n:420000
Cons ci ratio: 2.608825e-02	ci left: 5.034840e-02	ci right 5.168161e-02	k: 21425	n:420000
KS ci ratio: 1.396907e-01	ci left: 1.740679e-03	ci right 2.004364e-03	k: 785	n:420000
APOBEC3H   420000 perm   166 sec   (2534 perm/sec)   p_kst 1.869048e-03   p_cons 5.101190e-02   p_joint 9.166667e-04

Joint ci ratio: 1.378608e-01	ci left: 1.747340e-03	ci right 2.008282e-03	k: 806	n:430000
Cons ci ratio: 2.575908e-02	ci left: 5.044601e-02	ci right 5.176470e-02	k: 21974	n:430000
KS ci ratio: 1.378608e-01	ci left: 1.747340e-03	ci right 2.008282e-03	k: 806	n:430000
APOBEC3H   430000 perm   171 sec   (2507 perm/sec)   p_kst 1.874419e-03   p_cons 5.110233e-02   p_joint 1.874419e-03

Joint ci ratio: 1.360188e-01	ci left: 1.755916e-03	ci right 2.014351e-03	k: 828	n:440000
Cons ci ratio: 2.548024e-02	ci left: 5.039470e-02	ci right 5.169758e-02	k: 22459	n:440000
KS ci ratio: 1.360188e-01	ci left: 1.755916e-03	ci right 2.014351e-03	k: 828	n:440000
APOBEC3H   440000 perm   177 sec   (2480 perm/sec)   p_kst 1.881818e-03   p_cons 5.104318e-02   p_joint 1.881818e-03

Joint ci ratio: 1.340908e-01	ci left: 1.768428e-03	ci right 2.024721e-03	k: 852	n:450000
Cons ci ratio: 2.518944e-02	ci left: 5.042527e-02	ci right 5.171385e-02	k: 22980	n:450000
KS ci ratio: 1.340908e-01	ci left: 1.768428e-03	ci right 2.024721e-03	k: 852	n:450000
APOBEC3H   450000 perm   183 sec   (2454 perm/sec)   p_kst 1.893333e-03   p_cons 5.106667e-02   p_joint 1.893333e-03

Joint ci ratio: 1.327746e-01	ci left: 1.765706e-03	ci right 2.018895e-03	k: 869	n:460000
Cons ci ratio: 2.490503e-02	ci left: 5.046756e-02	ci right 5.174245e-02	k: 23507	n:460000
KS ci ratio: 1.327746e-01	ci left: 1.765706e-03	ci right 2.018895e-03	k: 869	n:460000
APOBEC3H   460000 perm   190 sec   (2427 perm/sec)   p_kst 1.889130e-03   p_cons 5.110217e-02   p_joint 1.889130e-03

Joint ci ratio: 1.310530e-01	ci left: 1.775460e-03	ci right 2.026489e-03	k: 892	n:470000
Cons ci ratio: 2.462518e-02	ci left: 5.052717e-02	ci right 5.178901e-02	k: 24043	n:470000
KS ci ratio: 1.310530e-01	ci left: 1.775460e-03	ci right 2.026489e-03	k: 892	n:470000
APOBEC3H   470000 perm   196 sec   (2402 perm/sec)   p_kst 1.897872e-03   p_cons 5.115532e-02   p_joint 1.897872e-03

Joint ci ratio: 1.299665e-01	ci left: 1.768700e-03	ci right 2.016541e-03	k: 907	n:480000
Cons ci ratio: 2.433213e-02	ci left: 5.067343e-02	ci right 5.192366e-02	k: 24622	n:480000
KS ci ratio: 1.299665e-01	ci left: 1.768700e-03	ci right 2.016541e-03	k: 907	n:480000
APOBEC3H   480000 perm   202 sec   (2377 perm/sec)   p_kst 1.889583e-03   p_cons 5.129583e-02   p_joint 1.889583e-03

Joint ci ratio: 1.286973e-01	ci left: 1.768151e-03	ci right 2.013309e-03	k: 925	n:490000
Cons ci ratio: 2.407448e-02	ci left: 5.071235e-02	ci right 5.195011e-02	k: 25151	n:490000
KS ci ratio: 1.286973e-01	ci left: 1.768151e-03	ci right 2.013309e-03	k: 925	n:490000
APOBEC3H   490000 perm   208 sec   (2353 perm/sec)   p_kst 1.887755e-03   p_cons 5.132857e-02   p_joint 1.887755e-03

Joint ci ratio: 1.271276e-01	ci left: 1.777316e-03	ci right 2.020514e-03	k: 948	n:500000
Cons ci ratio: 2.383120e-02	ci left: 5.072392e-02	ci right 5.194928e-02	k: 25667	n:500000
KS ci ratio: 1.271276e-01	ci left: 1.777316e-03	ci right 2.020514e-03	k: 948	n:500000
APOBEC3H   500000 perm   215 sec   (2329 perm/sec)   p_kst 1.896000e-03   p_cons 5.133400e-02   p_joint 1.896000e-03

Joint ci ratio: 1.262665e-01	ci left: 1.767148e-03	ci right 2.007194e-03	k: 961	n:510000
Cons ci ratio: 2.361226e-02	ci left: 5.066491e-02	ci right 5.187745e-02	k: 26147	n:510000
KS ci ratio: 1.262665e-01	ci left: 1.767148e-03	ci right 2.007194e-03	k: 961	n:510000
APOBEC3H   510000 perm   221 sec   (2306 perm/sec)   p_kst 1.884314e-03   p_cons 5.126863e-02   p_joint 1.884314e-03

Joint ci ratio: 1.780987e-01	ci left: 8.478801e-04	ci right 1.015453e-03	k: 483	n:520000
Cons ci ratio: 2.339046e-02	ci left: 5.064456e-02	ci right 5.184507e-02	k: 26646	n:520000
KS ci ratio: 1.244041e-01	ci left: 1.787187e-03	ci right 2.026110e-03	k: 990	n:520000
APOBEC3H   520000 perm   228 sec   (2282 perm/sec)   p_kst 1.903846e-03   p_cons 5.124231e-02   p_joint 9.288462e-04

Joint ci ratio: 1.754005e-01	ci left: 8.589326e-04	ci right 1.025846e-03	k: 498	n:530000
Cons ci ratio: 2.316894e-02	ci left: 5.064941e-02	ci right 5.183852e-02	k: 27158	n:530000
KS ci ratio: 1.227423e-01	ci left: 1.802836e-03	ci right 2.040398e-03	k: 1017	n:530000
APOBEC3H   530000 perm   235 sec   (2260 perm/sec)   p_kst 1.918868e-03   p_cons 5.124151e-02   p_joint 9.396226e-04

Joint ci ratio: 1.734984e-01	ci left: 8.625075e-04	ci right 1.028107e-03	k: 509	n:540000
Cons ci ratio: 2.295054e-02	ci left: 5.066704e-02	ci right 5.184519e-02	k: 27677	n:540000
KS ci ratio: 1.214368e-01	ci left: 1.808947e-03	ci right 2.044596e-03	k: 1039	n:540000
APOBEC3H   540000 perm   241 sec   (2237 perm/sec)   p_kst 1.924074e-03   p_cons 5.125370e-02   p_joint 9.425926e-04

Joint ci ratio: 1.718219e-01	ci left: 8.642217e-04	ci right 1.028381e-03	k: 519	n:550000
Cons ci ratio: 2.275139e-02	ci left: 5.062801e-02	ci right 5.179491e-02	k: 28165	n:550000
KS ci ratio: 1.201721e-01	ci left: 1.814848e-03	ci right 2.048630e-03	k: 1061	n:550000
APOBEC3H   550000 perm   248 sec   (2217 perm/sec)   p_kst 1.929091e-03   p_cons 5.120909e-02   p_joint 9.436364e-04

Joint ci ratio: 1.697131e-01	ci left: 8.710116e-04	ci right 1.034222e-03	k: 532	n:560000
Cons ci ratio: 2.255692e-02	ci left: 5.059219e-02	ci right 5.174817e-02	k: 28654	n:560000
KS ci ratio: 1.188363e-01	ci left: 1.824017e-03	ci right 2.056184e-03	k: 1085	n:560000
APOBEC3H   560000 perm   255 sec   (2194 perm/sec)   p_kst 1.937500e-03   p_cons 5.116786e-02   p_joint 9.500000e-04

Joint ci ratio: 1.682982e-01	ci left: 8.708523e-04	ci right 1.032535e-03	k: 541	n:570000
Cons ci ratio: 2.237099e-02	ci left: 5.054197e-02	ci right 5.168716e-02	k: 29134	n:570000
KS ci ratio: 1.177036e-01	ci left: 1.827769e-03	ci right 2.058042e-03	k: 1106	n:570000
APOBEC3H   570000 perm   263 sec   (2169 perm/sec)   p_kst 1.940351e-03   p_cons 5.111228e-02   p_joint 9.491228e-04

Joint ci ratio: 1.669181e-01	ci left: 8.707040e-04	ci right 1.030900e-03	k: 550	n:580000
Cons ci ratio: 2.216082e-02	ci left: 5.061872e-02	ci right 5.175474e-02	k: 29687	n:580000
KS ci ratio: 1.167583e-01	ci left: 1.826380e-03	ci right 2.054503e-03	k: 1124	n:580000
APOBEC3H   580000 perm   270 sec   (2145 perm/sec)   p_kst 1.937931e-03   p_cons 5.118448e-02   p_joint 9.482759e-04

Joint ci ratio: 1.654237e-01	ci left: 8.721906e-04	ci right 1.031080e-03	k: 560	n:590000
Cons ci ratio: 2.196028e-02	ci left: 5.067605e-02	ci right 5.180294e-02	k: 30230	n:590000
KS ci ratio: 1.155320e-01	ci left: 1.834921e-03	ci right 2.061539e-03	k: 1148	n:590000
APOBEC3H   590000 perm   278 sec   (2122 perm/sec)   p_kst 1.945763e-03   p_cons 5.123729e-02   p_joint 9.491525e-04

Joint ci ratio: 1.632548e-01	ci left: 8.816263e-04	ci right 1.039923e-03	k: 575	n:600000
Cons ci ratio: 2.179422e-02	ci left: 5.060219e-02	ci right 5.171882e-02	k: 30695	n:600000
KS ci ratio: 1.143924e-01	ci left: 1.841571e-03	ci right 2.066615e-03	k: 1171	n:600000
APOBEC3H   600000 perm   286 sec   (2101 perm/sec)   p_kst 1.951667e-03   p_cons 5.115833e-02   p_joint 9.583333e-04

Joint ci ratio: 1.624116e-01	ci left: 8.766085e-04	ci right 1.033111e-03	k: 581	n:610000
Cons ci ratio: 2.160667e-02	ci left: 5.064332e-02	ci right 5.175111e-02	k: 31229	n:610000
KS ci ratio: 1.134287e-01	ci left: 1.843234e-03	ci right 2.066457e-03	k: 1191	n:610000
APOBEC3H   610000 perm   293 sec   (2084 perm/sec)   p_kst 1.952459e-03   p_cons 5.119508e-02   p_joint 9.524590e-04

Joint ci ratio: 1.613069e-01	ci left: 8.748501e-04	ci right 1.029874e-03	k: 589	n:620000
Cons ci ratio: 2.143241e-02	ci left: 5.064464e-02	ci right 5.174343e-02	k: 31739	n:620000
KS ci ratio: 1.127689e-01	ci left: 1.835446e-03	ci right 2.056346e-03	k: 1205	n:620000
APOBEC3H   620000 perm   300 sec   (2066 perm/sec)   p_kst 1.943548e-03   p_cons 5.119194e-02   p_joint 9.500000e-04

Joint ci ratio: 1.599570e-01	ci left: 8.761986e-04	ci right 1.030037e-03	k: 599	n:630000
Cons ci ratio: 2.126683e-02	ci left: 5.062543e-02	ci right 5.171521e-02	k: 32236	n:630000
KS ci ratio: 1.118452e-01	ci left: 1.837166e-03	ci right 2.056343e-03	k: 1225	n:630000
APOBEC3H   630000 perm   308 sec   (2048 perm/sec)   p_kst 1.944444e-03   p_cons 5.116825e-02   p_joint 9.507937e-04

Joint ci ratio: 1.582513e-01	ci left: 8.820120e-04	ci right 1.035063e-03	k: 612	n:640000
Cons ci ratio: 2.109823e-02	ci left: 5.063795e-02	ci right 5.171925e-02	k: 32753	n:640000
KS ci ratio: 1.108548e-01	ci left: 1.841878e-03	ci right 2.059545e-03	k: 1247	n:640000
APOBEC3H   640000 perm   315 sec   (2032 perm/sec)   p_kst 1.948438e-03   p_cons 5.117656e-02   p_joint 9.562500e-04

Joint ci ratio: 1.568501e-01	ci left: 8.846986e-04	ci right 1.036729e-03	k: 623	n:650000
Cons ci ratio: 2.095250e-02	ci left: 5.056285e-02	ci right 5.163500e-02	k: 33213	n:650000
KS ci ratio: 1.096311e-01	ci left: 1.855431e-03	ci right 2.072123e-03	k: 1275	n:650000
APOBEC3H   650000 perm   323 sec   (2015 perm/sec)   p_kst 1.961538e-03   p_cons 5.109692e-02   p_joint 9.584615e-04

Joint ci ratio: 1.557312e-01	ci left: 8.843971e-04	ci right 1.035190e-03	k: 632	n:660000
Cons ci ratio: 2.079738e-02	ci left: 5.054735e-02	ci right 5.161114e-02	k: 33711	n:660000
KS ci ratio: 1.086140e-01	ci left: 1.862690e-03	ci right 2.078082e-03	k: 1299	n:660000
APOBEC3H   660000 perm   330 sec   (2000 perm/sec)   p_kst 1.968182e-03   p_cons 5.107727e-02   p_joint 9.575758e-04

Joint ci ratio: 1.551203e-01	ci left: 8.783694e-04	ci right 1.027492e-03	k: 637	n:670000
Cons ci ratio: 2.064661e-02	ci left: 5.052788e-02	ci right 5.158346e-02	k: 34206	n:670000
KS ci ratio: 1.081168e-01	ci left: 1.852313e-03	ci right 2.065463e-03	k: 1311	n:670000
APOBEC3H   670000 perm   338 sec   (1985 perm/sec)   p_kst 1.956716e-03   p_cons 5.105373e-02   p_joint 9.507463e-04

Joint ci ratio: 1.542765e-01	ci left: 8.753477e-04	ci right 1.023075e-03	k: 644	n:680000
Cons ci ratio: 2.048850e-02	ci left: 5.055878e-02	ci right 5.160682e-02	k: 34735	n:680000
KS ci ratio: 1.075450e-01	ci left: 1.845106e-03	ci right 2.056232e-03	k: 1325	n:680000
APOBEC3H   680000 perm   345 sec   (1970 perm/sec)   p_kst 1.948529e-03   p_cons 5.108088e-02   p_joint 9.470588e-04

Joint ci ratio: 1.530942e-01	ci left: 8.765970e-04	ci right 1.023297e-03	k: 654	n:690000
Cons ci ratio: 2.033883e-02	ci left: 5.056573e-02	ci right 5.160616e-02	k: 35248	n:690000
KS ci ratio: 1.066240e-01	ci left: 1.850806e-03	ci right 2.060657e-03	k: 1348	n:690000
APOBEC3H   690000 perm   353 sec   (1956 perm/sec)   p_kst 1.953623e-03   p_cons 5.108406e-02   p_joint 9.478261e-04

Joint ci ratio: 1.517106e-01	ci left: 8.805634e-04	ci right 1.026474e-03	k: 666	n:700000
Cons ci ratio: 2.019864e-02	ci left: 5.054265e-02	ci right 5.157536e-02	k: 35740	n:700000
KS ci ratio: 1.057648e-01	ci left: 1.854960e-03	ci right 2.063482e-03	k: 1370	n:700000
APOBEC3H   700000 perm   361 sec   (1941 perm/sec)   p_kst 1.957143e-03   p_cons 5.105714e-02   p_joint 9.514286e-04

Joint ci ratio: 1.509210e-01	ci left: 8.776469e-04	ci right 1.022249e-03	k: 673	n:710000
Cons ci ratio: 2.003830e-02	ci left: 5.063098e-02	ci right 5.165719e-02	k: 36311	n:710000
KS ci ratio: 1.051913e-01	ci left: 1.849403e-03	ci right 2.056103e-03	k: 1385	n:710000
APOBEC3H   710000 perm   369 sec   (1926 perm/sec)   p_kst 1.950704e-03   p_cons 5.114225e-02   p_joint 9.478873e-04

Joint ci ratio: 1.499234e-01	ci left: 8.774868e-04	ci right 1.021022e-03	k: 682	n:720000
Cons ci ratio: 1.990277e-02	ci left: 5.061460e-02	ci right 5.163346e-02	k: 36808	n:720000
KS ci ratio: 1.044777e-01	ci left: 1.849414e-03	ci right 2.054626e-03	k: 1404	n:720000
APOBEC3H   720000 perm   377 sec   (1912 perm/sec)   p_kst 1.950000e-03   p_cons 5.112222e-02   p_joint 9.472222e-04

Joint ci ratio: 1.484096e-01	ci left: 8.839290e-04	ci right 1.026928e-03	k: 696	n:730000
Cons ci ratio: 1.975740e-02	ci left: 5.066004e-02	ci right 5.167229e-02	k: 37350	n:730000
KS ci ratio: 1.036690e-01	ci left: 1.853432e-03	ci right 2.057402e-03	k: 1426	n:730000
APOBEC3H   730000 perm   385 sec   (1898 perm/sec)   p_kst 1.953425e-03   p_cons 5.116438e-02   p_joint 9.534247e-04

Joint ci ratio: 1.469407e-01	ci left: 8.902041e-04	ci right 1.032668e-03	k: 710	n:740000
Cons ci ratio: 1.963074e-02	ci left: 5.062762e-02	ci right 5.163266e-02	k: 37835	n:740000
KS ci ratio: 1.028078e-01	ci left: 1.859981e-03	ci right 2.062868e-03	k: 1450	n:740000
APOBEC3H   740000 perm   393 sec   (1885 perm/sec)   p_kst 1.959459e-03   p_cons 5.112838e-02   p_joint 9.594595e-04

Joint ci ratio: 1.460195e-01	ci left: 8.898949e-04	ci right 1.031339e-03	k: 719	n:750000
Cons ci ratio: 1.948692e-02	ci left: 5.069296e-02	ci right 5.169184e-02	k: 38393	n:750000
KS ci ratio: 1.021064e-01	ci left: 1.861165e-03	ci right 2.062713e-03	k: 1470	n:750000
APOBEC3H   750000 perm   401 sec   (1872 perm/sec)   p_kst 1.960000e-03   p_cons 5.119067e-02   p_joint 9.586667e-04

Joint ci ratio: 1.449166e-01	ci left: 8.921327e-04	ci right 1.032768e-03	k: 730	n:760000
Cons ci ratio: 1.936300e-02	ci left: 5.067279e-02	ci right 5.166485e-02	k: 38887	n:760000
KS ci ratio: 1.013512e-01	ci left: 1.864887e-03	ci right 2.065255e-03	k: 1492	n:760000
APOBEC3H   760000 perm   409 sec   (1859 perm/sec)   p_kst 1.963158e-03   p_cons 5.116711e-02   p_joint 9.605263e-04

Joint ci ratio: 1.441302e-01	ci left: 8.905605e-04	ci right 1.030121e-03	k: 738	n:770000
Cons ci ratio: 1.924269e-02	ci left: 5.064669e-02	ci right 5.163201e-02	k: 39376	n:770000
KS ci ratio: 1.007458e-01	ci left: 1.863453e-03	ci right 2.062401e-03	k: 1510	n:770000
APOBEC3H   770000 perm   417 sec   (1845 perm/sec)   p_kst 1.961039e-03   p_cons 5.113766e-02   p_joint 9.584416e-04

Joint ci ratio: 1.426889e-01	ci left: 8.976840e-04	ci right 1.036834e-03	k: 753	n:780000
Cons ci ratio: 1.910315e-02	ci left: 5.072977e-02	ci right 5.170947e-02	k: 39950	n:780000
KS ci ratio: 9.969488e-02	ci left: 1.879561e-03	ci right 2.078013e-03	k: 1542	n:780000
APOBEC3H   780000 perm   426 sec   (1832 perm/sec)   p_kst 1.976923e-03   p_cons 5.121795e-02   p_joint 9.653846e-04

Joint ci ratio: 1.424065e-01	ci left: 8.899827e-04	ci right 1.027643e-03	k: 756	n:790000
Cons ci ratio: 1.896585e-02	ci left: 5.081454e-02	ci right 5.178875e-02	k: 40527	n:790000
KS ci ratio: 9.915035e-02	ci left: 1.876753e-03	ci right 2.073763e-03	k: 1559	n:790000
APOBEC3H   790000 perm   434 sec   (1819 perm/sec)   p_kst 1.973418e-03   p_cons 5.130000e-02   p_joint 9.569620e-04

Joint ci ratio: 1.418457e-01	ci left: 8.860911e-04	ci right 1.022564e-03	k: 762	n:800000
Cons ci ratio: 1.884574e-02	ci left: 5.082380e-02	ci right 5.179195e-02	k: 41045	n:800000
KS ci ratio: 9.852081e-02	ci left: 1.877675e-03	ci right 2.073459e-03	k: 1579	n:800000
APOBEC3H   800000 perm   443 sec   (1807 perm/sec)   p_kst 1.973750e-03   p_cons 5.130625e-02   p_joint 9.525000e-04

Joint ci ratio: 1.408341e-01	ci left: 8.882518e-04	ci right 1.024000e-03	k: 773	n:810000
Cons ci ratio: 1.873263e-02	ci left: 5.080827e-02	ci right 5.177025e-02	k: 41543	n:810000
KS ci ratio: 9.796447e-02	ci left: 1.876170e-03	ci right 2.070629e-03	k: 1597	n:810000
APOBEC3H   810000 perm   452 sec   (1794 perm/sec)   p_kst 1.971605e-03   p_cons 5.128765e-02   p_joint 9.543210e-04

Joint ci ratio: 1.400224e-01	ci left: 8.880094e-04	ci right 1.022873e-03	k: 782	n:820000
Cons ci ratio: 1.862386e-02	ci left: 5.078099e-02	ci right 5.173682e-02	k: 42031	n:820000
KS ci ratio: 9.738726e-02	ci left: 1.875895e-03	ci right 2.069114e-03	k: 1616	n:820000
APOBEC3H   820000 perm   460 sec   (1782 perm/sec)   p_kst 1.970732e-03   p_cons 5.125732e-02   p_joint 9.536585e-04

Joint ci ratio: 1.391367e-01	ci left: 8.889380e-04	ci right 1.023018e-03	k: 792	n:830000
Cons ci ratio: 1.850138e-02	ci left: 5.083596e-02	ci right 5.178646e-02	k: 42587	n:830000
KS ci ratio: 9.687950e-02	ci left: 1.873278e-03	ci right 2.065164e-03	k: 1633	n:830000
APOBEC3H   830000 perm   469 sec   (1769 perm/sec)   p_kst 1.967470e-03   p_cons 5.130964e-02   p_joint 9.542169e-04

Joint ci ratio: 1.382676e-01	ci left: 8.898471e-04	ci right 1.023157e-03	k: 802	n:840000
Cons ci ratio: 1.839500e-02	ci left: 5.081733e-02	ci right 5.176196e-02	k: 43082	n:840000
KS ci ratio: 9.626281e-02	ci left: 1.875373e-03	ci right 2.066182e-03	k: 1654	n:840000
APOBEC3H   840000 perm   478 sec   (1756 perm/sec)   p_kst 1.969048e-03   p_cons 5.128810e-02   p_joint 9.547619e-04

Joint ci ratio: 1.376690e-01	ci left: 8.873293e-04	ci right 1.019639e-03	k: 809	n:850000
Cons ci ratio: 1.828115e-02	ci left: 5.084835e-02	ci right 5.178765e-02	k: 43619	n:850000
KS ci ratio: 9.577234e-02	ci left: 1.872830e-03	ci right 2.062355e-03	k: 1671	n:850000
APOBEC3H   850000 perm   487 sec   (1744 perm/sec)   p_kst 1.965882e-03   p_cons 5.131647e-02   p_joint 9.517647e-04

Joint ci ratio: 1.370782e-01	ci left: 8.848712e-04	ci right 1.016202e-03	k: 816	n:860000
Cons ci ratio: 1.817415e-02	ci left: 5.085320e-02	ci right 5.178703e-02	k: 44134	n:860000
KS ci ratio: 9.520461e-02	ci left: 1.873753e-03	ci right 2.062185e-03	k: 1691	n:860000
APOBEC3H   860000 perm   497 sec   (1730 perm/sec)   p_kst 1.966279e-03   p_cons 5.131860e-02   p_joint 9.488372e-04

Joint ci ratio: 1.361645e-01	ci left: 8.869118e-04	ci right 1.017597e-03	k: 827	n:870000
Cons ci ratio: 1.806348e-02	ci left: 5.088771e-02	ci right 5.181643e-02	k: 44675	n:870000
KS ci ratio: 9.423412e-02	ci left: 1.891494e-03	ci right 2.079663e-03	k: 1726	n:870000
APOBEC3H   870000 perm   517 sec   (1684 perm/sec)   p_kst 1.983908e-03   p_cons 5.135057e-02   p_joint 9.505747e-04

Joint ci ratio: 1.351882e-01	ci left: 8.900069e-04	ci right 1.020132e-03	k: 839	n:880000
Cons ci ratio: 1.795773e-02	ci left: 5.090561e-02	ci right 5.182916e-02	k: 45202	n:880000
KS ci ratio: 9.347894e-02	ci left: 1.901071e-03	ci right 2.088595e-03	k: 1754	n:880000
APOBEC3H   880000 perm   530 sec   (1660 perm/sec)   p_kst 1.993182e-03   p_cons 5.136591e-02   p_joint 9.534091e-04

Joint ci ratio: 1.342326e-01	ci left: 8.930357e-04	ci right 1.022607e-03	k: 851	n:890000
Cons ci ratio: 1.785134e-02	ci left: 5.093655e-02	ci right 5.185513e-02	k: 45741	n:890000
KS ci ratio: 9.300332e-02	ci left: 1.899464e-03	ci right 2.085824e-03	k: 1772	n:890000
APOBEC3H   890000 perm   550 sec   (1619 perm/sec)   p_kst 1.991011e-03   p_cons 5.139438e-02   p_joint 9.561798e-04

Joint ci ratio: 1.333743e-01	ci left: 8.949262e-04	ci right 1.023876e-03	k: 862	n:900000
Cons ci ratio: 1.775047e-02	ci left: 5.094691e-02	ci right 5.186043e-02	k: 46262	n:900000
KS ci ratio: 9.245733e-02	ci left: 1.901151e-03	ci right 2.086522e-03	k: 1793	n:900000
APOBEC3H   900000 perm   570 sec   (1580 perm/sec)   p_kst 1.992222e-03   p_cons 5.140222e-02   p_joint 9.577778e-04

Joint ci ratio: 1.326843e-01	ci left: 8.946528e-04	ci right 1.022844e-03	k: 871	n:910000
Cons ci ratio: 1.765188e-02	ci left: 5.095376e-02	ci right 5.186228e-02	k: 46780	n:910000
KS ci ratio: 9.204797e-02	ci left: 1.897436e-03	ci right 2.081581e-03	k: 1809	n:910000
APOBEC3H   910000 perm   590 sec   (1541 perm/sec)   p_kst 1.987912e-03   p_cons 5.140659e-02   p_joint 9.571429e-04

Joint ci ratio: 1.319299e-01	ci left: 8.954381e-04	ci right 1.022955e-03	k: 881	n:920000
Cons ci ratio: 1.755531e-02	ci left: 5.095832e-02	ci right 5.186190e-02	k: 47296	n:920000
KS ci ratio: 9.154359e-02	ci left: 1.898052e-03	ci right 2.081194e-03	k: 1829	n:920000
APOBEC3H   920000 perm   601 sec   (1530 perm/sec)   p_kst 1.988043e-03   p_cons 5.140870e-02   p_joint 9.576087e-04

Joint ci ratio: 1.311883e-01	ci left: 8.962086e-04	ci right 1.023062e-03	k: 891	n:930000
Cons ci ratio: 1.746049e-02	ci left: 5.096172e-02	ci right 5.186043e-02	k: 47811	n:930000
KS ci ratio: 9.102276e-02	ci left: 1.899708e-03	ci right 2.081911e-03	k: 1850	n:930000
APOBEC3H   930000 perm   622 sec   (1495 perm/sec)   p_kst 1.989247e-03   p_cons 5.140968e-02   p_joint 9.580645e-04

Joint ci ratio: 1.303145e-01	ci left: 8.990229e-04	ci right 1.025361e-03	k: 903	n:940000
Cons ci ratio: 1.737023e-02	ci left: 5.094811e-02	ci right 5.184189e-02	k: 48310	n:940000
KS ci ratio: 9.063208e-02	ci left: 1.896133e-03	ci right 2.077171e-03	k: 1866	n:940000
APOBEC3H   940000 perm   643 sec   (1463 perm/sec)   p_kst 1.985106e-03   p_cons 5.139362e-02   p_joint 9.606383e-04

Joint ci ratio: 1.298130e-01	ci left: 8.966881e-04	ci right 1.022176e-03	k: 910	n:950000
Cons ci ratio: 1.727166e-02	ci left: 5.098931e-02	ci right 5.187869e-02	k: 48861	n:950000
KS ci ratio: 9.034259e-02	ci left: 1.888519e-03	ci right 2.068224e-03	k: 1878	n:950000
APOBEC3H   950000 perm   662 sec   (1436 perm/sec)   p_kst 1.976842e-03   p_cons 5.143263e-02   p_joint 9.578947e-04

Joint ci ratio: 1.294586e-01	ci left: 8.923869e-04	ci right 1.016906e-03	k: 915	n:960000
Cons ci ratio: 1.718336e-02	ci left: 5.098091e-02	ci right 5.186555e-02	k: 49365	n:960000
KS ci ratio: 9.000817e-02	ci left: 1.883101e-03	ci right 2.061592e-03	k: 1892	n:960000
APOBEC3H   960000 perm   683 sec   (1406 perm/sec)   p_kst 1.970833e-03   p_cons 5.142187e-02   p_joint 9.531250e-04

Joint ci ratio: 1.291772e-01	ci left: 8.871772e-04	ci right 1.010679e-03	k: 919	n:970000
Cons ci ratio: 1.709677e-02	ci left: 5.097064e-02	ci right 5.185060e-02	k: 49867	n:970000
KS ci ratio: 8.970100e-02	ci left: 1.876788e-03	ci right 2.054042e-03	k: 1905	n:970000
APOBEC3H   970000 perm   704 sec   (1378 perm/sec)   p_kst 1.963918e-03   p_cons 5.140928e-02   p_joint 9.474227e-04

Joint ci ratio: 1.285500e-01	ci left: 8.870120e-04	ci right 1.009846e-03	k: 928	n:980000
Cons ci ratio: 1.700827e-02	ci left: 5.097888e-02	ci right 5.185438e-02	k: 50387	n:980000
KS ci ratio: 8.909509e-02	ci left: 1.883575e-03	ci right 2.060206e-03	k: 1931	n:980000
APOBEC3H   980000 perm   725 sec   (1351 perm/sec)   p_kst 1.970408e-03   p_cons 5.141531e-02   p_joint 9.469388e-04

Joint ci ratio: 1.277275e-01	ci left: 8.897851e-04	ci right 1.012155e-03	k: 940	n:990000
Cons ci ratio: 1.692200e-02	ci left: 5.098194e-02	ci right 5.185301e-02	k: 50902	n:990000
KS ci ratio: 8.854662e-02	ci left: 1.888253e-03	ci right 2.064176e-03	k: 1955	n:990000
APOBEC3H   990000 perm   747 sec   (1325 perm/sec)   p_kst 1.974747e-03   p_cons 5.141616e-02   p_joint 9.494949e-04

Joint ci ratio: 1.267876e-01	ci left: 8.944417e-04	ci right 1.016479e-03	k: 954	n:1000000
Cons ci ratio: 1.683911e-02	ci left: 5.097300e-02	ci right 5.183960e-02	k: 51405	n:1000000
KS ci ratio: 8.809736e-02	ci left: 1.888929e-03	ci right 2.063976e-03	k: 1975	n:1000000
APOBEC3H   1000000 perm   770 sec   (1299 perm/sec)   p_kst 1.975000e-03   p_cons 5.140500e-02   p_joint 9.540000e-04

Joint ci ratio: 1.261289e-01	ci left: 8.951736e-04	ci right 1.016629e-03	k: 964	n:1010000
Cons ci ratio: 1.675283e-02	ci left: 5.099087e-02	ci right 5.185329e-02	k: 51935	n:1010000
KS ci ratio: 8.772094e-02	ci left: 1.886688e-03	ci right 2.060742e-03	k: 1992	n:1010000
APOBEC3H   1010000 perm   793 sec   (1274 perm/sec)   p_kst 1.972277e-03   p_cons 5.142079e-02   p_joint 9.544554e-04

Joint ci ratio: 1.253518e-01	ci left: 8.977921e-04	ci right 1.018796e-03	k: 976	n:1020000
Cons ci ratio: 1.667105e-02	ci left: 5.098984e-02	ci right 5.184800e-02	k: 52446	n:1020000
KS ci ratio: 8.730580e-02	ci left: 1.886411e-03	ci right 2.059574e-03	k: 2011	n:1020000
APOBEC3H   1020000 perm   815 sec   (1251 perm/sec)   p_kst 1.971569e-03   p_cons 5.141765e-02   p_joint 9.568627e-04

Joint ci ratio: 1.249688e-01	ci left: 8.947185e-04	ci right 1.014912e-03	k: 982	n:1030000
Cons ci ratio: 1.659061e-02	ci left: 5.098788e-02	ci right 5.184183e-02	k: 52956	n:1030000
KS ci ratio: 8.706849e-02	ci left: 1.878543e-03	ci right 2.050491e-03	k: 2022	n:1030000
APOBEC3H   1030000 perm   838 sec   (1229 perm/sec)   p_kst 1.963107e-03   p_cons 5.141359e-02   p_joint 9.533981e-04

Joint ci ratio: 1.247157e-01	ci left: 8.898413e-04	ci right 1.009120e-03	k: 986	n:1040000
Cons ci ratio: 1.651329e-02	ci left: 5.097447e-02	ci right 5.182418e-02	k: 53454	n:1040000
KS ci ratio: 8.676900e-02	ci left: 1.873648e-03	ci right 2.044529e-03	k: 2036	n:1040000
APOBEC3H   1040000 perm   858 sec   (1212 perm/sec)   p_kst 1.957692e-03   p_cons 5.139808e-02   p_joint 9.480769e-04

Joint ci ratio: 1.242759e-01	ci left: 8.878256e-04	ci right 1.006384e-03	k: 993	n:1050000
Cons ci ratio: 1.643286e-02	ci left: 5.098600e-02	ci right 5.183172e-02	k: 53978	n:1050000
KS ci ratio: 8.640929e-02	ci left: 1.871644e-03	ci right 2.041598e-03	k: 2053	n:1050000
APOBEC3H   1050000 perm   881 sec   (1192 perm/sec)   p_kst 1.955238e-03   p_cons 5.140762e-02   p_joint 9.457143e-04

Joint ci ratio: 1.236554e-01	ci left: 8.885913e-04	ci right 1.006616e-03	k: 1003	n:1060000
Cons ci ratio: 1.635565e-02	ci left: 5.098510e-02	ci right 5.182679e-02	k: 54489	n:1060000
KS ci ratio: 8.603321e-02	ci left: 1.870602e-03	ci right 2.039685e-03	k: 2071	n:1060000
APOBEC3H   1060000 perm   900 sec   (1177 perm/sec)   p_kst 1.953774e-03   p_cons 5.140472e-02   p_joint 9.462264e-04

Joint ci ratio: 1.226814e-01	ci left: 8.947795e-04	ci right 1.012622e-03	k: 1019	n:1070000
Cons ci ratio: 1.627967e-02	ci left: 5.098329e-02	ci right 5.182101e-02	k: 54999	n:1070000
KS ci ratio: 8.549819e-02	ci left: 1.876898e-03	ci right 2.045443e-03	k: 2097	n:1070000
APOBEC3H   1070000 perm   921 sec   (1162 perm/sec)   p_kst 1.959813e-03   p_cons 5.140093e-02   p_joint 9.523364e-04

Joint ci ratio: 1.222627e-01	ci left: 8.927774e-04	ci right 1.009926e-03	k: 1026	n:1080000
Cons ci ratio: 1.620290e-02	ci left: 5.099260e-02	ci right 5.182648e-02	k: 55521	n:1080000
KS ci ratio: 8.511368e-02	ci left: 1.876736e-03	ci right 2.044471e-03	k: 2116	n:1080000
APOBEC3H   1080000 perm   944 sec   (1145 perm/sec)   p_kst 1.959259e-03   p_cons 5.140833e-02   p_joint 9.500000e-04

Joint ci ratio: 1.216718e-01	ci left: 8.934812e-04	ci right 1.010114e-03	k: 1036	n:1090000
Cons ci ratio: 1.612827e-02	ci left: 5.099534e-02	ci right 5.182539e-02	k: 56036	n:1090000
KS ci ratio: 8.477409e-02	ci left: 1.874784e-03	ci right 2.041642e-03	k: 2133	n:1090000
APOBEC3H   1090000 perm   961 sec   (1134 perm/sec)   p_kst 1.956881e-03   p_cons 5.140917e-02   p_joint 9.504587e-04

Joint ci ratio: 1.213215e-01	ci left: 8.906473e-04	ci right 1.006552e-03	k: 1042	n:1100000
Cons ci ratio: 1.605391e-02	ci left: 5.100257e-02	ci right 5.182888e-02	k: 56556	n:1100000
KS ci ratio: 8.439922e-02	ci left: 1.874647e-03	ci right 2.040720e-03	k: 2152	n:1100000
APOBEC3H   1100000 perm   985 sec   (1116 perm/sec)   p_kst 1.956364e-03   p_cons 5.141455e-02   p_joint 9.472727e-04

Joint ci ratio: 1.205722e-01	ci left: 8.939809e-04	ci right 1.009550e-03	k: 1055	n:1110000
Cons ci ratio: 1.597820e-02	ci left: 5.102404e-02	ci right 5.184677e-02	k: 57092	n:1110000
KS ci ratio: 8.379766e-02	ci left: 1.885100e-03	ci right 2.050850e-03	k: 2183	n:1110000
APOBEC3H   1110000 perm   1004 sec   (1106 perm/sec)   p_kst 1.966667e-03   p_cons 5.143423e-02   p_joint 9.504505e-04

Joint ci ratio: 1.199490e-01	ci left: 8.955250e-04	ci right 1.010652e-03	k: 1066	n:1120000
Cons ci ratio: 1.590415e-02	ci left: 5.104158e-02	ci right 5.186074e-02	k: 57624	n:1120000
KS ci ratio: 8.335975e-02	ci left: 1.888375e-03	ci right 2.053503e-03	k: 2206	n:1120000
APOBEC3H   1120000 perm   1024 sec   (1094 perm/sec)   p_kst 1.969643e-03   p_cons 5.145000e-02   p_joint 9.517857e-04

Joint ci ratio: 1.195019e-01	ci left: 8.944676e-04	ci right 1.009000e-03	k: 1074	n:1130000
Cons ci ratio: 1.583355e-02	ci left: 5.104383e-02	ci right 5.185935e-02	k: 58139	n:1130000
KS ci ratio: 8.294727e-02	ci left: 1.890728e-03	ci right 2.055204e-03	k: 2228	n:1130000
APOBEC3H   1130000 perm   1048 sec   (1078 perm/sec)   p_kst 1.971681e-03   p_cons 5.145044e-02   p_joint 9.504425e-04

Joint ci ratio: 1.190048e-01	ci left: 8.942806e-04	ci right 1.008279e-03	k: 1083	n:1140000
Cons ci ratio: 1.576161e-02	ci left: 5.106003e-02	ci right 5.187207e-02	k: 58670	n:1140000
KS ci ratio: 8.266974e-02	ci left: 1.887028e-03	ci right 2.050607e-03	k: 2243	n:1140000
APOBEC3H   1140000 perm   1067 sec   (1069 perm/sec)   p_kst 1.967544e-03   p_cons 5.146491e-02   p_joint 9.500000e-04

Joint ci ratio: 1.187862e-01	ci left: 8.898790e-04	ci right 1.003094e-03	k: 1087	n:1150000
Cons ci ratio: 1.569988e-02	ci left: 5.101878e-02	ci right 5.182696e-02	k: 59135	n:1150000
KS ci ratio: 8.246818e-02	ci left: 1.879987e-03	ci right 2.042538e-03	k: 2254	n:1150000
APOBEC3H   1150000 perm   1079 sec   (1066 perm/sec)   p_kst 1.960000e-03   p_cons 5.142174e-02   p_joint 9.452174e-04

Joint ci ratio: 1.182979e-01	ci left: 8.897362e-04	ci right 1.002435e-03	k: 1096	n:1160000
Cons ci ratio: 1.563085e-02	ci left: 5.102806e-02	ci right 5.183280e-02	k: 59658	n:1160000
KS ci ratio: 8.215916e-02	ci left: 1.878133e-03	ci right 2.039887e-03	k: 2271	n:1160000
APOBEC3H   1160000 perm   1092 sec   (1062 perm/sec)   p_kst 1.957759e-03   p_cons 5.142931e-02   p_joint 9.448276e-04

Joint ci ratio: 1.179224e-01	ci left: 8.879377e-04	ci right 1.000027e-03	k: 1103	n:1170000
Cons ci ratio: 1.556477e-02	ci left: 5.102442e-02	ci right 5.182567e-02	k: 60166	n:1170000
KS ci ratio: 8.192534e-02	ci left: 1.872964e-03	ci right 2.033791e-03	k: 2284	n:1170000
APOBEC3H   1170000 perm   1104 sec   (1059 perm/sec)   p_kst 1.952137e-03   p_cons 5.142393e-02   p_joint 9.427350e-04

Joint ci ratio: 1.174447e-01	ci left: 8.878154e-04	ci right 9.994033e-04	k: 1112	n:1180000
Cons ci ratio: 1.550356e-02	ci left: 5.099551e-02	ci right 5.179313e-02	k: 60644	n:1180000
KS ci ratio: 8.165792e-02	ci left: 1.869543e-03	ci right 2.029528e-03	k: 2299	n:1180000
APOBEC3H   1180000 perm   1130 sec   (1044 perm/sec)   p_kst 1.948305e-03   p_cons 5.139322e-02   p_joint 9.423729e-04

Joint ci ratio: 1.170772e-01	ci left: 8.860645e-04	ci right 9.970598e-04	k: 1119	n:1190000
Cons ci ratio: 1.543747e-02	ci left: 5.100226e-02	ci right 5.179656e-02	k: 61164	n:1190000
KS ci ratio: 8.139309e-02	ci left: 1.866180e-03	ci right 2.025335e-03	k: 2314	n:1190000
APOBEC3H   1190000 perm   1147 sec   (1038 perm/sec)   p_kst 1.944538e-03   p_cons 5.139832e-02   p_joint 9.403361e-04

Joint ci ratio: 1.164549e-01	ci left: 8.883886e-04	ci right 9.990429e-04	k: 1131	n:1200000
Cons ci ratio: 1.537433e-02	ci left: 5.099563e-02	ci right 5.178654e-02	k: 61668	n:1200000
KS ci ratio: 8.095694e-02	ci left: 1.871040e-03	ci right 2.029713e-03	k: 2339	n:1200000
APOBEC3H   1200000 perm   1160 sec   (1034 perm/sec)   p_kst 1.949167e-03   p_cons 5.139000e-02   p_joint 9.425000e-04

Joint ci ratio: 1.157917e-01	ci left: 8.914784e-04	ci right 1.001842e-03	k: 1144	n:1210000
Cons ci ratio: 1.531351e-02	ci left: 5.097922e-02	ci right 5.176673e-02	k: 62160	n:1210000
KS ci ratio: 8.063028e-02	ci left: 1.870962e-03	ci right 2.028958e-03	k: 2358	n:1210000
APOBEC3H   1210000 perm   1173 sec   (1032 perm/sec)   p_kst 1.948760e-03   p_cons 5.137190e-02   p_joint 9.454545e-04

Joint ci ratio: 1.153894e-01	ci left: 8.905390e-04	ci right 1.000377e-03	k: 1152	n:1220000
Cons ci ratio: 1.525341e-02	ci left: 5.096310e-02	ci right 5.174723e-02	k: 62652	n:1220000
KS ci ratio: 8.018937e-02	ci left: 1.876509e-03	ci right 2.034067e-03	k: 2384	n:1220000
APOBEC3H   1220000 perm   1185 sec   (1029 perm/sec)   p_kst 1.954098e-03   p_cons 5.135410e-02   p_joint 9.442623e-04

Joint ci ratio: 1.149417e-01	ci left: 8.904051e-04	ci right 9.997717e-04	k: 1161	n:1230000
Cons ci ratio: 1.518729e-02	ci left: 5.099017e-02	ci right 5.177129e-02	k: 63197	n:1230000
KS ci ratio: 7.975561e-02	ci left: 1.881969e-03	ci right 2.039091e-03	k: 2410	n:1230000
APOBEC3H   1230000 perm   1198 sec   (1027 perm/sec)   p_kst 1.959350e-03   p_cons 5.137967e-02   p_joint 9.439024e-04

Joint ci ratio: 1.141097e-01	ci left: 8.965415e-04	ci right 1.005811e-03	k: 1178	n:1240000
Cons ci ratio: 1.512978e-02	ci left: 5.096699e-02	ci right 5.174478e-02	k: 63680	n:1240000
KS ci ratio: 7.932881e-02	ci left: 1.887342e-03	ci right 2.044031e-03	k: 2436	n:1240000
APOBEC3H   1240000 perm   1211 sec   (1024 perm/sec)   p_kst 1.964516e-03   p_cons 5.135484e-02   p_joint 9.500000e-04

Joint ci ratio: 1.135810e-01	ci left: 8.979187e-04	ci right 1.006815e-03	k: 1189	n:1250000
Cons ci ratio: 1.506760e-02	ci left: 5.097847e-02	ci right 5.175321e-02	k: 64206	n:1250000
KS ci ratio: 7.900527e-02	ci left: 1.887927e-03	ci right 2.043995e-03	k: 2456	n:1250000
APOBEC3H   1250000 perm   1224 sec   (1021 perm/sec)   p_kst 1.964800e-03   p_cons 5.136480e-02   p_joint 9.512000e-04

Joint ci ratio: 1.132959e-01	ci left: 8.954190e-04	ci right 1.003721e-03	k: 1195	n:1260000
Cons ci ratio: 1.500765e-02	ci left: 5.098028e-02	ci right 5.175194e-02	k: 64720	n:1260000
KS ci ratio: 7.879730e-02	ci left: 1.883057e-03	ci right 2.038294e-03	k: 2469	n:1260000
APOBEC3H   1260000 perm   1237 sec   (1019 perm/sec)   p_kst 1.959524e-03   p_cons 5.136508e-02   p_joint 9.484127e-04

Joint ci ratio: 1.129659e-01	ci left: 8.937243e-04	ci right 1.001486e-03	k: 1202	n:1270000
Cons ci ratio: 1.494937e-02	ci left: 5.097580e-02	ci right 5.174436e-02	k: 65226	n:1270000
KS ci ratio: 7.855926e-02	ci left: 1.879808e-03	ci right 2.034288e-03	k: 2484	n:1270000
APOBEC3H   1270000 perm   1251 sec   (1015 perm/sec)   p_kst 1.955906e-03   p_cons 5.135906e-02   p_joint 9.464567e-04

Joint ci ratio: 1.125457e-01	ci left: 8.935750e-04	ci right 1.000891e-03	k: 1211	n:1280000
Cons ci ratio: 1.489332e-02	ci left: 5.096126e-02	ci right 5.172671e-02	k: 65719	n:1280000
KS ci ratio: 7.822937e-02	ci left: 1.881207e-03	ci right 2.035123e-03	k: 2505	n:1280000
APOBEC3H   1280000 perm   1266 sec   (1011 perm/sec)   p_kst 1.957031e-03   p_cons 5.134297e-02   p_joint 9.460937e-04

Joint ci ratio: 1.123607e-01	ci left: 8.896615e-04	ci right 9.963205e-04	k: 1215	n:1290000
Cons ci ratio: 1.483058e-02	ci left: 5.099486e-02	ci right 5.175755e-02	k: 66274	n:1290000
KS ci ratio: 7.794997e-02	ci left: 1.880305e-03	ci right 2.033573e-03	k: 2523	n:1290000
APOBEC3H   1290000 perm   1280 sec   (1008 perm/sec)   p_kst 1.955814e-03   p_cons 5.137519e-02   p_joint 9.418605e-04

Joint ci ratio: 1.118558e-01	ci left: 8.910423e-04	ci right 9.973551e-04	k: 1226	n:1300000
Cons ci ratio: 1.477270e-02	ci left: 5.100111e-02	ci right 5.176089e-02	k: 66794	n:1300000
KS ci ratio: 7.770418e-02	ci left: 1.877909e-03	ci right 2.030477e-03	k: 2539	n:1300000
APOBEC3H   1300000 perm   1293 sec   (1005 perm/sec)   p_kst 1.953077e-03   p_cons 5.138000e-02   p_joint 9.430769e-04

Joint ci ratio: 1.115382e-01	ci left: 8.894346e-04	ci right 9.952345e-04	k: 1233	n:1310000
Cons ci ratio: 1.471711e-02	ci left: 5.099662e-02	ci right 5.175346e-02	k: 67300	n:1310000
KS ci ratio: 7.740003e-02	ci left: 1.878545e-03	ci right 2.030541e-03	k: 2559	n:1310000
APOBEC3H   1310000 perm   1307 sec   (1002 perm/sec)   p_kst 1.953435e-03   p_cons 5.137405e-02   p_joint 9.412214e-04

Joint ci ratio: 1.110890e-01	ci left: 8.900613e-04	ci right 9.954815e-04	k: 1243	n:1320000
Cons ci ratio: 1.465986e-02	ci left: 5.100731e-02	ci right 5.176133e-02	k: 67826	n:1320000
KS ci ratio: 7.714439e-02	ci left: 1.876944e-03	ci right 2.028285e-03	k: 2576	n:1320000
APOBEC3H   1320000 perm   1321 sec   (999 perm/sec)   p_kst 1.951515e-03   p_cons 5.138333e-02   p_joint 9.416667e-04

Joint ci ratio: 1.106010e-01	ci left: 8.914106e-04	ci right 9.964965e-04	k: 1254	n:1330000
Cons ci ratio: 1.460643e-02	ci left: 5.099686e-02	ci right 5.174796e-02	k: 68324	n:1330000
KS ci ratio: 7.690612e-02	ci left: 1.874629e-03	ci right 2.025297e-03	k: 2592	n:1330000
APOBEC3H   1330000 perm   1334 sec   (997 perm/sec)   p_kst 1.948872e-03   p_cons 5.137143e-02   p_joint 9.428571e-04

Joint ci ratio: 1.103377e-01	ci left: 8.891121e-04	ci right 9.936613e-04	k: 1260	n:1340000
Cons ci ratio: 1.455135e-02	ci left: 5.100144e-02	ci right 5.174975e-02	k: 68842	n:1340000
KS ci ratio: 7.671424e-02	ci left: 1.870155e-03	ci right 2.020071e-03	k: 2605	n:1340000
APOBEC3H   1340000 perm   1348 sec   (994 perm/sec)   p_kst 1.944030e-03   p_cons 5.137463e-02   p_joint 9.402985e-04

Joint ci ratio: 1.100328e-01	ci left: 8.875683e-04	ci right 9.916289e-04	k: 1267	n:1350000
Cons ci ratio: 1.449920e-02	ci left: 5.099046e-02	ci right 5.173591e-02	k: 69339	n:1350000
KS ci ratio: 7.643612e-02	ci left: 1.870106e-03	ci right 2.019451e-03	k: 2624	n:1350000
APOBEC3H   1350000 perm   1363 sec   (990 perm/sec)   p_kst 1.943704e-03   p_cons 5.136222e-02   p_joint 9.385185e-04

Joint ci ratio: 1.096444e-01	ci left: 8.874779e-04	ci right 9.911369e-04	k: 1276	n:1360000
Cons ci ratio: 1.444510e-02	ci left: 5.099650e-02	ci right 5.173923e-02	k: 69859	n:1360000
KS ci ratio: 7.614657e-02	ci left: 1.870781e-03	ci right 2.019588e-03	k: 2644	n:1360000
APOBEC3H   1360000 perm   1377 sec   (988 perm/sec)   p_kst 1.944118e-03   p_cons 5.136691e-02   p_joint 9.382353e-04

Joint ci ratio: 1.091751e-01	ci left: 8.888095e-04	ci right 9.921511e-04	k: 1287	n:1370000
Cons ci ratio: 1.439107e-02	ci left: 5.100610e-02	ci right 5.174616e-02	k: 70384	n:1370000
KS ci ratio: 7.587455e-02	ci left: 1.870731e-03	ci right 2.018979e-03	k: 2663	n:1370000
APOBEC3H   1370000 perm   1391 sec   (985 perm/sec)   p_kst 1.943796e-03   p_cons 5.137518e-02   p_joint 9.394161e-04

Joint ci ratio: 1.088377e-01	ci left: 8.880079e-04	ci right 9.909167e-04	k: 1295	n:1380000
Cons ci ratio: 1.434126e-02	ci left: 5.099100e-02	ci right 5.172827e-02	k: 70875	n:1380000
KS ci ratio: 7.557721e-02	ci left: 1.872104e-03	ci right 2.019854e-03	k: 2684	n:1380000
APOBEC3H   1380000 perm   1406 sec   (982 perm/sec)   p_kst 1.944928e-03   p_cons 5.135870e-02   p_joint 9.384058e-04

Joint ci ratio: 1.082544e-01	ci left: 8.914179e-04	ci right 9.941330e-04	k: 1309	n:1390000
Cons ci ratio: 1.428995e-02	ci left: 5.098976e-02	ci right 5.172434e-02	k: 71385	n:1390000
KS ci ratio: 7.525548e-02	ci left: 1.874870e-03	ci right 2.022181e-03	k: 2707	n:1390000
APOBEC3H   1390000 perm   1420 sec   (979 perm/sec)   p_kst 1.947482e-03   p_cons 5.135612e-02   p_joint 9.417266e-04

Joint ci ratio: 1.078435e-01	ci left: 8.920005e-04	ci right 9.943679e-04	k: 1319	n:1400000
Cons ci ratio: 1.424077e-02	ci left: 5.097785e-02	ci right 5.170972e-02	k: 71880	n:1400000
KS ci ratio: 7.497909e-02	ci left: 1.875496e-03	ci right 2.022291e-03	k: 2727	n:1400000
APOBEC3H   1400000 perm   1434 sec   (976 perm/sec)   p_kst 1.947857e-03   p_cons 5.134286e-02   p_joint 9.421429e-04

Joint ci ratio: 1.075588e-01	ci left: 8.905050e-04	ci right 9.924139e-04	k: 1326	n:1410000
Cons ci ratio: 1.418867e-02	ci left: 5.098945e-02	ci right 5.171878e-02	k: 72408	n:1410000
KS ci ratio: 7.477392e-02	ci left: 1.872633e-03	ci right 2.018786e-03	k: 2742	n:1410000
APOBEC3H   1410000 perm   1448 sec   (974 perm/sec)   p_kst 1.944681e-03   p_cons 5.135319e-02   p_joint 9.404255e-04

Joint ci ratio: 1.070757e-01	ci left: 8.924578e-04	ci right 9.941024e-04	k: 1338	n:1420000
Cons ci ratio: 1.413653e-02	ci left: 5.100509e-02	ci right 5.173195e-02	k: 72942	n:1420000
KS ci ratio: 7.436807e-02	ci left: 1.880179e-03	ci right 2.026090e-03	k: 2772	n:1420000
APOBEC3H   1420000 perm   1463 sec   (971 perm/sec)   p_kst 1.952113e-03   p_cons 5.136761e-02   p_joint 9.422535e-04

Joint ci ratio: 1.065990e-01	ci left: 8.943842e-04	ci right 9.957664e-04	k: 1350	n:1430000
Cons ci ratio: 1.408668e-02	ci left: 5.100868e-02	ci right 5.173300e-02	k: 73459	n:1430000
KS ci ratio: 7.408803e-02	ci left: 1.881444e-03	ci right 2.026879e-03	k: 2793	n:1430000
APOBEC3H   1430000 perm   1478 sec   (968 perm/sec)   p_kst 1.953147e-03   p_cons 5.136993e-02   p_joint 9.440559e-04

Joint ci ratio: 1.060896e-01	ci left: 8.969609e-04	ci right 9.981191e-04	k: 1363	n:1440000
Cons ci ratio: 1.403626e-02	ci left: 5.101983e-02	ci right 5.174170e-02	k: 73987	n:1440000
KS ci ratio: 7.371934e-02	ci left: 1.887463e-03	ci right 2.032607e-03	k: 2821	n:1440000
APOBEC3H   1440000 perm   1492 sec   (965 perm/sec)   p_kst 1.959028e-03   p_cons 5.137986e-02   p_joint 9.465278e-04

Joint ci ratio: 1.055875e-01	ci left: 8.995033e-04	ci right 1.000438e-03	k: 1376	n:1450000
Cons ci ratio: 1.398934e-02	ci left: 5.101021e-02	ci right 5.172951e-02	k: 74485	n:1450000
KS ci ratio: 7.340774e-02	ci left: 1.890694e-03	ci right 2.035445e-03	k: 2845	n:1450000
APOBEC3H   1450000 perm   1507 sec   (962 perm/sec)   p_kst 1.962069e-03   p_cons 5.136897e-02   p_joint 9.489655e-04

Joint ci ratio: 1.049792e-01	ci left: 9.040127e-04	ci right 1.004833e-03	k: 1392	n:1460000
Cons ci ratio: 1.393955e-02	ci left: 5.102394e-02	ci right 5.174085e-02	k: 75017	n:1460000
KS ci ratio: 7.307455e-02	ci left: 1.895226e-03	ci right 2.039638e-03	k: 2871	n:1460000
APOBEC3H   1460000 perm   1521 sec   (960 perm/sec)   p_kst 1.966438e-03   p_cons 5.138151e-02   p_joint 9.534247e-04

Joint ci ratio: 1.046043e-01	ci left: 9.044874e-04	ci right 1.004978e-03	k: 1402	n:1470000
Cons ci ratio: 1.389088e-02	ci left: 5.103342e-02	ci right 5.174794e-02	k: 75543	n:1470000
KS ci ratio: 7.282142e-02	ci left: 1.895690e-03	ci right 2.039616e-03	k: 2891	n:1470000
APOBEC3H   1470000 perm   1542 sec   (954 perm/sec)   p_kst 1.966667e-03   p_cons 5.138980e-02   p_joint 9.537415e-04

Joint ci ratio: 1.042705e-01	ci left: 9.042983e-04	ci right 1.004428e-03	k: 1411	n:1480000
Cons ci ratio: 1.384098e-02	ci left: 5.105490e-02	ci right 5.176713e-02	k: 76087	n:1480000
KS ci ratio: 7.264594e-02	ci left: 1.892169e-03	ci right 2.035467e-03	k: 2905	n:1480000
APOBEC3H   1480000 perm   1557 sec   (951 perm/sec)   p_kst 1.962838e-03   p_cons 5.141014e-02   p_joint 9.533784e-04

Joint ci ratio: 1.038301e-01	ci left: 9.060733e-04	ci right 1.005950e-03	k: 1423	n:1490000
Cons ci ratio: 1.379305e-02	ci left: 5.106605e-02	ci right 5.177596e-02	k: 76616	n:1490000
KS ci ratio: 7.243444e-02	ci left: 1.890672e-03	ci right 2.033422e-03	k: 2922	n:1490000
APOBEC3H   1490000 perm   1576 sec   (946 perm/sec)   p_kst 1.961074e-03   p_cons 5.142013e-02   p_joint 9.550336e-04

Joint ci ratio: 1.035759e-01	ci left: 9.045784e-04	ci right 1.004031e-03	k: 1430	n:1500000
Cons ci ratio: 1.374776e-02	ci left: 5.106179e-02	ci right 5.176928e-02	k: 77122	n:1500000
KS ci ratio: 7.231109e-02	ci left: 1.884614e-03	ci right 2.026654e-03	k: 2932	n:1500000
APOBEC3H   1500000 perm   1594 sec   (941 perm/sec)   p_kst 1.954667e-03   p_cons 5.141467e-02   p_joint 9.533333e-04

Joint ci ratio: 1.031443e-01	ci left: 9.063294e-04	ci right 1.005534e-03	k: 1442	n:1510000
Cons ci ratio: 1.369976e-02	ci left: 5.108002e-02	ci right 5.178528e-02	k: 77662	n:1510000
KS ci ratio: 7.205356e-02	ci left: 1.885789e-03	ci right 2.027390e-03	k: 2953	n:1510000
APOBEC3H   1510000 perm   1613 sec   (936 perm/sec)   p_kst 1.955629e-03   p_cons 5.143179e-02   p_joint 9.549669e-04

Joint ci ratio: 1.028596e-01	ci left: 9.054943e-04	ci right 1.004318e-03	k: 1450	n:1520000
Cons ci ratio: 1.365640e-02	ci left: 5.106851e-02	ci right 5.177136e-02	k: 78157	n:1520000
KS ci ratio: 7.177460e-02	ci left: 1.888242e-03	ci right 2.029456e-03	k: 2976	n:1520000
APOBEC3H   1520000 perm   1633 sec   (931 perm/sec)   p_kst 1.957895e-03   p_cons 5.141908e-02   p_joint 9.539474e-04

Joint ci ratio: 1.025421e-01	ci left: 9.053073e-04	ci right 1.003787e-03	k: 1459	n:1530000
Cons ci ratio: 1.361099e-02	ci left: 5.107474e-02	ci right 5.177532e-02	k: 78679	n:1530000
KS ci ratio: 7.155863e-02	ci left: 1.887455e-03	ci right 2.028167e-03	k: 2994	n:1530000
APOBEC3H   1530000 perm   1654 sec   (925 perm/sec)   p_kst 1.956863e-03   p_cons 5.142418e-02   p_joint 9.535948e-04

Joint ci ratio: 1.023322e-01	ci left: 9.032249e-04	ci right 1.001265e-03	k: 1465	n:1540000
Cons ci ratio: 1.356657e-02	ci left: 5.107702e-02	ci right 5.177532e-02	k: 79195	n:1540000
KS ci ratio: 7.145160e-02	ci left: 1.880938e-03	ci right 2.020946e-03	k: 3003	n:1540000
APOBEC3H   1540000 perm   1669 sec   (923 perm/sec)   p_kst 1.950000e-03   p_cons 5.142532e-02   p_joint 9.512987e-04

Joint ci ratio: 1.020888e-01	ci left: 9.017983e-04	ci right 9.994367e-04	k: 1472	n:1550000
Cons ci ratio: 1.352419e-02	ci left: 5.106769e-02	ci right 5.176367e-02	k: 79693	n:1550000
KS ci ratio: 7.127398e-02	ci left: 1.878307e-03	ci right 2.017758e-03	k: 3018	n:1550000
APOBEC3H   1550000 perm   1685 sec   (920 perm/sec)   p_kst 1.947097e-03   p_cons 5.141484e-02   p_joint 9.496774e-04

Joint ci ratio: 1.018816e-01	ci left: 8.997655e-04	ci right 9.969743e-04	k: 1478	n:1560000
Cons ci ratio: 1.347990e-02	ci left: 5.107509e-02	ci right 5.176888e-02	k: 80217	n:1560000
KS ci ratio: 7.105076e-02	ci left: 1.878230e-03	ci right 2.017220e-03	k: 3037	n:1560000
APOBEC3H   1560000 perm   1700 sec   (918 perm/sec)   p_kst 1.946795e-03   p_cons 5.142115e-02   p_joint 9.474359e-04

Joint ci ratio: 1.014367e-01	ci left: 9.021043e-04	ci right 9.991148e-04	k: 1491	n:1570000
Cons ci ratio: 1.343639e-02	ci left: 5.107987e-02	ci right 5.177147e-02	k: 80737	n:1570000
KS ci ratio: 7.074852e-02	ci left: 1.882533e-03	ci right 2.021225e-03	k: 3063	n:1570000
APOBEC3H   1570000 perm   1716 sec   (915 perm/sec)   p_kst 1.950955e-03   p_cons 5.142484e-02   p_joint 9.496815e-04

Joint ci ratio: 1.008635e-01	ci left: 9.068822e-04	ci right 1.003823e-03	k: 1508	n:1580000
Cons ci ratio: 1.339166e-02	ci left: 5.109658e-02	ci right 5.178608e-02	k: 81276	n:1580000
KS ci ratio: 7.042726e-02	ci left: 1.888028e-03	ci right 2.026466e-03	k: 3091	n:1580000
APOBEC3H   1580000 perm   1731 sec   (913 perm/sec)   p_kst 1.956329e-03   p_cons 5.144051e-02   p_joint 9.544304e-04

Joint ci ratio: 1.003987e-01	ci left: 9.097621e-04	ci right 1.006536e-03	k: 1522	n:1590000
Cons ci ratio: 1.334753e-02	ci left: 5.111183e-02	ci right 5.179924e-02	k: 81813	n:1590000
KS ci ratio: 7.009909e-02	ci left: 1.894072e-03	ci right 2.032280e-03	k: 3120	n:1590000
APOBEC3H   1590000 perm   1747 sec   (910 perm/sec)   p_kst 1.962264e-03   p_cons 5.145472e-02   p_joint 9.572327e-04

Joint ci ratio: 1.000706e-01	ci left: 9.101694e-04	ci right 1.006652e-03	k: 1532	n:1600000
Cons ci ratio: 1.330419e-02	ci left: 5.112440e-02	ci right 5.180973e-02	k: 82346	n:1600000
KS ci ratio: 6.988670e-02	ci left: 1.893901e-03	ci right 2.031662e-03	k: 3139	n:1600000
APOBEC3H   1600000 perm   1762 sec   (908 perm/sec)   p_kst 1.961875e-03   p_cons 5.146625e-02   p_joint 9.575000e-04

Joint ci ratio: 9.990799e-02	ci left: 9.075440e-04	ci right 1.003582e-03	k: 1537	n:1610000
Cons ci ratio: 1.326354e-02	ci left: 5.112009e-02	ci right 5.180326e-02	k: 82852	n:1610000
KS ci ratio: 6.966518e-02	ci left: 1.894343e-03	ci right 2.031682e-03	k: 3159	n:1610000
APOBEC3H   1610000 perm   1778 sec   (906 perm/sec)   p_kst 1.962112e-03   p_cons 5.146087e-02   p_joint 9.546584e-04

Outputting figure to mutsig2_images.part000000000009/APOBEC3H.2_632_1610000_0.0019621_0.051461_0.00095466.png
                gene_name: APOBEC3H
               theta_stop: 0.100 
                    nperm: 1610000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.00095 
     ci_joint_bounds_left: 0.00091 
    ci_joint_bounds_right: 0.0010 

Current progress: 94 percent done.
APOL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
Cons ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
KS ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
APOL3   10000 perm   2 sec   (6473 perm/sec)   p_kst 7.158000e-01   p_cons 2.969000e-01   p_joint 7.491000e-01

Outputting figure to mutsig2_images.part000000000009/APOL3.2_1221_10000_0.7158_0.2969_0.7491.png
                gene_name: APOL3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 96 percent done.
APOL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
APOL6   10000 perm   2 sec   (6587 perm/sec)   p_kst 8.833000e-01   p_cons 8.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOL6.2_1040_10000_0.8833_0.8393_1.png
                gene_name: APOL6
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
AQP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
KS ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
AQP1   10000 perm   1 sec   (6934 perm/sec)   p_kst 5.439000e-01   p_cons 1.296000e-01   p_joint 7.188000e-01

Joint ci ratio: 1.269372e-02	ci left: 8.213313e-01	ci right 8.318736e-01	k: 16533	n:20000
Cons ci ratio: 7.083112e-02	ci left: 1.280762e-01	ci right 1.375308e-01	k: 2655	n:20000
KS ci ratio: 2.547602e-02	ci left: 5.351143e-01	ci right 5.489734e-01	k: 10841	n:20000
AQP1   20000 perm   3 sec   (6013 perm/sec)   p_kst 5.420500e-01   p_cons 1.327500e-01   p_joint 8.266500e-01

Outputting figure to mutsig2_images.part000000000009/AQP1.2_1083_20000_0.54205_0.13275_0.82665.png
                gene_name: AQP1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000009
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 9 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 4421706: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000010> was used as the working directory.
Started at Wed Oct 24 17:30:10 2012
Results reported at Wed Oct 24 18:13:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000010.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000010.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 10  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000010.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2667.40 sec.
    Max Memory :      5390 MB
    Max Swap   :      7712 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
10
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 10
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 10: processing genes 815 - 905
Calculating significance of each gene.
Using projection method.
815	AQP12A	5.272985e-01
816	AQP12B	2.351895e-01
817	AQP2	5.595566e-01
818	AQP3	7.443380e-01
819	AQP4	1
820	AQP5	1
821	AQP6	5.702160e-01
822	AQP7	1
823	AQP8	1
824	AQP9	7.920069e-03
825	AQPEP	3.515903e-01
826	AQR	1.850751e-01
827	AR	1
828	ARAF	5.958350e-01
829	ARAP1	7.369752e-01
830	ARAP2	6.105911e-02
831	ARAP3	7.669968e-01
832	ARC	8.034208e-01
833	ARCN1	1
834	AREG	1
835	ARF1	1
836	ARF3	7.405527e-01
837	ARF4	6.830782e-01
838	ARF5	4.253579e-01
839	ARF6	1
840	ARFGAP1	6.696948e-01
841	ARFGAP2	5.193631e-01
842	ARFGAP3	6.374443e-01
843	ARFGEF1	9.998676e-01
844	ARFGEF2	9.876137e-01
845	ARFIP1	5.227120e-01
846	ARFIP2	1.767261e-01
847	ARFRP1	1
848	ARG1	7.494895e-01
849	ARG2	1
850	ARGFX	4.825596e-01
851	ARGLU1	5.347561e-01
852	ARHGAP1	4.162624e-01
853	ARHGAP10	6.064369e-01
854	ARHGAP11A	8.724410e-01
855	ARHGAP11B	1
856	ARHGAP12	4.863479e-01
857	ARHGAP15	4.120582e-02
858	ARHGAP17	7.190935e-01
859	ARHGAP18	9.606572e-01
860	ARHGAP19	7.077398e-01
861	ARHGAP20	3.700229e-01
862	ARHGAP21	2.781130e-01
863	ARHGAP22	9.156844e-01
864	ARHGAP24	1
865	ARHGAP25	4.954961e-01
866	ARHGAP26	1
867	ARHGAP27	4.876425e-02
868	ARHGAP28	1
869	ARHGAP29	9.941181e-01
870	ARHGAP30	8.504679e-01
871	ARHGAP31	9.999039e-01
872	ARHGAP32	7.400323e-01
873	ARHGAP33	7.942074e-01
874	ARHGAP36	2.778165e-05
875	ARHGAP39	1
876	ARHGAP4	8.463131e-01
877	ARHGAP5	9.799217e-01
878	ARHGAP6	9.651595e-01
879	ARHGAP8	1
880	ARHGAP9	2.255242e-01
881	ARHGDIA	1
882	ARHGDIB	1
883	ARHGDIG	1
884	ARHGEF1	9.652319e-01
885	ARHGEF10	9.998188e-01
886	ARHGEF10L	5.708572e-01
887	ARHGEF11	8.290018e-01
888	ARHGEF12	3.916707e-01
889	ARHGEF15	6.646578e-01
890	ARHGEF16	8.859829e-01
891	ARHGEF17	9.816324e-01
892	ARHGEF18	9.860169e-01
893	ARHGEF19	9.743376e-01
894	ARHGEF2	5.211068e-01
895	ARHGEF3	6.121209e-02
896	ARHGEF35	5.196090e-01
897	ARHGEF37	2.624669e-01
898	ARHGEF38	2.395937e-01
899	ARHGEF4	6.661811e-01
900	ARHGEF5	8.295300e-01
901	ARHGEF6	1.789013e-02
902	ARHGEF7	9.457913e-01
903	ARHGEF9	5.567454e-01
904	ARID1A	1.634342e-01
905	ARID1B	9.326707e-01
Done

Running MutSig 2:
Scatter job 10: processing genes 815 - 905
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
ARAP2   10000 perm   3 sec   (3787 perm/sec)   p_kst 2.268000e-01   p_cons 1.749000e-01   p_joint 2.281000e-01

Outputting figure to mutsig2_images.part000000000010/ARAP2.17_5243_10000_0.2268_0.1749_0.2281.png
                gene_name: ARAP2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
ARHGAP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
Cons ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
KS ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
ARHGAP36   10000 perm   2 sec   (4958 perm/sec)   p_kst 9.131000e-01   p_cons 5.053000e-01   p_joint 8.718000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP36.17_1688_10000_0.9131_0.5053_0.8718.png
                gene_name: ARHGAP36
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 3 percent done.
ARHGAP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
Cons ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
ARHGAP32   10000 perm   3 sec   (3775 perm/sec)   p_kst 3.274000e-01   p_cons 2.558000e-01   p_joint 3.442000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP32.16_6352_10000_0.3274_0.2558_0.3442.png
                gene_name: ARHGAP32
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 5 percent done.
ARID1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
Cons ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
ARID1A   10000 perm   3 sec   (3552 perm/sec)   p_kst 5.099000e-01   p_cons 4.820000e-01   p_joint 7.105000e-01

Outputting figure to mutsig2_images.part000000000010/ARID1A.15_6938_10000_0.5099_0.482_0.7105.png
                gene_name: ARID1A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 6 percent done.
AQPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 3.316938e-02	ci left: 5.729622e-01	ci right 5.923896e-01	k: 5827	n:10000
KS ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
AQPEP   10000 perm   2 sec   (4703 perm/sec)   p_kst 1.180000e-02   p_cons 5.827000e-01   p_joint 3.700000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 2.343396e-02	ci left: 5.762803e-01	ci right 5.899955e-01	k: 11663	n:20000
KS ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
AQPEP   20000 perm   5 sec   (4287 perm/sec)   p_kst 1.115000e-02   p_cons 5.831500e-01   p_joint 3.410000e-02

Joint ci ratio: 1.177938e-01	ci left: 3.349930e-02	ci right 3.772459e-02	k: 1067	n:30000
Cons ci ratio: 1.951246e-02	ci left: 5.679801e-01	ci right 5.792056e-01	k: 17208	n:30000
KS ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
AQPEP   30000 perm   7 sec   (4113 perm/sec)   p_kst 1.166667e-02   p_cons 5.736000e-01   p_joint 3.556667e-02

Joint ci ratio: 1.055207e-01	ci left: 3.158754e-02	ci right 3.513063e-02	k: 1333	n:40000
Cons ci ratio: 1.690710e-02	ci left: 5.684854e-01	ci right 5.782039e-01	k: 22934	n:40000
KS ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
AQPEP   40000 perm   10 sec   (4003 perm/sec)   p_kst 1.157500e-02   p_cons 5.733500e-01   p_joint 3.332500e-02

Joint ci ratio: 1.008679e-01	ci left: 2.783916e-02	ci right 3.081582e-02	k: 1465	n:50000
Cons ci ratio: 1.513060e-02	ci left: 5.687303e-01	ci right 5.774212e-01	k: 28654	n:50000
KS ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
AQPEP   50000 perm   13 sec   (3915 perm/sec)   p_kst 1.186000e-02   p_cons 5.730800e-01   p_joint 2.930000e-02

Joint ci ratio: 9.235573e-02	ci left: 2.780212e-02	ci right 3.051035e-02	k: 1748	n:60000
Cons ci ratio: 1.383908e-02	ci left: 5.681627e-01	ci right 5.760970e-01	k: 34328	n:60000
KS ci ratio: 1.443996e-01	ci left: 1.125657e-02	ci right 1.302442e-02	k: 727	n:60000
AQPEP   60000 perm   16 sec   (3844 perm/sec)   p_kst 1.211667e-02   p_cons 5.721333e-01   p_joint 2.913333e-02

Joint ci ratio: 8.547253e-02	ci left: 2.792318e-02	ci right 3.043034e-02	k: 2041	n:70000
Cons ci ratio: 1.280444e-02	ci left: 5.687679e-01	ci right 5.761118e-01	k: 40071	n:70000
KS ci ratio: 1.315363e-01	ci left: 1.170389e-02	ci right 1.336545e-02	k: 876	n:70000
AQPEP   70000 perm   19 sec   (3781 perm/sec)   p_kst 1.251429e-02   p_cons 5.724429e-01   p_joint 2.915714e-02

Joint ci ratio: 7.998256e-02	ci left: 2.798286e-02	ci right 3.032645e-02	k: 2331	n:80000
Cons ci ratio: 1.197853e-02	ci left: 5.689629e-01	ci right 5.758318e-01	k: 45792	n:80000
KS ci ratio: 1.219542e-01	ci left: 1.197189e-02	ci right 1.353875e-02	k: 1019	n:80000
AQPEP   80000 perm   22 sec   (3721 perm/sec)   p_kst 1.273750e-02   p_cons 5.724000e-01   p_joint 2.913750e-02

Joint ci ratio: 7.537135e-02	ci left: 2.807694e-02	ci right 3.028688e-02	k: 2625	n:90000
Cons ci ratio: 1.127991e-02	ci left: 5.697494e-01	ci right 5.762237e-01	k: 51569	n:90000
KS ci ratio: 1.112346e-01	ci left: 1.285345e-02	ci right 1.437813e-02	k: 1224	n:90000
AQPEP   90000 perm   25 sec   (3664 perm/sec)   p_kst 1.360000e-02   p_cons 5.729889e-01   p_joint 2.916667e-02

Joint ci ratio: 7.303619e-02	ci left: 2.697639e-02	ci right 2.903111e-02	k: 2799	n:100000
Cons ci ratio: 1.070061e-02	ci left: 5.699372e-01	ci right 5.760786e-01	k: 57301	n:100000
KS ci ratio: 1.051010e-01	ci left: 1.299841e-02	ci right 1.445000e-02	k: 1371	n:100000
AQPEP   100000 perm   28 sec   (3611 perm/sec)   p_kst 1.371000e-02   p_cons 5.730100e-01   p_joint 2.799000e-02

Joint ci ratio: 7.230144e-02	ci left: 2.508542e-02	ci right 2.697605e-02	k: 2862	n:110000
Cons ci ratio: 1.020020e-02	ci left: 5.701978e-01	ci right 5.760528e-01	k: 63044	n:110000
KS ci ratio: 9.998182e-02	ci left: 1.309229e-02	ci right 1.447897e-02	k: 1515	n:110000
AQPEP   110000 perm   31 sec   (3553 perm/sec)   p_kst 1.377273e-02   p_cons 5.731273e-01   p_joint 2.601818e-02

Outputting figure to mutsig2_images.part000000000010/AQPEP.13_3053_110000_0.013773_0.57313_0.026018.png
                gene_name: AQPEP
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 8 percent done.
ARHGAP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.144615e-02	ci left: 5.987528e-01	ci right 6.179840e-01	k: 6084	n:10000
Cons ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
KS ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
ARHGAP21   10000 perm   2 sec   (4064 perm/sec)   p_kst 4.083000e-01   p_cons 4.466000e-01   p_joint 6.084000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP21.13_5977_10000_0.4083_0.4466_0.6084.png
                gene_name: ARHGAP21
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 9 percent done.
ARID1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
ARID1B   10000 perm   3 sec   (3756 perm/sec)   p_kst 1.369000e-01   p_cons 2.100000e-03   p_joint 1.070000e-02

Joint ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
Cons ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KS ci ratio: 6.930433e-02	ci left: 1.331001e-01	ci right 1.427054e-01	k: 2757	n:20000
ARID1B   20000 perm   6 sec   (3466 perm/sec)   p_kst 1.378500e-01   p_cons 2.250000e-03   p_joint 7.350000e-03

Joint ci ratio: 3.571231e-01	ci left: 3.287119e-03	ci right 4.744855e-03	k: 119	n:30000
Cons ci ratio: 4.713617e-01	ci left: 1.760572e-03	ci right 2.872668e-03	k: 68	n:30000
KS ci ratio: 5.693073e-02	ci left: 1.325679e-01	ci right 1.403694e-01	k: 4093	n:30000
ARID1B   30000 perm   9 sec   (3334 perm/sec)   p_kst 1.364333e-01   p_cons 2.266667e-03   p_joint 3.966667e-03

Joint ci ratio: 2.210564e-01	ci left: 6.937641e-03	ci right 8.684950e-03	k: 311	n:40000
Cons ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
KS ci ratio: 4.660670e-02	ci left: 1.467613e-01	ci right 1.537895e-01	k: 6010	n:40000
ARID1B   40000 perm   12 sec   (3260 perm/sec)   p_kst 1.502500e-01   p_cons 2.275000e-03   p_joint 7.775000e-03

Joint ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
Cons ci ratio: 3.619763e-01	ci left: 1.917428e-03	ci right 2.781975e-03	k: 116	n:50000
KS ci ratio: 4.180019e-02	ci left: 1.464444e-01	ci right 1.527164e-01	k: 7478	n:50000
ARID1B   50000 perm   16 sec   (3192 perm/sec)   p_kst 1.495600e-01   p_cons 2.320000e-03   p_joint 6.680000e-03

Joint ci ratio: 2.074339e-01	ci left: 5.302872e-03	ci right 6.545650e-03	k: 354	n:60000
Cons ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
KS ci ratio: 3.821280e-02	ci left: 1.463579e-01	ci right 1.520761e-01	k: 8952	n:60000
ARID1B   60000 perm   19 sec   (3143 perm/sec)   p_kst 1.492000e-01   p_cons 2.316667e-03   p_joint 5.900000e-03

Joint ci ratio: 2.018836e-01	ci left: 4.816266e-03	ci right 5.911065e-03	k: 374	n:70000
Cons ci ratio: 3.020693e-01	ci left: 2.037936e-03	ci right 2.775708e-03	k: 167	n:70000
KS ci ratio: 3.538252e-02	ci left: 1.465397e-01	ci right 1.518322e-01	k: 10442	n:70000
ARID1B   70000 perm   23 sec   (3101 perm/sec)   p_kst 1.491714e-01   p_cons 2.385714e-03   p_joint 5.342857e-03

Joint ci ratio: 2.033180e-01	ci left: 4.154756e-03	ci right 5.106717e-03	k: 369	n:80000
Cons ci ratio: 2.855575e-01	ci left: 2.014779e-03	ci right 2.697113e-03	k: 187	n:80000
KS ci ratio: 3.310526e-02	ci left: 1.466507e-01	ci right 1.515998e-01	k: 11929	n:80000
ARID1B   80000 perm   26 sec   (3056 perm/sec)   p_kst 1.491125e-01   p_cons 2.337500e-03   p_joint 4.612500e-03

Joint ci ratio: 1.945880e-01	ci left: 4.052060e-03	ci right 4.935901e-03	k: 403	n:90000
Cons ci ratio: 2.701884e-01	ci left: 2.018339e-03	ci right 2.658858e-03	k: 209	n:90000
KS ci ratio: 3.123965e-02	ci left: 1.465690e-01	ci right 1.512314e-01	k: 13400	n:90000
ARID1B   90000 perm   30 sec   (3017 perm/sec)   p_kst 1.488889e-01   p_cons 2.322222e-03   p_joint 4.477778e-03

Joint ci ratio: 1.913314e-01	ci left: 3.780038e-03	ci right 4.589136e-03	k: 417	n:100000
Cons ci ratio: 2.581784e-01	ci left: 2.003263e-03	ci right 2.606186e-03	k: 229	n:100000
KS ci ratio: 2.960152e-02	ci left: 1.469870e-01	ci right 1.514133e-01	k: 14919	n:100000
ARID1B   100000 perm   34 sec   (2979 perm/sec)   p_kst 1.491900e-01   p_cons 2.290000e-03   p_joint 4.170000e-03

Joint ci ratio: 1.517800e-01	ci left: 5.569639e-03	ci right 6.493061e-03	k: 662	n:110000
Cons ci ratio: 2.491423e-01	ci left: 1.965866e-03	ci right 2.533615e-03	k: 246	n:110000
KS ci ratio: 2.821284e-02	ci left: 1.471896e-01	ci right 1.514107e-01	k: 16422	n:110000
ARID1B   110000 perm   37 sec   (2944 perm/sec)   p_kst 1.492909e-01   p_cons 2.236364e-03   p_joint 6.018182e-03

Joint ci ratio: 1.381296e-01	ci left: 6.205981e-03	ci right 7.134768e-03	k: 799	n:120000
Cons ci ratio: 2.241722e-01	ci left: 2.256834e-03	ci right 2.834293e-03	k: 304	n:120000
KS ci ratio: 2.708910e-02	ci left: 1.465587e-01	ci right 1.505916e-01	k: 17828	n:120000
ARID1B   120000 perm   41 sec   (2909 perm/sec)   p_kst 1.485667e-01   p_cons 2.533333e-03   p_joint 6.658333e-03

Joint ci ratio: 1.366272e-01	ci left: 5.862229e-03	ci right 6.729246e-03	k: 817	n:130000
Cons ci ratio: 2.171697e-01	ci left: 2.228571e-03	ci right 2.778610e-03	k: 324	n:130000
KS ci ratio: 2.598038e-02	ci left: 1.470836e-01	ci right 1.509628e-01	k: 19372	n:130000
ARID1B   130000 perm   45 sec   (2875 perm/sec)   p_kst 1.490154e-01   p_cons 2.492308e-03   p_joint 6.284615e-03

Joint ci ratio: 1.381091e-01	ci left: 5.326140e-03	ci right 6.123113e-03	k: 800	n:140000
Cons ci ratio: 2.092700e-01	ci left: 2.238427e-03	ci right 2.768228e-03	k: 349	n:140000
KS ci ratio: 2.506372e-02	ci left: 1.468684e-01	ci right 1.506033e-01	k: 20822	n:140000
ARID1B   140000 perm   49 sec   (2842 perm/sec)   p_kst 1.487286e-01   p_cons 2.492857e-03   p_joint 5.714286e-03

Joint ci ratio: 1.462494e-01	ci left: 4.417955e-03	ci right 5.121398e-03	k: 714	n:150000
Cons ci ratio: 2.029897e-01	ci left: 2.228295e-03	ci right 2.737907e-03	k: 371	n:150000
KS ci ratio: 2.418481e-02	ci left: 1.472346e-01	ci right 1.508456e-01	k: 22355	n:150000
ARID1B   150000 perm   53 sec   (2812 perm/sec)   p_kst 1.490333e-01   p_cons 2.473333e-03   p_joint 4.760000e-03

Joint ci ratio: 1.512383e-01	ci left: 3.864946e-03	ci right 4.503227e-03	k: 668	n:160000
Cons ci ratio: 1.974942e-01	ci left: 2.213695e-03	ci right 2.704612e-03	k: 392	n:160000
KS ci ratio: 2.343556e-02	ci left: 1.470905e-01	ci right 1.505847e-01	k: 23813	n:160000
ARID1B   160000 perm   57 sec   (2785 perm/sec)   p_kst 1.488312e-01   p_cons 2.450000e-03   p_joint 4.175000e-03

Joint ci ratio: 1.504687e-01	ci left: 3.677191e-03	ci right 4.281095e-03	k: 675	n:170000
Cons ci ratio: 1.908118e-01	ci left: 2.240182e-03	ci right 2.718214e-03	k: 420	n:170000
KS ci ratio: 2.275241e-02	ci left: 1.469591e-01	ci right 1.503470e-01	k: 25270	n:170000
ARID1B   170000 perm   62 sec   (2756 perm/sec)   p_kst 1.486471e-01   p_cons 2.470588e-03   p_joint 3.970588e-03

Joint ci ratio: 1.462052e-01	ci left: 3.686879e-03	ci right 4.273719e-03	k: 715	n:180000
Cons ci ratio: 1.860150e-01	ci left: 2.232184e-03	ci right 2.695184e-03	k: 442	n:180000
KS ci ratio: 2.215005e-02	ci left: 1.465671e-01	ci right 1.498554e-01	k: 26677	n:180000
ARID1B   180000 perm   66 sec   (2726 perm/sec)   p_kst 1.482056e-01   p_cons 2.455556e-03   p_joint 3.972222e-03

Joint ci ratio: 1.284349e-01	ci left: 4.565486e-03	ci right 5.197134e-03	k: 926	n:190000
Cons ci ratio: 1.786961e-01	ci left: 2.300558e-03	ci right 2.756936e-03	k: 479	n:190000
KS ci ratio: 2.157282e-02	ci left: 1.464532e-01	ci right 1.496523e-01	k: 28129	n:190000
ARID1B   190000 perm   70 sec   (2697 perm/sec)   p_kst 1.480474e-01   p_cons 2.521053e-03   p_joint 4.873684e-03

Joint ci ratio: 1.253631e-01	ci left: 4.559910e-03	ci right 5.174576e-03	k: 972	n:200000
Cons ci ratio: 1.738721e-01	ci left: 2.314576e-03	ci right 2.760038e-03	k: 506	n:200000
KS ci ratio: 2.102889e-02	ci left: 1.464663e-01	ci right 1.495840e-01	k: 29604	n:200000
ARID1B   200000 perm   75 sec   (2669 perm/sec)   p_kst 1.480200e-01   p_cons 2.530000e-03   p_joint 4.860000e-03

Joint ci ratio: 1.054062e-01	ci left: 6.197841e-03	ci right 6.892076e-03	k: 1373	n:210000
Cons ci ratio: 1.711956e-01	ci left: 2.277254e-03	ci right 2.708090e-03	k: 522	n:210000
KS ci ratio: 2.082104e-02	ci left: 1.429087e-01	ci right 1.459202e-01	k: 30326	n:210000
ARID1B   210000 perm   80 sec   (2637 perm/sec)   p_kst 1.444095e-01   p_cons 2.485714e-03   p_joint 6.538095e-03

Joint ci ratio: 1.056156e-01	ci left: 5.893944e-03	ci right 6.555530e-03	k: 1368	n:220000
Cons ci ratio: 1.667880e-01	ci left: 2.295635e-03	ci right 2.717643e-03	k: 550	n:220000
KS ci ratio: 2.035062e-02	ci left: 1.428431e-01	ci right 1.457844e-01	k: 31748	n:220000
ARID1B   220000 perm   84 sec   (2611 perm/sec)   p_kst 1.443091e-01   p_cons 2.500000e-03   p_joint 6.218182e-03

Joint ci ratio: 1.037042e-01	ci left: 5.853614e-03	ci right 6.498056e-03	k: 1419	n:230000
Cons ci ratio: 1.648589e-01	ci left: 2.249996e-03	ci right 2.658356e-03	k: 563	n:230000
KS ci ratio: 1.991247e-02	ci left: 1.427623e-01	ci right 1.456380e-01	k: 33165	n:230000
ARID1B   230000 perm   89 sec   (2587 perm/sec)   p_kst 1.441957e-01   p_cons 2.447826e-03   p_joint 6.169565e-03

Joint ci ratio: 1.072707e-01	ci left: 5.236401e-03	ci right 5.833969e-03	k: 1327	n:240000
Cons ci ratio: 1.615974e-01	ci left: 2.248165e-03	ci right 2.647336e-03	k: 586	n:240000
KS ci ratio: 1.947579e-02	ci left: 1.430126e-01	ci right 1.458294e-01	k: 34660	n:240000
ARID1B   240000 perm   94 sec   (2563 perm/sec)   p_kst 1.444167e-01   p_cons 2.441667e-03   p_joint 5.529167e-03

Joint ci ratio: 1.110889e-01	ci left: 4.680589e-03	ci right 5.234984e-03	k: 1238	n:250000
Cons ci ratio: 1.597075e-01	ci left: 2.211984e-03	ci right 2.599696e-03	k: 600	n:250000
KS ci ratio: 1.983676e-02	ci left: 1.337583e-01	ci right 1.364422e-01	k: 33774	n:250000
ARID1B   250000 perm   98 sec   (2540 perm/sec)   p_kst 1.350960e-01   p_cons 2.400000e-03   p_joint 4.952000e-03

Joint ci ratio: 1.098591e-01	ci left: 4.605273e-03	ci right 5.144317e-03	k: 1266	n:260000
Cons ci ratio: 1.567369e-01	ci left: 2.211866e-03	ci right 2.591669e-03	k: 623	n:260000
KS ci ratio: 1.945507e-02	ci left: 1.337423e-01	ci right 1.363736e-01	k: 35114	n:260000
ARID1B   260000 perm   103 sec   (2516 perm/sec)   p_kst 1.350538e-01   p_cons 2.396154e-03   p_joint 4.869231e-03

Joint ci ratio: 1.084590e-01	ci left: 4.553586e-03	ci right 5.079353e-03	k: 1299	n:270000
Cons ci ratio: 1.539261e-01	ci left: 2.211820e-03	ci right 2.584175e-03	k: 646	n:270000
KS ci ratio: 1.908279e-02	ci left: 1.338717e-01	ci right 1.364546e-01	k: 36493	n:270000
ARID1B   270000 perm   108 sec   (2491 perm/sec)   p_kst 1.351593e-01   p_cons 2.392593e-03   p_joint 4.811111e-03

Joint ci ratio: 1.070303e-01	ci left: 4.512584e-03	ci right 5.026321e-03	k: 1334	n:280000
Cons ci ratio: 1.518302e-01	ci left: 2.194651e-03	ci right 2.558628e-03	k: 664	n:280000
KS ci ratio: 1.875200e-02	ci left: 1.337327e-01	ci right 1.362677e-01	k: 37799	n:280000
ARID1B   280000 perm   113 sec   (2468 perm/sec)   p_kst 1.349964e-01   p_cons 2.371429e-03   p_joint 4.764286e-03

Joint ci ratio: 1.047011e-01	ci left: 4.558401e-03	ci right 5.065366e-03	k: 1394	n:290000
Cons ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
KS ci ratio: 1.843375e-02	ci left: 1.336552e-01	ci right 1.361452e-01	k: 39120	n:290000
ARID1B   290000 perm   119 sec   (2445 perm/sec)   p_kst 1.348966e-01   p_cons 2.368966e-03   p_joint 4.806897e-03

Joint ci ratio: 1.035962e-01	ci left: 4.503843e-03	ci right 4.999132e-03	k: 1424	n:300000
Cons ci ratio: 1.471484e-01	ci left: 2.186313e-03	ci right 2.536744e-03	k: 707	n:300000
KS ci ratio: 1.811952e-02	ci left: 1.337326e-01	ci right 1.361812e-01	k: 40486	n:300000
ARID1B   300000 perm   124 sec   (2423 perm/sec)   p_kst 1.349533e-01   p_cons 2.356667e-03   p_joint 4.746667e-03

Joint ci ratio: 1.064562e-01	ci left: 4.122933e-03	ci right 4.589633e-03	k: 1349	n:310000
Cons ci ratio: 1.456160e-01	ci left: 2.162400e-03	ci right 2.505074e-03	k: 722	n:310000
KS ci ratio: 1.781050e-02	ci left: 1.339403e-01	ci right 1.363504e-01	k: 41894	n:310000
ARID1B   310000 perm   129 sec   (2400 perm/sec)   p_kst 1.351419e-01   p_cons 2.329032e-03   p_joint 4.351613e-03

Joint ci ratio: 1.050277e-01	ci left: 4.106657e-03	ci right 4.564891e-03	k: 1386	n:320000
Cons ci ratio: 1.434502e-01	ci left: 2.161089e-03	ci right 2.498025e-03	k: 744	n:320000
KS ci ratio: 1.753245e-02	ci left: 1.339267e-01	ci right 1.362986e-01	k: 43235	n:320000
ARID1B   320000 perm   135 sec   (2379 perm/sec)   p_kst 1.351094e-01   p_cons 2.325000e-03   p_joint 4.331250e-03

Joint ci ratio: 9.125497e-02	ci left: 5.306767e-03	ci right 5.817126e-03	k: 1834	n:330000
Cons ci ratio: 1.415633e-01	ci left: 2.154046e-03	ci right 2.485094e-03	k: 764	n:330000
KS ci ratio: 1.727443e-02	ci left: 1.338146e-01	ci right 1.361493e-01	k: 44543	n:330000
ARID1B   330000 perm   140 sec   (2357 perm/sec)   p_kst 1.349788e-01   p_cons 2.315152e-03   p_joint 5.557576e-03

Joint ci ratio: 9.290565e-02	ci left: 4.966744e-03	ci right 5.453512e-03	k: 1770	n:340000
Cons ci ratio: 1.398383e-01	ci left: 2.144606e-03	ci right 2.469852e-03	k: 783	n:340000
KS ci ratio: 1.702832e-02	ci left: 1.336977e-01	ci right 1.359968e-01	k: 45847	n:340000
ARID1B   340000 perm   146 sec   (2336 perm/sec)   p_kst 1.348441e-01   p_cons 2.302941e-03   p_joint 5.205882e-03

Joint ci ratio: 9.215726e-02	ci left: 4.905770e-03	ci right 5.382480e-03	k: 1799	n:350000
Cons ci ratio: 1.373204e-01	ci left: 2.163317e-03	ci right 2.485011e-03	k: 812	n:350000
KS ci ratio: 1.678874e-02	ci left: 1.336389e-01	ci right 1.359043e-01	k: 47169	n:350000
ARID1B   350000 perm   151 sec   (2313 perm/sec)   p_kst 1.347686e-01   p_cons 2.320000e-03   p_joint 5.140000e-03

Joint ci ratio: 9.085420e-02	ci left: 4.910638e-03	ci right 5.380715e-03	k: 1851	n:360000
Cons ci ratio: 1.353372e-01	ci left: 2.167618e-03	ci right 2.484922e-03	k: 836	n:360000
KS ci ratio: 1.654854e-02	ci left: 1.337303e-01	ci right 1.359645e-01	k: 48544	n:360000
ARID1B   360000 perm   157 sec   (2294 perm/sec)   p_kst 1.348444e-01   p_cons 2.322222e-03   p_joint 5.141667e-03

Joint ci ratio: 9.527838e-02	ci left: 4.337004e-03	ci right 4.773514e-03	k: 1684	n:370000
Cons ci ratio: 1.340633e-01	ci left: 2.150819e-03	ci right 2.462463e-03	k: 852	n:370000
KS ci ratio: 1.632310e-02	ci left: 1.337496e-01	ci right 1.359534e-01	k: 49894	n:370000
ARID1B   370000 perm   163 sec   (2274 perm/sec)   p_kst 1.348486e-01   p_cons 2.302703e-03   p_joint 4.551351e-03

Joint ci ratio: 9.403112e-02	ci left: 4.338490e-03	ci right 4.769119e-03	k: 1729	n:380000
Cons ci ratio: 1.320651e-01	ci left: 2.160362e-03	ci right 2.468358e-03	k: 878	n:380000
KS ci ratio: 1.611080e-02	ci left: 1.337078e-01	ci right 1.358820e-01	k: 51221	n:380000
ARID1B   380000 perm   168 sec   (2256 perm/sec)   p_kst 1.347921e-01   p_cons 2.310526e-03   p_joint 4.550000e-03

Joint ci ratio: 9.710033e-02	ci left: 3.959406e-03	ci right 4.365964e-03	k: 1622	n:390000
Cons ci ratio: 1.305884e-01	ci left: 2.154565e-03	ci right 2.458033e-03	k: 898	n:390000
KS ci ratio: 1.589556e-02	ci left: 1.338293e-01	ci right 1.359761e-01	k: 52611	n:390000
ARID1B   390000 perm   174 sec   (2237 perm/sec)   p_kst 1.349000e-01   p_cons 2.302564e-03   p_joint 4.158974e-03

Joint ci ratio: 9.845450e-02	ci left: 3.753091e-03	ci right 4.144149e-03	k: 1578	n:400000
Cons ci ratio: 1.288093e-01	ci left: 2.161174e-03	ci right 2.461109e-03	k: 923	n:400000
KS ci ratio: 1.569292e-02	ci left: 1.338826e-01	ci right 1.360027e-01	k: 53976	n:400000
ARID1B   400000 perm   180 sec   (2217 perm/sec)   p_kst 1.349400e-01   p_cons 2.307500e-03   p_joint 3.945000e-03

Joint ci ratio: 9.874216e-02	ci left: 3.640132e-03	ci right 4.020592e-03	k: 1569	n:410000
Cons ci ratio: 1.272355e-01	ci left: 2.162763e-03	ci right 2.458975e-03	k: 946	n:410000
KS ci ratio: 1.550383e-02	ci left: 1.338435e-01	ci right 1.359372e-01	k: 55304	n:410000
ARID1B   410000 perm   186 sec   (2199 perm/sec)   p_kst 1.348878e-01   p_cons 2.307317e-03   p_joint 3.826829e-03

Joint ci ratio: 9.756849e-02	ci left: 3.641717e-03	ci right 4.017560e-03	k: 1607	n:420000
Cons ci ratio: 1.256531e-01	ci left: 2.166605e-03	ci right 2.459377e-03	k: 970	n:420000
KS ci ratio: 1.532486e-02	ci left: 1.337543e-01	ci right 1.358222e-01	k: 56610	n:420000
ARID1B   420000 perm   193 sec   (2180 perm/sec)   p_kst 1.347857e-01   p_cons 2.309524e-03   p_joint 3.826190e-03

Joint ci ratio: 9.637694e-02	ci left: 3.647794e-03	ci right 4.019406e-03	k: 1647	n:430000
Cons ci ratio: 1.242536e-01	ci left: 2.165782e-03	ci right 2.454943e-03	k: 992	n:430000
KS ci ratio: 1.514651e-02	ci left: 1.337527e-01	ci right 1.357964e-01	k: 57952	n:430000
ARID1B   430000 perm   199 sec   (2162 perm/sec)   p_kst 1.347721e-01   p_cons 2.306977e-03   p_joint 3.830233e-03

Joint ci ratio: 9.519970e-02	ci left: 3.655840e-03	ci right 4.023469e-03	k: 1688	n:440000
Cons ci ratio: 1.224172e-01	ci left: 2.182639e-03	ci right 2.469432e-03	k: 1022	n:440000
KS ci ratio: 1.497307e-02	ci left: 1.337695e-01	ci right 1.357898e-01	k: 59302	n:440000
ARID1B   440000 perm   205 sec   (2144 perm/sec)   p_kst 1.347773e-01   p_cons 2.322727e-03   p_joint 3.836364e-03

Joint ci ratio: 9.540243e-02	ci left: 3.559405e-03	ci right 3.918142e-03	k: 1681	n:450000
Cons ci ratio: 1.212965e-01	ci left: 2.175071e-03	ci right 2.458065e-03	k: 1041	n:450000
KS ci ratio: 1.480461e-02	ci left: 1.337990e-01	ci right 1.357968e-01	k: 60658	n:450000
ARID1B   450000 perm   211 sec   (2128 perm/sec)   p_kst 1.347956e-01   p_cons 2.313333e-03   p_joint 3.735556e-03

Joint ci ratio: 9.412315e-02	ci left: 3.579659e-03	ci right 3.935332e-03	k: 1727	n:460000
Cons ci ratio: 1.194190e-01	ci left: 2.197367e-03	ci right 2.478525e-03	k: 1074	n:460000
KS ci ratio: 1.465072e-02	ci left: 1.336843e-01	ci right 1.356594e-01	k: 61948	n:460000
ARID1B   460000 perm   218 sec   (2112 perm/sec)   p_kst 1.346696e-01   p_cons 2.334783e-03   p_joint 3.754348e-03

Joint ci ratio: 8.460456e-02	ci left: 4.354384e-03	ci right 4.741124e-03	k: 2136	n:470000
Cons ci ratio: 1.185410e-01	ci left: 2.183643e-03	ci right 2.460847e-03	k: 1090	n:470000
KS ci ratio: 1.449743e-02	ci left: 1.336403e-01	ci right 1.355940e-01	k: 63269	n:470000
ARID1B   470000 perm   224 sec   (2095 perm/sec)   p_kst 1.346149e-01   p_cons 2.319149e-03   p_joint 4.544681e-03

Joint ci ratio: 8.492854e-02	ci left: 4.231030e-03	ci right 4.608324e-03	k: 2120	n:480000
Cons ci ratio: 1.170479e-01	ci left: 2.194766e-03	ci right 2.469630e-03	k: 1118	n:480000
KS ci ratio: 1.434577e-02	ci left: 1.336481e-01	ci right 1.355813e-01	k: 64614	n:480000
ARID1B   480000 perm   231 sec   (2079 perm/sec)   p_kst 1.346125e-01   p_cons 2.329167e-03   p_joint 4.416667e-03

Joint ci ratio: 8.404162e-02	ci left: 4.234579e-03	ci right 4.608053e-03	k: 2165	n:490000
Cons ci ratio: 1.155090e-01	ci left: 2.209420e-03	ci right 2.482232e-03	k: 1148	n:490000
KS ci ratio: 1.420325e-02	ci left: 1.335825e-01	ci right 1.354953e-01	k: 65923	n:490000
ARID1B   490000 perm   237 sec   (2063 perm/sec)   p_kst 1.345367e-01   p_cons 2.342857e-03   p_joint 4.418367e-03

Joint ci ratio: 7.709572e-02	ci left: 4.945623e-03	ci right 5.344144e-03	k: 2571	n:500000
Cons ci ratio: 1.144190e-01	ci left: 2.207966e-03	ci right 2.477852e-03	k: 1170	n:500000
KS ci ratio: 1.405620e-02	ci left: 1.336631e-01	ci right 1.355571e-01	k: 67304	n:500000
ARID1B   500000 perm   244 sec   (2048 perm/sec)   p_kst 1.346080e-01   p_cons 2.340000e-03   p_joint 5.142000e-03

Joint ci ratio: 7.644517e-02	ci left: 4.933267e-03	ci right 5.327289e-03	k: 2615	n:510000
Cons ci ratio: 1.133592e-01	ci left: 2.206581e-03	ci right 2.473633e-03	k: 1192	n:510000
KS ci ratio: 1.391410e-02	ci left: 1.337328e-01	ci right 1.356086e-01	k: 68681	n:510000
ARID1B   510000 perm   251 sec   (2033 perm/sec)   p_kst 1.346686e-01   p_cons 2.337255e-03   p_joint 5.127451e-03

Joint ci ratio: 7.681876e-02	ci left: 4.791228e-03	ci right 5.175858e-03	k: 2590	n:520000
Cons ci ratio: 1.123284e-01	ci left: 2.205260e-03	ci right 2.469564e-03	k: 1214	n:520000
KS ci ratio: 1.378861e-02	ci left: 1.335910e-01	ci right 1.354477e-01	k: 69949	n:520000
ARID1B   520000 perm   258 sec   (2018 perm/sec)   p_kst 1.345173e-01   p_cons 2.334615e-03   p_joint 4.980769e-03

Joint ci ratio: 7.053162e-02	ci left: 5.589909e-03	ci right 6.000427e-03	k: 3070	n:530000
Cons ci ratio: 1.108323e-01	ci left: 2.224179e-03	ci right 2.486969e-03	k: 1247	n:530000
KS ci ratio: 1.365849e-02	ci left: 1.335900e-01	ci right 1.354291e-01	k: 71289	n:530000
ARID1B   530000 perm   265 sec   (2003 perm/sec)   p_kst 1.345075e-01   p_cons 2.352830e-03   p_joint 5.792453e-03

Joint ci ratio: 7.001002e-02	ci left: 5.570079e-03	ci right 5.975992e-03	k: 3116	n:540000
Cons ci ratio: 1.098250e-01	ci left: 2.224408e-03	ci right 2.484681e-03	k: 1270	n:540000
KS ci ratio: 1.353392e-02	ci left: 1.335559e-01	ci right 1.353776e-01	k: 72611	n:540000
ARID1B   540000 perm   272 sec   (1988 perm/sec)   p_kst 1.344648e-01   p_cons 2.351852e-03   p_joint 5.770370e-03

Joint ci ratio: 6.945566e-02	ci left: 5.558127e-03	ci right 5.959833e-03	k: 3166	n:550000
Cons ci ratio: 1.087604e-01	ci left: 2.228176e-03	ci right 2.486202e-03	k: 1295	n:550000
KS ci ratio: 1.341122e-02	ci left: 1.335486e-01	ci right 1.353535e-01	k: 73947	n:550000
ARID1B   550000 perm   279 sec   (1973 perm/sec)   p_kst 1.344491e-01   p_cons 2.354545e-03   p_joint 5.756364e-03

Joint ci ratio: 7.124585e-02	ci left: 5.185168e-03	ci right 5.569977e-03	k: 3010	n:560000
Cons ci ratio: 1.079312e-01	ci left: 2.223133e-03	ci right 2.478487e-03	k: 1315	n:560000
KS ci ratio: 1.329630e-02	ci left: 1.334632e-01	ci right 1.352513e-01	k: 75239	n:560000
ARID1B   560000 perm   286 sec   (1958 perm/sec)   p_kst 1.343554e-01   p_cons 2.348214e-03   p_joint 5.375000e-03

Joint ci ratio: 7.177838e-02	ci left: 5.018372e-03	ci right 5.393702e-03	k: 2966	n:570000
Cons ci ratio: 1.067607e-01	ci left: 2.233643e-03	ci right 2.487247e-03	k: 1344	n:570000
KS ci ratio: 1.317831e-02	ci left: 1.334858e-01	ci right 1.352583e-01	k: 76591	n:570000
ARID1B   570000 perm   293 sec   (1944 perm/sec)   p_kst 1.343702e-01   p_cons 2.357895e-03   p_joint 5.203509e-03

Joint ci ratio: 6.347463e-02	ci left: 6.325339e-03	ci right 6.741682e-03	k: 3788	n:580000
Cons ci ratio: 1.057047e-01	ci left: 2.240447e-03	ci right 2.492151e-03	k: 1371	n:580000
KS ci ratio: 1.305809e-02	ci left: 1.336023e-01	ci right 1.353600e-01	k: 77998	n:580000
ARID1B   580000 perm   301 sec   (1930 perm/sec)   p_kst 1.344793e-01   p_cons 2.363793e-03   p_joint 6.531034e-03

Joint ci ratio: 6.301945e-02	ci left: 6.309874e-03	ci right 6.722113e-03	k: 3843	n:590000
Cons ci ratio: 1.046794e-01	ci left: 2.247032e-03	ci right 2.496877e-03	k: 1398	n:590000
KS ci ratio: 1.294420e-02	ci left: 1.336591e-01	ci right 1.354021e-01	k: 79372	n:590000
ARID1B   590000 perm   308 sec   (1914 perm/sec)   p_kst 1.345288e-01   p_cons 2.369492e-03   p_joint 6.513559e-03

Joint ci ratio: 6.250941e-02	ci left: 6.308061e-03	ci right 6.716725e-03	k: 3906	n:600000
Cons ci ratio: 1.039762e-01	ci left: 2.240422e-03	ci right 2.487756e-03	k: 1417	n:600000
KS ci ratio: 1.283453e-02	ci left: 1.336908e-01	ci right 1.354194e-01	k: 80732	n:600000
ARID1B   600000 perm   316 sec   (1900 perm/sec)   p_kst 1.345533e-01   p_cons 2.361667e-03   p_joint 6.510000e-03

Joint ci ratio: 6.218522e-02	ci left: 6.270812e-03	ci right 6.674880e-03	k: 3947	n:610000
Cons ci ratio: 1.030714e-01	ci left: 2.243616e-03	ci right 2.489017e-03	k: 1442	n:610000
KS ci ratio: 1.273307e-02	ci left: 1.336218e-01	ci right 1.353357e-01	k: 82031	n:610000
ARID1B   610000 perm   323 sec   (1887 perm/sec)   p_kst 1.344770e-01   p_cons 2.363934e-03   p_joint 6.470492e-03

Joint ci ratio: 6.233165e-02	ci left: 6.141077e-03	ci right 6.537751e-03	k: 3929	n:620000
Cons ci ratio: 1.021550e-01	ci left: 2.248288e-03	ci right 2.491882e-03	k: 1468	n:620000
KS ci ratio: 1.263047e-02	ci left: 1.336195e-01	ci right 1.353194e-01	k: 83370	n:620000
ARID1B   620000 perm   331 sec   (1873 perm/sec)   p_kst 1.344677e-01   p_cons 2.367742e-03   p_joint 6.337097e-03

Joint ci ratio: 6.277023e-02	ci left: 5.959209e-03	ci right 6.346941e-03	k: 3875	n:630000
Cons ci ratio: 1.016381e-01	ci left: 2.235803e-03	ci right 2.476746e-03	k: 1483	n:630000
KS ci ratio: 1.252818e-02	ci left: 1.336568e-01	ci right 1.353434e-01	k: 84734	n:630000
ARID1B   630000 perm   339 sec   (1860 perm/sec)   p_kst 1.344984e-01   p_cons 2.353968e-03   p_joint 6.150794e-03

Joint ci ratio: 6.236981e-02	ci left: 5.942997e-03	ci right 6.327119e-03	k: 3925	n:640000
Cons ci ratio: 1.011290e-01	ci left: 2.223711e-03	ci right 2.462079e-03	k: 1498	n:640000
KS ci ratio: 1.242925e-02	ci left: 1.336759e-01	ci right 1.353493e-01	k: 86087	n:640000
ARID1B   640000 perm   347 sec   (1847 perm/sec)   p_kst 1.345109e-01   p_cons 2.340625e-03   p_joint 6.132813e-03

Joint ci ratio: 6.199264e-02	ci left: 5.924263e-03	ci right 6.304775e-03	k: 3973	n:650000
Cons ci ratio: 1.003620e-01	ci left: 2.223994e-03	ci right 2.460477e-03	k: 1521	n:650000
KS ci ratio: 1.233361e-02	ci left: 1.336760e-01	ci right 1.353365e-01	k: 87428	n:650000
ARID1B   650000 perm   354 sec   (1834 perm/sec)   p_kst 1.345046e-01   p_cons 2.340000e-03   p_joint 6.112308e-03

Joint ci ratio: 5.754507e-02	ci left: 6.780852e-03	ci right 7.184099e-03	k: 4607	n:660000
Cons ci ratio: 9.948321e-02	ci left: 2.230184e-03	ci right 2.465128e-03	k: 1548	n:660000
KS ci ratio: 1.224452e-02	ci left: 1.335931e-01	ci right 1.352404e-01	k: 88714	n:660000
ARID1B   660000 perm   362 sec   (1822 perm/sec)   p_kst 1.344152e-01   p_cons 2.345455e-03   p_joint 6.980303e-03

Outputting figure to mutsig2_images.part000000000010/ARID1B.13_6830_660000_0.13442_0.0023455_0.0069803.png
                gene_name: ARID1B
               theta_stop: 0.099 
                    nperm: 660000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0023 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0025 
                  p_joint: 0.0070 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0072 

Current progress: 11 percent done.
AQR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
Cons ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
KS ci ratio: 3.832596e-02	ci left: 5.013506e-01	ci right 5.210429e-01	k: 5112	n:10000
AQR   10000 perm   2 sec   (4304 perm/sec)   p_kst 5.112000e-01   p_cons 7.542000e-01   p_joint 7.350000e-01

Outputting figure to mutsig2_images.part000000000010/AQR.12_4598_10000_0.5112_0.7542_0.735.png
                gene_name: AQR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 12 percent done.
ARHGAP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
ARHGAP31   10000 perm   2 sec   (4199 perm/sec)   p_kst 7.595000e-01   p_cons 6.510000e-02   p_joint 2.116000e-01

Joint ci ratio: 4.926436e-02	ci left: 2.344907e-01	ci right 2.463848e-01	k: 4808	n:20000
Cons ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
KS ci ratio: 1.510217e-02	ci left: 7.652133e-01	ci right 7.769078e-01	k: 15422	n:20000
ARHGAP31   20000 perm   5 sec   (3849 perm/sec)   p_kst 7.711000e-01   p_cons 6.060000e-02   p_joint 2.404000e-01

Joint ci ratio: 3.924513e-02	ci left: 2.446442e-01	ci right 2.544710e-01	k: 7486	n:30000
Cons ci ratio: 9.098567e-02	ci left: 5.560955e-02	ci right 6.094306e-02	k: 1747	n:30000
KS ci ratio: 1.239605e-02	ci left: 7.644231e-01	ci right 7.739914e-01	k: 23077	n:30000
ARHGAP31   30000 perm   8 sec   (3719 perm/sec)   p_kst 7.692333e-01   p_cons 5.823333e-02   p_joint 2.495333e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP31.11_4383_30000_0.76923_0.058233_0.24953.png
                gene_name: ARHGAP31
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 14 percent done.
ARHGEF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
Cons ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
KS ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
ARHGEF11   10000 perm   2 sec   (4002 perm/sec)   p_kst 2.739000e-01   p_cons 2.293000e-01   p_joint 3.112000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF11.11_4853_10000_0.2739_0.2293_0.3112.png
                gene_name: ARHGEF11
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 15 percent done.
ARHGEF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
ARHGEF12   10000 perm   2 sec   (4293 perm/sec)   p_kst 6.460000e-01   p_cons 4.293000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF12.11_4799_10000_0.646_0.4293_0.6558.png
                gene_name: ARHGEF12
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 17 percent done.
ARAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
ARAP3   10000 perm   2 sec   (4329 perm/sec)   p_kst 4.579000e-01   p_cons 6.896000e-01   p_joint 8.822000e-01

Outputting figure to mutsig2_images.part000000000010/ARAP3.9_4763_10000_0.4579_0.6896_0.8822.png
                gene_name: ARAP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 18 percent done.
ARHGAP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
Cons ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
KS ci ratio: 2.316274e-02	ci left: 7.324964e-01	ci right 7.497629e-01	k: 7412	n:10000
ARHGAP25   10000 perm   2 sec   (5010 perm/sec)   p_kst 7.412000e-01   p_cons 3.323000e-01   p_joint 7.946000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP25.9_2025_10000_0.7412_0.3323_0.7946.png
                gene_name: ARHGAP25
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
ARHGEF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
Cons ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
KS ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
ARHGEF3   10000 perm   2 sec   (5377 perm/sec)   p_kst 1.755000e-01   p_cons 2.600000e-03   p_joint 1.000000e-02

Joint ci ratio: 2.016150e-01	ci left: 1.667773e-02	ci right 2.046408e-02	k: 370	n:20000
Cons ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
KS ci ratio: 6.130053e-02	ci left: 1.645210e-01	ci right 1.749752e-01	k: 3394	n:20000
ARHGEF3   20000 perm   4 sec   (4811 perm/sec)   p_kst 1.697000e-01   p_cons 2.600000e-03   p_joint 1.850000e-02

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 4.102971e-01	ci left: 2.413024e-03	ci right 3.686241e-03	k: 90	n:30000
KS ci ratio: 5.028699e-02	ci left: 1.641810e-01	ci right 1.726834e-01	k: 5052	n:30000
ARHGEF3   30000 perm   7 sec   (4597 perm/sec)   p_kst 1.684000e-01   p_cons 3.000000e-03   p_joint 9.700000e-03

Joint ci ratio: 2.235984e-01	ci left: 6.772323e-03	ci right 8.500309e-03	k: 304	n:40000
Cons ci ratio: 3.588064e-01	ci left: 2.442383e-03	ci right 3.531758e-03	k: 118	n:40000
KS ci ratio: 4.380164e-02	ci left: 1.631584e-01	ci right 1.704900e-01	k: 6672	n:40000
ARHGEF3   40000 perm   9 sec   (4476 perm/sec)   p_kst 1.668000e-01   p_cons 2.950000e-03   p_joint 7.600000e-03

Joint ci ratio: 1.521590e-01	ci left: 1.210246e-02	ci right 1.411465e-02	k: 654	n:50000
Cons ci ratio: 3.185198e-01	ci left: 2.539683e-03	ci right 3.519427e-03	k: 150	n:50000
KS ci ratio: 3.988916e-02	ci left: 1.586413e-01	ci right 1.651180e-01	k: 8093	n:50000
ARHGEF3   50000 perm   11 sec   (4375 perm/sec)   p_kst 1.618600e-01   p_cons 3.000000e-03   p_joint 1.308000e-02

Joint ci ratio: 1.495809e-01	ci left: 1.046961e-02	ci right 1.217815e-02	k: 678	n:60000
Cons ci ratio: 2.950450e-01	ci left: 2.501031e-03	ci right 3.381473e-03	k: 175	n:60000
KS ci ratio: 3.624641e-02	ci left: 1.601683e-01	ci right 1.660976e-01	k: 9787	n:60000
ARHGEF3   60000 perm   14 sec   (4286 perm/sec)   p_kst 1.631167e-01   p_cons 2.916667e-03   p_joint 1.130000e-02

Joint ci ratio: 1.542405e-01	ci left: 8.437289e-03	ci right 9.860989e-03	k: 639	n:70000
Cons ci ratio: 3.020693e-01	ci left: 2.037936e-03	ci right 2.775708e-03	k: 167	n:70000
KS ci ratio: 3.319423e-02	ci left: 1.633639e-01	ci right 1.688924e-01	k: 11628	n:70000
ARHGEF3   70000 perm   17 sec   (4205 perm/sec)   p_kst 1.661143e-01   p_cons 2.385714e-03   p_joint 9.128571e-03

Joint ci ratio: 1.477246e-01	ci left: 8.080133e-03	ci right 9.380870e-03	k: 697	n:80000
Cons ci ratio: 2.734320e-01	ci left: 2.212422e-03	ci right 2.924417e-03	k: 204	n:80000
KS ci ratio: 3.100462e-02	ci left: 1.639493e-01	ci right 1.691249e-01	k: 13322	n:80000
ARHGEF3   80000 perm   19 sec   (4134 perm/sec)   p_kst 1.665250e-01   p_cons 2.550000e-03   p_joint 8.712500e-03

Joint ci ratio: 1.188421e-01	ci left: 1.123413e-02	ci right 1.266426e-02	k: 1074	n:90000
Cons ci ratio: 2.537583e-01	ci left: 2.309082e-03	ci right 2.990272e-03	k: 237	n:90000
KS ci ratio: 2.922721e-02	ci left: 1.641377e-01	ci right 1.690172e-01	k: 14991	n:90000
ARHGEF3   90000 perm   22 sec   (4059 perm/sec)   p_kst 1.665667e-01   p_cons 2.633333e-03   p_joint 1.193333e-02

Joint ci ratio: 1.174321e-01	ci left: 1.037246e-02	ci right 1.167613e-02	k: 1101	n:100000
Cons ci ratio: 2.427906e-01	ci left: 2.284487e-03	ci right 2.924906e-03	k: 259	n:100000
KS ci ratio: 2.779224e-02	ci left: 1.636190e-01	ci right 1.682404e-01	k: 16592	n:100000
ARHGEF3   100000 perm   25 sec   (3995 perm/sec)   p_kst 1.659200e-01   p_cons 2.590000e-03   p_joint 1.101000e-02

Joint ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
Cons ci ratio: 2.318987e-01	ci left: 2.290571e-03	ci right 2.899763e-03	k: 284	n:110000
KS ci ratio: 2.651829e-02	ci left: 1.635252e-01	ci right 1.679289e-01	k: 18229	n:110000
ARHGEF3   110000 perm   28 sec   (3932 perm/sec)   p_kst 1.657182e-01   p_cons 2.581818e-03   p_joint 8.863636e-03

Joint ci ratio: 1.420241e-01	ci left: 5.860130e-03	ci right 6.763977e-03	k: 756	n:120000
Cons ci ratio: 2.241722e-01	ci left: 2.256834e-03	ci right 2.834293e-03	k: 304	n:120000
KS ci ratio: 2.535746e-02	ci left: 1.639650e-01	ci right 1.681844e-01	k: 19928	n:120000
ARHGEF3   120000 perm   31 sec   (3870 perm/sec)   p_kst 1.660667e-01   p_cons 2.533333e-03   p_joint 6.300000e-03

Joint ci ratio: 1.307260e-01	ci left: 6.419983e-03	ci right 7.325301e-03	k: 892	n:130000
Cons ci ratio: 2.279712e-01	ci left: 2.010634e-03	ci right 2.535040e-03	k: 294	n:130000
KS ci ratio: 2.434627e-02	ci left: 1.642336e-01	ci right 1.682890e-01	k: 21613	n:130000
ARHGEF3   130000 perm   34 sec   (3812 perm/sec)   p_kst 1.662538e-01   p_cons 2.261538e-03   p_joint 6.861538e-03

Joint ci ratio: 1.354966e-01	ci left: 5.540031e-03	ci right 6.352065e-03	k: 831	n:140000
Cons ci ratio: 2.195721e-01	ci left: 2.022098e-03	ci right 2.527442e-03	k: 317	n:140000
KS ci ratio: 2.348099e-02	ci left: 1.640685e-01	ci right 1.679739e-01	k: 23242	n:140000
ARHGEF3   140000 perm   37 sec   (3753 perm/sec)   p_kst 1.660143e-01   p_cons 2.264286e-03   p_joint 5.935714e-03

Joint ci ratio: 1.206071e-01	ci left: 6.571368e-03	ci right 7.421190e-03	k: 1048	n:150000
Cons ci ratio: 2.098895e-01	ci left: 2.076547e-03	ci right 2.569673e-03	k: 347	n:150000
KS ci ratio: 2.267291e-02	ci left: 1.642795e-01	ci right 1.680535e-01	k: 24924	n:150000
ARHGEF3   150000 perm   41 sec   (3697 perm/sec)   p_kst 1.661600e-01   p_cons 2.313333e-03   p_joint 6.986667e-03

Joint ci ratio: 9.931103e-02	ci left: 9.164572e-03	ci right 1.012832e-02	k: 1542	n:160000
Cons ci ratio: 2.021899e-01	ci left: 2.106812e-03	ci right 2.586506e-03	k: 374	n:160000
KS ci ratio: 2.194833e-02	ci left: 1.643976e-01	ci right 1.680520e-01	k: 26595	n:160000
ARHGEF3   160000 perm   44 sec   (3643 perm/sec)   p_kst 1.662187e-01   p_cons 2.337500e-03   p_joint 9.637500e-03

Joint ci ratio: 9.803348e-02	ci left: 8.860636e-03	ci right 9.779744e-03	k: 1583	n:170000
Cons ci ratio: 1.972572e-01	ci left: 2.089056e-03	ci right 2.551708e-03	k: 393	n:170000
KS ci ratio: 2.132254e-02	ci left: 1.640700e-01	ci right 1.676120e-01	k: 28192	n:170000
ARHGEF3   170000 perm   47 sec   (3593 perm/sec)   p_kst 1.658353e-01   p_cons 2.311765e-03   p_joint 9.311765e-03

Joint ci ratio: 9.562244e-02	ci left: 8.807469e-03	ci right 9.697333e-03	k: 1664	n:180000
Cons ci ratio: 1.910526e-01	ci left: 2.110423e-03	ci right 2.561400e-03	k: 419	n:180000
KS ci ratio: 2.073320e-02	ci left: 1.639684e-01	ci right 1.674091e-01	k: 29823	n:180000
ARHGEF3   180000 perm   51 sec   (3543 perm/sec)   p_kst 1.656833e-01   p_cons 2.327778e-03   p_joint 9.244444e-03

Joint ci ratio: 9.643792e-02	ci left: 8.205103e-03	ci right 9.041572e-03	k: 1637	n:190000
Cons ci ratio: 1.868746e-01	ci left: 2.094617e-03	ci right 2.531317e-03	k: 438	n:190000
KS ci ratio: 2.073335e-02	ci left: 1.567032e-01	ci right 1.599914e-01	k: 30085	n:190000
ARHGEF3   190000 perm   54 sec   (3495 perm/sec)   p_kst 1.583421e-01   p_cons 2.305263e-03   p_joint 8.615789e-03

Joint ci ratio: 9.466881e-02	ci left: 8.097418e-03	ci right 8.906925e-03	k: 1699	n:200000
Cons ci ratio: 1.809895e-01	ci left: 2.128214e-03	ci right 2.556414e-03	k: 467	n:200000
KS ci ratio: 2.020022e-02	ci left: 1.568521e-01	ci right 1.600578e-01	k: 31690	n:200000
ARHGEF3   200000 perm   58 sec   (3447 perm/sec)   p_kst 1.584500e-01   p_cons 2.335000e-03   p_joint 8.495000e-03

Joint ci ratio: 9.862444e-02	ci left: 7.098260e-03	ci right 7.839243e-03	k: 1567	n:210000
Cons ci ratio: 1.759827e-01	ci left: 2.149701e-03	ci right 2.568987e-03	k: 494	n:210000
KS ci ratio: 2.002924e-02	ci left: 1.527147e-01	ci right 1.558091e-01	k: 32394	n:210000
ARHGEF3   210000 perm   62 sec   (3403 perm/sec)   p_kst 1.542571e-01   p_cons 2.352381e-03   p_joint 7.461905e-03

Joint ci ratio: 9.724560e-02	ci left: 6.975125e-03	ci right 7.692493e-03	k: 1612	n:220000
Cons ci ratio: 1.712054e-01	ci left: 2.173733e-03	ci right 2.585008e-03	k: 522	n:220000
KS ci ratio: 1.957952e-02	ci left: 1.526072e-01	ci right 1.556292e-01	k: 33905	n:220000
ARHGEF3   220000 perm   66 sec   (3357 perm/sec)   p_kst 1.541136e-01   p_cons 2.372727e-03   p_joint 7.327273e-03

Joint ci ratio: 9.523099e-02	ci left: 6.964636e-03	ci right 7.665258e-03	k: 1681	n:230000
Cons ci ratio: 1.680242e-01	ci left: 2.162487e-03	ci right 2.563263e-03	k: 542	n:230000
KS ci ratio: 1.914218e-02	ci left: 1.527349e-01	ci right 1.556912e-01	k: 35468	n:230000
ARHGEF3   230000 perm   69 sec   (3314 perm/sec)   p_kst 1.542087e-01   p_cons 2.356522e-03   p_joint 7.308696e-03

Joint ci ratio: 9.434598e-02	ci left: 6.804589e-03	ci right 7.482396e-03	k: 1713	n:240000
Cons ci ratio: 1.642845e-01	ci left: 2.172219e-03	ci right 2.564953e-03	k: 567	n:240000
KS ci ratio: 1.874817e-02	ci left: 1.526410e-01	ci right 1.555340e-01	k: 36980	n:240000
ARHGEF3   240000 perm   73 sec   (3269 perm/sec)   p_kst 1.540833e-01   p_cons 2.362500e-03   p_joint 7.137500e-03

Joint ci ratio: 9.408360e-02	ci left: 6.571426e-03	ci right 7.224085e-03	k: 1723	n:250000
Cons ci ratio: 1.597075e-01	ci left: 2.211984e-03	ci right 2.599696e-03	k: 600	n:250000
KS ci ratio: 1.837894e-02	ci left: 1.525353e-01	ci right 1.553687e-01	k: 38487	n:250000
ARHGEF3   250000 perm   77 sec   (3229 perm/sec)   p_kst 1.539480e-01   p_cons 2.400000e-03   p_joint 6.892000e-03

Joint ci ratio: 9.306914e-02	ci left: 6.461395e-03	ci right 7.095829e-03	k: 1761	n:260000
Cons ci ratio: 1.562357e-01	ci left: 2.226650e-03	ci right 2.607654e-03	k: 627	n:260000
KS ci ratio: 1.802962e-02	ci left: 1.524536e-01	ci right 1.552311e-01	k: 39998	n:260000
ARHGEF3   260000 perm   82 sec   (3189 perm/sec)   p_kst 1.538385e-01   p_cons 2.411538e-03   p_joint 6.773077e-03

Joint ci ratio: 9.185572e-02	ci left: 6.392122e-03	ci right 7.011131e-03	k: 1808	n:270000
Cons ci ratio: 1.535696e-01	ci left: 2.222504e-03	ci right 2.595712e-03	k: 649	n:270000
KS ci ratio: 1.768867e-02	ci left: 1.525371e-01	ci right 1.552630e-01	k: 41552	n:270000
ARHGEF3   270000 perm   86 sec   (3151 perm/sec)   p_kst 1.538963e-01   p_cons 2.403704e-03   p_joint 6.696296e-03

Joint ci ratio: 9.032179e-02	ci left: 6.380214e-03	ci right 6.987207e-03	k: 1870	n:280000
Cons ci ratio: 1.504753e-01	ci left: 2.235891e-03	ci right 2.603101e-03	k: 676	n:280000
KS ci ratio: 1.736136e-02	ci left: 1.526898e-01	ci right 1.553674e-01	k: 43127	n:280000
ARHGEF3   280000 perm   90 sec   (3115 perm/sec)   p_kst 1.540250e-01   p_cons 2.414286e-03   p_joint 6.678571e-03

Joint ci ratio: 8.257882e-02	ci left: 7.391820e-03	ci right 8.031870e-03	k: 2235	n:290000
Cons ci ratio: 1.477714e-01	ci left: 2.241782e-03	ci right 2.602759e-03	k: 701	n:290000
KS ci ratio: 1.706895e-02	ci left: 1.525678e-01	ci right 1.551978e-01	k: 44625	n:290000
ARHGEF3   290000 perm   94 sec   (3082 perm/sec)   p_kst 1.538793e-01   p_cons 2.417241e-03   p_joint 7.706897e-03

Joint ci ratio: 8.242256e-02	ci left: 7.174774e-03	ci right 7.794797e-03	k: 2244	n:300000
Cons ci ratio: 1.455095e-01	ci left: 2.237698e-03	ci right 2.592023e-03	k: 723	n:300000
KS ci ratio: 1.677988e-02	ci left: 1.526237e-01	ci right 1.552097e-01	k: 46174	n:300000
ARHGEF3   300000 perm   98 sec   (3047 perm/sec)   p_kst 1.539133e-01   p_cons 2.410000e-03   p_joint 7.480000e-03

Joint ci ratio: 8.116750e-02	ci left: 7.164516e-03	ci right 7.773778e-03	k: 2314	n:310000
Cons ci ratio: 1.433484e-01	ci left: 2.233917e-03	ci right 2.581941e-03	k: 745	n:310000
KS ci ratio: 1.651114e-02	ci left: 1.525799e-01	ci right 1.551233e-01	k: 47693	n:310000
ARHGEF3   310000 perm   103 sec   (3014 perm/sec)   p_kst 1.538484e-01   p_cons 2.403226e-03   p_joint 7.464516e-03

Joint ci ratio: 7.647554e-02	ci left: 7.832189e-03	ci right 8.458018e-03	k: 2605	n:320000
Cons ci ratio: 1.408220e-01	ci left: 2.245484e-03	ci right 2.588626e-03	k: 772	n:320000
KS ci ratio: 1.624925e-02	ci left: 1.526295e-01	ci right 1.551330e-01	k: 49241	n:320000
ARHGEF3   320000 perm   107 sec   (2980 perm/sec)   p_kst 1.538781e-01   p_cons 2.412500e-03   p_joint 8.140625e-03

Joint ci ratio: 6.829459e-02	ci left: 9.547128e-03	ci right 1.022516e-02	k: 3261	n:330000
Cons ci ratio: 1.380790e-01	ci left: 2.268103e-03	ci right 2.607396e-03	k: 803	n:330000
KS ci ratio: 1.600522e-02	ci left: 1.525828e-01	ci right 1.550476e-01	k: 50758	n:330000
ARHGEF3   330000 perm   112 sec   (2946 perm/sec)   p_kst 1.538121e-01   p_cons 2.433333e-03   p_joint 9.881818e-03

Joint ci ratio: 6.789599e-02	ci left: 9.379055e-03	ci right 1.004111e-02	k: 3300	n:340000
Cons ci ratio: 1.347642e-01	ci left: 2.315030e-03	ci right 2.652363e-03	k: 843	n:340000
KS ci ratio: 1.577080e-02	ci left: 1.525566e-01	ci right 1.549846e-01	k: 52281	n:340000
ARHGEF3   340000 perm   117 sec   (2913 perm/sec)   p_kst 1.537676e-01   p_cons 2.479412e-03   p_joint 9.705882e-03

Joint ci ratio: 6.619585e-02	ci left: 9.591498e-03	ci right 1.025094e-02	k: 3471	n:350000
Cons ci ratio: 1.331962e-01	ci left: 2.304113e-03	ci right 2.635639e-03	k: 863	n:350000
KS ci ratio: 1.554655e-02	ci left: 1.525294e-01	ci right 1.549221e-01	k: 53803	n:350000
ARHGEF3   350000 perm   122 sec   (2880 perm/sec)   p_kst 1.537229e-01   p_cons 2.465714e-03   p_joint 9.917143e-03

Joint ci ratio: 6.658370e-02	ci left: 9.218473e-03	ci right 9.856125e-03	k: 3432	n:360000
Cons ci ratio: 1.313100e-01	ci left: 2.307257e-03	ci right 2.634167e-03	k: 888	n:360000
KS ci ratio: 1.532260e-02	ci left: 1.526562e-01	ci right 1.550161e-01	k: 55380	n:360000
ARHGEF3   360000 perm   126 sec   (2848 perm/sec)   p_kst 1.538333e-01   p_cons 2.466667e-03   p_joint 9.533333e-03

Joint ci ratio: 6.663155e-02	ci left: 8.958655e-03	ci right 9.578797e-03	k: 3428	n:370000
Cons ci ratio: 1.287972e-01	ci left: 2.336418e-03	ci right 2.660641e-03	k: 923	n:370000
KS ci ratio: 1.511496e-02	ci left: 1.526578e-01	ci right 1.549855e-01	k: 56913	n:370000
ARHGEF3   370000 perm   131 sec   (2816 perm/sec)   p_kst 1.538189e-01   p_cons 2.494595e-03   p_joint 9.264865e-03

Joint ci ratio: 6.564254e-02	ci left: 8.992064e-03	ci right 9.604928e-03	k: 3532	n:380000
Cons ci ratio: 1.276299e-01	ci left: 2.318234e-03	ci right 2.636797e-03	k: 940	n:380000
KS ci ratio: 1.492188e-02	ci left: 1.525494e-01	ci right 1.548454e-01	k: 58404	n:380000
ARHGEF3   380000 perm   136 sec   (2784 perm/sec)   p_kst 1.536947e-01   p_cons 2.473684e-03   p_joint 9.294737e-03

Joint ci ratio: 6.484040e-02	ci left: 8.983457e-03	ci right 9.587971e-03	k: 3620	n:390000
Cons ci ratio: 1.259675e-01	ci left: 2.320861e-03	ci right 2.635322e-03	k: 965	n:390000
KS ci ratio: 1.472962e-02	ci left: 1.525592e-01	ci right 1.548255e-01	k: 59939	n:390000
ARHGEF3   390000 perm   142 sec   (2756 perm/sec)   p_kst 1.536897e-01   p_cons 2.474359e-03   p_joint 9.282051e-03

Joint ci ratio: 6.447174e-02	ci left: 8.862155e-03	ci right 9.454988e-03	k: 3662	n:400000
Cons ci ratio: 1.248747e-01	ci left: 2.304005e-03	ci right 2.613273e-03	k: 982	n:400000
KS ci ratio: 1.454880e-02	ci left: 1.524939e-01	ci right 1.547312e-01	k: 61444	n:400000
ARHGEF3   400000 perm   147 sec   (2727 perm/sec)   p_kst 1.536100e-01   p_cons 2.455000e-03   p_joint 9.155000e-03

Joint ci ratio: 6.454126e-02	ci left: 8.629174e-03	ci right 9.207067e-03	k: 3655	n:410000
Cons ci ratio: 1.233777e-01	ci left: 2.304529e-03	ci right 2.609888e-03	k: 1006	n:410000
KS ci ratio: 1.436868e-02	ci left: 1.525365e-01	ci right 1.547465e-01	k: 62992	n:410000
ARHGEF3   410000 perm   152 sec   (2699 perm/sec)   p_kst 1.536390e-01   p_cons 2.453659e-03   p_joint 8.914634e-03

Joint ci ratio: 6.428265e-02	ci left: 8.493976e-03	ci right 9.060451e-03	k: 3685	n:420000
Cons ci ratio: 1.216969e-01	ci left: 2.314283e-03	ci right 2.616456e-03	k: 1034	n:420000
KS ci ratio: 1.418911e-02	ci left: 1.526864e-01	ci right 1.548707e-01	k: 64586	n:420000
ARHGEF3   420000 perm   157 sec   (2671 perm/sec)   p_kst 1.537762e-01   p_cons 2.461905e-03   p_joint 8.773810e-03

Joint ci ratio: 6.391430e-02	ci left: 8.394825e-03	ci right 8.951360e-03	k: 3728	n:430000
Cons ci ratio: 1.203671e-01	ci left: 2.312331e-03	ci right 2.610715e-03	k: 1057	n:430000
KS ci ratio: 1.402651e-02	ci left: 1.526371e-01	ci right 1.547955e-01	k: 66097	n:430000
ARHGEF3   430000 perm   163 sec   (2644 perm/sec)   p_kst 1.537140e-01   p_cons 2.458140e-03   p_joint 8.669767e-03

Joint ci ratio: 6.337444e-02	ci left: 8.347167e-03	ci right 8.895697e-03	k: 3792	n:440000
Cons ci ratio: 1.190248e-01	ci left: 2.312690e-03	ci right 2.607559e-03	k: 1081	n:440000
KS ci ratio: 1.385835e-02	ci left: 1.527964e-01	ci right 1.549309e-01	k: 67699	n:440000
ARHGEF3   440000 perm   168 sec   (2618 perm/sec)   p_kst 1.538614e-01   p_cons 2.456818e-03   p_joint 8.618182e-03

Joint ci ratio: 6.209728e-02	ci left: 8.505112e-03	ci right 9.052352e-03	k: 3949	n:450000
Cons ci ratio: 1.176730e-01	ci left: 2.315208e-03	ci right 2.606812e-03	k: 1106	n:450000
KS ci ratio: 1.370300e-02	ci left: 1.528180e-01	ci right 1.549287e-01	k: 69242	n:450000
ARHGEF3   450000 perm   174 sec   (2592 perm/sec)   p_kst 1.538711e-01   p_cons 2.457778e-03   p_joint 8.775556e-03

Joint ci ratio: 5.873876e-02	ci left: 9.307371e-03	ci right 9.872745e-03	k: 4410	n:460000
Cons ci ratio: 1.162121e-01	ci left: 2.323967e-03	ci right 2.612791e-03	k: 1134	n:460000
KS ci ratio: 1.354969e-02	ci left: 1.528973e-01	ci right 1.549853e-01	k: 70812	n:460000
ARHGEF3   460000 perm   179 sec   (2568 perm/sec)   p_kst 1.539391e-01   p_cons 2.465217e-03   p_joint 9.586957e-03

Joint ci ratio: 5.873137e-02	ci left: 9.113508e-03	ci right 9.667033e-03	k: 4412	n:470000
Cons ci ratio: 1.146560e-01	ci left: 2.338575e-03	ci right 2.625060e-03	k: 1165	n:470000
KS ci ratio: 1.340274e-02	ci left: 1.529479e-01	ci right 1.550138e-01	k: 72370	n:470000
ARHGEF3   470000 perm   185 sec   (2543 perm/sec)   p_kst 1.539787e-01   p_cons 2.478723e-03   p_joint 9.387234e-03

Joint ci ratio: 5.926121e-02	ci left: 8.765547e-03	ci right 9.302904e-03	k: 4335	n:480000
Cons ci ratio: 1.136377e-01	ci left: 2.332356e-03	ci right 2.615370e-03	k: 1186	n:480000
KS ci ratio: 1.326885e-02	ci left: 1.528324e-01	ci right 1.548759e-01	k: 73849	n:480000
ARHGEF3   480000 perm   191 sec   (2518 perm/sec)   p_kst 1.538521e-01   p_cons 2.470833e-03   p_joint 9.031250e-03

Joint ci ratio: 5.687360e-02	ci left: 9.328864e-03	ci right 9.876958e-03	k: 4704	n:490000
Cons ci ratio: 1.125061e-01	ci left: 2.332351e-03	ci right 2.612359e-03	k: 1210	n:490000
KS ci ratio: 1.313456e-02	ci left: 1.528072e-01	ci right 1.548295e-01	k: 75370	n:490000
ARHGEF3   490000 perm   196 sec   (2494 perm/sec)   p_kst 1.538163e-01   p_cons 2.469388e-03   p_joint 9.600000e-03

Joint ci ratio: 5.767006e-02	ci left: 8.891867e-03	ci right 9.421844e-03	k: 4577	n:500000
Cons ci ratio: 1.115436e-01	ci left: 2.326526e-03	ci right 2.603289e-03	k: 1231	n:500000
KS ci ratio: 1.300706e-02	ci left: 1.527273e-01	ci right 1.547288e-01	k: 76863	n:500000
ARHGEF3   500000 perm   202 sec   (2470 perm/sec)   p_kst 1.537260e-01   p_cons 2.462000e-03   p_joint 9.154000e-03

Joint ci ratio: 5.721053e-02	ci left: 8.860526e-03	ci right 9.384289e-03	k: 4651	n:510000
Cons ci ratio: 1.104728e-01	ci left: 2.326661e-03	ci right 2.600609e-03	k: 1255	n:510000
KS ci ratio: 1.288088e-02	ci left: 1.526975e-01	ci right 1.546790e-01	k: 78380	n:510000
ARHGEF3   510000 perm   208 sec   (2447 perm/sec)   p_kst 1.536863e-01   p_cons 2.460784e-03   p_joint 9.119608e-03

Joint ci ratio: 5.672548e-02	ci left: 8.841784e-03	ci right 9.359862e-03	k: 4731	n:520000
Cons ci ratio: 1.099067e-01	ci left: 2.306227e-03	ci right 2.576288e-03	k: 1268	n:520000
KS ci ratio: 1.276274e-02	ci left: 1.525788e-01	ci right 1.545405e-01	k: 79850	n:520000
ARHGEF3   520000 perm   214 sec   (2425 perm/sec)   p_kst 1.535577e-01   p_cons 2.438462e-03   p_joint 9.098077e-03

Joint ci ratio: 5.614082e-02	ci left: 8.859116e-03	ci right 9.372686e-03	k: 4830	n:530000
Cons ci ratio: 1.087135e-01	ci left: 2.314099e-03	ci right 2.581952e-03	k: 1296	n:530000
KS ci ratio: 1.264209e-02	ci left: 1.525813e-01	ci right 1.545244e-01	k: 81382	n:530000
ARHGEF3   530000 perm   221 sec   (2404 perm/sec)   p_kst 1.535509e-01   p_cons 2.445283e-03   p_joint 9.113208e-03

Joint ci ratio: 5.766439e-02	ci left: 8.240431e-03	ci right 8.731531e-03	k: 4581	n:540000
Cons ci ratio: 1.074771e-01	ci left: 2.325300e-03	ci right 2.591194e-03	k: 1326	n:540000
KS ci ratio: 1.252079e-02	ci left: 1.526670e-01	ci right 1.545923e-01	k: 82959	n:540000
ARHGEF3   540000 perm   227 sec   (2382 perm/sec)   p_kst 1.536278e-01   p_cons 2.455556e-03   p_joint 8.483333e-03

Joint ci ratio: 5.708137e-02	ci left: 8.259065e-03	ci right 8.746134e-03	k: 4675	n:550000
Cons ci ratio: 1.063212e-01	ci left: 2.334340e-03	ci right 2.598217e-03	k: 1355	n:550000
KS ci ratio: 1.240204e-02	ci left: 1.527677e-01	ci right 1.546759e-01	k: 84546	n:550000
ARHGEF3   550000 perm   233 sec   (2362 perm/sec)   p_kst 1.537200e-01   p_cons 2.463636e-03   p_joint 8.500000e-03

Joint ci ratio: 5.649776e-02	ci left: 8.282339e-03	ci right 8.765624e-03	k: 4772	n:560000
Cons ci ratio: 1.050877e-01	ci left: 2.348288e-03	ci right 2.610473e-03	k: 1387	n:560000
KS ci ratio: 1.229547e-02	ci left: 1.526779e-01	ci right 1.545685e-01	k: 86028	n:560000
ARHGEF3   560000 perm   239 sec   (2341 perm/sec)   p_kst 1.536214e-01   p_cons 2.476786e-03   p_joint 8.521429e-03

Joint ci ratio: 5.651994e-02	ci left: 8.131828e-03	ci right 8.606522e-03	k: 4769	n:570000
Cons ci ratio: 1.044508e-01	ci left: 2.336132e-03	ci right 2.595282e-03	k: 1404	n:570000
KS ci ratio: 1.218042e-02	ci left: 1.528293e-01	ci right 1.547040e-01	k: 87646	n:570000
ARHGEF3   570000 perm   246 sec   (2321 perm/sec)   p_kst 1.537649e-01   p_cons 2.463158e-03   p_joint 8.366667e-03

Joint ci ratio: 5.501482e-02	ci left: 8.438786e-03	ci right 8.917865e-03	k: 5032	n:580000
Cons ci ratio: 1.034974e-01	ci left: 2.339516e-03	ci right 2.596528e-03	k: 1430	n:580000
KS ci ratio: 1.207790e-02	ci left: 1.527744e-01	ci right 1.546325e-01	k: 89147	n:580000
ARHGEF3   580000 perm   252 sec   (2301 perm/sec)   p_kst 1.537017e-01   p_cons 2.465517e-03   p_joint 8.675862e-03

Joint ci ratio: 5.197491e-02	ci left: 9.300889e-03	ci right 9.798860e-03	k: 5633	n:590000
Cons ci ratio: 1.024640e-01	ci left: 2.347750e-03	ci right 2.602937e-03	k: 1459	n:590000
KS ci ratio: 1.197495e-02	ci left: 1.527856e-01	ci right 1.546279e-01	k: 90686	n:590000
ARHGEF3   590000 perm   259 sec   (2281 perm/sec)   p_kst 1.537051e-01   p_cons 2.472881e-03   p_joint 9.547458e-03

Joint ci ratio: 5.401459e-02	ci left: 8.466559e-03	ci right 8.938203e-03	k: 5220	n:600000
Cons ci ratio: 1.013927e-01	ci left: 2.358972e-03	ci right 2.612537e-03	k: 1490	n:600000
KS ci ratio: 1.187551e-02	ci left: 1.527766e-01	ci right 1.546034e-01	k: 92213	n:600000
ARHGEF3   600000 perm   265 sec   (2262 perm/sec)   p_kst 1.536883e-01   p_cons 2.483333e-03   p_joint 8.700000e-03

Joint ci ratio: 5.409691e-02	ci left: 8.303487e-03	ci right 8.766773e-03	k: 5205	n:610000
Cons ci ratio: 1.004867e-01	ci left: 2.363445e-03	ci right 2.615088e-03	k: 1517	n:610000
KS ci ratio: 1.177650e-02	ci left: 1.528121e-01	ci right 1.546240e-01	k: 93767	n:610000
ARHGEF3   610000 perm   272 sec   (2243 perm/sec)   p_kst 1.537164e-01   p_cons 2.486885e-03   p_joint 8.532787e-03

Joint ci ratio: 5.382504e-02	ci left: 8.253884e-03	ci right 8.712017e-03	k: 5258	n:620000
Cons ci ratio: 9.960467e-02	ci left: 2.367784e-03	ci right 2.617546e-03	k: 1544	n:620000
KS ci ratio: 1.167883e-02	ci left: 1.528707e-01	ci right 1.546681e-01	k: 95336	n:620000
ARHGEF3   620000 perm   279 sec   (2224 perm/sec)   p_kst 1.537677e-01   p_cons 2.490323e-03   p_joint 8.480645e-03

Outputting figure to mutsig2_images.part000000000010/ARHGEF3.9_1943_620000_0.15377_0.0024903_0.0084806.png
                gene_name: ARHGEF3
               theta_stop: 0.100 
                    nperm: 620000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0025 
      ci_cons_bounds_left: 0.0024 
     ci_cons_bounds_right: 0.0026 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0087 

Current progress: 22 percent done.
ARHGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
Cons ci ratio: 4.196429e-02	ci left: 4.560841e-01	ci right 4.757357e-01	k: 4659	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
ARHGEF6   10000 perm   2 sec   (5043 perm/sec)   p_kst 8.050000e-02   p_cons 4.659000e-01   p_joint 1.801000e-01

Joint ci ratio: 6.626847e-02	ci left: 1.439433e-01	ci right 1.538590e-01	k: 2977	n:20000
Cons ci ratio: 2.955372e-02	ci left: 4.610148e-01	ci right 4.748945e-01	k: 9359	n:20000
KS ci ratio: 9.593229e-02	ci left: 7.334198e-02	ci right 8.078153e-02	k: 1540	n:20000
ARHGEF6   20000 perm   4 sec   (4566 perm/sec)   p_kst 7.700000e-02   p_cons 4.679500e-01   p_joint 1.488500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF6.9_2419_20000_0.077_0.46795_0.14885.png
                gene_name: ARHGEF6
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 23 percent done.
ARFGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
ARFGEF1   10000 perm   2 sec   (4239 perm/sec)   p_kst 8.354000e-01   p_cons 1.893000e-01   p_joint 5.508000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF1.8_5706_10000_0.8354_0.1893_0.5508.png
                gene_name: ARFGEF1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 25 percent done.
ARHGAP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
ARHGAP20   10000 perm   2 sec   (4395 perm/sec)   p_kst 2.670000e-02   p_cons 1.500000e-03   p_joint 1.690000e-02

Joint ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
Cons ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
KS ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
ARHGAP20   20000 perm   5 sec   (4022 perm/sec)   p_kst 2.550000e-02   p_cons 1.450000e-03   p_joint 4.900000e-03

Joint ci ratio: 3.341371e-01	ci left: 3.804809e-03	ci right 5.360201e-03	k: 136	n:30000
Cons ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
KS ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
ARHGAP20   30000 perm   8 sec   (3827 perm/sec)   p_kst 2.746667e-02   p_cons 1.400000e-03   p_joint 4.533333e-03

Joint ci ratio: 3.355611e-01	ci left: 2.830454e-03	ci right 3.993482e-03	k: 135	n:40000
Cons ci ratio: 4.784970e-01	ci left: 1.276333e-03	ci right 2.098733e-03	k: 66	n:40000
KS ci ratio: 1.150050e-01	ci left: 2.659952e-02	ci right 2.986945e-02	k: 1128	n:40000
ARHGAP20   40000 perm   11 sec   (3735 perm/sec)   p_kst 2.820000e-02   p_cons 1.650000e-03   p_joint 3.375000e-03

Joint ci ratio: 3.935807e-01	ci left: 1.591500e-03	ci right 2.388100e-03	k: 98	n:50000
Cons ci ratio: 4.975268e-01	ci left: 9.333279e-04	ci right 1.566869e-03	k: 61	n:50000
KS ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
ARHGAP20   50000 perm   14 sec   (3673 perm/sec)   p_kst 2.794000e-02   p_cons 1.220000e-03   p_joint 1.960000e-03

Joint ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
Cons ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
KS ci ratio: 9.540489e-02	ci left: 2.605951e-02	ci right 2.868647e-02	k: 1641	n:60000
ARHGAP20   60000 perm   17 sec   (3615 perm/sec)   p_kst 2.735000e-02   p_cons 1.250000e-03   p_joint 1.716667e-03

Joint ci ratio: 3.186586e-01	ci left: 1.813945e-03	ci right 2.514063e-03	k: 150	n:70000
Cons ci ratio: 3.956997e-01	ci left: 1.123860e-03	ci right 1.690196e-03	k: 97	n:70000
KS ci ratio: 8.862958e-02	ci left: 2.597951e-02	ci right 2.840276e-02	k: 1902	n:70000
ARHGAP20   70000 perm   20 sec   (3558 perm/sec)   p_kst 2.717143e-02   p_cons 1.385714e-03   p_joint 2.142857e-03

Joint ci ratio: 3.145548e-01	ci left: 1.633204e-03	ci right 2.253807e-03	k: 154	n:80000
Cons ci ratio: 3.684998e-01	ci left: 1.152891e-03	ci right 1.684324e-03	k: 112	n:80000
KS ci ratio: 8.359664e-02	ci left: 2.563060e-02	ci right 2.787890e-02	k: 2139	n:80000
ARHGAP20   80000 perm   23 sec   (3505 perm/sec)   p_kst 2.673750e-02   p_cons 1.400000e-03   p_joint 1.925000e-03

Joint ci ratio: 3.879157e-01	ci left: 9.141585e-04	ci right 1.363437e-03	k: 101	n:90000
Cons ci ratio: 3.489749e-01	ci left: 1.156227e-03	ci right 1.654578e-03	k: 125	n:90000
KS ci ratio: 7.855627e-02	ci left: 2.586360e-02	ci right 2.798927e-02	k: 2422	n:90000
ARHGAP20   90000 perm   26 sec   (3450 perm/sec)   p_kst 2.691111e-02   p_cons 1.388889e-03   p_joint 1.122222e-03

Joint ci ratio: 3.735498e-01	ci left: 8.950862e-04	ci right 1.314717e-03	k: 109	n:100000
Cons ci ratio: 3.310668e-01	ci left: 1.168660e-03	ci right 1.641021e-03	k: 139	n:100000
KS ci ratio: 7.425935e-02	ci left: 2.610234e-02	ci right 2.812521e-02	k: 2710	n:100000
ARHGAP20   100000 perm   29 sec   (3403 perm/sec)   p_kst 2.710000e-02   p_cons 1.390000e-03   p_joint 1.090000e-03

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 3.177328e-01	ci left: 1.162628e-03	ci right 1.609780e-03	k: 151	n:110000
KS ci ratio: 7.095163e-02	ci left: 2.604117e-02	ci right 2.796569e-02	k: 2969	n:110000
ARHGAP20   110000 perm   33 sec   (3357 perm/sec)   p_kst 2.699091e-02   p_cons 1.372727e-03   p_joint 1.045455e-03

Joint ci ratio: 3.653652e-01	ci left: 7.836948e-04	ci right 1.141131e-03	k: 114	n:120000
Cons ci ratio: 3.077750e-01	ci left: 1.142535e-03	ci right 1.565487e-03	k: 161	n:120000
KS ci ratio: 6.787723e-02	ci left: 2.612300e-02	ci right 2.796661e-02	k: 3244	n:120000
ARHGAP20   120000 perm   36 sec   (3312 perm/sec)   p_kst 2.703333e-02   p_cons 1.341667e-03   p_joint 9.500000e-04

Joint ci ratio: 3.653788e-01	ci left: 7.234062e-04	ci right 1.053359e-03	k: 114	n:130000
Cons ci ratio: 2.995715e-01	ci left: 1.118602e-03	ci right 1.519558e-03	k: 170	n:130000
KS ci ratio: 6.513268e-02	ci left: 2.622405e-02	ci right 2.799713e-02	k: 3523	n:130000
ARHGAP20   130000 perm   40 sec   (3270 perm/sec)   p_kst 2.710000e-02   p_cons 1.307692e-03   p_joint 8.769231e-04

Joint ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
Cons ci ratio: 2.895843e-01	ci left: 1.118085e-03	ci right 1.503047e-03	k: 182	n:140000
KS ci ratio: 6.271315e-02	ci left: 2.629788e-02	ci right 2.800749e-02	k: 3800	n:140000
ARHGAP20   140000 perm   43 sec   (3227 perm/sec)   p_kst 2.714286e-02   p_cons 1.300000e-03   p_joint 7.714286e-04

Joint ci ratio: 3.654005e-01	ci left: 6.269459e-04	ci right 9.129223e-04	k: 114	n:150000
Cons ci ratio: 2.812566e-01	ci left: 1.111630e-03	ci right 1.481413e-03	k: 193	n:150000
KS ci ratio: 6.085988e-02	ci left: 2.609363e-02	ci right 2.773806e-02	k: 4036	n:150000
ARHGAP20   150000 perm   47 sec   (3177 perm/sec)   p_kst 2.690667e-02   p_cons 1.286667e-03   p_joint 7.600000e-04

Joint ci ratio: 3.670097e-01	ci left: 5.820843e-04	ci right 8.490466e-04	k: 113	n:160000
Cons ci ratio: 2.703273e-01	ci left: 1.135243e-03	ci right 1.495718e-03	k: 209	n:160000
KS ci ratio: 5.907648e-02	ci left: 2.598949e-02	ci right 2.757772e-02	k: 4284	n:160000
ARHGAP20   160000 perm   51 sec   (3137 perm/sec)   p_kst 2.677500e-02   p_cons 1.306250e-03   p_joint 7.062500e-04

Joint ci ratio: 3.276680e-01	ci left: 7.036056e-04	ci right 9.844564e-04	k: 142	n:170000
Cons ci ratio: 2.512876e-01	ci left: 1.249917e-03	ci right 1.614485e-03	k: 242	n:170000
KS ci ratio: 5.729847e-02	ci left: 2.602583e-02	ci right 2.756683e-02	k: 4554	n:170000
ARHGAP20   170000 perm   55 sec   (3099 perm/sec)   p_kst 2.678824e-02   p_cons 1.423529e-03   p_joint 8.352941e-04

Joint ci ratio: 2.324250e-01	ci left: 1.394484e-03	ci right 1.766310e-03	k: 283	n:180000
Cons ci ratio: 2.443476e-01	ci left: 1.253426e-03	ci right 1.607389e-03	k: 256	n:180000
KS ci ratio: 5.578487e-02	ci left: 2.595466e-02	ci right 2.744953e-02	k: 4805	n:180000
ARHGAP20   180000 perm   59 sec   (3060 perm/sec)   p_kst 2.669444e-02   p_cons 1.422222e-03   p_joint 1.572222e-03

Joint ci ratio: 2.401817e-01	ci left: 1.231947e-03	ci right 1.573030e-03	k: 265	n:190000
Cons ci ratio: 2.328456e-01	ci left: 1.316127e-03	ci right 1.667786e-03	k: 282	n:190000
KS ci ratio: 5.405120e-02	ci left: 2.620827e-02	ci right 2.766937e-02	k: 5117	n:190000
ARHGAP20   190000 perm   63 sec   (3023 perm/sec)   p_kst 2.693158e-02   p_cons 1.484211e-03   p_joint 1.394737e-03

Joint ci ratio: 2.349419e-01	ci left: 1.226779e-03	ci right 1.557944e-03	k: 277	n:200000
Cons ci ratio: 2.269097e-01	ci left: 1.321003e-03	ci right 1.663707e-03	k: 297	n:200000
KS ci ratio: 5.263427e-02	ci left: 2.627427e-02	ci right 2.769949e-02	k: 5396	n:200000
ARHGAP20   200000 perm   67 sec   (2986 perm/sec)   p_kst 2.698000e-02   p_cons 1.485000e-03   p_joint 1.385000e-03

Joint ci ratio: 1.422175e-01	ci left: 3.348334e-03	ci right 3.865517e-03	k: 756	n:210000
Cons ci ratio: 2.099594e-01	ci left: 1.483199e-03	ci right 1.835548e-03	k: 347	n:210000
KS ci ratio: 5.123978e-02	ci left: 2.641908e-02	ci right 2.781306e-02	k: 5693	n:210000
ARHGAP20   210000 perm   71 sec   (2951 perm/sec)   p_kst 2.710952e-02   p_cons 1.652381e-03   p_joint 3.600000e-03

Joint ci ratio: 1.408358e-01	ci left: 3.261895e-03	ci right 3.760419e-03	k: 771	n:220000
Cons ci ratio: 2.036192e-01	ci left: 1.510605e-03	ci right 1.857281e-03	k: 369	n:220000
KS ci ratio: 5.007095e-02	ci left: 2.642545e-02	ci right 2.778704e-02	k: 5962	n:220000
ARHGAP20   220000 perm   75 sec   (2916 perm/sec)   p_kst 2.710000e-02   p_cons 1.677273e-03   p_joint 3.504545e-03

Joint ci ratio: 1.386124e-01	ci left: 3.224965e-03	ci right 3.709421e-03	k: 796	n:230000
Cons ci ratio: 1.998742e-01	ci left: 1.502721e-03	ci right 1.840471e-03	k: 383	n:230000
KS ci ratio: 4.900287e-02	ci left: 2.640583e-02	ci right 2.773656e-02	k: 6225	n:230000
ARHGAP20   230000 perm   80 sec   (2881 perm/sec)   p_kst 2.706522e-02   p_cons 1.665217e-03   p_joint 3.460870e-03

Joint ci ratio: 1.457687e-01	ci left: 2.785136e-03	ci right 3.227002e-03	k: 720	n:240000
Cons ci ratio: 1.929583e-01	ci left: 1.551042e-03	ci right 1.886175e-03	k: 411	n:240000
KS ci ratio: 4.793964e-02	ci left: 2.645401e-02	ci right 2.775744e-02	k: 6504	n:240000
ARHGAP20   240000 perm   84 sec   (2849 perm/sec)   p_kst 2.710000e-02   p_cons 1.712500e-03   p_joint 3.000000e-03

Joint ci ratio: 1.454743e-01	ci left: 2.685283e-03	ci right 3.110371e-03	k: 723	n:250000
Cons ci ratio: 1.893177e-01	ci left: 1.549938e-03	ci right 1.877787e-03	k: 427	n:250000
KS ci ratio: 4.691786e-02	ci left: 2.652630e-02	ci right 2.780469e-02	k: 6790	n:250000
ARHGAP20   250000 perm   89 sec   (2819 perm/sec)   p_kst 2.716000e-02   p_cons 1.708000e-03   p_joint 2.892000e-03

Joint ci ratio: 1.425506e-01	ci left: 2.693231e-03	ci right 3.110280e-03	k: 753	n:260000
Cons ci ratio: 1.884440e-01	ci left: 1.504979e-03	ci right 1.821680e-03	k: 431	n:260000
KS ci ratio: 4.602900e-02	ci left: 2.651344e-02	ci right 2.776636e-02	k: 7055	n:260000
ARHGAP20   260000 perm   93 sec   (2789 perm/sec)   p_kst 2.713462e-02   p_cons 1.657692e-03   p_joint 2.896154e-03

Joint ci ratio: 1.415267e-01	ci left: 2.632769e-03	ci right 3.037279e-03	k: 764	n:270000
Cons ci ratio: 1.858816e-01	ci left: 1.491600e-03	ci right 1.800737e-03	k: 443	n:270000
KS ci ratio: 4.523647e-02	ci left: 2.644680e-02	ci right 2.767449e-02	k: 7305	n:270000
ARHGAP20   270000 perm   98 sec   (2760 perm/sec)   p_kst 2.705556e-02   p_cons 1.640741e-03   p_joint 2.829630e-03

Joint ci ratio: 1.440089e-01	ci left: 2.449184e-03	ci right 2.832654e-03	k: 738	n:280000
Cons ci ratio: 1.830194e-01	ci left: 1.486020e-03	ci right 1.788731e-03	k: 457	n:280000
KS ci ratio: 4.438700e-02	ci left: 2.649815e-02	ci right 2.770453e-02	k: 7587	n:280000
ARHGAP20   280000 perm   103 sec   (2731 perm/sec)   p_kst 2.709643e-02   p_cons 1.632143e-03   p_joint 2.635714e-03

Joint ci ratio: 1.474559e-01	ci left: 2.251746e-03	ci right 2.613485e-03	k: 704	n:290000
Cons ci ratio: 1.791485e-01	ci left: 1.500618e-03	ci right 1.799138e-03	k: 477	n:290000
KS ci ratio: 4.369220e-02	ci left: 2.641651e-02	ci right 2.759987e-02	k: 7831	n:290000
ARHGAP20   290000 perm   107 sec   (2703 perm/sec)   p_kst 2.700345e-02   p_cons 1.644828e-03   p_joint 2.427586e-03

Joint ci ratio: 1.458127e-01	ci left: 2.228062e-03	ci right 2.581660e-03	k: 720	n:300000
Cons ci ratio: 1.762236e-01	ci left: 1.501559e-03	ci right 1.794869e-03	k: 493	n:300000
KS ci ratio: 4.298529e-02	ci left: 2.639322e-02	ci right 2.755594e-02	k: 8091	n:300000
ARHGAP20   300000 perm   112 sec   (2675 perm/sec)   p_kst 2.697000e-02   p_cons 1.643333e-03   p_joint 2.400000e-03

Joint ci ratio: 1.487417e-01	ci left: 2.069182e-03	ci right 2.404748e-03	k: 692	n:310000
Cons ci ratio: 1.732673e-01	ci left: 1.505562e-03	ci right 1.794205e-03	k: 510	n:310000
KS ci ratio: 4.232984e-02	ci left: 2.634924e-02	ci right 2.749189e-02	k: 8344	n:310000
ARHGAP20   310000 perm   117 sec   (2648 perm/sec)   p_kst 2.691613e-02   p_cons 1.645161e-03   p_joint 2.232258e-03

Joint ci ratio: 1.493965e-01	ci left: 1.986463e-03	ci right 2.310159e-03	k: 686	n:320000
Cons ci ratio: 1.714335e-01	ci left: 1.491405e-03	ci right 1.773994e-03	k: 521	n:320000
KS ci ratio: 4.162148e-02	ci left: 2.641021e-02	ci right 2.753588e-02	k: 8630	n:320000
ARHGAP20   320000 perm   122 sec   (2625 perm/sec)   p_kst 2.696875e-02   p_cons 1.628125e-03   p_joint 2.143750e-03

Joint ci ratio: 1.470602e-01	ci left: 1.990461e-03	ci right 2.309291e-03	k: 708	n:330000
Cons ci ratio: 1.682398e-01	ci left: 1.504241e-03	ci right 1.783415e-03	k: 541	n:330000
KS ci ratio: 4.106364e-02	ci left: 2.632063e-02	ci right 2.742709e-02	k: 8867	n:330000
ARHGAP20   330000 perm   127 sec   (2601 perm/sec)   p_kst 2.686970e-02   p_cons 1.639394e-03   p_joint 2.145455e-03

Joint ci ratio: 1.523218e-01	ci left: 1.796014e-03	ci right 2.094930e-03	k: 660	n:340000
Cons ci ratio: 1.664089e-01	ci left: 1.493814e-03	ci right 1.767733e-03	k: 553	n:340000
KS ci ratio: 4.046601e-02	ci left: 2.631505e-02	ci right 2.740480e-02	k: 9131	n:340000
ARHGAP20   340000 perm   132 sec   (2575 perm/sec)   p_kst 2.685588e-02   p_cons 1.626471e-03   p_joint 1.941176e-03

Joint ci ratio: 1.501788e-01	ci left: 1.796931e-03	ci right 2.091413e-03	k: 679	n:350000
Cons ci ratio: 1.639128e-01	ci left: 1.497698e-03	ci right 1.767804e-03	k: 570	n:350000
KS ci ratio: 3.983280e-02	ci left: 2.638912e-02	ci right 2.746444e-02	k: 9423	n:350000
ARHGAP20   350000 perm   137 sec   (2551 perm/sec)   p_kst 2.692286e-02   p_cons 1.628571e-03   p_joint 1.940000e-03

Joint ci ratio: 1.561638e-01	ci left: 1.610765e-03	ci right 1.886243e-03	k: 628	n:360000
Cons ci ratio: 1.836560e-01	ci left: 1.147823e-03	ci right 1.382545e-03	k: 454	n:360000
KS ci ratio: 3.924501e-02	ci left: 2.643719e-02	ci right 2.749822e-02	k: 9707	n:360000
ARHGAP20   360000 perm   142 sec   (2527 perm/sec)   p_kst 2.696389e-02   p_cons 1.261111e-03   p_joint 1.744444e-03

Joint ci ratio: 1.632059e-01	ci left: 1.429698e-03	ci right 1.686318e-03	k: 575	n:370000
Cons ci ratio: 1.822608e-01	ci left: 1.134853e-03	ci right 1.364964e-03	k: 461	n:370000
KS ci ratio: 3.871437e-02	ci left: 2.643994e-02	ci right 2.748641e-02	k: 9975	n:370000
ARHGAP20   370000 perm   148 sec   (2503 perm/sec)   p_kst 2.695946e-02   p_cons 1.245946e-03   p_joint 1.554054e-03

Joint ci ratio: 1.616705e-01	ci left: 1.419844e-03	ci right 1.672065e-03	k: 586	n:380000
Cons ci ratio: 1.805119e-01	ci left: 1.127597e-03	ci right 1.353803e-03	k: 470	n:380000
KS ci ratio: 3.818744e-02	ci left: 2.646610e-02	ci right 2.749903e-02	k: 10252	n:380000
ARHGAP20   380000 perm   153 sec   (2480 perm/sec)   p_kst 2.697895e-02   p_cons 1.236842e-03   p_joint 1.542105e-03

Joint ci ratio: 1.620891e-01	ci left: 1.376055e-03	ci right 1.621191e-03	k: 583	n:390000
Cons ci ratio: 1.788123e-01	ci left: 1.120723e-03	ci right 1.343204e-03	k: 479	n:390000
KS ci ratio: 3.773860e-02	ci left: 2.641224e-02	ci right 2.743070e-02	k: 10498	n:390000
ARHGAP20   390000 perm   159 sec   (2456 perm/sec)   p_kst 2.691795e-02   p_cons 1.228205e-03   p_joint 1.494872e-03

Joint ci ratio: 1.597798e-01	ci left: 1.382442e-03	ci right 1.624871e-03	k: 600	n:400000
Cons ci ratio: 1.769788e-01	ci left: 1.116591e-03	ci right 1.335737e-03	k: 489	n:400000
KS ci ratio: 3.729094e-02	ci left: 2.638097e-02	ci right 2.738590e-02	k: 10752	n:400000
ARHGAP20   400000 perm   164 sec   (2433 perm/sec)   p_kst 2.688000e-02   p_cons 1.222500e-03   p_joint 1.500000e-03

Joint ci ratio: 1.578224e-01	ci left: 1.383855e-03	ci right 1.623278e-03	k: 615	n:410000
Cons ci ratio: 1.745031e-01	ci left: 1.122002e-03	ci right 1.338804e-03	k: 503	n:410000
KS ci ratio: 3.681248e-02	ci left: 2.641656e-02	ci right 2.740965e-02	k: 11033	n:410000
ARHGAP20   410000 perm   170 sec   (2411 perm/sec)   p_kst 2.690976e-02   p_cons 1.226829e-03   p_joint 1.500000e-03

Joint ci ratio: 1.627971e-01	ci left: 1.266338e-03	ci right 1.493011e-03	k: 578	n:420000
Cons ci ratio: 1.722951e-01	ci left: 1.124897e-03	ci right 1.339222e-03	k: 516	n:420000
KS ci ratio: 3.633053e-02	ci left: 2.648121e-02	ci right 2.746343e-02	k: 11327	n:420000
ARHGAP20   420000 perm   176 sec   (2389 perm/sec)   p_kst 2.696905e-02   p_cons 1.228571e-03   p_joint 1.376190e-03

Joint ci ratio: 1.603233e-01	ci left: 1.277057e-03	ci right 1.501841e-03	k: 596	n:430000
Cons ci ratio: 1.701688e-01	ci left: 1.127674e-03	ci right 1.339604e-03	k: 529	n:430000
KS ci ratio: 3.592425e-02	ci left: 2.645994e-02	ci right 2.743017e-02	k: 11585	n:430000
ARHGAP20   430000 perm   182 sec   (2368 perm/sec)   p_kst 2.694186e-02   p_cons 1.230233e-03   p_joint 1.386047e-03

Joint ci ratio: 1.596578e-01	ci left: 1.258941e-03	ci right 1.479527e-03	k: 601	n:440000
Cons ci ratio: 1.695318e-01	ci left: 1.110748e-03	ci right 1.318637e-03	k: 533	n:440000
KS ci ratio: 3.554827e-02	ci left: 2.641491e-02	ci right 2.737315e-02	k: 11832	n:440000
ARHGAP20   440000 perm   187 sec   (2347 perm/sec)   p_kst 2.689091e-02   p_cons 1.211364e-03   p_joint 1.365909e-03

Joint ci ratio: 1.578330e-01	ci left: 1.260840e-03	ci right 1.478995e-03	k: 615	n:450000
Cons ci ratio: 1.678125e-01	ci left: 1.109477e-03	ci right 1.314809e-03	k: 544	n:450000
KS ci ratio: 3.510925e-02	ci left: 2.648210e-02	ci right 2.743067e-02	k: 12129	n:450000
ARHGAP20   450000 perm   193 sec   (2326 perm/sec)   p_kst 2.695333e-02   p_cons 1.208889e-03   p_joint 1.366667e-03

Joint ci ratio: 1.559455e-01	ci left: 1.264759e-03	ci right 1.480731e-03	k: 630	n:460000
Cons ci ratio: 1.668974e-01	ci left: 1.097855e-03	ci right 1.299816e-03	k: 550	n:460000
KS ci ratio: 3.466890e-02	ci left: 2.657230e-02	ci right 2.751193e-02	k: 12438	n:460000
ARHGAP20   460000 perm   199 sec   (2306 perm/sec)   p_kst 2.703913e-02   p_cons 1.195652e-03   p_joint 1.369565e-03

Joint ci ratio: 1.544838e-01	ci left: 1.262389e-03	ci right 1.475749e-03	k: 642	n:470000
Cons ci ratio: 1.654036e-01	ci left: 1.094888e-03	ci right 1.294321e-03	k: 560	n:470000
KS ci ratio: 3.424333e-02	ci left: 2.666085e-02	ci right 2.759180e-02	k: 12748	n:470000
ARHGAP20   470000 perm   206 sec   (2286 perm/sec)   p_kst 2.712340e-02   p_cons 1.191489e-03   p_joint 1.365957e-03

Joint ci ratio: 1.530624e-01	ci left: 1.260127e-03	ci right 1.470965e-03	k: 654	n:480000
Cons ci ratio: 1.639491e-01	ci left: 1.092053e-03	ci right 1.289048e-03	k: 570	n:480000
KS ci ratio: 3.387974e-02	ci left: 2.667345e-02	ci right 2.759477e-02	k: 13023	n:480000
ARHGAP20   480000 perm   212 sec   (2266 perm/sec)   p_kst 2.713125e-02   p_cons 1.187500e-03   p_joint 1.362500e-03

Joint ci ratio: 1.599352e-01	ci left: 1.126553e-03	ci right 1.324318e-03	k: 599	n:490000
Cons ci ratio: 1.629541e-01	ci left: 1.083467e-03	ci right 1.277611e-03	k: 577	n:490000
KS ci ratio: 3.355604e-02	ci left: 2.664106e-02	ci right 2.755229e-02	k: 13276	n:490000
ARHGAP20   490000 perm   218 sec   (2247 perm/sec)   p_kst 2.709388e-02   p_cons 1.177551e-03   p_joint 1.222449e-03

Joint ci ratio: 1.577157e-01	ci left: 1.136671e-03	ci right 1.333182e-03	k: 616	n:500000
Cons ci ratio: 1.608795e-01	ci left: 1.090582e-03	ci right 1.283273e-03	k: 592	n:500000
KS ci ratio: 3.321621e-02	ci left: 2.664969e-02	ci right 2.755181e-02	k: 13549	n:500000
ARHGAP20   500000 perm   224 sec   (2227 perm/sec)   p_kst 2.709800e-02   p_cons 1.184000e-03   p_joint 1.232000e-03

Joint ci ratio: 1.557091e-01	ci left: 1.144526e-03	ci right 1.339642e-03	k: 632	n:510000
Cons ci ratio: 1.588820e-01	ci left: 1.097434e-03	ci right 1.288698e-03	k: 607	n:510000
KS ci ratio: 3.289874e-02	ci left: 2.663856e-02	ci right 2.753153e-02	k: 13812	n:510000
ARHGAP20   510000 perm   231 sec   (2209 perm/sec)   p_kst 2.708235e-02   p_cons 1.190196e-03   p_joint 1.239216e-03

Joint ci ratio: 1.543738e-01	ci left: 1.142849e-03	ci right 1.335854e-03	k: 643	n:520000
Cons ci ratio: 1.568313e-01	ci left: 1.105883e-03	ci right 1.295898e-03	k: 623	n:520000
KS ci ratio: 3.260330e-02	ci left: 2.660692e-02	ci right 2.749066e-02	k: 14064	n:520000
ARHGAP20   520000 perm   237 sec   (2191 perm/sec)   p_kst 2.704615e-02   p_cons 1.198077e-03   p_joint 1.236538e-03

Joint ci ratio: 1.621212e-01	ci left: 1.012553e-03	ci right 1.192972e-03	k: 583	n:530000
Cons ci ratio: 1.544958e-01	ci left: 1.119471e-03	ci right 1.308691e-03	k: 642	n:530000
KS ci ratio: 3.230871e-02	ci left: 2.658774e-02	ci right 2.746272e-02	k: 14322	n:530000
ARHGAP20   530000 perm   244 sec   (2173 perm/sec)   p_kst 2.702264e-02   p_cons 1.211321e-03   p_joint 1.100000e-03

Joint ci ratio: 1.625413e-01	ci left: 9.884710e-04	ci right 1.165100e-03	k: 580	n:540000
Cons ci ratio: 1.535441e-01	ci left: 1.112983e-03	ci right 1.299842e-03	k: 650	n:540000
KS ci ratio: 3.200393e-02	ci left: 2.659871e-02	ci right 2.746564e-02	k: 14596	n:540000
ARHGAP20   540000 perm   251 sec   (2156 perm/sec)   p_kst 2.702963e-02   p_cons 1.203704e-03   p_joint 1.074074e-03

Joint ci ratio: 1.607525e-01	ci left: 9.931793e-04	ci right 1.168508e-03	k: 593	n:550000
Cons ci ratio: 1.524941e-01	ci left: 1.108484e-03	ci right 1.293198e-03	k: 659	n:550000
KS ci ratio: 3.169009e-02	ci left: 2.663818e-02	ci right 2.749772e-02	k: 14886	n:550000
ARHGAP20   550000 perm   257 sec   (2139 perm/sec)   p_kst 2.706545e-02   p_cons 1.198182e-03   p_joint 1.078182e-03

Joint ci ratio: 1.586296e-01	ci left: 1.002874e-03	ci right 1.177354e-03	k: 609	n:560000
Cons ci ratio: 1.507898e-01	ci left: 1.114460e-03	ci right 1.297906e-03	k: 674	n:560000
KS ci ratio: 3.139488e-02	ci left: 2.666033e-02	ci right 2.751243e-02	k: 15167	n:560000
ARHGAP20   560000 perm   264 sec   (2122 perm/sec)   p_kst 2.708393e-02   p_cons 1.203571e-03   p_joint 1.087500e-03

Joint ci ratio: 1.575999e-01	ci left: 9.987593e-04	ci right 1.171288e-03	k: 617	n:570000
Cons ci ratio: 1.416326e-01	ci left: 1.247037e-03	ci right 1.438790e-03	k: 764	n:570000
KS ci ratio: 3.112745e-02	ci left: 2.664866e-02	ci right 2.749300e-02	k: 15429	n:570000
ARHGAP20   570000 perm   271 sec   (2106 perm/sec)   p_kst 2.706842e-02   p_cons 1.340351e-03   p_joint 1.082456e-03

Joint ci ratio: 1.555978e-01	ci left: 1.008045e-03	ci right 1.179760e-03	k: 633	n:580000
Cons ci ratio: 1.400843e-01	ci left: 1.253815e-03	ci right 1.444326e-03	k: 781	n:580000
KS ci ratio: 3.083242e-02	ci left: 2.669560e-02	ci right 2.753327e-02	k: 15725	n:580000
ARHGAP20   580000 perm   278 sec   (2090 perm/sec)   p_kst 2.711207e-02   p_cons 1.346552e-03   p_joint 1.091379e-03

Joint ci ratio: 1.542653e-01	ci left: 1.008881e-03	ci right 1.179130e-03	k: 644	n:590000
Cons ci ratio: 1.391975e-01	ci left: 1.248920e-03	ci right 1.437387e-03	k: 791	n:590000
KS ci ratio: 3.056916e-02	ci left: 2.670061e-02	ci right 2.753116e-02	k: 15997	n:590000
ARHGAP20   590000 perm   285 sec   (2073 perm/sec)   p_kst 2.711356e-02   p_cons 1.340678e-03   p_joint 1.091525e-03

Joint ci ratio: 1.516985e-01	ci left: 1.027330e-03	ci right 1.197546e-03	k: 666	n:600000
Cons ci ratio: 1.371340e-01	ci left: 1.266723e-03	ci right 1.454811e-03	k: 815	n:600000
KS ci ratio: 3.030967e-02	ci left: 2.671045e-02	ci right 2.753413e-02	k: 16272	n:600000
ARHGAP20   600000 perm   292 sec   (2057 perm/sec)   p_kst 2.712000e-02   p_cons 1.358333e-03   p_joint 1.110000e-03

Joint ci ratio: 1.507972e-01	ci left: 1.023107e-03	ci right 1.191525e-03	k: 674	n:610000
Cons ci ratio: 1.358905e-01	ci left: 1.269708e-03	ci right 1.456391e-03	k: 830	n:610000
KS ci ratio: 3.007162e-02	ci left: 2.669395e-02	ci right 2.751055e-02	k: 16531	n:610000
ARHGAP20   610000 perm   299 sec   (2042 perm/sec)   p_kst 2.710000e-02   p_cons 1.360656e-03   p_joint 1.104918e-03

Joint ci ratio: 1.500219e-01	ci left: 1.017470e-03	ci right 1.184022e-03	k: 681	n:620000
Cons ci ratio: 1.350806e-01	ci left: 1.264811e-03	ci right 1.449577e-03	k: 840	n:620000
KS ci ratio: 2.983726e-02	ci left: 2.668122e-02	ci right 2.749095e-02	k: 16792	n:620000
ARHGAP20   620000 perm   306 sec   (2026 perm/sec)   p_kst 2.708387e-02   p_cons 1.354839e-03   p_joint 1.098387e-03

Joint ci ratio: 1.491500e-01	ci left: 1.013543e-03	ci right 1.178402e-03	k: 689	n:630000
Cons ci ratio: 1.341272e-01	ci left: 1.263140e-03	ci right 1.446256e-03	k: 852	n:630000
KS ci ratio: 2.959671e-02	ci left: 2.668939e-02	ci right 2.749274e-02	k: 17066	n:630000
ARHGAP20   630000 perm   313 sec   (2010 perm/sec)   p_kst 2.708889e-02   p_cons 1.352381e-03   p_joint 1.093651e-03

Joint ci ratio: 1.483996e-01	ci left: 1.008236e-03	ci right 1.171334e-03	k: 696	n:640000
Cons ci ratio: 1.332710e-01	ci left: 1.260016e-03	ci right 1.441421e-03	k: 863	n:640000
KS ci ratio: 2.937494e-02	ci left: 2.667407e-02	ci right 2.747084e-02	k: 17325	n:640000
ARHGAP20   640000 perm   321 sec   (1995 perm/sec)   p_kst 2.707031e-02   p_cons 1.348438e-03   p_joint 1.087500e-03

Joint ci ratio: 1.591647e-01	ci left: 8.581002e-04	ci right 1.007944e-03	k: 605	n:650000
Cons ci ratio: 1.319036e-01	ci left: 1.267405e-03	ci right 1.447855e-03	k: 881	n:650000
KS ci ratio: 2.913850e-02	ci left: 2.669438e-02	ci right 2.748523e-02	k: 17607	n:650000
ARHGAP20   650000 perm   328 sec   (1980 perm/sec)   p_kst 2.708769e-02   p_cons 1.355385e-03   p_joint 9.307692e-04

Joint ci ratio: 1.595617e-01	ci left: 8.407339e-04	ci right 9.879459e-04	k: 602	n:660000
Cons ci ratio: 1.310155e-01	ci left: 1.265786e-03	ci right 1.444697e-03	k: 893	n:660000
KS ci ratio: 2.892597e-02	ci left: 2.668100e-02	ci right 2.746559e-02	k: 17867	n:660000
ARHGAP20   660000 perm   336 sec   (1965 perm/sec)   p_kst 2.707121e-02   p_cons 1.353030e-03   p_joint 9.121212e-04

Joint ci ratio: 1.583841e-01	ci left: 8.410841e-04	ci right 9.871672e-04	k: 611	n:670000
Cons ci ratio: 1.295026e-01	ci left: 1.277216e-03	ci right 1.455498e-03	k: 914	n:670000
KS ci ratio: 2.870176e-02	ci left: 2.669768e-02	ci right 2.747657e-02	k: 18147	n:670000
ARHGAP20   670000 perm   343 sec   (1951 perm/sec)   p_kst 2.708507e-02   p_cons 1.364179e-03   p_joint 9.119403e-04

Joint ci ratio: 1.572322e-01	ci left: 8.414279e-04	ci right 9.864076e-04	k: 620	n:680000
Cons ci ratio: 1.284538e-01	ci left: 1.279781e-03	ci right 1.456864e-03	k: 929	n:680000
KS ci ratio: 2.849619e-02	ci left: 2.668906e-02	ci right 2.746204e-02	k: 18410	n:680000
ARHGAP20   680000 perm   351 sec   (1937 perm/sec)   p_kst 2.707353e-02   p_cons 1.366176e-03   p_joint 9.117647e-04

Joint ci ratio: 1.561051e-01	ci left: 8.417654e-04	ci right 9.856662e-04	k: 629	n:690000
Cons ci ratio: 1.274302e-01	ci left: 1.282277e-03	ci right 1.458184e-03	k: 944	n:690000
KS ci ratio: 2.827630e-02	ci left: 2.671526e-02	ci right 2.748292e-02	k: 18697	n:690000
ARHGAP20   690000 perm   359 sec   (1923 perm/sec)   p_kst 2.709710e-02   p_cons 1.368116e-03   p_joint 9.115942e-04

Joint ci ratio: 1.543985e-01	ci left: 8.489635e-04	ci right 9.923613e-04	k: 643	n:700000
Cons ci ratio: 1.264966e-01	ci left: 1.283323e-03	ci right 1.457988e-03	k: 958	n:700000
KS ci ratio: 2.805839e-02	ci left: 2.674640e-02	ci right 2.750895e-02	k: 18988	n:700000
ARHGAP20   700000 perm   367 sec   (1909 perm/sec)   p_kst 2.712571e-02   p_cons 1.368571e-03   p_joint 9.185714e-04

Joint ci ratio: 1.534484e-01	ci left: 8.478398e-04	ci right 9.900857e-04	k: 651	n:710000
Cons ci ratio: 1.255186e-01	ci left: 1.285709e-03	ci right 1.459245e-03	k: 973	n:710000
KS ci ratio: 2.787220e-02	ci left: 2.672633e-02	ci right 2.748317e-02	k: 19243	n:710000
ARHGAP20   710000 perm   375 sec   (1895 perm/sec)   p_kst 2.710282e-02   p_cons 1.370423e-03   p_joint 9.169014e-04

Joint ci ratio: 1.541610e-01	ci left: 8.280510e-04	ci right 9.676816e-04	k: 645	n:720000
Cons ci ratio: 1.244371e-01	ci left: 1.290725e-03	ci right 1.463326e-03	k: 990	n:720000
KS ci ratio: 2.773136e-02	ci left: 2.662820e-02	ci right 2.737839e-02	k: 19441	n:720000
ARHGAP20   720000 perm   383 sec   (1881 perm/sec)   p_kst 2.700139e-02   p_cons 1.375000e-03   p_joint 8.958333e-04

Joint ci ratio: 1.534504e-01	ci left: 8.246106e-04	ci right 9.629611e-04	k: 651	n:730000
Cons ci ratio: 1.236289e-01	ci left: 1.290300e-03	ci right 1.461641e-03	k: 1003	n:730000
KS ci ratio: 2.755299e-02	ci left: 2.660761e-02	ci right 2.735232e-02	k: 19694	n:730000
ARHGAP20   730000 perm   391 sec   (1868 perm/sec)   p_kst 2.697808e-02   p_cons 1.373973e-03   p_joint 8.917808e-04

Joint ci ratio: 1.577473e-01	ci left: 7.680093e-04	ci right 9.008133e-04	k: 616	n:740000
Cons ci ratio: 1.230181e-01	ci left: 1.285960e-03	ci right 1.455820e-03	k: 1013	n:740000
KS ci ratio: 2.738015e-02	ci left: 2.658356e-02	ci right 2.732285e-02	k: 19944	n:740000
ARHGAP20   740000 perm   399 sec   (1855 perm/sec)   p_kst 2.695135e-02   p_cons 1.368919e-03   p_joint 8.324324e-04

Joint ci ratio: 1.587818e-01	ci left: 7.475243e-04	ci right 8.777144e-04	k: 608	n:750000
Cons ci ratio: 1.221181e-01	ci left: 1.288201e-03	ci right 1.457022e-03	k: 1028	n:750000
KS ci ratio: 2.719875e-02	ci left: 2.658268e-02	ci right 2.731698e-02	k: 20211	n:750000
ARHGAP20   750000 perm   407 sec   (1842 perm/sec)   p_kst 2.694800e-02   p_cons 1.370667e-03   p_joint 8.106667e-04

Joint ci ratio: 1.572398e-01	ci left: 7.528538e-04	ci right 8.825787e-04	k: 620	n:760000
Cons ci ratio: 1.215879e-01	ci left: 1.282732e-03	ci right 1.450054e-03	k: 1037	n:760000
KS ci ratio: 2.705010e-02	ci left: 2.652564e-02	ci right 2.725429e-02	k: 20435	n:760000
ARHGAP20   760000 perm   415 sec   (1829 perm/sec)   p_kst 2.688816e-02   p_cons 1.364474e-03   p_joint 8.157895e-04

Joint ci ratio: 1.557419e-01	ci left: 7.580508e-04	ci right 8.873106e-04	k: 632	n:770000
Cons ci ratio: 1.207187e-01	ci left: 1.284963e-03	ci right 1.451292e-03	k: 1052	n:770000
KS ci ratio: 2.685316e-02	ci left: 2.656814e-02	ci right 2.729257e-02	k: 20735	n:770000
ARHGAP20   770000 perm   424 sec   (1817 perm/sec)   p_kst 2.692857e-02   p_cons 1.366234e-03   p_joint 8.207792e-04

Joint ci ratio: 1.571149e-01	ci left: 7.347809e-04	ci right 8.612816e-04	k: 621	n:780000
Cons ci ratio: 1.200368e-01	ci left: 1.283410e-03	ci right 1.448534e-03	k: 1064	n:780000
KS ci ratio: 2.668066e-02	ci left: 2.657009e-02	ci right 2.728984e-02	k: 21004	n:780000
ARHGAP20   780000 perm   432 sec   (1805 perm/sec)   p_kst 2.692821e-02   p_cons 1.364103e-03   p_joint 7.961538e-04

Joint ci ratio: 1.564875e-01	ci left: 7.315606e-04	ci right 8.569566e-04	k: 626	n:790000
Cons ci ratio: 1.195331e-01	ci left: 1.278215e-03	ci right 1.441932e-03	k: 1073	n:790000
KS ci ratio: 2.649929e-02	ci left: 2.659590e-02	ci right 2.731138e-02	k: 21292	n:790000
ARHGAP20   790000 perm   441 sec   (1793 perm/sec)   p_kst 2.695190e-02   p_cons 1.358228e-03   p_joint 7.924051e-04

Joint ci ratio: 1.554986e-01	ci left: 7.320257e-04	ci right 8.566347e-04	k: 634	n:800000
Cons ci ratio: 1.189808e-01	ci left: 1.274365e-03	ci right 1.436780e-03	k: 1083	n:800000
KS ci ratio: 2.634604e-02	ci left: 2.657264e-02	ci right 2.728329e-02	k: 21541	n:800000
ARHGAP20   800000 perm   449 sec   (1780 perm/sec)   p_kst 2.692625e-02   p_cons 1.353750e-03   p_joint 7.925000e-04

Joint ci ratio: 1.544081e-01	ci left: 7.336687e-04	ci right 8.576005e-04	k: 643	n:810000
Cons ci ratio: 1.181659e-01	ci left: 1.276601e-03	ci right 1.438110e-03	k: 1098	n:810000
KS ci ratio: 2.617630e-02	ci left: 2.658799e-02	ci right 2.729441e-02	k: 21821	n:810000
ARHGAP20   810000 perm   458 sec   (1769 perm/sec)   p_kst 2.693951e-02   p_cons 1.355556e-03   p_joint 7.938272e-04

Joint ci ratio: 1.496036e-01	ci left: 7.739946e-04	ci right 9.003062e-04	k: 685	n:820000
Cons ci ratio: 1.172622e-01	ci left: 1.281154e-03	ci right 1.441913e-03	k: 1115	n:820000
KS ci ratio: 2.478874e-02	ci left: 2.922695e-02	ci right 2.996174e-02	k: 24266	n:820000
ARHGAP20   820000 perm   467 sec   (1757 perm/sec)   p_kst 2.959268e-02   p_cons 1.359756e-03   p_joint 8.353659e-04

Joint ci ratio: 1.174741e-01	ci left: 1.261040e-03	ci right 1.419581e-03	k: 1111	n:830000
Cons ci ratio: 1.163789e-01	ci left: 1.285602e-03	ci right 1.445621e-03	k: 1132	n:830000
KS ci ratio: 2.462912e-02	ci left: 2.925200e-02	ci right 2.998262e-02	k: 24581	n:830000
ARHGAP20   830000 perm   476 sec   (1745 perm/sec)   p_kst 2.961566e-02   p_cons 1.363855e-03   p_joint 1.338554e-03

Joint ci ratio: 1.192603e-01	ci left: 1.207903e-03	ci right 1.362236e-03	k: 1078	n:840000
Cons ci ratio: 1.155153e-01	ci left: 1.289949e-03	ci right 1.449236e-03	k: 1149	n:840000
KS ci ratio: 2.446949e-02	ci left: 2.928356e-02	ci right 3.001016e-02	k: 24902	n:840000
ARHGAP20   840000 perm   484 sec   (1734 perm/sec)   p_kst 2.964524e-02   p_cons 1.367857e-03   p_joint 1.283333e-03

Joint ci ratio: 1.194276e-01	ci left: 1.190268e-03	ci right 1.342575e-03	k: 1075	n:850000
Cons ci ratio: 1.151658e-01	ci left: 1.282770e-03	ci right 1.440659e-03	k: 1156	n:850000
KS ci ratio: 2.430549e-02	ci left: 2.933194e-02	ci right 3.005480e-02	k: 25238	n:850000
ARHGAP20   850000 perm   493 sec   (1723 perm/sec)   p_kst 2.969176e-02   p_cons 1.360000e-03   p_joint 1.264706e-03

Joint ci ratio: 1.187672e-01	ci left: 1.189965e-03	ci right 1.341333e-03	k: 1087	n:860000
Cons ci ratio: 1.145732e-01	ci left: 1.281407e-03	ci right 1.438261e-03	k: 1168	n:860000
KS ci ratio: 2.417446e-02	ci left: 2.930870e-02	ci right 3.002703e-02	k: 25513	n:860000
ARHGAP20   860000 perm   502 sec   (1712 perm/sec)   p_kst 2.966628e-02   p_cons 1.358140e-03   p_joint 1.263953e-03

Joint ci ratio: 1.181176e-01	ci left: 1.189672e-03	ci right 1.340117e-03	k: 1099	n:870000
Cons ci ratio: 1.138451e-01	ci left: 1.283427e-03	ci right 1.439463e-03	k: 1183	n:870000
KS ci ratio: 2.403066e-02	ci left: 2.932142e-02	ci right 3.003574e-02	k: 25819	n:870000
ARHGAP20   870000 perm   511 sec   (1701 perm/sec)   p_kst 2.967701e-02   p_cons 1.359770e-03   p_joint 1.263218e-03

Joint ci ratio: 1.177440e-01	ci left: 1.183873e-03	ci right 1.333078e-03	k: 1106	n:880000
Cons ci ratio: 1.132252e-01	ci left: 1.283196e-03	ci right 1.438298e-03	k: 1196	n:880000
KS ci ratio: 2.389693e-02	ci left: 2.931580e-02	ci right 3.002594e-02	k: 26109	n:880000
ARHGAP20   880000 perm   520 sec   (1691 perm/sec)   p_kst 2.966932e-02   p_cons 1.359091e-03   p_joint 1.256818e-03

Joint ci ratio: 1.173211e-01	ci left: 1.179295e-03	ci right 1.327352e-03	k: 1114	n:890000
Cons ci ratio: 1.125688e-01	ci left: 1.284064e-03	ci right 1.438312e-03	k: 1210	n:890000
KS ci ratio: 2.375428e-02	ci left: 2.933712e-02	ci right 3.004348e-02	k: 26423	n:890000
ARHGAP20   890000 perm   530 sec   (1681 perm/sec)   p_kst 2.968876e-02   p_cons 1.359551e-03   p_joint 1.251685e-03

Joint ci ratio: 1.166431e-01	ci left: 1.180214e-03	ci right 1.327471e-03	k: 1127	n:900000
Cons ci ratio: 1.118780e-01	ci left: 1.285996e-03	ci right 1.439465e-03	k: 1225	n:900000
KS ci ratio: 2.362782e-02	ci left: 2.932483e-02	ci right 3.002709e-02	k: 26707	n:900000
ARHGAP20   900000 perm   539 sec   (1670 perm/sec)   p_kst 2.967444e-02   p_cons 1.361111e-03   p_joint 1.252222e-03

Joint ci ratio: 1.159258e-01	ci left: 1.182181e-03	ci right 1.328715e-03	k: 1141	n:910000
Cons ci ratio: 1.111101e-01	ci left: 1.290024e-03	ci right 1.442848e-03	k: 1242	n:910000
KS ci ratio: 2.349439e-02	ci left: 2.933468e-02	ci right 3.003315e-02	k: 27011	n:910000
ARHGAP20   910000 perm   548 sec   (1659 perm/sec)   p_kst 2.968242e-02   p_cons 1.364835e-03   p_joint 1.253846e-03

Joint ci ratio: 1.158251e-01	ci left: 1.171442e-03	ci right 1.316510e-03	k: 1143	n:920000
Cons ci ratio: 1.104456e-01	ci left: 1.291855e-03	ci right 1.443921e-03	k: 1257	n:920000
KS ci ratio: 2.336672e-02	ci left: 2.933568e-02	ci right 3.003033e-02	k: 27307	n:920000
ARHGAP20   920000 perm   558 sec   (1649 perm/sec)   p_kst 2.968152e-02   p_cons 1.366304e-03   p_joint 1.242391e-03

Joint ci ratio: 1.158259e-01	ci left: 1.158846e-03	ci right 1.302354e-03	k: 1143	n:930000
Cons ci ratio: 1.099660e-01	ci left: 1.289466e-03	ci right 1.440549e-03	k: 1268	n:930000
KS ci ratio: 2.323895e-02	ci left: 2.934201e-02	ci right 3.003296e-02	k: 27608	n:930000
ARHGAP20   930000 perm   567 sec   (1639 perm/sec)   p_kst 2.968602e-02   p_cons 1.363441e-03   p_joint 1.229032e-03

Joint ci ratio: 1.152731e-01	ci left: 1.157881e-03	ci right 1.300540e-03	k: 1154	n:940000
Cons ci ratio: 1.095355e-01	ci left: 1.286094e-03	ci right 1.436154e-03	k: 1278	n:940000
KS ci ratio: 2.311580e-02	ci left: 2.934187e-02	ci right 3.002911e-02	k: 27903	n:940000
ARHGAP20   940000 perm   577 sec   (1629 perm/sec)   p_kst 2.968404e-02   p_cons 1.359574e-03   p_joint 1.227660e-03

Joint ci ratio: 1.214290e-01	ci left: 1.029239e-03	ci right 1.163306e-03	k: 1040	n:950000
Cons ci ratio: 1.090676e-01	ci left: 1.283819e-03	ci right 1.432932e-03	k: 1289	n:950000
KS ci ratio: 2.298704e-02	ci left: 2.936059e-02	ci right 3.004439e-02	k: 28216	n:950000
ARHGAP20   950000 perm   587 sec   (1619 perm/sec)   p_kst 2.970105e-02   p_cons 1.356842e-03   p_joint 1.094737e-03

Joint ci ratio: 1.217815e-01	ci left: 1.012457e-03	ci right 1.144749e-03	k: 1034	n:960000
Cons ci ratio: 1.085640e-01	ci left: 1.282606e-03	ci right 1.430846e-03	k: 1301	n:960000
KS ci ratio: 2.287569e-02	ci left: 2.934060e-02	ci right 3.002058e-02	k: 28492	n:960000
ARHGAP20   960000 perm   597 sec   (1609 perm/sec)   p_kst 2.967917e-02   p_cons 1.355208e-03   p_joint 1.077083e-03

Joint ci ratio: 1.208507e-01	ci left: 1.018014e-03	ci right 1.149943e-03	k: 1050	n:970000
Cons ci ratio: 1.075764e-01	ci left: 1.293457e-03	ci right 1.441505e-03	k: 1325	n:970000
KS ci ratio: 2.275494e-02	ci left: 2.934871e-02	ci right 3.002524e-02	k: 28795	n:970000
ARHGAP20   970000 perm   606 sec   (1600 perm/sec)   p_kst 2.968557e-02   p_cons 1.365979e-03   p_joint 1.082474e-03

Joint ci ratio: 1.203366e-01	ci left: 1.016533e-03	ci right 1.147669e-03	k: 1059	n:980000
Cons ci ratio: 1.070930e-01	ci left: 1.292174e-03	ci right 1.439370e-03	k: 1337	n:980000
KS ci ratio: 2.264572e-02	ci left: 2.933231e-02	ci right 3.000517e-02	k: 29074	n:980000
ARHGAP20   980000 perm   616 sec   (1590 perm/sec)   p_kst 2.966735e-02   p_cons 1.364286e-03   p_joint 1.080612e-03

Joint ci ratio: 1.195496e-01	ci left: 1.019982e-03	ci right 1.150642e-03	k: 1073	n:990000
Cons ci ratio: 1.064583e-01	ci left: 1.294852e-03	ci right 1.441424e-03	k: 1353	n:990000
KS ci ratio: 2.253409e-02	ci left: 2.932629e-02	ci right 2.999566e-02	k: 29363	n:990000
ARHGAP20   990000 perm   626 sec   (1581 perm/sec)   p_kst 2.965960e-02   p_cons 1.366667e-03   p_joint 1.083838e-03

Joint ci ratio: 1.191621e-01	ci left: 1.016573e-03	ci right 1.146345e-03	k: 1080	n:1000000
Cons ci ratio: 1.058733e-01	ci left: 1.296505e-03	ci right 1.442407e-03	k: 1368	n:1000000
KS ci ratio: 2.242099e-02	ci left: 2.932836e-02	ci right 2.999437e-02	k: 29660	n:1000000
ARHGAP20   1000000 perm   636 sec   (1571 perm/sec)   p_kst 2.966000e-02   p_cons 1.368000e-03   p_joint 1.080000e-03

Joint ci ratio: 1.230407e-01	ci left: 9.421781e-04	ci right 1.066653e-03	k: 1013	n:1010000
Cons ci ratio: 1.052599e-01	ci left: 1.299092e-03	ci right 1.444386e-03	k: 1384	n:1010000
KS ci ratio: 2.231302e-02	ci left: 2.932153e-02	ci right 2.998414e-02	k: 29948	n:1010000
ARHGAP20   1010000 perm   647 sec   (1562 perm/sec)   p_kst 2.965149e-02   p_cons 1.370297e-03   p_joint 1.002970e-03

Joint ci ratio: 1.239004e-01	ci left: 9.196388e-04	ci right 1.042047e-03	k: 999	n:1020000
Cons ci ratio: 1.044705e-01	ci left: 1.306404e-03	ci right 1.451353e-03	k: 1405	n:1020000
KS ci ratio: 2.220017e-02	ci left: 2.933142e-02	ci right 2.999086e-02	k: 30253	n:1020000
ARHGAP20   1020000 perm   657 sec   (1553 perm/sec)   p_kst 2.965980e-02   p_cons 1.377451e-03   p_joint 9.794118e-04

Joint ci ratio: 1.232245e-01	ci left: 9.210599e-04	ci right 1.042939e-03	k: 1010	n:1030000
Cons ci ratio: 1.036986e-01	ci left: 1.313579e-03	ci right 1.458181e-03	k: 1426	n:1030000
KS ci ratio: 2.209870e-02	ci left: 2.931602e-02	ci right 2.997206e-02	k: 30532	n:1030000
ARHGAP20   1030000 perm   667 sec   (1544 perm/sec)   p_kst 2.964272e-02   p_cons 1.384466e-03   p_joint 9.805825e-04

Joint ci ratio: 1.329979e-01	ci left: 7.790998e-04	ci right 8.910181e-04	k: 867	n:1040000
Cons ci ratio: 1.033013e-01	ci left: 1.311251e-03	ci right 1.455010e-03	k: 1437	n:1040000
KS ci ratio: 2.282815e-02	ci left: 2.725634e-02	ci right 2.788668e-02	k: 28673	n:1040000
ARHGAP20   1040000 perm   677 sec   (1535 perm/sec)   p_kst 2.757019e-02   p_cons 1.381731e-03   p_joint 8.336538e-04

Joint ci ratio: 1.322382e-01	ci left: 7.808877e-04	ci right 8.923717e-04	k: 877	n:1050000
Cons ci ratio: 1.030512e-01	ci left: 1.305257e-03	ci right 1.447992e-03	k: 1444	n:1050000
KS ci ratio: 2.271140e-02	ci left: 2.727611e-02	ci right 2.790364e-02	k: 28968	n:1050000
ARHGAP20   1050000 perm   688 sec   (1526 perm/sec)   p_kst 2.758857e-02   p_cons 1.375238e-03   p_joint 8.352381e-04

Joint ci ratio: 1.319383e-01	ci left: 7.771696e-04	ci right 8.878515e-04	k: 881	n:1060000
Cons ci ratio: 1.022751e-01	ci left: 1.313166e-03	ci right 1.455619e-03	k: 1466	n:1060000
KS ci ratio: 2.260000e-02	ci left: 2.728707e-02	ci right 2.791174e-02	k: 29254	n:1060000
ARHGAP20   1060000 perm   698 sec   (1518 perm/sec)   p_kst 2.759811e-02   p_cons 1.383019e-03   p_joint 8.311321e-04

Joint ci ratio: 1.310496e-01	ci left: 7.807525e-04	ci right 8.911373e-04	k: 893	n:1070000
Cons ci ratio: 1.017218e-01	ci left: 1.315465e-03	ci right 1.457349e-03	k: 1482	n:1070000
KS ci ratio: 2.249689e-02	ci left: 2.728204e-02	ci right 2.790370e-02	k: 29523	n:1070000
ARHGAP20   1070000 perm   709 sec   (1509 perm/sec)   p_kst 2.759159e-02   p_cons 1.385047e-03   p_joint 8.345794e-04

Joint ci ratio: 1.303226e-01	ci left: 7.824799e-04	ci right 8.924478e-04	k: 903	n:1080000
Cons ci ratio: 1.012789e-01	ci left: 1.315016e-03	ci right 1.456198e-03	k: 1495	n:1080000
KS ci ratio: 2.239556e-02	ci left: 2.727618e-02	ci right 2.789487e-02	k: 29791	n:1080000
ARHGAP20   1080000 perm   720 sec   (1501 perm/sec)   p_kst 2.758426e-02   p_cons 1.384259e-03   p_joint 8.361111e-04

Joint ci ratio: 1.073820e-01	ci left: 1.155517e-03	ci right 1.287523e-03	k: 1330	n:1090000
Cons ci ratio: 1.009423e-01	ci left: 1.311894e-03	ci right 1.452245e-03	k: 1505	n:1090000
KS ci ratio: 2.228872e-02	ci left: 2.728686e-02	ci right 2.790281e-02	k: 30077	n:1090000
ARHGAP20   1090000 perm   730 sec   (1492 perm/sec)   p_kst 2.759358e-02   p_cons 1.380734e-03   p_joint 1.220183e-03

Joint ci ratio: 1.068216e-01	ci left: 1.157399e-03	ci right 1.288886e-03	k: 1344	n:1100000
Cons ci ratio: 1.005426e-01	ci left: 1.310602e-03	ci right 1.450226e-03	k: 1517	n:1100000
KS ci ratio: 2.219881e-02	ci left: 2.726028e-02	ci right 2.787312e-02	k: 30322	n:1100000
ARHGAP20   1100000 perm   741 sec   (1484 perm/sec)   p_kst 2.756545e-02   p_cons 1.379091e-03   p_joint 1.221818e-03

Joint ci ratio: 1.082415e-01	ci left: 1.116287e-03	ci right 1.244897e-03	k: 1309	n:1110000
Cons ci ratio: 1.001149e-01	ci left: 1.310213e-03	ci right 1.449167e-03	k: 1530	n:1110000
KS ci ratio: 2.209364e-02	ci left: 2.727362e-02	ci right 2.788381e-02	k: 30611	n:1110000
ARHGAP20   1110000 perm   752 sec   (1476 perm/sec)   p_kst 2.757748e-02   p_cons 1.378378e-03   p_joint 1.179279e-03

Joint ci ratio: 1.237203e-01	ci left: 8.401217e-04	ci right 9.517711e-04	k: 1002	n:1120000
Cons ci ratio: 1.001810e-01	ci left: 1.296773e-03	ci right 1.434398e-03	k: 1528	n:1120000
KS ci ratio: 2.198922e-02	ci left: 2.728849e-02	ci right 2.789609e-02	k: 30902	n:1120000
ARHGAP20   1120000 perm   763 sec   (1468 perm/sec)   p_kst 2.759107e-02   p_cons 1.364286e-03   p_joint 8.946429e-04

Joint ci ratio: 1.251654e-01	ci left: 8.129659e-04	ci right 9.223619e-04	k: 979	n:1130000
Cons ci ratio: 9.975787e-02	ci left: 1.296514e-03	ci right 1.433496e-03	k: 1541	n:1130000
KS ci ratio: 2.188735e-02	ci left: 2.730047e-02	ci right 2.790549e-02	k: 31190	n:1130000
ARHGAP20   1130000 perm   774 sec   (1460 perm/sec)   p_kst 2.760177e-02   p_cons 1.363717e-03   p_joint 8.663717e-04

Joint ci ratio: 1.299663e-01	ci left: 7.455390e-04	ci right 8.500067e-04	k: 908	n:1140000
Cons ci ratio: 9.940406e-02	ci left: 1.294550e-03	ci right 1.430811e-03	k: 1552	n:1140000
KS ci ratio: 2.178616e-02	ci left: 2.731400e-02	ci right 2.791648e-02	k: 31480	n:1140000
ARHGAP20   1140000 perm   785 sec   (1452 perm/sec)   p_kst 2.761404e-02   p_cons 1.361404e-03   p_joint 7.964912e-04

Joint ci ratio: 1.293981e-01	ci left: 7.457869e-04	ci right 8.497974e-04	k: 916	n:1150000
Cons ci ratio: 9.905399e-02	ci left: 1.292620e-03	ci right 1.428172e-03	k: 1563	n:1150000
KS ci ratio: 2.169058e-02	ci left: 2.731691e-02	ci right 2.791678e-02	k: 31758	n:1150000
ARHGAP20   1150000 perm   797 sec   (1444 perm/sec)   p_kst 2.761565e-02   p_cons 1.359130e-03   p_joint 7.965217e-04

Joint ci ratio: 1.290470e-01	ci left: 7.435286e-04	ci right 8.469212e-04	k: 921	n:1160000
Cons ci ratio: 9.873899e-02	ci left: 1.289885e-03	ci right 1.424694e-03	k: 1573	n:1160000
KS ci ratio: 2.160666e-02	ci left: 2.729405e-02	ci right 2.789107e-02	k: 32006	n:1160000
ARHGAP20   1160000 perm   808 sec   (1436 perm/sec)   p_kst 2.759138e-02   p_cons 1.356034e-03   p_joint 7.939655e-04

Joint ci ratio: 1.085355e-01	ci left: 1.053219e-03	ci right 1.174913e-03	k: 1302	n:1170000
Cons ci ratio: 9.833377e-02	ci left: 1.289697e-03	ci right 1.423902e-03	k: 1586	n:1170000
KS ci ratio: 2.151684e-02	ci left: 2.728859e-02	ci right 2.788298e-02	k: 32274	n:1170000
ARHGAP20   1170000 perm   819 sec   (1428 perm/sec)   p_kst 2.758462e-02   p_cons 1.355556e-03   p_joint 1.112821e-03

Joint ci ratio: 1.088711e-01	ci left: 1.037698e-03	ci right 1.157993e-03	k: 1294	n:1180000
Cons ci ratio: 9.799484e-02	ci left: 1.287861e-03	ci right 1.421386e-03	k: 1597	n:1180000
KS ci ratio: 2.142644e-02	ci left: 2.728745e-02	ci right 2.787928e-02	k: 32547	n:1180000
ARHGAP20   1180000 perm   831 sec   (1420 perm/sec)   p_kst 2.758220e-02   p_cons 1.353390e-03   p_joint 1.096610e-03

Joint ci ratio: 1.083286e-01	ci left: 1.039605e-03	ci right 1.159483e-03	k: 1307	n:1190000
Cons ci ratio: 9.753807e-02	ci left: 1.289335e-03	ci right 1.422355e-03	k: 1612	n:1190000
KS ci ratio: 2.133750e-02	ci left: 2.728549e-02	ci right 2.787480e-02	k: 32819	n:1190000
ARHGAP20   1190000 perm   842 sec   (1413 perm/sec)   p_kst 2.757899e-02   p_cons 1.354622e-03   p_joint 1.098319e-03

Joint ci ratio: 1.078350e-01	ci left: 1.040672e-03	ci right 1.160091e-03	k: 1319	n:1200000
Cons ci ratio: 9.711750e-02	ci left: 1.289973e-03	ci right 1.422452e-03	k: 1626	n:1200000
KS ci ratio: 2.124867e-02	ci left: 2.728606e-02	ci right 2.787289e-02	k: 33094	n:1200000
ARHGAP20   1200000 perm   854 sec   (1405 perm/sec)   p_kst 2.757833e-02   p_cons 1.355000e-03   p_joint 1.099167e-03

Joint ci ratio: 1.075099e-01	ci left: 1.038504e-03	ci right 1.157293e-03	k: 1327	n:1210000
Cons ci ratio: 9.670232e-02	ci left: 1.290602e-03	ci right 1.422547e-03	k: 1640	n:1210000
KS ci ratio: 2.116160e-02	ci left: 2.728498e-02	ci right 2.786936e-02	k: 33367	n:1210000
ARHGAP20   1210000 perm   866 sec   (1398 perm/sec)   p_kst 2.757603e-02   p_cons 1.355372e-03   p_joint 1.096694e-03

Joint ci ratio: 1.069874e-01	ci left: 1.040362e-03	ci right 1.158748e-03	k: 1340	n:1220000
Cons ci ratio: 9.640916e-02	ci left: 1.288022e-03	ci right 1.419281e-03	k: 1650	n:1220000
KS ci ratio: 2.106947e-02	ci left: 2.729941e-02	ci right 2.788152e-02	k: 33659	n:1220000
ARHGAP20   1220000 perm   878 sec   (1390 perm/sec)   p_kst 2.758934e-02   p_cons 1.352459e-03   p_joint 1.098361e-03

Joint ci ratio: 1.067888e-01	ci left: 1.035860e-03	ci right 1.153501e-03	k: 1345	n:1230000
Cons ci ratio: 9.608968e-02	ci left: 1.286278e-03	ci right 1.416901e-03	k: 1661	n:1230000
KS ci ratio: 2.098870e-02	ci left: 2.728773e-02	ci right 2.786734e-02	k: 33919	n:1230000
ARHGAP20   1230000 perm   889 sec   (1383 perm/sec)   p_kst 2.757642e-02   p_cons 1.350407e-03   p_joint 1.093496e-03

Joint ci ratio: 1.070683e-01	ci left: 1.022012e-03	ci right 1.138403e-03	k: 1338	n:1240000
Cons ci ratio: 9.560186e-02	ci left: 1.289286e-03	ci right 1.419512e-03	k: 1678	n:1240000
KS ci ratio: 2.089723e-02	ci left: 2.730594e-02	ci right 2.788337e-02	k: 34216	n:1240000
ARHGAP20   1240000 perm   901 sec   (1376 perm/sec)   p_kst 2.759355e-02   p_cons 1.353226e-03   p_joint 1.079032e-03

Joint ci ratio: 1.065917e-01	ci left: 1.023179e-03	ci right 1.139152e-03	k: 1350	n:1250000
Cons ci ratio: 9.534683e-02	ci left: 1.286000e-03	ci right 1.415528e-03	k: 1687	n:1250000
KS ci ratio: 2.082215e-02	ci left: 2.728485e-02	ci right 2.785974e-02	k: 34464	n:1250000
ARHGAP20   1250000 perm   913 sec   (1369 perm/sec)   p_kst 2.757120e-02   p_cons 1.349600e-03   p_joint 1.080000e-03

Joint ci ratio: 1.063168e-01	ci left: 1.020466e-03	ci right 1.135815e-03	k: 1357	n:1260000
Cons ci ratio: 9.492593e-02	ci left: 1.287415e-03	ci right 1.416482e-03	k: 1702	n:1260000
KS ci ratio: 2.074050e-02	ci left: 2.728305e-02	ci right 2.785563e-02	k: 34736	n:1260000
ARHGAP20   1260000 perm   925 sec   (1362 perm/sec)   p_kst 2.756825e-02   p_cons 1.350794e-03   p_joint 1.076984e-03

Joint ci ratio: 9.161889e-02	ci left: 1.373411e-03	ci right 1.506045e-03	k: 1827	n:1270000
Cons ci ratio: 9.456570e-02	ci left: 1.287272e-03	ci right 1.415807e-03	k: 1715	n:1270000
KS ci ratio: 2.066071e-02	ci left: 2.727894e-02	ci right 2.784920e-02	k: 35005	n:1270000
ARHGAP20   1270000 perm   937 sec   (1355 perm/sec)   p_kst 2.756299e-02   p_cons 1.350394e-03   p_joint 1.438583e-03

Outputting figure to mutsig2_images.part000000000010/ARHGAP20.8_3636_1270000_0.027563_0.0013504_0.0014386.png
                gene_name: ARHGAP20
               theta_stop: 0.095 
                    nperm: 1270000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.0014 
      ci_cons_bounds_left: 0.0013 
     ci_cons_bounds_right: 0.0014 
                  p_joint: 0.0014 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 26 percent done.
ARHGAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
Cons ci ratio: 1.264552e-02	ci left: 8.999060e-01	ci right 9.114564e-01	k: 9058	n:10000
KS ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
ARHGAP9   10000 perm   2 sec   (5368 perm/sec)   p_kst 3.732000e-01   p_cons 9.058000e-01   p_joint 6.643000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP9.8_2264_10000_0.3732_0.9058_0.6643.png
                gene_name: ARHGAP9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 28 percent done.
ARAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
Cons ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
KS ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
ARAP1   10000 perm   2 sec   (4666 perm/sec)   p_kst 5.459000e-01   p_cons 7.100000e-02   p_joint 1.701000e-01

Joint ci ratio: 5.306632e-02	ci left: 2.086300e-01	ci right 2.200532e-01	k: 4286	n:20000
Cons ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
KS ci ratio: 2.584511e-02	ci left: 5.279577e-01	ci right 5.418321e-01	k: 10698	n:20000
ARAP1   20000 perm   5 sec   (4210 perm/sec)   p_kst 5.349000e-01   p_cons 6.870000e-02   p_joint 2.143000e-01

Joint ci ratio: 3.954071e-02	ci left: 2.418630e-01	ci right 2.516528e-01	k: 7402	n:30000
Cons ci ratio: 8.374221e-02	ci left: 6.520923e-02	ci right 7.094143e-02	k: 2041	n:30000
KS ci ratio: 2.110999e-02	ci left: 5.290693e-01	ci right 5.403907e-01	k: 16042	n:30000
ARAP1   30000 perm   7 sec   (4031 perm/sec)   p_kst 5.347333e-01   p_cons 6.803333e-02   p_joint 2.467333e-01

Outputting figure to mutsig2_images.part000000000010/ARAP1.7_4485_30000_0.53473_0.068033_0.24673.png
                gene_name: ARAP1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
ARHGAP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
Cons ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
KS ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
ARHGAP30   10000 perm   2 sec   (4814 perm/sec)   p_kst 3.156000e-01   p_cons 3.511000e-01   p_joint 3.322000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP30.7_3354_10000_0.3156_0.3511_0.3322.png
                gene_name: ARHGAP30
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
ARHGAP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
Cons ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
KS ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
ARHGAP33   10000 perm   2 sec   (4913 perm/sec)   p_kst 2.097000e-01   p_cons 1.639000e-01   p_joint 1.675000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP33.7_3948_10000_0.2097_0.1639_0.1675.png
                gene_name: ARHGAP33
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 32 percent done.
ARHGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
KS ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
ARHGAP5   10000 perm   2 sec   (4640 perm/sec)   p_kst 4.866000e-01   p_cons 3.859000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP5.7_4533_10000_0.4866_0.3859_0.6024.png
                gene_name: ARHGAP5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 34 percent done.
ARHGEF10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
ARHGEF10L   10000 perm   2 sec   (4495 perm/sec)   p_kst 3.408000e-01   p_cons 3.745000e-01   p_joint 3.781000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF10L.7_3952_10000_0.3408_0.3745_0.3781.png
                gene_name: ARHGEF10L
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 35 percent done.
AQP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
Cons ci ratio: 2.528895e-02	ci left: 6.970623e-01	ci right 7.150175e-01	k: 7061	n:10000
KS ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
AQP9   10000 perm   2 sec   (5482 perm/sec)   p_kst 7.550000e-02   p_cons 7.061000e-01   p_joint 1.685000e-01

Joint ci ratio: 5.876328e-02	ci left: 1.766247e-01	ci right 1.873680e-01	k: 3639	n:20000
Cons ci ratio: 1.787813e-02	ci left: 6.998325e-01	ci right 7.125075e-01	k: 14124	n:20000
KS ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
AQP9   20000 perm   4 sec   (4899 perm/sec)   p_kst 7.845000e-02   p_cons 7.062000e-01   p_joint 1.819500e-01

Outputting figure to mutsig2_images.part000000000010/AQP9.6_912_20000_0.07845_0.7062_0.18195.png
                gene_name: AQP9
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 37 percent done.
ARFGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
KS ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
ARFGEF2   10000 perm   2 sec   (4662 perm/sec)   p_kst 1.613000e-01   p_cons 2.982000e-01   p_joint 3.571000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF2.6_5514_10000_0.1613_0.2982_0.3571.png
                gene_name: ARFGEF2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
ARHGAP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
Cons ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
ARHGAP15   10000 perm   2 sec   (5267 perm/sec)   p_kst 4.010000e-02   p_cons 6.710000e-01   p_joint 8.430000e-02

Joint ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
Cons ci ratio: 1.926582e-02	ci left: 6.677049e-01	ci right 6.807444e-01	k: 13485	n:20000
KS ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
ARHGAP15   20000 perm   4 sec   (4713 perm/sec)   p_kst 4.065000e-02   p_cons 6.742500e-01   p_joint 7.125000e-02

Joint ci ratio: 7.868912e-02	ci left: 7.338582e-02	ci right 7.942985e-02	k: 2291	n:30000
Cons ci ratio: 1.572887e-02	ci left: 6.689636e-01	ci right 6.796026e-01	k: 20229	n:30000
KS ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
ARHGAP15   30000 perm   7 sec   (4501 perm/sec)   p_kst 4.083333e-02   p_cons 6.743000e-01   p_joint 7.636667e-02

Joint ci ratio: 6.904393e-02	ci left: 7.199439e-02	ci right 7.716757e-02	k: 2982	n:40000
Cons ci ratio: 1.367521e-02	ci left: 6.679513e-01	ci right 6.771736e-01	k: 26903	n:40000
KS ci ratio: 9.482145e-02	ci left: 3.902881e-02	ci right 4.293818e-02	k: 1638	n:40000
ARHGAP15   40000 perm   9 sec   (4365 perm/sec)   p_kst 4.095000e-02   p_cons 6.725750e-01   p_joint 7.455000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP15.6_1480_40000_0.04095_0.67258_0.07455.png
                gene_name: ARHGAP15
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 40 percent done.
ARHGAP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
Cons ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
KS ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
ARHGAP17   10000 perm   2 sec   (4903 perm/sec)   p_kst 1.182000e-01   p_cons 2.149000e-01   p_joint 2.096000e-01

Joint ci ratio: 4.754054e-02	ci left: 2.476311e-01	ci right 2.597406e-01	k: 5073	n:20000
Cons ci ratio: 5.350342e-02	ci left: 2.059071e-01	ci right 2.172769e-01	k: 4231	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
ARHGAP17   20000 perm   5 sec   (4417 perm/sec)   p_kst 1.220500e-01   p_cons 2.115500e-01   p_joint 2.536500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP17.6_2726_20000_0.12205_0.21155_0.25365.png
                gene_name: ARHGAP17
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
ARHGAP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
Cons ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
KS ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
ARHGAP27   10000 perm   2 sec   (5197 perm/sec)   p_kst 1.128000e-01   p_cons 9.839000e-01   p_joint 3.243000e-01

Joint ci ratio: 5.677031e-02	ci left: 1.870064e-01	ci right 1.979831e-01	k: 3849	n:20000
Cons ci ratio: 3.494611e-03	ci left: 9.825854e-01	ci right 9.860717e-01	k: 19688	n:20000
KS ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
ARHGAP27   20000 perm   4 sec   (4672 perm/sec)   p_kst 1.088500e-01   p_cons 9.844000e-01   p_joint 1.924500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP27.6_1711_20000_0.10885_0.9844_0.19245.png
                gene_name: ARHGAP27
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 43 percent done.
ARHGAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
KS ci ratio: 1.914655e-02	ci left: 7.995320e-01	ci right 8.150886e-01	k: 8074	n:10000
ARHGAP29   10000 perm   2 sec   (4943 perm/sec)   p_kst 8.074000e-01   p_cons 7.598000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP29.6_3874_10000_0.8074_0.7598_1.png
                gene_name: ARHGAP29
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ARHGAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
ARHGAP6   10000 perm   2 sec   (5132 perm/sec)   p_kst 2.290000e-01   p_cons 4.920000e-02   p_joint 1.384000e-01

Joint ci ratio: 5.811047e-02	ci left: 1.799362e-01	ci right 1.907554e-01	k: 3706	n:20000
Cons ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
KS ci ratio: 5.156127e-02	ci left: 2.183859e-01	ci right 2.299944e-01	k: 4483	n:20000
ARHGAP6   20000 perm   4 sec   (4623 perm/sec)   p_kst 2.241500e-01   p_cons 5.145000e-02   p_joint 1.853000e-01

Joint ci ratio: 6.143288e-02	ci left: 1.158168e-01	ci right 1.231904e-01	k: 3584	n:30000
Cons ci ratio: 9.765997e-02	ci left: 4.847233e-02	ci right 5.348175e-02	k: 1528	n:30000
KS ci ratio: 4.209168e-02	ci left: 2.195240e-01	ci right 2.289962e-01	k: 6727	n:30000
ARHGAP6   30000 perm   7 sec   (4415 perm/sec)   p_kst 2.242333e-01   p_cons 5.093333e-02   p_joint 1.194667e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP6.6_3099_30000_0.22423_0.050933_0.11947.png
                gene_name: ARHGAP6
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 46 percent done.
ARHGEF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
ARHGEF15   10000 perm   2 sec   (5104 perm/sec)   p_kst 8.978000e-01   p_cons 3.878000e-01   p_joint 6.876000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF15.6_2586_10000_0.8978_0.3878_0.6876.png
                gene_name: ARHGEF15
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 48 percent done.
ARHGEF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
Cons ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
KS ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
ARHGEF17   10000 perm   2 sec   (4145 perm/sec)   p_kst 4.231000e-01   p_cons 5.816000e-01   p_joint 6.609000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF17.6_6276_10000_0.4231_0.5816_0.6609.png
                gene_name: ARHGEF17
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 49 percent done.
ARHGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
ARHGEF2   10000 perm   2 sec   (4718 perm/sec)   p_kst 3.689000e-01   p_cons 5.560000e-01   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF2.6_3049_10000_0.3689_0.556_0.488.png
                gene_name: ARHGEF2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 51 percent done.
ARHGEF37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
Cons ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
KS ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
ARHGEF37   10000 perm   2 sec   (5297 perm/sec)   p_kst 3.574000e-01   p_cons 7.249000e-01   p_joint 6.826000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF37.6_2076_10000_0.3574_0.7249_0.6826.png
                gene_name: ARHGEF37
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 52 percent done.
ARHGEF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
Cons ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
ARHGEF7   10000 perm   2 sec   (4839 perm/sec)   p_kst 1.251000e-01   p_cons 5.148000e-01   p_joint 2.537000e-01

Joint ci ratio: 5.835213e-02	ci left: 1.787005e-01	ci right 1.894915e-01	k: 3681	n:20000
Cons ci ratio: 2.666396e-02	ci left: 5.123983e-01	ci right 5.262961e-01	k: 10387	n:20000
KS ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
ARHGEF7   20000 perm   5 sec   (4397 perm/sec)   p_kst 1.241000e-01   p_cons 5.193500e-01   p_joint 1.840500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF7.6_2782_20000_0.1241_0.51935_0.18405.png
                gene_name: ARHGEF7
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 54 percent done.
AR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
Cons ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
KS ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
AR   10000 perm   2 sec   (5203 perm/sec)   p_kst 6.417000e-01   p_cons 7.575000e-01   p_joint 8.735000e-01

Outputting figure to mutsig2_images.part000000000010/AR.5_2819_10000_0.6417_0.7575_0.8735.png
                gene_name: AR
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 55 percent done.
ARGFX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
ARGFX   10000 perm   2 sec   (5362 perm/sec)   p_kst 3.864000e-01   p_cons 2.516000e-01   p_joint 5.131000e-01

Outputting figure to mutsig2_images.part000000000010/ARGFX.5_964_10000_0.3864_0.2516_0.5131.png
                gene_name: ARGFX
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 57 percent done.
ARHGAP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
Cons ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
KS ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
ARHGAP10   10000 perm   2 sec   (5278 perm/sec)   p_kst 8.697000e-01   p_cons 6.340000e-02   p_joint 2.858000e-01

Joint ci ratio: 5.592626e-02	ci left: 1.916556e-01	ci right 2.027326e-01	k: 3943	n:20000
Cons ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
KS ci ratio: 1.086676e-02	ci left: 8.620125e-01	ci right 8.714806e-01	k: 17336	n:20000
ARHGAP10   20000 perm   4 sec   (4727 perm/sec)   p_kst 8.668000e-01   p_cons 4.995000e-02   p_joint 1.971500e-01

Joint ci ratio: 5.087533e-02	ci left: 1.609806e-01	ci right 1.694176e-01	k: 4955	n:30000
Cons ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
KS ci ratio: 9.041984e-03	ci left: 8.584164e-01	ci right 8.662466e-01	k: 25871	n:30000
ARHGAP10   30000 perm   7 sec   (4504 perm/sec)   p_kst 8.623667e-01   p_cons 5.063333e-02   p_joint 1.651667e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP10.5_2453_30000_0.86237_0.050633_0.16517.png
                gene_name: ARHGAP10
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 58 percent done.
ARHGAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
ARHGAP12   10000 perm   2 sec   (5071 perm/sec)   p_kst 3.363000e-01   p_cons 7.828000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP12.5_2613_10000_0.3363_0.7828_0.5652.png
                gene_name: ARHGAP12
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 60 percent done.
ARHGAP24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
ARHGAP24   10000 perm   2 sec   (5392 perm/sec)   p_kst 5.400000e-01   p_cons 1.200000e-03   p_joint 1.450000e-02

Joint ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
Cons ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
KS ci ratio: 2.532247e-02	ci left: 5.381175e-01	ci right 5.519694e-01	k: 10901	n:20000
ARHGAP24   20000 perm   4 sec   (4837 perm/sec)   p_kst 5.450500e-01   p_cons 2.800000e-03   p_joint 2.015000e-02

Joint ci ratio: 1.874555e-01	ci left: 1.301884e-02	ci right 1.574306e-02	k: 430	n:30000
Cons ci ratio: 4.322924e-01	ci left: 2.144750e-03	ci right 3.354753e-03	k: 81	n:30000
KS ci ratio: 2.065047e-02	ci left: 5.400115e-01	ci right 5.513130e-01	k: 16370	n:30000
ARHGAP24   30000 perm   7 sec   (4612 perm/sec)   p_kst 5.456667e-01   p_cons 2.700000e-03   p_joint 1.433333e-02

Joint ci ratio: 1.093982e-01	ci left: 2.939614e-02	ci right 3.282238e-02	k: 1243	n:40000
Cons ci ratio: 3.715487e-01	ci left: 2.260691e-03	ci right 3.313558e-03	k: 110	n:40000
KS ci ratio: 1.780812e-02	ci left: 5.428817e-01	ci right 5.526614e-01	k: 21911	n:40000
ARHGAP24   40000 perm   9 sec   (4468 perm/sec)   p_kst 5.477750e-01   p_cons 2.750000e-03   p_joint 3.107500e-02

Joint ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
Cons ci ratio: 3.217416e-01	ci left: 2.484493e-03	ci right 3.454640e-03	k: 147	n:50000
KS ci ratio: 1.594216e-02	ci left: 5.429644e-01	ci right 5.517101e-01	k: 27367	n:50000
ARHGAP24   50000 perm   11 sec   (4370 perm/sec)   p_kst 5.473400e-01   p_cons 2.940000e-03   p_joint 2.264000e-02

Joint ci ratio: 1.224877e-01	ci left: 1.575439e-02	ci right 1.782606e-02	k: 1006	n:60000
Cons ci ratio: 2.967408e-01	ci left: 2.470166e-03	ci right 3.345682e-03	k: 173	n:60000
KS ci ratio: 1.454850e-02	ci left: 5.435068e-01	ci right 5.514886e-01	k: 32850	n:60000
ARHGAP24   60000 perm   14 sec   (4277 perm/sec)   p_kst 5.475000e-01   p_cons 2.883333e-03   p_joint 1.676667e-02

Joint ci ratio: 9.379873e-02	ci left: 2.319985e-02	ci right 2.549695e-02	k: 1703	n:70000
Cons ci ratio: 2.810473e-01	ci left: 2.382294e-03	ci right 3.174103e-03	k: 193	n:70000
KS ci ratio: 1.343093e-02	ci left: 5.452190e-01	ci right 5.526056e-01	k: 38424	n:70000
ARHGAP24   70000 perm   17 sec   (4192 perm/sec)   p_kst 5.489143e-01   p_cons 2.757143e-03   p_joint 2.432857e-02

Joint ci ratio: 8.617584e-02	ci left: 2.412492e-02	ci right 2.630970e-02	k: 2016	n:80000
Cons ci ratio: 2.633216e-01	ci left: 2.399000e-03	ci right 3.137793e-03	k: 220	n:80000
KS ci ratio: 1.253980e-02	ci left: 5.463945e-01	ci right 5.533019e-01	k: 43988	n:80000
ARHGAP24   80000 perm   19 sec   (4119 perm/sec)   p_kst 5.498500e-01   p_cons 2.750000e-03   p_joint 2.520000e-02

Joint ci ratio: 8.289473e-02	ci left: 2.323850e-02	ci right 2.525899e-02	k: 2181	n:90000
Cons ci ratio: 2.432249e-01	ci left: 2.527925e-03	ci right 3.238051e-03	k: 258	n:90000
KS ci ratio: 1.182120e-02	ci left: 5.466537e-01	ci right 5.531653e-01	k: 49492	n:90000
ARHGAP24   90000 perm   22 sec   (4050 perm/sec)   p_kst 5.499111e-01   p_cons 2.866667e-03   p_joint 2.423333e-02

Joint ci ratio: 8.022244e-02	ci left: 2.238366e-02	ci right 2.426413e-02	k: 2331	n:100000
Cons ci ratio: 2.318685e-01	ci left: 2.519664e-03	ci right 3.189688e-03	k: 284	n:100000
KS ci ratio: 1.122277e-02	ci left: 5.464599e-01	ci right 5.526372e-01	k: 54955	n:100000
ARHGAP24   100000 perm   25 sec   (3986 perm/sec)   p_kst 5.495500e-01   p_cons 2.840000e-03   p_joint 2.331000e-02

Joint ci ratio: 7.410154e-02	ci left: 2.388898e-02	ci right 2.573619e-02	k: 2728	n:110000
Cons ci ratio: 2.212550e-01	ci left: 2.530711e-03	ci right 3.168677e-03	k: 312	n:110000
KS ci ratio: 1.069451e-02	ci left: 5.468814e-01	ci right 5.527705e-01	k: 60481	n:110000
ARHGAP24   110000 perm   28 sec   (3924 perm/sec)   p_kst 5.498273e-01   p_cons 2.836364e-03   p_joint 2.480000e-02

Joint ci ratio: 7.422183e-02	ci left: 2.187284e-02	ci right 2.356700e-02	k: 2725	n:120000
Cons ci ratio: 2.122896e-01	ci left: 2.532606e-03	ci right 3.141814e-03	k: 339	n:120000
KS ci ratio: 1.021758e-02	ci left: 5.480554e-01	ci right 5.536922e-01	k: 66105	n:120000
ARHGAP24   120000 perm   31 sec   (3851 perm/sec)   p_kst 5.508750e-01   p_cons 2.825000e-03   p_joint 2.270833e-02

Joint ci ratio: 7.834813e-02	ci left: 1.815159e-02	ci right 1.963922e-02	k: 2455	n:130000
Cons ci ratio: 2.013289e-01	ci left: 2.614980e-03	ci right 3.207538e-03	k: 377	n:130000
KS ci ratio: 9.822499e-03	ci left: 5.478756e-01	ci right 5.532913e-01	k: 71576	n:130000
ARHGAP24   130000 perm   34 sec   (3795 perm/sec)   p_kst 5.505846e-01   p_cons 2.900000e-03   p_joint 1.888462e-02

Joint ci ratio: 7.702484e-02	ci left: 1.746416e-02	ci right 1.887018e-02	k: 2542	n:140000
Cons ci ratio: 1.949872e-01	ci left: 2.597907e-03	ci right 3.165850e-03	k: 402	n:140000
KS ci ratio: 9.453576e-03	ci left: 5.485829e-01	ci right 5.538007e-01	k: 77167	n:140000
ARHGAP24   140000 perm   37 sec   (3743 perm/sec)   p_kst 5.511929e-01   p_cons 2.871429e-03   p_joint 1.815714e-02

Joint ci ratio: 6.007683e-02	ci left: 2.677019e-02	ci right 2.843480e-02	k: 4139	n:150000
Cons ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
KS ci ratio: 8.655956e-03	ci left: 5.750622e-01	ci right 5.800682e-01	k: 86635	n:150000
ARHGAP24   150000 perm   41 sec   (3693 perm/sec)   p_kst 5.775667e-01   p_cons 2.860000e-03   p_joint 2.759333e-02

Joint ci ratio: 6.475978e-02	ci left: 2.166199e-02	ci right 2.311788e-02	k: 3581	n:160000
Cons ci ratio: 1.833085e-01	ci left: 2.588745e-03	ci right 3.117025e-03	k: 455	n:160000
KS ci ratio: 8.378700e-03	ci left: 5.752815e-01	ci right 5.801281e-01	k: 92433	n:160000
ARHGAP24   160000 perm   44 sec   (3643 perm/sec)   p_kst 5.777062e-01   p_cons 2.843750e-03   p_joint 2.238125e-02

Joint ci ratio: 6.260678e-02	ci left: 2.183499e-02	ci right 2.325195e-02	k: 3831	n:170000
Cons ci ratio: 1.762912e-01	ci left: 2.644327e-03	ci right 3.161092e-03	k: 492	n:170000
KS ci ratio: 8.126191e-03	ci left: 5.754950e-01	ci right 5.801965e-01	k: 98234	n:170000
ARHGAP24   170000 perm   47 sec   (3593 perm/sec)   p_kst 5.778471e-01   p_cons 2.894118e-03   p_joint 2.253529e-02

Joint ci ratio: 6.073126e-02	ci left: 2.193474e-02	ci right 2.331403e-02	k: 4071	n:180000
Cons ci ratio: 1.706697e-01	ci left: 2.672798e-03	ci right 3.176756e-03	k: 525	n:180000
KS ci ratio: 7.897823e-03	ci left: 5.755254e-01	ci right 5.800943e-01	k: 104006	n:180000
ARHGAP24   180000 perm   51 sec   (3544 perm/sec)   p_kst 5.778111e-01   p_cons 2.916667e-03   p_joint 2.261667e-02

Joint ci ratio: 6.078350e-02	ci left: 2.076953e-02	ci right 2.207671e-02	k: 4069	n:190000
Cons ci ratio: 1.655538e-01	ci left: 2.698505e-03	ci right 3.190539e-03	k: 558	n:190000
KS ci ratio: 7.689926e-03	ci left: 5.754121e-01	ci right 5.798592e-01	k: 109751	n:190000
ARHGAP24   190000 perm   54 sec   (3495 perm/sec)   p_kst 5.776368e-01   p_cons 2.936842e-03   p_joint 2.141579e-02

Joint ci ratio: 5.997238e-02	ci left: 2.028737e-02	ci right 2.154657e-02	k: 4182	n:200000
Cons ci ratio: 1.615577e-01	ci left: 2.697849e-03	ci right 3.176738e-03	k: 586	n:200000
KS ci ratio: 7.488026e-03	ci left: 5.759370e-01	ci right 5.802708e-01	k: 115621	n:200000
ARHGAP24   200000 perm   58 sec   (3449 perm/sec)   p_kst 5.781050e-01   p_cons 2.930000e-03   p_joint 2.091000e-02

Joint ci ratio: 5.637007e-02	ci left: 2.187462e-02	ci right 2.314813e-02	k: 4726	n:210000
Cons ci ratio: 1.571980e-01	ci left: 2.720259e-03	ci right 3.188866e-03	k: 619	n:210000
KS ci ratio: 7.305716e-03	ci left: 5.761130e-01	ci right 5.803420e-01	k: 121428	n:210000
ARHGAP24   210000 perm   62 sec   (3402 perm/sec)   p_kst 5.782286e-01   p_cons 2.947619e-03   p_joint 2.250476e-02

Joint ci ratio: 5.455833e-02	ci left: 2.230138e-02	ci right 2.355669e-02	k: 5043	n:220000
Cons ci ratio: 1.538840e-01	ci left: 2.714561e-03	ci right 3.171419e-03	k: 646	n:220000
KS ci ratio: 7.135838e-03	ci left: 5.762923e-01	ci right 5.804238e-01	k: 127239	n:220000
ARHGAP24   220000 perm   66 sec   (3358 perm/sec)   p_kst 5.783591e-01   p_cons 2.936364e-03   p_joint 2.292273e-02

Joint ci ratio: 5.373720e-02	ci left: 2.200503e-02	ci right 2.322443e-02	k: 5200	n:230000
Cons ci ratio: 1.506590e-01	ci left: 2.713637e-03	ci right 3.159905e-03	k: 674	n:230000
KS ci ratio: 6.978901e-03	ci left: 5.763439e-01	ci right 5.803845e-01	k: 133024	n:230000
ARHGAP24   230000 perm   69 sec   (3318 perm/sec)   p_kst 5.783652e-01   p_cons 2.930435e-03   p_joint 2.260870e-02

Joint ci ratio: 5.290137e-02	ci left: 2.177464e-02	ci right 2.296193e-02	k: 5367	n:240000
Cons ci ratio: 1.479455e-01	ci left: 2.700843e-03	ci right 3.136300e-03	k: 699	n:240000
KS ci ratio: 6.835386e-03	ci left: 5.761420e-01	ci right 5.800978e-01	k: 138749	n:240000
ARHGAP24   240000 perm   73 sec   (3277 perm/sec)   p_kst 5.781208e-01   p_cons 2.912500e-03   p_joint 2.236250e-02

Joint ci ratio: 5.153947e-02	ci left: 2.203279e-02	ci right 2.320231e-02	k: 5653	n:250000
Cons ci ratio: 1.458790e-01	ci left: 2.669865e-03	ci right 3.093790e-03	k: 719	n:250000
KS ci ratio: 6.699603e-03	ci left: 5.760131e-01	ci right 5.798891e-01	k: 144488	n:250000
ARHGAP24   250000 perm   77 sec   (3237 perm/sec)   p_kst 5.779520e-01   p_cons 2.876000e-03   p_joint 2.261200e-02

Joint ci ratio: 5.284747e-02	ci left: 2.017513e-02	ci right 2.127405e-02	k: 5387	n:260000
Cons ci ratio: 1.429313e-01	ci left: 2.678395e-03	ci right 3.094348e-03	k: 749	n:260000
KS ci ratio: 6.568493e-03	ci left: 5.761258e-01	ci right 5.799263e-01	k: 150287	n:260000
ARHGAP24   260000 perm   81 sec   (3198 perm/sec)   p_kst 5.780269e-01   p_cons 2.880769e-03   p_joint 2.071923e-02

Joint ci ratio: 5.005423e-02	ci left: 2.165486e-02	ci right 2.277024e-02	k: 5996	n:270000
Cons ci ratio: 1.405172e-01	ci left: 2.672076e-03	ci right 3.079452e-03	k: 775	n:270000
KS ci ratio: 6.439019e-03	ci left: 5.766681e-01	ci right 5.803969e-01	k: 156204	n:270000
ARHGAP24   270000 perm   85 sec   (3160 perm/sec)   p_kst 5.785333e-01   p_cons 2.870370e-03   p_joint 2.220741e-02

Joint ci ratio: 4.702349e-02	ci left: 2.364807e-02	ci right 2.479037e-02	k: 6780	n:280000
Cons ci ratio: 1.373652e-01	ci left: 2.700750e-03	ci right 3.102506e-03	k: 811	n:280000
KS ci ratio: 6.327084e-03	ci left: 5.763861e-01	ci right 5.800480e-01	k: 161901	n:280000
ARHGAP24   280000 perm   90 sec   (3123 perm/sec)   p_kst 5.782179e-01   p_cons 2.896429e-03   p_joint 2.421429e-02

Joint ci ratio: 4.835972e-02	ci left: 2.161912e-02	ci right 2.269391e-02	k: 6424	n:290000
Cons ci ratio: 1.345754e-01	ci left: 2.720876e-03	ci right 3.116748e-03	k: 845	n:290000
KS ci ratio: 6.216037e-03	ci left: 5.764967e-01	ci right 5.800948e-01	k: 167706	n:290000
ARHGAP24   290000 perm   94 sec   (3086 perm/sec)   p_kst 5.782966e-01   p_cons 2.913793e-03   p_joint 2.215172e-02

Joint ci ratio: 4.839723e-02	ci left: 2.088182e-02	ci right 2.192078e-02	k: 6419	n:300000
Cons ci ratio: 1.327074e-01	ci left: 2.707504e-03	ci right 3.095531e-03	k: 869	n:300000
KS ci ratio: 6.111599e-03	ci left: 5.765238e-01	ci right 5.800614e-01	k: 173488	n:300000
ARHGAP24   300000 perm   98 sec   (3050 perm/sec)   p_kst 5.782933e-01   p_cons 2.896667e-03   p_joint 2.139667e-02

Joint ci ratio: 4.653558e-02	ci left: 2.185642e-02	ci right 2.290092e-02	k: 6936	n:310000
Cons ci ratio: 1.304040e-01	ci left: 2.716875e-03	ci right 3.098964e-03	k: 900	n:310000
KS ci ratio: 6.013368e-03	ci left: 5.764592e-01	ci right 5.799393e-01	k: 179242	n:310000
ARHGAP24   310000 perm   103 sec   (3015 perm/sec)   p_kst 5.782000e-01   p_cons 2.903226e-03   p_joint 2.237419e-02

Joint ci ratio: 4.418469e-02	ci left: 2.347556e-02	ci right 2.453933e-02	k: 7681	n:320000
Cons ci ratio: 1.278730e-01	ci left: 2.740840e-03	ci right 3.118251e-03	k: 936	n:320000
KS ci ratio: 5.916238e-03	ci left: 5.766868e-01	ci right 5.801118e-01	k: 185088	n:320000
ARHGAP24   320000 perm   107 sec   (2981 perm/sec)   p_kst 5.784000e-01   p_cons 2.925000e-03   p_joint 2.400313e-02

Joint ci ratio: 4.404875e-02	ci left: 2.291988e-02	ci right 2.395518e-02	k: 7733	n:330000
Cons ci ratio: 1.259390e-01	ci left: 2.742874e-03	ci right 3.114425e-03	k: 965	n:330000
KS ci ratio: 5.826887e-03	ci left: 5.766311e-01	ci right 5.800039e-01	k: 190845	n:330000
ARHGAP24   330000 perm   112 sec   (2948 perm/sec)   p_kst 5.783182e-01   p_cons 2.924242e-03   p_joint 2.343333e-02

Joint ci ratio: 4.315925e-02	ci left: 2.317674e-02	ci right 2.420199e-02	k: 8053	n:340000
Cons ci ratio: 1.241528e-01	ci left: 2.741978e-03	ci right 3.107752e-03	k: 993	n:340000
KS ci ratio: 5.741915e-03	ci left: 5.765408e-01	ci right 5.798637e-01	k: 196589	n:340000
ARHGAP24   340000 perm   117 sec   (2915 perm/sec)   p_kst 5.782029e-01   p_cons 2.920588e-03   p_joint 2.368529e-02

Joint ci ratio: 4.264075e-02	ci left: 2.307417e-02	ci right 2.408231e-02	k: 8251	n:350000
Cons ci ratio: 1.229848e-01	ci left: 2.716241e-03	ci right 3.074925e-03	k: 1012	n:350000
KS ci ratio: 5.658665e-03	ci left: 5.766190e-01	ci right 5.798940e-01	k: 202390	n:350000
ARHGAP24   350000 perm   121 sec   (2884 perm/sec)   p_kst 5.782571e-01   p_cons 2.891429e-03   p_joint 2.357429e-02

Joint ci ratio: 4.230741e-02	ci left: 2.279867e-02	ci right 2.378680e-02	k: 8384	n:360000
Cons ci ratio: 1.212613e-01	ci left: 2.718885e-03	ci right 3.072526e-03	k: 1041	n:360000
KS ci ratio: 5.577599e-03	ci left: 5.768099e-01	ci right 5.800388e-01	k: 208233	n:360000
ARHGAP24   360000 perm   126 sec   (2853 perm/sec)   p_kst 5.784250e-01   p_cons 2.891667e-03   p_joint 2.328889e-02

Joint ci ratio: 4.132587e-02	ci left: 2.324971e-02	ci right 2.423345e-02	k: 8783	n:370000
Cons ci ratio: 1.194406e-01	ci left: 2.729285e-03	ci right 3.078572e-03	k: 1073	n:370000
KS ci ratio: 5.499401e-03	ci left: 5.770367e-01	ci right 5.802215e-01	k: 214093	n:370000
ARHGAP24   370000 perm   131 sec   (2819 perm/sec)   p_kst 5.786297e-01   p_cons 2.900000e-03   p_joint 2.373784e-02

Joint ci ratio: 4.149896e-02	ci left: 2.246580e-02	ci right 2.342045e-02	k: 8717	n:380000
Cons ci ratio: 1.179136e-01	ci left: 2.728958e-03	ci right 3.073428e-03	k: 1101	n:380000
KS ci ratio: 5.427651e-03	ci left: 5.769597e-01	ci right 5.801023e-01	k: 219842	n:380000
ARHGAP24   380000 perm   136 sec   (2790 perm/sec)   p_kst 5.785316e-01   p_cons 2.897368e-03   p_joint 2.293947e-02

Joint ci ratio: 4.095275e-02	ci left: 2.248357e-02	ci right 2.342610e-02	k: 8951	n:390000
Cons ci ratio: 1.164438e-01	ci left: 2.728676e-03	ci right 3.068520e-03	k: 1129	n:390000
KS ci ratio: 5.357877e-03	ci left: 5.769561e-01	ci right 5.800581e-01	k: 225618	n:390000
ARHGAP24   390000 perm   141 sec   (2758 perm/sec)   p_kst 5.785077e-01   p_cons 2.894872e-03   p_joint 2.295128e-02

Joint ci ratio: 3.973356e-02	ci left: 2.328280e-02	ci right 2.422912e-02	k: 9501	n:400000
Cons ci ratio: 1.145818e-01	ci left: 2.750288e-03	ci right 3.086977e-03	k: 1166	n:400000
KS ci ratio: 5.290075e-03	ci left: 5.770129e-01	ci right 5.800759e-01	k: 231418	n:400000
ARHGAP24   400000 perm   146 sec   (2731 perm/sec)   p_kst 5.785450e-01   p_cons 2.915000e-03   p_joint 2.375250e-02

Joint ci ratio: 3.999817e-02	ci left: 2.243221e-02	ci right 2.335016e-02	k: 9384	n:410000
Cons ci ratio: 1.132316e-01	ci left: 2.749555e-03	ci right 3.081922e-03	k: 1194	n:410000
KS ci ratio: 5.226169e-03	ci left: 5.769379e-01	ci right 5.799634e-01	k: 237165	n:410000
ARHGAP24   410000 perm   152 sec   (2704 perm/sec)   p_kst 5.784512e-01   p_cons 2.912195e-03   p_joint 2.288780e-02

Joint ci ratio: 3.970743e-02	ci left: 2.222807e-02	ci right 2.313091e-02	k: 9524	n:420000
Cons ci ratio: 1.119281e-01	ci left: 2.748878e-03	ci right 3.077087e-03	k: 1222	n:420000
KS ci ratio: 5.161978e-03	ci left: 5.771073e-01	ci right 5.800964e-01	k: 243013	n:420000
ARHGAP24   420000 perm   157 sec   (2677 perm/sec)   p_kst 5.786024e-01   p_cons 2.909524e-03   p_joint 2.267619e-02

Joint ci ratio: 3.822796e-02	ci left: 2.341327e-02	ci right 2.432804e-02	k: 10263	n:430000
Cons ci ratio: 1.110252e-01	ci left: 2.730164e-03	ci right 3.053336e-03	k: 1242	n:430000
KS ci ratio: 5.102089e-03	ci left: 5.770782e-01	ci right 5.800323e-01	k: 248779	n:430000
ARHGAP24   430000 perm   162 sec   (2649 perm/sec)   p_kst 5.785558e-01   p_cons 2.888372e-03   p_joint 2.386744e-02

Joint ci ratio: 3.834198e-02	ci left: 2.275945e-02	ci right 2.365139e-02	k: 10209	n:440000
Cons ci ratio: 1.092367e-01	ci left: 2.758732e-03	ci right 3.079687e-03	k: 1283	n:440000
KS ci ratio: 5.043932e-03	ci left: 5.770802e-01	ci right 5.800006e-01	k: 254558	n:440000
ARHGAP24   440000 perm   168 sec   (2623 perm/sec)   p_kst 5.785409e-01   p_cons 2.915909e-03   p_joint 2.320227e-02

Joint ci ratio: 3.882952e-02	ci left: 2.171647e-02	ci right 2.257859e-02	k: 9965	n:450000
Cons ci ratio: 1.080649e-01	ci left: 2.757958e-03	ci right 3.075162e-03	k: 1311	n:450000
KS ci ratio: 4.987901e-03	ci left: 5.770645e-01	ci right 5.799522e-01	k: 260329	n:450000
ARHGAP24   450000 perm   175 sec   (2577 perm/sec)   p_kst 5.785089e-01   p_cons 2.913333e-03   p_joint 2.214444e-02

Joint ci ratio: 3.666907e-02	ci left: 2.379662e-02	ci right 2.468765e-02	k: 11150	n:460000
Cons ci ratio: 1.069701e-01	ci left: 2.755120e-03	ci right 3.068585e-03	k: 1338	n:460000
KS ci ratio: 4.934687e-03	ci left: 5.769518e-01	ci right 5.798081e-01	k: 266055	n:460000
ARHGAP24   460000 perm   181 sec   (2545 perm/sec)   p_kst 5.783804e-01   p_cons 2.908696e-03   p_joint 2.423913e-02

Joint ci ratio: 3.496020e-02	ci left: 2.559754e-02	ci right 2.651045e-02	k: 12244	n:470000
Cons ci ratio: 1.057914e-01	ci left: 2.758632e-03	ci right 3.068823e-03	k: 1368	n:470000
KS ci ratio: 4.880669e-03	ci left: 5.770910e-01	ci right 5.799166e-01	k: 271897	n:470000
ARHGAP24   470000 perm   186 sec   (2520 perm/sec)   p_kst 5.785043e-01   p_cons 2.910638e-03   p_joint 2.605106e-02

Joint ci ratio: 3.506408e-02	ci left: 2.493194e-02	ci right 2.582380e-02	k: 12180	n:480000
Cons ci ratio: 1.049145e-01	ci left: 2.747814e-03	ci right 3.054069e-03	k: 1391	n:480000
KS ci ratio: 4.830326e-03	ci left: 5.770286e-01	ci right 5.798246e-01	k: 277645	n:480000
ARHGAP24   480000 perm   192 sec   (2497 perm/sec)   p_kst 5.784271e-01   p_cons 2.897917e-03   p_joint 2.537500e-02

Joint ci ratio: 3.483512e-02	ci left: 2.475283e-02	ci right 2.563239e-02	k: 12343	n:490000
Cons ci ratio: 1.038751e-01	ci left: 2.747387e-03	ci right 3.050375e-03	k: 1419	n:490000
KS ci ratio: 4.782769e-03	ci left: 5.768403e-01	ci right 5.796078e-01	k: 283330	n:490000
ARHGAP24   490000 perm   198 sec   (2470 perm/sec)   p_kst 5.782245e-01   p_cons 2.895918e-03   p_joint 2.518980e-02

Joint ci ratio: 3.429681e-02	ci left: 2.502514e-02	ci right 2.590037e-02	k: 12730	n:500000
Cons ci ratio: 1.031880e-01	ci left: 2.729453e-03	ci right 3.028353e-03	k: 1438	n:500000
KS ci ratio: 4.734705e-03	ci left: 5.768537e-01	ci right 5.795934e-01	k: 289112	n:500000
ARHGAP24   500000 perm   204 sec   (2445 perm/sec)   p_kst 5.782240e-01   p_cons 2.876000e-03   p_joint 2.546000e-02

Joint ci ratio: 3.446418e-02	ci left: 2.431269e-02	ci right 2.516723e-02	k: 12616	n:510000
Cons ci ratio: 1.020592e-01	ci left: 2.737070e-03	ci right 3.033328e-03	k: 1470	n:510000
KS ci ratio: 4.689833e-03	ci left: 5.766824e-01	ci right 5.793952e-01	k: 294800	n:510000
ARHGAP24   510000 perm   210 sec   (2423 perm/sec)   p_kst 5.780392e-01   p_cons 2.882353e-03   p_joint 2.473725e-02

Joint ci ratio: 3.492780e-02	ci left: 2.323677e-02	ci right 2.406470e-02	k: 12297	n:520000
Cons ci ratio: 1.011016e-01	ci left: 2.736912e-03	ci right 3.030209e-03	k: 1498	n:520000
KS ci ratio: 4.645461e-03	ci left: 5.765966e-01	ci right 5.792833e-01	k: 300529	n:520000
ARHGAP24   520000 perm   217 sec   (2397 perm/sec)   p_kst 5.779404e-01   p_cons 2.880769e-03   p_joint 2.364808e-02

Joint ci ratio: 3.458895e-02	ci left: 2.325098e-02	ci right 2.407122e-02	k: 12539	n:530000
Cons ci ratio: 1.000719e-01	ci left: 2.742292e-03	ci right 3.032996e-03	k: 1529	n:530000
KS ci ratio: 4.600954e-03	ci left: 5.766596e-01	ci right 5.793207e-01	k: 306335	n:530000
ARHGAP24   530000 perm   223 sec   (2377 perm/sec)   p_kst 5.779906e-01   p_cons 2.884906e-03   p_joint 2.365849e-02

Joint ci ratio: 3.443819e-02	ci left: 2.302782e-02	ci right 2.383657e-02	k: 12652	n:540000
Cons ci ratio: 9.904125e-02	ci left: 2.749293e-03	ci right 3.037563e-03	k: 1561	n:540000
KS ci ratio: 4.558827e-03	ci left: 5.765999e-01	ci right 5.792363e-01	k: 312076	n:540000
ARHGAP24   540000 perm   229 sec   (2357 perm/sec)   p_kst 5.779185e-01   p_cons 2.890741e-03   p_joint 2.342963e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP24.5_2399_540000_0.57792_0.0028907_0.02343.png
                gene_name: ARHGAP24
               theta_stop: 0.099 
                    nperm: 540000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0029 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0030 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 62 percent done.
AQP12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
Cons ci ratio: 5.351485e-02	ci left: 3.397522e-01	ci right 3.585358e-01	k: 3491	n:10000
KS ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
AQP12B   10000 perm   2 sec   (6352 perm/sec)   p_kst 5.300000e-03   p_cons 3.491000e-01   p_joint 4.130000e-02

Joint ci ratio: 1.887942e-01	ci left: 1.910538e-02	ci right 2.313553e-02	k: 421	n:20000
Cons ci ratio: 3.643473e-02	ci left: 3.598667e-01	ci right 3.732722e-01	k: 7331	n:20000
KS ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
AQP12B   20000 perm   4 sec   (5608 perm/sec)   p_kst 5.600000e-03   p_cons 3.665500e-01   p_joint 2.105000e-02

Joint ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
Cons ci ratio: 2.965720e-02	ci left: 3.625391e-01	ci right 3.734864e-01	k: 11040	n:30000
KS ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
AQP12B   30000 perm   6 sec   (5357 perm/sec)   p_kst 5.466667e-03   p_cons 3.680000e-01   p_joint 2.420000e-02

Joint ci ratio: 1.550650e-01	ci left: 1.450452e-02	ci right 1.696651e-02	k: 628	n:40000
Cons ci ratio: 2.567329e-02	ci left: 3.634706e-01	ci right 3.729485e-01	k: 14728	n:40000
KS ci ratio: 2.691479e-01	ci left: 4.565414e-03	ci right 6.007842e-03	k: 210	n:40000
AQP12B   40000 perm   8 sec   (5103 perm/sec)   p_kst 5.250000e-03   p_cons 3.682000e-01   p_joint 1.570000e-02

Joint ci ratio: 1.075526e-01	ci left: 2.448638e-02	ci right 2.728903e-02	k: 1293	n:50000
Cons ci ratio: 2.295622e-02	ci left: 3.641098e-01	ci right 3.725855e-01	k: 18417	n:50000
KS ci ratio: 2.392563e-01	ci left: 4.701240e-03	ci right 5.997209e-03	k: 266	n:50000
AQP12B   50000 perm   10 sec   (4999 perm/sec)   p_kst 5.320000e-03   p_cons 3.683400e-01   p_joint 2.586000e-02

Joint ci ratio: 1.116433e-01	ci left: 1.900818e-02	ci right 2.127190e-02	k: 1207	n:60000
Cons ci ratio: 2.096552e-02	ci left: 3.642723e-01	ci right 3.720071e-01	k: 22088	n:60000
KS ci ratio: 2.209910e-01	ci left: 4.640211e-03	ci right 5.808434e-03	k: 312	n:60000
AQP12B   60000 perm   12 sec   (4888 perm/sec)   p_kst 5.200000e-03   p_cons 3.681333e-01   p_joint 2.011667e-02

Joint ci ratio: 1.215396e-01	ci left: 1.375218e-02	ci right 1.554552e-02	k: 1024	n:70000
Cons ci ratio: 1.937429e-02	ci left: 3.654238e-01	ci right 3.725871e-01	k: 25830	n:70000
KS ci ratio: 2.013445e-01	ci left: 4.843402e-03	ci right 5.941068e-03	k: 376	n:70000
AQP12B   70000 perm   15 sec   (4782 perm/sec)   p_kst 5.371429e-03   p_cons 3.690000e-01   p_joint 1.462857e-02

Joint ci ratio: 1.156820e-01	ci left: 1.333082e-02	ci right 1.497969e-02	k: 1131	n:80000
Cons ci ratio: 1.808711e-02	ci left: 3.665781e-01	ci right 3.732814e-01	k: 29594	n:80000
KS ci ratio: 1.900912e-01	ci left: 4.784804e-03	ci right 5.801580e-03	k: 422	n:80000
AQP12B   80000 perm   17 sec   (4689 perm/sec)   p_kst 5.275000e-03   p_cons 3.699250e-01   p_joint 1.413750e-02

Joint ci ratio: 1.195760e-01	ci left: 1.109394e-02	ci right 1.251556e-02	k: 1061	n:90000
Cons ci ratio: 1.705325e-02	ci left: 3.667557e-01	ci right 3.730749e-01	k: 33292	n:90000
KS ci ratio: 1.797665e-01	ci left: 4.783010e-03	ci right 5.738194e-03	k: 472	n:90000
AQP12B   90000 perm   20 sec   (4603 perm/sec)   p_kst 5.244444e-03   p_cons 3.699111e-01   p_joint 1.178889e-02

Joint ci ratio: 1.039547e-01	ci left: 1.329067e-02	ci right 1.475772e-02	k: 1401	n:100000
Cons ci ratio: 1.617612e-02	ci left: 3.669765e-01	ci right 3.729711e-01	k: 36997	n:100000
KS ci ratio: 1.709600e-01	ci left: 4.782772e-03	ci right 5.686292e-03	k: 522	n:100000
AQP12B   100000 perm   22 sec   (4519 perm/sec)   p_kst 5.220000e-03   p_cons 3.699700e-01   p_joint 1.401000e-02

Joint ci ratio: 1.047431e-01	ci left: 1.191376e-02	ci right 1.323940e-02	k: 1382	n:110000
Cons ci ratio: 1.542718e-02	ci left: 3.670006e-01	ci right 3.727154e-01	k: 40684	n:110000
KS ci ratio: 1.619183e-01	ci left: 4.870738e-03	ci right 5.737477e-03	k: 582	n:110000
AQP12B   110000 perm   25 sec   (4435 perm/sec)   p_kst 5.290909e-03   p_cons 3.698545e-01   p_joint 1.256364e-02

Joint ci ratio: 9.141616e-02	ci left: 1.440129e-02	ci right 1.578895e-02	k: 1810	n:120000
Cons ci ratio: 1.474788e-02	ci left: 3.678331e-01	ci right 3.733065e-01	k: 44468	n:120000
KS ci ratio: 1.579217e-01	ci left: 4.704806e-03	ci right 5.519392e-03	k: 612	n:120000
AQP12B   120000 perm   28 sec   (4358 perm/sec)   p_kst 5.100000e-03   p_cons 3.705667e-01   p_joint 1.508333e-02

Joint ci ratio: 8.828593e-02	ci left: 1.427851e-02	ci right 1.560480e-02	k: 1941	n:130000
Cons ci ratio: 1.416902e-02	ci left: 3.679506e-01	ci right 3.732090e-01	k: 48175	n:130000
KS ci ratio: 1.515067e-01	ci left: 4.734816e-03	ci right 5.518277e-03	k: 665	n:130000
AQP12B   130000 perm   30 sec   (4287 perm/sec)   p_kst 5.115385e-03   p_cons 3.705769e-01   p_joint 1.493077e-02

Joint ci ratio: 8.587805e-02	ci left: 1.403413e-02	ci right 1.530038e-02	k: 2052	n:140000
Cons ci ratio: 1.411688e-02	ci left: 3.526427e-01	ci right 3.576633e-01	k: 49721	n:140000
KS ci ratio: 1.420886e-01	ci left: 5.022813e-03	ci right 5.797888e-03	k: 756	n:140000
AQP12B   140000 perm   33 sec   (4206 perm/sec)   p_kst 5.400000e-03   p_cons 3.551500e-01   p_joint 1.465714e-02

Joint ci ratio: 8.373521e-02	ci left: 1.379665e-02	ci right 1.500889e-02	k: 2159	n:150000
Cons ci ratio: 1.364785e-02	ci left: 3.524049e-01	ci right 3.572541e-01	k: 53224	n:150000
KS ci ratio: 1.366849e-01	ci left: 5.080457e-03	ci right 5.832187e-03	k: 817	n:150000
AQP12B   150000 perm   36 sec   (4113 perm/sec)   p_kst 5.446667e-03   p_cons 3.548267e-01   p_joint 1.439333e-02

Joint ci ratio: 8.363618e-02	ci left: 1.297697e-02	ci right 1.411576e-02	k: 2166	n:160000
Cons ci ratio: 1.321057e-02	ci left: 3.526174e-01	ci right 3.573129e-01	k: 56794	n:160000
KS ci ratio: 1.316285e-01	ci left: 5.149518e-03	ci right 5.881076e-03	k: 881	n:160000
AQP12B   160000 perm   39 sec   (4051 perm/sec)   p_kst 5.506250e-03   p_cons 3.549625e-01   p_joint 1.353750e-02

Joint ci ratio: 7.158095e-02	ci left: 1.671439e-02	ci right 1.796098e-02	k: 2946	n:170000
Cons ci ratio: 1.282185e-02	ci left: 3.524841e-01	ci right 3.570385e-01	k: 60309	n:170000
KS ci ratio: 1.287474e-01	ci left: 5.074223e-03	ci right 5.778099e-03	k: 921	n:170000
AQP12B   170000 perm   43 sec   (3986 perm/sec)   p_kst 5.417647e-03   p_cons 3.547588e-01   p_joint 1.732941e-02

Joint ci ratio: 7.651440e-02	ci left: 1.382199e-02	ci right 1.492706e-02	k: 2586	n:180000
Cons ci ratio: 1.247038e-02	ci left: 3.521898e-01	ci right 3.566148e-01	k: 63792	n:180000
KS ci ratio: 1.257193e-01	ci left: 5.034358e-03	ci right 5.715055e-03	k: 966	n:180000
AQP12B   180000 perm   46 sec   (3928 perm/sec)   p_kst 5.366667e-03   p_cons 3.544000e-01   p_joint 1.436667e-02

Joint ci ratio: 7.487418e-02	ci left: 1.368829e-02	ci right 1.475819e-02	k: 2701	n:190000
Cons ci ratio: 1.213164e-02	ci left: 3.524801e-01	ci right 3.567875e-01	k: 67380	n:190000
KS ci ratio: 1.225306e-01	ci left: 5.029478e-03	ci right 5.691015e-03	k: 1017	n:190000
AQP12B   190000 perm   49 sec   (3871 perm/sec)   p_kst 5.352632e-03   p_cons 3.546316e-01   p_joint 1.421579e-02

Joint ci ratio: 7.019157e-02	ci left: 1.481573e-02	ci right 1.589838e-02	k: 3070	n:200000
Cons ci ratio: 1.182218e-02	ci left: 3.526229e-01	ci right 3.568214e-01	k: 70944	n:200000
KS ci ratio: 1.200252e-01	ci left: 4.986475e-03	ci right 5.627992e-03	k: 1060	n:200000
AQP12B   200000 perm   52 sec   (3817 perm/sec)   p_kst 5.300000e-03   p_cons 3.547200e-01   p_joint 1.535000e-02

Joint ci ratio: 6.745124e-02	ci left: 1.529438e-02	ci right 1.636667e-02	k: 3323	n:210000
Cons ci ratio: 1.154607e-02	ci left: 3.523253e-01	ci right 3.564216e-01	k: 74418	n:210000
KS ci ratio: 1.174536e-01	ci left: 4.966183e-03	ci right 5.590450e-03	k: 1107	n:210000
AQP12B   210000 perm   56 sec   (3760 perm/sec)   p_kst 5.271429e-03   p_cons 3.543714e-01   p_joint 1.582381e-02

Joint ci ratio: 6.593205e-02	ci left: 1.529197e-02	ci right 1.633902e-02	k: 3478	n:220000
Cons ci ratio: 1.127845e-02	ci left: 3.524599e-01	ci right 3.564621e-01	k: 77981	n:220000
KS ci ratio: 1.155952e-01	ci left: 4.899304e-03	ci right 5.504754e-03	k: 1143	n:220000
AQP12B   220000 perm   59 sec   (3708 perm/sec)   p_kst 5.195455e-03   p_cons 3.544591e-01   p_joint 1.580909e-02

Joint ci ratio: 6.726267e-02	ci left: 1.406245e-02	ci right 1.504549e-02	k: 3346	n:230000
Cons ci ratio: 1.103270e-02	ci left: 3.524144e-01	ci right 3.563284e-01	k: 81505	n:230000
KS ci ratio: 1.126762e-01	ci left: 4.939719e-03	ci right 5.533724e-03	k: 1203	n:230000
AQP12B   230000 perm   63 sec   (3658 perm/sec)   p_kst 5.230435e-03   p_cons 3.543696e-01   p_joint 1.454783e-02

Joint ci ratio: 6.154012e-02	ci left: 1.611311e-02	ci right 1.714028e-02	k: 3989	n:240000
Cons ci ratio: 1.080442e-02	ci left: 3.522862e-01	ci right 3.561173e-01	k: 85008	n:240000
KS ci ratio: 1.103633e-01	ci left: 4.940470e-03	ci right 5.521577e-03	k: 1254	n:240000
AQP12B   240000 perm   67 sec   (3609 perm/sec)   p_kst 5.225000e-03   p_cons 3.542000e-01   p_joint 1.662083e-02

Joint ci ratio: 5.761482e-02	ci left: 1.765594e-02	ci right 1.870728e-02	k: 4544	n:250000
Cons ci ratio: 1.058261e-02	ci left: 3.524767e-01	ci right 3.562306e-01	k: 88588	n:250000
KS ci ratio: 1.085640e-01	ci left: 4.906247e-03	ci right 5.473318e-03	k: 1296	n:250000
AQP12B   250000 perm   70 sec   (3557 perm/sec)   p_kst 5.184000e-03   p_cons 3.543520e-01   p_joint 1.817600e-02

Joint ci ratio: 5.725824e-02	ci left: 1.720041e-02	ci right 1.821807e-02	k: 4603	n:260000
Cons ci ratio: 1.037898e-02	ci left: 3.524305e-01	ci right 3.561112e-01	k: 92110	n:260000
KS ci ratio: 1.063717e-01	ci left: 4.919656e-03	ci right 5.476077e-03	k: 1350	n:260000
AQP12B   260000 perm   74 sec   (3511 perm/sec)   p_kst 5.192308e-03   p_cons 3.542692e-01   p_joint 1.770385e-02

Joint ci ratio: 7.428785e-02	ci left: 9.828047e-03	ci right 1.058993e-02	k: 2755	n:270000
Cons ci ratio: 9.837795e-03	ci left: 3.684707e-01	ci right 3.721172e-01	k: 99979	n:270000
KS ci ratio: 1.040840e-01	ci left: 4.953825e-03	ci right 5.501322e-03	k: 1410	n:270000
AQP12B   270000 perm   78 sec   (3465 perm/sec)   p_kst 5.222222e-03   p_cons 3.702926e-01   p_joint 1.020370e-02

Joint ci ratio: 7.454779e-02	ci left: 9.413882e-03	ci right 1.014632e-02	k: 2737	n:280000
Cons ci ratio: 9.657561e-03	ci left: 3.686465e-01	ci right 3.722276e-01	k: 103722	n:280000
KS ci ratio: 1.023231e-01	ci left: 4.947385e-03	ci right 5.484363e-03	k: 1459	n:280000
AQP12B   280000 perm   82 sec   (3420 perm/sec)   p_kst 5.210714e-03   p_cons 3.704357e-01   p_joint 9.775000e-03

Joint ci ratio: 7.467069e-02	ci left: 9.062132e-03	ci right 9.768413e-03	k: 2729	n:290000
Cons ci ratio: 9.488075e-03	ci left: 3.687522e-01	ci right 3.722711e-01	k: 107448	n:290000
KS ci ratio: 1.005816e-01	ci left: 4.948185e-03	ci right 5.475570e-03	k: 1510	n:290000
AQP12B   290000 perm   86 sec   (3377 perm/sec)   p_kst 5.206897e-03   p_cons 3.705103e-01   p_joint 9.410345e-03

Joint ci ratio: 7.335192e-02	ci left: 9.083957e-03	ci right 9.778902e-03	k: 2828	n:300000
Cons ci ratio: 9.329410e-03	ci left: 3.687415e-01	ci right 3.722010e-01	k: 111141	n:300000
KS ci ratio: 9.886258e-02	ci left: 4.955507e-03	ci right 5.474122e-03	k: 1563	n:300000
AQP12B   300000 perm   90 sec   (3335 perm/sec)   p_kst 5.210000e-03   p_cons 3.704700e-01   p_joint 9.426667e-03

Outputting figure to mutsig2_images.part000000000010/AQP12B.4_936_300000_0.00521_0.37047_0.0094267.png
                gene_name: AQP12B
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.0052 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.0094 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.0098 

Current progress: 63 percent done.
ARFGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
ARFGAP2   10000 perm   2 sec   (5560 perm/sec)   p_kst 9.733000e-01   p_cons 4.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARFGAP2.4_1630_10000_0.9733_0.4851_1.png
                gene_name: ARFGAP2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ARHGAP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
ARHGAP28   10000 perm   2 sec   (5708 perm/sec)   p_kst 2.430000e-02   p_cons 8.040000e-02   p_joint 4.270000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
KS ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
ARHGAP28   20000 perm   4 sec   (4873 perm/sec)   p_kst 2.545000e-02   p_cons 7.900000e-02   p_joint 2.115000e-02

Joint ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
Cons ci ratio: 7.709795e-02	ci left: 7.626656e-02	ci right 8.241520e-02	k: 2379	n:30000
KS ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
ARHGAP28   30000 perm   6 sec   (4716 perm/sec)   p_kst 2.603333e-02   p_cons 7.930000e-02   p_joint 3.900000e-02

Joint ci ratio: 1.138175e-01	ci left: 2.715851e-02	ci right 3.046037e-02	k: 1151	n:40000
Cons ci ratio: 6.667017e-02	ci left: 7.689169e-02	ci right 8.221954e-02	k: 3181	n:40000
KS ci ratio: 1.186221e-01	ci left: 2.499648e-02	ci right 2.817275e-02	k: 1062	n:40000
ARHGAP28   40000 perm   9 sec   (4620 perm/sec)   p_kst 2.655000e-02   p_cons 7.952500e-02   p_joint 2.877500e-02

Joint ci ratio: 1.088992e-01	ci left: 2.388276e-02	ci right 2.665273e-02	k: 1262	n:50000
Cons ci ratio: 5.983217e-02	ci left: 7.668962e-02	ci right 8.143939e-02	k: 3952	n:50000
KS ci ratio: 1.059252e-01	ci left: 2.524608e-02	ci right 2.808924e-02	k: 1332	n:50000
ARHGAP28   50000 perm   11 sec   (4550 perm/sec)   p_kst 2.664000e-02   p_cons 7.904000e-02   p_joint 2.524000e-02

Joint ci ratio: 9.149713e-02	ci left: 2.832353e-02	ci right 3.105554e-02	k: 1780	n:60000
Cons ci ratio: 5.430032e-02	ci left: 7.774250e-02	ci right 8.209823e-02	k: 4794	n:60000
KS ci ratio: 9.708973e-02	ci left: 2.516434e-02	ci right 2.774841e-02	k: 1586	n:60000
ARHGAP28   60000 perm   13 sec   (4479 perm/sec)   p_kst 2.643333e-02   p_cons 7.990000e-02   p_joint 2.966667e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP28.4_1920_60000_0.026433_0.0799_0.029667.png
                gene_name: ARHGAP28
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 66 percent done.
ARHGEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
ARHGEF10   10000 perm   2 sec   (5025 perm/sec)   p_kst 3.021000e-01   p_cons 6.547000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF10.4_4147_10000_0.3021_0.6547_0.5716.png
                gene_name: ARHGEF10
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 68 percent done.
ARHGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
ARHGEF4   10000 perm   2 sec   (5855 perm/sec)   p_kst 2.440000e-02   p_cons 3.673000e-01   p_joint 9.380000e-02

Joint ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
Cons ci ratio: 3.661981e-02	ci left: 3.575261e-01	ci right 3.709134e-01	k: 7284	n:20000
KS ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
ARHGEF4   20000 perm   4 sec   (5228 perm/sec)   p_kst 2.420000e-02   p_cons 3.642000e-01   p_joint 4.365000e-02

Joint ci ratio: 1.171695e-01	ci left: 3.385556e-02	ci right 3.810159e-02	k: 1078	n:30000
Cons ci ratio: 2.978085e-02	ci left: 3.606120e-01	ci right 3.715473e-01	k: 10982	n:30000
KS ci ratio: 1.475034e-01	ci left: 2.130123e-02	ci right 2.472534e-02	k: 689	n:30000
ARHGEF4   30000 perm   6 sec   (4991 perm/sec)   p_kst 2.296667e-02   p_cons 3.660667e-01   p_joint 3.593333e-02

Joint ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
Cons ci ratio: 2.576320e-02	ci left: 3.618501e-01	ci right 3.713193e-01	k: 14663	n:40000
KS ci ratio: 1.282424e-01	ci left: 2.135945e-02	ci right 2.431039e-02	k: 912	n:40000
ARHGEF4   40000 perm   8 sec   (4844 perm/sec)   p_kst 2.280000e-02   p_cons 3.665750e-01   p_joint 3.680000e-02

Joint ci ratio: 1.022412e-01	ci left: 2.709793e-02	ci right 3.003715e-02	k: 1427	n:50000
Cons ci ratio: 2.295326e-02	ci left: 3.641697e-01	ci right 3.726456e-01	k: 18420	n:50000
KS ci ratio: 1.154435e-01	ci left: 2.123730e-02	ci right 2.385853e-02	k: 1126	n:50000
ARHGEF4   50000 perm   11 sec   (4724 perm/sec)   p_kst 2.252000e-02   p_cons 3.684000e-01   p_joint 2.854000e-02

Joint ci ratio: 8.438504e-02	ci left: 3.324978e-02	ci right 3.619545e-02	k: 2082	n:60000
Cons ci ratio: 2.096101e-02	ci left: 3.643721e-01	ci right 3.721073e-01	k: 22094	n:60000
KS ci ratio: 1.048471e-01	ci left: 2.157172e-02	ci right 2.397475e-02	k: 1365	n:60000
ARHGEF4   60000 perm   13 sec   (4621 perm/sec)   p_kst 2.275000e-02   p_cons 3.682333e-01   p_joint 3.470000e-02

Joint ci ratio: 8.377616e-02	ci left: 2.905654e-02	ci right 3.161116e-02	k: 2122	n:70000
Cons ci ratio: 1.942431e-02	ci left: 3.642262e-01	ci right 3.713847e-01	k: 25746	n:70000
KS ci ratio: 9.702813e-02	ci left: 2.167902e-02	ci right 2.390363e-02	k: 1594	n:70000
ARHGEF4   70000 perm   15 sec   (4526 perm/sec)   p_kst 2.277143e-02   p_cons 3.678000e-01   p_joint 3.031429e-02

Outputting figure to mutsig2_images.part000000000010/ARHGEF4.4_2213_70000_0.022771_0.3678_0.030314.png
                gene_name: ARHGEF4
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 69 percent done.
ARHGEF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
Cons ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
KS ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
ARHGEF5   10000 perm   2 sec   (4522 perm/sec)   p_kst 3.492000e-01   p_cons 7.725000e-01   p_joint 4.557000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF5.4_4850_10000_0.3492_0.7725_0.4557.png
                gene_name: ARHGEF5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 71 percent done.
ARAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
Cons ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
KS ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
ARAF   10000 perm   2 sec   (6066 perm/sec)   p_kst 5.912000e-01   p_cons 2.269000e-01   p_joint 6.013000e-01

Outputting figure to mutsig2_images.part000000000010/ARAF.3_1881_10000_0.5912_0.2269_0.6013.png
                gene_name: ARAF
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 72 percent done.
ARFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
Cons ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
KS ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
ARFIP2   10000 perm   2 sec   (6309 perm/sec)   p_kst 6.570000e-02   p_cons 7.860000e-02   p_joint 2.700000e-02

Joint ci ratio: 1.837425e-01	ci left: 2.020279e-02	ci right 2.433773e-02	k: 444	n:20000
Cons ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
KS ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
ARFIP2   20000 perm   4 sec   (5606 perm/sec)   p_kst 6.695000e-02   p_cons 7.715000e-02   p_joint 2.220000e-02

Joint ci ratio: 2.113803e-01	ci left: 1.013476e-02	ci right 1.256126e-02	k: 339	n:30000
Cons ci ratio: 8.400739e-02	ci left: 6.481705e-02	ci right 7.053369e-02	k: 2029	n:30000
KS ci ratio: 8.337044e-02	ci left: 6.576487e-02	ci right 7.151901e-02	k: 2058	n:30000
ARFIP2   30000 perm   6 sec   (5338 perm/sec)   p_kst 6.860000e-02   p_cons 6.763333e-02   p_joint 1.130000e-02

Joint ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
Cons ci ratio: 7.263293e-02	ci left: 6.540440e-02	ci right 7.035856e-02	k: 2714	n:40000
KS ci ratio: 7.195291e-02	ci left: 6.658421e-02	ci right 7.157857e-02	k: 2762	n:40000
ARFIP2   40000 perm   8 sec   (5150 perm/sec)   p_kst 6.905000e-02   p_cons 6.785000e-02   p_joint 1.035000e-02

Joint ci ratio: 1.703446e-01	ci left: 9.586755e-03	ci right 1.139076e-02	k: 523	n:50000
Cons ci ratio: 6.475798e-02	ci left: 6.606460e-02	ci right 7.050569e-02	k: 3413	n:50000
KS ci ratio: 6.445456e-02	ci left: 6.665558e-02	ci right 7.111463e-02	k: 3443	n:50000
ARFIP2   50000 perm   10 sec   (5007 perm/sec)   p_kst 6.886000e-02   p_cons 6.826000e-02   p_joint 1.046000e-02

Joint ci ratio: 1.651720e-01	ci left: 8.531448e-03	ci right 1.008324e-02	k: 557	n:60000
Cons ci ratio: 5.892150e-02	ci left: 6.667219e-02	ci right 7.073631e-02	k: 4121	n:60000
KS ci ratio: 5.892918e-02	ci left: 6.665575e-02	ci right 7.071942e-02	k: 4120	n:60000
ARFIP2   60000 perm   12 sec   (4890 perm/sec)   p_kst 6.866667e-02   p_cons 6.868333e-02   p_joint 9.283333e-03

Joint ci ratio: 1.515164e-01	ci left: 8.753397e-03	ci right 1.020199e-02	k: 662	n:70000
Cons ci ratio: 5.478353e-02	ci left: 6.628690e-02	ci right 7.003470e-02	k: 4770	n:70000
KS ci ratio: 5.411702e-02	ci left: 6.783846e-02	ci right 7.162587e-02	k: 4880	n:70000
ARFIP2   70000 perm   15 sec   (4773 perm/sec)   p_kst 6.971429e-02   p_cons 6.814286e-02   p_joint 9.457143e-03

Joint ci ratio: 1.429465e-01	ci left: 8.646448e-03	ci right 9.989498e-03	k: 744	n:80000
Cons ci ratio: 5.141541e-02	ci left: 6.599324e-02	ci right 6.948818e-02	k: 5418	n:80000
KS ci ratio: 5.053082e-02	ci left: 6.819191e-02	ci right 7.173936e-02	k: 5596	n:80000
ARFIP2   80000 perm   17 sec   (4668 perm/sec)   p_kst 6.995000e-02   p_cons 6.772500e-02   p_joint 9.300000e-03

Joint ci ratio: 1.348628e-01	ci left: 8.672456e-03	ci right 9.937252e-03	k: 836	n:90000
Cons ci ratio: 4.872132e-02	ci left: 6.546285e-02	ci right 6.874289e-02	k: 6038	n:90000
KS ci ratio: 4.767198e-02	ci left: 6.820953e-02	ci right 7.155159e-02	k: 6288	n:90000
ARFIP2   90000 perm   20 sec   (4574 perm/sec)   p_kst 6.986667e-02   p_cons 6.708889e-02   p_joint 9.288889e-03

Joint ci ratio: 1.256441e-01	ci left: 9.033971e-03	ci right 1.025472e-02	k: 963	n:100000
Cons ci ratio: 4.618793e-02	ci left: 6.563601e-02	ci right 6.874915e-02	k: 6718	n:100000
KS ci ratio: 4.521791e-02	ci left: 6.831725e-02	ci right 7.148775e-02	k: 6989	n:100000
ARFIP2   100000 perm   22 sec   (4486 perm/sec)   p_kst 6.989000e-02   p_cons 6.718000e-02   p_joint 9.630000e-03

Joint ci ratio: 1.189727e-01	ci left: 9.190976e-03	ci right 1.036236e-02	k: 1074	n:110000
Cons ci ratio: 4.392676e-02	ci left: 6.602426e-02	ci right 6.899859e-02	k: 7425	n:110000
KS ci ratio: 4.308349e-02	ci left: 6.848101e-02	ci right 7.150535e-02	k: 7698	n:110000
ARFIP2   110000 perm   25 sec   (4402 perm/sec)   p_kst 6.998182e-02   p_cons 6.750000e-02   p_joint 9.763636e-03

Joint ci ratio: 1.143878e-01	ci left: 9.136980e-03	ci right 1.025357e-02	k: 1162	n:120000
Cons ci ratio: 4.208201e-02	ci left: 6.601254e-02	ci right 6.885841e-02	k: 8091	n:120000
KS ci ratio: 4.127285e-02	ci left: 6.847184e-02	ci right 7.136565e-02	k: 8389	n:120000
ARFIP2   120000 perm   28 sec   (4325 perm/sec)   p_kst 6.990833e-02   p_cons 6.742500e-02   p_joint 9.683333e-03

Joint ci ratio: 1.105631e-01	ci left: 9.047138e-03	ci right 1.011337e-02	k: 1244	n:130000
Cons ci ratio: 4.033088e-02	ci left: 6.637823e-02	ci right 6.911801e-02	k: 8806	n:130000
KS ci ratio: 3.980496e-02	ci left: 6.803955e-02	ci right 7.081046e-02	k: 9024	n:130000
ARFIP2   130000 perm   31 sec   (4254 perm/sec)   p_kst 6.941538e-02   p_cons 6.773846e-02   p_joint 9.569231e-03

Joint ci ratio: 1.060936e-01	ci left: 9.144519e-03	ci right 1.017594e-02	k: 1351	n:140000
Cons ci ratio: 3.880343e-02	ci left: 6.662298e-02	ci right 6.926638e-02	k: 9511	n:140000
KS ci ratio: 3.841489e-02	ci left: 6.789717e-02	ci right 7.056356e-02	k: 9691	n:140000
ARFIP2   140000 perm   33 sec   (4189 perm/sec)   p_kst 6.922143e-02   p_cons 6.793571e-02   p_joint 9.650000e-03

Joint ci ratio: 1.058912e-01	ci left: 8.573690e-03	ci right 9.538764e-03	k: 1357	n:150000
Cons ci ratio: 3.750630e-02	ci left: 6.660547e-02	ci right 6.915793e-02	k: 10181	n:150000
KS ci ratio: 3.634408e-02	ci left: 7.066379e-02	ci right 7.328612e-02	k: 10795	n:150000
ARFIP2   150000 perm   36 sec   (4126 perm/sec)   p_kst 7.196667e-02   p_cons 6.787333e-02   p_joint 9.046667e-03

Joint ci ratio: 1.025835e-01	ci left: 8.579584e-03	ci right 9.513336e-03	k: 1446	n:160000
Cons ci ratio: 3.633830e-02	ci left: 6.656667e-02	ci right 6.903652e-02	k: 10847	n:160000
KS ci ratio: 3.519615e-02	ci left: 7.068228e-02	ci right 7.322076e-02	k: 11511	n:160000
ARFIP2   160000 perm   39 sec   (4064 perm/sec)   p_kst 7.194375e-02   p_cons 6.779375e-02   p_joint 9.037500e-03

Joint ci ratio: 9.917746e-02	ci left: 8.654048e-03	ci right 9.562811e-03	k: 1547	n:170000
Cons ci ratio: 3.517483e-02	ci left: 6.688358e-02	ci right 6.928412e-02	k: 11573	n:170000
KS ci ratio: 3.421693e-02	ci left: 7.044297e-02	ci right 7.290107e-02	k: 12183	n:170000
ARFIP2   170000 perm   42 sec   (4004 perm/sec)   p_kst 7.166471e-02   p_cons 6.807647e-02   p_joint 9.100000e-03

Outputting figure to mutsig2_images.part000000000010/ARFIP2.3_1054_170000_0.071665_0.068076_0.0091.png
                gene_name: ARFIP2
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0087 
    ci_joint_bounds_right: 0.0096 

Current progress: 74 percent done.
ARHGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
Cons ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
ARHGAP1   10000 perm   2 sec   (6284 perm/sec)   p_kst 4.410000e-02   p_cons 2.350000e-01   p_joint 9.420000e-02

Joint ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
Cons ci ratio: 4.941996e-02	ci left: 2.333506e-01	ci right 2.452253e-01	k: 4785	n:20000
KS ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
ARHGAP1   20000 perm   4 sec   (5558 perm/sec)   p_kst 4.400000e-02   p_cons 2.392500e-01   p_joint 7.050000e-02

Joint ci ratio: 7.364037e-02	ci left: 8.311316e-02	ci right 8.950055e-02	k: 2588	n:30000
Cons ci ratio: 4.166875e-02	ci left: 2.230308e-01	ci right 2.325553e-01	k: 6833	n:30000
KS ci ratio: 1.059551e-01	ci left: 4.131689e-02	ci right 4.597201e-02	k: 1308	n:30000
ARHGAP1   30000 perm   6 sec   (5279 perm/sec)   p_kst 4.360000e-02   p_cons 2.277667e-01   p_joint 8.626667e-02

Joint ci ratio: 5.769975e-02	ci left: 1.004572e-01	ci right 1.064505e-01	k: 4137	n:40000
Cons ci ratio: 3.604017e-02	ci left: 2.241195e-01	ci right 2.323700e-01	k: 9129	n:40000
KS ci ratio: 9.246404e-02	ci left: 4.100833e-02	ci right 4.500836e-02	k: 1719	n:40000
ARHGAP1   40000 perm   8 sec   (5100 perm/sec)   p_kst 4.297500e-02   p_cons 2.282250e-01   p_joint 1.034250e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP1.3_1368_40000_0.042975_0.22823_0.10343.png
                gene_name: ARHGAP1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 75 percent done.
ARHGAP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
KS ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
ARHGAP11A   10000 perm   2 sec   (5409 perm/sec)   p_kst 3.865000e-01   p_cons 3.891000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP11A.3_3143_10000_0.3865_0.3891_0.4676.png
                gene_name: ARHGAP11A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 77 percent done.
ARHGAP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
Cons ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
KS ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
ARHGAP26   10000 perm   2 sec   (5643 perm/sec)   p_kst 1.870000e-02   p_cons 9.387000e-01   p_joint 6.210000e-02

Joint ci ratio: 1.217194e-01	ci left: 4.629176e-02	ci right 5.234013e-02	k: 985	n:20000
Cons ci ratio: 7.201679e-03	ci left: 9.333388e-01	ci right 9.401335e-01	k: 18736	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
ARHGAP26   20000 perm   4 sec   (5043 perm/sec)   p_kst 1.885000e-02   p_cons 9.368000e-01   p_joint 4.925000e-02

Joint ci ratio: 9.991828e-02	ci left: 4.635659e-02	ci right 5.126460e-02	k: 1463	n:30000
Cons ci ratio: 5.884532e-03	ci left: 9.338854e-01	ci right 9.394297e-01	k: 28101	n:30000
KS ci ratio: 1.623308e-01	ci left: 1.751715e-02	ci right 2.064363e-02	k: 571	n:30000
ARHGAP26   30000 perm   6 sec   (4815 perm/sec)   p_kst 1.903333e-02   p_cons 9.367000e-01   p_joint 4.876667e-02

Joint ci ratio: 1.189097e-01	ci left: 2.487510e-02	ci right 2.804415e-02	k: 1057	n:40000
Cons ci ratio: 4.895325e-03	ci left: 9.389517e-01	ci right 9.435840e-01	k: 37652	n:40000
KS ci ratio: 1.421751e-01	ci left: 1.732263e-02	ci right 1.999790e-02	k: 745	n:40000
ARHGAP26   40000 perm   9 sec   (4661 perm/sec)   p_kst 1.862500e-02   p_cons 9.413000e-01   p_joint 2.642500e-02

Joint ci ratio: 1.044061e-01	ci left: 2.598660e-02	ci right 2.886862e-02	k: 1370	n:50000
Cons ci ratio: 4.383120e-03	ci left: 9.390819e-01	ci right 9.432267e-01	k: 47059	n:50000
KS ci ratio: 1.273396e-01	ci left: 1.741439e-02	ci right 1.980197e-02	k: 929	n:50000
ARHGAP26   50000 perm   11 sec   (4535 perm/sec)   p_kst 1.858000e-02   p_cons 9.411800e-01   p_joint 2.740000e-02

Joint ci ratio: 9.397299e-02	ci left: 2.685735e-02	ci right 2.952188e-02	k: 1690	n:60000
Cons ci ratio: 4.160586e-03	ci left: 9.347221e-01	ci right 9.386356e-01	k: 56202	n:60000
KS ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
ARHGAP26   60000 perm   14 sec   (4436 perm/sec)   p_kst 1.911667e-02   p_cons 9.367000e-01   p_joint 2.816667e-02

Joint ci ratio: 8.713482e-02	ci left: 2.687424e-02	ci right 2.933652e-02	k: 1966	n:70000
Cons ci ratio: 3.850044e-03	ci left: 9.349287e-01	ci right 9.385492e-01	k: 65573	n:70000
KS ci ratio: 1.059348e-01	ci left: 1.816842e-02	ci right 2.021457e-02	k: 1342	n:70000
ARHGAP26   70000 perm   16 sec   (4348 perm/sec)   p_kst 1.917143e-02   p_cons 9.367571e-01   p_joint 2.808571e-02

Joint ci ratio: 6.935379e-02	ci left: 3.706664e-02	ci right 3.974196e-02	k: 3071	n:80000
Cons ci ratio: 3.608398e-03	ci left: 9.348133e-01	ci right 9.382049e-01	k: 74922	n:80000
KS ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
ARHGAP26   80000 perm   19 sec   (4267 perm/sec)   p_kst 1.927500e-02   p_cons 9.365250e-01   p_joint 3.838750e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP26.3_2537_80000_0.019275_0.93653_0.038387.png
                gene_name: ARHGAP26
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 78 percent done.
ARHGEF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
Cons ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
ARHGEF9   10000 perm   2 sec   (5936 perm/sec)   p_kst 3.756000e-01   p_cons 5.503000e-01   p_joint 3.954000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF9.3_1625_10000_0.3756_0.5503_0.3954.png
                gene_name: ARHGEF9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 80 percent done.
AQP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
AQP4   10000 perm   1 sec   (6729 perm/sec)   p_kst 7.044000e-01   p_cons 3.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP4.2_992_10000_0.7044_0.368_1.png
                gene_name: AQP4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
AQP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
KS ci ratio: 1.256392e-02	ci left: 9.010357e-01	ci right 9.125260e-01	k: 9069	n:10000
AQP6   10000 perm   2 sec   (6645 perm/sec)   p_kst 9.069000e-01   p_cons 4.083000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP6.2_865_10000_0.9069_0.4083_1.png
                gene_name: AQP6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ARF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
ARF4   10000 perm   1 sec   (7215 perm/sec)   p_kst 1.602000e-01   p_cons 5.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARF4.2_567_10000_0.1602_0.5048_1.png
                gene_name: ARF4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ARFGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
ARFGAP1   10000 perm   2 sec   (6568 perm/sec)   p_kst 5.347000e-01   p_cons 3.970000e-02   p_joint 3.374000e-01

Joint ci ratio: 3.963019e-02	ci left: 3.219414e-01	ci right 3.350085e-01	k: 6569	n:20000
Cons ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
KS ci ratio: 2.588669e-02	ci left: 5.271571e-01	ci right 5.410330e-01	k: 10682	n:20000
ARFGAP1   20000 perm   3 sec   (5809 perm/sec)   p_kst 5.341000e-01   p_cons 3.970000e-02   p_joint 3.284500e-01

Joint ci ratio: 3.465355e-02	ci left: 2.937892e-01	ci right 3.041831e-01	k: 8969	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 2.102952e-02	ci left: 5.309706e-01	ci right 5.422889e-01	k: 16099	n:30000
ARFGAP1   30000 perm   5 sec   (5522 perm/sec)   p_kst 5.366333e-01   p_cons 3.980000e-02   p_joint 2.989667e-01

Joint ci ratio: 2.662396e-02	ci left: 3.467698e-01	ci right 3.561518e-01	k: 14058	n:40000
Cons ci ratio: 9.552247e-02	ci left: 3.846696e-02	ci right 4.235012e-02	k: 1615	n:40000
KS ci ratio: 1.823093e-02	ci left: 5.312229e-01	ci right 5.410218e-01	k: 21445	n:40000
ARFGAP1   40000 perm   7 sec   (5343 perm/sec)   p_kst 5.361250e-01   p_cons 4.037500e-02   p_joint 3.514500e-01

Outputting figure to mutsig2_images.part000000000010/ARFGAP1.2_1303_40000_0.53612_0.040375_0.35145.png
                gene_name: ARFGAP1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 86 percent done.
ARFGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
Cons ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
KS ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
ARFGAP3   10000 perm   2 sec   (6370 perm/sec)   p_kst 4.323000e-01   p_cons 6.653000e-01   p_joint 7.310000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGAP3.2_1615_10000_0.4323_0.6653_0.731.png
                gene_name: ARFGAP3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 88 percent done.
ARFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.360353e-02	ci left: 7.251213e-01	ci right 7.425423e-01	k: 7339	n:10000
Cons ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
KS ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
ARFIP1   10000 perm   1 sec   (6695 perm/sec)   p_kst 6.787000e-01   p_cons 6.851000e-01   p_joint 7.339000e-01

Outputting figure to mutsig2_images.part000000000010/ARFIP1.2_1154_10000_0.6787_0.6851_0.7339.png
                gene_name: ARFIP1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 89 percent done.
ARGLU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KS ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
ARGLU1   10000 perm   1 sec   (7107 perm/sec)   p_kst 1.528000e-01   p_cons 7.007000e-01   p_joint 1.790000e-01

Outputting figure to mutsig2_images.part000000000010/ARGLU1.2_838_10000_0.1528_0.7007_0.179.png
                gene_name: ARGLU1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
ARHGAP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
Cons ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
ARHGAP19   10000 perm   1 sec   (6668 perm/sec)   p_kst 4.179000e-01   p_cons 3.362000e-01   p_joint 4.332000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP19.2_1533_10000_0.4179_0.3362_0.4332.png
                gene_name: ARHGAP19
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 92 percent done.
ARHGAP39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 4.075338e-02	ci left: 4.706645e-01	ci right 4.903468e-01	k: 4805	n:10000
ARHGAP39   10000 perm   2 sec   (5785 perm/sec)   p_kst 4.805000e-01   p_cons 7.005000e-01   p_joint 8.864000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP39.2_3389_10000_0.4805_0.7005_0.8864.png
                gene_name: ARHGAP39
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 94 percent done.
ARHGAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
Cons ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
KS ci ratio: 7.397016e-03	ci left: 9.619446e-01	ci right 9.691809e-01	k: 9657	n:10000
ARHGAP4   10000 perm   2 sec   (5949 perm/sec)   p_kst 9.657000e-01   p_cons 2.409000e-01   p_joint 8.105000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP4.2_3053_10000_0.9657_0.2409_0.8105.png
                gene_name: ARHGAP4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 95 percent done.
ARHGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
Cons ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
KS ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
ARHGEF1   10000 perm   2 sec   (5846 perm/sec)   p_kst 7.990000e-02   p_cons 1.128000e-01   p_joint 9.440000e-02

Joint ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
Cons ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
KS ci ratio: 9.730737e-02	ci left: 7.138662e-02	ci right 7.873749e-02	k: 1500	n:20000
ARHGEF1   20000 perm   4 sec   (4570 perm/sec)   p_kst 7.500000e-02   p_cons 1.153000e-01   p_joint 5.745000e-02

Joint ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
Cons ci ratio: 6.207372e-02	ci left: 1.136793e-01	ci right 1.209950e-01	k: 3519	n:30000
KS ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
ARHGEF1   30000 perm   7 sec   (4606 perm/sec)   p_kst 7.393333e-02   p_cons 1.173000e-01   p_joint 5.696667e-02

Outputting figure to mutsig2_images.part000000000010/ARHGEF1.2_2896_30000_0.073933_0.1173_0.056967.png
                gene_name: ARHGEF1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.060 

Current progress: 97 percent done.
ARHGEF35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
KS ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
ARHGEF35   10000 perm   2 sec   (5661 perm/sec)   p_kst 2.106000e-01   p_cons 9.694000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF35.2_1459_10000_0.2106_0.9694_0.7297.png
                gene_name: ARHGEF35
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 98 percent done.
ARHGEF38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
ARHGEF38   10000 perm   1 sec   (6887 perm/sec)   p_kst 7.576000e-01   p_cons 9.369000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGEF38.2_676_10000_0.7576_0.9369_1.png
                gene_name: ARHGEF38
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000010
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 10 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 4421710: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000011> was used as the working directory.
Started at Wed Oct 24 17:30:12 2012
Results reported at Wed Oct 24 17:46:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000011.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000011.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 11  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000011.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1117.91 sec.
    Max Memory :      5389 MB
    Max Swap   :      7777 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
11
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 11
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 11: processing genes 906 - 995
Calculating significance of each gene.
Using projection method.
906	ARID2	1.096511e-01
907	ARID3A	1
908	ARID3B	9.058063e-01
909	ARID3C	1.310608e-02
910	ARID4A	3.206332e-01
911	ARID4B	9.746987e-01
912	ARID5A	1
913	ARID5B	8.712835e-01
914	ARIH1	8.148228e-01
915	ARIH2	9.395361e-01
916	ARL1	1
917	ARL10	1
918	ARL11	1
919	ARL13A	1
920	ARL13B	1
921	ARL14	4.520304e-01
922	ARL15	1.105684e-01
923	ARL16	2.165088e-01
924	ARL2	6.275670e-01
925	ARL2BP	6.204162e-01
926	ARL3	6.970059e-01
927	ARL4A	1.696941e-01
928	ARL4C	1
929	ARL4D	1.335215e-01
930	ARL5A	3.480116e-01
931	ARL5B	3.992510e-01
932	ARL6	1
933	ARL6IP1	5.021812e-01
934	ARL6IP4	1
935	ARL6IP5	4.919111e-01
936	ARL6IP6	1
937	ARL8A	4.734226e-01
938	ARL8B	1
939	ARL9	3.191497e-01
940	ARMC1	9.706408e-02
941	ARMC10	1
942	ARMC2	9.731249e-01
943	ARMC3	1.597091e-01
944	ARMC4	4.376247e-01
945	ARMC5	1
946	ARMC6	9.286977e-01
947	ARMC7	6.078959e-01
948	ARMC8	1
949	ARMC9	1
950	ARMCX1	5.412094e-01
951	ARMCX2	9.568025e-01
952	ARMCX3	1.768426e-01
953	ARMCX5	3.757548e-01
954	ARMCX6	1
955	ARMS2	1
956	ARNT	9.629162e-01
957	ARNT2	9.707655e-01
958	ARNTL	9.141877e-01
959	ARNTL2	9.017986e-01
960	ARPC1A	8.324299e-01
961	ARPC1B	7.780412e-01
962	ARPC2	6.664936e-01
963	ARPC3	1.262365e-01
964	ARPC4	1
965	ARPC5	6.820880e-01
966	ARPC5L	1
967	ARPM1	5.244583e-01
968	ARPP19	1
969	ARPP21	3.870951e-04
970	ARR3	1.348203e-01
971	ARRB1	7.382085e-01
972	ARRB2	4.475604e-01
973	ARRDC1	9.347206e-01
974	ARRDC2	6.666247e-01
975	ARRDC3	7.273467e-01
976	ARRDC4	1.702331e-01
977	ARRDC5	4.591627e-01
978	ARSA	8.999921e-01
979	ARSB	9.241081e-01
980	ARSD	4.062443e-01
981	ARSE	1
982	ARSF	7.828416e-01
983	ARSG	5.151564e-01
984	ARSH	9.562003e-01
985	ARSI	1.141031e-01
986	ARSJ	4.877119e-01
987	ARSK	1
988	ART1	8.400873e-01
989	ART3	6.458231e-01
990	ART4	5.990026e-01
991	ART5	1.897319e-01
992	ARTN	1
993	ARV1	7.762337e-01
994	ARVCF	1
995	AS3MT	7.873499e-01
Done

Running MutSig 2:
Scatter job 11: processing genes 906 - 995
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARPP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.706228e-02	ci left: 6.679356e-01	ci right 6.863611e-01	k: 6772	n:10000
Cons ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
ARPP21   10000 perm   3 sec   (3702 perm/sec)   p_kst 5.078000e-01   p_cons 6.451000e-01   p_joint 6.772000e-01

Outputting figure to mutsig2_images.part000000000011/ARPP21.22_2524_10000_0.5078_0.6451_0.6772.png
                gene_name: ARPP21
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 2 percent done.
ARMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
Cons ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
KS ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
ARMC3   10000 perm   2 sec   (4156 perm/sec)   p_kst 6.090000e-02   p_cons 5.391000e-01   p_joint 1.363000e-01

Joint ci ratio: 6.364054e-02	ci left: 1.543517e-01	ci right 1.645475e-01	k: 3188	n:20000
Cons ci ratio: 2.568970e-02	ci left: 5.309603e-01	ci right 5.448287e-01	k: 10758	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
ARMC3   20000 perm   5 sec   (3776 perm/sec)   p_kst 6.190000e-02   p_cons 5.379000e-01   p_joint 1.594000e-01

Joint ci ratio: 6.059132e-02	ci left: 1.187113e-01	ci right 1.261620e-01	k: 3672	n:30000
Cons ci ratio: 2.128312e-02	ci left: 5.250000e-01	ci right 5.363274e-01	k: 15920	n:30000
KS ci ratio: 8.728080e-02	ci left: 6.024376e-02	ci right 6.577457e-02	k: 1889	n:30000
ARMC3   30000 perm   8 sec   (3651 perm/sec)   p_kst 6.296667e-02   p_cons 5.306667e-01   p_joint 1.224000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC3.18_2691_30000_0.062967_0.53067_0.1224.png
                gene_name: ARMC3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
ARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
ARID2   10000 perm   3 sec   (3153 perm/sec)   p_kst 5.888000e-01   p_cons 1.400000e-03   p_joint 9.600000e-03

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
KS ci ratio: 2.409327e-02	ci left: 5.627032e-01	ci right 5.764765e-01	k: 11392	n:20000
ARID2   20000 perm   7 sec   (2894 perm/sec)   p_kst 5.696000e-01   p_cons 1.550000e-03   p_joint 1.535000e-02

Joint ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
Cons ci ratio: 4.783612e-01	ci left: 1.701876e-03	ci right 2.798101e-03	k: 66	n:30000
KS ci ratio: 1.964440e-02	ci left: 5.646750e-01	ci right 5.759114e-01	k: 17109	n:30000
ARID2   30000 perm   11 sec   (2833 perm/sec)   p_kst 5.703000e-01   p_cons 2.200000e-03   p_joint 5.766667e-03

Joint ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
Cons ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
KS ci ratio: 1.703964e-02	ci left: 5.646553e-01	ci right 5.743846e-01	k: 22781	n:40000
ARID2   40000 perm   14 sec   (2784 perm/sec)   p_kst 5.695250e-01   p_cons 2.275000e-03   p_joint 2.145000e-02

Joint ci ratio: 1.179296e-01	ci left: 2.034360e-02	ci right 2.291236e-02	k: 1080	n:50000
Cons ci ratio: 3.559286e-01	ci left: 1.990227e-03	ci right 2.869137e-03	k: 120	n:50000
KS ci ratio: 1.518943e-02	ci left: 5.668280e-01	ci right 5.755237e-01	k: 28559	n:50000
ARID2   50000 perm   18 sec   (2734 perm/sec)   p_kst 5.711800e-01   p_cons 2.400000e-03   p_joint 2.160000e-02

Joint ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
Cons ci ratio: 3.251420e-01	ci left: 2.024388e-03	ci right 2.824957e-03	k: 144	n:60000
KS ci ratio: 1.382637e-02	ci left: 5.686132e-01	ci right 5.765465e-01	k: 34355	n:60000
ARID2   60000 perm   22 sec   (2684 perm/sec)   p_kst 5.725833e-01   p_cons 2.400000e-03   p_joint 1.911667e-02

Joint ci ratio: 1.193146e-01	ci left: 1.427892e-02	ci right 1.610445e-02	k: 1062	n:70000
Cons ci ratio: 2.976615e-01	ci left: 2.104002e-03	ci right 2.852478e-03	k: 172	n:70000
KS ci ratio: 1.279510e-02	ci left: 5.691254e-01	ci right 5.764686e-01	k: 40096	n:70000
ARID2   70000 perm   27 sec   (2639 perm/sec)   p_kst 5.728000e-01   p_cons 2.457143e-03   p_joint 1.517143e-02

Joint ci ratio: 1.405846e-01	ci left: 8.947960e-03	ci right 1.031296e-02	k: 769	n:80000
Cons ci ratio: 2.621349e-01	ci left: 2.422357e-03	ci right 3.164430e-03	k: 222	n:80000
KS ci ratio: 1.196386e-02	ci left: 5.695635e-01	ci right 5.764312e-01	k: 45840	n:80000
ARID2   80000 perm   31 sec   (2601 perm/sec)   p_kst 5.730000e-01   p_cons 2.775000e-03   p_joint 9.612500e-03

Joint ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
Cons ci ratio: 2.564737e-01	ci left: 2.257071e-03	ci right 2.931183e-03	k: 232	n:90000
KS ci ratio: 1.126992e-02	ci left: 5.701831e-01	ci right 5.766566e-01	k: 51608	n:90000
ARID2   90000 perm   35 sec   (2566 perm/sec)   p_kst 5.734222e-01   p_cons 2.577778e-03   p_joint 1.001111e-02

Joint ci ratio: 1.191945e-01	ci left: 1.006184e-02	ci right 1.134678e-02	k: 1069	n:100000
Cons ci ratio: 2.413983e-01	ci left: 2.312672e-03	ci right 2.956717e-03	k: 262	n:100000
KS ci ratio: 1.068007e-02	ci left: 5.708780e-01	ci right 5.770177e-01	k: 57395	n:100000
ARID2   100000 perm   40 sec   (2531 perm/sec)   p_kst 5.739500e-01   p_cons 2.620000e-03   p_joint 1.069000e-02

Joint ci ratio: 1.177618e-01	ci left: 9.385109e-03	ci right 1.056822e-02	k: 1096	n:110000
Cons ci ratio: 2.335477e-01	ci left: 2.256323e-03	ci right 2.861289e-03	k: 280	n:110000
KS ci ratio: 1.017275e-02	ci left: 5.715172e-01	ci right 5.773698e-01	k: 63189	n:110000
ARID2   110000 perm   44 sec   (2498 perm/sec)   p_kst 5.744455e-01   p_cons 2.545455e-03   p_joint 9.963636e-03

Joint ci ratio: 9.001340e-02	ci left: 1.485752e-02	ci right 1.626603e-02	k: 1866	n:120000
Cons ci ratio: 2.256606e-01	ci left: 2.225374e-03	ci right 2.799090e-03	k: 300	n:120000
KS ci ratio: 9.740910e-03	ci left: 5.715799e-01	ci right 5.771832e-01	k: 68926	n:120000
ARID2   120000 perm   49 sec   (2468 perm/sec)   p_kst 5.743833e-01   p_cons 2.500000e-03   p_joint 1.555000e-02

Joint ci ratio: 8.549101e-02	ci left: 1.523452e-02	ci right 1.660258e-02	k: 2068	n:130000
Cons ci ratio: 2.192076e-01	ci left: 2.184934e-03	ci right 2.729946e-03	k: 318	n:130000
KS ci ratio: 9.354477e-03	ci left: 5.719147e-01	ci right 5.772974e-01	k: 74699	n:130000
ARID2   130000 perm   53 sec   (2440 perm/sec)   p_kst 5.746077e-01   p_cons 2.446154e-03   p_joint 1.590769e-02

Joint ci ratio: 8.487662e-02	ci left: 1.436977e-02	ci right 1.565043e-02	k: 2100	n:140000
Cons ci ratio: 2.095703e-01	ci left: 2.231658e-03	ci right 2.760712e-03	k: 348	n:140000
KS ci ratio: 9.017640e-03	ci left: 5.718264e-01	ci right 5.770134e-01	k: 80419	n:140000
ARID2   140000 perm   58 sec   (2416 perm/sec)   p_kst 5.744214e-01   p_cons 2.485714e-03   p_joint 1.500000e-02

Joint ci ratio: 8.008886e-02	ci left: 1.509002e-02	ci right 1.635547e-02	k: 2357	n:150000
Cons ci ratio: 2.013682e-01	ci left: 2.266274e-03	ci right 2.779923e-03	k: 377	n:150000
KS ci ratio: 8.714631e-03	ci left: 5.717597e-01	ci right 5.767708e-01	k: 86140	n:150000
ARID2   150000 perm   63 sec   (2387 perm/sec)   p_kst 5.742667e-01   p_cons 2.513333e-03   p_joint 1.571333e-02

Joint ci ratio: 8.487561e-02	ci left: 1.259753e-02	ci right 1.372022e-02	k: 2104	n:160000
Cons ci ratio: 1.935830e-01	ci left: 2.308810e-03	ci right 2.809487e-03	k: 408	n:160000
KS ci ratio: 8.433883e-03	ci left: 5.720729e-01	ci right 5.769244e-01	k: 91920	n:160000
ARID2   160000 perm   68 sec   (2360 perm/sec)   p_kst 5.745000e-01   p_cons 2.550000e-03   p_joint 1.315000e-02

Joint ci ratio: 8.534096e-02	ci left: 1.173537e-02	ci right 1.278724e-02	k: 2083	n:170000
Cons ci ratio: 1.874925e-01	ci left: 2.324248e-03	ci right 2.810610e-03	k: 435	n:170000
KS ci ratio: 8.191921e-03	ci left: 5.715569e-01	ci right 5.762641e-01	k: 97565	n:170000
ARID2   170000 perm   73 sec   (2333 perm/sec)   p_kst 5.739118e-01   p_cons 2.558824e-03   p_joint 1.225294e-02

Joint ci ratio: 8.119566e-02	ci left: 1.226400e-02	ci right 1.330733e-02	k: 2300	n:180000
Cons ci ratio: 1.831364e-01	ci left: 2.306376e-03	ci right 2.776541e-03	k: 456	n:180000
KS ci ratio: 7.952181e-03	ci left: 5.721731e-01	ci right 5.767468e-01	k: 103403	n:180000
ARID2   180000 perm   78 sec   (2310 perm/sec)   p_kst 5.744611e-01   p_cons 2.533333e-03   p_joint 1.277778e-02

Joint ci ratio: 6.839571e-02	ci left: 1.641313e-02	ci right 1.758062e-02	k: 3228	n:190000
Cons ci ratio: 1.777702e-01	ci left: 2.325703e-03	ci right 2.784422e-03	k: 484	n:190000
KS ci ratio: 7.344723e-03	ci left: 5.976666e-01	ci right 6.020777e-01	k: 113976	n:190000
ARID2   190000 perm   83 sec   (2286 perm/sec)   p_kst 5.998737e-01   p_cons 2.547368e-03   p_joint 1.698947e-02

Joint ci ratio: 6.605316e-02	ci left: 1.673307e-02	ci right 1.788098e-02	k: 3460	n:200000
Cons ci ratio: 1.735293e-01	ci left: 2.324142e-03	ci right 2.770471e-03	k: 508	n:200000
KS ci ratio: 7.158957e-03	ci left: 5.977089e-01	ci right 6.020082e-01	k: 119972	n:200000
ARID2   200000 perm   88 sec   (2264 perm/sec)   p_kst 5.998600e-01   p_cons 2.540000e-03   p_joint 1.730000e-02

Joint ci ratio: 6.257802e-02	ci left: 1.776852e-02	ci right 1.892102e-02	k: 3851	n:210000
Cons ci ratio: 1.698979e-01	ci left: 2.313727e-03	ci right 2.747805e-03	k: 530	n:210000
KS ci ratio: 6.988757e-03	ci left: 5.976007e-01	ci right 6.017965e-01	k: 125937	n:210000
ARID2   210000 perm   94 sec   (2242 perm/sec)   p_kst 5.997000e-01   p_cons 2.523810e-03   p_joint 1.833810e-02

Joint ci ratio: 6.221936e-02	ci left: 1.717100e-02	ci right 1.827812e-02	k: 3898	n:220000
Cons ci ratio: 1.654389e-01	ci left: 2.334847e-03	ci right 2.760247e-03	k: 559	n:220000
KS ci ratio: 6.831115e-03	ci left: 5.974352e-01	ci right 6.015349e-01	k: 131887	n:220000
ARID2   220000 perm   99 sec   (2222 perm/sec)   p_kst 5.994864e-01   p_cons 2.540909e-03   p_joint 1.771818e-02

Joint ci ratio: 6.114427e-02	ci left: 1.701942e-02	ci right 1.809714e-02	k: 4037	n:230000
Cons ci ratio: 1.624231e-01	ci left: 2.320889e-03	ci right 2.735285e-03	k: 580	n:230000
KS ci ratio: 6.680108e-03	ci left: 5.975419e-01	ci right 6.015512e-01	k: 137896	n:230000
ARID2   230000 perm   105 sec   (2199 perm/sec)   p_kst 5.995478e-01   p_cons 2.521739e-03   p_joint 1.755217e-02

Joint ci ratio: 6.026261e-02	ci left: 1.680263e-02	ci right 1.785074e-02	k: 4157	n:240000
Cons ci ratio: 1.594337e-01	ci left: 2.312160e-03	ci right 2.716671e-03	k: 602	n:240000
KS ci ratio: 6.541530e-03	ci left: 5.974321e-01	ci right 6.013572e-01	k: 143855	n:240000
ARID2   240000 perm   110 sec   (2178 perm/sec)   p_kst 5.993958e-01   p_cons 2.508333e-03   p_joint 1.732083e-02

Joint ci ratio: 6.439088e-02	ci left: 1.413739e-02	ci right 1.508191e-02	k: 3651	n:250000
Cons ci ratio: 1.567293e-01	ci left: 2.300349e-03	ci right 2.695326e-03	k: 623	n:250000
KS ci ratio: 6.411766e-03	ci left: 5.972919e-01	ci right 6.011378e-01	k: 149804	n:250000
ARID2   250000 perm   116 sec   (2157 perm/sec)   p_kst 5.992160e-01   p_cons 2.492000e-03   p_joint 1.460400e-02

Joint ci ratio: 6.382678e-02	ci left: 1.384336e-02	ci right 1.475982e-02	k: 3717	n:260000
Cons ci ratio: 1.536810e-01	ci left: 2.304294e-03	ci right 2.691544e-03	k: 648	n:260000
KS ci ratio: 6.288068e-03	ci left: 5.972671e-01	ci right 6.010384e-01	k: 155780	n:260000
ARID2   260000 perm   122 sec   (2137 perm/sec)   p_kst 5.991538e-01   p_cons 2.492308e-03   p_joint 1.429615e-02

Joint ci ratio: 6.289029e-02	ci left: 1.373886e-02	ci right 1.463458e-02	k: 3829	n:270000
Cons ci ratio: 1.505801e-01	ci left: 2.315145e-03	ci right 2.695660e-03	k: 675	n:270000
KS ci ratio: 6.171550e-03	ci left: 5.972226e-01	ci right 6.009234e-01	k: 161750	n:270000
ARID2   270000 perm   128 sec   (2117 perm/sec)   p_kst 5.990741e-01   p_cons 2.500000e-03   p_joint 1.418148e-02

Joint ci ratio: 6.040486e-02	ci left: 1.437005e-02	ci right 1.526860e-02	k: 4148	n:280000
Cons ci ratio: 1.477650e-01	ci left: 2.321853e-03	ci right 2.695706e-03	k: 701	n:280000
KS ci ratio: 6.061232e-03	ci left: 5.971854e-01	ci right 6.008196e-01	k: 167721	n:280000
ARID2   280000 perm   133 sec   (2100 perm/sec)   p_kst 5.990036e-01   p_cons 2.503571e-03   p_joint 1.481429e-02

Joint ci ratio: 6.003270e-02	ci left: 1.405447e-02	ci right 1.492768e-02	k: 4201	n:290000
Cons ci ratio: 1.459081e-01	ci left: 2.301576e-03	ci right 2.667101e-03	k: 719	n:290000
KS ci ratio: 5.955557e-03	ci left: 5.972377e-01	ci right 6.008086e-01	k: 173717	n:290000
ARID2   290000 perm   139 sec   (2080 perm/sec)   p_kst 5.990241e-01   p_cons 2.479310e-03   p_joint 1.448621e-02

Joint ci ratio: 5.971677e-02	ci left: 1.373696e-02	ci right 1.458580e-02	k: 4247	n:300000
Cons ci ratio: 1.437294e-01	ci left: 2.295532e-03	ci right 2.654187e-03	k: 741	n:300000
KS ci ratio: 5.852948e-03	ci left: 5.974738e-01	ci right 6.009843e-01	k: 179769	n:300000
ARID2   300000 perm   146 sec   (2061 perm/sec)   p_kst 5.992300e-01   p_cons 2.470000e-03   p_joint 1.415667e-02

Joint ci ratio: 6.024311e-02	ci left: 1.306810e-02	ci right 1.388297e-02	k: 4176	n:310000
Cons ci ratio: 1.414600e-01	ci left: 2.296140e-03	ci right 2.648748e-03	k: 765	n:310000
KS ci ratio: 5.758983e-03	ci left: 5.974013e-01	ci right 6.008549e-01	k: 185730	n:310000
ARID2   310000 perm   152 sec   (2042 perm/sec)   p_kst 5.991290e-01   p_cons 2.467742e-03   p_joint 1.347097e-02

Joint ci ratio: 5.747539e-02	ci left: 1.391613e-02	ci right 1.474270e-02	k: 4584	n:320000
Cons ci ratio: 1.396497e-01	ci left: 2.284687e-03	ci right 2.630672e-03	k: 785	n:320000
KS ci ratio: 5.667780e-03	ci left: 5.974715e-01	ci right 6.008705e-01	k: 191735	n:320000
ARID2   320000 perm   158 sec   (2024 perm/sec)   p_kst 5.991719e-01   p_cons 2.453125e-03   p_joint 1.432500e-02

Joint ci ratio: 5.827942e-02	ci left: 1.312993e-02	ci right 1.392107e-02	k: 4462	n:330000
Cons ci ratio: 1.381652e-01	ci left: 2.265177e-03	ci right 2.604261e-03	k: 802	n:330000
KS ci ratio: 5.581340e-03	ci left: 5.974892e-01	ci right 6.008363e-01	k: 197724	n:330000
ARID2   330000 perm   164 sec   (2007 perm/sec)   p_kst 5.991636e-01   p_cons 2.430303e-03   p_joint 1.352121e-02

Joint ci ratio: 5.781392e-02	ci left: 1.295531e-02	ci right 1.372949e-02	k: 4535	n:340000
Cons ci ratio: 1.363939e-01	ci left: 2.258197e-03	ci right 2.591550e-03	k: 823	n:340000
KS ci ratio: 5.498301e-03	ci left: 5.975446e-01	ci right 6.008420e-01	k: 203726	n:340000
ARID2   340000 perm   171 sec   (1990 perm/sec)   p_kst 5.991941e-01   p_cons 2.420588e-03   p_joint 1.333824e-02

Joint ci ratio: 5.756210e-02	ci left: 1.270057e-02	ci right 1.345610e-02	k: 4576	n:350000
Cons ci ratio: 1.346890e-01	ci left: 2.251642e-03	ci right 2.579540e-03	k: 844	n:350000
KS ci ratio: 5.419634e-03	ci left: 5.975285e-01	ci right 6.007785e-01	k: 209704	n:350000
ARID2   350000 perm   177 sec   (1974 perm/sec)   p_kst 5.991543e-01   p_cons 2.411429e-03   p_joint 1.307429e-02

Joint ci ratio: 5.706341e-02	ci left: 1.256952e-02	ci right 1.331057e-02	k: 4657	n:360000
Cons ci ratio: 1.331236e-01	ci left: 2.242790e-03	ci right 2.565303e-03	k: 864	n:360000
KS ci ratio: 5.342551e-03	ci left: 5.976665e-01	ci right 6.008708e-01	k: 215737	n:360000
ARID2   360000 perm   184 sec   (1957 perm/sec)   p_kst 5.992694e-01   p_cons 2.400000e-03   p_joint 1.293611e-02

Joint ci ratio: 5.597036e-02	ci left: 1.271744e-02	ci right 1.345238e-02	k: 4840	n:370000
Cons ci ratio: 1.315370e-01	ci left: 2.237052e-03	ci right 2.554606e-03	k: 885	n:370000
KS ci ratio: 5.272224e-03	ci left: 5.974728e-01	ci right 6.006338e-01	k: 221650	n:370000
ARID2   370000 perm   191 sec   (1940 perm/sec)   p_kst 5.990541e-01   p_cons 2.391892e-03   p_joint 1.308108e-02

Joint ci ratio: 5.728264e-02	ci left: 1.182483e-02	ci right 1.252474e-02	k: 4625	n:380000
Cons ci ratio: 1.300059e-01	ci left: 2.231637e-03	ci right 2.544450e-03	k: 906	n:380000
KS ci ratio: 5.202121e-03	ci left: 5.975187e-01	ci right 6.006377e-01	k: 227650	n:380000
ARID2   380000 perm   197 sec   (1924 perm/sec)   p_kst 5.990789e-01   p_cons 2.384211e-03   p_joint 1.217105e-02

Joint ci ratio: 5.887019e-02	ci left: 1.090998e-02	ci right 1.157424e-02	k: 4383	n:390000
Cons ci ratio: 1.280438e-01	ci left: 2.243894e-03	ci right 2.553317e-03	k: 934	n:390000
KS ci ratio: 5.133673e-03	ci left: 5.976625e-01	ci right 6.007411e-01	k: 233689	n:390000
ARID2   390000 perm   204 sec   (1908 perm/sec)   p_kst 5.992026e-01   p_cons 2.394872e-03   p_joint 1.123846e-02

Joint ci ratio: 5.852860e-02	ci left: 1.076530e-02	ci right 1.141682e-02	k: 4435	n:400000
Cons ci ratio: 1.268297e-01	ci left: 2.231361e-03	ci right 2.535919e-03	k: 952	n:400000
KS ci ratio: 5.068727e-03	ci left: 5.977169e-01	ci right 6.007567e-01	k: 239695	n:400000
ARID2   400000 perm   211 sec   (1892 perm/sec)   p_kst 5.992375e-01   p_cons 2.380000e-03   p_joint 1.108750e-02

Joint ci ratio: 5.332311e-02	ci left: 1.266272e-02	ci right 1.335882e-02	k: 5333	n:410000
Cons ci ratio: 1.255201e-01	ci left: 2.224178e-03	ci right 2.524388e-03	k: 972	n:410000
KS ci ratio: 5.007101e-03	ci left: 5.976809e-01	ci right 6.006835e-01	k: 245665	n:410000
ARID2   410000 perm   218 sec   (1877 perm/sec)   p_kst 5.991829e-01   p_cons 2.370732e-03   p_joint 1.300732e-02

Joint ci ratio: 5.270941e-02	ci left: 1.265490e-02	ci right 1.334232e-02	k: 5458	n:420000
Cons ci ratio: 1.237515e-01	ci left: 2.235810e-03	ci right 2.533026e-03	k: 1000	n:420000
KS ci ratio: 4.946713e-03	ci left: 5.977399e-01	ci right 6.007064e-01	k: 251674	n:420000
ARID2   420000 perm   226 sec   (1862 perm/sec)   p_kst 5.992238e-01   p_cons 2.380952e-03   p_joint 1.299524e-02

Joint ci ratio: 5.204093e-02	ci left: 1.268422e-02	ci right 1.336423e-02	k: 5599	n:430000
Cons ci ratio: 1.221151e-01	ci left: 2.244675e-03	ci right 2.538839e-03	k: 1027	n:430000
KS ci ratio: 4.889476e-03	ci left: 5.976962e-01	ci right 6.006281e-01	k: 257640	n:430000
ARID2   430000 perm   233 sec   (1846 perm/sec)   p_kst 5.991628e-01   p_cons 2.388372e-03   p_joint 1.302093e-02

Joint ci ratio: 5.081303e-02	ci left: 1.300623e-02	ci right 1.368657e-02	k: 5871	n:440000
Cons ci ratio: 1.204275e-01	ci left: 2.257570e-03	ci right 2.549044e-03	k: 1056	n:440000
KS ci ratio: 4.835165e-03	ci left: 5.975569e-01	ci right 6.004554e-01	k: 263563	n:440000
ARID2   440000 perm   240 sec   (1832 perm/sec)   p_kst 5.990068e-01   p_cons 2.400000e-03   p_joint 1.334318e-02

Joint ci ratio: 5.022178e-02	ci left: 1.302219e-02	ci right 1.369521e-02	k: 6010	n:450000
Cons ci ratio: 1.191938e-01	ci left: 2.254825e-03	ci right 2.542753e-03	k: 1078	n:450000
KS ci ratio: 4.781428e-03	ci left: 5.975441e-01	ci right 6.004102e-01	k: 269540	n:450000
ARID2   450000 perm   248 sec   (1818 perm/sec)   p_kst 5.989778e-01   p_cons 2.395556e-03   p_joint 1.335556e-02

Joint ci ratio: 4.938281e-02	ci left: 1.317923e-02	ci right 1.384866e-02	k: 6215	n:460000
Cons ci ratio: 1.181047e-01	ci left: 2.247995e-03	ci right 2.532244e-03	k: 1098	n:460000
KS ci ratio: 4.729145e-03	ci left: 5.975624e-01	ci right 6.003972e-01	k: 275531	n:460000
ARID2   460000 perm   255 sec   (1804 perm/sec)   p_kst 5.989804e-01   p_cons 2.386957e-03   p_joint 1.351087e-02

Joint ci ratio: 4.824281e-02	ci left: 1.351887e-02	ci right 1.418927e-02	k: 6510	n:470000
Cons ci ratio: 1.173080e-01	ci left: 2.231139e-03	ci right 2.511222e-03	k: 1113	n:470000
KS ci ratio: 4.678602e-03	ci left: 5.975738e-01	ci right 6.003782e-01	k: 281519	n:470000
ARID2   470000 perm   263 sec   (1790 perm/sec)   p_kst 5.989766e-01   p_cons 2.368085e-03   p_joint 1.385106e-02

Joint ci ratio: 4.760182e-02	ci left: 1.359952e-02	ci right 1.426470e-02	k: 6686	n:480000
Cons ci ratio: 1.156071e-01	ci left: 2.251406e-03	ci right 2.529655e-03	k: 1146	n:480000
KS ci ratio: 4.629585e-03	ci left: 5.975910e-01	ci right 6.003661e-01	k: 287510	n:480000
ARID2   480000 perm   270 sec   (1776 perm/sec)   p_kst 5.989792e-01   p_cons 2.387500e-03   p_joint 1.392917e-02

Joint ci ratio: 4.665246e-02	ci left: 1.387260e-02	ci right 1.453725e-02	k: 6959	n:490000
Cons ci ratio: 1.140750e-01	ci left: 2.266908e-03	ci right 2.543110e-03	k: 1177	n:490000
KS ci ratio: 4.580443e-03	ci left: 5.977793e-01	ci right 6.005257e-01	k: 293585	n:490000
ARID2   490000 perm   278 sec   (1762 perm/sec)   p_kst 5.991531e-01   p_cons 2.402041e-03   p_joint 1.420204e-02

Joint ci ratio: 4.562964e-02	ci left: 1.421398e-02	ci right 1.487966e-02	k: 7272	n:500000
Cons ci ratio: 1.131666e-01	ci left: 2.258489e-03	ci right 2.531328e-03	k: 1196	n:500000
KS ci ratio: 4.535323e-03	ci left: 5.976960e-01	ci right 6.004149e-01	k: 299528	n:500000
ARID2   500000 perm   286 sec   (1748 perm/sec)   p_kst 5.990560e-01   p_cons 2.392000e-03   p_joint 1.454400e-02

Joint ci ratio: 4.532120e-02	ci left: 1.412911e-02	ci right 1.478623e-02	k: 7372	n:510000
Cons ci ratio: 1.120029e-01	ci left: 2.261844e-03	ci right 2.532093e-03	k: 1221	n:510000
KS ci ratio: 4.491181e-03	ci left: 5.976514e-01	ci right 6.003435e-01	k: 305489	n:510000
ARID2   510000 perm   294 sec   (1735 perm/sec)   p_kst 5.989980e-01   p_cons 2.394118e-03   p_joint 1.445490e-02

Joint ci ratio: 4.576399e-02	ci left: 1.359495e-02	ci right 1.423356e-02	k: 7234	n:520000
Cons ci ratio: 1.110530e-01	ci left: 2.257605e-03	ci right 2.524910e-03	k: 1242	n:520000
KS ci ratio: 4.447217e-03	ci left: 5.977261e-01	ci right 6.003921e-01	k: 311511	n:520000
ARID2   520000 perm   302 sec   (1721 perm/sec)   p_kst 5.990596e-01   p_cons 2.388462e-03   p_joint 1.391154e-02

Joint ci ratio: 4.433221e-02	ci left: 1.421534e-02	ci right 1.486168e-02	k: 7704	n:530000
Cons ci ratio: 1.101270e-01	ci left: 2.253535e-03	ci right 2.517989e-03	k: 1263	n:530000
KS ci ratio: 4.404191e-03	ci left: 5.978339e-01	ci right 6.004745e-01	k: 317552	n:530000
ARID2   530000 perm   310 sec   (1708 perm/sec)   p_kst 5.991547e-01   p_cons 2.383019e-03   p_joint 1.453585e-02

Joint ci ratio: 4.385290e-02	ci left: 1.426162e-02	ci right 1.490287e-02	k: 7873	n:540000
Cons ci ratio: 1.088844e-01	ci left: 2.264037e-03	ci right 2.526533e-03	k: 1292	n:540000
KS ci ratio: 4.361666e-03	ci left: 5.980175e-01	ci right 6.006333e-01	k: 323636	n:540000
ARID2   540000 perm   318 sec   (1696 perm/sec)   p_kst 5.993259e-01   p_cons 2.392593e-03   p_joint 1.457963e-02

Joint ci ratio: 4.418732e-02	ci left: 1.379545e-02	ci right 1.442059e-02	k: 7758	n:550000
Cons ci ratio: 1.074389e-01	ci left: 2.284788e-03	ci right 2.545952e-03	k: 1327	n:550000
KS ci ratio: 4.320087e-03	ci left: 5.982236e-01	ci right 6.008153e-01	k: 329736	n:550000
ARID2   550000 perm   327 sec   (1684 perm/sec)   p_kst 5.995200e-01   p_cons 2.412727e-03   p_joint 1.410545e-02

Joint ci ratio: 4.306973e-02	ci left: 1.426274e-02	ci right 1.489230e-02	k: 8162	n:560000
Cons ci ratio: 1.067585e-01	ci left: 2.273532e-03	ci right 2.531659e-03	k: 1344	n:560000
KS ci ratio: 4.281041e-03	ci left: 5.982688e-01	ci right 6.008373e-01	k: 335750	n:560000
ARID2   560000 perm   335 sec   (1672 perm/sec)   p_kst 5.995536e-01   p_cons 2.400000e-03   p_joint 1.457500e-02

Joint ci ratio: 4.268183e-02	ci left: 1.427111e-02	ci right 1.489524e-02	k: 8311	n:570000
Cons ci ratio: 1.057412e-01	ci left: 2.278047e-03	ci right 2.534069e-03	k: 1370	n:570000
KS ci ratio: 4.243796e-03	ci left: 5.982266e-01	ci right 6.007724e-01	k: 341715	n:570000
ARID2   570000 perm   344 sec   (1659 perm/sec)   p_kst 5.995000e-01   p_cons 2.403509e-03   p_joint 1.458070e-02

Joint ci ratio: 4.229409e-02	ci left: 1.428605e-02	ci right 1.490502e-02	k: 8464	n:580000
Cons ci ratio: 1.049786e-01	ci left: 2.272345e-03	ci right 2.525770e-03	k: 1390	n:580000
KS ci ratio: 4.206025e-03	ci left: 5.983549e-01	ci right 6.008786e-01	k: 347778	n:580000
ARID2   580000 perm   352 sec   (1647 perm/sec)   p_kst 5.996172e-01   p_cons 2.396552e-03   p_joint 1.459310e-02

Joint ci ratio: 4.211553e-02	ci left: 1.416632e-02	ci right 1.477744e-02	k: 8537	n:590000
Cons ci ratio: 1.038640e-01	ci left: 2.283350e-03	ci right 2.535135e-03	k: 1420	n:590000
KS ci ratio: 4.171748e-03	ci left: 5.981907e-01	ci right 6.006931e-01	k: 353671	n:590000
ARID2   590000 perm   361 sec   (1636 perm/sec)   p_kst 5.994424e-01   p_cons 2.406780e-03   p_joint 1.446949e-02

Joint ci ratio: 4.143675e-02	ci left: 1.439204e-02	ci right 1.500266e-02	k: 8817	n:600000
Cons ci ratio: 1.027132e-01	ci left: 2.297251e-03	ci right 2.547592e-03	k: 1452	n:600000
KS ci ratio: 4.137087e-03	ci left: 5.981721e-01	ci right 6.006536e-01	k: 359648	n:600000
ARID2   600000 perm   369 sec   (1625 perm/sec)   p_kst 5.994133e-01   p_cons 2.420000e-03   p_joint 1.469500e-02

Joint ci ratio: 4.108399e-02	ci left: 1.440272e-02	ci right 1.500846e-02	k: 8969	n:610000
Cons ci ratio: 1.018063e-01	ci left: 2.301124e-03	ci right 2.549541e-03	k: 1478	n:610000
KS ci ratio: 4.103249e-03	ci left: 5.981575e-01	ci right 6.006186e-01	k: 365627	n:610000
ARID2   610000 perm   378 sec   (1613 perm/sec)   p_kst 5.993885e-01   p_cons 2.422951e-03   p_joint 1.470328e-02

Joint ci ratio: 4.009587e-02	ci left: 1.487775e-02	ci right 1.548808e-02	k: 9412	n:620000
Cons ci ratio: 1.008557e-01	ci left: 2.308026e-03	ci right 2.554724e-03	k: 1506	n:620000
KS ci ratio: 4.068833e-03	ci left: 5.983081e-01	ci right 6.007490e-01	k: 371708	n:620000
ARID2   620000 perm   387 sec   (1603 perm/sec)   p_kst 5.995290e-01   p_cons 2.429032e-03   p_joint 1.518065e-02

Joint ci ratio: 3.985435e-02	ci left: 1.482231e-02	ci right 1.542661e-02	k: 9527	n:630000
Cons ci ratio: 9.996401e-02	ci left: 2.313172e-03	ci right 2.558106e-03	k: 1533	n:630000
KS ci ratio: 4.036896e-03	ci left: 5.982602e-01	ci right 6.006817e-01	k: 377667	n:630000
ARID2   630000 perm   396 sec   (1591 perm/sec)   p_kst 5.994714e-01   p_cons 2.433333e-03   p_joint 1.512222e-02

Outputting figure to mutsig2_images.part000000000011/ARID2.16_5592_630000_0.59947_0.0024333_0.015122.png
                gene_name: ARID2
               theta_stop: 0.100 
                    nperm: 630000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0026 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.015 

Current progress: 7 percent done.
ARSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
ARSF   10000 perm   2 sec   (4561 perm/sec)   p_kst 1.999000e-01   p_cons 4.638000e-01   p_joint 3.048000e-01

Outputting figure to mutsig2_images.part000000000011/ARSF.12_1813_10000_0.1999_0.4638_0.3048.png
                gene_name: ARSF
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 9 percent done.
ARID4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
ARID4A   10000 perm   3 sec   (3937 perm/sec)   p_kst 4.369000e-01   p_cons 5.694000e-01   p_joint 6.334000e-01

Outputting figure to mutsig2_images.part000000000011/ARID4A.8_3866_10000_0.4369_0.5694_0.6334.png
                gene_name: ARID4A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 11 percent done.
ARID3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
ARID3C   10000 perm   2 sec   (5590 perm/sec)   p_kst 9.134000e-01   p_cons 6.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARID3C.7_1266_10000_0.9134_0.6091_1.png
                gene_name: ARID3C
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
ARSI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
ARSI   10000 perm   2 sec   (4373 perm/sec)   p_kst 4.935000e-01   p_cons 3.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARSI.7_1718_10000_0.4935_0.3109_1.png
                gene_name: ARSI
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ARID5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
Cons ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
KS ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
ARID5B   10000 perm   3 sec   (3208 perm/sec)   p_kst 1.883000e-01   p_cons 5.820000e-01   p_joint 4.403000e-01

Outputting figure to mutsig2_images.part000000000011/ARID5B.6_3607_10000_0.1883_0.582_0.4403.png
                gene_name: ARID5B
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
ARMC4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
ARMC4   10000 perm   2 sec   (4944 perm/sec)   p_kst 3.328000e-01   p_cons 4.533000e-01   p_joint 5.311000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC4.5_3211_10000_0.3328_0.4533_0.5311.png
                gene_name: ARMC4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
ARSJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
Cons ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
ARSJ   10000 perm   2 sec   (5452 perm/sec)   p_kst 2.810000e-02   p_cons 9.877000e-01   p_joint 7.060000e-02

Joint ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
Cons ci ratio: 3.015540e-03	ci left: 9.867647e-01	ci right 9.897908e-01	k: 19767	n:20000
KS ci ratio: 1.624178e-01	ci left: 2.599753e-02	ci right 3.064096e-02	k: 565	n:20000
ARSJ   20000 perm   4 sec   (4761 perm/sec)   p_kst 2.825000e-02   p_cons 9.883500e-01   p_joint 8.850000e-02

Joint ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
Cons ci ratio: 2.415723e-03	ci left: 9.875089e-01	ci right 9.899284e-01	k: 29663	n:30000
KS ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
ARSJ   30000 perm   7 sec   (4485 perm/sec)   p_kst 2.676667e-02   p_cons 9.887667e-01   p_joint 5.673333e-02

Joint ci ratio: 6.660198e-02	ci left: 7.703939e-02	ci right 8.237181e-02	k: 3187	n:40000
Cons ci ratio: 2.148521e-03	ci left: 9.870409e-01	ci right 9.891874e-01	k: 39526	n:40000
KS ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
ARSJ   40000 perm   9 sec   (4330 perm/sec)   p_kst 2.637500e-02   p_cons 9.881500e-01   p_joint 7.967500e-02

Joint ci ratio: 6.862486e-02	ci left: 5.915388e-02	ci right 6.337724e-02	k: 3062	n:50000
Cons ci ratio: 1.887446e-03	ci left: 9.875890e-01	ci right 9.894737e-01	k: 49428	n:50000
KS ci ratio: 1.078955e-01	ci left: 2.433059e-02	ci right 2.712484e-02	k: 1285	n:50000
ARSJ   50000 perm   12 sec   (4227 perm/sec)   p_kst 2.570000e-02   p_cons 9.885600e-01   p_joint 6.124000e-02

Joint ci ratio: 6.953708e-02	ci left: 4.854822e-02	ci right 5.206211e-02	k: 3017	n:60000
Cons ci ratio: 1.712076e-03	ci left: 9.878219e-01	ci right 9.895304e-01	k: 59322	n:60000
KS ci ratio: 9.876448e-02	ci left: 2.431837e-02	ci right 2.686113e-02	k: 1534	n:60000
ARSJ   60000 perm   15 sec   (4136 perm/sec)   p_kst 2.556667e-02   p_cons 9.887000e-01   p_joint 5.028333e-02

Outputting figure to mutsig2_images.part000000000011/ARSJ.6_1808_60000_0.025567_0.9887_0.050283.png
                gene_name: ARSJ
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 22 percent done.
ARSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
ARSG   10000 perm   2 sec   (5173 perm/sec)   p_kst 4.270000e-01   p_cons 2.130000e-02   p_joint 9.530000e-02

Joint ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
Cons ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
KS ci ratio: 3.205098e-02	ci left: 4.209789e-01	ci right 4.347421e-01	k: 8557	n:20000
ARSG   20000 perm   4 sec   (4613 perm/sec)   p_kst 4.278500e-01   p_cons 2.965000e-02   p_joint 1.344500e-01

Joint ci ratio: 6.216379e-02	ci left: 1.133834e-01	ci right 1.206909e-01	k: 3510	n:30000
Cons ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
KS ci ratio: 2.611958e-02	ci left: 4.231902e-01	ci right 4.344236e-01	k: 12864	n:30000
ARSG   30000 perm   7 sec   (4423 perm/sec)   p_kst 4.288000e-01   p_cons 3.000000e-02   p_joint 1.170000e-01

Joint ci ratio: 6.007592e-02	ci left: 9.330259e-02	ci right 9.910618e-02	k: 3847	n:40000
Cons ci ratio: 1.115449e-01	ci left: 2.827700e-02	ci right 3.164170e-02	k: 1197	n:40000
KS ci ratio: 2.265176e-02	ci left: 4.232688e-01	ci right 4.329916e-01	k: 17125	n:40000
ARSG   40000 perm   9 sec   (4282 perm/sec)   p_kst 4.281250e-01   p_cons 2.992500e-02   p_joint 9.617500e-02

Joint ci ratio: 5.459819e-02	ci left: 9.090255e-02	ci right 9.602476e-02	k: 4672	n:50000
Cons ci ratio: 1.009389e-01	ci left: 2.780014e-02	ci right 3.077485e-02	k: 1463	n:50000
KS ci ratio: 1.981043e-02	ci left: 4.348036e-01	ci right 4.435235e-01	k: 21958	n:50000
ARSG   50000 perm   12 sec   (4172 perm/sec)   p_kst 4.391600e-01   p_cons 2.926000e-02   p_joint 9.344000e-02

Joint ci ratio: 5.078889e-02	ci left: 8.801820e-02	ci right 9.262152e-02	k: 5418	n:60000
Cons ci ratio: 1.020894e-01	ci left: 2.275760e-02	ci right 2.522207e-02	k: 1438	n:60000
KS ci ratio: 1.808545e-02	ci left: 4.351570e-01	ci right 4.431155e-01	k: 26348	n:60000
ARSG   60000 perm   15 sec   (4075 perm/sec)   p_kst 4.391333e-01   p_cons 2.396667e-02   p_joint 9.030000e-02

Joint ci ratio: 5.073295e-02	ci left: 7.658853e-02	ci right 8.058934e-02	k: 5500	n:70000
Cons ci ratio: 8.903924e-02	ci left: 2.574191e-02	ci right 2.815466e-02	k: 1885	n:70000
KS ci ratio: 1.676063e-02	ci left: 4.349623e-01	ci right 4.423285e-01	k: 30705	n:70000
ARSG   70000 perm   18 sec   (3989 perm/sec)   p_kst 4.386429e-01   p_cons 2.692857e-02   p_joint 7.857143e-02

Outputting figure to mutsig2_images.part000000000011/ARSG.5_1622_70000_0.43864_0.026929_0.078571.png
                gene_name: ARSG
               theta_stop: 0.089 
                    nperm: 70000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 24 percent done.
ARMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
ARMC1   10000 perm   2 sec   (5690 perm/sec)   p_kst 5.595000e-01   p_cons 5.609000e-01   p_joint 5.591000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC1.4_873_10000_0.5595_0.5609_0.5591.png
                gene_name: ARMC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
ARMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
Cons ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
ARMC5   10000 perm   2 sec   (5314 perm/sec)   p_kst 1.919000e-01   p_cons 4.103000e-01   p_joint 2.665000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC5.4_3146_10000_0.1919_0.4103_0.2665.png
                gene_name: ARMC5
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 28 percent done.
ARMCX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
KS ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
ARMCX3   10000 perm   2 sec   (5814 perm/sec)   p_kst 7.970000e-01   p_cons 9.421000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARMCX3.4_1144_10000_0.797_0.9421_1.png
                gene_name: ARMCX3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ARMCX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
Cons ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
ARMCX5   10000 perm   2 sec   (5140 perm/sec)   p_kst 8.799000e-01   p_cons 4.981000e-01   p_joint 8.637000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX5.4_1681_10000_0.8799_0.4981_0.8637.png
                gene_name: ARMCX5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 33 percent done.
ARNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
ARNT2   10000 perm   2 sec   (5528 perm/sec)   p_kst 9.538000e-01   p_cons 5.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARNT2.4_2230_10000_0.9538_0.5452_1.png
                gene_name: ARNT2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ARR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
Cons ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
ARR3   10000 perm   2 sec   (6123 perm/sec)   p_kst 3.302000e-01   p_cons 5.280000e-02   p_joint 8.980000e-02

Joint ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 3.999682e-02	ci left: 3.179128e-01	ci right 3.309383e-01	k: 6488	n:20000
ARR3   20000 perm   4 sec   (5278 perm/sec)   p_kst 3.244000e-01   p_cons 5.025000e-02   p_joint 1.051500e-01

Joint ci ratio: 7.992279e-02	ci left: 7.125883e-02	ci right 7.722394e-02	k: 2226	n:30000
Cons ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
KS ci ratio: 3.305242e-02	ci left: 3.138928e-01	ci right 3.244756e-01	k: 9575	n:30000
ARR3   30000 perm   6 sec   (4926 perm/sec)   p_kst 3.191667e-01   p_cons 4.563333e-02   p_joint 7.420000e-02

Joint ci ratio: 6.241872e-02	ci left: 8.694169e-02	ci right 9.256803e-02	k: 3589	n:40000
Cons ci ratio: 8.641580e-02	ci left: 4.680689e-02	ci right 5.105890e-02	k: 1956	n:40000
KS ci ratio: 2.874985e-02	ci left: 3.127149e-01	ci right 3.218616e-01	k: 12691	n:40000
ARR3   40000 perm   8 sec   (4752 perm/sec)   p_kst 3.172750e-01   p_cons 4.890000e-02   p_joint 8.972500e-02

Outputting figure to mutsig2_images.part000000000011/ARR3.4_1231_40000_0.31727_0.0489_0.089725.png
                gene_name: ARR3
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 37 percent done.
ARSH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
KS ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
ARSH   10000 perm   2 sec   (5505 perm/sec)   p_kst 9.789000e-01   p_cons 3.632000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARSH.4_1724_10000_0.9789_0.3632_1.png
                gene_name: ARSH
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ARID3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
Cons ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
ARID3B   10000 perm   2 sec   (5878 perm/sec)   p_kst 6.626000e-01   p_cons 1.007000e-01   p_joint 5.067000e-01

Joint ci ratio: 5.066631e-02	ci left: 2.244795e-01	ci right 2.361990e-01	k: 4606	n:20000
Cons ci ratio: 7.992864e-02	ci left: 1.030430e-01	ci right 1.116715e-01	k: 2146	n:20000
KS ci ratio: 1.883963e-02	ci left: 6.775054e-01	ci right 6.904411e-01	k: 13680	n:20000
ARID3B   20000 perm   4 sec   (5148 perm/sec)   p_kst 6.840000e-01   p_cons 1.073000e-01   p_joint 2.303000e-01

Outputting figure to mutsig2_images.part000000000011/ARID3B.3_1715_20000_0.684_0.1073_0.2303.png
                gene_name: ARID3B
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 41 percent done.
ARID4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
ARID4B   10000 perm   2 sec   (4617 perm/sec)   p_kst 5.183000e-01   p_cons 6.692000e-01   p_joint 9.921000e-01

Outputting figure to mutsig2_images.part000000000011/ARID4B.3_4031_10000_0.5183_0.6692_0.9921.png
                gene_name: ARID4B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 43 percent done.
ARL13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
Cons ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
KS ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
ARL13B   10000 perm   2 sec   (6157 perm/sec)   p_kst 4.151000e-01   p_cons 3.023000e-01   p_joint 6.047000e-01

Outputting figure to mutsig2_images.part000000000011/ARL13B.3_1327_10000_0.4151_0.3023_0.6047.png
                gene_name: ARL13B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 46 percent done.
ARL4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
Cons ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
KS ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
ARL4D   10000 perm   2 sec   (6626 perm/sec)   p_kst 5.672000e-01   p_cons 2.809000e-01   p_joint 5.796000e-01

Outputting figure to mutsig2_images.part000000000011/ARL4D.3_610_10000_0.5672_0.2809_0.5796.png
                gene_name: ARL4D
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 48 percent done.
ARMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.132144e-02	ci left: 7.633448e-01	ci right 7.798966e-01	k: 7717	n:10000
KS ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
ARMC2   10000 perm   2 sec   (5228 perm/sec)   p_kst 7.029000e-01   p_cons 7.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARMC2.3_2672_10000_0.7029_0.7717_1.png
                gene_name: ARMC2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ARRDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
ARRDC4   10000 perm   2 sec   (5883 perm/sec)   p_kst 7.320000e-02   p_cons 5.560000e-01   p_joint 1.475000e-01

Joint ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
Cons ci ratio: 2.403436e-02	ci left: 5.639054e-01	ci right 5.776740e-01	k: 11416	n:20000
KS ci ratio: 9.870057e-02	ci left: 6.948088e-02	ci right 7.674382e-02	k: 1461	n:20000
ARRDC4   20000 perm   4 sec   (5141 perm/sec)   p_kst 7.305000e-02   p_cons 5.708000e-01   p_joint 1.095500e-01

Outputting figure to mutsig2_images.part000000000011/ARRDC4.3_1289_20000_0.07305_0.5708_0.10955.png
                gene_name: ARRDC4
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
ARSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
Cons ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
KS ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
ARSD   10000 perm   2 sec   (5464 perm/sec)   p_kst 2.396000e-01   p_cons 1.944000e-01   p_joint 3.041000e-01

Outputting figure to mutsig2_images.part000000000011/ARSD.3_1975_10000_0.2396_0.1944_0.3041.png
                gene_name: ARSD
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 54 percent done.
ART5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
Cons ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
KS ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
ART5   10000 perm   2 sec   (6171 perm/sec)   p_kst 2.677000e-01   p_cons 1.744000e-01   p_joint 3.495000e-01

Outputting figure to mutsig2_images.part000000000011/ART5.3_892_10000_0.2677_0.1744_0.3495.png
                gene_name: ART5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 57 percent done.
ARID5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
ARID5A   10000 perm   2 sec   (6223 perm/sec)   p_kst 1.365000e-01   p_cons 6.016000e-01   p_joint 1.895000e-01

Outputting figure to mutsig2_images.part000000000011/ARID5A.2_1813_10000_0.1365_0.6016_0.1895.png
                gene_name: ARID5A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 59 percent done.
ARIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
ARIH1   10000 perm   2 sec   (6014 perm/sec)   p_kst 1.781000e-01   p_cons 2.644000e-01   p_joint 2.610000e-01

Outputting figure to mutsig2_images.part000000000011/ARIH1.2_1730_10000_0.1781_0.2644_0.261.png
                gene_name: ARIH1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 61 percent done.
ARL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
KS ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
ARL15   10000 perm   1 sec   (6677 perm/sec)   p_kst 4.972000e-01   p_cons 9.940000e-02   p_joint 8.611000e-01

Joint ci ratio: 1.074412e-02	ci left: 8.646513e-01	ci right 8.740410e-01	k: 17388	n:20000
Cons ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
KS ci ratio: 2.804829e-02	ci left: 4.870973e-01	ci right 5.010045e-01	k: 9881	n:20000
ARL15   20000 perm   3 sec   (5774 perm/sec)   p_kst 4.940500e-01   p_cons 9.840000e-02   p_joint 8.694000e-01

Outputting figure to mutsig2_images.part000000000011/ARL15.2_635_20000_0.49405_0.0984_0.8694.png
                gene_name: ARL15
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 63 percent done.
ARL16
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 65 percent done.
ARL4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.295165e-02	ci left: 5.761720e-01	ci right 5.955779e-01	k: 5859	n:10000
KS ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
ARL4A   10000 perm   2 sec   (5793 perm/sec)   p_kst 9.634000e-01   p_cons 5.859000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARL4A.2_607_10000_0.9634_0.5859_1.png
                gene_name: ARL4A
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ARMC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.218655e-03	ci left: 9.916107e-01	ci right 9.948920e-01	k: 9934	n:10000
Cons ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
KS ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
ARMC9   10000 perm   2 sec   (4859 perm/sec)   p_kst 9.541000e-01   p_cons 6.038000e-01   p_joint 9.934000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC9.2_2078_10000_0.9541_0.6038_0.9934.png
                gene_name: ARMC9
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 70 percent done.
ARMCX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
ARMCX1   10000 perm   2 sec   (6198 perm/sec)   p_kst 5.790000e-02   p_cons 4.675000e-01   p_joint 1.072000e-01

Joint ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
Cons ci ratio: 2.900752e-02	ci left: 4.703064e-01	ci right 4.842002e-01	k: 9545	n:20000
KS ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
ARMCX1   20000 perm   4 sec   (5389 perm/sec)   p_kst 5.760000e-02   p_cons 4.772500e-01   p_joint 1.051500e-01

Joint ci ratio: 8.667064e-02	ci left: 6.106012e-02	ci right 6.662471e-02	k: 1914	n:30000
Cons ci ratio: 2.376998e-02	ci left: 4.698015e-01	ci right 4.811366e-01	k: 14264	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
ARMCX1   30000 perm   6 sec   (5097 perm/sec)   p_kst 5.750000e-02   p_cons 4.754667e-01   p_joint 6.380000e-02

Outputting figure to mutsig2_images.part000000000011/ARMCX1.2_1366_30000_0.0575_0.47547_0.0638.png
                gene_name: ARMCX1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 72 percent done.
ARMCX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.000918e-03	ci left: 9.963117e-01	ci right 9.983815e-01	k: 9975	n:10000
Cons ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
KS ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
ARMCX2   10000 perm   2 sec   (5851 perm/sec)   p_kst 9.528000e-01   p_cons 2.882000e-01   p_joint 9.975000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX2.2_1903_10000_0.9528_0.2882_0.9975.png
                gene_name: ARMCX2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 74 percent done.
ARNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
Cons ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
ARNT   10000 perm   2 sec   (5537 perm/sec)   p_kst 3.787000e-01   p_cons 1.393000e-01   p_joint 6.684000e-01

Outputting figure to mutsig2_images.part000000000011/ARNT.2_2458_10000_0.3787_0.1393_0.6684.png
                gene_name: ARNT
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 76 percent done.
ARNTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
Cons ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
KS ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
ARNTL   10000 perm   2 sec   (5864 perm/sec)   p_kst 6.573000e-01   p_cons 6.806000e-01   p_joint 9.932000e-01

Outputting figure to mutsig2_images.part000000000011/ARNTL.2_1957_10000_0.6573_0.6806_0.9932.png
                gene_name: ARNTL
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 78 percent done.
ARPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
ARPC3   10000 perm   1 sec   (6809 perm/sec)   p_kst 6.759000e-01   p_cons 1.249000e-01   p_joint 5.546000e-01

Joint ci ratio: 2.221362e-02	ci left: 6.020964e-01	ci right 6.156719e-01	k: 12178	n:20000
Cons ci ratio: 7.479556e-02	ci left: 1.162154e-01	ci right 1.252952e-01	k: 2414	n:20000
KS ci ratio: 1.932066e-02	ci left: 6.664487e-01	ci right 6.795010e-01	k: 13460	n:20000
ARPC3   20000 perm   3 sec   (5855 perm/sec)   p_kst 6.730000e-01   p_cons 1.207000e-01   p_joint 6.089000e-01

Outputting figure to mutsig2_images.part000000000011/ARPC3.2_565_20000_0.673_0.1207_0.6089.png
                gene_name: ARPC3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 80 percent done.
ARPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
ARPM1   10000 perm   1 sec   (6726 perm/sec)   p_kst 9.062000e-01   p_cons 5.800000e-02   p_joint 3.137000e-01

Joint ci ratio: 4.281417e-02	ci left: 2.889829e-01	ci right 3.016766e-01	k: 5906	n:20000
Cons ci ratio: 1.122713e-01	ci left: 5.421584e-02	ci right 6.071357e-02	k: 1148	n:20000
KS ci ratio: 8.739883e-03	ci left: 9.055411e-01	ci right 9.135394e-01	k: 18192	n:20000
ARPM1   20000 perm   3 sec   (5788 perm/sec)   p_kst 9.096000e-01   p_cons 5.740000e-02   p_joint 2.953000e-01

Joint ci ratio: 6.111115e-03	ci left: 9.291605e-01	ci right 9.348888e-01	k: 27962	n:30000
Cons ci ratio: 9.140284e-02	ci left: 5.512030e-02	ci right 6.043241e-02	k: 1732	n:30000
KS ci ratio: 7.111065e-03	ci left: 9.068745e-01	ci right 9.133792e-01	k: 27305	n:30000
ARPM1   30000 perm   6 sec   (5438 perm/sec)   p_kst 9.101667e-01   p_cons 5.773333e-02   p_joint 9.320667e-01

Outputting figure to mutsig2_images.part000000000011/ARPM1.2_1127_30000_0.91017_0.057733_0.93207.png
                gene_name: ARPM1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.93 

Current progress: 83 percent done.
ARRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
KS ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
ARRB1   10000 perm   2 sec   (6256 perm/sec)   p_kst 6.978000e-01   p_cons 5.918000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000011/ARRB1.2_1321_10000_0.6978_0.5918_0.8588.png
                gene_name: ARRB1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 85 percent done.
ARRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
Cons ci ratio: 7.674665e-02	ci left: 1.988982e-01	ci right 2.148729e-01	k: 2068	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
ARRB2   10000 perm   2 sec   (6335 perm/sec)   p_kst 5.935000e-01   p_cons 2.068000e-01   p_joint 6.899000e-01

Outputting figure to mutsig2_images.part000000000011/ARRB2.2_1290_10000_0.5935_0.2068_0.6899.png
                gene_name: ARRB2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 87 percent done.
ARRDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
Cons ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
KS ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
ARRDC2   10000 perm   2 sec   (6451 perm/sec)   p_kst 4.050000e-01   p_cons 3.397000e-01   p_joint 3.910000e-01

Outputting figure to mutsig2_images.part000000000011/ARRDC2.2_1519_10000_0.405_0.3397_0.391.png
                gene_name: ARRDC2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 89 percent done.
ARRDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
KS ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
ARRDC3   10000 perm   2 sec   (6234 perm/sec)   p_kst 3.901000e-01   p_cons 2.150000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARRDC3.2_1277_10000_0.3901_0.215_1.png
                gene_name: ARRDC3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ARRDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 3.442662e-02	ci left: 5.547144e-01	ci right 5.742480e-01	k: 5645	n:10000
ARRDC5   10000 perm   2 sec   (6437 perm/sec)   p_kst 5.645000e-01   p_cons 5.719000e-01   p_joint 8.224000e-01

Outputting figure to mutsig2_images.part000000000011/ARRDC5.2_1041_10000_0.5645_0.5719_0.8224.png
                gene_name: ARRDC5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 93 percent done.
ARSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
ARSK   10000 perm   2 sec   (6373 perm/sec)   p_kst 4.513000e-01   p_cons 7.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARSK.2_1643_10000_0.4513_0.7137_1.png
                gene_name: ARSK
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ART3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
ART3   10000 perm   2 sec   (6352 perm/sec)   p_kst 8.840000e-02   p_cons 6.376000e-01   p_joint 3.063000e-01

Joint ci ratio: 4.961075e-02	ci left: 2.319627e-01	ci right 2.438136e-01	k: 4757	n:20000
Cons ci ratio: 2.197649e-02	ci left: 6.072118e-01	ci right 6.207550e-01	k: 12280	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
ART3   20000 perm   4 sec   (5530 perm/sec)   p_kst 9.130000e-02   p_cons 6.140000e-01   p_joint 2.378500e-01

Outputting figure to mutsig2_images.part000000000011/ART3.2_1214_20000_0.0913_0.614_0.23785.png
                gene_name: ART3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
ART4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.770819e-02	ci left: 6.574640e-01	ci right 6.760388e-01	k: 6668	n:10000
Cons ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
ART4   10000 perm   2 sec   (6489 perm/sec)   p_kst 1.950000e-01   p_cons 8.991000e-01   p_joint 6.668000e-01

Outputting figure to mutsig2_images.part000000000011/ART4.2_957_10000_0.195_0.8991_0.6668.png
                gene_name: ART4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000011
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 11 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1654>
Subject: Job 4421716: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1654>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000012> was used as the working directory.
Started at Wed Oct 24 17:30:21 2012
Results reported at Wed Oct 24 20:51:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000012.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000012.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 12  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000012.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12249.41 sec.
    Max Memory :      5250 MB
    Max Swap   :      7881 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
12
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 12
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 12: processing genes 996 - 1086
Calculating significance of each gene.
Using projection method.
996	ASAH1	9.426185e-01
997	ASAH2	1.405826e-01
998	ASAM	3.503120e-01
999	ASAP1	4.650977e-02
1000/18094 1000	ASAP2	8.601747e-01
1001	ASAP3	9.329682e-01
1002	ASB1	1
1003	ASB10	8.625740e-01
1004	ASB11	5.079631e-01
1005	ASB12	1
1006	ASB13	1
1007	ASB14	6.955025e-01
1008	ASB15	9.097303e-01
1009	ASB16	9.033228e-01
1010	ASB17	3.360900e-02
1011	ASB18	2.778265e-01
1012	ASB2	4.750479e-01
1013	ASB3	9.004470e-01
1014	ASB4	9.288277e-01
1015	ASB5	4.417891e-01
1016	ASB6	1
1017	ASB7	4.733763e-01
1018	ASB8	7.944882e-01
1019	ASB9	5.318046e-01
1020	ASCC1	1
1021	ASCC2	8.798732e-01
1022	ASCC3	9.997191e-01
1023	ASCL1	1
1024	ASCL3	8.567286e-03
1025	ASCL4	3.611421e-01
1026	ASF1A	1
1027	ASF1B	1
1028	ASGR1	1
1029	ASGR2	5.042959e-01
1030	ASH1L	9.999220e-01
1031	ASH2L	1
1032	ASIP	1
1033	ASL	8.731428e-01
1034	ASMT	1.619751e-01
1035	ASMTL	6.139257e-01
1036	ASNA1	6.469824e-01
1037	ASNS	1
1038	ASNSD1	1
1039	ASPA	3.921463e-01
1040	ASPDH	1
1041	ASPG	8.617307e-01
1042	ASPH	9.890445e-01
1043	ASPHD1	8.504524e-01
1044	ASPHD2	6.798911e-01
1045	ASPM	9.999849e-01
1046	ASPN	1
1047	ASPRV1	4.477429e-01
1048	ASPSCR1	1
1049	ASRGL1	1
1050	ASS1	6.698906e-01
1051	ASTE1	9.857781e-01
1052	ASTL	2.932331e-02
1053	ASTN1	6.051228e-02
1054	ASTN2	3.800993e-01
1055	ASXL1	9.891914e-01
1056	ASXL2	8.292416e-01
1057	ASXL3	1
1058	ASZ1	6.821117e-02
1059	ATAD1	1
1060	ATAD2	2.080932e-01
1061	ATAD2B	8.587449e-01
1062	ATAD3A	8.720366e-01
1063	ATAD3B	9.657404e-01
1064	ATAD3C	1
1065	ATAD5	9.985439e-01
1066	ATCAY	1
1067	ATE1	1
1068	ATF1	1
1069	ATF2	8.830257e-02
1070	ATF3	1
1071	ATF4	6.934288e-01
1072	ATF5	1
1073	ATF6	7.810387e-01
1074	ATF6B	4.293362e-01
1075	ATF7	9.231053e-01
1076	ATF7IP	9.980064e-01
1077	ATF7IP2	1
1078	ATG10	3.712089e-01
1079	ATG12	1
1080	ATG16L1	7.865065e-01
1081	ATG16L2	7.375053e-01
1082	ATG2A	9.964521e-01
1083	ATG2B	9.999701e-01
In gene ATG3 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 993     n = 1	mu =   7.03e-07
1084	ATG3	1.499464e-01
1085	ATG4A	4.458852e-01
1086	ATG4B	7.325335e-01
Done

Running MutSig 2:
Scatter job 12: processing genes 996 - 1086
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ASPM
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
Cons ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
KS ci ratio: 9.988650e-03	ci left: 9.342335e-01	ci right 9.437088e-01	k: 9391	n:10000
ASPM   10000 perm   3 sec   (2874 perm/sec)   p_kst 9.391000e-01   p_cons 4.438000e-01   p_joint 8.546000e-01

Outputting figure to mutsig2_images.part000000000012/ASPM.38_10546_10000_0.9391_0.4438_0.8546.png
                gene_name: ASPM
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 2 percent done.
ASTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
ASTN1   10000 perm   3 sec   (3764 perm/sec)   p_kst 4.902000e-01   p_cons 5.290000e-02   p_joint 1.519000e-01

Joint ci ratio: 5.728680e-02	ci left: 1.842373e-01	ci right 1.951530e-01	k: 3793	n:20000
Cons ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
KS ci ratio: 2.800344e-02	ci left: 4.878970e-01	ci right 5.018045e-01	k: 9897	n:20000
ASTN1   20000 perm   6 sec   (3466 perm/sec)   p_kst 4.948500e-01   p_cons 6.175000e-02   p_joint 1.896500e-01

Joint ci ratio: 5.168325e-02	ci left: 1.567254e-01	ci right 1.650737e-01	k: 4826	n:30000
Cons ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
KS ci ratio: 2.267782e-02	ci left: 4.932924e-01	ci right 5.046411e-01	k: 14969	n:30000
ASTN1   30000 perm   9 sec   (3358 perm/sec)   p_kst 4.989667e-01   p_cons 6.026667e-02   p_joint 1.608667e-01

Outputting figure to mutsig2_images.part000000000012/ASTN1.38_3981_30000_0.49897_0.060267_0.16087.png
                gene_name: ASTN1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 4 percent done.
ASTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
ASTN2   10000 perm   3 sec   (3976 perm/sec)   p_kst 1.000000e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
ASTN2   20000 perm   6 sec   (3619 perm/sec)   p_kst 5.000000e-05   p_cons 3.500000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
ASTN2   30000 perm   9 sec   (3497 perm/sec)   p_kst 3.333333e-05   p_cons 2.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
ASTN2   40000 perm   12 sec   (3427 perm/sec)   p_kst 2.500000e-05   p_cons 3.500000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
ASTN2   50000 perm   15 sec   (3371 perm/sec)   p_kst 2.000000e-05   p_cons 2.800000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
ASTN2   60000 perm   18 sec   (3321 perm/sec)   p_kst 1.666667e-05   p_cons 3.333333e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 7.838544e-01	ci left: 2.196870e-04	ci right 5.101016e-04	k: 24	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
ASTN2   70000 perm   21 sec   (3268 perm/sec)   p_kst 1.428571e-05   p_cons 3.428571e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
ASTN2   80000 perm   25 sec   (3219 perm/sec)   p_kst 1.250000e-05   p_cons 3.250000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 7.406910e-01	ci left: 1.977109e-04	ci right 4.364545e-04	k: 27	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
ASTN2   90000 perm   28 sec   (3171 perm/sec)   p_kst 1.111111e-05   p_cons 3.000000e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 7.155799e-01	ci left: 1.942259e-04	ci right 4.164620e-04	k: 29	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
ASTN2   100000 perm   32 sec   (3129 perm/sec)   p_kst 1.000000e-05   p_cons 2.900000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
ASTN2   110000 perm   36 sec   (3087 perm/sec)   p_kst 9.090909e-06   p_cons 3.363636e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 5.842471e-01	ci left: 2.664328e-04	ci right 4.922020e-04	k: 44	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
ASTN2   120000 perm   39 sec   (3051 perm/sec)   p_kst 8.333333e-06   p_cons 3.666667e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 5.716852e-01	ci left: 2.590711e-04	ci right 4.719533e-04	k: 46	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
ASTN2   130000 perm   43 sec   (3018 perm/sec)   p_kst 7.692308e-06   p_cons 3.538462e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 5.599000e-01	ci left: 2.528063e-04	ci right 4.545534e-04	k: 48	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
ASTN2   140000 perm   47 sec   (2985 perm/sec)   p_kst 7.142857e-06   p_cons 3.428571e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 5.284740e-01	ci left: 2.704543e-04	ci right 4.696961e-04	k: 54	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
ASTN2   150000 perm   51 sec   (2952 perm/sec)   p_kst 6.666667e-06   p_cons 3.600000e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 4.977425e-01	ci left: 2.916382e-04	ci right 4.897050e-04	k: 61	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
ASTN2   160000 perm   55 sec   (2918 perm/sec)   p_kst 6.250000e-06   p_cons 3.812500e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 4.788084e-01	ci left: 3.002735e-04	ci right 4.939044e-04	k: 66	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
ASTN2   170000 perm   59 sec   (2885 perm/sec)   p_kst 5.882353e-06   p_cons 3.882353e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 4.752787e-01	ci left: 2.884784e-04	ci right 4.726853e-04	k: 67	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
ASTN2   180000 perm   63 sec   (2852 perm/sec)   p_kst 5.555556e-06   p_cons 3.722222e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 4.495637e-01	ci left: 3.104978e-04	ci right 4.947813e-04	k: 75	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
ASTN2   190000 perm   67 sec   (2822 perm/sec)   p_kst 5.263158e-06   p_cons 3.947368e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 4.301855e-01	ci left: 3.260980e-04	ci right 5.088929e-04	k: 82	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
ASTN2   200000 perm   72 sec   (2792 perm/sec)   p_kst 5.000000e-06   p_cons 4.100000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 4.226169e-01	ci left: 3.233218e-04	ci right 5.004704e-04	k: 85	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
ASTN2   210000 perm   76 sec   (2763 perm/sec)   p_kst 4.761905e-06   p_cons 4.047619e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 4.131188e-01	ci left: 3.248954e-04	ci right 4.978048e-04	k: 89	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
ASTN2   220000 perm   80 sec   (2734 perm/sec)   p_kst 4.545455e-06   p_cons 4.045455e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.999990e-01	ci left: 3.341893e-04	ci right 5.049010e-04	k: 95	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
ASTN2   230000 perm   85 sec   (2705 perm/sec)   p_kst 4.347826e-06   p_cons 4.130435e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.899717e-01	ci left: 3.390291e-04	ci right 5.067555e-04	k: 100	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
ASTN2   240000 perm   90 sec   (2677 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.861687e-01	ci left: 3.326871e-04	ci right 4.952625e-04	k: 102	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
ASTN2   250000 perm   94 sec   (2649 perm/sec)   p_kst 4.000000e-06   p_cons 4.080000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.788820e-01	ci left: 3.337968e-04	ci right 4.930710e-04	k: 106	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
ASTN2   260000 perm   99 sec   (2623 perm/sec)   p_kst 3.846154e-06   p_cons 4.076923e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.686847e-01	ci left: 3.415691e-04	ci right 4.991090e-04	k: 112	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
ASTN2   270000 perm   104 sec   (2596 perm/sec)   p_kst 3.703704e-06   p_cons 4.148148e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.577681e-01	ci left: 3.520895e-04	ci right 5.085546e-04	k: 119	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
ASTN2   280000 perm   109 sec   (2571 perm/sec)   p_kst 3.571429e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 3.533789e-01	ci left: 3.493692e-04	ci right 5.022835e-04	k: 122	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
ASTN2   290000 perm   114 sec   (2545 perm/sec)   p_kst 3.448276e-06   p_cons 4.206897e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 3.437317e-01	ci left: 3.590149e-04	ci right 5.109080e-04	k: 129	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
ASTN2   300000 perm   119 sec   (2519 perm/sec)   p_kst 3.333333e-06   p_cons 4.300000e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 3.398336e-01	ci left: 3.562806e-04	ci right 5.049321e-04	k: 132	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
ASTN2   310000 perm   124 sec   (2495 perm/sec)   p_kst 3.225806e-06   p_cons 4.258065e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
ASTN2   320000 perm   130 sec   (2471 perm/sec)   p_kst 3.125000e-06   p_cons 4.343750e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 3.265949e-01	ci left: 3.652339e-04	ci right 5.104407e-04	k: 143	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
ASTN2   330000 perm   135 sec   (2446 perm/sec)   p_kst 3.030303e-06   p_cons 4.333333e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 3.254684e-01	ci left: 3.571920e-04	ci right 4.986093e-04	k: 144	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
ASTN2   340000 perm   140 sec   (2424 perm/sec)   p_kst 2.941176e-06   p_cons 4.235294e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 3.221534e-01	ci left: 3.548612e-04	ci right 4.936292e-04	k: 147	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
ASTN2   350000 perm   146 sec   (2402 perm/sec)   p_kst 2.857143e-06   p_cons 4.200000e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 3.158146e-01	ci left: 3.603366e-04	ci right 4.979135e-04	k: 153	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
ASTN2   360000 perm   151 sec   (2380 perm/sec)   p_kst 2.777778e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 3.117914e-01	ci left: 3.605574e-04	ci right 4.961158e-04	k: 157	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
ASTN2   370000 perm   157 sec   (2358 perm/sec)   p_kst 2.702703e-06   p_cons 4.243243e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 3.079182e-01	ci left: 3.607770e-04	ci right 4.944023e-04	k: 161	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
ASTN2   380000 perm   163 sec   (2336 perm/sec)   p_kst 2.631579e-06   p_cons 4.236842e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 3.023690e-01	ci left: 3.657333e-04	ci right 4.982839e-04	k: 167	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
ASTN2   390000 perm   168 sec   (2315 perm/sec)   p_kst 2.564103e-06   p_cons 4.282051e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.997054e-01	ci left: 3.635235e-04	ci right 4.938917e-04	k: 170	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
ASTN2   400000 perm   174 sec   (2294 perm/sec)   p_kst 2.500000e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.962605e-01	ci left: 3.636840e-04	ci right 4.923288e-04	k: 174	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
ASTN2   410000 perm   180 sec   (2274 perm/sec)   p_kst 2.439024e-06   p_cons 4.243902e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.937538e-01	ci left: 3.616391e-04	ci right 4.882767e-04	k: 177	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
ASTN2   420000 perm   186 sec   (2255 perm/sec)   p_kst 2.380952e-06   p_cons 4.214286e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.921180e-01	ci left: 3.575382e-04	ci right 4.819136e-04	k: 179	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
ASTN2   430000 perm   192 sec   (2236 perm/sec)   p_kst 2.325581e-06   p_cons 4.162791e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.881432e-01	ci left: 3.599492e-04	ci right 4.831492e-04	k: 184	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
ASTN2   440000 perm   198 sec   (2217 perm/sec)   p_kst 2.272727e-06   p_cons 4.181818e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.843263e-01	ci left: 3.622639e-04	ci right 4.843190e-04	k: 189	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
ASTN2   450000 perm   205 sec   (2199 perm/sec)   p_kst 2.222222e-06   p_cons 4.200000e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.821083e-01	ci left: 3.604471e-04	ci right 4.807742e-04	k: 192	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
ASTN2   460000 perm   211 sec   (2181 perm/sec)   p_kst 2.173913e-06   p_cons 4.173913e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.799413e-01	ci left: 3.587112e-04	ci right 4.773766e-04	k: 195	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
ASTN2   470000 perm   217 sec   (2163 perm/sec)   p_kst 2.127660e-06   p_cons 4.148936e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.757519e-01	ci left: 3.628674e-04	ci right 4.807998e-04	k: 201	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
ASTN2   480000 perm   224 sec   (2146 perm/sec)   p_kst 2.083333e-06   p_cons 4.187500e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.710940e-01	ci left: 3.687685e-04	ci right 4.862499e-04	k: 208	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
ASTN2   490000 perm   230 sec   (2129 perm/sec)   p_kst 2.040816e-06   p_cons 4.244898e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.704486e-01	ci left: 3.632573e-04	ci right 4.786606e-04	k: 209	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
ASTN2   500000 perm   237 sec   (2112 perm/sec)   p_kst 2.000000e-06   p_cons 4.180000e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.685376e-01	ci left: 3.616195e-04	ci right 4.755540e-04	k: 212	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
ASTN2   510000 perm   243 sec   (2096 perm/sec)   p_kst 1.960784e-06   p_cons 4.156863e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.630368e-01	ci left: 3.708202e-04	ci right 4.848665e-04	k: 221	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
ASTN2   520000 perm   250 sec   (2078 perm/sec)   p_kst 1.923077e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.618604e-01	ci left: 3.673488e-04	ci right 4.797395e-04	k: 223	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
ASTN2   530000 perm   257 sec   (2061 perm/sec)   p_kst 1.886792e-06   p_cons 4.207547e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.589857e-01	ci left: 3.692010e-04	ci right 4.807177e-04	k: 228	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
ASTN2   540000 perm   264 sec   (2045 perm/sec)   p_kst 1.851852e-06   p_cons 4.222222e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.578627e-01	ci left: 3.658890e-04	ci right 4.758489e-04	k: 230	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
ASTN2   550000 perm   271 sec   (2029 perm/sec)   p_kst 1.818182e-06   p_cons 4.181818e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.535094e-01	ci left: 3.727258e-04	ci right 4.825505e-04	k: 238	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
ASTN2   560000 perm   278 sec   (2014 perm/sec)   p_kst 1.785714e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.503856e-01	ci left: 3.760485e-04	ci right 4.852742e-04	k: 244	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
ASTN2   570000 perm   285 sec   (1998 perm/sec)   p_kst 1.754386e-06   p_cons 4.280702e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.488668e-01	ci left: 3.744137e-04	ci right 4.824028e-04	k: 247	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
ASTN2   580000 perm   293 sec   (1983 perm/sec)   p_kst 1.724138e-06   p_cons 4.258621e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.468838e-01	ci left: 3.744263e-04	ci right 4.814264e-04	k: 251	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
ASTN2   590000 perm   300 sec   (1968 perm/sec)   p_kst 1.694915e-06   p_cons 4.254237e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.439959e-01	ci left: 3.775709e-04	ci right 4.840163e-04	k: 257	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
ASTN2   600000 perm   307 sec   (1953 perm/sec)   p_kst 1.666667e-06   p_cons 4.283333e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.416652e-01	ci left: 3.790793e-04	ci right 4.847761e-04	k: 262	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
ASTN2   610000 perm   315 sec   (1939 perm/sec)   p_kst 1.639344e-06   p_cons 4.295082e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.398482e-01	ci left: 3.790275e-04	ci right 4.837972e-04	k: 266	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
ASTN2   620000 perm   322 sec   (1924 perm/sec)   p_kst 1.612903e-06   p_cons 4.290323e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.376334e-01	ci left: 3.804731e-04	ci right 4.845282e-04	k: 271	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
ASTN2   630000 perm   330 sec   (1910 perm/sec)   p_kst 1.587302e-06   p_cons 4.301587e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.371984e-01	ci left: 3.759976e-04	ci right 4.786128e-04	k: 272	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
ASTN2   640000 perm   338 sec   (1896 perm/sec)   p_kst 1.562500e-06   p_cons 4.250000e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.333818e-01	ci left: 3.832432e-04	ci right 4.859102e-04	k: 281	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
ASTN2   650000 perm   345 sec   (1882 perm/sec)   p_kst 1.538462e-06   p_cons 4.323077e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.313398e-01	ci left: 3.845713e-04	ci right 4.865638e-04	k: 286	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
ASTN2   660000 perm   353 sec   (1869 perm/sec)   p_kst 1.515152e-06   p_cons 4.333333e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.293505e-01	ci left: 3.858636e-04	ci right 4.871942e-04	k: 291	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
ASTN2   670000 perm   361 sec   (1855 perm/sec)   p_kst 1.492537e-06   p_cons 4.343284e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.266494e-01	ci left: 3.898954e-04	ci right 4.909105e-04	k: 298	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
ASTN2   680000 perm   369 sec   (1842 perm/sec)   p_kst 1.470588e-06   p_cons 4.382353e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.258956e-01	ci left: 3.869789e-04	ci right 4.868585e-04	k: 300	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
ASTN2   690000 perm   377 sec   (1829 perm/sec)   p_kst 1.449275e-06   p_cons 4.347826e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.247784e-01	ci left: 3.854944e-04	ci right 4.844307e-04	k: 303	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
ASTN2   700000 perm   385 sec   (1816 perm/sec)   p_kst 1.428571e-06   p_cons 4.328571e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.222340e-01	ci left: 3.893723e-04	ci right 4.880178e-04	k: 310	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
ASTN2   710000 perm   394 sec   (1802 perm/sec)   p_kst 1.408451e-06   p_cons 4.366197e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.211700e-01	ci left: 3.878996e-04	ci right 4.856375e-04	k: 313	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
ASTN2   720000 perm   402 sec   (1789 perm/sec)   p_kst 1.388889e-06   p_cons 4.347222e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.204693e-01	ci left: 3.851740e-04	ci right 4.818760e-04	k: 315	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
ASTN2   730000 perm   411 sec   (1777 perm/sec)   p_kst 1.369863e-06   p_cons 4.315068e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.184054e-01	ci left: 3.876315e-04	ci right 4.839171e-04	k: 321	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
ASTN2   740000 perm   419 sec   (1764 perm/sec)   p_kst 1.351351e-06   p_cons 4.337838e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.167291e-01	ci left: 3.887665e-04	ci right 4.844943e-04	k: 326	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
ASTN2   750000 perm   428 sec   (1752 perm/sec)   p_kst 1.333333e-06   p_cons 4.346667e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.154156e-01	ci left: 3.886295e-04	ci right 4.836669e-04	k: 330	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
ASTN2   760000 perm   437 sec   (1740 perm/sec)   p_kst 1.315789e-06   p_cons 4.342105e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.138067e-01	ci left: 3.897269e-04	ci right 4.842275e-04	k: 335	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
ASTN2   770000 perm   445 sec   (1729 perm/sec)   p_kst 1.298701e-06   p_cons 4.350649e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.122334e-01	ci left: 3.907987e-04	ci right 4.847711e-04	k: 340	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
ASTN2   780000 perm   454 sec   (1717 perm/sec)   p_kst 1.282051e-06   p_cons 4.358974e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.119233e-01	ci left: 3.870504e-04	ci right 4.799678e-04	k: 341	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
ASTN2   790000 perm   463 sec   (1706 perm/sec)   p_kst 1.265823e-06   p_cons 4.316456e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.106948e-01	ci left: 3.869477e-04	ci right 4.792324e-04	k: 345	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
ASTN2   800000 perm   472 sec   (1695 perm/sec)   p_kst 1.250000e-06   p_cons 4.312500e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.100888e-01	ci left: 3.845096e-04	ci right 4.759151e-04	k: 347	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
ASTN2   810000 perm   481 sec   (1684 perm/sec)   p_kst 1.234568e-06   p_cons 4.283951e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.094880e-01	ci left: 3.821313e-04	ci right 4.726783e-04	k: 349	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
ASTN2   820000 perm   490 sec   (1673 perm/sec)   p_kst 1.219512e-06   p_cons 4.256098e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.091897e-01	ci left: 3.786689e-04	ci right 4.682514e-04	k: 350	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
ASTN2   830000 perm   499 sec   (1662 perm/sec)   p_kst 1.204819e-06   p_cons 4.216867e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.074242e-01	ci left: 3.809312e-04	ci right 4.701918e-04	k: 356	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
ASTN2   840000 perm   509 sec   (1652 perm/sec)   p_kst 1.190476e-06   p_cons 4.238095e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.059866e-01	ci left: 3.820276e-04	ci right 4.708465e-04	k: 361	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
ASTN2   850000 perm   518 sec   (1641 perm/sec)   p_kst 1.176471e-06   p_cons 4.247059e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.045786e-01	ci left: 3.831005e-04	ci right 4.714839e-04	k: 366	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
ASTN2   860000 perm   527 sec   (1631 perm/sec)   p_kst 1.162791e-06   p_cons 4.255814e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.034727e-01	ci left: 3.830599e-04	ci right 4.708969e-04	k: 370	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
ASTN2   870000 perm   537 sec   (1621 perm/sec)   p_kst 1.149425e-06   p_cons 4.252874e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.029268e-01	ci left: 3.808640e-04	ci right 4.679340e-04	k: 372	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
ASTN2   880000 perm   546 sec   (1611 perm/sec)   p_kst 1.136364e-06   p_cons 4.227273e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.021157e-01	ci left: 3.797844e-04	ci right 4.662179e-04	k: 375	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
ASTN2   890000 perm   556 sec   (1601 perm/sec)   p_kst 1.123596e-06   p_cons 4.213483e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.007851e-01	ci left: 3.808400e-04	ci right 4.668731e-04	k: 380	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
ASTN2   900000 perm   566 sec   (1591 perm/sec)   p_kst 1.111111e-06   p_cons 4.222222e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.999993e-01	ci left: 3.797862e-04	ci right 4.652045e-04	k: 383	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
ASTN2   910000 perm   576 sec   (1581 perm/sec)   p_kst 1.098901e-06   p_cons 4.208791e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.994808e-01	ci left: 3.777232e-04	ci right 4.624305e-04	k: 385	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
ASTN2   920000 perm   585 sec   (1572 perm/sec)   p_kst 1.086957e-06   p_cons 4.184783e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.984552e-01	ci left: 3.777485e-04	ci right 4.619732e-04	k: 389	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
ASTN2   930000 perm   595 sec   (1563 perm/sec)   p_kst 1.075269e-06   p_cons 4.182796e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.966975e-01	ci left: 3.808084e-04	ci right 4.648732e-04	k: 396	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
ASTN2   940000 perm   605 sec   (1554 perm/sec)   p_kst 1.063830e-06   p_cons 4.212766e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.964506e-01	ci left: 3.778006e-04	ci right 4.610843e-04	k: 397	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
ASTN2   950000 perm   615 sec   (1544 perm/sec)   p_kst 1.052632e-06   p_cons 4.178947e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.947452e-01	ci left: 3.807999e-04	ci right 4.639295e-04	k: 404	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
ASTN2   960000 perm   625 sec   (1535 perm/sec)   p_kst 1.041667e-06   p_cons 4.208333e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.937906e-01	ci left: 3.807972e-04	ci right 4.634708e-04	k: 408	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
ASTN2   970000 perm   636 sec   (1526 perm/sec)   p_kst 1.030928e-06   p_cons 4.206186e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.926167e-01	ci left: 3.817668e-04	ci right 4.640900e-04	k: 413	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
ASTN2   980000 perm   646 sec   (1516 perm/sec)   p_kst 1.020408e-06   p_cons 4.214286e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.916929e-01	ci left: 3.817566e-04	ci right 4.636368e-04	k: 417	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
ASTN2   990000 perm   657 sec   (1507 perm/sec)   p_kst 1.010101e-06   p_cons 4.212121e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.905565e-01	ci left: 3.826999e-04	ci right 4.642393e-04	k: 422	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
ASTN2   1000000 perm   667 sec   (1499 perm/sec)   p_kst 1.000000e-06   p_cons 4.220000e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.901078e-01	ci left: 3.807966e-04	ci right 4.617174e-04	k: 424	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
ASTN2   1010000 perm   678 sec   (1490 perm/sec)   p_kst 9.900990e-07   p_cons 4.198020e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.887798e-01	ci left: 3.826667e-04	ci right 4.633517e-04	k: 430	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
ASTN2   1020000 perm   689 sec   (1481 perm/sec)   p_kst 9.803922e-07   p_cons 4.215686e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.887802e-01	ci left: 3.789514e-04	ci right 4.588532e-04	k: 430	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
ASTN2   1030000 perm   699 sec   (1473 perm/sec)   p_kst 9.708738e-07   p_cons 4.174757e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.885618e-01	ci left: 3.762237e-04	ci right 4.554482e-04	k: 431	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
ASTN2   1040000 perm   710 sec   (1464 perm/sec)   p_kst 9.615385e-07   p_cons 4.144231e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.870522e-01	ci left: 3.789939e-04	ci right 4.580902e-04	k: 438	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
ASTN2   1050000 perm   721 sec   (1455 perm/sec)   p_kst 9.523810e-07   p_cons 4.171429e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.855782e-01	ci left: 3.817143e-04	ci right 4.606800e-04	k: 445	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
ASTN2   1060000 perm   732 sec   (1447 perm/sec)   p_kst 9.433962e-07   p_cons 4.198113e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.849573e-01	ci left: 3.808206e-04	ci right 4.593082e-04	k: 448	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
ASTN2   1070000 perm   743 sec   (1439 perm/sec)   p_kst 9.345794e-07   p_cons 4.186916e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.807767e-01	ci left: 3.958492e-04	ci right 4.753884e-04	k: 469	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
ASTN2   1080000 perm   755 sec   (1431 perm/sec)   p_kst 9.259259e-07   p_cons 4.342593e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.796336e-01	ci left: 3.974739e-04	ci right 4.767797e-04	k: 475	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
ASTN2   1090000 perm   766 sec   (1424 perm/sec)   p_kst 9.174312e-07   p_cons 4.357798e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.786975e-01	ci left: 3.982021e-04	ci right 4.771944e-04	k: 480	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
ASTN2   1100000 perm   777 sec   (1416 perm/sec)   p_kst 9.090909e-07   p_cons 4.363636e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.772294e-01	ci left: 4.015010e-04	ci right 4.804232e-04	k: 488	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
ASTN2   1110000 perm   788 sec   (1408 perm/sec)   p_kst 9.009009e-07   p_cons 4.396396e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.765090e-01	ci left: 4.013295e-04	ci right 4.798631e-04	k: 492	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
ASTN2   1120000 perm   800 sec   (1400 perm/sec)   p_kst 8.928571e-07   p_cons 4.392857e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.754445e-01	ci left: 4.028538e-04	ci right 4.811598e-04	k: 498	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
ASTN2   1130000 perm   811 sec   (1393 perm/sec)   p_kst 8.849558e-07   p_cons 4.407080e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.738830e-01	ci left: 4.068696e-04	ci right 4.851786e-04	k: 507	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
ASTN2   1140000 perm   823 sec   (1385 perm/sec)   p_kst 8.771930e-07   p_cons 4.447368e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.733720e-01	ci left: 4.058270e-04	ci right 4.836816e-04	k: 510	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
ASTN2   1150000 perm   835 sec   (1377 perm/sec)   p_kst 8.695652e-07   p_cons 4.434783e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.721964e-01	ci left: 4.081020e-04	ci right 4.858071e-04	k: 517	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
ASTN2   1160000 perm   847 sec   (1370 perm/sec)   p_kst 8.620690e-07   p_cons 4.456897e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.712076e-01	ci left: 4.095218e-04	ci right 4.870032e-04	k: 523	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
ASTN2   1170000 perm   859 sec   (1363 perm/sec)   p_kst 8.547009e-07   p_cons 4.470085e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.705579e-01	ci left: 4.092961e-04	ci right 4.864107e-04	k: 527	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
ASTN2   1180000 perm   871 sec   (1355 perm/sec)   p_kst 8.474576e-07   p_cons 4.466102e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.700755e-01	ci left: 4.082702e-04	ci right 4.849516e-04	k: 530	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
ASTN2   1190000 perm   883 sec   (1348 perm/sec)   p_kst 8.403361e-07   p_cons 4.453782e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.697563e-01	ci left: 4.064637e-04	ci right 4.826479e-04	k: 532	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
ASTN2   1200000 perm   894 sec   (1342 perm/sec)   p_kst 8.333333e-07   p_cons 4.433333e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.694388e-01	ci left: 4.046872e-04	ci right 4.803821e-04	k: 534	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
ASTN2   1210000 perm   907 sec   (1335 perm/sec)   p_kst 8.264463e-07   p_cons 4.413223e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.692809e-01	ci left: 4.021550e-04	ci right 4.772990e-04	k: 535	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
ASTN2   1220000 perm   919 sec   (1328 perm/sec)   p_kst 8.196721e-07   p_cons 4.385246e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.684968e-01	ci left: 4.027787e-04	ci right 4.776552e-04	k: 540	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
ASTN2   1230000 perm   931 sec   (1321 perm/sec)   p_kst 8.130081e-07   p_cons 4.390244e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.680317e-01	ci left: 4.018479e-04	ci right 4.763243e-04	k: 543	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
ASTN2   1240000 perm   944 sec   (1314 perm/sec)   p_kst 8.064516e-07   p_cons 4.379032e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.675704e-01	ci left: 4.009323e-04	ci right 4.750144e-04	k: 546	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
ASTN2   1250000 perm   956 sec   (1307 perm/sec)   p_kst 8.000000e-07   p_cons 4.368000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.671128e-01	ci left: 4.000315e-04	ci right 4.737251e-04	k: 549	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
ASTN2   1260000 perm   969 sec   (1301 perm/sec)   p_kst 7.936508e-07   p_cons 4.357143e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.665084e-01	ci left: 3.998998e-04	ci right 4.732759e-04	k: 553	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
ASTN2   1270000 perm   981 sec   (1294 perm/sec)   p_kst 7.874016e-07   p_cons 4.354331e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.656139e-01	ci left: 4.012683e-04	ci right 4.744606e-04	k: 559	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
ASTN2   1280000 perm   994 sec   (1288 perm/sec)   p_kst 7.812500e-07   p_cons 4.367187e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.648795e-01	ci left: 4.018734e-04	ci right 4.748187e-04	k: 564	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
ASTN2   1290000 perm   1006 sec   (1282 perm/sec)   p_kst 7.751938e-07   p_cons 4.372093e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.645886e-01	ci left: 4.002571e-04	ci right 4.727681e-04	k: 566	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
ASTN2   1300000 perm   1019 sec   (1276 perm/sec)   p_kst 7.692308e-07   p_cons 4.353846e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.642992e-01	ci left: 3.986655e-04	ci right 4.707487e-04	k: 568	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
ASTN2   1310000 perm   1032 sec   (1269 perm/sec)   p_kst 7.633588e-07   p_cons 4.335878e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.637247e-01	ci left: 3.985513e-04	ci right 4.703370e-04	k: 572	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
ASTN2   1320000 perm   1045 sec   (1263 perm/sec)   p_kst 7.575758e-07   p_cons 4.333333e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.630150e-01	ci left: 3.991603e-04	ci right 4.707136e-04	k: 577	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
ASTN2   1330000 perm   1058 sec   (1257 perm/sec)   p_kst 7.518797e-07   p_cons 4.338346e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.620366e-01	ci left: 4.011930e-04	ci right 4.726369e-04	k: 584	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
ASTN2   1340000 perm   1071 sec   (1252 perm/sec)   p_kst 7.462687e-07   p_cons 4.358209e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.614855e-01	ci left: 4.010642e-04	ci right 4.722187e-04	k: 588	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
ASTN2   1350000 perm   1084 sec   (1246 perm/sec)   p_kst 7.407407e-07   p_cons 4.355556e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.608044e-01	ci left: 4.016434e-04	ci right 4.725711e-04	k: 593	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
ASTN2   1360000 perm   1097 sec   (1240 perm/sec)   p_kst 7.352941e-07   p_cons 4.360294e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.599982e-01	ci left: 4.029155e-04	ci right 4.736769e-04	k: 599	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
ASTN2   1370000 perm   1110 sec   (1234 perm/sec)   p_kst 7.299270e-07   p_cons 4.372263e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.593357e-01	ci left: 4.034743e-04	ci right 4.740122e-04	k: 604	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
ASTN2   1380000 perm   1124 sec   (1228 perm/sec)   p_kst 7.246377e-07   p_cons 4.376812e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.589422e-01	ci left: 4.026439e-04	ci right 4.728463e-04	k: 607	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
ASTN2   1390000 perm   1137 sec   (1222 perm/sec)   p_kst 7.194245e-07   p_cons 4.366906e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.588118e-01	ci left: 4.004537e-04	ci right 4.702115e-04	k: 608	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
ASTN2   1400000 perm   1151 sec   (1216 perm/sec)   p_kst 7.142857e-07   p_cons 4.342857e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.586818e-01	ci left: 3.982946e-04	ci right 4.676141e-04	k: 609	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
ASTN2   1410000 perm   1165 sec   (1211 perm/sec)   p_kst 7.092199e-07   p_cons 4.319149e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.585520e-01	ci left: 3.961660e-04	ci right 4.650532e-04	k: 610	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
ASTN2   1420000 perm   1178 sec   (1205 perm/sec)   p_kst 7.042254e-07   p_cons 4.295775e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.579072e-01	ci left: 3.967536e-04	ci right 4.654359e-04	k: 615	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
ASTN2   1430000 perm   1192 sec   (1199 perm/sec)   p_kst 6.993007e-07   p_cons 4.300699e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.576516e-01	ci left: 3.953324e-04	ci right 4.636474e-04	k: 617	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
ASTN2   1440000 perm   1206 sec   (1194 perm/sec)   p_kst 6.944444e-07   p_cons 4.284722e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.570177e-01	ci left: 3.959185e-04	ci right 4.640338e-04	k: 622	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
ASTN2   1450000 perm   1220 sec   (1188 perm/sec)   p_kst 6.896552e-07   p_cons 4.289655e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.565160e-01	ci left: 3.958390e-04	ci right 4.637026e-04	k: 626	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
ASTN2   1460000 perm   1234 sec   (1183 perm/sec)   p_kst 6.849315e-07   p_cons 4.287671e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.562671e-01	ci left: 3.944535e-04	ci right 4.619619e-04	k: 628	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
ASTN2   1470000 perm   1248 sec   (1178 perm/sec)   p_kst 6.802721e-07   p_cons 4.272109e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.557726e-01	ci left: 3.943855e-04	ci right 4.616487e-04	k: 632	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
ASTN2   1480000 perm   1263 sec   (1172 perm/sec)   p_kst 6.756757e-07   p_cons 4.270270e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.552828e-01	ci left: 3.943187e-04	ci right 4.613393e-04	k: 636	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
ASTN2   1490000 perm   1277 sec   (1167 perm/sec)   p_kst 6.711409e-07   p_cons 4.268456e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.549185e-01	ci left: 3.936122e-04	ci right 4.603413e-04	k: 639	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
ASTN2   1500000 perm   1291 sec   (1162 perm/sec)   p_kst 6.666667e-07   p_cons 4.260000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.544366e-01	ci left: 3.935520e-04	ci right 4.600442e-04	k: 643	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
ASTN2   1510000 perm   1306 sec   (1157 perm/sec)   p_kst 6.622517e-07   p_cons 4.258278e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.541975e-01	ci left: 3.922278e-04	ci right 4.583841e-04	k: 645	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
ASTN2   1520000 perm   1320 sec   (1151 perm/sec)   p_kst 6.578947e-07   p_cons 4.243421e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.536042e-01	ci left: 3.928064e-04	ci right 4.587819e-04	k: 650	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
ASTN2   1530000 perm   1335 sec   (1146 perm/sec)   p_kst 6.535948e-07   p_cons 4.248366e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.533689e-01	ci left: 3.915045e-04	ci right 4.571514e-04	k: 652	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
ASTN2   1540000 perm   1349 sec   (1141 perm/sec)   p_kst 6.493506e-07   p_cons 4.233766e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.530178e-01	ci left: 3.908399e-04	ci right 4.562116e-04	k: 655	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
ASTN2   1550000 perm   1364 sec   (1136 perm/sec)   p_kst 6.451613e-07   p_cons 4.225806e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.525535e-01	ci left: 3.908006e-04	ci right 4.559492e-04	k: 659	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
ASTN2   1560000 perm   1379 sec   (1131 perm/sec)   p_kst 6.410256e-07   p_cons 4.224359e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.519788e-01	ci left: 3.913748e-04	ci right 4.563511e-04	k: 664	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
ASTN2   1570000 perm   1394 sec   (1127 perm/sec)   p_kst 6.369427e-07   p_cons 4.229299e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.517509e-01	ci left: 3.901155e-04	ci right 4.547767e-04	k: 666	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
ASTN2   1580000 perm   1409 sec   (1122 perm/sec)   p_kst 6.329114e-07   p_cons 4.215190e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.516374e-01	ci left: 3.882670e-04	ci right 4.525693e-04	k: 667	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
ASTN2   1590000 perm   1424 sec   (1117 perm/sec)   p_kst 6.289308e-07   p_cons 4.194969e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.510731e-01	ci left: 3.888469e-04	ci right 4.529840e-04	k: 672	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
ASTN2   1600000 perm   1439 sec   (1112 perm/sec)   p_kst 6.250000e-07   p_cons 4.200000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.507375e-01	ci left: 3.882247e-04	ci right 4.521041e-04	k: 675	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
ASTN2   1610000 perm   1454 sec   (1107 perm/sec)   p_kst 6.211180e-07   p_cons 4.192547e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.501831e-01	ci left: 3.887985e-04	ci right 4.525158e-04	k: 680	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
ASTN2   1620000 perm   1470 sec   (1102 perm/sec)   p_kst 6.172840e-07   p_cons 4.197531e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.496348e-01	ci left: 3.893657e-04	ci right 4.529221e-04	k: 685	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
ASTN2   1630000 perm   1485 sec   (1098 perm/sec)   p_kst 6.134969e-07   p_cons 4.202454e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.494172e-01	ci left: 3.881654e-04	ci right 4.514255e-04	k: 687	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
ASTN2   1640000 perm   1500 sec   (1093 perm/sec)   p_kst 6.097561e-07   p_cons 4.189024e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.489847e-01	ci left: 3.881466e-04	ci right 4.512043e-04	k: 691	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
ASTN2   1650000 perm   1516 sec   (1089 perm/sec)   p_kst 6.060606e-07   p_cons 4.187879e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.486629e-01	ci left: 3.875483e-04	ci right 4.503607e-04	k: 694	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
ASTN2   1660000 perm   1531 sec   (1084 perm/sec)   p_kst 6.024096e-07   p_cons 4.180723e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.483431e-01	ci left: 3.869573e-04	ci right 4.495270e-04	k: 697	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
ASTN2   1670000 perm   1547 sec   (1080 perm/sec)   p_kst 5.988024e-07   p_cons 4.173653e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.480254e-01	ci left: 3.863735e-04	ci right 4.487031e-04	k: 700	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
ASTN2   1680000 perm   1562 sec   (1075 perm/sec)   p_kst 5.952381e-07   p_cons 4.166667e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.480256e-01	ci left: 3.840872e-04	ci right 4.460481e-04	k: 700	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
ASTN2   1690000 perm   1578 sec   (1071 perm/sec)   p_kst 5.917160e-07   p_cons 4.142012e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.479203e-01	ci left: 3.823943e-04	ci right 4.440344e-04	k: 701	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
ASTN2   1700000 perm   1594 sec   (1067 perm/sec)   p_kst 5.882353e-07   p_cons 4.123529e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.477101e-01	ci left: 3.812844e-04	ci right 4.426505e-04	k: 703	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
ASTN2   1710000 perm   1610 sec   (1062 perm/sec)   p_kst 5.847953e-07   p_cons 4.111111e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.471883e-01	ci left: 3.818674e-04	ci right 4.430911e-04	k: 708	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
ASTN2   1720000 perm   1626 sec   (1058 perm/sec)   p_kst 5.813953e-07   p_cons 4.116279e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.469812e-01	ci left: 3.807735e-04	ci right 4.417285e-04	k: 710	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
ASTN2   1730000 perm   1642 sec   (1054 perm/sec)   p_kst 5.780347e-07   p_cons 4.104046e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.466722e-01	ci left: 3.802460e-04	ci right 4.409772e-04	k: 713	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
ASTN2   1740000 perm   1658 sec   (1049 perm/sec)   p_kst 5.747126e-07   p_cons 4.097701e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.460597e-01	ci left: 3.813762e-04	ci right 4.420114e-04	k: 719	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
ASTN2   1750000 perm   1675 sec   (1045 perm/sec)   p_kst 5.714286e-07   p_cons 4.108571e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.456556e-01	ci left: 3.813990e-04	ci right 4.418556e-04	k: 723	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
ASTN2   1760000 perm   1691 sec   (1041 perm/sec)   p_kst 5.681818e-07   p_cons 4.107955e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.476063e-01	ci left: 3.689034e-04	ci right 4.282314e-04	k: 704	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
ASTN2   1770000 perm   1707 sec   (1037 perm/sec)   p_kst 5.649718e-07   p_cons 3.977401e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.471893e-01	ci left: 3.689952e-04	ci right 4.281557e-04	k: 708	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
ASTN2   1780000 perm   1724 sec   (1033 perm/sec)   p_kst 5.617978e-07   p_cons 3.977528e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.548029e-01	ci left: 3.303788e-04	ci right 3.863422e-04	k: 640	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
ASTN2   1790000 perm   1740 sec   (1029 perm/sec)   p_kst 5.586592e-07   p_cons 3.575419e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.544420e-01	ci left: 3.301456e-04	ci right 3.859270e-04	k: 643	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
ASTN2   1800000 perm   1757 sec   (1025 perm/sec)   p_kst 5.555556e-07   p_cons 3.572222e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.537274e-01	ci left: 3.315087e-04	ci right 3.872374e-04	k: 649	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
ASTN2   1810000 perm   1774 sec   (1021 perm/sec)   p_kst 5.524862e-07   p_cons 3.585635e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.537275e-01	ci left: 3.296872e-04	ci right 3.851098e-04	k: 649	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
ASTN2   1820000 perm   1790 sec   (1017 perm/sec)   p_kst 5.494505e-07   p_cons 3.565934e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.534917e-01	ci left: 3.289365e-04	ci right 3.841402e-04	k: 651	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
ASTN2   1830000 perm   1807 sec   (1013 perm/sec)   p_kst 5.464481e-07   p_cons 3.557377e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.532568e-01	ci left: 3.281940e-04	ci right 3.831812e-04	k: 653	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
ASTN2   1840000 perm   1824 sec   (1009 perm/sec)   p_kst 5.434783e-07   p_cons 3.548913e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.525585e-01	ci left: 3.295392e-04	ci right 3.844771e-04	k: 659	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
ASTN2   1850000 perm   1841 sec   (1005 perm/sec)   p_kst 5.405405e-07   p_cons 3.562162e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.517557e-01	ci left: 3.313876e-04	ci right 3.863166e-04	k: 666	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
ASTN2   1860000 perm   1859 sec   (1001 perm/sec)   p_kst 5.376344e-07   p_cons 3.580645e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.514156e-01	ci left: 3.311589e-04	ci right 3.859159e-04	k: 669	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
ASTN2   1870000 perm   1876 sec   (997 perm/sec)   p_kst 5.347594e-07   p_cons 3.577540e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.511902e-01	ci left: 3.304210e-04	ci right 3.849672e-04	k: 671	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
ASTN2   1880000 perm   1893 sec   (993 perm/sec)   p_kst 5.319149e-07   p_cons 3.569149e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.509658e-01	ci left: 3.296909e-04	ci right 3.840285e-04	k: 673	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
ASTN2   1890000 perm   1911 sec   (989 perm/sec)   p_kst 5.291005e-07   p_cons 3.560847e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.505198e-01	ci left: 3.299816e-04	ci right 3.841919e-04	k: 677	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
ASTN2   1900000 perm   1928 sec   (985 perm/sec)   p_kst 5.263158e-07   p_cons 3.563158e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.501879e-01	ci left: 3.297655e-04	ci right 3.838102e-04	k: 680	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
ASTN2   1910000 perm   1945 sec   (982 perm/sec)   p_kst 5.235602e-07   p_cons 3.560209e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.498582e-01	ci left: 3.295518e-04	ci right 3.834323e-04	k: 683	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
ASTN2   1920000 perm   1963 sec   (978 perm/sec)   p_kst 5.208333e-07   p_cons 3.557292e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.494219e-01	ci left: 3.298393e-04	ci right 3.835957e-04	k: 687	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
ASTN2   1930000 perm   1981 sec   (974 perm/sec)   p_kst 5.181347e-07   p_cons 3.559585e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.490972e-01	ci left: 3.296277e-04	ci right 3.832225e-04	k: 690	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
ASTN2   1940000 perm   1998 sec   (971 perm/sec)   p_kst 5.154639e-07   p_cons 3.556701e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.486675e-01	ci left: 3.299122e-04	ci right 3.833849e-04	k: 694	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
ASTN2   1950000 perm   2016 sec   (967 perm/sec)   p_kst 5.128205e-07   p_cons 3.558974e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.483477e-01	ci left: 3.297027e-04	ci right 3.830163e-04	k: 697	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
ASTN2   1960000 perm   2034 sec   (964 perm/sec)   p_kst 5.102041e-07   p_cons 3.556122e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.476093e-01	ci left: 3.314508e-04	ci right 3.847568e-04	k: 704	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
ASTN2   1970000 perm   2052 sec   (960 perm/sec)   p_kst 5.076142e-07   p_cons 3.573604e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.468818e-01	ci left: 3.331820e-04	ci right 3.864790e-04	k: 711	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
ASTN2   1980000 perm   2070 sec   (957 perm/sec)   p_kst 5.050505e-07   p_cons 3.590909e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.462667e-01	ci left: 3.344122e-04	ci right 3.876625e-04	k: 717	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
ASTN2   1990000 perm   2088 sec   (953 perm/sec)   p_kst 5.025126e-07   p_cons 3.603015e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.457600e-01	ci left: 3.351488e-04	ci right 3.883154e-04	k: 722	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
ASTN2   2000000 perm   2106 sec   (950 perm/sec)   p_kst 5.000000e-07   p_cons 3.610000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.454585e-01	ci left: 3.349196e-04	ci right 3.879304e-04	k: 725	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
ASTN2   2010000 perm   2124 sec   (946 perm/sec)   p_kst 4.975124e-07   p_cons 3.606965e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.448611e-01	ci left: 3.361240e-04	ci right 3.890880e-04	k: 731	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
ASTN2   2020000 perm   2143 sec   (943 perm/sec)   p_kst 4.950495e-07   p_cons 3.618812e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.445652e-01	ci left: 3.358925e-04	ci right 3.887026e-04	k: 734	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
ASTN2   2030000 perm   2162 sec   (939 perm/sec)   p_kst 4.926108e-07   p_cons 3.615764e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.439786e-01	ci left: 3.370810e-04	ci right 3.898445e-04	k: 740	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
ASTN2   2040000 perm   2180 sec   (936 perm/sec)   p_kst 4.901961e-07   p_cons 3.627451e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.434952e-01	ci left: 3.377880e-04	ci right 3.904695e-04	k: 745	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
ASTN2   2050000 perm   2198 sec   (933 perm/sec)   p_kst 4.878049e-07   p_cons 3.634146e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.431121e-01	ci left: 3.380204e-04	ci right 3.905853e-04	k: 749	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
ASTN2   2060000 perm   2217 sec   (929 perm/sec)   p_kst 4.854369e-07   p_cons 3.635922e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.429217e-01	ci left: 3.373191e-04	ci right 3.896992e-04	k: 751	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
ASTN2   2070000 perm   2235 sec   (926 perm/sec)   p_kst 4.830918e-07   p_cons 3.628019e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.425431e-01	ci left: 3.375517e-04	ci right 3.898173e-04	k: 755	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
ASTN2   2080000 perm   2254 sec   (923 perm/sec)   p_kst 4.807692e-07   p_cons 3.629808e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.420740e-01	ci left: 3.382438e-04	ci right 3.904296e-04	k: 760	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
ASTN2   2090000 perm   2273 sec   (920 perm/sec)   p_kst 4.784689e-07   p_cons 3.636364e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.414249e-01	ci left: 3.398483e-04	ci right 3.920219e-04	k: 767	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
ASTN2   2100000 perm   2292 sec   (916 perm/sec)   p_kst 4.761905e-07   p_cons 3.652381e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.410580e-01	ci left: 3.400664e-04	ci right 3.921266e-04	k: 771	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
ASTN2   2110000 perm   2311 sec   (913 perm/sec)   p_kst 4.739336e-07   p_cons 3.654028e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.406034e-01	ci left: 3.407377e-04	ci right 3.927185e-04	k: 776	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
ASTN2   2120000 perm   2330 sec   (910 perm/sec)   p_kst 4.716981e-07   p_cons 3.660377e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.403328e-01	ci left: 3.404969e-04	ci right 3.923327e-04	k: 779	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
ASTN2   2130000 perm   2349 sec   (907 perm/sec)   p_kst 4.694836e-07   p_cons 3.657277e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.398851e-01	ci left: 3.411604e-04	ci right 3.929176e-04	k: 784	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
ASTN2   2140000 perm   2368 sec   (904 perm/sec)   p_kst 4.672897e-07   p_cons 3.663551e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.397073e-01	ci left: 3.404713e-04	ci right 3.920529e-04	k: 786	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
ASTN2   2150000 perm   2388 sec   (900 perm/sec)   p_kst 4.651163e-07   p_cons 3.655814e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.394418e-01	ci left: 3.402354e-04	ci right 3.916752e-04	k: 789	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
ASTN2   2160000 perm   2407 sec   (897 perm/sec)   p_kst 4.629630e-07   p_cons 3.652778e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.391778e-01	ci left: 3.400018e-04	ci right 3.913009e-04	k: 792	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
ASTN2   2170000 perm   2426 sec   (894 perm/sec)   p_kst 4.608295e-07   p_cons 3.649770e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.385675e-01	ci left: 3.415416e-04	ci right 3.928284e-04	k: 799	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
ASTN2   2180000 perm   2446 sec   (891 perm/sec)   p_kst 4.587156e-07   p_cons 3.665138e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.381364e-01	ci left: 3.421862e-04	ci right 3.933967e-04	k: 804	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
ASTN2   2190000 perm   2465 sec   (888 perm/sec)   p_kst 4.566210e-07   p_cons 3.671233e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.375396e-01	ci left: 3.437029e-04	ci right 3.949000e-04	k: 811	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
ASTN2   2200000 perm   2485 sec   (885 perm/sec)   p_kst 4.545455e-07   p_cons 3.686364e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.372021e-01	ci left: 3.438954e-04	ci right 3.949852e-04	k: 815	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
ASTN2   2210000 perm   2505 sec   (882 perm/sec)   p_kst 4.524887e-07   p_cons 3.687783e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.370343e-01	ci left: 3.432164e-04	ci right 3.941378e-04	k: 817	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
ASTN2   2220000 perm   2524 sec   (879 perm/sec)   p_kst 4.504505e-07   p_cons 3.680180e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.366174e-01	ci left: 3.438427e-04	ci right 3.946892e-04	k: 822	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
ASTN2   2230000 perm   2544 sec   (877 perm/sec)   p_kst 4.484305e-07   p_cons 3.686099e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.363691e-01	ci left: 3.436012e-04	ci right 3.943122e-04	k: 825	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
ASTN2   2240000 perm   2564 sec   (874 perm/sec)   p_kst 4.464286e-07   p_cons 3.683036e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.360401e-01	ci left: 3.437913e-04	ci right 3.943980e-04	k: 829	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
ASTN2   2250000 perm   2584 sec   (871 perm/sec)   p_kst 4.444444e-07   p_cons 3.684444e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.356321e-01	ci left: 3.444073e-04	ci right 3.949404e-04	k: 834	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
ASTN2   2260000 perm   2604 sec   (868 perm/sec)   p_kst 4.424779e-07   p_cons 3.690265e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.352278e-01	ci left: 3.450181e-04	ci right 3.954778e-04	k: 839	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
ASTN2   2270000 perm   2624 sec   (865 perm/sec)   p_kst 4.405286e-07   p_cons 3.696035e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.350671e-01	ci left: 3.443524e-04	ci right 3.946501e-04	k: 841	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
ASTN2   2280000 perm   2644 sec   (862 perm/sec)   p_kst 4.385965e-07   p_cons 3.688596e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.348272e-01	ci left: 3.441145e-04	ci right 3.942810e-04	k: 844	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
ASTN2   2290000 perm   2664 sec   (860 perm/sec)   p_kst 4.366812e-07   p_cons 3.685590e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.348273e-01	ci left: 3.426183e-04	ci right 3.925668e-04	k: 844	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
ASTN2   2300000 perm   2686 sec   (856 perm/sec)   p_kst 4.347826e-07   p_cons 3.669565e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.345886e-01	ci left: 3.423901e-04	ci right 3.922098e-04	k: 847	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
ASTN2   2310000 perm   2706 sec   (854 perm/sec)   p_kst 4.329004e-07   p_cons 3.666667e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.344302e-01	ci left: 3.417473e-04	ci right 3.914103e-04	k: 849	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
ASTN2   2320000 perm   2726 sec   (851 perm/sec)   p_kst 4.310345e-07   p_cons 3.659483e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.337240e-01	ci left: 3.440137e-04	ci right 3.937225e-04	k: 858	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
ASTN2   2330000 perm   2746 sec   (848 perm/sec)   p_kst 4.291845e-07   p_cons 3.682403e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.333365e-01	ci left: 3.446089e-04	ci right 3.942480e-04	k: 863	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
ASTN2   2340000 perm   2767 sec   (846 perm/sec)   p_kst 4.273504e-07   p_cons 3.688034e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.332594e-01	ci left: 3.435538e-04	ci right 3.930101e-04	k: 864	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
ASTN2   2350000 perm   2787 sec   (843 perm/sec)   p_kst 4.255319e-07   p_cons 3.676596e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.330290e-01	ci left: 3.433270e-04	ci right 3.926583e-04	k: 867	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
ASTN2   2360000 perm   2808 sec   (841 perm/sec)   p_kst 4.237288e-07   p_cons 3.673729e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.324957e-01	ci left: 3.447338e-04	ci right 3.940532e-04	k: 874	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
ASTN2   2370000 perm   2830 sec   (837 perm/sec)   p_kst 4.219409e-07   p_cons 3.687764e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.321939e-01	ci left: 3.449104e-04	ci right 3.941337e-04	k: 878	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
ASTN2   2380000 perm   2853 sec   (834 perm/sec)   p_kst 4.201681e-07   p_cons 3.689076e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.321188e-01	ci left: 3.438718e-04	ci right 3.929169e-04	k: 879	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
ASTN2   2390000 perm   2873 sec   (832 perm/sec)   p_kst 4.184100e-07   p_cons 3.677824e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.316706e-01	ci left: 3.448565e-04	ci right 3.938622e-04	k: 885	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
ASTN2   2400000 perm   2894 sec   (829 perm/sec)   p_kst 4.166667e-07   p_cons 3.687500e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.312270e-01	ci left: 3.458334e-04	ci right 3.947993e-04	k: 891	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
ASTN2   2410000 perm   2915 sec   (827 perm/sec)   p_kst 4.149378e-07   p_cons 3.697095e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.309337e-01	ci left: 3.460030e-04	ci right 3.948750e-04	k: 895	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
ASTN2   2420000 perm   2935 sec   (824 perm/sec)   p_kst 4.132231e-07   p_cons 3.698347e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.308608e-01	ci left: 3.449772e-04	ci right 3.936750e-04	k: 896	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
ASTN2   2430000 perm   2956 sec   (822 perm/sec)   p_kst 4.115226e-07   p_cons 3.687243e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.306425e-01	ci left: 3.447526e-04	ci right 3.933313e-04	k: 899	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
ASTN2   2440000 perm   2978 sec   (819 perm/sec)   p_kst 4.098361e-07   p_cons 3.684426e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.300656e-01	ci left: 3.465043e-04	ci right 3.950975e-04	k: 907	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
ASTN2   2450000 perm   2999 sec   (817 perm/sec)   p_kst 4.081633e-07   p_cons 3.702041e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.297801e-01	ci left: 3.466689e-04	ci right 3.951703e-04	k: 911	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
ASTN2   2460000 perm   3020 sec   (815 perm/sec)   p_kst 4.065041e-07   p_cons 3.703252e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.296381e-01	ci left: 3.460488e-04	ci right 3.944064e-04	k: 913	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
ASTN2   2470000 perm   3041 sec   (812 perm/sec)   p_kst 4.048583e-07   p_cons 3.696356e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.294258e-01	ci left: 3.458240e-04	ci right 3.940649e-04	k: 916	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
ASTN2   2480000 perm   3062 sec   (810 perm/sec)   p_kst 4.032258e-07   p_cons 3.693548e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.290744e-01	ci left: 3.463782e-04	ci right 3.945552e-04	k: 921	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
ASTN2   2490000 perm   3083 sec   (808 perm/sec)   p_kst 4.016064e-07   p_cons 3.698795e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.290745e-01	ci left: 3.449927e-04	ci right 3.929770e-04	k: 921	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
ASTN2   2500000 perm   3105 sec   (805 perm/sec)   p_kst 4.000000e-07   p_cons 3.684000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.290046e-01	ci left: 3.440037e-04	ci right 3.918227e-04	k: 922	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
ASTN2   2510000 perm   3128 sec   (802 perm/sec)   p_kst 3.984064e-07   p_cons 3.673307e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.289349e-01	ci left: 3.430227e-04	ci right 3.906774e-04	k: 923	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
ASTN2   2520000 perm   3150 sec   (800 perm/sec)   p_kst 3.968254e-07   p_cons 3.662698e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.286567e-01	ci left: 3.431969e-04	ci right 3.907652e-04	k: 927	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
ASTN2   2530000 perm   3172 sec   (798 perm/sec)   p_kst 3.952569e-07   p_cons 3.664032e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.281056e-01	ci left: 3.448942e-04	ci right 3.924774e-04	k: 935	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
ASTN2   2540000 perm   3194 sec   (795 perm/sec)   p_kst 3.937008e-07   p_cons 3.681102e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.279008e-01	ci left: 3.446805e-04	ci right 3.921524e-04	k: 938	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
ASTN2   2550000 perm   3216 sec   (793 perm/sec)   p_kst 3.921569e-07   p_cons 3.678431e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.275616e-01	ci left: 3.452248e-04	ci right 3.926361e-04	k: 943	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
ASTN2   2560000 perm   3238 sec   (791 perm/sec)   p_kst 3.906250e-07   p_cons 3.683594e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.272251e-01	ci left: 3.457651e-04	ci right 3.931158e-04	k: 948	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
ASTN2   2570000 perm   3263 sec   (788 perm/sec)   p_kst 3.891051e-07   p_cons 3.688716e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.270245e-01	ci left: 3.455507e-04	ci right 3.927918e-04	k: 951	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
ASTN2   2580000 perm   3286 sec   (785 perm/sec)   p_kst 3.875969e-07   p_cons 3.686047e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.266260e-01	ci left: 3.464597e-04	ci right 3.936653e-04	k: 957	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
ASTN2   2590000 perm   3309 sec   (783 perm/sec)   p_kst 3.861004e-07   p_cons 3.694981e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.262968e-01	ci left: 3.469894e-04	ci right 3.941351e-04	k: 962	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
ASTN2   2600000 perm   3331 sec   (780 perm/sec)   p_kst 3.846154e-07   p_cons 3.700000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.259702e-01	ci left: 3.475152e-04	ci right 3.946011e-04	k: 967	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
ASTN2   2610000 perm   3354 sec   (778 perm/sec)   p_kst 3.831418e-07   p_cons 3.704981e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.256461e-01	ci left: 3.480371e-04	ci right 3.950634e-04	k: 972	n:2620000
KS ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
ASTN2   2620000 perm   3376 sec   (776 perm/sec)   p_kst 7.633588e-07   p_cons 3.709924e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.253244e-01	ci left: 3.485553e-04	ci right 3.955221e-04	k: 977	n:2630000
KS ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
ASTN2   2630000 perm   3398 sec   (774 perm/sec)   p_kst 7.604563e-07   p_cons 3.714829e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.248783e-01	ci left: 3.498035e-04	ci right 3.967583e-04	k: 984	n:2640000
KS ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
ASTN2   2640000 perm   3421 sec   (772 perm/sec)   p_kst 7.575758e-07   p_cons 3.727273e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.246255e-01	ci left: 3.499458e-04	ci right 3.968176e-04	k: 988	n:2650000
KS ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
ASTN2   2650000 perm   3444 sec   (769 perm/sec)   p_kst 7.547170e-07   p_cons 3.728302e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.246256e-01	ci left: 3.486302e-04	ci right 3.953258e-04	k: 988	n:2660000
KS ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
ASTN2   2660000 perm   3467 sec   (767 perm/sec)   p_kst 7.518797e-07   p_cons 3.714286e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.244370e-01	ci left: 3.484131e-04	ci right 3.950038e-04	k: 991	n:2670000
KS ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
ASTN2   2670000 perm   3490 sec   (765 perm/sec)   p_kst 7.490637e-07   p_cons 3.711610e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.243744e-01	ci left: 3.474746e-04	ci right 3.939147e-04	k: 992	n:2680000
KS ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
ASTN2   2680000 perm   3514 sec   (763 perm/sec)   p_kst 7.462687e-07   p_cons 3.701493e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.240003e-01	ci left: 3.483440e-04	ci right 3.947500e-04	k: 998	n:2690000
KS ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
ASTN2   2690000 perm   3537 sec   (761 perm/sec)   p_kst 7.434944e-07   p_cons 3.710037e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 1.238764e-01	ci left: 3.477717e-04	ci right 3.940517e-04	k: 1000	n:2700000
KS ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
ASTN2   2700000 perm   3560 sec   (758 perm/sec)   p_kst 7.407407e-07   p_cons 3.703704e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 1.237528e-01	ci left: 3.472035e-04	ci right 3.933585e-04	k: 1002	n:2710000
KS ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
ASTN2   2710000 perm   3583 sec   (756 perm/sec)   p_kst 7.380074e-07   p_cons 3.697417e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 1.235682e-01	ci left: 3.469958e-04	ci right 3.930493e-04	k: 1005	n:2720000
KS ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
ASTN2   2720000 perm   3609 sec   (754 perm/sec)   p_kst 7.352941e-07   p_cons 3.694853e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 1.232013e-01	ci left: 3.478548e-04	ci right 3.938752e-04	k: 1011	n:2730000
KS ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
ASTN2   2730000 perm   3633 sec   (751 perm/sec)   p_kst 7.326007e-07   p_cons 3.703297e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 1.228980e-01	ci left: 3.483539e-04	ci right 3.943186e-04	k: 1016	n:2740000
KS ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
ASTN2   2740000 perm   3658 sec   (749 perm/sec)   p_kst 7.299270e-07   p_cons 3.708029e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 1.228377e-01	ci left: 3.474396e-04	ci right 3.932596e-04	k: 1017	n:2750000
KS ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
ASTN2   2750000 perm   3681 sec   (747 perm/sec)   p_kst 7.272727e-07   p_cons 3.698182e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 1.226571e-01	ci left: 3.472343e-04	ci right 3.929550e-04	k: 1020	n:2760000
KS ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
ASTN2   2760000 perm   3704 sec   (745 perm/sec)   p_kst 7.246377e-07   p_cons 3.695652e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 1.224773e-01	ci left: 3.470306e-04	ci right 3.926527e-04	k: 1023	n:2770000
KS ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
ASTN2   2770000 perm   3729 sec   (743 perm/sec)   p_kst 7.220217e-07   p_cons 3.693141e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 1.222388e-01	ci left: 3.471771e-04	ci right 3.927231e-04	k: 1027	n:2780000
KS ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
ASTN2   2780000 perm   3756 sec   (740 perm/sec)   p_kst 7.194245e-07   p_cons 3.694245e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 1.219426e-01	ci left: 3.476701e-04	ci right 3.931623e-04	k: 1032	n:2790000
KS ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
ASTN2   2790000 perm   3780 sec   (738 perm/sec)   p_kst 7.168459e-07   p_cons 3.698925e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 1.217659e-01	ci left: 3.474672e-04	ci right 3.928622e-04	k: 1035	n:2800000
KS ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
ASTN2   2800000 perm   3803 sec   (736 perm/sec)   p_kst 7.142857e-07   p_cons 3.696429e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 1.216486e-01	ci left: 3.469208e-04	ci right 3.921976e-04	k: 1037	n:2810000
KS ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
ASTN2   2810000 perm   3827 sec   (734 perm/sec)   p_kst 7.117438e-07   p_cons 3.690391e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 1.213566e-01	ci left: 3.474097e-04	ci right 3.926337e-04	k: 1042	n:2820000
KS ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
ASTN2   2820000 perm   3851 sec   (732 perm/sec)   p_kst 7.092199e-07   p_cons 3.695035e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.212405e-01	ci left: 3.468674e-04	ci right 3.919744e-04	k: 1044	n:2830000
KS ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
ASTN2   2830000 perm   3876 sec   (730 perm/sec)   p_kst 7.067138e-07   p_cons 3.689046e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.208364e-01	ci left: 3.480362e-04	ci right 3.931336e-04	k: 1051	n:2840000
KS ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
ASTN2   2840000 perm   3901 sec   (728 perm/sec)   p_kst 7.042254e-07   p_cons 3.700704e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.206645e-01	ci left: 3.478358e-04	ci right 3.928386e-04	k: 1054	n:2850000
KS ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
ASTN2   2850000 perm   3925 sec   (726 perm/sec)   p_kst 7.017544e-07   p_cons 3.698246e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.203227e-01	ci left: 3.486543e-04	ci right 3.936261e-04	k: 1060	n:2860000
KS ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
ASTN2   2860000 perm   3953 sec   (724 perm/sec)   p_kst 6.993007e-07   p_cons 3.706294e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.200402e-01	ci left: 3.491293e-04	ci right 3.940491e-04	k: 1065	n:2870000
KS ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
ASTN2   2870000 perm   3978 sec   (721 perm/sec)   p_kst 6.968641e-07   p_cons 3.710801e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.198156e-01	ci left: 3.492643e-04	ci right 3.941114e-04	k: 1069	n:2880000
KS ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
ASTN2   2880000 perm   4002 sec   (720 perm/sec)   p_kst 6.944444e-07   p_cons 3.711806e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.193701e-01	ci left: 3.507411e-04	ci right 3.955986e-04	k: 1077	n:2890000
KS ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
ASTN2   2890000 perm   4028 sec   (717 perm/sec)   p_kst 6.920415e-07   p_cons 3.726644e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.190392e-01	ci left: 3.515389e-04	ci right 3.963651e-04	k: 1083	n:2900000
KS ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
ASTN2   2900000 perm   4054 sec   (715 perm/sec)   p_kst 6.896552e-07   p_cons 3.734483e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.188749e-01	ci left: 3.513312e-04	ci right 3.960646e-04	k: 1086	n:2910000
KS ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
ASTN2   2910000 perm   4079 sec   (713 perm/sec)   p_kst 6.872852e-07   p_cons 3.731959e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.187657e-01	ci left: 3.507925e-04	ci right 3.954135e-04	k: 1088	n:2920000
KS ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
ASTN2   2920000 perm   4104 sec   (712 perm/sec)   p_kst 6.849315e-07   p_cons 3.726027e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.184940e-01	ci left: 3.512511e-04	ci right 3.958211e-04	k: 1093	n:2930000
KS ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
ASTN2   2930000 perm   4131 sec   (709 perm/sec)   p_kst 6.825939e-07   p_cons 3.730375e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.183318e-01	ci left: 3.510466e-04	ci right 3.955254e-04	k: 1096	n:2940000
KS ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
ASTN2   2940000 perm   4158 sec   (707 perm/sec)   p_kst 6.802721e-07   p_cons 3.727891e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.180631e-01	ci left: 3.515014e-04	ci right 3.959296e-04	k: 1101	n:2950000
KS ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
ASTN2   2950000 perm   4183 sec   (705 perm/sec)   p_kst 6.779661e-07   p_cons 3.732203e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.179027e-01	ci left: 3.512975e-04	ci right 3.956354e-04	k: 1104	n:2960000
KS ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
ASTN2   2960000 perm   4208 sec   (703 perm/sec)   p_kst 6.756757e-07   p_cons 3.729730e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.175310e-01	ci left: 3.524022e-04	ci right 3.967296e-04	k: 1111	n:2970000
KS ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
ASTN2   2970000 perm   4233 sec   (702 perm/sec)   p_kst 6.734007e-07   p_cons 3.740741e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.173201e-01	ci left: 3.525225e-04	ci right 3.967800e-04	k: 1115	n:2980000
KS ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
ASTN2   2980000 perm   4258 sec   (700 perm/sec)   p_kst 6.711409e-07   p_cons 3.741611e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.172152e-01	ci left: 3.519928e-04	ci right 3.961414e-04	k: 1117	n:2990000
KS ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
ASTN2   2990000 perm   4283 sec   (698 perm/sec)   p_kst 6.688963e-07   p_cons 3.735786e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.171105e-01	ci left: 3.514666e-04	ci right 3.955072e-04	k: 1119	n:3000000
KS ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
ASTN2   3000000 perm   4309 sec   (696 perm/sec)   p_kst 6.666667e-07   p_cons 3.730000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.170583e-01	ci left: 3.506214e-04	ci right 3.945352e-04	k: 1120	n:3010000
KS ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
ASTN2   3010000 perm   4339 sec   (694 perm/sec)   p_kst 6.644518e-07   p_cons 3.720930e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.169020e-01	ci left: 3.504247e-04	ci right 3.942512e-04	k: 1123	n:3020000
KS ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
ASTN2   3020000 perm   4366 sec   (692 perm/sec)   p_kst 6.622517e-07   p_cons 3.718543e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.167982e-01	ci left: 3.499090e-04	ci right 3.936294e-04	k: 1125	n:3030000
KS ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
ASTN2   3030000 perm   4391 sec   (690 perm/sec)   p_kst 6.600660e-07   p_cons 3.712871e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.165397e-01	ci left: 3.503547e-04	ci right 3.940273e-04	k: 1130	n:3040000
KS ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
ASTN2   3040000 perm   4417 sec   (688 perm/sec)   p_kst 6.578947e-07   p_cons 3.717105e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.162829e-01	ci left: 3.507976e-04	ci right 3.944224e-04	k: 1135	n:3050000
KS ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
ASTN2   3050000 perm   4443 sec   (686 perm/sec)   p_kst 6.557377e-07   p_cons 3.721311e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.161297e-01	ci left: 3.506031e-04	ci right 3.941423e-04	k: 1138	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
ASTN2   3060000 perm   4470 sec   (685 perm/sec)   p_kst 6.535948e-07   p_cons 3.718954e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.160279e-01	ci left: 3.500936e-04	ci right 3.935289e-04	k: 1140	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
ASTN2   3070000 perm   4495 sec   (683 perm/sec)   p_kst 6.514658e-07   p_cons 3.713355e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.159771e-01	ci left: 3.492722e-04	ci right 3.925853e-04	k: 1141	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
ASTN2   3080000 perm   4521 sec   (681 perm/sec)   p_kst 6.493506e-07   p_cons 3.704545e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.157746e-01	ci left: 3.493989e-04	ci right 3.926468e-04	k: 1145	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
ASTN2   3090000 perm   4548 sec   (679 perm/sec)   p_kst 6.472492e-07   p_cons 3.705502e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.157241e-01	ci left: 3.485850e-04	ci right 3.917121e-04	k: 1146	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
ASTN2   3100000 perm   4574 sec   (678 perm/sec)   p_kst 6.451613e-07   p_cons 3.696774e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.153726e-01	ci left: 3.496499e-04	ci right 3.927684e-04	k: 1153	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
ASTN2   3110000 perm   4601 sec   (676 perm/sec)   p_kst 6.430868e-07   p_cons 3.707395e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.151731e-01	ci left: 3.497743e-04	ci right 3.928285e-04	k: 1157	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
ASTN2   3120000 perm   4627 sec   (674 perm/sec)   p_kst 6.410256e-07   p_cons 3.708333e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.148759e-01	ci left: 3.505186e-04	ci right 3.935455e-04	k: 1163	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
ASTN2   3130000 perm   4654 sec   (673 perm/sec)   p_kst 6.389776e-07   p_cons 3.715655e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.144830e-01	ci left: 3.518770e-04	ci right 3.949130e-04	k: 1171	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
ASTN2   3140000 perm   4681 sec   (671 perm/sec)   p_kst 6.369427e-07   p_cons 3.729299e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.144343e-01	ci left: 3.510683e-04	ci right 3.939859e-04	k: 1172	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
ASTN2   3150000 perm   4707 sec   (669 perm/sec)   p_kst 6.349206e-07   p_cons 3.720635e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.143369e-01	ci left: 3.505721e-04	ci right 3.933901e-04	k: 1174	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
ASTN2   3160000 perm   4734 sec   (668 perm/sec)   p_kst 6.329114e-07   p_cons 3.715190e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.140944e-01	ci left: 3.509985e-04	ci right 3.937714e-04	k: 1179	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
ASTN2   3170000 perm   4761 sec   (666 perm/sec)   p_kst 6.309148e-07   p_cons 3.719243e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.138534e-01	ci left: 3.514222e-04	ci right 3.941503e-04	k: 1184	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
ASTN2   3180000 perm   4789 sec   (664 perm/sec)   p_kst 6.289308e-07   p_cons 3.723270e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.137095e-01	ci left: 3.512342e-04	ci right 3.938819e-04	k: 1187	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
ASTN2   3190000 perm   4821 sec   (662 perm/sec)   p_kst 6.269592e-07   p_cons 3.721003e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.135186e-01	ci left: 3.513511e-04	ci right 3.939365e-04	k: 1191	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
ASTN2   3200000 perm   4847 sec   (660 perm/sec)   p_kst 6.250000e-07   p_cons 3.721875e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.132339e-01	ci left: 3.520727e-04	ci right 3.946314e-04	k: 1197	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
ASTN2   3210000 perm   4875 sec   (659 perm/sec)   p_kst 6.230530e-07   p_cons 3.728972e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.130924e-01	ci left: 3.518846e-04	ci right 3.943639e-04	k: 1200	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
ASTN2   3220000 perm   4902 sec   (657 perm/sec)   p_kst 6.211180e-07   p_cons 3.726708e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.128577e-01	ci left: 3.522995e-04	ci right 3.947347e-04	k: 1205	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
ASTN2   3230000 perm   4929 sec   (655 perm/sec)   p_kst 6.191950e-07   p_cons 3.730650e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.126710e-01	ci left: 3.524119e-04	ci right 3.947857e-04	k: 1209	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
ASTN2   3240000 perm   4957 sec   (654 perm/sec)   p_kst 6.172840e-07   p_cons 3.731481e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.126245e-01	ci left: 3.516265e-04	ci right 3.938874e-04	k: 1210	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
ASTN2   3250000 perm   4984 sec   (652 perm/sec)   p_kst 6.153846e-07   p_cons 3.723077e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.124853e-01	ci left: 3.514423e-04	ci right 3.936253e-04	k: 1213	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
ASTN2   3260000 perm   5013 sec   (650 perm/sec)   p_kst 6.134969e-07   p_cons 3.720859e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.123928e-01	ci left: 3.509619e-04	ci right 3.930503e-04	k: 1215	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
ASTN2   3270000 perm   5041 sec   (649 perm/sec)   p_kst 6.116208e-07   p_cons 3.715596e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.123467e-01	ci left: 3.501882e-04	ci right 3.921655e-04	k: 1216	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
ASTN2   3280000 perm   5068 sec   (647 perm/sec)   p_kst 6.097561e-07   p_cons 3.707317e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.121166e-01	ci left: 3.506009e-04	ci right 3.925359e-04	k: 1221	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
ASTN2   3290000 perm   5096 sec   (646 perm/sec)   p_kst 6.079027e-07   p_cons 3.711246e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.119335e-01	ci left: 3.507167e-04	ci right 3.925924e-04	k: 1225	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
ASTN2   3300000 perm   5124 sec   (644 perm/sec)   p_kst 6.060606e-07   p_cons 3.712121e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.117513e-01	ci left: 3.508317e-04	ci right 3.926486e-04	k: 1229	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
ASTN2   3310000 perm   5152 sec   (642 perm/sec)   p_kst 6.042296e-07   p_cons 3.712991e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.115701e-01	ci left: 3.509462e-04	ci right 3.927044e-04	k: 1233	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
ASTN2   3320000 perm   5180 sec   (641 perm/sec)   p_kst 6.024096e-07   p_cons 3.713855e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.114798e-01	ci left: 3.504761e-04	ci right 3.921425e-04	k: 1235	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
ASTN2   3330000 perm   5208 sec   (639 perm/sec)   p_kst 6.006006e-07   p_cons 3.708709e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.113897e-01	ci left: 3.500089e-04	ci right 3.915839e-04	k: 1237	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
ASTN2   3340000 perm   5236 sec   (638 perm/sec)   p_kst 5.988024e-07   p_cons 3.703593e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.111655e-01	ci left: 3.504151e-04	ci right 3.919490e-04	k: 1242	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
ASTN2   3350000 perm   5265 sec   (636 perm/sec)   p_kst 5.970149e-07   p_cons 3.707463e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.107651e-01	ci left: 3.519765e-04	ci right 3.935354e-04	k: 1251	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
ASTN2   3360000 perm   5293 sec   (635 perm/sec)   p_kst 5.952381e-07   p_cons 3.723214e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.105006e-01	ci left: 3.526632e-04	ci right 3.941973e-04	k: 1257	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
ASTN2   3370000 perm   5321 sec   (633 perm/sec)   p_kst 5.934718e-07   p_cons 3.729970e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.102816e-01	ci left: 3.530582e-04	ci right 3.945511e-04	k: 1262	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
ASTN2   3380000 perm   5349 sec   (632 perm/sec)   p_kst 5.917160e-07   p_cons 3.733728e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.099339e-01	ci left: 3.543117e-04	ci right 3.958121e-04	k: 1270	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
ASTN2   3390000 perm   5378 sec   (630 perm/sec)   p_kst 5.899705e-07   p_cons 3.746313e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.096324e-01	ci left: 3.552719e-04	ci right 3.967632e-04	k: 1277	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
ASTN2   3400000 perm   5406 sec   (629 perm/sec)   p_kst 5.882353e-07   p_cons 3.755882e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.093759e-01	ci left: 3.559414e-04	ci right 3.974074e-04	k: 1283	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
ASTN2   3410000 perm   5435 sec   (627 perm/sec)   p_kst 5.865103e-07   p_cons 3.762463e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.091636e-01	ci left: 3.563227e-04	ci right 3.977473e-04	k: 1288	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
ASTN2   3420000 perm   5464 sec   (626 perm/sec)   p_kst 5.847953e-07   p_cons 3.766082e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.089946e-01	ci left: 3.564182e-04	ci right 3.977857e-04	k: 1292	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
ASTN2   3430000 perm   5493 sec   (624 perm/sec)   p_kst 5.830904e-07   p_cons 3.766764e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.089946e-01	ci left: 3.553821e-04	ci right 3.966293e-04	k: 1292	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
ASTN2   3440000 perm   5522 sec   (623 perm/sec)   p_kst 5.813953e-07   p_cons 3.755814e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.088684e-01	ci left: 3.551978e-04	ci right 3.963729e-04	k: 1295	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
ASTN2   3450000 perm   5551 sec   (622 perm/sec)   p_kst 5.797101e-07   p_cons 3.753623e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.085339e-01	ci left: 3.564206e-04	ci right 3.976023e-04	k: 1303	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
ASTN2   3460000 perm   5580 sec   (620 perm/sec)   p_kst 5.780347e-07   p_cons 3.765896e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.084093e-01	ci left: 3.562345e-04	ci right 3.973445e-04	k: 1306	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
ASTN2   3470000 perm   5610 sec   (619 perm/sec)   p_kst 5.763689e-07   p_cons 3.763689e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.082851e-01	ci left: 3.560495e-04	ci right 3.970881e-04	k: 1309	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
ASTN2   3480000 perm   5639 sec   (617 perm/sec)   p_kst 5.747126e-07   p_cons 3.761494e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.080790e-01	ci left: 3.564233e-04	ci right 3.974217e-04	k: 1314	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
ASTN2   3490000 perm   5668 sec   (616 perm/sec)   p_kst 5.730659e-07   p_cons 3.765043e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.079969e-01	ci left: 3.559609e-04	ci right 3.968731e-04	k: 1316	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
ASTN2   3500000 perm   5698 sec   (614 perm/sec)   p_kst 5.714286e-07   p_cons 3.760000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.078333e-01	ci left: 3.560556e-04	ci right 3.969128e-04	k: 1320	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
ASTN2   3510000 perm   5727 sec   (613 perm/sec)   p_kst 5.698006e-07   p_cons 3.760684e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.076298e-01	ci left: 3.564263e-04	ci right 3.972439e-04	k: 1325	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
ASTN2   3520000 perm   5757 sec   (611 perm/sec)   p_kst 5.681818e-07   p_cons 3.764205e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.074678e-01	ci left: 3.565192e-04	ci right 3.972822e-04	k: 1329	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
ASTN2   3530000 perm   5787 sec   (610 perm/sec)   p_kst 5.665722e-07   p_cons 3.764873e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.074275e-01	ci left: 3.557870e-04	ci right 3.964500e-04	k: 1330	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
ASTN2   3540000 perm   5817 sec   (609 perm/sec)   p_kst 5.649718e-07   p_cons 3.757062e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.072262e-01	ci left: 3.561554e-04	ci right 3.967795e-04	k: 1335	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
ASTN2   3550000 perm   5847 sec   (607 perm/sec)   p_kst 5.633803e-07   p_cons 3.760563e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.070261e-01	ci left: 3.565218e-04	ci right 3.971070e-04	k: 1340	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
ASTN2   3560000 perm   5876 sec   (606 perm/sec)   p_kst 5.617978e-07   p_cons 3.764045e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.067478e-01	ci left: 3.574316e-04	ci right 3.980078e-04	k: 1347	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
ASTN2   3570000 perm   5905 sec   (605 perm/sec)   p_kst 5.602241e-07   p_cons 3.773109e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.064717e-01	ci left: 3.583363e-04	ci right 3.989035e-04	k: 1354	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
ASTN2   3580000 perm   5935 sec   (603 perm/sec)   p_kst 5.586592e-07   p_cons 3.782123e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.063540e-01	ci left: 3.581516e-04	ci right 3.986502e-04	k: 1357	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
ASTN2   3590000 perm   5964 sec   (602 perm/sec)   p_kst 5.571031e-07   p_cons 3.779944e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.062758e-01	ci left: 3.576975e-04	ci right 3.981132e-04	k: 1359	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
ASTN2   3600000 perm   5994 sec   (601 perm/sec)   p_kst 5.555556e-07   p_cons 3.775000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.061978e-01	ci left: 3.572459e-04	ci right 3.975791e-04	k: 1361	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
ASTN2   3610000 perm   6023 sec   (599 perm/sec)   p_kst 5.540166e-07   p_cons 3.770083e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.060034e-01	ci left: 3.576036e-04	ci right 3.978987e-04	k: 1366	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
ASTN2   3620000 perm   6053 sec   (598 perm/sec)   p_kst 5.524862e-07   p_cons 3.773481e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.058100e-01	ci left: 3.579594e-04	ci right 3.982164e-04	k: 1371	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
ASTN2   3630000 perm   6083 sec   (597 perm/sec)   p_kst 5.509642e-07   p_cons 3.776860e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.057330e-01	ci left: 3.575109e-04	ci right 3.976864e-04	k: 1373	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
ASTN2   3640000 perm   6113 sec   (595 perm/sec)   p_kst 5.494505e-07   p_cons 3.771978e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.056178e-01	ci left: 3.573317e-04	ci right 3.974405e-04	k: 1376	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
ASTN2   3650000 perm   6143 sec   (594 perm/sec)   p_kst 5.479452e-07   p_cons 3.769863e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.054647e-01	ci left: 3.574194e-04	ci right 3.974763e-04	k: 1380	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
ASTN2   3660000 perm   6174 sec   (593 perm/sec)   p_kst 5.464481e-07   p_cons 3.770492e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.054648e-01	ci left: 3.564455e-04	ci right 3.963933e-04	k: 1380	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
ASTN2   3670000 perm   6205 sec   (591 perm/sec)   p_kst 5.449591e-07   p_cons 3.760218e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.053124e-01	ci left: 3.565352e-04	ci right 3.964318e-04	k: 1384	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
ASTN2   3680000 perm   6239 sec   (590 perm/sec)   p_kst 5.434783e-07   p_cons 3.760870e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.050850e-01	ci left: 3.571522e-04	ci right 3.970262e-04	k: 1390	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
ASTN2   3690000 perm   6270 sec   (588 perm/sec)   p_kst 5.420054e-07   p_cons 3.766938e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.047466e-01	ci left: 3.585556e-04	ci right 3.984494e-04	k: 1399	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
ASTN2   3700000 perm   6301 sec   (587 perm/sec)   p_kst 5.405405e-07   p_cons 3.781081e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.044856e-01	ci left: 3.594265e-04	ci right 3.993115e-04	k: 1406	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
ASTN2   3710000 perm   6332 sec   (586 perm/sec)   p_kst 5.390836e-07   p_cons 3.789757e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.043374e-01	ci left: 3.595075e-04	ci right 3.993414e-04	k: 1410	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
ASTN2   3720000 perm   6364 sec   (585 perm/sec)   p_kst 5.376344e-07   p_cons 3.790323e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.041530e-01	ci left: 3.598492e-04	ci right 3.996462e-04	k: 1415	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
ASTN2   3730000 perm   6395 sec   (583 perm/sec)   p_kst 5.361930e-07   p_cons 3.793566e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.038965e-01	ci left: 3.607100e-04	ci right 4.004980e-04	k: 1422	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
ASTN2   3740000 perm   6426 sec   (582 perm/sec)   p_kst 5.347594e-07   p_cons 3.802139e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.037508e-01	ci left: 3.607871e-04	ci right 4.005243e-04	k: 1426	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
ASTN2   3750000 perm   6458 sec   (581 perm/sec)   p_kst 5.333333e-07   p_cons 3.802667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.036782e-01	ci left: 3.603457e-04	ci right 4.000048e-04	k: 1428	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
ASTN2   3760000 perm   6490 sec   (579 perm/sec)   p_kst 5.319149e-07   p_cons 3.797872e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.036420e-01	ci left: 3.596482e-04	ci right 3.992159e-04	k: 1429	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
ASTN2   3770000 perm   6527 sec   (578 perm/sec)   p_kst 5.305040e-07   p_cons 3.790451e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.035334e-01	ci left: 3.594699e-04	ci right 3.989740e-04	k: 1432	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
ASTN2   3780000 perm   6559 sec   (576 perm/sec)   p_kst 5.291005e-07   p_cons 3.788360e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.034613e-01	ci left: 3.590354e-04	ci right 3.984627e-04	k: 1434	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
ASTN2   3790000 perm   6590 sec   (575 perm/sec)   p_kst 5.277045e-07   p_cons 3.783641e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.034253e-01	ci left: 3.583470e-04	ci right 3.976841e-04	k: 1435	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
ASTN2   3800000 perm   6622 sec   (574 perm/sec)   p_kst 5.263158e-07   p_cons 3.776316e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.032457e-01	ci left: 3.586848e-04	ci right 3.979865e-04	k: 1440	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
ASTN2   3810000 perm   6654 sec   (573 perm/sec)   p_kst 5.249344e-07   p_cons 3.779528e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.032099e-01	ci left: 3.580009e-04	ci right 3.972132e-04	k: 1441	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
ASTN2   3820000 perm   6686 sec   (571 perm/sec)   p_kst 5.235602e-07   p_cons 3.772251e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.031384e-01	ci left: 3.575749e-04	ci right 3.967118e-04	k: 1443	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
ASTN2   3830000 perm   6719 sec   (570 perm/sec)   p_kst 5.221932e-07   p_cons 3.767624e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.028893e-01	ci left: 3.584196e-04	ci right 3.975485e-04	k: 1450	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
ASTN2   3840000 perm   6751 sec   (569 perm/sec)   p_kst 5.208333e-07   p_cons 3.776042e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.026420e-01	ci left: 3.592601e-04	ci right 3.983808e-04	k: 1457	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
ASTN2   3850000 perm   6783 sec   (568 perm/sec)   p_kst 5.194805e-07   p_cons 3.784416e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.024314e-01	ci left: 3.598440e-04	ci right 3.989430e-04	k: 1463	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
ASTN2   3860000 perm   6815 sec   (566 perm/sec)   p_kst 5.181347e-07   p_cons 3.790155e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.022917e-01	ci left: 3.599213e-04	ci right 3.989722e-04	k: 1467	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
ASTN2   3870000 perm   6847 sec   (565 perm/sec)   p_kst 5.167959e-07   p_cons 3.790698e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.022570e-01	ci left: 3.592448e-04	ci right 3.982082e-04	k: 1468	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
ASTN2   3880000 perm   6880 sec   (564 perm/sec)   p_kst 5.154639e-07   p_cons 3.783505e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 1.021180e-01	ci left: 3.593233e-04	ci right 3.982391e-04	k: 1472	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
ASTN2   3890000 perm   6912 sec   (563 perm/sec)   p_kst 5.141388e-07   p_cons 3.784062e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 1.020142e-01	ci left: 3.591515e-04	ci right 3.980068e-04	k: 1475	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
ASTN2   3900000 perm   6945 sec   (562 perm/sec)   p_kst 5.128205e-07   p_cons 3.782051e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 1.019452e-01	ci left: 3.587314e-04	ci right 3.975135e-04	k: 1477	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
ASTN2   3910000 perm   6977 sec   (560 perm/sec)   p_kst 5.115090e-07   p_cons 3.777494e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 1.017046e-01	ci left: 3.595565e-04	ci right 3.983306e-04	k: 1484	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
ASTN2   3920000 perm   7010 sec   (559 perm/sec)   p_kst 5.102041e-07   p_cons 3.785714e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 1.016704e-01	ci left: 3.588896e-04	ci right 3.975779e-04	k: 1485	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
ASTN2   3930000 perm   7043 sec   (558 perm/sec)   p_kst 5.089059e-07   p_cons 3.778626e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 1.014317e-01	ci left: 3.597103e-04	ci right 3.983906e-04	k: 1492	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
ASTN2   3940000 perm   7076 sec   (557 perm/sec)   p_kst 5.076142e-07   p_cons 3.786802e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 1.013300e-01	ci left: 3.595398e-04	ci right 3.981608e-04	k: 1495	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
ASTN2   3950000 perm   7109 sec   (556 perm/sec)   p_kst 5.063291e-07   p_cons 3.784810e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 1.011948e-01	ci left: 3.596164e-04	ci right 3.981910e-04	k: 1499	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
ASTN2   3960000 perm   7142 sec   (554 perm/sec)   p_kst 5.050505e-07   p_cons 3.785354e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 1.010937e-01	ci left: 3.594471e-04	ci right 3.979627e-04	k: 1502	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
ASTN2   3970000 perm   7175 sec   (553 perm/sec)   p_kst 5.037783e-07   p_cons 3.783375e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 1.009260e-01	ci left: 3.597686e-04	ci right 3.982508e-04	k: 1507	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
ASTN2   3980000 perm   7208 sec   (552 perm/sec)   p_kst 5.025126e-07   p_cons 3.786432e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 1.007591e-01	ci left: 3.600884e-04	ci right 3.985374e-04	k: 1512	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
ASTN2   3990000 perm   7241 sec   (551 perm/sec)   p_kst 5.012531e-07   p_cons 3.789474e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 1.004937e-01	ci left: 3.611379e-04	ci right 3.995914e-04	k: 1520	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
ASTN2   4000000 perm   7274 sec   (550 perm/sec)   p_kst 5.000000e-07   p_cons 3.800000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 1.004607e-01	ci left: 3.604804e-04	ci right 3.988506e-04	k: 1521	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
ASTN2   4010000 perm   7308 sec   (549 perm/sec)   p_kst 4.987531e-07   p_cons 3.793017e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 1.003290e-01	ci left: 3.605537e-04	ci right 3.988784e-04	k: 1525	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
ASTN2   4020000 perm   7342 sec   (548 perm/sec)   p_kst 4.975124e-07   p_cons 3.793532e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 1.001977e-01	ci left: 3.606267e-04	ci right 3.989061e-04	k: 1529	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
ASTN2   4030000 perm   7375 sec   (546 perm/sec)   p_kst 4.962779e-07   p_cons 3.794045e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 1.001650e-01	ci left: 3.599754e-04	ci right 3.981724e-04	k: 1530	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
ASTN2   4040000 perm   7409 sec   (545 perm/sec)   p_kst 4.950495e-07   p_cons 3.787129e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 1.000019e-01	ci left: 3.602902e-04	ci right 3.984547e-04	k: 1535	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
ASTN2   4050000 perm   7443 sec   (544 perm/sec)   p_kst 4.938272e-07   p_cons 3.790123e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 9.983947e-02	ci left: 3.606036e-04	ci right 3.987356e-04	k: 1540	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
ASTN2   4060000 perm   7477 sec   (543 perm/sec)   p_kst 4.926108e-07   p_cons 3.793103e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 9.964564e-02	ci left: 3.611550e-04	ci right 3.992669e-04	k: 1546	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
ASTN2   4070000 perm   7511 sec   (542 perm/sec)   p_kst 4.914005e-07   p_cons 3.798526e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 9.951706e-02	ci left: 3.612258e-04	ci right 3.992931e-04	k: 1550	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
ASTN2   4080000 perm   7545 sec   (541 perm/sec)   p_kst 4.901961e-07   p_cons 3.799020e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 9.942097e-02	ci left: 3.610578e-04	ci right 3.990685e-04	k: 1553	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
ASTN2   4090000 perm   7578 sec   (540 perm/sec)   p_kst 4.889976e-07   p_cons 3.797066e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 9.935707e-02	ci left: 3.606529e-04	ci right 3.985951e-04	k: 1555	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
ASTN2   4100000 perm   7612 sec   (539 perm/sec)   p_kst 4.878049e-07   p_cons 3.792683e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 9.929330e-02	ci left: 3.602499e-04	ci right 3.981240e-04	k: 1557	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
ASTN2   4110000 perm   7646 sec   (538 perm/sec)   p_kst 4.866180e-07   p_cons 3.788321e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 9.907095e-02	ci left: 3.610324e-04	ci right 3.988988e-04	k: 1564	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
ASTN2   4120000 perm   7680 sec   (536 perm/sec)   p_kst 4.854369e-07   p_cons 3.796117e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 9.891306e-02	ci left: 3.613389e-04	ci right 3.991736e-04	k: 1569	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
ASTN2   4130000 perm   7714 sec   (535 perm/sec)   p_kst 4.842615e-07   p_cons 3.799031e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 9.881870e-02	ci left: 3.611728e-04	ci right 3.989520e-04	k: 1572	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
ASTN2   4140000 perm   7748 sec   (534 perm/sec)   p_kst 4.830918e-07   p_cons 3.797101e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 9.866200e-02	ci left: 3.614776e-04	ci right 3.992252e-04	k: 1577	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
ASTN2   4150000 perm   7782 sec   (533 perm/sec)   p_kst 4.819277e-07   p_cons 3.800000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 9.850605e-02	ci left: 3.617810e-04	ci right 3.994971e-04	k: 1582	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
ASTN2   4160000 perm   7816 sec   (532 perm/sec)   p_kst 4.807692e-07   p_cons 3.802885e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 9.841285e-02	ci left: 3.616151e-04	ci right 3.992762e-04	k: 1585	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
ASTN2   4170000 perm   7850 sec   (531 perm/sec)   p_kst 4.796163e-07   p_cons 3.800959e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 9.838187e-02	ci left: 3.609833e-04	ci right 3.985661e-04	k: 1586	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
ASTN2   4180000 perm   7884 sec   (530 perm/sec)   p_kst 4.784689e-07   p_cons 3.794258e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 9.825812e-02	ci left: 3.610530e-04	ci right 3.985930e-04	k: 1590	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
ASTN2   4190000 perm   7921 sec   (529 perm/sec)   p_kst 4.773270e-07   p_cons 3.794749e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 9.810407e-02	ci left: 3.613546e-04	ci right 3.988636e-04	k: 1595	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
ASTN2   4200000 perm   7956 sec   (528 perm/sec)   p_kst 4.761905e-07   p_cons 3.797619e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 9.807339e-02	ci left: 3.607280e-04	ci right 3.981596e-04	k: 1596	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
ASTN2   4210000 perm   7991 sec   (527 perm/sec)   p_kst 4.750594e-07   p_cons 3.790974e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 9.801205e-02	ci left: 3.603355e-04	ci right 3.977016e-04	k: 1598	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
ASTN2   4220000 perm   8026 sec   (526 perm/sec)   p_kst 4.739336e-07   p_cons 3.786730e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 9.798145e-02	ci left: 3.597142e-04	ci right 3.970036e-04	k: 1599	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
ASTN2   4230000 perm   8062 sec   (525 perm/sec)   p_kst 4.728132e-07   p_cons 3.780142e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 9.785920e-02	ci left: 3.597861e-04	ci right 3.970338e-04	k: 1603	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
ASTN2   4240000 perm   8099 sec   (524 perm/sec)   p_kst 4.716981e-07   p_cons 3.780660e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 9.779827e-02	ci left: 3.593986e-04	ci right 3.965817e-04	k: 1605	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
ASTN2   4250000 perm   8134 sec   (522 perm/sec)   p_kst 4.705882e-07   p_cons 3.776471e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 9.764637e-02	ci left: 3.597000e-04	ci right 3.968532e-04	k: 1610	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
ASTN2   4260000 perm   8169 sec   (521 perm/sec)   p_kst 4.694836e-07   p_cons 3.779343e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 9.755559e-02	ci left: 3.595430e-04	ci right 3.966435e-04	k: 1613	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
ASTN2   4270000 perm   8205 sec   (520 perm/sec)   p_kst 4.683841e-07   p_cons 3.777518e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 9.749522e-02	ci left: 3.591589e-04	ci right 3.961954e-04	k: 1615	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
ASTN2   4280000 perm   8240 sec   (519 perm/sec)   p_kst 4.672897e-07   p_cons 3.773364e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 9.719489e-02	ci left: 3.605959e-04	ci right 3.976596e-04	k: 1625	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
ASTN2   4290000 perm   8275 sec   (518 perm/sec)   p_kst 4.662005e-07   p_cons 3.787879e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 9.704578e-02	ci left: 3.608919e-04	ci right 3.979258e-04	k: 1630	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
ASTN2   4300000 perm   8310 sec   (517 perm/sec)   p_kst 4.651163e-07   p_cons 3.790698e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 9.698635e-02	ci left: 3.605073e-04	ci right 3.974779e-04	k: 1632	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
ASTN2   4310000 perm   8346 sec   (516 perm/sec)   p_kst 4.640371e-07   p_cons 3.786543e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 9.683820e-02	ci left: 3.608022e-04	ci right 3.977432e-04	k: 1637	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
ASTN2   4320000 perm   8382 sec   (515 perm/sec)   p_kst 4.629630e-07   p_cons 3.789352e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 9.674965e-02	ci left: 3.606450e-04	ci right 3.975343e-04	k: 1640	n:4330000
KS ci ratio: 1.959999e+00	ci left: 1.428804e-07	ci right 2.024773e-06	k: 3	n:4330000
ASTN2   4330000 perm   8417 sec   (514 perm/sec)   p_kst 6.928406e-07   p_cons 3.787529e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 9.666135e-02	ci left: 3.604885e-04	ci right 3.973262e-04	k: 1643	n:4340000
KS ci ratio: 1.959999e+00	ci left: 1.425512e-07	ci right 2.020108e-06	k: 3	n:4340000
ASTN2   4340000 perm   8452 sec   (513 perm/sec)   p_kst 6.912442e-07   p_cons 3.785714e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 9.654397e-02	ci left: 3.605572e-04	ci right 3.973546e-04	k: 1647	n:4350000
KS ci ratio: 1.959999e+00	ci left: 1.422235e-07	ci right 2.015464e-06	k: 3	n:4350000
ASTN2   4350000 perm   8488 sec   (512 perm/sec)   p_kst 6.896552e-07   p_cons 3.786207e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 9.633954e-02	ci left: 3.612970e-04	ci right 3.980874e-04	k: 1654	n:4360000
KS ci ratio: 1.959999e+00	ci left: 1.418973e-07	ci right 2.010841e-06	k: 3	n:4360000
ASTN2   4360000 perm   8524 sec   (511 perm/sec)   p_kst 6.880734e-07   p_cons 3.793578e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 9.628140e-02	ci left: 3.609169e-04	ci right 3.976452e-04	k: 1656	n:4370000
KS ci ratio: 1.959999e+00	ci left: 1.415726e-07	ci right 2.006240e-06	k: 3	n:4370000
ASTN2   4370000 perm   8560 sec   (510 perm/sec)   p_kst 6.864989e-07   p_cons 3.789474e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 9.607864e-02	ci left: 3.616526e-04	ci right 3.983739e-04	k: 1663	n:4380000
KS ci ratio: 1.959999e+00	ci left: 1.412494e-07	ci right 2.001659e-06	k: 3	n:4380000
ASTN2   4380000 perm   8596 sec   (510 perm/sec)   p_kst 6.849315e-07   p_cons 3.796804e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 9.587715e-02	ci left: 3.623850e-04	ci right 3.990992e-04	k: 1670	n:4390000
KS ci ratio: 1.959999e+00	ci left: 1.409276e-07	ci right 1.997100e-06	k: 3	n:4390000
ASTN2   4390000 perm   8633 sec   (508 perm/sec)   p_kst 6.833713e-07   p_cons 3.804100e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 9.573402e-02	ci left: 3.626706e-04	ci right 3.993558e-04	k: 1675	n:4400000
KS ci ratio: 1.959999e+00	ci left: 1.406073e-07	ci right 1.992561e-06	k: 3	n:4400000
ASTN2   4400000 perm   8669 sec   (508 perm/sec)   p_kst 6.818182e-07   p_cons 3.806818e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 9.559152e-02	ci left: 3.629549e-04	ci right 3.996111e-04	k: 1680	n:4410000
KS ci ratio: 1.959999e+00	ci left: 1.402885e-07	ci right 1.988042e-06	k: 3	n:4410000
ASTN2   4410000 perm   8706 sec   (507 perm/sec)   p_kst 6.802721e-07   p_cons 3.809524e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 9.536482e-02	ci left: 3.639004e-04	ci right 4.005602e-04	k: 1688	n:4420000
KS ci ratio: 1.959999e+00	ci left: 1.399711e-07	ci right 1.983545e-06	k: 3	n:4420000
ASTN2   4420000 perm   8742 sec   (506 perm/sec)   p_kst 6.787330e-07   p_cons 3.819005e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 9.525210e-02	ci left: 3.639604e-04	ci right 4.005804e-04	k: 1692	n:4430000
KS ci ratio: 1.959999e+00	ci left: 1.396551e-07	ci right 1.979067e-06	k: 3	n:4430000
ASTN2   4430000 perm   8778 sec   (505 perm/sec)   p_kst 6.772009e-07   p_cons 3.819413e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 9.522401e-02	ci left: 3.633605e-04	ci right 3.999088e-04	k: 1693	n:4440000
KS ci ratio: 1.959999e+00	ci left: 1.393406e-07	ci right 1.974610e-06	k: 3	n:4440000
ASTN2   4440000 perm   8815 sec   (504 perm/sec)   p_kst 6.756757e-07   p_cons 3.813063e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 9.508377e-02	ci left: 3.636408e-04	ci right 4.001604e-04	k: 1698	n:4450000
KS ci ratio: 1.959999e+00	ci left: 1.390275e-07	ci right 1.970172e-06	k: 3	n:4450000
ASTN2   4450000 perm   8852 sec   (503 perm/sec)   p_kst 6.741573e-07   p_cons 3.815730e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 9.505583e-02	ci left: 3.630444e-04	ci right 3.994928e-04	k: 1699	n:4460000
KS ci ratio: 1.959999e+00	ci left: 1.387157e-07	ci right 1.965755e-06	k: 3	n:4460000
ASTN2   4460000 perm   8889 sec   (502 perm/sec)   p_kst 6.726457e-07   p_cons 3.809417e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 9.480515e-02	ci left: 3.641978e-04	ci right 4.006603e-04	k: 1708	n:4470000
KS ci ratio: 1.959999e+00	ci left: 1.384054e-07	ci right 1.961357e-06	k: 3	n:4470000
ASTN2   4470000 perm   8925 sec   (501 perm/sec)   p_kst 6.711409e-07   p_cons 3.821029e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 9.474975e-02	ci left: 3.638207e-04	ci right 4.002229e-04	k: 1710	n:4480000
KS ci ratio: 1.959999e+00	ci left: 1.380965e-07	ci right 1.956979e-06	k: 3	n:4480000
ASTN2   4480000 perm   8963 sec   (500 perm/sec)   p_kst 6.696429e-07   p_cons 3.816964e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 9.466680e-02	ci left: 3.636628e-04	ci right 4.000155e-04	k: 1713	n:4490000
KS ci ratio: 1.959999e+00	ci left: 1.377889e-07	ci right 1.952621e-06	k: 3	n:4490000
ASTN2   4490000 perm   9000 sec   (499 perm/sec)   p_kst 6.681514e-07   p_cons 3.815145e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 9.458407e-02	ci left: 3.635055e-04	ci right 3.998091e-04	k: 1716	n:4500000
KS ci ratio: 1.959999e+00	ci left: 1.374827e-07	ci right 1.948282e-06	k: 3	n:4500000
ASTN2   4500000 perm   9037 sec   (498 perm/sec)   p_kst 6.666667e-07   p_cons 3.813333e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 9.450156e-02	ci left: 3.633490e-04	ci right 3.996035e-04	k: 1719	n:4510000
KS ci ratio: 1.959999e+00	ci left: 1.371779e-07	ci right 1.943962e-06	k: 3	n:4510000
ASTN2   4510000 perm   9075 sec   (497 perm/sec)   p_kst 6.651885e-07   p_cons 3.811530e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 9.430981e-02	ci left: 3.640572e-04	ci right 4.003046e-04	k: 1726	n:4520000
KS ci ratio: 1.959999e+00	ci left: 1.368744e-07	ci right 1.939661e-06	k: 3	n:4520000
ASTN2   4520000 perm   9112 sec   (496 perm/sec)   p_kst 6.637168e-07   p_cons 3.818584e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 9.422801e-02	ci left: 3.639002e-04	ci right 4.000988e-04	k: 1729	n:4530000
KS ci ratio: 1.959999e+00	ci left: 1.365722e-07	ci right 1.935379e-06	k: 3	n:4530000
ASTN2   4530000 perm   9150 sec   (495 perm/sec)   p_kst 6.622517e-07   p_cons 3.816777e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 9.403792e-02	ci left: 3.646042e-04	ci right 4.007957e-04	k: 1736	n:4540000
KS ci ratio: 1.959999e+00	ci left: 1.362714e-07	ci right 1.931116e-06	k: 3	n:4540000
ASTN2   4540000 perm   9187 sec   (494 perm/sec)   p_kst 6.607930e-07   p_cons 3.823789e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 9.401089e-02	ci left: 3.640175e-04	ci right 4.001397e-04	k: 1737	n:4550000
KS ci ratio: 1.959999e+00	ci left: 1.359719e-07	ci right 1.926872e-06	k: 3	n:4550000
ASTN2   4550000 perm   9224 sec   (493 perm/sec)   p_kst 6.593407e-07   p_cons 3.817582e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 9.387594e-02	ci left: 3.642900e-04	ci right 4.003845e-04	k: 1742	n:4560000
KS ci ratio: 1.959999e+00	ci left: 1.356737e-07	ci right 1.922646e-06	k: 3	n:4560000
ASTN2   4560000 perm   9262 sec   (492 perm/sec)   p_kst 6.578947e-07   p_cons 3.820175e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 9.374157e-02	ci left: 3.645613e-04	ci right 4.006281e-04	k: 1747	n:4570000
KS ci ratio: 1.959999e+00	ci left: 1.353769e-07	ci right 1.918439e-06	k: 3	n:4570000
ASTN2   4570000 perm   9299 sec   (491 perm/sec)   p_kst 6.564551e-07   p_cons 3.822757e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 9.363450e-02	ci left: 3.646182e-04	ci right 4.006472e-04	k: 1751	n:4580000
KS ci ratio: 1.959999e+00	ci left: 1.350813e-07	ci right 1.914251e-06	k: 3	n:4580000
ASTN2   4580000 perm   9336 sec   (491 perm/sec)   p_kst 6.550218e-07   p_cons 3.823144e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 9.352779e-02	ci left: 3.646749e-04	ci right 4.006662e-04	k: 1755	n:4590000
KS ci ratio: 1.959999e+00	ci left: 1.347870e-07	ci right 1.910080e-06	k: 3	n:4590000
ASTN2   4590000 perm   9374 sec   (490 perm/sec)   p_kst 6.535948e-07   p_cons 3.823529e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 9.339491e-02	ci left: 3.649436e-04	ci right 4.009075e-04	k: 1760	n:4600000
KS ci ratio: 1.959999e+00	ci left: 1.344940e-07	ci right 1.905928e-06	k: 3	n:4600000
ASTN2   4600000 perm   9412 sec   (489 perm/sec)   p_kst 6.521739e-07   p_cons 3.826087e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 9.328902e-02	ci left: 3.649994e-04	ci right 4.009258e-04	k: 1764	n:4610000
KS ci ratio: 1.959999e+00	ci left: 1.342022e-07	ci right 1.901793e-06	k: 3	n:4610000
ASTN2   4610000 perm   9451 sec   (488 perm/sec)   p_kst 6.507592e-07   p_cons 3.826464e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 9.310454e-02	ci left: 3.656892e-04	ci right 4.016084e-04	k: 1771	n:4620000
KS ci ratio: 1.959999e+00	ci left: 1.339117e-07	ci right 1.897677e-06	k: 3	n:4620000
ASTN2   4620000 perm   9488 sec   (487 perm/sec)   p_kst 6.493506e-07   p_cons 3.833333e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 9.307831e-02	ci left: 3.651104e-04	ci right 4.009621e-04	k: 1772	n:4630000
KS ci ratio: 1.959999e+00	ci left: 1.336225e-07	ci right 1.893578e-06	k: 3	n:4630000
ASTN2   4630000 perm   9527 sec   (486 perm/sec)   p_kst 6.479482e-07   p_cons 3.827214e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 9.294733e-02	ci left: 3.653760e-04	ci right 4.012006e-04	k: 1777	n:4640000
KS ci ratio: 1.959999e+00	ci left: 1.333345e-07	ci right 1.889497e-06	k: 3	n:4640000
ASTN2   4640000 perm   9565 sec   (485 perm/sec)   p_kst 6.465517e-07   p_cons 3.829741e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 9.281690e-02	ci left: 3.656405e-04	ci right 4.014380e-04	k: 1782	n:4650000
KS ci ratio: 1.959999e+00	ci left: 1.330478e-07	ci right 1.885434e-06	k: 3	n:4650000
ASTN2   4650000 perm   9604 sec   (484 perm/sec)   p_kst 6.451613e-07   p_cons 3.832258e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 9.268702e-02	ci left: 3.659040e-04	ci right 4.016744e-04	k: 1787	n:4660000
KS ci ratio: 1.959999e+00	ci left: 1.327623e-07	ci right 1.881388e-06	k: 3	n:4660000
ASTN2   4660000 perm   9642 sec   (483 perm/sec)   p_kst 6.437768e-07   p_cons 3.834764e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 9.260937e-02	ci left: 3.657480e-04	ci right 4.014715e-04	k: 1790	n:4670000
KS ci ratio: 1.959999e+00	ci left: 1.324780e-07	ci right 1.877359e-06	k: 3	n:4670000
ASTN2   4670000 perm   9681 sec   (482 perm/sec)   p_kst 6.423983e-07   p_cons 3.832976e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 9.255772e-02	ci left: 3.653839e-04	ci right 4.010509e-04	k: 1792	n:4680000
KS ci ratio: 1.959999e+00	ci left: 1.321949e-07	ci right 1.873348e-06	k: 3	n:4680000
ASTN2   4680000 perm   9722 sec   (481 perm/sec)   p_kst 6.410256e-07   p_cons 3.829060e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 9.232625e-02	ci left: 3.664795e-04	ci right 4.021591e-04	k: 1801	n:4690000
KS ci ratio: 1.959999e+00	ci left: 1.319131e-07	ci right 1.869353e-06	k: 3	n:4690000
ASTN2   4690000 perm   9761 sec   (480 perm/sec)   p_kst 6.396588e-07   p_cons 3.840085e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 9.227507e-02	ci left: 3.661154e-04	ci right 4.017388e-04	k: 1803	n:4700000
KS ci ratio: 1.959999e+00	ci left: 1.316324e-07	ci right 1.865376e-06	k: 3	n:4700000
ASTN2   4700000 perm   9800 sec   (480 perm/sec)   p_kst 6.382979e-07   p_cons 3.836170e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 9.217294e-02	ci left: 3.661678e-04	ci right 4.017547e-04	k: 1807	n:4710000
KS ci ratio: 1.959999e+00	ci left: 1.313529e-07	ci right 1.861416e-06	k: 3	n:4710000
ASTN2   4710000 perm   9838 sec   (479 perm/sec)   p_kst 6.369427e-07   p_cons 3.836518e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 9.214749e-02	ci left: 3.655990e-04	ci right 4.011203e-04	k: 1808	n:4720000
KS ci ratio: 1.959999e+00	ci left: 1.310746e-07	ci right 1.857472e-06	k: 3	n:4720000
ASTN2   4720000 perm   9878 sec   (478 perm/sec)   p_kst 6.355932e-07   p_cons 3.830508e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 9.199503e-02	ci left: 3.660653e-04	ci right 4.015700e-04	k: 1814	n:4730000
KS ci ratio: 1.959999e+00	ci left: 1.307975e-07	ci right 1.853545e-06	k: 3	n:4730000
ASTN2   4730000 perm   9918 sec   (477 perm/sec)   p_kst 6.342495e-07   p_cons 3.835095e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 9.189382e-02	ci left: 3.661175e-04	ci right 4.015860e-04	k: 1818	n:4740000
KS ci ratio: 1.959999e+00	ci left: 1.305216e-07	ci right 1.849635e-06	k: 3	n:4740000
ASTN2   4740000 perm   9957 sec   (476 perm/sec)   p_kst 6.329114e-07   p_cons 3.835443e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 9.181815e-02	ci left: 3.659638e-04	ci right 4.013867e-04	k: 1821	n:4750000
KS ci ratio: 1.959999e+00	ci left: 1.302468e-07	ci right 1.845741e-06	k: 3	n:4750000
ASTN2   4750000 perm   9997 sec   (475 perm/sec)   p_kst 6.315789e-07   p_cons 3.833684e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 9.166732e-02	ci left: 3.664266e-04	ci right 4.018328e-04	k: 1827	n:4760000
KS ci ratio: 1.959999e+00	ci left: 1.299732e-07	ci right 1.841863e-06	k: 3	n:4760000
ASTN2   4760000 perm   10036 sec   (474 perm/sec)   p_kst 6.302521e-07   p_cons 3.838235e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 9.159220e-02	ci left: 3.662729e-04	ci right 4.016338e-04	k: 1830	n:4770000
KS ci ratio: 1.959999e+00	ci left: 1.297007e-07	ci right 1.838002e-06	k: 3	n:4770000
ASTN2   4770000 perm   10076 sec   (473 perm/sec)   p_kst 6.289308e-07   p_cons 3.836478e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 9.139272e-02	ci left: 3.671420e-04	ci right 4.025054e-04	k: 1838	n:4780000
KS ci ratio: 1.959999e+00	ci left: 1.294293e-07	ci right 1.834156e-06	k: 3	n:4780000
ASTN2   4780000 perm   10115 sec   (473 perm/sec)   p_kst 6.276151e-07   p_cons 3.845188e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 9.126872e-02	ci left: 3.673955e-04	ci right 4.027328e-04	k: 1843	n:4790000
KS ci ratio: 1.959999e+00	ci left: 1.291591e-07	ci right 1.830327e-06	k: 3	n:4790000
ASTN2   4790000 perm   10155 sec   (472 perm/sec)   p_kst 6.263048e-07   p_cons 3.847599e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 9.114522e-02	ci left: 3.676480e-04	ci right 4.029592e-04	k: 1848	n:4800000
KS ci ratio: 1.959999e+00	ci left: 1.288900e-07	ci right 1.826514e-06	k: 3	n:4800000
ASTN2   4800000 perm   10195 sec   (471 perm/sec)   p_kst 6.250000e-07   p_cons 3.850000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 9.107138e-02	ci left: 3.674932e-04	ci right 4.027594e-04	k: 1851	n:4810000
KS ci ratio: 1.959999e+00	ci left: 1.286221e-07	ci right 1.822717e-06	k: 3	n:4810000
ASTN2   4810000 perm   10234 sec   (470 perm/sec)   p_kst 6.237006e-07   p_cons 3.848233e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 9.092419e-02	ci left: 3.679472e-04	ci right 4.031969e-04	k: 1857	n:4820000
KS ci ratio: 1.959999e+00	ci left: 1.283552e-07	ci right 1.818935e-06	k: 3	n:4820000
ASTN2   4820000 perm   10274 sec   (469 perm/sec)   p_kst 6.224066e-07   p_cons 3.852697e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 9.082647e-02	ci left: 3.679948e-04	ci right 4.032091e-04	k: 1861	n:4830000
KS ci ratio: 1.959999e+00	ci left: 1.280895e-07	ci right 1.815169e-06	k: 3	n:4830000
ASTN2   4830000 perm   10313 sec   (468 perm/sec)   p_kst 6.211180e-07   p_cons 3.853002e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 9.072907e-02	ci left: 3.680421e-04	ci right 4.032212e-04	k: 1865	n:4840000
KS ci ratio: 1.959999e+00	ci left: 1.278248e-07	ci right 1.811419e-06	k: 3	n:4840000
ASTN2   4840000 perm   10353 sec   (468 perm/sec)   p_kst 6.198347e-07   p_cons 3.853306e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 9.058354e-02	ci left: 3.684924e-04	ci right 4.036550e-04	k: 1871	n:4850000
KS ci ratio: 1.959999e+00	ci left: 1.275613e-07	ci right 1.807684e-06	k: 3	n:4850000
ASTN2   4850000 perm   10393 sec   (467 perm/sec)   p_kst 6.185567e-07   p_cons 3.857732e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 9.051105e-02	ci left: 3.683375e-04	ci right 4.034557e-04	k: 1874	n:4860000
KS ci ratio: 1.959999e+00	ci left: 1.272988e-07	ci right 1.803965e-06	k: 3	n:4860000
ASTN2   4860000 perm   10433 sec   (466 perm/sec)   p_kst 6.172840e-07   p_cons 3.855967e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 9.043873e-02	ci left: 3.681832e-04	ci right 4.032572e-04	k: 1877	n:4870000
KS ci ratio: 1.959999e+00	ci left: 1.270374e-07	ci right 1.800260e-06	k: 3	n:4870000
ASTN2   4870000 perm   10473 sec   (465 perm/sec)   p_kst 6.160164e-07   p_cons 3.854209e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 9.036659e-02	ci left: 3.680296e-04	ci right 4.030595e-04	k: 1880	n:4880000
KS ci ratio: 1.959999e+00	ci left: 1.267771e-07	ci right 1.796571e-06	k: 3	n:4880000
ASTN2   4880000 perm   10513 sec   (464 perm/sec)   p_kst 6.147541e-07   p_cons 3.852459e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 9.019889e-02	ci left: 3.686761e-04	ci right 4.036990e-04	k: 1887	n:4890000
KS ci ratio: 1.959999e+00	ci left: 1.265178e-07	ci right 1.792897e-06	k: 3	n:4890000
ASTN2   4890000 perm   10553 sec   (463 perm/sec)   p_kst 6.134969e-07   p_cons 3.858896e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 9.007967e-02	ci left: 3.689212e-04	ci right 4.039185e-04	k: 1892	n:4900000
KS ci ratio: 1.959999e+00	ci left: 1.262596e-07	ci right 1.789238e-06	k: 3	n:4900000
ASTN2   4900000 perm   10593 sec   (463 perm/sec)   p_kst 6.122449e-07   p_cons 3.861224e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 8.996094e-02	ci left: 3.691652e-04	ci right 4.041371e-04	k: 1897	n:4910000
KS ci ratio: 1.959999e+00	ci left: 1.260025e-07	ci right 1.785594e-06	k: 3	n:4910000
ASTN2   4910000 perm   10634 sec   (462 perm/sec)   p_kst 6.109980e-07   p_cons 3.863544e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 8.984266e-02	ci left: 3.694083e-04	ci right 4.043548e-04	k: 1902	n:4920000
KS ci ratio: 1.959999e+00	ci left: 1.257464e-07	ci right 1.781965e-06	k: 3	n:4920000
ASTN2   4920000 perm   10674 sec   (461 perm/sec)   p_kst 6.097561e-07   p_cons 3.865854e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 8.972486e-02	ci left: 3.696504e-04	ci right 4.045716e-04	k: 1907	n:4930000
KS ci ratio: 1.959999e+00	ci left: 1.254913e-07	ci right 1.778350e-06	k: 3	n:4930000
ASTN2   4930000 perm   10714 sec   (460 perm/sec)   p_kst 6.085193e-07   p_cons 3.868154e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 8.965441e-02	ci left: 3.694958e-04	ci right 4.043735e-04	k: 1910	n:4940000
KS ci ratio: 1.959999e+00	ci left: 1.252373e-07	ci right 1.774751e-06	k: 3	n:4940000
ASTN2   4940000 perm   10756 sec   (459 perm/sec)   p_kst 6.072874e-07   p_cons 3.866397e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 8.953734e-02	ci left: 3.697368e-04	ci right 4.045893e-04	k: 1915	n:4950000
KS ci ratio: 1.959999e+00	ci left: 1.249843e-07	ci right 1.771165e-06	k: 3	n:4950000
ASTN2   4950000 perm   10797 sec   (458 perm/sec)   p_kst 6.060606e-07   p_cons 3.868687e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 8.946734e-02	ci left: 3.695827e-04	ci right 4.043920e-04	k: 1918	n:4960000
KS ci ratio: 1.959999e+00	ci left: 1.247323e-07	ci right 1.767594e-06	k: 3	n:4960000
ASTN2   4960000 perm   10838 sec   (458 perm/sec)   p_kst 6.048387e-07   p_cons 3.866935e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 8.937424e-02	ci left: 3.696259e-04	ci right 4.044012e-04	k: 1922	n:4970000
KS ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
ASTN2   4970000 perm   10879 sec   (457 perm/sec)   p_kst 6.036217e-07   p_cons 3.867203e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 8.930461e-02	ci left: 3.694726e-04	ci right 4.042050e-04	k: 1925	n:4980000
KS ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
ASTN2   4980000 perm   10921 sec   (456 perm/sec)   p_kst 6.024096e-07   p_cons 3.865462e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 8.921202e-02	ci left: 3.695159e-04	ci right 4.042144e-04	k: 1929	n:4990000
KS ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
ASTN2   4990000 perm   10962 sec   (455 perm/sec)   p_kst 6.012024e-07   p_cons 3.865731e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 9.321120e-02	ci left: 3.371153e-04	ci right 3.702678e-04	k: 1767	n:5000000
KS ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
ASTN2   5000000 perm   11003 sec   (454 perm/sec)   p_kst 6.000000e-07   p_cons 3.534000e-04   p_joint 0

Outputting figure to mutsig2_images.part000000000012/ASTN2.29_4187_5000000_6e-07_0.0003534_0.png
                gene_name: ASTN2
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 6.00e-07 
        ci_ks_bounds_left: 1.24e-07 
       ci_ks_bounds_right: 1.75e-06 
                   p_cons: 0.00035 
      ci_cons_bounds_left: 0.00034 
     ci_cons_bounds_right: 0.00037 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 6 percent done.
ASXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
ASXL3   10000 perm   3 sec   (3380 perm/sec)   p_kst 1.480000e-02   p_cons 9.760000e-02   p_joint 1.100000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
KS ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
ASXL3   20000 perm   6 sec   (3137 perm/sec)   p_kst 1.530000e-02   p_cons 1.044500e-01   p_joint 1.590000e-02

Joint ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
Cons ci ratio: 6.657190e-02	ci left: 1.001406e-01	ci right 1.070697e-01	k: 3107	n:30000
KS ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
ASXL3   30000 perm   10 sec   (3013 perm/sec)   p_kst 1.553333e-02   p_cons 1.035667e-01   p_joint 1.120000e-02

Joint ci ratio: 2.235984e-01	ci left: 6.772323e-03	ci right 8.500309e-03	k: 304	n:40000
Cons ci ratio: 5.741386e-02	ci left: 1.013704e-01	ci right 1.073872e-01	k: 4174	n:40000
KS ci ratio: 1.479373e-01	ci left: 1.597260e-02	ci right 1.854817e-02	k: 689	n:40000
ASXL3   40000 perm   14 sec   (2948 perm/sec)   p_kst 1.722500e-02   p_cons 1.043500e-01   p_joint 7.600000e-03

Joint ci ratio: 1.687251e-01	ci left: 9.778348e-03	ci right 1.159913e-02	k: 533	n:50000
Cons ci ratio: 5.198182e-02	ci left: 9.945922e-02	ci right 1.047871e-01	k: 5105	n:50000
KS ci ratio: 1.326721e-01	ci left: 1.602043e-02	ci right 1.831612e-02	k: 857	n:50000
ASXL3   50000 perm   17 sec   (2903 perm/sec)   p_kst 1.714000e-02   p_cons 1.021000e-01   p_joint 1.066000e-02

Joint ci ratio: 1.711554e-01	ci left: 7.924551e-03	ci right 9.423555e-03	k: 519	n:60000
Cons ci ratio: 4.722219e-02	ci left: 1.005788e-01	ci right 1.054597e-01	k: 6180	n:60000
KS ci ratio: 1.218128e-01	ci left: 1.593221e-02	ci right 1.801489e-02	k: 1017	n:60000
ASXL3   60000 perm   21 sec   (2865 perm/sec)   p_kst 1.695000e-02   p_cons 1.030000e-01   p_joint 8.650000e-03

Joint ci ratio: 1.636645e-01	ci left: 7.463004e-03	ci right 8.806820e-03	k: 568	n:70000
Cons ci ratio: 4.405434e-02	ci left: 9.937130e-02	ci right 1.038618e-01	k: 7112	n:70000
KS ci ratio: 1.132466e-01	ci left: 1.587473e-02	ci right 1.779419e-02	k: 1177	n:70000
ASXL3   70000 perm   25 sec   (2811 perm/sec)   p_kst 1.681429e-02   p_cons 1.016000e-01   p_joint 8.114286e-03

Joint ci ratio: 1.633154e-01	ci left: 6.565841e-03	ci right 7.745325e-03	k: 571	n:80000
Cons ci ratio: 4.127735e-02	ci left: 9.921742e-02	ci right 1.034115e-01	k: 8104	n:80000
KS ci ratio: 1.060241e-01	ci left: 1.590854e-02	ci right 1.770175e-02	k: 1343	n:80000
ASXL3   80000 perm   29 sec   (2778 perm/sec)   p_kst 1.678750e-02   p_cons 1.013000e-01   p_joint 7.137500e-03

Joint ci ratio: 1.422531e-01	ci left: 7.771196e-03	ci right 8.971926e-03	k: 752	n:90000
Cons ci ratio: 3.883882e-02	ci left: 9.969957e-02	ci right 1.036595e-01	k: 9150	n:90000
KS ci ratio: 1.003324e-01	ci left: 1.584034e-02	ci right 1.752435e-02	k: 1500	n:90000
ASXL3   90000 perm   33 sec   (2741 perm/sec)   p_kst 1.666667e-02   p_cons 1.016667e-01   p_joint 8.355556e-03

Joint ci ratio: 1.358291e-01	ci left: 7.698670e-03	ci right 8.830131e-03	k: 825	n:100000
Cons ci ratio: 3.688368e-02	ci left: 9.961502e-02	ci right 1.033681e-01	k: 10148	n:100000
KS ci ratio: 9.491722e-02	ci left: 1.597340e-02	ci right 1.757480e-02	k: 1676	n:100000
ASXL3   100000 perm   37 sec   (2711 perm/sec)   p_kst 1.676000e-02   p_cons 1.014800e-01   p_joint 8.250000e-03

Joint ci ratio: 1.361299e-01	ci left: 6.972266e-03	ci right 7.999412e-03	k: 822	n:110000
Cons ci ratio: 3.514953e-02	ci left: 9.979352e-02	ci right 1.033730e-01	k: 11173	n:110000
KS ci ratio: 8.985081e-02	ci left: 1.624428e-02	ci right 1.778134e-02	k: 1870	n:110000
ASXL3   110000 perm   41 sec   (2680 perm/sec)   p_kst 1.700000e-02   p_cons 1.015727e-01   p_joint 7.472727e-03

Joint ci ratio: 1.310584e-01	ci left: 6.914796e-03	ci right 7.892569e-03	k: 887	n:120000
Cons ci ratio: 3.360224e-02	ci left: 1.001442e-01	ci right 1.035750e-01	k: 12222	n:120000
KS ci ratio: 8.609197e-02	ci left: 1.625165e-02	ci right 1.772183e-02	k: 2037	n:120000
ASXL3   120000 perm   45 sec   (2653 perm/sec)   p_kst 1.697500e-02   p_cons 1.018500e-01   p_joint 7.391667e-03

Joint ci ratio: 1.136447e-01	ci left: 8.553555e-03	ci right 9.591598e-03	k: 1178	n:130000
Cons ci ratio: 3.226309e-02	ci left: 1.003293e-01	ci right 1.036269e-01	k: 13256	n:130000
KS ci ratio: 8.294092e-02	ci left: 1.619120e-02	ci right 1.759970e-02	k: 2195	n:130000
ASXL3   130000 perm   49 sec   (2626 perm/sec)   p_kst 1.688462e-02   p_cons 1.019692e-01   p_joint 9.061538e-03

Joint ci ratio: 1.176191e-01	ci left: 7.408230e-03	ci right 8.340897e-03	k: 1101	n:140000
Cons ci ratio: 3.111227e-02	ci left: 1.002562e-01	ci right 1.034317e-01	k: 14257	n:140000
KS ci ratio: 7.992257e-02	ci left: 1.621725e-02	ci right 1.757429e-02	k: 2364	n:140000
ASXL3   140000 perm   54 sec   (2597 perm/sec)   p_kst 1.688571e-02   p_cons 1.018357e-01   p_joint 7.864286e-03

Joint ci ratio: 1.207812e-01	ci left: 6.551968e-03	ci right 7.400591e-03	k: 1045	n:150000
Cons ci ratio: 3.007642e-02	ci left: 1.001947e-01	ci right 1.032608e-01	k: 15258	n:150000
KS ci ratio: 7.910614e-02	ci left: 1.546910e-02	ci right 1.674970e-02	k: 2415	n:150000
ASXL3   150000 perm   58 sec   (2571 perm/sec)   p_kst 1.610000e-02   p_cons 1.017200e-01   p_joint 6.966667e-03

Joint ci ratio: 1.174630e-01	ci left: 6.506287e-03	ci right 7.324234e-03	k: 1105	n:160000
Cons ci ratio: 2.909379e-02	ci left: 1.004156e-01	ci right 1.033864e-01	k: 16303	n:160000
KS ci ratio: 7.653487e-02	ci left: 1.551348e-02	ci right 1.675414e-02	k: 2580	n:160000
ASXL3   160000 perm   63 sec   (2544 perm/sec)   p_kst 1.612500e-02   p_cons 1.018938e-01   p_joint 6.906250e-03

Joint ci ratio: 1.161210e-01	ci left: 6.271993e-03	ci right 7.050857e-03	k: 1131	n:170000
Cons ci ratio: 2.817896e-02	ci left: 1.007581e-01	ci right 1.036437e-01	k: 17373	n:170000
KS ci ratio: 7.436438e-02	ci left: 1.548393e-02	ci right 1.668559e-02	k: 2733	n:170000
ASXL3   170000 perm   67 sec   (2520 perm/sec)   p_kst 1.607647e-02   p_cons 1.021941e-01   p_joint 6.652941e-03

Joint ci ratio: 1.197627e-01	ci left: 5.562183e-03	ci right 6.276093e-03	k: 1064	n:180000
Cons ci ratio: 2.736267e-02	ci left: 1.009479e-01	ci right 1.037539e-01	k: 18422	n:180000
KS ci ratio: 7.214043e-02	ci left: 1.555633e-02	ci right 1.672599e-02	k: 2904	n:180000
ASXL3   180000 perm   72 sec   (2495 perm/sec)   p_kst 1.613333e-02   p_cons 1.023444e-01   p_joint 5.911111e-03

Joint ci ratio: 1.193875e-01	ci left: 5.305134e-03	ci right 5.983767e-03	k: 1071	n:190000
Cons ci ratio: 2.666228e-02	ci left: 1.007839e-01	ci right 1.035125e-01	k: 19407	n:190000
KS ci ratio: 7.044305e-02	ci left: 1.547160e-02	ci right 1.660640e-02	k: 3046	n:190000
ASXL3   190000 perm   77 sec   (2472 perm/sec)   p_kst 1.603158e-02   p_cons 1.021421e-01   p_joint 5.636842e-03

Joint ci ratio: 1.095610e-01	ci left: 6.011408e-03	ci right 6.713015e-03	k: 1271	n:200000
Cons ci ratio: 2.598822e-02	ci left: 1.008111e-01	ci right 1.034704e-01	k: 20427	n:200000
KS ci ratio: 6.876153e-02	ci left: 1.543987e-02	ci right 1.654422e-02	k: 3197	n:200000
ASXL3   200000 perm   82 sec   (2449 perm/sec)   p_kst 1.598500e-02   p_cons 1.021350e-01   p_joint 6.355000e-03

Joint ci ratio: 1.070659e-01	ci left: 6.003123e-03	ci right 6.686801e-03	k: 1331	n:210000
Cons ci ratio: 2.537799e-02	ci left: 1.007276e-01	ci right 1.033215e-01	k: 21424	n:210000
KS ci ratio: 6.705266e-02	ci left: 1.547702e-02	ci right 1.655545e-02	k: 3362	n:210000
ASXL3   210000 perm   87 sec   (2426 perm/sec)   p_kst 1.600952e-02   p_cons 1.020190e-01   p_joint 6.338095e-03

Joint ci ratio: 1.067594e-01	ci left: 5.765607e-03	ci right 6.420236e-03	k: 1339	n:220000
Cons ci ratio: 2.477193e-02	ci left: 1.009237e-01	ci right 1.034596e-01	k: 22481	n:220000
KS ci ratio: 6.537108e-02	ci left: 1.555582e-02	ci right 1.661153e-02	k: 3537	n:220000
ASXL3   220000 perm   92 sec   (2399 perm/sec)   p_kst 1.607727e-02   p_cons 1.021864e-01   p_joint 6.086364e-03

Joint ci ratio: 1.057076e-01	ci left: 5.629179e-03	ci right 6.261630e-03	k: 1366	n:230000
Cons ci ratio: 2.420673e-02	ci left: 1.011076e-01	ci right 1.035894e-01	k: 23539	n:230000
KS ci ratio: 6.383619e-02	ci left: 1.561524e-02	ci right 1.664918e-02	k: 3709	n:230000
ASXL3   230000 perm   97 sec   (2374 perm/sec)   p_kst 1.612609e-02   p_cons 1.023435e-01   p_joint 5.939130e-03

Joint ci ratio: 1.061906e-01	ci left: 5.345914e-03	ci right 5.949453e-03	k: 1354	n:240000
Cons ci ratio: 2.370861e-02	ci left: 1.010447e-01	ci right 1.034732e-01	k: 24541	n:240000
KS ci ratio: 6.250283e-02	ci left: 1.562074e-02	ci right 1.663266e-02	k: 3869	n:240000
ASXL3   240000 perm   102 sec   (2350 perm/sec)   p_kst 1.612083e-02   p_cons 1.022542e-01   p_joint 5.641667e-03

Joint ci ratio: 9.514523e-02	ci left: 6.422999e-03	ci right 7.068516e-03	k: 1685	n:250000
Cons ci ratio: 2.325067e-02	ci left: 1.009038e-01	ci right 1.032814e-01	k: 25522	n:250000
KS ci ratio: 6.109577e-02	ci left: 1.570481e-02	ci right 1.669845e-02	k: 4049	n:250000
ASXL3   250000 perm   107 sec   (2328 perm/sec)   p_kst 1.619600e-02   p_cons 1.020880e-01   p_joint 6.740000e-03

Outputting figure to mutsig2_images.part000000000012/ASXL3.27_6795_250000_0.016196_0.10209_0.00674.png
                gene_name: ASXL3
               theta_stop: 0.095 
                    nperm: 250000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0071 

Current progress: 8 percent done.
ASH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
ASH1L   10000 perm   3 sec   (3074 perm/sec)   p_kst 4.731000e-01   p_cons 5.800000e-02   p_joint 1.583000e-01

Joint ci ratio: 6.119201e-02	ci left: 1.650149e-01	ci right 1.754812e-01	k: 3404	n:20000
Cons ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
KS ci ratio: 2.911819e-02	ci left: 4.684079e-01	ci right 4.822993e-01	k: 9507	n:20000
ASH1L   20000 perm   7 sec   (2886 perm/sec)   p_kst 4.753500e-01   p_cons 5.775000e-02   p_joint 1.702000e-01

Joint ci ratio: 5.775850e-02	ci left: 1.292423e-01	ci right 1.369623e-01	k: 3992	n:30000
Cons ci ratio: 9.065570e-02	ci left: 5.600099e-02	ci right 6.135154e-02	k: 1759	n:30000
KS ci ratio: 2.383520e-02	ci left: 4.684357e-01	ci right 4.797693e-01	k: 14223	n:30000
ASH1L   30000 perm   11 sec   (2794 perm/sec)   p_kst 4.741000e-01   p_cons 5.863333e-02   p_joint 1.330667e-01

Outputting figure to mutsig2_images.part000000000012/ASH1L.22_9003_30000_0.4741_0.058633_0.13307.png
                gene_name: ASH1L
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 10 percent done.
ASAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.043147e-02	ci left: 2.281004e-01	ci right 2.448534e-01	k: 2364	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
ASAP1   10000 perm   2 sec   (4379 perm/sec)   p_kst 3.576000e-01   p_cons 2.106000e-01   p_joint 2.364000e-01

Outputting figure to mutsig2_images.part000000000012/ASAP1.13_3506_10000_0.3576_0.2106_0.2364.png
                gene_name: ASAP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 12 percent done.
ATAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
Cons ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
KS ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
ATAD2   10000 perm   2 sec   (4237 perm/sec)   p_kst 1.286000e-01   p_cons 6.477000e-01   p_joint 2.252000e-01

Joint ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
Cons ci ratio: 2.096653e-02	ci left: 6.293375e-01	ci right 6.427229e-01	k: 12721	n:20000
KS ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
ATAD2   20000 perm   5 sec   (3875 perm/sec)   p_kst 1.238000e-01   p_cons 6.360500e-01   p_joint 2.184500e-01

Outputting figure to mutsig2_images.part000000000012/ATAD2.11_4285_20000_0.1238_0.63605_0.21845.png
                gene_name: ATAD2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 13 percent done.
ASCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
Cons ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
KS ci ratio: 4.929473e-02	ci left: 3.777363e-01	ci right 3.969293e-01	k: 3873	n:10000
ASCC3   10000 perm   3 sec   (3710 perm/sec)   p_kst 3.873000e-01   p_cons 7.172000e-01   p_joint 6.076000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC3.10_6872_10000_0.3873_0.7172_0.6076.png
                gene_name: ASCC3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 15 percent done.
ASXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
ASXL2   10000 perm   2 sec   (4565 perm/sec)   p_kst 3.920000e-02   p_cons 9.213000e-01   p_joint 1.175000e-01

Joint ci ratio: 8.283239e-02	ci left: 9.651357e-02	ci right 1.049029e-01	k: 2013	n:20000
Cons ci ratio: 8.425477e-03	ci left: 9.115086e-01	ci right 9.192701e-01	k: 18309	n:20000
KS ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
ASXL2   20000 perm   5 sec   (4023 perm/sec)   p_kst 3.865000e-02   p_cons 9.154500e-01   p_joint 1.006500e-01

Joint ci ratio: 7.863341e-02	ci left: 7.348400e-02	ci right 7.953165e-02	k: 2294	n:30000
Cons ci ratio: 6.848532e-03	ci left: 9.129396e-01	ci right 9.192462e-01	k: 27484	n:30000
KS ci ratio: 1.117978e-01	ci left: 3.716172e-02	ci right 4.159472e-02	k: 1180	n:30000
ASXL2   30000 perm   8 sec   (3897 perm/sec)   p_kst 3.933333e-02   p_cons 9.161333e-01   p_joint 7.646667e-02

Joint ci ratio: 6.854855e-02	ci left: 7.297851e-02	ci right 7.818330e-02	k: 3022	n:40000
Cons ci ratio: 5.926306e-03	ci left: 9.134925e-01	ci right 9.189469e-01	k: 36650	n:40000
KS ci ratio: 9.700195e-02	ci left: 3.731916e-02	ci right 4.114810e-02	k: 1568	n:40000
ASXL2   40000 perm   10 sec   (3813 perm/sec)   p_kst 3.920000e-02   p_cons 9.162500e-01   p_joint 7.555000e-02

Outputting figure to mutsig2_images.part000000000012/ASXL2.9_4356_40000_0.0392_0.91625_0.07555.png
                gene_name: ASXL2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 17 percent done.
ATF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.374355e-02	ci left: 4.355261e-01	ci right 4.551058e-01	k: 4453	n:10000
KS ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
ATF6   10000 perm   2 sec   (4879 perm/sec)   p_kst 9.080000e-01   p_cons 4.453000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATF6.8_2077_10000_0.908_0.4453_1.png
                gene_name: ATF6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
ASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
Cons ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
KS ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
ASTL   10000 perm   2 sec   (5304 perm/sec)   p_kst 5.180000e-01   p_cons 7.631000e-01   p_joint 7.390000e-01

Outputting figure to mutsig2_images.part000000000012/ASTL.7_1331_10000_0.518_0.7631_0.739.png
                gene_name: ASTL
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 21 percent done.
ATG2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.675415e-02	ci left: 5.222622e-01	ci right 5.419191e-01	k: 5321	n:10000
KS ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
ATG2B   10000 perm   2 sec   (4308 perm/sec)   p_kst 7.648000e-01   p_cons 5.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATG2B.7_6405_10000_0.7648_0.5321_1.png
                gene_name: ATG2B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
ASAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
Cons ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
KS ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
ASAP2   10000 perm   2 sec   (4930 perm/sec)   p_kst 2.211000e-01   p_cons 1.268000e-01   p_joint 1.038000e-01

Joint ci ratio: 6.275318e-02	ci left: 1.581026e-01	ci right 1.683955e-01	k: 3264	n:20000
Cons ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
KS ci ratio: 5.212347e-02	ci left: 2.146712e-01	ci right 2.262102e-01	k: 4408	n:20000
ASAP2   20000 perm   4 sec   (4453 perm/sec)   p_kst 2.204000e-01   p_cons 1.267500e-01   p_joint 1.632000e-01

Outputting figure to mutsig2_images.part000000000012/ASAP2.6_3133_20000_0.2204_0.12675_0.1632.png
                gene_name: ASAP2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 25 percent done.
ASMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KS ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
ASMT   10000 perm   2 sec   (5925 perm/sec)   p_kst 1.718000e-01   p_cons 5.300000e-03   p_joint 3.560000e-02

Joint ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
Cons ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
KS ci ratio: 6.057130e-02	ci left: 1.678795e-01	ci right 1.784157e-01	k: 3462	n:20000
ASMT   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.731000e-01   p_cons 5.100000e-03   p_joint 1.660000e-02

Joint ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
Cons ci ratio: 3.052577e-01	ci left: 4.633018e-03	ci right 6.331580e-03	k: 163	n:30000
KS ci ratio: 4.977259e-02	ci left: 1.670518e-01	ci right 1.756119e-01	k: 5139	n:30000
ASMT   30000 perm   6 sec   (4999 perm/sec)   p_kst 1.713000e-01   p_cons 5.433333e-03   p_joint 1.106667e-02

Joint ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
Cons ci ratio: 2.446932e-01	ci left: 5.595075e-03	ci right 7.177869e-03	k: 254	n:40000
KS ci ratio: 4.341181e-02	ci left: 1.656365e-01	ci right 1.730116e-01	k: 6772	n:40000
ASMT   40000 perm   8 sec   (4841 perm/sec)   p_kst 1.693000e-01   p_cons 6.350000e-03   p_joint 1.645000e-02

Joint ci ratio: 1.465898e-01	ci left: 1.306556e-02	ci right 1.515142e-02	k: 704	n:50000
Cons ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
KS ci ratio: 3.878258e-02	ci left: 1.663595e-01	ci right 1.729589e-01	k: 8482	n:50000
ASMT   50000 perm   11 sec   (4694 perm/sec)   p_kst 1.696400e-01   p_cons 6.400000e-03   p_joint 1.408000e-02

Joint ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
Cons ci ratio: 2.004523e-01	ci left: 5.698378e-03	ci right 6.983408e-03	k: 379	n:60000
KS ci ratio: 3.531707e-02	ci left: 1.673330e-01	ci right 1.733656e-01	k: 10220	n:60000
ASMT   60000 perm   13 sec   (4582 perm/sec)   p_kst 1.703333e-01   p_cons 6.316667e-03   p_joint 1.045000e-02

Joint ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
Cons ci ratio: 1.860764e-01	ci left: 5.713638e-03	ci right 6.899273e-03	k: 440	n:70000
KS ci ratio: 3.270472e-02	ci left: 1.674936e-01	ci right 1.730767e-01	k: 11919	n:70000
ASMT   70000 perm   16 sec   (4488 perm/sec)   p_kst 1.702714e-01   p_cons 6.285714e-03   p_joint 1.458571e-02

Joint ci ratio: 1.024027e-01	ci left: 1.706560e-02	ci right 1.891959e-02	k: 1438	n:80000
Cons ci ratio: 1.728548e-01	ci left: 5.835200e-03	ci right 6.951050e-03	k: 510	n:80000
KS ci ratio: 3.069417e-02	ci left: 1.667444e-01	ci right 1.719546e-01	k: 13547	n:80000
ASMT   80000 perm   18 sec   (4395 perm/sec)   p_kst 1.693375e-01   p_cons 6.375000e-03   p_joint 1.797500e-02

Joint ci ratio: 1.037973e-01	ci left: 1.478965e-02	ci right 1.641957e-02	k: 1403	n:90000
Cons ci ratio: 1.642501e-01	ci left: 5.772172e-03	ci right 6.815589e-03	k: 565	n:90000
KS ci ratio: 2.892904e-02	ci left: 1.669876e-01	ci right 1.719004e-01	k: 15249	n:90000
ASMT   90000 perm   21 sec   (4311 perm/sec)   p_kst 1.694333e-01   p_cons 6.277778e-03   p_joint 1.558889e-02

Joint ci ratio: 9.811997e-02	ci left: 1.493859e-02	ci right 1.648968e-02	k: 1570	n:100000
Cons ci ratio: 1.577111e-01	ci left: 5.655594e-03	ci right 6.633383e-03	k: 613	n:100000
KS ci ratio: 2.741184e-02	ci left: 1.674477e-01	ci right 1.721115e-01	k: 16977	n:100000
ASMT   100000 perm   24 sec   (4233 perm/sec)   p_kst 1.697700e-01   p_cons 6.130000e-03   p_joint 1.570000e-02

Joint ci ratio: 9.778155e-02	ci left: 1.369539e-02	ci right 1.511220e-02	k: 1583	n:110000
Cons ci ratio: 1.510937e-01	ci left: 5.622129e-03	ci right 6.549657e-03	k: 668	n:110000
KS ci ratio: 2.616469e-02	ci left: 1.672508e-01	ci right 1.716939e-01	k: 18641	n:110000
ASMT   110000 perm   26 sec   (4158 perm/sec)   p_kst 1.694636e-01   p_cons 6.072727e-03   p_joint 1.439091e-02

Joint ci ratio: 9.519613e-02	ci left: 1.326960e-02	ci right 1.460404e-02	k: 1671	n:120000
Cons ci ratio: 1.446431e-01	ci left: 5.643153e-03	ci right 6.530971e-03	k: 729	n:120000
KS ci ratio: 2.508550e-02	ci left: 1.669582e-01	ci right 1.712079e-01	k: 20289	n:120000
ASMT   120000 perm   29 sec   (4083 perm/sec)   p_kst 1.690750e-01   p_cons 6.075000e-03   p_joint 1.392500e-02

Joint ci ratio: 8.511555e-02	ci left: 1.537007e-02	ci right 1.674394e-02	k: 2086	n:130000
Cons ci ratio: 1.389539e-01	ci left: 5.661656e-03	ci right 6.514448e-03	k: 790	n:130000
KS ci ratio: 2.416878e-02	ci left: 1.662621e-01	ci right 1.703373e-01	k: 21878	n:130000
ASMT   130000 perm   32 sec   (4013 perm/sec)   p_kst 1.682923e-01   p_cons 6.076923e-03   p_joint 1.604615e-02

Joint ci ratio: 8.450984e-02	ci left: 1.449566e-02	ci right 1.578168e-02	k: 2118	n:140000
Cons ci ratio: 1.335721e-01	ci left: 5.705722e-03	ci right 6.529221e-03	k: 855	n:140000
KS ci ratio: 2.326114e-02	ci left: 1.666777e-01	ci right 1.706075e-01	k: 23609	n:140000
ASMT   140000 perm   36 sec   (3943 perm/sec)   p_kst 1.686357e-01   p_cons 6.107143e-03   p_joint 1.512857e-02

Joint ci ratio: 9.453337e-02	ci left: 1.079727e-02	ci right 1.187508e-02	k: 1699	n:150000
Cons ci ratio: 1.338356e-01	ci left: 5.305935e-03	ci right 6.073362e-03	k: 852	n:150000
KS ci ratio: 2.245554e-02	ci left: 1.669540e-01	ci right 1.707522e-01	k: 25327	n:150000
ASMT   150000 perm   39 sec   (3876 perm/sec)   p_kst 1.688467e-01   p_cons 5.680000e-03   p_joint 1.132667e-02

Joint ci ratio: 8.156254e-02	ci left: 1.365046e-02	ci right 1.481724e-02	k: 2276	n:160000
Cons ci ratio: 1.306638e-01	ci left: 5.228116e-03	ci right 5.964974e-03	k: 894	n:160000
KS ci ratio: 2.174711e-02	ci left: 1.669551e-01	ci right 1.706320e-01	k: 27006	n:160000
ASMT   160000 perm   42 sec   (3816 perm/sec)   p_kst 1.687875e-01   p_cons 5.587500e-03   p_joint 1.422500e-02

Joint ci ratio: 7.903312e-02	ci left: 1.370061e-02	ci right 1.483369e-02	k: 2424	n:170000
Cons ci ratio: 1.259616e-01	ci left: 5.307756e-03	ci right 6.026907e-03	k: 962	n:170000
KS ci ratio: 2.110617e-02	ci left: 1.668991e-01	ci right 1.704651e-01	k: 28675	n:170000
ASMT   170000 perm   45 sec   (3758 perm/sec)   p_kst 1.686765e-01   p_cons 5.658824e-03   p_joint 1.425882e-02

Joint ci ratio: 7.721387e-02	ci left: 1.357128e-02	ci right 1.466667e-02	k: 2540	n:180000
Cons ci ratio: 1.225728e-01	ci left: 5.303555e-03	ci right 6.001401e-03	k: 1016	n:180000
KS ci ratio: 2.050373e-02	ci left: 1.670556e-01	ci right 1.705218e-01	k: 30381	n:180000
ASMT   180000 perm   49 sec   (3703 perm/sec)   p_kst 1.687833e-01   p_cons 5.644444e-03   p_joint 1.411111e-02

Joint ci ratio: 6.814922e-02	ci left: 1.653215e-02	ci right 1.770370e-02	k: 3251	n:190000
Cons ci ratio: 1.140525e-01	ci left: 5.826396e-03	ci right 6.536166e-03	k: 1173	n:190000
KS ci ratio: 1.995757e-02	ci left: 1.670920e-01	ci right 1.704655e-01	k: 32067	n:190000
ASMT   190000 perm   52 sec   (3650 perm/sec)   p_kst 1.687737e-01   p_cons 6.173684e-03   p_joint 1.711053e-02

Joint ci ratio: 7.827370e-02	ci left: 1.189997e-02	ci right 1.287424e-02	k: 2476	n:200000
Cons ci ratio: 1.107502e-01	ci left: 5.880105e-03	ci right 6.574323e-03	k: 1244	n:200000
KS ci ratio: 2.007093e-02	ci left: 1.585651e-01	ci right 1.617848e-01	k: 32034	n:200000
ASMT   200000 perm   56 sec   (3598 perm/sec)   p_kst 1.601700e-01   p_cons 6.220000e-03   p_joint 1.238000e-02

Joint ci ratio: 7.665410e-02	ci left: 1.182827e-02	ci right 1.277574e-02	k: 2582	n:210000
Cons ci ratio: 1.078014e-01	ci left: 5.919698e-03	ci right 6.598801e-03	k: 1313	n:210000
KS ci ratio: 1.958124e-02	ci left: 1.586857e-01	ci right 1.618284e-01	k: 33653	n:210000
ASMT   210000 perm   59 sec   (3547 perm/sec)   p_kst 1.602524e-01   p_cons 6.252381e-03   p_joint 1.229524e-02

Joint ci ratio: 7.709976e-02	ci left: 1.116565e-02	ci right 1.206547e-02	k: 2554	n:220000
Cons ci ratio: 1.058883e-01	ci left: 5.862963e-03	ci right 6.522877e-03	k: 1361	n:220000
KS ci ratio: 1.913737e-02	ci left: 1.586333e-01	ci right 1.617029e-01	k: 35236	n:220000
ASMT   220000 perm   63 sec   (3501 perm/sec)   p_kst 1.601636e-01   p_cons 6.186364e-03   p_joint 1.160909e-02

Joint ci ratio: 7.724184e-02	ci left: 1.064597e-02	ci right 1.150555e-02	k: 2546	n:230000
Cons ci ratio: 1.034844e-01	ci left: 5.879029e-03	ci right 6.524814e-03	k: 1425	n:230000
KS ci ratio: 1.870694e-02	ci left: 1.588071e-01	ci right 1.618102e-01	k: 36870	n:230000
ASMT   230000 perm   67 sec   (3454 perm/sec)   p_kst 1.603043e-01   p_cons 6.195652e-03   p_joint 1.106957e-02

Joint ci ratio: 8.012278e-02	ci left: 9.479161e-03	ci right 1.027441e-02	k: 2369	n:240000
Cons ci ratio: 1.009987e-01	ci left: 5.922345e-03	ci right 6.556335e-03	k: 1496	n:240000
KS ci ratio: 1.812217e-02	ci left: 1.616695e-01	ci right 1.646303e-01	k: 39155	n:240000
ASMT   240000 perm   70 sec   (3408 perm/sec)   p_kst 1.631458e-01   p_cons 6.233333e-03   p_joint 9.870833e-03

Joint ci ratio: 8.019002e-02	ci left: 9.088161e-03	ci right 9.851276e-03	k: 2366	n:250000
Cons ci ratio: 9.909806e-02	ci left: 5.911644e-03	ci right 6.531887e-03	k: 1554	n:250000
KS ci ratio: 1.776370e-02	ci left: 1.615819e-01	ci right 1.644819e-01	k: 40757	n:250000
ASMT   250000 perm   74 sec   (3364 perm/sec)   p_kst 1.630280e-01   p_cons 6.216000e-03   p_joint 9.464000e-03

Outputting figure to mutsig2_images.part000000000012/ASMT.6_1158_250000_0.16303_0.006216_0.009464.png
                gene_name: ASMT
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0059 
     ci_cons_bounds_right: 0.0065 
                  p_joint: 0.0095 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.0099 

Current progress: 27 percent done.
ASZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
ASZ1   10000 perm   2 sec   (5891 perm/sec)   p_kst 5.610000e-02   p_cons 3.713000e-01   p_joint 1.314000e-01

Joint ci ratio: 6.489173e-02	ci left: 1.492698e-01	ci right 1.593309e-01	k: 3085	n:20000
Cons ci ratio: 3.692617e-02	ci left: 3.536919e-01	ci right 3.670487e-01	k: 7207	n:20000
KS ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
ASZ1   20000 perm   4 sec   (5232 perm/sec)   p_kst 5.725000e-02   p_cons 3.603500e-01   p_joint 1.542500e-01

Joint ci ratio: 5.386059e-02	ci left: 1.460098e-01	ci right 1.541248e-01	k: 4501	n:30000
Cons ci ratio: 3.002837e-02	ci left: 3.567913e-01	ci right 3.677021e-01	k: 10867	n:30000
KS ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
ASZ1   30000 perm   6 sec   (4969 perm/sec)   p_kst 5.696667e-02   p_cons 3.622333e-01   p_joint 1.500333e-01

Outputting figure to mutsig2_images.part000000000012/ASZ1.6_1480_30000_0.056967_0.36223_0.15003.png
                gene_name: ASZ1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 29 percent done.
ATF6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
Cons ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KS ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
ATF6B   10000 perm   2 sec   (5548 perm/sec)   p_kst 4.762000e-01   p_cons 1.351000e-01   p_joint 3.575000e-01

Outputting figure to mutsig2_images.part000000000012/ATF6B.6_2184_10000_0.4762_0.1351_0.3575.png
                gene_name: ATF6B
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 31 percent done.
ASB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
ASB15   10000 perm   2 sec   (6005 perm/sec)   p_kst 3.803000e-01   p_cons 5.610000e-02   p_joint 1.169000e-01

Joint ci ratio: 6.961204e-02	ci left: 1.320656e-01	ci right 1.416403e-01	k: 2736	n:20000
Cons ci ratio: 1.143447e-01	ci left: 5.231807e-02	ci right 5.871192e-02	k: 1109	n:20000
KS ci ratio: 3.499264e-02	ci left: 3.787467e-01	ci right 3.922866e-01	k: 7710	n:20000
ASB15   20000 perm   4 sec   (5235 perm/sec)   p_kst 3.855000e-01   p_cons 5.545000e-02   p_joint 1.368000e-01

Joint ci ratio: 5.365741e-02	ci left: 1.469656e-01	ci right 1.551021e-01	k: 4530	n:30000
Cons ci ratio: 9.643665e-02	ci left: 4.967724e-02	ci right 5.474326e-02	k: 1565	n:30000
KS ci ratio: 2.856026e-02	ci left: 3.801865e-01	ci right 3.912356e-01	k: 11571	n:30000
ASB15   30000 perm   6 sec   (4957 perm/sec)   p_kst 3.857000e-01   p_cons 5.216667e-02   p_joint 1.510000e-01

Outputting figure to mutsig2_images.part000000000012/ASB15.5_1803_30000_0.3857_0.052167_0.151.png
                gene_name: ASB15
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 33 percent done.
ATF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
Cons ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
KS ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
ATF2   10000 perm   2 sec   (5489 perm/sec)   p_kst 1.761000e-01   p_cons 1.435000e-01   p_joint 1.497000e-01

Outputting figure to mutsig2_images.part000000000012/ATF2.5_1566_10000_0.1761_0.1435_0.1497.png
                gene_name: ATF2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
ATG2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
Cons ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
KS ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
ATG2A   10000 perm   2 sec   (4360 perm/sec)   p_kst 6.920000e-02   p_cons 4.250000e-01   p_joint 1.921000e-01

Joint ci ratio: 6.447230e-02	ci left: 1.509471e-01	ci right 1.610531e-01	k: 3119	n:20000
Cons ci ratio: 3.229436e-02	ci left: 4.172871e-01	ci right 4.310349e-01	k: 8483	n:20000
KS ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
ATG2A   20000 perm   5 sec   (3929 perm/sec)   p_kst 7.230000e-02   p_cons 4.241500e-01   p_joint 1.559500e-01

Outputting figure to mutsig2_images.part000000000012/ATG2A.5_5981_20000_0.0723_0.42415_0.15595.png
                gene_name: ATG2A
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
ASB17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
ASB17   10000 perm   1 sec   (7071 perm/sec)   p_kst 2.502000e-01   p_cons 9.280000e-01   p_joint 3.335000e-01

Outputting figure to mutsig2_images.part000000000012/ASB17.4_900_10000_0.2502_0.928_0.3335.png
                gene_name: ASB17
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 38 percent done.
ASB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
ASB2   10000 perm   2 sec   (6005 perm/sec)   p_kst 5.629000e-01   p_cons 7.087000e-01   p_joint 7.866000e-01

Outputting figure to mutsig2_images.part000000000012/ASB2.4_1796_10000_0.5629_0.7087_0.7866.png
                gene_name: ASB2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 40 percent done.
ASB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.914833e-03	ci left: 9.464818e-01	ci right 9.550532e-01	k: 9509	n:10000
KS ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
ASB5   10000 perm   2 sec   (6055 perm/sec)   p_kst 6.900000e-01   p_cons 9.509000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB5.4_1018_10000_0.69_0.9509_1.png
                gene_name: ASB5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ASCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.003833e-02	ci left: 6.204504e-01	ci right 6.394738e-01	k: 6300	n:10000
Cons ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
ASCC2   10000 perm   2 sec   (5795 perm/sec)   p_kst 5.223000e-01   p_cons 6.395000e-01   p_joint 6.300000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC2.4_2350_10000_0.5223_0.6395_0.63.png
                gene_name: ASCC2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 44 percent done.
ASCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
Cons ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
KS ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
ASCL3   10000 perm   2 sec   (6258 perm/sec)   p_kst 3.332000e-01   p_cons 9.900000e-03   p_joint 6.320000e-02

Joint ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
Cons ci ratio: 2.652715e-01	ci left: 9.367279e-03	ci right 1.227757e-02	k: 215	n:20000
KS ci ratio: 3.909294e-02	ci left: 3.279605e-01	ci right 3.410876e-01	k: 6690	n:20000
ASCL3   20000 perm   4 sec   (5459 perm/sec)   p_kst 3.345000e-01   p_cons 1.075000e-02   p_joint 6.095000e-02

Joint ci ratio: 9.245493e-02	ci left: 5.391372e-02	ci right 5.917257e-02	k: 1695	n:30000
Cons ci ratio: 2.193492e-01	ci left: 9.377501e-03	ci right 1.171874e-02	k: 315	n:30000
KS ci ratio: 3.184889e-02	ci left: 3.301565e-01	ci right 3.408754e-01	k: 10065	n:30000
ASCL3   30000 perm   6 sec   (5050 perm/sec)   p_kst 3.355000e-01   p_cons 1.050000e-02   p_joint 5.650000e-02

Joint ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
Cons ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
KS ci ratio: 2.761187e-02	ci left: 3.303991e-01	ci right 3.396749e-01	k: 13401	n:40000
ASCL3   40000 perm   8 sec   (4898 perm/sec)   p_kst 3.350250e-01   p_cons 9.975000e-03   p_joint 2.817500e-02

Joint ci ratio: 9.372861e-02	ci left: 3.221357e-02	ci right 3.540086e-02	k: 1689	n:50000
Cons ci ratio: 1.765803e-01	ci left: 8.897727e-03	ci right 1.063990e-02	k: 487	n:50000
KS ci ratio: 2.471289e-02	ci left: 3.306034e-01	ci right 3.388958e-01	k: 16737	n:50000
ASCL3   50000 perm   10 sec   (4787 perm/sec)   p_kst 3.347400e-01   p_cons 9.740000e-03   p_joint 3.378000e-02

Joint ci ratio: 9.360340e-02	ci left: 2.706907e-02	ci right 2.974347e-02	k: 1703	n:60000
Cons ci ratio: 1.636978e-01	ci left: 8.691314e-03	ci right 1.025668e-02	k: 567	n:60000
KS ci ratio: 2.249365e-02	ci left: 3.322701e-01	ci right 3.398458e-01	k: 20163	n:60000
ASCL3   60000 perm   13 sec   (4680 perm/sec)   p_kst 3.360500e-01   p_cons 9.450000e-03   p_joint 2.838333e-02

Joint ci ratio: 8.813098e-02	ci left: 2.627305e-02	ci right 2.870919e-02	k: 1923	n:70000
Cons ci ratio: 1.518637e-01	ci left: 8.712152e-03	ci right 1.015752e-02	k: 659	n:70000
KS ci ratio: 2.084687e-02	ci left: 3.320874e-01	ci right 3.390976e-01	k: 23491	n:70000
ASCL3   70000 perm   15 sec   (4586 perm/sec)   p_kst 3.355857e-01   p_cons 9.414286e-03   p_joint 2.747143e-02

Joint ci ratio: 8.396015e-02	ci left: 2.541019e-02	ci right 2.764932e-02	k: 2121	n:80000
Cons ci ratio: 1.426569e-01	ci left: 8.682620e-03	ci right 1.002832e-02	k: 747	n:80000
KS ci ratio: 1.950921e-02	ci left: 3.321157e-01	ci right 3.386713e-01	k: 26831	n:80000
ASCL3   80000 perm   18 sec   (4493 perm/sec)   p_kst 3.353875e-01   p_cons 9.337500e-03   p_joint 2.651250e-02

Joint ci ratio: 8.178748e-02	ci left: 2.386999e-02	ci right 2.591634e-02	k: 2239	n:90000
Cons ci ratio: 1.355180e-01	ci left: 8.586549e-03	ci right 9.845389e-03	k: 828	n:90000
KS ci ratio: 1.838980e-02	ci left: 3.323929e-01	ci right 3.385733e-01	k: 30193	n:90000
ASCL3   90000 perm   20 sec   (4405 perm/sec)   p_kst 3.354778e-01   p_cons 9.200000e-03   p_joint 2.487778e-02

Joint ci ratio: 8.429022e-02	ci left: 2.027691e-02	ci right 2.207101e-02	k: 2116	n:100000
Cons ci ratio: 1.279421e-01	ci left: 8.704661e-03	ci right 9.904060e-03	k: 929	n:100000
KS ci ratio: 1.743901e-02	ci left: 3.327330e-01	ci right 3.385965e-01	k: 33566	n:100000
ASCL3   100000 perm   23 sec   (4330 perm/sec)   p_kst 3.356600e-01   p_cons 9.290000e-03   p_joint 2.116000e-02

Joint ci ratio: 7.338769e-02	ci left: 2.435320e-02	ci right 2.621740e-02	k: 2780	n:110000
Cons ci ratio: 1.215094e-01	ci left: 8.802900e-03	ci right 9.950464e-03	k: 1030	n:110000
KS ci ratio: 1.662361e-02	ci left: 3.329726e-01	ci right 3.385633e-01	k: 36934	n:110000
ASCL3   110000 perm   26 sec   (4253 perm/sec)   p_kst 3.357636e-01   p_cons 9.363636e-03   p_joint 2.527273e-02

Joint ci ratio: 7.128012e-02	ci left: 2.370634e-02	ci right 2.546674e-02	k: 2949	n:120000
Cons ci ratio: 1.160103e-01	ci left: 8.877929e-03	ci right 9.979307e-03	k: 1130	n:120000
KS ci ratio: 1.592861e-02	ci left: 3.327369e-01	ci right 3.380877e-01	k: 40249	n:120000
ASCL3   120000 perm   29 sec   (4182 perm/sec)   p_kst 3.354083e-01   p_cons 9.416667e-03   p_joint 2.457500e-02

Joint ci ratio: 6.900387e-02	ci left: 2.338656e-02	ci right 2.506552e-02	k: 3148	n:130000
Cons ci ratio: 1.104288e-01	ci left: 9.069582e-03	ci right 1.013708e-02	k: 1247	n:130000
KS ci ratio: 1.531142e-02	ci left: 3.326184e-01	ci right 3.377582e-01	k: 43574	n:130000
ASCL3   130000 perm   32 sec   (4115 perm/sec)   p_kst 3.351846e-01   p_cons 9.592308e-03   p_joint 2.421538e-02

Joint ci ratio: 6.645597e-02	ci left: 2.344350e-02	ci right 2.506200e-02	k: 3394	n:140000
Cons ci ratio: 1.062922e-01	ci left: 9.109745e-03	ci right 1.013929e-02	k: 1346	n:140000
KS ci ratio: 1.475278e-02	ci left: 3.327628e-01	ci right 3.377155e-01	k: 46933	n:140000
ASCL3   140000 perm   35 sec   (4047 perm/sec)   p_kst 3.352357e-01   p_cons 9.614286e-03   p_joint 2.424286e-02

Joint ci ratio: 6.610376e-02	ci left: 2.214891e-02	ci right 2.366961e-02	k: 3435	n:150000
Cons ci ratio: 1.029844e-01	ci left: 9.073733e-03	ci right 1.006536e-02	k: 1434	n:150000
KS ci ratio: 1.425263e-02	ci left: 3.328442e-01	ci right 3.376288e-01	k: 50285	n:150000
ASCL3   150000 perm   38 sec   (3977 perm/sec)   p_kst 3.352333e-01   p_cons 9.560000e-03   p_joint 2.290000e-02

Joint ci ratio: 5.797368e-02	ci left: 2.697525e-02	ci right 2.859192e-02	k: 4444	n:160000
Cons ci ratio: 9.924611e-02	ci left: 9.176765e-03	ci right 1.014113e-02	k: 1544	n:160000
KS ci ratio: 1.378756e-02	ci left: 3.333236e-01	ci right 3.379574e-01	k: 53702	n:160000
ASCL3   160000 perm   41 sec   (3918 perm/sec)   p_kst 3.356375e-01   p_cons 9.650000e-03   p_joint 2.777500e-02

Outputting figure to mutsig2_images.part000000000012/ASCL3.4_550_160000_0.33564_0.00965_0.027775.png
                gene_name: ASCL3
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 46 percent done.
ASMTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
ASMTL   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.093000e-01   p_cons 9.240000e-01   p_joint 2.381000e-01

Joint ci ratio: 4.511920e-02	ci left: 2.677773e-01	ci right 2.801885e-01	k: 5479	n:20000
Cons ci ratio: 7.877548e-03	ci left: 9.215692e-01	ci right 9.289066e-01	k: 18506	n:20000
KS ci ratio: 7.864204e-02	ci left: 1.061377e-01	ci right 1.148759e-01	k: 2209	n:20000
ASMTL   20000 perm   4 sec   (4881 perm/sec)   p_kst 1.104500e-01   p_cons 9.253000e-01   p_joint 2.739500e-01

Outputting figure to mutsig2_images.part000000000012/ASMTL.4_1918_20000_0.11045_0.9253_0.27395.png
                gene_name: ASMTL
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 48 percent done.
ASXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793668e-02	ci left: 8.193399e-01	ci right 8.342692e-01	k: 8269	n:10000
Cons ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
KS ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
ASXL1   10000 perm   2 sec   (4701 perm/sec)   p_kst 7.422000e-01   p_cons 4.039000e-01   p_joint 8.269000e-01

Outputting figure to mutsig2_images.part000000000012/ASXL1.4_4684_10000_0.7422_0.4039_0.8269.png
                gene_name: ASXL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 50 percent done.
ATAD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.662153e-02	ci left: 5.240640e-01	ci right 5.437162e-01	k: 5339	n:10000
Cons ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KS ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
ATAD2B   10000 perm   2 sec   (4499 perm/sec)   p_kst 3.769000e-01   p_cons 4.433000e-01   p_joint 5.339000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD2B.4_4489_10000_0.3769_0.4433_0.5339.png
                gene_name: ATAD2B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 52 percent done.
ASAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
KS ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
ASAH2   10000 perm   2 sec   (5550 perm/sec)   p_kst 2.767000e-01   p_cons 2.654000e-01   p_joint 3.812000e-01

Outputting figure to mutsig2_images.part000000000012/ASAH2.3_2423_10000_0.2767_0.2654_0.3812.png
                gene_name: ASAH2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 54 percent done.
ASAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
ASAM   10000 perm   2 sec   (6211 perm/sec)   p_kst 3.764000e-01   p_cons 9.788000e-01   p_joint 5.046000e-01

Outputting figure to mutsig2_images.part000000000012/ASAM.3_1150_10000_0.3764_0.9788_0.5046.png
                gene_name: ASAM
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 56 percent done.
ASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
Cons ci ratio: 1.643060e-02	ci left: 8.434611e-01	ci right 8.575341e-01	k: 8506	n:10000
KS ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
ASL   10000 perm   2 sec   (5986 perm/sec)   p_kst 3.090000e-01   p_cons 8.506000e-01   p_joint 3.846000e-01

Outputting figure to mutsig2_images.part000000000012/ASL.3_1459_10000_0.309_0.8506_0.3846.png
                gene_name: ASL
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 58 percent done.
ASNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
Cons ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
KS ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
ASNS   10000 perm   2 sec   (6041 perm/sec)   p_kst 4.036000e-01   p_cons 3.870000e-01   p_joint 9.423000e-01

Outputting figure to mutsig2_images.part000000000012/ASNS.3_1730_10000_0.4036_0.387_0.9423.png
                gene_name: ASNS
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 60 percent done.
ASS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
ASS1   10000 perm   2 sec   (6244 perm/sec)   p_kst 5.461000e-01   p_cons 2.696000e-01   p_joint 6.168000e-01

Outputting figure to mutsig2_images.part000000000012/ASS1.3_1295_10000_0.5461_0.2696_0.6168.png
                gene_name: ASS1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 62 percent done.
ATAD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
ATAD5   10000 perm   2 sec   (4721 perm/sec)   p_kst 9.794000e-01   p_cons 2.500000e-03   p_joint 5.390000e-02

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
KS ci ratio: 3.862250e-03	ci left: 9.790114e-01	ci right 9.828469e-01	k: 19620	n:20000
ATAD5   20000 perm   5 sec   (4252 perm/sec)   p_kst 9.810000e-01   p_cons 2.500000e-03   p_joint 1.955000e-02

Joint ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
Cons ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
KS ci ratio: 3.171880e-03	ci left: 9.791484e-01	ci right 9.822908e-01	k: 29423	n:30000
ATAD5   30000 perm   7 sec   (4045 perm/sec)   p_kst 9.807667e-01   p_cons 2.600000e-03   p_joint 1.423333e-02

Joint ci ratio: 2.577298e-01	ci left: 5.009201e-03	ci right 6.513914e-03	k: 229	n:40000
Cons ci ratio: 3.698817e-01	ci left: 2.283367e-03	ci right 3.340868e-03	k: 111	n:40000
KS ci ratio: 2.769315e-03	ci left: 9.790453e-01	ci right 9.817843e-01	k: 39218	n:40000
ATAD5   40000 perm   10 sec   (3934 perm/sec)   p_kst 9.804500e-01   p_cons 2.775000e-03   p_joint 5.725000e-03

Joint ci ratio: 1.384489e-01	ci left: 1.468651e-02	ci right 1.689023e-02	k: 788	n:50000
Cons ci ratio: 3.433561e-01	ci left: 2.154454e-03	ci right 3.064827e-03	k: 129	n:50000
KS ci ratio: 2.455276e-03	ci left: 9.795383e-01	ci right 9.819655e-01	k: 49039	n:50000
ATAD5   50000 perm   13 sec   (3846 perm/sec)   p_kst 9.807800e-01   p_cons 2.580000e-03   p_joint 1.576000e-02

Joint ci ratio: 1.339785e-01	ci left: 1.312347e-02	ci right 1.502396e-02	k: 843	n:60000
Cons ci ratio: 3.047492e-01	ci left: 2.331456e-03	ci right 3.184439e-03	k: 164	n:60000
KS ci ratio: 2.252824e-03	ci left: 9.794474e-01	ci right 9.816725e-01	k: 58835	n:60000
ATAD5   60000 perm   16 sec   (3768 perm/sec)   p_kst 9.805833e-01   p_cons 2.733333e-03   p_joint 1.405000e-02

Joint ci ratio: 1.618112e-01	ci left: 7.641210e-03	ci right 9.000020e-03	k: 581	n:70000
Cons ci ratio: 2.855092e-01	ci left: 2.302655e-03	ci right 3.082336e-03	k: 187	n:70000
KS ci ratio: 2.065829e-03	ci left: 9.799027e-01	ci right 9.819429e-01	k: 68666	n:70000
ATAD5   70000 perm   19 sec   (3695 perm/sec)   p_kst 9.809429e-01   p_cons 2.671429e-03   p_joint 8.300000e-03

Joint ci ratio: 1.564378e-01	ci left: 7.178016e-03	ci right 8.408082e-03	k: 622	n:80000
Cons ci ratio: 2.695061e-01	ci left: 2.282329e-03	ci right 3.004493e-03	k: 210	n:80000
KS ci ratio: 1.932599e-03	ci left: 9.799660e-01	ci right 9.818739e-01	k: 78475	n:80000
ATAD5   80000 perm   22 sec   (3636 perm/sec)   p_kst 9.809375e-01   p_cons 2.625000e-03   p_joint 7.775000e-03

Joint ci ratio: 1.496445e-01	ci left: 7.000182e-03	ci right 8.143012e-03	k: 680	n:90000
Cons ci ratio: 2.532254e-01	ci left: 2.319489e-03	ci right 3.002085e-03	k: 238	n:90000
KS ci ratio: 1.808098e-03	ci left: 9.803142e-01	ci right 9.820991e-01	k: 88310	n:90000
ATAD5   90000 perm   25 sec   (3578 perm/sec)   p_kst 9.812222e-01   p_cons 2.644444e-03   p_joint 7.555556e-03

Joint ci ratio: 1.389147e-01	ci left: 7.350950e-03	ci right 8.457879e-03	k: 789	n:100000
Cons ci ratio: 2.409395e-01	ci left: 2.322069e-03	ci right 2.967318e-03	k: 263	n:100000
KS ci ratio: 1.723724e-03	ci left: 9.801756e-01	ci right 9.818763e-01	k: 98104	n:100000
ATAD5   100000 perm   28 sec   (3525 perm/sec)   p_kst 9.810400e-01   p_cons 2.630000e-03   p_joint 7.890000e-03

Joint ci ratio: 1.128267e-01	ci left: 1.024175e-02	ci right 1.147515e-02	k: 1193	n:110000
Cons ci ratio: 2.302841e-01	ci left: 2.324834e-03	ci right 2.938222e-03	k: 288	n:110000
KS ci ratio: 1.649241e-03	ci left: 9.800831e-01	ci right 9.817096e-01	k: 107900	n:110000
ATAD5   110000 perm   32 sec   (3472 perm/sec)   p_kst 9.809091e-01   p_cons 2.618182e-03   p_joint 1.084545e-02

Joint ci ratio: 1.095883e-01	ci left: 9.971508e-03	ci right 1.113566e-02	k: 1265	n:120000
Cons ci ratio: 2.227128e-01	ci left: 2.288305e-03	ci right 2.869483e-03	k: 308	n:120000
KS ci ratio: 1.575516e-03	ci left: 9.802032e-01	ci right 9.817568e-01	k: 117719	n:120000
ATAD5   120000 perm   35 sec   (3422 perm/sec)   p_kst 9.809917e-01   p_cons 2.566667e-03   p_joint 1.054167e-02

Joint ci ratio: 1.070585e-01	ci left: 9.660902e-03	ci right 1.076111e-02	k: 1326	n:130000
Cons ci ratio: 2.142163e-01	ci left: 2.294071e-03	ci right 2.851564e-03	k: 333	n:130000
KS ci ratio: 1.514905e-03	ci left: 9.802040e-01	ci right 9.816975e-01	k: 127525	n:130000
ATAD5   130000 perm   39 sec   (3375 perm/sec)   p_kst 9.809615e-01   p_cons 2.561538e-03   p_joint 1.020000e-02

Joint ci ratio: 1.079637e-01	ci left: 8.824665e-03	ci right 9.838671e-03	k: 1305	n:140000
Cons ci ratio: 2.066235e-01	ci left: 2.299373e-03	ci right 2.835846e-03	k: 358	n:140000
KS ci ratio: 1.456320e-03	ci left: 9.803222e-01	ci right 9.817578e-01	k: 137347	n:140000
ATAD5   140000 perm   42 sec   (3327 perm/sec)   p_kst 9.810500e-01   p_cons 2.557143e-03   p_joint 9.321429e-03

Joint ci ratio: 1.089698e-01	ci left: 8.087012e-03	ci right 9.025466e-03	k: 1282	n:150000
Cons ci ratio: 2.024448e-01	ci left: 2.240953e-03	ci right 2.751914e-03	k: 373	n:150000
KS ci ratio: 1.405282e-03	ci left: 9.803914e-01	ci right 9.817766e-01	k: 147164	n:150000
ATAD5   150000 perm   46 sec   (3284 perm/sec)   p_kst 9.810933e-01   p_cons 2.486667e-03   p_joint 8.546667e-03

Joint ci ratio: 1.136937e-01	ci left: 6.955508e-03	ci right 7.799990e-03	k: 1179	n:160000
Cons ci ratio: 1.955094e-01	ci left: 2.261240e-03	ci right 2.757061e-03	k: 400	n:160000
KS ci ratio: 1.362919e-03	ci left: 9.803509e-01	ci right 9.816941e-01	k: 156965	n:160000
ATAD5   160000 perm   49 sec   (3238 perm/sec)   p_kst 9.810313e-01   p_cons 2.500000e-03   p_joint 7.368750e-03

Joint ci ratio: 9.689755e-02	ci left: 9.073025e-03	ci right 1.000264e-02	k: 1620	n:170000
Cons ci ratio: 1.899095e-01	ci left: 2.262592e-03	ci right 2.742860e-03	k: 424	n:170000
KS ci ratio: 1.322488e-03	ci left: 9.803637e-01	ci right 9.816668e-01	k: 166774	n:170000
ATAD5   170000 perm   53 sec   (3197 perm/sec)   p_kst 9.810235e-01   p_cons 2.494118e-03   p_joint 9.529412e-03

Joint ci ratio: 9.513345e-02	ci left: 8.899680e-03	ci right 9.794007e-03	k: 1681	n:180000
Cons ci ratio: 1.853868e-01	ci left: 2.248078e-03	ci right 2.712622e-03	k: 445	n:180000
KS ci ratio: 1.284495e-03	ci left: 9.804039e-01	ci right 9.816694e-01	k: 176588	n:180000
ATAD5   180000 perm   57 sec   (3157 perm/sec)   p_kst 9.810444e-01   p_cons 2.472222e-03   p_joint 9.338889e-03

Joint ci ratio: 9.527143e-02	ci left: 8.410624e-03	ci right 9.257096e-03	k: 1677	n:190000
Cons ci ratio: 1.796365e-01	ci left: 2.275420e-03	ci right 2.729445e-03	k: 474	n:190000
KS ci ratio: 1.248359e-03	ci left: 9.804777e-01	ci right 9.817076e-01	k: 186409	n:190000
ATAD5   190000 perm   61 sec   (3119 perm/sec)   p_kst 9.811000e-01   p_cons 2.494737e-03   p_joint 8.826316e-03

Joint ci ratio: 9.736190e-02	ci left: 7.648376e-03	ci right 8.435984e-03	k: 1607	n:200000
Cons ci ratio: 1.743901e-01	ci left: 2.300228e-03	ci right 2.744387e-03	k: 503	n:200000
KS ci ratio: 1.220835e-03	ci left: 9.803668e-01	ci right 9.815692e-01	k: 196195	n:200000
ATAD5   200000 perm   65 sec   (3079 perm/sec)   p_kst 9.809750e-01   p_cons 2.515000e-03   p_joint 8.035000e-03

Joint ci ratio: 9.665645e-02	ci left: 7.395633e-03	ci right 8.151382e-03	k: 1631	n:210000
Cons ci ratio: 1.692600e-01	ci left: 2.331968e-03	ci right 2.767658e-03	k: 534	n:210000
KS ci ratio: 1.191672e-03	ci left: 9.803732e-01	ci right 9.815468e-01	k: 206003	n:210000
ATAD5   210000 perm   69 sec   (3042 perm/sec)   p_kst 9.809667e-01   p_cons 2.542857e-03   p_joint 7.766667e-03

Joint ci ratio: 8.923416e-02	ci left: 8.307261e-03	ci right 9.087584e-03	k: 1912	n:220000
Cons ci ratio: 1.660344e-01	ci left: 2.317418e-03	ci right 2.741313e-03	k: 555	n:220000
KS ci ratio: 1.165778e-03	ci left: 9.803378e-01	ci right 9.814858e-01	k: 215802	n:220000
ATAD5   220000 perm   73 sec   (3005 perm/sec)   p_kst 9.809182e-01   p_cons 2.522727e-03   p_joint 8.690909e-03

Joint ci ratio: 9.052436e-02	ci left: 7.720715e-03	ci right 8.456980e-03	k: 1859	n:230000
Cons ci ratio: 1.624231e-01	ci left: 2.320889e-03	ci right 2.735285e-03	k: 580	n:230000
KS ci ratio: 1.141099e-03	ci left: 9.803191e-01	ci right 9.814426e-01	k: 225604	n:230000
ATAD5   230000 perm   77 sec   (2970 perm/sec)   p_kst 9.808870e-01   p_cons 2.521739e-03   p_joint 8.082609e-03

Joint ci ratio: 9.256753e-02	ci left: 7.073206e-03	ci right 7.763770e-03	k: 1779	n:240000
Cons ci ratio: 1.595664e-01	ci left: 2.308159e-03	ci right 2.712338e-03	k: 601	n:240000
KS ci ratio: 1.115189e-03	ci left: 9.803952e-01	ci right 9.814932e-01	k: 235428	n:240000
ATAD5   240000 perm   82 sec   (2936 perm/sec)   p_kst 9.809500e-01   p_cons 2.504167e-03   p_joint 7.412500e-03

Joint ci ratio: 9.099856e-02	ci left: 7.032578e-03	ci right 7.706918e-03	k: 1841	n:250000
Cons ci ratio: 1.556083e-01	ci left: 2.334946e-03	ci right 2.732727e-03	k: 632	n:250000
KS ci ratio: 1.092828e-03	ci left: 9.804005e-01	ci right 9.814764e-01	k: 245236	n:250000
ATAD5   250000 perm   86 sec   (2903 perm/sec)   p_kst 9.809440e-01   p_cons 2.528000e-03   p_joint 7.364000e-03

Joint ci ratio: 9.064060e-02	ci left: 6.818442e-03	ci right 7.469540e-03	k: 1856	n:260000
Cons ci ratio: 1.532084e-01	ci left: 2.319090e-03	ci right 2.707517e-03	k: 652	n:260000
KS ci ratio: 1.071651e-03	ci left: 9.804094e-01	ci right 9.814644e-01	k: 255045	n:260000
ATAD5   260000 perm   91 sec   (2871 perm/sec)   p_kst 9.809423e-01   p_cons 2.507692e-03   p_joint 7.138462e-03

Joint ci ratio: 8.641893e-02	ci left: 7.235995e-03	ci right 7.893160e-03	k: 2041	n:270000
Cons ci ratio: 1.501354e-01	ci left: 2.329403e-03	ci right 2.711030e-03	k: 679	n:270000
KS ci ratio: 1.052179e-03	ci left: 9.803992e-01	ci right 9.814349e-01	k: 264849	n:270000
ATAD5   270000 perm   95 sec   (2838 perm/sec)   p_kst 9.809222e-01   p_cons 2.514815e-03   p_joint 7.559259e-03

Joint ci ratio: 8.493509e-02	ci left: 7.229199e-03	ci right 7.873914e-03	k: 2113	n:280000
Cons ci ratio: 1.484022e-01	ci left: 2.301216e-03	ci right 2.673486e-03	k: 695	n:280000
KS ci ratio: 1.032844e-03	ci left: 9.804224e-01	ci right 9.814390e-01	k: 274662	n:280000
ATAD5   280000 perm   100 sec   (2806 perm/sec)   p_kst 9.809357e-01   p_cons 2.482143e-03   p_joint 7.546429e-03

Joint ci ratio: 8.456426e-02	ci left: 7.044016e-03	ci right 7.669338e-03	k: 2132	n:290000
Cons ci ratio: 1.472467e-01	ci left: 2.258388e-03	ci right 2.620635e-03	k: 706	n:290000
KS ci ratio: 1.013881e-03	ci left: 9.804686e-01	ci right 9.814666e-01	k: 284482	n:290000
ATAD5   290000 perm   104 sec   (2776 perm/sec)   p_kst 9.809724e-01   p_cons 2.434483e-03   p_joint 7.351724e-03

Joint ci ratio: 7.584050e-02	ci left: 8.491777e-03	ci right 9.164430e-03	k: 2647	n:300000
Cons ci ratio: 1.447103e-01	ci left: 2.263399e-03	ci right 2.619655e-03	k: 731	n:300000
KS ci ratio: 9.960109e-04	ci left: 9.805085e-01	ci right 9.814888e-01	k: 294301	n:300000
ATAD5   300000 perm   109 sec   (2748 perm/sec)   p_kst 9.810033e-01   p_cons 2.436667e-03   p_joint 8.823333e-03

Joint ci ratio: 7.455594e-02	ci left: 8.509045e-03	ci right 9.171154e-03	k: 2739	n:310000
Cons ci ratio: 1.423948e-01	ci left: 2.265025e-03	ci right 2.615348e-03	k: 755	n:310000
KS ci ratio: 9.787968e-04	ci left: 9.805557e-01	ci right 9.815191e-01	k: 304123	n:310000
ATAD5   310000 perm   114 sec   (2720 perm/sec)   p_kst 9.810419e-01   p_cons 2.435484e-03   p_joint 8.835484e-03

Joint ci ratio: 7.473157e-02	ci left: 8.206289e-03	ci right 8.846409e-03	k: 2727	n:320000
Cons ci ratio: 1.397389e-01	ci left: 2.281671e-03	ci right 2.627438e-03	k: 784	n:320000
KS ci ratio: 9.633324e-04	ci left: 9.805653e-01	ci right 9.815134e-01	k: 313934	n:320000
ATAD5   320000 perm   119 sec   (2693 perm/sec)   p_kst 9.810437e-01   p_cons 2.450000e-03   p_joint 8.521875e-03

Joint ci ratio: 7.537067e-02	ci left: 7.823751e-03	ci right 8.439478e-03	k: 2682	n:330000
Cons ci ratio: 1.379072e-01	ci left: 2.273955e-03	ci right 2.613665e-03	k: 805	n:330000
KS ci ratio: 9.478828e-04	ci left: 9.806020e-01	ci right 9.815349e-01	k: 323754	n:330000
ATAD5   330000 perm   124 sec   (2665 perm/sec)   p_kst 9.810727e-01   p_cons 2.439394e-03   p_joint 8.127273e-03

Joint ci ratio: 7.602504e-02	ci left: 7.463741e-03	ci right 8.056460e-03	k: 2637	n:340000
Cons ci ratio: 1.358988e-01	ci left: 2.275244e-03	ci right 2.609797e-03	k: 829	n:340000
KS ci ratio: 9.345563e-04	ci left: 9.805801e-01	ci right 9.814999e-01	k: 333555	n:340000
ATAD5   340000 perm   129 sec   (2638 perm/sec)   p_kst 9.810441e-01   p_cons 2.438235e-03   p_joint 7.755882e-03

Joint ci ratio: 7.725266e-02	ci left: 7.020634e-03	ci right 7.587570e-03	k: 2555	n:350000
Cons ci ratio: 1.334286e-01	ci left: 2.295827e-03	ci right 2.626783e-03	k: 860	n:350000
KS ci ratio: 9.207135e-04	ci left: 9.806030e-01	ci right 9.815090e-01	k: 343371	n:350000
ATAD5   350000 perm   134 sec   (2611 perm/sec)   p_kst 9.810600e-01   p_cons 2.457143e-03   p_joint 7.300000e-03

Joint ci ratio: 7.668848e-02	ci left: 6.929127e-03	ci right 7.484405e-03	k: 2593	n:360000
Cons ci ratio: 1.312360e-01	ci left: 2.309943e-03	ci right 2.637036e-03	k: 889	n:360000
KS ci ratio: 9.067207e-04	ci left: 9.806555e-01	ci right 9.815478e-01	k: 353198	n:360000
ATAD5   360000 perm   139 sec   (2584 perm/sec)   p_kst 9.811056e-01   p_cons 2.469444e-03   p_joint 7.202778e-03

Joint ci ratio: 7.568876e-02	ci left: 6.924786e-03	ci right 7.472163e-03	k: 2662	n:370000
Cons ci ratio: 1.299299e-01	ci left: 2.294571e-03	ci right 2.616003e-03	k: 907	n:370000
KS ci ratio: 8.942553e-04	ci left: 9.806670e-01	ci right 9.815470e-01	k: 363011	n:370000
ATAD5   370000 perm   145 sec   (2559 perm/sec)   p_kst 9.811108e-01   p_cons 2.451351e-03   p_joint 7.194595e-03

Joint ci ratio: 7.569598e-02	ci left: 6.742531e-03	ci right 7.275554e-03	k: 2662	n:380000
Cons ci ratio: 1.287317e-01	ci left: 2.277475e-03	ci right 2.593346e-03	k: 924	n:380000
KS ci ratio: 8.833548e-04	ci left: 9.806328e-01	ci right 9.815020e-01	k: 372807	n:380000
ATAD5   380000 perm   150 sec   (2535 perm/sec)   p_kst 9.810711e-01   p_cons 2.431579e-03   p_joint 7.005263e-03

Joint ci ratio: 7.472031e-02	ci left: 6.745758e-03	ci right 7.271863e-03	k: 2732	n:390000
Cons ci ratio: 1.269595e-01	ci left: 2.283614e-03	ci right 2.595647e-03	k: 950	n:390000
KS ci ratio: 8.727195e-04	ci left: 9.806055e-01	ci right 9.814642e-01	k: 382605	n:390000
ATAD5   390000 perm   155 sec   (2511 perm/sec)   p_kst 9.810385e-01   p_cons 2.435897e-03   p_joint 7.005128e-03

Joint ci ratio: 7.496200e-02	ci left: 6.535383e-03	ci right 7.046801e-03	k: 2715	n:400000
Cons ci ratio: 1.253228e-01	ci left: 2.287051e-03	ci right 2.595227e-03	k: 975	n:400000
KS ci ratio: 8.621097e-04	ci left: 9.805949e-01	ci right 9.814431e-01	k: 392409	n:400000
ATAD5   400000 perm   161 sec   (2488 perm/sec)   p_kst 9.810225e-01   p_cons 2.437500e-03   p_joint 6.787500e-03

Joint ci ratio: 6.747025e-02	ci left: 7.890245e-03	ci right 8.443569e-03	k: 3347	n:410000
Cons ci ratio: 1.235624e-01	ci left: 2.297437e-03	ci right 2.602345e-03	k: 1003	n:410000
KS ci ratio: 8.519328e-04	ci left: 9.805824e-01	ci right 9.814205e-01	k: 402212	n:410000
ATAD5   410000 perm   166 sec   (2464 perm/sec)   p_kst 9.810049e-01   p_cons 2.446341e-03   p_joint 8.163415e-03

Joint ci ratio: 6.786619e-02	ci left: 7.613400e-03	ci right 8.150566e-03	k: 3309	n:420000
Cons ci ratio: 1.223504e-01	ci left: 2.288890e-03	ci right 2.589469e-03	k: 1023	n:420000
KS ci ratio: 8.413009e-04	ci left: 9.806066e-01	ci right 9.814343e-01	k: 412030	n:420000
ATAD5   420000 perm   172 sec   (2441 perm/sec)   p_kst 9.810238e-01   p_cons 2.435714e-03   p_joint 7.878571e-03

Joint ci ratio: 6.780025e-02	ci left: 7.452326e-03	ci right 7.977596e-03	k: 3316	n:430000
Cons ci ratio: 1.209414e-01	ci left: 2.289776e-03	ci right 2.586760e-03	k: 1047	n:430000
KS ci ratio: 8.314720e-04	ci left: 9.806110e-01	ci right 9.814290e-01	k: 421840	n:430000
ATAD5   430000 perm   178 sec   (2419 perm/sec)   p_kst 9.810233e-01   p_cons 2.434884e-03   p_joint 7.711628e-03

Joint ci ratio: 6.721662e-02	ci left: 7.412543e-03	ci right 7.930336e-03	k: 3374	n:440000
Cons ci ratio: 1.193570e-01	ci left: 2.299460e-03	ci right 2.593517e-03	k: 1075	n:440000
KS ci ratio: 8.212771e-04	ci left: 9.806474e-01	ci right 9.814553e-01	k: 431664	n:440000
ATAD5   440000 perm   184 sec   (2396 perm/sec)   p_kst 9.810545e-01   p_cons 2.443182e-03   p_joint 7.668182e-03

Joint ci ratio: 6.338899e-02	ci left: 8.159463e-03	ci right 8.695785e-03	k: 3791	n:450000
Cons ci ratio: 1.182095e-01	ci left: 2.293640e-03	ci right 2.583936e-03	k: 1096	n:450000
KS ci ratio: 8.128053e-04	ci left: 9.806193e-01	ci right 9.814189e-01	k: 441460	n:450000
ATAD5   450000 perm   189 sec   (2375 perm/sec)   p_kst 9.810222e-01   p_cons 2.435556e-03   p_joint 8.424444e-03

Joint ci ratio: 6.353013e-02	ci left: 7.947825e-03	ci right 8.471441e-03	k: 3775	n:460000
Cons ci ratio: 1.170420e-01	ci left: 2.290197e-03	ci right 2.576997e-03	k: 1118	n:460000
KS ci ratio: 8.037437e-04	ci left: 9.806321e-01	ci right 9.814227e-01	k: 451274	n:460000
ATAD5   460000 perm   195 sec   (2353 perm/sec)   p_kst 9.810304e-01   p_cons 2.430435e-03   p_joint 8.206522e-03

Joint ci ratio: 6.298318e-02	ci left: 7.916923e-03	ci right 8.433849e-03	k: 3841	n:470000
Cons ci ratio: 1.159084e-01	ci left: 2.286914e-03	ci right 2.570339e-03	k: 1140	n:470000
KS ci ratio: 7.947056e-04	ci left: 9.806572e-01	ci right 9.814390e-01	k: 461094	n:470000
ATAD5   470000 perm   202 sec   (2332 perm/sec)   p_kst 9.810511e-01   p_cons 2.425532e-03   p_joint 8.172340e-03

Joint ci ratio: 6.275846e-02	ci left: 7.809390e-03	ci right 8.317409e-03	k: 3869	n:480000
Cons ci ratio: 1.146098e-01	ci left: 2.291876e-03	ci right 2.572518e-03	k: 1166	n:480000
KS ci ratio: 7.860970e-04	ci left: 9.806750e-01	ci right 9.814483e-01	k: 470911	n:480000
ATAD5   480000 perm   208 sec   (2310 perm/sec)   p_kst 9.810646e-01   p_cons 2.429167e-03   p_joint 8.060417e-03

Joint ci ratio: 6.334368e-02	ci left: 7.509373e-03	ci right 8.002597e-03	k: 3799	n:490000
Cons ci ratio: 1.135927e-01	ci left: 2.286736e-03	ci right 2.564097e-03	k: 1187	n:490000
KS ci ratio: 7.775481e-04	ci left: 9.807025e-01	ci right 9.814673e-01	k: 480733	n:490000
ATAD5   490000 perm   214 sec   (2289 perm/sec)   p_kst 9.810878e-01   p_cons 2.422449e-03   p_joint 7.753061e-03

Joint ci ratio: 6.342436e-02	ci left: 7.341451e-03	ci right 7.824282e-03	k: 3790	n:500000
Cons ci ratio: 1.125555e-01	ci left: 2.283757e-03	ci right 2.558060e-03	k: 1209	n:500000
KS ci ratio: 7.692296e-04	ci left: 9.807309e-01	ci right 9.814875e-01	k: 490556	n:500000
ATAD5   500000 perm   220 sec   (2269 perm/sec)   p_kst 9.811120e-01   p_cons 2.418000e-03   p_joint 7.580000e-03

Joint ci ratio: 6.522098e-02	ci left: 6.803871e-03	ci right 7.264501e-03	k: 3586	n:510000
Cons ci ratio: 1.117739e-01	ci left: 2.271375e-03	ci right 2.542171e-03	k: 1226	n:510000
KS ci ratio: 7.628225e-04	ci left: 9.806770e-01	ci right 9.814273e-01	k: 500338	n:510000
ATAD5   510000 perm   227 sec   (2249 perm/sec)   p_kst 9.810549e-01   p_cons 2.403922e-03   p_joint 7.031373e-03

Joint ci ratio: 6.304948e-02	ci left: 7.146127e-03	ci right 7.613233e-03	k: 3836	n:520000
Cons ci ratio: 1.107853e-01	ci left: 2.268824e-03	ci right 2.536768e-03	k: 1248	n:520000
KS ci ratio: 7.552774e-04	ci left: 9.806893e-01	ci right 9.814322e-01	k: 510153	n:520000
ATAD5   520000 perm   233 sec   (2229 perm/sec)   p_kst 9.810635e-01   p_cons 2.400000e-03   p_joint 7.376923e-03

Joint ci ratio: 6.236185e-02	ci left: 7.169160e-03	ci right 7.632476e-03	k: 3921	n:530000
Cons ci ratio: 1.099527e-01	ci left: 2.260875e-03	ci right 2.525743e-03	k: 1267	n:530000
KS ci ratio: 7.480277e-04	ci left: 9.806974e-01	ci right 9.814331e-01	k: 519966	n:530000
ATAD5   530000 perm   240 sec   (2210 perm/sec)   p_kst 9.810679e-01   p_cons 2.390566e-03   p_joint 7.398113e-03

Joint ci ratio: 6.182851e-02	ci left: 7.160367e-03	ci right 7.619016e-03	k: 3989	n:540000
Cons ci ratio: 1.088001e-01	ci left: 2.267640e-03	ci right 2.530337e-03	k: 1294	n:540000
KS ci ratio: 7.410198e-04	ci left: 9.807034e-01	ci right 9.814322e-01	k: 529778	n:540000
ATAD5   540000 perm   246 sec   (2192 perm/sec)   p_kst 9.810704e-01   p_cons 2.396296e-03   p_joint 7.387037e-03

Joint ci ratio: 5.919933e-02	ci left: 7.674883e-03	ci right 8.144868e-03	k: 4349	n:550000
Cons ci ratio: 1.079700e-01	ci left: 2.261787e-03	ci right 2.521681e-03	k: 1314	n:550000
KS ci ratio: 7.340613e-04	ci left: 9.807165e-01	ci right 9.814384e-01	k: 539594	n:550000
ATAD5   550000 perm   253 sec   (2173 perm/sec)   p_kst 9.810800e-01   p_cons 2.389091e-03   p_joint 7.907273e-03

Joint ci ratio: 5.949369e-02	ci left: 7.463920e-03	ci right 7.923338e-03	k: 4307	n:560000
Cons ci ratio: 1.066790e-01	ci left: 2.277008e-03	ci right 2.535326e-03	k: 1346	n:560000
KS ci ratio: 7.274001e-04	ci left: 9.807237e-01	ci right 9.814391e-01	k: 549407	n:560000
ATAD5   560000 perm   260 sec   (2155 perm/sec)   p_kst 9.810839e-01   p_cons 2.403571e-03   p_joint 7.691071e-03

Joint ci ratio: 6.062087e-02	ci left: 7.061627e-03	ci right 7.504806e-03	k: 4150	n:570000
Cons ci ratio: 1.058961e-01	ci left: 2.271215e-03	ci right 2.526867e-03	k: 1366	n:570000
KS ci ratio: 7.205421e-04	ci left: 9.807502e-01	ci right 9.814589e-01	k: 559231	n:570000
ATAD5   570000 perm   267 sec   (2137 perm/sec)   p_kst 9.811070e-01   p_cons 2.396491e-03   p_joint 7.280702e-03

Joint ci ratio: 6.056595e-02	ci left: 6.953448e-03	ci right 7.389428e-03	k: 4158	n:580000
Cons ci ratio: 1.051682e-01	ci left: 2.263950e-03	ci right 2.516924e-03	k: 1385	n:580000
KS ci ratio: 7.128756e-04	ci left: 9.808281e-01	ci right 9.815292e-01	k: 569085	n:580000
ATAD5   580000 perm   274 sec   (2120 perm/sec)   p_kst 9.811810e-01   p_cons 2.387931e-03   p_joint 7.168966e-03

Joint ci ratio: 6.004125e-02	ci left: 6.957456e-03	ci right 7.389777e-03	k: 4231	n:590000
Cons ci ratio: 1.041583e-01	ci left: 2.270143e-03	ci right 2.521224e-03	k: 1412	n:590000
KS ci ratio: 7.071585e-04	ci left: 9.808126e-01	ci right 9.815081e-01	k: 578886	n:590000
ATAD5   590000 perm   281 sec   (2103 perm/sec)   p_kst 9.811627e-01   p_cons 2.393220e-03   p_joint 7.171186e-03

Joint ci ratio: 5.959272e-02	ci left: 6.946569e-03	ci right 7.374877e-03	k: 4295	n:600000
Cons ci ratio: 1.032849e-01	ci left: 2.271270e-03	ci right 2.520241e-03	k: 1436	n:600000
KS ci ratio: 7.015130e-04	ci left: 9.808010e-01	ci right 9.814910e-01	k: 588689	n:600000
ATAD5   600000 perm   288 sec   (2085 perm/sec)   p_kst 9.811483e-01   p_cons 2.393333e-03   p_joint 7.158333e-03

Joint ci ratio: 6.054008e-02	ci left: 6.619513e-03	ci right 7.034372e-03	k: 4163	n:610000
Cons ci ratio: 1.022927e-01	ci left: 2.278758e-03	ci right 2.526006e-03	k: 1464	n:610000
KS ci ratio: 6.957844e-04	ci left: 9.808015e-01	ci right 9.814857e-01	k: 598499	n:610000
ATAD5   610000 perm   295 sec   (2067 perm/sec)   p_kst 9.811459e-01   p_cons 2.400000e-03   p_joint 6.824590e-03

Joint ci ratio: 5.746295e-02	ci left: 7.235862e-03	ci right 7.665534e-03	k: 4618	n:620000
Cons ci ratio: 1.013968e-01	ci left: 2.282871e-03	ci right 2.528267e-03	k: 1490	n:620000
KS ci ratio: 6.898930e-04	ci left: 9.808182e-01	ci right 9.814967e-01	k: 608319	n:620000
ATAD5   620000 perm   302 sec   (2051 perm/sec)   p_kst 9.811597e-01   p_cons 2.403226e-03   p_joint 7.448387e-03

Joint ci ratio: 5.705715e-02	ci left: 7.224268e-03	ci right 7.650122e-03	k: 4684	n:630000
Cons ci ratio: 1.005239e-01	ci left: 2.286863e-03	ci right 2.530447e-03	k: 1516	n:630000
KS ci ratio: 6.846772e-04	ci left: 9.808056e-01	ci right 9.814789e-01	k: 618121	n:630000
ATAD5   630000 perm   310 sec   (2035 perm/sec)   p_kst 9.811444e-01   p_cons 2.406349e-03   p_joint 7.434921e-03

Joint ci ratio: 5.709119e-02	ci left: 7.103675e-03	ci right 7.522678e-03	k: 4679	n:640000
Cons ci ratio: 9.986807e-02	ci left: 2.281597e-03	ci right 2.522942e-03	k: 1536	n:640000
KS ci ratio: 6.797209e-04	ci left: 9.807855e-01	ci right 9.814539e-01	k: 627918	n:640000
ATAD5   640000 perm   317 sec   (2020 perm/sec)   p_kst 9.811219e-01   p_cons 2.400000e-03   p_joint 7.310937e-03

Outputting figure to mutsig2_images.part000000000012/ATAD5.3_5627_640000_0.98112_0.0024_0.0073109.png
                gene_name: ATAD5
               theta_stop: 0.100 
                    nperm: 640000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0025 
                  p_joint: 0.0073 
     ci_joint_bounds_left: 0.0071 
    ci_joint_bounds_right: 0.0075 

Current progress: 63 percent done.
ATF7IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
Cons ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
KS ci ratio: 2.598517e-02	ci left: 6.855679e-01	ci right 7.037185e-01	k: 6947	n:10000
ATF7IP   10000 perm   2 sec   (5009 perm/sec)   p_kst 6.947000e-01   p_cons 2.301000e-01   p_joint 7.331000e-01

Outputting figure to mutsig2_images.part000000000012/ATF7IP.3_3869_10000_0.6947_0.2301_0.7331.png
                gene_name: ATF7IP
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 65 percent done.
ATG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.289489e-02	ci left: 4.452043e-01	ci right 4.648220e-01	k: 4550	n:10000
KS ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
ATG3   10000 perm   2 sec   (6090 perm/sec)   p_kst 8.307000e-01   p_cons 4.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATG3.3_993_10000_0.8307_0.455_1.png
                gene_name: ATG3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ASAH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
Cons ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KS ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
ASAH1   10000 perm   1 sec   (6690 perm/sec)   p_kst 2.388000e-01   p_cons 1.139000e-01   p_joint 7.545000e-01

Joint ci ratio: 4.986518e-02	ci left: 2.301288e-01	ci right 2.419480e-01	k: 4720	n:20000
Cons ci ratio: 7.754189e-02	ci left: 1.088895e-01	ci right 1.177232e-01	k: 2265	n:20000
KS ci ratio: 4.930486e-02	ci left: 2.341933e-01	ci right 2.460823e-01	k: 4802	n:20000
ASAH1   20000 perm   3 sec   (5729 perm/sec)   p_kst 2.401000e-01   p_cons 1.132500e-01   p_joint 2.360000e-01

Outputting figure to mutsig2_images.part000000000012/ASAH1.2_1399_20000_0.2401_0.11325_0.236.png
                gene_name: ASAH1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 69 percent done.
ASAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
Cons ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
KS ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
ASAP3   10000 perm   2 sec   (5817 perm/sec)   p_kst 6.431000e-01   p_cons 3.540000e-02   p_joint 1.052000e-01

Joint ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
Cons ci ratio: 1.428166e-01	ci left: 3.370219e-02	ci right 3.893373e-02	k: 725	n:20000
KS ci ratio: 2.055403e-02	ci left: 6.385234e-01	ci right 6.518344e-01	k: 12904	n:20000
ASAP3   20000 perm   4 sec   (5091 perm/sec)   p_kst 6.452000e-01   p_cons 3.625000e-02   p_joint 7.125000e-02

Joint ci ratio: 6.996109e-02	ci left: 9.140941e-02	ci right 9.806931e-02	k: 2841	n:30000
Cons ci ratio: 1.139753e-01	ci left: 3.576737e-02	ci right 4.012270e-02	k: 1137	n:30000
KS ci ratio: 1.680086e-02	ci left: 6.392537e-01	ci right 6.501183e-01	k: 19341	n:30000
ASAP3   30000 perm   6 sec   (4846 perm/sec)   p_kst 6.447000e-01   p_cons 3.790000e-02   p_joint 9.470000e-02

Joint ci ratio: 6.278445e-02	ci left: 8.600517e-02	ci right 9.160469e-02	k: 3551	n:40000
Cons ci ratio: 9.967726e-02	ci left: 3.536653e-02	ci right 3.910104e-02	k: 1488	n:40000
KS ci ratio: 1.451279e-02	ci left: 6.411653e-01	ci right 6.505635e-01	k: 25835	n:40000
ASAP3   40000 perm   9 sec   (4684 perm/sec)   p_kst 6.458750e-01   p_cons 3.720000e-02   p_joint 8.877500e-02

Outputting figure to mutsig2_images.part000000000012/ASAP3.2_2835_40000_0.64587_0.0372_0.088775.png
                gene_name: ASAP3
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 71 percent done.
ASB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
ASB11   10000 perm   2 sec   (6656 perm/sec)   p_kst 4.952000e-01   p_cons 2.746000e-01   p_joint 3.463000e-01

Outputting figure to mutsig2_images.part000000000012/ASB11.2_1122_10000_0.4952_0.2746_0.3463.png
                gene_name: ASB11
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 73 percent done.
ASB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
ASB18   10000 perm   1 sec   (6765 perm/sec)   p_kst 9.328000e-01   p_cons 5.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB18.2_1424_10000_0.9328_0.5413_1.png
                gene_name: ASB18
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ASB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
Cons ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
KS ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
ASB7   10000 perm   2 sec   (6527 perm/sec)   p_kst 2.040000e-02   p_cons 6.146000e-01   p_joint 1.099000e-01

Joint ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
Cons ci ratio: 2.057648e-02	ci left: 6.380213e-01	ci right 6.513366e-01	k: 12894	n:20000
KS ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
ASB7   20000 perm   4 sec   (5675 perm/sec)   p_kst 1.965000e-02   p_cons 6.447000e-01   p_joint 8.880000e-02

Joint ci ratio: 6.379028e-02	ci left: 1.082223e-01	ci right 1.153864e-01	k: 3353	n:30000
Cons ci ratio: 1.673979e-02	ci left: 6.409260e-01	ci right 6.517790e-01	k: 19391	n:30000
KS ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
ASB7   30000 perm   6 sec   (5375 perm/sec)   p_kst 2.003333e-02   p_cons 6.463667e-01   p_joint 1.117667e-01

Joint ci ratio: 5.474240e-02	ci left: 1.105059e-01	ci right 1.167503e-01	k: 4544	n:40000
Cons ci ratio: 1.445098e-02	ci left: 6.431210e-01	ci right 6.525075e-01	k: 25913	n:40000
KS ci ratio: 1.353960e-01	ci left: 1.913373e-02	ci right 2.193649e-02	k: 820	n:40000
ASB7   40000 perm   8 sec   (5170 perm/sec)   p_kst 2.050000e-02   p_cons 6.478250e-01   p_joint 1.136000e-01

Joint ci ratio: 4.898386e-02	ci left: 1.107519e-01	ci right 1.163330e-01	k: 5676	n:50000
Cons ci ratio: 1.298735e-02	ci left: 6.414291e-01	ci right 6.498340e-01	k: 32282	n:50000
KS ci ratio: 1.194056e-01	ci left: 1.983873e-02	ci right 2.237730e-02	k: 1054	n:50000
ASB7   50000 perm   10 sec   (5014 perm/sec)   p_kst 2.108000e-02   p_cons 6.456400e-01   p_joint 1.135200e-01

Joint ci ratio: 4.475825e-02	ci left: 1.108073e-01	ci right 1.158969e-01	k: 6800	n:60000
Cons ci ratio: 1.184476e-02	ci left: 6.422251e-01	ci right 6.498941e-01	k: 38764	n:60000
KS ci ratio: 1.103908e-01	ci left: 1.944592e-02	ci right 2.173411e-02	k: 1234	n:60000
ASB7   60000 perm   12 sec   (4891 perm/sec)   p_kst 2.056667e-02   p_cons 6.460667e-01   p_joint 1.133333e-01

Joint ci ratio: 3.206793e-02	ci left: 1.730859e-01	ci right 1.787410e-01	k: 12313	n:70000
Cons ci ratio: 1.097219e-02	ci left: 6.422582e-01	ci right 6.493583e-01	k: 45207	n:70000
KS ci ratio: 1.020516e-01	ci left: 1.958839e-02	ci right 2.170875e-02	k: 1444	n:70000
ASB7   70000 perm   15 sec   (4788 perm/sec)   p_kst 2.062857e-02   p_cons 6.458143e-01   p_joint 1.759000e-01

Joint ci ratio: 2.999959e-02	ci left: 1.732424e-01	ci right 1.785312e-01	k: 14070	n:80000
Cons ci ratio: 1.024034e-02	ci left: 6.435265e-01	ci right 6.501628e-01	k: 51748	n:80000
KS ci ratio: 9.497517e-02	ci left: 1.985884e-02	ci right 2.185112e-02	k: 1667	n:80000
ASB7   80000 perm   17 sec   (4681 perm/sec)   p_kst 2.083750e-02   p_cons 6.468500e-01   p_joint 1.758750e-01

Outputting figure to mutsig2_images.part000000000012/ASB7.2_977_80000_0.020837_0.64685_0.17588.png
                gene_name: ASB7
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 77 percent done.
ASB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
KS ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
ASB9   10000 perm   1 sec   (6899 perm/sec)   p_kst 6.559000e-01   p_cons 5.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB9.2_942_10000_0.6559_0.5766_1.png
                gene_name: ASB9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ASGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
Cons ci ratio: 1.025626e-02	ci left: 9.310246e-01	ci right 9.407196e-01	k: 9360	n:10000
KS ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
ASGR2   10000 perm   2 sec   (6595 perm/sec)   p_kst 1.890000e-02   p_cons 9.360000e-01   p_joint 4.160000e-02

Joint ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
Cons ci ratio: 7.310460e-03	ci left: 9.314947e-01	ci right 9.383782e-01	k: 18700	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
ASGR2   20000 perm   3 sec   (5760 perm/sec)   p_kst 1.885000e-02   p_cons 9.350000e-01   p_joint 2.985000e-02

Joint ci ratio: 6.686024e-02	ci left: 9.935248e-02	ci right 1.062580e-01	k: 3083	n:30000
Cons ci ratio: 6.007572e-03	ci left: 9.313355e-01	ci right 9.369801e-01	k: 28026	n:30000
KS ci ratio: 1.618985e-01	ci left: 1.761317e-02	ci right 2.074760e-02	k: 574	n:30000
ASGR2   30000 perm   5 sec   (5461 perm/sec)   p_kst 1.913333e-02   p_cons 9.342000e-01   p_joint 1.027667e-01

Joint ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
Cons ci ratio: 5.235177e-03	ci left: 9.309379e-01	ci right 9.358489e-01	k: 37337	n:40000
KS ci ratio: 1.393465e-01	ci left: 1.804668e-02	ci right 2.077372e-02	k: 775	n:40000
ASGR2   40000 perm   8 sec   (5292 perm/sec)   p_kst 1.937500e-02   p_cons 9.334250e-01   p_joint 2.922500e-02

Joint ci ratio: 1.007971e-01	ci left: 2.787818e-02	ci right 3.085680e-02	k: 1467	n:50000
Cons ci ratio: 4.705103e-03	ci left: 9.305905e-01	ci right 9.349991e-01	k: 46641	n:50000
KS ci ratio: 1.244395e-01	ci left: 1.824778e-02	ci right 2.068846e-02	k: 972	n:50000
ASGR2   50000 perm   10 sec   (5134 perm/sec)   p_kst 1.944000e-02   p_cons 9.328200e-01   p_joint 2.934000e-02

Joint ci ratio: 9.181640e-02	ci left: 2.812799e-02	ci right 3.085111e-02	k: 1768	n:60000
Cons ci ratio: 4.305457e-03	ci left: 9.304801e-01	ci right 9.345113e-01	k: 55951	n:60000
KS ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
ASGR2   60000 perm   12 sec   (5002 perm/sec)   p_kst 1.941667e-02   p_cons 9.325167e-01   p_joint 2.946667e-02

Joint ci ratio: 8.445548e-02	ci left: 2.859474e-02	ci right 3.113014e-02	k: 2089	n:70000
Cons ci ratio: 4.246024e-03	ci left: 9.221278e-01	ci right 9.260656e-01	k: 64688	n:70000
KS ci ratio: 1.047092e-01	ci left: 1.859982e-02	ci right 2.066884e-02	k: 1373	n:70000
ASGR2   70000 perm   14 sec   (4898 perm/sec)   p_kst 1.961429e-02   p_cons 9.241143e-01   p_joint 2.984286e-02

Joint ci ratio: 8.396015e-02	ci left: 2.541019e-02	ci right 2.764932e-02	k: 2121	n:80000
Cons ci ratio: 3.958345e-03	ci left: 9.227360e-01	ci right 9.264081e-01	k: 73967	n:80000
KS ci ratio: 9.798754e-02	ci left: 1.865062e-02	ci right 2.058444e-02	k: 1568	n:80000
ASGR2   80000 perm   17 sec   (4762 perm/sec)   p_kst 1.960000e-02   p_cons 9.245875e-01   p_joint 2.651250e-02

Outputting figure to mutsig2_images.part000000000012/ASGR2.2_968_80000_0.0196_0.92459_0.026513.png
                gene_name: ASGR2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 81 percent done.
ASNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
Cons ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
KS ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
ASNA1   10000 perm   2 sec   (6622 perm/sec)   p_kst 6.663000e-01   p_cons 3.275000e-01   p_joint 7.644000e-01

Outputting figure to mutsig2_images.part000000000012/ASNA1.2_1075_10000_0.6663_0.3275_0.7644.png
                gene_name: ASNA1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 83 percent done.
ASPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 7.589188e-02	ci left: 2.025451e-01	ci right 2.186238e-01	k: 2105	n:10000
ASPA   10000 perm   1 sec   (6759 perm/sec)   p_kst 2.105000e-01   p_cons 1.260000e-01   p_joint 2.850000e-02

Joint ci ratio: 9.183013e-02	ci left: 7.965288e-02	ci right 8.736872e-02	k: 1669	n:20000
Cons ci ratio: 7.295216e-02	ci left: 1.215289e-01	ci right 1.307801e-01	k: 2522	n:20000
KS ci ratio: 5.378563e-02	ci left: 2.041746e-01	ci right 2.155099e-01	k: 4196	n:20000
ASPA   20000 perm   3 sec   (5854 perm/sec)   p_kst 2.098000e-01   p_cons 1.261000e-01   p_joint 8.345000e-02

Outputting figure to mutsig2_images.part000000000012/ASPA.2_966_20000_0.2098_0.1261_0.08345.png
                gene_name: ASPA
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 85 percent done.
ASPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
Cons ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
KS ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
ASPH   10000 perm   2 sec   (5680 perm/sec)   p_kst 5.030000e-02   p_cons 5.342000e-01   p_joint 6.840000e-02

Joint ci ratio: 2.889151e-02	ci left: 4.723049e-01	ci right 4.862011e-01	k: 9585	n:20000
Cons ci ratio: 2.566129e-02	ci left: 5.315108e-01	ci right 5.453780e-01	k: 10769	n:20000
KS ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
ASPH   20000 perm   4 sec   (5061 perm/sec)   p_kst 5.170000e-02   p_cons 5.384500e-01   p_joint 4.792500e-01

Joint ci ratio: 6.631039e-02	ci left: 1.008631e-01	ci right 1.078138e-01	k: 3129	n:30000
Cons ci ratio: 2.097040e-02	ci left: 5.323717e-01	ci right 5.436876e-01	k: 16141	n:30000
KS ci ratio: 9.793022e-02	ci left: 4.821186e-02	ci right 5.320894e-02	k: 1520	n:30000
ASPH   30000 perm   6 sec   (4770 perm/sec)   p_kst 5.066667e-02   p_cons 5.380333e-01   p_joint 1.043000e-01

Outputting figure to mutsig2_images.part000000000012/ASPH.2_3113_30000_0.050667_0.53803_0.1043.png
                gene_name: ASPH
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 87 percent done.
ASPHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
KS ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
ASPHD2   10000 perm   2 sec   (6604 perm/sec)   p_kst 3.113000e-01   p_cons 2.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASPHD2.2_1122_10000_0.3113_0.2055_1.png
                gene_name: ASPHD2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ASPRV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
Cons ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
KS ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
ASPRV1   10000 perm   2 sec   (6646 perm/sec)   p_kst 1.069000e-01   p_cons 9.200000e-01   p_joint 2.517000e-01

Joint ci ratio: 1.653029e-02	ci left: 7.314940e-01	ci right 7.437369e-01	k: 14753	n:20000
Cons ci ratio: 7.503908e-03	ci left: 9.281669e-01	ci right 9.352069e-01	k: 18635	n:20000
KS ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
ASPRV1   20000 perm   3 sec   (5798 perm/sec)   p_kst 1.081500e-01   p_cons 9.317500e-01   p_joint 7.376500e-01

Outputting figure to mutsig2_images.part000000000012/ASPRV1.2_1036_20000_0.10815_0.93175_0.73765.png
                gene_name: ASPRV1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 90 percent done.
ATAD3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
Cons ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
KS ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
ATAD3A   10000 perm   2 sec   (6238 perm/sec)   p_kst 4.698000e-01   p_cons 3.113000e-01   p_joint 5.556000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD3A.2_1969_10000_0.4698_0.3113_0.5556.png
                gene_name: ATAD3A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 92 percent done.
ATG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167756e-02	ci left: 5.952389e-01	ci right 6.145000e-01	k: 6049	n:10000
Cons ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
ATG10   10000 perm   1 sec   (6838 perm/sec)   p_kst 2.754000e-01   p_cons 9.376000e-01   p_joint 6.049000e-01

Outputting figure to mutsig2_images.part000000000012/ATG10.2_687_10000_0.2754_0.9376_0.6049.png
                gene_name: ATG10
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 94 percent done.
ATG16L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
Cons ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
ATG16L1   10000 perm   2 sec   (6265 perm/sec)   p_kst 5.276000e-01   p_cons 7.488000e-01   p_joint 7.539000e-01

Outputting figure to mutsig2_images.part000000000012/ATG16L1.2_1896_10000_0.5276_0.7488_0.7539.png
                gene_name: ATG16L1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 96 percent done.
ATG16L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
Cons ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
KS ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
ATG16L2   10000 perm   2 sec   (6318 perm/sec)   p_kst 6.939000e-01   p_cons 1.202000e-01   p_joint 3.766000e-01

Joint ci ratio: 5.711039e-02	ci left: 1.851768e-01	ci right 1.961133e-01	k: 3812	n:20000
Cons ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
KS ci ratio: 1.826878e-02	ci left: 6.907286e-01	ci right 7.035141e-01	k: 13943	n:20000
ATG16L2   20000 perm   4 sec   (5528 perm/sec)   p_kst 6.971500e-01   p_cons 1.288000e-01   p_joint 1.906000e-01

Outputting figure to mutsig2_images.part000000000012/ATG16L2.2_1932_20000_0.69715_0.1288_0.1906.png
                gene_name: ATG16L2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 98 percent done.
ATG4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.144844e-02	ci left: 7.612190e-01	ci right 7.778238e-01	k: 7696	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
ATG4A   10000 perm   2 sec   (6478 perm/sec)   p_kst 5.902000e-01   p_cons 5.610000e-02   p_joint 7.696000e-01

Joint ci ratio: 2.816353e-02	ci left: 4.850480e-01	ci right 4.989544e-01	k: 9840	n:20000
Cons ci ratio: 1.365022e-01	ci left: 3.689100e-02	ci right 4.234388e-02	k: 791	n:20000
KS ci ratio: 2.314357e-02	ci left: 5.823441e-01	ci right 5.960300e-01	k: 11784	n:20000
ATG4A   20000 perm   4 sec   (5664 perm/sec)   p_kst 5.892000e-01   p_cons 3.955000e-02   p_joint 4.920000e-01

Joint ci ratio: 3.181321e-02	ci left: 3.306545e-01	ci right 3.413773e-01	k: 10080	n:30000
Cons ci ratio: 1.098750e-01	ci left: 3.845951e-02	ci right 4.296332e-02	k: 1220	n:30000
KS ci ratio: 1.877625e-02	ci left: 5.867139e-01	ci right 5.978682e-01	k: 17769	n:30000
ATG4A   30000 perm   6 sec   (5359 perm/sec)   p_kst 5.923000e-01   p_cons 4.066667e-02   p_joint 3.360000e-01

Joint ci ratio: 2.963397e-02	ci left: 2.997928e-01	ci right 3.088356e-01	k: 12172	n:40000
Cons ci ratio: 9.479130e-02	ci left: 3.905325e-02	ci right 4.296375e-02	k: 1639	n:40000
KS ci ratio: 1.617263e-02	ci left: 5.900950e-01	ci right 5.997413e-01	k: 23797	n:40000
ATG4A   40000 perm   8 sec   (5171 perm/sec)   p_kst 5.949250e-01   p_cons 4.097500e-02   p_joint 3.043000e-01

Outputting figure to mutsig2_images.part000000000012/ATG4A.2_1249_40000_0.59493_0.040975_0.3043.png
                gene_name: ATG4A
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000012
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 12 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 4421722: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000013> was used as the working directory.
Started at Wed Oct 24 17:30:36 2012
Results reported at Wed Oct 24 17:39:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000013.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000013.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 13  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000013.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    571.81 sec.
    Max Memory :      5211 MB
    Max Swap   :      7966 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
13
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 13
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 13: processing genes 1087 - 1176
Calculating significance of each gene.
Using projection method.
1087	ATG4C	1
1088	ATG4D	1
1089	ATG5	1
1090	ATG7	1
1091	ATG9A	9.736297e-01
1092	ATG9B	9.672680e-01
1093	ATHL1	1
1094	ATIC	6.186573e-01
1095	ATL1	3.403164e-01
1096	ATL2	4.205603e-01
1097	ATL3	9.627422e-01
1098	ATM	6.054953e-01
1099	ATMIN	8.080897e-01
1100	ATN1	9.762259e-01
1101	ATOH1	8.541353e-01
1102	ATOH7	1
1103	ATOH8	4.425495e-01
1104	ATOX1	1
1105	ATP10A	8.714556e-01
1106	ATP10B	9.934211e-01
1107	ATP10D	3.900176e-01
1108	ATP11A	9.985681e-01
1109	ATP11B	9.807708e-01
1110	ATP11C	2.891979e-01
1111	ATP12A	9.986654e-01
1112	ATP13A1	9.800777e-01
1113	ATP13A2	9.232236e-01
1114	ATP13A3	9.612247e-01
1115	ATP13A4	8.700430e-01
1116	ATP13A5	3.452862e-01
1117	ATP1A1	9.983024e-01
1118	ATP1A2	9.950093e-01
1119	ATP1A3	9.862806e-01
1120	ATP1A4	9.882213e-01
1121	ATP1B1	1
1122	ATP1B2	1
1123	ATP1B3	7.089281e-01
1124	ATP1B4	4.367476e-02
1125	ATP2A1	9.934270e-01
1126	ATP2A2	9.534471e-01
1127	ATP2A3	9.753674e-01
1128	ATP2B1	7.080746e-01
1129	ATP2B2	1
1130	ATP2B3	9.897567e-01
1131	ATP2B4	9.235773e-01
1132	ATP2C1	7.199252e-01
1133	ATP2C2	9.608193e-01
1134	ATP4A	9.751267e-01
1135	ATP4B	6.613384e-01
1136	ATP5A1	9.254849e-01
1137	ATP5B	9.048002e-01
1138	ATP5C1	3.820792e-01
1139	ATP5D	1
1140	ATP5E	1
1141	ATP5F1	4.385513e-01
1142	ATP5G1	1
1143	ATP5G2	1
1144	ATP5G3	1.347313e-01
1145	ATP5H	1
1146	ATP5I	1
1147	ATP5J	1
1148	ATP5J2	1
1149	ATP5L	6.964176e-02
1150	ATP5L2	1
1151	ATP5O	1
1152	ATP5S	1
1153	ATP5SL	4.089709e-01
1154	ATP6AP1	1
1155	ATP6AP1L	5.642295e-01
1156	ATP6AP2	5.074373e-01
1157	ATP6V0A1	9.481481e-01
1158	ATP6V0A2	1
1159	ATP6V0A4	7.505772e-01
1160	ATP6V0B	5.429476e-01
1161	ATP6V0C	1
1162	ATP6V0D1	7.245453e-01
1163	ATP6V0D2	2.606747e-01
1164	ATP6V0E1	1
1165	ATP6V0E2	1
1166	ATP6V1A	7.992306e-01
1167	ATP6V1B1	3.808502e-01
1168	ATP6V1B2	7.003343e-01
1169	ATP6V1C1	4.198603e-01
1170	ATP6V1C2	1
1171	ATP6V1D	5.763049e-01
1172	ATP6V1E1	1
1173	ATP6V1E2	1
1174	ATP6V1F	3.183464e-01
1175	ATP6V1G1	4.244990e-01
1176	ATP6V1G2	1
Done

Running MutSig 2:
Scatter job 13: processing genes 1087 - 1176
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
Cons ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
KS ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
ATM   10000 perm   3 sec   (2946 perm/sec)   p_kst 5.989000e-01   p_cons 3.980000e-02   p_joint 1.454000e-01

Joint ci ratio: 5.680686e-02	ci left: 1.868086e-01	ci right 1.977810e-01	k: 3845	n:20000
Cons ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
KS ci ratio: 2.323691e-02	ci left: 5.803895e-01	ci right 5.940851e-01	k: 11745	n:20000
ATM   20000 perm   9 sec   (2175 perm/sec)   p_kst 5.872500e-01   p_cons 3.990000e-02   p_joint 1.922500e-01

Joint ci ratio: 4.752329e-02	ci left: 1.804550e-01	ci right 1.892728e-01	k: 5545	n:30000
Cons ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
KS ci ratio: 1.879569e-02	ci left: 5.862129e-01	ci right 5.973693e-01	k: 17754	n:30000
ATM   30000 perm   13 sec   (2311 perm/sec)   p_kst 5.918000e-01   p_cons 4.050000e-02   p_joint 1.848333e-01

Joint ci ratio: 5.119719e-02	ci left: 1.245428e-01	ci right 1.311114e-01	k: 5112	n:40000
Cons ci ratio: 9.620696e-02	ci left: 3.792964e-02	ci right 4.178753e-02	k: 1593	n:40000
KS ci ratio: 1.594130e-02	ci left: 5.970331e-01	ci right 6.066521e-01	k: 24074	n:40000
ATM   40000 perm   17 sec   (2379 perm/sec)   p_kst 6.018500e-01   p_cons 3.982500e-02   p_joint 1.278000e-01

Outputting figure to mutsig2_images.part000000000013/ATM.22_9419_40000_0.60185_0.039825_0.1278.png
                gene_name: ATM
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
ATP10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
Cons ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
KS ci ratio: 8.892412e-02	ci left: 1.554168e-01	ci right 1.699803e-01	k: 1626	n:10000
ATP10B   10000 perm   2 sec   (4118 perm/sec)   p_kst 1.626000e-01   p_cons 2.733000e-01   p_joint 2.541000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10B.17_4474_10000_0.1626_0.2733_0.2541.png
                gene_name: ATP10B
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
ATP1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
ATP1A4   10000 perm   2 sec   (4845 perm/sec)   p_kst 8.413000e-01   p_cons 9.502000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP1A4.15_3178_10000_0.8413_0.9502_1.png
                gene_name: ATP1A4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
ATP11C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
Cons ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
KS ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
ATP11C   10000 perm   2 sec   (4452 perm/sec)   p_kst 3.939000e-01   p_cons 2.097000e-01   p_joint 3.822000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11C.13_3582_10000_0.3939_0.2097_0.3822.png
                gene_name: ATP11C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 8 percent done.
ATP10D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
Cons ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
ATP10D   10000 perm   2 sec   (4278 perm/sec)   p_kst 4.360000e-02   p_cons 4.181000e-01   p_joint 1.064000e-01

Joint ci ratio: 7.812633e-02	ci left: 1.074153e-01	ci right 1.161980e-01	k: 2235	n:20000
Cons ci ratio: 3.342378e-02	ci left: 4.006291e-01	ci right 4.142978e-01	k: 8149	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
ATP10D   20000 perm   5 sec   (3936 perm/sec)   p_kst 4.185000e-02   p_cons 4.074500e-01   p_joint 1.117500e-01

Joint ci ratio: 7.547369e-02	ci left: 7.937784e-02	ci right 8.563663e-02	k: 2474	n:30000
Cons ci ratio: 2.727149e-02	ci left: 4.022316e-01	ci right 4.133863e-01	k: 12234	n:30000
KS ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
ATP10D   30000 perm   8 sec   (3800 perm/sec)   p_kst 4.303333e-02   p_cons 4.078000e-01   p_joint 8.246667e-02

Joint ci ratio: 5.572940e-02	ci left: 1.069990e-01	ci right 1.131577e-01	k: 4402	n:40000
Cons ci ratio: 2.366714e-02	ci left: 4.019804e-01	ci right 4.116332e-01	k: 16272	n:40000
KS ci ratio: 9.294503e-02	ci left: 4.059277e-02	ci right 4.457398e-02	k: 1702	n:40000
ATP10D   40000 perm   11 sec   (3704 perm/sec)   p_kst 4.255000e-02   p_cons 4.068000e-01   p_joint 1.100500e-01

Outputting figure to mutsig2_images.part000000000013/ATP10D.12_4369_40000_0.04255_0.4068_0.11005.png
                gene_name: ATP10D
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 10 percent done.
ATP13A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
ATP13A5   10000 perm   2 sec   (4481 perm/sec)   p_kst 2.480000e-01   p_cons 2.171000e-01   p_joint 3.471000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A5.12_3775_10000_0.248_0.2171_0.3471.png
                gene_name: ATP13A5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 12 percent done.
ATP2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
Cons ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
ATP2B2   10000 perm   2 sec   (4904 perm/sec)   p_kst 4.847000e-01   p_cons 1.894000e-01   p_joint 2.988000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B2.11_3820_10000_0.4847_0.1894_0.2988.png
                gene_name: ATP2B2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 13 percent done.
ATP2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
KS ci ratio: 1.888769e-02	ci left: 8.037956e-01	ci right 8.192225e-01	k: 8116	n:10000
ATP2B3   10000 perm   2 sec   (4543 perm/sec)   p_kst 8.116000e-01   p_cons 8.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP2B3.11_3901_10000_0.8116_0.8572_1.png
                gene_name: ATP2B3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ATP13A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
Cons ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
KS ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
ATP13A4   10000 perm   2 sec   (4339 perm/sec)   p_kst 1.092000e-01   p_cons 2.444000e-01   p_joint 1.569000e-01

Joint ci ratio: 6.105161e-02	ci left: 1.656569e-01	ci right 1.761390e-01	k: 3417	n:20000
Cons ci ratio: 4.913658e-02	ci left: 2.354326e-01	ci right 2.473427e-01	k: 4827	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
ATP13A4   20000 perm   5 sec   (3995 perm/sec)   p_kst 1.066500e-01   p_cons 2.413500e-01   p_joint 1.708500e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A4.10_3711_20000_0.10665_0.24135_0.17085.png
                gene_name: ATP13A4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 17 percent done.
ATP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
Cons ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
KS ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
ATP2B1   10000 perm   2 sec   (4338 perm/sec)   p_kst 7.089000e-01   p_cons 4.818000e-01   p_joint 7.913000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B1.9_3901_10000_0.7089_0.4818_0.7913.png
                gene_name: ATP2B1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 19 percent done.
ATP2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
Cons ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
KS ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
ATP2B4   10000 perm   2 sec   (4703 perm/sec)   p_kst 6.903000e-01   p_cons 1.370000e-02   p_joint 1.761000e-01

Joint ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
Cons ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
KS ci ratio: 1.873730e-02	ci left: 6.798680e-01	ci right 6.927778e-01	k: 13727	n:20000
ATP2B4   20000 perm   5 sec   (4292 perm/sec)   p_kst 6.863500e-01   p_cons 1.325000e-02   p_joint 6.520000e-02

Joint ci ratio: 9.032902e-02	ci left: 5.639247e-02	ci right 6.175999e-02	k: 1771	n:30000
Cons ci ratio: 1.984924e-01	ci left: 1.155866e-02	ci right 1.413697e-02	k: 384	n:30000
KS ci ratio: 1.499959e-02	ci left: 6.895538e-01	ci right 7.000085e-01	k: 20844	n:30000
ATP2B4   30000 perm   7 sec   (4137 perm/sec)   p_kst 6.948000e-01   p_cons 1.280000e-02   p_joint 5.903333e-02

Joint ci ratio: 8.345366e-02	ci left: 5.008930e-02	ci right 5.447598e-02	k: 2090	n:40000
Cons ci ratio: 1.752745e-01	ci left: 1.126678e-02	ci right 1.345486e-02	k: 493	n:40000
KS ci ratio: 1.297478e-02	ci left: 6.907628e-01	ci right 6.998089e-01	k: 27812	n:40000
ATP2B4   40000 perm   10 sec   (4028 perm/sec)   p_kst 6.953000e-01   p_cons 1.232500e-02   p_joint 5.225000e-02

Joint ci ratio: 7.565275e-02	ci left: 4.902886e-02	ci right 5.290349e-02	k: 2547	n:50000
Cons ci ratio: 1.572225e-01	ci left: 1.131384e-02	ci right 1.326340e-02	k: 613	n:50000
KS ci ratio: 1.158969e-02	ci left: 6.918063e-01	ci right 6.998909e-01	k: 34793	n:50000
ATP2B4   50000 perm   13 sec   (3933 perm/sec)   p_kst 6.958600e-01   p_cons 1.226000e-02   p_joint 5.094000e-02

Joint ci ratio: 6.658074e-02	ci left: 5.279532e-02	ci right 5.644791e-02	k: 3276	n:60000
Cons ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
KS ci ratio: 1.060141e-02	ci left: 6.912983e-01	ci right 6.986828e-01	k: 41700	n:60000
ATP2B4   60000 perm   16 sec   (3859 perm/sec)   p_kst 6.950000e-01   p_cons 1.243333e-02   p_joint 5.460000e-02

Joint ci ratio: 6.551330e-02	ci left: 4.706085e-02	ci right 5.026241e-02	k: 3405	n:70000
Cons ci ratio: 1.321480e-01	ci left: 1.159333e-02	ci right 1.324745e-02	k: 868	n:70000
KS ci ratio: 9.846445e-03	ci left: 6.902128e-01	ci right 6.970568e-01	k: 48555	n:70000
ATP2B4   70000 perm   18 sec   (3794 perm/sec)   p_kst 6.936429e-01   p_cons 1.240000e-02   p_joint 4.864286e-02

Joint ci ratio: 5.717329e-02	ci left: 5.391102e-02	ci right 5.709631e-02	k: 4439	n:80000
Cons ci ratio: 1.234336e-01	ci left: 1.168099e-02	ci right 1.322967e-02	k: 995	n:80000
KS ci ratio: 9.206568e-03	ci left: 6.906179e-01	ci right 6.970180e-01	k: 55506	n:80000
ATP2B4   80000 perm   21 sec   (3732 perm/sec)   p_kst 6.938250e-01   p_cons 1.243750e-02   p_joint 5.548750e-02

Joint ci ratio: 5.251516e-02	ci left: 5.676693e-02	ci right 5.983940e-02	k: 5246	n:90000
Cons ci ratio: 1.157225e-01	ci left: 1.185988e-02	ci right 1.332734e-02	k: 1132	n:90000
KS ci ratio: 8.672382e-03	ci left: 6.911781e-01	ci right 6.972094e-01	k: 62478	n:90000
ATP2B4   90000 perm   24 sec   (3677 perm/sec)   p_kst 6.942000e-01   p_cons 1.257778e-02   p_joint 5.828889e-02

Joint ci ratio: 4.942981e-02	ci left: 5.770556e-02	ci right 6.064008e-02	k: 5916	n:100000
Cons ci ratio: 1.094276e-01	ci left: 1.197622e-02	ci right 1.337226e-02	k: 1266	n:100000
KS ci ratio: 8.228706e-03	ci left: 6.912635e-01	ci right 6.969852e-01	k: 69413	n:100000
ATP2B4   100000 perm   28 sec   (3619 perm/sec)   p_kst 6.941300e-01   p_cons 1.266000e-02   p_joint 5.916000e-02

Joint ci ratio: 5.082217e-02	ci left: 5.000361e-02	ci right 5.262011e-02	k: 5643	n:110000
Cons ci ratio: 1.041348e-01	ci left: 1.205546e-02	ci right 1.338860e-02	k: 1398	n:110000
KS ci ratio: 7.848674e-03	ci left: 6.912397e-01	ci right 6.966955e-01	k: 76337	n:110000
ATP2B4   110000 perm   31 sec   (3566 perm/sec)   p_kst 6.939727e-01   p_cons 1.270909e-02   p_joint 5.130000e-02

Joint ci ratio: 4.954308e-02	ci left: 4.835359e-02	ci right 5.081824e-02	k: 5949	n:120000
Cons ci ratio: 9.947668e-02	ci left: 1.213910e-02	ci right 1.341794e-02	k: 1532	n:120000
KS ci ratio: 7.518624e-03	ci left: 6.911249e-01	ci right 6.963491e-01	k: 83249	n:120000
ATP2B4   120000 perm   34 sec   (3514 perm/sec)   p_kst 6.937417e-01   p_cons 1.276667e-02   p_joint 4.957500e-02

Outputting figure to mutsig2_images.part000000000013/ATP2B4.9_3880_120000_0.69374_0.012767_0.049575.png
                gene_name: ATP2B4
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 21 percent done.
ATP10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.009309e-02	ci left: 2.894418e-01	ci right 3.074757e-01	k: 2984	n:10000
Cons ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
KS ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
ATP10A   10000 perm   2 sec   (4672 perm/sec)   p_kst 1.720000e-01   p_cons 3.432000e-01   p_joint 2.984000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10A.8_4584_10000_0.172_0.3432_0.2984.png
                gene_name: ATP10A
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 23 percent done.
ATP1B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
Cons ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
KS ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
ATP1B4   10000 perm   2 sec   (5278 perm/sec)   p_kst 7.613000e-01   p_cons 7.826000e-01   p_joint 8.348000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1B4.8_1106_10000_0.7613_0.7826_0.8348.png
                gene_name: ATP1B4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 25 percent done.
ATP12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
Cons ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
KS ci ratio: 7.894895e-03	ci left: 9.571236e-01	ci right 9.648049e-01	k: 9611	n:10000
ATP12A   10000 perm   2 sec   (4886 perm/sec)   p_kst 9.611000e-01   p_cons 9.280000e-02   p_joint 2.994000e-01

Joint ci ratio: 3.090587e-02	ci left: 4.388447e-01	ci right 4.526711e-01	k: 8915	n:20000
Cons ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
KS ci ratio: 5.443974e-03	ci left: 9.601874e-01	ci right 9.654770e-01	k: 19258	n:20000
ATP12A   20000 perm   4 sec   (4466 perm/sec)   p_kst 9.629000e-01   p_cons 1.009500e-01   p_joint 4.457500e-01

Outputting figure to mutsig2_images.part000000000013/ATP12A.7_3230_20000_0.9629_0.10095_0.44575.png
                gene_name: ATP12A
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 27 percent done.
ATP1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.235680e-02	ci left: 1.770385e-01	ci right 1.923456e-01	k: 1846	n:10000
Cons ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
KS ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
ATP1A1   10000 perm   2 sec   (5169 perm/sec)   p_kst 1.584000e-01   p_cons 2.437000e-01   p_joint 1.846000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A1.7_3180_10000_0.1584_0.2437_0.1846.png
                gene_name: ATP1A1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 29 percent done.
ATP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
Cons ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
KS ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
ATP4A   10000 perm   2 sec   (4880 perm/sec)   p_kst 5.945000e-01   p_cons 7.702000e-01   p_joint 7.580000e-01

Outputting figure to mutsig2_images.part000000000013/ATP4A.7_3196_10000_0.5945_0.7702_0.758.png
                gene_name: ATP4A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 31 percent done.
ATP1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
Cons ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
KS ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
ATP1A2   10000 perm   2 sec   (5003 perm/sec)   p_kst 7.025000e-01   p_cons 8.150000e-02   p_joint 2.666000e-01

Joint ci ratio: 4.816372e-02	ci left: 2.427708e-01	ci right 2.548024e-01	k: 4975	n:20000
Cons ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
KS ci ratio: 1.808728e-02	ci left: 6.949532e-01	ci right 7.076882e-01	k: 14027	n:20000
ATP1A2   20000 perm   4 sec   (4518 perm/sec)   p_kst 7.013500e-01   p_cons 8.535000e-02   p_joint 2.487500e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A2.6_3155_20000_0.70135_0.08535_0.24875.png
                gene_name: ATP1A2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 33 percent done.
ATP1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
ATP1A3   10000 perm   2 sec   (5059 perm/sec)   p_kst 4.924000e-01   p_cons 7.455000e-01   p_joint 6.068000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A3.6_3134_10000_0.4924_0.7455_0.6068.png
                gene_name: ATP1A3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 35 percent done.
ATP2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.592340e-02	ci left: 8.514124e-01	ci right 8.651781e-01	k: 8584	n:10000
Cons ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
KS ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
ATP2A2   10000 perm   2 sec   (5092 perm/sec)   p_kst 6.342000e-01   p_cons 7.035000e-01   p_joint 8.584000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A2.6_3227_10000_0.6342_0.7035_0.8584.png
                gene_name: ATP2A2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 37 percent done.
ATP2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
ATP2C2   10000 perm   2 sec   (5055 perm/sec)   p_kst 8.080000e-02   p_cons 2.419000e-01   p_joint 1.142000e-01

Joint ci ratio: 8.199738e-02	ci left: 9.832948e-02	ci right 1.067865e-01	k: 2050	n:20000
Cons ci ratio: 4.670174e-02	ci left: 2.543777e-01	ci right 2.665920e-01	k: 5209	n:20000
KS ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
ATP2C2   20000 perm   4 sec   (4598 perm/sec)   p_kst 8.115000e-02   p_cons 2.604500e-01   p_joint 1.025000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2C2.6_2949_20000_0.08115_0.26045_0.1025.png
                gene_name: ATP2C2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 38 percent done.
ATP6V0A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
ATP6V0A4   10000 perm   2 sec   (5102 perm/sec)   p_kst 6.284000e-01   p_cons 7.950000e-01   p_joint 8.742000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0A4.6_2603_10000_0.6284_0.795_0.8742.png
                gene_name: ATP6V0A4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 40 percent done.
ATP11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 1.215078e-02	ci left: 9.066881e-01	ci right 9.178704e-01	k: 9124	n:10000
ATP11B   10000 perm   2 sec   (4805 perm/sec)   p_kst 9.124000e-01   p_cons 2.886000e-01   p_joint 6.386000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11B.5_3654_10000_0.9124_0.2886_0.6386.png
                gene_name: ATP11B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 42 percent done.
ATP13A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
Cons ci ratio: 1.423778e-02	ci left: 8.770500e-01	ci right 8.897257e-01	k: 8835	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
ATP13A2   10000 perm   2 sec   (5271 perm/sec)   p_kst 4.949000e-01   p_cons 8.835000e-01   p_joint 6.135000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A2.5_3895_10000_0.4949_0.8835_0.6135.png
                gene_name: ATP13A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 44 percent done.
ATP2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
Cons ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
KS ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
ATP2C1   10000 perm   2 sec   (5358 perm/sec)   p_kst 4.482000e-01   p_cons 4.145000e-01   p_joint 5.374000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2C1.5_2968_10000_0.4482_0.4145_0.5374.png
                gene_name: ATP2C1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 46 percent done.
ATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
Cons ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
KS ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
ATL1   10000 perm   2 sec   (6184 perm/sec)   p_kst 5.570000e-02   p_cons 9.830000e-02   p_joint 6.320000e-02

Joint ci ratio: 1.041021e-01	ci left: 6.274367e-02	ci right 6.968309e-02	k: 1323	n:20000
Cons ci ratio: 8.474023e-02	ci left: 9.253972e-02	ci right 1.007780e-01	k: 1932	n:20000
KS ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
ATL1   20000 perm   4 sec   (5525 perm/sec)   p_kst 5.330000e-02   p_cons 9.660000e-02   p_joint 6.615000e-02

Joint ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
Cons ci ratio: 6.992033e-02	ci left: 9.150783e-02	ci right 9.817087e-02	k: 2844	n:30000
KS ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
ATL1   30000 perm   6 sec   (5258 perm/sec)   p_kst 5.330000e-02   p_cons 9.480000e-02   p_joint 4.546667e-02

Joint ci ratio: 9.037033e-02	ci left: 4.289121e-02	ci right 4.697518e-02	k: 1796	n:40000
Cons ci ratio: 6.019716e-02	ci left: 9.295732e-02	ci right 9.875150e-02	k: 3833	n:40000
KS ci ratio: 8.136045e-02	ci left: 5.261406e-02	ci right 5.710083e-02	k: 2193	n:40000
ATL1   40000 perm   8 sec   (5086 perm/sec)   p_kst 5.482500e-02   p_cons 9.582500e-02   p_joint 4.490000e-02

Outputting figure to mutsig2_images.part000000000013/ATL1.4_1733_40000_0.054825_0.095825_0.0449.png
                gene_name: ATL1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 48 percent done.
ATL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
KS ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
ATL2   10000 perm   2 sec   (6491 perm/sec)   p_kst 1.352000e-01   p_cons 3.358000e-01   p_joint 1.585000e-01

Outputting figure to mutsig2_images.part000000000013/ATL2.4_1916_10000_0.1352_0.3358_0.1585.png
                gene_name: ATL2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 50 percent done.
ATMIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
ATMIN   10000 perm   2 sec   (5465 perm/sec)   p_kst 6.322000e-01   p_cons 4.040000e-02   p_joint 1.092000e-01

Joint ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
Cons ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
KS ci ratio: 2.126181e-02	ci left: 6.228137e-01	ci right 6.362486e-01	k: 12591	n:20000
ATMIN   20000 perm   4 sec   (4918 perm/sec)   p_kst 6.295500e-01   p_cons 4.110000e-02   p_joint 1.101500e-01

Joint ci ratio: 5.916812e-02	ci left: 1.238441e-01	ci right 1.314282e-01	k: 3828	n:30000
Cons ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
KS ci ratio: 1.790116e-02	ci left: 6.095998e-01	ci right 6.206445e-01	k: 18454	n:30000
ATMIN   30000 perm   6 sec   (4704 perm/sec)   p_kst 6.151333e-01   p_cons 4.133333e-02   p_joint 1.276000e-01

Joint ci ratio: 4.302616e-02	ci left: 1.681396e-01	ci right 1.755581e-01	k: 6873	n:40000
Cons ci ratio: 9.509402e-02	ci left: 3.880895e-02	ci right 4.270808e-02	k: 1629	n:40000
KS ci ratio: 1.554504e-02	ci left: 6.090582e-01	ci right 6.186253e-01	k: 24554	n:40000
ATMIN   40000 perm   9 sec   (4560 perm/sec)   p_kst 6.138500e-01   p_cons 4.072500e-02   p_joint 1.718250e-01

Outputting figure to mutsig2_images.part000000000013/ATMIN.4_2488_40000_0.61385_0.040725_0.17183.png
                gene_name: ATMIN
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 52 percent done.
ATN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
KS ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
ATN1   10000 perm   2 sec   (5060 perm/sec)   p_kst 9.297000e-01   p_cons 6.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATN1.4_3609_10000_0.9297_0.6795_1.png
                gene_name: ATN1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
ATP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
Cons ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
KS ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
ATP11A   10000 perm   2 sec   (5057 perm/sec)   p_kst 5.789000e-01   p_cons 6.100000e-02   p_joint 3.619000e-01

Joint ci ratio: 4.810581e-02	ci left: 2.432171e-01	ci right 2.552559e-01	k: 4984	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 2.393641e-02	ci left: 5.659092e-01	ci right 5.796697e-01	k: 11456	n:20000
ATP11A   20000 perm   4 sec   (4571 perm/sec)   p_kst 5.728000e-01   p_cons 5.655000e-02   p_joint 2.492000e-01

Joint ci ratio: 4.554874e-02	ci left: 1.934704e-01	ci right 2.025215e-01	k: 5939	n:30000
Cons ci ratio: 9.280342e-02	ci left: 5.352247e-02	ci right 5.876390e-02	k: 1683	n:30000
KS ci ratio: 1.954572e-02	ci left: 5.671455e-01	ci right 5.783738e-01	k: 17183	n:30000
ATP11A   30000 perm   7 sec   (4399 perm/sec)   p_kst 5.727667e-01   p_cons 5.610000e-02   p_joint 1.979667e-01

Outputting figure to mutsig2_images.part000000000013/ATP11A.4_3774_30000_0.57277_0.0561_0.19797.png
                gene_name: ATP11A
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
ATP13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
Cons ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
ATP13A1   10000 perm   2 sec   (5027 perm/sec)   p_kst 1.074000e-01   p_cons 6.257000e-01   p_joint 2.803000e-01

Joint ci ratio: 5.098270e-02	ci left: 2.222995e-01	ci right 2.339796e-01	k: 4562	n:20000
Cons ci ratio: 2.140105e-02	ci left: 6.197529e-01	ci right 6.332103e-01	k: 12530	n:20000
KS ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
ATP13A1   20000 perm   4 sec   (4556 perm/sec)   p_kst 1.096500e-01   p_cons 6.265000e-01   p_joint 2.281000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A1.4_3719_20000_0.10965_0.6265_0.2281.png
                gene_name: ATP13A1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 58 percent done.
ATP2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
ATP2A3   10000 perm   2 sec   (5500 perm/sec)   p_kst 2.251000e-01   p_cons 3.037000e-01   p_joint 2.703000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A3.4_3295_10000_0.2251_0.3037_0.2703.png
                gene_name: ATP2A3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 60 percent done.
ATP6V0D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.004086e-02	ci left: 9.336122e-01	ci right 9.431305e-01	k: 9385	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
ATP6V0D2   10000 perm   2 sec   (6021 perm/sec)   p_kst 7.616000e-01   p_cons 9.385000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V0D2.4_1085_10000_0.7616_0.9385_1.png
                gene_name: ATP6V0D2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ATP6V1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.880121e-02	ci left: 8.052171e-01	ci right 8.206001e-01	k: 8130	n:10000
KS ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
ATP6V1A   10000 perm   2 sec   (6047 perm/sec)   p_kst 8.851000e-01   p_cons 8.130000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1A.4_1910_10000_0.8851_0.813_1.png
                gene_name: ATP6V1A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ATP6V1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 7.946732e-02	ci left: 1.878651e-01	ci right 2.035126e-01	k: 1956	n:10000
ATP6V1B1   10000 perm   2 sec   (5911 perm/sec)   p_kst 1.956000e-01   p_cons 1.749000e-01   p_joint 1.385000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1B1.4_1598_10000_0.1956_0.1749_0.1385.png
                gene_name: ATP6V1B1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 65 percent done.
ATP6V1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
Cons ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
ATP6V1C1   10000 perm   2 sec   (6019 perm/sec)   p_kst 3.429000e-01   p_cons 9.900000e-02   p_joint 2.797000e-01

Joint ci ratio: 4.475906e-02	ci left: 2.709546e-01	ci right 2.834103e-01	k: 5543	n:20000
Cons ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
KS ci ratio: 3.837104e-02	ci left: 3.362699e-01	ci right 3.494758e-01	k: 6857	n:20000
ATP6V1C1   20000 perm   4 sec   (5421 perm/sec)   p_kst 3.428500e-01   p_cons 9.535000e-02   p_joint 2.771500e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1C1.4_1197_20000_0.34285_0.09535_0.27715.png
                gene_name: ATP6V1C1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 67 percent done.
ATIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
ATIC   10000 perm   2 sec   (6123 perm/sec)   p_kst 5.831000e-01   p_cons 2.606000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATIC.3_1843_10000_0.5831_0.2606_1.png
                gene_name: ATIC
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
ATP13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
Cons ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KS ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
ATP13A3   10000 perm   2 sec   (5264 perm/sec)   p_kst 3.934000e-01   p_cons 4.103000e-01   p_joint 6.294000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A3.3_3805_10000_0.3934_0.4103_0.6294.png
                gene_name: ATP13A3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 71 percent done.
ATP2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
Cons ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
KS ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
ATP2A1   10000 perm   2 sec   (5397 perm/sec)   p_kst 3.900000e-02   p_cons 9.162000e-01   p_joint 1.238000e-01

Joint ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
Cons ci ratio: 8.321697e-03	ci left: 9.134479e-01	ci right 9.211303e-01	k: 18347	n:20000
KS ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
ATP2A1   20000 perm   4 sec   (4862 perm/sec)   p_kst 3.725000e-02   p_cons 9.173500e-01   p_joint 6.055000e-02

Joint ci ratio: 1.091317e-01	ci left: 3.897881e-02	ci right 4.351058e-02	k: 1236	n:30000
Cons ci ratio: 6.759038e-03	ci left: 9.149736e-01	ci right 9.212118e-01	k: 27544	n:30000
KS ci ratio: 1.208175e-01	ci left: 3.184836e-02	ci right 3.597588e-02	k: 1016	n:30000
ATP2A1   30000 perm   6 sec   (4657 perm/sec)   p_kst 3.386667e-02   p_cons 9.181333e-01   p_joint 4.120000e-02

Joint ci ratio: 9.125109e-02	ci left: 4.208413e-02	ci right 4.613239e-02	k: 1763	n:40000
Cons ci ratio: 5.888587e-03	ci left: 9.144818e-01	ci right 9.199074e-01	k: 36689	n:40000
KS ci ratio: 1.049926e-01	ci left: 3.190425e-02	ci right 3.546386e-02	k: 1346	n:40000
ATP2A1   40000 perm   9 sec   (4526 perm/sec)   p_kst 3.365000e-02   p_cons 9.172250e-01   p_joint 4.407500e-02

Joint ci ratio: 8.119481e-02	ci left: 4.272868e-02	ci right 4.636443e-02	k: 2226	n:50000
Cons ci ratio: 5.265593e-03	ci left: 9.148110e-01	ci right 9.196604e-01	k: 45863	n:50000
KS ci ratio: 9.372861e-02	ci left: 3.221357e-02	ci right 3.540086e-02	k: 1689	n:50000
ATP2A1   50000 perm   11 sec   (4419 perm/sec)   p_kst 3.378000e-02   p_cons 9.172600e-01   p_joint 4.452000e-02

Outputting figure to mutsig2_images.part000000000013/ATP2A1.3_3103_50000_0.03378_0.91726_0.04452.png
                gene_name: ATP2A1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 73 percent done.
ATP5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
Cons ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
KS ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
ATP5A1   10000 perm   2 sec   (6143 perm/sec)   p_kst 2.387000e-01   p_cons 6.065000e-01   p_joint 2.504000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5A1.3_1710_10000_0.2387_0.6065_0.2504.png
                gene_name: ATP5A1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 75 percent done.
ATG9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
KS ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
ATG9A   10000 perm   2 sec   (6123 perm/sec)   p_kst 7.965000e-01   p_cons 2.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATG9A.2_2576_10000_0.7965_0.2934_1.png
                gene_name: ATG9A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ATOH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
ATOH8   10000 perm   1 sec   (6710 perm/sec)   p_kst 5.532000e-01   p_cons 1.531000e-01   p_joint 9.349000e-01

Outputting figure to mutsig2_images.part000000000013/ATOH8.2_978_10000_0.5532_0.1531_0.9349.png
                gene_name: ATOH8
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 79 percent done.
ATP5C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
Cons ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
KS ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
ATP5C1   10000 perm   1 sec   (6856 perm/sec)   p_kst 8.708000e-01   p_cons 8.247000e-01   p_joint 9.108000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5C1.2_941_10000_0.8708_0.8247_0.9108.png
                gene_name: ATP5C1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 81 percent done.
ATP5F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
KS ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
ATP5F1   10000 perm   1 sec   (7044 perm/sec)   p_kst 5.969000e-01   p_cons 6.752000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP5F1.2_799_10000_0.5969_0.6752_1.png
                gene_name: ATP5F1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ATP5G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
KS ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
ATP5G3   10000 perm   1 sec   (7097 perm/sec)   p_kst 8.951000e-01   p_cons 4.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP5G3.2_449_10000_0.8951_0.4797_1.png
                gene_name: ATP5G3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ATP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
Cons ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
KS ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
ATP5L   10000 perm   1 sec   (7160 perm/sec)   p_kst 2.380000e-01   p_cons 7.032000e-01   p_joint 3.950000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5L.2_324_10000_0.238_0.7032_0.395.png
                gene_name: ATP5L
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 87 percent done.
ATP5SL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
Cons ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
KS ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
ATP5SL   10000 perm   1 sec   (7141 perm/sec)   p_kst 7.773000e-01   p_cons 3.077000e-01   p_joint 4.355000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5SL.2_838_10000_0.7773_0.3077_0.4355.png
                gene_name: ATP5SL
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 88 percent done.
ATP6AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.352295e-02	ci left: 8.874939e-01	ci right 8.996757e-01	k: 8937	n:10000
Cons ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
KS ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
ATP6AP2   10000 perm   1 sec   (6688 perm/sec)   p_kst 4.776000e-01   p_cons 4.725000e-01   p_joint 8.937000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6AP2.2_1089_10000_0.4776_0.4725_0.8937.png
                gene_name: ATP6AP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 90 percent done.
ATP6V0A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
ATP6V0A1   10000 perm   2 sec   (6163 perm/sec)   p_kst 5.970000e-02   p_cons 6.045000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.247800e-02	ci left: 5.964302e-01	ci right 6.100397e-01	k: 12065	n:20000
KS ci ratio: 1.103976e-01	ci left: 5.601725e-02	ci right 6.261160e-02	k: 1185	n:20000
ATP6V0A1   20000 perm   4 sec   (5527 perm/sec)   p_kst 5.925000e-02   p_cons 6.032500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.841430e-02	ci left: 5.961006e-01	ci right 6.072130e-01	k: 18050	n:30000
KS ci ratio: 8.989847e-02	ci left: 5.691449e-02	ci right 6.230453e-02	k: 1787	n:30000
ATP6V0A1   30000 perm   6 sec   (5299 perm/sec)   p_kst 5.956667e-02   p_cons 6.016667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V0A1.2_2619_30000_0.059567_0.60167_1.png
                gene_name: ATP6V0A1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ATP6V0D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
Cons ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
KS ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
ATP6V0D1   10000 perm   1 sec   (6899 perm/sec)   p_kst 7.286000e-01   p_cons 5.299000e-01   p_joint 8.585000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0D1.2_1088_10000_0.7286_0.5299_0.8585.png
                gene_name: ATP6V0D1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 94 percent done.
ATP6V1B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
ATP6V1B2   10000 perm   2 sec   (6634 perm/sec)   p_kst 8.792000e-01   p_cons 9.681000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1B2.2_1592_10000_0.8792_0.9681_1.png
                gene_name: ATP6V1B2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ATP6V1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
Cons ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
ATP6V1C2   10000 perm   1 sec   (6786 perm/sec)   p_kst 7.075000e-01   p_cons 5.037000e-01   p_joint 8.702000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1C2.2_1336_10000_0.7075_0.5037_0.8702.png
                gene_name: ATP6V1C2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
ATP6V1E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
Cons ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
KS ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
ATP6V1E2   10000 perm   1 sec   (6832 perm/sec)   p_kst 2.026000e-01   p_cons 5.150000e-02   p_joint 7.690000e-02

Joint ci ratio: 5.499005e-02	ci left: 1.969986e-01	ci right 2.081880e-01	k: 4051	n:20000
Cons ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
KS ci ratio: 5.479509e-02	ci left: 1.981367e-01	ci right 2.093496e-01	k: 4074	n:20000
ATP6V1E2   20000 perm   3 sec   (6088 perm/sec)   p_kst 2.037000e-01   p_cons 5.235000e-02   p_joint 2.025500e-01

Joint ci ratio: 3.606533e-02	ci left: 2.774100e-01	ci right 2.876321e-01	k: 8475	n:30000
Cons ci ratio: 9.541246e-02	ci left: 5.071964e-02	ci right 5.583398e-02	k: 1597	n:30000
KS ci ratio: 4.485773e-02	ci left: 1.983284e-01	ci right 2.074625e-01	k: 6086	n:30000
ATP6V1E2   30000 perm   5 sec   (5794 perm/sec)   p_kst 2.028667e-01   p_cons 5.323333e-02   p_joint 2.825000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1E2.2_685_30000_0.20287_0.053233_0.2825.png
                gene_name: ATP6V1E2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000013
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 13 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1529>
Subject: Job 4421727: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1529>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000014> was used as the working directory.
Started at Wed Oct 24 17:30:52 2012
Results reported at Wed Oct 24 19:17:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000014.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000014.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 14  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000014.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6920.34 sec.
    Max Memory :      6489 MB
    Max Swap   :      8895 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
14
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 14
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 14: processing genes 1177 - 1267
Calculating significance of each gene.
Using projection method.
1177	ATP6V1G3	1
1178	ATP6V1H	9.030779e-01
1179	ATP7A	7.577415e-02
1180	ATP7B	8.199074e-01
1181	ATP8A1	9.532761e-01
1182	ATP8A2	9.131820e-01
1183	ATP8B1	9.429565e-01
1184	ATP8B2	1
1185	ATP8B3	1
1186	ATP8B4	7.802088e-01
1187	ATP9A	9.523375e-01
1188	ATP9B	9.750676e-01
1189	ATPAF1	7.764524e-01
1190	ATPAF2	1
1191	ATPBD4	2.025024e-01
1192	ATPIF1	3.262791e-01
1193	ATR	6.216005e-01
1194	ATRIP	6.805098e-01
1195	ATRN	5.085835e-01
1196	ATRNL1	9.979215e-01
1197	ATRX	9.959900e-01
1198	ATXN1	6.261897e-02
1199	ATXN10	1
1200	ATXN2	8.585518e-01
1201	ATXN2L	9.126124e-01
1202	ATXN3	6.848906e-01
1203	ATXN3L	2.789037e-01
1204	ATXN7	1
1205	ATXN7L2	9.378643e-01
1206	ATXN7L3	7.033346e-01
1207	AUH	5.985349e-01
1208	AUP1	7.160029e-01
1209	AURKA	7.208443e-01
1210	AURKAIP1	1
1211	AURKB	9.036816e-01
1212	AURKC	5.294770e-01
1213	AUTS2	6.897477e-01
1214	AVEN	6.013216e-01
1215	AVIL	7.585435e-01
1216	AVL9	6.991638e-01
1217	AVP	1
1218	AVPI1	1
1219	AVPR1A	2.151574e-01
1220	AVPR1B	5.311628e-01
1221	AVPR2	1.616574e-01
1222	AWAT1	1.074866e-01
1223	AWAT2	7.866076e-01
1224	AXIN1	9.053310e-01
1225	AXIN2	9.415619e-01
1226	AXL	7.807383e-01
1227	AZGP1	1.066238e-01
1228	AZI1	8.759702e-01
1229	AZI2	1
1230	AZIN1	8.527126e-01
1231	AZU1	4.471668e-01
1232	B2M	3.525580e-01
1233	B3GALNT1	1
1234	B3GALNT2	9.575878e-01
1235	B3GALT1	5.055694e-01
1236	B3GALT2	7.731652e-01
1237	B3GALT4	1
1238	B3GALT5	8.447393e-01
1239	B3GALTL	1
1240	B3GAT1	8.514884e-01
1241	B3GAT2	2.288286e-01
1242	B3GAT3	9.377505e-01
1243	B3GNT1	8.402336e-01
1244	B3GNT2	1
1245	B3GNT3	8.585589e-01
1246	B3GNT4	1
1247	B3GNT5	7.527385e-01
1248	B3GNT6	1.438400e-01
1249	B3GNT7	1
1250	B3GNT8	8.086098e-01
1251	B3GNT9	1
1252	B3GNTL1	1
1253	B4GALNT1	6.431384e-01
1254	B4GALNT2	1
1255	B4GALNT3	9.249307e-01
1256	B4GALNT4	4.968005e-01
1257	B4GALT1	9.296598e-01
1258	B4GALT2	7.415919e-01
1259	B4GALT3	8.631280e-01
1260	B4GALT4	1
1261	B4GALT5	6.274078e-01
1262	B4GALT6	2.121957e-01
1263	B4GALT7	1
In gene B9D1 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 576     n = 1	mu =   3.01e-07
1264	B9D1	3.925276e-01
1265	B9D2	1
1266	BAALC	3.849259e-01
1267	BAAT	1.149139e-01
Done

Running MutSig 2:
Scatter job 14: processing genes 1177 - 1267
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
ATRX   10000 perm   4 sec   (2802 perm/sec)   p_kst 6.860000e-02   p_cons 2.125000e-01   p_joint 8.010000e-02

Joint ci ratio: 1.106458e-01	ci left: 5.577376e-02	ci right 6.235516e-02	k: 1180	n:20000
Cons ci ratio: 5.343136e-02	ci left: 2.063526e-01	ci right 2.177312e-01	k: 4240	n:20000
KS ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
ATRX   20000 perm   11 sec   (1821 perm/sec)   p_kst 6.805000e-02   p_cons 2.120000e-01   p_joint 5.900000e-02

Joint ci ratio: 8.180295e-02	ci left: 6.818418e-02	ci right 7.403254e-02	k: 2132	n:30000
Cons ci ratio: 4.369862e-02	ci left: 2.068573e-01	ci right 2.161320e-01	k: 6344	n:30000
KS ci ratio: 8.319703e-02	ci left: 6.602637e-02	ci right 7.179079e-02	k: 2066	n:30000
ATRX   30000 perm   15 sec   (1982 perm/sec)   p_kst 6.886667e-02   p_cons 2.114667e-01   p_joint 7.106667e-02

Outputting figure to mutsig2_images.part000000000014/ATRX.18_7619_30000_0.068867_0.21147_0.071067.png
                gene_name: ATRX
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 2 percent done.
ATR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
Cons ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
KS ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
ATR   10000 perm   4 sec   (2739 perm/sec)   p_kst 8.713000e-01   p_cons 3.442000e-01   p_joint 6.584000e-01

Outputting figure to mutsig2_images.part000000000014/ATR.17_8123_10000_0.8713_0.3442_0.6584.png
                gene_name: ATR
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 4 percent done.
ATRNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
ATRNL1   10000 perm   3 sec   (3587 perm/sec)   p_kst 7.560000e-02   p_cons 1.096000e-01   p_joint 7.230000e-02

Joint ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
Cons ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
KS ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
ATRNL1   20000 perm   6 sec   (3096 perm/sec)   p_kst 7.785000e-02   p_cons 1.094500e-01   p_joint 4.455000e-02

Joint ci ratio: 9.417389e-02	ci left: 5.202303e-02	ci right 5.719698e-02	k: 1637	n:30000
Cons ci ratio: 6.417871e-02	ci left: 1.070392e-01	ci right 1.141697e-01	k: 3317	n:30000
KS ci ratio: 7.766649e-02	ci left: 7.521887e-02	ci right 8.132976e-02	k: 2347	n:30000
ATRNL1   30000 perm   10 sec   (2950 perm/sec)   p_kst 7.823333e-02   p_cons 1.105667e-01   p_joint 5.456667e-02

Outputting figure to mutsig2_images.part000000000014/ATRNL1.17_4256_30000_0.078233_0.11057_0.054567.png
                gene_name: ATRNL1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 5 percent done.
ATP7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
KS ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
ATP7A   10000 perm   3 sec   (3748 perm/sec)   p_kst 7.826000e-01   p_cons 1.197000e-01   p_joint 3.137000e-01

Joint ci ratio: 4.437683e-02	ci left: 2.743805e-01	ci right 2.868833e-01	k: 5612	n:20000
Cons ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
KS ci ratio: 1.463522e-02	ci left: 7.762120e-01	ci right 7.877059e-01	k: 15640	n:20000
ATP7A   20000 perm   6 sec   (3435 perm/sec)   p_kst 7.820000e-01   p_cons 1.181000e-01   p_joint 2.806000e-01

Outputting figure to mutsig2_images.part000000000014/ATP7A.14_4591_20000_0.782_0.1181_0.2806.png
                gene_name: ATP7A
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 7 percent done.
ATP8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
KS ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
ATP8A2   10000 perm   3 sec   (3688 perm/sec)   p_kst 4.560000e-01   p_cons 3.177000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8A2.14_3715_10000_0.456_0.3177_0.5634.png
                gene_name: ATP8A2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 9 percent done.
ATP7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
KS ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
ATP7B   10000 perm   3 sec   (3299 perm/sec)   p_kst 3.719000e-01   p_cons 3.406000e-01   p_joint 4.912000e-01

Outputting figure to mutsig2_images.part000000000014/ATP7B.11_4482_10000_0.3719_0.3406_0.4912.png
                gene_name: ATP7B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 11 percent done.
ATRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
KS ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
ATRN   10000 perm   3 sec   (3707 perm/sec)   p_kst 1.328000e-01   p_cons 2.200000e-03   p_joint 1.630000e-02

Joint ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
Cons ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
KS ci ratio: 6.956788e-02	ci left: 1.322134e-01	ci right 1.417924e-01	k: 2739	n:20000
ATRN   20000 perm   6 sec   (3471 perm/sec)   p_kst 1.369500e-01   p_cons 2.100000e-03   p_joint 1.540000e-02

Joint ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
Cons ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
KS ci ratio: 5.705182e-02	ci left: 1.320739e-01	ci right 1.398634e-01	k: 4078	n:30000
ATRN   30000 perm   9 sec   (3381 perm/sec)   p_kst 1.359333e-01   p_cons 2.033333e-03   p_joint 1.343333e-02

Joint ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
Cons ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
KS ci ratio: 4.933849e-02	ci left: 1.329269e-01	ci right 1.396760e-01	k: 5451	n:40000
ATRN   40000 perm   12 sec   (3304 perm/sec)   p_kst 1.362750e-01   p_cons 2.125000e-03   p_joint 1.112500e-02

Joint ci ratio: 1.856276e-01	ci left: 8.019069e-03	ci right 9.678709e-03	k: 441	n:50000
Cons ci ratio: 3.344457e-01	ci left: 2.282567e-03	ci right 3.216655e-03	k: 136	n:50000
KS ci ratio: 4.390254e-02	ci left: 1.344926e-01	ci right 1.405496e-01	k: 6875	n:50000
ATRN   50000 perm   15 sec   (3238 perm/sec)   p_kst 1.375000e-01   p_cons 2.720000e-03   p_joint 8.820000e-03

Joint ci ratio: 1.793375e-01	ci left: 7.191250e-03	ci right 8.623630e-03	k: 473	n:60000
Cons ci ratio: 3.002216e-01	ci left: 2.408480e-03	ci right 3.274056e-03	k: 169	n:60000
KS ci ratio: 4.008078e-02	ci left: 1.347372e-01	ci right 1.402646e-01	k: 8249	n:60000
ATRN   60000 perm   19 sec   (3151 perm/sec)   p_kst 1.374833e-01   p_cons 2.816667e-03   p_joint 7.883333e-03

Joint ci ratio: 1.349265e-01	ci left: 1.110985e-02	ci right 1.273099e-02	k: 833	n:70000
Cons ci ratio: 2.754100e-01	ci left: 2.488626e-03	ci right 3.296313e-03	k: 201	n:70000
KS ci ratio: 3.629833e-02	ci left: 1.402159e-01	ci right 1.454138e-01	k: 9996	n:70000
ATRN   70000 perm   22 sec   (3115 perm/sec)   p_kst 1.428000e-01   p_cons 2.871429e-03   p_joint 1.190000e-02

Joint ci ratio: 1.282109e-01	ci left: 1.080899e-02	ci right 1.230175e-02	k: 923	n:80000
Cons ci ratio: 2.581037e-01	ci left: 2.504166e-03	ci right 3.257603e-03	k: 229	n:80000
KS ci ratio: 3.397333e-02	ci left: 1.402458e-01	ci right 1.451052e-01	k: 11413	n:80000
ATRN   80000 perm   26 sec   (3073 perm/sec)   p_kst 1.426625e-01   p_cons 2.862500e-03   p_joint 1.153750e-02

Joint ci ratio: 1.259065e-01	ci left: 9.984250e-03	ci right 1.133646e-02	k: 958	n:90000
Cons ci ratio: 2.395427e-01	ci left: 2.611451e-03	ci right 3.332287e-03	k: 266	n:90000
KS ci ratio: 3.196181e-02	ci left: 1.409065e-01	ci right 1.454943e-01	k: 12887	n:90000
ATRN   90000 perm   30 sec   (3034 perm/sec)   p_kst 1.431889e-01   p_cons 2.955556e-03   p_joint 1.064444e-02

Joint ci ratio: 1.635771e-01	ci left: 5.242784e-03	ci right 6.186233e-03	k: 570	n:100000
Cons ci ratio: 2.286720e-01	ci left: 2.595060e-03	ci right 3.274279e-03	k: 292	n:100000
KS ci ratio: 3.060534e-02	ci left: 1.387689e-01	ci right 1.430919e-01	k: 14092	n:100000
ATRN   100000 perm   33 sec   (2995 perm/sec)   p_kst 1.409200e-01   p_cons 2.920000e-03   p_joint 5.700000e-03

Joint ci ratio: 1.590633e-01	ci left: 5.054017e-03	ci right 5.936000e-03	k: 603	n:110000
Cons ci ratio: 2.154640e-01	ci left: 2.676826e-03	ci right 3.331631e-03	k: 329	n:110000
KS ci ratio: 2.929255e-02	ci left: 1.379544e-01	ci right 1.420646e-01	k: 15400	n:110000
ATRN   110000 perm   37 sec   (2958 perm/sec)   p_kst 1.400000e-01   p_cons 2.990909e-03   p_joint 5.481818e-03

Joint ci ratio: 1.571506e-01	ci left: 4.752844e-03	ci right 5.571350e-03	k: 618	n:120000
Cons ci ratio: 2.077432e-01	ci left: 2.651049e-03	ci right 3.273356e-03	k: 354	n:120000
KS ci ratio: 2.797591e-02	ci left: 1.386378e-01	ci right 1.425796e-01	k: 16872	n:120000
ATRN   120000 perm   41 sec   (2924 perm/sec)   p_kst 1.406000e-01   p_cons 2.950000e-03   p_joint 5.150000e-03

Joint ci ratio: 1.196821e-01	ci left: 7.694532e-03	ci right 8.681441e-03	k: 1063	n:130000
Cons ci ratio: 1.989672e-01	ci left: 2.680751e-03	ci right 3.280222e-03	k: 386	n:130000
KS ci ratio: 2.689302e-02	ci left: 1.385846e-01	ci right 1.423699e-01	k: 18261	n:130000
ATRN   130000 perm   45 sec   (2889 perm/sec)   p_kst 1.404692e-01   p_cons 2.969231e-03   p_joint 8.176923e-03

Joint ci ratio: 1.201161e-01	ci left: 7.096290e-03	ci right 8.009998e-03	k: 1056	n:140000
Cons ci ratio: 1.909886e-01	ci left: 2.713484e-03	ci right 3.293118e-03	k: 419	n:140000
KS ci ratio: 2.590846e-02	ci left: 1.387120e-01	ci right 1.423601e-01	k: 19674	n:140000
ATRN   140000 perm   49 sec   (2850 perm/sec)   p_kst 1.405286e-01   p_cons 2.992857e-03   p_joint 7.542857e-03

Joint ci ratio: 1.160174e-01	ci left: 7.114912e-03	ci right 7.997616e-03	k: 1132	n:150000
Cons ci ratio: 1.843073e-01	ci left: 2.729547e-03	ci right 3.289937e-03	k: 450	n:150000
KS ci ratio: 2.501226e-02	ci left: 1.389440e-01	ci right 1.424699e-01	k: 21105	n:150000
ATRN   150000 perm   53 sec   (2815 perm/sec)   p_kst 1.407000e-01   p_cons 3.000000e-03   p_joint 7.546667e-03

Joint ci ratio: 1.144782e-01	ci left: 6.858343e-03	ci right 7.697161e-03	k: 1163	n:160000
Cons ci ratio: 1.805498e-01	ci left: 2.672271e-03	ci right 3.208492e-03	k: 469	n:160000
KS ci ratio: 2.421180e-02	ci left: 1.390618e-01	ci right 1.424762e-01	k: 22522	n:160000
ATRN   160000 perm   58 sec   (2779 perm/sec)   p_kst 1.407625e-01   p_cons 2.931250e-03   p_joint 7.268750e-03

Joint ci ratio: 1.088117e-01	ci left: 7.164023e-03	ci right 7.994079e-03	k: 1287	n:170000
Cons ci ratio: 1.762912e-01	ci left: 2.644327e-03	ci right 3.161092e-03	k: 492	n:170000
KS ci ratio: 2.300424e-02	ci left: 1.442075e-01	ci right 1.475693e-01	k: 24800	n:170000
ATRN   170000 perm   62 sec   (2745 perm/sec)   p_kst 1.458824e-01   p_cons 2.894118e-03   p_joint 7.570588e-03

Joint ci ratio: 2.084353e-01	ci left: 1.756747e-03	ci right 2.170667e-03	k: 352	n:180000
Cons ci ratio: 1.948078e-01	ci left: 2.025819e-03	ci right 2.468234e-03	k: 403	n:180000
KS ci ratio: 2.233067e-02	ci left: 1.445376e-01	ci right 1.478072e-01	k: 26310	n:180000
ATRN   180000 perm   66 sec   (2713 perm/sec)   p_kst 1.461667e-01   p_cons 2.238889e-03   p_joint 1.955556e-03

Joint ci ratio: 2.019579e-01	ci left: 1.779123e-03	ci right 2.183682e-03	k: 375	n:190000
Cons ci ratio: 1.901590e-01	ci left: 2.019387e-03	ci right 2.448658e-03	k: 423	n:190000
KS ci ratio: 2.172900e-02	ci left: 1.446508e-01	ci right 1.478337e-01	k: 27785	n:190000
ATRN   190000 perm   71 sec   (2682 perm/sec)   p_kst 1.462368e-01   p_cons 2.226316e-03   p_joint 1.973684e-03

Joint ci ratio: 1.651223e-01	ci left: 2.577945e-03	ci right 3.046650e-03	k: 561	n:200000
Cons ci ratio: 1.862488e-01	ci left: 2.004176e-03	ci right 2.420462e-03	k: 441	n:200000
KS ci ratio: 2.209269e-02	ci left: 1.345005e-01	ci right 1.375101e-01	k: 27200	n:200000
ATRN   200000 perm   75 sec   (2650 perm/sec)   p_kst 1.360000e-01   p_cons 2.205000e-03   p_joint 2.805000e-03

Joint ci ratio: 1.602063e-01	ci left: 2.615073e-03	ci right 3.075011e-03	k: 596	n:210000
Cons ci ratio: 1.827694e-01	ci left: 1.985951e-03	ci right 2.389892e-03	k: 458	n:210000
KS ci ratio: 2.155635e-02	ci left: 1.345792e-01	ci right 1.375166e-01	k: 28569	n:210000
ATRN   210000 perm   80 sec   (2620 perm/sec)   p_kst 1.360429e-01   p_cons 2.180952e-03   p_joint 2.838095e-03

Joint ci ratio: 1.599483e-01	ci left: 2.504921e-03	ci right 2.944707e-03	k: 598	n:220000
Cons ci ratio: 1.778013e-01	ci left: 2.008532e-03	ci right 2.404767e-03	k: 484	n:220000
KS ci ratio: 2.105726e-02	ci left: 1.346516e-01	ci right 1.375216e-01	k: 29938	n:220000
ATRN   220000 perm   85 sec   (2589 perm/sec)   p_kst 1.360818e-01   p_cons 2.200000e-03   p_joint 2.718182e-03

Joint ci ratio: 1.628451e-01	ci left: 2.308375e-03	ci right 2.721712e-03	k: 577	n:230000
Cons ci ratio: 1.733876e-01	ci left: 2.025125e-03	ci right 2.413678e-03	k: 509	n:230000
KS ci ratio: 2.060846e-02	ci left: 1.345236e-01	ci right 1.373291e-01	k: 31262	n:230000
ATRN   230000 perm   90 sec   (2562 perm/sec)   p_kst 1.359217e-01   p_cons 2.213043e-03   p_joint 2.508696e-03

Joint ci ratio: 1.595664e-01	ci left: 2.308159e-03	ci right 2.712338e-03	k: 601	n:240000
Cons ci ratio: 1.700855e-01	ci left: 2.020495e-03	ci right 2.400020e-03	k: 529	n:240000
KS ci ratio: 2.016749e-02	ci left: 1.346351e-01	ci right 1.373821e-01	k: 32641	n:240000
ATRN   240000 perm   95 sec   (2534 perm/sec)   p_kst 1.360042e-01   p_cons 2.204167e-03   p_joint 2.504167e-03

Joint ci ratio: 1.573626e-01	ci left: 2.281134e-03	ci right 2.674542e-03	k: 618	n:250000
Cons ci ratio: 1.672701e-01	ci left: 2.008635e-03	ci right 2.379057e-03	k: 547	n:250000
KS ci ratio: 1.977823e-02	ci left: 1.344474e-01	ci right 1.371370e-01	k: 33947	n:250000
ATRN   250000 perm   100 sec   (2509 perm/sec)   p_kst 1.357880e-01   p_cons 2.188000e-03   p_joint 2.472000e-03

Joint ci ratio: 1.554929e-01	ci left: 2.248829e-03	ci right 2.631628e-03	k: 633	n:260000
Cons ci ratio: 1.644446e-01	ci left: 2.001423e-03	ci right 2.363664e-03	k: 566	n:260000
KS ci ratio: 1.940844e-02	ci left: 1.343015e-01	ci right 1.369374e-01	k: 35260	n:260000
ATRN   260000 perm   105 sec   (2483 perm/sec)   p_kst 1.356154e-01   p_cons 2.176923e-03   p_joint 2.434615e-03

Joint ci ratio: 1.162137e-01	ci left: 3.952353e-03	ci right 4.443568e-03	k: 1132	n:270000
Cons ci ratio: 1.616194e-01	ci left: 1.998348e-03	ci right 2.353215e-03	k: 586	n:270000
KS ci ratio: 1.903998e-02	ci left: 1.343955e-01	ci right 1.369827e-01	k: 36635	n:270000
ATRN   270000 perm   110 sec   (2457 perm/sec)   p_kst 1.356852e-01   p_cons 2.170370e-03   p_joint 4.192593e-03

Joint ci ratio: 1.163772e-01	ci left: 3.800778e-03	ci right 4.273864e-03	k: 1129	n:280000
Cons ci ratio: 1.594625e-01	ci left: 1.981824e-03	ci right 2.328610e-03	k: 602	n:280000
KS ci ratio: 1.871310e-02	ci left: 1.342165e-01	ci right 1.367553e-01	k: 37935	n:280000
ATRN   280000 perm   115 sec   (2429 perm/sec)   p_kst 1.354821e-01   p_cons 2.150000e-03   p_joint 4.032143e-03

Joint ci ratio: 1.288927e-01	ci left: 2.974336e-03	ci right 3.387415e-03	k: 921	n:290000
Cons ci ratio: 1.562553e-01	ci left: 1.996288e-03	ci right 2.337921e-03	k: 627	n:290000
KS ci ratio: 1.839085e-02	ci left: 1.341979e-01	ci right 1.366922e-01	k: 39278	n:290000
ATRN   290000 perm   121 sec   (2403 perm/sec)   p_kst 1.354414e-01   p_cons 2.162069e-03   p_joint 3.175862e-03

Joint ci ratio: 1.270470e-01	ci left: 2.962309e-03	ci right 3.367383e-03	k: 948	n:300000
Cons ci ratio: 1.543035e-01	ci left: 1.981005e-03	ci right 2.315396e-03	k: 643	n:300000
KS ci ratio: 1.809757e-02	ci left: 1.340148e-01	ci right 1.364656e-01	k: 40571	n:300000
ATRN   300000 perm   126 sec   (2375 perm/sec)   p_kst 1.352367e-01   p_cons 2.143333e-03   p_joint 3.160000e-03

Joint ci ratio: 1.296842e-01	ci left: 2.748086e-03	ci right 3.132267e-03	k: 910	n:310000
Cons ci ratio: 1.525389e-01	ci left: 1.963630e-03	ci right 2.290951e-03	k: 658	n:310000
KS ci ratio: 1.779773e-02	ci left: 1.341074e-01	ci right 1.365188e-01	k: 41946	n:310000
ATRN   310000 perm   132 sec   (2350 perm/sec)   p_kst 1.353097e-01   p_cons 2.122581e-03   p_joint 2.935484e-03

Joint ci ratio: 1.269925e-01	ci left: 2.780174e-03	ci right 3.160166e-03	k: 949	n:320000
Cons ci ratio: 1.509457e-01	ci left: 1.944354e-03	ci right 2.264770e-03	k: 672	n:320000
KS ci ratio: 1.750508e-02	ci left: 1.342910e-01	ci right 1.366656e-01	k: 43352	n:320000
ATRN   320000 perm   138 sec   (2326 perm/sec)   p_kst 1.354750e-01   p_cons 2.100000e-03   p_joint 2.965625e-03

Joint ci ratio: 1.250976e-01	ci left: 2.781034e-03	ci right 3.155051e-03	k: 978	n:330000
Cons ci ratio: 1.486444e-01	ci left: 1.946685e-03	ci right 2.262160e-03	k: 693	n:330000
KS ci ratio: 1.723330e-02	ci left: 1.343702e-01	ci right 1.367089e-01	k: 44727	n:330000
ATRN   330000 perm   143 sec   (2303 perm/sec)   p_kst 1.355364e-01   p_cons 2.100000e-03   p_joint 2.963636e-03

Joint ci ratio: 1.258139e-01	ci left: 2.667891e-03	ci right 3.028900e-03	k: 967	n:340000
Cons ci ratio: 1.472732e-01	ci left: 1.926248e-03	ci right 2.235278e-03	k: 706	n:340000
KS ci ratio: 1.697636e-02	ci left: 1.344098e-01	ci right 1.367140e-01	k: 46090	n:340000
ATRN   340000 perm   149 sec   (2280 perm/sec)   p_kst 1.355588e-01   p_cons 2.076471e-03   p_joint 2.844118e-03

Joint ci ratio: 9.989901e-02	ci left: 4.161122e-03	ci right 4.601431e-03	k: 1532	n:350000
Cons ci ratio: 1.453337e-01	ci left: 1.923511e-03	ci right 2.227685e-03	k: 725	n:350000
KS ci ratio: 1.672589e-02	ci left: 1.345129e-01	ci right 1.367846e-01	k: 47476	n:350000
ATRN   350000 perm   155 sec   (2257 perm/sec)   p_kst 1.356457e-01   p_cons 2.071429e-03   p_joint 4.377143e-03

Joint ci ratio: 8.898966e-02	ci left: 5.122457e-03	ci right 5.602225e-03	k: 1929	n:360000
Cons ci ratio: 1.430844e-01	ci left: 1.931664e-03	ci right 2.231997e-03	k: 748	n:360000
KS ci ratio: 1.648150e-02	ci left: 1.346769e-01	ci right 1.369178e-01	k: 48886	n:360000
ATRN   360000 perm   161 sec   (2235 perm/sec)   p_kst 1.357944e-01   p_cons 2.077778e-03   p_joint 5.358333e-03

Joint ci ratio: 8.876527e-02	ci left: 5.010425e-03	ci right 5.478456e-03	k: 1939	n:370000
Cons ci ratio: 1.409364e-01	ci left: 1.939411e-03	ci right 2.236041e-03	k: 771	n:370000
KS ci ratio: 1.625800e-02	ci left: 1.346815e-01	ci right 1.368918e-01	k: 50240	n:370000
ATRN   370000 perm   167 sec   (2212 perm/sec)   p_kst 1.357838e-01   p_cons 2.083784e-03   p_joint 5.240541e-03

Joint ci ratio: 8.918826e-02	ci left: 4.832238e-03	ci right 5.285886e-03	k: 1921	n:380000
Cons ci ratio: 1.386205e-01	ci left: 1.954403e-03	ci right 2.248009e-03	k: 797	n:380000
KS ci ratio: 1.603472e-02	ci left: 1.348119e-01	ci right 1.369936e-01	k: 51642	n:380000
ATRN   380000 perm   174 sec   (2190 perm/sec)   p_kst 1.359000e-01   p_cons 2.097368e-03   p_joint 5.055263e-03

Joint ci ratio: 9.298960e-02	ci left: 4.324907e-03	ci right 4.749173e-03	k: 1768	n:390000
Cons ci ratio: 1.364152e-01	ci left: 1.968664e-03	ci right 2.259325e-03	k: 823	n:390000
KS ci ratio: 1.583023e-02	ci left: 1.347902e-01	ci right 1.369435e-01	k: 52987	n:390000
ATRN   390000 perm   180 sec   (2170 perm/sec)   p_kst 1.358641e-01   p_cons 2.110256e-03   p_joint 4.533333e-03

Joint ci ratio: 9.244536e-02	ci left: 4.268061e-03	ci right 4.684167e-03	k: 1789	n:400000
Cons ci ratio: 1.352721e-01	ci left: 1.953257e-03	ci right 2.239032e-03	k: 837	n:400000
KS ci ratio: 1.562988e-02	ci left: 1.348220e-01	ci right 1.369483e-01	k: 54353	n:400000
ATRN   400000 perm   186 sec   (2149 perm/sec)   p_kst 1.358825e-01   p_cons 2.092500e-03   p_joint 4.472500e-03

Joint ci ratio: 7.866869e-02	ci left: 5.782628e-03	ci right 6.258540e-03	k: 2467	n:410000
Cons ci ratio: 1.336083e-01	ci left: 1.955114e-03	ci right 2.237363e-03	k: 858	n:410000
KS ci ratio: 1.541886e-02	ci left: 1.351271e-01	ci right 1.372292e-01	k: 55832	n:410000
ATRN   410000 perm   193 sec   (2129 perm/sec)   p_kst 1.361756e-01   p_cons 2.092683e-03   p_joint 6.017073e-03

Joint ci ratio: 7.841907e-02	ci left: 5.682282e-03	ci right 6.148383e-03	k: 2483	n:420000
Cons ci ratio: 1.317796e-01	ci left: 1.963810e-03	ci right 2.243130e-03	k: 882	n:420000
KS ci ratio: 1.523879e-02	ci left: 1.350691e-01	ci right 1.371455e-01	k: 57164	n:420000
ATRN   420000 perm   199 sec   (2110 perm/sec)   p_kst 1.361048e-01   p_cons 2.100000e-03   p_joint 5.911905e-03

Joint ci ratio: 7.112814e-02	ci left: 6.764392e-03	ci right 7.265541e-03	k: 3015	n:430000
Cons ci ratio: 1.252050e-01	ci left: 2.131984e-03	ci right 2.418974e-03	k: 977	n:430000
KS ci ratio: 1.506325e-02	ci left: 1.350393e-01	ci right 1.370912e-01	k: 58507	n:430000
ATRN   430000 perm   206 sec   (2090 perm/sec)   p_kst 1.360628e-01   p_cons 2.272093e-03   p_joint 7.011628e-03

Joint ci ratio: 7.089754e-02	ci left: 6.655290e-03	ci right 7.146692e-03	k: 3035	n:440000
Cons ci ratio: 1.239445e-01	ci left: 2.127568e-03	ci right 2.410868e-03	k: 997	n:440000
KS ci ratio: 1.489824e-02	ci left: 1.349386e-01	ci right 1.369662e-01	k: 59818	n:440000
ATRN   440000 perm   212 sec   (2071 perm/sec)   p_kst 1.359500e-01   p_cons 2.265909e-03   p_joint 6.897727e-03

Joint ci ratio: 7.105634e-02	ci left: 6.478998e-03	ci right 6.958498e-03	k: 3022	n:450000
Cons ci ratio: 1.224803e-01	ci left: 2.131978e-03	ci right 2.412270e-03	k: 1021	n:450000
KS ci ratio: 1.473185e-02	ci left: 1.349487e-01	ci right 1.369537e-01	k: 61177	n:450000
ATRN   450000 perm   219 sec   (2053 perm/sec)   p_kst 1.359489e-01   p_cons 2.268889e-03   p_joint 6.715556e-03

Joint ci ratio: 7.255009e-02	ci left: 6.077649e-03	ci right 6.537299e-03	k: 2900	n:460000
Cons ci ratio: 1.211249e-01	ci left: 2.134108e-03	ci right 2.411351e-03	k: 1044	n:460000
KS ci ratio: 1.456525e-02	ci left: 1.350496e-01	ci right 1.370332e-01	k: 62578	n:460000
ATRN   460000 perm   226 sec   (2035 perm/sec)   p_kst 1.360391e-01   p_cons 2.269565e-03   p_joint 6.304348e-03

Joint ci ratio: 7.193385e-02	ci left: 6.052795e-03	ci right 6.506515e-03	k: 2950	n:470000
Cons ci ratio: 1.197013e-01	ci left: 2.140291e-03	ci right 2.414839e-03	k: 1069	n:470000
KS ci ratio: 1.440626e-02	ci left: 1.351124e-01	ci right 1.370751e-01	k: 63963	n:470000
ATRN   470000 perm   233 sec   (2015 perm/sec)   p_kst 1.360915e-01   p_cons 2.274468e-03   p_joint 6.276596e-03

Joint ci ratio: 7.157343e-02	ci left: 5.988067e-03	ci right 6.434592e-03	k: 2980	n:480000
Cons ci ratio: 1.187076e-01	ci left: 2.132083e-03	ci right 2.403148e-03	k: 1087	n:480000
KS ci ratio: 1.425843e-02	ci left: 1.350730e-01	ci right 1.370148e-01	k: 65300	n:480000
ATRN   480000 perm   244 sec   (1968 perm/sec)   p_kst 1.360417e-01   p_cons 2.264583e-03   p_joint 6.208333e-03

Joint ci ratio: 7.159008e-02	ci left: 5.863844e-03	ci right 6.301211e-03	k: 2979	n:490000
Cons ci ratio: 1.176849e-01	ci left: 2.126200e-03	ci right 2.394026e-03	k: 1106	n:490000
KS ci ratio: 1.411077e-02	ci left: 1.351065e-01	ci right 1.370285e-01	k: 66672	n:490000
ATRN   490000 perm   252 sec   (1946 perm/sec)   p_kst 1.360653e-01   p_cons 2.257143e-03   p_joint 6.079592e-03

Joint ci ratio: 7.129423e-02	ci left: 5.795666e-03	ci right 6.226088e-03	k: 3004	n:500000
Cons ci ratio: 1.166882e-01	ci left: 2.120561e-03	ci right 2.385259e-03	k: 1125	n:500000
KS ci ratio: 1.396713e-02	ci left: 1.351467e-01	ci right 1.370495e-01	k: 68048	n:500000
ATRN   500000 perm   259 sec   (1931 perm/sec)   p_kst 1.360960e-01   p_cons 2.250000e-03   p_joint 6.008000e-03

Joint ci ratio: 7.075573e-02	ci left: 5.770617e-03	ci right 6.195809e-03	k: 3050	n:510000
Cons ci ratio: 1.158686e-01	ci left: 2.109441e-03	ci right 2.370775e-03	k: 1141	n:510000
KS ci ratio: 1.382756e-02	ci left: 1.351893e-01	ci right 1.370736e-01	k: 69426	n:510000
ATRN   510000 perm   266 sec   (1916 perm/sec)   p_kst 1.361294e-01   p_cons 2.237255e-03   p_joint 5.980392e-03

Joint ci ratio: 7.050458e-02	ci left: 5.701197e-03	ci right 6.119721e-03	k: 3072	n:520000
Cons ci ratio: 1.146698e-01	ci left: 2.113698e-03	ci right 2.372667e-03	k: 1165	n:520000
KS ci ratio: 1.369287e-02	ci left: 1.352170e-01	ci right 1.370832e-01	k: 70797	n:520000
ATRN   520000 perm   273 sec   (1901 perm/sec)   p_kst 1.361481e-01   p_cons 2.240385e-03   p_joint 5.907692e-03

Joint ci ratio: 7.013077e-02	ci left: 5.654792e-03	ci right 6.067619e-03	k: 3105	n:530000
Cons ci ratio: 1.134119e-01	ci left: 2.121475e-03	ci right 2.378354e-03	k: 1191	n:530000
KS ci ratio: 1.356096e-02	ci left: 1.352626e-01	ci right 1.371112e-01	k: 72178	n:530000
ATRN   530000 perm   281 sec   (1887 perm/sec)   p_kst 1.361849e-01   p_cons 2.247170e-03   p_joint 5.858491e-03

Joint ci ratio: 6.947401e-02	ci left: 5.657426e-03	ci right 6.066421e-03	k: 3164	n:540000
Cons ci ratio: 1.124260e-01	ci left: 2.119979e-03	ci right 2.374298e-03	k: 1212	n:540000
KS ci ratio: 1.343299e-02	ci left: 1.353028e-01	ci right 1.371344e-01	k: 73557	n:540000
ATRN   540000 perm   288 sec   (1873 perm/sec)   p_kst 1.362167e-01   p_cons 2.244444e-03   p_joint 5.859259e-03

Joint ci ratio: 7.150549e-02	ci left: 5.240163e-03	ci right 5.630529e-03	k: 2988	n:550000
Cons ci ratio: 1.114202e-01	ci left: 2.120314e-03	ci right 2.372248e-03	k: 1234	n:550000
KS ci ratio: 1.330889e-02	ci left: 1.353362e-01	ci right 1.371512e-01	k: 74933	n:550000
ATRN   550000 perm   296 sec   (1859 perm/sec)   p_kst 1.362418e-01   p_cons 2.243636e-03   p_joint 5.432727e-03

Joint ci ratio: 7.190916e-02	ci left: 5.088702e-03	ci right 5.470015e-03	k: 2955	n:560000
Cons ci ratio: 1.103091e-01	ci left: 2.125856e-03	ci right 2.375766e-03	k: 1259	n:560000
KS ci ratio: 1.318437e-02	ci left: 1.354362e-01	ci right 1.372354e-01	k: 76347	n:560000
ATRN   560000 perm   304 sec   (1845 perm/sec)   p_kst 1.363339e-01   p_cons 2.248214e-03   p_joint 5.276786e-03

Joint ci ratio: 6.652648e-02	ci left: 5.852912e-03	ci right 6.257396e-03	k: 3450	n:570000
Cons ci ratio: 1.092305e-01	ci left: 2.131217e-03	ci right 2.379149e-03	k: 1284	n:570000
KS ci ratio: 1.307019e-02	ci left: 1.354085e-01	ci right 1.371917e-01	k: 77690	n:570000
ATRN   570000 perm   311 sec   (1831 perm/sec)   p_kst 1.362982e-01   p_cons 2.252632e-03   p_joint 6.052632e-03

Joint ci ratio: 6.671498e-02	ci left: 5.719774e-03	ci right 6.116220e-03	k: 3431	n:580000
Cons ci ratio: 1.083074e-01	ci left: 2.131371e-03	ci right 2.377092e-03	k: 1306	n:580000
KS ci ratio: 1.296044e-02	ci left: 1.353543e-01	ci right 1.371217e-01	k: 79017	n:580000
ATRN   580000 perm   319 sec   (1817 perm/sec)   p_kst 1.362362e-01   p_cons 2.251724e-03   p_joint 5.915517e-03

Joint ci ratio: 6.622520e-02	ci left: 5.707831e-03	ci right 6.100434e-03	k: 3482	n:590000
Cons ci ratio: 1.074072e-01	ci left: 2.131528e-03	ci right 2.375096e-03	k: 1328	n:590000
KS ci ratio: 1.284777e-02	ci left: 1.354052e-01	ci right 1.371577e-01	k: 80405	n:590000
ATRN   590000 perm   327 sec   (1804 perm/sec)   p_kst 1.362797e-01   p_cons 2.250847e-03   p_joint 5.901695e-03

Joint ci ratio: 6.730594e-02	ci left: 5.432402e-03	ci right 5.812395e-03	k: 3372	n:600000
Cons ci ratio: 1.063715e-01	ci left: 2.138178e-03	ci right 2.380002e-03	k: 1354	n:600000
KS ci ratio: 1.273672e-02	ci left: 1.354776e-01	ci right 1.372159e-01	k: 81807	n:600000
ATRN   600000 perm   335 sec   (1790 perm/sec)   p_kst 1.363450e-01   p_cons 2.256667e-03   p_joint 5.620000e-03

Joint ci ratio: 6.931064e-02	ci left: 5.035543e-03	ci right 5.398689e-03	k: 3181	n:610000
Cons ci ratio: 1.051744e-01	ci left: 2.152602e-03	ci right 2.393148e-03	k: 1385	n:610000
KS ci ratio: 1.263404e-02	ci left: 1.354448e-01	ci right 1.371685e-01	k: 83146	n:610000
ATRN   610000 perm   343 sec   (1776 perm/sec)   p_kst 1.363049e-01   p_cons 2.270492e-03   p_joint 5.214754e-03

Joint ci ratio: 6.897665e-02	ci left: 5.003457e-03	ci right 5.362480e-03	k: 3212	n:620000
Cons ci ratio: 1.043125e-01	ci left: 2.154007e-03	ci right 2.392617e-03	k: 1408	n:620000
KS ci ratio: 1.253192e-02	ci left: 1.354485e-01	ci right 1.371582e-01	k: 84507	n:620000
ATRN   620000 perm   352 sec   (1764 perm/sec)   p_kst 1.363016e-01   p_cons 2.270968e-03   p_joint 5.180645e-03

Joint ci ratio: 6.976963e-02	ci left: 4.811718e-03	ci right 5.161112e-03	k: 3140	n:630000
Cons ci ratio: 1.032908e-01	ci left: 2.163108e-03	ci right 2.400236e-03	k: 1436	n:630000
KS ci ratio: 1.242997e-02	ci left: 1.354948e-01	ci right 1.371911e-01	k: 85895	n:630000
ATRN   630000 perm   360 sec   (1750 perm/sec)   p_kst 1.363413e-01   p_cons 2.279365e-03   p_joint 4.984127e-03

Joint ci ratio: 7.594778e-02	ci left: 3.987835e-03	ci right 4.304179e-03	k: 2652	n:640000
Cons ci ratio: 1.025091e-01	ci left: 2.162799e-03	ci right 2.397992e-03	k: 1458	n:640000
KS ci ratio: 1.241650e-02	ci left: 1.339143e-01	ci right 1.355890e-01	k: 86240	n:640000
ATRN   640000 perm   368 sec   (1737 perm/sec)   p_kst 1.347500e-01   p_cons 2.278125e-03   p_joint 4.143750e-03

Joint ci ratio: 7.542392e-02	ci left: 3.982329e-03	ci right 4.295962e-03	k: 2689	n:650000
Cons ci ratio: 1.018139e-01	ci left: 2.159508e-03	ci right 2.392655e-03	k: 1478	n:650000
KS ci ratio: 1.231547e-02	ci left: 1.340182e-01	ci right 1.356804e-01	k: 87651	n:650000
ATRN   650000 perm   377 sec   (1725 perm/sec)   p_kst 1.348477e-01   p_cons 2.273846e-03   p_joint 4.136923e-03

Joint ci ratio: 7.500747e-02	ci left: 3.966589e-03	ci right 4.277182e-03	k: 2719	n:660000
Cons ci ratio: 1.007962e-01	ci left: 2.171092e-03	ci right 2.403008e-03	k: 1508	n:660000
KS ci ratio: 1.222090e-02	ci left: 1.340419e-01	ci right 1.356916e-01	k: 89011	n:660000
ATRN   660000 perm   385 sec   (1713 perm/sec)   p_kst 1.348652e-01   p_cons 2.284848e-03   p_joint 4.119697e-03

Joint ci ratio: 7.480297e-02	ci left: 3.929353e-03	ci right 4.236154e-03	k: 2734	n:670000
Cons ci ratio: 1.000694e-01	ci left: 2.170699e-03	ci right 2.400803e-03	k: 1530	n:670000
KS ci ratio: 1.213049e-02	ci left: 1.340263e-01	ci right 1.356635e-01	k: 90345	n:670000
ATRN   670000 perm   394 sec   (1701 perm/sec)   p_kst 1.348433e-01   p_cons 2.283582e-03   p_joint 4.080597e-03

Joint ci ratio: 7.491531e-02	ci left: 3.860018e-03	ci right 4.161878e-03	k: 2726	n:680000
Cons ci ratio: 9.916634e-02	ci left: 2.178928e-03	ci right 2.407698e-03	k: 1558	n:680000
KS ci ratio: 1.203834e-02	ci left: 1.340830e-01	ci right 1.357083e-01	k: 91728	n:680000
ATRN   680000 perm   402 sec   (1690 perm/sec)   p_kst 1.348941e-01   p_cons 2.291176e-03   p_joint 4.008824e-03

Outputting figure to mutsig2_images.part000000000014/ATRN.11_4428_680000_0.13489_0.0022912_0.0040088.png
                gene_name: ATRN
               theta_stop: 0.099 
                    nperm: 680000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0023 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0024 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 12 percent done.
ATXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
Cons ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
ATXN1   10000 perm   2 sec   (4277 perm/sec)   p_kst 2.300000e-02   p_cons 8.191000e-01   p_joint 1.925000e-01

Joint ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
Cons ci ratio: 1.288370e-02	ci left: 8.169811e-01	ci right 8.276250e-01	k: 16447	n:20000
KS ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
ATXN1   20000 perm   5 sec   (3902 perm/sec)   p_kst 2.235000e-02   p_cons 8.223500e-01   p_joint 6.555000e-02

Joint ci ratio: 8.968531e-02	ci left: 5.717552e-02	ci right 6.257677e-02	k: 1795	n:30000
Cons ci ratio: 1.054277e-02	ci left: 8.173209e-01	ci right 8.260167e-01	k: 24651	n:30000
KS ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
ATXN1   30000 perm   8 sec   (3765 perm/sec)   p_kst 2.306667e-02   p_cons 8.217000e-01   p_joint 5.983333e-02

Joint ci ratio: 6.793065e-02	ci left: 7.423346e-02	ci right 7.947817e-02	k: 3073	n:40000
Cons ci ratio: 9.188613e-03	ci left: 8.160229e-01	ci right 8.235806e-01	k: 32793	n:40000
KS ci ratio: 1.280989e-01	ci left: 2.140788e-02	ci right 2.436195e-02	k: 914	n:40000
ATXN1   40000 perm   11 sec   (3672 perm/sec)   p_kst 2.285000e-02   p_cons 8.198250e-01   p_joint 7.682500e-02

Joint ci ratio: 6.952389e-02	ci left: 5.769788e-02	ci right 6.187341e-02	k: 2988	n:50000
Cons ci ratio: 8.237567e-03	ci left: 8.157378e-01	ci right 8.225052e-01	k: 40957	n:50000
KS ci ratio: 1.133020e-01	ci left: 2.205379e-02	ci right 2.472194e-02	k: 1168	n:50000
ATXN1   50000 perm   14 sec   (3598 perm/sec)   p_kst 2.336000e-02   p_cons 8.191400e-01   p_joint 5.976000e-02

Joint ci ratio: 6.555027e-02	ci left: 5.440317e-02	ci right 5.810656e-02	k: 3374	n:60000
Cons ci ratio: 7.532673e-03	ci left: 8.155265e-01	ci right 8.217094e-01	k: 49118	n:60000
KS ci ratio: 1.033473e-01	ci left: 2.220517e-02	ci right 2.464123e-02	k: 1404	n:60000
ATXN1   60000 perm   17 sec   (3525 perm/sec)   p_kst 2.340000e-02   p_cons 8.186333e-01   p_joint 5.623333e-02

Joint ci ratio: 5.180880e-02	ci left: 7.363801e-02	ci right 7.756868e-02	k: 5291	n:70000
Cons ci ratio: 7.108521e-03	ci left: 8.099765e-01	ci right 8.157690e-01	k: 56902	n:70000
KS ci ratio: 9.592609e-02	ci left: 2.218117e-02	ci right 2.443001e-02	k: 1630	n:70000
ATXN1   70000 perm   20 sec   (3464 perm/sec)   p_kst 2.328571e-02   p_cons 8.128857e-01   p_joint 7.558571e-02

Outputting figure to mutsig2_images.part000000000014/ATXN1.10_2456_70000_0.023286_0.81289_0.075586.png
                gene_name: ATXN1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 14 percent done.
ATP8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
Cons ci ratio: 8.397618e-03	ci left: 9.520040e-01	ci right 9.601277e-01	k: 9562	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
ATP8B4   10000 perm   3 sec   (3901 perm/sec)   p_kst 7.551000e-01   p_cons 9.562000e-01   p_joint 9.033000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B4.9_3687_10000_0.7551_0.9562_0.9033.png
                gene_name: ATP8B4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 16 percent done.
AUTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
Cons ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
KS ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
AUTS2   10000 perm   2 sec   (4057 perm/sec)   p_kst 4.031000e-01   p_cons 3.774000e-01   p_joint 5.147000e-01

Outputting figure to mutsig2_images.part000000000014/AUTS2.8_4001_10000_0.4031_0.3774_0.5147.png
                gene_name: AUTS2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 18 percent done.
ATP9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
ATP9A   10000 perm   2 sec   (4315 perm/sec)   p_kst 6.019000e-01   p_cons 4.180000e-02   p_joint 1.872000e-01

Joint ci ratio: 5.197228e-02	ci left: 2.156617e-01	ci right 2.272194e-01	k: 4428	n:20000
Cons ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
KS ci ratio: 2.255790e-02	ci left: 5.947255e-01	ci right 6.083449e-01	k: 12031	n:20000
ATP9A   20000 perm   5 sec   (3807 perm/sec)   p_kst 6.015500e-01   p_cons 4.450000e-02   p_joint 2.214000e-01

Joint ci ratio: 4.998986e-02	ci left: 1.658308e-01	ci right 1.743665e-01	k: 5102	n:30000
Cons ci ratio: 1.047066e-01	ci left: 4.229167e-02	ci right 4.699703e-02	k: 1338	n:30000
KS ci ratio: 1.841942e-02	ci left: 5.959670e-01	ci right 6.070800e-01	k: 18046	n:30000
ATP9A   30000 perm   8 sec   (3639 perm/sec)   p_kst 6.015333e-01   p_cons 4.460000e-02   p_joint 1.700667e-01

Joint ci ratio: 3.980081e-02	ci left: 1.912759e-01	ci right 1.990684e-01	k: 7806	n:40000
Cons ci ratio: 9.037033e-02	ci left: 4.289121e-02	ci right 4.697518e-02	k: 1796	n:40000
KS ci ratio: 1.592716e-02	ci left: 5.974589e-01	ci right 6.070762e-01	k: 24091	n:40000
ATP9A   40000 perm   11 sec   (3548 perm/sec)   p_kst 6.022750e-01   p_cons 4.490000e-02   p_joint 1.951500e-01

Outputting figure to mutsig2_images.part000000000014/ATP9A.6_3256_40000_0.60228_0.0449_0.19515.png
                gene_name: ATP9A
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 20 percent done.
AVPR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
AVPR1A   10000 perm   2 sec   (5585 perm/sec)   p_kst 7.833000e-01   p_cons 7.683000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AVPR1A.6_1265_10000_0.7833_0.7683_1.png
                gene_name: AVPR1A
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
ATP8B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
ATP8B1   10000 perm   2 sec   (4219 perm/sec)   p_kst 8.982000e-01   p_cons 9.336000e-01   p_joint 9.740000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B1.5_3864_10000_0.8982_0.9336_0.974.png
                gene_name: ATP8B1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 23 percent done.
ATP8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
Cons ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
KS ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
ATP8B2   10000 perm   2 sec   (4364 perm/sec)   p_kst 7.300000e-02   p_cons 3.564000e-01   p_joint 1.184000e-01

Joint ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
Cons ci ratio: 3.708690e-02	ci left: 3.517004e-01	ci right 3.650408e-01	k: 7167	n:20000
KS ci ratio: 1.001870e-01	ci left: 6.752704e-02	ci right 7.469825e-02	k: 1421	n:20000
ATP8B2   20000 perm   5 sec   (3991 perm/sec)   p_kst 7.105000e-02   p_cons 3.583500e-01   p_joint 1.140000e-01

Joint ci ratio: 4.862374e-02	ci left: 1.737192e-01	ci right 1.824099e-01	k: 5341	n:30000
Cons ci ratio: 3.018060e-02	ci left: 3.544658e-01	ci right 3.653613e-01	k: 10797	n:30000
KS ci ratio: 8.121018e-02	ci left: 6.913257e-02	ci right 7.501729e-02	k: 2161	n:30000
ATP8B2   30000 perm   8 sec   (3838 perm/sec)   p_kst 7.203333e-02   p_cons 3.599000e-01   p_joint 1.780333e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B2.5_3914_30000_0.072033_0.3599_0.17803.png
                gene_name: ATP8B2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 25 percent done.
ATXN3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
Cons ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
ATXN3L   10000 perm   2 sec   (5386 perm/sec)   p_kst 5.000000e-04   p_cons 5.122000e-01   p_joint 1.000000e-02

Joint ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
Cons ci ratio: 2.734213e-02	ci left: 4.998456e-01	ci right 5.137525e-01	k: 10136	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
ATXN3L   20000 perm   4 sec   (4832 perm/sec)   p_kst 5.000000e-04   p_cons 5.068000e-01   p_joint 3.750000e-03

Joint ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
Cons ci ratio: 2.234764e-02	ci left: 5.006255e-01	ci right 5.119733e-01	k: 15189	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
ATXN3L   30000 perm   6 sec   (4622 perm/sec)   p_kst 4.333333e-04   p_cons 5.063000e-01   p_joint 2.000000e-03

Joint ci ratio: 3.934821e-01	ci left: 1.989462e-03	ci right 2.984965e-03	k: 98	n:40000
Cons ci ratio: 1.941978e-02	ci left: 4.996876e-01	ci right 5.095117e-01	k: 20184	n:40000
KS ci ratio: 8.763085e-01	ci left: 2.860045e-04	ci right 7.416724e-04	k: 19	n:40000
ATXN3L   40000 perm   9 sec   (4483 perm/sec)   p_kst 4.750000e-04   p_cons 5.046000e-01   p_joint 2.450000e-03

Joint ci ratio: 3.821471e-01	ci left: 1.699817e-03	ci right 2.519713e-03	k: 104	n:50000
Cons ci ratio: 1.743235e-02	ci left: 4.984074e-01	ci right 5.071923e-01	k: 25140	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
ATXN3L   50000 perm   11 sec   (4379 perm/sec)   p_kst 4.200000e-04   p_cons 5.028000e-01   p_joint 2.080000e-03

Joint ci ratio: 3.897229e-01	ci left: 1.356266e-03	ci right 2.026748e-03	k: 100	n:60000
Cons ci ratio: 1.595500e-02	ci left: 4.974909e-01	ci right 5.055089e-01	k: 30090	n:60000
KS ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
ATXN3L   60000 perm   14 sec   (4284 perm/sec)   p_kst 4.000000e-04   p_cons 5.015000e-01   p_joint 1.666667e-03

Joint ci ratio: 3.859621e-01	ci left: 1.188277e-03	ci right 1.768596e-03	k: 102	n:70000
Cons ci ratio: 1.476518e-02	ci left: 4.980032e-01	ci right 5.054253e-01	k: 35120	n:70000
KS ci ratio: 7.155323e-01	ci left: 2.774706e-04	ci right 5.949296e-04	k: 29	n:70000
ATXN3L   70000 perm   17 sec   (4191 perm/sec)   p_kst 4.142857e-04   p_cons 5.017143e-01   p_joint 1.457143e-03

Joint ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
Cons ci ratio: 1.381717e-02	ci left: 4.980415e-01	ci right 5.049834e-01	k: 40121	n:80000
KS ci ratio: 6.624518e-01	ci left: 2.943422e-04	ci right 5.938447e-04	k: 34	n:80000
ATXN3L   80000 perm   19 sec   (4107 perm/sec)   p_kst 4.250000e-04   p_cons 5.015125e-01   p_joint 1.450000e-03

Joint ci ratio: 3.435564e-01	ci left: 1.196811e-03	ci right 1.702866e-03	k: 129	n:90000
Cons ci ratio: 1.304266e-02	ci left: 4.976390e-01	ci right 5.041832e-01	k: 45082	n:90000
KS ci ratio: 6.196652e-01	ci left: 3.081599e-04	ci right 5.923338e-04	k: 39	n:90000
ATXN3L   90000 perm   22 sec   (4030 perm/sec)   p_kst 4.333333e-04   p_cons 5.009111e-01   p_joint 1.433333e-03

Joint ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
Cons ci ratio: 1.238380e-02	ci left: 4.973860e-01	ci right 5.035939e-01	k: 50049	n:100000
KS ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
ATXN3L   100000 perm   25 sec   (3956 perm/sec)   p_kst 4.500000e-04   p_cons 5.004900e-01   p_joint 1.210000e-03

Joint ci ratio: 3.264513e-01	ci left: 1.095773e-03	ci right 1.531204e-03	k: 143	n:110000
Cons ci ratio: 1.133455e-02	ci left: 5.179609e-01	ci right 5.238743e-01	k: 57301	n:110000
KS ci ratio: 5.542432e-01	ci left: 3.295673e-04	ci right 5.888723e-04	k: 49	n:110000
ATXN3L   110000 perm   28 sec   (3883 perm/sec)   p_kst 4.454545e-04   p_cons 5.209182e-01   p_joint 1.300000e-03

Joint ci ratio: 1.939766e-01	ci left: 3.062674e-03	ci right 3.728349e-03	k: 406	n:120000
Cons ci ratio: 1.087472e-02	ci left: 5.170437e-01	ci right 5.227054e-01	k: 62385	n:120000
KS ci ratio: 5.145947e-01	ci left: 3.597796e-04	ci right 6.153744e-04	k: 57	n:120000
ATXN3L   120000 perm   31 sec   (3814 perm/sec)   p_kst 4.750000e-04   p_cons 5.198750e-01   p_joint 3.383333e-03

Joint ci ratio: 2.220159e-01	ci left: 2.126789e-03	ci right 2.665022e-03	k: 310	n:130000
Cons ci ratio: 1.044629e-02	ci left: 5.172415e-01	ci right 5.226807e-01	k: 67595	n:130000
KS ci ratio: 4.977199e-01	ci left: 3.589428e-04	ci right 6.027063e-04	k: 61	n:130000
ATXN3L   130000 perm   35 sec   (3750 perm/sec)   p_kst 4.692308e-04   p_cons 5.199615e-01   p_joint 2.384615e-03

Joint ci ratio: 2.148819e-01	ci left: 2.116669e-03	ci right 2.632858e-03	k: 331	n:140000
Cons ci ratio: 1.005444e-02	ci left: 5.179291e-01	ci right 5.231700e-01	k: 72877	n:140000
KS ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
ATXN3L   140000 perm   38 sec   (3677 perm/sec)   p_kst 4.714286e-04   p_cons 5.205500e-01   p_joint 2.364286e-03

Joint ci ratio: 2.383480e-01	ci left: 1.585570e-03	ci right 2.020716e-03	k: 269	n:150000
Cons ci ratio: 9.707233e-03	ci left: 5.183415e-01	ci right 5.234043e-01	k: 78131	n:150000
KS ci ratio: 4.752605e-01	ci left: 3.461768e-04	ci right 5.672167e-04	k: 67	n:150000
ATXN3L   150000 perm   41 sec   (3617 perm/sec)   p_kst 4.466667e-04   p_cons 5.208733e-01   p_joint 1.793333e-03

Joint ci ratio: 2.336414e-01	ci left: 1.551154e-03	ci right 1.967234e-03	k: 280	n:160000
Cons ci ratio: 9.397550e-03	ci left: 5.184987e-01	ci right 5.234005e-01	k: 83352	n:160000
KS ci ratio: 4.618710e-01	ci left: 3.465882e-04	ci right 5.596978e-04	k: 71	n:160000
ATXN3L   160000 perm   45 sec   (3560 perm/sec)   p_kst 4.437500e-04   p_cons 5.209500e-01   p_joint 1.750000e-03

Joint ci ratio: 2.235235e-01	ci left: 1.604102e-03	ci right 2.013188e-03	k: 306	n:170000
Cons ci ratio: 9.120352e-03	ci left: 5.183867e-01	ci right 5.231420e-01	k: 88530	n:170000
KS ci ratio: 4.466230e-01	ci left: 3.522472e-04	ci right 5.595293e-04	k: 76	n:170000
ATXN3L   170000 perm   48 sec   (3506 perm/sec)   p_kst 4.470588e-04   p_cons 5.207647e-01   p_joint 1.800000e-03

Joint ci ratio: 2.185973e-01	ci left: 1.588455e-03	ci right 1.983423e-03	k: 320	n:180000
Cons ci ratio: 8.859413e-03	ci left: 5.186780e-01	ci right 5.232991e-01	k: 93778	n:180000
KS ci ratio: 4.437552e-01	ci left: 3.376098e-04	ci right 5.346203e-04	k: 77	n:180000
ATXN3L   180000 perm   52 sec   (3451 perm/sec)   p_kst 4.277778e-04   p_cons 5.209889e-01   p_joint 1.777778e-03

Joint ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
Cons ci ratio: 8.618204e-03	ci left: 5.190245e-01	ci right 5.235222e-01	k: 99042	n:190000
KS ci ratio: 4.354616e-01	ci left: 3.338822e-04	ci right 5.240095e-04	k: 80	n:190000
ATXN3L   190000 perm   56 sec   (3400 perm/sec)   p_kst 4.210526e-04   p_cons 5.212737e-01   p_joint 1.626316e-03

Joint ci ratio: 2.176008e-01	ci left: 1.443778e-03	ci right 1.800916e-03	k: 323	n:200000
Cons ci ratio: 8.394499e-03	ci left: 5.194079e-01	ci right 5.237914e-01	k: 104320	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
ATXN3L   200000 perm   60 sec   (3349 perm/sec)   p_kst 4.300000e-04   p_cons 5.216000e-01   p_joint 1.615000e-03

Joint ci ratio: 2.196557e-01	ci left: 1.348013e-03	ci right 1.685035e-03	k: 317	n:210000
Cons ci ratio: 8.190085e-03	ci left: 5.195894e-01	ci right 5.238671e-01	k: 109563	n:210000
KS ci ratio: 4.063941e-01	ci left: 3.531808e-04	ci right 5.372583e-04	k: 92	n:210000
ATXN3L   210000 perm   64 sec   (3295 perm/sec)   p_kst 4.380952e-04   p_cons 5.217286e-01   p_joint 1.509524e-03

Joint ci ratio: 2.136897e-01	ci left: 1.364119e-03	ci right 1.694692e-03	k: 335	n:220000
Cons ci ratio: 8.004138e-03	ci left: 5.194919e-01	ci right 5.236712e-01	k: 114748	n:220000
KS ci ratio: 3.919100e-01	ci left: 3.657524e-04	ci right 5.478320e-04	k: 99	n:220000
ATXN3L   220000 perm   68 sec   (3245 perm/sec)   p_kst 4.500000e-04   p_cons 5.215818e-01   p_joint 1.522727e-03

Joint ci ratio: 2.254220e-01	ci left: 1.165093e-03	ci right 1.465092e-03	k: 301	n:230000
Cons ci ratio: 8.155820e-03	ci left: 4.990501e-01	ci right 5.031412e-01	k: 115252	n:230000
KS ci ratio: 3.938892e-01	ci left: 3.459311e-04	ci right 5.192393e-04	k: 98	n:230000
ATXN3L   230000 perm   72 sec   (3198 perm/sec)   p_kst 4.260870e-04   p_cons 5.010957e-01   p_joint 1.308696e-03

Joint ci ratio: 2.203715e-01	ci left: 1.171625e-03	ci right 1.465631e-03	k: 315	n:240000
Cons ci ratio: 7.980241e-03	ci left: 4.993350e-01	ci right 5.033399e-01	k: 120321	n:240000
KS ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
ATXN3L   240000 perm   76 sec   (3151 perm/sec)   p_kst 4.375000e-04   p_cons 5.013375e-01   p_joint 1.312500e-03

Joint ci ratio: 1.740885e-01	ci left: 1.847795e-03	ci right 2.203908e-03	k: 505	n:250000
Cons ci ratio: 7.818720e-03	ci left: 4.993940e-01	ci right 5.033179e-01	k: 125339	n:250000
KS ci ratio: 3.919208e-01	ci left: 3.218605e-04	ci right 4.820950e-04	k: 99	n:250000
ATXN3L   250000 perm   81 sec   (3105 perm/sec)   p_kst 3.960000e-04   p_cons 5.013560e-01   p_joint 2.020000e-03

Joint ci ratio: 1.727325e-01	ci left: 1.806157e-03	ci right 2.151250e-03	k: 513	n:260000
Cons ci ratio: 7.669634e-03	ci left: 4.992531e-01	ci right 5.031007e-01	k: 130306	n:260000
KS ci ratio: 3.861718e-01	ci left: 3.198910e-04	ci right 4.762148e-04	k: 102	n:260000
ATXN3L   260000 perm   85 sec   (3062 perm/sec)   p_kst 3.923077e-04   p_cons 5.011769e-01   p_joint 1.973077e-03

Joint ci ratio: 1.734162e-01	ci left: 1.725083e-03	ci right 2.056126e-03	k: 509	n:270000
Cons ci ratio: 7.526029e-03	ci left: 4.993048e-01	ci right 5.030804e-01	k: 135322	n:270000
KS ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
ATXN3L   270000 perm   89 sec   (3019 perm/sec)   p_kst 3.962963e-04   p_cons 5.011926e-01   p_joint 1.885185e-03

Joint ci ratio: 1.696321e-01	ci left: 1.742091e-03	ci right 2.068357e-03	k: 532	n:280000
Cons ci ratio: 7.384238e-03	ci left: 4.997569e-01	ci right 5.034645e-01	k: 140451	n:280000
KS ci ratio: 3.686875e-01	ci left: 3.293698e-04	ci right 4.812844e-04	k: 112	n:280000
ATXN3L   280000 perm   94 sec   (2973 perm/sec)   p_kst 4.000000e-04   p_cons 5.016107e-01   p_joint 1.900000e-03

Joint ci ratio: 1.690035e-01	ci left: 1.695224e-03	ci right 2.011416e-03	k: 536	n:290000
Cons ci ratio: 7.255613e-03	ci left: 4.998026e-01	ci right 5.034456e-01	k: 145471	n:290000
KS ci ratio: 3.654688e-01	ci left: 3.242725e-04	ci right 4.722186e-04	k: 114	n:290000
ATXN3L   290000 perm   99 sec   (2935 perm/sec)   p_kst 3.931034e-04   p_cons 5.016241e-01   p_joint 1.848276e-03

Joint ci ratio: 2.672455e-01	ci left: 6.209836e-04	ci right 8.155377e-04	k: 214	n:300000
Cons ci ratio: 7.131106e-03	ci left: 5.000125e-01	ci right 5.035942e-01	k: 150541	n:300000
KS ci ratio: 3.300454e-01	ci left: 3.925825e-04	ci right 5.506618e-04	k: 140	n:300000
ATXN3L   300000 perm   103 sec   (2899 perm/sec)   p_kst 4.666667e-04   p_cons 5.018033e-01   p_joint 7.133333e-04

Joint ci ratio: 2.624078e-01	ci left: 6.250454e-04	ci right 8.167455e-04	k: 222	n:310000
Cons ci ratio: 7.015194e-03	ci left: 5.000383e-01	ci right 5.035617e-01	k: 155558	n:310000
KS ci ratio: 3.232390e-01	ci left: 3.976867e-04	ci right 5.538345e-04	k: 146	n:310000
ATXN3L   310000 perm   108 sec   (2861 perm/sec)   p_kst 4.709677e-04   p_cons 5.018000e-01   p_joint 7.161290e-04

Joint ci ratio: 2.654050e-01	ci left: 5.909199e-04	ci right 7.745680e-04	k: 217	n:320000
Cons ci ratio: 6.903159e-03	ci left: 5.001786e-01	ci right 5.036464e-01	k: 160612	n:320000
KS ci ratio: 3.178780e-01	ci left: 3.996271e-04	ci right 5.534050e-04	k: 151	n:320000
ATXN3L   320000 perm   113 sec   (2825 perm/sec)   p_kst 4.718750e-04   p_cons 5.019125e-01   p_joint 6.781250e-04

Joint ci ratio: 1.674679e-01	ci left: 1.518757e-03	ci right 1.799201e-03	k: 546	n:330000
Cons ci ratio: 6.797026e-03	ci left: 5.002592e-01	ci right 5.036741e-01	k: 165649	n:330000
KS ci ratio: 3.088634e-01	ci left: 4.126461e-04	ci right 5.660447e-04	k: 160	n:330000
ATXN3L   330000 perm   118 sec   (2790 perm/sec)   p_kst 4.848485e-04   p_cons 5.019667e-01   p_joint 1.654545e-03

Joint ci ratio: 1.673189e-01	ci left: 1.476903e-03	ci right 1.749351e-03	k: 547	n:340000
Cons ci ratio: 6.696666e-03	ci left: 5.002591e-01	ci right 5.036233e-01	k: 170660	n:340000
KS ci ratio: 3.041763e-01	ci left: 4.140845e-04	ci right 5.652297e-04	k: 165	n:340000
ATXN3L   340000 perm   123 sec   (2756 perm/sec)   p_kst 4.852941e-04   p_cons 5.019412e-01   p_joint 1.608824e-03

Joint ci ratio: 1.656656e-01	ci left: 1.464824e-03	ci right 1.732108e-03	k: 558	n:350000
Cons ci ratio: 6.596853e-03	ci left: 5.005450e-01	ci right 5.038607e-01	k: 175771	n:350000
KS ci ratio: 3.023615e-01	ci left: 4.075328e-04	ci right 5.552284e-04	k: 167	n:350000
ATXN3L   350000 perm   129 sec   (2722 perm/sec)   p_kst 4.771429e-04   p_cons 5.022029e-01   p_joint 1.594286e-03

Joint ci ratio: 1.644946e-01	ci left: 1.445438e-03	ci right 1.707135e-03	k: 566	n:360000
Cons ci ratio: 6.505237e-03	ci left: 5.005181e-01	ci right 5.037874e-01	k: 180775	n:360000
KS ci ratio: 2.979600e-01	ci left: 4.090556e-04	ci right 5.547370e-04	k: 172	n:360000
ATXN3L   360000 perm   134 sec   (2689 perm/sec)   p_kst 4.777778e-04   p_cons 5.021528e-01   p_joint 1.572222e-03

Joint ci ratio: 1.429928e-01	ci left: 1.882059e-03	ci right 2.174476e-03	k: 749	n:370000
Cons ci ratio: 6.169172e-03	ci left: 5.201997e-01	ci right 5.234215e-01	k: 193070	n:370000
KS ci ratio: 2.945744e-01	ci left: 4.080075e-04	ci right 5.513561e-04	k: 176	n:370000
ATXN3L   370000 perm   139 sec   (2657 perm/sec)   p_kst 4.756757e-04   p_cons 5.218108e-01   p_joint 2.024324e-03

Joint ci ratio: 1.228773e-01	ci left: 2.506885e-03	ci right 2.837613e-03	k: 1014	n:380000
Cons ci ratio: 6.090865e-03	ci left: 5.199418e-01	ci right 5.231210e-01	k: 198182	n:380000
KS ci ratio: 2.881336e-01	ci left: 4.167851e-04	ci right 5.594330e-04	k: 184	n:380000
ATXN3L   380000 perm   145 sec   (2627 perm/sec)   p_kst 4.842105e-04   p_cons 5.215316e-01   p_joint 2.668421e-03

Joint ci ratio: 1.216265e-01	ci left: 2.494805e-03	ci right 2.820347e-03	k: 1035	n:390000
Cons ci ratio: 6.013238e-03	ci left: 5.198821e-01	ci right 5.230202e-01	k: 203366	n:390000
KS ci ratio: 2.865897e-01	ci left: 4.108567e-04	ci right 5.505857e-04	k: 186	n:390000
ATXN3L   390000 perm   150 sec   (2597 perm/sec)   p_kst 4.769231e-04   p_cons 5.214513e-01   p_joint 2.653846e-03

Joint ci ratio: 1.202990e-01	ci left: 2.488194e-03	ci right 2.809078e-03	k: 1058	n:400000
Cons ci ratio: 5.938267e-03	ci left: 5.198455e-01	ci right 5.229442e-01	k: 208558	n:400000
KS ci ratio: 2.806482e-01	ci left: 4.191633e-04	ci right 5.582393e-04	k: 194	n:400000
ATXN3L   400000 perm   156 sec   (2567 perm/sec)   p_kst 4.850000e-04   p_cons 5.213950e-01   p_joint 2.645000e-03

Joint ci ratio: 1.191245e-01	ci left: 2.477192e-03	ci right 2.793317e-03	k: 1079	n:410000
Cons ci ratio: 5.863853e-03	ci left: 5.199964e-01	ci right 5.230569e-01	k: 213826	n:410000
KS ci ratio: 2.792210e-01	ci left: 4.134752e-04	ci right 5.498436e-04	k: 196	n:410000
ATXN3L   410000 perm   161 sec   (2539 perm/sec)   p_kst 4.780488e-04   p_cons 5.215268e-01   p_joint 2.631707e-03

Joint ci ratio: 1.178228e-01	ci left: 2.473660e-03	ci right 2.785646e-03	k: 1103	n:420000
Cons ci ratio: 5.793329e-03	ci left: 5.200403e-01	ci right 5.230642e-01	k: 219052	n:420000
KS ci ratio: 2.771195e-01	ci left: 4.102752e-04	ci right 5.443921e-04	k: 199	n:420000
ATXN3L   420000 perm   167 sec   (2512 perm/sec)   p_kst 4.738095e-04   p_cons 5.215524e-01   p_joint 2.626190e-03

Joint ci ratio: 1.179336e-01	ci left: 2.411614e-03	ci right 2.716080e-03	k: 1101	n:430000
Cons ci ratio: 5.726463e-03	ci left: 5.199800e-01	ci right 5.229685e-01	k: 224234	n:430000
KS ci ratio: 2.723929e-01	ci left: 4.158918e-04	ci right 5.491293e-04	k: 206	n:430000
ATXN3L   430000 perm   173 sec   (2485 perm/sec)   p_kst 4.790698e-04   p_cons 5.214744e-01   p_joint 2.560465e-03

Joint ci ratio: 1.554480e-01	ci left: 1.330988e-03	ci right 1.557477e-03	k: 634	n:440000
Cons ci ratio: 5.888500e-03	ci left: 5.003101e-01	ci right 5.032671e-01	k: 220787	n:440000
KS ci ratio: 2.691615e-01	ci left: 4.170320e-04	ci right 5.487822e-04	k: 211	n:440000
ATXN3L   440000 perm   179 sec   (2458 perm/sec)   p_kst 4.795455e-04   p_cons 5.017886e-01   p_joint 1.440909e-03

Joint ci ratio: 1.566909e-01	ci left: 1.280054e-03	ci right 1.499780e-03	k: 624	n:450000
Cons ci ratio: 5.820891e-03	ci left: 5.004825e-01	ci right 5.034064e-01	k: 225875	n:450000
KS ci ratio: 2.691630e-01	ci left: 4.077643e-04	ci right 5.365875e-04	k: 211	n:450000
ATXN3L   450000 perm   185 sec   (2433 perm/sec)   p_kst 4.688889e-04   p_cons 5.019444e-01   p_joint 1.386667e-03

Joint ci ratio: 1.554529e-01	ci left: 1.273116e-03	ci right 1.489764e-03	k: 634	n:460000
Cons ci ratio: 5.756308e-03	ci left: 5.005823e-01	ci right 5.034742e-01	k: 230933	n:460000
KS ci ratio: 2.672790e-01	ci left: 4.049830e-04	ci right 5.318819e-04	k: 214	n:460000
ATXN3L   460000 perm   191 sec   (2409 perm/sec)   p_kst 4.652174e-04   p_cons 5.020283e-01   p_joint 1.378261e-03

Joint ci ratio: 1.538858e-01	ci left: 1.272618e-03	ci right 1.486796e-03	k: 647	n:470000
Cons ci ratio: 5.692980e-03	ci left: 5.007525e-01	ci right 5.036135e-01	k: 236026	n:470000
KS ci ratio: 2.618533e-01	ci left: 4.142458e-04	ci right 5.409808e-04	k: 223	n:470000
ATXN3L   470000 perm   197 sec   (2385 perm/sec)   p_kst 4.744681e-04   p_cons 5.021830e-01   p_joint 1.376596e-03

Joint ci ratio: 1.520201e-01	ci left: 1.278163e-03	ci right 1.490429e-03	k: 663	n:480000
Cons ci ratio: 5.633221e-03	ci left: 5.007803e-01	ci right 5.036113e-01	k: 241054	n:480000
KS ci ratio: 2.595464e-01	ci left: 4.134044e-04	ci right 5.385871e-04	k: 227	n:480000
ATXN3L   480000 perm   203 sec   (2360 perm/sec)   p_kst 4.729167e-04   p_cons 5.021958e-01   p_joint 1.381250e-03

Joint ci ratio: 1.503314e-01	ci left: 1.281532e-03	ci right 1.491781e-03	k: 678	n:490000
Cons ci ratio: 5.576103e-03	ci left: 5.007357e-01	ci right 5.035377e-01	k: 246047	n:490000
KS ci ratio: 2.551085e-01	ci left: 4.202414e-04	ci right 5.449724e-04	k: 235	n:490000
ATXN3L   490000 perm   210 sec   (2336 perm/sec)   p_kst 4.795918e-04   p_cons 5.021367e-01   p_joint 1.383673e-03

Joint ci ratio: 1.524849e-01	ci left: 1.219338e-03	ci right 1.422511e-03	k: 659	n:500000
Cons ci ratio: 5.518699e-03	ci left: 5.008731e-01	ci right 5.036469e-01	k: 251130	n:500000
KS ci ratio: 2.508908e-01	ci left: 4.268224e-04	ci right 5.510850e-04	k: 243	n:500000
ATXN3L   500000 perm   216 sec   (2313 perm/sec)   p_kst 4.860000e-04   p_cons 5.022600e-01   p_joint 1.318000e-03

Joint ci ratio: 1.274669e-01	ci left: 1.732973e-03	ci right 1.970783e-03	k: 943	n:510000
Cons ci ratio: 5.462904e-03	ci left: 5.010170e-01	ci right 5.037634e-01	k: 256219	n:510000
KS ci ratio: 2.488595e-01	ci left: 4.258053e-04	ci right 5.486128e-04	k: 247	n:510000
ATXN3L   510000 perm   223 sec   (2290 perm/sec)   p_kst 4.843137e-04   p_cons 5.023902e-01   p_joint 1.849020e-03

Joint ci ratio: 1.263346e-01	ci left: 1.731301e-03	ci right 1.966613e-03	k: 960	n:520000
Cons ci ratio: 5.409891e-03	ci left: 5.010516e-01	ci right 5.037715e-01	k: 261254	n:520000
KS ci ratio: 2.459024e-01	ci left: 4.284400e-04	ci right 5.503147e-04	k: 253	n:520000
ATXN3L   520000 perm   229 sec   (2266 perm/sec)   p_kst 4.865385e-04   p_cons 5.024115e-01   p_joint 1.846154e-03

Joint ci ratio: 1.252961e-01	ci left: 1.727873e-03	ci right 1.960646e-03	k: 976	n:530000
Cons ci ratio: 5.360171e-03	ci left: 5.009190e-01	ci right 5.036131e-01	k: 266201	n:530000
KS ci ratio: 2.435172e-01	ci left: 4.292118e-04	ci right 5.499427e-04	k: 258	n:530000
ATXN3L   530000 perm   236 sec   (2244 perm/sec)   p_kst 4.867925e-04   p_cons 5.022660e-01   p_joint 1.841509e-03

Joint ci ratio: 1.242829e-01	ci left: 1.724580e-03	ci right 1.954892e-03	k: 992	n:540000
Cons ci ratio: 5.312072e-03	ci left: 5.007655e-01	ci right 5.034345e-01	k: 271134	n:540000
KS ci ratio: 2.412001e-01	ci left: 4.299604e-04	ci right 5.495790e-04	k: 263	n:540000
ATXN3L   540000 perm   243 sec   (2224 perm/sec)   p_kst 4.870370e-04   p_cons 5.021000e-01   p_joint 1.837037e-03

Joint ci ratio: 1.286410e-01	ci left: 1.577011e-03	ci right 1.795565e-03	k: 926	n:550000
Cons ci ratio: 5.264765e-03	ci left: 5.006631e-01	ci right 5.033077e-01	k: 276092	n:550000
KS ci ratio: 2.398416e-01	ci left: 4.272687e-04	ci right 5.453694e-04	k: 266	n:550000
ATXN3L   550000 perm   250 sec   (2204 perm/sec)   p_kst 4.836364e-04   p_cons 5.019855e-01   p_joint 1.683636e-03

Joint ci ratio: 1.285042e-01	ci left: 1.552305e-03	ci right 1.767189e-03	k: 928	n:560000
Cons ci ratio: 5.217768e-03	ci left: 5.006538e-01	ci right 5.032747e-01	k: 281100	n:560000
KS ci ratio: 2.398427e-01	ci left: 4.196387e-04	ci right 5.356310e-04	k: 266	n:560000
ATXN3L   560000 perm   257 sec   (2183 perm/sec)   p_kst 4.750000e-04   p_cons 5.019643e-01   p_joint 1.657143e-03

Joint ci ratio: 1.281611e-01	ci left: 1.533561e-03	ci right 1.745240e-03	k: 933	n:570000
Cons ci ratio: 5.173477e-03	ci left: 5.005029e-01	ci right 5.031006e-01	k: 286027	n:570000
KS ci ratio: 2.376280e-01	ci left: 4.205239e-04	ci right 5.355296e-04	k: 271	n:570000
ATXN3L   570000 perm   263 sec   (2163 perm/sec)   p_kst 4.754386e-04   p_cons 5.018018e-01   p_joint 1.636842e-03

Joint ci ratio: 1.302034e-01	ci left: 1.458733e-03	ci right 1.663539e-03	k: 904	n:580000
Cons ci ratio: 5.129251e-03	ci left: 5.004589e-01	ci right 5.030342e-01	k: 291013	n:580000
KS ci ratio: 2.363286e-01	ci left: 4.181388e-04	ci right 5.317754e-04	k: 274	n:580000
ATXN3L   580000 perm   271 sec   (2143 perm/sec)   p_kst 4.724138e-04   p_cons 5.017466e-01   p_joint 1.558621e-03

Joint ci ratio: 1.324218e-01	ci left: 1.384828e-03	ci right 1.582831e-03	k: 874	n:590000
Cons ci ratio: 5.086725e-03	ci left: 5.003589e-01	ci right 5.029123e-01	k: 295965	n:590000
KS ci ratio: 2.342090e-01	ci left: 4.190268e-04	ci right 5.317354e-04	k: 279	n:590000
ATXN3L   590000 perm   278 sec   (2122 perm/sec)   p_kst 4.728814e-04   p_cons 5.016356e-01   p_joint 1.481356e-03

Joint ci ratio: 1.315233e-01	ci left: 1.381087e-03	ci right 1.577111e-03	k: 886	n:600000
Cons ci ratio: 5.044383e-03	ci left: 5.003474e-01	ci right 5.028793e-01	k: 300968	n:600000
KS ci ratio: 2.321454e-01	ci left: 4.198896e-04	ci right 5.316924e-04	k: 284	n:600000
ATXN3L   600000 perm   286 sec   (2099 perm/sec)   p_kst 4.733333e-04   p_cons 5.016133e-01   p_joint 1.476667e-03

Joint ci ratio: 1.307886e-01	ci left: 1.374301e-03	ci right 1.568188e-03	k: 896	n:610000
Cons ci ratio: 5.002424e-03	ci left: 5.004018e-01	ci right 5.029129e-01	k: 306011	n:610000
KS ci ratio: 2.297395e-01	ci left: 4.222732e-04	ci right 5.333802e-04	k: 290	n:610000
ATXN3L   610000 perm   293 sec   (2080 perm/sec)   p_kst 4.754098e-04   p_cons 5.016574e-01   p_joint 1.468852e-03

Joint ci ratio: 1.298512e-01	ci left: 1.372419e-03	ci right 1.564546e-03	k: 909	n:620000
Cons ci ratio: 4.962616e-03	ci left: 5.003417e-01	ci right 5.028325e-01	k: 310984	n:620000
KS ci ratio: 2.281767e-01	ci left: 4.215439e-04	ci right 5.315983e-04	k: 294	n:620000
ATXN3L   620000 perm   301 sec   (2061 perm/sec)   p_kst 4.741935e-04   p_cons 5.015871e-01   p_joint 1.466129e-03

Joint ci ratio: 1.318259e-01	ci left: 1.309177e-03	ci right 1.495456e-03	k: 882	n:630000
Cons ci ratio: 4.922555e-03	ci left: 5.004042e-01	ci right 5.028751e-01	k: 316033	n:630000
KS ci ratio: 2.270256e-01	ci left: 4.193431e-04	ci right 5.281932e-04	k: 297	n:630000
ATXN3L   630000 perm   308 sec   (2042 perm/sec)   p_kst 4.714286e-04   p_cons 5.016397e-01   p_joint 1.400000e-03

Joint ci ratio: 1.319771e-01	ci left: 1.285699e-03	ci right 1.468863e-03	k: 880	n:640000
Cons ci ratio: 4.883418e-03	ci left: 5.004680e-01	ci right 5.029195e-01	k: 321084	n:640000
KS ci ratio: 2.258917e-01	ci left: 4.172124e-04	ci right 5.248933e-04	k: 300	n:640000
ATXN3L   640000 perm   316 sec   (2024 perm/sec)   p_kst 4.687500e-04   p_cons 5.016938e-01   p_joint 1.375000e-03

Joint ci ratio: 1.307216e-01	ci left: 1.291213e-03	ci right 1.473277e-03	k: 897	n:650000
Cons ci ratio: 4.846393e-03	ci left: 5.004068e-01	ci right 5.028393e-01	k: 326055	n:650000
KS ci ratio: 2.222295e-01	ci left: 4.253152e-04	ci right 5.330643e-04	k: 310	n:650000
ATXN3L   650000 perm   325 sec   (2003 perm/sec)   p_kst 4.769231e-04   p_cons 5.016231e-01   p_joint 1.380000e-03

Joint ci ratio: 1.299285e-01	ci left: 1.287773e-03	ci right 1.468165e-03	k: 908	n:660000
Cons ci ratio: 4.809322e-03	ci left: 5.004384e-01	ci right 5.028525e-01	k: 331086	n:660000
KS ci ratio: 2.215188e-01	ci left: 4.217329e-04	ci right 5.281861e-04	k: 312	n:660000
ATXN3L   660000 perm   332 sec   (1985 perm/sec)   p_kst 4.727273e-04   p_cons 5.016455e-01   p_joint 1.375758e-03

Joint ci ratio: 1.326614e-01	ci left: 1.215139e-03	ci right 1.389219e-03	k: 871	n:670000
Cons ci ratio: 4.773731e-03	ci left: 5.004020e-01	ci right 5.027980e-01	k: 336072	n:670000
KS ci ratio: 2.204651e-01	ci left: 4.196681e-04	ci right 5.250279e-04	k: 315	n:670000
ATXN3L   670000 perm   341 sec   (1965 perm/sec)   p_kst 4.701493e-04   p_cons 5.016000e-01   p_joint 1.300000e-03

Joint ci ratio: 1.315348e-01	ci left: 1.218599e-03	ci right 1.391577e-03	k: 886	n:680000
Cons ci ratio: 4.738709e-03	ci left: 5.003888e-01	ci right 5.027671e-01	k: 341073	n:680000
KS ci ratio: 2.190829e-01	ci left: 4.190550e-04	ci right 5.235126e-04	k: 319	n:680000
ATXN3L   680000 perm   349 sec   (1948 perm/sec)   p_kst 4.691176e-04   p_cons 5.015779e-01   p_joint 1.302941e-03

Joint ci ratio: 1.316103e-01	ci left: 1.199536e-03	ci right 1.369913e-03	k: 885	n:690000
Cons ci ratio: 4.703220e-03	ci left: 5.005065e-01	ci right 5.028674e-01	k: 346164	n:690000
KS ci ratio: 2.177265e-01	ci left: 4.184617e-04	ci right 5.220392e-04	k: 323	n:690000
ATXN3L   690000 perm   357 sec   (1931 perm/sec)   p_kst 4.681159e-04   p_cons 5.016870e-01   p_joint 1.282609e-03

Joint ci ratio: 1.313890e-01	ci left: 1.186544e-03	ci right 1.354770e-03	k: 888	n:700000
Cons ci ratio: 4.669837e-03	ci left: 5.004794e-01	ci right 5.028234e-01	k: 351156	n:700000
KS ci ratio: 2.170580e-01	ci left: 4.151852e-04	ci right 5.175941e-04	k: 325	n:700000
ATXN3L   700000 perm   366 sec   (1915 perm/sec)   p_kst 4.642857e-04   p_cons 5.016514e-01   p_joint 1.268571e-03

Joint ci ratio: 1.304387e-01	ci left: 1.187542e-03	ci right 1.354598e-03	k: 901	n:710000
Cons ci ratio: 4.637416e-03	ci left: 5.004250e-01	ci right 5.027524e-01	k: 356128	n:710000
KS ci ratio: 2.154123e-01	ci left: 4.159984e-04	ci right 5.177270e-04	k: 330	n:710000
ATXN3L   710000 perm   374 sec   (1899 perm/sec)   p_kst 4.647887e-04   p_cons 5.015887e-01   p_joint 1.269014e-03

Joint ci ratio: 1.297931e-01	ci left: 1.183142e-03	ci right 1.348691e-03	k: 910	n:720000
Cons ci ratio: 4.605187e-03	ci left: 5.004236e-01	ci right 5.027348e-01	k: 361137	n:720000
KS ci ratio: 2.138035e-01	ci left: 4.167919e-04	ci right 5.178535e-04	k: 335	n:720000
ATXN3L   720000 perm   383 sec   (1881 perm/sec)   p_kst 4.652778e-04   p_cons 5.015792e-01   p_joint 1.263889e-03

Joint ci ratio: 1.292274e-01	ci left: 1.177538e-03	ci right 1.341530e-03	k: 918	n:730000
Cons ci ratio: 4.572331e-03	ci left: 5.005633e-01	ci right 5.028586e-01	k: 366249	n:730000
KS ci ratio: 2.125422e-01	ci left: 4.162694e-04	ci right 5.165312e-04	k: 339	n:730000
ATXN3L   730000 perm   391 sec   (1866 perm/sec)   p_kst 4.643836e-04   p_cons 5.017110e-01   p_joint 1.257534e-03

Joint ci ratio: 1.332060e-01	ci left: 1.091044e-03	ci right 1.248038e-03	k: 864	n:740000
Cons ci ratio: 4.541308e-03	ci left: 5.005736e-01	ci right 5.028534e-01	k: 371268	n:740000
KS ci ratio: 2.116109e-01	ci left: 4.144828e-04	ci right 5.138201e-04	k: 342	n:740000
ATXN3L   740000 perm   400 sec   (1849 perm/sec)   p_kst 4.621622e-04   p_cons 5.017135e-01   p_joint 1.167568e-03

Joint ci ratio: 1.321407e-01	ci left: 1.094544e-03	ci right 1.250683e-03	k: 878	n:750000
Cons ci ratio: 4.510825e-03	ci left: 5.005931e-01	ci right 5.028576e-01	k: 376294	n:750000
KS ci ratio: 2.103878e-01	ci left: 4.140079e-04	ci right 5.125839e-04	k: 346	n:750000
ATXN3L   750000 perm   409 sec   (1835 perm/sec)   p_kst 4.613333e-04   p_cons 5.017253e-01   p_joint 1.170667e-03

Joint ci ratio: 1.322925e-01	ci left: 1.077597e-03	ci right 1.231509e-03	k: 876	n:760000
Cons ci ratio: 4.481159e-03	ci left: 5.005884e-01	ci right 5.028379e-01	k: 381302	n:760000
KS ci ratio: 2.088882e-01	ci left: 4.147940e-04	ci right 5.127632e-04	k: 351	n:760000
ATXN3L   760000 perm   417 sec   (1821 perm/sec)   p_kst 4.618421e-04   p_cons 5.017132e-01   p_joint 1.152632e-03

Joint ci ratio: 1.315448e-01	ci left: 1.076160e-03	ci right 1.228931e-03	k: 886	n:770000
Cons ci ratio: 4.451158e-03	ci left: 5.006865e-01	ci right 5.029213e-01	k: 386389	n:770000
KS ci ratio: 2.077114e-01	ci left: 4.143309e-04	ci right 5.115694e-04	k: 355	n:770000
ATXN3L   770000 perm   426 sec   (1807 perm/sec)   p_kst 4.610390e-04   p_cons 5.018039e-01   p_joint 1.150649e-03

Joint ci ratio: 1.337529e-01	ci left: 1.026416e-03	ci right 1.174765e-03	k: 857	n:780000
Cons ci ratio: 4.421468e-03	ci left: 5.008141e-01	ci right 5.030346e-01	k: 391501	n:780000
KS ci ratio: 2.048535e-01	ci left: 4.211774e-04	ci right 5.184924e-04	k: 365	n:780000
ATXN3L   780000 perm   435 sec   (1792 perm/sec)   p_kst 4.679487e-04   p_cons 5.019244e-01   p_joint 1.098718e-03

Joint ci ratio: 1.158639e-01	ci left: 1.362990e-03	ci right 1.531839e-03	k: 1142	n:790000
Cons ci ratio: 4.393353e-03	ci left: 5.008259e-01	ci right 5.030323e-01	k: 396524	n:790000
KS ci ratio: 2.031945e-01	ci left: 4.230530e-04	ci right 5.199116e-04	k: 371	n:790000
ATXN3L   790000 perm   444 sec   (1779 perm/sec)   p_kst 4.696203e-04   p_cons 5.019291e-01   p_joint 1.445570e-03

Joint ci ratio: 1.181111e-01	ci left: 1.293772e-03	ci right 1.457372e-03	k: 1099	n:800000
Cons ci ratio: 4.366794e-03	ci left: 5.007200e-01	ci right 5.029125e-01	k: 401453	n:800000
KS ci ratio: 2.010439e-01	ci left: 4.272589e-04	ci right 5.239180e-04	k: 379	n:800000
ATXN3L   800000 perm   453 sec   (1765 perm/sec)   p_kst 4.737500e-04   p_cons 5.018162e-01   p_joint 1.373750e-03

Joint ci ratio: 1.185445e-01	ci left: 1.268215e-03	ci right 1.429212e-03	k: 1091	n:810000
Cons ci ratio: 4.340507e-03	ci left: 5.006401e-01	ci right 5.028191e-01	k: 406401	n:810000
KS ci ratio: 1.981949e-01	ci left: 4.348858e-04	ci right 5.317077e-04	k: 390	n:810000
ATXN3L   810000 perm   462 sec   (1752 perm/sec)   p_kst 4.814815e-04   p_cons 5.017296e-01   p_joint 1.346914e-03

Joint ci ratio: 1.208963e-01	ci left: 1.203060e-03	ci right 1.359033e-03	k: 1049	n:820000
Cons ci ratio: 4.314688e-03	ci left: 5.005623e-01	ci right 5.027279e-01	k: 411349	n:820000
KS ci ratio: 1.969397e-01	ci left: 4.353783e-04	ci right 5.316223e-04	k: 395	n:820000
ATXN3L   820000 perm   472 sec   (1739 perm/sec)   p_kst 4.817073e-04   p_cons 5.016451e-01   p_joint 1.279268e-03

Joint ci ratio: 1.227850e-01	ci left: 1.151185e-03	ci right 1.302933e-03	k: 1017	n:830000
Cons ci ratio: 4.289190e-03	ci left: 5.005020e-01	ci right 5.026546e-01	k: 416310	n:830000
KS ci ratio: 1.957080e-01	ci left: 4.358607e-04	ci right 5.315370e-04	k: 400	n:830000
ATXN3L   830000 perm   481 sec   (1726 perm/sec)   p_kst 4.819277e-04   p_cons 5.015783e-01   p_joint 1.225301e-03

Joint ci ratio: 1.219492e-01	ci left: 1.153637e-03	ci right 1.304599e-03	k: 1031	n:840000
Cons ci ratio: 4.263490e-03	ci left: 5.005194e-01	ci right 5.026591e-01	k: 421335	n:840000
KS ci ratio: 1.952221e-01	ci left: 4.329363e-04	ci right 5.277066e-04	k: 402	n:840000
ATXN3L   840000 perm   490 sec   (1713 perm/sec)   p_kst 4.785714e-04   p_cons 5.015893e-01   p_joint 1.227381e-03

Joint ci ratio: 1.211302e-01	ci left: 1.156034e-03	ci right 1.306221e-03	k: 1045	n:850000
Cons ci ratio: 4.238764e-03	ci left: 5.004753e-01	ci right 5.026023e-01	k: 426308	n:850000
KS ci ratio: 1.940222e-01	ci left: 4.334387e-04	ci right 5.276669e-04	k: 407	n:850000
ATXN3L   850000 perm   500 sec   (1700 perm/sec)   p_kst 4.788235e-04   p_cons 5.015388e-01   p_joint 1.229412e-03

Joint ci ratio: 1.255337e-01	ci left: 1.061450e-03	ci right 1.204735e-03	k: 973	n:860000
Cons ci ratio: 4.213542e-03	ci left: 5.005415e-01	ci right 5.026561e-01	k: 431375	n:860000
KS ci ratio: 1.928442e-01	ci left: 4.339311e-04	ci right 5.276264e-04	k: 412	n:860000
ATXN3L   860000 perm   510 sec   (1685 perm/sec)   p_kst 4.790698e-04   p_cons 5.015988e-01   p_joint 1.131395e-03

Joint ci ratio: 1.245778e-01	ci left: 1.065952e-03	ci right 1.208668e-03	k: 988	n:870000
Cons ci ratio: 4.189411e-03	ci left: 5.005292e-01	ci right 5.026317e-01	k: 436375	n:870000
KS ci ratio: 1.914583e-01	ci left: 4.355082e-04	ci right 5.287896e-04	k: 418	n:870000
ATXN3L   870000 perm   520 sec   (1673 perm/sec)   p_kst 4.804598e-04   p_cons 5.015805e-01   p_joint 1.135632e-03

Joint ci ratio: 1.240150e-01	ci left: 1.063748e-03	ci right 1.205478e-03	k: 997	n:880000
Cons ci ratio: 4.165793e-03	ci left: 5.005048e-01	ci right 5.025952e-01	k: 441364	n:880000
KS ci ratio: 1.907767e-01	ci left: 4.338052e-04	ci right 5.263527e-04	k: 421	n:880000
ATXN3L   880000 perm   530 sec   (1661 perm/sec)   p_kst 4.784091e-04   p_cons 5.015500e-01   p_joint 1.132955e-03

Joint ci ratio: 1.233372e-01	ci left: 1.063773e-03	ci right 1.204675e-03	k: 1008	n:890000
Cons ci ratio: 4.141304e-03	ci left: 5.006337e-01	ci right 5.027124e-01	k: 446489	n:890000
KS ci ratio: 1.896565e-01	ci left: 4.342814e-04	ci right 5.263238e-04	k: 426	n:890000
ATXN3L   890000 perm   540 sec   (1649 perm/sec)   p_kst 4.786517e-04   p_cons 5.016730e-01   p_joint 1.132584e-03

Joint ci ratio: 1.226102e-01	ci left: 1.064876e-03	ci right 1.205033e-03	k: 1020	n:900000
Cons ci ratio: 4.118414e-03	ci left: 5.006176e-01	ci right 5.026846e-01	k: 451486	n:900000
KS ci ratio: 1.887744e-01	ci left: 4.336900e-04	ci right 5.251305e-04	k: 430	n:900000
ATXN3L   900000 perm   550 sec   (1637 perm/sec)   p_kst 4.777778e-04   p_cons 5.016511e-01   p_joint 1.133333e-03

Joint ci ratio: 1.254731e-01	ci left: 1.004191e-03	ci right 1.139676e-03	k: 974	n:910000
Cons ci ratio: 4.096024e-03	ci left: 5.005864e-01	ci right 5.026421e-01	k: 456469	n:910000
KS ci ratio: 1.870462e-01	ci left: 4.373019e-04	ci right 5.285640e-04	k: 438	n:910000
ATXN3L   910000 perm   560 sec   (1626 perm/sec)   p_kst 4.813187e-04   p_cons 5.016143e-01   p_joint 1.070330e-03

Joint ci ratio: 1.243302e-01	ci left: 1.012230e-03	ci right 1.147464e-03	k: 992	n:920000
Cons ci ratio: 4.073093e-03	ci left: 5.006669e-01	ci right 5.027114e-01	k: 461554	n:920000
KS ci ratio: 1.849510e-01	ci left: 4.429122e-04	ci right 5.341937e-04	k: 448	n:920000
ATXN3L   920000 perm   570 sec   (1615 perm/sec)   p_kst 4.869565e-04   p_cons 5.016891e-01   p_joint 1.078261e-03

Joint ci ratio: 1.245824e-01	ci left: 9.971783e-04	ci right 1.130692e-03	k: 988	n:930000
Cons ci ratio: 4.051587e-03	ci left: 5.006166e-01	ci right 5.026501e-01	k: 466519	n:930000
KS ci ratio: 1.841327e-01	ci left: 4.422521e-04	ci right 5.329492e-04	k: 452	n:930000
ATXN3L   930000 perm   581 sec   (1601 perm/sec)   p_kst 4.860215e-04   p_cons 5.016333e-01   p_joint 1.062366e-03

Joint ci ratio: 1.250906e-01	ci left: 9.783245e-04	ci right 1.109888e-03	k: 980	n:940000
Cons ci ratio: 4.029553e-03	ci left: 5.006749e-01	ci right 5.026975e-01	k: 471585	n:940000
KS ci ratio: 1.823300e-01	ci left: 4.466827e-04	ci right 5.372926e-04	k: 461	n:940000
ATXN3L   940000 perm   592 sec   (1589 perm/sec)   p_kst 4.904255e-04   p_cons 5.016862e-01   p_joint 1.042553e-03

Joint ci ratio: 1.247101e-01	ci left: 9.741447e-04	ci right 1.104718e-03	k: 986	n:950000
Cons ci ratio: 4.008996e-03	ci left: 5.005919e-01	ci right 5.026039e-01	k: 476518	n:950000
KS ci ratio: 1.815459e-01	ci left: 4.459996e-04	ci right 5.360389e-04	k: 465	n:950000
ATXN3L   950000 perm   602 sec   (1578 perm/sec)   p_kst 4.894737e-04   p_cons 5.015979e-01   p_joint 1.037895e-03

Joint ci ratio: 1.241454e-01	ci left: 9.730805e-04	ci right 1.102877e-03	k: 995	n:960000
Cons ci ratio: 3.988061e-03	ci left: 5.005972e-01	ci right 5.025986e-01	k: 481534	n:960000
KS ci ratio: 1.809645e-01	ci left: 4.443369e-04	ci right 5.337219e-04	k: 468	n:960000
ATXN3L   960000 perm   612 sec   (1568 perm/sec)   p_kst 4.875000e-04   p_cons 5.015979e-01   p_joint 1.036458e-03

Joint ci ratio: 1.234655e-01	ci left: 9.740378e-04	ci right 1.103198e-03	k: 1006	n:970000
Cons ci ratio: 3.967786e-03	ci left: 5.005601e-01	ci right 5.025512e-01	k: 486509	n:970000
KS ci ratio: 1.801977e-01	ci left: 4.436934e-04	ci right 5.325295e-04	k: 472	n:970000
ATXN3L   970000 perm   623 sec   (1558 perm/sec)   p_kst 4.865979e-04   p_cons 5.015557e-01   p_joint 1.037113e-03

Joint ci ratio: 1.227362e-01	ci left: 9.759665e-04	ci right 1.104563e-03	k: 1018	n:980000
Cons ci ratio: 3.947785e-03	ci left: 5.005279e-01	ci right 5.025088e-01	k: 491488	n:980000
KS ci ratio: 1.796292e-01	ci left: 4.420893e-04	ci right 5.302945e-04	k: 475	n:980000
ATXN3L   980000 perm   633 sec   (1548 perm/sec)   p_kst 4.846939e-04   p_cons 5.015184e-01   p_joint 1.038776e-03

Joint ci ratio: 1.221979e-01	ci left: 9.749207e-04	ci right 1.102775e-03	k: 1027	n:990000
Cons ci ratio: 3.928163e-03	ci left: 5.004863e-01	ci right 5.024571e-01	k: 496457	n:990000
KS ci ratio: 1.790659e-01	ci left: 4.405180e-04	ci right 5.281043e-04	k: 478	n:990000
ATXN3L   990000 perm   644 sec   (1538 perm/sec)   p_kst 4.828283e-04   p_cons 5.014717e-01   p_joint 1.037374e-03

Joint ci ratio: 1.222581e-01	ci left: 9.642017e-04	ci right 1.090717e-03	k: 1026	n:1000000
Cons ci ratio: 3.908205e-03	ci left: 5.005255e-01	ci right 5.024865e-01	k: 501506	n:1000000
KS ci ratio: 1.786935e-01	ci left: 4.380232e-04	ci right 5.249127e-04	k: 480	n:1000000
ATXN3L   1000000 perm   655 sec   (1528 perm/sec)   p_kst 4.800000e-04   p_cons 5.015060e-01   p_joint 1.026000e-03

Joint ci ratio: 1.217259e-01	ci left: 9.632941e-04	ci right 1.089101e-03	k: 1035	n:1010000
Cons ci ratio: 3.888787e-03	ci left: 5.005333e-01	ci right 5.024845e-01	k: 506524	n:1010000
KS ci ratio: 1.779552e-01	ci left: 4.374699e-04	ci right 5.238526e-04	k: 484	n:1010000
ATXN3L   1010000 perm   665 sec   (1518 perm/sec)   p_kst 4.792079e-04   p_cons 5.015089e-01   p_joint 1.024752e-03

Joint ci ratio: 1.208539e-01	ci left: 9.681099e-04	ci right 1.093575e-03	k: 1050	n:1020000
Cons ci ratio: 3.869867e-03	ci left: 5.005135e-01	ci right 5.024551e-01	k: 511514	n:1020000
KS ci ratio: 1.768645e-01	ci left: 4.388022e-04	ci right 5.248600e-04	k: 490	n:1020000
ATXN3L   1020000 perm   676 sec   (1508 perm/sec)   p_kst 4.803922e-04   p_cons 5.014843e-01   p_joint 1.029412e-03

Joint ci ratio: 1.205106e-01	ci left: 9.643601e-04	ci right 1.088959e-03	k: 1056	n:1030000
Cons ci ratio: 3.850706e-03	ci left: 5.005611e-01	ci right 5.024933e-01	k: 516573	n:1030000
KS ci ratio: 1.765056e-01	ci left: 4.363978e-04	ci right 5.217919e-04	k: 492	n:1030000
ATXN3L   1030000 perm   688 sec   (1498 perm/sec)   p_kst 4.776699e-04   p_cons 5.015272e-01   p_joint 1.025243e-03

Joint ci ratio: 1.200573e-01	ci left: 9.625482e-04	ci right 1.086412e-03	k: 1064	n:1040000
Cons ci ratio: 3.831944e-03	ci left: 5.005924e-01	ci right 5.025153e-01	k: 521616	n:1040000
KS ci ratio: 1.759711e-01	ci left: 4.349590e-04	ci right 5.197865e-04	k: 495	n:1040000
ATXN3L   1040000 perm   699 sec   (1488 perm/sec)   p_kst 4.759615e-04   p_cons 5.015538e-01   p_joint 1.023077e-03

Joint ci ratio: 1.194420e-01	ci left: 9.635435e-04	ci right 1.086855e-03	k: 1075	n:1050000
Cons ci ratio: 3.813511e-03	ci left: 5.006155e-01	ci right 5.025292e-01	k: 526651	n:1050000
KS ci ratio: 1.750908e-01	ci left: 4.353692e-04	ci right 5.198070e-04	k: 500	n:1050000
ATXN3L   1050000 perm   710 sec   (1479 perm/sec)   p_kst 4.761905e-04   p_cons 5.015724e-01   p_joint 1.023810e-03

Joint ci ratio: 1.184549e-01	ci left: 9.709295e-04	ci right 1.094087e-03	k: 1093	n:1060000
Cons ci ratio: 3.794941e-03	ci left: 5.006911e-01	ci right 5.025957e-01	k: 531742	n:1060000
KS ci ratio: 1.742236e-01	ci left: 4.357728e-04	ci right 5.198261e-04	k: 505	n:1060000
ATXN3L   1060000 perm   721 sec   (1469 perm/sec)   p_kst 4.764151e-04   p_cons 5.016434e-01   p_joint 1.031132e-03

Joint ci ratio: 1.180243e-01	ci left: 9.691109e-04	ci right 1.091560e-03	k: 1101	n:1070000
Cons ci ratio: 3.777275e-03	ci left: 5.006811e-01	ci right 5.025768e-01	k: 536743	n:1070000
KS ci ratio: 1.733691e-01	ci left: 4.361698e-04	ci right 5.198439e-04	k: 510	n:1070000
ATXN3L   1070000 perm   733 sec   (1461 perm/sec)   p_kst 4.766355e-04   p_cons 5.016290e-01   p_joint 1.028972e-03

Joint ci ratio: 1.174924e-01	ci left: 9.691242e-04	ci right 1.090985e-03	k: 1111	n:1080000
Cons ci ratio: 3.759903e-03	ci left: 5.006649e-01	ci right 5.025518e-01	k: 541737	n:1080000
KS ci ratio: 1.721935e-01	ci left: 4.383324e-04	ci right 5.217920e-04	k: 517	n:1080000
ATXN3L   1080000 perm   744 sec   (1451 perm/sec)   p_kst 4.787037e-04   p_cons 5.016083e-01   p_joint 1.028704e-03

Joint ci ratio: 1.172294e-01	ci left: 9.646855e-04	ci right 1.085698e-03	k: 1116	n:1090000
Cons ci ratio: 3.742554e-03	ci left: 5.006774e-01	ci right 5.025556e-01	k: 546762	n:1090000
KS ci ratio: 1.718623e-01	ci left: 4.360668e-04	ci right 5.189188e-04	k: 519	n:1090000
ATXN3L   1090000 perm   756 sec   (1442 perm/sec)   p_kst 4.761468e-04   p_cons 5.016165e-01   p_joint 1.023853e-03

Joint ci ratio: 1.169682e-01	ci left: 9.603278e-04	ci right 1.080506e-03	k: 1121	n:1100000
Cons ci ratio: 3.725404e-03	ci left: 5.006952e-01	ci right 5.025648e-01	k: 551793	n:1100000
KS ci ratio: 1.707169e-01	ci left: 4.381934e-04	ci right 5.208374e-04	k: 526	n:1100000
ATXN3L   1100000 perm   767 sec   (1433 perm/sec)   p_kst 4.781818e-04   p_cons 5.016300e-01   p_joint 1.019091e-03

Joint ci ratio: 1.177593e-01	ci left: 9.385588e-04	ci right 1.056863e-03	k: 1106	n:1110000
Cons ci ratio: 3.708620e-03	ci left: 5.006946e-01	ci right 5.025558e-01	k: 556804	n:1110000
KS ci ratio: 1.699127e-01	ci left: 4.385582e-04	ci right 5.208415e-04	k: 531	n:1110000
ATXN3L   1110000 perm   779 sec   (1425 perm/sec)   p_kst 4.783784e-04   p_cons 5.016252e-01   p_joint 9.963964e-04

Joint ci ratio: 1.178132e-01	ci left: 9.293120e-04	ci right 1.046508e-03	k: 1105	n:1120000
Cons ci ratio: 3.691402e-03	ci left: 5.007834e-01	ci right 5.026363e-01	k: 561915	n:1120000
KS ci ratio: 1.689625e-01	ci left: 4.397725e-04	ci right 5.217752e-04	k: 537	n:1120000
ATXN3L   1120000 perm   791 sec   (1416 perm/sec)   p_kst 4.794643e-04   p_cons 5.017098e-01   p_joint 9.866071e-04

Joint ci ratio: 1.174951e-01	ci left: 9.262414e-04	ci right 1.042712e-03	k: 1111	n:1130000
Cons ci ratio: 3.675390e-03	ci left: 5.007387e-01	ci right 5.025834e-01	k: 566877	n:1130000
KS ci ratio: 1.680281e-01	ci left: 4.409666e-04	ci right 5.226912e-04	k: 543	n:1130000
ATXN3L   1130000 perm   803 sec   (1408 perm/sec)   p_kst 4.805310e-04   p_cons 5.016611e-01   p_joint 9.831858e-04

Joint ci ratio: 1.169182e-01	ci left: 9.274827e-04	ci right 1.043498e-03	k: 1122	n:1140000
Cons ci ratio: 3.659656e-03	ci left: 5.006852e-01	ci right 5.025218e-01	k: 571828	n:1140000
KS ci ratio: 1.668058e-01	ci left: 4.438220e-04	ci right 5.254174e-04	k: 551	n:1140000
ATXN3L   1140000 perm   815 sec   (1399 perm/sec)   p_kst 4.833333e-04   p_cons 5.016035e-01   p_joint 9.842105e-04

Joint ci ratio: 1.180821e-01	ci left: 9.008487e-04	ci right 1.014732e-03	k: 1100	n:1150000
Cons ci ratio: 3.643678e-03	ci left: 5.006936e-01	ci right 5.025221e-01	k: 576849	n:1150000
KS ci ratio: 1.668062e-01	ci left: 4.399626e-04	ci right 5.208486e-04	k: 551	n:1150000
ATXN3L   1150000 perm   826 sec   (1391 perm/sec)   p_kst 4.791304e-04   p_cons 5.016078e-01   p_joint 9.565217e-04

Joint ci ratio: 1.174966e-01	ci left: 9.022862e-04	ci right 1.015747e-03	k: 1111	n:1160000
Cons ci ratio: 3.628127e-03	ci left: 5.006716e-01	ci right 5.024922e-01	k: 581835	n:1160000
KS ci ratio: 1.663549e-01	ci left: 4.386482e-04	ci right 5.190525e-04	k: 554	n:1160000
ATXN3L   1160000 perm   838 sec   (1384 perm/sec)   p_kst 4.775862e-04   p_cons 5.015819e-01   p_joint 9.577586e-04

Joint ci ratio: 1.170240e-01	ci left: 9.020410e-04	ci right 1.014983e-03	k: 1120	n:1170000
Cons ci ratio: 3.612532e-03	ci left: 5.006833e-01	ci right 5.024962e-01	k: 586860	n:1170000
KS ci ratio: 1.657587e-01	ci left: 4.381758e-04	ci right 5.181770e-04	k: 558	n:1170000
ATXN3L   1170000 perm   851 sec   (1375 perm/sec)   p_kst 4.769231e-04   p_cons 5.015897e-01   p_joint 9.572650e-04

Joint ci ratio: 1.168680e-01	ci left: 8.968645e-04	ci right 1.008998e-03	k: 1123	n:1180000
Cons ci ratio: 3.596600e-03	ci left: 5.007695e-01	ci right 5.025746e-01	k: 591973	n:1180000
KS ci ratio: 1.651688e-01	ci left: 4.377119e-04	ci right 5.173157e-04	k: 562	n:1180000
ATXN3L   1180000 perm   863 sec   (1367 perm/sec)   p_kst 4.762712e-04   p_cons 5.016720e-01   p_joint 9.516949e-04

Joint ci ratio: 1.166092e-01	ci left: 8.934067e-04	ci right 1.004844e-03	k: 1128	n:1190000
Cons ci ratio: 3.581720e-03	ci left: 5.007365e-01	ci right 5.025341e-01	k: 596946	n:1190000
KS ci ratio: 1.645852e-01	ci left: 4.372563e-04	ci right 5.164684e-04	k: 566	n:1190000
ATXN3L   1190000 perm   875 sec   (1359 perm/sec)   p_kst 4.756303e-04   p_cons 5.016353e-01   p_joint 9.478992e-04

Joint ci ratio: 1.158926e-01	ci left: 8.972892e-04	ci right 1.008476e-03	k: 1142	n:1200000
Cons ci ratio: 3.566892e-03	ci left: 5.007225e-01	ci right 5.025125e-01	k: 601941	n:1200000
KS ci ratio: 1.628703e-01	ci left: 4.432029e-04	ci right 5.225738e-04	k: 578	n:1200000
ATXN3L   1200000 perm   889 sec   (1350 perm/sec)   p_kst 4.816667e-04   p_cons 5.016175e-01   p_joint 9.516667e-04

Joint ci ratio: 1.153889e-01	ci left: 8.978990e-04	ci right 1.008644e-03	k: 1152	n:1210000
Cons ci ratio: 3.551783e-03	ci left: 5.007740e-01	ci right 5.025566e-01	k: 607015	n:1210000
KS ci ratio: 1.618944e-01	ci left: 4.450901e-04	ci right 5.242750e-04	k: 585	n:1210000
ATXN3L   1210000 perm   901 sec   (1342 perm/sec)   p_kst 4.834711e-04   p_cons 5.016653e-01   p_joint 9.520661e-04

Joint ci ratio: 1.150404e-01	ci left: 8.961115e-04	ci right 1.006280e-03	k: 1159	n:1220000
Cons ci ratio: 3.537194e-03	ci left: 5.007779e-01	ci right 5.025532e-01	k: 612032	n:1220000
KS ci ratio: 1.612081e-01	ci left: 4.453745e-04	ci right 5.242415e-04	k: 590	n:1220000
ATXN3L   1220000 perm   914 sec   (1335 perm/sec)   p_kst 4.836066e-04   p_cons 5.016656e-01   p_joint 9.500000e-04

Joint ci ratio: 1.162508e-01	ci left: 8.698775e-04	ci right 9.780232e-04	k: 1135	n:1230000
Cons ci ratio: 3.522721e-03	ci left: 5.007908e-01	ci right 5.025588e-01	k: 617060	n:1230000
KS ci ratio: 1.602617e-01	ci left: 4.472158e-04	ci right 5.258991e-04	k: 597	n:1230000
ATXN3L   1230000 perm   927 sec   (1327 perm/sec)   p_kst 4.853659e-04   p_cons 5.016748e-01   p_joint 9.227642e-04

Joint ci ratio: 1.160979e-01	ci left: 8.652113e-04	ci right 9.726257e-04	k: 1138	n:1240000
Cons ci ratio: 3.508634e-03	ci left: 5.007736e-01	ci right 5.025345e-01	k: 622051	n:1240000
KS ci ratio: 1.593317e-01	ci left: 4.490287e-04	ci right 5.275287e-04	k: 604	n:1240000
ATXN3L   1240000 perm   940 sec   (1320 perm/sec)   p_kst 4.870968e-04   p_cons 5.016540e-01   p_joint 9.177419e-04

Joint ci ratio: 1.016634e-01	ci left: 1.127592e-03	ci right 1.249138e-03	k: 1484	n:1250000
Cons ci ratio: 3.494289e-03	ci left: 5.008175e-01	ci right 5.025713e-01	k: 627118	n:1250000
KS ci ratio: 1.584178e-01	ci left: 4.508138e-04	ci right 5.291309e-04	k: 611	n:1250000
ATXN3L   1250000 perm   952 sec   (1313 perm/sec)   p_kst 4.888000e-04   p_cons 5.016944e-01   p_joint 1.187200e-03

Joint ci ratio: 1.010862e-01	ci left: 1.131793e-03	ci right 1.253058e-03	k: 1501	n:1260000
Cons ci ratio: 3.480323e-03	ci left: 5.008313e-01	ci right 5.025782e-01	k: 632148	n:1260000
KS ci ratio: 1.576468e-01	ci left: 4.518095e-04	ci right 5.298815e-04	k: 617	n:1260000
ATXN3L   1260000 perm   965 sec   (1305 perm/sec)   p_kst 4.896825e-04   p_cons 5.017048e-01   p_joint 1.191270e-03

Joint ci ratio: 1.025672e-01	ci left: 1.089884e-03	ci right 1.208473e-03	k: 1458	n:1270000
Cons ci ratio: 3.466589e-03	ci left: 5.008355e-01	ci right 5.025755e-01	k: 637166	n:1270000
KS ci ratio: 1.571391e-01	ci left: 4.512775e-04	ci right 5.289827e-04	k: 621	n:1270000
ATXN3L   1270000 perm   978 sec   (1298 perm/sec)   p_kst 4.889764e-04   p_cons 5.017055e-01   p_joint 1.148031e-03

Joint ci ratio: 1.022176e-01	ci left: 1.088982e-03	ci right 1.207044e-03	k: 1468	n:1280000
Cons ci ratio: 3.452913e-03	ci left: 5.008545e-01	ci right 5.025877e-01	k: 642203	n:1280000
KS ci ratio: 1.566363e-01	ci left: 4.507542e-04	ci right 5.280977e-04	k: 625	n:1280000
ATXN3L   1280000 perm   992 sec   (1291 perm/sec)   p_kst 4.882812e-04   p_cons 5.017211e-01   p_joint 1.146875e-03

Joint ci ratio: 1.018715e-01	ci left: 1.088094e-03	ci right 1.205637e-03	k: 1478	n:1290000
Cons ci ratio: 3.439041e-03	ci left: 5.009252e-01	ci right 5.026516e-01	k: 647307	n:1290000
KS ci ratio: 1.560145e-01	ci left: 4.509844e-04	ci right 5.280313e-04	k: 630	n:1290000
ATXN3L   1290000 perm   1005 sec   (1284 perm/sec)   p_kst 4.883721e-04   p_cons 5.017884e-01   p_joint 1.145736e-03

Joint ci ratio: 1.015289e-01	ci left: 1.087221e-03	ci right 1.204251e-03	k: 1488	n:1300000
Cons ci ratio: 3.425493e-03	ci left: 5.009717e-01	ci right 5.026914e-01	k: 652381	n:1300000
KS ci ratio: 1.555224e-01	ci left: 4.504722e-04	ci right 5.271663e-04	k: 634	n:1300000
ATXN3L   1300000 perm   1018 sec   (1277 perm/sec)   p_kst 4.876923e-04   p_cons 5.018315e-01   p_joint 1.144615e-03

Joint ci ratio: 1.053526e-01	ci left: 1.000095e-03	ci right 1.112053e-03	k: 1382	n:1310000
Cons ci ratio: 3.412322e-03	ci left: 5.009854e-01	ci right 5.026986e-01	k: 657413	n:1310000
KS ci ratio: 1.551564e-01	ci left: 4.492346e-04	ci right 5.255212e-04	k: 637	n:1310000
ATXN3L   1310000 perm   1032 sec   (1270 perm/sec)   p_kst 4.862595e-04   p_cons 5.018420e-01   p_joint 1.054962e-03

Joint ci ratio: 1.049361e-01	ci left: 1.000633e-03	ci right 1.112181e-03	k: 1393	n:1320000
Cons ci ratio: 3.399183e-03	ci left: 5.010164e-01	ci right 5.027230e-01	k: 662468	n:1320000
KS ci ratio: 1.546724e-01	ci left: 4.487441e-04	ci right 5.246877e-04	k: 641	n:1320000
ATXN3L   1320000 perm   1045 sec   (1263 perm/sec)   p_kst 4.856061e-04   p_cons 5.018697e-01   p_joint 1.055303e-03

Joint ci ratio: 1.045245e-01	ci left: 1.001164e-03	ci right 1.112306e-03	k: 1404	n:1330000
Cons ci ratio: 3.386053e-03	ci left: 5.010679e-01	ci right 5.027682e-01	k: 667551	n:1330000
KS ci ratio: 1.539546e-01	ci left: 4.497072e-04	ci right 5.254280e-04	k: 647	n:1330000
ATXN3L   1330000 perm   1058 sec   (1257 perm/sec)   p_kst 4.864662e-04   p_cons 5.019180e-01   p_joint 1.055639e-03

Joint ci ratio: 1.043393e-01	ci left: 9.973261e-04	ci right 1.107834e-03	k: 1409	n:1340000
Cons ci ratio: 3.372877e-03	ci left: 5.011478e-01	ci right 5.028417e-01	k: 672673	n:1340000
KS ci ratio: 1.537177e-01	ci left: 4.477862e-04	ci right 5.230569e-04	k: 649	n:1340000
ATXN3L   1340000 perm   1072 sec   (1250 perm/sec)   p_kst 4.843284e-04   p_cons 5.019948e-01   p_joint 1.051493e-03

Joint ci ratio: 1.039712e-01	ci left: 9.971529e-04	ci right 1.107228e-03	k: 1419	n:1350000
Cons ci ratio: 3.360630e-03	ci left: 5.011110e-01	ci right 5.027986e-01	k: 677639	n:1350000
KS ci ratio: 1.531299e-01	ci left: 4.480308e-04	ci right 5.230281e-04	k: 654	n:1350000
ATXN3L   1350000 perm   1086 sec   (1243 perm/sec)   p_kst 4.844444e-04   p_cons 5.019548e-01   p_joint 1.051111e-03

Joint ci ratio: 1.035346e-01	ci left: 9.984155e-04	ci right 1.108139e-03	k: 1431	n:1360000
Cons ci ratio: 3.348654e-03	ci left: 5.010542e-01	ci right 5.027355e-01	k: 682577	n:1360000
KS ci ratio: 1.524332e-01	ci left: 4.489796e-04	ci right 5.237626e-04	k: 660	n:1360000
ATXN3L   1360000 perm   1100 sec   (1236 perm/sec)   p_kst 4.852941e-04   p_cons 5.018949e-01   p_joint 1.052206e-03

Joint ci ratio: 1.033186e-01	ci left: 9.953940e-04	ci right 1.104543e-03	k: 1437	n:1370000
Cons ci ratio: 3.336215e-03	ci left: 5.010865e-01	ci right 5.027617e-01	k: 687636	n:1370000
KS ci ratio: 1.518599e-01	ci left: 4.492130e-04	ci right 5.237280e-04	k: 665	n:1370000
ATXN3L   1370000 perm   1114 sec   (1230 perm/sec)   p_kst 4.854015e-04   p_cons 5.019241e-01   p_joint 1.048905e-03

Joint ci ratio: 1.031039e-01	ci left: 9.924165e-04	ci right 1.100999e-03	k: 1443	n:1380000
Cons ci ratio: 3.324126e-03	ci left: 5.010864e-01	ci right 5.027556e-01	k: 692651	n:1380000
KS ci ratio: 1.515192e-01	ci left: 4.480493e-04	ci right 5.221893e-04	k: 668	n:1380000
ATXN3L   1380000 perm   1129 sec   (1222 perm/sec)   p_kst 4.840580e-04   p_cons 5.019210e-01   p_joint 1.045652e-03

Joint ci ratio: 1.026781e-01	ci left: 9.936878e-04	ci right 1.101934e-03	k: 1455	n:1390000
Cons ci ratio: 3.312291e-03	ci left: 5.010677e-01	ci right 5.027308e-01	k: 697640	n:1390000
KS ci ratio: 1.512933e-01	ci left: 4.462102e-04	ci right 5.199259e-04	k: 670	n:1390000
ATXN3L   1390000 perm   1143 sec   (1216 perm/sec)   p_kst 4.820144e-04   p_cons 5.018993e-01   p_joint 1.046763e-03

Joint ci ratio: 1.023273e-01	ci left: 9.935498e-04	ci right 1.101389e-03	k: 1465	n:1400000
Cons ci ratio: 3.300714e-03	ci left: 5.010293e-01	ci right 5.026864e-01	k: 702601	n:1400000
KS ci ratio: 1.507328e-01	ci left: 4.464595e-04	ci right 5.199184e-04	k: 675	n:1400000
ATXN3L   1400000 perm   1157 sec   (1210 perm/sec)   p_kst 4.821429e-04   p_cons 5.018579e-01   p_joint 1.046429e-03

Joint ci ratio: 1.023976e-01	ci left: 9.851210e-04	ci right 1.092123e-03	k: 1463	n:1410000
Cons ci ratio: 3.289299e-03	ci left: 5.009850e-01	ci right 5.026363e-01	k: 707553	n:1410000
KS ci ratio: 1.497391e-01	ci left: 4.494362e-04	ci right 5.228537e-04	k: 684	n:1410000
ATXN3L   1410000 perm   1172 sec   (1203 perm/sec)   p_kst 4.851064e-04   p_cons 5.018106e-01   p_joint 1.037589e-03

Joint ci ratio: 1.020150e-01	ci left: 9.857320e-04	ci right 1.092376e-03	k: 1474	n:1420000
Cons ci ratio: 3.277688e-03	ci left: 5.009892e-01	ci right 5.026347e-01	k: 712573	n:1420000
KS ci ratio: 1.493038e-01	ci left: 4.489826e-04	ci right 5.220939e-04	k: 688	n:1420000
ATXN3L   1420000 perm   1187 sec   (1196 perm/sec)   p_kst 4.845070e-04   p_cons 5.018120e-01   p_joint 1.038028e-03

Joint ci ratio: 1.016025e-01	ci left: 9.870167e-04	ci right 1.093342e-03	k: 1486	n:1430000
Cons ci ratio: 3.266368e-03	ci left: 5.009676e-01	ci right 5.026073e-01	k: 717556	n:1430000
KS ci ratio: 1.484443e-01	ci left: 4.512289e-04	ci right 5.242455e-04	k: 696	n:1430000
ATXN3L   1430000 perm   1202 sec   (1190 perm/sec)   p_kst 4.867133e-04   p_cons 5.017874e-01   p_joint 1.039161e-03

Joint ci ratio: 1.013643e-01	ci left: 9.849001e-04	ci right 1.090734e-03	k: 1493	n:1440000
Cons ci ratio: 3.255010e-03	ci left: 5.009698e-01	ci right 5.026038e-01	k: 722573	n:1440000
KS ci ratio: 1.479147e-01	ci left: 4.514389e-04	ci right 5.242057e-04	k: 701	n:1440000
ATXN3L   1440000 perm   1217 sec   (1183 perm/sec)   p_kst 4.868056e-04   p_cons 5.017868e-01   p_joint 1.036806e-03

Joint ci ratio: 1.032497e-01	ci left: 9.418180e-04	ci right 1.045019e-03	k: 1439	n:1450000
Cons ci ratio: 3.244026e-03	ci left: 5.009327e-01	ci right 5.025611e-01	k: 727533	n:1450000
KS ci ratio: 1.474952e-01	ci left: 4.509822e-04	ci right 5.234510e-04	k: 705	n:1450000
ATXN3L   1450000 perm   1232 sec   (1177 perm/sec)   p_kst 4.862069e-04   p_cons 5.017469e-01   p_joint 9.924138e-04

Joint ci ratio: 1.110047e-01	ci left: 8.060429e-04	ci right 9.014345e-04	k: 1245	n:1460000
Cons ci ratio: 3.233081e-03	ci left: 5.009071e-01	ci right 5.025299e-01	k: 732509	n:1460000
KS ci ratio: 1.470792e-01	ci left: 4.505320e-04	ci right 5.227064e-04	k: 709	n:1460000
ATXN3L   1460000 perm   1246 sec   (1172 perm/sec)   p_kst 4.856164e-04   p_cons 5.017185e-01   p_joint 8.527397e-04

Joint ci ratio: 1.107828e-01	ci left: 8.038666e-04	ci right 8.987980e-04	k: 1250	n:1470000
Cons ci ratio: 3.221553e-03	ci left: 5.009893e-01	ci right 5.026066e-01	k: 737643	n:1470000
KS ci ratio: 1.468726e-01	ci left: 4.487777e-04	ci right 5.205611e-04	k: 711	n:1470000
ATXN3L   1470000 perm   1261 sec   (1166 perm/sec)   p_kst 4.836735e-04   p_cons 5.017980e-01   p_joint 8.503401e-04

Joint ci ratio: 1.113638e-01	ci left: 7.898950e-04	ci right 8.836977e-04	k: 1237	n:1480000
Cons ci ratio: 3.210716e-03	ci left: 5.009820e-01	ci right 5.025937e-01	k: 742646	n:1480000
KS ci ratio: 1.465642e-01	ci left: 4.476980e-04	ci right 5.191452e-04	k: 714	n:1480000
ATXN3L   1480000 perm   1276 sec   (1160 perm/sec)   p_kst 4.824324e-04   p_cons 5.017878e-01   p_joint 8.358108e-04

Joint ci ratio: 1.110503e-01	ci left: 7.891609e-04	ci right 8.825955e-04	k: 1244	n:1490000
Cons ci ratio: 3.200056e-03	ci left: 5.009639e-01	ci right 5.025703e-01	k: 747633	n:1490000
KS ci ratio: 1.460544e-01	ci left: 4.479262e-04	ci right 5.191395e-04	k: 719	n:1490000
ATXN3L   1490000 perm   1291 sec   (1155 perm/sec)   p_kst 4.825503e-04   p_cons 5.017671e-01   p_joint 8.348993e-04

Joint ci ratio: 1.109169e-01	ci left: 7.858443e-04	ci right 8.787671e-04	k: 1247	n:1500000
Cons ci ratio: 3.189447e-03	ci left: 5.009549e-01	ci right 5.025558e-01	k: 752633	n:1500000
KS ci ratio: 1.455499e-01	ci left: 4.481517e-04	ci right 5.191334e-04	k: 724	n:1500000
ATXN3L   1500000 perm   1305 sec   (1149 perm/sec)   p_kst 4.826667e-04   p_cons 5.017553e-01   p_joint 8.313333e-04

Joint ci ratio: 1.116811e-01	ci left: 7.696948e-04	ci right 8.613763e-04	k: 1230	n:1510000
Cons ci ratio: 3.055443e-03	ci left: 5.207453e-01	ci right 5.223394e-01	k: 787529	n:1510000
KS ci ratio: 1.454498e-01	ci left: 4.458219e-04	ci right 5.163818e-04	k: 725	n:1510000
ATXN3L   1510000 perm   1321 sec   (1143 perm/sec)   p_kst 4.801325e-04   p_cons 5.215424e-01   p_joint 8.145695e-04

Joint ci ratio: 1.111406e-01	ci left: 7.723058e-04	ci right 8.638240e-04	k: 1242	n:1520000
Cons ci ratio: 3.045465e-03	ci left: 5.207331e-01	ci right 5.223221e-01	k: 792722	n:1520000
KS ci ratio: 1.446549e-01	ci left: 4.479611e-04	ci right 5.184386e-04	k: 733	n:1520000
ATXN3L   1520000 perm   1336 sec   (1138 perm/sec)   p_kst 4.822368e-04   p_cons 5.215276e-01   p_joint 8.171053e-04

Joint ci ratio: 1.109178e-01	ci left: 7.704352e-04	ci right 8.615368e-04	k: 1247	n:1530000
Cons ci ratio: 3.035438e-03	ci left: 5.207454e-01	ci right 5.223291e-01	k: 797952	n:1530000
KS ci ratio: 1.440672e-01	ci left: 4.488132e-04	ci right 5.191132e-04	k: 739	n:1530000
ATXN3L   1530000 perm   1351 sec   (1132 perm/sec)   p_kst 4.830065e-04   p_cons 5.215373e-01   p_joint 8.150327e-04

Joint ci ratio: 1.105640e-01	ci left: 7.704833e-04	ci right 8.612810e-04	k: 1255	n:1540000
Cons ci ratio: 3.025509e-03	ci left: 5.207574e-01	ci right 5.223360e-01	k: 803182	n:1540000
KS ci ratio: 1.435829e-01	ci left: 4.490287e-04	ci right 5.191058e-04	k: 744	n:1540000
ATXN3L   1540000 perm   1367 sec   (1127 perm/sec)   p_kst 4.831169e-04   p_cons 5.215468e-01   p_joint 8.149351e-04

Joint ci ratio: 1.102136e-01	ci left: 7.705312e-04	ci right 8.610281e-04	k: 1263	n:1550000
Cons ci ratio: 3.015685e-03	ci left: 5.207681e-01	ci right 5.223415e-01	k: 808410	n:1550000
KS ci ratio: 1.431035e-01	ci left: 4.492419e-04	ci right 5.190982e-04	k: 749	n:1550000
ATXN3L   1550000 perm   1382 sec   (1121 perm/sec)   p_kst 4.832258e-04   p_cons 5.215548e-01   p_joint 8.148387e-04

Joint ci ratio: 1.097371e-01	ci left: 7.724493e-04	ci right 8.627538e-04	k: 1274	n:1560000
Cons ci ratio: 3.006071e-03	ci left: 5.207593e-01	ci right 5.223278e-01	k: 813608	n:1560000
KS ci ratio: 1.424402e-01	ci left: 4.506891e-04	ci right 5.204180e-04	k: 756	n:1560000
ATXN3L   1560000 perm   1398 sec   (1116 perm/sec)   p_kst 4.846154e-04   p_cons 5.215436e-01   p_joint 8.166667e-04

Joint ci ratio: 1.095226e-01	ci left: 7.706266e-04	ci right 8.605306e-04	k: 1279	n:1570000
Cons ci ratio: 2.996729e-03	ci left: 5.207208e-01	ci right 5.222842e-01	k: 818759	n:1570000
KS ci ratio: 1.420654e-01	ci left: 4.502755e-04	ci right 5.197416e-04	k: 760	n:1570000
ATXN3L   1570000 perm   1414 sec   (1110 perm/sec)   p_kst 4.840764e-04   p_cons 5.215025e-01   p_joint 8.146497e-04

Joint ci ratio: 1.090127e-01	ci left: 7.731366e-04	ci right 8.628866e-04	k: 1291	n:1580000
Cons ci ratio: 2.987231e-03	ci left: 5.207233e-01	ci right 5.222817e-01	k: 823974	n:1580000
KS ci ratio: 1.413244e-01	ci left: 4.523095e-04	ci right 5.216947e-04	k: 768	n:1580000
ATXN3L   1580000 perm   1430 sec   (1105 perm/sec)   p_kst 4.860759e-04   p_cons 5.215025e-01   p_joint 8.170886e-04

Joint ci ratio: 1.086767e-01	ci left: 7.731686e-04	ci right 8.626280e-04	k: 1299	n:1590000
Cons ci ratio: 2.977785e-03	ci left: 5.207320e-01	ci right 5.222855e-01	k: 829199	n:1590000
KS ci ratio: 1.409583e-01	ci left: 4.518917e-04	ci right 5.210181e-04	k: 772	n:1590000
ATXN3L   1590000 perm   1445 sec   (1100 perm/sec)   p_kst 4.855346e-04   p_cons 5.215088e-01   p_joint 8.169811e-04

Joint ci ratio: 1.093952e-01	ci left: 7.580007e-04	ci right 8.463223e-04	k: 1282	n:1600000
Cons ci ratio: 2.968383e-03	ci left: 5.207481e-01	ci right 5.222968e-01	k: 834436	n:1600000
KS ci ratio: 1.405046e-01	ci left: 4.520823e-04	ci right 5.209967e-04	k: 777	n:1600000
ATXN3L   1600000 perm   1461 sec   (1095 perm/sec)   p_kst 4.856250e-04   p_cons 5.215225e-01   p_joint 8.012500e-04

Joint ci ratio: 1.090981e-01	ci left: 7.575217e-04	ci right 8.455322e-04	k: 1289	n:1610000
Cons ci ratio: 2.959202e-03	ci left: 5.207417e-01	ci right 5.222856e-01	k: 839637	n:1610000
KS ci ratio: 1.405048e-01	ci left: 4.492743e-04	ci right 5.177608e-04	k: 777	n:1610000
ATXN3L   1610000 perm   1477 sec   (1090 perm/sec)   p_kst 4.826087e-04   p_cons 5.215137e-01   p_joint 8.006211e-04

Joint ci ratio: 1.086776e-01	ci left: 7.588504e-04	ci right 8.466538e-04	k: 1299	n:1620000
Cons ci ratio: 2.949745e-03	ci left: 5.207965e-01	ci right 5.223355e-01	k: 844937	n:1620000
KS ci ratio: 1.399661e-01	ci left: 4.500748e-04	ci right 5.183983e-04	k: 783	n:1620000
ATXN3L   1620000 perm   1493 sec   (1085 perm/sec)   p_kst 4.833333e-04   p_cons 5.215660e-01   p_joint 8.018519e-04

Joint ci ratio: 1.111437e-01	ci left: 7.201859e-04	ci right 8.055304e-04	k: 1242	n:1630000
Cons ci ratio: 2.940649e-03	ci left: 5.208046e-01	ci right 5.223389e-01	k: 850162	n:1630000
KS ci ratio: 1.391694e-01	ci left: 4.526423e-04	ci right 5.209320e-04	k: 792	n:1630000
ATXN3L   1630000 perm   1511 sec   (1079 perm/sec)   p_kst 4.858896e-04   p_cons 5.215718e-01   p_joint 7.619632e-04

Joint ci ratio: 1.108320e-01	ci left: 7.199443e-04	ci right 8.050053e-04	k: 1249	n:1640000
Cons ci ratio: 2.931598e-03	ci left: 5.208193e-01	ci right 5.223489e-01	k: 855398	n:1640000
KS ci ratio: 1.389943e-01	ci left: 4.510593e-04	ci right 5.190175e-04	k: 794	n:1640000
ATXN3L   1640000 perm   1529 sec   (1073 perm/sec)   p_kst 4.841463e-04   p_cons 5.215841e-01   p_joint 7.615854e-04

Joint ci ratio: 1.105230e-01	ci left: 7.197060e-04	ci right 8.044863e-04	k: 1256	n:1650000
Cons ci ratio: 2.922420e-03	ci left: 5.208696e-01	ci right 5.223946e-01	k: 860693	n:1650000
KS ci ratio: 1.385593e-01	ci left: 4.512507e-04	ci right 5.190074e-04	k: 799	n:1650000
ATXN3L   1650000 perm   1547 sec   (1067 perm/sec)   p_kst 4.842424e-04   p_cons 5.216321e-01   p_joint 7.612121e-04

Joint ci ratio: 1.103040e-01	ci left: 7.182993e-04	ci right 8.027353e-04	k: 1261	n:1660000
Cons ci ratio: 2.914080e-03	ci left: 5.207904e-01	ci right 5.223108e-01	k: 865774	n:1660000
KS ci ratio: 1.382142e-01	ci left: 4.508586e-04	ci right 5.183739e-04	k: 803	n:1660000
ATXN3L   1660000 perm   1564 sec   (1061 perm/sec)   p_kst 4.837349e-04   p_cons 5.215506e-01   p_joint 7.596386e-04

Joint ci ratio: 1.099993e-01	ci left: 7.180742e-04	ci right 8.022355e-04	k: 1268	n:1670000
Cons ci ratio: 2.905786e-03	ci left: 5.207163e-01	ci right 5.222321e-01	k: 870862	n:1670000
KS ci ratio: 1.378717e-01	ci left: 4.504713e-04	ci right 5.177477e-04	k: 807	n:1670000
ATXN3L   1670000 perm   1582 sec   (1056 perm/sec)   p_kst 4.832335e-04   p_cons 5.214743e-01   p_joint 7.592814e-04

Joint ci ratio: 1.098265e-01	ci left: 7.161154e-04	ci right 7.999067e-04	k: 1272	n:1680000
Cons ci ratio: 2.897318e-03	ci left: 5.206854e-01	ci right 5.221967e-01	k: 876021	n:1680000
KS ci ratio: 1.377015e-01	ci left: 4.489393e-04	ci right 5.158974e-04	k: 809	n:1680000
ATXN3L   1680000 perm   1598 sec   (1051 perm/sec)   p_kst 4.815476e-04   p_cons 5.214411e-01   p_joint 7.571429e-04

Joint ci ratio: 1.096115e-01	ci left: 7.147554e-04	ci right 7.982133e-04	k: 1277	n:1690000
Cons ci ratio: 2.888875e-03	ci left: 5.206631e-01	ci right 5.221700e-01	k: 881194	n:1690000
KS ci ratio: 1.373628e-01	ci left: 4.485683e-04	ci right 5.152930e-04	k: 813	n:1690000
ATXN3L   1690000 perm   1615 sec   (1046 perm/sec)   p_kst 4.810651e-04   p_cons 5.214166e-01   p_joint 7.556213e-04

Joint ci ratio: 1.092700e-01	ci left: 7.151281e-04	ci right 7.983526e-04	k: 1285	n:1700000
Cons ci ratio: 2.880251e-03	ci left: 5.206852e-01	ci right 5.221876e-01	k: 886442	n:1700000
KS ci ratio: 1.370266e-01	ci left: 4.482018e-04	ci right 5.146956e-04	k: 817	n:1700000
ATXN3L   1700000 perm   1634 sec   (1040 perm/sec)   p_kst 4.805882e-04   p_cons 5.214365e-01   p_joint 7.558824e-04

Joint ci ratio: 1.090161e-01	ci left: 7.143590e-04	ci right 7.972884e-04	k: 1291	n:1710000
Cons ci ratio: 2.871889e-03	ci left: 5.206749e-01	ci right 5.221730e-01	k: 891635	n:1710000
KS ci ratio: 1.366928e-01	ci left: 4.478399e-04	ci right 5.141049e-04	k: 821	n:1710000
ATXN3L   1710000 perm   1651 sec   (1036 perm/sec)   p_kst 4.801170e-04   p_cons 5.214240e-01   p_joint 7.549708e-04

Joint ci ratio: 1.091432e-01	ci left: 7.085090e-04	ci right 7.908614e-04	k: 1288	n:1720000
Cons ci ratio: 2.863496e-03	ci left: 5.206828e-01	ci right 5.221764e-01	k: 896859	n:1720000
KS ci ratio: 1.363615e-01	ci left: 4.474823e-04	ci right 5.135209e-04	k: 825	n:1720000
ATXN3L   1720000 perm   1668 sec   (1031 perm/sec)   p_kst 4.796512e-04   p_cons 5.214297e-01   p_joint 7.488372e-04

Joint ci ratio: 1.090166e-01	ci left: 7.061003e-04	ci right 7.880714e-04	k: 1291	n:1730000
Cons ci ratio: 2.855037e-03	ci left: 5.207148e-01	ci right 5.222042e-01	k: 902125	n:1730000
KS ci ratio: 1.361146e-01	ci left: 4.465707e-04	ci right 5.123457e-04	k: 828	n:1730000
ATXN3L   1730000 perm   1684 sec   (1027 perm/sec)   p_kst 4.786127e-04   p_cons 5.214595e-01   p_joint 7.462428e-04

Joint ci ratio: 1.085970e-01	ci left: 7.076331e-04	ci right 7.894457e-04	k: 1301	n:1740000
Cons ci ratio: 2.846855e-03	ci left: 5.207109e-01	ci right 5.221959e-01	k: 907329	n:1740000
KS ci ratio: 1.355434e-01	ci left: 4.478905e-04	ci right 5.135608e-04	k: 835	n:1740000
ATXN3L   1740000 perm   1701 sec   (1023 perm/sec)   p_kst 4.798851e-04   p_cons 5.214534e-01   p_joint 7.477011e-04

Joint ci ratio: 1.084723e-01	ci left: 7.052571e-04	ci right 7.866954e-04	k: 1304	n:1750000
Cons ci ratio: 2.838471e-03	ci left: 5.207550e-01	ci right 5.222358e-01	k: 912617	n:1750000
KS ci ratio: 1.353817e-01	ci left: 4.464352e-04	ci right 5.118078e-04	k: 837	n:1750000
ATXN3L   1750000 perm   1719 sec   (1018 perm/sec)   p_kst 4.782857e-04   p_cons 5.214954e-01   p_joint 7.451429e-04

Joint ci ratio: 1.080590e-01	ci left: 7.067780e-04	ci right 7.880611e-04	k: 1314	n:1760000
Cons ci ratio: 2.830338e-03	ci left: 5.207674e-01	ci right 5.222439e-01	k: 917850	n:1760000
KS ci ratio: 1.348996e-01	ci left: 4.471925e-04	ci right 5.124240e-04	k: 843	n:1760000
ATXN3L   1760000 perm   1736 sec   (1014 perm/sec)   p_kst 4.789773e-04   p_cons 5.215057e-01   p_joint 7.465909e-04

Joint ci ratio: 1.076097e-01	ci left: 7.088320e-04	ci right 7.899910e-04	k: 1325	n:1770000
Cons ci ratio: 2.822488e-03	ci left: 5.207417e-01	ci right 5.222141e-01	k: 923016	n:1770000
KS ci ratio: 1.341859e-01	ci left: 4.495796e-04	ci right 5.147847e-04	k: 852	n:1770000
ATXN3L   1770000 perm   1753 sec   (1010 perm/sec)   p_kst 4.813559e-04   p_cons 5.214780e-01   p_joint 7.485876e-04

Joint ci ratio: 1.072061e-01	ci left: 7.103169e-04	ci right 7.913217e-04	k: 1335	n:1780000
Cons ci ratio: 2.814573e-03	ci left: 5.207394e-01	ci right 5.222077e-01	k: 928223	n:1780000
KS ci ratio: 1.336386e-01	ci left: 4.508547e-04	ci right 5.159569e-04	k: 859	n:1780000
ATXN3L   1780000 perm   1770 sec   (1005 perm/sec)   p_kst 4.825843e-04   p_cons 5.214736e-01   p_joint 7.500000e-04

Joint ci ratio: 1.068866e-01	ci left: 7.106983e-04	ci right 7.914898e-04	k: 1343	n:1790000
Cons ci ratio: 2.806388e-03	ci left: 5.207969e-01	ci right 5.222611e-01	k: 933537	n:1790000
KS ci ratio: 1.334835e-01	ci left: 4.494160e-04	ci right 5.142291e-04	k: 861	n:1790000
ATXN3L   1790000 perm   1788 sec   (1001 perm/sec)   p_kst 4.810056e-04   p_cons 5.215291e-01   p_joint 7.502793e-04

Joint ci ratio: 1.065699e-01	ci left: 7.110758e-04	ci right 7.916556e-04	k: 1351	n:1800000
Cons ci ratio: 2.798779e-03	ci left: 5.207638e-01	ci right 5.222239e-01	k: 938689	n:1800000
KS ci ratio: 1.331749e-01	ci left: 4.490673e-04	ci right 5.136686e-04	k: 865	n:1800000
ATXN3L   1800000 perm   1805 sec   (997 perm/sec)   p_kst 4.805556e-04   p_cons 5.214939e-01   p_joint 7.505556e-04

Joint ci ratio: 1.074485e-01	ci left: 6.953175e-04	ci right 7.748023e-04	k: 1329	n:1810000
Cons ci ratio: 2.791086e-03	ci left: 5.207570e-01	ci right 5.222131e-01	k: 943888	n:1810000
KS ci ratio: 1.325639e-01	ci left: 4.508593e-04	ci right 5.153973e-04	k: 873	n:1810000
ATXN3L   1810000 perm   1823 sec   (993 perm/sec)   p_kst 4.823204e-04   p_cons 5.214851e-01   p_joint 7.342541e-04

Joint ci ratio: 1.110587e-01	ci left: 6.460687e-04	ci right 7.225676e-04	k: 1244	n:1820000
Cons ci ratio: 2.783392e-03	ci left: 5.207619e-01	ci right 5.222139e-01	k: 949108	n:1820000
KS ci ratio: 1.321112e-01	ci left: 4.515696e-04	ci right 5.159713e-04	k: 879	n:1820000
ATXN3L   1820000 perm   1840 sec   (989 perm/sec)   p_kst 4.829670e-04   p_cons 5.214879e-01   p_joint 6.835165e-04

Joint ci ratio: 1.107036e-01	ci left: 6.467886e-04	ci right 7.231119e-04	k: 1252	n:1830000
Cons ci ratio: 2.775494e-03	ci left: 5.208147e-01	ci right 5.222628e-01	k: 954416	n:1830000
KS ci ratio: 1.317375e-01	ci left: 4.517441e-04	ci right 5.159741e-04	k: 884	n:1830000
ATXN3L   1830000 perm   1858 sec   (985 perm/sec)   p_kst 4.830601e-04   p_cons 5.215388e-01   p_joint 6.841530e-04

Joint ci ratio: 1.118257e-01	ci left: 6.300643e-04	ci right 7.052174e-04	k: 1227	n:1840000
Cons ci ratio: 2.767695e-03	ci left: 5.208611e-01	ci right 5.223052e-01	k: 959713	n:1840000
KS ci ratio: 1.313669e-01	ci left: 4.519169e-04	ci right 5.159767e-04	k: 889	n:1840000
ATXN3L   1840000 perm   1876 sec   (981 perm/sec)   p_kst 4.831522e-04   p_cons 5.215832e-01   p_joint 6.668478e-04

Joint ci ratio: 1.136463e-01	ci left: 6.061714e-04	ci right 6.797307e-04	k: 1188	n:1850000
Cons ci ratio: 2.760079e-03	ci left: 5.208858e-01	ci right 5.223260e-01	k: 964971	n:1850000
KS ci ratio: 1.307803e-01	ci left: 4.536567e-04	ci right 5.176536e-04	k: 897	n:1850000
ATXN3L   1850000 perm   1894 sec   (977 perm/sec)   p_kst 4.848649e-04   p_cons 5.216059e-01   p_joint 6.421622e-04

Joint ci ratio: 1.133607e-01	ci left: 6.060467e-04	ci right 6.793935e-04	k: 1194	n:1860000
Cons ci ratio: 2.752593e-03	ci left: 5.208979e-01	ci right 5.223342e-01	k: 970206	n:1860000
KS ci ratio: 1.304177e-01	ci left: 4.538180e-04	ci right 5.176465e-04	k: 902	n:1860000
ATXN3L   1860000 perm   1913 sec   (972 perm/sec)   p_kst 4.849462e-04   p_cons 5.216161e-01   p_joint 6.419355e-04

Joint ci ratio: 1.129831e-01	ci left: 6.069628e-04	ci right 6.801595e-04	k: 1202	n:1870000
Cons ci ratio: 2.745144e-03	ci left: 5.209142e-01	ci right 5.223467e-01	k: 975449	n:1870000
KS ci ratio: 1.301299e-01	ci left: 4.534605e-04	ci right 5.170870e-04	k: 906	n:1870000
ATXN3L   1870000 perm   1931 sec   (968 perm/sec)   p_kst 4.844920e-04   p_cons 5.216305e-01   p_joint 6.427807e-04

Joint ci ratio: 1.128426e-01	ci left: 6.052849e-04	ci right 6.781825e-04	k: 1205	n:1880000
Cons ci ratio: 2.737890e-03	ci left: 5.209059e-01	ci right 5.223345e-01	k: 980646	n:1880000
KS ci ratio: 1.298439e-01	ci left: 4.531069e-04	ci right 5.165334e-04	k: 910	n:1880000
ATXN3L   1880000 perm   1949 sec   (965 perm/sec)   p_kst 4.840426e-04   p_cons 5.216202e-01   p_joint 6.409574e-04

Joint ci ratio: 1.126560e-01	ci left: 6.041390e-04	ci right 6.767703e-04	k: 1209	n:1890000
Cons ci ratio: 2.730600e-03	ci left: 5.209145e-01	ci right 5.223394e-01	k: 985875	n:1890000
KS ci ratio: 1.294890e-01	ci left: 4.532692e-04	ci right 5.165317e-04	k: 915	n:1890000
ATXN3L   1890000 perm   1968 sec   (960 perm/sec)   p_kst 4.841270e-04   p_cons 5.216270e-01   p_joint 6.396825e-04

Joint ci ratio: 1.125167e-01	ci left: 6.024938e-04	ci right 6.748318e-04	k: 1212	n:1900000
Cons ci ratio: 2.723107e-03	ci left: 5.209710e-01	ci right 5.223921e-01	k: 991195	n:1900000
KS ci ratio: 1.292776e-01	ci left: 4.524114e-04	ci right 5.154431e-04	k: 918	n:1900000
ATXN3L   1900000 perm   1986 sec   (957 perm/sec)   p_kst 4.831579e-04   p_cons 5.216816e-01   p_joint 6.378947e-04

Joint ci ratio: 1.121015e-01	ci left: 6.039191e-04	ci right 6.761430e-04	k: 1221	n:1910000
Cons ci ratio: 2.715940e-03	ci left: 5.209782e-01	ci right 5.223956e-01	k: 996422	n:1910000
KS ci ratio: 1.290671e-01	ci left: 4.515627e-04	ci right 5.143659e-04	k: 921	n:1910000
ATXN3L   1910000 perm   2005 sec   (953 perm/sec)   p_kst 4.821990e-04   p_cons 5.216869e-01   p_joint 6.392670e-04

Joint ci ratio: 1.118729e-01	ci left: 6.033049e-04	ci right 6.752985e-04	k: 1226	n:1920000
Cons ci ratio: 2.708768e-03	ci left: 5.209968e-01	ci right 5.224104e-01	k: 1001671	n:1920000
KS ci ratio: 1.287186e-01	ci left: 4.517310e-04	ci right 5.143750e-04	k: 926	n:1920000
ATXN3L   1920000 perm   2024 sec   (949 perm/sec)   p_kst 4.822917e-04   p_cons 5.217036e-01   p_joint 6.385417e-04

Joint ci ratio: 1.116911e-01	ci left: 6.021935e-04	ci right 6.739300e-04	k: 1230	n:1930000
Cons ci ratio: 2.701676e-03	ci left: 5.210105e-01	ci right 5.224205e-01	k: 1006911	n:1930000
KS ci ratio: 1.285109e-01	ci left: 4.508948e-04	ci right 5.133142e-04	k: 929	n:1930000
ATXN3L   1930000 perm   2042 sec   (945 perm/sec)   p_kst 4.813472e-04   p_cons 5.217155e-01   p_joint 6.373057e-04

Joint ci ratio: 1.114199e-01	ci left: 6.020959e-04	ci right 6.736352e-04	k: 1236	n:1940000
Cons ci ratio: 2.694758e-03	ci left: 5.210025e-01	ci right 5.224088e-01	k: 1012109	n:1940000
KS ci ratio: 1.283041e-01	ci left: 4.500673e-04	ci right 5.122643e-04	k: 932	n:1940000
ATXN3L   1940000 perm   2061 sec   (941 perm/sec)   p_kst 4.804124e-04   p_cons 5.217057e-01   p_joint 6.371134e-04

Joint ci ratio: 1.156107e-01	ci left: 5.551601e-04	ci right 6.237730e-04	k: 1148	n:1950000
Cons ci ratio: 2.687596e-03	ci left: 5.210494e-01	ci right 5.224521e-01	k: 1017414	n:1950000
KS ci ratio: 1.279617e-01	ci left: 4.502412e-04	ci right 5.122836e-04	k: 937	n:1950000
ATXN3L   1950000 perm   2080 sec   (938 perm/sec)   p_kst 4.805128e-04   p_cons 5.217508e-01   p_joint 5.887179e-04

Joint ci ratio: 1.155103e-01	ci left: 5.533186e-04	ci right 6.216404e-04	k: 1150	n:1960000
Cons ci ratio: 2.680511e-03	ci left: 5.210922e-01	ci right 5.224914e-01	k: 1022712	n:1960000
KS ci ratio: 1.278256e-01	ci left: 4.489318e-04	ci right 5.107230e-04	k: 939	n:1960000
ATXN3L   1960000 perm   2100 sec   (933 perm/sec)   p_kst 4.790816e-04   p_cons 5.217918e-01   p_joint 5.867347e-04

Joint ci ratio: 1.268839e-01	ci left: 4.535332e-04	ci right 5.154633e-04	k: 953	n:1970000
Cons ci ratio: 2.673764e-03	ci left: 5.210819e-01	ci right 5.224775e-01	k: 1027906	n:1970000
KS ci ratio: 1.276899e-01	ci left: 4.476357e-04	ci right 5.091781e-04	k: 941	n:1970000
ATXN3L   1970000 perm   2121 sec   (929 perm/sec)   p_kst 4.776650e-04   p_cons 5.217797e-01   p_joint 4.837563e-04

Joint ci ratio: 1.265527e-01	ci left: 4.536879e-04	ci right 5.154652e-04	k: 958	n:1980000
Cons ci ratio: 2.666952e-03	ci left: 5.210933e-01	ci right 5.224854e-01	k: 1033143	n:1980000
KS ci ratio: 1.272852e-01	ci left: 4.483086e-04	ci right 5.097334e-04	k: 947	n:1980000
ATXN3L   1980000 perm   2142 sec   (924 perm/sec)   p_kst 4.782828e-04   p_cons 5.217894e-01   p_joint 4.838384e-04

Joint ci ratio: 1.263553e-01	ci left: 4.528679e-04	ci right 5.144301e-04	k: 961	n:1990000
Cons ci ratio: 2.660277e-03	ci left: 5.210886e-01	ci right 5.224772e-01	k: 1038348	n:1990000
KS ci ratio: 1.269508e-01	ci left: 4.484885e-04	ci right 5.097643e-04	k: 952	n:1990000
ATXN3L   1990000 perm   2161 sec   (921 perm/sec)   p_kst 4.783920e-04   p_cons 5.217829e-01   p_joint 4.829146e-04

Joint ci ratio: 1.261588e-01	ci left: 4.520561e-04	ci right 5.134053e-04	k: 964	n:2000000
Cons ci ratio: 2.653748e-03	ci left: 5.210659e-01	ci right 5.224510e-01	k: 1043517	n:2000000
KS ci ratio: 1.267515e-01	ci left: 4.476984e-04	ci right 5.087631e-04	k: 955	n:2000000
ATXN3L   2000000 perm   2180 sec   (917 perm/sec)   p_kst 4.775000e-04   p_cons 5.217585e-01   p_joint 4.820000e-04

Joint ci ratio: 9.620186e-02	ci left: 7.856592e-04	ci right 8.655415e-04	k: 1658	n:2010000
Cons ci ratio: 2.647108e-03	ci left: 5.210733e-01	ci right 5.224550e-01	k: 1048746	n:2010000
KS ci ratio: 1.262244e-01	ci left: 4.493253e-04	ci right 5.103379e-04	k: 963	n:2010000
ATXN3L   2010000 perm   2200 sec   (914 perm/sec)   p_kst 4.791045e-04   p_cons 5.217642e-01   p_joint 8.248756e-04

Joint ci ratio: 9.620206e-02	ci left: 7.817697e-04	ci right 8.612567e-04	k: 1658	n:2020000
Cons ci ratio: 2.640405e-03	ci left: 5.211020e-01	ci right 5.224802e-01	k: 1054018	n:2020000
KS ci ratio: 1.258983e-01	ci left: 4.494981e-04	ci right 5.103647e-04	k: 968	n:2020000
ATXN3L   2020000 perm   2221 sec   (909 perm/sec)   p_kst 4.792079e-04   p_cons 5.217911e-01   p_joint 8.207921e-04

Joint ci ratio: 9.599977e-02	ci left: 7.812841e-04	ci right 8.605452e-04	k: 1665	n:2030000
Cons ci ratio: 2.633982e-03	ci left: 5.210869e-01	ci right 5.224618e-01	k: 1059202	n:2030000
KS ci ratio: 1.256393e-01	ci left: 4.491922e-04	ci right 5.098830e-04	k: 972	n:2030000
ATXN3L   2030000 perm   2242 sec   (905 perm/sec)   p_kst 4.788177e-04   p_cons 5.217744e-01   p_joint 8.201970e-04

Joint ci ratio: 9.551348e-02	ci left: 7.855881e-04	ci right 8.648596e-04	k: 1682	n:2040000
Cons ci ratio: 2.627437e-03	ci left: 5.211040e-01	ci right 5.224754e-01	k: 1064451	n:2040000
KS ci ratio: 1.254461e-01	ci left: 4.484147e-04	ci right 5.089004e-04	k: 975	n:2040000
ATXN3L   2040000 perm   2262 sec   (902 perm/sec)   p_kst 4.779412e-04   p_cons 5.217897e-01   p_joint 8.245098e-04

Joint ci ratio: 9.537199e-02	ci left: 7.841367e-04	ci right 8.631380e-04	k: 1687	n:2050000
Cons ci ratio: 2.621062e-03	ci left: 5.210979e-01	ci right 5.224660e-01	k: 1069653	n:2050000
KS ci ratio: 1.251898e-01	ci left: 4.481174e-04	ci right 5.084303e-04	k: 979	n:2050000
ATXN3L   2050000 perm   2282 sec   (898 perm/sec)   p_kst 4.775610e-04   p_cons 5.217820e-01   p_joint 8.229268e-04

Joint ci ratio: 9.509070e-02	ci left: 7.850690e-04	ci right 8.639180e-04	k: 1697	n:2060000
Cons ci ratio: 2.614697e-03	ci left: 5.210987e-01	ci right 5.224634e-01	k: 1074869	n:2060000
KS ci ratio: 1.249352e-01	ci left: 4.478230e-04	ci right 5.079646e-04	k: 983	n:2060000
ATXN3L   2060000 perm   2301 sec   (895 perm/sec)   p_kst 4.771845e-04   p_cons 5.217811e-01   p_joint 8.237864e-04

Joint ci ratio: 9.492319e-02	ci left: 7.841061e-04	ci right 8.627119e-04	k: 1703	n:2070000
Cons ci ratio: 2.608416e-03	ci left: 5.210922e-01	ci right 5.224536e-01	k: 1080070	n:2070000
KS ci ratio: 1.247452e-01	ci left: 4.470637e-04	ci right 5.070052e-04	k: 986	n:2070000
ATXN3L   2070000 perm   2321 sec   (892 perm/sec)   p_kst 4.763285e-04   p_cons 5.217729e-01   p_joint 8.227053e-04

Joint ci ratio: 9.472885e-02	ci left: 7.836219e-04	ci right 8.620094e-04	k: 1710	n:2080000
Cons ci ratio: 2.601960e-03	ci left: 5.211281e-01	ci right 5.224863e-01	k: 1085359	n:2080000
KS ci ratio: 1.244932e-01	ci left: 4.467774e-04	ci right 5.065507e-04	k: 990	n:2080000
ATXN3L   2080000 perm   2341 sec   (888 perm/sec)   p_kst 4.759615e-04   p_cons 5.218072e-01   p_joint 8.221154e-04

Joint ci ratio: 9.448067e-02	ci left: 7.840769e-04	ci right 8.622930e-04	k: 1719	n:2090000
Cons ci ratio: 2.595795e-03	ci left: 5.211168e-01	ci right 5.224717e-01	k: 1090550	n:2090000
KS ci ratio: 1.241803e-01	ci left: 4.469577e-04	ci right 5.065937e-04	k: 995	n:2090000
ATXN3L   2090000 perm   2361 sec   (885 perm/sec)   p_kst 4.760766e-04   p_cons 5.217943e-01   p_joint 8.224880e-04

Joint ci ratio: 9.687798e-02	ci left: 7.412993e-04	ci right 8.172311e-04	k: 1635	n:2100000
Cons ci ratio: 2.589506e-03	ci left: 5.211379e-01	ci right 5.224896e-01	k: 1095809	n:2100000
KS ci ratio: 1.239317e-01	ci left: 4.466750e-04	ci right 5.061452e-04	k: 999	n:2100000
ATXN3L   2100000 perm   2382 sec   (882 perm/sec)   p_kst 4.757143e-04   p_cons 5.218138e-01   p_joint 7.785714e-04

Joint ci ratio: 9.664198e-02	ci left: 7.414858e-04	ci right 8.172411e-04	k: 1643	n:2110000
Cons ci ratio: 2.583419e-03	ci left: 5.211286e-01	ci right 5.224771e-01	k: 1101004	n:2110000
KS ci ratio: 1.235616e-01	ci left: 4.473136e-04	ci right 5.066780e-04	k: 1005	n:2110000
ATXN3L   2110000 perm   2402 sec   (878 perm/sec)   p_kst 4.763033e-04   p_cons 5.218028e-01   p_joint 7.786730e-04

Joint ci ratio: 9.836371e-02	ci left: 7.117565e-04	ci right 7.858447e-04	k: 1586	n:2120000
Cons ci ratio: 2.577423e-03	ci left: 5.211099e-01	ci right 5.224552e-01	k: 1106179	n:2120000
KS ci ratio: 1.231947e-01	ci left: 4.479465e-04	ci right 5.072055e-04	k: 1011	n:2120000
ATXN3L   2120000 perm   2422 sec   (875 perm/sec)   p_kst 4.768868e-04   p_cons 5.217825e-01   p_joint 7.481132e-04

Joint ci ratio: 1.041382e-01	ci left: 6.301631e-04	ci right 6.998446e-04	k: 1415	n:2130000
Cons ci ratio: 2.571429e-03	ci left: 5.210993e-01	ci right 5.224415e-01	k: 1111371	n:2130000
KS ci ratio: 1.227105e-01	ci left: 4.494838e-04	ci right 5.086955e-04	k: 1019	n:2130000
ATXN3L   2130000 perm   2443 sec   (872 perm/sec)   p_kst 4.784038e-04   p_cons 5.217704e-01   p_joint 6.643192e-04

Joint ci ratio: 1.038087e-01	ci left: 6.313146e-04	ci right 7.008892e-04	k: 1424	n:2140000
Cons ci ratio: 2.565163e-03	ci left: 5.211496e-01	ci right 5.224886e-01	k: 1116693	n:2140000
KS ci ratio: 1.222320e-01	ci left: 4.510073e-04	ci right 5.101712e-04	k: 1027	n:2140000
ATXN3L   2140000 perm   2463 sec   (869 perm/sec)   p_kst 4.799065e-04   p_cons 5.218192e-01   p_joint 6.654206e-04

Joint ci ratio: 1.034463e-01	ci left: 6.329089e-04	ci right 7.024009e-04	k: 1434	n:2150000
Cons ci ratio: 2.559057e-03	ci left: 5.211772e-01	ci right 5.225130e-01	k: 1121967	n:2150000
KS ci ratio: 1.219359e-01	ci left: 4.511641e-04	ci right 5.101949e-04	k: 1032	n:2150000
ATXN3L   2150000 perm   2485 sec   (865 perm/sec)   p_kst 4.800000e-04   p_cons 5.218451e-01   p_joint 6.669767e-04

Joint ci ratio: 8.859410e-02	ci left: 8.654292e-04	ci right 9.461037e-04	k: 1955	n:2160000
Cons ci ratio: 2.553192e-03	ci left: 5.211660e-01	ci right 5.224988e-01	k: 1127158	n:2160000
KS ci ratio: 1.215247e-01	ci left: 4.522175e-04	ci right 5.111722e-04	k: 1039	n:2160000
ATXN3L   2160000 perm   2506 sec   (862 perm/sec)   p_kst 4.810185e-04   p_cons 5.218324e-01   p_joint 9.050926e-04

Joint ci ratio: 8.843604e-02	ci left: 8.645955e-04	ci right 9.450410e-04	k: 1962	n:2170000
Cons ci ratio: 2.547369e-03	ci left: 5.211545e-01	ci right 5.224842e-01	k: 1132348	n:2170000
KS ci ratio: 1.213499e-01	ci left: 4.514740e-04	ci right 5.102411e-04	k: 1042	n:2170000
ATXN3L   2170000 perm   2529 sec   (858 perm/sec)   p_kst 4.801843e-04   p_cons 5.218194e-01   p_joint 9.041475e-04

Joint ci ratio: 8.960897e-02	ci left: 8.377552e-04	ci right 9.167914e-04	k: 1911	n:2180000
Cons ci ratio: 2.541480e-03	ci left: 5.211637e-01	ci right 5.224904e-01	k: 1137583	n:2180000
KS ci ratio: 1.211179e-01	ci left: 4.511822e-04	ci right 5.097910e-04	k: 1046	n:2180000
ATXN3L   2180000 perm   2549 sec   (855 perm/sec)   p_kst 4.798165e-04   p_cons 5.218271e-01   p_joint 8.766055e-04

Joint ci ratio: 8.944542e-02	ci left: 8.370546e-04	ci right 9.158730e-04	k: 1918	n:2190000
Cons ci ratio: 2.535825e-03	ci left: 5.211350e-01	ci right 5.224586e-01	k: 1142735	n:2190000
KS ci ratio: 1.208297e-01	ci left: 4.513361e-04	ci right 5.098154e-04	k: 1051	n:2190000
ATXN3L   2190000 perm   2570 sec   (852 perm/sec)   p_kst 4.799087e-04   p_cons 5.217968e-01   p_joint 8.757991e-04

Joint ci ratio: 9.159668e-02	ci left: 7.937101e-04	ci right 8.703409e-04	k: 1829	n:2200000
Cons ci ratio: 2.530078e-03	ci left: 5.211319e-01	ci right 5.224525e-01	k: 1147943	n:2200000
KS ci ratio: 1.205436e-01	ci left: 4.514886e-04	ci right 5.098393e-04	k: 1056	n:2200000
ATXN3L   2200000 perm   2591 sec   (849 perm/sec)   p_kst 4.800000e-04   p_cons 5.217923e-01   p_joint 8.313636e-04

Joint ci ratio: 9.162191e-02	ci left: 7.896765e-04	ci right 8.659400e-04	k: 1828	n:2210000
Cons ci ratio: 2.524501e-03	ci left: 5.211032e-01	ci right 5.224208e-01	k: 1153094	n:2210000
KS ci ratio: 1.202595e-01	ci left: 4.516400e-04	ci right 5.098629e-04	k: 1061	n:2210000
ATXN3L   2210000 perm   2616 sec   (845 perm/sec)   p_kst 4.800905e-04   p_cons 5.217620e-01   p_joint 8.271493e-04

Joint ci ratio: 9.147204e-02	ci left: 7.887602e-04	ci right 8.648039e-04	k: 1834	n:2220000
Cons ci ratio: 2.518867e-03	ci left: 5.210931e-01	ci right 5.224077e-01	k: 1158286	n:2220000
KS ci ratio: 1.200900e-01	ci left: 4.509163e-04	ci right 5.089582e-04	k: 1064	n:2220000
ATXN3L   2220000 perm   2637 sec   (842 perm/sec)   p_kst 4.792793e-04   p_cons 5.217505e-01   p_joint 8.261261e-04

Joint ci ratio: 9.157215e-02	ci left: 7.834704e-04	ci right 8.590912e-04	k: 1830	n:2230000
Cons ci ratio: 2.513272e-03	ci left: 5.210827e-01	ci right 5.223944e-01	k: 1163477	n:2230000
KS ci ratio: 1.198091e-01	ci left: 4.510692e-04	ci right 5.089853e-04	k: 1069	n:2230000
ATXN3L   2230000 perm   2658 sec   (839 perm/sec)   p_kst 4.793722e-04   p_cons 5.217386e-01   p_joint 8.206278e-04

Joint ci ratio: 9.132308e-02	ci left: 7.843349e-04	ci right 8.598223e-04	k: 1840	n:2240000
Cons ci ratio: 2.507868e-03	ci left: 5.210420e-01	ci right 5.223508e-01	k: 1168600	n:2240000
KS ci ratio: 1.193636e-01	ci left: 4.525201e-04	ci right 5.103912e-04	k: 1077	n:2240000
ATXN3L   2240000 perm   2680 sec   (836 perm/sec)   p_kst 4.808036e-04   p_cons 5.216964e-01   p_joint 8.214286e-04

Joint ci ratio: 9.112531e-02	ci left: 7.843234e-04	ci right 8.596376e-04	k: 1848	n:2250000
Cons ci ratio: 2.502186e-03	ci left: 5.210639e-01	ci right 5.223698e-01	k: 1173863	n:2250000
KS ci ratio: 1.191428e-01	ci left: 4.522336e-04	ci right 5.099536e-04	k: 1081	n:2250000
ATXN3L   2250000 perm   2702 sec   (833 perm/sec)   p_kst 4.804444e-04   p_cons 5.217169e-01   p_joint 8.213333e-04

Joint ci ratio: 9.092881e-02	ci left: 7.843122e-04	ci right 8.594542e-04	k: 1856	n:2260000
Cons ci ratio: 2.496645e-03	ci left: 5.210653e-01	ci right 5.223683e-01	k: 1179080	n:2260000
KS ci ratio: 1.187592e-01	ci left: 4.532378e-04	ci right 5.108866e-04	k: 1088	n:2260000
ATXN3L   2260000 perm   2724 sec   (830 perm/sec)   p_kst 4.814159e-04   p_cons 5.217168e-01   p_joint 8.212389e-04

Joint ci ratio: 9.100258e-02	ci left: 7.795655e-04	ci right 8.543165e-04	k: 1853	n:2270000
Cons ci ratio: 2.491239e-03	ci left: 5.210468e-01	ci right 5.223469e-01	k: 1184252	n:2270000
KS ci ratio: 1.184334e-01	ci left: 4.538059e-04	ci right 5.113575e-04	k: 1094	n:2270000
ATXN3L   2270000 perm   2745 sec   (827 perm/sec)   p_kst 4.819383e-04   p_cons 5.216969e-01   p_joint 8.162996e-04

Joint ci ratio: 9.083129e-02	ci left: 7.791467e-04	ci right 8.537095e-04	k: 1860	n:2280000
Cons ci ratio: 2.485678e-03	ci left: 5.210667e-01	ci right 5.223639e-01	k: 1189511	n:2280000
KS ci ratio: 1.182715e-01	ci left: 4.530924e-04	ci right 5.104695e-04	k: 1097	n:2280000
ATXN3L   2280000 perm   2767 sec   (824 perm/sec)   p_kst 4.811404e-04   p_cons 5.217154e-01   p_joint 8.157895e-04

Joint ci ratio: 9.115063e-02	ci left: 7.701965e-04	ci right 8.441757e-04	k: 1847	n:2290000
Cons ci ratio: 2.480279e-03	ci left: 5.210611e-01	ci right 5.223555e-01	k: 1194712	n:2290000
KS ci ratio: 1.180031e-01	ci left: 4.532327e-04	ci right 5.104882e-04	k: 1102	n:2290000
ATXN3L   2290000 perm   2789 sec   (821 perm/sec)   p_kst 4.812227e-04   p_cons 5.217083e-01   p_joint 8.065502e-04

Joint ci ratio: 9.100306e-02	ci left: 7.693971e-04	ci right 8.431735e-04	k: 1853	n:2300000
Cons ci ratio: 2.474873e-03	ci left: 5.210642e-01	ci right 5.223558e-01	k: 1199933	n:2300000
KS ci ratio: 1.177366e-01	ci left: 4.533719e-04	ci right 5.105067e-04	k: 1107	n:2300000
ATXN3L   2300000 perm   2811 sec   (818 perm/sec)   p_kst 4.813043e-04   p_cons 5.217100e-01   p_joint 8.056522e-04

Joint ci ratio: 9.083177e-02	ci left: 7.690277e-04	ci right 8.426226e-04	k: 1860	n:2310000
Cons ci ratio: 2.469549e-03	ci left: 5.210577e-01	ci right 5.223465e-01	k: 1205132	n:2310000
KS ci ratio: 1.174718e-01	ci left: 4.535101e-04	ci right 5.105248e-04	k: 1112	n:2310000
ATXN3L   2310000 perm   2833 sec   (815 perm/sec)   p_kst 4.813853e-04   p_cons 5.217022e-01   p_joint 8.051948e-04

Joint ci ratio: 9.063717e-02	ci left: 7.690830e-04	ci right 8.425171e-04	k: 1868	n:2320000
Cons ci ratio: 2.464181e-03	ci left: 5.210673e-01	ci right 5.223533e-01	k: 1210368	n:2320000
KS ci ratio: 1.172613e-01	ci left: 4.532288e-04	ci right 5.100990e-04	k: 1116	n:2320000
ATXN3L   2320000 perm   2856 sec   (812 perm/sec)   p_kst 4.810345e-04   p_cons 5.217103e-01   p_joint 8.051724e-04

Joint ci ratio: 9.037156e-02	ci left: 7.703964e-04	ci right 8.437290e-04	k: 1879	n:2330000
Cons ci ratio: 2.458752e-03	ci left: 5.210961e-01	ci right 5.223794e-01	k: 1215649	n:2330000
KS ci ratio: 1.168956e-01	ci left: 4.542000e-04	ci right 5.110020e-04	k: 1123	n:2330000
ATXN3L   2330000 perm   2878 sec   (810 perm/sec)   p_kst 4.819742e-04   p_cons 5.217378e-01   p_joint 8.064378e-04

Joint ci ratio: 9.020380e-02	ci left: 7.700280e-04	ci right 8.431823e-04	k: 1886	n:2340000
Cons ci ratio: 2.453410e-03	ci left: 5.211144e-01	ci right 5.223949e-01	k: 1220906	n:2340000
KS ci ratio: 1.166881e-01	ci left: 4.539184e-04	ci right 5.105775e-04	k: 1127	n:2340000
ATXN3L   2340000 perm   2901 sec   (806 perm/sec)   p_kst 4.816239e-04   p_cons 5.217547e-01   p_joint 8.059829e-04

Joint ci ratio: 9.013228e-02	ci left: 7.679991e-04	ci right 8.408997e-04	k: 1889	n:2350000
Cons ci ratio: 2.448244e-03	ci left: 5.211036e-01	ci right 5.223814e-01	k: 1226095	n:2350000
KS ci ratio: 1.164818e-01	ci left: 4.536393e-04	ci right 5.101566e-04	k: 1131	n:2350000
ATXN3L   2350000 perm   2924 sec   (804 perm/sec)   p_kst 4.812766e-04   p_cons 5.217426e-01   p_joint 8.038298e-04

Joint ci ratio: 8.610042e-02	ci left: 8.397519e-04	ci right 9.157187e-04	k: 2070	n:2360000
Cons ci ratio: 2.443048e-03	ci left: 5.211057e-01	ci right 5.223807e-01	k: 1231314	n:2360000
KS ci ratio: 1.161743e-01	ci left: 4.541855e-04	ci right 5.106112e-04	k: 1137	n:2360000
ATXN3L   2360000 perm   2946 sec   (801 perm/sec)   p_kst 4.817797e-04   p_cons 5.217432e-01   p_joint 8.771186e-04

Joint ci ratio: 8.583138e-02	ci left: 8.415760e-04	ci right 9.174580e-04	k: 2083	n:2370000
Cons ci ratio: 2.437916e-03	ci left: 5.211014e-01	ci right 5.223737e-01	k: 1236518	n:2370000
KS ci ratio: 1.157175e-01	ci left: 4.559565e-04	ci right 5.123643e-04	k: 1146	n:2370000
ATXN3L   2370000 perm   2970 sec   (798 perm/sec)   p_kst 4.835443e-04   p_cons 5.217376e-01   p_joint 8.789030e-04

Joint ci ratio: 8.630955e-02	ci left: 8.285839e-04	ci right 9.037316e-04	k: 2060	n:2380000
Cons ci ratio: 2.432896e-03	ci left: 5.210807e-01	ci right 5.223504e-01	k: 1241683	n:2380000
KS ci ratio: 1.156168e-01	ci left: 4.548567e-04	ci right 5.110762e-04	k: 1148	n:2380000
ATXN3L   2380000 perm   2992 sec   (795 perm/sec)   p_kst 4.823529e-04   p_cons 5.217155e-01   p_joint 8.655462e-04

Joint ci ratio: 8.614254e-02	ci left: 8.283921e-04	ci right 9.033697e-04	k: 2068	n:2390000
Cons ci ratio: 2.427677e-03	ci left: 5.211075e-01	ci right 5.223745e-01	k: 1246961	n:2390000
KS ci ratio: 1.153661e-01	ci left: 4.549852e-04	ci right 5.110902e-04	k: 1153	n:2390000
ATXN3L   2390000 perm   3015 sec   (793 perm/sec)   p_kst 4.824268e-04   p_cons 5.217410e-01   p_joint 8.652720e-04

Joint ci ratio: 8.637280e-02	ci left: 8.204559e-04	ci right 8.949237e-04	k: 2057	n:2400000
Cons ci ratio: 2.422611e-03	ci left: 5.211095e-01	ci right 5.223738e-01	k: 1252180	n:2400000
KS ci ratio: 1.152663e-01	ci left: 4.538987e-04	ci right 5.098181e-04	k: 1155	n:2400000
ATXN3L   2400000 perm   3040 sec   (790 perm/sec)   p_kst 4.812500e-04   p_cons 5.217417e-01   p_joint 8.570833e-04

Joint ci ratio: 8.620542e-02	ci left: 8.202993e-04	ci right 8.946014e-04	k: 2065	n:2410000
Cons ci ratio: 2.417442e-03	ci left: 5.211392e-01	ci right 5.224010e-01	k: 1257466	n:2410000
KS ci ratio: 1.150178e-01	ci left: 4.540302e-04	ci right 5.098370e-04	k: 1160	n:2410000
ATXN3L   2410000 perm   3065 sec   (786 perm/sec)   p_kst 4.813278e-04   p_cons 5.217701e-01   p_joint 8.568465e-04

Joint ci ratio: 8.605978e-02	ci left: 8.197399e-04	ci right 8.938596e-04	k: 2072	n:2420000
Cons ci ratio: 2.412453e-03	ci left: 5.211382e-01	ci right 5.223973e-01	k: 1262678	n:2420000
KS ci ratio: 1.148696e-01	ci left: 4.533581e-04	ci right 5.090056e-04	k: 1163	n:2420000
ATXN3L   2420000 perm   3087 sec   (784 perm/sec)   p_kst 4.805785e-04   p_cons 5.217678e-01   p_joint 8.561983e-04

Joint ci ratio: 8.581171e-02	ci left: 8.211987e-04	ci right 8.952255e-04	k: 2084	n:2430000
Cons ci ratio: 2.407394e-03	ci left: 5.211581e-01	ci right 5.224147e-01	k: 1267941	n:2430000
KS ci ratio: 1.145746e-01	ci left: 4.538907e-04	ci right 5.094509e-04	k: 1169	n:2430000
ATXN3L   2430000 perm   3110 sec   (781 perm/sec)   p_kst 4.810700e-04   p_cons 5.217864e-01   p_joint 8.576132e-04

Joint ci ratio: 8.797079e-02	ci left: 7.773382e-04	ci right 8.492649e-04	k: 1983	n:2440000
Cons ci ratio: 2.402519e-03	ci left: 5.211464e-01	ci right 5.224003e-01	k: 1273127	n:2440000
KS ci ratio: 1.143306e-01	ci left: 4.540210e-04	ci right 5.094708e-04	k: 1174	n:2440000
ATXN3L   2440000 perm   3133 sec   (779 perm/sec)   p_kst 4.811475e-04   p_cons 5.217734e-01   p_joint 8.127049e-04

Joint ci ratio: 8.766194e-02	ci left: 7.797542e-04	ci right 8.516382e-04	k: 1997	n:2450000
Cons ci ratio: 2.397665e-03	ci left: 5.211363e-01	ci right 5.223877e-01	k: 1278317	n:2450000
KS ci ratio: 1.139433e-01	ci left: 4.553400e-04	ci right 5.107498e-04	k: 1182	n:2450000
ATXN3L   2450000 perm   3156 sec   (776 perm/sec)   p_kst 4.824490e-04   p_cons 5.217620e-01   p_joint 8.151020e-04

Joint ci ratio: 8.757440e-02	ci left: 7.781749e-04	ci right 8.498379e-04	k: 2001	n:2460000
Cons ci ratio: 2.392806e-03	ci left: 5.211337e-01	ci right 5.223825e-01	k: 1283525	n:2460000
KS ci ratio: 1.138472e-01	ci left: 4.542789e-04	ci right 5.095097e-04	k: 1184	n:2460000
ATXN3L   2460000 perm   3179 sec   (774 perm/sec)   p_kst 4.813008e-04   p_cons 5.217581e-01   p_joint 8.134146e-04

Joint ci ratio: 8.739995e-02	ci left: 7.781924e-04	ci right 8.497070e-04	k: 2009	n:2470000
Cons ci ratio: 2.387952e-03	ci left: 5.211359e-01	ci right 5.223822e-01	k: 1288745	n:2470000
KS ci ratio: 1.136077e-01	ci left: 4.544064e-04	ci right 5.095288e-04	k: 1189	n:2470000
ATXN3L   2470000 perm   3203 sec   (771 perm/sec)   p_kst 4.813765e-04   p_cons 5.217591e-01   p_joint 8.133603e-04

Joint ci ratio: 8.792703e-02	ci left: 7.655890e-04	ci right 8.363915e-04	k: 1985	n:2480000
Cons ci ratio: 2.383192e-03	ci left: 5.211248e-01	ci right 5.223687e-01	k: 1293932	n:2480000
KS ci ratio: 1.135601e-01	ci left: 4.529658e-04	ci right 5.078889e-04	k: 1190	n:2480000
ATXN3L   2480000 perm   3228 sec   (768 perm/sec)   p_kst 4.798387e-04   p_cons 5.217468e-01   p_joint 8.004032e-04

Joint ci ratio: 9.440457e-02	ci left: 6.592951e-04	ci right 7.250076e-04	k: 1722	n:2490000
Cons ci ratio: 2.378487e-03	ci left: 5.211082e-01	ci right 5.223495e-01	k: 1299105	n:2490000
KS ci ratio: 1.132278e-01	ci left: 4.538782e-04	ci right 5.087401e-04	k: 1197	n:2490000
ATXN3L   2490000 perm   3252 sec   (766 perm/sec)   p_kst 4.807229e-04   p_cons 5.217289e-01   p_joint 6.915663e-04

Joint ci ratio: 9.410458e-02	ci left: 6.609542e-04	ci right 7.266112e-04	k: 1733	n:2500000
Cons ci ratio: 2.373722e-03	ci left: 5.211102e-01	ci right 5.223490e-01	k: 1304324	n:2500000
KS ci ratio: 1.128516e-01	ci left: 4.551723e-04	ci right 5.099956e-04	k: 1205	n:2500000
ATXN3L   2500000 perm   3275 sec   (763 perm/sec)   p_kst 4.820000e-04   p_cons 5.217296e-01   p_joint 6.932000e-04

Joint ci ratio: 9.388823e-02	ci left: 6.614333e-04	ci right 7.269785e-04	k: 1741	n:2510000
Cons ci ratio: 2.369137e-03	ci left: 5.210802e-01	ci right 5.223166e-01	k: 1309463	n:2510000
KS ci ratio: 1.127115e-01	ci left: 4.545203e-04	ci right 5.091927e-04	k: 1208	n:2510000
ATXN3L   2510000 perm   3299 sec   (761 perm/sec)   p_kst 4.812749e-04   p_cons 5.216984e-01   p_joint 6.936255e-04

Joint ci ratio: 9.370016e-02	ci left: 6.615212e-04	ci right 7.269366e-04	k: 1748	n:2520000
Cons ci ratio: 2.364354e-03	ci left: 5.210977e-01	ci right 5.223316e-01	k: 1314721	n:2520000
KS ci ratio: 1.126184e-01	ci left: 4.534879e-04	ci right 5.079881e-04	k: 1210	n:2520000
ATXN3L   2520000 perm   3324 sec   (758 perm/sec)   p_kst 4.801587e-04   p_cons 5.217147e-01   p_joint 6.936508e-04

Joint ci ratio: 9.345996e-02	ci left: 6.623805e-04	ci right 7.277039e-04	k: 1757	n:2530000
Cons ci ratio: 2.359580e-03	ci left: 5.211194e-01	ci right 5.223509e-01	k: 1319990	n:2530000
KS ci ratio: 1.124793e-01	ci left: 4.528479e-04	ci right 5.071994e-04	k: 1213	n:2530000
ATXN3L   2530000 perm   3348 sec   (756 perm/sec)   p_kst 4.794466e-04   p_cons 5.217352e-01   p_joint 6.944664e-04

Joint ci ratio: 9.319522e-02	ci left: 6.636179e-04	ci right 7.288677e-04	k: 1767	n:2540000
Cons ci ratio: 2.354898e-03	ci left: 5.211276e-01	ci right 5.223566e-01	k: 1325225	n:2540000
KS ci ratio: 1.122944e-01	ci left: 4.525955e-04	ci right 5.068216e-04	k: 1217	n:2540000
ATXN3L   2540000 perm   3372 sec   (753 perm/sec)   p_kst 4.791339e-04   p_cons 5.217421e-01   p_joint 6.956693e-04

Joint ci ratio: 9.293272e-02	ci left: 6.648458e-04	ci right 7.300222e-04	k: 1777	n:2550000
Cons ci ratio: 2.350360e-03	ci left: 5.211110e-01	ci right 5.223376e-01	k: 1330397	n:2550000
KS ci ratio: 1.120188e-01	ci left: 4.531076e-04	ci right 5.072530e-04	k: 1223	n:2550000
ATXN3L   2550000 perm   3396 sec   (751 perm/sec)   p_kst 4.796078e-04   p_cons 5.217243e-01   p_joint 6.968627e-04

Joint ci ratio: 9.259472e-02	ci left: 6.672091e-04	ci right 7.323664e-04	k: 1790	n:2560000
Cons ci ratio: 2.345673e-03	ci left: 5.211316e-01	ci right 5.223558e-01	k: 1335664	n:2560000
KS ci ratio: 1.117452e-01	ci left: 4.536158e-04	ci right 5.076808e-04	k: 1229	n:2560000
ATXN3L   2560000 perm   3422 sec   (748 perm/sec)   p_kst 4.800781e-04   p_cons 5.217437e-01   p_joint 6.992187e-04

Joint ci ratio: 9.238859e-02	ci left: 6.676538e-04	ci right 7.327016e-04	k: 1798	n:2570000
Cons ci ratio: 2.341148e-03	ci left: 5.211237e-01	ci right 5.223455e-01	k: 1340858	n:2570000
KS ci ratio: 1.114286e-01	ci left: 4.544985e-04	ci right 5.085051e-04	k: 1236	n:2570000
ATXN3L   2570000 perm   3446 sec   (746 perm/sec)   p_kst 4.809339e-04   p_cons 5.217346e-01   p_joint 6.996109e-04

Joint ci ratio: 9.226051e-02	ci left: 6.669592e-04	ci right 7.318444e-04	k: 1803	n:2580000
Cons ci ratio: 2.336440e-03	ci left: 5.211604e-01	ci right 5.223799e-01	k: 1346167	n:2580000
KS ci ratio: 1.112489e-01	ci left: 4.542441e-04	ci right 5.081277e-04	k: 1240	n:2580000
ATXN3L   2580000 perm   3473 sec   (743 perm/sec)   p_kst 4.806202e-04   p_cons 5.217702e-01   p_joint 6.988372e-04

Joint ci ratio: 9.208203e-02	ci left: 6.670245e-04	ci right 7.317837e-04	k: 1810	n:2590000
Cons ci ratio: 2.332010e-03	ci left: 5.211436e-01	ci right 5.223606e-01	k: 1351338	n:2590000
KS ci ratio: 1.110254e-01	ci left: 4.543671e-04	ci right 5.081500e-04	k: 1245	n:2590000
ATXN3L   2590000 perm   3497 sec   (741 perm/sec)   p_kst 4.806950e-04   p_cons 5.217521e-01   p_joint 6.988417e-04

Joint ci ratio: 9.185403e-02	ci left: 6.678409e-04	ci right 7.325103e-04	k: 1819	n:2600000
Cons ci ratio: 2.327529e-03	ci left: 5.211430e-01	ci right 5.223577e-01	k: 1356551	n:2600000
KS ci ratio: 1.107591e-01	ci left: 4.548632e-04	ci right 5.085672e-04	k: 1251	n:2600000
ATXN3L   2600000 perm   3522 sec   (738 perm/sec)   p_kst 4.811538e-04   p_cons 5.217504e-01   p_joint 6.996154e-04

Joint ci ratio: 9.172816e-02	ci left: 6.671539e-04	ci right 7.316634e-04	k: 1824	n:2610000
Cons ci ratio: 2.323140e-03	ci left: 5.211282e-01	ci right 5.223407e-01	k: 1361727	n:2610000
KS ci ratio: 1.105826e-01	ci left: 4.546106e-04	ci right 5.081936e-04	k: 1255	n:2610000
ATXN3L   2610000 perm   3547 sec   (736 perm/sec)   p_kst 4.808429e-04   p_cons 5.217345e-01   p_joint 6.988506e-04

Joint ci ratio: 9.145289e-02	ci left: 6.687098e-04	ci right 7.331654e-04	k: 1835	n:2620000
Cons ci ratio: 2.318759e-03	ci left: 5.211171e-01	ci right 5.223272e-01	k: 1366912	n:2620000
KS ci ratio: 1.102756e-01	ci left: 4.554734e-04	ci right 5.089995e-04	k: 1262	n:2620000
ATXN3L   2620000 perm   3571 sec   (734 perm/sec)   p_kst 4.816794e-04   p_cons 5.217221e-01   p_joint 7.003817e-04

Joint ci ratio: 9.125428e-02	ci left: 6.691396e-04	ci right 7.334890e-04	k: 1843	n:2630000
Cons ci ratio: 2.314344e-03	ci left: 5.211189e-01	ci right 5.223267e-01	k: 1372131	n:2630000
KS ci ratio: 1.099713e-01	ci left: 4.563299e-04	ci right 5.097990e-04	k: 1269	n:2630000
ATXN3L   2630000 perm   3596 sec   (731 perm/sec)   p_kst 4.825095e-04   p_cons 5.217228e-01   p_joint 7.007605e-04

Joint ci ratio: 9.105695e-02	ci left: 6.695662e-04	ci right 7.338099e-04	k: 1851	n:2640000
Cons ci ratio: 2.309764e-03	ci left: 5.211616e-01	ci right 5.223671e-01	k: 1377458	n:2640000
KS ci ratio: 1.097985e-01	ci left: 4.560749e-04	ci right 5.094247e-04	k: 1273	n:2640000
ATXN3L   2640000 perm   3620 sec   (729 perm/sec)   p_kst 4.821970e-04   p_cons 5.217644e-01   p_joint 7.011364e-04

Joint ci ratio: 9.088535e-02	ci left: 6.696209e-04	ci right 7.337424e-04	k: 1858	n:2650000
Cons ci ratio: 2.305401e-03	ci left: 5.211629e-01	ci right 5.223661e-01	k: 1382676	n:2650000
KS ci ratio: 1.096266e-01	ci left: 4.558218e-04	ci right 5.090532e-04	k: 1277	n:2650000
ATXN3L   2650000 perm   3645 sec   (727 perm/sec)   p_kst 4.818868e-04   p_cons 5.217645e-01   p_joint 7.011321e-04

Joint ci ratio: 8.735901e-02	ci left: 7.233418e-04	ci right 7.897829e-04	k: 2011	n:2660000
Cons ci ratio: 2.300968e-03	ci left: 5.211848e-01	ci right 5.223858e-01	k: 1387949	n:2660000
KS ci ratio: 1.094127e-01	ci left: 4.559364e-04	ci right 5.090706e-04	k: 1282	n:2660000
ATXN3L   2660000 perm   3673 sec   (724 perm/sec)   p_kst 4.819549e-04   p_cons 5.217853e-01   p_joint 7.560150e-04

Joint ci ratio: 8.714268e-02	ci left: 7.242962e-04	ci right 7.906519e-04	k: 2021	n:2670000
Cons ci ratio: 2.296498e-03	ci left: 5.212201e-01	ci right 5.224188e-01	k: 1393258	n:2670000
KS ci ratio: 1.091154e-01	ci left: 4.567789e-04	ci right 5.098573e-04	k: 1289	n:2670000
ATXN3L   2670000 perm   3698 sec   (722 perm/sec)   p_kst 4.827715e-04   p_cons 5.218195e-01   p_joint 7.569288e-04

Joint ci ratio: 8.755544e-02	ci left: 7.146588e-04	ci right 7.804576e-04	k: 2002	n:2680000
Cons ci ratio: 2.292100e-03	ci left: 5.212450e-01	ci right 5.224415e-01	k: 1398540	n:2680000
KS ci ratio: 1.091155e-01	ci left: 4.550745e-04	ci right 5.079549e-04	k: 1289	n:2680000
ATXN3L   2680000 perm   3723 sec   (720 perm/sec)   p_kst 4.809701e-04   p_cons 5.218433e-01   p_joint 7.470149e-04

Joint ci ratio: 8.738111e-02	ci left: 7.149110e-04	ci right 7.805952e-04	k: 2010	n:2690000
Cons ci ratio: 2.287766e-03	ci left: 5.212612e-01	ci right 5.224555e-01	k: 1403799	n:2690000
KS ci ratio: 1.089047e-01	ci left: 4.551908e-04	ci right 5.079760e-04	k: 1294	n:2690000
ATXN3L   2690000 perm   3748 sec   (718 perm/sec)   p_kst 4.810409e-04   p_cons 5.218584e-01   p_joint 7.472119e-04

Joint ci ratio: 8.716462e-02	ci left: 7.158861e-04	ci right 7.814886e-04	k: 2020	n:2700000
Cons ci ratio: 2.283603e-03	ci left: 5.212454e-01	ci right 5.224375e-01	k: 1408972	n:2700000
KS ci ratio: 1.086532e-01	ci left: 4.556667e-04	ci right 5.083772e-04	k: 1300	n:2700000
ATXN3L   2700000 perm   3773 sec   (716 perm/sec)   p_kst 4.814815e-04   p_cons 5.218415e-01   p_joint 7.481481e-04

Joint ci ratio: 8.701406e-02	ci left: 7.157712e-04	ci right 7.812442e-04	k: 2027	n:2710000
Cons ci ratio: 2.279432e-03	ci left: 5.212364e-01	ci right 5.224263e-01	k: 1414163	n:2710000
KS ci ratio: 1.084450e-01	ci left: 4.557802e-04	ci right 5.083964e-04	k: 1305	n:2710000
ATXN3L   2710000 perm   3798 sec   (713 perm/sec)   p_kst 4.815498e-04   p_cons 5.218314e-01   p_joint 7.479705e-04

Joint ci ratio: 8.680028e-02	ci left: 7.167363e-04	ci right 7.821283e-04	k: 2037	n:2720000
Cons ci ratio: 2.275292e-03	ci left: 5.212256e-01	ci right 5.224133e-01	k: 1419349	n:2720000
KS ci ratio: 1.081555e-01	ci left: 4.566083e-04	ci right 5.091705e-04	k: 1312	n:2720000
ATXN3L   2720000 perm   3824 sec   (711 perm/sec)   p_kst 4.823529e-04   p_cons 5.218195e-01   p_joint 7.488971e-04

Joint ci ratio: 8.817496e-02	ci left: 6.915384e-04	ci right 7.556822e-04	k: 1974	n:2730000
Cons ci ratio: 2.271088e-03	ci left: 5.212340e-01	ci right 5.224194e-01	k: 1424587	n:2730000
KS ci ratio: 1.077867e-01	ci left: 4.581435e-04	ci right 5.106911e-04	k: 1321	n:2730000
ATXN3L   2730000 perm   3851 sec   (709 perm/sec)   p_kst 4.838828e-04   p_cons 5.218267e-01   p_joint 7.230769e-04

Joint ci ratio: 8.565159e-02	ci left: 7.311450e-04	ci right 7.969248e-04	k: 2092	n:2740000
Cons ci ratio: 2.266967e-03	ci left: 5.212291e-01	ci right 5.224124e-01	k: 1429789	n:2740000
KS ci ratio: 1.074216e-01	ci left: 4.596677e-04	ci right 5.122003e-04	k: 1330	n:2740000
ATXN3L   2740000 perm   3877 sec   (707 perm/sec)   p_kst 4.854015e-04   p_cons 5.218208e-01   p_joint 7.635036e-04

Joint ci ratio: 8.690739e-02	ci left: 7.071385e-04	ci right 7.717385e-04	k: 2032	n:2750000
Cons ci ratio: 2.262908e-03	ci left: 5.212156e-01	ci right 5.223967e-01	k: 1434967	n:2750000
KS ci ratio: 1.071001e-01	ci left: 4.608273e-04	ci right 5.133248e-04	k: 1338	n:2750000
ATXN3L   2750000 perm   3903 sec   (705 perm/sec)   p_kst 4.865455e-04   p_cons 5.218062e-01   p_joint 7.389091e-04

Joint ci ratio: 8.667317e-02	ci left: 7.084754e-04	ci right 7.730143e-04	k: 2043	n:2760000
Cons ci ratio: 2.258790e-03	ci left: 5.212199e-01	ci right 5.223989e-01	k: 1440194	n:2760000
KS ci ratio: 1.067815e-01	ci left: 4.619786e-04	ci right 5.144410e-04	k: 1346	n:2760000
ATXN3L   2760000 perm   3929 sec   (703 perm/sec)   p_kst 4.876812e-04   p_cons 5.218094e-01   p_joint 7.402174e-04

Joint ci ratio: 8.652514e-02	ci left: 7.083901e-04	ci right 7.728054e-04	k: 2050	n:2770000
Cons ci ratio: 2.254626e-03	ci left: 5.212393e-01	ci right 5.224162e-01	k: 1445463	n:2770000
KS ci ratio: 1.065445e-01	ci left: 4.624191e-04	ci right 5.148076e-04	k: 1352	n:2770000
ATXN3L   2770000 perm   3955 sec   (700 perm/sec)   p_kst 4.880866e-04   p_cons 5.218278e-01   p_joint 7.400722e-04

Joint ci ratio: 8.625214e-02	ci left: 7.104172e-04	ci right 7.748028e-04	k: 2063	n:2780000
Cons ci ratio: 2.250638e-03	ci left: 5.212248e-01	ci right 5.223996e-01	k: 1450638	n:2780000
KS ci ratio: 1.061918e-01	ci left: 4.639071e-04	ci right 5.162792e-04	k: 1361	n:2780000
ATXN3L   2780000 perm   3983 sec   (698 perm/sec)   p_kst 4.895683e-04   p_cons 5.218122e-01   p_joint 7.420863e-04

Joint ci ratio: 8.608546e-02	ci left: 7.106765e-04	ci right 7.749549e-04	k: 2071	n:2790000
Cons ci ratio: 2.246451e-03	ci left: 5.212592e-01	ci right 5.224318e-01	k: 1455949	n:2790000
KS ci ratio: 1.059974e-01	ci left: 4.639889e-04	ci right 5.162684e-04	k: 1366	n:2790000
ATXN3L   2790000 perm   4009 sec   (696 perm/sec)   p_kst 4.896057e-04   p_cons 5.218455e-01   p_joint 7.422939e-04

Joint ci ratio: 8.591974e-02	ci left: 7.109341e-04	ci right 7.751057e-04	k: 2079	n:2800000
Cons ci ratio: 2.242480e-03	ci left: 5.212504e-01	ci right 5.224210e-01	k: 1461140	n:2800000
KS ci ratio: 1.057270e-01	ci left: 4.647656e-04	ci right 5.169908e-04	k: 1373	n:2800000
ATXN3L   2800000 perm   4036 sec   (694 perm/sec)   p_kst 4.903571e-04   p_cons 5.218357e-01   p_joint 7.425000e-04

Joint ci ratio: 8.585791e-02	ci left: 7.094487e-04	ci right 7.734379e-04	k: 2082	n:2810000
Cons ci ratio: 2.238432e-03	ci left: 5.212634e-01	ci right 5.224319e-01	k: 1466392	n:2810000
KS ci ratio: 1.056887e-01	ci left: 4.634581e-04	ci right 5.155162e-04	k: 1374	n:2810000
ATXN3L   2810000 perm   4062 sec   (692 perm/sec)   p_kst 4.889680e-04   p_cons 5.218477e-01   p_joint 7.409253e-04

Joint ci ratio: 8.575509e-02	ci left: 7.086679e-04	ci right 7.725063e-04	k: 2087	n:2820000
Cons ci ratio: 2.234518e-03	ci left: 5.212515e-01	ci right 5.224179e-01	k: 1471574	n:2820000
KS ci ratio: 1.055353e-01	ci left: 4.631956e-04	ci right 5.151441e-04	k: 1378	n:2820000
ATXN3L   2820000 perm   4088 sec   (690 perm/sec)   p_kst 4.886525e-04   p_cons 5.218348e-01   p_joint 7.400709e-04

Joint ci ratio: 8.565263e-02	ci left: 7.078927e-04	ci right 7.715813e-04	k: 2092	n:2830000
Cons ci ratio: 2.230603e-03	ci left: 5.212443e-01	ci right 5.224086e-01	k: 1476769	n:2830000
KS ci ratio: 1.055354e-01	ci left: 4.615588e-04	ci right 5.133238e-04	k: 1378	n:2830000
ATXN3L   2830000 perm   4115 sec   (688 perm/sec)   p_kst 4.869258e-04   p_cons 5.218265e-01   p_joint 7.392226e-04

Joint ci ratio: 8.740459e-02	ci left: 6.768066e-04	ci right 7.390075e-04	k: 2009	n:2840000
Cons ci ratio: 2.226651e-03	ci left: 5.212502e-01	ci right 5.224124e-01	k: 1482001	n:2840000
KS ci ratio: 1.053827e-01	ci left: 4.613049e-04	ci right 5.129619e-04	k: 1382	n:2840000
ATXN3L   2840000 perm   4142 sec   (686 perm/sec)   p_kst 4.866197e-04   p_cons 5.218313e-01   p_joint 7.073944e-04

Joint ci ratio: 8.718793e-02	ci left: 6.778640e-04	ci right 7.399998e-04	k: 2019	n:2850000
Cons ci ratio: 2.222803e-03	ci left: 5.212374e-01	ci right 5.223976e-01	k: 1487180	n:2850000
KS ci ratio: 1.049659e-01	ci left: 4.634444e-04	ci right 5.151231e-04	k: 1393	n:2850000
ATXN3L   2850000 perm   4169 sec   (684 perm/sec)   p_kst 4.887719e-04   p_cons 5.218175e-01   p_joint 7.084211e-04

Joint ci ratio: 8.705874e-02	ci left: 6.775461e-04	ci right 7.395560e-04	k: 2025	n:2860000
Cons ci ratio: 2.218966e-03	ci left: 5.212265e-01	ci right 5.223847e-01	k: 1492364	n:2860000
KS ci ratio: 1.048157e-01	ci left: 4.631859e-04	ci right 5.147573e-04	k: 1397	n:2860000
ATXN3L   2860000 perm   4197 sec   (681 perm/sec)   p_kst 4.884615e-04   p_cons 5.218056e-01   p_joint 7.080420e-04

Joint ci ratio: 8.133411e-02	ci left: 7.758126e-04	ci right 8.419260e-04	k: 2320	n:2870000
Cons ci ratio: 2.215269e-03	ci left: 5.211888e-01	ci right 5.223450e-01	k: 1497471	n:2870000
KS ci ratio: 1.045542e-01	ci left: 4.639472e-04	ci right 5.154666e-04	k: 1404	n:2870000
ATXN3L   2870000 perm   4225 sec   (679 perm/sec)   p_kst 4.891986e-04   p_cons 5.217669e-01   p_joint 8.083624e-04

Joint ci ratio: 8.117687e-02	ci left: 7.761803e-04	ci right 8.421911e-04	k: 2329	n:2880000
Cons ci ratio: 2.211404e-03	ci left: 5.211934e-01	ci right 5.223475e-01	k: 1502699	n:2880000
KS ci ratio: 1.043687e-01	ci left: 4.640270e-04	ci right 5.154582e-04	k: 1409	n:2880000
ATXN3L   2880000 perm   4252 sec   (677 perm/sec)   p_kst 4.892361e-04   p_cons 5.217705e-01   p_joint 8.086806e-04

Joint ci ratio: 8.103787e-02	ci left: 7.762066e-04	ci right 8.421013e-04	k: 2337	n:2890000
Cons ci ratio: 2.207767e-03	ci left: 5.211509e-01	ci right 5.223031e-01	k: 1507791	n:2890000
KS ci ratio: 1.041841e-01	ci left: 4.641064e-04	ci right 5.154498e-04	k: 1414	n:2890000
ATXN3L   2890000 perm   4280 sec   (675 perm/sec)   p_kst 4.892734e-04   p_cons 5.217270e-01   p_joint 8.086505e-04

Joint ci ratio: 8.322179e-02	ci left: 7.326620e-04	ci right 7.966175e-04	k: 2216	n:2900000
Cons ci ratio: 2.203938e-03	ci left: 5.211563e-01	ci right 5.223065e-01	k: 1513021	n:2900000
KS ci ratio: 1.041106e-01	ci left: 4.631777e-04	ci right 5.143800e-04	k: 1416	n:2900000
ATXN3L   2900000 perm   4307 sec   (673 perm/sec)   p_kst 4.882759e-04   p_cons 5.217314e-01   p_joint 7.641379e-04

Joint ci ratio: 8.309073e-02	ci left: 7.324997e-04	ci right 7.963355e-04	k: 2223	n:2910000
Cons ci ratio: 2.200039e-03	ci left: 5.211819e-01	ci right 5.223301e-01	k: 1518310	n:2910000
KS ci ratio: 1.039274e-01	ci left: 4.632595e-04	ci right 5.143753e-04	k: 1421	n:2910000
ATXN3L   2910000 perm   4334 sec   (671 perm/sec)   p_kst 4.883162e-04   p_cons 5.217560e-01   p_joint 7.639175e-04

Joint ci ratio: 8.363835e-02	ci left: 7.202665e-04	ci right 7.834701e-04	k: 2194	n:2920000
Cons ci ratio: 2.196300e-03	ci left: 5.211758e-01	ci right 5.223221e-01	k: 1523507	n:2920000
KS ci ratio: 1.037816e-01	ci left: 4.630073e-04	ci right 5.140192e-04	k: 1425	n:2920000
ATXN3L   2920000 perm   4361 sec   (670 perm/sec)   p_kst 4.880137e-04   p_cons 5.217490e-01   p_joint 7.513699e-04

Joint ci ratio: 8.379140e-02	ci left: 7.151349e-04	ci right 7.780087e-04	k: 2186	n:2930000
Cons ci ratio: 2.192455e-03	ci left: 5.211981e-01	ci right 5.223424e-01	k: 1528787	n:2930000
KS ci ratio: 1.034916e-01	ci left: 4.640867e-04	ci right 5.150660e-04	k: 1433	n:2930000
ATXN3L   2930000 perm   4388 sec   (668 perm/sec)   p_kst 4.890785e-04   p_cons 5.217703e-01   p_joint 7.460751e-04

Joint ci ratio: 8.361950e-02	ci left: 7.156997e-04	ci right 7.784877e-04	k: 2195	n:2940000
Cons ci ratio: 2.188572e-03	ci left: 5.212336e-01	ci right 5.223759e-01	k: 1534106	n:2940000
KS ci ratio: 1.032758e-01	ci left: 4.644962e-04	ci right 5.154076e-04	k: 1439	n:2940000
ATXN3L   2940000 perm   4416 sec   (666 perm/sec)   p_kst 4.894558e-04   p_cons 5.218048e-01   p_joint 7.465986e-04

Joint ci ratio: 8.341080e-02	ci left: 7.169245e-04	ci right 7.796554e-04	k: 2206	n:2950000
Cons ci ratio: 2.184938e-03	ci left: 5.212166e-01	ci right 5.223570e-01	k: 1539271	n:2950000
KS ci ratio: 1.030256e-01	ci left: 4.652333e-04	ci right 5.160945e-04	k: 1446	n:2950000
ATXN3L   2950000 perm   4444 sec   (664 perm/sec)   p_kst 4.901695e-04   p_cons 5.217868e-01   p_joint 7.477966e-04

Joint ci ratio: 8.324123e-02	ci left: 7.174797e-04	ci right 7.801253e-04	k: 2215	n:2960000
Cons ci ratio: 2.181287e-03	ci left: 5.212078e-01	ci right 5.223462e-01	k: 1544460	n:2960000
KS ci ratio: 1.028127e-01	ci left: 4.656365e-04	ci right 5.164301e-04	k: 1452	n:2960000
ATXN3L   2960000 perm   4471 sec   (662 perm/sec)   p_kst 4.905405e-04   p_cons 5.217770e-01   p_joint 7.483108e-04

Joint ci ratio: 8.297943e-02	ci left: 7.196798e-04	ci right 7.823103e-04	k: 2229	n:2970000
Cons ci ratio: 2.177629e-03	ci left: 5.212048e-01	ci right 5.223413e-01	k: 1549666	n:2970000
KS ci ratio: 1.024606e-01	ci left: 4.673492e-04	ci right 5.181447e-04	k: 1462	n:2970000
ATXN3L   2970000 perm   4499 sec   (660 perm/sec)   p_kst 4.922559e-04   p_cons 5.217731e-01   p_joint 7.505051e-04

Joint ci ratio: 8.290516e-02	ci left: 7.185792e-04	ci right 7.810553e-04	k: 2233	n:2980000
Cons ci ratio: 2.174049e-03	ci left: 5.211880e-01	ci right 5.223227e-01	k: 1554831	n:2980000
KS ci ratio: 1.023557e-01	ci left: 4.667619e-04	ci right 5.174384e-04	k: 1465	n:2980000
ATXN3L   2980000 perm   4527 sec   (658 perm/sec)   p_kst 4.916107e-04   p_cons 5.217554e-01   p_joint 7.493289e-04

Joint ci ratio: 8.275711e-02	ci left: 7.187961e-04	ci right 7.811740e-04	k: 2241	n:2990000
Cons ci ratio: 2.170392e-03	ci left: 5.211931e-01	ci right 5.223259e-01	k: 1560061	n:2990000
KS ci ratio: 1.021122e-01	ci left: 4.674821e-04	ci right 5.181088e-04	k: 1472	n:2990000
ATXN3L   2990000 perm   4555 sec   (656 perm/sec)   p_kst 4.923077e-04   p_cons 5.217595e-01   p_joint 7.494983e-04

Joint ci ratio: 8.266502e-02	ci left: 7.180323e-04	ci right 7.802712e-04	k: 2246	n:3000000
Cons ci ratio: 2.166680e-03	ci left: 5.212152e-01	ci right 5.223461e-01	k: 1565342	n:3000000
KS ci ratio: 1.020084e-01	ci left: 4.668983e-04	ci right 5.174073e-04	k: 1475	n:3000000
ATXN3L   3000000 perm   4582 sec   (655 perm/sec)   p_kst 4.916667e-04   p_cons 5.217807e-01   p_joint 7.486667e-04

Joint ci ratio: 8.253656e-02	ci left: 7.179243e-04	ci right 7.800526e-04	k: 2253	n:3010000
Cons ci ratio: 2.163148e-03	ci left: 5.211999e-01	ci right 5.223289e-01	k: 1570511	n:3010000
KS ci ratio: 1.018361e-01	ci left: 4.669659e-04	ci right 5.173918e-04	k: 1480	n:3010000
ATXN3L   3010000 perm   4610 sec   (653 perm/sec)   p_kst 4.916944e-04   p_cons 5.217645e-01   p_joint 7.485050e-04

Joint ci ratio: 8.242695e-02	ci left: 7.174929e-04	ci right 7.794974e-04	k: 2259	n:3020000
Cons ci ratio: 2.159571e-03	ci left: 5.211993e-01	ci right 5.223264e-01	k: 1575724	n:3020000
KS ci ratio: 1.017674e-01	ci left: 4.660651e-04	ci right 5.163577e-04	k: 1482	n:3020000
ATXN3L   3020000 perm   4638 sec   (651 perm/sec)   p_kst 4.907285e-04   p_cons 5.217629e-01   p_joint 7.480132e-04

Joint ci ratio: 8.226329e-02	ci left: 7.180340e-04	ci right 7.799562e-04	k: 2268	n:3030000
Cons ci ratio: 2.155944e-03	ci left: 5.212143e-01	ci right 5.223395e-01	k: 1580984	n:3030000
KS ci ratio: 1.015622e-01	ci left: 4.664567e-04	ci right 5.166841e-04	k: 1488	n:3030000
ATXN3L   3030000 perm   4666 sec   (649 perm/sec)   p_kst 4.910891e-04   p_cons 5.217769e-01   p_joint 7.485149e-04

Joint ci ratio: 8.219092e-02	ci left: 7.169608e-04	ci right 7.787334e-04	k: 2272	n:3040000
Cons ci ratio: 2.152281e-03	ci left: 5.212416e-01	ci right 5.223650e-01	k: 1586282	n:3040000
KS ci ratio: 1.015622e-01	ci left: 4.649223e-04	ci right 5.149845e-04	k: 1488	n:3040000
ATXN3L   3040000 perm   4696 sec   (647 perm/sec)   p_kst 4.894737e-04   p_cons 5.218033e-01   p_joint 7.473684e-04

Joint ci ratio: 8.202867e-02	ci left: 7.175004e-04	ci right 7.791916e-04	k: 2281	n:3050000
Cons ci ratio: 2.148746e-03	ci left: 5.212435e-01	ci right 5.223650e-01	k: 1591503	n:3050000
KS ci ratio: 1.013243e-01	ci left: 4.656348e-04	ci right 5.156493e-04	k: 1495	n:3050000
ATXN3L   3050000 perm   4725 sec   (645 perm/sec)   p_kst 4.901639e-04   p_cons 5.218043e-01   p_joint 7.478689e-04

Joint ci ratio: 8.356363e-02	ci left: 6.885925e-04	ci right 7.489601e-04	k: 2198	n:3060000
Cons ci ratio: 2.145225e-03	ci left: 5.212460e-01	ci right 5.223657e-01	k: 1596726	n:3060000
KS ci ratio: 1.011217e-01	ci left: 4.660243e-04	ci right 5.159746e-04	k: 1501	n:3060000
ATXN3L   3060000 perm   4756 sec   (643 perm/sec)   p_kst 4.905229e-04   p_cons 5.218059e-01   p_joint 7.183007e-04

Joint ci ratio: 8.337423e-02	ci left: 6.895389e-04	ci right 7.498458e-04	k: 2208	n:3070000
Cons ci ratio: 2.141665e-03	ci left: 5.212616e-01	ci right 5.223794e-01	k: 1601989	n:3070000
KS ci ratio: 1.009538e-01	ci left: 4.660938e-04	ci right 5.159637e-04	k: 1506	n:3070000
ATXN3L   3070000 perm   4785 sec   (642 perm/sec)   p_kst 4.905537e-04   p_cons 5.218205e-01   p_joint 7.192182e-04

Joint ci ratio: 8.322366e-02	ci left: 6.898434e-04	ci right 7.500627e-04	k: 2216	n:3080000
Cons ci ratio: 2.138179e-03	ci left: 5.212640e-01	ci right 5.223801e-01	k: 1607212	n:3080000
KS ci ratio: 1.007201e-01	ci left: 4.667960e-04	ci right 5.166185e-04	k: 1513	n:3080000
ATXN3L   3080000 perm   4813 sec   (640 perm/sec)   p_kst 4.912338e-04   p_cons 5.218221e-01   p_joint 7.194805e-04

Joint ci ratio: 8.313000e-02	ci left: 6.891954e-04	ci right 7.492871e-04	k: 2221	n:3090000
Cons ci ratio: 2.134692e-03	ci left: 5.212707e-01	ci right 5.223849e-01	k: 1612448	n:3090000
KS ci ratio: 1.006870e-01	ci left: 4.656008e-04	ci right 5.152784e-04	k: 1514	n:3090000
ATXN3L   3090000 perm   4842 sec   (638 perm/sec)   p_kst 4.899676e-04   p_cons 5.218278e-01   p_joint 7.187702e-04

Joint ci ratio: 8.298074e-02	ci left: 6.894992e-04	ci right 7.495043e-04	k: 2229	n:3100000
Cons ci ratio: 2.131322e-03	ci left: 5.212538e-01	ci right 5.223662e-01	k: 1617611	n:3100000
KS ci ratio: 1.005874e-01	ci left: 4.650422e-04	ci right 5.146083e-04	k: 1517	n:3100000
ATXN3L   3100000 perm   4871 sec   (636 perm/sec)   p_kst 4.893548e-04   p_cons 5.218100e-01   p_joint 7.190323e-04

Joint ci ratio: 7.610198e-02	ci left: 8.199665e-04	ci right 8.851487e-04	k: 2650	n:3110000
Cons ci ratio: 2.127837e-03	ci left: 5.212678e-01	ci right 5.223785e-01	k: 1622870	n:3110000
KS ci ratio: 1.003892e-01	ci left: 4.654277e-04	ci right 5.149313e-04	k: 1523	n:3110000
ATXN3L   3110000 perm   4905 sec   (634 perm/sec)   p_kst 4.897106e-04   p_cons 5.218232e-01   p_joint 8.520900e-04

Joint ci ratio: 7.601604e-02	ci left: 8.192249e-04	ci right 8.842714e-04	k: 2656	n:3120000
Cons ci ratio: 2.124368e-03	ci left: 5.212818e-01	ci right 5.223906e-01	k: 1628129	n:3120000
KS ci ratio: 1.002906e-01	ci left: 4.648733e-04	ci right 5.142666e-04	k: 1526	n:3120000
ATXN3L   3120000 perm   4934 sec   (632 perm/sec)   p_kst 4.891026e-04   p_cons 5.218362e-01   p_joint 8.512821e-04

Joint ci ratio: 7.591612e-02	ci left: 8.188015e-04	ci right 8.837251e-04	k: 2663	n:3130000
Cons ci ratio: 2.120852e-03	ci left: 5.213110e-01	ci right 5.224181e-01	k: 1633436	n:3130000
KS ci ratio: 1.001922e-01	ci left: 4.643225e-04	ci right 5.136060e-04	k: 1529	n:3130000
ATXN3L   3130000 perm   4964 sec   (631 perm/sec)   p_kst 4.884984e-04   p_cons 5.218645e-01   p_joint 8.507987e-04

Joint ci ratio: 7.647857e-02	ci left: 8.040098e-04	ci right 8.682540e-04	k: 2624	n:3140000
Cons ci ratio: 2.117566e-03	ci left: 5.212897e-01	ci right 5.223950e-01	k: 1638585	n:3140000
KS ci ratio: 9.999635e-02	ci left: 4.647068e-04	ci right 5.139290e-04	k: 1535	n:3140000
ATXN3L   3140000 perm   4993 sec   (629 perm/sec)   p_kst 4.888535e-04   p_cons 5.218424e-01   p_joint 8.356688e-04

Outputting figure to mutsig2_images.part000000000014/ATXN3L.5_1072_3140000_0.00048885_0.52184_0.00083567.png
                gene_name: ATXN3L
               theta_stop: 0.100 
                    nperm: 3140000 
                     p_ks: 0.00049 
        ci_ks_bounds_left: 0.00046 
       ci_ks_bounds_right: 0.00051 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.00084 
     ci_joint_bounds_left: 0.00080 
    ci_joint_bounds_right: 0.00087 

Current progress: 27 percent done.
AZGP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
AZGP1   10000 perm   2 sec   (5441 perm/sec)   p_kst 1.119000e-01   p_cons 1.590000e-01   p_joint 1.333000e-01

Joint ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
Cons ci ratio: 6.446006e-02	ci left: 1.509964e-01	ci right 1.611038e-01	k: 3120	n:20000
KS ci ratio: 7.943217e-02	ci left: 1.042218e-01	ci right 1.128924e-01	k: 2170	n:20000
AZGP1   20000 perm   4 sec   (4845 perm/sec)   p_kst 1.085000e-01   p_cons 1.560000e-01   p_joint 8.890000e-02

Outputting figure to mutsig2_images.part000000000014/AZGP1.5_913_20000_0.1085_0.156_0.0889.png
                gene_name: AZGP1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 29 percent done.
BAAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
Cons ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
KS ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
BAAT   10000 perm   2 sec   (5326 perm/sec)   p_kst 6.899000e-01   p_cons 5.945000e-01   p_joint 7.900000e-01

Outputting figure to mutsig2_images.part000000000014/BAAT.5_1269_10000_0.6899_0.5945_0.79.png
                gene_name: BAAT
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 30 percent done.
ATRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
KS ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
ATRIP   10000 perm   2 sec   (5446 perm/sec)   p_kst 4.996000e-01   p_cons 8.300000e-03   p_joint 3.600000e-02

Joint ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
Cons ci ratio: 2.976019e-01	ci left: 7.320842e-03	ci right 9.925044e-03	k: 171	n:20000
KS ci ratio: 2.789724e-02	ci left: 4.897965e-01	ci right 5.037044e-01	k: 9935	n:20000
ATRIP   20000 perm   4 sec   (4841 perm/sec)   p_kst 4.967500e-01   p_cons 8.550000e-03   p_joint 5.645000e-02

Joint ci ratio: 1.123935e-01	ci left: 3.677252e-02	ci right 4.118400e-02	k: 1168	n:30000
Cons ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
KS ci ratio: 2.282037e-02	ci left: 4.901596e-01	ci right 5.015079e-01	k: 14875	n:30000
ATRIP   30000 perm   7 sec   (4609 perm/sec)   p_kst 4.958333e-01   p_cons 8.400000e-03   p_joint 3.893333e-02

Joint ci ratio: 1.042738e-01	ci left: 3.234286e-02	ci right 3.592519e-02	k: 1364	n:40000
Cons ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
KS ci ratio: 1.977645e-02	ci left: 4.905883e-01	ci right 5.004124e-01	k: 19820	n:40000
ATRIP   40000 perm   9 sec   (4455 perm/sec)   p_kst 4.955000e-01   p_cons 8.500000e-03   p_joint 3.410000e-02

Joint ci ratio: 1.076381e-01	ci left: 2.444743e-02	ci right 2.724798e-02	k: 1291	n:50000
Cons ci ratio: 1.897871e-01	ci left: 7.656790e-03	ci right 9.281053e-03	k: 422	n:50000
KS ci ratio: 1.761741e-02	ci left: 4.931277e-01	ci right 5.019126e-01	k: 24876	n:50000
ATRIP   50000 perm   12 sec   (4327 perm/sec)   p_kst 4.975200e-01   p_cons 8.440000e-03   p_joint 2.582000e-02

Joint ci ratio: 9.540489e-02	ci left: 2.605951e-02	ci right 2.868647e-02	k: 1641	n:60000
Cons ci ratio: 1.756401e-01	ci left: 7.509881e-03	ci right 8.971618e-03	k: 493	n:60000
KS ci ratio: 1.605690e-02	ci left: 4.943078e-01	ci right 5.023257e-01	k: 29899	n:60000
ATRIP   60000 perm   14 sec   (4219 perm/sec)   p_kst 4.983167e-01   p_cons 8.216667e-03   p_joint 2.735000e-02

Joint ci ratio: 9.233732e-02	ci left: 2.393979e-02	ci right 2.627123e-02	k: 1756	n:70000
Cons ci ratio: 1.779341e-01	ci left: 6.272834e-03	ci right 7.511429e-03	k: 481	n:70000
KS ci ratio: 1.488505e-02	ci left: 4.939605e-01	ci right 5.013825e-01	k: 34837	n:70000
ATRIP   70000 perm   17 sec   (4126 perm/sec)   p_kst 4.976714e-01   p_cons 6.871429e-03   p_joint 2.508571e-02

Joint ci ratio: 9.372041e-02	ci left: 2.039613e-02	ci right 2.241379e-02	k: 1711	n:80000
Cons ci ratio: 1.631718e-01	ci left: 6.577834e-03	ci right 7.758331e-03	k: 572	n:80000
KS ci ratio: 1.395325e-02	ci left: 4.931417e-01	ci right 5.000835e-01	k: 39729	n:80000
ATRIP   80000 perm   20 sec   (4039 perm/sec)   p_kst 4.966125e-01   p_cons 7.150000e-03   p_joint 2.138750e-02

Joint ci ratio: 7.343508e-02	ci left: 2.956076e-02	ci right 3.182518e-02	k: 2761	n:90000
Cons ci ratio: 1.438018e-01	ci left: 7.599732e-03	ci right 8.787850e-03	k: 736	n:90000
KS ci ratio: 1.315531e-02	ci left: 4.933392e-01	ci right 4.998833e-01	k: 44695	n:90000
ATRIP   90000 perm   23 sec   (3957 perm/sec)   p_kst 4.966111e-01   p_cons 8.177778e-03   p_joint 3.067778e-02

Joint ci ratio: 7.211403e-02	ci left: 2.766404e-02	ci right 2.974342e-02	k: 2869	n:100000
Cons ci ratio: 1.465911e-01	ci left: 6.579310e-03	ci right 7.629585e-03	k: 709	n:100000
KS ci ratio: 1.251201e-02	ci left: 4.922363e-01	ci right 4.984439e-01	k: 49534	n:100000
ATRIP   100000 perm   26 sec   (3885 perm/sec)   p_kst 4.953400e-01   p_cons 7.090000e-03   p_joint 2.869000e-02

Joint ci ratio: 7.248360e-02	ci left: 2.496039e-02	ci right 2.684654e-02	k: 2848	n:110000
Cons ci ratio: 1.400403e-01	ci left: 6.577212e-03	ci right 7.576315e-03	k: 777	n:110000
KS ci ratio: 1.192594e-02	ci left: 4.925410e-01	ci right 4.984593e-01	k: 54505	n:110000
ATRIP   110000 perm   29 sec   (3815 perm/sec)   p_kst 4.955000e-01   p_cons 7.063636e-03   p_joint 2.589091e-02

Joint ci ratio: 6.965127e-02	ci left: 2.482020e-02	ci right 2.661949e-02	k: 3085	n:120000
Cons ci ratio: 1.344561e-01	ci left: 6.560225e-03	ci right 7.513832e-03	k: 843	n:120000
KS ci ratio: 1.141442e-02	ci left: 4.928338e-01	ci right 4.984998e-01	k: 59480	n:120000
ATRIP   120000 perm   32 sec   (3750 perm/sec)   p_kst 4.956667e-01   p_cons 7.025000e-03   p_joint 2.570833e-02

Joint ci ratio: 7.505101e-02	ci left: 1.978188e-02	ci right 2.133192e-02	k: 2671	n:130000
Cons ci ratio: 1.297061e-01	ci left: 6.524189e-03	ci right 7.436472e-03	k: 906	n:130000
KS ci ratio: 1.095696e-02	ci left: 4.933861e-01	ci right 4.988295e-01	k: 64494	n:130000
ATRIP   130000 perm   35 sec   (3684 perm/sec)   p_kst 4.961077e-01   p_cons 6.969231e-03   p_joint 2.054615e-02

Joint ci ratio: 7.313658e-02	ci left: 1.937124e-02	ci right 2.084873e-02	k: 2814	n:140000
Cons ci ratio: 1.256876e-01	ci left: 6.466130e-03	ci right 7.340194e-03	k: 965	n:140000
KS ci ratio: 1.056022e-02	ci left: 4.933989e-01	ci right 4.986441e-01	k: 69443	n:140000
ATRIP   140000 perm   39 sec   (3623 perm/sec)   p_kst 4.960214e-01   p_cons 6.892857e-03   p_joint 2.010000e-02

Joint ci ratio: 7.283145e-02	ci left: 1.825615e-02	ci right 1.964253e-02	k: 2841	n:150000
Cons ci ratio: 1.217817e-01	ci left: 6.442051e-03	ci right 7.283847e-03	k: 1028	n:150000
KS ci ratio: 1.019661e-02	ci left: 4.937599e-01	ci right 4.988270e-01	k: 74444	n:150000
ATRIP   150000 perm   42 sec   (3565 perm/sec)   p_kst 4.962933e-01   p_cons 6.853333e-03   p_joint 1.894000e-02

Joint ci ratio: 7.223119e-02	ci left: 1.742170e-02	ci right 1.873335e-02	k: 2891	n:160000
Cons ci ratio: 1.175700e-01	ci left: 6.494153e-03	ci right 7.311369e-03	k: 1103	n:160000
KS ci ratio: 9.865418e-03	ci left: 4.942158e-01	ci right 4.991218e-01	k: 79467	n:160000
ATRIP   160000 perm   46 sec   (3508 perm/sec)   p_kst 4.966687e-01   p_cons 6.893750e-03   p_joint 1.806875e-02

Joint ci ratio: 6.533642e-02	ci left: 2.005737e-02	ci right 2.141786e-02	k: 3524	n:170000
Cons ci ratio: 1.141578e-01	ci left: 6.494840e-03	ci right 7.286823e-03	k: 1170	n:170000
KS ci ratio: 9.574661e-03	ci left: 4.940910e-01	ci right 4.988503e-01	k: 84400	n:170000
ATRIP   170000 perm   49 sec   (3453 perm/sec)   p_kst 4.964706e-01   p_cons 6.882353e-03   p_joint 2.072941e-02

Joint ci ratio: 6.146102e-02	ci left: 2.142032e-02	ci right 2.278402e-02	k: 3977	n:180000
Cons ci ratio: 1.113437e-01	ci left: 6.457941e-03	ci right 7.224738e-03	k: 1230	n:180000
KS ci ratio: 9.303321e-03	ci left: 4.942431e-01	ci right 4.988682e-01	k: 89380	n:180000
ATRIP   180000 perm   53 sec   (3401 perm/sec)   p_kst 4.965556e-01   p_cons 6.833333e-03   p_joint 2.209444e-02

Joint ci ratio: 6.175972e-02	ci left: 2.012151e-02	ci right 2.140896e-02	k: 3944	n:190000
Cons ci ratio: 1.083904e-01	ci left: 6.466111e-03	ci right 7.212213e-03	k: 1298	n:190000
KS ci ratio: 9.050956e-03	ci left: 4.945387e-01	ci right 4.990403e-01	k: 94390	n:190000
ATRIP   190000 perm   57 sec   (3349 perm/sec)   p_kst 4.967895e-01   p_cons 6.831579e-03   p_joint 2.075789e-02

Joint ci ratio: 5.660183e-02	ci left: 2.275669e-02	ci right 2.408718e-02	k: 4683	n:200000
Cons ci ratio: 1.056991e-01	ci left: 6.468837e-03	ci right 7.195568e-03	k: 1365	n:200000
KS ci ratio: 8.828130e-03	ci left: 4.942363e-01	ci right 4.986238e-01	k: 99286	n:200000
ATRIP   200000 perm   61 sec   (3299 perm/sec)   p_kst 4.964300e-01   p_cons 6.825000e-03   p_joint 2.341500e-02

Joint ci ratio: 5.728805e-02	ci left: 2.118435e-02	ci right 2.243842e-02	k: 4579	n:210000
Cons ci ratio: 1.032352e-01	ci left: 6.466871e-03	ci right 7.175417e-03	k: 1431	n:210000
KS ci ratio: 8.613923e-03	ci left: 4.943735e-01	ci right 4.986551e-01	k: 104268	n:210000
ATRIP   210000 perm   65 sec   (3253 perm/sec)   p_kst 4.965143e-01   p_cons 6.814286e-03   p_joint 2.180476e-02

Joint ci ratio: 5.813249e-02	ci left: 1.966099e-02	ci right 2.084261e-02	k: 4454	n:220000
Cons ci ratio: 1.011742e-01	ci left: 6.434243e-03	ci right 7.124303e-03	k: 1490	n:220000
KS ci ratio: 8.413977e-03	ci left: 4.945358e-01	ci right 4.987189e-01	k: 109258	n:220000
ATRIP   220000 perm   69 sec   (3209 perm/sec)   p_kst 4.966273e-01   p_cons 6.772727e-03   p_joint 2.024545e-02

Joint ci ratio: 5.846041e-02	ci left: 1.861307e-02	ci right 1.973822e-02	k: 4409	n:230000
Cons ci ratio: 9.891109e-02	ci left: 6.446989e-03	ci right 7.122052e-03	k: 1559	n:230000
KS ci ratio: 8.233634e-03	ci left: 4.943024e-01	ci right 4.983934e-01	k: 114160	n:230000
ATRIP   230000 perm   73 sec   (3164 perm/sec)   p_kst 4.963478e-01   p_cons 6.778261e-03   p_joint 1.916957e-02

Outputting figure to mutsig2_images.part000000000014/ATRIP.4_2428_230000_0.49635_0.0067783_0.01917.png
                gene_name: ATRIP
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.0068 
      ci_cons_bounds_left: 0.0064 
     ci_cons_bounds_right: 0.0071 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 32 percent done.
ATXN2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
ATXN2L   10000 perm   3 sec   (3835 perm/sec)   p_kst 5.140000e-02   p_cons 7.360000e-02   p_joint 3.080000e-02

Joint ci ratio: 1.052561e-01	ci left: 6.142673e-02	ci right 6.830044e-02	k: 1296	n:20000
Cons ci ratio: 9.509900e-02	ci left: 7.456446e-02	ci right 8.205869e-02	k: 1565	n:20000
KS ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
ATXN2L   20000 perm   6 sec   (3533 perm/sec)   p_kst 5.320000e-02   p_cons 7.825000e-02   p_joint 6.480000e-02

Joint ci ratio: 1.023295e-01	ci left: 4.424217e-02	ci right 4.904611e-02	k: 1398	n:30000
Cons ci ratio: 7.667880e-02	ci left: 7.705243e-02	ci right 8.322917e-02	k: 2403	n:30000
KS ci ratio: 9.438741e-02	ci left: 5.179491e-02	ci right 5.695849e-02	k: 1630	n:30000
ATXN2L   30000 perm   8 sec   (3577 perm/sec)   p_kst 5.433333e-02   p_cons 8.010000e-02   p_joint 4.660000e-02

Joint ci ratio: 8.620758e-02	ci left: 4.702727e-02	ci right 5.128849e-02	k: 1965	n:40000
Cons ci ratio: 6.640977e-02	ci left: 7.745791e-02	ci right 8.280323e-02	k: 3204	n:40000
KS ci ratio: 8.189496e-02	ci left: 5.195210e-02	ci right 5.641290e-02	k: 2166	n:40000
ATXN2L   40000 perm   11 sec   (3561 perm/sec)   p_kst 5.415000e-02   p_cons 8.010000e-02   p_joint 4.912500e-02

Outputting figure to mutsig2_images.part000000000014/ATXN2L.4_3552_40000_0.05415_0.0801_0.049125.png
                gene_name: ATXN2L
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 34 percent done.
AVIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
AVIL   10000 perm   2 sec   (5021 perm/sec)   p_kst 3.981000e-01   p_cons 4.370000e-02   p_joint 2.215000e-01

Joint ci ratio: 6.378337e-02	ci left: 1.537595e-01	ci right 1.639399e-01	k: 3176	n:20000
Cons ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
KS ci ratio: 3.357652e-02	ci left: 3.984352e-01	ci right 4.120923e-01	k: 8105	n:20000
AVIL   20000 perm   4 sec   (4505 perm/sec)   p_kst 4.052500e-01   p_cons 4.025000e-02   p_joint 1.588000e-01

Joint ci ratio: 5.382542e-02	ci left: 1.461746e-01	ci right 1.542933e-01	k: 4506	n:30000
Cons ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
KS ci ratio: 2.754053e-02	ci left: 3.975090e-01	ci right 4.086431e-01	k: 12092	n:30000
AVIL   30000 perm   7 sec   (4279 perm/sec)   p_kst 4.030667e-01   p_cons 4.056667e-02   p_joint 1.502000e-01

Joint ci ratio: 5.067577e-02	ci left: 1.268176e-01	ci right 1.334362e-01	k: 5204	n:40000
Cons ci ratio: 9.437205e-02	ci left: 3.939530e-02	ci right 4.332164e-02	k: 1653	n:40000
KS ci ratio: 2.389170e-02	ci left: 3.974394e-01	ci right 4.070748e-01	k: 16090	n:40000
AVIL   40000 perm   10 sec   (4133 perm/sec)   p_kst 4.022500e-01   p_cons 4.132500e-02   p_joint 1.301000e-01

Outputting figure to mutsig2_images.part000000000014/AVIL.4_2536_40000_0.40225_0.041325_0.1301.png
                gene_name: AVIL
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 36 percent done.
AVL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
Cons ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
KS ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
AVL9   10000 perm   2 sec   (5309 perm/sec)   p_kst 2.770000e-01   p_cons 2.740000e-02   p_joint 7.580000e-02

Joint ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
Cons ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
KS ci ratio: 4.338678e-02	ci left: 2.835185e-01	ci right 2.961427e-01	k: 5796	n:20000
AVL9   20000 perm   4 sec   (4713 perm/sec)   p_kst 2.898000e-01   p_cons 2.555000e-02   p_joint 1.008500e-01

Joint ci ratio: 6.770759e-02	ci left: 9.708702e-02	ci right 1.039239e-01	k: 3014	n:30000
Cons ci ratio: 1.390698e-01	ci left: 2.400317e-02	ci right 2.762279e-02	k: 773	n:30000
KS ci ratio: 3.542665e-02	ci left: 2.846702e-01	ci right 2.949705e-01	k: 8694	n:30000
AVL9   30000 perm   7 sec   (4500 perm/sec)   p_kst 2.898000e-01   p_cons 2.576667e-02   p_joint 1.004667e-01

Joint ci ratio: 7.007741e-02	ci left: 7.000196e-02	ci right 7.511030e-02	k: 2901	n:40000
Cons ci ratio: 1.205584e-01	ci left: 2.419556e-02	ci right 2.732381e-02	k: 1029	n:40000
KS ci ratio: 3.072767e-02	ci left: 2.847349e-01	ci right 2.936457e-01	k: 11567	n:40000
AVL9   40000 perm   9 sec   (4344 perm/sec)   p_kst 2.891750e-01   p_cons 2.572500e-02   p_joint 7.252500e-02

Joint ci ratio: 5.747299e-02	ci left: 8.266837e-02	ci right 8.757992e-02	k: 4255	n:50000
Cons ci ratio: 1.075526e-01	ci left: 2.448638e-02	ci right 2.728903e-02	k: 1293	n:50000
KS ci ratio: 2.751714e-02	ci left: 2.847104e-01	ci right 2.926741e-01	k: 14434	n:50000
AVL9   50000 perm   12 sec   (4237 perm/sec)   p_kst 2.886800e-01   p_cons 2.586000e-02   p_joint 8.510000e-02

Joint ci ratio: 6.271483e-02	ci left: 5.921288e-02	ci right 6.306304e-02	k: 3667	n:60000
Cons ci ratio: 9.873148e-02	ci left: 2.433464e-02	ci right 2.687820e-02	k: 1535	n:60000
KS ci ratio: 2.514715e-02	ci left: 2.846111e-01	ci right 2.918761e-01	k: 17294	n:60000
AVL9   60000 perm   14 sec   (4147 perm/sec)   p_kst 2.882333e-01   p_cons 2.558333e-02   p_joint 6.111667e-02

Outputting figure to mutsig2_images.part000000000014/AVL9.4_2011_60000_0.28823_0.025583_0.061117.png
                gene_name: AVL9
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 38 percent done.
AVPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
AVPR2   10000 perm   2 sec   (6125 perm/sec)   p_kst 2.230000e-02   p_cons 1.883000e-01   p_joint 7.340000e-02

Joint ci ratio: 1.498089e-01	ci left: 3.061553e-02	ci right 3.562141e-02	k: 661	n:20000
Cons ci ratio: 5.669738e-02	ci left: 1.874020e-01	ci right 1.983874e-01	k: 3857	n:20000
KS ci ratio: 1.798538e-01	ci left: 2.111042e-02	ci right 2.532976e-02	k: 463	n:20000
AVPR2   20000 perm   4 sec   (5391 perm/sec)   p_kst 2.315000e-02   p_cons 1.928500e-01   p_joint 3.305000e-02

Joint ci ratio: 1.220021e-01	ci left: 3.123366e-02	ci right 3.532405e-02	k: 997	n:30000
Cons ci ratio: 4.777179e-02	ci left: 1.789029e-01	ci right 1.876919e-01	k: 5498	n:30000
KS ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
AVPR2   30000 perm   6 sec   (5095 perm/sec)   p_kst 2.190000e-02   p_cons 1.832667e-01   p_joint 3.323333e-02

Joint ci ratio: 7.628465e-02	ci left: 5.955787e-02	ci right 6.430598e-02	k: 2476	n:40000
Cons ci ratio: 3.964001e-02	ci left: 1.925412e-01	ci right 2.003529e-01	k: 7857	n:40000
KS ci ratio: 1.309847e-01	ci left: 2.046382e-02	ci right 2.335617e-02	k: 875	n:40000
AVPR2   40000 perm   8 sec   (4916 perm/sec)   p_kst 2.187500e-02   p_cons 1.964250e-01   p_joint 6.190000e-02

Joint ci ratio: 8.658348e-02	ci left: 3.767239e-02	ci right 4.110135e-02	k: 1968	n:50000
Cons ci ratio: 3.559614e-02	ci left: 1.917138e-01	ci right 1.986817e-01	k: 9759	n:50000
KS ci ratio: 1.169383e-01	ci left: 2.069324e-02	ci right 2.328267e-02	k: 1098	n:50000
AVPR2   50000 perm   10 sec   (4773 perm/sec)   p_kst 2.196000e-02   p_cons 1.951800e-01   p_joint 3.936000e-02

Joint ci ratio: 8.804133e-02	ci left: 3.057345e-02	ci right 3.340539e-02	k: 1918	n:60000
Cons ci ratio: 3.245168e-02	ci left: 1.924325e-01	ci right 1.987969e-01	k: 11736	n:60000
KS ci ratio: 1.058828e-01	ci left: 2.114957e-02	ci right 2.353028e-02	k: 1339	n:60000
AVPR2   60000 perm   13 sec   (4662 perm/sec)   p_kst 2.231667e-02   p_cons 1.956000e-01   p_joint 3.196667e-02

Joint ci ratio: 7.630878e-02	ci left: 3.494057e-02	ci right 3.772660e-02	k: 2542	n:70000
Cons ci ratio: 3.004739e-02	ci left: 1.926387e-01	ci right 1.985295e-01	k: 13690	n:70000
KS ci ratio: 9.746676e-02	ci left: 2.148378e-02	ci right 2.369889e-02	k: 1580	n:70000
AVPR2   70000 perm   15 sec   (4540 perm/sec)   p_kst 2.257143e-02   p_cons 1.955714e-01   p_joint 3.631429e-02

Outputting figure to mutsig2_images.part000000000014/AVPR2.4_1148_70000_0.022571_0.19557_0.036314.png
                gene_name: AVPR2
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 39 percent done.
AWAT1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.003453e-02	ci left: 7.848229e-01	ci right 8.008061e-01	k: 7929	n:10000
KS ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
AWAT1   10000 perm   2 sec   (6350 perm/sec)   p_kst 8.369000e-01   p_cons 7.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AWAT1.3_1015_10000_0.8369_0.7929_1.png
                gene_name: AWAT1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
AXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
Cons ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
AXL   10000 perm   2 sec   (4710 perm/sec)   p_kst 8.300000e-03   p_cons 2.406000e-01   p_joint 4.940000e-02

Joint ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
Cons ci ratio: 4.921048e-02	ci left: 2.348873e-01	ci right 2.467881e-01	k: 4816	n:20000
KS ci ratio: 3.177907e-01	ci left: 6.351314e-03	ci right 8.795126e-03	k: 150	n:20000
AXL   20000 perm   5 sec   (4337 perm/sec)   p_kst 7.500000e-03   p_cons 2.408000e-01   p_joint 1.570000e-02

Joint ci ratio: 2.547049e-01	ci left: 6.835746e-03	ci right 8.861311e-03	k: 234	n:30000
Cons ci ratio: 4.009078e-02	ci left: 2.367978e-01	ci right 2.465189e-01	k: 7249	n:30000
KS ci ratio: 2.627104e-01	ci left: 6.399145e-03	ci right 8.364734e-03	k: 220	n:30000
AXL   30000 perm   7 sec   (4180 perm/sec)   p_kst 7.333333e-03   p_cons 2.416333e-01   p_joint 7.800000e-03

Joint ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
Cons ci ratio: 3.453753e-02	ci left: 2.393748e-01	ci right 2.478125e-01	k: 9743	n:40000
KS ci ratio: 2.221353e-01	ci left: 6.866777e-03	ci right 8.605832e-03	k: 308	n:40000
AXL   40000 perm   10 sec   (4063 perm/sec)   p_kst 7.700000e-03   p_cons 2.435750e-01   p_joint 9.600000e-03

Joint ci ratio: 1.815286e-01	ci left: 8.400834e-03	ci right 1.009688e-02	k: 461	n:50000
Cons ci ratio: 3.089636e-02	ci left: 2.397629e-01	ci right 2.473069e-01	k: 12176	n:50000
KS ci ratio: 2.030337e-01	ci left: 6.648502e-03	ci right 8.169529e-03	k: 369	n:50000
AXL   50000 perm   13 sec   (3976 perm/sec)   p_kst 7.380000e-03   p_cons 2.435200e-01   p_joint 9.220000e-03

Joint ci ratio: 1.196779e-01	ci left: 1.651438e-02	ci right 1.863265e-02	k: 1053	n:60000
Cons ci ratio: 2.819217e-02	ci left: 2.402524e-01	ci right 2.471391e-01	k: 14621	n:60000
KS ci ratio: 1.847162e-01	ci left: 6.761613e-03	ci right 8.153333e-03	k: 446	n:60000
AXL   60000 perm   16 sec   (3835 perm/sec)   p_kst 7.433333e-03   p_cons 2.436833e-01   p_joint 1.755000e-02

Joint ci ratio: 9.684190e-02	ci left: 2.176271e-02	ci right 2.399137e-02	k: 1600	n:70000
Cons ci ratio: 2.608673e-02	ci left: 2.407081e-01	ci right 2.470846e-01	k: 17072	n:70000
KS ci ratio: 1.675684e-01	ci left: 7.106860e-03	ci right 8.420151e-03	k: 542	n:70000
AXL   70000 perm   19 sec   (3766 perm/sec)   p_kst 7.742857e-03   p_cons 2.438857e-01   p_joint 2.285714e-02

Joint ci ratio: 9.876079e-02	ci left: 1.835787e-02	ci right 2.027722e-02	k: 1544	n:80000
Cons ci ratio: 2.508757e-02	ci left: 2.308830e-01	ci right 2.367613e-01	k: 18705	n:80000
KS ci ratio: 1.563114e-01	ci left: 7.190031e-03	ci right 8.421066e-03	k: 623	n:80000
AXL   80000 perm   22 sec   (3708 perm/sec)   p_kst 7.787500e-03   p_cons 2.338125e-01   p_joint 1.930000e-02

Joint ci ratio: 9.570317e-02	ci left: 1.742347e-02	ci right 1.918555e-02	k: 1646	n:90000
Cons ci ratio: 2.364931e-02	ci left: 2.311043e-01	ci right 2.366462e-01	k: 21048	n:90000
KS ci ratio: 1.471608e-01	ci left: 7.246315e-03	ci right 8.407967e-03	k: 703	n:90000
AXL   90000 perm   25 sec   (3649 perm/sec)   p_kst 7.811111e-03   p_cons 2.338667e-01   p_joint 1.828889e-02

Joint ci ratio: 1.024819e-01	ci left: 1.368048e-02	ci right 1.516788e-02	k: 1441	n:100000
Cons ci ratio: 2.246817e-02	ci left: 2.307313e-01	ci right 2.359842e-01	k: 23335	n:100000
KS ci ratio: 1.394494e-01	ci left: 7.293025e-03	ci right 8.395809e-03	k: 783	n:100000
AXL   100000 perm   28 sec   (3595 perm/sec)   p_kst 7.830000e-03   p_cons 2.333500e-01   p_joint 1.441000e-02

Joint ci ratio: 8.680878e-02	ci left: 1.740933e-02	ci right 1.899804e-02	k: 2001	n:110000
Cons ci ratio: 2.138866e-02	ci left: 2.314191e-01	ci right 2.364313e-01	k: 25731	n:110000
KS ci ratio: 1.309396e-01	ci left: 7.552371e-03	ci right 8.619264e-03	k: 888	n:110000
AXL   110000 perm   31 sec   (3538 perm/sec)   p_kst 8.072727e-03   p_cons 2.339182e-01   p_joint 1.819091e-02

Joint ci ratio: 8.583526e-02	ci left: 1.634953e-02	ci right 1.782394e-02	k: 2049	n:120000
Cons ci ratio: 2.049108e-02	ci left: 2.312996e-01	ci right 2.360966e-01	k: 28043	n:120000
KS ci ratio: 1.250289e-01	ci left: 7.616751e-03	ci right 8.640567e-03	k: 974	n:120000
AXL   120000 perm   34 sec   (3489 perm/sec)   p_kst 8.116667e-03   p_cons 2.336917e-01   p_joint 1.707500e-02

Joint ci ratio: 9.111356e-02	ci left: 1.339842e-02	ci right 1.468493e-02	k: 1824	n:130000
Cons ci ratio: 1.967452e-02	ci left: 2.316240e-01	ci right 2.362340e-01	k: 30410	n:130000
KS ci ratio: 1.201383e-01	ci left: 7.634825e-03	ci right 8.618074e-03	k: 1055	n:130000
AXL   130000 perm   38 sec   (3438 perm/sec)   p_kst 8.115385e-03   p_cons 2.339231e-01   p_joint 1.403077e-02

Joint ci ratio: 8.479471e-02	ci left: 1.439774e-02	ci right 1.567960e-02	k: 2104	n:140000
Cons ci ratio: 1.898431e-02	ci left: 2.312289e-01	ci right 2.356678e-01	k: 32682	n:140000
KS ci ratio: 1.161410e-01	ci left: 7.602426e-03	ci right 8.546690e-03	k: 1129	n:140000
AXL   140000 perm   41 sec   (3391 perm/sec)   p_kst 8.064286e-03   p_cons 2.334429e-01   p_joint 1.502857e-02

Joint ci ratio: 8.481743e-02	ci left: 1.344414e-02	ci right 1.464142e-02	k: 2105	n:150000
Cons ci ratio: 1.835033e-02	ci left: 2.311150e-01	ci right 2.354020e-01	k: 34988	n:150000
KS ci ratio: 1.120963e-01	ci left: 7.633145e-03	ci right 8.546023e-03	k: 1212	n:150000
AXL   150000 perm   45 sec   (3345 perm/sec)   p_kst 8.080000e-03   p_cons 2.332533e-01   p_joint 1.403333e-02

Joint ci ratio: 6.923163e-02	ci left: 1.896322e-02	ci right 2.032926e-02	k: 3142	n:160000
Cons ci ratio: 1.774828e-02	ci left: 2.315721e-01	ci right 2.357251e-01	k: 37383	n:160000
KS ci ratio: 1.088283e-01	ci left: 7.605789e-03	ci right 8.487177e-03	k: 1286	n:160000
AXL   160000 perm   48 sec   (3299 perm/sec)   p_kst 8.037500e-03   p_cons 2.336438e-01   p_joint 1.963750e-02

Joint ci ratio: 6.707689e-02	ci left: 1.903309e-02	ci right 2.035983e-02	k: 3347	n:170000
Cons ci ratio: 1.719816e-02	ci left: 2.320536e-01	ci right 2.360849e-01	k: 39791	n:170000
KS ci ratio: 1.051318e-01	ci left: 7.685104e-03	ci right 8.543563e-03	k: 1378	n:170000
AXL   170000 perm   52 sec   (3254 perm/sec)   p_kst 8.105882e-03   p_cons 2.340647e-01   p_joint 1.968824e-02

Joint ci ratio: 6.382249e-02	ci left: 1.987220e-02	ci right 2.118775e-02	k: 3694	n:180000
Cons ci ratio: 1.670267e-02	ci left: 2.323448e-01	ci right 2.362638e-01	k: 42174	n:180000
KS ci ratio: 1.021034e-01	ci left: 7.707320e-03	ci right 8.541972e-03	k: 1461	n:180000
AXL   180000 perm   56 sec   (3207 perm/sec)   p_kst 8.116667e-03   p_cons 2.343000e-01   p_joint 2.052222e-02

Joint ci ratio: 6.363848e-02	ci left: 1.895550e-02	ci right 2.020659e-02	k: 3719	n:190000
Cons ci ratio: 1.627032e-02	ci left: 2.321083e-01	ci right 2.359209e-01	k: 44462	n:190000
KS ci ratio: 9.974648e-02	ci left: 7.660784e-03	ci right 8.470123e-03	k: 1531	n:190000
AXL   190000 perm   60 sec   (3162 perm/sec)   p_kst 8.057895e-03   p_cons 2.340105e-01   p_joint 1.957368e-02

Outputting figure to mutsig2_images.part000000000014/AXL.4_2765_190000_0.0080579_0.23401_0.019574.png
                gene_name: AXL
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 43 percent done.
B4GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
Cons ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
KS ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
B4GALNT1   10000 perm   2 sec   (5185 perm/sec)   p_kst 4.760000e-01   p_cons 4.478000e-01   p_joint 5.497000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT1.4_1642_10000_0.476_0.4478_0.5497.png
                gene_name: B4GALNT1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 45 percent done.
B4GALNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
Cons ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
KS ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
B4GALNT4   10000 perm   2 sec   (4756 perm/sec)   p_kst 7.315000e-01   p_cons 5.230000e-02   p_joint 2.464000e-01

Joint ci ratio: 5.469398e-02	ci left: 1.987305e-01	ci right 2.099556e-01	k: 4086	n:20000
Cons ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
KS ci ratio: 1.692772e-02	ci left: 7.221275e-01	ci right 7.345061e-01	k: 14567	n:20000
B4GALNT4   20000 perm   5 sec   (4300 perm/sec)   p_kst 7.283500e-01   p_cons 5.205000e-02   p_joint 2.043000e-01

Joint ci ratio: 4.341673e-02	ci left: 2.090065e-01	ci right 2.183157e-01	k: 6409	n:30000
Cons ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
KS ci ratio: 1.380113e-02	ci left: 7.238646e-01	ci right 7.339577e-01	k: 21868	n:30000
B4GALNT4   30000 perm   7 sec   (4115 perm/sec)   p_kst 7.289333e-01   p_cons 5.646667e-02   p_joint 2.136333e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT4.4_3200_30000_0.72893_0.056467_0.21363.png
                gene_name: B4GALNT4
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
ATP8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
Cons ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
KS ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
ATP8A1   10000 perm   2 sec   (5082 perm/sec)   p_kst 4.933000e-01   p_cons 2.950000e-01   p_joint 6.408000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8A1.3_3721_10000_0.4933_0.295_0.6408.png
                gene_name: ATP8A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 48 percent done.
ATP9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
ATP9B   10000 perm   2 sec   (4099 perm/sec)   p_kst 3.634000e-01   p_cons 5.830000e-02   p_joint 4.435000e-01

Joint ci ratio: 5.149466e-02	ci left: 2.188317e-01	ci right 2.304484e-01	k: 4492	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 3.679837e-02	ci left: 3.552853e-01	ci right 3.686548e-01	k: 7239	n:20000
ATP9B   20000 perm   5 sec   (3844 perm/sec)   p_kst 3.619500e-01   p_cons 5.995000e-02   p_joint 2.246000e-01

Joint ci ratio: 2.862062e-02	ci left: 3.791893e-01	ci right 3.902331e-01	k: 11541	n:30000
Cons ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
KS ci ratio: 3.031424e-02	ci left: 3.524395e-01	ci right 3.633214e-01	k: 10736	n:30000
ATP9B   30000 perm   8 sec   (3805 perm/sec)   p_kst 3.578667e-01   p_cons 6.033333e-02   p_joint 3.847000e-01

Outputting figure to mutsig2_images.part000000000014/ATP9B.3_3564_30000_0.35787_0.060333_0.3847.png
                gene_name: ATP9B
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 50 percent done.
ATPBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
KS ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
ATPBD4   10000 perm   2 sec   (5231 perm/sec)   p_kst 2.400000e-02   p_cons 5.536000e-01   p_joint 1.945000e-01

Joint ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
Cons ci ratio: 2.413014e-02	ci left: 5.619519e-01	ci right 5.757281e-01	k: 11377	n:20000
KS ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
ATPBD4   20000 perm   4 sec   (4554 perm/sec)   p_kst 2.365000e-02   p_cons 5.688500e-01   p_joint 1.016500e-01

Joint ci ratio: 6.932961e-02	ci left: 9.295152e-02	ci right 9.966023e-02	k: 2888	n:30000
Cons ci ratio: 1.979041e-02	ci left: 5.610364e-01	ci right 5.722841e-01	k: 17000	n:30000
KS ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
ATPBD4   30000 perm   7 sec   (4331 perm/sec)   p_kst 2.443333e-02   p_cons 5.666667e-01   p_joint 9.626667e-02

Joint ci ratio: 6.838961e-02	ci left: 7.329838e-02	ci right 7.851338e-02	k: 3035	n:40000
Cons ci ratio: 1.715809e-02	ci left: 5.612510e-01	ci right 5.709894e-01	k: 22645	n:40000
KS ci ratio: 1.245242e-01	ci left: 2.266770e-02	ci right 2.570191e-02	k: 966	n:40000
ATPBD4   40000 perm   10 sec   (4196 perm/sec)   p_kst 2.415000e-02   p_cons 5.661250e-01   p_joint 7.587500e-02

Joint ci ratio: 7.439967e-02	ci left: 5.063968e-02	ci right 5.457247e-02	k: 2629	n:50000
Cons ci ratio: 1.538005e-02	ci left: 5.607010e-01	ci right 5.694115e-01	k: 28253	n:50000
KS ci ratio: 1.129070e-01	ci left: 2.220936e-02	ci right 2.488635e-02	k: 1176	n:50000
ATPBD4   50000 perm   12 sec   (4076 perm/sec)   p_kst 2.352000e-02   p_cons 5.650600e-01   p_joint 5.258000e-02

Joint ci ratio: 5.440520e-02	ci left: 7.746270e-02	ci right 8.181140e-02	k: 4777	n:60000
Cons ci ratio: 1.404939e-02	ci left: 5.607549e-01	ci right 5.687055e-01	k: 33884	n:60000
KS ci ratio: 9.597733e-02	ci left: 2.575022e-02	ci right 2.836246e-02	k: 1622	n:60000
ATPBD4   60000 perm   15 sec   (4051 perm/sec)   p_kst 2.703333e-02   p_cons 5.647333e-01   p_joint 7.961667e-02

Outputting figure to mutsig2_images.part000000000014/ATPBD4.3_1030_60000_0.027033_0.56473_0.079617.png
                gene_name: ATPBD4
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 52 percent done.
ATXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
Cons ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
ATXN2   10000 perm   2 sec   (4731 perm/sec)   p_kst 4.155000e-01   p_cons 6.349000e-01   p_joint 7.800000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN2.3_4042_10000_0.4155_0.6349_0.78.png
                gene_name: ATXN2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 54 percent done.
AURKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
AURKA   10000 perm   2 sec   (5284 perm/sec)   p_kst 3.901000e-01   p_cons 8.570000e-02   p_joint 3.751000e-01

Joint ci ratio: 3.781984e-02	ci left: 3.427896e-01	ci right 3.560542e-01	k: 6988	n:20000
Cons ci ratio: 9.030463e-02	ci left: 8.219878e-02	ci right 9.002205e-02	k: 1721	n:20000
KS ci ratio: 3.484907e-02	ci left: 3.806901e-01	ci right 3.942426e-01	k: 7749	n:20000
AURKA   20000 perm   4 sec   (4895 perm/sec)   p_kst 3.874500e-01   p_cons 8.605000e-02   p_joint 3.494000e-01

Outputting figure to mutsig2_images.part000000000014/AURKA.3_1244_20000_0.38745_0.08605_0.3494.png
                gene_name: AURKA
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 55 percent done.
AVPR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
Cons ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
KS ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
AVPR1B   10000 perm   2 sec   (5491 perm/sec)   p_kst 3.176000e-01   p_cons 2.343000e-01   p_joint 4.391000e-01

Outputting figure to mutsig2_images.part000000000014/AVPR1B.3_1283_10000_0.3176_0.2343_0.4391.png
                gene_name: AVPR1B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
AXIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
AXIN1   10000 perm   2 sec   (4970 perm/sec)   p_kst 3.094000e-01   p_cons 5.621000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000014/AXIN1.3_2629_10000_0.3094_0.5621_0.4849.png
                gene_name: AXIN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 59 percent done.
AZI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
AZI1   10000 perm   2 sec   (5124 perm/sec)   p_kst 7.313000e-01   p_cons 7.240000e-02   p_joint 4.340000e-01

Joint ci ratio: 5.546248e-02	ci left: 1.942774e-01	ci right 2.054100e-01	k: 3996	n:20000
Cons ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
KS ci ratio: 1.689778e-02	ci left: 7.228323e-01	ci right 7.352010e-01	k: 14581	n:20000
AZI1   20000 perm   4 sec   (4594 perm/sec)   p_kst 7.290500e-01   p_cons 7.270000e-02   p_joint 1.998000e-01

Outputting figure to mutsig2_images.part000000000014/AZI1.3_3343_20000_0.72905_0.0727_0.1998.png
                gene_name: AZI1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
B3GALTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
Cons ci ratio: 6.739209e-02	ci left: 2.442058e-01	ci right 2.613385e-01	k: 2527	n:10000
KS ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
B3GALTL   10000 perm   2 sec   (5261 perm/sec)   p_kst 3.063000e-01   p_cons 2.527000e-01   p_joint 3.089000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALTL.3_1557_10000_0.3063_0.2527_0.3089.png
                gene_name: B3GALTL
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 62 percent done.
B3GAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
Cons ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
KS ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
B3GAT2   10000 perm   2 sec   (6095 perm/sec)   p_kst 1.207000e-01   p_cons 6.880000e-02   p_joint 1.414000e-01

Joint ci ratio: 5.721237e-02	ci left: 1.846329e-01	ci right 1.955574e-01	k: 3801	n:20000
Cons ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
KS ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
B3GAT2   20000 perm   4 sec   (5270 perm/sec)   p_kst 1.212500e-01   p_cons 6.445000e-02   p_joint 1.900500e-01

Joint ci ratio: 4.837602e-02	ci left: 1.752048e-01	ci right 1.839240e-01	k: 5386	n:30000
Cons ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
KS ci ratio: 6.145235e-02	ci left: 1.157510e-01	ci right 1.231228e-01	k: 3582	n:30000
B3GAT2   30000 perm   6 sec   (4968 perm/sec)   p_kst 1.194000e-01   p_cons 6.510000e-02   p_joint 1.795333e-01

Outputting figure to mutsig2_images.part000000000014/B3GAT2.3_988_30000_0.1194_0.0651_0.17953.png
                gene_name: B3GAT2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
B3GNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
KS ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
B3GNT1   10000 perm   2 sec   (5193 perm/sec)   p_kst 8.010000e-02   p_cons 7.140000e-02   p_joint 7.860000e-02

Joint ci ratio: 1.621233e-01	ci left: 2.609357e-02	ci right 3.074488e-02	k: 567	n:20000
Cons ci ratio: 1.002250e-01	ci left: 6.747821e-02	ci right 7.464710e-02	k: 1420	n:20000
KS ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
B3GNT1   20000 perm   4 sec   (4740 perm/sec)   p_kst 7.280000e-02   p_cons 7.100000e-02   p_joint 2.835000e-02

Joint ci ratio: 7.449384e-02	ci left: 8.134356e-02	ci right 8.767051e-02	k: 2534	n:30000
Cons ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
KS ci ratio: 8.035231e-02	ci left: 7.053909e-02	ci right 7.647716e-02	k: 2204	n:30000
B3GNT1   30000 perm   6 sec   (4631 perm/sec)   p_kst 7.346667e-02   p_cons 6.510000e-02   p_joint 8.446667e-02

Outputting figure to mutsig2_images.part000000000014/B3GNT1.3_1256_30000_0.073467_0.0651_0.084467.png
                gene_name: B3GNT1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.088 

Current progress: 66 percent done.
B3GNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
B3GNT6   10000 perm   2 sec   (5900 perm/sec)   p_kst 3.085000e-01   p_cons 9.306000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000014/B3GNT6.3_1162_10000_0.3085_0.9306_0.4683.png
                gene_name: B3GNT6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 68 percent done.
B4GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
Cons ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
KS ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
B4GALNT2   10000 perm   2 sec   (4513 perm/sec)   p_kst 9.049000e-01   p_cons 4.217000e-01   p_joint 9.000000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT2.3_1763_10000_0.9049_0.4217_0.9.png
                gene_name: B4GALNT2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 70 percent done.
B4GALNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
Cons ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
KS ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
B4GALNT3   10000 perm   2 sec   (4293 perm/sec)   p_kst 6.812000e-01   p_cons 1.492000e-01   p_joint 5.934000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT3.3_3077_10000_0.6812_0.1492_0.5934.png
                gene_name: B4GALNT3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 71 percent done.
B4GALT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
Cons ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
B4GALT5   10000 perm   2 sec   (5894 perm/sec)   p_kst 8.523000e-01   p_cons 5.059000e-01   p_joint 9.151000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT5.3_1203_10000_0.8523_0.5059_0.9151.png
                gene_name: B4GALT5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 73 percent done.
B4GALT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
KS ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
B4GALT6   10000 perm   2 sec   (5326 perm/sec)   p_kst 2.390000e-02   p_cons 1.350000e-02   p_joint 1.630000e-02

Joint ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
Cons ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
KS ci ratio: 1.754520e-01	ci left: 2.221037e-02	ci right 2.652943e-02	k: 486	n:20000
B4GALT6   20000 perm   4 sec   (4600 perm/sec)   p_kst 2.430000e-02   p_cons 1.265000e-02   p_joint 5.600000e-03

Joint ci ratio: 1.263217e-01	ci left: 2.913224e-02	ci right 3.309259e-02	k: 932	n:30000
Cons ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
KS ci ratio: 1.461008e-01	ci left: 2.171899e-02	ci right 2.517415e-02	k: 702	n:30000
B4GALT6   30000 perm   7 sec   (4356 perm/sec)   p_kst 2.340000e-02   p_cons 1.236667e-02   p_joint 3.106667e-02

Joint ci ratio: 1.482657e-01	ci left: 1.590033e-02	ci right 1.847045e-02	k: 686	n:40000
Cons ci ratio: 1.754544e-01	ci left: 1.124287e-02	ci right 1.342878e-02	k: 492	n:40000
KS ci ratio: 1.268280e-01	ci left: 2.184384e-02	ci right 2.482592e-02	k: 932	n:40000
B4GALT6   40000 perm   9 sec   (4219 perm/sec)   p_kst 2.330000e-02   p_cons 1.230000e-02   p_joint 1.715000e-02

Joint ci ratio: 1.313543e-01	ci left: 1.634938e-02	ci right 1.866712e-02	k: 874	n:50000
Cons ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
KS ci ratio: 1.133516e-01	ci left: 2.203435e-02	ci right 2.470139e-02	k: 1167	n:50000
B4GALT6   50000 perm   12 sec   (4172 perm/sec)   p_kst 2.334000e-02   p_cons 1.220000e-02   p_joint 1.748000e-02

Joint ci ratio: 1.233628e-01	ci left: 1.552812e-02	ci right 1.758569e-02	k: 992	n:60000
Cons ci ratio: 1.443996e-01	ci left: 1.125657e-02	ci right 1.302442e-02	k: 727	n:60000
KS ci ratio: 1.023814e-01	ci left: 2.262760e-02	ci right 2.508542e-02	k: 1430	n:60000
B4GALT6   60000 perm   14 sec   (4138 perm/sec)   p_kst 2.383333e-02   p_cons 1.211667e-02   p_joint 1.653333e-02

Joint ci ratio: 1.149966e-01	ci left: 1.538878e-02	ci right 1.728019e-02	k: 1142	n:70000
Cons ci ratio: 1.333970e-01	ci left: 1.137227e-02	ci right 1.301140e-02	k: 852	n:70000
KS ci ratio: 9.518185e-02	ci left: 2.252997e-02	ci right 2.479546e-02	k: 1655	n:70000
B4GALT6   70000 perm   17 sec   (4108 perm/sec)   p_kst 2.364286e-02   p_cons 1.217143e-02   p_joint 1.631429e-02

Joint ci ratio: 1.108174e-01	ci left: 1.454592e-02	ci right 1.626449e-02	k: 1231	n:80000
Cons ci ratio: 1.248372e-01	ci left: 1.141443e-02	ci right 1.294625e-02	k: 973	n:80000
KS ci ratio: 8.833364e-02	ci left: 2.296271e-02	ci right 2.509700e-02	k: 1921	n:80000
B4GALT6   80000 perm   20 sec   (4070 perm/sec)   p_kst 2.401250e-02   p_cons 1.216250e-02   p_joint 1.538750e-02

Joint ci ratio: 9.996058e-02	ci left: 1.595955e-02	ci right 1.764958e-02	k: 1511	n:90000
Cons ci ratio: 1.176298e-01	ci left: 1.147142e-02	ci right 1.291583e-02	k: 1096	n:90000
KS ci ratio: 8.320791e-02	ci left: 2.306433e-02	ci right 2.507762e-02	k: 2165	n:90000
B4GALT6   90000 perm   22 sec   (4023 perm/sec)   p_kst 2.405556e-02   p_cons 1.217778e-02   p_joint 1.678889e-02

Joint ci ratio: 9.468777e-02	ci left: 1.605154e-02	ci right 1.765666e-02	k: 1684	n:100000
Cons ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
KS ci ratio: 7.886528e-02	ci left: 2.315831e-02	ci right 2.506943e-02	k: 2410	n:100000
B4GALT6   100000 perm   25 sec   (3967 perm/sec)   p_kst 2.410000e-02   p_cons 1.205000e-02   p_joint 1.684000e-02

Joint ci ratio: 8.881812e-02	ci left: 1.662660e-02	ci right 1.818081e-02	k: 1913	n:110000
Cons ci ratio: 1.072447e-01	ci left: 1.135604e-02	ci right 1.265170e-02	k: 1319	n:110000
KS ci ratio: 7.480728e-02	ci left: 2.344270e-02	ci right 2.527341e-02	k: 2678	n:110000
B4GALT6   110000 perm   28 sec   (3914 perm/sec)   p_kst 2.434545e-02   p_cons 1.199091e-02   p_joint 1.739091e-02

Joint ci ratio: 8.537039e-02	ci left: 1.652900e-02	ci right 1.801112e-02	k: 2071	n:120000
Cons ci ratio: 1.031513e-01	ci left: 1.127789e-02	ci right 1.251254e-02	k: 1426	n:120000
KS ci ratio: 7.184389e-02	ci left: 2.333789e-02	ci right 2.508520e-02	k: 2904	n:120000
B4GALT6   120000 perm   31 sec   (3861 perm/sec)   p_kst 2.420000e-02   p_cons 1.188333e-02   p_joint 1.725833e-02

Joint ci ratio: 8.319174e-02	ci left: 1.609324e-02	ci right 1.749766e-02	k: 2182	n:130000
Cons ci ratio: 9.939507e-02	ci left: 1.123507e-02	ci right 1.241763e-02	k: 1536	n:130000
KS ci ratio: 6.902633e-02	ci left: 2.337144e-02	ci right 2.504988e-02	k: 3146	n:130000
B4GALT6   130000 perm   35 sec   (3760 perm/sec)   p_kst 2.420000e-02   p_cons 1.181538e-02   p_joint 1.678462e-02

Outputting figure to mutsig2_images.part000000000014/B4GALT6.3_1185_130000_0.0242_0.011815_0.016785.png
                gene_name: B4GALT6
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 75 percent done.
ATP6V1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
KS ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
ATP6V1H   10000 perm   2 sec   (5570 perm/sec)   p_kst 1.222000e-01   p_cons 8.515000e-01   p_joint 1

Joint ci ratio: 2.936310e-03	ci left: 9.874029e-01	ci right 9.903524e-01	k: 19779	n:20000
Cons ci ratio: 1.194015e-02	ci left: 8.383897e-01	ci right 8.485102e-01	k: 16870	n:20000
KS ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
ATP6V1H   20000 perm   4 sec   (5122 perm/sec)   p_kst 1.220000e-01   p_cons 8.435000e-01   p_joint 9.889500e-01

Outputting figure to mutsig2_images.part000000000014/ATP6V1H.2_1504_20000_0.122_0.8435_0.98895.png
                gene_name: ATP6V1H
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 77 percent done.
ATP8B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
Cons ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
ATP8B3   10000 perm   2 sec   (4715 perm/sec)   p_kst 4.100000e-02   p_cons 6.390000e-01   p_joint 1.651000e-01

Joint ci ratio: 6.964153e-02	ci left: 1.319671e-01	ci right 1.415388e-01	k: 2734	n:20000
Cons ci ratio: 2.099597e-02	ci left: 6.286851e-01	ci right 6.420755e-01	k: 12708	n:20000
KS ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
ATP8B3   20000 perm   5 sec   (4283 perm/sec)   p_kst 4.075000e-02   p_cons 6.354000e-01   p_joint 1.367000e-01

Joint ci ratio: 4.479772e-02	ci left: 1.987581e-01	ci right 2.078994e-01	k: 6099	n:30000
Cons ci ratio: 1.703257e-02	ci left: 6.329333e-01	ci right 6.438399e-01	k: 19152	n:30000
KS ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
ATP8B3   30000 perm   7 sec   (4086 perm/sec)   p_kst 4.076667e-02   p_cons 6.384000e-01   p_joint 2.033000e-01

Joint ci ratio: 3.635242e-02	ci left: 2.211140e-01	ci right 2.293259e-01	k: 9008	n:40000
Cons ci ratio: 1.469250e-02	ci left: 6.354992e-01	ci right 6.449305e-01	k: 25609	n:40000
KS ci ratio: 9.482145e-02	ci left: 3.902881e-02	ci right 4.293818e-02	k: 1638	n:40000
ATP8B3   40000 perm   10 sec   (3961 perm/sec)   p_kst 4.095000e-02   p_cons 6.402250e-01   p_joint 2.252000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B3.2_4063_40000_0.04095_0.64023_0.2252.png
                gene_name: ATP8B3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 79 percent done.
ATPIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
ATPIF1   10000 perm   1 sec   (6898 perm/sec)   p_kst 1.130000e-02   p_cons 9.062000e-01   p_joint 6.260000e-02

Joint ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
Cons ci ratio: 8.921939e-03	ci left: 9.020242e-01	ci right 9.101573e-01	k: 18123	n:20000
KS ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
ATPIF1   20000 perm   3 sec   (5992 perm/sec)   p_kst 1.150000e-02   p_cons 9.061500e-01   p_joint 5.475000e-02

Joint ci ratio: 7.852232e-02	ci left: 7.368038e-02	ci right 7.973523e-02	k: 2300	n:30000
Cons ci ratio: 7.265053e-03	ci left: 9.032510e-01	ci right 9.098700e-01	k: 27198	n:30000
KS ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
ATPIF1   30000 perm   5 sec   (5605 perm/sec)   p_kst 1.156667e-02   p_cons 9.066000e-01   p_joint 7.666667e-02

Joint ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
Cons ci ratio: 6.315661e-03	ci left: 9.030474e-01	ci right 9.087935e-01	k: 36238	n:40000
KS ci ratio: 1.782199e-01	ci left: 1.088429e-02	ci right 1.303743e-02	k: 477	n:40000
ATPIF1   40000 perm   8 sec   (5332 perm/sec)   p_kst 1.192500e-02   p_cons 9.059500e-01   p_joint 2.457500e-02

Joint ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
Cons ci ratio: 5.619262e-03	ci left: 9.042587e-01	ci right 9.093740e-01	k: 45342	n:50000
KS ci ratio: 1.641266e-01	ci left: 1.035361e-02	ci right 1.222378e-02	k: 563	n:50000
ATPIF1   50000 perm   10 sec   (5143 perm/sec)   p_kst 1.126000e-02   p_cons 9.068400e-01   p_joint 2.046000e-02

Joint ci ratio: 1.111746e-01	ci left: 1.917029e-02	ci right 2.144311e-02	k: 1217	n:60000
Cons ci ratio: 5.128795e-03	ci left: 9.045132e-01	ci right 9.091807e-01	k: 54412	n:60000
KS ci ratio: 1.510503e-01	ci left: 1.026102e-02	ci right 1.195344e-02	k: 665	n:60000
ATPIF1   60000 perm   12 sec   (5008 perm/sec)   p_kst 1.108333e-02   p_cons 9.068667e-01   p_joint 2.028333e-02

Joint ci ratio: 9.797518e-02	ci left: 2.126068e-02	ci right 2.346487e-02	k: 1564	n:70000
Cons ci ratio: 4.737321e-03	ci left: 9.050842e-01	ci right 9.093962e-01	k: 63508	n:70000
KS ci ratio: 1.384116e-01	ci left: 1.054395e-02	ci right 1.212552e-02	k: 792	n:70000
ATPIF1   70000 perm   14 sec   (4896 perm/sec)   p_kst 1.131429e-02   p_cons 9.072571e-01   p_joint 2.234286e-02

Joint ci ratio: 6.195915e-02	ci left: 4.617170e-02	ci right 4.913621e-02	k: 3811	n:80000
Cons ci ratio: 4.433494e-03	ci left: 9.051431e-01	ci right 9.091773e-01	k: 72574	n:80000
KS ci ratio: 1.289185e-01	ci left: 1.068797e-02	ci right 1.217278e-02	k: 913	n:80000
ATPIF1   80000 perm   17 sec   (4785 perm/sec)   p_kst 1.141250e-02   p_cons 9.071750e-01   p_joint 4.763750e-02

Joint ci ratio: 5.747549e-02	ci left: 4.773020e-02	ci right 5.056562e-02	k: 4422	n:90000
Cons ci ratio: 4.172953e-03	ci left: 9.055436e-01	ci right 9.093412e-01	k: 81671	n:90000
KS ci ratio: 1.218607e-01	ci left: 1.067355e-02	ci right 1.206932e-02	k: 1022	n:90000
ATPIF1   90000 perm   19 sec   (4684 perm/sec)   p_kst 1.135556e-02   p_cons 9.074556e-01   p_joint 4.913333e-02

Joint ci ratio: 5.723234e-02	ci left: 4.352608e-02	ci right 4.610040e-02	k: 4480	n:100000
Cons ci ratio: 3.952325e-03	ci left: 9.059194e-01	ci right 9.095169e-01	k: 90773	n:100000
KS ci ratio: 1.152318e-01	ci left: 1.078037e-02	ci right 1.210820e-02	k: 1143	n:100000
ATPIF1   100000 perm   22 sec   (4588 perm/sec)   p_kst 1.143000e-02   p_cons 9.077300e-01   p_joint 4.480000e-02

Joint ci ratio: 8.380971e-02	ci left: 1.868210e-02	ci right 2.032519e-02	k: 2144	n:110000
Cons ci ratio: 3.762715e-03	ci left: 9.062583e-01	ci right 9.096837e-01	k: 99878	n:110000
KS ci ratio: 1.094041e-01	ci left: 1.090482e-02	ci right 1.217567e-02	k: 1268	n:110000
ATPIF1   110000 perm   24 sec   (4498 perm/sec)   p_kst 1.152727e-02   p_cons 9.079818e-01   p_joint 1.949091e-02

Joint ci ratio: 7.673657e-02	ci left: 2.046598e-02	ci right 2.210727e-02	k: 2553	n:120000
Cons ci ratio: 3.601406e-03	ci left: 9.063843e-01	ci right 9.096626e-01	k: 108964	n:120000
KS ci ratio: 1.041531e-01	ci left: 1.105865e-02	ci right 1.228178e-02	k: 1399	n:120000
ATPIF1   120000 perm   27 sec   (4407 perm/sec)   p_kst 1.165833e-02   p_cons 9.080333e-01   p_joint 2.127500e-02

Joint ci ratio: 7.715588e-02	ci left: 1.871750e-02	ci right 2.022712e-02	k: 2530	n:130000
Cons ci ratio: 3.456179e-03	ci left: 9.066407e-01	ci right 9.097872e-01	k: 118069	n:130000
KS ci ratio: 1.001897e-01	ci left: 1.105501e-02	ci right 1.222847e-02	k: 1512	n:130000
ATPIF1   130000 perm   30 sec   (4323 perm/sec)   p_kst 1.163077e-02   p_cons 9.082231e-01   p_joint 1.946154e-02

Joint ci ratio: 7.433110e-02	ci left: 1.875403e-02	ci right 2.020882e-02	k: 2726	n:140000
Cons ci ratio: 3.328343e-03	ci left: 9.068050e-01	ci right 9.098352e-01	k: 127166	n:140000
KS ci ratio: 9.658673e-02	ci left: 1.106659e-02	ci right 1.219663e-02	k: 1627	n:140000
ATPIF1   140000 perm   33 sec   (4236 perm/sec)   p_kst 1.162143e-02   p_cons 9.083286e-01   p_joint 1.947143e-02

Outputting figure to mutsig2_images.part000000000014/ATPIF1.2_378_140000_0.011621_0.90833_0.019471.png
                gene_name: ATPIF1
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 80 percent done.
ATXN7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
Cons ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
KS ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
ATXN7L2   10000 perm   2 sec   (4906 perm/sec)   p_kst 8.275000e-01   p_cons 4.617000e-01   p_joint 9.016000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN7L2.2_2213_10000_0.8275_0.4617_0.9016.png
                gene_name: ATXN7L2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 82 percent done.
ATXN7L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
KS ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
ATXN7L3   10000 perm   2 sec   (5570 perm/sec)   p_kst 5.846000e-01   p_cons 3.171000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATXN7L3.2_1113_10000_0.5846_0.3171_1.png
                gene_name: ATXN7L3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
AUP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
Cons ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
KS ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
AUP1   10000 perm   2 sec   (5407 perm/sec)   p_kst 2.618000e-01   p_cons 8.496000e-01   p_joint 7.620000e-01

Outputting figure to mutsig2_images.part000000000014/AUP1.2_1281_10000_0.2618_0.8496_0.762.png
                gene_name: AUP1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 86 percent done.
AURKC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
Cons ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
KS ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
AURKC   10000 perm   2 sec   (5670 perm/sec)   p_kst 1.134000e-01   p_cons 7.293000e-01   p_joint 2.366000e-01

Joint ci ratio: 6.525467e-02	ci left: 1.478393e-01	ci right 1.578618e-01	k: 3056	n:20000
Cons ci ratio: 1.679089e-02	ci left: 7.253500e-01	ci right 7.376827e-01	k: 14631	n:20000
KS ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
AURKC   20000 perm   4 sec   (4930 perm/sec)   p_kst 1.104000e-01   p_cons 7.315500e-01   p_joint 1.528000e-01

Outputting figure to mutsig2_images.part000000000014/AURKC.2_963_20000_0.1104_0.73155_0.1528.png
                gene_name: AURKC
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 88 percent done.
AXIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
Cons ci ratio: 1.891238e-02	ci left: 8.033895e-01	ci right 8.188289e-01	k: 8112	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
AXIN2   10000 perm   2 sec   (4764 perm/sec)   p_kst 4.341000e-01   p_cons 8.112000e-01   p_joint 7.758000e-01

Outputting figure to mutsig2_images.part000000000014/AXIN2.2_2572_10000_0.4341_0.8112_0.7758.png
                gene_name: AXIN2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 89 percent done.
AZI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
AZI2   10000 perm   2 sec   (5385 perm/sec)   p_kst 4.556000e-01   p_cons 2.420000e-01   p_joint 4.817000e-01

Outputting figure to mutsig2_images.part000000000014/AZI2.2_1296_10000_0.4556_0.242_0.4817.png
                gene_name: AZI2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 91 percent done.
AZU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
KS ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
AZU1   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.683000e-01   p_cons 4.220000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
Cons ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
KS ci ratio: 2.427063e-02	ci left: 5.590969e-01	ci right 5.728839e-01	k: 11320	n:20000
AZU1   20000 perm   4 sec   (4971 perm/sec)   p_kst 5.660000e-01   p_cons 4.060000e-02   p_joint 4.615000e-02

Joint ci ratio: 7.370270e-02	ci left: 8.298206e-02	ci right 8.936501e-02	k: 2584	n:30000
Cons ci ratio: 9.858054e-02	ci left: 4.759332e-02	ci right 5.256094e-02	k: 1501	n:30000
KS ci ratio: 1.983881e-02	ci left: 5.598347e-01	ci right 5.710860e-01	k: 16964	n:30000
AZU1   30000 perm   6 sec   (4728 perm/sec)   p_kst 5.654667e-01   p_cons 5.003333e-02   p_joint 8.613333e-02

Outputting figure to mutsig2_images.part000000000014/AZU1.2_776_30000_0.56547_0.050033_0.086133.png
                gene_name: AZU1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 93 percent done.
B3GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
B3GALNT2   10000 perm   2 sec   (5393 perm/sec)   p_kst 4.309000e-01   p_cons 1.899000e-01   p_joint 2.864000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALNT2.2_1551_10000_0.4309_0.1899_0.2864.png
                gene_name: B3GALNT2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 95 percent done.
B3GALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
Cons ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
KS ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
B3GALT1   10000 perm   2 sec   (6063 perm/sec)   p_kst 8.266000e-01   p_cons 3.979000e-01   p_joint 8.790000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT1.2_985_10000_0.8266_0.3979_0.879.png
                gene_name: B3GALT1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 96 percent done.
B3GALT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
Cons ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
KS ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
B3GALT2   10000 perm   2 sec   (5790 perm/sec)   p_kst 8.720000e-01   p_cons 3.145000e-01   p_joint 9.653000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT2.2_1273_10000_0.872_0.3145_0.9653.png
                gene_name: B3GALT2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 98 percent done.
B4GALT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
KS ci ratio: 3.754382e-02	ci left: 5.116542e-01	ci right 5.313333e-01	k: 5215	n:10000
B4GALT2   10000 perm   1 sec   (6681 perm/sec)   p_kst 5.215000e-01   p_cons 9.547000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT2.2_1143_10000_0.5215_0.9547_0.94.png
                gene_name: B4GALT2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000014
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 14 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 4421732: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000015> was used as the working directory.
Started at Wed Oct 24 17:31:03 2012
Results reported at Wed Oct 24 17:43:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000015.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000015.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 15  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000015.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    929.56 sec.
    Max Memory :      5397 MB
    Max Swap   :      7729 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
15
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 15
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 15: processing genes 1268 - 1357
Calculating significance of each gene.
Using projection method.
1268	BACE1	5.239558e-01
1269	BACE2	6.797502e-01
1270	BACH1	5.971699e-01
1271	BACH2	8.722123e-01
1272	BAD	1
1273	BAG1	1
1274	BAG2	1
1275	BAG3	5.345639e-01
1276	BAG4	8.714469e-01
1277	BAG5	5.756876e-01
1278	BAGE	1
1279	BAGE2	2.109146e-08
1280	BAGE3	1
1281	BAGE4	1
1282	BAGE5	1
1283	BAHCC1	9.872992e-01
1284	BAHD1	7.766542e-01
1285	BAI1	9.699654e-01
1286	BAI2	6.118921e-01
1287	BAI3	1.135050e-01
1288	BAIAP2	8.599161e-01
1289	BAIAP2L1	8.648467e-01
1290	BAIAP2L2	1
1291	BAIAP3	9.554025e-01
1292	BAK1	1
1293	BAMBI	4.113618e-01
1294	BANF1	1
1295	BANF2	1
1296	BANK1	9.543055e-01
1297	BANP	9.447645e-01
1298	BAP1	5.580681e-01
1299	BARD1	5.928412e-01
1300	BARHL1	7.824271e-01
1301	BARHL2	2.512312e-01
1302	BARX1	1
1303	BARX2	1
1304	BASP1	2.709370e-03
In gene BAT1 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 1327    n = 1	mu =   5.69e-07
1305	BAT1	2.680837e-01
In gene BAT2 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 6557    n = 1	mu =   3.68e-07
1306	BAT2	9.835751e-01
1307	BAT2L1	9.595586e-01
1308	BAT2L2	9.993894e-01
1309	BAT3	1
1310	BAT4	4.370415e-01
1311	BAT5	9.641033e-01
1312	BATF	1
1313	BATF2	6.032016e-01
1314	BATF3	5.335526e-01
1315	BAX	5.927105e-01
1316	BAZ1A	9.871591e-01
1317	BAZ1B	9.750802e-01
1318	BAZ2A	1
1319	BAZ2B	7.421226e-01
1320	BBOX1	3.099444e-01
1321	BBS1	9.199710e-01
1322	BBS10	9.691148e-01
1323	BBS12	8.660978e-01
1324	BBS2	1
1325	BBS4	8.448201e-01
1326	BBS5	1
1327	BBS7	4.077209e-01
1328	BBS9	9.120808e-01
1329	BBX	9.866454e-01
1330	BCAM	9.733064e-01
1331	BCAN	1
1332	BCAP29	4.881055e-01
1333	BCAP31	1
1334	BCAR1	1
1335	BCAR3	9.957967e-01
1336	BCAS1	2.650537e-02
1337	BCAS2	1.677716e-01
1338	BCAS3	8.620253e-02
1339	BCAS4	1
1340	BCAT1	7.352200e-01
1341	BCAT2	7.981999e-01
1342	BCCIP	1
1343	BCDIN3D	1
1344	BCHE	1.702441e-04
1345	BCKDHA	1
1346	BCKDHB	3.003743e-02
1347	BCKDK	7.751500e-01
1348	BCL10	5.168424e-01
1349	BCL11A	1
1350	BCL11B	7.689160e-01
1351	BCL2	1
1352	BCL2A1	1
1353	BCL2L1	1
1354	BCL2L10	1
1355	BCL2L11	4.089663e-01
1356	BCL2L12	6.099781e-01
1357	BCL2L13	1
Done

Running MutSig 2:
Scatter job 15: processing genes 1268 - 1357
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BAI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
Cons ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
KS ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
BAI3   10000 perm   4 sec   (2790 perm/sec)   p_kst 2.572000e-01   p_cons 2.083000e-01   p_joint 2.842000e-01

Outputting figure to mutsig2_images.part000000000015/BAI3.32_4689_10000_0.2572_0.2083_0.2842.png
                gene_name: BAI3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 2 percent done.
BAZ2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
Cons ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
KS ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
BAZ2B   10000 perm   3 sec   (3054 perm/sec)   p_kst 3.357000e-01   p_cons 3.212000e-01   p_joint 3.470000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ2B.20_6647_10000_0.3357_0.3212_0.347.png
                gene_name: BAZ2B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 4 percent done.
BCHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
BCHE   10000 perm   2 sec   (4350 perm/sec)   p_kst 3.121000e-01   p_cons 6.499000e-01   p_joint 4.349000e-01

Outputting figure to mutsig2_images.part000000000015/BCHE.14_1821_10000_0.3121_0.6499_0.4349.png
                gene_name: BCHE
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 6 percent done.
BBS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
Cons ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
BBS9   10000 perm   2 sec   (4138 perm/sec)   p_kst 2.584000e-01   p_cons 3.153000e-01   p_joint 2.606000e-01

Outputting figure to mutsig2_images.part000000000015/BBS9.12_2752_10000_0.2584_0.3153_0.2606.png
                gene_name: BBS9
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 8 percent done.
BCAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
Cons ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
KS ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
BCAS3   10000 perm   2 sec   (4018 perm/sec)   p_kst 9.027000e-01   p_cons 5.340000e-02   p_joint 1.525000e-01

Joint ci ratio: 6.168387e-02	ci left: 1.627927e-01	ci right 1.732040e-01	k: 3359	n:20000
Cons ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
KS ci ratio: 9.775825e-03	ci left: 8.849716e-01	ci right 8.937149e-01	k: 17788	n:20000
BCAS3   20000 perm   5 sec   (3657 perm/sec)   p_kst 8.894000e-01   p_cons 5.475000e-02   p_joint 1.679500e-01

Joint ci ratio: 4.486697e-02	ci left: 1.982623e-01	ci right 2.073953e-01	k: 6084	n:30000
Cons ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
KS ci ratio: 7.993764e-03	ci left: 8.854923e-01	ci right 8.926321e-01	k: 26673	n:30000
BCAS3   30000 perm   9 sec   (3527 perm/sec)   p_kst 8.891000e-01   p_cons 5.416667e-02   p_joint 2.028000e-01

Outputting figure to mutsig2_images.part000000000015/BCAS3.12_2883_30000_0.8891_0.054167_0.2028.png
                gene_name: BCAS3
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 10 percent done.
BAT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
BAT2L1   10000 perm   3 sec   (3243 perm/sec)   p_kst 7.330000e-01   p_cons 8.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAT2L1.11_6814_10000_0.733_0.8852_1.png
                gene_name: BAT2L1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
BAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
BAI1   10000 perm   3 sec   (3594 perm/sec)   p_kst 4.140000e-02   p_cons 9.310000e-02   p_joint 5.930000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
KS ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
BAI1   20000 perm   6 sec   (3293 perm/sec)   p_kst 3.900000e-02   p_cons 8.695000e-02   p_joint 1.635000e-02

Joint ci ratio: 9.885800e-02	ci left: 4.733292e-02	ci right 5.228806e-02	k: 1493	n:30000
Cons ci ratio: 7.041358e-02	ci left: 9.032681e-02	ci right 9.695213e-02	k: 2808	n:30000
KS ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
BAI1   30000 perm   9 sec   (3182 perm/sec)   p_kst 3.876667e-02   p_cons 9.360000e-02   p_joint 4.976667e-02

Joint ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
Cons ci ratio: 6.061774e-02	ci left: 9.177363e-02	ci right 9.753537e-02	k: 3785	n:40000
KS ci ratio: 9.775007e-02	ci left: 3.675764e-02	ci right 4.055971e-02	k: 1545	n:40000
BAI1   40000 perm   13 sec   (3110 perm/sec)   p_kst 3.862500e-02   p_cons 9.462500e-02   p_joint 2.585000e-02

Joint ci ratio: 1.023519e-01	ci left: 2.703942e-02	ci right 2.997566e-02	k: 1424	n:50000
Cons ci ratio: 5.534606e-02	ci left: 8.865083e-02	ci right 9.371675e-02	k: 4558	n:50000
KS ci ratio: 8.779743e-02	ci left: 3.665421e-02	ci right 4.003966e-02	k: 1916	n:50000
BAI1   50000 perm   16 sec   (3045 perm/sec)   p_kst 3.832000e-02   p_cons 9.116000e-02   p_joint 2.848000e-02

Joint ci ratio: 9.683931e-02	ci left: 2.529452e-02	ci right 2.788488e-02	k: 1594	n:60000
Cons ci ratio: 5.041142e-02	ci left: 8.923743e-02	ci right 9.386883e-02	k: 5492	n:60000
KS ci ratio: 8.063018e-02	ci left: 3.636978e-02	ci right 3.944179e-02	k: 2273	n:60000
BAI1   60000 perm   20 sec   (2990 perm/sec)   p_kst 3.788333e-02   p_cons 9.153333e-02   p_joint 2.656667e-02

Outputting figure to mutsig2_images.part000000000015/BAI1.10_4875_60000_0.037883_0.091533_0.026567.png
                gene_name: BAI1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 13 percent done.
BAT2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
Cons ci ratio: 1.094056e-02	ci left: 9.225516e-01	ci right 9.327976e-01	k: 9278	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
BAT2L2   10000 perm   4 sec   (2792 perm/sec)   p_kst 2.953000e-01   p_cons 9.278000e-01   p_joint 4.288000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2L2.10_8478_10000_0.2953_0.9278_0.4288.png
                gene_name: BAT2L2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 15 percent done.
BCAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
Cons ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KS ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
BCAS1   10000 perm   2 sec   (5205 perm/sec)   p_kst 9.749000e-01   p_cons 8.730000e-02   p_joint 4.669000e-01

Joint ci ratio: 3.364976e-02	ci left: 3.973882e-01	ci right 4.110397e-01	k: 8084	n:20000
Cons ci ratio: 8.749820e-02	ci left: 8.719570e-02	ci right 9.522361e-02	k: 1823	n:20000
KS ci ratio: 4.721199e-03	ci left: 9.694630e-01	ci right 9.740985e-01	k: 19437	n:20000
BCAS1   20000 perm   4 sec   (4648 perm/sec)   p_kst 9.718500e-01   p_cons 9.115000e-02   p_joint 4.042000e-01

Outputting figure to mutsig2_images.part000000000015/BCAS1.10_1799_20000_0.97185_0.09115_0.4042.png
                gene_name: BCAS1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 17 percent done.
BAGE2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
Cons ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
KS ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
BAGE2   10000 perm   2 sec   (5918 perm/sec)   p_kst 8.565000e-01   p_cons 4.400000e-01   p_joint 8.804000e-01

Outputting figure to mutsig2_images.part000000000015/BAGE2.8_346_10000_0.8565_0.44_0.8804.png
                gene_name: BAGE2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 19 percent done.
BAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
BAI2   10000 perm   3 sec   (3816 perm/sec)   p_kst 6.959000e-01   p_cons 6.686000e-01   p_joint 8.207000e-01

Outputting figure to mutsig2_images.part000000000015/BAI2.9_4882_10000_0.6959_0.6686_0.8207.png
                gene_name: BAI2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 21 percent done.
BAIAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
KS ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
BAIAP3   10000 perm   2 sec   (4066 perm/sec)   p_kst 8.860000e-02   p_cons 1.837000e-01   p_joint 8.460000e-02

Joint ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
Cons ci ratio: 5.956496e-02	ci left: 1.726714e-01	ci right 1.833224e-01	k: 3559	n:20000
KS ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
BAIAP3   20000 perm   5 sec   (3762 perm/sec)   p_kst 8.295000e-02   p_cons 1.779500e-01   p_joint 7.835000e-02

Outputting figure to mutsig2_images.part000000000015/BAIAP3.9_3700_20000_0.08295_0.17795_0.07835.png
                gene_name: BAIAP3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 23 percent done.
BAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
Cons ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KS ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
BAT2   10000 perm   3 sec   (3186 perm/sec)   p_kst 3.509000e-01   p_cons 4.971000e-01   p_joint 4.850000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2.9_6594_10000_0.3509_0.4971_0.485.png
                gene_name: BAT2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 25 percent done.
BACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
BACH2   10000 perm   2 sec   (4467 perm/sec)   p_kst 8.577000e-01   p_cons 4.589000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BACH2.8_2542_10000_0.8577_0.4589_1.png
                gene_name: BACH2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
BCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
BCAN   10000 perm   2 sec   (4798 perm/sec)   p_kst 5.812000e-01   p_cons 2.103000e-01   p_joint 5.153000e-01

Outputting figure to mutsig2_images.part000000000015/BCAN.8_2862_10000_0.5812_0.2103_0.5153.png
                gene_name: BCAN
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 29 percent done.
BCL11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
BCL11A   10000 perm   2 sec   (4650 perm/sec)   p_kst 3.802000e-01   p_cons 8.980000e-02   p_joint 1.838000e-01

Joint ci ratio: 5.720308e-02	ci left: 1.846823e-01	ci right 1.956079e-01	k: 3802	n:20000
Cons ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
KS ci ratio: 3.506661e-02	ci left: 3.777501e-01	ci right 3.912835e-01	k: 7690	n:20000
BCL11A   20000 perm   5 sec   (4187 perm/sec)   p_kst 3.845000e-01   p_cons 9.045000e-02   p_joint 1.901000e-01

Outputting figure to mutsig2_images.part000000000015/BCL11A.7_2630_20000_0.3845_0.09045_0.1901.png
                gene_name: BCL11A
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 31 percent done.
BAHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
BAHD1   10000 perm   2 sec   (4500 perm/sec)   p_kst 8.468000e-01   p_cons 1.247000e-01   p_joint 3.285000e-01

Joint ci ratio: 3.279855e-02	ci left: 4.097551e-01	ci right 4.234692e-01	k: 8332	n:20000
Cons ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
KS ci ratio: 1.183372e-02	ci left: 8.407704e-01	ci right 8.508289e-01	k: 16917	n:20000
BAHD1   20000 perm   5 sec   (4057 perm/sec)   p_kst 8.458500e-01   p_cons 1.166000e-01   p_joint 4.166000e-01

Outputting figure to mutsig2_images.part000000000015/BAHD1.6_2367_20000_0.84585_0.1166_0.4166.png
                gene_name: BAHD1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 33 percent done.
BAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
Cons ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
KS ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
BAT3   10000 perm   2 sec   (4430 perm/sec)   p_kst 1.242000e-01   p_cons 9.330000e-02   p_joint 7.180000e-02

Joint ci ratio: 1.030230e-01	ci left: 6.401222e-02	ci right 7.101415e-02	k: 1349	n:20000
Cons ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
KS ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
BAT3   20000 perm   5 sec   (3961 perm/sec)   p_kst 1.238000e-01   p_cons 9.195000e-02   p_joint 6.745000e-02

Joint ci ratio: 8.100847e-02	ci left: 6.945964e-02	ci right 7.535682e-02	k: 2171	n:30000
Cons ci ratio: 6.913119e-02	ci left: 9.344374e-02	ci right 1.001679e-01	k: 2903	n:30000
KS ci ratio: 6.046010e-02	ci left: 1.191718e-01	ci right 1.266347e-01	k: 3686	n:30000
BAT3   30000 perm   8 sec   (3797 perm/sec)   p_kst 1.228667e-01   p_cons 9.676667e-02   p_joint 7.236667e-02

Outputting figure to mutsig2_images.part000000000015/BAT3.6_3495_30000_0.12287_0.096767_0.072367.png
                gene_name: BAT3
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 35 percent done.
BAZ1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
Cons ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
KS ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
BAZ1B   10000 perm   2 sec   (4064 perm/sec)   p_kst 3.661000e-01   p_cons 5.908000e-01   p_joint 5.345000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ1B.6_4528_10000_0.3661_0.5908_0.5345.png
                gene_name: BAZ1B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 37 percent done.
BAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
Cons ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
KS ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
BAP1   10000 perm   2 sec   (4661 perm/sec)   p_kst 6.976000e-01   p_cons 7.629000e-01   p_joint 8.825000e-01

Outputting figure to mutsig2_images.part000000000015/BAP1.5_2258_10000_0.6976_0.7629_0.8825.png
                gene_name: BAP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 38 percent done.
BARHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
Cons ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
KS ci ratio: 1.508193e-02	ci left: 8.643742e-01	ci right 8.776089e-01	k: 8711	n:10000
BARHL2   10000 perm   2 sec   (5393 perm/sec)   p_kst 8.711000e-01   p_cons 1.394000e-01   p_joint 4.486000e-01

Outputting figure to mutsig2_images.part000000000015/BARHL2.5_1176_10000_0.8711_0.1394_0.4486.png
                gene_name: BARHL2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 40 percent done.
BASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
BASP1   10000 perm   2 sec   (6379 perm/sec)   p_kst 5.783000e-01   p_cons 1.352000e-01   p_joint 2.278000e-01

Outputting figure to mutsig2_images.part000000000015/BASP1.5_688_10000_0.5783_0.1352_0.2278.png
                gene_name: BASP1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 42 percent done.
BAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
BAT1   10000 perm   2 sec   (5257 perm/sec)   p_kst 8.768000e-01   p_cons 4.169000e-01   p_joint 7.550000e-01

Outputting figure to mutsig2_images.part000000000015/BAT1.5_1327_10000_0.8768_0.4169_0.755.png
                gene_name: BAT1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 44 percent done.
BBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
Cons ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
BBS2   10000 perm   2 sec   (5092 perm/sec)   p_kst 3.428000e-01   p_cons 5.071000e-01   p_joint 5.049000e-01

Outputting figure to mutsig2_images.part000000000015/BBS2.5_2234_10000_0.3428_0.5071_0.5049.png
                gene_name: BBS2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 46 percent done.
BCKDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
KS ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
BCKDHB   10000 perm   2 sec   (5631 perm/sec)   p_kst 7.308000e-01   p_cons 4.650000e-02   p_joint 2.266000e-01

Joint ci ratio: 5.996492e-02	ci left: 1.707446e-01	ci right 1.813498e-01	k: 3520	n:20000
Cons ci ratio: 1.305247e-01	ci left: 4.032708e-02	ci right 4.600670e-02	k: 862	n:20000
KS ci ratio: 1.694910e-02	ci left: 7.216240e-01	ci right 7.340097e-01	k: 14557	n:20000
BCKDHB   20000 perm   4 sec   (5021 perm/sec)   p_kst 7.278500e-01   p_cons 4.310000e-02   p_joint 1.760000e-01

Joint ci ratio: 4.607160e-02	ci left: 1.899019e-01	ci right 1.988907e-01	k: 5831	n:30000
Cons ci ratio: 1.081327e-01	ci left: 3.969301e-02	ci right 4.426290e-02	k: 1258	n:30000
KS ci ratio: 1.440665e-02	ci left: 7.064702e-01	ci right 7.167554e-01	k: 21349	n:30000
BCKDHB   30000 perm   6 sec   (4789 perm/sec)   p_kst 7.116333e-01   p_cons 4.193333e-02   p_joint 1.943667e-01

Joint ci ratio: 4.203651e-02	ci left: 1.748078e-01	ci right 1.823389e-01	k: 7142	n:40000
Cons ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
KS ci ratio: 1.247683e-02	ci left: 7.071579e-01	ci right 7.160614e-01	k: 28465	n:40000
BCKDHB   40000 perm   9 sec   (4634 perm/sec)   p_kst 7.116250e-01   p_cons 4.235000e-02   p_joint 1.785500e-01

Outputting figure to mutsig2_images.part000000000015/BCKDHB.5_1219_40000_0.71162_0.04235_0.17855.png
                gene_name: BCKDHB
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 48 percent done.
BCL11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942289e-02	ci left: 6.301003e-01	ci right 6.490183e-01	k: 6396	n:10000
Cons ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
KS ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
BCL11B   10000 perm   2 sec   (5081 perm/sec)   p_kst 4.116000e-01   p_cons 5.327000e-01   p_joint 6.396000e-01

Outputting figure to mutsig2_images.part000000000015/BCL11B.5_2701_10000_0.4116_0.5327_0.6396.png
                gene_name: BCL11B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 50 percent done.
BACE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
Cons ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
KS ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
BACE1   10000 perm   2 sec   (5401 perm/sec)   p_kst 1.541000e-01   p_cons 8.877000e-01   p_joint 2.325000e-01

Outputting figure to mutsig2_images.part000000000015/BACE1.4_1542_10000_0.1541_0.8877_0.2325.png
                gene_name: BACE1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 52 percent done.
BACH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
KS ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
BACH1   10000 perm   2 sec   (5483 perm/sec)   p_kst 6.807000e-01   p_cons 7.035000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BACH1.4_2227_10000_0.6807_0.7035_1.png
                gene_name: BACH1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
BAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
Cons ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KS ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
BAG5   10000 perm   2 sec   (5666 perm/sec)   p_kst 3.012000e-01   p_cons 3.823000e-01   p_joint 3.528000e-01

Outputting figure to mutsig2_images.part000000000015/BAG5.4_1475_10000_0.3012_0.3823_0.3528.png
                gene_name: BAG5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 56 percent done.
BANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
BANK1   10000 perm   2 sec   (5402 perm/sec)   p_kst 7.539000e-01   p_cons 8.914000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BANK1.4_2422_10000_0.7539_0.8914_1.png
                gene_name: BANK1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
BARD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
Cons ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
KS ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
BARD1   10000 perm   2 sec   (5149 perm/sec)   p_kst 5.349000e-01   p_cons 5.595000e-01   p_joint 8.151000e-01

Outputting figure to mutsig2_images.part000000000015/BARD1.4_2378_10000_0.5349_0.5595_0.8151.png
                gene_name: BARD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 60 percent done.
BBS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
KS ci ratio: 1.611926e-02	ci left: 8.483534e-01	ci right 8.622389e-01	k: 8554	n:10000
BBS10   10000 perm   2 sec   (5543 perm/sec)   p_kst 8.554000e-01   p_cons 5.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBS10.4_2180_10000_0.8554_0.5828_1.png
                gene_name: BBS10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
BBS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
Cons ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
BBS7   10000 perm   2 sec   (5523 perm/sec)   p_kst 5.223000e-01   p_cons 2.766000e-01   p_joint 5.198000e-01

Outputting figure to mutsig2_images.part000000000015/BBS7.4_2229_10000_0.5223_0.2766_0.5198.png
                gene_name: BBS7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 63 percent done.
BBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
Cons ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
KS ci ratio: 6.448821e-02	ci left: 2.610197e-01	ci right 2.785146e-01	k: 2697	n:10000
BBX   10000 perm   2 sec   (5060 perm/sec)   p_kst 2.697000e-01   p_cons 5.951000e-01   p_joint 3.597000e-01

Outputting figure to mutsig2_images.part000000000015/BBX.4_2886_10000_0.2697_0.5951_0.3597.png
                gene_name: BBX
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 65 percent done.
BAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
Cons ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
KS ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
BAG3   10000 perm   2 sec   (5717 perm/sec)   p_kst 3.790000e-02   p_cons 3.340000e-01   p_joint 7.230000e-02

Joint ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
Cons ci ratio: 3.947352e-02	ci left: 3.236824e-01	ci right 3.367670e-01	k: 6604	n:20000
KS ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
BAG3   20000 perm   4 sec   (4971 perm/sec)   p_kst 3.920000e-02   p_cons 3.302000e-01   p_joint 6.600000e-02

Joint ci ratio: 7.028941e-02	ci left: 9.062205e-02	ci right 9.725683e-02	k: 2817	n:30000
Cons ci ratio: 3.226281e-02	ci left: 3.244468e-01	ci right 3.351195e-01	k: 9893	n:30000
KS ci ratio: 1.128970e-01	ci left: 3.644823e-02	ci right 4.084169e-02	k: 1158	n:30000
BAG3   30000 perm   6 sec   (4714 perm/sec)   p_kst 3.860000e-02   p_cons 3.297667e-01   p_joint 9.390000e-02

Joint ci ratio: 8.364377e-02	ci left: 4.986876e-02	ci right 5.424656e-02	k: 2081	n:40000
Cons ci ratio: 2.721540e-02	ci left: 3.368519e-01	ci right 3.461711e-01	k: 13660	n:40000
KS ci ratio: 9.503326e-02	ci left: 3.885780e-02	ci right 4.275922e-02	k: 1631	n:40000
BAG3   40000 perm   9 sec   (4553 perm/sec)   p_kst 4.077500e-02   p_cons 3.415000e-01   p_joint 5.202500e-02

Outputting figure to mutsig2_images.part000000000015/BAG3.3_1744_40000_0.040775_0.3415_0.052025.png
                gene_name: BAG3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 67 percent done.
BAIAP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
BAIAP2L1   10000 perm   2 sec   (5929 perm/sec)   p_kst 8.744000e-01   p_cons 3.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAIAP2L1.3_1592_10000_0.8744_0.3528_1.png
                gene_name: BAIAP2L1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
BAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
Cons ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KS ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
BAT4   10000 perm   2 sec   (5886 perm/sec)   p_kst 7.348000e-01   p_cons 9.620000e-02   p_joint 3.121000e-01

Joint ci ratio: 3.717981e-02	ci left: 3.505553e-01	ci right 3.638863e-01	k: 7144	n:20000
Cons ci ratio: 8.666425e-02	ci left: 8.876415e-02	ci right 9.685468e-02	k: 1855	n:20000
KS ci ratio: 1.649827e-02	ci left: 7.322495e-01	ci right 7.444811e-01	k: 14768	n:20000
BAT4   20000 perm   4 sec   (5221 perm/sec)   p_kst 7.384000e-01   p_cons 9.275000e-02   p_joint 3.572000e-01

Outputting figure to mutsig2_images.part000000000015/BAT4.3_1079_20000_0.7384_0.09275_0.3572.png
                gene_name: BAT4
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 71 percent done.
BAZ1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
KS ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
BAZ1A   10000 perm   2 sec   (4353 perm/sec)   p_kst 6.017000e-01   p_cons 3.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAZ1A.3_4775_10000_0.6017_0.399_1.png
                gene_name: BAZ1A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
BAZ2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
Cons ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
KS ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
BAZ2A   10000 perm   3 sec   (3905 perm/sec)   p_kst 3.598000e-01   p_cons 9.715000e-01   p_joint 6.043000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ2A.3_5834_10000_0.3598_0.9715_0.6043.png
                gene_name: BAZ2A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 75 percent done.
BBOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
KS ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
BBOX1   10000 perm   2 sec   (6202 perm/sec)   p_kst 4.279000e-01   p_cons 8.288000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBOX1.3_1192_10000_0.4279_0.8288_1.png
                gene_name: BBOX1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
BCAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.720472e-02	ci left: 6.656194e-01	ci right 6.840787e-01	k: 6749	n:10000
Cons ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
BCAR3   10000 perm   2 sec   (5468 perm/sec)   p_kst 5.140000e-01   p_cons 3.970000e-01   p_joint 6.749000e-01

Outputting figure to mutsig2_images.part000000000015/BCAR3.3_2522_10000_0.514_0.397_0.6749.png
                gene_name: BCAR3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 79 percent done.
BCAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
KS ci ratio: 1.452651e-02	ci left: 8.727542e-01	ci right 8.856240e-01	k: 8793	n:10000
BCAS2   10000 perm   2 sec   (6513 perm/sec)   p_kst 8.793000e-01   p_cons 3.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCAS2.3_706_10000_0.8793_0.3514_1.png
                gene_name: BCAS2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
BACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151716e-02	ci left: 9.151276e-01	ci right 9.258259e-01	k: 9206	n:10000
Cons ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
KS ci ratio: 1.514897e-02	ci left: 8.633528e-01	ci right 8.766308e-01	k: 8701	n:10000
BACE2   10000 perm   2 sec   (6068 perm/sec)   p_kst 8.701000e-01   p_cons 9.022000e-01   p_joint 9.206000e-01

Outputting figure to mutsig2_images.part000000000015/BACE2.2_1593_10000_0.8701_0.9022_0.9206.png
                gene_name: BACE2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 83 percent done.
BAHCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
Cons ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
BAHCC1   10000 perm   3 sec   (3575 perm/sec)   p_kst 7.204000e-01   p_cons 6.620000e-02   p_joint 1.382000e-01

Joint ci ratio: 7.672330e-02	ci left: 1.110031e-01	ci right 1.199090e-01	k: 2308	n:20000
Cons ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
KS ci ratio: 1.710744e-02	ci left: 7.178985e-01	ci right 7.303362e-01	k: 14483	n:20000
BAHCC1   20000 perm   6 sec   (3257 perm/sec)   p_kst 7.241500e-01   p_cons 7.330000e-02   p_joint 1.154000e-01

Outputting figure to mutsig2_images.part000000000015/BAHCC1.2_7770_20000_0.72415_0.0733_0.1154.png
                gene_name: BAHCC1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 85 percent done.
BAIAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 1.249691e-02	ci left: 9.019602e-01	ci right 9.134010e-01	k: 9078	n:10000
BAIAP2   10000 perm   2 sec   (6187 perm/sec)   p_kst 9.078000e-01   p_cons 8.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAIAP2.2_1808_10000_0.9078_0.8438_1.png
                gene_name: BAIAP2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
BAMBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
Cons ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
KS ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
BAMBI   10000 perm   2 sec   (6637 perm/sec)   p_kst 6.234000e-01   p_cons 8.270000e-01   p_joint 7.004000e-01

Outputting figure to mutsig2_images.part000000000015/BAMBI.2_795_10000_0.6234_0.827_0.7004.png
                gene_name: BAMBI
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 88 percent done.
BARHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
BARHL1   10000 perm   2 sec   (6546 perm/sec)   p_kst 1.133000e-01   p_cons 3.772000e-01   p_joint 1

Joint ci ratio: 1.644063e-02	ci left: 7.336095e-01	ci right 7.458207e-01	k: 14795	n:20000
Cons ci ratio: 3.543613e-02	ci left: 3.728175e-01	ci right 3.863176e-01	k: 7591	n:20000
KS ci ratio: 7.804776e-02	ci left: 1.076118e-01	ci right 1.164013e-01	k: 2239	n:20000
BARHL1   20000 perm   4 sec   (5622 perm/sec)   p_kst 1.119500e-01   p_cons 3.795500e-01   p_joint 7.397500e-01

Outputting figure to mutsig2_images.part000000000015/BARHL1.2_996_20000_0.11195_0.37955_0.73975.png
                gene_name: BARHL1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 90 percent done.
BBS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
Cons ci ratio: 3.380769e-02	ci left: 5.636361e-01	ci right 5.831211e-01	k: 5734	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
BBS12   10000 perm   2 sec   (5851 perm/sec)   p_kst 2.779000e-01   p_cons 5.734000e-01   p_joint 4.391000e-01

Outputting figure to mutsig2_images.part000000000015/BBS12.2_2137_10000_0.2779_0.5734_0.4391.png
                gene_name: BBS12
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 92 percent done.
BCAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
BCAP29   10000 perm   2 sec   (6377 perm/sec)   p_kst 3.320000e-01   p_cons 5.500000e-03   p_joint 2.820000e-02

Joint ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
Cons ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
KS ci ratio: 3.926477e-02	ci left: 3.260204e-01	ci right 3.391283e-01	k: 6651	n:20000
BCAP29   20000 perm   4 sec   (5539 perm/sec)   p_kst 3.325500e-01   p_cons 7.300000e-03   p_joint 2.790000e-02

Joint ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
Cons ci ratio: 2.536194e-01	ci left: 6.898193e-03	ci right 8.932175e-03	k: 236	n:30000
KS ci ratio: 3.204992e-02	ci left: 3.273679e-01	ci right 3.380645e-01	k: 9981	n:30000
BCAP29   30000 perm   6 sec   (5236 perm/sec)   p_kst 3.327000e-01   p_cons 7.866667e-03   p_joint 3.083333e-02

Joint ci ratio: 8.693079e-02	ci left: 4.626824e-02	ci right 5.049763e-02	k: 1934	n:40000
Cons ci ratio: 2.168913e-01	ci left: 7.221300e-03	ci right 9.001222e-03	k: 323	n:40000
KS ci ratio: 2.764909e-02	ci left: 3.298012e-01	ci right 3.390728e-01	k: 13377	n:40000
BCAP29   40000 perm   8 sec   (5046 perm/sec)   p_kst 3.344250e-01   p_cons 8.075000e-03   p_joint 4.835000e-02

Joint ci ratio: 7.011205e-02	ci left: 5.677331e-02	ci right 6.091809e-02	k: 2941	n:50000
Cons ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
KS ci ratio: 2.476513e-02	ci left: 3.296663e-01	ci right 3.379530e-01	k: 16690	n:50000
BCAP29   50000 perm   10 sec   (4898 perm/sec)   p_kst 3.338000e-01   p_cons 6.400000e-03   p_joint 5.882000e-02

Joint ci ratio: 4.696424e-02	ci left: 1.015848e-01	ci right 1.064869e-01	k: 6241	n:60000
Cons ci ratio: 1.963347e-01	ci left: 5.951873e-03	ci right 7.263203e-03	k: 395	n:60000
KS ci ratio: 2.260839e-02	ci left: 3.300099e-01	ci right 3.375729e-01	k: 20027	n:60000
BCAP29   60000 perm   13 sec   (4760 perm/sec)   p_kst 3.337833e-01   p_cons 6.583333e-03   p_joint 1.040167e-01

Joint ci ratio: 5.963968e-02	ci left: 5.639232e-02	ci right 5.987299e-02	k: 4068	n:70000
Cons ci ratio: 1.833758e-01	ci left: 5.890813e-03	ci right 7.093502e-03	k: 453	n:70000
KS ci ratio: 2.094879e-02	ci left: 3.299217e-01	ci right 3.369206e-01	k: 23339	n:70000
BCAP29   70000 perm   15 sec   (4630 perm/sec)   p_kst 3.334143e-01   p_cons 6.471429e-03   p_joint 5.811429e-02

Joint ci ratio: 6.209611e-02	ci left: 4.597466e-02	ci right 4.893327e-02	k: 3795	n:80000
Cons ci ratio: 1.728548e-01	ci left: 5.835200e-03	ci right 6.951050e-03	k: 510	n:80000
KS ci ratio: 1.958880e-02	ci left: 3.303076e-01	ci right 3.368544e-01	k: 26686	n:80000
BCAP29   80000 perm   18 sec   (4527 perm/sec)   p_kst 3.335750e-01   p_cons 6.375000e-03   p_joint 4.743750e-02

Joint ci ratio: 5.844073e-02	ci left: 4.621800e-02	ci right 4.901125e-02	k: 4284	n:90000
Cons ci ratio: 1.638137e-01	ci left: 5.804144e-03	ci right 6.850280e-03	k: 568	n:90000
KS ci ratio: 1.844538e-02	ci left: 3.310515e-01	ci right 3.372258e-01	k: 30072	n:90000
BCAP29   90000 perm   20 sec   (4429 perm/sec)   p_kst 3.341333e-01   p_cons 6.311111e-03   p_joint 4.760000e-02

Joint ci ratio: 6.685176e-02	ci left: 3.212766e-02	ci right 3.435953e-02	k: 3323	n:100000
Cons ci ratio: 1.574533e-01	ci left: 5.674810e-03	ci right 6.654166e-03	k: 615	n:100000
KS ci ratio: 1.751908e-02	ci left: 3.306975e-01	ci right 3.365522e-01	k: 33362	n:100000
BCAP29   100000 perm   23 sec   (4335 perm/sec)   p_kst 3.336200e-01   p_cons 6.150000e-03   p_joint 3.323000e-02

Joint ci ratio: 6.368126e-02	ci left: 3.223854e-02	ci right 3.436797e-02	k: 3662	n:110000
Cons ci ratio: 1.494175e-01	ci left: 5.753394e-03	ci right 6.691108e-03	k: 683	n:110000
KS ci ratio: 1.670218e-02	ci left: 3.308770e-01	ci right 3.364590e-01	k: 36703	n:110000
BCAP29   110000 perm   26 sec   (4249 perm/sec)   p_kst 3.336636e-01   p_cons 6.209091e-03   p_joint 3.329091e-02

Joint ci ratio: 6.650993e-02	ci left: 2.719682e-02	ci right 2.907607e-02	k: 3375	n:120000
Cons ci ratio: 1.426896e-01	ci left: 5.803863e-03	ci right 6.703582e-03	k: 749	n:120000
KS ci ratio: 1.599434e-02	ci left: 3.309072e-01	ci right 3.362508e-01	k: 40029	n:120000
BCAP29   120000 perm   29 sec   (4170 perm/sec)   p_kst 3.335750e-01   p_cons 6.241667e-03   p_joint 2.812500e-02

Joint ci ratio: 6.456986e-02	ci left: 2.667831e-02	ci right 2.846593e-02	k: 3583	n:130000
Cons ci ratio: 1.386018e-01	ci left: 5.691362e-03	ci right 6.546278e-03	k: 794	n:130000
KS ci ratio: 1.537400e-02	ci left: 3.308065e-01	ci right 3.359394e-01	k: 43338	n:130000
BCAP29   130000 perm   32 sec   (4098 perm/sec)   p_kst 3.333692e-01   p_cons 6.107692e-03   p_joint 2.756154e-02

Joint ci ratio: 9.377140e-02	ci left: 1.175011e-02	ci right 1.291307e-02	k: 1725	n:140000
Cons ci ratio: 1.349268e-01	ci left: 5.588349e-03	ci right 6.403744e-03	k: 838	n:140000
KS ci ratio: 1.483520e-02	ci left: 3.302888e-01	ci right 3.352324e-01	k: 46586	n:140000
BCAP29   140000 perm   35 sec   (4024 perm/sec)   p_kst 3.327571e-01   p_cons 5.985714e-03   p_joint 1.232143e-02

Joint ci ratio: 9.082295e-02	ci left: 1.170922e-02	ci right 1.282975e-02	k: 1839	n:150000
Cons ci ratio: 1.313050e-01	ci left: 5.518678e-03	ci right 6.300606e-03	k: 885	n:150000
KS ci ratio: 1.434457e-02	ci left: 3.299894e-01	ci right 3.347638e-01	k: 49856	n:150000
BCAP29   150000 perm   38 sec   (3956 perm/sec)   p_kst 3.323733e-01   p_cons 5.900000e-03   p_joint 1.226000e-02

Joint ci ratio: 5.904109e-02	ci left: 2.602029e-02	ci right 2.760942e-02	k: 4289	n:160000
Cons ci ratio: 1.270725e-01	ci left: 5.536646e-03	ci right 6.293926e-03	k: 945	n:160000
KS ci ratio: 1.388923e-02	ci left: 3.300605e-01	ci right 3.346831e-01	k: 53179	n:160000
BCAP29   160000 perm   41 sec   (3887 perm/sec)   p_kst 3.323687e-01   p_cons 5.906250e-03   p_joint 2.680625e-02

Joint ci ratio: 8.542400e-02	ci left: 1.171234e-02	ci right 1.276322e-02	k: 2079	n:170000
Cons ci ratio: 1.229176e-01	ci left: 5.581368e-03	ci right 6.317987e-03	k: 1010	n:170000
KS ci ratio: 1.346699e-02	ci left: 3.303779e-01	ci right 3.348631e-01	k: 56545	n:170000
BCAP29   170000 perm   44 sec   (3821 perm/sec)   p_kst 3.326176e-01   p_cons 5.941176e-03   p_joint 1.222941e-02

Joint ci ratio: 8.338893e-02	ci left: 1.162177e-02	ci right 1.263847e-02	k: 2182	n:180000
Cons ci ratio: 1.195933e-01	ci left: 5.578353e-03	ci right 6.293256e-03	k: 1067	n:180000
KS ci ratio: 1.309334e-02	ci left: 3.302459e-01	ci right 3.346039e-01	k: 59836	n:180000
BCAP29   180000 perm   48 sec   (3760 perm/sec)   p_kst 3.324222e-01   p_cons 5.927778e-03   p_joint 1.212222e-02

Joint ci ratio: 8.124121e-02	ci left: 1.161321e-02	ci right 1.260176e-02	k: 2299	n:190000
Cons ci ratio: 1.164729e-01	ci left: 5.581007e-03	ci right 6.276303e-03	k: 1125	n:190000
KS ci ratio: 1.274552e-02	ci left: 3.302555e-01	ci right 3.344970e-01	k: 63151	n:190000
BCAP29   190000 perm   52 sec   (3687 perm/sec)   p_kst 3.323737e-01   p_cons 5.921053e-03   p_joint 1.210000e-02

Joint ci ratio: 7.916847e-02	ci left: 1.163032e-02	ci right 1.259390e-02	k: 2421	n:200000
Cons ci ratio: 1.137297e-01	ci left: 5.569037e-03	ci right 6.245404e-03	k: 1180	n:200000
KS ci ratio: 1.242501e-02	ci left: 3.302306e-01	ci right 3.343643e-01	k: 66459	n:200000
BCAP29   200000 perm   55 sec   (3626 perm/sec)   p_kst 3.322950e-01   p_cons 5.900000e-03   p_joint 1.210500e-02

Joint ci ratio: 7.749374e-02	ci left: 1.157136e-02	ci right 1.250885e-02	k: 2527	n:210000
Cons ci ratio: 1.115810e-01	ci left: 5.516712e-03	ci right 6.173232e-03	k: 1226	n:210000
KS ci ratio: 1.212895e-02	ci left: 3.301569e-01	ci right 3.341905e-01	k: 69756	n:210000
BCAP29   210000 perm   59 sec   (3566 perm/sec)   p_kst 3.321714e-01   p_cons 5.838095e-03   p_joint 1.203333e-02

Joint ci ratio: 7.545839e-02	ci left: 1.166068e-02	ci right 1.257951e-02	k: 2665	n:220000
Cons ci ratio: 1.088211e-01	ci left: 5.544427e-03	ci right 6.186879e-03	k: 1289	n:220000
KS ci ratio: 1.185200e-02	ci left: 3.301319e-01	ci right 3.340725e-01	k: 73062	n:220000
BCAP29   220000 perm   63 sec   (3508 perm/sec)   p_kst 3.321000e-01   p_cons 5.859091e-03   p_joint 1.211364e-02

Joint ci ratio: 7.360197e-02	ci left: 1.173400e-02	ci right 1.263488e-02	k: 2801	n:230000
Cons ci ratio: 1.061381e-01	ci left: 5.582613e-03	ci right 6.212545e-03	k: 1355	n:230000
KS ci ratio: 1.159058e-02	ci left: 3.302099e-01	ci right 3.340639e-01	k: 76391	n:230000
BCAP29   230000 perm   67 sec   (3456 perm/sec)   p_kst 3.321348e-01   p_cons 5.891304e-03   p_joint 1.217826e-02

Joint ci ratio: 4.799655e-02	ci left: 2.639224e-02	ci right 2.769422e-02	k: 6489	n:240000
Cons ci ratio: 1.038280e-01	ci left: 5.597500e-03	ci right 6.214525e-03	k: 1416	n:240000
KS ci ratio: 1.135394e-02	ci left: 3.299619e-01	ci right 3.337338e-01	k: 79643	n:240000
BCAP29   240000 perm   70 sec   (3406 perm/sec)   p_kst 3.318458e-01   p_cons 5.900000e-03   p_joint 2.703750e-02

Joint ci ratio: 4.803842e-02	ci left: 2.532040e-02	ci right 2.657062e-02	k: 6485	n:250000
Cons ci ratio: 1.022909e-01	ci left: 5.541158e-03	ci right 6.142386e-03	k: 1459	n:250000
KS ci ratio: 1.112269e-02	ci left: 3.300741e-01	ci right 3.337698e-01	k: 82980	n:250000
BCAP29   250000 perm   74 sec   (3359 perm/sec)   p_kst 3.319200e-01   p_cons 5.836000e-03   p_joint 2.594000e-02

Joint ci ratio: 4.713583e-02	ci left: 2.530043e-02	ci right 2.652555e-02	k: 6736	n:260000
Cons ci ratio: 1.000859e-01	ci left: 5.571714e-03	ci right 6.162460e-03	k: 1524	n:260000
KS ci ratio: 1.090870e-02	ci left: 3.300285e-01	ci right 3.336522e-01	k: 86278	n:260000
BCAP29   260000 perm   79 sec   (3311 perm/sec)   p_kst 3.318385e-01   p_cons 5.861538e-03   p_joint 2.590769e-02

Joint ci ratio: 4.618400e-02	ci left: 2.538834e-02	ci right 2.659223e-02	k: 7016	n:270000
Cons ci ratio: 9.826661e-02	ci left: 5.571229e-03	ci right 6.150567e-03	k: 1581	n:270000
KS ci ratio: 1.070831e-02	ci left: 3.299166e-01	ci right 3.334722e-01	k: 89557	n:270000
BCAP29   270000 perm   83 sec   (3264 perm/sec)   p_kst 3.316926e-01   p_cons 5.855556e-03   p_joint 2.598519e-02

Outputting figure to mutsig2_images.part000000000015/BCAP29.2_1079_270000_0.33169_0.0058556_0.025985.png
                gene_name: BCAP29
               theta_stop: 0.098 
                    nperm: 270000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0059 
      ci_cons_bounds_left: 0.0056 
     ci_cons_bounds_right: 0.0062 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 94 percent done.
BCAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
BCAR1   10000 perm   2 sec   (5192 perm/sec)   p_kst 2.232000e-01   p_cons 8.600000e-03   p_joint 1.220000e-02

Joint ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
Cons ci ratio: 2.837806e-01	ci left: 8.109344e-03	ci right 1.083612e-02	k: 188	n:20000
KS ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
BCAR1   20000 perm   4 sec   (4689 perm/sec)   p_kst 2.184500e-01   p_cons 9.400000e-03   p_joint 1.320000e-02

Joint ci ratio: 2.240543e-01	ci left: 8.968019e-03	ci right 1.126168e-02	k: 302	n:30000
Cons ci ratio: 2.344363e-01	ci left: 8.150696e-03	ci right 1.034592e-02	k: 276	n:30000
KS ci ratio: 4.269753e-02	ci left: 2.146285e-01	ci right 2.240259e-01	k: 6579	n:30000
BCAR1   30000 perm   7 sec   (4472 perm/sec)   p_kst 2.193000e-01   p_cons 9.200000e-03   p_joint 1.006667e-02

Joint ci ratio: 7.327193e-02	ci left: 6.432309e-02	ci right 6.924003e-02	k: 2670	n:40000
Cons ci ratio: 2.033995e-01	ci left: 8.263895e-03	ci right 1.015838e-02	k: 367	n:40000
KS ci ratio: 3.693767e-02	ci left: 2.156256e-01	ci right 2.237652e-01	k: 8787	n:40000
BCAR1   40000 perm   9 sec   (4349 perm/sec)   p_kst 2.196750e-01   p_cons 9.175000e-03   p_joint 6.675000e-02

Joint ci ratio: 8.102361e-02	ci left: 4.290519e-02	ci right 4.654790e-02	k: 2235	n:50000
Cons ci ratio: 1.807405e-01	ci left: 8.477237e-03	ci right 1.018046e-02	k: 465	n:50000
KS ci ratio: 3.307475e-02	ci left: 2.156796e-01	ci right 2.229530e-01	k: 10965	n:50000
BCAR1   50000 perm   12 sec   (4240 perm/sec)   p_kst 2.193000e-01   p_cons 9.300000e-03   p_joint 4.470000e-02

Joint ci ratio: 9.579549e-02	ci left: 2.584789e-02	ci right 2.846478e-02	k: 1628	n:60000
Cons ci ratio: 1.605871e-01	ci left: 9.043231e-03	ci right 1.063805e-02	k: 589	n:60000
KS ci ratio: 3.007621e-02	ci left: 2.173206e-01	ci right 2.239732e-01	k: 13238	n:60000
BCAR1   60000 perm   14 sec   (4140 perm/sec)   p_kst 2.206333e-01   p_cons 9.816667e-03   p_joint 2.713333e-02

Joint ci ratio: 1.036750e-01	ci left: 1.897567e-02	ci right 2.106438e-02	k: 1400	n:70000
Cons ci ratio: 1.510571e-01	ci left: 8.808395e-03	ci right 1.026127e-02	k: 666	n:70000
KS ci ratio: 2.792115e-02	ci left: 2.166373e-01	ci right 2.227859e-01	k: 15379	n:70000
BCAR1   70000 perm   17 sec   (4063 perm/sec)   p_kst 2.197000e-01   p_cons 9.514286e-03   p_joint 2.000000e-02

Joint ci ratio: 7.259819e-02	ci left: 3.388450e-02	ci right 3.644936e-02	k: 2812	n:80000
Cons ci ratio: 1.402174e-01	ci left: 8.996219e-03	ci right 1.036469e-02	k: 773	n:80000
KS ci ratio: 2.611704e-02	ci left: 2.168473e-01	ci right 2.225981e-01	k: 17577	n:80000
BCAR1   80000 perm   20 sec   (3989 perm/sec)   p_kst 2.197125e-01   p_cons 9.662500e-03   p_joint 3.515000e-02

Joint ci ratio: 7.022064e-02	ci left: 3.229023e-02	ci right 3.465107e-02	k: 3011	n:90000
Cons ci ratio: 1.314195e-01	ci left: 9.145205e-03	ci right 1.044224e-02	k: 880	n:90000
KS ci ratio: 2.465395e-02	ci left: 2.165892e-01	ci right 2.220067e-01	k: 19736	n:90000
BCAR1   90000 perm   23 sec   (3918 perm/sec)   p_kst 2.192889e-01   p_cons 9.777778e-03   p_joint 3.345556e-02

Joint ci ratio: 6.872384e-02	ci left: 3.042604e-02	ci right 3.260124e-02	k: 3150	n:100000
Cons ci ratio: 1.253163e-01	ci left: 9.082415e-03	ci right 1.030628e-02	k: 968	n:100000
KS ci ratio: 2.335470e-02	ci left: 2.172266e-01	ci right 2.223697e-01	k: 21979	n:100000
BCAR1   100000 perm   26 sec   (3849 perm/sec)   p_kst 2.197900e-01   p_cons 9.680000e-03   p_joint 3.150000e-02

Joint ci ratio: 1.023704e-01	ci left: 1.248069e-02	ci right 1.383607e-02	k: 1446	n:110000
Cons ci ratio: 1.188611e-01	ci left: 9.208622e-03	ci right 1.038108e-02	k: 1076	n:110000
KS ci ratio: 2.228910e-02	ci left: 2.170207e-01	ci right 2.219214e-01	k: 24141	n:110000
BCAR1   110000 perm   29 sec   (3784 perm/sec)   p_kst 2.194636e-01   p_cons 9.781818e-03   p_joint 1.314545e-02

Joint ci ratio: 1.017181e-01	ci left: 1.160278e-02	ci right 1.285430e-02	k: 1466	n:120000
Cons ci ratio: 1.137476e-01	ci left: 9.242251e-03	ci right 1.036496e-02	k: 1175	n:120000
KS ci ratio: 2.135668e-02	ci left: 2.168619e-01	ci right 2.215516e-01	k: 26304	n:120000
BCAR1   120000 perm   32 sec   (3722 perm/sec)   p_kst 2.192000e-01   p_cons 9.791667e-03   p_joint 1.221667e-02

Joint ci ratio: 9.786018e-02	ci left: 1.159529e-02	ci right 1.279584e-02	k: 1584	n:130000
Cons ci ratio: 1.097647e-01	ci left: 9.181818e-03	ci right 1.025561e-02	k: 1262	n:130000
KS ci ratio: 2.053318e-02	ci left: 2.167160e-01	ci right 2.212196e-01	k: 28465	n:130000
BCAR1   130000 perm   36 sec   (3655 perm/sec)   p_kst 2.189615e-01   p_cons 9.707692e-03   p_joint 1.218462e-02

Joint ci ratio: 9.700963e-02	ci left: 1.096898e-02	ci right 1.209424e-02	k: 1613	n:140000
Cons ci ratio: 1.058173e-01	ci left: 9.193206e-03	ci right 1.022725e-02	k: 1358	n:140000
KS ci ratio: 1.979110e-02	ci left: 2.167149e-01	ci right 2.210539e-01	k: 30643	n:140000
BCAR1   140000 perm   39 sec   (3589 perm/sec)   p_kst 2.188786e-01   p_cons 9.700000e-03   p_joint 1.152143e-02

Joint ci ratio: 7.942416e-02	ci left: 1.534491e-02	ci right 1.662057e-02	k: 2396	n:150000
Cons ci ratio: 1.029844e-01	ci left: 9.073733e-03	ci right 1.006536e-02	k: 1434	n:150000
KS ci ratio: 1.910656e-02	ci left: 2.170288e-01	ci right 2.212221e-01	k: 32868	n:150000
BCAR1   150000 perm   42 sec   (3535 perm/sec)   p_kst 2.191200e-01   p_cons 9.560000e-03   p_joint 1.597333e-02

Joint ci ratio: 7.696026e-02	ci left: 1.534179e-02	ci right 1.657584e-02	k: 2552	n:160000
Cons ci ratio: 1.003003e-01	ci left: 8.981711e-03	ci right 9.936192e-03	k: 1512	n:160000
KS ci ratio: 1.847969e-02	ci left: 2.174676e-01	ci right 2.215300e-01	k: 35119	n:160000
BCAR1   160000 perm   46 sec   (3482 perm/sec)   p_kst 2.194937e-01   p_cons 9.450000e-03   p_joint 1.595000e-02

Joint ci ratio: 7.807513e-02	ci left: 1.404094e-02	ci right 1.518746e-02	k: 2483	n:170000
Cons ci ratio: 9.683726e-02	ci left: 9.084507e-03	ci right 1.001469e-02	k: 1622	n:170000
KS ci ratio: 1.793286e-02	ci left: 2.174346e-01	ci right 2.213750e-01	k: 37298	n:170000
BCAR1   170000 perm   50 sec   (3432 perm/sec)   p_kst 2.194000e-01   p_cons 9.541176e-03   p_joint 1.460588e-02

Outputting figure to mutsig2_images.part000000000015/BCAR1.2_3038_170000_0.2194_0.0095412_0.014606.png
                gene_name: BCAR1
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.0095 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 96 percent done.
BCKDK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
BCKDK   10000 perm   2 sec   (6221 perm/sec)   p_kst 1.900000e-02   p_cons 3.755000e-01   p_joint 3.380000e-02

Joint ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
Cons ci ratio: 3.582292e-02	ci left: 3.677361e-01	ci right 3.812004e-01	k: 7489	n:20000
KS ci ratio: 1.973228e-01	ci left: 1.743844e-02	ci right 2.130309e-02	k: 386	n:20000
BCKDK   20000 perm   4 sec   (5437 perm/sec)   p_kst 1.930000e-02   p_cons 3.744500e-01   p_joint 3.370000e-02

Joint ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
Cons ci ratio: 2.925965e-02	ci left: 3.688195e-01	ci right 3.798048e-01	k: 11229	n:30000
KS ci ratio: 1.616122e-01	ci left: 1.767718e-02	ci right 2.081690e-02	k: 576	n:30000
BCKDK   30000 perm   6 sec   (5132 perm/sec)   p_kst 1.920000e-02   p_cons 3.743000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.004506e-01	ci left: 3.482981e-02	ci right 3.853785e-02	k: 1466	n:40000
Cons ci ratio: 2.449462e-02	ci left: 3.855400e-01	ci right 3.951259e-01	k: 15613	n:40000
KS ci ratio: 1.407400e-01	ci left: 1.768459e-02	ci right 2.038588e-02	k: 760	n:40000
BCKDK   40000 perm   8 sec   (4921 perm/sec)   p_kst 1.900000e-02   p_cons 3.903250e-01   p_joint 3.665000e-02

Joint ci ratio: 9.012050e-02	ci left: 3.481451e-02	ci right 3.811959e-02	k: 1822	n:50000
Cons ci ratio: 2.195151e-02	ci left: 3.851225e-01	ci right 3.936904e-01	k: 19470	n:50000
KS ci ratio: 1.254291e-01	ci left: 1.795699e-02	ci right 2.037929e-02	k: 957	n:50000
BCKDK   50000 perm   10 sec   (4773 perm/sec)   p_kst 1.914000e-02   p_cons 3.894000e-01   p_joint 3.644000e-02

Joint ci ratio: 8.517183e-02	ci left: 3.264575e-02	ci right 3.556621e-02	k: 2045	n:60000
Cons ci ratio: 1.998296e-02	ci left: 3.868263e-01	ci right 3.946509e-01	k: 23444	n:60000
KS ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
BCKDK   60000 perm   13 sec   (4656 perm/sec)   p_kst 1.940000e-02   p_cons 3.907333e-01   p_joint 3.408333e-02

Joint ci ratio: 4.340844e-02	ci left: 1.020733e-01	ci right 1.066167e-01	k: 7303	n:70000
Cons ci ratio: 1.850589e-02	ci left: 3.869832e-01	ci right 3.942259e-01	k: 27342	n:70000
KS ci ratio: 1.043611e-01	ci left: 1.872510e-02	ci right 2.080070e-02	k: 1382	n:70000
BCKDK   70000 perm   15 sec   (4553 perm/sec)   p_kst 1.974286e-02   p_cons 3.906000e-01   p_joint 1.043286e-01

Joint ci ratio: 4.073971e-02	ci left: 1.016079e-01	ci right 1.058459e-01	k: 8297	n:80000
Cons ci ratio: 1.732757e-02	ci left: 3.867552e-01	ci right 3.935278e-01	k: 31211	n:80000
KS ci ratio: 9.776533e-02	ci left: 1.873602e-02	ci right 2.067403e-02	k: 1575	n:80000
BCKDK   80000 perm   18 sec   (4459 perm/sec)   p_kst 1.968750e-02   p_cons 3.901375e-01   p_joint 1.037125e-01

Outputting figure to mutsig2_images.part000000000015/BCKDK.2_1287_80000_0.019688_0.39014_0.10371.png
                gene_name: BCKDK
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 98 percent done.
BCL2L11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
BCL2L11   10000 perm   1 sec   (6714 perm/sec)   p_kst 9.281000e-01   p_cons 5.237000e-01   p_joint 9.582000e-01

Outputting figure to mutsig2_images.part000000000015/BCL2L11.2_738_10000_0.9281_0.5237_0.9582.png
                gene_name: BCL2L11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000015
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 15 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 4421739: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000016> was used as the working directory.
Started at Wed Oct 24 17:31:14 2012
Results reported at Wed Oct 24 18:06:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000016.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000016.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 16  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000016.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2174.13 sec.
    Max Memory :      5340 MB
    Max Swap   :      7655 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
16
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 16
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 16: processing genes 1358 - 1448
Calculating significance of each gene.
Using projection method.
1358	BCL2L14	1
1359	BCL2L15	6.723538e-01
1360	BCL2L2	1
1361	BCL3	1
1362	BCL6	9.437212e-01
1363	BCL6B	6.755008e-01
1364	BCL7A	1
1365	BCL7B	3.525117e-01
1366	BCL7C	1.709367e-01
1367	BCL9	9.998583e-01
1368	BCL9L	8.721293e-01
1369	BCLAF1	5.003143e-03
In gene BCMO1 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1688    n = 1	mu =   7.03e-07
1370	BCMO1	8.119318e-01
1371	BCO2	1.317062e-01
1372	BCOR	8.568275e-01
1373	BCORL1	9.997576e-01
1374	BCR	9.652250e-01
1375	BCS1L	8.881273e-01
1376	BDH1	1
1377	BDH2	6.877338e-01
1378	BDKRB1	7.652573e-01
1379	BDKRB2	1
1380	BDNF	8.803873e-01
1381	BDP1	6.714285e-01
1382	BECN1	8.444552e-01
1383	BEGAIN	4.209596e-01
1384	BEND2	4.174580e-01
1385	BEND3	1
1386	BEND4	9.591587e-02
1387	BEND5	8.363111e-01
1388	BEND6	2.100166e-01
1389	BEND7	8.891703e-01
1390	BEST1	1
1391	BEST2	1
1392	BEST3	9.348602e-01
1393	BEST4	6.912053e-01
1394	BET1	1
1395	BET1L	1
1396	BEX1	3.514536e-02
1397	BEX2	1.964077e-01
1398	BEX4	1
1399	BEX5	1
1400	BFAR	8.471394e-01
1401	BFSP1	9.427025e-01
1402	BFSP2	6.440518e-01
1403	BGLAP	1.101862e-01
1404	BGN	4.136897e-01
1405	BHLHB9	1.913806e-01
1406	BHLHE22	1
1407	BHLHE23	1
1408	BHLHE40	5.956211e-01
1409	BHLHE41	1
1410	BHMT	3.295103e-02
1411	BHMT2	7.598763e-01
1412	BICC1	3.224286e-01
1413	BICD1	1
1414	BICD2	9.804190e-01
1415	BID	7.918659e-01
1416	BIK	1
1417	BIN1	1
1418	BIN2	5.009121e-02
1419	BIN3	1
1420	BIRC2	8.748260e-01
1421	BIRC3	8.253728e-01
1422	BIRC5	7.163722e-01
1423	BIRC6	8.326888e-01
1424	BIRC7	7.501394e-01
1425	BIRC8	1.507197e-04
1426	BIVM	1
1427	BLCAP	1
1428	BLID	6.561324e-03
1429	BLK	9.479832e-01
1430	BLM	8.026924e-01
1431	BLMH	1.538507e-01
1432	BLNK	8.870566e-01
1433	BLOC1S1	1
1434	BLOC1S2	1.175763e-01
1435	BLOC1S3	1
1436	BLVRA	7.850121e-01
1437	BLVRB	6.501409e-01
1438	BLZF1	1
1439	BMF	1
1440	BMI1	5.863620e-01
1441	BMP1	9.440529e-01
1442	BMP10	1
1443	BMP15	4.282498e-03
1444	BMP2	8.273542e-01
1445	BMP2K	3.361695e-01
1446	BMP3	4.923189e-01
1447	BMP4	2.670311e-01
1448	BMP5	5.688105e-01
Done

Running MutSig 2:
Scatter job 16: processing genes 1358 - 1448
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BIRC6
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.525856e-02	ci left: 2.053056e-01	ci right 2.214617e-01	k: 2133	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
BIRC6   10000 perm   4 sec   (2484 perm/sec)   p_kst 6.280000e-01   p_cons 3.960000e-02   p_joint 2.133000e-01

Joint ci ratio: 5.466036e-02	ci left: 1.989284e-01	ci right 2.101576e-01	k: 4090	n:20000
Cons ci ratio: 1.363231e-01	ci left: 3.698772e-02	ci right 4.244714e-02	k: 793	n:20000
KS ci ratio: 2.148114e-02	ci left: 6.179969e-01	ci right 6.314668e-01	k: 12495	n:20000
BIRC6   20000 perm   10 sec   (1905 perm/sec)   p_kst 6.247500e-01   p_cons 3.965000e-02   p_joint 2.045000e-01

Joint ci ratio: 4.566379e-02	ci left: 1.926774e-01	ci right 2.017147e-01	k: 5915	n:30000
Cons ci ratio: 1.122438e-01	ci left: 3.686981e-02	ci right 4.128669e-02	k: 1171	n:30000
KS ci ratio: 1.744928e-02	ci left: 6.216660e-01	ci right 6.326427e-01	k: 18815	n:30000
BIRC6   30000 perm   15 sec   (1989 perm/sec)   p_kst 6.271667e-01   p_cons 3.903333e-02   p_joint 1.971667e-01

Joint ci ratio: 4.379770e-02	ci left: 1.631832e-01	ci right 1.705152e-01	k: 6673	n:40000
Cons ci ratio: 9.804732e-02	ci left: 3.653794e-02	ci right 4.032944e-02	k: 1536	n:40000
KS ci ratio: 1.509441e-02	ci left: 6.229410e-01	ci right 6.324405e-01	k: 25108	n:40000
BIRC6   40000 perm   20 sec   (2035 perm/sec)   p_kst 6.277000e-01   p_cons 3.840000e-02   p_joint 1.668250e-01

Outputting figure to mutsig2_images.part000000000016/BIRC6.33_14870_40000_0.6277_0.0384_0.16683.png
                gene_name: BIRC6
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 2 percent done.
BCLAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
Cons ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
KS ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
BCLAF1   10000 perm   2 sec   (4643 perm/sec)   p_kst 8.579000e-01   p_cons 4.371000e-01   p_joint 8.498000e-01

Outputting figure to mutsig2_images.part000000000016/BCLAF1.26_2807_10000_0.8579_0.4371_0.8498.png
                gene_name: BCLAF1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 4 percent done.
BDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
BDP1   10000 perm   3 sec   (3512 perm/sec)   p_kst 1.797000e-01   p_cons 9.300000e-02   p_joint 9.290000e-02

Joint ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
Cons ci ratio: 8.101066e-02	ci left: 1.005386e-01	ci right 1.090767e-01	k: 2095	n:20000
KS ci ratio: 5.920113e-02	ci left: 1.744503e-01	ci right 1.851430e-01	k: 3595	n:20000
BDP1   20000 perm   6 sec   (3236 perm/sec)   p_kst 1.797500e-01   p_cons 1.047500e-01   p_joint 6.720000e-02

Joint ci ratio: 9.339243e-02	ci left: 5.287047e-02	ci right 5.808270e-02	k: 1663	n:30000
Cons ci ratio: 6.940939e-02	ci left: 9.275464e-02	ci right 9.945715e-02	k: 2882	n:30000
KS ci ratio: 4.841985e-02	ci left: 1.749407e-01	ci right 1.836548e-01	k: 5378	n:30000
BDP1   30000 perm   10 sec   (3135 perm/sec)   p_kst 1.792667e-01   p_cons 9.606667e-02   p_joint 5.543333e-02

Outputting figure to mutsig2_images.part000000000016/BDP1.16_8031_30000_0.17927_0.096067_0.055433.png
                gene_name: BDP1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 6 percent done.
BCORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
Cons ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
KS ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
BCORL1   10000 perm   2 sec   (4004 perm/sec)   p_kst 3.450000e-02   p_cons 7.807000e-01   p_joint 6.750000e-02

Joint ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
Cons ci ratio: 1.408221e-02	ci left: 7.891859e-01	ci right 8.004283e-01	k: 15897	n:20000
KS ci ratio: 1.495754e-01	ci left: 3.071190e-02	ci right 3.572501e-02	k: 663	n:20000
BCORL1   20000 perm   5 sec   (3679 perm/sec)   p_kst 3.315000e-02   p_cons 7.948500e-01   p_joint 7.925000e-02

Joint ci ratio: 8.178232e-02	ci left: 6.821689e-02	ci right 7.406650e-02	k: 2133	n:30000
Cons ci ratio: 1.148568e-02	ci left: 7.905883e-01	ci right 7.997545e-01	k: 23856	n:30000
KS ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
BCORL1   30000 perm   8 sec   (3550 perm/sec)   p_kst 3.260000e-02   p_cons 7.952000e-01   p_joint 7.110000e-02

Joint ci ratio: 6.958739e-02	ci left: 7.093661e-02	ci right 7.607551e-02	k: 2939	n:40000
Cons ci ratio: 9.964421e-03	ci left: 7.906323e-01	ci right 7.985749e-01	k: 31785	n:40000
KS ci ratio: 1.051543e-01	ci left: 3.180680e-02	ci right 3.536134e-02	k: 1342	n:40000
BCORL1   40000 perm   12 sec   (3467 perm/sec)   p_kst 3.355000e-02   p_cons 7.946250e-01   p_joint 7.347500e-02

Joint ci ratio: 5.726002e-02	ci left: 8.324080e-02	ci right 8.816743e-02	k: 4284	n:50000
Cons ci ratio: 8.896733e-03	ci left: 7.916357e-01	ci right 7.987300e-01	k: 39760	n:50000
KS ci ratio: 9.369993e-02	ci left: 3.223311e-02	ci right 3.542131e-02	k: 1690	n:50000
BCORL1   50000 perm   15 sec   (3397 perm/sec)   p_kst 3.380000e-02   p_cons 7.952000e-01   p_joint 8.568000e-02

Outputting figure to mutsig2_images.part000000000016/BCORL1.13_5410_50000_0.0338_0.7952_0.08568.png
                gene_name: BCORL1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 8 percent done.
BEND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
Cons ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
KS ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
BEND2   10000 perm   2 sec   (4876 perm/sec)   p_kst 6.017000e-01   p_cons 8.237000e-01   p_joint 7.500000e-01

Outputting figure to mutsig2_images.part000000000016/BEND2.12_2482_10000_0.6017_0.8237_0.75.png
                gene_name: BEND2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 10 percent done.
BICC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
Cons ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
KS ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
BICC1   10000 perm   2 sec   (5397 perm/sec)   p_kst 7.375000e-01   p_cons 8.650000e-02   p_joint 2.672000e-01

Joint ci ratio: 4.181732e-02	ci left: 2.988217e-01	ci right 3.116350e-01	k: 6104	n:20000
Cons ci ratio: 8.832658e-02	ci left: 8.567661e-02	ci right 9.364316e-02	k: 1792	n:20000
KS ci ratio: 1.690419e-02	ci left: 7.226813e-01	ci right 7.350521e-01	k: 14578	n:20000
BICC1   20000 perm   4 sec   (4805 perm/sec)   p_kst 7.289000e-01   p_cons 8.960000e-02   p_joint 3.052000e-01

Outputting figure to mutsig2_images.part000000000016/BICC1.11_3009_20000_0.7289_0.0896_0.3052.png
                gene_name: BICC1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 12 percent done.
BCL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
Cons ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
BCL9   10000 perm   2 sec   (4733 perm/sec)   p_kst 3.550000e-01   p_cons 1.738000e-01   p_joint 2.885000e-01

Outputting figure to mutsig2_images.part000000000016/BCL9.9_4309_10000_0.355_0.1738_0.2885.png
                gene_name: BCL9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 15 percent done.
BCOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
Cons ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
KS ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
BCOR   10000 perm   2 sec   (4115 perm/sec)   p_kst 7.015000e-01   p_cons 1.446000e-01   p_joint 3.384000e-01

Outputting figure to mutsig2_images.part000000000016/BCOR.9_5324_10000_0.7015_0.1446_0.3384.png
                gene_name: BCOR
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
BIN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
Cons ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
KS ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
BIN2   10000 perm   2 sec   (5339 perm/sec)   p_kst 2.965000e-01   p_cons 2.657000e-01   p_joint 3.598000e-01

Outputting figure to mutsig2_images.part000000000016/BIN2.7_1750_10000_0.2965_0.2657_0.3598.png
                gene_name: BIN2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 19 percent done.
BCL9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
Cons ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
KS ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
BCL9L   10000 perm   2 sec   (4363 perm/sec)   p_kst 2.205000e-01   p_cons 9.879000e-01   p_joint 3.809000e-01

Outputting figure to mutsig2_images.part000000000016/BCL9L.7_4532_10000_0.2205_0.9879_0.3809.png
                gene_name: BCL9L
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
BCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
BCO2   10000 perm   2 sec   (5673 perm/sec)   p_kst 4.269000e-01   p_cons 3.639000e-01   p_joint 4.044000e-01

Outputting figure to mutsig2_images.part000000000016/BCO2.7_1788_10000_0.4269_0.3639_0.4044.png
                gene_name: BCO2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 23 percent done.
BIRC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
Cons ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
KS ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
BIRC8   10000 perm   2 sec   (5520 perm/sec)   p_kst 9.508000e-01   p_cons 3.634000e-01   p_joint 7.047000e-01

Outputting figure to mutsig2_images.part000000000016/BIRC8.7_715_10000_0.9508_0.3634_0.7047.png
                gene_name: BIRC8
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
BMP2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
Cons ci ratio: 1.300507e-03	ci left: 9.981617e-01	ci right 9.995204e-01	k: 9990	n:10000
KS ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
BMP2K   10000 perm   2 sec   (4597 perm/sec)   p_kst 5.608000e-01   p_cons 9.990000e-01   p_joint 8.660000e-01

Outputting figure to mutsig2_images.part000000000016/BMP2K.7_3588_10000_0.5608_0.999_0.866.png
                gene_name: BMP2K
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 27 percent done.
BGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
Cons ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
KS ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
BGN   10000 perm   2 sec   (5514 perm/sec)   p_kst 3.452000e-01   p_cons 5.892000e-01   p_joint 5.163000e-01

Outputting figure to mutsig2_images.part000000000016/BGN.6_1135_10000_0.3452_0.5892_0.5163.png
                gene_name: BGN
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 29 percent done.
BHMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
KS ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
BHMT   10000 perm   2 sec   (5391 perm/sec)   p_kst 5.476000e-01   p_cons 9.000000e-04   p_joint 1.250000e-02

Joint ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
Cons ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
KS ci ratio: 2.552737e-02	ci left: 5.341133e-01	ci right 5.479747e-01	k: 10821	n:20000
BHMT   20000 perm   4 sec   (4892 perm/sec)   p_kst 5.410500e-01   p_cons 9.000000e-04   p_joint 3.545000e-02

Joint ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
Cons ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
KS ci ratio: 2.082739e-02	ci left: 5.357744e-01	ci right 5.470842e-01	k: 16243	n:30000
BHMT   30000 perm   6 sec   (4686 perm/sec)   p_kst 5.414333e-01   p_cons 8.666667e-04   p_joint 1.340000e-02

Joint ci ratio: 1.205584e-01	ci left: 2.419556e-02	ci right 2.732381e-02	k: 1029	n:40000
Cons ci ratio: 6.273885e-01	ci left: 6.723615e-04	ci right 1.303718e-03	k: 38	n:40000
KS ci ratio: 1.806118e-02	ci left: 5.358761e-01	ci right 5.456680e-01	k: 21631	n:40000
BHMT   40000 perm   9 sec   (4539 perm/sec)   p_kst 5.407750e-01   p_cons 9.500000e-04   p_joint 2.572500e-02

Joint ci ratio: 1.532293e-01	ci left: 1.192926e-02	ci right 1.392788e-02	k: 645	n:50000
Cons ci ratio: 5.777008e-01	ci left: 6.565396e-04	ci right 1.204088e-03	k: 45	n:50000
KS ci ratio: 1.562429e-02	ci left: 5.529330e-01	ci right 5.616603e-01	k: 27865	n:50000
BHMT   50000 perm   11 sec   (4432 perm/sec)   p_kst 5.573000e-01   p_cons 9.000000e-04   p_joint 1.290000e-02

Joint ci ratio: 1.445001e-01	ci left: 1.124050e-02	ci right 1.300716e-02	k: 726	n:60000
Cons ci ratio: 5.331999e-01	ci left: 6.617451e-04	ci right 1.155265e-03	k: 53	n:60000
KS ci ratio: 1.423895e-02	ci left: 5.541486e-01	ci right 5.621124e-01	k: 33488	n:60000
BHMT   60000 perm   14 sec   (4327 perm/sec)   p_kst 5.581333e-01   p_cons 8.833333e-04   p_joint 1.210000e-02

Joint ci ratio: 1.179144e-01	ci left: 1.462561e-02	ci right 1.647200e-02	k: 1087	n:70000
Cons ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
KS ci ratio: 1.319548e-02	ci left: 5.539684e-01	ci right 5.613411e-01	k: 39036	n:70000
BHMT   70000 perm   16 sec   (4244 perm/sec)   p_kst 5.576571e-01   p_cons 9.142857e-04   p_joint 1.552857e-02

Joint ci ratio: 1.503544e-01	ci left: 7.791233e-03	ci right 9.069800e-03	k: 673	n:80000
Cons ci ratio: 4.617656e-01	ci left: 6.932079e-04	ci right 1.119331e-03	k: 71	n:80000
KS ci ratio: 1.294303e-02	ci left: 5.306734e-01	ci right 5.375991e-01	k: 42731	n:80000
BHMT   80000 perm   19 sec   (4162 perm/sec)   p_kst 5.341375e-01   p_cons 8.875000e-04   p_joint 8.412500e-03

Joint ci ratio: 1.407528e-01	ci left: 7.942728e-03	ci right 9.155934e-03	k: 768	n:90000
Cons ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
KS ci ratio: 1.220566e-02	ci left: 5.307566e-01	ci right 5.372857e-01	k: 48062	n:90000
BHMT   90000 perm   22 sec   (4093 perm/sec)   p_kst 5.340222e-01   p_cons 9.444444e-04   p_joint 8.533333e-03

Joint ci ratio: 1.349261e-01	ci left: 7.804972e-03	ci right 8.943819e-03	k: 836	n:100000
Cons ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
KS ci ratio: 1.157542e-02	ci left: 5.310923e-01	ci right 5.372857e-01	k: 53419	n:100000
BHMT   100000 perm   25 sec   (4024 perm/sec)   p_kst 5.341900e-01   p_cons 9.500000e-04   p_joint 8.360000e-03

Joint ci ratio: 1.310884e-01	ci left: 7.534781e-03	ci right 8.600492e-03	k: 886	n:110000
Cons ci ratio: 3.879561e-01	ci left: 7.479345e-04	ci right 1.115564e-03	k: 101	n:110000
KS ci ratio: 1.105326e-02	ci left: 5.304919e-01	ci right 5.363972e-01	k: 58679	n:110000
BHMT   110000 perm   28 sec   (3959 perm/sec)   p_kst 5.334455e-01   p_cons 9.181818e-04   p_joint 8.054545e-03

Joint ci ratio: 1.002748e-01	ci left: 1.194404e-02	ci right 1.321301e-02	k: 1508	n:120000
Cons ci ratio: 3.685874e-01	ci left: 7.685639e-04	ci right 1.122936e-03	k: 112	n:120000
KS ci ratio: 1.058119e-02	ci left: 5.306891e-01	ci right 5.363426e-01	k: 64022	n:120000
BHMT   120000 perm   31 sec   (3894 perm/sec)   p_kst 5.335167e-01   p_cons 9.333333e-04   p_joint 1.256667e-02

Joint ci ratio: 8.271134e-02	ci left: 1.628162e-02	ci right 1.769389e-02	k: 2207	n:130000
Cons ci ratio: 3.518571e-01	ci left: 7.864062e-04	ci right 1.128792e-03	k: 123	n:130000
KS ci ratio: 1.015073e-02	ci left: 5.315531e-01	ci right 5.369839e-01	k: 69455	n:130000
BHMT   130000 perm   34 sec   (3833 perm/sec)   p_kst 5.342692e-01   p_cons 9.461538e-04   p_joint 1.697692e-02

Joint ci ratio: 8.264837e-02	ci left: 1.516026e-02	ci right 1.647419e-02	k: 2213	n:140000
Cons ci ratio: 3.423305e-01	ci left: 7.758755e-04	ci right 1.102507e-03	k: 130	n:140000
KS ci ratio: 9.786647e-03	ci left: 5.313898e-01	ci right 5.366230e-01	k: 74761	n:140000
BHMT   140000 perm   37 sec   (3774 perm/sec)   p_kst 5.340071e-01   p_cons 9.285714e-04   p_joint 1.580714e-02

Joint ci ratio: 8.073481e-02	ci left: 1.484824e-02	ci right 1.610393e-02	k: 2320	n:150000
Cons ci ratio: 3.359837e-01	ci left: 7.546437e-04	ci right 1.065171e-03	k: 135	n:150000
KS ci ratio: 9.455068e-03	ci left: 5.314649e-01	ci right 5.365204e-01	k: 80099	n:150000
BHMT   150000 perm   40 sec   (3726 perm/sec)   p_kst 5.339933e-01   p_cons 9.000000e-04   p_joint 1.546667e-02

Joint ci ratio: 7.460447e-02	ci left: 1.632927e-02	ci right 1.760082e-02	k: 2713	n:160000
Cons ci ratio: 3.265186e-01	ci left: 7.533210e-04	ci right 1.052741e-03	k: 143	n:160000
KS ci ratio: 9.142878e-03	ci left: 5.321959e-01	ci right 5.370903e-01	k: 85543	n:160000
BHMT   160000 perm   44 sec   (3677 perm/sec)   p_kst 5.346437e-01   p_cons 8.937500e-04   p_joint 1.695625e-02

Joint ci ratio: 7.492338e-02	ci left: 1.525296e-02	ci right 1.644598e-02	k: 2693	n:170000
Cons ci ratio: 3.178109e-01	ci left: 7.522621e-04	ci right 1.041666e-03	k: 151	n:170000
KS ci ratio: 8.876552e-03	ci left: 5.318959e-01	ci right 5.366441e-01	k: 90826	n:170000
BHMT   170000 perm   47 sec   (3630 perm/sec)   p_kst 5.342706e-01   p_cons 8.882353e-04   p_joint 1.584118e-02

Joint ci ratio: 7.071868e-02	ci left: 1.618945e-02	ci right 1.738174e-02	k: 3020	n:180000
Cons ci ratio: 3.097646e-01	ci left: 7.514149e-04	ci right 1.031729e-03	k: 159	n:180000
KS ci ratio: 8.624412e-03	ci left: 5.320812e-01	ci right 5.366955e-01	k: 96190	n:180000
BHMT   180000 perm   50 sec   (3583 perm/sec)   p_kst 5.343889e-01   p_cons 8.833333e-04   p_joint 1.677778e-02

Joint ci ratio: 7.070290e-02	ci left: 1.535782e-02	ci right 1.648860e-02	k: 3024	n:190000
Cons ci ratio: 3.041173e-01	ci left: 7.410133e-04	ci right 1.011432e-03	k: 165	n:190000
KS ci ratio: 8.395623e-03	ci left: 5.320697e-01	ci right 5.365608e-01	k: 101520	n:190000
BHMT   190000 perm   54 sec   (3537 perm/sec)   p_kst 5.343158e-01   p_cons 8.684211e-04   p_joint 1.591579e-02

Joint ci ratio: 7.155251e-02	ci left: 1.425569e-02	ci right 1.531845e-02	k: 2956	n:200000
Cons ci ratio: 2.996410e-01	ci left: 7.270685e-04	ci right 9.877493e-04	k: 170	n:200000
KS ci ratio: 8.030453e-03	ci left: 5.414839e-01	ci right 5.458548e-01	k: 108734	n:200000
BHMT   200000 perm   57 sec   (3492 perm/sec)   p_kst 5.436700e-01   p_cons 8.500000e-04   p_joint 1.478000e-02

Joint ci ratio: 6.836605e-02	ci left: 1.488702e-02	ci right 1.594546e-02	k: 3236	n:210000
Cons ci ratio: 2.920536e-01	ci left: 7.321236e-04	ci right 9.867415e-04	k: 179	n:210000
KS ci ratio: 7.840284e-03	ci left: 5.413238e-01	ci right 5.455893e-01	k: 114126	n:210000
BHMT   210000 perm   61 sec   (3448 perm/sec)   p_kst 5.434571e-01   p_cons 8.523810e-04   p_joint 1.540952e-02

Joint ci ratio: 6.474161e-02	ci left: 1.585996e-02	ci right 1.692556e-02	k: 3605	n:220000
Cons ci ratio: 2.850149e-01	ci left: 7.367947e-04	ci right 9.857505e-04	k: 188	n:220000
KS ci ratio: 7.660768e-03	ci left: 5.413248e-01	ci right 5.454922e-01	k: 119550	n:220000
BHMT   220000 perm   65 sec   (3404 perm/sec)   p_kst 5.434091e-01   p_cons 8.545455e-04   p_joint 1.638636e-02

Joint ci ratio: 6.361868e-02	ci left: 1.572223e-02	ci right 1.675958e-02	k: 3734	n:230000
Cons ci ratio: 2.784617e-01	ci left: 7.411266e-04	ci right 9.847791e-04	k: 197	n:230000
KS ci ratio: 7.485365e-03	ci left: 5.418357e-01	ci right 5.459110e-01	k: 125091	n:230000
BHMT   230000 perm   68 sec   (3361 perm/sec)   p_kst 5.438739e-01   p_cons 8.565217e-04   p_joint 1.623478e-02

Joint ci ratio: 6.041062e-02	ci left: 1.672053e-02	ci right 1.776617e-02	k: 4137	n:240000
Cons ci ratio: 2.716847e-01	ci left: 7.490401e-04	ci right 9.882791e-04	k: 207	n:240000
KS ci ratio: 7.329285e-03	ci left: 5.417755e-01	ci right 5.457651e-01	k: 130505	n:240000
BHMT   240000 perm   72 sec   (3320 perm/sec)   p_kst 5.437708e-01   p_cons 8.625000e-04   p_joint 1.723750e-02

Joint ci ratio: 5.955253e-02	ci left: 1.652840e-02	ci right 1.754684e-02	k: 4258	n:250000
Cons ci ratio: 2.623850e-01	ci left: 7.750645e-04	ci right 1.012752e-03	k: 222	n:250000
KS ci ratio: 7.177773e-03	ci left: 5.420531e-01	ci right 5.459618e-01	k: 136002	n:250000
BHMT   250000 perm   76 sec   (3284 perm/sec)   p_kst 5.440080e-01   p_cons 8.880000e-04   p_joint 1.703200e-02

Joint ci ratio: 5.565520e-02	ci left: 1.820172e-02	ci right 1.924751e-02	k: 4867	n:260000
Cons ci ratio: 2.572453e-01	ci left: 7.776158e-04	ci right 1.010665e-03	k: 231	n:260000
KS ci ratio: 7.032064e-03	ci left: 5.425371e-01	ci right 5.463696e-01	k: 141558	n:260000
BHMT   260000 perm   80 sec   (3248 perm/sec)   p_kst 5.444538e-01   p_cons 8.884615e-04   p_joint 1.871923e-02

Joint ci ratio: 5.427246e-02	ci left: 1.844084e-02	ci right 1.947322e-02	k: 5117	n:270000
Cons ci ratio: 2.513545e-01	ci left: 7.869602e-04	ci right 1.016564e-03	k: 242	n:270000
KS ci ratio: 6.898117e-03	ci left: 5.427526e-01	ci right 5.465131e-01	k: 147051	n:270000
BHMT   270000 perm   84 sec   (3212 perm/sec)   p_kst 5.446333e-01   p_cons 8.962963e-04   p_joint 1.895185e-02

Joint ci ratio: 5.318000e-02	ci left: 1.852924e-02	ci right 1.954504e-02	k: 5329	n:280000
Cons ci ratio: 2.483090e-01	ci left: 7.789411e-04	ci right 1.003026e-03	k: 248	n:280000
KS ci ratio: 6.768373e-03	ci left: 5.431854e-01	ci right 5.468779e-01	k: 152609	n:280000
BHMT   280000 perm   88 sec   (3174 perm/sec)   p_kst 5.450321e-01   p_cons 8.857143e-04   p_joint 1.903214e-02

Joint ci ratio: 5.248502e-02	ci left: 1.837685e-02	ci right 1.937073e-02	k: 5472	n:290000
Cons ci ratio: 2.463403e-01	ci left: 7.650186e-04	ci right 9.830860e-04	k: 252	n:290000
KS ci ratio: 6.650854e-03	ci left: 5.432027e-01	ci right 5.468309e-01	k: 158055	n:290000
BHMT   290000 perm   92 sec   (3137 perm/sec)   p_kst 5.450172e-01   p_cons 8.689655e-04   p_joint 1.886897e-02

Joint ci ratio: 4.984876e-02	ci left: 1.969297e-02	ci right 2.070300e-02	k: 6058	n:300000
Cons ci ratio: 2.406969e-01	ci left: 7.770781e-04	ci right 9.927515e-04	k: 264	n:300000
KS ci ratio: 6.535780e-03	ci left: 5.434827e-01	ci right 5.470497e-01	k: 163580	n:300000
BHMT   300000 perm   97 sec   (3101 perm/sec)   p_kst 5.452667e-01   p_cons 8.800000e-04   p_joint 2.019333e-02

Joint ci ratio: 4.720464e-02	ci left: 2.124735e-02	ci right 2.227774e-02	k: 6745	n:310000
Cons ci ratio: 2.358508e-01	ci left: 7.853772e-04	ci right 9.983249e-04	k: 275	n:310000
KS ci ratio: 6.433252e-03	ci left: 5.432224e-01	ci right 5.467316e-01	k: 168943	n:310000
BHMT   310000 perm   101 sec   (3064 perm/sec)   p_kst 5.449774e-01   p_cons 8.870968e-04   p_joint 2.175806e-02

Joint ci ratio: 4.700088e-02	ci left: 2.077472e-02	ci right 2.177772e-02	k: 6807	n:320000
Cons ci ratio: 2.325056e-01	ci left: 7.843675e-04	ci right 9.935914e-04	k: 283	n:320000
KS ci ratio: 6.328656e-03	ci left: 5.435071e-01	ci right 5.469608e-01	k: 174475	n:320000
BHMT   320000 perm   106 sec   (3028 perm/sec)   p_kst 5.452344e-01   p_cons 8.843750e-04   p_joint 2.127187e-02

Joint ci ratio: 4.743423e-02	ci left: 1.979459e-02	ci right 2.075932e-02	k: 6690	n:330000
Cons ci ratio: 2.273587e-01	ci left: 7.977245e-04	ci right 1.005141e-03	k: 296	n:330000
KS ci ratio: 6.235776e-03	ci left: 5.432354e-01	ci right 5.466365e-01	k: 179829	n:330000
BHMT   330000 perm   110 sec   (2994 perm/sec)   p_kst 5.449364e-01   p_cons 8.969697e-04   p_joint 2.027273e-02

Joint ci ratio: 4.698165e-02	ci left: 1.959309e-02	ci right 2.053864e-02	k: 6821	n:340000
Cons ci ratio: 2.247266e-01	ci left: 7.936843e-04	ci right 9.973300e-04	k: 303	n:340000
KS ci ratio: 6.147157e-03	ci left: 5.429566e-01	ci right 5.463074e-01	k: 185175	n:340000
BHMT   340000 perm   115 sec   (2960 perm/sec)   p_kst 5.446324e-01   p_cons 8.911765e-04   p_joint 2.006176e-02

Joint ci ratio: 4.369343e-02	ci left: 2.198860e-02	ci right 2.297362e-02	k: 7867	n:350000
Cons ci ratio: 2.218270e-01	ci left: 7.925865e-04	ci right 9.929683e-04	k: 311	n:350000
KS ci ratio: 6.059937e-03	ci left: 5.428797e-01	ci right 5.461824e-01	k: 190586	n:350000
BHMT   350000 perm   120 sec   (2926 perm/sec)   p_kst 5.445314e-01   p_cons 8.885714e-04   p_joint 2.247714e-02

Joint ci ratio: 4.135294e-02	ci left: 2.384895e-02	ci right 2.485873e-02	k: 8766	n:360000
Cons ci ratio: 2.190369e-01	ci left: 7.915655e-04	ci right 9.888332e-04	k: 319	n:360000
KS ci ratio: 5.973584e-03	ci left: 5.430354e-01	ci right 5.462917e-01	k: 196079	n:360000
BHMT   360000 perm   125 sec   (2889 perm/sec)   p_kst 5.446639e-01   p_cons 8.861111e-04   p_joint 2.435000e-02

Joint ci ratio: 4.089164e-02	ci left: 2.373934e-02	ci right 2.473300e-02	k: 8966	n:370000
Cons ci ratio: 2.156924e-01	ci left: 7.957277e-04	ci right 9.906038e-04	k: 329	n:370000
KS ci ratio: 5.891686e-03	ci left: 5.431099e-01	ci right 5.463218e-01	k: 201545	n:370000
BHMT   370000 perm   129 sec   (2859 perm/sec)   p_kst 5.447162e-01   p_cons 8.891892e-04   p_joint 2.423243e-02

Joint ci ratio: 4.136078e-02	ci left: 2.261428e-02	ci right 2.357196e-02	k: 8774	n:380000
Cons ci ratio: 2.140778e-01	ci left: 7.872369e-04	ci right 9.784008e-04	k: 334	n:380000
KS ci ratio: 5.815658e-03	ci left: 5.429597e-01	ci right 5.461291e-01	k: 206927	n:380000
BHMT   380000 perm   134 sec   (2828 perm/sec)   p_kst 5.445447e-01   p_cons 8.789474e-04   p_joint 2.308947e-02

Joint ci ratio: 4.218452e-02	ci left: 2.120439e-02	ci right 2.212068e-02	k: 8447	n:390000
Cons ci ratio: 2.124989e-01	ci left: 7.791867e-04	ci right 9.668184e-04	k: 339	n:390000
KS ci ratio: 5.739263e-03	ci left: 5.430970e-01	ci right 5.462254e-01	k: 212418	n:390000
BHMT   390000 perm   139 sec   (2798 perm/sec)   p_kst 5.446615e-01   p_cons 8.692308e-04   p_joint 2.165897e-02

Joint ci ratio: 4.372785e-02	ci left: 1.926416e-02	ci right 2.012782e-02	k: 7877	n:400000
Cons ci ratio: 2.103451e-01	ci left: 7.762804e-04	ci right 9.610733e-04	k: 346	n:400000
KS ci ratio: 5.666143e-03	ci left: 5.431977e-01	ci right 5.462867e-01	k: 217897	n:400000
BHMT   400000 perm   144 sec   (2768 perm/sec)   p_kst 5.447425e-01   p_cons 8.650000e-04   p_joint 1.969250e-02

Joint ci ratio: 4.354454e-02	ci left: 1.896069e-02	ci right 1.980710e-02	k: 7946	n:410000
Cons ci ratio: 2.088467e-01	ci left: 7.689014e-04	ci right 9.504673e-04	k: 351	n:410000
KS ci ratio: 5.598226e-03	ci left: 5.430741e-01	ci right 5.461253e-01	k: 223286	n:410000
BHMT   410000 perm   150 sec   (2740 perm/sec)   p_kst 5.446000e-01   p_cons 8.560976e-04   p_joint 1.938049e-02

Joint ci ratio: 4.319059e-02	ci left: 1.882009e-02	ci right 1.965322e-02	k: 8078	n:420000
Cons ci ratio: 2.059416e-01	ci left: 7.731675e-04	ci right 9.528812e-04	k: 361	n:420000
KS ci ratio: 5.531843e-03	ci left: 5.430328e-01	ci right 5.460475e-01	k: 228707	n:420000
BHMT   420000 perm   155 sec   (2713 perm/sec)   p_kst 5.445405e-01   p_cons 8.595238e-04   p_joint 1.923333e-02

Joint ci ratio: 4.255539e-02	ci left: 1.893920e-02	ci right 1.976497e-02	k: 8320	n:430000
Cons ci ratio: 2.037032e-01	ci left: 7.728373e-04	ci right 9.502787e-04	k: 369	n:430000
KS ci ratio: 5.464615e-03	ci left: 5.432799e-01	ci right 5.462591e-01	k: 234251	n:430000
BHMT   430000 perm   160 sec   (2685 perm/sec)   p_kst 5.447698e-01   p_cons 8.581395e-04   p_joint 1.934884e-02

Joint ci ratio: 4.212332e-02	ci left: 1.889552e-02	ci right 1.971082e-02	k: 8492	n:440000
Cons ci ratio: 1.994350e-01	ci left: 7.898020e-04	ci right 9.668769e-04	k: 385	n:440000
KS ci ratio: 5.402846e-03	ci left: 5.432339e-01	ci right 5.461791e-01	k: 239671	n:440000
BHMT   440000 perm   166 sec   (2658 perm/sec)   p_kst 5.447068e-01   p_cons 8.750000e-04   p_joint 1.930000e-02

Joint ci ratio: 4.166494e-02	ci left: 1.888902e-02	ci right 1.969496e-02	k: 8680	n:450000
Cons ci ratio: 1.974001e-01	ci left: 7.891454e-04	ci right 9.640507e-04	k: 393	n:450000
KS ci ratio: 5.342072e-03	ci left: 5.432880e-01	ci right 5.462003e-01	k: 245135	n:450000
BHMT   450000 perm   171 sec   (2631 perm/sec)   p_kst 5.447444e-01   p_cons 8.733333e-04   p_joint 1.928889e-02

Joint ci ratio: 4.139525e-02	ci left: 1.872576e-02	ci right 1.951944e-02	k: 8795	n:460000
Cons ci ratio: 1.959146e-01	ci left: 7.843911e-04	ci right 9.567782e-04	k: 399	n:460000
KS ci ratio: 5.283675e-03	ci left: 5.433052e-01	ci right 5.461856e-01	k: 250583	n:460000
BHMT   460000 perm   177 sec   (2603 perm/sec)   p_kst 5.447457e-01   p_cons 8.673913e-04   p_joint 1.911957e-02

Joint ci ratio: 4.017164e-02	ci left: 1.945839e-02	ci right 2.025818e-02	k: 9332	n:470000
Cons ci ratio: 1.939845e-01	ci left: 7.838925e-04	ci right 9.542723e-04	k: 407	n:470000
KS ci ratio: 5.226770e-03	ci left: 5.433579e-01	ci right 5.462075e-01	k: 256048	n:470000
BHMT   470000 perm   182 sec   (2577 perm/sec)   p_kst 5.447830e-01   p_cons 8.659574e-04   p_joint 1.985532e-02

Joint ci ratio: 4.022630e-02	ci left: 1.900961e-02	ci right 1.979204e-02	k: 9311	n:480000
Cons ci ratio: 1.930414e-01	ci left: 7.754906e-04	ci right 9.431287e-04	k: 411	n:480000
KS ci ratio: 5.170514e-03	ci left: 5.435191e-01	ci right 5.463387e-01	k: 261566	n:480000
BHMT   480000 perm   188 sec   (2552 perm/sec)   p_kst 5.449292e-01   p_cons 8.562500e-04   p_joint 1.939792e-02

Joint ci ratio: 4.026087e-02	ci left: 1.859734e-02	ci right 1.936347e-02	k: 9299	n:490000
Cons ci ratio: 1.902895e-01	ci left: 7.829793e-04	ci right 9.495443e-04	k: 423	n:490000
KS ci ratio: 5.116941e-03	ci left: 5.435861e-01	ci right 5.463767e-01	k: 267041	n:490000
BHMT   490000 perm   194 sec   (2526 perm/sec)   p_kst 5.449816e-01   p_cons 8.632653e-04   p_joint 1.897755e-02

Joint ci ratio: 3.989653e-02	ci left: 1.856396e-02	ci right 1.932163e-02	k: 9470	n:500000
Cons ci ratio: 1.880842e-01	ci left: 7.863726e-04	ci right 9.514993e-04	k: 433	n:500000
KS ci ratio: 5.065183e-03	ci left: 5.436325e-01	ci right 5.463950e-01	k: 272507	n:500000
BHMT   500000 perm   200 sec   (2501 perm/sec)   p_kst 5.450140e-01   p_cons 8.660000e-04   p_joint 1.894000e-02

Joint ci ratio: 4.034469e-02	ci left: 1.780771e-02	ci right 1.854288e-02	k: 9268	n:510000
Cons ci ratio: 1.870107e-01	ci left: 7.802970e-04	ci right 9.431065e-04	k: 438	n:510000
KS ci ratio: 5.016947e-03	ci left: 5.434811e-01	ci right 5.462165e-01	k: 277873	n:510000
BHMT   510000 perm   206 sec   (2476 perm/sec)   p_kst 5.448490e-01   p_cons 8.588235e-04   p_joint 1.817255e-02

Joint ci ratio: 3.999529e-02	ci left: 1.777556e-02	ci right 1.850290e-02	k: 9431	n:520000
Cons ci ratio: 1.849162e-01	ci left: 7.836269e-04	ci right 9.450947e-04	k: 448	n:520000
KS ci ratio: 4.967982e-03	ci left: 5.435434e-01	ci right 5.462523e-01	k: 283347	n:520000
BHMT   520000 perm   212 sec   (2453 perm/sec)   p_kst 5.448981e-01   p_cons 8.615385e-04   p_joint 1.813654e-02

Joint ci ratio: 4.031232e-02	ci left: 1.717483e-02	ci right 1.788329e-02	k: 9289	n:530000
Cons ci ratio: 1.815105e-01	ci left: 7.994466e-04	ci right 9.608068e-04	k: 465	n:530000
KS ci ratio: 4.919487e-03	ci left: 5.436978e-01	ci right 5.463810e-01	k: 288871	n:530000
BHMT   530000 perm   218 sec   (2432 perm/sec)   p_kst 5.450396e-01   p_cons 8.773585e-04   p_joint 1.752642e-02

Joint ci ratio: 4.041426e-02	ci left: 1.677788e-02	ci right 1.747175e-02	k: 9246	n:540000
Cons ci ratio: 1.799724e-01	ci left: 7.987866e-04	ci right 9.584985e-04	k: 473	n:540000
KS ci ratio: 4.875278e-03	ci left: 5.435521e-01	ci right 5.462104e-01	k: 294236	n:540000
BHMT   540000 perm   224 sec   (2410 perm/sec)   p_kst 5.448815e-01   p_cons 8.759259e-04   p_joint 1.712222e-02

Joint ci ratio: 4.028132e-02	ci left: 1.658619e-02	ci right 1.726982e-02	k: 9309	n:550000
Cons ci ratio: 1.786583e-01	ci left: 7.964191e-04	ci right 9.543693e-04	k: 480	n:550000
KS ci ratio: 4.828821e-03	ci left: 5.437628e-01	ci right 5.463967e-01	k: 299794	n:550000
BHMT   550000 perm   230 sec   (2389 perm/sec)   p_kst 5.450800e-01   p_cons 8.727273e-04   p_joint 1.692545e-02

Joint ci ratio: 3.925197e-02	ci left: 1.715464e-02	ci right 1.784322e-02	k: 9798	n:560000
Cons ci ratio: 1.768294e-01	ci left: 7.992602e-04	ci right 9.559776e-04	k: 490	n:560000
KS ci ratio: 4.783889e-03	ci left: 5.439429e-01	ci right 5.465531e-01	k: 305339	n:560000
BHMT   560000 perm   236 sec   (2368 perm/sec)   p_kst 5.452482e-01   p_cons 8.750000e-04   p_joint 1.749643e-02

Joint ci ratio: 3.887041e-02	ci left: 1.718897e-02	ci right 1.787208e-02	k: 9991	n:570000
Cons ci ratio: 1.741877e-01	ci left: 8.103983e-04	ci right 9.666762e-04	k: 505	n:570000
KS ci ratio: 4.741077e-03	ci left: 5.440238e-01	ci right 5.466109e-01	k: 310831	n:570000
BHMT   570000 perm   243 sec   (2348 perm/sec)   p_kst 5.453175e-01   p_cons 8.859649e-04   p_joint 1.752807e-02

Joint ci ratio: 3.874051e-02	ci left: 1.701039e-02	ci right 1.768410e-02	k: 10060	n:580000
Cons ci ratio: 1.733340e-01	ci left: 8.046714e-04	ci right 9.590049e-04	k: 510	n:580000
KS ci ratio: 4.700309e-03	ci left: 5.440054e-01	ci right 5.465701e-01	k: 316267	n:580000
BHMT   580000 perm   249 sec   (2327 perm/sec)   p_kst 5.452879e-01   p_cons 8.793103e-04   p_joint 1.734483e-02

Joint ci ratio: 3.854220e-02	ci left: 1.689831e-02	ci right 1.756407e-02	k: 10165	n:590000
Cons ci ratio: 1.719931e-01	ci left: 8.040063e-04	ci right 9.568953e-04	k: 518	n:590000
KS ci ratio: 4.659141e-03	ci left: 5.441402e-01	ci right 5.466830e-01	k: 321793	n:590000
BHMT   590000 perm   256 sec   (2305 perm/sec)   p_kst 5.454119e-01   p_cons 8.779661e-04   p_joint 1.722881e-02

Joint ci ratio: 3.822588e-02	ci left: 1.689563e-02	ci right 1.755571e-02	k: 10334	n:600000
Cons ci ratio: 1.710078e-01	ci left: 8.001768e-04	ci right 9.513761e-04	k: 524	n:600000
KS ci ratio: 4.620697e-03	ci left: 5.440923e-01	ci right 5.466139e-01	k: 327212	n:600000
BHMT   600000 perm   263 sec   (2284 perm/sec)   p_kst 5.453533e-01   p_cons 8.733333e-04   p_joint 1.722333e-02

Joint ci ratio: 3.789521e-02	ci left: 1.691256e-02	ci right 1.756745e-02	k: 10515	n:610000
Cons ci ratio: 1.698793e-01	ci left: 7.980450e-04	ci right 9.477443e-04	k: 531	n:610000
KS ci ratio: 4.583023e-03	ci left: 5.440641e-01	ci right 5.465649e-01	k: 332642	n:610000
BHMT   610000 perm   269 sec   (2264 perm/sec)   p_kst 5.453148e-01   p_cons 8.704918e-04   p_joint 1.723770e-02

Joint ci ratio: 3.725702e-02	ci left: 1.721501e-02	ci right 1.787015e-02	k: 10875	n:620000
Cons ci ratio: 1.683047e-01	ci left: 8.006198e-04	ci right 9.492690e-04	k: 541	n:620000
KS ci ratio: 4.546773e-03	ci left: 5.439805e-01	ci right 5.464610e-01	k: 338037	n:620000
BHMT   620000 perm   276 sec   (2243 perm/sec)   p_kst 5.452210e-01   p_cons 8.725806e-04   p_joint 1.754032e-02

Joint ci ratio: 3.756571e-02	ci left: 1.667121e-02	ci right 1.731102e-02	k: 10703	n:630000
Cons ci ratio: 1.667730e-01	ci left: 8.031191e-04	ci right 9.507391e-04	k: 551	n:630000
KS ci ratio: 4.510098e-03	ci left: 5.440393e-01	ci right 5.465000e-01	k: 343520	n:630000
BHMT   630000 perm   284 sec   (2220 perm/sec)   p_kst 5.452698e-01   p_cons 8.746032e-04   p_joint 1.698889e-02

Joint ci ratio: 3.700010e-02	ci left: 1.691693e-02	ci right 1.755620e-02	k: 11030	n:640000
Cons ci ratio: 1.652825e-01	ci left: 8.055462e-04	ci right 9.521573e-04	k: 561	n:640000
KS ci ratio: 4.475891e-03	ci left: 5.439197e-01	ci right 5.463612e-01	k: 348890	n:640000
BHMT   640000 perm   291 sec   (2201 perm/sec)   p_kst 5.451406e-01   p_cons 8.765625e-04   p_joint 1.723437e-02

Joint ci ratio: 3.684740e-02	ci left: 1.679841e-02	ci right 1.743052e-02	k: 11123	n:650000
Cons ci ratio: 1.632608e-01	ci left: 8.138065e-04	ci right 9.599315e-04	k: 575	n:650000
KS ci ratio: 4.440135e-03	ci left: 5.440624e-01	ci right 5.464849e-01	k: 354428	n:650000
BHMT   650000 perm   298 sec   (2183 perm/sec)   p_kst 5.452738e-01   p_cons 8.846154e-04   p_joint 1.711231e-02

Joint ci ratio: 3.656412e-02	ci left: 1.680361e-02	ci right 1.743095e-02	k: 11296	n:660000
Cons ci ratio: 1.621388e-01	ci left: 8.131038e-04	ci right 9.580015e-04	k: 583	n:660000
KS ci ratio: 4.405490e-03	ci left: 5.441705e-01	ci right 5.465746e-01	k: 359946	n:660000
BHMT   660000 perm   305 sec   (2165 perm/sec)   p_kst 5.453727e-01   p_cons 8.833333e-04   p_joint 1.711515e-02

Joint ci ratio: 3.630177e-02	ci left: 1.679535e-02	ci right 1.741779e-02	k: 11460	n:670000
Cons ci ratio: 1.615870e-01	ci left: 8.066960e-04	ci right 9.499150e-04	k: 587	n:670000
KS ci ratio: 4.371526e-03	ci left: 5.442889e-01	ci right 5.466749e-01	k: 365473	n:670000
BHMT   670000 perm   312 sec   (2147 perm/sec)   p_kst 5.454821e-01   p_cons 8.761194e-04   p_joint 1.710448e-02

Joint ci ratio: 3.535804e-02	ci left: 1.744040e-02	ci right 1.806960e-02	k: 12072	n:680000
Cons ci ratio: 1.606339e-01	ci left: 8.047119e-04	ci right 9.466546e-04	k: 594	n:680000
KS ci ratio: 4.338644e-03	ci left: 5.443686e-01	ci right 5.467369e-01	k: 370976	n:680000
BHMT   680000 perm   319 sec   (2129 perm/sec)   p_kst 5.455529e-01   p_cons 8.735294e-04   p_joint 1.775294e-02

Joint ci ratio: 3.534480e-02	ci left: 1.720484e-02	ci right 1.782531e-02	k: 12084	n:690000
Cons ci ratio: 1.595649e-01	ci left: 8.041790e-04	ci right 9.449933e-04	k: 602	n:690000
KS ci ratio: 4.306945e-03	ci left: 5.443938e-01	ci right 5.467449e-01	k: 376443	n:690000
BHMT   690000 perm   327 sec   (2111 perm/sec)   p_kst 5.455696e-01   p_cons 8.724638e-04   p_joint 1.751304e-02

Joint ci ratio: 3.510330e-02	ci left: 1.719553e-02	ci right 1.781133e-02	k: 12251	n:700000
Cons ci ratio: 1.589078e-01	ci left: 7.995488e-04	ci right 9.389208e-04	k: 607	n:700000
KS ci ratio: 4.275747e-03	ci left: 5.444398e-01	ci right 5.467741e-01	k: 381925	n:700000
BHMT   700000 perm   334 sec   (2093 perm/sec)   p_kst 5.456071e-01   p_cons 8.671429e-04   p_joint 1.750143e-02

Joint ci ratio: 3.547030e-02	ci left: 1.661122e-02	ci right 1.721245e-02	k: 12006	n:710000
Cons ci ratio: 1.567309e-01	ci left: 8.112861e-04	ci right 9.505846e-04	k: 624	n:710000
KS ci ratio: 4.245566e-03	ci left: 5.444438e-01	ci right 5.467615e-01	k: 387378	n:710000
BHMT   710000 perm   342 sec   (2076 perm/sec)   p_kst 5.456028e-01   p_cons 8.788732e-04   p_joint 1.690986e-02

Joint ci ratio: 3.457193e-02	ci left: 1.723968e-02	ci right 1.784754e-02	k: 12630	n:720000
Cons ci ratio: 1.551254e-01	ci left: 8.173695e-04	ci right 9.561413e-04	k: 637	n:720000
KS ci ratio: 4.215602e-03	ci left: 5.444962e-01	ci right 5.467978e-01	k: 392866	n:720000
BHMT   720000 perm   350 sec   (2060 perm/sec)   p_kst 5.456472e-01   p_cons 8.847222e-04   p_joint 1.754167e-02

Joint ci ratio: 3.444596e-02	ci left: 1.713116e-02	ci right 1.773295e-02	k: 12724	n:730000
Cons ci ratio: 1.539237e-01	ci left: 8.193417e-04	ci right 9.572713e-04	k: 647	n:730000
KS ci ratio: 4.185732e-03	ci left: 5.446104e-01	ci right 5.468961e-01	k: 398400	n:730000
BHMT   730000 perm   357 sec   (2043 perm/sec)   p_kst 5.457534e-01   p_cons 8.863014e-04   p_joint 1.743014e-02

Joint ci ratio: 3.436364e-02	ci left: 1.698404e-02	ci right 1.757921e-02	k: 12787	n:740000
Cons ci ratio: 1.522869e-01	ci left: 8.264638e-04	ci right 9.639780e-04	k: 661	n:740000
KS ci ratio: 4.157258e-03	ci left: 5.446296e-01	ci right 5.468998e-01	k: 403866	n:740000
BHMT   740000 perm   365 sec   (2027 perm/sec)   p_kst 5.457649e-01   p_cons 8.932432e-04   p_joint 1.727973e-02

Joint ci ratio: 3.416573e-02	ci left: 1.695455e-02	ci right 1.754519e-02	k: 12936	n:750000
Cons ci ratio: 1.514882e-01	ci left: 8.244229e-04	ci right 9.608129e-04	k: 668	n:750000
KS ci ratio: 4.128336e-03	ci left: 5.447710e-01	ci right 5.470260e-01	k: 409424	n:750000
BHMT   750000 perm   373 sec   (2011 perm/sec)   p_kst 5.458987e-01   p_cons 8.906667e-04   p_joint 1.724800e-02

Joint ci ratio: 3.417908e-02	ci left: 1.672230e-02	ci right 1.730508e-02	k: 12929	n:760000
Cons ci ratio: 1.503685e-01	ci left: 8.262362e-04	ci right 9.618250e-04	k: 678	n:760000
KS ci ratio: 4.101402e-03	ci left: 5.447403e-01	ci right 5.469804e-01	k: 414854	n:760000
BHMT   760000 perm   381 sec   (1996 perm/sec)   p_kst 5.458605e-01   p_cons 8.921053e-04   p_joint 1.701184e-02

Joint ci ratio: 3.515943e-02	ci left: 1.560761e-02	ci right 1.616746e-02	k: 12232	n:770000
Cons ci ratio: 1.494905e-01	ci left: 8.255057e-04	ci right 9.601128e-04	k: 686	n:770000
KS ci ratio: 4.074625e-03	ci left: 5.447546e-01	ci right 5.469801e-01	k: 420318	n:770000
BHMT   770000 perm   389 sec   (1980 perm/sec)   p_kst 5.458675e-01   p_cons 8.909091e-04   p_joint 1.588571e-02

Joint ci ratio: 3.521281e-02	ci left: 1.536428e-02	ci right 1.591625e-02	k: 12198	n:780000
Cons ci ratio: 1.487349e-01	ci left: 8.235618e-04	ci right 9.571127e-04	k: 693	n:780000
KS ci ratio: 4.048501e-03	ci left: 5.447519e-01	ci right 5.469631e-01	k: 425769	n:780000
BHMT   780000 perm   397 sec   (1966 perm/sec)   p_kst 5.458577e-01   p_cons 8.884615e-04   p_joint 1.563846e-02

Joint ci ratio: 3.341071e-02	ci left: 1.684036e-02	ci right 1.741382e-02	k: 13529	n:790000
Cons ci ratio: 1.470488e-01	ci left: 8.326410e-04	ci right 9.659991e-04	k: 709	n:790000
KS ci ratio: 4.023429e-03	ci left: 5.446810e-01	ci right 5.468781e-01	k: 431166	n:790000
BHMT   790000 perm   405 sec   (1951 perm/sec)   p_kst 5.457797e-01   p_cons 8.974684e-04   p_joint 1.712532e-02

Joint ci ratio: 3.332053e-02	ci left: 1.672281e-02	ci right 1.729069e-02	k: 13604	n:800000
Cons ci ratio: 1.461255e-01	ci left: 8.330704e-04	ci right 9.655864e-04	k: 718	n:800000
KS ci ratio: 3.998131e-03	ci left: 5.446969e-01	ci right 5.468803e-01	k: 436631	n:800000
BHMT   800000 perm   413 sec   (1936 perm/sec)   p_kst 5.457888e-01   p_cons 8.975000e-04   p_joint 1.700500e-02

Joint ci ratio: 3.344053e-02	ci left: 1.640246e-02	ci right 1.696150e-02	k: 13511	n:810000
Cons ci ratio: 1.454195e-01	ci left: 8.311122e-04	ci right 9.626227e-04	k: 725	n:810000
KS ci ratio: 3.972869e-03	ci left: 5.447668e-01	ci right 5.469366e-01	k: 442140	n:810000
BHMT   810000 perm   421 sec   (1922 perm/sec)   p_kst 5.458519e-01   p_cons 8.950617e-04   p_joint 1.668025e-02

Joint ci ratio: 3.419669e-02	ci left: 1.550217e-02	ci right 1.604272e-02	k: 12932	n:820000
Cons ci ratio: 1.444282e-01	ci left: 8.327297e-04	ci right 9.635203e-04	k: 735	n:820000
KS ci ratio: 3.948264e-03	ci left: 5.448118e-01	ci right 5.469683e-01	k: 447630	n:820000
BHMT   820000 perm   430 sec   (1908 perm/sec)   p_kst 5.458902e-01   p_cons 8.963415e-04   p_joint 1.577073e-02

Joint ci ratio: 3.399365e-02	ci left: 1.550056e-02	ci right 1.603777e-02	k: 13087	n:830000
Cons ci ratio: 1.438433e-01	ci left: 8.296649e-04	ci right 9.594012e-04	k: 741	n:830000
KS ci ratio: 3.924101e-03	ci left: 5.448570e-01	ci right 5.470005e-01	k: 453121	n:830000
BHMT   830000 perm   438 sec   (1893 perm/sec)   p_kst 5.459289e-01   p_cons 8.927711e-04   p_joint 1.576747e-02

Joint ci ratio: 3.375536e-02	ci left: 1.553440e-02	ci right 1.606894e-02	k: 13272	n:840000
Cons ci ratio: 1.428836e-01	ci left: 8.312658e-04	ci right 9.603112e-04	k: 751	n:840000
KS ci ratio: 3.900423e-03	ci left: 5.448952e-01	ci right 5.470259e-01	k: 458607	n:840000
BHMT   840000 perm   447 sec   (1879 perm/sec)   p_kst 5.459607e-01   p_cons 8.940476e-04   p_joint 1.580000e-02

Joint ci ratio: 3.354480e-02	ci left: 1.554646e-02	ci right 1.607802e-02	k: 13439	n:850000
Cons ci ratio: 1.420362e-01	ci left: 8.316970e-04	ci right 9.599788e-04	k: 760	n:850000
KS ci ratio: 3.877556e-03	ci left: 5.448832e-01	ci right 5.470012e-01	k: 464051	n:850000
BHMT   850000 perm   456 sec   (1866 perm/sec)   p_kst 5.459424e-01   p_cons 8.941176e-04   p_joint 1.581059e-02

Joint ci ratio: 3.204189e-02	ci left: 1.683166e-02	ci right 1.738090e-02	k: 14710	n:860000
Cons ci ratio: 1.410205e-01	ci left: 8.343640e-04	ci right 9.620594e-04	k: 771	n:860000
KS ci ratio: 3.854651e-03	ci left: 5.449272e-01	ci right 5.470329e-01	k: 469543	n:860000
BHMT   860000 perm   464 sec   (1852 perm/sec)   p_kst 5.459802e-01   p_cons 8.965116e-04   p_joint 1.710465e-02

Joint ci ratio: 3.197442e-02	ci left: 1.671115e-02	ci right 1.725529e-02	k: 14774	n:870000
Cons ci ratio: 1.407477e-01	ci left: 8.281002e-04	ci right 9.545713e-04	k: 774	n:870000
KS ci ratio: 3.831651e-03	ci left: 5.450347e-01	ci right 5.471282e-01	k: 475091	n:870000
BHMT   870000 perm   473 sec   (1839 perm/sec)   p_kst 5.460816e-01   p_cons 8.896552e-04   p_joint 1.698161e-02

Joint ci ratio: 3.134067e-02	ci left: 1.719323e-02	ci right 1.774177e-02	k: 15370	n:880000
Cons ci ratio: 1.397592e-01	ci left: 8.307514e-04	ci right 9.566621e-04	k: 785	n:880000
KS ci ratio: 3.809703e-03	ci left: 5.450557e-01	ci right 5.471372e-01	k: 480565	n:880000
BHMT   880000 perm   482 sec   (1825 perm/sec)   p_kst 5.460966e-01   p_cons 8.920455e-04   p_joint 1.746591e-02

Joint ci ratio: 3.132722e-02	ci left: 1.701786e-02	ci right 1.756057e-02	k: 15386	n:890000
Cons ci ratio: 1.391412e-01	ci left: 8.290078e-04	ci right 9.540526e-04	k: 792	n:890000
KS ci ratio: 3.788325e-03	ci left: 5.450503e-01	ci right 5.471202e-01	k: 486016	n:890000
BHMT   890000 perm   491 sec   (1812 perm/sec)   p_kst 5.460854e-01   p_cons 8.898876e-04   p_joint 1.728764e-02

Joint ci ratio: 3.125185e-02	ci left: 1.691254e-02	ci right 1.745057e-02	k: 15462	n:900000
Cons ci ratio: 1.382720e-01	ci left: 8.305222e-04	ci right 9.549484e-04	k: 802	n:900000
KS ci ratio: 3.766712e-03	ci left: 5.451229e-01	ci right 5.471812e-01	k: 491537	n:900000
BHMT   900000 perm   500 sec   (1799 perm/sec)   p_kst 5.461522e-01   p_cons 8.911111e-04   p_joint 1.718000e-02

Joint ci ratio: 3.125177e-02	ci left: 1.672994e-02	ci right 1.726216e-02	k: 15465	n:910000
Cons ci ratio: 1.373344e-01	ci left: 8.330668e-04	ci right 9.569588e-04	k: 813	n:910000
KS ci ratio: 3.745274e-03	ci left: 5.452193e-01	ci right 5.472662e-01	k: 497081	n:910000
BHMT   910000 perm   509 sec   (1787 perm/sec)   p_kst 5.462429e-01   p_cons 8.934066e-04   p_joint 1.699451e-02

Joint ci ratio: 3.145596e-02	ci left: 1.633882e-02	ci right 1.686206e-02	k: 15271	n:920000
Cons ci ratio: 1.367478e-01	ci left: 8.313595e-04	ci right 9.544265e-04	k: 820	n:920000
KS ci ratio: 3.724304e-03	ci left: 5.452994e-01	ci right 5.473351e-01	k: 502612	n:920000
BHMT   920000 perm   518 sec   (1775 perm/sec)   p_kst 5.463174e-01   p_cons 8.913043e-04   p_joint 1.659891e-02

Joint ci ratio: 3.136914e-02	ci left: 1.625487e-02	ci right 1.677395e-02	k: 15357	n:930000
Cons ci ratio: 1.360865e-01	ci left: 8.307287e-04	ci right 9.530594e-04	k: 828	n:930000
KS ci ratio: 3.704164e-03	ci left: 5.453133e-01	ci right 5.473380e-01	k: 508083	n:930000
BHMT   930000 perm   527 sec   (1764 perm/sec)   p_kst 5.463258e-01   p_cons 8.903226e-04   p_joint 1.651290e-02

Joint ci ratio: 3.119891e-02	ci left: 1.625927e-02	ci right 1.677563e-02	k: 15525	n:940000
Cons ci ratio: 1.356782e-01	ci left: 8.270294e-04	ci right 9.484205e-04	k: 833	n:940000
KS ci ratio: 3.684418e-03	ci left: 5.453174e-01	ci right 5.473313e-01	k: 513545	n:940000
BHMT   940000 perm   536 sec   (1752 perm/sec)   p_kst 5.463245e-01   p_cons 8.861702e-04   p_joint 1.651596e-02

Joint ci ratio: 3.091447e-02	ci left: 1.638581e-02	ci right 1.690135e-02	k: 15810	n:950000
Cons ci ratio: 1.345532e-01	ci left: 8.325627e-04	ci right 9.536716e-04	k: 847	n:950000
KS ci ratio: 3.664930e-03	ci left: 5.453287e-01	ci right 5.473320e-01	k: 519014	n:950000
BHMT   950000 perm   546 sec   (1741 perm/sec)   p_kst 5.463305e-01   p_cons 8.915789e-04   p_joint 1.664211e-02

Joint ci ratio: 3.076325e-02	ci left: 1.637637e-02	ci right 1.688905e-02	k: 15966	n:960000
Cons ci ratio: 1.337667e-01	ci left: 8.339573e-04	ci right 9.545036e-04	k: 857	n:960000
KS ci ratio: 3.646224e-03	ci left: 5.452753e-01	ci right 5.472682e-01	k: 524421	n:960000
BHMT   960000 perm   555 sec   (1730 perm/sec)   p_kst 5.462719e-01   p_cons 8.927083e-04   p_joint 1.663125e-02

Joint ci ratio: 3.067328e-02	ci left: 1.630472e-02	ci right 1.681364e-02	k: 16061	n:970000
Cons ci ratio: 1.329172e-01	ci left: 8.363218e-04	ci right 9.563815e-04	k: 868	n:970000
KS ci ratio: 3.626872e-03	ci left: 5.453498e-01	ci right 5.473324e-01	k: 529951	n:970000
BHMT   970000 perm   564 sec   (1718 perm/sec)   p_kst 5.463412e-01   p_cons 8.948454e-04   p_joint 1.655773e-02

Joint ci ratio: 3.058987e-02	ci left: 1.622845e-02	ci right 1.673359e-02	k: 16150	n:980000
Cons ci ratio: 1.323853e-01	ci left: 8.346936e-04	ci right 9.540023e-04	k: 875	n:980000
KS ci ratio: 3.608450e-03	ci left: 5.453371e-01	ci right 5.473095e-01	k: 535397	n:980000
BHMT   980000 perm   574 sec   (1707 perm/sec)   p_kst 5.463235e-01   p_cons 8.928571e-04   p_joint 1.647959e-02

Joint ci ratio: 3.021060e-02	ci left: 1.646954e-02	ci right 1.697572e-02	k: 16554	n:990000
Cons ci ratio: 1.317849e-01	ci left: 8.340762e-04	ci right 9.527137e-04	k: 883	n:990000
KS ci ratio: 3.590671e-03	ci left: 5.452742e-01	ci right 5.472366e-01	k: 540793	n:990000
BHMT   990000 perm   584 sec   (1696 perm/sec)   p_kst 5.462556e-01   p_cons 8.919192e-04   p_joint 1.672121e-02

Joint ci ratio: 3.003563e-02	ci left: 1.649639e-02	ci right 1.700041e-02	k: 16747	n:1000000
Cons ci ratio: 1.311927e-01	ci left: 8.334722e-04	ci right 9.514496e-04	k: 891	n:1000000
KS ci ratio: 3.572821e-03	ci left: 5.452586e-01	ci right 5.472111e-01	k: 546235	n:1000000
BHMT   1000000 perm   593 sec   (1685 perm/sec)   p_kst 5.462350e-01   p_cons 8.910000e-04   p_joint 1.674700e-02

Joint ci ratio: 2.994557e-02	ci left: 1.643329e-02	ci right 1.693385e-02	k: 16849	n:1010000
Cons ci ratio: 1.303188e-01	ci left: 8.367127e-04	ci right 9.542988e-04	k: 903	n:1010000
KS ci ratio: 3.555603e-03	ci left: 5.451918e-01	ci right 5.471347e-01	k: 551625	n:1010000
BHMT   1010000 perm   603 sec   (1674 perm/sec)   p_kst 5.461634e-01   p_cons 8.940594e-04   p_joint 1.668218e-02

Joint ci ratio: 3.006347e-02	ci left: 1.614857e-02	ci right 1.664242e-02	k: 16722	n:1020000
Cons ci ratio: 1.299602e-01	ci left: 8.332519e-04	ci right 9.500045e-04	k: 908	n:1020000
KS ci ratio: 3.538548e-03	ci left: 5.451381e-01	ci right 5.470715e-01	k: 557027	n:1020000
BHMT   1020000 perm   613 sec   (1664 perm/sec)   p_kst 5.461049e-01   p_cons 8.901961e-04   p_joint 1.639412e-02

Joint ci ratio: 3.003761e-02	ci left: 1.602164e-02	ci right 1.651118e-02	k: 16753	n:1030000
Cons ci ratio: 1.289705e-01	ci left: 8.383142e-04	ci right 9.548132e-04	k: 922	n:1030000
KS ci ratio: 3.521309e-03	ci left: 5.451457e-01	ci right 5.470696e-01	k: 562491	n:1030000
BHMT   1030000 perm   623 sec   (1653 perm/sec)   p_kst 5.461078e-01   p_cons 8.951456e-04   p_joint 1.626505e-02

Joint ci ratio: 2.999727e-02	ci left: 1.591242e-02	ci right 1.639797e-02	k: 16800	n:1040000
Cons ci ratio: 1.284843e-01	ci left: 8.367675e-04	ci right 9.525797e-04	k: 929	n:1040000
KS ci ratio: 3.504686e-03	ci left: 5.451012e-01	ci right 5.470159e-01	k: 567901	n:1040000
BHMT   1040000 perm   633 sec   (1642 perm/sec)   p_kst 5.460587e-01   p_cons 8.932692e-04   p_joint 1.615385e-02

Joint ci ratio: 2.973276e-02	ci left: 1.604258e-02	ci right 1.652771e-02	k: 17098	n:1050000
Cons ci ratio: 1.275954e-01	ci left: 8.407828e-04	ci right 9.562847e-04	k: 942	n:1050000
KS ci ratio: 3.487498e-03	ci left: 5.451709e-01	ci right 5.470764e-01	k: 573430	n:1050000
BHMT   1050000 perm   643 sec   (1632 perm/sec)   p_kst 5.461238e-01   p_cons 8.971429e-04   p_joint 1.628381e-02

Joint ci ratio: 2.960774e-02	ci left: 1.602701e-02	ci right 1.650960e-02	k: 17243	n:1060000
Cons ci ratio: 1.269908e-01	ci left: 8.410711e-04	ci right 9.560239e-04	k: 951	n:1060000
KS ci ratio: 3.471367e-03	ci left: 5.451243e-01	ci right 5.470208e-01	k: 578837	n:1060000
BHMT   1060000 perm   654 sec   (1622 perm/sec)   p_kst 5.460726e-01   p_cons 8.971698e-04   p_joint 1.626698e-02

Joint ci ratio: 2.949118e-02	ci left: 1.600432e-02	ci right 1.648429e-02	k: 17380	n:1070000
Cons ci ratio: 1.261323e-01	ci left: 8.449756e-04	ci right 9.596230e-04	k: 964	n:1070000
KS ci ratio: 3.455087e-03	ci left: 5.451318e-01	ci right 5.470194e-01	k: 584301	n:1070000
BHMT   1070000 perm   664 sec   (1612 perm/sec)   p_kst 5.460757e-01   p_cons 9.009346e-04   p_joint 1.624299e-02

Joint ci ratio: 2.937258e-02	ci left: 1.598572e-02	ci right 1.646317e-02	k: 17521	n:1080000
Cons ci ratio: 1.247179e-01	ci left: 8.568833e-04	ci right 9.717464e-04	k: 986	n:1080000
KS ci ratio: 3.439515e-03	ci left: 5.450697e-01	ci right 5.469486e-01	k: 589690	n:1080000
BHMT   1080000 perm   674 sec   (1602 perm/sec)   p_kst 5.460093e-01   p_cons 9.129630e-04   p_joint 1.622315e-02

Joint ci ratio: 2.937992e-02	ci left: 1.583358e-02	ci right 1.630661e-02	k: 17515	n:1090000
Cons ci ratio: 1.240286e-01	ci left: 8.587998e-04	ci right 9.732367e-04	k: 997	n:1090000
KS ci ratio: 3.423144e-03	ci left: 5.451547e-01	ci right 5.470249e-01	k: 595238	n:1090000
BHMT   1090000 perm   685 sec   (1592 perm/sec)   p_kst 5.460899e-01   p_cons 9.146789e-04   p_joint 1.606881e-02

Joint ci ratio: 2.928287e-02	ci left: 1.579522e-02	ci right 1.626552e-02	k: 17632	n:1100000
Cons ci ratio: 1.234118e-01	ci left: 8.598021e-04	ci right 9.737612e-04	k: 1007	n:1100000
KS ci ratio: 3.407529e-03	ci left: 5.451618e-01	ci right 5.470235e-01	k: 600702	n:1100000
BHMT   1100000 perm   695 sec   (1582 perm/sec)   p_kst 5.460927e-01   p_cons 9.154545e-04   p_joint 1.602909e-02

Joint ci ratio: 2.914926e-02	ci left: 1.579780e-02	ci right 1.626599e-02	k: 17794	n:1110000
Cons ci ratio: 1.229250e-01	ci left: 8.590413e-04	ci right 9.724178e-04	k: 1015	n:1110000
KS ci ratio: 3.392564e-03	ci left: 5.451048e-01	ci right 5.469581e-01	k: 606095	n:1110000
BHMT   1110000 perm   706 sec   (1573 perm/sec)   p_kst 5.460315e-01   p_cons 9.144144e-04   p_joint 1.603063e-02

Joint ci ratio: 2.900596e-02	ci left: 1.581275e-02	ci right 1.627904e-02	k: 17970	n:1120000
Cons ci ratio: 1.222053e-01	ci left: 8.617572e-04	ci right 9.747780e-04	k: 1027	n:1120000
KS ci ratio: 3.377405e-03	ci left: 5.451059e-01	ci right 5.469510e-01	k: 611552	n:1120000
BHMT   1120000 perm   716 sec   (1564 perm/sec)   p_kst 5.460286e-01   p_cons 9.169643e-04   p_joint 1.604464e-02

Joint ci ratio: 2.884619e-02	ci left: 1.584765e-02	ci right 1.631236e-02	k: 18169	n:1130000
Cons ci ratio: 1.217914e-01	ci left: 8.601366e-04	ci right 9.725354e-04	k: 1034	n:1130000
KS ci ratio: 3.362027e-03	ci left: 5.451691e-01	ci right 5.470059e-01	k: 617079	n:1130000
BHMT   1130000 perm   727 sec   (1554 perm/sec)   p_kst 5.460876e-01   p_cons 9.150442e-04   p_joint 1.607876e-02

Joint ci ratio: 2.886925e-02	ci left: 1.568598e-02	ci right 1.614631e-02	k: 18143	n:1140000
Cons ci ratio: 1.213235e-01	ci left: 8.593957e-04	ci right 9.712352e-04	k: 1042	n:1140000
KS ci ratio: 3.347130e-03	ci left: 5.451908e-01	ci right 5.470195e-01	k: 622560	n:1140000
BHMT   1140000 perm   738 sec   (1545 perm/sec)   p_kst 5.461053e-01   p_cons 9.140351e-04   p_joint 1.591491e-02

Joint ci ratio: 2.880602e-02	ci left: 1.561950e-02	ci right 1.607686e-02	k: 18224	n:1150000
Cons ci ratio: 1.211497e-01	ci left: 8.544521e-04	ci right 9.654776e-04	k: 1045	n:1150000
KS ci ratio: 3.332697e-03	ci left: 5.451721e-01	ci right 5.469929e-01	k: 627995	n:1150000
BHMT   1150000 perm   749 sec   (1536 perm/sec)   p_kst 5.460826e-01   p_cons 9.086957e-04   p_joint 1.584696e-02

Joint ci ratio: 2.873124e-02	ci left: 1.556700e-02	ci right 1.602163e-02	k: 18320	n:1160000
Cons ci ratio: 1.206319e-01	ci left: 8.546102e-04	ci right 9.651476e-04	k: 1054	n:1160000
KS ci ratio: 3.318127e-03	ci left: 5.452021e-01	ci right 5.470149e-01	k: 633486	n:1160000
BHMT   1160000 perm   760 sec   (1527 perm/sec)   p_kst 5.461086e-01   p_cons 9.086207e-04   p_joint 1.579310e-02

Joint ci ratio: 2.860028e-02	ci left: 1.557651e-02	ci right 1.602931e-02	k: 18488	n:1170000
Cons ci ratio: 1.202338e-01	ci left: 8.531084e-04	ci right 9.630616e-04	k: 1061	n:1170000
KS ci ratio: 3.304077e-03	ci left: 5.451819e-01	ci right 5.469871e-01	k: 638919	n:1170000
BHMT   1170000 perm   771 sec   (1518 perm/sec)   p_kst 5.460846e-01   p_cons 9.068376e-04   p_joint 1.580171e-02

Joint ci ratio: 2.837083e-02	ci left: 1.569527e-02	ci right 1.614779e-02	k: 18786	n:1180000
Cons ci ratio: 1.197835e-01	ci left: 8.524548e-04	ci right 9.618832e-04	k: 1069	n:1180000
KS ci ratio: 3.289911e-03	ci left: 5.452062e-01	ci right 5.470037e-01	k: 644404	n:1180000
BHMT   1180000 perm   782 sec   (1509 perm/sec)   p_kst 5.461051e-01   p_cons 9.059322e-04   p_joint 1.592034e-02

Joint ci ratio: 2.824548e-02	ci left: 1.570272e-02	ci right 1.615343e-02	k: 18953	n:1190000
Cons ci ratio: 1.190622e-01	ci left: 8.558895e-04	ci right 9.650506e-04	k: 1082	n:1190000
KS ci ratio: 3.275959e-03	ci left: 5.452251e-01	ci right 5.470150e-01	k: 649883	n:1190000
BHMT   1190000 perm   793 sec   (1501 perm/sec)   p_kst 5.461202e-01   p_cons 9.092437e-04   p_joint 1.592689e-02

Joint ci ratio: 2.812850e-02	ci left: 1.570260e-02	ci right 1.615141e-02	k: 19111	n:1200000
Cons ci ratio: 1.186249e-01	ci left: 8.552255e-04	ci right 9.638733e-04	k: 1090	n:1200000
KS ci ratio: 3.261931e-03	ci left: 5.452820e-01	ci right 5.470644e-01	k: 655408	n:1200000
BHMT   1200000 perm   804 sec   (1492 perm/sec)   p_kst 5.461733e-01   p_cons 9.083333e-04   p_joint 1.592583e-02

Joint ci ratio: 2.767770e-02	ci left: 1.608169e-02	ci right 1.653385e-02	k: 19731	n:1210000
Cons ci ratio: 1.181924e-01	ci left: 8.545733e-04	ci right 9.627147e-04	k: 1098	n:1210000
KS ci ratio: 3.248980e-03	ci left: 5.452008e-01	ci right 5.469758e-01	k: 660767	n:1210000
BHMT   1210000 perm   816 sec   (1483 perm/sec)   p_kst 5.460884e-01   p_cons 9.074380e-04   p_joint 1.630661e-02

Joint ci ratio: 2.764329e-02	ci left: 1.599138e-02	ci right 1.644043e-02	k: 19782	n:1220000
Cons ci ratio: 1.178713e-01	ci left: 8.523414e-04	ci right 9.598868e-04	k: 1104	n:1220000
KS ci ratio: 3.235845e-03	ci left: 5.451726e-01	ci right 5.469403e-01	k: 666189	n:1220000
BHMT   1220000 perm   828 sec   (1474 perm/sec)   p_kst 5.460566e-01   p_cons 9.049180e-04   p_joint 1.621475e-02

Joint ci ratio: 2.756947e-02	ci left: 1.594775e-02	ci right 1.639437e-02	k: 19889	n:1230000
Cons ci ratio: 1.174469e-01	ci left: 8.517244e-04	ci right 9.587783e-04	k: 1112	n:1230000
KS ci ratio: 3.222620e-03	ci left: 5.451830e-01	ci right 5.469436e-01	k: 671658	n:1230000
BHMT   1230000 perm   839 sec   (1465 perm/sec)   p_kst 5.460634e-01   p_cons 9.040650e-04   p_joint 1.616992e-02

Joint ci ratio: 2.737404e-02	ci left: 1.604581e-02	ci right 1.649194e-02	k: 20172	n:1240000
Cons ci ratio: 1.172367e-01	ci left: 8.479867e-04	ci right 9.543668e-04	k: 1116	n:1240000
KS ci ratio: 3.209331e-03	ci left: 5.452280e-01	ci right 5.469814e-01	k: 677170	n:1240000
BHMT   1240000 perm   851 sec   (1457 perm/sec)   p_kst 5.461048e-01   p_cons 9.000000e-04   p_joint 1.626774e-02

Joint ci ratio: 2.731605e-02	ci left: 1.598656e-02	ci right 1.643008e-02	k: 20259	n:1250000
Cons ci ratio: 1.167154e-01	ci left: 8.489687e-04	ci right 9.549658e-04	k: 1126	n:1250000
KS ci ratio: 3.196700e-03	ci left: 5.451955e-01	ci right 5.469419e-01	k: 682586	n:1250000
BHMT   1250000 perm   863 sec   (1449 perm/sec)   p_kst 5.460688e-01   p_cons 9.008000e-04   p_joint 1.620720e-02

Joint ci ratio: 2.724684e-02	ci left: 1.594166e-02	ci right 1.638279e-02	k: 20363	n:1260000
Cons ci ratio: 1.164061e-01	ci left: 8.468539e-04	ci right 9.522874e-04	k: 1132	n:1260000
KS ci ratio: 3.183871e-03	ci left: 5.452175e-01	ci right 5.469569e-01	k: 688070	n:1260000
BHMT   1260000 perm   874 sec   (1441 perm/sec)   p_kst 5.460873e-01   p_cons 8.984127e-04   p_joint 1.616111e-02

Joint ci ratio: 2.703022e-02	ci left: 1.607031e-02	ci right 1.651142e-02	k: 20688	n:1270000
Cons ci ratio: 1.156428e-01	ci left: 8.516541e-04	ci right 9.569426e-04	k: 1147	n:1270000
KS ci ratio: 3.171487e-03	ci left: 5.451934e-01	ci right 5.469260e-01	k: 693496	n:1270000
BHMT   1270000 perm   886 sec   (1433 perm/sec)   p_kst 5.460598e-01   p_cons 9.031496e-04   p_joint 1.628976e-02

Joint ci ratio: 2.684009e-02	ci left: 1.617136e-02	ci right 1.661208e-02	k: 20980	n:1280000
Cons ci ratio: 1.152919e-01	ci left: 8.503114e-04	ci right 9.550932e-04	k: 1154	n:1280000
KS ci ratio: 3.158988e-03	ci left: 5.452104e-01	ci right 5.469362e-01	k: 698974	n:1280000
BHMT   1280000 perm   898 sec   (1425 perm/sec)   p_kst 5.460734e-01   p_cons 9.015625e-04   p_joint 1.639062e-02

Joint ci ratio: 2.630711e-02	ci left: 1.669829e-02	ci right 1.714419e-02	k: 21827	n:1290000
Cons ci ratio: 1.148453e-01	ci left: 8.504957e-04	ci right 9.548668e-04	k: 1163	n:1290000
KS ci ratio: 3.060896e-03	ci left: 5.588870e-01	ci right 5.606011e-01	k: 722070	n:1290000
BHMT   1290000 perm   910 sec   (1417 perm/sec)   p_kst 5.597442e-01   p_cons 9.015504e-04   p_joint 1.692016e-02

Joint ci ratio: 2.613224e-02	ci left: 1.679223e-02	ci right 1.723762e-02	k: 22118	n:1300000
Cons ci ratio: 1.143064e-01	ci left: 8.521726e-04	ci right 9.562255e-04	k: 1174	n:1300000
KS ci ratio: 3.049183e-03	ci left: 5.588769e-01	ci right 5.605844e-01	k: 727650	n:1300000
BHMT   1300000 perm   922 sec   (1409 perm/sec)   p_kst 5.597308e-01   p_cons 9.030769e-04   p_joint 1.701385e-02

Joint ci ratio: 2.603062e-02	ci left: 1.679525e-02	ci right 1.723895e-02	k: 22291	n:1310000
Cons ci ratio: 1.137270e-01	ci left: 8.545665e-04	ci right 9.583475e-04	k: 1186	n:1310000
KS ci ratio: 3.037125e-03	ci left: 5.589448e-01	ci right 5.606457e-01	k: 733332	n:1310000
BHMT   1310000 perm   935 sec   (1402 perm/sec)   p_kst 5.597954e-01   p_cons 9.053435e-04   p_joint 1.701603e-02

Joint ci ratio: 2.572703e-02	ci left: 1.706169e-02	ci right 1.750710e-02	k: 22814	n:1320000
Cons ci ratio: 1.135361e-01	ci left: 8.510366e-04	ci right 9.542038e-04	k: 1190	n:1320000
KS ci ratio: 3.025491e-03	ci left: 5.589655e-01	ci right 5.606600e-01	k: 738953	n:1320000
BHMT   1320000 perm   947 sec   (1394 perm/sec)   p_kst 5.598129e-01   p_cons 9.015152e-04   p_joint 1.728333e-02

Joint ci ratio: 2.562494e-02	ci left: 1.706937e-02	ci right 1.751319e-02	k: 22996	n:1330000
Cons ci ratio: 1.131095e-01	ci left: 8.512130e-04	ci right 9.539879e-04	k: 1199	n:1330000
KS ci ratio: 3.014115e-03	ci left: 5.589656e-01	ci right 5.606537e-01	k: 744547	n:1330000
BHMT   1330000 perm   959 sec   (1387 perm/sec)   p_kst 5.598098e-01   p_cons 9.015038e-04   p_joint 1.729023e-02

Joint ci ratio: 2.607255e-02	ci left: 1.637322e-02	ci right 1.680648e-02	k: 22229	n:1340000
Cons ci ratio: 1.126878e-01	ci left: 8.513874e-04	ci right 9.537746e-04	k: 1208	n:1340000
KS ci ratio: 3.002979e-03	ci left: 5.589471e-01	ci right 5.606288e-01	k: 750116	n:1340000
BHMT   1340000 perm   971 sec   (1380 perm/sec)   p_kst 5.597881e-01   p_cons 9.014925e-04   p_joint 1.658881e-02

Joint ci ratio: 2.612022e-02	ci left: 1.619525e-02	ci right 1.662460e-02	k: 22152	n:1350000
Cons ci ratio: 1.123630e-01	ci left: 8.501201e-04	ci right 9.520407e-04	k: 1215	n:1350000
KS ci ratio: 2.991625e-03	ci left: 5.589851e-01	ci right 5.606606e-01	k: 755761	n:1350000
BHMT   1350000 perm   984 sec   (1372 perm/sec)   p_kst 5.598230e-01   p_cons 9.000000e-04   p_joint 1.640889e-02

Joint ci ratio: 2.626257e-02	ci left: 1.590594e-02	ci right 1.632995e-02	k: 21919	n:1360000
Cons ci ratio: 1.119495e-01	ci left: 8.503012e-04	ci right 9.518436e-04	k: 1224	n:1360000
KS ci ratio: 2.980411e-03	ci left: 5.590204e-01	ci right 5.606897e-01	k: 761403	n:1360000
BHMT   1360000 perm   996 sec   (1365 perm/sec)   p_kst 5.598551e-01   p_cons 9.000000e-04   p_joint 1.611691e-02

Joint ci ratio: 2.620528e-02	ci left: 1.586017e-02	ci right 1.628203e-02	k: 22016	n:1370000
Cons ci ratio: 1.115858e-01	ci left: 8.497708e-04	ci right 9.508985e-04	k: 1232	n:1370000
KS ci ratio: 2.969393e-03	ci left: 5.590435e-01	ci right 5.607067e-01	k: 767029	n:1370000
BHMT   1370000 perm   1009 sec   (1357 perm/sec)   p_kst 5.598752e-01   p_cons 8.992701e-04   p_joint 1.607007e-02

Joint ci ratio: 2.596932e-02	ci left: 1.603178e-02	ci right 1.645431e-02	k: 22414	n:1380000
Cons ci ratio: 1.111807e-01	ci left: 8.499531e-04	ci right 9.507113e-04	k: 1241	n:1380000
KS ci ratio: 2.958801e-03	ci left: 5.590155e-01	ci right 5.606727e-01	k: 772585	n:1380000
BHMT   1380000 perm   1022 sec   (1350 perm/sec)   p_kst 5.598442e-01   p_cons 8.992754e-04   p_joint 1.624203e-02

Joint ci ratio: 2.602579e-02	ci left: 1.584996e-02	ci right 1.626861e-02	k: 22321	n:1390000
Cons ci ratio: 1.110023e-01	ci left: 8.466359e-04	ci right 9.468293e-04	k: 1245	n:1390000
KS ci ratio: 2.947874e-03	ci left: 5.590628e-01	ci right 5.607139e-01	k: 778245	n:1390000
BHMT   1390000 perm   1035 sec   (1343 perm/sec)   p_kst 5.598885e-01   p_cons 8.956835e-04   p_joint 1.605827e-02

Joint ci ratio: 2.578422e-02	ci left: 1.603198e-02	ci right 1.645145e-02	k: 22737	n:1400000
Cons ci ratio: 1.104276e-01	ci left: 8.496172e-04	ci right 9.496089e-04	k: 1258	n:1400000
KS ci ratio: 2.937752e-03	ci left: 5.589944e-01	ci right 5.606397e-01	k: 783744	n:1400000
BHMT   1400000 perm   1047 sec   (1337 perm/sec)   p_kst 5.598171e-01   p_cons 8.985714e-04   p_joint 1.624071e-02

Joint ci ratio: 2.569343e-02	ci left: 1.603173e-02	ci right 1.644970e-02	k: 22898	n:1410000
Cons ci ratio: 1.101655e-01	ci left: 8.477294e-04	ci right 9.472468e-04	k: 1264	n:1410000
KS ci ratio: 2.927034e-03	ci left: 5.590447e-01	ci right 5.606841e-01	k: 789409	n:1410000
BHMT   1410000 perm   1060 sec   (1330 perm/sec)   p_kst 5.598645e-01   p_cons 8.964539e-04   p_joint 1.623972e-02

Joint ci ratio: 2.575099e-02	ci left: 1.585024e-02	ci right 1.626441e-02	k: 22800	n:1420000
Cons ci ratio: 1.097326e-01	ci left: 8.486081e-04	ci right 9.478119e-04	k: 1274	n:1420000
KS ci ratio: 2.916383e-03	ci left: 5.591028e-01	ci right 5.607364e-01	k: 795086	n:1420000
BHMT   1420000 perm   1074 sec   (1323 perm/sec)   p_kst 5.599197e-01   p_cons 8.971831e-04   p_joint 1.605634e-02

Joint ci ratio: 2.547291e-02	ci left: 1.608336e-02	ci right 1.649902e-02	k: 23295	n:1430000
Cons ci ratio: 1.093474e-01	ci left: 8.487951e-04	ci right 9.476499e-04	k: 1283	n:1430000
KS ci ratio: 2.906041e-03	ci left: 5.591272e-01	ci right 5.607551e-01	k: 800716	n:1430000
BHMT   1430000 perm   1087 sec   (1316 perm/sec)   p_kst 5.599413e-01   p_cons 8.972028e-04   p_joint 1.629021e-02

Joint ci ratio: 2.518581e-02	ci left: 1.633604e-02	ci right 1.675341e-02	k: 23823	n:1440000
Cons ci ratio: 1.087978e-01	ci left: 8.516822e-04	ci right 9.503429e-04	k: 1296	n:1440000
KS ci ratio: 2.895955e-03	ci left: 5.591263e-01	ci right 5.607485e-01	k: 806310	n:1440000
BHMT   1440000 perm   1100 sec   (1309 perm/sec)   p_kst 5.599375e-01   p_cons 9.000000e-04   p_joint 1.654375e-02

Joint ci ratio: 2.462675e-02	ci left: 1.696226e-02	ci right 1.738587e-02	k: 24901	n:1450000
Cons ci ratio: 1.084639e-01	ci left: 8.511759e-04	ci right 9.494559e-04	k: 1304	n:1450000
KS ci ratio: 2.886184e-03	ci left: 5.590895e-01	ci right 5.607061e-01	k: 811852	n:1450000
BHMT   1450000 perm   1113 sec   (1303 perm/sec)   p_kst 5.598979e-01   p_cons 8.993103e-04   p_joint 1.717310e-02

Joint ci ratio: 2.500686e-02	ci left: 1.634504e-02	ci right 1.675962e-02	k: 24165	n:1460000
Cons ci ratio: 1.082155e-01	ci left: 8.493441e-04	ci right 9.471737e-04	k: 1310	n:1460000
KS ci ratio: 2.876334e-03	ci left: 5.590834e-01	ci right 5.606945e-01	k: 817438	n:1460000
BHMT   1460000 perm   1126 sec   (1296 perm/sec)   p_kst 5.598890e-01   p_cons 8.972603e-04   p_joint 1.655137e-02

Joint ci ratio: 2.479017e-02	ci left: 1.651780e-02	ci right 1.693309e-02	k: 24585	n:1470000
Cons ci ratio: 1.078869e-01	ci left: 8.488613e-04	ci right 9.463196e-04	k: 1318	n:1470000
KS ci ratio: 2.866617e-03	ci left: 5.590719e-01	ci right 5.606775e-01	k: 823016	n:1470000
BHMT   1470000 perm   1140 sec   (1290 perm/sec)   p_kst 5.598748e-01   p_cons 8.965986e-04   p_joint 1.672449e-02

Joint ci ratio: 2.492856e-02	ci left: 1.622822e-02	ci right 1.663854e-02	k: 24320	n:1480000
Cons ci ratio: 1.074397e-01	ci left: 8.503581e-04	ci right 9.475580e-04	k: 1329	n:1480000
KS ci ratio: 2.856974e-03	ci left: 5.590647e-01	ci right 5.606648e-01	k: 828600	n:1480000
BHMT   1480000 perm   1153 sec   (1284 perm/sec)   p_kst 5.598649e-01   p_cons 8.979730e-04   p_joint 1.643243e-02

Joint ci ratio: 2.415740e-02	ci left: 1.715529e-02	ci right 1.757545e-02	k: 25873	n:1490000
Cons ci ratio: 1.071582e-01	ci left: 8.492229e-04	ci right 9.460226e-04	k: 1336	n:1490000
KS ci ratio: 2.847156e-03	ci left: 5.591045e-01	ci right 5.606993e-01	k: 834254	n:1490000
BHMT   1490000 perm   1167 sec   (1277 perm/sec)   p_kst 5.599020e-01   p_cons 8.966443e-04   p_joint 1.736443e-02

Joint ci ratio: 2.475398e-02	ci left: 1.623976e-02	ci right 1.664745e-02	k: 24664	n:1500000
Cons ci ratio: 1.067596e-01	ci left: 8.500497e-04	ci right 9.465607e-04	k: 1346	n:1500000
KS ci ratio: 2.837427e-03	ci left: 5.591458e-01	ci right 5.607353e-01	k: 839911	n:1500000
BHMT   1500000 perm   1180 sec   (1271 perm/sec)   p_kst 5.599407e-01   p_cons 8.973333e-04   p_joint 1.644267e-02

Joint ci ratio: 2.467311e-02	ci left: 1.623883e-02	ci right 1.664515e-02	k: 24826	n:1510000
Cons ci ratio: 1.065622e-01	ci left: 8.476431e-04	ci right 9.436917e-04	k: 1351	n:1510000
KS ci ratio: 2.827922e-03	ci left: 5.591648e-01	ci right 5.607489e-01	k: 845535	n:1510000
BHMT   1510000 perm   1194 sec   (1265 perm/sec)   p_kst 5.599570e-01   p_cons 8.947020e-04   p_joint 1.644106e-02

Joint ci ratio: 2.458852e-02	ci left: 1.624380e-02	ci right 1.664883e-02	k: 24997	n:1520000
Cons ci ratio: 1.062093e-01	ci left: 8.478301e-04	ci right 9.435618e-04	k: 1360	n:1520000
KS ci ratio: 2.818374e-03	ci left: 5.592078e-01	ci right 5.607867e-01	k: 851196	n:1520000
BHMT   1520000 perm   1208 sec   (1258 perm/sec)   p_kst 5.599974e-01   p_cons 8.947368e-04   p_joint 1.644539e-02

Joint ci ratio: 2.459336e-02	ci left: 1.613308e-02	ci right 1.653542e-02	k: 24990	n:1530000
Cons ci ratio: 1.058598e-01	ci left: 8.480150e-04	ci right 9.434330e-04	k: 1369	n:1530000
KS ci ratio: 2.809077e-03	ci left: 5.592228e-01	ci right 5.607966e-01	k: 856815	n:1530000
BHMT   1530000 perm   1222 sec   (1252 perm/sec)   p_kst 5.600098e-01   p_cons 8.947712e-04   p_joint 1.633333e-02

Joint ci ratio: 2.451009e-02	ci left: 1.613803e-02	ci right 1.653912e-02	k: 25160	n:1540000
Cons ci ratio: 1.055138e-01	ci left: 8.481981e-04	ci right 9.433054e-04	k: 1378	n:1540000
KS ci ratio: 2.799883e-03	ci left: 5.592357e-01	ci right 5.608043e-01	k: 862431	n:1540000
BHMT   1540000 perm   1236 sec   (1246 perm/sec)   p_kst 5.600201e-01   p_cons 8.948052e-04   p_joint 1.633766e-02

Joint ci ratio: 2.445564e-02	ci left: 1.610637e-02	ci right 1.650577e-02	k: 25273	n:1550000
Cons ci ratio: 1.052851e-01	ci left: 8.464948e-04	ci right 9.411925e-04	k: 1384	n:1550000
KS ci ratio: 2.790856e-03	ci left: 5.592349e-01	ci right 5.607984e-01	k: 868026	n:1550000
BHMT   1550000 perm   1250 sec   (1240 perm/sec)   p_kst 5.600168e-01   p_cons 8.929032e-04   p_joint 1.630516e-02

Joint ci ratio: 2.438593e-02	ci left: 1.609550e-02	ci right 1.649348e-02	k: 25418	n:1560000
Cons ci ratio: 1.050201e-01	ci left: 8.454377e-04	ci right 9.397644e-04	k: 1391	n:1560000
KS ci ratio: 2.781868e-03	ci left: 5.592424e-01	ci right 5.608009e-01	k: 873634	n:1560000
BHMT   1560000 perm   1264 sec   (1234 perm/sec)   p_kst 5.600218e-01   p_cons 8.916667e-04   p_joint 1.629359e-02

Joint ci ratio: 2.418158e-02	ci left: 1.626332e-02	ci right 1.666203e-02	k: 25845	n:1570000
Cons ci ratio: 1.045330e-01	ci left: 8.481160e-04	ci right 9.422758e-04	k: 1404	n:1570000
KS ci ratio: 2.772866e-03	ci left: 5.592677e-01	ci right 5.608212e-01	k: 879270	n:1570000
BHMT   1570000 perm   1278 sec   (1228 perm/sec)   p_kst 5.600446e-01   p_cons 8.942675e-04   p_joint 1.646178e-02

Joint ci ratio: 2.424157e-02	ci left: 1.608299e-02	ci right 1.647828e-02	k: 25722	n:1580000
Cons ci ratio: 1.044218e-01	ci left: 8.445973e-04	ci right 9.382604e-04	k: 1407	n:1580000
KS ci ratio: 2.764289e-03	ci left: 5.592325e-01	ci right 5.607812e-01	k: 884811	n:1580000
BHMT   1580000 perm   1292 sec   (1222 perm/sec)   p_kst 5.600070e-01   p_cons 8.905063e-04   p_joint 1.627975e-02

Joint ci ratio: 2.416276e-02	ci left: 1.608686e-02	ci right 1.648094e-02	k: 25890	n:1590000
Cons ci ratio: 1.040896e-01	ci left: 8.447981e-04	ci right 9.381673e-04	k: 1416	n:1590000
KS ci ratio: 2.755523e-03	ci left: 5.592456e-01	ci right 5.607894e-01	k: 890428	n:1590000
BHMT   1590000 perm   1307 sec   (1217 perm/sec)   p_kst 5.600176e-01   p_cons 8.905660e-04   p_joint 1.628302e-02

Joint ci ratio: 2.408329e-02	ci left: 1.609255e-02	ci right 1.648545e-02	k: 26061	n:1600000
Cons ci ratio: 1.037971e-01	ci left: 8.443881e-04	ci right 9.374337e-04	k: 1424	n:1600000
KS ci ratio: 2.746616e-03	ci left: 5.592986e-01	ci right 5.608375e-01	k: 896109	n:1600000
BHMT   1600000 perm   1321 sec   (1211 perm/sec)   p_kst 5.600681e-01   p_cons 8.900000e-04   p_joint 1.628813e-02

Joint ci ratio: 2.427842e-02	ci left: 1.574068e-02	ci right 1.612814e-02	k: 25653	n:1610000
Cons ci ratio: 1.033627e-01	ci left: 8.464039e-04	ci right 9.392575e-04	k: 1436	n:1610000
KS ci ratio: 2.737869e-03	ci left: 5.593378e-01	ci right 5.608719e-01	k: 901769	n:1610000
BHMT   1610000 perm   1336 sec   (1205 perm/sec)   p_kst 5.601050e-01   p_cons 8.919255e-04   p_joint 1.593354e-02

Joint ci ratio: 2.420735e-02	ci left: 1.573616e-02	ci right 1.612236e-02	k: 25804	n:1620000
Cons ci ratio: 1.031476e-01	ci left: 8.447872e-04	ci right 9.372590e-04	k: 1442	n:1620000
KS ci ratio: 2.729484e-03	ci left: 5.593260e-01	ci right 5.608553e-01	k: 907347	n:1620000
BHMT   1620000 perm   1351 sec   (1199 perm/sec)   p_kst 5.600907e-01   p_cons 8.901235e-04   p_joint 1.592840e-02

Joint ci ratio: 2.406352e-02	ci left: 1.582683e-02	ci right 1.621292e-02	k: 26111	n:1630000
Cons ci ratio: 1.027920e-01	ci left: 8.455814e-04	ci right 9.378019e-04	k: 1452	n:1630000
KS ci ratio: 2.721027e-03	ci left: 5.593413e-01	ci right 5.608659e-01	k: 912969	n:1630000
BHMT   1630000 perm   1365 sec   (1194 perm/sec)   p_kst 5.601037e-01   p_cons 8.907975e-04   p_joint 1.601902e-02

Joint ci ratio: 2.405067e-02	ci left: 1.574850e-02	ci right 1.613248e-02	k: 26141	n:1640000
Cons ci ratio: 1.025454e-01	ci left: 8.445841e-04	ci right 9.364614e-04	k: 1459	n:1640000
KS ci ratio: 2.712722e-03	ci left: 5.593429e-01	ci right 5.608629e-01	k: 918569	n:1640000
BHMT   1640000 perm   1380 sec   (1188 perm/sec)   p_kst 5.601030e-01   p_cons 8.896341e-04   p_joint 1.593963e-02

Joint ci ratio: 2.367240e-02	ci left: 1.615373e-02	ci right 1.654130e-02	k: 26972	n:1650000
Cons ci ratio: 1.022308e-01	ci left: 8.447803e-04	ci right 9.363801e-04	k: 1468	n:1650000
KS ci ratio: 2.704383e-03	ci left: 5.593646e-01	ci right 5.608800e-01	k: 924202	n:1650000
BHMT   1650000 perm   1395 sec   (1183 perm/sec)   p_kst 5.601224e-01   p_cons 8.896970e-04   p_joint 1.634667e-02

Joint ci ratio: 2.360429e-02	ci left: 1.614984e-02	ci right 1.653619e-02	k: 27128	n:1660000
Cons ci ratio: 1.019536e-01	ci left: 8.443875e-04	ci right 9.356815e-04	k: 1476	n:1660000
KS ci ratio: 2.696028e-03	ci left: 5.594029e-01	ci right 5.609137e-01	k: 929863	n:1660000
BHMT   1660000 perm   1410 sec   (1177 perm/sec)   p_kst 5.601584e-01   p_cons 8.891566e-04   p_joint 1.634217e-02

Joint ci ratio: 2.354818e-02	ci left: 1.613052e-02	ci right 1.651547e-02	k: 27258	n:1670000
Cons ci ratio: 1.016786e-01	ci left: 8.439997e-04	ci right 9.349910e-04	k: 1484	n:1670000
KS ci ratio: 2.687985e-03	ci left: 5.593977e-01	ci right 5.609039e-01	k: 935452	n:1670000
BHMT   1670000 perm   1425 sec   (1172 perm/sec)   p_kst 5.601509e-01   p_cons 8.886228e-04   p_joint 1.632216e-02

Joint ci ratio: 2.368617e-02	ci left: 1.585163e-02	ci right 1.623218e-02	k: 26949	n:1680000
Cons ci ratio: 1.014398e-01	ci left: 8.430367e-04	ci right 9.336981e-04	k: 1491	n:1680000
KS ci ratio: 2.680030e-03	ci left: 5.593895e-01	ci right 5.608913e-01	k: 941036	n:1680000
BHMT   1680000 perm   1440 sec   (1167 perm/sec)   p_kst 5.601405e-01   p_cons 8.875000e-04   p_joint 1.604107e-02

Joint ci ratio: 2.340258e-02	ci left: 1.613963e-02	ci right 1.652239e-02	k: 27598	n:1690000
Cons ci ratio: 1.012028e-01	ci left: 8.420853e-04	ci right 9.324202e-04	k: 1498	n:1690000
KS ci ratio: 2.672145e-03	ci left: 5.593814e-01	ci right 5.608787e-01	k: 946620	n:1690000
BHMT   1690000 perm   1455 sec   (1162 perm/sec)   p_kst 5.601302e-01   p_cons 8.863905e-04   p_joint 1.633018e-02

Joint ci ratio: 2.322600e-02	ci left: 1.628857e-02	ci right 1.667191e-02	k: 28015	n:1700000
Cons ci ratio: 1.010345e-01	ci left: 8.399986e-04	ci right 9.299510e-04	k: 1503	n:1700000
KS ci ratio: 2.664431e-03	ci left: 5.593546e-01	ci right 5.608475e-01	k: 952172	n:1700000
BHMT   1700000 perm   1470 sec   (1156 perm/sec)   p_kst 5.601012e-01   p_cons 8.841176e-04   p_joint 1.647941e-02

Joint ci ratio: 2.347715e-02	ci left: 1.585374e-02	ci right 1.623094e-02	k: 27431	n:1710000
Cons ci ratio: 1.007336e-01	ci left: 8.402167e-04	ci right 9.299086e-04	k: 1512	n:1710000
KS ci ratio: 2.656689e-03	ci left: 5.593457e-01	ci right 5.608342e-01	k: 957754	n:1710000
BHMT   1710000 perm   1486 sec   (1151 perm/sec)   p_kst 5.600901e-01   p_cons 8.842105e-04   p_joint 1.604152e-02

Joint ci ratio: 2.317911e-02	ci left: 1.616678e-02	ci right 1.654648e-02	k: 28132	n:1720000
Cons ci ratio: 1.003693e-01	ci left: 8.415663e-04	ci right 9.310582e-04	k: 1523	n:1720000
KS ci ratio: 2.648948e-03	ci left: 5.593491e-01	ci right 5.608333e-01	k: 963357	n:1720000
BHMT   1720000 perm   1501 sec   (1146 perm/sec)   p_kst 5.600913e-01   p_cons 8.854651e-04   p_joint 1.635581e-02

Joint ci ratio: 2.302185e-02	ci left: 1.629288e-02	ci right 1.667291e-02	k: 28514	n:1730000
Cons ci ratio: 9.984635e-02	ci left: 8.457189e-04	ci right 9.351563e-04	k: 1539	n:1730000
KS ci ratio: 2.641315e-03	ci left: 5.593449e-01	ci right 5.608248e-01	k: 968947	n:1730000
BHMT   1730000 perm   1516 sec   (1141 perm/sec)   p_kst 5.600850e-01   p_cons 8.895954e-04   p_joint 1.648208e-02

Outputting figure to mutsig2_images.part000000000016/BHMT.6_1253_1730000_0.56008_0.0008896_0.016482.png
                gene_name: BHMT
               theta_stop: 0.100 
                    nperm: 1730000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.00089 
      ci_cons_bounds_left: 0.00085 
     ci_cons_bounds_right: 0.00094 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 31 percent done.
BICD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
KS ci ratio: 1.332298e-02	ci left: 8.903638e-01	ci right 9.024042e-01	k: 8965	n:10000
BICD1   10000 perm   2 sec   (5138 perm/sec)   p_kst 8.965000e-01   p_cons 8.114000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BICD1.6_2968_10000_0.8965_0.8114_1.png
                gene_name: BICD1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
BLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
Cons ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
KS ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
BLK   10000 perm   2 sec   (4578 perm/sec)   p_kst 5.123000e-01   p_cons 6.106000e-01   p_joint 6.911000e-01

Outputting figure to mutsig2_images.part000000000016/BLK.6_1566_10000_0.5123_0.6106_0.6911.png
                gene_name: BLK
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 35 percent done.
BMP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
Cons ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
KS ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
BMP10   10000 perm   2 sec   (5790 perm/sec)   p_kst 3.668000e-01   p_cons 5.221000e-01   p_joint 5.072000e-01

Outputting figure to mutsig2_images.part000000000016/BMP10.6_1283_10000_0.3668_0.5221_0.5072.png
                gene_name: BMP10
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
BMP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
Cons ci ratio: 2.271622e-02	ci left: 7.399757e-01	ci right 7.570793e-01	k: 7486	n:10000
KS ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
BMP15   10000 perm   2 sec   (5266 perm/sec)   p_kst 9.780000e-02   p_cons 7.486000e-01   p_joint 2.979000e-01

Joint ci ratio: 5.098994e-02	ci left: 2.222499e-01	ci right 2.339292e-01	k: 4561	n:20000
Cons ci ratio: 1.559352e-02	ci left: 7.536152e-01	ci right 7.655093e-01	k: 15192	n:20000
KS ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
BMP15   20000 perm   4 sec   (4794 perm/sec)   p_kst 9.950000e-02   p_cons 7.596000e-01   p_joint 2.280500e-01

Outputting figure to mutsig2_images.part000000000016/BMP15.6_1187_20000_0.0995_0.7596_0.22805.png
                gene_name: BMP15
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 40 percent done.
BEST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
BEST3   10000 perm   2 sec   (5502 perm/sec)   p_kst 5.511000e-01   p_cons 9.502000e-01   p_joint 7.525000e-01

Outputting figure to mutsig2_images.part000000000016/BEST3.5_2043_10000_0.5511_0.9502_0.7525.png
                gene_name: BEST3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 42 percent done.
BHLHB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
Cons ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KS ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
BHLHB9   10000 perm   2 sec   (5323 perm/sec)   p_kst 6.577000e-01   p_cons 2.872000e-01   p_joint 4.761000e-01

Outputting figure to mutsig2_images.part000000000016/BHLHB9.5_1648_10000_0.6577_0.2872_0.4761.png
                gene_name: BHLHB9
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 44 percent done.
BLM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
Cons ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
KS ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
BLM   10000 perm   2 sec   (4872 perm/sec)   p_kst 1.614000e-01   p_cons 1.957000e-01   p_joint 2.220000e-01

Outputting figure to mutsig2_images.part000000000016/BLM.5_4338_10000_0.1614_0.1957_0.222.png
                gene_name: BLM
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 46 percent done.
BMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
BMP1   10000 perm   2 sec   (4453 perm/sec)   p_kst 8.021000e-01   p_cons 2.449000e-01   p_joint 7.016000e-01

Outputting figure to mutsig2_images.part000000000016/BMP1.5_3131_10000_0.8021_0.2449_0.7016.png
                gene_name: BMP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 48 percent done.
BCL6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
Cons ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
KS ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
BCL6B   10000 perm   2 sec   (4449 perm/sec)   p_kst 1.784000e-01   p_cons 1.234000e-01   p_joint 9.090000e-02

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 7.504316e-02	ci left: 1.155268e-01	ci right 1.245840e-01	k: 2400	n:20000
KS ci ratio: 5.983092e-02	ci left: 1.713868e-01	ci right 1.820073e-01	k: 3533	n:20000
BCL6B   20000 perm   5 sec   (4231 perm/sec)   p_kst 1.766500e-01   p_cons 1.200000e-01   p_joint 9.105000e-02

Outputting figure to mutsig2_images.part000000000016/BCL6B.4_1472_20000_0.17665_0.12_0.09105.png
                gene_name: BCL6B
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 50 percent done.
BCMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
Cons ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
KS ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
BCMO1   10000 perm   2 sec   (5185 perm/sec)   p_kst 7.748000e-01   p_cons 4.060000e-02   p_joint 2.196000e-01

Joint ci ratio: 6.271874e-02	ci left: 1.582507e-01	ci right 1.685473e-01	k: 3267	n:20000
Cons ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
KS ci ratio: 1.524113e-02	ci left: 7.619350e-01	ci right 7.736871e-01	k: 15357	n:20000
BCMO1   20000 perm   4 sec   (4487 perm/sec)   p_kst 7.678500e-01   p_cons 3.920000e-02   p_joint 1.633500e-01

Joint ci ratio: 5.804389e-02	ci left: 1.281229e-01	ci right 1.358151e-01	k: 3958	n:30000
Cons ci ratio: 1.098281e-01	ci left: 3.849196e-02	ci right 4.299753e-02	k: 1221	n:30000
KS ci ratio: 1.246120e-02	ci left: 7.625432e-01	ci right 7.721383e-01	k: 23021	n:30000
BCMO1   30000 perm   7 sec   (4453 perm/sec)   p_kst 7.673667e-01   p_cons 4.070000e-02   p_joint 1.319333e-01

Joint ci ratio: 5.045867e-02	ci left: 1.277821e-01	ci right 1.344216e-01	k: 5243	n:40000
Cons ci ratio: 9.570777e-02	ci left: 3.832041e-02	ci right 4.219670e-02	k: 1609	n:40000
KS ci ratio: 1.075973e-02	ci left: 7.642592e-01	ci right 7.725518e-01	k: 30737	n:40000
BCMO1   40000 perm   9 sec   (4401 perm/sec)   p_kst 7.684250e-01   p_cons 4.022500e-02   p_joint 1.310750e-01

Outputting figure to mutsig2_images.part000000000016/BCMO1.4_1688_40000_0.76843_0.040225_0.13107.png
                gene_name: BCMO1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
BEND4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
Cons ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
BEND4   10000 perm   2 sec   (5955 perm/sec)   p_kst 1.617000e-01   p_cons 5.039000e-01   p_joint 2.505000e-01

Outputting figure to mutsig2_images.part000000000016/BEND4.4_1625_10000_0.1617_0.5039_0.2505.png
                gene_name: BEND4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 54 percent done.
BLID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
Cons ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
KS ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
BLID   10000 perm   1 sec   (6780 perm/sec)   p_kst 8.900000e-03   p_cons 8.468000e-01   p_joint 7.330000e-02

Joint ci ratio: 1.098571e-01	ci left: 5.655298e-02	ci right 6.317570e-02	k: 1196	n:20000
Cons ci ratio: 1.163344e-02	ci left: 8.452289e-01	ci right 8.551691e-01	k: 17005	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
BLID   20000 perm   3 sec   (5973 perm/sec)   p_kst 9.700000e-03   p_cons 8.502500e-01   p_joint 5.980000e-02

Joint ci ratio: 1.132532e-01	ci left: 3.622126e-02	ci right 4.060205e-02	k: 1151	n:30000
Cons ci ratio: 9.492875e-03	ci left: 8.463133e-01	ci right 8.544187e-01	k: 25512	n:30000
KS ci ratio: 2.218460e-01	ci left: 9.156946e-03	ci right 1.147270e-02	k: 308	n:30000
BLID   30000 perm   5 sec   (5635 perm/sec)   p_kst 1.026667e-02   p_cons 8.504000e-01   p_joint 3.836667e-02

Joint ci ratio: 9.340425e-02	ci left: 4.020171e-02	ci right 4.416510e-02	k: 1686	n:40000
Cons ci ratio: 9.016324e-03	ci left: 8.215933e-01	ci right 8.290595e-01	k: 33014	n:40000
KS ci ratio: 1.947694e-01	ci left: 9.048130e-03	ci right 1.102398e-02	k: 400	n:40000
BLID   40000 perm   7 sec   (5426 perm/sec)   p_kst 1.000000e-02   p_cons 8.253500e-01   p_joint 4.215000e-02

Joint ci ratio: 8.603907e-02	ci left: 3.814243e-02	ci right 4.159125e-02	k: 1992	n:50000
Cons ci ratio: 8.056862e-03	ci left: 8.222653e-01	ci right 8.289369e-01	k: 41281	n:50000
KS ci ratio: 1.703446e-01	ci left: 9.586755e-03	ci right 1.139076e-02	k: 523	n:50000
BLID   50000 perm   9 sec   (5266 perm/sec)   p_kst 1.046000e-02   p_cons 8.256200e-01   p_joint 3.984000e-02

Joint ci ratio: 7.967007e-02	ci left: 3.723608e-02	ci right 4.034207e-02	k: 2326	n:60000
Cons ci ratio: 6.743521e-03	ci left: 8.463282e-01	ci right 8.520713e-01	k: 50953	n:60000
KS ci ratio: 1.597687e-01	ci left: 9.139258e-03	ci right 1.074201e-02	k: 595	n:60000
BLID   60000 perm   12 sec   (5136 perm/sec)   p_kst 9.916667e-03   p_cons 8.492167e-01   p_joint 3.876667e-02

Joint ci ratio: 7.039908e-02	ci left: 4.091915e-02	ci right 4.391893e-02	k: 2968	n:70000
Cons ci ratio: 6.245069e-03	ci left: 8.464699e-01	ci right 8.517869e-01	k: 59440	n:70000
KS ci ratio: 1.477385e-01	ci left: 9.221087e-03	ci right 1.070567e-02	k: 696	n:70000
BLID   70000 perm   14 sec   (5018 perm/sec)   p_kst 9.942857e-03   p_cons 8.491429e-01   p_joint 4.240000e-02

Joint ci ratio: 7.210811e-02	ci left: 3.433892e-02	ci right 3.691990e-02	k: 2849	n:80000
Cons ci ratio: 5.834424e-03	ci left: 8.469656e-01	ci right 8.519340e-01	k: 67957	n:80000
KS ci ratio: 1.378974e-01	ci left: 9.310013e-03	ci right 1.070087e-02	k: 799	n:80000
BLID   80000 perm   16 sec   (4914 perm/sec)   p_kst 9.987500e-03   p_cons 8.494625e-01   p_joint 3.561250e-02

Joint ci ratio: 6.446197e-02	ci left: 3.819300e-02	ci right 4.074790e-02	k: 3551	n:90000
Cons ci ratio: 5.498259e-03	ci left: 8.472254e-01	ci right 8.519076e-01	k: 76462	n:90000
KS ci ratio: 1.287879e-01	ci left: 9.532306e-03	ci right 1.085511e-02	k: 916	n:90000
BLID   90000 perm   19 sec   (4814 perm/sec)   p_kst 1.017778e-02   p_cons 8.495778e-01   p_joint 3.945556e-02

Joint ci ratio: 6.006636e-02	ci left: 3.962164e-02	ci right 4.208508e-02	k: 4084	n:100000
Cons ci ratio: 5.219727e-03	ci left: 8.471681e-01	ci right 8.516116e-01	k: 84940	n:100000
KS ci ratio: 1.212145e-01	ci left: 9.722257e-03	ci right 1.098639e-02	k: 1034	n:100000
BLID   100000 perm   21 sec   (4722 perm/sec)   p_kst 1.034000e-02   p_cons 8.494000e-01   p_joint 4.084000e-02

Joint ci ratio: 5.626360e-02	ci left: 4.107327e-02	ci right 4.346003e-02	k: 4648	n:110000
Cons ci ratio: 4.981582e-03	ci left: 8.470258e-01	ci right 8.512649e-01	k: 93407	n:110000
KS ci ratio: 1.151400e-01	ci left: 9.826541e-03	ci right 1.103584e-02	k: 1146	n:110000
BLID   110000 perm   24 sec   (4627 perm/sec)   p_kst 1.041818e-02   p_cons 8.491545e-01   p_joint 4.225455e-02

Joint ci ratio: 5.416807e-02	ci left: 4.068281e-02	ci right 4.295607e-02	k: 5017	n:120000
Cons ci ratio: 4.775786e-03	ci left: 8.467772e-01	ci right 8.508392e-01	k: 101858	n:120000
KS ci ratio: 1.100727e-01	ci left: 9.882334e-03	ci right 1.104151e-02	k: 1254	n:120000
BLID   120000 perm   26 sec   (4539 perm/sec)   p_kst 1.045000e-02   p_cons 8.488167e-01   p_joint 4.180833e-02

Joint ci ratio: 5.148784e-02	ci left: 4.158453e-02	ci right 4.378977e-02	k: 5548	n:130000
Cons ci ratio: 4.586658e-03	ci left: 8.469570e-01	ci right 8.508582e-01	k: 110359	n:130000
KS ci ratio: 1.055422e-01	ci left: 9.945514e-03	ci right 1.106110e-02	k: 1364	n:130000
BLID   130000 perm   29 sec   (4456 perm/sec)   p_kst 1.049231e-02   p_cons 8.489154e-01   p_joint 4.267692e-02

Joint ci ratio: 4.954503e-02	ci left: 4.173860e-02	ci right 4.386610e-02	k: 5991	n:140000
Cons ci ratio: 4.799052e-03	ci left: 8.245706e-01	ci right 8.285444e-01	k: 115719	n:140000
KS ci ratio: 1.014939e-01	ci left: 1.000747e-02	ci right 1.108438e-02	k: 1475	n:140000
BLID   140000 perm   32 sec   (4378 perm/sec)   p_kst 1.053571e-02   p_cons 8.265643e-01   p_joint 4.279286e-02

Joint ci ratio: 4.785338e-02	ci left: 4.179440e-02	ci right 4.384999e-02	k: 6422	n:150000
Cons ci ratio: 4.639625e-03	ci left: 8.244334e-01	ci right 8.282740e-01	k: 123954	n:150000
KS ci ratio: 9.790951e-02	ci left: 1.005536e-02	ci right 1.109702e-02	k: 1585	n:150000
BLID   150000 perm   35 sec   (4298 perm/sec)   p_kst 1.056667e-02   p_cons 8.263600e-01   p_joint 4.281333e-02

Outputting figure to mutsig2_images.part000000000016/BLID.4_331_150000_0.010567_0.82636_0.042813.png
                gene_name: BLID
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 56 percent done.
BLMH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
KS ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
BLMH   10000 perm   2 sec   (5653 perm/sec)   p_kst 6.177000e-01   p_cons 5.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLMH.4_1416_10000_0.6177_0.5043_1.png
                gene_name: BLMH
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
BMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
Cons ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
KS ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
BMP4   10000 perm   2 sec   (6273 perm/sec)   p_kst 2.367000e-01   p_cons 2.148000e-01   p_joint 1.849000e-01

Outputting figure to mutsig2_images.part000000000016/BMP4.4_1235_10000_0.2367_0.2148_0.1849.png
                gene_name: BMP4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 60 percent done.
BMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
Cons ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
BMP5   10000 perm   2 sec   (5647 perm/sec)   p_kst 5.414000e-01   p_cons 2.081000e-01   p_joint 4.001000e-01

Outputting figure to mutsig2_images.part000000000016/BMP5.4_1393_10000_0.5414_0.2081_0.4001.png
                gene_name: BMP5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 62 percent done.
BCL7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
BCL7C   10000 perm   2 sec   (6623 perm/sec)   p_kst 8.400000e-03   p_cons 9.054000e-01   p_joint 1.196000e-01

Joint ci ratio: 8.331624e-02	ci left: 9.548311e-02	ci right 1.038337e-01	k: 1992	n:20000
Cons ci ratio: 8.787606e-03	ci left: 9.046235e-01	ci right 9.126573e-01	k: 18174	n:20000
KS ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
BCL7C   20000 perm   3 sec   (5721 perm/sec)   p_kst 8.100000e-03   p_cons 9.087000e-01   p_joint 9.960000e-02

Joint ci ratio: 9.509857e-02	ci left: 5.104544e-02	ci right 5.617477e-02	k: 1607	n:30000
Cons ci ratio: 7.142898e-03	ci left: 9.061293e-01	ci right 9.126578e-01	k: 27283	n:30000
KS ci ratio: 2.615209e-01	ci left: 6.461458e-03	ci right 8.435732e-03	k: 222	n:30000
BCL7C   30000 perm   5 sec   (5491 perm/sec)   p_kst 7.400000e-03   p_cons 9.094333e-01   p_joint 5.356667e-02

Joint ci ratio: 7.490790e-02	ci left: 6.166980e-02	ci right 6.649372e-02	k: 2562	n:40000
Cons ci ratio: 6.155044e-03	ci left: 9.074066e-01	ci right 9.130337e-01	k: 36410	n:40000
KS ci ratio: 2.217739e-01	ci left: 6.890396e-03	ci right 8.632207e-03	k: 309	n:40000
BCL7C   40000 perm   8 sec   (5319 perm/sec)   p_kst 7.725000e-03   p_cons 9.102500e-01   p_joint 6.405000e-02

Joint ci ratio: 7.534170e-02	ci left: 4.942169e-02	ci right 5.331060e-02	k: 2567	n:50000
Cons ci ratio: 5.528354e-03	ci left: 9.070122e-01	ci right 9.120601e-01	k: 45478	n:50000
KS ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
BCL7C   50000 perm   10 sec   (5162 perm/sec)   p_kst 7.480000e-03   p_cons 9.095600e-01   p_joint 5.134000e-02

Joint ci ratio: 8.269314e-02	ci left: 3.460521e-02	ci right 3.760654e-02	k: 2165	n:60000
Cons ci ratio: 5.041809e-03	ci left: 9.073953e-01	ci right 9.119983e-01	k: 54583	n:60000
KS ci ratio: 1.721602e-01	ci left: 7.828814e-03	ci right 9.319305e-03	k: 513	n:60000
BCL7C   60000 perm   12 sec   (5032 perm/sec)   p_kst 8.550000e-03   p_cons 9.097167e-01   p_joint 3.608333e-02

Joint ci ratio: 6.996949e-02	ci left: 4.141074e-02	ci right 4.442729e-02	k: 3003	n:70000
Cons ci ratio: 4.657277e-03	ci left: 9.079424e-01	ci right 9.121949e-01	k: 63706	n:70000
KS ci ratio: 1.592111e-01	ci left: 7.901818e-03	ci right 9.282237e-03	k: 600	n:70000
BCL7C   70000 perm   14 sec   (4911 perm/sec)   p_kst 8.571429e-03   p_cons 9.100857e-01   p_joint 4.290000e-02

Joint ci ratio: 6.585381e-02	ci left: 4.101407e-02	ci right 4.381924e-02	k: 3392	n:80000
Cons ci ratio: 4.345754e-03	ci left: 9.084881e-01	ci right 9.124571e-01	k: 72839	n:80000
KS ci ratio: 1.478314e-01	ci left: 8.068091e-03	ci right 9.367913e-03	k: 696	n:80000
BCL7C   80000 perm   17 sec   (4820 perm/sec)   p_kst 8.700000e-03   p_cons 9.104875e-01   p_joint 4.240000e-02

Joint ci ratio: 5.747549e-02	ci left: 4.773020e-02	ci right 5.056562e-02	k: 4422	n:90000
Cons ci ratio: 4.244611e-03	ci left: 9.026173e-01	ci right 9.064677e-01	k: 81410	n:90000
KS ci ratio: 1.394779e-01	ci left: 8.092873e-03	ci right 9.316886e-03	k: 782	n:90000
BCL7C   90000 perm   19 sec   (4732 perm/sec)   p_kst 8.688889e-03   p_cons 9.045556e-01   p_joint 4.913333e-02

Joint ci ratio: 5.767845e-02	ci left: 4.287514e-02	ci right 4.543138e-02	k: 4414	n:100000
Cons ci ratio: 4.025741e-03	ci left: 9.027625e-01	ci right 9.064140e-01	k: 90460	n:100000
KS ci ratio: 1.323204e-01	ci left: 8.124027e-03	ci right 9.284739e-03	k: 869	n:100000
BCL7C   100000 perm   22 sec   (4646 perm/sec)   p_kst 8.690000e-03   p_cons 9.046000e-01   p_joint 4.414000e-02

Joint ci ratio: 6.137038e-02	ci left: 3.466499e-02	ci right 3.686867e-02	k: 3933	n:110000
Cons ci ratio: 3.834945e-03	ci left: 9.030046e-01	ci right 9.064832e-01	k: 99523	n:110000
KS ci ratio: 1.300576e-01	ci left: 7.657927e-03	ci right 8.731882e-03	k: 900	n:110000
BCL7C   110000 perm   24 sec   (4560 perm/sec)   p_kst 8.181818e-03   p_cons 9.047545e-01   p_joint 3.575455e-02

Joint ci ratio: 5.911313e-02	ci left: 3.430405e-02	ci right 3.640182e-02	k: 4241	n:120000
Cons ci ratio: 3.667328e-03	ci left: 9.032851e-01	ci right 9.066120e-01	k: 108595	n:120000
KS ci ratio: 1.283207e-01	ci left: 7.221261e-03	ci right 8.219417e-03	k: 925	n:120000
BCL7C   120000 perm   27 sec   (4454 perm/sec)   p_kst 7.708333e-03   p_cons 9.049583e-01   p_joint 3.534167e-02

Joint ci ratio: 5.470268e-02	ci left: 3.695954e-02	ci right 3.904575e-02	k: 4939	n:130000
Cons ci ratio: 3.528107e-03	ci left: 9.031220e-01	ci right 9.063215e-01	k: 117615	n:130000
KS ci ratio: 1.225602e-01	ci left: 7.328943e-03	ci right 8.293206e-03	k: 1014	n:130000
BCL7C   130000 perm   30 sec   (4369 perm/sec)   p_kst 7.800000e-03   p_cons 9.047308e-01   p_joint 3.799231e-02

Joint ci ratio: 5.589785e-02	ci left: 3.298631e-02	ci right 3.489020e-02	k: 4750	n:140000
Cons ci ratio: 3.407829e-03	ci left: 9.027686e-01	ci right 9.058574e-01	k: 126605	n:140000
KS ci ratio: 1.176191e-01	ci left: 7.408230e-03	ci right 8.340897e-03	k: 1101	n:140000
BCL7C   140000 perm   33 sec   (4287 perm/sec)   p_kst 7.864286e-03   p_cons 9.043214e-01   p_joint 3.392857e-02

Joint ci ratio: 5.109809e-02	ci left: 3.678781e-02	ci right 3.872344e-02	k: 5662	n:150000
Cons ci ratio: 3.289126e-03	ci left: 9.029881e-01	ci right 9.059696e-01	k: 135673	n:150000
KS ci ratio: 1.141540e-01	ci left: 7.354529e-03	ci right 8.251320e-03	k: 1169	n:150000
BCL7C   150000 perm   36 sec   (4215 perm/sec)   p_kst 7.793333e-03   p_cons 9.044867e-01   p_joint 3.774667e-02

Joint ci ratio: 5.210278e-02	ci left: 3.327777e-02	ci right 3.506416e-02	k: 5466	n:160000
Cons ci ratio: 3.178324e-03	ci left: 9.033829e-01	ci right 9.062649e-01	k: 144773	n:160000
KS ci ratio: 1.109782e-01	ci left: 7.307896e-03	ci right 8.172585e-03	k: 1237	n:160000
BCL7C   160000 perm   39 sec   (4144 perm/sec)   p_kst 7.731250e-03   p_cons 9.048312e-01   p_joint 3.416250e-02

Joint ci ratio: 4.598782e-02	ci left: 4.004485e-02	ci right 4.193555e-02	k: 6967	n:170000
Cons ci ratio: 3.081876e-03	ci left: 9.035134e-01	ci right 9.063080e-01	k: 153836	n:170000
KS ci ratio: 1.074744e-01	ci left: 7.347203e-03	ci right 8.187361e-03	k: 1319	n:170000
BCL7C   170000 perm   42 sec   (4077 perm/sec)   p_kst 7.758824e-03   p_cons 9.049176e-01   p_joint 4.098235e-02

Joint ci ratio: 4.983364e-02	ci left: 3.240454e-02	ci right 3.406610e-02	k: 5981	n:180000
Cons ci ratio: 2.995543e-03	ci left: 9.035243e-01	ci right 9.062404e-01	k: 162880	n:180000
KS ci ratio: 1.044708e-01	ci left: 7.355467e-03	ci right 8.171618e-03	k: 1396	n:180000
BCL7C   180000 perm   45 sec   (4012 perm/sec)   p_kst 7.755556e-03   p_cons 9.048889e-01   p_joint 3.322778e-02

Joint ci ratio: 4.684302e-02	ci left: 3.471407e-02	ci right 3.638435e-02	k: 6753	n:190000
Cons ci ratio: 2.916704e-03	ci left: 9.034980e-01	ci right 9.061423e-01	k: 171917	n:190000
KS ci ratio: 1.016709e-01	ci left: 7.368283e-03	ci right 8.162635e-03	k: 1474	n:190000
BCL7C   190000 perm   48 sec   (3946 perm/sec)   p_kst 7.757895e-03   p_cons 9.048263e-01   p_joint 3.554211e-02

Joint ci ratio: 4.655194e-02	ci left: 3.344236e-02	ci right 3.504118e-02	k: 6847	n:200000
Cons ci ratio: 2.843696e-03	ci left: 9.034802e-01	ci right 9.060580e-01	k: 180955	n:200000
KS ci ratio: 9.876472e-02	ci left: 7.428852e-03	ci right 8.205515e-03	k: 1562	n:200000
BCL7C   200000 perm   51 sec   (3886 perm/sec)   p_kst 7.810000e-03   p_cons 9.047750e-01   p_joint 3.423500e-02

Outputting figure to mutsig2_images.part000000000016/BCL7C.3_678_200000_0.00781_0.90477_0.034235.png
                gene_name: BCL7C
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.0078 
        ci_ks_bounds_left: 0.0074 
       ci_ks_bounds_right: 0.0082 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 65 percent done.
BCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
BCR   10000 perm   2 sec   (5065 perm/sec)   p_kst 3.563000e-01   p_cons 7.899000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000016/BCR.3_3908_10000_0.3563_0.7899_0.445.png
                gene_name: BCR
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 67 percent done.
BEND6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
Cons ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
KS ci ratio: 1.280331e-01	ci left: 8.018782e-02	ci right 9.125491e-02	k: 856	n:10000
BEND6   10000 perm   2 sec   (6350 perm/sec)   p_kst 8.560000e-02   p_cons 3.056000e-01   p_joint 2.069000e-01

Joint ci ratio: 4.921721e-02	ci left: 2.348377e-01	ci right 2.467377e-01	k: 4815	n:20000
Cons ci ratio: 4.129089e-02	ci left: 3.041898e-01	ci right 3.170653e-01	k: 6212	n:20000
KS ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
BEND6   20000 perm   4 sec   (5571 perm/sec)   p_kst 8.795000e-02   p_cons 3.106000e-01   p_joint 2.407500e-01

Outputting figure to mutsig2_images.part000000000016/BEND6.3_860_20000_0.08795_0.3106_0.24075.png
                gene_name: BEND6
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 69 percent done.
BEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
Cons ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
KS ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
BEX1   10000 perm   2 sec   (6505 perm/sec)   p_kst 5.900000e-01   p_cons 6.377000e-01   p_joint 6.710000e-01

Outputting figure to mutsig2_images.part000000000016/BEX1.3_382_10000_0.59_0.6377_0.671.png
                gene_name: BEX1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 71 percent done.
BIRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
Cons ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
KS ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
BIRC3   10000 perm   2 sec   (5712 perm/sec)   p_kst 5.230000e-02   p_cons 7.334000e-01   p_joint 1.497000e-01

Joint ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
Cons ci ratio: 1.673747e-02	ci left: 7.266089e-01	ci right 7.389234e-01	k: 14656	n:20000
KS ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
BIRC3   20000 perm   4 sec   (5093 perm/sec)   p_kst 5.300000e-02   p_cons 7.328000e-01   p_joint 1.114000e-01

Joint ci ratio: 5.931025e-02	ci left: 1.233175e-01	ci right 1.308882e-01	k: 3812	n:30000
Cons ci ratio: 1.365104e-02	ci left: 7.281896e-01	ci right 7.382319e-01	k: 21997	n:30000
KS ci ratio: 9.466392e-02	ci left: 5.150162e-02	ci right 5.665183e-02	k: 1621	n:30000
BIRC3   30000 perm   6 sec   (4861 perm/sec)   p_kst 5.403333e-02   p_cons 7.332333e-01   p_joint 1.270667e-01

Outputting figure to mutsig2_images.part000000000016/BIRC3.3_1847_30000_0.054033_0.73323_0.12707.png
                gene_name: BIRC3
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 73 percent done.
BMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
BMP3   10000 perm   2 sec   (5734 perm/sec)   p_kst 5.087000e-01   p_cons 3.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BMP3.3_1431_10000_0.5087_0.3949_1.png
                gene_name: BMP3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
BCL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
Cons ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
KS ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
BCL6   10000 perm   2 sec   (6209 perm/sec)   p_kst 4.465000e-01   p_cons 9.690000e-02   p_joint 6.651000e-01

Joint ci ratio: 1.867641e-02	ci left: 6.812756e-01	ci right 6.941698e-01	k: 13755	n:20000
Cons ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
KS ci ratio: 3.064144e-02	ci left: 4.430879e-01	ci right 4.569266e-01	k: 9000	n:20000
BCL6   20000 perm   4 sec   (5493 perm/sec)   p_kst 4.500000e-01   p_cons 7.050000e-02   p_joint 6.877500e-01

Joint ci ratio: 1.595255e-02	ci left: 6.627052e-01	ci right 6.733956e-01	k: 20042	n:30000
Cons ci ratio: 7.015212e-02	ci left: 9.095011e-02	ci right 9.759537e-02	k: 2827	n:30000
KS ci ratio: 2.501260e-02	ci left: 4.444920e-01	ci right 4.557843e-01	k: 13504	n:30000
BCL6   30000 perm   6 sec   (5102 perm/sec)   p_kst 4.501333e-01   p_cons 9.423333e-02   p_joint 6.680667e-01

Outputting figure to mutsig2_images.part000000000016/BCL6.2_2153_30000_0.45013_0.094233_0.66807.png
                gene_name: BCL6
               theta_stop: 0.070 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 77 percent done.
BCL7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 4.945085e-02	ci left: 3.762436e-01	ci right 3.954229e-01	k: 3858	n:10000
KS ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
BCL7B   10000 perm   1 sec   (6809 perm/sec)   p_kst 8.406000e-01   p_cons 3.858000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000016/BCL7B.2_633_10000_0.8406_0.3858_0.8406.png
                gene_name: BCL7B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 79 percent done.
BEGAIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
KS ci ratio: 1.936779e-02	ci left: 7.958786e-01	ci right 8.115441e-01	k: 8038	n:10000
BEGAIN   10000 perm   2 sec   (6159 perm/sec)   p_kst 8.038000e-01   p_cons 6.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEGAIN.2_1806_10000_0.8038_0.6133_1.png
                gene_name: BEGAIN
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
BEND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
KS ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
BEND3   10000 perm   2 sec   (5796 perm/sec)   p_kst 7.520000e-01   p_cons 8.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEND3.2_2499_10000_0.752_0.824_1.png
                gene_name: BEND3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
BEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
Cons ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KS ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
BEX2   10000 perm   1 sec   (6851 perm/sec)   p_kst 1.986000e-01   p_cons 3.400000e-02   p_joint 7.080000e-02

Joint ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
Cons ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
KS ci ratio: 5.529827e-02	ci left: 1.952174e-01	ci right 2.063697e-01	k: 4015	n:20000
BEX2   20000 perm   3 sec   (6040 perm/sec)   p_kst 2.007500e-01   p_cons 3.275000e-02   p_joint 3.895000e-02

Joint ci ratio: 1.850737e-01	ci left: 1.336863e-02	ci right 1.612652e-02	k: 441	n:30000
Cons ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
KS ci ratio: 4.485773e-02	ci left: 1.983284e-01	ci right 2.074625e-01	k: 6086	n:30000
BEX2   30000 perm   5 sec   (5734 perm/sec)   p_kst 2.028667e-01   p_cons 3.266667e-02   p_joint 1.470000e-02

Joint ci ratio: 1.601873e-01	ci left: 1.356744e-02	ci right 1.595376e-02	k: 589	n:40000
Cons ci ratio: 1.063482e-01	ci left: 3.110037e-02	ci right 3.461788e-02	k: 1313	n:40000
KS ci ratio: 3.891720e-02	ci left: 1.983725e-01	ci right 2.062708e-01	k: 8092	n:40000
BEX2   40000 perm   7 sec   (5536 perm/sec)   p_kst 2.023000e-01   p_cons 3.282500e-02   p_joint 1.472500e-02

Joint ci ratio: 1.518072e-01	ci left: 1.216021e-02	ci right 1.417690e-02	k: 657	n:50000
Cons ci ratio: 9.466012e-02	ci left: 3.158816e-02	ci right 3.474635e-02	k: 1657	n:50000
KS ci ratio: 3.480919e-02	ci left: 1.987862e-01	ci right 2.058484e-01	k: 10115	n:50000
BEX2   50000 perm   9 sec   (5368 perm/sec)   p_kst 2.023000e-01   p_cons 3.314000e-02   p_joint 1.314000e-02

Joint ci ratio: 1.390812e-01	ci left: 1.215720e-02	ci right 1.399035e-02	k: 783	n:60000
Cons ci ratio: 8.674233e-02	ci left: 3.148703e-02	ci right 3.435839e-02	k: 1974	n:60000
KS ci ratio: 3.180950e-02	ci left: 1.987605e-01	ci right 2.052017e-01	k: 12118	n:60000
BEX2   60000 perm   11 sec   (5230 perm/sec)   p_kst 2.019667e-01   p_cons 3.290000e-02   p_joint 1.305000e-02

Joint ci ratio: 1.363398e-01	ci left: 1.087514e-02	ci right 1.248000e-02	k: 816	n:70000
Cons ci ratio: 8.023889e-02	ci left: 3.164688e-02	ci right 3.430630e-02	k: 2307	n:70000
KS ci ratio: 2.941579e-02	ci left: 1.993720e-01	ci right 2.053384e-01	k: 14164	n:70000
BEX2   70000 perm   14 sec   (5101 perm/sec)   p_kst 2.023429e-01   p_cons 3.295714e-02   p_joint 1.165714e-02

Joint ci ratio: 1.277918e-01	ci left: 1.088162e-02	ci right 1.237911e-02	k: 929	n:80000
Cons ci ratio: 7.499370e-02	ci left: 3.178512e-02	ci right 3.427390e-02	k: 2641	n:80000
KS ci ratio: 2.751444e-02	ci left: 1.995831e-01	ci right 2.051635e-01	k: 16189	n:80000
BEX2   80000 perm   16 sec   (4987 perm/sec)   p_kst 2.023625e-01   p_cons 3.301250e-02   p_joint 1.161250e-02

Joint ci ratio: 1.129770e-01	ci left: 1.245373e-02	ci right 1.395567e-02	k: 1187	n:90000
Cons ci ratio: 7.043869e-02	ci left: 3.209364e-02	ci right 3.444768e-02	k: 2993	n:90000
KS ci ratio: 2.588898e-02	ci left: 2.003872e-01	ci right 2.056541e-01	k: 18271	n:90000
BEX2   90000 perm   18 sec   (4883 perm/sec)   p_kst 2.030111e-01   p_cons 3.325556e-02   p_joint 1.318889e-02

Joint ci ratio: 1.078857e-01	ci left: 1.232655e-02	ci right 1.374190e-02	k: 1302	n:100000
Cons ci ratio: 6.723983e-02	ci left: 3.176366e-02	ci right 3.398355e-02	k: 3286	n:100000
KS ci ratio: 2.458797e-02	ci left: 2.001622e-01	ci right 2.051550e-01	k: 20265	n:100000
BEX2   100000 perm   21 sec   (4793 perm/sec)   p_kst 2.026500e-01   p_cons 3.286000e-02   p_joint 1.302000e-02

Joint ci ratio: 8.800276e-02	ci left: 1.693786e-02	ci right 1.850589e-02	k: 1948	n:110000
Cons ci ratio: 6.417219e-02	ci left: 3.175523e-02	ci right 3.386950e-02	k: 3608	n:110000
KS ci ratio: 2.343884e-02	ci left: 2.003457e-01	ci right 2.051063e-01	k: 22299	n:110000
BEX2   110000 perm   23 sec   (4692 perm/sec)   p_kst 2.027182e-01   p_cons 3.280000e-02   p_joint 1.770909e-02

Outputting figure to mutsig2_images.part000000000016/BEX2.2_495_110000_0.20272_0.0328_0.017709.png
                gene_name: BEX2
               theta_stop: 0.088 
                    nperm: 110000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 85 percent done.
BFSP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
KS ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
BFSP2   10000 perm   2 sec   (6326 perm/sec)   p_kst 9.341000e-01   p_cons 5.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BFSP2.2_1276_10000_0.9341_0.599_1.png
                gene_name: BFSP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
BGLAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
BGLAP   10000 perm   1 sec   (7032 perm/sec)   p_kst 9.620000e-01   p_cons 6.233000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BGLAP.2_319_10000_0.962_0.6233_1.png
                gene_name: BGLAP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
BHLHE40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
Cons ci ratio: 6.832654e-03	ci left: 9.670990e-01	ci right 9.738232e-01	k: 9706	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
BHLHE40   10000 perm   2 sec   (6404 perm/sec)   p_kst 1.194000e-01   p_cons 9.706000e-01   p_joint 3.598000e-01

Joint ci ratio: 3.953606e-02	ci left: 3.229860e-01	ci right 3.360636e-01	k: 6590	n:20000
Cons ci ratio: 4.781158e-03	ci left: 9.687356e-01	ci right 9.734261e-01	k: 19423	n:20000
KS ci ratio: 7.609137e-02	ci left: 1.126747e-01	ci right 1.216370e-01	k: 2342	n:20000
BHLHE40   20000 perm   4 sec   (5689 perm/sec)   p_kst 1.171000e-01   p_cons 9.711500e-01   p_joint 3.295000e-01

Outputting figure to mutsig2_images.part000000000016/BHLHE40.2_1259_20000_0.1171_0.97115_0.3295.png
                gene_name: BHLHE40
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 92 percent done.
BICD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
BICD2   10000 perm   2 sec   (5804 perm/sec)   p_kst 3.013000e-01   p_cons 8.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BICD2.2_2606_10000_0.3013_0.883_1.png
                gene_name: BICD2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
BIRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327990e-02	ci left: 8.909790e-01	ci right 9.029887e-01	k: 8971	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
BIRC2   10000 perm   2 sec   (6401 perm/sec)   p_kst 2.831000e-01   p_cons 4.117000e-01   p_joint 8.971000e-01

Outputting figure to mutsig2_images.part000000000016/BIRC2.2_1889_10000_0.2831_0.4117_0.8971.png
                gene_name: BIRC2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
BLOC1S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
BLOC1S2   10000 perm   1 sec   (7067 perm/sec)   p_kst 2.724000e-01   p_cons 6.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLOC1S2.2_449_10000_0.2724_0.6352_1.png
                gene_name: BLOC1S2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BMI1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000016
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 16 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 4421743: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000017> was used as the working directory.
Started at Wed Oct 24 17:31:17 2012
Results reported at Wed Oct 24 17:47:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000017.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000017.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 17  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000017.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    922.34 sec.
    Max Memory :      5276 MB
    Max Swap   :      7645 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
17
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 17
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 17: processing genes 1449 - 1538
Calculating significance of each gene.
Using projection method.
1449	BMP6	5.830475e-01
1450	BMP7	1
1451	BMP8A	6.868995e-01
1452	BMP8B	1
1453	BMPER	8.944846e-01
1454	BMPR1A	1
1455	BMPR1B	6.756845e-01
1456	BMPR2	1
1457	BMS1	2.085239e-01
1458	BMX	7.635001e-01
1459	BNC1	9.467725e-01
1460	BNC2	6.105749e-01
1461	BNIP1	1
1462	BNIP2	1
1463	BNIP3	1
1464	BNIP3L	1
1465	BNIPL	9.128733e-01
1466	BOC	9.985719e-01
1467	BOD1	1
1468	BOD1L	1
1469	BOK	1
1470	BOLA1	2.390368e-01
1471	BOLA3	1
1472	BOLL	4.884993e-01
1473	BPGM	2.933671e-01
1474	BPHL	8.887501e-02
1475	BPI	5.067706e-02
1476	BPIL1	1
1477	BPIL2	1.519235e-01
1478	BPIL3	1.242947e-01
1479	BPNT1	1
1480	BPTF	9.907855e-01
1481	BRAF	5.988828e-07
1482	BRAP	9.802712e-01
1483	BRCA1	7.430607e-01
1484	BRCA2	9.999585e-01
1485	BRCC3	2.461643e-01
1486	BRD1	9.983076e-01
1487	BRD2	9.517489e-01
1488	BRD3	1
1489	BRD4	7.471518e-01
1490	BRD7	9.427257e-01
1491	BRD8	1
In gene BRD9 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 1346    n = 1	mu =   9.71e-07
1492	BRD9	8.341805e-01
1493	BRDT	1
1494	BRE	2.162589e-01
1495	BRF1	4.202855e-01
1496	BRF2	8.390382e-01
1497	BRI3	1
1498	BRI3BP	5.998056e-01
1499	BRIP1	2.495184e-01
1500	BRIX1	6.191568e-01
1501	BRMS1	7.402451e-01
1502	BRMS1L	1
1503	BRP44	1
1504	BRP44L	2.085022e-01
1505	BRPF1	1
1506	BRPF3	9.824795e-01
1507	BRS3	6.068130e-03
1508	BRSK1	1
1509	BRSK2	5.501650e-01
1510	BRWD1	9.915646e-01
1511	BRWD3	9.786912e-01
1512	BSCL2	7.007613e-01
1513	BSDC1	7.491804e-01
1514	BSG	8.286053e-01
1515	BSN	1.000000e+00
1516	BSND	6.165428e-01
1517	BSPRY	1
1518	BST1	1
1519	BST2	1
1520	BSX	2.823059e-01
1521	BTAF1	3.609085e-01
1522	BTBD1	9.230755e-01
1523	BTBD10	1
1524	BTBD11	2.408608e-01
1525	BTBD12	9.999343e-01
1526	BTBD16	6.951962e-01
1527	BTBD17	5.681197e-01
1528	BTBD2	8.921535e-01
1529	BTBD3	5.279566e-01
1530	BTBD6	8.054847e-01
1531	BTBD7	9.968598e-01
1532	BTBD8	3.614724e-01
1533	BTBD9	9.838396e-01
1534	BTC	2.392662e-01
1535	BTD	2.973076e-01
1536	BTF3	4.045916e-01
1537	BTF3L4	1
1538	BTG1	7.183587e-01
Done

Running MutSig 2:
Scatter job 17: processing genes 1449 - 1538
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BOD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
Cons ci ratio: 6.632113e-02	ci left: 2.502371e-01	ci right 2.675036e-01	k: 2588	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
BOD1L   10000 perm   3 sec   (3366 perm/sec)   p_kst 2.621000e-01   p_cons 2.588000e-01   p_joint 2.238000e-01

Outputting figure to mutsig2_images.part000000000017/BOD1L.23_9260_10000_0.2621_0.2588_0.2238.png
                gene_name: BOD1L
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
BRAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
Cons ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
BRAF   10000 perm   2 sec   (4698 perm/sec)   p_kst 8.800000e-03   p_cons 1.728000e-01   p_joint 1.970000e-02

Joint ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
Cons ci ratio: 6.055015e-02	ci left: 1.679782e-01	ci right 1.785169e-01	k: 3464	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
BRAF   20000 perm   5 sec   (4243 perm/sec)   p_kst 8.850000e-03   p_cons 1.732000e-01   p_joint 1.385000e-02

Joint ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
Cons ci ratio: 5.237674e-02	ci left: 1.531967e-01	ci right 1.614697e-01	k: 4719	n:30000
KS ci ratio: 2.357281e-01	ci left: 8.056540e-03	ci right 1.024011e-02	k: 273	n:30000
BRAF   30000 perm   7 sec   (4086 perm/sec)   p_kst 9.100000e-03   p_cons 1.573000e-01   p_joint 1.986667e-02

Joint ci ratio: 1.500535e-01	ci left: 1.551503e-02	ci right 1.805582e-02	k: 670	n:40000
Cons ci ratio: 4.593416e-02	ci left: 1.504755e-01	ci right 1.575748e-01	k: 6160	n:40000
KS ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
BRAF   40000 perm   10 sec   (3977 perm/sec)   p_kst 1.005000e-02   p_cons 1.540000e-01   p_joint 1.675000e-02

Joint ci ratio: 1.420592e-01	ci left: 1.393349e-02	ci right 1.608335e-02	k: 749	n:50000
Cons ci ratio: 4.110454e-02	ci left: 1.507274e-01	ci right 1.570729e-01	k: 7694	n:50000
KS ci ratio: 1.763978e-01	ci left: 8.916851e-03	ci right 1.066077e-02	k: 488	n:50000
BRAF   50000 perm   13 sec   (3891 perm/sec)   p_kst 9.760000e-03   p_cons 1.538800e-01   p_joint 1.498000e-02

Joint ci ratio: 1.535167e-01	ci left: 9.924221e-03	ci right 1.159028e-02	k: 644	n:60000
Cons ci ratio: 3.754962e-02	ci left: 1.508226e-01	ci right 1.566109e-01	k: 9222	n:60000
KS ci ratio: 1.597687e-01	ci left: 9.139258e-03	ci right 1.074201e-02	k: 595	n:60000
BRAF   60000 perm   16 sec   (3818 perm/sec)   p_kst 9.916667e-03   p_cons 1.537000e-01   p_joint 1.073333e-02

Joint ci ratio: 1.298230e-01	ci left: 1.202184e-02	ci right 1.370461e-02	k: 899	n:70000
Cons ci ratio: 3.470738e-02	ci left: 1.514610e-01	ci right 1.568249e-01	k: 10789	n:70000
KS ci ratio: 1.480607e-01	ci left: 9.179802e-03	ci right 1.066125e-02	k: 693	n:70000
BRAF   70000 perm   19 sec   (3757 perm/sec)   p_kst 9.900000e-03   p_cons 1.541286e-01   p_joint 1.284286e-02

Joint ci ratio: 1.378104e-01	ci left: 9.322086e-03	ci right 1.071379e-02	k: 800	n:80000
Cons ci ratio: 3.244159e-02	ci left: 1.518280e-01	ci right 1.568471e-01	k: 12346	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
BRAF   80000 perm   22 sec   (3704 perm/sec)   p_kst 9.787500e-03   p_cons 1.543250e-01   p_joint 1.000000e-02

Joint ci ratio: 1.031646e-01	ci left: 1.497372e-02	ci right 1.661326e-02	k: 1420	n:90000
Cons ci ratio: 3.052309e-02	ci left: 1.525087e-01	ci right 1.572469e-01	k: 13938	n:90000
KS ci ratio: 1.306726e-01	ci left: 9.252707e-03	ci right 1.055695e-02	k: 890	n:90000
BRAF   90000 perm   25 sec   (3642 perm/sec)   p_kst 9.888889e-03   p_cons 1.548667e-01   p_joint 1.577778e-02

Joint ci ratio: 8.895286e-02	ci left: 1.820192e-02	ci right 1.990613e-02	k: 1904	n:100000
Cons ci ratio: 2.886175e-02	ci left: 1.534876e-01	ci right 1.579924e-01	k: 15573	n:100000
KS ci ratio: 1.252511e-01	ci left: 9.092105e-03	ci right 1.031659e-02	k: 969	n:100000
BRAF   100000 perm   28 sec   (3591 perm/sec)   p_kst 9.690000e-03   p_cons 1.557300e-01   p_joint 1.904000e-02

Joint ci ratio: 9.391607e-02	ci left: 1.485817e-02	ci right 1.633117e-02	k: 1714	n:110000
Cons ci ratio: 2.749143e-02	ci left: 1.538512e-01	ci right 1.581488e-01	k: 17159	n:110000
KS ci ratio: 1.202213e-01	ci left: 8.996906e-03	ci right 1.015644e-02	k: 1052	n:110000
BRAF   110000 perm   31 sec   (3541 perm/sec)   p_kst 9.563636e-03   p_cons 1.559909e-01   p_joint 1.558182e-02

Joint ci ratio: 7.991146e-02	ci left: 1.887217e-02	ci right 2.045117e-02	k: 2358	n:120000
Cons ci ratio: 2.632605e-02	ci left: 1.538931e-01	ci right 1.580068e-01	k: 18713	n:120000
KS ci ratio: 1.190776e-01	ci left: 8.416775e-03	ci right 9.490491e-03	k: 1073	n:120000
BRAF   120000 perm   34 sec   (3488 perm/sec)   p_kst 8.941667e-03   p_cons 1.559417e-01   p_joint 1.965000e-02

Joint ci ratio: 7.992135e-02	ci left: 1.744256e-02	ci right 1.890212e-02	k: 2361	n:130000
Cons ci ratio: 2.528402e-02	ci left: 1.540696e-01	ci right 1.580226e-01	k: 20285	n:130000
KS ci ratio: 1.150312e-01	ci left: 8.344279e-03	ci right 9.370117e-03	k: 1150	n:130000
BRAF   130000 perm   38 sec   (3440 perm/sec)   p_kst 8.846154e-03   p_cons 1.560385e-01   p_joint 1.816154e-02

Joint ci ratio: 7.577492e-02	ci left: 1.804589e-02	ci right 1.947414e-02	k: 2625	n:140000
Cons ci ratio: 2.437518e-02	ci left: 1.540247e-01	ci right 1.578324e-01	k: 21829	n:140000
KS ci ratio: 1.106910e-01	ci left: 8.386864e-03	ci right 9.376495e-03	k: 1242	n:140000
BRAF   140000 perm   41 sec   (3394 perm/sec)   p_kst 8.871429e-03   p_cons 1.559214e-01   p_joint 1.875000e-02

Joint ci ratio: 7.527077e-02	ci left: 1.709106e-02	ci right 1.843434e-02	k: 2663	n:150000
Cons ci ratio: 2.353751e-02	ci left: 1.542135e-01	ci right 1.578931e-01	k: 23407	n:150000
KS ci ratio: 1.070507e-01	ci left: 8.385462e-03	ci right 9.340335e-03	k: 1328	n:150000
BRAF   150000 perm   45 sec   (3350 perm/sec)   p_kst 8.853333e-03   p_cons 1.560467e-01   p_joint 1.775333e-02

Joint ci ratio: 7.312465e-02	ci left: 1.699815e-02	ci right 1.829441e-02	k: 2822	n:160000
Cons ci ratio: 2.281421e-02	ci left: 1.539950e-01	ci right 1.575550e-01	k: 24923	n:160000
KS ci ratio: 1.040446e-01	ci left: 8.335990e-03	ci right 9.256942e-03	k: 1406	n:160000
BRAF   160000 perm   48 sec   (3309 perm/sec)   p_kst 8.787500e-03   p_cons 1.557688e-01   p_joint 1.763750e-02

Joint ci ratio: 6.871761e-02	ci left: 1.813652e-02	ci right 1.943291e-02	k: 3192	n:170000
Cons ci ratio: 2.211956e-02	ci left: 1.542078e-01	ci right 1.576628e-01	k: 26508	n:170000
KS ci ratio: 1.009360e-01	ci left: 8.350019e-03	ci right 9.243324e-03	k: 1494	n:170000
BRAF   170000 perm   52 sec   (3267 perm/sec)   p_kst 8.788235e-03   p_cons 1.559294e-01   p_joint 1.877647e-02

Joint ci ratio: 6.803107e-02	ci left: 1.749459e-02	ci right 1.873211e-02	k: 3259	n:180000
Cons ci ratio: 2.150559e-02	ci left: 1.541440e-01	ci right 1.575005e-01	k: 28047	n:180000
KS ci ratio: 9.774830e-02	ci left: 8.422480e-03	ci right 9.293449e-03	k: 1593	n:180000
BRAF   180000 perm   56 sec   (3213 perm/sec)   p_kst 8.850000e-03   p_cons 1.558167e-01   p_joint 1.810556e-02

Outputting figure to mutsig2_images.part000000000017/BRAF.17_2373_180000_0.00885_0.15582_0.018106.png
                gene_name: BRAF
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 4 percent done.
BRCA2
Processing conservation and coverage...
96% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
BRCA2   10000 perm   3 sec   (2879 perm/sec)   p_kst 7.118000e-01   p_cons 5.433000e-01   p_joint 7.513000e-01

Outputting figure to mutsig2_images.part000000000017/BRCA2.16_10361_10000_0.7118_0.5433_0.7513.png
                gene_name: BRCA2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 5 percent done.
BTBD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
BTBD11   10000 perm   2 sec   (4213 perm/sec)   p_kst 2.040000e-01   p_cons 3.739000e-01   p_joint 4.687000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD11.15_3488_10000_0.204_0.3739_0.4687.png
                gene_name: BTBD11
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 7 percent done.
BMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
BMS1   10000 perm   2 sec   (4330 perm/sec)   p_kst 5.660000e-02   p_cons 9.180000e-01   p_joint 1.344000e-01

Joint ci ratio: 7.421998e-02	ci left: 1.178387e-01	ci right 1.269714e-01	k: 2447	n:20000
Cons ci ratio: 8.274988e-03	ci left: 9.143157e-01	ci right 9.219622e-01	k: 18364	n:20000
KS ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
BMS1   20000 perm   5 sec   (4077 perm/sec)   p_kst 5.305000e-02   p_cons 9.182000e-01   p_joint 1.223500e-01

Joint ci ratio: 6.298959e-02	ci left: 1.107204e-01	ci right 1.179545e-01	k: 3429	n:30000
Cons ci ratio: 6.718506e-03	ci left: 9.158891e-01	ci right 9.220961e-01	k: 27571	n:30000
KS ci ratio: 9.420431e-02	ci left: 5.199044e-02	ci right 5.716291e-02	k: 1636	n:30000
BMS1   30000 perm   8 sec   (3971 perm/sec)   p_kst 5.453333e-02   p_cons 9.190333e-01   p_joint 1.143000e-01

Outputting figure to mutsig2_images.part000000000017/BMS1.13_3937_30000_0.054533_0.91903_0.1143.png
                gene_name: BMS1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 9 percent done.
BRWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
KS ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
BRWD3   10000 perm   3 sec   (3875 perm/sec)   p_kst 7.482000e-01   p_cons 7.236000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000017/BRWD3.13_5573_10000_0.7482_0.7236_0.8605.png
                gene_name: BRWD3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
BSN
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
BSN   10000 perm   3 sec   (3106 perm/sec)   p_kst 3.692000e-01   p_cons 2.120000e-02   p_joint 9.210000e-02

Joint ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
Cons ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
KS ci ratio: 3.667918e-02	ci left: 3.567791e-01	ci right 3.701606e-01	k: 7269	n:20000
BSN   20000 perm   7 sec   (2913 perm/sec)   p_kst 3.634500e-01   p_cons 2.035000e-02   p_joint 7.975000e-02

Joint ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
Cons ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
KS ci ratio: 2.995486e-02	ci left: 3.579209e-01	ci right 3.688389e-01	k: 10901	n:30000
BSN   30000 perm   11 sec   (2838 perm/sec)   p_kst 3.633667e-01   p_cons 1.883333e-02   p_joint 4.550000e-02

Joint ci ratio: 8.655540e-02	ci left: 4.665998e-02	ci right 5.090583e-02	k: 1950	n:40000
Cons ci ratio: 1.400846e-01	ci left: 1.785355e-02	ci right 2.056689e-02	k: 767	n:40000
KS ci ratio: 2.601611e-02	ci left: 3.573379e-01	ci right 3.667821e-01	k: 14482	n:40000
BSN   40000 perm   14 sec   (2790 perm/sec)   p_kst 3.620500e-01   p_cons 1.917500e-02   p_joint 4.875000e-02

Joint ci ratio: 8.681322e-02	ci left: 3.747656e-02	ci right 4.089720e-02	k: 1958	n:50000
Cons ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
KS ci ratio: 2.295227e-02	ci left: 3.641896e-01	ci right 3.726657e-01	k: 18421	n:50000
BSN   50000 perm   18 sec   (2716 perm/sec)   p_kst 3.684200e-01   p_cons 1.864000e-02   p_joint 3.916000e-02

Joint ci ratio: 8.107591e-02	ci left: 3.597757e-02	ci right 3.903404e-02	k: 2249	n:60000
Cons ci ratio: 1.173205e-01	ci left: 1.719398e-02	ci right 1.935298e-02	k: 1095	n:60000
KS ci ratio: 2.090931e-02	ci left: 3.655196e-01	ci right 3.732597e-01	k: 22163	n:60000
BSN   60000 perm   22 sec   (2687 perm/sec)   p_kst 3.693833e-01   p_cons 1.825000e-02   p_joint 3.748333e-02

Joint ci ratio: 6.304218e-02	ci left: 5.069034e-02	ci right 5.400403e-02	k: 3663	n:70000
Cons ci ratio: 1.086900e-01	ci left: 1.725042e-02	ci right 1.924694e-02	k: 1276	n:70000
KS ci ratio: 1.931263e-02	ci left: 3.669064e-01	ci right 3.740757e-01	k: 25934	n:70000
BSN   70000 perm   26 sec   (2660 perm/sec)   p_kst 3.704857e-01   p_cons 1.822857e-02   p_joint 5.232857e-02

Joint ci ratio: 6.000150e-02	ci left: 4.912823e-02	ci right 5.217947e-02	k: 4051	n:80000
Cons ci ratio: 1.024027e-01	ci left: 1.706560e-02	ci right 1.891959e-02	k: 1438	n:80000
KS ci ratio: 1.803774e-02	ci left: 3.678506e-01	ci right 3.745587e-01	k: 29696	n:80000
BSN   80000 perm   30 sec   (2627 perm/sec)   p_kst 3.712000e-01   p_cons 1.797500e-02   p_joint 5.063750e-02

Joint ci ratio: 5.773681e-02	ci left: 4.731376e-02	ci right 5.013764e-02	k: 4384	n:90000
Cons ci ratio: 9.844826e-02	ci left: 1.645818e-02	ci right 1.817313e-02	k: 1557	n:90000
KS ci ratio: 1.706708e-02	ci left: 3.663786e-01	ci right 3.726965e-01	k: 33258	n:90000
BSN   90000 perm   35 sec   (2592 perm/sec)   p_kst 3.695333e-01   p_cons 1.730000e-02   p_joint 4.871111e-02

Outputting figure to mutsig2_images.part000000000017/BSN.13_11821_90000_0.36953_0.0173_0.048711.png
                gene_name: BSN
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 12 percent done.
BTAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
BTAF1   10000 perm   2 sec   (4014 perm/sec)   p_kst 5.967000e-01   p_cons 4.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTAF1.13_5702_10000_0.5967_0.477_1.png
                gene_name: BTAF1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
BMPER
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
KS ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
BMPER   10000 perm   2 sec   (5474 perm/sec)   p_kst 7.766000e-01   p_cons 7.096000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMPER.9_2118_10000_0.7766_0.7096_1.png
                gene_name: BMPER
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
BNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
Cons ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
BNC2   10000 perm   2 sec   (4988 perm/sec)   p_kst 3.405000e-01   p_cons 1.706000e-01   p_joint 3.310000e-01

Outputting figure to mutsig2_images.part000000000017/BNC2.10_3328_10000_0.3405_0.1706_0.331.png
                gene_name: BNC2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 18 percent done.
BOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
BOC   10000 perm   2 sec   (4944 perm/sec)   p_kst 5.706000e-01   p_cons 2.458000e-01   p_joint 4.503000e-01

Outputting figure to mutsig2_images.part000000000017/BOC.10_3417_10000_0.5706_0.2458_0.4503.png
                gene_name: BOC
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 19 percent done.
BPTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
Cons ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KS ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
BPTF   10000 perm   3 sec   (3673 perm/sec)   p_kst 2.767000e-01   p_cons 2.675000e-01   p_joint 5.248000e-01

Outputting figure to mutsig2_images.part000000000017/BPTF.9_9261_10000_0.2767_0.2675_0.5248.png
                gene_name: BPTF
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 21 percent done.
BRCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
KS ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
BRCA1   10000 perm   2 sec   (4248 perm/sec)   p_kst 9.691000e-01   p_cons 5.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRCA1.9_5750_10000_0.9691_0.5849_1.png
                gene_name: BRCA1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
BRDT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
Cons ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
BRDT   10000 perm   2 sec   (5217 perm/sec)   p_kst 5.099000e-01   p_cons 7.201000e-01   p_joint 6.355000e-01

Outputting figure to mutsig2_images.part000000000017/BRDT.9_2916_10000_0.5099_0.7201_0.6355.png
                gene_name: BRDT
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 25 percent done.
BNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
KS ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
BNC1   10000 perm   2 sec   (5204 perm/sec)   p_kst 1.640000e-02   p_cons 4.172000e-01   p_joint 5.100000e-02

Joint ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
Cons ci ratio: 3.293725e-02	ci left: 4.077103e-01	ci right 4.214146e-01	k: 8291	n:20000
KS ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
BNC1   20000 perm   4 sec   (4662 perm/sec)   p_kst 1.620000e-02   p_cons 4.145500e-01   p_joint 4.800000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 2.614448e-02	ci left: 4.227243e-01	ci right 4.339562e-01	k: 12850	n:30000
KS ci ratio: 1.780490e-01	ci left: 1.448301e-02	ci right 1.734519e-02	k: 476	n:30000
BNC1   30000 perm   7 sec   (4461 perm/sec)   p_kst 1.586667e-02   p_cons 4.283333e-01   p_joint 4.466667e-02

Joint ci ratio: 1.057670e-01	ci left: 3.144137e-02	ci right 3.497682e-02	k: 1327	n:40000
Cons ci ratio: 2.267374e-02	ci left: 4.227946e-01	ci right 4.325159e-01	k: 17106	n:40000
KS ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
BNC1   40000 perm   9 sec   (4339 perm/sec)   p_kst 1.527500e-02   p_cons 4.276500e-01   p_joint 3.317500e-02

Joint ci ratio: 1.026489e-01	ci left: 2.688341e-02	ci right 2.981169e-02	k: 1416	n:50000
Cons ci ratio: 2.024006e-02	ci left: 4.242765e-01	ci right 4.329718e-01	k: 21431	n:50000
KS ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
BNC1   50000 perm   12 sec   (4240 perm/sec)   p_kst 1.528000e-02   p_cons 4.286200e-01   p_joint 2.832000e-02

Joint ci ratio: 9.110250e-02	ci left: 2.856799e-02	ci right 3.131106e-02	k: 1795	n:60000
Cons ci ratio: 1.843348e-02	ci left: 4.258007e-01	ci right 4.337394e-01	k: 25786	n:60000
KS ci ratio: 1.284557e-01	ci left: 1.430075e-02	ci right 1.627987e-02	k: 916	n:60000
BNC1   60000 perm   14 sec   (4152 perm/sec)   p_kst 1.526667e-02   p_cons 4.297667e-01   p_joint 2.991667e-02

Joint ci ratio: 8.474851e-02	ci left: 2.839885e-02	ci right 3.092605e-02	k: 2075	n:70000
Cons ci ratio: 1.732770e-02	ci left: 4.186657e-01	ci right 4.259979e-01	k: 29563	n:70000
KS ci ratio: 1.180799e-01	ci left: 1.458400e-02	ci right 1.642790e-02	k: 1084	n:70000
BNC1   70000 perm   17 sec   (4073 perm/sec)   p_kst 1.548571e-02   p_cons 4.223286e-01   p_joint 2.964286e-02

Joint ci ratio: 7.026261e-02	ci left: 3.613261e-02	ci right 3.877607e-02	k: 2995	n:80000
Cons ci ratio: 1.620460e-02	ci left: 4.190238e-01	ci right 4.258818e-01	k: 33796	n:80000
KS ci ratio: 1.107718e-01	ci left: 1.455807e-02	ci right 1.627733e-02	k: 1232	n:80000
BNC1   80000 perm   20 sec   (4002 perm/sec)   p_kst 1.540000e-02   p_cons 4.224500e-01   p_joint 3.743750e-02

Joint ci ratio: 6.755120e-02	ci left: 3.484700e-02	ci right 3.729414e-02	k: 3245	n:90000
Cons ci ratio: 1.530697e-02	ci left: 4.182931e-01	ci right 4.247564e-01	k: 37937	n:90000
KS ci ratio: 1.044797e-01	ci left: 1.459478e-02	ci right 1.621445e-02	k: 1385	n:90000
BNC1   90000 perm   23 sec   (3937 perm/sec)   p_kst 1.538889e-02   p_cons 4.215222e-01   p_joint 3.605556e-02

Joint ci ratio: 6.681019e-02	ci left: 3.216701e-02	ci right 3.440017e-02	k: 3327	n:100000
Cons ci ratio: 1.451650e-02	ci left: 4.186266e-01	ci right 4.247580e-01	k: 42169	n:100000
KS ci ratio: 9.895520e-02	ci left: 1.468490e-02	ci right 1.622339e-02	k: 1544	n:100000
BNC1   100000 perm   26 sec   (3877 perm/sec)   p_kst 1.544000e-02   p_cons 4.216900e-01   p_joint 3.327000e-02

Outputting figure to mutsig2_images.part000000000017/BNC1.8_3005_100000_0.01544_0.42169_0.03327.png
                gene_name: BNC1
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 26 percent done.
BPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.290415e-02	ci left: 5.768742e-01	ci right 5.962753e-01	k: 5866	n:10000
Cons ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
KS ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
BPI   10000 perm   2 sec   (5900 perm/sec)   p_kst 9.204000e-01   p_cons 2.132000e-01   p_joint 5.866000e-01

Outputting figure to mutsig2_images.part000000000017/BPI.8_1524_10000_0.9204_0.2132_0.5866.png
                gene_name: BPI
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 28 percent done.
BRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
BRIP1   10000 perm   2 sec   (4423 perm/sec)   p_kst 9.249000e-01   p_cons 8.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRIP1.8_3826_10000_0.9249_0.8438_1.png
                gene_name: BRIP1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
BRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
Cons ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
KS ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
BRS3   10000 perm   2 sec   (5372 perm/sec)   p_kst 4.305000e-01   p_cons 5.490000e-02   p_joint 2.247000e-01

Joint ci ratio: 4.558878e-02	ci left: 2.637070e-01	ci right 2.760599e-01	k: 5397	n:20000
Cons ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
KS ci ratio: 3.225803e-02	ci left: 4.178359e-01	ci right 4.315860e-01	k: 8494	n:20000
BRS3   20000 perm   4 sec   (4838 perm/sec)   p_kst 4.247000e-01   p_cons 4.780000e-02   p_joint 2.698500e-01

Joint ci ratio: 4.903747e-02	ci left: 1.712764e-01	ci right 1.799198e-01	k: 5267	n:30000
Cons ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
KS ci ratio: 2.570616e-02	ci left: 4.310107e-01	ci right 4.422682e-01	k: 13099	n:30000
BRS3   30000 perm   8 sec   (3719 perm/sec)   p_kst 4.366333e-01   p_cons 4.626667e-02   p_joint 1.755667e-01

Joint ci ratio: 4.825759e-02	ci left: 1.381723e-01	ci right 1.450299e-01	k: 5663	n:40000
Cons ci ratio: 8.870341e-02	ci left: 4.448145e-02	ci right 4.863470e-02	k: 1861	n:40000
KS ci ratio: 2.221431e-02	ci left: 4.328304e-01	ci right 4.425786e-01	k: 17508	n:40000
BRS3   40000 perm   11 sec   (3567 perm/sec)   p_kst 4.377000e-01   p_cons 4.652500e-02   p_joint 1.415750e-01

Outputting figure to mutsig2_images.part000000000017/BRS3.8_1212_40000_0.4377_0.046525_0.14158.png
                gene_name: BRS3
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
BRD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
Cons ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
KS ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
BRD4   10000 perm   2 sec   (4518 perm/sec)   p_kst 2.580000e-01   p_cons 2.581000e-01   p_joint 3.439000e-01

Outputting figure to mutsig2_images.part000000000017/BRD4.6_4180_10000_0.258_0.2581_0.3439.png
                gene_name: BRD4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
BRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
Cons ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
BRE   10000 perm   2 sec   (4921 perm/sec)   p_kst 6.850000e-02   p_cons 6.500000e-03   p_joint 3.600000e-03

Joint ci ratio: 2.114054e-01	ci left: 1.511171e-02	ci right 1.873069e-02	k: 337	n:20000
Cons ci ratio: 3.136318e-01	ci left: 6.535562e-03	ci right 9.010769e-03	k: 154	n:20000
KS ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
BRE   20000 perm   4 sec   (4598 perm/sec)   p_kst 6.775000e-02   p_cons 7.700000e-03   p_joint 1.685000e-02

Joint ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
Cons ci ratio: 2.473828e-01	ci left: 7.273253e-03	ci right 9.356987e-03	k: 248	n:30000
KS ci ratio: 8.447700e-02	ci left: 6.413080e-02	ci right 6.982008e-02	k: 2008	n:30000
BRE   30000 perm   7 sec   (4433 perm/sec)   p_kst 6.693333e-02   p_cons 8.266667e-03   p_joint 2.196667e-02

Joint ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
Cons ci ratio: 2.152233e-01	ci left: 7.339583e-03	ci right 9.132911e-03	k: 328	n:40000
KS ci ratio: 7.209315e-02	ci left: 6.633840e-02	ci right 7.132442e-02	k: 2752	n:40000
BRE   40000 perm   9 sec   (4325 perm/sec)   p_kst 6.880000e-02   p_cons 8.200000e-03   p_joint 2.297500e-02

Joint ci ratio: 1.404518e-01	ci left: 1.426164e-02	ci right 1.643515e-02	k: 766	n:50000
Cons ci ratio: 1.969573e-01	ci left: 7.085623e-03	ci right 8.652325e-03	k: 392	n:50000
KS ci ratio: 6.359606e-02	ci left: 6.836971e-02	ci right 7.288029e-02	k: 3530	n:50000
BRE   50000 perm   12 sec   (4232 perm/sec)   p_kst 7.060000e-02   p_cons 7.840000e-03   p_joint 1.532000e-02

Joint ci ratio: 1.293903e-01	ci left: 1.409098e-02	ci right 1.605634e-02	k: 903	n:60000
Cons ci ratio: 1.808825e-01	ci left: 7.063887e-03	ci right 8.484346e-03	k: 465	n:60000
KS ci ratio: 5.748918e-02	ci left: 6.984544e-02	ci right 7.399608e-02	k: 4314	n:60000
BRE   60000 perm   14 sec   (4152 perm/sec)   p_kst 7.190000e-02   p_cons 7.750000e-03   p_joint 1.505000e-02

Joint ci ratio: 1.165083e-01	ci left: 1.498631e-02	ci right 1.685413e-02	k: 1113	n:70000
Cons ci ratio: 1.694659e-01	ci left: 6.942612e-03	ci right 8.241563e-03	k: 530	n:70000
KS ci ratio: 5.342027e-02	ci left: 6.951727e-02	ci right 7.334692e-02	k: 4999	n:70000
BRE   70000 perm   17 sec   (4079 perm/sec)   p_kst 7.141429e-02   p_cons 7.571429e-03   p_joint 1.590000e-02

Joint ci ratio: 1.143571e-01	ci left: 1.364660e-02	ci right 1.531389e-02	k: 1157	n:80000
Cons ci ratio: 1.560596e-01	ci left: 7.214060e-03	ci right 8.447034e-03	k: 625	n:80000
KS ci ratio: 4.988222e-02	ci left: 6.987213e-02	ci right 7.345901e-02	k: 5732	n:80000
BRE   80000 perm   20 sec   (4014 perm/sec)   p_kst 7.165000e-02   p_cons 7.812500e-03   p_joint 1.446250e-02

Joint ci ratio: 1.143504e-01	ci left: 1.215135e-02	ci right 1.363585e-02	k: 1159	n:90000
Cons ci ratio: 1.487666e-01	ci left: 7.085775e-03	ci right 8.235188e-03	k: 688	n:90000
KS ci ratio: 4.720161e-02	ci left: 6.949524e-02	ci right 7.286579e-02	k: 6405	n:90000
BRE   90000 perm   23 sec   (3953 perm/sec)   p_kst 7.116667e-02   p_cons 7.644444e-03   p_joint 1.287778e-02

Joint ci ratio: 1.168439e-01	ci left: 1.047927e-02	ci right 1.178932e-02	k: 1112	n:100000
Cons ci ratio: 1.408135e-01	ci left: 7.148247e-03	ci right 8.240599e-03	k: 768	n:100000
KS ci ratio: 4.470432e-02	ci left: 6.980163e-02	ci right 7.300328e-02	k: 7139	n:100000
BRE   100000 perm   26 sec   (3894 perm/sec)   p_kst 7.139000e-02   p_cons 7.680000e-03   p_joint 1.112000e-02

Joint ci ratio: 1.116510e-01	ci left: 1.046271e-02	ci right 1.170872e-02	k: 1218	n:110000
Cons ci ratio: 1.348968e-01	ci left: 7.104038e-03	ci right 8.140357e-03	k: 837	n:110000
KS ci ratio: 4.267660e-02	ci left: 6.971409e-02	ci right 7.276310e-02	k: 7835	n:110000
BRE   110000 perm   29 sec   (3836 perm/sec)   p_kst 7.122727e-02   p_cons 7.609091e-03   p_joint 1.107273e-02

Joint ci ratio: 1.104289e-01	ci left: 9.817488e-03	ci right 1.097302e-02	k: 1246	n:120000
Cons ci ratio: 1.286712e-01	ci left: 7.180924e-03	ci right 8.176423e-03	k: 920	n:120000
KS ci ratio: 4.243739e-02	ci left: 6.497286e-02	ci right 6.779814e-02	k: 7965	n:120000
BRE   120000 perm   32 sec   (3781 perm/sec)   p_kst 6.637500e-02   p_cons 7.666667e-03   p_joint 1.038333e-02

Joint ci ratio: 9.942781e-02	ci left: 1.122756e-02	ci right 1.240975e-02	k: 1535	n:130000
Cons ci ratio: 1.233589e-01	ci left: 7.231997e-03	ci right 8.190158e-03	k: 1001	n:130000
KS ci ratio: 4.081519e-02	ci left: 6.490000e-02	ci right 6.761169e-02	k: 8612	n:130000
BRE   130000 perm   35 sec   (3726 perm/sec)   p_kst 6.624615e-02   p_cons 7.700000e-03   p_joint 1.180769e-02

Joint ci ratio: 9.737651e-02	ci left: 1.088533e-02	ci right 1.200647e-02	k: 1601	n:140000
Cons ci ratio: 1.182152e-01	ci left: 7.331959e-03	ci right 8.260029e-03	k: 1090	n:140000
KS ci ratio: 3.930678e-02	ci left: 6.502335e-02	ci right 6.763750e-02	k: 9285	n:140000
BRE   140000 perm   38 sec   (3673 perm/sec)   p_kst 6.632143e-02   p_cons 7.785714e-03   p_joint 1.143571e-02

Joint ci ratio: 1.031660e-01	ci left: 9.041252e-03	ci right 1.003118e-02	k: 1429	n:150000
Cons ci ratio: 1.153018e-01	ci left: 7.205565e-03	ci right 8.093626e-03	k: 1146	n:150000
KS ci ratio: 3.806889e-02	ci left: 6.476182e-02	ci right 6.728165e-02	k: 9902	n:150000
BRE   150000 perm   41 sec   (3623 perm/sec)   p_kst 6.601333e-02   p_cons 7.640000e-03   p_joint 9.526667e-03

Joint ci ratio: 1.048750e-01	ci left: 8.202053e-03	ci right 9.115885e-03	k: 1384	n:160000
Cons ci ratio: 1.118002e-01	ci left: 7.198508e-03	ci right 8.056979e-03	k: 1219	n:160000
KS ci ratio: 3.688286e-02	ci left: 6.472622e-02	ci right 6.716453e-02	k: 10550	n:160000
BRE   160000 perm   45 sec   (3575 perm/sec)   p_kst 6.593750e-02   p_cons 7.618750e-03   p_joint 8.650000e-03

Joint ci ratio: 9.568325e-02	ci left: 9.308446e-03	ci right 1.024956e-02	k: 1661	n:170000
Cons ci ratio: 1.080534e-01	ci left: 7.267054e-03	ci right 8.102808e-03	k: 1305	n:170000
KS ci ratio: 3.577043e-02	ci left: 6.480090e-02	ci right 6.716687e-02	k: 11216	n:170000
BRE   170000 perm   48 sec   (3529 perm/sec)   p_kst 6.597647e-02   p_cons 7.676471e-03   p_joint 9.770588e-03

Joint ci ratio: 9.493424e-02	ci left: 8.937653e-03	ci right 9.833810e-03	k: 1688	n:180000
Cons ci ratio: 1.050789e-01	ci left: 7.268891e-03	ci right 8.080420e-03	k: 1380	n:180000
KS ci ratio: 3.481257e-02	ci left: 6.465885e-02	ci right 6.695515e-02	k: 11844	n:180000
BRE   180000 perm   52 sec   (3478 perm/sec)   p_kst 6.580000e-02   p_cons 7.666667e-03   p_joint 9.377778e-03

Joint ci ratio: 9.492956e-02	ci left: 8.472292e-03	ci right 9.321741e-03	k: 1689	n:190000
Cons ci ratio: 1.024792e-01	ci left: 7.250299e-03	ci right 8.038519e-03	k: 1451	n:190000
KS ci ratio: 3.387111e-02	ci left: 6.473618e-02	ci right 6.697183e-02	k: 12511	n:190000
BRE   190000 perm   55 sec   (3432 perm/sec)   p_kst 6.584737e-02   p_cons 7.636842e-03   p_joint 8.889474e-03

Joint ci ratio: 8.277184e-02	ci left: 1.063074e-02	ci right 1.155352e-02	k: 2217	n:200000
Cons ci ratio: 1.084931e-01	ci left: 6.133019e-03	ci right 6.841399e-03	k: 1296	n:200000
KS ci ratio: 3.299675e-02	ci left: 6.482636e-02	ci right 6.700624e-02	k: 13182	n:200000
BRE   200000 perm   59 sec   (3386 perm/sec)   p_kst 6.591000e-02   p_cons 6.480000e-03   p_joint 1.108500e-02

Joint ci ratio: 8.387066e-02	ci left: 9.863236e-03	ci right 1.073131e-02	k: 2161	n:210000
Cons ci ratio: 1.061081e-01	ci left: 6.114380e-03	ci right 6.804111e-03	k: 1355	n:210000
KS ci ratio: 3.215946e-02	ci left: 6.501261e-02	ci right 6.714225e-02	k: 13875	n:210000
BRE   210000 perm   63 sec   (3342 perm/sec)   p_kst 6.607143e-02   p_cons 6.452381e-03   p_joint 1.029048e-02

Joint ci ratio: 7.947845e-02	ci left: 1.050149e-02	ci right 1.137510e-02	k: 2405	n:220000
Cons ci ratio: 1.032513e-01	ci left: 6.172874e-03	ci right 6.849318e-03	k: 1431	n:220000
KS ci ratio: 3.140591e-02	ci left: 6.509231e-02	ci right 6.717369e-02	k: 14548	n:220000
BRE   220000 perm   67 sec   (3300 perm/sec)   p_kst 6.612727e-02   p_cons 6.504545e-03   p_joint 1.093182e-02

Joint ci ratio: 6.621646e-02	ci left: 1.451146e-02	ci right 1.550951e-02	k: 3451	n:230000
Cons ci ratio: 1.005464e-01	ci left: 6.234986e-03	ci right 6.899280e-03	k: 1509	n:230000
KS ci ratio: 3.070945e-02	ci left: 6.513970e-02	ci right 6.717559e-02	k: 15215	n:230000
BRE   230000 perm   71 sec   (3259 perm/sec)   p_kst 6.615217e-02   p_cons 6.560870e-03   p_joint 1.500435e-02

Joint ci ratio: 6.394559e-02	ci left: 1.492343e-02	ci right 1.591332e-02	k: 3699	n:240000
Cons ci ratio: 9.889327e-02	ci left: 6.182386e-03	ci right 6.829618e-03	k: 1560	n:240000
KS ci ratio: 3.007358e-02	ci left: 6.511742e-02	ci right 6.710974e-02	k: 15866	n:240000
BRE   240000 perm   75 sec   (3218 perm/sec)   p_kst 6.610833e-02   p_cons 6.500000e-03   p_joint 1.541250e-02

Outputting figure to mutsig2_images.part000000000017/BRE.6_1407_240000_0.066108_0.0065_0.015413.png
                gene_name: BRE
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.0065 
      ci_cons_bounds_left: 0.0062 
     ci_cons_bounds_right: 0.0068 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 35 percent done.
BTBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
Cons ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
KS ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
BTBD3   10000 perm   2 sec   (5364 perm/sec)   p_kst 6.572000e-01   p_cons 7.012000e-01   p_joint 8.219000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD3.6_1585_10000_0.6572_0.7012_0.8219.png
                gene_name: BTBD3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 37 percent done.
BMPR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
BMPR1B   10000 perm   2 sec   (5687 perm/sec)   p_kst 9.621000e-01   p_cons 3.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMPR1B.5_1549_10000_0.9621_0.3672_1.png
                gene_name: BMPR1B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
BMX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
Cons ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
KS ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
BMX   10000 perm   2 sec   (5515 perm/sec)   p_kst 2.219000e-01   p_cons 6.834000e-01   p_joint 3.552000e-01

Outputting figure to mutsig2_images.part000000000017/BMX.5_2100_10000_0.2219_0.6834_0.3552.png
                gene_name: BMX
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 40 percent done.
BPIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
Cons ci ratio: 4.816114e-02	ci left: 3.887854e-01	ci right 4.080738e-01	k: 3984	n:10000
KS ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
BPIL2   10000 perm   2 sec   (5637 perm/sec)   p_kst 5.737000e-01   p_cons 3.984000e-01   p_joint 5.211000e-01

Outputting figure to mutsig2_images.part000000000017/BPIL2.5_1584_10000_0.5737_0.3984_0.5211.png
                gene_name: BPIL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 42 percent done.
BPIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
Cons ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
KS ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
BPIL3   10000 perm   2 sec   (6094 perm/sec)   p_kst 4.562000e-01   p_cons 7.063000e-01   p_joint 8.972000e-01

Outputting figure to mutsig2_images.part000000000017/BPIL3.5_1421_10000_0.4562_0.7063_0.8972.png
                gene_name: BPIL3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 44 percent done.
BRPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
BRPF3   10000 perm   2 sec   (4918 perm/sec)   p_kst 8.700000e-03   p_cons 9.180000e-02   p_joint 1.120000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 8.684489e-02	ci left: 8.842102e-02	ci right 9.649791e-02	k: 1848	n:20000
KS ci ratio: 2.822767e-01	ci left: 8.202300e-03	ci right 1.094312e-02	k: 190	n:20000
BRPF3   20000 perm   4 sec   (4469 perm/sec)   p_kst 9.500000e-03   p_cons 9.240000e-02   p_joint 4.700000e-03

Joint ci ratio: 1.817631e-01	ci left: 1.387780e-02	ci right 1.668388e-02	k: 457	n:30000
Cons ci ratio: 6.893425e-02	ci left: 9.393599e-02	ci right 1.006756e-01	k: 2918	n:30000
KS ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
BRPF3   30000 perm   7 sec   (4273 perm/sec)   p_kst 9.400000e-03   p_cons 9.726667e-02   p_joint 1.523333e-02

Joint ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
Cons ci ratio: 5.924477e-02	ci left: 9.571982e-02	ci right 1.015886e-01	k: 3945	n:40000
KS ci ratio: 2.083115e-01	ci left: 7.860632e-03	ci right 9.711739e-03	k: 350	n:40000
BRPF3   40000 perm   10 sec   (4155 perm/sec)   p_kst 8.750000e-03   p_cons 9.862500e-02   p_joint 9.275000e-03

Joint ci ratio: 2.058550e-01	ci left: 6.458676e-03	ci right 7.959392e-03	k: 359	n:50000
Cons ci ratio: 5.349402e-02	ci left: 9.437979e-02	ci right 9.958711e-02	k: 4848	n:50000
KS ci ratio: 1.847859e-01	ci left: 8.095389e-03	ci right 9.762375e-03	k: 445	n:50000
BRPF3   50000 perm   12 sec   (4064 perm/sec)   p_kst 8.900000e-03   p_cons 9.696000e-02   p_joint 7.180000e-03

Joint ci ratio: 2.034369e-01	ci left: 5.524265e-03	ci right 6.790884e-03	k: 368	n:60000
Cons ci ratio: 4.882763e-02	ci left: 9.462660e-02	ci right 9.937913e-02	k: 5819	n:60000
KS ci ratio: 1.673036e-01	ci left: 8.307743e-03	ci right 9.840308e-03	k: 543	n:60000
BRPF3   60000 perm   15 sec   (3986 perm/sec)   p_kst 9.050000e-03   p_cons 9.698333e-02   p_joint 6.133333e-03

Joint ci ratio: 1.984541e-01	ci left: 4.992717e-03	ci right 6.106016e-03	k: 387	n:70000
Cons ci ratio: 4.521301e-02	ci left: 9.477472e-02	ci right 9.917303e-02	k: 6787	n:70000
KS ci ratio: 1.547293e-01	ci left: 8.382337e-03	ci right 9.801661e-03	k: 635	n:70000
BRPF3   70000 perm   18 sec   (3905 perm/sec)   p_kst 9.071429e-03   p_cons 9.695714e-02   p_joint 5.528571e-03

Joint ci ratio: 1.872205e-01	ci left: 4.939665e-03	ci right 5.971698e-03	k: 435	n:80000
Cons ci ratio: 4.237074e-02	ci left: 9.459848e-02	ci right 9.870582e-02	k: 7731	n:80000
KS ci ratio: 1.437275e-01	ci left: 8.550004e-03	ci right 9.885951e-03	k: 736	n:80000
BRPF3   80000 perm   21 sec   (3836 perm/sec)   p_kst 9.200000e-03   p_cons 9.663750e-02   p_joint 5.437500e-03

Joint ci ratio: 1.777011e-01	ci left: 4.899790e-03	ci right 5.865845e-03	k: 483	n:90000
Cons ci ratio: 3.999718e-02	ci left: 9.450129e-02	ci right 9.836921e-02	k: 8678	n:90000
KS ci ratio: 1.348628e-01	ci left: 8.672456e-03	ci right 9.937252e-03	k: 836	n:90000
BRPF3   90000 perm   24 sec   (3778 perm/sec)   p_kst 9.288889e-03   p_cons 9.642222e-02   p_joint 5.366667e-03

Joint ci ratio: 1.478547e-01	ci left: 6.463702e-03	ci right 7.505202e-03	k: 697	n:100000
Cons ci ratio: 3.801963e-02	ci left: 9.426019e-02	ci right 9.792327e-02	k: 9608	n:100000
KS ci ratio: 1.288543e-01	ci left: 8.578801e-03	ci right 9.769929e-03	k: 916	n:100000
BRPF3   100000 perm   27 sec   (3718 perm/sec)   p_kst 9.160000e-03   p_cons 9.608000e-02   p_joint 6.970000e-03

Joint ci ratio: 1.540161e-01	ci left: 5.403485e-03	ci right 6.313774e-03	k: 643	n:110000
Cons ci ratio: 3.626720e-02	ci left: 9.426523e-02	ci right 9.775610e-02	k: 10560	n:110000
KS ci ratio: 1.221086e-01	ci left: 8.714737e-03	ci right 9.856815e-03	k: 1020	n:110000
BRPF3   110000 perm   30 sec   (3667 perm/sec)   p_kst 9.272727e-03   p_cons 9.600000e-02   p_joint 5.845455e-03

Joint ci ratio: 1.483696e-01	ci left: 5.354090e-03	ci right 6.220056e-03	k: 693	n:120000
Cons ci ratio: 3.478016e-02	ci left: 9.405771e-02	ci right 9.739519e-02	k: 11486	n:120000
KS ci ratio: 1.165840e-01	ci left: 8.788906e-03	ci right 9.885002e-03	k: 1119	n:120000
BRPF3   120000 perm   33 sec   (3616 perm/sec)   p_kst 9.325000e-03   p_cons 9.571667e-02   p_joint 5.775000e-03

Joint ci ratio: 1.520816e-01	ci left: 4.697809e-03	ci right 5.478364e-03	k: 660	n:130000
Cons ci ratio: 3.332583e-02	ci left: 9.458703e-02	ci right 9.780024e-02	k: 12504	n:130000
KS ci ratio: 1.122597e-01	ci left: 8.770384e-03	ci right 9.820911e-03	k: 1207	n:130000
BRPF3   130000 perm   36 sec   (3565 perm/sec)   p_kst 9.284615e-03   p_cons 9.618462e-02   p_joint 5.076923e-03

Joint ci ratio: 1.682074e-01	ci left: 3.539187e-03	ci right 4.195910e-03	k: 540	n:140000
Cons ci ratio: 3.291599e-02	ci left: 9.046964e-02	ci right 9.350443e-02	k: 12877	n:140000
KS ci ratio: 1.083412e-01	ci left: 8.762103e-03	ci right 9.772664e-03	k: 1296	n:140000
BRPF3   140000 perm   40 sec   (3518 perm/sec)   p_kst 9.257143e-03   p_cons 9.197857e-02   p_joint 3.857143e-03

Joint ci ratio: 1.627355e-01	ci left: 3.539695e-03	ci right 4.173054e-03	k: 577	n:150000
Cons ci ratio: 3.174398e-02	ci left: 9.081329e-02	ci right 9.374916e-02	k: 13841	n:150000
KS ci ratio: 1.042760e-01	ci left: 8.846394e-03	ci right 9.826046e-03	k: 1399	n:150000
BRPF3   150000 perm   43 sec   (3472 perm/sec)   p_kst 9.326667e-03   p_cons 9.227333e-02   p_joint 3.846667e-03

Joint ci ratio: 1.581528e-01	ci left: 3.522430e-03	ci right 4.133266e-03	k: 611	n:160000
Cons ci ratio: 3.073576e-02	ci left: 9.086117e-02	ci right 9.370362e-02	k: 14764	n:160000
KS ci ratio: 1.008740e-01	ci left: 8.878110e-03	ci right 9.827297e-03	k: 1495	n:160000
BRPF3   160000 perm   47 sec   (3427 perm/sec)   p_kst 9.343750e-03   p_cons 9.227500e-02   p_joint 3.818750e-03

Joint ci ratio: 1.270947e-01	ci left: 5.210905e-03	ci right 5.923763e-03	k: 945	n:170000
Cons ci ratio: 2.978233e-02	ci left: 9.110338e-02	ci right 9.386348e-02	k: 15721	n:170000
KS ci ratio: 9.806474e-02	ci left: 8.854896e-03	ci right 9.773719e-03	k: 1582	n:170000
BRPF3   170000 perm   50 sec   (3382 perm/sec)   p_kst 9.305882e-03   p_cons 9.247647e-02   p_joint 5.558824e-03

Joint ci ratio: 1.287669e-01	ci left: 4.792277e-03	ci right 5.457149e-03	k: 921	n:180000
Cons ci ratio: 2.892583e-02	ci left: 9.124260e-02	ci right 9.392609e-02	k: 16664	n:180000
KS ci ratio: 9.542019e-02	ci left: 8.845437e-03	ci right 9.737141e-03	k: 1671	n:180000
BRPF3   180000 perm   54 sec   (3341 perm/sec)   p_kst 9.283333e-03   p_cons 9.257778e-02   p_joint 5.116667e-03

Joint ci ratio: 1.338375e-01	ci left: 4.193821e-03	ci right 4.800397e-03	k: 853	n:190000
Cons ci ratio: 2.813833e-02	ci left: 9.137341e-02	ci right 9.398640e-02	k: 17608	n:190000
KS ci ratio: 9.279269e-02	ci left: 8.873265e-03	ci right 9.741805e-03	k: 1767	n:190000
BRPF3   190000 perm   58 sec   (3300 perm/sec)   p_kst 9.300000e-03   p_cons 9.267368e-02   p_joint 4.489474e-03

Joint ci ratio: 1.337740e-01	ci left: 3.988934e-03	ci right 4.565579e-03	k: 854	n:200000
Cons ci ratio: 2.738175e-02	ci left: 9.167589e-02	ci right 9.422592e-02	k: 18589	n:200000
KS ci ratio: 9.017580e-02	ci left: 8.937719e-03	ci right 9.786593e-03	k: 1871	n:200000
BRPF3   200000 perm   61 sec   (3262 perm/sec)   p_kst 9.355000e-03   p_cons 9.294500e-02   p_joint 4.270000e-03

Joint ci ratio: 1.106327e-01	ci left: 5.613948e-03	ci right 6.275992e-03	k: 1247	n:210000
Cons ci ratio: 2.675700e-02	ci left: 9.148654e-02	ci right 9.397234e-02	k: 19472	n:210000
KS ci ratio: 8.822031e-02	ci left: 8.903183e-03	ci right 9.729494e-03	k: 1955	n:210000
BRPF3   210000 perm   65 sec   (3222 perm/sec)   p_kst 9.309524e-03   p_cons 9.272381e-02   p_joint 5.938095e-03

Joint ci ratio: 1.200543e-01	ci left: 4.533095e-03	ci right 5.116433e-03	k: 1060	n:220000
Cons ci ratio: 2.612579e-02	ci left: 9.161776e-02	ci right 9.404752e-02	k: 20422	n:220000
KS ci ratio: 8.638674e-02	ci left: 8.871968e-03	ci right 9.677404e-03	k: 2039	n:220000
BRPF3   220000 perm   69 sec   (3184 perm/sec)   p_kst 9.268182e-03   p_cons 9.282727e-02   p_joint 4.818182e-03

Joint ci ratio: 1.175340e-01	ci left: 4.530061e-03	ci right 5.099920e-03	k: 1106	n:230000
Cons ci ratio: 2.555768e-02	ci left: 9.160420e-02	ci right 9.397999e-02	k: 21341	n:230000
KS ci ratio: 8.434287e-02	ci left: 8.911739e-03	ci right 9.700701e-03	k: 2139	n:230000
BRPF3   230000 perm   73 sec   (3147 perm/sec)   p_kst 9.300000e-03   p_cons 9.278696e-02   p_joint 4.808696e-03

Joint ci ratio: 1.132095e-01	ci left: 4.689325e-03	ci right 5.256065e-03	k: 1192	n:240000
Cons ci ratio: 2.500961e-02	ci left: 9.169587e-02	ci right 9.402230e-02	k: 22285	n:240000
KS ci ratio: 8.557824e-02	ci left: 8.295615e-03	ci right 9.041324e-03	k: 2079	n:240000
BRPF3   240000 perm   77 sec   (3111 perm/sec)   p_kst 8.662500e-03   p_cons 9.285417e-02   p_joint 4.966667e-03

Joint ci ratio: 1.120935e-01	ci left: 4.595034e-03	ci right 5.144542e-03	k: 1216	n:250000
Cons ci ratio: 2.448895e-02	ci left: 9.182447e-02	ci right 9.410498e-02	k: 23240	n:250000
KS ci ratio: 8.394045e-02	ci left: 8.284836e-03	ci right 9.014624e-03	k: 2161	n:250000
BRPF3   250000 perm   81 sec   (3076 perm/sec)   p_kst 8.644000e-03   p_cons 9.296000e-02   p_joint 4.864000e-03

Joint ci ratio: 1.126165e-01	ci left: 4.377155e-03	ci right 4.903211e-03	k: 1205	n:260000
Cons ci ratio: 2.401649e-02	ci left: 9.182505e-02	ci right 9.406096e-02	k: 24164	n:260000
KS ci ratio: 8.202531e-02	ci left: 8.350366e-03	ci right 9.068342e-03	k: 2263	n:260000
BRPF3   260000 perm   85 sec   (3041 perm/sec)   p_kst 8.703846e-03   p_cons 9.293846e-02   p_joint 4.634615e-03

Joint ci ratio: 1.115626e-01	ci left: 4.297825e-03	ci right 4.809195e-03	k: 1228	n:270000
Cons ci ratio: 2.358694e-02	ci left: 9.170808e-02	ci right 9.390067e-02	k: 25056	n:270000
KS ci ratio: 8.064920e-02	ci left: 8.324102e-03	ci right 9.027247e-03	k: 2341	n:270000
BRPF3   270000 perm   90 sec   (3007 perm/sec)   p_kst 8.670370e-03   p_cons 9.280000e-02   p_joint 4.548148e-03

Joint ci ratio: 1.103165e-01	ci left: 4.241550e-03	ci right 4.740220e-03	k: 1256	n:280000
Cons ci ratio: 2.319343e-02	ci left: 9.150033e-02	ci right 9.365096e-02	k: 25920	n:280000
KS ci ratio: 7.925754e-02	ci left: 8.317313e-03	ci right 9.007201e-03	k: 2424	n:280000
BRPF3   280000 perm   94 sec   (2973 perm/sec)   p_kst 8.657143e-03   p_cons 9.257143e-02   p_joint 4.485714e-03

Joint ci ratio: 1.095833e-01	ci left: 4.152288e-03	ci right 4.637009e-03	k: 1273	n:290000
Cons ci ratio: 2.277216e-02	ci left: 9.165027e-02	ci right 9.376478e-02	k: 26884	n:290000
KS ci ratio: 7.791985e-02	ci left: 8.314471e-03	ci right 8.991955e-03	k: 2508	n:290000
BRPF3   290000 perm   99 sec   (2940 perm/sec)   p_kst 8.648276e-03   p_cons 9.270345e-02   p_joint 4.389655e-03

Joint ci ratio: 1.075748e-01	ci left: 4.169535e-03	ci right 4.646783e-03	k: 1321	n:300000
Cons ci ratio: 2.238235e-02	ci left: 9.172088e-02	ci right 9.380033e-02	k: 27827	n:300000
KS ci ratio: 7.658812e-02	ci left: 8.324990e-03	ci right 8.991221e-03	k: 2596	n:300000
BRPF3   300000 perm   103 sec   (2908 perm/sec)   p_kst 8.653333e-03   p_cons 9.275667e-02   p_joint 4.403333e-03

Joint ci ratio: 1.088720e-01	ci left: 3.937715e-03	ci right 4.394212e-03	k: 1290	n:310000
Cons ci ratio: 2.200767e-02	ci left: 9.181932e-02	ci right 9.386572e-02	k: 28780	n:310000
KS ci ratio: 7.559268e-02	ci left: 8.274779e-03	ci right 8.928006e-03	k: 2665	n:310000
BRPF3   310000 perm   108 sec   (2876 perm/sec)   p_kst 8.596774e-03   p_cons 9.283871e-02   p_joint 4.161290e-03

Joint ci ratio: 1.080420e-01	ci left: 3.875459e-03	ci right 4.321095e-03	k: 1310	n:320000
Cons ci ratio: 2.163917e-02	ci left: 9.200518e-02	ci right 9.402095e-02	k: 29763	n:320000
KS ci ratio: 7.425264e-02	ci left: 8.313644e-03	ci right 8.957802e-03	k: 2762	n:320000
BRPF3   320000 perm   112 sec   (2845 perm/sec)   p_kst 8.631250e-03   p_cons 9.300938e-02   p_joint 4.093750e-03

Joint ci ratio: 1.070692e-01	ci left: 3.828787e-03	ci right 4.264842e-03	k: 1334	n:330000
Cons ci ratio: 2.130768e-02	ci left: 9.202924e-02	ci right 9.401428e-02	k: 30696	n:330000
KS ci ratio: 7.316226e-02	ci left: 8.308593e-03	ci right 8.942505e-03	k: 2845	n:330000
BRPF3   330000 perm   117 sec   (2815 perm/sec)   p_kst 8.621212e-03   p_cons 9.301818e-02   p_joint 4.042424e-03

Joint ci ratio: 1.068749e-01	ci left: 3.730478e-03	ci right 4.154517e-03	k: 1339	n:340000
Cons ci ratio: 2.098220e-02	ci left: 9.212237e-02	ci right 9.407869e-02	k: 31653	n:340000
KS ci ratio: 7.196999e-02	ci left: 8.338569e-03	ci right 8.963966e-03	k: 2940	n:340000
BRPF3   340000 perm   122 sec   (2785 perm/sec)   p_kst 8.647059e-03   p_cons 9.309706e-02   p_joint 3.938235e-03

Joint ci ratio: 1.051234e-01	ci left: 3.749057e-03	ci right 4.167793e-03	k: 1384	n:350000
Cons ci ratio: 2.068658e-02	ci left: 9.208526e-02	ci right 9.401291e-02	k: 32566	n:350000
KS ci ratio: 7.082240e-02	ci left: 8.369718e-03	ci right 8.987030e-03	k: 3036	n:350000
BRPF3   350000 perm   127 sec   (2756 perm/sec)   p_kst 8.674286e-03   p_cons 9.304571e-02   p_joint 3.954286e-03

Joint ci ratio: 1.072083e-01	ci left: 3.501579e-03	ci right 3.900919e-03	k: 1331	n:360000
Cons ci ratio: 2.039137e-02	ci left: 9.214717e-02	ci right 9.404827e-02	k: 33514	n:360000
KS ci ratio: 6.988569e-02	ci left: 8.360994e-03	ci right 8.969176e-03	k: 3118	n:360000
BRPF3   360000 perm   132 sec   (2728 perm/sec)   p_kst 8.661111e-03   p_cons 9.309444e-02   p_joint 3.697222e-03

Joint ci ratio: 1.059440e-01	ci left: 3.491122e-03	ci right 3.884281e-03	k: 1363	n:370000
Cons ci ratio: 2.011359e-02	ci left: 9.216288e-02	ci right 9.403810e-02	k: 34446	n:370000
KS ci ratio: 6.895260e-02	ci left: 8.360763e-03	ci right 8.960483e-03	k: 3203	n:370000
BRPF3   370000 perm   137 sec   (2700 perm/sec)   p_kst 8.656757e-03   p_cons 9.309730e-02   p_joint 3.683784e-03

Joint ci ratio: 1.056001e-01	ci left: 3.422302e-03	ci right 3.806381e-03	k: 1372	n:380000
Cons ci ratio: 1.984594e-02	ci left: 9.218578e-02	ci right 9.403622e-02	k: 35381	n:380000
KS ci ratio: 6.808725e-02	ci left: 8.352834e-03	ci right 8.944169e-03	k: 3285	n:380000
BRPF3   380000 perm   142 sec   (2673 perm/sec)   p_kst 8.644737e-03   p_cons 9.310789e-02   p_joint 3.610526e-03

Joint ci ratio: 9.689073e-02	ci left: 3.976921e-03	ci right 4.384346e-03	k: 1629	n:390000
Cons ci ratio: 1.959048e-02	ci left: 9.219235e-02	ci right 9.401883e-02	k: 36310	n:390000
KS ci ratio: 6.407673e-02	ci left: 9.200448e-03	ci right 9.812001e-03	k: 3706	n:390000
BRPF3   390000 perm   147 sec   (2646 perm/sec)   p_kst 9.502564e-03   p_cons 9.310256e-02   p_joint 4.176923e-03

Outputting figure to mutsig2_images.part000000000017/BRPF3.5_3666_390000_0.0095026_0.093103_0.0041769.png
                gene_name: BRPF3
               theta_stop: 0.097 
                    nperm: 390000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.0042 
     ci_joint_bounds_left: 0.0040 
    ci_joint_bounds_right: 0.0044 

Current progress: 46 percent done.
BRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
Cons ci ratio: 3.607020e-03	ci left: 9.897211e-01	ci right 9.933838e-01	k: 9917	n:10000
KS ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
BRWD1   10000 perm   2 sec   (4049 perm/sec)   p_kst 3.760000e-02   p_cons 9.917000e-01   p_joint 1.426000e-01

Joint ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
Cons ci ratio: 2.351949e-03	ci left: 9.916368e-01	ci right 9.940165e-01	k: 19858	n:20000
KS ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
BRWD1   20000 perm   5 sec   (3718 perm/sec)   p_kst 3.745000e-02   p_cons 9.929000e-01   p_joint 1.275500e-01

Joint ci ratio: 7.621448e-02	ci left: 7.793665e-02	ci right 8.414477e-02	k: 2430	n:30000
Cons ci ratio: 1.830467e-03	ci left: 9.925602e-01	ci right 9.944090e-01	k: 29806	n:30000
KS ci ratio: 1.155139e-01	ci left: 3.482746e-02	ci right 3.912947e-02	k: 1108	n:30000
BRWD1   30000 perm   8 sec   (3589 perm/sec)   p_kst 3.693333e-02   p_cons 9.935333e-01   p_joint 8.100000e-02

Joint ci ratio: 6.668156e-02	ci left: 7.686707e-02	ci right 8.219416e-02	k: 3180	n:40000
Cons ci ratio: 1.519495e-03	ci left: 9.932468e-01	ci right 9.947801e-01	k: 39762	n:40000
KS ci ratio: 9.999156e-02	ci left: 3.514695e-02	ci right 3.887066e-02	k: 1479	n:40000
BRWD1   40000 perm   11 sec   (3501 perm/sec)   p_kst 3.697500e-02   p_cons 9.940500e-01   p_joint 7.950000e-02

Outputting figure to mutsig2_images.part000000000017/BRWD1.5_7384_40000_0.036975_0.99405_0.0795.png
                gene_name: BRWD1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 47 percent done.
BTD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
Cons ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
BTD   10000 perm   2 sec   (5452 perm/sec)   p_kst 2.060000e-02   p_cons 8.189000e-01   p_joint 1.020000e-01

Joint ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
Cons ci ratio: 1.342289e-02	ci left: 8.045437e-01	ci right 8.154660e-01	k: 16201	n:20000
KS ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
BTD   20000 perm   4 sec   (4924 perm/sec)   p_kst 2.065000e-02   p_cons 8.100500e-01   p_joint 5.170000e-02

Joint ci ratio: 7.972960e-02	ci left: 7.158601e-02	ci right 7.756336e-02	k: 2236	n:30000
Cons ci ratio: 1.067683e-02	ci left: 8.135528e-01	ci right 8.223189e-01	k: 24539	n:30000
KS ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
BTD   30000 perm   6 sec   (4715 perm/sec)   p_kst 1.926667e-02   p_cons 8.179667e-01   p_joint 7.453333e-02

Joint ci ratio: 8.070096e-02	ci left: 5.344779e-02	ci right 5.796698e-02	k: 2227	n:40000
Cons ci ratio: 9.482812e-03	ci left: 8.064481e-01	ci right 8.141568e-01	k: 32413	n:40000
KS ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
BTD   40000 perm   9 sec   (4579 perm/sec)   p_kst 1.977500e-02   p_cons 8.103250e-01   p_joint 5.567500e-02

Joint ci ratio: 7.454939e-02	ci left: 5.044321e-02	ci right 5.436896e-02	k: 2619	n:50000
Cons ci ratio: 8.502762e-03	ci left: 8.060904e-01	ci right 8.129936e-01	k: 40478	n:50000
KS ci ratio: 1.183218e-01	ci left: 2.020765e-02	ci right 2.276832e-02	k: 1073	n:50000
BTD   50000 perm   11 sec   (4470 perm/sec)   p_kst 2.146000e-02   p_cons 8.095600e-01   p_joint 5.238000e-02

Joint ci ratio: 6.603890e-02	ci left: 5.363200e-02	ci right 5.731114e-02	k: 3327	n:60000
Cons ci ratio: 7.793611e-03	ci left: 8.051271e-01	ci right 8.114431e-01	k: 48498	n:60000
KS ci ratio: 1.085215e-01	ci left: 2.012714e-02	ci right 2.245282e-02	k: 1276	n:60000
BTD   60000 perm   14 sec   (4371 perm/sec)   p_kst 2.126667e-02   p_cons 8.083000e-01   p_joint 5.545000e-02

Joint ci ratio: 6.601397e-02	ci left: 4.637180e-02	ci right 4.955152e-02	k: 3356	n:70000
Cons ci ratio: 7.204829e-03	ci left: 8.058238e-01	ci right 8.116648e-01	k: 56613	n:70000
KS ci ratio: 1.010213e-01	ci left: 1.999236e-02	ci right 2.213331e-02	k: 1473	n:70000
BTD   70000 perm   16 sec   (4289 perm/sec)   p_kst 2.104286e-02   p_cons 8.087571e-01   p_joint 4.794286e-02

Joint ci ratio: 6.371643e-02	ci left: 4.373378e-02	ci right 4.662432e-02	k: 3613	n:80000
Cons ci ratio: 6.728210e-03	ci left: 8.065351e-01	ci right 8.119924e-01	k: 64742	n:80000
KS ci ratio: 9.405782e-02	ci left: 2.024958e-02	ci right 2.226035e-02	k: 1699	n:80000
BTD   80000 perm   19 sec   (4211 perm/sec)   p_kst 2.123750e-02   p_cons 8.092750e-01   p_joint 4.516250e-02

Outputting figure to mutsig2_images.part000000000017/BTD.5_1648_80000_0.021237_0.80927_0.045163.png
                gene_name: BTD
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 49 percent done.
BMP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
Cons ci ratio: 4.517048e-02	ci left: 4.197698e-01	ci right 4.392713e-01	k: 4295	n:10000
KS ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
BMP7   10000 perm   2 sec   (5908 perm/sec)   p_kst 3.497000e-01   p_cons 4.295000e-01   p_joint 3.766000e-01

Outputting figure to mutsig2_images.part000000000017/BMP7.4_1324_10000_0.3497_0.4295_0.3766.png
                gene_name: BMP7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 51 percent done.
BPHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
Cons ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
BPHL   10000 perm   2 sec   (5991 perm/sec)   p_kst 2.943000e-01   p_cons 1.788000e-01   p_joint 3.919000e-01

Outputting figure to mutsig2_images.part000000000017/BPHL.4_904_10000_0.2943_0.1788_0.3919.png
                gene_name: BPHL
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 53 percent done.
BPIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
KS ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
BPIL1   10000 perm   2 sec   (6246 perm/sec)   p_kst 7.280000e-01   p_cons 6.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BPIL1.4_1437_10000_0.728_0.6435_1.png
                gene_name: BPIL1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
BRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
KS ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
BRD1   10000 perm   2 sec   (5253 perm/sec)   p_kst 1.718000e-01   p_cons 4.955000e-01   p_joint 3.163000e-01

Outputting figure to mutsig2_images.part000000000017/BRD1.4_3225_10000_0.1718_0.4955_0.3163.png
                gene_name: BRD1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 56 percent done.
BRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
Cons ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
KS ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
BRD9   10000 perm   2 sec   (5629 perm/sec)   p_kst 3.686000e-01   p_cons 8.339000e-01   p_joint 5.447000e-01

Outputting figure to mutsig2_images.part000000000017/BRD9.4_1858_10000_0.3686_0.8339_0.5447.png
                gene_name: BRD9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 58 percent done.
BRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
Cons ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
KS ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
BRF1   10000 perm   2 sec   (5401 perm/sec)   p_kst 3.680000e-02   p_cons 7.024000e-01   p_joint 7.420000e-02

Joint ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
Cons ci ratio: 1.798804e-02	ci left: 6.972670e-01	ci right 7.099737e-01	k: 14073	n:20000
KS ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
BRF1   20000 perm   4 sec   (4874 perm/sec)   p_kst 3.770000e-02   p_cons 7.036500e-01   p_joint 8.660000e-02

Joint ci ratio: 7.300946e-02	ci left: 8.445702e-02	ci right 9.088975e-02	k: 2629	n:30000
Cons ci ratio: 1.429674e-02	ci left: 7.096200e-01	ci right 7.198717e-01	k: 21443	n:30000
KS ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
BRF1   30000 perm   6 sec   (4678 perm/sec)   p_kst 3.976667e-02   p_cons 7.147667e-01   p_joint 8.763333e-02

Joint ci ratio: 6.583094e-02	ci left: 7.873821e-02	ci right 8.412274e-02	k: 3256	n:40000
Cons ci ratio: 1.237810e-02	ci left: 7.104226e-01	ci right 7.192961e-01	k: 28595	n:40000
KS ci ratio: 9.664986e-02	ci left: 3.758775e-02	ci right 4.142947e-02	k: 1579	n:40000
BRF1   40000 perm   9 sec   (4543 perm/sec)   p_kst 3.947500e-02   p_cons 7.148750e-01   p_joint 8.140000e-02

Outputting figure to mutsig2_images.part000000000017/BRF1.4_2106_40000_0.039475_0.71488_0.0814.png
                gene_name: BRF1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 60 percent done.
BRPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
KS ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
BRPF1   10000 perm   2 sec   (5034 perm/sec)   p_kst 7.455000e-01   p_cons 4.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRPF1.4_3715_10000_0.7455_0.4127_1.png
                gene_name: BRPF1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
BRSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
BRSK1   10000 perm   2 sec   (5568 perm/sec)   p_kst 6.601000e-01   p_cons 9.030000e-02   p_joint 3.584000e-01

Joint ci ratio: 4.650258e-02	ci left: 2.560150e-01	ci right 2.682542e-01	k: 5242	n:20000
Cons ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
KS ci ratio: 1.993831e-02	ci left: 6.523824e-01	ci right 6.655713e-01	k: 13180	n:20000
BRSK1   20000 perm   4 sec   (5014 perm/sec)   p_kst 6.590000e-01   p_cons 8.895000e-02   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000017/BRSK1.4_2413_20000_0.659_0.08895_0.2621.png
                gene_name: BRSK1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 63 percent done.
BRSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
Cons ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
KS ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
BRSK2   10000 perm   2 sec   (5685 perm/sec)   p_kst 3.747000e-01   p_cons 8.740000e-02   p_joint 2.479000e-01

Joint ci ratio: 5.229848e-02	ci left: 2.135321e-01	ci right 2.250496e-01	k: 4385	n:20000
Cons ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
KS ci ratio: 3.694220e-02	ci left: 3.534928e-01	ci right 3.668479e-01	k: 7203	n:20000
BRSK2   20000 perm   4 sec   (5104 perm/sec)   p_kst 3.601500e-01   p_cons 8.215000e-02   p_joint 2.192500e-01

Outputting figure to mutsig2_images.part000000000017/BRSK2.4_2087_20000_0.36015_0.08215_0.21925.png
                gene_name: BRSK2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 65 percent done.
BSND
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
Cons ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
KS ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
BSND   10000 perm   2 sec   (6143 perm/sec)   p_kst 9.357000e-01   p_cons 3.194000e-01   p_joint 8.552000e-01

Outputting figure to mutsig2_images.part000000000017/BSND.4_979_10000_0.9357_0.3194_0.8552.png
                gene_name: BSND
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 67 percent done.
BTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
KS ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
BTBD12   10000 perm   2 sec   (4782 perm/sec)   p_kst 6.276000e-01   p_cons 6.721000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD12.4_5561_10000_0.6276_0.6721_1.png
                gene_name: BTBD12
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
BMP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
Cons ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
KS ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
BMP6   10000 perm   2 sec   (6212 perm/sec)   p_kst 2.665000e-01   p_cons 8.063000e-01   p_joint 4.457000e-01

Outputting figure to mutsig2_images.part000000000017/BMP6.3_1570_10000_0.2665_0.8063_0.4457.png
                gene_name: BMP6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 70 percent done.
BPNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
Cons ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
KS ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
BPNT1   10000 perm   2 sec   (6340 perm/sec)   p_kst 2.228000e-01   p_cons 7.258000e-01   p_joint 2.228000e-01

Outputting figure to mutsig2_images.part000000000017/BPNT1.3_959_10000_0.2228_0.7258_0.2228.png
                gene_name: BPNT1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 72 percent done.
BRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
Cons ci ratio: 9.727431e-02	ci left: 1.328630e-01	ci right 1.465476e-01	k: 1396	n:10000
KS ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
BRF2   10000 perm   2 sec   (6239 perm/sec)   p_kst 8.435000e-01   p_cons 1.396000e-01   p_joint 4.739000e-01

Outputting figure to mutsig2_images.part000000000017/BRF2.3_1276_10000_0.8435_0.1396_0.4739.png
                gene_name: BRF2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 74 percent done.
BTBD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
Cons ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
KS ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
BTBD10   10000 perm   2 sec   (6303 perm/sec)   p_kst 3.371000e-01   p_cons 4.927000e-01   p_joint 3.486000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD10.3_1460_10000_0.3371_0.4927_0.3486.png
                gene_name: BTBD10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 75 percent done.
BTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
Cons ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
KS ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
BTBD7   10000 perm   2 sec   (5346 perm/sec)   p_kst 3.353000e-01   p_cons 4.326000e-01   p_joint 3.071000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD7.3_3514_10000_0.3353_0.4326_0.3071.png
                gene_name: BTBD7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 77 percent done.
BTBD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
Cons ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
KS ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
BTBD8   10000 perm   2 sec   (6346 perm/sec)   p_kst 5.017000e-01   p_cons 6.899000e-01   p_joint 7.032000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD8.3_1173_10000_0.5017_0.6899_0.7032.png
                gene_name: BTBD8
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 79 percent done.
BMPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
KS ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
BMPR2   10000 perm   2 sec   (5643 perm/sec)   p_kst 5.283000e-01   p_cons 1.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMPR2.2_3169_10000_0.5283_0.162_1.png
                gene_name: BMPR2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
BOLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
BOLA1   10000 perm   1 sec   (7448 perm/sec)   p_kst 3.120000e-01   p_cons 5.981000e-01   p_joint 9.615000e-01

Outputting figure to mutsig2_images.part000000000017/BOLA1.2_418_10000_0.312_0.5981_0.9615.png
                gene_name: BOLA1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
BOLL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
Cons ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
KS ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
BOLL   10000 perm   1 sec   (7093 perm/sec)   p_kst 6.340000e-01   p_cons 1.822000e-01   p_joint 3.488000e-01

Outputting figure to mutsig2_images.part000000000017/BOLL.2_932_10000_0.634_0.1822_0.3488.png
                gene_name: BOLL
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 84 percent done.
BPGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
KS ci ratio: 3.153859e-02	ci left: 5.973472e-01	ci right 6.165905e-01	k: 6070	n:10000
BPGM   10000 perm   1 sec   (7189 perm/sec)   p_kst 6.070000e-01   p_cons 1.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BPGM.2_788_10000_0.607_0.1804_1.png
                gene_name: BPGM
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
BRCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
BRCC3   10000 perm   1 sec   (6837 perm/sec)   p_kst 1   p_cons 5.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRCC3.2_995_10000_1_0.5167_1.png
                gene_name: BRCC3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
BRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 7.348846e-02	ci left: 2.132945e-01	ci right 2.296681e-01	k: 2214	n:10000
BRD2   10000 perm   2 sec   (6245 perm/sec)   p_kst 2.214000e-01   p_cons 4.130000e-02   p_joint 4.250000e-01

Joint ci ratio: 1.540727e-01	ci left: 2.893010e-02	ci right 3.380740e-02	k: 626	n:20000
Cons ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
KS ci ratio: 5.218420e-02	ci left: 2.142750e-01	ci right 2.258065e-01	k: 4400	n:20000
BRD2   20000 perm   4 sec   (5547 perm/sec)   p_kst 2.200000e-01   p_cons 4.115000e-02   p_joint 3.130000e-02

Joint ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
Cons ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
KS ci ratio: 4.240870e-02	ci left: 2.169438e-01	ci right 2.263768e-01	k: 6649	n:30000
BRD2   30000 perm   6 sec   (5284 perm/sec)   p_kst 2.216333e-01   p_cons 4.046667e-02   p_joint 3.043333e-02

Joint ci ratio: 1.052354e-01	ci left: 3.175807e-02	ci right 3.531007e-02	k: 1340	n:40000
Cons ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
KS ci ratio: 3.651200e-02	ci left: 2.195990e-01	ci right 2.277911e-01	k: 8947	n:40000
BRD2   40000 perm   8 sec   (5112 perm/sec)   p_kst 2.236750e-01   p_cons 3.995000e-02   p_joint 3.350000e-02

Joint ci ratio: 6.826941e-02	ci left: 5.974425e-02	ci right 6.398679e-02	k: 3092	n:50000
Cons ci ratio: 8.621946e-02	ci left: 3.798574e-02	ci right 4.142796e-02	k: 1984	n:50000
KS ci ratio: 3.263668e-02	ci left: 2.202523e-01	ci right 2.275798e-01	k: 11195	n:50000
BRD2   50000 perm   10 sec   (4975 perm/sec)   p_kst 2.239000e-01   p_cons 3.968000e-02   p_joint 6.184000e-02

Outputting figure to mutsig2_images.part000000000017/BRD2.2_2454_50000_0.2239_0.03968_0.06184.png
                gene_name: BRD2
               theta_stop: 0.086 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 89 percent done.
BRD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
KS ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
BRD8   10000 perm   2 sec   (5530 perm/sec)   p_kst 4.134000e-01   p_cons 7.337000e-01   p_joint 6.234000e-01

Outputting figure to mutsig2_images.part000000000017/BRD8.2_4103_10000_0.4134_0.7337_0.6234.png
                gene_name: BRD8
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 91 percent done.
BSCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
Cons ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
KS ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
BSCL2   10000 perm   2 sec   (6550 perm/sec)   p_kst 7.880000e-02   p_cons 9.705000e-01   p_joint 4.568000e-01

Joint ci ratio: 1.554229e-02	ci left: 7.548251e-01	ci right 7.666990e-01	k: 15216	n:20000
Cons ci ratio: 4.827806e-03	ci left: 9.681644e-01	ci right 9.728975e-01	k: 19412	n:20000
KS ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
BSCL2   20000 perm   3 sec   (5810 perm/sec)   p_kst 8.095000e-02   p_cons 9.706000e-01   p_joint 7.608000e-01

Outputting figure to mutsig2_images.part000000000017/BSCL2.2_1433_20000_0.08095_0.9706_0.7608.png
                gene_name: BSCL2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 93 percent done.
BSDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
Cons ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
BSDC1   10000 perm   2 sec   (6590 perm/sec)   p_kst 7.130000e-02   p_cons 8.262000e-01   p_joint 8.966000e-01

Joint ci ratio: 1.293217e-02	ci left: 8.158684e-01	ci right 8.265380e-01	k: 16425	n:20000
Cons ci ratio: 1.267822e-02	ci left: 8.216854e-01	ci right 8.322193e-01	k: 16540	n:20000
KS ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
BSDC1   20000 perm   3 sec   (5826 perm/sec)   p_kst 7.125000e-02   p_cons 8.270000e-01   p_joint 8.212500e-01

Joint ci ratio: 7.855305e-03	ci left: 8.889402e-01	ci right 8.959836e-01	k: 26775	n:30000
Cons ci ratio: 1.034556e-02	ci left: 8.228398e-01	ci right 8.314301e-01	k: 24815	n:30000
KS ci ratio: 8.127097e-02	ci left: 6.903446e-02	ci right 7.491542e-02	k: 2158	n:30000
BSDC1   30000 perm   5 sec   (5534 perm/sec)   p_kst 7.193333e-02   p_cons 8.271667e-01   p_joint 8.925000e-01

Outputting figure to mutsig2_images.part000000000017/BSDC1.2_1388_30000_0.071933_0.82717_0.8925.png
                gene_name: BSDC1
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 95 percent done.
BSX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
Cons ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
KS ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
BSX   10000 perm   1 sec   (6977 perm/sec)   p_kst 4.712000e-01   p_cons 3.059000e-01   p_joint 5.001000e-01

Outputting figure to mutsig2_images.part000000000017/BSX.2_713_10000_0.4712_0.3059_0.5001.png
                gene_name: BSX
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 96 percent done.
BTBD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
KS ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
BTBD16   10000 perm   2 sec   (6448 perm/sec)   p_kst 2.072000e-01   p_cons 9.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD16.2_1581_10000_0.2072_0.9698_1.png
                gene_name: BTBD16
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
BTC   10000 perm   1 sec   (7069 perm/sec)   p_kst 4.178000e-01   p_cons 1.596000e-01   p_joint 2.653000e-01

Outputting figure to mutsig2_images.part000000000017/BTC.2_557_10000_0.4178_0.1596_0.2653.png
                gene_name: BTC
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000017
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 17 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 4421748: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000018> was used as the working directory.
Started at Wed Oct 24 17:31:18 2012
Results reported at Wed Oct 24 20:36:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000018.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000018.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 18  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000018.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11264.93 sec.
    Max Memory :      5342 MB
    Max Swap   :      7829 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
18
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 18
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 18: processing genes 1539 - 1628
Calculating significance of each gene.
Using projection method.
1539	BTG2	1.134561e-01
1540	BTG3	1
1541	BTG4	7.230638e-01
1542	BTK	6.850742e-03
1543	BTLA	4.957303e-01
1544	BTN1A1	8.980359e-01
1545	BTN2A1	7.475491e-01
1546	BTN2A2	1
1547	BTN3A1	6.434059e-01
1548	BTN3A2	6.287339e-01
1549	BTN3A3	5.613610e-01
1550	BTNL2	1
1551	BTNL3	3.342945e-01
1552	BTNL8	7.938344e-01
1553	BTNL9	5.513981e-01
1554	BTRC	1.268128e-02
1555	BUB1	9.953674e-01
1556	BUB1B	3.496161e-01
1557	BUB3	7.224546e-01
1558	BUD13	1.545011e-01
1559	BUD31	1
1560	BVES	1.836979e-01
1561	BYSL	8.164685e-01
1562	BZRAP1	9.977424e-01
1563	BZW1	5.811406e-01
1564	BZW2	1
1565	C10orf10	6.310170e-01
1566	C10orf107	2.596285e-01
1567	C10orf11	1.758147e-02
1568	C10orf111	2.494715e-01
1569	C10orf113	5.515928e-01
1570	C10orf114	1.990603e-01
1571	C10orf116	1
1572	C10orf118	9.642222e-01
1573	C10orf119	6.722454e-01
1574	C10orf12	9.308707e-01
1575	C10orf120	1.013090e-01
1576	C10orf125	1
1577	C10orf128	1
1578	C10orf129	1
In gene C10orf137 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 3669    n = 1	mu =   3.68e-07
1579	C10orf137	9.701141e-01
1580	C10orf140	6.365189e-02
1581	C10orf18	1
1582	C10orf2	1
1583	C10orf25	2.245018e-01
1584	C10orf26	8.278054e-01
1585	C10orf27	2.661108e-01
1586	C10orf28	5.959048e-01
1587	C10orf32	1
1588	C10orf35	1
1589	C10orf46	8.892909e-01
1590	C10orf47	4.557670e-01
1591	C10orf53	1
1592	C10orf54	1
1593	C10orf55	1
1594	C10orf57	5.095436e-01
1595	C10orf58	5.400015e-01
1596	C10orf62	1
1597	C10orf67	1
1598	C10orf68	9.314472e-02
1599	C10orf71	2.874600e-03
1600	C10orf72	2.434541e-01
1601	C10orf76	1
1602	C10orf78	4.324930e-01
1603	C10orf79	3.364256e-01
1604	C10orf81	7.278924e-03
1605	C10orf82	2.562220e-01
1606	C10orf84	4.595054e-01
1607	C10orf88	8.641636e-01
1608	C10orf90	8.556565e-01
1609	C10orf91	1
1610	C10orf93	8.482760e-01
1611	C10orf96	1.347168e-02
1612	C10orf99	1
1613	C11orf1	7.071858e-02
1614	C11orf10	1
1615	C11orf16	7.884228e-01
1616	C11orf17	3.051123e-01
1617	C11orf2	8.743171e-01
1618	C11orf20	1
1619	C11orf24	1
1620	C11orf30	6.289980e-01
1621	C11orf31	1
1622	C11orf35	6.002897e-01
1623	C11orf40	5.791006e-01
1624	C11orf41	2.534111e-01
1625	C11orf42	1
1626	C11orf45	3.922035e-01
1627	C11orf46	1.701045e-01
1628	C11orf48	3.575558e-01
Done

Running MutSig 2:
Scatter job 18: processing genes 1539 - 1628
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C11orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
Cons ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
C11orf41   10000 perm   2 sec   (4098 perm/sec)   p_kst 7.105000e-01   p_cons 4.864000e-01   p_joint 7.435000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf41.18_5648_10000_0.7105_0.4864_0.7435.png
                gene_name: C11orf41
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 2 percent done.
BTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
Cons ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
BTK   10000 perm   2 sec   (4982 perm/sec)   p_kst 1.460000e-01   p_cons 9.284000e-01   p_joint 2.734000e-01

Outputting figure to mutsig2_images.part000000000018/BTK.11_2052_10000_0.146_0.9284_0.2734.png
                gene_name: BTK
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 4 percent done.
C10orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
C10orf71   10000 perm   2 sec   (4519 perm/sec)   p_kst 2.000000e-04   p_cons 6.948000e-01   p_joint 1.630000e-02

Joint ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
Cons ci ratio: 1.833152e-02	ci left: 6.892702e-01	ci right 7.020729e-01	k: 13914	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
C10orf71   20000 perm   5 sec   (4120 perm/sec)   p_kst 2.500000e-04   p_cons 6.957000e-01   p_joint 7.250000e-03

Joint ci ratio: 3.160988e-01	ci left: 4.294810e-03	ci right 5.936614e-03	k: 152	n:30000
Cons ci ratio: 1.504676e-02	ci left: 6.882142e-01	ci right 6.986816e-01	k: 20804	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
C10orf71   30000 perm   8 sec   (3967 perm/sec)   p_kst 2.666667e-04   p_cons 6.934667e-01   p_joint 5.066667e-03

Joint ci ratio: 3.194620e-01	ci left: 3.151775e-03	ci right 4.372012e-03	k: 149	n:40000
Cons ci ratio: 1.329874e-02	ci left: 6.801711e-01	ci right 6.893021e-01	k: 27390	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
C10orf71   40000 perm   10 sec   (3870 perm/sec)   p_kst 2.500000e-04   p_cons 6.847500e-01   p_joint 3.725000e-03

Joint ci ratio: 3.174672e-01	ci left: 2.558091e-03	ci right 3.541012e-03	k: 151	n:50000
Cons ci ratio: 1.186147e-02	ci left: 6.818711e-01	ci right 6.900273e-01	k: 34298	n:50000
KS ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
C10orf71   50000 perm   13 sec   (3800 perm/sec)   p_kst 2.200000e-04   p_cons 6.859600e-01   p_joint 3.020000e-03

Joint ci ratio: 2.958892e-01	ci left: 2.485597e-03	ci right 3.363580e-03	k: 174	n:60000
Cons ci ratio: 1.083707e-02	ci left: 6.818678e-01	ci right 6.893142e-01	k: 41136	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
C10orf71   60000 perm   16 sec   (3735 perm/sec)   p_kst 2.500000e-04   p_cons 6.856000e-01   p_joint 2.900000e-03

Joint ci ratio: 2.767876e-01	ci left: 2.462028e-03	ci right 3.265775e-03	k: 199	n:70000
Cons ci ratio: 9.412524e-03	ci left: 7.090883e-01	ci right 7.158084e-01	k: 49872	n:70000
KS ci ratio: 9.798810e-01	ci left: 1.199389e-04	ci right 3.534071e-04	k: 15	n:70000
C10orf71   70000 perm   19 sec   (3679 perm/sec)   p_kst 2.142857e-04   p_cons 7.124571e-01   p_joint 2.842857e-03

Joint ci ratio: 3.048548e-01	ci left: 1.748508e-03	ci right 2.388465e-03	k: 164	n:80000
Cons ci ratio: 9.365883e-03	ci left: 6.832598e-01	ci right 6.897017e-01	k: 54919	n:80000
KS ci ratio: 9.238431e-01	ci left: 1.237938e-04	ci right 3.402114e-04	k: 17	n:80000
C10orf71   80000 perm   22 sec   (3627 perm/sec)   p_kst 2.125000e-04   p_cons 6.864875e-01   p_joint 2.050000e-03

Joint ci ratio: 3.156105e-01	ci left: 1.441480e-03	ci right 1.991436e-03	k: 153	n:90000
Cons ci ratio: 8.839109e-03	ci left: 6.830120e-01	ci right 6.890871e-01	k: 61745	n:90000
KS ci ratio: 9.238553e-01	ci left: 1.100385e-04	ci right 3.024122e-04	k: 17	n:90000
C10orf71   90000 perm   25 sec   (3578 perm/sec)   p_kst 1.888889e-04   p_cons 6.860556e-01   p_joint 1.700000e-03

Joint ci ratio: 3.067862e-01	ci left: 1.380298e-03	ci right 1.889310e-03	k: 162	n:100000
Cons ci ratio: 8.392054e-03	ci left: 6.828324e-01	ci right 6.885968e-01	k: 68572	n:100000
KS ci ratio: 8.992197e-01	ci left: 1.066828e-04	ci right 2.844627e-04	k: 18	n:100000
C10orf71   100000 perm   28 sec   (3531 perm/sec)   p_kst 1.800000e-04   p_cons 6.857200e-01   p_joint 1.620000e-03

Joint ci ratio: 2.034471e-01	ci left: 3.021456e-03	ci right 3.714227e-03	k: 369	n:110000
Cons ci ratio: 7.834734e-03	ci left: 6.919962e-01	ci right 6.974481e-01	k: 76420	n:110000
KS ci ratio: 8.553286e-01	ci left: 1.110627e-04	ci right 2.807895e-04	k: 20	n:110000
C10orf71   110000 perm   32 sec   (3484 perm/sec)   p_kst 1.818182e-04   p_cons 6.947273e-01   p_joint 3.354545e-03

Joint ci ratio: 1.979189e-01	ci left: 2.935862e-03	ci right 3.588508e-03	k: 390	n:120000
Cons ci ratio: 7.501672e-03	ci left: 6.920855e-01	ci right 6.973051e-01	k: 83364	n:120000
KS ci ratio: 7.686888e-01	ci left: 1.348267e-04	ci right 3.075258e-04	k: 25	n:120000
C10orf71   120000 perm   35 sec   (3440 perm/sec)   p_kst 2.083333e-04   p_cons 6.947000e-01   p_joint 3.250000e-03

Joint ci ratio: 1.971865e-01	ci left: 2.731933e-03	ci right 3.336725e-03	k: 393	n:130000
Cons ci ratio: 7.060526e-03	ci left: 7.008702e-01	ci right 7.058438e-01	k: 91437	n:130000
KS ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
C10orf71   130000 perm   38 sec   (3395 perm/sec)   p_kst 2.000000e-04   p_cons 7.033615e-01   p_joint 3.023077e-03

Joint ci ratio: 1.919074e-01	ci left: 2.686278e-03	ci right 3.263184e-03	k: 415	n:140000
Cons ci ratio: 6.804116e-03	ci left: 7.009352e-01	ci right 7.057278e-01	k: 98467	n:140000
KS ci ratio: 7.156116e-01	ci left: 1.387311e-04	ci right 2.974783e-04	k: 29	n:140000
C10orf71   140000 perm   42 sec   (3353 perm/sec)   p_kst 2.071429e-04   p_cons 7.033357e-01   p_joint 2.964286e-03

Joint ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
Cons ci ratio: 6.567770e-03	ci left: 7.013753e-01	ci right 7.060035e-01	k: 105554	n:150000
KS ci ratio: 6.928884e-01	ci left: 1.404242e-04	ci right 2.933341e-04	k: 31	n:150000
C10orf71   150000 perm   45 sec   (3311 perm/sec)   p_kst 2.066667e-04   p_cons 7.036933e-01   p_joint 2.860000e-03

Joint ci ratio: 1.831072e-01	ci left: 2.594709e-03	ci right 3.123561e-03	k: 456	n:160000
Cons ci ratio: 6.354541e-03	ci left: 7.017564e-01	ci right 7.062362e-01	k: 112640	n:160000
KS ci ratio: 6.722009e-01	ci left: 1.419771e-04	ci right 2.896396e-04	k: 33	n:160000
C10orf71   160000 perm   49 sec   (3268 perm/sec)   p_kst 2.062500e-04   p_cons 7.040000e-01   p_joint 2.850000e-03

Joint ci ratio: 1.872773e-01	ci left: 2.329855e-03	ci right 2.816767e-03	k: 436	n:170000
Cons ci ratio: 6.172208e-03	ci left: 7.013226e-01	ci right 7.056705e-01	k: 119595	n:170000
KS ci ratio: 6.532622e-01	ci left: 1.434087e-04	ci right 2.863210e-04	k: 35	n:170000
C10orf71   170000 perm   53 sec   (3226 perm/sec)   p_kst 2.058824e-04   p_cons 7.035000e-01   p_joint 2.564706e-03

Joint ci ratio: 1.821402e-01	ci left: 2.332887e-03	ci right 2.805583e-03	k: 461	n:180000
Cons ci ratio: 5.997750e-03	ci left: 7.014231e-01	ci right 7.056482e-01	k: 126637	n:180000
KS ci ratio: 6.197358e-01	ci left: 1.540756e-04	ci right 2.961787e-04	k: 39	n:180000
C10orf71   180000 perm   57 sec   (3185 perm/sec)   p_kst 2.166667e-04   p_cons 7.035389e-01   p_joint 2.561111e-03

Joint ci ratio: 1.809783e-01	ci left: 2.240237e-03	ci right 2.690947e-03	k: 467	n:190000
Cons ci ratio: 5.840683e-03	ci left: 7.012719e-01	ci right 7.053850e-01	k: 133633	n:190000
KS ci ratio: 6.121335e-01	ci left: 1.504072e-04	ci right 2.866662e-04	k: 40	n:190000
C10orf71   190000 perm   60 sec   (3146 perm/sec)   p_kst 2.105263e-04   p_cons 7.033316e-01   p_joint 2.457895e-03

Joint ci ratio: 1.779656e-01	ci left: 2.204628e-03	ci right 2.639994e-03	k: 483	n:200000
Cons ci ratio: 5.691111e-03	ci left: 7.014479e-01	ci right 7.054562e-01	k: 140691	n:200000
KS ci ratio: 6.048041e-01	ci left: 1.471154e-04	ci right 2.780955e-04	k: 41	n:200000
C10orf71   200000 perm   64 sec   (3107 perm/sec)   p_kst 2.050000e-04   p_cons 7.034550e-01   p_joint 2.415000e-03

Joint ci ratio: 1.761612e-01	ci left: 2.145148e-03	ci right 2.564016e-03	k: 493	n:210000
Cons ci ratio: 5.553548e-03	ci left: 7.015271e-01	ci right 7.054387e-01	k: 147732	n:210000
KS ci ratio: 5.842951e-01	ci left: 1.522443e-04	ci right 2.812658e-04	k: 44	n:210000
C10orf71   210000 perm   68 sec   (3069 perm/sec)   p_kst 2.095238e-04   p_cons 7.034857e-01   p_joint 2.347619e-03

Joint ci ratio: 1.798571e-01	ci left: 1.960765e-03	ci right 2.352537e-03	k: 473	n:220000
Cons ci ratio: 5.429225e-03	ci left: 7.013134e-01	ci right 7.051358e-01	k: 154710	n:220000
KS ci ratio: 5.717284e-01	ci left: 1.530848e-04	ci right 2.788882e-04	k: 46	n:220000
C10orf71   220000 perm   73 sec   (3033 perm/sec)   p_kst 2.090909e-04   p_cons 7.032273e-01   p_joint 2.150000e-03

Joint ci ratio: 1.761792e-01	ci left: 1.958597e-03	ci right 2.341080e-03	k: 493	n:230000
Cons ci ratio: 5.306307e-03	ci left: 7.016375e-01	ci right 7.053748e-01	k: 161807	n:230000
KS ci ratio: 5.599391e-01	ci left: 1.538796e-04	ci right 2.766907e-04	k: 48	n:230000
C10orf71   230000 perm   77 sec   (2996 perm/sec)   p_kst 2.086957e-04   p_cons 7.035087e-01   p_joint 2.143478e-03

Joint ci ratio: 1.931933e-01	ci left: 1.547077e-03	ci right 1.881808e-03	k: 410	n:240000
Cons ci ratio: 5.198532e-03	ci left: 7.013594e-01	ci right 7.050190e-01	k: 168766	n:240000
KS ci ratio: 5.599417e-01	ci left: 1.474678e-04	ci right 2.651623e-04	k: 48	n:240000
C10orf71   240000 perm   81 sec   (2959 perm/sec)   p_kst 2.000000e-04   p_cons 7.031917e-01   p_joint 1.708333e-03

Joint ci ratio: 1.895396e-01	ci left: 1.546128e-03	ci right 1.873598e-03	k: 426	n:250000
Cons ci ratio: 5.092862e-03	ci left: 7.014489e-01	ci right 7.050344e-01	k: 175811	n:250000
KS ci ratio: 5.543152e-01	ci left: 1.450053e-04	ci right 2.591142e-04	k: 49	n:250000
C10orf71   250000 perm   85 sec   (2926 perm/sec)   p_kst 1.960000e-04   p_cons 7.032440e-01   p_joint 1.704000e-03

Joint ci ratio: 1.988589e-01	ci left: 1.343936e-03	ci right 1.644276e-03	k: 387	n:260000
Cons ci ratio: 4.995225e-03	ci left: 7.013781e-01	ci right 7.048943e-01	k: 182816	n:260000
KS ci ratio: 5.383975e-01	ci left: 1.493731e-04	ci right 2.622652e-04	k: 52	n:260000
C10orf71   260000 perm   90 sec   (2891 perm/sec)   p_kst 2.000000e-04   p_cons 7.031385e-01   p_joint 1.488462e-03

Joint ci ratio: 1.988644e-01	ci left: 1.294157e-03	ci right 1.583381e-03	k: 387	n:270000
Cons ci ratio: 4.902344e-03	ci left: 7.013689e-01	ci right 7.048193e-01	k: 189836	n:270000
KS ci ratio: 5.237767e-01	ci left: 1.534611e-04	ci right 2.651402e-04	k: 55	n:270000
C10orf71   270000 perm   94 sec   (2858 perm/sec)   p_kst 2.037037e-04   p_cons 7.030963e-01   p_joint 1.433333e-03

Joint ci ratio: 1.973474e-01	ci left: 1.268301e-03	ci right 1.549324e-03	k: 393	n:280000
Cons ci ratio: 4.814416e-03	ci left: 7.013644e-01	ci right 7.047528e-01	k: 196857	n:280000
KS ci ratio: 5.191629e-01	ci left: 1.510813e-04	ci right 2.597089e-04	k: 56	n:280000
C10orf71   280000 perm   99 sec   (2828 perm/sec)   p_kst 2.000000e-04   p_cons 7.030607e-01   p_joint 1.403571e-03

Joint ci ratio: 1.963566e-01	ci left: 1.237678e-03	ci right 1.510374e-03	k: 397	n:290000
Cons ci ratio: 4.729494e-03	ci left: 7.014990e-01	ci right 7.048280e-01	k: 203918	n:290000
KS ci ratio: 5.191648e-01	ci left: 1.458715e-04	ci right 2.507537e-04	k: 56	n:290000
C10orf71   290000 perm   104 sec   (2799 perm/sec)   p_kst 1.931034e-04   p_cons 7.031655e-01   p_joint 1.368966e-03

Joint ci ratio: 1.932265e-01	ci left: 1.237642e-03	ci right 1.505472e-03	k: 410	n:300000
Cons ci ratio: 4.651511e-03	ci left: 7.013913e-01	ci right 7.046647e-01	k: 210909	n:300000
KS ci ratio: 5.146706e-01	ci left: 1.439072e-04	ci right 2.461601e-04	k: 57	n:300000
C10orf71   300000 perm   108 sec   (2771 perm/sec)   p_kst 1.900000e-04   p_cons 7.030300e-01   p_joint 1.366667e-03

Joint ci ratio: 1.948999e-01	ci left: 1.176231e-03	ci right 1.433237e-03	k: 403	n:310000
Cons ci ratio: 4.575847e-03	ci left: 7.014203e-01	ci right 7.046404e-01	k: 217940	n:310000
KS ci ratio: 5.146722e-01	ci left: 1.392650e-04	ci right 2.382197e-04	k: 57	n:310000
C10orf71   310000 perm   113 sec   (2743 perm/sec)   p_kst 1.838710e-04   p_cons 7.030323e-01   p_joint 1.300000e-03

Joint ci ratio: 2.045046e-01	ci left: 1.029619e-03	ci right 1.267064e-03	k: 366	n:320000
Cons ci ratio: 4.506153e-03	ci left: 7.012256e-01	ci right 7.043957e-01	k: 224900	n:320000
KS ci ratio: 5.060216e-01	ci left: 1.403577e-04	ci right 2.378240e-04	k: 59	n:320000
C10orf71   320000 perm   118 sec   (2716 perm/sec)   p_kst 1.843750e-04   p_cons 7.028125e-01   p_joint 1.143750e-03

Joint ci ratio: 2.064891e-01	ci left: 9.782946e-04	ci right 1.206370e-03	k: 359	n:330000
Cons ci ratio: 4.626535e-03	ci left: 6.834939e-01	ci right 6.866665e-01	k: 226077	n:330000
KS ci ratio: 5.018574e-01	ci left: 1.387492e-04	ci right 2.340299e-04	k: 60	n:330000
C10orf71   330000 perm   123 sec   (2687 perm/sec)   p_kst 1.818182e-04   p_cons 6.850818e-01   p_joint 1.087879e-03

Joint ci ratio: 2.094246e-01	ci left: 9.216382e-04	ci right 1.139951e-03	k: 349	n:340000
Cons ci ratio: 4.556773e-03	ci left: 6.836329e-01	ci right 6.867581e-01	k: 232967	n:340000
KS ci ratio: 4.938271e-01	ci left: 1.398117e-04	ci right 2.337622e-04	k: 62	n:340000
C10orf71   340000 perm   128 sec   (2659 perm/sec)   p_kst 1.823529e-04   p_cons 6.851971e-01   p_joint 1.026471e-03

Joint ci ratio: 2.062091e-01	ci left: 9.250989e-04	ci right 1.140443e-03	k: 360	n:350000
Cons ci ratio: 4.492156e-03	ci left: 6.835640e-01	ci right 6.866444e-01	k: 239787	n:350000
KS ci ratio: 4.899545e-01	ci left: 1.383196e-04	ci right 2.302924e-04	k: 63	n:350000
C10orf71   350000 perm   133 sec   (2632 perm/sec)   p_kst 1.800000e-04   p_cons 6.851057e-01   p_joint 1.028571e-03

Joint ci ratio: 2.036861e-01	ci left: 9.231187e-04	ci right 1.135045e-03	k: 369	n:360000
Cons ci ratio: 4.428729e-03	ci left: 6.836438e-01	ci right 6.866810e-01	k: 246659	n:360000
KS ci ratio: 4.788590e-01	ci left: 1.417927e-04	ci right 2.332391e-04	k: 66	n:360000
C10orf71   360000 perm   138 sec   (2607 perm/sec)   p_kst 1.833333e-04   p_cons 6.851639e-01   p_joint 1.025000e-03

Joint ci ratio: 2.015198e-01	ci left: 9.186940e-04	ci right 1.127085e-03	k: 377	n:370000
Cons ci ratio: 4.369255e-03	ci left: 6.835871e-01	ci right 6.865830e-01	k: 253482	n:370000
KS ci ratio: 4.753255e-01	ci left: 1.403380e-04	ci right 2.299610e-04	k: 67	n:370000
C10orf71   370000 perm   143 sec   (2582 perm/sec)   p_kst 1.810811e-04   p_cons 6.850865e-01   p_joint 1.018919e-03

Joint ci ratio: 2.012562e-01	ci left: 8.970157e-04	ci right 1.100191e-03	k: 378	n:380000
Cons ci ratio: 4.309853e-03	ci left: 6.837601e-01	ci right 6.867160e-01	k: 260391	n:380000
KS ci ratio: 4.753267e-01	ci left: 1.366448e-04	ci right 2.239095e-04	k: 67	n:380000
C10orf71   380000 perm   149 sec   (2557 perm/sec)   p_kst 1.763158e-04   p_cons 6.852395e-01   p_joint 9.947368e-04

Joint ci ratio: 1.989086e-01	ci left: 8.959361e-04	ci right 1.096212e-03	k: 387	n:390000
Cons ci ratio: 4.255337e-03	ci left: 6.836679e-01	ci right 6.865858e-01	k: 267200	n:390000
KS ci ratio: 4.718702e-01	ci left: 1.353990e-04	ci right 2.210364e-04	k: 68	n:390000
C10orf71   390000 perm   154 sec   (2532 perm/sec)   p_kst 1.743590e-04   p_cons 6.851282e-01   p_joint 9.923077e-04

Joint ci ratio: 1.973892e-01	ci left: 8.877932e-04	ci right 1.084551e-03	k: 393	n:400000
Cons ci ratio: 4.202230e-03	ci left: 6.836430e-01	ci right 6.865243e-01	k: 274034	n:400000
KS ci ratio: 4.651765e-01	ci left: 1.364235e-04	ci right 2.210969e-04	k: 70	n:400000
C10orf71   400000 perm   160 sec   (2507 perm/sec)   p_kst 1.750000e-04   p_cons 6.850850e-01   p_joint 9.825000e-04

Joint ci ratio: 1.944497e-01	ci left: 8.939726e-04	ci right 1.088800e-03	k: 405	n:410000
Cons ci ratio: 4.149936e-03	ci left: 6.837368e-01	ci right 6.865825e-01	k: 280916	n:410000
KS ci ratio: 4.556491e-01	ci left: 1.395643e-04	ci right 2.238645e-04	k: 73	n:410000
C10orf71   410000 perm   165 sec   (2483 perm/sec)   p_kst 1.780488e-04   p_cons 6.851610e-01   p_joint 9.878049e-04

Joint ci ratio: 1.944520e-01	ci left: 8.726866e-04	ci right 1.062878e-03	k: 405	n:420000
Cons ci ratio: 4.098619e-03	ci left: 6.839241e-01	ci right 6.867353e-01	k: 287839	n:420000
KS ci ratio: 4.556501e-01	ci left: 1.362413e-04	ci right 2.185345e-04	k: 73	n:420000
C10orf71   420000 perm   171 sec   (2460 perm/sec)   p_kst 1.738095e-04   p_cons 6.853310e-01   p_joint 9.642857e-04

Joint ci ratio: 3.312461e-01	ci left: 2.717592e-04	ci right 3.816697e-04	k: 139	n:430000
Cons ci ratio: 4.050906e-03	ci left: 6.839165e-01	ci right 6.866949e-01	k: 294682	n:430000
KS ci ratio: 4.409934e-01	ci left: 1.433881e-04	ci right 2.263845e-04	k: 78	n:430000
C10orf71   430000 perm   176 sec   (2438 perm/sec)   p_kst 1.813953e-04   p_cons 6.853070e-01   p_joint 3.232558e-04

Joint ci ratio: 3.324372e-01	ci left: 2.634993e-04	ci right 3.705343e-04	k: 138	n:440000
Cons ci ratio: 4.004568e-03	ci left: 6.839368e-01	ci right 6.866834e-01	k: 301537	n:440000
KS ci ratio: 4.409944e-01	ci left: 1.401292e-04	ci right 2.212395e-04	k: 78	n:440000
C10orf71   440000 perm   182 sec   (2416 perm/sec)   p_kst 1.772727e-04   p_cons 6.853114e-01   p_joint 3.136364e-04

Joint ci ratio: 3.254855e-01	ci left: 2.698763e-04	ci right 3.767305e-04	k: 144	n:450000
Cons ci ratio: 3.961213e-03	ci left: 6.838007e-01	ci right 6.865169e-01	k: 308322	n:450000
KS ci ratio: 4.276667e-01	ci left: 1.469116e-04	ci right 2.286416e-04	k: 83	n:450000
C10orf71   450000 perm   188 sec   (2395 perm/sec)   p_kst 1.844444e-04   p_cons 6.851600e-01   p_joint 3.200000e-04

Joint ci ratio: 3.243697e-01	ci left: 2.660059e-04	ci right 3.708914e-04	k: 145	n:460000
Cons ci ratio: 3.918247e-03	ci left: 6.837794e-01	ci right 6.864661e-01	k: 315157	n:460000
KS ci ratio: 4.226645e-01	ci left: 1.476004e-04	ci right 2.284816e-04	k: 85	n:460000
C10orf71   460000 perm   194 sec   (2372 perm/sec)   p_kst 1.847826e-04   p_cons 6.851239e-01   p_joint 3.152174e-04

Joint ci ratio: 3.373311e-01	ci left: 2.388845e-04	ci right 3.376605e-04	k: 134	n:470000
Cons ci ratio: 3.875962e-03	ci left: 6.838359e-01	ci right 6.864937e-01	k: 322028	n:470000
KS ci ratio: 4.178338e-01	ci left: 1.482652e-04	ci right 2.283231e-04	k: 87	n:470000
C10orf71   470000 perm   200 sec   (2351 perm/sec)   p_kst 1.851064e-04   p_cons 6.851660e-01   p_joint 2.851064e-04

Joint ci ratio: 3.312518e-01	ci left: 2.434503e-04	ci right 3.419135e-04	k: 139	n:480000
Cons ci ratio: 3.837128e-03	ci left: 6.836525e-01	ci right 6.862828e-01	k: 328785	n:480000
KS ci ratio: 4.131651e-01	ci left: 1.489074e-04	ci right 2.281663e-04	k: 89	n:480000
C10orf71   480000 perm   206 sec   (2330 perm/sec)   p_kst 1.854167e-04   p_cons 6.849688e-01   p_joint 2.895833e-04

Joint ci ratio: 3.243728e-01	ci left: 2.497195e-04	ci right 3.481844e-04	k: 145	n:490000
Cons ci ratio: 3.797084e-03	ci left: 6.837443e-01	ci right 6.863474e-01	k: 335673	n:490000
KS ci ratio: 4.042779e-01	ci left: 1.531924e-04	ci right 2.325079e-04	k: 93	n:490000
C10orf71   490000 perm   212 sec   (2309 perm/sec)   p_kst 1.897959e-04   p_cons 6.850469e-01   p_joint 2.959184e-04

Joint ci ratio: 1.974087e-01	ci left: 7.102280e-04	ci right 8.676495e-04	k: 393	n:500000
Cons ci ratio: 3.758442e-03	ci left: 6.838125e-01	ci right 6.863894e-01	k: 342551	n:500000
KS ci ratio: 3.979767e-01	ci left: 1.555233e-04	ci right 2.344599e-04	k: 96	n:500000
C10orf71   500000 perm   218 sec   (2290 perm/sec)   p_kst 1.920000e-04   p_cons 6.851020e-01   p_joint 7.860000e-04

Joint ci ratio: 1.979136e-01	ci left: 6.925738e-04	ci right 8.465223e-04	k: 391	n:510000
Cons ci ratio: 3.720093e-03	ci left: 6.839783e-01	ci right 6.865294e-01	k: 349480	n:510000
KS ci ratio: 3.880986e-01	ci left: 1.613090e-04	ci right 2.406305e-04	k: 101	n:510000
C10orf71   510000 perm   225 sec   (2269 perm/sec)   p_kst 1.980392e-04   p_cons 6.852549e-01   p_joint 7.666667e-04

Joint ci ratio: 1.949513e-01	ci left: 7.011974e-04	ci right 8.544530e-04	k: 403	n:520000
Cons ci ratio: 3.684619e-03	ci left: 6.839357e-01	ci right 6.864623e-01	k: 356304	n:520000
KS ci ratio: 3.843488e-01	ci left: 1.616796e-04	ci right 2.402208e-04	k: 103	n:520000
C10orf71   520000 perm   231 sec   (2250 perm/sec)   p_kst 1.980769e-04   p_cons 6.852000e-01   p_joint 7.750000e-04

Joint ci ratio: 1.939940e-01	ci left: 6.951468e-04	ci right 8.462457e-04	k: 407	n:530000
Cons ci ratio: 3.649788e-03	ci left: 6.839364e-01	ci right 6.864390e-01	k: 363150	n:530000
KS ci ratio: 3.737182e-01	ci left: 1.688715e-04	ci right 2.480824e-04	k: 109	n:530000
C10orf71   530000 perm   238 sec   (2231 perm/sec)   p_kst 2.056604e-04   p_cons 6.851887e-01   p_joint 7.679245e-04

Joint ci ratio: 1.930507e-01	ci left: 6.893220e-04	ci right 8.383407e-04	k: 411	n:540000
Cons ci ratio: 3.614841e-03	ci left: 6.840669e-01	ci right 6.865460e-01	k: 370066	n:540000
KS ci ratio: 3.737189e-01	ci left: 1.657442e-04	ci right 2.434883e-04	k: 109	n:540000
C10orf71   540000 perm   244 sec   (2212 perm/sec)   p_kst 2.018519e-04   p_cons 6.853074e-01   p_joint 7.611111e-04

Joint ci ratio: 1.907492e-01	ci left: 6.940974e-04	ci right 8.421522e-04	k: 421	n:550000
Cons ci ratio: 3.582373e-03	ci left: 6.840126e-01	ci right 6.864691e-01	k: 376883	n:550000
KS ci ratio: 3.720320e-01	ci left: 1.643785e-04	ci right 2.410491e-04	k: 110	n:550000
C10orf71   550000 perm   251 sec   (2194 perm/sec)   p_kst 2.000000e-04   p_cons 6.852418e-01   p_joint 7.654545e-04

Joint ci ratio: 1.971669e-01	ci left: 6.358272e-04	ci right 7.765642e-04	k: 394	n:560000
Cons ci ratio: 3.549676e-03	ci left: 6.840926e-01	ci right 6.865269e-01	k: 383774	n:560000
KS ci ratio: 3.639248e-01	ci left: 1.695463e-04	ci right 2.464951e-04	k: 115	n:560000
C10orf71   560000 perm   257 sec   (2176 perm/sec)   p_kst 2.053571e-04   p_cons 6.853107e-01   p_joint 7.035714e-04

Joint ci ratio: 1.999741e-01	ci left: 6.063325e-04	ci right 7.426851e-04	k: 383	n:570000
Cons ci ratio: 3.517215e-03	ci left: 6.842489e-01	ci right 6.866615e-01	k: 390710	n:570000
KS ci ratio: 3.608276e-01	ci left: 1.697611e-04	ci right 2.459975e-04	k: 117	n:570000
C10orf71   570000 perm   264 sec   (2158 perm/sec)   p_kst 2.052632e-04   p_cons 6.854561e-01   p_joint 6.719298e-04

Joint ci ratio: 2.103735e-01	ci left: 5.353586e-04	ci right 6.628191e-04	k: 346	n:580000
Cons ci ratio: 3.486464e-03	ci left: 6.842964e-01	ci right 6.866880e-01	k: 397586	n:580000
KS ci ratio: 3.608282e-01	ci left: 1.668341e-04	ci right 2.417562e-04	k: 117	n:580000
C10orf71   580000 perm   271 sec   (2141 perm/sec)   p_kst 2.017241e-04   p_cons 6.854931e-01   p_joint 5.965517e-04

Joint ci ratio: 2.115984e-01	ci left: 5.198628e-04	ci right 6.444481e-04	k: 342	n:590000
Cons ci ratio: 3.457510e-03	ci left: 6.842168e-01	ci right 6.865882e-01	k: 404388	n:590000
KS ci ratio: 3.608289e-01	ci left: 1.640064e-04	ci right 2.376588e-04	k: 117	n:590000
C10orf71   590000 perm   278 sec   (2124 perm/sec)   p_kst 1.983051e-04   p_cons 6.854034e-01   p_joint 5.796610e-04

Joint ci ratio: 2.100729e-01	ci left: 5.190918e-04	ci right 6.424800e-04	k: 347	n:600000
Cons ci ratio: 3.429690e-03	ci left: 6.840865e-01	ci right 6.864384e-01	k: 411158	n:600000
KS ci ratio: 3.563274e-01	ci left: 1.658226e-04	ci right 2.391463e-04	k: 120	n:600000
C10orf71   600000 perm   285 sec   (2107 perm/sec)   p_kst 2.000000e-04   p_cons 6.852633e-01   p_joint 5.783333e-04

Joint ci ratio: 2.097726e-01	ci left: 5.121350e-04	ci right 6.336733e-04	k: 348	n:610000
Cons ci ratio: 3.401315e-03	ci left: 6.841149e-01	ci right 6.864473e-01	k: 418022	n:610000
KS ci ratio: 3.505792e-01	ci left: 1.690794e-04	ci right 2.423630e-04	k: 124	n:610000
C10orf71   610000 perm   292 sec   (2090 perm/sec)   p_kst 2.032787e-04   p_cons 6.852820e-01   p_joint 5.704918e-04

Joint ci ratio: 2.082860e-01	ci left: 5.115172e-04	ci right 6.319388e-04	k: 353	n:620000
Cons ci ratio: 3.374453e-03	ci left: 6.840374e-01	ci right 6.863512e-01	k: 424821	n:620000
KS ci ratio: 3.478078e-01	ci left: 1.692953e-04	ci right 2.419615e-04	k: 126	n:620000
C10orf71   620000 perm   299 sec   (2074 perm/sec)   p_kst 2.032258e-04   p_cons 6.851952e-01   p_joint 5.693548e-04

Joint ci ratio: 2.065429e-01	ci left: 5.124270e-04	ci right 6.319258e-04	k: 359	n:630000
Cons ci ratio: 3.347896e-03	ci left: 6.840038e-01	ci right 6.862992e-01	k: 431646	n:630000
KS ci ratio: 3.451011e-01	ci left: 1.695064e-04	ci right 2.415706e-04	k: 128	n:630000
C10orf71   630000 perm   306 sec   (2057 perm/sec)   p_kst 2.031746e-04   p_cons 6.851524e-01   p_joint 5.698413e-04

Joint ci ratio: 2.042852e-01	ci left: 5.162775e-04	ci right 6.351939e-04	k: 367	n:640000
Cons ci ratio: 3.321211e-03	ci left: 6.840684e-01	ci right 6.863456e-01	k: 438533	n:640000
KS ci ratio: 3.398715e-01	ci left: 1.725704e-04	ci right 2.445815e-04	k: 132	n:640000
C10orf71   640000 perm   314 sec   (2041 perm/sec)   p_kst 2.062500e-04   p_cons 6.852078e-01   p_joint 5.734375e-04

Joint ci ratio: 2.026399e-01	ci left: 5.170953e-04	ci right 6.351220e-04	k: 373	n:650000
Cons ci ratio: 3.296035e-03	ci left: 6.840154e-01	ci right 6.862752e-01	k: 445345	n:650000
KS ci ratio: 3.386013e-01	ci left: 1.713229e-04	ci right 2.424878e-04	k: 133	n:650000
C10orf71   650000 perm   321 sec   (2025 perm/sec)   p_kst 2.046154e-04   p_cons 6.851462e-01   p_joint 5.738462e-04

Joint ci ratio: 1.999833e-01	ci left: 5.236485e-04	ci right 6.414130e-04	k: 383	n:660000
Cons ci ratio: 3.272044e-03	ci left: 6.838823e-01	ci right 6.861252e-01	k: 452103	n:660000
KS ci ratio: 3.336574e-01	ci left: 1.742763e-04	ci right 2.453839e-04	k: 137	n:660000
C10orf71   660000 perm   328 sec   (2009 perm/sec)   p_kst 2.075758e-04   p_cons 6.850045e-01   p_joint 5.803030e-04

Joint ci ratio: 2.007704e-01	ci left: 5.115796e-04	ci right 6.271381e-04	k: 380	n:670000
Cons ci ratio: 3.246872e-03	ci left: 6.839788e-01	ci right 6.862047e-01	k: 459012	n:670000
KS ci ratio: 3.312656e-01	ci left: 1.744111e-04	ci right 2.449547e-04	k: 139	n:670000
C10orf71   670000 perm   336 sec   (1994 perm/sec)   p_kst 2.074627e-04   p_cons 6.850925e-01   p_joint 5.671642e-04

Joint ci ratio: 1.520511e-01	ci left: 9.022190e-04	ci right 1.052085e-03	k: 663	n:680000
Cons ci ratio: 3.223348e-03	ci left: 6.839283e-01	ci right 6.861378e-01	k: 465823	n:680000
KS ci ratio: 3.255033e-01	ci left: 1.785932e-04	ci right 2.493093e-04	k: 144	n:680000
C10orf71   680000 perm   344 sec   (1979 perm/sec)   p_kst 2.117647e-04   p_cons 6.850338e-01   p_joint 9.750000e-04

Joint ci ratio: 1.506952e-01	ci left: 9.058761e-04	ci right 1.054886e-03	k: 675	n:690000
Cons ci ratio: 3.199210e-03	ci left: 6.840301e-01	ci right 6.862234e-01	k: 472738	n:690000
KS ci ratio: 3.221872e-01	ci left: 1.799993e-04	ci right 2.503961e-04	k: 147	n:690000
C10orf71   690000 perm   351 sec   (1965 perm/sec)   p_kst 2.130435e-04   p_cons 6.851275e-01   p_joint 9.782609e-04

Joint ci ratio: 1.497021e-01	ci left: 9.053089e-04	ci right 1.053157e-03	k: 684	n:700000
Cons ci ratio: 3.175280e-03	ci left: 6.841734e-01	ci right 6.863507e-01	k: 479684	n:700000
KS ci ratio: 3.189704e-01	ci left: 1.813688e-04	ci right 2.514484e-04	k: 150	n:700000
C10orf71   700000 perm   359 sec   (1951 perm/sec)   p_kst 2.142857e-04   p_cons 6.852629e-01   p_joint 9.771429e-04

Joint ci ratio: 1.486212e-01	ci left: 9.061170e-04	ci right 1.052933e-03	k: 694	n:710000
Cons ci ratio: 3.152290e-03	ci left: 6.842564e-01	ci right 6.864181e-01	k: 486590	n:710000
KS ci ratio: 3.158481e-01	ci left: 1.827031e-04	ci right 2.524677e-04	k: 153	n:710000
C10orf71   710000 perm   367 sec   (1937 perm/sec)   p_kst 2.154930e-04   p_cons 6.853380e-01   p_joint 9.774648e-04

Joint ci ratio: 1.485153e-01	ci left: 8.948689e-04	ci right 1.039750e-03	k: 695	n:720000
Cons ci ratio: 3.130770e-03	ci left: 6.842022e-01	ci right 6.863490e-01	k: 493399	n:720000
KS ci ratio: 3.108417e-01	ci left: 1.865641e-04	ci right 2.564498e-04	k: 158	n:720000
C10orf71   720000 perm   375 sec   (1922 perm/sec)   p_kst 2.194444e-04   p_cons 6.852764e-01   p_joint 9.652778e-04

Joint ci ratio: 1.471471e-01	ci left: 8.997601e-04	ci right 1.043973e-03	k: 708	n:730000
Cons ci ratio: 3.108263e-03	ci left: 6.843471e-01	ci right 6.864789e-01	k: 500352	n:730000
KS ci ratio: 3.079499e-01	ci left: 1.877990e-04	ci right 2.573644e-04	k: 161	n:730000
C10orf71   730000 perm   383 sec   (1908 perm/sec)   p_kst 2.205479e-04   p_cons 6.854137e-01   p_joint 9.698630e-04

Joint ci ratio: 1.491622e-01	ci left: 8.628760e-04	ci right 1.003240e-03	k: 689	n:740000
Cons ci ratio: 3.087743e-03	ci left: 6.842770e-01	ci right 6.863945e-01	k: 507149	n:740000
KS ci ratio: 3.060664e-01	ci left: 1.877557e-04	ci right 2.567968e-04	k: 163	n:740000
C10orf71   740000 perm   391 sec   (1894 perm/sec)   p_kst 2.202703e-04   p_cons 6.853365e-01   p_joint 9.310811e-04

Joint ci ratio: 1.479871e-01	ci left: 8.654925e-04	ci right 1.005075e-03	k: 700	n:750000
Cons ci ratio: 3.066703e-03	ci left: 6.843384e-01	ci right 6.864415e-01	k: 514043	n:750000
KS ci ratio: 3.051378e-01	ci left: 1.864834e-04	ci right 2.548081e-04	k: 164	n:750000
C10orf71   750000 perm   398 sec   (1882 perm/sec)   p_kst 2.186667e-04   p_cons 6.853907e-01   p_joint 9.333333e-04

Joint ci ratio: 1.471499e-01	ci left: 8.642421e-04	ci right 1.002765e-03	k: 708	n:760000
Cons ci ratio: 3.045847e-03	ci left: 6.844324e-01	ci right 6.865215e-01	k: 520963	n:760000
KS ci ratio: 3.033052e-01	ci left: 1.864604e-04	ci right 2.542872e-04	k: 166	n:760000
C10orf71   760000 perm   407 sec   (1869 perm/sec)   p_kst 2.184211e-04   p_cons 6.854776e-01   p_joint 9.315789e-04

Joint ci ratio: 1.457178e-01	ci left: 8.705340e-04	ci right 1.008589e-03	k: 722	n:770000
Cons ci ratio: 3.025792e-03	ci left: 6.844694e-01	ci right 6.865448e-01	k: 527841	n:770000
KS ci ratio: 3.015052e-01	ci left: 1.864392e-04	ci right 2.537787e-04	k: 168	n:770000
C10orf71   770000 perm   415 sec   (1856 perm/sec)   p_kst 2.181818e-04   p_cons 6.855078e-01   p_joint 9.376623e-04

Joint ci ratio: 1.450177e-01	ci left: 8.680212e-04	ci right 1.004960e-03	k: 729	n:780000
Cons ci ratio: 3.006593e-03	ci left: 6.844387e-01	ci right 6.865009e-01	k: 534667	n:780000
KS ci ratio: 2.988640e-01	ci left: 1.876055e-04	ci right 2.546600e-04	k: 171	n:780000
C10orf71   780000 perm   423 sec   (1843 perm/sec)   p_kst 2.192308e-04   p_cons 6.854705e-01   p_joint 9.346154e-04

Joint ci ratio: 1.441320e-01	ci left: 8.680139e-04	ci right 1.004043e-03	k: 738	n:790000
Cons ci ratio: 2.987457e-03	ci left: 6.844520e-01	ci right 6.865011e-01	k: 541527	n:790000
KS ci ratio: 2.954480e-01	ci left: 1.899166e-04	ci right 2.568761e-04	k: 175	n:790000
C10orf71   790000 perm   432 sec   (1831 perm/sec)   p_kst 2.215190e-04   p_cons 6.854772e-01   p_joint 9.341772e-04

Joint ci ratio: 1.460239e-01	ci left: 8.342747e-04	ci right 9.668820e-04	k: 719	n:800000
Cons ci ratio: 2.968312e-03	ci left: 6.845188e-01	ci right 6.865549e-01	k: 548430	n:800000
KS ci ratio: 2.937835e-01	ci left: 1.898579e-04	ci right 2.563493e-04	k: 177	n:800000
C10orf71   800000 perm   440 sec   (1817 perm/sec)   p_kst 2.212500e-04   p_cons 6.855375e-01   p_joint 8.987500e-04

Joint ci ratio: 1.453194e-01	ci left: 8.323020e-04	ci right 9.639020e-04	k: 726	n:810000
Cons ci ratio: 2.949175e-03	ci left: 6.846358e-01	ci right 6.866591e-01	k: 555375	n:810000
KS ci ratio: 2.913386e-01	ci left: 1.909460e-04	ci right 2.571592e-04	k: 180	n:810000
C10orf71   810000 perm   449 sec   (1804 perm/sec)   p_kst 2.222222e-04   p_cons 6.856481e-01   p_joint 8.962963e-04

Joint ci ratio: 1.462289e-01	ci left: 8.115760e-04	ci right 9.407723e-04	k: 717	n:820000
Cons ci ratio: 2.930718e-03	ci left: 6.847037e-01	ci right 6.867145e-01	k: 562282	n:820000
KS ci ratio: 2.889536e-01	ci left: 1.920097e-04	ci right 2.579472e-04	k: 183	n:820000
C10orf71   820000 perm   458 sec   (1791 perm/sec)   p_kst 2.231707e-04   p_cons 6.857098e-01   p_joint 8.743902e-04

Joint ci ratio: 1.458237e-01	ci left: 8.064410e-04	ci right 9.344331e-04	k: 721	n:830000
Cons ci ratio: 2.913157e-03	ci left: 6.846880e-01	ci right 6.866866e-01	k: 569121	n:830000
KS ci ratio: 2.881718e-01	ci left: 1.908139e-04	ci right 2.561312e-04	k: 184	n:830000
C10orf71   830000 perm   466 sec   (1779 perm/sec)   p_kst 2.216867e-04   p_cons 6.856880e-01   p_joint 8.686747e-04

Joint ci ratio: 1.452218e-01	ci left: 8.037232e-04	ci right 9.307118e-04	k: 727	n:840000
Cons ci ratio: 2.895476e-03	ci left: 6.847370e-01	ci right 6.867236e-01	k: 576014	n:840000
KS ci ratio: 2.881722e-01	ci left: 1.885423e-04	ci right 2.530821e-04	k: 184	n:840000
C10orf71   840000 perm   475 sec   (1768 perm/sec)   p_kst 2.190476e-04   p_cons 6.857310e-01   p_joint 8.654762e-04

Joint ci ratio: 1.444305e-01	ci left: 8.033384e-04	ci right 9.295148e-04	k: 735	n:850000
Cons ci ratio: 2.879095e-03	ci left: 6.846377e-01	ci right 6.866128e-01	k: 582782	n:850000
KS ci ratio: 2.873967e-01	ci left: 1.874157e-04	ci right 2.513658e-04	k: 185	n:850000
C10orf71   850000 perm   484 sec   (1756 perm/sec)   p_kst 2.176471e-04   p_cons 6.856259e-01   p_joint 8.647059e-04

Joint ci ratio: 1.440400e-01	ci left: 7.984804e-04	ci right 9.235256e-04	k: 739	n:860000
Cons ci ratio: 2.861885e-03	ci left: 6.847072e-01	ci right 6.866707e-01	k: 589693	n:860000
KS ci ratio: 2.858640e-01	ci left: 1.873949e-04	ci right 2.509353e-04	k: 187	n:860000
C10orf71   860000 perm   493 sec   (1744 perm/sec)   p_kst 2.174419e-04   p_cons 6.856895e-01   p_joint 8.593023e-04

Joint ci ratio: 1.429810e-01	ci left: 8.014922e-04	ci right 9.260076e-04	k: 750	n:870000
Cons ci ratio: 2.845685e-03	ci left: 6.846681e-01	ci right 6.866203e-01	k: 596511	n:870000
KS ci ratio: 2.836099e-01	ci left: 1.884430e-04	ci right 2.517448e-04	k: 190	n:870000
C10orf71   870000 perm   502 sec   (1732 perm/sec)   p_kst 2.183908e-04   p_cons 6.856448e-01   p_joint 8.620690e-04

Joint ci ratio: 1.426967e-01	ci left: 7.956715e-04	ci right 9.190158e-04	k: 753	n:880000
Cons ci ratio: 2.829570e-03	ci left: 6.846584e-01	ci right 6.865995e-01	k: 603354	n:880000
KS ci ratio: 2.814084e-01	ci left: 1.894692e-04	ci right 2.525340e-04	k: 193	n:880000
C10orf71   880000 perm   511 sec   (1721 perm/sec)   p_kst 2.193182e-04   p_cons 6.856295e-01   p_joint 8.556818e-04

Joint ci ratio: 1.415743e-01	ci left: 7.997351e-04	ci right 9.226520e-04	k: 765	n:890000
Cons ci ratio: 2.814130e-03	ci left: 6.845870e-01	ci right 6.865174e-01	k: 610142	n:890000
KS ci ratio: 2.792574e-01	ci left: 1.904742e-04	ci right 2.533036e-04	k: 196	n:890000
C10orf71   890000 perm   520 sec   (1710 perm/sec)   p_kst 2.202247e-04   p_cons 6.855528e-01   p_joint 8.595506e-04

Joint ci ratio: 1.419464e-01	ci left: 7.865620e-04	ci right 9.077988e-04	k: 761	n:900000
Cons ci ratio: 2.798196e-03	ci left: 6.846319e-01	ci right 6.865514e-01	k: 617033	n:900000
KS ci ratio: 2.778506e-01	ci left: 1.904248e-04	ci right 2.528662e-04	k: 198	n:900000
C10orf71   900000 perm   530 sec   (1699 perm/sec)   p_kst 2.200000e-04   p_cons 6.855922e-01   p_joint 8.455556e-04

Joint ci ratio: 1.424155e-01	ci left: 7.726190e-04	ci right 8.921336e-04	k: 756	n:910000
Cons ci ratio: 2.782467e-03	ci left: 6.846857e-01	ci right 6.865945e-01	k: 623933	n:910000
KS ci ratio: 2.764648e-01	ci left: 1.903773e-04	ci right 2.524376e-04	k: 200	n:910000
C10orf71   910000 perm   539 sec   (1688 perm/sec)   p_kst 2.197802e-04   p_cons 6.856407e-01   p_joint 8.307692e-04

Joint ci ratio: 1.417616e-01	ci left: 7.715591e-04	ci right 8.903156e-04	k: 763	n:920000
Cons ci ratio: 2.767809e-03	ci left: 6.846121e-01	ci right 6.865106e-01	k: 630717	n:920000
KS ci ratio: 2.744243e-01	ci left: 1.913437e-04	ci right 2.531792e-04	k: 203	n:920000
C10orf71   920000 perm   548 sec   (1678 perm/sec)   p_kst 2.206522e-04   p_cons 6.855620e-01   p_joint 8.293478e-04

Joint ci ratio: 1.408428e-01	ci left: 7.736354e-04	ci right 8.918748e-04	k: 773	n:930000
Cons ci ratio: 2.753077e-03	ci left: 6.845875e-01	ci right 6.864759e-01	k: 637545	n:930000
KS ci ratio: 2.724284e-01	ci left: 1.922909e-04	ci right 2.539033e-04	k: 206	n:930000
C10orf71   930000 perm   558 sec   (1667 perm/sec)   p_kst 2.215054e-04   p_cons 6.855323e-01   p_joint 8.311828e-04

Joint ci ratio: 1.423233e-01	ci left: 7.489862e-04	ci right 8.647638e-04	k: 757	n:940000
Cons ci ratio: 2.738633e-03	ci left: 6.845549e-01	ci right 6.864333e-01	k: 644365	n:940000
KS ci ratio: 2.724287e-01	ci left: 1.902452e-04	ci right 2.512022e-04	k: 206	n:940000
C10orf71   940000 perm   567 sec   (1657 perm/sec)   p_kst 2.191489e-04   p_cons 6.854947e-01   p_joint 8.053191e-04

Joint ci ratio: 1.420429e-01	ci left: 7.441476e-04	ci right 8.589314e-04	k: 760	n:950000
Cons ci ratio: 2.724486e-03	ci left: 6.845115e-01	ci right 6.863800e-01	k: 651174	n:950000
KS ci ratio: 2.711221e-01	ci left: 1.902045e-04	ci right 2.508063e-04	k: 208	n:950000
C10orf71   950000 perm   577 sec   (1646 perm/sec)   p_kst 2.189474e-04   p_cons 6.854463e-01   p_joint 8.000000e-04

Joint ci ratio: 1.390580e-01	ci left: 7.695631e-04	ci right 8.855662e-04	k: 793	n:960000
Cons ci ratio: 2.710243e-03	ci left: 6.845190e-01	ci right 6.863778e-01	k: 658031	n:960000
KS ci ratio: 2.737553e-01	ci left: 1.843410e-04	ci right 2.437433e-04	k: 204	n:960000
C10orf71   960000 perm   587 sec   (1636 perm/sec)   p_kst 2.125000e-04   p_cons 6.854490e-01   p_joint 8.260417e-04

Joint ci ratio: 1.412108e-01	ci left: 7.377537e-04	ci right 8.508286e-04	k: 769	n:970000
Cons ci ratio: 2.696465e-03	ci left: 6.844872e-01	ci right 6.863364e-01	k: 664850	n:970000
KS ci ratio: 2.717738e-01	ci left: 1.853219e-04	ci right 2.445343e-04	k: 207	n:970000
C10orf71   970000 perm   596 sec   (1626 perm/sec)   p_kst 2.134021e-04   p_cons 6.854124e-01   p_joint 7.927835e-04

Joint ci ratio: 1.404829e-01	ci left: 7.381013e-04	ci right 8.505974e-04	k: 777	n:980000
Cons ci ratio: 2.683282e-03	ci left: 6.843938e-01	ci right 6.862337e-01	k: 671608	n:980000
KS ci ratio: 2.711230e-01	ci left: 1.843818e-04	ci right 2.431287e-04	k: 208	n:980000
C10orf71   980000 perm   606 sec   (1617 perm/sec)   p_kst 2.122449e-04   p_cons 6.853143e-01   p_joint 7.928571e-04

Joint ci ratio: 1.396773e-01	ci left: 7.394180e-04	ci right 8.514147e-04	k: 786	n:990000
Cons ci ratio: 2.669134e-03	ci left: 6.844893e-01	ci right 6.863197e-01	k: 678551	n:990000
KS ci ratio: 2.691977e-01	ci left: 1.853444e-04	ci right 2.439079e-04	k: 211	n:990000
C10orf71   990000 perm   616 sec   (1607 perm/sec)   p_kst 2.131313e-04   p_cons 6.854051e-01   p_joint 7.939394e-04

Joint ci ratio: 1.397667e-01	ci left: 7.310586e-04	ci right 8.418659e-04	k: 785	n:1000000
Cons ci ratio: 2.655447e-03	ci left: 6.845439e-01	ci right 6.863650e-01	k: 685455	n:1000000
KS ci ratio: 2.685652e-01	ci left: 1.844236e-04	ci right 2.425361e-04	k: 212	n:1000000
C10orf71   1000000 perm   626 sec   (1598 perm/sec)   p_kst 2.120000e-04   p_cons 6.854550e-01   p_joint 7.850000e-04

Joint ci ratio: 1.402143e-01	ci left: 7.190430e-04	ci right 8.284072e-04	k: 780	n:1010000
Cons ci ratio: 2.642606e-03	ci left: 6.844934e-01	ci right 6.863056e-01	k: 692254	n:1010000
KS ci ratio: 2.673132e-01	ci left: 1.844448e-04	ci right 2.422476e-04	k: 214	n:1010000
C10orf71   1010000 perm   636 sec   (1588 perm/sec)   p_kst 2.118812e-04   p_cons 6.854000e-01   p_joint 7.722772e-04

Joint ci ratio: 1.395902e-01	ci left: 7.186160e-04	ci right 8.273884e-04	k: 787	n:1020000
Cons ci ratio: 2.630242e-03	ci left: 6.843958e-01	ci right 6.861992e-01	k: 699004	n:1020000
KS ci ratio: 2.636590e-01	ci left: 1.881275e-04	ci right 2.461455e-04	k: 220	n:1020000
C10orf71   1020000 perm   646 sec   (1578 perm/sec)   p_kst 2.156863e-04   p_cons 6.852980e-01   p_joint 7.715686e-04

Joint ci ratio: 1.392375e-01	ci left: 7.153871e-04	ci right 8.233745e-04	k: 791	n:1030000
Cons ci ratio: 2.617107e-03	ci left: 6.844556e-01	ci right 6.862502e-01	k: 705914	n:1030000
KS ci ratio: 2.630647e-01	ci left: 1.872078e-04	ci right 2.447906e-04	k: 221	n:1030000
C10orf71   1030000 perm   657 sec   (1569 perm/sec)   p_kst 2.145631e-04   p_cons 6.853534e-01   p_joint 7.679612e-04

Joint ci ratio: 1.392380e-01	ci left: 7.085082e-04	ci right 8.154576e-04	k: 791	n:1040000
Cons ci ratio: 2.604503e-03	ci left: 6.844584e-01	ci right 6.862444e-01	k: 712766	n:1040000
KS ci ratio: 2.624743e-01	ci left: 1.863059e-04	ci right 2.434616e-04	k: 222	n:1040000
C10orf71   1040000 perm   667 sec   (1559 perm/sec)   p_kst 2.134615e-04   p_cons 6.853519e-01   p_joint 7.605769e-04

Joint ci ratio: 1.420483e-01	ci left: 6.732746e-04	ci right 7.771306e-04	k: 760	n:1050000
Cons ci ratio: 2.592097e-03	ci left: 6.844584e-01	ci right 6.862358e-01	k: 719615	n:1050000
KS ci ratio: 2.607263e-01	ci left: 1.872013e-04	ci right 2.441870e-04	k: 225	n:1050000
C10orf71   1050000 perm   677 sec   (1550 perm/sec)   p_kst 2.142857e-04   p_cons 6.853476e-01   p_joint 7.238095e-04

Joint ci ratio: 1.416767e-01	ci left: 6.705626e-04	ci right 7.737066e-04	k: 764	n:1060000
Cons ci ratio: 2.580013e-03	ci left: 6.844338e-01	ci right 6.862029e-01	k: 726438	n:1060000
KS ci ratio: 2.607266e-01	ci left: 1.854353e-04	ci right 2.418833e-04	k: 225	n:1060000
C10orf71   1060000 perm   688 sec   (1541 perm/sec)   p_kst 2.122642e-04   p_cons 6.853189e-01   p_joint 7.207547e-04

Joint ci ratio: 1.432792e-01	ci left: 6.489736e-04	ci right 7.500226e-04	k: 747	n:1070000
Cons ci ratio: 2.568386e-03	ci left: 6.843611e-01	ci right 6.861220e-01	k: 733209	n:1070000
KS ci ratio: 2.607269e-01	ci left: 1.837022e-04	ci right 2.396228e-04	k: 225	n:1070000
C10orf71   1070000 perm   699 sec   (1531 perm/sec)   p_kst 2.102804e-04   p_cons 6.852421e-01   p_joint 6.981308e-04

Joint ci ratio: 1.475875e-01	ci left: 6.045972e-04	ci right 7.018169e-04	k: 704	n:1080000
Cons ci ratio: 2.556497e-03	ci left: 6.843602e-01	ci right 6.861129e-01	k: 740056	n:1080000
KS ci ratio: 2.601521e-01	ci left: 1.828667e-04	ci right 2.383903e-04	k: 226	n:1080000
C10orf71   1080000 perm   709 sec   (1522 perm/sec)   p_kst 2.092593e-04   p_cons 6.852370e-01   p_joint 6.518519e-04

Joint ci ratio: 1.469635e-01	ci left: 6.043522e-04	ci right 7.010855e-04	k: 710	n:1090000
Cons ci ratio: 2.544399e-03	ci left: 6.844226e-01	ci right 6.861672e-01	k: 746972	n:1090000
KS ci ratio: 2.601523e-01	ci left: 1.811890e-04	ci right 2.362033e-04	k: 226	n:1090000
C10orf71   1090000 perm   720 sec   (1514 perm/sec)   p_kst 2.073394e-04   p_cons 6.852954e-01   p_joint 6.513761e-04

Joint ci ratio: 1.459405e-01	ci left: 6.076159e-04	ci right 7.041357e-04	k: 720	n:1100000
Cons ci ratio: 2.533175e-03	ci left: 6.843639e-01	ci right 6.861006e-01	k: 753756	n:1100000
KS ci ratio: 2.584500e-01	ci left: 1.820919e-04	ci right 2.369601e-04	k: 229	n:1100000
C10orf71   1100000 perm   731 sec   (1505 perm/sec)   p_kst 2.081818e-04   p_cons 6.852327e-01   p_joint 6.545455e-04

Joint ci ratio: 1.449386e-01	ci left: 6.108231e-04	ci right 7.071287e-04	k: 730	n:1110000
Cons ci ratio: 2.522077e-03	ci left: 6.843098e-01	ci right 6.860388e-01	k: 760544	n:1110000
KS ci ratio: 2.567807e-01	ci left: 1.829796e-04	ci right 2.377021e-04	k: 232	n:1110000
C10orf71   1110000 perm   742 sec   (1496 perm/sec)   p_kst 2.090090e-04   p_cons 6.851748e-01   p_joint 6.576577e-04

Joint ci ratio: 1.440544e-01	ci left: 6.131146e-04	ci right 7.091410e-04	k: 739	n:1120000
Cons ci ratio: 2.510786e-03	ci left: 6.843148e-01	ci right 6.860360e-01	k: 767397	n:1120000
KS ci ratio: 2.540687e-01	ci left: 1.855244e-04	ci right 2.403292e-04	k: 237	n:1120000
C10orf71   1120000 perm   753 sec   (1488 perm/sec)   p_kst 2.116071e-04   p_cons 6.851759e-01   p_joint 6.598214e-04

Joint ci ratio: 1.454380e-01	ci left: 5.957477e-04	ci right 6.900282e-04	k: 725	n:1130000
Cons ci ratio: 2.499610e-03	ci left: 6.843259e-01	ci right 6.860395e-01	k: 774257	n:1130000
KS ci ratio: 2.530079e-01	ci left: 1.855401e-04	ci right 2.400845e-04	k: 239	n:1130000
C10orf71   1130000 perm   764 sec   (1480 perm/sec)   p_kst 2.115044e-04   p_cons 6.851832e-01   p_joint 6.415929e-04

Joint ci ratio: 1.448408e-01	ci left: 5.955939e-04	ci right 6.894294e-04	k: 731	n:1140000
Cons ci ratio: 2.488460e-03	ci left: 6.843579e-01	ci right 6.860639e-01	k: 781141	n:1140000
KS ci ratio: 2.524826e-01	ci left: 1.847342e-04	ci right 2.389112e-04	k: 240	n:1140000
C10orf71   1140000 perm   775 sec   (1472 perm/sec)   p_kst 2.105263e-04   p_cons 6.852114e-01   p_joint 6.412281e-04

Joint ci ratio: 1.440556e-01	ci left: 5.971200e-04	ci right 6.906421e-04	k: 739	n:1150000
Cons ci ratio: 2.477827e-03	ci left: 6.843250e-01	ci right 6.860236e-01	k: 787951	n:1150000
KS ci ratio: 2.514414e-01	ci left: 1.847571e-04	ci right 2.386824e-04	k: 242	n:1150000
C10orf71   1150000 perm   786 sec   (1464 perm/sec)   p_kst 2.104348e-04   p_cons 6.851748e-01   p_joint 6.426087e-04

Joint ci ratio: 1.448416e-01	ci left: 5.853248e-04	ci right 6.775430e-04	k: 731	n:1160000
Cons ci ratio: 2.467216e-03	ci left: 6.843125e-01	ci right 6.860038e-01	k: 794784	n:1160000
KS ci ratio: 2.504131e-01	ci left: 1.847801e-04	ci right 2.384572e-04	k: 244	n:1160000
C10orf71   1160000 perm   797 sec   (1456 perm/sec)   p_kst 2.103448e-04   p_cons 6.851586e-01   p_joint 6.301724e-04

Joint ci ratio: 1.446444e-01	ci left: 5.819695e-04	ci right 6.735234e-04	k: 733	n:1170000
Cons ci ratio: 2.456161e-03	ci left: 6.844020e-01	ci right 6.860859e-01	k: 801736	n:1170000
KS ci ratio: 2.493972e-01	ci left: 1.848031e-04	ci right 2.382353e-04	k: 246	n:1170000
C10orf71   1170000 perm   808 sec   (1448 perm/sec)   p_kst 2.102564e-04   p_cons 6.852444e-01   p_joint 6.264957e-04

Joint ci ratio: 1.439595e-01	ci left: 5.827556e-04	ci right 6.739618e-04	k: 740	n:1180000
Cons ci ratio: 2.445839e-03	ci left: 6.843866e-01	ci right 6.860634e-01	k: 808566	n:1180000
KS ci ratio: 2.488940e-01	ci left: 1.840315e-04	ci right 2.371166e-04	k: 247	n:1180000
C10orf71   1180000 perm   820 sec   (1440 perm/sec)   p_kst 2.093220e-04   p_cons 6.852254e-01   p_joint 6.271186e-04

Joint ci ratio: 1.433802e-01	ci left: 5.827192e-04	ci right 6.735214e-04	k: 746	n:1190000
Cons ci ratio: 2.435547e-03	ci left: 6.843891e-01	ci right 6.860588e-01	k: 815417	n:1190000
KS ci ratio: 2.478964e-01	ci left: 1.840611e-04	ci right 2.369091e-04	k: 249	n:1190000
C10orf71   1190000 perm   831 sec   (1432 perm/sec)   p_kst 2.092437e-04   p_cons 6.852244e-01   p_joint 6.268908e-04

Joint ci ratio: 1.435730e-01	ci left: 5.762563e-04	ci right 6.661824e-04	k: 744	n:1200000
Cons ci ratio: 2.425707e-03	ci left: 6.843340e-01	ci right 6.859968e-01	k: 822199	n:1200000
KS ci ratio: 2.449738e-01	ci left: 1.872186e-04	ci right 2.402430e-04	k: 255	n:1200000
C10orf71   1200000 perm   843 sec   (1424 perm/sec)   p_kst 2.125000e-04   p_cons 6.851658e-01   p_joint 6.200000e-04

Joint ci ratio: 1.431893e-01	ci left: 5.746810e-04	ci right 6.641011e-04	k: 748	n:1210000
Cons ci ratio: 2.415809e-03	ci left: 6.843112e-01	ci right 6.859672e-01	k: 829019	n:1210000
KS ci ratio: 2.444968e-01	ci left: 1.864471e-04	ci right 2.391345e-04	k: 256	n:1210000
C10orf71   1210000 perm   854 sec   (1416 perm/sec)   p_kst 2.115702e-04   p_cons 6.851397e-01   p_joint 6.181818e-04

Joint ci ratio: 1.429036e-01	ci left: 5.723414e-04	ci right 6.612047e-04	k: 751	n:1220000
Cons ci ratio: 2.405857e-03	ci left: 6.843201e-01	ci right 6.859692e-01	k: 835877	n:1220000
KS ci ratio: 2.440226e-01	ci left: 1.856883e-04	ci right 2.380442e-04	k: 257	n:1220000
C10orf71   1220000 perm   866 sec   (1409 perm/sec)   p_kst 2.106557e-04   p_cons 6.851451e-01   p_joint 6.155738e-04

Joint ci ratio: 1.034205e-01	ci left: 1.106318e-03	ci right 1.227758e-03	k: 1434	n:1230000
Cons ci ratio: 2.251718e-03	ci left: 7.105137e-01	ci right 7.121162e-01	k: 874918	n:1230000
KS ci ratio: 2.426161e-01	ci left: 1.864690e-04	ci right 2.386963e-04	k: 260	n:1230000
C10orf71   1230000 perm   878 sec   (1401 perm/sec)   p_kst 2.113821e-04   p_cons 7.113154e-01   p_joint 1.165854e-03

Joint ci ratio: 1.034932e-01	ci left: 1.095825e-03	ci right 1.216202e-03	k: 1432	n:1240000
Cons ci ratio: 2.242643e-03	ci left: 7.105128e-01	ci right 7.121088e-01	k: 882026	n:1240000
KS ci ratio: 2.421527e-01	ci left: 1.857227e-04	ci right 2.376267e-04	k: 261	n:1240000
C10orf71   1240000 perm   890 sec   (1394 perm/sec)   p_kst 2.104839e-04   p_cons 7.113113e-01   p_joint 1.154839e-03

Joint ci ratio: 1.027427e-01	ci left: 1.103425e-03	ci right 1.223705e-03	k: 1453	n:1250000
Cons ci ratio: 2.233685e-03	ci left: 7.105103e-01	ci right 7.120999e-01	k: 889132	n:1250000
KS ci ratio: 2.403250e-01	ci left: 1.872435e-04	ci right 2.391187e-04	k: 265	n:1250000
C10orf71   1250000 perm   901 sec   (1387 perm/sec)   p_kst 2.120000e-04   p_cons 7.113056e-01   p_joint 1.162400e-03

Joint ci ratio: 1.044099e-01	ci left: 1.059104e-03	ci right 1.176542e-03	k: 1407	n:1260000
Cons ci ratio: 2.225075e-03	ci left: 7.104634e-01	ci right 7.120468e-01	k: 896182	n:1260000
KS ci ratio: 2.398746e-01	ci left: 1.865033e-04	ci right 2.380622e-04	k: 266	n:1260000
C10orf71   1260000 perm   913 sec   (1379 perm/sec)   p_kst 2.111111e-04   p_cons 7.112556e-01   p_joint 1.116667e-03

Joint ci ratio: 1.041515e-01	ci left: 1.056133e-03	ci right 1.172933e-03	k: 1414	n:1270000
Cons ci ratio: 2.216126e-03	ci left: 7.104984e-01	ci right 7.120754e-01	k: 903335	n:1270000
KS ci ratio: 2.389812e-01	ci left: 1.865151e-04	ci right 2.378568e-04	k: 268	n:1270000
C10orf71   1270000 perm   925 sec   (1372 perm/sec)   p_kst 2.110236e-04   p_cons 7.112874e-01   p_joint 1.113386e-03

Joint ci ratio: 1.047091e-01	ci left: 1.036469e-03	ci right 1.151746e-03	k: 1399	n:1280000
Cons ci ratio: 2.207661e-03	ci left: 7.104625e-01	ci right 7.120334e-01	k: 910398	n:1280000
KS ci ratio: 2.389814e-01	ci left: 1.850580e-04	ci right 2.359986e-04	k: 268	n:1280000
C10orf71   1280000 perm   937 sec   (1366 perm/sec)   p_kst 2.093750e-04   p_cons 7.112484e-01   p_joint 1.092969e-03

Joint ci ratio: 1.044484e-01	ci left: 1.033718e-03	ci right 1.148386e-03	k: 1406	n:1290000
Cons ci ratio: 2.198986e-03	ci left: 7.104846e-01	ci right 7.120494e-01	k: 917535	n:1290000
KS ci ratio: 2.385385e-01	ci left: 1.843522e-04	ci right 2.349906e-04	k: 269	n:1290000
C10orf71   1290000 perm   950 sec   (1358 perm/sec)   p_kst 2.085271e-04   p_cons 7.112674e-01   p_joint 1.089922e-03

Joint ci ratio: 1.060842e-01	ci left: 9.935594e-04	ci right 1.105606e-03	k: 1363	n:1300000
Cons ci ratio: 2.190412e-03	ci left: 7.105063e-01	ci right 7.120651e-01	k: 924672	n:1300000
KS ci ratio: 2.380981e-01	ci left: 1.836574e-04	ci right 2.339981e-04	k: 270	n:1300000
C10orf71   1300000 perm   962 sec   (1351 perm/sec)   p_kst 2.076923e-04   p_cons 7.112862e-01   p_joint 1.048462e-03

Joint ci ratio: 1.055055e-01	ci left: 9.971224e-04	ci right 1.108919e-03	k: 1378	n:1310000
Cons ci ratio: 2.182283e-03	ci left: 7.104628e-01	ci right 7.120157e-01	k: 931724	n:1310000
KS ci ratio: 2.372244e-01	ci left: 1.836913e-04	ci right 2.338293e-04	k: 272	n:1310000
C10orf71   1310000 perm   974 sec   (1345 perm/sec)   p_kst 2.076336e-04   p_cons 7.112397e-01   p_joint 1.051908e-03

Joint ci ratio: 1.058910e-01	ci left: 9.821926e-04	ci right 1.092743e-03	k: 1368	n:1320000
Cons ci ratio: 2.174107e-03	ci left: 7.104457e-01	ci right 7.119927e-01	k: 938810	n:1320000
KS ci ratio: 2.367912e-01	ci left: 1.830122e-04	ci right 2.328604e-04	k: 273	n:1320000
C10orf71   1320000 perm   987 sec   (1338 perm/sec)   p_kst 2.068182e-04   p_cons 7.112197e-01   p_joint 1.036364e-03

Joint ci ratio: 1.083349e-01	ci left: 9.301702e-04	ci right 1.037435e-03	k: 1307	n:1330000
Cons ci ratio: 2.165812e-03	ci left: 7.104688e-01	ci right 7.120100e-01	k: 945949	n:1330000
KS ci ratio: 2.350813e-01	ci left: 1.844660e-04	ci right 2.342945e-04	k: 277	n:1330000
C10orf71   1330000 perm   999 sec   (1331 perm/sec)   p_kst 2.082707e-04   p_cons 7.112398e-01   p_joint 9.827068e-04

Joint ci ratio: 1.077596e-01	ci left: 9.333942e-04	ci right 1.040423e-03	k: 1321	n:1340000
Cons ci ratio: 2.157819e-03	ci left: 7.104520e-01	ci right 7.119874e-01	k: 953035	n:1340000
KS ci ratio: 2.334080e-01	ci left: 1.858993e-04	ci right 2.357059e-04	k: 281	n:1340000
C10orf71   1340000 perm   1012 sec   (1324 perm/sec)   p_kst 2.097015e-04   p_cons 7.112201e-01   p_joint 9.858209e-04

Joint ci ratio: 1.077192e-01	ci left: 9.272008e-04	ci right 1.033477e-03	k: 1322	n:1350000
Cons ci ratio: 2.149832e-03	ci left: 7.104510e-01	ci right 7.119807e-01	k: 960142	n:1350000
KS ci ratio: 2.334081e-01	ci left: 1.845222e-04	ci right 2.339600e-04	k: 281	n:1350000
C10orf71   1350000 perm   1024 sec   (1318 perm/sec)   p_kst 2.081481e-04   p_cons 7.112163e-01   p_joint 9.792593e-04

Joint ci ratio: 1.078829e-01	ci left: 9.175210e-04	ci right 1.022858e-03	k: 1318	n:1360000
Cons ci ratio: 2.141723e-03	ci left: 7.104905e-01	ci right 7.120145e-01	k: 967304	n:1360000
KS ci ratio: 2.325848e-01	ci left: 1.845502e-04	ci right 2.337960e-04	k: 283	n:1360000
C10orf71   1360000 perm   1037 sec   (1311 perm/sec)   p_kst 2.080882e-04   p_cons 7.112529e-01   p_joint 9.691176e-04

Joint ci ratio: 1.074358e-01	ci left: 9.186368e-04	ci right 1.023637e-03	k: 1329	n:1370000
Cons ci ratio: 2.134008e-03	ci left: 7.104710e-01	ci right 7.119894e-01	k: 974386	n:1370000
KS ci ratio: 2.325850e-01	ci left: 1.832031e-04	ci right 2.320895e-04	k: 283	n:1370000
C10orf71   1370000 perm   1050 sec   (1304 perm/sec)   p_kst 2.065693e-04   p_cons 7.112307e-01   p_joint 9.700730e-04

Joint ci ratio: 1.093456e-01	ci left: 8.795493e-04	ci right 9.819842e-04	k: 1283	n:1380000
Cons ci ratio: 2.126146e-03	ci left: 7.104960e-01	ci right 7.120089e-01	k: 981529	n:1380000
KS ci ratio: 2.317704e-01	ci left: 1.832405e-04	ci right 2.319411e-04	k: 285	n:1380000
C10orf71   1380000 perm   1063 sec   (1298 perm/sec)   p_kst 2.065217e-04   p_cons 7.112529e-01   p_joint 9.297101e-04

Joint ci ratio: 1.119964e-01	ci left: 8.312496e-04	ci right 9.305612e-04	k: 1223	n:1390000
Cons ci ratio: 2.118401e-03	ci left: 7.105149e-01	ci right 7.120223e-01	k: 988664	n:1390000
KS ci ratio: 2.309642e-01	ci left: 1.832777e-04	ci right 2.317945e-04	k: 287	n:1390000
C10orf71   1390000 perm   1076 sec   (1291 perm/sec)   p_kst 2.064748e-04   p_cons 7.112691e-01   p_joint 8.798561e-04

Joint ci ratio: 1.116775e-01	ci left: 8.301722e-04	ci right 9.290542e-04	k: 1230	n:1400000
Cons ci ratio: 2.111225e-03	ci left: 7.104392e-01	ci right 7.119414e-01	k: 995667	n:1400000
KS ci ratio: 2.301664e-01	ci left: 1.833147e-04	ci right 2.316498e-04	k: 289	n:1400000
C10orf71   1400000 perm   1089 sec   (1285 perm/sec)   p_kst 2.064286e-04   p_cons 7.111907e-01   p_joint 8.785714e-04

Joint ci ratio: 1.114065e-01	ci left: 8.284211e-04	ci right 9.268392e-04	k: 1236	n:1410000
Cons ci ratio: 2.103815e-03	ci left: 7.104242e-01	ci right 7.119210e-01	k: 1002754	n:1410000
KS ci ratio: 2.297707e-01	ci left: 1.826829e-04	ci right 2.307569e-04	k: 290	n:1410000
C10orf71   1410000 perm   1103 sec   (1279 perm/sec)   p_kst 2.056738e-04   p_cons 7.111730e-01   p_joint 8.765957e-04

Joint ci ratio: 1.110480e-01	ci left: 8.280642e-04	ci right 9.261026e-04	k: 1244	n:1420000
Cons ci ratio: 2.096393e-03	ci left: 7.104270e-01	ci right 7.119186e-01	k: 1009866	n:1420000
KS ci ratio: 2.289851e-01	ci left: 1.827239e-04	ci right 2.306211e-04	k: 292	n:1420000
C10orf71   1420000 perm   1116 sec   (1273 perm/sec)   p_kst 2.056338e-04   p_cons 7.111732e-01   p_joint 8.760563e-04

Joint ci ratio: 1.105606e-01	ci left: 8.297527e-04	ci right 9.275318e-04	k: 1255	n:1430000
Cons ci ratio: 2.089298e-03	ci left: 7.103808e-01	ci right 7.118673e-01	k: 1016908	n:1430000
KS ci ratio: 2.282076e-01	ci left: 1.827647e-04	ci right 2.304869e-04	k: 294	n:1430000
C10orf71   1430000 perm   1129 sec   (1267 perm/sec)   p_kst 2.055944e-04   p_cons 7.111245e-01   p_joint 8.776224e-04

Joint ci ratio: 1.102538e-01	ci left: 8.287173e-04	ci right 9.260859e-04	k: 1262	n:1440000
Cons ci ratio: 2.081870e-03	ci left: 7.104152e-01	ci right 7.118964e-01	k: 1024065	n:1440000
KS ci ratio: 2.282078e-01	ci left: 1.814954e-04	ci right 2.288863e-04	k: 294	n:1440000
C10orf71   1440000 perm   1142 sec   (1261 perm/sec)   p_kst 2.041667e-04   p_cons 7.111563e-01   p_joint 8.763889e-04

Joint ci ratio: 1.099063e-01	ci left: 8.283674e-04	ci right 9.253682e-04	k: 1270	n:1450000
Cons ci ratio: 2.074566e-03	ci left: 7.104402e-01	ci right 7.119162e-01	k: 1031209	n:1450000
KS ci ratio: 2.270561e-01	ci left: 1.821947e-04	ci right 2.294945e-04	k: 297	n:1450000
C10orf71   1450000 perm   1155 sec   (1255 perm/sec)   p_kst 2.048276e-04   p_cons 7.111786e-01   p_joint 8.758621e-04

Joint ci ratio: 1.096909e-01	ci left: 8.260242e-04	ci right 9.225488e-04	k: 1275	n:1460000
Cons ci ratio: 2.067448e-03	ci left: 7.104429e-01	ci right 7.119138e-01	k: 1038321	n:1460000
KS ci ratio: 2.266762e-01	ci left: 1.815928e-04	ci right 2.286465e-04	k: 298	n:1460000
C10orf71   1460000 perm   1169 sec   (1249 perm/sec)   p_kst 2.041096e-04   p_cons 7.111788e-01   p_joint 8.732877e-04

Joint ci ratio: 1.098637e-01	ci left: 8.177584e-04	ci right 9.134774e-04	k: 1271	n:1470000
Cons ci ratio: 2.060492e-03	ci left: 7.104278e-01	ci right 7.118938e-01	k: 1045407	n:1470000
KS ci ratio: 2.259218e-01	ci left: 1.816409e-04	ci right 2.285286e-04	k: 300	n:1470000
C10orf71   1470000 perm   1183 sec   (1243 perm/sec)   p_kst 2.040816e-04   p_cons 7.111612e-01   p_joint 8.646259e-04

Joint ci ratio: 1.097346e-01	ci left: 8.142043e-04	ci right 9.093880e-04	k: 1274	n:1480000
Cons ci ratio: 2.053427e-03	ci left: 7.104488e-01	ci right 7.119098e-01	k: 1052546	n:1480000
KS ci ratio: 2.255476e-01	ci left: 1.810511e-04	ci right 2.276983e-04	k: 301	n:1480000
C10orf71   1480000 perm   1196 sec   (1237 perm/sec)   p_kst 2.033784e-04   p_cons 7.111797e-01   p_joint 8.608108e-04

Joint ci ratio: 1.096919e-01	ci left: 8.093924e-04	ci right 9.039744e-04	k: 1275	n:1490000
Cons ci ratio: 2.046634e-03	ci left: 7.104292e-01	ci right 7.118854e-01	k: 1059625	n:1490000
KS ci ratio: 2.248044e-01	ci left: 1.811026e-04	ci right 2.275880e-04	k: 303	n:1490000
C10orf71   1490000 perm   1210 sec   (1231 perm/sec)   p_kst 2.033557e-04   p_cons 7.111577e-01   p_joint 8.557047e-04

Joint ci ratio: 1.093497e-01	ci left: 8.091837e-04	ci right 9.034273e-04	k: 1283	n:1500000
Cons ci ratio: 2.039611e-03	ci left: 7.104700e-01	ci right 7.119212e-01	k: 1066794	n:1500000
KS ci ratio: 2.240686e-01	ci left: 1.811536e-04	ci right 2.274789e-04	k: 305	n:1500000
C10orf71   1500000 perm   1224 sec   (1226 perm/sec)   p_kst 2.033333e-04   p_cons 7.111960e-01   p_joint 8.553333e-04

Joint ci ratio: 1.098650e-01	ci left: 7.960954e-04	ci right 8.892799e-04	k: 1271	n:1510000
Cons ci ratio: 2.033042e-03	ci left: 7.104327e-01	ci right 7.118791e-01	k: 1073846	n:1510000
KS ci ratio: 2.233399e-01	ci left: 1.812042e-04	ci right 2.273710e-04	k: 307	n:1510000
C10orf71   1510000 perm   1238 sec   (1220 perm/sec)   p_kst 2.033113e-04   p_cons 7.111563e-01   p_joint 8.417219e-04

Joint ci ratio: 1.103001e-01	ci left: 7.844599e-04	ci right 8.766697e-04	k: 1261	n:1520000
Cons ci ratio: 2.026196e-03	ci left: 7.104650e-01	ci right 7.119066e-01	k: 1081003	n:1520000
KS ci ratio: 2.229783e-01	ci left: 1.806332e-04	ci right 2.265698e-04	k: 308	n:1520000
C10orf71   1520000 perm   1252 sec   (1214 perm/sec)   p_kst 2.026316e-04   p_cons 7.111862e-01   p_joint 8.296053e-04

Joint ci ratio: 1.107404e-01	ci left: 7.729772e-04	ci right 8.642236e-04	k: 1251	n:1530000
Cons ci ratio: 2.019557e-03	ci left: 7.104687e-01	ci right 7.119056e-01	k: 1088117	n:1530000
KS ci ratio: 2.226184e-01	ci left: 1.800697e-04	ci right 2.257789e-04	k: 309	n:1530000
C10orf71   1530000 perm   1266 sec   (1208 perm/sec)   p_kst 2.019608e-04   p_cons 7.111876e-01   p_joint 8.176471e-04

Joint ci ratio: 1.110072e-01	ci left: 7.641696e-04	ci right 8.546078e-04	k: 1245	n:1540000
Cons ci ratio: 2.013005e-03	ci left: 7.104679e-01	ci right 7.119001e-01	k: 1095224	n:1540000
KS ci ratio: 2.222603e-01	ci left: 1.795136e-04	ci right 2.249983e-04	k: 310	n:1540000
C10orf71   1540000 perm   1280 sec   (1203 perm/sec)   p_kst 2.012987e-04   p_cons 7.111844e-01   p_joint 8.084416e-04

Joint ci ratio: 1.106967e-01	ci left: 7.636304e-04	ci right 8.537355e-04	k: 1252	n:1550000
Cons ci ratio: 2.006424e-03	ci left: 7.104858e-01	ci right 7.119134e-01	k: 1102360	n:1550000
KS ci ratio: 2.215491e-01	ci left: 1.795740e-04	ci right 2.249086e-04	k: 312	n:1550000
C10orf71   1550000 perm   1295 sec   (1197 perm/sec)   p_kst 2.012903e-04   p_cons 7.112000e-01   p_joint 8.077419e-04

Joint ci ratio: 1.107855e-01	ci left: 7.574886e-04	ci right 8.469455e-04	k: 1250	n:1560000
Cons ci ratio: 1.999921e-03	ci left: 7.105009e-01	ci right 7.119239e-01	k: 1109492	n:1560000
KS ci ratio: 2.204948e-01	ci left: 1.802395e-04	ci right 2.254963e-04	k: 315	n:1560000
C10orf71   1560000 perm   1309 sec   (1192 perm/sec)   p_kst 2.019231e-04   p_cons 7.112128e-01   p_joint 8.012821e-04

Joint ci ratio: 1.106973e-01	ci left: 7.539024e-04	ci right 8.428602e-04	k: 1252	n:1570000
Cons ci ratio: 1.993817e-03	ci left: 7.104464e-01	ci right 7.118649e-01	k: 1116515	n:1570000
KS ci ratio: 2.204950e-01	ci left: 1.790915e-04	ci right 2.240600e-04	k: 315	n:1570000
C10orf71   1570000 perm   1323 sec   (1187 perm/sec)   p_kst 2.006369e-04   p_cons 7.111561e-01   p_joint 7.974522e-04

Joint ci ratio: 1.103894e-01	ci left: 7.534387e-04	ci right 8.420785e-04	k: 1259	n:1580000
Cons ci ratio: 1.987637e-03	ci left: 7.104198e-01	ci right 7.118339e-01	k: 1123581	n:1580000
KS ci ratio: 2.201470e-01	ci left: 1.785560e-04	ci right 2.233097e-04	k: 316	n:1580000
C10orf71   1580000 perm   1337 sec   (1182 perm/sec)   p_kst 2.000000e-04   p_cons 7.111272e-01   p_joint 7.968354e-04

Joint ci ratio: 1.107864e-01	ci left: 7.431961e-04	ci right 8.309657e-04	k: 1250	n:1590000
Cons ci ratio: 1.981271e-03	ci left: 7.104439e-01	ci right 7.118535e-01	k: 1130727	n:1590000
KS ci ratio: 2.191125e-01	ci left: 1.792160e-04	ci right 2.238957e-04	k: 319	n:1590000
C10orf71   1590000 perm   1352 sec   (1176 perm/sec)   p_kst 2.006289e-04   p_cons 7.111491e-01   p_joint 7.861635e-04

Joint ci ratio: 1.111876e-01	ci left: 7.330821e-04	ci right 8.199914e-04	k: 1241	n:1600000
Cons ci ratio: 1.974990e-03	ci left: 7.104627e-01	ci right 7.118678e-01	k: 1137865	n:1600000
KS ci ratio: 2.184310e-01	ci left: 1.792774e-04	ci right 2.238147e-04	k: 321	n:1600000
C10orf71   1600000 perm   1366 sec   (1171 perm/sec)   p_kst 2.006250e-04   p_cons 7.111656e-01   p_joint 7.756250e-04

Joint ci ratio: 1.109201e-01	ci left: 7.321519e-04	ci right 8.187285e-04	k: 1247	n:1610000
Cons ci ratio: 1.968942e-03	ci left: 7.104452e-01	ci right 7.118460e-01	k: 1144945	n:1610000
KS ci ratio: 2.174205e-01	ci left: 1.799256e-04	ci right 2.243894e-04	k: 324	n:1610000
C10orf71   1610000 perm   1381 sec   (1166 perm/sec)   p_kst 2.012422e-04   p_cons 7.111460e-01   p_joint 7.745342e-04

Joint ci ratio: 1.110094e-01	ci left: 7.264321e-04	ci right 8.124059e-04	k: 1245	n:1620000
Cons ci ratio: 1.962759e-03	ci left: 7.104675e-01	ci right 7.118639e-01	k: 1152089	n:1620000
KS ci ratio: 2.170868e-01	ci left: 1.793986e-04	ci right 2.236551e-04	k: 325	n:1620000
C10orf71   1620000 perm   1396 sec   (1161 perm/sec)   p_kst 2.006173e-04   p_cons 7.111660e-01   p_joint 7.685185e-04

Joint ci ratio: 1.105665e-01	ci left: 7.279404e-04	ci right 8.137267e-04	k: 1255	n:1630000
Cons ci ratio: 1.956664e-03	ci left: 7.104833e-01	ci right 7.118754e-01	k: 1159223	n:1630000
KS ci ratio: 2.160947e-01	ci left: 1.800386e-04	ci right 2.242232e-04	k: 328	n:1630000
C10orf71   1630000 perm   1410 sec   (1156 perm/sec)   p_kst 2.012270e-04   p_cons 7.111798e-01   p_joint 7.699387e-04

Joint ci ratio: 1.100854e-01	ci left: 7.300240e-04	ci right 8.156572e-04	k: 1266	n:1640000
Cons ci ratio: 1.950724e-03	ci left: 7.104782e-01	ci right 7.118661e-01	k: 1166323	n:1640000
KS ci ratio: 2.154409e-01	ci left: 1.800945e-04	ci right 2.241413e-04	k: 330	n:1640000
C10orf71   1640000 perm   1425 sec   (1151 perm/sec)   p_kst 2.012195e-04   p_cons 7.111726e-01   p_joint 7.719512e-04

Joint ci ratio: 1.093539e-01	ci left: 7.356200e-04	ci right 8.212994e-04	k: 1283	n:1650000
Cons ci ratio: 1.944659e-03	ci left: 7.105108e-01	ci right 7.118945e-01	k: 1173485	n:1650000
KS ci ratio: 2.135141e-01	ci left: 1.824441e-04	ci right 2.266142e-04	k: 336	n:1650000
C10orf71   1650000 perm   1440 sec   (1146 perm/sec)   p_kst 2.036364e-04   p_cons 7.112030e-01   p_joint 7.775758e-04

Joint ci ratio: 1.112789e-01	ci left: 7.054133e-04	ci right 7.891155e-04	k: 1239	n:1660000
Cons ci ratio: 1.938620e-03	ci left: 7.105497e-01	ci right 7.119291e-01	k: 1180658	n:1660000
KS ci ratio: 2.131981e-01	ci left: 1.819152e-04	ci right 2.258836e-04	k: 337	n:1660000
C10orf71   1660000 perm   1455 sec   (1141 perm/sec)   p_kst 2.030120e-04   p_cons 7.112398e-01   p_joint 7.463855e-04

Joint ci ratio: 1.127445e-01	ci left: 6.825639e-04	ci right 7.646925e-04	k: 1207	n:1670000
Cons ci ratio: 1.932858e-03	ci left: 7.105407e-01	ci right 7.119160e-01	k: 1187752	n:1670000
KS ci ratio: 2.131982e-01	ci left: 1.808259e-04	ci right 2.245310e-04	k: 337	n:1670000
C10orf71   1670000 perm   1470 sec   (1136 perm/sec)   p_kst 2.017964e-04   p_cons 7.112287e-01   p_joint 7.227545e-04

Joint ci ratio: 1.122806e-01	ci left: 6.842859e-04	ci right 7.662605e-04	k: 1217	n:1680000
Cons ci ratio: 1.926922e-03	ci left: 7.105801e-01	ci right 7.119513e-01	k: 1194927	n:1680000
KS ci ratio: 2.122583e-01	ci left: 1.814401e-04	ci right 2.250752e-04	k: 340	n:1680000
C10orf71   1680000 perm   1486 sec   (1131 perm/sec)   p_kst 2.023810e-04   p_cons 7.112661e-01   p_joint 7.244048e-04

Joint ci ratio: 1.119594e-01	ci left: 6.842628e-04	ci right 7.659846e-04	k: 1224	n:1690000
Cons ci ratio: 1.921444e-03	ci left: 7.105326e-01	ci right 7.118998e-01	k: 1201956	n:1690000
KS ci ratio: 2.116386e-01	ci left: 1.814871e-04	ci right 2.249896e-04	k: 342	n:1690000
C10orf71   1690000 perm   1501 sec   (1126 perm/sec)   p_kst 2.023669e-04   p_cons 7.112166e-01   p_joint 7.242604e-04

Joint ci ratio: 1.127452e-01	ci left: 6.705184e-04	ci right 7.511982e-04	k: 1207	n:1700000
Cons ci ratio: 1.915519e-03	ci left: 7.105917e-01	ci right 7.119547e-01	k: 1209165	n:1700000
KS ci ratio: 2.098112e-01	ci left: 1.837628e-04	ci right 2.273815e-04	k: 348	n:1700000
C10orf71   1700000 perm   1516 sec   (1121 perm/sec)   p_kst 2.047059e-04   p_cons 7.112735e-01   p_joint 7.100000e-04

Joint ci ratio: 1.123275e-01	ci left: 6.717123e-04	ci right 7.522164e-04	k: 1216	n:1710000
Cons ci ratio: 1.909825e-03	ci left: 7.106120e-01	ci right 7.119710e-01	k: 1216309	n:1710000
KS ci ratio: 2.089151e-01	ci left: 1.843505e-04	ci right 2.278980e-04	k: 351	n:1710000
C10orf71   1710000 perm   1531 sec   (1117 perm/sec)   p_kst 2.052632e-04   p_cons 7.112918e-01   p_joint 7.111111e-04

Joint ci ratio: 1.120516e-01	ci left: 6.711975e-04	ci right 7.514293e-04	k: 1222	n:1720000
Cons ci ratio: 1.904240e-03	ci left: 7.106192e-01	ci right 7.119743e-01	k: 1223431	n:1720000
KS ci ratio: 2.080305e-01	ci left: 1.849319e-04	ci right 2.284081e-04	k: 354	n:1720000
C10orf71   1720000 perm   1547 sec   (1112 perm/sec)   p_kst 2.058140e-04   p_cons 7.112971e-01   p_joint 7.104651e-04

Joint ci ratio: 1.122357e-01	ci left: 6.650703e-04	ci right 7.447090e-04	k: 1218	n:1730000
Cons ci ratio: 1.898606e-03	ci left: 7.106478e-01	ci right 7.119989e-01	k: 1230590	n:1730000
KS ci ratio: 2.077381e-01	ci left: 1.844108e-04	ci right 2.276959e-04	k: 355	n:1730000
C10orf71   1730000 perm   1562 sec   (1107 perm/sec)   p_kst 2.052023e-04   p_cons 7.113237e-01   p_joint 7.040462e-04

Joint ci ratio: 1.124670e-01	ci left: 6.584551e-04	ci right 7.374749e-04	k: 1213	n:1740000
Cons ci ratio: 1.893074e-03	ci left: 7.106646e-01	ci right 7.120117e-01	k: 1237729	n:1740000
KS ci ratio: 2.071571e-01	ci left: 1.844407e-04	ci right 2.275964e-04	k: 357	n:1740000
C10orf71   1740000 perm   1578 sec   (1103 perm/sec)   p_kst 2.051724e-04   p_cons 7.113385e-01   p_joint 6.971264e-04

Joint ci ratio: 1.122823e-01	ci left: 6.569140e-04	ci right 7.356107e-04	k: 1217	n:1750000
Cons ci ratio: 1.887932e-03	ci left: 7.106068e-01	ci right 7.119502e-01	k: 1244738	n:1750000
KS ci ratio: 2.071572e-01	ci left: 1.833868e-04	ci right 2.262958e-04	k: 357	n:1750000
C10orf71   1750000 perm   1594 sec   (1098 perm/sec)   p_kst 2.040000e-04   p_cons 7.112789e-01   p_joint 6.954286e-04

Joint ci ratio: 1.010697e-01	ci left: 8.108079e-04	ci right 8.976663e-04	k: 1502	n:1760000
Cons ci ratio: 1.882701e-03	ci left: 7.105781e-01	ci right 7.119178e-01	k: 1251797	n:1760000
KS ci ratio: 2.057254e-01	ci left: 1.850389e-04	ci right 2.279976e-04	k: 362	n:1760000
C10orf71   1760000 perm   1609 sec   (1094 perm/sec)   p_kst 2.056818e-04   p_cons 7.112483e-01   p_joint 8.534091e-04

Joint ci ratio: 1.007684e-01	ci left: 8.111835e-04	ci right 8.978077e-04	k: 1511	n:1770000
Cons ci ratio: 1.877389e-03	ci left: 7.105769e-01	ci right 7.119128e-01	k: 1258904	n:1770000
KS ci ratio: 2.051610e-01	ci left: 1.850653e-04	ci right 2.278975e-04	k: 364	n:1770000
C10orf71   1770000 perm   1625 sec   (1089 perm/sec)   p_kst 2.056497e-04   p_cons 7.112452e-01   p_joint 8.536723e-04

Joint ci ratio: 1.004038e-01	ci left: 8.126506e-04	ci right 8.990990e-04	k: 1522	n:1780000
Cons ci ratio: 1.872142e-03	ci left: 7.105713e-01	ci right 7.119033e-01	k: 1266003	n:1780000
KS ci ratio: 2.043229e-01	ci left: 1.856246e-04	ci right 2.283888e-04	k: 367	n:1780000
C10orf71   1780000 perm   1641 sec   (1085 perm/sec)   p_kst 2.061798e-04   p_cons 7.112376e-01   p_joint 8.550562e-04

Joint ci ratio: 1.002395e-01	ci left: 8.108338e-04	ci right 8.969395e-04	k: 1527	n:1790000
Cons ci ratio: 1.866950e-03	ci left: 7.105634e-01	ci right 7.118918e-01	k: 1273098	n:1790000
KS ci ratio: 2.040460e-01	ci left: 1.851177e-04	ci right 2.277001e-04	k: 368	n:1790000
C10orf71   1790000 perm   1658 sec   (1079 perm/sec)   p_kst 2.055866e-04   p_cons 7.112279e-01   p_joint 8.530726e-04

Joint ci ratio: 1.016819e-01	ci left: 7.830429e-04	ci right 8.674653e-04	k: 1484	n:1800000
Cons ci ratio: 1.861923e-03	ci left: 7.105284e-01	ci right 7.118531e-01	k: 1280144	n:1800000
KS ci ratio: 2.034952e-01	ci left: 1.851436e-04	ci right 2.276028e-04	k: 370	n:1800000
C10orf71   1800000 perm   1676 sec   (1074 perm/sec)   p_kst 2.055556e-04   p_cons 7.111911e-01   p_joint 8.244444e-04

Joint ci ratio: 1.013751e-01	ci left: 7.835628e-04	ci right 8.677713e-04	k: 1493	n:1810000
Cons ci ratio: 1.856695e-03	ci left: 7.105474e-01	ci right 7.118685e-01	k: 1287287	n:1810000
KS ci ratio: 2.026774e-01	ci left: 1.856939e-04	ci right 2.280870e-04	k: 373	n:1810000
C10orf71   1810000 perm   1692 sec   (1070 perm/sec)   p_kst 2.060773e-04   p_cons 7.112083e-01   p_joint 8.248619e-04

Joint ci ratio: 1.011048e-01	ci left: 7.835418e-04	ci right 8.675102e-04	k: 1501	n:1820000
Cons ci ratio: 1.851615e-03	ci left: 7.105432e-01	ci right 7.118606e-01	k: 1294388	n:1820000
KS ci ratio: 2.018693e-01	ci left: 1.862385e-04	ci right 2.285655e-04	k: 376	n:1820000
C10orf71   1820000 perm   1708 sec   (1066 perm/sec)   p_kst 2.065934e-04   p_cons 7.112022e-01   p_joint 8.247253e-04

Joint ci ratio: 1.008032e-01	ci left: 7.840541e-04	ci right 8.678118e-04	k: 1510	n:1830000
Cons ci ratio: 1.846684e-03	ci left: 7.105149e-01	ci right 7.118287e-01	k: 1301445	n:1830000
KS ci ratio: 2.008067e-01	ci left: 1.872964e-04	ci right 2.296123e-04	k: 380	n:1830000
C10orf71   1830000 perm   1724 sec   (1061 perm/sec)   p_kst 2.076503e-04   p_cons 7.111721e-01   p_joint 8.251366e-04

Joint ci ratio: 1.006702e-01	ci left: 7.819120e-04	ci right 8.653242e-04	k: 1514	n:1840000
Cons ci ratio: 1.841826e-03	ci left: 7.104793e-01	ci right 7.117896e-01	k: 1308488	n:1840000
KS ci ratio: 1.997607e-01	ci left: 1.883434e-04	ci right 2.306472e-04	k: 384	n:1840000
C10orf71   1840000 perm   1740 sec   (1057 perm/sec)   p_kst 2.086957e-04   p_cons 7.111348e-01   p_joint 8.228261e-04

Joint ci ratio: 1.006704e-01	ci left: 7.776854e-04	ci right 8.606469e-04	k: 1514	n:1850000
Cons ci ratio: 1.836698e-03	ci left: 7.105133e-01	ci right 7.118201e-01	k: 1315659	n:1850000
KS ci ratio: 1.995019e-01	ci left: 1.878389e-04	ci right 2.299680e-04	k: 385	n:1850000
C10orf71   1850000 perm   1756 sec   (1053 perm/sec)   p_kst 2.081081e-04   p_cons 7.111670e-01   p_joint 8.183784e-04

Joint ci ratio: 1.008373e-01	ci left: 7.708837e-04	ci right 8.532640e-04	k: 1509	n:1860000
Cons ci ratio: 1.831623e-03	ci left: 7.105443e-01	ci right 7.118475e-01	k: 1322825	n:1860000
KS ci ratio: 1.992440e-01	ci left: 1.873398e-04	ci right 2.292960e-04	k: 386	n:1860000
C10orf71   1860000 perm   1773 sec   (1049 perm/sec)   p_kst 2.075269e-04   p_cons 7.111962e-01   p_joint 8.112903e-04

Joint ci ratio: 1.005712e-01	ci left: 7.709316e-04	ci right 8.530869e-04	k: 1517	n:1870000
Cons ci ratio: 1.826681e-03	ci left: 7.105547e-01	ci right 7.118543e-01	k: 1329953	n:1870000
KS ci ratio: 1.987312e-01	ci left: 1.873542e-04	ci right 2.291926e-04	k: 388	n:1870000
C10orf71   1870000 perm   1789 sec   (1045 perm/sec)   p_kst 2.074866e-04   p_cons 7.112048e-01   p_joint 8.112299e-04

Joint ci ratio: 1.004061e-01	ci left: 7.694237e-04	ci right 8.512756e-04	k: 1522	n:1880000
Cons ci ratio: 1.821824e-03	ci left: 7.105548e-01	ci right 7.118510e-01	k: 1337062	n:1880000
KS ci ratio: 1.982223e-01	ci left: 1.873686e-04	ci right 2.290901e-04	k: 390	n:1880000
C10orf71   1880000 perm   1806 sec   (1041 perm/sec)   p_kst 2.074468e-04   p_cons 7.112032e-01   p_joint 8.095745e-04

Joint ci ratio: 1.011063e-01	ci left: 7.545212e-04	ci right 8.353808e-04	k: 1501	n:1890000
Cons ci ratio: 1.816874e-03	ci left: 7.105845e-01	ci right 7.118773e-01	k: 1344227	n:1890000
KS ci ratio: 1.979693e-01	ci left: 1.868801e-04	ci right 2.284333e-04	k: 391	n:1890000
C10orf71   1890000 perm   1822 sec   (1037 perm/sec)   p_kst 2.068783e-04   p_cons 7.112312e-01   p_joint 7.941799e-04

Joint ci ratio: 1.007380e-01	ci left: 7.561934e-04	ci right 8.369196e-04	k: 1512	n:1900000
Cons ci ratio: 1.812031e-03	ci left: 7.105987e-01	ci right 7.118880e-01	k: 1351363	n:1900000
KS ci ratio: 1.974662e-01	ci left: 1.868970e-04	ci right 2.283357e-04	k: 393	n:1900000
C10orf71   1900000 perm   1839 sec   (1033 perm/sec)   p_kst 2.068421e-04   p_cons 7.112437e-01   p_joint 7.957895e-04

Joint ci ratio: 1.003408e-01	ci left: 7.583591e-04	ci right 8.389784e-04	k: 1524	n:1910000
Cons ci ratio: 1.807260e-03	ci left: 7.106054e-01	ci right 7.118913e-01	k: 1358485	n:1910000
KS ci ratio: 1.967187e-01	ci left: 1.874117e-04	ci right 2.287883e-04	k: 396	n:1910000
C10orf71   1910000 perm   1856 sec   (1029 perm/sec)   p_kst 2.073298e-04   p_cons 7.112487e-01   p_joint 7.979058e-04

Joint ci ratio: 1.001440e-01	ci left: 7.574559e-04	ci right 8.378121e-04	k: 1530	n:1920000
Cons ci ratio: 1.802639e-03	ci left: 7.105860e-01	ci right 7.118686e-01	k: 1365557	n:1920000
KS ci ratio: 1.959795e-01	ci left: 1.879213e-04	ci right 2.292359e-04	k: 399	n:1920000
C10orf71   1920000 perm   1873 sec   (1025 perm/sec)   p_kst 2.078125e-04   p_cons 7.112276e-01   p_joint 7.968750e-04

Joint ci ratio: 9.972143e-02	ci left: 7.600988e-04	ci right 8.403751e-04	k: 1543	n:1930000
Cons ci ratio: 1.797889e-03	ci left: 7.106046e-01	ci right 7.118839e-01	k: 1372702	n:1930000
KS ci ratio: 1.952487e-01	ci left: 1.884259e-04	ci right 2.296786e-04	k: 402	n:1930000
C10orf71   1930000 perm   1890 sec   (1021 perm/sec)   p_kst 2.082902e-04   p_cons 7.112446e-01   p_joint 7.994819e-04

Joint ci ratio: 9.949617e-02	ci left: 7.596991e-04	ci right 8.397414e-04	k: 1550	n:1940000
Cons ci ratio: 1.793190e-03	ci left: 7.106200e-01	ci right 7.118959e-01	k: 1379841	n:1940000
KS ci ratio: 1.940485e-01	ci left: 1.899063e-04	ci right 2.311974e-04	k: 407	n:1940000
C10orf71   1940000 perm   1907 sec   (1017 perm/sec)   p_kst 2.097938e-04   p_cons 7.112582e-01   p_joint 7.989691e-04

Joint ci ratio: 9.940022e-02	ci left: 7.573033e-04	ci right 8.370118e-04	k: 1553	n:1950000
Cons ci ratio: 1.788632e-03	ci left: 7.106111e-01	ci right 7.118837e-01	k: 1386933	n:1950000
KS ci ratio: 1.940486e-01	ci left: 1.889324e-04	ci right 2.300118e-04	k: 407	n:1950000
C10orf71   1950000 perm   1924 sec   (1013 perm/sec)   p_kst 2.087179e-04   p_cons 7.112477e-01   p_joint 7.964103e-04

Joint ci ratio: 9.898691e-02	ci left: 7.599077e-04	ci right 8.395384e-04	k: 1566	n:1960000
Cons ci ratio: 1.784064e-03	ci left: 7.106124e-01	ci right 7.118818e-01	k: 1394045	n:1960000
KS ci ratio: 1.933390e-01	ci left: 1.894249e-04	ci right 2.304430e-04	k: 410	n:1960000
C10orf71   1960000 perm   1941 sec   (1010 perm/sec)   p_kst 2.091837e-04   p_cons 7.112474e-01   p_joint 7.989796e-04

Joint ci ratio: 9.940062e-02	ci left: 7.496148e-04	ci right 8.285144e-04	k: 1553	n:1970000
Cons ci ratio: 1.779516e-03	ci left: 7.106174e-01	ci right 7.118835e-01	k: 1401164	n:1970000
KS ci ratio: 1.921735e-01	ci left: 1.908790e-04	ci right 2.319336e-04	k: 415	n:1970000
C10orf71   1970000 perm   1958 sec   (1006 perm/sec)   p_kst 2.106599e-04   p_cons 7.112508e-01   p_joint 7.883249e-04

Joint ci ratio: 9.924117e-02	ci left: 7.482914e-04	ci right 8.269179e-04	k: 1558	n:1980000
Cons ci ratio: 1.775035e-03	ci left: 7.106147e-01	ci right 7.118776e-01	k: 1408268	n:1980000
KS ci ratio: 1.919430e-01	ci left: 1.903957e-04	ci right 2.312916e-04	k: 416	n:1980000
C10orf71   1980000 perm   1976 sec   (1002 perm/sec)   p_kst 2.101010e-04   p_cons 7.112465e-01   p_joint 7.868687e-04

Joint ci ratio: 9.892435e-02	ci left: 7.494318e-04	ci right 8.279122e-04	k: 1568	n:1990000
Cons ci ratio: 1.770785e-03	ci left: 7.105662e-01	ci right 7.118261e-01	k: 1415281	n:1990000
KS ci ratio: 1.912562e-01	ci left: 1.908742e-04	ci right 2.317091e-04	k: 419	n:1990000
C10orf71   1990000 perm   1993 sec   (998 perm/sec)   p_kst 2.105528e-04   p_cons 7.111965e-01   p_joint 7.879397e-04

Joint ci ratio: 9.864182e-02	ci left: 7.500734e-04	ci right 8.283837e-04	k: 1577	n:2000000
Cons ci ratio: 1.766380e-03	ci left: 7.105613e-01	ci right 7.118180e-01	k: 1422380	n:2000000
KS ci ratio: 1.912563e-01	ci left: 1.899198e-04	ci right 2.305505e-04	k: 419	n:2000000
C10orf71   2000000 perm   2011 sec   (995 perm/sec)   p_kst 2.095000e-04   p_cons 7.111900e-01   p_joint 7.885000e-04

Joint ci ratio: 9.851713e-02	ci left: 7.482827e-04	ci right 8.263015e-04	k: 1581	n:2010000
Cons ci ratio: 1.762179e-03	ci left: 7.105167e-01	ci right 7.117703e-01	k: 1429399	n:2010000
KS ci ratio: 1.903519e-01	ci left: 1.908699e-04	ci right 2.314885e-04	k: 423	n:2010000
C10orf71   2010000 perm   2028 sec   (991 perm/sec)   p_kst 2.104478e-04   p_cons 7.111438e-01   p_joint 7.865672e-04

Joint ci ratio: 9.811470e-02	ci left: 7.508558e-04	ci right 8.288047e-04	k: 1594	n:2020000
Cons ci ratio: 1.757641e-03	ci left: 7.105581e-01	ci right 7.118086e-01	k: 1436591	n:2020000
KS ci ratio: 1.901279e-01	ci left: 1.903965e-04	ci right 2.308611e-04	k: 424	n:2020000
C10orf71   2020000 perm   2045 sec   (988 perm/sec)   p_kst 2.099010e-04   p_cons 7.111837e-01   p_joint 7.891089e-04

Joint ci ratio: 9.805339e-02	ci left: 7.481180e-04	ci right 8.257314e-04	k: 1596	n:2030000
Cons ci ratio: 1.753336e-03	ci left: 7.105528e-01	ci right 7.118002e-01	k: 1443689	n:2030000
KS ci ratio: 1.899046e-01	ci left: 1.899277e-04	ci right 2.302399e-04	k: 425	n:2030000
C10orf71   2030000 perm   2063 sec   (984 perm/sec)   p_kst 2.093596e-04   p_cons 7.111768e-01   p_joint 7.862069e-04

Joint ci ratio: 9.771736e-02	ci left: 7.497109e-04	ci right 8.272078e-04	k: 1607	n:2040000
Cons ci ratio: 1.749064e-03	ci left: 7.105471e-01	ci right 7.117915e-01	k: 1450786	n:2040000
KS ci ratio: 1.896822e-01	ci left: 1.894636e-04	ci right 2.296247e-04	k: 426	n:2040000
C10orf71   2040000 perm   2080 sec   (981 perm/sec)   p_kst 2.088235e-04   p_cons 7.111696e-01   p_joint 7.877451e-04

Joint ci ratio: 9.738475e-02	ci left: 7.512888e-04	ci right 8.286693e-04	k: 1618	n:2050000
Cons ci ratio: 1.744720e-03	ci left: 7.105659e-01	ci right 7.118072e-01	k: 1457933	n:2050000
KS ci ratio: 1.887999e-01	ci left: 1.903982e-04	ci right 2.305482e-04	k: 430	n:2050000
C10orf71   2050000 perm   2097 sec   (978 perm/sec)   p_kst 2.097561e-04   p_cons 7.111868e-01   p_joint 7.892683e-04

Joint ci ratio: 9.750556e-02	ci left: 7.457472e-04	ci right 8.226577e-04	k: 1614	n:2060000
Cons ci ratio: 1.740512e-03	ci left: 7.105597e-01	ci right 7.117980e-01	k: 1465029	n:2060000
KS ci ratio: 1.885813e-01	ci left: 1.899364e-04	ci right 2.299373e-04	k: 431	n:2060000
C10orf71   2060000 perm   2115 sec   (974 perm/sec)   p_kst 2.092233e-04   p_cons 7.111791e-01   p_joint 7.834951e-04

Joint ci ratio: 9.747555e-02	ci left: 7.426158e-04	ci right 8.191784e-04	k: 1615	n:2070000
Cons ci ratio: 1.736282e-03	ci left: 7.105661e-01	ci right 7.118014e-01	k: 1472151	n:2070000
KS ci ratio: 1.874992e-01	ci left: 1.913206e-04	ci right 2.313555e-04	k: 436	n:2070000
C10orf71   2070000 perm   2132 sec   (971 perm/sec)   p_kst 2.106280e-04   p_cons 7.111841e-01   p_joint 7.801932e-04

Joint ci ratio: 9.726514e-02	ci left: 7.423290e-04	ci right 8.186874e-04	k: 1622	n:2080000
Cons ci ratio: 1.732286e-03	ci left: 7.105244e-01	ci right 7.117567e-01	k: 1479173	n:2080000
KS ci ratio: 1.866468e-01	ci left: 1.922338e-04	ci right 2.322563e-04	k: 440	n:2080000
C10orf71   2080000 perm   2150 sec   (968 perm/sec)   p_kst 2.115385e-04   p_cons 7.111409e-01   p_joint 7.798077e-04

Joint ci ratio: 9.714559e-02	ci left: 7.406445e-04	ci right 8.167306e-04	k: 1626	n:2090000
Cons ci ratio: 1.728194e-03	ci left: 7.105123e-01	ci right 7.117417e-01	k: 1486256	n:2090000
KS ci ratio: 1.864356e-01	ci left: 1.917702e-04	ci right 2.316458e-04	k: 441	n:2090000
C10orf71   2090000 perm   2167 sec   (964 perm/sec)   p_kst 2.110048e-04   p_cons 7.111273e-01   p_joint 7.779904e-04

Joint ci ratio: 9.696700e-02	ci left: 7.399054e-04	ci right 8.157679e-04	k: 1632	n:2100000
Cons ci ratio: 1.724041e-03	ci left: 7.105217e-01	ci right 7.117482e-01	k: 1493384	n:2100000
KS ci ratio: 1.860153e-01	ci left: 1.917650e-04	ci right 2.315394e-04	k: 443	n:2100000
C10orf71   2100000 perm   2185 sec   (961 perm/sec)   p_kst 2.109524e-04   p_cons 7.111352e-01   p_joint 7.771429e-04

Joint ci ratio: 9.723570e-02	ci left: 7.322367e-04	ci right 8.075329e-04	k: 1623	n:2110000
Cons ci ratio: 1.720138e-03	ci left: 7.104784e-01	ci right 7.117020e-01	k: 1500401	n:2110000
KS ci ratio: 1.855977e-01	ci left: 1.917599e-04	ci right 2.314340e-04	k: 445	n:2110000
C10orf71   2110000 perm   2204 sec   (957 perm/sec)   p_kst 2.109005e-04   p_cons 7.110905e-01   p_joint 7.691943e-04

Joint ci ratio: 9.711626e-02	ci left: 7.306237e-04	ci right 8.056565e-04	k: 1627	n:2120000
Cons ci ratio: 1.716111e-03	ci left: 7.104714e-01	ci right 7.116922e-01	k: 1507494	n:2120000
KS ci ratio: 1.851830e-01	ci left: 1.917550e-04	ci right 2.313295e-04	k: 447	n:2120000
C10orf71   2120000 perm   2222 sec   (954 perm/sec)   p_kst 2.108491e-04   p_cons 7.110821e-01   p_joint 7.674528e-04

Joint ci ratio: 9.681931e-02	ci left: 7.317746e-04	ci right 8.066827e-04	k: 1637	n:2130000
Cons ci ratio: 1.712174e-03	ci left: 7.104499e-01	ci right 7.116678e-01	k: 1514556	n:2130000
KS ci ratio: 1.849767e-01	ci left: 1.913025e-04	ci right 2.307346e-04	k: 448	n:2130000
C10orf71   2130000 perm   2241 sec   (951 perm/sec)   p_kst 2.103286e-04   p_cons 7.110592e-01   p_joint 7.685446e-04

Joint ci ratio: 9.676038e-02	ci left: 7.292670e-04	ci right 8.038704e-04	k: 1639	n:2140000
Cons ci ratio: 1.708195e-03	ci left: 7.104450e-01	ci right 7.116600e-01	k: 1521653	n:2140000
KS ci ratio: 1.843618e-01	ci left: 1.917456e-04	ci right 2.311230e-04	k: 451	n:2140000
C10orf71   2140000 perm   2259 sec   (947 perm/sec)   p_kst 2.107477e-04   p_cons 7.110528e-01   p_joint 7.658879e-04

Joint ci ratio: 9.652523e-02	ci left: 7.295060e-04	ci right 8.039423e-04	k: 1647	n:2150000
Cons ci ratio: 1.704197e-03	ci left: 7.104513e-01	ci right 7.116635e-01	k: 1528774	n:2150000
KS ci ratio: 1.839552e-01	ci left: 1.917411e-04	ci right 2.310211e-04	k: 453	n:2150000
C10orf71   2150000 perm   2278 sec   (944 perm/sec)   p_kst 2.106977e-04   p_cons 7.110577e-01   p_joint 7.660465e-04

Joint ci ratio: 9.629179e-02	ci left: 7.297431e-04	ci right 8.040133e-04	k: 1655	n:2160000
Cons ci ratio: 1.700174e-03	ci left: 7.104705e-01	ci right 7.116799e-01	k: 1535923	n:2160000
KS ci ratio: 1.835514e-01	ci left: 1.917368e-04	ci right 2.309200e-04	k: 455	n:2160000
C10orf71   2160000 perm   2296 sec   (941 perm/sec)   p_kst 2.106481e-04   p_cons 7.110755e-01   p_joint 7.662037e-04

Joint ci ratio: 9.603116e-02	ci left: 7.304280e-04	ci right 8.045554e-04	k: 1664	n:2170000
Cons ci ratio: 1.696341e-03	ci left: 7.104503e-01	ci right 7.116569e-01	k: 1542987	n:2170000
KS ci ratio: 1.833505e-01	ci left: 1.912929e-04	ci right 2.303379e-04	k: 456	n:2170000
C10orf71   2170000 perm   2314 sec   (938 perm/sec)   p_kst 2.101382e-04   p_cons 7.110539e-01   p_joint 7.668203e-04

Joint ci ratio: 9.585863e-02	ci left: 7.297636e-04	ci right 8.036831e-04	k: 1670	n:2180000
Cons ci ratio: 1.692455e-03	ci left: 7.104496e-01	ci right 7.116535e-01	k: 1550093	n:2180000
KS ci ratio: 1.827516e-01	ci left: 1.917285e-04	ci right 2.307204e-04	k: 459	n:2180000
C10orf71   2180000 perm   2332 sec   (935 perm/sec)   p_kst 2.105505e-04   p_cons 7.110518e-01   p_joint 7.660550e-04

Joint ci ratio: 9.565850e-02	ci left: 7.295512e-04	ci right 8.032861e-04	k: 1677	n:2190000
Cons ci ratio: 1.688796e-03	ci left: 7.104000e-01	ci right 7.116012e-01	k: 1557092	n:2190000
KS ci ratio: 1.823556e-01	ci left: 1.917245e-04	ci right 2.306218e-04	k: 461	n:2190000
C10orf71   2190000 perm   2351 sec   (932 perm/sec)   p_kst 2.105023e-04   p_cons 7.110009e-01   p_joint 7.657534e-04

Joint ci ratio: 9.563015e-02	ci left: 7.266786e-04	ci right 8.001003e-04	k: 1678	n:2200000
Cons ci ratio: 1.685013e-03	ci left: 7.103869e-01	ci right 7.115853e-01	k: 1564170	n:2200000
KS ci ratio: 1.817664e-01	ci left: 1.921545e-04	ci right 2.309992e-04	k: 464	n:2200000
C10orf71   2200000 perm   2370 sec   (928 perm/sec)   p_kst 2.109091e-04   p_cons 7.109864e-01   p_joint 7.627273e-04

Joint ci ratio: 9.574452e-02	ci left: 7.216238e-04	ci right 7.946268e-04	k: 1674	n:2210000
Cons ci ratio: 1.681109e-03	ci left: 7.104096e-01	ci right 7.116053e-01	k: 1571327	n:2210000
KS ci ratio: 1.813768e-01	ci left: 1.921489e-04	ci right 2.309001e-04	k: 466	n:2210000
C10orf71   2210000 perm   2388 sec   (925 perm/sec)   p_kst 2.108597e-04   p_cons 7.110077e-01   p_joint 7.574661e-04

Joint ci ratio: 9.543160e-02	ci left: 7.232097e-04	ci right 7.961207e-04	k: 1685	n:2220000
Cons ci ratio: 1.677348e-03	ci left: 7.104037e-01	ci right 7.115967e-01	k: 1578421	n:2220000
KS ci ratio: 1.806049e-01	ci left: 1.930035e-04	ci right 2.317433e-04	k: 470	n:2220000
C10orf71   2220000 perm   2407 sec   (922 perm/sec)   p_kst 2.117117e-04   p_cons 7.110005e-01   p_joint 7.590090e-04

Joint ci ratio: 9.526228e-02	ci left: 7.225931e-04	ci right 7.953054e-04	k: 1691	n:2230000
Cons ci ratio: 1.673638e-03	ci left: 7.103915e-01	ci right 7.115819e-01	k: 1585501	n:2230000
KS ci ratio: 1.806049e-01	ci left: 1.921380e-04	ci right 2.307041e-04	k: 470	n:2230000
C10orf71   2230000 perm   2426 sec   (919 perm/sec)   p_kst 2.107623e-04   p_cons 7.109870e-01   p_joint 7.582960e-04

Joint ci ratio: 9.506585e-02	ci left: 7.224178e-04	ci right 7.949543e-04	k: 1698	n:2240000
Cons ci ratio: 1.670001e-03	ci left: 7.103675e-01	ci right 7.115552e-01	k: 1592554	n:2240000
KS ci ratio: 1.804136e-01	ci left: 1.917065e-04	ci right 2.301408e-04	k: 471	n:2240000
C10orf71   2240000 perm   2445 sec   (916 perm/sec)   p_kst 2.102679e-04   p_cons 7.109616e-01   p_joint 7.580357e-04

Joint ci ratio: 9.481502e-02	ci left: 7.231121e-04	ci right 7.955161e-04	k: 1707	n:2250000
Cons ci ratio: 1.666326e-03	ci left: 7.103587e-01	ci right 7.115438e-01	k: 1599641	n:2250000
KS ci ratio: 1.802228e-01	ci left: 1.912789e-04	ci right 2.295824e-04	k: 472	n:2250000
C10orf71   2250000 perm   2465 sec   (913 perm/sec)   p_kst 2.097778e-04   p_cons 7.109516e-01   p_joint 7.586667e-04

Joint ci ratio: 9.503818e-02	ci left: 7.164566e-04	ci right 7.883724e-04	k: 1699	n:2260000
Cons ci ratio: 1.662576e-03	ci left: 7.103749e-01	ci right 7.115573e-01	k: 1606784	n:2260000
KS ci ratio: 1.802229e-01	ci left: 1.904325e-04	ci right 2.285666e-04	k: 472	n:2260000
C10orf71   2260000 perm   2484 sec   (910 perm/sec)   p_kst 2.088496e-04   p_cons 7.109664e-01   p_joint 7.517699e-04

Joint ci ratio: 9.492664e-02	ci left: 7.150206e-04	ci right 7.867034e-04	k: 1703	n:2270000
Cons ci ratio: 1.658914e-03	ci left: 7.103750e-01	ci right 7.115549e-01	k: 1613891	n:2270000
KS ci ratio: 1.800327e-01	ci left: 1.900143e-04	ci right 2.280200e-04	k: 473	n:2270000
C10orf71   2270000 perm   2503 sec   (907 perm/sec)   p_kst 2.083700e-04   p_cons 7.109652e-01   p_joint 7.502203e-04

Joint ci ratio: 9.481549e-02	ci left: 7.135973e-04	ci right 7.850490e-04	k: 1707	n:2280000
Cons ci ratio: 1.655420e-03	ci left: 7.103396e-01	ci right 7.115169e-01	k: 1620917	n:2280000
KS ci ratio: 1.796541e-01	ci left: 1.900186e-04	ci right 2.279366e-04	k: 475	n:2280000
C10orf71   2280000 perm   2523 sec   (904 perm/sec)   p_kst 2.083333e-04   p_cons 7.109285e-01   p_joint 7.486842e-04

Joint ci ratio: 9.476014e-02	ci left: 7.113338e-04	ci right 7.825149e-04	k: 1709	n:2290000
Cons ci ratio: 1.651864e-03	ci left: 7.103255e-01	ci right 7.115002e-01	k: 1627991	n:2290000
KS ci ratio: 1.796542e-01	ci left: 1.891888e-04	ci right 2.269412e-04	k: 475	n:2290000
C10orf71   2290000 perm   2542 sec   (901 perm/sec)   p_kst 2.074236e-04   p_cons 7.109131e-01   p_joint 7.462882e-04

Joint ci ratio: 9.462196e-02	ci left: 7.103635e-04	ci right 7.813381e-04	k: 1714	n:2300000
Cons ci ratio: 1.648208e-03	ci left: 7.103419e-01	ci right 7.115141e-01	k: 1635135	n:2300000
KS ci ratio: 1.792780e-01	ci left: 1.891967e-04	ci right 2.268631e-04	k: 477	n:2300000
C10orf71   2300000 perm   2562 sec   (898 perm/sec)   p_kst 2.073913e-04   p_cons 7.109283e-01   p_joint 7.452174e-04

Joint ci ratio: 9.453940e-02	ci left: 7.085562e-04	ci right 7.792851e-04	k: 1717	n:2310000
Cons ci ratio: 1.644807e-03	ci left: 7.103006e-01	ci right 7.114703e-01	k: 1642146	n:2310000
KS ci ratio: 1.787180e-01	ci left: 1.896182e-04	ci right 2.272379e-04	k: 480	n:2310000
C10orf71   2310000 perm   2582 sec   (895 perm/sec)   p_kst 2.077922e-04   p_cons 7.108857e-01   p_joint 7.432900e-04

Joint ci ratio: 9.434739e-02	ci left: 7.084481e-04	ci right 7.790146e-04	k: 1724	n:2320000
Cons ci ratio: 1.641242e-03	ci left: 7.103058e-01	ci right 7.114730e-01	k: 1649264	n:2320000
KS ci ratio: 1.785325e-01	ci left: 1.892127e-04	ci right 2.267087e-04	k: 481	n:2320000
C10orf71   2320000 perm   2602 sec   (892 perm/sec)   p_kst 2.073276e-04   p_cons 7.108897e-01   p_joint 7.431034e-04

Joint ci ratio: 9.410220e-02	ci left: 7.091792e-04	ci right 7.796249e-04	k: 1733	n:2330000
Cons ci ratio: 1.637668e-03	ci left: 7.103191e-01	ci right 7.114838e-01	k: 1656401	n:2330000
KS ci ratio: 1.777962e-01	ci left: 1.900408e-04	ci right 2.275289e-04	k: 485	n:2330000
C10orf71   2330000 perm   2621 sec   (889 perm/sec)   p_kst 2.081545e-04   p_cons 7.109017e-01   p_joint 7.437768e-04

Joint ci ratio: 9.380506e-02	ci left: 7.107389e-04	ci right 7.811044e-04	k: 1744	n:2340000
Cons ci ratio: 1.634145e-03	ci left: 7.103255e-01	ci right 7.114876e-01	k: 1663522	n:2340000
KS ci ratio: 1.765293e-01	ci left: 1.920875e-04	ci right 2.296805e-04	k: 492	n:2340000
C10orf71   2340000 perm   2641 sec   (886 perm/sec)   p_kst 2.102564e-04   p_cons 7.109068e-01   p_joint 7.452991e-04

Joint ci ratio: 9.369780e-02	ci left: 7.093767e-04	ci right 7.795226e-04	k: 1748	n:2350000
Cons ci ratio: 1.630653e-03	ci left: 7.103297e-01	ci right 7.114894e-01	k: 1670638	n:2350000
KS ci ratio: 1.763506e-01	ci left: 1.916768e-04	ci right 2.291474e-04	k: 493	n:2350000
C10orf71   2350000 perm   2660 sec   (883 perm/sec)   p_kst 2.097872e-04   p_cons 7.109098e-01   p_joint 7.438298e-04

Joint ci ratio: 9.372477e-02	ci left: 7.059570e-04	ci right 7.757859e-04	k: 1747	n:2360000
Cons ci ratio: 1.627283e-03	ci left: 7.103084e-01	ci right 7.114656e-01	k: 1677694	n:2360000
KS ci ratio: 1.758175e-01	ci left: 1.920798e-04	ci right 2.295036e-04	k: 496	n:2360000
C10orf71   2360000 perm   2681 sec   (880 perm/sec)   p_kst 2.101695e-04   p_cons 7.108873e-01   p_joint 7.402542e-04

Joint ci ratio: 9.353767e-02	ci left: 7.058627e-04	ci right 7.755353e-04	k: 1754	n:2370000
Cons ci ratio: 1.623943e-03	ci left: 7.102852e-01	ci right 7.114400e-01	k: 1684745	n:2370000
KS ci ratio: 1.751141e-01	ci left: 1.928830e-04	ci right 2.302970e-04	k: 500	n:2370000
C10orf71   2370000 perm   2701 sec   (877 perm/sec)   p_kst 2.109705e-04   p_cons 7.108629e-01   p_joint 7.400844e-04

Joint ci ratio: 9.324583e-02	ci left: 7.074109e-04	ci right 7.770065e-04	k: 1765	n:2380000
Cons ci ratio: 1.620527e-03	ci left: 7.102866e-01	ci right 7.114390e-01	k: 1691854	n:2380000
KS ci ratio: 1.751142e-01	ci left: 1.920725e-04	ci right 2.293294e-04	k: 500	n:2380000
C10orf71   2380000 perm   2722 sec   (874 perm/sec)   p_kst 2.100840e-04   p_cons 7.108630e-01   p_joint 7.415966e-04

Joint ci ratio: 9.314048e-02	ci left: 7.060856e-04	ci right 7.754681e-04	k: 1769	n:2390000
Cons ci ratio: 1.617113e-03	ci left: 7.102930e-01	ci right 7.114429e-01	k: 1698975	n:2390000
KS ci ratio: 1.749398e-01	ci left: 1.916689e-04	ci right 2.288066e-04	k: 501	n:2390000
C10orf71   2390000 perm   2742 sec   (872 perm/sec)   p_kst 2.096234e-04   p_cons 7.108682e-01   p_joint 7.401674e-04

Joint ci ratio: 9.295686e-02	ci left: 7.059924e-04	ci right 7.752215e-04	k: 1776	n:2400000
Cons ci ratio: 1.613699e-03	ci left: 7.103047e-01	ci right 7.114523e-01	k: 1706109	n:2400000
KS ci ratio: 1.744193e-01	ci left: 1.920657e-04	ci right 2.291578e-04	k: 504	n:2400000
C10orf71   2400000 perm   2763 sec   (869 perm/sec)   p_kst 2.100000e-04   p_cons 7.108788e-01   p_joint 7.400000e-04

Joint ci ratio: 9.256684e-02	ci left: 7.091427e-04	ci right 7.783731e-04	k: 1791	n:2410000
Cons ci ratio: 1.610396e-03	ci left: 7.102936e-01	ci right 7.114387e-01	k: 1713188	n:2410000
KS ci ratio: 1.735621e-01	ci left: 1.932531e-04	ci right 2.303719e-04	k: 509	n:2410000
C10orf71   2410000 perm   2783 sec   (866 perm/sec)   p_kst 2.112033e-04   p_cons 7.108664e-01   p_joint 7.431535e-04

Joint ci ratio: 9.241229e-02	ci left: 7.086343e-04	ci right 7.776934e-04	k: 1797	n:2420000
Cons ci ratio: 1.607086e-03	ci left: 7.102895e-01	ci right 7.114323e-01	k: 1720284	n:2420000
KS ci ratio: 1.735622e-01	ci left: 1.924545e-04	ci right 2.294200e-04	k: 509	n:2420000
C10orf71   2420000 perm   2804 sec   (863 perm/sec)   p_kst 2.103306e-04   p_cons 7.108612e-01   p_joint 7.425620e-04

Joint ci ratio: 9.218184e-02	ci left: 7.093363e-04	ci right 7.782822e-04	k: 1806	n:2430000
Cons ci ratio: 1.603892e-03	ci left: 7.102608e-01	ci right 7.114013e-01	k: 1727320	n:2430000
KS ci ratio: 1.732229e-01	ci left: 1.924498e-04	ci right 2.293346e-04	k: 511	n:2430000
C10orf71   2430000 perm   2825 sec   (860 perm/sec)   p_kst 2.102881e-04   p_cons 7.108313e-01   p_joint 7.432099e-04

Joint ci ratio: 9.187719e-02	ci left: 7.112341e-04	ci right 7.801236e-04	k: 1818	n:2440000
Cons ci ratio: 1.600699e-03	ci left: 7.102372e-01	ci right 7.113754e-01	k: 1734368	n:2440000
KS ci ratio: 1.722166e-01	ci left: 1.940138e-04	ci right 2.309599e-04	k: 517	n:2440000
C10orf71   2440000 perm   2845 sec   (858 perm/sec)   p_kst 2.118852e-04   p_cons 7.108066e-01   p_joint 7.450820e-04

Joint ci ratio: 8.610181e-02	ci left: 8.089033e-04	ci right 8.820807e-04	k: 2070	n:2450000
Cons ci ratio: 1.597426e-03	ci left: 7.102392e-01	ci right 7.113750e-01	k: 1741478	n:2450000
KS ci ratio: 1.718851e-01	ci left: 1.940031e-04	ci right 2.308686e-04	k: 519	n:2450000
C10orf71   2450000 perm   2866 sec   (855 perm/sec)   p_kst 2.118367e-04   p_cons 7.108073e-01   p_joint 8.448980e-04

Joint ci ratio: 8.626889e-02	ci left: 8.024331e-04	ci right 8.751730e-04	k: 2062	n:2460000
Cons ci ratio: 1.594040e-03	ci left: 7.102753e-01	ci right 7.114088e-01	k: 1748672	n:2460000
KS ci ratio: 1.713914e-01	ci left: 1.943816e-04	ci right 2.312020e-04	k: 522	n:2460000
C10orf71   2460000 perm   2887 sec   (852 perm/sec)   p_kst 2.121951e-04   p_cons 7.108423e-01   p_joint 8.382114e-04

Joint ci ratio: 8.612292e-02	ci left: 8.019573e-04	ci right 8.745249e-04	k: 2069	n:2470000
Cons ci ratio: 1.590710e-03	ci left: 7.103022e-01	ci right 7.114334e-01	k: 1755844	n:2470000
KS ci ratio: 1.712278e-01	ci left: 1.939821e-04	ci right 2.306882e-04	k: 523	n:2470000
C10orf71   2470000 perm   2908 sec   (849 perm/sec)   p_kst 2.117409e-04   p_cons 7.108680e-01   p_joint 8.376518e-04

Joint ci ratio: 8.601915e-02	ci left: 8.006963e-04	ci right 8.730581e-04	k: 2074	n:2480000
Cons ci ratio: 1.587501e-03	ci left: 7.103031e-01	ci right 7.114319e-01	k: 1762952	n:2480000
KS ci ratio: 1.709020e-01	ci left: 1.939719e-04	ci right 2.305989e-04	k: 525	n:2480000
C10orf71   2480000 perm   2929 sec   (847 perm/sec)   p_kst 2.116935e-04   p_cons 7.108677e-01   p_joint 8.362903e-04

Joint ci ratio: 8.597784e-02	ci left: 7.982665e-04	ci right 8.703724e-04	k: 2076	n:2490000
Cons ci ratio: 1.584274e-03	ci left: 7.103136e-01	ci right 7.114402e-01	k: 1770084	n:2490000
KS ci ratio: 1.709020e-01	ci left: 1.931929e-04	ci right 2.296728e-04	k: 525	n:2490000
C10orf71   2490000 perm   2950 sec   (844 perm/sec)   p_kst 2.108434e-04   p_cons 7.108771e-01   p_joint 8.337349e-04

Joint ci ratio: 8.599871e-02	ci left: 7.946820e-04	ci right 8.664824e-04	k: 2075	n:2500000
Cons ci ratio: 1.581091e-03	ci left: 7.103176e-01	ci right 7.114419e-01	k: 1777200	n:2500000
KS ci ratio: 1.705781e-01	ci left: 1.931859e-04	ci right 2.295883e-04	k: 527	n:2500000
C10orf71   2500000 perm   2972 sec   (841 perm/sec)   p_kst 2.108000e-04   p_cons 7.108800e-01   p_joint 8.300000e-04

Joint ci ratio: 8.587474e-02	ci left: 7.938550e-04	ci right 8.654721e-04	k: 2081	n:2510000
Cons ci ratio: 1.577828e-03	ci left: 7.103475e-01	ci right 7.114696e-01	k: 1784381	n:2510000
KS ci ratio: 1.700955e-01	ci left: 1.935605e-04	ci right 2.299197e-04	k: 530	n:2510000
C10orf71   2510000 perm   2993 sec   (839 perm/sec)   p_kst 2.111554e-04   p_cons 7.109088e-01   p_joint 8.290837e-04

Joint ci ratio: 8.568972e-02	ci left: 7.941996e-04	ci right 8.656857e-04	k: 2090	n:2520000
Cons ci ratio: 1.574731e-03	ci left: 7.103390e-01	ci right 7.114589e-01	k: 1791466	n:2520000
KS ci ratio: 1.696170e-01	ci left: 1.939323e-04	ci right 2.302484e-04	k: 533	n:2520000
C10orf71   2520000 perm   3014 sec   (836 perm/sec)   p_kst 2.115079e-04   p_cons 7.108992e-01   p_joint 8.293651e-04

Joint ci ratio: 8.550589e-02	ci left: 7.945416e-04	ci right 8.658974e-04	k: 2099	n:2530000
Cons ci ratio: 1.571576e-03	ci left: 7.103504e-01	ci right 7.114681e-01	k: 1798601	n:2530000
KS ci ratio: 1.689852e-01	ci left: 1.946798e-04	ci right 2.309862e-04	k: 537	n:2530000
C10orf71   2530000 perm   3036 sec   (833 perm/sec)   p_kst 2.122530e-04   p_cons 7.109095e-01   p_joint 8.296443e-04

Joint ci ratio: 8.536375e-02	ci left: 7.941105e-04	ci right 8.653032e-04	k: 2106	n:2540000
Cons ci ratio: 1.568409e-03	ci left: 7.103700e-01	ci right 7.114854e-01	k: 1805757	n:2540000
KS ci ratio: 1.683604e-01	ci left: 1.954217e-04	ci right 2.317180e-04	k: 541	n:2540000
C10orf71   2540000 perm   3057 sec   (831 perm/sec)   p_kst 2.129921e-04   p_cons 7.109280e-01   p_joint 8.291339e-04

Joint ci ratio: 8.518201e-02	ci left: 7.944505e-04	ci right 8.655145e-04	k: 2115	n:2550000
Cons ci ratio: 1.565261e-03	ci left: 7.103894e-01	ci right 7.115026e-01	k: 1812913	n:2550000
KS ci ratio: 1.680507e-01	ci left: 1.954066e-04	ci right 2.316267e-04	k: 543	n:2550000
C10orf71   2550000 perm   3079 sec   (828 perm/sec)   p_kst 2.129412e-04   p_cons 7.109463e-01   p_joint 8.294118e-04

Joint ci ratio: 8.502145e-02	ci left: 7.944057e-04	ci right 8.653250e-04	k: 2123	n:2560000
Cons ci ratio: 1.562255e-03	ci left: 7.103763e-01	ci right 7.114873e-01	k: 1819986	n:2560000
KS ci ratio: 1.677426e-01	ci left: 1.953917e-04	ci right 2.315359e-04	k: 545	n:2560000
C10orf71   2560000 perm   3101 sec   (826 perm/sec)   p_kst 2.128906e-04   p_cons 7.109320e-01   p_joint 8.292969e-04

Joint ci ratio: 8.480209e-02	ci left: 7.955039e-04	ci right 8.663290e-04	k: 2134	n:2570000
Cons ci ratio: 1.559064e-03	ci left: 7.104166e-01	ci right 7.115254e-01	k: 1827196	n:2570000
KS ci ratio: 1.672836e-01	ci left: 1.957498e-04	ci right 2.318512e-04	k: 548	n:2570000
C10orf71   2570000 perm   3122 sec   (823 perm/sec)   p_kst 2.132296e-04   p_cons 7.109712e-01   p_joint 8.303502e-04

Joint ci ratio: 8.460416e-02	ci left: 7.962145e-04	ci right 8.669292e-04	k: 2144	n:2580000
Cons ci ratio: 1.556076e-03	ci left: 7.104081e-01	ci right 7.115147e-01	k: 1834281	n:2580000
KS ci ratio: 1.669797e-01	ci left: 1.957339e-04	ci right 2.317601e-04	k: 550	n:2580000
C10orf71   2580000 perm   3144 sec   (821 perm/sec)   p_kst 2.131783e-04   p_cons 7.109616e-01   p_joint 8.310078e-04

Joint ci ratio: 8.460430e-02	ci left: 7.931402e-04	ci right 8.635820e-04	k: 2144	n:2590000
Cons ci ratio: 1.553047e-03	ci left: 7.104151e-01	ci right 7.115196e-01	k: 1841406	n:2590000
KS ci ratio: 1.665270e-01	ci left: 1.960881e-04	ci right 2.320719e-04	k: 553	n:2590000
C10orf71   2590000 perm   3166 sec   (818 perm/sec)   p_kst 2.135135e-04   p_cons 7.109676e-01   p_joint 8.277992e-04

Joint ci ratio: 8.448625e-02	ci left: 7.923486e-04	ci right 8.626170e-04	k: 2150	n:2600000
Cons ci ratio: 1.550144e-03	ci left: 7.103932e-01	ci right 7.114956e-01	k: 1848456	n:2600000
KS ci ratio: 1.662272e-01	ci left: 1.960711e-04	ci right 2.319805e-04	k: 555	n:2600000
C10orf71   2600000 perm   3188 sec   (816 perm/sec)   p_kst 2.134615e-04   p_cons 7.109446e-01   p_joint 8.269231e-04

Joint ci ratio: 8.432959e-02	ci left: 7.923132e-04	ci right 8.624418e-04	k: 2158	n:2610000
Cons ci ratio: 1.547204e-03	ci left: 7.103856e-01	ci right 7.114859e-01	k: 1855543	n:2610000
KS ci ratio: 1.659291e-01	ci left: 1.960543e-04	ci right 2.318898e-04	k: 557	n:2610000
C10orf71   2610000 perm   3210 sec   (813 perm/sec)   p_kst 2.134100e-04   p_cons 7.109360e-01   p_joint 8.268199e-04

Joint ci ratio: 8.419323e-02	ci left: 7.919045e-04	ci right 8.618781e-04	k: 2165	n:2620000
Cons ci ratio: 1.544254e-03	ci left: 7.103850e-01	ci right 7.114832e-01	k: 1862648	n:2620000
KS ci ratio: 1.657806e-01	ci left: 1.956719e-04	ci right 2.314023e-04	k: 558	n:2620000
C10orf71   2620000 perm   3232 sec   (811 perm/sec)   p_kst 2.129771e-04   p_cons 7.109344e-01   p_joint 8.263359e-04

Joint ci ratio: 8.423229e-02	ci left: 7.881490e-04	ci right 8.578246e-04	k: 2163	n:2630000
Cons ci ratio: 1.541271e-03	ci left: 7.103981e-01	ci right 7.114942e-01	k: 1869789	n:2630000
KS ci ratio: 1.657807e-01	ci left: 1.949279e-04	ci right 2.305224e-04	k: 558	n:2630000
C10orf71   2630000 perm   3253 sec   (808 perm/sec)   p_kst 2.121673e-04   p_cons 7.109464e-01   p_joint 8.224335e-04

Joint ci ratio: 8.403831e-02	ci left: 7.888718e-04	ci right 8.584428e-04	k: 2173	n:2640000
Cons ci ratio: 1.538269e-03	ci left: 7.104206e-01	ci right 7.115146e-01	k: 1876955	n:2640000
KS ci ratio: 1.654849e-01	ci left: 1.949157e-04	ci right 2.304382e-04	k: 560	n:2640000
C10orf71   2640000 perm   3275 sec   (806 perm/sec)   p_kst 2.121212e-04   p_cons 7.109678e-01   p_joint 8.231061e-04

Joint ci ratio: 8.382646e-02	ci left: 7.899587e-04	ci right 8.594414e-04	k: 2184	n:2650000
Cons ci ratio: 1.535314e-03	ci left: 7.104349e-01	ci right 7.115269e-01	k: 1884100	n:2650000
KS ci ratio: 1.648980e-01	ci left: 1.956272e-04	ci right 2.311404e-04	k: 564	n:2650000
C10orf71   2650000 perm   3297 sec   (804 perm/sec)   p_kst 2.128302e-04   p_cons 7.109811e-01   p_joint 8.241509e-04

Joint ci ratio: 8.382659e-02	ci left: 7.869889e-04	ci right 8.562105e-04	k: 2184	n:2660000
Cons ci ratio: 1.532461e-03	ci left: 7.104263e-01	ci right 7.115161e-01	k: 1891184	n:2660000
KS ci ratio: 1.648981e-01	ci left: 1.948917e-04	ci right 2.302714e-04	k: 564	n:2660000
C10orf71   2660000 perm   3319 sec   (801 perm/sec)   p_kst 2.120301e-04   p_cons 7.109714e-01   p_joint 8.210526e-04

Joint ci ratio: 8.361634e-02	ci left: 7.880750e-04	ci right 8.572098e-04	k: 2195	n:2670000
Cons ci ratio: 1.529535e-03	ci left: 7.104416e-01	ci right 7.115295e-01	k: 1898332	n:2670000
KS ci ratio: 1.644620e-01	ci left: 1.952391e-04	ci right 2.305789e-04	k: 567	n:2670000
C10orf71   2670000 perm   3341 sec   (799 perm/sec)   p_kst 2.123596e-04   p_cons 7.109858e-01   p_joint 8.220974e-04

Joint ci ratio: 8.348341e-02	ci left: 7.876918e-04	ci right 8.566777e-04	k: 2202	n:2680000
Cons ci ratio: 1.526788e-03	ci left: 7.104132e-01	ci right 7.114990e-01	k: 1905363	n:2680000
KS ci ratio: 1.638859e-01	ci left: 1.959418e-04	ci right 2.312723e-04	k: 571	n:2680000
C10orf71   2680000 perm   3363 sec   (797 perm/sec)   p_kst 2.130597e-04   p_cons 7.109563e-01   p_joint 8.216418e-04

Joint ci ratio: 8.327572e-02	ci left: 7.887675e-04	ci right 8.576675e-04	k: 2213	n:2690000
Cons ci ratio: 1.523944e-03	ci left: 7.104151e-01	ci right 7.114989e-01	k: 1912475	n:2690000
KS ci ratio: 1.637429e-01	ci left: 1.955699e-04	ci right 2.307995e-04	k: 572	n:2690000
C10orf71   2690000 perm   3386 sec   (794 perm/sec)   p_kst 2.126394e-04   p_cons 7.109572e-01   p_joint 8.226766e-04

Joint ci ratio: 8.305089e-02	ci left: 7.901982e-04	ci right 8.590278e-04	k: 2225	n:2700000
Cons ci ratio: 1.521094e-03	ci left: 7.104230e-01	ci right 7.115047e-01	k: 1919603	n:2700000
KS ci ratio: 1.630330e-01	ci left: 1.966217e-04	ci right 2.318722e-04	k: 577	n:2700000
C10orf71   2700000 perm   3409 sec   (792 perm/sec)   p_kst 2.137037e-04   p_cons 7.109641e-01   p_joint 8.240741e-04

Joint ci ratio: 8.290206e-02	ci left: 7.901731e-04	ci right 8.588712e-04	k: 2233	n:2710000
Cons ci ratio: 1.518292e-03	ci left: 7.104222e-01	ci right 7.115020e-01	k: 1926708	n:2710000
KS ci ratio: 1.630331e-01	ci left: 1.958962e-04	ci right 2.310166e-04	k: 577	n:2710000
C10orf71   2710000 perm   3431 sec   (790 perm/sec)   p_kst 2.129151e-04   p_cons 7.109624e-01   p_joint 8.239852e-04

Joint ci ratio: 8.273556e-02	ci left: 7.905084e-04	ci right 8.590909e-04	k: 2242	n:2720000
Cons ci ratio: 1.515503e-03	ci left: 7.104219e-01	ci right 7.114997e-01	k: 1933814	n:2720000
KS ci ratio: 1.630331e-01	ci left: 1.951760e-04	ci right 2.301673e-04	k: 577	n:2720000
C10orf71   2720000 perm   3454 sec   (787 perm/sec)   p_kst 2.121324e-04   p_cons 7.109610e-01   p_joint 8.242647e-04

Joint ci ratio: 8.292089e-02	ci left: 7.840255e-04	ci right 8.522053e-04	k: 2232	n:2730000
Cons ci ratio: 1.512697e-03	ci left: 7.104304e-01	ci right 7.115062e-01	k: 1940944	n:2730000
KS ci ratio: 1.630332e-01	ci left: 1.944610e-04	ci right 2.293242e-04	k: 577	n:2730000
C10orf71   2730000 perm   3477 sec   (785 perm/sec)   p_kst 2.113553e-04   p_cons 7.109685e-01   p_joint 8.175824e-04

Joint ci ratio: 8.293960e-02	ci left: 7.808067e-04	ci right 8.487226e-04	k: 2231	n:2740000
Cons ci ratio: 1.509970e-03	ci left: 7.104216e-01	ci right 7.114955e-01	k: 1948027	n:2740000
KS ci ratio: 1.623325e-01	ci left: 1.955019e-04	ci right 2.303863e-04	k: 582	n:2740000
C10orf71   2740000 perm   3500 sec   (783 perm/sec)   p_kst 2.124088e-04   p_cons 7.109588e-01   p_joint 8.142336e-04

Joint ci ratio: 8.282838e-02	ci left: 7.801040e-04	ci right 8.478634e-04	k: 2237	n:2750000
Cons ci ratio: 1.507254e-03	ci left: 7.104140e-01	ci right 7.114859e-01	k: 1955113	n:2750000
KS ci ratio: 1.621935e-01	ci left: 1.951398e-04	ci right 2.299269e-04	k: 583	n:2750000
C10orf71   2750000 perm   3523 sec   (781 perm/sec)   p_kst 2.120000e-04   p_cons 7.109502e-01   p_joint 8.134545e-04

Joint ci ratio: 8.260715e-02	ci left: 7.815354e-04	ci right 8.492291e-04	k: 2249	n:2760000
Cons ci ratio: 1.504524e-03	ci left: 7.104141e-01	ci right 7.114840e-01	k: 1962220	n:2760000
KS ci ratio: 1.617785e-01	ci left: 1.954757e-04	ci right 2.302248e-04	k: 586	n:2760000
C10orf71   2760000 perm   3545 sec   (779 perm/sec)   p_kst 2.123188e-04   p_cons 7.109493e-01   p_joint 8.148551e-04

Joint ci ratio: 8.675828e-02	ci left: 7.045049e-04	ci right 7.687484e-04	k: 2039	n:2770000
Cons ci ratio: 1.501799e-03	ci left: 7.104170e-01	ci right 7.114851e-01	k: 1969335	n:2770000
KS ci ratio: 1.615036e-01	ci left: 1.954628e-04	ci right 2.301449e-04	k: 588	n:2770000
C10orf71   2770000 perm   3568 sec   (776 perm/sec)   p_kst 2.122744e-04   p_cons 7.109513e-01   p_joint 7.361011e-04

Joint ci ratio: 8.650416e-02	ci left: 7.061938e-04	ci right 7.703931e-04	k: 2051	n:2780000
Cons ci ratio: 1.499110e-03	ci left: 7.104138e-01	ci right 7.114800e-01	k: 1976433	n:2780000
KS ci ratio: 1.610938e-01	ci left: 1.957953e-04	ci right 2.304397e-04	k: 591	n:2780000
C10orf71   2780000 perm   3591 sec   (774 perm/sec)   p_kst 2.125899e-04   p_cons 7.109471e-01   p_joint 7.377698e-04

Joint ci ratio: 8.669474e-02	ci left: 7.005066e-04	ci right 7.643363e-04	k: 2042	n:2790000
Cons ci ratio: 1.496375e-03	ci left: 7.104275e-01	ci right 7.114917e-01	k: 1983578	n:2790000
KS ci ratio: 1.608224e-01	ci left: 1.957815e-04	ci right 2.303594e-04	k: 593	n:2790000
C10orf71   2790000 perm   3613 sec   (772 perm/sec)   p_kst 2.125448e-04   p_cons 7.109599e-01   p_joint 7.318996e-04

Joint ci ratio: 8.813112e-02	ci left: 6.749482e-04	ci right 7.375204e-04	k: 1976	n:2800000
Cons ci ratio: 1.493682e-03	ci left: 7.104336e-01	ci right 7.114959e-01	k: 1990702	n:2800000
KS ci ratio: 1.606872e-01	ci left: 1.954250e-04	ci right 2.299082e-04	k: 594	n:2800000
C10orf71   2800000 perm   3637 sec   (770 perm/sec)   p_kst 2.121429e-04   p_cons 7.109650e-01   p_joint 7.057143e-04

Joint ci ratio: 8.788689e-02	ci left: 6.763747e-04	ci right 7.388965e-04	k: 1987	n:2810000
Cons ci ratio: 1.491033e-03	ci left: 7.104315e-01	ci right 7.114919e-01	k: 1997803	n:2810000
KS ci ratio: 1.602836e-01	ci left: 1.957543e-04	ci right 2.302005e-04	k: 597	n:2810000
C10orf71   2810000 perm   3661 sec   (768 perm/sec)   p_kst 2.124555e-04   p_cons 7.109619e-01   p_joint 7.071174e-04

Joint ci ratio: 8.771058e-02	ci left: 6.767508e-04	ci right 7.391754e-04	k: 1995	n:2820000
Cons ci ratio: 1.488350e-03	ci left: 7.104425e-01	ci right 7.115010e-01	k: 2004941	n:2820000
KS ci ratio: 1.600163e-01	ci left: 1.957409e-04	ci right 2.301218e-04	k: 599	n:2820000
C10orf71   2820000 perm   3684 sec   (765 perm/sec)   p_kst 2.124113e-04   p_cons 7.109720e-01   p_joint 7.074468e-04

Joint ci ratio: 8.784291e-02	ci left: 6.722858e-04	ci right 7.343969e-04	k: 1989	n:2830000
Cons ci ratio: 1.485754e-03	ci left: 7.104337e-01	ci right 7.114903e-01	k: 2012023	n:2830000
KS ci ratio: 1.598831e-01	ci left: 1.953885e-04	ci right 2.296761e-04	k: 600	n:2830000
C10orf71   2830000 perm   3707 sec   (763 perm/sec)   p_kst 2.120141e-04   p_cons 7.109622e-01   p_joint 7.028269e-04

Joint ci ratio: 8.775480e-02	ci left: 6.712961e-04	ci right 7.332504e-04	k: 1993	n:2840000
Cons ci ratio: 1.483073e-03	ci left: 7.104520e-01	ci right 7.115067e-01	k: 2019182	n:2840000
KS ci ratio: 1.596178e-01	ci left: 1.953766e-04	ci right 2.295997e-04	k: 602	n:2840000
C10orf71   2840000 perm   3731 sec   (761 perm/sec)   p_kst 2.119718e-04   p_cons 7.109796e-01   p_joint 7.017606e-04

Joint ci ratio: 8.760118e-02	ci left: 6.713430e-04	ci right 7.331876e-04	k: 2000	n:2850000
Cons ci ratio: 1.480426e-03	ci left: 7.104649e-01	ci right 7.115178e-01	k: 2026326	n:2850000
KS ci ratio: 1.594856e-01	ci left: 1.950279e-04	ci right 2.291590e-04	k: 603	n:2850000
C10orf71   2850000 perm   3755 sec   (759 perm/sec)   p_kst 2.115789e-04   p_cons 7.109916e-01   p_joint 7.017544e-04

Joint ci ratio: 8.833320e-02	ci left: 6.577108e-04	ci right 7.188320e-04	k: 1967	n:2860000
Cons ci ratio: 1.477846e-03	ci left: 7.104627e-01	ci right 7.115138e-01	k: 2033427	n:2860000
KS ci ratio: 1.592222e-01	ci left: 1.950174e-04	ci right 2.290849e-04	k: 605	n:2860000
C10orf71   2860000 perm   3779 sec   (757 perm/sec)   p_kst 2.115385e-04   p_cons 7.109885e-01   p_joint 6.877622e-04

Joint ci ratio: 8.849093e-02	ci left: 6.530339e-04	ci right 7.138345e-04	k: 1960	n:2870000
Cons ci ratio: 1.475266e-03	ci left: 7.104647e-01	ci right 7.115139e-01	k: 2040540	n:2870000
KS ci ratio: 1.590910e-01	ci left: 1.946725e-04	ci right 2.286490e-04	k: 606	n:2870000
C10orf71   2870000 perm   3802 sec   (755 perm/sec)   p_kst 2.111498e-04   p_cons 7.109895e-01   p_joint 6.829268e-04

Joint ci ratio: 8.899197e-02	ci left: 6.432969e-04	ci right 7.035477e-04	k: 1938	n:2880000
Cons ci ratio: 1.472631e-03	ci left: 7.104855e-01	ci right 7.115329e-01	k: 2047707	n:2880000
KS ci ratio: 1.589602e-01	ci left: 1.943299e-04	ci right 2.282161e-04	k: 607	n:2880000
C10orf71   2880000 perm   3826 sec   (753 perm/sec)   p_kst 2.107639e-04   p_cons 7.110094e-01   p_joint 6.729167e-04

Joint ci ratio: 8.885462e-02	ci left: 6.431010e-04	ci right 7.032356e-04	k: 1944	n:2890000
Cons ci ratio: 1.469944e-03	ci left: 7.105248e-01	ci right 7.115703e-01	k: 2054928	n:2890000
KS ci ratio: 1.585694e-01	ci left: 1.946543e-04	ci right 2.285057e-04	k: 610	n:2890000
C10orf71   2890000 perm   3849 sec   (751 perm/sec)   p_kst 2.110727e-04   p_cons 7.110478e-01   p_joint 6.726644e-04

Joint ci ratio: 8.876343e-02	ci left: 6.422320e-04	ci right 7.022206e-04	k: 1948	n:2900000
Cons ci ratio: 1.467331e-03	ci left: 7.105469e-01	ci right 7.115906e-01	k: 2062100	n:2900000
KS ci ratio: 1.580529e-01	ci left: 1.953078e-04	ci right 2.291517e-04	k: 614	n:2900000
C10orf71   2900000 perm   3873 sec   (749 perm/sec)   p_kst 2.117241e-04   p_cons 7.110690e-01   p_joint 6.717241e-04

Joint ci ratio: 8.887769e-02	ci left: 6.383449e-04	ci right 6.980511e-04	k: 1943	n:2910000
Cons ci ratio: 1.464808e-03	ci left: 7.105479e-01	ci right 7.115898e-01	k: 2069211	n:2910000
KS ci ratio: 1.577965e-01	ci left: 1.952967e-04	ci right 2.290786e-04	k: 616	n:2910000
C10orf71   2910000 perm   3898 sec   (747 perm/sec)   p_kst 2.116838e-04   p_cons 7.110691e-01   p_joint 6.676976e-04

Joint ci ratio: 8.869535e-02	ci left: 6.388377e-04	ci right 6.984611e-04	k: 1951	n:2920000
Cons ci ratio: 1.462215e-03	ci left: 7.105719e-01	ci right 7.116120e-01	k: 2076389	n:2920000
KS ci ratio: 1.574142e-01	ci left: 1.956148e-04	ci right 2.293620e-04	k: 619	n:2920000
C10orf71   2920000 perm   3922 sec   (745 perm/sec)   p_kst 2.119863e-04   p_cons 7.110921e-01   p_joint 6.681507e-04

Joint ci ratio: 8.869546e-02	ci left: 6.366574e-04	ci right 6.960773e-04	k: 1951	n:2930000
Cons ci ratio: 1.459732e-03	ci left: 7.105687e-01	ci right 7.116070e-01	k: 2083488	n:2930000
KS ci ratio: 1.572875e-01	ci left: 1.952750e-04	ci right 2.289339e-04	k: 620	n:2930000
C10orf71   2930000 perm   3945 sec   (743 perm/sec)   p_kst 2.116041e-04   p_cons 7.110881e-01   p_joint 6.658703e-04

Joint ci ratio: 8.869556e-02	ci left: 6.344918e-04	ci right 6.937097e-04	k: 1951	n:2940000
Cons ci ratio: 1.457059e-03	ci left: 7.106227e-01	ci right 7.116592e-01	k: 2090755	n:2940000
KS ci ratio: 1.570348e-01	ci left: 1.952643e-04	ci right 2.288622e-04	k: 622	n:2940000
C10orf71   2940000 perm   3969 sec   (741 perm/sec)   p_kst 2.115646e-04   p_cons 7.111412e-01   p_joint 6.636054e-04

Joint ci ratio: 8.860486e-02	ci left: 6.336669e-04	ci right 6.927442e-04	k: 1955	n:2950000
Cons ci ratio: 1.454547e-03	ci left: 7.106350e-01	ci right 7.116697e-01	k: 2097900	n:2950000
KS ci ratio: 1.566581e-01	ci left: 1.955795e-04	ci right 2.291433e-04	k: 625	n:2950000
C10orf71   2950000 perm   3993 sec   (739 perm/sec)   p_kst 2.118644e-04   p_cons 7.111525e-01   p_joint 6.627119e-04

Joint ci ratio: 8.844673e-02	ci left: 6.338386e-04	ci right 6.928210e-04	k: 1962	n:2960000
Cons ci ratio: 1.452044e-03	ci left: 7.106485e-01	ci right 7.116815e-01	k: 2105049	n:2960000
KS ci ratio: 1.565331e-01	ci left: 1.952433e-04	ci right 2.287202e-04	k: 626	n:2960000
C10orf71   2960000 perm   4017 sec   (737 perm/sec)   p_kst 2.114865e-04   p_cons 7.111652e-01   p_joint 6.628378e-04

Joint ci ratio: 8.871860e-02	ci left: 6.277535e-04	ci right 6.863585e-04	k: 1950	n:2970000
Cons ci ratio: 1.449519e-03	ci left: 7.106714e-01	ci right 7.117026e-01	k: 2112226	n:2970000
KS ci ratio: 1.562841e-01	ci left: 1.952330e-04	ci right 2.286498e-04	k: 628	n:2970000
C10orf71   2970000 perm   4041 sec   (735 perm/sec)   p_kst 2.114478e-04   p_cons 7.111872e-01   p_joint 6.565657e-04

Joint ci ratio: 8.858250e-02	ci left: 6.276157e-04	ci right 6.861133e-04	k: 1956	n:2980000
Cons ci ratio: 1.447084e-03	ci left: 7.106726e-01	ci right 7.117021e-01	k: 2119339	n:2980000
KS ci ratio: 1.559127e-01	ci left: 1.955452e-04	ci right 2.289285e-04	k: 631	n:2980000
C10orf71   2980000 perm   4066 sec   (733 perm/sec)   p_kst 2.117450e-04   p_cons 7.111876e-01   p_joint 6.563758e-04

Joint ci ratio: 8.849215e-02	ci left: 6.268248e-04	ci right 6.851860e-04	k: 1960	n:2990000
Cons ci ratio: 1.444657e-03	ci left: 7.106749e-01	ci right 7.117026e-01	k: 2126455	n:2990000
KS ci ratio: 1.556666e-01	ci left: 1.955341e-04	ci right 2.288579e-04	k: 633	n:2990000
C10orf71   2990000 perm   4091 sec   (731 perm/sec)   p_kst 2.117057e-04   p_cons 7.111890e-01   p_joint 6.555184e-04

Joint ci ratio: 8.831217e-02	ci left: 6.273432e-04	ci right 6.856277e-04	k: 1968	n:3000000
Cons ci ratio: 1.442257e-03	ci left: 7.106731e-01	ci right 7.116991e-01	k: 2133559	n:3000000
KS ci ratio: 1.555440e-01	ci left: 1.952026e-04	ci right 2.284413e-04	k: 634	n:3000000
C10orf71   3000000 perm   4116 sec   (729 perm/sec)   p_kst 2.113333e-04   p_cons 7.111863e-01   p_joint 6.560000e-04

Joint ci ratio: 8.813329e-02	ci left: 6.278581e-04	ci right 6.860663e-04	k: 1976	n:3010000
Cons ci ratio: 1.439835e-03	ci left: 7.106807e-01	ci right 7.117050e-01	k: 2140691	n:3010000
KS ci ratio: 1.555440e-01	ci left: 1.945541e-04	ci right 2.276824e-04	k: 634	n:3010000
C10orf71   3010000 perm   4141 sec   (727 perm/sec)   p_kst 2.106312e-04   p_cons 7.111930e-01   p_joint 6.564784e-04

Joint ci ratio: 8.799987e-02	ci left: 6.277221e-04	ci right 6.858250e-04	k: 1982	n:3020000
Cons ci ratio: 1.437468e-03	ci left: 7.106762e-01	ci right 7.116989e-01	k: 2147787	n:3020000
KS ci ratio: 1.552996e-01	ci left: 1.945464e-04	ci right 2.276164e-04	k: 636	n:3020000
C10orf71   3020000 perm   4165 sec   (725 perm/sec)   p_kst 2.105960e-04   p_cons 7.111877e-01   p_joint 6.562914e-04

Joint ci ratio: 8.788915e-02	ci left: 6.272643e-04	ci right 6.852480e-04	k: 1987	n:3030000
Cons ci ratio: 1.435087e-03	ci left: 7.106791e-01	ci right 7.117000e-01	k: 2154905	n:3030000
KS ci ratio: 1.548143e-01	ci left: 1.951732e-04	ci right 2.282365e-04	k: 640	n:3030000
C10orf71   3030000 perm   4190 sec   (723 perm/sec)   p_kst 2.112211e-04   p_cons 7.111898e-01   p_joint 6.557756e-04

Joint ci ratio: 8.784504e-02	ci left: 6.258444e-04	ci right 6.836663e-04	k: 1989	n:3040000
Cons ci ratio: 1.432698e-03	ci left: 7.106875e-01	ci right 7.117068e-01	k: 2162040	n:3040000
KS ci ratio: 1.546937e-01	ci left: 1.948474e-04	ci right 2.278274e-04	k: 641	n:3040000
C10orf71   3040000 perm   4214 sec   (721 perm/sec)   p_kst 2.108553e-04   p_cons 7.111974e-01   p_joint 6.542763e-04

Joint ci ratio: 8.771292e-02	ci left: 6.257164e-04	ci right 6.834352e-04	k: 1995	n:3050000
Cons ci ratio: 1.430330e-03	ci left: 7.106933e-01	ci right 7.117109e-01	k: 2169167	n:3050000
KS ci ratio: 1.545734e-01	ci left: 1.945238e-04	ci right 2.274210e-04	k: 642	n:3050000
C10orf71   3050000 perm   4239 sec   (720 perm/sec)   p_kst 2.104918e-04   p_cons 7.112023e-01   p_joint 6.540984e-04

Joint ci ratio: 8.820075e-02	ci left: 6.166401e-04	ci right 6.738542e-04	k: 1973	n:3060000
Cons ci ratio: 1.427979e-03	ci left: 7.106977e-01	ci right 7.117136e-01	k: 2176290	n:3060000
KS ci ratio: 1.540948e-01	ci left: 1.951448e-04	ci right 2.280354e-04	k: 646	n:3060000
C10orf71   3060000 perm   4264 sec   (718 perm/sec)   p_kst 2.111111e-04   p_cons 7.112059e-01   p_joint 6.447712e-04

Joint ci ratio: 8.811156e-02	ci left: 6.159057e-04	ci right 6.729909e-04	k: 1977	n:3070000
Cons ci ratio: 1.425599e-03	ci left: 7.107135e-01	ci right 7.117278e-01	k: 2183448	n:3070000
KS ci ratio: 1.539759e-01	ci left: 1.948223e-04	ci right 2.276309e-04	k: 647	n:3070000
C10orf71   3070000 perm   4291 sec   (716 perm/sec)   p_kst 2.107492e-04   p_cons 7.112208e-01   p_joint 6.439739e-04

Joint ci ratio: 8.795606e-02	ci left: 6.161287e-04	ci right 6.731286e-04	k: 1984	n:3080000
Cons ci ratio: 1.423291e-03	ci left: 7.107120e-01	ci right 7.117246e-01	k: 2190553	n:3080000
KS ci ratio: 1.538572e-01	ci left: 1.945019e-04	ci right 2.272290e-04	k: 648	n:3080000
C10orf71   3080000 perm   4315 sec   (714 perm/sec)   p_kst 2.103896e-04   p_cons 7.112185e-01   p_joint 6.441558e-04

Joint ci ratio: 8.777933e-02	ci left: 6.166669e-04	ci right 6.735961e-04	k: 1992	n:3090000
Cons ci ratio: 1.421058e-03	ci left: 7.106921e-01	ci right 7.117030e-01	k: 2197601	n:3090000
KS ci ratio: 1.535028e-01	ci left: 1.948060e-04	ci right 2.275018e-04	k: 651	n:3090000
C10orf71   3090000 perm   4340 sec   (712 perm/sec)   p_kst 2.106796e-04   p_cons 7.111977e-01   p_joint 6.446602e-04

Joint ci ratio: 8.777942e-02	ci left: 6.146776e-04	ci right 6.714232e-04	k: 1992	n:3100000
Cons ci ratio: 1.418749e-03	ci left: 7.106974e-01	ci right 7.117067e-01	k: 2204727	n:3100000
KS ci ratio: 1.531509e-01	ci left: 1.951082e-04	ci right 2.277728e-04	k: 654	n:3100000
C10orf71   3100000 perm   4365 sec   (710 perm/sec)   p_kst 2.109677e-04   p_cons 7.112023e-01   p_joint 6.425806e-04

Joint ci ratio: 8.760375e-02	ci left: 6.152171e-04	ci right 6.718930e-04	k: 2000	n:3110000
Cons ci ratio: 1.416479e-03	ci left: 7.106943e-01	ci right 7.117020e-01	k: 2211827	n:3110000
KS ci ratio: 1.525696e-01	ci left: 1.960271e-04	ci right 2.287096e-04	k: 659	n:3110000
C10orf71   3110000 perm   4391 sec   (708 perm/sec)   p_kst 2.118971e-04   p_cons 7.111984e-01   p_joint 6.430868e-04

Joint ci ratio: 8.736388e-02	ci left: 6.166937e-04	ci right 6.733423e-04	k: 2011	n:3120000
Cons ci ratio: 1.414276e-03	ci left: 7.106753e-01	ci right 7.116814e-01	k: 2218877	n:3120000
KS ci ratio: 1.521093e-01	ci left: 1.966320e-04	ci right 2.293074e-04	k: 663	n:3120000
C10orf71   3120000 perm   4417 sec   (706 perm/sec)   p_kst 2.125000e-04   p_cons 7.111785e-01   p_joint 6.445513e-04

Joint ci ratio: 8.723392e-02	ci left: 6.165986e-04	ci right 6.731498e-04	k: 2017	n:3130000
Cons ci ratio: 1.412052e-03	ci left: 7.106653e-01	ci right 7.116698e-01	k: 2225955	n:3130000
KS ci ratio: 1.519949e-01	ci left: 1.963111e-04	ci right 2.289064e-04	k: 664	n:3130000
C10orf71   3130000 perm   4443 sec   (705 perm/sec)   p_kst 2.121406e-04   p_cons 7.111677e-01   p_joint 6.444089e-04

Joint ci ratio: 8.706150e-02	ci left: 6.171271e-04	ci right 6.736093e-04	k: 2025	n:3140000
Cons ci ratio: 1.409785e-03	ci left: 7.106710e-01	ci right 7.116739e-01	k: 2233082	n:3140000
KS ci ratio: 1.515398e-01	ci left: 1.969114e-04	ci right 2.294996e-04	k: 668	n:3140000
C10orf71   3140000 perm   4469 sec   (703 perm/sec)   p_kst 2.127389e-04   p_cons 7.111726e-01   p_joint 6.449045e-04

Joint ci ratio: 7.811909e-02	ci left: 7.675225e-04	ci right 8.302265e-04	k: 2515	n:3150000
Cons ci ratio: 1.407492e-03	ci left: 7.106874e-01	ci right 7.116887e-01	k: 2240243	n:3150000
KS ci ratio: 1.509766e-01	ci left: 1.978135e-04	ci right 2.304184e-04	k: 673	n:3150000
C10orf71   3150000 perm   4494 sec   (701 perm/sec)   p_kst 2.136508e-04   p_cons 7.111883e-01   p_joint 7.984127e-04

Joint ci ratio: 7.794884e-02	ci left: 7.685067e-04	ci right 8.311481e-04	k: 2526	n:3160000
Cons ci ratio: 1.405237e-03	ci left: 7.106958e-01	ci right 7.116955e-01	k: 2247379	n:3160000
KS ci ratio: 1.507531e-01	ci left: 1.977966e-04	ci right 2.303460e-04	k: 675	n:3160000
C10orf71   3160000 perm   4522 sec   (699 perm/sec)   p_kst 2.136076e-04   p_cons 7.111959e-01   p_joint 7.993671e-04

Joint ci ratio: 7.336954e-02	ci left: 8.666697e-04	ci right 9.329856e-04	k: 2851	n:3170000
Cons ci ratio: 1.402986e-03	ci left: 7.107061e-01	ci right 7.117042e-01	k: 2254521	n:3170000
KS ci ratio: 1.505306e-01	ci left: 1.977797e-04	ci right 2.302741e-04	k: 677	n:3170000
C10orf71   3170000 perm   4548 sec   (697 perm/sec)   p_kst 2.135647e-04   p_cons 7.112054e-01   p_joint 8.993691e-04

Joint ci ratio: 7.320285e-02	ci left: 8.679575e-04	ci right 9.342146e-04	k: 2864	n:3180000
Cons ci ratio: 1.400795e-03	ci left: 7.107022e-01	ci right 7.116987e-01	k: 2261618	n:3180000
KS ci ratio: 1.498688e-01	ci left: 1.989737e-04	ci right 2.315076e-04	k: 683	n:3180000
C10orf71   3180000 perm   4575 sec   (695 perm/sec)   p_kst 2.147799e-04   p_cons 7.112006e-01   p_joint 9.006289e-04

Joint ci ratio: 7.316462e-02	ci left: 8.661598e-04	ci right 9.322437e-04	k: 2867	n:3190000
Cons ci ratio: 1.398628e-03	ci left: 7.106939e-01	ci right 7.116888e-01	k: 2268701	n:3190000
KS ci ratio: 1.497594e-01	ci left: 1.986517e-04	ci right 2.311071e-04	k: 684	n:3190000
C10orf71   3190000 perm   4601 sec   (693 perm/sec)   p_kst 2.144201e-04   p_cons 7.111915e-01   p_joint 8.987461e-04

Joint ci ratio: 7.307552e-02	ci left: 8.656006e-04	ci right 9.315579e-04	k: 2874	n:3200000
Cons ci ratio: 1.396540e-03	ci left: 7.106656e-01	ci right 7.116590e-01	k: 2275720	n:3200000
KS ci ratio: 1.494325e-01	ci left: 1.989333e-04	ci right 2.313574e-04	k: 687	n:3200000
C10orf71   3200000 perm   4628 sec   (691 perm/sec)   p_kst 2.146875e-04   p_cons 7.111625e-01   p_joint 8.981250e-04

Joint ci ratio: 7.297407e-02	ci left: 8.653507e-04	ci right 9.311936e-04	k: 2882	n:3210000
Cons ci ratio: 1.394339e-03	ci left: 7.106733e-01	ci right 7.116652e-01	k: 2282854	n:3210000
KS ci ratio: 1.494326e-01	ci left: 1.983136e-04	ci right 2.306367e-04	k: 687	n:3210000
C10orf71   3210000 perm   4656 sec   (689 perm/sec)   p_kst 2.140187e-04   p_cons 7.111695e-01   p_joint 8.978193e-04

Joint ci ratio: 7.306300e-02	ci left: 8.605290e-04	ci right 9.260882e-04	k: 2875	n:3220000
Cons ci ratio: 1.392133e-03	ci left: 7.106857e-01	ci right 7.116760e-01	k: 2290003	n:3220000
KS ci ratio: 1.492158e-01	ci left: 1.982956e-04	ci right 2.305647e-04	k: 689	n:3220000
C10orf71   3220000 perm   4683 sec   (688 perm/sec)   p_kst 2.139752e-04   p_cons 7.111811e-01   p_joint 8.928571e-04

Joint ci ratio: 7.339591e-02	ci left: 8.499625e-04	ci right 9.150243e-04	k: 2849	n:3230000
Cons ci ratio: 1.390010e-03	ci left: 7.106766e-01	ci right 7.116654e-01	k: 2297083	n:3230000
KS ci ratio: 1.490001e-01	ci left: 1.982778e-04	ci right 2.304932e-04	k: 691	n:3230000
C10orf71   3230000 perm   4709 sec   (686 perm/sec)   p_kst 2.139319e-04   p_cons 7.111712e-01   p_joint 8.820433e-04

Joint ci ratio: 7.330597e-02	ci left: 8.494600e-04	ci right 9.144003e-04	k: 2856	n:3240000
Cons ci ratio: 1.387845e-03	ci left: 7.106827e-01	ci right 7.116700e-01	k: 2304212	n:3240000
KS ci ratio: 1.486781e-01	ci left: 1.985572e-04	ci right 2.307422e-04	k: 694	n:3240000
C10orf71   3240000 perm   4736 sec   (684 perm/sec)   p_kst 2.141975e-04   p_cons 7.111765e-01   p_joint 8.814815e-04

Joint ci ratio: 7.338323e-02	ci left: 8.450339e-04	ci right 9.097068e-04	k: 2850	n:3250000
Cons ci ratio: 1.385660e-03	ci left: 7.106977e-01	ci right 7.116835e-01	k: 2311370	n:3250000
KS ci ratio: 1.486782e-01	ci left: 1.979463e-04	ci right 2.300322e-04	k: 694	n:3250000
C10orf71   3250000 perm   4763 sec   (682 perm/sec)   p_kst 2.135385e-04   p_cons 7.111908e-01   p_joint 8.769231e-04

Joint ci ratio: 7.333186e-02	ci left: 8.436463e-04	ci right 9.081658e-04	k: 2854	n:3260000
Cons ci ratio: 1.383618e-03	ci left: 7.106733e-01	ci right 7.116576e-01	k: 2318400	n:3260000
KS ci ratio: 1.485713e-01	ci left: 1.976344e-04	ci right 2.296447e-04	k: 695	n:3260000
C10orf71   3260000 perm   4790 sec   (681 perm/sec)   p_kst 2.131902e-04   p_cons 7.111656e-01   p_joint 8.754601e-04

Joint ci ratio: 6.988838e-02	ci left: 9.275649e-04	ci right 9.950363e-04	k: 3142	n:3270000
Cons ci ratio: 1.381495e-03	ci left: 7.106757e-01	ci right 7.116585e-01	k: 2325517	n:3270000
KS ci ratio: 1.480405e-01	ci left: 1.985024e-04	ci right 2.305282e-04	k: 700	n:3270000
C10orf71   3270000 perm   4817 sec   (679 perm/sec)   p_kst 2.140673e-04   p_cons 7.111673e-01   p_joint 9.608563e-04

Joint ci ratio: 6.979963e-02	ci left: 9.271334e-04	ci right 9.944843e-04	k: 3150	n:3280000
Cons ci ratio: 1.379393e-03	ci left: 7.106750e-01	ci right 7.116563e-01	k: 2332624	n:3280000
KS ci ratio: 1.475152e-01	ci left: 1.993652e-04	ci right 2.314061e-04	k: 705	n:3280000
C10orf71   3280000 perm   4844 sec   (677 perm/sec)   p_kst 2.149390e-04   p_cons 7.111659e-01   p_joint 9.603659e-04

Joint ci ratio: 6.967810e-02	ci left: 9.276005e-04	ci right 9.948633e-04	k: 3161	n:3290000
Cons ci ratio: 1.377268e-03	ci left: 7.106838e-01	ci right 7.116636e-01	k: 2339762	n:3290000
KS ci ratio: 1.474109e-01	ci left: 1.990520e-04	ci right 2.310179e-04	k: 706	n:3290000
C10orf71   3290000 perm   4871 sec   (675 perm/sec)   p_kst 2.145897e-04   p_cons 7.111739e-01   p_joint 9.607903e-04

Joint ci ratio: 6.952431e-02	ci left: 9.289582e-04	ci right 9.961648e-04	k: 3175	n:3300000
Cons ci ratio: 1.375211e-03	ci left: 7.106752e-01	ci right 7.116535e-01	k: 2346843	n:3300000
KS ci ratio: 1.470991e-01	ci left: 1.993244e-04	ci right 2.312604e-04	k: 709	n:3300000
C10orf71   3300000 perm   4898 sec   (674 perm/sec)   p_kst 2.148485e-04   p_cons 7.111645e-01   p_joint 9.621212e-04

Joint ci ratio: 6.945877e-02	ci left: 9.279329e-04	ci right 9.949994e-04	k: 3181	n:3310000
Cons ci ratio: 1.373081e-03	ci left: 7.106912e-01	ci right 7.116680e-01	k: 2354005	n:3310000
KS ci ratio: 1.470992e-01	ci left: 1.987222e-04	ci right 2.305617e-04	k: 709	n:3310000
C10orf71   3310000 perm   4926 sec   (672 perm/sec)   p_kst 2.141994e-04   p_cons 7.111798e-01   p_joint 9.610272e-04

Joint ci ratio: 6.953547e-02	ci left: 9.230661e-04	ci right 9.898575e-04	k: 3174	n:3320000
Cons ci ratio: 1.370997e-03	ci left: 7.106962e-01	ci right 7.116715e-01	k: 2361131	n:3320000
KS ci ratio: 1.470992e-01	ci left: 1.981236e-04	ci right 2.298672e-04	k: 709	n:3320000
C10orf71   3320000 perm   4953 sec   (670 perm/sec)   p_kst 2.135542e-04   p_cons 7.111840e-01   p_joint 9.560241e-04

Joint ci ratio: 6.944804e-02	ci left: 9.226547e-04	ci right 9.893291e-04	k: 3182	n:3330000
Cons ci ratio: 1.369002e-03	ci left: 7.106774e-01	ci right 7.116513e-01	k: 2368178	n:3330000
KS ci ratio: 1.468925e-01	ci left: 1.981072e-04	ci right 2.297996e-04	k: 711	n:3330000
C10orf71   3330000 perm   4980 sec   (669 perm/sec)   p_kst 2.135135e-04   p_cons 7.111646e-01   p_joint 9.555556e-04

Joint ci ratio: 6.935008e-02	ci left: 9.225401e-04	ci right 9.891084e-04	k: 3191	n:3340000
Cons ci ratio: 1.366980e-03	ci left: 7.106696e-01	ci right 7.116420e-01	k: 2375261	n:3340000
KS ci ratio: 1.466866e-01	ci left: 1.980908e-04	ci right 2.297324e-04	k: 713	n:3340000
C10orf71   3340000 perm   5008 sec   (667 perm/sec)   p_kst 2.134731e-04   p_cons 7.111560e-01   p_joint 9.553892e-04

Joint ci ratio: 6.922006e-02	ci left: 9.233063e-04	ci right 9.897999e-04	k: 3203	n:3350000
Cons ci ratio: 1.364914e-03	ci left: 7.106776e-01	ci right 7.116486e-01	k: 2382397	n:3350000
KS ci ratio: 1.466867e-01	ci left: 1.974995e-04	ci right 2.290466e-04	k: 713	n:3350000
C10orf71   3350000 perm   5036 sec   (665 perm/sec)   p_kst 2.128358e-04   p_cons 7.111633e-01   p_joint 9.561194e-04

Joint ci ratio: 6.914459e-02	ci left: 9.226057e-04	ci right 9.889735e-04	k: 3210	n:3360000
Cons ci ratio: 1.362906e-03	ci left: 7.106707e-01	ci right 7.116402e-01	k: 2389483	n:3360000
KS ci ratio: 1.464816e-01	ci left: 1.974851e-04	ci right 2.289820e-04	k: 715	n:3360000
C10orf71   3360000 perm   5064 sec   (664 perm/sec)   p_kst 2.127976e-04   p_cons 7.111557e-01   p_joint 9.553571e-04

Joint ci ratio: 6.909087e-02	ci left: 9.213260e-04	ci right 9.875482e-04	k: 3215	n:3370000
Cons ci ratio: 1.360964e-03	ci left: 7.106469e-01	ci right 7.116150e-01	k: 2396512	n:3370000
KS ci ratio: 1.462775e-01	ci left: 1.974709e-04	ci right 2.289177e-04	k: 717	n:3370000
C10orf71   3370000 perm   5091 sec   (662 perm/sec)   p_kst 2.127596e-04   p_cons 7.111312e-01   p_joint 9.540059e-04

Joint ci ratio: 6.910172e-02	ci left: 9.183094e-04	ci right 9.843255e-04	k: 3214	n:3380000
Cons ci ratio: 1.358936e-03	ci left: 7.106517e-01	ci right 7.116184e-01	k: 2403637	n:3380000
KS ci ratio: 1.459728e-01	ci left: 1.977418e-04	ci right 2.291604e-04	k: 720	n:3380000
C10orf71   3380000 perm   5119 sec   (660 perm/sec)   p_kst 2.130178e-04   p_cons 7.111352e-01   p_joint 9.508876e-04

Joint ci ratio: 6.894103e-02	ci left: 9.199489e-04	ci right 9.859230e-04	k: 3229	n:3390000
Cons ci ratio: 1.356903e-03	ci left: 7.106606e-01	ci right 7.116258e-01	k: 2410776	n:3390000
KS ci ratio: 1.456701e-01	ci left: 1.980111e-04	ci right 2.294017e-04	k: 723	n:3390000
C10orf71   3390000 perm   5147 sec   (659 perm/sec)   p_kst 2.132743e-04   p_cons 7.111434e-01   p_joint 9.525074e-04

Joint ci ratio: 6.881329e-02	ci left: 9.207119e-04	ci right 9.866134e-04	k: 3241	n:3400000
Cons ci ratio: 1.354869e-03	ci left: 7.106726e-01	ci right 7.116364e-01	k: 2417926	n:3400000
KS ci ratio: 1.453692e-01	ci left: 1.982790e-04	ci right 2.296414e-04	k: 726	n:3400000
C10orf71   3400000 perm   5175 sec   (657 perm/sec)   p_kst 2.135294e-04   p_cons 7.111547e-01   p_joint 9.532353e-04

Joint ci ratio: 6.867571e-02	ci left: 9.217586e-04	ci right 9.875979e-04	k: 3254	n:3410000
Cons ci ratio: 1.352865e-03	ci left: 7.106782e-01	ci right 7.116405e-01	k: 2425054	n:3410000
KS ci ratio: 1.451696e-01	ci left: 1.982627e-04	ci right 2.295758e-04	k: 728	n:3410000
C10orf71   3410000 perm   5203 sec   (655 perm/sec)   p_kst 2.134897e-04   p_cons 7.111595e-01   p_joint 9.542522e-04

Joint ci ratio: 6.884538e-02	ci left: 9.144654e-04	ci right 9.799516e-04	k: 3238	n:3420000
Cons ci ratio: 1.350942e-03	ci left: 7.106617e-01	ci right 7.116227e-01	k: 2432107	n:3420000
KS ci ratio: 1.447730e-01	ci left: 1.988101e-04	ci right 2.301165e-04	k: 732	n:3420000
C10orf71   3420000 perm   5231 sec   (654 perm/sec)   p_kst 2.140351e-04   p_cons 7.111424e-01   p_joint 9.467836e-04

Joint ci ratio: 6.880296e-02	ci left: 9.129454e-04	ci right 9.782808e-04	k: 3242	n:3430000
Cons ci ratio: 1.349011e-03	ci left: 7.106501e-01	ci right 7.116096e-01	k: 2439176	n:3430000
KS ci ratio: 1.447730e-01	ci left: 1.982305e-04	ci right 2.294456e-04	k: 732	n:3430000
C10orf71   3430000 perm   5259 sec   (652 perm/sec)   p_kst 2.134111e-04   p_cons 7.111300e-01   p_joint 9.451895e-04

Joint ci ratio: 6.866544e-02	ci left: 9.140056e-04	ci right 9.792810e-04	k: 3255	n:3440000
Cons ci ratio: 1.347041e-03	ci left: 7.106533e-01	ci right 7.116115e-01	k: 2446296	n:3440000
KS ci ratio: 1.445759e-01	ci left: 1.982146e-04	ci right 2.293810e-04	k: 734	n:3440000
C10orf71   3440000 perm   5288 sec   (651 perm/sec)   p_kst 2.133721e-04   p_cons 7.111326e-01   p_joint 9.462209e-04

Joint ci ratio: 6.860229e-02	ci left: 9.130656e-04	ci right 9.782115e-04	k: 3261	n:3450000
Cons ci ratio: 1.344952e-03	ci left: 7.106954e-01	ci right 7.116521e-01	k: 2453550	n:3450000
KS ci ratio: 1.444777e-01	ci left: 1.979195e-04	ci right 2.290165e-04	k: 735	n:3450000
C10orf71   3450000 perm   5316 sec   (649 perm/sec)   p_kst 2.130435e-04   p_cons 7.111739e-01   p_joint 9.452174e-04

Joint ci ratio: 6.845550e-02	ci left: 9.144036e-04	ci right 9.794998e-04	k: 3275	n:3460000
Cons ci ratio: 1.343109e-03	ci left: 7.106649e-01	ci right 7.116203e-01	k: 2460554	n:3460000
KS ci ratio: 1.441841e-01	ci left: 1.981832e-04	ci right 2.292529e-04	k: 738	n:3460000
C10orf71   3460000 perm   5344 sec   (647 perm/sec)   p_kst 2.132948e-04   p_cons 7.111428e-01   p_joint 9.465318e-04

Joint ci ratio: 6.880334e-02	ci left: 9.024214e-04	ci right 9.670040e-04	k: 3242	n:3470000
Cons ci ratio: 1.341116e-03	ci left: 7.106828e-01	ci right 7.116368e-01	k: 2467725	n:3470000
KS ci ratio: 1.437954e-01	ci left: 1.987233e-04	ci right 2.297865e-04	k: 742	n:3470000
C10orf71   3470000 perm   5372 sec   (646 perm/sec)   p_kst 2.138329e-04   p_cons 7.111599e-01   p_joint 9.342939e-04

Joint ci ratio: 6.872922e-02	ci left: 9.018051e-04	ci right 9.662714e-04	k: 3249	n:3480000
Cons ci ratio: 1.339298e-03	ci left: 7.106496e-01	ci right 7.116023e-01	k: 2474719	n:3480000
KS ci ratio: 1.435060e-01	ci left: 1.989833e-04	ci right 2.300192e-04	k: 745	n:3480000
C10orf71   3480000 perm   5400 sec   (644 perm/sec)   p_kst 2.140805e-04   p_cons 7.111261e-01   p_joint 9.336207e-04

Joint ci ratio: 6.694876e-02	ci left: 9.485147e-04	ci right 1.014495e-03	k: 3424	n:3490000
Cons ci ratio: 1.337398e-03	ci left: 7.106439e-01	ci right 7.115953e-01	k: 2481808	n:3490000
KS ci ratio: 1.433140e-01	ci left: 1.989657e-04	ci right 2.299538e-04	k: 747	n:3490000
C10orf71   3490000 perm   5429 sec   (643 perm/sec)   p_kst 2.140401e-04   p_cons 7.111198e-01   p_joint 9.810888e-04

Joint ci ratio: 6.691952e-02	ci left: 9.466474e-04	ci right 1.012468e-03	k: 3427	n:3500000
Cons ci ratio: 1.335473e-03	ci left: 7.106488e-01	ci right 7.115988e-01	k: 2488934	n:3500000
KS ci ratio: 1.431228e-01	ci left: 1.989481e-04	ci right 2.298886e-04	k: 749	n:3500000
C10orf71   3500000 perm   5458 sec   (641 perm/sec)   p_kst 2.140000e-04   p_cons 7.111240e-01   p_joint 9.791429e-04

Joint ci ratio: 6.682212e-02	ci left: 9.467518e-04	ci right 1.012480e-03	k: 3437	n:3510000
Cons ci ratio: 1.333533e-03	ci left: 7.106606e-01	ci right 7.116092e-01	k: 2496084	n:3510000
KS ci ratio: 1.427426e-01	ci left: 1.994802e-04	ci right 2.304140e-04	k: 753	n:3510000
C10orf71   3510000 perm   5487 sec   (640 perm/sec)   p_kst 2.145299e-04   p_cons 7.111350e-01   p_joint 9.792023e-04

Joint ci ratio: 6.672515e-02	ci left: 9.468556e-04	ci right 1.012492e-03	k: 3447	n:3520000
Cons ci ratio: 1.331615e-03	ci left: 7.106683e-01	ci right 7.116155e-01	k: 2503220	n:3520000
KS ci ratio: 1.425537e-01	ci left: 1.994614e-04	ci right 2.303479e-04	k: 755	n:3520000
C10orf71   3520000 perm   5516 sec   (638 perm/sec)   p_kst 2.144886e-04   p_cons 7.111420e-01   p_joint 9.792614e-04

Joint ci ratio: 6.664790e-02	ci left: 9.464018e-04	ci right 1.011928e-03	k: 3455	n:3530000
Cons ci ratio: 1.329747e-03	ci left: 7.106629e-01	ci right 7.116088e-01	k: 2510310	n:3530000
KS ci ratio: 1.424595e-01	ci left: 1.991695e-04	ci right 2.299887e-04	k: 756	n:3530000
C10orf71   3530000 perm   5545 sec   (637 perm/sec)   p_kst 2.141643e-04   p_cons 7.111360e-01   p_joint 9.787535e-04

Joint ci ratio: 6.691012e-02	ci left: 9.362284e-04	ci right 1.001315e-03	k: 3428	n:3540000
Cons ci ratio: 1.327855e-03	ci left: 7.106674e-01	ci right 7.116119e-01	k: 2517435	n:3540000
KS ci ratio: 1.420846e-01	ci left: 1.996966e-04	ci right 2.305091e-04	k: 760	n:3540000
C10orf71   3540000 perm   5574 sec   (635 perm/sec)   p_kst 2.146893e-04   p_cons 7.111398e-01   p_joint 9.683616e-04

Joint ci ratio: 6.680305e-02	ci left: 9.366380e-04	ci right 1.001645e-03	k: 3439	n:3550000
Cons ci ratio: 1.326067e-03	ci left: 7.106423e-01	ci right 7.115855e-01	k: 2524455	n:3550000
KS ci ratio: 1.418053e-01	ci left: 1.999492e-04	ci right 2.307349e-04	k: 763	n:3550000
C10orf71   3550000 perm   5603 sec   (634 perm/sec)   p_kst 2.149296e-04   p_cons 7.111141e-01   p_joint 9.687324e-04

Joint ci ratio: 6.675459e-02	ci left: 9.353880e-04	ci right 1.000260e-03	k: 3444	n:3560000
Cons ci ratio: 1.324163e-03	ci left: 7.106553e-01	ci right 7.115972e-01	k: 2531610	n:3560000
KS ci ratio: 1.417127e-01	ci left: 1.996584e-04	ci right 2.303776e-04	k: 764	n:3560000
C10orf71   3560000 perm   5632 sec   (632 perm/sec)   p_kst 2.146067e-04   p_cons 7.111264e-01   p_joint 9.674157e-04

Joint ci ratio: 6.671593e-02	ci left: 9.338696e-04	ci right 9.985969e-04	k: 3448	n:3570000
Cons ci ratio: 1.322291e-03	ci left: 7.106609e-01	ci right 7.116015e-01	k: 2538739	n:3570000
KS ci ratio: 1.416201e-01	ci left: 1.993693e-04	ci right 2.300223e-04	k: 765	n:3570000
C10orf71   3570000 perm   5661 sec   (631 perm/sec)   p_kst 2.142857e-04   p_cons 7.111314e-01   p_joint 9.658263e-04

Joint ci ratio: 6.700836e-02	ci left: 9.230211e-04	ci right 9.872877e-04	k: 3418	n:3580000
Cons ci ratio: 1.320487e-03	ci left: 7.106481e-01	ci right 7.115873e-01	k: 2545802	n:3580000
KS ci ratio: 1.413436e-01	ci left: 1.996208e-04	ci right 2.302474e-04	k: 768	n:3580000
C10orf71   3580000 perm   5691 sec   (629 perm/sec)   p_kst 2.145251e-04   p_cons 7.111179e-01   p_joint 9.547486e-04

Joint ci ratio: 6.725502e-02	ci left: 9.136029e-04	ci right 9.774571e-04	k: 3393	n:3590000
Cons ci ratio: 1.318556e-03	ci left: 7.106768e-01	ci right 7.116148e-01	k: 2553014	n:3590000
KS ci ratio: 1.411602e-01	ci left: 1.996021e-04	ci right 2.301829e-04	k: 770	n:3590000
C10orf71   3590000 perm   5720 sec   (628 perm/sec)   p_kst 2.144847e-04   p_cons 7.111460e-01   p_joint 9.451253e-04

Joint ci ratio: 6.714628e-02	ci left: 9.140694e-04	ci right 9.778489e-04	k: 3404	n:3600000
Cons ci ratio: 1.316688e-03	ci left: 7.106885e-01	ci right 7.116251e-01	k: 2560165	n:3600000
KS ci ratio: 1.410687e-01	ci left: 1.993157e-04	ci right 2.298310e-04	k: 771	n:3600000
C10orf71   3600000 perm   5749 sec   (626 perm/sec)   p_kst 2.141667e-04   p_cons 7.111569e-01   p_joint 9.455556e-04

Joint ci ratio: 6.720566e-02	ci left: 9.099031e-04	ci right 9.734502e-04	k: 3398	n:3610000
Cons ci ratio: 1.314881e-03	ci left: 7.106837e-01	ci right 7.116190e-01	k: 2567257	n:3610000
KS ci ratio: 1.407954e-01	ci left: 1.995653e-04	ci right 2.300547e-04	k: 774	n:3610000
C10orf71   3610000 perm   5778 sec   (625 perm/sec)   p_kst 2.144044e-04   p_cons 7.111515e-01   p_joint 9.412742e-04

Joint ci ratio: 6.551981e-02	ci left: 9.554741e-04	ci right 1.020466e-03	k: 3575	n:3620000
Cons ci ratio: 1.313048e-03	ci left: 7.106892e-01	ci right 7.116232e-01	k: 2574386	n:3620000
KS ci ratio: 1.402535e-01	ci left: 2.006132e-04	ci right 2.311349e-04	k: 780	n:3620000
C10orf71   3620000 perm   5807 sec   (623 perm/sec)   p_kst 2.154696e-04   p_cons 7.111564e-01   p_joint 9.875691e-04

Joint ci ratio: 6.544666e-02	ci left: 9.550097e-04	ci right 1.019895e-03	k: 3583	n:3630000
Cons ci ratio: 1.311250e-03	ci left: 7.106861e-01	ci right 7.116188e-01	k: 2581484	n:3630000
KS ci ratio: 1.400742e-01	ci left: 2.005922e-04	ci right 2.310684e-04	k: 782	n:3630000
C10orf71   3630000 perm   5836 sec   (622 perm/sec)   p_kst 2.154270e-04   p_cons 7.111526e-01   p_joint 9.870523e-04

Joint ci ratio: 6.540110e-02	ci left: 9.537372e-04	ci right 1.018489e-03	k: 3588	n:3640000
Cons ci ratio: 1.309442e-03	ci left: 7.106885e-01	ci right 7.116200e-01	k: 2588602	n:3640000
KS ci ratio: 1.399849e-01	ci left: 2.003062e-04	ci right 2.307180e-04	k: 783	n:3640000
C10orf71   3640000 perm   5865 sec   (621 perm/sec)   p_kst 2.151099e-04   p_cons 7.111544e-01   p_joint 9.857143e-04

Joint ci ratio: 6.530110e-02	ci left: 9.540887e-04	ci right 1.018762e-03	k: 3599	n:3650000
Cons ci ratio: 1.307606e-03	ci left: 7.107021e-01	ci right 7.116323e-01	k: 2595761	n:3650000
KS ci ratio: 1.398067e-01	ci left: 2.002862e-04	ci right 2.306530e-04	k: 785	n:3650000
C10orf71   3650000 perm   5895 sec   (619 perm/sec)   p_kst 2.150685e-04   p_cons 7.111674e-01   p_joint 9.860274e-04

Joint ci ratio: 6.522868e-02	ci left: 9.536320e-04	ci right 1.018200e-03	k: 3607	n:3660000
Cons ci ratio: 1.305754e-03	ci left: 7.107228e-01	ci right 7.116517e-01	k: 2602946	n:3660000
KS ci ratio: 1.398067e-01	ci left: 1.997389e-04	ci right 2.300228e-04	k: 785	n:3660000
C10orf71   3660000 perm   5924 sec   (618 perm/sec)   p_kst 2.144809e-04   p_cons 7.111874e-01   p_joint 9.855191e-04

Joint ci ratio: 6.508447e-02	ci left: 9.553222e-04	ci right 1.019856e-03	k: 3623	n:3670000
Cons ci ratio: 1.304006e-03	ci left: 7.107134e-01	ci right 7.116410e-01	k: 2610021	n:3670000
KS ci ratio: 1.393641e-01	ci left: 2.005095e-04	ci right 2.308059e-04	k: 790	n:3670000
C10orf71   3670000 perm   5954 sec   (616 perm/sec)   p_kst 2.152589e-04   p_cons 7.111774e-01   p_joint 9.871935e-04

Joint ci ratio: 6.498591e-02	ci left: 9.556668e-04	ci right 1.020123e-03	k: 3634	n:3680000
Cons ci ratio: 1.302200e-03	ci left: 7.107244e-01	ci right 7.116508e-01	k: 2617171	n:3680000
KS ci ratio: 1.393642e-01	ci left: 1.999646e-04	ci right 2.301788e-04	k: 790	n:3680000
C10orf71   3680000 perm   5985 sec   (615 perm/sec)   p_kst 2.146739e-04   p_cons 7.111878e-01   p_joint 9.875000e-04

Joint ci ratio: 6.485219e-02	ci left: 9.570760e-04	ci right 1.021489e-03	k: 3649	n:3690000
Cons ci ratio: 1.300415e-03	ci left: 7.107313e-01	ci right 7.116564e-01	k: 2624306	n:3690000
KS ci ratio: 1.390131e-01	ci left: 2.004690e-04	ci right 2.306767e-04	k: 794	n:3690000
C10orf71   3690000 perm   6015 sec   (613 perm/sec)   p_kst 2.151762e-04   p_cons 7.111940e-01   p_joint 9.888889e-04

Joint ci ratio: 6.475468e-02	ci left: 9.574141e-04	ci right 1.021749e-03	k: 3660	n:3700000
Cons ci ratio: 1.298620e-03	ci left: 7.107433e-01	ci right 7.116672e-01	k: 2631460	n:3700000
KS ci ratio: 1.388385e-01	ci left: 2.004490e-04	ci right 2.306126e-04	k: 796	n:3700000
C10orf71   3700000 perm   6046 sec   (612 perm/sec)   p_kst 2.151351e-04   p_cons 7.112054e-01   p_joint 9.891892e-04

Joint ci ratio: 6.466642e-02	ci left: 9.574852e-04	ci right 1.021734e-03	k: 3670	n:3710000
Cons ci ratio: 1.296952e-03	ci left: 7.107175e-01	ci right 7.116401e-01	k: 2638474	n:3710000
KS ci ratio: 1.384914e-01	ci left: 2.009494e-04	ci right 2.311065e-04	k: 800	n:3710000
C10orf71   3710000 perm   6076 sec   (611 perm/sec)   p_kst 2.156334e-04   p_cons 7.111790e-01   p_joint 9.892183e-04

Joint ci ratio: 6.459609e-02	ci left: 9.570271e-04	ci right 1.021173e-03	k: 3678	n:3720000
Cons ci ratio: 1.295180e-03	ci left: 7.107271e-01	ci right 7.116484e-01	k: 2645619	n:3720000
KS ci ratio: 1.384915e-01	ci left: 2.004092e-04	ci right 2.304853e-04	k: 800	n:3720000
C10orf71   3720000 perm   6107 sec   (609 perm/sec)   p_kst 2.150538e-04   p_cons 7.111879e-01   p_joint 9.887097e-04

Joint ci ratio: 6.451723e-02	ci left: 9.568353e-04	ci right 1.020887e-03	k: 3687	n:3730000
Cons ci ratio: 1.293473e-03	ci left: 7.107180e-01	ci right 7.116382e-01	k: 2652695	n:3730000
KS ci ratio: 1.383189e-01	ci left: 2.003896e-04	ci right 2.304221e-04	k: 802	n:3730000
C10orf71   3730000 perm   6138 sec   (608 perm/sec)   p_kst 2.150134e-04   p_cons 7.111783e-01   p_joint 9.884718e-04

Joint ci ratio: 6.441251e-02	ci left: 9.574338e-04	ci right 1.021418e-03	k: 3699	n:3740000
Cons ci ratio: 1.291680e-03	ci left: 7.107385e-01	ci right 7.116574e-01	k: 2659881	n:3740000
KS ci ratio: 1.380612e-01	ci left: 2.006282e-04	ci right 2.306358e-04	k: 805	n:3740000
C10orf71   3740000 perm   6168 sec   (606 perm/sec)   p_kst 2.152406e-04   p_cons 7.111981e-01   p_joint 9.890374e-04

Joint ci ratio: 6.425633e-02	ci left: 9.596034e-04	ci right 1.023571e-03	k: 3717	n:3750000
Cons ci ratio: 1.289940e-03	ci left: 7.107445e-01	ci right 7.116621e-01	k: 2667013	n:3750000
KS ci ratio: 1.378902e-01	ci left: 2.006081e-04	ci right 2.305725e-04	k: 807	n:3750000
C10orf71   3750000 perm   6198 sec   (605 perm/sec)   p_kst 2.152000e-04   p_cons 7.112035e-01   p_joint 9.912000e-04

Joint ci ratio: 6.417871e-02	ci left: 9.594065e-04	ci right 1.023281e-03	k: 3726	n:3760000
Cons ci ratio: 1.288227e-03	ci left: 7.107440e-01	ci right 7.116605e-01	k: 2674121	n:3760000
KS ci ratio: 1.376350e-01	ci left: 2.008449e-04	ci right 2.307847e-04	k: 810	n:3760000
C10orf71   3760000 perm   6229 sec   (604 perm/sec)   p_kst 2.154255e-04   p_cons 7.112024e-01   p_joint 9.909574e-04

Joint ci ratio: 6.412714e-02	ci left: 9.584276e-04	ci right 1.022184e-03	k: 3732	n:3770000
Cons ci ratio: 1.286497e-03	ci left: 7.107510e-01	ci right 7.116662e-01	k: 2681257	n:3770000
KS ci ratio: 1.373811e-01	ci left: 2.010806e-04	ci right 2.309956e-04	k: 813	n:3770000
C10orf71   3770000 perm   6260 sec   (602 perm/sec)   p_kst 2.156499e-04   p_cons 7.112088e-01   p_joint 9.899204e-04

Joint ci ratio: 6.416165e-02	ci left: 9.548508e-04	ci right 1.018404e-03	k: 3728	n:3780000
Cons ci ratio: 1.284787e-03	ci left: 7.107539e-01	ci right 7.116680e-01	k: 2688378	n:3780000
KS ci ratio: 1.371286e-01	ci left: 2.013150e-04	ci right 2.312054e-04	k: 816	n:3780000
C10orf71   3780000 perm   6291 sec   (601 perm/sec)   p_kst 2.158730e-04   p_cons 7.112111e-01   p_joint 9.862434e-04

Joint ci ratio: 6.407579e-02	ci left: 9.549276e-04	ci right 1.018398e-03	k: 3738	n:3790000
Cons ci ratio: 1.283122e-03	ci left: 7.107445e-01	ci right 7.116573e-01	k: 2695452	n:3790000
KS ci ratio: 1.368775e-01	ci left: 2.015483e-04	ci right 2.314140e-04	k: 819	n:3790000
C10orf71   3790000 perm   6324 sec   (599 perm/sec)   p_kst 2.160950e-04   p_cons 7.112011e-01   p_joint 9.862797e-04

Joint ci ratio: 6.394760e-02	ci left: 9.562989e-04	ci right 1.019729e-03	k: 3753	n:3800000
Cons ci ratio: 1.281431e-03	ci left: 7.107456e-01	ci right 7.116572e-01	k: 2702566	n:3800000
KS ci ratio: 1.367941e-01	ci left: 2.012720e-04	ci right 2.310772e-04	k: 820	n:3800000
C10orf71   3800000 perm   6355 sec   (598 perm/sec)   p_kst 2.157895e-04   p_cons 7.112016e-01   p_joint 9.876316e-04

Joint ci ratio: 6.387959e-02	ci left: 9.558551e-04	ci right 1.019185e-03	k: 3761	n:3810000
Cons ci ratio: 1.279710e-03	ci left: 7.107586e-01	ci right 7.116689e-01	k: 2709725	n:3810000
KS ci ratio: 1.366278e-01	ci left: 2.012507e-04	ci right 2.310136e-04	k: 822	n:3810000
C10orf71   3810000 perm   6386 sec   (597 perm/sec)   p_kst 2.157480e-04   p_cons 7.112139e-01   p_joint 9.871391e-04

Joint ci ratio: 6.380332e-02	ci left: 9.556712e-04	ci right 1.018911e-03	k: 3770	n:3820000
Cons ci ratio: 1.277888e-03	ci left: 7.108060e-01	ci right 7.117152e-01	k: 2717016	n:3820000
KS ci ratio: 1.366279e-01	ci left: 2.007239e-04	ci right 2.304088e-04	k: 822	n:3820000
C10orf71   3820000 perm   6417 sec   (595 perm/sec)   p_kst 2.151832e-04   p_cons 7.112607e-01   p_joint 9.869110e-04

Joint ci ratio: 6.372733e-02	ci left: 9.554884e-04	ci right 1.018638e-03	k: 3779	n:3830000
Cons ci ratio: 1.276265e-03	ci left: 7.107918e-01	ci right 7.116998e-01	k: 2724072	n:3830000
KS ci ratio: 1.364622e-01	ci left: 2.007042e-04	ci right 2.303473e-04	k: 824	n:3830000
C10orf71   3830000 perm   6448 sec   (594 perm/sec)   p_kst 2.151436e-04   p_cons 7.112460e-01   p_joint 9.866841e-04

Joint ci ratio: 6.368526e-02	ci left: 9.542815e-04	ci right 1.017308e-03	k: 3784	n:3840000
Cons ci ratio: 1.274644e-03	ci left: 7.107787e-01	ci right 7.116855e-01	k: 2731132	n:3840000
KS ci ratio: 1.364622e-01	ci left: 2.001815e-04	ci right 2.297474e-04	k: 824	n:3840000
C10orf71   3840000 perm   6480 sec   (593 perm/sec)   p_kst 2.145833e-04   p_cons 7.112323e-01   p_joint 9.854167e-04

Joint ci ratio: 6.363487e-02	ci left: 9.533364e-04	ci right 1.016249e-03	k: 3790	n:3850000
Cons ci ratio: 1.273073e-03	ci left: 7.107517e-01	ci right 7.116573e-01	k: 2738138	n:3850000
KS ci ratio: 1.362971e-01	ci left: 2.001633e-04	ci right 2.296879e-04	k: 826	n:3850000
C10orf71   3850000 perm   6511 sec   (591 perm/sec)   p_kst 2.145455e-04   p_cons 7.112047e-01   p_joint 9.844156e-04

Joint ci ratio: 6.355111e-02	ci left: 9.534161e-04	ci right 1.016248e-03	k: 3800	n:3860000
Cons ci ratio: 1.271405e-03	ci left: 7.107582e-01	ci right 7.116627e-01	k: 2745273	n:3860000
KS ci ratio: 1.362148e-01	ci left: 1.998950e-04	ci right 2.293607e-04	k: 827	n:3860000
C10orf71   3860000 perm   6543 sec   (590 perm/sec)   p_kst 2.142487e-04   p_cons 7.112106e-01   p_joint 9.844560e-04

Joint ci ratio: 6.346768e-02	ci left: 9.534955e-04	ci right 1.016247e-03	k: 3810	n:3870000
Cons ci ratio: 1.269752e-03	ci left: 7.107616e-01	ci right 7.116649e-01	k: 2752396	n:3870000
KS ci ratio: 1.358869e-01	ci left: 2.003769e-04	ci right 2.298368e-04	k: 831	n:3870000
C10orf71   3870000 perm   6575 sec   (589 perm/sec)   p_kst 2.147287e-04   p_cons 7.112134e-01   p_joint 9.844961e-04

Joint ci ratio: 6.359315e-02	ci left: 9.472334e-04	ci right 1.009701e-03	k: 3795	n:3880000
Cons ci ratio: 1.268183e-03	ci left: 7.107403e-01	ci right 7.116424e-01	k: 2759423	n:3880000
KS ci ratio: 1.356426e-01	ci left: 2.006074e-04	ci right 2.300439e-04	k: 834	n:3880000
C10orf71   3880000 perm   6606 sec   (587 perm/sec)   p_kst 2.149485e-04   p_cons 7.111915e-01   p_joint 9.780928e-04

Joint ci ratio: 6.349286e-02	ci left: 9.478341e-04	ci right 1.010239e-03	k: 3807	n:3890000
Cons ci ratio: 1.266517e-03	ci left: 7.107522e-01	ci right 7.116532e-01	k: 2766579	n:3890000
KS ci ratio: 1.353995e-01	ci left: 2.008367e-04	ci right 2.302498e-04	k: 837	n:3890000
C10orf71   3890000 perm   6638 sec   (586 perm/sec)   p_kst 2.151671e-04   p_cons 7.112028e-01   p_joint 9.786632e-04

Joint ci ratio: 6.343460e-02	ci left: 9.471702e-04	ci right 1.009472e-03	k: 3814	n:3900000
Cons ci ratio: 1.264941e-03	ci left: 7.107368e-01	ci right 7.116367e-01	k: 2773629	n:3900000
KS ci ratio: 1.352383e-01	ci left: 2.008172e-04	ci right 2.301896e-04	k: 839	n:3900000
C10orf71   3900000 perm   6669 sec   (585 perm/sec)   p_kst 2.151282e-04   p_cons 7.111869e-01   p_joint 9.779487e-04

Joint ci ratio: 6.336821e-02	ci left: 9.467613e-04	ci right 1.008969e-03	k: 3822	n:3910000
Cons ci ratio: 1.263314e-03	ci left: 7.107403e-01	ci right 7.116390e-01	k: 2780752	n:3910000
KS ci ratio: 1.350776e-01	ci left: 2.007978e-04	ci right 2.301297e-04	k: 841	n:3910000
C10orf71   3910000 perm   6701 sec   (583 perm/sec)   p_kst 2.150895e-04   p_cons 7.111898e-01   p_joint 9.774936e-04

Joint ci ratio: 6.334342e-02	ci left: 9.450993e-04	ci right 1.007172e-03	k: 3825	n:3920000
Cons ci ratio: 1.261675e-03	ci left: 7.107493e-01	ci right 7.116468e-01	k: 2787897	n:3920000
KS ci ratio: 1.349174e-01	ci left: 2.007786e-04	ci right 2.300701e-04	k: 843	n:3920000
C10orf71   3920000 perm   6733 sec   (582 perm/sec)   p_kst 2.150510e-04   p_cons 7.111982e-01   p_joint 9.757653e-04

Joint ci ratio: 6.326905e-02	ci left: 9.449483e-04	ci right 1.006936e-03	k: 3834	n:3930000
Cons ci ratio: 1.260008e-03	ci left: 7.107697e-01	ci right 7.116661e-01	k: 2795087	n:3930000
KS ci ratio: 1.348376e-01	ci left: 2.005136e-04	ci right 2.297477e-04	k: 844	n:3930000
C10orf71   3930000 perm   6765 sec   (581 perm/sec)   p_kst 2.147583e-04   p_cons 7.112181e-01   p_joint 9.755725e-04

Joint ci ratio: 6.317028e-02	ci left: 9.455475e-04	ci right 1.007474e-03	k: 3846	n:3940000
Cons ci ratio: 1.258427e-03	ci left: 7.107642e-01	ci right 7.116594e-01	k: 2802175	n:3940000
KS ci ratio: 1.345195e-01	ci left: 2.009857e-04	ci right 2.302140e-04	k: 848	n:3940000
C10orf71   3940000 perm   6797 sec   (580 perm/sec)   p_kst 2.152284e-04   p_cons 7.112119e-01   p_joint 9.761421e-04

Joint ci ratio: 6.312110e-02	ci left: 9.446487e-04	ci right 1.006466e-03	k: 3852	n:3950000
Cons ci ratio: 1.256830e-03	ci left: 7.107657e-01	ci right 7.116598e-01	k: 2809291	n:3950000
KS ci ratio: 1.343614e-01	ci left: 2.009661e-04	ci right 2.301545e-04	k: 850	n:3950000
C10orf71   3950000 perm   6831 sec   (578 perm/sec)   p_kst 2.151899e-04   p_cons 7.112129e-01   p_joint 9.751899e-04

Joint ci ratio: 6.316222e-02	ci left: 9.410205e-04	ci right 1.002642e-03	k: 3847	n:3960000
Cons ci ratio: 1.255248e-03	ci left: 7.107642e-01	ci right 7.116572e-01	k: 2816395	n:3960000
KS ci ratio: 1.342825e-01	ci left: 2.007027e-04	ci right 2.298343e-04	k: 851	n:3960000
C10orf71   3960000 perm   6864 sec   (577 perm/sec)   p_kst 2.148990e-04   p_cons 7.112109e-01   p_joint 9.714646e-04

Joint ci ratio: 6.308849e-02	ci left: 9.408814e-04	ci right 1.002420e-03	k: 3856	n:3970000
Cons ci ratio: 1.253682e-03	ci left: 7.107597e-01	ci right 7.116516e-01	k: 2823487	n:3970000
KS ci ratio: 1.341252e-01	ci left: 2.006840e-04	ci right 2.297761e-04	k: 853	n:3970000
C10orf71   3970000 perm   6897 sec   (576 perm/sec)   p_kst 2.148615e-04   p_cons 7.112058e-01   p_joint 9.712846e-04

Joint ci ratio: 6.302318e-02	ci left: 9.404957e-04	ci right 1.001943e-03	k: 3864	n:3980000
Cons ci ratio: 1.252084e-03	ci left: 7.107675e-01	ci right 7.116583e-01	k: 2830628	n:3980000
KS ci ratio: 1.337342e-01	ci left: 2.013940e-04	ci right 2.304971e-04	k: 858	n:3980000
C10orf71   3980000 perm   6929 sec   (574 perm/sec)   p_kst 2.155779e-04   p_cons 7.112131e-01   p_joint 9.708543e-04

Joint ci ratio: 6.310502e-02	ci left: 9.356717e-04	ci right 9.968858e-04	k: 3854	n:3990000
Cons ci ratio: 1.250511e-03	ci left: 7.107691e-01	ci right 7.116587e-01	k: 2837744	n:3990000
KS ci ratio: 1.335013e-01	ci left: 2.016160e-04	ci right 2.306964e-04	k: 861	n:3990000
C10orf71   3990000 perm   6962 sec   (573 perm/sec)   p_kst 2.157895e-04   p_cons 7.112140e-01   p_joint 9.659148e-04

Joint ci ratio: 6.301517e-02	ci left: 9.360392e-04	ci right 9.971869e-04	k: 3865	n:4000000
Cons ci ratio: 1.248913e-03	ci left: 7.107806e-01	ci right 7.116691e-01	k: 2844900	n:4000000
KS ci ratio: 1.333467e-01	ci left: 2.015952e-04	ci right 2.306363e-04	k: 863	n:4000000
C10orf71   4000000 perm   6994 sec   (572 perm/sec)   p_kst 2.157500e-04   p_cons 7.112250e-01   p_joint 9.662500e-04

Joint ci ratio: 6.293383e-02	ci left: 9.361594e-04	ci right 9.972332e-04	k: 3875	n:4010000
Cons ci ratio: 1.247386e-03	ci left: 7.107711e-01	ci right 7.116585e-01	k: 2851972	n:4010000
KS ci ratio: 1.331926e-01	ci left: 2.015746e-04	ci right 2.305765e-04	k: 865	n:4010000
C10orf71   4010000 perm   7026 sec   (571 perm/sec)   p_kst 2.157107e-04   p_cons 7.112150e-01   p_joint 9.663342e-04

Joint ci ratio: 6.287710e-02	ci left: 9.355446e-04	ci right 9.965212e-04	k: 3882	n:4020000
Cons ci ratio: 1.245837e-03	ci left: 7.107704e-01	ci right 7.116567e-01	k: 2859079	n:4020000
KS ci ratio: 1.330391e-01	ci left: 2.015541e-04	ci right 2.305170e-04	k: 867	n:4020000
C10orf71   4020000 perm   7059 sec   (570 perm/sec)   p_kst 2.156716e-04   p_cons 7.112137e-01   p_joint 9.656716e-04

Joint ci ratio: 6.278821e-02	ci left: 9.359098e-04	ci right 9.968208e-04	k: 3893	n:4030000
Cons ci ratio: 1.244297e-03	ci left: 7.107687e-01	ci right 7.116539e-01	k: 2866182	n:4030000
KS ci ratio: 1.328861e-01	ci left: 2.015338e-04	ci right 2.304578e-04	k: 869	n:4030000
C10orf71   4030000 perm   7091 sec   (568 perm/sec)   p_kst 2.156328e-04   p_cons 7.112114e-01   p_joint 9.660050e-04

Joint ci ratio: 6.272383e-02	ci left: 9.355423e-04	ci right 9.963647e-04	k: 3901	n:4040000
Cons ci ratio: 1.242726e-03	ci left: 7.107791e-01	ci right 7.116632e-01	k: 2873334	n:4040000
KS ci ratio: 1.325816e-01	ci left: 2.019922e-04	ci right 2.309103e-04	k: 873	n:4040000
C10orf71   4040000 perm   7124 sec   (567 perm/sec)   p_kst 2.160891e-04   p_cons 7.112213e-01   p_joint 9.655941e-04

Joint ci ratio: 6.263559e-02	ci left: 9.359058e-04	ci right 9.966632e-04	k: 3912	n:4050000
Cons ci ratio: 1.241181e-03	ci left: 7.107830e-01	ci right 7.116660e-01	k: 2880460	n:4050000
KS ci ratio: 1.321288e-01	ci left: 2.029258e-04	ci right 2.318707e-04	k: 879	n:4050000
C10orf71   4050000 perm   7156 sec   (566 perm/sec)   p_kst 2.170370e-04   p_cons 7.112247e-01   p_joint 9.659259e-04

Joint ci ratio: 6.261965e-02	ci left: 9.340855e-04	ci right 9.947087e-04	k: 3914	n:4060000
Cons ci ratio: 1.239644e-03	ci left: 7.107860e-01	ci right 7.116679e-01	k: 2887582	n:4060000
KS ci ratio: 1.320538e-01	ci left: 2.026642e-04	ci right 2.315540e-04	k: 880	n:4060000
C10orf71   4060000 perm   7189 sec   (565 perm/sec)   p_kst 2.167488e-04   p_cons 7.112271e-01   p_joint 9.640394e-04

Joint ci ratio: 6.257974e-02	ci left: 9.329997e-04	ci right 9.935124e-04	k: 3919	n:4070000
Cons ci ratio: 1.238075e-03	ci left: 7.108017e-01	ci right 7.116825e-01	k: 2894756	n:4070000
KS ci ratio: 1.319789e-01	ci left: 2.024038e-04	ci right 2.312389e-04	k: 881	n:4070000
C10orf71   4070000 perm   7222 sec   (564 perm/sec)   p_kst 2.164619e-04   p_cons 7.112423e-01   p_joint 9.628993e-04

Joint ci ratio: 6.282897e-02	ci left: 9.232339e-04	ci right 9.833604e-04	k: 3888	n:4080000
Cons ci ratio: 1.236566e-03	ci left: 7.107990e-01	ci right 7.116787e-01	k: 2901855	n:4080000
KS ci ratio: 1.316807e-01	ci left: 2.028558e-04	ci right 2.316848e-04	k: 885	n:4080000
C10orf71   4080000 perm   7256 sec   (562 perm/sec)   p_kst 2.169118e-04   p_cons 7.112390e-01   p_joint 9.529412e-04

Joint ci ratio: 6.278059e-02	ci left: 9.224205e-04	ci right 9.824461e-04	k: 3894	n:4090000
Cons ci ratio: 1.234982e-03	ci left: 7.108234e-01	ci right 7.117020e-01	k: 2909065	n:4090000
KS ci ratio: 1.316064e-01	ci left: 2.025963e-04	ci right 2.313709e-04	k: 886	n:4090000
C10orf71   4090000 perm   7289 sec   (561 perm/sec)   p_kst 2.166259e-04   p_cons 7.112628e-01   p_joint 9.520782e-04

Joint ci ratio: 6.329512e-02	ci left: 9.050468e-04	ci right 9.644422e-04	k: 3831	n:4100000
Cons ci ratio: 1.233445e-03	ci left: 7.108338e-01	ci right 7.117113e-01	k: 2916218	n:4100000
KS ci ratio: 1.314583e-01	ci left: 2.025739e-04	ci right 2.313104e-04	k: 888	n:4100000
C10orf71   4100000 perm   7323 sec   (560 perm/sec)   p_kst 2.165854e-04   p_cons 7.112727e-01   p_joint 9.343902e-04

Joint ci ratio: 6.343619e-02	ci left: 8.987739e-04	ci right 9.578939e-04	k: 3814	n:4110000
Cons ci ratio: 1.231880e-03	ci left: 7.108555e-01	ci right 7.117320e-01	k: 2923418	n:4110000
KS ci ratio: 1.313107e-01	ci left: 2.025516e-04	ci right 2.312502e-04	k: 890	n:4110000
C10orf71   4110000 perm   7356 sec   (559 perm/sec)   p_kst 2.165450e-04   p_cons 7.112939e-01   p_joint 9.279805e-04

Joint ci ratio: 6.337809e-02	ci left: 8.982645e-04	ci right 9.572949e-04	k: 3821	n:4120000
Cons ci ratio: 1.230369e-03	ci left: 7.108612e-01	ci right 7.117366e-01	k: 2930552	n:4120000
KS ci ratio: 1.313107e-01	ci left: 2.020600e-04	ci right 2.306890e-04	k: 890	n:4120000
C10orf71   4120000 perm   7389 sec   (558 perm/sec)   p_kst 2.160194e-04   p_cons 7.112990e-01   p_joint 9.274272e-04

Joint ci ratio: 6.331187e-02	ci left: 8.979959e-04	ci right 9.569447e-04	k: 3829	n:4130000
Cons ci ratio: 1.228865e-03	ci left: 7.108663e-01	ci right 7.117406e-01	k: 2937684	n:4130000
KS ci ratio: 1.311636e-01	ci left: 2.020391e-04	ci right 2.306305e-04	k: 892	n:4130000
C10orf71   4130000 perm   7423 sec   (556 perm/sec)   p_kst 2.159806e-04   p_cons 7.113036e-01   p_joint 9.271186e-04

Joint ci ratio: 6.327888e-02	ci left: 8.967777e-04	ci right 9.556147e-04	k: 3833	n:4140000
Cons ci ratio: 1.227386e-03	ci left: 7.108647e-01	ci right 7.117379e-01	k: 2944788	n:4140000
KS ci ratio: 1.311636e-01	ci left: 2.015511e-04	ci right 2.300735e-04	k: 892	n:4140000
C10orf71   4140000 perm   7457 sec   (555 perm/sec)   p_kst 2.154589e-04   p_cons 7.113014e-01   p_joint 9.258454e-04

Joint ci ratio: 6.318828e-02	ci left: 8.972255e-04	ci right 9.560046e-04	k: 3844	n:4150000
Cons ci ratio: 1.225889e-03	ci left: 7.108710e-01	ci right 7.117432e-01	k: 2951925	n:4150000
KS ci ratio: 1.310903e-01	ci left: 2.012985e-04	ci right 2.297679e-04	k: 893	n:4150000
C10orf71   4150000 perm   7490 sec   (554 perm/sec)   p_kst 2.151807e-04   p_cons 7.113072e-01   p_joint 9.262651e-04

Joint ci ratio: 6.314727e-02	ci left: 8.962516e-04	ci right 9.549274e-04	k: 3849	n:4160000
Cons ci ratio: 1.224452e-03	ci left: 7.108590e-01	ci right 7.117301e-01	k: 2958986	n:4160000
KS ci ratio: 1.309439e-01	ci left: 2.012796e-04	ci right 2.297121e-04	k: 895	n:4160000
C10orf71   4160000 perm   7524 sec   (553 perm/sec)   p_kst 2.151442e-04   p_cons 7.112947e-01   p_joint 9.252404e-04

Joint ci ratio: 6.304090e-02	ci left: 8.971707e-04	ci right 9.558041e-04	k: 3862	n:4170000
Cons ci ratio: 1.222954e-03	ci left: 7.108694e-01	ci right 7.117395e-01	k: 2966140	n:4170000
KS ci ratio: 1.305800e-01	ci left: 2.019567e-04	ci right 2.303995e-04	k: 900	n:4170000
C10orf71   4170000 perm   7558 sec   (552 perm/sec)   p_kst 2.158273e-04   p_cons 7.113046e-01   p_joint 9.261391e-04

Joint ci ratio: 6.300017e-02	ci left: 8.962016e-04	ci right 9.547325e-04	k: 3867	n:4180000
Cons ci ratio: 1.221435e-03	ci left: 7.108885e-01	ci right 7.117576e-01	k: 2973331	n:4180000
KS ci ratio: 1.305076e-01	ci left: 2.017050e-04	ci right 2.300954e-04	k: 901	n:4180000
C10orf71   4180000 perm   7591 sec   (551 perm/sec)   p_kst 2.155502e-04   p_cons 7.113232e-01   p_joint 9.251196e-04

Joint ci ratio: 6.295953e-02	ci left: 8.952373e-04	ci right 9.536660e-04	k: 3872	n:4190000
Cons ci ratio: 1.219967e-03	ci left: 7.108923e-01	ci right 7.117604e-01	k: 2980458	n:4190000
KS ci ratio: 1.302911e-01	ci left: 2.019163e-04	ci right 2.302855e-04	k: 904	n:4190000
C10orf71   4190000 perm   7626 sec   (549 perm/sec)   p_kst 2.157518e-04   p_cons 7.113265e-01   p_joint 9.241050e-04

Joint ci ratio: 6.290272e-02	ci left: 8.947462e-04	ci right 9.530883e-04	k: 3879	n:4200000
Cons ci ratio: 1.218488e-03	ci left: 7.109014e-01	ci right 7.117683e-01	k: 2987607	n:4200000
KS ci ratio: 1.302192e-01	ci left: 2.016658e-04	ci right 2.299831e-04	k: 905	n:4200000
C10orf71   4200000 perm   7660 sec   (548 perm/sec)   p_kst 2.154762e-04   p_cons 7.113350e-01   p_joint 9.235714e-04

Joint ci ratio: 6.281373e-02	ci left: 8.951927e-04	ci right 9.534783e-04	k: 3890	n:4210000
Cons ci ratio: 1.217023e-03	ci left: 7.109077e-01	ci right 7.117737e-01	k: 2994745	n:4210000
KS ci ratio: 1.301474e-01	ci left: 2.014166e-04	ci right 2.296821e-04	k: 906	n:4210000
C10orf71   4210000 perm   7695 sec   (547 perm/sec)   p_kst 2.152019e-04   p_cons 7.113409e-01   p_joint 9.239905e-04

Joint ci ratio: 6.274927e-02	ci left: 8.949373e-04	ci right 9.531443e-04	k: 3898	n:4220000
Cons ci ratio: 1.215571e-03	ci left: 7.109112e-01	ci right 7.117761e-01	k: 3001871	n:4220000
KS ci ratio: 1.300042e-01	ci left: 2.013978e-04	ci right 2.296271e-04	k: 908	n:4220000
C10orf71   4220000 perm   7729 sec   (546 perm/sec)   p_kst 2.151659e-04   p_cons 7.113438e-01   p_joint 9.236967e-04

Joint ci ratio: 6.265291e-02	ci left: 8.956140e-04	ci right 9.537724e-04	k: 3910	n:4230000
Cons ci ratio: 1.214123e-03	ci left: 7.109152e-01	ci right 7.117791e-01	k: 3008999	n:4230000
KS ci ratio: 1.298614e-01	ci left: 2.013792e-04	ci right 2.295725e-04	k: 910	n:4230000
C10orf71   4230000 perm   7763 sec   (545 perm/sec)   p_kst 2.151300e-04   p_cons 7.113473e-01   p_joint 9.243499e-04

Joint ci ratio: 6.258894e-02	ci left: 8.953590e-04	ci right 9.534393e-04	k: 3918	n:4240000
Cons ci ratio: 1.212741e-03	ci left: 7.108988e-01	ci right 7.117617e-01	k: 3016041	n:4240000
KS ci ratio: 1.296481e-01	ci left: 2.015888e-04	ci right 2.297615e-04	k: 913	n:4240000
C10orf71   4240000 perm   7798 sec   (544 perm/sec)   p_kst 2.153302e-04   p_cons 7.113304e-01   p_joint 9.240566e-04

Joint ci ratio: 6.248536e-02	ci left: 8.962633e-04	ci right 9.543025e-04	k: 3931	n:4250000
Cons ci ratio: 1.211276e-03	ci left: 7.109118e-01	ci right 7.117736e-01	k: 3023207	n:4250000
KS ci ratio: 1.294358e-01	ci left: 2.017975e-04	ci right 2.299496e-04	k: 916	n:4250000
C10orf71   4250000 perm   7834 sec   (542 perm/sec)   p_kst 2.155294e-04   p_cons 7.113428e-01   p_joint 9.249412e-04

Joint ci ratio: 6.238229e-02	ci left: 8.971634e-04	ci right 9.551616e-04	k: 3944	n:4260000
Cons ci ratio: 1.209853e-03	ci left: 7.109126e-01	ci right 7.117735e-01	k: 3030322	n:4260000
KS ci ratio: 1.291544e-01	ci left: 2.022324e-04	ci right 2.303792e-04	k: 920	n:4260000
C10orf71   4260000 perm   7869 sec   (541 perm/sec)   p_kst 2.159624e-04   p_cons 7.113432e-01   p_joint 9.258216e-04

Joint ci ratio: 6.227973e-02	ci left: 8.980594e-04	ci right 9.560166e-04	k: 3957	n:4270000
Cons ci ratio: 1.208472e-03	ci left: 7.109006e-01	ci right 7.117605e-01	k: 3037382	n:4270000
KS ci ratio: 1.290844e-01	ci left: 2.019854e-04	ci right 2.300814e-04	k: 921	n:4270000
C10orf71   4270000 perm   7903 sec   (540 perm/sec)   p_kst 2.156909e-04   p_cons 7.113307e-01   p_joint 9.266979e-04

Joint ci ratio: 6.219336e-02	ci left: 8.984912e-04	ci right 9.563930e-04	k: 3968	n:4280000
Cons ci ratio: 1.207087e-03	ci left: 7.108917e-01	ci right 7.117505e-01	k: 3044455	n:4280000
KS ci ratio: 1.289446e-01	ci left: 2.019657e-04	ci right 2.300262e-04	k: 923	n:4280000
C10orf71   4280000 perm   7938 sec   (539 perm/sec)   p_kst 2.156542e-04   p_cons 7.113213e-01   p_joint 9.271028e-04

Joint ci ratio: 6.221696e-02	ci left: 8.957083e-04	ci right 9.534535e-04	k: 3965	n:4290000
Cons ci ratio: 1.205624e-03	ci left: 7.109110e-01	ci right 7.117689e-01	k: 3051649	n:4290000
KS ci ratio: 1.288749e-01	ci left: 2.017205e-04	ci right 2.297306e-04	k: 924	n:4290000
C10orf71   4290000 perm   7971 sec   (538 perm/sec)   p_kst 2.153846e-04   p_cons 7.113401e-01   p_joint 9.242424e-04

Joint ci ratio: 6.215432e-02	ci left: 8.954568e-04	ci right 9.531256e-04	k: 3973	n:4300000
Cons ci ratio: 1.204244e-03	ci left: 7.109040e-01	ci right 7.117608e-01	k: 3058730	n:4300000
KS ci ratio: 1.286664e-01	ci left: 2.019266e-04	ci right 2.299165e-04	k: 927	n:4300000
C10orf71   4300000 perm   8006 sec   (537 perm/sec)   p_kst 2.155814e-04   p_cons 7.113326e-01   p_joint 9.239535e-04

Joint ci ratio: 6.206067e-02	ci left: 8.961202e-04	ci right 9.537416e-04	k: 3985	n:4310000
Cons ci ratio: 1.202818e-03	ci left: 7.109139e-01	ci right 7.117698e-01	k: 3065884	n:4310000
KS ci ratio: 1.285280e-01	ci left: 2.019072e-04	ci right 2.298620e-04	k: 929	n:4310000
C10orf71   4310000 perm   8040 sec   (536 perm/sec)   p_kst 2.155452e-04   p_cons 7.113420e-01   p_joint 9.245940e-04

Joint ci ratio: 6.218578e-02	ci left: 8.903996e-04	ci right 9.477727e-04	k: 3969	n:4320000
Cons ci ratio: 1.201421e-03	ci left: 7.109157e-01	ci right 7.117706e-01	k: 3073003	n:4320000
KS ci ratio: 1.284590e-01	ci left: 2.016638e-04	ci right 2.295688e-04	k: 930	n:4320000
C10orf71   4320000 perm   8075 sec   (535 perm/sec)   p_kst 2.152778e-04   p_cons 7.113433e-01   p_joint 9.187500e-04

Joint ci ratio: 6.212323e-02	ci left: 8.901621e-04	ci right 9.474602e-04	k: 3977	n:4330000
Cons ci ratio: 1.200055e-03	ci left: 7.109087e-01	ci right 7.117626e-01	k: 3080084	n:4330000
KS ci ratio: 1.282525e-01	ci left: 2.018687e-04	ci right 2.297537e-04	k: 933	n:4330000
C10orf71   4330000 perm   8110 sec   (534 perm/sec)   p_kst 2.154734e-04   p_cons 7.113358e-01   p_joint 9.184758e-04

Joint ci ratio: 6.221730e-02	ci left: 8.853890e-04	ci right 9.424692e-04	k: 3965	n:4340000
Cons ci ratio: 1.198644e-03	ci left: 7.109188e-01	ci right 7.117717e-01	k: 3087239	n:4340000
KS ci ratio: 1.281154e-01	ci left: 2.018496e-04	ci right 2.296999e-04	k: 935	n:4340000
C10orf71   4340000 perm   8145 sec   (533 perm/sec)   p_kst 2.154378e-04   p_cons 7.113454e-01   p_joint 9.135945e-04

Joint ci ratio: 6.217814e-02	ci left: 8.844851e-04	ci right 9.414699e-04	k: 3970	n:4350000
Cons ci ratio: 1.197308e-03	ci left: 7.109047e-01	ci right 7.117566e-01	k: 3094289	n:4350000
KS ci ratio: 1.279105e-01	ci left: 2.020531e-04	ci right 2.298836e-04	k: 938	n:4350000
C10orf71   4350000 perm   8180 sec   (532 perm/sec)   p_kst 2.156322e-04   p_cons 7.113308e-01   p_joint 9.126437e-04

Joint ci ratio: 6.211561e-02	ci left: 8.842628e-04	ci right 9.411740e-04	k: 3978	n:4360000
Cons ci ratio: 1.195912e-03	ci left: 7.109127e-01	ci right 7.117636e-01	k: 3101435	n:4360000
KS ci ratio: 1.278425e-01	ci left: 2.018117e-04	ci right 2.295931e-04	k: 939	n:4360000
C10orf71   4360000 perm   8215 sec   (531 perm/sec)   p_kst 2.153670e-04   p_cons 7.113383e-01   p_joint 9.123853e-04

Joint ci ratio: 6.220180e-02	ci left: 8.797613e-04	ci right 9.364640e-04	k: 3967	n:4370000
Cons ci ratio: 1.194473e-03	ci left: 7.109371e-01	ci right 7.117871e-01	k: 3108653	n:4370000
KS ci ratio: 1.277067e-01	ci left: 2.017930e-04	ci right 2.295400e-04	k: 941	n:4370000
C10orf71   4370000 perm   8250 sec   (530 perm/sec)   p_kst 2.153318e-04   p_cons 7.113622e-01   p_joint 9.077803e-04

Joint ci ratio: 6.217050e-02	ci left: 8.786517e-04	ci right 9.352534e-04	k: 3971	n:4380000
Cons ci ratio: 1.193099e-03	ci left: 7.109411e-01	ci right 7.117901e-01	k: 3115782	n:4380000
KS ci ratio: 1.277068e-01	ci left: 2.013322e-04	ci right 2.290159e-04	k: 941	n:4380000
C10orf71   4380000 perm   8285 sec   (529 perm/sec)   p_kst 2.148402e-04   p_cons 7.113658e-01   p_joint 9.066210e-04

Joint ci ratio: 6.211581e-02	ci left: 8.782200e-04	ci right 9.347423e-04	k: 3978	n:4390000
Cons ci ratio: 1.191755e-03	ci left: 7.109362e-01	ci right 7.117842e-01	k: 3122872	n:4390000
KS ci ratio: 1.275039e-01	ci left: 2.015352e-04	ci right 2.291994e-04	k: 944	n:4390000
C10orf71   4390000 perm   8321 sec   (528 perm/sec)   p_kst 2.150342e-04   p_cons 7.113604e-01   p_joint 9.061503e-04

Joint ci ratio: 6.209245e-02	ci left: 8.768952e-04	ci right 9.333104e-04	k: 3981	n:4400000
Cons ci ratio: 1.190415e-03	ci left: 7.109314e-01	ci right 7.117784e-01	k: 3129962	n:4400000
KS ci ratio: 1.273020e-01	ci left: 2.017372e-04	ci right 2.293820e-04	k: 947	n:4400000
C10orf71   4400000 perm   8356 sec   (527 perm/sec)   p_kst 2.152273e-04   p_cons 7.113550e-01   p_joint 9.047727e-04

Joint ci ratio: 6.192928e-02	ci left: 8.795949e-04	ci right 9.360297e-04	k: 4002	n:4410000
Cons ci ratio: 1.189093e-03	ci left: 7.109222e-01	ci right 7.117682e-01	k: 3137033	n:4410000
KS ci ratio: 1.268345e-01	ci left: 2.028166e-04	ci right 2.304996e-04	k: 954	n:4410000
C10orf71   4410000 perm   8391 sec   (526 perm/sec)   p_kst 2.163265e-04   p_cons 7.113454e-01   p_joint 9.074830e-04

Joint ci ratio: 6.749024e-02	ci left: 7.369258e-04	ci right 7.886187e-04	k: 3370	n:4420000
Cons ci ratio: 1.187798e-03	ci left: 7.109051e-01	ci right 7.117503e-01	k: 3144069	n:4420000
KS ci ratio: 1.253980e-01	ci left: 2.071782e-04	ci right 2.351124e-04	k: 976	n:4420000
C10orf71   4420000 perm   8427 sec   (524 perm/sec)   p_kst 2.208145e-04   p_cons 7.113278e-01   p_joint 7.624434e-04

Joint ci ratio: 6.742028e-02	ci left: 7.368158e-04	ci right 7.884453e-04	k: 3377	n:4430000
Cons ci ratio: 1.186469e-03	ci left: 7.109010e-01	ci right 7.117452e-01	k: 3151162	n:4430000
KS ci ratio: 1.251421e-01	ci left: 2.075851e-04	ci right 2.355129e-04	k: 980	n:4430000
C10orf71   4430000 perm   8463 sec   (523 perm/sec)   p_kst 2.212190e-04   p_cons 7.113233e-01   p_joint 7.623025e-04

Joint ci ratio: 6.739040e-02	ci left: 7.358206e-04	ci right 7.873566e-04	k: 3380	n:4440000
Cons ci ratio: 1.185128e-03	ci left: 7.109033e-01	ci right 7.117465e-01	k: 3158283	n:4440000
KS ci ratio: 1.250784e-01	ci left: 2.073358e-04	ci right 2.352147e-04	k: 981	n:4440000
C10orf71   4440000 perm   8499 sec   (522 perm/sec)   p_kst 2.209459e-04   p_cons 7.113250e-01   p_joint 7.612613e-04

Joint ci ratio: 6.728101e-02	ci left: 7.365974e-04	ci right 7.881008e-04	k: 3391	n:4450000
Cons ci ratio: 1.183823e-03	ci left: 7.108940e-01	ci right 7.117363e-01	k: 3165353	n:4450000
KS ci ratio: 1.248877e-01	ci left: 2.075229e-04	ci right 2.353814e-04	k: 984	n:4450000
C10orf71   4450000 perm   8535 sec   (521 perm/sec)   p_kst 2.211236e-04   p_cons 7.113153e-01   p_joint 7.620225e-04

Joint ci ratio: 6.720181e-02	ci left: 7.367094e-04	ci right 7.881576e-04	k: 3399	n:4460000
Cons ci ratio: 1.182499e-03	ci left: 7.108931e-01	ci right 7.117344e-01	k: 3172460	n:4460000
KS ci ratio: 1.246980e-01	ci left: 2.077093e-04	ci right 2.355472e-04	k: 987	n:4460000
C10orf71   4460000 perm   8571 sec   (520 perm/sec)   p_kst 2.213004e-04   p_cons 7.113139e-01   p_joint 7.621076e-04

Joint ci ratio: 6.713274e-02	ci left: 7.366009e-04	ci right 7.879867e-04	k: 3406	n:4470000
Cons ci ratio: 1.181167e-03	ci left: 7.108967e-01	ci right 7.117371e-01	k: 3179587	n:4470000
KS ci ratio: 1.245091e-01	ci left: 2.078948e-04	ci right 2.357123e-04	k: 990	n:4470000
C10orf71   4470000 perm   8607 sec   (519 perm/sec)   p_kst 2.214765e-04   p_cons 7.113170e-01   p_joint 7.619687e-04

Joint ci ratio: 6.726134e-02	ci left: 7.321036e-04	ci right 7.832773e-04	k: 3393	n:4480000
Cons ci ratio: 1.179874e-03	ci left: 7.108882e-01	ci right 7.117276e-01	k: 3186660	n:4480000
KS ci ratio: 1.243210e-01	ci left: 2.080796e-04	ci right 2.358767e-04	k: 993	n:4480000
C10orf71   4480000 perm   8643 sec   (518 perm/sec)   p_kst 2.216518e-04   p_cons 7.113080e-01   p_joint 7.573661e-04

Joint ci ratio: 6.719209e-02	ci left: 7.320059e-04	ci right 7.831180e-04	k: 3400	n:4490000
Cons ci ratio: 1.178571e-03	ci left: 7.108846e-01	ci right 7.117231e-01	k: 3193755	n:4490000
KS ci ratio: 1.241962e-01	ci left: 2.080478e-04	ci right 2.358106e-04	k: 995	n:4490000
C10orf71   4490000 perm   8679 sec   (517 perm/sec)   p_kst 2.216036e-04   p_cons 7.113040e-01   p_joint 7.572383e-04

Joint ci ratio: 6.710335e-02	ci left: 7.323457e-04	ci right 7.834114e-04	k: 3409	n:4500000
Cons ci ratio: 1.177272e-03	ci left: 7.108811e-01	ci right 7.117187e-01	k: 3200850	n:4500000
KS ci ratio: 1.239475e-01	ci left: 2.084467e-04	ci right 2.362030e-04	k: 999	n:4500000
C10orf71   4500000 perm   8715 sec   (516 perm/sec)   p_kst 2.220000e-04   p_cons 7.113000e-01   p_joint 7.575556e-04

Joint ci ratio: 6.707389e-02	ci left: 7.313759e-04	ci right 7.823507e-04	k: 3412	n:4510000
Cons ci ratio: 1.175999e-03	ci left: 7.108700e-01	ci right 7.117067e-01	k: 3207911	n:4510000
KS ci ratio: 1.238856e-01	ci left: 2.081994e-04	ci right 2.359079e-04	k: 1000	n:4510000
C10orf71   4510000 perm   8751 sec   (515 perm/sec)   p_kst 2.217295e-04   p_cons 7.112885e-01   p_joint 7.565410e-04

Joint ci ratio: 6.700521e-02	ci left: 7.312805e-04	ci right 7.821944e-04	k: 3419	n:4520000
Cons ci ratio: 1.174716e-03	ci left: 7.108638e-01	ci right 7.116996e-01	k: 3214994	n:4520000
KS ci ratio: 1.237003e-01	ci left: 2.083819e-04	ci right 2.360702e-04	k: 1003	n:4520000
C10orf71   4520000 perm   8788 sec   (514 perm/sec)   p_kst 2.219027e-04   p_cons 7.112819e-01   p_joint 7.564159e-04

Joint ci ratio: 6.465460e-02	ci left: 7.845978e-04	ci right 8.372357e-04	k: 3672	n:4530000
Cons ci ratio: 1.173446e-03	ci left: 7.108548e-01	ci right 7.116897e-01	k: 3222064	n:4530000
KS ci ratio: 1.234546e-01	ci left: 2.087776e-04	ci right 2.364594e-04	k: 1007	n:4530000
C10orf71   4530000 perm   8824 sec   (513 perm/sec)   p_kst 2.222958e-04   p_cons 7.112724e-01   p_joint 8.105960e-04

Joint ci ratio: 6.460187e-02	ci left: 7.841698e-04	ci right 8.367346e-04	k: 3678	n:4540000
Cons ci ratio: 1.172150e-03	ci left: 7.108565e-01	ci right 7.116904e-01	k: 3229182	n:4540000
KS ci ratio: 1.233324e-01	ci left: 2.087447e-04	ci right 2.363927e-04	k: 1009	n:4540000
C10orf71   4540000 perm   8860 sec   (512 perm/sec)   p_kst 2.222467e-04   p_cons 7.112736e-01   p_joint 8.101322e-04

Joint ci ratio: 6.454927e-02	ci left: 7.837437e-04	ci right 8.362356e-04	k: 3684	n:4550000
Cons ci ratio: 1.170820e-03	ci left: 7.108713e-01	ci right 7.117043e-01	k: 3236360	n:4550000
KS ci ratio: 1.232714e-01	ci left: 2.084989e-04	ci right 2.360997e-04	k: 1010	n:4550000
C10orf71   4550000 perm   8897 sec   (511 perm/sec)   p_kst 2.219780e-04   p_cons 7.112879e-01   p_joint 8.096703e-04

Joint ci ratio: 6.447058e-02	ci left: 7.839668e-04	ci right 8.364072e-04	k: 3693	n:4560000
Cons ci ratio: 1.169566e-03	ci left: 7.108610e-01	ci right 7.116931e-01	k: 3243424	n:4560000
KS ci ratio: 1.231496e-01	ci left: 2.084668e-04	ci right 2.360340e-04	k: 1012	n:4560000
C10orf71   4560000 perm   8934 sec   (510 perm/sec)   p_kst 2.219298e-04   p_cons 7.112772e-01   p_joint 8.098684e-04

Joint ci ratio: 6.436609e-02	ci left: 7.848349e-04	ci right 8.372451e-04	k: 3705	n:4570000
Cons ci ratio: 1.168324e-03	ci left: 7.108479e-01	ci right 7.116791e-01	k: 3250475	n:4570000
KS ci ratio: 1.230282e-01	ci left: 2.084348e-04	ci right 2.359686e-04	k: 1014	n:4570000
C10orf71   4570000 perm   8971 sec   (509 perm/sec)   p_kst 2.218818e-04   p_cons 7.112637e-01   p_joint 8.107221e-04

Joint ci ratio: 6.469015e-02	ci left: 7.751729e-04	ci right 8.272083e-04	k: 3668	n:4580000
Cons ci ratio: 1.167051e-03	ci left: 7.108472e-01	ci right 7.116775e-01	k: 3257582	n:4580000
KS ci ratio: 1.227865e-01	ci left: 2.088262e-04	ci right 2.363536e-04	k: 1018	n:4580000
C10orf71   4580000 perm   9008 sec   (508 perm/sec)   p_kst 2.222707e-04   p_cons 7.112624e-01   p_joint 8.008734e-04

Joint ci ratio: 6.461974e-02	ci left: 7.751988e-04	ci right 8.271772e-04	k: 3676	n:4590000
Cons ci ratio: 1.165788e-03	ci left: 7.108444e-01	ci right 7.116738e-01	k: 3264680	n:4590000
KS ci ratio: 1.226662e-01	ci left: 2.087936e-04	ci right 2.362878e-04	k: 1020	n:4590000
C10orf71   4590000 perm   9044 sec   (508 perm/sec)   p_kst 2.222222e-04   p_cons 7.112593e-01   p_joint 8.008715e-04

Joint ci ratio: 6.452327e-02	ci left: 7.758663e-04	ci right 8.278088e-04	k: 3687	n:4600000
Cons ci ratio: 1.164499e-03	ci left: 7.108524e-01	ci right 7.116808e-01	k: 3271827	n:4600000
KS ci ratio: 1.225462e-01	ci left: 2.087611e-04	ci right 2.362222e-04	k: 1022	n:4600000
C10orf71   4600000 perm   9081 sec   (507 perm/sec)   p_kst 2.221739e-04   p_cons 7.112667e-01   p_joint 8.015217e-04

Joint ci ratio: 6.444468e-02	ci left: 7.761041e-04	ci right 8.279969e-04	k: 3696	n:4610000
Cons ci ratio: 1.163271e-03	ci left: 7.108403e-01	ci right 7.116679e-01	k: 3278882	n:4610000
KS ci ratio: 1.223669e-01	ci left: 2.089391e-04	ci right 2.363805e-04	k: 1025	n:4610000
C10orf71   4610000 perm   9119 sec   (506 perm/sec)   p_kst 2.223427e-04   p_cons 7.112542e-01   p_joint 8.017354e-04

Joint ci ratio: 6.439246e-02	ci left: 7.757020e-04	ci right 8.275243e-04	k: 3702	n:4620000
Cons ci ratio: 1.162008e-03	ci left: 7.108419e-01	ci right 7.116686e-01	k: 3286000	n:4620000
KS ci ratio: 1.223073e-01	ci left: 2.086967e-04	ci right 2.360919e-04	k: 1026	n:4620000
C10orf71   4620000 perm   9156 sec   (505 perm/sec)   p_kst 2.220779e-04   p_cons 7.112554e-01   p_joint 8.012987e-04

Joint ci ratio: 6.449719e-02	ci left: 7.714765e-04	ci right 8.231035e-04	k: 3690	n:4630000
Cons ci ratio: 1.160780e-03	ci left: 7.108325e-01	ci right 7.116583e-01	k: 3293067	n:4630000
KS ci ratio: 1.222479e-01	ci left: 2.084553e-04	ci right 2.358046e-04	k: 1027	n:4630000
C10orf71   4630000 perm   9194 sec   (504 perm/sec)   p_kst 2.218143e-04   p_cons 7.112456e-01   p_joint 7.969762e-04

Joint ci ratio: 6.445357e-02	ci left: 7.708741e-04	ci right 8.224246e-04	k: 3695	n:4640000
Cons ci ratio: 1.159530e-03	ci left: 7.108327e-01	ci right 7.116576e-01	k: 3300178	n:4640000
KS ci ratio: 1.222479e-01	ci left: 2.080061e-04	ci right 2.352964e-04	k: 1027	n:4640000
C10orf71   4640000 perm   9231 sec   (503 perm/sec)   p_kst 2.213362e-04   p_cons 7.112453e-01   p_joint 7.963362e-04

Joint ci ratio: 6.438393e-02	ci left: 7.709090e-04	ci right 8.224040e-04	k: 3703	n:4650000
Cons ci ratio: 1.158324e-03	ci left: 7.108184e-01	ci right 7.116424e-01	k: 3307222	n:4650000
KS ci ratio: 1.221885e-01	ci left: 2.077672e-04	ci right 2.350120e-04	k: 1028	n:4650000
C10orf71   4650000 perm   9268 sec   (502 perm/sec)   p_kst 2.210753e-04   p_cons 7.112305e-01   p_joint 7.963441e-04

Joint ci ratio: 6.441881e-02	ci left: 7.684101e-04	ci right 8.197671e-04	k: 3699	n:4660000
Cons ci ratio: 1.157080e-03	ci left: 7.108188e-01	ci right 7.116419e-01	k: 3314334	n:4660000
KS ci ratio: 1.220699e-01	ci left: 2.077374e-04	ci right 2.349500e-04	k: 1030	n:4660000
C10orf71   4660000 perm   9306 sec   (501 perm/sec)   p_kst 2.210300e-04   p_cons 7.112305e-01   p_joint 7.937768e-04

Joint ci ratio: 6.436665e-02	ci left: 7.680288e-04	ci right 8.193172e-04	k: 3705	n:4670000
Cons ci ratio: 1.155859e-03	ci left: 7.108127e-01	ci right 7.116350e-01	k: 3321416	n:4670000
KS ci ratio: 1.220699e-01	ci left: 2.072926e-04	ci right 2.344469e-04	k: 1030	n:4670000
C10orf71   4670000 perm   9344 sec   (500 perm/sec)   p_kst 2.205567e-04   p_cons 7.112240e-01   p_joint 7.933619e-04

Joint ci ratio: 6.183820e-02	ci left: 8.313728e-04	ci right 8.846324e-04	k: 4014	n:4680000
Cons ci ratio: 1.154665e-03	ci left: 7.107984e-01	ci right 7.116198e-01	k: 3328459	n:4680000
KS ci ratio: 1.219517e-01	ci left: 2.072640e-04	ci right 2.343863e-04	k: 1032	n:4680000
C10orf71   4680000 perm   9382 sec   (499 perm/sec)   p_kst 2.205128e-04   p_cons 7.112092e-01   p_joint 8.576923e-04

Joint ci ratio: 6.190001e-02	ci left: 8.279208e-04	ci right 8.810141e-04	k: 4006	n:4690000
Cons ci ratio: 1.153425e-03	ci left: 7.108020e-01	ci right 7.116225e-01	k: 3335586	n:4690000
KS ci ratio: 1.219517e-01	ci left: 2.068220e-04	ci right 2.338866e-04	k: 1032	n:4690000
C10orf71   4690000 perm   9420 sec   (498 perm/sec)   p_kst 2.200426e-04   p_cons 7.112124e-01   p_joint 8.541578e-04

Joint ci ratio: 6.186917e-02	ci left: 8.269971e-04	ci right 8.800039e-04	k: 4010	n:4700000
Cons ci ratio: 1.152187e-03	ci left: 7.108060e-01	ci right 7.116257e-01	k: 3342715	n:4700000
KS ci ratio: 1.218339e-01	ci left: 2.067946e-04	ci right 2.338274e-04	k: 1034	n:4700000
C10orf71   4700000 perm   9458 sec   (497 perm/sec)   p_kst 2.200000e-04   p_cons 7.112160e-01   p_joint 8.531915e-04

Joint ci ratio: 6.180757e-02	ci left: 8.269135e-04	ci right 8.798603e-04	k: 4018	n:4710000
Cons ci ratio: 1.150975e-03	ci left: 7.108024e-01	ci right 7.116212e-01	k: 3349808	n:4710000
KS ci ratio: 1.215991e-01	ci left: 2.071789e-04	ci right 2.342061e-04	k: 1038	n:4710000
C10orf71   4710000 perm   9496 sec   (496 perm/sec)   p_kst 2.203822e-04   p_cons 7.112119e-01   p_joint 8.530786e-04

Joint ci ratio: 6.174615e-02	ci left: 8.268303e-04	ci right 8.797173e-04	k: 4026	n:4720000
Cons ci ratio: 1.149754e-03	ci left: 7.108032e-01	ci right 7.116211e-01	k: 3356922	n:4720000
KS ci ratio: 1.214822e-01	ci left: 2.071508e-04	ci right 2.341465e-04	k: 1040	n:4720000
C10orf71   4720000 perm   9535 sec   (495 perm/sec)   p_kst 2.203390e-04   p_cons 7.112123e-01   p_joint 8.529661e-04

Joint ci ratio: 6.164669e-02	ci left: 8.277883e-04	ci right 8.806482e-04	k: 4039	n:4730000
Cons ci ratio: 1.148571e-03	ci left: 7.107916e-01	ci right 7.116086e-01	k: 3363977	n:4730000
KS ci ratio: 1.211915e-01	ci left: 2.077379e-04	ci right 2.347406e-04	k: 1045	n:4730000
C10orf71   4730000 perm   9573 sec   (494 perm/sec)   p_kst 2.209302e-04   p_cons 7.112002e-01   p_joint 8.539112e-04

Joint ci ratio: 6.159337e-02	ci left: 8.274960e-04	ci right 8.802898e-04	k: 4046	n:4740000
Cons ci ratio: 1.147369e-03	ci left: 7.107884e-01	ci right 7.116046e-01	k: 3371072	n:4740000
KS ci ratio: 1.210758e-01	ci left: 2.077088e-04	ci right 2.346801e-04	k: 1047	n:4740000
C10orf71   4740000 perm   9612 sec   (493 perm/sec)   p_kst 2.208861e-04   p_cons 7.111966e-01   p_joint 8.535865e-04

Joint ci ratio: 6.173864e-02	ci left: 8.218155e-04	ci right 8.743750e-04	k: 4027	n:4750000
Cons ci ratio: 1.146195e-03	ci left: 7.107766e-01	ci right 7.115920e-01	k: 3378126	n:4750000
KS ci ratio: 1.209029e-01	ci left: 2.078839e-04	ci right 2.348367e-04	k: 1050	n:4750000
C10orf71   4750000 perm   9650 sec   (492 perm/sec)   p_kst 2.210526e-04   p_cons 7.111844e-01   p_joint 8.477895e-04

Joint ci ratio: 6.166978e-02	ci left: 8.219506e-04	ci right 8.744580e-04	k: 4036	n:4760000
Cons ci ratio: 1.144982e-03	ci left: 7.107800e-01	ci right 7.115945e-01	k: 3385252	n:4760000
KS ci ratio: 1.207307e-01	ci left: 2.080584e-04	ci right 2.349927e-04	k: 1053	n:4760000
C10orf71   4760000 perm   9689 sec   (491 perm/sec)   p_kst 2.212185e-04   p_cons 7.111874e-01   p_joint 8.478992e-04

Joint ci ratio: 6.163928e-02	ci left: 8.210530e-04	ci right 8.734763e-04	k: 4040	n:4770000
Cons ci ratio: 1.143736e-03	ci left: 7.107966e-01	ci right 7.116102e-01	k: 3392441	n:4770000
KS ci ratio: 1.207307e-01	ci left: 2.076222e-04	ci right 2.345000e-04	k: 1053	n:4770000
C10orf71   4770000 perm   9727 sec   (490 perm/sec)   p_kst 2.207547e-04   p_cons 7.112036e-01   p_joint 8.469602e-04

Joint ci ratio: 6.173114e-02	ci left: 8.168635e-04	ci right 8.690998e-04	k: 4028	n:4780000
Cons ci ratio: 1.142558e-03	ci left: 7.107901e-01	ci right 7.116029e-01	k: 3399520	n:4780000
KS ci ratio: 1.205592e-01	ci left: 2.077965e-04	ci right 2.346560e-04	k: 1056	n:4780000
C10orf71   4780000 perm   9765 sec   (489 perm/sec)   p_kst 2.209205e-04   p_cons 7.111967e-01   p_joint 8.426778e-04

Joint ci ratio: 6.163939e-02	ci left: 8.176248e-04	ci right 8.698292e-04	k: 4040	n:4790000
Cons ci ratio: 1.141383e-03	ci left: 7.107839e-01	ci right 7.115958e-01	k: 3406600	n:4790000
KS ci ratio: 1.203885e-01	ci left: 2.079702e-04	ci right 2.348113e-04	k: 1059	n:4790000
C10orf71   4790000 perm   9804 sec   (489 perm/sec)   p_kst 2.210856e-04   p_cons 7.111900e-01   p_joint 8.434238e-04

Joint ci ratio: 6.156325e-02	ci left: 8.179726e-04	ci right 8.701325e-04	k: 4050	n:4800000
Cons ci ratio: 1.140144e-03	ci left: 7.108023e-01	ci right 7.116133e-01	k: 3413798	n:4800000
KS ci ratio: 1.202751e-01	ci left: 2.079410e-04	ci right 2.347513e-04	k: 1061	n:4800000
C10orf71   4800000 perm   9843 sec   (488 perm/sec)   p_kst 2.210417e-04   p_cons 7.112079e-01   p_joint 8.437500e-04

Joint ci ratio: 6.185434e-02	ci left: 8.084936e-04	ci right 8.603015e-04	k: 4012	n:4810000
Cons ci ratio: 1.138953e-03	ci left: 7.108047e-01	ci right 7.116150e-01	k: 3420920	n:4810000
KS ci ratio: 1.201620e-01	ci left: 2.079120e-04	ci right 2.346915e-04	k: 1063	n:4810000
C10orf71   4810000 perm   9882 sec   (487 perm/sec)   p_kst 2.209979e-04   p_cons 7.112100e-01   p_joint 8.340956e-04

Joint ci ratio: 6.177741e-02	ci left: 8.088589e-04	ci right 8.606234e-04	k: 4022	n:4820000
Cons ci ratio: 1.137801e-03	ci left: 7.107941e-01	ci right 7.116035e-01	k: 3427979	n:4820000
KS ci ratio: 1.199930e-01	ci left: 2.080844e-04	ci right 2.348457e-04	k: 1066	n:4820000
C10orf71   4820000 perm   9921 sec   (486 perm/sec)   p_kst 2.211618e-04   p_cons 7.111990e-01   p_joint 8.344398e-04

Joint ci ratio: 6.194722e-02	ci left: 8.026998e-04	ci right 8.542164e-04	k: 4000	n:4830000
Cons ci ratio: 1.136618e-03	ci left: 7.107962e-01	ci right 7.116048e-01	k: 3435099	n:4830000
KS ci ratio: 1.197128e-01	ci left: 2.086577e-04	ci right 2.354257e-04	k: 1071	n:4830000
C10orf71   4830000 perm   9960 sec   (485 perm/sec)   p_kst 2.217391e-04   p_cons 7.112006e-01   p_joint 8.281573e-04

Joint ci ratio: 6.186994e-02	ci left: 8.030754e-04	ci right 8.545496e-04	k: 4010	n:4840000
Cons ci ratio: 1.135495e-03	ci left: 7.107780e-01	ci right 7.115858e-01	k: 3442121	n:4840000
KS ci ratio: 1.196012e-01	ci left: 2.086275e-04	ci right 2.353649e-04	k: 1073	n:4840000
C10orf71   4840000 perm   9999 sec   (484 perm/sec)   p_kst 2.216942e-04   p_cons 7.111820e-01   p_joint 8.285124e-04

Joint ci ratio: 6.179294e-02	ci left: 8.034496e-04	ci right 8.548813e-04	k: 4020	n:4850000
Cons ci ratio: 1.134328e-03	ci left: 7.107768e-01	ci right 7.115837e-01	k: 3449225	n:4850000
KS ci ratio: 1.194900e-01	ci left: 2.085973e-04	ci right 2.353043e-04	k: 1075	n:4850000
C10orf71   4850000 perm   10037 sec   (483 perm/sec)   p_kst 2.216495e-04   p_cons 7.111804e-01   p_joint 8.288660e-04

Joint ci ratio: 6.174691e-02	ci left: 8.030119e-04	ci right 8.543759e-04	k: 4026	n:4860000
Cons ci ratio: 1.133166e-03	ci left: 7.107752e-01	ci right 7.115813e-01	k: 3456327	n:4860000
KS ci ratio: 1.193791e-01	ci left: 2.085674e-04	ci right 2.352439e-04	k: 1077	n:4860000
C10orf71   4860000 perm   10077 sec   (482 perm/sec)   p_kst 2.216049e-04   p_cons 7.111784e-01   p_joint 8.283951e-04

Joint ci ratio: 6.166273e-02	ci left: 8.035869e-04	ci right 8.549151e-04	k: 4037	n:4870000
Cons ci ratio: 1.131971e-03	ci left: 7.107870e-01	ci right 7.115922e-01	k: 3463494	n:4870000
KS ci ratio: 1.191032e-01	ci left: 2.091352e-04	ci right 2.358182e-04	k: 1082	n:4870000
C10orf71   4870000 perm   10116 sec   (481 perm/sec)   p_kst 2.221766e-04   p_cons 7.111897e-01   p_joint 8.289528e-04

Joint ci ratio: 6.183159e-02	ci left: 7.975015e-04	ci right 8.485856e-04	k: 4015	n:4880000
Cons ci ratio: 1.130817e-03	ci left: 7.107848e-01	ci right 7.115892e-01	k: 3470593	n:4880000
KS ci ratio: 1.187746e-01	ci left: 2.098995e-04	ci right 2.366010e-04	k: 1088	n:4880000
C10orf71   4880000 perm   10155 sec   (481 perm/sec)   p_kst 2.229508e-04   p_cons 7.111871e-01   p_joint 8.227459e-04

Joint ci ratio: 6.211869e-02	ci left: 7.884213e-04	ci right 8.391666e-04	k: 3978	n:4890000
Cons ci ratio: 1.129712e-03	ci left: 7.107664e-01	ci right 7.115700e-01	k: 3477613	n:4890000
KS ci ratio: 1.185028e-01	ci left: 2.104625e-04	ci right 2.371700e-04	k: 1093	n:4890000
C10orf71   4890000 perm   10195 sec   (480 perm/sec)   p_kst 2.235174e-04   p_cons 7.111683e-01   p_joint 8.134969e-04

Joint ci ratio: 6.207192e-02	ci left: 7.880178e-04	ci right 8.386976e-04	k: 3984	n:4900000
Cons ci ratio: 1.128557e-03	ci left: 7.107675e-01	ci right 7.115702e-01	k: 3484728	n:4900000
KS ci ratio: 1.184487e-01	ci left: 2.102310e-04	ci right 2.368961e-04	k: 1094	n:4900000
C10orf71   4900000 perm   10234 sec   (479 perm/sec)   p_kst 2.232653e-04   p_cons 7.111690e-01   p_joint 8.130612e-04

Joint ci ratio: 6.201748e-02	ci left: 7.878164e-04	ci right 8.384372e-04	k: 3991	n:4910000
Cons ci ratio: 1.127401e-03	ci left: 7.107702e-01	ci right 7.115721e-01	k: 3491851	n:4910000
KS ci ratio: 1.183407e-01	ci left: 2.101981e-04	ci right 2.368330e-04	k: 1096	n:4910000
C10orf71   4910000 perm   10274 sec   (478 perm/sec)   p_kst 2.232179e-04   p_cons 7.111713e-01   p_joint 8.128310e-04

Joint ci ratio: 6.206423e-02	ci left: 7.850145e-04	ci right 8.354947e-04	k: 3985	n:4920000
Cons ci ratio: 1.126278e-03	ci left: 7.107621e-01	ci right 7.115633e-01	k: 3498921	n:4920000
KS ci ratio: 1.182868e-01	ci left: 2.099681e-04	ci right 2.365609e-04	k: 1097	n:4920000
C10orf71   4920000 perm   10314 sec   (477 perm/sec)   p_kst 2.229675e-04   p_cons 7.111628e-01   p_joint 8.099593e-04

Joint ci ratio: 6.214234e-02	ci left: 7.814252e-04	ci right 8.317401e-04	k: 3975	n:4930000
Cons ci ratio: 1.125129e-03	ci left: 7.107648e-01	ci right 7.115652e-01	k: 3506044	n:4930000
KS ci ratio: 1.181256e-01	ci left: 2.101327e-04	ci right 2.367075e-04	k: 1100	n:4930000
C10orf71   4930000 perm   10353 sec   (476 perm/sec)   p_kst 2.231237e-04   p_cons 7.111651e-01   p_joint 8.062880e-04

Joint ci ratio: 6.209552e-02	ci left: 7.810391e-04	ci right 8.312899e-04	k: 3981	n:4940000
Cons ci ratio: 1.123963e-03	ci left: 7.107748e-01	ci right 7.115743e-01	k: 3513203	n:4940000
KS ci ratio: 1.180720e-01	ci left: 2.099038e-04	ci right 2.364368e-04	k: 1101	n:4940000
C10orf71   4940000 perm   10393 sec   (475 perm/sec)   p_kst 2.228745e-04   p_cons 7.111747e-01   p_joint 8.058704e-04

Joint ci ratio: 6.204881e-02	ci left: 7.806545e-04	ci right 8.308414e-04	k: 3987	n:4950000
Cons ci ratio: 1.122857e-03	ci left: 7.107642e-01	ci right 7.115629e-01	k: 3520260	n:4950000
KS ci ratio: 1.179650e-01	ci left: 2.098719e-04	ci right 2.363751e-04	k: 1103	n:4950000
C10orf71   4950000 perm   10433 sec   (474 perm/sec)   p_kst 2.228283e-04   p_cons 7.111636e-01   p_joint 8.054545e-04

Joint ci ratio: 6.196339e-02	ci left: 7.812640e-04	ci right 8.314185e-04	k: 3998	n:4960000
Cons ci ratio: 1.121778e-03	ci left: 7.107453e-01	ci right 7.115432e-01	k: 3527276	n:4960000
KS ci ratio: 1.179116e-01	ci left: 2.096444e-04	ci right 2.361061e-04	k: 1104	n:4960000
C10orf71   4960000 perm   10473 sec   (474 perm/sec)   p_kst 2.225806e-04   p_cons 7.111444e-01   p_joint 8.060484e-04

Joint ci ratio: 6.187833e-02	ci left: 7.818711e-04	ci right 8.319931e-04	k: 4009	n:4970000
Cons ci ratio: 1.120646e-03	ci left: 7.107466e-01	ci right 7.115437e-01	k: 3534392	n:4970000
KS ci ratio: 1.177518e-01	ci left: 2.098084e-04	ci right 2.362524e-04	k: 1107	n:4970000
C10orf71   4970000 perm   10513 sec   (473 perm/sec)   p_kst 2.227364e-04   p_cons 7.111453e-01   p_joint 8.066398e-04

Joint ci ratio: 6.179361e-02	ci left: 7.824757e-04	ci right 8.325654e-04	k: 4020	n:4980000
Cons ci ratio: 1.119504e-03	ci left: 7.107529e-01	ci right 7.115492e-01	k: 3541533	n:4980000
KS ci ratio: 1.174870e-01	ci left: 2.103616e-04	ci right 2.368116e-04	k: 1112	n:4980000
C10orf71   4980000 perm   10554 sec   (472 perm/sec)   p_kst 2.232932e-04   p_cons 7.111512e-01   p_joint 8.072289e-04

Joint ci ratio: 6.173223e-02	ci left: 7.824861e-04	ci right 8.325249e-04	k: 4028	n:4990000
Cons ci ratio: 1.118370e-03	ci left: 7.107576e-01	ci right 7.115531e-01	k: 3548666	n:4990000
KS ci ratio: 1.173290e-01	ci left: 2.105236e-04	ci right 2.369558e-04	k: 1115	n:4990000
C10orf71   4990000 perm   10593 sec   (471 perm/sec)   p_kst 2.234469e-04   p_cons 7.111555e-01   p_joint 8.072144e-04

Joint ci ratio: 6.166339e-02	ci left: 7.826934e-04	ci right 8.326876e-04	k: 4037	n:5000000
Cons ci ratio: 1.117212e-03	ci left: 7.107723e-01	ci right 7.115670e-01	k: 3555849	n:5000000
KS ci ratio: 1.172240e-01	ci left: 2.104908e-04	ci right 2.368937e-04	k: 1117	n:5000000
C10orf71   5000000 perm   10634 sec   (470 perm/sec)   p_kst 2.234000e-04   p_cons 7.111698e-01   p_joint 8.074000e-04

Outputting figure to mutsig2_images.part000000000018/C10orf71.11_4402_5000000_0.0002234_0.71117_0.0008074.png
                gene_name: C10orf71
               theta_stop: 0.12 
                    nperm: 5000000 
                     p_ks: 0.00022 
        ci_ks_bounds_left: 0.00021 
       ci_ks_bounds_right: 0.00024 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.00081 
     ci_joint_bounds_left: 0.00078 
    ci_joint_bounds_right: 0.00083 

Current progress: 6 percent done.
C10orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
Cons ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
C10orf79   10000 perm   2 sec   (4363 perm/sec)   p_kst 2.918000e-01   p_cons 7.650000e-02   p_joint 1.646000e-01

Joint ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
Cons ci ratio: 9.599980e-02	ci left: 7.324420e-02	ci right 8.067935e-02	k: 1538	n:20000
KS ci ratio: 4.397906e-02	ci left: 2.780055e-01	ci right 2.905573e-01	k: 5685	n:20000
C10orf79   20000 perm   5 sec   (3974 perm/sec)   p_kst 2.842500e-01   p_cons 7.690000e-02   p_joint 6.540000e-02

Joint ci ratio: 6.218385e-02	ci left: 1.133176e-01	ci right 1.206234e-01	k: 3508	n:30000
Cons ci ratio: 7.652319e-02	ci left: 7.734716e-02	ci right 8.353438e-02	k: 2412	n:30000
KS ci ratio: 3.583542e-02	ci left: 2.799957e-01	ci right 2.902460e-01	k: 8553	n:30000
C10orf79   30000 perm   8 sec   (3753 perm/sec)   p_kst 2.851000e-01   p_cons 8.040000e-02   p_joint 1.169333e-01

Outputting figure to mutsig2_images.part000000000018/C10orf79.11_5150_30000_0.2851_0.0804_0.11693.png
                gene_name: C10orf79
               theta_stop: 0.077 
                    nperm: 30000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
C10orf90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
Cons ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
KS ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
C10orf90   10000 perm   2 sec   (5218 perm/sec)   p_kst 1.886000e-01   p_cons 4.503000e-01   p_joint 2.325000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf90.10_2136_10000_0.1886_0.4503_0.2325.png
                gene_name: C10orf90
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 10 percent done.
BTRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
Cons ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
KS ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
BTRC   10000 perm   2 sec   (5338 perm/sec)   p_kst 5.003000e-01   p_cons 1.851000e-01   p_joint 3.595000e-01

Outputting figure to mutsig2_images.part000000000018/BTRC.9_1874_10000_0.5003_0.1851_0.3595.png
                gene_name: BTRC
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 12 percent done.
BUD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
Cons ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
KS ci ratio: 1.006058e-01	ci left: 1.251301e-01	ci right 1.384852e-01	k: 1317	n:10000
BUD13   10000 perm   2 sec   (4910 perm/sec)   p_kst 1.317000e-01   p_cons 3.150000e-01   p_joint 1.332000e-01

Joint ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
Cons ci ratio: 4.085156e-02	ci left: 3.087634e-01	ci right 3.216904e-01	k: 6304	n:20000
KS ci ratio: 7.488375e-02	ci left: 1.159695e-01	ci right 1.250412e-01	k: 2409	n:20000
BUD13   20000 perm   4 sec   (4480 perm/sec)   p_kst 1.204500e-01   p_cons 3.152000e-01   p_joint 1.179000e-01

Outputting figure to mutsig2_images.part000000000018/BUD13.9_1900_20000_0.12045_0.3152_0.1179.png
                gene_name: BUD13
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
C10orf12
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
Cons ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
KS ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
C10orf12   10000 perm   2 sec   (4821 perm/sec)   p_kst 8.714000e-01   p_cons 5.064000e-01   p_joint 9.416000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf12.8_3748_10000_0.8714_0.5064_0.9416.png
                gene_name: C10orf12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 16 percent done.
C10orf137
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
Cons ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
KS ci ratio: 2.534987e-02	ci left: 6.960538e-01	ci right 7.140266e-01	k: 7051	n:10000
C10orf137   10000 perm   2 sec   (4389 perm/sec)   p_kst 7.051000e-01   p_cons 7.266000e-01   p_joint 7.724000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf137.9_3711_10000_0.7051_0.7266_0.7724.png
                gene_name: C10orf137
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 18 percent done.
BUB1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
Cons ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
BUB1B   10000 perm   2 sec   (5141 perm/sec)   p_kst 3.670000e-01   p_cons 4.904000e-01   p_joint 5.204000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1B.8_3245_10000_0.367_0.4904_0.5204.png
                gene_name: BUB1B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 20 percent done.
C10orf140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
Cons ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
KS ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
C10orf140   10000 perm   2 sec   (5129 perm/sec)   p_kst 4.955000e-01   p_cons 4.060000e-02   p_joint 1.130000e-01

Joint ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
Cons ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
KS ci ratio: 2.744074e-02	ci left: 4.980455e-01	ci right 5.119530e-01	k: 10100	n:20000
C10orf140   20000 perm   4 sec   (4638 perm/sec)   p_kst 5.050000e-01   p_cons 4.060000e-02   p_joint 9.045000e-02

Joint ci ratio: 7.921421e-02	ci left: 7.246949e-02	ci right 7.847970e-02	k: 2263	n:30000
Cons ci ratio: 1.079538e-01	ci left: 3.982288e-02	ci right 4.439966e-02	k: 1262	n:30000
KS ci ratio: 2.237895e-02	ci left: 4.999254e-01	ci right 5.112735e-01	k: 15168	n:30000
C10orf140   30000 perm   7 sec   (4455 perm/sec)   p_kst 5.056000e-01   p_cons 4.206667e-02   p_joint 7.543333e-02

Joint ci ratio: 6.336369e-02	ci left: 8.455129e-02	ci right 9.010879e-02	k: 3492	n:40000
Cons ci ratio: 9.311649e-02	ci left: 4.044612e-02	ci right 4.442065e-02	k: 1696	n:40000
KS ci ratio: 1.999923e-02	ci left: 4.849895e-01	ci right 4.948120e-01	k: 19596	n:40000
C10orf140   40000 perm   9 sec   (4329 perm/sec)   p_kst 4.899000e-01   p_cons 4.240000e-02   p_joint 8.730000e-02

Outputting figure to mutsig2_images.part000000000018/C10orf140.8_2731_40000_0.4899_0.0424_0.0873.png
                gene_name: C10orf140
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 22 percent done.
C11orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
Cons ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
KS ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
C11orf30   10000 perm   2 sec   (4643 perm/sec)   p_kst 5.299000e-01   p_cons 9.594000e-01   p_joint 8.124000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf30.8_4049_10000_0.5299_0.9594_0.8124.png
                gene_name: C11orf30
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 24 percent done.
C10orf120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
Cons ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
KS ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
C10orf120   10000 perm   2 sec   (5724 perm/sec)   p_kst 2.252000e-01   p_cons 5.475000e-01   p_joint 2.995000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf120.7_1020_10000_0.2252_0.5475_0.2995.png
                gene_name: C10orf120
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
C10orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
Cons ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
KS ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
C10orf18   10000 perm   2 sec   (4122 perm/sec)   p_kst 5.318000e-01   p_cons 6.353000e-01   p_joint 7.167000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf18.7_7365_10000_0.5318_0.6353_0.7167.png
                gene_name: C10orf18
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
C10orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
Cons ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
KS ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
C10orf68   10000 perm   2 sec   (5606 perm/sec)   p_kst 2.080000e-01   p_cons 8.830000e-02   p_joint 1.002000e-01

Joint ci ratio: 7.490142e-02	ci left: 1.159203e-01	ci right 1.249904e-01	k: 2408	n:20000
Cons ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
KS ci ratio: 5.402191e-02	ci left: 2.027392e-01	ci right 2.140458e-01	k: 4167	n:20000
C10orf68   20000 perm   4 sec   (5046 perm/sec)   p_kst 2.083500e-01   p_cons 8.705000e-02   p_joint 1.204000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf68.7_1967_20000_0.20835_0.08705_0.1204.png
                gene_name: C10orf68
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
C10orf81
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
C10orf81   10000 perm   2 sec   (6337 perm/sec)   p_kst 2.661000e-01   p_cons 3.434000e-01   p_joint 5.261000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf81.5_1136_10000_0.2661_0.3434_0.5261.png
                gene_name: C10orf81
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 33 percent done.
BZRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.655201e-02	ci left: 4.051195e-01	ci right 4.245302e-01	k: 4148	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
BZRAP1   10000 perm   2 sec   (4375 perm/sec)   p_kst 2.370000e-01   p_cons 8.837000e-01   p_joint 4.148000e-01

Outputting figure to mutsig2_images.part000000000018/BZRAP1.6_5698_10000_0.237_0.8837_0.4148.png
                gene_name: BZRAP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
C11orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
Cons ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
KS ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
C11orf46   10000 perm   2 sec   (6171 perm/sec)   p_kst 6.874000e-01   p_cons 5.058000e-01   p_joint 7.716000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf46.6_795_10000_0.6874_0.5058_0.7716.png
                gene_name: C11orf46
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 37 percent done.
BTNL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
Cons ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
KS ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
BTNL8   10000 perm   2 sec   (6148 perm/sec)   p_kst 5.752000e-01   p_cons 6.337000e-01   p_joint 7.756000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL8.5_1691_10000_0.5752_0.6337_0.7756.png
                gene_name: BTNL8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 39 percent done.
BVES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.778619e-02	ci left: 8.217801e-01	ci right 8.366276e-01	k: 8293	n:10000
Cons ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
KS ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
BVES   10000 perm   2 sec   (6422 perm/sec)   p_kst 7.232000e-01   p_cons 4.180000e-01   p_joint 8.293000e-01

Outputting figure to mutsig2_images.part000000000018/BVES.5_1111_10000_0.7232_0.418_0.8293.png
                gene_name: BVES
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 41 percent done.
C10orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
Cons ci ratio: 5.857854e-02	ci left: 3.001484e-01	ci right 3.183629e-01	k: 3092	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
C10orf2   10000 perm   2 sec   (5918 perm/sec)   p_kst 2.114000e-01   p_cons 3.092000e-01   p_joint 2.321000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf2.5_2090_10000_0.2114_0.3092_0.2321.png
                gene_name: C10orf2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
C10orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
KS ci ratio: 3.933545e-02	ci left: 4.883520e-01	ci right 5.080491e-01	k: 4982	n:10000
C10orf96   10000 perm   2 sec   (6252 perm/sec)   p_kst 4.982000e-01   p_cons 5.817000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf96.5_809_10000_0.4982_0.5817_0.8588.png
                gene_name: C10orf96
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 45 percent done.
BTN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
Cons ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
KS ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
BTN2A1   10000 perm   2 sec   (6603 perm/sec)   p_kst 7.620000e-01   p_cons 4.018000e-01   p_joint 7.310000e-01

Outputting figure to mutsig2_images.part000000000018/BTN2A1.4_1639_10000_0.762_0.4018_0.731.png
                gene_name: BTN2A1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
BTNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
Cons ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
KS ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
BTNL3   10000 perm   2 sec   (6318 perm/sec)   p_kst 6.124000e-01   p_cons 1.757000e-01   p_joint 4.996000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL3.4_1433_10000_0.6124_0.1757_0.4996.png
                gene_name: BTNL3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 49 percent done.
BUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
Cons ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
KS ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
BUB1   10000 perm   2 sec   (5492 perm/sec)   p_kst 7.814000e-01   p_cons 5.191000e-01   p_joint 8.749000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1.4_3358_10000_0.7814_0.5191_0.8749.png
                gene_name: BUB1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 51 percent done.
C10orf11
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
Cons ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
KS ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
C10orf11   10000 perm   2 sec   (6588 perm/sec)   p_kst 6.199000e-01   p_cons 2.175000e-01   p_joint 4.876000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf11.3_621_10000_0.6199_0.2175_0.4876.png
                gene_name: C10orf11
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 53 percent done.
C10orf119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
Cons ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
KS ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
C10orf119   10000 perm   2 sec   (6082 perm/sec)   p_kst 1.369000e-01   p_cons 7.032000e-01   p_joint 3.079000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf119.4_1993_10000_0.1369_0.7032_0.3079.png
                gene_name: C10orf119
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
C10orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KS ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
C10orf28   10000 perm   2 sec   (5626 perm/sec)   p_kst 7.837000e-01   p_cons 4.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf28.4_2361_10000_0.7837_0.431_1.png
                gene_name: C10orf28
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
C10orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
KS ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
C10orf72   10000 perm   2 sec   (6025 perm/sec)   p_kst 8.334000e-01   p_cons 8.368000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf72.4_1118_10000_0.8334_0.8368_1.png
                gene_name: C10orf72
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
BTLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.217011e-02	ci left: 5.878110e-01	ci right 6.071321e-01	k: 5975	n:10000
Cons ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KS ci ratio: 2.629179e-02	ci left: 6.805286e-01	ci right 6.987608e-01	k: 6897	n:10000
BTLA   10000 perm   2 sec   (6513 perm/sec)   p_kst 6.897000e-01   p_cons 2.452000e-01   p_joint 5.975000e-01

Outputting figure to mutsig2_images.part000000000018/BTLA.3_890_10000_0.6897_0.2452_0.5975.png
                gene_name: BTLA
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 61 percent done.
BTN1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 2.510632e-02	ci left: 7.000883e-01	ci right 7.179898e-01	k: 7091	n:10000
BTN1A1   10000 perm   2 sec   (5974 perm/sec)   p_kst 7.091000e-01   p_cons 1.707000e-01   p_joint 5.351000e-01

Outputting figure to mutsig2_images.part000000000018/BTN1A1.3_1609_10000_0.7091_0.1707_0.5351.png
                gene_name: BTN1A1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 63 percent done.
BTN3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
Cons ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
KS ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
BTN3A1   10000 perm   2 sec   (5896 perm/sec)   p_kst 7.476000e-01   p_cons 2.902000e-01   p_joint 6.405000e-01

Outputting figure to mutsig2_images.part000000000018/BTN3A1.3_1746_10000_0.7476_0.2902_0.6405.png
                gene_name: BTN3A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 65 percent done.
BTN3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
Cons ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
BTN3A2   10000 perm   2 sec   (6423 perm/sec)   p_kst 3.460000e-02   p_cons 9.023000e-01   p_joint 9.710000e-02

Joint ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
Cons ci ratio: 9.176610e-03	ci left: 8.970320e-01	ci right 9.053510e-01	k: 18025	n:20000
KS ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
BTN3A2   20000 perm   4 sec   (5703 perm/sec)   p_kst 3.200000e-02   p_cons 9.012500e-01   p_joint 7.765000e-02

Joint ci ratio: 7.817330e-02	ci left: 7.430228e-02	ci right 8.037987e-02	k: 2319	n:30000
Cons ci ratio: 7.529410e-03	ci left: 8.969219e-01	ci right 9.037337e-01	k: 27011	n:30000
KS ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
BTN3A2   30000 perm   6 sec   (5366 perm/sec)   p_kst 3.166667e-02   p_cons 9.003667e-01   p_joint 7.730000e-02

Joint ci ratio: 6.473368e-02	ci left: 8.125015e-02	ci right 8.671042e-02	k: 3358	n:40000
Cons ci ratio: 6.502013e-03	ci left: 8.979049e-01	ci right 9.037868e-01	k: 36035	n:40000
KS ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
BTN3A2   40000 perm   8 sec   (5158 perm/sec)   p_kst 3.092500e-02   p_cons 9.008750e-01   p_joint 8.395000e-02

Joint ci ratio: 4.932758e-02	ci left: 1.093670e-01	ci right 1.149181e-01	k: 5606	n:50000
Cons ci ratio: 5.833542e-03	ci left: 8.976609e-01	ci right 9.029325e-01	k: 45016	n:50000
KS ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
BTN3A2   50000 perm   10 sec   (5054 perm/sec)   p_kst 3.038000e-02   p_cons 9.003200e-01   p_joint 1.121200e-01

Outputting figure to mutsig2_images.part000000000018/BTN3A2.3_1033_50000_0.03038_0.90032_0.11212.png
                gene_name: BTN3A2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 67 percent done.
BTN3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
Cons ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
KS ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
BTN3A3   10000 perm   2 sec   (5983 perm/sec)   p_kst 2.269000e-01   p_cons 1.190000e-01   p_joint 1.429000e-01

Joint ci ratio: 6.404719e-02	ci left: 1.526740e-01	ci right 1.628258e-01	k: 3154	n:20000
Cons ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
KS ci ratio: 5.153164e-02	ci left: 2.185840e-01	ci right 2.301962e-01	k: 4487	n:20000
BTN3A3   20000 perm   4 sec   (5330 perm/sec)   p_kst 2.243500e-01   p_cons 1.270500e-01   p_joint 1.577000e-01

Outputting figure to mutsig2_images.part000000000018/BTN3A3.3_1791_20000_0.22435_0.12705_0.1577.png
                gene_name: BTN3A3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 69 percent done.
C10orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
Cons ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
KS ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
C10orf27   10000 perm   2 sec   (6430 perm/sec)   p_kst 4.171000e-01   p_cons 4.483000e-01   p_joint 5.123000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf27.3_1092_10000_0.4171_0.4483_0.5123.png
                gene_name: C10orf27
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 71 percent done.
C11orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
Cons ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
KS ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
C11orf16   10000 perm   2 sec   (6259 perm/sec)   p_kst 1.260000e-02   p_cons 4.449000e-01   p_joint 3.310000e-02

Joint ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
Cons ci ratio: 3.203462e-02	ci left: 4.212284e-01	ci right 4.349925e-01	k: 8562	n:20000
KS ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
C11orf16   20000 perm   4 sec   (5574 perm/sec)   p_kst 1.065000e-02   p_cons 4.281000e-01   p_joint 2.750000e-02

Joint ci ratio: 1.103469e-01	ci left: 3.813500e-02	ci right 4.262124e-02	k: 1210	n:30000
Cons ci ratio: 2.621578e-02	ci left: 4.213933e-01	ci right 4.326208e-01	k: 12810	n:30000
KS ci ratio: 2.255632e-01	ci left: 8.842131e-03	ci right 1.112094e-02	k: 298	n:30000
C11orf16   30000 perm   6 sec   (5311 perm/sec)   p_kst 9.933333e-03   p_cons 4.270000e-01   p_joint 4.033333e-02

Joint ci ratio: 1.348937e-01	ci left: 1.927875e-02	ci right 2.209144e-02	k: 826	n:40000
Cons ci ratio: 2.154555e-02	ci left: 4.479130e-01	ci right 4.576938e-01	k: 18112	n:40000
KS ci ratio: 1.960075e-01	ci left: 8.929192e-03	ci right 1.089294e-02	k: 395	n:40000
C11orf16   40000 perm   8 sec   (5133 perm/sec)   p_kst 9.875000e-03   p_cons 4.528000e-01   p_joint 2.065000e-02

Joint ci ratio: 1.028358e-01	ci left: 2.678591e-02	ci right 2.970920e-02	k: 1411	n:50000
Cons ci ratio: 1.923535e-02	ci left: 4.493490e-01	ci right 4.580964e-01	k: 22686	n:50000
KS ci ratio: 1.763978e-01	ci left: 8.916851e-03	ci right 1.066077e-02	k: 488	n:50000
C11orf16   50000 perm   10 sec   (4994 perm/sec)   p_kst 9.760000e-03   p_cons 4.537200e-01   p_joint 2.822000e-02

Joint ci ratio: 8.472271e-02	ci left: 3.298856e-02	ci right 3.592336e-02	k: 2066	n:60000
Cons ci ratio: 1.753660e-02	ci left: 4.503766e-01	ci right 4.583612e-01	k: 27262	n:60000
KS ci ratio: 1.593641e-01	ci left: 9.187279e-03	ci right 1.079398e-02	k: 598	n:60000
C11orf16   60000 perm   12 sec   (4878 perm/sec)   p_kst 9.966667e-03   p_cons 4.543667e-01   p_joint 3.443333e-02

Joint ci ratio: 8.884578e-02	ci left: 2.585372e-02	ci right 2.827142e-02	k: 1893	n:70000
Cons ci ratio: 1.622396e-02	ci left: 4.510346e-01	ci right 4.584263e-01	k: 31831	n:70000
KS ci ratio: 1.487113e-01	ci left: 9.097242e-03	ci right 1.057239e-02	k: 687	n:70000
C11orf16   70000 perm   15 sec   (4771 perm/sec)   p_kst 9.814286e-03   p_cons 4.547286e-01   p_joint 2.704286e-02

Joint ci ratio: 8.445202e-02	ci left: 2.511635e-02	ci right 2.734319e-02	k: 2097	n:80000
Cons ci ratio: 1.521881e-02	ci left: 4.498834e-01	ci right 4.567950e-01	k: 36267	n:80000
KS ci ratio: 1.407694e-01	ci left: 8.923832e-03	ci right 1.028709e-02	k: 767	n:80000
C11orf16   80000 perm   17 sec   (4672 perm/sec)   p_kst 9.587500e-03   p_cons 4.533375e-01   p_joint 2.621250e-02

Joint ci ratio: 7.948827e-02	ci left: 2.526425e-02	ci right 2.736643e-02	k: 2367	n:90000
Cons ci ratio: 1.432930e-02	ci left: 4.507432e-01	ci right 4.572597e-01	k: 40860	n:90000
KS ci ratio: 1.324867e-01	ci left: 8.994739e-03	ci right 1.028161e-02	k: 866	n:90000
C11orf16   90000 perm   20 sec   (4585 perm/sec)   p_kst 9.622222e-03   p_cons 4.540000e-01   p_joint 2.630000e-02

Joint ci ratio: 7.794266e-02	ci left: 2.370759e-02	ci right 2.564012e-02	k: 2466	n:100000
Cons ci ratio: 1.357591e-02	ci left: 4.515701e-01	ci right 4.577525e-01	k: 45466	n:100000
KS ci ratio: 1.258419e-01	ci left: 9.004906e-03	ci right 1.022379e-02	k: 960	n:100000
C11orf16   100000 perm   22 sec   (4505 perm/sec)   p_kst 9.600000e-03   p_cons 4.546600e-01   p_joint 2.466000e-02

Joint ci ratio: 7.795148e-02	ci left: 2.159599e-02	ci right 2.335658e-02	k: 2471	n:110000
Cons ci ratio: 1.294737e-02	ci left: 4.515905e-01	ci right 4.574846e-01	k: 49999	n:110000
KS ci ratio: 1.187498e-01	ci left: 9.226269e-03	ci right 1.039979e-02	k: 1078	n:110000
C11orf16   110000 perm   25 sec   (4423 perm/sec)   p_kst 9.800000e-03   p_cons 4.545364e-01   p_joint 2.246364e-02

Joint ci ratio: 7.420790e-02	ci left: 2.188102e-02	ci right 2.357548e-02	k: 2726	n:120000
Cons ci ratio: 1.238626e-02	ci left: 4.521128e-01	ci right 4.577560e-01	k: 54592	n:120000
KS ci ratio: 1.142391e-01	ci left: 9.161272e-03	ci right 1.027928e-02	k: 1165	n:120000
C11orf16   120000 perm   28 sec   (4344 perm/sec)   p_kst 9.708333e-03   p_cons 4.549333e-01   p_joint 2.271667e-02

Joint ci ratio: 8.284503e-02	ci left: 1.622887e-02	ci right 1.763895e-02	k: 2200	n:130000
Cons ci ratio: 1.189321e-02	ci left: 4.525209e-01	ci right 4.579427e-01	k: 59180	n:130000
KS ci ratio: 1.096333e-01	ci left: 9.204268e-03	ci right 1.027931e-02	k: 1265	n:130000
C11orf16   130000 perm   30 sec   (4272 perm/sec)   p_kst 9.730769e-03   p_cons 4.552308e-01   p_joint 1.692308e-02

Joint ci ratio: 8.251593e-02	ci left: 1.520924e-02	ci right 1.652521e-02	k: 2220	n:140000
Cons ci ratio: 1.145422e-02	ci left: 4.528958e-01	ci right 4.581203e-01	k: 63771	n:140000
KS ci ratio: 1.056213e-01	ci left: 9.227984e-03	ci right 1.026390e-02	k: 1363	n:140000
C11orf16   140000 perm   33 sec   (4204 perm/sec)   p_kst 9.735714e-03   p_cons 4.555071e-01   p_joint 1.585714e-02

Joint ci ratio: 7.978005e-02	ci left: 1.520765e-02	ci right 1.647783e-02	k: 2375	n:150000
Cons ci ratio: 1.104861e-02	ci left: 4.537569e-01	ci right 4.588048e-01	k: 68442	n:150000
KS ci ratio: 1.018791e-01	ci left: 9.275153e-03	ci right 1.027727e-02	k: 1465	n:150000
C11orf16   150000 perm   36 sec   (4138 perm/sec)   p_kst 9.766667e-03   p_cons 4.562800e-01   p_joint 1.583333e-02

Joint ci ratio: 7.848949e-02	ci left: 1.474714e-02	ci right 1.595801e-02	k: 2455	n:160000
Cons ci ratio: 1.070638e-02	ci left: 4.534385e-01	ci right 4.583256e-01	k: 72941	n:160000
KS ci ratio: 9.889125e-02	ci left: 9.243827e-03	ci right 1.021156e-02	k: 1555	n:160000
C11orf16   160000 perm   39 sec   (4076 perm/sec)   p_kst 9.718750e-03   p_cons 4.558813e-01   p_joint 1.534375e-02

Outputting figure to mutsig2_images.part000000000018/C11orf16.3_1424_160000_0.0097187_0.45588_0.015344.png
                gene_name: C11orf16
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 73 percent done.
BTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
Cons ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
BTG2   10000 perm   1 sec   (7309 perm/sec)   p_kst 4.390000e-02   p_cons 5.125000e-01   p_joint 3.223000e-01

Joint ci ratio: 8.280953e-02	ci left: 9.656264e-02	ci right 1.049538e-01	k: 2014	n:20000
Cons ci ratio: 2.578026e-02	ci left: 5.292088e-01	ci right 5.430807e-01	k: 10723	n:20000
KS ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
BTG2   20000 perm   3 sec   (6338 perm/sec)   p_kst 4.305000e-02   p_cons 5.361500e-01   p_joint 1.007000e-01

Joint ci ratio: 4.076197e-02	ci left: 2.308070e-01	ci right 2.404443e-01	k: 7068	n:30000
Cons ci ratio: 2.103375e-02	ci left: 5.308706e-01	ci right 5.421890e-01	k: 16096	n:30000
KS ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
BTG2   30000 perm   5 sec   (5970 perm/sec)   p_kst 4.203333e-02   p_cons 5.365333e-01   p_joint 2.356000e-01

Joint ci ratio: 2.250206e-02	ci left: 4.265141e-01	ci right 4.362459e-01	k: 17255	n:40000
Cons ci ratio: 1.905036e-02	ci left: 5.092887e-01	ci right 5.191093e-01	k: 20568	n:40000
KS ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
BTG2   40000 perm   7 sec   (5740 perm/sec)   p_kst 4.120000e-02   p_cons 5.142000e-01   p_joint 4.313750e-01

Outputting figure to mutsig2_images.part000000000018/BTG2.2_485_40000_0.0412_0.5142_0.43138.png
                gene_name: BTG2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 76 percent done.
BTN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
KS ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
BTN2A2   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.234000e-01   p_cons 9.871000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BTN2A2.2_1600_10000_0.3234_0.9871_1.png
                gene_name: BTN2A2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
BTNL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
Cons ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
KS ci ratio: 4.775176e-02	ci left: 3.928679e-01	ci right 4.121890e-01	k: 4025	n:10000
BTNL9   10000 perm   2 sec   (6454 perm/sec)   p_kst 4.025000e-01   p_cons 7.464000e-01   p_joint 7.230000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL9.2_1648_10000_0.4025_0.7464_0.723.png
                gene_name: BTNL9
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 80 percent done.
BYSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
KS ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
BYSL   10000 perm   2 sec   (6550 perm/sec)   p_kst 5.195000e-01   p_cons 1.607000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BYSL.2_1342_10000_0.5195_0.1607_1.png
                gene_name: BYSL
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
C10orf107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
C10orf107   10000 perm   1 sec   (7287 perm/sec)   p_kst 3.493000e-01   p_cons 4.050000e-02   p_joint 1.446000e-01

Joint ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
Cons ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
KS ci ratio: 3.761693e-02	ci left: 3.452286e-01	ci right 3.585145e-01	k: 7037	n:20000
C10orf107   20000 perm   3 sec   (6324 perm/sec)   p_kst 3.518500e-01   p_cons 4.140000e-02   p_joint 1.014000e-01

Joint ci ratio: 7.055222e-02	ci left: 8.999878e-02	ci right 9.661356e-02	k: 2798	n:30000
Cons ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
KS ci ratio: 3.041564e-02	ci left: 3.509115e-01	ci right 3.617830e-01	k: 10690	n:30000
C10orf107   30000 perm   5 sec   (5986 perm/sec)   p_kst 3.563333e-01   p_cons 4.140000e-02   p_joint 9.326667e-02

Joint ci ratio: 7.576429e-02	ci left: 6.034361e-02	ci right 6.512011e-02	k: 2508	n:40000
Cons ci ratio: 9.461098e-02	ci left: 3.919983e-02	ci right 4.311713e-02	k: 1645	n:40000
KS ci ratio: 2.651047e-02	ci left: 3.487137e-01	ci right 3.581076e-01	k: 14136	n:40000
C10orf107   40000 perm   7 sec   (5748 perm/sec)   p_kst 3.534000e-01   p_cons 4.112500e-02   p_joint 6.270000e-02

Outputting figure to mutsig2_images.part000000000018/C10orf107.2_651_40000_0.3534_0.041125_0.0627.png
                gene_name: C10orf107
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 84 percent done.
C10orf111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
KS ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
C10orf111   10000 perm   1 sec   (7070 perm/sec)   p_kst 6.613000e-01   p_cons 5.657000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf111.2_472_10000_0.6613_0.5657_1.png
                gene_name: C10orf111
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
C10orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
C10orf118   10000 perm   2 sec   (6015 perm/sec)   p_kst 8.268000e-01   p_cons 4.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf118.2_2757_10000_0.8268_0.4851_1.png
                gene_name: C10orf118
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
C10orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.122527e-03	ci left: 9.441937e-01	ci right 9.529427e-01	k: 9487	n:10000
Cons ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
KS ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
C10orf53   10000 perm   1 sec   (6804 perm/sec)   p_kst 5.345000e-01   p_cons 7.623000e-01   p_joint 9.487000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf53.2_555_10000_0.5345_0.7623_0.9487.png
                gene_name: C10orf53
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 90 percent done.
C10orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
KS ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
C10orf82   10000 perm   1 sec   (6966 perm/sec)   p_kst 6.489000e-01   p_cons 1.046000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
KS ci ratio: 2.022741e-02	ci left: 6.458539e-01	ci right 6.591018e-01	k: 13050	n:20000
C10orf82   20000 perm   3 sec   (6149 perm/sec)   p_kst 6.525000e-01   p_cons 1.033000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf82.2_481_20000_0.6525_0.1033_1.png
                gene_name: C10orf82
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
C11orf1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940461e-02	ci left: 7.952698e-01	ci right 8.109533e-01	k: 8032	n:10000
Cons ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
KS ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
C11orf1   10000 perm   1 sec   (7131 perm/sec)   p_kst 3.485000e-01   p_cons 1.394000e-01   p_joint 8.032000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf1.2_469_10000_0.3485_0.1394_0.8032.png
                gene_name: C11orf1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 94 percent done.
C11orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.131878e-03	ci left: 9.440897e-01	ci right 9.528467e-01	k: 9486	n:10000
Cons ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
KS ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
C11orf2   10000 perm   2 sec   (5920 perm/sec)   p_kst 4.348000e-01   p_cons 4.219000e-01   p_joint 9.486000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf2.2_2389_10000_0.4348_0.4219_0.9486.png
                gene_name: C11orf2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
C11orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
KS ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
C11orf35   10000 perm   2 sec   (6284 perm/sec)   p_kst 9.081000e-01   p_cons 6.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf35.2_1961_10000_0.9081_0.6279_1.png
                gene_name: C11orf35
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
C11orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.616904e-02	ci left: 6.825442e-01	ci right 7.007441e-01	k: 6917	n:10000
Cons ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
KS ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
C11orf48   10000 perm   1 sec   (6785 perm/sec)   p_kst 5.127000e-01   p_cons 8.734000e-01   p_joint 6.917000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf48.2_816_10000_0.5127_0.8734_0.6917.png
                gene_name: C11orf48
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000018
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 18 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1541>
Subject: Job 4421752: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1541>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000019> was used as the working directory.
Started at Wed Oct 24 17:31:36 2012
Results reported at Wed Oct 24 17:42:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000019.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000019.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 19  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000019.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    787.45 sec.
    Max Memory :      5312 MB
    Max Swap   :      7657 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
19
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 19
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 19: processing genes 1629 - 1719
Calculating significance of each gene.
Using projection method.
1629	C11orf49	9.503121e-01
1630	C11orf51	1
1631	C11orf52	2.152807e-02
1632	C11orf53	2.720404e-01
1633	C11orf54	5.028442e-01
1634	C11orf57	1
1635	C11orf58	1
1636	C11orf59	1
1637	C11orf61	7.459292e-01
1638	C11orf63	6.846950e-01
1639	C11orf65	1
1640	C11orf66	7.413664e-02
1641	C11orf67	1
1642	C11orf68	6.130439e-01
1643	C11orf70	2.576667e-01
1644	C11orf71	5.637621e-01
1645	C11orf73	1
1646	C11orf74	3.768335e-02
1647	C11orf75	1
1648	C11orf80	8.604848e-01
1649	C11orf82	4.115572e-01
1650	C11orf83	1
1651	C11orf84	1
1652	C11orf85	1
1653	C11orf87	2.272318e-02
1654	C11orf88	3.639795e-01
1655	C11orf9	6.557183e-01
1656	C11orf92	1
1657	C11orf94	1
1658	C12orf10	6.483538e-01
1659	C12orf11	1
1660	C12orf12	7.686085e-02
1661	C12orf23	5.230343e-01
1662	C12orf24	1
1663	C12orf26	2.693504e-01
1664	C12orf29	8.564795e-01
1665	C12orf34	7.710132e-01
1666	C12orf35	9.995844e-01
1667	C12orf36	3.876163e-01
1668	C12orf39	1
1669	C12orf4	8.397852e-01
1670	C12orf40	1.395335e-01
1671	C12orf41	8.663247e-01
1672	C12orf42	5.932187e-02
1673	C12orf43	2.898173e-01
1674	C12orf44	6.772437e-01
1675	C12orf45	6.590509e-01
1676	C12orf48	5.375609e-01
1677	C12orf49	7.574269e-01
1678	C12orf5	4.774719e-01
1679	C12orf50	6.272990e-01
1680	C12orf51	1
1681	C12orf52	1
1682	C12orf53	1
1683	C12orf54	1
1684	C12orf56	4.183133e-01
1685	C12orf57	1
1686	C12orf59	6.386248e-01
1687	C12orf60	6.344674e-01
1688	C12orf61	6.532399e-02
1689	C12orf62	1
1690	C12orf63	9.948422e-01
1691	C12orf64	1
1692	C12orf65	5.300872e-01
1693	C12orf66	9.154792e-01
1694	C12orf68	3.983044e-01
1695	C12orf69	7.264076e-01
1696	C12orf71	2.171923e-01
1697	C12orf72	5.980735e-01
1698	C12orf74	8.866992e-02
1699	C12orf76	1
1700	C12orf77	1
1701	C13orf1	5.417265e-01
1702	C13orf15	3.128282e-01
1703	C13orf16	4.736833e-01
1704	C13orf18	4.051056e-01
1705	C13orf23	9.141570e-01
In gene C13orf26 the following bins exceed PROBCAP:
    LUAD-75-6205-TP	categ 6	N = 898     n = 1	mu =   1.67e-07
1706	C13orf26	1.098076e-02
1707	C13orf27	6.478493e-01
1708	C13orf28	3.577234e-01
1709	C13orf30	2.846650e-01
1710	C13orf31	5.199722e-01
1711	C13orf33	6.031038e-01
1712	C13orf34	1
1713	C13orf35	1
1714	C13orf36	1
1715	C13orf37	4.218674e-01
1716	C13orf39	1
1717	C14orf1	6.393481e-01
1718	C14orf101	9.309929e-01
1719	C14orf102	7.548404e-01
Done

Running MutSig 2:
Scatter job 19: processing genes 1629 - 1719
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C12orf51
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
Cons ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
KS ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
C12orf51   10000 perm   5 sec   (1946 perm/sec)   p_kst 1.883000e-01   p_cons 3.342000e-01   p_joint 3.147000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf51.19_13037_10000_0.1883_0.3342_0.3147.png
                gene_name: C12orf51
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 3 percent done.
C12orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
C12orf35   10000 perm   3 sec   (3569 perm/sec)   p_kst 5.117000e-01   p_cons 5.440000e-01   p_joint 7.686000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf35.13_5256_10000_0.5117_0.544_0.7686.png
                gene_name: C12orf35
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 5 percent done.
C11orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
Cons ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
KS ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
C11orf82   10000 perm   2 sec   (4615 perm/sec)   p_kst 3.539000e-01   p_cons 9.586000e-01   p_joint 5.710000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf82.9_3013_10000_0.3539_0.9586_0.571.png
                gene_name: C11orf82
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 8 percent done.
C12orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
C12orf12   10000 perm   2 sec   (5782 perm/sec)   p_kst 9.287000e-01   p_cons 5.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf12.7_1225_10000_0.9287_0.5582_1.png
                gene_name: C12orf12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
C12orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
KS ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
C12orf63   10000 perm   2 sec   (4357 perm/sec)   p_kst 9.289000e-01   p_cons 6.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf63.7_3698_10000_0.9289_0.6375_1.png
                gene_name: C12orf63
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
C14orf102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
C14orf102   10000 perm   2 sec   (4633 perm/sec)   p_kst 4.242000e-01   p_cons 9.100000e-03   p_joint 7.500000e-02

Joint ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
Cons ci ratio: 2.976019e-01	ci left: 7.320842e-03	ci right 9.925044e-03	k: 171	n:20000
KS ci ratio: 3.228445e-02	ci left: 4.174368e-01	ci right 4.311852e-01	k: 8486	n:20000
C14orf102   20000 perm   5 sec   (4122 perm/sec)   p_kst 4.243000e-01   p_cons 8.550000e-03   p_joint 4.420000e-02

Joint ci ratio: 1.031049e-01	ci left: 4.359187e-02	ci right 4.836322e-02	k: 1378	n:30000
Cons ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
KS ci ratio: 2.640415e-02	ci left: 4.178997e-01	ci right 4.291152e-01	k: 12705	n:30000
C14orf102   30000 perm   8 sec   (3924 perm/sec)   p_kst 4.235000e-01   p_cons 8.566667e-03   p_joint 4.593333e-02

Joint ci ratio: 9.044941e-02	ci left: 4.281783e-02	ci right 4.689857e-02	k: 1793	n:40000
Cons ci ratio: 1.957580e-01	ci left: 8.952977e-03	ci right 1.091915e-02	k: 396	n:40000
KS ci ratio: 2.279224e-02	ci left: 4.202485e-01	ci right 4.299624e-01	k: 17004	n:40000
C14orf102   40000 perm   11 sec   (3806 perm/sec)   p_kst 4.251000e-01   p_cons 9.900000e-03   p_joint 4.482500e-02

Joint ci ratio: 8.734828e-02	ci left: 3.702620e-02	ci right 4.042762e-02	k: 1935	n:50000
Cons ci ratio: 1.733795e-01	ci left: 9.242099e-03	ci right 1.101547e-02	k: 505	n:50000
KS ci ratio: 2.042628e-02	ci left: 4.198026e-01	ci right 4.284862e-01	k: 21207	n:50000
C14orf102   50000 perm   13 sec   (3714 perm/sec)   p_kst 4.241400e-01   p_cons 1.010000e-02   p_joint 3.870000e-02

Joint ci ratio: 8.789948e-02	ci left: 3.067132e-02	ci right 3.350751e-02	k: 1924	n:60000
Cons ci ratio: 1.580369e-01	ci left: 9.347386e-03	ci right 1.096719e-02	k: 608	n:60000
KS ci ratio: 1.862721e-02	ci left: 4.206903e-01	ci right 4.286170e-01	k: 25479	n:60000
C14orf102   60000 perm   16 sec   (3641 perm/sec)   p_kst 4.246500e-01   p_cons 1.013333e-02   p_joint 3.206667e-02

Joint ci ratio: 8.355319e-02	ci left: 2.921049e-02	ci right 3.177148e-02	k: 2133	n:70000
Cons ci ratio: 1.460546e-01	ci left: 9.441334e-03	ci right 1.094254e-02	k: 712	n:70000
KS ci ratio: 1.725384e-02	ci left: 4.207489e-01	ci right 4.280859e-01	k: 29709	n:70000
C14orf102   70000 perm   20 sec   (3572 perm/sec)   p_kst 4.244143e-01   p_cons 1.017143e-02   p_joint 3.047143e-02

Joint ci ratio: 6.232050e-02	ci left: 4.565447e-02	ci right 4.860348e-02	k: 3769	n:80000
Cons ci ratio: 1.465640e-01	ci left: 8.212610e-03	ci right 9.523379e-03	k: 708	n:80000
KS ci ratio: 1.613135e-02	ci left: 4.212338e-01	ci right 4.280966e-01	k: 33973	n:80000
C14orf102   80000 perm   23 sec   (3504 perm/sec)   p_kst 4.246625e-01   p_cons 8.850000e-03   p_joint 4.711250e-02

Joint ci ratio: 6.277885e-02	ci left: 4.021718e-02	ci right 4.283470e-02	k: 3736	n:90000
Cons ci ratio: 1.378879e-01	ci left: 8.285989e-03	ci right 9.523753e-03	k: 800	n:90000
KS ci ratio: 1.520903e-02	ci left: 4.214232e-01	ci right 4.278928e-01	k: 38219	n:90000
C14orf102   90000 perm   26 sec   (3443 perm/sec)   p_kst 4.246556e-01   p_cons 8.888889e-03   p_joint 4.151111e-02

Joint ci ratio: 6.341885e-02	ci left: 3.563171e-02	ci right 3.797525e-02	k: 3679	n:100000
Cons ci ratio: 1.320146e-01	ci left: 8.162715e-03	ci right 9.326048e-03	k: 873	n:100000
KS ci ratio: 1.444116e-02	ci left: 4.211640e-01	ci right 4.273003e-01	k: 42423	n:100000
C14orf102   100000 perm   30 sec   (3385 perm/sec)   p_kst 4.242300e-01   p_cons 8.730000e-03   p_joint 3.679000e-02

Joint ci ratio: 6.222851e-02	ci left: 3.373363e-02	ci right 3.590916e-02	k: 3829	n:110000
Cons ci ratio: 1.265635e-01	ci left: 8.097997e-03	ci right 9.200871e-03	k: 950	n:110000
KS ci ratio: 1.379152e-02	ci left: 4.205140e-01	ci right 4.263628e-01	k: 46578	n:110000
C14orf102   110000 perm   33 sec   (3329 perm/sec)   p_kst 4.234364e-01   p_cons 8.636364e-03   p_joint 3.480909e-02

Joint ci ratio: 5.881909e-02	ci left: 3.464086e-02	ci right 3.674833e-02	k: 4282	n:120000
Cons ci ratio: 1.196409e-01	ci left: 8.335909e-03	ci right 9.404695e-03	k: 1063	n:120000
KS ci ratio: 1.320155e-02	ci left: 4.207437e-01	ci right 4.263433e-01	k: 50825	n:120000
C14orf102   120000 perm   37 sec   (3277 perm/sec)   p_kst 4.235417e-01   p_cons 8.858333e-03   p_joint 3.568333e-02

Joint ci ratio: 6.056784e-02	ci left: 3.026912e-02	ci right 3.216725e-02	k: 4057	n:130000
Cons ci ratio: 1.150816e-01	ci left: 8.336806e-03	ci right 9.362205e-03	k: 1149	n:130000
KS ci ratio: 1.268253e-02	ci left: 4.208964e-01	ci right 4.262762e-01	k: 55066	n:130000
C14orf102   130000 perm   40 sec   (3228 perm/sec)   p_kst 4.235846e-01   p_cons 8.838462e-03   p_joint 3.120769e-02

Joint ci ratio: 5.904556e-02	ci left: 2.961949e-02	ci right 3.142860e-02	k: 4272	n:140000
Cons ci ratio: 1.111885e-01	ci left: 8.310455e-03	ci right 9.295765e-03	k: 1231	n:140000
KS ci ratio: 1.220725e-02	ci left: 4.215521e-01	ci right 4.267368e-01	k: 59380	n:140000
C14orf102   140000 perm   44 sec   (3183 perm/sec)   p_kst 4.241429e-01   p_cons 8.792857e-03   p_joint 3.051429e-02

Joint ci ratio: 5.870569e-02	ci left: 2.801857e-02	ci right 2.971970e-02	k: 4329	n:150000
Cons ci ratio: 1.035321e-01	ci left: 8.976293e-03	ci right 9.962808e-03	k: 1419	n:150000
KS ci ratio: 1.179404e-02	ci left: 4.216105e-01	ci right 4.266191e-01	k: 63617	n:150000
C14orf102   150000 perm   48 sec   (3136 perm/sec)   p_kst 4.241133e-01   p_cons 9.460000e-03   p_joint 2.886000e-02

Joint ci ratio: 5.515890e-02	ci left: 2.975530e-02	ci right 3.144926e-02	k: 4895	n:160000
Cons ci ratio: 9.990108e-02	ci left: 9.054850e-03	ci right 1.001305e-02	k: 1524	n:160000
KS ci ratio: 1.141474e-02	ci left: 4.218953e-01	ci right 4.267450e-01	k: 67891	n:160000
C14orf102   160000 perm   52 sec   (3091 perm/sec)   p_kst 4.243188e-01   p_cons 9.525000e-03   p_joint 3.059375e-02

Outputting figure to mutsig2_images.part000000000019/C14orf102.7_3551_160000_0.42432_0.009525_0.030594.png
                gene_name: C14orf102
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.0095 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 16 percent done.
C11orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
Cons ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
KS ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
C11orf63   10000 perm   2 sec   (4787 perm/sec)   p_kst 2.511000e-01   p_cons 4.240000e-02   p_joint 7.320000e-02

Joint ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
Cons ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
KS ci ratio: 4.754681e-02	ci left: 2.475815e-01	ci right 2.596902e-01	k: 5072	n:20000
C11orf63   20000 perm   5 sec   (4271 perm/sec)   p_kst 2.536000e-01   p_cons 4.040000e-02   p_joint 6.375000e-02

Joint ci ratio: 7.732756e-02	ci left: 7.584092e-02	ci right 8.197426e-02	k: 2366	n:30000
Cons ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
KS ci ratio: 3.893675e-02	ci left: 2.475913e-01	ci right 2.574566e-01	k: 7575	n:30000
C11orf63   30000 perm   7 sec   (4086 perm/sec)   p_kst 2.525000e-01   p_cons 4.003333e-02   p_joint 7.886667e-02

Joint ci ratio: 8.669564e-02	ci left: 4.651307e-02	ci right 5.075276e-02	k: 1944	n:40000
Cons ci ratio: 9.674552e-02	ci left: 3.751450e-02	ci right 4.135273e-02	k: 1576	n:40000
KS ci ratio: 3.303181e-02	ci left: 2.560795e-01	ci right 2.647053e-01	k: 10415	n:40000
C11orf63   40000 perm   10 sec   (3964 perm/sec)   p_kst 2.603750e-01   p_cons 3.940000e-02   p_joint 4.860000e-02

Outputting figure to mutsig2_images.part000000000019/C11orf63.6_2433_40000_0.26038_0.0394_0.0486.png
                gene_name: C11orf63
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 19 percent done.
C11orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
C11orf66   10000 perm   2 sec   (5579 perm/sec)   p_kst 6.019000e-01   p_cons 8.809000e-01   p_joint 9.041000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf66.6_1326_10000_0.6019_0.8809_0.9041.png
                gene_name: C11orf66
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 22 percent done.
C11orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
C11orf9   10000 perm   2 sec   (4872 perm/sec)   p_kst 1.904000e-01   p_cons 1.531000e-01   p_joint 2.520000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf9.6_3590_10000_0.1904_0.1531_0.252.png
                gene_name: C11orf9
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
C12orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
C12orf40   10000 perm   2 sec   (5244 perm/sec)   p_kst 3.106000e-01   p_cons 4.894000e-01   p_joint 6.178000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf40.6_2011_10000_0.3106_0.4894_0.6178.png
                gene_name: C12orf40
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 27 percent done.
C12orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
Cons ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
KS ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
C12orf42   10000 perm   2 sec   (5784 perm/sec)   p_kst 5.213000e-01   p_cons 5.296000e-01   p_joint 7.319000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf42.5_1103_10000_0.5213_0.5296_0.7319.png
                gene_name: C12orf42
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 30 percent done.
C13orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
C13orf26   10000 perm   2 sec   (5502 perm/sec)   p_kst 6.073000e-01   p_cons 7.157000e-01   p_joint 7.463000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf26.5_898_10000_0.6073_0.7157_0.7463.png
                gene_name: C13orf26
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 32 percent done.
C11orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
C11orf53   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.001000e-01   p_cons 7.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C11orf53.4_723_10000_0.8001_0.7438_1.png
                gene_name: C11orf53
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
C11orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
Cons ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
KS ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
C11orf74   10000 perm   2 sec   (6009 perm/sec)   p_kst 1.347000e-01   p_cons 4.803000e-01   p_joint 4.825000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf74.4_686_10000_0.1347_0.4803_0.4825.png
                gene_name: C11orf74
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 38 percent done.
C11orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
C11orf87   10000 perm   2 sec   (5783 perm/sec)   p_kst 4.468000e-01   p_cons 8.567000e-01   p_joint 7.221000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf87.4_598_10000_0.4468_0.8567_0.7221.png
                gene_name: C11orf87
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 41 percent done.
C12orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
Cons ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
KS ci ratio: 3.347720e-02	ci left: 5.684492e-01	ci right 5.879053e-01	k: 5782	n:10000
C12orf11   10000 perm   2 sec   (5555 perm/sec)   p_kst 5.782000e-01   p_cons 6.283000e-01   p_joint 7.001000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf11.4_2185_10000_0.5782_0.6283_0.7001.png
                gene_name: C12orf11
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 43 percent done.
C12orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
Cons ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
KS ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
C12orf26   10000 perm   2 sec   (5128 perm/sec)   p_kst 3.500000e-02   p_cons 6.066000e-01   p_joint 6.140000e-02

Joint ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
Cons ci ratio: 2.272531e-02	ci left: 5.911660e-01	ci right 6.048055e-01	k: 11960	n:20000
KS ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
C12orf26   20000 perm   4 sec   (4630 perm/sec)   p_kst 3.560000e-02   p_cons 5.980000e-01   p_joint 9.045000e-02

Joint ci ratio: 8.398520e-02	ci left: 6.484973e-02	ci right 7.056767e-02	k: 2030	n:30000
Cons ci ratio: 1.853747e-02	ci left: 5.928936e-01	ci right 6.040207e-01	k: 17954	n:30000
KS ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
C12orf26   30000 perm   7 sec   (4447 perm/sec)   p_kst 3.600000e-02   p_cons 5.984667e-01   p_joint 6.766667e-02

Joint ci ratio: 6.203036e-02	ci left: 8.795225e-02	ci right 9.360732e-02	k: 3630	n:40000
Cons ci ratio: 1.557375e-02	ci left: 6.081812e-01	ci right 6.177523e-01	k: 24519	n:40000
KS ci ratio: 1.015699e-01	ci left: 3.407370e-02	ci right 3.774407e-02	k: 1435	n:40000
C12orf26   40000 perm   9 sec   (4323 perm/sec)   p_kst 3.587500e-02   p_cons 6.129750e-01   p_joint 9.075000e-02

Joint ci ratio: 5.658385e-02	ci left: 8.509647e-02	ci right 9.007153e-02	k: 4378	n:50000
Cons ci ratio: 1.391425e-02	ci left: 6.092153e-01	ci right 6.177715e-01	k: 30675	n:50000
KS ci ratio: 9.087332e-02	ci left: 3.424718e-02	ci right 3.752699e-02	k: 1793	n:50000
C12orf26   50000 perm   12 sec   (4217 perm/sec)   p_kst 3.586000e-02   p_cons 6.135000e-01   p_joint 8.756000e-02

Outputting figure to mutsig2_images.part000000000019/C12orf26.4_1860_50000_0.03586_0.6135_0.08756.png
                gene_name: C12orf26
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 46 percent done.
C13orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
Cons ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
C13orf18   10000 perm   2 sec   (5406 perm/sec)   p_kst 6.037000e-01   p_cons 9.738000e-01   p_joint 7.672000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf18.4_2041_10000_0.6037_0.9738_0.7672.png
                gene_name: C13orf18
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 49 percent done.
C13orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
C13orf23   10000 perm   2 sec   (4913 perm/sec)   p_kst 5.303000e-01   p_cons 9.204000e-01   p_joint 6.685000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf23.4_2887_10000_0.5303_0.9204_0.6685.png
                gene_name: C13orf23
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 51 percent done.
C11orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
Cons ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
C11orf52   10000 perm   2 sec   (6613 perm/sec)   p_kst 4.578000e-01   p_cons 2.855000e-01   p_joint 8.052000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf52.3_388_10000_0.4578_0.2855_0.8052.png
                gene_name: C11orf52
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 54 percent done.
C12orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 2.790168e-02	ci left: 6.543436e-01	ci right 6.729609e-01	k: 6637	n:10000
C12orf10   10000 perm   2 sec   (6354 perm/sec)   p_kst 6.637000e-01   p_cons 2.547000e-01   p_joint 4.359000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf10.3_1159_10000_0.6637_0.2547_0.4359.png
                gene_name: C12orf10
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
C12orf5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
C12orf5   10000 perm   2 sec   (6289 perm/sec)   p_kst 6.900000e-03   p_cons 5.462000e-01   p_joint 1.790000e-02

Joint ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
Cons ci ratio: 2.442163e-02	ci left: 5.560419e-01	ci right 5.698398e-01	k: 11259	n:20000
KS ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
C12orf5   20000 perm   4 sec   (5487 perm/sec)   p_kst 7.250000e-03   p_cons 5.629500e-01   p_joint 3.005000e-02

Joint ci ratio: 1.139233e-01	ci left: 3.579979e-02	ci right 4.015694e-02	k: 1138	n:30000
Cons ci ratio: 2.000754e-02	ci left: 5.556624e-01	ci right 5.669257e-01	k: 16839	n:30000
KS ci ratio: 2.682693e-01	ci left: 6.118993e-03	ci right 8.044991e-03	k: 211	n:30000
C12orf5   30000 perm   6 sec   (5194 perm/sec)   p_kst 7.033333e-03   p_cons 5.613000e-01   p_joint 3.793333e-02

Joint ci ratio: 1.276712e-01	ci left: 2.155318e-02	ci right 2.451662e-02	k: 920	n:40000
Cons ci ratio: 1.722629e-02	ci left: 5.592986e-01	ci right 5.690421e-01	k: 22567	n:40000
KS ci ratio: 2.355680e-01	ci left: 6.065168e-03	ci right 7.707648e-03	k: 274	n:40000
C12orf5   40000 perm   8 sec   (5011 perm/sec)   p_kst 6.850000e-03   p_cons 5.641750e-01   p_joint 2.300000e-02

Joint ci ratio: 1.387171e-01	ci left: 1.462856e-02	ci right 1.682818e-02	k: 785	n:50000
Cons ci ratio: 1.537692e-02	ci left: 5.608011e-01	ci right 5.695113e-01	k: 28258	n:50000
KS ci ratio: 2.112411e-01	ci left: 6.117362e-03	ci right 7.580775e-03	k: 341	n:50000
C12orf5   50000 perm   10 sec   (4867 perm/sec)   p_kst 6.820000e-03   p_cons 5.651600e-01   p_joint 1.570000e-02

Joint ci ratio: 1.345455e-01	ci left: 1.301067e-02	ci right 1.490344e-02	k: 836	n:60000
Cons ci ratio: 1.401941e-02	ci left: 5.618059e-01	ci right 5.697544e-01	k: 33947	n:60000
KS ci ratio: 1.903761e-01	ci left: 6.348493e-03	ci right 7.699852e-03	k: 420	n:60000
C12orf5   60000 perm   13 sec   (4744 perm/sec)   p_kst 7.000000e-03   p_cons 5.657833e-01   p_joint 1.393333e-02

Joint ci ratio: 1.168820e-01	ci left: 1.488919e-02	ci right 1.675126e-02	k: 1106	n:70000
Cons ci ratio: 1.296773e-02	ci left: 5.625474e-01	ci right 5.699043e-01	k: 39636	n:70000
KS ci ratio: 1.761038e-01	ci left: 6.409400e-03	ci right 7.660559e-03	k: 491	n:70000
C12orf5   70000 perm   15 sec   (4624 perm/sec)   p_kst 7.014286e-03   p_cons 5.662286e-01   p_joint 1.580000e-02

Joint ci ratio: 1.156302e-01	ci left: 1.334297e-02	ci right 1.499254e-02	k: 1132	n:80000
Cons ci ratio: 1.212137e-02	ci left: 5.631450e-01	ci right 5.700252e-01	k: 45327	n:80000
KS ci ratio: 1.623180e-01	ci left: 6.649799e-03	ci right 7.836358e-03	k: 578	n:80000
C12orf5   80000 perm   18 sec   (4499 perm/sec)   p_kst 7.225000e-03   p_cons 5.665875e-01   p_joint 1.415000e-02

Joint ci ratio: 1.141016e-01	ci left: 1.220534e-02	ci right 1.369296e-02	k: 1164	n:90000
Cons ci ratio: 1.141468e-02	ci left: 5.639220e-01	ci right 5.704070e-01	k: 51045	n:90000
KS ci ratio: 1.521406e-01	ci left: 6.764905e-03	ci right 7.889423e-03	k: 658	n:90000
C12orf5   90000 perm   20 sec   (4399 perm/sec)   p_kst 7.311111e-03   p_cons 5.671667e-01   p_joint 1.293333e-02

Joint ci ratio: 1.084777e-01	ci left: 1.219029e-02	ci right 1.359817e-02	k: 1288	n:100000
Cons ci ratio: 1.082511e-02	ci left: 5.642623e-01	ci right 5.704138e-01	k: 56734	n:100000
KS ci ratio: 1.435672e-01	ci left: 6.868492e-03	ci right 7.940377e-03	k: 739	n:100000
C12orf5   100000 perm   23 sec   (4306 perm/sec)   p_kst 7.390000e-03   p_cons 5.673400e-01   p_joint 1.288000e-02

Joint ci ratio: 1.035738e-01	ci left: 1.218832e-02	ci right 1.352846e-02	k: 1413	n:110000
Cons ci ratio: 1.031799e-02	ci left: 5.645660e-01	ci right 5.704304e-01	k: 62425	n:110000
KS ci ratio: 1.367169e-01	ci left: 6.910787e-03	ci right 7.933624e-03	k: 815	n:110000
C12orf5   110000 perm   26 sec   (4217 perm/sec)   p_kst 7.409091e-03   p_cons 5.675000e-01   p_joint 1.284545e-02

Joint ci ratio: 9.882572e-02	ci left: 1.230169e-02	ci right 1.358868e-02	k: 1552	n:120000
Cons ci ratio: 9.872192e-03	ci left: 5.650164e-01	ci right 5.706303e-01	k: 68139	n:120000
KS ci ratio: 1.309100e-01	ci left: 6.930920e-03	ci right 7.909777e-03	k: 889	n:120000
C12orf5   120000 perm   29 sec   (4124 perm/sec)   p_kst 7.408333e-03   p_cons 5.678250e-01   p_joint 1.293333e-02

Joint ci ratio: 9.453448e-02	ci left: 1.243636e-02	ci right 1.367781e-02	k: 1696	n:130000
Cons ci ratio: 9.476618e-03	ci left: 5.655560e-01	ci right 5.709487e-01	k: 73873	n:130000
KS ci ratio: 1.251978e-01	ci left: 7.015807e-03	ci right 7.960208e-03	k: 972	n:130000
C12orf5   130000 perm   32 sec   (4039 perm/sec)   p_kst 7.476923e-03   p_cons 5.682538e-01   p_joint 1.304615e-02

Joint ci ratio: 8.660880e-02	ci left: 1.379644e-02	ci right 1.505236e-02	k: 2018	n:140000
Cons ci ratio: 9.121212e-03	ci left: 5.662294e-01	ci right 5.714249e-01	k: 79636	n:140000
KS ci ratio: 1.208673e-01	ci left: 7.006212e-03	ci right 7.914367e-03	k: 1043	n:140000
C12orf5   140000 perm   35 sec   (3964 perm/sec)   p_kst 7.450000e-03   p_cons 5.688286e-01   p_joint 1.441429e-02

Joint ci ratio: 8.371555e-02	ci left: 1.380318e-02	ci right 1.501569e-02	k: 2160	n:150000
Cons ci ratio: 8.811369e-03	ci left: 5.663492e-01	ci right 5.713682e-01	k: 85329	n:150000
KS ci ratio: 1.162762e-01	ci left: 7.082541e-03	ci right 7.963323e-03	k: 1127	n:150000
C12orf5   150000 perm   39 sec   (3886 perm/sec)   p_kst 7.513333e-03   p_cons 5.688600e-01   p_joint 1.440000e-02

Joint ci ratio: 8.058093e-02	ci left: 1.398733e-02	ci right 1.516785e-02	k: 2331	n:160000
Cons ci ratio: 8.520992e-03	ci left: 5.670382e-01	ci right 5.718968e-01	k: 91115	n:160000
KS ci ratio: 1.121714e-01	ci left: 7.149898e-03	ci right 8.005591e-03	k: 1211	n:160000
C12orf5   160000 perm   42 sec   (3814 perm/sec)   p_kst 7.568750e-03   p_cons 5.694687e-01   p_joint 1.456875e-02

Joint ci ratio: 7.809108e-02	ci left: 1.403518e-02	ci right 1.518147e-02	k: 2482	n:170000
Cons ci ratio: 8.263079e-03	ci left: 5.673187e-01	ci right 5.720318e-01	k: 96845	n:170000
KS ci ratio: 1.088117e-01	ci left: 7.164023e-03	ci right 7.994079e-03	k: 1287	n:170000
C12orf5   170000 perm   45 sec   (3746 perm/sec)   p_kst 7.570588e-03   p_cons 5.696765e-01   p_joint 1.460000e-02

Joint ci ratio: 7.565846e-02	ci left: 1.413817e-02	ci right 1.525532e-02	k: 2644	n:180000
Cons ci ratio: 8.032435e-03	ci left: 5.672532e-01	ci right 5.718335e-01	k: 102518	n:180000
KS ci ratio: 1.055032e-01	ci left: 7.209377e-03	ci right 8.017713e-03	k: 1369	n:180000
C12orf5   180000 perm   49 sec   (3681 perm/sec)   p_kst 7.605556e-03   p_cons 5.695444e-01   p_joint 1.468889e-02

Joint ci ratio: 7.340004e-02	ci left: 1.424632e-02	ci right 1.533698e-02	k: 2809	n:190000
Cons ci ratio: 7.822771e-03	ci left: 5.670277e-01	ci right 5.714860e-01	k: 108159	n:190000
KS ci ratio: 1.023373e-01	ci left: 7.270816e-03	ci right 8.060106e-03	k: 1455	n:190000
C12orf5   190000 perm   53 sec   (3618 perm/sec)   p_kst 7.657895e-03   p_cons 5.692579e-01   p_joint 1.478421e-02

Joint ci ratio: 7.152796e-02	ci left: 1.426551e-02	ci right 1.532862e-02	k: 2958	n:200000
Cons ci ratio: 7.623653e-03	ci left: 5.671514e-01	ci right 5.714966e-01	k: 113865	n:200000
KS ci ratio: 9.979959e-02	ci left: 7.272796e-03	ci right 8.041577e-03	k: 1530	n:200000
C12orf5   200000 perm   56 sec   (3558 perm/sec)   p_kst 7.650000e-03   p_cons 5.693250e-01   p_joint 1.479000e-02

Outputting figure to mutsig2_images.part000000000019/C12orf5.3_837_200000_0.00765_0.56932_0.01479.png
                gene_name: C12orf5
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.0076 
        ci_ks_bounds_left: 0.0073 
       ci_ks_bounds_right: 0.0080 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 59 percent done.
C12orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
Cons ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
KS ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
C12orf56   10000 perm   2 sec   (5646 perm/sec)   p_kst 5.057000e-01   p_cons 2.743000e-01   p_joint 5.896000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf56.3_1921_10000_0.5057_0.2743_0.5896.png
                gene_name: C12orf56
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 62 percent done.
C12orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.257961e-02	ci left: 5.816898e-01	ci right 6.010569e-01	k: 5914	n:10000
Cons ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
C12orf71   10000 perm   2 sec   (6328 perm/sec)   p_kst 5.094000e-01   p_cons 5.125000e-01   p_joint 5.914000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf71.3_818_10000_0.5094_0.5125_0.5914.png
                gene_name: C12orf71
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 65 percent done.
C12orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
C12orf74   10000 perm   2 sec   (6567 perm/sec)   p_kst 8.170000e-01   p_cons 6.400000e-03   p_joint 7.590000e-02

Joint ci ratio: 1.374079e-01	ci left: 3.640751e-02	ci right 4.182754e-02	k: 781	n:20000
Cons ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
KS ci ratio: 1.340762e-02	ci left: 8.048975e-01	ci right 8.158121e-01	k: 16208	n:20000
C12orf74   20000 perm   4 sec   (5620 perm/sec)   p_kst 8.104000e-01   p_cons 7.650000e-03   p_joint 3.905000e-02

Joint ci ratio: 1.005334e-01	ci left: 4.580345e-02	ci right 5.068451e-02	k: 1446	n:30000
Cons ci ratio: 2.379288e-01	ci left: 7.899689e-03	ci right 1.006368e-02	k: 268	n:30000
KS ci ratio: 1.097567e-02	ci left: 8.051106e-01	ci right 8.140293e-01	k: 24288	n:30000
C12orf74   30000 perm   6 sec   (5220 perm/sec)   p_kst 8.096000e-01   p_cons 8.933333e-03   p_joint 4.820000e-02

Joint ci ratio: 8.370741e-02	ci left: 4.979525e-02	ci right 5.417008e-02	k: 2078	n:40000
Cons ci ratio: 2.048084e-01	ci left: 8.145234e-03	ci right 1.002707e-02	k: 362	n:40000
KS ci ratio: 9.492835e-03	ci left: 8.061206e-01	ci right 8.138344e-01	k: 32400	n:40000
C12orf74   40000 perm   8 sec   (5011 perm/sec)   p_kst 8.100000e-01   p_cons 9.050000e-03   p_joint 5.195000e-02

Joint ci ratio: 8.155962e-02	ci left: 4.235608e-02	ci right 4.597708e-02	k: 2207	n:50000
Cons ci ratio: 1.841619e-01	ci left: 8.152640e-03	ci right 9.825115e-03	k: 448	n:50000
KS ci ratio: 8.549606e-03	ci left: 8.043788e-01	ci right 8.113054e-01	k: 40393	n:50000
C12orf74   50000 perm   10 sec   (4882 perm/sec)   p_kst 8.078600e-01   p_cons 8.960000e-03   p_joint 4.414000e-02

Joint ci ratio: 8.510725e-02	ci left: 3.269472e-02	ci right 3.561723e-02	k: 2048	n:60000
Cons ci ratio: 1.679277e-01	ci left: 8.243851e-03	ci right 9.770876e-03	k: 539	n:60000
KS ci ratio: 7.809115e-03	ci left: 8.045066e-01	ci right 8.108303e-01	k: 48461	n:60000
C12orf74   60000 perm   13 sec   (4766 perm/sec)   p_kst 8.076833e-01   p_cons 8.983333e-03   p_joint 3.413333e-02

Joint ci ratio: 7.635553e-02	ci left: 3.489851e-02	ci right 3.768296e-02	k: 2539	n:70000
Cons ci ratio: 1.539979e-01	ci left: 8.464767e-03	ci right 9.890650e-03	k: 641	n:70000
KS ci ratio: 7.251041e-03	ci left: 8.038267e-01	ci right 8.096907e-01	k: 56474	n:70000
C12orf74   70000 perm   15 sec   (4661 perm/sec)   p_kst 8.067714e-01   p_cons 9.157143e-03   p_joint 3.627143e-02

Joint ci ratio: 7.486193e-02	ci left: 3.189558e-02	ci right 3.438843e-02	k: 2650	n:80000
Cons ci ratio: 1.436292e-01	ci left: 8.562059e-03	ci right 9.898895e-03	k: 737	n:80000
KS ci ratio: 6.770134e-03	ci left: 8.045998e-01	ci right 8.100779e-01	k: 64588	n:80000
C12orf74   80000 perm   18 sec   (4557 perm/sec)   p_kst 8.073500e-01   p_cons 9.212500e-03   p_joint 3.312500e-02

Joint ci ratio: 5.716356e-02	ci left: 4.823435e-02	ci right 5.108366e-02	k: 4468	n:90000
Cons ci ratio: 1.356833e-01	ci left: 8.565074e-03	ci right 9.822422e-03	k: 826	n:90000
KS ci ratio: 6.392399e-03	ci left: 8.042945e-01	ci right 8.094634e-01	k: 72620	n:90000
C12orf74   90000 perm   20 sec   (4463 perm/sec)   p_kst 8.068889e-01   p_cons 9.177778e-03   p_joint 4.964444e-02

Joint ci ratio: 7.065719e-02	ci left: 2.880393e-02	ci right 3.092346e-02	k: 2985	n:100000
Cons ci ratio: 1.285012e-01	ci left: 8.627205e-03	ci right 9.821521e-03	k: 921	n:100000
KS ci ratio: 6.073092e-03	ci left: 8.039774e-01	ci right 8.088848e-01	k: 80644	n:100000
C12orf74   100000 perm   23 sec   (4375 perm/sec)   p_kst 8.064400e-01   p_cons 9.210000e-03   p_joint 2.985000e-02

Joint ci ratio: 5.024304e-02	ci left: 5.111739e-02	ci right 5.376082e-02	k: 5767	n:110000
Cons ci ratio: 1.227780e-01	ci left: 8.617774e-03	ci right 9.753785e-03	k: 1009	n:110000
KS ci ratio: 5.822716e-03	ci left: 8.023447e-01	ci right 8.070392e-01	k: 88517	n:110000
C12orf74   110000 perm   26 sec   (4285 perm/sec)   p_kst 8.047000e-01   p_cons 9.172727e-03   p_joint 5.242727e-02

Joint ci ratio: 4.808940e-02	ci left: 5.120356e-02	ci right 5.373479e-02	k: 6295	n:120000
Cons ci ratio: 1.165840e-01	ci left: 8.788906e-03	ci right 9.885002e-03	k: 1119	n:120000
KS ci ratio: 5.564772e-03	ci left: 8.030146e-01	ci right 8.075040e-01	k: 96632	n:120000
C12orf74   120000 perm   29 sec   (4208 perm/sec)   p_kst 8.052667e-01   p_cons 9.325000e-03   p_joint 5.245833e-02

Joint ci ratio: 4.597091e-02	ci left: 5.175025e-02	ci right 5.419281e-02	k: 6885	n:130000
Cons ci ratio: 1.113789e-01	ci left: 8.912485e-03	ci right 9.971108e-03	k: 1226	n:130000
KS ci ratio: 5.334479e-03	ci left: 8.038089e-01	ci right 8.081159e-01	k: 104776	n:130000
C12orf74   130000 perm   31 sec   (4129 perm/sec)   p_kst 8.059692e-01   p_cons 9.430769e-03   p_joint 5.296154e-02

Joint ci ratio: 4.499718e-02	ci left: 5.026320e-02	ci right 5.258400e-02	k: 7198	n:140000
Cons ci ratio: 1.077972e-01	ci left: 8.852472e-03	ci right 9.868005e-03	k: 1309	n:140000
KS ci ratio: 5.143212e-03	ci left: 8.037179e-01	ci right 8.078694e-01	k: 112812	n:140000
C12orf74   140000 perm   35 sec   (4057 perm/sec)   p_kst 8.058000e-01   p_cons 9.350000e-03   p_joint 5.141429e-02

Joint ci ratio: 4.788844e-02	ci left: 4.173508e-02	ci right 4.378930e-02	k: 6413	n:150000
Cons ci ratio: 1.039766e-01	ci left: 8.898351e-03	ci right 9.880754e-03	k: 1407	n:150000
KS ci ratio: 4.964157e-03	ci left: 8.040833e-01	ci right 8.080915e-01	k: 120914	n:150000
C12orf74   150000 perm   38 sec   (3985 perm/sec)   p_kst 8.060933e-01   p_cons 9.380000e-03   p_joint 4.275333e-02

Joint ci ratio: 4.665202e-02	ci left: 4.127570e-02	ci right 4.325343e-02	k: 6761	n:160000
Cons ci ratio: 1.008060e-01	ci left: 8.890297e-03	ci right 9.840109e-03	k: 1497	n:160000
KS ci ratio: 4.804402e-03	ci left: 8.042859e-01	ci right 8.081655e-01	k: 128997	n:160000
C12orf74   160000 perm   41 sec   (3912 perm/sec)   p_kst 8.062312e-01   p_cons 9.356250e-03   p_joint 4.225625e-02

Joint ci ratio: 4.641313e-02	ci left: 3.933515e-02	ci right 4.120998e-02	k: 6845	n:170000
Cons ci ratio: 9.781555e-02	ci left: 8.900813e-03	ci right 9.821918e-03	k: 1590	n:170000
KS ci ratio: 4.665105e-03	ci left: 8.040649e-01	ci right 8.078305e-01	k: 137012	n:170000
C12orf74   170000 perm   44 sec   (3836 perm/sec)   p_kst 8.059529e-01   p_cons 9.352941e-03   p_joint 4.026471e-02

Outputting figure to mutsig2_images.part000000000019/C12orf74.3_596_170000_0.80595_0.0093529_0.040265.png
                gene_name: C12orf74
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0089 
     ci_cons_bounds_right: 0.0098 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 68 percent done.
C13orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
Cons ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
KS ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
C13orf34   10000 perm   2 sec   (5671 perm/sec)   p_kst 9.650000e-02   p_cons 3.959000e-01   p_joint 1.299000e-01

Joint ci ratio: 5.633580e-02	ci left: 1.893803e-01	ci right 2.004086e-01	k: 3897	n:20000
Cons ci ratio: 3.394141e-02	ci left: 3.932503e-01	ci right 4.068788e-01	k: 8001	n:20000
KS ci ratio: 8.638237e-02	ci left: 8.930339e-02	ci right 9.741528e-02	k: 1866	n:20000
C13orf34   20000 perm   4 sec   (5064 perm/sec)   p_kst 9.330000e-02   p_cons 4.000500e-01   p_joint 1.948500e-01

Outputting figure to mutsig2_images.part000000000019/C13orf34.3_1724_20000_0.0933_0.40005_0.19485.png
                gene_name: C13orf34
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 70 percent done.
C11orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 7.329722e-02	ci left: 2.141824e-01	ci right 2.305796e-01	k: 2223	n:10000
C11orf49   10000 perm   1 sec   (6758 perm/sec)   p_kst 2.223000e-01   p_cons 1.290000e-01   p_joint 4.699000e-01

Joint ci ratio: 2.908902e-02	ci left: 4.689075e-01	ci right 4.827995e-01	k: 9517	n:20000
Cons ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
KS ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
C11orf49   20000 perm   3 sec   (5831 perm/sec)   p_kst 2.240500e-01   p_cons 1.295000e-01   p_joint 4.758500e-01

Outputting figure to mutsig2_images.part000000000019/C11orf49.2_1218_20000_0.22405_0.1295_0.47585.png
                gene_name: C11orf49
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 73 percent done.
C11orf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159885e-03	ci left: 9.437779e-01	ci right 9.525587e-01	k: 9483	n:10000
Cons ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
C11orf61   10000 perm   2 sec   (6130 perm/sec)   p_kst 6.280000e-02   p_cons 6.242000e-01   p_joint 9.483000e-01

Joint ci ratio: 1.377723e-02	ci left: 7.963075e-01	ci right 8.074046e-01	k: 16038	n:20000
Cons ci ratio: 2.124586e-02	ci left: 6.231649e-01	ci right 6.365973e-01	k: 12598	n:20000
KS ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
C11orf61   20000 perm   4 sec   (5331 perm/sec)   p_kst 6.555000e-02   p_cons 6.299000e-01   p_joint 8.019000e-01

Joint ci ratio: 1.077231e-02	ci left: 8.108617e-01	ci right 8.196771e-01	k: 24459	n:30000
Cons ci ratio: 1.724466e-02	ci left: 6.271822e-01	ci right 6.381254e-01	k: 18980	n:30000
KS ci ratio: 8.472587e-02	ci left: 6.377137e-02	ci right 6.944625e-02	k: 1997	n:30000
C11orf61   30000 perm   6 sec   (5068 perm/sec)   p_kst 6.656667e-02   p_cons 6.326667e-01   p_joint 8.153000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf61.2_1540_30000_0.066567_0.63267_0.8153.png
                gene_name: C11orf61
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 76 percent done.
C11orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
Cons ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
C11orf70   10000 perm   1 sec   (6791 perm/sec)   p_kst 6.375000e-01   p_cons 2.758000e-01   p_joint 6.528000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf70.2_714_10000_0.6375_0.2758_0.6528.png
                gene_name: C11orf70
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 78 percent done.
C12orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
Cons ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
KS ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
C12orf34   10000 perm   2 sec   (6275 perm/sec)   p_kst 6.861000e-01   p_cons 3.239000e-01   p_joint 6.071000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf34.2_1367_10000_0.6861_0.3239_0.6071.png
                gene_name: C12orf34
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 81 percent done.
C12orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
Cons ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
KS ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
C12orf4   10000 perm   2 sec   (5988 perm/sec)   p_kst 8.311000e-01   p_cons 3.110000e-01   p_joint 9.191000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf4.2_1711_10000_0.8311_0.311_0.9191.png
                gene_name: C12orf4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 84 percent done.
C12orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
C12orf43   10000 perm   2 sec   (6086 perm/sec)   p_kst 4.684000e-01   p_cons 3.057000e-01   p_joint 4.833000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf43.2_813_10000_0.4684_0.3057_0.4833.png
                gene_name: C12orf43
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 86 percent done.
C12orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
Cons ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
KS ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
C12orf48   10000 perm   2 sec   (6182 perm/sec)   p_kst 6.435000e-01   p_cons 8.196000e-01   p_joint 7.917000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf48.2_1533_10000_0.6435_0.8196_0.7917.png
                gene_name: C12orf48
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 89 percent done.
C12orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
C12orf50   10000 perm   2 sec   (6317 perm/sec)   p_kst 2.632000e-01   p_cons 2.670000e-01   p_joint 9.704000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf50.2_1293_10000_0.2632_0.267_0.9704.png
                gene_name: C12orf50
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
C13orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
Cons ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
KS ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
C13orf28   10000 perm   1 sec   (6740 perm/sec)   p_kst 7.798000e-01   p_cons 4.996000e-01   p_joint 5.126000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf28.2_616_10000_0.7798_0.4996_0.5126.png
                gene_name: C13orf28
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
C13orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
Cons ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
KS ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
C13orf31   10000 perm   2 sec   (6614 perm/sec)   p_kst 4.790000e-01   p_cons 5.483000e-01   p_joint 9.153000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf31.2_1313_10000_0.479_0.5483_0.9153.png
                gene_name: C13orf31
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 97 percent done.
C13orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
Cons ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
KS ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
C13orf33   10000 perm   2 sec   (6659 perm/sec)   p_kst 4.438000e-01   p_cons 2.812000e-01   p_joint 6.262000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf33.2_932_10000_0.4438_0.2812_0.6262.png
                gene_name: C13orf33
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000019
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 19 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 4421757: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000020> was used as the working directory.
Started at Wed Oct 24 17:32:03 2012
Results reported at Wed Oct 24 18:06:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000020.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000020.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 20  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000020.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2331.17 sec.
    Max Memory :      5253 MB
    Max Swap   :      7621 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
20
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 20
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 20: processing genes 1720 - 1809
Calculating significance of each gene.
Using projection method.
1720	C14orf104	9.262583e-01
1721	C14orf105	1
1722	C14orf106	3.821153e-01
1723	C14orf109	1
1724	C14orf115	7.574732e-01
1725	C14orf118	9.242252e-01
1726	C14orf119	1
1727	C14orf126	1
1728	C14orf129	1
1729	C14orf135	9.544054e-01
1730	C14orf138	1
1731	C14orf142	1
1732	C14orf143	1
1733	C14orf145	9.769762e-01
1734	C14orf147	1
1735	C14orf148	7.008892e-01
1736	C14orf149	1.765167e-01
1737	C14orf153	1
1738	C14orf156	1
1739	C14orf159	1
1740	C14orf166	3.722591e-01
1741	C14orf166B	6.193392e-01
1742	C14orf169	8.841228e-01
1743	C14orf174	8.323231e-01
1744	C14orf177	8.211898e-05
1745	C14orf178	2.500118e-01
1746	C14orf179	8.479163e-01
1747	C14orf180	1
1748	C14orf181	1
1749	C14orf182	1
1750	C14orf183	6.699554e-01
1751	C14orf184	1
1752	C14orf2	1
1753	C14orf21	9.928284e-01
1754	C14orf28	4.669439e-02
1755	C14orf37	7.970903e-01
1756	C14orf39	3.629897e-01
1757	C14orf4	7.678783e-01
In gene C14orf43 the following bins exceed PROBCAP:
    LUAD-17-Z004-TP	categ 6	N = 3088    n = 1	mu =   2.01e-07
1758	C14orf43	9.916457e-01
1759	C14orf45	7.814987e-01
1760	C14orf49	9.912552e-01
1761	C14orf50	4.886352e-01
1762	C14orf68	1.601531e-01
1763	C14orf73	3.936399e-01
1764	C14orf79	1
1765	C14orf93	9.251703e-01
1766	C15orf17	1
1767	C15orf2	9.911047e-01
1768	C15orf23	5.589599e-01
1769	C15orf24	4.470935e-01
1770	C15orf26	6.051183e-02
1771	C15orf27	9.415320e-01
1772	C15orf29	4.411924e-01
1773	C15orf32	7.380640e-02
1774	C15orf33	3.275885e-01
1775	C15orf38	1
1776	C15orf39	9.569183e-01
1777	C15orf40	1
1778	C15orf41	1
1779	C15orf42	9.999285e-01
1780	C15orf43	1.081300e-01
1781	C15orf44	1
1782	C15orf48	1.838723e-01
1783	C15orf52	1
1784	C15orf53	1
1785	C15orf54	1
1786	C15orf55	9.979547e-01
1787	C15orf56	1
1788	C15orf57	1
1789	C15orf58	7.602820e-01
1790	C15orf59	1.319587e-01
1791	C15orf60	3.885848e-01
1792	C15orf63	1
1793	C16orf11	3.875035e-01
1794	C16orf13	1
1795	C16orf3	1
1796	C16orf42	1
1797	C16orf45	3.787005e-01
1798	C16orf46	1
1799	C16orf48	7.449380e-01
1800	C16orf5	1
1801	C16orf53	1
1802	C16orf54	1
1803	C16orf55	3.232502e-01
1804	C16orf57	4.662110e-01
1805	C16orf58	4.322974e-01
1806	C16orf59	1
1807	C16orf61	1
1808	C16orf62	9.476218e-01
1809	C16orf63	2.813816e-01
Done

Running MutSig 2:
Scatter job 20: processing genes 1720 - 1809
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C15orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
Cons ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
KS ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
C15orf2   10000 perm   3 sec   (3043 perm/sec)   p_kst 6.709000e-01   p_cons 1.840000e-02   p_joint 9.150000e-02

Joint ci ratio: 7.771605e-02	ci left: 1.084472e-01	ci right 1.172657e-01	k: 2256	n:20000
Cons ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
KS ci ratio: 1.948547e-02	ci left: 6.626803e-01	ci right 6.757705e-01	k: 13385	n:20000
C15orf2   20000 perm   10 sec   (2075 perm/sec)   p_kst 6.692500e-01   p_cons 1.765000e-02   p_joint 1.128000e-01

Joint ci ratio: 7.478422e-02	ci left: 8.075379e-02	ci right 8.706040e-02	k: 2516	n:30000
Cons ci ratio: 1.682762e-01	ci left: 1.627003e-02	ci right 1.929105e-02	k: 532	n:30000
KS ci ratio: 1.596215e-02	ci left: 6.624375e-01	ci right 6.731300e-01	k: 20034	n:30000
C15orf2   30000 perm   14 sec   (2222 perm/sec)   p_kst 6.678000e-01   p_cons 1.773333e-02   p_joint 8.386667e-02

Joint ci ratio: 6.244738e-02	ci left: 8.686775e-02	ci right 9.249198e-02	k: 3586	n:40000
Cons ci ratio: 1.453853e-01	ci left: 1.655093e-02	ci right 1.916973e-02	k: 713	n:40000
KS ci ratio: 1.409409e-02	ci left: 6.544810e-01	ci right 6.637959e-01	k: 26366	n:40000
C15orf2   40000 perm   17 sec   (2300 perm/sec)   p_kst 6.591500e-01   p_cons 1.782500e-02   p_joint 8.965000e-02

Joint ci ratio: 5.141176e-02	ci left: 1.014758e-01	ci right 1.068503e-01	k: 5207	n:50000
Cons ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
KS ci ratio: 1.129149e-02	ci left: 7.027678e-01	ci right 7.107682e-01	k: 35339	n:50000
C15orf2   50000 perm   21 sec   (2335 perm/sec)   p_kst 7.067800e-01   p_cons 1.948000e-02   p_joint 1.041400e-01

Joint ci ratio: 5.275506e-02	ci left: 8.203929e-02	ci right 8.650102e-02	k: 5055	n:60000
Cons ci ratio: 1.130848e-01	ci left: 1.852197e-02	ci right 2.075817e-02	k: 1177	n:60000
KS ci ratio: 1.036151e-02	ci left: 7.009481e-01	ci right 7.082654e-01	k: 42277	n:60000
C15orf2   60000 perm   25 sec   (2356 perm/sec)   p_kst 7.046167e-01   p_cons 1.961667e-02   p_joint 8.425000e-02

Joint ci ratio: 4.628147e-02	ci left: 9.080170e-02	ci right 9.511783e-02	k: 6506	n:70000
Cons ci ratio: 1.045154e-01	ci left: 1.866942e-02	ci right 2.074209e-02	k: 1378	n:70000
KS ci ratio: 9.987667e-03	ci left: 6.841088e-01	ci right 6.909900e-01	k: 48129	n:70000
C15orf2   70000 perm   30 sec   (2367 perm/sec)   p_kst 6.875571e-01   p_cons 1.968571e-02   p_joint 9.294286e-02

Joint ci ratio: 4.720768e-02	ci left: 7.747372e-02	ci right 8.123185e-02	k: 6347	n:80000
Cons ci ratio: 9.776533e-02	ci left: 1.873602e-02	ci right 2.067403e-02	k: 1575	n:80000
KS ci ratio: 9.322121e-03	ci left: 6.852779e-01	ci right 6.917085e-01	k: 55080	n:80000
C15orf2   80000 perm   34 sec   (2369 perm/sec)   p_kst 6.885000e-01   p_cons 1.968750e-02   p_joint 7.933750e-02

Outputting figure to mutsig2_images.part000000000020/C15orf2.39_3475_80000_0.6885_0.019688_0.079338.png
                gene_name: C15orf2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 2 percent done.
C14orf145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
Cons ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
KS ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
C14orf145   10000 perm   2 sec   (4468 perm/sec)   p_kst 1.756000e-01   p_cons 4.880000e-01   p_joint 2.811000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf145.9_3377_10000_0.1756_0.488_0.2811.png
                gene_name: C14orf145
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 5 percent done.
C14orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
Cons ci ratio: 2.818964e-02	ci left: 6.497142e-01	ci right 6.683930e-01	k: 6591	n:10000
KS ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
C14orf49   10000 perm   2 sec   (4698 perm/sec)   p_kst 4.087000e-01   p_cons 6.591000e-01   p_joint 6.795000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf49.9_2996_10000_0.4087_0.6591_0.6795.png
                gene_name: C14orf49
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 7 percent done.
C15orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
Cons ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
KS ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
C15orf42   10000 perm   3 sec   (3799 perm/sec)   p_kst 8.774000e-01   p_cons 4.516000e-01   p_joint 8.492000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf42.8_5821_10000_0.8774_0.4516_0.8492.png
                gene_name: C15orf42
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
C14orf106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
C14orf106   10000 perm   2 sec   (4425 perm/sec)   p_kst 1.550000e-02   p_cons 8.422000e-01   p_joint 9.860000e-02

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 1.236693e-02	ci left: 8.287699e-01	ci right 8.391329e-01	k: 16680	n:20000
KS ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
C14orf106   20000 perm   5 sec   (3969 perm/sec)   p_kst 1.495000e-02   p_cons 8.340000e-01   p_joint 3.675000e-02

Joint ci ratio: 9.970367e-02	ci left: 4.655183e-02	ci right 5.146931e-02	k: 1469	n:30000
Cons ci ratio: 1.012534e-02	ci left: 8.289663e-01	ci right 8.374358e-01	k: 24997	n:30000
KS ci ratio: 1.872352e-01	ci left: 1.305063e-02	ci right 1.577793e-02	k: 431	n:30000
C14orf106   30000 perm   8 sec   (3799 perm/sec)   p_kst 1.436667e-02   p_cons 8.332333e-01   p_joint 4.896667e-02

Joint ci ratio: 1.046714e-01	ci left: 3.209918e-02	ci right 3.566891e-02	k: 1354	n:40000
Cons ci ratio: 8.778464e-03	ci left: 8.292326e-01	ci right 8.365690e-01	k: 33317	n:40000
KS ci ratio: 1.652343e-01	ci left: 1.272761e-02	ci right 1.504376e-02	k: 554	n:40000
C14orf106   40000 perm   11 sec   (3689 perm/sec)   p_kst 1.385000e-02   p_cons 8.329250e-01   p_joint 3.385000e-02

Joint ci ratio: 8.109957e-02	ci left: 4.282674e-02	ci right 4.646636e-02	k: 2231	n:50000
Cons ci ratio: 8.176903e-03	ci left: 8.179336e-01	ci right 8.246691e-01	k: 41066	n:50000
KS ci ratio: 1.480884e-01	ci left: 1.279575e-02	ci right 1.486126e-02	k: 690	n:50000
C14orf106   50000 perm   14 sec   (3603 perm/sec)   p_kst 1.380000e-02   p_cons 8.213200e-01   p_joint 4.462000e-02

Joint ci ratio: 8.241721e-02	ci left: 3.483390e-02	ci right 3.784450e-02	k: 2179	n:60000
Cons ci ratio: 7.171180e-03	ci left: 8.297730e-01	ci right 8.357614e-01	k: 49967	n:60000
KS ci ratio: 1.360367e-01	ci left: 1.272070e-02	ci right 1.459345e-02	k: 818	n:60000
C14orf106   60000 perm   17 sec   (3531 perm/sec)   p_kst 1.363333e-02   p_cons 8.327833e-01   p_joint 3.631667e-02

Joint ci ratio: 6.552341e-02	ci left: 4.704678e-02	ci right 5.024791e-02	k: 3404	n:70000
Cons ci ratio: 6.629615e-03	ci left: 8.304030e-01	ci right 8.359408e-01	k: 58323	n:70000
KS ci ratio: 1.251185e-01	ci left: 1.296269e-02	ci right 1.470653e-02	k: 967	n:70000
C14orf106   70000 perm   20 sec   (3466 perm/sec)   p_kst 1.381429e-02   p_cons 8.331857e-01   p_joint 4.862857e-02

Joint ci ratio: 6.157846e-02	ci left: 4.672593e-02	ci right 4.970694e-02	k: 3856	n:80000
Cons ci ratio: 6.187719e-03	ci left: 8.312021e-01	ci right 8.363737e-01	k: 66704	n:80000
KS ci ratio: 1.180308e-01	ci left: 1.279669e-02	ci right 1.441387e-02	k: 1087	n:80000
C14orf106   80000 perm   24 sec   (3398 perm/sec)   p_kst 1.358750e-02   p_cons 8.338000e-01   p_joint 4.820000e-02

Joint ci ratio: 5.758512e-02	ci left: 4.755485e-02	ci right 5.038542e-02	k: 4406	n:90000
Cons ci ratio: 5.836402e-03	ci left: 8.312287e-01	ci right 8.361053e-01	k: 75031	n:90000
KS ci ratio: 1.083136e-01	ci left: 1.356692e-02	ci right 1.513128e-02	k: 1290	n:90000
C14orf106   90000 perm   27 sec   (3340 perm/sec)   p_kst 1.433333e-02   p_cons 8.336778e-01   p_joint 4.895556e-02

Joint ci ratio: 5.566378e-02	ci left: 4.593324e-02	ci right 4.857310e-02	k: 4724	n:100000
Cons ci ratio: 5.540441e-03	ci left: 8.311764e-01	ci right 8.358042e-01	k: 83350	n:100000
KS ci ratio: 1.035435e-01	ci left: 1.339785e-02	ci right 1.487053e-02	k: 1412	n:100000
C14orf106   100000 perm   30 sec   (3292 perm/sec)   p_kst 1.412000e-02   p_cons 8.335000e-01   p_joint 4.724000e-02

Joint ci ratio: 5.261019e-02	ci left: 4.678004e-02	ci right 4.931659e-02	k: 5284	n:110000
Cons ci ratio: 5.101054e-03	ci left: 8.408182e-01	ci right 8.451273e-01	k: 92728	n:110000
KS ci ratio: 9.899331e-02	ci left: 1.335832e-02	ci right 1.475838e-02	k: 1545	n:110000
C14orf106   110000 perm   34 sec   (3233 perm/sec)   p_kst 1.404545e-02   p_cons 8.429818e-01   p_joint 4.803636e-02

Outputting figure to mutsig2_images.part000000000020/C14orf106.7_3463_110000_0.014045_0.84298_0.048036.png
                gene_name: C14orf106
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.049 

Current progress: 12 percent done.
C14orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
Cons ci ratio: 2.985822e-02	ci left: 6.232646e-01	ci right 6.422580e-01	k: 6328	n:10000
KS ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
C14orf177   10000 perm   2 sec   (6197 perm/sec)   p_kst 4.307000e-01   p_cons 6.328000e-01   p_joint 6.780000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf177.7_386_10000_0.4307_0.6328_0.678.png
                gene_name: C14orf177
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
C15orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
Cons ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
KS ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
C15orf55   10000 perm   2 sec   (4469 perm/sec)   p_kst 2.407000e-01   p_cons 7.534000e-01   p_joint 4.513000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf55.7_3427_10000_0.2407_0.7534_0.4513.png
                gene_name: C15orf55
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 17 percent done.
C14orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
C14orf37   10000 perm   2 sec   (5303 perm/sec)   p_kst 9.342000e-01   p_cons 2.092000e-01   p_joint 6.114000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf37.5_2353_10000_0.9342_0.2092_0.6114.png
                gene_name: C14orf37
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 20 percent done.
C14orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
Cons ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
KS ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
C14orf68   10000 perm   2 sec   (5115 perm/sec)   p_kst 8.712000e-01   p_cons 1.778000e-01   p_joint 6.137000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf68.5_951_10000_0.8712_0.1778_0.6137.png
                gene_name: C14orf68
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 22 percent done.
C14orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
KS ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
C14orf28   10000 perm   2 sec   (5603 perm/sec)   p_kst 3.316000e-01   p_cons 1.450000e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf28.4_949_10000_0.3316_0.145_0.2181.png
                gene_name: C14orf28
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 24 percent done.
C14orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
Cons ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
KS ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
C14orf39   10000 perm   2 sec   (5366 perm/sec)   p_kst 1.694000e-01   p_cons 8.762000e-01   p_joint 2.979000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf39.4_1832_10000_0.1694_0.8762_0.2979.png
                gene_name: C14orf39
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
C15orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
KS ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
C15orf26   10000 perm   2 sec   (5626 perm/sec)   p_kst 3.757000e-01   p_cons 1.230000e-02   p_joint 4.060000e-02

Joint ci ratio: 1.416066e-01	ci left: 3.428157e-02	ci right 3.955417e-02	k: 737	n:20000
Cons ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
KS ci ratio: 3.577709e-02	ci left: 3.683339e-01	ci right 3.818024e-01	k: 7501	n:20000
C15orf26   20000 perm   4 sec   (5058 perm/sec)   p_kst 3.750500e-01   p_cons 1.320000e-02   p_joint 3.685000e-02

Joint ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 2.919729e-02	ci left: 3.698165e-01	ci right 3.808077e-01	k: 11259	n:30000
C15orf26   30000 perm   6 sec   (4877 perm/sec)   p_kst 3.753000e-01   p_cons 1.256667e-02   p_joint 3.673333e-02

Joint ci ratio: 1.028774e-01	ci left: 3.322031e-02	ci right 3.684759e-02	k: 1400	n:40000
Cons ci ratio: 1.712816e-01	ci left: 1.181713e-02	ci right 1.405441e-02	k: 516	n:40000
KS ci ratio: 2.515710e-02	ci left: 3.729454e-01	ci right 3.824723e-01	k: 15108	n:40000
C15orf26   40000 perm   8 sec   (4710 perm/sec)   p_kst 3.777000e-01   p_cons 1.290000e-02   p_joint 3.500000e-02

Joint ci ratio: 1.062532e-01	ci left: 2.509022e-02	ci right 2.792512e-02	k: 1324	n:50000
Cons ci ratio: 1.538335e-01	ci left: 1.183306e-02	ci right 1.382410e-02	k: 640	n:50000
KS ci ratio: 2.252633e-02	ci left: 3.729289e-01	ci right 3.814454e-01	k: 18859	n:50000
C15orf26   50000 perm   11 sec   (4607 perm/sec)   p_kst 3.771800e-01   p_cons 1.280000e-02   p_joint 2.648000e-02

Joint ci ratio: 9.879752e-02	ci left: 2.430211e-02	ci right 2.684406e-02	k: 1533	n:60000
Cons ci ratio: 1.432095e-01	ci left: 1.144946e-02	ci right 1.323151e-02	k: 739	n:60000
KS ci ratio: 2.056581e-02	ci left: 3.732529e-01	ci right 3.810256e-01	k: 22628	n:60000
C15orf26   60000 perm   13 sec   (4470 perm/sec)   p_kst 3.771333e-01   p_cons 1.231667e-02   p_joint 2.555000e-02

Joint ci ratio: 9.391176e-02	ci left: 2.314402e-02	ci right 2.543850e-02	k: 1699	n:70000
Cons ci ratio: 1.313090e-01	ci left: 1.174535e-02	ci right 1.340970e-02	k: 879	n:70000
KS ci ratio: 1.904226e-02	ci left: 3.734934e-01	ci right 3.806882e-01	k: 26396	n:70000
C15orf26   70000 perm   16 sec   (4376 perm/sec)   p_kst 3.770857e-01   p_cons 1.255714e-02   p_joint 2.427143e-02

Joint ci ratio: 8.749764e-02	ci left: 2.340305e-02	ci right 2.555663e-02	k: 1957	n:80000
Cons ci ratio: 1.229966e-01	ci left: 1.176582e-02	ci right 1.331983e-02	k: 1002	n:80000
KS ci ratio: 1.777975e-02	ci left: 3.745883e-01	ci right 3.813206e-01	k: 30236	n:80000
C15orf26   80000 perm   19 sec   (4296 perm/sec)   p_kst 3.779500e-01   p_cons 1.252500e-02   p_joint 2.446250e-02

Joint ci ratio: 7.384987e-02	ci left: 2.923338e-02	ci right 3.148591e-02	k: 2731	n:90000
Cons ci ratio: 1.158261e-01	ci left: 1.183830e-02	ci right 1.330448e-02	k: 1130	n:90000
KS ci ratio: 1.678615e-02	ci left: 3.741317e-01	ci right 3.804762e-01	k: 33957	n:90000
C15orf26   90000 perm   21 sec   (4211 perm/sec)   p_kst 3.773000e-01   p_cons 1.255556e-02   p_joint 3.034444e-02

Joint ci ratio: 7.733415e-02	ci left: 2.408039e-02	ci right 2.602730e-02	k: 2504	n:100000
Cons ci ratio: 1.103576e-01	ci left: 1.177192e-02	ci right 1.315657e-02	k: 1245	n:100000
KS ci ratio: 1.597675e-02	ci left: 3.727668e-01	ci right 3.787804e-01	k: 37577	n:100000
C15orf26   100000 perm   24 sec   (4133 perm/sec)   p_kst 3.757700e-01   p_cons 1.245000e-02   p_joint 2.504000e-02

Joint ci ratio: 6.720678e-02	ci left: 2.899083e-02	ci right 3.101587e-02	k: 3299	n:110000
Cons ci ratio: 1.053231e-01	ci left: 1.178093e-02	ci right 1.309950e-02	k: 1367	n:110000
KS ci ratio: 1.527755e-02	ci left: 3.715479e-01	ci right 3.772769e-01	k: 41185	n:110000
C15orf26   110000 perm   27 sec   (4057 perm/sec)   p_kst 3.744091e-01   p_cons 1.242727e-02   p_joint 2.999091e-02

Joint ci ratio: 6.246534e-02	ci left: 3.078155e-02	ci right 3.277450e-02	k: 3812	n:120000
Cons ci ratio: 1.006129e-01	ci left: 1.186277e-02	ci right 1.312762e-02	k: 1498	n:120000
KS ci ratio: 1.462979e-02	ci left: 3.715858e-01	ci right 3.770703e-01	k: 44919	n:120000
C15orf26   120000 perm   30 sec   (3986 perm/sec)   p_kst 3.743250e-01   p_cons 1.248333e-02   p_joint 3.176667e-02

Joint ci ratio: 5.996794e-02	ci left: 3.086794e-02	ci right 3.278379e-02	k: 4136	n:130000
Cons ci ratio: 9.627385e-02	ci left: 1.198570e-02	ci right 1.320542e-02	k: 1636	n:130000
KS ci ratio: 1.404716e-02	ci left: 3.719832e-01	ci right 3.772531e-01	k: 48700	n:130000
C15orf26   130000 perm   33 sec   (3915 perm/sec)   p_kst 3.746154e-01   p_cons 1.258462e-02   p_joint 3.181538e-02

Outputting figure to mutsig2_images.part000000000020/C15orf26.4_934_130000_0.37462_0.012585_0.031815.png
                gene_name: C15orf26
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 29 percent done.
C15orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
Cons ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
C15orf33   10000 perm   2 sec   (5299 perm/sec)   p_kst 4.185000e-01   p_cons 9.246000e-01   p_joint 5.343000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf33.4_1587_10000_0.4185_0.9246_0.5343.png
                gene_name: C15orf33
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 32 percent done.
C15orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
KS ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
C15orf59   10000 perm   2 sec   (5686 perm/sec)   p_kst 3.080000e-02   p_cons 2.528000e-01   p_joint 4.450000e-02

Joint ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
Cons ci ratio: 4.719777e-02	ci left: 2.503593e-01	ci right 2.625116e-01	k: 5128	n:20000
KS ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
C15orf59   20000 perm   4 sec   (4999 perm/sec)   p_kst 3.245000e-02   p_cons 2.564000e-01   p_joint 7.255000e-02

Joint ci ratio: 8.715782e-02	ci left: 6.040702e-02	ci right 6.594461e-02	k: 1894	n:30000
Cons ci ratio: 3.742570e-02	ci left: 2.627289e-01	ci right 2.727827e-01	k: 8032	n:30000
KS ci ratio: 1.221288e-01	ci left: 3.116896e-02	ci right 3.525542e-02	k: 995	n:30000
C15orf59   30000 perm   6 sec   (4828 perm/sec)   p_kst 3.316667e-02   p_cons 2.677333e-01   p_joint 6.313333e-02

Joint ci ratio: 6.914417e-02	ci left: 7.179758e-02	ci right 7.696441e-02	k: 2974	n:40000
Cons ci ratio: 3.238412e-02	ci left: 2.637386e-01	ci right 2.724451e-01	k: 10723	n:40000
KS ci ratio: 1.060980e-01	ci left: 3.124651e-02	ci right 3.477172e-02	k: 1319	n:40000
C15orf59   40000 perm   8 sec   (4710 perm/sec)   p_kst 3.297500e-02   p_cons 2.680750e-01   p_joint 7.435000e-02

Joint ci ratio: 6.989773e-02	ci left: 5.710771e-02	ci right 6.126365e-02	k: 2958	n:50000
Cons ci ratio: 2.887988e-02	ci left: 2.653555e-01	ci right 2.731513e-01	k: 13462	n:50000
KS ci ratio: 9.454223e-02	ci left: 3.166633e-02	ci right 3.482817e-02	k: 1661	n:50000
C15orf59   50000 perm   11 sec   (4607 perm/sec)   p_kst 3.322000e-02   p_cons 2.692400e-01   p_joint 5.916000e-02

Outputting figure to mutsig2_images.part000000000020/C15orf59.4_890_50000_0.03322_0.26924_0.05916.png
                gene_name: C15orf59
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 34 percent done.
C16orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 2.972988e-02	ci left: 6.252749e-01	ci right 6.442466e-01	k: 6348	n:10000
C16orf62   10000 perm   2 sec   (4800 perm/sec)   p_kst 6.348000e-01   p_cons 2.850000e-02   p_joint 1.378000e-01

Joint ci ratio: 5.922121e-02	ci left: 1.743514e-01	ci right 1.850419e-01	k: 3593	n:20000
Cons ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
KS ci ratio: 1.974348e-02	ci left: 6.568026e-01	ci right 6.699499e-01	k: 13268	n:20000
C16orf62   20000 perm   5 sec   (4402 perm/sec)   p_kst 6.634000e-01   p_cons 3.025000e-02   p_joint 1.796500e-01

Joint ci ratio: 4.951703e-02	ci left: 1.685039e-01	ci right 1.770929e-01	k: 5183	n:30000
Cons ci ratio: 1.374380e-01	ci left: 2.458292e-02	ci right 2.824291e-02	k: 791	n:30000
KS ci ratio: 1.612069e-02	ci left: 6.580204e-01	ci right 6.687479e-01	k: 19902	n:30000
C16orf62   30000 perm   7 sec   (4229 perm/sec)   p_kst 6.634000e-01   p_cons 2.636667e-02   p_joint 1.727667e-01

Joint ci ratio: 5.243922e-02	ci left: 1.193514e-01	ci right 1.258035e-01	k: 4902	n:40000
Cons ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
KS ci ratio: 1.398056e-02	ci left: 6.581178e-01	ci right 6.674085e-01	k: 26511	n:40000
C16orf62   40000 perm   10 sec   (4116 perm/sec)   p_kst 6.627750e-01   p_cons 2.650000e-02   p_joint 1.225500e-01

Joint ci ratio: 3.424352e-02	ci left: 2.040917e-01	ci right 2.112223e-01	k: 10382	n:50000
Cons ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
KS ci ratio: 1.249499e-02	ci left: 6.589578e-01	ci right 6.672633e-01	k: 33156	n:50000
C16orf62   50000 perm   12 sec   (4013 perm/sec)   p_kst 6.631200e-01   p_cons 3.066000e-02   p_joint 2.076400e-01

Outputting figure to mutsig2_images.part000000000020/C16orf62.4_3016_50000_0.66312_0.03066_0.20764.png
                gene_name: C16orf62
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
C14orf115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
Cons ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
KS ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
C14orf115   10000 perm   2 sec   (5600 perm/sec)   p_kst 4.703000e-01   p_cons 7.490000e-01   p_joint 9.732000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf115.3_2113_10000_0.4703_0.749_0.9732.png
                gene_name: C14orf115
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 39 percent done.
C14orf149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
C14orf149   10000 perm   2 sec   (5963 perm/sec)   p_kst 1.710000e-01   p_cons 5.538000e-01   p_joint 3.404000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf149.3_1085_10000_0.171_0.5538_0.3404.png
                gene_name: C14orf149
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
C15orf32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
C15orf32   10000 perm   2 sec   (6594 perm/sec)   p_kst 7.987000e-01   p_cons 4.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf32.3_549_10000_0.7987_0.483_1.png
                gene_name: C15orf32
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
C15orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
KS ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
C15orf39   10000 perm   2 sec   (4925 perm/sec)   p_kst 7.158000e-01   p_cons 3.153000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf39.3_3152_10000_0.7158_0.3153_0.8854.png
                gene_name: C15orf39
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 46 percent done.
C15orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
Cons ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
KS ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
C15orf43   10000 perm   2 sec   (6639 perm/sec)   p_kst 2.616000e-01   p_cons 2.870000e-01   p_joint 2.324000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf43.3_691_10000_0.2616_0.287_0.2324.png
                gene_name: C15orf43
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 49 percent done.
C14orf135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
Cons ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
KS ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
C14orf135   10000 perm   2 sec   (5357 perm/sec)   p_kst 2.512000e-01   p_cons 8.939000e-01   p_joint 7.811000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf135.2_2853_10000_0.2512_0.8939_0.7811.png
                gene_name: C14orf135
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 51 percent done.
C14orf148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
C14orf148   10000 perm   2 sec   (6455 perm/sec)   p_kst 6.408000e-01   p_cons 1.457000e-01   p_joint 1.337000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf148.2_1173_10000_0.6408_0.1457_0.1337.png
                gene_name: C14orf148
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 54 percent done.
C14orf166
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
Cons ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
KS ci ratio: 1.357268e-02	ci left: 8.867766e-01	ci right 8.989934e-01	k: 8930	n:10000
C14orf166   10000 perm   2 sec   (6430 perm/sec)   p_kst 8.930000e-01   p_cons 1.822000e-01   p_joint 9.345000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf166.2_767_10000_0.893_0.1822_0.9345.png
                gene_name: C14orf166
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 56 percent done.
C14orf166B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
KS ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
C14orf166B   10000 perm   2 sec   (5989 perm/sec)   p_kst 8.966000e-01   p_cons 3.556000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf166B.2_1523_10000_0.8966_0.3556_1.png
                gene_name: C14orf166B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
C14orf174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
C14orf174   10000 perm   2 sec   (5954 perm/sec)   p_kst 3.952000e-01   p_cons 4.535000e-01   p_joint 4.893000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf174.2_2037_10000_0.3952_0.4535_0.4893.png
                gene_name: C14orf174
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 61 percent done.
C14orf179
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
Cons ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
KS ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
C14orf179   10000 perm   1 sec   (7009 perm/sec)   p_kst 7.670000e-02   p_cons 2.218000e-01   p_joint 9.670000e-02

Joint ci ratio: 5.730544e-02	ci left: 1.841384e-01	ci right 1.950520e-01	k: 3791	n:20000
Cons ci ratio: 5.166524e-02	ci left: 2.176924e-01	ci right 2.292881e-01	k: 4469	n:20000
KS ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
C14orf179   20000 perm   3 sec   (6206 perm/sec)   p_kst 7.640000e-02   p_cons 2.234500e-01   p_joint 1.895500e-01

Outputting figure to mutsig2_images.part000000000020/C14orf179.2_762_20000_0.0764_0.22345_0.18955.png
                gene_name: C14orf179
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 63 percent done.
C14orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
Cons ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
KS ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
C14orf4   10000 perm   2 sec   (5651 perm/sec)   p_kst 8.020000e-01   p_cons 8.151000e-01   p_joint 8.784000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf4.2_2395_10000_0.802_0.8151_0.8784.png
                gene_name: C14orf4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 66 percent done.
C14orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
KS ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
C14orf43   10000 perm   2 sec   (5115 perm/sec)   p_kst 7.528000e-01   p_cons 5.610000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf43.2_3182_10000_0.7528_0.561_1.png
                gene_name: C14orf43
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C14orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
C14orf50   10000 perm   2 sec   (6326 perm/sec)   p_kst 2.641000e-01   p_cons 8.251000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf50.2_1317_10000_0.2641_0.8251_1.png
                gene_name: C14orf50
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C14orf73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
C14orf73   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.200000e-02   p_cons 6.380000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
Cons ci ratio: 9.815838e-02	ci left: 7.021377e-02	ci right 7.751070e-02	k: 1476	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
C14orf73   20000 perm   4 sec   (4992 perm/sec)   p_kst 3.115000e-02   p_cons 7.380000e-02   p_joint 2.555000e-02

Joint ci ratio: 1.095481e-01	ci left: 3.868669e-02	ci right 4.320276e-02	k: 1227	n:30000
Cons ci ratio: 7.969111e-02	ci left: 7.165145e-02	ci right 7.763124e-02	k: 2238	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
C14orf73   30000 perm   6 sec   (4820 perm/sec)   p_kst 3.066667e-02   p_cons 7.460000e-02   p_joint 4.090000e-02

Joint ci ratio: 9.407579e-02	ci left: 3.963964e-02	ci right 4.357726e-02	k: 1663	n:40000
Cons ci ratio: 6.930790e-02	ci left: 7.147778e-02	ci right 7.663426e-02	k: 2961	n:40000
KS ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
C14orf73   40000 perm   9 sec   (4690 perm/sec)   p_kst 3.057500e-02   p_cons 7.402500e-02   p_joint 4.157500e-02

Joint ci ratio: 6.561819e-02	ci left: 6.442979e-02	ci right 6.882069e-02	k: 3330	n:50000
Cons ci ratio: 6.188727e-02	ci left: 7.197658e-02	ci right 7.659299e-02	k: 3713	n:50000
KS ci ratio: 9.752579e-02	ci left: 2.977147e-02	ci right 3.284327e-02	k: 1564	n:50000
C14orf73   50000 perm   11 sec   (4572 perm/sec)   p_kst 3.128000e-02   p_cons 7.426000e-02   p_joint 6.660000e-02

Outputting figure to mutsig2_images.part000000000020/C14orf73.2_2213_50000_0.03128_0.07426_0.0666.png
                gene_name: C14orf73
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 73 percent done.
C15orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
Cons ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
KS ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
C15orf23   10000 perm   2 sec   (6277 perm/sec)   p_kst 2.440000e-01   p_cons 6.597000e-01   p_joint 5.688000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf23.2_1030_10000_0.244_0.6597_0.5688.png
                gene_name: C15orf23
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 76 percent done.
C15orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
KS ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
C15orf24   10000 perm   2 sec   (6519 perm/sec)   p_kst 6.824000e-01   p_cons 3.404000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf24.2_749_10000_0.6824_0.3404_1.png
                gene_name: C15orf24
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
C15orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
C15orf29   10000 perm   2 sec   (6497 perm/sec)   p_kst 8.943000e-01   p_cons 6.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf29.2_951_10000_0.8943_0.6284_1.png
                gene_name: C15orf29
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
C15orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
Cons ci ratio: 7.674665e-02	ci left: 1.988982e-01	ci right 2.148729e-01	k: 2068	n:10000
KS ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
C15orf52   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.643000e-01   p_cons 2.068000e-01   p_joint 4.324000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf52.2_1649_10000_0.4643_0.2068_0.4324.png
                gene_name: C15orf52
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
C15orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
C15orf58   10000 perm   2 sec   (6276 perm/sec)   p_kst 3.300000e-01   p_cons 6.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf58.2_1162_10000_0.33_0.6685_1.png
                gene_name: C15orf58
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
C15orf60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
Cons ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
KS ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
C15orf60   10000 perm   2 sec   (6565 perm/sec)   p_kst 8.780000e-01   p_cons 5.620000e-02   p_joint 2.814000e-01

Joint ci ratio: 6.934809e-02	ci left: 1.329523e-01	ci right 1.425533e-01	k: 2754	n:20000
Cons ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
KS ci ratio: 1.015916e-02	ci left: 8.770419e-01	ci right 8.860469e-01	k: 17632	n:20000
C15orf60   20000 perm   3 sec   (5770 perm/sec)   p_kst 8.816000e-01   p_cons 5.455000e-02   p_joint 1.377000e-01

Joint ci ratio: 6.712742e-02	ci left: 9.863010e-02	ci right 1.055138e-01	k: 3061	n:30000
Cons ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
KS ci ratio: 8.339579e-03	ci left: 8.767421e-01	ci right 8.841174e-01	k: 26414	n:30000
C15orf60   30000 perm   5 sec   (5480 perm/sec)   p_kst 8.804667e-01   p_cons 5.550000e-02   p_joint 1.020333e-01

Outputting figure to mutsig2_images.part000000000020/C15orf60.2_825_30000_0.88047_0.0555_0.10203.png
                gene_name: C15orf60
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 88 percent done.
C16orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
C16orf11   10000 perm   2 sec   (6134 perm/sec)   p_kst 1.400000e-03   p_cons 2.547000e-01   p_joint 5.800000e-03

Joint ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
Cons ci ratio: 4.719777e-02	ci left: 2.503593e-01	ci right 2.625116e-01	k: 5128	n:20000
KS ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
C16orf11   20000 perm   4 sec   (5445 perm/sec)   p_kst 1.150000e-03   p_cons 2.564000e-01   p_joint 1.400000e-03

Joint ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
Cons ci ratio: 3.858919e-02	ci left: 2.509693e-01	ci right 2.608780e-01	k: 7677	n:30000
KS ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
C16orf11   30000 perm   6 sec   (5158 perm/sec)   p_kst 9.666667e-04   p_cons 2.559000e-01   p_joint 8.666667e-04

Joint ci ratio: 9.505257e-01	ci left: 2.286513e-04	ci right 6.494939e-04	k: 16	n:40000
Cons ci ratio: 3.348153e-02	ci left: 2.509329e-01	ci right 2.595026e-01	k: 10208	n:40000
KS ci ratio: 6.045440e-01	ci left: 7.356550e-04	ci right 1.390274e-03	k: 41	n:40000
C16orf11   40000 perm   8 sec   (4963 perm/sec)   p_kst 1.025000e-03   p_cons 2.552000e-01   p_joint 4.000000e-04

Joint ci ratio: 7.405955e-01	ci left: 3.558926e-04	ci right 7.855751e-04	k: 27	n:50000
Cons ci ratio: 3.100576e-02	ci left: 2.384698e-01	ci right 2.460002e-01	k: 12111	n:50000
KS ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
C16orf11   50000 perm   10 sec   (4820 perm/sec)   p_kst 9.600000e-04   p_cons 2.422200e-01   p_joint 5.400000e-04

Joint ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
Cons ci ratio: 2.842740e-02	ci left: 2.372172e-01	ci right 2.440746e-01	k: 14438	n:60000
KS ci ratio: 4.975791e-01	ci left: 7.777559e-04	ci right 1.305762e-03	k: 61	n:60000
C16orf11   60000 perm   13 sec   (4696 perm/sec)   p_kst 1.016667e-03   p_cons 2.406333e-01   p_joint 4.000000e-04

Joint ci ratio: 5.976065e-01	ci left: 4.324604e-04	ci right 8.109401e-04	k: 42	n:70000
Cons ci ratio: 2.636453e-02	ci left: 2.368399e-01	ci right 2.431817e-01	k: 16800	n:70000
KS ci ratio: 4.523968e-01	ci left: 8.301729e-04	ci right 1.326967e-03	k: 74	n:70000
C16orf11   70000 perm   15 sec   (4575 perm/sec)   p_kst 1.057143e-03   p_cons 2.400000e-01   p_joint 6.000000e-04

Joint ci ratio: 3.804894e-01	ci left: 1.073617e-03	ci right 1.588642e-03	k: 105	n:80000
Cons ci ratio: 2.380499e-02	ci left: 2.501272e-01	ci right 2.561657e-01	k: 20251	n:80000
KS ci ratio: 4.200369e-01	ci left: 8.599484e-04	ci right 1.327449e-03	k: 86	n:80000
C16orf11   80000 perm   18 sec   (4466 perm/sec)   p_kst 1.075000e-03   p_cons 2.531375e-01   p_joint 1.312500e-03

Joint ci ratio: 3.823275e-01	ci left: 9.442672e-04	ci right 1.399978e-03	k: 104	n:90000
Cons ci ratio: 2.242017e-02	ci left: 2.506936e-01	ci right 2.563890e-01	k: 22818	n:90000
KS ci ratio: 3.998677e-01	ci left: 8.540888e-04	ci right 1.290210e-03	k: 95	n:90000
C16orf11   90000 perm   21 sec   (4375 perm/sec)   p_kst 1.055556e-03   p_cons 2.535333e-01   p_joint 1.155556e-03

Joint ci ratio: 2.134929e-01	ci left: 3.001340e-03	ci right 3.727937e-03	k: 335	n:100000
Cons ci ratio: 2.126653e-02	ci left: 2.508957e-01	ci right 2.562986e-01	k: 25359	n:100000
KS ci ratio: 3.653298e-01	ci left: 9.404486e-04	ci right 1.369331e-03	k: 114	n:100000
C16orf11   100000 perm   23 sec   (4286 perm/sec)   p_kst 1.140000e-03   p_cons 2.535900e-01   p_joint 3.350000e-03

Joint ci ratio: 2.728622e-01	ci left: 1.617432e-03	ci right 2.136668e-03	k: 205	n:110000
Cons ci ratio: 2.030561e-02	ci left: 2.504873e-01	ci right 2.556348e-01	k: 27836	n:110000
KS ci ratio: 3.504146e-01	ci left: 9.376918e-04	ci right 1.343894e-03	k: 124	n:110000
C16orf11   110000 perm   26 sec   (4201 perm/sec)   p_kst 1.127273e-03   p_cons 2.530545e-01   p_joint 1.863636e-03

Joint ci ratio: 2.689877e-01	ci left: 1.529240e-03	ci right 2.012016e-03	k: 211	n:120000
Cons ci ratio: 1.943756e-02	ci left: 2.506667e-01	ci right 2.555952e-01	k: 30375	n:120000
KS ci ratio: 3.322961e-01	ci left: 9.662258e-04	ci right 1.358523e-03	k: 138	n:120000
C16orf11   120000 perm   29 sec   (4102 perm/sec)   p_kst 1.150000e-03   p_cons 2.531250e-01   p_joint 1.758333e-03

Joint ci ratio: 2.560267e-01	ci left: 1.569712e-03	ci right 2.037575e-03	k: 233	n:130000
Cons ci ratio: 1.865388e-02	ci left: 2.511906e-01	ci right 2.559281e-01	k: 32962	n:130000
KS ci ratio: 3.276253e-01	ci left: 9.201174e-04	ci right 1.287336e-03	k: 142	n:130000
C16orf11   130000 perm   32 sec   (4027 perm/sec)   p_kst 1.092308e-03   p_cons 2.535538e-01   p_joint 1.792308e-03

Joint ci ratio: 2.457386e-01	ci left: 1.591470e-03	ci right 2.043849e-03	k: 253	n:140000
Cons ci ratio: 1.796740e-02	ci left: 2.514436e-01	ci right 2.560094e-01	k: 35521	n:140000
KS ci ratio: 3.167389e-01	ci left: 9.200485e-04	ci right 1.272568e-03	k: 152	n:140000
C16orf11   140000 perm   35 sec   (3960 perm/sec)   p_kst 1.085714e-03   p_cons 2.537214e-01   p_joint 1.807143e-03

Joint ci ratio: 2.970010e-01	ci left: 9.879486e-04	ci right 1.338459e-03	k: 173	n:150000
Cons ci ratio: 1.738028e-02	ci left: 2.510408e-01	ci right 2.554488e-01	k: 37986	n:150000
KS ci ratio: 3.068702e-01	ci left: 9.201636e-04	ci right 1.259596e-03	k: 162	n:150000
C16orf11   150000 perm   39 sec   (3888 perm/sec)   p_kst 1.080000e-03   p_cons 2.532400e-01   p_joint 1.153333e-03

Joint ci ratio: 2.888191e-01	ci left: 9.841104e-04	ci right 1.321884e-03	k: 183	n:160000
Cons ci ratio: 1.683408e-02	ci left: 2.509834e-01	ci right 2.552505e-01	k: 40498	n:160000
KS ci ratio: 2.961611e-01	ci left: 9.319826e-04	ci right 1.261526e-03	k: 174	n:160000
C16orf11   160000 perm   42 sec   (3816 perm/sec)   p_kst 1.087500e-03   p_cons 2.531125e-01   p_joint 1.143750e-03

Joint ci ratio: 2.834810e-01	ci left: 9.644418e-04	ci right 1.288252e-03	k: 190	n:170000
Cons ci ratio: 1.632642e-02	ci left: 2.511635e-01	ci right 2.553037e-01	k: 43049	n:170000
KS ci ratio: 2.912153e-01	ci left: 9.098528e-04	ci right 1.225208e-03	k: 180	n:170000
C16orf11   170000 perm   45 sec   (3741 perm/sec)   p_kst 1.058824e-03   p_cons 2.532294e-01   p_joint 1.117647e-03

Joint ci ratio: 2.172455e-01	ci left: 1.609466e-03	ci right 2.006854e-03	k: 324	n:180000
Cons ci ratio: 1.585487e-02	ci left: 2.514971e-01	ci right 2.555219e-01	k: 45631	n:180000
KS ci ratio: 2.791348e-01	ci left: 9.418421e-04	ci right 1.252364e-03	k: 196	n:180000
C16orf11   180000 perm   49 sec   (3683 perm/sec)   p_kst 1.088889e-03   p_cons 2.535056e-01   p_joint 1.800000e-03

Joint ci ratio: 1.532550e-01	ci left: 3.168537e-03	ci right 3.699423e-03	k: 651	n:190000
Cons ci ratio: 1.543395e-02	ci left: 2.515031e-01	ci right 2.554202e-01	k: 48157	n:190000
KS ci ratio: 2.716536e-01	ci left: 9.461695e-04	ci right 1.248332e-03	k: 207	n:190000
C16orf11   190000 perm   52 sec   (3625 perm/sec)   p_kst 1.089474e-03   p_cons 2.534579e-01   p_joint 3.426316e-03

Joint ci ratio: 1.499584e-01	ci left: 3.149608e-03	ci right 3.664951e-03	k: 680	n:200000
Cons ci ratio: 1.503931e-02	ci left: 2.516494e-01	ci right 2.554677e-01	k: 50711	n:200000
KS ci ratio: 2.611856e-01	ci left: 9.781883e-04	ci right 1.276574e-03	k: 224	n:200000
C16orf11   200000 perm   56 sec   (3569 perm/sec)   p_kst 1.120000e-03   p_cons 2.535550e-01   p_joint 3.400000e-03

Joint ci ratio: 1.464524e-01	ci left: 3.150942e-03	ci right 3.653396e-03	k: 713	n:210000
Cons ci ratio: 1.466756e-02	ci left: 2.519350e-01	ci right 2.556623e-01	k: 53297	n:210000
KS ci ratio: 2.523639e-01	ci left: 1.002898e-03	ci right 1.296865e-03	k: 240	n:210000
C16orf11   210000 perm   60 sec   (3515 perm/sec)   p_kst 1.142857e-03   p_cons 2.537952e-01   p_joint 3.395238e-03

Joint ci ratio: 1.432775e-01	ci left: 3.147900e-03	ci right 3.638056e-03	k: 745	n:220000
Cons ci ratio: 1.432277e-02	ci left: 2.521775e-01	ci right 2.558199e-01	k: 55879	n:220000
KS ci ratio: 2.472865e-01	ci left: 9.999205e-04	ci right 1.286211e-03	k: 250	n:220000
C16orf11   220000 perm   64 sec   (3463 perm/sec)   p_kst 1.136364e-03   p_cons 2.539955e-01   p_joint 3.386364e-03

Joint ci ratio: 1.403006e-01	ci left: 3.145229e-03	ci right 3.623943e-03	k: 777	n:230000
Cons ci ratio: 1.401228e-02	ci left: 2.521005e-01	ci right 2.556622e-01	k: 58392	n:230000
KS ci ratio: 2.393120e-01	ci left: 1.025856e-03	ci right 1.308696e-03	k: 267	n:230000
C16orf11   230000 perm   68 sec   (3405 perm/sec)   p_kst 1.160870e-03   p_cons 2.538783e-01   p_joint 3.378261e-03

Joint ci ratio: 1.393258e-01	ci left: 3.058398e-03	ci right 3.520393e-03	k: 788	n:240000
Cons ci ratio: 1.372312e-02	ci left: 2.519767e-01	ci right 2.554626e-01	k: 60892	n:240000
KS ci ratio: 2.337102e-01	ci left: 1.034069e-03	ci right 1.311537e-03	k: 280	n:240000
C16orf11   240000 perm   72 sec   (3355 perm/sec)   p_kst 1.166667e-03   p_cons 2.537167e-01   p_joint 3.283333e-03

Joint ci ratio: 1.378531e-01	ci left: 3.001698e-03	ci right 3.449941e-03	k: 805	n:250000
Cons ci ratio: 1.344801e-02	ci left: 2.519513e-01	ci right 2.553664e-01	k: 63414	n:250000
KS ci ratio: 2.296602e-01	ci left: 1.030385e-03	ci right 1.301393e-03	k: 290	n:250000
C16orf11   250000 perm   76 sec   (3304 perm/sec)   p_kst 1.160000e-03   p_cons 2.536560e-01   p_joint 3.220000e-03

Joint ci ratio: 1.410574e-01	ci left: 2.752592e-03	ci right 3.173993e-03	k: 769	n:260000
Cons ci ratio: 1.365726e-02	ci left: 2.389733e-01	ci right 2.422633e-01	k: 62560	n:260000
KS ci ratio: 2.269489e-01	ci left: 1.016137e-03	ci right 1.279801e-03	k: 297	n:260000
C16orf11   260000 perm   80 sec   (3260 perm/sec)   p_kst 1.142308e-03   p_cons 2.406154e-01   p_joint 2.957692e-03

Joint ci ratio: 1.383005e-01	ci left: 2.761448e-03	ci right 3.175261e-03	k: 800	n:270000
Cons ci ratio: 1.340131e-02	ci left: 2.390219e-01	ci right 2.422504e-01	k: 64971	n:270000
KS ci ratio: 2.207377e-01	ci left: 1.037937e-03	ci right 1.298886e-03	k: 314	n:270000
C16orf11   270000 perm   84 sec   (3215 perm/sec)   p_kst 1.162963e-03   p_cons 2.406333e-01   p_joint 2.962963e-03

Joint ci ratio: 1.767516e-01	ci left: 1.598579e-03	ci right 1.911878e-03	k: 490	n:280000
Cons ci ratio: 1.316078e-02	ci left: 2.390248e-01	ci right 2.421949e-01	k: 67370	n:280000
KS ci ratio: 2.183270e-01	ci left: 1.024492e-03	ci right 1.278871e-03	k: 321	n:280000
C16orf11   280000 perm   88 sec   (3171 perm/sec)   p_kst 1.146429e-03   p_cons 2.406071e-01   p_joint 1.750000e-03

Joint ci ratio: 1.748064e-01	ci left: 1.579717e-03	ci right 1.885551e-03	k: 501	n:290000
Cons ci ratio: 1.293274e-02	ci left: 2.390279e-01	ci right 2.421428e-01	k: 69769	n:290000
KS ci ratio: 2.143689e-01	ci left: 1.028303e-03	ci right 1.278390e-03	k: 333	n:290000
C16orf11   290000 perm   93 sec   (3128 perm/sec)   p_kst 1.148276e-03   p_cons 2.405828e-01   p_joint 1.727586e-03

Joint ci ratio: 1.773054e-01	ci left: 1.482443e-03	ci right 1.773987e-03	k: 487	n:300000
Cons ci ratio: 1.271072e-02	ci left: 2.391877e-01	ci right 2.422507e-01	k: 72215	n:300000
KS ci ratio: 2.103145e-01	ci left: 1.035055e-03	ci right 1.281411e-03	k: 346	n:300000
C16orf11   300000 perm   97 sec   (3087 perm/sec)   p_kst 1.153333e-03   p_cons 2.407167e-01   p_joint 1.623333e-03

Joint ci ratio: 1.753417e-01	ci left: 1.468539e-03	ci right 1.753811e-03	k: 498	n:310000
Cons ci ratio: 1.251299e-02	ci left: 2.389513e-01	ci right 2.419633e-01	k: 74541	n:310000
KS ci ratio: 2.085214e-01	ci left: 1.020005e-03	ci right 1.260444e-03	k: 352	n:310000
C16orf11   310000 perm   102 sec   (3046 perm/sec)   p_kst 1.135484e-03   p_cons 2.404548e-01   p_joint 1.606452e-03

Joint ci ratio: 1.720952e-01	ci left: 1.479441e-03	ci right 1.760958e-03	k: 517	n:320000
Cons ci ratio: 1.231167e-02	ci left: 2.391011e-01	ci right 2.420661e-01	k: 76986	n:320000
KS ci ratio: 2.045046e-01	ci left: 1.029619e-03	ci right 1.267064e-03	k: 366	n:320000
C16orf11   320000 perm   106 sec   (3006 perm/sec)   p_kst 1.143750e-03   p_cons 2.405812e-01   p_joint 1.615625e-03

Joint ci ratio: 1.701369e-01	ci left: 1.469415e-03	ci right 1.745516e-03	k: 529	n:330000
Cons ci ratio: 1.212549e-02	ci left: 2.390698e-01	ci right 2.419893e-01	k: 79374	n:330000
KS ci ratio: 2.009756e-01	ci left: 1.035813e-03	ci right 1.270059e-03	k: 379	n:330000
C16orf11   330000 perm   111 sec   (2967 perm/sec)   p_kst 1.148485e-03   p_cons 2.405273e-01   p_joint 1.603030e-03

Joint ci ratio: 1.670139e-01	ci left: 1.482540e-03	ci right 1.755479e-03	k: 549	n:340000
Cons ci ratio: 1.194731e-02	ci left: 2.390466e-01	ci right 2.419226e-01	k: 81764	n:340000
KS ci ratio: 1.976232e-01	ci left: 1.041675e-03	ci right 1.272844e-03	k: 392	n:340000
C16orf11   340000 perm   116 sec   (2930 perm/sec)   p_kst 1.152941e-03   p_cons 2.404824e-01   p_joint 1.614706e-03

Joint ci ratio: 1.630569e-01	ci left: 1.514141e-03	ci right 1.785646e-03	k: 576	n:350000
Cons ci ratio: 1.177152e-02	ci left: 2.391875e-01	ci right 2.420225e-01	k: 84211	n:350000
KS ci ratio: 1.937180e-01	ci left: 1.055389e-03	ci right 1.284427e-03	k: 408	n:350000
C16orf11   350000 perm   121 sec   (2893 perm/sec)   p_kst 1.165714e-03   p_cons 2.406029e-01   p_joint 1.645714e-03

Joint ci ratio: 1.612513e-01	ci left: 1.506726e-03	ci right 1.773620e-03	k: 589	n:360000
Cons ci ratio: 1.161120e-02	ci left: 2.390713e-01	ci right 2.418662e-01	k: 86568	n:360000
KS ci ratio: 1.911645e-01	ci left: 1.055156e-03	ci right 1.280775e-03	k: 419	n:360000
C16orf11   360000 perm   126 sec   (2858 perm/sec)   p_kst 1.163889e-03   p_cons 2.404667e-01   p_joint 1.636111e-03

Joint ci ratio: 1.583253e-01	ci left: 1.523087e-03	ci right 1.787518e-03	k: 611	n:370000
Cons ci ratio: 1.144811e-02	ci left: 2.392530e-01	ci right 2.420105e-01	k: 89033	n:370000
KS ci ratio: 1.884907e-01	ci left: 1.057529e-03	ci right 1.280131e-03	k: 431	n:370000
C16orf11   370000 perm   131 sec   (2823 perm/sec)   p_kst 1.164865e-03   p_cons 2.406297e-01   p_joint 1.651351e-03

Joint ci ratio: 1.973841e-01	ci left: 9.345214e-04	ci right 1.141629e-03	k: 393	n:380000
Cons ci ratio: 1.130000e-02	ci left: 2.391576e-01	ci right 2.418780e-01	k: 91396	n:380000
KS ci ratio: 1.857167e-01	ci left: 1.062308e-03	ci right 1.282254e-03	k: 444	n:380000
C16orf11   380000 perm   136 sec   (2787 perm/sec)   p_kst 1.168421e-03   p_cons 2.405158e-01   p_joint 1.034211e-03

Joint ci ratio: 1.942055e-01	ci left: 9.422590e-04	ci right 1.147322e-03	k: 406	n:390000
Cons ci ratio: 1.114990e-02	ci left: 2.393154e-01	ci right 2.420012e-01	k: 93856	n:390000
KS ci ratio: 1.826629e-01	ci left: 1.071758e-03	ci right 1.289608e-03	k: 459	n:390000
C16orf11   390000 perm   142 sec   (2753 perm/sec)   p_kst 1.176923e-03   p_cons 2.406564e-01   p_joint 1.041026e-03

Joint ci ratio: 1.927907e-01	ci left: 9.329755e-04	ci right 1.134365e-03	k: 412	n:400000
Cons ci ratio: 1.100615e-02	ci left: 2.394482e-01	ci right 2.421006e-01	k: 96309	n:400000
KS ci ratio: 1.810958e-01	ci left: 1.064053e-03	ci right 1.278278e-03	k: 467	n:400000
C16orf11   400000 perm   147 sec   (2718 perm/sec)   p_kst 1.167500e-03   p_cons 2.407725e-01   p_joint 1.030000e-03

Joint ci ratio: 1.904983e-01	ci left: 9.334400e-04	ci right 1.132257e-03	k: 422	n:410000
Cons ci ratio: 1.087246e-02	ci left: 2.394188e-01	ci right 2.420385e-01	k: 98698	n:410000
KS ci ratio: 1.788177e-01	ci left: 1.066051e-03	ci right 1.277686e-03	k: 479	n:410000
C16orf11   410000 perm   153 sec   (2684 perm/sec)   p_kst 1.168293e-03   p_cons 2.407268e-01   p_joint 1.029268e-03

Joint ci ratio: 1.880686e-01	ci left: 9.361648e-04	ci right 1.132728e-03	k: 433	n:420000
Cons ci ratio: 1.074045e-02	ci left: 2.394956e-01	ci right 2.420841e-01	k: 101131	n:420000
KS ci ratio: 1.760868e-01	ci left: 1.074797e-03	ci right 1.284563e-03	k: 494	n:420000
C16orf11   420000 perm   158 sec   (2652 perm/sec)   p_kst 1.176190e-03   p_cons 2.407881e-01   p_joint 1.030952e-03

Joint ci ratio: 1.855209e-01	ci left: 9.409958e-04	ci right 1.135596e-03	k: 445	n:430000
Cons ci ratio: 1.061529e-02	ci left: 2.394948e-01	ci right 2.420529e-01	k: 103532	n:430000
KS ci ratio: 1.743350e-01	ci left: 1.072038e-03	ci right 1.278964e-03	k: 504	n:430000
C16orf11   430000 perm   164 sec   (2622 perm/sec)   p_kst 1.172093e-03   p_cons 2.407721e-01   p_joint 1.034884e-03

Joint ci ratio: 1.771698e-01	ci left: 1.012906e-03	ci right 1.211939e-03	k: 488	n:440000
Cons ci ratio: 1.014081e-02	ci left: 2.522242e-01	ci right 2.547972e-01	k: 111544	n:440000
KS ci ratio: 1.722999e-01	ci left: 1.073763e-03	ci right 1.278352e-03	k: 516	n:440000
C16orf11   440000 perm   170 sec   (2593 perm/sec)   p_kst 1.172727e-03   p_cons 2.535091e-01   p_joint 1.109091e-03

Joint ci ratio: 1.811076e-01	ci left: 9.458198e-04	ci right 1.136254e-03	k: 467	n:450000
Cons ci ratio: 1.003275e-02	ci left: 2.520409e-01	ci right 2.545845e-01	k: 113990	n:450000
KS ci ratio: 1.703344e-01	ci left: 1.075425e-03	ci right 1.277753e-03	k: 528	n:450000
C16orf11   450000 perm   176 sec   (2564 perm/sec)   p_kst 1.173333e-03   p_cons 2.533111e-01   p_joint 1.037778e-03

Joint ci ratio: 1.786429e-01	ci left: 9.522472e-04	ci right 1.141085e-03	k: 480	n:460000
Cons ci ratio: 9.922761e-03	ci left: 2.520676e-01	ci right 2.545834e-01	k: 116529	n:460000
KS ci ratio: 1.689042e-01	ci left: 1.070780e-03	ci right 1.270371e-03	k: 537	n:460000
C16orf11   460000 perm   181 sec   (2536 perm/sec)   p_kst 1.167391e-03   p_cons 2.533239e-01   p_joint 1.043478e-03

Joint ci ratio: 1.925724e-01	ci left: 7.960412e-04	ci right 9.676546e-04	k: 413	n:470000
Cons ci ratio: 1.016146e-02	ci left: 2.392659e-01	ci right 2.417117e-01	k: 113029	n:470000
KS ci ratio: 1.679711e-01	ci left: 1.060225e-03	ci right 1.256646e-03	k: 543	n:470000
C16orf11   470000 perm   187 sec   (2508 perm/sec)   p_kst 1.155319e-03   p_cons 2.404872e-01   p_joint 8.787234e-04

Joint ci ratio: 1.911925e-01	ci left: 7.913563e-04	ci right 9.605952e-04	k: 419	n:480000
Cons ci ratio: 1.005436e-02	ci left: 2.393039e-01	ci right 2.417242e-01	k: 115446	n:480000
KS ci ratio: 1.667501e-01	ci left: 1.054105e-03	ci right 1.247830e-03	k: 551	n:480000
C16orf11   480000 perm   194 sec   (2479 perm/sec)   p_kst 1.147917e-03   p_cons 2.405125e-01   p_joint 8.729167e-04

Joint ci ratio: 1.902895e-01	ci left: 7.829793e-04	ci right 9.495443e-04	k: 423	n:490000
Cons ci ratio: 9.950240e-03	ci left: 2.393528e-01	ci right 2.417483e-01	k: 117869	n:490000
KS ci ratio: 1.657036e-01	ci left: 1.046284e-03	ci right 1.237244e-03	k: 558	n:490000
C16orf11   490000 perm   200 sec   (2453 perm/sec)   p_kst 1.138776e-03   p_cons 2.405490e-01   p_joint 8.632653e-04

Joint ci ratio: 1.887382e-01	ci left: 7.806554e-04	ci right 9.452169e-04	k: 430	n:500000
Cons ci ratio: 9.848753e-03	ci left: 2.394197e-01	ci right 2.417913e-01	k: 120302	n:500000
KS ci ratio: 1.640970e-01	ci left: 1.046451e-03	ci right 1.235406e-03	k: 569	n:500000
C16orf11   500000 perm   206 sec   (2427 perm/sec)   p_kst 1.138000e-03   p_cons 2.406040e-01   p_joint 8.600000e-04

Joint ci ratio: 1.872242e-01	ci left: 7.784279e-04	ci right 9.410541e-04	k: 437	n:510000
Cons ci ratio: 9.751460e-03	ci left: 2.394411e-01	ci right 2.417893e-01	k: 122713	n:510000
KS ci ratio: 1.633830e-01	ci left: 1.035334e-03	ci right 1.221389e-03	k: 574	n:510000
C16orf11   510000 perm   213 sec   (2400 perm/sec)   p_kst 1.125490e-03   p_cons 2.406137e-01   p_joint 8.568627e-04

Joint ci ratio: 1.859553e-01	ci left: 7.744575e-04	ci right 9.350339e-04	k: 443	n:520000
Cons ci ratio: 9.658367e-03	ci left: 2.394099e-01	ci right 2.417353e-01	k: 125097	n:520000
KS ci ratio: 1.621195e-01	ci left: 1.032026e-03	ci right 1.215913e-03	k: 583	n:520000
C16orf11   520000 perm   219 sec   (2374 perm/sec)   p_kst 1.121154e-03   p_cons 2.405712e-01   p_joint 8.519231e-04

Joint ci ratio: 1.838957e-01	ci left: 7.778398e-04	ci right 9.371320e-04	k: 453	n:530000
Cons ci ratio: 9.570411e-03	ci left: 2.392839e-01	ci right 2.415868e-01	k: 127430	n:530000
KS ci ratio: 1.602101e-01	ci left: 1.037904e-03	ci right 1.220450e-03	k: 597	n:530000
C16orf11   530000 perm   226 sec   (2349 perm/sec)   p_kst 1.126415e-03   p_cons 2.404340e-01   p_joint 8.547170e-04

Joint ci ratio: 1.820996e-01	ci left: 7.793386e-04	ci right 9.372069e-04	k: 462	n:540000
Cons ci ratio: 9.478132e-03	ci left: 2.394197e-01	ci right 2.417016e-01	k: 129902	n:540000
KS ci ratio: 1.584963e-01	ci left: 1.041798e-03	ci right 1.222882e-03	k: 610	n:540000
C16orf11   540000 perm   232 sec   (2324 perm/sec)   p_kst 1.129630e-03   p_cons 2.405593e-01   p_joint 8.555556e-04

Joint ci ratio: 1.811248e-01	ci left: 7.738462e-04	ci right 9.296708e-04	k: 467	n:550000
Cons ci ratio: 9.392488e-03	ci left: 2.393946e-01	ci right 2.416555e-01	k: 132288	n:550000
KS ci ratio: 1.575968e-01	ci left: 1.035079e-03	ci right 1.213879e-03	k: 617	n:550000
C16orf11   550000 perm   239 sec   (2300 perm/sec)   p_kst 1.121818e-03   p_cons 2.405236e-01   p_joint 8.490909e-04

Joint ci ratio: 1.795964e-01	ci left: 7.736683e-04	ci right 9.279996e-04	k: 475	n:560000
Cons ci ratio: 9.311401e-03	ci left: 2.392812e-01	ci right 2.415214e-01	k: 134624	n:560000
KS ci ratio: 1.557178e-01	ci left: 1.042332e-03	ci right 1.220037e-03	k: 632	n:560000
C16orf11   560000 perm   246 sec   (2277 perm/sec)   p_kst 1.128571e-03   p_cons 2.404000e-01   p_joint 8.482143e-04

Joint ci ratio: 1.771923e-01	ci left: 7.818841e-04	ci right 9.355428e-04	k: 488	n:570000
Cons ci ratio: 9.227589e-03	ci left: 2.393612e-01	ci right 2.415818e-01	k: 137068	n:570000
KS ci ratio: 1.545024e-01	ci left: 1.040908e-03	ci right 1.216857e-03	k: 642	n:570000
C16orf11   570000 perm   253 sec   (2254 perm/sec)   p_kst 1.126316e-03   p_cons 2.404702e-01   p_joint 8.561404e-04

Joint ci ratio: 1.807427e-01	ci left: 7.371105e-04	ci right 8.851904e-04	k: 469	n:580000
Cons ci ratio: 9.147510e-03	ci left: 2.393782e-01	ci right 2.415796e-01	k: 139477	n:580000
KS ci ratio: 1.528470e-01	ci left: 1.046171e-03	ci right 1.220942e-03	k: 656	n:580000
C16orf11   580000 perm   260 sec   (2231 perm/sec)   p_kst 1.131034e-03   p_cons 2.404776e-01   p_joint 8.086207e-04

Joint ci ratio: 1.788498e-01	ci left: 7.408036e-04	ci right 8.878981e-04	k: 479	n:590000
Cons ci ratio: 9.071248e-03	ci left: 2.393236e-01	ci right 2.415061e-01	k: 141844	n:590000
KS ci ratio: 1.513567e-01	ci left: 1.049635e-03	ci right 1.223120e-03	k: 669	n:590000
C16orf11   590000 perm   267 sec   (2209 perm/sec)   p_kst 1.133898e-03   p_cons 2.404136e-01   p_joint 8.118644e-04

Joint ci ratio: 1.768346e-01	ci left: 7.459743e-04	ci right 8.922482e-04	k: 490	n:600000
Cons ci ratio: 8.997519e-03	ci left: 2.392443e-01	ci right 2.414082e-01	k: 144195	n:600000
KS ci ratio: 1.503505e-01	ci left: 1.046575e-03	ci right 1.218300e-03	k: 678	n:600000
C16orf11   600000 perm   274 sec   (2188 perm/sec)   p_kst 1.130000e-03   p_cons 2.403250e-01   p_joint 8.166667e-04

Joint ci ratio: 1.681483e-01	ci left: 8.153156e-04	ci right 9.665384e-04	k: 542	n:610000
Cons ci ratio: 8.921512e-03	ci left: 2.393330e-01	ci right 2.414793e-01	k: 146647	n:610000
KS ci ratio: 1.487164e-01	ci left: 1.053088e-03	ci right 1.223837e-03	k: 693	n:610000
C16orf11   610000 perm   282 sec   (2165 perm/sec)   p_kst 1.136066e-03   p_cons 2.404049e-01   p_joint 8.885246e-04

Joint ci ratio: 1.670751e-01	ci left: 8.129820e-04	ci right 9.627127e-04	k: 549	n:620000
Cons ci ratio: 8.848806e-03	ci left: 2.393609e-01	ci right 2.414899e-01	k: 149063	n:620000
KS ci ratio: 1.476565e-01	ci left: 1.051634e-03	ci right 1.220825e-03	k: 703	n:620000
C16orf11   620000 perm   289 sec   (2144 perm/sec)   p_kst 1.133871e-03   p_cons 2.404242e-01   p_joint 8.854839e-04

Joint ci ratio: 1.690882e-01	ci left: 7.803094e-04	ci right 9.259308e-04	k: 536	n:630000
Cons ci ratio: 8.776895e-03	ci left: 2.394276e-01	ci right 2.415399e-01	k: 151504	n:630000
KS ci ratio: 1.465164e-01	ci left: 1.051759e-03	ci right 1.219549e-03	k: 714	n:630000
C16orf11   630000 perm   297 sec   (2124 perm/sec)   p_kst 1.133333e-03   p_cons 2.404825e-01   p_joint 8.507937e-04

Joint ci ratio: 1.678427e-01	ci left: 7.800901e-04	ci right 9.244897e-04	k: 544	n:640000
Cons ci ratio: 8.709987e-03	ci left: 2.393550e-01	ci right 2.414505e-01	k: 153857	n:640000
KS ci ratio: 1.454022e-01	ci left: 1.051885e-03	ci right 1.218308e-03	k: 725	n:640000
C16orf11   640000 perm   304 sec   (2104 perm/sec)   p_kst 1.132812e-03   p_cons 2.404016e-01   p_joint 8.500000e-04

Joint ci ratio: 1.625562e-01	ci left: 8.211855e-04	ci right 9.679369e-04	k: 580	n:650000
Cons ci ratio: 8.643711e-03	ci left: 2.393216e-01	ci right 2.414007e-01	k: 156234	n:650000
KS ci ratio: 1.435353e-01	ci left: 1.063877e-03	ci right 1.229851e-03	k: 744	n:650000
C16orf11   650000 perm   312 sec   (2084 perm/sec)   p_kst 1.144615e-03   p_cons 2.403600e-01   p_joint 8.923077e-04

Joint ci ratio: 1.613116e-01	ci left: 8.218271e-04	ci right 9.674596e-04	k: 589	n:660000
Cons ci ratio: 8.576506e-03	ci left: 2.393921e-01	ci right 2.414556e-01	k: 158679	n:660000
KS ci ratio: 1.425817e-01	ci left: 1.062367e-03	ci right 1.226911e-03	k: 754	n:660000
C16orf11   660000 perm   320 sec   (2066 perm/sec)   p_kst 1.142424e-03   p_cons 2.404227e-01   p_joint 8.924242e-04

Joint ci ratio: 1.603633e-01	ci left: 8.195882e-04	ci right 9.638879e-04	k: 596	n:670000
Cons ci ratio: 8.515263e-03	ci left: 2.392713e-01	ci right 2.413190e-01	k: 160997	n:670000
KS ci ratio: 1.413696e-01	ci left: 1.065224e-03	ci right 1.228690e-03	k: 767	n:670000
C16orf11   670000 perm   327 sec   (2047 perm/sec)   p_kst 1.144776e-03   p_cons 2.402940e-01   p_joint 8.895522e-04

Joint ci ratio: 1.589058e-01	ci left: 8.230658e-04	ci right 9.665351e-04	k: 607	n:680000
Cons ci ratio: 8.450273e-03	ci left: 2.393715e-01	ci right 2.414043e-01	k: 163463	n:680000
KS ci ratio: 1.403680e-01	ci left: 1.065166e-03	ci right 1.227367e-03	k: 778	n:680000
C16orf11   680000 perm   335 sec   (2029 perm/sec)   p_kst 1.144118e-03   p_cons 2.403868e-01   p_joint 8.926471e-04

Joint ci ratio: 1.579991e-01	ci left: 8.208799e-04	ci right 9.630743e-04	k: 614	n:690000
Cons ci ratio: 8.387447e-03	ci left: 2.394384e-01	ci right 2.414565e-01	k: 165908	n:690000
KS ci ratio: 1.394758e-01	ci left: 1.063714e-03	ci right 1.224579e-03	k: 788	n:690000
C16orf11   690000 perm   343 sec   (2010 perm/sec)   p_kst 1.142029e-03   p_cons 2.404464e-01   p_joint 8.898551e-04

Joint ci ratio: 1.572343e-01	ci left: 8.173863e-04	ci right 9.582255e-04	k: 620	n:700000
Cons ci ratio: 8.327337e-03	ci left: 2.394450e-01	ci right 2.414486e-01	k: 168312	n:700000
KS ci ratio: 1.382543e-01	ci left: 1.067823e-03	ci right 1.227780e-03	k: 802	n:700000
C16orf11   700000 perm   351 sec   (1992 perm/sec)   p_kst 1.145714e-03   p_cons 2.404457e-01   p_joint 8.857143e-04

Joint ci ratio: 1.564805e-01	ci left: 8.139927e-04	ci right 9.535117e-04	k: 626	n:710000
Cons ci ratio: 8.270446e-03	ci left: 2.393656e-01	ci right 2.413548e-01	k: 170655	n:710000
KS ci ratio: 1.374016e-01	ci left: 1.066382e-03	ci right 1.225057e-03	k: 812	n:710000
C16orf11   710000 perm   360 sec   (1974 perm/sec)   p_kst 1.143662e-03   p_cons 2.403592e-01   p_joint 8.816901e-04

Joint ci ratio: 1.548826e-01	ci left: 8.200396e-04	ci right 9.590266e-04	k: 639	n:720000
Cons ci ratio: 8.212393e-03	ci left: 2.393911e-01	ci right 2.413665e-01	k: 173072	n:720000
KS ci ratio: 1.364814e-01	ci left: 1.066326e-03	ci right 1.223843e-03	k: 823	n:720000
C16orf11   720000 perm   368 sec   (1957 perm/sec)   p_kst 1.143056e-03   p_cons 2.403778e-01   p_joint 8.875000e-04

Joint ci ratio: 1.536865e-01	ci left: 8.219760e-04	ci right 9.601162e-04	k: 649	n:730000
Cons ci ratio: 8.155791e-03	ci left: 2.394050e-01	ci right 2.413669e-01	k: 175481	n:730000
KS ci ratio: 1.359877e-01	ci left: 1.059657e-03	ci right 1.215578e-03	k: 829	n:730000
C16orf11   730000 perm   376 sec   (1940 perm/sec)   p_kst 1.135616e-03   p_cons 2.403849e-01   p_joint 8.890411e-04

Joint ci ratio: 1.526334e-01	ci left: 8.225643e-04	ci right 9.597696e-04	k: 658	n:740000
Cons ci ratio: 8.101242e-03	ci left: 2.393781e-01	ci right 2.413266e-01	k: 177860	n:740000
KS ci ratio: 1.350152e-01	ci left: 1.061004e-03	ci right 1.215916e-03	k: 841	n:740000
C16orf11   740000 perm   385 sec   (1924 perm/sec)   p_kst 1.136486e-03   p_cons 2.403514e-01   p_joint 8.891892e-04

Joint ci ratio: 1.517154e-01	ci left: 8.218573e-04	ci right 9.580452e-04	k: 666	n:750000
Cons ci ratio: 8.047714e-03	ci left: 2.393547e-01	ci right 2.412900e-01	k: 180241	n:750000
KS ci ratio: 1.342206e-01	ci left: 1.059742e-03	ci right 1.213486e-03	k: 851	n:750000
C16orf11   750000 perm   393 sec   (1907 perm/sec)   p_kst 1.134667e-03   p_cons 2.403213e-01   p_joint 8.880000e-04

Joint ci ratio: 1.531010e-01	ci left: 7.958552e-04	ci right 9.290492e-04	k: 654	n:760000
Cons ci ratio: 7.993073e-03	ci left: 2.394304e-01	ci right 2.413532e-01	k: 182697	n:760000
KS ci ratio: 1.333625e-01	ci left: 1.059787e-03	ci right 1.212477e-03	k: 862	n:760000
C16orf11   760000 perm   402 sec   (1891 perm/sec)   p_kst 1.134211e-03   p_cons 2.403908e-01   p_joint 8.605263e-04

Joint ci ratio: 1.521745e-01	ci left: 7.955122e-04	ci right 9.277698e-04	k: 662	n:770000
Cons ci ratio: 7.938825e-03	ci left: 2.395366e-01	ci right 2.414471e-01	k: 185178	n:770000
KS ci ratio: 1.322181e-01	ci left: 1.064857e-03	ci right 1.216858e-03	k: 877	n:770000
C16orf11   770000 perm   411 sec   (1875 perm/sec)   p_kst 1.138961e-03   p_cons 2.404909e-01   p_joint 8.597403e-04

Joint ci ratio: 1.541664e-01	ci left: 7.643528e-04	ci right 8.932470e-04	k: 645	n:780000
Cons ci ratio: 7.887824e-03	ci left: 2.395403e-01	ci right 2.414385e-01	k: 187581	n:780000
KS ci ratio: 1.315458e-01	ci left: 1.062363e-03	ci right 1.213176e-03	k: 886	n:780000
C16orf11   780000 perm   420 sec   (1859 perm/sec)   p_kst 1.135897e-03   p_cons 2.404885e-01   p_joint 8.269231e-04

Joint ci ratio: 1.532206e-01	ci left: 7.644146e-04	ci right 8.924558e-04	k: 653	n:790000
Cons ci ratio: 7.839070e-03	ci left: 2.394846e-01	ci right 2.413705e-01	k: 189937	n:790000
KS ci ratio: 1.310301e-01	ci left: 1.057485e-03	ci right 1.206971e-03	k: 893	n:790000
C16orf11   790000 perm   428 sec   (1844 perm/sec)   p_kst 1.130380e-03   p_cons 2.404266e-01   p_joint 8.265823e-04

Joint ci ratio: 1.529874e-01	ci left: 7.572634e-04	ci right 8.838961e-04	k: 655	n:800000
Cons ci ratio: 7.790836e-03	ci left: 2.394477e-01	ci right 2.413217e-01	k: 192307	n:800000
KS ci ratio: 1.303757e-01	ci left: 1.055148e-03	ci right 1.203502e-03	k: 902	n:800000
C16orf11   800000 perm   437 sec   (1829 perm/sec)   p_kst 1.127500e-03   p_cons 2.403838e-01   p_joint 8.187500e-04

Joint ci ratio: 1.525235e-01	ci left: 7.526639e-04	ci right 8.781108e-04	k: 659	n:810000
Cons ci ratio: 7.742486e-03	ci left: 2.394586e-01	ci right 2.413210e-01	k: 194715	n:810000
KS ci ratio: 1.298023e-01	ci left: 1.051677e-03	ci right 1.198842e-03	k: 910	n:810000
C16orf11   810000 perm   446 sec   (1815 perm/sec)   p_kst 1.123457e-03   p_cons 2.403889e-01   p_joint 8.135802e-04

Joint ci ratio: 1.518351e-01	ci left: 7.505234e-04	ci right 8.749977e-04	k: 665	n:820000
Cons ci ratio: 7.696362e-03	ci left: 2.394060e-01	ci right 2.412568e-01	k: 197071	n:820000
KS ci ratio: 1.291660e-01	ci left: 1.049471e-03	ci right 1.195553e-03	k: 919	n:820000
C16orf11   820000 perm   455 sec   (1801 perm/sec)   p_kst 1.120732e-03   p_cons 2.403305e-01   p_joint 8.109756e-04

Joint ci ratio: 1.510435e-01	ci left: 7.495951e-04	ci right 8.732087e-04	k: 672	n:830000
Cons ci ratio: 7.647999e-03	ci left: 2.395002e-01	ci right 2.413401e-01	k: 199548	n:830000
KS ci ratio: 1.285390e-01	ci left: 1.047321e-03	ci right 1.192341e-03	k: 928	n:830000
C16orf11   830000 perm   464 sec   (1787 perm/sec)   p_kst 1.118072e-03   p_cons 2.404193e-01   p_joint 8.096386e-04

Joint ci ratio: 1.567416e-01	ci left: 6.857264e-04	ci right 8.034748e-04	k: 624	n:840000
Cons ci ratio: 7.602592e-03	ci left: 2.394936e-01	ci right 2.413225e-01	k: 201942	n:840000
KS ci ratio: 1.275810e-01	ci left: 1.050986e-03	ci right 1.195347e-03	k: 942	n:840000
C16orf11   840000 perm   474 sec   (1773 perm/sec)   p_kst 1.121429e-03   p_cons 2.404071e-01   p_joint 7.428571e-04

Joint ci ratio: 1.561186e-01	ci left: 6.833110e-04	ci right 8.001346e-04	k: 629	n:850000
Cons ci ratio: 7.557692e-03	ci left: 2.395013e-01	ci right 2.413193e-01	k: 204348	n:850000
KS ci ratio: 1.273792e-01	ci left: 1.042038e-03	ci right 1.184926e-03	k: 945	n:850000
C16orf11   850000 perm   483 sec   (1760 perm/sec)   p_kst 1.111765e-03   p_cons 2.404094e-01   p_joint 7.400000e-04

Joint ci ratio: 1.464362e-01	ci left: 7.715867e-04	ci right 8.946062e-04	k: 715	n:860000
Cons ci ratio: 7.512430e-03	ci left: 2.395645e-01	ci right 2.413721e-01	k: 206802	n:860000
KS ci ratio: 1.267777e-01	ci left: 1.040053e-03	ci right 1.181946e-03	k: 954	n:860000
C16orf11   860000 perm   492 sec   (1747 perm/sec)   p_kst 1.109302e-03   p_cons 2.404674e-01   p_joint 8.313953e-04

Joint ci ratio: 1.462326e-01	ci left: 7.649323e-04	ci right 8.867066e-04	k: 717	n:870000
Cons ci ratio: 7.468653e-03	ci left: 2.395930e-01	ci right 2.413903e-01	k: 209227	n:870000
KS ci ratio: 1.265796e-01	ci left: 1.031437e-03	ci right 1.171918e-03	k: 957	n:870000
C16orf11   870000 perm   502 sec   (1734 perm/sec)   p_kst 1.100000e-03   p_cons 2.404908e-01   p_joint 8.241379e-04

Joint ci ratio: 1.450254e-01	ci left: 7.693796e-04	ci right 8.907631e-04	k: 729	n:880000
Cons ci ratio: 7.425678e-03	ci left: 2.396187e-01	ci right 2.414058e-01	k: 211650	n:880000
KS ci ratio: 1.258591e-01	ci left: 1.031822e-03	ci right 1.171495e-03	k: 968	n:880000
C16orf11   880000 perm   511 sec   (1721 perm/sec)   p_kst 1.100000e-03   p_cons 2.405114e-01   p_joint 8.284091e-04

Joint ci ratio: 1.419457e-01	ci left: 7.954000e-04	ci right 9.179985e-04	k: 761	n:890000
Cons ci ratio: 7.383551e-03	ci left: 2.396382e-01	ci right 2.414152e-01	k: 214068	n:890000
KS ci ratio: 1.249594e-01	ci left: 1.035465e-03	ci right 1.174556e-03	k: 982	n:890000
C16orf11   890000 perm   521 sec   (1708 perm/sec)   p_kst 1.103371e-03   p_cons 2.405258e-01   p_joint 8.550562e-04

Joint ci ratio: 1.412983e-01	ci left: 7.940644e-04	ci right 9.158517e-04	k: 768	n:900000
Cons ci ratio: 7.341909e-03	ci left: 2.396684e-01	ci right 2.414355e-01	k: 216496	n:900000
KS ci ratio: 1.242661e-01	ci left: 1.035801e-03	ci right 1.174108e-03	k: 993	n:900000
C16orf11   900000 perm   531 sec   (1695 perm/sec)   p_kst 1.103333e-03   p_cons 2.405511e-01   p_joint 8.533333e-04

Joint ci ratio: 1.408415e-01	ci left: 7.906389e-04	ci right 9.114758e-04	k: 773	n:910000
Cons ci ratio: 7.301161e-03	ci left: 2.396880e-01	ci right 2.414455e-01	k: 218915	n:910000
KS ci ratio: 1.238931e-01	ci left: 1.030808e-03	ci right 1.168004e-03	k: 999	n:910000
C16orf11   910000 perm   541 sec   (1682 perm/sec)   p_kst 1.097802e-03   p_cons 2.405659e-01   p_joint 8.494505e-04

Joint ci ratio: 1.422282e-01	ci left: 7.663173e-04	ci right 8.846880e-04	k: 758	n:920000
Cons ci ratio: 7.261755e-03	ci left: 2.396736e-01	ci right 2.414215e-01	k: 221303	n:920000
KS ci ratio: 1.229739e-01	ci left: 1.035404e-03	ci right 1.172116e-03	k: 1014	n:920000
C16orf11   920000 perm   551 sec   (1670 perm/sec)   p_kst 1.102174e-03   p_cons 2.405467e-01   p_joint 8.239130e-04

Joint ci ratio: 1.413003e-01	ci left: 7.684487e-04	ci right 8.863090e-04	k: 768	n:930000
Cons ci ratio: 7.221236e-03	ci left: 2.397476e-01	ci right 2.414862e-01	k: 223773	n:930000
KS ci ratio: 1.222533e-01	ci left: 1.036778e-03	ci right 1.172811e-03	k: 1026	n:930000
C16orf11   930000 perm   561 sec   (1658 perm/sec)   p_kst 1.103226e-03   p_cons 2.406161e-01   p_joint 8.258065e-04

Joint ci ratio: 1.431765e-01	ci left: 7.397535e-04	ci right 8.548479e-04	k: 748	n:940000
Cons ci ratio: 7.182747e-03	ci left: 2.397510e-01	ci right 2.414803e-01	k: 226178	n:940000
KS ci ratio: 1.216038e-01	ci left: 1.037094e-03	ci right 1.172393e-03	k: 1037	n:940000
C16orf11   940000 perm   571 sec   (1646 perm/sec)   p_kst 1.103191e-03   p_cons 2.406149e-01   p_joint 7.957447e-04

Joint ci ratio: 1.426066e-01	ci left: 7.380565e-04	ci right 8.523910e-04	k: 754	n:950000
Cons ci ratio: 7.144600e-03	ci left: 2.397681e-01	ci right 2.414883e-01	k: 228596	n:950000
KS ci ratio: 1.207343e-01	ci left: 1.041488e-03	ci right 1.176320e-03	k: 1052	n:950000
C16orf11   950000 perm   582 sec   (1634 perm/sec)   p_kst 1.107368e-03   p_cons 2.406274e-01   p_joint 7.936842e-04

Joint ci ratio: 1.384485e-01	ci left: 7.766018e-04	ci right 8.931106e-04	k: 800	n:960000
Cons ci ratio: 7.106668e-03	ci left: 2.398045e-01	ci right 2.415158e-01	k: 231033	n:960000
KS ci ratio: 1.201086e-01	ci left: 1.041753e-03	ci right 1.175870e-03	k: 1063	n:960000
C16orf11   960000 perm   592 sec   (1622 perm/sec)   p_kst 1.107292e-03   p_cons 2.406594e-01   p_joint 8.333333e-04

Joint ci ratio: 1.359250e-01	ci left: 7.984627e-04	ci right 9.158911e-04	k: 830	n:970000
Cons ci ratio: 7.068777e-03	ci left: 2.398691e-01	ci right 2.415717e-01	k: 233498	n:970000
KS ci ratio: 1.192706e-01	ci left: 1.046014e-03	ci right 1.179674e-03	k: 1078	n:970000
C16orf11   970000 perm   602 sec   (1610 perm/sec)   p_kst 1.111340e-03   p_cons 2.407196e-01   p_joint 8.556701e-04

Joint ci ratio: 1.352754e-01	ci left: 7.982014e-04	ci right 9.149853e-04	k: 838	n:980000
Cons ci ratio: 7.033193e-03	ci left: 2.398437e-01	ci right 2.415375e-01	k: 235876	n:980000
KS ci ratio: 1.185584e-01	ci left: 1.048211e-03	ci right 1.181296e-03	k: 1091	n:980000
C16orf11   980000 perm   613 sec   (1598 perm/sec)   p_kst 1.113265e-03   p_cons 2.406898e-01   p_joint 8.551020e-04

Joint ci ratio: 1.345556e-01	ci left: 7.989229e-04	ci right 9.151406e-04	k: 847	n:990000
Cons ci ratio: 6.998063e-03	ci left: 2.398228e-01	ci right 2.415080e-01	k: 238258	n:990000
KS ci ratio: 1.180193e-01	ci left: 1.047425e-03	ci right 1.179764e-03	k: 1101	n:990000
C16orf11   990000 perm   624 sec   (1587 perm/sec)   p_kst 1.112121e-03   p_cons 2.406646e-01   p_joint 8.555556e-04

Joint ci ratio: 1.338472e-01	ci left: 7.996315e-04	ci right 9.152911e-04	k: 856	n:1000000
Cons ci ratio: 6.963474e-03	ci left: 2.398014e-01	ci right 2.414781e-01	k: 240639	n:1000000
KS ci ratio: 1.172766e-01	ci left: 1.050539e-03	ci right 1.182378e-03	k: 1115	n:1000000
C16orf11   1000000 perm   634 sec   (1576 perm/sec)   p_kst 1.115000e-03   p_cons 2.406390e-01   p_joint 8.560000e-04

Joint ci ratio: 1.333040e-01	ci left: 7.984134e-04	ci right 9.133911e-04	k: 863	n:1010000
Cons ci ratio: 6.928904e-03	ci left: 2.398062e-01	ci right 2.414745e-01	k: 243046	n:1010000
KS ci ratio: 1.169629e-01	ci left: 1.045904e-03	ci right 1.176786e-03	k: 1121	n:1010000
C16orf11   1010000 perm   645 sec   (1566 perm/sec)   p_kst 1.109901e-03   p_cons 2.406396e-01   p_joint 8.544554e-04

Joint ci ratio: 1.348761e-01	ci left: 7.716350e-04	ci right 8.841719e-04	k: 843	n:1020000
Cons ci ratio: 6.896010e-03	ci left: 2.397492e-01	ci right 2.414092e-01	k: 245390	n:1020000
KS ci ratio: 1.163423e-01	ci left: 1.047072e-03	ci right 1.177356e-03	k: 1133	n:1020000
C16orf11   1020000 perm   656 sec   (1555 perm/sec)   p_kst 1.110784e-03   p_cons 2.405784e-01   p_joint 8.264706e-04

Joint ci ratio: 1.275943e-01	ci left: 8.571091e-04	ci right 9.748528e-04	k: 942	n:1030000
Cons ci ratio: 6.861555e-03	ci left: 2.398009e-01	ci right 2.414529e-01	k: 247845	n:1030000
KS ci ratio: 1.158835e-01	ci left: 1.045390e-03	ci right 1.174917e-03	k: 1142	n:1030000
C16orf11   1030000 perm   667 sec   (1544 perm/sec)   p_kst 1.108738e-03   p_cons 2.406262e-01   p_joint 9.145631e-04

Joint ci ratio: 1.266572e-01	ci left: 8.619013e-04	ci right 9.793684e-04	k: 956	n:1040000
Cons ci ratio: 6.829265e-03	ci left: 2.397634e-01	ci right 2.414073e-01	k: 250208	n:1040000
KS ci ratio: 1.151801e-01	ci left: 1.048411e-03	ci right 1.177470e-03	k: 1156	n:1040000
C16orf11   1040000 perm   678 sec   (1534 perm/sec)   p_kst 1.111538e-03   p_cons 2.405846e-01   p_joint 9.192308e-04

Joint ci ratio: 1.259354e-01	ci left: 8.638379e-04	ci right 9.808481e-04	k: 967	n:1050000
Cons ci ratio: 6.797266e-03	ci left: 2.397351e-01	ci right 2.413711e-01	k: 252580	n:1050000
KS ci ratio: 1.143916e-01	ci left: 1.053227e-03	ci right 1.181932e-03	k: 1172	n:1050000
C16orf11   1050000 perm   689 sec   (1524 perm/sec)   p_kst 1.116190e-03   p_cons 2.405524e-01   p_joint 9.209524e-04

Joint ci ratio: 1.252258e-01	ci left: 8.657399e-04	ci right 9.822979e-04	k: 978	n:1060000
Cons ci ratio: 6.765521e-03	ci left: 2.397177e-01	ci right 2.413460e-01	k: 254963	n:1060000
KS ci ratio: 1.136669e-01	ci left: 1.057038e-03	ci right 1.185336e-03	k: 1187	n:1060000
C16orf11   1060000 perm   700 sec   (1513 perm/sec)   p_kst 1.119811e-03   p_cons 2.405311e-01   p_joint 9.226415e-04

Joint ci ratio: 1.246542e-01	ci left: 8.657972e-04	ci right 9.817915e-04	k: 987	n:1070000
Cons ci ratio: 6.733459e-03	ci left: 2.397418e-01	ci right 2.413624e-01	k: 257390	n:1070000
KS ci ratio: 1.131916e-01	ci left: 1.056240e-03	ci right 1.183869e-03	k: 1197	n:1070000
C16orf11   1070000 perm   712 sec   (1504 perm/sec)   p_kst 1.118692e-03   p_cons 2.405514e-01   p_joint 9.224299e-04

Joint ci ratio: 1.240280e-01	ci left: 8.667519e-04	ci right 9.822479e-04	k: 997	n:1080000
Cons ci ratio: 6.702630e-03	ci left: 2.397229e-01	ci right 2.413359e-01	k: 259771	n:1080000
KS ci ratio: 1.127689e-01	ci left: 1.054558e-03	ci right 1.181476e-03	k: 1206	n:1080000
C16orf11   1080000 perm   723 sec   (1494 perm/sec)   p_kst 1.116667e-03   p_cons 2.405287e-01   p_joint 9.231481e-04

Joint ci ratio: 1.280741e-01	ci left: 8.037107e-04	ci right 9.145656e-04	k: 935	n:1090000
Cons ci ratio: 6.671919e-03	ci left: 2.397208e-01	ci right 2.413264e-01	k: 262170	n:1090000
KS ci ratio: 1.121204e-01	ci left: 1.057366e-03	ci right 1.183841e-03	k: 1220	n:1090000
C16orf11   1090000 perm   734 sec   (1484 perm/sec)   p_kst 1.119266e-03   p_cons 2.405229e-01   p_joint 8.577982e-04

Joint ci ratio: 1.225028e-01	ci left: 8.730195e-04	ci right 9.878164e-04	k: 1022	n:1100000
Cons ci ratio: 6.642452e-03	ci left: 2.396734e-01	ci right 2.412716e-01	k: 264519	n:1100000
KS ci ratio: 1.118006e-01	ci left: 1.053939e-03	ci right 1.179621e-03	k: 1227	n:1100000
C16orf11   1100000 perm   746 sec   (1474 perm/sec)   p_kst 1.115455e-03   p_cons 2.404718e-01   p_joint 9.290909e-04

Joint ci ratio: 1.221453e-01	ci left: 8.703943e-04	ci right 9.844879e-04	k: 1028	n:1110000
Cons ci ratio: 6.612638e-03	ci left: 2.396674e-01	ci right 2.412583e-01	k: 266913	n:1110000
KS ci ratio: 1.112583e-01	ci left: 1.054953e-03	ci right 1.180106e-03	k: 1239	n:1110000
C16orf11   1110000 perm   758 sec   (1465 perm/sec)   p_kst 1.116216e-03   p_cons 2.404622e-01   p_joint 9.261261e-04

Joint ci ratio: 1.216733e-01	ci left: 8.695480e-04	ci right 9.830585e-04	k: 1036	n:1120000
Cons ci ratio: 6.583399e-03	ci left: 2.396516e-01	ci right 2.412354e-01	k: 269296	n:1120000
KS ci ratio: 1.109013e-01	ci left: 1.052478e-03	ci right 1.176911e-03	k: 1247	n:1120000
C16orf11   1120000 perm   770 sec   (1455 perm/sec)   p_kst 1.113393e-03   p_cons 2.404429e-01   p_joint 9.250000e-04

Joint ci ratio: 1.211487e-01	ci left: 8.695756e-04	ci right 9.825652e-04	k: 1045	n:1130000
Cons ci ratio: 6.554180e-03	ci left: 2.396565e-01	ci right 2.412333e-01	k: 271702	n:1130000
KS ci ratio: 1.105917e-01	ci left: 1.049187e-03	ci right 1.172862e-03	k: 1254	n:1130000
C16orf11   1130000 perm   781 sec   (1446 perm/sec)   p_kst 1.109735e-03   p_cons 2.404442e-01   p_joint 9.247788e-04

Joint ci ratio: 1.205166e-01	ci left: 8.713053e-04	ci right 9.838868e-04	k: 1056	n:1140000
Cons ci ratio: 6.525957e-03	ci left: 2.396272e-01	ci right 2.411969e-01	k: 274069	n:1140000
KS ci ratio: 1.099365e-01	ci left: 1.052779e-03	ci right 1.176094e-03	k: 1269	n:1140000
C16orf11   1140000 perm   793 sec   (1437 perm/sec)   p_kst 1.113158e-03   p_cons 2.404114e-01   p_joint 9.263158e-04

Joint ci ratio: 1.244692e-01	ci left: 8.080938e-04	ci right 9.161847e-04	k: 990	n:1150000
Cons ci ratio: 6.496982e-03	ci left: 2.396609e-01	ci right 2.412239e-01	k: 276508	n:1150000
KS ci ratio: 1.093354e-01	ci left: 1.055464e-03	ci right 1.178375e-03	k: 1283	n:1150000
C16orf11   1150000 perm   805 sec   (1428 perm/sec)   p_kst 1.115652e-03   p_cons 2.404417e-01   p_joint 8.608696e-04

Joint ci ratio: 1.256813e-01	ci left: 7.852600e-04	ci right 8.913958e-04	k: 971	n:1160000
Cons ci ratio: 6.468740e-03	ci left: 2.396742e-01	ci right 2.412305e-01	k: 278924	n:1160000
KS ci ratio: 1.089122e-01	ci left: 1.054751e-03	ci right 1.177072e-03	k: 1293	n:1160000
C16orf11   1160000 perm   817 sec   (1420 perm/sec)   p_kst 1.114655e-03   p_cons 2.404517e-01   p_joint 8.370690e-04

Joint ci ratio: 1.250397e-01	ci left: 7.868274e-04	ci right 8.925919e-04	k: 981	n:1170000
Cons ci ratio: 6.441482e-03	ci left: 2.396524e-01	ci right 2.412019e-01	k: 281299	n:1170000
KS ci ratio: 1.084106e-01	ci left: 1.055714e-03	ci right 1.177547e-03	k: 1305	n:1170000
C16orf11   1170000 perm   829 sec   (1411 perm/sec)   p_kst 1.115385e-03   p_cons 2.404265e-01   p_joint 8.384615e-04

Joint ci ratio: 1.244706e-01	ci left: 7.875485e-04	ci right 8.928925e-04	k: 990	n:1180000
Cons ci ratio: 6.414982e-03	ci left: 2.396072e-01	ci right 2.411500e-01	k: 283646	n:1180000
KS ci ratio: 1.079569e-01	ci left: 1.055837e-03	ci right 1.177142e-03	k: 1316	n:1180000
C16orf11   1180000 perm   842 sec   (1402 perm/sec)   p_kst 1.115254e-03   p_cons 2.403780e-01   p_joint 8.389831e-04

Joint ci ratio: 1.239091e-01	ci left: 7.882585e-04	ci right 8.931871e-04	k: 999	n:1190000
Cons ci ratio: 6.387380e-03	ci left: 2.396442e-01	ci right 2.411806e-01	k: 286090	n:1190000
KS ci ratio: 1.075494e-01	ci left: 1.055141e-03	ci right 1.175880e-03	k: 1326	n:1190000
C16orf11   1190000 perm   854 sec   (1393 perm/sec)   p_kst 1.114286e-03   p_cons 2.404118e-01   p_joint 8.394958e-04

Joint ci ratio: 1.234778e-01	ci left: 7.873425e-04	ci right 8.917576e-04	k: 1006	n:1200000
Cons ci ratio: 6.361743e-03	ci left: 2.395882e-01	ci right 2.411181e-01	k: 288423	n:1200000
KS ci ratio: 1.072671e-01	ci left: 1.052025e-03	ci right 1.172071e-03	k: 1333	n:1200000
C16orf11   1200000 perm   867 sec   (1385 perm/sec)   p_kst 1.110833e-03   p_cons 2.403525e-01   p_joint 8.383333e-04

Joint ci ratio: 1.225680e-01	ci left: 7.928509e-04	ci right 8.971655e-04	k: 1021	n:1210000
Cons ci ratio: 6.335336e-03	ci left: 2.395951e-01	ci right 2.411186e-01	k: 290831	n:1210000
KS ci ratio: 1.065898e-01	ci left: 1.057004e-03	ci right 1.176809e-03	k: 1350	n:1210000
C16orf11   1210000 perm   879 sec   (1377 perm/sec)   p_kst 1.115702e-03   p_cons 2.403562e-01   p_joint 8.438017e-04

Joint ci ratio: 1.221504e-01	ci left: 7.919142e-04	ci right 8.957250e-04	k: 1028	n:1220000
Cons ci ratio: 6.309581e-03	ci left: 2.395830e-01	ci right 2.411002e-01	k: 293216	n:1220000
KS ci ratio: 1.061585e-01	ci left: 1.057117e-03	ci right 1.176419e-03	k: 1361	n:1220000
C16orf11   1220000 perm   892 sec   (1368 perm/sec)   p_kst 1.115574e-03   p_cons 2.403410e-01   p_joint 8.426230e-04

Joint ci ratio: 1.216197e-01	ci left: 7.925699e-04	ci right 8.959827e-04	k: 1037	n:1230000
Cons ci ratio: 6.283369e-03	ci left: 2.396158e-01	ci right 2.411269e-01	k: 295656	n:1230000
KS ci ratio: 1.058096e-01	ci left: 1.055645e-03	ci right 1.174366e-03	k: 1370	n:1230000
C16orf11   1230000 perm   904 sec   (1360 perm/sec)   p_kst 1.113821e-03   p_cons 2.403707e-01   p_joint 8.430894e-04

Joint ci ratio: 1.209225e-01	ci left: 7.955621e-04	ci right 8.987278e-04	k: 1049	n:1240000
Cons ci ratio: 6.258184e-03	ci left: 2.396070e-01	ci right 2.411120e-01	k: 298045	n:1240000
KS ci ratio: 1.052353e-01	ci left: 1.058910e-03	ci right 1.177311e-03	k: 1385	n:1240000
C16orf11   1240000 perm   917 sec   (1352 perm/sec)   p_kst 1.116935e-03   p_cons 2.403589e-01   p_joint 8.459677e-04

Joint ci ratio: 1.203507e-01	ci left: 7.969563e-04	ci right 8.997792e-04	k: 1059	n:1250000
Cons ci ratio: 6.233069e-03	ci left: 2.396119e-01	ci right 2.411109e-01	k: 300451	n:1250000
KS ci ratio: 1.047451e-01	ci left: 1.060565e-03	ci right 1.178566e-03	k: 1398	n:1250000
C16orf11   1250000 perm   930 sec   (1344 perm/sec)   p_kst 1.118400e-03   p_cons 2.403608e-01   p_joint 8.472000e-04

Joint ci ratio: 1.198992e-01	ci left: 7.967896e-04	ci right 8.991780e-04	k: 1067	n:1260000
Cons ci ratio: 6.208860e-03	ci left: 2.395811e-01	ci right 2.410740e-01	k: 302812	n:1260000
KS ci ratio: 1.045215e-01	ci left: 1.056785e-03	ci right 1.174099e-03	k: 1404	n:1260000
C16orf11   1260000 perm   943 sec   (1336 perm/sec)   p_kst 1.114286e-03   p_cons 2.403270e-01   p_joint 8.468254e-04

Joint ci ratio: 1.193971e-01	ci left: 7.973902e-04	ci right 8.993965e-04	k: 1076	n:1270000
Cons ci ratio: 6.183971e-03	ci left: 2.396074e-01	ci right 2.410945e-01	k: 305245	n:1270000
KS ci ratio: 1.041515e-01	ci left: 1.056133e-03	ci right 1.172933e-03	k: 1414	n:1270000
C16orf11   1270000 perm   956 sec   (1328 perm/sec)   p_kst 1.113386e-03   p_cons 2.403504e-01   p_joint 8.472441e-04

Joint ci ratio: 1.186828e-01	ci left: 8.010145e-04	ci right 9.028284e-04	k: 1089	n:1280000
Cons ci ratio: 6.158905e-03	ci left: 2.396615e-01	ci right 2.411428e-01	k: 307714	n:1280000
KS ci ratio: 1.037490e-01	ci left: 1.056252e-03	ci right 1.172587e-03	k: 1425	n:1280000
C16orf11   1280000 perm   969 sec   (1320 perm/sec)   p_kst 1.113281e-03   p_cons 2.404016e-01   p_joint 8.507812e-04

Joint ci ratio: 1.182496e-01	ci left: 8.008229e-04	ci right 9.022149e-04	k: 1097	n:1290000
Cons ci ratio: 6.134180e-03	ci left: 2.397123e-01	ci right 2.411881e-01	k: 310180	n:1290000
KS ci ratio: 1.034955e-01	ci left: 1.053350e-03	ci right 1.169064e-03	k: 1432	n:1290000
C16orf11   1290000 perm   983 sec   (1313 perm/sec)   p_kst 1.110078e-03   p_cons 2.404496e-01   p_joint 8.503876e-04

Joint ci ratio: 1.177679e-01	ci left: 8.013815e-04	ci right 9.024021e-04	k: 1106	n:1300000
Cons ci ratio: 6.110380e-03	ci left: 2.397248e-01	ci right 2.411948e-01	k: 312597	n:1300000
KS ci ratio: 1.029935e-01	ci left: 1.055738e-03	ci right 1.171118e-03	k: 1446	n:1300000
C16orf11   1300000 perm   996 sec   (1305 perm/sec)   p_kst 1.112308e-03   p_cons 2.404592e-01   p_joint 8.507692e-04

Joint ci ratio: 1.113577e-01	ci left: 8.924030e-04	ci right 9.983730e-04	k: 1237	n:1310000
Cons ci ratio: 6.087021e-03	ci left: 2.397271e-01	ci right 2.411916e-01	k: 315001	n:1310000
KS ci ratio: 1.024286e-01	ci left: 1.059579e-03	ci right 1.174706e-03	k: 1462	n:1310000
C16orf11   1310000 perm   1010 sec   (1298 perm/sec)   p_kst 1.116031e-03   p_cons 2.404588e-01   p_joint 9.442748e-04

Joint ci ratio: 1.109106e-01	ci left: 8.930076e-04	ci right 9.985958e-04	k: 1247	n:1320000
Cons ci ratio: 6.063236e-03	ci left: 2.397711e-01	ci right 2.412300e-01	k: 317460	n:1320000
KS ci ratio: 1.021846e-01	ci left: 1.056719e-03	ci right 1.171245e-03	k: 1469	n:1320000
C16orf11   1320000 perm   1023 sec   (1290 perm/sec)   p_kst 1.112879e-03   p_cons 2.405000e-01   p_joint 9.446970e-04

Joint ci ratio: 1.106451e-01	ci left: 8.906795e-04	ci right 9.957238e-04	k: 1253	n:1330000
Cons ci ratio: 6.040424e-03	ci left: 2.397723e-01	ci right 2.412258e-01	k: 319863	n:1330000
KS ci ratio: 1.017700e-01	ci left: 1.057567e-03	ci right 1.171691e-03	k: 1481	n:1330000
C16orf11   1330000 perm   1037 sec   (1283 perm/sec)   p_kst 1.113534e-03   p_cons 2.404985e-01   p_joint 9.421053e-04

Joint ci ratio: 1.102939e-01	ci left: 8.898378e-04	ci right 9.944281e-04	k: 1261	n:1340000
Cons ci ratio: 6.017327e-03	ci left: 2.398064e-01	ci right 2.412544e-01	k: 322310	n:1340000
KS ci ratio: 1.014284e-01	ci left: 1.056947e-03	ci right 1.170600e-03	k: 1491	n:1340000
C16orf11   1340000 perm   1050 sec   (1276 perm/sec)   p_kst 1.112687e-03   p_cons 2.405299e-01   p_joint 9.410448e-04

Joint ci ratio: 1.098595e-01	ci left: 8.904499e-04	ci right 9.946732e-04	k: 1271	n:1350000
Cons ci ratio: 5.994747e-03	ci left: 2.398244e-01	ci right 2.412671e-01	k: 324736	n:1350000
KS ci ratio: 1.010902e-01	ci left: 1.056338e-03	ci right 1.169524e-03	k: 1501	n:1350000
C16orf11   1350000 perm   1064 sec   (1269 perm/sec)   p_kst 1.111852e-03   p_cons 2.405452e-01   p_joint 9.414815e-04

Joint ci ratio: 1.094302e-01	ci left: 8.910538e-04	ci right 9.949140e-04	k: 1281	n:1360000
Cons ci ratio: 5.973214e-03	ci left: 2.397936e-01	ci right 2.412310e-01	k: 327096	n:1360000
KS ci ratio: 1.007554e-01	ci left: 1.055738e-03	ci right 1.168463e-03	k: 1511	n:1360000
C16orf11   1360000 perm   1078 sec   (1262 perm/sec)   p_kst 1.111029e-03   p_cons 2.405118e-01   p_joint 9.419118e-04

Joint ci ratio: 1.087534e-01	ci left: 8.959100e-04	ci right 9.996490e-04	k: 1297	n:1370000
Cons ci ratio: 5.951209e-03	ci left: 2.398064e-01	ci right 2.412385e-01	k: 329515	n:1370000
KS ci ratio: 1.004570e-01	ci left: 1.054436e-03	ci right 1.166668e-03	k: 1520	n:1370000
C16orf11   1370000 perm   1092 sec   (1255 perm/sec)   p_kst 1.109489e-03   p_cons 2.405219e-01   p_joint 9.467153e-04

Joint ci ratio: 1.085447e-01	ci left: 8.929426e-04	ci right 9.961269e-04	k: 1302	n:1380000
Cons ci ratio: 5.929457e-03	ci left: 2.398182e-01	ci right 2.412452e-01	k: 331933	n:1380000
KS ci ratio: 9.999771e-02	ci left: 1.056686e-03	ci right 1.168613e-03	k: 1534	n:1380000
C16orf11   1380000 perm   1106 sec   (1248 perm/sec)   p_kst 1.111594e-03   p_cons 2.405312e-01   p_joint 9.434783e-04

Joint ci ratio: 1.080893e-01	ci left: 8.942178e-04	ci right 9.970885e-04	k: 1313	n:1390000
Cons ci ratio: 5.907814e-03	ci left: 2.398378e-01	ci right 2.412596e-01	k: 334362	n:1390000
KS ci ratio: 9.970592e-02	ci left: 1.055397e-03	ci right 1.166842e-03	k: 1543	n:1390000
C16orf11   1390000 perm   1120 sec   (1241 perm/sec)   p_kst 1.110072e-03   p_cons 2.405482e-01   p_joint 9.446043e-04

Joint ci ratio: 1.076397e-01	ci left: 8.954758e-04	ci right 9.980354e-04	k: 1324	n:1400000
Cons ci ratio: 5.887085e-03	ci left: 2.398151e-01	ci right 2.412317e-01	k: 336732	n:1400000
KS ci ratio: 9.928873e-02	ci left: 1.056913e-03	ci right 1.168025e-03	k: 1556	n:1400000
C16orf11   1400000 perm   1134 sec   (1234 perm/sec)   p_kst 1.111429e-03   p_cons 2.405229e-01   p_joint 9.457143e-04

Joint ci ratio: 1.126903e-01	ci left: 8.091190e-04	ci right 9.064253e-04	k: 1208	n:1410000
Cons ci ratio: 5.867177e-03	ci left: 2.397551e-01	ci right 2.411666e-01	k: 339049	n:1410000
KS ci ratio: 9.893986e-02	ci left: 1.057025e-03	ci right 1.167735e-03	k: 1567	n:1410000
C16orf11   1410000 perm   1149 sec   (1228 perm/sec)   p_kst 1.111348e-03   p_cons 2.404603e-01   p_joint 8.567376e-04

Joint ci ratio: 1.123655e-01	ci left: 8.082117e-04	ci right 9.051103e-04	k: 1215	n:1420000
Cons ci ratio: 5.846297e-03	ci left: 2.397691e-01	ci right 2.411756e-01	k: 341470	n:1420000
KS ci ratio: 9.853218e-02	ci left: 1.058510e-03	ci right 1.168893e-03	k: 1580	n:1420000
C16orf11   1420000 perm   1163 sec   (1221 perm/sec)   p_kst 1.112676e-03   p_cons 2.404718e-01   p_joint 8.556338e-04

Joint ci ratio: 1.118150e-01	ci left: 8.107163e-04	ci right 9.074076e-04	k: 1227	n:1430000
Cons ci ratio: 5.825783e-03	ci left: 2.397738e-01	ci right 2.411755e-01	k: 343878	n:1430000
KS ci ratio: 9.828394e-02	ci left: 1.056565e-03	ci right 1.166451e-03	k: 1588	n:1430000
C16orf11   1430000 perm   1178 sec   (1214 perm/sec)   p_kst 1.110490e-03   p_cons 2.404741e-01   p_joint 8.580420e-04

Joint ci ratio: 1.114978e-01	ci left: 8.098117e-04	ci right 9.061030e-04	k: 1234	n:1440000
Cons ci ratio: 5.805825e-03	ci left: 2.397570e-01	ci right 2.411537e-01	k: 346255	n:1440000
KS ci ratio: 9.779265e-02	ci left: 1.060066e-03	ci right 1.169734e-03	k: 1604	n:1440000
C16orf11   1440000 perm   1193 sec   (1208 perm/sec)   p_kst 1.113889e-03   p_cons 2.404549e-01   p_joint 8.569444e-04

Joint ci ratio: 1.114078e-01	ci left: 8.055675e-04	ci right 9.012718e-04	k: 1236	n:1450000
Cons ci ratio: 5.785678e-03	ci left: 2.397653e-01	ci right 2.411572e-01	k: 348668	n:1450000
KS ci ratio: 9.745926e-02	ci left: 1.060156e-03	ci right 1.169438e-03	k: 1615	n:1450000
C16orf11   1450000 perm   1207 sec   (1201 perm/sec)   p_kst 1.113793e-03   p_cons 2.404607e-01   p_joint 8.524138e-04

Joint ci ratio: 1.109157e-01	ci left: 8.073748e-04	ci right 9.028423e-04	k: 1247	n:1460000
Cons ci ratio: 5.765685e-03	ci left: 2.397768e-01	ci right 2.411639e-01	k: 351086	n:1460000
KS ci ratio: 9.698018e-02	ci left: 1.063588e-03	ci right 1.172653e-03	k: 1631	n:1460000
C16orf11   1460000 perm   1222 sec   (1195 perm/sec)   p_kst 1.117123e-03   p_cons 2.404699e-01   p_joint 8.541096e-04

Joint ci ratio: 1.106501e-01	ci left: 8.058509e-04	ci right 9.008953e-04	k: 1253	n:1470000
Cons ci ratio: 5.745385e-03	ci left: 2.398208e-01	ci right 2.412033e-01	k: 353552	n:1470000
KS ci ratio: 9.683216e-02	ci left: 1.059671e-03	ci right 1.168160e-03	k: 1636	n:1470000
C16orf11   1470000 perm   1237 sec   (1189 perm/sec)   p_kst 1.112925e-03   p_cons 2.405116e-01   p_joint 8.523810e-04

Joint ci ratio: 1.102115e-01	ci left: 8.069761e-04	ci right 9.017514e-04	k: 1263	n:1480000
Cons ci ratio: 5.726060e-03	ci left: 2.398157e-01	ci right 2.411935e-01	k: 355946	n:1480000
KS ci ratio: 9.644989e-02	ci left: 1.061083e-03	ci right 1.169263e-03	k: 1649	n:1480000
C16orf11   1480000 perm   1252 sec   (1182 perm/sec)   p_kst 1.114189e-03   p_cons 2.405041e-01   p_joint 8.533784e-04

Joint ci ratio: 1.095631e-01	ci left: 8.113507e-04	ci right 9.060430e-04	k: 1278	n:1490000
Cons ci ratio: 5.706844e-03	ci left: 2.398159e-01	ci right 2.411891e-01	k: 358348	n:1490000
KS ci ratio: 9.604320e-02	ci left: 1.063131e-03	ci right 1.171038e-03	k: 1663	n:1490000
C16orf11   1490000 perm   1267 sec   (1176 perm/sec)   p_kst 1.116107e-03   p_cons 2.405020e-01   p_joint 8.577181e-04

Joint ci ratio: 1.090948e-01	ci left: 8.130745e-04	ci right 9.075364e-04	k: 1289	n:1500000
Cons ci ratio: 5.688361e-03	ci left: 2.397816e-01	ci right 2.411501e-01	k: 360698	n:1500000
KS ci ratio: 9.564161e-02	ci left: 1.065153e-03	ci right 1.172788e-03	k: 1677	n:1500000
C16orf11   1500000 perm   1282 sec   (1170 perm/sec)   p_kst 1.118000e-03   p_cons 2.404653e-01   p_joint 8.593333e-04

Joint ci ratio: 1.088842e-01	ci left: 8.109109e-04	ci right 9.049278e-04	k: 1294	n:1510000
Cons ci ratio: 5.669480e-03	ci left: 2.397847e-01	ci right 2.411487e-01	k: 363104	n:1510000
KS ci ratio: 9.535793e-02	ci left: 1.064564e-03	ci right 1.171801e-03	k: 1687	n:1510000
C16orf11   1510000 perm   1297 sec   (1164 perm/sec)   p_kst 1.117219e-03   p_cons 2.404662e-01   p_joint 8.569536e-04

Joint ci ratio: 1.086329e-01	ci left: 8.094159e-04	ci right 9.030291e-04	k: 1300	n:1520000
Cons ci ratio: 5.650552e-03	ci left: 2.398030e-01	ci right 2.411625e-01	k: 365533	n:1520000
KS ci ratio: 9.507676e-02	ci left: 1.063982e-03	ci right 1.170828e-03	k: 1697	n:1520000
C16orf11   1520000 perm   1313 sec   (1158 perm/sec)   p_kst 1.116447e-03   p_cons 2.404822e-01   p_joint 8.552632e-04

Joint ci ratio: 1.080529e-01	ci left: 8.130281e-04	ci right 9.065250e-04	k: 1314	n:1530000
Cons ci ratio: 5.632055e-03	ci left: 2.398053e-01	ci right 2.411604e-01	k: 367938	n:1530000
KS ci ratio: 9.471482e-02	ci left: 1.065323e-03	ci right 1.171874e-03	k: 1710	n:1530000
C16orf11   1530000 perm   1328 sec   (1152 perm/sec)   p_kst 1.117647e-03   p_cons 2.404824e-01   p_joint 8.588235e-04

Joint ci ratio: 1.075631e-01	ci left: 8.153308e-04	ci right 9.086407e-04	k: 1326	n:1540000
Cons ci ratio: 5.614266e-03	ci left: 2.397733e-01	ci right 2.411238e-01	k: 370290	n:1540000
KS ci ratio: 9.424759e-02	ci left: 1.069184e-03	ci right 1.175564e-03	k: 1727	n:1540000
C16orf11   1540000 perm   1344 sec   (1146 perm/sec)   p_kst 1.121429e-03   p_cons 2.404481e-01   p_joint 8.610390e-04

Joint ci ratio: 1.072806e-01	ci left: 8.144654e-04	ci right 9.074159e-04	k: 1333	n:1550000
Cons ci ratio: 5.597130e-03	ci left: 2.397100e-01	ci right 2.410561e-01	k: 372593	n:1550000
KS ci ratio: 9.408455e-02	ci left: 1.066066e-03	ci right 1.171942e-03	k: 1733	n:1550000
C16orf11   1550000 perm   1360 sec   (1140 perm/sec)   p_kst 1.118065e-03   p_cons 2.403826e-01   p_joint 8.600000e-04

Joint ci ratio: 1.051715e-01	ci left: 8.429409e-04	ci right 9.371330e-04	k: 1387	n:1560000
Cons ci ratio: 5.578983e-03	ci left: 2.397238e-01	ci right 2.410656e-01	k: 375015	n:1560000
KS ci ratio: 9.368012e-02	ci left: 1.068622e-03	ci right 1.174270e-03	k: 1748	n:1560000
C16orf11   1560000 perm   1376 sec   (1134 perm/sec)   p_kst 1.120513e-03   p_cons 2.403942e-01   p_joint 8.891026e-04

Joint ci ratio: 1.049827e-01	ci left: 8.406728e-04	ci right 9.344325e-04	k: 1392	n:1570000
Cons ci ratio: 5.561313e-03	ci left: 2.397177e-01	ci right 2.410552e-01	k: 377406	n:1570000
KS ci ratio: 9.346670e-02	ci left: 1.066791e-03	ci right 1.172006e-03	k: 1756	n:1570000
C16orf11   1570000 perm   1392 sec   (1128 perm/sec)   p_kst 1.118471e-03   p_cons 2.403860e-01   p_joint 8.866242e-04

Joint ci ratio: 1.043476e-01	ci left: 8.458301e-04	ci right 9.395592e-04	k: 1409	n:1580000
Cons ci ratio: 5.543723e-03	ci left: 2.397174e-01	ci right 2.410506e-01	k: 379806	n:1580000
KS ci ratio: 9.293897e-02	ci left: 1.072403e-03	ci right 1.177541e-03	k: 1776	n:1580000
C16orf11   1580000 perm   1407 sec   (1123 perm/sec)   p_kst 1.124051e-03   p_cons 2.403835e-01   p_joint 8.917722e-04

Joint ci ratio: 1.056303e-01	ci left: 8.196876e-04	ci right 9.117058e-04	k: 1375	n:1590000
Cons ci ratio: 5.526023e-03	ci left: 2.397353e-01	ci right 2.410644e-01	k: 382235	n:1590000
KS ci ratio: 9.270457e-02	ci left: 1.071187e-03	ci right 1.175927e-03	k: 1785	n:1590000
C16orf11   1590000 perm   1423 sec   (1117 perm/sec)   p_kst 1.122642e-03   p_cons 2.403994e-01   p_joint 8.647799e-04

Joint ci ratio: 1.052866e-01	ci left: 8.200412e-04	ci right 9.117810e-04	k: 1384	n:1600000
Cons ci ratio: 5.509793e-03	ci left: 2.396668e-01	ci right 2.409916e-01	k: 384526	n:1600000
KS ci ratio: 9.252355e-02	ci left: 1.068766e-03	ci right 1.173054e-03	k: 1792	n:1600000
C16orf11   1600000 perm   1439 sec   (1112 perm/sec)   p_kst 1.120000e-03   p_cons 2.403288e-01   p_joint 8.650000e-04

Joint ci ratio: 1.047958e-01	ci left: 8.228103e-04	ci right 9.144042e-04	k: 1397	n:1610000
Cons ci ratio: 5.492919e-03	ci left: 2.396513e-01	ci right 2.409720e-01	k: 386901	n:1610000
KS ci ratio: 9.224105e-02	ci left: 1.068802e-03	ci right 1.172758e-03	k: 1803	n:1610000
C16orf11   1610000 perm   1455 sec   (1106 perm/sec)   p_kst 1.119876e-03   p_cons 2.403112e-01   p_joint 8.677019e-04

Joint ci ratio: 1.045344e-01	ci left: 8.219390e-04	ci right 9.131939e-04	k: 1404	n:1620000
Cons ci ratio: 5.474978e-03	ci left: 2.397175e-01	ci right 2.410341e-01	k: 389408	n:1620000
KS ci ratio: 9.193576e-02	ci left: 1.069441e-03	ci right 1.173096e-03	k: 1815	n:1620000
C16orf11   1620000 perm   1471 sec   (1101 perm/sec)   p_kst 1.120370e-03   p_cons 2.403753e-01   p_joint 8.666667e-04

Joint ci ratio: 9.910558e-02	ci left: 9.113644e-04	ci right 1.006987e-03	k: 1562	n:1630000
Cons ci ratio: 5.457890e-03	ci left: 2.397374e-01	ci right 2.410500e-01	k: 391841	n:1630000
KS ci ratio: 9.158334e-02	ci left: 1.071272e-03	ci right 1.174685e-03	k: 1829	n:1630000
C16orf11   1630000 perm   1488 sec   (1096 perm/sec)   p_kst 1.122086e-03   p_cons 2.403933e-01   p_joint 9.582822e-04

Outputting figure to mutsig2_images.part000000000020/C16orf11.2_1724_1630000_0.0011221_0.24039_0.00095828.png
                gene_name: C16orf11
               theta_stop: 0.099 
                    nperm: 1630000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.00096 
     ci_joint_bounds_left: 0.00091 
    ci_joint_bounds_right: 0.0010 

Current progress: 90 percent done.
C16orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
KS ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
C16orf45   10000 perm   1 sec   (6958 perm/sec)   p_kst 5.397000e-01   p_cons 4.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C16orf45.2_698_10000_0.5397_0.4423_1.png
                gene_name: C16orf45
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C16orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
KS ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
C16orf57   10000 perm   1 sec   (6937 perm/sec)   p_kst 3.706000e-01   p_cons 3.388000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf57.2_826_10000_0.3706_0.3388_0.4079.png
                gene_name: C16orf57
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 95 percent done.
C16orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
C16orf58   10000 perm   2 sec   (6311 perm/sec)   p_kst 4.950000e-02   p_cons 4.235000e-01   p_joint 4.912000e-01

Joint ci ratio: 6.626847e-02	ci left: 1.439433e-01	ci right 1.538590e-01	k: 2977	n:20000
Cons ci ratio: 3.203462e-02	ci left: 4.212284e-01	ci right 4.349925e-01	k: 8562	n:20000
KS ci ratio: 1.205662e-01	ci left: 4.716578e-02	ci right 5.326583e-02	k: 1003	n:20000
C16orf58   20000 perm   4 sec   (5589 perm/sec)   p_kst 5.015000e-02   p_cons 4.281000e-01   p_joint 1.488500e-01

Joint ci ratio: 3.704766e-02	ci left: 2.667051e-01	ci right 2.768058e-01	k: 8152	n:30000
Cons ci ratio: 2.735824e-02	ci left: 4.007017e-01	ci right 4.118498e-01	k: 12188	n:30000
KS ci ratio: 9.941953e-02	ci left: 4.681217e-02	ci right 5.174225e-02	k: 1477	n:30000
C16orf58   30000 perm   6 sec   (5297 perm/sec)   p_kst 4.923333e-02   p_cons 4.062667e-01   p_joint 2.717333e-01

Outputting figure to mutsig2_images.part000000000020/C16orf58.2_1459_30000_0.049233_0.40627_0.27173.png
                gene_name: C16orf58
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 98 percent done.
C16orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
C16orf63   10000 perm   1 sec   (7012 perm/sec)   p_kst 1.081000e-01   p_cons 5.586000e-01   p_joint 3.732000e-01

Joint ci ratio: 4.956974e-02	ci left: 2.322601e-01	ci right 2.441161e-01	k: 4763	n:20000
Cons ci ratio: 2.453597e-02	ci left: 5.537382e-01	ci right 5.675441e-01	k: 11213	n:20000
KS ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
C16orf63   20000 perm   3 sec   (6047 perm/sec)   p_kst 1.054500e-01   p_cons 5.606500e-01   p_joint 2.381500e-01

Outputting figure to mutsig2_images.part000000000020/C16orf63.2_545_20000_0.10545_0.56065_0.23815.png
                gene_name: C16orf63
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000020
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 20 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4421762: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000021> was used as the working directory.
Started at Wed Oct 24 17:32:56 2012
Results reported at Wed Oct 24 17:42:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000021.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000021.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 21  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000021.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    553.98 sec.
    Max Memory :      5336 MB
    Max Swap   :      7616 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
21
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 21
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 21: processing genes 1810 - 1900
Calculating significance of each gene.
Using projection method.
1810	C16orf68	8.673320e-01
1811	C16orf7	8.603050e-01
1812	C16orf70	5.134028e-01
1813	C16orf71	9.209494e-01
1814	C16orf72	4.460228e-01
1815	C16orf73	1
1816	C16orf75	1
1817	C16orf78	1
1818	C16orf79	7.674709e-01
1819	C16orf80	6.632491e-01
1820	C16orf82	1.459005e-01
1821	C16orf86	1
1822	C16orf87	2.858398e-01
1823	C16orf88	8.402898e-01
1824	C16orf89	1
1825	C16orf90	1
1826	C16orf91	5.206069e-01
1827	C16orf92	1.834908e-01
1828	C16orf93	5.598241e-01
1829	C17orf100	1
1830	C17orf101	7.067046e-01
1831	C17orf102	1.833446e-01
1832	C17orf103	8.547048e-02
1833	C17orf104	1
1834	C17orf108	1
1835	C17orf28	9.815229e-01
1836	C17orf37	2.337483e-01
1837	C17orf39	6.003130e-01
1838	C17orf42	1
1839	C17orf46	4.990335e-01
1840	C17orf47	1.219454e-02
1841	C17orf48	4.152929e-01
1842	C17orf49	1
1843	C17orf50	1
1844	C17orf53	1.583507e-01
1845	C17orf55	1
1846	C17orf56	4.308336e-01
1847	C17orf57	4.793460e-01
1848	C17orf58	2.976185e-01
1849	C17orf59	1
1850	C17orf60	1
1851	C17orf61	1
1852	C17orf62	1
1853	C17orf63	1.172190e-04
1854	C17orf64	1.004578e-01
1855	C17orf65	1
1856	C17orf66	5.751361e-01
1857	C17orf67	3.544120e-01
1858	C17orf68	9.893000e-01
1859	C17orf70	9.586472e-01
1860	C17orf71	8.643163e-01
1861	C17orf74	9.218905e-01
1862	C17orf75	1
1863	C17orf76	6.122454e-01
1864	C17orf77	2.576190e-01
1865	C17orf78	1.670732e-01
1866	C17orf79	1
1867	C17orf80	1
1868	C17orf81	4.836948e-01
1869	C17orf82	1
1870	C17orf85	1
1871	C17orf87	1
1872	C17orf90	5.499276e-01
1873	C17orf95	1.474912e-01
1874	C17orf98	7.716613e-02
1875	C18orf1	5.677775e-02
1876	C18orf10	1
1877	C18orf19	4.642187e-01
1878	C18orf21	1
1879	C18orf22	1
1880	C18orf25	1
1881	C18orf26	6.793393e-01
1882	C18orf32	1
1883	C18orf34	2.699607e-07
1884	C18orf45	1
1885	C18orf54	1
1886	C18orf55	7.960468e-01
1887	C18orf56	1
1888	C18orf62	1
1889	C18orf8	9.250159e-01
1890	C19orf10	1
1891	C19orf12	1
1892	C19orf18	6.181162e-02
1893	C19orf2	1.756189e-01
1894	C19orf21	9.729649e-01
1895	C19orf22	1
1896	C19orf26	1
1897	C19orf28	3.850869e-01
1898	C19orf29	5.667350e-01
1899	C19orf33	1
1900	C19orf35	5.589877e-01
Done

Running MutSig 2:
Scatter job 21: processing genes 1810 - 1900
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C18orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
C18orf34   10000 perm   2 sec   (4916 perm/sec)   p_kst 8.046000e-01   p_cons 4.965000e-01   p_joint 9.401000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf34.23_2688_10000_0.8046_0.4965_0.9401.png
                gene_name: C18orf34
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 3 percent done.
C17orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714820e-02	ci left: 8.320551e-01	ci right 8.465466e-01	k: 8394	n:10000
Cons ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
C17orf47   10000 perm   2 sec   (5587 perm/sec)   p_kst 4.863000e-01   p_cons 4.664000e-01   p_joint 8.394000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf47.9_1721_10000_0.4863_0.4664_0.8394.png
                gene_name: C17orf47
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
C17orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
Cons ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
KS ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
C17orf57   10000 perm   2 sec   (5496 perm/sec)   p_kst 4.281000e-01   p_cons 2.931000e-01   p_joint 4.802000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf57.7_3010_10000_0.4281_0.2931_0.4802.png
                gene_name: C17orf57
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 9 percent done.
C17orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
Cons ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
KS ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
C17orf53   10000 perm   2 sec   (5685 perm/sec)   p_kst 9.613000e-01   p_cons 4.970000e-01   p_joint 8.556000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf53.6_1984_10000_0.9613_0.497_0.8556.png
                gene_name: C17orf53
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 12 percent done.
C18orf1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
KS ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
C18orf1   10000 perm   2 sec   (6648 perm/sec)   p_kst 7.000000e-03   p_cons 8.282000e-01   p_joint 4.300000e-02

Joint ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
Cons ci ratio: 1.218339e-02	ci left: 8.329208e-01	ci right 8.431807e-01	k: 16762	n:20000
KS ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
C18orf1   20000 perm   3 sec   (5861 perm/sec)   p_kst 5.850000e-03   p_cons 8.381000e-01   p_joint 3.245000e-02

Joint ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
Cons ci ratio: 9.969512e-03	ci left: 8.332762e-01	ci right 8.416584e-01	k: 25125	n:30000
KS ci ratio: 2.904862e-01	ci left: 5.157558e-03	ci right 6.940142e-03	k: 180	n:30000
C18orf1   30000 perm   5 sec   (5569 perm/sec)   p_kst 6.000000e-03   p_cons 8.375000e-01   p_joint 2.570000e-02

Joint ci ratio: 1.417882e-01	ci left: 1.741914e-02	ci right 2.010137e-02	k: 749	n:40000
Cons ci ratio: 8.682891e-03	ci left: 8.322841e-01	ci right 8.395671e-01	k: 33438	n:40000
KS ci ratio: 2.522715e-01	ci left: 5.243302e-03	ci right 6.779744e-03	k: 239	n:40000
C18orf1   40000 perm   7 sec   (5357 perm/sec)   p_kst 5.975000e-03   p_cons 8.359500e-01   p_joint 1.872500e-02

Joint ci ratio: 1.112249e-01	ci left: 2.289018e-02	ci right 2.560544e-02	k: 1211	n:50000
Cons ci ratio: 7.757398e-03	ci left: 8.329870e-01	ci right 8.394939e-01	k: 41813	n:50000
KS ci ratio: 2.248862e-01	ci left: 5.360775e-03	ci right 6.737522e-03	k: 301	n:50000
C18orf1   50000 perm   10 sec   (5229 perm/sec)   p_kst 6.020000e-03   p_cons 8.362600e-01   p_joint 2.422000e-02

Joint ci ratio: 1.069906e-01	ci left: 2.071130e-02	ci right 2.306860e-02	k: 1312	n:60000
Cons ci ratio: 7.083032e-03	ci left: 8.332141e-01	ci right 8.391533e-01	k: 50172	n:60000
KS ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
C18orf1   60000 perm   12 sec   (5119 perm/sec)   p_kst 5.833333e-03   p_cons 8.362000e-01   p_joint 2.186667e-02

Joint ci ratio: 9.911481e-02	ci left: 2.077274e-02	ci right 2.295286e-02	k: 1529	n:70000
Cons ci ratio: 6.567513e-03	ci left: 8.330202e-01	ci right 8.385233e-01	k: 58505	n:70000
KS ci ratio: 1.947048e-01	ci left: 5.196508e-03	ci right 6.330765e-03	k: 402	n:70000
C18orf1   70000 perm   14 sec   (5014 perm/sec)   p_kst 5.742857e-03   p_cons 8.357857e-01   p_joint 2.184286e-02

Joint ci ratio: 9.454192e-02	ci left: 2.004199e-02	ci right 2.204296e-02	k: 1682	n:80000
Cons ci ratio: 6.143015e-03	ci left: 8.332145e-01	ci right 8.383611e-01	k: 66864	n:80000
KS ci ratio: 1.824432e-01	ci left: 5.213930e-03	ci right 6.272398e-03	k: 458	n:80000
C18orf1   80000 perm   16 sec   (4920 perm/sec)   p_kst 5.725000e-03   p_cons 8.358000e-01   p_joint 2.102500e-02

Joint ci ratio: 1.111886e-01	ci left: 1.286426e-02	ci right 1.438955e-02	k: 1225	n:90000
Cons ci ratio: 6.094389e-03	ci left: 8.188147e-01	ci right 8.238312e-01	k: 73920	n:90000
KS ci ratio: 1.696100e-01	ci left: 5.399438e-03	ci right 6.410585e-03	k: 530	n:90000
C18orf1   90000 perm   19 sec   (4833 perm/sec)   p_kst 5.888889e-03   p_cons 8.213333e-01   p_joint 1.361111e-02

Joint ci ratio: 1.144251e-01	ci left: 1.093582e-02	ci right 1.227273e-02	k: 1159	n:100000
Cons ci ratio: 5.784267e-03	ci left: 8.188107e-01	ci right 8.235706e-01	k: 82120	n:100000
KS ci ratio: 1.617356e-01	ci left: 5.367520e-03	ci right 6.321485e-03	k: 583	n:100000
C18orf1   100000 perm   21 sec   (4751 perm/sec)   p_kst 5.830000e-03   p_cons 8.212000e-01   p_joint 1.159000e-02

Joint ci ratio: 9.447724e-02	ci left: 1.468057e-02	ci right 1.614514e-02	k: 1694	n:110000
Cons ci ratio: 5.517298e-03	ci left: 8.188038e-01	ci right 8.233429e-01	k: 90319	n:110000
KS ci ratio: 1.551101e-01	ci left: 5.324815e-03	ci right 6.228815e-03	k: 634	n:110000
C18orf1   110000 perm   24 sec   (4678 perm/sec)   p_kst 5.763636e-03   p_cons 8.210818e-01   p_joint 1.540000e-02

Joint ci ratio: 7.958515e-02	ci left: 1.902740e-02	ci right 2.061259e-02	k: 2377	n:120000
Cons ci ratio: 5.281332e-03	ci left: 8.189614e-01	ci right 8.233064e-01	k: 98537	n:120000
KS ci ratio: 1.479414e-01	ci left: 5.386194e-03	ci right 6.254616e-03	k: 697	n:120000
C18orf1   120000 perm   26 sec   (4607 perm/sec)   p_kst 5.808333e-03   p_cons 8.211417e-01   p_joint 1.980833e-02

Joint ci ratio: 7.892325e-02	ci left: 1.788755e-02	ci right 1.936480e-02	k: 2420	n:130000
Cons ci ratio: 5.069276e-03	ci left: 8.193301e-01	ci right 8.235017e-01	k: 106785	n:130000
KS ci ratio: 1.410318e-01	ci left: 5.490895e-03	ci right 6.331374e-03	k: 767	n:130000
C18orf1   130000 perm   29 sec   (4539 perm/sec)   p_kst 5.900000e-03   p_cons 8.214231e-01   p_joint 1.861538e-02

Joint ci ratio: 8.088458e-02	ci left: 1.583217e-02	ci right 1.717368e-02	k: 2309	n:140000
Cons ci ratio: 4.886805e-03	ci left: 8.192902e-01	ci right 8.233108e-01	k: 114983	n:140000
KS ci ratio: 1.364067e-01	ci left: 5.464118e-03	ci right 6.270840e-03	k: 820	n:140000
C18orf1   140000 perm   31 sec   (4469 perm/sec)   p_kst 5.857143e-03   p_cons 8.213071e-01   p_joint 1.649286e-02

Joint ci ratio: 8.159607e-02	ci left: 1.453464e-02	ci right 1.577754e-02	k: 2272	n:150000
Cons ci ratio: 4.721322e-03	ci left: 8.193450e-01	ci right 8.232292e-01	k: 123194	n:150000
KS ci ratio: 1.331311e-01	ci left: 5.363942e-03	ci right 6.135351e-03	k: 861	n:150000
C18orf1   150000 perm   34 sec   (4391 perm/sec)   p_kst 5.740000e-03   p_cons 8.212933e-01   p_joint 1.514667e-02

Joint ci ratio: 7.679232e-02	ci left: 1.540924e-02	ci right 1.664589e-02	k: 2563	n:160000
Cons ci ratio: 4.570809e-03	ci left: 8.194453e-01	ci right 8.232056e-01	k: 131413	n:160000
KS ci ratio: 1.288661e-01	ci left: 5.379320e-03	ci right 6.126261e-03	k: 919	n:160000
C18orf1   160000 perm   37 sec   (4317 perm/sec)   p_kst 5.743750e-03   p_cons 8.213312e-01   p_joint 1.601875e-02

Joint ci ratio: 7.616824e-02	ci left: 1.475649e-02	ci right 1.593071e-02	k: 2607	n:170000
Cons ci ratio: 4.437029e-03	ci left: 8.193228e-01	ci right 8.229721e-01	k: 139596	n:170000
KS ci ratio: 1.256993e-01	ci left: 5.330549e-03	ci right 6.051172e-03	k: 966	n:170000
C18orf1   170000 perm   40 sec   (4246 perm/sec)   p_kst 5.682353e-03   p_cons 8.211529e-01   p_joint 1.533529e-02

Joint ci ratio: 6.924144e-02	ci left: 1.688832e-02	ci right 1.810506e-02	k: 3148	n:180000
Cons ci ratio: 4.309449e-03	ci left: 8.195501e-01	ci right 8.230951e-01	k: 147839	n:180000
KS ci ratio: 1.223311e-01	ci left: 5.325100e-03	ci right 6.024299e-03	k: 1020	n:180000
C18orf1   180000 perm   43 sec   (4183 perm/sec)   p_kst 5.666667e-03   p_cons 8.213278e-01   p_joint 1.748889e-02

Joint ci ratio: 6.842805e-02	ci left: 1.639761e-02	ci right 1.756456e-02	k: 3225	n:190000
Cons ci ratio: 4.196335e-03	ci left: 8.194695e-01	ci right 8.229207e-01	k: 156028	n:190000
KS ci ratio: 1.191085e-01	ci left: 5.330669e-03	ci right 6.010863e-03	k: 1076	n:190000
C18orf1   190000 perm   46 sec   (4120 perm/sec)   p_kst 5.663158e-03   p_cons 8.212000e-01   p_joint 1.697368e-02

Joint ci ratio: 6.765213e-02	ci left: 1.595114e-02	ci right 1.707294e-02	k: 3301	n:200000
Cons ci ratio: 4.092587e-03	ci left: 8.193328e-01	ci right 8.226979e-01	k: 164204	n:200000
KS ci ratio: 1.161794e-01	ci left: 5.331043e-03	ci right 5.993408e-03	k: 1131	n:200000
C18orf1   200000 perm   49 sec   (4060 perm/sec)   p_kst 5.655000e-03   p_cons 8.210200e-01   p_joint 1.650500e-02

Joint ci ratio: 6.811005e-02	ci left: 1.499939e-02	ci right 1.606167e-02	k: 3260	n:210000
Cons ci ratio: 3.994810e-03	ci left: 8.193106e-01	ci right 8.225948e-01	k: 172401	n:210000
KS ci ratio: 1.133124e-01	ci left: 5.345450e-03	ci right 5.992119e-03	k: 1189	n:210000
C18orf1   210000 perm   53 sec   (4000 perm/sec)   p_kst 5.661905e-03   p_cons 8.209571e-01   p_joint 1.552381e-02

Joint ci ratio: 6.699659e-02	ci left: 1.480910e-02	ci right 1.584009e-02	k: 3370	n:220000
Cons ci ratio: 3.904264e-03	ci left: 8.192502e-01	ci right 8.224595e-01	k: 180589	n:220000
KS ci ratio: 1.106477e-01	ci left: 5.358729e-03	ci right 5.990766e-03	k: 1247	n:220000
C18orf1   220000 perm   56 sec   (3943 perm/sec)   p_kst 5.668182e-03   p_cons 8.208591e-01   p_joint 1.531818e-02

Joint ci ratio: 6.666887e-02	ci left: 1.431474e-02	ci right 1.530624e-02	k: 3405	n:230000
Cons ci ratio: 3.818817e-03	ci left: 8.192570e-01	ci right 8.223958e-01	k: 188791	n:230000
KS ci ratio: 1.077073e-01	ci left: 5.417558e-03	ci right 6.038476e-03	k: 1316	n:230000
C18orf1   230000 perm   59 sec   (3889 perm/sec)   p_kst 5.721739e-03   p_cons 8.208304e-01   p_joint 1.480435e-02

Joint ci ratio: 6.982356e-02	ci left: 1.250967e-02	ci right 1.341881e-02	k: 3110	n:240000
Cons ci ratio: 3.740810e-03	ci left: 8.191008e-01	ci right 8.221748e-01	k: 196954	n:240000
KS ci ratio: 1.048754e-01	ci left: 5.483861e-03	ci right 6.094834e-03	k: 1388	n:240000
C18orf1   240000 perm   63 sec   (3839 perm/sec)   p_kst 5.783333e-03   p_cons 8.206417e-01   p_joint 1.295833e-02

Joint ci ratio: 6.912544e-02	ci left: 1.226079e-02	ci right 1.314257e-02	k: 3174	n:250000
Cons ci ratio: 3.664952e-03	ci left: 8.191545e-01	ci right 8.221661e-01	k: 205166	n:250000
KS ci ratio: 1.028593e-01	ci left: 5.478791e-03	ci right 6.076755e-03	k: 1443	n:250000
C18orf1   250000 perm   66 sec   (3790 perm/sec)   p_kst 5.772000e-03   p_cons 8.206640e-01   p_joint 1.269600e-02

Joint ci ratio: 6.780388e-02	ci left: 1.226175e-02	ci right 1.312608e-02	k: 3299	n:260000
Cons ci ratio: 3.599304e-03	ci left: 8.187300e-01	ci right 8.216860e-01	k: 213255	n:260000
KS ci ratio: 1.006182e-01	ci left: 5.511711e-03	ci right 6.099387e-03	k: 1508	n:260000
C18orf1   260000 perm   69 sec   (3742 perm/sec)   p_kst 5.800000e-03   p_cons 8.202115e-01   p_joint 1.268846e-02

Joint ci ratio: 6.731587e-02	ci left: 1.198597e-02	ci right 1.282454e-02	k: 3348	n:270000
Cons ci ratio: 3.531405e-03	ci left: 8.188094e-01	ci right 8.217097e-01	k: 221471	n:270000
KS ci ratio: 9.851748e-02	ci left: 5.542324e-03	ci right 6.120213e-03	k: 1573	n:270000
C18orf1   270000 perm   73 sec   (3695 perm/sec)   p_kst 5.825926e-03   p_cons 8.202630e-01   p_joint 1.240000e-02

Outputting figure to mutsig2_images.part000000000021/C18orf1.5_1022_270000_0.0058259_0.82026_0.0124.png
                gene_name: C18orf1
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 15 percent done.
C19orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
Cons ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KS ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
C19orf2   10000 perm   2 sec   (6641 perm/sec)   p_kst 1.255000e-01   p_cons 8.843000e-01   p_joint 3.441000e-01

Joint ci ratio: 4.546763e-02	ci left: 2.647494e-01	ci right 2.771173e-01	k: 5418	n:20000
Cons ci ratio: 1.027556e-02	ci left: 8.746032e-01	ci right 8.836862e-01	k: 17584	n:20000
KS ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
C19orf2   20000 perm   3 sec   (5914 perm/sec)   p_kst 1.280500e-01   p_cons 8.792000e-01   p_joint 2.709000e-01

Outputting figure to mutsig2_images.part000000000021/C19orf2.5_1652_20000_0.12805_0.8792_0.2709.png
                gene_name: C19orf2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 18 percent done.
C16orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.491783e-02	ci left: 7.032156e-01	ci right 7.210607e-01	k: 7122	n:10000
Cons ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
KS ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
C16orf70   10000 perm   2 sec   (6224 perm/sec)   p_kst 7.389000e-01   p_cons 2.063000e-01   p_joint 7.122000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf70.4_1333_10000_0.7389_0.2063_0.7122.png
                gene_name: C16orf70
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 21 percent done.
C17orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
KS ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
C17orf46   10000 perm   1 sec   (7093 perm/sec)   p_kst 1.562000e-01   p_cons 7.411000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf46.4_1175_10000_0.1562_0.7411_0.3267.png
                gene_name: C17orf46
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 24 percent done.
C17orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
Cons ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
KS ci ratio: 5.251744e-02	ci left: 3.482980e-01	ci right 3.671849e-01	k: 3577	n:10000
C17orf71   10000 perm   2 sec   (5938 perm/sec)   p_kst 3.577000e-01   p_cons 1.490000e-01   p_joint 2.998000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf71.4_2992_10000_0.3577_0.149_0.2998.png
                gene_name: C17orf71
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
C17orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.304807e-02	ci left: 7.344164e-01	ci right 7.516418e-01	k: 7431	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
C17orf74   10000 perm   1 sec   (6762 perm/sec)   p_kst 3.467000e-01   p_cons 4.908000e-01   p_joint 7.431000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf74.4_1518_10000_0.3467_0.4908_0.7431.png
                gene_name: C17orf74
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 30 percent done.
C19orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
Cons ci ratio: 1.187538e-02	ci left: 9.103913e-01	ci right 9.213650e-01	k: 9160	n:10000
KS ci ratio: 5.414471e-02	ci left: 3.344873e-01	ci right 3.532038e-01	k: 3438	n:10000
C19orf28   10000 perm   2 sec   (5583 perm/sec)   p_kst 3.438000e-01   p_cons 9.160000e-01   p_joint 5.665000e-01

Outputting figure to mutsig2_images.part000000000021/C19orf28.4_1690_10000_0.3438_0.916_0.5665.png
                gene_name: C19orf28
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 33 percent done.
C17orf63
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 36 percent done.
C17orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 1.161133e-02	ci left: 9.138916e-01	ci right 9.246627e-01	k: 9194	n:10000
KS ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
C17orf66   10000 perm   2 sec   (6553 perm/sec)   p_kst 3.235000e-01   p_cons 9.194000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf66.3_1773_10000_0.3235_0.9194_0.474.png
                gene_name: C17orf66
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
C17orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
Cons ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KS ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
C17orf68   10000 perm   2 sec   (5784 perm/sec)   p_kst 2.122000e-01   p_cons 1.175000e-01   p_joint 8.280000e-02

Joint ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
Cons ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
KS ci ratio: 5.301124e-02	ci left: 2.089766e-01	ci right 2.204065e-01	k: 4293	n:20000
C17orf68   20000 perm   4 sec   (5217 perm/sec)   p_kst 2.146500e-01   p_cons 1.166500e-01   p_joint 6.100000e-02

Joint ci ratio: 5.802700e-02	ci left: 1.281888e-01	ci right 1.358826e-01	k: 3960	n:30000
Cons ci ratio: 5.915927e-02	ci left: 1.238770e-01	ci right 1.314620e-01	k: 3829	n:30000
KS ci ratio: 4.335652e-02	ci left: 2.094695e-01	ci right 2.187860e-01	k: 6423	n:30000
C17orf68   30000 perm   6 sec   (4890 perm/sec)   p_kst 2.141000e-01   p_cons 1.276333e-01   p_joint 1.320000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf68.3_3746_30000_0.2141_0.12763_0.132.png
                gene_name: C17orf68
               theta_stop: 0.059 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
C17orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
C17orf70   10000 perm   2 sec   (6341 perm/sec)   p_kst 3.720000e-02   p_cons 8.679000e-01   p_joint 1.422000e-01

Joint ci ratio: 6.898551e-02	ci left: 1.341840e-01	ci right 1.438212e-01	k: 2779	n:20000
Cons ci ratio: 1.132577e-02	ci left: 8.520207e-01	ci right 8.617752e-01	k: 17139	n:20000
KS ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
C17orf70   20000 perm   3 sec   (5740 perm/sec)   p_kst 3.860000e-02   p_cons 8.569500e-01   p_joint 1.389500e-01

Joint ci ratio: 6.652415e-02	ci left: 1.002719e-01	ci right 1.072050e-01	k: 3111	n:30000
Cons ci ratio: 9.135705e-03	ci left: 8.559209e-01	ci right 8.638093e-01	k: 25797	n:30000
KS ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
C17orf70   30000 perm   5 sec   (5457 perm/sec)   p_kst 3.796667e-02   p_cons 8.599000e-01   p_joint 1.037000e-01

Joint ci ratio: 4.568461e-02	ci left: 1.518870e-01	ci right 1.590131e-01	k: 6217	n:40000
Cons ci ratio: 7.919860e-03	ci left: 8.562074e-01	ci right 8.630403e-01	k: 34386	n:40000
KS ci ratio: 9.323129e-02	ci left: 4.034835e-02	ci right 4.431844e-02	k: 1692	n:40000
C17orf70   40000 perm   8 sec   (5278 perm/sec)   p_kst 4.230000e-02   p_cons 8.596500e-01   p_joint 1.554250e-01

Outputting figure to mutsig2_images.part000000000021/C17orf70.3_2682_40000_0.0423_0.85965_0.15543.png
                gene_name: C17orf70
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 45 percent done.
C17orf81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
Cons ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
C17orf81   10000 perm   1 sec   (6863 perm/sec)   p_kst 7.794000e-01   p_cons 8.503000e-01   p_joint 9.707000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf81.3_1088_10000_0.7794_0.8503_0.9707.png
                gene_name: C17orf81
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 48 percent done.
C17orf98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
KS ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
C17orf98   10000 perm   1 sec   (7146 perm/sec)   p_kst 9.254000e-01   p_cons 1.350000e-02   p_joint 1.725000e-01

Joint ci ratio: 5.365622e-02	ci left: 2.049666e-01	ci right 2.163177e-01	k: 4212	n:20000
Cons ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
KS ci ratio: 8.130995e-03	ci left: 9.169709e-01	ci right 9.245063e-01	k: 18416	n:20000
C17orf98   20000 perm   3 sec   (6247 perm/sec)   p_kst 9.208000e-01   p_cons 1.400000e-02   p_joint 2.106000e-01

Joint ci ratio: 4.046993e-02	ci left: 2.333885e-01	ci right 2.430622e-01	k: 7146	n:30000
Cons ci ratio: 1.878983e-01	ci left: 1.295527e-02	ci right 1.567332e-02	k: 428	n:30000
KS ci ratio: 6.735039e-03	ci left: 9.155161e-01	ci right 9.217358e-01	k: 27560	n:30000
C17orf98   30000 perm   5 sec   (5970 perm/sec)   p_kst 9.186667e-01   p_cons 1.426667e-02   p_joint 2.382000e-01

Joint ci ratio: 3.247721e-02	ci left: 2.626194e-01	ci right 2.713144e-01	k: 10678	n:40000
Cons ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
KS ci ratio: 5.819500e-03	ci left: 9.162832e-01	ci right 9.216558e-01	k: 36760	n:40000
C17orf98   40000 perm   7 sec   (5781 perm/sec)   p_kst 9.190000e-01   p_cons 1.392500e-02   p_joint 2.669500e-01

Joint ci ratio: 3.015821e-02	ci left: 2.487362e-01	ci right 2.563725e-01	k: 12627	n:50000
Cons ci ratio: 1.456497e-01	ci left: 1.323906e-02	ci right 1.533789e-02	k: 713	n:50000
KS ci ratio: 5.191017e-03	ci left: 9.169795e-01	ci right 9.217717e-01	k: 45970	n:50000
C17orf98   50000 perm   9 sec   (5628 perm/sec)   p_kst 9.194000e-01   p_cons 1.426000e-02   p_joint 2.525400e-01

Joint ci ratio: 2.654978e-02	ci left: 2.629487e-01	ci right 2.700405e-01	k: 15989	n:60000
Cons ci ratio: 1.330226e-01	ci left: 1.331688e-02	ci right 1.523053e-02	k: 855	n:60000
KS ci ratio: 4.719456e-03	ci left: 9.178005e-01	ci right 9.221587e-01	k: 55200	n:60000
C17orf98   60000 perm   11 sec   (5499 perm/sec)   p_kst 9.200000e-01   p_cons 1.425000e-02   p_joint 2.664833e-01

Joint ci ratio: 2.570839e-02	ci left: 2.461128e-01	ci right 2.525366e-01	k: 17452	n:70000
Cons ci ratio: 1.236375e-01	ci left: 1.328117e-02	ci right 1.504516e-02	k: 990	n:70000
KS ci ratio: 4.365507e-03	ci left: 9.180957e-01	ci right 9.221265e-01	k: 64409	n:70000
C17orf98   70000 perm   13 sec   (5382 perm/sec)   p_kst 9.201286e-01   p_cons 1.414286e-02   p_joint 2.493143e-01

Joint ci ratio: 2.498212e-02	ci left: 2.323889e-01	ci right 2.382803e-01	k: 18826	n:80000
Cons ci ratio: 1.167324e-01	ci left: 1.308799e-02	ci right 1.472254e-02	k: 1111	n:80000
KS ci ratio: 4.087791e-03	ci left: 9.180733e-01	ci right 9.218462e-01	k: 73598	n:80000
C17orf98   80000 perm   15 sec   (5268 perm/sec)   p_kst 9.199750e-01   p_cons 1.388750e-02   p_joint 2.353250e-01

Joint ci ratio: 3.408451e-02	ci left: 1.259451e-01	ci right 1.303233e-01	k: 11531	n:90000
Cons ci ratio: 1.094810e-01	ci left: 1.327498e-02	ci right 1.482324e-02	k: 1263	n:90000
KS ci ratio: 3.844890e-03	ci left: 9.185339e-01	ci right 9.220834e-01	k: 82829	n:90000
C17orf98   90000 perm   17 sec   (5163 perm/sec)   p_kst 9.203222e-01   p_cons 1.403333e-02   p_joint 1.281222e-01

Joint ci ratio: 3.241866e-02	ci left: 1.254883e-01	ci right 1.296334e-01	k: 12755	n:100000
Cons ci ratio: 1.042947e-01	ci left: 1.320298e-02	ci right 1.466541e-02	k: 1392	n:100000
KS ci ratio: 3.646128e-03	ci left: 9.186850e-01	ci right 9.220506e-01	k: 92038	n:100000
C17orf98   100000 perm   20 sec   (5067 perm/sec)   p_kst 9.203800e-01   p_cons 1.392000e-02   p_joint 1.275500e-01

Joint ci ratio: 3.099563e-02	ci left: 1.249744e-01	ci right 1.289180e-01	k: 13963	n:110000
Cons ci ratio: 9.931961e-02	ci left: 1.326964e-02	ci right 1.466525e-02	k: 1535	n:110000
KS ci ratio: 3.467975e-03	ci left: 9.191242e-01	ci right 9.223263e-01	k: 101281	n:110000
C17orf98   110000 perm   22 sec   (4977 perm/sec)   p_kst 9.207364e-01   p_cons 1.395455e-02   p_joint 1.269364e-01

Outputting figure to mutsig2_images.part000000000021/C17orf98.3_477_110000_0.92074_0.013955_0.12694.png
                gene_name: C17orf98
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
C18orf8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
C18orf8   10000 perm   2 sec   (6627 perm/sec)   p_kst 3.813000e-01   p_cons 3.073000e-01   p_joint 3.481000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf8.3_2054_10000_0.3813_0.3073_0.3481.png
                gene_name: C18orf8
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 55 percent done.
C19orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
KS ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
C19orf18   10000 perm   1 sec   (7287 perm/sec)   p_kst 1.430000e-01   p_cons 2.200000e-03   p_joint 3.000000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 6.729385e-02	ci left: 1.401471e-01	ci right 1.499564e-01	k: 2900	n:20000
C19orf18   20000 perm   3 sec   (6447 perm/sec)   p_kst 1.450000e-01   p_cons 2.850000e-03   p_joint 1.590000e-02

Joint ci ratio: 7.971035e-02	ci left: 7.161873e-02	ci right 7.759730e-02	k: 2237	n:30000
Cons ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
KS ci ratio: 5.583013e-02	ci left: 1.371789e-01	ci right 1.450907e-01	k: 4233	n:30000
C19orf18   30000 perm   5 sec   (6127 perm/sec)   p_kst 1.411000e-01   p_cons 3.200000e-03   p_joint 7.456667e-02

Joint ci ratio: 8.900463e-02	ci left: 4.418782e-02	ci right 4.832838e-02	k: 1849	n:40000
Cons ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
KS ci ratio: 4.830728e-02	ci left: 1.379248e-01	ci right 1.447774e-01	k: 5653	n:40000
C19orf18   40000 perm   7 sec   (5920 perm/sec)   p_kst 1.413250e-01   p_cons 3.075000e-03   p_joint 4.622500e-02

Joint ci ratio: 8.109957e-02	ci left: 4.282674e-02	ci right 4.646636e-02	k: 2231	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 4.329843e-02	ci left: 1.377821e-01	ci right 1.438997e-01	k: 7041	n:50000
C19orf18   50000 perm   9 sec   (5759 perm/sec)   p_kst 1.408200e-01   p_cons 3.100000e-03   p_joint 4.462000e-02

Joint ci ratio: 8.035511e-02	ci left: 3.661494e-02	ci right 3.969661e-02	k: 2288	n:60000
Cons ci ratio: 2.760297e-01	ci left: 2.887968e-03	ci right 3.827751e-03	k: 200	n:60000
KS ci ratio: 3.953791e-02	ci left: 1.379765e-01	ci right 1.435583e-01	k: 8445	n:60000
C19orf18   60000 perm   11 sec   (5616 perm/sec)   p_kst 1.407500e-01   p_cons 3.333333e-03   p_joint 3.813333e-02

Joint ci ratio: 7.434382e-02	ci left: 3.677805e-02	ci right 3.963183e-02	k: 2673	n:70000
Cons ci ratio: 2.574893e-01	ci left: 2.875340e-03	ci right 3.738073e-03	k: 230	n:70000
KS ci ratio: 3.660430e-02	ci left: 1.381887e-01	ci right 1.433554e-01	k: 9853	n:70000
C19orf18   70000 perm   13 sec   (5483 perm/sec)   p_kst 1.407571e-01   p_cons 3.285714e-03   p_joint 3.818571e-02

Joint ci ratio: 7.205569e-02	ci left: 3.438805e-02	ci right 3.697076e-02	k: 2853	n:80000
Cons ci ratio: 2.413184e-01	ci left: 2.890947e-03	ci right 3.695740e-03	k: 262	n:80000
KS ci ratio: 3.427158e-02	ci left: 1.381360e-01	ci right 1.429651e-01	k: 11243	n:80000
C19orf18   80000 perm   15 sec   (5362 perm/sec)   p_kst 1.405375e-01   p_cons 3.275000e-03   p_joint 3.566250e-02

Joint ci ratio: 6.678653e-02	ci left: 3.563404e-02	ci right 3.810703e-02	k: 3317	n:90000
Cons ci ratio: 2.278556e-01	ci left: 2.904406e-03	ci right 3.661502e-03	k: 294	n:90000
KS ci ratio: 3.232272e-02	ci left: 1.381916e-01	ci right 1.427427e-01	k: 12641	n:90000
C19orf18   90000 perm   17 sec   (5249 perm/sec)   p_kst 1.404556e-01   p_cons 3.266667e-03   p_joint 3.685556e-02

Joint ci ratio: 6.194815e-02	ci left: 3.730606e-02	ci right 3.970080e-02	k: 3849	n:100000
Cons ci ratio: 2.198188e-01	ci left: 2.821620e-03	ci right 3.527684e-03	k: 316	n:100000
KS ci ratio: 3.076689e-02	ci left: 1.375071e-01	ci right 1.418138e-01	k: 13965	n:100000
C19orf18   100000 perm   19 sec   (5151 perm/sec)   p_kst 1.396500e-01   p_cons 3.160000e-03   p_joint 3.849000e-02

Joint ci ratio: 6.024385e-02	ci left: 3.594594e-02	ci right 3.818765e-02	k: 4076	n:110000
Cons ci ratio: 2.080092e-01	ci left: 2.883473e-03	ci right 3.561320e-03	k: 353	n:110000
KS ci ratio: 2.933687e-02	ci left: 1.375930e-01	ci right 1.416987e-01	k: 15360	n:110000
C19orf18   110000 perm   22 sec   (5056 perm/sec)   p_kst 1.396364e-01   p_cons 3.209091e-03   p_joint 3.705455e-02

Joint ci ratio: 6.548904e-02	ci left: 2.804139e-02	ci right 2.994813e-02	k: 3478	n:120000
Cons ci ratio: 1.994601e-01	ci left: 2.888343e-03	ci right 3.536033e-03	k: 384	n:120000
KS ci ratio: 2.804946e-02	ci left: 1.380082e-01	ci right 1.419426e-01	k: 16796	n:120000
C19orf18   120000 perm   24 sec   (4964 perm/sec)   p_kst 1.399667e-01   p_cons 3.200000e-03   p_joint 2.898333e-02

Joint ci ratio: 6.393068e-02	ci left: 2.720835e-02	ci right 2.901278e-02	k: 3653	n:130000
Cons ci ratio: 1.909664e-01	ci left: 2.922244e-03	ci right 3.546394e-03	k: 419	n:130000
KS ci ratio: 2.695745e-02	ci left: 1.380109e-01	ci right 1.417898e-01	k: 18186	n:130000
C19orf18   130000 perm   27 sec   (4879 perm/sec)   p_kst 1.398923e-01   p_cons 3.223077e-03   p_joint 2.810000e-02

Joint ci ratio: 6.012823e-02	ci left: 2.857763e-02	ci right 3.035622e-02	k: 4124	n:140000
Cons ci ratio: 1.838788e-01	ci left: 2.938172e-03	ci right 3.539836e-03	k: 452	n:140000
KS ci ratio: 2.599306e-02	ci left: 1.379306e-01	ci right 1.415701e-01	k: 19564	n:140000
C19orf18   140000 perm   29 sec   (4799 perm/sec)   p_kst 1.397429e-01   p_cons 3.228571e-03   p_joint 2.945714e-02

Joint ci ratio: 6.111707e-02	ci left: 2.587689e-02	ci right 2.751480e-02	k: 4003	n:150000
Cons ci ratio: 1.775259e-01	ci left: 2.952346e-03	ci right 3.533784e-03	k: 485	n:150000
KS ci ratio: 2.508839e-02	ci left: 1.382145e-01	ci right 1.417327e-01	k: 20995	n:150000
C19orf18   150000 perm   32 sec   (4721 perm/sec)   p_kst 1.399667e-01   p_cons 3.233333e-03   p_joint 2.668667e-02

Joint ci ratio: 5.637610e-02	ci left: 2.850372e-02	ci right 3.016339e-02	k: 4692	n:160000
Cons ci ratio: 1.712931e-01	ci left: 2.983009e-03	ci right 3.547728e-03	k: 521	n:160000
KS ci ratio: 2.428337e-02	ci left: 1.383529e-01	ci right 1.417601e-01	k: 22408	n:160000
C19orf18   160000 perm   34 sec   (4648 perm/sec)   p_kst 1.400500e-01   p_cons 3.256250e-03   p_joint 2.932500e-02

Joint ci ratio: 5.292195e-02	ci left: 3.043668e-02	ci right 3.209701e-02	k: 5314	n:170000
Cons ci ratio: 1.656738e-01	ci left: 3.010378e-03	ci right 3.559718e-03	k: 557	n:170000
KS ci ratio: 2.356383e-02	ci left: 1.383479e-01	ci right 1.416526e-01	k: 23799	n:170000
C19orf18   170000 perm   37 sec   (4576 perm/sec)   p_kst 1.399941e-01   p_cons 3.276471e-03   p_joint 3.125882e-02

Joint ci ratio: 5.103738e-02	ci left: 3.092284e-02	ci right 3.254785e-02	k: 5711	n:180000
Cons ci ratio: 1.604381e-01	ci left: 3.040307e-03	ci right 3.575887e-03	k: 594	n:180000
KS ci ratio: 2.290205e-02	ci left: 1.383724e-01	ci right 1.415836e-01	k: 25195	n:180000
C19orf18   180000 perm   40 sec   (4505 perm/sec)   p_kst 1.399722e-01   p_cons 3.300000e-03   p_joint 3.172778e-02

Joint ci ratio: 4.915787e-02	ci left: 3.158756e-02	ci right 3.318464e-02	k: 6152	n:190000
Cons ci ratio: 1.550551e-01	ci left: 3.092626e-03	ci right 3.617444e-03	k: 636	n:190000
KS ci ratio: 2.228332e-02	ci left: 1.385003e-01	ci right 1.416265e-01	k: 26611	n:190000
C19orf18   190000 perm   43 sec   (4433 perm/sec)   p_kst 1.400579e-01   p_cons 3.347368e-03   p_joint 3.237895e-02

Joint ci ratio: 4.696540e-02	ci left: 3.286891e-02	ci right 3.445465e-02	k: 6731	n:200000
Cons ci ratio: 1.508501e-01	ci left: 3.111108e-03	ci right 3.623453e-03	k: 672	n:200000
KS ci ratio: 2.173291e-02	ci left: 1.383874e-01	ci right 1.414330e-01	k: 27981	n:200000
C19orf18   200000 perm   46 sec   (4367 perm/sec)   p_kst 1.399050e-01   p_cons 3.360000e-03   p_joint 3.365500e-02

Joint ci ratio: 4.586578e-02	ci left: 3.284278e-02	ci right 3.438918e-02	k: 7058	n:210000
Cons ci ratio: 1.486622e-01	ci left: 3.054623e-03	ci right 3.549720e-03	k: 692	n:210000
KS ci ratio: 2.122894e-02	ci left: 1.382009e-01	ci right 1.411710e-01	k: 29333	n:210000
C19orf18   210000 perm   49 sec   (4302 perm/sec)   p_kst 1.396810e-01   p_cons 3.295238e-03   p_joint 3.360952e-02

Joint ci ratio: 4.498827e-02	ci left: 3.260810e-02	ci right 3.411332e-02	k: 7338	n:220000
Cons ci ratio: 1.448445e-01	ci left: 3.077786e-03	ci right 3.562719e-03	k: 729	n:220000
KS ci ratio: 2.073335e-02	ci left: 1.383217e-01	ci right 1.412241e-01	k: 30749	n:220000
C19orf18   220000 perm   52 sec   (4241 perm/sec)   p_kst 1.397682e-01   p_cons 3.313636e-03   p_joint 3.335455e-02

Joint ci ratio: 4.388295e-02	ci left: 3.279415e-02	ci right 3.426981e-02	k: 7711	n:230000
Cons ci ratio: 1.409382e-01	ci left: 3.115862e-03	ci right 3.592442e-03	k: 770	n:230000
KS ci ratio: 2.029109e-02	ci left: 1.381947e-01	ci right 1.410318e-01	k: 32110	n:230000
C19orf18   230000 perm   55 sec   (4181 perm/sec)   p_kst 1.396087e-01   p_cons 3.347826e-03   p_joint 3.352609e-02

Joint ci ratio: 4.293776e-02	ci left: 3.284139e-02	ci right 3.428657e-02	k: 8054	n:240000
Cons ci ratio: 1.376725e-01	ci left: 3.134830e-03	ci right 3.602291e-03	k: 807	n:240000
KS ci ratio: 1.985909e-02	ci left: 1.382821e-01	ci right 1.410599e-01	k: 33520	n:240000
C19orf18   240000 perm   58 sec   (4124 perm/sec)   p_kst 1.396667e-01   p_cons 3.362500e-03   p_joint 3.355833e-02

Joint ci ratio: 4.202782e-02	ci left: 3.292081e-02	ci right 3.433803e-02	k: 8406	n:250000
Cons ci ratio: 1.349446e-01	ci left: 3.136936e-03	ci right 3.594697e-03	k: 840	n:250000
KS ci ratio: 1.946165e-02	ci left: 1.382636e-01	ci right 1.409848e-01	k: 34905	n:250000
C19orf18   250000 perm   61 sec   (4070 perm/sec)   p_kst 1.396200e-01   p_cons 3.360000e-03   p_joint 3.362400e-02

Joint ci ratio: 4.098972e-02	ci left: 3.328382e-02	ci right 3.468044e-02	k: 8834	n:260000
Cons ci ratio: 1.316193e-01	ci left: 3.176159e-03	ci right 3.627330e-03	k: 883	n:260000
KS ci ratio: 1.908868e-02	ci left: 1.382278e-01	ci right 1.408956e-01	k: 36285	n:260000
C19orf18   260000 perm   65 sec   (4014 perm/sec)   p_kst 1.395577e-01   p_cons 3.396154e-03   p_joint 3.397692e-02

Joint ci ratio: 3.432529e-02	ci left: 4.528632e-02	ci right 4.687159e-02	k: 12440	n:270000
Cons ci ratio: 1.285282e-01	ci left: 3.212605e-03	ci right 3.657419e-03	k: 926	n:270000
KS ci ratio: 1.874301e-02	ci left: 1.381103e-01	ci right 1.407271e-01	k: 37642	n:270000
C19orf18   270000 perm   68 sec   (3961 perm/sec)   p_kst 1.394148e-01   p_cons 3.429630e-03   p_joint 4.607407e-02

Joint ci ratio: 3.368867e-02	ci left: 4.534744e-02	ci right 4.690483e-02	k: 12914	n:280000
Cons ci ratio: 1.270997e-01	ci left: 3.170466e-03	ci right 3.604199e-03	k: 947	n:280000
KS ci ratio: 1.840286e-02	ci left: 1.381653e-01	ci right 1.407350e-01	k: 39045	n:280000
C19orf18   280000 perm   72 sec   (3909 perm/sec)   p_kst 1.394464e-01   p_cons 3.382143e-03   p_joint 4.612143e-02

Joint ci ratio: 3.309010e-02	ci left: 4.539433e-02	ci right 4.692510e-02	k: 13385	n:290000
Cons ci ratio: 1.251360e-01	ci left: 3.161324e-03	ci right 3.586628e-03	k: 977	n:290000
KS ci ratio: 1.806942e-02	ci left: 1.383646e-01	ci right 1.408909e-01	k: 40491	n:290000
C19orf18   290000 perm   75 sec   (3858 perm/sec)   p_kst 1.396241e-01   p_cons 3.368966e-03   p_joint 4.615517e-02

Joint ci ratio: 3.330603e-02	ci left: 4.340110e-02	ci right 4.487439e-02	k: 13240	n:300000
Cons ci ratio: 1.233220e-01	ci left: 3.149607e-03	ci right 3.566744e-03	k: 1006	n:300000
KS ci ratio: 1.777170e-02	ci left: 1.383052e-01	ci right 1.407884e-01	k: 41863	n:300000
C19orf18   300000 perm   79 sec   (3808 perm/sec)   p_kst 1.395433e-01   p_cons 3.353333e-03   p_joint 4.413333e-02

Joint ci ratio: 3.218471e-02	ci left: 4.493229e-02	ci right 4.640525e-02	k: 14156	n:310000
Cons ci ratio: 1.214084e-01	ci left: 3.148073e-03	ci right 3.558072e-03	k: 1038	n:310000
KS ci ratio: 1.748329e-02	ci left: 1.383175e-01	ci right 1.407602e-01	k: 43256	n:310000
C19orf18   310000 perm   82 sec   (3760 perm/sec)   p_kst 1.395355e-01   p_cons 3.348387e-03   p_joint 4.566452e-02

Joint ci ratio: 3.172983e-02	ci left: 4.480222e-02	ci right 4.624978e-02	k: 14567	n:320000
Cons ci ratio: 1.194134e-01	ci left: 3.155777e-03	ci right 3.559549e-03	k: 1073	n:320000
KS ci ratio: 1.720400e-02	ci left: 1.383916e-01	ci right 1.407962e-01	k: 44669	n:320000
C19orf18   320000 perm   86 sec   (3712 perm/sec)   p_kst 1.395906e-01   p_cons 3.353125e-03   p_joint 4.552188e-02

Joint ci ratio: 3.124456e-02	ci left: 4.481552e-02	ci right 4.624096e-02	k: 15023	n:330000
Cons ci ratio: 1.177804e-01	ci left: 3.148359e-03	ci right 3.545290e-03	k: 1103	n:330000
KS ci ratio: 1.693533e-02	ci left: 1.384947e-01	ci right 1.408632e-01	k: 46093	n:330000
C19orf18   330000 perm   90 sec   (3667 perm/sec)   p_kst 1.396758e-01   p_cons 3.342424e-03   p_joint 4.552424e-02

Joint ci ratio: 3.111618e-02	ci left: 4.390272e-02	ci right 4.529329e-02	k: 15162	n:340000
Cons ci ratio: 1.160076e-01	ci left: 3.152837e-03	ci right 3.543939e-03	k: 1137	n:340000
KS ci ratio: 1.667561e-02	ci left: 1.386389e-01	ci right 1.409731e-01	k: 47533	n:340000
C19orf18   340000 perm   94 sec   (3623 perm/sec)   p_kst 1.398029e-01   p_cons 3.344118e-03   p_joint 4.459412e-02

Joint ci ratio: 3.258204e-02	ci left: 3.906686e-02	ci right 4.036363e-02	k: 13899	n:350000
Cons ci ratio: 1.142635e-01	ci left: 3.159876e-03	ci right 3.545561e-03	k: 1172	n:350000
KS ci ratio: 1.644036e-02	ci left: 1.385872e-01	ci right 1.408873e-01	k: 48907	n:350000
C19orf18   350000 perm   98 sec   (3579 perm/sec)   p_kst 1.397343e-01   p_cons 3.348571e-03   p_joint 3.971143e-02

Joint ci ratio: 3.187313e-02	ci left: 3.967919e-02	ci right 4.096711e-02	k: 14515	n:360000
Cons ci ratio: 1.125958e-01	ci left: 3.166567e-03	ci right 3.547052e-03	k: 1207	n:360000
KS ci ratio: 1.621292e-02	ci left: 1.385663e-01	ci right 1.408340e-01	k: 50291	n:360000
C19orf18   360000 perm   102 sec   (3532 perm/sec)   p_kst 1.396972e-01   p_cons 3.352778e-03   p_joint 4.031944e-02

Joint ci ratio: 3.323445e-02	ci left: 3.563528e-02	ci right 3.684227e-02	k: 13407	n:370000
Cons ci ratio: 1.113140e-01	ci left: 3.154539e-03	ci right 3.528981e-03	k: 1235	n:370000
KS ci ratio: 1.598981e-02	ci left: 1.386194e-01	ci right 1.408565e-01	k: 51702	n:370000
C19orf18   370000 perm   106 sec   (3490 perm/sec)   p_kst 1.397351e-01   p_cons 3.337838e-03   p_joint 3.623514e-02

Joint ci ratio: 3.324703e-02	ci left: 3.470506e-02	ci right 3.588099e-02	k: 13410	n:380000
Cons ci ratio: 1.099877e-01	ci left: 3.148287e-03	ci right 3.517246e-03	k: 1265	n:380000
KS ci ratio: 1.578464e-02	ci left: 1.385336e-01	ci right 1.407403e-01	k: 53061	n:380000
C19orf18   380000 perm   110 sec   (3446 perm/sec)   p_kst 1.396342e-01   p_cons 3.328947e-03   p_joint 3.528947e-02

Joint ci ratio: 3.282163e-02	ci left: 3.470520e-02	ci right 3.586582e-02	k: 13760	n:390000
Cons ci ratio: 1.087498e-01	ci left: 3.139886e-03	ci right 3.503453e-03	k: 1294	n:390000
KS ci ratio: 1.558285e-02	ci left: 1.385188e-01	ci right 1.406968e-01	k: 54446	n:390000
C19orf18   390000 perm   115 sec   (3405 perm/sec)   p_kst 1.396051e-01   p_cons 3.317949e-03   p_joint 3.528205e-02

Joint ci ratio: 3.124957e-02	ci left: 3.725823e-02	ci right 3.844348e-02	k: 15139	n:400000
Cons ci ratio: 1.071475e-01	ci left: 3.156257e-03	ci right 3.515997e-03	k: 1333	n:400000
KS ci ratio: 1.538253e-02	ci left: 1.385996e-01	ci right 1.407506e-01	k: 55869	n:400000
C19orf18   400000 perm   119 sec   (3363 perm/sec)   p_kst 1.396725e-01   p_cons 3.332500e-03   p_joint 3.784750e-02

Joint ci ratio: 3.086354e-02	ci left: 3.727155e-02	ci right 3.844231e-02	k: 15520	n:410000
Cons ci ratio: 1.058464e-01	ci left: 3.157619e-03	ci right 3.512872e-03	k: 1366	n:410000
KS ci ratio: 1.518850e-02	ci left: 1.386961e-01	ci right 1.408212e-01	k: 57300	n:410000
C19orf18   410000 perm   123 sec   (3325 perm/sec)   p_kst 1.397561e-01   p_cons 3.331707e-03   p_joint 3.785366e-02

Joint ci ratio: 2.977669e-02	ci left: 3.903820e-02	ci right 4.022054e-02	k: 16643	n:420000
Cons ci ratio: 1.041446e-01	ci left: 3.186770e-03	ci right 3.539184e-03	k: 1411	n:420000
KS ci ratio: 1.500876e-02	ci left: 1.386742e-01	ci right 1.407736e-01	k: 58683	n:420000
C19orf18   420000 perm   128 sec   (3287 perm/sec)   p_kst 1.397214e-01   p_cons 3.359524e-03   p_joint 3.962619e-02

Joint ci ratio: 3.012197e-02	ci left: 3.732197e-02	ci right 3.846566e-02	k: 16293	n:430000
Cons ci ratio: 1.029844e-01	ci left: 3.185150e-03	ci right 3.533223e-03	k: 1443	n:430000
KS ci ratio: 1.482593e-02	ci left: 1.388042e-01	ci right 1.408797e-01	k: 60131	n:430000
C19orf18   430000 perm   132 sec   (3250 perm/sec)   p_kst 1.398395e-01   p_cons 3.355814e-03   p_joint 3.789070e-02

Joint ci ratio: 2.715102e-02	ci left: 4.461739e-02	ci right 4.584770e-02	k: 19901	n:440000
Cons ci ratio: 1.021752e-01	ci left: 3.163690e-03	ci right 3.506538e-03	k: 1466	n:440000
KS ci ratio: 1.465849e-02	ci left: 1.387834e-01	ci right 1.408350e-01	k: 61515	n:440000
C19orf18   440000 perm   137 sec   (3215 perm/sec)   p_kst 1.398068e-01   p_cons 3.331818e-03   p_joint 4.522955e-02

Joint ci ratio: 2.630296e-02	ci left: 4.641658e-02	ci right 4.765593e-02	k: 21165	n:450000
Cons ci ratio: 1.010450e-01	ci left: 3.164855e-03	ci right 3.503812e-03	k: 1499	n:450000
KS ci ratio: 1.449712e-02	ci left: 1.387548e-01	ci right 1.407832e-01	k: 62895	n:450000
C19orf18   450000 perm   142 sec   (3179 perm/sec)   p_kst 1.397667e-01   p_cons 3.331111e-03   p_joint 4.703333e-02

Joint ci ratio: 2.843405e-02	ci left: 3.911382e-02	ci right 4.024416e-02	k: 18251	n:460000
Cons ci ratio: 1.000498e-01	ci left: 3.159631e-03	ci right 3.494499e-03	k: 1529	n:460000
KS ci ratio: 1.433786e-02	ci left: 1.387796e-01	ci right 1.407859e-01	k: 64299	n:460000
C19orf18   460000 perm   146 sec   (3145 perm/sec)   p_kst 1.397804e-01   p_cons 3.323913e-03   p_joint 3.967609e-02

Joint ci ratio: 2.624047e-02	ci left: 4.473469e-02	ci right 4.592625e-02	k: 21304	n:470000
Cons ci ratio: 9.892457e-02	ci left: 3.165020e-03	ci right 3.496468e-03	k: 1564	n:470000
KS ci ratio: 1.417859e-02	ci left: 1.388904e-01	ci right 1.408758e-01	k: 65744	n:470000
C19orf18   470000 perm   151 sec   (3111 perm/sec)   p_kst 1.398809e-01   p_cons 3.327660e-03   p_joint 4.532766e-02

Outputting figure to mutsig2_images.part000000000021/C19orf18.3_672_470000_0.13988_0.0033277_0.045328.png
                gene_name: C19orf18
               theta_stop: 0.099 
                    nperm: 470000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0033 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0035 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.046 

Current progress: 58 percent done.
C19orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
KS ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
C19orf29   10000 perm   2 sec   (6538 perm/sec)   p_kst 7.745000e-01   p_cons 7.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C19orf29.3_2317_10000_0.7745_0.7883_1.png
                gene_name: C19orf29
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
C16orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
Cons ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
KS ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
C16orf78   10000 perm   1 sec   (7384 perm/sec)   p_kst 8.123000e-01   p_cons 1.349000e-01   p_joint 3.189000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf78.2_818_10000_0.8123_0.1349_0.3189.png
                gene_name: C16orf78
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 64 percent done.
C16orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
KS ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
C16orf82   10000 perm   1 sec   (8105 perm/sec)   p_kst 9.102000e-01   p_cons 9.100000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C16orf82.2_469_10000_0.9102_0.91_1.png
                gene_name: C16orf82
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
C16orf91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KS ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
C16orf91   10000 perm   1 sec   (7261 perm/sec)   p_kst 5.678000e-01   p_cons 2.568000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf91.2_1089_10000_0.5678_0.2568_0.3624.png
                gene_name: C16orf91
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 70 percent done.
C16orf92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
Cons ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
C16orf92   10000 perm   1 sec   (8067 perm/sec)   p_kst 7.101000e-01   p_cons 4.231000e-01   p_joint 4.821000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf92.2_429_10000_0.7101_0.4231_0.4821.png
                gene_name: C16orf92
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 73 percent done.
C16orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
Cons ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
C16orf93   10000 perm   1 sec   (7404 perm/sec)   p_kst 4.318000e-01   p_cons 8.702000e-01   p_joint 8.942000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf93.2_917_10000_0.4318_0.8702_0.8942.png
                gene_name: C16orf93
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 76 percent done.
C17orf102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.573360e-03	ci left: 9.602659e-01	ci right 9.676606e-01	k: 9641	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
C17orf102   10000 perm   1 sec   (7731 perm/sec)   p_kst 4.185000e-01   p_cons 9.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf102.2_512_10000_0.4185_0.9641_1.png
                gene_name: C17orf102
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
C17orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
C17orf48   10000 perm   1 sec   (7298 perm/sec)   p_kst 4.950000e-01   p_cons 6.918000e-01   p_joint 8.251000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf48.2_1041_10000_0.495_0.6918_0.8251.png
                gene_name: C17orf48
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 82 percent done.
C17orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
Cons ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
KS ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
C17orf56   10000 perm   1 sec   (6969 perm/sec)   p_kst 1.720000e-02   p_cons 5.266000e-01   p_joint 6.710000e-02

Joint ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
Cons ci ratio: 2.628989e-02	ci left: 5.194517e-01	ci right 5.333406e-01	k: 10528	n:20000
KS ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
C17orf56   20000 perm   3 sec   (6152 perm/sec)   p_kst 1.915000e-02   p_cons 5.264000e-01   p_joint 1.160000e-01

Joint ci ratio: 5.248895e-02	ci left: 1.526362e-01	ci right 1.608971e-01	k: 4702	n:30000
Cons ci ratio: 2.146036e-02	ci left: 5.208644e-01	ci right 5.321972e-01	k: 15796	n:30000
KS ci ratio: 1.630588e-01	ci left: 1.735716e-02	ci right 2.047033e-02	k: 566	n:30000
C17orf56   30000 perm   5 sec   (5877 perm/sec)   p_kst 1.886667e-02   p_cons 5.265333e-01   p_joint 1.567333e-01

Joint ci ratio: 4.938045e-02	ci left: 1.327290e-01	ci right 1.394740e-01	k: 5443	n:40000
Cons ci ratio: 1.856712e-02	ci left: 5.221179e-01	ci right 5.319281e-01	k: 21081	n:40000
KS ci ratio: 1.359039e-01	ci left: 1.898872e-02	ci right 2.178152e-02	k: 814	n:40000
C17orf56   40000 perm   7 sec   (5690 perm/sec)   p_kst 2.035000e-02   p_cons 5.270250e-01   p_joint 1.360750e-01

Joint ci ratio: 3.468886e-02	ci left: 1.998989e-01	ci right 2.069755e-01	k: 10171	n:50000
Cons ci ratio: 1.659523e-02	ci left: 5.229925e-01	ci right 5.317643e-01	k: 26369	n:50000
KS ci ratio: 1.216022e-01	ci left: 1.912060e-02	ci right 2.161552e-02	k: 1017	n:50000
C17orf56   50000 perm   9 sec   (5539 perm/sec)   p_kst 2.034000e-02   p_cons 5.273800e-01   p_joint 2.034200e-01

Joint ci ratio: 3.596795e-02	ci left: 1.622696e-01	ci right 1.682295e-01	k: 9914	n:60000
Cons ci ratio: 1.514269e-02	ci left: 5.235958e-01	ci right 5.316016e-01	k: 31656	n:60000
KS ci ratio: 1.100727e-01	ci left: 1.955944e-02	ci right 2.185392e-02	k: 1241	n:60000
C17orf56   60000 perm   11 sec   (5412 perm/sec)   p_kst 2.068333e-02   p_cons 5.276000e-01   p_joint 1.652333e-01

Joint ci ratio: 2.479956e-02	ci left: 2.597697e-01	ci right 2.663071e-01	k: 18412	n:70000
Cons ci ratio: 1.397532e-02	ci left: 5.254655e-01	ci right 5.328750e-01	k: 37042	n:70000
KS ci ratio: 1.017286e-01	ci left: 1.971374e-02	ci right 2.184053e-02	k: 1453	n:70000
C17orf56   70000 perm   13 sec   (5290 perm/sec)   p_kst 2.075714e-02   p_cons 5.291714e-01   p_joint 2.630286e-01

Joint ci ratio: 2.864019e-02	ci left: 1.870131e-01	ci right 1.924594e-01	k: 15178	n:80000
Cons ci ratio: 1.307134e-02	ci left: 5.257589e-01	ci right 5.326890e-01	k: 42338	n:80000
KS ci ratio: 9.503337e-02	ci left: 1.983442e-02	ci right 2.182554e-02	k: 1665	n:80000
C17orf56   80000 perm   15 sec   (5187 perm/sec)   p_kst 2.081250e-02   p_cons 5.292250e-01   p_joint 1.897250e-01

Outputting figure to mutsig2_images.part000000000021/C17orf56.2_1626_80000_0.020813_0.52922_0.18973.png
                gene_name: C17orf56
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 85 percent done.
C17orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
Cons ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
KS ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
C17orf64   10000 perm   1 sec   (7567 perm/sec)   p_kst 1.636000e-01   p_cons 6.294000e-01   p_joint 5.756000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf64.2_735_10000_0.1636_0.6294_0.5756.png
                gene_name: C17orf64
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
C17orf77
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 91 percent done.
C17orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
KS ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
C17orf78   10000 perm   1 sec   (7176 perm/sec)   p_kst 5.947000e-01   p_cons 4.683000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf78.2_856_10000_0.5947_0.4683_0.7394.png
                gene_name: C17orf78
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 94 percent done.
C17orf95
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
Cons ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
KS ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
C17orf95   10000 perm   1 sec   (7941 perm/sec)   p_kst 1.851000e-01   p_cons 7.566000e-01   p_joint 3.501000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf95.2_589_10000_0.1851_0.7566_0.3501.png
                gene_name: C17orf95
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 97 percent done.
C18orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
KS ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
C18orf10   10000 perm   1 sec   (7510 perm/sec)   p_kst 1.485000e-01   p_cons 6.180000e-02   p_joint 4.380000e-02

Joint ci ratio: 5.749260e-02	ci left: 1.831496e-01	ci right 1.940411e-01	k: 3771	n:20000
Cons ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
KS ci ratio: 6.692997e-02	ci left: 1.414781e-01	ci right 1.513250e-01	k: 2927	n:20000
C18orf10   20000 perm   3 sec   (6585 perm/sec)   p_kst 1.463500e-01   p_cons 5.370000e-02   p_joint 1.885500e-01

Joint ci ratio: 4.732971e-02	ci left: 1.816769e-01	ci right 1.905173e-01	k: 5582	n:30000
Cons ci ratio: 9.541246e-02	ci left: 5.071964e-02	ci right 5.583398e-02	k: 1597	n:30000
KS ci ratio: 5.434433e-02	ci left: 1.437686e-01	ci right 1.518331e-01	k: 4433	n:30000
C18orf10   30000 perm   5 sec   (6238 perm/sec)   p_kst 1.477667e-01   p_cons 5.323333e-02   p_joint 1.860667e-01

Outputting figure to mutsig2_images.part000000000021/C18orf10.2_931_30000_0.14777_0.053233_0.18607.png
                gene_name: C18orf10
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000021
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 21 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1546>
Subject: Job 4421766: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1546>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000022> was used as the working directory.
Started at Wed Oct 24 17:33:02 2012
Results reported at Wed Oct 24 17:54:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000022.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000022.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 22  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000022.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1542.26 sec.
    Max Memory :      5281 MB
    Max Swap   :      7629 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
22
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 22
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 22: processing genes 1901 - 1990
Calculating significance of each gene.
Using projection method.
1901	C19orf36	6.755979e-01
1902	C19orf39	1
1903	C19orf40	6.242947e-01
1904	C19orf41	6.661426e-01
1905	C19orf42	1.935494e-01
1906	C19orf43	1
1907	C19orf44	9.336785e-01
1908	C19orf45	6.048272e-01
1909	C19orf46	7.470690e-01
1910	C19orf47	1
1911	C19orf48	1
1912	C19orf50	7.716684e-01
1913	C19orf51	8.468661e-02
1914	C19orf52	5.727020e-01
1915	C19orf53	1
1916	C19orf54	1
1917	C19orf55	7.375796e-01
1918	C19orf56	1
1919	C19orf57	7.860074e-01
1920	C19orf59	1
1921	C19orf6	1
1922	C19orf60	1
1923	C19orf61	5.227491e-01
1924	C19orf62	1
1925	C19orf63	1
1926	C19orf66	1
1927	C19orf70	1
1928	C19orf73	1
1929	C19orf75	1.137427e-01
1930	C1D	1
1931	C1GALT1	5.025751e-01
1932	C1GALT1C1	4.107382e-01
1933	C1QA	5.752298e-01
1934	C1QB	1
1935	C1QBP	1
1936	C1QC	1.428472e-01
1937	C1QL1	1
1938	C1QL2	1
1939	C1QL3	7.438134e-01
1940	C1QL4	5.173559e-01
1941	C1QTNF1	5.052711e-01
1942	C1QTNF2	7.871166e-01
1943	C1QTNF3	5.096484e-01
1944	C1QTNF4	5.109728e-01
1945	C1QTNF5	1
1946	C1QTNF6	1
1947	C1QTNF7	5.334864e-01
1948	C1QTNF8	7.552990e-01
1949	C1QTNF9	7.290795e-01
1950	C1QTNF9B	1
1951	C1R	1
1952	C1RL	1
1953	C1S	1
1954	C1orf100	5.182287e-01
1955	C1orf101	5.358599e-01
1956	C1orf103	5.643054e-01
1957	C1orf104	5.642381e-01
1958	C1orf105	1.880898e-02
1959	C1orf106	3.879058e-01
1960	C1orf107	7.971000e-01
1961	C1orf109	1
1962	C1orf110	8.403187e-02
1963	C1orf111	8.525195e-01
1964	C1orf112	2.446253e-01
1965	C1orf113	8.425846e-01
1966	C1orf114	3.275591e-01
1967	C1orf115	1
1968	C1orf116	7.782593e-01
1969	C1orf122	1
1970	C1orf123	1
1971	C1orf124	8.628052e-01
1972	C1orf125	3.149007e-01
1973	C1orf127	5.816251e-01
1974	C1orf128	3.653560e-01
1975	C1orf129	1.361860e-02
1976	C1orf130	1
1977	C1orf131	1
1978	C1orf135	8.579289e-01
1979	C1orf14	8.742435e-01
1980	C1orf141	7.173760e-01
1981	C1orf144	1
1982	C1orf146	1
1983	C1orf150	1
1984	C1orf151	1
1985	C1orf156	5.178483e-01
1986	C1orf158	7.126635e-01
1987	C1orf159	1
1988	C1orf161	9.046523e-01
1989	C1orf162	3.502937e-01
1990	C1orf163	2.551895e-01
Done

Running MutSig 2:
Scatter job 22: processing genes 1901 - 1990
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
C1orf129   10000 perm   2 sec   (4295 perm/sec)   p_kst 1.200000e-03   p_cons 7.723000e-01   p_joint 1.070000e-02

Joint ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
Cons ci ratio: 1.490101e-02	ci left: 7.699552e-01	ci right 7.815646e-01	k: 15516	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
C1orf129   20000 perm   8 sec   (2513 perm/sec)   p_kst 1.200000e-03   p_cons 7.758000e-01   p_joint 1.765000e-02

Joint ci ratio: 2.152558e-01	ci left: 9.755930e-03	ci right 1.214020e-02	k: 327	n:30000
Cons ci ratio: 1.232039e-02	ci left: 7.666053e-01	ci right 7.761421e-01	k: 23142	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
C1orf129   30000 perm   11 sec   (2795 perm/sec)   p_kst 1.200000e-03   p_cons 7.714000e-01   p_joint 1.090000e-02

Joint ci ratio: 2.165547e-01	ci left: 7.244952e-03	ci right 9.027564e-03	k: 324	n:40000
Cons ci ratio: 1.022257e-02	ci left: 7.820987e-01	ci right 7.901598e-01	k: 31446	n:40000
KS ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
C1orf129   40000 perm   14 sec   (2939 perm/sec)   p_kst 1.250000e-03   p_cons 7.861500e-01   p_joint 8.100000e-03

Joint ci ratio: 1.723502e-01	ci left: 9.356953e-03	ci right 1.114060e-02	k: 511	n:50000
Cons ci ratio: 9.132732e-03	ci left: 7.829219e-01	ci right 7.901248e-01	k: 39327	n:50000
KS ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
C1orf129   50000 perm   17 sec   (3024 perm/sec)   p_kst 1.300000e-03   p_cons 7.865400e-01   p_joint 1.022000e-02

Joint ci ratio: 1.769083e-01	ci left: 7.398325e-03	ci right 8.849858e-03	k: 486	n:60000
Cons ci ratio: 8.325992e-03	ci left: 7.836850e-01	ci right 7.902539e-01	k: 47219	n:60000
KS ci ratio: 4.248789e-01	ci left: 1.116844e-03	ci right 1.733006e-03	k: 84	n:60000
C1orf129   60000 perm   20 sec   (3076 perm/sec)   p_kst 1.400000e-03   p_cons 7.869833e-01   p_joint 8.100000e-03

Joint ci ratio: 1.689855e-01	ci left: 6.983666e-03	ci right 8.286217e-03	k: 533	n:70000
Cons ci ratio: 7.722761e-03	ci left: 7.833018e-01	ci right 7.893887e-01	k: 55045	n:70000
KS ci ratio: 4.019076e-01	ci left: 1.085297e-03	ci right 1.643070e-03	k: 94	n:70000
C1orf129   70000 perm   23 sec   (3089 perm/sec)   p_kst 1.342857e-03   p_cons 7.863571e-01   p_joint 7.614286e-03

Joint ci ratio: 1.630286e-01	ci left: 6.589827e-03	ci right 7.771336e-03	k: 573	n:80000
Cons ci ratio: 7.251267e-03	ci left: 7.822246e-01	ci right 7.879298e-01	k: 62807	n:80000
KS ci ratio: 3.652768e-01	ci left: 1.175589e-03	ci right 1.711615e-03	k: 114	n:80000
C1orf129   80000 perm   26 sec   (3095 perm/sec)   p_kst 1.425000e-03   p_cons 7.850875e-01   p_joint 7.162500e-03

Joint ci ratio: 1.454017e-01	ci left: 7.428339e-03	ci right 8.603703e-03	k: 720	n:90000
Cons ci ratio: 6.850709e-03	ci left: 7.816874e-01	ci right 7.870720e-01	k: 70595	n:90000
KS ci ratio: 3.422407e-01	ci left: 1.206966e-03	ci right 1.714928e-03	k: 130	n:90000
C1orf129   90000 perm   29 sec   (3091 perm/sec)   p_kst 1.444444e-03   p_cons 7.843889e-01   p_joint 8.000000e-03

Joint ci ratio: 1.119608e-01	ci left: 1.143154e-02	ci right 1.279698e-02	k: 1210	n:100000
Cons ci ratio: 6.484718e-03	ci left: 7.825811e-01	ci right 7.876824e-01	k: 78514	n:100000
KS ci ratio: 3.219819e-01	ci left: 1.242111e-03	ci right 1.727543e-03	k: 147	n:100000
C1orf129   100000 perm   32 sec   (3081 perm/sec)   p_kst 1.470000e-03   p_cons 7.851400e-01   p_joint 1.210000e-02

Joint ci ratio: 1.170099e-01	ci left: 9.508679e-03	ci right 1.069918e-02	k: 1110	n:110000
Cons ci ratio: 6.184002e-03	ci left: 7.826423e-01	ci right 7.875062e-01	k: 86359	n:110000
KS ci ratio: 3.068091e-01	ci left: 1.254803e-03	ci right 1.717575e-03	k: 162	n:110000
C1orf129   110000 perm   36 sec   (3065 perm/sec)   p_kst 1.472727e-03   p_cons 7.850818e-01   p_joint 1.009091e-02

Joint ci ratio: 1.139925e-01	ci left: 9.201760e-03	ci right 1.032212e-02	k: 1170	n:120000
Cons ci ratio: 5.916171e-03	ci left: 7.830076e-01	ci right 7.876620e-01	k: 94241	n:120000
KS ci ratio: 2.969577e-01	ci left: 1.234960e-03	ci right 1.673035e-03	k: 173	n:120000
C1orf129   120000 perm   39 sec   (3043 perm/sec)   p_kst 1.441667e-03   p_cons 7.853417e-01   p_joint 9.750000e-03

Joint ci ratio: 8.431838e-02	ci left: 1.566382e-02	ci right 1.705019e-02	k: 2125	n:130000
Cons ci ratio: 5.695147e-03	ci left: 7.824400e-01	ci right 7.869165e-01	k: 102009	n:130000
KS ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
C1orf129   130000 perm   43 sec   (3019 perm/sec)   p_kst 1.530769e-03   p_cons 7.846846e-01   p_joint 1.634615e-02

Joint ci ratio: 8.264837e-02	ci left: 1.516026e-02	ci right 1.647419e-02	k: 2213	n:140000
Cons ci ratio: 5.483323e-03	ci left: 7.828099e-01	ci right 7.871212e-01	k: 109896	n:140000
KS ci ratio: 2.652882e-01	ci left: 1.350747e-03	ci right 1.770331e-03	k: 217	n:140000
C1orf129   140000 perm   47 sec   (2993 perm/sec)   p_kst 1.550000e-03   p_cons 7.849714e-01   p_joint 1.580714e-02

Joint ci ratio: 7.780700e-02	ci left: 1.599214e-02	ci right 1.729331e-02	k: 2495	n:150000
Cons ci ratio: 5.293596e-03	ci left: 7.831262e-01	ci right 7.872894e-01	k: 117782	n:150000
KS ci ratio: 2.594101e-01	ci left: 1.322978e-03	ci right 1.723354e-03	k: 227	n:150000
C1orf129   150000 perm   51 sec   (2967 perm/sec)   p_kst 1.513333e-03   p_cons 7.852133e-01   p_joint 1.663333e-02

Joint ci ratio: 7.761158e-02	ci left: 1.508428e-02	ci right 1.630836e-02	k: 2510	n:160000
Cons ci ratio: 5.125990e-03	ci left: 7.831606e-01	ci right 7.871916e-01	k: 125629	n:160000
KS ci ratio: 2.533735e-01	ci left: 1.304623e-03	ci right 1.688805e-03	k: 238	n:160000
C1orf129   160000 perm   54 sec   (2939 perm/sec)   p_kst 1.487500e-03   p_cons 7.851813e-01   p_joint 1.568750e-02

Joint ci ratio: 7.376341e-02	ci left: 1.573804e-02	ci right 1.694913e-02	k: 2777	n:170000
Cons ci ratio: 4.970582e-03	ci left: 7.833816e-01	ci right 7.872910e-01	k: 133508	n:170000
KS ci ratio: 2.467530e-01	ci left: 1.299559e-03	ci right 1.670717e-03	k: 251	n:170000
C1orf129   170000 perm   58 sec   (2911 perm/sec)   p_kst 1.476471e-03   p_cons 7.853412e-01   p_joint 1.633529e-02

Joint ci ratio: 7.558599e-02	ci left: 1.416543e-02	ci right 1.528361e-02	k: 2649	n:180000
Cons ci ratio: 4.836858e-03	ci left: 7.829945e-01	ci right 7.867964e-01	k: 141282	n:180000
KS ci ratio: 2.353480e-01	ci left: 1.357870e-03	ci right 1.725150e-03	k: 276	n:180000
C1orf129   180000 perm   62 sec   (2882 perm/sec)   p_kst 1.533333e-03   p_cons 7.849000e-01   p_joint 1.471667e-02

Joint ci ratio: 9.475999e-02	ci left: 8.503128e-03	ci right 9.354062e-03	k: 1695	n:190000
Cons ci ratio: 4.710493e-03	ci left: 7.828554e-01	ci right 7.865570e-01	k: 149095	n:190000
KS ci ratio: 2.280534e-01	ci left: 1.375644e-03	ci right 1.734576e-03	k: 294	n:190000
C1orf129   190000 perm   67 sec   (2855 perm/sec)   p_kst 1.547368e-03   p_cons 7.847105e-01   p_joint 8.921053e-03

Joint ci ratio: 9.717930e-02	ci left: 7.677651e-03	ci right 8.466707e-03	k: 1613	n:200000
Cons ci ratio: 4.494464e-03	ci left: 7.900339e-01	ci right 7.935976e-01	k: 158364	n:200000
KS ci ratio: 2.235539e-01	ci left: 1.363467e-03	ci right 1.711237e-03	k: 306	n:200000
C1orf129   200000 perm   71 sec   (2829 perm/sec)   p_kst 1.530000e-03   p_cons 7.918200e-01   p_joint 8.065000e-03

Joint ci ratio: 9.580229e-02	ci left: 7.530430e-03	ci right 8.292771e-03	k: 1660	n:210000
Cons ci ratio: 4.389201e-03	ci left: 7.898469e-01	ci right 7.933260e-01	k: 166234	n:210000
KS ci ratio: 2.193106e-01	ci left: 1.352513e-03	ci right 1.690058e-03	k: 318	n:210000
C1orf129   210000 perm   75 sec   (2803 perm/sec)   p_kst 1.514286e-03   p_cons 7.915905e-01   p_joint 7.904762e-03

Joint ci ratio: 9.398409e-02	ci left: 7.476570e-03	ci right 8.218303e-03	k: 1725	n:220000
Cons ci ratio: 4.288458e-03	ci left: 7.898739e-01	ci right 7.932730e-01	k: 174147	n:220000
KS ci ratio: 2.121148e-01	ci left: 1.385636e-03	ci right 1.718627e-03	k: 340	n:220000
C1orf129   220000 perm   79 sec   (2776 perm/sec)   p_kst 1.545455e-03   p_cons 7.915773e-01   p_joint 7.840909e-03

Joint ci ratio: 1.073391e-01	ci left: 5.455642e-03	ci right 6.078652e-03	k: 1325	n:230000
Cons ci ratio: 4.194071e-03	ci left: 7.899212e-01	ci right 7.932454e-01	k: 182065	n:230000
KS ci ratio: 1.988395e-01	ci left: 1.519246e-03	ci right 1.858728e-03	k: 387	n:230000
C1orf129   230000 perm   84 sec   (2747 perm/sec)   p_kst 1.682609e-03   p_cons 7.915870e-01   p_joint 5.760870e-03

Joint ci ratio: 1.063882e-01	ci left: 5.325631e-03	ci right 5.928069e-03	k: 1349	n:240000
Cons ci ratio: 4.106847e-03	ci left: 7.898691e-01	ci right 7.931238e-01	k: 189960	n:240000
KS ci ratio: 1.946215e-01	ci left: 1.523289e-03	ci right 1.855598e-03	k: 404	n:240000
C1orf129   240000 perm   88 sec   (2720 perm/sec)   p_kst 1.683333e-03   p_cons 7.915000e-01   p_joint 5.620833e-03

Joint ci ratio: 1.043227e-01	ci left: 5.322914e-03	ci right 5.912637e-03	k: 1403	n:250000
Cons ci ratio: 4.022945e-03	ci left: 7.899784e-01	ci right 7.931668e-01	k: 197894	n:250000
KS ci ratio: 1.899859e-01	ci left: 1.538507e-03	ci right 1.865219e-03	k: 424	n:250000
C1orf129   250000 perm   93 sec   (2693 perm/sec)   p_kst 1.696000e-03   p_cons 7.915760e-01   p_joint 5.612000e-03

Joint ci ratio: 1.059391e-01	ci left: 4.960846e-03	ci right 5.519501e-03	k: 1361	n:260000
Cons ci ratio: 3.944167e-03	ci left: 7.900645e-01	ci right 7.931906e-01	k: 205824	n:260000
KS ci ratio: 1.869330e-01	ci left: 1.530639e-03	ci right 1.849865e-03	k: 438	n:260000
C1orf129   260000 perm   97 sec   (2668 perm/sec)   p_kst 1.684615e-03   p_cons 7.916308e-01   p_joint 5.234615e-03

Joint ci ratio: 1.082917e-01	ci left: 4.568001e-03	ci right 5.094567e-03	k: 1303	n:270000
Cons ci ratio: 3.869147e-03	ci left: 7.902041e-01	ci right 7.932711e-01	k: 213770	n:270000
KS ci ratio: 1.834154e-01	ci left: 1.533993e-03	ci right 1.847229e-03	k: 455	n:270000
C1orf129   270000 perm   102 sec   (2642 perm/sec)   p_kst 1.685185e-03   p_cons 7.917407e-01   p_joint 4.825926e-03

Joint ci ratio: 1.084684e-01	ci left: 4.390938e-03	ci right 4.897971e-03	k: 1299	n:280000
Cons ci ratio: 3.798786e-03	ci left: 7.902877e-01	ci right 7.932991e-01	k: 221703	n:280000
KS ci ratio: 1.802802e-01	ci left: 1.533750e-03	ci right 1.840998e-03	k: 471	n:280000
C1orf129   280000 perm   107 sec   (2616 perm/sec)   p_kst 1.682143e-03   p_cons 7.917964e-01   p_joint 4.639286e-03

Joint ci ratio: 1.043260e-01	ci left: 4.591987e-03	ci right 5.100745e-03	k: 1404	n:290000
Cons ci ratio: 3.732557e-03	ci left: 7.903280e-01	ci right 7.932869e-01	k: 229625	n:290000
KS ci ratio: 1.834261e-01	ci left: 1.428193e-03	ci right 1.719844e-03	k: 455	n:290000
C1orf129   290000 perm   112 sec   (2589 perm/sec)   p_kst 1.568966e-03   p_cons 7.918103e-01   p_joint 4.841379e-03

Joint ci ratio: 1.029808e-01	ci left: 4.559053e-03	ci right 5.057254e-03	k: 1441	n:300000
Cons ci ratio: 3.670232e-03	ci left: 7.903159e-01	ci right 7.932251e-01	k: 237532	n:300000
KS ci ratio: 1.814491e-01	ci left: 1.412397e-03	ci right 1.697371e-03	k: 465	n:300000
C1orf129   300000 perm   117 sec   (2563 perm/sec)   p_kst 1.550000e-03   p_cons 7.917733e-01   p_joint 4.803333e-03

Joint ci ratio: 1.014798e-01	ci left: 4.547148e-03	ci right 5.036374e-03	k: 1484	n:310000
Cons ci ratio: 3.612200e-03	ci left: 7.901885e-01	ci right 7.930512e-01	k: 245403	n:310000
KS ci ratio: 1.784120e-01	ci left: 1.416124e-03	ci right 1.696552e-03	k: 481	n:310000
C1orf129   310000 perm   122 sec   (2536 perm/sec)   p_kst 1.551613e-03   p_cons 7.916226e-01   p_joint 4.787097e-03

Joint ci ratio: 1.040157e-01	ci left: 4.188835e-03	ci right 4.651460e-03	k: 1413	n:320000
Cons ci ratio: 3.556397e-03	ci left: 7.901102e-01	ci right 7.929282e-01	k: 253287	n:320000
KS ci ratio: 1.749953e-01	ci left: 1.428620e-03	ci right 1.705532e-03	k: 500	n:320000
C1orf129   320000 perm   127 sec   (2511 perm/sec)   p_kst 1.562500e-03   p_cons 7.915219e-01   p_joint 4.415625e-03

Joint ci ratio: 1.025049e-01	ci left: 4.185886e-03	ci right 4.641066e-03	k: 1455	n:330000
Cons ci ratio: 3.503294e-03	ci left: 7.900188e-01	ci right 7.927943e-01	k: 261165	n:330000
KS ci ratio: 1.724331e-01	ci left: 1.428807e-03	ci right 1.701278e-03	k: 515	n:330000
C1orf129   330000 perm   133 sec   (2488 perm/sec)   p_kst 1.560606e-03   p_cons 7.914091e-01   p_joint 4.409091e-03

Joint ci ratio: 9.025423e-02	ci left: 5.268532e-03	ci right 5.769364e-03	k: 1875	n:340000
Cons ci ratio: 3.452869e-03	ci left: 7.898977e-01	ci right 7.926327e-01	k: 269031	n:340000
KS ci ratio: 1.696607e-01	ci left: 1.434643e-03	ci right 1.703378e-03	k: 532	n:340000
C1orf129   340000 perm   138 sec   (2465 perm/sec)   p_kst 1.564706e-03   p_cons 7.912676e-01   p_joint 5.514706e-03

Joint ci ratio: 9.228619e-02	ci left: 4.891812e-03	ci right 5.367867e-03	k: 1794	n:350000
Cons ci ratio: 3.402999e-03	ci left: 7.899355e-01	ci right 7.926311e-01	k: 276950	n:350000
KS ci ratio: 1.671700e-01	ci left: 1.437441e-03	ci right 1.702350e-03	k: 548	n:350000
C1orf129   350000 perm   143 sec   (2443 perm/sec)   p_kst 1.565714e-03   p_cons 7.912857e-01   p_joint 5.125714e-03

Joint ci ratio: 9.112662e-02	ci left: 4.880774e-03	ci right 5.349468e-03	k: 1840	n:360000
Cons ci ratio: 3.356583e-03	ci left: 7.898379e-01	ci right 7.924963e-01	k: 284821	n:360000
KS ci ratio: 1.655211e-01	ci left: 1.426795e-03	ci right 1.686889e-03	k: 559	n:360000
C1orf129   360000 perm   149 sec   (2419 perm/sec)   p_kst 1.552778e-03   p_cons 7.911694e-01   p_joint 5.111111e-03

Joint ci ratio: 9.027454e-02	ci left: 4.841306e-03	ci right 5.301633e-03	k: 1875	n:370000
Cons ci ratio: 3.310797e-03	ci left: 7.898678e-01	ci right 7.924898e-01	k: 292737	n:370000
KS ci ratio: 1.633480e-01	ci left: 1.427105e-03	ci right 1.683505e-03	k: 574	n:370000
C1orf129   370000 perm   154 sec   (2396 perm/sec)   p_kst 1.551351e-03   p_cons 7.911811e-01   p_joint 5.067568e-03

Joint ci ratio: 9.062104e-02	ci left: 4.677876e-03	ci right 5.124462e-03	k: 1861	n:380000
Cons ci ratio: 3.267927e-03	ci left: 7.897855e-01	ci right 7.923732e-01	k: 300611	n:380000
KS ci ratio: 1.619470e-01	ci left: 1.414794e-03	ci right 1.666589e-03	k: 584	n:380000
C1orf129   380000 perm   160 sec   (2371 perm/sec)   p_kst 1.536842e-03   p_cons 7.910816e-01   p_joint 4.897368e-03

Joint ci ratio: 9.011755e-02	ci left: 4.610553e-03	ci right 5.048136e-03	k: 1882	n:390000
Cons ci ratio: 3.225228e-03	ci left: 7.898567e-01	ci right 7.924108e-01	k: 308543	n:390000
KS ci ratio: 1.604465e-01	ci left: 1.405584e-03	ci right 1.653199e-03	k: 595	n:390000
C1orf129   390000 perm   166 sec   (2350 perm/sec)   p_kst 1.525641e-03   p_cons 7.911359e-01   p_joint 4.825641e-03

Joint ci ratio: 8.936327e-02	ci left: 4.573490e-03	ci right 5.003732e-03	k: 1914	n:400000
Cons ci ratio: 3.184907e-03	ci left: 7.898469e-01	ci right 7.923689e-01	k: 316444	n:400000
KS ci ratio: 1.587253e-01	ci left: 1.401646e-03	ci right 1.645666e-03	k: 608	n:400000
C1orf129   400000 perm   172 sec   (2329 perm/sec)   p_kst 1.520000e-03   p_cons 7.911100e-01   p_joint 4.785000e-03

Joint ci ratio: 8.388846e-02	ci left: 5.075257e-03	ci right 5.522022e-03	k: 2171	n:410000
Cons ci ratio: 3.144854e-03	ci left: 7.899648e-01	ci right 7.924555e-01	k: 324397	n:410000
KS ci ratio: 1.564298e-01	ci left: 1.409631e-03	ci right 1.651160e-03	k: 626	n:410000
C1orf129   410000 perm   178 sec   (2307 perm/sec)   p_kst 1.526829e-03   p_cons 7.912122e-01   p_joint 5.295122e-03

Joint ci ratio: 8.456166e-02	ci left: 4.875149e-03	ci right 5.307912e-03	k: 2137	n:420000
Cons ci ratio: 3.107394e-03	ci left: 7.899580e-01	ci right 7.924189e-01	k: 332300	n:420000
KS ci ratio: 1.550762e-01	ci left: 1.401238e-03	ci right 1.639057e-03	k: 637	n:420000
C1orf129   420000 perm   184 sec   (2285 perm/sec)   p_kst 1.516667e-03   p_cons 7.911905e-01   p_joint 5.088095e-03

Joint ci ratio: 8.430948e-02	ci left: 4.791359e-03	ci right 5.215353e-03	k: 2150	n:430000
Cons ci ratio: 3.070679e-03	ci left: 7.900123e-01	ci right 7.924442e-01	k: 340229	n:430000
KS ci ratio: 1.525843e-01	ci left: 1.415609e-03	ci right 1.651654e-03	k: 658	n:430000
C1orf129   430000 perm   190 sec   (2264 perm/sec)   p_kst 1.530233e-03   p_cons 7.912302e-01   p_joint 5.000000e-03

Joint ci ratio: 8.491139e-02	ci left: 4.615708e-03	ci right 5.027218e-03	k: 2120	n:440000
Cons ci ratio: 3.034860e-03	ci left: 7.901053e-01	ci right 7.925090e-01	k: 348176	n:440000
KS ci ratio: 1.509891e-01	ci left: 1.414046e-03	ci right 1.647143e-03	k: 672	n:440000
C1orf129   440000 perm   196 sec   (2244 perm/sec)   p_kst 1.527273e-03   p_cons 7.913091e-01   p_joint 4.818182e-03

Joint ci ratio: 7.797822e-02	ci left: 5.366614e-03	ci right 5.804234e-03	k: 2512	n:450000
Cons ci ratio: 2.999861e-03	ci left: 7.902388e-01	ci right 7.926152e-01	k: 356143	n:450000
KS ci ratio: 1.497708e-01	ci left: 1.406147e-03	ci right 1.635904e-03	k: 683	n:450000
C1orf129   450000 perm   202 sec   (2223 perm/sec)   p_kst 1.517778e-03   p_cons 7.914289e-01   p_joint 5.582222e-03

Joint ci ratio: 7.759583e-02	ci left: 5.303232e-03	ci right 5.733467e-03	k: 2537	n:460000
Cons ci ratio: 2.966397e-03	ci left: 7.903275e-01	ci right 7.926775e-01	k: 364092	n:460000
KS ci ratio: 1.483679e-01	ci left: 1.402785e-03	ci right 1.629655e-03	k: 696	n:460000
C1orf129   460000 perm   209 sec   (2204 perm/sec)   p_kst 1.513043e-03   p_cons 7.915043e-01   p_joint 5.515217e-03

Joint ci ratio: 7.795636e-02	ci left: 5.142396e-03	ci right 5.561609e-03	k: 2514	n:470000
Cons ci ratio: 2.934235e-03	ci left: 7.903891e-01	ci right 7.927137e-01	k: 372030	n:470000
KS ci ratio: 1.471075e-01	ci left: 1.397526e-03	ci right 1.621457e-03	k: 708	n:470000
C1orf129   470000 perm   215 sec   (2185 perm/sec)   p_kst 1.506383e-03   p_cons 7.915532e-01   p_joint 5.348936e-03

Joint ci ratio: 7.762018e-02	ci left: 5.080199e-03	ci right 5.492474e-03	k: 2536	n:480000
Cons ci ratio: 2.904509e-03	ci left: 7.902874e-01	ci right 7.925882e-01	k: 379891	n:480000
KS ci ratio: 1.459800e-01	ci left: 1.390487e-03	ci right 1.611433e-03	k: 719	n:480000
C1orf129   480000 perm   222 sec   (2166 perm/sec)   p_kst 1.497917e-03   p_cons 7.914396e-01   p_joint 5.283333e-03

Joint ci ratio: 7.770139e-02	ci left: 4.966504e-03	ci right 5.369993e-03	k: 2531	n:490000
Cons ci ratio: 2.873588e-03	ci left: 7.904293e-01	ci right 7.927060e-01	k: 387869	n:490000
KS ci ratio: 1.440906e-01	ci left: 1.399479e-03	ci right 1.618728e-03	k: 738	n:490000
C1orf129   490000 perm   228 sec   (2146 perm/sec)   p_kst 1.506122e-03   p_cons 7.915694e-01   p_joint 5.165306e-03

Joint ci ratio: 7.702050e-02	ci left: 4.955432e-03	ci right 5.354335e-03	k: 2576	n:500000
Cons ci ratio: 2.845116e-03	ci left: 7.903933e-01	ci right 7.926473e-01	k: 395761	n:500000
KS ci ratio: 1.428400e-01	ci left: 1.396556e-03	ci right 1.613286e-03	k: 751	n:500000
C1orf129   500000 perm   235 sec   (2127 perm/sec)   p_kst 1.502000e-03   p_cons 7.915220e-01   p_joint 5.152000e-03

Joint ci ratio: 7.624038e-02	ci left: 4.960197e-03	ci right 5.355261e-03	k: 2629	n:510000
Cons ci ratio: 2.816720e-03	ci left: 7.904473e-01	ci right 7.926788e-01	k: 403698	n:510000
KS ci ratio: 1.417142e-01	ci left: 1.391864e-03	ci right 1.606020e-03	k: 763	n:510000
C1orf129   510000 perm   242 sec   (2108 perm/sec)   p_kst 1.496078e-03   p_cons 7.915647e-01   p_joint 5.154902e-03

Joint ci ratio: 7.595446e-02	ci left: 4.902533e-03	ci right 5.291474e-03	k: 2649	n:520000
Cons ci ratio: 2.789661e-03	ci left: 7.904395e-01	ci right 7.926495e-01	k: 411604	n:520000
KS ci ratio: 1.407965e-01	ci left: 1.383648e-03	ci right 1.595046e-03	k: 773	n:520000
C1orf129   520000 perm   249 sec   (2090 perm/sec)   p_kst 1.486538e-03   p_cons 7.915462e-01   p_joint 5.094231e-03

Joint ci ratio: 7.682239e-02	ci left: 4.700819e-03	ci right 5.078209e-03	k: 2590	n:530000
Cons ci ratio: 2.761930e-03	ci left: 7.906042e-01	ci right 7.927926e-01	k: 419601	n:530000
KS ci ratio: 1.392750e-01	ci left: 1.388493e-03	ci right 1.598149e-03	k: 790	n:530000
C1orf129   530000 perm   256 sec   (2072 perm/sec)   p_kst 1.490566e-03   p_cons 7.917000e-01   p_joint 4.886792e-03

Joint ci ratio: 7.609162e-02	ci left: 4.704589e-03	ci right 5.078531e-03	k: 2640	n:540000
Cons ci ratio: 2.735653e-03	ci left: 7.906849e-01	ci right 7.928527e-01	k: 427556	n:540000
KS ci ratio: 1.379729e-01	ci left: 1.389595e-03	ci right 1.597294e-03	k: 805	n:540000
C1orf129   540000 perm   263 sec   (2055 perm/sec)   p_kst 1.490741e-03   p_cons 7.917704e-01   p_joint 4.888889e-03

Joint ci ratio: 7.586445e-02	ci left: 4.647584e-03	ci right 5.015843e-03	k: 2656	n:550000
Cons ci ratio: 2.710142e-03	ci left: 7.907591e-01	ci right 7.929069e-01	k: 435509	n:550000
KS ci ratio: 1.365402e-01	ci left: 1.394178e-03	ci right 1.600222e-03	k: 822	n:550000
C1orf129   550000 perm   270 sec   (2038 perm/sec)   p_kst 1.494545e-03   p_cons 7.918345e-01   p_joint 4.829091e-03

Joint ci ratio: 7.612727e-02	ci left: 4.533050e-03	ci right 4.893532e-03	k: 2638	n:560000
Cons ci ratio: 2.685782e-03	ci left: 7.907753e-01	ci right 7.929038e-01	k: 443431	n:560000
KS ci ratio: 1.357188e-01	ci left: 1.386530e-03	ci right 1.590112e-03	k: 832	n:560000
C1orf129   560000 perm   277 sec   (2022 perm/sec)   p_kst 1.485714e-03   p_cons 7.918411e-01   p_joint 4.710714e-03

Joint ci ratio: 7.760667e-02	ci left: 4.283155e-03	ci right 4.630683e-03	k: 2539	n:570000
Cons ci ratio: 2.662733e-03	ci left: 7.907084e-01	ci right 7.928184e-01	k: 451306	n:570000
KS ci ratio: 1.334146e-01	ci left: 1.411371e-03	ci right 1.614802e-03	k: 861	n:570000
C1orf129   570000 perm   284 sec   (2005 perm/sec)   p_kst 1.510526e-03   p_cons 7.917649e-01   p_joint 4.454386e-03

Joint ci ratio: 7.686846e-02	ci left: 4.292159e-03	ci right 4.636957e-03	k: 2588	n:580000
Cons ci ratio: 2.639453e-03	ci left: 7.907459e-01	ci right 7.928374e-01	k: 459240	n:580000
KS ci ratio: 1.324201e-01	ci left: 1.408705e-03	ci right 1.610120e-03	k: 874	n:580000
C1orf129   580000 perm   292 sec   (1988 perm/sec)   p_kst 1.506897e-03   p_cons 7.917931e-01   p_joint 4.462069e-03

Joint ci ratio: 7.612195e-02	ci left: 4.304199e-03	ci right 4.646457e-03	k: 2639	n:590000
Cons ci ratio: 2.616639e-03	ci left: 7.907991e-01	ci right 7.928727e-01	k: 467184	n:590000
KS ci ratio: 1.312994e-01	ci left: 1.409414e-03	ci right 1.609092e-03	k: 889	n:590000
C1orf129   590000 perm   299 sec   (1972 perm/sec)   p_kst 1.506780e-03   p_cons 7.918373e-01   p_joint 4.472881e-03

Joint ci ratio: 7.555204e-02	ci left: 4.297864e-03	ci right 4.636948e-03	k: 2679	n:600000
Cons ci ratio: 2.594537e-03	ci left: 7.908339e-01	ci right 7.928900e-01	k: 475118	n:600000
KS ci ratio: 1.294922e-01	ci left: 1.426232e-03	ci right 1.625298e-03	k: 914	n:600000
C1orf129   600000 perm   307 sec   (1955 perm/sec)   p_kst 1.523333e-03   p_cons 7.918633e-01   p_joint 4.465000e-03

Joint ci ratio: 7.122599e-02	ci left: 4.764948e-03	ci right 5.118467e-03	k: 3013	n:610000
Cons ci ratio: 2.572730e-03	ci left: 7.909004e-01	ci right 7.929394e-01	k: 483072	n:610000
KS ci ratio: 1.283056e-01	ci left: 1.429821e-03	ci right 1.627420e-03	k: 931	n:610000
C1orf129   610000 perm   314 sec   (1940 perm/sec)   p_kst 1.526230e-03   p_cons 7.919213e-01   p_joint 4.939344e-03

Joint ci ratio: 7.122885e-02	ci left: 4.688087e-03	ci right 5.035919e-03	k: 3013	n:620000
Cons ci ratio: 2.551350e-03	ci left: 7.909795e-01	ci right 7.930017e-01	k: 491035	n:620000
KS ci ratio: 1.270840e-01	ci left: 1.434865e-03	ci right 1.631130e-03	k: 949	n:620000
C1orf129   620000 perm   322 sec   (1924 perm/sec)   p_kst 1.530645e-03   p_cons 7.919919e-01   p_joint 4.859677e-03

Joint ci ratio: 7.610387e-02	ci left: 4.034010e-03	ci right 4.354703e-03	k: 2641	n:630000
Cons ci ratio: 2.530642e-03	ci left: 7.910370e-01	ci right 7.930429e-01	k: 498986	n:630000
KS ci ratio: 1.221021e-01	ci left: 1.533584e-03	ci right 1.734535e-03	k: 1028	n:630000
C1orf129   630000 perm   330 sec   (1909 perm/sec)   p_kst 1.631746e-03   p_cons 7.920413e-01   p_joint 4.192063e-03

Joint ci ratio: 7.571884e-02	ci left: 4.012363e-03	ci right 4.329651e-03	k: 2668	n:640000
Cons ci ratio: 2.510036e-03	ci left: 7.911444e-01	ci right 7.931342e-01	k: 506970	n:640000
KS ci ratio: 1.212219e-01	ci left: 1.532346e-03	ci right 1.731584e-03	k: 1043	n:640000
C1orf129   640000 perm   338 sec   (1894 perm/sec)   p_kst 1.629688e-03   p_cons 7.921406e-01   p_joint 4.168750e-03

Joint ci ratio: 7.424148e-02	ci left: 4.112171e-03	ci right 4.430733e-03	k: 2775	n:650000
Cons ci ratio: 2.491042e-03	ci left: 7.911006e-01	ci right 7.930752e-01	k: 514858	n:650000
KS ci ratio: 1.205887e-01	ci left: 1.525182e-03	ci right 1.722379e-03	k: 1054	n:650000
C1orf129   650000 perm   346 sec   (1879 perm/sec)   p_kst 1.621538e-03   p_cons 7.920892e-01   p_joint 4.269231e-03

Joint ci ratio: 7.358137e-02	ci left: 4.124224e-03	ci right 4.440757e-03	k: 2825	n:660000
Cons ci ratio: 2.471665e-03	ci left: 7.911660e-01	ci right 7.931254e-01	k: 522817	n:660000
KS ci ratio: 1.195171e-01	ci left: 1.529997e-03	ci right 1.725934e-03	k: 1073	n:660000
C1orf129   660000 perm   354 sec   (1864 perm/sec)   p_kst 1.625758e-03   p_cons 7.921470e-01   p_joint 4.280303e-03

Joint ci ratio: 7.301509e-02	ci left: 4.127137e-03	ci right 4.441352e-03	k: 2869	n:670000
Cons ci ratio: 2.453178e-03	ci left: 7.911697e-01	ci right 7.931144e-01	k: 530736	n:670000
KS ci ratio: 1.187458e-01	ci left: 1.527434e-03	ci right 1.721692e-03	k: 1087	n:670000
C1orf129   670000 perm   362 sec   (1849 perm/sec)   p_kst 1.622388e-03   p_cons 7.921433e-01   p_joint 4.282090e-03

Joint ci ratio: 7.238688e-02	ci left: 4.138637e-03	ci right 4.450903e-03	k: 2919	n:680000
Cons ci ratio: 2.435110e-03	ci left: 7.911718e-01	ci right 7.931022e-01	k: 538654	n:680000
KS ci ratio: 1.178288e-01	ci left: 1.529232e-03	ci right 1.722112e-03	k: 1104	n:680000
C1orf129   680000 perm   370 sec   (1835 perm/sec)   p_kst 1.623529e-03   p_cons 7.921382e-01   p_joint 4.292647e-03

Joint ci ratio: 7.182320e-02	ci left: 4.144122e-03	ci right 4.454266e-03	k: 2965	n:690000
Cons ci ratio: 2.417532e-03	ci left: 7.911609e-01	ci right 7.930773e-01	k: 546563	n:690000
KS ci ratio: 1.169849e-01	ci left: 1.529577e-03	ci right 1.721023e-03	k: 1120	n:690000
C1orf129   690000 perm   379 sec   (1822 perm/sec)   p_kst 1.623188e-03   p_cons 7.921203e-01   p_joint 4.297101e-03

Joint ci ratio: 7.161958e-02	ci left: 4.108768e-03	ci right 4.415357e-03	k: 2982	n:700000
Cons ci ratio: 2.400079e-03	ci left: 7.911846e-01	ci right 7.930872e-01	k: 554496	n:700000
KS ci ratio: 1.160567e-01	ci left: 1.532691e-03	ci right 1.722900e-03	k: 1138	n:700000
C1orf129   700000 perm   387 sec   (1809 perm/sec)   p_kst 1.625714e-03   p_cons 7.921371e-01   p_joint 4.260000e-03

Joint ci ratio: 7.203517e-02	ci left: 4.003863e-03	ci right 4.304431e-03	k: 2948	n:710000
Cons ci ratio: 2.383783e-03	ci left: 7.910992e-01	ci right 7.929886e-01	k: 562352	n:710000
KS ci ratio: 1.152001e-01	ci left: 1.534355e-03	ci right 1.723270e-03	k: 1155	n:710000
C1orf129   710000 perm   396 sec   (1795 perm/sec)   p_kst 1.626761e-03   p_cons 7.920451e-01   p_joint 4.152113e-03

Joint ci ratio: 7.143173e-02	ci left: 4.016453e-03	ci right 4.315336e-03	k: 2998	n:720000
Cons ci ratio: 2.367675e-03	ci left: 7.910356e-01	ci right 7.929121e-01	k: 570222	n:720000
KS ci ratio: 1.141189e-01	ci left: 1.542724e-03	ci right 1.730767e-03	k: 1177	n:720000
C1orf129   720000 perm   404 sec   (1781 perm/sec)   p_kst 1.634722e-03   p_cons 7.919750e-01   p_joint 4.163889e-03

Joint ci ratio: 7.112485e-02	ci left: 3.996413e-03	ci right 4.292474e-03	k: 3024	n:730000
Cons ci ratio: 2.351165e-03	ci left: 7.910753e-01	ci right 7.929388e-01	k: 578166	n:730000
KS ci ratio: 1.133517e-01	ci left: 1.542885e-03	ci right 1.729599e-03	k: 1193	n:730000
C1orf129   730000 perm   413 sec   (1768 perm/sec)   p_kst 1.634247e-03   p_cons 7.920082e-01   p_joint 4.142466e-03

Joint ci ratio: 6.982911e-02	ci left: 4.092426e-03	ci right 4.389853e-03	k: 3137	n:740000
Cons ci ratio: 2.335599e-03	ci left: 7.910288e-01	ci right 7.928798e-01	k: 586047	n:740000
KS ci ratio: 1.127399e-01	ci left: 1.539106e-03	ci right 1.724290e-03	k: 1206	n:740000
C1orf129   740000 perm   422 sec   (1756 perm/sec)   p_kst 1.629730e-03   p_cons 7.919554e-01   p_joint 4.239189e-03

Joint ci ratio: 6.963083e-02	ci left: 4.061440e-03	ci right 4.355743e-03	k: 3155	n:750000
Cons ci ratio: 2.320347e-03	ci left: 7.909821e-01	ci right 7.928209e-01	k: 593927	n:750000
KS ci ratio: 1.120000e-01	ci left: 1.539318e-03	ci right 1.723232e-03	k: 1222	n:750000
C1orf129   750000 perm   430 sec   (1743 perm/sec)   p_kst 1.629333e-03   p_cons 7.919027e-01   p_joint 4.206667e-03

Joint ci ratio: 6.918295e-02	ci left: 4.061011e-03	ci right 4.353314e-03	k: 3196	n:760000
Cons ci ratio: 2.305096e-03	ci left: 7.909790e-01	ci right 7.928056e-01	k: 601839	n:760000
KS ci ratio: 1.111399e-01	ci left: 1.543366e-03	ci right 1.726255e-03	k: 1241	n:760000
C1orf129   760000 perm   439 sec   (1730 perm/sec)   p_kst 1.632895e-03   p_cons 7.918934e-01   p_joint 4.205263e-03

Joint ci ratio: 6.875427e-02	ci left: 4.059323e-03	ci right 4.349621e-03	k: 3236	n:770000
Cons ci ratio: 2.289889e-03	ci left: 7.910123e-01	ci right 7.928270e-01	k: 609779	n:770000
KS ci ratio: 1.101680e-01	ci left: 1.551104e-03	ci right 1.733198e-03	k: 1263	n:770000
C1orf129   770000 perm   448 sec   (1718 perm/sec)   p_kst 1.640260e-03   p_cons 7.919208e-01   p_joint 4.202597e-03

Joint ci ratio: 6.843839e-02	ci left: 4.045081e-03	ci right 4.332979e-03	k: 3266	n:780000
Cons ci ratio: 2.275173e-03	ci left: 7.910166e-01	ci right 7.928196e-01	k: 617697	n:780000
KS ci ratio: 1.096921e-01	ci left: 1.544932e-03	ci right 1.725468e-03	k: 1274	n:780000
C1orf129   780000 perm   457 sec   (1706 perm/sec)   p_kst 1.633333e-03   p_cons 7.919192e-01   p_joint 4.187179e-03

Joint ci ratio: 6.794084e-02	ci left: 4.053601e-03	ci right 4.339926e-03	k: 3314	n:790000
Cons ci ratio: 2.260356e-03	ci left: 7.910767e-01	ci right 7.928680e-01	k: 625659	n:790000
KS ci ratio: 1.087995e-01	ci left: 1.551232e-03	ci right 1.730934e-03	k: 1295	n:790000
C1orf129   790000 perm   466 sec   (1694 perm/sec)   p_kst 1.639241e-03   p_cons 7.919734e-01   p_joint 4.194937e-03

Joint ci ratio: 6.744392e-02	ci left: 4.063145e-03	ci right 4.347963e-03	k: 3363	n:800000
Cons ci ratio: 2.245773e-03	ci left: 7.911427e-01	ci right 7.929227e-01	k: 633627	n:800000
KS ci ratio: 1.080104e-01	ci left: 1.554948e-03	ci right 1.733691e-03	k: 1314	n:800000
C1orf129   800000 perm   476 sec   (1682 perm/sec)   p_kst 1.642500e-03   p_cons 7.920337e-01   p_joint 4.203750e-03

Joint ci ratio: 6.831786e-02	ci left: 3.909815e-03	ci right 4.187577e-03	k: 3278	n:810000
Cons ci ratio: 2.232305e-03	ci left: 7.910835e-01	ci right 7.928526e-01	k: 641495	n:810000
KS ci ratio: 1.074402e-01	ci left: 1.552569e-03	ci right 1.730037e-03	k: 1328	n:810000
C1orf129   810000 perm   485 sec   (1670 perm/sec)   p_kst 1.639506e-03   p_cons 7.919691e-01   p_joint 4.046914e-03

Joint ci ratio: 6.787416e-02	ci left: 3.913681e-03	ci right 4.189841e-03	k: 3321	n:820000
Cons ci ratio: 2.218411e-03	ci left: 7.911248e-01	ci right 7.928829e-01	k: 649444	n:820000
KS ci ratio: 1.068390e-01	ci left: 1.551438e-03	ci right 1.727722e-03	k: 1343	n:820000
C1orf129   820000 perm   494 sec   (1659 perm/sec)   p_kst 1.637805e-03   p_cons 7.920049e-01   p_joint 4.050000e-03

Joint ci ratio: 6.775307e-02	ci left: 3.880739e-03	ci right 4.154066e-03	k: 3333	n:830000
Cons ci ratio: 2.204765e-03	ci left: 7.911662e-01	ci right 7.929137e-01	k: 657394	n:830000
KS ci ratio: 1.061306e-01	ci left: 1.553855e-03	ci right 1.729170e-03	k: 1361	n:830000
C1orf129   830000 perm   504 sec   (1648 perm/sec)   p_kst 1.639759e-03   p_cons 7.920410e-01   p_joint 4.015663e-03

Joint ci ratio: 6.514772e-02	ci left: 4.151818e-03	ci right 4.432569e-03	k: 3604	n:840000
Cons ci ratio: 2.191518e-03	ci left: 7.911841e-01	ci right 7.929210e-01	k: 665325	n:840000
KS ci ratio: 1.054361e-01	ci left: 1.556219e-03	ci right 1.730580e-03	k: 1379	n:840000
C1orf129   840000 perm   513 sec   (1637 perm/sec)   p_kst 1.641667e-03   p_cons 7.920536e-01   p_joint 4.290476e-03

Joint ci ratio: 6.499565e-02	ci left: 4.122646e-03	ci right 4.400749e-03	k: 3621	n:850000
Cons ci ratio: 2.178328e-03	ci left: 7.912287e-01	ci right 7.929552e-01	k: 673279	n:850000
KS ci ratio: 1.047550e-01	ci left: 1.558530e-03	ci right 1.731953e-03	k: 1397	n:850000
C1orf129   850000 perm   523 sec   (1625 perm/sec)   p_kst 1.643529e-03   p_cons 7.920929e-01   p_joint 4.260000e-03

Joint ci ratio: 6.559095e-02	ci left: 4.000352e-03	ci right 4.272772e-03	k: 3556	n:860000
Cons ci ratio: 2.165481e-03	ci left: 7.912559e-01	ci right 7.929724e-01	k: 681219	n:860000
KS ci ratio: 1.040870e-01	ci left: 1.560792e-03	ci right 1.733291e-03	k: 1415	n:860000
C1orf129   860000 perm   533 sec   (1615 perm/sec)   p_kst 1.645349e-03   p_cons 7.921151e-01   p_joint 4.134884e-03

Joint ci ratio: 6.066815e-02	ci left: 4.630937e-03	ci right 4.921800e-03	k: 4154	n:870000
Cons ci ratio: 2.152918e-03	ci left: 7.912734e-01	ci right 7.929799e-01	k: 689151	n:870000
KS ci ratio: 1.036490e-01	ci left: 1.556286e-03	ci right 1.727519e-03	k: 1427	n:870000
C1orf129   870000 perm   542 sec   (1604 perm/sec)   p_kst 1.640230e-03   p_cons 7.921276e-01   p_joint 4.774713e-03

Joint ci ratio: 6.183958e-02	ci left: 4.404858e-03	ci right 4.687055e-03	k: 3999	n:880000
Cons ci ratio: 2.140409e-03	ci left: 7.913155e-01	ci right 7.930121e-01	k: 697105	n:880000
KS ci ratio: 1.030374e-01	ci left: 1.557420e-03	ci right 1.727706e-03	k: 1444	n:880000
C1orf129   880000 perm   552 sec   (1593 perm/sec)   p_kst 1.640909e-03   p_cons 7.921648e-01   p_joint 4.544318e-03

Joint ci ratio: 6.144889e-02	ci left: 4.411786e-03	ci right 4.692577e-03	k: 4050	n:890000
Cons ci ratio: 2.128732e-03	ci left: 7.912610e-01	ci right 7.929483e-01	k: 704974	n:890000
KS ci ratio: 1.023665e-01	ci left: 1.560721e-03	ci right 1.730190e-03	k: 1463	n:890000
C1orf129   890000 perm   562 sec   (1583 perm/sec)   p_kst 1.643820e-03   p_cons 7.921056e-01   p_joint 4.550562e-03

Joint ci ratio: 6.118551e-02	ci left: 4.401058e-03	ci right 4.679923e-03	k: 4085	n:900000
Cons ci ratio: 2.116759e-03	ci left: 7.912835e-01	ci right 7.929613e-01	k: 712911	n:900000
KS ci ratio: 1.019152e-01	ci left: 1.557455e-03	ci right 1.725779e-03	k: 1476	n:900000
C1orf129   900000 perm   572 sec   (1573 perm/sec)   p_kst 1.640000e-03   p_cons 7.921233e-01   p_joint 4.538889e-03

Joint ci ratio: 6.097752e-02	ci left: 4.382993e-03	ci right 4.659736e-03	k: 4113	n:910000
Cons ci ratio: 2.105716e-03	ci left: 7.911910e-01	ci right 7.928599e-01	k: 720744	n:910000
KS ci ratio: 1.014357e-01	ci left: 1.555333e-03	ci right 1.722590e-03	k: 1490	n:910000
C1orf129   910000 perm   582 sec   (1563 perm/sec)   p_kst 1.637363e-03   p_cons 7.920264e-01   p_joint 4.519780e-03

Joint ci ratio: 6.128655e-02	ci left: 4.291462e-03	ci right 4.563847e-03	k: 4072	n:920000
Cons ci ratio: 2.094173e-03	ci left: 7.912062e-01	ci right 7.928659e-01	k: 728674	n:920000
KS ci ratio: 1.007620e-01	ci left: 1.559617e-03	ci right 1.726154e-03	k: 1510	n:920000
C1orf129   920000 perm   593 sec   (1552 perm/sec)   p_kst 1.641304e-03   p_cons 7.920370e-01   p_joint 4.426087e-03

Joint ci ratio: 6.116746e-02	ci left: 4.262256e-03	ci right 4.532243e-03	k: 4088	n:930000
Cons ci ratio: 2.083084e-03	ci left: 7.911790e-01	ci right 7.928299e-01	k: 736565	n:930000
KS ci ratio: 1.002656e-01	ci left: 1.558571e-03	ci right 1.724128e-03	k: 1525	n:930000
C1orf129   930000 perm   603 sec   (1542 perm/sec)   p_kst 1.639785e-03   p_cons 7.920054e-01   p_joint 4.395699e-03

Joint ci ratio: 6.362200e-02	ci left: 3.894339e-03	ci right 4.151285e-03	k: 3780	n:940000
Cons ci ratio: 2.072008e-03	ci left: 7.911781e-01	ci right 7.928201e-01	k: 744480	n:940000
KS ci ratio: 1.051026e-01	ci left: 1.399980e-03	ci right 1.556309e-03	k: 1388	n:940000
C1orf129   940000 perm   614 sec   (1532 perm/sec)   p_kst 1.476596e-03   p_cons 7.920000e-01   p_joint 4.021277e-03

Joint ci ratio: 6.321341e-02	ci left: 3.904108e-03	ci right 4.159983e-03	k: 3829	n:950000
Cons ci ratio: 2.061073e-03	ci left: 7.911824e-01	ci right 7.928158e-01	k: 752400	n:950000
KS ci ratio: 1.045024e-01	ci left: 1.401644e-03	ci right 1.557210e-03	k: 1404	n:950000
C1orf129   950000 perm   624 sec   (1522 perm/sec)   p_kst 1.477895e-03   p_cons 7.920000e-01   p_joint 4.030526e-03

Joint ci ratio: 6.296763e-02	ci left: 3.894197e-03	ci right 4.148394e-03	k: 3859	n:960000
Cons ci ratio: 2.049973e-03	ci left: 7.912409e-01	ci right 7.928656e-01	k: 760372	n:960000
KS ci ratio: 1.039857e-01	ci left: 1.401247e-03	ci right 1.555953e-03	k: 1418	n:960000
C1orf129   960000 perm   635 sec   (1512 perm/sec)   p_kst 1.477083e-03   p_cons 7.920542e-01   p_joint 4.019792e-03

Joint ci ratio: 6.263583e-02	ci left: 3.895655e-03	ci right 4.148558e-03	k: 3900	n:970000
Cons ci ratio: 2.039427e-03	ci left: 7.912374e-01	ci right 7.928537e-01	k: 768285	n:970000
KS ci ratio: 1.035127e-01	ci left: 1.399855e-03	ci right 1.553662e-03	k: 1431	n:970000
C1orf129   970000 perm   645 sec   (1503 perm/sec)   p_kst 1.475258e-03   p_cons 7.920464e-01   p_joint 4.020619e-03

Joint ci ratio: 6.231716e-02	ci left: 3.896082e-03	ci right 4.147680e-03	k: 3940	n:980000
Cons ci ratio: 2.029149e-03	ci left: 7.912165e-01	ci right 7.928246e-01	k: 776181	n:980000
KS ci ratio: 1.031534e-01	ci left: 1.395511e-03	ci right 1.548276e-03	k: 1441	n:980000
C1orf129   980000 perm   656 sec   (1494 perm/sec)   p_kst 1.470408e-03   p_cons 7.920214e-01   p_joint 4.020408e-03

Joint ci ratio: 6.204243e-02	ci left: 3.891531e-03	ci right 4.141688e-03	k: 3975	n:990000
Cons ci ratio: 2.018468e-03	ci left: 7.912871e-01	ci right 7.928869e-01	k: 784167	n:990000
KS ci ratio: 1.027978e-01	ci left: 1.391256e-03	ci right 1.542998e-03	k: 1451	n:990000
C1orf129   990000 perm   667 sec   (1484 perm/sec)   p_kst 1.465657e-03   p_cons 7.920879e-01   p_joint 4.015152e-03

Joint ci ratio: 6.170955e-02	ci left: 3.894951e-03	ci right 4.143936e-03	k: 4018	n:1000000
Cons ci ratio: 2.008063e-03	ci left: 7.913383e-01	ci right 7.929300e-01	k: 792135	n:1000000
KS ci ratio: 1.020274e-01	ci left: 1.398780e-03	ci right 1.550131e-03	k: 1473	n:1000000
C1orf129   1000000 perm   678 sec   (1475 perm/sec)   p_kst 1.473000e-03   p_cons 7.921350e-01   p_joint 4.018000e-03

Joint ci ratio: 6.192774e-02	ci left: 3.829089e-03	ci right 4.074760e-03	k: 3990	n:1010000
Cons ci ratio: 1.998388e-03	ci left: 7.912944e-01	ci right 7.928782e-01	k: 800008	n:1010000
KS ci ratio: 1.013419e-01	ci left: 1.404229e-03	ci right 1.555088e-03	k: 1493	n:1010000
C1orf129   1010000 perm   689 sec   (1465 perm/sec)   p_kst 1.478218e-03   p_cons 7.920871e-01   p_joint 3.950495e-03

Joint ci ratio: 6.213245e-02	ci left: 3.766450e-03	ci right 4.008930e-03	k: 3964	n:1020000
Cons ci ratio: 1.988679e-03	ci left: 7.912797e-01	ci right 7.928559e-01	k: 807910	n:1020000
KS ci ratio: 1.009375e-01	ci left: 1.401929e-03	ci right 1.551905e-03	k: 1505	n:1020000
C1orf129   1020000 perm   700 sec   (1456 perm/sec)   p_kst 1.475490e-03   p_cons 7.920686e-01   p_joint 3.886275e-03

Joint ci ratio: 6.179814e-02	ci left: 3.770983e-03	ci right 4.012402e-03	k: 4007	n:1030000
Cons ci ratio: 1.978918e-03	ci left: 7.912975e-01	ci right 7.928659e-01	k: 815845	n:1030000
KS ci ratio: 1.004055e-01	ci left: 1.403461e-03	ci right 1.552763e-03	k: 1521	n:1030000
C1orf129   1030000 perm   712 sec   (1447 perm/sec)   p_kst 1.476699e-03   p_cons 7.920825e-01   p_joint 3.890291e-03

Joint ci ratio: 6.143871e-02	ci left: 3.779220e-03	ci right 4.019709e-03	k: 4054	n:1040000
Cons ci ratio: 1.969610e-03	ci left: 7.912629e-01	ci right 7.928239e-01	k: 823726	n:1040000
KS ci ratio: 9.994689e-02	ci left: 1.403091e-03	ci right 1.551631e-03	k: 1535	n:1040000
C1orf129   1040000 perm   723 sec   (1438 perm/sec)   p_kst 1.475962e-03   p_cons 7.920442e-01   p_joint 3.898077e-03

Outputting figure to mutsig2_images.part000000000022/C1orf129.10_2796_1040000_0.001476_0.79204_0.0038981.png
                gene_name: C1orf129
               theta_stop: 0.100 
                    nperm: 1040000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0040 

Current progress: 3 percent done.
C1orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
C1orf125   10000 perm   2 sec   (4435 perm/sec)   p_kst 9.512000e-01   p_cons 7.730000e-02   p_joint 2.708000e-01

Joint ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
Cons ci ratio: 9.509900e-02	ci left: 7.456446e-02	ci right 8.205869e-02	k: 1565	n:20000
KS ci ratio: 6.284301e-03	ci left: 9.480714e-01	ci right 9.540966e-01	k: 19023	n:20000
C1orf125   20000 perm   5 sec   (4077 perm/sec)   p_kst 9.511500e-01   p_cons 7.825000e-02   p_joint 2.616000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf125.8_3139_20000_0.95115_0.07825_0.2616.png
                gene_name: C1orf125
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 7 percent done.
C19orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
Cons ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
C19orf51   10000 perm   2 sec   (5062 perm/sec)   p_kst 7.400000e-02   p_cons 4.097000e-01   p_joint 1.581000e-01

Joint ci ratio: 6.621623e-02	ci left: 1.441405e-01	ci right 1.540617e-01	k: 2981	n:20000
Cons ci ratio: 3.358000e-02	ci left: 3.983854e-01	ci right 4.120422e-01	k: 8104	n:20000
KS ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
C19orf51   20000 perm   4 sec   (4566 perm/sec)   p_kst 7.635000e-02   p_cons 4.052000e-01   p_joint 1.490500e-01

Outputting figure to mutsig2_images.part000000000022/C19orf51.6_1815_20000_0.07635_0.4052_0.14905.png
                gene_name: C19orf51
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 10 percent done.
C1orf107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
Cons ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
C1orf107   10000 perm   2 sec   (4822 perm/sec)   p_kst 6.942000e-01   p_cons 1.044000e-01   p_joint 2.722000e-01

Joint ci ratio: 3.396263e-02	ci left: 3.929512e-01	ci right 4.065780e-01	k: 7995	n:20000
Cons ci ratio: 7.878237e-02	ci left: 1.057938e-01	ci right 1.145199e-01	k: 2202	n:20000
KS ci ratio: 1.840515e-02	ci left: 6.875605e-01	ci right 7.003831e-01	k: 13880	n:20000
C1orf107   20000 perm   5 sec   (4360 perm/sec)   p_kst 6.940000e-01   p_cons 1.101000e-01   p_joint 3.997500e-01

Outputting figure to mutsig2_images.part000000000022/C1orf107.6_2319_20000_0.694_0.1101_0.39975.png
                gene_name: C1orf107
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 13 percent done.
C1orf110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.171434e-02	ci left: 7.567657e-01	ci right 7.734796e-01	k: 7652	n:10000
Cons ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
KS ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
C1orf110   10000 perm   2 sec   (5405 perm/sec)   p_kst 7.388000e-01   p_cons 4.362000e-01   p_joint 7.652000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf110.6_921_10000_0.7388_0.4362_0.7652.png
                gene_name: C1orf110
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 17 percent done.
C1orf112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
KS ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
C1orf112   10000 perm   2 sec   (5138 perm/sec)   p_kst 3.645000e-01   p_cons 3.307000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf112.6_2650_10000_0.3645_0.3307_0.279.png
                gene_name: C1orf112
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 20 percent done.
C1orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
Cons ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
KS ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
C1orf101   10000 perm   2 sec   (4695 perm/sec)   p_kst 4.662000e-01   p_cons 6.661000e-01   p_joint 6.055000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf101.5_2944_10000_0.4662_0.6661_0.6055.png
                gene_name: C1orf101
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 23 percent done.
C1orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
Cons ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KS ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
C1orf103   10000 perm   2 sec   (5605 perm/sec)   p_kst 6.468000e-01   p_cons 5.370000e-01   p_joint 8.142000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf103.5_2326_10000_0.6468_0.537_0.8142.png
                gene_name: C1orf103
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 27 percent done.
C1orf105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
KS ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
C1orf105   10000 perm   2 sec   (5934 perm/sec)   p_kst 2.713000e-01   p_cons 2.498000e-01   p_joint 2.158000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf105.5_580_10000_0.2713_0.2498_0.2158.png
                gene_name: C1orf105
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
C1orf141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
KS ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
C1orf141   10000 perm   2 sec   (5789 perm/sec)   p_kst 9.369000e-01   p_cons 7.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf141.5_1227_10000_0.9369_0.7582_1.png
                gene_name: C1orf141
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
C1orf106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
Cons ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
C1orf106   10000 perm   2 sec   (5745 perm/sec)   p_kst 4.256000e-01   p_cons 2.954000e-01   p_joint 5.662000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf106.4_2032_10000_0.4256_0.2954_0.5662.png
                gene_name: C1orf106
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 37 percent done.
C1orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
C1orf114   10000 perm   2 sec   (5509 perm/sec)   p_kst 6.279000e-01   p_cons 2.401000e-01   p_joint 4.832000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf114.4_1547_10000_0.6279_0.2401_0.4832.png
                gene_name: C1orf114
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 40 percent done.
C1orf116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
C1orf116   10000 perm   2 sec   (5635 perm/sec)   p_kst 1.611000e-01   p_cons 1.096000e-01   p_joint 9.430000e-02

Joint ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
Cons ci ratio: 7.488375e-02	ci left: 1.159695e-01	ci right 1.250412e-01	k: 2409	n:20000
KS ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
C1orf116   20000 perm   4 sec   (4973 perm/sec)   p_kst 1.718000e-01   p_cons 1.204500e-01   p_joint 7.020000e-02

Joint ci ratio: 6.794585e-02	ci left: 9.646329e-02	ci right 1.032811e-01	k: 2995	n:30000
Cons ci ratio: 6.098934e-02	ci left: 1.173297e-01	ci right 1.247438e-01	k: 3630	n:30000
KS ci ratio: 4.908268e-02	ci left: 1.710124e-01	ci right 1.796506e-01	k: 5259	n:30000
C1orf116   30000 perm   6 sec   (4707 perm/sec)   p_kst 1.753000e-01   p_cons 1.210000e-01   p_joint 9.983333e-02

Outputting figure to mutsig2_images.part000000000022/C1orf116.4_1818_30000_0.1753_0.121_0.099833.png
                gene_name: C1orf116
               theta_stop: 0.068 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 43 percent done.
C1orf127
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 1.999184e-02	ci left: 7.855326e-01	ci right 8.014960e-01	k: 7936	n:10000
KS ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
C1orf127   10000 perm   2 sec   (5545 perm/sec)   p_kst 6.890000e-02   p_cons 7.936000e-01   p_joint 1.923000e-01

Joint ci ratio: 5.649787e-02	ci left: 1.884901e-01	ci right 1.994991e-01	k: 3879	n:20000
Cons ci ratio: 1.418576e-02	ci left: 7.867621e-01	ci right 7.980528e-01	k: 15849	n:20000
KS ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
C1orf127   20000 perm   4 sec   (4890 perm/sec)   p_kst 7.145000e-02   p_cons 7.924500e-01   p_joint 1.939500e-01

Outputting figure to mutsig2_images.part000000000022/C1orf127.4_2520_20000_0.07145_0.79245_0.19395.png
                gene_name: C1orf127
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 47 percent done.
C19orf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
Cons ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
C19orf61   10000 perm   2 sec   (5849 perm/sec)   p_kst 3.200000e-02   p_cons 8.770000e-02   p_joint 1.720000e-02

Joint ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
Cons ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
KS ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
C19orf61   20000 perm   4 sec   (5137 perm/sec)   p_kst 3.200000e-02   p_cons 8.780000e-02   p_joint 2.320000e-02

Joint ci ratio: 1.309572e-01	ci left: 2.709791e-02	ci right 3.092736e-02	k: 869	n:30000
Cons ci ratio: 6.728660e-02	ci left: 9.820326e-02	ci right 1.050741e-01	k: 3048	n:30000
KS ci ratio: 1.244079e-01	ci left: 3.003717e-02	ci right 3.405413e-02	k: 960	n:30000
C19orf61   30000 perm   6 sec   (4871 perm/sec)   p_kst 3.200000e-02   p_cons 1.016000e-01   p_joint 2.896667e-02

Joint ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
Cons ci ratio: 5.781670e-02	ci left: 1.000870e-01	ci right 1.060708e-01	k: 4122	n:40000
KS ci ratio: 1.094891e-01	ci left: 2.934747e-02	ci right 3.277106e-02	k: 1241	n:40000
C19orf61   40000 perm   8 sec   (4706 perm/sec)   p_kst 3.102500e-02   p_cons 1.030500e-01   p_joint 1.740000e-02

Joint ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
Cons ci ratio: 5.176193e-02	ci left: 1.002302e-01	ci right 1.055760e-01	k: 5144	n:50000
KS ci ratio: 9.707845e-02	ci left: 3.004486e-02	ci right 3.312984e-02	k: 1578	n:50000
C19orf61   50000 perm   11 sec   (4537 perm/sec)   p_kst 3.156000e-02   p_cons 1.028800e-01   p_joint 2.206000e-02

Joint ci ratio: 1.563596e-01	ci left: 9.555608e-03	ci right 1.119227e-02	k: 621	n:60000
Cons ci ratio: 5.062985e-02	ci left: 8.852894e-02	ci right 9.314406e-02	k: 5449	n:60000
KS ci ratio: 8.854305e-02	ci left: 3.023094e-02	ci right 3.304794e-02	k: 1897	n:60000
C19orf61   60000 perm   14 sec   (4429 perm/sec)   p_kst 3.161667e-02   p_cons 9.081667e-02   p_joint 1.035000e-02

Joint ci ratio: 1.555957e-01	ci left: 8.286188e-03	ci right 9.697821e-03	k: 628	n:70000
Cons ci ratio: 4.668598e-02	ci left: 8.935983e-02	ci right 9.364553e-02	k: 6404	n:70000
KS ci ratio: 8.252181e-02	ci left: 2.993838e-02	ci right 3.252924e-02	k: 2185	n:70000
C19orf61   70000 perm   16 sec   (4334 perm/sec)   p_kst 3.121429e-02   p_cons 9.148571e-02   p_joint 8.971429e-03

Joint ci ratio: 1.416095e-01	ci left: 8.815272e-03	ci right 1.017066e-02	k: 758	n:80000
Cons ci ratio: 4.361177e-02	ci left: 8.972108e-02	ci right 9.373358e-02	k: 7337	n:80000
KS ci ratio: 7.409923e-02	ci left: 3.254614e-02	ci right 3.506281e-02	k: 2703	n:80000
C19orf61   80000 perm   19 sec   (4242 perm/sec)   p_kst 3.378750e-02   p_cons 9.171250e-02   p_joint 9.475000e-03

Joint ci ratio: 1.309698e-01	ci left: 9.209704e-03	ci right 1.051107e-02	k: 886	n:90000
Cons ci ratio: 4.113200e-02	ci left: 8.977809e-02	ci right 9.355938e-02	k: 8249	n:90000
KS ci ratio: 6.992097e-02	ci left: 3.256331e-02	ci right 3.493354e-02	k: 3036	n:90000
C19orf61   90000 perm   22 sec   (4159 perm/sec)   p_kst 3.373333e-02   p_cons 9.165556e-02   p_joint 9.844444e-03

Joint ci ratio: 1.268453e-01	ci left: 8.859606e-03	ci right 1.006910e-02	k: 945	n:100000
Cons ci ratio: 3.896902e-02	ci left: 9.009654e-02	ci right 9.368718e-02	k: 9188	n:100000
KS ci ratio: 6.641894e-02	ci left: 3.254089e-02	ci right 3.478627e-02	k: 3365	n:100000
C19orf61   100000 perm   24 sec   (4084 perm/sec)   p_kst 3.365000e-02   p_cons 9.188000e-02   p_joint 9.450000e-03

Joint ci ratio: 1.195922e-01	ci left: 9.093933e-03	ci right 1.025941e-02	k: 1063	n:110000
Cons ci ratio: 3.718773e-02	ci left: 9.003680e-02	ci right 9.345749e-02	k: 10091	n:110000
KS ci ratio: 6.334217e-02	ci left: 3.257869e-02	ci right 3.471871e-02	k: 3700	n:110000
C19orf61   110000 perm   27 sec   (4015 perm/sec)   p_kst 3.363636e-02   p_cons 9.173636e-02   p_joint 9.663636e-03

Joint ci ratio: 1.154960e-01	ci left: 8.958871e-03	ci right 1.006503e-02	k: 1140	n:120000
Cons ci ratio: 3.560892e-02	ci left: 9.008936e-02	ci right 9.336374e-02	k: 11006	n:120000
KS ci ratio: 6.065684e-02	ci left: 3.261221e-02	ci right 3.466041e-02	k: 4035	n:120000
C19orf61   120000 perm   30 sec   (3949 perm/sec)   p_kst 3.362500e-02   p_cons 9.171667e-02   p_joint 9.500000e-03

Joint ci ratio: 1.111050e-01	ci left: 8.957366e-03	ci right 1.001853e-02	k: 1232	n:130000
Cons ci ratio: 3.420445e-02	ci left: 9.018987e-02	ci right 9.333606e-02	k: 11928	n:130000
KS ci ratio: 5.839018e-02	ci left: 3.252843e-02	ci right 3.449245e-02	k: 4355	n:130000
C19orf61   130000 perm   33 sec   (3885 perm/sec)   p_kst 3.350000e-02   p_cons 9.175385e-02   p_joint 9.476923e-03

Joint ci ratio: 1.066928e-01	ci left: 9.040202e-03	ci right 1.006598e-02	k: 1336	n:140000
Cons ci ratio: 3.291177e-02	ci left: 9.049091e-02	ci right 9.352602e-02	k: 12880	n:140000
KS ci ratio: 5.619235e-02	ci left: 3.264809e-02	ci right 3.454272e-02	k: 4702	n:140000
C19orf61   140000 perm   37 sec   (3824 perm/sec)   p_kst 3.358571e-02   p_cons 9.200000e-02   p_joint 9.542857e-03

Joint ci ratio: 1.024808e-01	ci left: 9.164690e-03	ci right 1.016107e-02	k: 1448	n:150000
Cons ci ratio: 3.188247e-02	ci left: 9.009184e-02	ci right 9.301731e-02	k: 13732	n:150000
KS ci ratio: 5.424761e-02	ci left: 3.272668e-02	ci right 3.455807e-02	k: 5045	n:150000
C19orf61   150000 perm   40 sec   (3767 perm/sec)   p_kst 3.363333e-02   p_cons 9.154667e-02   p_joint 9.653333e-03

Joint ci ratio: 9.950657e-02	ci left: 9.127996e-03	ci right 1.008990e-02	k: 1536	n:160000
Cons ci ratio: 3.088229e-02	ci left: 9.007293e-02	ci right 9.290439e-02	k: 14637	n:160000
KS ci ratio: 5.249173e-02	ci left: 3.279643e-02	ci right 3.457052e-02	k: 5388	n:160000
C19orf61   160000 perm   43 sec   (3703 perm/sec)   p_kst 3.367500e-02   p_cons 9.148125e-02   p_joint 9.600000e-03

Outputting figure to mutsig2_images.part000000000022/C19orf61.3_1615_160000_0.033675_0.091481_0.0096.png
                gene_name: C19orf61
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.0096 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.010 

Current progress: 50 percent done.
C19orf75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
KS ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
C19orf75   10000 perm   1 sec   (7365 perm/sec)   p_kst 2.955000e-01   p_cons 1.842000e-01   p_joint 2.607000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf75.3_614_10000_0.2955_0.1842_0.2607.png
                gene_name: C19orf75
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
C1QC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
Cons ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
C1QC   10000 perm   2 sec   (6349 perm/sec)   p_kst 7.735000e-01   p_cons 1.409000e-01   p_joint 2.948000e-01

Outputting figure to mutsig2_images.part000000000022/C1QC.3_746_10000_0.7735_0.1409_0.2948.png
                gene_name: C1QC
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 57 percent done.
C1QTNF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
C1QTNF9   10000 perm   2 sec   (6250 perm/sec)   p_kst 4.095000e-01   p_cons 4.053000e-01   p_joint 5.832000e-01

Outputting figure to mutsig2_images.part000000000022/C1QTNF9.3_1014_10000_0.4095_0.4053_0.5832.png
                gene_name: C1QTNF9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 60 percent done.
C19orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
KS ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
C19orf45   10000 perm   2 sec   (6510 perm/sec)   p_kst 5.224000e-01   p_cons 7.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C19orf45.2_1550_10000_0.5224_0.7449_1.png
                gene_name: C19orf45
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
C19orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
C19orf47   10000 perm   1 sec   (7006 perm/sec)   p_kst 9.246000e-01   p_cons 4.017000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C19orf47.2_1096_10000_0.9246_0.4017_1.png
                gene_name: C19orf47
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
C19orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
Cons ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
KS ci ratio: 3.577655e-02	ci left: 5.356788e-01	ci right 5.552947e-01	k: 5455	n:10000
C19orf57   10000 perm   2 sec   (6119 perm/sec)   p_kst 5.455000e-01   p_cons 1.794000e-01   p_joint 2.019000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf57.2_1942_10000_0.5455_0.1794_0.2019.png
                gene_name: C19orf57
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
C1GALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
C1GALT1   10000 perm   2 sec   (6660 perm/sec)   p_kst 9.000000e-03   p_cons 3.421000e-01   p_joint 9.000000e-03

Joint ci ratio: 6.284521e-02	ci left: 1.577078e-01	ci right 1.679905e-01	k: 3256	n:20000
Cons ci ratio: 3.888317e-02	ci left: 3.303486e-01	ci right 3.434988e-01	k: 6738	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
C1GALT1   20000 perm   4 sec   (5696 perm/sec)   p_kst 9.700000e-03   p_cons 3.369000e-01   p_joint 1.628000e-01

Joint ci ratio: 1.290598e-01	ci left: 2.790488e-02	ci right 3.178688e-02	k: 894	n:30000
Cons ci ratio: 3.142971e-02	ci left: 3.360664e-01	ci right 3.468310e-01	k: 10243	n:30000
KS ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
C1GALT1   30000 perm   6 sec   (5341 perm/sec)   p_kst 9.500000e-03   p_cons 3.414333e-01   p_joint 2.980000e-02

Joint ci ratio: 1.105500e-01	ci left: 2.878783e-02	ci right 3.218078e-02	k: 1218	n:40000
Cons ci ratio: 2.718668e-02	ci left: 3.373254e-01	ci right 3.466476e-01	k: 13679	n:40000
KS ci ratio: 1.965093e-01	ci left: 8.881628e-03	ci right 1.084051e-02	k: 393	n:40000
C1GALT1   40000 perm   8 sec   (5153 perm/sec)   p_kst 9.825000e-03   p_cons 3.419750e-01   p_joint 3.045000e-02

Joint ci ratio: 9.843855e-02	ci left: 2.922478e-02	ci right 3.227002e-02	k: 1536	n:50000
Cons ci ratio: 2.423568e-02	ci left: 3.393168e-01	ci right 3.476613e-01	k: 17174	n:50000
KS ci ratio: 1.744273e-01	ci left: 9.127276e-03	ci right 1.089031e-02	k: 499	n:50000
C1GALT1   50000 perm   10 sec   (5002 perm/sec)   p_kst 9.980000e-03   p_cons 3.434800e-01   p_joint 3.072000e-02

Joint ci ratio: 8.969639e-02	ci left: 2.946454e-02	ci right 3.224775e-02	k: 1850	n:60000
Cons ci ratio: 2.213959e-02	ci left: 3.393671e-01	ci right 3.469814e-01	k: 20590	n:60000
KS ci ratio: 1.600401e-01	ci left: 9.107247e-03	ci right 1.070736e-02	k: 593	n:60000
C1GALT1   60000 perm   12 sec   (4874 perm/sec)   p_kst 9.883333e-03   p_cons 3.431667e-01   p_joint 3.083333e-02

Joint ci ratio: 1.491498e-01	ci left: 9.042210e-03	ci right 1.051314e-02	k: 683	n:70000
Cons ci ratio: 2.052969e-02	ci left: 3.389413e-01	ci right 3.459861e-01	k: 23972	n:70000
KS ci ratio: 1.491498e-01	ci left: 9.042210e-03	ci right 1.051314e-02	k: 683	n:70000
C1GALT1   70000 perm   15 sec   (4757 perm/sec)   p_kst 9.757143e-03   p_cons 3.424571e-01   p_joint 9.757143e-03

Joint ci ratio: 1.404926e-01	ci left: 8.960024e-03	ci right 1.032589e-02	k: 770	n:80000
Cons ci ratio: 1.923456e-02	ci left: 3.384504e-01	ci right 3.450361e-01	k: 27339	n:80000
KS ci ratio: 1.404926e-01	ci left: 8.960024e-03	ci right 1.032589e-02	k: 770	n:80000
C1GALT1   80000 perm   17 sec   (4655 perm/sec)   p_kst 9.625000e-03   p_cons 3.417375e-01   p_joint 9.625000e-03

Joint ci ratio: 1.328741e-01	ci left: 8.941012e-03	ci right 1.022423e-02	k: 861	n:90000
Cons ci ratio: 1.816928e-02	ci left: 3.377806e-01	ci right 3.439852e-01	k: 30679	n:90000
KS ci ratio: 1.328741e-01	ci left: 8.941012e-03	ci right 1.022423e-02	k: 861	n:90000
C1GALT1   90000 perm   20 sec   (4544 perm/sec)   p_kst 9.566667e-03   p_cons 3.408778e-01   p_joint 9.566667e-03

Joint ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
Cons ci ratio: 1.721807e-02	ci left: 3.384308e-01	ci right 3.443184e-01	k: 34137	n:100000
KS ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
C1GALT1   100000 perm   22 sec   (4454 perm/sec)   p_kst 9.750000e-03   p_cons 3.413700e-01   p_joint 9.750000e-03

Joint ci ratio: 1.189727e-01	ci left: 9.190976e-03	ci right 1.036236e-02	k: 1074	n:110000
Cons ci ratio: 1.642270e-02	ci left: 3.384070e-01	ci right 3.440196e-01	k: 37533	n:110000
KS ci ratio: 1.189727e-01	ci left: 9.190976e-03	ci right 1.036236e-02	k: 1074	n:110000
C1GALT1   110000 perm   25 sec   (4368 perm/sec)   p_kst 9.763636e-03   p_cons 3.412091e-01   p_joint 9.763636e-03

Joint ci ratio: 1.131178e-01	ci left: 9.347539e-03	ci right 1.047634e-02	k: 1188	n:120000
Cons ci ratio: 1.572592e-02	ci left: 3.384590e-01	ci right 3.438320e-01	k: 40937	n:120000
KS ci ratio: 1.131178e-01	ci left: 9.347539e-03	ci right 1.047634e-02	k: 1188	n:120000
C1GALT1   120000 perm   28 sec   (4272 perm/sec)   p_kst 9.900000e-03   p_cons 3.411417e-01   p_joint 9.900000e-03

Joint ci ratio: 1.085561e-01	ci left: 9.391376e-03	ci right 1.047681e-02	k: 1290	n:130000
Cons ci ratio: 1.510885e-02	ci left: 3.385687e-01	ci right 3.437307e-01	k: 44349	n:130000
KS ci ratio: 1.085561e-01	ci left: 9.391376e-03	ci right 1.047681e-02	k: 1290	n:130000
C1GALT1   130000 perm   31 sec   (4187 perm/sec)   p_kst 9.923077e-03   p_cons 3.411462e-01   p_joint 9.923077e-03

Joint ci ratio: 1.046190e-01	ci left: 9.408861e-03	ci right 1.045444e-02	k: 1389	n:140000
Cons ci ratio: 1.455914e-02	ci left: 3.386663e-01	ci right 3.436403e-01	k: 47761	n:140000
KS ci ratio: 1.046190e-01	ci left: 9.408861e-03	ci right 1.045444e-02	k: 1389	n:140000
C1GALT1   140000 perm   34 sec   (4110 perm/sec)   p_kst 9.921429e-03   p_cons 3.411500e-01   p_joint 9.921429e-03

Joint ci ratio: 1.010471e-01	ci left: 9.431131e-03	ci right 1.044128e-02	k: 1489	n:150000
Cons ci ratio: 1.408773e-02	ci left: 3.380418e-01	ci right 3.428444e-01	k: 51066	n:150000
KS ci ratio: 1.010471e-01	ci left: 9.431131e-03	ci right 1.044128e-02	k: 1489	n:150000
C1GALT1   150000 perm   37 sec   (4037 perm/sec)   p_kst 9.926667e-03   p_cons 3.404400e-01   p_joint 9.926667e-03

Joint ci ratio: 9.787990e-02	ci left: 9.438951e-03	ci right 1.041643e-02	k: 1587	n:160000
Cons ci ratio: 1.364180e-02	ci left: 3.380718e-01	ci right 3.427215e-01	k: 54463	n:160000
KS ci ratio: 9.787990e-02	ci left: 9.438951e-03	ci right 1.041643e-02	k: 1587	n:160000
C1GALT1   160000 perm   40 sec   (3964 perm/sec)   p_kst 9.918750e-03   p_cons 3.403937e-01   p_joint 9.918750e-03

Outputting figure to mutsig2_images.part000000000022/C1GALT1.2_1104_160000_0.0099188_0.34039_0.0099188.png
                gene_name: C1GALT1
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0099 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.0099 
     ci_joint_bounds_left: 0.0094 
    ci_joint_bounds_right: 0.010 

Current progress: 73 percent done.
C1GALT1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
Cons ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
C1GALT1C1   10000 perm   1 sec   (6775 perm/sec)   p_kst 5.090000e-02   p_cons 3.701000e-01   p_joint 2.613000e-01

Joint ci ratio: 3.611912e-02	ci left: 3.639008e-01	ci right 3.773369e-01	k: 7412	n:20000
Cons ci ratio: 3.579235e-02	ci left: 3.681347e-01	ci right 3.816017e-01	k: 7497	n:20000
KS ci ratio: 1.216545e-01	ci left: 4.634031e-02	ci right 5.239157e-02	k: 986	n:20000
C1GALT1C1   20000 perm   3 sec   (5878 perm/sec)   p_kst 4.930000e-02   p_cons 3.748500e-01   p_joint 3.706000e-01

Joint ci ratio: 3.790886e-02	ci left: 2.577595e-01	ci right 2.677531e-01	k: 7882	n:30000
Cons ci ratio: 2.917654e-02	ci left: 3.701488e-01	ci right 3.811419e-01	k: 11269	n:30000
KS ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
C1GALT1C1   30000 perm   5 sec   (5478 perm/sec)   p_kst 4.986667e-02   p_cons 3.756333e-01   p_joint 2.627333e-01

Outputting figure to mutsig2_images.part000000000022/C1GALT1C1.2_961_30000_0.049867_0.37563_0.26273.png
                gene_name: C1GALT1C1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 77 percent done.
C1QB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
Cons ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
C1QB   10000 perm   1 sec   (7354 perm/sec)   p_kst 2.260000e-02   p_cons 9.730000e-01   p_joint 1.176000e-01

Joint ci ratio: 5.073069e-02	ci left: 2.240336e-01	ci right 2.357450e-01	k: 4597	n:20000
Cons ci ratio: 4.643100e-03	ci left: 9.703987e-01	ci right 9.749625e-01	k: 19455	n:20000
KS ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
C1QB   20000 perm   3 sec   (6283 perm/sec)   p_kst 2.170000e-02   p_cons 9.727500e-01   p_joint 2.298500e-01

Joint ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
Cons ci ratio: 3.836208e-03	ci left: 9.701734e-01	ci right 9.739344e-01	k: 29163	n:30000
KS ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
C1QB   30000 perm   5 sec   (5905 perm/sec)   p_kst 2.200000e-02   p_cons 9.721000e-01   p_joint 9.146667e-02

Joint ci ratio: 2.659041e-02	ci left: 3.473430e-01	ci right 3.567285e-01	k: 14081	n:40000
Cons ci ratio: 3.344689e-03	ci left: 9.700535e-01	ci right 9.733276e-01	k: 38869	n:40000
KS ci ratio: 1.288212e-01	ci left: 2.116574e-02	ci right 2.410413e-02	k: 904	n:40000
C1QB   40000 perm   7 sec   (5670 perm/sec)   p_kst 2.260000e-02   p_cons 9.717250e-01   p_joint 3.520250e-01

Joint ci ratio: 3.154206e-02	ci left: 2.322636e-01	ci right 2.397271e-01	k: 11799	n:50000
Cons ci ratio: 2.978538e-03	ci left: 9.704753e-01	ci right 9.733896e-01	k: 48598	n:50000
KS ci ratio: 1.146652e-01	ci left: 2.152885e-02	ci right 2.416695e-02	k: 1141	n:50000
C1QB   50000 perm   9 sec   (5445 perm/sec)   p_kst 2.282000e-02   p_cons 9.719600e-01   p_joint 2.359800e-01

Joint ci ratio: 3.055645e-02	ci left: 2.119503e-01	ci right 2.185439e-01	k: 12914	n:60000
Cons ci ratio: 2.736772e-03	ci left: 9.702395e-01	ci right 9.729146e-01	k: 58296	n:60000
KS ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
C1QB   60000 perm   11 sec   (5287 perm/sec)   p_kst 2.263333e-02   p_cons 9.716000e-01   p_joint 2.152333e-01

Joint ci ratio: 3.379907e-02	ci left: 1.584545e-01	ci right 1.639164e-01	k: 11282	n:70000
Cons ci ratio: 2.517229e-03	ci left: 9.707072e-01	ci right 9.731677e-01	k: 68037	n:70000
KS ci ratio: 9.787926e-02	ci left: 2.130251e-02	ci right 2.350876e-02	k: 1567	n:70000
C1QB   70000 perm   14 sec   (5156 perm/sec)   p_kst 2.238571e-02   p_cons 9.719571e-01   p_joint 1.611714e-01

Outputting figure to mutsig2_images.part000000000022/C1QB.2_770_70000_0.022386_0.97196_0.16117.png
                gene_name: C1QB
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 80 percent done.
C1QTNF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
C1QTNF1   10000 perm   1 sec   (7119 perm/sec)   p_kst 1.038000e-01   p_cons 2.085000e-01   p_joint 4.012000e-01

Joint ci ratio: 3.359394e-02	ci left: 3.981859e-01	ci right 4.118417e-01	k: 8100	n:20000
Cons ci ratio: 5.398102e-02	ci left: 2.029866e-01	ci right 2.142982e-01	k: 4172	n:20000
KS ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
C1QTNF1   20000 perm   3 sec   (6140 perm/sec)   p_kst 1.096500e-01   p_cons 2.086000e-01   p_joint 4.050000e-01

Outputting figure to mutsig2_images.part000000000022/C1QTNF1.2_858_20000_0.10965_0.2086_0.405.png
                gene_name: C1QTNF1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 83 percent done.
C1QTNF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
C1QTNF3   10000 perm   1 sec   (6721 perm/sec)   p_kst 4.108000e-01   p_cons 5.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1QTNF3.2_984_10000_0.4108_0.5493_1.png
                gene_name: C1QTNF3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
C1QTNF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
Cons ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
KS ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
C1QTNF7   10000 perm   1 sec   (6761 perm/sec)   p_kst 5.138000e-01   p_cons 2.297000e-01   p_joint 8.731000e-01

Outputting figure to mutsig2_images.part000000000022/C1QTNF7.2_903_10000_0.5138_0.2297_0.8731.png
                gene_name: C1QTNF7
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 90 percent done.
C1orf156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
Cons ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
KS ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
C1orf156   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.357000e-01   p_cons 6.200000e-03   p_joint 5.000000e-03

Joint ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
Cons ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
KS ci ratio: 6.981906e-02	ci left: 1.313760e-01	ci right 1.409301e-01	k: 2722	n:20000
C1orf156   20000 perm   3 sec   (5730 perm/sec)   p_kst 1.361000e-01   p_cons 6.650000e-03   p_joint 5.900000e-03

Joint ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
Cons ci ratio: 2.873094e-01	ci left: 5.281277e-03	ci right 7.083037e-03	k: 184	n:30000
KS ci ratio: 5.661088e-02	ci left: 1.338851e-01	ci right 1.417185e-01	k: 4133	n:30000
C1orf156   30000 perm   6 sec   (5406 perm/sec)   p_kst 1.377667e-01   p_cons 6.133333e-03   p_joint 1.200000e-02

Joint ci ratio: 1.765454e-01	ci left: 1.109941e-02	ci right 1.327227e-02	k: 486	n:40000
Cons ci ratio: 2.566100e-01	ci left: 5.055994e-03	ci right 6.567108e-03	k: 231	n:40000
KS ci ratio: 4.898023e-02	ci left: 1.346339e-01	ci right 1.414187e-01	k: 5520	n:40000
C1orf156   40000 perm   8 sec   (5209 perm/sec)   p_kst 1.380000e-01   p_cons 5.775000e-03   p_joint 1.215000e-02

Joint ci ratio: 1.535910e-01	ci left: 1.187154e-02	ci right 1.386561e-02	k: 642	n:50000
Cons ci ratio: 2.267827e-01	ci left: 5.266403e-03	ci right 6.631915e-03	k: 296	n:50000
KS ci ratio: 4.376244e-02	ci left: 1.352455e-01	ci right 1.413165e-01	k: 6913	n:50000
C1orf156   50000 perm   10 sec   (5059 perm/sec)   p_kst 1.382600e-01   p_cons 5.920000e-03   p_joint 1.284000e-02

Joint ci ratio: 1.418570e-01	ci left: 1.167456e-02	ci right 1.347305e-02	k: 753	n:60000
Cons ci ratio: 2.034369e-01	ci left: 5.524265e-03	ci right 6.790884e-03	k: 368	n:60000
KS ci ratio: 3.997411e-02	ci left: 1.353652e-01	ci right 1.409032e-01	k: 8287	n:60000
C1orf156   60000 perm   12 sec   (4918 perm/sec)   p_kst 1.381167e-01   p_cons 6.133333e-03   p_joint 1.255000e-02

Joint ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
Cons ci ratio: 1.911588e-01	ci left: 5.400496e-03	ci right 6.555318e-03	k: 417	n:70000
KS ci ratio: 3.703627e-02	ci left: 1.353962e-01	ci right 1.405196e-01	k: 9656	n:70000
C1orf156   70000 perm   15 sec   (4796 perm/sec)   p_kst 1.379429e-01   p_cons 5.957143e-03   p_joint 1.225714e-02

Joint ci ratio: 1.859384e-01	ci left: 5.011179e-03	ci right 6.050175e-03	k: 441	n:80000
Cons ci ratio: 1.778258e-01	ci left: 5.500474e-03	ci right 6.585817e-03	k: 482	n:80000
KS ci ratio: 3.464350e-02	ci left: 1.355673e-01	ci right 1.403590e-01	k: 11036	n:80000
C1orf156   80000 perm   17 sec   (4682 perm/sec)   p_kst 1.379500e-01   p_cons 6.025000e-03   p_joint 5.512500e-03

Joint ci ratio: 1.760627e-01	ci left: 4.995383e-03	ci right 5.970241e-03	k: 492	n:90000
Cons ci ratio: 1.692896e-01	ci left: 5.420723e-03	ci right 6.433743e-03	k: 532	n:90000
KS ci ratio: 3.268150e-02	ci left: 1.355652e-01	ci right 1.400803e-01	k: 12403	n:90000
C1orf156   90000 perm   20 sec   (4578 perm/sec)   p_kst 1.378111e-01   p_cons 5.911111e-03   p_joint 5.466667e-03

Joint ci ratio: 1.671472e-01	ci left: 5.012666e-03	ci right 5.936374e-03	k: 546	n:100000
Cons ci ratio: 1.592849e-01	ci left: 5.540328e-03	ci right 6.508660e-03	k: 601	n:100000
KS ci ratio: 3.094872e-02	ci left: 1.361063e-01	ci right 1.403947e-01	k: 13824	n:100000
C1orf156   100000 perm   22 sec   (4485 perm/sec)   p_kst 1.382400e-01   p_cons 6.010000e-03   p_joint 5.460000e-03

Joint ci ratio: 1.593288e-01	ci left: 5.036556e-03	ci right 5.917099e-03	k: 601	n:110000
Cons ci ratio: 1.514357e-01	ci left: 5.595883e-03	ci right 6.521360e-03	k: 665	n:110000
KS ci ratio: 2.955075e-02	ci left: 1.358674e-01	ci right 1.399517e-01	k: 15169	n:110000
C1orf156   110000 perm   25 sec   (4400 perm/sec)   p_kst 1.379000e-01   p_cons 6.045455e-03   p_joint 5.463636e-03

Joint ci ratio: 1.519337e-01	ci left: 5.097390e-03	ci right 5.943443e-03	k: 661	n:120000
Cons ci ratio: 1.444442e-01	ci left: 5.659221e-03	ci right 6.548235e-03	k: 731	n:120000
KS ci ratio: 2.824232e-02	ci left: 1.363762e-01	ci right 1.402913e-01	k: 16599	n:120000
C1orf156   120000 perm   28 sec   (4311 perm/sec)   p_kst 1.383250e-01   p_cons 6.091667e-03   p_joint 5.508333e-03

Joint ci ratio: 1.452789e-01	ci left: 5.164491e-03	ci right 5.980878e-03	k: 723	n:130000
Cons ci ratio: 1.388657e-01	ci left: 5.669082e-03	ci right 6.522406e-03	k: 791	n:130000
KS ci ratio: 2.712589e-02	ci left: 1.365271e-01	ci right 1.402891e-01	k: 17992	n:130000
C1orf156   130000 perm   31 sec   (4228 perm/sec)   p_kst 1.384000e-01   p_cons 6.084615e-03   p_joint 5.561538e-03

Joint ci ratio: 1.396966e-01	ci left: 5.202014e-03	ci right 5.990104e-03	k: 782	n:140000
Cons ci ratio: 1.331813e-01	ci left: 5.740251e-03	ci right 6.566118e-03	k: 860	n:140000
KS ci ratio: 2.613375e-02	ci left: 1.366448e-01	ci right 1.402702e-01	k: 19383	n:140000
C1orf156   140000 perm   34 sec   (4154 perm/sec)   p_kst 1.384500e-01   p_cons 6.142857e-03   p_joint 5.585714e-03

Joint ci ratio: 1.351160e-01	ci left: 5.202839e-03	ci right 5.963131e-03	k: 836	n:150000
Cons ci ratio: 1.282117e-01	ci left: 5.796092e-03	ci right 6.596509e-03	k: 928	n:150000
KS ci ratio: 2.522053e-02	ci left: 1.369612e-01	ci right 1.404661e-01	k: 20806	n:150000
C1orf156   150000 perm   37 sec   (4079 perm/sec)   p_kst 1.387067e-01   p_cons 6.186667e-03   p_joint 5.573333e-03

Joint ci ratio: 1.306638e-01	ci left: 5.228116e-03	ci right 5.964974e-03	k: 894	n:160000
Cons ci ratio: 1.236351e-01	ci left: 5.857568e-03	ci right 6.635486e-03	k: 998	n:160000
KS ci ratio: 2.440827e-02	ci left: 1.371280e-01	ci right 1.405226e-01	k: 22211	n:160000
C1orf156   160000 perm   40 sec   (4005 perm/sec)   p_kst 1.388187e-01   p_cons 6.237500e-03   p_joint 5.587500e-03

Joint ci ratio: 1.270947e-01	ci left: 5.210905e-03	ci right 5.923763e-03	k: 945	n:170000
Cons ci ratio: 1.199686e-01	ci left: 5.866602e-03	ci right 6.620974e-03	k: 1060	n:170000
KS ci ratio: 2.372344e-02	ci left: 1.367383e-01	ci right 1.400270e-01	k: 23524	n:170000
C1orf156   170000 perm   43 sec   (3933 perm/sec)   p_kst 1.383765e-01   p_cons 6.235294e-03   p_joint 5.558824e-03

Joint ci ratio: 1.235540e-01	ci left: 5.217388e-03	ci right 5.909794e-03	k: 1000	n:180000
Cons ci ratio: 1.171890e-01	ci left: 5.815600e-03	ci right 6.544887e-03	k: 1111	n:180000
KS ci ratio: 2.305441e-02	ci left: 1.367912e-01	ci right 1.399871e-01	k: 24909	n:180000
C1orf156   180000 perm   47 sec   (3868 perm/sec)   p_kst 1.383833e-01   p_cons 6.172222e-03   p_joint 5.555556e-03

Joint ci ratio: 1.194997e-01	ci left: 5.294921e-03	ci right 5.972928e-03	k: 1069	n:190000
Cons ci ratio: 1.137604e-01	ci left: 5.857081e-03	ci right 6.568638e-03	k: 1179	n:190000
KS ci ratio: 2.241967e-02	ci left: 1.370440e-01	ci right 1.401565e-01	k: 26333	n:190000
C1orf156   190000 perm   50 sec   (3804 perm/sec)   p_kst 1.385947e-01   p_cons 6.205263e-03   p_joint 5.626316e-03

Joint ci ratio: 1.159735e-01	ci left: 5.350466e-03	ci right 6.013985e-03	k: 1135	n:200000
Cons ci ratio: 1.098220e-01	ci left: 5.982226e-03	ci right 6.682198e-03	k: 1265	n:200000
KS ci ratio: 2.183965e-02	ci left: 1.372178e-01	ci right 1.402526e-01	k: 27746	n:200000
C1orf156   200000 perm   53 sec   (3745 perm/sec)   p_kst 1.387300e-01   p_cons 6.325000e-03   p_joint 5.675000e-03

Joint ci ratio: 1.126479e-01	ci left: 5.410243e-03	ci right 6.060657e-03	k: 1203	n:210000
Cons ci ratio: 1.068240e-01	ci left: 6.030935e-03	ci right 6.716132e-03	k: 1337	n:210000
KS ci ratio: 2.132324e-02	ci left: 1.371438e-01	ci right 1.401043e-01	k: 29110	n:210000
C1orf156   210000 perm   57 sec   (3684 perm/sec)   p_kst 1.386190e-01   p_cons 6.366667e-03   p_joint 5.728571e-03

Joint ci ratio: 1.104698e-01	ci left: 5.376411e-03	ci right 6.009447e-03	k: 1251	n:220000
Cons ci ratio: 1.046960e-01	ci left: 6.000183e-03	ci right 6.667470e-03	k: 1392	n:220000
KS ci ratio: 2.080735e-02	ci left: 1.374709e-01	ci right 1.403659e-01	k: 30561	n:220000
C1orf156   220000 perm   61 sec   (3626 perm/sec)   p_kst 1.389136e-01   p_cons 6.327273e-03   p_joint 5.686364e-03

Joint ci ratio: 1.079549e-01	ci left: 5.392171e-03	ci right 6.011690e-03	k: 1310	n:230000
Cons ci ratio: 1.021240e-01	ci left: 6.040024e-03	ci right 6.694249e-03	k: 1463	n:230000
KS ci ratio: 2.035228e-02	ci left: 1.374760e-01	ci right 1.403070e-01	k: 31944	n:230000
C1orf156   230000 perm   64 sec   (3569 perm/sec)   p_kst 1.388870e-01   p_cons 6.360870e-03   p_joint 5.695652e-03

Joint ci ratio: 7.186374e-02	ci left: 1.180555e-02	ci right 1.268962e-02	k: 2938	n:240000
Cons ci ratio: 9.956965e-02	ci left: 6.097045e-03	ci right 6.739963e-03	k: 1539	n:240000
KS ci ratio: 1.988115e-02	ci left: 1.380166e-01	ci right 1.407922e-01	k: 33456	n:240000
C1orf156   240000 perm   68 sec   (3516 perm/sec)   p_kst 1.394000e-01   p_cons 6.412500e-03   p_joint 1.224167e-02

Outputting figure to mutsig2_images.part000000000022/C1orf156.2_1123_240000_0.1394_0.0064125_0.012242.png
                gene_name: C1orf156
               theta_stop: 0.100 
                    nperm: 240000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0064 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0067 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 93 percent done.
C1orf161
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
C1orf161   10000 perm   1 sec   (6739 perm/sec)   p_kst 3.390000e-01   p_cons 7.522000e-01   p_joint 6.441000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf161.2_1113_10000_0.339_0.7522_0.6441.png
                gene_name: C1orf161
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 97 percent done.
C1orf163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.265589e-02	ci left: 7.409867e-01	ci right 7.580678e-01	k: 7496	n:10000
KS ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
C1orf163   10000 perm   1 sec   (6874 perm/sec)   p_kst 9.922000e-01   p_cons 7.496000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf163.2_708_10000_0.9922_0.7496_1.png
                gene_name: C1orf163
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000022
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 22 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4421770: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000023> was used as the working directory.
Started at Wed Oct 24 17:33:05 2012
Results reported at Wed Oct 24 17:43:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000023.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000023.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 23  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000023.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    611.00 sec.
    Max Memory :      5319 MB
    Max Swap   :      7680 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
23
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 23
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 23: processing genes 1991 - 2081
Calculating significance of each gene.
Using projection method.
1991	C1orf168	3.558352e-01
1992	C1orf172	6.203644e-01
1993	C1orf173	1
1994	C1orf174	7.731821e-01
1995	C1orf175	9.892955e-01
1996	C1orf177	1.600116e-01
1997	C1orf182	4.133657e-01
1998	C1orf183	1
1999	C1orf186	1.535600e-01
2000/18094 2000	C1orf187	1
2001	C1orf189	2.274889e-01
2002	C1orf190	1
2003	C1orf192	1.064943e-01
2004	C1orf194	1
2005	C1orf198	5.167534e-01
2006	C1orf201	6.248427e-01
2007	C1orf21	4.357447e-01
2008	C1orf210	1
2009	C1orf213	1
2010	C1orf216	1
2011	C1orf226	6.864617e-01
2012	C1orf227	1
2013	C1orf25	5.104847e-01
In gene C1orf26 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 2775    n = 1	mu =   5.69e-07
2014	C1orf26	9.618814e-01
2015	C1orf27	5.983999e-01
2016	C1orf31	2.064865e-01
2017	C1orf35	4.803693e-01
2018	C1orf38	9.575255e-01
2019	C1orf43	1
2020	C1orf49	2.567556e-03
2021	C1orf50	1
2022	C1orf51	4.326673e-01
2023	C1orf52	3.168742e-01
2024	C1orf53	1
2025	C1orf54	1
2026	C1orf55	7.599440e-01
2027	C1orf56	1
2028	C1orf57	7.253726e-01
2029	C1orf58	7.148884e-01
2030	C1orf59	8.001637e-01
2031	C1orf61	1
2032	C1orf63	4.834081e-01
2033	C1orf64	1
2034	C1orf65	1
2035	C1orf66	1
2036	C1orf69	3.748500e-01
2037	C1orf74	3.147538e-01
2038	C1orf77	6.342633e-01
2039	C1orf83	6.939666e-01
2040	C1orf84	1
2041	C1orf85	9.471058e-01
2042	C1orf86	1
2043	C1orf87	9.609984e-01
2044	C1orf88	7.219629e-01
2045	C1orf89	1
2046	C1orf9	1
2047	C1orf91	1
2048	C1orf92	1
2049	C1orf93	1
In gene C1orf94 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 1399    n = 1	mu =   3.68e-07
2050	C1orf94	9.888590e-03
2051	C1orf95	9.292870e-02
2052	C1orf96	7.944922e-01
2053	C2	9.827307e-01
2054	C20orf103	8.059027e-03
2055	C20orf106	6.023701e-01
2056	C20orf107	3.864669e-01
2057	C20orf108	5.830079e-01
2058	C20orf11	1
2059	C20orf111	5.293534e-01
2060	C20orf112	4.988942e-01
2061	C20orf114	8.710881e-01
2062	C20orf117	6.270628e-01
2063	C20orf118	1
2064	C20orf12	9.278130e-01
2065	C20orf132	8.740598e-02
2066	C20orf134	1
2067	C20orf135	3.502400e-01
2068	C20orf141	6.060862e-01
2069	C20orf151	8.324922e-01
2070	C20orf152	1
2071	C20orf160	1
2072	C20orf165	1
2073	C20orf166	3.860577e-01
2074	C20orf177	4.869532e-01
2075	C20orf185	8.655363e-01
2076	C20orf186	4.284700e-01
2077	C20orf194	8.068308e-01
2078	C20orf195	2.553545e-01
2079	C20orf196	2.431794e-01
2080	C20orf197	5.064237e-01
2081	C20orf20	1.818826e-01
Done

Running MutSig 2:
Scatter job 23: processing genes 1991 - 2081
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
Cons ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
KS ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
C1orf173   10000 perm   3 sec   (3524 perm/sec)   p_kst 3.930000e-01   p_cons 4.850000e-02   p_joint 1.531000e-01

Joint ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
Cons ci ratio: 1.217194e-01	ci left: 4.629176e-02	ci right 5.234013e-02	k: 985	n:20000
KS ci ratio: 3.454633e-02	ci left: 3.848265e-01	ci right 3.984051e-01	k: 7832	n:20000
C1orf173   20000 perm   8 sec   (2497 perm/sec)   p_kst 3.916000e-01   p_cons 4.925000e-02   p_joint 9.200000e-02

Joint ci ratio: 6.146209e-02	ci left: 1.157182e-01	ci right 1.230891e-01	k: 3581	n:30000
Cons ci ratio: 1.030266e-01	ci left: 4.365689e-02	ci right 4.843152e-02	k: 1380	n:30000
KS ci ratio: 2.812911e-02	ci left: 3.874006e-01	ci right 3.984868e-01	k: 11788	n:30000
C1orf173   30000 perm   11 sec   (2698 perm/sec)   p_kst 3.929333e-01   p_cons 4.600000e-02   p_joint 1.193667e-01

Joint ci ratio: 4.953327e-02	ci left: 1.320116e-01	ci right 1.387415e-01	k: 5414	n:40000
Cons ci ratio: 8.997783e-02	ci left: 4.325813e-02	ci right 4.735821e-02	k: 1811	n:40000
KS ci ratio: 2.443042e-02	ci left: 3.867872e-01	ci right 3.963785e-01	k: 15663	n:40000
C1orf173   40000 perm   14 sec   (2806 perm/sec)   p_kst 3.915750e-01   p_cons 4.527500e-02   p_joint 1.353500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf173.48_4649_40000_0.39158_0.045275_0.13535.png
                gene_name: C1orf173
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 2 percent done.
C20orf132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
Cons ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
KS ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
C20orf132   10000 perm   2 sec   (4903 perm/sec)   p_kst 5.774000e-01   p_cons 2.630000e-02   p_joint 1.231000e-01

Joint ci ratio: 9.593229e-02	ci left: 7.334198e-02	ci right 8.078153e-02	k: 1540	n:20000
Cons ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
KS ci ratio: 2.431759e-02	ci left: 5.581453e-01	ci right 5.719358e-01	k: 11301	n:20000
C20orf132   20000 perm   4 sec   (4535 perm/sec)   p_kst 5.650500e-01   p_cons 2.850000e-02   p_joint 7.700000e-02

Joint ci ratio: 5.822190e-02	ci left: 1.274316e-01	ci right 1.351066e-01	k: 3937	n:30000
Cons ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
KS ci ratio: 1.995343e-02	ci left: 5.569975e-01	ci right 5.682571e-01	k: 16879	n:30000
C20orf132   30000 perm   7 sec   (4353 perm/sec)   p_kst 5.626333e-01   p_cons 2.823333e-02   p_joint 1.312333e-01

Joint ci ratio: 5.845097e-02	ci left: 9.811292e-02	ci right 1.040451e-01	k: 4042	n:40000
Cons ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
KS ci ratio: 1.731315e-02	ci left: 5.568207e-01	ci right 5.665703e-01	k: 22468	n:40000
C20orf132   40000 perm   9 sec   (4226 perm/sec)   p_kst 5.617000e-01   p_cons 2.817500e-02   p_joint 1.010500e-01

Joint ci ratio: 4.949676e-02	ci left: 1.086944e-01	ci right 1.142308e-01	k: 5572	n:50000
Cons ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
KS ci ratio: 1.547664e-02	ci left: 5.576177e-01	ci right 5.663351e-01	k: 28099	n:50000
C20orf132   50000 perm   12 sec   (4144 perm/sec)   p_kst 5.619800e-01   p_cons 2.800000e-02   p_joint 1.114400e-01

Joint ci ratio: 5.092848e-02	ci left: 8.757337e-02	ci right 9.216639e-02	k: 5391	n:60000
Cons ci ratio: 9.434682e-02	ci left: 2.664565e-02	ci right 2.930027e-02	k: 1677	n:60000
KS ci ratio: 1.432334e-02	ci left: 5.512295e-01	ci right 5.591985e-01	k: 33313	n:60000
C20orf132   60000 perm   15 sec   (4077 perm/sec)   p_kst 5.552167e-01   p_cons 2.795000e-02   p_joint 8.985000e-02

Outputting figure to mutsig2_images.part000000000023/C20orf132.11_3234_60000_0.55522_0.02795_0.08985.png
                gene_name: C20orf132
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.092 

Current progress: 5 percent done.
C1orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
Cons ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
C1orf94   10000 perm   2 sec   (5824 perm/sec)   p_kst 4.140000e-02   p_cons 1.200000e-02   p_joint 4.160000e-02

Joint ci ratio: 2.281111e-01	ci left: 1.288916e-02	ci right 1.625414e-02	k: 290	n:20000
Cons ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
KS ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
C1orf94   20000 perm   4 sec   (5289 perm/sec)   p_kst 4.110000e-02   p_cons 1.435000e-02   p_joint 1.450000e-02

Joint ci ratio: 2.139407e-01	ci left: 9.882165e-03	ci right 1.228060e-02	k: 331	n:30000
Cons ci ratio: 1.883442e-01	ci left: 1.289170e-02	ci right 1.560357e-02	k: 426	n:30000
KS ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
C1orf94   30000 perm   6 sec   (5133 perm/sec)   p_kst 4.110000e-02   p_cons 1.420000e-02   p_joint 1.103333e-02

Joint ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
Cons ci ratio: 1.649332e-01	ci left: 1.277557e-02	ci right 1.509579e-02	k: 556	n:40000
KS ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
C1orf94   40000 perm   8 sec   (4995 perm/sec)   p_kst 3.995000e-02   p_cons 1.390000e-02   p_joint 1.557500e-02

Joint ci ratio: 1.037466e-01	ci left: 2.631798e-02	ci right 2.921719e-02	k: 1387	n:50000
Cons ci ratio: 1.468011e-01	ci left: 1.302701e-02	ci right 1.510997e-02	k: 702	n:50000
KS ci ratio: 8.608407e-02	ci left: 3.810326e-02	ci right 4.155043e-02	k: 1990	n:50000
C1orf94   50000 perm   10 sec   (4874 perm/sec)   p_kst 3.980000e-02   p_cons 1.404000e-02   p_joint 2.774000e-02

Joint ci ratio: 9.906292e-02	ci left: 2.417199e-02	ci right 2.670753e-02	k: 1525	n:60000
Cons ci ratio: 1.327084e-01	ci left: 1.338136e-02	ci right 1.529937e-02	k: 859	n:60000
KS ci ratio: 7.908846e-02	ci left: 3.777558e-02	ci right 4.090252e-02	k: 2359	n:60000
C1orf94   60000 perm   13 sec   (4774 perm/sec)   p_kst 3.931667e-02   p_cons 1.431667e-02   p_joint 2.541667e-02

Joint ci ratio: 1.026700e-01	ci left: 1.935162e-02	ci right 2.145982e-02	k: 1427	n:70000
Cons ci ratio: 1.223293e-01	ci left: 1.357206e-02	ci right 1.535424e-02	k: 1011	n:70000
KS ci ratio: 7.266496e-02	ci left: 3.846204e-02	ci right 4.137626e-02	k: 2793	n:70000
C1orf94   70000 perm   15 sec   (4676 perm/sec)   p_kst 3.990000e-02   p_cons 1.444286e-02   p_joint 2.038571e-02

Joint ci ratio: 9.483011e-02	ci left: 1.991989e-02	ci right 2.191507e-02	k: 1672	n:80000
Cons ci ratio: 1.138592e-01	ci left: 1.376808e-02	ci right 1.544240e-02	k: 1167	n:80000
KS ci ratio: 6.773081e-02	ci left: 3.882470e-02	ci right 4.155877e-02	k: 3214	n:80000
C1orf94   80000 perm   17 sec   (4581 perm/sec)   p_kst 4.017500e-02   p_cons 1.458750e-02   p_joint 2.090000e-02

Joint ci ratio: 9.113095e-02	ci left: 1.922564e-02	ci right 2.107214e-02	k: 1812	n:90000
Cons ci ratio: 1.070175e-01	ci left: 1.390221e-02	ci right 1.548485e-02	k: 1321	n:90000
KS ci ratio: 6.385611e-02	ci left: 3.890409e-02	ci right 4.148120e-02	k: 3616	n:90000
C1orf94   90000 perm   20 sec   (4495 perm/sec)   p_kst 4.017778e-02   p_cons 1.467778e-02   p_joint 2.013333e-02

Joint ci ratio: 9.378600e-02	ci left: 1.636412e-02	ci right 1.798406e-02	k: 1716	n:100000
Cons ci ratio: 1.018743e-01	ci left: 1.384619e-02	ci right 1.534216e-02	k: 1458	n:100000
KS ci ratio: 6.052349e-02	ci left: 3.904017e-02	ci right 4.148658e-02	k: 4025	n:100000
C1orf94   100000 perm   23 sec   (4411 perm/sec)   p_kst 4.025000e-02   p_cons 1.458000e-02   p_joint 1.716000e-02

Joint ci ratio: 1.182527e-01	ci left: 9.305684e-03	ci right 1.048401e-02	k: 1087	n:110000
Cons ci ratio: 1.019783e-01	ci left: 1.257817e-02	ci right 1.393859e-02	k: 1457	n:110000
KS ci ratio: 5.777219e-02	ci left: 3.901094e-02	ci right 4.134066e-02	k: 4418	n:110000
C1orf94   110000 perm   25 sec   (4334 perm/sec)   p_kst 4.016364e-02   p_cons 1.324545e-02   p_joint 9.881818e-03

Joint ci ratio: 9.688483e-02	ci left: 1.280587e-02	ci right 1.411780e-02	k: 1614	n:120000
Cons ci ratio: 9.320912e-02	ci left: 1.384752e-02	ci right 1.520942e-02	k: 1742	n:120000
KS ci ratio: 5.525733e-02	ci left: 3.913670e-02	ci right 4.136893e-02	k: 4829	n:120000
C1orf94   120000 perm   28 sec   (4259 perm/sec)   p_kst 4.024167e-02   p_cons 1.451667e-02   p_joint 1.345000e-02

Outputting figure to mutsig2_images.part000000000023/C1orf94.9_1825_120000_0.040242_0.014517_0.01345.png
                gene_name: C1orf94
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 7 percent done.
C1orf175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
Cons ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
KS ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
C1orf175   10000 perm   2 sec   (5000 perm/sec)   p_kst 1.747000e-01   p_cons 9.850000e-02   p_joint 1.799000e-01

Joint ci ratio: 7.305160e-02	ci left: 1.212336e-01	ci right 1.304754e-01	k: 2516	n:20000
Cons ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
KS ci ratio: 5.998560e-02	ci left: 1.706458e-01	ci right 1.812486e-01	k: 3518	n:20000
C1orf175   20000 perm   4 sec   (4560 perm/sec)   p_kst 1.759000e-01   p_cons 9.110000e-02   p_joint 1.258000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf175.8_4060_20000_0.1759_0.0911_0.1258.png
                gene_name: C1orf175
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 10 percent done.
C1orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
Cons ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
KS ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
C1orf87   10000 perm   2 sec   (5645 perm/sec)   p_kst 4.357000e-01   p_cons 4.679000e-01   p_joint 6.128000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf87.8_1685_10000_0.4357_0.4679_0.6128.png
                gene_name: C1orf87
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 12 percent done.
C20orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
Cons ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
KS ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
C20orf103   10000 perm   2 sec   (6614 perm/sec)   p_kst 8.735000e-01   p_cons 1.362000e-01   p_joint 4.921000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf103.8_867_10000_0.8735_0.1362_0.4921.png
                gene_name: C20orf103
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 14 percent done.
C20orf117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
Cons ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
KS ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
C20orf117   10000 perm   2 sec   (4815 perm/sec)   p_kst 1.526000e-01   p_cons 4.599000e-01   p_joint 2.645000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf117.8_5108_10000_0.1526_0.4599_0.2645.png
                gene_name: C20orf117
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 17 percent done.
C20orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
KS ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
C20orf186   10000 perm   2 sec   (5298 perm/sec)   p_kst 6.613000e-01   p_cons 6.990000e-02   p_joint 2.420000e-01

Joint ci ratio: 5.276098e-02	ci left: 2.105610e-01	ci right 2.220216e-01	k: 4325	n:20000
Cons ci ratio: 9.566350e-02	ci left: 7.373314e-02	ci right 8.119025e-02	k: 1548	n:20000
KS ci ratio: 1.907097e-02	ci left: 6.721775e-01	ci right 6.851705e-01	k: 13574	n:20000
C20orf186   20000 perm   4 sec   (4868 perm/sec)   p_kst 6.787000e-01   p_cons 7.740000e-02   p_joint 2.162500e-01

Outputting figure to mutsig2_images.part000000000023/C20orf186.8_1909_20000_0.6787_0.0774_0.21625.png
                gene_name: C20orf186
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 19 percent done.
C1orf168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
Cons ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
KS ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
C1orf168   10000 perm   2 sec   (5336 perm/sec)   p_kst 1.704000e-01   p_cons 5.936000e-01   p_joint 2.194000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf168.7_2267_10000_0.1704_0.5936_0.2194.png
                gene_name: C1orf168
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
C1orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
Cons ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
KS ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
C1orf49   10000 perm   2 sec   (6346 perm/sec)   p_kst 4.100000e-03   p_cons 2.846000e-01   p_joint 1.290000e-02

Joint ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
Cons ci ratio: 4.602656e-02	ci left: 2.599848e-01	ci right 2.722833e-01	k: 5322	n:20000
KS ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
C1orf49   20000 perm   3 sec   (5780 perm/sec)   p_kst 4.250000e-03   p_cons 2.661000e-01   p_joint 1.975000e-02

Joint ci ratio: 2.056447e-01	ci left: 1.073536e-02	ci right 1.322716e-02	k: 358	n:30000
Cons ci ratio: 3.732417e-02	ci left: 2.637892e-01	ci right 2.738556e-01	k: 8064	n:30000
KS ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
C1orf49   30000 perm   5 sec   (5510 perm/sec)   p_kst 4.433333e-03   p_cons 2.688000e-01   p_joint 1.193333e-02

Joint ci ratio: 1.774699e-01	ci left: 1.097988e-02	ci right 1.314182e-02	k: 481	n:40000
Cons ci ratio: 3.218112e-02	ci left: 2.662008e-01	ci right 2.749326e-01	k: 10822	n:40000
KS ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
C1orf49   40000 perm   7 sec   (5346 perm/sec)   p_kst 4.275000e-03   p_cons 2.705500e-01   p_joint 1.202500e-02

Joint ci ratio: 1.852053e-01	ci left: 8.057227e-03	ci right 9.720544e-03	k: 443	n:50000
Cons ci ratio: 2.891221e-02	ci left: 2.649176e-01	ci right 2.727093e-01	k: 13440	n:50000
KS ci ratio: 2.705821e-01	ci left: 3.614787e-03	ci right 4.763953e-03	k: 208	n:50000
C1orf49   50000 perm   10 sec   (5183 perm/sec)   p_kst 4.160000e-03   p_cons 2.688000e-01   p_joint 8.860000e-03

Joint ci ratio: 2.250004e-01	ci left: 4.467073e-03	ci right 5.614940e-03	k: 301	n:60000
Cons ci ratio: 2.553988e-02	ci left: 2.783188e-01	ci right 2.855356e-01	k: 16915	n:60000
KS ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
C1orf49   60000 perm   12 sec   (5031 perm/sec)   p_kst 4.100000e-03   p_cons 2.819167e-01   p_joint 5.016667e-03

Joint ci ratio: 1.538770e-01	ci left: 8.478507e-03	ci right 9.905480e-03	k: 642	n:70000
Cons ci ratio: 2.363811e-02	ci left: 2.787113e-01	ci right 2.853925e-01	k: 19743	n:70000
KS ci ratio: 2.342144e-01	ci left: 3.519031e-03	ci right 4.465671e-03	k: 278	n:70000
C1orf49   70000 perm   14 sec   (4931 perm/sec)   p_kst 3.971429e-03   p_cons 2.820429e-01   p_joint 9.171429e-03

Joint ci ratio: 1.536054e-01	ci left: 7.454444e-03	ci right 8.706625e-03	k: 645	n:80000
Cons ci ratio: 2.208728e-02	ci left: 2.793694e-01	ci right 2.856213e-01	k: 22599	n:80000
KS ci ratio: 2.176725e-01	ci left: 3.598075e-03	ci right 4.488484e-03	k: 322	n:80000
C1orf49   80000 perm   16 sec   (4856 perm/sec)   p_kst 4.025000e-03   p_cons 2.824875e-01   p_joint 8.062500e-03

Joint ci ratio: 1.516776e-01	ci left: 6.807671e-03	ci right 7.935541e-03	k: 662	n:90000
Cons ci ratio: 2.082580e-02	ci left: 2.795158e-01	ci right 2.854093e-01	k: 25421	n:90000
KS ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
C1orf49   90000 perm   19 sec   (4770 perm/sec)   p_kst 4.022222e-03   p_cons 2.824556e-01   p_joint 7.355556e-03

Joint ci ratio: 1.475358e-01	ci left: 6.492601e-03	ci right 7.536301e-03	k: 700	n:100000
Cons ci ratio: 1.973648e-02	ci left: 2.800898e-01	ci right 2.856828e-01	k: 28288	n:100000
KS ci ratio: 1.953616e-01	ci left: 3.618237e-03	ci right 4.410957e-03	k: 400	n:100000
C1orf49   100000 perm   21 sec   (4686 perm/sec)   p_kst 4.000000e-03   p_cons 2.828800e-01   p_joint 7.000000e-03

Joint ci ratio: 1.495276e-01	ci left: 5.744641e-03	ci right 6.681680e-03	k: 682	n:110000
Cons ci ratio: 1.885132e-02	ci left: 2.795053e-01	ci right 2.848335e-01	k: 31038	n:110000
KS ci ratio: 1.840013e-01	ci left: 3.730963e-03	ci right 4.495547e-03	k: 451	n:110000
C1orf49   110000 perm   24 sec   (4605 perm/sec)   p_kst 4.100000e-03   p_cons 2.821636e-01   p_joint 6.200000e-03

Joint ci ratio: 1.470959e-01	ci left: 5.450413e-03	ci right 6.323726e-03	k: 705	n:120000
Cons ci ratio: 1.804013e-02	ci left: 2.798126e-01	ci right 2.849146e-01	k: 33883	n:120000
KS ci ratio: 1.752938e-01	ci left: 3.786161e-03	ci right 4.521453e-03	k: 497	n:120000
C1orf49   120000 perm   26 sec   (4530 perm/sec)   p_kst 4.141667e-03   p_cons 2.823583e-01   p_joint 5.875000e-03

Joint ci ratio: 1.574377e-01	ci left: 4.372393e-03	ci right 5.126882e-03	k: 616	n:130000
Cons ci ratio: 1.727686e-02	ci left: 2.812121e-01	ci right 2.861206e-01	k: 36876	n:130000
KS ci ratio: 1.684953e-01	ci left: 3.796739e-03	ci right 4.502584e-03	k: 538	n:130000
C1orf49   130000 perm   29 sec   (4454 perm/sec)   p_kst 4.138462e-03   p_cons 2.836615e-01   p_joint 4.738462e-03

Joint ci ratio: 1.577215e-01	ci left: 4.046303e-03	ci right 4.745897e-03	k: 614	n:140000
Cons ci ratio: 1.666207e-02	ci left: 2.809691e-01	ci right 2.856970e-01	k: 39666	n:140000
KS ci ratio: 1.624311e-01	ci left: 3.806277e-03	ci right 4.485941e-03	k: 579	n:140000
C1orf49   140000 perm   32 sec   (4380 perm/sec)   p_kst 4.135714e-03   p_cons 2.833286e-01   p_joint 4.385714e-03

Joint ci ratio: 1.560967e-01	ci left: 3.859783e-03	ci right 4.519608e-03	k: 627	n:150000
Cons ci ratio: 1.607792e-02	ci left: 2.815326e-01	ci right 2.861024e-01	k: 42572	n:150000
KS ci ratio: 1.551077e-01	ci left: 3.911048e-03	ci right 4.575007e-03	k: 635	n:150000
C1orf49   150000 perm   35 sec   (4307 perm/sec)   p_kst 4.233333e-03   p_cons 2.838133e-01   p_joint 4.180000e-03

Joint ci ratio: 1.510118e-01	ci left: 3.876975e-03	ci right 4.516197e-03	k: 670	n:160000
Cons ci ratio: 1.556551e-02	ci left: 2.816541e-01	ci right 2.860788e-01	k: 45418	n:160000
KS ci ratio: 1.498942e-01	ci left: 3.937131e-03	ci right 4.581037e-03	k: 680	n:160000
C1orf49   160000 perm   38 sec   (4234 perm/sec)   p_kst 4.250000e-03   p_cons 2.838625e-01   p_joint 4.187500e-03

Joint ci ratio: 1.167456e-01	ci left: 6.203448e-03	ci right 6.978229e-03	k: 1119	n:170000
Cons ci ratio: 1.509349e-02	ci left: 2.819159e-01	ci right 2.862091e-01	k: 48290	n:170000
KS ci ratio: 1.456781e-01	ci left: 3.932128e-03	ci right 4.555553e-03	k: 720	n:170000
C1orf49   170000 perm   41 sec   (4172 perm/sec)   p_kst 4.235294e-03   p_cons 2.840588e-01   p_joint 6.582353e-03

Joint ci ratio: 1.152243e-01	ci left: 6.020610e-03	ci right 6.762089e-03	k: 1149	n:180000
Cons ci ratio: 1.466836e-02	ci left: 2.819730e-01	ci right 2.861451e-01	k: 51130	n:180000
KS ci ratio: 1.416120e-01	ci left: 3.938625e-03	ci right 4.544179e-03	k: 762	n:180000
C1orf49   180000 perm   44 sec   (4109 perm/sec)   p_kst 4.233333e-03   p_cons 2.840556e-01   p_joint 6.383333e-03

Joint ci ratio: 1.000101e-01	ci left: 7.619722e-03	ci right 8.426976e-03	k: 1523	n:190000
Cons ci ratio: 1.427577e-02	ci left: 2.820676e-01	ci right 2.861285e-01	k: 53978	n:190000
KS ci ratio: 1.374405e-01	ci left: 3.970068e-03	ci right 4.561004e-03	k: 809	n:190000
C1orf49   190000 perm   47 sec   (4047 perm/sec)   p_kst 4.257895e-03   p_cons 2.840947e-01   p_joint 8.015789e-03

Joint ci ratio: 1.040253e-01	ci left: 6.683105e-03	ci right 7.421292e-03	k: 1409	n:200000
Cons ci ratio: 1.391259e-02	ci left: 2.821691e-01	ci right 2.861272e-01	k: 56829	n:200000
KS ci ratio: 1.339314e-01	ci left: 3.979268e-03	ci right 4.555246e-03	k: 852	n:200000
C1orf49   200000 perm   50 sec   (3986 perm/sec)   p_kst 4.260000e-03   p_cons 2.841450e-01   p_joint 7.045000e-03

Joint ci ratio: 1.030903e-01	ci left: 6.485430e-03	ci right 7.194952e-03	k: 1435	n:210000
Cons ci ratio: 1.358740e-02	ci left: 2.819151e-01	ci right 2.857765e-01	k: 59607	n:210000
KS ci ratio: 1.306780e-01	ci left: 3.987765e-03	ci right 4.549864e-03	k: 895	n:210000
C1orf49   210000 perm   53 sec   (3927 perm/sec)   p_kst 4.261905e-03   p_cons 2.838429e-01   p_joint 6.833333e-03

Joint ci ratio: 1.013111e-01	ci left: 6.416519e-03	ci right 7.105664e-03	k: 1486	n:220000
Cons ci ratio: 1.327077e-02	ci left: 2.820891e-01	ci right 2.858621e-01	k: 62474	n:220000
KS ci ratio: 1.282696e-01	ci left: 3.956038e-03	ci right 4.502606e-03	k: 929	n:220000
C1orf49   220000 perm   57 sec   (3869 perm/sec)   p_kst 4.222727e-03   p_cons 2.839727e-01   p_joint 6.754545e-03

Joint ci ratio: 1.000474e-01	ci left: 6.298577e-03	ci right 6.966121e-03	k: 1524	n:230000
Cons ci ratio: 1.297294e-02	ci left: 2.823226e-01	ci right 2.860133e-01	k: 65358	n:230000
KS ci ratio: 1.254031e-01	ci left: 3.965062e-03	ci right 4.499724e-03	k: 972	n:230000
C1orf49   230000 perm   60 sec   (3815 perm/sec)   p_kst 4.226087e-03   p_cons 2.841652e-01   p_joint 6.626087e-03

Joint ci ratio: 9.788839e-02	ci left: 6.312459e-03	ci right 6.966208e-03	k: 1592	n:240000
Cons ci ratio: 1.269481e-02	ci left: 2.825208e-01	ci right 2.861344e-01	k: 68238	n:240000
KS ci ratio: 1.230249e-01	ci left: 3.953264e-03	ci right 4.475488e-03	k: 1010	n:240000
C1orf49   240000 perm   64 sec   (3763 perm/sec)   p_kst 4.208333e-03   p_cons 2.843250e-01   p_joint 6.633333e-03

Joint ci ratio: 8.824121e-02	ci left: 7.486256e-03	ci right 8.181227e-03	k: 1957	n:250000
Cons ci ratio: 1.285942e-02	ci left: 2.692304e-01	ci right 2.727189e-01	k: 67743	n:250000
KS ci ratio: 1.207193e-01	ci left: 3.946376e-03	ci right 4.457223e-03	k: 1049	n:250000
C1orf49   250000 perm   67 sec   (3713 perm/sec)   p_kst 4.196000e-03   p_cons 2.709720e-01   p_joint 7.828000e-03

Joint ci ratio: 8.927088e-02	ci left: 7.032775e-03	ci right 7.693662e-03	k: 1913	n:260000
Cons ci ratio: 1.260697e-02	ci left: 2.693497e-01	ci right 2.727708e-01	k: 70475	n:260000
KS ci ratio: 1.185933e-01	ci left: 3.936371e-03	ci right 4.436320e-03	k: 1087	n:260000
C1orf49   260000 perm   71 sec   (3662 perm/sec)   p_kst 4.180769e-03   p_cons 2.710577e-01   p_joint 7.357692e-03

Joint ci ratio: 9.237118e-02	ci left: 6.319743e-03	ci right 6.935363e-03	k: 1788	n:270000
Cons ci ratio: 1.236350e-02	ci left: 2.696309e-01	ci right 2.729888e-01	k: 73253	n:270000
KS ci ratio: 1.163685e-01	ci left: 3.941564e-03	ci right 4.432136e-03	k: 1129	n:270000
C1orf49   270000 perm   75 sec   (3616 perm/sec)   p_kst 4.181481e-03   p_cons 2.713074e-01   p_joint 6.622222e-03

Joint ci ratio: 9.100990e-02	ci left: 6.282467e-03	ci right 6.884957e-03	k: 1842	n:280000
Cons ci ratio: 1.213897e-02	ci left: 2.697178e-01	ci right 2.730155e-01	k: 75982	n:280000
KS ci ratio: 1.140203e-01	ci left: 3.963817e-03	ci right 4.446534e-03	k: 1176	n:280000
C1orf49   280000 perm   78 sec   (3569 perm/sec)   p_kst 4.200000e-03   p_cons 2.713643e-01   p_joint 6.578571e-03

Joint ci ratio: 9.208220e-02	ci left: 5.924268e-03	ci right 6.499460e-03	k: 1800	n:290000
Cons ci ratio: 1.193072e-02	ci left: 2.696513e-01	ci right 2.728912e-01	k: 78668	n:290000
KS ci ratio: 1.125032e-01	ci left: 3.934349e-03	ci right 4.406679e-03	k: 1208	n:290000
C1orf49   290000 perm   82 sec   (3525 perm/sec)   p_kst 4.165517e-03   p_cons 2.712690e-01   p_joint 6.206897e-03

Joint ci ratio: 9.927820e-02	ci left: 4.913242e-03	ci right 5.429721e-03	k: 1550	n:300000
Cons ci ratio: 1.172413e-02	ci left: 2.698825e-01	ci right 2.730686e-01	k: 81442	n:300000
KS ci ratio: 1.105985e-01	ci left: 3.939298e-03	ci right 4.403694e-03	k: 1250	n:300000
C1orf49   300000 perm   86 sec   (3481 perm/sec)   p_kst 4.166667e-03   p_cons 2.714733e-01   p_joint 5.166667e-03

Joint ci ratio: 9.786966e-02	ci left: 4.896331e-03	ci right 5.403310e-03	k: 1595	n:310000
Cons ci ratio: 1.153346e-02	ci left: 2.699092e-01	ci right 2.730434e-01	k: 84157	n:310000
KS ci ratio: 1.091269e-01	ci left: 3.918886e-03	ci right 4.374332e-03	k: 1284	n:310000
C1orf49   310000 perm   90 sec   (3438 perm/sec)   p_kst 4.141935e-03   p_cons 2.714742e-01   p_joint 5.145161e-03

Joint ci ratio: 9.714619e-02	ci left: 4.816482e-03	ci right 5.311297e-03	k: 1619	n:320000
Cons ci ratio: 1.135198e-02	ci left: 2.699284e-01	ci right 2.730132e-01	k: 86870	n:320000
KS ci ratio: 1.076715e-01	ci left: 3.902828e-03	ci right 4.349975e-03	k: 1319	n:320000
C1orf49   320000 perm   94 sec   (3395 perm/sec)   p_kst 4.121875e-03   p_cons 2.714687e-01   p_joint 5.059375e-03

Joint ci ratio: 9.670479e-02	ci left: 4.714868e-03	ci right 5.196918e-03	k: 1634	n:330000
Cons ci ratio: 1.118335e-02	ci left: 2.697865e-01	ci right 2.728236e-01	k: 89530	n:330000
KS ci ratio: 1.061549e-01	ci left: 3.896632e-03	ci right 4.336388e-03	k: 1357	n:330000
C1orf49   330000 perm   98 sec   (3355 perm/sec)   p_kst 4.112121e-03   p_cons 2.713030e-01   p_joint 4.951515e-03

Joint ci ratio: 9.545861e-02	ci left: 4.699626e-03	ci right 5.173579e-03	k: 1677	n:340000
Cons ci ratio: 1.102381e-02	ci left: 2.695887e-01	ci right 2.725799e-01	k: 92168	n:340000
KS ci ratio: 1.044754e-01	ci left: 3.908030e-03	ci right 4.341666e-03	k: 1401	n:340000
C1orf49   340000 perm   103 sec   (3315 perm/sec)   p_kst 4.120588e-03   p_cons 2.710824e-01   p_joint 4.932353e-03

Joint ci ratio: 9.406734e-02	ci left: 4.704823e-03	ci right 5.172003e-03	k: 1727	n:350000
Cons ci ratio: 1.085945e-02	ci left: 2.698189e-01	ci right 2.727678e-01	k: 94952	n:350000
KS ci ratio: 1.028019e-01	ci left: 3.924395e-03	ci right 4.352450e-03	k: 1447	n:350000
C1orf49   350000 perm   107 sec   (3277 perm/sec)   p_kst 4.134286e-03   p_cons 2.712914e-01   p_joint 4.934286e-03

Joint ci ratio: 9.369320e-02	ci left: 4.612099e-03	ci right 5.068150e-03	k: 1741	n:360000
Cons ci ratio: 1.070831e-02	ci left: 2.698120e-01	ci right 2.727195e-01	k: 97655	n:360000
KS ci ratio: 1.015480e-01	ci left: 3.912827e-03	ci right 4.334105e-03	k: 1483	n:360000
C1orf49   360000 perm   111 sec   (3239 perm/sec)   p_kst 4.119444e-03   p_cons 2.712639e-01   p_joint 4.836111e-03

Joint ci ratio: 9.378053e-02	ci left: 4.479515e-03	ci right 4.922892e-03	k: 1738	n:370000
Cons ci ratio: 1.055934e-02	ci left: 2.699541e-01	ci right 2.728224e-01	k: 100413	n:370000
KS ci ratio: 1.000749e-01	ci left: 3.922997e-03	ci right 4.338882e-03	k: 1527	n:370000
C1orf49   370000 perm   116 sec   (3203 perm/sec)   p_kst 4.127027e-03   p_cons 2.713865e-01   p_joint 4.697297e-03

Joint ci ratio: 9.274729e-02	ci left: 4.461869e-03	ci right 4.898369e-03	k: 1777	n:380000
Cons ci ratio: 1.041974e-02	ci left: 2.699629e-01	ci right 2.727932e-01	k: 103123	n:380000
KS ci ratio: 9.875875e-02	ci left: 3.924972e-03	ci right 4.335277e-03	k: 1568	n:380000
C1orf49   380000 perm   120 sec   (3167 perm/sec)   p_kst 4.126316e-03   p_cons 2.713763e-01   p_joint 4.676316e-03

Outputting figure to mutsig2_images.part000000000023/C1orf49.6_861_380000_0.0041263_0.27138_0.0046763.png
                gene_name: C1orf49
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.0041 
        ci_ks_bounds_left: 0.0039 
       ci_ks_bounds_right: 0.0043 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0049 

Current progress: 24 percent done.
C20orf194
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.757738e-02	ci left: 6.595781e-01	ci right 6.781235e-01	k: 6689	n:10000
Cons ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
KS ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
C20orf194   10000 perm   2 sec   (4995 perm/sec)   p_kst 2.752000e-01   p_cons 6.902000e-01   p_joint 6.689000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf194.6_3682_10000_0.2752_0.6902_0.6689.png
                gene_name: C20orf194
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 26 percent done.
C1orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
Cons ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
KS ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
C1orf26   10000 perm   2 sec   (5329 perm/sec)   p_kst 5.384000e-01   p_cons 2.525000e-01   p_joint 3.996000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf26.5_2775_10000_0.5384_0.2525_0.3996.png
                gene_name: C1orf26
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 29 percent done.
C1orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
Cons ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
KS ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
C1orf9   10000 perm   2 sec   (5589 perm/sec)   p_kst 7.060000e-02   p_cons 6.777000e-01   p_joint 2.000000e-01

Joint ci ratio: 5.528966e-02	ci left: 1.952669e-01	ci right 2.064202e-01	k: 4016	n:20000
Cons ci ratio: 1.879607e-02	ci left: 6.785107e-01	ci right 6.914355e-01	k: 13700	n:20000
KS ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
C1orf9   20000 perm   4 sec   (5052 perm/sec)   p_kst 7.600000e-02   p_cons 6.850000e-01   p_joint 2.008000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf9.5_3861_20000_0.076_0.685_0.2008.png
                gene_name: C1orf9
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 31 percent done.
C20orf185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
Cons ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
KS ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
C20orf185   10000 perm   2 sec   (6033 perm/sec)   p_kst 4.456000e-01   p_cons 1.678000e-01   p_joint 3.461000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf185.5_1491_10000_0.4456_0.1678_0.3461.png
                gene_name: C20orf185
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
C1orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
Cons ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
KS ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
C1orf177   10000 perm   1 sec   (6667 perm/sec)   p_kst 1.128000e-01   p_cons 2.020000e-01   p_joint 1.416000e-01

Joint ci ratio: 6.360495e-02	ci left: 1.544997e-01	ci right 1.646994e-01	k: 3191	n:20000
Cons ci ratio: 5.501559e-02	ci left: 1.968502e-01	ci right 2.080365e-01	k: 4048	n:20000
KS ci ratio: 7.924803e-02	ci left: 1.046639e-01	ci right 1.133501e-01	k: 2179	n:20000
C1orf177   20000 perm   3 sec   (5958 perm/sec)   p_kst 1.089500e-01   p_cons 2.024000e-01   p_joint 1.595500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf177.4_1362_20000_0.10895_0.2024_0.15955.png
                gene_name: C1orf177
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 36 percent done.
C1orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
Cons ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
KS ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
C1orf25   10000 perm   2 sec   (5686 perm/sec)   p_kst 8.880000e-01   p_cons 2.932000e-01   p_joint 6.925000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf25.4_2262_10000_0.888_0.2932_0.6925.png
                gene_name: C1orf25
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 38 percent done.
C1orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
Cons ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
C1orf55   10000 perm   2 sec   (6302 perm/sec)   p_kst 3.689000e-01   p_cons 2.485000e-01   p_joint 2.668000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf55.4_1384_10000_0.3689_0.2485_0.2668.png
                gene_name: C1orf55
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 40 percent done.
C1orf192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
C1orf192   10000 perm   1 sec   (7026 perm/sec)   p_kst 4.969000e-01   p_cons 1.531000e-01   p_joint 5.929000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf192.3_554_10000_0.4969_0.1531_0.5929.png
                gene_name: C1orf192
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 43 percent done.
C1orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
Cons ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
KS ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
C1orf59   10000 perm   2 sec   (6651 perm/sec)   p_kst 7.974000e-01   p_cons 6.528000e-01   p_joint 9.815000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf59.3_1210_10000_0.7974_0.6528_0.9815.png
                gene_name: C1orf59
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 45 percent done.
C1orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
Cons ci ratio: 2.637165e-02	ci left: 6.792186e-01	ci right 6.974716e-01	k: 6884	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
C1orf74   10000 perm   1 sec   (6986 perm/sec)   p_kst 6.923000e-01   p_cons 6.884000e-01   p_joint 8.755000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf74.3_814_10000_0.6923_0.6884_0.8755.png
                gene_name: C1orf74
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 48 percent done.
C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
Cons ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
C2   10000 perm   2 sec   (6321 perm/sec)   p_kst 1.040000e-02   p_cons 7.069000e-01   p_joint 7.610000e-02

Joint ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
Cons ci ratio: 1.784367e-02	ci left: 7.006375e-01	ci right 7.133023e-01	k: 14140	n:20000
KS ci ratio: 2.581180e-01	ci left: 9.928283e-03	ci right 1.291630e-02	k: 227	n:20000
C2   20000 perm   4 sec   (5645 perm/sec)   p_kst 1.135000e-02   p_cons 7.070000e-01   p_joint 6.015000e-02

Joint ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
Cons ci ratio: 1.459052e-02	ci left: 7.012102e-01	ci right 7.115498e-01	k: 21192	n:30000
KS ci ratio: 2.162579e-01	ci left: 9.661284e-03	ci right 1.203487e-02	k: 324	n:30000
C2   30000 perm   6 sec   (5392 perm/sec)   p_kst 1.080000e-02   p_cons 7.064000e-01   p_joint 3.103333e-02

Joint ci ratio: 1.296295e-01	ci left: 2.089945e-02	ci right 2.382047e-02	k: 893	n:40000
Cons ci ratio: 1.219762e-02	ci left: 7.164004e-01	ci right 7.252175e-01	k: 28833	n:40000
KS ci ratio: 1.877974e-01	ci left: 9.762548e-03	ci right 1.180941e-02	k: 430	n:40000
C2   40000 perm   8 sec   (5237 perm/sec)   p_kst 1.075000e-02   p_cons 7.208250e-01   p_joint 2.232500e-02

Joint ci ratio: 9.992388e-02	ci left: 2.836598e-02	ci right 3.136893e-02	k: 1492	n:50000
Cons ci ratio: 1.092630e-02	ci left: 7.162627e-01	ci right 7.241518e-01	k: 36011	n:50000
KS ci ratio: 1.676181e-01	ci left: 9.912512e-03	ci right 1.174495e-02	k: 540	n:50000
C2   50000 perm   10 sec   (5116 perm/sec)   p_kst 1.080000e-02   p_cons 7.202200e-01   p_joint 2.984000e-02

Joint ci ratio: 9.933041e-02	ci left: 2.404189e-02	ci right 2.657098e-02	k: 1517	n:60000
Cons ci ratio: 1.034285e-02	ci left: 7.017007e-01	ci right 7.090127e-01	k: 42322	n:60000
KS ci ratio: 1.517430e-01	ci left: 1.016477e-02	ci right 1.184970e-02	k: 659	n:60000
C2   60000 perm   12 sec   (4985 perm/sec)   p_kst 1.098333e-02   p_cons 7.053667e-01   p_joint 2.528333e-02

Joint ci ratio: 1.025235e-01	ci left: 1.940733e-02	ci right 2.151840e-02	k: 1431	n:70000
Cons ci ratio: 9.563674e-03	ci left: 7.024947e-01	ci right 7.092597e-01	k: 49412	n:70000
KS ci ratio: 1.414183e-01	ci left: 1.008885e-02	ci right 1.163781e-02	k: 759	n:70000
C2   70000 perm   14 sec   (4876 perm/sec)   p_kst 1.084286e-02   p_cons 7.058857e-01   p_joint 2.044286e-02

Joint ci ratio: 8.675115e-02	ci left: 2.380677e-02	ci right 2.597787e-02	k: 1990	n:80000
Cons ci ratio: 8.952970e-03	ci left: 7.023904e-01	ci right 7.087197e-01	k: 56445	n:80000
KS ci ratio: 1.321750e-01	ci left: 1.015575e-02	ci right 1.160505e-02	k: 869	n:80000
C2   80000 perm   17 sec   (4778 perm/sec)   p_kst 1.086250e-02   p_cons 7.055625e-01   p_joint 2.487500e-02

Joint ci ratio: 8.850148e-02	ci left: 2.038836e-02	ci right 2.228712e-02	k: 1919	n:90000
Cons ci ratio: 8.448537e-03	ci left: 7.021979e-01	ci right 7.081667e-01	k: 63467	n:90000
KS ci ratio: 1.238348e-01	ci left: 1.032881e-02	ci right 1.170298e-02	k: 990	n:90000
C2   90000 perm   19 sec   (4694 perm/sec)   p_kst 1.100000e-02   p_cons 7.051889e-01   p_joint 2.132222e-02

Joint ci ratio: 8.496928e-02	ci left: 1.995376e-02	ci right 2.173419e-02	k: 2083	n:100000
Cons ci ratio: 8.009380e-03	ci left: 7.026439e-01	ci right 7.083042e-01	k: 70548	n:100000
KS ci ratio: 1.172172e-01	ci left: 1.041130e-02	ci right 1.171729e-02	k: 1105	n:100000
C2   100000 perm   22 sec   (4614 perm/sec)   p_kst 1.105000e-02   p_cons 7.054800e-01   p_joint 2.083000e-02

Joint ci ratio: 8.036232e-02	ci left: 2.032118e-02	ci right 2.203147e-02	k: 2328	n:110000
Cons ci ratio: 7.638786e-03	ci left: 7.026597e-01	ci right 7.080568e-01	k: 77590	n:110000
KS ci ratio: 1.115123e-01	ci left: 1.048923e-02	ci right 1.173675e-02	k: 1221	n:110000
C2   110000 perm   24 sec   (4545 perm/sec)   p_kst 1.110000e-02   p_cons 7.053636e-01   p_joint 2.116364e-02

Joint ci ratio: 6.338985e-02	ci left: 2.990348e-02	ci right 3.186928e-02	k: 3705	n:120000
Cons ci ratio: 7.068597e-03	ci left: 7.167733e-01	ci right 7.218661e-01	k: 86319	n:120000
KS ci ratio: 1.066070e-01	ci left: 1.054734e-02	ci right 1.174313e-02	k: 1336	n:120000
C2   120000 perm   27 sec   (4470 perm/sec)   p_kst 1.113333e-02   p_cons 7.193250e-01   p_joint 3.087500e-02

Joint ci ratio: 6.687945e-02	ci left: 2.488440e-02	ci right 2.661377e-02	k: 3346	n:130000
Cons ci ratio: 6.777611e-03	ci left: 7.176894e-01	ci right 7.225777e-01	k: 93618	n:130000
KS ci ratio: 1.026909e-01	ci left: 1.051506e-02	ci right 1.166075e-02	k: 1440	n:130000
C2   130000 perm   30 sec   (4397 perm/sec)   p_kst 1.107692e-02   p_cons 7.201385e-01   p_joint 2.573846e-02

Joint ci ratio: 6.868664e-02	ci left: 2.195421e-02	ci right 2.352279e-02	k: 3182	n:140000
Cons ci ratio: 6.529611e-03	ci left: 7.178691e-01	ci right 7.225789e-01	k: 100832	n:140000
KS ci ratio: 9.914448e-02	ci left: 1.049505e-02	ci right 1.159677e-02	k: 1545	n:140000
C2   140000 perm   32 sec   (4329 perm/sec)   p_kst 1.103571e-02   p_cons 7.202286e-01   p_joint 2.272857e-02

Outputting figure to mutsig2_images.part000000000023/C2.3_2408_140000_0.011036_0.72023_0.022729.png
                gene_name: C2
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 50 percent done.
C20orf112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
Cons ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
KS ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
C20orf112   10000 perm   2 sec   (6428 perm/sec)   p_kst 2.726000e-01   p_cons 4.064000e-01   p_joint 3.724000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf112.3_1339_10000_0.2726_0.4064_0.3724.png
                gene_name: C20orf112
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 52 percent done.
C20orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
KS ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
C20orf114   10000 perm   2 sec   (6582 perm/sec)   p_kst 1.671000e-01   p_cons 4.032000e-01   p_joint 3.367000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf114.3_1515_10000_0.1671_0.4032_0.3367.png
                gene_name: C20orf114
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 55 percent done.
C20orf195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
Cons ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
C20orf195   10000 perm   1 sec   (6720 perm/sec)   p_kst 1.101000e-01   p_cons 1.825000e-01   p_joint 1.207000e-01

Joint ci ratio: 4.745907e-02	ci left: 2.482759e-01	ci right 2.603956e-01	k: 5086	n:20000
Cons ci ratio: 6.078369e-02	ci left: 1.668916e-01	ci right 1.774039e-01	k: 3442	n:20000
KS ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
C20orf195   20000 perm   3 sec   (6153 perm/sec)   p_kst 1.105000e-01   p_cons 1.721000e-01   p_joint 2.543000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf195.3_961_20000_0.1105_0.1721_0.2543.png
                gene_name: C20orf195
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 57 percent done.
C1orf172
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
Cons ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
KS ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
C1orf172   10000 perm   1 sec   (7030 perm/sec)   p_kst 5.828000e-01   p_cons 4.370000e-01   p_joint 9.573000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf172.2_1209_10000_0.5828_0.437_0.9573.png
                gene_name: C1orf172
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 60 percent done.
C1orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
Cons ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
KS ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
C1orf186   10000 perm   1 sec   (7049 perm/sec)   p_kst 8.468000e-01   p_cons 2.998000e-01   p_joint 4.671000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf186.2_539_10000_0.8468_0.2998_0.4671.png
                gene_name: C1orf186
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
C1orf198
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
Cons ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
KS ci ratio: 2.120044e-02	ci left: 7.653697e-01	ci right 7.818706e-01	k: 7737	n:10000
C1orf198   10000 perm   1 sec   (6809 perm/sec)   p_kst 7.737000e-01   p_cons 4.890000e-02   p_joint 1.259000e-01

Joint ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
Cons ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
KS ci ratio: 1.502944e-02	ci left: 7.669283e-01	ci right 7.785923e-01	k: 15456	n:20000
C1orf198   20000 perm   3 sec   (6231 perm/sec)   p_kst 7.728000e-01   p_cons 4.980000e-02   p_joint 1.014000e-01

Joint ci ratio: 7.249699e-02	ci left: 8.557163e-02	ci right 9.204160e-02	k: 2663	n:30000
Cons ci ratio: 9.977507e-02	ci left: 4.648675e-02	ci right 5.140108e-02	k: 1467	n:30000
KS ci ratio: 1.232388e-02	ci left: 7.665046e-01	ci right 7.760428e-01	k: 23139	n:30000
C1orf198   30000 perm   5 sec   (5983 perm/sec)   p_kst 7.713000e-01   p_cons 4.890000e-02   p_joint 8.876667e-02

Outputting figure to mutsig2_images.part000000000023/C1orf198.2_1000_30000_0.7713_0.0489_0.088767.png
                gene_name: C1orf198
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 64 percent done.
C1orf201
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
Cons ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
KS ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
C1orf201   10000 perm   1 sec   (7226 perm/sec)   p_kst 3.940000e-02   p_cons 1.490000e-01   p_joint 6.620000e-02

Joint ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
Cons ci ratio: 6.792498e-02	ci left: 1.378798e-01	ci right 1.476244e-01	k: 2854	n:20000
KS ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
C1orf201   20000 perm   3 sec   (6384 perm/sec)   p_kst 3.845000e-02   p_cons 1.427000e-01   p_joint 3.460000e-02

Joint ci ratio: 7.073353e-02	ci left: 8.957236e-02	ci right 9.617340e-02	k: 2785	n:30000
Cons ci ratio: 5.497876e-02	ci left: 1.409017e-01	ci right 1.489005e-01	k: 4346	n:30000
KS ci ratio: 1.123436e-01	ci left: 3.680495e-02	ci right 4.121823e-02	k: 1169	n:30000
C1orf201   30000 perm   5 sec   (6088 perm/sec)   p_kst 3.896667e-02   p_cons 1.448667e-01   p_joint 9.283333e-02

Joint ci ratio: 1.035689e-01	ci left: 3.278154e-02	ci right 3.638643e-02	k: 1382	n:40000
Cons ci ratio: 4.745526e-02	ci left: 1.422559e-01	ci right 1.491956e-01	k: 5828	n:40000
KS ci ratio: 9.706636e-02	ci left: 3.727033e-02	ci right 4.109694e-02	k: 1566	n:40000
C1orf201   40000 perm   7 sec   (5865 perm/sec)   p_kst 3.915000e-02   p_cons 1.457000e-01   p_joint 3.455000e-02

Joint ci ratio: 8.150171e-02	ci left: 4.241491e-02	ci right 4.603825e-02	k: 2210	n:50000
Cons ci ratio: 4.233742e-02	ci left: 1.432526e-01	ci right 1.494686e-01	k: 7317	n:50000
KS ci ratio: 8.763119e-02	ci left: 3.679125e-02	ci right 4.018260e-02	k: 1923	n:50000
C1orf201   50000 perm   9 sec   (5726 perm/sec)   p_kst 3.846000e-02   p_cons 1.463400e-01   p_joint 4.420000e-02

Outputting figure to mutsig2_images.part000000000023/C1orf201.2_892_50000_0.03846_0.14634_0.0442.png
                gene_name: C1orf201
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 67 percent done.
C1orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
C1orf27   10000 perm   1 sec   (6789 perm/sec)   p_kst 3.014000e-01   p_cons 8.400000e-03   p_joint 9.900000e-03

Joint ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
Cons ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
KS ci ratio: 4.247717e-02	ci left: 2.922621e-01	ci right 3.049965e-01	k: 5972	n:20000
C1orf27   20000 perm   3 sec   (6075 perm/sec)   p_kst 2.986000e-01   p_cons 9.350000e-03   p_joint 7.400000e-03

Joint ci ratio: 1.809622e-01	ci left: 1.400516e-02	ci right 1.682316e-02	k: 461	n:30000
Cons ci ratio: 2.383763e-01	ci left: 7.868329e-03	ci right 1.002838e-02	k: 267	n:30000
KS ci ratio: 3.440715e-02	ci left: 2.967741e-01	ci right 3.071976e-01	k: 9059	n:30000
C1orf27   30000 perm   5 sec   (5787 perm/sec)   p_kst 3.019667e-01   p_cons 8.900000e-03   p_joint 1.536667e-02

Joint ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
Cons ci ratio: 2.001318e-01	ci left: 8.548862e-03	ci right 1.047335e-02	k: 379	n:40000
KS ci ratio: 2.963922e-02	ci left: 2.997182e-01	ci right 3.087603e-01	k: 12169	n:40000
C1orf27   40000 perm   7 sec   (5591 perm/sec)   p_kst 3.042250e-01   p_cons 9.475000e-03   p_joint 1.327500e-02

Joint ci ratio: 2.109308e-01	ci left: 6.136311e-03	ci right 7.601822e-03	k: 342	n:50000
Cons ci ratio: 1.795772e-01	ci left: 8.591869e-03	ci right 1.030581e-02	k: 471	n:50000
KS ci ratio: 2.662264e-02	ci left: 2.984156e-01	ci right 3.064874e-01	k: 15122	n:50000
C1orf27   50000 perm   9 sec   (5464 perm/sec)   p_kst 3.024400e-01   p_cons 9.420000e-03   p_joint 6.840000e-03

Joint ci ratio: 2.276676e-01	ci left: 4.356993e-03	ci right 5.491709e-03	k: 294	n:60000
Cons ci ratio: 1.636978e-01	ci left: 8.691314e-03	ci right 1.025668e-02	k: 567	n:60000
KS ci ratio: 2.429785e-02	ci left: 2.988591e-01	ci right 3.062267e-01	k: 18152	n:60000
C1orf27   60000 perm   11 sec   (5349 perm/sec)   p_kst 3.025333e-01   p_cons 9.450000e-03   p_joint 4.900000e-03

Joint ci ratio: 1.775635e-01	ci left: 6.300142e-03	ci right 7.541260e-03	k: 483	n:70000
Cons ci ratio: 1.503757e-01	ci left: 8.890904e-03	ci right 1.035018e-02	k: 672	n:70000
KS ci ratio: 2.250421e-02	ci left: 2.989702e-01	ci right 3.057891e-01	k: 21166	n:70000
C1orf27   70000 perm   13 sec   (5204 perm/sec)   p_kst 3.023714e-01   p_cons 9.600000e-03   p_joint 6.900000e-03

Joint ci ratio: 1.602403e-01	ci left: 6.829781e-03	ci right 8.031356e-03	k: 593	n:80000
Cons ci ratio: 1.350283e-01	ci left: 9.720640e-03	ci right 1.114020e-02	k: 833	n:80000
KS ci ratio: 2.105566e-02	ci left: 2.990936e-01	ci right 3.054707e-01	k: 24182	n:80000
C1orf27   80000 perm   16 sec   (5097 perm/sec)   p_kst 3.022750e-01   p_cons 1.041250e-02   p_joint 7.412500e-03

Joint ci ratio: 1.513330e-01	ci left: 6.839749e-03	ci right 7.970127e-03	k: 665	n:90000
Cons ci ratio: 1.274605e-01	ci left: 9.736715e-03	ci right 1.107290e-02	k: 935	n:90000
KS ci ratio: 1.982999e-02	ci left: 2.997325e-01	ci right 3.057468e-01	k: 27246	n:90000
C1orf27   90000 perm   18 sec   (5006 perm/sec)   p_kst 3.027333e-01   p_cons 1.038889e-02   p_joint 7.388889e-03

Joint ci ratio: 1.452577e-01	ci left: 6.704594e-03	ci right 7.764289e-03	k: 722	n:100000
Cons ci ratio: 1.221118e-01	ci left: 9.576779e-03	ci right 1.083187e-02	k: 1019	n:100000
KS ci ratio: 1.878321e-02	ci left: 3.005414e-01	ci right 3.062500e-01	k: 30339	n:100000
C1orf27   100000 perm   20 sec   (4914 perm/sec)   p_kst 3.033900e-01   p_cons 1.019000e-02   p_joint 7.220000e-03

Joint ci ratio: 1.730066e-01	ci left: 4.243475e-03	ci right 5.055709e-03	k: 510	n:110000
Cons ci ratio: 1.165340e-01	ci left: 9.588130e-03	ci right 1.078336e-02	k: 1119	n:110000
KS ci ratio: 1.791718e-02	ci left: 3.004844e-01	ci right 3.059260e-01	k: 33352	n:110000
C1orf27   110000 perm   23 sec   (4821 perm/sec)   p_kst 3.032000e-01   p_cons 1.017273e-02   p_joint 4.636364e-03

Joint ci ratio: 1.342160e-01	ci left: 6.584391e-03	ci right 7.539665e-03	k: 846	n:120000
Cons ci ratio: 1.113346e-01	ci left: 9.655400e-03	ci right 1.080179e-02	k: 1226	n:120000
KS ci ratio: 1.716018e-02	ci left: 3.004587e-01	ci right 3.056675e-01	k: 36367	n:120000
C1orf27   120000 perm   25 sec   (4737 perm/sec)   p_kst 3.030583e-01   p_cons 1.021667e-02   p_joint 7.050000e-03

Joint ci ratio: 1.296342e-01	ci left: 6.531634e-03	ci right 7.444412e-03	k: 907	n:130000
Cons ci ratio: 1.071401e-01	ci left: 9.645926e-03	ci right 1.074532e-02	k: 1324	n:130000
KS ci ratio: 1.649918e-02	ci left: 3.002492e-01	ci right 3.052519e-01	k: 39357	n:130000
C1orf27   130000 perm   28 sec   (4654 perm/sec)   p_kst 3.027462e-01   p_cons 1.018462e-02   p_joint 6.976923e-03

Joint ci ratio: 1.596895e-01	ci left: 3.943399e-03	ci right 4.634523e-03	k: 599	n:140000
Cons ci ratio: 1.033498e-01	ci left: 9.645461e-03	ci right 1.070355e-02	k: 1423	n:140000
KS ci ratio: 1.589216e-02	ci left: 3.005220e-01	ci right 3.053433e-01	k: 42410	n:140000
C1orf27   140000 perm   31 sec   (4578 perm/sec)   p_kst 3.029286e-01   p_cons 1.016429e-02   p_joint 4.278571e-03

Joint ci ratio: 1.192411e-01	ci left: 6.726600e-03	ci right 7.585949e-03	k: 1072	n:150000
Cons ci ratio: 9.914900e-02	ci left: 9.801709e-03	ci right 1.083069e-02	k: 1546	n:150000
KS ci ratio: 1.534030e-02	ci left: 3.009609e-01	ci right 3.056200e-01	k: 45493	n:150000
C1orf27   150000 perm   33 sec   (4507 perm/sec)   p_kst 3.032867e-01   p_cons 1.030667e-02   p_joint 7.146667e-03

Joint ci ratio: 1.158906e-01	ci left: 6.688351e-03	ci right 7.517161e-03	k: 1135	n:160000
Cons ci ratio: 9.588718e-02	ci left: 9.841552e-03	ci right 1.083881e-02	k: 1653	n:160000
KS ci ratio: 1.483912e-02	ci left: 3.014347e-01	ci right 3.059474e-01	k: 48590	n:160000
C1orf27   160000 perm   36 sec   (4414 perm/sec)   p_kst 3.036875e-01   p_cons 1.033125e-02   p_joint 7.093750e-03

Joint ci ratio: 1.124304e-01	ci left: 6.700643e-03	ci right 7.504540e-03	k: 1206	n:170000
Cons ci ratio: 9.300753e-02	ci left: 9.859957e-03	ci right 1.082744e-02	k: 1757	n:170000
KS ci ratio: 1.439044e-02	ci left: 3.016671e-01	ci right 3.060455e-01	k: 51655	n:170000
C1orf27   170000 perm   39 sec   (4350 perm/sec)   p_kst 3.038529e-01   p_cons 1.033529e-02   p_joint 7.094118e-03

Joint ci ratio: 1.100900e-01	ci left: 6.609217e-03	ci right 7.384567e-03	k: 1258	n:180000
Cons ci ratio: 8.993444e-02	ci left: 9.974482e-03	ci right 1.091916e-02	k: 1879	n:180000
KS ci ratio: 1.399154e-02	ci left: 3.015317e-01	ci right 3.057858e-01	k: 54658	n:180000
C1orf27   180000 perm   42 sec   (4283 perm/sec)   p_kst 3.036556e-01   p_cons 1.043889e-02   p_joint 6.988889e-03

Joint ci ratio: 1.133743e-01	ci left: 5.897997e-03	ci right 6.611931e-03	k: 1187	n:190000
Cons ci ratio: 8.763500e-02	ci left: 9.964136e-03	ci right 1.088247e-02	k: 1979	n:190000
KS ci ratio: 1.361101e-02	ci left: 3.018165e-01	ci right 3.059579e-01	k: 57738	n:190000
C1orf27   190000 perm   45 sec   (4217 perm/sec)   p_kst 3.038842e-01   p_cons 1.041579e-02   p_joint 6.247368e-03

Joint ci ratio: 1.104382e-01	ci left: 5.914143e-03	ci right 6.610284e-03	k: 1251	n:200000
Cons ci ratio: 8.523461e-02	ci left: 1.001873e-02	ci right 1.091555e-02	k: 2092	n:200000
KS ci ratio: 1.327232e-02	ci left: 3.016800e-01	ci right 3.057157e-01	k: 60739	n:200000
C1orf27   200000 perm   48 sec   (4148 perm/sec)   p_kst 3.036950e-01   p_cons 1.046000e-02   p_joint 6.255000e-03

Joint ci ratio: 1.272977e-01	ci left: 4.208991e-03	ci right 4.785770e-03	k: 943	n:210000
Cons ci ratio: 8.296424e-02	ci left: 1.008242e-02	ci right 1.095974e-02	k: 2208	n:210000
KS ci ratio: 1.295727e-02	ci left: 3.015719e-01	ci right 3.055097e-01	k: 63743	n:210000
C1orf27   210000 perm   51 sec   (4085 perm/sec)   p_kst 3.035381e-01   p_cons 1.051429e-02   p_joint 4.490476e-03

Joint ci ratio: 4.376020e-02	ci left: 3.442030e-02	ci right 3.596471e-02	k: 7741	n:220000
Cons ci ratio: 5.987030e-02	ci left: 1.854107e-02	ci right 1.968983e-02	k: 4204	n:220000
KS ci ratio: 1.266160e-02	ci left: 3.015428e-01	ci right 3.053896e-01	k: 66762	n:220000
C1orf27   220000 perm   55 sec   (4022 perm/sec)   p_kst 3.034636e-01   p_cons 1.910909e-02   p_joint 3.518636e-02

Outputting figure to mutsig2_images.part000000000023/C1orf27.2_1417_220000_0.30346_0.019109_0.035186.png
                gene_name: C1orf27
               theta_stop: 0.060 
                    nperm: 220000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 69 percent done.
C1orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
C1orf31   10000 perm   1 sec   (7105 perm/sec)   p_kst 6.406000e-01   p_cons 1.398000e-01   p_joint 4.266000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf31.2_390_10000_0.6406_0.1398_0.4266.png
                gene_name: C1orf31
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 71 percent done.
C1orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
KS ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
C1orf51   10000 perm   1 sec   (6756 perm/sec)   p_kst 9.083000e-01   p_cons 9.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf51.2_1178_10000_0.9083_0.9605_1.png
                gene_name: C1orf51
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
C1orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
Cons ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
KS ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
C1orf52   10000 perm   1 sec   (7172 perm/sec)   p_kst 3.573000e-01   p_cons 6.948000e-01   p_joint 6.514000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf52.2_561_10000_0.3573_0.6948_0.6514.png
                gene_name: C1orf52
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 76 percent done.
C1orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
C1orf63   10000 perm   1 sec   (7097 perm/sec)   p_kst 1.536000e-01   p_cons 3.899000e-01   p_joint 4.401000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf63.2_889_10000_0.1536_0.3899_0.4401.png
                gene_name: C1orf63
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 79 percent done.
C1orf69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
KS ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
C1orf69   10000 perm   1 sec   (7078 perm/sec)   p_kst 2.673000e-01   p_cons 2.167000e-01   p_joint 2.970000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf69.2_1083_10000_0.2673_0.2167_0.297.png
                gene_name: C1orf69
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 81 percent done.
C1orf95
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 1.433436e-02	ci left: 8.756178e-01	ci right 8.883587e-01	k: 8821	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
C1orf95   10000 perm   1 sec   (7229 perm/sec)   p_kst 1.410000e-02   p_cons 8.821000e-01   p_joint 7.270000e-02

Joint ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
Cons ci ratio: 1.013970e-02	ci left: 8.774483e-01	ci right 8.864403e-01	k: 17640	n:20000
KS ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
C1orf95   20000 perm   3 sec   (6509 perm/sec)   p_kst 1.440000e-02   p_cons 8.820000e-01   p_joint 7.135000e-02

Joint ci ratio: 8.223961e-02	ci left: 6.749752e-02	ci right 7.331934e-02	k: 2111	n:30000
Cons ci ratio: 8.400199e-03	ci left: 8.751886e-01	ci right 8.826045e-01	k: 26368	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
C1orf95   30000 perm   5 sec   (6224 perm/sec)   p_kst 1.376667e-02   p_cons 8.789333e-01   p_joint 7.036667e-02

Joint ci ratio: 7.099160e-02	ci left: 6.830516e-02	ci right 7.335736e-02	k: 2832	n:40000
Cons ci ratio: 7.277509e-03	ci left: 8.756123e-01	ci right 8.820326e-01	k: 35154	n:40000
KS ci ratio: 1.667645e-01	ci left: 1.248787e-02	ci right 1.478354e-02	k: 544	n:40000
C1orf95   40000 perm   7 sec   (6006 perm/sec)   p_kst 1.360000e-02   p_cons 8.788500e-01   p_joint 7.080000e-02

Joint ci ratio: 5.483148e-02	ci left: 9.019143e-02	ci right 9.529596e-02	k: 4636	n:50000
Cons ci ratio: 6.542404e-03	ci left: 8.748569e-01	ci right 8.806192e-01	k: 43888	n:50000
KS ci ratio: 1.503096e-01	ci left: 1.241050e-02	ci right 1.444657e-02	k: 670	n:50000
C1orf95   50000 perm   9 sec   (5834 perm/sec)   p_kst 1.340000e-02   p_cons 8.777600e-01   p_joint 9.272000e-02

Joint ci ratio: 5.794626e-02	ci left: 6.880948e-02	ci right 7.293215e-02	k: 4251	n:60000
Cons ci ratio: 5.965650e-03	ci left: 8.753546e-01	ci right 8.806088e-01	k: 52680	n:60000
KS ci ratio: 1.384562e-01	ci left: 1.226986e-02	ci right 1.411101e-02	k: 790	n:60000
C1orf95   60000 perm   11 sec   (5704 perm/sec)   p_kst 1.316667e-02   p_cons 8.780000e-01   p_joint 7.085000e-02

Joint ci ratio: 4.637187e-02	ci left: 9.047655e-02	ci right 9.478585e-02	k: 6483	n:70000
Cons ci ratio: 5.524933e-03	ci left: 8.754806e-01	ci right 8.803451e-01	k: 61455	n:70000
KS ci ratio: 1.288119e-01	ci left: 1.221545e-02	ci right 1.391098e-02	k: 913	n:70000
C1orf95   70000 perm   13 sec   (5578 perm/sec)   p_kst 1.304286e-02   p_cons 8.779286e-01   p_joint 9.261429e-02

Joint ci ratio: 5.010854e-02	ci left: 6.927908e-02	ci right 7.285211e-02	k: 5684	n:80000
Cons ci ratio: 5.162140e-03	ci left: 8.758885e-01	ci right 8.804340e-01	k: 70254	n:80000
KS ci ratio: 1.206431e-01	ci left: 1.223864e-02	ci right 1.382197e-02	k: 1041	n:80000
C1orf95   80000 perm   15 sec   (5459 perm/sec)   p_kst 1.301250e-02   p_cons 8.781750e-01   p_joint 7.105000e-02

Joint ci ratio: 4.726519e-02	ci left: 6.931941e-02	ci right 7.268608e-02	k: 6389	n:90000
Cons ci ratio: 4.868099e-03	ci left: 8.759672e-01	ci right 8.802529e-01	k: 79031	n:90000
KS ci ratio: 1.140520e-01	ci left: 1.221614e-02	ci right 1.370439e-02	k: 1165	n:90000
C1orf95   90000 perm   17 sec   (5340 perm/sec)   p_kst 1.294444e-02   p_cons 8.781222e-01   p_joint 7.098889e-02

Joint ci ratio: 4.477188e-02	ci left: 6.960370e-02	ci right 7.280122e-02	k: 7119	n:100000
Cons ci ratio: 4.616164e-03	ci left: 8.761771e-01	ci right 8.802409e-01	k: 87822	n:100000
KS ci ratio: 1.080538e-01	ci left: 1.228762e-02	ci right 1.370084e-02	k: 1298	n:100000
C1orf95   100000 perm   19 sec   (5225 perm/sec)   p_kst 1.298000e-02   p_cons 8.782200e-01   p_joint 7.119000e-02

Joint ci ratio: 4.266487e-02	ci left: 6.975010e-02	ci right 7.279982e-02	k: 7839	n:110000
Cons ci ratio: 4.392012e-03	ci left: 8.767287e-01	ci right 8.805968e-01	k: 96654	n:110000
KS ci ratio: 1.028395e-01	ci left: 1.236550e-02	ci right 1.371490e-02	k: 1433	n:110000
C1orf95   110000 perm   21 sec   (5127 perm/sec)   p_kst 1.302727e-02   p_cons 8.786727e-01   p_joint 7.126364e-02

Joint ci ratio: 4.075554e-02	ci left: 7.011443e-02	ci right 7.303965e-02	k: 8588	n:120000
Cons ci ratio: 4.199061e-03	ci left: 8.771163e-01	ci right 8.808154e-01	k: 105477	n:120000
KS ci ratio: 9.840927e-02	ci left: 1.240738e-02	ci right 1.369965e-02	k: 1565	n:120000
C1orf95   120000 perm   24 sec   (5009 perm/sec)   p_kst 1.304167e-02   p_cons 8.789750e-01   p_joint 7.156667e-02

Outputting figure to mutsig2_images.part000000000023/C1orf95.2_442_120000_0.013042_0.87897_0.071567.png
                gene_name: C1orf95
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.073 

Current progress: 83 percent done.
C20orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
Cons ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
KS ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
C20orf12   10000 perm   2 sec   (6110 perm/sec)   p_kst 2.258000e-01   p_cons 2.771000e-01   p_joint 4.071000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf12.2_2339_10000_0.2258_0.2771_0.4071.png
                gene_name: C20orf12
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 86 percent done.
C20orf135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
C20orf135   10000 perm   1 sec   (6704 perm/sec)   p_kst 7.170000e-02   p_cons 4.936000e-01   p_joint 2.760000e-01

Joint ci ratio: 4.252284e-02	ci left: 2.918150e-01	ci right 3.045438e-01	k: 5963	n:20000
Cons ci ratio: 2.934978e-02	ci left: 4.644614e-01	ci right 4.783469e-01	k: 9428	n:20000
KS ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
C20orf135   20000 perm   3 sec   (6037 perm/sec)   p_kst 7.150000e-02   p_cons 4.714000e-01   p_joint 2.981500e-01

Outputting figure to mutsig2_images.part000000000023/C20orf135.2_1414_20000_0.0715_0.4714_0.29815.png
                gene_name: C20orf135
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 88 percent done.
C20orf152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
Cons ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
KS ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
C20orf152   10000 perm   2 sec   (6415 perm/sec)   p_kst 3.449000e-01   p_cons 7.744000e-01   p_joint 7.748000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf152.2_1767_10000_0.3449_0.7744_0.7748.png
                gene_name: C20orf152
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 90 percent done.
C20orf160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
KS ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
C20orf160   10000 perm   2 sec   (6551 perm/sec)   p_kst 9.889000e-01   p_cons 9.810000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C20orf160.2_1334_10000_0.9889_0.981_1.png
                gene_name: C20orf160
               theta_stop: 0.0055 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C20orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
C20orf177   10000 perm   1 sec   (6909 perm/sec)   p_kst 8.144000e-01   p_cons 7.227000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C20orf177.2_1156_10000_0.8144_0.7227_1.png
                gene_name: C20orf177
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
C20orf196
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 2.438996e-02	ci left: 7.119950e-01	ci right 7.296762e-01	k: 7209	n:10000
C20orf196   10000 perm   1 sec   (7241 perm/sec)   p_kst 7.209000e-01   p_cons 4.188000e-01   p_joint 6.644000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf196.2_626_10000_0.7209_0.4188_0.6644.png
                gene_name: C20orf196
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 98 percent done.
C20orf20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
KS ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
C20orf20   10000 perm   1 sec   (7332 perm/sec)   p_kst 1.697000e-01   p_cons 6.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C20orf20.2_635_10000_0.1697_0.6961_1.png
                gene_name: C20orf20
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000023
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 23 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4421774: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000024> was used as the working directory.
Started at Wed Oct 24 17:33:17 2012
Results reported at Wed Oct 24 17:39:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000024.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000024.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 24  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000024.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    396.06 sec.
    Max Memory :      5350 MB
    Max Swap   :      7765 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
24
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 24
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 24: processing genes 2082 - 2171
Calculating significance of each gene.
Using projection method.
2082	C20orf24	2.941115e-01
2083	C20orf26	8.628868e-01
2084	C20orf27	7.333997e-01
2085	C20orf29	1
2086	C20orf3	2.472807e-01
2087	C20orf30	2.917173e-01
2088	C20orf4	7.280141e-01
2089	C20orf43	1
2090	C20orf46	1
2091	C20orf54	8.606191e-01
2092	C20orf7	1
2093	C20orf70	3.465458e-01
2094	C20orf71	7.806168e-01
2095	C20orf72	8.752093e-01
2096	C20orf79	4.817231e-01
2097	C20orf85	7.229616e-03
2098	C20orf94	6.902182e-01
2099	C20orf96	6.627634e-01
2100	C21orf2	1
2101	C21orf29	9.625787e-01
2102	C21orf33	7.224299e-01
2103	C21orf45	5.549710e-01
2104	C21orf56	1
2105	C21orf57	1
2106	C21orf58	1
2107	C21orf59	1
2108	C21orf63	1
2109	C21orf7	1
2110	C21orf70	1
2111	C21orf91	3.107808e-01
2112	C22orf13	6.840057e-01
2113	C22orf15	1
2114	C22orf23	1
2115	C22orf24	1
2116	C22orf25	6.924032e-01
2117	C22orf28	3.775828e-01
2118	C22orf29	6.989951e-01
2119	C22orf31	2.655986e-01
2120	C22orf32	1
2121	C22orf33	2.096544e-01
2122	C22orf36	7.247949e-01
2123	C22orf39	1
2124	C22orf40	5.030736e-01
2125	C22orf42	1.962815e-01
2126	C22orf43	3.243814e-01
2127	C22orf9	8.849662e-01
2128	C2CD2	7.860599e-01
2129	C2CD2L	7.745372e-01
2130	C2CD3	9.999502e-01
2131	C2orf15	1
2132	C2orf16	9.999875e-01
2133	C2orf18	3.243499e-01
2134	C2orf24	8.950007e-01
2135	C2orf28	1
2136	C2orf29	6.250897e-01
2137	C2orf3	9.402737e-01
2138	C2orf34	5.916418e-01
2139	C2orf39	5.026080e-02
2140	C2orf40	1
2141	C2orf42	9.476212e-01
2142	C2orf43	1
2143	C2orf44	4.583882e-01
2144	C2orf47	4.917956e-01
2145	C2orf48	6.685334e-02
2146	C2orf49	1
2147	C2orf50	1
2148	C2orf51	1.087538e-03
2149	C2orf53	1.933192e-01
2150	C2orf54	8.829552e-01
2151	C2orf55	9.859269e-01
2152	C2orf56	5.195120e-01
2153	C2orf57	1.901819e-01
2154	C2orf60	1
2155	C2orf61	5.381830e-01
2156	C2orf62	8.986710e-01
2157	C2orf63	7.184607e-01
2158	C2orf64	1
2159	C2orf65	7.422763e-01
2160	C2orf66	9.829837e-02
2161	C2orf67	6.388928e-01
2162	C2orf68	1
2163	C2orf69	1
2164	C2orf7	1
2165	C2orf70	5.150486e-01
2166	C2orf71	7.599900e-01
2167	C2orf73	1
2168	C2orf76	2.612795e-01
2169	C2orf77	1.432276e-01
2170	C2orf78	2.132461e-02
2171	C2orf79	1
Done

Running MutSig 2:
Scatter job 24: processing genes 2082 - 2171
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C2orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
KS ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
C2orf78   10000 perm   2 sec   (5291 perm/sec)   p_kst 3.877000e-01   p_cons 7.479000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf78.12_2781_10000_0.3877_0.7479_0.6564.png
                gene_name: C2orf78
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 3 percent done.
C2orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
KS ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
C2orf39   10000 perm   2 sec   (5079 perm/sec)   p_kst 8.978000e-01   p_cons 8.006000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf39.11_2291_10000_0.8978_0.8006_1.png
                gene_name: C2orf39
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
C20orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
Cons ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
KS ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
C20orf26   10000 perm   2 sec   (5329 perm/sec)   p_kst 6.738000e-01   p_cons 2.177000e-01   p_joint 4.934000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf26.9_3850_10000_0.6738_0.2177_0.4934.png
                gene_name: C20orf26
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 8 percent done.
C2orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
C2orf16   10000 perm   2 sec   (4975 perm/sec)   p_kst 7.795000e-01   p_cons 4.822000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf16.9_5959_10000_0.7795_0.4822_1.png
                gene_name: C2orf16
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
C2orf51
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
KS ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
C2orf51   10000 perm   1 sec   (7094 perm/sec)   p_kst 4.429000e-01   p_cons 2.590000e-02   p_joint 1.533000e-01

Joint ci ratio: 1.093238e-01	ci left: 5.708878e-02	ci right 6.373973e-02	k: 1207	n:20000
Cons ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
KS ci ratio: 3.219540e-02	ci left: 4.187837e-01	ci right 4.325379e-01	k: 8513	n:20000
C2orf51   20000 perm   3 sec   (6213 perm/sec)   p_kst 4.256500e-01   p_cons 2.655000e-02   p_joint 6.035000e-02

Joint ci ratio: 7.177491e-02	ci left: 8.717824e-02	ci right 9.370133e-02	k: 2712	n:30000
Cons ci ratio: 1.374380e-01	ci left: 2.458292e-02	ci right 2.824291e-02	k: 791	n:30000
KS ci ratio: 2.615694e-02	ci left: 4.224914e-01	ci right 4.337225e-01	k: 12843	n:30000
C2orf51   30000 perm   5 sec   (5918 perm/sec)   p_kst 4.281000e-01   p_cons 2.636667e-02   p_joint 9.040000e-02

Joint ci ratio: 6.077745e-02	ci left: 9.132978e-02	ci right 9.707929e-02	k: 3767	n:40000
Cons ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
KS ci ratio: 2.267027e-02	ci left: 4.228694e-01	ci right 4.325911e-01	k: 17109	n:40000
C2orf51   40000 perm   7 sec   (5731 perm/sec)   p_kst 4.277250e-01   p_cons 3.030000e-02   p_joint 9.417500e-02

Joint ci ratio: 5.779269e-02	ci left: 8.181967e-02	ci right 8.670873e-02	k: 4212	n:50000
Cons ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
KS ci ratio: 2.020292e-02	ci left: 4.251753e-01	ci right 4.338728e-01	k: 21476	n:50000
C2orf51   50000 perm   9 sec   (5576 perm/sec)   p_kst 4.295200e-01   p_cons 3.092000e-02   p_joint 8.424000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf51.8_555_50000_0.42952_0.03092_0.08424.png
                gene_name: C2orf51
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 13 percent done.
C2orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
Cons ci ratio: 2.009549e-02	ci left: 7.838091e-01	ci right 7.998206e-01	k: 7919	n:10000
KS ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
C2orf71   10000 perm   2 sec   (5133 perm/sec)   p_kst 4.536000e-01   p_cons 7.919000e-01   p_joint 7.499000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf71.8_3875_10000_0.4536_0.7919_0.7499.png
                gene_name: C2orf71
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 15 percent done.
C2CD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
Cons ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
KS ci ratio: 2.494822e-02	ci left: 7.027112e-01	ci right 7.205654e-01	k: 7117	n:10000
C2CD3   10000 perm   2 sec   (4554 perm/sec)   p_kst 7.117000e-01   p_cons 2.714000e-01   p_joint 6.038000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD3.6_6016_10000_0.7117_0.2714_0.6038.png
                gene_name: C2CD3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 18 percent done.
C2orf44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
Cons ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
KS ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
C2orf44   10000 perm   2 sec   (5836 perm/sec)   p_kst 3.225000e-01   p_cons 5.989000e-01   p_joint 4.653000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf44.6_2178_10000_0.3225_0.5989_0.4653.png
                gene_name: C2orf44
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 21 percent done.
C22orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
Cons ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
KS ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
C22orf28   10000 perm   2 sec   (6056 perm/sec)   p_kst 3.025000e-01   p_cons 4.265000e-01   p_joint 3.782000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf28.5_1566_10000_0.3025_0.4265_0.3782.png
                gene_name: C22orf28
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 23 percent done.
C2orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
Cons ci ratio: 4.676357e-02	ci left: 4.029277e-01	ci right 4.223232e-01	k: 4126	n:10000
KS ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
C2orf53   10000 perm   2 sec   (6635 perm/sec)   p_kst 3.751000e-01   p_cons 4.126000e-01   p_joint 4.601000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf53.5_1243_10000_0.3751_0.4126_0.4601.png
                gene_name: C2orf53
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 26 percent done.
C2orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
Cons ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
KS ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
C2orf56   10000 perm   2 sec   (6169 perm/sec)   p_kst 9.160000e-02   p_cons 1.287000e-01   p_joint 1.858000e-01

Joint ci ratio: 8.638237e-02	ci left: 8.930339e-02	ci right 9.741528e-02	k: 1866	n:20000
Cons ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
KS ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
C2orf56   20000 perm   4 sec   (5548 perm/sec)   p_kst 9.025000e-02   p_cons 1.295500e-01   p_joint 9.330000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf56.5_1366_20000_0.09025_0.12955_0.0933.png
                gene_name: C2orf56
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 28 percent done.
C2orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
C2orf67   10000 perm   2 sec   (5846 perm/sec)   p_kst 6.936000e-01   p_cons 8.300000e-01   p_joint 7.921000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf67.5_3020_10000_0.6936_0.83_0.7921.png
                gene_name: C2orf67
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 31 percent done.
C2orf77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
C2orf77   10000 perm   2 sec   (6516 perm/sec)   p_kst 3.971000e-01   p_cons 7.795000e-01   p_joint 5.385000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf77.5_1695_10000_0.3971_0.7795_0.5385.png
                gene_name: C2orf77
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 33 percent done.
C20orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.167205e-02	ci left: 7.574741e-01	ci right 7.741708e-01	k: 7659	n:10000
Cons ci ratio: 3.984213e-02	ci left: 4.819551e-01	ci right 5.016497e-01	k: 4918	n:10000
KS ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
C20orf3   10000 perm   1 sec   (7121 perm/sec)   p_kst 7.201000e-01   p_cons 4.918000e-01   p_joint 7.659000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf3.4_1287_10000_0.7201_0.4918_0.7659.png
                gene_name: C20orf3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 36 percent done.
C20orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
Cons ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
KS ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
C20orf54   10000 perm   2 sec   (6544 perm/sec)   p_kst 4.746000e-01   p_cons 9.621000e-01   p_joint 6.642000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf54.4_1426_10000_0.4746_0.9621_0.6642.png
                gene_name: C20orf54
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 38 percent done.
C20orf85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
KS ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
C20orf85   10000 perm   1 sec   (6941 perm/sec)   p_kst 1.117000e-01   p_cons 7.554000e-01   p_joint 2.050000e-01

Joint ci ratio: 4.348182e-02	ci left: 2.826244e-01	ci right 2.952370e-01	k: 5778	n:20000
Cons ci ratio: 1.619948e-02	ci left: 7.393021e-01	ci right 7.514265e-01	k: 14908	n:20000
KS ci ratio: 7.804776e-02	ci left: 1.076118e-01	ci right 1.164013e-01	k: 2239	n:20000
C20orf85   20000 perm   3 sec   (6161 perm/sec)   p_kst 1.119500e-01   p_cons 7.454000e-01   p_joint 2.889000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf85.4_430_20000_0.11195_0.7454_0.2889.png
                gene_name: C20orf85
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 41 percent done.
C2orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.819582e-02	ci left: 5.030509e-01	ci right 5.227416e-01	k: 5129	n:10000
Cons ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
C2orf18   10000 perm   1 sec   (6969 perm/sec)   p_kst 2.724000e-01   p_cons 8.046000e-01   p_joint 5.129000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf18.4_1140_10000_0.2724_0.8046_0.5129.png
                gene_name: C2orf18
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 44 percent done.
C2orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
Cons ci ratio: 3.290422e-03	ci left: 9.912756e-01	ci right 9.946275e-01	k: 9931	n:10000
KS ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
C2orf48   10000 perm   1 sec   (7489 perm/sec)   p_kst 2.453000e-01   p_cons 9.931000e-01   p_joint 4.427000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf48.4_492_10000_0.2453_0.9931_0.4427.png
                gene_name: C2orf48
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 46 percent done.
C2orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
Cons ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
KS ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
C2orf57   10000 perm   1 sec   (7118 perm/sec)   p_kst 1.934000e-01   p_cons 6.501000e-01   p_joint 4.500000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf57.4_1192_10000_0.1934_0.6501_0.45.png
                gene_name: C2orf57
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 49 percent done.
C20orf96
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
Cons ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
KS ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
C20orf96   10000 perm   1 sec   (7313 perm/sec)   p_kst 1.495000e-01   p_cons 7.404000e-01   p_joint 6.948000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf96.2_1136_10000_0.1495_0.7404_0.6948.png
                gene_name: C20orf96
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 51 percent done.
C21orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
Cons ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
KS ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
C21orf29   10000 perm   2 sec   (6562 perm/sec)   p_kst 4.244000e-01   p_cons 9.909000e-01   p_joint 6.244000e-01

Outputting figure to mutsig2_images.part000000000024/C21orf29.3_2058_10000_0.4244_0.9909_0.6244.png
                gene_name: C21orf29
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 54 percent done.
C22orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
Cons ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
KS ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
C22orf31   10000 perm   1 sec   (7458 perm/sec)   p_kst 4.506000e-01   p_cons 9.238000e-01   p_joint 6.042000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf31.3_885_10000_0.4506_0.9238_0.6042.png
                gene_name: C22orf31
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 56 percent done.
C22orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
C22orf42   10000 perm   1 sec   (7483 perm/sec)   p_kst 3.714000e-01   p_cons 9.788000e-01   p_joint 4.132000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf42.3_792_10000_0.3714_0.9788_0.4132.png
                gene_name: C22orf42
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 59 percent done.
C2CD2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
Cons ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KS ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
C2CD2L   10000 perm   1 sec   (6758 perm/sec)   p_kst 6.627000e-01   p_cons 3.823000e-01   p_joint 8.782000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD2L.3_2180_10000_0.6627_0.3823_0.8782.png
                gene_name: C2CD2L
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 62 percent done.
C2orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
KS ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
C2orf29   10000 perm   1 sec   (7097 perm/sec)   p_kst 2.280000e-02   p_cons 8.660000e-02   p_joint 3.860000e-02

Joint ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
Cons ci ratio: 9.013292e-02	ci left: 8.249260e-02	ci right 9.032813e-02	k: 1727	n:20000
KS ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
C2orf29   20000 perm   3 sec   (6225 perm/sec)   p_kst 2.280000e-02   p_cons 8.635000e-02   p_joint 2.550000e-02

Joint ci ratio: 1.427074e-01	ci left: 2.278012e-02	ci right 2.631278e-02	k: 735	n:30000
Cons ci ratio: 7.414297e-02	ci left: 8.206446e-02	ci right 8.841614e-02	k: 2556	n:30000
KS ci ratio: 1.505461e-01	ci left: 2.043410e-02	ci right 2.379267e-02	k: 662	n:30000
C2orf29   30000 perm   5 sec   (5935 perm/sec)   p_kst 2.206667e-02   p_cons 8.520000e-02   p_joint 2.450000e-02

Joint ci ratio: 1.235457e-01	ci left: 2.303133e-02	ci right 2.608822e-02	k: 981	n:40000
Cons ci ratio: 6.422364e-02	ci left: 8.245714e-02	ci right 8.795325e-02	k: 3407	n:40000
KS ci ratio: 1.306041e-01	ci left: 2.058481e-02	ci right 2.348516e-02	k: 880	n:40000
C2orf29   40000 perm   7 sec   (5719 perm/sec)   p_kst 2.200000e-02   p_cons 8.517500e-02   p_joint 2.452500e-02

Joint ci ratio: 1.105722e-01	ci left: 2.316260e-02	ci right 2.589299e-02	k: 1225	n:50000
Cons ci ratio: 5.749514e-02	ci left: 8.260916e-02	ci right 8.751914e-02	k: 4252	n:50000
KS ci ratio: 1.171019e-01	ci left: 2.063496e-02	ci right 2.322096e-02	k: 1095	n:50000
C2orf29   50000 perm   9 sec   (5556 perm/sec)   p_kst 2.190000e-02   p_cons 8.504000e-02   p_joint 2.450000e-02

Joint ci ratio: 1.012989e-01	ci left: 2.311516e-02	ci right 2.559781e-02	k: 1460	n:60000
Cons ci ratio: 5.256794e-02	ci left: 8.258269e-02	ci right 8.705756e-02	k: 5088	n:60000
KS ci ratio: 1.070740e-01	ci left: 2.067884e-02	ci right 2.303440e-02	k: 1310	n:60000
C2orf29   60000 perm   11 sec   (5416 perm/sec)   p_kst 2.183333e-02   p_cons 8.480000e-02   p_joint 2.433333e-02

Joint ci ratio: 9.371421e-02	ci left: 2.324173e-02	ci right 2.554078e-02	k: 1706	n:70000
Cons ci ratio: 4.854427e-02	ci left: 8.314193e-02	ci right 8.729253e-02	k: 5964	n:70000
KS ci ratio: 9.898261e-02	ci left: 2.082850e-02	ci right 2.301138e-02	k: 1533	n:70000
C2orf29   70000 perm   13 sec   (5280 perm/sec)   p_kst 2.190000e-02   p_cons 8.520000e-02   p_joint 2.437143e-02

Outputting figure to mutsig2_images.part000000000024/C2orf29.3_1561_70000_0.0219_0.0852_0.024371.png
                gene_name: C2orf29
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.026 

Current progress: 64 percent done.
C2orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264552e-02	ci left: 8.999060e-01	ci right 9.114564e-01	k: 9058	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
C2orf3   10000 perm   1 sec   (6674 perm/sec)   p_kst 3.335000e-01   p_cons 4.564000e-01   p_joint 9.058000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf3.3_2414_10000_0.3335_0.4564_0.9058.png
                gene_name: C2orf3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 67 percent done.
C2orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
KS ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
C2orf55   10000 perm   2 sec   (6404 perm/sec)   p_kst 4.638000e-01   p_cons 2.950000e-02   p_joint 7.700000e-02

Joint ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
Cons ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
KS ci ratio: 2.955669e-02	ci left: 4.609649e-01	ci right 4.748445e-01	k: 9358	n:20000
C2orf55   20000 perm   4 sec   (5676 perm/sec)   p_kst 4.679000e-01   p_cons 2.960000e-02   p_joint 5.715000e-02

Joint ci ratio: 7.285774e-02	ci left: 8.478483e-02	ci right 9.122855e-02	k: 2639	n:30000
Cons ci ratio: 1.274540e-01	ci left: 2.861535e-02	ci right 3.254292e-02	k: 916	n:30000
KS ci ratio: 2.410292e-02	ci left: 4.628732e-01	ci right 4.741995e-01	k: 14056	n:30000
C2orf55   30000 perm   6 sec   (5354 perm/sec)   p_kst 4.685333e-01   p_cons 3.053333e-02   p_joint 8.796667e-02

Joint ci ratio: 5.691287e-02	ci left: 1.029994e-01	ci right 1.090579e-01	k: 4240	n:40000
Cons ci ratio: 1.103633e-01	ci left: 2.888515e-02	ci right 3.228345e-02	k: 1222	n:40000
KS ci ratio: 2.085866e-02	ci left: 4.639995e-01	ci right 4.738050e-01	k: 18756	n:40000
C2orf55   40000 perm   8 sec   (5196 perm/sec)   p_kst 4.689000e-01   p_cons 3.055000e-02   p_joint 1.060000e-01

Joint ci ratio: 5.348791e-02	ci left: 9.439955e-02	ci right 9.960734e-02	k: 4849	n:50000
Cons ci ratio: 9.867060e-02	ci left: 2.908813e-02	ci right 3.212669e-02	k: 1529	n:50000
KS ci ratio: 1.864398e-02	ci left: 4.648576e-01	ci right 4.736260e-01	k: 23462	n:50000
C2orf55   50000 perm   10 sec   (5083 perm/sec)   p_kst 4.692400e-01   p_cons 3.058000e-02   p_joint 9.698000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf55.3_2925_50000_0.46924_0.03058_0.09698.png
                gene_name: C2orf55
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.100 

Current progress: 69 percent done.
C20orf4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 72 percent done.
C20orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
C20orf70   10000 perm   1 sec   (8077 perm/sec)   p_kst 2.580000e-01   p_cons 3.061000e-01   p_joint 2.929000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf70.2_778_10000_0.258_0.3061_0.2929.png
                gene_name: C20orf70
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 74 percent done.
C20orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
Cons ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
KS ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
C20orf94   10000 perm   1 sec   (7478 perm/sec)   p_kst 7.000000e-02   p_cons 9.613000e-01   p_joint 4.292000e-01

Joint ci ratio: 1.461591e-02	ci left: 7.766662e-01	ci right 7.881516e-01	k: 15649	n:20000
Cons ci ratio: 5.601838e-03	ci left: 9.580175e-01	ci right 9.634475e-01	k: 19216	n:20000
KS ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
C20orf94   20000 perm   3 sec   (6562 perm/sec)   p_kst 7.020000e-02   p_cons 9.608000e-01   p_joint 7.824500e-01

Joint ci ratio: 6.474796e-03	ci left: 9.213167e-01	ci right 9.273342e-01	k: 27731	n:30000
Cons ci ratio: 4.595261e-03	ci left: 9.581657e-01	ci right 9.626112e-01	k: 28813	n:30000
KS ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
C20orf94   30000 perm   5 sec   (6181 perm/sec)   p_kst 7.063333e-02   p_cons 9.604333e-01   p_joint 9.243667e-01

Outputting figure to mutsig2_images.part000000000024/C20orf94.2_1253_30000_0.070633_0.96043_0.92437.png
                gene_name: C20orf94
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 77 percent done.
C21orf91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
Cons ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
KS ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
C21orf91   10000 perm   1 sec   (7503 perm/sec)   p_kst 7.240000e-02   p_cons 1.475000e-01   p_joint 1.031000e-01

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 6.599531e-02	ci left: 1.449788e-01	ci right 1.549232e-01	k: 2998	n:20000
KS ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
C21orf91   20000 perm   3 sec   (6575 perm/sec)   p_kst 7.160000e-02   p_cons 1.499000e-01   p_joint 7.885000e-02

Outputting figure to mutsig2_images.part000000000024/C21orf91.2_910_20000_0.0716_0.1499_0.07885.png
                gene_name: C21orf91
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.083 

Current progress: 79 percent done.
C22orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
Cons ci ratio: 2.574045e-02	ci left: 6.896003e-01	ci right 7.076838e-01	k: 6987	n:10000
KS ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
C22orf33   10000 perm   1 sec   (7587 perm/sec)   p_kst 1.354000e-01   p_cons 6.987000e-01   p_joint 4.161000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf33.2_863_10000_0.1354_0.6987_0.4161.png
                gene_name: C22orf33
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
C22orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
C22orf43   10000 perm   1 sec   (7700 perm/sec)   p_kst 1.755000e-01   p_cons 4.320000e-02   p_joint 3.010000e-02

Joint ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
Cons ci ratio: 1.033518e-01	ci left: 6.362186e-02	ci right 7.060464e-02	k: 1341	n:20000
KS ci ratio: 5.912097e-02	ci left: 1.748456e-01	ci right 1.855476e-01	k: 3603	n:20000
C22orf43   20000 perm   3 sec   (6778 perm/sec)   p_kst 1.801500e-01   p_cons 6.705000e-02   p_joint 2.625000e-02

Joint ci ratio: 1.367304e-01	ci left: 2.484066e-02	ci right 2.851844e-02	k: 799	n:30000
Cons ci ratio: 8.420777e-02	ci left: 6.452293e-02	ci right 7.022787e-02	k: 2020	n:30000
KS ci ratio: 4.788912e-02	ci left: 1.781764e-01	ci right 1.869518e-01	k: 5476	n:30000
C22orf43   30000 perm   5 sec   (6415 perm/sec)   p_kst 1.825333e-01   p_cons 6.733333e-02   p_joint 2.663333e-02

Joint ci ratio: 1.209204e-01	ci left: 2.404998e-02	ci right 2.716941e-02	k: 1023	n:40000
Cons ci ratio: 7.286353e-02	ci left: 6.501117e-02	ci right 6.995184e-02	k: 2698	n:40000
KS ci ratio: 4.158363e-02	ci left: 1.779815e-01	ci right 1.855647e-01	k: 7270	n:40000
C22orf43   40000 perm   6 sec   (6158 perm/sec)   p_kst 1.817500e-01   p_cons 6.745000e-02   p_joint 2.557500e-02

Joint ci ratio: 1.147166e-01	ci left: 2.150942e-02	ci right 2.414639e-02	k: 1140	n:50000
Cons ci ratio: 6.468684e-02	ci left: 6.620249e-02	ci right 7.064778e-02	k: 3420	n:50000
KS ci ratio: 3.723802e-02	ci left: 1.780309e-01	ci right 1.848061e-01	k: 9070	n:50000
C22orf43   50000 perm   8 sec   (5979 perm/sec)   p_kst 1.814000e-01   p_cons 6.840000e-02   p_joint 2.280000e-02

Joint ci ratio: 1.044177e-01	ci left: 2.175036e-02	ci right 2.416275e-02	k: 1376	n:60000
Cons ci ratio: 5.926183e-02	ci left: 6.594894e-02	ci right 6.999297e-02	k: 4077	n:60000
KS ci ratio: 3.413575e-02	ci left: 1.770987e-01	ci right 1.832656e-01	k: 10810	n:60000
C22orf43   60000 perm   10 sec   (5831 perm/sec)   p_kst 1.801667e-01   p_cons 6.795000e-02   p_joint 2.293333e-02

Joint ci ratio: 9.628938e-02	ci left: 2.201377e-02	ci right 2.425457e-02	k: 1618	n:70000
Cons ci ratio: 5.471588e-02	ci left: 6.644204e-02	ci right 7.019383e-02	k: 4781	n:70000
KS ci ratio: 3.161709e-02	ci left: 1.772027e-01	ci right 1.829096e-01	k: 12603	n:70000
C22orf43   70000 perm   12 sec   (5686 perm/sec)   p_kst 1.800429e-01   p_cons 6.830000e-02   p_joint 2.311429e-02

Outputting figure to mutsig2_images.part000000000024/C22orf43.2_738_70000_0.18004_0.0683_0.023114.png
                gene_name: C22orf43
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 85 percent done.
C2CD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
C2CD2   10000 perm   1 sec   (6958 perm/sec)   p_kst 3.947000e-01   p_cons 2.629000e-01   p_joint 4.369000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD2.2_2147_10000_0.3947_0.2629_0.4369.png
                gene_name: C2CD2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 87 percent done.
C2orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
C2orf47   10000 perm   1 sec   (7897 perm/sec)   p_kst 2.309000e-01   p_cons 1.540000e-02   p_joint 4.790000e-02

Joint ci ratio: 1.005299e-01	ci left: 6.708754e-02	ci right 7.423789e-02	k: 1412	n:20000
Cons ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
KS ci ratio: 5.068060e-02	ci left: 2.243804e-01	ci right 2.360981e-01	k: 4604	n:20000
C2orf47   20000 perm   3 sec   (6869 perm/sec)   p_kst 2.302000e-01   p_cons 1.530000e-02   p_joint 7.060000e-02

Joint ci ratio: 5.693073e-02	ci left: 1.325679e-01	ci right 1.403694e-01	k: 4093	n:30000
Cons ci ratio: 1.734854e-01	ci left: 1.528021e-02	ci right 1.821445e-02	k: 501	n:30000
KS ci ratio: 4.097052e-02	ci left: 2.289868e-01	ci right 2.385981e-01	k: 7013	n:30000
C2orf47   30000 perm   5 sec   (6488 perm/sec)   p_kst 2.337667e-01   p_cons 1.670000e-02   p_joint 1.364333e-01

Joint ci ratio: 5.742154e-02	ci left: 1.013457e-01	ci right 1.073619e-01	k: 4173	n:40000
Cons ci ratio: 1.506252e-01	ci left: 1.539466e-02	ci right 1.792621e-02	k: 665	n:40000
KS ci ratio: 3.555849e-02	ci left: 2.288642e-01	ci right 2.371746e-01	k: 9320	n:40000
C2orf47   40000 perm   6 sec   (6263 perm/sec)   p_kst 2.330000e-01   p_cons 1.662500e-02   p_joint 1.043250e-01

Joint ci ratio: 5.143933e-02	ci left: 1.013769e-01	ci right 1.067492e-01	k: 5202	n:50000
Cons ci ratio: 1.355958e-01	ci left: 1.532422e-02	ci right 1.757243e-02	k: 821	n:50000
KS ci ratio: 3.187273e-02	ci left: 2.285444e-01	ci right 2.359667e-01	k: 11612	n:50000
C2orf47   50000 perm   8 sec   (6075 perm/sec)   p_kst 2.322400e-01   p_cons 1.642000e-02   p_joint 1.040400e-01

Joint ci ratio: 4.768363e-02	ci left: 9.881428e-02	ci right 1.036577e-01	k: 6073	n:60000
Cons ci ratio: 1.246453e-01	ci left: 1.520497e-02	ci right 1.724221e-02	k: 972	n:60000
KS ci ratio: 2.911285e-02	ci left: 2.286603e-01	ci right 2.354323e-01	k: 13922	n:60000
C2orf47   60000 perm   10 sec   (5915 perm/sec)   p_kst 2.320333e-01   p_cons 1.620000e-02   p_joint 1.012167e-01

Joint ci ratio: 6.130476e-02	ci left: 5.349140e-02	ci right 5.688844e-02	k: 3862	n:70000
Cons ci ratio: 1.143374e-01	ci left: 1.556925e-02	ci right 1.747113e-02	k: 1155	n:70000
KS ci ratio: 2.700252e-02	ci left: 2.282657e-01	ci right 2.345280e-01	k: 16197	n:70000
C2orf47   70000 perm   12 sec   (5779 perm/sec)   p_kst 2.313857e-01   p_cons 1.650000e-02   p_joint 5.517143e-02

Joint ci ratio: 6.296290e-02	ci left: 4.475560e-02	ci right 4.767742e-02	k: 3696	n:80000
Cons ci ratio: 1.070825e-01	ci left: 1.559207e-02	ci right 1.736825e-02	k: 1317	n:80000
KS ci ratio: 2.535122e-02	ci left: 2.271745e-01	ci right 2.330201e-01	k: 18407	n:80000
C2orf47   80000 perm   14 sec   (5658 perm/sec)   p_kst 2.300875e-01   p_cons 1.646250e-02   p_joint 4.620000e-02

Joint ci ratio: 7.850634e-02	ci left: 2.589629e-02	ci right 2.802323e-02	k: 2425	n:90000
Cons ci ratio: 1.019682e-01	ci left: 1.533112e-02	ci right 1.698916e-02	k: 1453	n:90000
KS ci ratio: 2.387217e-02	ci left: 2.277738e-01	ci right 2.332880e-01	k: 20747	n:90000
C2orf47   90000 perm   16 sec   (5536 perm/sec)   p_kst 2.305222e-01   p_cons 1.614444e-02   p_joint 2.694444e-02

Joint ci ratio: 8.117191e-02	ci left: 2.186412e-02	ci right 2.372370e-02	k: 2278	n:100000
Cons ci ratio: 9.755372e-02	ci left: 1.511425e-02	ci right 1.667401e-02	k: 1588	n:100000
KS ci ratio: 2.269661e-02	ci left: 2.271456e-01	ci right 2.323701e-01	k: 22975	n:100000
C2orf47   100000 perm   18 sec   (5426 perm/sec)   p_kst 2.297500e-01   p_cons 1.588000e-02   p_joint 2.278000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf47.2_896_100000_0.22975_0.01588_0.02278.png
                gene_name: C2orf47
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 90 percent done.
C2orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.448086e-02	ci left: 7.104810e-01	ci right 7.281911e-01	k: 7194	n:10000
Cons ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
KS ci ratio: 1.577910e-02	ci left: 8.536564e-01	ci right 8.673329e-01	k: 8606	n:10000
C2orf62   10000 perm   1 sec   (7479 perm/sec)   p_kst 8.606000e-01   p_cons 4.147000e-01   p_joint 7.194000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf62.2_1204_10000_0.8606_0.4147_0.7194.png
                gene_name: C2orf62
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 92 percent done.
C2orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
C2orf63   10000 perm   1 sec   (7178 perm/sec)   p_kst 2.639000e-01   p_cons 1.898000e-01   p_joint 2.475000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf63.2_1805_10000_0.2639_0.1898_0.2475.png
                gene_name: C2orf63
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 95 percent done.
C2orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
C2orf65   10000 perm   1 sec   (7218 perm/sec)   p_kst 8.900000e-01   p_cons 1.610000e-02   p_joint 3.730000e-02

Joint ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
Cons ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
KS ci ratio: 9.738533e-03	ci left: 8.857344e-01	ci right 8.944518e-01	k: 17803	n:20000
C2orf65   20000 perm   3 sec   (6323 perm/sec)   p_kst 8.901500e-01   p_cons 1.615000e-02   p_joint 2.830000e-02

Joint ci ratio: 1.321349e-01	ci left: 2.661392e-02	ci right 3.041145e-02	k: 854	n:30000
Cons ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
KS ci ratio: 7.928776e-03	ci left: 8.871147e-01	ci right 8.942094e-01	k: 26721	n:30000
C2orf65   30000 perm   5 sec   (5983 perm/sec)   p_kst 8.907000e-01   p_cons 1.686667e-02   p_joint 2.846667e-02

Joint ci ratio: 8.326475e-02	ci left: 5.030986e-02	ci right 5.470539e-02	k: 2099	n:40000
Cons ci ratio: 1.496006e-01	ci left: 1.561134e-02	ci right 1.815949e-02	k: 674	n:40000
KS ci ratio: 6.892793e-03	ci left: 8.868423e-01	ci right 8.930010e-01	k: 35598	n:40000
C2orf65   40000 perm   7 sec   (5791 perm/sec)   p_kst 8.899500e-01   p_cons 1.685000e-02   p_joint 5.247500e-02

Joint ci ratio: 7.798665e-02	ci left: 4.622109e-02	ci right 4.999160e-02	k: 2404	n:50000
Cons ci ratio: 1.341919e-01	ci left: 1.565292e-02	ci right 1.792368e-02	k: 838	n:50000
KS ci ratio: 6.179177e-03	ci left: 8.867194e-01	ci right 8.922353e-01	k: 44475	n:50000
C2orf65   50000 perm   9 sec   (5637 perm/sec)   p_kst 8.895000e-01   p_cons 1.676000e-02   p_joint 4.808000e-02

Joint ci ratio: 7.095969e-02	ci left: 4.667995e-02	ci right 5.013056e-02	k: 2903	n:60000
Cons ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
KS ci ratio: 5.679880e-03	ci left: 8.855841e-01	ci right 8.906449e-01	k: 53288	n:60000
C2orf65   60000 perm   11 sec   (5507 perm/sec)   p_kst 8.881333e-01   p_cons 1.698333e-02   p_joint 4.838333e-02

Joint ci ratio: 6.571637e-02	ci left: 4.677959e-02	ci right 4.997226e-02	k: 3385	n:70000
Cons ci ratio: 1.136891e-01	ci left: 1.574975e-02	ci right 1.766204e-02	k: 1168	n:70000
KS ci ratio: 5.259776e-03	ci left: 8.857270e-01	ci right 8.904122e-01	k: 62166	n:70000
C2orf65   70000 perm   13 sec   (5383 perm/sec)   p_kst 8.880857e-01   p_cons 1.668571e-02   p_joint 4.835714e-02

Joint ci ratio: 6.123726e-02	ci left: 4.723094e-02	ci right 5.022689e-02	k: 3897	n:80000
Cons ci ratio: 1.072481e-01	ci left: 1.554339e-02	ci right 1.731693e-02	k: 1313	n:80000
KS ci ratio: 4.924335e-03	ci left: 8.857061e-01	ci right 8.900907e-01	k: 71033	n:80000
C2orf65   80000 perm   15 sec   (5265 perm/sec)   p_kst 8.879125e-01   p_cons 1.641250e-02   p_joint 4.871250e-02

Joint ci ratio: 5.802253e-02	ci left: 4.686447e-02	ci right 4.967585e-02	k: 4343	n:90000
Cons ci ratio: 1.007084e-01	ci left: 1.572114e-02	ci right 1.739911e-02	k: 1489	n:90000
KS ci ratio: 4.652048e-03	ci left: 8.854288e-01	ci right 8.895684e-01	k: 79876	n:90000
C2orf65   90000 perm   17 sec   (5167 perm/sec)   p_kst 8.875111e-01   p_cons 1.654444e-02   p_joint 4.825556e-02

Joint ci ratio: 5.510904e-02	ci left: 4.683124e-02	ci right 4.949504e-02	k: 4815	n:100000
Cons ci ratio: 9.588121e-02	ci left: 1.565115e-02	ci right 1.723707e-02	k: 1643	n:100000
KS ci ratio: 4.414880e-03	ci left: 8.854649e-01	ci right 8.893926e-01	k: 88744	n:100000
C2orf65   100000 perm   20 sec   (5063 perm/sec)   p_kst 8.874400e-01   p_cons 1.643000e-02   p_joint 4.815000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf65.2_1633_100000_0.88744_0.01643_0.04815.png
                gene_name: C2orf65
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.049 

Current progress: 97 percent done.
C2orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
Cons ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
KS ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
C2orf66   10000 perm   1 sec   (8520 perm/sec)   p_kst 1.126000e-01   p_cons 8.478000e-01   p_joint 5.712000e-01

Joint ci ratio: 5.694438e-02	ci left: 1.860669e-01	ci right 1.970230e-01	k: 3830	n:20000
Cons ci ratio: 1.199887e-02	ci left: 8.370730e-01	ci right 8.472274e-01	k: 16844	n:20000
KS ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
C2orf66   20000 perm   3 sec   (7396 perm/sec)   p_kst 1.150500e-01   p_cons 8.422000e-01   p_joint 1.915000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf66.2_362_20000_0.11505_0.8422_0.1915.png
                gene_name: C2orf66
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000024
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 24 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4421780: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000025> was used as the working directory.
Started at Wed Oct 24 17:33:50 2012
Results reported at Wed Oct 24 17:48:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000025.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000025.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 25  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000025.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    603.12 sec.
    Max Memory :      5424 MB
    Max Swap   :      7816 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
25
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 25
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 25: processing genes 2172 - 2262
Calculating significance of each gene.
Using projection method.
2172	C2orf80	3.869058e-01
2173	C2orf83	1
2174	C2orf84	1
2175	C2orf85	2.178990e-02
2176	C2orf86	3.189393e-01
2177	C2orf88	1
2178	C2orf89	1
In gene C3 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 5093    n = 1	mu =   6.02e-07
2179	C3	8.479729e-01
2180	C3AR1	6.625031e-01
2181	C3orf1	6.653221e-02
2182	C3orf10	1
2183	C3orf14	2.067346e-01
2184	C3orf15	5.381816e-01
2185	C3orf17	7.444779e-01
2186	C3orf18	1
2187	C3orf19	8.225257e-01
2188	C3orf20	8.051598e-01
2189	C3orf21	4.952238e-01
2190	C3orf22	4.354322e-01
2191	C3orf23	9.282821e-01
2192	C3orf24	5.171327e-01
2193	C3orf26	1
2194	C3orf27	1.159991e-01
2195	C3orf30	1
2196	C3orf31	7.478618e-01
2197	C3orf32	3.815612e-01
2198	C3orf33	1
2199	C3orf34	1
2200	C3orf35	3.228908e-01
2201	C3orf36	4.281557e-01
2202	C3orf37	1
2203	C3orf38	5.248713e-01
2204	C3orf39	7.979540e-01
2205	C3orf43	6.508523e-01
2206	C3orf45	1
2207	C3orf52	1
2208	C3orf54	1
2209	C3orf55	2.529066e-01
2210	C3orf57	1
2211	C3orf58	6.606293e-01
2212	C3orf59	1
2213	C3orf62	6.908988e-01
2214	C3orf63	9.955967e-01
2215	C3orf64	9.184963e-01
2216	C3orf67	7.814219e-01
2217	C3orf70	7.110381e-01
2218	C3orf71	1
2219	C3orf72	1
2220	C3orf75	1.994830e-01
2221	C3orf79	7.660249e-02
2222	C4BPA	5.693472e-02
2223	C4BPB	1
2224	C4orf14	1
2225	C4orf17	1
2226	C4orf19	1
2227	C4orf21	3.661234e-01
2228	C4orf22	2.077801e-01
2229	C4orf23	5.656307e-01
2230	C4orf26	1
2231	C4orf27	4.274679e-01
2232	C4orf29	6.375423e-01
2233	C4orf3	3.310740e-01
2234	C4orf31	8.966654e-01
2235	C4orf32	1
2236	C4orf33	2.817979e-01
2237	C4orf34	3.570056e-01
2238	C4orf35	6.044560e-03
2239	C4orf36	1
2240	C4orf37	7.738627e-01
2241	C4orf39	8.629464e-02
2242	C4orf40	3.538906e-03
2243	C4orf41	9.576967e-01
2244	C4orf43	6.103612e-01
2245	C4orf44	2.184410e-01
2246	C4orf45	2.502915e-01
2247	C4orf46	2.079200e-01
2248	C4orf49	8.214172e-01
2249	C4orf50	7.000594e-01
2250	C4orf51	1.671836e-01
2251	C4orf6	1.137406e-01
2252	C4orf7	4.351978e-01
2253	C5	9.962219e-01
2254	C5AR1	5.439326e-01
2255	C5orf13	1
2256	C5orf15	1
2257	C5orf20	1
2258	C5orf22	3.569141e-01
2259	C5orf23	1
2260	C5orf24	5.309318e-01
2261	C5orf25	5.822333e-01
2262	C5orf28	3.044826e-01
Done

Running MutSig 2:
Scatter job 25: processing genes 2172 - 2262
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C4orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
Cons ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
KS ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
C4orf21   10000 perm   6 sec   (1783 perm/sec)   p_kst 3.006000e-01   p_cons 8.319000e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf21.14_6423_10000_0.3006_0.8319_0.5065.png
                gene_name: C4orf21
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 2 percent done.
C2orf85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
C2orf85   10000 perm   2 sec   (5235 perm/sec)   p_kst 2.048000e-01   p_cons 7.500000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000025/C2orf85.10_1727_10000_0.2048_0.75_0.37.png
                gene_name: C2orf85
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 4 percent done.
C5orf25
Processing conservation and coverage...
Processing mutations... 
Skipping 5 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
Cons ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
KS ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
C5orf25   10000 perm   2 sec   (5813 perm/sec)   p_kst 2.713000e-01   p_cons 8.914000e-01   p_joint 4.584000e-01

Outputting figure to mutsig2_images.part000000000025/C5orf25.4_1410_10000_0.2713_0.8914_0.4584.png
                gene_name: C5orf25
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 7 percent done.
C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
Cons ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
C3   10000 perm   3 sec   (3156 perm/sec)   p_kst 8.800000e-03   p_cons 6.363000e-01   p_joint 3.470000e-02

Joint ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
Cons ci ratio: 2.142163e-02	ci left: 6.193014e-01	ci right 6.327620e-01	k: 12521	n:20000
KS ci ratio: 2.967330e-01	ci left: 7.367140e-03	ci right 9.978720e-03	k: 172	n:20000
C3   20000 perm   9 sec   (2332 perm/sec)   p_kst 8.600000e-03   p_cons 6.260500e-01   p_joint 4.020000e-02

Joint ci ratio: 1.315815e-01	ci left: 2.683976e-02	ci right 3.065223e-02	k: 861	n:30000
Cons ci ratio: 1.747043e-02	ci left: 6.210977e-01	ci right 6.320777e-01	k: 18798	n:30000
KS ci ratio: 2.483906e-01	ci left: 7.210699e-03	ci right 9.286228e-03	k: 246	n:30000
C3   30000 perm   15 sec   (2008 perm/sec)   p_kst 8.200000e-03   p_cons 6.266000e-01   p_joint 2.870000e-02

Joint ci ratio: 1.290402e-01	ci left: 2.109311e-02	ci right 2.402677e-02	k: 901	n:40000
Cons ci ratio: 1.537830e-02	ci left: 6.141698e-01	ci right 6.237130e-01	k: 24758	n:40000
KS ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
C3   40000 perm   21 sec   (1925 perm/sec)   p_kst 8.600000e-03   p_cons 6.189500e-01   p_joint 2.252500e-02

Joint ci ratio: 1.120808e-01	ci left: 2.254001e-02	ci right 2.523566e-02	k: 1193	n:50000
Cons ci ratio: 1.370095e-02	ci left: 6.165303e-01	ci right 6.250557e-01	k: 31040	n:50000
KS ci ratio: 1.843692e-01	ci left: 8.133555e-03	ci right 9.804203e-03	k: 447	n:50000
C3   50000 perm   28 sec   (1760 perm/sec)   p_kst 8.940000e-03   p_cons 6.208000e-01   p_joint 2.386000e-02

Joint ci ratio: 9.655981e-02	ci left: 2.544099e-02	ci right 2.803840e-02	k: 1603	n:60000
Cons ci ratio: 1.270106e-02	ci left: 6.096233e-01	ci right 6.174324e-01	k: 36812	n:60000
KS ci ratio: 1.671486e-01	ci left: 8.323718e-03	ci right 9.857664e-03	k: 544	n:60000
C3   60000 perm   37 sec   (1634 perm/sec)   p_kst 9.066667e-03   p_cons 6.135333e-01   p_joint 2.671667e-02

Joint ci ratio: 7.993497e-02	ci left: 3.188503e-02	ci right 3.455384e-02	k: 2324	n:70000
Cons ci ratio: 1.174099e-02	ci left: 6.106393e-01	ci right 6.178655e-01	k: 42998	n:70000
KS ci ratio: 1.549754e-01	ci left: 8.354864e-03	ci right 9.771995e-03	k: 633	n:70000
C3   70000 perm   43 sec   (1644 perm/sec)   p_kst 9.042857e-03   p_cons 6.142571e-01   p_joint 3.320000e-02

Joint ci ratio: 7.512613e-02	ci left: 3.167466e-02	ci right 3.415936e-02	k: 2632	n:80000
Cons ci ratio: 1.100084e-02	ci left: 6.100903e-01	ci right 6.168514e-01	k: 49078	n:80000
KS ci ratio: 1.479385e-01	ci left: 8.056050e-03	ci right 9.354955e-03	k: 695	n:80000
C3   80000 perm   49 sec   (1645 perm/sec)   p_kst 8.687500e-03   p_cons 6.134750e-01   p_joint 3.290000e-02

Joint ci ratio: 7.074479e-02	ci left: 3.182060e-02	ci right 3.416518e-02	k: 2968	n:90000
Cons ci ratio: 1.037019e-02	ci left: 6.103540e-01	ci right 6.167276e-01	k: 55219	n:90000
KS ci ratio: 1.405686e-01	ci left: 7.964174e-03	ci right 9.178930e-03	k: 770	n:90000
C3   90000 perm   55 sec   (1640 perm/sec)   p_kst 8.555556e-03   p_cons 6.135444e-01   p_joint 3.297778e-02

Joint ci ratio: 7.003110e-02	ci left: 2.931505e-02	ci right 3.145230e-02	k: 3037	n:100000
Cons ci ratio: 9.852033e-03	ci left: 6.098428e-01	ci right 6.158907e-01	k: 61287	n:100000
KS ci ratio: 1.334075e-01	ci left: 7.988644e-03	ci right 9.140133e-03	k: 855	n:100000
C3   100000 perm   61 sec   (1639 perm/sec)   p_kst 8.550000e-03   p_cons 6.128700e-01   p_joint 3.037000e-02

Joint ci ratio: 7.541541e-02	ci left: 2.306788e-02	ci right 2.488461e-02	k: 2636	n:110000
Cons ci ratio: 9.075342e-03	ci left: 6.262284e-01	ci right 6.319466e-01	k: 69200	n:110000
KS ci ratio: 1.273766e-01	ci left: 7.992344e-03	ci right 9.088350e-03	k: 938	n:110000
C3   110000 perm   67 sec   (1637 perm/sec)   p_kst 8.527273e-03   p_cons 6.290909e-01   p_joint 2.396364e-02

Joint ci ratio: 7.786549e-02	ci left: 1.987734e-02	ci right 2.149594e-02	k: 2481	n:120000
Cons ci ratio: 8.686644e-03	ci left: 6.264765e-01	ci right 6.319505e-01	k: 75506	n:120000
KS ci ratio: 1.187988e-01	ci left: 8.457212e-03	ci right 9.533385e-03	k: 1078	n:120000
C3   120000 perm   74 sec   (1626 perm/sec)   p_kst 8.983333e-03   p_cons 6.292167e-01   p_joint 2.067500e-02

Joint ci ratio: 7.105402e-02	ci left: 2.206344e-02	ci right 2.369640e-02	k: 2973	n:130000
Cons ci ratio: 8.342171e-03	ci left: 6.267910e-01	ci right 6.320494e-01	k: 81825	n:130000
KS ci ratio: 1.130655e-01	ci left: 8.643268e-03	ci right 9.686495e-03	k: 1190	n:130000
C3   130000 perm   81 sec   (1614 perm/sec)   p_kst 9.153846e-03   p_cons 6.294231e-01   p_joint 2.286923e-02

Joint ci ratio: 5.495301e-02	ci left: 3.410682e-02	ci right 3.604107e-02	k: 4909	n:140000
Cons ci ratio: 7.899988e-03	ci left: 6.349826e-01	ci right 6.400260e-01	k: 89251	n:140000
KS ci ratio: 1.088933e-01	ci left: 8.671747e-03	ci right 9.677311e-03	k: 1283	n:140000
C3   140000 perm   88 sec   (1599 perm/sec)   p_kst 9.164286e-03   p_cons 6.375071e-01   p_joint 3.506429e-02

Joint ci ratio: 5.598153e-02	ci left: 3.076650e-02	ci right 3.254500e-02	k: 4747	n:150000
Cons ci ratio: 7.630584e-03	ci left: 6.351614e-01	ci right 6.400333e-01	k: 95640	n:150000
KS ci ratio: 1.052286e-01	ci left: 8.684056e-03	ci right 9.655059e-03	k: 1374	n:150000
C3   150000 perm   95 sec   (1584 perm/sec)   p_kst 9.160000e-03   p_cons 6.376000e-01   p_joint 3.164667e-02

Joint ci ratio: 5.350172e-02	ci left: 3.159330e-02	ci right 3.333620e-02	k: 5193	n:160000
Cons ci ratio: 7.377396e-03	ci left: 6.359212e-01	ci right 6.406362e-01	k: 102125	n:160000
KS ci ratio: 1.017007e-01	ci left: 8.731877e-03	ci right 9.673537e-03	k: 1471	n:160000
C3   160000 perm   102 sec   (1573 perm/sec)   p_kst 9.193750e-03   p_cons 6.382813e-01   p_joint 3.245625e-02

Joint ci ratio: 5.231041e-02	ci left: 3.113937e-02	ci right 3.281782e-02	k: 5435	n:170000
Cons ci ratio: 7.157931e-03	ci left: 6.359400e-01	ci right 6.405142e-01	k: 108499	n:170000
KS ci ratio: 9.879175e-02	ci left: 8.722904e-03	ci right 9.635129e-03	k: 1559	n:170000
C3   170000 perm   112 sec   (1523 perm/sec)   p_kst 9.170588e-03   p_cons 6.382294e-01   p_joint 3.197059e-02

Outputting figure to mutsig2_images.part000000000025/C3.7_5156_170000_0.0091706_0.63823_0.031971.png
                gene_name: C3
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 9 percent done.
C4orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
KS ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
C4orf35   10000 perm   2 sec   (5864 perm/sec)   p_kst 1.704000e-01   p_cons 5.961000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf35.7_1192_10000_0.1704_0.5961_0.354.png
                gene_name: C4orf35
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 11 percent done.
C4BPA
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
Cons ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
KS ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
C4BPA   10000 perm   2 sec   (5871 perm/sec)   p_kst 5.080000e-02   p_cons 5.471000e-01   p_joint 1.158000e-01

Joint ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
Cons ci ratio: 2.518747e-02	ci left: 5.407706e-01	ci right 5.546156e-01	k: 10954	n:20000
KS ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
C4BPA   20000 perm   8 sec   (2510 perm/sec)   p_kst 4.980000e-02   p_cons 5.477000e-01   p_joint 1.330000e-01

Joint ci ratio: 7.193535e-02	ci left: 8.681754e-02	ci right 9.332876e-02	k: 2701	n:30000
Cons ci ratio: 2.017734e-02	ci left: 5.514905e-01	ci right 5.627651e-01	k: 16714	n:30000
KS ci ratio: 9.742521e-02	ci left: 4.870025e-02	ci right 5.372045e-02	k: 1535	n:30000
C4BPA   30000 perm   15 sec   (2034 perm/sec)   p_kst 5.116667e-02   p_cons 5.571333e-01   p_joint 9.003333e-02

Outputting figure to mutsig2_images.part000000000025/C4BPA.5_1838_30000_0.051167_0.55713_0.090033.png
                gene_name: C4BPA
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 13 percent done.
C4orf40
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
KS ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
C4orf40   10000 perm   3 sec   (3062 perm/sec)   p_kst 9.588000e-01   p_cons 8.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf40.5_676_10000_0.9588_0.8474_1.png
                gene_name: C4orf40
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
C2orf86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
KS ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
C2orf86   10000 perm   2 sec   (5733 perm/sec)   p_kst 7.900000e-01   p_cons 9.086000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C2orf86.5_2339_10000_0.79_0.9086_1.png
                gene_name: C2orf86
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
C3AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
C3AR1   10000 perm   2 sec   (5836 perm/sec)   p_kst 2.061000e-01   p_cons 7.400000e-02   p_joint 1.393000e-01

Joint ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
Cons ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
KS ci ratio: 5.474448e-02	ci left: 1.984336e-01	ci right 2.096526e-01	k: 4080	n:20000
C3AR1   20000 perm   5 sec   (3777 perm/sec)   p_kst 2.040000e-01   p_cons 7.215000e-02   p_joint 6.295000e-02

Joint ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
Cons ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
KS ci ratio: 4.483463e-02	ci left: 1.984937e-01	ci right 2.076305e-01	k: 6091	n:30000
C3AR1   30000 perm   8 sec   (3714 perm/sec)   p_kst 2.030333e-01   p_cons 6.416667e-02   p_joint 5.603333e-02

Outputting figure to mutsig2_images.part000000000025/C3AR1.5_1453_30000_0.20303_0.064167_0.056033.png
                gene_name: C3AR1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.059 

Current progress: 20 percent done.
C3orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
Cons ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
KS ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
C3orf15   10000 perm   3 sec   (3063 perm/sec)   p_kst 2.793000e-01   p_cons 1.267000e-01   p_joint 2.155000e-01

Joint ci ratio: 5.012231e-02	ci left: 2.282951e-01	ci right 2.400822e-01	k: 4683	n:20000
Cons ci ratio: 7.083112e-02	ci left: 1.280762e-01	ci right 1.375308e-01	k: 2655	n:20000
KS ci ratio: 4.424532e-02	ci left: 2.755722e-01	ci right 2.880913e-01	k: 5636	n:20000
C3orf15   20000 perm   6 sec   (3429 perm/sec)   p_kst 2.818000e-01   p_cons 1.327500e-01   p_joint 2.341500e-01

Outputting figure to mutsig2_images.part000000000025/C3orf15.5_2372_20000_0.2818_0.13275_0.23415.png
                gene_name: C3orf15
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
C3orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
C3orf30   10000 perm   5 sec   (2135 perm/sec)   p_kst 7.413000e-01   p_cons 5.610000e-02   p_joint 2.119000e-01

Joint ci ratio: 6.343949e-02	ci left: 1.551906e-01	ci right 1.654083e-01	k: 3205	n:20000
Cons ci ratio: 1.141814e-01	ci left: 5.246402e-02	ci right 5.886593e-02	k: 1112	n:20000
KS ci ratio: 1.677166e-02	ci left: 7.258032e-01	ci right 7.381293e-01	k: 14640	n:20000
C3orf30   20000 perm   8 sec   (2397 perm/sec)   p_kst 7.320000e-01   p_cons 5.560000e-02   p_joint 1.602500e-01

Joint ci ratio: 6.110426e-02	ci left: 1.169351e-01	ci right 1.243386e-01	k: 3618	n:30000
Cons ci ratio: 9.369085e-02	ci left: 5.254451e-02	ci right 5.774206e-02	k: 1653	n:30000
KS ci ratio: 1.322106e-02	ci left: 7.405978e-01	ci right 7.504879e-01	k: 22367	n:30000
C3orf30   30000 perm   11 sec   (2856 perm/sec)   p_kst 7.455667e-01   p_cons 5.510000e-02   p_joint 1.206000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf30.5_1623_30000_0.74557_0.0551_0.1206.png
                gene_name: C3orf30
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 24 percent done.
C5orf22
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
Cons ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
KS ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
C5orf22   10000 perm   2 sec   (6420 perm/sec)   p_kst 2.402000e-01   p_cons 3.337000e-01   p_joint 2.183000e-01

Outputting figure to mutsig2_images.part000000000025/C5orf22.4_1365_10000_0.2402_0.3337_0.2183.png
                gene_name: C5orf22
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 26 percent done.
C3orf1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
Cons ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
KS ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
C3orf1   10000 perm   2 sec   (5383 perm/sec)   p_kst 2.889000e-01   p_cons 9.431000e-01   p_joint 5.070000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf1.4_886_10000_0.2889_0.9431_0.507.png
                gene_name: C3orf1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 28 percent done.
C3orf20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 2.467494e-02	ci left: 7.072516e-01	ci right 7.250223e-01	k: 7162	n:10000
C3orf20   10000 perm   2 sec   (5761 perm/sec)   p_kst 7.162000e-01   p_cons 5.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf20.4_2775_10000_0.7162_0.544_1.png
                gene_name: C3orf20
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
C3orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
C3orf63   10000 perm   2 sec   (5559 perm/sec)   p_kst 3.190000e-02   p_cons 9.968000e-01   p_joint 1.006000e-01

Joint ci ratio: 7.816569e-02	ci left: 1.073170e-01	ci right 1.160963e-01	k: 2233	n:20000
Cons ci ratio: 1.532957e-03	ci left: 9.961401e-01	ci right 9.977099e-01	k: 19940	n:20000
KS ci ratio: 1.540727e-01	ci left: 2.893010e-02	ci right 3.380740e-02	k: 626	n:20000
C3orf63   20000 perm   4 sec   (5022 perm/sec)   p_kst 3.130000e-02   p_cons 9.970000e-01   p_joint 1.116500e-01

Joint ci ratio: 7.519258e-02	ci left: 7.993474e-02	ci right 8.621295e-02	k: 2491	n:30000
Cons ci ratio: 1.234436e-03	ci left: 9.963873e-01	ci right 9.976467e-01	k: 29912	n:30000
KS ci ratio: 1.240085e-01	ci left: 3.023114e-02	ci right 3.426011e-02	k: 966	n:30000
C3orf63   30000 perm   6 sec   (4815 perm/sec)   p_kst 3.220000e-02   p_cons 9.970667e-01   p_joint 8.303333e-02

Joint ci ratio: 6.862225e-02	ci left: 7.283089e-02	ci right 7.803095e-02	k: 3016	n:40000
Cons ci ratio: 1.056960e-03	ci left: 9.965500e-01	ci right 9.976258e-01	k: 39885	n:40000
KS ci ratio: 1.073662e-01	ci left: 3.051591e-02	ci right 3.400243e-02	k: 1289	n:40000
C3orf63   40000 perm   9 sec   (4694 perm/sec)   p_kst 3.222500e-02   p_cons 9.971250e-01   p_joint 7.540000e-02

Joint ci ratio: 6.340306e-02	ci left: 6.876382e-02	ci right 7.328613e-02	k: 3550	n:50000
Cons ci ratio: 9.743714e-04	ci left: 9.964158e-01	ci right 9.974051e-01	k: 49847	n:50000
KS ci ratio: 9.833958e-02	ci left: 2.928335e-02	ci right 3.233145e-02	k: 1539	n:50000
C3orf63   50000 perm   11 sec   (4588 perm/sec)   p_kst 3.078000e-02   p_cons 9.969400e-01   p_joint 7.100000e-02

Outputting figure to mutsig2_images.part000000000025/C3orf63.4_5169_50000_0.03078_0.99694_0.071.png
                gene_name: C3orf63
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 33 percent done.
C4orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
C4orf37   10000 perm   1 sec   (6964 perm/sec)   p_kst 8.646000e-01   p_cons 5.560000e-02   p_joint 2.455000e-01

Joint ci ratio: 5.105519e-02	ci left: 2.218041e-01	ci right 2.334752e-01	k: 4552	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 1.092784e-02	ci left: 8.606933e-01	ci right 8.702002e-01	k: 17310	n:20000
C4orf37   20000 perm   3 sec   (6193 perm/sec)   p_kst 8.655000e-01   p_cons 5.655000e-02   p_joint 2.276000e-01

Joint ci ratio: 3.497308e-02	ci left: 2.899755e-01	ci right 3.003309e-01	k: 8854	n:30000
Cons ci ratio: 9.265777e-02	ci left: 5.368549e-02	ci right 5.893419e-02	k: 1688	n:30000
KS ci ratio: 9.035636e-03	ci left: 8.585851e-01	ci right 8.664113e-01	k: 25876	n:30000
C4orf37   30000 perm   5 sec   (5893 perm/sec)   p_kst 8.625333e-01   p_cons 5.626667e-02   p_joint 2.951333e-01

Outputting figure to mutsig2_images.part000000000025/C4orf37.4_1424_30000_0.86253_0.056267_0.29513.png
                gene_name: C4orf37
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 35 percent done.
C4orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
C4orf41   10000 perm   2 sec   (5802 perm/sec)   p_kst 2.303000e-01   p_cons 5.756000e-01   p_joint 4.817000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf41.4_3518_10000_0.2303_0.5756_0.4817.png
                gene_name: C4orf41
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 37 percent done.
C5AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
KS ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
C5AR1   10000 perm   1 sec   (6982 perm/sec)   p_kst 9.594000e-01   p_cons 9.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C5AR1.4_1060_10000_0.9594_0.9703_1.png
                gene_name: C5AR1
               theta_stop: 0.0081 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
C3orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
Cons ci ratio: 7.043147e-02	ci left: 2.281004e-01	ci right 2.448534e-01	k: 2364	n:10000
KS ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
C3orf21   10000 perm   1 sec   (7185 perm/sec)   p_kst 2.315000e-01   p_cons 2.364000e-01   p_joint 1.213000e-01

Joint ci ratio: 6.539360e-02	ci left: 1.472968e-01	ci right 1.573045e-01	k: 3045	n:20000
Cons ci ratio: 4.992747e-02	ci left: 2.296828e-01	ci right 2.414942e-01	k: 4711	n:20000
KS ci ratio: 5.065202e-02	ci left: 2.245786e-01	ci right 2.362998e-01	k: 4608	n:20000
C3orf21   20000 perm   3 sec   (6321 perm/sec)   p_kst 2.304000e-01   p_cons 2.355500e-01   p_joint 1.522500e-01

Outputting figure to mutsig2_images.part000000000025/C3orf21.3_1198_20000_0.2304_0.23555_0.15225.png
                gene_name: C3orf21
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 41 percent done.
C3orf32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
Cons ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
KS ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
C3orf32   10000 perm   1 sec   (7353 perm/sec)   p_kst 3.624000e-01   p_cons 1.661000e-01   p_joint 2.553000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf32.3_1098_10000_0.3624_0.1661_0.2553.png
                gene_name: C3orf32
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 43 percent done.
C3orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
C3orf58   10000 perm   2 sec   (6197 perm/sec)   p_kst 3.387000e-01   p_cons 3.200000e-03   p_joint 1.430000e-02

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
KS ci ratio: 3.759633e-02	ci left: 3.454775e-01	ci right 3.587655e-01	k: 7042	n:20000
C3orf58   20000 perm   3 sec   (5731 perm/sec)   p_kst 3.521000e-01   p_cons 3.700000e-03   p_joint 1.535000e-02

Joint ci ratio: 1.525583e-01	ci left: 1.988850e-02	ci right 2.320506e-02	k: 645	n:30000
Cons ci ratio: 3.713748e-01	ci left: 3.014489e-03	ci right 4.417661e-03	k: 110	n:30000
KS ci ratio: 3.086504e-02	ci left: 3.442354e-01	ci right 3.550604e-01	k: 10489	n:30000
C3orf58   30000 perm   5 sec   (5600 perm/sec)   p_kst 3.496333e-01   p_cons 3.666667e-03   p_joint 2.150000e-02

Joint ci ratio: 1.181094e-01	ci left: 2.521499e-02	ci right 2.840421e-02	k: 1071	n:40000
Cons ci ratio: 3.132347e-01	ci left: 3.289902e-03	ci right 4.533824e-03	k: 155	n:40000
KS ci ratio: 2.689330e-02	ci left: 3.422093e-01	ci right 3.515630e-01	k: 13875	n:40000
C3orf58   40000 perm   7 sec   (5488 perm/sec)   p_kst 3.468750e-01   p_cons 3.875000e-03   p_joint 2.677500e-02

Joint ci ratio: 1.206380e-01	ci left: 1.943109e-02	ci right 2.194499e-02	k: 1033	n:50000
Cons ci ratio: 2.861194e-01	ci left: 3.205375e-03	ci right 4.293492e-03	k: 186	n:50000
KS ci ratio: 2.414248e-02	ci left: 3.410517e-01	ci right 3.494062e-01	k: 17261	n:50000
C3orf58   50000 perm   9 sec   (5367 perm/sec)   p_kst 3.452200e-01   p_cons 3.720000e-03   p_joint 2.066000e-02

Joint ci ratio: 9.889680e-02	ci left: 2.425331e-02	ci right 2.679286e-02	k: 1530	n:60000
Cons ci ratio: 2.579791e-01	ci left: 3.339081e-03	ci right 4.343184e-03	k: 229	n:60000
KS ci ratio: 2.204579e-02	ci left: 3.412787e-01	ci right 3.489030e-01	k: 20705	n:60000
C3orf58   60000 perm   11 sec   (5232 perm/sec)   p_kst 3.450833e-01   p_cons 3.816667e-03   p_joint 2.550000e-02

Joint ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
Cons ci ratio: 2.435967e-01	ci left: 3.236925e-03	ci right 4.147836e-03	k: 257	n:70000
KS ci ratio: 2.042915e-02	ci left: 3.411501e-01	ci right 3.482057e-01	k: 24127	n:70000
C3orf58   70000 perm   14 sec   (5038 perm/sec)   p_kst 3.446714e-01   p_cons 3.671429e-03   p_joint 2.398571e-02

Joint ci ratio: 8.373746e-02	ci left: 2.554488e-02	ci right 2.778962e-02	k: 2132	n:80000
Cons ci ratio: 2.297713e-01	ci left: 3.208600e-03	ci right 4.053027e-03	k: 289	n:80000
KS ci ratio: 1.912552e-02	ci left: 3.410070e-01	ci right 3.476043e-01	k: 27544	n:80000
C3orf58   80000 perm   16 sec   (4967 perm/sec)   p_kst 3.443000e-01   p_cons 3.612500e-03   p_joint 2.665000e-02

Joint ci ratio: 6.765939e-02	ci left: 3.473770e-02	ci right 3.718122e-02	k: 3235	n:90000
Cons ci ratio: 2.177217e-01	ci left: 3.198215e-03	ci right 3.989867e-03	k: 322	n:90000
KS ci ratio: 1.805620e-02	ci left: 3.405855e-01	ci right 3.468023e-01	k: 30932	n:90000
C3orf58   90000 perm   18 sec   (4899 perm/sec)   p_kst 3.436889e-01   p_cons 3.577778e-03   p_joint 3.594444e-02

Joint ci ratio: 6.091872e-02	ci left: 3.854746e-02	ci right 4.097932e-02	k: 3975	n:100000
Cons ci ratio: 2.039668e-01	ci left: 3.304673e-03	ci right 4.064562e-03	k: 367	n:100000
KS ci ratio: 1.714025e-02	ci left: 3.404665e-01	ci right 3.463626e-01	k: 34341	n:100000
C3orf58   100000 perm   21 sec   (4828 perm/sec)   p_kst 3.434100e-01   p_cons 3.670000e-03   p_joint 3.975000e-02

Joint ci ratio: 5.845780e-02	ci left: 3.812350e-02	ci right 4.042815e-02	k: 4319	n:110000
Cons ci ratio: 1.927617e-01	ci left: 3.384408e-03	ci right 4.114868e-03	k: 411	n:110000
KS ci ratio: 1.635881e-02	ci left: 3.401580e-01	ci right 3.457775e-01	k: 37726	n:110000
C3orf58   110000 perm   23 sec   (4761 perm/sec)   p_kst 3.429636e-01   p_cons 3.736364e-03   p_joint 3.926364e-02

Joint ci ratio: 5.611630e-02	ci left: 3.797741e-02	ci right 4.017827e-02	k: 4688	n:120000
Cons ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
KS ci ratio: 1.565129e-02	ci left: 3.405966e-01	ci right 3.459777e-01	k: 41194	n:120000
C3orf58   120000 perm   26 sec   (4691 perm/sec)   p_kst 3.432833e-01   p_cons 3.733333e-03   p_joint 3.906667e-02

Joint ci ratio: 6.014838e-02	ci left: 3.068601e-02	ci right 3.259650e-02	k: 4112	n:130000
Cons ci ratio: 1.765721e-01	ci left: 3.443389e-03	ci right 4.117505e-03	k: 490	n:130000
KS ci ratio: 1.508019e-02	ci left: 3.394210e-01	ci right 3.445861e-01	k: 44460	n:130000
C3orf58   130000 perm   28 sec   (4620 perm/sec)   p_kst 3.420000e-01   p_cons 3.769231e-03   p_joint 3.163077e-02

Joint ci ratio: 5.786193e-02	ci left: 3.082361e-02	ci right 3.266728e-02	k: 4443	n:140000
Cons ci ratio: 1.696297e-01	ci left: 3.477610e-03	ci right 4.128921e-03	k: 531	n:140000
KS ci ratio: 1.450931e-02	ci left: 3.402065e-01	ci right 3.451858e-01	k: 47977	n:140000
C3orf58   140000 perm   31 sec   (4551 perm/sec)   p_kst 3.426929e-01   p_cons 3.792857e-03   p_joint 3.173571e-02

Joint ci ratio: 5.606084e-02	ci left: 3.068101e-02	ci right 3.245716e-02	k: 4734	n:150000
Cons ci ratio: 1.654886e-01	ci left: 3.418212e-03	ci right 4.041213e-03	k: 558	n:150000
KS ci ratio: 1.402791e-02	ci left: 3.399518e-01	ci right 3.447609e-01	k: 51353	n:150000
C3orf58   150000 perm   33 sec   (4486 perm/sec)   p_kst 3.423533e-01   p_cons 3.720000e-03   p_joint 3.156000e-02

Joint ci ratio: 5.753581e-02	ci left: 2.738196e-02	ci right 2.901020e-02	k: 4510	n:160000
Cons ci ratio: 1.601348e-01	ci left: 3.432401e-03	ci right 4.035802e-03	k: 596	n:160000
KS ci ratio: 1.358221e-02	ci left: 3.400372e-01	ci right 3.446935e-01	k: 54778	n:160000
C3orf58   160000 perm   36 sec   (4421 perm/sec)   p_kst 3.423625e-01   p_cons 3.725000e-03   p_joint 2.818750e-02

Joint ci ratio: 5.224591e-02	ci left: 3.121488e-02	ci right 3.289525e-02	k: 5448	n:170000
Cons ci ratio: 1.546592e-01	ci left: 3.473481e-03	ci right 4.061289e-03	k: 639	n:170000
KS ci ratio: 1.318540e-02	ci left: 3.398094e-01	ci right 3.443254e-01	k: 58151	n:170000
C3orf58   170000 perm   39 sec   (4351 perm/sec)   p_kst 3.420647e-01   p_cons 3.758824e-03   p_joint 3.204706e-02

Joint ci ratio: 5.086290e-02	ci left: 3.113134e-02	ci right 3.276155e-02	k: 5749	n:180000
Cons ci ratio: 1.500405e-01	ci left: 3.494264e-03	ci right 4.066345e-03	k: 679	n:180000
KS ci ratio: 1.281766e-02	ci left: 3.397417e-01	ci right 3.441300e-01	k: 61548	n:180000
C3orf58   180000 perm   42 sec   (4288 perm/sec)   p_kst 3.419333e-01   p_cons 3.772222e-03   p_joint 3.193889e-02

Joint ci ratio: 4.940737e-02	ci left: 3.127554e-02	ci right 3.286510e-02	k: 6092	n:190000
Cons ci ratio: 1.460160e-01	ci left: 3.502949e-03	ci right 4.059728e-03	k: 717	n:190000
KS ci ratio: 1.247614e-02	ci left: 3.397879e-01	ci right 3.440590e-01	k: 64965	n:190000
C3orf58   190000 perm   45 sec   (4222 perm/sec)   p_kst 3.419211e-01   p_cons 3.773684e-03   p_joint 3.206316e-02

Joint ci ratio: 4.813962e-02	ci left: 3.131696e-02	ci right 3.286664e-02	k: 6417	n:200000
Cons ci ratio: 1.423935e-01	ci left: 3.506128e-03	ci right 4.048411e-03	k: 754	n:200000
KS ci ratio: 1.216122e-02	ci left: 3.398059e-01	ci right 3.439686e-01	k: 68377	n:200000
C3orf58   200000 perm   48 sec   (4162 perm/sec)   p_kst 3.418850e-01   p_cons 3.770000e-03   p_joint 3.208500e-02

Joint ci ratio: 4.700794e-02	ci left: 3.129841e-02	ci right 3.280978e-02	k: 6730	n:210000
Cons ci ratio: 1.382417e-01	ci left: 3.550533e-03	ci right 4.082355e-03	k: 800	n:210000
KS ci ratio: 1.186687e-02	ci left: 3.399043e-01	ci right 3.439667e-01	k: 71806	n:210000
C3orf58   210000 perm   51 sec   (4105 perm/sec)   p_kst 3.419333e-01   p_cons 3.809524e-03   p_joint 3.204762e-02

Joint ci ratio: 4.897592e-02	ci left: 2.760202e-02	ci right 2.899226e-02	k: 6224	n:220000
Cons ci ratio: 1.345926e-01	ci left: 3.582324e-03	ci right 4.103610e-03	k: 844	n:220000
KS ci ratio: 1.159501e-02	ci left: 3.399132e-01	ci right 3.438819e-01	k: 75217	n:220000
C3orf58   220000 perm   54 sec   (4051 perm/sec)   p_kst 3.418955e-01   p_cons 3.836364e-03   p_joint 2.829091e-02

Joint ci ratio: 4.780481e-02	ci left: 2.772490e-02	ci right 2.908702e-02	k: 6532	n:230000
Cons ci ratio: 1.311439e-01	ci left: 3.615724e-03	ci right 4.127339e-03	k: 889	n:230000
KS ci ratio: 1.132909e-02	ci left: 3.403955e-01	ci right 3.442781e-01	k: 78737	n:230000
C3orf58   230000 perm   58 sec   (3995 perm/sec)   p_kst 3.423348e-01   p_cons 3.865217e-03   p_joint 2.840000e-02

Joint ci ratio: 4.664724e-02	ci left: 2.791617e-02	ci right 2.925358e-02	k: 6859	n:240000
Cons ci ratio: 1.280162e-01	ci left: 3.642463e-03	ci right 4.144635e-03	k: 933	n:240000
KS ci ratio: 1.108618e-02	ci left: 3.406138e-01	ci right 3.444150e-01	k: 82203	n:240000
C3orf58   240000 perm   61 sec   (3942 perm/sec)   p_kst 3.425125e-01   p_cons 3.887500e-03   p_joint 2.857917e-02

Joint ci ratio: 4.311714e-02	ci left: 3.131352e-02	ci right 3.269736e-02	k: 8000	n:250000
Cons ci ratio: 1.256840e-01	ci left: 3.632321e-03	ci right 4.123292e-03	k: 968	n:250000
KS ci ratio: 1.086057e-02	ci left: 3.407195e-01	ci right 3.444441e-01	k: 85645	n:250000
C3orf58   250000 perm   64 sec   (3889 perm/sec)   p_kst 3.425800e-01   p_cons 3.872000e-03   p_joint 3.200000e-02

Joint ci ratio: 4.222231e-02	ci left: 3.141054e-02	ci right 3.276915e-02	k: 8342	n:260000
Cons ci ratio: 1.236604e-01	ci left: 3.611852e-03	ci right 4.091620e-03	k: 1000	n:260000
KS ci ratio: 1.065593e-02	ci left: 3.404914e-01	ci right 3.441429e-01	k: 89002	n:260000
C3orf58   260000 perm   68 sec   (3836 perm/sec)   p_kst 3.423154e-01   p_cons 3.846154e-03   p_joint 3.208462e-02

Joint ci ratio: 4.128285e-02	ci left: 3.164731e-02	ci right 3.298498e-02	k: 8724	n:270000
Cons ci ratio: 1.213781e-01	ci left: 3.614507e-03	ci right 4.085130e-03	k: 1038	n:270000
KS ci ratio: 1.045727e-02	ci left: 3.405027e-01	ci right 3.440858e-01	k: 92419	n:270000
C3orf58   270000 perm   71 sec   (3781 perm/sec)   p_kst 3.422926e-01   p_cons 3.844444e-03   p_joint 3.231111e-02

Joint ci ratio: 4.061125e-02	ci left: 3.154919e-02	ci right 3.286051e-02	k: 9016	n:280000
Cons ci ratio: 1.196646e-01	ci left: 3.589328e-03	ci right 4.049608e-03	k: 1068	n:280000
KS ci ratio: 1.027152e-02	ci left: 3.404175e-01	ci right 3.439357e-01	k: 95809	n:280000
C3orf58   280000 perm   75 sec   (3731 perm/sec)   p_kst 3.421750e-01   p_cons 3.814286e-03   p_joint 3.220000e-02

Joint ci ratio: 3.991162e-02	ci left: 3.155021e-02	ci right 3.283847e-02	k: 9335	n:290000
Cons ci ratio: 1.177532e-01	ci left: 3.582663e-03	ci right 4.034239e-03	k: 1103	n:290000
KS ci ratio: 1.009657e-02	ci left: 3.402837e-01	ci right 3.437402e-01	k: 99183	n:290000
C3orf58   290000 perm   79 sec   (3680 perm/sec)   p_kst 3.420103e-01   p_cons 3.803448e-03   p_joint 3.218966e-02

Joint ci ratio: 3.925955e-02	ci left: 3.153154e-02	ci right 3.279752e-02	k: 9648	n:300000
Cons ci ratio: 1.160840e-01	ci left: 3.566786e-03	ci right 4.009551e-03	k: 1135	n:300000
KS ci ratio: 9.928785e-03	ci left: 3.402258e-01	ci right 3.436239e-01	k: 102577	n:300000
C3orf58   300000 perm   83 sec   (3633 perm/sec)   p_kst 3.419233e-01   p_cons 3.783333e-03   p_joint 3.216000e-02

Joint ci ratio: 3.868258e-02	ci left: 3.144393e-02	ci right 3.268742e-02	k: 9939	n:310000
Cons ci ratio: 1.145331e-01	ci left: 3.548842e-03	ci right 3.983096e-03	k: 1166	n:310000
KS ci ratio: 9.768400e-03	ci left: 3.402043e-01	ci right 3.435470e-01	k: 105981	n:310000
C3orf58   310000 perm   86 sec   (3586 perm/sec)   p_kst 3.418742e-01   p_cons 3.761290e-03   p_joint 3.206129e-02

Joint ci ratio: 3.812646e-02	ci left: 3.136811e-02	ci right 3.259038e-02	k: 10232	n:320000
Cons ci ratio: 1.129481e-01	ci left: 3.538131e-03	ci right 3.964683e-03	k: 1199	n:320000
KS ci ratio: 9.608203e-03	ci left: 3.405279e-01	ci right 3.438187e-01	k: 109495	n:320000
C3orf58   320000 perm   90 sec   (3540 perm/sec)   p_kst 3.421719e-01   p_cons 3.746875e-03   p_joint 3.197500e-02

Joint ci ratio: 3.746699e-02	ci left: 3.150421e-02	ci right 3.271009e-02	k: 10594	n:330000
Cons ci ratio: 1.109763e-01	ci left: 3.557571e-03	ci right 3.978490e-03	k: 1242	n:330000
KS ci ratio: 9.455568e-03	ci left: 3.408354e-01	ci right 3.440765e-01	k: 113010	n:330000
C3orf58   330000 perm   94 sec   (3498 perm/sec)   p_kst 3.424545e-01   p_cons 3.763636e-03   p_joint 3.210303e-02

Joint ci ratio: 3.694699e-02	ci left: 3.145465e-02	ci right 3.264158e-02	k: 10895	n:340000
Cons ci ratio: 1.096621e-01	ci left: 3.538735e-03	ci right 3.952147e-03	k: 1272	n:340000
KS ci ratio: 9.314904e-03	ci left: 3.408872e-01	ci right 3.440802e-01	k: 116444	n:340000
C3orf58   340000 perm   98 sec   (3455 perm/sec)   p_kst 3.424824e-01   p_cons 3.741176e-03   p_joint 3.204412e-02

Joint ci ratio: 3.635257e-02	ci left: 3.156947e-02	ci right 3.274115e-02	k: 11253	n:350000
Cons ci ratio: 1.078137e-01	ci left: 3.559926e-03	ci right 3.968358e-03	k: 1316	n:350000
KS ci ratio: 9.180629e-03	ci left: 3.409220e-01	ci right 3.440692e-01	k: 119873	n:350000
C3orf58   350000 perm   103 sec   (3414 perm/sec)   p_kst 3.424943e-01   p_cons 3.760000e-03   p_joint 3.215143e-02

Joint ci ratio: 3.581463e-02	ci left: 3.162848e-02	ci right 3.278463e-02	k: 11593	n:360000
Cons ci ratio: 1.061340e-01	ci left: 3.574585e-03	ci right 3.977911e-03	k: 1358	n:360000
KS ci ratio: 9.056409e-03	ci left: 3.407361e-01	ci right 3.438387e-01	k: 123223	n:360000
C3orf58   360000 perm   107 sec   (3375 perm/sec)   p_kst 3.422861e-01   p_cons 3.772222e-03   p_joint 3.220278e-02

Joint ci ratio: 3.530752e-02	ci left: 3.167102e-02	ci right 3.281200e-02	k: 11928	n:370000
Cons ci ratio: 1.046429e-01	ci left: 3.580603e-03	ci right 3.978582e-03	k: 1397	n:370000
KS ci ratio: 8.932537e-03	ci left: 3.407899e-01	ci right 3.438504e-01	k: 126658	n:370000
C3orf58   370000 perm   111 sec   (3338 perm/sec)   p_kst 3.423189e-01   p_cons 3.775676e-03   p_joint 3.223784e-02

Joint ci ratio: 3.505688e-02	ci left: 3.129655e-02	ci right 3.241587e-02	k: 12104	n:380000
Cons ci ratio: 1.031770e-01	ci left: 3.588904e-03	ci right 3.981880e-03	k: 1437	n:380000
KS ci ratio: 8.815365e-03	ci left: 3.407519e-01	ci right 3.437716e-01	k: 130059	n:380000
C3orf58   380000 perm   115 sec   (3299 perm/sec)   p_kst 3.422605e-01   p_cons 3.781579e-03   p_joint 3.185263e-02

Joint ci ratio: 3.436320e-02	ci left: 3.173462e-02	ci right 3.284671e-02	k: 12592	n:390000
Cons ci ratio: 1.021183e-01	ci left: 3.571828e-03	ci right 3.958679e-03	k: 1467	n:390000
KS ci ratio: 8.702091e-03	ci left: 3.407467e-01	ci right 3.437274e-01	k: 133472	n:390000
C3orf58   390000 perm   120 sec   (3262 perm/sec)   p_kst 3.422359e-01   p_cons 3.761538e-03   p_joint 3.228718e-02

Joint ci ratio: 3.392945e-02	ci left: 3.174434e-02	ci right 3.284245e-02	k: 12916	n:400000
Cons ci ratio: 1.008889e-01	ci left: 3.570247e-03	ci right 3.951997e-03	k: 1503	n:400000
KS ci ratio: 8.591786e-03	ci left: 3.408095e-01	ci right 3.437528e-01	k: 136912	n:400000
C3orf58   400000 perm   124 sec   (3225 perm/sec)   p_kst 3.422800e-01   p_cons 3.757500e-03   p_joint 3.229000e-02

Joint ci ratio: 3.338426e-02	ci left: 3.199076e-02	ci right 3.307928e-02	k: 13338	n:410000
Cons ci ratio: 9.970295e-02	ci left: 3.568770e-03	ci right 3.945614e-03	k: 1539	n:410000
KS ci ratio: 8.488054e-03	ci left: 3.407379e-01	ci right 3.436448e-01	k: 140298	n:410000
C3orf58   410000 perm   128 sec   (3191 perm/sec)   p_kst 3.421902e-01   p_cons 3.753659e-03   p_joint 3.253171e-02

Outputting figure to mutsig2_images.part000000000025/C3orf58.3_1339_410000_0.34219_0.0037537_0.032532.png
                gene_name: C3orf58
               theta_stop: 0.100 
                    nperm: 410000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0039 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.033 

Current progress: 46 percent done.
C3orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.528895e-02	ci left: 6.970623e-01	ci right 7.150175e-01	k: 7061	n:10000
KS ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
C3orf59   10000 perm   1 sec   (6738 perm/sec)   p_kst 7.673000e-01   p_cons 7.061000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf59.3_1484_10000_0.7673_0.7061_1.png
                gene_name: C3orf59
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
C3orf75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
Cons ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
KS ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
C3orf75   10000 perm   2 sec   (6492 perm/sec)   p_kst 3.975000e-01   p_cons 4.038000e-01   p_joint 4.611000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf75.3_829_10000_0.3975_0.4038_0.4611.png
                gene_name: C3orf75
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 50 percent done.
C4orf17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
Cons ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
KS ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
C4orf17   10000 perm   2 sec   (6596 perm/sec)   p_kst 1.243000e-01   p_cons 3.243000e-01   p_joint 1.570000e-01

Joint ci ratio: 4.202527e-02	ci left: 2.967344e-01	ci right 3.095229e-01	k: 6062	n:20000
Cons ci ratio: 4.036463e-02	ci left: 3.139344e-01	ci right 3.269178e-01	k: 6408	n:20000
KS ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
C4orf17   20000 perm   3 sec   (5747 perm/sec)   p_kst 1.306000e-01   p_cons 3.204000e-01   p_joint 3.031000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf17.3_1112_20000_0.1306_0.3204_0.3031.png
                gene_name: C4orf17
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 52 percent done.
C4orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
Cons ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
C4orf22   10000 perm   2 sec   (5740 perm/sec)   p_kst 6.871000e-01   p_cons 5.790000e-02   p_joint 1.920000e-01

Joint ci ratio: 3.922942e-02	ci left: 3.264183e-01	ci right 3.395303e-01	k: 6659	n:20000
Cons ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
KS ci ratio: 1.845933e-02	ci left: 6.863034e-01	ci right 6.991405e-01	k: 13855	n:20000
C4orf22   20000 perm   4 sec   (5046 perm/sec)   p_kst 6.927500e-01   p_cons 5.580000e-02   p_joint 3.329500e-01

Joint ci ratio: 2.998942e-02	ci left: 3.573893e-01	ci right 3.683039e-01	k: 10885	n:30000
Cons ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
KS ci ratio: 1.506210e-02	ci left: 6.877789e-01	ci right 6.982504e-01	k: 20791	n:30000
C4orf22   30000 perm   6 sec   (4763 perm/sec)   p_kst 6.930333e-01   p_cons 5.673333e-02   p_joint 3.628333e-01

Outputting figure to mutsig2_images.part000000000025/C4orf22.3_726_30000_0.69303_0.056733_0.36283.png
                gene_name: C4orf22
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 54 percent done.
C4orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
C4orf27   10000 perm   1 sec   (6802 perm/sec)   p_kst 1.990000e-02   p_cons 3.884000e-01   p_joint 3.520000e-02

Joint ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
Cons ci ratio: 3.518171e-02	ci left: 3.762055e-01	ci right 3.897286e-01	k: 7659	n:20000
KS ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
C4orf27   20000 perm   3 sec   (5902 perm/sec)   p_kst 1.935000e-02   p_cons 3.829500e-01   p_joint 2.595000e-02

Joint ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
Cons ci ratio: 2.885781e-02	ci left: 3.753003e-01	ci right 3.863228e-01	k: 11424	n:30000
KS ci ratio: 1.617551e-01	ci left: 1.764517e-02	ci right 2.078225e-02	k: 575	n:30000
C4orf27   30000 perm   5 sec   (5591 perm/sec)   p_kst 1.916667e-02   p_cons 3.808000e-01   p_joint 3.470000e-02

Joint ci ratio: 1.151626e-01	ci left: 2.652662e-02	ci right 2.979236e-02	k: 1125	n:40000
Cons ci ratio: 2.490744e-02	ci left: 3.776337e-01	ci right 3.871834e-01	k: 15296	n:40000
KS ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
C4orf27   40000 perm   7 sec   (5396 perm/sec)   p_kst 1.857500e-02   p_cons 3.824000e-01   p_joint 2.812500e-02

Joint ci ratio: 1.048393e-01	ci left: 2.577221e-02	ci right 2.864304e-02	k: 1359	n:50000
Cons ci ratio: 2.231873e-02	ci left: 3.772791e-01	ci right 3.858146e-01	k: 19077	n:50000
KS ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
C4orf27   50000 perm   10 sec   (5257 perm/sec)   p_kst 1.864000e-02   p_cons 3.815400e-01   p_joint 2.718000e-02

Joint ci ratio: 1.132320e-01	ci left: 1.847336e-02	ci right 2.070678e-02	k: 1174	n:60000
Cons ci ratio: 2.038462e-02	ci left: 3.774111e-01	ci right 3.852004e-01	k: 22878	n:60000
KS ci ratio: 1.154567e-01	ci left: 1.776062e-02	ci right 1.995293e-02	k: 1130	n:60000
C4orf27   60000 perm   12 sec   (5134 perm/sec)   p_kst 1.883333e-02   p_cons 3.813000e-01   p_joint 1.956667e-02

Joint ci ratio: 8.740954e-02	ci left: 2.670645e-02	ci right 2.916146e-02	k: 1954	n:70000
Cons ci ratio: 1.889431e-02	ci left: 3.771579e-01	ci right 3.843663e-01	k: 26653	n:70000
KS ci ratio: 1.027434e-01	ci left: 1.932377e-02	ci right 2.143053e-02	k: 1425	n:70000
C4orf27   70000 perm   14 sec   (5029 perm/sec)   p_kst 2.035714e-02   p_cons 3.807571e-01   p_joint 2.791429e-02

Joint ci ratio: 8.724674e-02	ci left: 2.353761e-02	ci right 2.569705e-02	k: 1968	n:80000
Cons ci ratio: 1.772269e-02	ci left: 3.760981e-01	ci right 3.828356e-01	k: 30357	n:80000
KS ci ratio: 9.544373e-02	ci left: 1.966351e-02	ci right 2.164647e-02	k: 1651	n:80000
C4orf27   80000 perm   16 sec   (4897 perm/sec)   p_kst 2.063750e-02   p_cons 3.794625e-01   p_joint 2.460000e-02

Outputting figure to mutsig2_images.part000000000025/C4orf27.3_1073_80000_0.020637_0.37946_0.0246.png
                gene_name: C4orf27
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 57 percent done.
C4orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
C4orf50   10000 perm   1 sec   (6812 perm/sec)   p_kst 8.461000e-01   p_cons 2.941000e-01   p_joint 6.333000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf50.3_859_10000_0.8461_0.2941_0.6333.png
                gene_name: C4orf50
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 59 percent done.
C2orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
Cons ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
KS ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
C2orf80   10000 perm   3 sec   (3559 perm/sec)   p_kst 5.823000e-01   p_cons 3.394000e-01   p_joint 5.932000e-01

Outputting figure to mutsig2_images.part000000000025/C2orf80.2_614_10000_0.5823_0.3394_0.5932.png
                gene_name: C2orf80
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 61 percent done.
C2orf89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
Cons ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KS ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
C2orf89   10000 perm   2 sec   (4976 perm/sec)   p_kst 4.287000e-01   p_cons 4.164000e-01   p_joint 3.512000e-01

Outputting figure to mutsig2_images.part000000000025/C2orf89.2_1395_10000_0.4287_0.4164_0.3512.png
                gene_name: C2orf89
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 63 percent done.
C3orf17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
C3orf17   10000 perm   2 sec   (5254 perm/sec)   p_kst 2.207000e-01   p_cons 7.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf17.2_1740_10000_0.2207_0.7056_1.png
                gene_name: C3orf17
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
C3orf19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
Cons ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
KS ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
C3orf19   10000 perm   6 sec   (1772 perm/sec)   p_kst 1.874000e-01   p_cons 8.896000e-01   p_joint 6.329000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf19.2_1448_10000_0.1874_0.8896_0.6329.png
                gene_name: C3orf19
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 67 percent done.
C3orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
Cons ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
KS ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
C3orf27   10000 perm   2 sec   (5321 perm/sec)   p_kst 7.914000e-01   p_cons 5.262000e-01   p_joint 9.912000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf27.2_454_10000_0.7914_0.5262_0.9912.png
                gene_name: C3orf27
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 70 percent done.
C3orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
Cons ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
C3orf35   10000 perm   3 sec   (3283 perm/sec)   p_kst 1.204000e-01   p_cons 6.570000e-02   p_joint 4.410000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 1.062227e-01	ci left: 6.035399e-02	ci right 6.717352e-02	k: 1274	n:20000
KS ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
C3orf35   20000 perm   7 sec   (2773 perm/sec)   p_kst 1.181000e-01   p_cons 6.370000e-02   p_joint 3.970000e-02

Joint ci ratio: 1.112595e-01	ci left: 3.751855e-02	ci right 4.197115e-02	k: 1191	n:30000
Cons ci ratio: 1.172823e-01	ci left: 3.379078e-02	ci right 3.803305e-02	k: 1076	n:30000
KS ci ratio: 6.198398e-02	ci left: 1.139753e-01	ci right 1.212990e-01	k: 3528	n:30000
C3orf35   30000 perm   13 sec   (2263 perm/sec)   p_kst 1.176000e-01   p_cons 3.586667e-02   p_joint 3.970000e-02

Joint ci ratio: 9.558412e-02	ci left: 3.841811e-02	ci right 4.229898e-02	k: 1613	n:40000
Cons ci ratio: 1.004861e-01	ci left: 3.480541e-02	ci right 3.851225e-02	k: 1465	n:40000
KS ci ratio: 5.381823e-02	ci left: 1.139396e-01	ci right 1.202661e-01	k: 4683	n:40000
C3orf35   40000 perm   19 sec   (2109 perm/sec)   p_kst 1.170750e-01   p_cons 3.662500e-02   p_joint 4.032500e-02

Joint ci ratio: 8.583741e-02	ci left: 3.831871e-02	ci right 4.177495e-02	k: 2001	n:50000
Cons ci ratio: 9.040395e-02	ci left: 3.459930e-02	ci right 3.789482e-02	k: 1811	n:50000
KS ci ratio: 4.811796e-02	ci left: 1.143533e-01	ci right 1.200112e-01	k: 5858	n:50000
C3orf35   50000 perm   25 sec   (1994 perm/sec)   p_kst 1.171600e-01   p_cons 3.622000e-02   p_joint 4.002000e-02

Outputting figure to mutsig2_images.part000000000025/C3orf35.2_655_50000_0.11716_0.03622_0.04002.png
                gene_name: C3orf35
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 72 percent done.
C3orf38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
Cons ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
KS ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
C3orf38   10000 perm   2 sec   (5584 perm/sec)   p_kst 7.097000e-01   p_cons 8.731000e-01   p_joint 9.703000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf38.2_1002_10000_0.7097_0.8731_0.9703.png
                gene_name: C3orf38
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 74 percent done.
C3orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.182352e-02	ci left: 5.930304e-01	ci right 6.123098e-01	k: 6027	n:10000
Cons ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
C3orf39   10000 perm   5 sec   (2124 perm/sec)   p_kst 6.344000e-01   p_cons 8.420000e-02   p_joint 6.027000e-01

Joint ci ratio: 2.787214e-02	ci left: 4.902464e-01	ci right 5.041544e-01	k: 9944	n:20000
Cons ci ratio: 9.030463e-02	ci left: 8.219878e-02	ci right 9.002205e-02	k: 1721	n:20000
KS ci ratio: 2.079252e-02	ci left: 6.332023e-01	ci right 6.465570e-01	k: 12798	n:20000
C3orf39   20000 perm   17 sec   (1209 perm/sec)   p_kst 6.399000e-01   p_cons 8.605000e-02   p_joint 4.972000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf39.2_1747_20000_0.6399_0.08605_0.4972.png
                gene_name: C3orf39
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 76 percent done.
C3orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
Cons ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
C3orf67   10000 perm   2 sec   (4092 perm/sec)   p_kst 6.405000e-01   p_cons 7.525000e-01   p_joint 9.770000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf67.2_1740_10000_0.6405_0.7525_0.977.png
                gene_name: C3orf67
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 78 percent done.
C3orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 3.291093e-02	ci left: 5.767739e-01	ci right 5.961757e-01	k: 5865	n:10000
C3orf79   10000 perm   5 sec   (2211 perm/sec)   p_kst 5.865000e-01   p_cons 7.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf79.2_315_10000_0.5865_0.7543_1.png
                gene_name: C3orf79
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
C4orf14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
C4orf14   10000 perm   5 sec   (2084 perm/sec)   p_kst 4.865000e-01   p_cons 9.798000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf14.2_2125_10000_0.4865_0.9798_1.png
                gene_name: C4orf14
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
C4orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
Cons ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
KS ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
C4orf23   10000 perm   3 sec   (3583 perm/sec)   p_kst 3.565000e-01   p_cons 8.341000e-01   p_joint 6.953000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf23.2_2318_10000_0.3565_0.8341_0.6953.png
                gene_name: C4orf23
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 85 percent done.
C4orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
Cons ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
C4orf33   10000 perm   1 sec   (7137 perm/sec)   p_kst 1.645000e-01   p_cons 8.974000e-01   p_joint 2.351000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf33.2_620_10000_0.1645_0.8974_0.2351.png
                gene_name: C4orf33
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
C4orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
C4orf39   10000 perm   2 sec   (4735 perm/sec)   p_kst 5.922000e-01   p_cons 7.093000e-01   p_joint 9.276000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf39.2_478_10000_0.5922_0.7093_0.9276.png
                gene_name: C4orf39
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
C4orf44
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 91 percent done.
C4orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
Cons ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
KS ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
C4orf45   10000 perm   2 sec   (5862 perm/sec)   p_kst 7.671000e-01   p_cons 3.297000e-01   p_joint 3.578000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf45.2_581_10000_0.7671_0.3297_0.3578.png
                gene_name: C4orf45
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 93 percent done.
C4orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
KS ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
C4orf51   10000 perm   11 sec   (906 perm/sec)   p_kst 5.374000e-01   p_cons 5.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf51.2_633_10000_0.5374_0.5601_1.png
                gene_name: C4orf51
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.009633e-02	ci left: 6.195460e-01	ci right 6.385788e-01	k: 6291	n:10000
Cons ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
KS ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
C5   10000 perm   2 sec   (4827 perm/sec)   p_kst 1.948000e-01   p_cons 8.939000e-01   p_joint 6.291000e-01

Outputting figure to mutsig2_images.part000000000025/C5.2_5195_10000_0.1948_0.8939_0.6291.png
                gene_name: C5
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 98 percent done.
C5orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
KS ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
C5orf28   10000 perm   3 sec   (3886 perm/sec)   p_kst 9.241000e-01   p_cons 5.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C5orf28.2_656_10000_0.9241_0.5664_1.png
                gene_name: C5orf28
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000025
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 25 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4421785: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000026> was used as the working directory.
Started at Wed Oct 24 17:33:50 2012
Results reported at Wed Oct 24 18:01:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000026.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000026.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 26  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000026.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1676.99 sec.
    Max Memory :      5338 MB
    Max Swap   :      7669 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
26
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 26
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 26: processing genes 2263 - 2352
Calculating significance of each gene.
Using projection method.
2263	C5orf30	1
2264	C5orf32	1
2265	C5orf33	1
2266	C5orf34	6.682653e-01
2267	C5orf35	6.215022e-01
2268	C5orf36	6.570563e-01
2269	C5orf38	1
2270	C5orf39	7.058051e-01
2271	C5orf4	1
2272	C5orf40	6.630888e-01
2273	C5orf41	1
2274	C5orf42	3.579289e-01
2275	C5orf43	1
2276	C5orf44	7.547604e-01
2277	C5orf45	8.776420e-01
2278	C5orf46	1
2279	C5orf48	1
2280	C5orf49	5.355891e-01
2281	C5orf51	1
2282	C5orf53	1
2283	C5orf54	1
2284	C5orf55	2.284884e-01
2285	C5orf56	1
2286	C5orf58	5.544747e-03
2287	C5orf62	1
2288	C6	8.731853e-01
2289	C6orf1	1
2290	C6orf10	8.738548e-01
2291	C6orf105	7.556484e-01
2292	C6orf106	8.558202e-01
2293	C6orf108	6.660101e-01
2294	C6orf114	2.048032e-01
2295	C6orf115	9.285471e-02
2296	C6orf118	1
2297	C6orf120	1
2298	C6orf125	1
2299	C6orf126	1
2300	C6orf127	1.922815e-01
2301	C6orf129	4.529537e-01
2302	C6orf130	1.958915e-01
2303	C6orf134	1
2304	C6orf136	7.152845e-01
2305	C6orf138	9.707796e-01
2306	C6orf142	2.100054e-02
2307	C6orf145	1
2308	C6orf146	1
2309	C6orf15	1.711381e-01
2310	C6orf150	1
2311	C6orf153	1
2312	C6orf154	5.360200e-01
2313	C6orf162	4.257112e-01
2314	C6orf165	8.615321e-01
2315	C6orf167	2.685764e-01
2316	C6orf168	1
2317	C6orf170	9.926366e-01
2318	C6orf174	9.146292e-01
2319	C6orf182	6.199498e-01
2320	C6orf186	6.724902e-01
2321	C6orf191	1.334474e-01
2322	C6orf192	1
2323	C6orf195	1
2324	C6orf201	1
2325	C6orf203	1
2326	C6orf204	4.254680e-01
2327	C6orf211	6.836454e-01
2328	C6orf221	3.502841e-03
2329	C6orf222	2.466439e-01
2330	C6orf223	1
2331	C6orf225	3.909835e-01
2332	C6orf226	1
2333	C6orf25	8.299355e-01
2334	C6orf26	7.292079e-01
2335	C6orf27	9.375610e-01
2336	C6orf35	6.205373e-01
2337	C6orf47	1
2338	C6orf48	2.389980e-01
2339	C6orf57	2.263034e-01
2340	C6orf58	2.962060e-01
2341	C6orf62	3.960016e-01
2342	C6orf64	4.006370e-01
2343	C6orf70	1
2344	C6orf72	8.051471e-01
2345	C6orf81	6.871638e-01
2346	C6orf89	4.193855e-01
2347	C6orf97	2.872704e-01
2348	C7	3.854093e-05
2349	C7orf10	2.105160e-01
2350	C7orf11	1
2351	C7orf16	1
2352	C7orf23	1
Done

Running MutSig 2:
Scatter job 26: processing genes 2263 - 2352
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
Cons ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
KS ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
C7   10000 perm   2 sec   (5265 perm/sec)   p_kst 2.659000e-01   p_cons 4.269000e-01   p_joint 4.127000e-01

Outputting figure to mutsig2_images.part000000000026/C7.22_2604_10000_0.2659_0.4269_0.4127.png
                gene_name: C7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 3 percent done.
C5orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
Cons ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
C5orf42   10000 perm   3 sec   (3848 perm/sec)   p_kst 1.300000e-03   p_cons 5.792000e-01   p_joint 1.570000e-02

Joint ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
Cons ci ratio: 2.375352e-02	ci left: 5.696665e-01	ci right 5.834113e-01	k: 11531	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
C5orf42   20000 perm   6 sec   (3550 perm/sec)   p_kst 1.050000e-03   p_cons 5.765500e-01   p_joint 5.800000e-03

Joint ci ratio: 3.664373e-01	ci left: 3.105244e-03	ci right 4.526846e-03	k: 113	n:30000
Cons ci ratio: 1.940101e-02	ci left: 5.707847e-01	ci right 5.820005e-01	k: 17292	n:30000
KS ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
C5orf42   30000 perm   9 sec   (3441 perm/sec)   p_kst 1.033333e-03   p_cons 5.764000e-01   p_joint 3.766667e-03

Joint ci ratio: 3.715487e-01	ci left: 2.260691e-03	ci right 3.313558e-03	k: 110	n:40000
Cons ci ratio: 1.681828e-02	ci left: 5.710640e-01	ci right 5.807749e-01	k: 23037	n:40000
KS ci ratio: 5.840230e-01	ci left: 7.993719e-04	ci right 1.476420e-03	k: 44	n:40000
C5orf42   40000 perm   12 sec   (3355 perm/sec)   p_kst 1.100000e-03   p_cons 5.759250e-01   p_joint 2.750000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 1.506824e-02	ci left: 5.707528e-01	ci right 5.794384e-01	k: 28755	n:50000
KS ci ratio: 5.433180e-01	ci left: 7.595484e-04	ci right 1.340896e-03	k: 51	n:50000
C5orf42   50000 perm   15 sec   (3304 perm/sec)   p_kst 1.020000e-03   p_cons 5.751000e-01   p_joint 2.180000e-03

Joint ci ratio: 1.742233e-01	ci left: 7.637419e-03	ci right 9.110728e-03	k: 501	n:60000
Cons ci ratio: 1.375635e-02	ci left: 5.710994e-01	ci right 5.790267e-01	k: 34504	n:60000
KS ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
C5orf42   60000 perm   18 sec   (3259 perm/sec)   p_kst 1.050000e-03   p_cons 5.750667e-01   p_joint 8.350000e-03

Joint ci ratio: 1.757445e-01	ci left: 6.436721e-03	ci right 7.690377e-03	k: 493	n:70000
Cons ci ratio: 1.278091e-02	ci left: 5.696688e-01	ci right 5.770108e-01	k: 40134	n:70000
KS ci ratio: 4.649791e-01	ci left: 7.796294e-04	ci right 1.263273e-03	k: 70	n:70000
C5orf42   70000 perm   22 sec   (3216 perm/sec)   p_kst 1.000000e-03   p_cons 5.733429e-01   p_joint 7.042857e-03

Joint ci ratio: 1.756439e-01	ci left: 5.643875e-03	ci right 6.742399e-03	k: 494	n:80000
Cons ci ratio: 1.195133e-02	ci left: 5.700765e-01	ci right 5.769431e-01	k: 45881	n:80000
KS ci ratio: 4.300500e-01	ci left: 8.152934e-04	ci right 1.272138e-03	k: 82	n:80000
C5orf42   80000 perm   25 sec   (3170 perm/sec)   p_kst 1.025000e-03   p_cons 5.735125e-01   p_joint 6.175000e-03

Joint ci ratio: 1.790072e-01	ci left: 4.825468e-03	ci right 5.784620e-03	k: 476	n:90000
Cons ci ratio: 1.126148e-02	ci left: 5.705502e-01	ci right 5.770229e-01	k: 51641	n:90000
KS ci ratio: 4.153114e-01	ci left: 7.842779e-04	ci right 1.204513e-03	k: 88	n:90000
C5orf42   90000 perm   29 sec   (3135 perm/sec)   p_kst 9.777778e-04   p_cons 5.737889e-01   p_joint 5.288889e-03

Joint ci ratio: 2.048064e-01	ci left: 3.276203e-03	ci right 4.033035e-03	k: 364	n:100000
Cons ci ratio: 1.039041e-02	ci left: 5.842812e-01	ci right 5.903938e-01	k: 58734	n:100000
KS ci ratio: 3.937778e-01	ci left: 7.956808e-04	ci right 1.194178e-03	k: 98	n:100000
C5orf42   100000 perm   32 sec   (3098 perm/sec)   p_kst 9.800000e-04   p_cons 5.873400e-01   p_joint 3.640000e-03

Joint ci ratio: 1.986557e-01	ci left: 3.176881e-03	ci right 3.886056e-03	k: 387	n:110000
Cons ci ratio: 9.893948e-03	ci left: 5.850572e-01	ci right 5.908836e-01	k: 64677	n:110000
KS ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
C5orf42   110000 perm   36 sec   (3063 perm/sec)   p_kst 9.727273e-04   p_cons 5.879727e-01   p_joint 3.518182e-03

Joint ci ratio: 2.135530e-01	ci left: 2.501046e-03	ci right 3.106712e-03	k: 335	n:120000
Cons ci ratio: 9.481661e-03	ci left: 5.847251e-01	ci right 5.903040e-01	k: 70502	n:120000
KS ci ratio: 3.685874e-01	ci left: 7.685639e-04	ci right 1.122936e-03	k: 112	n:120000
C5orf42   120000 perm   40 sec   (3029 perm/sec)   p_kst 9.333333e-04   p_cons 5.875167e-01   p_joint 2.791667e-03

Joint ci ratio: 2.029508e-01	ci left: 2.571157e-03	ci right 3.159059e-03	k: 371	n:130000
Cons ci ratio: 9.105958e-03	ci left: 5.850338e-01	ci right 5.903931e-01	k: 76403	n:130000
KS ci ratio: 3.449641e-01	ci left: 8.215049e-04	ci right 1.170602e-03	k: 128	n:130000
C5orf42   130000 perm   43 sec   (2995 perm/sec)   p_kst 9.846154e-04   p_cons 5.877154e-01   p_joint 2.853846e-03

Joint ci ratio: 2.161913e-01	ci left: 2.089637e-03	ci right 2.602751e-03	k: 327	n:140000
Cons ci ratio: 8.777591e-03	ci left: 5.849731e-01	ci right 5.901375e-01	k: 82258	n:140000
KS ci ratio: 3.372160e-01	ci left: 8.020112e-04	ci right 1.133504e-03	k: 134	n:140000
C5orf42   140000 perm   47 sec   (2962 perm/sec)   p_kst 9.571429e-04   p_cons 5.875571e-01   p_joint 2.335714e-03

Joint ci ratio: 2.098895e-01	ci left: 2.076547e-03	ci right 2.569673e-03	k: 347	n:150000
Cons ci ratio: 8.487264e-03	ci left: 5.846434e-01	ci right 5.896332e-01	k: 88071	n:150000
KS ci ratio: 3.288023e-01	ci left: 7.913085e-04	ci right 1.108493e-03	k: 141	n:150000
C5orf42   150000 perm   51 sec   (2926 perm/sec)   p_kst 9.400000e-04   p_cons 5.871400e-01   p_joint 2.313333e-03

Joint ci ratio: 1.533236e-01	ci left: 3.756716e-03	ci right 4.386463e-03	k: 650	n:160000
Cons ci ratio: 8.214203e-03	ci left: 5.849330e-01	ci right 5.897638e-01	k: 93976	n:160000
KS ci ratio: 3.022748e-01	ci left: 8.915134e-04	ci right 1.214506e-03	k: 167	n:160000
C5orf42   160000 perm   55 sec   (2894 perm/sec)   p_kst 1.043750e-03   p_cons 5.873500e-01   p_joint 4.062500e-03

Joint ci ratio: 1.484967e-01	ci left: 3.779127e-03	ci right 4.390917e-03	k: 693	n:170000
Cons ci ratio: 7.972384e-03	ci left: 5.847963e-01	ci right 5.894830e-01	k: 99814	n:170000
KS ci ratio: 2.928394e-01	ci left: 8.989490e-04	ci right 1.212585e-03	k: 178	n:170000
C5orf42   170000 perm   59 sec   (2865 perm/sec)   p_kst 1.047059e-03   p_cons 5.871412e-01   p_joint 4.076471e-03

Joint ci ratio: 1.489451e-01	ci left: 3.547749e-03	ci right 4.123968e-03	k: 689	n:180000
Cons ci ratio: 7.750113e-03	ci left: 5.847157e-01	ci right 5.892704e-01	k: 105659	n:180000
KS ci ratio: 2.865091e-01	ci left: 8.902226e-04	ci right 1.192884e-03	k: 186	n:180000
C5orf42   180000 perm   63 sec   (2836 perm/sec)   p_kst 1.033333e-03   p_cons 5.869944e-01   p_joint 3.827778e-03

Joint ci ratio: 1.277443e-01	ci left: 4.616439e-03	ci right 5.251442e-03	k: 936	n:190000
Cons ci ratio: 7.545205e-03	ci left: 5.846610e-01	ci right 5.890943e-01	k: 111507	n:190000
KS ci ratio: 2.743068e-01	ci left: 9.265564e-04	ci right 1.225844e-03	k: 203	n:190000
C5orf42   190000 perm   68 sec   (2806 perm/sec)   p_kst 1.068421e-03   p_cons 5.868789e-01   p_joint 4.926316e-03

Joint ci ratio: 1.302993e-01	ci left: 4.211369e-03	ci right 4.803134e-03	k: 900	n:200000
Cons ci ratio: 7.351792e-03	ci left: 5.848734e-01	ci right 5.891941e-01	k: 117407	n:200000
KS ci ratio: 2.684502e-01	ci left: 9.221669e-04	ci right 1.212606e-03	k: 212	n:200000
C5orf42   200000 perm   72 sec   (2780 perm/sec)   p_kst 1.060000e-03   p_cons 5.870350e-01   p_joint 4.500000e-03

Joint ci ratio: 1.320920e-01	ci left: 3.900251e-03	ci right 4.456430e-03	k: 876	n:210000
Cons ci ratio: 7.173091e-03	ci left: 5.850288e-01	ci right 5.892450e-01	k: 123299	n:210000
KS ci ratio: 2.606136e-01	ci left: 9.360557e-04	ci right 1.220862e-03	k: 225	n:210000
C5orf42   210000 perm   76 sec   (2752 perm/sec)   p_kst 1.071429e-03   p_cons 5.871381e-01   p_joint 4.171429e-03

Joint ci ratio: 1.318032e-01	ci left: 3.740528e-03	ci right 4.272671e-03	k: 880	n:220000
Cons ci ratio: 7.009971e-03	ci left: 5.849528e-01	ci right 5.890722e-01	k: 129143	n:220000
KS ci ratio: 2.577810e-01	ci left: 9.147571e-04	ci right 1.189571e-03	k: 230	n:220000
C5orf42   220000 perm   81 sec   (2725 perm/sec)   p_kst 1.045455e-03   p_cons 5.870136e-01   p_joint 4.000000e-03

Joint ci ratio: 1.311439e-01	ci left: 3.615724e-03	ci right 4.127339e-03	k: 889	n:230000
Cons ci ratio: 6.859463e-03	ci left: 5.847452e-01	ci right 5.887743e-01	k: 134955	n:230000
KS ci ratio: 2.529023e-01	ci left: 9.116113e-04	ci right 1.179480e-03	k: 239	n:230000
C5orf42   230000 perm   85 sec   (2698 perm/sec)   p_kst 1.039130e-03   p_cons 5.867609e-01   p_joint 3.865217e-03

Joint ci ratio: 1.285702e-01	ci left: 3.610196e-03	ci right 4.110237e-03	k: 925	n:240000
Cons ci ratio: 6.712824e-03	ci left: 5.849478e-01	ci right 5.888918e-01	k: 140861	n:240000
KS ci ratio: 2.487911e-01	ci left: 9.048650e-04	ci right 1.165760e-03	k: 247	n:240000
C5orf42   240000 perm   90 sec   (2673 perm/sec)   p_kst 1.029167e-03   p_cons 5.869208e-01   p_joint 3.854167e-03

Joint ci ratio: 1.321364e-01	ci left: 3.276141e-03	ci right 3.743487e-03	k: 876	n:250000
Cons ci ratio: 6.578946e-03	ci left: 5.848588e-01	ci right 5.887232e-01	k: 146698	n:250000
KS ci ratio: 2.415899e-01	ci left: 9.249860e-04	ci right 1.182806e-03	k: 262	n:250000
C5orf42   250000 perm   94 sec   (2648 perm/sec)   p_kst 1.048000e-03   p_cons 5.867920e-01   p_joint 3.504000e-03

Joint ci ratio: 1.292211e-01	ci left: 3.298955e-03	ci right 3.758376e-03	k: 916	n:260000
Cons ci ratio: 6.451696e-03	ci left: 5.848582e-01	ci right 5.886475e-01	k: 152556	n:260000
KS ci ratio: 2.358305e-01	ci left: 9.364202e-04	ci right 1.190298e-03	k: 275	n:260000
C5orf42   260000 perm   99 sec   (2624 perm/sec)   p_kst 1.057692e-03   p_cons 5.867538e-01   p_joint 3.523077e-03

Joint ci ratio: 1.307403e-01	ci left: 3.101502e-03	ci right 3.538897e-03	k: 895	n:270000
Cons ci ratio: 6.330395e-03	ci left: 5.849473e-01	ci right 5.886657e-01	k: 158438	n:270000
KS ci ratio: 2.328972e-01	ci left: 9.261411e-04	ci right 1.173659e-03	k: 282	n:270000
C5orf42   270000 perm   104 sec   (2600 perm/sec)   p_kst 1.044444e-03   p_cons 5.868074e-01   p_joint 3.314815e-03

Joint ci ratio: 1.286058e-01	ci left: 3.094400e-03	ci right 3.523125e-03	k: 925	n:280000
Cons ci ratio: 6.218252e-03	ci left: 5.848305e-01	ci right 5.884820e-01	k: 164264	n:280000
KS ci ratio: 2.281106e-01	ci left: 9.334476e-04	ci right 1.177069e-03	k: 294	n:280000
C5orf42   280000 perm   109 sec   (2575 perm/sec)   p_kst 1.050000e-03   p_cons 5.866571e-01   p_joint 3.303571e-03

Joint ci ratio: 1.266390e-01	ci left: 3.084503e-03	ci right 3.504830e-03	k: 954	n:290000
Cons ci ratio: 6.107824e-03	ci left: 5.850432e-01	ci right 5.886309e-01	k: 170183	n:290000
KS ci ratio: 2.239728e-01	ci left: 9.370434e-04	ci right 1.176556e-03	k: 305	n:290000
C5orf42   290000 perm   114 sec   (2553 perm/sec)   p_kst 1.051724e-03   p_cons 5.868379e-01   p_joint 3.289655e-03

Joint ci ratio: 1.345023e-01	ci left: 2.633393e-03	ci right 3.016312e-03	k: 846	n:300000
Cons ci ratio: 5.858840e-03	ci left: 5.969901e-01	ci right 6.005013e-01	k: 179624	n:300000
KS ci ratio: 2.190174e-01	ci left: 9.498873e-04	ci right 1.186588e-03	k: 319	n:300000
C5orf42   300000 perm   119 sec   (2529 perm/sec)   p_kst 1.063333e-03   p_cons 5.987467e-01   p_joint 2.820000e-03

Joint ci ratio: 1.318801e-01	ci left: 2.654470e-03	ci right 3.032339e-03	k: 880	n:310000
Cons ci ratio: 5.762929e-03	ci left: 5.970721e-01	ci right 6.005261e-01	k: 185628	n:310000
KS ci ratio: 2.134196e-01	ci left: 9.711164e-04	ci right 1.206112e-03	k: 336	n:310000
C5orf42   310000 perm   124 sec   (2506 perm/sec)   p_kst 1.083871e-03   p_cons 5.988000e-01   p_joint 2.838710e-03

Joint ci ratio: 1.319611e-01	ci left: 2.568488e-03	ci right 2.934359e-03	k: 879	n:320000
Cons ci ratio: 5.671837e-03	ci left: 5.971275e-01	ci right 6.005270e-01	k: 191625	n:320000
KS ci ratio: 2.115463e-01	ci left: 9.585206e-04	ci right 1.188169e-03	k: 342	n:320000
C5orf42   320000 perm   129 sec   (2484 perm/sec)   p_kst 1.068750e-03   p_cons 5.988281e-01   p_joint 2.746875e-03

Joint ci ratio: 1.334186e-01	ci left: 2.434979e-03	ci right 2.785967e-03	k: 860	n:330000
Cons ci ratio: 5.586271e-03	ci left: 5.970647e-01	ci right 6.004124e-01	k: 197584	n:330000
KS ci ratio: 2.085286e-01	ci left: 9.581837e-04	ci right 1.184058e-03	k: 352	n:330000
C5orf42   330000 perm   134 sec   (2462 perm/sec)   p_kst 1.066667e-03   p_cons 5.987394e-01   p_joint 2.606061e-03

Joint ci ratio: 1.320471e-01	ci left: 2.414544e-03	ci right 2.758727e-03	k: 878	n:340000
Cons ci ratio: 5.504228e-03	ci left: 5.970266e-01	ci right 6.003247e-01	k: 203550	n:340000
KS ci ratio: 2.067801e-01	ci left: 9.467306e-04	ci right 1.167797e-03	k: 358	n:340000
C5orf42   340000 perm   139 sec   (2440 perm/sec)   p_kst 1.052941e-03   p_cons 5.986765e-01   p_joint 2.582353e-03

Joint ci ratio: 1.222606e-01	ci left: 2.749478e-03	ci right 3.110259e-03	k: 1024	n:350000
Cons ci ratio: 5.493960e-03	ci left: 5.909643e-01	ci right 5.942228e-01	k: 207408	n:350000
KS ci ratio: 2.034081e-01	ci left: 9.522065e-04	ci right 1.170475e-03	k: 370	n:350000
C5orf42   350000 perm   145 sec   (2418 perm/sec)   p_kst 1.057143e-03   p_cons 5.925943e-01   p_joint 2.925714e-03

Joint ci ratio: 1.219677e-01	ci left: 2.686563e-03	ci right 3.038182e-03	k: 1029	n:360000
Cons ci ratio: 5.416213e-03	ci left: 5.910679e-01	ci right 5.942806e-01	k: 213363	n:360000
KS ci ratio: 2.009853e-01	ci left: 9.494905e-04	ci right 1.164226e-03	k: 379	n:360000
C5orf42   360000 perm   150 sec   (2399 perm/sec)   p_kst 1.052778e-03   p_cons 5.926750e-01   p_joint 2.858333e-03

Joint ci ratio: 1.216766e-01	ci left: 2.627050e-03	ci right 2.970000e-03	k: 1034	n:370000
Cons ci ratio: 5.343320e-03	ci left: 5.910174e-01	ci right 5.941865e-01	k: 219263	n:370000
KS ci ratio: 1.983920e-01	ci left: 9.495043e-04	ci right 1.161137e-03	k: 389	n:370000
C5orf42   370000 perm   155 sec   (2380 perm/sec)   p_kst 1.051351e-03   p_cons 5.926027e-01   p_joint 2.794595e-03

Joint ci ratio: 1.267551e-01	ci left: 2.351358e-03	ci right 2.672093e-03	k: 953	n:380000
Cons ci ratio: 5.272890e-03	ci left: 5.910068e-01	ci right 5.941339e-01	k: 225177	n:380000
KS ci ratio: 1.956519e-01	ci left: 9.520369e-04	ci right 1.160955e-03	k: 400	n:380000
C5orf42   380000 perm   161 sec   (2360 perm/sec)   p_kst 1.052632e-03   p_cons 5.925711e-01   p_joint 2.507895e-03

Joint ci ratio: 1.253189e-01	ci left: 2.345698e-03	ci right 2.661766e-03	k: 975	n:390000
Cons ci ratio: 5.204566e-03	ci left: 5.910534e-01	ci right 5.941401e-01	k: 231113	n:390000
KS ci ratio: 1.939671e-01	ci left: 9.446987e-04	ci right 1.150010e-03	k: 407	n:390000
C5orf42   390000 perm   167 sec   (2342 perm/sec)   p_kst 1.043590e-03   p_cons 5.925974e-01   p_joint 2.500000e-03

Joint ci ratio: 1.038411e-01	ci left: 3.365604e-03	ci right 3.736645e-03	k: 1419	n:400000
Cons ci ratio: 5.138192e-03	ci left: 5.911579e-01	ci right 5.942057e-01	k: 237073	n:400000
KS ci ratio: 1.918629e-01	ci left: 9.424944e-04	ci right 1.144845e-03	k: 416	n:400000
C5orf42   400000 perm   172 sec   (2322 perm/sec)   p_kst 1.040000e-03   p_cons 5.926825e-01   p_joint 3.547500e-03

Joint ci ratio: 1.032273e-01	ci left: 3.323902e-03	ci right 3.688048e-03	k: 1436	n:410000
Cons ci ratio: 5.075576e-03	ci left: 5.911356e-01	ci right 5.941460e-01	k: 242983	n:410000
KS ci ratio: 1.902733e-01	ci left: 9.357629e-04	ci right 1.134812e-03	k: 423	n:410000
C5orf42   410000 perm   178 sec   (2303 perm/sec)   p_kst 1.031707e-03   p_cons 5.926415e-01   p_joint 3.502439e-03

Joint ci ratio: 1.023422e-01	ci left: 3.302753e-03	ci right 3.661293e-03	k: 1461	n:420000
Cons ci ratio: 5.013934e-03	ci left: 5.912361e-01	ci right 5.942103e-01	k: 248944	n:420000
KS ci ratio: 1.891625e-01	ci left: 9.248217e-04	ci right 1.120263e-03	k: 428	n:420000
C5orf42   420000 perm   184 sec   (2284 perm/sec)   p_kst 1.019048e-03   p_cons 5.927238e-01   p_joint 3.478571e-03

Joint ci ratio: 1.188563e-01	ci left: 2.373248e-03	ci right 2.675379e-03	k: 1084	n:430000
Cons ci ratio: 5.019406e-03	ci left: 5.850287e-01	ci right 5.879748e-01	k: 252196	n:430000
KS ci ratio: 1.876385e-01	ci left: 9.188252e-04	ci right 1.111256e-03	k: 435	n:430000
C5orf42   430000 perm   190 sec   (2265 perm/sec)   p_kst 1.011628e-03   p_cons 5.865023e-01   p_joint 2.520930e-03

Joint ci ratio: 1.196920e-01	ci left: 2.286230e-03	ci right 2.579474e-03	k: 1069	n:440000
Cons ci ratio: 4.962180e-03	ci left: 5.850318e-01	ci right 5.879443e-01	k: 258055	n:440000
KS ci ratio: 1.867850e-01	ci left: 9.066071e-04	ci right 1.095518e-03	k: 439	n:440000
C5orf42   440000 perm   196 sec   (2247 perm/sec)   p_kst 9.977273e-04   p_cons 5.864886e-01   p_joint 2.429545e-03

Joint ci ratio: 1.181555e-01	ci left: 2.295797e-03	ci right 2.586224e-03	k: 1097	n:450000
Cons ci ratio: 4.907475e-03	ci left: 5.849750e-01	ci right 5.878550e-01	k: 263887	n:450000
KS ci ratio: 1.842885e-01	ci left: 9.118887e-04	ci right 1.099076e-03	k: 451	n:450000
C5orf42   450000 perm   202 sec   (2229 perm/sec)   p_kst 1.002222e-03   p_cons 5.864156e-01   p_joint 2.437778e-03

Joint ci ratio: 1.184836e-01	ci left: 2.233227e-03	ci right 2.516578e-03	k: 1091	n:460000
Cons ci ratio: 4.852255e-03	ci left: 5.851492e-01	ci right 5.879975e-01	k: 269824	n:460000
KS ci ratio: 1.818894e-01	ci left: 9.169566e-04	ci right 1.102464e-03	k: 463	n:460000
C5orf42   460000 perm   208 sec   (2211 perm/sec)   p_kst 1.006522e-03   p_cons 5.865739e-01   p_joint 2.371739e-03

Joint ci ratio: 1.208385e-01	ci left: 2.099015e-03	ci right 2.371009e-03	k: 1049	n:470000
Cons ci ratio: 4.802206e-03	ci left: 5.849777e-01	ci right 5.877957e-01	k: 275602	n:470000
KS ci ratio: 1.799606e-01	ci left: 9.177600e-04	ci right 1.101247e-03	k: 473	n:470000
C5orf42   470000 perm   214 sec   (2194 perm/sec)   p_kst 1.006383e-03   p_cons 5.863872e-01   p_joint 2.231915e-03

Joint ci ratio: 1.223691e-01	ci left: 2.002761e-03	ci right 2.265807e-03	k: 1023	n:480000
Cons ci ratio: 4.750775e-03	ci left: 5.851095e-01	ci right 5.878978e-01	k: 281522	n:480000
KS ci ratio: 1.786469e-01	ci left: 9.125685e-04	ci right 1.093542e-03	k: 480	n:480000
C5orf42   480000 perm   221 sec   (2176 perm/sec)   p_kst 1.000000e-03   p_cons 5.865042e-01   p_joint 2.131250e-03

Joint ci ratio: 1.092104e-01	ci left: 2.479195e-03	ci right 2.767553e-03	k: 1284	n:490000
Cons ci ratio: 4.702049e-03	ci left: 5.851237e-01	ci right 5.878835e-01	k: 287387	n:490000
KS ci ratio: 1.769988e-01	ci left: 9.114945e-04	ci right 1.090409e-03	k: 489	n:490000
C5orf42   490000 perm   227 sec   (2159 perm/sec)   p_kst 9.979592e-04   p_cons 5.865041e-01   p_joint 2.620408e-03

Joint ci ratio: 1.076701e-01	ci left: 2.501605e-03	ci right 2.788206e-03	k: 1321	n:500000
Cons ci ratio: 4.654139e-03	ci left: 5.852055e-01	ci right 5.879375e-01	k: 293286	n:500000
KS ci ratio: 1.741769e-01	ci left: 9.238588e-04	ci right 1.102005e-03	k: 505	n:500000
C5orf42   500000 perm   233 sec   (2143 perm/sec)   p_kst 1.010000e-03   p_cons 5.865720e-01   p_joint 2.642000e-03

Joint ci ratio: 1.067061e-01	ci left: 2.498351e-03	ci right 2.781856e-03	k: 1345	n:510000
Cons ci ratio: 4.609584e-03	ci left: 5.850822e-01	ci right 5.877874e-01	k: 299082	n:510000
KS ci ratio: 1.723138e-01	ci left: 9.263774e-04	ci right 1.102900e-03	k: 516	n:510000
C5orf42   510000 perm   240 sec   (2127 perm/sec)   p_kst 1.011765e-03   p_cons 5.864353e-01   p_joint 2.637255e-03

Joint ci ratio: 1.063136e-01	ci left: 2.469022e-03	ci right 2.748104e-03	k: 1355	n:520000
Cons ci ratio: 4.564419e-03	ci left: 5.851620e-01	ci right 5.878409e-01	k: 304981	n:520000
KS ci ratio: 1.701870e-01	ci left: 9.324912e-04	ci right 1.107760e-03	k: 529	n:520000
C5orf42   520000 perm   246 sec   (2111 perm/sec)   p_kst 1.017308e-03   p_cons 5.865019e-01   p_joint 2.605769e-03

Joint ci ratio: 1.048911e-01	ci left: 2.490406e-03	ci right 2.767906e-03	k: 1392	n:530000
Cons ci ratio: 4.521593e-03	ci left: 5.851275e-01	ci right 5.877810e-01	k: 310821	n:530000
KS ci ratio: 1.678278e-01	ci left: 9.420022e-04	ci right 1.116356e-03	k: 544	n:530000
C5orf42   530000 perm   253 sec   (2095 perm/sec)   p_kst 1.026415e-03   p_cons 5.864547e-01   p_joint 2.626415e-03

Joint ci ratio: 1.046304e-01	ci left: 2.456908e-03	ci right 2.729953e-03	k: 1399	n:540000
Cons ci ratio: 4.479301e-03	ci left: 5.851648e-01	ci right 5.877936e-01	k: 316699	n:540000
KS ci ratio: 1.669122e-01	ci left: 9.352032e-04	ci right 1.107260e-03	k: 550	n:540000
C5orf42   540000 perm   260 sec   (2079 perm/sec)   p_kst 1.018519e-03   p_cons 5.864796e-01   p_joint 2.590741e-03

Joint ci ratio: 1.045954e-01	ci left: 2.414005e-03	ci right 2.682187e-03	k: 1400	n:550000
Cons ci ratio: 4.438257e-03	ci left: 5.851917e-01	ci right 5.877965e-01	k: 322572	n:550000
KS ci ratio: 1.660115e-01	ci left: 9.286538e-04	ci right 1.098491e-03	k: 556	n:550000
C5orf42   550000 perm   266 sec   (2064 perm/sec)   p_kst 1.010909e-03   p_cons 5.864945e-01   p_joint 2.545455e-03

Joint ci ratio: 1.035291e-01	ci left: 2.421336e-03	ci right 2.687423e-03	k: 1429	n:560000
Cons ci ratio: 4.399260e-03	ci left: 5.851142e-01	ci right 5.876957e-01	k: 328387	n:560000
KS ci ratio: 1.643960e-01	ci left: 9.309016e-04	ci right 1.099329e-03	k: 567	n:560000
C5orf42   560000 perm   273 sec   (2049 perm/sec)   p_kst 1.012500e-03   p_cons 5.864054e-01   p_joint 2.551786e-03

Joint ci ratio: 9.529816e-02	ci left: 2.818569e-03	ci right 3.102310e-03	k: 1686	n:570000
Cons ci ratio: 4.360043e-03	ci left: 5.851764e-01	ci right 5.877350e-01	k: 334280	n:570000
KS ci ratio: 1.632506e-01	ci left: 9.280295e-04	ci right 1.094653e-03	k: 575	n:570000
C5orf42   570000 perm   280 sec   (2034 perm/sec)   p_kst 1.008772e-03   p_cons 5.864561e-01   p_joint 2.957895e-03

Joint ci ratio: 9.633701e-02	ci left: 2.709384e-03	ci right 2.985275e-03	k: 1650	n:580000
Cons ci ratio: 4.322118e-03	ci left: 5.852072e-01	ci right 5.877437e-01	k: 340156	n:580000
KS ci ratio: 1.607570e-01	ci left: 9.418059e-04	ci right 1.108071e-03	k: 593	n:580000
C5orf42   580000 perm   287 sec   (2019 perm/sec)   p_kst 1.022414e-03   p_cons 5.864759e-01   p_joint 2.844828e-03

Joint ci ratio: 9.547338e-02	ci left: 2.713090e-03	ci right 2.986743e-03	k: 1680	n:590000
Cons ci ratio: 4.284626e-03	ci left: 5.852981e-01	ci right 5.878129e-01	k: 346068	n:590000
KS ci ratio: 1.594207e-01	ci left: 9.421132e-04	ci right 1.106917e-03	k: 603	n:590000
C5orf42   590000 perm   294 sec   (2004 perm/sec)   p_kst 1.022034e-03   p_cons 5.865559e-01   p_joint 2.847458e-03

Joint ci ratio: 9.541874e-02	ci left: 2.671123e-03	ci right 2.940380e-03	k: 1682	n:600000
Cons ci ratio: 4.247757e-03	ci left: 5.854244e-01	ci right 5.879181e-01	k: 352003	n:600000
KS ci ratio: 1.578601e-01	ci left: 9.456175e-04	ci right 1.109262e-03	k: 615	n:600000
C5orf42   600000 perm   302 sec   (1990 perm/sec)   p_kst 1.025000e-03   p_cons 5.866717e-01   p_joint 2.803333e-03

Joint ci ratio: 9.488536e-02	ci left: 2.657739e-03	ci right 2.924067e-03	k: 1701	n:610000
Cons ci ratio: 4.212806e-03	ci left: 5.854335e-01	ci right 5.879066e-01	k: 357869	n:610000
KS ci ratio: 1.563444e-01	ci left: 9.490145e-04	ci right 1.111522e-03	k: 627	n:610000
C5orf42   610000 perm   309 sec   (1975 perm/sec)   p_kst 1.027869e-03   p_cons 5.866705e-01   p_joint 2.788525e-03

Joint ci ratio: 9.408710e-02	ci left: 2.660542e-03	ci right 2.924783e-03	k: 1730	n:620000
Cons ci ratio: 4.177814e-03	ci left: 5.855457e-01	ci right 5.879987e-01	k: 363799	n:620000
KS ci ratio: 1.548715e-01	ci left: 9.523091e-04	ci right 1.113702e-03	k: 639	n:620000
C5orf42   620000 perm   316 sec   (1962 perm/sec)   p_kst 1.030645e-03   p_cons 5.867726e-01   p_joint 2.790323e-03

Joint ci ratio: 9.494553e-02	ci left: 2.570262e-03	ci right 2.827996e-03	k: 1699	n:630000
Cons ci ratio: 4.142364e-03	ci left: 5.858084e-01	ci right 5.882416e-01	k: 369826	n:630000
KS ci ratio: 1.539128e-01	ci left: 9.494008e-04	ci right 1.109213e-03	k: 647	n:630000
C5orf42   630000 perm   323 sec   (1948 perm/sec)   p_kst 1.026984e-03   p_cons 5.870254e-01   p_joint 2.696825e-03

Joint ci ratio: 9.299333e-02	ci left: 2.639962e-03	ci right 2.898946e-03	k: 1771	n:640000
Cons ci ratio: 4.006937e-03	ci left: 5.980654e-01	ci right 6.004681e-01	k: 383531	n:640000
KS ci ratio: 1.529717e-01	ci left: 9.465864e-04	ci right 1.104861e-03	k: 655	n:640000
C5orf42   640000 perm   331 sec   (1934 perm/sec)   p_kst 1.023438e-03   p_cons 5.992672e-01   p_joint 2.767188e-03

Joint ci ratio: 9.226719e-02	ci left: 2.641427e-03	ci right 2.898421e-03	k: 1799	n:650000
Cons ci ratio: 3.976335e-03	ci left: 5.980336e-01	ci right 6.004178e-01	k: 389497	n:650000
KS ci ratio: 1.525082e-01	ci left: 9.379419e-04	ci right 1.094253e-03	k: 659	n:650000
C5orf42   650000 perm   338 sec   (1921 perm/sec)   p_kst 1.013846e-03   p_cons 5.992262e-01   p_joint 2.767692e-03

Joint ci ratio: 9.135756e-02	ci left: 2.654699e-03	ci right 2.910302e-03	k: 1835	n:660000
Cons ci ratio: 3.945714e-03	ci left: 5.980893e-01	ci right 6.004553e-01	k: 395520	n:660000
KS ci ratio: 1.510277e-01	ci left: 9.426798e-04	ci right 1.098117e-03	k: 672	n:660000
C5orf42   660000 perm   346 sec   (1908 perm/sec)   p_kst 1.018182e-03   p_cons 5.992727e-01   p_joint 2.780303e-03

Joint ci ratio: 9.062005e-02	ci left: 2.658834e-03	ci right 2.912660e-03	k: 1865	n:670000
Cons ci ratio: 3.915728e-03	ci left: 5.981508e-01	ci right 6.004991e-01	k: 401548	n:670000
KS ci ratio: 1.494805e-01	ci left: 9.487201e-04	ci right 1.103408e-03	k: 686	n:670000
C5orf42   670000 perm   354 sec   (1895 perm/sec)   p_kst 1.023881e-03   p_cons 5.993254e-01   p_joint 2.783582e-03

Joint ci ratio: 9.126168e-02	ci left: 2.582363e-03	ci right 2.830727e-03	k: 1839	n:680000
Cons ci ratio: 3.886119e-03	ci left: 5.982474e-01	ci right 6.005782e-01	k: 407601	n:680000
KS ci ratio: 1.491560e-01	ci left: 9.390149e-04	ci right 1.091758e-03	k: 689	n:680000
C5orf42   680000 perm   361 sec   (1883 perm/sec)   p_kst 1.013235e-03   p_cons 5.994132e-01   p_joint 2.704412e-03

Joint ci ratio: 9.148810e-02	ci left: 2.532189e-03	ci right 2.776364e-03	k: 1830	n:690000
Cons ci ratio: 3.856809e-03	ci left: 5.983862e-01	ci right 6.006999e-01	k: 413685	n:690000
KS ci ratio: 1.481928e-01	ci left: 9.379642e-04	ci right 1.089464e-03	k: 698	n:690000
C5orf42   690000 perm   369 sec   (1870 perm/sec)   p_kst 1.011594e-03   p_cons 5.995435e-01   p_joint 2.652174e-03

Joint ci ratio: 9.181722e-02	ci left: 2.477866e-03	ci right 2.717708e-03	k: 1817	n:700000
Cons ci ratio: 3.829736e-03	ci left: 5.983224e-01	ci right 6.006196e-01	k: 419630	n:700000
KS ci ratio: 1.478766e-01	ci left: 9.286913e-04	ci right 1.078345e-03	k: 701	n:700000
C5orf42   700000 perm   377 sec   (1857 perm/sec)   p_kst 1.001429e-03   p_cons 5.994714e-01   p_joint 2.595714e-03

Joint ci ratio: 9.119241e-02	ci left: 2.477372e-03	ci right 2.715448e-03	k: 1842	n:710000
Cons ci ratio: 3.803772e-03	ci left: 5.981914e-01	ci right 6.004725e-01	k: 425526	n:710000
KS ci ratio: 1.467313e-01	ci left: 9.305332e-04	ci right 1.079220e-03	k: 712	n:710000
C5orf42   710000 perm   385 sec   (1845 perm/sec)   p_kst 1.002817e-03   p_cons 5.993324e-01   p_joint 2.594366e-03

Joint ci ratio: 9.048311e-02	ci left: 2.482327e-03	ci right 2.718925e-03	k: 1871	n:720000
Cons ci ratio: 3.776766e-03	ci left: 5.982629e-01	ci right 6.005280e-01	k: 431565	n:720000
KS ci ratio: 1.454114e-01	ci left: 9.350049e-04	ci right 1.082946e-03	k: 725	n:720000
C5orf42   720000 perm   393 sec   (1833 perm/sec)   p_kst 1.006944e-03   p_cons 5.993958e-01   p_joint 2.598611e-03

Joint ci ratio: 8.609934e-02	ci left: 2.709565e-03	ci right 2.954681e-03	k: 2066	n:730000
Cons ci ratio: 3.750455e-03	ci left: 5.983159e-01	ci right 6.005655e-01	k: 437592	n:730000
KS ci ratio: 1.444202e-01	ci left: 9.353986e-04	ci right 1.082306e-03	k: 735	n:730000
C5orf42   730000 perm   401 sec   (1821 perm/sec)   p_kst 1.006849e-03   p_cons 5.994411e-01   p_joint 2.830137e-03

Joint ci ratio: 8.562458e-02	ci left: 2.703362e-03	ci right 2.946502e-03	k: 2089	n:740000
Cons ci ratio: 3.725084e-03	ci left: 5.983163e-01	ci right 6.005505e-01	k: 443581	n:740000
KS ci ratio: 1.431611e-01	ci left: 9.396938e-04	ci right 1.085879e-03	k: 748	n:740000
C5orf42   740000 perm   409 sec   (1809 perm/sec)   p_kst 1.010811e-03   p_cons 5.994338e-01   p_joint 2.822973e-03

Joint ci ratio: 8.505674e-02	ci left: 2.703854e-03	ci right 2.945345e-03	k: 2117	n:750000
Cons ci ratio: 3.699585e-03	ci left: 5.983993e-01	ci right 6.006186e-01	k: 449632	n:750000
KS ci ratio: 1.420277e-01	ci left: 9.425938e-04	ci right 1.087971e-03	k: 760	n:750000
C5orf42   750000 perm   417 sec   (1798 perm/sec)   p_kst 1.013333e-03   p_cons 5.995093e-01   p_joint 2.822667e-03

Joint ci ratio: 8.461875e-02	ci left: 2.696610e-03	ci right 2.936152e-03	k: 2139	n:760000
Cons ci ratio: 3.675418e-03	ci left: 5.983736e-01	ci right 6.005782e-01	k: 455602	n:760000
KS ci ratio: 1.410121e-01	ci left: 9.441525e-04	ci right 1.088642e-03	k: 771	n:760000
C5orf42   760000 perm   425 sec   (1786 perm/sec)   p_kst 1.014474e-03   p_cons 5.994763e-01   p_joint 2.814474e-03

Joint ci ratio: 8.465998e-02	ci left: 2.659044e-03	ci right 2.895370e-03	k: 2137	n:770000
Cons ci ratio: 3.651452e-03	ci left: 5.983837e-01	ci right 6.005740e-01	k: 461599	n:770000
KS ci ratio: 1.403774e-01	ci left: 9.406616e-04	ci right 1.083914e-03	k: 778	n:770000
C5orf42   770000 perm   434 sec   (1776 perm/sec)   p_kst 1.010390e-03   p_cons 5.994792e-01   p_joint 2.775325e-03

Joint ci ratio: 8.450311e-02	ci left: 2.634992e-03	ci right 2.868725e-03	k: 2145	n:780000
Cons ci ratio: 3.627919e-03	ci left: 5.983975e-01	ci right 6.005736e-01	k: 467599	n:780000
KS ci ratio: 1.395736e-01	ci left: 9.397362e-04	ci right 1.081960e-03	k: 787	n:780000
C5orf42   780000 perm   442 sec   (1765 perm/sec)   p_kst 1.008974e-03   p_cons 5.994859e-01   p_joint 2.750000e-03

Joint ci ratio: 8.500250e-02	ci left: 2.570659e-03	ci right 2.800100e-03	k: 2120	n:790000
Cons ci ratio: 3.604417e-03	ci left: 5.984666e-01	ci right 6.006289e-01	k: 473643	n:790000
KS ci ratio: 1.387834e-01	ci left: 9.388365e-04	ci right 1.080053e-03	k: 796	n:790000
C5orf42   790000 perm   450 sec   (1754 perm/sec)   p_kst 1.007595e-03   p_cons 5.995481e-01   p_joint 2.683544e-03

Joint ci ratio: 8.462472e-02	ci left: 2.561772e-03	ci right 2.789353e-03	k: 2139	n:800000
Cons ci ratio: 3.581413e-03	ci left: 5.985278e-01	ci right 6.006765e-01	k: 479682	n:800000
KS ci ratio: 1.387843e-01	ci left: 9.271006e-04	ci right 1.066553e-03	k: 796	n:800000
C5orf42   800000 perm   459 sec   (1743 perm/sec)   p_kst 9.950000e-04   p_cons 5.996025e-01   p_joint 2.673750e-03

Joint ci ratio: 8.526772e-02	ci left: 2.491474e-03	ci right 2.714576e-03	k: 2107	n:810000
Cons ci ratio: 3.558871e-03	ci left: 5.985839e-01	ci right 6.007191e-01	k: 485718	n:810000
KS ci ratio: 1.382651e-01	ci left: 9.228055e-04	ci right 1.061050e-03	k: 802	n:810000
C5orf42   810000 perm   468 sec   (1732 perm/sec)   p_kst 9.901235e-04   p_cons 5.996519e-01   p_joint 2.601235e-03

Joint ci ratio: 8.582187e-02	ci left: 2.428865e-03	ci right 2.647844e-03	k: 2080	n:820000
Cons ci ratio: 3.536525e-03	ci left: 5.986691e-01	ci right 6.007912e-01	k: 491779	n:820000
KS ci ratio: 1.364081e-01	ci left: 9.374597e-04	ci right 1.075860e-03	k: 824	n:820000
C5orf42   820000 perm   476 sec   (1721 perm/sec)   p_kst 1.004878e-03   p_cons 5.997305e-01   p_joint 2.536585e-03

Joint ci ratio: 8.516920e-02	ci left: 2.437332e-03	ci right 2.655320e-03	k: 2112	n:830000
Cons ci ratio: 3.514780e-03	ci left: 5.987269e-01	ci right 6.008362e-01	k: 497819	n:830000
KS ci ratio: 1.350235e-01	ci left: 9.459518e-04	ci right 1.084075e-03	k: 841	n:830000
C5orf42   830000 perm   485 sec   (1711 perm/sec)   p_kst 1.013253e-03   p_cons 5.997819e-01   p_joint 2.544578e-03

Joint ci ratio: 8.447198e-02	ci left: 2.449099e-03	ci right 2.666259e-03	k: 2147	n:840000
Cons ci ratio: 3.493994e-03	ci left: 5.987061e-01	ci right 6.008028e-01	k: 503794	n:840000
KS ci ratio: 1.336802e-01	ci left: 9.542486e-04	ci right 1.092087e-03	k: 858	n:840000
C5orf42   840000 perm   494 sec   (1700 perm/sec)   p_kst 1.021429e-03   p_cons 5.997548e-01   p_joint 2.555952e-03

Joint ci ratio: 8.471081e-02	ci left: 2.406465e-03	ci right 2.620477e-03	k: 2135	n:850000
Cons ci ratio: 3.473708e-03	ci left: 5.986669e-01	ci right 6.007512e-01	k: 509753	n:850000
KS ci ratio: 1.327560e-01	ci left: 9.566694e-04	ci right 1.093826e-03	k: 870	n:850000
C5orf42   850000 perm   503 sec   (1690 perm/sec)   p_kst 1.023529e-03   p_cons 5.997094e-01   p_joint 2.511765e-03

Joint ci ratio: 7.895386e-02	ci left: 2.745267e-03	ci right 2.972056e-03	k: 2457	n:860000
Cons ci ratio: 3.453696e-03	ci left: 5.986391e-01	ci right 6.007114e-01	k: 515721	n:860000
KS ci ratio: 1.319255e-01	ci left: 9.579126e-04	ci right 1.094321e-03	k: 881	n:860000
C5orf42   860000 perm   512 sec   (1680 perm/sec)   p_kst 1.024419e-03   p_cons 5.996756e-01   p_joint 2.856977e-03

Joint ci ratio: 7.858729e-02	ci left: 2.739628e-03	ci right 2.964852e-03	k: 2480	n:870000
Cons ci ratio: 3.433591e-03	ci left: 5.986730e-01	ci right 6.007332e-01	k: 521742	n:870000
KS ci ratio: 1.312576e-01	ci left: 9.569064e-04	ci right 1.092428e-03	k: 890	n:870000
C5orf42   870000 perm   521 sec   (1670 perm/sec)   p_kst 1.022989e-03   p_cons 5.997034e-01   p_joint 2.850575e-03

Joint ci ratio: 7.814757e-02	ci left: 2.739690e-03	ci right 2.963602e-03	k: 2508	n:880000
Cons ci ratio: 3.413550e-03	ci left: 5.987459e-01	ci right 6.007943e-01	k: 527798	n:880000
KS ci ratio: 1.301661e-01	ci left: 9.625207e-04	ci right 1.097616e-03	k: 905	n:880000
C5orf42   880000 perm   530 sec   (1661 perm/sec)   p_kst 1.028409e-03   p_cons 5.997705e-01   p_joint 2.850000e-03

Joint ci ratio: 7.768445e-02	ci left: 2.741959e-03	ci right 2.964667e-03	k: 2538	n:890000
Cons ci ratio: 3.394372e-03	ci left: 5.987441e-01	ci right 6.007810e-01	k: 533789	n:890000
KS ci ratio: 1.293830e-01	ci left: 9.636642e-04	ci right 1.098044e-03	k: 916	n:890000
C5orf42   890000 perm   539 sec   (1651 perm/sec)   p_kst 1.029213e-03   p_cons 5.997629e-01   p_joint 2.851685e-03

Joint ci ratio: 7.719934e-02	ci left: 2.746360e-03	ci right 2.967970e-03	k: 2570	n:900000
Cons ci ratio: 3.375388e-03	ci left: 5.987602e-01	ci right 6.007858e-01	k: 539796	n:900000
KS ci ratio: 1.284063e-01	ci left: 9.680109e-04	ci right 1.101900e-03	k: 930	n:900000
C5orf42   900000 perm   548 sec   (1641 perm/sec)   p_kst 1.033333e-03   p_cons 5.997733e-01   p_joint 2.855556e-03

Joint ci ratio: 7.143903e-02	ci left: 3.179963e-03	ci right 3.416623e-03	k: 3000	n:910000
Cons ci ratio: 3.356397e-03	ci left: 5.988222e-01	ci right 6.008365e-01	k: 545845	n:910000
KS ci ratio: 1.275189e-01	ci left: 9.712020e-04	ci right 1.104534e-03	k: 943	n:910000
C5orf42   910000 perm   558 sec   (1632 perm/sec)   p_kst 1.036264e-03   p_cons 5.998297e-01   p_joint 3.296703e-03

Joint ci ratio: 7.184981e-02	ci left: 3.109100e-03	ci right 3.341871e-03	k: 2966	n:920000
Cons ci ratio: 3.338509e-03	ci left: 5.987697e-01	ci right 6.007731e-01	k: 551790	n:920000
KS ci ratio: 1.267823e-01	ci left: 9.722217e-04	ci right 1.104865e-03	k: 954	n:920000
C5orf42   920000 perm   567 sec   (1622 perm/sec)   p_kst 1.036957e-03   p_cons 5.997717e-01   p_joint 3.223913e-03

Joint ci ratio: 7.150135e-02	ci left: 3.106292e-03	ci right 3.337679e-03	k: 2995	n:930000
Cons ci ratio: 3.321008e-03	ci left: 5.987034e-01	ci right 6.006960e-01	k: 557721	n:930000
KS ci ratio: 1.262547e-01	ci left: 9.700975e-04	ci right 1.101859e-03	k: 962	n:930000
C5orf42   930000 perm   577 sec   (1613 perm/sec)   p_kst 1.034409e-03   p_cons 5.997000e-01   p_joint 3.220430e-03

Joint ci ratio: 7.164667e-02	ci left: 3.060707e-03	ci right 3.289180e-03	k: 2983	n:940000
Cons ci ratio: 3.302761e-03	ci left: 5.987864e-01	ci right 6.007683e-01	k: 563791	n:940000
KS ci ratio: 1.258636e-01	ci left: 9.659589e-04	ci right 1.096722e-03	k: 968	n:940000
C5orf42   940000 perm   586 sec   (1604 perm/sec)   p_kst 1.029787e-03   p_cons 5.997777e-01   p_joint 3.173404e-03

Joint ci ratio: 7.131301e-02	ci left: 3.057435e-03	ci right 3.284558e-03	k: 3011	n:950000
Cons ci ratio: 3.284733e-03	ci left: 5.988793e-01	ci right 6.008507e-01	k: 569872	n:950000
KS ci ratio: 1.252832e-01	ci left: 9.649670e-04	ci right 1.094948e-03	k: 977	n:950000
C5orf42   950000 perm   596 sec   (1595 perm/sec)   p_kst 1.028421e-03   p_cons 5.998653e-01   p_joint 3.169474e-03

Joint ci ratio: 7.097227e-02	ci left: 3.055258e-03	ci right 3.281090e-03	k: 3040	n:960000
Cons ci ratio: 3.267542e-03	ci left: 5.988900e-01	ci right 6.008511e-01	k: 575876	n:960000
KS ci ratio: 1.247740e-01	ci left: 9.629879e-04	ci right 1.092137e-03	k: 985	n:960000
C5orf42   960000 perm   606 sec   (1585 perm/sec)   p_kst 1.026042e-03   p_cons 5.998708e-01   p_joint 3.166667e-03

Joint ci ratio: 7.075205e-02	ci left: 3.043000e-03	ci right 3.267199e-03	k: 3059	n:970000
Cons ci ratio: 3.250898e-03	ci left: 5.988593e-01	ci right 6.008103e-01	k: 581840	n:970000
KS ci ratio: 1.242711e-01	ci left: 9.610506e-04	ci right 1.089382e-03	k: 993	n:970000
C5orf42   970000 perm   615 sec   (1576 perm/sec)   p_kst 1.023711e-03   p_cons 5.998351e-01   p_joint 3.153608e-03

Joint ci ratio: 7.153120e-02	ci left: 2.945795e-03	ci right 3.165322e-03	k: 2993	n:980000
Cons ci ratio: 3.234498e-03	ci left: 5.988302e-01	ci right 6.007712e-01	k: 587805	n:980000
KS ci ratio: 1.236507e-01	ci left: 9.611316e-04	ci right 1.088786e-03	k: 1003	n:980000
C5orf42   980000 perm   625 sec   (1568 perm/sec)   p_kst 1.023469e-03   p_cons 5.998010e-01   p_joint 3.054082e-03

Joint ci ratio: 7.293853e-02	ci left: 2.802960e-03	ci right 3.016126e-03	k: 2879	n:990000
Cons ci ratio: 3.218020e-03	ci left: 5.988503e-01	ci right 6.007815e-01	k: 593818	n:990000
KS ci ratio: 1.228576e-01	ci left: 9.641498e-04	ci right 1.091324e-03	k: 1016	n:990000
C5orf42   990000 perm   635 sec   (1559 perm/sec)   p_kst 1.026263e-03   p_cons 5.998162e-01   p_joint 2.908081e-03

Joint ci ratio: 7.286351e-02	ci left: 2.780820e-03	ci right 2.992076e-03	k: 2885	n:1000000
Cons ci ratio: 3.201864e-03	ci left: 5.988590e-01	ci right 6.007805e-01	k: 599820	n:1000000
KS ci ratio: 1.221985e-01	ci left: 9.651712e-04	ci right 1.091748e-03	k: 1027	n:1000000
C5orf42   1000000 perm   645 sec   (1550 perm/sec)   p_kst 1.027000e-03   p_cons 5.998200e-01   p_joint 2.885000e-03

Joint ci ratio: 7.323448e-02	ci left: 2.725096e-03	ci right 2.933217e-03	k: 2856	n:1010000
Cons ci ratio: 3.186665e-03	ci left: 5.987595e-01	ci right 6.006716e-01	k: 605713	n:1010000
KS ci ratio: 1.216085e-01	ci left: 9.652141e-04	ci right 1.091141e-03	k: 1037	n:1010000
C5orf42   1010000 perm   655 sec   (1541 perm/sec)   p_kst 1.026733e-03   p_cons 5.997158e-01   p_joint 2.827723e-03

Joint ci ratio: 7.353291e-02	ci left: 2.676242e-03	ci right 2.881500e-03	k: 2833	n:1020000
Cons ci ratio: 3.170702e-03	ci left: 5.988102e-01	ci right 6.007128e-01	k: 611757	n:1020000
KS ci ratio: 1.210848e-01	ci left: 9.643069e-04	ci right 1.089535e-03	k: 1046	n:1020000
C5orf42   1020000 perm   665 sec   (1533 perm/sec)   p_kst 1.025490e-03   p_cons 5.997618e-01   p_joint 2.777451e-03

Joint ci ratio: 7.312110e-02	ci left: 2.680757e-03	ci right 2.885162e-03	k: 2865	n:1030000
Cons ci ratio: 3.155283e-03	ci left: 5.988132e-01	ci right 6.007066e-01	k: 617753	n:1030000
KS ci ratio: 1.203967e-01	ci left: 9.662434e-04	ci right 1.090959e-03	k: 1058	n:1030000
C5orf42   1030000 perm   676 sec   (1524 perm/sec)   p_kst 1.027184e-03   p_cons 5.997602e-01   p_joint 2.781553e-03

Joint ci ratio: 7.298177e-02	ci left: 2.665364e-03	ci right 2.868191e-03	k: 2876	n:1040000
Cons ci ratio: 3.140024e-03	ci left: 5.988259e-01	ci right 6.007101e-01	k: 623759	n:1040000
KS ci ratio: 1.196084e-01	ci left: 9.700101e-04	ci right 1.094334e-03	k: 1072	n:1040000
C5orf42   1040000 perm   686 sec   (1516 perm/sec)   p_kst 1.030769e-03   p_cons 5.997683e-01   p_joint 2.765385e-03

Joint ci ratio: 7.378426e-02	ci left: 2.582011e-03	ci right 2.780748e-03	k: 2814	n:1050000
Cons ci ratio: 3.124693e-03	ci left: 5.988831e-01	ci right 6.007583e-01	k: 629812	n:1050000
KS ci ratio: 1.191652e-01	ci left: 9.681634e-04	ci right 1.091758e-03	k: 1080	n:1050000
C5orf42   1050000 perm   696 sec   (1508 perm/sec)   p_kst 1.028571e-03   p_cons 5.998210e-01   p_joint 2.680000e-03

Joint ci ratio: 7.340703e-02	ci left: 2.584508e-03	ci right 2.782376e-03	k: 2843	n:1060000
Cons ci ratio: 3.110189e-03	ci left: 5.988458e-01	ci right 6.007121e-01	k: 635766	n:1060000
KS ci ratio: 1.185634e-01	ci left: 9.690986e-04	ci right 1.092145e-03	k: 1091	n:1060000
C5orf42   1060000 perm   707 sec   (1500 perm/sec)   p_kst 1.029245e-03   p_cons 5.997792e-01   p_joint 2.682075e-03

Joint ci ratio: 7.307380e-02	ci left: 2.584207e-03	ci right 2.781117e-03	k: 2869	n:1070000
Cons ci ratio: 3.095729e-03	ci left: 5.988335e-01	ci right 6.006911e-01	k: 641746	n:1070000
KS ci ratio: 1.179707e-01	ci left: 9.700179e-04	ci right 1.092522e-03	k: 1102	n:1070000
C5orf42   1070000 perm   717 sec   (1492 perm/sec)   p_kst 1.029907e-03   p_cons 5.997626e-01   p_joint 2.681308e-03

Joint ci ratio: 7.282074e-02	ci left: 2.578460e-03	ci right 2.774222e-03	k: 2889	n:1080000
Cons ci ratio: 3.081539e-03	ci left: 5.988104e-01	ci right 6.006594e-01	k: 647714	n:1080000
KS ci ratio: 1.175453e-01	ci left: 9.682254e-04	ci right 1.090032e-03	k: 1110	n:1080000
C5orf42   1080000 perm   728 sec   (1484 perm/sec)   p_kst 1.027778e-03   p_cons 5.997352e-01   p_joint 2.675000e-03

Joint ci ratio: 7.308837e-02	ci left: 2.535888e-03	ci right 2.729156e-03	k: 2868	n:1090000
Cons ci ratio: 3.067420e-03	ci left: 5.988070e-01	ci right 6.006475e-01	k: 653703	n:1090000
KS ci ratio: 1.167076e-01	ci left: 9.735916e-04	ci right 1.095140e-03	k: 1126	n:1090000
C5orf42   1090000 perm   738 sec   (1476 perm/sec)   p_kst 1.033028e-03   p_cons 5.997275e-01   p_joint 2.631193e-03

Joint ci ratio: 7.278465e-02	ci left: 2.534254e-03	ci right 2.726561e-03	k: 2892	n:1100000
Cons ci ratio: 3.053383e-03	ci left: 5.988210e-01	ci right 6.006531e-01	k: 659711	n:1100000
KS ci ratio: 1.162957e-01	ci left: 9.718015e-04	ci right 1.092669e-03	k: 1134	n:1100000
C5orf42   1100000 perm   749 sec   (1469 perm/sec)   p_kst 1.030909e-03   p_cons 5.997373e-01   p_joint 2.629091e-03

Joint ci ratio: 7.244734e-02	ci left: 2.535306e-03	ci right 2.726763e-03	k: 2919	n:1110000
Cons ci ratio: 3.039504e-03	ci left: 5.988401e-01	ci right 6.006639e-01	k: 665725	n:1110000
KS ci ratio: 1.154843e-01	ci left: 9.770433e-04	ci right 1.097657e-03	k: 1150	n:1110000
C5orf42   1110000 perm   760 sec   (1461 perm/sec)   p_kst 1.036036e-03   p_cons 5.997523e-01   p_joint 2.629730e-03

Joint ci ratio: 7.212695e-02	ci left: 2.535464e-03	ci right 2.726051e-03	k: 2945	n:1120000
Cons ci ratio: 3.025732e-03	ci left: 5.988714e-01	ci right 6.006870e-01	k: 671753	n:1120000
KS ci ratio: 1.149859e-01	ci left: 9.769909e-04	ci right 1.097042e-03	k: 1160	n:1120000
C5orf42   1120000 perm   770 sec   (1454 perm/sec)   p_kst 1.035714e-03   p_cons 5.997795e-01   p_joint 2.629464e-03

Joint ci ratio: 7.182289e-02	ci left: 2.534752e-03	ci right 2.724449e-03	k: 2970	n:1130000
Cons ci ratio: 3.012313e-03	ci left: 5.988756e-01	ci right 6.006832e-01	k: 677751	n:1130000
KS ci ratio: 1.145429e-01	ci left: 9.760809e-04	ci right 1.095527e-03	k: 1169	n:1130000
C5orf42   1130000 perm   781 sec   (1446 perm/sec)   p_kst 1.034513e-03   p_cons 5.997796e-01   p_joint 2.628319e-03

Joint ci ratio: 7.247475e-02	ci left: 2.466862e-03	ci right 2.653224e-03	k: 2917	n:1140000
Cons ci ratio: 2.998666e-03	ci left: 5.989447e-01	ci right 6.007443e-01	k: 683823	n:1140000
KS ci ratio: 1.141049e-01	ci left: 9.751878e-04	ci right 1.094037e-03	k: 1178	n:1140000
C5orf42   1140000 perm   792 sec   (1439 perm/sec)   p_kst 1.033333e-03   p_cons 5.998447e-01   p_joint 2.558772e-03

Joint ci ratio: 7.329859e-02	ci left: 2.389916e-03	ci right 2.572604e-03	k: 2852	n:1150000
Cons ci ratio: 2.985505e-03	ci left: 5.989639e-01	ci right 6.007556e-01	k: 689839	n:1150000
KS ci ratio: 1.136241e-01	ci left: 9.751559e-04	ci right 1.093467e-03	k: 1188	n:1150000
C5orf42   1150000 perm   803 sec   (1432 perm/sec)   p_kst 1.033043e-03   p_cons 5.998600e-01   p_joint 2.480000e-03

Joint ci ratio: 7.304317e-02	ci left: 2.386239e-03	ci right 2.567984e-03	k: 2872	n:1160000
Cons ci ratio: 2.972532e-03	ci left: 5.989802e-01	ci right 6.007641e-01	k: 695852	n:1160000
KS ci ratio: 1.131493e-01	ci left: 9.751256e-04	ci right 1.092906e-03	k: 1198	n:1160000
C5orf42   1160000 perm   814 sec   (1425 perm/sec)   p_kst 1.032759e-03   p_cons 5.998724e-01   p_joint 2.475862e-03

Joint ci ratio: 7.281563e-02	ci left: 2.380947e-03	ci right 2.561701e-03	k: 2890	n:1170000
Cons ci ratio: 2.959515e-03	ci left: 5.990304e-01	ci right 6.008067e-01	k: 701905	n:1170000
KS ci ratio: 1.128206e-01	ci left: 9.726049e-04	ci right 1.089717e-03	k: 1205	n:1170000
C5orf42   1170000 perm   825 sec   (1418 perm/sec)   p_kst 1.029915e-03   p_cons 5.999188e-01   p_joint 2.470085e-03

Joint ci ratio: 7.254023e-02	ci left: 2.379075e-03	ci right 2.558974e-03	k: 2912	n:1180000
Cons ci ratio: 2.946892e-03	ci left: 5.990434e-01	ci right 6.008121e-01	k: 707915	n:1180000
KS ci ratio: 1.124020e-01	ci left: 9.717748e-04	ci right 1.088324e-03	k: 1214	n:1180000
C5orf42   1180000 perm   836 sec   (1411 perm/sec)   p_kst 1.028814e-03   p_cons 5.999280e-01   p_joint 2.467797e-03

Joint ci ratio: 7.305820e-02	ci left: 2.325254e-03	ci right 2.502392e-03	k: 2871	n:1190000
Cons ci ratio: 2.934506e-03	ci left: 5.990435e-01	ci right 6.008048e-01	k: 713910	n:1190000
KS ci ratio: 1.118509e-01	ci left: 9.734099e-04	ci right 1.089545e-03	k: 1226	n:1190000
C5orf42   1190000 perm   847 sec   (1404 perm/sec)   p_kst 1.030252e-03   p_cons 5.999244e-01   p_joint 2.412605e-03

Joint ci ratio: 7.265432e-02	ci left: 2.332058e-03	ci right 2.508691e-03	k: 2903	n:1200000
Cons ci ratio: 2.922772e-03	ci left: 5.989619e-01	ci right 6.007159e-01	k: 719807	n:1200000
KS ci ratio: 1.113079e-01	ci left: 9.750191e-04	ci right 1.090744e-03	k: 1238	n:1200000
C5orf42   1200000 perm   859 sec   (1397 perm/sec)   p_kst 1.031667e-03   p_cons 5.998392e-01   p_joint 2.419167e-03

Joint ci ratio: 7.225707e-02	ci left: 2.338752e-03	ci right 2.514883e-03	k: 2935	n:1210000
Cons ci ratio: 2.910636e-03	ci left: 5.989710e-01	ci right 6.007178e-01	k: 725812	n:1210000
KS ci ratio: 1.107284e-01	ci left: 9.774066e-04	ci right 1.092772e-03	k: 1251	n:1210000
C5orf42   1210000 perm   871 sec   (1390 perm/sec)   p_kst 1.033884e-03   p_cons 5.998446e-01   p_joint 2.425620e-03

Joint ci ratio: 6.819789e-02	ci left: 2.608693e-03	ci right 2.793680e-03	k: 3294	n:1220000
Cons ci ratio: 2.898195e-03	ci left: 5.990554e-01	ci right 6.007949e-01	k: 731909	n:1220000
KS ci ratio: 1.103326e-01	ci left: 9.765682e-04	ci right 1.091396e-03	k: 1260	n:1220000
C5orf42   1220000 perm   882 sec   (1383 perm/sec)   p_kst 1.032787e-03   p_cons 5.999254e-01   p_joint 2.700000e-03

Joint ci ratio: 6.790993e-02	ci left: 2.609861e-03	ci right 2.794119e-03	k: 3322	n:1230000
Cons ci ratio: 2.886777e-03	ci left: 5.989945e-01	ci right 6.007270e-01	k: 737829	n:1230000
KS ci ratio: 1.098977e-01	ci left: 9.765347e-04	ci right 1.090876e-03	k: 1270	n:1230000
C5orf42   1230000 perm   894 sec   (1376 perm/sec)   p_kst 1.032520e-03   p_cons 5.998610e-01   p_joint 2.700813e-03

Joint ci ratio: 6.756496e-02	ci left: 2.615769e-03	ci right 2.799469e-03	k: 3356	n:1240000
Cons ci ratio: 2.874846e-03	ci left: 5.990427e-01	ci right 6.007681e-01	k: 743883	n:1240000
KS ci ratio: 1.091697e-01	ci left: 9.819937e-04	ci right 1.096164e-03	k: 1287	n:1240000
C5orf42   1240000 perm   905 sec   (1370 perm/sec)   p_kst 1.037903e-03   p_cons 5.999056e-01   p_joint 2.706452e-03

Joint ci ratio: 6.758589e-02	ci left: 2.593269e-03	ci right 2.775448e-03	k: 3354	n:1250000
Cons ci ratio: 2.863491e-03	ci left: 5.990181e-01	ci right 6.007366e-01	k: 749847	n:1250000
KS ci ratio: 1.087065e-01	ci left: 9.826980e-04	ci right 1.096434e-03	k: 1298	n:1250000
C5orf42   1250000 perm   917 sec   (1363 perm/sec)   p_kst 1.038400e-03   p_cons 5.998776e-01   p_joint 2.683200e-03

Joint ci ratio: 6.949199e-02	ci left: 2.431491e-03	ci right 2.607316e-03	k: 3173	n:1260000
Cons ci ratio: 2.851953e-03	ci left: 5.990471e-01	ci right 6.007588e-01	k: 755878	n:1260000
KS ci ratio: 1.082078e-01	ci left: 9.841643e-04	ci right 1.097514e-03	k: 1310	n:1260000
C5orf42   1260000 perm   929 sec   (1357 perm/sec)   p_kst 1.039683e-03   p_cons 5.999032e-01   p_joint 2.518254e-03

Joint ci ratio: 6.929597e-02	ci left: 2.426272e-03	ci right 2.601206e-03	k: 3191	n:1270000
Cons ci ratio: 2.840941e-03	ci left: 5.990103e-01	ci right 6.007152e-01	k: 761826	n:1270000
KS ci ratio: 1.076751e-01	ci left: 9.863749e-04	ci right 1.099385e-03	k: 1323	n:1270000
C5orf42   1270000 perm   941 sec   (1350 perm/sec)   p_kst 1.041732e-03   p_cons 5.998630e-01   p_joint 2.512598e-03

Joint ci ratio: 6.447361e-02	ci left: 2.786824e-03	ci right 2.973249e-03	k: 3685	n:1280000
Cons ci ratio: 2.829995e-03	ci left: 5.989842e-01	ci right 6.006825e-01	k: 767787	n:1280000
KS ci ratio: 1.071904e-01	ci left: 9.877920e-04	ci right 1.100423e-03	k: 1335	n:1280000
C5orf42   1280000 perm   953 sec   (1343 perm/sec)   p_kst 1.042969e-03   p_cons 5.998336e-01   p_joint 2.878906e-03

Joint ci ratio: 6.515140e-02	ci left: 2.707257e-03	ci right 2.890335e-03	k: 3609	n:1290000
Cons ci ratio: 2.818783e-03	ci left: 5.990253e-01	ci right 6.007169e-01	k: 773834	n:1290000
KS ci ratio: 1.067122e-01	ci left: 9.891882e-04	ci right 1.101443e-03	k: 1347	n:1290000
C5orf42   1290000 perm   965 sec   (1337 perm/sec)   p_kst 1.044186e-03   p_cons 5.998713e-01   p_joint 2.797674e-03

Joint ci ratio: 6.512498e-02	ci left: 2.688702e-03	ci right 2.870448e-03	k: 3612	n:1300000
Cons ci ratio: 2.807649e-03	ci left: 5.990749e-01	ci right 6.007600e-01	k: 779893	n:1300000
KS ci ratio: 1.063578e-01	ci left: 9.883177e-04	ci right 1.100078e-03	k: 1356	n:1300000
C5orf42   1300000 perm   977 sec   (1331 perm/sec)   p_kst 1.043077e-03   p_cons 5.999177e-01   p_joint 2.778462e-03

Joint ci ratio: 6.492774e-02	ci left: 2.684698e-03	ci right 2.865603e-03	k: 3634	n:1310000
Cons ci ratio: 2.797229e-03	ci left: 5.990238e-01	ci right 6.007025e-01	k: 785821	n:1310000
KS ci ratio: 1.061626e-01	ci left: 9.844885e-04	ci right 1.095599e-03	k: 1361	n:1310000
C5orf42   1310000 perm   989 sec   (1325 perm/sec)   p_kst 1.038931e-03   p_cons 5.998634e-01   p_joint 2.774046e-03

Joint ci ratio: 6.468796e-02	ci left: 2.684482e-03	ci right 2.864680e-03	k: 3661	n:1320000
Cons ci ratio: 2.786854e-03	ci left: 5.989856e-01	ci right 6.006579e-01	k: 791765	n:1320000
KS ci ratio: 1.058136e-01	ci left: 9.836677e-04	ci right 1.094298e-03	k: 1370	n:1320000
C5orf42   1320000 perm   1001 sec   (1318 perm/sec)   p_kst 1.037879e-03   p_cons 5.998220e-01   p_joint 2.773485e-03

Joint ci ratio: 6.458262e-02	ci left: 2.673174e-03	ci right 2.852310e-03	k: 3673	n:1330000
Cons ci ratio: 2.776467e-03	ci left: 5.989698e-01	ci right 6.006358e-01	k: 797738	n:1330000
KS ci ratio: 1.054681e-01	ci left: 9.828598e-04	ci right 1.093016e-03	k: 1379	n:1330000
C5orf42   1330000 perm   1013 sec   (1312 perm/sec)   p_kst 1.036842e-03   p_cons 5.998030e-01   p_joint 2.761654e-03

Joint ci ratio: 6.432920e-02	ci left: 2.674518e-03	ci right 2.853015e-03	k: 3702	n:1340000
Cons ci ratio: 2.766135e-03	ci left: 5.989646e-01	ci right 6.006245e-01	k: 803725	n:1340000
KS ci ratio: 1.052777e-01	ci left: 9.791579e-04	ci right 1.088689e-03	k: 1384	n:1340000
C5orf42   1340000 perm   1026 sec   (1307 perm/sec)   p_kst 1.032836e-03   p_cons 5.997948e-01   p_joint 2.762687e-03

Joint ci ratio: 6.414772e-02	ci left: 2.670013e-03	ci right 2.847687e-03	k: 3723	n:1350000
Cons ci ratio: 2.755628e-03	ci left: 5.990100e-01	ci right 6.006636e-01	k: 809780	n:1350000
KS ci ratio: 1.047870e-01	ci left: 9.812816e-04	ci right 1.090507e-03	k: 1397	n:1350000
C5orf42   1350000 perm   1038 sec   (1301 perm/sec)   p_kst 1.034815e-03   p_cons 5.998370e-01   p_joint 2.757778e-03

Joint ci ratio: 6.447909e-02	ci left: 2.622886e-03	ci right 2.798360e-03	k: 3685	n:1360000
Cons ci ratio: 2.745224e-03	ci left: 5.990576e-01	ci right 6.007052e-01	k: 815839	n:1360000
KS ci ratio: 1.044885e-01	ci left: 9.797947e-04	ci right 1.088525e-03	k: 1405	n:1360000
C5orf42   1360000 perm   1051 sec   (1295 perm/sec)   p_kst 1.033088e-03   p_cons 5.998816e-01   p_joint 2.709559e-03

Joint ci ratio: 6.428765e-02	ci left: 2.619541e-03	ci right 2.794251e-03	k: 3707	n:1370000
Cons ci ratio: 2.735082e-03	ci left: 5.990791e-01	ci right 6.007205e-01	k: 821863	n:1370000
KS ci ratio: 1.042295e-01	ci left: 9.776190e-04	ci right 1.085822e-03	k: 1412	n:1370000
C5orf42   1370000 perm   1063 sec   (1289 perm/sec)   p_kst 1.030657e-03   p_cons 5.999000e-01   p_joint 2.705839e-03

Joint ci ratio: 6.406346e-02	ci left: 2.619097e-03	ci right 2.793145e-03	k: 3733	n:1380000
Cons ci ratio: 2.725273e-03	ci left: 5.990610e-01	ci right 6.006965e-01	k: 827833	n:1380000
KS ci ratio: 1.039724e-01	ci left: 9.754751e-04	ci right 1.083158e-03	k: 1419	n:1380000
C5orf42   1380000 perm   1076 sec   (1283 perm/sec)   p_kst 1.028261e-03   p_cons 5.998790e-01   p_joint 2.705072e-03

Joint ci ratio: 6.379909e-02	ci left: 2.622200e-03	ci right 2.795709e-03	k: 3764	n:1390000
Cons ci ratio: 2.715582e-03	ci left: 5.990411e-01	ci right 6.006707e-01	k: 833800	n:1390000
KS ci ratio: 1.036445e-01	ci left: 9.747640e-04	ci right 1.082009e-03	k: 1428	n:1390000
C5orf42   1390000 perm   1089 sec   (1277 perm/sec)   p_kst 1.027338e-03   p_cons 5.998561e-01   p_joint 2.707914e-03

Joint ci ratio: 6.357155e-02	ci left: 2.622449e-03	ci right 2.795333e-03	k: 3791	n:1400000
Cons ci ratio: 2.705880e-03	ci left: 5.990415e-01	ci right 6.006653e-01	k: 839795	n:1400000
KS ci ratio: 1.032838e-01	ci left: 9.747594e-04	ci right 1.081608e-03	k: 1438	n:1400000
C5orf42   1400000 perm   1101 sec   (1271 perm/sec)   p_kst 1.027143e-03   p_cons 5.998536e-01   p_joint 2.707857e-03

Joint ci ratio: 6.338805e-02	ci left: 2.619205e-03	ci right 2.791358e-03	k: 3813	n:1410000
Cons ci ratio: 2.696210e-03	ci left: 5.990546e-01	ci right 6.006726e-01	k: 845808	n:1410000
KS ci ratio: 1.029268e-01	ci left: 9.747555e-04	ci right 1.081212e-03	k: 1448	n:1410000
C5orf42   1410000 perm   1114 sec   (1265 perm/sec)   p_kst 1.026950e-03   p_cons 5.998638e-01   p_joint 2.704255e-03

Joint ci ratio: 6.315663e-02	ci left: 2.620166e-03	ci right 2.791731e-03	k: 3841	n:1420000
Cons ci ratio: 2.686631e-03	ci left: 5.990697e-01	ci right 6.006820e-01	k: 851824	n:1420000
KS ci ratio: 1.025735e-01	ci left: 9.747523e-04	ci right 1.080821e-03	k: 1458	n:1420000
C5orf42   1420000 perm   1127 sec   (1260 perm/sec)   p_kst 1.026761e-03   p_cons 5.998761e-01   p_joint 2.704930e-03

Joint ci ratio: 6.283012e-02	ci left: 2.629375e-03	ci right 2.800621e-03	k: 3881	n:1430000
Cons ci ratio: 2.677208e-03	ci left: 5.990748e-01	ci right 6.006815e-01	k: 857826	n:1430000
KS ci ratio: 1.020501e-01	ci left: 9.781571e-04	ci right 1.084020e-03	k: 1473	n:1430000
C5orf42   1430000 perm   1140 sec   (1254 perm/sec)   p_kst 1.030070e-03   p_cons 5.998783e-01   p_joint 2.713986e-03

Joint ci ratio: 6.258066e-02	ci left: 2.632306e-03	ci right 2.803037e-03	k: 3912	n:1440000
Cons ci ratio: 2.667583e-03	ci left: 5.991340e-01	ci right 6.007350e-01	k: 863906	n:1440000
KS ci ratio: 1.016371e-01	ci left: 9.794854e-04	ci right 1.085038e-03	k: 1485	n:1440000
C5orf42   1440000 perm   1154 sec   (1248 perm/sec)   p_kst 1.031250e-03   p_cons 5.999347e-01   p_joint 2.716667e-03

Joint ci ratio: 6.329067e-02	ci left: 2.555093e-03	ci right 2.722765e-03	k: 3825	n:1450000
Cons ci ratio: 2.658549e-03	ci left: 5.991041e-01	ci right 6.006996e-01	k: 869858	n:1450000
KS ci ratio: 1.012969e-01	ci left: 9.794519e-04	ci right 1.084626e-03	k: 1495	n:1450000
C5orf42   1450000 perm   1167 sec   (1243 perm/sec)   p_kst 1.031034e-03   p_cons 5.999021e-01   p_joint 2.637931e-03

Joint ci ratio: 6.329125e-02	ci left: 2.537592e-03	ci right 2.704117e-03	k: 3825	n:1460000
Cons ci ratio: 2.649210e-03	ci left: 5.991466e-01	ci right 6.007366e-01	k: 875915	n:1460000
KS ci ratio: 1.009936e-01	ci left: 9.787518e-04	ci right 1.083518e-03	k: 1504	n:1460000
C5orf42   1460000 perm   1180 sec   (1237 perm/sec)   p_kst 1.030137e-03   p_cons 5.999418e-01   p_joint 2.619863e-03

Joint ci ratio: 6.303628e-02	ci left: 2.541085e-03	ci right 2.707143e-03	k: 3856	n:1470000
Cons ci ratio: 2.640320e-03	ci left: 5.991245e-01	ci right 6.007091e-01	k: 881878	n:1470000
KS ci ratio: 1.005270e-01	ci left: 9.813775e-04	ci right 1.085911e-03	k: 1518	n:1470000
C5orf42   1470000 perm   1194 sec   (1231 perm/sec)   p_kst 1.032653e-03   p_cons 5.999170e-01   p_joint 2.623129e-03

Joint ci ratio: 6.288988e-02	ci left: 2.535886e-03	ci right 2.701205e-03	k: 3874	n:1480000
Cons ci ratio: 2.631311e-03	ci left: 5.991406e-01	ci right 6.007198e-01	k: 887897	n:1480000
KS ci ratio: 1.002962e-01	ci left: 9.793574e-04	ci right 1.083422e-03	k: 1525	n:1480000
C5orf42   1480000 perm   1207 sec   (1226 perm/sec)   p_kst 1.030405e-03   p_cons 5.999304e-01   p_joint 2.617568e-03

Joint ci ratio: 6.269607e-02	ci left: 2.534721e-03	ci right 2.699437e-03	k: 3898	n:1490000
Cons ci ratio: 2.622750e-03	ci left: 5.990913e-01	ci right 6.006653e-01	k: 893819	n:1490000
KS ci ratio: 9.996923e-02	ci left: 9.793279e-04	ci right 1.083030e-03	k: 1535	n:1490000
C5orf42   1490000 perm   1220 sec   (1221 perm/sec)   p_kst 1.030201e-03   p_cons 5.998785e-01   p_joint 2.616107e-03

Outputting figure to mutsig2_images.part000000000026/C5orf42.20_9798_1490000_0.0010302_0.59988_0.0026161.png
                gene_name: C5orf42
               theta_stop: 0.100 
                    nperm: 1490000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00098 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.0026 
     ci_joint_bounds_left: 0.0025 
    ci_joint_bounds_right: 0.0027 

Current progress: 6 percent done.
C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
Cons ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
KS ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
C6   10000 perm   2 sec   (5131 perm/sec)   p_kst 9.735000e-01   p_cons 1.084000e-01   p_joint 3.640000e-01

Joint ci ratio: 3.611912e-02	ci left: 3.639008e-01	ci right 3.773369e-01	k: 7412	n:20000
Cons ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
KS ci ratio: 4.664911e-03	ci left: 9.701387e-01	ci right 9.747225e-01	k: 19450	n:20000
C6   20000 perm   4 sec   (4685 perm/sec)   p_kst 9.725000e-01   p_cons 1.037500e-01   p_joint 3.706000e-01

Outputting figure to mutsig2_images.part000000000026/C6.14_2873_20000_0.9725_0.10375_0.3706.png
                gene_name: C6
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 9 percent done.
C6orf138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
C6orf138   10000 perm   2 sec   (5500 perm/sec)   p_kst 3.987000e-01   p_cons 1.651000e-01   p_joint 4.411000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf138.14_2553_10000_0.3987_0.1651_0.4411.png
                gene_name: C6orf138
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 11 percent done.
C6orf167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
Cons ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
KS ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
C6orf167   10000 perm   2 sec   (5396 perm/sec)   p_kst 2.390000e-01   p_cons 8.156000e-01   p_joint 4.093000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf167.8_3828_10000_0.239_0.8156_0.4093.png
                gene_name: C6orf167
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 14 percent done.
C6orf170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
C6orf170   10000 perm   2 sec   (5141 perm/sec)   p_kst 7.981000e-01   p_cons 9.500000e-02   p_joint 3.254000e-01

Joint ci ratio: 4.146991e-02	ci left: 3.023506e-01	ci right 3.152050e-01	k: 6175	n:20000
Cons ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
KS ci ratio: 1.394827e-02	ci left: 7.923171e-01	ci right 8.034962e-01	k: 15959	n:20000
C6orf170   20000 perm   4 sec   (4688 perm/sec)   p_kst 7.979500e-01   p_cons 9.235000e-02   p_joint 3.087500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf170.8_3902_20000_0.79795_0.09235_0.30875.png
                gene_name: C6orf170
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
C6orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
KS ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
C6orf118   10000 perm   1 sec   (6707 perm/sec)   p_kst 5.870000e-02   p_cons 3.720000e-02   p_joint 4.050000e-02

Joint ci ratio: 1.478567e-01	ci left: 3.143485e-02	ci right 3.650181e-02	k: 678	n:20000
Cons ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
KS ci ratio: 1.102495e-01	ci left: 5.616335e-02	ci right 6.276545e-02	k: 1188	n:20000
C6orf118   20000 perm   3 sec   (6000 perm/sec)   p_kst 5.940000e-02   p_cons 3.670000e-02   p_joint 3.390000e-02

Joint ci ratio: 1.453614e-01	ci left: 2.194399e-02	ci right 2.541576e-02	k: 709	n:30000
Cons ci ratio: 1.154599e-01	ci left: 3.485986e-02	ci right 3.916373e-02	k: 1109	n:30000
KS ci ratio: 9.000558e-02	ci left: 5.678398e-02	ci right 6.216840e-02	k: 1783	n:30000
C6orf118   30000 perm   5 sec   (5692 perm/sec)   p_kst 5.943333e-02   p_cons 3.696667e-02   p_joint 2.363333e-02

Joint ci ratio: 1.493757e-01	ci left: 1.565950e-02	ci right 1.821133e-02	k: 676	n:40000
Cons ci ratio: 9.671361e-02	ci left: 3.753892e-02	ci right 4.137831e-02	k: 1577	n:40000
KS ci ratio: 7.836272e-02	ci left: 5.656326e-02	ci right 6.120104e-02	k: 2354	n:40000
C6orf118   40000 perm   7 sec   (5510 perm/sec)   p_kst 5.885000e-02   p_cons 3.942500e-02   p_joint 1.690000e-02

Joint ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
Cons ci ratio: 8.592687e-02	ci left: 3.824036e-02	ci right 4.169331e-02	k: 1997	n:50000
KS ci ratio: 7.043055e-02	ci left: 5.628158e-02	ci right 6.040988e-02	k: 2916	n:50000
C6orf118   50000 perm   9 sec   (5366 perm/sec)   p_kst 5.832000e-02   p_cons 3.994000e-02   p_joint 1.282000e-02

Joint ci ratio: 1.253014e-01	ci left: 1.504344e-02	ci right 1.707043e-02	k: 962	n:60000
Cons ci ratio: 7.802762e-02	ci left: 3.878940e-02	ci right 4.195525e-02	k: 2421	n:60000
KS ci ratio: 6.421038e-02	ci left: 5.660238e-02	ci right 6.037380e-02	k: 3508	n:60000
C6orf118   60000 perm   11 sec   (5242 perm/sec)   p_kst 5.846667e-02   p_cons 4.035000e-02   p_joint 1.603333e-02

Joint ci ratio: 1.250530e-01	ci left: 1.297653e-02	ci right 1.472125e-02	k: 968	n:70000
Cons ci ratio: 7.210234e-02	ci left: 3.905161e-02	ci right 4.198664e-02	k: 2835	n:70000
KS ci ratio: 5.968642e-02	ci left: 5.630781e-02	ci right 5.978608e-02	k: 4062	n:70000
C6orf118   70000 perm   14 sec   (5132 perm/sec)   p_kst 5.802857e-02   p_cons 4.050000e-02   p_joint 1.382857e-02

Joint ci ratio: 1.087730e-01	ci left: 1.510536e-02	ci right 1.685500e-02	k: 1277	n:80000
Cons ci ratio: 6.714545e-02	ci left: 3.948878e-02	ci right 4.224465e-02	k: 3268	n:80000
KS ci ratio: 5.582155e-02	ci left: 5.643941e-02	ci right 5.969273e-02	k: 4644	n:80000
C6orf118   80000 perm   16 sec   (5027 perm/sec)   p_kst 5.805000e-02   p_cons 4.085000e-02   p_joint 1.596250e-02

Joint ci ratio: 1.042128e-01	ci left: 1.467056e-02	ci right 1.629422e-02	k: 1392	n:90000
Cons ci ratio: 6.336490e-02	ci left: 3.949494e-02	ci right 4.209032e-02	k: 3670	n:90000
KS ci ratio: 5.282050e-02	ci left: 5.614144e-02	ci right 5.919826e-02	k: 5189	n:90000
C6orf118   90000 perm   18 sec   (4934 perm/sec)   p_kst 5.765556e-02   p_cons 4.077778e-02   p_joint 1.546667e-02

Joint ci ratio: 1.026989e-01	ci left: 1.362200e-02	ci right 1.510637e-02	k: 1435	n:100000
Cons ci ratio: 6.008170e-02	ci left: 3.960193e-02	ci right 4.206480e-02	k: 4082	n:100000
KS ci ratio: 5.019159e-02	ci left: 5.604523e-02	ci right 5.894050e-02	k: 5748	n:100000
C6orf118   100000 perm   21 sec   (4842 perm/sec)   p_kst 5.748000e-02   p_cons 4.082000e-02   p_joint 1.435000e-02

Joint ci ratio: 1.013810e-01	ci left: 1.272883e-02	ci right 1.409700e-02	k: 1474	n:110000
Cons ci ratio: 6.120920e-02	ci left: 3.484412e-02	ci right 3.705316e-02	k: 3953	n:110000
KS ci ratio: 4.790769e-02	ci left: 5.599660e-02	ci right 5.875407e-02	k: 6310	n:110000
C6orf118   110000 perm   23 sec   (4755 perm/sec)   p_kst 5.736364e-02   p_cons 3.593636e-02   p_joint 1.340000e-02

Joint ci ratio: 1.004434e-01	ci left: 1.190340e-02	ci right 1.317032e-02	k: 1503	n:120000
Cons ci ratio: 5.858544e-02	ci left: 3.491196e-02	ci right 3.702720e-02	k: 4315	n:120000
KS ci ratio: 4.578961e-02	ci left: 5.623886e-02	ci right 5.888257e-02	k: 6906	n:120000
C6orf118   120000 perm   26 sec   (4675 perm/sec)   p_kst 5.755000e-02   p_cons 3.595833e-02   p_joint 1.252500e-02

Joint ci ratio: 9.887557e-02	ci left: 1.135513e-02	ci right 1.254372e-02	k: 1552	n:130000
Cons ci ratio: 5.624135e-02	ci left: 3.500902e-02	ci right 3.704251e-02	k: 4682	n:130000
KS ci ratio: 4.392659e-02	ci left: 5.645372e-02	ci right 5.899682e-02	k: 7503	n:130000
C6orf118   130000 perm   28 sec   (4600 perm/sec)   p_kst 5.771538e-02   p_cons 3.601538e-02   p_joint 1.193846e-02

Outputting figure to mutsig2_images.part000000000026/C6orf118.7_1446_130000_0.057715_0.036015_0.011938.png
                gene_name: C6orf118
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.013 

Current progress: 20 percent done.
C6orf142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
Cons ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
KS ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
C6orf142   10000 perm   2 sec   (6442 perm/sec)   p_kst 6.439000e-01   p_cons 7.539000e-01   p_joint 7.531000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf142.7_1429_10000_0.6439_0.7539_0.7531.png
                gene_name: C6orf142
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 23 percent done.
C6orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
C6orf10   10000 perm   2 sec   (6432 perm/sec)   p_kst 5.150000e-02   p_cons 1.118000e-01   p_joint 3.860000e-02

Joint ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
Cons ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
KS ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
C6orf10   20000 perm   3 sec   (5811 perm/sec)   p_kst 4.965000e-02   p_cons 1.189500e-01   p_joint 3.865000e-02

Joint ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
Cons ci ratio: 6.186484e-02	ci left: 1.143699e-01	ci right 1.217043e-01	k: 3540	n:30000
KS ci ratio: 1.033802e-01	ci left: 4.336429e-02	ci right 4.812418e-02	k: 1371	n:30000
C6orf10   30000 perm   5 sec   (5547 perm/sec)   p_kst 4.570000e-02   p_cons 1.180000e-01   p_joint 5.343333e-02

Joint ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
Cons ci ratio: 5.345054e-02	ci left: 1.153480e-01	ci right 1.217075e-01	k: 4740	n:40000
KS ci ratio: 8.905511e-02	ci left: 4.413888e-02	ci right 4.827732e-02	k: 1847	n:40000
C6orf10   40000 perm   8 sec   (5328 perm/sec)   p_kst 4.617500e-02   p_cons 1.185000e-01   p_joint 4.015000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf10.6_1488_40000_0.046175_0.1185_0.04015.png
                gene_name: C6orf10
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 26 percent done.
C6orf221
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
KS ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
C6orf221   10000 perm   1 sec   (6801 perm/sec)   p_kst 5.910000e-01   p_cons 7.607000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf221.6_666_10000_0.591_0.7607_0.767.png
                gene_name: C6orf221
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 29 percent done.
C6orf204
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
Cons ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
KS ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
C6orf204   10000 perm   2 sec   (6053 perm/sec)   p_kst 1.366000e-01   p_cons 1.543000e-01   p_joint 1.311000e-01

Joint ci ratio: 7.734954e-02	ci left: 1.093810e-01	ci right 1.182316e-01	k: 2275	n:20000
Cons ci ratio: 6.593066e-02	ci left: 1.452254e-01	ci right 1.551765e-01	k: 3003	n:20000
KS ci ratio: 7.038866e-02	ci left: 1.295043e-01	ci right 1.390023e-01	k: 2684	n:20000
C6orf204   20000 perm   4 sec   (5534 perm/sec)   p_kst 1.342000e-01   p_cons 1.501500e-01   p_joint 1.137500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf204.5_2610_20000_0.1342_0.15015_0.11375.png
                gene_name: C6orf204
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
C6orf222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
KS ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
C6orf222   10000 perm   2 sec   (6652 perm/sec)   p_kst 9.766000e-01   p_cons 8.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf222.5_2003_10000_0.9766_0.8638_1.png
                gene_name: C6orf222
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
C6orf97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
KS ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
C6orf97   10000 perm   2 sec   (6453 perm/sec)   p_kst 8.605000e-01   p_cons 7.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf97.5_2192_10000_0.8605_0.7424_1.png
                gene_name: C6orf97
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
C7orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438252e-02	ci left: 8.749018e-01	ci right 8.876752e-01	k: 8814	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
C7orf10   10000 perm   1 sec   (6902 perm/sec)   p_kst 5.222000e-01   p_cons 8.412000e-01   p_joint 8.814000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf10.5_1365_10000_0.5222_0.8412_0.8814.png
                gene_name: C7orf10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 40 percent done.
C5orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
Cons ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
C5orf33   10000 perm   1 sec   (7815 perm/sec)   p_kst 1.391000e-01   p_cons 8.825000e-01   p_joint 2.993000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf33.4_1377_10000_0.1391_0.8825_0.2993.png
                gene_name: C5orf33
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 43 percent done.
C6orf136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
Cons ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
KS ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
C6orf136   10000 perm   2 sec   (6602 perm/sec)   p_kst 2.029000e-01   p_cons 3.270000e-02   p_joint 6.430000e-02

Joint ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
Cons ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
KS ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
C6orf136   20000 perm   3 sec   (5920 perm/sec)   p_kst 2.016000e-01   p_cons 3.210000e-02   p_joint 5.775000e-02

Joint ci ratio: 1.040174e-01	ci left: 4.284418e-02	ci right 4.757773e-02	k: 1355	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 4.398449e-02	ci left: 2.047083e-01	ci right 2.139481e-01	k: 6279	n:30000
C6orf136   30000 perm   5 sec   (5658 perm/sec)   p_kst 2.093000e-01   p_cons 3.020000e-02   p_joint 4.516667e-02

Joint ci ratio: 7.253267e-02	ci left: 6.557644e-02	ci right 7.053649e-02	k: 2721	n:40000
Cons ci ratio: 1.083244e-01	ci left: 2.998029e-02	ci right 3.343813e-02	k: 1267	n:40000
KS ci ratio: 3.845018e-02	ci left: 2.022690e-01	ci right 2.102237e-01	k: 8249	n:40000
C6orf136   40000 perm   7 sec   (5486 perm/sec)   p_kst 2.062250e-01   p_cons 3.167500e-02   p_joint 6.802500e-02

Joint ci ratio: 6.715391e-02	ci left: 6.165349e-02	ci right 6.595732e-02	k: 3189	n:50000
Cons ci ratio: 9.246204e-02	ci left: 3.309331e-02	ci right 3.632101e-02	k: 1734	n:50000
KS ci ratio: 3.428311e-02	ci left: 2.037141e-01	ci right 2.108399e-01	k: 10363	n:50000
C6orf136   50000 perm   9 sec   (5320 perm/sec)   p_kst 2.072600e-01   p_cons 3.468000e-02   p_joint 6.378000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf136.4_1515_50000_0.20726_0.03468_0.06378.png
                gene_name: C6orf136
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 46 percent done.
C6orf174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
KS ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
C6orf174   10000 perm   2 sec   (6071 perm/sec)   p_kst 3.960000e-02   p_cons 7.150000e-02   p_joint 4.270000e-02

Joint ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
Cons ci ratio: 9.616914e-02	ci left: 7.299974e-02	ci right 8.042388e-02	k: 1533	n:20000
KS ci ratio: 1.374079e-01	ci left: 3.640751e-02	ci right 4.182754e-02	k: 781	n:20000
C6orf174   20000 perm   4 sec   (5444 perm/sec)   p_kst 3.905000e-02   p_cons 7.665000e-02   p_joint 3.880000e-02

Joint ci ratio: 1.577530e-01	ci left: 1.857388e-02	ci right 2.178665e-02	k: 604	n:30000
Cons ci ratio: 8.074826e-02	ci left: 6.988485e-02	ci right 7.579819e-02	k: 2184	n:30000
KS ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
C6orf174   30000 perm   6 sec   (5216 perm/sec)   p_kst 3.743333e-02   p_cons 7.280000e-02   p_joint 2.013333e-02

Joint ci ratio: 1.001674e-01	ci left: 3.502497e-02	ci right 3.874266e-02	k: 1474	n:40000
Cons ci ratio: 6.963853e-02	ci left: 7.083822e-02	ci right 7.597391e-02	k: 2935	n:40000
KS ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
C6orf174   40000 perm   8 sec   (5076 perm/sec)   p_kst 3.760000e-02   p_cons 7.337500e-02   p_joint 3.685000e-02

Joint ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
Cons ci ratio: 6.208613e-02	ci left: 7.154288e-02	ci right 7.614675e-02	k: 3691	n:50000
KS ci ratio: 8.844715e-02	ci left: 3.612567e-02	ci right 3.948826e-02	k: 1889	n:50000
C6orf174   50000 perm   10 sec   (4953 perm/sec)   p_kst 3.778000e-02   p_cons 7.382000e-02   p_joint 2.656000e-02

Joint ci ratio: 8.315224e-02	ci left: 3.422955e-02	ci right 3.721558e-02	k: 2142	n:60000
Cons ci ratio: 5.666565e-02	ci left: 7.176970e-02	ci right 7.597163e-02	k: 4431	n:60000
KS ci ratio: 8.050148e-02	ci left: 3.648419e-02	ci right 3.956071e-02	k: 2280	n:60000
C6orf174   60000 perm   12 sec   (4851 perm/sec)   p_kst 3.800000e-02   p_cons 7.385000e-02   p_joint 3.570000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf174.4_2868_60000_0.038_0.07385_0.0357.png
                gene_name: C6orf174
               theta_stop: 0.083 
                    nperm: 60000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 49 percent done.
C6orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
Cons ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
KS ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
C6orf27   10000 perm   2 sec   (6320 perm/sec)   p_kst 8.640000e-02   p_cons 7.314000e-01   p_joint 2.128000e-01

Joint ci ratio: 5.279213e-02	ci left: 2.103629e-01	ci right 2.218197e-01	k: 4321	n:20000
Cons ci ratio: 1.686998e-02	ci left: 7.234869e-01	ci right 7.358463e-01	k: 14594	n:20000
KS ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
C6orf27   20000 perm   4 sec   (5682 perm/sec)   p_kst 8.265000e-02   p_cons 7.297000e-01   p_joint 2.160500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf27.4_2739_20000_0.08265_0.7297_0.21605.png
                gene_name: C6orf27
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 51 percent done.
C5orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
C5orf34   10000 perm   1 sec   (6776 perm/sec)   p_kst 4.451000e-01   p_cons 1.949000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf34.3_1965_10000_0.4451_0.1949_0.3526.png
                gene_name: C5orf34
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 54 percent done.
C5orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
C5orf55   10000 perm   1 sec   (7736 perm/sec)   p_kst 3.390000e-02   p_cons 2.303000e-01   p_joint 6.890000e-02

Joint ci ratio: 9.734244e-02	ci left: 7.133775e-02	ci right 7.868638e-02	k: 1499	n:20000
Cons ci ratio: 5.060922e-02	ci left: 2.248759e-01	ci right 2.366025e-01	k: 4614	n:20000
KS ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
C5orf55   20000 perm   3 sec   (6824 perm/sec)   p_kst 2.970000e-02   p_cons 2.307000e-01   p_joint 7.495000e-02

Joint ci ratio: 8.616707e-02	ci left: 6.174596e-02	ci right 6.733873e-02	k: 1935	n:30000
Cons ci ratio: 3.808578e-02	ci left: 2.559707e-01	ci right 2.659423e-01	k: 7828	n:30000
KS ci ratio: 1.282497e-01	ci left: 2.826008e-02	ci right 3.216494e-02	k: 905	n:30000
C5orf55   30000 perm   5 sec   (6490 perm/sec)   p_kst 3.016667e-02   p_cons 2.609333e-01   p_joint 6.450000e-02

Joint ci ratio: 1.072803e-01	ci left: 3.056460e-02	ci right 3.405373e-02	k: 1291	n:40000
Cons ci ratio: 3.282301e-02	ci left: 2.585163e-01	ci right 2.671682e-01	k: 10513	n:40000
KS ci ratio: 1.069812e-01	ci left: 3.073506e-02	ci right 3.423324e-02	k: 1298	n:40000
C5orf55   40000 perm   6 sec   (6265 perm/sec)   p_kst 3.245000e-02   p_cons 2.628250e-01   p_joint 3.227500e-02

Joint ci ratio: 8.730138e-02	ci left: 3.706536e-02	ci right 4.046846e-02	k: 1937	n:50000
Cons ci ratio: 2.933889e-02	ci left: 2.592245e-01	ci right 2.669631e-01	k: 13154	n:50000
KS ci ratio: 9.580153e-02	ci left: 3.084569e-02	ci right 3.396891e-02	k: 1619	n:50000
C5orf55   50000 perm   8 sec   (6078 perm/sec)   p_kst 3.238000e-02   p_cons 2.630800e-01   p_joint 3.874000e-02

Outputting figure to mutsig2_images.part000000000026/C5orf55.3_364_50000_0.03238_0.26308_0.03874.png
                gene_name: C5orf55
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 57 percent done.
C5orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
C5orf58   10000 perm   1 sec   (8634 perm/sec)   p_kst 9.249000e-01   p_cons 6.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C5orf58.3_321_10000_0.9249_0.6041_1.png
                gene_name: C5orf58
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
C6orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
C6orf15   10000 perm   1 sec   (7183 perm/sec)   p_kst 5.050000e-02   p_cons 2.570000e-01   p_joint 1.050000e-01

Joint ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
Cons ci ratio: 4.707433e-02	ci left: 2.513514e-01	ci right 2.635192e-01	k: 5148	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
C6orf15   20000 perm   3 sec   (6324 perm/sec)   p_kst 4.865000e-02   p_cons 2.574000e-01   p_joint 1.548500e-01

Joint ci ratio: 8.755303e-02	ci left: 5.988461e-02	ci right 6.540046e-02	k: 1878	n:30000
Cons ci ratio: 3.851167e-02	ci left: 2.517311e-01	ci right 2.616494e-01	k: 7700	n:30000
KS ci ratio: 9.949036e-02	ci left: 4.674709e-02	ci right 5.167402e-02	k: 1475	n:30000
C6orf15   30000 perm   5 sec   (6046 perm/sec)   p_kst 4.916667e-02   p_cons 2.566667e-01   p_joint 6.260000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf15.3_986_30000_0.049167_0.25667_0.0626.png
                gene_name: C6orf15
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 63 percent done.
C6orf182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
C6orf182   10000 perm   1 sec   (7279 perm/sec)   p_kst 7.104000e-01   p_cons 8.148000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf182.3_1423_10000_0.7104_0.8148_1.png
                gene_name: C6orf182
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
C6orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
Cons ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
C6orf58   10000 perm   1 sec   (7319 perm/sec)   p_kst 4.430000e-02   p_cons 1.734000e-01   p_joint 6.310000e-02

Joint ci ratio: 8.671576e-02	ci left: 8.866611e-02	ci right 9.675275e-02	k: 1853	n:20000
Cons ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
KS ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
C6orf58   20000 perm   3 sec   (6503 perm/sec)   p_kst 4.435000e-02   p_cons 1.725000e-01   p_joint 9.265000e-02

Joint ci ratio: 7.230355e-02	ci left: 8.599784e-02	ci right 9.248197e-02	k: 2676	n:30000
Cons ci ratio: 4.916771e-02	ci left: 1.705173e-01	ci right 1.791458e-01	k: 5244	n:30000
KS ci ratio: 1.058284e-01	ci left: 4.141435e-02	ci right 4.607452e-02	k: 1311	n:30000
C6orf58   30000 perm   5 sec   (6143 perm/sec)   p_kst 4.370000e-02   p_cons 1.748000e-01   p_joint 8.920000e-02

Joint ci ratio: 7.284906e-02	ci left: 6.503575e-02	ci right 6.997726e-02	k: 2699	n:40000
Cons ci ratio: 4.253392e-02	ci left: 1.714115e-01	ci right 1.788857e-01	k: 7005	n:40000
KS ci ratio: 9.149554e-02	ci left: 4.186405e-02	ci right 4.590250e-02	k: 1754	n:40000
C6orf58   40000 perm   7 sec   (5918 perm/sec)   p_kst 4.385000e-02   p_cons 1.751250e-01   p_joint 6.747500e-02

Outputting figure to mutsig2_images.part000000000026/C6orf58.3_1017_40000_0.04385_0.17513_0.067475.png
                gene_name: C6orf58
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 69 percent done.
C5orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
Cons ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
KS ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
C5orf45   10000 perm   1 sec   (7809 perm/sec)   p_kst 9.880000e-02   p_cons 4.280000e-01   p_joint 3.148000e-01

Joint ci ratio: 4.137781e-02	ci left: 3.032950e-01	ci right 3.161603e-01	k: 6194	n:20000
Cons ci ratio: 3.216579e-02	ci left: 4.192327e-01	ci right 4.329887e-01	k: 8522	n:20000
KS ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
C5orf45   20000 perm   3 sec   (6862 perm/sec)   p_kst 9.355000e-02   p_cons 4.261000e-01   p_joint 3.097000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf45.2_1060_20000_0.09355_0.4261_0.3097.png
                gene_name: C5orf45
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 71 percent done.
C5orf56
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 74 percent done.
C6orf115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
C6orf115   10000 perm   1 sec   (8338 perm/sec)   p_kst 4.544000e-01   p_cons 3.519000e-01   p_joint 9.737000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf115.2_254_10000_0.4544_0.3519_0.9737.png
                gene_name: C6orf115
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
C6orf130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
Cons ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
KS ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
C6orf130   10000 perm   1 sec   (8190 perm/sec)   p_kst 5.800000e-03   p_cons 1.160000e-02   p_joint 2.920000e-02

Joint ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
C6orf130   20000 perm   3 sec   (7198 perm/sec)   p_kst 5.450000e-03   p_cons 1.210000e-02   p_joint 2.140000e-02

Joint ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
Cons ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
KS ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
C6orf130   30000 perm   4 sec   (6723 perm/sec)   p_kst 5.233333e-03   p_cons 1.216667e-02   p_joint 3.380000e-02

Joint ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
Cons ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
KS ci ratio: 2.659978e-01	ci left: 4.682065e-03	ci right 6.141152e-03	k: 215	n:40000
C6orf130   40000 perm   6 sec   (6487 perm/sec)   p_kst 5.375000e-03   p_cons 1.222500e-02   p_joint 7.025000e-03

Joint ci ratio: 1.245701e-01	ci left: 1.820901e-02	ci right 2.064724e-02	k: 970	n:50000
Cons ci ratio: 1.555635e-01	ci left: 1.156377e-02	ci right 1.353343e-02	k: 626	n:50000
KS ci ratio: 2.361638e-01	ci left: 4.832940e-03	ci right 6.145478e-03	k: 273	n:50000
C6orf130   50000 perm   8 sec   (6290 perm/sec)   p_kst 5.460000e-03   p_cons 1.252000e-02   p_joint 1.940000e-02

Joint ci ratio: 1.709897e-01	ci left: 7.940509e-03	ci right 9.440928e-03	k: 520	n:60000
Cons ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
KS ci ratio: 2.129337e-01	ci left: 5.018582e-03	ci right 6.229991e-03	k: 336	n:60000
C6orf130   60000 perm   10 sec   (6124 perm/sec)   p_kst 5.600000e-03   p_cons 1.243333e-02   p_joint 8.666667e-03

Joint ci ratio: 1.050608e-01	ci left: 1.847456e-02	ci right 2.053697e-02	k: 1364	n:70000
Cons ci ratio: 1.321480e-01	ci left: 1.159333e-02	ci right 1.324745e-02	k: 868	n:70000
KS ci ratio: 1.974334e-01	ci left: 5.047041e-03	ci right 6.165969e-03	k: 391	n:70000
C6orf130   70000 perm   12 sec   (5970 perm/sec)   p_kst 5.585714e-03   p_cons 1.240000e-02   p_joint 1.948571e-02

Joint ci ratio: 9.811519e-02	ci left: 1.860183e-02	ci right 2.053324e-02	k: 1564	n:80000
Cons ci ratio: 1.233709e-01	ci left: 1.169311e-02	ci right 1.324255e-02	k: 996	n:80000
KS ci ratio: 1.838585e-01	ci left: 5.130421e-03	ci right 6.180917e-03	k: 451	n:80000
C6orf130   80000 perm   14 sec   (5822 perm/sec)   p_kst 5.637500e-03   p_cons 1.245000e-02   p_joint 1.955000e-02

Joint ci ratio: 9.254752e-02	ci left: 1.863916e-02	ci right 2.045866e-02	k: 1758	n:90000
Cons ci ratio: 1.160340e-01	ci left: 1.179513e-02	ci right 1.325877e-02	k: 1126	n:90000
KS ci ratio: 1.755265e-01	ci left: 5.027257e-03	ci right 6.005030e-03	k: 495	n:90000
C6orf130   90000 perm   16 sec   (5686 perm/sec)   p_kst 5.500000e-03   p_cons 1.251111e-02   p_joint 1.953333e-02

Joint ci ratio: 6.979451e-02	ci left: 2.951166e-02	ci right 3.165568e-02	k: 3057	n:100000
Cons ci ratio: 1.099118e-01	ci left: 1.186920e-02	ci right 1.325929e-02	k: 1255	n:100000
KS ci ratio: 1.654824e-01	ci left: 5.118110e-03	ci right 6.050919e-03	k: 557	n:100000
C6orf130   100000 perm   18 sec   (5568 perm/sec)   p_kst 5.570000e-03   p_cons 1.255000e-02   p_joint 3.057000e-02

Joint ci ratio: 6.626052e-02	ci left: 2.981366e-02	ci right 3.186573e-02	k: 3391	n:110000
Cons ci ratio: 1.042859e-01	ci left: 1.202003e-02	ci right 1.335130e-02	k: 1394	n:110000
KS ci ratio: 1.589311e-01	ci left: 5.062748e-03	ci right 5.945450e-03	k: 604	n:110000
C6orf130   110000 perm   20 sec   (5451 perm/sec)   p_kst 5.490909e-03   p_cons 1.267273e-02   p_joint 3.082727e-02

Joint ci ratio: 6.333696e-02	ci left: 2.995271e-02	ci right 3.192004e-02	k: 3711	n:120000
Cons ci ratio: 9.993995e-02	ci left: 1.202531e-02	ci right 1.329840e-02	k: 1518	n:120000
KS ci ratio: 1.501202e-01	ci left: 5.225710e-03	ci right 6.081779e-03	k: 677	n:120000
C6orf130   120000 perm   22 sec   (5338 perm/sec)   p_kst 5.641667e-03   p_cons 1.265000e-02   p_joint 3.092500e-02

Joint ci ratio: 6.105093e-02	ci left: 2.979922e-02	ci right 3.168332e-02	k: 3995	n:130000
Cons ci ratio: 9.696608e-02	ci left: 1.181300e-02	ci right 1.302428e-02	k: 1613	n:130000
KS ci ratio: 1.437885e-01	ci left: 5.275725e-03	ci right 6.100406e-03	k: 738	n:130000
C6orf130   130000 perm   25 sec   (5232 perm/sec)   p_kst 5.676923e-03   p_cons 1.240769e-02   p_joint 3.073077e-02

Joint ci ratio: 5.859447e-02	ci left: 3.007011e-02	ci right 3.189224e-02	k: 4336	n:140000
Cons ci ratio: 9.309116e-02	ci left: 1.192456e-02	ci right 1.309576e-02	k: 1750	n:140000
KS ci ratio: 1.380225e-01	ci left: 5.333038e-03	ci right 6.130500e-03	k: 801	n:140000
C6orf130   140000 perm   27 sec   (5130 perm/sec)   p_kst 5.721429e-03   p_cons 1.250000e-02   p_joint 3.097143e-02

Joint ci ratio: 5.678308e-02	ci left: 2.991825e-02	ci right 3.167329e-02	k: 4618	n:150000
Cons ci ratio: 9.010676e-02	ci left: 1.189823e-02	ci right 1.302740e-02	k: 1868	n:150000
KS ci ratio: 1.341523e-01	ci left: 5.280158e-03	ci right 6.045807e-03	k: 848	n:150000
C6orf130   150000 perm   30 sec   (5030 perm/sec)   p_kst 5.653333e-03   p_cons 1.245333e-02   p_joint 3.078667e-02

Joint ci ratio: 5.492213e-02	ci left: 3.000813e-02	ci right 3.170892e-02	k: 4936	n:160000
Cons ci ratio: 8.750366e-02	ci left: 1.184514e-02	ci right 1.293513e-02	k: 1981	n:160000
KS ci ratio: 1.294333e-01	ci left: 5.330927e-03	ci right 6.074657e-03	k: 911	n:160000
C6orf130   160000 perm   32 sec   (4938 perm/sec)   p_kst 5.693750e-03   p_cons 1.238125e-02   p_joint 3.085000e-02

Joint ci ratio: 6.725127e-02	ci left: 1.893474e-02	ci right 2.025819e-02	k: 3330	n:170000
Cons ci ratio: 8.480697e-02	ci left: 1.188510e-02	ci right 1.294339e-02	k: 2109	n:170000
KS ci ratio: 1.256340e-01	ci left: 5.336247e-03	ci right 6.057238e-03	k: 967	n:170000
C6orf130   170000 perm   35 sec   (4851 perm/sec)   p_kst 5.688235e-03   p_cons 1.240588e-02   p_joint 1.958824e-02

Joint ci ratio: 6.531817e-02	ci left: 1.897552e-02	ci right 2.026224e-02	k: 3530	n:180000
Cons ci ratio: 8.232653e-02	ci left: 1.192651e-02	ci right 1.295594e-02	k: 2238	n:180000
KS ci ratio: 1.210850e-01	ci left: 5.438233e-03	ci right 6.144493e-03	k: 1041	n:180000
C6orf130   180000 perm   38 sec   (4763 perm/sec)   p_kst 5.783333e-03   p_cons 1.243333e-02   p_joint 1.961111e-02

Joint ci ratio: 5.024850e-02	ci left: 3.025641e-02	ci right 3.182110e-02	k: 5896	n:190000
Cons ci ratio: 8.022344e-02	ci left: 1.191239e-02	ci right 1.291310e-02	k: 2357	n:190000
KS ci ratio: 1.176882e-01	ci left: 5.463480e-03	ci right 6.151730e-03	k: 1102	n:190000
C6orf130   190000 perm   41 sec   (4680 perm/sec)   p_kst 5.800000e-03   p_cons 1.240526e-02   p_joint 3.103158e-02

Joint ci ratio: 4.908388e-02	ci left: 3.014591e-02	ci right 3.166773e-02	k: 6180	n:200000
Cons ci ratio: 7.825770e-02	ci left: 1.190487e-02	ci right 1.287933e-02	k: 2477	n:200000
KS ci ratio: 1.147109e-01	ci left: 5.471879e-03	ci right 6.142567e-03	k: 1160	n:200000
C6orf130   200000 perm   43 sec   (4600 perm/sec)   p_kst 5.800000e-03   p_cons 1.238500e-02   p_joint 3.090000e-02

Joint ci ratio: 6.086209e-02	ci left: 1.878151e-02	ci right 1.996514e-02	k: 4067	n:210000
Cons ci ratio: 7.665410e-02	ci left: 1.182827e-02	ci right 1.277574e-02	k: 2582	n:210000
KS ci ratio: 1.122734e-01	ci left: 5.447272e-03	ci right 6.099817e-03	k: 1211	n:210000
C6orf130   210000 perm   46 sec   (4524 perm/sec)   p_kst 5.766667e-03   p_cons 1.229524e-02   p_joint 1.936667e-02

Joint ci ratio: 5.967528e-02	ci left: 1.866199e-02	ci right 1.981436e-02	k: 4231	n:220000
Cons ci ratio: 7.506039e-02	ci left: 1.178559e-02	ci right 1.270915e-02	k: 2693	n:220000
KS ci ratio: 1.101165e-01	ci left: 5.411777e-03	ci right 6.046807e-03	k: 1259	n:220000
C6orf130   220000 perm   49 sec   (4452 perm/sec)   p_kst 5.722727e-03   p_cons 1.224091e-02   p_joint 1.923182e-02

Joint ci ratio: 5.846717e-02	ci left: 1.860879e-02	ci right 1.973381e-02	k: 4408	n:230000
Cons ci ratio: 7.357539e-02	ci left: 1.174253e-02	ci right 1.264373e-02	k: 2803	n:230000
KS ci ratio: 1.072984e-01	ci left: 5.459874e-03	ci right 6.083116e-03	k: 1326	n:230000
C6orf130   230000 perm   53 sec   (4377 perm/sec)   p_kst 5.765217e-03   p_cons 1.218696e-02   p_joint 1.916522e-02

Joint ci ratio: 5.720254e-02	ci left: 1.864239e-02	ci right 1.974426e-02	k: 4605	n:240000
Cons ci ratio: 7.195054e-02	ci left: 1.177690e-02	ci right 1.265994e-02	k: 2931	n:240000
KS ci ratio: 1.051422e-01	ci left: 5.455456e-03	ci right 6.064906e-03	k: 1381	n:240000
C6orf130   240000 perm   56 sec   (4304 perm/sec)   p_kst 5.754167e-03   p_cons 1.221250e-02   p_joint 1.918750e-02

Joint ci ratio: 5.600468e-02	ci left: 1.868144e-02	ci right 1.976175e-02	k: 4804	n:250000
Cons ci ratio: 7.054558e-02	ci left: 1.176941e-02	ci right 1.263395e-02	k: 3049	n:250000
KS ci ratio: 1.028235e-01	ci left: 5.482688e-03	ci right 6.080857e-03	k: 1444	n:250000
C6orf130   250000 perm   59 sec   (4231 perm/sec)   p_kst 5.776000e-03   p_cons 1.219600e-02   p_joint 1.921600e-02

Joint ci ratio: 5.506447e-02	ci left: 1.859249e-02	ci right 1.964904e-02	k: 4970	n:260000
Cons ci ratio: 6.934181e-02	ci left: 1.172107e-02	ci right 1.256678e-02	k: 3156	n:260000
KS ci ratio: 1.005847e-01	ci left: 5.515461e-03	ci right 6.103329e-03	k: 1509	n:260000
C6orf130   260000 perm   62 sec   (4163 perm/sec)   p_kst 5.803846e-03   p_cons 1.213846e-02   p_joint 1.911538e-02

Joint ci ratio: 5.405753e-02	ci left: 1.858702e-02	ci right 1.962334e-02	k: 5157	n:270000
Cons ci ratio: 6.814479e-02	ci left: 1.169464e-02	ci right 1.252329e-02	k: 3268	n:270000
KS ci ratio: 9.902501e-02	ci left: 5.484521e-03	ci right 6.059499e-03	k: 1557	n:270000
C6orf130   270000 perm   66 sec   (4096 perm/sec)   p_kst 5.766667e-03   p_cons 1.210370e-02   p_joint 1.910000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf130.2_479_270000_0.0057667_0.012104_0.0191.png
                gene_name: C6orf130
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 80 percent done.
C6orf154
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
C6orf154   10000 perm   1 sec   (7839 perm/sec)   p_kst 5.713000e-01   p_cons 3.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf154.2_975_10000_0.5713_0.3367_1.png
                gene_name: C6orf154
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
C6orf165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.999325e-02	ci left: 6.211539e-01	ci right 6.401699e-01	k: 6307	n:10000
KS ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
C6orf165   10000 perm   1 sec   (7246 perm/sec)   p_kst 6.125000e-01   p_cons 6.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf165.2_1917_10000_0.6125_0.6307_1.png
                gene_name: C6orf165
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
C6orf191
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
Cons ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
KS ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
C6orf191   10000 perm   1 sec   (8576 perm/sec)   p_kst 4.650000e-01   p_cons 8.230000e-02   p_joint 1.367000e-01

Joint ci ratio: 5.751139e-02	ci left: 1.830507e-01	ci right 1.939400e-01	k: 3769	n:20000
Cons ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
KS ci ratio: 2.971743e-02	ci left: 4.582678e-01	ci right 4.721424e-01	k: 9304	n:20000
C6orf191   20000 perm   3 sec   (7508 perm/sec)   p_kst 4.652000e-01   p_cons 9.445000e-02   p_joint 1.884500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf191.2_407_20000_0.4652_0.09445_0.18845.png
                gene_name: C6orf191
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 89 percent done.
C6orf211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.371419e-02	ci left: 8.847277e-01	ci right 8.970435e-01	k: 8910	n:10000
KS ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
C6orf211   10000 perm   1 sec   (7610 perm/sec)   p_kst 5.977000e-01   p_cons 8.910000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf211.2_1346_10000_0.5977_0.891_1.png
                gene_name: C6orf211
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
C6orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
Cons ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
KS ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
C6orf64   10000 perm   1 sec   (7926 perm/sec)   p_kst 8.392000e-01   p_cons 2.144000e-01   p_joint 6.572000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf64.2_560_10000_0.8392_0.2144_0.6572.png
                gene_name: C6orf64
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 94 percent done.
C6orf81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 4.479465e-02	ci left: 4.238575e-01	ci right 4.433812e-01	k: 4336	n:10000
C6orf81   10000 perm   1 sec   (7861 perm/sec)   p_kst 4.336000e-01   p_cons 4.750000e-02   p_joint 2.090000e-01

Joint ci ratio: 5.228321e-02	ci left: 2.136312e-01	ci right 2.251505e-01	k: 4387	n:20000
Cons ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
KS ci ratio: 3.148789e-02	ci left: 4.296611e-01	ci right 4.434573e-01	k: 8731	n:20000
C6orf81   20000 perm   3 sec   (6891 perm/sec)   p_kst 4.365500e-01   p_cons 4.650000e-02   p_joint 2.193500e-01

Joint ci ratio: 4.288962e-02	ci left: 2.131071e-01	ci right 2.224809e-01	k: 6533	n:30000
Cons ci ratio: 1.031441e-01	ci left: 4.355936e-02	ci right 4.832908e-02	k: 1377	n:30000
KS ci ratio: 2.571835e-02	ci left: 4.307777e-01	ci right 4.420346e-01	k: 13092	n:30000
C6orf81   30000 perm   5 sec   (6563 perm/sec)   p_kst 4.364000e-01   p_cons 4.590000e-02   p_joint 2.177667e-01

Joint ci ratio: 3.724744e-02	ci left: 2.127948e-01	ci right 2.208963e-01	k: 8673	n:40000
Cons ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
KS ci ratio: 2.225045e-02	ci left: 4.320315e-01	ci right 4.417777e-01	k: 17476	n:40000
C6orf81   40000 perm   6 sec   (6304 perm/sec)   p_kst 4.369000e-01   p_cons 4.605000e-02   p_joint 2.168250e-01

Outputting figure to mutsig2_images.part000000000026/C6orf81.2_1128_40000_0.4369_0.04605_0.21682.png
                gene_name: C6orf81
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 97 percent done.
C6orf89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
C6orf89   10000 perm   1 sec   (7630 perm/sec)   p_kst 5.918000e-01   p_cons 3.920000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf89.2_1097_10000_0.5918_0.392_0.5007.png
                gene_name: C6orf89
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000026
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 26 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 4421789: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000027> was used as the working directory.
Started at Wed Oct 24 17:33:57 2012
Results reported at Wed Oct 24 17:42:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000027.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000027.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 27  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000027.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    692.23 sec.
    Max Memory :      5406 MB
    Max Swap   :      7718 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
27
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 27
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 27: processing genes 2353 - 2443
Calculating significance of each gene.
Using projection method.
In gene C7orf25 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1291    n = 1	mu =   7.03e-07
2353	C7orf25	4.947198e-01
2354	C7orf26	4.023172e-01
2355	C7orf27	8.840632e-01
2356	C7orf28A	1
2357	C7orf28B	6.746120e-01
2358	C7orf29	1
2359	C7orf30	6.549022e-01
2360	C7orf31	9.540784e-01
2361	C7orf33	7.241003e-02
2362	C7orf34	1.084616e-02
2363	C7orf36	1.003525e-01
2364	C7orf41	1
2365	C7orf42	8.633282e-01
2366	C7orf43	1
2367	C7orf44	1
2368	C7orf45	1.870213e-01
2369	C7orf46	7.075417e-01
2370	C7orf47	1
2371	C7orf49	1
2372	C7orf50	1
2373	C7orf51	9.597232e-01
2374	C7orf52	7.107654e-01
2375	C7orf53	2.882975e-01
2376	C7orf55	1
2377	C7orf57	1
2378	C7orf58	1.094094e-04
2379	C7orf59	2.318548e-01
2380	C7orf60	3.480376e-01
2381	C7orf61	1
2382	C7orf63	9.470048e-01
2383	C7orf64	4.900518e-02
2384	C7orf65	1
2385	C7orf66	3.369967e-02
2386	C7orf68	1
2387	C7orf69	1.505813e-01
2388	C7orf70	1
2389	C8A	9.418616e-01
2390	C8B	1.916146e-02
2391	C8G	1
2392	C8orf22	5.127404e-02
2393	C8orf31	1.662303e-01
2394	C8orf33	3.740954e-01
2395	C8orf34	8.213038e-01
2396	C8orf37	1.210656e-03
2397	C8orf38	1
2398	C8orf4	1
2399	C8orf40	1
2400	C8orf41	2.001244e-01
2401	C8orf42	5.825680e-01
2402	C8orf44	1
2403	C8orf45	4.893913e-01
2404	C8orf46	6.274950e-01
2405	C8orf47	6.791834e-01
2406	C8orf58	1
2407	C8orf59	1
2408	C8orf73	1
2409	C8orf74	2.847720e-01
2410	C8orf76	7.655063e-01
2411	C8orf79	8.741328e-01
2412	C8orf80	4.510582e-01
2413	C8orf84	3.659455e-02
2414	C8orf85	1
2415	C8orf86	1
2416	C9	8.071732e-01
2417	C9orf100	1
2418	C9orf102	7.170748e-01
2419	C9orf103	1
2420	C9orf106	1
2421	C9orf11	1
2422	C9orf114	1
2423	C9orf116	1
2424	C9orf117	1
2425	C9orf119	1.572959e-01
2426	C9orf123	1
2427	C9orf125	1.779816e-01
2428	C9orf128	1
2429	C9orf129	1
2430	C9orf131	9.807615e-01
2431	C9orf135	1
2432	C9orf139	4.117152e-01
2433	C9orf140	3.434056e-01
2434	C9orf142	1
2435	C9orf150	1.928556e-01
2436	C9orf152	1
2437	C9orf153	1
2438	C9orf156	9.389533e-01
2439	C9orf16	1
2440	C9orf163	1
2441	C9orf167	1
2442	C9orf170	1
2443	C9orf171	1.475529e-01
Done

Running MutSig 2:
Scatter job 27: processing genes 2353 - 2443
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C7orf58
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
Cons ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KS ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
C7orf58   10000 perm   3 sec   (3717 perm/sec)   p_kst 3.988000e-01   p_cons 2.485000e-01   p_joint 4.714000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf58.20_3215_10000_0.3988_0.2485_0.4714.png
                gene_name: C7orf58
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 3 percent done.
C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
Cons ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
KS ci ratio: 2.086125e-02	ci left: 7.710409e-01	ci right 7.873961e-01	k: 7793	n:10000
C9   10000 perm   2 sec   (4494 perm/sec)   p_kst 7.793000e-01   p_cons 2.143000e-01   p_joint 4.971000e-01

Outputting figure to mutsig2_images.part000000000027/C9.11_1724_10000_0.7793_0.2143_0.4971.png
                gene_name: C9
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 6 percent done.
C8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
Cons ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
C8B   10000 perm   2 sec   (5305 perm/sec)   p_kst 2.890000e-02   p_cons 8.199000e-01   p_joint 6.810000e-02

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 1.298058e-02	ci left: 8.147559e-01	ci right 8.254509e-01	k: 16403	n:20000
KS ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
C8B   20000 perm   4 sec   (4665 perm/sec)   p_kst 3.060000e-02   p_cons 8.201500e-01   p_joint 8.040000e-02

Joint ci ratio: 8.074826e-02	ci left: 6.988485e-02	ci right 7.579819e-02	k: 2184	n:30000
Cons ci ratio: 1.078661e-02	ci left: 8.104581e-01	ci right 8.192809e-01	k: 24447	n:30000
KS ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
C8B   30000 perm   7 sec   (4458 perm/sec)   p_kst 3.033333e-02   p_cons 8.149000e-01   p_joint 7.280000e-02

Joint ci ratio: 6.010185e-02	ci left: 9.322861e-02	ci right 9.903018e-02	k: 3844	n:40000
Cons ci ratio: 9.414120e-03	ci left: 8.086903e-01	ci right 8.163643e-01	k: 32502	n:40000
KS ci ratio: 1.092623e-01	ci left: 2.946915e-02	ci right 3.289936e-02	k: 1246	n:40000
C8B   40000 perm   9 sec   (4328 perm/sec)   p_kst 3.115000e-02   p_cons 8.125500e-01   p_joint 9.610000e-02

Joint ci ratio: 5.583936e-02	ci left: 8.720919e-02	ci right 9.223856e-02	k: 4485	n:50000
Cons ci ratio: 8.459722e-03	ci left: 8.076612e-01	ci right 8.145427e-01	k: 40556	n:50000
KS ci ratio: 9.870388e-02	ci left: 2.906861e-02	ci right 3.210621e-02	k: 1528	n:50000
C8B   50000 perm   12 sec   (4216 perm/sec)   p_kst 3.056000e-02   p_cons 8.111200e-01   p_joint 8.970000e-02

Outputting figure to mutsig2_images.part000000000027/C8B.9_1824_50000_0.03056_0.81112_0.0897.png
                gene_name: C8B
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 9 percent done.
C8orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
Cons ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
KS ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
C8orf80   10000 perm   2 sec   (4707 perm/sec)   p_kst 2.285000e-01   p_cons 7.620000e-02   p_joint 1.270000e-01

Joint ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
Cons ci ratio: 1.018151e-01	ci left: 6.547640e-02	ci right 7.254953e-02	k: 1379	n:20000
KS ci ratio: 5.345536e-02	ci left: 2.062041e-01	ci right 2.175798e-01	k: 4237	n:20000
C8orf80   20000 perm   5 sec   (4238 perm/sec)   p_kst 2.118500e-01   p_cons 6.895000e-02   p_joint 1.016500e-01

Joint ci ratio: 8.221867e-02	ci left: 6.753021e-02	ci right 7.335331e-02	k: 2112	n:30000
Cons ci ratio: 8.056943e-02	ci left: 7.017925e-02	ci right 7.610373e-02	k: 2193	n:30000
KS ci ratio: 4.351170e-02	ci left: 2.082791e-01	ci right 2.175766e-01	k: 6387	n:30000
C8orf80   30000 perm   7 sec   (4043 perm/sec)   p_kst 2.129000e-01   p_cons 7.310000e-02   p_joint 7.040000e-02

Outputting figure to mutsig2_images.part000000000027/C8orf80.9_2463_30000_0.2129_0.0731_0.0704.png
                gene_name: C8orf80
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 12 percent done.
C8orf37
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
Cons ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
KS ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
C8orf37   10000 perm   2 sec   (5422 perm/sec)   p_kst 2.300000e-01   p_cons 5.187000e-01   p_joint 3.347000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf37.6_648_10000_0.23_0.5187_0.3347.png
                gene_name: C8orf37
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
C8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
KS ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
C8A   10000 perm   2 sec   (4794 perm/sec)   p_kst 2.424000e-01   p_cons 9.550000e-02   p_joint 7.990000e-02

Joint ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 4.915000e-02	ci left: 2.353335e-01	ci right 2.472418e-01	k: 4825	n:20000
C8A   20000 perm   5 sec   (4364 perm/sec)   p_kst 2.412500e-01   p_cons 9.370000e-02   p_joint 1.013000e-01

Outputting figure to mutsig2_images.part000000000027/C8A.6_1799_20000_0.24125_0.0937_0.1013.png
                gene_name: C8A
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
C7orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
Cons ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
C7orf63   10000 perm   2 sec   (4936 perm/sec)   p_kst 2.161000e-01   p_cons 9.644000e-01   p_joint 3.800000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf63.5_2918_10000_0.2161_0.9644_0.38.png
                gene_name: C7orf63
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 22 percent done.
C7orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
Cons ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
KS ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
C7orf64   10000 perm   2 sec   (6067 perm/sec)   p_kst 8.555000e-01   p_cons 1.802000e-01   p_joint 4.649000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf64.5_1124_10000_0.8555_0.1802_0.4649.png
                gene_name: C7orf64
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
C8orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
KS ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
C8orf74   10000 perm   2 sec   (5324 perm/sec)   p_kst 1.124000e-01   p_cons 1.850000e-01   p_joint 2.062000e-01

Joint ci ratio: 7.939116e-02	ci left: 1.043201e-01	ci right 1.129941e-01	k: 2172	n:20000
Cons ci ratio: 5.723096e-02	ci left: 1.845340e-01	ci right 1.954563e-01	k: 3799	n:20000
KS ci ratio: 7.761917e-02	ci left: 1.086930e-01	ci right 1.175199e-01	k: 2261	n:20000
C8orf74   20000 perm   4 sec   (4768 perm/sec)   p_kst 1.130500e-01   p_cons 1.899500e-01   p_joint 1.086000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf74.5_901_20000_0.11305_0.18995_0.1086.png
                gene_name: C8orf74
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 28 percent done.
C8orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
Cons ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
KS ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
C8orf84   10000 perm   2 sec   (6064 perm/sec)   p_kst 8.480000e-02   p_cons 3.700000e-02   p_joint 4.420000e-02

Joint ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
Cons ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
KS ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
C8orf84   20000 perm   4 sec   (5299 perm/sec)   p_kst 8.540000e-02   p_cons 3.725000e-02   p_joint 2.120000e-02

Joint ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
Cons ci ratio: 1.167772e-01	ci left: 3.408229e-02	ci right 3.834147e-02	k: 1085	n:30000
KS ci ratio: 7.371831e-02	ci left: 8.294929e-02	ci right 8.933112e-02	k: 2583	n:30000
C8orf84   30000 perm   6 sec   (4995 perm/sec)   p_kst 8.610000e-02   p_cons 3.616667e-02   p_joint 3.263333e-02

Joint ci ratio: 1.507404e-01	ci left: 1.537059e-02	ci right 1.790028e-02	k: 664	n:40000
Cons ci ratio: 1.013869e-01	ci left: 3.419564e-02	ci right 3.787211e-02	k: 1440	n:40000
KS ci ratio: 6.521170e-02	ci left: 8.014185e-02	ci right 8.556889e-02	k: 3313	n:40000
C8orf84   40000 perm   8 sec   (4816 perm/sec)   p_kst 8.282500e-02   p_cons 3.600000e-02   p_joint 1.660000e-02

Joint ci ratio: 1.154435e-01	ci left: 2.123730e-02	ci right 2.385853e-02	k: 1126	n:50000
Cons ci ratio: 9.410386e-02	ci left: 3.195948e-02	ci right 3.513498e-02	k: 1676	n:50000
KS ci ratio: 5.799586e-02	ci left: 8.128680e-02	ci right 8.616166e-02	k: 4185	n:50000
C8orf84   50000 perm   11 sec   (4679 perm/sec)   p_kst 8.370000e-02   p_cons 3.352000e-02   p_joint 2.252000e-02

Joint ci ratio: 1.196201e-01	ci left: 1.653056e-02	ci right 1.864981e-02	k: 1054	n:60000
Cons ci ratio: 8.631394e-02	ci left: 3.179706e-02	ci right 3.468165e-02	k: 1993	n:60000
KS ci ratio: 5.308248e-02	ci left: 8.110076e-02	ci right 8.553964e-02	k: 4998	n:60000
C8orf84   60000 perm   13 sec   (4564 perm/sec)   p_kst 8.330000e-02   p_cons 3.321667e-02   p_joint 1.756667e-02

Joint ci ratio: 1.046316e-01	ci left: 1.862766e-02	ci right 2.069814e-02	k: 1375	n:70000
Cons ci ratio: 7.982849e-02	ci left: 3.196909e-02	ci right 3.464120e-02	k: 2330	n:70000
KS ci ratio: 4.902195e-02	ci left: 8.164447e-02	ci right 8.576154e-02	k: 5858	n:70000
C8orf84   70000 perm   16 sec   (4460 perm/sec)   p_kst 8.368571e-02   p_cons 3.328571e-02   p_joint 1.964286e-02

Joint ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
Cons ci ratio: 7.199032e-02	ci left: 3.444946e-02	ci right 3.703434e-02	k: 2858	n:80000
KS ci ratio: 4.568483e-02	ci left: 8.234646e-02	ci right 8.620875e-02	k: 6741	n:80000
C8orf84   80000 perm   18 sec   (4351 perm/sec)   p_kst 8.426250e-02   p_cons 3.572500e-02   p_joint 1.988750e-02

Outputting figure to mutsig2_images.part000000000027/C8orf84.5_815_80000_0.084263_0.035725_0.019887.png
                gene_name: C8orf84
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 31 percent done.
C9orf131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
C9orf131   10000 perm   2 sec   (4998 perm/sec)   p_kst 2.988000e-01   p_cons 4.618000e-01   p_joint 5.386000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf131.5_3264_10000_0.2988_0.4618_0.5386.png
                gene_name: C9orf131
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 34 percent done.
C9orf171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643060e-02	ci left: 8.434611e-01	ci right 8.575341e-01	k: 8506	n:10000
Cons ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
KS ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
C9orf171   10000 perm   2 sec   (5434 perm/sec)   p_kst 7.225000e-01   p_cons 5.251000e-01   p_joint 8.506000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf171.5_991_10000_0.7225_0.5251_0.8506.png
                gene_name: C9orf171
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 38 percent done.
C7orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
KS ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
C7orf34   10000 perm   2 sec   (5890 perm/sec)   p_kst 7.351000e-01   p_cons 5.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf34.4_452_10000_0.7351_0.5977_1.png
                gene_name: C7orf34
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
C8orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
KS ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
C8orf41   10000 perm   2 sec   (5476 perm/sec)   p_kst 2.827000e-01   p_cons 7.450000e-02   p_joint 1.630000e-01

Joint ci ratio: 7.308482e-02	ci left: 1.211352e-01	ci right 1.303739e-01	k: 2514	n:20000
Cons ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
KS ci ratio: 4.443735e-02	ci left: 2.738343e-01	ci right 2.863297e-01	k: 5601	n:20000
C8orf41   20000 perm   4 sec   (4918 perm/sec)   p_kst 2.800500e-01   p_cons 7.485000e-02   p_joint 1.257000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf41.4_1555_20000_0.28005_0.07485_0.1257.png
                gene_name: C8orf41
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 44 percent done.
C9orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
C9orf125   10000 perm   2 sec   (5733 perm/sec)   p_kst 2.610000e-02   p_cons 1.681000e-01   p_joint 5.630000e-02

Joint ci ratio: 1.232388e-01	ci left: 4.517535e-02	ci right 5.115689e-02	k: 962	n:20000
Cons ci ratio: 6.063483e-02	ci left: 1.675831e-01	ci right 1.781122e-01	k: 3456	n:20000
KS ci ratio: 1.688184e-01	ci left: 2.403039e-02	ci right 2.850878e-02	k: 524	n:20000
C9orf125   20000 perm   4 sec   (5101 perm/sec)   p_kst 2.620000e-02   p_cons 1.728000e-01   p_joint 4.810000e-02

Joint ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
Cons ci ratio: 5.010822e-02	ci left: 1.651709e-01	ci right 1.736933e-01	k: 5082	n:30000
KS ci ratio: 1.360332e-01	ci left: 2.509845e-02	ci right 2.879393e-02	k: 807	n:30000
C9orf125   30000 perm   6 sec   (4840 perm/sec)   p_kst 2.690000e-02   p_cons 1.694000e-01   p_joint 5.910000e-02

Joint ci ratio: 7.775065e-02	ci left: 5.742220e-02	ci right 6.209197e-02	k: 2389	n:40000
Cons ci ratio: 4.441011e-02	ci left: 1.593923e-01	ci right 1.666567e-01	k: 6520	n:40000
KS ci ratio: 1.185648e-01	ci left: 2.502076e-02	ci right 2.819847e-02	k: 1063	n:40000
C9orf125   40000 perm   9 sec   (4672 perm/sec)   p_kst 2.657500e-02   p_cons 1.630000e-01   p_joint 5.972500e-02

Joint ci ratio: 7.279222e-02	ci left: 5.282102e-02	ci right 5.683086e-02	k: 2740	n:50000
Cons ci ratio: 3.974862e-02	ci left: 1.595935e-01	ci right 1.660857e-01	k: 8141	n:50000
KS ci ratio: 1.052377e-01	ci left: 2.557733e-02	ci right 2.843794e-02	k: 1349	n:50000
C9orf125   50000 perm   11 sec   (4538 perm/sec)   p_kst 2.698000e-02   p_cons 1.628200e-01   p_joint 5.480000e-02

Joint ci ratio: 9.048117e-02	ci left: 2.895917e-02	ci right 3.171984e-02	k: 1819	n:60000
Cons ci ratio: 3.537967e-02	ci left: 1.668366e-01	ci right 1.728621e-01	k: 10190	n:60000
KS ci ratio: 9.693300e-02	ci left: 2.524570e-02	ci right 2.783370e-02	k: 1591	n:60000
C9orf125   60000 perm   14 sec   (4438 perm/sec)   p_kst 2.651667e-02   p_cons 1.698333e-01   p_joint 3.031667e-02

Outputting figure to mutsig2_images.part000000000027/C9orf125.4_1216_60000_0.026517_0.16983_0.030317.png
                gene_name: C9orf125
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 47 percent done.
C7orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
Cons ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
KS ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
C7orf26   10000 perm   2 sec   (5826 perm/sec)   p_kst 1.032000e-01   p_cons 5.348000e-01   p_joint 1.967000e-01

Joint ci ratio: 6.543162e-02	ci left: 1.471488e-01	ci right 1.571526e-01	k: 3042	n:20000
Cons ci ratio: 2.584771e-02	ci left: 5.279077e-01	ci right 5.417822e-01	k: 10697	n:20000
KS ci ratio: 8.124902e-02	ci left: 9.999854e-02	ci right 1.085169e-01	k: 2084	n:20000
C7orf26   20000 perm   4 sec   (5122 perm/sec)   p_kst 1.042000e-01   p_cons 5.348500e-01   p_joint 1.521000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf26.3_1374_20000_0.1042_0.53485_0.1521.png
                gene_name: C7orf26
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 50 percent done.
C7orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
Cons ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
C7orf27   10000 perm   2 sec   (5419 perm/sec)   p_kst 4.158000e-01   p_cons 4.620000e-02   p_joint 2.421000e-01

Joint ci ratio: 5.421092e-02	ci left: 2.016008e-01	ci right 2.128844e-01	k: 4144	n:20000
Cons ci ratio: 1.284389e-01	ci left: 4.163516e-02	ci right 4.739821e-02	k: 889	n:20000
KS ci ratio: 3.332707e-02	ci left: 4.020253e-01	ci right 4.157012e-01	k: 8177	n:20000
C7orf27   20000 perm   4 sec   (4791 perm/sec)   p_kst 4.088500e-01   p_cons 4.445000e-02   p_joint 2.072000e-01

Joint ci ratio: 6.351345e-02	ci left: 1.090769e-01	ci right 1.162650e-01	k: 3379	n:30000
Cons ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
KS ci ratio: 2.737715e-02	ci left: 4.003691e-01	ci right 4.115158e-01	k: 12178	n:30000
C7orf27   30000 perm   7 sec   (4564 perm/sec)   p_kst 4.059333e-01   p_cons 4.340000e-02   p_joint 1.126333e-01

Joint ci ratio: 4.954385e-02	ci left: 1.319621e-01	ci right 1.386909e-01	k: 5412	n:40000
Cons ci ratio: 9.152281e-02	ci left: 4.183960e-02	ci right 4.587696e-02	k: 1753	n:40000
KS ci ratio: 2.367449e-02	ci left: 4.018307e-01	ci right 4.114829e-01	k: 16266	n:40000
C7orf27   40000 perm   9 sec   (4410 perm/sec)   p_kst 4.066500e-01   p_cons 4.382500e-02   p_joint 1.353000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf27.3_2518_40000_0.40665_0.043825_0.1353.png
                gene_name: C7orf27
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 53 percent done.
C7orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
Cons ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
KS ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
C7orf33   10000 perm   2 sec   (6645 perm/sec)   p_kst 9.722000e-01   p_cons 3.276000e-01   p_joint 8.964000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf33.3_546_10000_0.9722_0.3276_0.8964.png
                gene_name: C7orf33
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 56 percent done.
C7orf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
Cons ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
C7orf36   10000 perm   2 sec   (6535 perm/sec)   p_kst 5.810000e-02   p_cons 4.810000e-02   p_joint 6.850000e-02

Joint ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
Cons ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
KS ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
C7orf36   20000 perm   4 sec   (5640 perm/sec)   p_kst 5.960000e-02   p_cons 4.720000e-02   p_joint 6.800000e-02

Joint ci ratio: 4.193503e-02	ci left: 2.208141e-01	ci right 2.303057e-01	k: 6766	n:30000
Cons ci ratio: 1.021763e-01	ci left: 4.437225e-02	ci right 4.918268e-02	k: 1402	n:30000
KS ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
C7orf36   30000 perm   6 sec   (5323 perm/sec)   p_kst 5.970000e-02   p_cons 4.673333e-02   p_joint 2.255333e-01

Joint ci ratio: 4.343497e-02	ci left: 1.654878e-01	ci right 1.728603e-01	k: 6766	n:40000
Cons ci ratio: 8.895422e-02	ci left: 4.423675e-02	ci right 4.837943e-02	k: 1851	n:40000
KS ci ratio: 7.806378e-02	ci left: 5.698044e-02	ci right 6.163379e-02	k: 2371	n:40000
C7orf36   40000 perm   8 sec   (5123 perm/sec)   p_kst 5.927500e-02   p_cons 4.627500e-02   p_joint 1.691500e-01

Outputting figure to mutsig2_images.part000000000027/C7orf36.3_693_40000_0.059275_0.046275_0.16915.png
                gene_name: C7orf36
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 59 percent done.
C7orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
Cons ci ratio: 2.167205e-02	ci left: 7.574741e-01	ci right 7.741708e-01	k: 7659	n:10000
KS ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
C7orf45   10000 perm   2 sec   (6180 perm/sec)   p_kst 3.110000e-02   p_cons 7.659000e-01   p_joint 2.035000e-01

Joint ci ratio: 5.518653e-02	ci left: 1.958606e-01	ci right 2.070263e-01	k: 4028	n:20000
Cons ci ratio: 1.605440e-02	ci left: 7.427284e-01	ci right 7.547992e-01	k: 14976	n:20000
KS ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
C7orf45   20000 perm   4 sec   (5344 perm/sec)   p_kst 3.120000e-02   p_cons 7.488000e-01   p_joint 2.014000e-01

Joint ci ratio: 5.619379e-02	ci left: 1.356307e-01	ci right 1.435059e-01	k: 4186	n:30000
Cons ci ratio: 1.313511e-02	ci left: 7.430801e-01	ci right 7.529385e-01	k: 22441	n:30000
KS ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
C7orf45   30000 perm   6 sec   (5058 perm/sec)   p_kst 3.226667e-02   p_cons 7.480333e-01   p_joint 1.395333e-01

Joint ci ratio: 6.905644e-02	ci left: 7.196979e-02	ci right 7.714218e-02	k: 2981	n:40000
Cons ci ratio: 1.073403e-02	ci left: 7.651144e-01	ci right 7.733965e-01	k: 30771	n:40000
KS ci ratio: 1.066423e-01	ci left: 3.092988e-02	ci right 3.443839e-02	k: 1306	n:40000
C7orf45   40000 perm   8 sec   (4868 perm/sec)   p_kst 3.265000e-02   p_cons 7.692750e-01   p_joint 7.452500e-02

Joint ci ratio: 6.160995e-02	ci left: 7.258774e-02	ci right 7.722176e-02	k: 3744	n:50000
Cons ci ratio: 9.588772e-03	ci left: 7.660041e-01	ci right 7.734045e-01	k: 38486	n:50000
KS ci ratio: 9.558830e-02	ci left: 3.098244e-02	ci right 3.411214e-02	k: 1626	n:50000
C7orf45   50000 perm   11 sec   (4751 perm/sec)   p_kst 3.252000e-02   p_cons 7.697200e-01   p_joint 7.488000e-02

Outputting figure to mutsig2_images.part000000000027/C7orf45.3_747_50000_0.03252_0.76972_0.07488.png
                gene_name: C7orf45
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.077 

Current progress: 62 percent done.
C7orf60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
Cons ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
KS ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
C7orf60   10000 perm   2 sec   (5945 perm/sec)   p_kst 5.427000e-01   p_cons 3.099000e-01   p_joint 7.719000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf60.3_1238_10000_0.5427_0.3099_0.7719.png
                gene_name: C7orf60
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 66 percent done.
C7orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
KS ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
C7orf66   10000 perm   2 sec   (6444 perm/sec)   p_kst 7.766000e-01   p_cons 8.187000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf66.3_356_10000_0.7766_0.8187_1.png
                gene_name: C7orf66
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
C8orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
C8orf45   10000 perm   2 sec   (5765 perm/sec)   p_kst 8.362000e-01   p_cons 8.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf45.3_2126_10000_0.8362_0.8641_1.png
                gene_name: C8orf45
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
C9orf102
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
KS ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
C9orf102   10000 perm   2 sec   (5720 perm/sec)   p_kst 2.026000e-01   p_cons 4.920000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf102.2_2195_10000_0.2026_0.492_0.4114.png
                gene_name: C9orf102
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
C9orf119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
C9orf119   10000 perm   2 sec   (6193 perm/sec)   p_kst 9.819000e-01   p_cons 2.087000e-01   p_joint 9.342000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf119.3_728_10000_0.9819_0.2087_0.9342.png
                gene_name: C9orf119
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 78 percent done.
C7orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
Cons ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
C7orf25   10000 perm   2 sec   (6226 perm/sec)   p_kst 3.720000e-01   p_cons 3.347000e-01   p_joint 4.691000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf25.2_1448_10000_0.372_0.3347_0.4691.png
                gene_name: C7orf25
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 81 percent done.
C8orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
C8orf22   10000 perm   1 sec   (7058 perm/sec)   p_kst 6.610000e-01   p_cons 4.991000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf22.2_262_10000_0.661_0.4991_1.png
                gene_name: C8orf22
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
C8orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648870e-02	ci left: 8.425440e-01	ci right 8.566516e-01	k: 8497	n:10000
Cons ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
KS ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
C8orf31   10000 perm   1 sec   (6960 perm/sec)   p_kst 3.119000e-01   p_cons 8.981000e-01   p_joint 8.497000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf31.2_415_10000_0.3119_0.8981_0.8497.png
                gene_name: C8orf31
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 88 percent done.
C8orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
C8orf33   10000 perm   1 sec   (6930 perm/sec)   p_kst 3.883000e-01   p_cons 8.200000e-03   p_joint 2.040000e-02

Joint ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
Cons ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KS ci ratio: 3.459349e-02	ci left: 3.841786e-01	ci right 3.977532e-01	k: 7819	n:20000
C8orf33   20000 perm   3 sec   (6004 perm/sec)   p_kst 3.909500e-01   p_cons 8.850000e-03   p_joint 1.915000e-02

Joint ci ratio: 2.361634e-01	ci left: 8.025163e-03	ci right 1.020483e-02	k: 272	n:30000
Cons ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
KS ci ratio: 2.815074e-02	ci left: 3.870348e-01	ci right 3.981193e-01	k: 11777	n:30000
C8orf33   30000 perm   5 sec   (5667 perm/sec)   p_kst 3.925667e-01   p_cons 8.433333e-03   p_joint 9.066667e-03

Joint ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
Cons ci ratio: 2.116838e-01	ci left: 7.599987e-03	ci right 9.422445e-03	k: 339	n:40000
KS ci ratio: 2.449462e-02	ci left: 3.855400e-01	ci right 3.951259e-01	k: 15613	n:40000
C8orf33   40000 perm   7 sec   (5439 perm/sec)   p_kst 3.903250e-01   p_cons 8.475000e-03   p_joint 1.025000e-02

Joint ci ratio: 1.663789e-01	ci left: 1.006589e-02	ci right 1.191154e-02	k: 548	n:50000
Cons ci ratio: 1.635410e-01	ci left: 1.043036e-02	ci right 1.230702e-02	k: 567	n:50000
KS ci ratio: 2.191187e-02	ci left: 3.859807e-01	ci right 3.945520e-01	k: 19513	n:50000
C8orf33   50000 perm   9 sec   (5265 perm/sec)   p_kst 3.902600e-01   p_cons 1.134000e-02   p_joint 1.096000e-02

Joint ci ratio: 1.475074e-01	ci left: 1.077463e-02	ci right 1.250642e-02	k: 697	n:60000
Cons ci ratio: 1.485881e-01	ci left: 1.061408e-02	ci right 1.233366e-02	k: 687	n:60000
KS ci ratio: 1.999975e-02	ci left: 3.864270e-01	ci right 3.942502e-01	k: 23420	n:60000
C8orf33   60000 perm   12 sec   (5118 perm/sec)   p_kst 3.903333e-01   p_cons 1.145000e-02   p_joint 1.161667e-02

Joint ci ratio: 1.355862e-01	ci left: 1.099939e-02	ci right 1.261289e-02	k: 825	n:70000
Cons ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
KS ci ratio: 1.850978e-02	ci left: 3.868834e-01	ci right 3.941257e-01	k: 27335	n:70000
C8orf33   70000 perm   14 sec   (4979 perm/sec)   p_kst 3.905000e-01   p_cons 1.160000e-02   p_joint 1.178571e-02

Joint ci ratio: 1.304428e-01	ci left: 1.043390e-02	ci right 1.190187e-02	k: 892	n:80000
Cons ci ratio: 1.279310e-01	ci left: 1.085741e-02	ci right 1.235333e-02	k: 927	n:80000
KS ci ratio: 1.727579e-02	ci left: 3.881779e-01	ci right 3.949549e-01	k: 31325	n:80000
C8orf33   80000 perm   16 sec   (4864 perm/sec)   p_kst 3.915625e-01   p_cons 1.158750e-02   p_joint 1.115000e-02

Joint ci ratio: 1.188980e-01	ci left: 1.122334e-02	ci right 1.265282e-02	k: 1073	n:90000
Cons ci ratio: 1.191228e-01	ci left: 1.118021e-02	ci right 1.260707e-02	k: 1069	n:90000
KS ci ratio: 1.631124e-02	ci left: 3.876879e-01	ci right 3.940747e-01	k: 35179	n:90000
C8orf33   90000 perm   19 sec   (4752 perm/sec)   p_kst 3.908778e-01   p_cons 1.187778e-02   p_joint 1.192222e-02

Joint ci ratio: 1.116347e-01	ci left: 1.149961e-02	ci right 1.286891e-02	k: 1217	n:100000
Cons ci ratio: 1.123370e-01	ci left: 1.135376e-02	ci right 1.271476e-02	k: 1202	n:100000
KS ci ratio: 1.547222e-02	ci left: 3.879138e-01	ci right 3.939725e-01	k: 39094	n:100000
C8orf33   100000 perm   22 sec   (4635 perm/sec)   p_kst 3.909400e-01   p_cons 1.202000e-02   p_joint 1.217000e-02

Joint ci ratio: 1.075751e-01	ci left: 1.128524e-02	ci right 1.257705e-02	k: 1311	n:110000
Cons ci ratio: 1.071215e-01	ci left: 1.138259e-02	ci right 1.267970e-02	k: 1322	n:110000
KS ci ratio: 1.474894e-02	ci left: 3.881601e-01	ci right 3.939366e-01	k: 43015	n:110000
C8orf33   110000 perm   24 sec   (4546 perm/sec)   p_kst 3.910455e-01   p_cons 1.201818e-02   p_joint 1.191818e-02

Joint ci ratio: 1.014733e-01	ci left: 1.165964e-02	ci right 1.291409e-02	k: 1473	n:120000
Cons ci ratio: 1.025349e-01	ci left: 1.141595e-02	ci right 1.265780e-02	k: 1443	n:120000
KS ci ratio: 1.412933e-02	ci left: 3.880045e-01	ci right 3.935341e-01	k: 46892	n:120000
C8orf33   120000 perm   27 sec   (4463 perm/sec)   p_kst 3.907667e-01   p_cons 1.202500e-02   p_joint 1.227500e-02

Joint ci ratio: 9.736389e-02	ci left: 1.171540e-02	ci right 1.292188e-02	k: 1600	n:130000
Cons ci ratio: 9.814264e-02	ci left: 1.152774e-02	ci right 1.272494e-02	k: 1575	n:130000
KS ci ratio: 1.356707e-02	ci left: 3.883921e-01	ci right 3.937051e-01	k: 50836	n:130000
C8orf33   130000 perm   30 sec   (4370 perm/sec)   p_kst 3.910462e-01   p_cons 1.211538e-02   p_joint 1.230769e-02

Outputting figure to mutsig2_images.part000000000027/C8orf33.2_710_130000_0.39105_0.012115_0.012308.png
                gene_name: C8orf33
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 91 percent done.
C8orf76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
C8orf76   10000 perm   2 sec   (6390 perm/sec)   p_kst 2.834000e-01   p_cons 5.350000e-02   p_joint 8.810000e-02

Joint ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
Cons ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
KS ci ratio: 4.357725e-02	ci left: 2.817304e-01	ci right 2.943313e-01	k: 5760	n:20000
C8orf76   20000 perm   4 sec   (5589 perm/sec)   p_kst 2.880000e-01   p_cons 5.285000e-02   p_joint 4.245000e-02

Joint ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
Cons ci ratio: 9.516112e-02	ci left: 5.098028e-02	ci right 5.610662e-02	k: 1605	n:30000
KS ci ratio: 3.536936e-02	ci left: 2.853333e-01	ci right 2.956406e-01	k: 8714	n:30000
C8orf76   30000 perm   6 sec   (5274 perm/sec)   p_kst 2.904667e-01   p_cons 5.350000e-02   p_joint 4.470000e-02

Joint ci ratio: 1.186794e-01	ci left: 2.497221e-02	ci right 2.814703e-02	k: 1061	n:40000
Cons ci ratio: 8.264358e-02	ci left: 5.104511e-02	ci right 5.547003e-02	k: 2129	n:40000
KS ci ratio: 3.058071e-02	ci left: 2.867008e-01	ci right 2.956295e-01	k: 11646	n:40000
C8orf76   40000 perm   8 sec   (5073 perm/sec)   p_kst 2.911500e-01   p_cons 5.322500e-02   p_joint 2.652500e-02

Joint ci ratio: 9.660563e-02	ci left: 3.033781e-02	ci right 3.343685e-02	k: 1593	n:50000
Cons ci ratio: 8.059067e-02	ci left: 4.335631e-02	ci right 4.701673e-02	k: 2258	n:50000
KS ci ratio: 2.738374e-02	ci left: 2.867022e-01	ci right 2.946822e-01	k: 14534	n:50000
C8orf76   50000 perm   10 sec   (4910 perm/sec)   p_kst 2.906800e-01   p_cons 4.516000e-02   p_joint 3.186000e-02

Outputting figure to mutsig2_images.part000000000027/C8orf76.2_1167_50000_0.29068_0.04516_0.03186.png
                gene_name: C8orf76
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 94 percent done.
C9orf139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
Cons ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
C9orf139   10000 perm   1 sec   (6792 perm/sec)   p_kst 2.910000e-02   p_cons 6.232000e-01   p_joint 3.704000e-01

Joint ci ratio: 4.307793e-02	ci left: 2.864493e-01	ci right 2.991110e-01	k: 5855	n:20000
Cons ci ratio: 2.165097e-02	ci left: 6.142844e-01	ci right 6.277804e-01	k: 12421	n:20000
KS ci ratio: 1.572061e-01	ci left: 2.777552e-02	ci right 3.256237e-02	k: 602	n:20000
C9orf139   20000 perm   3 sec   (5794 perm/sec)   p_kst 3.010000e-02   p_cons 6.210500e-01   p_joint 2.927500e-01

Joint ci ratio: 3.533793e-02	ci left: 2.856981e-01	ci right 2.960091e-01	k: 8725	n:30000
Cons ci ratio: 1.766259e-02	ci left: 6.159500e-01	ci right 6.269598e-01	k: 18644	n:30000
KS ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
C9orf139   30000 perm   5 sec   (5455 perm/sec)   p_kst 3.000000e-02   p_cons 6.214667e-01   p_joint 2.908333e-01

Joint ci ratio: 3.066799e-02	ci left: 2.855312e-01	ci right 2.944493e-01	k: 11599	n:40000
Cons ci ratio: 1.536119e-02	ci left: 6.146960e-01	ci right 6.242367e-01	k: 24779	n:40000
KS ci ratio: 1.119792e-01	ci left: 2.805811e-02	ci right 3.141062e-02	k: 1188	n:40000
C9orf139   40000 perm   8 sec   (5262 perm/sec)   p_kst 2.970000e-02   p_cons 6.194750e-01   p_joint 2.899750e-01

Joint ci ratio: 2.748635e-02	ci left: 2.851685e-01	ci right 2.931360e-01	k: 14457	n:50000
Cons ci ratio: 1.380358e-02	ci left: 6.130029e-01	ci right 6.215434e-01	k: 30864	n:50000
KS ci ratio: 9.924078e-02	ci left: 2.875630e-02	ci right 3.177856e-02	k: 1512	n:50000
C9orf139   50000 perm   10 sec   (5098 perm/sec)   p_kst 3.024000e-02   p_cons 6.172800e-01   p_joint 2.891400e-01

Outputting figure to mutsig2_images.part000000000027/C9orf139.2_581_50000_0.03024_0.61728_0.28914.png
                gene_name: C9orf139
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 97 percent done.
C9orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
KS ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
C9orf150   10000 perm   1 sec   (6769 perm/sec)   p_kst 6.617000e-01   p_cons 3.088000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf150.2_695_10000_0.6617_0.3088_1.png
                gene_name: C9orf150
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000027
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 27 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4421792: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000028> was used as the working directory.
Started at Wed Oct 24 17:33:57 2012
Results reported at Wed Oct 24 17:57:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000028.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000028.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 28  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000028.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1450.85 sec.
    Max Memory :      5375 MB
    Max Swap   :      7700 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
28
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 28
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 28: processing genes 2444 - 2533
Calculating significance of each gene.
Using projection method.
2444	C9orf172	8.105728e-01
2445	C9orf173	5.305608e-01
2446	C9orf21	1
2447	C9orf23	1
2448	C9orf24	6.961140e-01
2449	C9orf25	7.072130e-01
2450	C9orf3	5.162757e-01
2451	C9orf30	2.812231e-01
2452	C9orf37	1
2453	C9orf4	1
2454	C9orf40	1
2455	C9orf41	2.442084e-01
2456	C9orf43	1
2457	C9orf46	3.907194e-01
2458	C9orf47	1
2459	C9orf5	9.132049e-01
2460	C9orf50	6.979012e-01
2461	C9orf6	5.125442e-01
2462	C9orf64	2.744939e-01
2463	C9orf66	1
2464	C9orf68	3.243490e-01
2465	C9orf69	1
2466	C9orf7	1
2467	C9orf71	2.611577e-01
2468	C9orf72	8.048314e-01
2469	C9orf78	8.833880e-01
2470	C9orf79	3.081252e-01
2471	C9orf80	1
2472	C9orf82	3.213738e-01
2473	C9orf84	9.821150e-01
2474	C9orf85	3.388513e-01
2475	C9orf86	1
2476	C9orf89	1
2477	C9orf9	1
2478	C9orf91	1
2479	C9orf93	5.211867e-01
2480	C9orf95	1
2481	C9orf96	9.724736e-01
2482	C9orf98	1
2483	CA1	3.607305e-01
2484	CA10	2.914885e-01
2485	CA11	1
2486	CA12	1
2487	CA13	1
2488	CA14	6.713364e-01
2489	CA2	3.894819e-01
2490	CA3	1
2491	CA4	3.482771e-02
2492	CA5A	4.780898e-01
2493	CA5B	7.509171e-01
2494	CA6	7.861642e-01
2495	CA7	1
2496	CA8	1
2497	CA9	6.738150e-01
2498	CAB39	4.075838e-01
2499	CAB39L	6.179219e-01
2500	CABC1	7.384639e-01
2501	CABIN1	9.999687e-01
2502	CABLES1	5.740419e-01
2503	CABLES2	7.130767e-01
2504	CABP1	1
2505	CABP2	1
2506	CABP4	4.061454e-01
2507	CABP5	6.082583e-01
2508	CABP7	5.797663e-01
2509	CABYR	8.781230e-01
2510	CACHD1	2.946599e-01
2511	CACNA1A	9.828128e-01
2512	CACNA1B	6.562174e-01
2513	CACNA1C	1
2514	CACNA1D	6.537397e-01
2515	CACNA1E	1
2516	CACNA1F	6.895367e-01
2517	CACNA1G	9.991472e-01
2518	CACNA1H	8.196869e-01
2519	CACNA1I	1
2520	CACNA1S	9.997261e-01
2521	CACNA2D1	9.086953e-01
2522	CACNA2D2	9.995255e-01
2523	CACNA2D3	1.702768e-02
2524	CACNA2D4	9.220557e-01
2525	CACNB1	9.812074e-01
2526	CACNB2	5.389889e-01
2527	CACNB3	1
2528	CACNB4	9.691385e-01
2529	CACNG1	7.665412e-01
2530	CACNG2	8.791956e-01
2531	CACNG3	4.497035e-03
2532	CACNG4	1
2533	CACNG5	6.682420e-01
Done

Running MutSig 2:
Scatter job 28: processing genes 2444 - 2533
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CACNA1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
KS ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
CACNA1E   10000 perm   3 sec   (3203 perm/sec)   p_kst 2.357000e-01   p_cons 2.162000e-01   p_joint 1.655000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1E.50_7001_10000_0.2357_0.2162_0.1655.png
                gene_name: CACNA1E
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 2 percent done.
CACNA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
Cons ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
KS ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
CACNA1C   10000 perm   3 sec   (3698 perm/sec)   p_kst 8.787000e-01   p_cons 7.406000e-01   p_joint 9.590000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1C.26_7314_10000_0.8787_0.7406_0.959.png
                gene_name: CACNA1C
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 4 percent done.
CACNA2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
Cons ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
KS ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
CACNA2D1   10000 perm   2 sec   (4832 perm/sec)   p_kst 6.423000e-01   p_cons 5.236000e-01   p_joint 8.480000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D1.19_3432_10000_0.6423_0.5236_0.848.png
                gene_name: CACNA2D1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
CACNA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
Cons ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
CACNA1D   10000 perm   2 sec   (4139 perm/sec)   p_kst 5.900000e-02   p_cons 1.130000e-02   p_joint 2.590000e-02

Joint ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
Cons ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
KS ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
CACNA1D   20000 perm   5 sec   (3813 perm/sec)   p_kst 5.595000e-02   p_cons 1.115000e-02   p_joint 2.290000e-02

Joint ci ratio: 1.894727e-01	ci left: 1.273282e-02	ci right 1.542916e-02	k: 421	n:30000
Cons ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
KS ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
CACNA1D   30000 perm   8 sec   (3676 perm/sec)   p_kst 5.680000e-02   p_cons 1.053333e-02   p_joint 1.403333e-02

Joint ci ratio: 1.402710e-01	ci left: 1.780527e-02	ci right 2.051517e-02	k: 765	n:40000
Cons ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
KS ci ratio: 7.866486e-02	ci left: 5.614612e-02	ci right 6.076824e-02	k: 2337	n:40000
CACNA1D   40000 perm   11 sec   (3585 perm/sec)   p_kst 5.842500e-02   p_cons 1.067500e-02   p_joint 1.912500e-02

Joint ci ratio: 1.692061e-01	ci left: 9.720862e-03	ci right 1.153663e-02	k: 530	n:50000
Cons ci ratio: 1.676181e-01	ci left: 9.912512e-03	ci right 1.174495e-02	k: 540	n:50000
KS ci ratio: 7.036653e-02	ci left: 5.637992e-02	ci right 6.051153e-02	k: 2921	n:50000
CACNA1D   50000 perm   14 sec   (3516 perm/sec)   p_kst 5.842000e-02   p_cons 1.080000e-02   p_joint 1.060000e-02

Joint ci ratio: 1.264404e-01	ci left: 1.476890e-02	ci right 1.677834e-02	k: 945	n:60000
Cons ci ratio: 1.529187e-01	ci left: 1.000439e-02	ci right 1.167676e-02	k: 649	n:60000
KS ci ratio: 6.344574e-02	ci left: 5.791570e-02	ci right 6.172701e-02	k: 3588	n:60000
CACNA1D   60000 perm   17 sec   (3451 perm/sec)   p_kst 5.980000e-02   p_cons 1.081667e-02   p_joint 1.575000e-02

Joint ci ratio: 1.328463e-01	ci left: 1.146897e-02	ci right 1.311468e-02	k: 859	n:70000
Cons ci ratio: 1.430446e-01	ci left: 9.854552e-03	ci right 1.138642e-02	k: 742	n:70000
KS ci ratio: 5.868848e-02	ci left: 5.815320e-02	ci right 6.168338e-02	k: 4193	n:70000
CACNA1D   70000 perm   21 sec   (3395 perm/sec)   p_kst 5.990000e-02   p_cons 1.060000e-02   p_joint 1.227143e-02

Joint ci ratio: 1.270338e-01	ci left: 1.101478e-02	ci right 1.252094e-02	k: 940	n:80000
Cons ci ratio: 1.335000e-01	ci left: 9.950239e-03	ci right 1.138558e-02	k: 852	n:80000
KS ci ratio: 5.494776e-02	ci left: 5.816664e-02	ci right 6.146538e-02	k: 4784	n:80000
CACNA1D   80000 perm   24 sec   (3346 perm/sec)   p_kst 5.980000e-02   p_cons 1.065000e-02   p_joint 1.175000e-02

Joint ci ratio: 1.181213e-01	ci left: 1.137434e-02	ci right 1.281292e-02	k: 1087	n:90000
Cons ci ratio: 1.263735e-01	ci left: 9.908903e-03	ci right 1.125626e-02	k: 951	n:90000
KS ci ratio: 5.175480e-02	ci left: 5.836928e-02	ci right 6.148138e-02	k: 5392	n:90000
CACNA1D   90000 perm   27 sec   (3300 perm/sec)   p_kst 5.991111e-02   p_cons 1.056667e-02   p_joint 1.207778e-02

Joint ci ratio: 1.176482e-01	ci left: 1.033363e-02	ci right 1.163497e-02	k: 1097	n:100000
Cons ci ratio: 1.206270e-01	ci left: 9.819261e-03	ci right 1.108937e-02	k: 1044	n:100000
KS ci ratio: 4.906943e-02	ci left: 5.851608e-02	ci right 6.146951e-02	k: 5998	n:100000
CACNA1D   100000 perm   31 sec   (3256 perm/sec)   p_kst 5.998000e-02   p_cons 1.044000e-02   p_joint 1.097000e-02

Joint ci ratio: 1.076166e-01	ci left: 1.127639e-02	ci right 1.256772e-02	k: 1310	n:110000
Cons ci ratio: 1.146361e-01	ci left: 9.914863e-03	ci right 1.112933e-02	k: 1156	n:110000
KS ci ratio: 4.694083e-02	ci left: 5.821703e-02	ci right 6.102443e-02	k: 6557	n:110000
CACNA1D   110000 perm   34 sec   (3214 perm/sec)   p_kst 5.960909e-02   p_cons 1.050909e-02   p_joint 1.190909e-02

Joint ci ratio: 1.090671e-01	ci left: 1.006880e-02	ci right 1.123836e-02	k: 1277	n:120000
Cons ci ratio: 1.099841e-01	ci left: 9.898547e-03	ci right 1.105863e-02	k: 1256	n:120000
KS ci ratio: 4.495975e-02	ci left: 5.823402e-02	ci right 6.092064e-02	k: 7148	n:120000
CACNA1D   120000 perm   38 sec   (3173 perm/sec)   p_kst 5.956667e-02   p_cons 1.046667e-02   p_joint 1.064167e-02

Joint ci ratio: 1.060141e-01	ci left: 9.855624e-03	ci right 1.096638e-02	k: 1352	n:130000
Cons ci ratio: 1.051923e-01	ci left: 1.001294e-02	ci right 1.113213e-02	k: 1373	n:130000
KS ci ratio: 4.305352e-02	ci left: 5.865409e-02	ci right 6.124250e-02	k: 7792	n:130000
CACNA1D   130000 perm   41 sec   (3133 perm/sec)   p_kst 5.993846e-02   p_cons 1.056154e-02   p_joint 1.040000e-02

Joint ci ratio: 9.156745e-02	ci left: 1.232940e-02	ci right 1.351947e-02	k: 1808	n:140000
Cons ci ratio: 1.011482e-01	ci left: 1.007710e-02	ci right 1.115759e-02	k: 1485	n:140000
KS ci ratio: 4.146498e-02	ci left: 5.876154e-02	ci right 6.125672e-02	k: 8400	n:140000
CACNA1D   140000 perm   45 sec   (3095 perm/sec)   p_kst 6.000000e-02   p_cons 1.060714e-02   p_joint 1.291429e-02

Joint ci ratio: 9.473084e-02	ci left: 1.075170e-02	ci right 1.182732e-02	k: 1692	n:150000
Cons ci ratio: 9.825446e-02	ci left: 9.983813e-03	ci right 1.102191e-02	k: 1574	n:150000
KS ci ratio: 4.010658e-02	ci left: 5.867127e-02	ci right 6.107911e-02	k: 8980	n:150000
CACNA1D   150000 perm   49 sec   (3055 perm/sec)   p_kst 5.986667e-02   p_cons 1.049333e-02   p_joint 1.128000e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1D.17_6850_150000_0.059867_0.010493_0.01128.png
                gene_name: CACNA1D
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0100 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 9 percent done.
CACNA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
Cons ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
KS ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
CACNA1B   10000 perm   2 sec   (4004 perm/sec)   p_kst 4.952000e-01   p_cons 1.197000e-01   p_joint 3.179000e-01

Joint ci ratio: 4.468658e-02	ci left: 2.716000e-01	ci right 2.840647e-01	k: 5556	n:20000
Cons ci ratio: 7.698740e-02	ci left: 1.103149e-01	ci right 1.191974e-01	k: 2294	n:20000
KS ci ratio: 2.802586e-02	ci left: 4.874971e-01	ci right 5.014045e-01	k: 9889	n:20000
CACNA1B   20000 perm   6 sec   (3459 perm/sec)   p_kst 4.944500e-01   p_cons 1.147000e-01   p_joint 2.778000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1B.15_7204_20000_0.49445_0.1147_0.2778.png
                gene_name: CACNA1B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
C9orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
Cons ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
KS ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
C9orf79   10000 perm   2 sec   (4943 perm/sec)   p_kst 3.572000e-01   p_cons 4.257000e-01   p_joint 4.361000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf79.14_4354_10000_0.3572_0.4257_0.4361.png
                gene_name: C9orf79
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 13 percent done.
CACNA2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
CACNA2D3   10000 perm   2 sec   (4791 perm/sec)   p_kst 3.362000e-01   p_cons 2.100000e-03   p_joint 8.400000e-03

Joint ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
Cons ci ratio: 6.527288e-01	ci left: 1.219232e-03	ci right 2.432994e-03	k: 35	n:20000
KS ci ratio: 3.850766e-02	ci left: 3.346775e-01	ci right 3.478687e-01	k: 6825	n:20000
CACNA2D3   20000 perm   5 sec   (4414 perm/sec)   p_kst 3.412500e-01   p_cons 1.750000e-03   p_joint 5.850000e-03

Joint ci ratio: 2.331652e-01	ci left: 8.244884e-03	ci right 1.045170e-02	k: 279	n:30000
Cons ci ratio: 5.187146e-01	ci left: 1.410359e-03	ci right 2.423346e-03	k: 56	n:30000
KS ci ratio: 3.158642e-02	ci left: 3.338418e-01	ci right 3.445894e-01	k: 10176	n:30000
CACNA2D3   30000 perm   7 sec   (4245 perm/sec)   p_kst 3.392000e-01   p_cons 1.866667e-03   p_joint 9.300000e-03

Joint ci ratio: 2.089128e-01	ci left: 7.813225e-03	ci right 9.659157e-03	k: 348	n:40000
Cons ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
KS ci ratio: 2.620157e-02	ci left: 3.540725e-01	ci right 3.634980e-01	k: 14351	n:40000
CACNA2D3   40000 perm   10 sec   (4145 perm/sec)   p_kst 3.587750e-01   p_cons 1.750000e-03   p_joint 8.700000e-03

Joint ci ratio: 2.458216e-01	ci left: 4.438180e-03	ci right 5.700334e-03	k: 252	n:50000
Cons ci ratio: 4.223366e-01	ci left: 1.358118e-03	ci right 2.101654e-03	k: 85	n:50000
KS ci ratio: 2.450024e-02	ci left: 3.344515e-01	ci right 3.427673e-01	k: 16930	n:50000
CACNA2D3   50000 perm   12 sec   (4060 perm/sec)   p_kst 3.386000e-01   p_cons 1.700000e-03   p_joint 5.040000e-03

Joint ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
Cons ci ratio: 4.175634e-01	ci left: 1.161549e-03	ci right 1.788267e-03	k: 87	n:60000
KS ci ratio: 2.233580e-02	ci left: 3.354113e-01	ci right 3.430043e-01	k: 20352	n:60000
CACNA2D3   60000 perm   15 sec   (3993 perm/sec)   p_kst 3.392000e-01   p_cons 1.450000e-03   p_joint 5.066667e-03

Joint ci ratio: 2.214296e-01	ci left: 3.963672e-03	ci right 4.963803e-03	k: 311	n:70000
Cons ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
KS ci ratio: 2.068695e-02	ci left: 3.355214e-01	ci right 3.425491e-01	k: 23732	n:70000
CACNA2D3   70000 perm   18 sec   (3926 perm/sec)   p_kst 3.390286e-01   p_cons 1.414286e-03   p_joint 4.442857e-03

Joint ci ratio: 1.723464e-01	ci left: 5.871090e-03	ci right 6.990157e-03	k: 513	n:80000
Cons ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
KS ci ratio: 1.937812e-02	ci left: 3.351208e-01	ci right 3.416909e-01	k: 27072	n:80000
CACNA2D3   80000 perm   21 sec   (3867 perm/sec)   p_kst 3.384000e-01   p_cons 1.450000e-03   p_joint 6.412500e-03

Joint ci ratio: 1.648372e-01	ci left: 5.729547e-03	ci right 6.769329e-03	k: 561	n:90000
Cons ci ratio: 3.383824e-01	ci left: 1.237454e-03	ci right 1.751094e-03	k: 133	n:90000
KS ci ratio: 1.826176e-02	ci left: 3.355080e-01	ci right 3.417025e-01	k: 30474	n:90000
CACNA2D3   90000 perm   24 sec   (3812 perm/sec)   p_kst 3.386000e-01   p_cons 1.477778e-03   p_joint 6.233333e-03

Joint ci ratio: 1.674553e-01	ci left: 4.993500e-03	ci right 5.915542e-03	k: 544	n:100000
Cons ci ratio: 3.264298e-01	ci left: 1.205362e-03	ci right 1.684305e-03	k: 143	n:100000
KS ci ratio: 1.729763e-02	ci left: 3.363651e-01	ci right 3.422442e-01	k: 33930	n:100000
CACNA2D3   100000 perm   27 sec   (3756 perm/sec)   p_kst 3.393000e-01   p_cons 1.430000e-03   p_joint 5.440000e-03

Joint ci ratio: 1.891105e-01	ci left: 3.522933e-03	ci right 4.267236e-03	k: 427	n:110000
Cons ci ratio: 3.126253e-01	ci left: 1.204492e-03	ci right 1.658812e-03	k: 156	n:110000
KS ci ratio: 1.648198e-02	ci left: 3.367921e-01	ci right 3.423982e-01	k: 37355	n:110000
CACNA2D3   110000 perm   30 sec   (3704 perm/sec)   p_kst 3.395909e-01   p_cons 1.418182e-03   p_joint 3.881818e-03

Joint ci ratio: 1.878247e-01	ci left: 3.276956e-03	ci right 3.964043e-03	k: 433	n:120000
Cons ci ratio: 3.040392e-01	ci left: 1.173313e-03	ci right 1.601367e-03	k: 165	n:120000
KS ci ratio: 1.577531e-02	ci left: 3.370534e-01	ci right 3.424210e-01	k: 40768	n:120000
CACNA2D3   120000 perm   33 sec   (3656 perm/sec)   p_kst 3.397333e-01   p_cons 1.375000e-03   p_joint 3.608333e-03

Joint ci ratio: 1.820499e-01	ci left: 3.230290e-03	ci right 3.884471e-03	k: 461	n:130000
Cons ci ratio: 2.944435e-01	ci left: 1.161322e-03	ci right 1.569135e-03	k: 176	n:130000
KS ci ratio: 1.514797e-02	ci left: 3.374093e-01	ci right 3.425670e-01	k: 44198	n:130000
CACNA2D3   130000 perm   36 sec   (3607 perm/sec)   p_kst 3.399846e-01   p_cons 1.353846e-03   p_joint 3.546154e-03

Joint ci ratio: 1.644359e-01	ci left: 3.710352e-03	ci right 4.381874e-03	k: 565	n:140000
Cons ci ratio: 2.841926e-01	ci left: 1.164491e-03	ci right 1.556629e-03	k: 189	n:140000
KS ci ratio: 1.461484e-02	ci left: 3.369551e-01	ci right 3.419230e-01	k: 47521	n:140000
CACNA2D3   140000 perm   39 sec   (3558 perm/sec)   p_kst 3.394357e-01   p_cons 1.350000e-03   p_joint 4.035714e-03

Joint ci ratio: 1.609288e-01	ci left: 3.622864e-03	ci right 4.263212e-03	k: 590	n:150000
Cons ci ratio: 2.770001e-01	ci left: 1.148834e-03	ci right 1.524201e-03	k: 199	n:150000
KS ci ratio: 1.412083e-02	ci left: 3.369903e-01	ci right 3.417893e-01	k: 50908	n:150000
CACNA2D3   150000 perm   43 sec   (3515 perm/sec)   p_kst 3.393867e-01   p_cons 1.326667e-03   p_joint 3.933333e-03

Joint ci ratio: 1.561173e-01	ci left: 3.618511e-03	ci right 4.237178e-03	k: 627	n:160000
Cons ci ratio: 2.696851e-01	ci left: 1.141070e-03	ci right 1.502389e-03	k: 210	n:160000
KS ci ratio: 1.366880e-02	ci left: 3.371857e-01	ci right 3.418326e-01	k: 54321	n:160000
CACNA2D3   160000 perm   46 sec   (3472 perm/sec)   p_kst 3.395063e-01   p_cons 1.312500e-03   p_joint 3.918750e-03

Joint ci ratio: 1.335663e-01	ci left: 4.704352e-03	ci right 5.383285e-03	k: 856	n:170000
Cons ci ratio: 2.629206e-01	ci left: 1.134334e-03	ci right 1.483030e-03	k: 221	n:170000
KS ci ratio: 1.327342e-02	ci left: 3.368259e-01	ci right 3.413325e-01	k: 57643	n:170000
CACNA2D3   170000 perm   50 sec   (3428 perm/sec)   p_kst 3.390765e-01   p_cons 1.300000e-03   p_joint 5.035294e-03

Joint ci ratio: 1.286968e-01	ci left: 4.797654e-03	ci right 5.462882e-03	k: 922	n:180000
Cons ci ratio: 2.472549e-01	ci left: 1.222143e-03	ci right 1.572010e-03	k: 250	n:180000
KS ci ratio: 1.289782e-02	ci left: 3.369461e-01	ci right 3.413257e-01	k: 61044	n:180000
CACNA2D3   180000 perm   53 sec   (3383 perm/sec)   p_kst 3.391333e-01   p_cons 1.388889e-03   p_joint 5.122222e-03

Joint ci ratio: 1.281573e-01	ci left: 4.585866e-03	ci right 5.218859e-03	k: 930	n:190000
Cons ci ratio: 2.406351e-01	ci left: 1.227001e-03	ci right 1.567451e-03	k: 264	n:190000
KS ci ratio: 1.253973e-02	ci left: 3.375072e-01	ci right 3.417714e-01	k: 64531	n:190000
CACNA2D3   190000 perm   57 sec   (3339 perm/sec)   p_kst 3.396368e-01   p_cons 1.389474e-03   p_joint 4.894737e-03

Joint ci ratio: 1.181370e-01	ci left: 5.151437e-03	ci right 5.803023e-03	k: 1094	n:200000
Cons ci ratio: 2.341002e-01	ci left: 1.236192e-03	ci right 1.568529e-03	k: 279	n:200000
KS ci ratio: 1.222037e-02	ci left: 3.376292e-01	ci right 3.417855e-01	k: 67941	n:200000
CACNA2D3   200000 perm   61 sec   (3298 perm/sec)   p_kst 3.397050e-01   p_cons 1.395000e-03   p_joint 5.470000e-03

Joint ci ratio: 1.220809e-01	ci left: 4.587346e-03	ci right 5.188351e-03	k: 1025	n:210000
Cons ci ratio: 2.296347e-01	ci left: 1.226663e-03	ci right 1.549257e-03	k: 290	n:210000
KS ci ratio: 1.194070e-02	ci left: 3.371227e-01	ci right 3.411770e-01	k: 71221	n:210000
CACNA2D3   210000 perm   64 sec   (3259 perm/sec)   p_kst 3.391476e-01   p_cons 1.380952e-03   p_joint 4.880952e-03

Joint ci ratio: 1.196020e-01	ci left: 4.568374e-03	ci right 5.153880e-03	k: 1068	n:220000
Cons ci ratio: 2.243024e-01	ci left: 1.230925e-03	ci right 1.546084e-03	k: 304	n:220000
KS ci ratio: 1.165877e-02	ci left: 3.374530e-01	ci right 3.414149e-01	k: 74675	n:220000
CACNA2D3   220000 perm   68 sec   (3222 perm/sec)   p_kst 3.394318e-01   p_cons 1.381818e-03   p_joint 4.854545e-03

Joint ci ratio: 1.045596e-01	ci left: 5.756204e-03	ci right 6.395470e-03	k: 1396	n:230000
Cons ci ratio: 2.203652e-01	ci left: 1.222569e-03	ci right 1.529349e-03	k: 315	n:230000
KS ci ratio: 1.141029e-02	ci left: 3.371912e-01	ci right 3.410650e-01	k: 77999	n:230000
CACNA2D3   230000 perm   72 sec   (3187 perm/sec)   p_kst 3.391261e-01   p_cons 1.369565e-03   p_joint 6.069565e-03

Joint ci ratio: 9.963478e-02	ci left: 6.088918e-03	ci right 6.731423e-03	k: 1537	n:240000
Cons ci ratio: 2.133856e-01	ci left: 1.254379e-03	ci right 1.557867e-03	k: 336	n:240000
KS ci ratio: 1.087504e-02	ci left: 3.493149e-01	ci right 3.531386e-01	k: 84294	n:240000
CACNA2D3   240000 perm   76 sec   (3152 perm/sec)   p_kst 3.512250e-01   p_cons 1.400000e-03   p_joint 6.404167e-03

Joint ci ratio: 8.626488e-02	ci left: 7.838461e-03	ci right 8.549012e-03	k: 2047	n:250000
Cons ci ratio: 2.102901e-01	ci left: 1.242081e-03	ci right 1.537673e-03	k: 346	n:250000
KS ci ratio: 1.065385e-02	ci left: 3.494165e-01	ci right 3.531630e-01	k: 87822	n:250000
CACNA2D3   250000 perm   80 sec   (3118 perm/sec)   p_kst 3.512880e-01   p_cons 1.384000e-03   p_joint 8.188000e-03

Joint ci ratio: 8.521555e-02	ci left: 7.728911e-03	ci right 8.420584e-03	k: 2098	n:260000
Cons ci ratio: 2.050377e-01	ci left: 1.259941e-03	ci right 1.551356e-03	k: 364	n:260000
KS ci ratio: 1.044748e-02	ci left: 3.494302e-01	ci right 3.531039e-01	k: 91329	n:260000
CACNA2D3   260000 perm   84 sec   (3085 perm/sec)   p_kst 3.512654e-01   p_cons 1.400000e-03   p_joint 8.069231e-03

Joint ci ratio: 8.406563e-02	ci left: 7.652910e-03	ci right 8.328086e-03	k: 2156	n:270000
Cons ci ratio: 2.006856e-01	ci left: 1.269526e-03	ci right 1.556162e-03	k: 380	n:270000
KS ci ratio: 1.025649e-02	ci left: 3.492735e-01	ci right 3.528779e-01	k: 94790	n:270000
CACNA2D3   270000 perm   88 sec   (3053 perm/sec)   p_kst 3.510741e-01   p_cons 1.407407e-03   p_joint 7.985185e-03

Joint ci ratio: 8.318841e-02	ci left: 7.540424e-03	ci right 8.198395e-03	k: 2202	n:280000
Cons ci ratio: 1.965993e-01	ci left: 1.278488e-03	ci right 1.560566e-03	k: 396	n:280000
KS ci ratio: 1.007000e-02	ci left: 3.493817e-01	ci right 3.529213e-01	k: 98322	n:280000
CACNA2D3   280000 perm   93 sec   (3020 perm/sec)   p_kst 3.511500e-01   p_cons 1.414286e-03   p_joint 7.864286e-03

Joint ci ratio: 8.046597e-02	ci left: 7.790485e-03	ci right 8.446988e-03	k: 2353	n:290000
Cons ci ratio: 1.941705e-01	ci left: 1.267197e-03	ci right 1.542922e-03	k: 406	n:290000
KS ci ratio: 9.887415e-03	ci left: 3.497552e-01	ci right 3.532340e-01	k: 101933	n:290000
CACNA2D3   290000 perm   97 sec   (2989 perm/sec)   p_kst 3.514931e-01   p_cons 1.400000e-03   p_joint 8.113793e-03

Joint ci ratio: 7.913272e-02	ci left: 7.792148e-03	ci right 8.437409e-03	k: 2433	n:300000
Cons ci ratio: 1.909147e-01	ci left: 1.269374e-03	ci right 1.540404e-03	k: 420	n:300000
KS ci ratio: 9.719520e-03	ci left: 3.498646e-01	ci right 3.532850e-01	k: 105472	n:300000
CACNA2D3   300000 perm   101 sec   (2957 perm/sec)   p_kst 3.515733e-01   p_cons 1.400000e-03   p_joint 8.110000e-03

Joint ci ratio: 7.912678e-02	ci left: 7.543912e-03	ci right 8.168567e-03	k: 2434	n:310000
Cons ci ratio: 1.886881e-01	ci left: 1.259152e-03	ci right 1.524504e-03	k: 430	n:310000
KS ci ratio: 9.564159e-03	ci left: 3.497643e-01	ci right 3.531288e-01	k: 108948	n:310000
CACNA2D3   310000 perm   106 sec   (2927 perm/sec)   p_kst 3.514452e-01   p_cons 1.387097e-03   p_joint 7.851613e-03

Joint ci ratio: 8.343966e-02	ci left: 6.564074e-03	ci right 7.138661e-03	k: 2191	n:320000
Cons ci ratio: 1.854877e-01	ci left: 1.264483e-03	ci right 1.525930e-03	k: 445	n:320000
KS ci ratio: 9.415952e-03	ci left: 3.496739e-01	ci right 3.529851e-01	k: 112425	n:320000
CACNA2D3   320000 perm   111 sec   (2896 perm/sec)   p_kst 3.513281e-01   p_cons 1.390625e-03   p_joint 6.846875e-03

Joint ci ratio: 8.215656e-02	ci left: 6.569925e-03	ci right 7.135757e-03	k: 2260	n:330000
Cons ci ratio: 1.828424e-01	ci left: 1.263743e-03	ci right 1.520898e-03	k: 458	n:330000
KS ci ratio: 9.272947e-03	ci left: 3.496620e-01	ci right 3.529225e-01	k: 115926	n:330000
CACNA2D3   330000 perm   115 sec   (2867 perm/sec)   p_kst 3.512909e-01   p_cons 1.387879e-03   p_joint 6.848485e-03

Joint ci ratio: 8.103600e-02	ci left: 6.558203e-03	ci right 7.114958e-03	k: 2323	n:340000
Cons ci ratio: 1.801161e-01	ci left: 1.265880e-03	ci right 1.519211e-03	k: 472	n:340000
KS ci ratio: 9.143642e-03	ci left: 3.492839e-01	ci right 3.524952e-01	k: 119302	n:340000
CACNA2D3   340000 perm   120 sec   (2838 perm/sec)   p_kst 3.508882e-01   p_cons 1.388235e-03   p_joint 6.832353e-03

Joint ci ratio: 7.599001e-02	ci left: 7.258871e-03	ci right 7.835042e-03	k: 2640	n:350000
Cons ci ratio: 1.775083e-01	ci left: 1.267922e-03	ci right 1.517593e-03	k: 486	n:350000
KS ci ratio: 9.011219e-03	ci left: 3.493501e-01	ci right 3.525152e-01	k: 122826	n:350000
CACNA2D3   350000 perm   125 sec   (2810 perm/sec)   p_kst 3.509314e-01   p_cons 1.388571e-03   p_joint 7.542857e-03

Joint ci ratio: 7.510087e-02	ci left: 7.228925e-03	ci right 7.795712e-03	k: 2703	n:360000
Cons ci ratio: 1.760695e-01	ci left: 1.253940e-03	ci right 1.498643e-03	k: 494	n:360000
KS ci ratio: 8.880922e-03	ci left: 3.495906e-01	ci right 3.527118e-01	k: 126414	n:360000
CACNA2D3   360000 perm   129 sec   (2781 perm/sec)   p_kst 3.511500e-01   p_cons 1.372222e-03   p_joint 7.508333e-03

Joint ci ratio: 7.451402e-02	ci left: 7.147580e-03	ci right 7.703420e-03	k: 2746	n:370000
Cons ci ratio: 1.743184e-01	ci left: 1.245891e-03	ci right 1.486351e-03	k: 504	n:370000
KS ci ratio: 8.759751e-03	ci left: 3.496293e-01	ci right 3.527081e-01	k: 129932	n:370000
CACNA2D3   370000 perm   134 sec   (2754 perm/sec)   p_kst 3.511676e-01   p_cons 1.362162e-03   p_joint 7.421622e-03

Joint ci ratio: 7.507390e-02	ci left: 6.856153e-03	ci right 7.393510e-03	k: 2706	n:380000
Cons ci ratio: 1.711277e-01	ci left: 1.260944e-03	ci right 1.499395e-03	k: 523	n:380000
KS ci ratio: 8.641013e-03	ci left: 3.497925e-01	ci right 3.528308e-01	k: 133498	n:380000
CACNA2D3   380000 perm   139 sec   (2727 perm/sec)   p_kst 3.513105e-01   p_cons 1.376316e-03   p_joint 7.121053e-03

Joint ci ratio: 7.510875e-02	ci left: 6.675299e-03	ci right 7.198734e-03	k: 2704	n:390000
Cons ci ratio: 1.696778e-01	ci left: 1.250704e-03	ci right 1.485010e-03	k: 532	n:390000
KS ci ratio: 8.531485e-03	ci left: 3.497068e-01	ci right 3.527056e-01	k: 136970	n:390000
CACNA2D3   390000 perm   144 sec   (2700 perm/sec)   p_kst 3.512051e-01   p_cons 1.364103e-03   p_joint 6.933333e-03

Joint ci ratio: 7.525549e-02	ci left: 6.483862e-03	ci right 6.993322e-03	k: 2694	n:400000
Cons ci ratio: 1.671865e-01	ci left: 1.257751e-03	ci right 1.489569e-03	k: 548	n:400000
KS ci ratio: 8.423893e-03	ci left: 3.497405e-01	ci right 3.527016e-01	k: 140488	n:400000
CACNA2D3   400000 perm   150 sec   (2675 perm/sec)   p_kst 3.512200e-01   p_cons 1.370000e-03   p_joint 6.735000e-03

Joint ci ratio: 7.718796e-02	ci left: 6.009847e-03	ci right 6.494732e-03	k: 2562	n:410000
Cons ci ratio: 1.643654e-01	ci left: 1.271494e-03	ci right 1.501499e-03	k: 567	n:410000
KS ci ratio: 8.322320e-03	ci left: 3.496607e-01	ci right 3.525853e-01	k: 143960	n:410000
CACNA2D3   410000 perm   155 sec   (2651 perm/sec)   p_kst 3.511220e-01   p_cons 1.382927e-03   p_joint 6.248780e-03

Joint ci ratio: 7.621260e-02	ci left: 6.020885e-03	ci right 6.500250e-03	k: 2628	n:420000
Cons ci ratio: 1.620977e-01	ci left: 1.277760e-03	ci right 1.505399e-03	k: 583	n:420000
KS ci ratio: 8.223217e-03	ci left: 3.496468e-01	ci right 3.525362e-01	k: 147458	n:420000
CACNA2D3   420000 perm   160 sec   (2627 perm/sec)   p_kst 3.510905e-01   p_cons 1.388095e-03   p_joint 6.257143e-03

Joint ci ratio: 7.538598e-02	ci left: 6.013191e-03	ci right 6.486523e-03	k: 2686	n:430000
Cons ci ratio: 1.605929e-01	ci left: 1.272593e-03	ci right 1.497003e-03	k: 594	n:430000
KS ci ratio: 8.125125e-03	ci left: 3.497708e-01	ci right 3.526266e-01	k: 151015	n:430000
CACNA2D3   430000 perm   165 sec   (2603 perm/sec)   p_kst 3.511977e-01   p_cons 1.381395e-03   p_joint 6.246512e-03

Joint ci ratio: 7.959821e-02	ci left: 5.263548e-03	ci right 5.702094e-03	k: 2411	n:440000
Cons ci ratio: 1.597907e-01	ci left: 1.256759e-03	ci right 1.477164e-03	k: 600	n:440000
KS ci ratio: 8.031142e-03	ci left: 3.498507e-01	ci right 3.526740e-01	k: 154555	n:440000
CACNA2D3   440000 perm   171 sec   (2580 perm/sec)   p_kst 3.512614e-01   p_cons 1.363636e-03   p_joint 5.479545e-03

Joint ci ratio: 7.854599e-02	ci left: 5.288171e-03	ci right 5.722678e-03	k: 2476	n:450000
Cons ci ratio: 1.587387e-01	ci left: 1.245900e-03	ci right 1.462825e-03	k: 608	n:450000
KS ci ratio: 7.940462e-03	ci left: 3.499206e-01	ci right 3.527124e-01	k: 158092	n:450000
CACNA2D3   450000 perm   176 sec   (2556 perm/sec)   p_kst 3.513156e-01   p_cons 1.351111e-03   p_joint 5.502222e-03

Joint ci ratio: 7.792065e-02	ci left: 5.258463e-03	ci right 5.686933e-03	k: 2516	n:460000
Cons ci ratio: 1.578353e-01	ci left: 1.233429e-03	ci right 1.446845e-03	k: 615	n:460000
KS ci ratio: 7.852374e-03	ci left: 3.500115e-01	ci right 3.527729e-01	k: 161640	n:460000
CACNA2D3   460000 perm   182 sec   (2533 perm/sec)   p_kst 3.513913e-01   p_cons 1.336957e-03   p_joint 5.469565e-03

Joint ci ratio: 7.708299e-02	ci left: 5.261334e-03	ci right 5.685223e-03	k: 2571	n:470000
Cons ci ratio: 1.561958e-01	ci left: 1.233758e-03	ci right 1.444806e-03	k: 628	n:470000
KS ci ratio: 7.767807e-03	ci left: 3.500605e-01	ci right 3.527924e-01	k: 165170	n:470000
CACNA2D3   470000 perm   187 sec   (2512 perm/sec)   p_kst 3.514255e-01   p_cons 1.336170e-03   p_joint 5.470213e-03

Joint ci ratio: 7.800751e-02	ci left: 5.029124e-03	ci right 5.439383e-03	k: 2511	n:480000
Cons ci ratio: 1.548481e-01	ci left: 1.230080e-03	ci right 1.438514e-03	k: 639	n:480000
KS ci ratio: 7.685914e-03	ci left: 3.501076e-01	ci right 3.528109e-01	k: 168700	n:480000
CACNA2D3   480000 perm   193 sec   (2489 perm/sec)   p_kst 3.514583e-01   p_cons 1.331250e-03   p_joint 5.231250e-03

Joint ci ratio: 7.698640e-02	ci left: 5.060576e-03	ci right 5.467756e-03	k: 2578	n:490000
Cons ci ratio: 1.523673e-01	ci left: 1.246187e-03	ci right 1.453659e-03	k: 660	n:490000
KS ci ratio: 7.604209e-03	ci left: 3.502936e-01	ci right 3.529694e-01	k: 172299	n:490000
CACNA2D3   490000 perm   199 sec   (2468 perm/sec)   p_kst 3.516306e-01   p_cons 1.346939e-03   p_joint 5.261224e-03

Joint ci ratio: 7.682596e-02	ci left: 4.980934e-03	ci right 5.380833e-03	k: 2589	n:500000
Cons ci ratio: 1.511155e-01	ci left: 1.242428e-03	ci right 1.447421e-03	k: 671	n:500000
KS ci ratio: 7.529114e-03	ci left: 3.502265e-01	ci right 3.528753e-01	k: 175775	n:500000
CACNA2D3   500000 perm   204 sec   (2447 perm/sec)   p_kst 3.515500e-01   p_cons 1.342000e-03   p_joint 5.178000e-03

Joint ci ratio: 7.619671e-02	ci left: 4.965968e-03	ci right 5.361254e-03	k: 2632	n:510000
Cons ci ratio: 1.498940e-01	ci left: 1.238822e-03	ci right 1.441420e-03	k: 682	n:510000
KS ci ratio: 7.456330e-03	ci left: 3.501543e-01	ci right 3.527768e-01	k: 179247	n:510000
CACNA2D3   510000 perm   210 sec   (2426 perm/sec)   p_kst 3.514647e-01   p_cons 1.337255e-03   p_joint 5.160784e-03

Joint ci ratio: 7.562529e-02	ci left: 4.945929e-03	ci right 5.336539e-03	k: 2672	n:520000
Cons ci ratio: 1.485945e-01	ci left: 1.237214e-03	ci right 1.437639e-03	k: 694	n:520000
KS ci ratio: 7.384213e-03	ci left: 3.501715e-01	ci right 3.527687e-01	k: 182764	n:520000
CACNA2D3   520000 perm   216 sec   (2406 perm/sec)   p_kst 3.514692e-01   p_cons 1.334615e-03   p_joint 5.138462e-03

Joint ci ratio: 7.841992e-02	ci left: 4.508384e-03	ci right 4.878195e-03	k: 2486	n:530000
Cons ci ratio: 1.475374e-01	ci left: 1.232039e-03	ci right 1.430080e-03	k: 704	n:530000
KS ci ratio: 7.315543e-03	ci left: 3.501014e-01	ci right 3.526738e-01	k: 186235	n:530000
CACNA2D3   530000 perm   222 sec   (2386 perm/sec)   p_kst 3.513868e-01   p_cons 1.328302e-03   p_joint 4.690566e-03

Joint ci ratio: 7.765847e-02	ci left: 4.513865e-03	ci right 4.880369e-03	k: 2535	n:540000
Cons ci ratio: 1.455878e-01	ci left: 1.243119e-03	ci right 1.440071e-03	k: 723	n:540000
KS ci ratio: 7.247427e-03	ci left: 3.501173e-01	ci right 3.526658e-01	k: 189751	n:540000
CACNA2D3   540000 perm   228 sec   (2366 perm/sec)   p_kst 3.513907e-01   p_cons 1.338889e-03   p_joint 4.694444e-03

Joint ci ratio: 7.697865e-02	ci left: 4.512031e-03	ci right 4.875035e-03	k: 2580	n:550000
Cons ci ratio: 1.446919e-01	ci left: 1.236286e-03	ci right 1.430846e-03	k: 732	n:550000
KS ci ratio: 7.178918e-03	ci left: 3.502762e-01	ci right 3.528017e-01	k: 193346	n:550000
CACNA2D3   550000 perm   234 sec   (2346 perm/sec)   p_kst 3.515382e-01   p_cons 1.330909e-03   p_joint 4.690909e-03

Joint ci ratio: 7.624347e-02	ci left: 4.519035e-03	ci right 4.878976e-03	k: 2630	n:560000
Cons ci ratio: 1.427565e-01	ci left: 1.248640e-03	ci right 1.442292e-03	k: 752	n:560000
KS ci ratio: 7.115016e-03	ci left: 3.502565e-01	ci right 3.527593e-01	k: 196844	n:560000
CACNA2D3   560000 perm   241 sec   (2326 perm/sec)   p_kst 3.515071e-01   p_cons 1.342857e-03   p_joint 4.696429e-03

Joint ci ratio: 7.572788e-02	ci left: 4.501710e-03	ci right 4.857739e-03	k: 2666	n:570000
Cons ci ratio: 1.412633e-01	ci left: 1.253807e-03	ci right 1.446055e-03	k: 768	n:570000
KS ci ratio: 7.049644e-03	ci left: 3.504410e-01	ci right 3.529219e-01	k: 200458	n:570000
CACNA2D3   570000 perm   247 sec   (2307 perm/sec)   p_kst 3.516807e-01   p_cons 1.347368e-03   p_joint 4.677193e-03

Joint ci ratio: 7.575949e-02	ci left: 4.420704e-03	ci right 4.770479e-03	k: 2664	n:580000
Cons ci ratio: 1.392840e-01	ci left: 1.268790e-03	ci right 1.460384e-03	k: 790	n:580000
KS ci ratio: 6.988920e-03	ci left: 3.504314e-01	ci right 3.528908e-01	k: 203963	n:580000
CACNA2D3   580000 perm   253 sec   (2289 perm/sec)   p_kst 3.516603e-01   p_cons 1.362069e-03   p_joint 4.593103e-03

Joint ci ratio: 7.563427e-02	ci left: 4.360738e-03	ci right 4.705172e-03	k: 2673	n:590000
Cons ci ratio: 1.380674e-01	ci left: 1.270191e-03	ci right 1.460183e-03	k: 804	n:590000
KS ci ratio: 6.929867e-03	ci left: 3.504137e-01	ci right 3.528521e-01	k: 207463	n:590000
CACNA2D3   590000 perm   260 sec   (2270 perm/sec)   p_kst 3.516322e-01   p_cons 1.362712e-03   p_joint 4.530508e-03

Joint ci ratio: 7.355247e-02	ci left: 4.538318e-03	ci right 4.886491e-03	k: 2826	n:600000
Cons ci ratio: 1.366319e-01	ci left: 1.276381e-03	ci right 1.465153e-03	k: 821	n:600000
KS ci ratio: 6.873592e-03	ci left: 3.503101e-01	ci right 3.527280e-01	k: 210911	n:600000
CACNA2D3   600000 perm   266 sec   (2252 perm/sec)   p_kst 3.515183e-01   p_cons 1.368333e-03   p_joint 4.710000e-03

Joint ci ratio: 6.719896e-02	ci left: 5.361069e-03	ci right 5.735453e-03	k: 3383	n:610000
Cons ci ratio: 1.354830e-01	ci left: 1.277626e-03	ci right 1.464865e-03	k: 835	n:610000
KS ci ratio: 6.816484e-03	ci left: 3.503558e-01	ci right 3.527538e-01	k: 214448	n:610000
CACNA2D3   610000 perm   273 sec   (2234 perm/sec)   p_kst 3.515541e-01   p_cons 1.368852e-03   p_joint 5.545902e-03

Joint ci ratio: 6.663998e-02	ci left: 5.364998e-03	ci right 5.736419e-03	k: 3440	n:620000
Cons ci ratio: 1.343626e-01	ci left: 1.278838e-03	ci right 1.464581e-03	k: 849	n:620000
KS ci ratio: 6.759461e-03	ci left: 3.504888e-01	ci right 3.528675e-01	k: 218040	n:620000
CACNA2D3   620000 perm   280 sec   (2217 perm/sec)   p_kst 3.516774e-01   p_cons 1.369355e-03   p_joint 5.548387e-03

Joint ci ratio: 6.711524e-02	ci left: 5.204909e-03	ci right 5.567916e-03	k: 3392	n:630000
Cons ci ratio: 1.331924e-01	ci left: 1.281552e-03	ci right 1.465939e-03	k: 864	n:630000
KS ci ratio: 6.706108e-03	ci left: 3.504637e-01	ci right 3.528234e-01	k: 221535	n:630000
CACNA2D3   630000 perm   286 sec   (2201 perm/sec)   p_kst 3.516429e-01   p_cons 1.371429e-03   p_joint 5.384127e-03

Joint ci ratio: 6.661660e-02	ci left: 5.201937e-03	ci right 5.561938e-03	k: 3443	n:640000
Cons ci ratio: 1.318274e-01	ci left: 1.288721e-03	ci right 1.472091e-03	k: 882	n:640000
KS ci ratio: 6.652563e-03	ci left: 3.505378e-01	ci right 3.528791e-01	k: 225093	n:640000
CACNA2D3   640000 perm   293 sec   (2183 perm/sec)   p_kst 3.517078e-01   p_cons 1.378125e-03   p_joint 5.379687e-03

Joint ci ratio: 6.662910e-02	ci left: 5.120387e-03	ci right 5.474813e-03	k: 3442	n:650000
Cons ci ratio: 1.308676e-01	ci left: 1.288237e-03	ci right 1.470100e-03	k: 895	n:650000
KS ci ratio: 6.599902e-03	ci left: 3.506359e-01	ci right 3.529592e-01	k: 228668	n:650000
CACNA2D3   650000 perm   300 sec   (2166 perm/sec)   p_kst 3.517969e-01   p_cons 1.376923e-03   p_joint 5.295385e-03

Joint ci ratio: 6.614114e-02	ci left: 5.118795e-03	ci right 5.470417e-03	k: 3493	n:660000
Cons ci ratio: 1.298570e-01	ci left: 1.289239e-03	ci right 1.469729e-03	k: 909	n:660000
KS ci ratio: 6.550299e-03	ci left: 3.506039e-01	ci right 3.529095e-01	k: 232159	n:660000
CACNA2D3   660000 perm   307 sec   (2150 perm/sec)   p_kst 3.517561e-01   p_cons 1.377273e-03   p_joint 5.292424e-03

Joint ci ratio: 6.641180e-02	ci left: 5.001287e-03	ci right 5.346296e-03	k: 3465	n:670000
Cons ci ratio: 1.287300e-01	ci left: 1.293105e-03	ci right 1.472445e-03	k: 925	n:670000
KS ci ratio: 6.501308e-03	ci left: 3.506072e-01	ci right 3.528955e-01	k: 235673	n:670000
CACNA2D3   670000 perm   314 sec   (2134 perm/sec)   p_kst 3.517507e-01   p_cons 1.380597e-03   p_joint 5.171642e-03

Joint ci ratio: 6.613680e-02	ci left: 4.969676e-03	ci right 5.311031e-03	k: 3494	n:680000
Cons ci ratio: 1.279041e-01	ci left: 1.291169e-03	ci right 1.469005e-03	k: 937	n:680000
KS ci ratio: 6.453068e-03	ci left: 3.506340e-01	ci right 3.529055e-01	k: 239203	n:680000
CACNA2D3   680000 perm   321 sec   (2118 perm/sec)   p_kst 3.517691e-01   p_cons 1.377941e-03   p_joint 5.138235e-03

Joint ci ratio: 6.575276e-02	ci left: 4.956091e-03	ci right 5.294461e-03	k: 3535	n:690000
Cons ci ratio: 1.273627e-01	ci left: 1.283680e-03	ci right 1.459680e-03	k: 945	n:690000
KS ci ratio: 6.404380e-03	ci left: 3.507673e-01	ci right 3.530224e-01	k: 242807	n:690000
CACNA2D3   690000 perm   328 sec   (2102 perm/sec)   p_kst 3.518942e-01   p_cons 1.369565e-03   p_joint 5.123188e-03

Joint ci ratio: 6.673924e-02	ci left: 4.740567e-03	ci right 5.069265e-03	k: 3432	n:700000
Cons ci ratio: 1.266289e-01	ci left: 1.280557e-03	ci right 1.455040e-03	k: 956	n:700000
KS ci ratio: 6.357632e-03	ci left: 3.508354e-01	ci right 3.530744e-01	k: 246368	n:700000
CACNA2D3   700000 perm   335 sec   (2086 perm/sec)   p_kst 3.519543e-01   p_cons 1.365714e-03   p_joint 4.902857e-03

Joint ci ratio: 6.705633e-02	ci left: 4.629473e-03	ci right 4.952053e-03	k: 3400	n:710000
Cons ci ratio: 1.259727e-01	ci left: 1.276160e-03	ci right 1.449076e-03	k: 966	n:710000
KS ci ratio: 6.311699e-03	ci left: 3.509157e-01	ci right 3.531390e-01	k: 249939	n:710000
CACNA2D3   710000 perm   343 sec   (2071 perm/sec)   p_kst 3.520268e-01   p_cons 1.360563e-03   p_joint 4.788732e-03

Joint ci ratio: 6.653963e-02	ci left: 4.637557e-03	ci right 4.958114e-03	k: 3453	n:720000
Cons ci ratio: 1.251985e-01	ci left: 1.274578e-03	ci right 1.446140e-03	k: 978	n:720000
KS ci ratio: 6.267453e-03	ci left: 3.509425e-01	ci right 3.531503e-01	k: 253473	n:720000
CACNA2D3   720000 perm   350 sec   (2056 perm/sec)   p_kst 3.520458e-01   p_cons 1.358333e-03   p_joint 4.795833e-03

Joint ci ratio: 6.617705e-02	ci left: 4.625219e-03	ci right 4.943114e-03	k: 3491	n:730000
Cons ci ratio: 1.247538e-01	ci left: 1.266407e-03	ci right 1.436219e-03	k: 985	n:730000
KS ci ratio: 6.225414e-03	ci left: 3.508742e-01	ci right 3.530667e-01	k: 256938	n:730000
CACNA2D3   730000 perm   358 sec   (2041 perm/sec)   p_kst 3.519699e-01   p_cons 1.349315e-03   p_joint 4.782192e-03

Joint ci ratio: 6.867384e-02	ci left: 4.233200e-03	ci right 4.535565e-03	k: 3243	n:740000
Cons ci ratio: 1.233230e-01	ci left: 1.279411e-03	ci right 1.448855e-03	k: 1008	n:740000
KS ci ratio: 6.184338e-03	ci left: 3.507983e-01	ci right 3.529758e-01	k: 260396	n:740000
CACNA2D3   740000 perm   365 sec   (2027 perm/sec)   p_kst 3.518865e-01   p_cons 1.362162e-03   p_joint 4.382432e-03

Joint ci ratio: 6.428520e-02	ci left: 4.774702e-03	ci right 5.093140e-03	k: 3699	n:750000
Cons ci ratio: 1.222967e-01	ci left: 1.284323e-03	ci right 1.452900e-03	k: 1025	n:750000
KS ci ratio: 6.143291e-03	ci left: 3.507818e-01	ci right 3.529447e-01	k: 263897	n:750000
CACNA2D3   750000 perm   373 sec   (2012 perm/sec)   p_kst 3.518627e-01   p_cons 1.366667e-03   p_joint 4.932000e-03

Joint ci ratio: 6.386373e-02	ci left: 4.775318e-03	ci right 5.091632e-03	k: 3748	n:760000
Cons ci ratio: 1.211214e-01	ci left: 1.292939e-03	ci right 1.460899e-03	k: 1045	n:760000
KS ci ratio: 6.102823e-03	ci left: 3.507828e-01	ci right 3.529314e-01	k: 267411	n:760000
CACNA2D3   760000 perm   380 sec   (1998 perm/sec)   p_kst 3.518566e-01   p_cons 1.375000e-03   p_joint 4.931579e-03

Joint ci ratio: 6.297725e-02	ci left: 4.848785e-03	ci right 5.165346e-03	k: 3854	n:770000
Cons ci ratio: 1.196985e-01	ci left: 1.307638e-03	ci right 1.475370e-03	k: 1070	n:770000
KS ci ratio: 6.062781e-03	ci left: 3.508112e-01	ci right 3.529458e-01	k: 270946	n:770000
CACNA2D3   770000 perm   388 sec   (1984 perm/sec)   p_kst 3.518779e-01   p_cons 1.389610e-03   p_joint 5.005195e-03

Joint ci ratio: 5.859538e-02	ci left: 5.537917e-03	ci right 5.873462e-03	k: 4449	n:780000
Cons ci ratio: 1.189238e-01	ci left: 1.308286e-03	ci right 1.474939e-03	k: 1084	n:780000
KS ci ratio: 6.107019e-03	ci left: 3.445894e-01	ci right 3.467015e-01	k: 269603	n:780000
CACNA2D3   780000 perm   396 sec   (1970 perm/sec)   p_kst 3.456449e-01   p_cons 1.389744e-03   p_joint 5.703846e-03

Joint ci ratio: 5.819122e-02	ci left: 5.545153e-03	ci right 5.878740e-03	k: 4511	n:790000
Cons ci ratio: 1.182177e-01	ci left: 1.307693e-03	ci right 1.473213e-03	k: 1097	n:790000
KS ci ratio: 6.069287e-03	ci left: 3.445184e-01	ci right 3.466169e-01	k: 272998	n:790000
CACNA2D3   790000 perm   404 sec   (1956 perm/sec)   p_kst 3.455671e-01   p_cons 1.388608e-03   p_joint 5.710127e-03

Joint ci ratio: 5.789725e-02	ci left: 5.532503e-03	ci right 5.863592e-03	k: 4557	n:800000
Cons ci ratio: 1.175241e-01	ci left: 1.307118e-03	ci right 1.471527e-03	k: 1110	n:800000
KS ci ratio: 6.031847e-03	ci left: 3.444791e-01	ci right 3.465645e-01	k: 276417	n:800000
CACNA2D3   800000 perm   412 sec   (1943 perm/sec)   p_kst 3.455213e-01   p_cons 1.387500e-03   p_joint 5.696250e-03

Joint ci ratio: 5.842365e-02	ci left: 5.365641e-03	ci right 5.689762e-03	k: 4476	n:810000
Cons ci ratio: 1.171561e-01	ci left: 1.299369e-03	ci right 1.462255e-03	k: 1117	n:810000
KS ci ratio: 5.994926e-03	ci left: 3.444533e-01	ci right 3.465256e-01	k: 279846	n:810000
CACNA2D3   810000 perm   420 sec   (1930 perm/sec)   p_kst 3.454889e-01   p_cons 1.379012e-03   p_joint 5.525926e-03

Joint ci ratio: 5.400534e-02	ci left: 6.211693e-03	ci right 6.557662e-03	k: 5234	n:820000
Cons ci ratio: 1.162752e-01	ci left: 1.303649e-03	ci right 1.465760e-03	k: 1134	n:820000
KS ci ratio: 5.960026e-03	ci left: 3.443257e-01	ci right 3.463852e-01	k: 283191	n:820000
CACNA2D3   820000 perm   428 sec   (1916 perm/sec)   p_kst 3.453549e-01   p_cons 1.382927e-03   p_joint 6.382927e-03

Joint ci ratio: 5.415860e-02	ci left: 6.102377e-03	ci right 6.443251e-03	k: 5205	n:830000
Cons ci ratio: 1.155646e-01	ci left: 1.304321e-03	ci right 1.465456e-03	k: 1148	n:830000
KS ci ratio: 5.924401e-03	ci left: 3.443023e-01	ci right 3.463493e-01	k: 286620	n:830000
CACNA2D3   830000 perm   436 sec   (1903 perm/sec)   p_kst 3.453253e-01   p_cons 1.383133e-03   p_joint 6.271084e-03

Joint ci ratio: 5.396799e-02	ci left: 6.073179e-03	ci right 6.411192e-03	k: 5242	n:840000
Cons ci ratio: 1.146205e-01	ci left: 1.310762e-03	ci right 1.471280e-03	k: 1167	n:840000
KS ci ratio: 5.890121e-03	ci left: 3.442249e-01	ci right 3.462595e-01	k: 290003	n:840000
CACNA2D3   840000 perm   444 sec   (1890 perm/sec)   p_kst 3.452417e-01   p_cons 1.389286e-03   p_joint 6.240476e-03

Joint ci ratio: 5.370778e-02	ci left: 6.060921e-03	ci right 6.396575e-03	k: 5293	n:850000
Cons ci ratio: 1.140363e-01	ci left: 1.309055e-03	ci right 1.468492e-03	k: 1179	n:850000
KS ci ratio: 5.856459e-03	ci left: 3.441469e-01	ci right 3.461694e-01	k: 293384	n:850000
CACNA2D3   850000 perm   453 sec   (1878 perm/sec)   p_kst 3.451576e-01   p_cons 1.387059e-03   p_joint 6.227059e-03

Joint ci ratio: 5.394606e-02	ci left: 5.937667e-03	ci right 6.267999e-03	k: 5247	n:860000
Cons ci ratio: 1.131761e-01	ci left: 1.314169e-03	ci right 1.472941e-03	k: 1197	n:860000
KS ci ratio: 5.820837e-03	ci left: 3.442672e-01	ci right 3.462781e-01	k: 296934	n:860000
CACNA2D3   860000 perm   461 sec   (1866 perm/sec)   p_kst 3.452721e-01   p_cons 1.391860e-03   p_joint 6.101163e-03

Joint ci ratio: 5.398938e-02	ci left: 5.860340e-03	ci right 6.186640e-03	k: 5239	n:870000
Cons ci ratio: 1.125205e-01	ci left: 1.314701e-03	ci right 1.472557e-03	k: 1211	n:870000
KS ci ratio: 5.787695e-03	ci left: 3.442411e-01	ci right 3.462404e-01	k: 300359	n:870000
CACNA2D3   870000 perm   469 sec   (1854 perm/sec)   p_kst 3.452402e-01   p_cons 1.391954e-03   p_joint 6.021839e-03

Joint ci ratio: 5.385699e-02	ci left: 5.822890e-03	ci right 6.146284e-03	k: 5265	n:880000
Cons ci ratio: 1.117394e-01	ci left: 1.318538e-03	ci right 1.475683e-03	k: 1228	n:880000
KS ci ratio: 5.754072e-03	ci left: 3.442975e-01	ci right 3.462854e-01	k: 303856	n:880000
CACNA2D3   880000 perm   478 sec   (1842 perm/sec)   p_kst 3.452909e-01   p_cons 1.395455e-03   p_joint 5.982955e-03

Joint ci ratio: 5.394647e-02	ci left: 5.738614e-03	ci right 6.057874e-03	k: 5248	n:890000
Cons ci ratio: 1.111532e-01	ci left: 1.317922e-03	ci right 1.474116e-03	k: 1241	n:890000
KS ci ratio: 5.721241e-03	ci left: 3.443357e-01	ci right 3.463125e-01	k: 307338	n:890000
CACNA2D3   890000 perm   486 sec   (1830 perm/sec)   p_kst 3.453236e-01   p_cons 1.394382e-03   p_joint 5.896629e-03

Joint ci ratio: 5.387603e-02	ci left: 5.690193e-03	ci right 6.006333e-03	k: 5262	n:900000
Cons ci ratio: 1.104879e-01	ci left: 1.319484e-03	ci right 1.474865e-03	k: 1256	n:900000
KS ci ratio: 5.689986e-03	ci left: 3.442921e-01	ci right 3.462578e-01	k: 310747	n:900000
CACNA2D3   900000 perm   495 sec   (1818 perm/sec)   p_kst 3.452744e-01   p_cons 1.395556e-03   p_joint 5.846667e-03

Joint ci ratio: 5.491587e-02	ci left: 5.415187e-03	ci right 5.722039e-03	k: 5066	n:910000
Cons ci ratio: 1.099210e-01	ci left: 1.318876e-03	ci right 1.473337e-03	k: 1269	n:910000
KS ci ratio: 5.658124e-03	ci left: 3.443384e-01	ci right 3.462933e-01	k: 314237	n:910000
CACNA2D3   910000 perm   504 sec   (1805 perm/sec)   p_kst 3.453154e-01   p_cons 1.394505e-03   p_joint 5.567033e-03

Joint ci ratio: 5.525297e-02	ci left: 5.290926e-03	ci right 5.592635e-03	k: 5005	n:920000
Cons ci ratio: 1.091924e-01	ci left: 1.322512e-03	ci right 1.476307e-03	k: 1286	n:920000
KS ci ratio: 5.627589e-03	ci left: 3.443197e-01	ci right 3.462639e-01	k: 317668	n:920000
CACNA2D3   920000 perm   513 sec   (1794 perm/sec)   p_kst 3.452913e-01   p_cons 1.397826e-03   p_joint 5.440217e-03

Joint ci ratio: 5.502300e-02	ci left: 5.278572e-03	ci right 5.578284e-03	k: 5047	n:930000
Cons ci ratio: 1.084365e-01	ci left: 1.327120e-03	ci right 1.480314e-03	k: 1304	n:930000
KS ci ratio: 5.597037e-03	ci left: 3.443422e-01	ci right 3.462760e-01	k: 321137	n:930000
CACNA2D3   930000 perm   522 sec   (1782 perm/sec)   p_kst 3.453086e-01   p_cons 1.402151e-03   p_joint 5.426882e-03

Joint ci ratio: 5.473645e-02	ci left: 5.278026e-03	ci right 5.576097e-03	k: 5100	n:940000
Cons ci ratio: 1.078595e-01	ci left: 1.327492e-03	ci right 1.479862e-03	k: 1318	n:940000
KS ci ratio: 5.567384e-03	ci left: 3.443313e-01	ci right 3.462547e-01	k: 324575	n:940000
CACNA2D3   940000 perm   531 sec   (1770 perm/sec)   p_kst 3.452926e-01   p_cons 1.402128e-03   p_joint 5.425532e-03

Joint ci ratio: 5.343195e-02	ci left: 5.483121e-03	ci right 5.785168e-03	k: 5351	n:950000
Cons ci ratio: 1.072916e-01	ci left: 1.327859e-03	ci right 1.479418e-03	k: 1332	n:950000
KS ci ratio: 5.537836e-03	ci left: 3.443502e-01	ci right 3.462634e-01	k: 328041	n:950000
CACNA2D3   950000 perm   540 sec   (1758 perm/sec)   p_kst 3.453063e-01   p_cons 1.402105e-03   p_joint 5.632632e-03

Joint ci ratio: 5.386536e-02	ci left: 5.338641e-03	ci right 5.635188e-03	k: 5266	n:960000
Cons ci ratio: 1.067326e-01	ci left: 1.328220e-03	ci right 1.478981e-03	k: 1346	n:960000
KS ci ratio: 5.508652e-03	ci left: 3.443769e-01	ci right 3.462802e-01	k: 331515	n:960000
CACNA2D3   960000 perm   549 sec   (1747 perm/sec)   p_kst 3.453281e-01   p_cons 1.402083e-03   p_joint 5.485417e-03

Joint ci ratio: 5.369801e-02	ci left: 5.317165e-03	ci right 5.611573e-03	k: 5299	n:970000
Cons ci ratio: 1.060652e-01	ci left: 1.331587e-03	ci right 1.481725e-03	k: 1363	n:970000
KS ci ratio: 5.479575e-03	ci left: 3.444320e-01	ci right 3.463256e-01	k: 335017	n:970000
CACNA2D3   970000 perm   559 sec   (1737 perm/sec)   p_kst 3.453784e-01   p_cons 1.405155e-03   p_joint 5.462887e-03

Joint ci ratio: 5.346170e-02	ci left: 5.310224e-03	ci right 5.602914e-03	k: 5346	n:980000
Cons ci ratio: 1.056018e-01	ci left: 1.329920e-03	ci right 1.479175e-03	k: 1375	n:980000
KS ci ratio: 5.451482e-03	ci left: 3.444422e-01	ci right 3.463261e-01	k: 338476	n:980000
CACNA2D3   980000 perm   568 sec   (1726 perm/sec)   p_kst 3.453837e-01   p_cons 1.403061e-03   p_joint 5.455102e-03

Joint ci ratio: 5.323344e-02	ci left: 5.302430e-03	ci right 5.593404e-03	k: 5392	n:990000
Cons ci ratio: 1.051445e-01	ci left: 1.328288e-03	ci right 1.476674e-03	k: 1387	n:990000
KS ci ratio: 5.423587e-03	ci left: 3.444714e-01	ci right 3.463457e-01	k: 341954	n:990000
CACNA2D3   990000 perm   577 sec   (1716 perm/sec)   p_kst 3.454081e-01   p_cons 1.401010e-03   p_joint 5.446465e-03

Joint ci ratio: 5.300318e-02	ci left: 5.295781e-03	ci right 5.585095e-03	k: 5439	n:1000000
Cons ci ratio: 1.046182e-01	ci left: 1.328638e-03	ci right 1.476274e-03	k: 1401	n:1000000
KS ci ratio: 5.395733e-03	ci left: 3.445319e-01	ci right 3.463969e-01	k: 345464	n:1000000
CACNA2D3   1000000 perm   586 sec   (1705 perm/sec)   p_kst 3.454640e-01   p_cons 1.401000e-03   p_joint 5.439000e-03

Joint ci ratio: 5.284856e-02	ci left: 5.274610e-03	ci right 5.561901e-03	k: 5471	n:1010000
Cons ci ratio: 1.039895e-01	ci left: 1.331876e-03	ci right 1.478928e-03	k: 1418	n:1010000
KS ci ratio: 5.370045e-03	ci left: 3.444449e-01	ci right 3.463005e-01	k: 348826	n:1010000
CACNA2D3   1010000 perm   596 sec   (1695 perm/sec)   p_kst 3.453723e-01   p_cons 1.403960e-03   p_joint 5.416832e-03

Joint ci ratio: 5.272900e-02	ci left: 5.247082e-03	ci right 5.532208e-03	k: 5496	n:1020000
Cons ci ratio: 1.034441e-01	ci left: 1.333143e-03	ci right 1.479516e-03	k: 1433	n:1020000
KS ci ratio: 5.343908e-03	ci left: 3.444282e-01	ci right 3.462747e-01	k: 352258	n:1020000
CACNA2D3   1020000 perm   605 sec   (1685 perm/sec)   p_kst 3.453510e-01   p_cons 1.404902e-03   p_joint 5.388235e-03

Joint ci ratio: 5.326393e-02	ci left: 5.091706e-03	ci right 5.371281e-03	k: 5387	n:1030000
Cons ci ratio: 1.030141e-01	ci left: 1.331549e-03	ci right 1.477103e-03	k: 1445	n:1030000
KS ci ratio: 5.317818e-03	ci left: 3.444399e-01	ci right 3.462774e-01	k: 355719	n:1030000
CACNA2D3   1030000 perm   615 sec   (1675 perm/sec)   p_kst 3.453583e-01   p_cons 1.402913e-03   p_joint 5.230097e-03

Joint ci ratio: 5.314642e-02	ci left: 5.065516e-03	ci right 5.343020e-03	k: 5411	n:1040000
Cons ci ratio: 1.026246e-01	ci left: 1.329051e-03	ci right 1.473749e-03	k: 1456	n:1040000
KS ci ratio: 5.291735e-03	ci left: 3.444832e-01	ci right 3.463119e-01	k: 359213	n:1040000
CACNA2D3   1040000 perm   624 sec   (1665 perm/sec)   p_kst 3.453971e-01   p_cons 1.400000e-03   p_joint 5.202885e-03

Joint ci ratio: 5.334128e-02	ci left: 4.980618e-03	ci right 5.254503e-03	k: 5372	n:1050000
Cons ci ratio: 1.022047e-01	ci left: 1.327529e-03	ci right 1.471435e-03	k: 1468	n:1050000
KS ci ratio: 5.266476e-03	ci left: 3.444876e-01	ci right 3.463075e-01	k: 362667	n:1050000
CACNA2D3   1050000 perm   634 sec   (1656 perm/sec)   p_kst 3.453971e-01   p_cons 1.398095e-03   p_joint 5.116190e-03

Joint ci ratio: 5.312438e-02	ci left: 4.974588e-03	ci right 5.246995e-03	k: 5416	n:1060000
Cons ci ratio: 1.018243e-01	ci left: 1.325117e-03	ci right 1.468195e-03	k: 1479	n:1060000
KS ci ratio: 5.242603e-03	ci left: 3.444033e-01	ci right 3.462145e-01	k: 366027	n:1060000
CACNA2D3   1060000 perm   644 sec   (1646 perm/sec)   p_kst 3.453085e-01   p_cons 1.395283e-03   p_joint 5.109434e-03

Joint ci ratio: 4.596486e-02	ci left: 6.596186e-03	ci right 6.907428e-03	k: 7223	n:1070000
Cons ci ratio: 8.989846e-02	ci left: 1.694071e-03	ci right 1.854439e-03	k: 1897	n:1070000
KS ci ratio: 5.218501e-03	ci left: 3.443682e-01	ci right 3.461709e-01	k: 369438	n:1070000
CACNA2D3   1070000 perm   654 sec   (1637 perm/sec)   p_kst 3.452692e-01   p_cons 1.772897e-03   p_joint 6.750467e-03

Outputting figure to mutsig2_images.part000000000028/CACNA2D3.14_3428_1070000_0.34527_0.0017729_0.0067505.png
                gene_name: CACNA2D3
               theta_stop: 0.090 
                    nperm: 1070000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.0068 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0069 

Current progress: 15 percent done.
CACNA1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
Cons ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
CACNA1S   10000 perm   2 sec   (4526 perm/sec)   p_kst 2.470000e-02   p_cons 3.268000e-01   p_joint 3.530000e-02

Joint ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
Cons ci ratio: 3.978339e-02	ci left: 3.202503e-01	ci right 3.333001e-01	k: 6535	n:20000
KS ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
CACNA1S   20000 perm   5 sec   (4117 perm/sec)   p_kst 2.490000e-02   p_cons 3.267500e-01   p_joint 3.295000e-02

Joint ci ratio: 1.160036e-01	ci left: 3.453584e-02	ci right 3.882115e-02	k: 1099	n:30000
Cons ci ratio: 3.234570e-02	ci left: 3.233182e-01	ci right 3.339816e-01	k: 9859	n:30000
KS ci ratio: 1.415290e-01	ci left: 2.316622e-02	ci right 2.672660e-02	k: 747	n:30000
CACNA1S   30000 perm   8 sec   (3985 perm/sec)   p_kst 2.490000e-02   p_cons 3.286333e-01   p_joint 3.663333e-02

Joint ci ratio: 1.000618e-01	ci left: 3.509815e-02	ci right 3.881946e-02	k: 1477	n:40000
Cons ci ratio: 2.802437e-02	ci left: 3.238476e-01	ci right 3.330773e-01	k: 13138	n:40000
KS ci ratio: 1.286032e-01	ci left: 2.123838e-02	ci right 2.418148e-02	k: 907	n:40000
CACNA1S   40000 perm   10 sec   (3907 perm/sec)   p_kst 2.267500e-02   p_cons 3.284500e-01   p_joint 3.692500e-02

Joint ci ratio: 8.746584e-02	ci left: 3.692830e-02	ci right 4.032553e-02	k: 1930	n:50000
Cons ci ratio: 2.506207e-02	ci left: 3.244032e-01	ci right 3.326567e-01	k: 16426	n:50000
KS ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
CACNA1S   50000 perm   13 sec   (3839 perm/sec)   p_kst 2.264000e-02   p_cons 3.285200e-01   p_joint 3.860000e-02

Joint ci ratio: 8.482903e-02	ci left: 3.290694e-02	ci right 3.583833e-02	k: 2061	n:60000
Cons ci ratio: 2.293855e-02	ci left: 3.236120e-01	ci right 3.311380e-01	k: 19642	n:60000
KS ci ratio: 1.060043e-01	ci left: 2.110086e-02	ci right 2.347899e-02	k: 1336	n:60000
CACNA1S   60000 perm   16 sec   (3773 perm/sec)   p_kst 2.226667e-02   p_cons 3.273667e-01   p_joint 3.435000e-02

Joint ci ratio: 7.545086e-02	ci left: 3.572594e-02	ci right 3.854117e-02	k: 2598	n:70000
Cons ci ratio: 2.122997e-02	ci left: 3.240377e-01	ci right 3.310051e-01	k: 22926	n:70000
KS ci ratio: 9.810349e-02	ci left: 2.120491e-02	ci right 2.340637e-02	k: 1560	n:70000
CACNA1S   70000 perm   19 sec   (3713 perm/sec)   p_kst 2.228571e-02   p_cons 3.275143e-01   p_joint 3.711429e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1S.11_5798_70000_0.022286_0.32751_0.037114.png
                gene_name: CACNA1S
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 17 percent done.
CACNA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
CACNA1A   10000 perm   2 sec   (4217 perm/sec)   p_kst 1.555000e-01   p_cons 4.055000e-01   p_joint 3.297000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1A.10_7823_10000_0.1555_0.4055_0.3297.png
                gene_name: CACNA1A
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 19 percent done.
CACNA1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
Cons ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
KS ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
CACNA1F   10000 perm   2 sec   (4511 perm/sec)   p_kst 2.960000e-01   p_cons 2.343000e-01   p_joint 3.212000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1F.10_6126_10000_0.296_0.2343_0.3212.png
                gene_name: CACNA1F
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
CACNA1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
KS ci ratio: 3.289737e-02	ci left: 5.769745e-01	ci right 5.963749e-01	k: 5867	n:10000
CACNA1G   10000 perm   2 sec   (4401 perm/sec)   p_kst 5.867000e-01   p_cons 1.600000e-03   p_joint 3.910000e-02

Joint ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
Cons ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
KS ci ratio: 2.398780e-02	ci left: 5.648572e-01	ci right 5.786220e-01	k: 11435	n:20000
CACNA1G   20000 perm   5 sec   (4033 perm/sec)   p_kst 5.717500e-01   p_cons 1.900000e-03   p_joint 1.150000e-02

Joint ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
Cons ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
KS ci ratio: 1.921622e-02	ci left: 5.754593e-01	ci right 5.866583e-01	k: 17432	n:30000
CACNA1G   30000 perm   8 sec   (3865 perm/sec)   p_kst 5.810667e-01   p_cons 1.966667e-03   p_joint 2.386667e-02

Joint ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
Cons ci ratio: 4.150515e-01	ci left: 1.764827e-03	ci right 2.709769e-03	k: 88	n:40000
KS ci ratio: 1.668523e-02	ci left: 5.749447e-01	ci right 5.846437e-01	k: 23192	n:40000
CACNA1G   40000 perm   11 sec   (3755 perm/sec)   p_kst 5.798000e-01   p_cons 2.200000e-03   p_joint 1.557500e-02

Joint ci ratio: 1.556893e-01	ci left: 1.154454e-02	ci right 1.351266e-02	k: 625	n:50000
Cons ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
KS ci ratio: 1.484982e-02	ci left: 5.778824e-01	ci right 5.865481e-01	k: 29111	n:50000
CACNA1G   50000 perm   14 sec   (3680 perm/sec)   p_kst 5.822200e-01   p_cons 2.200000e-03   p_joint 1.250000e-02

Joint ci ratio: 1.304939e-01	ci left: 1.384899e-02	ci right 1.579835e-02	k: 888	n:60000
Cons ci ratio: 3.056794e-01	ci left: 2.316063e-03	ci right 3.166505e-03	k: 163	n:60000
KS ci ratio: 1.360121e-02	ci left: 5.766394e-01	ci right 5.845528e-01	k: 34836	n:60000
CACNA1G   60000 perm   17 sec   (3612 perm/sec)   p_kst 5.806000e-01   p_cons 2.716667e-03   p_joint 1.480000e-02

Joint ci ratio: 1.246622e-01	ci left: 1.305960e-02	ci right 1.480960e-02	k: 974	n:70000
Cons ci ratio: 2.832520e-01	ci left: 2.342463e-03	ci right 3.128231e-03	k: 190	n:70000
KS ci ratio: 1.258714e-02	ci left: 5.771343e-01	ci right 5.844590e-01	k: 40656	n:70000
CACNA1G   70000 perm   20 sec   (3555 perm/sec)   p_kst 5.808000e-01   p_cons 2.714286e-03   p_joint 1.391429e-02

Joint ci ratio: 1.063870e-01	ci left: 1.579898e-02	ci right 1.758632e-02	k: 1334	n:80000
Cons ci ratio: 2.575428e-01	ci left: 2.515860e-03	ci right 3.270906e-03	k: 230	n:80000
KS ci ratio: 1.178087e-02	ci left: 5.770963e-01	ci right 5.839478e-01	k: 46442	n:80000
CACNA1G   80000 perm   23 sec   (3503 perm/sec)   p_kst 5.805250e-01   p_cons 2.875000e-03   p_joint 1.667500e-02

Joint ci ratio: 9.890141e-02	ci left: 1.630640e-02	ci right 1.801381e-02	k: 1543	n:90000
Cons ci ratio: 2.418243e-01	ci left: 2.559238e-03	ci right 3.273399e-03	k: 261	n:90000
KS ci ratio: 1.107757e-02	ci left: 5.785915e-01	ci right 5.850477e-01	k: 52364	n:90000
CACNA1G   90000 perm   26 sec   (3456 perm/sec)   p_kst 5.818222e-01   p_cons 2.900000e-03   p_joint 1.714444e-02

Joint ci ratio: 9.967848e-02	ci left: 1.447029e-02	ci right 1.599802e-02	k: 1522	n:100000
Cons ci ratio: 2.286720e-01	ci left: 2.595060e-03	ci right 3.274279e-03	k: 292	n:100000
KS ci ratio: 1.052408e-02	ci left: 5.780648e-01	ci right 5.841905e-01	k: 58113	n:100000
CACNA1G   100000 perm   29 sec   (3411 perm/sec)   p_kst 5.811300e-01   p_cons 2.920000e-03   p_joint 1.522000e-02

Joint ci ratio: 8.917440e-02	ci left: 1.649322e-02	ci right 1.804147e-02	k: 1898	n:110000
Cons ci ratio: 2.226866e-01	ci left: 2.496364e-03	ci right 3.130302e-03	k: 308	n:110000
KS ci ratio: 1.003513e-02	ci left: 5.781686e-01	ci right 5.840089e-01	k: 63920	n:110000
CACNA1G   110000 perm   33 sec   (3366 perm/sec)   p_kst 5.810909e-01   p_cons 2.800000e-03   p_joint 1.725455e-02

Joint ci ratio: 9.157030e-02	ci left: 1.435242e-02	ci right 1.573783e-02	k: 1804	n:120000
Cons ci ratio: 2.129185e-01	ci left: 2.516825e-03	ci right 3.124265e-03	k: 337	n:120000
KS ci ratio: 9.608885e-03	ci left: 5.782440e-01	ci right 5.838354e-01	k: 69725	n:120000
CACNA1G   120000 perm   36 sec   (3323 perm/sec)   p_kst 5.810417e-01   p_cons 2.808333e-03   p_joint 1.503333e-02

Joint ci ratio: 8.677858e-02	ci left: 1.478277e-02	ci right 1.613127e-02	k: 2008	n:130000
Cons ci ratio: 2.048931e-01	ci left: 2.520053e-03	ci right 3.102476e-03	k: 364	n:130000
KS ci ratio: 8.808568e-03	ci left: 6.010427e-01	ci right 6.063681e-01	k: 78482	n:130000
CACNA1G   130000 perm   40 sec   (3281 perm/sec)   p_kst 6.037077e-01   p_cons 2.800000e-03   p_joint 1.544615e-02

Joint ci ratio: 8.621967e-02	ci left: 1.392227e-02	ci right 1.518367e-02	k: 2036	n:140000
Cons ci ratio: 1.982195e-01	ci left: 2.509609e-03	ci right 3.068443e-03	k: 389	n:140000
KS ci ratio: 8.492979e-03	ci left: 6.008676e-01	ci right 6.059996e-01	k: 84481	n:140000
CACNA1G   140000 perm   43 sec   (3241 perm/sec)   p_kst 6.034357e-01   p_cons 2.778571e-03   p_joint 1.454286e-02

Joint ci ratio: 8.391276e-02	ci left: 1.373789e-02	ci right 1.494765e-02	k: 2150	n:150000
Cons ci ratio: 1.952490e-01	ci left: 2.418350e-03	ci right 2.947832e-03	k: 401	n:150000
KS ci ratio: 8.206528e-03	ci left: 6.008657e-01	ci right 6.058236e-01	k: 90502	n:150000
CACNA1G   150000 perm   47 sec   (3202 perm/sec)   p_kst 6.033467e-01   p_cons 2.673333e-03   p_joint 1.433333e-02

Joint ci ratio: 7.961635e-02	ci left: 1.433042e-02	ci right 1.552475e-02	k: 2387	n:160000
Cons ci ratio: 1.890049e-01	ci left: 2.427838e-03	ci right 2.940447e-03	k: 428	n:160000
KS ci ratio: 7.954603e-03	ci left: 6.004224e-01	ci right 6.052238e-01	k: 96452	n:160000
CACNA1G   160000 perm   51 sec   (3165 perm/sec)   p_kst 6.028250e-01   p_cons 2.675000e-03   p_joint 1.491875e-02

Joint ci ratio: 7.486692e-02	ci left: 1.527606e-02	ci right 1.646995e-02	k: 2697	n:170000
Cons ci ratio: 1.825230e-01	ci left: 2.458903e-03	ci right 2.958297e-03	k: 459	n:170000
KS ci ratio: 7.717694e-03	ci left: 6.004575e-01	ci right 6.051154e-01	k: 102474	n:170000
CACNA1G   170000 perm   54 sec   (3127 perm/sec)   p_kst 6.027882e-01   p_cons 2.700000e-03   p_joint 1.586471e-02

Joint ci ratio: 7.358252e-02	ci left: 1.495073e-02	ci right 1.609829e-02	k: 2793	n:180000
Cons ci ratio: 1.770271e-01	ci left: 2.476161e-03	ci right 2.962297e-03	k: 488	n:180000
KS ci ratio: 7.497545e-03	ci left: 6.006964e-01	ci right 6.052226e-01	k: 108533	n:180000
CACNA1G   180000 perm   58 sec   (3091 perm/sec)   p_kst 6.029611e-01   p_cons 2.711111e-03   p_joint 1.551667e-02

Joint ci ratio: 7.297941e-02	ci left: 1.441170e-02	ci right 1.550843e-02	k: 2841	n:190000
Cons ci ratio: 1.736888e-01	ci left: 2.441444e-03	ci right 2.910777e-03	k: 507	n:190000
KS ci ratio: 7.297145e-03	ci left: 6.007853e-01	ci right 6.051905e-01	k: 114568	n:190000
CACNA1G   190000 perm   62 sec   (3058 perm/sec)   p_kst 6.029895e-01   p_cons 2.668421e-03   p_joint 1.495263e-02

Joint ci ratio: 7.237677e-02	ci left: 1.393154e-02	ci right 1.498260e-02	k: 2890	n:200000
Cons ci ratio: 1.692491e-01	ci left: 2.448579e-03	ci right 2.906025e-03	k: 534	n:200000
KS ci ratio: 7.112594e-03	ci left: 6.008267e-01	ci right 6.051203e-01	k: 120595	n:200000
CACNA1G   200000 perm   66 sec   (3026 perm/sec)   p_kst 6.029750e-01   p_cons 2.670000e-03   p_joint 1.445000e-02

Joint ci ratio: 6.813128e-02	ci left: 1.499002e-02	ci right 1.605198e-02	k: 3258	n:210000
Cons ci ratio: 1.654288e-01	ci left: 2.446042e-03	ci right 2.891672e-03	k: 559	n:210000
KS ci ratio: 6.943513e-03	ci left: 6.007177e-01	ci right 6.049080e-01	k: 126591	n:210000
CACNA1G   210000 perm   70 sec   (2994 perm/sec)   p_kst 6.028143e-01   p_cons 2.661905e-03   p_joint 1.551429e-02

Joint ci ratio: 6.842256e-02	ci left: 1.419676e-02	ci right 1.520699e-02	k: 3233	n:220000
Cons ci ratio: 1.613041e-01	ci left: 2.461289e-03	ci right 2.897433e-03	k: 588	n:220000
KS ci ratio: 6.781821e-03	ci left: 6.009109e-01	ci right 6.050045e-01	k: 132651	n:220000
CACNA1G   220000 perm   74 sec   (2963 perm/sec)   p_kst 6.029591e-01   p_cons 2.672727e-03   p_joint 1.469545e-02

Joint ci ratio: 7.002069e-02	ci left: 1.297252e-02	ci right 1.391806e-02	k: 3091	n:230000
Cons ci ratio: 1.567122e-01	ci left: 2.500400e-03	ci right 2.929676e-03	k: 623	n:230000
KS ci ratio: 6.634716e-03	ci left: 6.008142e-01	ci right 6.048180e-01	k: 138648	n:230000
CACNA1G   230000 perm   78 sec   (2933 perm/sec)   p_kst 6.028174e-01   p_cons 2.708696e-03   p_joint 1.343913e-02

Joint ci ratio: 6.481394e-02	ci left: 1.452568e-02	ci right 1.550275e-02	k: 3602	n:240000
Cons ci ratio: 1.537838e-01	ci left: 2.492331e-03	ci right 2.911489e-03	k: 647	n:240000
KS ci ratio: 6.497464e-03	ci left: 6.006764e-01	ci right 6.045961e-01	k: 144633	n:240000
CACNA1G   240000 perm   83 sec   (2905 perm/sec)   p_kst 6.026375e-01   p_cons 2.695833e-03   p_joint 1.500833e-02

Joint ci ratio: 6.138916e-02	ci left: 1.555510e-02	ci right 1.654417e-02	k: 4011	n:250000
Cons ci ratio: 1.509011e-01	ci left: 2.488826e-03	ci right 2.898839e-03	k: 672	n:250000
KS ci ratio: 6.365944e-03	ci left: 6.007346e-01	ci right 6.045750e-01	k: 150664	n:250000
CACNA1G   250000 perm   87 sec   (2877 perm/sec)   p_kst 6.026560e-01   p_cons 2.688000e-03   p_joint 1.604400e-02

Joint ci ratio: 6.393153e-02	ci left: 1.379793e-02	ci right 1.471294e-02	k: 3705	n:260000
Cons ci ratio: 1.482811e-01	ci left: 2.481954e-03	ci right 2.883106e-03	k: 696	n:260000
KS ci ratio: 6.237840e-03	ci left: 6.011163e-01	ci right 6.048814e-01	k: 156780	n:260000
CACNA1G   260000 perm   91 sec   (2847 perm/sec)   p_kst 6.030000e-01   p_cons 2.676923e-03   p_joint 1.425000e-02

Joint ci ratio: 6.431920e-02	ci left: 1.313369e-02	ci right 1.401013e-02	k: 3663	n:270000
Cons ci ratio: 1.447898e-01	ci left: 2.511341e-03	ci right 2.906861e-03	k: 730	n:270000
KS ci ratio: 6.308132e-03	ci left: 5.866558e-01	ci right 5.903719e-01	k: 158899	n:270000
CACNA1G   270000 perm   96 sec   (2818 perm/sec)   p_kst 5.885148e-01   p_cons 2.703704e-03   p_joint 1.356667e-02

Joint ci ratio: 6.355735e-02	ci left: 1.297737e-02	ci right 1.383274e-02	k: 3752	n:280000
Cons ci ratio: 1.417198e-01	ci left: 2.531842e-03	ci right 2.921421e-03	k: 762	n:280000
KS ci ratio: 6.193054e-03	ci left: 5.867996e-01	ci right 5.904485e-01	k: 164815	n:280000
CACNA1G   280000 perm   100 sec   (2789 perm/sec)   p_kst 5.886250e-01   p_cons 2.721429e-03   p_joint 1.340000e-02

Joint ci ratio: 6.534121e-02	ci left: 1.185789e-02	ci right 1.266224e-02	k: 3554	n:290000
Cons ci ratio: 1.389248e-01	ci left: 2.547683e-03	ci right 2.931328e-03	k: 793	n:290000
KS ci ratio: 6.085006e-03	ci left: 5.868582e-01	ci right 5.904435e-01	k: 170709	n:290000
CACNA1G   290000 perm   105 sec   (2759 perm/sec)   p_kst 5.886517e-01   p_cons 2.734483e-03   p_joint 1.225517e-02

Joint ci ratio: 5.512472e-02	ci left: 1.611950e-02	ci right 1.703654e-02	k: 4972	n:300000
Cons ci ratio: 1.363718e-01	ci left: 2.559317e-03	ci right 2.937057e-03	k: 823	n:300000
KS ci ratio: 5.983163e-03	ci left: 5.868533e-01	ci right 5.903783e-01	k: 176585	n:300000
CACNA1G   300000 perm   110 sec   (2730 perm/sec)   p_kst 5.886167e-01   p_cons 2.743333e-03   p_joint 1.657333e-02

Joint ci ratio: 4.993683e-02	ci left: 1.900338e-02	ci right 1.997982e-02	k: 6041	n:310000
Cons ci ratio: 1.334851e-01	ci left: 2.588970e-03	ci right 2.962357e-03	k: 859	n:310000
KS ci ratio: 5.887249e-03	ci left: 5.867685e-01	ci right 5.902363e-01	k: 182436	n:310000
CACNA1G   310000 perm   115 sec   (2703 perm/sec)   p_kst 5.885032e-01   p_cons 2.770968e-03   p_joint 1.948710e-02

Joint ci ratio: 5.059628e-02	ci left: 1.794642e-02	ci right 1.888108e-02	k: 5891	n:320000
Cons ci ratio: 1.318860e-01	ci left: 2.571510e-03	ci right 2.937587e-03	k: 880	n:320000
KS ci ratio: 5.797075e-03	ci left: 5.865831e-01	ci right 5.899965e-01	k: 188253	n:320000
CACNA1G   320000 perm   120 sec   (2677 perm/sec)   p_kst 5.882906e-01   p_cons 2.750000e-03   p_joint 1.840937e-02

Joint ci ratio: 4.820466e-02	ci left: 1.917167e-02	ci right 2.012164e-02	k: 6482	n:330000
Cons ci ratio: 1.296245e-01	ci left: 2.584453e-03	ci right 2.945578e-03	k: 911	n:330000
KS ci ratio: 5.709598e-03	ci left: 5.865216e-01	ci right 5.898829e-01	k: 194107	n:330000
CACNA1G   330000 perm   124 sec   (2652 perm/sec)   p_kst 5.882030e-01   p_cons 2.760606e-03   p_joint 1.964242e-02

Joint ci ratio: 4.860239e-02	ci left: 1.831705e-02	ci right 1.923236e-02	k: 6382	n:340000
Cons ci ratio: 1.279525e-01	ci left: 2.576753e-03	ci right 2.931806e-03	k: 935	n:340000
KS ci ratio: 5.624599e-03	ci left: 5.865817e-01	ci right 5.898932e-01	k: 200001	n:340000
CACNA1G   340000 perm   129 sec   (2626 perm/sec)   p_kst 5.882382e-01   p_cons 2.750000e-03   p_joint 1.877059e-02

Joint ci ratio: 4.919185e-02	ci left: 1.738145e-02	ci right 1.826084e-02	k: 6236	n:350000
Cons ci ratio: 1.260805e-01	ci left: 2.580590e-03	ci right 2.930580e-03	k: 963	n:350000
KS ci ratio: 5.542370e-03	ci left: 5.867189e-01	ci right 5.899825e-01	k: 205923	n:350000
CACNA1G   350000 perm   135 sec   (2601 perm/sec)   p_kst 5.883514e-01   p_cons 2.751429e-03   p_joint 1.781714e-02

Joint ci ratio: 4.918419e-02	ci left: 1.691225e-02	ci right 1.776777e-02	k: 6241	n:360000
Cons ci ratio: 1.245404e-01	ci left: 2.573483e-03	ci right 2.917931e-03	k: 987	n:360000
KS ci ratio: 5.465494e-03	ci left: 5.866847e-01	ci right 5.899028e-01	k: 211786	n:360000
CACNA1G   360000 perm   140 sec   (2578 perm/sec)   p_kst 5.882944e-01   p_cons 2.741667e-03   p_joint 1.733611e-02

Joint ci ratio: 5.043469e-02	ci left: 1.565953e-02	ci right 1.647240e-02	k: 5943	n:370000
Cons ci ratio: 1.230553e-01	ci left: 2.566785e-03	ci right 2.905942e-03	k: 1011	n:370000
KS ci ratio: 5.390287e-03	ci left: 5.867825e-01	ci right 5.899566e-01	k: 217697	n:370000
CACNA1G   370000 perm   145 sec   (2554 perm/sec)   p_kst 5.883703e-01   p_cons 2.732432e-03   p_joint 1.606216e-02

Joint ci ratio: 4.793452e-02	ci left: 1.688000e-02	ci right 1.771159e-02	k: 6571	n:380000
Cons ci ratio: 1.213874e-01	ci left: 2.570670e-03	ci right 2.905405e-03	k: 1039	n:380000
KS ci ratio: 5.317639e-03	ci left: 5.869176e-01	ci right 5.900495e-01	k: 223624	n:380000
CACNA1G   380000 perm   150 sec   (2533 perm/sec)   p_kst 5.884842e-01   p_cons 2.734211e-03   p_joint 1.729211e-02

Joint ci ratio: 4.732294e-02	ci left: 1.688042e-02	ci right 1.770113e-02	k: 6742	n:390000
Cons ci ratio: 1.202949e-01	ci left: 2.551999e-03	ci right 2.881099e-03	k: 1058	n:390000
KS ci ratio: 5.247267e-03	ci left: 5.870999e-01	ci right 5.901911e-01	k: 229572	n:390000
CACNA1G   390000 perm   155 sec   (2512 perm/sec)   p_kst 5.886462e-01   p_cons 2.712821e-03   p_joint 1.728718e-02

Joint ci ratio: 4.667925e-02	ci left: 1.692043e-02	ci right 1.773159e-02	k: 6929	n:400000
Cons ci ratio: 1.184081e-01	ci left: 2.570663e-03	ci right 2.896607e-03	k: 1092	n:400000
KS ci ratio: 5.184430e-03	ci left: 5.868230e-01	ci right 5.898757e-01	k: 235340	n:400000
CACNA1G   400000 perm   161 sec   (2490 perm/sec)   p_kst 5.883500e-01   p_cons 2.730000e-03   p_joint 1.732250e-02

Joint ci ratio: 4.850065e-02	ci left: 1.530241e-02	ci right 1.606543e-02	k: 6429	n:410000
Cons ci ratio: 1.170770e-01	ci left: 2.567143e-03	ci right 2.888729e-03	k: 1117	n:410000
KS ci ratio: 5.121215e-03	ci left: 5.868039e-01	ci right 5.898192e-01	k: 241208	n:410000
CACNA1G   410000 perm   166 sec   (2470 perm/sec)   p_kst 5.883122e-01   p_cons 2.724390e-03   p_joint 1.568049e-02

Joint ci ratio: 4.794504e-02	ci left: 1.529090e-02	ci right 1.604437e-02	k: 6579	n:420000
Cons ci ratio: 1.158407e-01	ci left: 2.561499e-03	ci right 2.878757e-03	k: 1141	n:420000
KS ci ratio: 5.062596e-03	ci left: 5.865621e-01	ci right 5.895415e-01	k: 246982	n:420000
CACNA1G   420000 perm   171 sec   (2449 perm/sec)   p_kst 5.880524e-01   p_cons 2.716667e-03   p_joint 1.566429e-02

Joint ci ratio: 4.799467e-02	ci left: 1.490996e-02	ci right 1.564543e-02	k: 6568	n:430000
Cons ci ratio: 1.146428e-01	ci left: 2.556134e-03	ci right 2.869232e-03	k: 1165	n:430000
KS ci ratio: 5.006061e-03	ci left: 5.863200e-01	ci right 5.892648e-01	k: 252751	n:430000
CACNA1G   430000 perm   177 sec   (2429 perm/sec)   p_kst 5.877930e-01   p_cons 2.709302e-03   p_joint 1.527442e-02

Joint ci ratio: 4.743098e-02	ci left: 1.492366e-02	ci right 1.565093e-02	k: 6725	n:440000
Cons ci ratio: 1.132429e-01	ci left: 2.562071e-03	ci right 2.871808e-03	k: 1194	n:440000
KS ci ratio: 4.946873e-03	ci left: 5.865303e-01	ci right 5.894412e-01	k: 258714	n:440000
CACNA1G   440000 perm   183 sec   (2410 perm/sec)   p_kst 5.879864e-01   p_cons 2.713636e-03   p_joint 1.528409e-02

Joint ci ratio: 4.713770e-02	ci left: 1.477865e-02	ci right 1.549428e-02	k: 6810	n:450000
Cons ci ratio: 1.122616e-01	ci left: 2.550486e-03	ci right 2.855973e-03	k: 1215	n:450000
KS ci ratio: 4.891260e-03	ci left: 5.865803e-01	ci right 5.894586e-01	k: 264609	n:450000
CACNA1G   450000 perm   188 sec   (2390 perm/sec)   p_kst 5.880200e-01   p_cons 2.700000e-03   p_joint 1.513333e-02

Joint ci ratio: 4.670895e-02	ci left: 1.472807e-02	ci right 1.543458e-02	k: 6936	n:460000
Cons ci ratio: 1.112152e-01	ci left: 2.543642e-03	ci right 2.845284e-03	k: 1238	n:460000
KS ci ratio: 4.837850e-03	ci left: 5.865912e-01	ci right 5.894381e-01	k: 270487	n:460000
CACNA1G   460000 perm   194 sec   (2371 perm/sec)   p_kst 5.880152e-01   p_cons 2.691304e-03   p_joint 1.507826e-02

Joint ci ratio: 4.677134e-02	ci left: 1.438100e-02	ci right 1.507181e-02	k: 6920	n:470000
Cons ci ratio: 1.101101e-01	ci left: 2.541241e-03	ci right 2.839410e-03	k: 1263	n:470000
KS ci ratio: 4.786320e-03	ci left: 5.865849e-01	ci right 5.894013e-01	k: 276357	n:470000
CACNA1G   470000 perm   200 sec   (2351 perm/sec)   p_kst 5.879936e-01   p_cons 2.687234e-03   p_joint 1.472340e-02

Joint ci ratio: 4.638578e-02	ci left: 1.432024e-02	ci right 1.500231e-02	k: 7036	n:480000
Cons ci ratio: 1.091223e-01	ci left: 2.534901e-03	ci right 2.829486e-03	k: 1286	n:480000
KS ci ratio: 4.736159e-03	ci left: 5.866039e-01	ci right 5.893908e-01	k: 282239	n:480000
CACNA1G   480000 perm   206 sec   (2331 perm/sec)   p_kst 5.879979e-01   p_cons 2.679167e-03   p_joint 1.465833e-02

Joint ci ratio: 4.600631e-02	ci left: 1.426399e-02	ci right 1.493768e-02	k: 7153	n:490000
Cons ci ratio: 1.079953e-01	ci left: 2.536775e-03	ci right 2.828339e-03	k: 1313	n:490000
KS ci ratio: 4.687976e-03	ci left: 5.865775e-01	ci right 5.893358e-01	k: 288099	n:490000
CACNA1G   490000 perm   212 sec   (2313 perm/sec)   p_kst 5.879571e-01   p_cons 2.679592e-03   p_joint 1.459796e-02

Joint ci ratio: 4.191770e-02	ci left: 1.682954e-02	ci right 1.755207e-02	k: 8594	n:500000
Cons ci ratio: 1.003597e-01	ci left: 2.889291e-03	ci right 3.196512e-03	k: 1520	n:500000
KS ci ratio: 4.520139e-03	ci left: 5.993069e-01	ci right 6.020239e-01	k: 300333	n:500000
CACNA1G   500000 perm   218 sec   (2295 perm/sec)   p_kst 6.006660e-01   p_cons 3.040000e-03   p_joint 1.718800e-02

Joint ci ratio: 4.164729e-02	ci left: 1.671879e-02	ci right 1.743181e-02	k: 8707	n:510000
Cons ci ratio: 9.916023e-02	ci left: 2.903379e-03	ci right 3.208193e-03	k: 1557	n:510000
KS ci ratio: 4.477153e-03	ci left: 5.991542e-01	ci right 6.018446e-01	k: 306255	n:510000
CACNA1G   510000 perm   224 sec   (2277 perm/sec)   p_kst 6.005000e-01   p_cons 3.052941e-03   p_joint 1.707255e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1G.10_7553_510000_0.6005_0.0030529_0.017073.png
                gene_name: CACNA1G
               theta_stop: 0.099 
                    nperm: 510000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0031 
      ci_cons_bounds_left: 0.0029 
     ci_cons_bounds_right: 0.0032 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.017 

Current progress: 23 percent done.
CACHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
CACHD1   10000 perm   2 sec   (5261 perm/sec)   p_kst 5.808000e-01   p_cons 8.500000e-02   p_joint 1.560000e-01

Joint ci ratio: 5.327993e-02	ci left: 2.072932e-01	ci right 2.186903e-01	k: 4259	n:20000
Cons ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
KS ci ratio: 2.368063e-02	ci left: 5.711695e-01	ci right 5.849078e-01	k: 11561	n:20000
CACHD1   20000 perm   4 sec   (4759 perm/sec)   p_kst 5.780500e-01   p_cons 1.000500e-01   p_joint 2.129500e-01

Outputting figure to mutsig2_images.part000000000028/CACHD1.9_3780_20000_0.57805_0.10005_0.21295.png
                gene_name: CACHD1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 26 percent done.
CACNA1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
CACNA1H   10000 perm   2 sec   (4614 perm/sec)   p_kst 7.616000e-01   p_cons 1.120000e-01   p_joint 3.414000e-01

Joint ci ratio: 3.930460e-02	ci left: 3.255726e-01	ci right 3.386762e-01	k: 6642	n:20000
Cons ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
KS ci ratio: 1.657086e-02	ci left: 7.305370e-01	ci right 7.427941e-01	k: 14734	n:20000
CACNA1H   20000 perm   5 sec   (4216 perm/sec)   p_kst 7.367000e-01   p_cons 1.109000e-01   p_joint 3.321000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1H.9_7198_20000_0.7367_0.1109_0.3321.png
                gene_name: CACNA1H
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 28 percent done.
C9orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.371419e-02	ci left: 8.847277e-01	ci right 8.970435e-01	k: 8910	n:10000
KS ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
C9orf93   10000 perm   2 sec   (5096 perm/sec)   p_kst 8.570000e-01   p_cons 8.910000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf93.7_4081_10000_0.857_0.891_1.png
                gene_name: C9orf93
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
CACNA1I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
Cons ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
KS ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
CACNA1I   10000 perm   2 sec   (4492 perm/sec)   p_kst 5.544000e-01   p_cons 7.083000e-01   p_joint 7.176000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1I.7_6820_10000_0.5544_0.7083_0.7176.png
                gene_name: CACNA1I
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 32 percent done.
CACNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
Cons ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
CACNB2   10000 perm   2 sec   (5277 perm/sec)   p_kst 2.710000e-01   p_cons 2.288000e-01   p_joint 4.350000e-01

Outputting figure to mutsig2_images.part000000000028/CACNB2.7_2349_10000_0.271_0.2288_0.435.png
                gene_name: CACNB2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 34 percent done.
CACNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
CACNG3   10000 perm   1 sec   (6765 perm/sec)   p_kst 6.598000e-01   p_cons 8.860000e-02   p_joint 2.857000e-01

Joint ci ratio: 4.790740e-02	ci left: 2.447544e-01	ci right 2.568181e-01	k: 5015	n:20000
Cons ci ratio: 9.102956e-02	ci left: 8.097465e-02	ci right 8.874654e-02	k: 1696	n:20000
KS ci ratio: 1.998047e-02	ci left: 6.514282e-01	ci right 6.646259e-01	k: 13161	n:20000
CACNG3   20000 perm   3 sec   (6031 perm/sec)   p_kst 6.580500e-01   p_cons 8.480000e-02   p_joint 2.507500e-01

Outputting figure to mutsig2_images.part000000000028/CACNG3.7_964_20000_0.65805_0.0848_0.25075.png
                gene_name: CACNG3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 36 percent done.
CA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
Cons ci ratio: 3.686500e-02	ci left: 5.207608e-01	ci right 5.404213e-01	k: 5306	n:10000
KS ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
CA10   10000 perm   1 sec   (6690 perm/sec)   p_kst 5.271000e-01   p_cons 5.306000e-01   p_joint 6.404000e-01

Outputting figure to mutsig2_images.part000000000028/CA10.6_1023_10000_0.5271_0.5306_0.6404.png
                gene_name: CA10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 38 percent done.
CACNA2D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
CACNA2D4   10000 perm   2 sec   (5363 perm/sec)   p_kst 7.130000e-02   p_cons 5.560000e-02   p_joint 3.600000e-02

Joint ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
Cons ci ratio: 1.143993e-01	ci left: 5.226943e-02	ci right 5.866058e-02	k: 1108	n:20000
KS ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
CACNA2D4   20000 perm   4 sec   (4872 perm/sec)   p_kst 6.980000e-02   p_cons 5.540000e-02   p_joint 7.520000e-02

Joint ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
Cons ci ratio: 9.357116e-02	ci left: 5.267489e-02	ci right 5.787832e-02	k: 1657	n:30000
KS ci ratio: 8.221867e-02	ci left: 6.753021e-02	ci right 7.335331e-02	k: 2112	n:30000
CACNA2D4   30000 perm   6 sec   (4684 perm/sec)   p_kst 7.040000e-02   p_cons 5.523333e-02   p_joint 5.256667e-02

Outputting figure to mutsig2_images.part000000000028/CACNA2D4.6_3566_30000_0.0704_0.055233_0.052567.png
                gene_name: CACNA2D4
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 40 percent done.
CACNG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
Cons ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
KS ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
CACNG5   10000 perm   2 sec   (6587 perm/sec)   p_kst 4.970000e-01   p_cons 3.500000e-03   p_joint 2.000000e-02

Joint ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
Cons ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
KS ci ratio: 2.792235e-02	ci left: 4.893466e-01	ci right 5.032544e-01	k: 9926	n:20000
CACNG5   20000 perm   3 sec   (5878 perm/sec)   p_kst 4.963000e-01   p_cons 4.200000e-03   p_joint 3.265000e-02

Joint ci ratio: 1.215618e-01	ci left: 3.146011e-02	ci right 3.556422e-02	k: 1004	n:30000
Cons ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
KS ci ratio: 2.232828e-02	ci left: 5.010588e-01	ci right 5.124065e-01	k: 15202	n:30000
CACNG5   30000 perm   5 sec   (5607 perm/sec)   p_kst 5.067333e-01   p_cons 4.266667e-03   p_joint 3.346667e-02

Joint ci ratio: 8.286984e-02	ci left: 5.077551e-02	ci right 5.518967e-02	k: 2118	n:40000
Cons ci ratio: 3.054686e-01	ci left: 3.474429e-03	ci right 4.749221e-03	k: 163	n:40000
KS ci ratio: 1.944505e-02	ci left: 4.990376e-01	ci right 5.088618e-01	k: 20158	n:40000
CACNG5   40000 perm   7 sec   (5433 perm/sec)   p_kst 5.039500e-01   p_cons 4.075000e-03   p_joint 5.295000e-02

Joint ci ratio: 9.296276e-02	ci left: 3.274138e-02	ci right 3.595298e-02	k: 1716	n:50000
Cons ci ratio: 2.732201e-01	ci left: 3.540222e-03	ci right 4.678540e-03	k: 204	n:50000
KS ci ratio: 1.741423e-02	ci left: 4.989274e-01	ci right 5.077122e-01	k: 25166	n:50000
CACNG5   50000 perm   9 sec   (5296 perm/sec)   p_kst 5.033200e-01   p_cons 4.080000e-03   p_joint 3.432000e-02

Joint ci ratio: 7.947485e-02	ci left: 3.741590e-02	ci right 4.052890e-02	k: 2337	n:60000
Cons ci ratio: 2.552092e-01	ci left: 3.417072e-03	ci right 4.431840e-03	k: 234	n:60000
KS ci ratio: 1.586484e-02	ci left: 5.003243e-01	ci right 5.083420e-01	k: 30260	n:60000
CACNG5   60000 perm   12 sec   (5174 perm/sec)   p_kst 5.043333e-01   p_cons 3.900000e-03   p_joint 3.895000e-02

Joint ci ratio: 6.474763e-02	ci left: 4.814381e-02	ci right 5.137935e-02	k: 3482	n:70000
Cons ci ratio: 2.372210e-01	ci left: 3.424917e-03	ci right 4.359804e-03	k: 271	n:70000
KS ci ratio: 1.466135e-02	ci left: 5.015318e-01	ci right 5.089535e-01	k: 35367	n:70000
CACNG5   70000 perm   14 sec   (5067 perm/sec)   p_kst 5.052429e-01   p_cons 3.871429e-03   p_joint 4.974286e-02

Joint ci ratio: 7.889157e-02	ci left: 2.875517e-02	ci right 3.112908e-02	k: 2394	n:80000
Cons ci ratio: 2.211363e-01	ci left: 3.479921e-03	ci right 4.356659e-03	k: 312	n:80000
KS ci ratio: 1.376821e-02	ci left: 4.998165e-01	ci right 5.067583e-01	k: 40263	n:80000
CACNG5   80000 perm   16 sec   (4966 perm/sec)   p_kst 5.032875e-01   p_cons 3.900000e-03   p_joint 2.992500e-02

Joint ci ratio: 6.147728e-02	ci left: 4.189188e-02	ci right 4.455988e-02	k: 3889	n:90000
Cons ci ratio: 2.088246e-01	ci left: 3.492769e-03	ci right 4.317491e-03	k: 350	n:90000
KS ci ratio: 1.301082e-02	ci left: 4.988612e-01	ci right 5.054054e-01	k: 45192	n:90000
CACNG5   90000 perm   18 sec   (4870 perm/sec)   p_kst 5.021333e-01   p_cons 3.888889e-03   p_joint 4.321111e-02

Joint ci ratio: 6.243894e-02	ci left: 3.673474e-02	ci right 3.911216e-02	k: 3791	n:100000
Cons ci ratio: 1.981085e-01	ci left: 3.513637e-03	ci right 4.295571e-03	k: 389	n:100000
KS ci ratio: 1.232475e-02	ci left: 4.997760e-01	ci right 5.059838e-01	k: 50288	n:100000
CACNG5   100000 perm   21 sec   (4775 perm/sec)   p_kst 5.028800e-01   p_cons 3.890000e-03   p_joint 3.791000e-02

Joint ci ratio: 6.683190e-02	ci left: 2.931278e-02	ci right 3.134845e-02	k: 3335	n:110000
Cons ci ratio: 1.927617e-01	ci left: 3.384408e-03	ci right 4.114868e-03	k: 411	n:110000
KS ci ratio: 1.174496e-02	ci left: 5.001862e-01	ci right 5.061046e-01	k: 55346	n:110000
CACNG5   110000 perm   23 sec   (4686 perm/sec)   p_kst 5.031455e-01   p_cons 3.736364e-03   p_joint 3.031818e-02

Joint ci ratio: 6.342517e-02	ci left: 2.987066e-02	ci right 3.183543e-02	k: 3701	n:120000
Cons ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
KS ci ratio: 1.123249e-02	ci left: 5.008669e-01	ci right 5.065329e-01	k: 60444	n:120000
CACNG5   120000 perm   26 sec   (4605 perm/sec)   p_kst 5.037000e-01   p_cons 3.733333e-03   p_joint 3.084167e-02

Joint ci ratio: 6.407516e-02	ci left: 2.708719e-02	ci right 2.888779e-02	k: 3637	n:130000
Cons ci ratio: 1.762122e-01	ci left: 3.458096e-03	ci right 4.133565e-03	k: 492	n:130000
KS ci ratio: 1.080447e-02	ci left: 5.003936e-01	ci right 5.058371e-01	k: 65405	n:130000
CACNG5   130000 perm   29 sec   (4530 perm/sec)   p_kst 5.031154e-01   p_cons 3.784615e-03   p_joint 2.797692e-02

Joint ci ratio: 6.175125e-02	ci left: 2.711391e-02	ci right 2.884857e-02	k: 3916	n:140000
Cons ci ratio: 1.691516e-01	ci left: 3.498133e-03	ci right 4.151253e-03	k: 534	n:140000
KS ci ratio: 1.040345e-02	ci left: 5.008773e-01	ci right 5.061225e-01	k: 70490	n:140000
CACNG5   140000 perm   31 sec   (4455 perm/sec)   p_kst 5.035000e-01   p_cons 3.814286e-03   p_joint 2.797143e-02

Joint ci ratio: 6.177810e-02	ci left: 2.533184e-02	ci right 2.695321e-02	k: 3920	n:150000
Cons ci ratio: 1.483487e-01	ci left: 4.289515e-03	ci right 4.983180e-03	k: 694	n:150000
KS ci ratio: 1.005954e-02	ci left: 5.005264e-01	ci right 5.055935e-01	k: 75459	n:150000
CACNG5   150000 perm   34 sec   (4383 perm/sec)   p_kst 5.030600e-01   p_cons 4.626667e-03   p_joint 2.613333e-02

Joint ci ratio: 5.972408e-02	ci left: 2.543513e-02	ci right 2.700711e-02	k: 4194	n:160000
Cons ci ratio: 1.442584e-01	ci left: 4.262265e-03	ci right 4.930882e-03	k: 734	n:160000
KS ci ratio: 9.741163e-03	ci left: 5.005532e-01	ci right 5.054592e-01	k: 80481	n:160000
CACNG5   160000 perm   37 sec   (4313 perm/sec)   p_kst 5.030062e-01   p_cons 4.587500e-03   p_joint 2.621250e-02

Joint ci ratio: 5.934487e-02	ci left: 2.428040e-02	ci right 2.577115e-02	k: 4253	n:170000
Cons ci ratio: 1.397660e-01	ci left: 4.283868e-03	ci right 4.933204e-03	k: 782	n:170000
KS ci ratio: 9.461453e-03	ci left: 5.000379e-01	ci right 5.047973e-01	k: 85411	n:170000
CACNG5   170000 perm   40 sec   (4247 perm/sec)   p_kst 5.024176e-01   p_cons 4.600000e-03   p_joint 2.501765e-02

Joint ci ratio: 5.777975e-02	ci left: 2.421243e-02	ci right 2.565848e-02	k: 4487	n:180000
Cons ci ratio: 1.350982e-01	ci left: 4.340935e-03	ci right 4.975180e-03	k: 837	n:180000
KS ci ratio: 9.192655e-03	ci left: 5.002263e-01	ci right 5.048514e-01	k: 90457	n:180000
CACNG5   180000 perm   43 sec   (4185 perm/sec)   p_kst 5.025389e-01   p_cons 4.650000e-03   p_joint 2.492778e-02

Joint ci ratio: 5.285342e-02	ci left: 2.739267e-02	ci right 2.888493e-02	k: 5345	n:190000
Cons ci ratio: 1.315365e-01	ci left: 4.346497e-03	ci right 4.963503e-03	k: 883	n:190000
KS ci ratio: 8.947419e-03	ci left: 5.002912e-01	ci right 5.047929e-01	k: 95483	n:190000
CACNG5   190000 perm   46 sec   (4125 perm/sec)   p_kst 5.025421e-01   p_cons 4.647368e-03   p_joint 2.813158e-02

Joint ci ratio: 4.949019e-02	ci left: 2.966176e-02	ci right 3.117189e-02	k: 6082	n:200000
Cons ci ratio: 1.278287e-01	ci left: 4.380743e-03	ci right 4.983752e-03	k: 935	n:200000
KS ci ratio: 8.719598e-03	ci left: 5.004212e-01	ci right 5.048087e-01	k: 100523	n:200000
CACNG5   200000 perm   49 sec   (4066 perm/sec)   p_kst 5.026150e-01   p_cons 4.675000e-03   p_joint 3.041000e-02

Joint ci ratio: 4.291705e-02	ci left: 3.738890e-02	ci right 3.903340e-02	k: 8023	n:210000
Cons ci ratio: 1.242284e-01	ci left: 4.425791e-03	ci right 5.016580e-03	k: 990	n:210000
KS ci ratio: 8.506392e-03	ci left: 5.006544e-01	ci right 5.049360e-01	k: 105587	n:210000
CACNG5   210000 perm   52 sec   (4007 perm/sec)   p_kst 5.027952e-01   p_cons 4.714286e-03   p_joint 3.820476e-02

Joint ci ratio: 4.272149e-02	ci left: 3.607110e-02	ci right 3.765022e-02	k: 8108	n:220000
Cons ci ratio: 1.220946e-01	ci left: 4.378801e-03	ci right 4.952551e-03	k: 1025	n:220000
KS ci ratio: 8.312478e-03	ci left: 5.006039e-01	ci right 5.047870e-01	k: 110593	n:220000
CACNG5   220000 perm   56 sec   (3950 perm/sec)   p_kst 5.026955e-01   p_cons 4.659091e-03   p_joint 3.685455e-02

Joint ci ratio: 4.444965e-02	ci left: 3.198118e-02	ci right 3.343932e-02	k: 7522	n:230000
Cons ci ratio: 1.197273e-01	ci left: 4.361285e-03	ci right 4.920876e-03	k: 1066	n:230000
KS ci ratio: 8.135633e-03	ci left: 5.002892e-01	ci right 5.043803e-01	k: 115537	n:230000
CACNG5   230000 perm   59 sec   (3897 perm/sec)   p_kst 5.023348e-01   p_cons 4.634783e-03   p_joint 3.270435e-02

Joint ci ratio: 4.130232e-02	ci left: 3.542735e-02	ci right 3.692554e-02	k: 8681	n:240000
Cons ci ratio: 1.175459e-01	ci left: 4.341283e-03	ci right 4.887453e-03	k: 1106	n:240000
KS ci ratio: 7.959320e-03	ci left: 5.006475e-01	ci right 5.046524e-01	k: 120636	n:240000
CACNG5   240000 perm   62 sec   (3843 perm/sec)   p_kst 5.026500e-01   p_cons 4.608333e-03   p_joint 3.617083e-02

Joint ci ratio: 3.918168e-02	ci left: 3.774124e-02	ci right 3.925349e-02	k: 9623	n:250000
Cons ci ratio: 1.153785e-01	ci left: 4.330736e-03	ci right 4.864849e-03	k: 1148	n:250000
KS ci ratio: 7.795486e-03	ci left: 5.008820e-01	ci right 5.048059e-01	k: 125711	n:250000
CACNG5   250000 perm   66 sec   (3791 perm/sec)   p_kst 5.028440e-01   p_cons 4.592000e-03   p_joint 3.849200e-02

Joint ci ratio: 3.985044e-02	ci left: 3.516529e-02	ci right 3.659892e-02	k: 9328	n:260000
Cons ci ratio: 1.132313e-01	ci left: 4.328562e-03	ci right 4.851807e-03	k: 1192	n:260000
KS ci ratio: 7.636960e-03	ci left: 5.013877e-01	ci right 5.052353e-01	k: 130861	n:260000
CACNG5   260000 perm   70 sec   (3741 perm/sec)   p_kst 5.033115e-01   p_cons 4.584615e-03   p_joint 3.587692e-02

Joint ci ratio: 4.031411e-02	ci left: 3.315085e-02	ci right 3.451844e-02	k: 9134	n:270000
Cons ci ratio: 1.111094e-01	ci left: 4.333835e-03	ci right 4.847258e-03	k: 1238	n:270000
KS ci ratio: 7.494541e-03	ci left: 5.014011e-01	ci right 5.051766e-01	k: 135888	n:270000
CACNG5   270000 perm   73 sec   (3691 perm/sec)   p_kst 5.032889e-01   p_cons 4.585185e-03   p_joint 3.382963e-02

Joint ci ratio: 3.983716e-02	ci left: 3.275874e-02	ci right 3.409379e-02	k: 9358	n:280000
Cons ci ratio: 1.090174e-01	ci left: 4.345766e-03	ci right 4.850286e-03	k: 1286	n:280000
KS ci ratio: 7.359489e-03	ci left: 5.014355e-01	ci right 5.051430e-01	k: 140921	n:280000
CACNG5   280000 perm   77 sec   (3644 perm/sec)   p_kst 5.032893e-01   p_cons 4.592857e-03   p_joint 3.342143e-02

Joint ci ratio: 4.080768e-02	ci left: 3.020828e-02	ci right 3.147008e-02	k: 8942	n:290000
Cons ci ratio: 1.070392e-01	ci left: 4.356959e-03	ci right 4.853021e-03	k: 1334	n:290000
KS ci ratio: 7.234627e-03	ci left: 5.012509e-01	ci right 5.048938e-01	k: 145891	n:290000
CACNG5   290000 perm   81 sec   (3598 perm/sec)   p_kst 5.030724e-01   p_cons 4.600000e-03   p_joint 3.083448e-02

Joint ci ratio: 3.985669e-02	ci left: 3.061375e-02	ci right 3.186200e-02	k: 9370	n:300000
Cons ci ratio: 1.053948e-01	ci left: 4.348006e-03	ci right 4.834973e-03	k: 1376	n:300000
KS ci ratio: 7.114107e-03	ci left: 5.012058e-01	ci right 5.047875e-01	k: 150899	n:300000
CACNG5   300000 perm   84 sec   (3553 perm/sec)   p_kst 5.029967e-01   p_cons 4.586667e-03   p_joint 3.123333e-02

Joint ci ratio: 4.005184e-02	ci left: 2.937353e-02	ci right 3.057721e-02	k: 9291	n:310000
Cons ci ratio: 1.037506e-01	ci left: 4.345971e-03	ci right 4.824653e-03	k: 1420	n:310000
KS ci ratio: 7.000183e-03	ci left: 5.011093e-01	ci right 5.046326e-01	k: 155890	n:310000
CACNG5   310000 perm   88 sec   (3508 perm/sec)   p_kst 5.028710e-01   p_cons 4.580645e-03   p_joint 2.997097e-02

Joint ci ratio: 3.638312e-02	ci left: 3.436900e-02	ci right 3.564569e-02	k: 11201	n:320000
Cons ci ratio: 1.021810e-01	ci left: 4.344118e-03	ci right 4.814923e-03	k: 1464	n:320000
KS ci ratio: 6.891821e-03	ci left: 5.010004e-01	ci right 5.044683e-01	k: 160875	n:320000
CACNG5   320000 perm   92 sec   (3463 perm/sec)   p_kst 5.027344e-01   p_cons 4.575000e-03   p_joint 3.500313e-02

Joint ci ratio: 3.536554e-02	ci left: 3.525880e-02	ci right 3.653118e-02	k: 11844	n:330000
Cons ci ratio: 1.007476e-01	ci left: 4.336520e-03	ci right 4.799519e-03	k: 1506	n:330000
KS ci ratio: 6.787146e-03	ci left: 5.009865e-01	ci right 5.044013e-01	k: 165889	n:330000
CACNG5   330000 perm   97 sec   (3420 perm/sec)   p_kst 5.026939e-01   p_cons 4.563636e-03   p_joint 3.589091e-02

Joint ci ratio: 3.645221e-02	ci left: 3.229419e-02	ci right 3.349614e-02	k: 11183	n:340000
Cons ci ratio: 9.946976e-02	ci left: 4.320808e-03	ci right 4.775936e-03	k: 1545	n:340000
KS ci ratio: 6.686864e-03	ci left: 5.009914e-01	ci right 5.043556e-01	k: 170909	n:340000
CACNG5   340000 perm   101 sec   (3378 perm/sec)   p_kst 5.026735e-01   p_cons 4.544118e-03   p_joint 3.289118e-02

Outputting figure to mutsig2_images.part000000000028/CACNG5.6_1164_340000_0.50267_0.0045441_0.032891.png
                gene_name: CACNG5
               theta_stop: 0.099 
                    nperm: 340000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.0045 
      ci_cons_bounds_left: 0.0043 
     ci_cons_bounds_right: 0.0048 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.033 

Current progress: 43 percent done.
C9orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
Cons ci ratio: 1.808679e-02	ci left: 8.169002e-01	ci right 8.319103e-01	k: 8245	n:10000
KS ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
C9orf3   10000 perm   2 sec   (5897 perm/sec)   p_kst 4.037000e-01   p_cons 8.245000e-01   p_joint 5.986000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf3.5_2215_10000_0.4037_0.8245_0.5986.png
                gene_name: C9orf3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 45 percent done.
CA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
CA4   10000 perm   2 sec   (6430 perm/sec)   p_kst 2.129000e-01   p_cons 9.390000e-01   p_joint 3.455000e-01

Outputting figure to mutsig2_images.part000000000028/CA4.5_971_10000_0.2129_0.939_0.3455.png
                gene_name: CA4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 47 percent done.
CABIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
CABIN1   10000 perm   2 sec   (4774 perm/sec)   p_kst 9.880000e-02   p_cons 1.260000e-01   p_joint 1.653000e-01

Joint ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
Cons ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
KS ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
CABIN1   20000 perm   5 sec   (4383 perm/sec)   p_kst 1.013000e-01   p_cons 1.278000e-01   p_joint 7.695000e-02

Outputting figure to mutsig2_images.part000000000028/CABIN1.5_6807_20000_0.1013_0.1278_0.07695.png
                gene_name: CABIN1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.081 

Current progress: 49 percent done.
C9orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
C9orf41   10000 perm   2 sec   (6382 perm/sec)   p_kst 4.597000e-01   p_cons 2.270000e-01   p_joint 4.057000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf41.4_1262_10000_0.4597_0.227_0.4057.png
                gene_name: C9orf41
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 51 percent done.
C9orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
Cons ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
KS ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
C9orf68   10000 perm   1 sec   (7069 perm/sec)   p_kst 1.889000e-01   p_cons 9.485000e-01   p_joint 4.341000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf68.4_1041_10000_0.1889_0.9485_0.4341.png
                gene_name: C9orf68
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 53 percent done.
CA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
Cons ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
KS ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
CA3   10000 perm   1 sec   (7236 perm/sec)   p_kst 4.254000e-01   p_cons 1.281000e-01   p_joint 2.317000e-01

Joint ci ratio: 4.642457e-02	ci left: 2.566601e-01	ci right 2.689089e-01	k: 5255	n:20000
Cons ci ratio: 6.920250e-02	ci left: 1.334449e-01	ci right 1.430605e-01	k: 2764	n:20000
KS ci ratio: 3.249680e-02	ci left: 4.142442e-01	ci right 4.279788e-01	k: 8422	n:20000
CA3   20000 perm   3 sec   (6411 perm/sec)   p_kst 4.211000e-01   p_cons 1.382000e-01   p_joint 2.627500e-01

Outputting figure to mutsig2_images.part000000000028/CA3.4_811_20000_0.4211_0.1382_0.26275.png
                gene_name: CA3
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 55 percent done.
CA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
CA5A   10000 perm   1 sec   (7218 perm/sec)   p_kst 4.030000e-01   p_cons 8.367000e-01   p_joint 5.159000e-01

Outputting figure to mutsig2_images.part000000000028/CA5A.4_946_10000_0.403_0.8367_0.5159.png
                gene_name: CA5A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
C9orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
Cons ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
KS ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
C9orf64   10000 perm   1 sec   (6925 perm/sec)   p_kst 1.558000e-01   p_cons 2.969000e-01   p_joint 1.239000e-01

Joint ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
Cons ci ratio: 4.227525e-02	ci left: 2.942497e-01	ci right 3.070083e-01	k: 6012	n:20000
KS ci ratio: 6.364054e-02	ci left: 1.543517e-01	ci right 1.645475e-01	k: 3188	n:20000
C9orf64   20000 perm   3 sec   (6113 perm/sec)   p_kst 1.594000e-01   p_cons 3.006000e-01   p_joint 1.628500e-01

Outputting figure to mutsig2_images.part000000000028/C9orf64.3_1042_20000_0.1594_0.3006_0.16285.png
                gene_name: C9orf64
               theta_stop: 0.064 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 60 percent done.
C9orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
Cons ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
C9orf82   10000 perm   1 sec   (7077 perm/sec)   p_kst 8.410000e-02   p_cons 2.488000e-01   p_joint 1.243000e-01

Joint ci ratio: 8.939873e-02	ci left: 8.376601e-02	ci right 9.165433e-02	k: 1753	n:20000
Cons ci ratio: 4.638866e-02	ci left: 2.569578e-01	ci right 2.692111e-01	k: 5261	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
C9orf82   20000 perm   3 sec   (6317 perm/sec)   p_kst 8.255000e-02   p_cons 2.630500e-01   p_joint 8.765000e-02

Outputting figure to mutsig2_images.part000000000028/C9orf82.3_1110_20000_0.08255_0.26305_0.08765.png
                gene_name: C9orf82
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 62 percent done.
C9orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.128739e-02	ci left: 9.181162e-01	ci right 9.286356e-01	k: 9235	n:10000
KS ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
C9orf84   10000 perm   2 sec   (5548 perm/sec)   p_kst 8.900000e-01   p_cons 9.235000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf84.3_4572_10000_0.89_0.9235_1.png
                gene_name: C9orf84
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
Cons ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
CA9   10000 perm   1 sec   (6964 perm/sec)   p_kst 1.939000e-01   p_cons 3.367000e-01   p_joint 3.251000e-01

Outputting figure to mutsig2_images.part000000000028/CA9.3_1424_10000_0.1939_0.3367_0.3251.png
                gene_name: CA9
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 66 percent done.
CABC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
Cons ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
KS ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
CABC1   10000 perm   1 sec   (6712 perm/sec)   p_kst 2.028000e-01   p_cons 6.514000e-01   p_joint 2.255000e-01

Outputting figure to mutsig2_images.part000000000028/CABC1.3_2000_10000_0.2028_0.6514_0.2255.png
                gene_name: CABC1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 68 percent done.
C9orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
C9orf30   10000 perm   1 sec   (7824 perm/sec)   p_kst 2.605000e-01   p_cons 4.111000e-01   p_joint 8.481000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf30.2_836_10000_0.2605_0.4111_0.8481.png
                gene_name: C9orf30
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 70 percent done.
C9orf5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.983253e-02	ci left: 6.236666e-01	ci right 6.426558e-01	k: 6332	n:10000
KS ci ratio: 2.376668e-02	ci left: 7.223943e-01	ci right 7.398709e-01	k: 7312	n:10000
C9orf5   10000 perm   2 sec   (6525 perm/sec)   p_kst 7.312000e-01   p_cons 6.332000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf5.2_2712_10000_0.7312_0.6332_1.png
                gene_name: C9orf5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
C9orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
C9orf71   10000 perm   1 sec   (8165 perm/sec)   p_kst 3.419000e-01   p_cons 3.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf71.2_521_10000_0.3419_0.3836_1.png
                gene_name: C9orf71
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
C9orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
C9orf96   10000 perm   1 sec   (6833 perm/sec)   p_kst 7.681000e-01   p_cons 1.279000e-01   p_joint 4.195000e-01

Joint ci ratio: 5.029760e-02	ci left: 2.270562e-01	ci right 2.388215e-01	k: 4658	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 1.550813e-02	ci left: 7.556318e-01	ci right 7.674920e-01	k: 15232	n:20000
C9orf96   20000 perm   3 sec   (6064 perm/sec)   p_kst 7.616000e-01   p_cons 1.146000e-01   p_joint 2.329000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf96.2_2115_20000_0.7616_0.1146_0.2329.png
                gene_name: C9orf96
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
C9orf98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
KS ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
C9orf98   10000 perm   1 sec   (7433 perm/sec)   p_kst 5.651000e-01   p_cons 6.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf98.2_1492_10000_0.5651_0.694_1.png
                gene_name: C9orf98
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
Cons ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
KS ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
CA1   10000 perm   1 sec   (7539 perm/sec)   p_kst 2.770000e-01   p_cons 8.539000e-01   p_joint 5.882000e-01

Outputting figure to mutsig2_images.part000000000028/CA1.2_814_10000_0.277_0.8539_0.5882.png
                gene_name: CA1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 81 percent done.
CA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
Cons ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
KS ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
CA14   10000 perm   1 sec   (7505 perm/sec)   p_kst 4.490000e-01   p_cons 2.084000e-01   p_joint 4.349000e-01

Outputting figure to mutsig2_images.part000000000028/CA14.2_1058_10000_0.449_0.2084_0.4349.png
                gene_name: CA14
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
CA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
CA2   10000 perm   1 sec   (7933 perm/sec)   p_kst 1.292000e-01   p_cons 2.759000e-01   p_joint 5.127000e-01

Joint ci ratio: 2.125725e-02	ci left: 6.229140e-01	ci right 6.363483e-01	k: 12593	n:20000
Cons ci ratio: 4.293792e-02	ci left: 2.877906e-01	ci right 3.004693e-01	k: 5882	n:20000
KS ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
CA2   20000 perm   3 sec   (6921 perm/sec)   p_kst 1.294000e-01   p_cons 2.941000e-01   p_joint 6.296500e-01

Outputting figure to mutsig2_images.part000000000028/CA2.2_811_20000_0.1294_0.2941_0.62965.png
                gene_name: CA2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 85 percent done.
CA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
KS ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
CA8   10000 perm   1 sec   (7884 perm/sec)   p_kst 6.194000e-01   p_cons 5.040000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CA8.2_905_10000_0.6194_0.504_1.png
                gene_name: CA8
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CAB39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
KS ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
CAB39   10000 perm   1 sec   (7140 perm/sec)   p_kst 5.494000e-01   p_cons 3.480000e-02   p_joint 1.293000e-01

Joint ci ratio: 1.176346e-01	ci left: 4.949781e-02	ci right 5.573307e-02	k: 1051	n:20000
Cons ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
KS ci ratio: 2.498480e-02	ci left: 5.447755e-01	ci right 5.586094e-01	k: 11034	n:20000
CAB39   20000 perm   3 sec   (6337 perm/sec)   p_kst 5.517000e-01   p_cons 3.525000e-02   p_joint 5.255000e-02

Joint ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
Cons ci ratio: 1.190713e-01	ci left: 3.278697e-02	ci right 3.697040e-02	k: 1045	n:30000
KS ci ratio: 2.027292e-02	ci left: 5.491544e-01	ci right 5.604350e-01	k: 16644	n:30000
CAB39   30000 perm   5 sec   (6052 perm/sec)   p_kst 5.548000e-01   p_cons 3.483333e-02   p_joint 5.206667e-02

Joint ci ratio: 8.407059e-02	ci left: 4.937871e-02	ci right 5.373668e-02	k: 2061	n:40000
Cons ci ratio: 1.043530e-01	ci left: 3.229412e-02	ci right 3.587394e-02	k: 1362	n:40000
KS ci ratio: 1.762379e-02	ci left: 5.480364e-01	ci right 5.578059e-01	k: 22117	n:40000
CAB39   40000 perm   7 sec   (5864 perm/sec)   p_kst 5.529250e-01   p_cons 3.405000e-02   p_joint 5.152500e-02

Joint ci ratio: 7.897482e-02	ci left: 4.510241e-02	ci right 4.883041e-02	k: 2347	n:50000
Cons ci ratio: 9.445409e-02	ci left: 3.172495e-02	ci right 3.488953e-02	k: 1664	n:50000
KS ci ratio: 1.579153e-02	ci left: 5.476683e-01	ci right 5.564057e-01	k: 27602	n:50000
CAB39   50000 perm   9 sec   (5704 perm/sec)   p_kst 5.520400e-01   p_cons 3.328000e-02   p_joint 4.694000e-02

Outputting figure to mutsig2_images.part000000000028/CAB39.2_1058_50000_0.55204_0.03328_0.04694.png
                gene_name: CAB39
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 89 percent done.
CAB39L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
Cons ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
KS ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
CAB39L   10000 perm   1 sec   (7321 perm/sec)   p_kst 8.680000e-01   p_cons 1.094000e-01   p_joint 9.524000e-01

Joint ci ratio: 6.099694e-03	ci left: 9.508506e-01	ci right 9.567166e-01	k: 19077	n:20000
Cons ci ratio: 7.945270e-02	ci left: 1.041727e-01	ci right 1.128415e-01	k: 2169	n:20000
KS ci ratio: 1.088792e-02	ci left: 8.615558e-01	ci right 8.710374e-01	k: 17327	n:20000
CAB39L   20000 perm   3 sec   (6459 perm/sec)   p_kst 8.663500e-01   p_cons 1.084500e-01   p_joint 9.538500e-01

Outputting figure to mutsig2_images.part000000000028/CAB39L.2_1046_20000_0.86635_0.10845_0.95385.png
                gene_name: CAB39L
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 91 percent done.
CABLES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
CABLES1   10000 perm   1 sec   (6985 perm/sec)   p_kst 2.678000e-01   p_cons 3.378000e-01   p_joint 3.175000e-01

Outputting figure to mutsig2_images.part000000000028/CABLES1.2_1996_10000_0.2678_0.3378_0.3175.png
                gene_name: CABLES1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 94 percent done.
CABLES2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
Cons ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
KS ci ratio: 2.124885e-02	ci left: 7.645598e-01	ci right 7.810810e-01	k: 7729	n:10000
CABLES2   10000 perm   1 sec   (7137 perm/sec)   p_kst 7.729000e-01   p_cons 2.860000e-02   p_joint 3.195000e-01

Joint ci ratio: 4.397906e-02	ci left: 2.780055e-01	ci right 2.905573e-01	k: 5685	n:20000
Cons ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
KS ci ratio: 1.503586e-02	ci left: 7.667770e-01	ci right 7.784437e-01	k: 15453	n:20000
CABLES2   20000 perm   3 sec   (6359 perm/sec)   p_kst 7.726500e-01   p_cons 2.405000e-02   p_joint 2.842500e-01

Joint ci ratio: 2.803109e-02	ci left: 3.890630e-01	ci right 4.001574e-01	k: 11838	n:30000
Cons ci ratio: 1.407590e-01	ci left: 2.342368e-02	ci right 2.700240e-02	k: 755	n:30000
KS ci ratio: 1.217127e-02	ci left: 7.709031e-01	ci right 7.803768e-01	k: 23270	n:30000
CABLES2   30000 perm   5 sec   (6045 perm/sec)   p_kst 7.756667e-01   p_cons 2.516667e-02   p_joint 3.946000e-01

Joint ci ratio: 3.234291e-02	ci left: 2.642360e-01	ci right 2.729477e-01	k: 10743	n:40000
Cons ci ratio: 1.219634e-01	ci left: 2.363758e-02	ci right 2.673187e-02	k: 1006	n:40000
KS ci ratio: 1.055627e-02	ci left: 7.710263e-01	ci right 7.792337e-01	k: 31006	n:40000
CABLES2   40000 perm   7 sec   (5826 perm/sec)   p_kst 7.751500e-01   p_cons 2.515000e-02   p_joint 2.685750e-01

Joint ci ratio: 3.518677e-02	ci left: 1.953491e-01	ci right 2.023659e-01	k: 9942	n:50000
Cons ci ratio: 1.097943e-01	ci left: 2.349344e-02	ci right 2.624210e-02	k: 1242	n:50000
KS ci ratio: 9.474036e-03	ci left: 7.702680e-01	ci right 7.776202e-01	k: 38698	n:50000
CABLES2   50000 perm   9 sec   (5656 perm/sec)   p_kst 7.739600e-01   p_cons 2.484000e-02   p_joint 1.988400e-01

Joint ci ratio: 2.961028e-02	ci left: 2.227082e-01	ci right 2.294184e-01	k: 13563	n:60000
Cons ci ratio: 9.970165e-02	ci left: 2.386301e-02	ci right 2.638321e-02	k: 1506	n:60000
KS ci ratio: 8.678060e-03	ci left: 7.693922e-01	ci right 7.761147e-01	k: 46366	n:60000
CABLES2   60000 perm   11 sec   (5516 perm/sec)   p_kst 7.727667e-01   p_cons 2.510000e-02   p_joint 2.260500e-01

Outputting figure to mutsig2_images.part000000000028/CABLES2.2_1477_60000_0.77277_0.0251_0.22605.png
                gene_name: CABLES2
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 96 percent done.
CABYR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
Cons ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
KS ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
CABYR   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.100000e-01   p_cons 7.359000e-01   p_joint 8.712000e-01

Outputting figure to mutsig2_images.part000000000028/CABYR.2_2101_10000_0.51_0.7359_0.8712.png
                gene_name: CABYR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
CACNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
Cons ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
KS ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
CACNG4   10000 perm   1 sec   (7473 perm/sec)   p_kst 5.884000e-01   p_cons 9.153000e-01   p_joint 6.029000e-01

Outputting figure to mutsig2_images.part000000000028/CACNG4.2_1000_10000_0.5884_0.9153_0.6029.png
                gene_name: CACNG4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000028
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 28 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4421794: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000029> was used as the working directory.
Started at Wed Oct 24 17:34:17 2012
Results reported at Wed Oct 24 17:44:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000029.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000029.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 29  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000029.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    602.03 sec.
    Max Memory :      5261 MB
    Max Swap   :      7662 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
29
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 29
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 29: processing genes 2534 - 2624
Calculating significance of each gene.
Using projection method.
2534	CACNG6	1.000030e-01
2535	CACNG7	6.260005e-01
2536	CACNG8	1
2537	CACYBP	6.514358e-01
2538	CAD	9.995704e-01
2539	CADM1	1
2540	CADM2	4.253682e-01
2541	CADM3	1
2542	CADM4	1
2543	CADPS	5.747585e-01
2544	CADPS2	9.980168e-01
2545	CAGE1	1.738155e-01
2546	CALB1	7.115618e-02
2547	CALB2	1.577641e-02
2548	CALCA	3.379816e-01
2549	CALCB	5.425539e-01
2550	CALCOCO1	9.648895e-01
2551	CALCOCO2	7.895813e-01
2552	CALCR	3.999407e-02
2553	CALCRL	2.221017e-02
2554	CALD1	3.025636e-02
2555	CALHM1	1
2556	CALHM2	1
2557	CALM1	9.383669e-02
2558	CALM2	1
2559	CALM3	1
2560	CALML3	6.600825e-02
2561	CALML4	1
2562	CALML5	1
2563	CALML6	1
2564	CALN1	5.841866e-02
2565	CALR	8.377718e-01
2566	CALR3	3.111640e-01
2567	CALU	3.531590e-01
2568	CALY	2.558875e-02
2569	CAMK1	4.214338e-01
2570	CAMK1D	3.552578e-01
2571	CAMK1G	1
2572	CAMK2A	9.246188e-01
2573	CAMK2B	6.630100e-01
2574	CAMK2D	6.678093e-01
2575	CAMK2G	9.795391e-01
2576	CAMK2N1	2.961504e-01
2577	CAMK2N2	1
2578	CAMK4	1.303804e-02
2579	CAMKK1	7.323490e-01
2580	CAMKK2	9.158794e-01
2581	CAMKV	6.155525e-01
2582	CAMLG	1
2583	CAMP	2.123821e-01
2584	CAMSAP1	8.509897e-01
2585	CAMSAP1L1	9.911020e-01
2586	CAMTA1	9.998953e-01
2587	CAMTA2	9.901456e-01
2588	CAND1	9.966382e-01
2589	CAND2	9.081017e-01
2590	CANT1	8.428554e-01
2591	CANX	8.713679e-01
2592	CAP1	1
2593	CAP2	7.017073e-01
2594	CAPG	7.119779e-01
2595	CAPN1	1
2596	CAPN10	1
2597	CAPN11	4.034518e-02
2598	CAPN12	1
2599	CAPN13	9.681358e-01
2600	CAPN2	7.956397e-01
2601	CAPN3	9.948874e-01
2602	CAPN5	6.463671e-01
2603	CAPN6	9.124969e-01
2604	CAPN7	5.139088e-01
2605	CAPN9	9.785668e-01
2606	CAPNS1	1
2607	CAPNS2	3.020728e-01
2608	CAPRIN1	5.094676e-01
2609	CAPRIN2	2.145547e-01
2610	CAPS	5.541263e-01
2611	CAPS2	7.672506e-02
2612	CAPSL	1.049089e-01
2613	CAPZA1	8.510667e-01
2614	CAPZA2	5.347355e-01
2615	CAPZA3	4.974215e-01
2616	CAPZB	8.558649e-01
2617	CARD10	9.875309e-01
2618	CARD11	9.980938e-01
2619	CARD14	7.713984e-01
2620	CARD16	3.775966e-02
2621	CARD17	5.046247e-01
2622	CARD18	1
2623	CARD6	4.936697e-01
2624	CARD8	3.868290e-01
Done

Running MutSig 2:
Scatter job 29: processing genes 2534 - 2624
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CADPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
Cons ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
CADPS   10000 perm   2 sec   (4624 perm/sec)   p_kst 2.650000e-01   p_cons 6.649000e-01   p_joint 3.864000e-01

Outputting figure to mutsig2_images.part000000000029/CADPS.17_4255_10000_0.265_0.6649_0.3864.png
                gene_name: CADPS
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
CARD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
Cons ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
KS ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
CARD11   10000 perm   2 sec   (4977 perm/sec)   p_kst 8.440000e-01   p_cons 3.479000e-01   p_joint 7.141000e-01

Outputting figure to mutsig2_images.part000000000029/CARD11.17_3561_10000_0.844_0.3479_0.7141.png
                gene_name: CARD11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 3 percent done.
CAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
Cons ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
KS ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
CAD   10000 perm   3 sec   (3984 perm/sec)   p_kst 7.789000e-01   p_cons 2.927000e-01   p_joint 7.204000e-01

Outputting figure to mutsig2_images.part000000000029/CAD.16_6854_10000_0.7789_0.2927_0.7204.png
                gene_name: CAD
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 5 percent done.
CARD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
Cons ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
KS ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
CARD6   10000 perm   2 sec   (5290 perm/sec)   p_kst 5.900000e-03   p_cons 9.001000e-01   p_joint 3.440000e-02

Joint ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
Cons ci ratio: 9.137912e-03	ci left: 8.977959e-01	ci right 9.060868e-01	k: 18040	n:20000
KS ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
CARD6   20000 perm   4 sec   (4801 perm/sec)   p_kst 6.150000e-03   p_cons 9.020000e-01   p_joint 2.075000e-02

Joint ci ratio: 1.242077e-01	ci left: 3.013415e-02	ci right 3.415712e-02	k: 963	n:30000
Cons ci ratio: 7.061688e-03	ci left: 9.080262e-01	ci right 9.144939e-01	k: 27339	n:30000
KS ci ratio: 2.769537e-01	ci left: 5.715107e-03	ci right 7.582366e-03	k: 198	n:30000
CARD6   30000 perm   7 sec   (4612 perm/sec)   p_kst 6.600000e-03   p_cons 9.113000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.148481e-01	ci left: 2.667242e-02	ci right 2.994654e-02	k: 1131	n:40000
Cons ci ratio: 6.105959e-03	ci left: 9.087249e-01	ci right 9.143152e-01	k: 36462	n:40000
KS ci ratio: 2.476424e-01	ci left: 5.454280e-03	ci right 7.018704e-03	k: 248	n:40000
CARD6   40000 perm   9 sec   (4495 perm/sec)   p_kst 6.200000e-03   p_cons 9.115500e-01   p_joint 2.827500e-02

Joint ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
Cons ci ratio: 5.471727e-03	ci left: 9.087133e-01	ci right 9.137189e-01	k: 45562	n:50000
KS ci ratio: 2.201680e-01	ci left: 5.606360e-03	ci right 7.011884e-03	k: 314	n:50000
CARD6   50000 perm   11 sec   (4408 perm/sec)   p_kst 6.280000e-03   p_cons 9.112400e-01   p_joint 2.122000e-02

Joint ci ratio: 1.083914e-01	ci left: 2.017581e-02	ci right 2.250415e-02	k: 1279	n:60000
Cons ci ratio: 4.986890e-03	ci left: 9.091991e-01	ci right 9.137610e-01	k: 54690	n:60000
KS ci ratio: 2.012533e-01	ci left: 5.650879e-03	ci right 6.930915e-03	k: 376	n:60000
CARD6   60000 perm   14 sec   (4302 perm/sec)   p_kst 6.266667e-03   p_cons 9.115000e-01   p_joint 2.131667e-02

Joint ci ratio: 1.058143e-01	ci left: 1.821016e-02	ci right 2.025854e-02	k: 1345	n:70000
Cons ci ratio: 4.614471e-03	ci left: 9.094584e-01	ci right 9.136789e-01	k: 63811	n:70000
KS ci ratio: 1.869315e-01	ci left: 5.659149e-03	ci right 6.839485e-03	k: 436	n:70000
CARD6   70000 perm   17 sec   (4215 perm/sec)   p_kst 6.228571e-03   p_cons 9.115857e-01   p_joint 1.921429e-02

Joint ci ratio: 1.016146e-01	ci left: 1.733371e-02	ci right 1.920146e-02	k: 1460	n:80000
Cons ci ratio: 4.319378e-03	ci left: 9.094854e-01	ci right 9.134347e-01	k: 72918	n:80000
KS ci ratio: 1.832480e-01	ci left: 5.166207e-03	ci right 6.220127e-03	k: 454	n:80000
CARD6   80000 perm   19 sec   (4139 perm/sec)   p_kst 5.675000e-03   p_cons 9.114750e-01   p_joint 1.825000e-02

Joint ci ratio: 1.040990e-01	ci left: 1.470304e-02	ci right 1.632841e-02	k: 1395	n:90000
Cons ci ratio: 4.082623e-03	ci left: 9.091882e-01	ci right 9.129186e-01	k: 81996	n:90000
KS ci ratio: 1.714051e-01	ci left: 5.282405e-03	ci right 6.283187e-03	k: 519	n:90000
CARD6   90000 perm   22 sec   (4067 perm/sec)   p_kst 5.766667e-03   p_cons 9.110667e-01   p_joint 1.550000e-02

Joint ci ratio: 1.010689e-01	ci left: 1.407044e-02	ci right 1.557790e-02	k: 1481	n:100000
Cons ci ratio: 3.874455e-03	ci left: 9.092283e-01	ci right 9.127678e-01	k: 91101	n:100000
KS ci ratio: 1.624365e-01	ci left: 5.319538e-03	ci right 6.269472e-03	k: 578	n:100000
CARD6   100000 perm   25 sec   (4002 perm/sec)   p_kst 5.780000e-03   p_cons 9.110100e-01   p_joint 1.481000e-02

Joint ci ratio: 1.022273e-01	ci left: 1.251613e-02	ci right 1.387335e-02	k: 1450	n:110000
Cons ci ratio: 3.699745e-03	ci left: 9.090635e-01	ci right 9.124420e-01	k: 100184	n:110000
KS ci ratio: 1.559772e-01	ci left: 5.263642e-03	ci right 6.162720e-03	k: 627	n:110000
CARD6   110000 perm   28 sec   (3942 perm/sec)   p_kst 5.700000e-03   p_cons 9.107636e-01   p_joint 1.318182e-02

Joint ci ratio: 9.011150e-02	ci left: 1.482493e-02	ci right 1.623196e-02	k: 1862	n:120000
Cons ci ratio: 3.543432e-03	ci left: 9.090808e-01	ci right 9.123160e-01	k: 109285	n:120000
KS ci ratio: 1.422133e-01	ci left: 5.844053e-03	ci right 6.746723e-03	k: 754	n:120000
CARD6   120000 perm   31 sec   (3883 perm/sec)   p_kst 6.283333e-03   p_cons 9.107083e-01   p_joint 1.551667e-02

Joint ci ratio: 8.840153e-02	ci left: 1.424088e-02	ci right 1.556550e-02	k: 1936	n:130000
Cons ci ratio: 3.410540e-03	ci left: 9.088499e-01	ci right 9.119625e-01	k: 118354	n:130000
KS ci ratio: 1.363757e-01	ci left: 5.884522e-03	ci right 6.753105e-03	k: 820	n:130000
CARD6   130000 perm   34 sec   (3826 perm/sec)   p_kst 6.307692e-03   p_cons 9.104154e-01   p_joint 1.489231e-02

Joint ci ratio: 8.785331e-02	ci left: 1.340504e-02	ci right 1.464378e-02	k: 1962	n:140000
Cons ci ratio: 3.290809e-03	ci left: 9.086903e-01	ci right 9.116926e-01	k: 127428	n:140000
KS ci ratio: 1.334154e-01	ci left: 5.719533e-03	ci right 6.543980e-03	k: 857	n:140000
CARD6   140000 perm   37 sec   (3771 perm/sec)   p_kst 6.121429e-03   p_cons 9.102000e-01   p_joint 1.401429e-02

Joint ci ratio: 7.075335e-02	ci left: 1.934333e-02	ci right 2.076864e-02	k: 3007	n:150000
Cons ci ratio: 3.177273e-03	ci left: 9.088426e-01	ci right 9.117415e-01	k: 136545	n:150000
KS ci ratio: 1.296232e-01	ci left: 5.667034e-03	ci right 6.458908e-03	k: 908	n:150000
CARD6   150000 perm   40 sec   (3718 perm/sec)   p_kst 6.053333e-03   p_cons 9.103000e-01   p_joint 2.004667e-02

Joint ci ratio: 7.059555e-02	ci left: 1.823837e-02	ci right 1.957914e-02	k: 3024	n:160000
Cons ci ratio: 3.072019e-03	ci left: 9.091221e-01	ci right 9.119255e-01	k: 145685	n:160000
KS ci ratio: 1.255462e-01	ci left: 5.675879e-03	ci right 6.442186e-03	k: 968	n:160000
CARD6   160000 perm   44 sec   (3670 perm/sec)   p_kst 6.050000e-03   p_cons 9.105313e-01   p_joint 1.890000e-02

Joint ci ratio: 7.539395e-02	ci left: 1.506244e-02	ci right 1.624828e-02	k: 2660	n:170000
Cons ci ratio: 2.986885e-03	ci left: 9.088014e-01	ci right 9.115258e-01	k: 154729	n:170000
KS ci ratio: 1.219506e-01	ci left: 5.672619e-03	ci right 6.414967e-03	k: 1026	n:170000
CARD6   170000 perm   47 sec   (3624 perm/sec)   p_kst 6.035294e-03   p_cons 9.101706e-01   p_joint 1.564706e-02

Joint ci ratio: 7.488637e-02	ci left: 1.443260e-02	ci right 1.556087e-02	k: 2698	n:180000
Cons ci ratio: 2.908906e-03	ci left: 9.084896e-01	ci right 9.111416e-01	k: 163768	n:180000
KS ci ratio: 1.189785e-01	ci left: 5.637651e-03	ci right 6.356177e-03	k: 1078	n:180000
CARD6   180000 perm   50 sec   (3572 perm/sec)   p_kst 5.988889e-03   p_cons 9.098222e-01   p_joint 1.498889e-02

Joint ci ratio: 7.284940e-02	ci left: 1.446339e-02	ci right 1.556201e-02	k: 2851	n:190000
Cons ci ratio: 2.830340e-03	ci left: 9.085825e-01	ci right 9.111629e-01	k: 172877	n:190000
KS ci ratio: 1.158024e-01	ci left: 5.647451e-03	ci right 6.346698e-03	k: 1138	n:190000
CARD6   190000 perm   54 sec   (3526 perm/sec)   p_kst 5.989474e-03   p_cons 9.098789e-01   p_joint 1.500526e-02

Joint ci ratio: 7.487310e-02	ci left: 1.301352e-02	ci right 1.403065e-02	k: 2703	n:200000
Cons ci ratio: 2.754952e-03	ci left: 9.088380e-01	ci right 9.113501e-01	k: 182020	n:200000
KS ci ratio: 1.125847e-01	ci left: 5.685660e-03	ci right 6.368777e-03	k: 1204	n:200000
CARD6   200000 perm   57 sec   (3482 perm/sec)   p_kst 6.020000e-03   p_cons 9.101000e-01   p_joint 1.351500e-02

Joint ci ratio: 6.759602e-02	ci left: 1.522882e-02	ci right 1.629889e-02	k: 3309	n:210000
Cons ci ratio: 2.685190e-03	ci left: 9.090746e-01	ci right 9.115236e-01	k: 191164	n:210000
KS ci ratio: 1.106773e-01	ci left: 5.609317e-03	ci right 6.271099e-03	k: 1246	n:210000
CARD6   210000 perm   61 sec   (3442 perm/sec)   p_kst 5.933333e-03   p_cons 9.103048e-01   p_joint 1.575714e-02

Joint ci ratio: 7.033429e-02	ci left: 1.343279e-02	ci right 1.441645e-02	k: 3062	n:220000
Cons ci ratio: 2.623966e-03	ci left: 9.090708e-01	ci right 9.114638e-01	k: 200260	n:220000
KS ci ratio: 1.083993e-01	ci left: 5.588653e-03	ci right 6.233560e-03	k: 1299	n:220000
CARD6   220000 perm   65 sec   (3401 perm/sec)   p_kst 5.904545e-03   p_cons 9.102727e-01   p_joint 1.391818e-02

Joint ci ratio: 6.310539e-02	ci left: 1.597903e-02	ci right 1.702451e-02	k: 3794	n:230000
Cons ci ratio: 2.567088e-03	ci left: 9.090461e-01	ci right 9.113870e-01	k: 209351	n:230000
KS ci ratio: 1.058245e-01	ci left: 5.616479e-03	ci right 6.248243e-03	k: 1363	n:230000
CARD6   230000 perm   68 sec   (3360 perm/sec)   p_kst 5.926087e-03   p_cons 9.102217e-01   p_joint 1.649565e-02

Joint ci ratio: 6.520083e-02	ci left: 1.435348e-02	ci right 1.532495e-02	k: 3560	n:240000
Cons ci ratio: 2.517788e-03	ci left: 9.087600e-01	ci right 9.110551e-01	k: 218379	n:240000
KS ci ratio: 1.036442e-01	ci left: 5.617795e-03	ci right 6.235895e-03	k: 1421	n:240000
CARD6   240000 perm   72 sec   (3319 perm/sec)   p_kst 5.920833e-03   p_cons 9.099125e-01   p_joint 1.483333e-02

Joint ci ratio: 6.451649e-02	ci left: 1.408228e-02	ci right 1.502502e-02	k: 3637	n:250000
Cons ci ratio: 2.471677e-03	ci left: 9.084652e-01	ci right 9.107173e-01	k: 227399	n:250000
KS ci ratio: 1.013525e-01	ci left: 5.646423e-03	ci right 6.253117e-03	k: 1486	n:250000
CARD6   250000 perm   76 sec   (3279 perm/sec)   p_kst 5.944000e-03   p_cons 9.095960e-01   p_joint 1.454800e-02

Joint ci ratio: 6.328502e-02	ci left: 1.408187e-02	ci right 1.500592e-02	k: 3780	n:260000
Cons ci ratio: 2.421464e-03	ci left: 9.086382e-01	ci right 9.108449e-01	k: 236534	n:260000
KS ci ratio: 9.930291e-02	ci left: 5.661733e-03	ci right 6.257054e-03	k: 1548	n:260000
CARD6   260000 perm   80 sec   (3242 perm/sec)   p_kst 5.953846e-03   p_cons 9.097462e-01   p_joint 1.453846e-02

Outputting figure to mutsig2_images.part000000000029/CARD6.13_3126_260000_0.0059538_0.90975_0.014538.png
                gene_name: CARD6
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.0060 
        ci_ks_bounds_left: 0.0057 
       ci_ks_bounds_right: 0.0063 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 6 percent done.
CALCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
KS ci ratio: 6.053044e-03	ci left: 9.736569e-01	ci right 9.796610e-01	k: 9768	n:10000
CALCRL   10000 perm   2 sec   (6081 perm/sec)   p_kst 9.768000e-01   p_cons 9.268000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CALCRL.10_1434_10000_0.9768_0.9268_1.png
                gene_name: CALCRL
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
CAPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
CAPN5   10000 perm   2 sec   (5563 perm/sec)   p_kst 1.754000e-01   p_cons 2.696000e-01   p_joint 1.483000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN5.10_1971_10000_0.1754_0.2696_0.1483.png
                gene_name: CAPN5
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 9 percent done.
CAPN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
Cons ci ratio: 4.816114e-02	ci left: 3.887854e-01	ci right 4.080738e-01	k: 3984	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
CAPN6   10000 perm   2 sec   (5458 perm/sec)   p_kst 2.055000e-01   p_cons 3.984000e-01   p_joint 2.591000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN6.10_1974_10000_0.2055_0.3984_0.2591.png
                gene_name: CAPN6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
CALD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
Cons ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
KS ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
CALD1   10000 perm   2 sec   (5783 perm/sec)   p_kst 8.364000e-01   p_cons 1.510000e-02   p_joint 9.730000e-02

Joint ci ratio: 7.026779e-02	ci left: 1.298983e-01	ci right 1.394082e-01	k: 2692	n:20000
Cons ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
KS ci ratio: 1.214297e-02	ci left: 8.338322e-01	ci right 8.440691e-01	k: 16780	n:20000
CALD1   20000 perm   4 sec   (5182 perm/sec)   p_kst 8.390000e-01   p_cons 1.590000e-02   p_joint 1.346000e-01

Joint ci ratio: 7.959511e-02	ci left: 7.181505e-02	ci right 7.780094e-02	k: 2243	n:30000
Cons ci ratio: 1.971993e-01	ci left: 1.171716e-02	ci right 1.431175e-02	k: 389	n:30000
KS ci ratio: 1.000977e-02	ci left: 8.321649e-01	ci right 8.405698e-01	k: 25092	n:30000
CALD1   30000 perm   6 sec   (4982 perm/sec)   p_kst 8.364000e-01   p_cons 1.296667e-02   p_joint 7.476667e-02

Joint ci ratio: 7.520618e-02	ci left: 6.120314e-02	ci right 6.601045e-02	k: 2543	n:40000
Cons ci ratio: 1.719567e-01	ci left: 1.172137e-02	ci right 1.395018e-02	k: 512	n:40000
KS ci ratio: 8.618711e-03	ci left: 8.343270e-01	ci right 8.415738e-01	k: 33519	n:40000
CALD1   40000 perm   8 sec   (4845 perm/sec)   p_kst 8.379750e-01   p_cons 1.280000e-02   p_joint 6.357500e-02

Joint ci ratio: 6.462602e-02	ci left: 6.632068e-02	ci right 7.076957e-02	k: 3426	n:50000
Cons ci ratio: 1.519242e-01	ci left: 1.214096e-02	ci right 1.415615e-02	k: 656	n:50000
KS ci ratio: 7.726788e-03	ci left: 8.340756e-01	ci right 8.405652e-01	k: 41867	n:50000
CALD1   50000 perm   11 sec   (4744 perm/sec)   p_kst 8.373400e-01   p_cons 1.312000e-02   p_joint 6.852000e-02

Joint ci ratio: 5.233790e-02	ci left: 8.325786e-02	ci right 8.774899e-02	k: 5129	n:60000
Cons ci ratio: 1.356176e-01	ci left: 1.280124e-02	ci right 1.467957e-02	k: 823	n:60000
KS ci ratio: 7.047236e-03	ci left: 8.346075e-01	ci right 8.405265e-01	k: 50255	n:60000
CALD1   60000 perm   13 sec   (4651 perm/sec)   p_kst 8.375833e-01   p_cons 1.371667e-02   p_joint 8.548333e-02

Joint ci ratio: 4.954522e-02	ci left: 8.004835e-02	ci right 8.412923e-02	k: 5745	n:70000
Cons ci ratio: 1.263148e-01	ci left: 1.271353e-02	ci right 1.444143e-02	k: 949	n:70000
KS ci ratio: 6.535701e-03	ci left: 8.343577e-01	ci right 8.398429e-01	k: 58598	n:70000
CALD1   70000 perm   15 sec   (4561 perm/sec)   p_kst 8.371143e-01   p_cons 1.355714e-02   p_joint 8.207143e-02

Joint ci ratio: 4.718750e-02	ci left: 7.753555e-02	ci right 8.129502e-02	k: 6352	n:80000
Cons ci ratio: 1.181410e-01	ci left: 1.277242e-02	ci right 1.438814e-02	k: 1085	n:80000
KS ci ratio: 6.365767e-03	ci left: 8.231411e-01	ci right 8.284102e-01	k: 66063	n:80000
CALD1   80000 perm   18 sec   (4480 perm/sec)   p_kst 8.257875e-01   p_cons 1.356250e-02   p_joint 7.940000e-02

Joint ci ratio: 4.443524e-02	ci left: 7.781765e-02	ci right 8.136506e-02	k: 7162	n:90000
Cons ci ratio: 1.113729e-01	ci left: 1.282104e-02	ci right 1.434389e-02	k: 1221	n:90000
KS ci ratio: 6.002826e-03	ci left: 8.232390e-01	ci right 8.282067e-01	k: 74316	n:90000
CALD1   90000 perm   20 sec   (4404 perm/sec)   p_kst 8.257333e-01   p_cons 1.356667e-02   p_joint 7.957778e-02

Joint ci ratio: 3.556044e-02	ci left: 1.064200e-01	ci right 1.102828e-01	k: 10834	n:100000
Cons ci ratio: 9.834280e-02	ci left: 1.487028e-02	ci right 1.641799e-02	k: 1563	n:100000
KS ci ratio: 5.697414e-03	ci left: 8.232337e-01	ci right 8.279474e-01	k: 82560	n:100000
CALD1   100000 perm   23 sec   (4325 perm/sec)   p_kst 8.256000e-01   p_cons 1.563000e-02   p_joint 1.083400e-01

Outputting figure to mutsig2_images.part000000000029/CALD1.8_2491_100000_0.8256_0.01563_0.10834.png
                gene_name: CALD1
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 12 percent done.
CAMSAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
CAMSAP1L1   10000 perm   2 sec   (4753 perm/sec)   p_kst 6.389000e-01   p_cons 2.000000e-02   p_joint 4.680000e-02

Joint ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
Cons ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
KS ci ratio: 2.081960e-02	ci left: 6.326000e-01	ci right 6.459595e-01	k: 12786	n:20000
CAMSAP1L1   20000 perm   5 sec   (4328 perm/sec)   p_kst 6.393000e-01   p_cons 1.895000e-02   p_joint 7.630000e-02

Joint ci ratio: 7.619743e-02	ci left: 7.796940e-02	ci right 8.417868e-02	k: 2431	n:30000
Cons ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
KS ci ratio: 1.693187e-02	ci left: 6.356754e-01	ci right 6.465640e-01	k: 19234	n:30000
CAMSAP1L1   30000 perm   7 sec   (4135 perm/sec)   p_kst 6.411333e-01   p_cons 1.856667e-02   p_joint 8.103333e-02

Joint ci ratio: 6.377465e-02	ci left: 8.354111e-02	ci right 8.906912e-02	k: 3451	n:40000
Cons ci ratio: 1.416920e-01	ci left: 1.744327e-02	ci right 2.012724e-02	k: 750	n:40000
KS ci ratio: 1.472360e-02	ci left: 6.345215e-01	ci right 6.439583e-01	k: 25570	n:40000
CAMSAP1L1   40000 perm   10 sec   (4042 perm/sec)   p_kst 6.392500e-01   p_cons 1.875000e-02   p_joint 8.627500e-02

Joint ci ratio: 5.432928e-02	ci left: 9.173225e-02	ci right 9.687496e-02	k: 4714	n:50000
Cons ci ratio: 1.272699e-01	ci left: 1.743376e-02	ci right 1.982259e-02	k: 930	n:50000
KS ci ratio: 1.317582e-02	ci left: 6.347922e-01	ci right 6.432316e-01	k: 31951	n:50000
CAMSAP1L1   50000 perm   13 sec   (3969 perm/sec)   p_kst 6.390200e-01   p_cons 1.860000e-02   p_joint 9.428000e-02

Joint ci ratio: 5.196768e-02	ci left: 8.436129e-02	ci right 8.887879e-02	k: 5196	n:60000
Cons ci ratio: 1.163511e-01	ci left: 1.748536e-02	ci right 1.966156e-02	k: 1113	n:60000
KS ci ratio: 1.225967e-02	ci left: 6.262893e-01	ci right 6.340314e-01	k: 37810	n:60000
CAMSAP1L1   60000 perm   15 sec   (3900 perm/sec)   p_kst 6.301667e-01   p_cons 1.855000e-02   p_joint 8.660000e-02

Joint ci ratio: 4.368272e-02	ci left: 1.009132e-01	ci right 1.054340e-01	k: 7221	n:70000
Cons ci ratio: 1.074958e-01	ci left: 1.763979e-02	ci right 1.965753e-02	k: 1304	n:70000
KS ci ratio: 1.145545e-02	ci left: 6.222601e-01	ci right 6.294437e-01	k: 43810	n:70000
CAMSAP1L1   70000 perm   18 sec   (3844 perm/sec)   p_kst 6.258571e-01   p_cons 1.862857e-02   p_joint 1.031571e-01

Joint ci ratio: 4.235255e-02	ci left: 9.467277e-02	ci right 9.878153e-02	k: 7737	n:80000
Cons ci ratio: 1.006023e-01	ci left: 1.768720e-02	ci right 1.957294e-02	k: 1489	n:80000
KS ci ratio: 1.070520e-02	ci left: 6.229493e-01	ci right 6.296665e-01	k: 50105	n:80000
CAMSAP1L1   80000 perm   21 sec   (3787 perm/sec)   p_kst 6.263125e-01   p_cons 1.861250e-02   p_joint 9.671250e-02

Joint ci ratio: 4.328983e-02	ci left: 8.168956e-02	ci right 8.531511e-02	k: 7514	n:90000
Cons ci ratio: 9.508752e-02	ci left: 1.765134e-02	ci right 1.942433e-02	k: 1667	n:90000
KS ci ratio: 1.011026e-02	ci left: 6.223395e-01	ci right 6.286746e-01	k: 56296	n:90000
CAMSAP1L1   90000 perm   24 sec   (3737 perm/sec)   p_kst 6.255111e-01   p_cons 1.852222e-02   p_joint 8.348889e-02

Outputting figure to mutsig2_images.part000000000029/CAMSAP1L1.9_4505_90000_0.62551_0.018522_0.083489.png
                gene_name: CAMSAP1L1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.085 

Current progress: 14 percent done.
CAPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
CAPN11   10000 perm   2 sec   (6114 perm/sec)   p_kst 2.682000e-01   p_cons 5.030000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN11.9_2312_10000_0.2682_0.503_0.4451.png
                gene_name: CAPN11
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 16 percent done.
CAPRIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
Cons ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
KS ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
CAPRIN2   10000 perm   2 sec   (4947 perm/sec)   p_kst 6.431000e-01   p_cons 7.846000e-01   p_joint 8.303000e-01

Outputting figure to mutsig2_images.part000000000029/CAPRIN2.9_3456_10000_0.6431_0.7846_0.8303.png
                gene_name: CAPRIN2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 17 percent done.
CALCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
CALCR   10000 perm   2 sec   (5844 perm/sec)   p_kst 8.410000e-02   p_cons 3.123000e-01   p_joint 1.831000e-01

Joint ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
Cons ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
KS ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
CALCR   20000 perm   4 sec   (5277 perm/sec)   p_kst 8.130000e-02   p_cons 2.955500e-01   p_joint 1.219000e-01

Outputting figure to mutsig2_images.part000000000029/CALCR.8_1583_20000_0.0813_0.29555_0.1219.png
                gene_name: CALCR
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 19 percent done.
CAMK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
Cons ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
KS ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
CAMK4   10000 perm   2 sec   (6632 perm/sec)   p_kst 3.805000e-01   p_cons 1.376000e-01   p_joint 2.776000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK4.8_1466_10000_0.3805_0.1376_0.2776.png
                gene_name: CAMK4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 20 percent done.
CAMSAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
CAMSAP1   10000 perm   2 sec   (5326 perm/sec)   p_kst 4.670000e-02   p_cons 9.306000e-01   p_joint 1.185000e-01

Joint ci ratio: 7.864204e-02	ci left: 1.061377e-01	ci right 1.148759e-01	k: 2209	n:20000
Cons ci ratio: 7.325474e-03	ci left: 9.312386e-01	ci right 9.381343e-01	k: 18695	n:20000
KS ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
CAMSAP1   20000 perm   4 sec   (4797 perm/sec)   p_kst 4.850000e-02   p_cons 9.347500e-01   p_joint 1.104500e-01

Joint ci ratio: 7.024815e-02	ci left: 9.072047e-02	ci right 9.735839e-02	k: 2820	n:30000
Cons ci ratio: 6.183159e-03	ci left: 9.276317e-01	ci right 9.334179e-01	k: 27917	n:30000
KS ci ratio: 1.007531e-01	ci left: 4.560825e-02	ci right 5.047975e-02	k: 1440	n:30000
CAMSAP1   30000 perm   6 sec   (4632 perm/sec)   p_kst 4.800000e-02   p_cons 9.305667e-01   p_joint 9.400000e-02

Joint ci ratio: 6.306740e-02	ci left: 8.529052e-02	ci right 9.086945e-02	k: 3522	n:40000
Cons ci ratio: 5.392416e-03	ci left: 9.271000e-01	ci right 9.321374e-01	k: 37186	n:40000
KS ci ratio: 8.704904e-02	ci left: 4.614583e-02	ci right 5.037006e-02	k: 1929	n:40000
CAMSAP1   40000 perm   9 sec   (4510 perm/sec)   p_kst 4.822500e-02   p_cons 9.296500e-01   p_joint 8.805000e-02

Outputting figure to mutsig2_images.part000000000029/CAMSAP1.8_4877_40000_0.048225_0.92965_0.08805.png
                gene_name: CAMSAP1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 22 percent done.
CAMTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
CAMTA1   10000 perm   2 sec   (5290 perm/sec)   p_kst 3.640000e-01   p_cons 2.326000e-01   p_joint 3.698000e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA1.8_5114_10000_0.364_0.2326_0.3698.png
                gene_name: CAMTA1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 23 percent done.
CAPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KS ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
CAPN3   10000 perm   2 sec   (5845 perm/sec)   p_kst 9.590000e-01   p_cons 7.914000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAPN3.6_2614_10000_0.959_0.7914_1.png
                gene_name: CAPN3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
CAPN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
Cons ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
KS ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
CAPN9   10000 perm   2 sec   (6253 perm/sec)   p_kst 9.232000e-01   p_cons 1.657000e-01   p_joint 5.430000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN9.6_2153_10000_0.9232_0.1657_0.543.png
                gene_name: CAPN9
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 27 percent done.
CARD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
CARD14   10000 perm   2 sec   (5602 perm/sec)   p_kst 4.942000e-01   p_cons 8.860000e-02   p_joint 1.648000e-01

Joint ci ratio: 6.236552e-02	ci left: 1.597810e-01	ci right 1.701166e-01	k: 3298	n:20000
Cons ci ratio: 8.776318e-02	ci left: 8.670563e-02	ci right 9.471382e-02	k: 1813	n:20000
KS ci ratio: 2.806512e-02	ci left: 4.867974e-01	ci right 5.007045e-01	k: 9875	n:20000
CARD14   20000 perm   4 sec   (5058 perm/sec)   p_kst 4.937500e-01   p_cons 9.065000e-02   p_joint 1.649000e-01

Outputting figure to mutsig2_images.part000000000029/CARD14.6_3260_20000_0.49375_0.09065_0.1649.png
                gene_name: CARD14
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 28 percent done.
CADM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
Cons ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
KS ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
CADM2   10000 perm   2 sec   (6630 perm/sec)   p_kst 4.059000e-01   p_cons 3.756000e-01   p_joint 5.222000e-01

Outputting figure to mutsig2_images.part000000000029/CADM2.5_1419_10000_0.4059_0.3756_0.5222.png
                gene_name: CADM2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 30 percent done.
CADM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
Cons ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
CADM3   10000 perm   1 sec   (7090 perm/sec)   p_kst 1.394000e-01   p_cons 5.421000e-01   p_joint 3.103000e-01

Outputting figure to mutsig2_images.part000000000029/CADM3.5_1339_10000_0.1394_0.5421_0.3103.png
                gene_name: CADM3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 31 percent done.
CADPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
KS ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
CADPS2   10000 perm   2 sec   (5610 perm/sec)   p_kst 8.136000e-01   p_cons 2.382000e-01   p_joint 4.120000e-01

Outputting figure to mutsig2_images.part000000000029/CADPS2.5_4055_10000_0.8136_0.2382_0.412.png
                gene_name: CADPS2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 33 percent done.
CAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
Cons ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
KS ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
CAGE1   10000 perm   2 sec   (6152 perm/sec)   p_kst 6.368000e-01   p_cons 2.593000e-01   p_joint 4.061000e-01

Outputting figure to mutsig2_images.part000000000029/CAGE1.5_2678_10000_0.6368_0.2593_0.4061.png
                gene_name: CAGE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 34 percent done.
CALB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.974270e-02	ci left: 6.250738e-01	ci right 6.440477e-01	k: 6346	n:10000
Cons ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
KS ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
CALB2   10000 perm   1 sec   (7002 perm/sec)   p_kst 5.904000e-01   p_cons 4.068000e-01   p_joint 6.346000e-01

Outputting figure to mutsig2_images.part000000000029/CALB2.5_860_10000_0.5904_0.4068_0.6346.png
                gene_name: CALB2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
CALCOCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
Cons ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
KS ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
CALCOCO1   10000 perm   2 sec   (6056 perm/sec)   p_kst 7.896000e-01   p_cons 6.734000e-01   p_joint 8.659000e-01

Outputting figure to mutsig2_images.part000000000029/CALCOCO1.5_2132_10000_0.7896_0.6734_0.8659.png
                gene_name: CALCOCO1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 38 percent done.
CAPN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
CAPN7   10000 perm   2 sec   (6118 perm/sec)   p_kst 3.981000e-01   p_cons 2.251000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN7.5_2526_10000_0.3981_0.2251_0.4007.png
                gene_name: CAPN7
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 39 percent done.
CALB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
CALB1   10000 perm   1 sec   (6993 perm/sec)   p_kst 3.865000e-01   p_cons 2.988000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000029/CALB1.4_830_10000_0.3865_0.2988_0.4114.png
                gene_name: CALB1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
CALN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
Cons ci ratio: 5.067232e-02	ci left: 3.648027e-01	ci right 3.838706e-01	k: 3743	n:10000
KS ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
CALN1   10000 perm   1 sec   (7521 perm/sec)   p_kst 7.518000e-01   p_cons 3.743000e-01   p_joint 8.323000e-01

Outputting figure to mutsig2_images.part000000000029/CALN1.4_810_10000_0.7518_0.3743_0.8323.png
                gene_name: CALN1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 42 percent done.
CAMK1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.663040e-02	ci left: 8.403028e-01	ci right 8.544942e-01	k: 8475	n:10000
KS ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
CAMK1D   10000 perm   1 sec   (6799 perm/sec)   p_kst 8.674000e-01   p_cons 8.475000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMK1D.4_1237_10000_0.8674_0.8475_1.png
                gene_name: CAMK1D
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CAND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.290354e-02	ci left: 4.451045e-01	ci right 4.647218e-01	k: 4549	n:10000
Cons ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
CAND2   10000 perm   2 sec   (5965 perm/sec)   p_kst 1.627000e-01   p_cons 8.754000e-01   p_joint 4.549000e-01

Outputting figure to mutsig2_images.part000000000029/CAND2.4_3771_10000_0.1627_0.8754_0.4549.png
                gene_name: CAND2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 45 percent done.
CAPN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
CAPN10   10000 perm   2 sec   (6316 perm/sec)   p_kst 4.167000e-01   p_cons 8.200000e-03   p_joint 1.420000e-02

Joint ci ratio: 1.671903e-01	ci left: 2.450986e-02	ci right 2.902913e-02	k: 534	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 3.259028e-02	ci left: 4.128475e-01	ci right 4.265758e-01	k: 8394	n:20000
CAPN10   20000 perm   4 sec   (5622 perm/sec)   p_kst 4.197000e-01   p_cons 8.950000e-03   p_joint 2.670000e-02

Joint ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
Cons ci ratio: 2.401915e-01	ci left: 7.742931e-03	ci right 9.887152e-03	k: 263	n:30000
KS ci ratio: 2.627658e-02	ci left: 4.202620e-01	ci right 4.314857e-01	k: 12776	n:30000
CAPN10   30000 perm   6 sec   (5347 perm/sec)   p_kst 4.258667e-01   p_cons 8.766667e-03   p_joint 3.526667e-02

Joint ci ratio: 9.366541e-02	ci left: 3.998176e-02	ci right 4.393509e-02	k: 1677	n:40000
Cons ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
KS ci ratio: 2.269691e-02	ci left: 4.222953e-01	ci right 4.320153e-01	k: 17086	n:40000
CAPN10   40000 perm   8 sec   (5189 perm/sec)   p_kst 4.271500e-01   p_cons 9.100000e-03   p_joint 4.192500e-02

Joint ci ratio: 8.991594e-02	ci left: 3.497104e-02	ci right 3.828304e-02	k: 1830	n:50000
Cons ci ratio: 1.845772e-01	ci left: 8.114471e-03	ci right 9.783290e-03	k: 446	n:50000
KS ci ratio: 2.032957e-02	ci left: 4.221194e-01	ci right 4.308091e-01	k: 21323	n:50000
CAPN10   50000 perm   10 sec   (5061 perm/sec)   p_kst 4.264600e-01   p_cons 8.920000e-03   p_joint 3.660000e-02

Joint ci ratio: 8.170042e-02	ci left: 3.543836e-02	ci right 3.847331e-02	k: 2216	n:60000
Cons ci ratio: 1.738743e-01	ci left: 7.669311e-03	ci right 9.145498e-03	k: 503	n:60000
KS ci ratio: 1.860436e-02	ci left: 4.212896e-01	ci right 4.292177e-01	k: 25515	n:60000
CAPN10   60000 perm   12 sec   (4951 perm/sec)   p_kst 4.252500e-01   p_cons 8.383333e-03   p_joint 3.693333e-02

Joint ci ratio: 7.479576e-02	ci left: 3.634314e-02	ci right 3.918106e-02	k: 2642	n:70000
Cons ci ratio: 1.619515e-01	ci left: 7.627499e-03	ci right 8.985162e-03	k: 580	n:70000
KS ci ratio: 1.730945e-02	ci left: 4.191794e-01	ci right 4.265128e-01	k: 29599	n:70000
CAPN10   70000 perm   14 sec   (4857 perm/sec)   p_kst 4.228429e-01   p_cons 8.285714e-03   p_joint 3.774286e-02

Joint ci ratio: 7.170470e-02	ci left: 3.471970e-02	ci right 3.731409e-02	k: 2880	n:80000
Cons ci ratio: 1.514919e-01	ci left: 7.670918e-03	ci right 8.940127e-03	k: 663	n:80000
KS ci ratio: 1.614704e-02	ci left: 4.207594e-01	ci right 4.276211e-01	k: 33935	n:80000
CAPN10   80000 perm   17 sec   (4765 perm/sec)   p_kst 4.241875e-01   p_cons 8.287500e-03   p_joint 3.600000e-02

Joint ci ratio: 6.116568e-02	ci left: 4.230791e-02	ci right 4.498827e-02	k: 3927	n:90000
Cons ci ratio: 1.423485e-01	ci left: 7.760478e-03	ci right 8.960423e-03	k: 751	n:90000
KS ci ratio: 1.522980e-02	ci left: 4.207572e-01	ci right 4.272255e-01	k: 38159	n:90000
CAPN10   90000 perm   19 sec   (4678 perm/sec)   p_kst 4.239889e-01   p_cons 8.344444e-03   p_joint 4.363333e-02

Joint ci ratio: 5.758981e-02	ci left: 4.300335e-02	ci right 4.556317e-02	k: 4427	n:100000
Cons ci ratio: 1.359952e-01	ci left: 7.679345e-03	ci right 8.809457e-03	k: 823	n:100000
KS ci ratio: 1.446098e-02	ci left: 4.204947e-01	ci right 4.266297e-01	k: 42356	n:100000
CAPN10   100000 perm   22 sec   (4595 perm/sec)   p_kst 4.235600e-01   p_cons 8.230000e-03   p_joint 4.427000e-02

Joint ci ratio: 5.579531e-02	ci left: 4.174594e-02	ci right 4.415096e-02	k: 4723	n:110000
Cons ci ratio: 1.310884e-01	ci left: 7.534781e-03	ci right 8.600492e-03	k: 886	n:110000
KS ci ratio: 1.380797e-02	ci left: 4.199327e-01	ci right 4.257805e-01	k: 46514	n:110000
CAPN10   110000 perm   24 sec   (4518 perm/sec)   p_kst 4.228545e-01   p_cons 8.054545e-03   p_joint 4.293636e-02

Joint ci ratio: 5.040009e-02	ci left: 4.678083e-02	ci right 4.920774e-02	k: 5758	n:120000
Cons ci ratio: 1.262753e-01	ci left: 7.463357e-03	ci right 8.477304e-03	k: 955	n:120000
KS ci ratio: 1.323110e-02	ci left: 4.196530e-01	ci right 4.252507e-01	k: 50694	n:120000
CAPN10   120000 perm   27 sec   (4441 perm/sec)   p_kst 4.224500e-01   p_cons 7.958333e-03   p_joint 4.798333e-02

Joint ci ratio: 6.869153e-02	ci left: 2.359833e-02	ci right 2.528452e-02	k: 3176	n:130000
Cons ci ratio: 1.155387e-01	ci left: 8.269556e-03	ci right 9.290998e-03	k: 1140	n:130000
KS ci ratio: 1.270133e-02	ci left: 4.201740e-01	ci right 4.255525e-01	k: 54972	n:130000
CAPN10   130000 perm   30 sec   (4370 perm/sec)   p_kst 4.228615e-01   p_cons 8.769231e-03   p_joint 2.443077e-02

Joint ci ratio: 6.281515e-02	ci left: 2.621348e-02	ci right 2.792047e-02	k: 3788	n:140000
Cons ci ratio: 1.115545e-01	ci left: 8.254891e-03	ci right 9.237047e-03	k: 1223	n:140000
KS ci ratio: 1.223137e-02	ci left: 4.205886e-01	ci right 4.257717e-01	k: 59245	n:140000
CAPN10   140000 perm   33 sec   (4298 perm/sec)   p_kst 4.231786e-01   p_cons 8.735714e-03   p_joint 2.705714e-02

Joint ci ratio: 5.419761e-02	ci left: 3.278589e-02	ci right 3.461886e-02	k: 5054	n:150000
Cons ci ratio: 1.070914e-01	ci left: 8.378972e-03	ci right 9.333491e-03	k: 1327	n:150000
KS ci ratio: 1.182000e-02	ci left: 4.205380e-01	ci right 4.255450e-01	k: 63456	n:150000
CAPN10   150000 perm   35 sec   (4229 perm/sec)   p_kst 4.230400e-01   p_cons 8.846667e-03   p_joint 3.369333e-02

Joint ci ratio: 5.632049e-02	ci left: 2.855920e-02	ci right 3.022041e-02	k: 4701	n:160000
Cons ci ratio: 1.038215e-01	ci left: 8.372523e-03	ci right 9.295407e-03	k: 1412	n:160000
KS ci ratio: 1.143975e-02	ci left: 4.208274e-01	ci right 4.256754e-01	k: 67720	n:160000
CAPN10   160000 perm   38 sec   (4161 perm/sec)   p_kst 4.232500e-01   p_cons 8.825000e-03   p_joint 2.938125e-02

Joint ci ratio: 5.555572e-02	ci left: 2.766190e-02	ci right 2.924836e-02	k: 4836	n:170000
Cons ci ratio: 1.008340e-01	ci left: 8.367225e-03	ci right 9.261412e-03	k: 1497	n:170000
KS ci ratio: 1.110281e-02	ci left: 4.206970e-01	ci right 4.253998e-01	k: 71918	n:170000
CAPN10   170000 perm   41 sec   (4099 perm/sec)   p_kst 4.230471e-01   p_cons 8.805882e-03   p_joint 2.844706e-02

Joint ci ratio: 4.499467e-02	ci left: 3.954999e-02	ci right 4.137596e-02	k: 7282	n:180000
Cons ci ratio: 9.846758e-02	ci left: 8.297812e-03	ci right 9.162567e-03	k: 1570	n:180000
KS ci ratio: 1.087373e-02	ci left: 4.169968e-01	ci right 4.215614e-01	k: 75470	n:180000
CAPN10   180000 perm   45 sec   (4040 perm/sec)   p_kst 4.192778e-01   p_cons 8.722222e-03   p_joint 4.045556e-02

Outputting figure to mutsig2_images.part000000000029/CAPN10.4_2222_180000_0.41928_0.0087222_0.040456.png
                gene_name: CAPN10
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.0087 
      ci_cons_bounds_left: 0.0083 
     ci_cons_bounds_right: 0.0092 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.041 

Current progress: 47 percent done.
CAPRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
CAPRIN1   10000 perm   2 sec   (6663 perm/sec)   p_kst 7.651000e-01   p_cons 2.171000e-01   p_joint 9.068000e-01

Outputting figure to mutsig2_images.part000000000029/CAPRIN1.4_2222_10000_0.7651_0.2171_0.9068.png
                gene_name: CAPRIN1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 48 percent done.
CAPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
CAPS2   10000 perm   2 sec   (6563 perm/sec)   p_kst 2.651000e-01   p_cons 1.718000e-01   p_joint 1.862000e-01

Outputting figure to mutsig2_images.part000000000029/CAPS2.4_1746_10000_0.2651_0.1718_0.1862.png
                gene_name: CAPS2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
CARD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
KS ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
CARD16   10000 perm   1 sec   (7143 perm/sec)   p_kst 9.315000e-01   p_cons 8.172000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CARD16.4_630_10000_0.9315_0.8172_1.png
                gene_name: CARD16
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
CACNG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
Cons ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CACNG6   10000 perm   1 sec   (8074 perm/sec)   p_kst 1   p_cons 2.804000e-01   p_joint 6.529000e-01

Outputting figure to mutsig2_images.part000000000029/CACNG6.3_799_10000_1_0.2804_0.6529.png
                gene_name: CACNG6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 53 percent done.
CALCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
CALCB   10000 perm   1 sec   (7602 perm/sec)   p_kst 8.001000e-01   p_cons 1.481000e-01   p_joint 4.288000e-01

Outputting figure to mutsig2_images.part000000000029/CALCB.3_396_10000_0.8001_0.1481_0.4288.png
                gene_name: CALCB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 55 percent done.
CALML3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.405748e-02	ci left: 8.797106e-01	ci right 8.922635e-01	k: 8861	n:10000
KS ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
CALML3   10000 perm   1 sec   (7843 perm/sec)   p_kst 9.066000e-01   p_cons 8.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CALML3.2_454_10000_0.9066_0.8861_1.png
                gene_name: CALML3
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
CALR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
Cons ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
KS ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
CALR3   10000 perm   1 sec   (7205 perm/sec)   p_kst 7.081000e-01   p_cons 1.916000e-01   p_joint 5.552000e-01

Outputting figure to mutsig2_images.part000000000029/CALR3.3_1191_10000_0.7081_0.1916_0.5552.png
                gene_name: CALR3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 58 percent done.
CAMK2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
CAMK2B   10000 perm   2 sec   (6504 perm/sec)   p_kst 1.463000e-01   p_cons 4.475000e-01   p_joint 1.722000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK2B.3_2096_10000_0.1463_0.4475_0.1722.png
                gene_name: CAMK2B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 59 percent done.
CAMKV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
CAMKV   10000 perm   1 sec   (6725 perm/sec)   p_kst 2.388000e-01   p_cons 9.140000e-02   p_joint 1.622000e-01

Joint ci ratio: 5.942286e-02	ci left: 1.733632e-01	ci right 1.840304e-01	k: 3573	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 4.875063e-02	ci left: 2.383081e-01	ci right 2.502663e-01	k: 4885	n:20000
CAMKV   20000 perm   3 sec   (6010 perm/sec)   p_kst 2.442500e-01   p_cons 9.090000e-02   p_joint 1.786500e-01

Outputting figure to mutsig2_images.part000000000029/CAMKV.3_1546_20000_0.24425_0.0909_0.17865.png
                gene_name: CAMKV
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
CAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
CAND1   10000 perm   2 sec   (5956 perm/sec)   p_kst 2.178000e-01   p_cons 4.417000e-01   p_joint 2.178000e-01

Outputting figure to mutsig2_images.part000000000029/CAND1.3_3753_10000_0.2178_0.4417_0.2178.png
                gene_name: CAND1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 62 percent done.
CANT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
KS ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
CANT1   10000 perm   1 sec   (7300 perm/sec)   p_kst 8.460000e-01   p_cons 7.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CANT1.3_1218_10000_0.846_0.7794_1.png
                gene_name: CANT1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CAPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
KS ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
CAPG   10000 perm   1 sec   (7325 perm/sec)   p_kst 2.723000e-01   p_cons 2.486000e-01   p_joint 3.026000e-01

Outputting figure to mutsig2_images.part000000000029/CAPG.3_1083_10000_0.2723_0.2486_0.3026.png
                gene_name: CAPG
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 66 percent done.
CAPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
Cons ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
CAPN13   10000 perm   1 sec   (6796 perm/sec)   p_kst 5.378000e-01   p_cons 3.506000e-01   p_joint 6.169000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN13.3_2094_10000_0.5378_0.3506_0.6169.png
                gene_name: CAPN13
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 67 percent done.
CAPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
Cons ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
KS ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
CAPN2   10000 perm   1 sec   (6668 perm/sec)   p_kst 8.420000e-01   p_cons 5.340000e-02   p_joint 3.626000e-01

Joint ci ratio: 5.431838e-02	ci left: 2.009574e-01	ci right 2.122280e-01	k: 4131	n:20000
Cons ci ratio: 1.187710e-01	ci left: 4.857450e-02	ci right 5.475667e-02	k: 1032	n:20000
KS ci ratio: 1.196952e-02	ci left: 8.377313e-01	ci right 8.478688e-01	k: 16857	n:20000
CAPN2   20000 perm   3 sec   (5904 perm/sec)   p_kst 8.428500e-01   p_cons 5.160000e-02   p_joint 2.065500e-01

Joint ci ratio: 4.082620e-02	ci left: 2.302444e-01	ci right 2.398737e-01	k: 7051	n:30000
Cons ci ratio: 9.725848e-02	ci left: 4.886307e-02	ci right 5.389093e-02	k: 1540	n:30000
KS ci ratio: 9.778427e-03	ci left: 8.385303e-01	ci right 8.468033e-01	k: 25281	n:30000
CAPN2   30000 perm   5 sec   (5620 perm/sec)   p_kst 8.427000e-01   p_cons 5.133333e-02   p_joint 2.350333e-01

Outputting figure to mutsig2_images.part000000000029/CAPN2.3_2194_30000_0.8427_0.051333_0.23503.png
                gene_name: CAPN2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 69 percent done.
CAPSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
CAPSL   10000 perm   1 sec   (7309 perm/sec)   p_kst 6.984000e-01   p_cons 1.499000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000029/CAPSL.3_643_10000_0.6984_0.1499_0.4799.png
                gene_name: CAPSL
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 70 percent done.
CARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
CARD8   10000 perm   1 sec   (6669 perm/sec)   p_kst 2.317000e-01   p_cons 9.280000e-01   p_joint 3.996000e-01

Outputting figure to mutsig2_images.part000000000029/CARD8.3_1662_10000_0.2317_0.928_0.3996.png
                gene_name: CARD8
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 72 percent done.
CACNG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
CACNG8   10000 perm   1 sec   (7282 perm/sec)   p_kst 7.062000e-01   p_cons 8.580000e-02   p_joint 1.101000e-01

Joint ci ratio: 2.147656e-02	ci left: 6.180972e-01	ci right 6.315665e-01	k: 12497	n:20000
Cons ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
KS ci ratio: 1.810023e-02	ci left: 6.946515e-01	ci right 7.073900e-01	k: 14021	n:20000
CACNG8   20000 perm   3 sec   (6425 perm/sec)   p_kst 7.010500e-01   p_cons 8.800000e-02   p_joint 6.248500e-01

Outputting figure to mutsig2_images.part000000000029/CACNG8.2_1294_20000_0.70105_0.088_0.62485.png
                gene_name: CACNG8
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 73 percent done.
CADM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
Cons ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
CADM1   10000 perm   1 sec   (7365 perm/sec)   p_kst 3.300000e-01   p_cons 1.420000e-01   p_joint 8.731000e-01

Outputting figure to mutsig2_images.part000000000029/CADM1.2_1369_10000_0.33_0.142_0.8731.png
                gene_name: CADM1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 75 percent done.
CALCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
CALCA   10000 perm   1 sec   (7825 perm/sec)   p_kst 3.464000e-01   p_cons 5.413000e-01   p_joint 5.578000e-01

Outputting figure to mutsig2_images.part000000000029/CALCA.2_602_10000_0.3464_0.5413_0.5578.png
                gene_name: CALCA
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 77 percent done.
CALHM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
CALHM1   10000 perm   1 sec   (7478 perm/sec)   p_kst 9.310000e-01   p_cons 7.451000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CALHM1.2_1049_10000_0.931_0.7451_1.png
                gene_name: CALHM1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CALM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
CALM1   10000 perm   1 sec   (7891 perm/sec)   p_kst 2.098000e-01   p_cons 9.911000e-01   p_joint 9.529000e-01

Outputting figure to mutsig2_images.part000000000029/CALM1.2_474_10000_0.2098_0.9911_0.9529.png
                gene_name: CALM1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 80 percent done.
CALU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
Cons ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
KS ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
CALU   10000 perm   1 sec   (7071 perm/sec)   p_kst 1.612000e-01   p_cons 7.578000e-01   p_joint 2.424000e-01

Outputting figure to mutsig2_images.part000000000029/CALU.2_1170_10000_0.1612_0.7578_0.2424.png
                gene_name: CALU
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 81 percent done.
CALY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
Cons ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
CALY   10000 perm   1 sec   (7769 perm/sec)   p_kst 2.533000e-01   p_cons 5.423000e-01   p_joint 1.874000e-01

Outputting figure to mutsig2_images.part000000000029/CALY.2_670_10000_0.2533_0.5423_0.1874.png
                gene_name: CALY
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 83 percent done.
CAMK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
CAMK1   10000 perm   1 sec   (7712 perm/sec)   p_kst 1.732000e-01   p_cons 9.695000e-01   p_joint 2.777000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK1.2_1157_10000_0.1732_0.9695_0.2777.png
                gene_name: CAMK1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 84 percent done.
CAMK2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
CAMK2D   10000 perm   1 sec   (7061 perm/sec)   p_kst 9.306000e-01   p_cons 9.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMK2D.2_1667_10000_0.9306_0.9468_1.png
                gene_name: CAMK2D
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
CAMK2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
Cons ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
CAMK2G   10000 perm   1 sec   (7247 perm/sec)   p_kst 6.037000e-01   p_cons 4.653000e-01   p_joint 9.081000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK2G.2_1855_10000_0.6037_0.4653_0.9081.png
                gene_name: CAMK2G
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 88 percent done.
CAMKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
CAMKK1   10000 perm   1 sec   (7108 perm/sec)   p_kst 3.820000e-01   p_cons 4.960000e-02   p_joint 4.407000e-01

Joint ci ratio: 9.112059e-03	ci left: 8.983052e-01	ci right 9.065774e-01	k: 18050	n:20000
Cons ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
KS ci ratio: 3.541357e-02	ci left: 3.731164e-01	ci right 3.866185e-01	k: 7597	n:20000
CAMKK1   20000 perm   3 sec   (6272 perm/sec)   p_kst 3.798500e-01   p_cons 4.720000e-02   p_joint 9.025000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.012337e-01	ci left: 4.518536e-02	ci right 5.003607e-02	k: 1427	n:30000
KS ci ratio: 2.868925e-02	ci left: 3.780591e-01	ci right 3.890968e-01	k: 11507	n:30000
CAMKK1   30000 perm   5 sec   (5961 perm/sec)   p_kst 3.835667e-01   p_cons 4.756667e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.764713e-02	ci left: 4.553384e-02	ci right 4.973214e-02	k: 1904	n:40000
KS ci ratio: 2.480755e-02	ci left: 3.795291e-01	ci right 3.890877e-01	k: 15372	n:40000
CAMKK1   40000 perm   7 sec   (5752 perm/sec)   p_kst 3.843000e-01   p_cons 4.760000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMKK1.2_1700_40000_0.3843_0.0476_1.png
                gene_name: CAMKK1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
KS ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
CAMP   10000 perm   1 sec   (7815 perm/sec)   p_kst 4.723000e-01   p_cons 5.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMP.2_529_10000_0.4723_0.5562_1.png
                gene_name: CAMP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CAMTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
CAMTA2   10000 perm   2 sec   (6296 perm/sec)   p_kst 3.887000e-01   p_cons 4.190000e-01   p_joint 5.043000e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA2.2_3861_10000_0.3887_0.419_0.5043.png
                gene_name: CAMTA2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 92 percent done.
CANX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
Cons ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
KS ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
CANX   10000 perm   1 sec   (6871 perm/sec)   p_kst 8.259000e-01   p_cons 1.209000e-01   p_joint 6.426000e-01

Joint ci ratio: 3.125537e-02	ci left: 4.333043e-01	ci right 4.471131e-01	k: 8804	n:20000
Cons ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
KS ci ratio: 1.290133e-02	ci left: 8.165765e-01	ci right 8.272298e-01	k: 16439	n:20000
CANX   20000 perm   3 sec   (6216 perm/sec)   p_kst 8.219500e-01   p_cons 1.166500e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000029/CANX.2_1835_20000_0.82195_0.11665_0.4402.png
                gene_name: CANX
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 94 percent done.
CAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
Cons ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
KS ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
CAP2   10000 perm   1 sec   (7241 perm/sec)   p_kst 6.889000e-01   p_cons 8.715000e-01   p_joint 7.794000e-01

Outputting figure to mutsig2_images.part000000000029/CAP2.2_1482_10000_0.6889_0.8715_0.7794.png
                gene_name: CAP2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 95 percent done.
CAPNS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
Cons ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
KS ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
CAPNS2   10000 perm   1 sec   (7768 perm/sec)   p_kst 8.238000e-01   p_cons 7.011000e-01   p_joint 9.691000e-01

Outputting figure to mutsig2_images.part000000000029/CAPNS2.2_751_10000_0.8238_0.7011_0.9691.png
                gene_name: CAPNS2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 97 percent done.
CAPZA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 5.454048e-03	ci left: 9.782366e-01	ci right 9.836781e-01	k: 9811	n:10000
CAPZA3   10000 perm   1 sec   (7605 perm/sec)   p_kst 9.811000e-01   p_cons 1.218000e-01   p_joint 2.703000e-01

Joint ci ratio: 8.864149e-03	ci left: 9.031453e-01	ci right 9.112358e-01	k: 18145	n:20000
Cons ci ratio: 7.399628e-02	ci left: 1.184782e-01	ci right 1.276317e-01	k: 2460	n:20000
KS ci ratio: 3.846720e-03	ci left: 9.791687e-01	ci right 9.829896e-01	k: 19623	n:20000
CAPZA3   20000 perm   3 sec   (6670 perm/sec)   p_kst 9.811500e-01   p_cons 1.230000e-01   p_joint 9.072500e-01

Outputting figure to mutsig2_images.part000000000029/CAPZA3.2_904_20000_0.98115_0.123_0.90725.png
                gene_name: CAPZA3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
CARD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
Cons ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
KS ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
CARD17   10000 perm   1 sec   (7967 perm/sec)   p_kst 9.640000e-02   p_cons 4.486000e-01   p_joint 2.065000e-01

Joint ci ratio: 5.680686e-02	ci left: 1.868086e-01	ci right 1.977810e-01	k: 3845	n:20000
Cons ci ratio: 3.098416e-02	ci left: 4.375968e-01	ci right 4.514193e-01	k: 8890	n:20000
KS ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
CARD17   20000 perm   3 sec   (6961 perm/sec)   p_kst 9.545000e-02   p_cons 4.445000e-01   p_joint 1.922500e-01

Outputting figure to mutsig2_images.part000000000029/CARD17.2_345_20000_0.09545_0.4445_0.19225.png
                gene_name: CARD17
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000029
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 29 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 4421799: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000030> was used as the working directory.
Started at Wed Oct 24 17:34:26 2012
Results reported at Wed Oct 24 20:40:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000030.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000030.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 30  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000030.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11258.61 sec.
    Max Memory :      5324 MB
    Max Swap   :      7727 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
30
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 30
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 30: processing genes 2625 - 2714
Calculating significance of each gene.
Using projection method.
2625	CARD9	9.296438e-01
2626	CARHSP1	1
2627	CARKD	8.708531e-01
2628	CARM1	5.295191e-01
2629	CARNS1	8.087258e-02
2630	CARS	1
2631	CARS2	9.609422e-01
2632	CARTPT	2.512749e-01
2633	CASC1	9.115093e-01
2634	CASC3	7.016752e-01
2635	CASC4	5.198680e-01
2636	CASC5	9.999482e-01
2637	CASD1	6.173813e-01
2638	CASK	9.109465e-01
2639	CASKIN1	9.538055e-01
2640	CASKIN2	9.712840e-01
2641	CASP1	7.284985e-01
2642	CASP10	3.004473e-01
2643	CASP14	1.371628e-01
2644	CASP2	2.225945e-02
2645	CASP3	2.020514e-01
2646	CASP4	3.746517e-01
In gene CASP5 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 1369    n = 1	mu =   3.35e-07
2647	CASP5	2.403952e-02
2648	CASP6	7.934542e-01
2649	CASP7	1
In gene CASP8 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 1753    n = 1	mu =   3.68e-07
2650	CASP8	5.198094e-01
2651	CASP8AP2	9.997380e-01
2652	CASP9	8.407475e-01
2653	CASQ1	4.835119e-01
2654	CASQ2	2.280182e-01
2655	CASR	1
2656	CASS4	1.243740e-01
2657	CAST	9.725238e-01
2658	CASZ1	9.749704e-01
2659	CAT	4.760845e-01
2660	CATSPER1	7.055435e-01
2661	CATSPER2	9.255995e-01
2662	CATSPER3	3.297274e-01
2663	CATSPER4	1
2664	CATSPERB	7.114857e-01
2665	CATSPERG	4.290212e-01
2666	CAV1	1
2667	CAV2	1
2668	CAV3	1.454006e-01
2669	CBARA1	1
2670	CBFA2T2	8.827353e-01
2671	CBFA2T3	3.818593e-01
2672	CBFB	6.840891e-01
2673	CBL	5.737986e-01
2674	CBLB	1
2675	CBLC	9.104592e-01
2676	CBLL1	6.673910e-01
2677	CBLN1	5.000271e-01
2678	CBLN2	4.581980e-02
2679	CBLN3	5.543355e-01
2680	CBLN4	3.355377e-01
2681	CBR1	1
2682	CBR3	1
2683	CBR4	4.566069e-01
2684	CBS	9.796056e-01
2685	CBWD1	2.333880e-01
2686	CBWD2	1
2687	CBWD6	5.419218e-01
2688	CBX1	1
2689	CBX2	3.696393e-01
2690	CBX3	2.249046e-01
2691	CBX4	4.897662e-01
2692	CBX5	1.692266e-01
2693	CBX6	5.561782e-01
2694	CBX7	6.249062e-01
2695	CBX8	1
2696	CBY1	1
2697	CC2D1A	5.804729e-01
2698	CC2D1B	5.892449e-01
2699	CC2D2A	8.590397e-01
2700	CC2D2B	2.956179e-01
2701	CCAR1	8.846119e-01
2702	CCBE1	3.045014e-01
2703	CCBL1	4.113937e-01
2704	CCBL2	1
2705	CCBP2	7.209633e-01
2706	CCDC101	1
2707	CCDC102A	8.989328e-01
2708	CCDC102B	3.917414e-02
2709	CCDC103	1
2710	CCDC104	1
2711	CCDC105	4.796020e-01
2712	CCDC106	5.571289e-02
2713	CCDC107	6.107666e-01
2714	CCDC108	9.957538e-01
Done

Running MutSig 2:
Scatter job 30: processing genes 2625 - 2714
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CASR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
KS ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
CASR   10000 perm   2 sec   (4686 perm/sec)   p_kst 8.966000e-01   p_cons 7.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASR.14_3291_10000_0.8966_0.7796_1.png
                gene_name: CASR
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
CCDC108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
Cons ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
CCDC108   10000 perm   3 sec   (3994 perm/sec)   p_kst 4.280000e-02   p_cons 2.319000e-01   p_joint 6.910000e-02

Joint ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
Cons ci ratio: 4.944712e-02	ci left: 2.331523e-01	ci right 2.450236e-01	k: 4781	n:20000
KS ci ratio: 1.292004e-01	ci left: 4.115060e-02	ci right 4.688292e-02	k: 879	n:20000
CCDC108   20000 perm   5 sec   (3642 perm/sec)   p_kst 4.395000e-02   p_cons 2.390500e-01   p_joint 9.035000e-02

Joint ci ratio: 7.822813e-02	ci left: 7.420408e-02	ci right 8.027809e-02	k: 2316	n:30000
Cons ci ratio: 4.115433e-02	ci left: 2.273984e-01	ci right 2.369869e-01	k: 6965	n:30000
KS ci ratio: 1.053673e-01	ci left: 4.177175e-02	ci right 4.645039e-02	k: 1322	n:30000
CCDC108   30000 perm   9 sec   (3521 perm/sec)   p_kst 4.406667e-02   p_cons 2.321667e-01   p_joint 7.720000e-02

Joint ci ratio: 7.708395e-02	ci left: 5.837946e-02	ci right 6.308456e-02	k: 2428	n:40000
Cons ci ratio: 3.567327e-02	ci left: 2.277214e-01	ci right 2.360175e-01	k: 9274	n:40000
KS ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
CCDC108   40000 perm   12 sec   (3436 perm/sec)   p_kst 4.445000e-02   p_cons 2.318500e-01   p_joint 6.070000e-02

Outputting figure to mutsig2_images.part000000000030/CCDC108.12_6058_40000_0.04445_0.23185_0.0607.png
                gene_name: CCDC108
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 4 percent done.
CASP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
CASP5   10000 perm   2 sec   (5259 perm/sec)   p_kst 7.348000e-01   p_cons 5.934000e-01   p_joint 8.839000e-01

Outputting figure to mutsig2_images.part000000000030/CASP5.10_1380_10000_0.7348_0.5934_0.8839.png
                gene_name: CASP5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 5 percent done.
CASP8AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.405695e-02	ci left: 7.175473e-01	ci right 7.351207e-01	k: 7264	n:10000
Cons ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
KS ci ratio: 2.004673e-02	ci left: 7.846201e-01	ci right 8.006090e-01	k: 7927	n:10000
CASP8AP2   10000 perm   2 sec   (4209 perm/sec)   p_kst 7.927000e-01   p_cons 3.730000e-01   p_joint 7.264000e-01

Outputting figure to mutsig2_images.part000000000030/CASP8AP2.10_5937_10000_0.7927_0.373_0.7264.png
                gene_name: CASP8AP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 7 percent done.
CASS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.626986e-02	ci left: 5.288695e-01	ci right 5.485080e-01	k: 5387	n:10000
Cons ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
KS ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
CASS4   10000 perm   2 sec   (5142 perm/sec)   p_kst 6.465000e-01   p_cons 1.765000e-01   p_joint 5.387000e-01

Outputting figure to mutsig2_images.part000000000030/CASS4.10_2385_10000_0.6465_0.1765_0.5387.png
                gene_name: CASS4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 9 percent done.
CBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
Cons ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
KS ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
CBL   10000 perm   2 sec   (4760 perm/sec)   p_kst 1.643000e-01   p_cons 3.160000e-01   p_joint 2.567000e-01

Outputting figure to mutsig2_images.part000000000030/CBL.9_2785_10000_0.1643_0.316_0.2567.png
                gene_name: CBL
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
CATSPERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
CATSPERG   10000 perm   2 sec   (4993 perm/sec)   p_kst 2.130000e-02   p_cons 1.292000e-01   p_joint 4.250000e-02

Joint ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
Cons ci ratio: 7.145284e-02	ci left: 1.261067e-01	ci right 1.355010e-01	k: 2615	n:20000
KS ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
CATSPERG   20000 perm   4 sec   (4503 perm/sec)   p_kst 2.260000e-02   p_cons 1.307500e-01   p_joint 3.475000e-02

Joint ci ratio: 1.400950e-01	ci left: 2.364901e-02	ci right 2.724369e-02	k: 762	n:30000
Cons ci ratio: 5.566949e-02	ci left: 1.378707e-01	ci right 1.457988e-01	k: 4254	n:30000
KS ci ratio: 1.482750e-01	ci left: 2.107635e-02	ci right 2.448360e-02	k: 682	n:30000
CATSPERG   30000 perm   7 sec   (4311 perm/sec)   p_kst 2.273333e-02   p_cons 1.418000e-01   p_joint 2.540000e-02

Joint ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
Cons ci ratio: 4.840204e-02	ci left: 1.374546e-01	ci right 1.442976e-01	k: 5634	n:40000
KS ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
CATSPERG   40000 perm   10 sec   (4165 perm/sec)   p_kst 2.217500e-02   p_cons 1.408500e-01   p_joint 2.817500e-02

Joint ci ratio: 1.154435e-01	ci left: 2.123730e-02	ci right 2.385853e-02	k: 1126	n:50000
Cons ci ratio: 4.209512e-02	ci left: 1.446799e-01	ci right 1.509211e-01	k: 7389	n:50000
KS ci ratio: 1.156010e-01	ci left: 2.117900e-02	ci right 2.379685e-02	k: 1123	n:50000
CATSPERG   50000 perm   12 sec   (4065 perm/sec)   p_kst 2.246000e-02   p_cons 1.477800e-01   p_joint 2.252000e-02

Joint ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
Cons ci ratio: 3.841983e-02	ci left: 1.450021e-01	ci right 1.506987e-01	k: 8870	n:60000
KS ci ratio: 1.062484e-01	ci left: 2.100346e-02	ci right 2.337640e-02	k: 1330	n:60000
CATSPERG   60000 perm   15 sec   (3987 perm/sec)   p_kst 2.216667e-02   p_cons 1.478333e-01   p_joint 1.960000e-02

Joint ci ratio: 9.382695e-02	ci left: 2.318589e-02	ci right 2.548234e-02	k: 1702	n:70000
Cons ci ratio: 3.814092e-02	ci left: 1.286079e-01	ci right 1.336227e-01	k: 9177	n:70000
KS ci ratio: 9.775179e-02	ci left: 2.135828e-02	ci right 2.356726e-02	k: 1571	n:70000
CATSPERG   70000 perm   18 sec   (3909 perm/sec)   p_kst 2.244286e-02   p_cons 1.311000e-01   p_joint 2.431429e-02

Outputting figure to mutsig2_images.part000000000030/CATSPERG.8_3592_70000_0.022443_0.1311_0.024314.png
                gene_name: CATSPERG
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 12 percent done.
CASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
CASP2   10000 perm   2 sec   (5697 perm/sec)   p_kst 8.777000e-01   p_cons 1.659000e-01   p_joint 4.460000e-01

Outputting figure to mutsig2_images.part000000000030/CASP2.7_1403_10000_0.8777_0.1659_0.446.png
                gene_name: CASP2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 14 percent done.
CASZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
Cons ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
KS ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
CASZ1   10000 perm   2 sec   (4482 perm/sec)   p_kst 5.023000e-01   p_cons 2.079000e-01   p_joint 5.091000e-01

Outputting figure to mutsig2_images.part000000000030/CASZ1.7_5356_10000_0.5023_0.2079_0.5091.png
                gene_name: CASZ1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 16 percent done.
CASP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
Cons ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
CASP10   10000 perm   2 sec   (5377 perm/sec)   p_kst 1.597000e-01   p_cons 4.312000e-01   p_joint 2.221000e-01

Outputting figure to mutsig2_images.part000000000030/CASP10.6_1760_10000_0.1597_0.4312_0.2221.png
                gene_name: CASP10
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
CC2D1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
KS ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
CC2D1A   10000 perm   2 sec   (5069 perm/sec)   p_kst 7.383000e-01   p_cons 9.150000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CC2D1A.6_2972_10000_0.7383_0.915_1.png
                gene_name: CC2D1A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
CCDC102B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
Cons ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
KS ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
CCDC102B   10000 perm   2 sec   (5196 perm/sec)   p_kst 5.288000e-01   p_cons 7.770000e-02   p_joint 2.899000e-01

Joint ci ratio: 5.151684e-02	ci left: 2.186831e-01	ci right 2.302971e-01	k: 4489	n:20000
Cons ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
KS ci ratio: 2.595959e-02	ci left: 5.257560e-01	ci right 5.396345e-01	k: 10654	n:20000
CCDC102B   20000 perm   4 sec   (4657 perm/sec)   p_kst 5.327000e-01   p_cons 8.010000e-02   p_joint 2.244500e-01

Outputting figure to mutsig2_images.part000000000030/CCDC102B.6_1570_20000_0.5327_0.0801_0.22445.png
                gene_name: CCDC102B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
CARNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.469315e-02	ci left: 7.069489e-01	ci right 7.247252e-01	k: 7159	n:10000
Cons ci ratio: 5.732748e-02	ci left: 3.093726e-01	ci right 3.277332e-01	k: 3185	n:10000
KS ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
CARNS1   10000 perm   2 sec   (5539 perm/sec)   p_kst 5.316000e-01   p_cons 3.185000e-01   p_joint 7.159000e-01

Outputting figure to mutsig2_images.part000000000030/CARNS1.5_2889_10000_0.5316_0.3185_0.7159.png
                gene_name: CARNS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 23 percent done.
CASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
Cons ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
KS ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
CASD1   10000 perm   2 sec   (5013 perm/sec)   p_kst 9.352000e-01   p_cons 5.162000e-01   p_joint 8.725000e-01

Outputting figure to mutsig2_images.part000000000030/CASD1.5_2466_10000_0.9352_0.5162_0.8725.png
                gene_name: CASD1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 25 percent done.
CATSPER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
CATSPER1   10000 perm   2 sec   (5741 perm/sec)   p_kst 3.841000e-01   p_cons 2.389000e-01   p_joint 3.924000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER1.5_2391_10000_0.3841_0.2389_0.3924.png
                gene_name: CATSPER1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 26 percent done.
CATSPERB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
Cons ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
KS ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
CATSPERB   10000 perm   2 sec   (4843 perm/sec)   p_kst 9.070000e-02   p_cons 2.853000e-01   p_joint 1.993000e-01

Joint ci ratio: 6.397498e-02	ci left: 1.529700e-01	ci right 1.631296e-01	k: 3160	n:20000
Cons ci ratio: 4.384436e-02	ci left: 2.792471e-01	ci right 2.918153e-01	k: 5710	n:20000
KS ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
CATSPERB   20000 perm   5 sec   (4414 perm/sec)   p_kst 8.645000e-02   p_cons 2.855000e-01   p_joint 1.580000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPERB.5_3455_20000_0.08645_0.2855_0.158.png
                gene_name: CATSPERB
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 28 percent done.
CBLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
KS ci ratio: 4.193059e-02	ci left: 4.564835e-01	ci right 4.761362e-01	k: 4663	n:10000
CBLB   10000 perm   2 sec   (5174 perm/sec)   p_kst 4.663000e-01   p_cons 1.004000e-01   p_joint 2.782000e-01

Joint ci ratio: 4.666541e-02	ci left: 2.546754e-01	ci right 2.668942e-01	k: 5215	n:20000
Cons ci ratio: 8.271826e-02	ci left: 9.675894e-02	ci right 1.051575e-01	k: 2018	n:20000
KS ci ratio: 2.970251e-02	ci left: 4.585175e-01	ci right 4.723926e-01	k: 9309	n:20000
CBLB   20000 perm   4 sec   (4645 perm/sec)   p_kst 4.654500e-01   p_cons 1.009000e-01   p_joint 2.607500e-01

Outputting figure to mutsig2_images.part000000000030/CBLB.5_3021_20000_0.46545_0.1009_0.26075.png
                gene_name: CBLB
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 30 percent done.
CC2D1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
CC2D1B   10000 perm   2 sec   (5243 perm/sec)   p_kst 9.745000e-01   p_cons 8.200000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CC2D1B.5_2669_10000_0.9745_0.82_1.png
                gene_name: CC2D1B
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
CCBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
Cons ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
KS ci ratio: 1.767934e-02	ci left: 8.235089e-01	ci right 8.382978e-01	k: 8310	n:10000
CCBL1   10000 perm   2 sec   (5892 perm/sec)   p_kst 8.310000e-01   p_cons 5.157000e-01   p_joint 8.656000e-01

Outputting figure to mutsig2_images.part000000000030/CCBL1.5_1317_10000_0.831_0.5157_0.8656.png
                gene_name: CCBL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 33 percent done.
CASC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
Cons ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
KS ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
CASC5   10000 perm   2 sec   (4135 perm/sec)   p_kst 3.698000e-01   p_cons 8.561000e-01   p_joint 5.748000e-01

Outputting figure to mutsig2_images.part000000000030/CASC5.4_7133_10000_0.3698_0.8561_0.5748.png
                gene_name: CASC5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
CASKIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
Cons ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
CASKIN1   10000 perm   2 sec   (4609 perm/sec)   p_kst 8.780000e-02   p_cons 7.000000e-03   p_joint 1.770000e-02

Joint ci ratio: 3.086535e-01	ci left: 6.766163e-03	ci right 9.280034e-03	k: 159	n:20000
Cons ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
KS ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
CASKIN1   20000 perm   5 sec   (4191 perm/sec)   p_kst 8.660000e-02   p_cons 6.900000e-03   p_joint 7.950000e-03

Joint ci ratio: 1.890189e-01	ci left: 1.279637e-02	ci right 1.549893e-02	k: 423	n:30000
Cons ci ratio: 2.776569e-01	ci left: 5.684079e-03	ci right 7.546739e-03	k: 197	n:30000
KS ci ratio: 7.282749e-02	ci left: 8.485039e-02	ci right 9.129631e-02	k: 2641	n:30000
CASKIN1   30000 perm   7 sec   (4033 perm/sec)   p_kst 8.803333e-02   p_cons 6.566667e-03   p_joint 1.410000e-02

Joint ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
Cons ci ratio: 2.528019e-01	ci left: 5.219877e-03	ci right 6.753176e-03	k: 238	n:40000
KS ci ratio: 6.296945e-02	ci left: 8.553695e-02	ci right 9.112299e-02	k: 3532	n:40000
CASKIN1   40000 perm   10 sec   (3914 perm/sec)   p_kst 8.830000e-02   p_cons 5.950000e-03   p_joint 1.030000e-02

Joint ci ratio: 1.192326e-01	ci left: 1.989697e-02	ci right 2.243905e-02	k: 1057	n:50000
Cons ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
KS ci ratio: 5.634445e-02	ci left: 8.576775e-02	ci right 9.076017e-02	k: 4412	n:50000
CASKIN1   50000 perm   13 sec   (3812 perm/sec)   p_kst 8.824000e-02   p_cons 5.760000e-03   p_joint 2.114000e-02

Joint ci ratio: 1.221796e-01	ci left: 1.583522e-02	ci right 1.791189e-02	k: 1011	n:60000
Cons ci ratio: 2.083212e-01	ci left: 5.255462e-03	ci right 6.493069e-03	k: 351	n:60000
KS ci ratio: 5.144380e-02	ci left: 8.595898e-02	ci right 9.051427e-02	k: 5293	n:60000
CASKIN1   60000 perm   16 sec   (3754 perm/sec)   p_kst 8.821667e-02   p_cons 5.850000e-03   p_joint 1.685000e-02

Joint ci ratio: 1.250530e-01	ci left: 1.297653e-02	ci right 1.472125e-02	k: 968	n:70000
Cons ci ratio: 1.964280e-01	ci left: 5.101380e-03	ci right 6.225907e-03	k: 395	n:70000
KS ci ratio: 4.764185e-02	ci left: 8.608090e-02	ci right 9.029617e-02	k: 6172	n:70000
CASKIN1   70000 perm   19 sec   (3695 perm/sec)   p_kst 8.817143e-02   p_cons 5.642857e-03   p_joint 1.382857e-02

Joint ci ratio: 1.324060e-01	ci left: 1.011948e-02	ci right 1.156633e-02	k: 866	n:80000
Cons ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
KS ci ratio: 4.459561e-02	ci left: 8.610749e-02	ci right 9.004745e-02	k: 7045	n:80000
CASKIN1   80000 perm   22 sec   (3640 perm/sec)   p_kst 8.806250e-02   p_cons 5.700000e-03   p_joint 1.082500e-02

Joint ci ratio: 1.304509e-01	ci left: 9.284961e-03	ci right 1.059136e-02	k: 893	n:90000
Cons ci ratio: 1.720720e-01	ci left: 5.239861e-03	ci right 6.236846e-03	k: 515	n:90000
KS ci ratio: 4.200378e-02	ci left: 8.637702e-02	ci right 9.009401e-02	k: 7940	n:90000
CASKIN1   90000 perm   25 sec   (3589 perm/sec)   p_kst 8.822222e-02   p_cons 5.722222e-03   p_joint 9.922222e-03

Joint ci ratio: 1.411841e-01	ci left: 7.109648e-03	ci right 8.199201e-03	k: 764	n:100000
Cons ci ratio: 1.635771e-01	ci left: 5.242784e-03	ci right 6.186233e-03	k: 570	n:100000
KS ci ratio: 3.995351e-02	ci left: 8.605293e-02	ci right 8.957102e-02	k: 8780	n:100000
CASKIN1   100000 perm   28 sec   (3541 perm/sec)   p_kst 8.780000e-02   p_cons 5.700000e-03   p_joint 7.640000e-03

Joint ci ratio: 1.433237e-01	ci left: 6.270237e-03	ci right 7.246950e-03	k: 742	n:110000
Cons ci ratio: 1.559772e-01	ci left: 5.263642e-03	ci right 6.162720e-03	k: 627	n:110000
KS ci ratio: 3.800175e-02	ci left: 8.652146e-02	ci right 8.988211e-02	k: 9701	n:110000
CASKIN1   110000 perm   31 sec   (3493 perm/sec)   p_kst 8.819091e-02   p_cons 5.700000e-03   p_joint 6.745455e-03

Joint ci ratio: 1.386540e-01	ci left: 6.157702e-03	ci right 7.083050e-03	k: 793	n:120000
Cons ci ratio: 1.501202e-01	ci left: 5.225710e-03	ci right 6.081779e-03	k: 677	n:120000
KS ci ratio: 3.639901e-02	ci left: 8.652691e-02	ci right 8.974303e-02	k: 10575	n:120000
CASKIN1   120000 perm   35 sec   (3444 perm/sec)   p_kst 8.812500e-02   p_cons 5.641667e-03   p_joint 6.608333e-03

Joint ci ratio: 1.031990e-01	ci left: 1.041011e-02	ci right 1.155032e-02	k: 1426	n:130000
Cons ci ratio: 1.437885e-01	ci left: 5.275725e-03	ci right 6.100406e-03	k: 738	n:130000
KS ci ratio: 3.493150e-02	ci left: 8.677063e-02	ci right 8.986315e-02	k: 11480	n:130000
CASKIN1   130000 perm   38 sec   (3396 perm/sec)   p_kst 8.830769e-02   p_cons 5.676923e-03   p_joint 1.096923e-02

Joint ci ratio: 1.049244e-01	ci left: 9.353202e-03	ci right 1.039582e-02	k: 1381	n:140000
Cons ci ratio: 1.389844e-01	ci left: 5.257175e-03	ci right 6.049225e-03	k: 790	n:140000
KS ci ratio: 3.370145e-02	ci left: 8.663442e-02	ci right 8.961123e-02	k: 12336	n:140000
CASKIN1   140000 perm   42 sec   (3353 perm/sec)   p_kst 8.811429e-02   p_cons 5.642857e-03   p_joint 9.864286e-03

Joint ci ratio: 1.055389e-01	ci left: 8.632117e-03	ci right 9.600334e-03	k: 1366	n:150000
Cons ci ratio: 1.345514e-01	ci left: 5.247939e-03	ci right 6.011361e-03	k: 843	n:150000
KS ci ratio: 3.252796e-02	ci left: 8.683570e-02	ci right 8.971357e-02	k: 13240	n:150000
CASKIN1   150000 perm   45 sec   (3313 perm/sec)   p_kst 8.826667e-02   p_cons 5.620000e-03   p_joint 9.106667e-03

Joint ci ratio: 1.252863e-01	ci left: 5.700099e-03	ci right 6.467964e-03	k: 972	n:160000
Cons ci ratio: 1.309584e-01	ci left: 5.203930e-03	ci right 5.939161e-03	k: 890	n:160000
KS ci ratio: 3.189515e-02	ci left: 8.488502e-02	ci right 8.764249e-02	k: 13801	n:160000
CASKIN1   160000 perm   49 sec   (3271 perm/sec)   p_kst 8.625625e-02   p_cons 5.562500e-03   p_joint 6.075000e-03

Joint ci ratio: 1.289585e-01	ci left: 5.057142e-03	ci right 5.759887e-03	k: 918	n:170000
Cons ci ratio: 1.278443e-01	ci left: 5.148252e-03	ci right 5.857008e-03	k: 934	n:170000
KS ci ratio: 3.092396e-02	ci left: 8.502185e-02	ci right 8.769816e-02	k: 14680	n:170000
CASKIN1   170000 perm   53 sec   (3231 perm/sec)   p_kst 8.635294e-02   p_cons 5.494118e-03   p_joint 5.400000e-03

Joint ci ratio: 1.291901e-01	ci left: 4.760014e-03	ci right 5.422746e-03	k: 915	n:180000
Cons ci ratio: 1.239907e-01	ci left: 5.179697e-03	ci right 5.869709e-03	k: 993	n:180000
KS ci ratio: 3.001001e-02	ci left: 8.528254e-02	ci right 8.788635e-02	k: 15584	n:180000
CASKIN1   180000 perm   56 sec   (3191 perm/sec)   p_kst 8.657778e-02   p_cons 5.516667e-03   p_joint 5.083333e-03

Joint ci ratio: 1.265953e-01	ci left: 4.703079e-03	ci right 5.343745e-03	k: 953	n:190000
Cons ci ratio: 1.207545e-01	ci left: 5.182593e-03	ci right 5.853683e-03	k: 1047	n:190000
KS ci ratio: 2.920653e-02	ci left: 8.533383e-02	ci right 8.786827e-02	k: 16453	n:190000
CASKIN1   190000 perm   60 sec   (3150 perm/sec)   p_kst 8.659474e-02   p_cons 5.510526e-03   p_joint 5.015789e-03

Joint ci ratio: 1.352109e-01	ci left: 3.901951e-03	ci right 4.472567e-03	k: 836	n:200000
Cons ci ratio: 1.175448e-01	ci left: 5.204824e-03	ci right 5.859633e-03	k: 1105	n:200000
KS ci ratio: 2.851841e-02	ci left: 8.508277e-02	ci right 8.754923e-02	k: 17262	n:200000
CASKIN1   200000 perm   64 sec   (3109 perm/sec)   p_kst 8.631000e-02   p_cons 5.525000e-03   p_joint 4.180000e-03

Joint ci ratio: 1.617072e-01	ci left: 2.564796e-03	ci right 3.020529e-03	k: 585	n:210000
Cons ci ratio: 1.148264e-01	ci left: 5.202021e-03	ci right 5.840316e-03	k: 1158	n:210000
KS ci ratio: 2.781362e-02	ci left: 8.521116e-02	ci right 8.761932e-02	k: 18146	n:210000
CASKIN1   210000 perm   68 sec   (3072 perm/sec)   p_kst 8.640952e-02   p_cons 5.514286e-03   p_joint 2.785714e-03

Joint ci ratio: 1.578482e-01	ci left: 2.574764e-03	ci right 3.020315e-03	k: 614	n:220000
Cons ci ratio: 1.124750e-01	ci left: 5.181958e-03	ci right 5.803907e-03	k: 1207	n:220000
KS ci ratio: 2.719226e-02	ci left: 8.513431e-02	ci right 8.748570e-02	k: 18987	n:220000
CASKIN1   220000 perm   73 sec   (3034 perm/sec)   p_kst 8.630455e-02   p_cons 5.486364e-03   p_joint 2.790909e-03

Joint ci ratio: 1.564610e-01	ci left: 2.508756e-03	ci right 2.938711e-03	k: 625	n:230000
Cons ci ratio: 1.103949e-01	ci left: 5.151076e-03	ci right 5.757142e-03	k: 1253	n:230000
KS ci ratio: 2.660783e-02	ci left: 8.508197e-02	ci right 8.738064e-02	k: 19832	n:230000
CASKIN1   230000 perm   77 sec   (3003 perm/sec)   p_kst 8.622609e-02   p_cons 5.447826e-03   p_joint 2.717391e-03

Joint ci ratio: 1.522599e-01	ci left: 2.544429e-03	ci right 2.967722e-03	k: 660	n:240000
Cons ci ratio: 1.080093e-01	ci left: 5.163410e-03	ci right 5.756963e-03	k: 1309	n:240000
KS ci ratio: 2.604506e-02	ci left: 8.512149e-02	ci right 8.737185e-02	k: 20698	n:240000
CASKIN1   240000 perm   81 sec   (2971 perm/sec)   p_kst 8.624167e-02   p_cons 5.454167e-03   p_joint 2.750000e-03

Joint ci ratio: 1.325923e-01	ci left: 3.252933e-03	ci right 3.718695e-03	k: 870	n:250000
Cons ci ratio: 1.054232e-01	ci left: 5.209941e-03	ci right 5.793614e-03	k: 1374	n:250000
KS ci ratio: 2.551979e-02	ci left: 8.513843e-02	ci right 8.734317e-02	k: 21559	n:250000
CASKIN1   250000 perm   85 sec   (2939 perm/sec)   p_kst 8.623600e-02   p_cons 5.496000e-03   p_joint 3.480000e-03

Joint ci ratio: 1.297189e-01	ci left: 3.272901e-03	ci right 3.730585e-03	k: 909	n:260000
Cons ci ratio: 1.025145e-01	ci left: 5.305517e-03	ci right 5.882511e-03	k: 1453	n:260000
KS ci ratio: 2.504402e-02	ci left: 8.503594e-02	ci right 8.719638e-02	k: 22389	n:260000
CASKIN1   260000 perm   89 sec   (2908 perm/sec)   p_kst 8.611154e-02   p_cons 5.588462e-03   p_joint 3.496154e-03

Joint ci ratio: 1.420866e-01	ci left: 2.611333e-03	ci right 3.014272e-03	k: 758	n:270000
Cons ci ratio: 1.003952e-01	ci left: 5.332823e-03	ci right 5.900090e-03	k: 1515	n:270000
KS ci ratio: 2.457538e-02	ci left: 8.505925e-02	ci right 8.717927e-02	k: 23251	n:270000
CASKIN1   270000 perm   94 sec   (2878 perm/sec)   p_kst 8.611481e-02   p_cons 5.611111e-03   p_joint 2.807407e-03

Joint ci ratio: 1.397143e-01	ci left: 2.607655e-03	ci right 3.002748e-03	k: 784	n:280000
Cons ci ratio: 9.884407e-02	ci left: 5.309520e-03	ci right 5.865075e-03	k: 1563	n:280000
KS ci ratio: 2.415787e-02	ci left: 8.491431e-02	ci right 8.699427e-02	k: 24066	n:280000
CASKIN1   280000 perm   98 sec   (2848 perm/sec)   p_kst 8.595000e-02   p_cons 5.582143e-03   p_joint 2.800000e-03

Joint ci ratio: 1.406220e-01	ci left: 2.484451e-03	ci right 2.863528e-03	k: 774	n:290000
Cons ci ratio: 9.691028e-02	ci left: 5.338360e-03	ci right 5.885384e-03	k: 1626	n:290000
KS ci ratio: 2.373589e-02	ci left: 8.494429e-02	ci right 8.698813e-02	k: 24929	n:290000
CASKIN1   290000 perm   103 sec   (2819 perm/sec)   p_kst 8.596207e-02   p_cons 5.606897e-03   p_joint 2.668966e-03

Joint ci ratio: 1.389311e-01	ci left: 2.462752e-03	ci right 2.833626e-03	k: 793	n:300000
Cons ci ratio: 9.539844e-02	ci left: 5.329579e-03	ci right 5.866707e-03	k: 1678	n:300000
KS ci ratio: 2.335709e-02	ci left: 8.482667e-02	ci right 8.683467e-02	k: 25748	n:300000
CASKIN1   300000 perm   107 sec   (2791 perm/sec)   p_kst 8.582667e-02   p_cons 5.593333e-03   p_joint 2.643333e-03

Joint ci ratio: 1.384138e-01	ci left: 2.401987e-03	ci right 2.762251e-03	k: 799	n:310000
Cons ci ratio: 9.398252e-02	ci left: 5.318275e-03	ci right 5.845871e-03	k: 1729	n:310000
KS ci ratio: 2.296138e-02	ci left: 8.495114e-02	ci right 8.692757e-02	k: 26640	n:310000
CASKIN1   310000 perm   112 sec   (2761 perm/sec)   p_kst 8.593548e-02   p_cons 5.577419e-03   p_joint 2.577419e-03

Joint ci ratio: 1.358884e-01	ci left: 2.417459e-03	ci right 2.772894e-03	k: 829	n:320000
Cons ci ratio: 9.244532e-02	ci left: 5.329105e-03	ci right 5.848660e-03	k: 1787	n:320000
KS ci ratio: 2.260443e-02	ci left: 8.493442e-02	ci right 8.687934e-02	k: 27489	n:320000
CASKIN1   320000 perm   117 sec   (2732 perm/sec)   p_kst 8.590312e-02   p_cons 5.584375e-03   p_joint 2.590625e-03

Joint ci ratio: 9.029506e-02	ci left: 5.422280e-03	ci right 5.937974e-03	k: 1873	n:330000
Cons ci ratio: 9.115512e-02	ci left: 5.318613e-03	ci right 5.829522e-03	k: 1838	n:330000
KS ci ratio: 2.227265e-02	ci left: 8.485562e-02	ci right 8.676985e-02	k: 28317	n:330000
CASKIN1   330000 perm   122 sec   (2704 perm/sec)   p_kst 8.580909e-02   p_cons 5.569697e-03   p_joint 5.675758e-03

Outputting figure to mutsig2_images.part000000000030/CASKIN1.4_4376_330000_0.085809_0.0055697_0.0056758.png
                gene_name: CASKIN1
               theta_stop: 0.091 
                    nperm: 330000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0053 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0059 

Current progress: 37 percent done.
CASP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
CASP3   10000 perm   2 sec   (6109 perm/sec)   p_kst 3.720000e-01   p_cons 1.240000e-02   p_joint 8.770000e-02

Joint ci ratio: 9.019006e-02	ci left: 8.239466e-02	ci right 9.022610e-02	k: 1725	n:20000
Cons ci ratio: 2.281111e-01	ci left: 1.288916e-02	ci right 1.625414e-02	k: 290	n:20000
KS ci ratio: 3.605340e-02	ci left: 3.647475e-01	ci right 3.781899e-01	k: 7429	n:20000
CASP3   20000 perm   4 sec   (5477 perm/sec)   p_kst 3.714500e-01   p_cons 1.450000e-02   p_joint 8.625000e-02

Joint ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
Cons ci ratio: 1.846502e-01	ci left: 1.343225e-02	ci right 1.619621e-02	k: 443	n:30000
KS ci ratio: 2.968059e-02	ci left: 3.621736e-01	ci right 3.731187e-01	k: 11029	n:30000
CASP3   30000 perm   6 sec   (5235 perm/sec)   p_kst 3.676333e-01   p_cons 1.476667e-02   p_joint 5.136667e-02

Joint ci ratio: 5.942874e-02	ci left: 9.517713e-02	ci right 1.010314e-01	k: 3923	n:40000
Cons ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
KS ci ratio: 2.510367e-02	ci left: 3.739429e-01	ci right 3.834747e-01	k: 15148	n:40000
CASP3   40000 perm   8 sec   (5018 perm/sec)   p_kst 3.787000e-01   p_cons 1.460000e-02   p_joint 9.807500e-02

Joint ci ratio: 5.168358e-02	ci left: 1.005070e-01	ci right 1.058592e-01	k: 5158	n:50000
Cons ci ratio: 1.425423e-01	ci left: 1.383701e-02	ci right 1.597985e-02	k: 744	n:50000
KS ci ratio: 2.238128e-02	ci left: 3.759621e-01	ci right 3.844919e-01	k: 19011	n:50000
CASP3   50000 perm   10 sec   (4878 perm/sec)   p_kst 3.802200e-01   p_cons 1.488000e-02   p_joint 1.031600e-01

Joint ci ratio: 5.018047e-02	ci left: 8.999539e-02	ci right 9.464413e-02	k: 5538	n:60000
Cons ci ratio: 1.290285e-01	ci left: 1.417165e-02	ci right 1.614232e-02	k: 908	n:60000
KS ci ratio: 2.043150e-02	ci left: 3.763299e-01	ci right 3.841150e-01	k: 22813	n:60000
CASP3   60000 perm   13 sec   (4759 perm/sec)   p_kst 3.802167e-01   p_cons 1.513333e-02   p_joint 9.230000e-02

Joint ci ratio: 3.972826e-02	ci left: 1.196690e-01	ci right 1.245338e-01	k: 8546	n:70000
Cons ci ratio: 1.190873e-01	ci left: 1.433438e-02	ci right 1.616327e-02	k: 1066	n:70000
KS ci ratio: 1.893846e-02	ci left: 3.760600e-01	ci right 3.832643e-01	k: 26576	n:70000
CASP3   70000 perm   15 sec   (4652 perm/sec)   p_kst 3.796571e-01   p_cons 1.522857e-02   p_joint 1.220857e-01

Joint ci ratio: 5.751697e-02	ci left: 5.329448e-02	ci right 5.646290e-02	k: 4389	n:80000
Cons ci ratio: 1.116487e-01	ci left: 1.432709e-02	ci right 1.603334e-02	k: 1213	n:80000
KS ci ratio: 1.772411e-02	ci left: 3.760607e-01	ci right 3.827981e-01	k: 30354	n:80000
CASP3   80000 perm   18 sec   (4554 perm/sec)   p_kst 3.794250e-01   p_cons 1.516250e-02   p_joint 5.486250e-02

Joint ci ratio: 6.298133e-02	ci left: 3.996547e-02	ci right 4.257531e-02	k: 3713	n:90000
Cons ci ratio: 1.055286e-01	ci left: 1.430255e-02	ci right 1.590670e-02	k: 1358	n:90000
KS ci ratio: 1.686701e-02	ci left: 3.718800e-01	ci right 3.782169e-01	k: 33754	n:90000
CASP3   90000 perm   20 sec   (4466 perm/sec)   p_kst 3.750444e-01   p_cons 1.508889e-02   p_joint 4.125556e-02

Joint ci ratio: 6.481218e-02	ci left: 3.414506e-02	ci right 3.644200e-02	k: 3528	n:100000
Cons ci ratio: 9.997888e-02	ci left: 1.438250e-02	ci right 1.590581e-02	k: 1513	n:100000
KS ci ratio: 1.603583e-02	ci left: 3.710397e-01	ci right 3.770476e-01	k: 37404	n:100000
CASP3   100000 perm   23 sec   (4383 perm/sec)   p_kst 3.740400e-01   p_cons 1.513000e-02   p_joint 3.528000e-02

Outputting figure to mutsig2_images.part000000000030/CASP3.4_858_100000_0.37404_0.01513_0.03528.png
                gene_name: CASP3
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 39 percent done.
CASP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.374355e-02	ci left: 4.355261e-01	ci right 4.551058e-01	k: 4453	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
CASP8   10000 perm   2 sec   (6076 perm/sec)   p_kst 5.149000e-01   p_cons 2.094000e-01   p_joint 4.453000e-01

Outputting figure to mutsig2_images.part000000000030/CASP8.4_1753_10000_0.5149_0.2094_0.4453.png
                gene_name: CASP8
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 40 percent done.
CASQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
Cons ci ratio: 1.280331e-01	ci left: 8.018782e-02	ci right 9.125491e-02	k: 856	n:10000
KS ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
CASQ2   10000 perm   2 sec   (6231 perm/sec)   p_kst 8.527000e-01   p_cons 8.560000e-02   p_joint 3.593000e-01

Joint ci ratio: 3.604954e-02	ci left: 3.647973e-01	ci right 3.782401e-01	k: 7430	n:20000
Cons ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
KS ci ratio: 1.143408e-02	ci left: 8.496381e-01	ci right 8.594586e-01	k: 17092	n:20000
CASQ2   20000 perm   4 sec   (5255 perm/sec)   p_kst 8.546000e-01   p_cons 8.615000e-02   p_joint 3.715000e-01

Outputting figure to mutsig2_images.part000000000030/CASQ2.4_1244_20000_0.8546_0.08615_0.3715.png
                gene_name: CASQ2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 42 percent done.
CBLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
CBLN2   10000 perm   2 sec   (6086 perm/sec)   p_kst 1.400000e-01   p_cons 1.180000e-02   p_joint 3.320000e-02

Joint ci ratio: 1.364125e-01	ci left: 3.693936e-02	ci right 4.239551e-02	k: 792	n:20000
Cons ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
KS ci ratio: 6.973015e-02	ci left: 1.316715e-01	ci right 1.412345e-01	k: 2728	n:20000
CBLN2   20000 perm   4 sec   (5425 perm/sec)   p_kst 1.364000e-01   p_cons 1.150000e-02   p_joint 3.960000e-02

Joint ci ratio: 1.528002e-01	ci left: 1.982433e-02	ci right 2.313591e-02	k: 643	n:30000
Cons ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
KS ci ratio: 5.788398e-02	ci left: 1.287484e-01	ci right 1.364562e-01	k: 3977	n:30000
CBLN2   30000 perm   6 sec   (5151 perm/sec)   p_kst 1.325667e-01   p_cons 1.160000e-02   p_joint 2.143333e-02

Joint ci ratio: 1.373737e-01	ci left: 1.857798e-02	ci right 2.134233e-02	k: 797	n:40000
Cons ci ratio: 1.807237e-01	ci left: 1.057374e-02	ci right 1.269805e-02	k: 464	n:40000
KS ci ratio: 5.008560e-02	ci left: 1.294639e-01	ci right 1.361396e-01	k: 5311	n:40000
CBLN2   40000 perm   8 sec   (4996 perm/sec)   p_kst 1.327750e-01   p_cons 1.160000e-02   p_joint 1.992500e-02

Joint ci ratio: 8.815670e-02	ci left: 3.636057e-02	ci right 3.973334e-02	k: 1901	n:50000
Cons ci ratio: 1.615392e-01	ci left: 1.069909e-02	ci right 1.259825e-02	k: 581	n:50000
KS ci ratio: 4.462380e-02	ci left: 1.307084e-01	ci right 1.366941e-01	k: 6684	n:50000
CBLN2   50000 perm   10 sec   (4872 perm/sec)   p_kst 1.336800e-01   p_cons 1.162000e-02   p_joint 3.802000e-02

Joint ci ratio: 8.825535e-02	ci left: 3.042665e-02	ci right 3.325220e-02	k: 1909	n:60000
Cons ci ratio: 1.467646e-01	ci left: 1.088705e-02	ci right 1.262732e-02	k: 704	n:60000
KS ci ratio: 4.060445e-02	ci left: 1.317133e-01	ci right 1.371888e-01	k: 8066	n:60000
CBLN2   60000 perm   13 sec   (4767 perm/sec)   p_kst 1.344333e-01   p_cons 1.173333e-02   p_joint 3.181667e-02

Joint ci ratio: 7.811158e-02	ci left: 3.337039e-02	ci right 3.609692e-02	k: 2430	n:70000
Cons ci ratio: 1.360872e-01	ci left: 1.091655e-02	ci right 1.252430e-02	k: 819	n:70000
KS ci ratio: 3.769779e-02	ci left: 1.312720e-01	ci right 1.363299e-01	k: 9365	n:70000
CBLN2   70000 perm   15 sec   (4670 perm/sec)   p_kst 1.337857e-01   p_cons 1.170000e-02   p_joint 3.471429e-02

Joint ci ratio: 7.795697e-02	ci left: 2.944184e-02	ci right 3.184235e-02	k: 2450	n:80000
Cons ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
KS ci ratio: 3.398375e-02	ci left: 1.401713e-01	ci right 1.450296e-01	k: 11407	n:80000
CBLN2   80000 perm   17 sec   (4575 perm/sec)   p_kst 1.425875e-01   p_cons 1.146250e-02   p_joint 3.062500e-02

Joint ci ratio: 7.361400e-02	ci left: 2.941889e-02	ci right 3.167817e-02	k: 2748	n:90000
Cons ci ratio: 1.217403e-01	ci left: 1.069511e-02	ci right 1.209221e-02	k: 1024	n:90000
KS ci ratio: 3.196037e-02	ci left: 1.409175e-01	ci right 1.455055e-01	k: 12888	n:90000
CBLN2   90000 perm   20 sec   (4458 perm/sec)   p_kst 1.432000e-01   p_cons 1.137778e-02   p_joint 3.053333e-02

Joint ci ratio: 6.812343e-02	ci left: 3.095709e-02	ci right 3.315016e-02	k: 3204	n:100000
Cons ci ratio: 1.149273e-01	ci left: 1.083866e-02	ci right 1.216990e-02	k: 1149	n:100000
KS ci ratio: 3.027109e-02	ci left: 1.414318e-01	ci right 1.457889e-01	k: 14360	n:100000
CBLN2   100000 perm   23 sec   (4383 perm/sec)   p_kst 1.436000e-01   p_cons 1.149000e-02   p_joint 3.204000e-02

Joint ci ratio: 7.090258e-02	ci left: 2.607691e-02	ci right 2.800268e-02	k: 2973	n:110000
Cons ci ratio: 1.099312e-01	ci left: 1.079869e-02	ci right 1.206363e-02	k: 1256	n:110000
KS ci ratio: 2.885820e-02	ci left: 1.415686e-01	ci right 1.457229e-01	k: 15800	n:110000
CBLN2   110000 perm   26 sec   (4312 perm/sec)   p_kst 1.436364e-01   p_cons 1.141818e-02   p_joint 2.702727e-02

Joint ci ratio: 5.831964e-02	ci left: 3.522417e-02	ci right 3.734832e-02	k: 4353	n:120000
Cons ci ratio: 1.053006e-01	ci left: 1.081513e-02	ci right 1.202532e-02	k: 1369	n:120000
KS ci ratio: 2.767601e-02	ci left: 1.412475e-01	ci right 1.452198e-01	k: 17187	n:120000
CBLN2   120000 perm   28 sec   (4246 perm/sec)   p_kst 1.432250e-01   p_cons 1.140833e-02   p_joint 3.627500e-02

Joint ci ratio: 5.864136e-02	ci left: 3.225543e-02	ci right 3.421162e-02	k: 4319	n:130000
Cons ci ratio: 1.005940e-01	ci left: 1.096499e-02	ci right 1.213387e-02	k: 1500	n:130000
KS ci ratio: 2.740226e-02	ci left: 1.341409e-01	ci right 1.378754e-01	k: 17680	n:130000
CBLN2   130000 perm   31 sec   (4171 perm/sec)   p_kst 1.360000e-01   p_cons 1.153846e-02   p_joint 3.322308e-02

Joint ci ratio: 5.879764e-02	ci left: 2.986591e-02	ci right 3.168216e-02	k: 4307	n:140000
Cons ci ratio: 9.679750e-02	ci left: 1.101778e-02	ci right 1.214544e-02	k: 1620	n:140000
KS ci ratio: 2.641277e-02	ci left: 1.341444e-01	ci right 1.377421e-01	k: 19031	n:140000
CBLN2   140000 perm   34 sec   (4107 perm/sec)   p_kst 1.359357e-01   p_cons 1.157143e-02   p_joint 3.076429e-02

Outputting figure to mutsig2_images.part000000000030/CBLN2.4_687_140000_0.13594_0.011571_0.030764.png
                gene_name: CBLN2
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 44 percent done.
CBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
KS ci ratio: 1.704638e-02	ci left: 8.336838e-01	ci right 8.481171e-01	k: 8410	n:10000
CBX2   10000 perm   2 sec   (5406 perm/sec)   p_kst 8.410000e-01   p_cons 1.197000e-01   p_joint 3.915000e-01

Joint ci ratio: 4.483738e-02	ci left: 2.702595e-01	ci right 2.827055e-01	k: 5529	n:20000
Cons ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
KS ci ratio: 1.238479e-02	ci left: 8.283649e-01	ci right 8.387379e-01	k: 16672	n:20000
CBX2   20000 perm   4 sec   (4872 perm/sec)   p_kst 8.336000e-01   p_cons 1.153000e-01   p_joint 2.764500e-01

Outputting figure to mutsig2_images.part000000000030/CBX2.4_1967_20000_0.8336_0.1153_0.27645.png
                gene_name: CBX2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 46 percent done.
CBX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
Cons ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
KS ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
CBX4   10000 perm   2 sec   (5990 perm/sec)   p_kst 4.756000e-01   p_cons 7.372000e-01   p_joint 7.002000e-01

Outputting figure to mutsig2_images.part000000000030/CBX4.4_1703_10000_0.4756_0.7372_0.7002.png
                gene_name: CBX4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 47 percent done.
CC2D2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
KS ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
CC2D2A   10000 perm   2 sec   (4592 perm/sec)   p_kst 8.790000e-01   p_cons 9.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CC2D2A.4_5210_10000_0.879_0.901_1.png
                gene_name: CC2D2A
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CC2D2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
Cons ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
KS ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
CC2D2B   10000 perm   2 sec   (5698 perm/sec)   p_kst 3.029000e-01   p_cons 3.559000e-01   p_joint 3.913000e-01

Outputting figure to mutsig2_images.part000000000030/CC2D2B.4_1246_10000_0.3029_0.3559_0.3913.png
                gene_name: CC2D2B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 51 percent done.
CCAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
CCAR1   10000 perm   2 sec   (5046 perm/sec)   p_kst 1.240000e-01   p_cons 2.467000e-01   p_joint 2.534000e-01

Joint ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
Cons ci ratio: 5.083118e-02	ci left: 2.233399e-01	ci right 2.350389e-01	k: 4583	n:20000
KS ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
CCAR1   20000 perm   4 sec   (4588 perm/sec)   p_kst 1.257500e-01   p_cons 2.291500e-01   p_joint 9.460000e-02

Outputting figure to mutsig2_images.part000000000030/CCAR1.4_3549_20000_0.12575_0.22915_0.0946.png
                gene_name: CCAR1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 53 percent done.
CCBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
Cons ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
KS ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
CCBE1   10000 perm   2 sec   (5897 perm/sec)   p_kst 4.953000e-01   p_cons 9.450000e-02   p_joint 4.446000e-01

Joint ci ratio: 4.742157e-02	ci left: 2.485735e-01	ci right 2.606979e-01	k: 5092	n:20000
Cons ci ratio: 8.597664e-02	ci left: 9.008782e-02	ci right 9.823061e-02	k: 1882	n:20000
KS ci ratio: 2.800344e-02	ci left: 4.878970e-01	ci right 5.018045e-01	k: 9897	n:20000
CCBE1   20000 perm   4 sec   (5297 perm/sec)   p_kst 4.948500e-01   p_cons 9.410000e-02   p_joint 2.546000e-01

Outputting figure to mutsig2_images.part000000000030/CCBE1.4_1265_20000_0.49485_0.0941_0.2546.png
                gene_name: CCBE1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 54 percent done.
CCDC106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
Cons ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
KS ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
CCDC106   10000 perm   2 sec   (6079 perm/sec)   p_kst 5.785000e-01   p_cons 1.221000e-01   p_joint 3.939000e-01

Joint ci ratio: 3.419013e-02	ci left: 3.897609e-01	ci right 4.033692e-01	k: 7931	n:20000
Cons ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
KS ci ratio: 2.381925e-02	ci left: 5.683138e-01	ci right 5.820643e-01	k: 11504	n:20000
CCDC106   20000 perm   4 sec   (5454 perm/sec)   p_kst 5.752000e-01   p_cons 1.189500e-01   p_joint 3.965500e-01

Outputting figure to mutsig2_images.part000000000030/CCDC106.4_863_20000_0.5752_0.11895_0.39655.png
                gene_name: CCDC106
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 56 percent done.
CARM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
CARM1   10000 perm   2 sec   (6354 perm/sec)   p_kst 1.000000e-04   p_cons 2.661000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
CARM1   20000 perm   4 sec   (5572 perm/sec)   p_kst 5.000000e-05   p_cons 2.616000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.801350e-02	ci left: 2.566995e-01	ci right 2.666801e-01	k: 7850	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
CARM1   30000 perm   6 sec   (5280 perm/sec)   p_kst 3.333333e-05   p_cons 2.616667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 3.278494e-02	ci left: 2.589639e-01	ci right 2.676205e-01	k: 10531	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
CARM1   40000 perm   8 sec   (5108 perm/sec)   p_kst 2.500000e-05   p_cons 2.632750e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.929507e-02	ci left: 2.598017e-01	ci right 2.675458e-01	k: 13183	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
CARM1   50000 perm   10 sec   (4973 perm/sec)   p_kst 2.000000e-05   p_cons 2.636600e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.676078e-02	ci left: 2.598787e-01	ci right 2.669442e-01	k: 15804	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
CARM1   60000 perm   12 sec   (4858 perm/sec)   p_kst 1.666667e-05   p_cons 2.634000e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.473303e-02	ci left: 2.608084e-01	ci right 2.673540e-01	k: 18485	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
CARM1   70000 perm   15 sec   (4753 perm/sec)   p_kst 1.428571e-05   p_cons 2.640714e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.316682e-02	ci left: 2.604995e-01	ci right 2.666176e-01	k: 21084	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
CARM1   80000 perm   17 sec   (4659 perm/sec)   p_kst 1.250000e-05   p_cons 2.635500e-01   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.187171e-02	ci left: 2.601479e-01	ci right 2.659118e-01	k: 23672	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
CARM1   90000 perm   20 sec   (4566 perm/sec)   p_kst 1.111111e-05   p_cons 2.630222e-01   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.080047e-02	ci left: 2.593463e-01	ci right 2.648075e-01	k: 26207	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
CARM1   100000 perm   22 sec   (4480 perm/sec)   p_kst 1.000000e-05   p_cons 2.620700e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.981608e-02	ci left: 2.597929e-01	ci right 2.650015e-01	k: 28863	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
CARM1   110000 perm   25 sec   (4401 perm/sec)   p_kst 9.090909e-06   p_cons 2.623909e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.897204e-02	ci left: 2.599125e-01	ci right 2.648990e-01	k: 31488	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
CARM1   120000 perm   28 sec   (4326 perm/sec)   p_kst 8.333333e-06   p_cons 2.624000e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.822851e-02	ci left: 2.599946e-01	ci right 2.647852e-01	k: 34110	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
CARM1   130000 perm   31 sec   (4249 perm/sec)   p_kst 7.692308e-06   p_cons 2.623846e-01   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.755730e-02	ci left: 2.602607e-01	ci right 2.648777e-01	k: 36759	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
CARM1   140000 perm   34 sec   (4179 perm/sec)   p_kst 7.142857e-06   p_cons 2.625643e-01   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.698645e-02	ci left: 2.597827e-01	ci right 2.642399e-01	k: 39301	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
CARM1   150000 perm   36 sec   (4111 perm/sec)   p_kst 6.666667e-06   p_cons 2.620067e-01   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.645082e-02	ci left: 2.597656e-01	ci right 2.640806e-01	k: 41907	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
CARM1   160000 perm   40 sec   (4045 perm/sec)   p_kst 6.250000e-06   p_cons 2.619187e-01   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.595460e-02	ci left: 2.599519e-01	ci right 2.641385e-01	k: 44547	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
CARM1   170000 perm   43 sec   (3985 perm/sec)   p_kst 5.882353e-06   p_cons 2.620412e-01   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.550853e-02	ci left: 2.599254e-01	ci right 2.639934e-01	k: 47152	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
CARM1   180000 perm   46 sec   (3925 perm/sec)   p_kst 5.555556e-06   p_cons 2.619556e-01   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.510386e-02	ci left: 2.597508e-01	ci right 2.637091e-01	k: 49728	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
CARM1   190000 perm   49 sec   (3864 perm/sec)   p_kst 1.052632e-05   p_cons 2.617263e-01   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.472911e-02	ci left: 2.596000e-01	ci right 2.634570e-01	k: 52305	n:200000
KS ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
CARM1   200000 perm   53 sec   (3807 perm/sec)   p_kst 1.000000e-05   p_cons 2.615250e-01   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.436233e-02	ci left: 2.599634e-01	ci right 2.637288e-01	k: 54987	n:210000
KS ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
CARM1   210000 perm   56 sec   (3750 perm/sec)   p_kst 9.523810e-06   p_cons 2.618429e-01   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.402609e-02	ci left: 2.601725e-01	ci right 2.638520e-01	k: 57642	n:220000
KS ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
CARM1   220000 perm   60 sec   (3696 perm/sec)   p_kst 9.090909e-06   p_cons 2.620091e-01   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.370594e-02	ci left: 2.605465e-01	ci right 2.641465e-01	k: 60339	n:230000
KS ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
CARM1   230000 perm   63 sec   (3646 perm/sec)   p_kst 8.695652e-06   p_cons 2.623435e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.341859e-02	ci left: 2.605492e-01	ci right 2.640732e-01	k: 62954	n:240000
KS ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
CARM1   240000 perm   67 sec   (3596 perm/sec)   p_kst 8.333333e-06   p_cons 2.623083e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.314940e-02	ci left: 2.605285e-01	ci right 2.639810e-01	k: 65563	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
CARM1   250000 perm   70 sec   (3549 perm/sec)   p_kst 8.000000e-06   p_cons 2.622520e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.290053e-02	ci left: 2.603681e-01	ci right 2.637526e-01	k: 68135	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
CARM1   260000 perm   74 sec   (3504 perm/sec)   p_kst 7.692308e-06   p_cons 2.620577e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.265727e-02	ci left: 2.604641e-01	ci right 2.637855e-01	k: 70773	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
CARM1   270000 perm   78 sec   (3449 perm/sec)   p_kst 7.407407e-06   p_cons 2.621222e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.242762e-02	ci left: 2.605430e-01	ci right 2.638047e-01	k: 73408	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
CARM1   280000 perm   82 sec   (3406 perm/sec)   p_kst 7.142857e-06   p_cons 2.621714e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.222005e-02	ci left: 2.603005e-01	ci right 2.635043e-01	k: 75951	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
CARM1   290000 perm   86 sec   (3364 perm/sec)   p_kst 6.896552e-06   p_cons 2.619000e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.201145e-02	ci left: 2.604305e-01	ci right 2.635808e-01	k: 78601	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
CARM1   300000 perm   90 sec   (3321 perm/sec)   p_kst 6.666667e-06   p_cons 2.620033e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.181771e-02	ci left: 2.604044e-01	ci right 2.635033e-01	k: 81205	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
CARM1   310000 perm   94 sec   (3280 perm/sec)   p_kst 6.451613e-06   p_cons 2.619516e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.162723e-02	ci left: 2.605738e-01	ci right 2.636243e-01	k: 83871	n:320000
KS ci ratio: 1.753061e+00	ci left: 3.405839e-06	ci right 3.200465e-05	k: 4	n:320000
CARM1   320000 perm   99 sec   (3241 perm/sec)   p_kst 1.250000e-05   p_cons 2.620969e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.144755e-02	ci left: 2.606697e-01	ci right 2.636739e-01	k: 86516	n:330000
KS ci ratio: 1.753061e+00	ci left: 3.302632e-06	ci right 3.103482e-05	k: 4	n:330000
CARM1   330000 perm   103 sec   (3200 perm/sec)   p_kst 1.212121e-05   p_cons 2.621697e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.127998e-02	ci left: 2.606223e-01	ci right 2.635817e-01	k: 89114	n:340000
KS ci ratio: 1.753062e+00	ci left: 3.205495e-06	ci right 3.012204e-05	k: 4	n:340000
CARM1   340000 perm   108 sec   (3160 perm/sec)   p_kst 1.176471e-05   p_cons 2.621000e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.111932e-02	ci left: 2.605865e-01	ci right 2.635031e-01	k: 91715	n:350000
KS ci ratio: 1.753062e+00	ci left: 3.113910e-06	ci right 2.926142e-05	k: 4	n:350000
CARM1   350000 perm   112 sec   (3122 perm/sec)   p_kst 1.142857e-05   p_cons 2.620429e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.096092e-02	ci left: 2.607083e-01	ci right 2.635844e-01	k: 94372	n:360000
KS ci ratio: 1.753063e+00	ci left: 3.027412e-06	ci right 2.844861e-05	k: 4	n:360000
CARM1   360000 perm   117 sec   (3086 perm/sec)   p_kst 1.111111e-05   p_cons 2.621444e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.080970e-02	ci left: 2.608022e-01	ci right 2.636394e-01	k: 97021	n:370000
KS ci ratio: 1.753063e+00	ci left: 2.945590e-06	ci right 2.767974e-05	k: 4	n:370000
CARM1   370000 perm   121 sec   (3051 perm/sec)   p_kst 1.081081e-05   p_cons 2.622189e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.066777e-02	ci left: 2.607758e-01	ci right 2.635752e-01	k: 99626	n:380000
KS ci ratio: 1.753063e+00	ci left: 2.868074e-06	ci right 2.695133e-05	k: 4	n:380000
CARM1   380000 perm   126 sec   (3017 perm/sec)   p_kst 1.052632e-05   p_cons 2.621737e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.052619e-02	ci left: 2.609378e-01	ci right 2.637016e-01	k: 102304	n:390000
KS ci ratio: 1.753064e+00	ci left: 2.794533e-06	ci right 2.626027e-05	k: 4	n:390000
CARM1   390000 perm   131 sec   (2982 perm/sec)   p_kst 1.025641e-05   p_cons 2.623179e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.039541e-02	ci left: 2.608949e-01	ci right 2.636236e-01	k: 104903	n:400000
KS ci ratio: 1.753064e+00	ci left: 2.724670e-06	ci right 2.560377e-05	k: 4	n:400000
CARM1   400000 perm   136 sec   (2949 perm/sec)   p_kst 1.000000e-05   p_cons 2.622575e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.026459e-02	ci left: 2.610344e-01	ci right 2.637300e-01	k: 107576	n:410000
KS ci ratio: 1.753064e+00	ci left: 2.658214e-06	ci right 2.497929e-05	k: 4	n:410000
CARM1   410000 perm   141 sec   (2916 perm/sec)   p_kst 9.756098e-06   p_cons 2.623805e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.013922e-02	ci left: 2.611436e-01	ci right 2.638073e-01	k: 110239	n:420000
KS ci ratio: 1.753065e+00	ci left: 2.594923e-06	ci right 2.438455e-05	k: 4	n:420000
CARM1   420000 perm   146 sec   (2886 perm/sec)   p_kst 9.523810e-06   p_cons 2.624738e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.001917e-02	ci left: 2.612155e-01	ci right 2.638481e-01	k: 112888	n:430000
KS ci ratio: 1.753065e+00	ci left: 2.534576e-06	ci right 2.381748e-05	k: 4	n:430000
CARM1   430000 perm   151 sec   (2856 perm/sec)   p_kst 9.302326e-06   p_cons 2.625302e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 9.905838e-03	ci left: 2.611845e-01	ci right 2.637868e-01	k: 115493	n:440000
KS ci ratio: 1.753065e+00	ci left: 2.476972e-06	ci right 2.327617e-05	k: 4	n:440000
CARM1   440000 perm   156 sec   (2825 perm/sec)   p_kst 9.090909e-06   p_cons 2.624841e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 9.796610e-03	ci left: 2.611417e-01	ci right 2.637147e-01	k: 118092	n:450000
KS ci ratio: 1.753066e+00	ci left: 2.421928e-06	ci right 2.275893e-05	k: 4	n:450000
CARM1   450000 perm   161 sec   (2795 perm/sec)   p_kst 8.888889e-06   p_cons 2.624267e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 9.690589e-03	ci left: 2.611139e-01	ci right 2.636587e-01	k: 120697	n:460000
KS ci ratio: 1.753066e+00	ci left: 2.369277e-06	ci right 2.226417e-05	k: 4	n:460000
CARM1   460000 perm   166 sec   (2766 perm/sec)   p_kst 8.695652e-06   p_cons 2.623848e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 9.586094e-03	ci left: 2.611618e-01	ci right 2.636794e-01	k: 123337	n:470000
KS ci ratio: 1.753066e+00	ci left: 2.318867e-06	ci right 2.179047e-05	k: 4	n:470000
CARM1   470000 perm   172 sec   (2737 perm/sec)   p_kst 8.510638e-06   p_cons 2.624191e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 9.483938e-03	ci left: 2.612473e-01	ci right 2.637389e-01	k: 125996	n:480000
KS ci ratio: 1.753066e+00	ci left: 2.270557e-06	ci right 2.133650e-05	k: 4	n:480000
CARM1   480000 perm   177 sec   (2709 perm/sec)   p_kst 8.333333e-06   p_cons 2.624917e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 9.387898e-03	ci left: 2.612093e-01	ci right 2.636751e-01	k: 128596	n:490000
KS ci ratio: 1.753067e+00	ci left: 2.224219e-06	ci right 2.090107e-05	k: 4	n:490000
CARM1   490000 perm   183 sec   (2682 perm/sec)   p_kst 8.163265e-06   p_cons 2.624408e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 9.294430e-03	ci left: 2.611849e-01	ci right 2.636258e-01	k: 131202	n:500000
KS ci ratio: 1.753067e+00	ci left: 2.179735e-06	ci right 2.048305e-05	k: 4	n:500000
CARM1   500000 perm   189 sec   (2652 perm/sec)   p_kst 8.000000e-06   p_cons 2.624040e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 9.203233e-03	ci left: 2.611812e-01	ci right 2.635980e-01	k: 133818	n:510000
KS ci ratio: 1.753067e+00	ci left: 2.136995e-06	ci right 2.008142e-05	k: 4	n:510000
CARM1   510000 perm   194 sec   (2624 perm/sec)   p_kst 7.843137e-06   p_cons 2.623882e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 9.118338e-03	ci left: 2.610222e-01	ci right 2.634151e-01	k: 136353	n:520000
KS ci ratio: 1.753067e+00	ci left: 2.095899e-06	ci right 1.969524e-05	k: 4	n:520000
CARM1   520000 perm   200 sec   (2599 perm/sec)   p_kst 7.692308e-06   p_cons 2.622173e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 9.033677e-03	ci left: 2.609578e-01	ci right 2.633278e-01	k: 138935	n:530000
KS ci ratio: 1.753067e+00	ci left: 2.056353e-06	ci right 1.932364e-05	k: 4	n:530000
CARM1   530000 perm   206 sec   (2574 perm/sec)   p_kst 7.547170e-06   p_cons 2.621415e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 8.949145e-03	ci left: 2.609903e-01	ci right 2.633382e-01	k: 141568	n:540000
KS ci ratio: 1.753068e+00	ci left: 2.018273e-06	ci right 1.896580e-05	k: 4	n:540000
CARM1   540000 perm   212 sec   (2549 perm/sec)   p_kst 7.407407e-06   p_cons 2.621630e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 8.865651e-03	ci left: 2.610779e-01	ci right 2.634046e-01	k: 144232	n:550000
KS ci ratio: 1.753068e+00	ci left: 1.981577e-06	ci right 1.862096e-05	k: 4	n:550000
CARM1   550000 perm   218 sec   (2524 perm/sec)   p_kst 7.272727e-06   p_cons 2.622400e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 8.786479e-03	ci left: 2.610733e-01	ci right 2.633791e-01	k: 146846	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
CARM1   560000 perm   224 sec   (2501 perm/sec)   p_kst 1.785714e-06   p_cons 2.622250e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 8.710970e-03	ci left: 2.609990e-01	ci right 2.632842e-01	k: 149420	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
CARM1   570000 perm   230 sec   (2478 perm/sec)   p_kst 1.754386e-06   p_cons 2.621404e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 8.633564e-03	ci left: 2.610977e-01	ci right 2.633633e-01	k: 152093	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
CARM1   580000 perm   236 sec   (2455 perm/sec)   p_kst 1.724138e-06   p_cons 2.622293e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 8.560097e-03	ci left: 2.611068e-01	ci right 2.633532e-01	k: 154715	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
CARM1   590000 perm   243 sec   (2432 perm/sec)   p_kst 1.694915e-06   p_cons 2.622288e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 8.487634e-03	ci left: 2.611540e-01	ci right 2.633816e-01	k: 157360	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
CARM1   600000 perm   249 sec   (2409 perm/sec)   p_kst 1.666667e-06   p_cons 2.622667e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 8.416374e-03	ci left: 2.612275e-01	ci right 2.634370e-01	k: 160022	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
CARM1   610000 perm   256 sec   (2384 perm/sec)   p_kst 1.639344e-06   p_cons 2.623311e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 8.349174e-03	ci left: 2.611925e-01	ci right 2.633839e-01	k: 162618	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
CARM1   620000 perm   263 sec   (2362 perm/sec)   p_kst 1.612903e-06   p_cons 2.622871e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 8.281419e-03	ci left: 2.612585e-01	ci right 2.634326e-01	k: 165277	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
CARM1   630000 perm   269 sec   (2341 perm/sec)   p_kst 1.587302e-06   p_cons 2.623444e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 8.216183e-03	ci left: 2.612803e-01	ci right 2.634374e-01	k: 167909	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
CARM1   640000 perm   276 sec   (2320 perm/sec)   p_kst 1.562500e-06   p_cons 2.623578e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 8.155382e-03	ci left: 2.611633e-01	ci right 2.633034e-01	k: 170451	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
CARM1   650000 perm   283 sec   (2299 perm/sec)   p_kst 1.538462e-06   p_cons 2.622323e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 8.094197e-03	ci left: 2.611316e-01	ci right 2.632553e-01	k: 173047	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
CARM1   660000 perm   290 sec   (2278 perm/sec)   p_kst 1.515152e-06   p_cons 2.621924e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 8.035610e-03	ci left: 2.610413e-01	ci right 2.631488e-01	k: 175603	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
CARM1   670000 perm   297 sec   (2259 perm/sec)   p_kst 1.492537e-06   p_cons 2.620940e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 7.974425e-03	ci left: 2.611402e-01	ci right 2.632324e-01	k: 178286	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
CARM1   680000 perm   304 sec   (2240 perm/sec)   p_kst 1.470588e-06   p_cons 2.621853e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 7.917670e-03	ci left: 2.610872e-01	ci right 2.631641e-01	k: 180866	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
CARM1   690000 perm   310 sec   (2222 perm/sec)   p_kst 1.449275e-06   p_cons 2.621246e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 7.860484e-03	ci left: 2.611157e-01	ci right 2.631777e-01	k: 183502	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
CARM1   700000 perm   318 sec   (2204 perm/sec)   p_kst 1.428571e-06   p_cons 2.621457e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 7.805457e-03	ci left: 2.610970e-01	ci right 2.631444e-01	k: 186105	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
CARM1   710000 perm   325 sec   (2186 perm/sec)   p_kst 1.408451e-06   p_cons 2.621197e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 7.751987e-03	ci left: 2.610581e-01	ci right 2.630910e-01	k: 188693	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
CARM1   720000 perm   332 sec   (2168 perm/sec)   p_kst 1.388889e-06   p_cons 2.620736e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 7.700311e-03	ci left: 2.609847e-01	ci right 2.630035e-01	k: 191255	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
CARM1   730000 perm   340 sec   (2149 perm/sec)   p_kst 1.369863e-06   p_cons 2.619932e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 7.646820e-03	ci left: 2.610564e-01	ci right 2.630617e-01	k: 193923	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
CARM1   740000 perm   347 sec   (2133 perm/sec)   p_kst 1.351351e-06   p_cons 2.620581e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 7.595450e-03	ci left: 2.610743e-01	ci right 2.630662e-01	k: 196552	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
CARM1   750000 perm   354 sec   (2116 perm/sec)   p_kst 1.333333e-06   p_cons 2.620693e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 7.773139e-03	ci left: 2.497535e-01	ci right 2.517037e-01	k: 190553	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
CARM1   760000 perm   362 sec   (2098 perm/sec)   p_kst 1.315789e-06   p_cons 2.507276e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 7.722240e-03	ci left: 2.497724e-01	ci right 2.517100e-01	k: 193070	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
CARM1   770000 perm   370 sec   (2081 perm/sec)   p_kst 1.298701e-06   p_cons 2.507403e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 7.674763e-03	ci left: 2.496719e-01	ci right 2.515967e-01	k: 195494	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
CARM1   780000 perm   378 sec   (2065 perm/sec)   p_kst 1.282051e-06   p_cons 2.506333e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 7.628253e-03	ci left: 2.495688e-01	ci right 2.514811e-01	k: 197914	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
CARM1   790000 perm   385 sec   (2050 perm/sec)   p_kst 1.265823e-06   p_cons 2.505241e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 7.580635e-03	ci left: 2.495645e-01	ci right 2.514648e-01	k: 200411	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
CARM1   800000 perm   393 sec   (2034 perm/sec)   p_kst 1.250000e-06   p_cons 2.505137e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 7.534071e-03	ci left: 2.495517e-01	ci right 2.514402e-01	k: 202901	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
CARM1   810000 perm   401 sec   (2019 perm/sec)   p_kst 1.234568e-06   p_cons 2.504951e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 7.486798e-03	ci left: 2.496172e-01	ci right 2.514943e-01	k: 205455	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
CARM1   820000 perm   409 sec   (2003 perm/sec)   p_kst 1.219512e-06   p_cons 2.505549e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 7.441502e-03	ci left: 2.496259e-01	ci right 2.514916e-01	k: 207963	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
CARM1   830000 perm   417 sec   (1988 perm/sec)   p_kst 1.204819e-06   p_cons 2.505578e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 7.395963e-03	ci left: 2.496878e-01	ci right 2.515425e-01	k: 210516	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
CARM1   840000 perm   426 sec   (1973 perm/sec)   p_kst 1.190476e-06   p_cons 2.506143e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 7.352448e-03	ci left: 2.496872e-01	ci right 2.515310e-01	k: 213017	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
CARM1   850000 perm   434 sec   (1958 perm/sec)   p_kst 1.176471e-06   p_cons 2.506082e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 7.311525e-03	ci left: 2.495926e-01	ci right 2.514253e-01	k: 215437	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
CARM1   860000 perm   443 sec   (1943 perm/sec)   p_kst 1.162791e-06   p_cons 2.505081e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 7.269652e-03	ci left: 2.495840e-01	ci right 2.514061e-01	k: 217930	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
CARM1   870000 perm   451 sec   (1928 perm/sec)   p_kst 1.149425e-06   p_cons 2.504943e-01   p_joint 0

Joint ci ratio: 1.959994e+00	ci left: 7.030371e-07	ci right 9.962778e-06	k: 3	n:880000
Cons ci ratio: 7.229322e-03	ci left: 2.495325e-01	ci right 2.513441e-01	k: 220385	n:880000
KS ci ratio: 2.263208e+00	ci left: 2.752379e-07	ci right 8.209848e-06	k: 2	n:880000
CARM1   880000 perm   460 sec   (1915 perm/sec)   p_kst 2.272727e-06   p_cons 2.504375e-01   p_joint 3.409091e-06

Joint ci ratio: 1.959994e+00	ci left: 6.951378e-07	ci right 9.850837e-06	k: 3	n:890000
Cons ci ratio: 7.188021e-03	ci left: 2.495675e-01	ci right 2.513690e-01	k: 222916	n:890000
KS ci ratio: 2.263208e+00	ci left: 2.721454e-07	ci right 8.117603e-06	k: 2	n:890000
CARM1   890000 perm   468 sec   (1901 perm/sec)   p_kst 2.247191e-06   p_cons 2.504674e-01   p_joint 3.370787e-06

Joint ci ratio: 1.959995e+00	ci left: 6.874140e-07	ci right 9.741383e-06	k: 3	n:900000
Cons ci ratio: 7.147144e-03	ci left: 2.496162e-01	ci right 2.514077e-01	k: 225460	n:900000
KS ci ratio: 2.263208e+00	ci left: 2.691215e-07	ci right 8.027407e-06	k: 2	n:900000
CARM1   900000 perm   477 sec   (1888 perm/sec)   p_kst 2.222222e-06   p_cons 2.505111e-01   p_joint 3.333333e-06

Joint ci ratio: 1.959995e+00	ci left: 6.798600e-07	ci right 9.634335e-06	k: 3	n:910000
Cons ci ratio: 7.108496e-03	ci left: 2.495825e-01	ci right 2.513641e-01	k: 227930	n:910000
KS ci ratio: 2.263208e+00	ci left: 2.661642e-07	ci right 7.939194e-06	k: 2	n:910000
CARM1   910000 perm   485 sec   (1875 perm/sec)   p_kst 2.197802e-06   p_cons 2.504725e-01   p_joint 3.296703e-06

Joint ci ratio: 1.959995e+00	ci left: 6.724702e-07	ci right 9.529615e-06	k: 3	n:920000
Cons ci ratio: 7.070080e-03	ci left: 2.495703e-01	ci right 2.513421e-01	k: 230419	n:920000
KS ci ratio: 2.263208e+00	ci left: 2.632711e-07	ci right 7.852899e-06	k: 2	n:920000
CARM1   920000 perm   494 sec   (1861 perm/sec)   p_kst 2.173913e-06   p_cons 2.504554e-01   p_joint 3.260870e-06

Joint ci ratio: 1.959995e+00	ci left: 6.652393e-07	ci right 9.427146e-06	k: 3	n:930000
Cons ci ratio: 7.031111e-03	ci left: 2.496207e-01	ci right 2.513830e-01	k: 232966	n:930000
KS ci ratio: 2.263208e+00	ci left: 2.604402e-07	ci right 7.768460e-06	k: 2	n:930000
CARM1   930000 perm   503 sec   (1848 perm/sec)   p_kst 2.150538e-06   p_cons 2.505011e-01   p_joint 3.225806e-06

Joint ci ratio: 1.959995e+00	ci left: 6.581623e-07	ci right 9.326858e-06	k: 3	n:940000
Cons ci ratio: 6.993751e-03	ci left: 2.496179e-01	ci right 2.513708e-01	k: 235464	n:940000
KS ci ratio: 2.263208e+00	ci left: 2.576695e-07	ci right 7.685817e-06	k: 2	n:940000
CARM1   940000 perm   512 sec   (1835 perm/sec)   p_kst 2.127660e-06   p_cons 2.504936e-01   p_joint 3.191489e-06

Joint ci ratio: 1.959995e+00	ci left: 6.512343e-07	ci right 9.228680e-06	k: 3	n:950000
Cons ci ratio: 6.956707e-03	ci left: 2.496300e-01	ci right 2.513737e-01	k: 237976	n:950000
KS ci ratio: 2.263208e+00	ci left: 2.549572e-07	ci right 7.604913e-06	k: 2	n:950000
CARM1   950000 perm   521 sec   (1822 perm/sec)   p_kst 2.105263e-06   p_cons 2.505011e-01   p_joint 3.157895e-06

Joint ci ratio: 1.959995e+00	ci left: 6.444506e-07	ci right 9.132549e-06	k: 3	n:960000
Cons ci ratio: 6.920322e-03	ci left: 2.496376e-01	ci right 2.513722e-01	k: 240484	n:960000
KS ci ratio: 2.263208e+00	ci left: 2.523014e-07	ci right 7.525696e-06	k: 2	n:960000
CARM1   960000 perm   530 sec   (1810 perm/sec)   p_kst 2.083333e-06   p_cons 2.505042e-01   p_joint 3.125000e-06

Joint ci ratio: 1.959995e+00	ci left: 6.378068e-07	ci right 9.038399e-06	k: 3	n:970000
Cons ci ratio: 6.884767e-03	ci left: 2.496307e-01	ci right 2.513563e-01	k: 242978	n:970000
KS ci ratio: 2.263208e+00	ci left: 2.497004e-07	ci right 7.448112e-06	k: 2	n:970000
CARM1   970000 perm   539 sec   (1798 perm/sec)   p_kst 2.061856e-06   p_cons 2.504928e-01   p_joint 3.092784e-06

Joint ci ratio: 1.959995e+00	ci left: 6.312985e-07	ci right 8.946171e-06	k: 3	n:980000
Cons ci ratio: 6.849475e-03	ci left: 2.496393e-01	ci right 2.513561e-01	k: 245487	n:980000
KS ci ratio: 2.263208e+00	ci left: 2.471524e-07	ci right 7.372111e-06	k: 2	n:980000
CARM1   980000 perm   549 sec   (1786 perm/sec)   p_kst 2.040816e-06   p_cons 2.504969e-01   p_joint 3.061224e-06

Joint ci ratio: 1.959995e+00	ci left: 6.249218e-07	ci right 8.855806e-06	k: 3	n:990000
Cons ci ratio: 6.815197e-03	ci left: 2.496215e-01	ci right 2.513295e-01	k: 247970	n:990000
KS ci ratio: 2.263208e+00	ci left: 2.446559e-07	ci right 7.297645e-06	k: 2	n:990000
CARM1   990000 perm   558 sec   (1774 perm/sec)   p_kst 2.020202e-06   p_cons 2.504747e-01   p_joint 3.030303e-06

Joint ci ratio: 1.959995e+00	ci left: 6.186726e-07	ci right 8.767248e-06	k: 3	n:1000000
Cons ci ratio: 6.781988e-03	ci left: 2.495731e-01	ci right 2.512724e-01	k: 250422	n:1000000
KS ci ratio: 2.263209e+00	ci left: 2.422094e-07	ci right 7.224669e-06	k: 2	n:1000000
CARM1   1000000 perm   567 sec   (1762 perm/sec)   p_kst 2.000000e-06   p_cons 2.504220e-01   p_joint 3.000000e-06

Joint ci ratio: 1.959995e+00	ci left: 6.125471e-07	ci right 8.680444e-06	k: 3	n:1010000
Cons ci ratio: 6.748495e-03	ci left: 2.495682e-01	ci right 2.512590e-01	k: 252917	n:1010000
KS ci ratio: 2.263209e+00	ci left: 2.398113e-07	ci right 7.153138e-06	k: 2	n:1010000
CARM1   1010000 perm   577 sec   (1751 perm/sec)   p_kst 1.980198e-06   p_cons 2.504129e-01   p_joint 2.970297e-06

Joint ci ratio: 1.959995e+00	ci left: 6.065417e-07	ci right 8.595341e-06	k: 3	n:1020000
Cons ci ratio: 6.715422e-03	ci left: 2.495673e-01	ci right 2.512498e-01	k: 255416	n:1020000
KS ci ratio: 2.263209e+00	ci left: 2.374602e-07	ci right 7.083009e-06	k: 2	n:1020000
CARM1   1020000 perm   587 sec   (1739 perm/sec)   p_kst 1.960784e-06   p_cons 2.504078e-01   p_joint 2.941176e-06

Joint ci ratio: 1.959995e+00	ci left: 6.006529e-07	ci right 8.511892e-06	k: 3	n:1030000
Cons ci ratio: 6.682296e-03	ci left: 2.495965e-01	ci right 2.512709e-01	k: 257946	n:1030000
KS ci ratio: 2.263209e+00	ci left: 2.351547e-07	ci right 7.014242e-06	k: 2	n:1030000
CARM1   1030000 perm   596 sec   (1728 perm/sec)   p_kst 1.941748e-06   p_cons 2.504330e-01   p_joint 2.912621e-06

Joint ci ratio: 1.959995e+00	ci left: 5.948774e-07	ci right 8.430047e-06	k: 3	n:1040000
Cons ci ratio: 6.649382e-03	ci left: 2.496406e-01	ci right 2.513070e-01	k: 260492	n:1040000
KS ci ratio: 2.263209e+00	ci left: 2.328936e-07	ci right 6.946798e-06	k: 2	n:1040000
CARM1   1040000 perm   606 sec   (1716 perm/sec)   p_kst 1.923077e-06   p_cons 2.504731e-01   p_joint 2.884615e-06

Joint ci ratio: 1.959995e+00	ci left: 5.892119e-07	ci right 8.349761e-06	k: 3	n:1050000
Cons ci ratio: 6.617169e-03	ci left: 2.496714e-01	ci right 2.513300e-01	k: 263025	n:1050000
KS ci ratio: 2.263209e+00	ci left: 2.306756e-07	ci right 6.880638e-06	k: 2	n:1050000
CARM1   1050000 perm   616 sec   (1705 perm/sec)   p_kst 1.904762e-06   p_cons 2.505000e-01   p_joint 2.857143e-06

Joint ci ratio: 1.959995e+00	ci left: 5.836533e-07	ci right 8.270990e-06	k: 3	n:1060000
Cons ci ratio: 6.585352e-03	ci left: 2.497055e-01	ci right 2.513562e-01	k: 265562	n:1060000
KS ci ratio: 2.263209e+00	ci left: 2.284994e-07	ci right 6.815726e-06	k: 2	n:1060000
CARM1   1060000 perm   626 sec   (1695 perm/sec)   p_kst 1.886792e-06   p_cons 2.505302e-01   p_joint 2.830189e-06

Joint ci ratio: 1.959995e+00	ci left: 5.781986e-07	ci right 8.193691e-06	k: 3	n:1070000
Cons ci ratio: 6.554317e-03	ci left: 2.497203e-01	ci right 2.513633e-01	k: 268079	n:1070000
KS ci ratio: 2.263209e+00	ci left: 2.263639e-07	ci right 6.752028e-06	k: 2	n:1070000
CARM1   1070000 perm   635 sec   (1684 perm/sec)   p_kst 1.869159e-06   p_cons 2.505411e-01   p_joint 2.803738e-06

Joint ci ratio: 1.959995e+00	ci left: 5.728449e-07	ci right 8.117824e-06	k: 3	n:1080000
Cons ci ratio: 6.523957e-03	ci left: 2.497209e-01	ci right 2.513563e-01	k: 270581	n:1080000
KS ci ratio: 2.263209e+00	ci left: 2.242679e-07	ci right 6.689509e-06	k: 2	n:1080000
CARM1   1080000 perm   645 sec   (1673 perm/sec)   p_kst 1.851852e-06   p_cons 2.505380e-01   p_joint 2.777778e-06

Joint ci ratio: 1.959996e+00	ci left: 5.675895e-07	ci right 8.043349e-06	k: 3	n:1090000
Cons ci ratio: 6.494127e-03	ci left: 2.497152e-01	ci right 2.513430e-01	k: 273076	n:1090000
KS ci ratio: 2.263209e+00	ci left: 2.222104e-07	ci right 6.628138e-06	k: 2	n:1090000
CARM1   1090000 perm   656 sec   (1663 perm/sec)   p_kst 1.834862e-06   p_cons 2.505284e-01   p_joint 2.752294e-06

Joint ci ratio: 1.959996e+00	ci left: 5.624296e-07	ci right 7.970227e-06	k: 3	n:1100000
Cons ci ratio: 6.464404e-03	ci left: 2.497268e-01	ci right 2.513472e-01	k: 275590	n:1100000
KS ci ratio: 2.263209e+00	ci left: 2.201903e-07	ci right 6.567882e-06	k: 2	n:1100000
CARM1   1100000 perm   666 sec   (1652 perm/sec)   p_kst 1.818182e-06   p_cons 2.505364e-01   p_joint 2.727273e-06

Joint ci ratio: 1.959996e+00	ci left: 5.573626e-07	ci right 7.898424e-06	k: 3	n:1110000
Cons ci ratio: 6.433867e-03	ci left: 2.498093e-01	ci right 2.514226e-01	k: 278183	n:1110000
KS ci ratio: 2.263209e+00	ci left: 2.182066e-07	ci right 6.508712e-06	k: 2	n:1110000
CARM1   1110000 perm   676 sec   (1642 perm/sec)   p_kst 1.801802e-06   p_cons 2.506153e-01   p_joint 2.702703e-06

Joint ci ratio: 1.959996e+00	ci left: 5.523862e-07	ci right 7.827902e-06	k: 3	n:1120000
Cons ci ratio: 6.404154e-03	ci left: 2.498672e-01	ci right 2.514734e-01	k: 280750	n:1120000
KS ci ratio: 2.263209e+00	ci left: 2.162584e-07	ci right 6.450599e-06	k: 2	n:1120000
CARM1   1120000 perm   686 sec   (1632 perm/sec)   p_kst 1.785714e-06   p_cons 2.506696e-01   p_joint 2.678571e-06

Joint ci ratio: 1.959996e+00	ci left: 5.474978e-07	ci right 7.758629e-06	k: 3	n:1130000
Cons ci ratio: 6.375389e-03	ci left: 2.498922e-01	ci right 2.514913e-01	k: 283281	n:1130000
KS ci ratio: 2.263209e+00	ci left: 2.143446e-07	ci right 6.393514e-06	k: 2	n:1130000
CARM1   1130000 perm   697 sec   (1622 perm/sec)   p_kst 1.769912e-06   p_cons 2.506912e-01   p_joint 2.654867e-06

Joint ci ratio: 1.959996e+00	ci left: 5.426952e-07	ci right 7.690571e-06	k: 3	n:1140000
Cons ci ratio: 6.347379e-03	ci left: 2.498949e-01	ci right 2.514870e-01	k: 285787	n:1140000
KS ci ratio: 2.263209e+00	ci left: 2.124644e-07	ci right 6.337431e-06	k: 2	n:1140000
CARM1   1140000 perm   707 sec   (1612 perm/sec)   p_kst 1.754386e-06   p_cons 2.506904e-01   p_joint 2.631579e-06

Joint ci ratio: 1.959996e+00	ci left: 5.379761e-07	ci right 7.623697e-06	k: 3	n:1150000
Cons ci ratio: 6.319735e-03	ci left: 2.498976e-01	ci right 2.514828e-01	k: 288293	n:1150000
KS ci ratio: 2.263209e+00	ci left: 2.106168e-07	ci right 6.282323e-06	k: 2	n:1150000
CARM1   1150000 perm   718 sec   (1602 perm/sec)   p_kst 1.739130e-06   p_cons 2.506896e-01   p_joint 2.608696e-06

Joint ci ratio: 1.959996e+00	ci left: 5.333384e-07	ci right 7.557975e-06	k: 3	n:1160000
Cons ci ratio: 6.292030e-03	ci left: 2.499252e-01	ci right 2.515036e-01	k: 290828	n:1160000
KS ci ratio: 2.263209e+00	ci left: 2.088012e-07	ci right 6.228165e-06	k: 2	n:1160000
CARM1   1160000 perm   728 sec   (1592 perm/sec)   p_kst 1.724138e-06   p_cons 2.507138e-01   p_joint 2.586207e-06

Joint ci ratio: 1.959996e+00	ci left: 5.287799e-07	ci right 7.493377e-06	k: 3	n:1170000
Cons ci ratio: 6.265156e-03	ci left: 2.499242e-01	ci right 2.514958e-01	k: 293330	n:1170000
KS ci ratio: 2.263209e+00	ci left: 2.070165e-07	ci right 6.174933e-06	k: 2	n:1170000
CARM1   1170000 perm   739 sec   (1583 perm/sec)   p_kst 1.709402e-06   p_cons 2.507094e-01   p_joint 2.564103e-06

Joint ci ratio: 1.959996e+00	ci left: 5.242987e-07	ci right 7.429874e-06	k: 3	n:1180000
Cons ci ratio: 6.237668e-03	ci left: 2.499808e-01	ci right 2.515458e-01	k: 295900	n:1180000
KS ci ratio: 2.263209e+00	ci left: 2.052622e-07	ci right 6.122603e-06	k: 2	n:1180000
CARM1   1180000 perm   750 sec   (1573 perm/sec)   p_kst 1.694915e-06   p_cons 2.507627e-01   p_joint 2.542373e-06

Joint ci ratio: 1.959996e+00	ci left: 5.198928e-07	ci right 7.367439e-06	k: 3	n:1190000
Cons ci ratio: 6.210482e-03	ci left: 2.500398e-01	ci right 2.515984e-01	k: 298474	n:1190000
KS ci ratio: 2.263209e+00	ci left: 2.035373e-07	ci right 6.071153e-06	k: 2	n:1190000
CARM1   1190000 perm   761 sec   (1564 perm/sec)   p_kst 1.680672e-06   p_cons 2.508185e-01   p_joint 2.521008e-06

Joint ci ratio: 1.959996e+00	ci left: 5.155604e-07	ci right 7.306043e-06	k: 3	n:1200000
Cons ci ratio: 6.183827e-03	ci left: 2.500871e-01	ci right 2.516392e-01	k: 301035	n:1200000
KS ci ratio: 2.263209e+00	ci left: 2.018411e-07	ci right 6.020560e-06	k: 2	n:1200000
CARM1   1200000 perm   772 sec   (1554 perm/sec)   p_kst 1.666667e-06   p_cons 2.508625e-01   p_joint 2.500000e-06

Joint ci ratio: 1.959996e+00	ci left: 5.112996e-07	ci right 7.245663e-06	k: 3	n:1210000
Cons ci ratio: 6.158473e-03	ci left: 2.500749e-01	ci right 2.516205e-01	k: 303525	n:1210000
KS ci ratio: 2.263209e+00	ci left: 2.001730e-07	ci right 5.970803e-06	k: 2	n:1210000
CARM1   1210000 perm   783 sec   (1545 perm/sec)   p_kst 1.652893e-06   p_cons 2.508471e-01   p_joint 2.479339e-06

Joint ci ratio: 1.959996e+00	ci left: 5.071086e-07	ci right 7.186272e-06	k: 3	n:1220000
Cons ci ratio: 6.133603e-03	ci left: 2.500523e-01	ci right 2.515915e-01	k: 306002	n:1220000
KS ci ratio: 2.263209e+00	ci left: 1.985323e-07	ci right 5.921862e-06	k: 2	n:1220000
CARM1   1220000 perm   794 sec   (1536 perm/sec)   p_kst 1.639344e-06   p_cons 2.508213e-01   p_joint 2.459016e-06

Joint ci ratio: 1.959996e+00	ci left: 5.029857e-07	ci right 7.127848e-06	k: 3	n:1230000
Cons ci ratio: 6.107379e-03	ci left: 2.501316e-01	ci right 2.516647e-01	k: 308604	n:1230000
KS ci ratio: 2.263209e+00	ci left: 1.969182e-07	ci right 5.873717e-06	k: 2	n:1230000
CARM1   1230000 perm   805 sec   (1528 perm/sec)   p_kst 1.626016e-06   p_cons 2.508976e-01   p_joint 2.439024e-06

Joint ci ratio: 1.959996e+00	ci left: 4.989294e-07	ci right 7.070365e-06	k: 3	n:1240000
Cons ci ratio: 6.082546e-03	ci left: 2.501444e-01	ci right 2.516713e-01	k: 311125	n:1240000
KS ci ratio: 2.263209e+00	ci left: 1.953301e-07	ci right 5.826349e-06	k: 2	n:1240000
CARM1   1240000 perm   816 sec   (1519 perm/sec)   p_kst 1.612903e-06   p_cons 2.509073e-01   p_joint 2.419355e-06

Joint ci ratio: 1.959996e+00	ci left: 4.949380e-07	ci right 7.013802e-06	k: 3	n:1250000
Cons ci ratio: 6.057382e-03	ci left: 2.501961e-01	ci right 2.517170e-01	k: 313695	n:1250000
KS ci ratio: 2.263209e+00	ci left: 1.937675e-07	ci right 5.779738e-06	k: 2	n:1250000
CARM1   1250000 perm   828 sec   (1510 perm/sec)   p_kst 1.600000e-06   p_cons 2.509560e-01   p_joint 2.400000e-06

Joint ci ratio: 1.959996e+00	ci left: 4.910099e-07	ci right 6.958137e-06	k: 3	n:1260000
Cons ci ratio: 6.033049e-03	ci left: 2.502146e-01	ci right 2.517294e-01	k: 316224	n:1260000
KS ci ratio: 2.263209e+00	ci left: 1.922296e-07	ci right 5.733867e-06	k: 2	n:1260000
CARM1   1260000 perm   839 sec   (1502 perm/sec)   p_kst 1.587302e-06   p_cons 2.509714e-01   p_joint 2.380952e-06

Joint ci ratio: 1.959996e+00	ci left: 4.871437e-07	ci right 6.903349e-06	k: 3	n:1270000
Cons ci ratio: 6.009070e-03	ci left: 2.502288e-01	ci right 2.517377e-01	k: 318748	n:1270000
KS ci ratio: 2.263209e+00	ci left: 1.907160e-07	ci right 5.688719e-06	k: 2	n:1270000
CARM1   1270000 perm   850 sec   (1494 perm/sec)   p_kst 1.574803e-06   p_cons 2.509827e-01   p_joint 2.362205e-06

Joint ci ratio: 1.959996e+00	ci left: 4.833379e-07	ci right 6.849417e-06	k: 3	n:1280000
Cons ci ratio: 5.985152e-03	ci left: 2.502568e-01	ci right 2.517599e-01	k: 321290	n:1280000
KS ci ratio: 2.263210e+00	ci left: 1.892261e-07	ci right 5.644276e-06	k: 2	n:1280000
CARM1   1280000 perm   862 sec   (1485 perm/sec)   p_kst 1.562500e-06   p_cons 2.510078e-01   p_joint 2.343750e-06

Joint ci ratio: 1.753073e+00	ci left: 8.448575e-07	ci right 7.939197e-06	k: 4	n:1290000
Cons ci ratio: 5.962155e-03	ci left: 2.502442e-01	ci right 2.517414e-01	k: 323780	n:1290000
KS ci ratio: 2.263210e+00	ci left: 1.877592e-07	ci right 5.600522e-06	k: 2	n:1290000
CARM1   1290000 perm   873 sec   (1477 perm/sec)   p_kst 1.550388e-06   p_cons 2.509922e-01   p_joint 3.100775e-06

Joint ci ratio: 1.753073e+00	ci left: 8.383586e-07	ci right 7.878126e-06	k: 4	n:1300000
Cons ci ratio: 5.939276e-03	ci left: 2.502410e-01	ci right 2.517324e-01	k: 326282	n:1300000
KS ci ratio: 2.263210e+00	ci left: 1.863149e-07	ci right 5.557441e-06	k: 2	n:1300000
CARM1   1300000 perm   885 sec   (1469 perm/sec)   p_kst 1.538462e-06   p_cons 2.509862e-01   p_joint 3.076923e-06

Joint ci ratio: 1.753073e+00	ci left: 8.319589e-07	ci right 7.817988e-06	k: 4	n:1310000
Cons ci ratio: 5.916322e-03	ci left: 2.502592e-01	ci right 2.517449e-01	k: 328812	n:1310000
KS ci ratio: 2.263210e+00	ci left: 1.848926e-07	ci right 5.515018e-06	k: 2	n:1310000
CARM1   1310000 perm   897 sec   (1461 perm/sec)   p_kst 1.526718e-06   p_cons 2.510015e-01   p_joint 3.053435e-06

Joint ci ratio: 1.753073e+00	ci left: 8.256562e-07	ci right 7.758761e-06	k: 4	n:1320000
Cons ci ratio: 5.893916e-03	ci left: 2.502590e-01	ci right 2.517391e-01	k: 331318	n:1320000
KS ci ratio: 2.263210e+00	ci left: 1.834919e-07	ci right 5.473237e-06	k: 2	n:1320000
CARM1   1320000 perm   909 sec   (1453 perm/sec)   p_kst 1.515152e-06   p_cons 2.509985e-01   p_joint 3.030303e-06

Joint ci ratio: 1.600329e+00	ci left: 1.220668e-06	ci right 8.773160e-06	k: 5	n:1330000
Cons ci ratio: 5.871576e-03	ci left: 2.502708e-01	ci right 2.517453e-01	k: 333840	n:1330000
KS ci ratio: 2.263210e+00	ci left: 1.821123e-07	ci right 5.432085e-06	k: 2	n:1330000
CARM1   1330000 perm   920 sec   (1445 perm/sec)   p_kst 1.503759e-06   p_cons 2.510075e-01   p_joint 3.759398e-06

Joint ci ratio: 1.600329e+00	ci left: 1.211558e-06	ci right 8.707689e-06	k: 5	n:1340000
Cons ci ratio: 5.849314e-03	ci left: 2.502936e-01	ci right 2.517627e-01	k: 336377	n:1340000
KS ci ratio: 2.263210e+00	ci left: 1.807532e-07	ci right 5.391547e-06	k: 2	n:1340000
CARM1   1340000 perm   932 sec   (1437 perm/sec)   p_kst 1.492537e-06   p_cons 2.510276e-01   p_joint 3.731343e-06

Joint ci ratio: 1.600329e+00	ci left: 1.202584e-06	ci right 8.643188e-06	k: 5	n:1350000
Cons ci ratio: 5.828118e-03	ci left: 2.502636e-01	ci right 2.517271e-01	k: 338843	n:1350000
KS ci ratio: 2.263210e+00	ci left: 1.794143e-07	ci right 5.351610e-06	k: 2	n:1350000
CARM1   1350000 perm   944 sec   (1430 perm/sec)   p_kst 1.481481e-06   p_cons 2.509948e-01   p_joint 3.703704e-06

Joint ci ratio: 1.600329e+00	ci left: 1.193741e-06	ci right 8.579635e-06	k: 5	n:1360000
Cons ci ratio: 5.806764e-03	ci left: 2.502590e-01	ci right 2.517171e-01	k: 341343	n:1360000
KS ci ratio: 2.263210e+00	ci left: 1.780951e-07	ci right 5.312260e-06	k: 2	n:1360000
CARM1   1360000 perm   956 sec   (1422 perm/sec)   p_kst 1.470588e-06   p_cons 2.509875e-01   p_joint 3.676471e-06

Joint ci ratio: 1.600329e+00	ci left: 1.185028e-06	ci right 8.517010e-06	k: 5	n:1370000
Cons ci ratio: 5.785498e-03	ci left: 2.502639e-01	ci right 2.517167e-01	k: 343856	n:1370000
KS ci ratio: 2.263210e+00	ci left: 1.767951e-07	ci right 5.273485e-06	k: 2	n:1370000
CARM1   1370000 perm   969 sec   (1414 perm/sec)   p_kst 1.459854e-06   p_cons 2.509898e-01   p_joint 3.649635e-06

Joint ci ratio: 1.600329e+00	ci left: 1.176440e-06	ci right 8.455293e-06	k: 5	n:1380000
Cons ci ratio: 5.763986e-03	ci left: 2.502999e-01	ci right 2.517475e-01	k: 346412	n:1380000
KS ci ratio: 2.263210e+00	ci left: 1.755140e-07	ci right 5.235271e-06	k: 2	n:1380000
CARM1   1380000 perm   981 sec   (1407 perm/sec)   p_kst 1.449275e-06   p_cons 2.510232e-01   p_joint 3.623188e-06

Joint ci ratio: 1.600329e+00	ci left: 1.167977e-06	ci right 8.394463e-06	k: 5	n:1390000
Cons ci ratio: 5.743921e-03	ci left: 2.502564e-01	ci right 2.516986e-01	k: 348858	n:1390000
KS ci ratio: 2.263210e+00	ci left: 1.742513e-07	ci right 5.197607e-06	k: 2	n:1390000
CARM1   1390000 perm   993 sec   (1399 perm/sec)   p_kst 1.438849e-06   p_cons 2.509770e-01   p_joint 3.597122e-06

Joint ci ratio: 1.600329e+00	ci left: 1.159634e-06	ci right 8.334503e-06	k: 5	n:1400000
Cons ci ratio: 5.722367e-03	ci left: 2.503247e-01	ci right 2.517620e-01	k: 351460	n:1400000
KS ci ratio: 2.263210e+00	ci left: 1.730067e-07	ci right 5.160482e-06	k: 2	n:1400000
CARM1   1400000 perm   1006 sec   (1392 perm/sec)   p_kst 1.428571e-06   p_cons 2.510429e-01   p_joint 3.571429e-06

Joint ci ratio: 1.600329e+00	ci left: 1.151410e-06	ci right 8.275393e-06	k: 5	n:1410000
Cons ci ratio: 5.702657e-03	ci left: 2.502866e-01	ci right 2.517187e-01	k: 353913	n:1410000
KS ci ratio: 2.263210e+00	ci left: 1.717797e-07	ci right 5.123882e-06	k: 2	n:1410000
CARM1   1410000 perm   1020 sec   (1382 perm/sec)   p_kst 1.418440e-06   p_cons 2.510021e-01   p_joint 3.546099e-06

Joint ci ratio: 1.959997e+00	ci left: 4.356848e-07	ci right 6.174123e-06	k: 3	n:1420000
Cons ci ratio: 5.682382e-03	ci left: 2.502997e-01	ci right 2.517267e-01	k: 356438	n:1420000
KS ci ratio: 2.263210e+00	ci left: 1.705700e-07	ci right 5.087799e-06	k: 2	n:1420000
CARM1   1420000 perm   1034 sec   (1374 perm/sec)   p_kst 1.408451e-06   p_cons 2.510127e-01   p_joint 2.112676e-06

Joint ci ratio: 1.959997e+00	ci left: 4.326381e-07	ci right 6.130948e-06	k: 3	n:1430000
Cons ci ratio: 5.662880e-03	ci left: 2.502755e-01	ci right 2.516975e-01	k: 358910	n:1430000
KS ci ratio: 2.263210e+00	ci left: 1.693772e-07	ci right 5.052220e-06	k: 2	n:1430000
CARM1   1430000 perm   1048 sec   (1364 perm/sec)   p_kst 1.398601e-06   p_cons 2.509860e-01   p_joint 2.097902e-06

Joint ci ratio: 1.959997e+00	ci left: 4.296336e-07	ci right 6.088372e-06	k: 3	n:1440000
Cons ci ratio: 5.643380e-03	ci left: 2.502649e-01	ci right 2.516819e-01	k: 361401	n:1440000
KS ci ratio: 2.263210e+00	ci left: 1.682009e-07	ci right 5.017135e-06	k: 2	n:1440000
CARM1   1440000 perm   1062 sec   (1356 perm/sec)   p_kst 1.388889e-06   p_cons 2.509729e-01   p_joint 2.083333e-06

Joint ci ratio: 1.959997e+00	ci left: 4.266706e-07	ci right 6.046383e-06	k: 3	n:1450000
Cons ci ratio: 5.623946e-03	ci left: 2.502634e-01	ci right 2.516755e-01	k: 363905	n:1450000
KS ci ratio: 2.263210e+00	ci left: 1.670409e-07	ci right 4.982534e-06	k: 2	n:1450000
CARM1   1450000 perm   1075 sec   (1349 perm/sec)   p_kst 1.379310e-06   p_cons 2.509690e-01   p_joint 2.068966e-06

Joint ci ratio: 1.959997e+00	ci left: 4.237482e-07	ci right 6.004970e-06	k: 3	n:1460000
Cons ci ratio: 5.604445e-03	ci left: 2.502797e-01	ci right 2.516870e-01	k: 366435	n:1460000
KS ci ratio: 2.263210e+00	ci left: 1.658968e-07	ci right 4.948407e-06	k: 2	n:1460000
CARM1   1460000 perm   1088 sec   (1342 perm/sec)   p_kst 1.369863e-06   p_cons 2.509829e-01   p_joint 2.054795e-06

Joint ci ratio: 1.959997e+00	ci left: 4.208656e-07	ci right 5.964120e-06	k: 3	n:1470000
Cons ci ratio: 5.585278e-03	ci left: 2.502870e-01	ci right 2.516895e-01	k: 368952	n:1470000
KS ci ratio: 2.263210e+00	ci left: 1.647683e-07	ci right 4.914745e-06	k: 2	n:1470000
CARM1   1470000 perm   1100 sec   (1336 perm/sec)   p_kst 1.360544e-06   p_cons 2.509878e-01   p_joint 2.040816e-06

Joint ci ratio: 1.959997e+00	ci left: 4.180219e-07	ci right 5.923822e-06	k: 3	n:1480000
Cons ci ratio: 5.567045e-03	ci left: 2.502442e-01	ci right 2.516419e-01	k: 371395	n:1480000
KS ci ratio: 2.263210e+00	ci left: 1.636550e-07	ci right 4.881537e-06	k: 2	n:1480000
CARM1   1480000 perm   1113 sec   (1329 perm/sec)   p_kst 1.351351e-06   p_cons 2.509426e-01   p_joint 2.027027e-06

Joint ci ratio: 1.959997e+00	ci left: 4.152164e-07	ci right 5.884065e-06	k: 3	n:1490000
Cons ci ratio: 5.548654e-03	ci left: 2.502248e-01	ci right 2.516177e-01	k: 373872	n:1490000
KS ci ratio: 2.263210e+00	ci left: 1.625566e-07	ci right 4.848775e-06	k: 2	n:1490000
CARM1   1490000 perm   1126 sec   (1323 perm/sec)   p_kst 1.342282e-06   p_cons 2.509208e-01   p_joint 2.013423e-06

Joint ci ratio: 1.959997e+00	ci left: 4.124483e-07	ci right 5.844837e-06	k: 3	n:1500000
Cons ci ratio: 5.530032e-03	ci left: 2.502337e-01	ci right 2.516220e-01	k: 376391	n:1500000
KS ci ratio: 2.263210e+00	ci left: 1.614729e-07	ci right 4.816450e-06	k: 2	n:1500000
CARM1   1500000 perm   1139 sec   (1317 perm/sec)   p_kst 1.333333e-06   p_cons 2.509273e-01   p_joint 2.000000e-06

Joint ci ratio: 1.959997e+00	ci left: 4.097168e-07	ci right 5.806130e-06	k: 3	n:1510000
Cons ci ratio: 5.512702e-03	ci left: 2.501670e-01	ci right 2.515505e-01	k: 378796	n:1510000
KS ci ratio: 2.263210e+00	ci left: 1.604035e-07	ci right 4.784553e-06	k: 2	n:1510000
CARM1   1510000 perm   1152 sec   (1311 perm/sec)   p_kst 1.324503e-06   p_cons 2.508583e-01   p_joint 1.986755e-06

Joint ci ratio: 1.959997e+00	ci left: 4.070213e-07	ci right 5.767932e-06	k: 3	n:1520000
Cons ci ratio: 5.494083e-03	ci left: 2.502004e-01	ci right 2.515795e-01	k: 381352	n:1520000
KS ci ratio: 2.263210e+00	ci left: 1.593482e-07	ci right 4.753076e-06	k: 2	n:1520000
CARM1   1520000 perm   1165 sec   (1304 perm/sec)   p_kst 1.315789e-06   p_cons 2.508895e-01   p_joint 1.973684e-06

Joint ci ratio: 1.959997e+00	ci left: 4.043610e-07	ci right 5.730233e-06	k: 3	n:1530000
Cons ci ratio: 5.475907e-03	ci left: 2.502158e-01	ci right 2.515904e-01	k: 383881	n:1530000
KS ci ratio: 2.263210e+00	ci left: 1.583068e-07	ci right 4.722010e-06	k: 2	n:1530000
CARM1   1530000 perm   1179 sec   (1298 perm/sec)   p_kst 1.307190e-06   p_cons 2.509026e-01   p_joint 1.960784e-06

Joint ci ratio: 1.959997e+00	ci left: 4.017353e-07	ci right 5.693024e-06	k: 3	n:1540000
Cons ci ratio: 5.457459e-03	ci left: 2.502621e-01	ci right 2.516323e-01	k: 386458	n:1540000
KS ci ratio: 2.263210e+00	ci left: 1.572788e-07	ci right 4.691348e-06	k: 2	n:1540000
CARM1   1540000 perm   1192 sec   (1292 perm/sec)   p_kst 1.298701e-06   p_cons 2.509468e-01   p_joint 1.948052e-06

Joint ci ratio: 1.959997e+00	ci left: 3.991435e-07	ci right 5.656295e-06	k: 3	n:1550000
Cons ci ratio: 5.439839e-03	ci left: 2.502634e-01	ci right 2.516291e-01	k: 388966	n:1550000
KS ci ratio: 2.263210e+00	ci left: 1.562641e-07	ci right 4.661081e-06	k: 2	n:1550000
CARM1   1550000 perm   1206 sec   (1286 perm/sec)   p_kst 1.290323e-06   p_cons 2.509458e-01   p_joint 1.935484e-06

Joint ci ratio: 1.959997e+00	ci left: 3.965849e-07	ci right 5.620036e-06	k: 3	n:1560000
Cons ci ratio: 5.422371e-03	ci left: 2.502659e-01	ci right 2.516273e-01	k: 391476	n:1560000
KS ci ratio: 2.263210e+00	ci left: 1.552624e-07	ci right 4.631202e-06	k: 2	n:1560000
CARM1   1560000 perm   1219 sec   (1279 perm/sec)   p_kst 1.282051e-06   p_cons 2.509462e-01   p_joint 1.923077e-06

Joint ci ratio: 1.959997e+00	ci left: 3.940588e-07	ci right 5.584240e-06	k: 3	n:1570000
Cons ci ratio: 5.404594e-03	ci left: 2.503015e-01	ci right 2.516586e-01	k: 394038	n:1570000
KS ci ratio: 2.263210e+00	ci left: 1.542735e-07	ci right 4.601704e-06	k: 2	n:1570000
CARM1   1570000 perm   1233 sec   (1273 perm/sec)   p_kst 1.273885e-06   p_cons 2.509796e-01   p_joint 1.910828e-06

Joint ci ratio: 1.959997e+00	ci left: 3.915648e-07	ci right 5.548897e-06	k: 3	n:1580000
Cons ci ratio: 5.387280e-03	ci left: 2.503165e-01	ci right 2.516692e-01	k: 396568	n:1580000
KS ci ratio: 2.263210e+00	ci left: 1.532970e-07	ci right 4.572580e-06	k: 2	n:1580000
CARM1   1580000 perm   1247 sec   (1267 perm/sec)   p_kst 1.265823e-06   p_cons 2.509924e-01   p_joint 1.898734e-06

Joint ci ratio: 1.959997e+00	ci left: 3.891021e-07	ci right 5.513998e-06	k: 3	n:1590000
Cons ci ratio: 5.370105e-03	ci left: 2.503331e-01	ci right 2.516816e-01	k: 399101	n:1590000
KS ci ratio: 2.263210e+00	ci left: 1.523329e-07	ci right 4.543821e-06	k: 2	n:1590000
CARM1   1590000 perm   1261 sec   (1261 perm/sec)   p_kst 1.257862e-06   p_cons 2.510069e-01   p_joint 1.886792e-06

Joint ci ratio: 1.959997e+00	ci left: 3.866702e-07	ci right 5.479536e-06	k: 3	n:1600000
Cons ci ratio: 5.353529e-03	ci left: 2.503189e-01	ci right 2.516632e-01	k: 401585	n:1600000
KS ci ratio: 2.263210e+00	ci left: 1.513808e-07	ci right 4.515422e-06	k: 2	n:1600000
CARM1   1600000 perm   1274 sec   (1256 perm/sec)   p_kst 1.250000e-06   p_cons 2.509906e-01   p_joint 1.875000e-06

Joint ci ratio: 1.959997e+00	ci left: 3.842686e-07	ci right 5.445501e-06	k: 3	n:1610000
Cons ci ratio: 5.337379e-03	ci left: 2.502857e-01	ci right 2.516257e-01	k: 404038	n:1610000
KS ci ratio: 2.263210e+00	ci left: 1.504406e-07	ci right 4.487376e-06	k: 2	n:1610000
CARM1   1610000 perm   1288 sec   (1250 perm/sec)   p_kst 1.242236e-06   p_cons 2.509553e-01   p_joint 1.863354e-06

Joint ci ratio: 1.959997e+00	ci left: 3.818965e-07	ci right 5.411887e-06	k: 3	n:1620000
Cons ci ratio: 5.321340e-03	ci left: 2.502554e-01	ci right 2.515912e-01	k: 406495	n:1620000
KS ci ratio: 2.263210e+00	ci left: 1.495119e-07	ci right 4.459677e-06	k: 2	n:1620000
CARM1   1620000 perm   1302 sec   (1244 perm/sec)   p_kst 1.234568e-06   p_cons 2.509228e-01   p_joint 1.851852e-06

Joint ci ratio: 1.959997e+00	ci left: 3.795536e-07	ci right 5.378686e-06	k: 3	n:1630000
Cons ci ratio: 5.304604e-03	ci left: 2.502849e-01	ci right 2.516166e-01	k: 409049	n:1630000
KS ci ratio: 2.263210e+00	ci left: 1.485947e-07	ci right 4.432317e-06	k: 2	n:1630000
CARM1   1630000 perm   1316 sec   (1238 perm/sec)   p_kst 1.226994e-06   p_cons 2.509503e-01   p_joint 1.840491e-06

Joint ci ratio: 1.959997e+00	ci left: 3.772393e-07	ci right 5.345889e-06	k: 3	n:1640000
Cons ci ratio: 5.288806e-03	ci left: 2.502586e-01	ci right 2.515862e-01	k: 411512	n:1640000
KS ci ratio: 2.263210e+00	ci left: 1.476886e-07	ci right 4.405290e-06	k: 2	n:1640000
CARM1   1640000 perm   1331 sec   (1232 perm/sec)   p_kst 1.219512e-06   p_cons 2.509220e-01   p_joint 1.829268e-06

Joint ci ratio: 1.959997e+00	ci left: 3.749530e-07	ci right 5.313490e-06	k: 3	n:1650000
Cons ci ratio: 5.272858e-03	ci left: 2.502532e-01	ci right 2.515768e-01	k: 414009	n:1650000
KS ci ratio: 2.263210e+00	ci left: 1.467935e-07	ci right 4.378592e-06	k: 2	n:1650000
CARM1   1650000 perm   1345 sec   (1227 perm/sec)   p_kst 1.212121e-06   p_cons 2.509145e-01   p_joint 1.818182e-06

Joint ci ratio: 1.959997e+00	ci left: 3.726942e-07	ci right 5.281481e-06	k: 3	n:1660000
Cons ci ratio: 5.256642e-03	ci left: 2.502773e-01	ci right 2.515970e-01	k: 416555	n:1660000
KS ci ratio: 2.263210e+00	ci left: 1.459092e-07	ci right 4.352215e-06	k: 2	n:1660000
CARM1   1660000 perm   1359 sec   (1221 perm/sec)   p_kst 1.204819e-06   p_cons 2.509367e-01   p_joint 1.807229e-06

Joint ci ratio: 1.959997e+00	ci left: 3.704625e-07	ci right 5.249855e-06	k: 3	n:1670000
Cons ci ratio: 5.241225e-03	ci left: 2.502546e-01	ci right 2.515702e-01	k: 419023	n:1670000
KS ci ratio: 2.263210e+00	ci left: 1.450355e-07	ci right 4.326154e-06	k: 2	n:1670000
CARM1   1670000 perm   1373 sec   (1216 perm/sec)   p_kst 1.197605e-06   p_cons 2.509120e-01   p_joint 1.796407e-06

Joint ci ratio: 1.959997e+00	ci left: 3.682574e-07	ci right 5.218606e-06	k: 3	n:1680000
Cons ci ratio: 5.225133e-03	ci left: 2.502904e-01	ci right 2.516022e-01	k: 421589	n:1680000
KS ci ratio: 2.263210e+00	ci left: 1.441722e-07	ci right 4.300403e-06	k: 2	n:1680000
CARM1   1680000 perm   1388 sec   (1211 perm/sec)   p_kst 1.190476e-06   p_cons 2.509458e-01   p_joint 1.785714e-06

Joint ci ratio: 1.959997e+00	ci left: 3.660783e-07	ci right 5.187727e-06	k: 3	n:1690000
Cons ci ratio: 5.209613e-03	ci left: 2.502950e-01	ci right 2.516029e-01	k: 424103	n:1690000
KS ci ratio: 2.263210e+00	ci left: 1.433191e-07	ci right 4.274957e-06	k: 2	n:1690000
CARM1   1690000 perm   1402 sec   (1205 perm/sec)   p_kst 1.183432e-06   p_cons 2.509485e-01   p_joint 1.775148e-06

Joint ci ratio: 1.959997e+00	ci left: 3.639249e-07	ci right 5.157211e-06	k: 3	n:1700000
Cons ci ratio: 5.194029e-03	ci left: 2.503143e-01	ci right 2.516184e-01	k: 426642	n:1700000
KS ci ratio: 2.263210e+00	ci left: 1.424761e-07	ci right 4.249810e-06	k: 2	n:1700000
CARM1   1700000 perm   1417 sec   (1200 perm/sec)   p_kst 1.176471e-06   p_cons 2.509659e-01   p_joint 1.764706e-06

Joint ci ratio: 1.959997e+00	ci left: 3.617967e-07	ci right 5.127052e-06	k: 3	n:1710000
Cons ci ratio: 5.178961e-03	ci left: 2.503059e-01	ci right 2.516061e-01	k: 429134	n:1710000
KS ci ratio: 2.263210e+00	ci left: 1.416429e-07	ci right 4.224957e-06	k: 2	n:1710000
CARM1   1710000 perm   1432 sec   (1194 perm/sec)   p_kst 1.169591e-06   p_cons 2.509556e-01   p_joint 1.754386e-06

Joint ci ratio: 1.959997e+00	ci left: 3.596932e-07	ci right 5.097243e-06	k: 3	n:1720000
Cons ci ratio: 5.163522e-03	ci left: 2.503341e-01	ci right 2.516307e-01	k: 431689	n:1720000
KS ci ratio: 2.263210e+00	ci left: 1.408194e-07	ci right 4.200393e-06	k: 2	n:1720000
CARM1   1720000 perm   1446 sec   (1189 perm/sec)   p_kst 1.162791e-06   p_cons 2.509820e-01   p_joint 1.744186e-06

Joint ci ratio: 1.959997e+00	ci left: 3.576141e-07	ci right 5.067779e-06	k: 3	n:1730000
Cons ci ratio: 5.148306e-03	ci left: 2.503558e-01	ci right 2.516485e-01	k: 434233	n:1730000
KS ci ratio: 2.263210e+00	ci left: 1.400054e-07	ci right 4.176114e-06	k: 2	n:1730000
CARM1   1730000 perm   1461 sec   (1184 perm/sec)   p_kst 1.156069e-06   p_cons 2.510017e-01   p_joint 1.734104e-06

Joint ci ratio: 1.959997e+00	ci left: 3.555588e-07	ci right 5.038654e-06	k: 3	n:1740000
Cons ci ratio: 5.133750e-03	ci left: 2.503387e-01	ci right 2.516277e-01	k: 436710	n:1740000
KS ci ratio: 2.263210e+00	ci left: 1.392008e-07	ci right 4.152113e-06	k: 2	n:1740000
CARM1   1740000 perm   1475 sec   (1180 perm/sec)   p_kst 1.149425e-06   p_cons 2.509828e-01   p_joint 1.724138e-06

Joint ci ratio: 1.959997e+00	ci left: 3.535271e-07	ci right 5.009862e-06	k: 3	n:1750000
Cons ci ratio: 5.118671e-03	ci left: 2.503691e-01	ci right 2.516545e-01	k: 439270	n:1750000
KS ci ratio: 2.263210e+00	ci left: 1.384053e-07	ci right 4.128387e-06	k: 2	n:1750000
CARM1   1750000 perm   1490 sec   (1175 perm/sec)   p_kst 1.142857e-06   p_cons 2.510114e-01   p_joint 1.714286e-06

Joint ci ratio: 1.959997e+00	ci left: 3.515184e-07	ci right 4.981397e-06	k: 3	n:1760000
Cons ci ratio: 5.103461e-03	ci left: 2.504186e-01	ci right 2.517004e-01	k: 441864	n:1760000
KS ci ratio: 2.263210e+00	ci left: 1.376189e-07	ci right 4.104930e-06	k: 2	n:1760000
CARM1   1760000 perm   1505 sec   (1169 perm/sec)   p_kst 1.136364e-06   p_cons 2.510591e-01   p_joint 1.704545e-06

Joint ci ratio: 1.959997e+00	ci left: 3.495324e-07	ci right 4.953254e-06	k: 3	n:1770000
Cons ci ratio: 5.088930e-03	ci left: 2.504274e-01	ci right 2.517056e-01	k: 444387	n:1770000
KS ci ratio: 2.263210e+00	ci left: 1.368414e-07	ci right 4.081738e-06	k: 2	n:1770000
CARM1   1770000 perm   1520 sec   (1164 perm/sec)   p_kst 1.129944e-06   p_cons 2.510661e-01   p_joint 1.694915e-06

Joint ci ratio: 1.959997e+00	ci left: 3.475687e-07	ci right 4.925426e-06	k: 3	n:1780000
Cons ci ratio: 5.075295e-03	ci left: 2.503789e-01	ci right 2.516534e-01	k: 446808	n:1780000
KS ci ratio: 2.263211e+00	ci left: 1.360727e-07	ci right 4.058807e-06	k: 2	n:1780000
CARM1   1780000 perm   1536 sec   (1159 perm/sec)   p_kst 1.123596e-06   p_cons 2.510157e-01   p_joint 1.685393e-06

Joint ci ratio: 1.959997e+00	ci left: 3.456270e-07	ci right 4.897910e-06	k: 3	n:1790000
Cons ci ratio: 5.060934e-03	ci left: 2.503928e-01	ci right 2.516638e-01	k: 449340	n:1790000
KS ci ratio: 2.263211e+00	ci left: 1.353125e-07	ci right 4.036132e-06	k: 2	n:1790000
CARM1   1790000 perm   1551 sec   (1154 perm/sec)   p_kst 1.117318e-06   p_cons 2.510279e-01   p_joint 1.675978e-06

Joint ci ratio: 1.959997e+00	ci left: 3.437069e-07	ci right 4.870699e-06	k: 3	n:1800000
Cons ci ratio: 5.046702e-03	ci left: 2.504061e-01	ci right 2.516736e-01	k: 451871	n:1800000
KS ci ratio: 2.263211e+00	ci left: 1.345607e-07	ci right 4.013710e-06	k: 2	n:1800000
CARM1   1800000 perm   1566 sec   (1150 perm/sec)   p_kst 1.111111e-06   p_cons 2.510394e-01   p_joint 1.666667e-06

Joint ci ratio: 1.959997e+00	ci left: 3.418079e-07	ci right 4.843790e-06	k: 3	n:1810000
Cons ci ratio: 5.032574e-03	ci left: 2.504203e-01	ci right 2.516843e-01	k: 454404	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
CARM1   1810000 perm   1581 sec   (1145 perm/sec)   p_kst 1.104972e-06   p_cons 2.510519e-01   p_joint 1.657459e-06

Joint ci ratio: 1.959997e+00	ci left: 3.399299e-07	ci right 4.817175e-06	k: 3	n:1820000
Cons ci ratio: 5.019041e-03	ci left: 2.503987e-01	ci right 2.516592e-01	k: 456872	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
CARM1   1820000 perm   1596 sec   (1141 perm/sec)   p_kst 1.098901e-06   p_cons 2.510286e-01   p_joint 1.648352e-06

Joint ci ratio: 1.959997e+00	ci left: 3.380723e-07	ci right 4.790852e-06	k: 3	n:1830000
Cons ci ratio: 5.004947e-03	ci left: 2.504276e-01	ci right 2.516847e-01	k: 459432	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
CARM1   1830000 perm   1613 sec   (1135 perm/sec)   p_kst 1.092896e-06   p_cons 2.510557e-01   p_joint 1.639344e-06

Joint ci ratio: 1.959997e+00	ci left: 3.362350e-07	ci right 4.764815e-06	k: 3	n:1840000
Cons ci ratio: 4.991109e-03	ci left: 2.504458e-01	ci right 2.516995e-01	k: 461973	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
CARM1   1840000 perm   1629 sec   (1130 perm/sec)   p_kst 1.086957e-06   p_cons 2.510723e-01   p_joint 1.630435e-06

Joint ci ratio: 1.959997e+00	ci left: 3.344175e-07	ci right 4.739059e-06	k: 3	n:1850000
Cons ci ratio: 4.977592e-03	ci left: 2.504482e-01	ci right 2.516985e-01	k: 464485	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
CARM1   1850000 perm   1644 sec   (1125 perm/sec)   p_kst 1.081081e-06   p_cons 2.510730e-01   p_joint 1.621622e-06

Joint ci ratio: 1.959997e+00	ci left: 3.326195e-07	ci right 4.713580e-06	k: 3	n:1860000
Cons ci ratio: 4.964106e-03	ci left: 2.504565e-01	ci right 2.517034e-01	k: 467008	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
CARM1   1860000 perm   1660 sec   (1121 perm/sec)   p_kst 1.075269e-06   p_cons 2.510796e-01   p_joint 1.612903e-06

Joint ci ratio: 1.959997e+00	ci left: 3.308408e-07	ci right 4.688374e-06	k: 3	n:1870000
Cons ci ratio: 4.950878e-03	ci left: 2.504535e-01	ci right 2.516970e-01	k: 469510	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
CARM1   1870000 perm   1675 sec   (1116 perm/sec)   p_kst 1.069519e-06   p_cons 2.510749e-01   p_joint 1.604278e-06

Joint ci ratio: 1.959997e+00	ci left: 3.290810e-07	ci right 4.663436e-06	k: 3	n:1880000
Cons ci ratio: 4.938124e-03	ci left: 2.504223e-01	ci right 2.516625e-01	k: 471959	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
CARM1   1880000 perm   1691 sec   (1112 perm/sec)   p_kst 1.063830e-06   p_cons 2.510420e-01   p_joint 1.595745e-06

Joint ci ratio: 1.959997e+00	ci left: 3.273399e-07	ci right 4.638762e-06	k: 3	n:1890000
Cons ci ratio: 4.925108e-03	ci left: 2.504190e-01	ci right 2.516559e-01	k: 474460	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
CARM1   1890000 perm   1707 sec   (1107 perm/sec)   p_kst 1.058201e-06   p_cons 2.510370e-01   p_joint 1.587302e-06

Joint ci ratio: 1.959997e+00	ci left: 3.256170e-07	ci right 4.614347e-06	k: 3	n:1900000
Cons ci ratio: 4.912697e-03	ci left: 2.503773e-01	ci right 2.516108e-01	k: 476888	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
CARM1   1900000 perm   1723 sec   (1103 perm/sec)   p_kst 1.052632e-06   p_cons 2.509937e-01   p_joint 1.578947e-06

Joint ci ratio: 1.959997e+00	ci left: 3.239122e-07	ci right 4.590188e-06	k: 3	n:1910000
Cons ci ratio: 4.899730e-03	ci left: 2.503857e-01	ci right 2.516161e-01	k: 479411	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
CARM1   1910000 perm   1739 sec   (1098 perm/sec)   p_kst 1.047120e-06   p_cons 2.510005e-01   p_joint 1.570681e-06

Joint ci ratio: 1.959997e+00	ci left: 3.222252e-07	ci right 4.566281e-06	k: 3	n:1920000
Cons ci ratio: 4.886825e-03	ci left: 2.503972e-01	ci right 2.516244e-01	k: 481940	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
CARM1   1920000 perm   1755 sec   (1094 perm/sec)   p_kst 1.041667e-06   p_cons 2.510104e-01   p_joint 1.562500e-06

Joint ci ratio: 1.959997e+00	ci left: 3.205556e-07	ci right 4.542622e-06	k: 3	n:1930000
Cons ci ratio: 4.874425e-03	ci left: 2.503775e-01	ci right 2.516015e-01	k: 484409	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
CARM1   1930000 perm   1773 sec   (1089 perm/sec)   p_kst 1.036269e-06   p_cons 2.509891e-01   p_joint 1.554404e-06

Joint ci ratio: 1.959997e+00	ci left: 3.189033e-07	ci right 4.519206e-06	k: 3	n:1940000
Cons ci ratio: 4.861985e-03	ci left: 2.503683e-01	ci right 2.515891e-01	k: 486898	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
CARM1   1940000 perm   1789 sec   (1084 perm/sec)   p_kst 1.030928e-06   p_cons 2.509784e-01   p_joint 1.546392e-06

Joint ci ratio: 1.959997e+00	ci left: 3.172679e-07	ci right 4.496031e-06	k: 3	n:1950000
Cons ci ratio: 4.849614e-03	ci left: 2.503613e-01	ci right 2.515789e-01	k: 489391	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
CARM1   1950000 perm   1806 sec   (1080 perm/sec)   p_kst 1.025641e-06   p_cons 2.509697e-01   p_joint 1.538462e-06

Joint ci ratio: 1.959998e+00	ci left: 3.156492e-07	ci right 4.473092e-06	k: 3	n:1960000
Cons ci ratio: 4.837303e-03	ci left: 2.503569e-01	ci right 2.515714e-01	k: 491889	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
CARM1   1960000 perm   1822 sec   (1076 perm/sec)   p_kst 1.020408e-06   p_cons 2.509638e-01   p_joint 1.530612e-06

Joint ci ratio: 1.959998e+00	ci left: 3.140469e-07	ci right 4.450386e-06	k: 3	n:1970000
Cons ci ratio: 4.824565e-03	ci left: 2.503931e-01	ci right 2.516046e-01	k: 494467	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
CARM1   1970000 perm   1839 sec   (1071 perm/sec)   p_kst 1.015228e-06   p_cons 2.509985e-01   p_joint 1.522843e-06

Joint ci ratio: 1.959998e+00	ci left: 3.124608e-07	ci right 4.427909e-06	k: 3	n:1980000
Cons ci ratio: 4.812056e-03	ci left: 2.504189e-01	ci right 2.516273e-01	k: 497025	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
CARM1   1980000 perm   1856 sec   (1067 perm/sec)   p_kst 1.010101e-06   p_cons 2.510227e-01   p_joint 1.515152e-06

Joint ci ratio: 1.959998e+00	ci left: 3.108906e-07	ci right 4.405658e-06	k: 3	n:1990000
Cons ci ratio: 4.799996e-03	ci left: 2.504168e-01	ci right 2.516221e-01	k: 499528	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
CARM1   1990000 perm   1873 sec   (1063 perm/sec)   p_kst 1.005025e-06   p_cons 2.510191e-01   p_joint 1.507538e-06

Joint ci ratio: 1.753075e+00	ci left: 5.449329e-07	ci right 5.120786e-06	k: 4	n:2000000
Cons ci ratio: 4.787970e-03	ci left: 2.504192e-01	ci right 2.516215e-01	k: 502040	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
CARM1   2000000 perm   1889 sec   (1059 perm/sec)   p_kst 1.000000e-06   p_cons 2.510200e-01   p_joint 2.000000e-06

Joint ci ratio: 1.753075e+00	ci left: 5.422218e-07	ci right 5.095310e-06	k: 4	n:2010000
Cons ci ratio: 4.775951e-03	ci left: 2.504280e-01	ci right 2.516274e-01	k: 504565	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
CARM1   2010000 perm   1906 sec   (1055 perm/sec)   p_kst 9.950249e-07   p_cons 2.510274e-01   p_joint 1.990050e-06

Joint ci ratio: 1.753075e+00	ci left: 5.395376e-07	ci right 5.070086e-06	k: 4	n:2020000
Cons ci ratio: 4.764292e-03	ci left: 2.504155e-01	ci right 2.516119e-01	k: 507047	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
CARM1   2020000 perm   1922 sec   (1051 perm/sec)   p_kst 9.900990e-07   p_cons 2.510134e-01   p_joint 1.980198e-06

Joint ci ratio: 1.753075e+00	ci left: 5.368797e-07	ci right 5.045110e-06	k: 4	n:2030000
Cons ci ratio: 4.752276e-03	ci left: 2.504381e-01	ci right 2.516316e-01	k: 509600	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
CARM1   2030000 perm   1939 sec   (1047 perm/sec)   p_kst 9.852217e-07   p_cons 2.510345e-01   p_joint 1.970443e-06

Joint ci ratio: 1.753075e+00	ci left: 5.342480e-07	ci right 5.020379e-06	k: 4	n:2040000
Cons ci ratio: 4.740474e-03	ci left: 2.504507e-01	ci right 2.516412e-01	k: 512133	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
CARM1   2040000 perm   1956 sec   (1043 perm/sec)   p_kst 9.803922e-07   p_cons 2.510456e-01   p_joint 1.960784e-06

Joint ci ratio: 1.753075e+00	ci left: 5.316419e-07	ci right 4.995889e-06	k: 4	n:2050000
Cons ci ratio: 4.729066e-03	ci left: 2.504387e-01	ci right 2.516264e-01	k: 514616	n:2050000
KS ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
CARM1   2050000 perm   1973 sec   (1039 perm/sec)   p_kst 9.756098e-07   p_cons 2.510322e-01   p_joint 1.951220e-06

Joint ci ratio: 1.753075e+00	ci left: 5.290611e-07	ci right 4.971637e-06	k: 4	n:2060000
Cons ci ratio: 4.717083e-03	ci left: 2.504793e-01	ci right 2.516641e-01	k: 517207	n:2060000
KS ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
CARM1   2060000 perm   1990 sec   (1035 perm/sec)   p_kst 9.708738e-07   p_cons 2.510714e-01   p_joint 1.941748e-06

Joint ci ratio: 1.753075e+00	ci left: 5.265053e-07	ci right 4.947620e-06	k: 4	n:2070000
Cons ci ratio: 4.705794e-03	ci left: 2.504712e-01	ci right 2.516531e-01	k: 519698	n:2070000
KS ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
CARM1   2070000 perm   2008 sec   (1031 perm/sec)   p_kst 9.661836e-07   p_cons 2.510618e-01   p_joint 1.932367e-06

Joint ci ratio: 1.753075e+00	ci left: 5.239740e-07	ci right 4.923833e-06	k: 4	n:2080000
Cons ci ratio: 4.694904e-03	ci left: 2.504378e-01	ci right 2.516168e-01	k: 522136	n:2080000
KS ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
CARM1   2080000 perm   2025 sec   (1027 perm/sec)   p_kst 9.615385e-07   p_cons 2.510269e-01   p_joint 1.923077e-06

Joint ci ratio: 1.753075e+00	ci left: 5.214669e-07	ci right 4.900274e-06	k: 4	n:2090000
Cons ci ratio: 4.683613e-03	ci left: 2.504429e-01	ci right 2.516191e-01	k: 524654	n:2090000
KS ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
CARM1   2090000 perm   2043 sec   (1023 perm/sec)   p_kst 9.569378e-07   p_cons 2.510306e-01   p_joint 1.913876e-06

Joint ci ratio: 1.753075e+00	ci left: 5.189837e-07	ci right 4.876940e-06	k: 4	n:2100000
Cons ci ratio: 4.672421e-03	ci left: 2.504465e-01	ci right 2.516199e-01	k: 527169	n:2100000
KS ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
CARM1   2100000 perm   2060 sec   (1019 perm/sec)   p_kst 9.523810e-07   p_cons 2.510329e-01   p_joint 1.904762e-06

Joint ci ratio: 1.753075e+00	ci left: 5.165241e-07	ci right 4.853826e-06	k: 4	n:2110000
Cons ci ratio: 4.661349e-03	ci left: 2.504468e-01	ci right 2.516174e-01	k: 529677	n:2110000
KS ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
CARM1   2110000 perm   2078 sec   (1016 perm/sec)   p_kst 9.478673e-07   p_cons 2.510318e-01   p_joint 1.895735e-06

Joint ci ratio: 1.753075e+00	ci left: 5.140877e-07	ci right 4.830931e-06	k: 4	n:2120000
Cons ci ratio: 4.650543e-03	ci left: 2.504320e-01	ci right 2.515998e-01	k: 532153	n:2120000
KS ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
CARM1   2120000 perm   2095 sec   (1012 perm/sec)   p_kst 9.433962e-07   p_cons 2.510156e-01   p_joint 1.886792e-06

Joint ci ratio: 1.753075e+00	ci left: 5.116741e-07	ci right 4.808251e-06	k: 4	n:2130000
Cons ci ratio: 4.639683e-03	ci left: 2.504277e-01	ci right 2.515927e-01	k: 534651	n:2130000
KS ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
CARM1   2130000 perm   2112 sec   (1008 perm/sec)   p_kst 9.389671e-07   p_cons 2.510099e-01   p_joint 1.877934e-06

Joint ci ratio: 1.753075e+00	ci left: 5.092831e-07	ci right 4.785782e-06	k: 4	n:2140000
Cons ci ratio: 4.628388e-03	ci left: 2.504649e-01	ci right 2.516273e-01	k: 537238	n:2140000
KS ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
CARM1   2140000 perm   2130 sec   (1005 perm/sec)   p_kst 9.345794e-07   p_cons 2.510458e-01   p_joint 1.869159e-06

Joint ci ratio: 1.753075e+00	ci left: 5.069144e-07	ci right 4.763523e-06	k: 4	n:2150000
Cons ci ratio: 4.617169e-03	ci left: 2.505023e-01	ci right 2.516621e-01	k: 539826	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
CARM1   2150000 perm   2148 sec   (1001 perm/sec)   p_kst 9.302326e-07   p_cons 2.510819e-01   p_joint 1.860465e-06

Joint ci ratio: 1.753075e+00	ci left: 5.045675e-07	ci right 4.741469e-06	k: 4	n:2160000
Cons ci ratio: 4.606269e-03	ci left: 2.505199e-01	ci right 2.516770e-01	k: 542372	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
CARM1   2160000 perm   2166 sec   (997 perm/sec)   p_kst 9.259259e-07   p_cons 2.510981e-01   p_joint 1.851852e-06

Joint ci ratio: 1.753075e+00	ci left: 5.022423e-07	ci right 4.719619e-06	k: 4	n:2170000
Cons ci ratio: 4.595947e-03	ci left: 2.504964e-01	ci right 2.516508e-01	k: 544829	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
CARM1   2170000 perm   2184 sec   (993 perm/sec)   p_kst 9.216590e-07   p_cons 2.510733e-01   p_joint 1.843318e-06

Joint ci ratio: 1.753075e+00	ci left: 4.999385e-07	ci right 4.697970e-06	k: 4	n:2180000
Cons ci ratio: 4.585102e-03	ci left: 2.505217e-01	ci right 2.516735e-01	k: 547392	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
CARM1   2180000 perm   2203 sec   (990 perm/sec)   p_kst 9.174312e-07   p_cons 2.510972e-01   p_joint 1.834862e-06

Joint ci ratio: 1.753075e+00	ci left: 4.976556e-07	ci right 4.676518e-06	k: 4	n:2190000
Cons ci ratio: 4.575055e-03	ci left: 2.504874e-01	ci right 2.516365e-01	k: 549825	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
CARM1   2190000 perm   2221 sec   (986 perm/sec)   p_kst 9.132420e-07   p_cons 2.510616e-01   p_joint 1.826484e-06

Joint ci ratio: 1.753075e+00	ci left: 4.953936e-07	ci right 4.655261e-06	k: 4	n:2200000
Cons ci ratio: 4.564786e-03	ci left: 2.504771e-01	ci right 2.516235e-01	k: 552310	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
CARM1   2200000 perm   2239 sec   (982 perm/sec)   p_kst 9.090909e-07   p_cons 2.510500e-01   p_joint 1.818182e-06

Joint ci ratio: 1.959998e+00	ci left: 2.799422e-07	ci right 3.967087e-06	k: 3	n:2210000
Cons ci ratio: 4.554472e-03	ci left: 2.504764e-01	ci right 2.516202e-01	k: 554816	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
CARM1   2210000 perm   2258 sec   (979 perm/sec)   p_kst 9.049774e-07   p_cons 2.510480e-01   p_joint 1.357466e-06

Joint ci ratio: 1.959998e+00	ci left: 2.786812e-07	ci right 3.949217e-06	k: 3	n:2220000
Cons ci ratio: 4.544352e-03	ci left: 2.504653e-01	ci right 2.516065e-01	k: 557299	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
CARM1   2220000 perm   2277 sec   (975 perm/sec)   p_kst 9.009009e-07   p_cons 2.510356e-01   p_joint 1.351351e-06

Joint ci ratio: 1.959998e+00	ci left: 2.774315e-07	ci right 3.931508e-06	k: 3	n:2230000
Cons ci ratio: 4.534208e-03	ci left: 2.504619e-01	ci right 2.516006e-01	k: 559799	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
CARM1   2230000 perm   2296 sec   (971 perm/sec)   p_kst 8.968610e-07   p_cons 2.510309e-01   p_joint 1.345291e-06

Joint ci ratio: 1.959998e+00	ci left: 2.761930e-07	ci right 3.913956e-06	k: 3	n:2240000
Cons ci ratio: 4.524410e-03	ci left: 2.504354e-01	ci right 2.515715e-01	k: 562247	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
CARM1   2240000 perm   2314 sec   (968 perm/sec)   p_kst 8.928571e-07   p_cons 2.510031e-01   p_joint 1.339286e-06

Joint ci ratio: 1.959998e+00	ci left: 2.749655e-07	ci right 3.896561e-06	k: 3	n:2250000
Cons ci ratio: 4.514403e-03	ci left: 2.504318e-01	ci right 2.515653e-01	k: 564746	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
CARM1   2250000 perm   2333 sec   (964 perm/sec)   p_kst 8.888889e-07   p_cons 2.509982e-01   p_joint 1.333333e-06

Joint ci ratio: 1.959998e+00	ci left: 2.737488e-07	ci right 3.879319e-06	k: 3	n:2260000
Cons ci ratio: 4.504325e-03	ci left: 2.504397e-01	ci right 2.515707e-01	k: 567271	n:2260000
KS ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
CARM1   2260000 perm   2351 sec   (961 perm/sec)   p_kst 8.849558e-07   p_cons 2.510049e-01   p_joint 1.327434e-06

Joint ci ratio: 1.959998e+00	ci left: 2.725429e-07	ci right 3.862230e-06	k: 3	n:2270000
Cons ci ratio: 4.494135e-03	ci left: 2.504625e-01	ci right 2.515910e-01	k: 569830	n:2270000
KS ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
CARM1   2270000 perm   2370 sec   (958 perm/sec)   p_kst 8.810573e-07   p_cons 2.510264e-01   p_joint 1.321586e-06

Joint ci ratio: 1.959998e+00	ci left: 2.713475e-07	ci right 3.845290e-06	k: 3	n:2280000
Cons ci ratio: 4.484594e-03	ci left: 2.504364e-01	ci right 2.515625e-01	k: 572278	n:2280000
KS ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
CARM1   2280000 perm   2388 sec   (955 perm/sec)   p_kst 8.771930e-07   p_cons 2.509991e-01   p_joint 1.315789e-06

Joint ci ratio: 1.959998e+00	ci left: 2.701626e-07	ci right 3.828499e-06	k: 3	n:2290000
Cons ci ratio: 4.474470e-03	ci left: 2.504647e-01	ci right 2.515883e-01	k: 574850	n:2290000
KS ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
CARM1   2290000 perm   2407 sec   (952 perm/sec)   p_kst 8.733624e-07   p_cons 2.510262e-01   p_joint 1.310044e-06

Joint ci ratio: 1.959998e+00	ci left: 2.689880e-07	ci right 3.811853e-06	k: 3	n:2300000
Cons ci ratio: 4.464367e-03	ci left: 2.504967e-01	ci right 2.516179e-01	k: 577431	n:2300000
KS ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
CARM1   2300000 perm   2425 sec   (948 perm/sec)   p_kst 8.695652e-07   p_cons 2.510570e-01   p_joint 1.304348e-06

Joint ci ratio: 1.753075e+00	ci left: 4.718034e-07	ci right 4.433582e-06	k: 4	n:2310000
Cons ci ratio: 4.454686e-03	ci left: 2.504985e-01	ci right 2.516173e-01	k: 579943	n:2310000
KS ci ratio: 1.959998e+00	ci left: 2.678235e-07	ci right 3.795352e-06	k: 3	n:2310000
CARM1   2310000 perm   2445 sec   (945 perm/sec)   p_kst 1.298701e-06   p_cons 2.510576e-01   p_joint 1.731602e-06

Joint ci ratio: 1.753075e+00	ci left: 4.697698e-07	ci right 4.414472e-06	k: 4	n:2320000
Cons ci ratio: 4.445261e-03	ci left: 2.504839e-01	ci right 2.516003e-01	k: 582417	n:2320000
KS ci ratio: 1.959998e+00	ci left: 2.666691e-07	ci right 3.778992e-06	k: 3	n:2320000
CARM1   2320000 perm   2463 sec   (942 perm/sec)   p_kst 1.293103e-06   p_cons 2.510418e-01   p_joint 1.724138e-06

Joint ci ratio: 1.753075e+00	ci left: 4.677536e-07	ci right 4.395526e-06	k: 4	n:2330000
Cons ci ratio: 4.435932e-03	ci left: 2.504665e-01	ci right 2.515805e-01	k: 584884	n:2330000
KS ci ratio: 1.959998e+00	ci left: 2.655246e-07	ci right 3.762773e-06	k: 3	n:2330000
CARM1   2330000 perm   2482 sec   (939 perm/sec)   p_kst 1.287554e-06   p_cons 2.510232e-01   p_joint 1.716738e-06

Joint ci ratio: 1.753075e+00	ci left: 4.657546e-07	ci right 4.376741e-06	k: 4	n:2340000
Cons ci ratio: 4.426384e-03	ci left: 2.504727e-01	ci right 2.515843e-01	k: 587406	n:2340000
KS ci ratio: 1.959998e+00	ci left: 2.643899e-07	ci right 3.746693e-06	k: 3	n:2340000
CARM1   2340000 perm   2502 sec   (935 perm/sec)   p_kst 1.282051e-06   p_cons 2.510282e-01   p_joint 1.709402e-06

Joint ci ratio: 1.753075e+00	ci left: 4.637727e-07	ci right 4.358117e-06	k: 4	n:2350000
Cons ci ratio: 4.417058e-03	ci left: 2.504653e-01	ci right 2.515745e-01	k: 589896	n:2350000
KS ci ratio: 1.959998e+00	ci left: 2.632648e-07	ci right 3.730750e-06	k: 3	n:2350000
CARM1   2350000 perm   2522 sec   (932 perm/sec)   p_kst 1.276596e-06   p_cons 2.510196e-01   p_joint 1.702128e-06

Joint ci ratio: 1.753075e+00	ci left: 4.618075e-07	ci right 4.339650e-06	k: 4	n:2360000
Cons ci ratio: 4.407641e-03	ci left: 2.504706e-01	ci right 2.515774e-01	k: 592416	n:2360000
KS ci ratio: 1.959998e+00	ci left: 2.621493e-07	ci right 3.714942e-06	k: 3	n:2360000
CARM1   2360000 perm   2542 sec   (928 perm/sec)   p_kst 1.271186e-06   p_cons 2.510237e-01   p_joint 1.694915e-06

Joint ci ratio: 1.753075e+00	ci left: 4.598590e-07	ci right 4.321340e-06	k: 4	n:2370000
Cons ci ratio: 4.398180e-03	ci left: 2.504848e-01	ci right 2.515893e-01	k: 594957	n:2370000
KS ci ratio: 1.959998e+00	ci left: 2.610432e-07	ci right 3.699267e-06	k: 3	n:2370000
CARM1   2370000 perm   2562 sec   (925 perm/sec)   p_kst 1.265823e-06   p_cons 2.510367e-01   p_joint 1.687764e-06

Joint ci ratio: 1.959998e+00	ci left: 2.599463e-07	ci right 3.683724e-06	k: 3	n:2380000
Cons ci ratio: 4.388619e-03	ci left: 2.505126e-01	ci right 2.516149e-01	k: 597531	n:2380000
KS ci ratio: 1.959998e+00	ci left: 2.599463e-07	ci right 3.683724e-06	k: 3	n:2380000
CARM1   2380000 perm   2581 sec   (922 perm/sec)   p_kst 1.260504e-06   p_cons 2.510634e-01   p_joint 1.260504e-06

Joint ci ratio: 1.959998e+00	ci left: 2.588587e-07	ci right 3.668311e-06	k: 3	n:2390000
Cons ci ratio: 4.379407e-03	ci left: 2.505156e-01	ci right 2.516155e-01	k: 600046	n:2390000
KS ci ratio: 1.959998e+00	ci left: 2.588587e-07	ci right 3.668311e-06	k: 3	n:2390000
CARM1   2390000 perm   2600 sec   (919 perm/sec)   p_kst 1.255230e-06   p_cons 2.510653e-01   p_joint 1.255230e-06

Joint ci ratio: 1.959998e+00	ci left: 2.577801e-07	ci right 3.653026e-06	k: 3	n:2400000
Cons ci ratio: 4.370189e-03	ci left: 2.505240e-01	ci right 2.516216e-01	k: 602574	n:2400000
KS ci ratio: 1.959998e+00	ci left: 2.577801e-07	ci right 3.653026e-06	k: 3	n:2400000
CARM1   2400000 perm   2620 sec   (916 perm/sec)   p_kst 1.250000e-06   p_cons 2.510725e-01   p_joint 1.250000e-06

Joint ci ratio: 1.959998e+00	ci left: 2.567105e-07	ci right 3.637868e-06	k: 3	n:2410000
Cons ci ratio: 4.361179e-03	ci left: 2.505194e-01	ci right 2.516148e-01	k: 605071	n:2410000
KS ci ratio: 1.959998e+00	ci left: 2.567105e-07	ci right 3.637868e-06	k: 3	n:2410000
CARM1   2410000 perm   2640 sec   (913 perm/sec)   p_kst 1.244813e-06   p_cons 2.510668e-01   p_joint 1.244813e-06

Joint ci ratio: 1.959998e+00	ci left: 2.556497e-07	ci right 3.622836e-06	k: 3	n:2420000
Cons ci ratio: 4.352019e-03	ci left: 2.505327e-01	ci right 2.516258e-01	k: 607611	n:2420000
KS ci ratio: 1.959998e+00	ci left: 2.556497e-07	ci right 3.622836e-06	k: 3	n:2420000
CARM1   2420000 perm   2660 sec   (910 perm/sec)   p_kst 1.239669e-06   p_cons 2.510789e-01   p_joint 1.239669e-06

Joint ci ratio: 1.959998e+00	ci left: 2.545977e-07	ci right 3.607927e-06	k: 3	n:2430000
Cons ci ratio: 4.342755e-03	ci left: 2.505598e-01	ci right 2.516507e-01	k: 610185	n:2430000
KS ci ratio: 1.959998e+00	ci left: 2.545977e-07	ci right 3.607927e-06	k: 3	n:2430000
CARM1   2430000 perm   2679 sec   (907 perm/sec)   p_kst 1.234568e-06   p_cons 2.511049e-01   p_joint 1.234568e-06

Joint ci ratio: 1.959998e+00	ci left: 2.535542e-07	ci right 3.593140e-06	k: 3	n:2440000
Cons ci ratio: 4.333766e-03	ci left: 2.505679e-01	ci right 2.516565e-01	k: 612713	n:2440000
KS ci ratio: 1.959998e+00	ci left: 2.535542e-07	ci right 3.593140e-06	k: 3	n:2440000
CARM1   2440000 perm   2699 sec   (904 perm/sec)   p_kst 1.229508e-06   p_cons 2.511119e-01   p_joint 1.229508e-06

Joint ci ratio: 1.959998e+00	ci left: 2.525193e-07	ci right 3.578475e-06	k: 3	n:2450000
Cons ci ratio: 4.324852e-03	ci left: 2.505742e-01	ci right 2.516607e-01	k: 615237	n:2450000
KS ci ratio: 1.959998e+00	ci left: 2.525193e-07	ci right 3.578475e-06	k: 3	n:2450000
CARM1   2450000 perm   2719 sec   (901 perm/sec)   p_kst 1.224490e-06   p_cons 2.511171e-01   p_joint 1.224490e-06

Joint ci ratio: 1.959998e+00	ci left: 2.514928e-07	ci right 3.563928e-06	k: 3	n:2460000
Cons ci ratio: 4.316171e-03	ci left: 2.505651e-01	ci right 2.516493e-01	k: 617723	n:2460000
KS ci ratio: 1.959998e+00	ci left: 2.514928e-07	ci right 3.563928e-06	k: 3	n:2460000
CARM1   2460000 perm   2739 sec   (898 perm/sec)   p_kst 1.219512e-06   p_cons 2.511069e-01   p_joint 1.219512e-06

Joint ci ratio: 1.959998e+00	ci left: 2.504746e-07	ci right 3.549499e-06	k: 3	n:2470000
Cons ci ratio: 4.307388e-03	ci left: 2.505694e-01	ci right 2.516514e-01	k: 620242	n:2470000
KS ci ratio: 1.959998e+00	ci left: 2.504746e-07	ci right 3.549499e-06	k: 3	n:2470000
CARM1   2470000 perm   2761 sec   (895 perm/sec)   p_kst 1.214575e-06   p_cons 2.511101e-01   p_joint 1.214575e-06

Joint ci ratio: 1.959998e+00	ci left: 2.494646e-07	ci right 3.535187e-06	k: 3	n:2480000
Cons ci ratio: 4.298193e-03	ci left: 2.506144e-01	ci right 2.516943e-01	k: 622862	n:2480000
KS ci ratio: 1.959998e+00	ci left: 2.494646e-07	ci right 3.535187e-06	k: 3	n:2480000
CARM1   2480000 perm   2781 sec   (892 perm/sec)   p_kst 1.209677e-06   p_cons 2.511540e-01   p_joint 1.209677e-06

Joint ci ratio: 1.959998e+00	ci left: 2.484628e-07	ci right 3.520989e-06	k: 3	n:2490000
Cons ci ratio: 4.289492e-03	ci left: 2.506209e-01	ci right 2.516986e-01	k: 625387	n:2490000
KS ci ratio: 1.959998e+00	ci left: 2.484628e-07	ci right 3.520989e-06	k: 3	n:2490000
CARM1   2490000 perm   2802 sec   (889 perm/sec)   p_kst 1.204819e-06   p_cons 2.511594e-01   p_joint 1.204819e-06

Joint ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
Cons ci ratio: 4.280761e-03	ci left: 2.506345e-01	ci right 2.517101e-01	k: 627930	n:2500000
KS ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
CARM1   2500000 perm   2823 sec   (886 perm/sec)   p_kst 1.200000e-06   p_cons 2.511720e-01   p_joint 1.200000e-06

Joint ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
Cons ci ratio: 4.272233e-03	ci left: 2.506349e-01	ci right 2.517083e-01	k: 630440	n:2510000
KS ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
CARM1   2510000 perm   2843 sec   (883 perm/sec)   p_kst 1.195219e-06   p_cons 2.511713e-01   p_joint 1.195219e-06

Joint ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
Cons ci ratio: 4.264300e-03	ci left: 2.505873e-01	ci right 2.516585e-01	k: 632829	n:2520000
KS ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
CARM1   2520000 perm   2863 sec   (880 perm/sec)   p_kst 1.190476e-06   p_cons 2.511226e-01   p_joint 1.190476e-06

Joint ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
Cons ci ratio: 4.255995e-03	ci left: 2.505768e-01	ci right 2.516459e-01	k: 635311	n:2530000
KS ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
CARM1   2530000 perm   2884 sec   (877 perm/sec)   p_kst 1.185771e-06   p_cons 2.511111e-01   p_joint 1.185771e-06

Joint ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
Cons ci ratio: 4.247400e-03	ci left: 2.505963e-01	ci right 2.516633e-01	k: 637869	n:2540000
KS ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
CARM1   2540000 perm   2906 sec   (874 perm/sec)   p_kst 1.181102e-06   p_cons 2.511295e-01   p_joint 1.181102e-06

Joint ci ratio: 1.753075e+00	ci left: 4.273983e-07	ci right 4.016304e-06	k: 4	n:2550000
Cons ci ratio: 4.239211e-03	ci left: 2.505843e-01	ci right 2.516492e-01	k: 640347	n:2550000
KS ci ratio: 1.753075e+00	ci left: 4.273983e-07	ci right 4.016304e-06	k: 4	n:2550000
CARM1   2550000 perm   2926 sec   (871 perm/sec)   p_kst 1.568627e-06   p_cons 2.511165e-01   p_joint 1.568627e-06

Joint ci ratio: 1.753075e+00	ci left: 4.257288e-07	ci right 4.000616e-06	k: 4	n:2560000
Cons ci ratio: 4.231113e-03	ci left: 2.505685e-01	ci right 2.516313e-01	k: 642815	n:2560000
KS ci ratio: 1.753075e+00	ci left: 4.257288e-07	ci right 4.000616e-06	k: 4	n:2560000
CARM1   2560000 perm   2947 sec   (869 perm/sec)   p_kst 1.562500e-06   p_cons 2.510996e-01   p_joint 1.562500e-06

Joint ci ratio: 1.753075e+00	ci left: 4.240723e-07	ci right 3.985049e-06	k: 4	n:2570000
Cons ci ratio: 4.222795e-03	ci left: 2.505765e-01	ci right 2.516373e-01	k: 645344	n:2570000
KS ci ratio: 1.753075e+00	ci left: 4.240723e-07	ci right 3.985049e-06	k: 4	n:2570000
CARM1   2570000 perm   2969 sec   (866 perm/sec)   p_kst 1.556420e-06   p_cons 2.511066e-01   p_joint 1.556420e-06

Joint ci ratio: 1.753075e+00	ci left: 4.224286e-07	ci right 3.969603e-06	k: 4	n:2580000
Cons ci ratio: 4.214586e-03	ci left: 2.505791e-01	ci right 2.516378e-01	k: 647859	n:2580000
KS ci ratio: 1.753075e+00	ci left: 4.224286e-07	ci right 3.969603e-06	k: 4	n:2580000
CARM1   2580000 perm   2990 sec   (863 perm/sec)   p_kst 1.550388e-06   p_cons 2.511081e-01   p_joint 1.550388e-06

Joint ci ratio: 1.600331e+00	ci left: 6.268290e-07	ci right 4.505142e-06	k: 5	n:2590000
Cons ci ratio: 4.206382e-03	ci left: 2.505855e-01	ci right 2.516421e-01	k: 650384	n:2590000
KS ci ratio: 1.600331e+00	ci left: 6.268290e-07	ci right 4.505142e-06	k: 5	n:2590000
CARM1   2590000 perm   3011 sec   (860 perm/sec)   p_kst 1.930502e-06   p_cons 2.511135e-01   p_joint 1.930502e-06

Joint ci ratio: 1.600331e+00	ci left: 6.244181e-07	ci right 4.487814e-06	k: 5	n:2600000
Cons ci ratio: 4.197937e-03	ci left: 2.506176e-01	ci right 2.516722e-01	k: 652976	n:2600000
KS ci ratio: 1.600331e+00	ci left: 6.244181e-07	ci right 4.487814e-06	k: 5	n:2600000
CARM1   2600000 perm   3032 sec   (857 perm/sec)   p_kst 1.923077e-06   p_cons 2.511446e-01   p_joint 1.923077e-06

Joint ci ratio: 1.600331e+00	ci left: 6.220257e-07	ci right 4.470620e-06	k: 5	n:2610000
Cons ci ratio: 4.189877e-03	ci left: 2.506196e-01	ci right 2.516722e-01	k: 655490	n:2610000
KS ci ratio: 1.600331e+00	ci left: 6.220257e-07	ci right 4.470620e-06	k: 5	n:2610000
CARM1   2610000 perm   3054 sec   (855 perm/sec)   p_kst 1.915709e-06   p_cons 2.511456e-01   p_joint 1.915709e-06

Joint ci ratio: 1.600331e+00	ci left: 6.196516e-07	ci right 4.453556e-06	k: 5	n:2620000
Cons ci ratio: 4.181756e-03	ci left: 2.506311e-01	ci right 2.516817e-01	k: 658029	n:2620000
KS ci ratio: 1.600331e+00	ci left: 6.196516e-07	ci right 4.453556e-06	k: 5	n:2620000
CARM1   2620000 perm   3075 sec   (852 perm/sec)   p_kst 1.908397e-06   p_cons 2.511561e-01   p_joint 1.908397e-06

Joint ci ratio: 1.600331e+00	ci left: 6.172955e-07	ci right 4.436623e-06	k: 5	n:2630000
Cons ci ratio: 4.173523e-03	ci left: 2.506569e-01	ci right 2.517056e-01	k: 660606	n:2630000
KS ci ratio: 1.600331e+00	ci left: 6.172955e-07	ci right 4.436623e-06	k: 5	n:2630000
CARM1   2630000 perm   3097 sec   (849 perm/sec)   p_kst 1.901141e-06   p_cons 2.511810e-01   p_joint 1.901141e-06

Joint ci ratio: 1.600331e+00	ci left: 6.149572e-07	ci right 4.419817e-06	k: 5	n:2640000
Cons ci ratio: 4.165581e-03	ci left: 2.506606e-01	ci right 2.517073e-01	k: 663125	n:2640000
KS ci ratio: 1.600331e+00	ci left: 6.149572e-07	ci right 4.419817e-06	k: 5	n:2640000
CARM1   2640000 perm   3119 sec   (846 perm/sec)   p_kst 1.893939e-06   p_cons 2.511837e-01   p_joint 1.893939e-06

Joint ci ratio: 1.600331e+00	ci left: 6.126366e-07	ci right 4.403139e-06	k: 5	n:2650000
Cons ci ratio: 4.157446e-03	ci left: 2.506858e-01	ci right 2.517306e-01	k: 665701	n:2650000
KS ci ratio: 1.600331e+00	ci left: 6.126366e-07	ci right 4.403139e-06	k: 5	n:2650000
CARM1   2650000 perm   3141 sec   (844 perm/sec)   p_kst 1.886792e-06   p_cons 2.512079e-01   p_joint 1.886792e-06

Joint ci ratio: 1.600331e+00	ci left: 6.103335e-07	ci right 4.386586e-06	k: 5	n:2660000
Cons ci ratio: 4.149724e-03	ci left: 2.506778e-01	ci right 2.517205e-01	k: 668189	n:2660000
KS ci ratio: 1.600331e+00	ci left: 6.103335e-07	ci right 4.386586e-06	k: 5	n:2660000
CARM1   2660000 perm   3162 sec   (841 perm/sec)   p_kst 1.879699e-06   p_cons 2.511989e-01   p_joint 1.879699e-06

Joint ci ratio: 1.600331e+00	ci left: 6.080476e-07	ci right 4.370156e-06	k: 5	n:2670000
Cons ci ratio: 4.141781e-03	ci left: 2.506937e-01	ci right 2.517345e-01	k: 670741	n:2670000
KS ci ratio: 1.600331e+00	ci left: 6.080476e-07	ci right 4.370156e-06	k: 5	n:2670000
CARM1   2670000 perm   3184 sec   (838 perm/sec)   p_kst 1.872659e-06   p_cons 2.512139e-01   p_joint 1.872659e-06

Joint ci ratio: 1.600331e+00	ci left: 6.057788e-07	ci right 4.353850e-06	k: 5	n:2680000
Cons ci ratio: 4.134125e-03	ci left: 2.506875e-01	ci right 2.517264e-01	k: 673234	n:2680000
KS ci ratio: 1.600331e+00	ci left: 6.057788e-07	ci right 4.353850e-06	k: 5	n:2680000
CARM1   2680000 perm   3206 sec   (836 perm/sec)   p_kst 1.865672e-06   p_cons 2.512067e-01   p_joint 1.865672e-06

Joint ci ratio: 1.600331e+00	ci left: 6.035268e-07	ci right 4.337665e-06	k: 5	n:2690000
Cons ci ratio: 4.126368e-03	ci left: 2.506944e-01	ci right 2.517314e-01	k: 675762	n:2690000
KS ci ratio: 1.600331e+00	ci left: 6.035268e-07	ci right 4.337665e-06	k: 5	n:2690000
CARM1   2690000 perm   3228 sec   (833 perm/sec)   p_kst 1.858736e-06   p_cons 2.512126e-01   p_joint 1.858736e-06

Joint ci ratio: 1.600331e+00	ci left: 6.012915e-07	ci right 4.321599e-06	k: 5	n:2700000
Cons ci ratio: 4.118412e-03	ci left: 2.507235e-01	ci right 2.517585e-01	k: 678350	n:2700000
KS ci ratio: 1.600331e+00	ci left: 6.012915e-07	ci right 4.321599e-06	k: 5	n:2700000
CARM1   2700000 perm   3250 sec   (831 perm/sec)   p_kst 1.851852e-06   p_cons 2.512407e-01   p_joint 1.851852e-06

Joint ci ratio: 1.600331e+00	ci left: 5.990727e-07	ci right 4.305652e-06	k: 5	n:2710000
Cons ci ratio: 4.110861e-03	ci left: 2.507195e-01	ci right 2.517526e-01	k: 680849	n:2710000
KS ci ratio: 1.600331e+00	ci left: 5.990727e-07	ci right 4.305652e-06	k: 5	n:2710000
CARM1   2710000 perm   3272 sec   (828 perm/sec)   p_kst 1.845018e-06   p_cons 2.512358e-01   p_joint 1.845018e-06

Joint ci ratio: 1.600331e+00	ci left: 5.968703e-07	ci right 4.289823e-06	k: 5	n:2720000
Cons ci ratio: 4.102946e-03	ci left: 2.507526e-01	ci right 2.517839e-01	k: 683449	n:2720000
KS ci ratio: 1.600331e+00	ci left: 5.968703e-07	ci right 4.289823e-06	k: 5	n:2720000
CARM1   2720000 perm   3295 sec   (826 perm/sec)   p_kst 1.838235e-06   p_cons 2.512680e-01   p_joint 1.838235e-06

Joint ci ratio: 1.600331e+00	ci left: 5.946839e-07	ci right 4.274109e-06	k: 5	n:2730000
Cons ci ratio: 4.095566e-03	ci left: 2.507405e-01	ci right 2.517699e-01	k: 685926	n:2730000
KS ci ratio: 1.600331e+00	ci left: 5.946839e-07	ci right 4.274109e-06	k: 5	n:2730000
CARM1   2730000 perm   3317 sec   (823 perm/sec)   p_kst 1.831502e-06   p_cons 2.512549e-01   p_joint 1.831502e-06

Joint ci ratio: 1.600331e+00	ci left: 5.925135e-07	ci right 4.258510e-06	k: 5	n:2740000
Cons ci ratio: 4.088274e-03	ci left: 2.507241e-01	ci right 2.517516e-01	k: 688391	n:2740000
KS ci ratio: 1.600331e+00	ci left: 5.925135e-07	ci right 4.258510e-06	k: 5	n:2740000
CARM1   2740000 perm   3340 sec   (820 perm/sec)   p_kst 1.824818e-06   p_cons 2.512376e-01   p_joint 1.824818e-06

Joint ci ratio: 1.600331e+00	ci left: 5.903589e-07	ci right 4.243025e-06	k: 5	n:2750000
Cons ci ratio: 4.080860e-03	ci left: 2.507227e-01	ci right 2.517483e-01	k: 690897	n:2750000
KS ci ratio: 1.600331e+00	ci left: 5.903589e-07	ci right 4.243025e-06	k: 5	n:2750000
CARM1   2750000 perm   3363 sec   (818 perm/sec)   p_kst 1.818182e-06   p_cons 2.512353e-01   p_joint 1.818182e-06

Joint ci ratio: 1.600331e+00	ci left: 5.882200e-07	ci right 4.227651e-06	k: 5	n:2760000
Cons ci ratio: 4.073622e-03	ci left: 2.507087e-01	ci right 2.517324e-01	k: 693368	n:2760000
KS ci ratio: 1.600331e+00	ci left: 5.882200e-07	ci right 4.227651e-06	k: 5	n:2760000
CARM1   2760000 perm   3386 sec   (815 perm/sec)   p_kst 1.811594e-06   p_cons 2.512203e-01   p_joint 1.811594e-06

Joint ci ratio: 1.600331e+00	ci left: 5.860964e-07	ci right 4.212389e-06	k: 5	n:2770000
Cons ci ratio: 4.066252e-03	ci left: 2.507106e-01	ci right 2.517325e-01	k: 695883	n:2770000
KS ci ratio: 1.600331e+00	ci left: 5.860964e-07	ci right 4.212389e-06	k: 5	n:2770000
CARM1   2770000 perm   3409 sec   (812 perm/sec)   p_kst 1.805054e-06   p_cons 2.512213e-01   p_joint 1.805054e-06

Joint ci ratio: 1.600331e+00	ci left: 5.839882e-07	ci right 4.197237e-06	k: 5	n:2780000
Cons ci ratio: 4.059146e-03	ci left: 2.506917e-01	ci right 2.517117e-01	k: 698340	n:2780000
KS ci ratio: 1.600331e+00	ci left: 5.839882e-07	ci right 4.197237e-06	k: 5	n:2780000
CARM1   2780000 perm   3432 sec   (810 perm/sec)   p_kst 1.798561e-06   p_cons 2.512014e-01   p_joint 1.798561e-06

Joint ci ratio: 1.600331e+00	ci left: 5.818950e-07	ci right 4.182193e-06	k: 5	n:2790000
Cons ci ratio: 4.051568e-03	ci left: 2.507202e-01	ci right 2.517384e-01	k: 700929	n:2790000
KS ci ratio: 1.600331e+00	ci left: 5.818950e-07	ci right 4.182193e-06	k: 5	n:2790000
CARM1   2790000 perm   3454 sec   (808 perm/sec)   p_kst 1.792115e-06   p_cons 2.512290e-01   p_joint 1.792115e-06

Joint ci ratio: 1.600331e+00	ci left: 5.798168e-07	ci right 4.167256e-06	k: 5	n:2800000
Cons ci ratio: 4.044266e-03	ci left: 2.507267e-01	ci right 2.517431e-01	k: 703457	n:2800000
KS ci ratio: 1.600331e+00	ci left: 5.798168e-07	ci right 4.167256e-06	k: 5	n:2800000
CARM1   2800000 perm   3477 sec   (805 perm/sec)   p_kst 1.785714e-06   p_cons 2.512346e-01   p_joint 1.785714e-06

Joint ci ratio: 1.600331e+00	ci left: 5.777534e-07	ci right 4.152426e-06	k: 5	n:2810000
Cons ci ratio: 4.036958e-03	ci left: 2.507374e-01	ci right 2.517520e-01	k: 705997	n:2810000
KS ci ratio: 1.600331e+00	ci left: 5.777534e-07	ci right 4.152426e-06	k: 5	n:2810000
CARM1   2810000 perm   3503 sec   (802 perm/sec)   p_kst 1.779359e-06   p_cons 2.512445e-01   p_joint 1.779359e-06

Joint ci ratio: 1.600331e+00	ci left: 5.757046e-07	ci right 4.137702e-06	k: 5	n:2820000
Cons ci ratio: 4.029947e-03	ci left: 2.507240e-01	ci right 2.517368e-01	k: 708469	n:2820000
KS ci ratio: 1.600331e+00	ci left: 5.757046e-07	ci right 4.137702e-06	k: 5	n:2820000
CARM1   2820000 perm   3527 sec   (800 perm/sec)   p_kst 1.773050e-06   p_cons 2.512301e-01   p_joint 1.773050e-06

Joint ci ratio: 1.600331e+00	ci left: 5.736703e-07	ci right 4.123081e-06	k: 5	n:2830000
Cons ci ratio: 4.022750e-03	ci left: 2.507315e-01	ci right 2.517425e-01	k: 711000	n:2830000
KS ci ratio: 1.600331e+00	ci left: 5.736703e-07	ci right 4.123081e-06	k: 5	n:2830000
CARM1   2830000 perm   3550 sec   (797 perm/sec)   p_kst 1.766784e-06   p_cons 2.512367e-01   p_joint 1.766784e-06

Joint ci ratio: 1.600331e+00	ci left: 5.716504e-07	ci right 4.108563e-06	k: 5	n:2840000
Cons ci ratio: 4.015648e-03	ci left: 2.507337e-01	ci right 2.517429e-01	k: 713516	n:2840000
KS ci ratio: 1.600331e+00	ci left: 5.716504e-07	ci right 4.108563e-06	k: 5	n:2840000
CARM1   2840000 perm   3574 sec   (795 perm/sec)   p_kst 1.760563e-06   p_cons 2.512380e-01   p_joint 1.760563e-06

Joint ci ratio: 1.600331e+00	ci left: 5.696446e-07	ci right 4.094147e-06	k: 5	n:2850000
Cons ci ratio: 4.008576e-03	ci left: 2.507365e-01	ci right 2.517440e-01	k: 716034	n:2850000
KS ci ratio: 1.600331e+00	ci left: 5.696446e-07	ci right 4.094147e-06	k: 5	n:2850000
CARM1   2850000 perm   3597 sec   (792 perm/sec)   p_kst 1.754386e-06   p_cons 2.512400e-01   p_joint 1.754386e-06

Joint ci ratio: 1.600331e+00	ci left: 5.676528e-07	ci right 4.079832e-06	k: 5	n:2860000
Cons ci ratio: 4.001772e-03	ci left: 2.507177e-01	ci right 2.517234e-01	k: 718490	n:2860000
KS ci ratio: 1.600331e+00	ci left: 5.676528e-07	ci right 4.079832e-06	k: 5	n:2860000
CARM1   2860000 perm   3620 sec   (790 perm/sec)   p_kst 1.748252e-06   p_cons 2.512203e-01   p_joint 1.748252e-06

Joint ci ratio: 1.600331e+00	ci left: 5.656749e-07	ci right 4.065616e-06	k: 5	n:2870000
Cons ci ratio: 3.994595e-03	ci left: 2.507373e-01	ci right 2.517412e-01	k: 721056	n:2870000
KS ci ratio: 1.600331e+00	ci left: 5.656749e-07	ci right 4.065616e-06	k: 5	n:2870000
CARM1   2870000 perm   3643 sec   (788 perm/sec)   p_kst 1.742160e-06   p_cons 2.512390e-01   p_joint 1.742160e-06

Joint ci ratio: 1.600331e+00	ci left: 5.637108e-07	ci right 4.051500e-06	k: 5	n:2880000
Cons ci ratio: 3.987534e-03	ci left: 2.507495e-01	ci right 2.517517e-01	k: 723601	n:2880000
KS ci ratio: 1.600331e+00	ci left: 5.637108e-07	ci right 4.051500e-06	k: 5	n:2880000
CARM1   2880000 perm   3668 sec   (785 perm/sec)   p_kst 1.736111e-06   p_cons 2.512503e-01   p_joint 1.736111e-06

Joint ci ratio: 1.600331e+00	ci left: 5.617602e-07	ci right 4.037480e-06	k: 5	n:2890000
Cons ci ratio: 3.980580e-03	ci left: 2.507550e-01	ci right 2.517555e-01	k: 726127	n:2890000
KS ci ratio: 1.600331e+00	ci left: 5.617602e-07	ci right 4.037480e-06	k: 5	n:2890000
CARM1   2890000 perm   3692 sec   (783 perm/sec)   p_kst 1.730104e-06   p_cons 2.512550e-01   p_joint 1.730104e-06

Joint ci ratio: 1.600331e+00	ci left: 5.598231e-07	ci right 4.023558e-06	k: 5	n:2900000
Cons ci ratio: 3.973898e-03	ci left: 2.507381e-01	ci right 2.517368e-01	k: 728588	n:2900000
KS ci ratio: 1.600331e+00	ci left: 5.598231e-07	ci right 4.023558e-06	k: 5	n:2900000
CARM1   2900000 perm   3716 sec   (780 perm/sec)   p_kst 1.724138e-06   p_cons 2.512372e-01   p_joint 1.724138e-06

Joint ci ratio: 1.600331e+00	ci left: 5.578993e-07	ci right 4.009732e-06	k: 5	n:2910000
Cons ci ratio: 3.967370e-03	ci left: 2.507100e-01	ci right 2.517070e-01	k: 731016	n:2910000
KS ci ratio: 1.600331e+00	ci left: 5.578993e-07	ci right 4.009732e-06	k: 5	n:2910000
CARM1   2910000 perm   3740 sec   (778 perm/sec)   p_kst 1.718213e-06   p_cons 2.512082e-01   p_joint 1.718213e-06

Joint ci ratio: 1.600331e+00	ci left: 5.559887e-07	ci right 3.996000e-06	k: 5	n:2920000
Cons ci ratio: 3.960597e-03	ci left: 2.507084e-01	ci right 2.517037e-01	k: 733521	n:2920000
KS ci ratio: 1.600331e+00	ci left: 5.559887e-07	ci right 3.996000e-06	k: 5	n:2920000
CARM1   2920000 perm   3763 sec   (776 perm/sec)   p_kst 1.712329e-06   p_cons 2.512058e-01   p_joint 1.712329e-06

Joint ci ratio: 1.600331e+00	ci left: 5.540911e-07	ci right 3.982361e-06	k: 5	n:2930000
Cons ci ratio: 3.953789e-03	ci left: 2.507134e-01	ci right 2.517069e-01	k: 736045	n:2930000
KS ci ratio: 1.600331e+00	ci left: 5.540911e-07	ci right 3.982361e-06	k: 5	n:2930000
CARM1   2930000 perm   3787 sec   (774 perm/sec)   p_kst 1.706485e-06   p_cons 2.512099e-01   p_joint 1.706485e-06

Joint ci ratio: 1.600331e+00	ci left: 5.522065e-07	ci right 3.968816e-06	k: 5	n:2940000
Cons ci ratio: 3.947110e-03	ci left: 2.507094e-01	ci right 2.517013e-01	k: 738543	n:2940000
KS ci ratio: 1.600331e+00	ci left: 5.522065e-07	ci right 3.968816e-06	k: 5	n:2940000
CARM1   2940000 perm   3811 sec   (772 perm/sec)   p_kst 1.700680e-06   p_cons 2.512051e-01   p_joint 1.700680e-06

Joint ci ratio: 1.600331e+00	ci left: 5.503346e-07	ci right 3.955362e-06	k: 5	n:2950000
Cons ci ratio: 3.940521e-03	ci left: 2.507001e-01	ci right 2.516902e-01	k: 741025	n:2950000
KS ci ratio: 1.600331e+00	ci left: 5.503346e-07	ci right 3.955362e-06	k: 5	n:2950000
CARM1   2950000 perm   3835 sec   (769 perm/sec)   p_kst 1.694915e-06   p_cons 2.511949e-01   p_joint 1.694915e-06

Joint ci ratio: 1.600331e+00	ci left: 5.484754e-07	ci right 3.942000e-06	k: 5	n:2960000
Cons ci ratio: 3.933852e-03	ci left: 2.507016e-01	ci right 2.516901e-01	k: 743539	n:2960000
KS ci ratio: 1.600331e+00	ci left: 5.484754e-07	ci right 3.942000e-06	k: 5	n:2960000
CARM1   2960000 perm   3859 sec   (767 perm/sec)   p_kst 1.689189e-06   p_cons 2.511956e-01   p_joint 1.689189e-06

Joint ci ratio: 1.600331e+00	ci left: 5.466286e-07	ci right 3.928727e-06	k: 5	n:2970000
Cons ci ratio: 3.927557e-03	ci left: 2.506705e-01	ci right 2.516573e-01	k: 745956	n:2970000
KS ci ratio: 1.600331e+00	ci left: 5.466286e-07	ci right 3.928727e-06	k: 5	n:2970000
CARM1   2970000 perm   3884 sec   (765 perm/sec)   p_kst 1.683502e-06   p_cons 2.511636e-01   p_joint 1.683502e-06

Joint ci ratio: 1.600331e+00	ci left: 5.447943e-07	ci right 3.915543e-06	k: 5	n:2980000
Cons ci ratio: 3.921125e-03	ci left: 2.506557e-01	ci right 2.516408e-01	k: 748421	n:2980000
KS ci ratio: 1.600331e+00	ci left: 5.447943e-07	ci right 3.915543e-06	k: 5	n:2980000
CARM1   2980000 perm   3908 sec   (762 perm/sec)   p_kst 1.677852e-06   p_cons 2.511480e-01   p_joint 1.677852e-06

Joint ci ratio: 1.600331e+00	ci left: 5.429723e-07	ci right 3.902448e-06	k: 5	n:2990000
Cons ci ratio: 3.914533e-03	ci left: 2.506593e-01	ci right 2.516428e-01	k: 750941	n:2990000
KS ci ratio: 1.600331e+00	ci left: 5.429723e-07	ci right 3.902448e-06	k: 5	n:2990000
CARM1   2990000 perm   3932 sec   (760 perm/sec)   p_kst 1.672241e-06   p_cons 2.511508e-01   p_joint 1.672241e-06

Joint ci ratio: 1.600331e+00	ci left: 5.411623e-07	ci right 3.889440e-06	k: 5	n:3000000
Cons ci ratio: 3.907960e-03	ci left: 2.506643e-01	ci right 2.516461e-01	k: 753465	n:3000000
KS ci ratio: 1.600331e+00	ci left: 5.411623e-07	ci right 3.889440e-06	k: 5	n:3000000
CARM1   3000000 perm   3956 sec   (758 perm/sec)   p_kst 1.666667e-06   p_cons 2.511550e-01   p_joint 1.666667e-06

Joint ci ratio: 1.600331e+00	ci left: 5.393645e-07	ci right 3.876518e-06	k: 5	n:3010000
Cons ci ratio: 3.901685e-03	ci left: 2.506437e-01	ci right 2.516239e-01	k: 755912	n:3010000
KS ci ratio: 1.600331e+00	ci left: 5.393645e-07	ci right 3.876518e-06	k: 5	n:3010000
CARM1   3010000 perm   3982 sec   (756 perm/sec)   p_kst 1.661130e-06   p_cons 2.511336e-01   p_joint 1.661130e-06

Joint ci ratio: 1.600331e+00	ci left: 5.375785e-07	ci right 3.863682e-06	k: 5	n:3020000
Cons ci ratio: 3.895098e-03	ci left: 2.506563e-01	ci right 2.516349e-01	k: 758459	n:3020000
KS ci ratio: 1.600331e+00	ci left: 5.375785e-07	ci right 3.863682e-06	k: 5	n:3020000
CARM1   3020000 perm   4007 sec   (754 perm/sec)   p_kst 1.655629e-06   p_cons 2.511454e-01   p_joint 1.655629e-06

Joint ci ratio: 1.600331e+00	ci left: 5.358043e-07	ci right 3.850930e-06	k: 5	n:3030000
Cons ci ratio: 3.888735e-03	ci left: 2.506504e-01	ci right 2.516273e-01	k: 760950	n:3030000
KS ci ratio: 1.600331e+00	ci left: 5.358043e-07	ci right 3.850930e-06	k: 5	n:3030000
CARM1   3030000 perm   4032 sec   (751 perm/sec)   p_kst 1.650165e-06   p_cons 2.511386e-01   p_joint 1.650165e-06

Joint ci ratio: 1.600331e+00	ci left: 5.340418e-07	ci right 3.838263e-06	k: 5	n:3040000
Cons ci ratio: 3.882318e-03	ci left: 2.506527e-01	ci right 2.516280e-01	k: 763466	n:3040000
KS ci ratio: 1.600331e+00	ci left: 5.340418e-07	ci right 3.838263e-06	k: 5	n:3040000
CARM1   3040000 perm   4058 sec   (749 perm/sec)   p_kst 1.644737e-06   p_cons 2.511401e-01   p_joint 1.644737e-06

Joint ci ratio: 1.600331e+00	ci left: 5.322908e-07	ci right 3.825678e-06	k: 5	n:3050000
Cons ci ratio: 3.875963e-03	ci left: 2.506521e-01	ci right 2.516258e-01	k: 765973	n:3050000
KS ci ratio: 1.600331e+00	ci left: 5.322908e-07	ci right 3.825678e-06	k: 5	n:3050000
CARM1   3050000 perm   4082 sec   (747 perm/sec)   p_kst 1.639344e-06   p_cons 2.511387e-01   p_joint 1.639344e-06

Joint ci ratio: 1.600331e+00	ci left: 5.305513e-07	ci right 3.813176e-06	k: 5	n:3060000
Cons ci ratio: 3.869643e-03	ci left: 2.506511e-01	ci right 2.516232e-01	k: 768479	n:3060000
KS ci ratio: 1.600331e+00	ci left: 5.305513e-07	ci right 3.813176e-06	k: 5	n:3060000
CARM1   3060000 perm   4107 sec   (745 perm/sec)   p_kst 1.633987e-06   p_cons 2.511369e-01   p_joint 1.633987e-06

Joint ci ratio: 1.600331e+00	ci left: 5.288231e-07	ci right 3.800756e-06	k: 5	n:3070000
Cons ci ratio: 3.863253e-03	ci left: 2.506599e-01	ci right 2.516305e-01	k: 771015	n:3070000
KS ci ratio: 1.600331e+00	ci left: 5.288231e-07	ci right 3.800756e-06	k: 5	n:3070000
CARM1   3070000 perm   4132 sec   (743 perm/sec)   p_kst 1.628664e-06   p_cons 2.511450e-01   p_joint 1.628664e-06

Joint ci ratio: 1.600331e+00	ci left: 5.271062e-07	ci right 3.788415e-06	k: 5	n:3080000
Cons ci ratio: 3.857164e-03	ci left: 2.506424e-01	ci right 2.516113e-01	k: 773470	n:3080000
KS ci ratio: 1.600331e+00	ci left: 5.271062e-07	ci right 3.788415e-06	k: 5	n:3080000
CARM1   3080000 perm   4159 sec   (741 perm/sec)   p_kst 1.623377e-06   p_cons 2.511266e-01   p_joint 1.623377e-06

Joint ci ratio: 1.600331e+00	ci left: 5.254003e-07	ci right 3.776155e-06	k: 5	n:3090000
Cons ci ratio: 3.850922e-03	ci left: 2.506428e-01	ci right 2.516101e-01	k: 775980	n:3090000
KS ci ratio: 1.600331e+00	ci left: 5.254003e-07	ci right 3.776155e-06	k: 5	n:3090000
CARM1   3090000 perm   4183 sec   (739 perm/sec)   p_kst 1.618123e-06   p_cons 2.511262e-01   p_joint 1.618123e-06

Joint ci ratio: 1.600331e+00	ci left: 5.237055e-07	ci right 3.763974e-06	k: 5	n:3100000
Cons ci ratio: 3.844766e-03	ci left: 2.506377e-01	ci right 2.516035e-01	k: 778473	n:3100000
KS ci ratio: 1.600331e+00	ci left: 5.237055e-07	ci right 3.763974e-06	k: 5	n:3100000
CARM1   3100000 perm   4208 sec   (737 perm/sec)   p_kst 1.612903e-06   p_cons 2.511203e-01   p_joint 1.612903e-06

Joint ci ratio: 1.600331e+00	ci left: 5.220215e-07	ci right 3.751871e-06	k: 5	n:3110000
Cons ci ratio: 3.838876e-03	ci left: 2.506094e-01	ci right 2.515737e-01	k: 780894	n:3110000
KS ci ratio: 1.600331e+00	ci left: 5.220215e-07	ci right 3.751871e-06	k: 5	n:3110000
CARM1   3110000 perm   4233 sec   (735 perm/sec)   p_kst 1.607717e-06   p_cons 2.510913e-01   p_joint 1.607717e-06

Joint ci ratio: 1.600332e+00	ci left: 5.203484e-07	ci right 3.739846e-06	k: 5	n:3120000
Cons ci ratio: 3.832768e-03	ci left: 2.506054e-01	ci right 2.515681e-01	k: 783390	n:3120000
KS ci ratio: 1.600332e+00	ci left: 5.203484e-07	ci right 3.739846e-06	k: 5	n:3120000
CARM1   3120000 perm   4258 sec   (733 perm/sec)   p_kst 1.602564e-06   p_cons 2.510865e-01   p_joint 1.602564e-06

Joint ci ratio: 1.600332e+00	ci left: 5.186859e-07	ci right 3.727898e-06	k: 5	n:3130000
Cons ci ratio: 3.826562e-03	ci left: 2.506139e-01	ci right 2.515750e-01	k: 785925	n:3130000
KS ci ratio: 1.600332e+00	ci left: 5.186859e-07	ci right 3.727898e-06	k: 5	n:3130000
CARM1   3130000 perm   4284 sec   (731 perm/sec)   p_kst 1.597444e-06   p_cons 2.510942e-01   p_joint 1.597444e-06

Joint ci ratio: 1.600332e+00	ci left: 5.170341e-07	ci right 3.716025e-06	k: 5	n:3140000
Cons ci ratio: 3.820505e-03	ci left: 2.506106e-01	ci right 2.515702e-01	k: 788423	n:3140000
KS ci ratio: 1.600332e+00	ci left: 5.170341e-07	ci right 3.716025e-06	k: 5	n:3140000
CARM1   3140000 perm   4310 sec   (729 perm/sec)   p_kst 1.592357e-06   p_cons 2.510901e-01   p_joint 1.592357e-06

Joint ci ratio: 1.600332e+00	ci left: 5.153927e-07	ci right 3.704228e-06	k: 5	n:3150000
Cons ci ratio: 3.814401e-03	ci left: 2.506148e-01	ci right 2.515729e-01	k: 790945	n:3150000
KS ci ratio: 1.600332e+00	ci left: 5.153927e-07	ci right 3.704228e-06	k: 5	n:3150000
CARM1   3150000 perm   4335 sec   (727 perm/sec)   p_kst 1.587302e-06   p_cons 2.510937e-01   p_joint 1.587302e-06

Joint ci ratio: 1.600332e+00	ci left: 5.137617e-07	ci right 3.692506e-06	k: 5	n:3160000
Cons ci ratio: 3.808440e-03	ci left: 2.506077e-01	ci right 2.515643e-01	k: 793431	n:3160000
KS ci ratio: 1.600332e+00	ci left: 5.137617e-07	ci right 3.692506e-06	k: 5	n:3160000
CARM1   3160000 perm   4361 sec   (725 perm/sec)   p_kst 1.582278e-06   p_cons 2.510858e-01   p_joint 1.582278e-06

Joint ci ratio: 1.600332e+00	ci left: 5.121410e-07	ci right 3.680858e-06	k: 5	n:3170000
Cons ci ratio: 3.802431e-03	ci left: 2.506082e-01	ci right 2.515632e-01	k: 795941	n:3170000
KS ci ratio: 1.600332e+00	ci left: 5.121410e-07	ci right 3.680858e-06	k: 5	n:3170000
CARM1   3170000 perm   4387 sec   (723 perm/sec)   p_kst 1.577287e-06   p_cons 2.510855e-01   p_joint 1.577287e-06

Joint ci ratio: 1.600332e+00	ci left: 5.105305e-07	ci right 3.669283e-06	k: 5	n:3180000
Cons ci ratio: 3.796241e-03	ci left: 2.506294e-01	ci right 2.515830e-01	k: 798517	n:3180000
KS ci ratio: 1.600332e+00	ci left: 5.105305e-07	ci right 3.669283e-06	k: 5	n:3180000
CARM1   3180000 perm   4413 sec   (721 perm/sec)   p_kst 1.572327e-06   p_cons 2.511060e-01   p_joint 1.572327e-06

Joint ci ratio: 1.600332e+00	ci left: 5.089301e-07	ci right 3.657781e-06	k: 5	n:3190000
Cons ci ratio: 3.790220e-03	ci left: 2.506367e-01	ci right 2.515888e-01	k: 801049	n:3190000
KS ci ratio: 1.600332e+00	ci left: 5.089301e-07	ci right 3.657781e-06	k: 5	n:3190000
CARM1   3190000 perm   4438 sec   (719 perm/sec)   p_kst 1.567398e-06   p_cons 2.511125e-01   p_joint 1.567398e-06

Joint ci ratio: 1.600332e+00	ci left: 5.073397e-07	ci right 3.646350e-06	k: 5	n:3200000
Cons ci ratio: 3.784338e-03	ci left: 2.506331e-01	ci right 2.515836e-01	k: 803546	n:3200000
KS ci ratio: 1.600332e+00	ci left: 5.073397e-07	ci right 3.646350e-06	k: 5	n:3200000
CARM1   3200000 perm   4464 sec   (717 perm/sec)   p_kst 1.562500e-06   p_cons 2.511081e-01   p_joint 1.562500e-06

Joint ci ratio: 1.600332e+00	ci left: 5.057592e-07	ci right 3.634991e-06	k: 5	n:3210000
Cons ci ratio: 3.778720e-03	ci left: 2.506058e-01	ci right 2.515548e-01	k: 805967	n:3210000
KS ci ratio: 1.600332e+00	ci left: 5.057592e-07	ci right 3.634991e-06	k: 5	n:3210000
CARM1   3210000 perm   4490 sec   (715 perm/sec)   p_kst 1.557632e-06   p_cons 2.510801e-01   p_joint 1.557632e-06

Joint ci ratio: 1.600332e+00	ci left: 5.041885e-07	ci right 3.623702e-06	k: 5	n:3220000
Cons ci ratio: 3.772904e-03	ci left: 2.506010e-01	ci right 2.515485e-01	k: 808460	n:3220000
KS ci ratio: 1.600332e+00	ci left: 5.041885e-07	ci right 3.623702e-06	k: 5	n:3220000
CARM1   3220000 perm   4516 sec   (713 perm/sec)   p_kst 1.552795e-06   p_cons 2.510745e-01   p_joint 1.552795e-06

Joint ci ratio: 1.600332e+00	ci left: 5.026276e-07	ci right 3.612483e-06	k: 5	n:3230000
Cons ci ratio: 3.766894e-03	ci left: 2.506182e-01	ci right 2.515643e-01	k: 811024	n:3230000
KS ci ratio: 1.600332e+00	ci left: 5.026276e-07	ci right 3.612483e-06	k: 5	n:3230000
CARM1   3230000 perm   4542 sec   (711 perm/sec)   p_kst 1.547988e-06   p_cons 2.510910e-01   p_joint 1.547988e-06

Joint ci ratio: 1.600332e+00	ci left: 5.010762e-07	ci right 3.601333e-06	k: 5	n:3240000
Cons ci ratio: 3.760742e-03	ci left: 2.506523e-01	ci right 2.515970e-01	k: 813643	n:3240000
KS ci ratio: 1.600332e+00	ci left: 5.010762e-07	ci right 3.601333e-06	k: 5	n:3240000
CARM1   3240000 perm   4568 sec   (709 perm/sec)   p_kst 1.543210e-06   p_cons 2.511244e-01   p_joint 1.543210e-06

Joint ci ratio: 1.600332e+00	ci left: 4.995345e-07	ci right 3.590252e-06	k: 5	n:3250000
Cons ci ratio: 3.755202e-03	ci left: 2.506280e-01	ci right 2.515712e-01	k: 816073	n:3250000
KS ci ratio: 1.600332e+00	ci left: 4.995345e-07	ci right 3.590252e-06	k: 5	n:3250000
CARM1   3250000 perm   4595 sec   (707 perm/sec)   p_kst 1.538462e-06   p_cons 2.510994e-01   p_joint 1.538462e-06

Joint ci ratio: 1.600332e+00	ci left: 4.980021e-07	ci right 3.579239e-06	k: 5	n:3260000
Cons ci ratio: 3.749487e-03	ci left: 2.506238e-01	ci right 2.515656e-01	k: 818568	n:3260000
KS ci ratio: 1.600332e+00	ci left: 4.980021e-07	ci right 3.579239e-06	k: 5	n:3260000
CARM1   3260000 perm   4621 sec   (705 perm/sec)   p_kst 1.533742e-06   p_cons 2.510945e-01   p_joint 1.533742e-06

Joint ci ratio: 1.600332e+00	ci left: 4.964792e-07	ci right 3.568294e-06	k: 5	n:3270000
Cons ci ratio: 3.743977e-03	ci left: 2.506016e-01	ci right 2.515419e-01	k: 821004	n:3270000
KS ci ratio: 1.600332e+00	ci left: 4.964792e-07	ci right 3.568294e-06	k: 5	n:3270000
CARM1   3270000 perm   4647 sec   (704 perm/sec)   p_kst 1.529052e-06   p_cons 2.510716e-01   p_joint 1.529052e-06

Joint ci ratio: 1.600332e+00	ci left: 4.949655e-07	ci right 3.557415e-06	k: 5	n:3280000
Cons ci ratio: 3.738225e-03	ci left: 2.506064e-01	ci right 2.515453e-01	k: 823528	n:3280000
KS ci ratio: 1.600332e+00	ci left: 4.949655e-07	ci right 3.557415e-06	k: 5	n:3280000
CARM1   3280000 perm   4674 sec   (702 perm/sec)   p_kst 1.524390e-06   p_cons 2.510756e-01   p_joint 1.524390e-06

Joint ci ratio: 1.600332e+00	ci left: 4.934611e-07	ci right 3.546602e-06	k: 5	n:3290000
Cons ci ratio: 3.732660e-03	ci left: 2.505950e-01	ci right 2.515325e-01	k: 825999	n:3290000
KS ci ratio: 1.600332e+00	ci left: 4.934611e-07	ci right 3.546602e-06	k: 5	n:3290000
CARM1   3290000 perm   4700 sec   (700 perm/sec)   p_kst 1.519757e-06   p_cons 2.510635e-01   p_joint 1.519757e-06

Joint ci ratio: 1.600332e+00	ci left: 4.919658e-07	ci right 3.535855e-06	k: 5	n:3300000
Cons ci ratio: 3.726900e-03	ci left: 2.506058e-01	ci right 2.515419e-01	k: 828543	n:3300000
KS ci ratio: 1.600332e+00	ci left: 4.919658e-07	ci right 3.535855e-06	k: 5	n:3300000
CARM1   3300000 perm   4727 sec   (698 perm/sec)   p_kst 1.515152e-06   p_cons 2.510736e-01   p_joint 1.515152e-06

Joint ci ratio: 1.600332e+00	ci left: 4.904794e-07	ci right 3.525172e-06	k: 5	n:3310000
Cons ci ratio: 3.721113e-03	ci left: 2.506220e-01	ci right 2.515566e-01	k: 831105	n:3310000
KS ci ratio: 1.600332e+00	ci left: 4.904794e-07	ci right 3.525172e-06	k: 5	n:3310000
CARM1   3310000 perm   4754 sec   (696 perm/sec)   p_kst 1.510574e-06   p_cons 2.510891e-01   p_joint 1.510574e-06

Joint ci ratio: 1.600332e+00	ci left: 4.890021e-07	ci right 3.514554e-06	k: 5	n:3320000
Cons ci ratio: 3.715343e-03	ci left: 2.506390e-01	ci right 2.515723e-01	k: 833670	n:3320000
KS ci ratio: 1.600332e+00	ci left: 4.890021e-07	ci right 3.514554e-06	k: 5	n:3320000
CARM1   3320000 perm   4781 sec   (694 perm/sec)   p_kst 1.506024e-06   p_cons 2.511054e-01   p_joint 1.506024e-06

Joint ci ratio: 1.600332e+00	ci left: 4.875336e-07	ci right 3.504000e-06	k: 5	n:3330000
Cons ci ratio: 3.709841e-03	ci left: 2.506316e-01	ci right 2.515634e-01	k: 836154	n:3330000
KS ci ratio: 1.600332e+00	ci left: 4.875336e-07	ci right 3.504000e-06	k: 5	n:3330000
CARM1   3330000 perm   4807 sec   (693 perm/sec)   p_kst 1.501502e-06   p_cons 2.510973e-01   p_joint 1.501502e-06

Joint ci ratio: 1.600332e+00	ci left: 4.860739e-07	ci right 3.493509e-06	k: 5	n:3340000
Cons ci ratio: 3.704463e-03	ci left: 2.506141e-01	ci right 2.515445e-01	k: 838604	n:3340000
KS ci ratio: 1.600332e+00	ci left: 4.860739e-07	ci right 3.493509e-06	k: 5	n:3340000
CARM1   3340000 perm   4835 sec   (691 perm/sec)   p_kst 1.497006e-06   p_cons 2.510790e-01   p_joint 1.497006e-06

Joint ci ratio: 1.600332e+00	ci left: 4.846230e-07	ci right 3.483081e-06	k: 5	n:3350000
Cons ci ratio: 3.698991e-03	ci left: 2.506086e-01	ci right 2.515375e-01	k: 841094	n:3350000
KS ci ratio: 1.600332e+00	ci left: 4.846230e-07	ci right 3.483081e-06	k: 5	n:3350000
CARM1   3350000 perm   4862 sec   (689 perm/sec)   p_kst 1.492537e-06   p_cons 2.510728e-01   p_joint 1.492537e-06

Joint ci ratio: 1.600332e+00	ci left: 4.831806e-07	ci right 3.472714e-06	k: 5	n:3360000
Cons ci ratio: 3.693546e-03	ci left: 2.506028e-01	ci right 2.515304e-01	k: 843583	n:3360000
KS ci ratio: 1.600332e+00	ci left: 4.831806e-07	ci right 3.472714e-06	k: 5	n:3360000
CARM1   3360000 perm   4890 sec   (687 perm/sec)   p_kst 1.488095e-06   p_cons 2.510664e-01   p_joint 1.488095e-06

Joint ci ratio: 1.600332e+00	ci left: 4.817469e-07	ci right 3.462410e-06	k: 5	n:3370000
Cons ci ratio: 3.688174e-03	ci left: 2.505920e-01	ci right 2.515182e-01	k: 846055	n:3370000
KS ci ratio: 1.600332e+00	ci left: 4.817469e-07	ci right 3.462410e-06	k: 5	n:3370000
CARM1   3370000 perm   4917 sec   (685 perm/sec)   p_kst 1.483680e-06   p_cons 2.510549e-01   p_joint 1.483680e-06

Joint ci ratio: 1.600332e+00	ci left: 4.803216e-07	ci right 3.452166e-06	k: 5	n:3380000
Cons ci ratio: 3.682794e-03	ci left: 2.505845e-01	ci right 2.515094e-01	k: 848538	n:3380000
KS ci ratio: 1.600332e+00	ci left: 4.803216e-07	ci right 3.452166e-06	k: 5	n:3380000
CARM1   3380000 perm   4945 sec   (684 perm/sec)   p_kst 1.479290e-06   p_cons 2.510467e-01   p_joint 1.479290e-06

Joint ci ratio: 1.600332e+00	ci left: 4.789047e-07	ci right 3.441982e-06	k: 5	n:3390000
Cons ci ratio: 3.677544e-03	ci left: 2.505662e-01	ci right 2.514897e-01	k: 850984	n:3390000
KS ci ratio: 1.600332e+00	ci left: 4.789047e-07	ci right 3.441982e-06	k: 5	n:3390000
CARM1   3390000 perm   4972 sec   (682 perm/sec)   p_kst 1.474926e-06   p_cons 2.510277e-01   p_joint 1.474926e-06

Joint ci ratio: 1.600332e+00	ci left: 4.774962e-07	ci right 3.431859e-06	k: 5	n:3400000
Cons ci ratio: 3.672164e-03	ci left: 2.505636e-01	ci right 2.514857e-01	k: 853483	n:3400000
KS ci ratio: 1.600332e+00	ci left: 4.774962e-07	ci right 3.431859e-06	k: 5	n:3400000
CARM1   3400000 perm   5000 sec   (680 perm/sec)   p_kst 1.470588e-06   p_cons 2.510244e-01   p_joint 1.470588e-06

Joint ci ratio: 1.600332e+00	ci left: 4.760959e-07	ci right 3.421795e-06	k: 5	n:3410000
Cons ci ratio: 3.666436e-03	ci left: 2.505991e-01	ci right 2.515198e-01	k: 856112	n:3410000
KS ci ratio: 1.600332e+00	ci left: 4.760959e-07	ci right 3.421795e-06	k: 5	n:3410000
CARM1   3410000 perm   5028 sec   (678 perm/sec)   p_kst 1.466276e-06   p_cons 2.510592e-01   p_joint 1.466276e-06

Joint ci ratio: 1.600332e+00	ci left: 4.747038e-07	ci right 3.411790e-06	k: 5	n:3420000
Cons ci ratio: 3.661148e-03	ci left: 2.505920e-01	ci right 2.515114e-01	k: 858596	n:3420000
KS ci ratio: 1.600332e+00	ci left: 4.747038e-07	ci right 3.411790e-06	k: 5	n:3420000
CARM1   3420000 perm   5055 sec   (677 perm/sec)   p_kst 1.461988e-06   p_cons 2.510515e-01   p_joint 1.461988e-06

Joint ci ratio: 1.600332e+00	ci left: 4.733198e-07	ci right 3.401843e-06	k: 5	n:3430000
Cons ci ratio: 3.655752e-03	ci left: 2.505983e-01	ci right 2.515164e-01	k: 861126	n:3430000
KS ci ratio: 1.600332e+00	ci left: 4.733198e-07	ci right 3.401843e-06	k: 5	n:3430000
CARM1   3430000 perm   5083 sec   (675 perm/sec)   p_kst 1.457726e-06   p_cons 2.510571e-01   p_joint 1.457726e-06

Joint ci ratio: 1.600332e+00	ci left: 4.719439e-07	ci right 3.391954e-06	k: 5	n:3440000
Cons ci ratio: 3.650459e-03	ci left: 2.505965e-01	ci right 2.515132e-01	k: 863628	n:3440000
KS ci ratio: 1.600332e+00	ci left: 4.719439e-07	ci right 3.391954e-06	k: 5	n:3440000
CARM1   3440000 perm   5111 sec   (673 perm/sec)   p_kst 1.453488e-06   p_cons 2.510547e-01   p_joint 1.453488e-06

Joint ci ratio: 1.600332e+00	ci left: 4.705759e-07	ci right 3.382122e-06	k: 5	n:3450000
Cons ci ratio: 3.644961e-03	ci left: 2.506181e-01	ci right 2.515336e-01	k: 866211	n:3450000
KS ci ratio: 1.600332e+00	ci left: 4.705759e-07	ci right 3.382122e-06	k: 5	n:3450000
CARM1   3450000 perm   5139 sec   (671 perm/sec)   p_kst 1.449275e-06   p_cons 2.510757e-01   p_joint 1.449275e-06

Joint ci ratio: 1.600332e+00	ci left: 4.692159e-07	ci right 3.372347e-06	k: 5	n:3460000
Cons ci ratio: 3.639644e-03	ci left: 2.506235e-01	ci right 2.515376e-01	k: 868738	n:3460000
KS ci ratio: 1.600332e+00	ci left: 4.692159e-07	ci right 3.372347e-06	k: 5	n:3460000
CARM1   3460000 perm   5167 sec   (670 perm/sec)   p_kst 1.445087e-06   p_cons 2.510803e-01   p_joint 1.445087e-06

Joint ci ratio: 1.600332e+00	ci left: 4.678637e-07	ci right 3.362628e-06	k: 5	n:3470000
Cons ci ratio: 3.634384e-03	ci left: 2.506254e-01	ci right 2.515382e-01	k: 871253	n:3470000
KS ci ratio: 1.600332e+00	ci left: 4.678637e-07	ci right 3.362628e-06	k: 5	n:3470000
CARM1   3470000 perm   5195 sec   (668 perm/sec)   p_kst 1.440922e-06   p_cons 2.510816e-01   p_joint 1.440922e-06

Joint ci ratio: 1.600332e+00	ci left: 4.665192e-07	ci right 3.352966e-06	k: 5	n:3480000
Cons ci ratio: 3.629338e-03	ci left: 2.506074e-01	ci right 2.515189e-01	k: 873699	n:3480000
KS ci ratio: 1.600332e+00	ci left: 4.665192e-07	ci right 3.352966e-06	k: 5	n:3480000
CARM1   3480000 perm   5224 sec   (666 perm/sec)   p_kst 1.436782e-06   p_cons 2.510629e-01   p_joint 1.436782e-06

Joint ci ratio: 1.600332e+00	ci left: 4.651825e-07	ci right 3.343358e-06	k: 5	n:3490000
Cons ci ratio: 3.624093e-03	ci left: 2.506125e-01	ci right 2.515226e-01	k: 876225	n:3490000
KS ci ratio: 1.600332e+00	ci left: 4.651825e-07	ci right 3.343358e-06	k: 5	n:3490000
CARM1   3490000 perm   5252 sec   (665 perm/sec)   p_kst 1.432665e-06   p_cons 2.510673e-01   p_joint 1.432665e-06

Joint ci ratio: 1.600332e+00	ci left: 4.638534e-07	ci right 3.333806e-06	k: 5	n:3500000
Cons ci ratio: 3.618913e-03	ci left: 2.506129e-01	ci right 2.515218e-01	k: 878735	n:3500000
KS ci ratio: 1.600332e+00	ci left: 4.638534e-07	ci right 3.333806e-06	k: 5	n:3500000
CARM1   3500000 perm   5280 sec   (663 perm/sec)   p_kst 1.428571e-06   p_cons 2.510671e-01   p_joint 1.428571e-06

Joint ci ratio: 1.600332e+00	ci left: 4.625319e-07	ci right 3.324308e-06	k: 5	n:3510000
Cons ci ratio: 3.613814e-03	ci left: 2.506074e-01	ci right 2.515150e-01	k: 881224	n:3510000
KS ci ratio: 1.600332e+00	ci left: 4.625319e-07	ci right 3.324308e-06	k: 5	n:3510000
CARM1   3510000 perm   5308 sec   (661 perm/sec)   p_kst 1.424501e-06   p_cons 2.510610e-01   p_joint 1.424501e-06

Joint ci ratio: 1.600332e+00	ci left: 4.612179e-07	ci right 3.314864e-06	k: 5	n:3520000
Cons ci ratio: 3.608542e-03	ci left: 2.506221e-01	ci right 2.515283e-01	k: 883784	n:3520000
KS ci ratio: 1.600332e+00	ci left: 4.612179e-07	ci right 3.314864e-06	k: 5	n:3520000
CARM1   3520000 perm   5337 sec   (660 perm/sec)   p_kst 1.420455e-06   p_cons 2.510750e-01   p_joint 1.420455e-06

Joint ci ratio: 1.600332e+00	ci left: 4.599113e-07	ci right 3.305473e-06	k: 5	n:3530000
Cons ci ratio: 3.603443e-03	ci left: 2.506211e-01	ci right 2.515261e-01	k: 886289	n:3530000
KS ci ratio: 1.600332e+00	ci left: 4.599113e-07	ci right 3.305473e-06	k: 5	n:3530000
CARM1   3530000 perm   5366 sec   (658 perm/sec)   p_kst 1.416431e-06   p_cons 2.510734e-01   p_joint 1.416431e-06

Joint ci ratio: 1.600332e+00	ci left: 4.586121e-07	ci right 3.296136e-06	k: 5	n:3540000
Cons ci ratio: 3.598587e-03	ci left: 2.505969e-01	ci right 2.515006e-01	k: 888712	n:3540000
KS ci ratio: 1.600332e+00	ci left: 4.586121e-07	ci right 3.296136e-06	k: 5	n:3540000
CARM1   3540000 perm   5394 sec   (656 perm/sec)   p_kst 1.412429e-06   p_cons 2.510486e-01   p_joint 1.412429e-06

Joint ci ratio: 1.600332e+00	ci left: 4.573203e-07	ci right 3.286851e-06	k: 5	n:3550000
Cons ci ratio: 3.593368e-03	ci left: 2.506129e-01	ci right 2.515154e-01	k: 891277	n:3550000
KS ci ratio: 1.600332e+00	ci left: 4.573203e-07	ci right 3.286851e-06	k: 5	n:3550000
CARM1   3550000 perm   5423 sec   (655 perm/sec)   p_kst 1.408451e-06   p_cons 2.510639e-01   p_joint 1.408451e-06

Joint ci ratio: 1.600332e+00	ci left: 4.560357e-07	ci right 3.277618e-06	k: 5	n:3560000
Cons ci ratio: 3.588550e-03	ci left: 2.505892e-01	ci right 2.514904e-01	k: 893701	n:3560000
KS ci ratio: 1.600332e+00	ci left: 4.560357e-07	ci right 3.277618e-06	k: 5	n:3560000
CARM1   3560000 perm   5451 sec   (653 perm/sec)   p_kst 1.404494e-06   p_cons 2.510396e-01   p_joint 1.404494e-06

Joint ci ratio: 1.600332e+00	ci left: 4.547582e-07	ci right 3.268437e-06	k: 5	n:3570000
Cons ci ratio: 3.583599e-03	ci left: 2.505816e-01	ci right 2.514815e-01	k: 896182	n:3570000
KS ci ratio: 1.600332e+00	ci left: 4.547582e-07	ci right 3.268437e-06	k: 5	n:3570000
CARM1   3570000 perm   5479 sec   (652 perm/sec)   p_kst 1.400560e-06   p_cons 2.510314e-01   p_joint 1.400560e-06

Joint ci ratio: 1.600332e+00	ci left: 4.534880e-07	ci right 3.259308e-06	k: 5	n:3580000
Cons ci ratio: 3.578509e-03	ci left: 2.505908e-01	ci right 2.514895e-01	k: 898723	n:3580000
KS ci ratio: 1.600332e+00	ci left: 4.534880e-07	ci right 3.259308e-06	k: 5	n:3580000
CARM1   3580000 perm   5509 sec   (650 perm/sec)   p_kst 1.396648e-06   p_cons 2.510399e-01   p_joint 1.396648e-06

Joint ci ratio: 1.600332e+00	ci left: 4.522248e-07	ci right 3.250229e-06	k: 5	n:3590000
Cons ci ratio: 3.573639e-03	ci left: 2.505791e-01	ci right 2.514764e-01	k: 901189	n:3590000
KS ci ratio: 1.600332e+00	ci left: 4.522248e-07	ci right 3.250229e-06	k: 5	n:3590000
CARM1   3590000 perm   5537 sec   (648 perm/sec)   p_kst 1.392758e-06   p_cons 2.510276e-01   p_joint 1.392758e-06

Joint ci ratio: 1.600332e+00	ci left: 4.509686e-07	ci right 3.241200e-06	k: 5	n:3600000
Cons ci ratio: 3.568697e-03	ci left: 2.505772e-01	ci right 2.514732e-01	k: 903690	n:3600000
KS ci ratio: 1.600332e+00	ci left: 4.509686e-07	ci right 3.241200e-06	k: 5	n:3600000
CARM1   3600000 perm   5566 sec   (647 perm/sec)   p_kst 1.388889e-06   p_cons 2.510250e-01   p_joint 1.388889e-06

Joint ci ratio: 1.600332e+00	ci left: 4.497194e-07	ci right 3.232222e-06	k: 5	n:3610000
Cons ci ratio: 3.563864e-03	ci left: 2.505658e-01	ci right 2.514606e-01	k: 906157	n:3610000
KS ci ratio: 1.600332e+00	ci left: 4.497194e-07	ci right 3.232222e-06	k: 5	n:3610000
CARM1   3610000 perm   5595 sec   (645 perm/sec)   p_kst 1.385042e-06   p_cons 2.510130e-01   p_joint 1.385042e-06

Joint ci ratio: 1.600332e+00	ci left: 4.484771e-07	ci right 3.223293e-06	k: 5	n:3620000
Cons ci ratio: 3.559101e-03	ci left: 2.505493e-01	ci right 2.514428e-01	k: 908605	n:3620000
KS ci ratio: 1.600332e+00	ci left: 4.484771e-07	ci right 3.223293e-06	k: 5	n:3620000
CARM1   3620000 perm   5625 sec   (644 perm/sec)   p_kst 1.381215e-06   p_cons 2.509959e-01   p_joint 1.381215e-06

Joint ci ratio: 1.600332e+00	ci left: 4.472416e-07	ci right 3.214414e-06	k: 5	n:3630000
Cons ci ratio: 3.554328e-03	ci left: 2.505359e-01	ci right 2.514282e-01	k: 911064	n:3630000
KS ci ratio: 1.600332e+00	ci left: 4.472416e-07	ci right 3.214414e-06	k: 5	n:3630000
CARM1   3630000 perm   5654 sec   (642 perm/sec)   p_kst 1.377410e-06   p_cons 2.509818e-01   p_joint 1.377410e-06

Joint ci ratio: 1.600332e+00	ci left: 4.460129e-07	ci right 3.205583e-06	k: 5	n:3640000
Cons ci ratio: 3.549353e-03	ci left: 2.505458e-01	ci right 2.514370e-01	k: 913608	n:3640000
KS ci ratio: 1.600332e+00	ci left: 4.460129e-07	ci right 3.205583e-06	k: 5	n:3640000
CARM1   3640000 perm   5683 sec   (641 perm/sec)   p_kst 1.373626e-06   p_cons 2.509912e-01   p_joint 1.373626e-06

Joint ci ratio: 1.600332e+00	ci left: 4.447909e-07	ci right 3.196800e-06	k: 5	n:3650000
Cons ci ratio: 3.544550e-03	ci left: 2.505399e-01	ci right 2.514298e-01	k: 916094	n:3650000
KS ci ratio: 1.600332e+00	ci left: 4.447909e-07	ci right 3.196800e-06	k: 5	n:3650000
CARM1   3650000 perm   5711 sec   (639 perm/sec)   p_kst 1.369863e-06   p_cons 2.509847e-01   p_joint 1.369863e-06

Joint ci ratio: 1.600332e+00	ci left: 4.435757e-07	ci right 3.188066e-06	k: 5	n:3660000
Cons ci ratio: 3.539822e-03	ci left: 2.505280e-01	ci right 2.514167e-01	k: 918558	n:3660000
KS ci ratio: 1.600332e+00	ci left: 4.435757e-07	ci right 3.188066e-06	k: 5	n:3660000
CARM1   3660000 perm   5741 sec   (638 perm/sec)   p_kst 1.366120e-06   p_cons 2.509721e-01   p_joint 1.366120e-06

Joint ci ratio: 1.600332e+00	ci left: 4.423670e-07	ci right 3.179379e-06	k: 5	n:3670000
Cons ci ratio: 3.534944e-03	ci left: 2.505341e-01	ci right 2.514216e-01	k: 921088	n:3670000
KS ci ratio: 1.600332e+00	ci left: 4.423670e-07	ci right 3.179379e-06	k: 5	n:3670000
CARM1   3670000 perm   5770 sec   (636 perm/sec)   p_kst 1.362398e-06   p_cons 2.509777e-01   p_joint 1.362398e-06

Joint ci ratio: 1.600332e+00	ci left: 4.411649e-07	ci right 3.170740e-06	k: 5	n:3680000
Cons ci ratio: 3.530280e-03	ci left: 2.505196e-01	ci right 2.514058e-01	k: 923542	n:3680000
KS ci ratio: 1.600332e+00	ci left: 4.411649e-07	ci right 3.170740e-06	k: 5	n:3680000
CARM1   3680000 perm   5800 sec   (635 perm/sec)   p_kst 1.358696e-06   p_cons 2.509625e-01   p_joint 1.358696e-06

Joint ci ratio: 1.600332e+00	ci left: 4.399694e-07	ci right 3.162147e-06	k: 5	n:3690000
Cons ci ratio: 3.525457e-03	ci left: 2.505241e-01	ci right 2.514091e-01	k: 926066	n:3690000
KS ci ratio: 1.600332e+00	ci left: 4.399694e-07	ci right 3.162147e-06	k: 5	n:3690000
CARM1   3690000 perm   5829 sec   (633 perm/sec)   p_kst 1.355014e-06   p_cons 2.509664e-01   p_joint 1.355014e-06

Joint ci ratio: 1.600332e+00	ci left: 4.387802e-07	ci right 3.153600e-06	k: 5	n:3700000
Cons ci ratio: 3.520691e-03	ci left: 2.505245e-01	ci right 2.514083e-01	k: 928575	n:3700000
KS ci ratio: 1.600332e+00	ci left: 4.387802e-07	ci right 3.153600e-06	k: 5	n:3700000
CARM1   3700000 perm   5859 sec   (632 perm/sec)   p_kst 1.351351e-06   p_cons 2.509662e-01   p_joint 1.351351e-06

Joint ci ratio: 1.481619e+00	ci left: 5.935027e-07	ci right 3.520071e-06	k: 6	n:3710000
Cons ci ratio: 3.515887e-03	ci left: 2.505311e-01	ci right 2.514138e-01	k: 931107	n:3710000
KS ci ratio: 1.481619e+00	ci left: 5.935027e-07	ci right 3.520071e-06	k: 6	n:3710000
CARM1   3710000 perm   5889 sec   (630 perm/sec)   p_kst 1.617251e-06   p_cons 2.509722e-01   p_joint 1.617251e-06

Joint ci ratio: 1.481619e+00	ci left: 5.919073e-07	ci right 3.510608e-06	k: 6	n:3720000
Cons ci ratio: 3.511120e-03	ci left: 2.505358e-01	ci right 2.514173e-01	k: 933632	n:3720000
KS ci ratio: 1.481619e+00	ci left: 5.919073e-07	ci right 3.510608e-06	k: 6	n:3720000
CARM1   3720000 perm   5919 sec   (629 perm/sec)   p_kst 1.612903e-06   p_cons 2.509763e-01   p_joint 1.612903e-06

Joint ci ratio: 1.481619e+00	ci left: 5.903204e-07	ci right 3.501196e-06	k: 6	n:3730000
Cons ci ratio: 3.506414e-03	ci left: 2.505359e-01	ci right 2.514162e-01	k: 936140	n:3730000
KS ci ratio: 1.481619e+00	ci left: 5.903204e-07	ci right 3.501196e-06	k: 6	n:3730000
CARM1   3730000 perm   5949 sec   (627 perm/sec)   p_kst 1.608579e-06   p_cons 2.509759e-01   p_joint 1.608579e-06

Joint ci ratio: 1.481619e+00	ci left: 5.887420e-07	ci right 3.491835e-06	k: 6	n:3740000
Cons ci ratio: 3.501601e-03	ci left: 2.505497e-01	ci right 2.514288e-01	k: 938699	n:3740000
KS ci ratio: 1.481619e+00	ci left: 5.887420e-07	ci right 3.491835e-06	k: 6	n:3740000
CARM1   3740000 perm   5979 sec   (626 perm/sec)   p_kst 1.604278e-06   p_cons 2.509890e-01   p_joint 1.604278e-06

Joint ci ratio: 1.481619e+00	ci left: 5.871720e-07	ci right 3.482523e-06	k: 6	n:3750000
Cons ci ratio: 3.496839e-03	ci left: 2.505599e-01	ci right 2.514378e-01	k: 941245	n:3750000
KS ci ratio: 1.481619e+00	ci left: 5.871720e-07	ci right 3.482523e-06	k: 6	n:3750000
CARM1   3750000 perm   6009 sec   (624 perm/sec)   p_kst 1.600000e-06   p_cons 2.509987e-01   p_joint 1.600000e-06

Joint ci ratio: 1.481619e+00	ci left: 5.856104e-07	ci right 3.473261e-06	k: 6	n:3760000
Cons ci ratio: 3.492115e-03	ci left: 2.505682e-01	ci right 2.514450e-01	k: 943784	n:3760000
KS ci ratio: 1.481619e+00	ci left: 5.856104e-07	ci right 3.473261e-06	k: 6	n:3760000
CARM1   3760000 perm   6039 sec   (623 perm/sec)   p_kst 1.595745e-06   p_cons 2.510064e-01   p_joint 1.595745e-06

Joint ci ratio: 1.481619e+00	ci left: 5.840570e-07	ci right 3.464048e-06	k: 6	n:3770000
Cons ci ratio: 3.487411e-03	ci left: 2.505762e-01	ci right 2.514518e-01	k: 946322	n:3770000
KS ci ratio: 1.481619e+00	ci left: 5.840570e-07	ci right 3.464048e-06	k: 6	n:3770000
CARM1   3770000 perm   6069 sec   (621 perm/sec)   p_kst 1.591512e-06   p_cons 2.510138e-01   p_joint 1.591512e-06

Joint ci ratio: 1.481619e+00	ci left: 5.825119e-07	ci right 3.454884e-06	k: 6	n:3780000
Cons ci ratio: 3.482558e-03	ci left: 2.506024e-01	ci right 2.514769e-01	k: 948929	n:3780000
KS ci ratio: 1.481619e+00	ci left: 5.825119e-07	ci right 3.454884e-06	k: 6	n:3780000
CARM1   3780000 perm   6098 sec   (620 perm/sec)   p_kst 1.587302e-06   p_cons 2.510394e-01   p_joint 1.587302e-06

Joint ci ratio: 1.481619e+00	ci left: 5.809750e-07	ci right 3.445768e-06	k: 6	n:3790000
Cons ci ratio: 3.477979e-03	ci left: 2.506010e-01	ci right 2.514743e-01	k: 951432	n:3790000
KS ci ratio: 1.481619e+00	ci left: 5.809750e-07	ci right 3.445768e-06	k: 6	n:3790000
CARM1   3790000 perm   6129 sec   (618 perm/sec)   p_kst 1.583113e-06   p_cons 2.510375e-01   p_joint 1.583113e-06

Joint ci ratio: 1.481619e+00	ci left: 5.794461e-07	ci right 3.436700e-06	k: 6	n:3800000
Cons ci ratio: 3.473223e-03	ci left: 2.506207e-01	ci right 2.514929e-01	k: 954015	n:3800000
KS ci ratio: 1.481619e+00	ci left: 5.794461e-07	ci right 3.436700e-06	k: 6	n:3800000
CARM1   3800000 perm   6160 sec   (617 perm/sec)   p_kst 1.578947e-06   p_cons 2.510566e-01   p_joint 1.578947e-06

Joint ci ratio: 1.481619e+00	ci left: 5.779252e-07	ci right 3.427680e-06	k: 6	n:3810000
Cons ci ratio: 3.468566e-03	ci left: 2.506316e-01	ci right 2.515027e-01	k: 956565	n:3810000
KS ci ratio: 1.481619e+00	ci left: 5.779252e-07	ci right 3.427680e-06	k: 6	n:3810000
CARM1   3810000 perm   6191 sec   (615 perm/sec)   p_kst 1.574803e-06   p_cons 2.510669e-01   p_joint 1.574803e-06

Joint ci ratio: 1.481619e+00	ci left: 5.764123e-07	ci right 3.418707e-06	k: 6	n:3820000
Cons ci ratio: 3.463972e-03	ci left: 2.506377e-01	ci right 2.515077e-01	k: 959097	n:3820000
KS ci ratio: 1.481619e+00	ci left: 5.764123e-07	ci right 3.418707e-06	k: 6	n:3820000
CARM1   3820000 perm   6221 sec   (614 perm/sec)   p_kst 1.570681e-06   p_cons 2.510725e-01   p_joint 1.570681e-06

Joint ci ratio: 1.481619e+00	ci left: 5.749073e-07	ci right 3.409781e-06	k: 6	n:3830000
Cons ci ratio: 3.459501e-03	ci left: 2.506324e-01	ci right 2.515012e-01	k: 961585	n:3830000
KS ci ratio: 1.481619e+00	ci left: 5.749073e-07	ci right 3.409781e-06	k: 6	n:3830000
CARM1   3830000 perm   6251 sec   (613 perm/sec)   p_kst 1.566580e-06   p_cons 2.510666e-01   p_joint 1.566580e-06

Joint ci ratio: 1.481619e+00	ci left: 5.734102e-07	ci right 3.400902e-06	k: 6	n:3840000
Cons ci ratio: 3.455096e-03	ci left: 2.506218e-01	ci right 2.514895e-01	k: 964053	n:3840000
KS ci ratio: 1.481619e+00	ci left: 5.734102e-07	ci right 3.400902e-06	k: 6	n:3840000
CARM1   3840000 perm   6282 sec   (611 perm/sec)   p_kst 1.562500e-06   p_cons 2.510555e-01   p_joint 1.562500e-06

Joint ci ratio: 1.481619e+00	ci left: 5.719208e-07	ci right 3.392068e-06	k: 6	n:3850000
Cons ci ratio: 3.450431e-03	ci left: 2.506415e-01	ci right 2.515080e-01	k: 966637	n:3850000
KS ci ratio: 1.481619e+00	ci left: 5.719208e-07	ci right 3.392068e-06	k: 6	n:3850000
CARM1   3850000 perm   6313 sec   (610 perm/sec)   p_kst 1.558442e-06   p_cons 2.510745e-01   p_joint 1.558442e-06

Joint ci ratio: 1.481619e+00	ci left: 5.704391e-07	ci right 3.383280e-06	k: 6	n:3860000
Cons ci ratio: 3.445711e-03	ci left: 2.506690e-01	ci right 2.515345e-01	k: 969252	n:3860000
KS ci ratio: 1.481619e+00	ci left: 5.704391e-07	ci right 3.383280e-06	k: 6	n:3860000
CARM1   3860000 perm   6344 sec   (608 perm/sec)   p_kst 1.554404e-06   p_cons 2.511016e-01   p_joint 1.554404e-06

Joint ci ratio: 1.481619e+00	ci left: 5.689651e-07	ci right 3.374538e-06	k: 6	n:3870000
Cons ci ratio: 3.441268e-03	ci left: 2.506683e-01	ci right 2.515326e-01	k: 971758	n:3870000
KS ci ratio: 1.481619e+00	ci left: 5.689651e-07	ci right 3.374538e-06	k: 6	n:3870000
CARM1   3870000 perm   6375 sec   (607 perm/sec)   p_kst 1.550388e-06   p_cons 2.511003e-01   p_joint 1.550388e-06

Joint ci ratio: 1.481619e+00	ci left: 5.674987e-07	ci right 3.365841e-06	k: 6	n:3880000
Cons ci ratio: 3.436866e-03	ci left: 2.506650e-01	ci right 2.515282e-01	k: 974254	n:3880000
KS ci ratio: 1.481619e+00	ci left: 5.674987e-07	ci right 3.365841e-06	k: 6	n:3880000
CARM1   3880000 perm   6406 sec   (606 perm/sec)   p_kst 1.546392e-06   p_cons 2.510964e-01   p_joint 1.546392e-06

Joint ci ratio: 1.481619e+00	ci left: 5.660399e-07	ci right 3.357188e-06	k: 6	n:3890000
Cons ci ratio: 3.432460e-03	ci left: 2.506640e-01	ci right 2.515261e-01	k: 976759	n:3890000
KS ci ratio: 1.481619e+00	ci left: 5.660399e-07	ci right 3.357188e-06	k: 6	n:3890000
CARM1   3890000 perm   6438 sec   (604 perm/sec)   p_kst 1.542416e-06   p_cons 2.510949e-01   p_joint 1.542416e-06

Joint ci ratio: 1.481619e+00	ci left: 5.645885e-07	ci right 3.348580e-06	k: 6	n:3900000
Cons ci ratio: 3.428061e-03	ci left: 2.506640e-01	ci right 2.515250e-01	k: 979268	n:3900000
KS ci ratio: 1.481619e+00	ci left: 5.645885e-07	ci right 3.348580e-06	k: 6	n:3900000
CARM1   3900000 perm   6469 sec   (603 perm/sec)   p_kst 1.538462e-06   p_cons 2.510944e-01   p_joint 1.538462e-06

Joint ci ratio: 1.481619e+00	ci left: 5.631445e-07	ci right 3.340016e-06	k: 6	n:3910000
Cons ci ratio: 3.423744e-03	ci left: 2.506569e-01	ci right 2.515168e-01	k: 981749	n:3910000
KS ci ratio: 1.481619e+00	ci left: 5.631445e-07	ci right 3.340016e-06	k: 6	n:3910000
CARM1   3910000 perm   6501 sec   (601 perm/sec)   p_kst 1.534527e-06   p_cons 2.510867e-01   p_joint 1.534527e-06

Joint ci ratio: 1.481619e+00	ci left: 5.617079e-07	ci right 3.331495e-06	k: 6	n:3920000
Cons ci ratio: 3.419281e-03	ci left: 2.506677e-01	ci right 2.515265e-01	k: 984300	n:3920000
KS ci ratio: 1.481619e+00	ci left: 5.617079e-07	ci right 3.331495e-06	k: 6	n:3920000
CARM1   3920000 perm   6534 sec   (600 perm/sec)   p_kst 1.530612e-06   p_cons 2.510969e-01   p_joint 1.530612e-06

Joint ci ratio: 1.481619e+00	ci left: 5.602786e-07	ci right 3.323018e-06	k: 6	n:3930000
Cons ci ratio: 3.415041e-03	ci left: 2.506558e-01	ci right 2.515135e-01	k: 986762	n:3930000
KS ci ratio: 1.481619e+00	ci left: 5.602786e-07	ci right 3.323018e-06	k: 6	n:3930000
CARM1   3930000 perm   6566 sec   (599 perm/sec)   p_kst 1.526718e-06   p_cons 2.510845e-01   p_joint 1.526718e-06

Joint ci ratio: 1.481619e+00	ci left: 5.588566e-07	ci right 3.314584e-06	k: 6	n:3940000
Cons ci ratio: 3.410762e-03	ci left: 2.506501e-01	ci right 2.515067e-01	k: 989248	n:3940000
KS ci ratio: 1.481619e+00	ci left: 5.588566e-07	ci right 3.314584e-06	k: 6	n:3940000
CARM1   3940000 perm   6598 sec   (597 perm/sec)   p_kst 1.522843e-06   p_cons 2.510782e-01   p_joint 1.522843e-06

Joint ci ratio: 1.481619e+00	ci left: 5.574418e-07	ci right 3.306193e-06	k: 6	n:3950000
Cons ci ratio: 3.406363e-03	ci left: 2.506593e-01	ci right 2.515148e-01	k: 991793	n:3950000
KS ci ratio: 1.481619e+00	ci left: 5.574418e-07	ci right 3.306193e-06	k: 6	n:3950000
CARM1   3950000 perm   6629 sec   (596 perm/sec)   p_kst 1.518987e-06   p_cons 2.510868e-01   p_joint 1.518987e-06

Joint ci ratio: 1.481619e+00	ci left: 5.560341e-07	ci right 3.297844e-06	k: 6	n:3960000
Cons ci ratio: 3.401982e-03	ci left: 2.506684e-01	ci right 2.515229e-01	k: 994338	n:3960000
KS ci ratio: 1.481619e+00	ci left: 5.560341e-07	ci right 3.297844e-06	k: 6	n:3960000
CARM1   3960000 perm   6661 sec   (595 perm/sec)   p_kst 1.515152e-06   p_cons 2.510955e-01   p_joint 1.515152e-06

Joint ci ratio: 1.481619e+00	ci left: 5.546335e-07	ci right 3.289537e-06	k: 6	n:3970000
Cons ci ratio: 3.397669e-03	ci left: 2.506717e-01	ci right 2.515251e-01	k: 996860	n:3970000
KS ci ratio: 1.481619e+00	ci left: 5.546335e-07	ci right 3.289537e-06	k: 6	n:3970000
CARM1   3970000 perm   6693 sec   (593 perm/sec)   p_kst 1.511335e-06   p_cons 2.510982e-01   p_joint 1.511335e-06

Joint ci ratio: 1.481619e+00	ci left: 5.532400e-07	ci right 3.281272e-06	k: 6	n:3980000
Cons ci ratio: 3.393543e-03	ci left: 2.506562e-01	ci right 2.515085e-01	k: 999307	n:3980000
KS ci ratio: 1.481619e+00	ci left: 5.532400e-07	ci right 3.281272e-06	k: 6	n:3980000
CARM1   3980000 perm   6724 sec   (592 perm/sec)   p_kst 1.507538e-06   p_cons 2.510822e-01   p_joint 1.507538e-06

Joint ci ratio: 1.481619e+00	ci left: 5.518534e-07	ci right 3.273048e-06	k: 6	n:3990000
Cons ci ratio: 3.389245e-03	ci left: 2.506615e-01	ci right 2.515128e-01	k: 1001837	n:3990000
KS ci ratio: 1.481619e+00	ci left: 5.518534e-07	ci right 3.273048e-06	k: 6	n:3990000
CARM1   3990000 perm   6756 sec   (591 perm/sec)   p_kst 1.503759e-06   p_cons 2.510870e-01   p_joint 1.503759e-06

Joint ci ratio: 1.481619e+00	ci left: 5.504738e-07	ci right 3.264866e-06	k: 6	n:4000000
Cons ci ratio: 3.385160e-03	ci left: 2.506449e-01	ci right 2.514950e-01	k: 1004279	n:4000000
KS ci ratio: 1.481619e+00	ci left: 5.504738e-07	ci right 3.264866e-06	k: 6	n:4000000
CARM1   4000000 perm   6787 sec   (589 perm/sec)   p_kst 1.500000e-06   p_cons 2.510697e-01   p_joint 1.500000e-06

Joint ci ratio: 1.481619e+00	ci left: 5.491010e-07	ci right 3.256724e-06	k: 6	n:4010000
Cons ci ratio: 3.380999e-03	ci left: 2.506385e-01	ci right 2.514876e-01	k: 1006762	n:4010000
KS ci ratio: 1.481619e+00	ci left: 5.491010e-07	ci right 3.256724e-06	k: 6	n:4010000
CARM1   4010000 perm   6819 sec   (588 perm/sec)   p_kst 1.496259e-06   p_cons 2.510628e-01   p_joint 1.496259e-06

Joint ci ratio: 1.481619e+00	ci left: 5.477351e-07	ci right 3.248623e-06	k: 6	n:4020000
Cons ci ratio: 3.376826e-03	ci left: 2.506351e-01	ci right 2.514831e-01	k: 1009257	n:4020000
KS ci ratio: 1.481619e+00	ci left: 5.477351e-07	ci right 3.248623e-06	k: 6	n:4020000
CARM1   4020000 perm   6851 sec   (587 perm/sec)   p_kst 1.492537e-06   p_cons 2.510590e-01   p_joint 1.492537e-06

Joint ci ratio: 1.481619e+00	ci left: 5.463759e-07	ci right 3.240561e-06	k: 6	n:4030000
Cons ci ratio: 3.372539e-03	ci left: 2.506462e-01	ci right 2.514931e-01	k: 1011810	n:4030000
KS ci ratio: 1.481619e+00	ci left: 5.463759e-07	ci right 3.240561e-06	k: 6	n:4030000
CARM1   4030000 perm   6883 sec   (585 perm/sec)   p_kst 1.488834e-06   p_cons 2.510695e-01   p_joint 1.488834e-06

Joint ci ratio: 1.481619e+00	ci left: 5.450235e-07	ci right 3.232540e-06	k: 6	n:4040000
Cons ci ratio: 3.368440e-03	ci left: 2.506381e-01	ci right 2.514840e-01	k: 1014286	n:4040000
KS ci ratio: 1.481619e+00	ci left: 5.450235e-07	ci right 3.232540e-06	k: 6	n:4040000
CARM1   4040000 perm   6915 sec   (584 perm/sec)   p_kst 1.485149e-06   p_cons 2.510609e-01   p_joint 1.485149e-06

Joint ci ratio: 1.481619e+00	ci left: 5.436778e-07	ci right 3.224559e-06	k: 6	n:4050000
Cons ci ratio: 3.364324e-03	ci left: 2.506335e-01	ci right 2.514784e-01	k: 1016776	n:4050000
KS ci ratio: 1.481619e+00	ci left: 5.436778e-07	ci right 3.224559e-06	k: 6	n:4050000
CARM1   4050000 perm   6947 sec   (583 perm/sec)   p_kst 1.481481e-06   p_cons 2.510558e-01   p_joint 1.481481e-06

Joint ci ratio: 1.481619e+00	ci left: 5.423387e-07	ci right 3.216616e-06	k: 6	n:4060000
Cons ci ratio: 3.360180e-03	ci left: 2.506339e-01	ci right 2.514778e-01	k: 1019286	n:4060000
KS ci ratio: 1.481619e+00	ci left: 5.423387e-07	ci right 3.216616e-06	k: 6	n:4060000
CARM1   4060000 perm   6980 sec   (582 perm/sec)   p_kst 1.477833e-06   p_cons 2.510557e-01   p_joint 1.477833e-06

Joint ci ratio: 1.481619e+00	ci left: 5.410061e-07	ci right 3.208713e-06	k: 6	n:4070000
Cons ci ratio: 3.356066e-03	ci left: 2.506326e-01	ci right 2.514754e-01	k: 1021789	n:4070000
KS ci ratio: 1.481619e+00	ci left: 5.410061e-07	ci right 3.208713e-06	k: 6	n:4070000
CARM1   4070000 perm   7013 sec   (580 perm/sec)   p_kst 1.474201e-06   p_cons 2.510538e-01   p_joint 1.474201e-06

Joint ci ratio: 1.481619e+00	ci left: 5.396801e-07	ci right 3.200849e-06	k: 6	n:4080000
Cons ci ratio: 3.352006e-03	ci left: 2.506269e-01	ci right 2.514686e-01	k: 1024274	n:4080000
KS ci ratio: 1.481619e+00	ci left: 5.396801e-07	ci right 3.200849e-06	k: 6	n:4080000
CARM1   4080000 perm   7045 sec   (579 perm/sec)   p_kst 1.470588e-06   p_cons 2.510475e-01   p_joint 1.470588e-06

Joint ci ratio: 1.481619e+00	ci left: 5.383606e-07	ci right 3.193023e-06	k: 6	n:4090000
Cons ci ratio: 3.347957e-03	ci left: 2.506216e-01	ci right 2.514623e-01	k: 1026761	n:4090000
KS ci ratio: 1.481619e+00	ci left: 5.383606e-07	ci right 3.193023e-06	k: 6	n:4090000
CARM1   4090000 perm   7078 sec   (578 perm/sec)   p_kst 1.466993e-06   p_cons 2.510418e-01   p_joint 1.466993e-06

Joint ci ratio: 1.481619e+00	ci left: 5.370476e-07	ci right 3.185235e-06	k: 6	n:4100000
Cons ci ratio: 3.343868e-03	ci left: 2.506225e-01	ci right 2.514622e-01	k: 1029273	n:4100000
KS ci ratio: 1.481619e+00	ci left: 5.370476e-07	ci right 3.185235e-06	k: 6	n:4100000
CARM1   4100000 perm   7111 sec   (577 perm/sec)   p_kst 1.463415e-06   p_cons 2.510422e-01   p_joint 1.463415e-06

Joint ci ratio: 1.481619e+00	ci left: 5.357409e-07	ci right 3.177485e-06	k: 6	n:4110000
Cons ci ratio: 3.339760e-03	ci left: 2.506273e-01	ci right 2.514660e-01	k: 1031801	n:4110000
KS ci ratio: 1.481619e+00	ci left: 5.357409e-07	ci right 3.177485e-06	k: 6	n:4110000
CARM1   4110000 perm   7144 sec   (575 perm/sec)   p_kst 1.459854e-06   p_cons 2.510465e-01   p_joint 1.459854e-06

Joint ci ratio: 1.481619e+00	ci left: 5.344405e-07	ci right 3.169773e-06	k: 6	n:4120000
Cons ci ratio: 3.335744e-03	ci left: 2.506233e-01	ci right 2.514610e-01	k: 1034293	n:4120000
KS ci ratio: 1.481619e+00	ci left: 5.344405e-07	ci right 3.169773e-06	k: 6	n:4120000
CARM1   4120000 perm   7177 sec   (574 perm/sec)   p_kst 1.456311e-06   p_cons 2.510420e-01   p_joint 1.456311e-06

Joint ci ratio: 1.481619e+00	ci left: 5.331465e-07	ci right 3.162098e-06	k: 6	n:4130000
Cons ci ratio: 3.331663e-03	ci left: 2.506283e-01	ci right 2.514650e-01	k: 1036822	n:4130000
KS ci ratio: 1.481619e+00	ci left: 5.331465e-07	ci right 3.162098e-06	k: 6	n:4130000
CARM1   4130000 perm   7210 sec   (573 perm/sec)   p_kst 1.452785e-06   p_cons 2.510465e-01   p_joint 1.452785e-06

Joint ci ratio: 1.481619e+00	ci left: 5.318587e-07	ci right 3.154460e-06	k: 6	n:4140000
Cons ci ratio: 3.327702e-03	ci left: 2.506215e-01	ci right 2.514571e-01	k: 1039302	n:4140000
KS ci ratio: 1.481619e+00	ci left: 5.318587e-07	ci right 3.154460e-06	k: 6	n:4140000
CARM1   4140000 perm   7243 sec   (572 perm/sec)   p_kst 1.449275e-06   p_cons 2.510391e-01   p_joint 1.449275e-06

Joint ci ratio: 1.481619e+00	ci left: 5.305771e-07	ci right 3.146859e-06	k: 6	n:4150000
Cons ci ratio: 3.323745e-03	ci left: 2.506159e-01	ci right 2.514505e-01	k: 1041787	n:4150000
KS ci ratio: 1.481619e+00	ci left: 5.305771e-07	ci right 3.146859e-06	k: 6	n:4150000
CARM1   4150000 perm   7276 sec   (570 perm/sec)   p_kst 1.445783e-06   p_cons 2.510330e-01   p_joint 1.445783e-06

Joint ci ratio: 1.481619e+00	ci left: 5.293017e-07	ci right 3.139294e-06	k: 6	n:4160000
Cons ci ratio: 3.319712e-03	ci left: 2.506204e-01	ci right 2.514540e-01	k: 1044314	n:4160000
KS ci ratio: 1.481619e+00	ci left: 5.293017e-07	ci right 3.139294e-06	k: 6	n:4160000
CARM1   4160000 perm   7309 sec   (569 perm/sec)   p_kst 1.442308e-06   p_cons 2.510370e-01   p_joint 1.442308e-06

Joint ci ratio: 1.481619e+00	ci left: 5.280324e-07	ci right 3.131766e-06	k: 6	n:4170000
Cons ci ratio: 3.315842e-03	ci left: 2.506081e-01	ci right 2.514407e-01	k: 1046771	n:4170000
KS ci ratio: 1.481619e+00	ci left: 5.280324e-07	ci right 3.131766e-06	k: 6	n:4170000
CARM1   4170000 perm   7342 sec   (568 perm/sec)   p_kst 1.438849e-06   p_cons 2.510242e-01   p_joint 1.438849e-06

Joint ci ratio: 1.481619e+00	ci left: 5.267691e-07	ci right 3.124273e-06	k: 6	n:4180000
Cons ci ratio: 3.312152e-03	ci left: 2.505770e-01	ci right 2.514085e-01	k: 1049149	n:4180000
KS ci ratio: 1.481619e+00	ci left: 5.267691e-07	ci right 3.124273e-06	k: 6	n:4180000
CARM1   4180000 perm   7376 sec   (567 perm/sec)   p_kst 1.435407e-06   p_cons 2.509926e-01   p_joint 1.435407e-06

Joint ci ratio: 1.481619e+00	ci left: 5.255119e-07	ci right 3.116817e-06	k: 6	n:4190000
Cons ci ratio: 3.308325e-03	ci left: 2.505629e-01	ci right 2.513935e-01	k: 1051598	n:4190000
KS ci ratio: 1.481619e+00	ci left: 5.255119e-07	ci right 3.116817e-06	k: 6	n:4190000
CARM1   4190000 perm   7410 sec   (565 perm/sec)   p_kst 1.431981e-06   p_cons 2.509780e-01   p_joint 1.431981e-06

Joint ci ratio: 1.481619e+00	ci left: 5.242607e-07	ci right 3.109396e-06	k: 6	n:4200000
Cons ci ratio: 3.304514e-03	ci left: 2.505487e-01	ci right 2.513783e-01	k: 1054046	n:4200000
KS ci ratio: 1.481619e+00	ci left: 5.242607e-07	ci right 3.109396e-06	k: 6	n:4200000
CARM1   4200000 perm   7443 sec   (564 perm/sec)   p_kst 1.428571e-06   p_cons 2.509633e-01   p_joint 1.428571e-06

Joint ci ratio: 1.481619e+00	ci left: 5.230154e-07	ci right 3.102010e-06	k: 6	n:4210000
Cons ci ratio: 3.300650e-03	ci left: 2.505420e-01	ci right 2.513705e-01	k: 1056525	n:4210000
KS ci ratio: 1.481619e+00	ci left: 5.230154e-07	ci right 3.102010e-06	k: 6	n:4210000
CARM1   4210000 perm   7476 sec   (563 perm/sec)   p_kst 1.425178e-06   p_cons 2.509561e-01   p_joint 1.425178e-06

Joint ci ratio: 1.481619e+00	ci left: 5.217761e-07	ci right 3.094660e-06	k: 6	n:4220000
Cons ci ratio: 3.296626e-03	ci left: 2.505551e-01	ci right 2.513827e-01	k: 1059088	n:4220000
KS ci ratio: 1.481619e+00	ci left: 5.217761e-07	ci right 3.094660e-06	k: 6	n:4220000
CARM1   4220000 perm   7510 sec   (562 perm/sec)   p_kst 1.421801e-06   p_cons 2.509687e-01   p_joint 1.421801e-06

Joint ci ratio: 1.481619e+00	ci left: 5.205426e-07	ci right 3.087344e-06	k: 6	n:4230000
Cons ci ratio: 3.292913e-03	ci left: 2.505344e-01	ci right 2.513610e-01	k: 1061508	n:4230000
KS ci ratio: 1.481619e+00	ci left: 5.205426e-07	ci right 3.087344e-06	k: 6	n:4230000
CARM1   4230000 perm   7544 sec   (561 perm/sec)   p_kst 1.418440e-06   p_cons 2.509475e-01   p_joint 1.418440e-06

Joint ci ratio: 1.481619e+00	ci left: 5.193149e-07	ci right 3.080062e-06	k: 6	n:4240000
Cons ci ratio: 3.288820e-03	ci left: 2.505586e-01	ci right 2.513842e-01	k: 1064118	n:4240000
KS ci ratio: 1.481619e+00	ci left: 5.193149e-07	ci right 3.080062e-06	k: 6	n:4240000
CARM1   4240000 perm   7578 sec   (560 perm/sec)   p_kst 1.415094e-06   p_cons 2.509712e-01   p_joint 1.415094e-06

Joint ci ratio: 1.481619e+00	ci left: 5.180929e-07	ci right 3.072815e-06	k: 6	n:4250000
Cons ci ratio: 3.285024e-03	ci left: 2.505504e-01	ci right 2.513751e-01	k: 1066591	n:4250000
KS ci ratio: 1.481619e+00	ci left: 5.180929e-07	ci right 3.072815e-06	k: 6	n:4250000
CARM1   4250000 perm   7612 sec   (558 perm/sec)   p_kst 1.411765e-06   p_cons 2.509626e-01   p_joint 1.411765e-06

Joint ci ratio: 1.481619e+00	ci left: 5.168768e-07	ci right 3.065602e-06	k: 6	n:4260000
Cons ci ratio: 3.281155e-03	ci left: 2.505522e-01	ci right 2.513759e-01	k: 1069106	n:4260000
KS ci ratio: 1.481619e+00	ci left: 5.168768e-07	ci right 3.065602e-06	k: 6	n:4260000
CARM1   4260000 perm   7646 sec   (557 perm/sec)   p_kst 1.408451e-06   p_cons 2.509638e-01   p_joint 1.408451e-06

Joint ci ratio: 1.481619e+00	ci left: 5.156663e-07	ci right 3.058422e-06	k: 6	n:4270000
Cons ci ratio: 3.277559e-03	ci left: 2.505242e-01	ci right 2.513469e-01	k: 1071494	n:4270000
KS ci ratio: 1.481619e+00	ci left: 5.156663e-07	ci right 3.058422e-06	k: 6	n:4270000
CARM1   4270000 perm   7681 sec   (556 perm/sec)   p_kst 1.405152e-06   p_cons 2.509354e-01   p_joint 1.405152e-06

Joint ci ratio: 1.481619e+00	ci left: 5.144614e-07	ci right 3.051276e-06	k: 6	n:4280000
Cons ci ratio: 3.273737e-03	ci left: 2.505237e-01	ci right 2.513454e-01	k: 1073999	n:4280000
KS ci ratio: 1.481619e+00	ci left: 5.144614e-07	ci right 3.051276e-06	k: 6	n:4280000
CARM1   4280000 perm   7715 sec   (555 perm/sec)   p_kst 1.401869e-06   p_cons 2.509343e-01   p_joint 1.401869e-06

Joint ci ratio: 1.481619e+00	ci left: 5.132622e-07	ci right 3.044164e-06	k: 6	n:4290000
Cons ci ratio: 3.269999e-03	ci left: 2.505150e-01	ci right 2.513357e-01	k: 1076469	n:4290000
KS ci ratio: 1.481619e+00	ci left: 5.132622e-07	ci right 3.044164e-06	k: 6	n:4290000
CARM1   4290000 perm   7749 sec   (554 perm/sec)   p_kst 1.398601e-06   p_cons 2.509252e-01   p_joint 1.398601e-06

Joint ci ratio: 1.481619e+00	ci left: 5.120686e-07	ci right 3.037084e-06	k: 6	n:4300000
Cons ci ratio: 3.266215e-03	ci left: 2.505131e-01	ci right 2.513329e-01	k: 1078968	n:4300000
KS ci ratio: 1.481619e+00	ci left: 5.120686e-07	ci right 3.037084e-06	k: 6	n:4300000
CARM1   4300000 perm   7784 sec   (552 perm/sec)   p_kst 1.395349e-06   p_cons 2.509228e-01   p_joint 1.395349e-06

Joint ci ratio: 1.481619e+00	ci left: 5.108805e-07	ci right 3.030038e-06	k: 6	n:4310000
Cons ci ratio: 3.262612e-03	ci left: 2.504919e-01	ci right 2.513107e-01	k: 1081384	n:4310000
KS ci ratio: 1.481619e+00	ci left: 5.108805e-07	ci right 3.030038e-06	k: 6	n:4310000
CARM1   4310000 perm   7818 sec   (551 perm/sec)   p_kst 1.392111e-06   p_cons 2.509012e-01   p_joint 1.392111e-06

Joint ci ratio: 1.481619e+00	ci left: 5.096979e-07	ci right 3.023024e-06	k: 6	n:4320000
Cons ci ratio: 3.258743e-03	ci left: 2.505028e-01	ci right 2.513207e-01	k: 1083938	n:4320000
KS ci ratio: 1.481619e+00	ci left: 5.096979e-07	ci right 3.023024e-06	k: 6	n:4320000
CARM1   4320000 perm   7852 sec   (550 perm/sec)   p_kst 1.388889e-06   p_cons 2.509116e-01   p_joint 1.388889e-06

Joint ci ratio: 1.481619e+00	ci left: 5.085208e-07	ci right 3.016042e-06	k: 6	n:4330000
Cons ci ratio: 3.254764e-03	ci left: 2.505279e-01	ci right 2.513449e-01	k: 1086554	n:4330000
KS ci ratio: 1.481619e+00	ci left: 5.085208e-07	ci right 3.016042e-06	k: 6	n:4330000
CARM1   4330000 perm   7886 sec   (549 perm/sec)   p_kst 1.385681e-06   p_cons 2.509363e-01   p_joint 1.385681e-06

Joint ci ratio: 1.481619e+00	ci left: 5.073491e-07	ci right 3.009093e-06	k: 6	n:4340000
Cons ci ratio: 3.250985e-03	ci left: 2.505316e-01	ci right 2.513476e-01	k: 1089077	n:4340000
KS ci ratio: 1.481619e+00	ci left: 5.073491e-07	ci right 3.009093e-06	k: 6	n:4340000
CARM1   4340000 perm   7921 sec   (548 perm/sec)   p_kst 1.382488e-06   p_cons 2.509394e-01   p_joint 1.382488e-06

Joint ci ratio: 1.481619e+00	ci left: 5.061828e-07	ci right 3.002175e-06	k: 6	n:4350000
Cons ci ratio: 3.247257e-03	ci left: 2.505308e-01	ci right 2.513459e-01	k: 1091581	n:4350000
KS ci ratio: 1.481619e+00	ci left: 5.061828e-07	ci right 3.002175e-06	k: 6	n:4350000
CARM1   4350000 perm   7955 sec   (547 perm/sec)   p_kst 1.379310e-06   p_cons 2.509382e-01   p_joint 1.379310e-06

Joint ci ratio: 1.481619e+00	ci left: 5.050218e-07	ci right 2.995290e-06	k: 6	n:4360000
Cons ci ratio: 3.243581e-03	ci left: 2.505254e-01	ci right 2.513396e-01	k: 1094065	n:4360000
KS ci ratio: 1.481619e+00	ci left: 5.050218e-07	ci right 2.995290e-06	k: 6	n:4360000
CARM1   4360000 perm   7990 sec   (546 perm/sec)   p_kst 1.376147e-06   p_cons 2.509323e-01   p_joint 1.376147e-06

Joint ci ratio: 1.481619e+00	ci left: 5.038661e-07	ci right 2.988436e-06	k: 6	n:4370000
Cons ci ratio: 3.239878e-03	ci left: 2.505247e-01	ci right 2.513379e-01	k: 1096569	n:4370000
KS ci ratio: 1.481619e+00	ci left: 5.038661e-07	ci right 2.988436e-06	k: 6	n:4370000
CARM1   4370000 perm   8025 sec   (545 perm/sec)   p_kst 1.372998e-06   p_cons 2.509311e-01   p_joint 1.372998e-06

Joint ci ratio: 1.481619e+00	ci left: 5.027157e-07	ci right 2.981613e-06	k: 6	n:4380000
Cons ci ratio: 3.236314e-03	ci left: 2.505093e-01	ci right 2.513216e-01	k: 1099009	n:4380000
KS ci ratio: 1.481619e+00	ci left: 5.027157e-07	ci right 2.981613e-06	k: 6	n:4380000
CARM1   4380000 perm   8060 sec   (543 perm/sec)   p_kst 1.369863e-06   p_cons 2.509153e-01   p_joint 1.369863e-06

Joint ci ratio: 1.481619e+00	ci left: 5.015706e-07	ci right 2.974821e-06	k: 6	n:4390000
Cons ci ratio: 3.232753e-03	ci left: 2.504950e-01	ci right 2.513063e-01	k: 1101453	n:4390000
KS ci ratio: 1.481619e+00	ci left: 5.015706e-07	ci right 2.974821e-06	k: 6	n:4390000
CARM1   4390000 perm   8095 sec   (542 perm/sec)   p_kst 1.366743e-06   p_cons 2.509005e-01   p_joint 1.366743e-06

Joint ci ratio: 1.481619e+00	ci left: 5.004307e-07	ci right 2.968060e-06	k: 6	n:4400000
Cons ci ratio: 3.228986e-03	ci left: 2.505061e-01	ci right 2.513165e-01	k: 1104009	n:4400000
KS ci ratio: 1.481619e+00	ci left: 5.004307e-07	ci right 2.968060e-06	k: 6	n:4400000
CARM1   4400000 perm   8130 sec   (541 perm/sec)   p_kst 1.363636e-06   p_cons 2.509111e-01   p_joint 1.363636e-06

Joint ci ratio: 1.481619e+00	ci left: 4.992959e-07	ci right 2.961330e-06	k: 6	n:4410000
Cons ci ratio: 3.225259e-03	ci left: 2.505140e-01	ci right 2.513235e-01	k: 1106551	n:4410000
KS ci ratio: 1.481619e+00	ci left: 4.992959e-07	ci right 2.961330e-06	k: 6	n:4410000
CARM1   4410000 perm   8165 sec   (540 perm/sec)   p_kst 1.360544e-06   p_cons 2.509186e-01   p_joint 1.360544e-06

Joint ci ratio: 1.481619e+00	ci left: 4.981663e-07	ci right 2.954630e-06	k: 6	n:4420000
Cons ci ratio: 3.221615e-03	ci left: 2.505138e-01	ci right 2.513223e-01	k: 1109057	n:4420000
KS ci ratio: 1.481619e+00	ci left: 4.981663e-07	ci right 2.954630e-06	k: 6	n:4420000
CARM1   4420000 perm   8201 sec   (539 perm/sec)   p_kst 1.357466e-06   p_cons 2.509179e-01   p_joint 1.357466e-06

Joint ci ratio: 1.481619e+00	ci left: 4.970417e-07	ci right 2.947960e-06	k: 6	n:4430000
Cons ci ratio: 3.217851e-03	ci left: 2.505288e-01	ci right 2.513365e-01	k: 1111631	n:4430000
KS ci ratio: 1.481619e+00	ci left: 4.970417e-07	ci right 2.947960e-06	k: 6	n:4430000
CARM1   4430000 perm   8236 sec   (538 perm/sec)   p_kst 1.354402e-06   p_cons 2.509325e-01   p_joint 1.354402e-06

Joint ci ratio: 1.481619e+00	ci left: 4.959223e-07	ci right 2.941321e-06	k: 6	n:4440000
Cons ci ratio: 3.214205e-03	ci left: 2.505317e-01	ci right 2.513385e-01	k: 1114151	n:4440000
KS ci ratio: 1.481619e+00	ci left: 4.959223e-07	ci right 2.941321e-06	k: 6	n:4440000
CARM1   4440000 perm   8272 sec   (537 perm/sec)   p_kst 1.351351e-06   p_cons 2.509349e-01   p_joint 1.351351e-06

Joint ci ratio: 1.481619e+00	ci left: 4.948079e-07	ci right 2.934711e-06	k: 6	n:4450000
Cons ci ratio: 3.210550e-03	ci left: 2.505370e-01	ci right 2.513429e-01	k: 1116682	n:4450000
KS ci ratio: 1.481619e+00	ci left: 4.948079e-07	ci right 2.934711e-06	k: 6	n:4450000
CARM1   4450000 perm   8307 sec   (536 perm/sec)   p_kst 1.348315e-06   p_cons 2.509398e-01   p_joint 1.348315e-06

Joint ci ratio: 1.385928e+00	ci left: 6.310233e-07	ci right 3.233781e-06	k: 7	n:4460000
Cons ci ratio: 3.206865e-03	ci left: 2.505472e-01	ci right 2.513522e-01	k: 1119235	n:4460000
KS ci ratio: 1.385928e+00	ci left: 6.310233e-07	ci right 3.233781e-06	k: 7	n:4460000
CARM1   4460000 perm   8344 sec   (535 perm/sec)   p_kst 1.569507e-06   p_cons 2.509496e-01   p_joint 1.569507e-06

Joint ci ratio: 1.385928e+00	ci left: 6.296116e-07	ci right 3.226547e-06	k: 7	n:4470000
Cons ci ratio: 3.203241e-03	ci left: 2.505518e-01	ci right 2.513559e-01	k: 1121763	n:4470000
KS ci ratio: 1.385928e+00	ci left: 6.296116e-07	ci right 3.226547e-06	k: 7	n:4470000
CARM1   4470000 perm   8380 sec   (533 perm/sec)   p_kst 1.565996e-06   p_cons 2.509537e-01   p_joint 1.565996e-06

Joint ci ratio: 1.385928e+00	ci left: 6.282063e-07	ci right 3.219345e-06	k: 7	n:4480000
Cons ci ratio: 3.199619e-03	ci left: 2.505575e-01	ci right 2.513607e-01	k: 1124296	n:4480000
KS ci ratio: 1.385928e+00	ci left: 6.282063e-07	ci right 3.219345e-06	k: 7	n:4480000
CARM1   4480000 perm   8415 sec   (532 perm/sec)   p_kst 1.562500e-06   p_cons 2.509589e-01   p_joint 1.562500e-06

Joint ci ratio: 1.385928e+00	ci left: 6.268071e-07	ci right 3.212174e-06	k: 7	n:4490000
Cons ci ratio: 3.196157e-03	ci left: 2.505458e-01	ci right 2.513481e-01	k: 1126751	n:4490000
KS ci ratio: 1.385928e+00	ci left: 6.268071e-07	ci right 3.212174e-06	k: 7	n:4490000
CARM1   4490000 perm   8451 sec   (531 perm/sec)   p_kst 1.559020e-06   p_cons 2.509468e-01   p_joint 1.559020e-06

Joint ci ratio: 1.385928e+00	ci left: 6.254142e-07	ci right 3.205036e-06	k: 7	n:4500000
Cons ci ratio: 3.192494e-03	ci left: 2.505592e-01	ci right 2.513606e-01	k: 1129319	n:4500000
KS ci ratio: 1.385928e+00	ci left: 6.254142e-07	ci right 3.205036e-06	k: 7	n:4500000
CARM1   4500000 perm   8487 sec   (530 perm/sec)   p_kst 1.555556e-06   p_cons 2.509598e-01   p_joint 1.555556e-06

Joint ci ratio: 1.385928e+00	ci left: 6.240275e-07	ci right 3.197930e-06	k: 7	n:4510000
Cons ci ratio: 3.188737e-03	ci left: 2.505850e-01	ci right 2.513856e-01	k: 1131943	n:4510000
KS ci ratio: 1.385928e+00	ci left: 6.240275e-07	ci right 3.197930e-06	k: 7	n:4510000
CARM1   4510000 perm   8523 sec   (529 perm/sec)   p_kst 1.552106e-06   p_cons 2.509851e-01   p_joint 1.552106e-06

Joint ci ratio: 1.385928e+00	ci left: 6.226469e-07	ci right 3.190855e-06	k: 7	n:4520000
Cons ci ratio: 3.185183e-03	ci left: 2.505884e-01	ci right 2.513880e-01	k: 1134466	n:4520000
KS ci ratio: 1.385928e+00	ci left: 6.226469e-07	ci right 3.190855e-06	k: 7	n:4520000
CARM1   4520000 perm   8559 sec   (528 perm/sec)   p_kst 1.548673e-06   p_cons 2.509881e-01   p_joint 1.548673e-06

Joint ci ratio: 1.385928e+00	ci left: 6.212724e-07	ci right 3.183811e-06	k: 7	n:4530000
Cons ci ratio: 3.181503e-03	ci left: 2.506081e-01	ci right 2.514068e-01	k: 1137063	n:4530000
KS ci ratio: 1.385928e+00	ci left: 6.212724e-07	ci right 3.183811e-06	k: 7	n:4530000
CARM1   4530000 perm   8595 sec   (527 perm/sec)   p_kst 1.545254e-06   p_cons 2.510073e-01   p_joint 1.545254e-06

Joint ci ratio: 1.385928e+00	ci left: 6.199040e-07	ci right 3.176798e-06	k: 7	n:4540000
Cons ci ratio: 3.178066e-03	ci left: 2.506003e-01	ci right 2.513982e-01	k: 1139536	n:4540000
KS ci ratio: 1.385928e+00	ci left: 6.199040e-07	ci right 3.176798e-06	k: 7	n:4540000
CARM1   4540000 perm   8632 sec   (526 perm/sec)   p_kst 1.541850e-06   p_cons 2.509991e-01   p_joint 1.541850e-06

Joint ci ratio: 1.385928e+00	ci left: 6.185415e-07	ci right 3.169816e-06	k: 7	n:4550000
Cons ci ratio: 3.174620e-03	ci left: 2.505951e-01	ci right 2.513921e-01	k: 1142020	n:4550000
KS ci ratio: 1.385928e+00	ci left: 6.185415e-07	ci right 3.169816e-06	k: 7	n:4550000
CARM1   4550000 perm   8667 sec   (525 perm/sec)   p_kst 1.538462e-06   p_cons 2.509934e-01   p_joint 1.538462e-06

Joint ci ratio: 1.385928e+00	ci left: 6.171851e-07	ci right 3.162865e-06	k: 7	n:4560000
Cons ci ratio: 3.171209e-03	ci left: 2.505870e-01	ci right 2.513831e-01	k: 1144491	n:4560000
KS ci ratio: 1.385928e+00	ci left: 6.171851e-07	ci right 3.162865e-06	k: 7	n:4560000
CARM1   4560000 perm   8704 sec   (524 perm/sec)   p_kst 1.535088e-06   p_cons 2.509849e-01   p_joint 1.535088e-06

Joint ci ratio: 1.385928e+00	ci left: 6.158346e-07	ci right 3.155944e-06	k: 7	n:4570000
Cons ci ratio: 3.167520e-03	ci left: 2.506132e-01	ci right 2.514085e-01	k: 1147119	n:4570000
KS ci ratio: 1.385928e+00	ci left: 6.158346e-07	ci right 3.155944e-06	k: 7	n:4570000
CARM1   4570000 perm   8741 sec   (523 perm/sec)   p_kst 1.531729e-06   p_cons 2.510107e-01   p_joint 1.531729e-06

Joint ci ratio: 1.385928e+00	ci left: 6.144900e-07	ci right 3.149053e-06	k: 7	n:4580000
Cons ci ratio: 3.164033e-03	ci left: 2.506169e-01	ci right 2.514113e-01	k: 1149644	n:4580000
KS ci ratio: 1.385928e+00	ci left: 6.144900e-07	ci right 3.149053e-06	k: 7	n:4580000
CARM1   4580000 perm   8777 sec   (522 perm/sec)   p_kst 1.528384e-06   p_cons 2.510140e-01   p_joint 1.528384e-06

Joint ci ratio: 1.385928e+00	ci left: 6.131512e-07	ci right 3.142193e-06	k: 7	n:4590000
Cons ci ratio: 3.160462e-03	ci left: 2.506319e-01	ci right 2.514255e-01	k: 1152221	n:4590000
KS ci ratio: 1.385928e+00	ci left: 6.131512e-07	ci right 3.142193e-06	k: 7	n:4590000
CARM1   4590000 perm   8814 sec   (521 perm/sec)   p_kst 1.525054e-06   p_cons 2.510285e-01   p_joint 1.525054e-06

Joint ci ratio: 1.385928e+00	ci left: 6.118183e-07	ci right 3.135362e-06	k: 7	n:4600000
Cons ci ratio: 3.157036e-03	ci left: 2.506310e-01	ci right 2.514237e-01	k: 1154725	n:4600000
KS ci ratio: 1.385928e+00	ci left: 6.118183e-07	ci right 3.135362e-06	k: 7	n:4600000
CARM1   4600000 perm   8851 sec   (520 perm/sec)   p_kst 1.521739e-06   p_cons 2.510272e-01   p_joint 1.521739e-06

Joint ci ratio: 1.385928e+00	ci left: 6.104911e-07	ci right 3.128560e-06	k: 7	n:4610000
Cons ci ratio: 3.153569e-03	ci left: 2.506363e-01	ci right 2.514282e-01	k: 1157258	n:4610000
KS ci ratio: 1.385928e+00	ci left: 6.104911e-07	ci right 3.128560e-06	k: 7	n:4610000
CARM1   4610000 perm   8888 sec   (519 perm/sec)   p_kst 1.518438e-06   p_cons 2.510321e-01   p_joint 1.518438e-06

Joint ci ratio: 1.385928e+00	ci left: 6.091697e-07	ci right 3.121789e-06	k: 7	n:4620000
Cons ci ratio: 3.150149e-03	ci left: 2.506373e-01	ci right 2.514283e-01	k: 1159771	n:4620000
KS ci ratio: 1.385928e+00	ci left: 6.091697e-07	ci right 3.121789e-06	k: 7	n:4620000
CARM1   4620000 perm   8925 sec   (518 perm/sec)   p_kst 1.515152e-06   p_cons 2.510327e-01   p_joint 1.515152e-06

Joint ci ratio: 1.385928e+00	ci left: 6.078540e-07	ci right 3.115046e-06	k: 7	n:4630000
Cons ci ratio: 3.146751e-03	ci left: 2.506371e-01	ci right 2.514272e-01	k: 1162278	n:4630000
KS ci ratio: 1.385928e+00	ci left: 6.078540e-07	ci right 3.115046e-06	k: 7	n:4630000
CARM1   4630000 perm   8962 sec   (517 perm/sec)   p_kst 1.511879e-06   p_cons 2.510320e-01   p_joint 1.511879e-06

Joint ci ratio: 1.385928e+00	ci left: 6.065440e-07	ci right 3.108333e-06	k: 7	n:4640000
Cons ci ratio: 3.143390e-03	ci left: 2.506337e-01	ci right 2.514230e-01	k: 1164771	n:4640000
KS ci ratio: 1.385928e+00	ci left: 6.065440e-07	ci right 3.108333e-06	k: 7	n:4640000
CARM1   4640000 perm   8999 sec   (516 perm/sec)   p_kst 1.508621e-06   p_cons 2.510282e-01   p_joint 1.508621e-06

Joint ci ratio: 1.385928e+00	ci left: 6.052396e-07	ci right 3.101648e-06	k: 7	n:4650000
Cons ci ratio: 3.139994e-03	ci left: 2.506358e-01	ci right 2.514243e-01	k: 1167289	n:4650000
KS ci ratio: 1.385928e+00	ci left: 6.052396e-07	ci right 3.101648e-06	k: 7	n:4650000
CARM1   4650000 perm   9036 sec   (515 perm/sec)   p_kst 1.505376e-06   p_cons 2.510299e-01   p_joint 1.505376e-06

Joint ci ratio: 1.385928e+00	ci left: 6.039408e-07	ci right 3.094992e-06	k: 7	n:4660000
Cons ci ratio: 3.136681e-03	ci left: 2.506293e-01	ci right 2.514169e-01	k: 1169767	n:4660000
KS ci ratio: 1.385928e+00	ci left: 6.039408e-07	ci right 3.094992e-06	k: 7	n:4660000
CARM1   4660000 perm   9074 sec   (514 perm/sec)   p_kst 1.502146e-06   p_cons 2.510230e-01   p_joint 1.502146e-06

Joint ci ratio: 1.385928e+00	ci left: 6.026475e-07	ci right 3.088365e-06	k: 7	n:4670000
Cons ci ratio: 3.133236e-03	ci left: 2.506400e-01	ci right 2.514267e-01	k: 1172325	n:4670000
KS ci ratio: 1.385928e+00	ci left: 6.026475e-07	ci right 3.088365e-06	k: 7	n:4670000
CARM1   4670000 perm   9111 sec   (513 perm/sec)   p_kst 1.498929e-06   p_cons 2.510332e-01   p_joint 1.498929e-06

Joint ci ratio: 1.385928e+00	ci left: 6.013598e-07	ci right 3.081766e-06	k: 7	n:4680000
Cons ci ratio: 3.129885e-03	ci left: 2.506405e-01	ci right 2.514264e-01	k: 1174836	n:4680000
KS ci ratio: 1.385928e+00	ci left: 6.013598e-07	ci right 3.081766e-06	k: 7	n:4680000
CARM1   4680000 perm   9151 sec   (511 perm/sec)   p_kst 1.495726e-06   p_cons 2.510333e-01   p_joint 1.495726e-06

Joint ci ratio: 1.385928e+00	ci left: 6.000776e-07	ci right 3.075195e-06	k: 7	n:4690000
Cons ci ratio: 3.126425e-03	ci left: 2.506556e-01	ci right 2.514407e-01	k: 1177415	n:4690000
KS ci ratio: 1.385928e+00	ci left: 6.000776e-07	ci right 3.075195e-06	k: 7	n:4690000
CARM1   4690000 perm   9188 sec   (510 perm/sec)   p_kst 1.492537e-06   p_cons 2.510480e-01   p_joint 1.492537e-06

Joint ci ratio: 1.385928e+00	ci left: 5.988009e-07	ci right 3.068652e-06	k: 7	n:4700000
Cons ci ratio: 3.123008e-03	ci left: 2.506667e-01	ci right 2.514510e-01	k: 1179976	n:4700000
KS ci ratio: 1.385928e+00	ci left: 5.988009e-07	ci right 3.068652e-06	k: 7	n:4700000
CARM1   4700000 perm   9225 sec   (509 perm/sec)   p_kst 1.489362e-06   p_cons 2.510587e-01   p_joint 1.489362e-06

Joint ci ratio: 1.385928e+00	ci left: 5.975295e-07	ci right 3.062137e-06	k: 7	n:4710000
Cons ci ratio: 3.119664e-03	ci left: 2.506704e-01	ci right 2.514539e-01	k: 1182502	n:4710000
KS ci ratio: 1.385928e+00	ci left: 5.975295e-07	ci right 3.062137e-06	k: 7	n:4710000
CARM1   4710000 perm   9263 sec   (508 perm/sec)   p_kst 1.486200e-06   p_cons 2.510620e-01   p_joint 1.486200e-06

Joint ci ratio: 1.385928e+00	ci left: 5.962636e-07	ci right 3.055649e-06	k: 7	n:4720000
Cons ci ratio: 3.116429e-03	ci left: 2.506622e-01	ci right 2.514448e-01	k: 1184972	n:4720000
KS ci ratio: 1.385928e+00	ci left: 5.962636e-07	ci right 3.055649e-06	k: 7	n:4720000
CARM1   4720000 perm   9301 sec   (507 perm/sec)   p_kst 1.483051e-06   p_cons 2.510534e-01   p_joint 1.483051e-06

Joint ci ratio: 1.385928e+00	ci left: 5.950030e-07	ci right 3.049189e-06	k: 7	n:4730000
Cons ci ratio: 3.113121e-03	ci left: 2.506640e-01	ci right 2.514458e-01	k: 1187489	n:4730000
KS ci ratio: 1.385928e+00	ci left: 5.950030e-07	ci right 3.049189e-06	k: 7	n:4730000
CARM1   4730000 perm   9339 sec   (506 perm/sec)   p_kst 1.479915e-06   p_cons 2.510548e-01   p_joint 1.479915e-06

Joint ci ratio: 1.385928e+00	ci left: 5.937477e-07	ci right 3.042756e-06	k: 7	n:4740000
Cons ci ratio: 3.109866e-03	ci left: 2.506607e-01	ci right 2.514417e-01	k: 1189982	n:4740000
KS ci ratio: 1.385928e+00	ci left: 5.937477e-07	ci right 3.042756e-06	k: 7	n:4740000
CARM1   4740000 perm   9377 sec   (506 perm/sec)   p_kst 1.476793e-06   p_cons 2.510511e-01   p_joint 1.476793e-06

Joint ci ratio: 1.385928e+00	ci left: 5.924977e-07	ci right 3.036350e-06	k: 7	n:4750000
Cons ci ratio: 3.106557e-03	ci left: 2.506653e-01	ci right 2.514454e-01	k: 1192512	n:4750000
KS ci ratio: 1.385928e+00	ci left: 5.924977e-07	ci right 3.036350e-06	k: 7	n:4750000
CARM1   4750000 perm   9415 sec   (505 perm/sec)   p_kst 1.473684e-06   p_cons 2.510552e-01   p_joint 1.473684e-06

Joint ci ratio: 1.385928e+00	ci left: 5.912529e-07	ci right 3.029971e-06	k: 7	n:4760000
Cons ci ratio: 3.103281e-03	ci left: 2.506670e-01	ci right 2.514463e-01	k: 1195029	n:4760000
KS ci ratio: 1.385928e+00	ci left: 5.912529e-07	ci right 3.029971e-06	k: 7	n:4760000
CARM1   4760000 perm   9453 sec   (504 perm/sec)   p_kst 1.470588e-06   p_cons 2.510565e-01   p_joint 1.470588e-06

Joint ci ratio: 1.385928e+00	ci left: 5.900134e-07	ci right 3.023619e-06	k: 7	n:4770000
Cons ci ratio: 3.099957e-03	ci left: 2.506759e-01	ci right 2.514544e-01	k: 1197580	n:4770000
KS ci ratio: 1.385928e+00	ci left: 5.900134e-07	ci right 3.023619e-06	k: 7	n:4770000
CARM1   4770000 perm   9494 sec   (502 perm/sec)   p_kst 1.467505e-06   p_cons 2.510650e-01   p_joint 1.467505e-06

Joint ci ratio: 1.385928e+00	ci left: 5.887791e-07	ci right 3.017294e-06	k: 7	n:4780000
Cons ci ratio: 3.096829e-03	ci left: 2.506622e-01	ci right 2.514398e-01	k: 1200023	n:4780000
KS ci ratio: 1.385928e+00	ci left: 5.887791e-07	ci right 3.017294e-06	k: 7	n:4780000
CARM1   4780000 perm   9550 sec   (501 perm/sec)   p_kst 1.464435e-06   p_cons 2.510508e-01   p_joint 1.464435e-06

Joint ci ratio: 1.385928e+00	ci left: 5.875499e-07	ci right 3.010995e-06	k: 7	n:4790000
Cons ci ratio: 3.093640e-03	ci left: 2.506570e-01	ci right 2.514339e-01	k: 1202507	n:4790000
KS ci ratio: 1.385928e+00	ci left: 5.875499e-07	ci right 3.010995e-06	k: 7	n:4790000
CARM1   4790000 perm   9588 sec   (500 perm/sec)   p_kst 1.461378e-06   p_cons 2.510453e-01   p_joint 1.461378e-06

Joint ci ratio: 1.385928e+00	ci left: 5.863258e-07	ci right 3.004722e-06	k: 7	n:4800000
Cons ci ratio: 3.090422e-03	ci left: 2.506567e-01	ci right 2.514327e-01	k: 1205014	n:4800000
KS ci ratio: 1.385928e+00	ci left: 5.863258e-07	ci right 3.004722e-06	k: 7	n:4800000
CARM1   4800000 perm   9626 sec   (499 perm/sec)   p_kst 1.458333e-06   p_cons 2.510446e-01   p_joint 1.458333e-06

Joint ci ratio: 1.385928e+00	ci left: 5.851069e-07	ci right 2.998475e-06	k: 7	n:4810000
Cons ci ratio: 3.087244e-03	ci left: 2.506527e-01	ci right 2.514279e-01	k: 1207503	n:4810000
KS ci ratio: 1.385928e+00	ci left: 5.851069e-07	ci right 2.998475e-06	k: 7	n:4810000
CARM1   4810000 perm   9664 sec   (498 perm/sec)   p_kst 1.455301e-06   p_cons 2.510401e-01   p_joint 1.455301e-06

Joint ci ratio: 1.385928e+00	ci left: 5.838929e-07	ci right 2.992254e-06	k: 7	n:4820000
Cons ci ratio: 3.084042e-03	ci left: 2.506528e-01	ci right 2.514272e-01	k: 1210012	n:4820000
KS ci ratio: 1.385928e+00	ci left: 5.838929e-07	ci right 2.992254e-06	k: 7	n:4820000
CARM1   4820000 perm   9702 sec   (497 perm/sec)   p_kst 1.452282e-06   p_cons 2.510398e-01   p_joint 1.452282e-06

Joint ci ratio: 1.385928e+00	ci left: 5.826841e-07	ci right 2.986059e-06	k: 7	n:4830000
Cons ci ratio: 3.080925e-03	ci left: 2.506438e-01	ci right 2.514174e-01	k: 1212477	n:4830000
KS ci ratio: 1.385928e+00	ci left: 5.826841e-07	ci right 2.986059e-06	k: 7	n:4830000
CARM1   4830000 perm   9741 sec   (496 perm/sec)   p_kst 1.449275e-06   p_cons 2.510304e-01   p_joint 1.449275e-06

Joint ci ratio: 1.385928e+00	ci left: 5.814802e-07	ci right 2.979889e-06	k: 7	n:4840000
Cons ci ratio: 3.077853e-03	ci left: 2.506305e-01	ci right 2.514033e-01	k: 1214921	n:4840000
KS ci ratio: 1.385928e+00	ci left: 5.814802e-07	ci right 2.979889e-06	k: 7	n:4840000
CARM1   4840000 perm   9779 sec   (495 perm/sec)   p_kst 1.446281e-06   p_cons 2.510167e-01   p_joint 1.446281e-06

Joint ci ratio: 1.385928e+00	ci left: 5.802812e-07	ci right 2.973745e-06	k: 7	n:4850000
Cons ci ratio: 3.074582e-03	ci left: 2.506426e-01	ci right 2.514146e-01	k: 1217488	n:4850000
KS ci ratio: 1.385928e+00	ci left: 5.802812e-07	ci right 2.973745e-06	k: 7	n:4850000
CARM1   4850000 perm   9818 sec   (494 perm/sec)   p_kst 1.443299e-06   p_cons 2.510285e-01   p_joint 1.443299e-06

Joint ci ratio: 1.385928e+00	ci left: 5.790872e-07	ci right 2.967626e-06	k: 7	n:4860000
Cons ci ratio: 3.071437e-03	ci left: 2.506407e-01	ci right 2.514119e-01	k: 1219987	n:4860000
KS ci ratio: 1.385928e+00	ci left: 5.790872e-07	ci right 2.967626e-06	k: 7	n:4860000
CARM1   4860000 perm   9857 sec   (493 perm/sec)   p_kst 1.440329e-06   p_cons 2.510261e-01   p_joint 1.440329e-06

Joint ci ratio: 1.385928e+00	ci left: 5.778981e-07	ci right 2.961533e-06	k: 7	n:4870000
Cons ci ratio: 3.068418e-03	ci left: 2.506244e-01	ci right 2.513948e-01	k: 1222416	n:4870000
KS ci ratio: 1.385928e+00	ci left: 5.778981e-07	ci right 2.961533e-06	k: 7	n:4870000
CARM1   4870000 perm   9895 sec   (492 perm/sec)   p_kst 1.437372e-06   p_cons 2.510094e-01   p_joint 1.437372e-06

Joint ci ratio: 1.385928e+00	ci left: 5.767139e-07	ci right 2.955464e-06	k: 7	n:4880000
Cons ci ratio: 3.065267e-03	ci left: 2.506254e-01	ci right 2.513950e-01	k: 1224929	n:4880000
KS ci ratio: 1.385928e+00	ci left: 5.767139e-07	ci right 2.955464e-06	k: 7	n:4880000
CARM1   4880000 perm   9934 sec   (491 perm/sec)   p_kst 1.434426e-06   p_cons 2.510100e-01   p_joint 1.434426e-06

Joint ci ratio: 1.385928e+00	ci left: 5.755346e-07	ci right 2.949420e-06	k: 7	n:4890000
Cons ci ratio: 3.062165e-03	ci left: 2.506217e-01	ci right 2.513905e-01	k: 1227419	n:4890000
KS ci ratio: 1.385928e+00	ci left: 5.755346e-07	ci right 2.949420e-06	k: 7	n:4890000
CARM1   4890000 perm   9973 sec   (490 perm/sec)   p_kst 1.431493e-06   p_cons 2.510059e-01   p_joint 1.431493e-06

Joint ci ratio: 1.385928e+00	ci left: 5.743600e-07	ci right 2.943401e-06	k: 7	n:4900000
Cons ci ratio: 3.059039e-03	ci left: 2.506221e-01	ci right 2.513901e-01	k: 1229929	n:4900000
KS ci ratio: 1.385928e+00	ci left: 5.743600e-07	ci right 2.943401e-06	k: 7	n:4900000
CARM1   4900000 perm   10011 sec   (489 perm/sec)   p_kst 1.428571e-06   p_cons 2.510059e-01   p_joint 1.428571e-06

Joint ci ratio: 1.385928e+00	ci left: 5.731902e-07	ci right 2.937406e-06	k: 7	n:4910000
Cons ci ratio: 3.055833e-03	ci left: 2.506334e-01	ci right 2.514007e-01	k: 1232493	n:4910000
KS ci ratio: 1.385928e+00	ci left: 5.731902e-07	ci right 2.937406e-06	k: 7	n:4910000
CARM1   4910000 perm   10051 sec   (489 perm/sec)   p_kst 1.425662e-06   p_cons 2.510169e-01   p_joint 1.425662e-06

Joint ci ratio: 1.385928e+00	ci left: 5.720252e-07	ci right 2.931436e-06	k: 7	n:4920000
Cons ci ratio: 3.052785e-03	ci left: 2.506265e-01	ci right 2.513929e-01	k: 1234967	n:4920000
KS ci ratio: 1.385928e+00	ci left: 5.720252e-07	ci right 2.931436e-06	k: 7	n:4920000
CARM1   4920000 perm   10090 sec   (488 perm/sec)   p_kst 1.422764e-06   p_cons 2.510096e-01   p_joint 1.422764e-06

Joint ci ratio: 1.385928e+00	ci left: 5.708649e-07	ci right 2.925490e-06	k: 7	n:4930000
Cons ci ratio: 3.049642e-03	ci left: 2.506325e-01	ci right 2.513982e-01	k: 1237505	n:4930000
KS ci ratio: 1.385928e+00	ci left: 5.708649e-07	ci right 2.925490e-06	k: 7	n:4930000
CARM1   4930000 perm   10129 sec   (487 perm/sec)   p_kst 1.419878e-06   p_cons 2.510152e-01   p_joint 1.419878e-06

Joint ci ratio: 1.385928e+00	ci left: 5.697093e-07	ci right 2.919568e-06	k: 7	n:4940000
Cons ci ratio: 3.046582e-03	ci left: 2.506294e-01	ci right 2.513943e-01	k: 1239998	n:4940000
KS ci ratio: 1.385928e+00	ci left: 5.697093e-07	ci right 2.919568e-06	k: 7	n:4940000
CARM1   4940000 perm   10168 sec   (486 perm/sec)   p_kst 1.417004e-06   p_cons 2.510117e-01   p_joint 1.417004e-06

Joint ci ratio: 1.385928e+00	ci left: 5.685584e-07	ci right 2.913670e-06	k: 7	n:4950000
Cons ci ratio: 3.043492e-03	ci left: 2.506312e-01	ci right 2.513953e-01	k: 1242515	n:4950000
KS ci ratio: 1.385928e+00	ci left: 5.685584e-07	ci right 2.913670e-06	k: 7	n:4950000
CARM1   4950000 perm   10207 sec   (485 perm/sec)   p_kst 1.414141e-06   p_cons 2.510131e-01   p_joint 1.414141e-06

Joint ci ratio: 1.385928e+00	ci left: 5.674121e-07	ci right 2.907795e-06	k: 7	n:4960000
Cons ci ratio: 3.040497e-03	ci left: 2.506223e-01	ci right 2.513857e-01	k: 1244979	n:4960000
KS ci ratio: 1.385928e+00	ci left: 5.674121e-07	ci right 2.907795e-06	k: 7	n:4960000
CARM1   4960000 perm   10247 sec   (484 perm/sec)   p_kst 1.411290e-06   p_cons 2.510038e-01   p_joint 1.411290e-06

Joint ci ratio: 1.385928e+00	ci left: 5.662704e-07	ci right 2.901945e-06	k: 7	n:4970000
Cons ci ratio: 3.037460e-03	ci left: 2.506199e-01	ci right 2.513824e-01	k: 1247475	n:4970000
KS ci ratio: 1.385928e+00	ci left: 5.662704e-07	ci right 2.901945e-06	k: 7	n:4970000
CARM1   4970000 perm   10286 sec   (483 perm/sec)   p_kst 1.408451e-06   p_cons 2.510010e-01   p_joint 1.408451e-06

Joint ci ratio: 1.385928e+00	ci left: 5.651333e-07	ci right 2.896117e-06	k: 7	n:4980000
Cons ci ratio: 3.034371e-03	ci left: 2.506249e-01	ci right 2.513867e-01	k: 1250008	n:4980000
KS ci ratio: 1.385928e+00	ci left: 5.651333e-07	ci right 2.896117e-06	k: 7	n:4980000
CARM1   4980000 perm   10328 sec   (482 perm/sec)   p_kst 1.405622e-06   p_cons 2.510056e-01   p_joint 1.405622e-06

Joint ci ratio: 1.385928e+00	ci left: 5.640008e-07	ci right 2.890314e-06	k: 7	n:4990000
Cons ci ratio: 3.031425e-03	ci left: 2.506134e-01	ci right 2.513745e-01	k: 1252459	n:4990000
KS ci ratio: 1.385928e+00	ci left: 5.640008e-07	ci right 2.890314e-06	k: 7	n:4990000
CARM1   4990000 perm   10377 sec   (481 perm/sec)   p_kst 1.402806e-06   p_cons 2.509938e-01   p_joint 1.402806e-06

Joint ci ratio: 1.385928e+00	ci left: 5.628728e-07	ci right 2.884533e-06	k: 7	n:5000000
Cons ci ratio: 3.028462e-03	ci left: 2.506050e-01	ci right 2.513653e-01	k: 1254925	n:5000000
KS ci ratio: 1.385928e+00	ci left: 5.628728e-07	ci right 2.884533e-06	k: 7	n:5000000
CARM1   5000000 perm   10417 sec   (480 perm/sec)   p_kst 1.400000e-06   p_cons 2.509850e-01   p_joint 1.400000e-06

Outputting figure to mutsig2_images.part000000000030/CARM1.3_1891_5000000_1.4e-06_0.25099_1.4e-06.png
                gene_name: CARM1
               theta_stop: 1.4 
                    nperm: 5000000 
                     p_ks: 1.40e-06 
        ci_ks_bounds_left: 5.63e-07 
       ci_ks_bounds_right: 2.88e-06 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1.40e-06 
     ci_joint_bounds_left: 5.63e-07 
    ci_joint_bounds_right: 2.88e-06 

Current progress: 58 percent done.
CASC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
Cons ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
KS ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
CASC3   10000 perm   2 sec   (5619 perm/sec)   p_kst 2.137000e-01   p_cons 5.540000e-02   p_joint 7.580000e-02

Joint ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
Cons ci ratio: 1.092757e-01	ci left: 5.713750e-02	ci right 6.379100e-02	k: 1208	n:20000
KS ci ratio: 5.341538e-02	ci left: 2.064516e-01	ci right 2.178322e-01	k: 4242	n:20000
CASC3   20000 perm   4 sec   (5064 perm/sec)   p_kst 2.121000e-01   p_cons 6.040000e-02   p_joint 6.870000e-02

Joint ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
Cons ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
KS ci ratio: 4.368116e-02	ci left: 2.069895e-01	ci right 2.162664e-01	k: 6348	n:30000
CASC3   30000 perm   6 sec   (4862 perm/sec)   p_kst 2.116000e-01   p_cons 5.506667e-02   p_joint 5.763333e-02

Outputting figure to mutsig2_images.part000000000030/CASC3.3_2164_30000_0.2116_0.055067_0.057633.png
                gene_name: CASC3
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 60 percent done.
CASC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
Cons ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
CASC4   10000 perm   2 sec   (6210 perm/sec)   p_kst 3.131000e-01   p_cons 6.185000e-01   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000030/CASC4.3_1351_10000_0.3131_0.6185_0.488.png
                gene_name: CASC4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 61 percent done.
CASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
Cons ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
KS ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
CASK   10000 perm   2 sec   (5404 perm/sec)   p_kst 2.438000e-01   p_cons 3.541000e-01   p_joint 2.634000e-01

Outputting figure to mutsig2_images.part000000000030/CASK.3_2889_10000_0.2438_0.3541_0.2634.png
                gene_name: CASK
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 63 percent done.
CASKIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
KS ci ratio: 4.737048e-03	ci left: 9.831763e-01	ci right 9.879347e-01	k: 9857	n:10000
CASKIN2   10000 perm   2 sec   (5168 perm/sec)   p_kst 9.857000e-01   p_cons 6.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASKIN2.3_3685_10000_0.9857_0.6911_1.png
                gene_name: CASKIN2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
CASP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
Cons ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
KS ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
CASP14   10000 perm   2 sec   (6178 perm/sec)   p_kst 4.615000e-01   p_cons 9.783000e-01   p_joint 5.958000e-01

Outputting figure to mutsig2_images.part000000000030/CASP14.3_753_10000_0.4615_0.9783_0.5958.png
                gene_name: CASP14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 67 percent done.
CASP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
Cons ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
KS ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
CASP4   10000 perm   1 sec   (6725 perm/sec)   p_kst 6.816000e-01   p_cons 6.026000e-01   p_joint 7.918000e-01

Outputting figure to mutsig2_images.part000000000030/CASP4.3_1166_10000_0.6816_0.6026_0.7918.png
                gene_name: CASP4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 68 percent done.
CASP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
KS ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
CASP9   10000 perm   2 sec   (6324 perm/sec)   p_kst 9.139000e-01   p_cons 6.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP9.3_1287_10000_0.9139_0.6082_1.png
                gene_name: CASP9
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
CASQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
KS ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
CASQ1   10000 perm   2 sec   (6523 perm/sec)   p_kst 5.107000e-01   p_cons 4.840000e-02   p_joint 1

Joint ci ratio: 2.736949e-02	ci left: 4.993455e-01	ci right 5.132526e-01	k: 10126	n:20000
Cons ci ratio: 1.233061e-01	ci left: 4.512682e-02	ci right 5.110543e-02	k: 961	n:20000
KS ci ratio: 2.730114e-02	ci left: 5.005956e-01	ci right 5.145022e-01	k: 10151	n:20000
CASQ1   20000 perm   3 sec   (5720 perm/sec)   p_kst 5.075500e-01   p_cons 4.805000e-02   p_joint 5.063000e-01

Joint ci ratio: 2.596378e-02	ci left: 4.261186e-01	ci right 4.373613e-01	k: 12952	n:30000
Cons ci ratio: 1.126948e-01	ci left: 3.657794e-02	ci right 4.097862e-02	k: 1162	n:30000
KS ci ratio: 2.251063e-02	ci left: 4.969921e-01	ci right 5.083407e-01	k: 15080	n:30000
CASQ1   30000 perm   6 sec   (5354 perm/sec)   p_kst 5.026667e-01   p_cons 3.873333e-02   p_joint 4.317333e-01

Joint ci ratio: 2.229232e-02	ci left: 4.311077e-01	ci right 4.408516e-01	k: 17439	n:40000
Cons ci ratio: 9.788187e-02	ci left: 3.665999e-02	ci right 4.045737e-02	k: 1541	n:40000
KS ci ratio: 1.954154e-02	ci left: 4.965627e-01	ci right 5.063871e-01	k: 20059	n:40000
CASQ1   40000 perm   8 sec   (5176 perm/sec)   p_kst 5.014750e-01   p_cons 3.852500e-02   p_joint 4.359750e-01

Outputting figure to mutsig2_images.part000000000030/CASQ1.3_1235_40000_0.50148_0.038525_0.43598.png
                gene_name: CASQ1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 72 percent done.
CAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
Cons ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
KS ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
CAT   10000 perm   2 sec   (6195 perm/sec)   p_kst 4.630000e-01   p_cons 4.120000e-02   p_joint 2.550000e-01

Joint ci ratio: 3.939780e-02	ci left: 3.245280e-01	ci right 3.376211e-01	k: 6621	n:20000
Cons ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
KS ci ratio: 3.003890e-02	ci left: 4.529241e-01	ci right 4.667876e-01	k: 9197	n:20000
CAT   20000 perm   4 sec   (5350 perm/sec)   p_kst 4.598500e-01   p_cons 6.025000e-02   p_joint 3.310500e-01

Joint ci ratio: 3.302203e-02	ci left: 3.142910e-01	ci right 3.248773e-01	k: 9587	n:30000
Cons ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
KS ci ratio: 2.443948e-02	ci left: 4.559794e-01	ci right 4.672947e-01	k: 13849	n:30000
CAT   30000 perm   6 sec   (5125 perm/sec)   p_kst 4.616333e-01   p_cons 6.036667e-02   p_joint 3.195667e-01

Outputting figure to mutsig2_images.part000000000030/CAT.3_1636_30000_0.46163_0.060367_0.31957.png
                gene_name: CAT
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 74 percent done.
CATSPER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.053554e-02	ci left: 9.276122e-01	ci right 9.375340e-01	k: 9327	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
CATSPER2   10000 perm   2 sec   (6301 perm/sec)   p_kst 6.624000e-01   p_cons 7.472000e-01   p_joint 9.327000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER2.3_1680_10000_0.6624_0.7472_0.9327.png
                gene_name: CATSPER2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 75 percent done.
CATSPER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
KS ci ratio: 8.507071e-03	ci left: 9.508566e-01	ci right 9.590757e-01	k: 9551	n:10000
CATSPER3   10000 perm   2 sec   (6244 perm/sec)   p_kst 9.551000e-01   p_cons 9.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CATSPER3.3_1229_10000_0.9551_0.944_1.png
                gene_name: CATSPER3
               theta_stop: 0.0096 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
CBFA2T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
CBFA2T3   10000 perm   2 sec   (5992 perm/sec)   p_kst 6.748000e-01   p_cons 3.740000e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000030/CBFA2T3.3_2010_10000_0.6748_0.374_0.7102.png
                gene_name: CBFA2T3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 79 percent done.
CASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.290422e-03	ci left: 9.912756e-01	ci right 9.946275e-01	k: 9931	n:10000
Cons ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
KS ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
CASP1   10000 perm   2 sec   (6540 perm/sec)   p_kst 1.149000e-01   p_cons 7.075000e-01   p_joint 9.931000e-01

Joint ci ratio: 2.684610e-02	ci left: 5.089971e-01	ci right 5.228983e-01	k: 10319	n:20000
Cons ci ratio: 1.783291e-02	ci left: 7.008890e-01	ci right 7.135507e-01	k: 14145	n:20000
KS ci ratio: 7.598122e-02	ci left: 1.129697e-01	ci right 1.219419e-01	k: 2348	n:20000
CASP1   20000 perm   3 sec   (5768 perm/sec)   p_kst 1.174000e-01   p_cons 7.072500e-01   p_joint 5.159500e-01

Outputting figure to mutsig2_images.part000000000030/CASP1.2_1251_20000_0.1174_0.70725_0.51595.png
                gene_name: CASP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 81 percent done.
CAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
Cons ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
KS ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
CAV3   10000 perm   2 sec   (6360 perm/sec)   p_kst 1.742000e-01   p_cons 7.337000e-01   p_joint 3.638000e-01

Outputting figure to mutsig2_images.part000000000030/CAV3.2_464_10000_0.1742_0.7337_0.3638.png
                gene_name: CAV3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 82 percent done.
CBFA2T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
Cons ci ratio: 2.415377e-02	ci left: 7.159319e-01	ci right 7.335370e-01	k: 7248	n:10000
KS ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
CBFA2T2   10000 perm   2 sec   (6128 perm/sec)   p_kst 5.055000e-01   p_cons 7.248000e-01   p_joint 6.834000e-01

Outputting figure to mutsig2_images.part000000000030/CBFA2T2.2_1897_10000_0.5055_0.7248_0.6834.png
                gene_name: CBFA2T2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 84 percent done.
CBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
Cons ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
KS ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
CBLL1   10000 perm   2 sec   (6290 perm/sec)   p_kst 3.642000e-01   p_cons 8.813000e-01   p_joint 7.947000e-01

Outputting figure to mutsig2_images.part000000000030/CBLL1.2_1500_10000_0.3642_0.8813_0.7947.png
                gene_name: CBLL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 86 percent done.
CBLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
Cons ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
KS ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
CBLN4   10000 perm   1 sec   (6825 perm/sec)   p_kst 2.770000e-01   p_cons 2.351000e-01   p_joint 9.569000e-01

Outputting figure to mutsig2_images.part000000000030/CBLN4.2_618_10000_0.277_0.2351_0.9569.png
                gene_name: CBLN4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 88 percent done.
CBR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
Cons ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
KS ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
CBR4   10000 perm   1 sec   (7054 perm/sec)   p_kst 5.102000e-01   p_cons 8.868000e-01   p_joint 6.563000e-01

Outputting figure to mutsig2_images.part000000000030/CBR4.2_734_10000_0.5102_0.8868_0.6563.png
                gene_name: CBR4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
CBWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
Cons ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
KS ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
CBWD1   10000 perm   2 sec   (6623 perm/sec)   p_kst 1.760000e-02   p_cons 1.574000e-01   p_joint 1.589000e-01

Joint ci ratio: 7.798896e-02	ci left: 1.077592e-01	ci right 1.165539e-01	k: 2242	n:20000
Cons ci ratio: 6.463191e-02	ci left: 1.503058e-01	ci right 1.603947e-01	k: 3106	n:20000
KS ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
CBWD1   20000 perm   3 sec   (5842 perm/sec)   p_kst 1.660000e-02   p_cons 1.553000e-01   p_joint 1.121000e-01

Joint ci ratio: 3.615449e-02	ci left: 2.764156e-01	ci right 2.866267e-01	k: 8445	n:30000
Cons ci ratio: 5.268170e-02	ci left: 1.516800e-01	ci right 1.599201e-01	k: 4673	n:30000
KS ci ratio: 1.759980e-01	ci left: 1.483366e-02	ci right 1.772779e-02	k: 487	n:30000
CBWD1   30000 perm   5 sec   (5526 perm/sec)   p_kst 1.623333e-02   p_cons 1.557667e-01   p_joint 2.815000e-01

Joint ci ratio: 3.088914e-02	ci left: 2.825949e-01	ci right 2.914860e-01	k: 11481	n:40000
Cons ci ratio: 4.568461e-02	ci left: 1.518870e-01	ci right 1.590131e-01	k: 6217	n:40000
KS ci ratio: 1.502814e-01	ci left: 1.546688e-02	ci right 1.800398e-02	k: 668	n:40000
CBWD1   40000 perm   7 sec   (5334 perm/sec)   p_kst 1.670000e-02   p_cons 1.554250e-01   p_joint 2.870250e-01

Joint ci ratio: 2.757487e-02	ci left: 2.838540e-01	ci right 2.918107e-01	k: 14391	n:50000
Cons ci ratio: 4.093180e-02	ci left: 1.518181e-01	ci right 1.581820e-01	k: 7749	n:50000
KS ci ratio: 1.337065e-01	ci left: 1.576896e-02	ci right 1.804762e-02	k: 844	n:50000
CBWD1   50000 perm   10 sec   (5197 perm/sec)   p_kst 1.688000e-02   p_cons 1.549800e-01   p_joint 2.878200e-01

Joint ci ratio: 2.521679e-02	ci left: 2.834821e-01	ci right 2.907385e-01	k: 17226	n:60000
Cons ci ratio: 3.740119e-02	ci left: 1.518480e-01	ci right 1.576521e-01	k: 9284	n:60000
KS ci ratio: 1.222410e-01	ci left: 1.581905e-02	ci right 1.789473e-02	k: 1010	n:60000
CBWD1   60000 perm   12 sec   (5060 perm/sec)   p_kst 1.683333e-02   p_cons 1.547333e-01   p_joint 2.871000e-01

Joint ci ratio: 2.231739e-02	ci left: 3.024875e-01	ci right 3.093286e-01	k: 21413	n:70000
Cons ci ratio: 3.457112e-02	ci left: 1.524822e-01	ci right 1.578607e-01	k: 10861	n:70000
KS ci ratio: 1.130029e-01	ci left: 1.594417e-02	ci right 1.786760e-02	k: 1182	n:70000
CBWD1   70000 perm   14 sec   (4948 perm/sec)   p_kst 1.688571e-02   p_cons 1.551571e-01   p_joint 3.059000e-01

Joint ci ratio: 2.086320e-02	ci left: 3.029695e-01	ci right 3.093695e-01	k: 24493	n:80000
Cons ci ratio: 3.227024e-02	ci left: 1.532062e-01	ci right 1.582437e-01	k: 12457	n:80000
KS ci ratio: 1.051914e-01	ci left: 1.616422e-02	ci right 1.797105e-02	k: 1364	n:80000
CBWD1   80000 perm   16 sec   (4849 perm/sec)   p_kst 1.705000e-02   p_cons 1.557125e-01   p_joint 3.061625e-01

Joint ci ratio: 1.969976e-02	ci left: 3.025136e-01	ci right 3.085434e-01	k: 27497	n:90000
Cons ci ratio: 3.041601e-02	ci left: 1.534252e-01	ci right 1.581748e-01	k: 14021	n:90000
KS ci ratio: 9.926178e-02	ci left: 1.618716e-02	ci right 1.788862e-02	k: 1532	n:90000
CBWD1   90000 perm   19 sec   (4758 perm/sec)   p_kst 1.702222e-02   p_cons 1.557889e-01   p_joint 3.055222e-01

Outputting figure to mutsig2_images.part000000000030/CBWD1.2_1298_90000_0.017022_0.15579_0.30552.png
                gene_name: CBWD1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
CBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
Cons ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
KS ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
CBX3   10000 perm   1 sec   (6859 perm/sec)   p_kst 8.264000e-01   p_cons 3.220000e-01   p_joint 8.755000e-01

Outputting figure to mutsig2_images.part000000000030/CBX3.2_572_10000_0.8264_0.322_0.8755.png
                gene_name: CBX3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 93 percent done.
CBX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403275e-02	ci left: 7.179511e-01	ci right 7.355166e-01	k: 7268	n:10000
Cons ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
KS ci ratio: 2.900308e-02	ci left: 6.367370e-01	ci right 6.555778e-01	k: 6462	n:10000
CBX5   10000 perm   1 sec   (6867 perm/sec)   p_kst 6.462000e-01   p_cons 8.357000e-01   p_joint 7.268000e-01

Outputting figure to mutsig2_images.part000000000030/CBX5.2_592_10000_0.6462_0.8357_0.7268.png
                gene_name: CBX5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 95 percent done.
CBX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
KS ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
CBX6   10000 perm   2 sec   (6391 perm/sec)   p_kst 6.139000e-01   p_cons 2.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CBX6.2_1259_10000_0.6139_0.2786_1.png
                gene_name: CBX6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CCBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
CCBP2   10000 perm   2 sec   (5741 perm/sec)   p_kst 8.492000e-01   p_cons 4.698000e-01   p_joint 8.551000e-01

Outputting figure to mutsig2_images.part000000000030/CCBP2.2_1159_10000_0.8492_0.4698_0.8551.png
                gene_name: CCBP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 98 percent done.
CCDC105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
CCDC105   10000 perm   2 sec   (6328 perm/sec)   p_kst 5.140000e-01   p_cons 3.710000e-02   p_joint 4.090000e-02

Joint ci ratio: 1.316446e-01	ci left: 3.964911e-02	ci right 4.528489e-02	k: 848	n:20000
Cons ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
KS ci ratio: 2.661327e-02	ci left: 5.133487e-01	ci right 5.272454e-01	k: 10406	n:20000
CCDC105   20000 perm   4 sec   (5476 perm/sec)   p_kst 5.203000e-01   p_cons 3.690000e-02   p_joint 4.240000e-02

Joint ci ratio: 1.087654e-01	ci left: 3.923849e-02	ci right 4.378417e-02	k: 1244	n:30000
Cons ci ratio: 1.125941e-01	ci left: 3.664280e-02	ci right 4.104708e-02	k: 1164	n:30000
KS ci ratio: 2.160137e-02	ci left: 5.175962e-01	ci right 5.289327e-01	k: 15698	n:30000
CCDC105   30000 perm   6 sec   (5200 perm/sec)   p_kst 5.232667e-01   p_cons 3.880000e-02   p_joint 4.146667e-02

Joint ci ratio: 9.010813e-02	ci left: 4.313582e-02	ci right 4.723054e-02	k: 1806	n:40000
Cons ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
KS ci ratio: 1.876450e-02	ci left: 5.168408e-01	ci right 5.266560e-01	k: 20870	n:40000
CCDC105   40000 perm   8 sec   (5039 perm/sec)   p_kst 5.217500e-01   p_cons 3.892500e-02   p_joint 4.515000e-02

Outputting figure to mutsig2_images.part000000000030/CCDC105.2_1528_40000_0.52175_0.038925_0.04515.png
                gene_name: CCDC105
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000030
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 30 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 4421802: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000031> was used as the working directory.
Started at Wed Oct 24 17:34:29 2012
Results reported at Wed Oct 24 17:50:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000031.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000031.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 31  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000031.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1022.46 sec.
    Max Memory :      5237 MB
    Max Swap   :      7782 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
31
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 31
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 31: processing genes 2715 - 2805
Calculating significance of each gene.
Using projection method.
2715	CCDC109A	2.566376e-01
2716	CCDC109B	6.565185e-01
2717	CCDC11	9.529401e-01
2718	CCDC110	8.480049e-01
2719	CCDC111	8.198891e-01
2720	CCDC112	4.701820e-01
2721	CCDC113	2.558002e-01
2722	CCDC114	4.408383e-01
2723	CCDC115	2.960135e-01
2724	CCDC116	9.203107e-01
2725	CCDC117	1
2726	CCDC12	1
2727	CCDC120	4.134385e-01
2728	CCDC121	1
2729	CCDC122	1.583227e-01
2730	CCDC123	1
2731	CCDC124	1
2732	CCDC125	7.799731e-01
2733	CCDC126	1
2734	CCDC127	4.959086e-01
2735	CCDC129	4.239754e-01
2736	CCDC13	6.657058e-01
2737	CCDC130	8.277418e-01
2738	CCDC132	9.957496e-01
2739	CCDC134	6.593364e-01
2740	CCDC135	9.945257e-01
2741	CCDC136	1.003755e-01
2742	CCDC137	1
2743	CCDC138	8.589003e-01
2744	CCDC14	4.677710e-01
2745	CCDC140	1
2746	CCDC141	3.359037e-02
2747	CCDC142	5.350937e-01
2748	CCDC144A	1
2749	CCDC144B	8.360596e-01
2750	CCDC144NL	4.160341e-01
2751	CCDC146	8.616589e-01
2752	CCDC147	1.968910e-01
2753	CCDC148	2.772990e-01
2754	CCDC149	6.582408e-01
2755	CCDC15	3.068909e-01
2756	CCDC150	4.970668e-01
2757	CCDC151	7.310540e-01
2758	CCDC153	2.988097e-01
2759	CCDC155	4.518142e-01
2760	CCDC157	9.922810e-01
2761	CCDC158	9.909611e-01
2762	CCDC159	1
2763	CCDC17	1
2764	CCDC18	9.996240e-01
2765	CCDC19	8.080786e-01
2766	CCDC21	5.508024e-01
2767	CCDC22	1
2768	CCDC23	1
2769	CCDC24	5.458025e-01
2770	CCDC25	8.342929e-02
2771	CCDC27	1
2772	CCDC28A	2.137780e-02
2773	CCDC28B	4.721216e-01
2774	CCDC3	1.482003e-01
2775	CCDC30	1.340029e-01
2776	CCDC33	9.782126e-01
2777	CCDC34	1
2778	CCDC36	8.578264e-01
2779	CCDC37	1
2780	CCDC38	4.656782e-01
2781	CCDC39	6.336793e-01
2782	CCDC40	1
2783	CCDC41	3.589757e-01
2784	CCDC42	1
2785	CCDC43	4.706710e-01
2786	CCDC45	9.348706e-01
2787	CCDC46	1.404416e-01
2788	CCDC47	3.657236e-01
2789	CCDC48	1
2790	CCDC50	4.354412e-01
2791	CCDC51	9.533463e-01
2792	CCDC52	4.819081e-01
2793	CCDC53	3.836088e-01
In gene CCDC54 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 991     n = 1	mu =   7.03e-07
2794	CCDC54	2.881004e-01
2795	CCDC55	3.388807e-01
2796	CCDC56	1
2797	CCDC57	7.755408e-01
2798	CCDC58	1
2799	CCDC59	6.231882e-01
2800	CCDC6	6.169967e-01
2801	CCDC60	9.678853e-01
2802	CCDC61	1
2803	CCDC62	1
2804	CCDC63	7.596598e-02
2805	CCDC64	8.727977e-01
Done

Running MutSig 2:
Scatter job 31: processing genes 2715 - 2805
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.061910e-02	ci left: 9.265789e-01	ci right 9.365679e-01	k: 9317	n:10000
KS ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
CCDC129   10000 perm   2 sec   (4367 perm/sec)   p_kst 5.673000e-01   p_cons 9.317000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC129.14_3187_10000_0.5673_0.9317_1.png
                gene_name: CCDC129
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
CCDC141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
Cons ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
KS ci ratio: 9.563197e-03	ci left: 9.392090e-01	ci right 9.483304e-01	k: 9439	n:10000
CCDC141   10000 perm   2 sec   (4889 perm/sec)   p_kst 9.439000e-01   p_cons 5.595000e-01   p_joint 9.071000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC141.12_2676_10000_0.9439_0.5595_0.9071.png
                gene_name: CCDC141
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 3 percent done.
CCDC39
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
CCDC39   10000 perm   2 sec   (4698 perm/sec)   p_kst 1.160000e-02   p_cons 5.694000e-01   p_joint 3.720000e-02

Joint ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
Cons ci ratio: 2.413752e-02	ci left: 5.618016e-01	ci right 5.755784e-01	k: 11374	n:20000
KS ci ratio: 2.536541e-01	ci left: 1.030287e-02	ci right 1.334154e-02	k: 235	n:20000
CCDC39   20000 perm   5 sec   (4259 perm/sec)   p_kst 1.175000e-02   p_cons 5.687000e-01   p_joint 2.100000e-02

Joint ci ratio: 1.362934e-01	ci left: 2.500178e-02	ci right 2.869062e-02	k: 804	n:30000
Cons ci ratio: 1.980788e-02	ci left: 5.606024e-01	ci right 5.718514e-01	k: 16987	n:30000
KS ci ratio: 2.071094e-01	ci left: 1.057722e-02	ci right 1.305201e-02	k: 353	n:30000
CCDC39   30000 perm   7 sec   (4075 perm/sec)   p_kst 1.176667e-02   p_cons 5.662333e-01   p_joint 2.680000e-02

Joint ci ratio: 9.543020e-02	ci left: 3.854024e-02	ci right 4.242683e-02	k: 1618	n:40000
Cons ci ratio: 1.713889e-02	ci left: 5.618017e-01	ci right 5.715387e-01	k: 22667	n:40000
KS ci ratio: 1.754544e-01	ci left: 1.124287e-02	ci right 1.342878e-02	k: 492	n:40000
CCDC39   40000 perm   10 sec   (3967 perm/sec)   p_kst 1.230000e-02   p_cons 5.666750e-01   p_joint 4.045000e-02

Joint ci ratio: 1.032125e-01	ci left: 2.659093e-02	ci right 2.950421e-02	k: 1401	n:50000
Cons ci ratio: 1.523351e-02	ci left: 5.654063e-01	ci right 5.741056e-01	k: 28488	n:50000
KS ci ratio: 1.609804e-01	ci left: 1.077589e-02	ci right 1.268143e-02	k: 585	n:50000
CCDC39   50000 perm   13 sec   (3870 perm/sec)   p_kst 1.170000e-02   p_cons 5.697600e-01   p_joint 2.802000e-02

Joint ci ratio: 1.023814e-01	ci left: 2.262760e-02	ci right 2.508542e-02	k: 1430	n:60000
Cons ci ratio: 1.390751e-02	ci left: 5.657434e-01	ci right 5.736832e-01	k: 34183	n:60000
KS ci ratio: 1.471877e-01	ci left: 1.082281e-02	ci right 1.255824e-02	k: 700	n:60000
CCDC39   60000 perm   16 sec   (3795 perm/sec)   p_kst 1.166667e-02   p_cons 5.697167e-01   p_joint 2.383333e-02

Joint ci ratio: 8.896655e-02	ci left: 2.578383e-02	ci right 2.819845e-02	k: 1888	n:70000
Cons ci ratio: 1.288158e-02	ci left: 5.658220e-01	ci right 5.731722e-01	k: 39865	n:70000
KS ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
CCDC39   70000 perm   19 sec   (3729 perm/sec)   p_kst 1.160000e-02   p_cons 5.695000e-01   p_joint 2.697143e-02

Joint ci ratio: 8.084361e-02	ci left: 2.739459e-02	ci right 2.971477e-02	k: 2283	n:80000
Cons ci ratio: 1.202969e-02	ci left: 5.668734e-01	ci right 5.737465e-01	k: 45625	n:80000
KS ci ratio: 1.279310e-01	ci left: 1.085741e-02	ci right 1.235333e-02	k: 927	n:80000
CCDC39   80000 perm   22 sec   (3666 perm/sec)   p_kst 1.158750e-02   p_cons 5.703125e-01   p_joint 2.853750e-02

Joint ci ratio: 7.259867e-02	ci left: 3.023745e-02	ci right 3.252622e-02	k: 2823	n:90000
Cons ci ratio: 1.132787e-02	ci left: 5.676697e-01	ci right 5.741479e-01	k: 51382	n:90000
KS ci ratio: 1.212032e-01	ci left: 1.079210e-02	ci right 1.219521e-02	k: 1033	n:90000
CCDC39   90000 perm   25 sec   (3611 perm/sec)   p_kst 1.147778e-02   p_cons 5.709111e-01   p_joint 3.136667e-02

Joint ci ratio: 6.842174e-02	ci left: 3.069156e-02	ci right 3.287571e-02	k: 3177	n:100000
Cons ci ratio: 1.075231e-02	ci left: 5.675751e-01	ci right 5.737208e-01	k: 57065	n:100000
KS ci ratio: 1.150793e-01	ci left: 1.080951e-02	ci right 1.213905e-02	k: 1146	n:100000
CCDC39   100000 perm   28 sec   (3554 perm/sec)   p_kst 1.146000e-02   p_cons 5.706500e-01   p_joint 3.177000e-02

Joint ci ratio: 6.891554e-02	ci left: 2.758715e-02	ci right 2.956508e-02	k: 3142	n:110000
Cons ci ratio: 1.025336e-02	ci left: 5.676503e-01	ci right 5.735096e-01	k: 62764	n:110000
KS ci ratio: 1.089275e-01	ci left: 1.100212e-02	ci right 1.227837e-02	k: 1279	n:110000
CCDC39   110000 perm   32 sec   (3487 perm/sec)   p_kst 1.162727e-02   p_cons 5.705818e-01   p_joint 2.856364e-02

Joint ci ratio: 6.022581e-02	ci left: 3.307206e-02	ci right 3.513387e-02	k: 4091	n:120000
Cons ci ratio: 9.834029e-03	ci left: 5.669179e-01	ci right 5.725288e-01	k: 68367	n:120000
KS ci ratio: 1.044175e-01	ci left: 1.100183e-02	ci right 1.222195e-02	k: 1392	n:120000
CCDC39   120000 perm   35 sec   (3439 perm/sec)   p_kst 1.160000e-02   p_cons 5.697250e-01   p_joint 3.409167e-02

Joint ci ratio: 6.193599e-02	ci left: 2.896569e-02	ci right 3.082459e-02	k: 3885	n:130000
Cons ci ratio: 9.448718e-03	ci left: 5.670032e-01	ci right 5.723937e-01	k: 74061	n:130000
KS ci ratio: 1.004250e-01	ci left: 1.100250e-02	ci right 1.217329e-02	k: 1505	n:130000
CCDC39   130000 perm   38 sec   (3388 perm/sec)   p_kst 1.157692e-02   p_cons 5.697000e-01   p_joint 2.988462e-02

Joint ci ratio: 5.801040e-02	ci left: 3.066868e-02	ci right 3.250794e-02	k: 4421	n:140000
Cons ci ratio: 9.103162e-03	ci left: 5.672015e-01	ci right 5.723956e-01	k: 79772	n:140000
KS ci ratio: 9.658673e-02	ci left: 1.106659e-02	ci right 1.219663e-02	k: 1627	n:140000
CCDC39   140000 perm   42 sec   (3340 perm/sec)   p_kst 1.162143e-02   p_cons 5.698000e-01   p_joint 3.157857e-02

Outputting figure to mutsig2_images.part000000000031/CCDC39.11_2906_140000_0.011621_0.5698_0.031579.png
                gene_name: CCDC39
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 5 percent done.
CCDC147
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
Cons ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
KS ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
CCDC147   10000 perm   2 sec   (4673 perm/sec)   p_kst 9.094000e-01   p_cons 6.544000e-01   p_joint 9.719000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC147.10_2691_10000_0.9094_0.6544_0.9719.png
                gene_name: CCDC147
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 7 percent done.
CCDC136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
CCDC136   10000 perm   2 sec   (4677 perm/sec)   p_kst 3.774000e-01   p_cons 9.140000e-02   p_joint 1.688000e-01

Joint ci ratio: 5.314522e-02	ci left: 2.081349e-01	ci right 2.195484e-01	k: 4276	n:20000
Cons ci ratio: 8.488614e-02	ci left: 9.224545e-02	ci right 1.004723e-01	k: 1926	n:20000
KS ci ratio: 3.489315e-02	ci left: 3.800921e-01	ci right 3.936408e-01	k: 7737	n:20000
CCDC136   20000 perm   5 sec   (4230 perm/sec)   p_kst 3.868500e-01   p_cons 9.630000e-02   p_joint 2.138000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC136.9_3533_20000_0.38685_0.0963_0.2138.png
                gene_name: CCDC136
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 8 percent done.
CCDC158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
KS ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
CCDC158   10000 perm   2 sec   (4464 perm/sec)   p_kst 6.662000e-01   p_cons 7.595000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC158.9_3434_10000_0.6662_0.7595_1.png
                gene_name: CCDC158
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
CCDC132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
Cons ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
CCDC132   10000 perm   2 sec   (4869 perm/sec)   p_kst 3.211000e-01   p_cons 5.298000e-01   p_joint 4.082000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC132.8_3049_10000_0.3211_0.5298_0.4082.png
                gene_name: CCDC132
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 12 percent done.
CCDC46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
Cons ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
KS ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
CCDC46   10000 perm   2 sec   (4694 perm/sec)   p_kst 6.450000e-01   p_cons 1.230000e-02   p_joint 7.710000e-02

Joint ci ratio: 9.047721e-02	ci left: 8.190496e-02	ci right 8.971595e-02	k: 1715	n:20000
Cons ci ratio: 2.429408e-01	ci left: 1.128823e-02	ci right 1.445574e-02	k: 256	n:20000
KS ci ratio: 2.069563e-02	ci left: 6.353607e-01	ci right 6.486979e-01	k: 12841	n:20000
CCDC46   20000 perm   5 sec   (4260 perm/sec)   p_kst 6.420500e-01   p_cons 1.280000e-02   p_joint 8.575000e-02

Joint ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
Cons ci ratio: 2.022506e-01	ci left: 1.111515e-02	ci right 1.364726e-02	k: 370	n:30000
KS ci ratio: 1.686815e-02	ci left: 6.374143e-01	ci right 6.482913e-01	k: 19286	n:30000
CCDC46   30000 perm   7 sec   (4086 perm/sec)   p_kst 6.428667e-01   p_cons 1.233333e-02   p_joint 4.076667e-02

Joint ci ratio: 8.953876e-02	ci left: 4.367401e-02	ci right 4.779226e-02	k: 1828	n:40000
Cons ci ratio: 1.749164e-01	ci left: 1.131462e-02	ci right 1.350702e-02	k: 495	n:40000
KS ci ratio: 1.467735e-02	ci left: 6.359755e-01	ci right 6.454041e-01	k: 25628	n:40000
CCDC46   40000 perm   10 sec   (3974 perm/sec)   p_kst 6.407000e-01   p_cons 1.237500e-02   p_joint 4.570000e-02

Joint ci ratio: 8.274276e-02	ci left: 4.117968e-02	ci right 4.475363e-02	k: 2147	n:50000
Cons ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
KS ci ratio: 1.311876e-02	ci left: 6.367972e-01	ci right 6.452264e-01	k: 32051	n:50000
CCDC46   50000 perm   13 sec   (3885 perm/sec)   p_kst 6.410200e-01   p_cons 1.246000e-02   p_joint 4.294000e-02

Joint ci ratio: 7.723352e-02	ci left: 3.957450e-02	ci right 4.277008e-02	k: 2469	n:60000
Cons ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
KS ci ratio: 1.198149e-02	ci left: 6.369461e-01	ci right 6.446403e-01	k: 38448	n:60000
CCDC46   60000 perm   16 sec   (3813 perm/sec)   p_kst 6.408000e-01   p_cons 1.243333e-02   p_joint 4.115000e-02

Joint ci ratio: 7.081103e-02	ci left: 4.045569e-02	ci right 4.343957e-02	k: 2935	n:70000
Cons ci ratio: 1.313846e-01	ci left: 1.173153e-02	ci right 1.339495e-02	k: 878	n:70000
KS ci ratio: 1.107243e-02	ci left: 6.380776e-01	ci right 6.451963e-01	k: 44915	n:70000
CCDC46   70000 perm   19 sec   (3748 perm/sec)   p_kst 6.416429e-01   p_cons 1.254286e-02   p_joint 4.192857e-02

Joint ci ratio: 5.892925e-02	ci left: 5.086588e-02	ci right 5.396668e-02	k: 4192	n:80000
Cons ci ratio: 1.208195e-01	ci left: 1.220226e-02	ci right 1.378335e-02	k: 1038	n:80000
KS ci ratio: 1.037153e-02	ci left: 6.376771e-01	ci right 6.443377e-01	k: 51281	n:80000
CCDC46   80000 perm   22 sec   (3684 perm/sec)   p_kst 6.410125e-01   p_cons 1.297500e-02   p_joint 5.240000e-02

Joint ci ratio: 5.814922e-02	ci left: 4.666724e-02	ci right 4.947310e-02	k: 4325	n:90000
Cons ci ratio: 1.135596e-01	ci left: 1.232412e-02	ci right 1.381862e-02	k: 1175	n:90000
KS ci ratio: 9.784313e-03	ci left: 6.375887e-01	ci right 6.438689e-01	k: 57666	n:90000
CCDC46   90000 perm   25 sec   (3621 perm/sec)   p_kst 6.407333e-01   p_cons 1.305556e-02   p_joint 4.805556e-02

Joint ci ratio: 5.222731e-02	ci left: 5.193547e-02	ci right 5.473051e-02	k: 5332	n:100000
Cons ci ratio: 1.078857e-01	ci left: 1.232655e-02	ci right 1.374190e-02	k: 1302	n:100000
KS ci ratio: 9.296005e-03	ci left: 6.370660e-01	ci right 6.430258e-01	k: 64005	n:100000
CCDC46   100000 perm   28 sec   (3566 perm/sec)   p_kst 6.400500e-01   p_cons 1.302000e-02   p_joint 5.332000e-02

Joint ci ratio: 5.116711e-02	ci left: 4.935697e-02	ci right 5.195769e-02	k: 5571	n:110000
Cons ci ratio: 1.028032e-01	ci left: 1.237436e-02	ci right 1.372422e-02	k: 1434	n:110000
KS ci ratio: 8.870133e-03	ci left: 6.368547e-01	ci right 6.425379e-01	k: 70367	n:110000
CCDC46   110000 perm   31 sec   (3514 perm/sec)   p_kst 6.397000e-01   p_cons 1.303636e-02   p_joint 5.064545e-02

Joint ci ratio: 4.569492e-02	ci left: 5.646144e-02	ci right 5.910998e-02	k: 6933	n:120000
Cons ci ratio: 9.879350e-02	ci left: 1.230982e-02	ci right 1.359722e-02	k: 1553	n:120000
KS ci ratio: 8.491591e-03	ci left: 6.370263e-01	ci right 6.424670e-01	k: 76770	n:120000
CCDC46   120000 perm   35 sec   (3466 perm/sec)   p_kst 6.397500e-01   p_cons 1.294167e-02   p_joint 5.777500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC46.8_3138_120000_0.63975_0.012942_0.057775.png
                gene_name: CCDC46
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 14 percent done.
CCDC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
Cons ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
KS ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
CCDC18   10000 perm   2 sec   (4604 perm/sec)   p_kst 2.463000e-01   p_cons 1.126000e-01   p_joint 2.953000e-01

Joint ci ratio: 6.936269e-02	ci left: 1.329030e-01	ci right 1.425026e-01	k: 2753	n:20000
Cons ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
KS ci ratio: 4.792015e-02	ci left: 2.446553e-01	ci right 2.567173e-01	k: 5013	n:20000
CCDC18   20000 perm   5 sec   (4178 perm/sec)   p_kst 2.506500e-01   p_cons 1.120000e-01   p_joint 1.376500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC18.7_4366_20000_0.25065_0.112_0.13765.png
                gene_name: CCDC18
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
CCDC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
KS ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
CCDC30   10000 perm   2 sec   (5172 perm/sec)   p_kst 4.611000e-01   p_cons 9.537000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC30.7_2412_10000_0.4611_0.9537_0.5864.png
                gene_name: CCDC30
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 17 percent done.
CCDC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
Cons ci ratio: 6.651539e-03	ci left: 9.686815e-01	ci right 9.752397e-01	k: 9721	n:10000
KS ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
CCDC63   10000 perm   2 sec   (5280 perm/sec)   p_kst 8.193000e-01   p_cons 9.721000e-01   p_joint 8.984000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC63.7_1736_10000_0.8193_0.9721_0.8984.png
                gene_name: CCDC63
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 19 percent done.
CCDC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
CCDC15   10000 perm   2 sec   (4979 perm/sec)   p_kst 1.432000e-01   p_cons 2.730000e-01   p_joint 1.155000e-01

Joint ci ratio: 5.873369e-02	ci left: 1.767729e-01	ci right 1.875197e-01	k: 3642	n:20000
Cons ci ratio: 4.518734e-02	ci left: 2.671816e-01	ci right 2.795843e-01	k: 5467	n:20000
KS ci ratio: 6.612505e-02	ci left: 1.444857e-01	ci right 1.544164e-01	k: 2988	n:20000
CCDC15   20000 perm   4 sec   (4520 perm/sec)   p_kst 1.494000e-01   p_cons 2.733500e-01   p_joint 1.821000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC15.6_2916_20000_0.1494_0.27335_0.1821.png
                gene_name: CCDC15
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 20 percent done.
CCDC150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
Cons ci ratio: 2.713657e-02	ci left: 6.667271e-01	ci right 6.851703e-01	k: 6760	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
CCDC150   10000 perm   2 sec   (5343 perm/sec)   p_kst 8.280000e-02   p_cons 6.760000e-01   p_joint 2.157000e-01

Joint ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
Cons ci ratio: 1.916941e-02	ci left: 6.699160e-01	ci right 6.829327e-01	k: 13529	n:20000
KS ci ratio: 9.295830e-02	ci left: 7.784205e-02	ci right 8.548010e-02	k: 1632	n:20000
CCDC150   20000 perm   4 sec   (4787 perm/sec)   p_kst 8.160000e-02   p_cons 6.764500e-01   p_joint 1.482000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC150.6_3418_20000_0.0816_0.67645_0.1482.png
                gene_name: CCDC150
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 22 percent done.
CCDC60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
KS ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
CCDC60   10000 perm   2 sec   (5768 perm/sec)   p_kst 6.571000e-01   p_cons 5.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC60.6_1709_10000_0.6571_0.5295_1.png
                gene_name: CCDC60
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CCDC135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
Cons ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
KS ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
CCDC135   10000 perm   2 sec   (4963 perm/sec)   p_kst 2.429000e-01   p_cons 9.842000e-01   p_joint 3.761000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC135.5_2693_10000_0.2429_0.9842_0.3761.png
                gene_name: CCDC135
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 25 percent done.
CCDC28A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
Cons ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
KS ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
CCDC28A   10000 perm   2 sec   (5893 perm/sec)   p_kst 2.088000e-01   p_cons 5.821000e-01   p_joint 2.993000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC28A.5_849_10000_0.2088_0.5821_0.2993.png
                gene_name: CCDC28A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
CCDC38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
Cons ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
KS ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
CCDC38   10000 perm   2 sec   (5631 perm/sec)   p_kst 2.833000e-01   p_cons 1.507000e-01   p_joint 2.825000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC38.5_1752_10000_0.2833_0.1507_0.2825.png
                gene_name: CCDC38
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
CCDC50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
Cons ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
KS ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
CCDC50   10000 perm   2 sec   (5458 perm/sec)   p_kst 6.345000e-01   p_cons 5.612000e-01   p_joint 7.609000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC50.5_1497_10000_0.6345_0.5612_0.7609.png
                gene_name: CCDC50
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 31 percent done.
CCDC52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
CCDC52   10000 perm   2 sec   (5352 perm/sec)   p_kst 5.737000e-01   p_cons 1.945000e-01   p_joint 6.902000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC52.5_2636_10000_0.5737_0.1945_0.6902.png
                gene_name: CCDC52
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 32 percent done.
CCDC54
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
CCDC54   10000 perm   2 sec   (5825 perm/sec)   p_kst 8.555000e-01   p_cons 3.399000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC54.4_991_10000_0.8555_0.3399_0.7968.png
                gene_name: CCDC54
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 34 percent done.
CCDC123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
Cons ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
KS ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
CCDC123   10000 perm   2 sec   (5660 perm/sec)   p_kst 5.643000e-01   p_cons 2.607000e-01   p_joint 6.692000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC123.4_2428_10000_0.5643_0.2607_0.6692.png
                gene_name: CCDC123
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 36 percent done.
CCDC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
Cons ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KS ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
CCDC13   10000 perm   2 sec   (5335 perm/sec)   p_kst 4.731000e-01   p_cons 3.453000e-01   p_joint 4.886000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC13.4_2208_10000_0.4731_0.3453_0.4886.png
                gene_name: CCDC13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 37 percent done.
CCDC138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
Cons ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
CCDC138   10000 perm   2 sec   (5368 perm/sec)   p_kst 3.295000e-01   p_cons 1.750000e-01   p_joint 2.015000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC138.4_2058_10000_0.3295_0.175_0.2015.png
                gene_name: CCDC138
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
CCDC142
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
KS ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
CCDC142   10000 perm   2 sec   (5788 perm/sec)   p_kst 9.980000e-02   p_cons 7.461000e-01   p_joint 2.281000e-01

Joint ci ratio: 4.613284e-02	ci left: 2.590915e-01	ci right 2.713768e-01	k: 5304	n:20000
Cons ci ratio: 1.603093e-02	ci left: 7.432827e-01	ci right 7.553447e-01	k: 14987	n:20000
KS ci ratio: 8.181969e-02	ci left: 9.872217e-02	ci right 1.071937e-01	k: 2058	n:20000
CCDC142   20000 perm   4 sec   (5149 perm/sec)   p_kst 1.029000e-01   p_cons 7.493500e-01   p_joint 2.652000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC142.3_2268_20000_0.1029_0.74935_0.2652.png
                gene_name: CCDC142
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 41 percent done.
CCDC148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
Cons ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
KS ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
CCDC148   10000 perm   2 sec   (5642 perm/sec)   p_kst 5.780000e-02   p_cons 9.507000e-01   p_joint 1.775000e-01

Joint ci ratio: 5.758669e-02	ci left: 1.826552e-01	ci right 1.935356e-01	k: 3761	n:20000
Cons ci ratio: 6.348223e-03	ci left: 9.470941e-01	ci right 9.531742e-01	k: 19004	n:20000
KS ci ratio: 1.103976e-01	ci left: 5.601725e-02	ci right 6.261160e-02	k: 1185	n:20000
CCDC148   20000 perm   4 sec   (5034 perm/sec)   p_kst 5.925000e-02   p_cons 9.502000e-01   p_joint 1.880500e-01

Joint ci ratio: 5.806078e-02	ci left: 1.280571e-01	ci right 1.357477e-01	k: 3956	n:30000
Cons ci ratio: 5.511838e-03	ci left: 9.413723e-01	ci right 9.466079e-01	k: 28321	n:30000
KS ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
CCDC148   30000 perm   6 sec   (4829 perm/sec)   p_kst 5.910000e-02   p_cons 9.440333e-01   p_joint 1.318667e-01

Outputting figure to mutsig2_images.part000000000031/CCDC148.4_1884_30000_0.0591_0.94403_0.13187.png
                gene_name: CCDC148
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
CCDC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
Cons ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
CCDC19   10000 perm   2 sec   (5982 perm/sec)   p_kst 3.140000e-02   p_cons 3.260000e-01   p_joint 8.920000e-02

Joint ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
Cons ci ratio: 3.951818e-02	ci left: 3.231849e-01	ci right 3.362646e-01	k: 6594	n:20000
KS ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
CCDC19   20000 perm   4 sec   (5314 perm/sec)   p_kst 3.090000e-02   p_cons 3.297000e-01   p_joint 6.070000e-02

Joint ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
Cons ci ratio: 3.228472e-02	ci left: 3.241480e-01	ci right 3.348183e-01	k: 9884	n:30000
KS ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
CCDC19   30000 perm   6 sec   (5068 perm/sec)   p_kst 3.126667e-02   p_cons 3.294667e-01   p_joint 5.993333e-02

Joint ci ratio: 8.118442e-02	ci left: 5.283474e-02	ci right 5.733012e-02	k: 2202	n:40000
Cons ci ratio: 2.789151e-02	ci left: 3.259400e-01	ci right 3.351846e-01	k: 13222	n:40000
KS ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
CCDC19   40000 perm   8 sec   (4902 perm/sec)   p_kst 3.120000e-02   p_cons 3.305500e-01   p_joint 5.505000e-02

Joint ci ratio: 8.175349e-02	ci left: 4.215999e-02	ci right 4.577320e-02	k: 2197	n:50000
Cons ci ratio: 2.500198e-02	ci left: 3.254598e-01	ci right 3.337200e-01	k: 16479	n:50000
KS ci ratio: 9.890424e-02	ci left: 2.895149e-02	ci right 3.198335e-02	k: 1522	n:50000
CCDC19   50000 perm   10 sec   (4776 perm/sec)   p_kst 3.044000e-02   p_cons 3.295800e-01   p_joint 4.394000e-02

Outputting figure to mutsig2_images.part000000000031/CCDC19.4_1704_50000_0.03044_0.32958_0.04394.png
                gene_name: CCDC19
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 44 percent done.
CCDC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
KS ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
CCDC21   10000 perm   2 sec   (5449 perm/sec)   p_kst 9.763000e-01   p_cons 8.780000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC21.4_2341_10000_0.9763_0.878_1.png
                gene_name: CCDC21
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
CCDC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
Cons ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
KS ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
CCDC41   10000 perm   2 sec   (5822 perm/sec)   p_kst 4.894000e-01   p_cons 7.846000e-01   p_joint 7.227000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC41.4_2166_10000_0.4894_0.7846_0.7227.png
                gene_name: CCDC41
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
CCDC55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
CCDC55   10000 perm   2 sec   (5591 perm/sec)   p_kst 4.332000e-01   p_cons 1.586000e-01   p_joint 2.522000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC55.4_1705_10000_0.4332_0.1586_0.2522.png
                gene_name: CCDC55
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 49 percent done.
CCDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
Cons ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
KS ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
CCDC6   10000 perm   2 sec   (6074 perm/sec)   p_kst 6.859000e-01   p_cons 3.010000e-02   p_joint 2.581000e-01

Joint ci ratio: 5.427699e-02	ci left: 2.012049e-01	ci right 2.124805e-01	k: 4136	n:20000
Cons ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
KS ci ratio: 1.873295e-02	ci left: 6.799685e-01	ci right 6.928772e-01	k: 13729	n:20000
CCDC6   20000 perm   4 sec   (5443 perm/sec)   p_kst 6.864500e-01   p_cons 3.160000e-02   p_joint 2.068000e-01

Joint ci ratio: 3.340547e-02	ci left: 3.093137e-01	ci right 3.198555e-01	k: 9437	n:30000
Cons ci ratio: 1.261126e-01	ci left: 2.922917e-02	ci right 3.319563e-02	k: 935	n:30000
KS ci ratio: 1.536725e-02	ci left: 6.791401e-01	ci right 6.896909e-01	k: 20533	n:30000
CCDC6   30000 perm   6 sec   (5192 perm/sec)   p_kst 6.844333e-01   p_cons 3.116667e-02   p_joint 3.145667e-01

Joint ci ratio: 3.073515e-02	ci left: 2.846354e-01	ci right 2.935453e-01	k: 11563	n:40000
Cons ci ratio: 1.077987e-01	ci left: 3.027243e-02	ci right 3.374595e-02	k: 1279	n:40000
KS ci ratio: 1.329797e-02	ci left: 6.801962e-01	ci right 6.893270e-01	k: 27391	n:40000
CCDC6   40000 perm   8 sec   (5019 perm/sec)   p_kst 6.847750e-01   p_cons 3.197500e-02   p_joint 2.890750e-01

Joint ci ratio: 2.139761e-02	ci left: 3.973189e-01	ci right 4.059325e-01	k: 20081	n:50000
Cons ci ratio: 9.610852e-02	ci left: 3.065034e-02	ci right 3.376428e-02	k: 1609	n:50000
KS ci ratio: 1.191877e-02	ci left: 6.797839e-01	ci right 6.879547e-01	k: 34194	n:50000
CCDC6   50000 perm   10 sec   (4872 perm/sec)   p_kst 6.838800e-01   p_cons 3.218000e-02   p_joint 4.016200e-01

Outputting figure to mutsig2_images.part000000000031/CCDC6.4_1461_50000_0.68388_0.03218_0.40162.png
                gene_name: CCDC6
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
CCDC109A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
Cons ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
KS ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
CCDC109A   10000 perm   2 sec   (6242 perm/sec)   p_kst 2.856000e-01   p_cons 5.590000e-02   p_joint 3.501000e-01

Joint ci ratio: 4.362511e-02	ci left: 2.812834e-01	ci right 2.938784e-01	k: 5751	n:20000
Cons ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
KS ci ratio: 4.427813e-02	ci left: 2.752743e-01	ci right 2.877893e-01	k: 5630	n:20000
CCDC109A   20000 perm   4 sec   (5481 perm/sec)   p_kst 2.815000e-01   p_cons 5.565000e-02   p_joint 2.875500e-01

Joint ci ratio: 4.183924e-02	ci left: 2.216081e-01	ci right 2.311116e-01	k: 6790	n:30000
Cons ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
KS ci ratio: 3.605347e-02	ci left: 2.775426e-01	ci right 2.877662e-01	k: 8479	n:30000
CCDC109A   30000 perm   6 sec   (5214 perm/sec)   p_kst 2.826333e-01   p_cons 5.653333e-02   p_joint 2.263333e-01

Outputting figure to mutsig2_images.part000000000031/CCDC109A.3_1088_30000_0.28263_0.056533_0.22633.png
                gene_name: CCDC109A
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 53 percent done.
CCDC112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
CCDC112   10000 perm   2 sec   (6120 perm/sec)   p_kst 1.865000e-01   p_cons 2.000000e-03   p_joint 1.320000e-02

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
KS ci ratio: 5.806241e-02	ci left: 1.801834e-01	ci right 1.910082e-01	k: 3711	n:20000
CCDC112   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.855500e-01   p_cons 1.800000e-03   p_joint 3.950000e-03

Joint ci ratio: 4.349599e-01	ci left: 2.115050e-03	ci right 3.317815e-03	k: 80	n:30000
Cons ci ratio: 5.484339e-01	ci left: 1.237277e-03	ci right 2.196709e-03	k: 50	n:30000
KS ci ratio: 4.742889e-02	ci left: 1.810494e-01	ci right 1.898783e-01	k: 5563	n:30000
CCDC112   30000 perm   6 sec   (5067 perm/sec)   p_kst 1.854333e-01   p_cons 1.666667e-03   p_joint 2.666667e-03

Joint ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
Cons ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
KS ci ratio: 4.131305e-02	ci left: 1.799157e-01	ci right 1.875303e-01	k: 7348	n:40000
CCDC112   40000 perm   8 sec   (4854 perm/sec)   p_kst 1.837000e-01   p_cons 1.900000e-03   p_joint 1.025000e-02

Joint ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
Cons ci ratio: 4.039329e-01	ci left: 1.501514e-03	ci right 2.278149e-03	k: 93	n:50000
KS ci ratio: 3.693248e-02	ci left: 1.804730e-01	ci right 1.872837e-01	k: 9193	n:50000
CCDC112   50000 perm   11 sec   (4748 perm/sec)   p_kst 1.838600e-01   p_cons 1.860000e-03   p_joint 1.442000e-02

Joint ci ratio: 1.399886e-01	ci left: 1.199628e-02	ci right 1.381796e-02	k: 773	n:60000
Cons ci ratio: 3.545362e-01	ci left: 1.673650e-03	ci right 2.409186e-03	k: 121	n:60000
KS ci ratio: 3.380438e-02	ci left: 1.799794e-01	ci right 1.861847e-01	k: 10984	n:60000
CCDC112   60000 perm   13 sec   (4657 perm/sec)   p_kst 1.830667e-01   p_cons 2.016667e-03   p_joint 1.288333e-02

Joint ci ratio: 1.336351e-01	ci left: 1.133082e-02	ci right 1.296713e-02	k: 849	n:70000
Cons ci ratio: 3.218789e-01	ci left: 1.774527e-03	ci right 2.467782e-03	k: 147	n:70000
KS ci ratio: 3.120418e-02	ci left: 1.810929e-01	ci right 1.868476e-01	k: 12877	n:70000
CCDC112   70000 perm   15 sec   (4561 perm/sec)   p_kst 1.839571e-01   p_cons 2.100000e-03   p_joint 1.212857e-02

Joint ci ratio: 1.505799e-01	ci left: 7.767168e-03	ci right 9.043868e-03	k: 671	n:80000
Cons ci ratio: 3.030200e-01	ci left: 1.771604e-03	ci right 2.415360e-03	k: 166	n:80000
KS ci ratio: 2.920918e-02	ci left: 1.810716e-01	ci right 1.864514e-01	k: 14700	n:80000
CCDC112   80000 perm   18 sec   (4472 perm/sec)   p_kst 1.837500e-01   p_cons 2.075000e-03   p_joint 8.387500e-03

Joint ci ratio: 1.619621e-01	ci left: 5.942734e-03	ci right 7.000565e-03	k: 581	n:90000
Cons ci ratio: 2.879062e-01	ci left: 1.759943e-03	ci right 2.361764e-03	k: 184	n:90000
KS ci ratio: 2.756179e-02	ci left: 1.809758e-01	ci right 1.860446e-01	k: 16515	n:90000
CCDC112   90000 perm   20 sec   (4392 perm/sec)   p_kst 1.835000e-01   p_cons 2.044444e-03   p_joint 6.455556e-03

Joint ci ratio: 1.618751e-01	ci left: 5.357923e-03	ci right 6.311083e-03	k: 582	n:100000
Cons ci ratio: 2.735025e-01	ci left: 1.769880e-03	ci right 2.339621e-03	k: 204	n:100000
KS ci ratio: 2.617897e-02	ci left: 1.807470e-01	ci right 1.855514e-01	k: 18314	n:100000
CCDC112   100000 perm   23 sec   (4321 perm/sec)   p_kst 1.831400e-01   p_cons 2.040000e-03   p_joint 5.820000e-03

Joint ci ratio: 1.587992e-01	ci left: 5.071479e-03	ci right 5.954900e-03	k: 605	n:110000
Cons ci ratio: 2.570879e-01	ci left: 1.838135e-03	ci right 2.388644e-03	k: 231	n:110000
KS ci ratio: 2.493303e-02	ci left: 1.811892e-01	ci right 1.857729e-01	k: 20182	n:110000
CCDC112   110000 perm   26 sec   (4245 perm/sec)   p_kst 1.834727e-01   p_cons 2.100000e-03   p_joint 5.500000e-03

Joint ci ratio: 1.742429e-01	ci left: 3.833982e-03	ci right 4.573627e-03	k: 503	n:120000
Cons ci ratio: 2.466763e-01	ci left: 1.841107e-03	ci right 2.366753e-03	k: 251	n:120000
KS ci ratio: 2.395074e-02	ci left: 1.803015e-01	ci right 1.846805e-01	k: 21898	n:120000
CCDC112   120000 perm   29 sec   (4179 perm/sec)   p_kst 1.824833e-01   p_cons 2.091667e-03   p_joint 4.191667e-03

Joint ci ratio: 1.734098e-01	ci left: 3.575807e-03	ci right 4.261998e-03	k: 508	n:130000
Cons ci ratio: 2.387583e-01	ci left: 1.822299e-03	ci right 2.323405e-03	k: 268	n:130000
KS ci ratio: 2.301049e-02	ci left: 1.803959e-01	ci right 1.846029e-01	k: 23724	n:130000
CCDC112   130000 perm   32 sec   (4114 perm/sec)   p_kst 1.824923e-01   p_cons 2.061538e-03   p_joint 3.907692e-03

Joint ci ratio: 1.276997e-01	ci left: 6.258594e-03	ci right 7.119172e-03	k: 935	n:140000
Cons ci ratio: 2.092700e-01	ci left: 2.238427e-03	ci right 2.768228e-03	k: 349	n:140000
KS ci ratio: 2.223096e-02	ci left: 1.797045e-01	ci right 1.837515e-01	k: 25441	n:140000
CCDC112   140000 perm   35 sec   (4036 perm/sec)   p_kst 1.817214e-01   p_cons 2.492857e-03   p_joint 6.678571e-03

Joint ci ratio: 1.265100e-01	ci left: 5.957479e-03	ci right 6.768446e-03	k: 953	n:150000
Cons ci ratio: 2.052137e-01	ci left: 2.177681e-03	ci right 2.681859e-03	k: 363	n:150000
KS ci ratio: 2.146719e-02	ci left: 1.799108e-01	ci right 1.838215e-01	k: 27279	n:150000
CCDC112   150000 perm   38 sec   (3968 perm/sec)   p_kst 1.818600e-01   p_cons 2.420000e-03   p_joint 6.353333e-03

Joint ci ratio: 1.029431e-01	ci left: 8.518677e-03	ci right 9.449246e-03	k: 1436	n:160000
Cons ci ratio: 1.957542e-01	ci left: 2.255296e-03	ci right 2.750507e-03	k: 399	n:160000
KS ci ratio: 2.082124e-02	ci left: 1.794647e-01	ci right 1.832469e-01	k: 29016	n:160000
CCDC112   160000 perm   41 sec   (3904 perm/sec)   p_kst 1.813500e-01   p_cons 2.493750e-03   p_joint 8.975000e-03

Joint ci ratio: 1.028263e-01	ci left: 8.040400e-03	ci right 8.917663e-03	k: 1440	n:170000
Cons ci ratio: 1.887994e-01	ci left: 2.290613e-03	ci right 2.773661e-03	k: 429	n:170000
KS ci ratio: 2.021061e-02	ci left: 1.793598e-01	ci right 1.830276e-01	k: 30802	n:170000
CCDC112   170000 perm   44 sec   (3843 perm/sec)   p_kst 1.811882e-01   p_cons 2.523529e-03   p_joint 8.470588e-03

Joint ci ratio: 1.006221e-01	ci left: 7.940200e-03	ci right 8.786860e-03	k: 1504	n:180000
Cons ci ratio: 1.831364e-01	ci left: 2.306376e-03	ci right 2.776541e-03	k: 456	n:180000
KS ci ratio: 1.964484e-02	ci left: 1.793565e-01	ci right 1.829204e-01	k: 32604	n:180000
CCDC112   180000 perm   48 sec   (3786 perm/sec)   p_kst 1.811333e-01   p_cons 2.533333e-03   p_joint 8.355556e-03

Joint ci ratio: 1.174208e-01	ci left: 5.489026e-03	ci right 6.178814e-03	k: 1107	n:190000
Cons ci ratio: 1.774039e-01	ci left: 2.335762e-03	ci right 2.795414e-03	k: 486	n:190000
KS ci ratio: 1.912848e-02	ci left: 1.792868e-01	ci right 1.827546e-01	k: 34393	n:190000
CCDC112   190000 perm   51 sec   (3733 perm/sec)   p_kst 1.810158e-01   p_cons 2.557895e-03   p_joint 5.826316e-03

Joint ci ratio: 1.180828e-01	ci left: 5.156290e-03	ci right 5.808170e-03	k: 1095	n:200000
Cons ci ratio: 1.731885e-01	ci left: 2.333709e-03	ci right 2.780903e-03	k: 510	n:200000
KS ci ratio: 1.864389e-02	ci left: 1.793347e-01	ci right 1.827146e-01	k: 36204	n:200000
CCDC112   200000 perm   54 sec   (3679 perm/sec)   p_kst 1.810200e-01   p_cons 2.550000e-03   p_joint 5.475000e-03

Joint ci ratio: 1.268933e-01	ci left: 4.236658e-03	ci right 4.815245e-03	k: 949	n:210000
Cons ci ratio: 1.687862e-01	ci left: 2.345651e-03	ci right 2.782546e-03	k: 537	n:210000
KS ci ratio: 1.818501e-02	ci left: 1.795309e-01	ci right 1.828303e-01	k: 38047	n:210000
CCDC112   210000 perm   58 sec   (3628 perm/sec)   p_kst 1.811762e-01   p_cons 2.557143e-03   p_joint 4.519048e-03

Joint ci ratio: 1.304716e-01	ci left: 3.819672e-03	ci right 4.357160e-03	k: 898	n:220000
Cons ci ratio: 1.645574e-01	ci left: 2.360996e-03	ci right 2.788641e-03	k: 565	n:220000
KS ci ratio: 1.776006e-02	ci left: 1.796830e-01	ci right 1.829072e-01	k: 39884	n:220000
CCDC112   220000 perm   61 sec   (3578 perm/sec)   p_kst 1.812909e-01   p_cons 2.568182e-03   p_joint 4.081818e-03

Joint ci ratio: 1.168466e-01	ci left: 4.584933e-03	ci right 5.158089e-03	k: 1119	n:230000
Cons ci ratio: 1.614510e-01	ci left: 2.350093e-03	ci right 2.766948e-03	k: 587	n:230000
KS ci ratio: 1.737858e-02	ci left: 1.795670e-01	ci right 1.827193e-01	k: 41662	n:230000
CCDC112   230000 perm   65 sec   (3528 perm/sec)   p_kst 1.811391e-01   p_cons 2.552174e-03   p_joint 4.865217e-03

Joint ci ratio: 1.161830e-01	ci left: 4.446463e-03	ci right 4.998936e-03	k: 1132	n:240000
Cons ci ratio: 1.585140e-01	ci left: 2.340169e-03	ci right 2.746993e-03	k: 609	n:240000
KS ci ratio: 1.700776e-02	ci left: 1.796857e-01	ci right 1.827720e-01	k: 43494	n:240000
CCDC112   240000 perm   69 sec   (3480 perm/sec)   p_kst 1.812250e-01   p_cons 2.537500e-03   p_joint 4.716667e-03

Joint ci ratio: 1.143335e-01	ci left: 4.412334e-03	ci right 4.951249e-03	k: 1169	n:250000
Cons ci ratio: 1.551177e-01	ci left: 2.350325e-03	ci right 2.749347e-03	k: 636	n:250000
KS ci ratio: 1.666128e-02	ci left: 1.797676e-01	ci right 1.827918e-01	k: 45319	n:250000
CCDC112   250000 perm   73 sec   (3434 perm/sec)   p_kst 1.812760e-01   p_cons 2.544000e-03   p_joint 4.676000e-03

Joint ci ratio: 1.128990e-01	ci left: 4.354727e-03	ci right 4.879487e-03	k: 1199	n:260000
Cons ci ratio: 1.520457e-01	ci left: 2.356086e-03	ci right 2.747442e-03	k: 662	n:260000
KS ci ratio: 1.633853e-02	ci left: 1.797824e-01	ci right 1.827478e-01	k: 47128	n:260000
CCDC112   260000 perm   77 sec   (3388 perm/sec)   p_kst 1.812615e-01   p_cons 2.546154e-03   p_joint 4.611538e-03

Joint ci ratio: 1.136242e-01	ci left: 4.139433e-03	ci right 4.641668e-03	k: 1184	n:270000
Cons ci ratio: 1.488247e-01	ci left: 2.372189e-03	ci right 2.757131e-03	k: 691	n:270000
KS ci ratio: 1.602764e-02	ci left: 1.799111e-01	ci right 1.828216e-01	k: 48968	n:270000
CCDC112   270000 perm   81 sec   (3342 perm/sec)   p_kst 1.813630e-01   p_cons 2.559259e-03   p_joint 4.385185e-03

Joint ci ratio: 1.111636e-01	ci left: 4.175565e-03	ci right 4.670494e-03	k: 1237	n:280000
Cons ci ratio: 1.453963e-01	ci left: 2.400990e-03	ci right 2.780851e-03	k: 724	n:280000
KS ci ratio: 1.573423e-02	ci left: 1.800240e-01	ci right 1.828826e-01	k: 50806	n:280000
CCDC112   280000 perm   85 sec   (3297 perm/sec)   p_kst 1.814500e-01   p_cons 2.585714e-03   p_joint 4.417857e-03

Joint ci ratio: 1.115346e-01	ci left: 4.004742e-03	ci right 4.481111e-03	k: 1229	n:290000
Cons ci ratio: 1.427620e-01	ci left: 2.407945e-03	ci right 2.781416e-03	k: 751	n:290000
KS ci ratio: 1.546354e-02	ci left: 1.799921e-01	ci right 1.828005e-01	k: 52604	n:290000
CCDC112   290000 perm   89 sec   (3253 perm/sec)   p_kst 1.813931e-01   p_cons 2.589655e-03   p_joint 4.237931e-03

Joint ci ratio: 9.612073e-02	ci left: 5.248230e-03	ci right 5.781390e-03	k: 1653	n:300000
Cons ci ratio: 1.407194e-01	ci left: 2.398412e-03	ci right 2.764636e-03	k: 773	n:300000
KS ci ratio: 1.520567e-02	ci left: 1.799760e-01	ci right 1.827369e-01	k: 54406	n:300000
CCDC112   300000 perm   93 sec   (3211 perm/sec)   p_kst 1.813533e-01   p_cons 2.576667e-03   p_joint 5.510000e-03

Joint ci ratio: 9.768526e-02	ci left: 4.915215e-03	ci right 5.423136e-03	k: 1601	n:310000
Cons ci ratio: 1.383271e-01	ci left: 2.405101e-03	ci right 2.765588e-03	k: 800	n:310000
KS ci ratio: 1.495590e-02	ci left: 1.800481e-01	ci right 1.827643e-01	k: 56235	n:310000
CCDC112   310000 perm   98 sec   (3170 perm/sec)   p_kst 1.814032e-01   p_cons 2.580645e-03   p_joint 5.164516e-03

Joint ci ratio: 1.097792e-01	ci left: 3.750811e-03	ci right 4.189497e-03	k: 1269	n:320000
Cons ci ratio: 1.372209e-01	ci left: 2.369163e-03	ci right 2.721192e-03	k: 813	n:320000
KS ci ratio: 1.471139e-02	ci left: 1.802500e-01	ci right 1.829245e-01	k: 58107	n:320000
CCDC112   320000 perm   102 sec   (3129 perm/sec)   p_kst 1.815844e-01   p_cons 2.540625e-03   p_joint 3.965625e-03

Joint ci ratio: 1.082978e-01	ci left: 3.740317e-03	ci right 4.171496e-03	k: 1304	n:330000
Cons ci ratio: 1.353229e-01	ci left: 2.364691e-03	ci right 2.710804e-03	k: 836	n:330000
KS ci ratio: 1.449016e-02	ci left: 1.802014e-01	ci right 1.828345e-01	k: 59900	n:330000
CCDC112   330000 perm   107 sec   (3090 perm/sec)   p_kst 1.815152e-01   p_cons 2.533333e-03   p_joint 3.951515e-03

Joint ci ratio: 1.048894e-01	ci left: 3.876520e-03	ci right 4.308470e-03	k: 1390	n:340000
Cons ci ratio: 1.331914e-01	ci left: 2.371886e-03	ci right 2.713151e-03	k: 863	n:340000
KS ci ratio: 1.427169e-02	ci left: 1.802995e-01	ci right 1.828941e-01	k: 61742	n:340000
CCDC112   340000 perm   111 sec   (3053 perm/sec)   p_kst 1.815941e-01   p_cons 2.538235e-03   p_joint 4.088235e-03

Joint ci ratio: 1.031962e-01	ci left: 3.893773e-03	ci right 4.320216e-03	k: 1436	n:350000
Cons ci ratio: 1.306440e-01	ci left: 2.398057e-03	ci right 2.735977e-03	k: 897	n:350000
KS ci ratio: 1.406673e-02	ci left: 1.803098e-01	ci right 1.828669e-01	k: 63555	n:350000
CCDC112   350000 perm   116 sec   (3018 perm/sec)   p_kst 1.815857e-01   p_cons 2.562857e-03   p_joint 4.102857e-03

Joint ci ratio: 1.063699e-01	ci left: 3.558360e-03	ci right 3.960804e-03	k: 1352	n:360000
Cons ci ratio: 1.289327e-01	ci left: 2.395947e-03	ci right 2.728808e-03	k: 921	n:360000
KS ci ratio: 1.385987e-02	ci left: 1.805441e-01	ci right 1.830666e-01	k: 65449	n:360000
CCDC112   360000 perm   121 sec   (2985 perm/sec)   p_kst 1.818028e-01   p_cons 2.558333e-03   p_joint 3.755556e-03

Joint ci ratio: 1.056722e-01	ci left: 3.509542e-03	ci right 3.903699e-03	k: 1370	n:370000
Cons ci ratio: 1.259590e-01	ci left: 2.446323e-03	ci right 2.777759e-03	k: 965	n:370000
KS ci ratio: 1.367068e-02	ci left: 1.805746e-01	ci right 1.830628e-01	k: 67272	n:370000
CCDC112   370000 perm   125 sec   (2953 perm/sec)   p_kst 1.818162e-01   p_cons 2.608108e-03   p_joint 3.702703e-03

Joint ci ratio: 1.082429e-01	ci left: 3.253246e-03	ci right 3.628073e-03	k: 1306	n:380000
Cons ci ratio: 1.241720e-01	ci left: 2.453326e-03	ci right 2.780648e-03	k: 993	n:380000
KS ci ratio: 1.349010e-02	ci left: 1.805801e-01	ci right 1.830353e-01	k: 69086	n:380000
CCDC112   380000 perm   130 sec   (2920 perm/sec)   p_kst 1.818053e-01   p_cons 2.613158e-03   p_joint 3.436842e-03

Joint ci ratio: 1.069821e-01	ci left: 3.247177e-03	ci right 3.616672e-03	k: 1337	n:390000
Cons ci ratio: 1.228815e-01	ci left: 2.442601e-03	ci right 2.764860e-03	k: 1014	n:390000
KS ci ratio: 1.331902e-02	ci left: 1.805293e-01	ci right 1.829524e-01	k: 70878	n:390000
CCDC112   390000 perm   135 sec   (2886 perm/sec)   p_kst 1.817385e-01   p_cons 2.600000e-03   p_joint 3.428205e-03

Joint ci ratio: 1.083771e-01	ci left: 3.083273e-03	ci right 3.438983e-03	k: 1303	n:400000
Cons ci ratio: 1.211624e-01	ci left: 2.451824e-03	ci right 2.770449e-03	k: 1043	n:400000
KS ci ratio: 1.314733e-02	ci left: 1.806383e-01	ci right 1.830313e-01	k: 72733	n:400000
CCDC112   400000 perm   140 sec   (2852 perm/sec)   p_kst 1.818325e-01   p_cons 2.607500e-03   p_joint 3.257500e-03

Joint ci ratio: 1.071519e-01	ci left: 3.079269e-03	ci right 3.430248e-03	k: 1333	n:410000
Cons ci ratio: 1.199062e-01	ci left: 2.444064e-03	ci right 2.758154e-03	k: 1065	n:410000
KS ci ratio: 1.299350e-02	ci left: 1.804818e-01	ci right 1.828446e-01	k: 74481	n:410000
CCDC112   410000 perm   145 sec   (2820 perm/sec)   p_kst 1.816610e-01   p_cons 2.597561e-03   p_joint 3.251220e-03

Joint ci ratio: 1.078066e-01	ci left: 2.968873e-03	ci right 3.309468e-03	k: 1317	n:420000
Cons ci ratio: 1.185791e-01	ci left: 2.441310e-03	ci right 2.751330e-03	k: 1089	n:420000
KS ci ratio: 1.283877e-02	ci left: 1.804755e-01	ci right 1.828099e-01	k: 76289	n:420000
CCDC112   420000 perm   151 sec   (2790 perm/sec)   p_kst 1.816405e-01   p_cons 2.592857e-03   p_joint 3.135714e-03

Joint ci ratio: 1.085148e-01	ci left: 2.861355e-03	ci right 3.191909e-03	k: 1300	n:430000
Cons ci ratio: 1.169796e-01	ci left: 2.452248e-03	ci right 2.759167e-03	k: 1119	n:430000
KS ci ratio: 1.268507e-02	ci left: 1.805717e-01	ci right 1.828791e-01	k: 78141	n:430000
CCDC112   430000 perm   156 sec   (2761 perm/sec)   p_kst 1.817233e-01   p_cons 2.602326e-03   p_joint 3.023256e-03

Joint ci ratio: 1.072445e-01	ci left: 2.864878e-03	ci right 3.191720e-03	k: 1331	n:440000
Cons ci ratio: 1.156956e-01	ci left: 2.451680e-03	ci right 2.754929e-03	k: 1144	n:440000
KS ci ratio: 1.253936e-02	ci left: 1.806024e-01	ci right 1.828836e-01	k: 79966	n:440000
CCDC112   440000 perm   161 sec   (2732 perm/sec)   p_kst 1.817409e-01   p_cons 2.600000e-03   p_joint 3.025000e-03

Joint ci ratio: 1.062527e-01	ci left: 2.855286e-03	ci right 3.177833e-03	k: 1356	n:450000
Cons ci ratio: 1.145512e-01	ci left: 2.446837e-03	ci right 2.746291e-03	k: 1167	n:450000
KS ci ratio: 1.239586e-02	ci left: 1.806963e-01	ci right 1.829523e-01	k: 81820	n:450000
CCDC112   450000 perm   166 sec   (2704 perm/sec)   p_kst 1.818222e-01   p_cons 2.593333e-03   p_joint 3.013333e-03

Joint ci ratio: 1.050593e-01	ci left: 2.858825e-03	ci right 3.177921e-03	k: 1387	n:460000
Cons ci ratio: 1.136796e-01	ci left: 2.431657e-03	ci right 2.726838e-03	k: 1185	n:460000
KS ci ratio: 1.225987e-02	ci left: 1.807211e-01	ci right 1.829525e-01	k: 83644	n:460000
CCDC112   460000 perm   172 sec   (2677 perm/sec)   p_kst 1.818348e-01   p_cons 2.576087e-03   p_joint 3.015217e-03

Joint ci ratio: 1.039789e-01	ci left: 2.858088e-03	ci right 3.173620e-03	k: 1416	n:470000
Cons ci ratio: 1.124537e-01	ci left: 2.433675e-03	ci right 2.725703e-03	k: 1211	n:470000
KS ci ratio: 1.213250e-02	ci left: 1.806410e-01	ci right 1.828481e-01	k: 85419	n:470000
CCDC112   470000 perm   177 sec   (2651 perm/sec)   p_kst 1.817426e-01   p_cons 2.576596e-03   p_joint 3.012766e-03

Joint ci ratio: 1.089526e-01	ci left: 2.543008e-03	ci right 2.838046e-03	k: 1290	n:480000
Cons ci ratio: 1.110867e-01	ci left: 2.443727e-03	ci right 2.733163e-03	k: 1241	n:480000
KS ci ratio: 1.199835e-02	ci left: 1.808283e-01	ci right 1.830131e-01	k: 87321	n:480000
CCDC112   480000 perm   183 sec   (2625 perm/sec)   p_kst 1.819187e-01   p_cons 2.585417e-03   p_joint 2.687500e-03

Joint ci ratio: 1.121816e-01	ci left: 2.346236e-03	ci right 2.627045e-03	k: 1217	n:490000
Cons ci ratio: 1.098118e-01	ci left: 2.451404e-03	ci right 2.738201e-03	k: 1270	n:490000
KS ci ratio: 1.187287e-02	ci left: 1.809002e-01	ci right 1.830628e-01	k: 89170	n:490000
CCDC112   490000 perm   188 sec   (2600 perm/sec)   p_kst 1.819796e-01   p_cons 2.591837e-03   p_joint 2.483673e-03

Joint ci ratio: 1.108690e-01	ci left: 2.355694e-03	ci right 2.634121e-03	k: 1246	n:500000
Cons ci ratio: 1.090008e-01	ci left: 2.439335e-03	ci right 2.722478e-03	k: 1289	n:500000
KS ci ratio: 1.175376e-02	ci left: 1.809054e-01	ci right 1.830463e-01	k: 90987	n:500000
CCDC112   500000 perm   194 sec   (2573 perm/sec)   p_kst 1.819740e-01   p_cons 2.578000e-03   p_joint 2.492000e-03

Joint ci ratio: 1.162262e-01	ci left: 2.096113e-03	ci right 2.356652e-03	k: 1134	n:510000
Cons ci ratio: 1.081248e-01	ci left: 2.431563e-03	ci right 2.711391e-03	k: 1310	n:510000
KS ci ratio: 1.163801e-02	ci left: 1.809145e-01	ci right 1.830342e-01	k: 92806	n:510000
CCDC112   510000 perm   200 sec   (2549 perm/sec)   p_kst 1.819725e-01   p_cons 2.568627e-03   p_joint 2.223529e-03

Joint ci ratio: 1.062743e-01	ci left: 2.470894e-03	ci right 2.750078e-03	k: 1356	n:520000
Cons ci ratio: 1.067486e-01	ci left: 2.448431e-03	ci right 2.726388e-03	k: 1344	n:520000
KS ci ratio: 1.152726e-02	ci left: 1.808811e-01	ci right 1.829801e-01	k: 94603	n:520000
CCDC112   520000 perm   206 sec   (2525 perm/sec)   p_kst 1.819288e-01   p_cons 2.584615e-03   p_joint 2.607692e-03

Joint ci ratio: 9.315131e-02	ci left: 3.175020e-03	ci right 3.487052e-03	k: 1764	n:530000
Cons ci ratio: 1.058477e-01	ci left: 2.444476e-03	ci right 2.719497e-03	k: 1367	n:530000
KS ci ratio: 1.142120e-02	ci left: 1.808076e-01	ci right 1.828864e-01	k: 96378	n:530000
CCDC112   530000 perm   212 sec   (2502 perm/sec)   p_kst 1.818453e-01   p_cons 2.579245e-03   p_joint 3.328302e-03

Joint ci ratio: 9.331345e-02	ci left: 3.105366e-03	ci right 3.411113e-03	k: 1758	n:540000
Cons ci ratio: 1.049314e-01	ci left: 2.442481e-03	ci right 2.714752e-03	k: 1391	n:540000
KS ci ratio: 1.131386e-02	ci left: 1.808460e-01	ci right 1.829055e-01	k: 98212	n:540000
CCDC112   540000 perm   218 sec   (2479 perm/sec)   p_kst 1.818741e-01   p_cons 2.575926e-03   p_joint 3.255556e-03

Joint ci ratio: 9.412489e-02	ci left: 2.995630e-03	ci right 3.293279e-03	k: 1728	n:550000
Cons ci ratio: 1.041862e-01	ci left: 2.433484e-03	ci right 2.702707e-03	k: 1411	n:550000
KS ci ratio: 1.121011e-02	ci left: 1.808668e-01	ci right 1.829075e-01	k: 100037	n:550000
CCDC112   550000 perm   224 sec   (2455 perm/sec)   p_kst 1.818855e-01   p_cons 2.565455e-03   p_joint 3.141818e-03

Joint ci ratio: 9.431925e-02	ci left: 2.929926e-03	ci right 3.221681e-03	k: 1721	n:560000
Cons ci ratio: 1.033842e-01	ci left: 2.428295e-03	ci right 2.694750e-03	k: 1433	n:560000
KS ci ratio: 1.111070e-02	ci left: 1.808459e-01	ci right 1.828682e-01	k: 101839	n:560000
CCDC112   560000 perm   230 sec   (2432 perm/sec)   p_kst 1.818554e-01   p_cons 2.558929e-03   p_joint 3.073214e-03

Joint ci ratio: 9.361556e-02	ci left: 2.923065e-03	ci right 3.211846e-03	k: 1747	n:570000
Cons ci ratio: 1.022142e-01	ci left: 2.442100e-03	ci right 2.706856e-03	k: 1466	n:570000
KS ci ratio: 1.101388e-02	ci left: 1.808258e-01	ci right 1.828301e-01	k: 103641	n:570000
CCDC112   570000 perm   237 sec   (2409 perm/sec)   p_kst 1.818263e-01   p_cons 2.571930e-03   p_joint 3.064912e-03

Joint ci ratio: 8.832616e-02	ci left: 3.234953e-03	ci right 3.535558e-03	k: 1962	n:580000
Cons ci ratio: 1.012183e-01	ci left: 2.448723e-03	ci right 2.711457e-03	k: 1495	n:580000
KS ci ratio: 1.092069e-02	ci left: 1.807755e-01	ci right 1.827622e-01	k: 105425	n:580000
CCDC112   580000 perm   243 sec   (2387 perm/sec)   p_kst 1.817672e-01   p_cons 2.577586e-03   p_joint 3.382759e-03

Joint ci ratio: 7.875738e-02	ci left: 4.016632e-03	ci right 4.347588e-03	k: 2466	n:590000
Cons ci ratio: 1.001195e-01	ci left: 2.461744e-03	ci right 2.722839e-03	k: 1528	n:590000
KS ci ratio: 1.082834e-02	ci left: 1.807675e-01	ci right 1.827373e-01	k: 107233	n:590000
CCDC112   590000 perm   249 sec   (2366 perm/sec)   p_kst 1.817508e-01   p_cons 2.589831e-03   p_joint 4.179661e-03

Joint ci ratio: 7.929444e-02	ci left: 3.895765e-03	ci right 4.219052e-03	k: 2433	n:600000
Cons ci ratio: 9.940718e-02	ci left: 2.456467e-03	ci right 2.715040e-03	k: 1550	n:600000
KS ci ratio: 1.073667e-02	ci left: 1.808049e-01	ci right 1.827582e-01	k: 109068	n:600000
CCDC112   600000 perm   256 sec   (2345 perm/sec)   p_kst 1.817800e-01   p_cons 2.583333e-03   p_joint 4.055000e-03

Outputting figure to mutsig2_images.part000000000031/CCDC112.3_1630_600000_0.18178_0.0025833_0.004055.png
                gene_name: CCDC112
               theta_stop: 0.099 
                    nperm: 600000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.0041 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 54 percent done.
CCDC113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
CCDC113   10000 perm   2 sec   (6199 perm/sec)   p_kst 2.733000e-01   p_cons 5.159000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC113.3_1170_10000_0.2733_0.5159_0.5864.png
                gene_name: CCDC113
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 56 percent done.
CCDC114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
KS ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
CCDC114   10000 perm   2 sec   (5712 perm/sec)   p_kst 2.995000e-01   p_cons 3.241000e-01   p_joint 3.138000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC114.3_2065_10000_0.2995_0.3241_0.3138.png
                gene_name: CCDC114
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 58 percent done.
CCDC120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
CCDC120   10000 perm   2 sec   (5790 perm/sec)   p_kst 1.810000e-02   p_cons 8.039000e-01   p_joint 7.910000e-02

Joint ci ratio: 1.119615e-01	ci left: 5.450789e-02	ci right 6.102142e-02	k: 1154	n:20000
Cons ci ratio: 1.366658e-02	ci left: 7.988841e-01	ci right 8.099273e-01	k: 16089	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
CCDC120   20000 perm   4 sec   (5108 perm/sec)   p_kst 1.885000e-02   p_cons 8.044500e-01   p_joint 5.770000e-02

Joint ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
Cons ci ratio: 1.118641e-02	ci left: 7.991258e-01	ci right 8.081487e-01	k: 24110	n:30000
KS ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
CCDC120   30000 perm   6 sec   (4890 perm/sec)   p_kst 1.846667e-02   p_cons 8.036667e-01   p_joint 6.520000e-02

Joint ci ratio: 7.822165e-02	ci left: 5.675958e-02	ci right 6.140469e-02	k: 2362	n:40000
Cons ci ratio: 9.683586e-03	ci left: 7.998738e-01	ci right 8.076821e-01	k: 32152	n:40000
KS ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
CCDC120   40000 perm   8 sec   (4731 perm/sec)   p_kst 1.907500e-02   p_cons 8.038000e-01   p_joint 5.905000e-02

Joint ci ratio: 7.241564e-02	ci left: 5.335175e-02	ci right 5.738006e-02	k: 2767	n:50000
Cons ci ratio: 8.196952e-03	ci left: 8.172083e-01	ci right 8.239544e-01	k: 41030	n:50000
KS ci ratio: 1.262375e-01	ci left: 1.772442e-02	ci right 2.013190e-02	k: 945	n:50000
CCDC120   50000 perm   11 sec   (4617 perm/sec)   p_kst 1.890000e-02   p_cons 8.206000e-01   p_joint 5.534000e-02

Joint ci ratio: 6.640942e-02	ci left: 5.305779e-02	ci right 5.671874e-02	k: 3292	n:60000
Cons ci ratio: 7.474694e-03	ci left: 8.178249e-01	ci right 8.239774e-01	k: 49255	n:60000
KS ci ratio: 1.160859e-01	ci left: 1.756631e-02	ci right 1.974726e-02	k: 1118	n:60000
CCDC120   60000 perm   13 sec   (4515 perm/sec)   p_kst 1.863333e-02   p_cons 8.209167e-01   p_joint 5.486667e-02

Joint ci ratio: 5.432669e-02	ci left: 6.734475e-02	ci right 7.111962e-02	k: 4845	n:70000
Cons ci ratio: 6.919931e-03	ci left: 8.180678e-01	ci right 8.237627e-01	k: 57465	n:70000
KS ci ratio: 1.021238e-01	ci left: 1.956053e-02	ci right 2.167947e-02	k: 1442	n:70000
CCDC120   70000 perm   16 sec   (4425 perm/sec)   p_kst 2.060000e-02   p_cons 8.209286e-01   p_joint 6.921429e-02

Joint ci ratio: 4.892811e-02	ci left: 7.245481e-02	ci right 7.610114e-02	k: 5941	n:80000
Cons ci ratio: 6.484628e-03	ci left: 8.177222e-01	ci right 8.230545e-01	k: 65632	n:80000
KS ci ratio: 9.568056e-02	ci left: 1.956585e-02	ci right 2.154413e-02	k: 1643	n:80000
CCDC120   80000 perm   19 sec   (4285 perm/sec)   p_kst 2.053750e-02   p_cons 8.204000e-01   p_joint 7.426250e-02

Outputting figure to mutsig2_images.part000000000031/CCDC120.3_2044_80000_0.020538_0.8204_0.074262.png
                gene_name: CCDC120
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.076 

Current progress: 59 percent done.
CCDC122
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
CCDC122   10000 perm   2 sec   (6584 perm/sec)   p_kst 9.815000e-01   p_cons 2.467000e-01   p_joint 6.259000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC122.3_842_10000_0.9815_0.2467_0.6259.png
                gene_name: CCDC122
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 61 percent done.
CCDC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
Cons ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
KS ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
CCDC14   10000 perm   2 sec   (5372 perm/sec)   p_kst 4.293000e-01   p_cons 3.027000e-01   p_joint 5.682000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC14.3_2787_10000_0.4293_0.3027_0.5682.png
                gene_name: CCDC14
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
CCDC144A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
CCDC144A   10000 perm   2 sec   (5035 perm/sec)   p_kst 8.500000e-03   p_cons 7.795000e-01   p_joint 3.800000e-02

Joint ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
Cons ci ratio: 1.467384e-02	ci left: 7.753036e-01	ci right 7.868145e-01	k: 15622	n:20000
KS ci ratio: 3.067269e-01	ci left: 6.858491e-03	ci right 9.387653e-03	k: 161	n:20000
CCDC144A   20000 perm   4 sec   (4503 perm/sec)   p_kst 8.050000e-03   p_cons 7.811000e-01   p_joint 3.505000e-02

Joint ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
Cons ci ratio: 1.203598e-02	ci left: 7.747986e-01	ci right 7.842139e-01	k: 23386	n:30000
KS ci ratio: 2.494108e-01	ci left: 7.148163e-03	ci right 9.215453e-03	k: 244	n:30000
CCDC144A   30000 perm   7 sec   (4320 perm/sec)   p_kst 8.133333e-03   p_cons 7.795333e-01   p_joint 3.266667e-02

Joint ci ratio: 9.163214e-02	ci left: 4.174179e-02	ci right 4.577478e-02	k: 1749	n:40000
Cons ci ratio: 1.041309e-02	ci left: 7.757819e-01	ci right 7.839274e-01	k: 31195	n:40000
KS ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
CCDC144A   40000 perm   10 sec   (4200 perm/sec)   p_kst 8.275000e-03   p_cons 7.798750e-01   p_joint 4.372500e-02

Joint ci ratio: 8.706795e-02	ci left: 3.726116e-02	ci right 4.067263e-02	k: 1947	n:50000
Cons ci ratio: 9.318493e-03	ci left: 7.760411e-01	ci right 7.833264e-01	k: 38985	n:50000
KS ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
CCDC144A   50000 perm   12 sec   (4100 perm/sec)   p_kst 8.220000e-03   p_cons 7.797000e-01   p_joint 3.894000e-02

Joint ci ratio: 9.315423e-02	ci left: 2.732968e-02	ci right 3.001617e-02	k: 1719	n:60000
Cons ci ratio: 8.474382e-03	ci left: 7.776689e-01	ci right 7.843039e-01	k: 46860	n:60000
KS ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
CCDC144A   60000 perm   15 sec   (4017 perm/sec)   p_kst 8.150000e-03   p_cons 7.810000e-01   p_joint 2.865000e-02

Joint ci ratio: 8.530057e-02	ci left: 2.803509e-02	ci right 3.054698e-02	k: 2049	n:70000
Cons ci ratio: 7.869008e-03	ci left: 7.768982e-01	ci right 7.830500e-01	k: 54599	n:70000
KS ci ratio: 1.639553e-01	ci left: 7.435595e-03	ci right 8.777089e-03	k: 566	n:70000
CCDC144A   70000 perm   18 sec   (3946 perm/sec)   p_kst 8.085714e-03   p_cons 7.799857e-01   p_joint 2.927143e-02

Joint ci ratio: 7.971886e-02	ci left: 2.816672e-02	ci right 3.051757e-02	k: 2346	n:80000
Cons ci ratio: 7.365836e-03	ci left: 7.768619e-01	ci right 7.826178e-01	k: 62380	n:80000
KS ci ratio: 1.513770e-01	ci left: 7.682948e-03	ci right 8.953096e-03	k: 664	n:80000
CCDC144A   80000 perm   21 sec   (3878 perm/sec)   p_kst 8.300000e-03   p_cons 7.797500e-01   p_joint 2.932500e-02

Joint ci ratio: 6.326615e-02	ci left: 3.961530e-02	ci right 4.221439e-02	k: 3681	n:90000
Cons ci ratio: 6.931208e-03	ci left: 7.776920e-01	ci right 7.831121e-01	k: 70237	n:90000
KS ci ratio: 1.451988e-01	ci left: 7.449760e-03	ci right 8.626725e-03	k: 722	n:90000
CCDC144A   90000 perm   24 sec   (3813 perm/sec)   p_kst 8.022222e-03   p_cons 7.804111e-01   p_joint 4.090000e-02

Joint ci ratio: 6.125644e-02	ci left: 3.813363e-02	ci right 4.055319e-02	k: 3933	n:100000
Cons ci ratio: 6.577652e-03	ci left: 7.777207e-01	ci right 7.828631e-01	k: 78030	n:100000
KS ci ratio: 1.389147e-01	ci left: 7.350950e-03	ci right 8.457879e-03	k: 789	n:100000
CCDC144A   100000 perm   27 sec   (3749 perm/sec)   p_kst 7.890000e-03   p_cons 7.803000e-01   p_joint 3.933000e-02

Joint ci ratio: 5.831043e-02	ci left: 3.831173e-02	ci right 4.062172e-02	k: 4340	n:110000
Cons ci ratio: 6.263063e-03	ci left: 7.783068e-01	ci right 7.832057e-01	k: 85884	n:110000
KS ci ratio: 1.333814e-01	ci left: 7.271010e-03	ci right 8.318828e-03	k: 856	n:110000
CCDC144A   110000 perm   30 sec   (3691 perm/sec)   p_kst 7.781818e-03   p_cons 7.807636e-01   p_joint 3.945455e-02

Joint ci ratio: 5.528119e-02	ci left: 3.910380e-02	ci right 4.133515e-02	k: 4825	n:120000
Cons ci ratio: 5.993015e-03	ci left: 7.786073e-01	ci right 7.832958e-01	k: 93715	n:120000
KS ci ratio: 1.273540e-01	ci left: 7.334223e-03	ci right 8.339780e-03	k: 939	n:120000
CCDC144A   120000 perm   33 sec   (3635 perm/sec)   p_kst 7.825000e-03   p_cons 7.809583e-01   p_joint 4.020833e-02

Joint ci ratio: 5.440571e-02	ci left: 3.735429e-02	ci right 3.945097e-02	k: 4991	n:130000
Cons ci ratio: 5.759273e-03	ci left: 7.786182e-01	ci right 7.831231e-01	k: 101514	n:130000
KS ci ratio: 1.228655e-01	ci left: 7.291654e-03	ci right 8.253575e-03	k: 1009	n:130000
CCDC144A   130000 perm   36 sec   (3583 perm/sec)   p_kst 7.761538e-03   p_cons 7.808769e-01   p_joint 3.839231e-02

Joint ci ratio: 5.251817e-02	ci left: 3.726542e-02	ci right 3.928233e-02	k: 5357	n:140000
Cons ci ratio: 5.562950e-03	ci left: 7.778852e-01	ci right 7.822317e-01	k: 109209	n:140000
KS ci ratio: 1.179431e-01	ci left: 7.366626e-03	ci right 8.296789e-03	k: 1095	n:140000
CCDC144A   140000 perm   40 sec   (3530 perm/sec)   p_kst 7.821429e-03   p_cons 7.800643e-01   p_joint 3.826429e-02

Joint ci ratio: 4.438969e-02	ci left: 4.832194e-02	ci right 5.052219e-02	k: 7412	n:150000
Cons ci ratio: 5.376684e-03	ci left: 7.778080e-01	ci right 7.820079e-01	k: 116987	n:150000
KS ci ratio: 1.162243e-01	ci left: 7.089015e-03	ci right 7.970182e-03	k: 1128	n:150000
CCDC144A   150000 perm   43 sec   (3481 perm/sec)   p_kst 7.520000e-03   p_cons 7.799133e-01   p_joint 4.941333e-02

Joint ci ratio: 4.329265e-02	ci left: 4.768752e-02	ci right 4.980387e-02	k: 7798	n:160000
Cons ci ratio: 5.203974e-03	ci left: 7.780059e-01	ci right 7.820714e-01	k: 124807	n:160000
KS ci ratio: 1.131157e-01	ci left: 7.028395e-03	ci right 7.877099e-03	k: 1191	n:160000
CCDC144A   160000 perm   47 sec   (3434 perm/sec)   p_kst 7.443750e-03   p_cons 7.800438e-01   p_joint 4.873750e-02

Joint ci ratio: 4.546641e-02	ci left: 4.094080e-02	ci right 4.285133e-02	k: 7121	n:170000
Cons ci ratio: 5.044307e-03	ci left: 7.783595e-01	ci right 7.823015e-01	k: 132657	n:170000
KS ci ratio: 1.094557e-01	ci left: 7.078179e-03	ci right 7.903456e-03	k: 1272	n:170000
CCDC144A   170000 perm   50 sec   (3378 perm/sec)   p_kst 7.482353e-03   p_cons 7.803353e-01   p_joint 4.188824e-02

Joint ci ratio: 4.357365e-02	ci left: 4.208944e-02	ci right 4.396975e-02	k: 7744	n:180000
Cons ci ratio: 4.906820e-03	ci left: 7.780902e-01	ci right 7.819230e-01	k: 140402	n:180000
KS ci ratio: 1.060506e-01	ci left: 7.133643e-03	ci right 7.937896e-03	k: 1355	n:180000
CCDC144A   180000 perm   54 sec   (3333 perm/sec)   p_kst 7.527778e-03   p_cons 7.800111e-01   p_joint 4.302222e-02

Joint ci ratio: 4.249377e-02	ci left: 4.195675e-02	ci right 4.378354e-02	k: 8144	n:190000
Cons ci ratio: 4.778006e-03	ci left: 7.779932e-01	ci right 7.817246e-01	k: 148174	n:190000
KS ci ratio: 1.029446e-01	ci left: 7.183623e-03	ci right 7.968356e-03	k: 1438	n:190000
CCDC144A   190000 perm   58 sec   (3290 perm/sec)   p_kst 7.568421e-03   p_cons 7.798632e-01   p_joint 4.286316e-02

Joint ci ratio: 4.119911e-02	ci left: 4.241212e-02	ci right 4.420114e-02	k: 8660	n:200000
Cons ci ratio: 4.656525e-03	ci left: 7.780777e-01	ci right 7.817142e-01	k: 155980	n:200000
KS ci ratio: 1.002626e-01	ci left: 7.204535e-03	ci right 7.969841e-03	k: 1516	n:200000
CCDC144A   200000 perm   62 sec   (3243 perm/sec)   p_kst 7.580000e-03   p_cons 7.799000e-01   p_joint 4.330000e-02

Joint ci ratio: 4.177970e-02	ci left: 3.939213e-02	ci right 4.107773e-02	k: 8448	n:210000
Cons ci ratio: 4.542223e-03	ci left: 7.782793e-01	ci right 7.818272e-01	k: 163812	n:210000
KS ci ratio: 9.777980e-02	ci left: 7.223696e-03	ci right 7.970945e-03	k: 1594	n:210000
CCDC144A   210000 perm   66 sec   (3204 perm/sec)   p_kst 7.590476e-03   p_cons 7.800571e-01   p_joint 4.022857e-02

Outputting figure to mutsig2_images.part000000000031/CCDC144A.3_4356_210000_0.0075905_0.78006_0.040229.png
                gene_name: CCDC144A
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.0076 
        ci_ks_bounds_left: 0.0072 
       ci_ks_bounds_right: 0.0080 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 64 percent done.
CCDC146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
Cons ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
KS ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
CCDC146   10000 perm   2 sec   (5537 perm/sec)   p_kst 4.223000e-01   p_cons 1.008000e-01   p_joint 2.513000e-01

Joint ci ratio: 6.931891e-02	ci left: 1.330508e-01	ci right 1.426547e-01	k: 2756	n:20000
Cons ci ratio: 8.651020e-02	ci left: 8.905828e-02	ci right 9.716047e-02	k: 1861	n:20000
KS ci ratio: 3.255018e-02	ci left: 4.134461e-01	ci right 4.271771e-01	k: 8406	n:20000
CCDC146   20000 perm   4 sec   (4922 perm/sec)   p_kst 4.203000e-01   p_cons 9.305000e-02   p_joint 1.378000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC146.3_2940_20000_0.4203_0.09305_0.1378.png
                gene_name: CCDC146
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 66 percent done.
CCDC151
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
Cons ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
KS ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
CCDC151   10000 perm   2 sec   (5881 perm/sec)   p_kst 3.276000e-01   p_cons 2.493000e-01   p_joint 4.005000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC151.3_1840_10000_0.3276_0.2493_0.4005.png
                gene_name: CCDC151
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 68 percent done.
CCDC155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
Cons ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
KS ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
CCDC155   10000 perm   2 sec   (6024 perm/sec)   p_kst 2.647000e-01   p_cons 1.185000e-01   p_joint 1.618000e-01

Joint ci ratio: 5.375322e-02	ci left: 2.043726e-01	ci right 2.157119e-01	k: 4200	n:20000
Cons ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
KS ci ratio: 4.629315e-02	ci left: 2.577517e-01	ci right 2.700170e-01	k: 5277	n:20000
CCDC155   20000 perm   4 sec   (5312 perm/sec)   p_kst 2.638500e-01   p_cons 1.071500e-01   p_joint 2.100000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC155.3_1765_20000_0.26385_0.10715_0.21.png
                gene_name: CCDC155
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
CCDC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
Cons ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
KS ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
CCDC25   10000 perm   2 sec   (6498 perm/sec)   p_kst 7.340000e-01   p_cons 8.800000e-02   p_joint 2.521000e-01

Joint ci ratio: 3.768300e-02	ci left: 3.444321e-01	ci right 3.577112e-01	k: 7021	n:20000
Cons ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
KS ci ratio: 1.672038e-02	ci left: 7.270117e-01	ci right 7.393204e-01	k: 14664	n:20000
CCDC25   20000 perm   4 sec   (5673 perm/sec)   p_kst 7.332000e-01   p_cons 8.875000e-02   p_joint 3.510500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC25.3_663_20000_0.7332_0.08875_0.35105.png
                gene_name: CCDC25
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 71 percent done.
CCDC33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
KS ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
CCDC33   10000 perm   2 sec   (5628 perm/sec)   p_kst 7.449000e-01   p_cons 5.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC33.3_2607_10000_0.7449_0.5605_1.png
                gene_name: CCDC33
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CCDC47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.190619e-02	ci left: 9.099797e-01	ci right 9.209768e-01	k: 9156	n:10000
Cons ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KS ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
CCDC47   10000 perm   2 sec   (6045 perm/sec)   p_kst 7.001000e-01   p_cons 4.611000e-01   p_joint 9.156000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC47.3_1500_10000_0.7001_0.4611_0.9156.png
                gene_name: CCDC47
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 75 percent done.
CCDC57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
Cons ci ratio: 1.819913e-02	ci left: 8.150708e-01	ci right 8.301408e-01	k: 8227	n:10000
KS ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
CCDC57   10000 perm   2 sec   (5409 perm/sec)   p_kst 2.428000e-01   p_cons 8.227000e-01   p_joint 4.867000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC57.3_2812_10000_0.2428_0.8227_0.4867.png
                gene_name: CCDC57
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 76 percent done.
CCDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
KS ci ratio: 3.113690e-02	ci left: 6.034724e-01	ci right 6.226617e-01	k: 6131	n:10000
CCDC11   10000 perm   2 sec   (6367 perm/sec)   p_kst 6.131000e-01   p_cons 8.650000e-02   p_joint 2.523000e-01

Joint ci ratio: 4.790740e-02	ci left: 2.447544e-01	ci right 2.568181e-01	k: 5015	n:20000
Cons ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
KS ci ratio: 2.202984e-02	ci left: 6.060583e-01	ci right 6.196089e-01	k: 12257	n:20000
CCDC11   20000 perm   4 sec   (5600 perm/sec)   p_kst 6.128500e-01   p_cons 8.620000e-02   p_joint 2.507500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC11.2_1577_20000_0.61285_0.0862_0.25075.png
                gene_name: CCDC11
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 78 percent done.
CCDC110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
Cons ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
KS ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
CCDC110   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.766000e-01   p_cons 6.983000e-01   p_joint 7.589000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC110.2_2530_10000_0.1766_0.6983_0.7589.png
                gene_name: CCDC110
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 80 percent done.
CCDC111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
Cons ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
KS ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
CCDC111   10000 perm   2 sec   (6132 perm/sec)   p_kst 3.130000e-01   p_cons 4.014000e-01   p_joint 4.657000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC111.2_1731_10000_0.313_0.4014_0.4657.png
                gene_name: CCDC111
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 81 percent done.
CCDC115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
CCDC115   10000 perm   1 sec   (7039 perm/sec)   p_kst 8.248000e-01   p_cons 2.420000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC115.2_563_10000_0.8248_0.242_1.png
                gene_name: CCDC115
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CCDC127
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
Cons ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
KS ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
CCDC127   10000 perm   1 sec   (7039 perm/sec)   p_kst 3.561000e-01   p_cons 1.269000e-01   p_joint 6.107000e-01

Joint ci ratio: 2.204841e-02	ci left: 6.056571e-01	ci right 6.192102e-01	k: 12249	n:20000
Cons ci ratio: 7.352014e-02	ci left: 1.198558e-01	ci right 1.290537e-01	k: 2488	n:20000
KS ci ratio: 3.716767e-02	ci left: 3.507046e-01	ci right 3.640369e-01	k: 7147	n:20000
CCDC127   20000 perm   3 sec   (6185 perm/sec)   p_kst 3.573500e-01   p_cons 1.244000e-01   p_joint 6.124500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC127.2_791_20000_0.35735_0.1244_0.61245.png
                gene_name: CCDC127
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 85 percent done.
CCDC149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
CCDC149   10000 perm   2 sec   (6210 perm/sec)   p_kst 5.289000e-01   p_cons 1.820000e-01   p_joint 9.883000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC149.2_1642_10000_0.5289_0.182_0.9883.png
                gene_name: CCDC149
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
CCDC153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
Cons ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
KS ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
CCDC153   10000 perm   1 sec   (6761 perm/sec)   p_kst 3.508000e-01   p_cons 9.520000e-01   p_joint 6.522000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC153.2_657_10000_0.3508_0.952_0.6522.png
                gene_name: CCDC153
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 88 percent done.
CCDC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
CCDC24   10000 perm   2 sec   (6399 perm/sec)   p_kst 6.901000e-01   p_cons 7.581000e-01   p_joint 9.298000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC24.2_956_10000_0.6901_0.7581_0.9298.png
                gene_name: CCDC24
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 90 percent done.
CCDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
Cons ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
KS ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
CCDC3   10000 perm   1 sec   (6744 perm/sec)   p_kst 2.687000e-01   p_cons 8.054000e-01   p_joint 5.440000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC3.2_825_10000_0.2687_0.8054_0.544.png
                gene_name: CCDC3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 92 percent done.
CCDC36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
Cons ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
KS ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
CCDC36   10000 perm   2 sec   (6147 perm/sec)   p_kst 8.070000e-02   p_cons 2.042000e-01   p_joint 1.990000e-02

Joint ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
Cons ci ratio: 5.510947e-02	ci left: 1.963059e-01	ci right 2.074809e-01	k: 4037	n:20000
KS ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
CCDC36   20000 perm   4 sec   (5465 perm/sec)   p_kst 8.060000e-02   p_cons 2.018500e-01   p_joint 2.525000e-02

Joint ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
Cons ci ratio: 4.504813e-02	ci left: 1.969734e-01	ci right 2.060845e-01	k: 6045	n:30000
KS ci ratio: 7.601052e-02	ci left: 7.832967e-02	ci right 8.455167e-02	k: 2442	n:30000
CCDC36   30000 perm   6 sec   (5189 perm/sec)   p_kst 8.140000e-02   p_cons 2.015000e-01   p_joint 2.686667e-02

Joint ci ratio: 1.210418e-01	ci left: 2.400146e-02	ci right 2.711794e-02	k: 1021	n:40000
Cons ci ratio: 3.893228e-02	ci left: 1.982484e-01	ci right 2.061449e-01	k: 8087	n:40000
KS ci ratio: 6.605196e-02	ci left: 7.824576e-02	ci right 8.361526e-02	k: 3236	n:40000
CCDC36   40000 perm   8 sec   (5008 perm/sec)   p_kst 8.090000e-02   p_cons 2.021750e-01   p_joint 2.552500e-02

Joint ci ratio: 1.195794e-01	ci left: 1.978049e-02	ci right 2.231555e-02	k: 1051	n:50000
Cons ci ratio: 3.491088e-02	ci left: 1.978524e-01	ci right 2.049023e-01	k: 10068	n:50000
KS ci ratio: 5.887520e-02	ci left: 7.903724e-02	ci right 8.385148e-02	k: 4071	n:50000
CCDC36   50000 perm   10 sec   (4872 perm/sec)   p_kst 8.142000e-02   p_cons 2.013600e-01   p_joint 2.102000e-02

Joint ci ratio: 1.091343e-01	ci left: 1.990003e-02	ci right 2.221329e-02	k: 1262	n:60000
Cons ci ratio: 3.181937e-02	ci left: 1.986611e-01	ci right 2.051011e-01	k: 12112	n:60000
KS ci ratio: 5.364043e-02	ci left: 7.953672e-02	ci right 8.393717e-02	k: 4903	n:60000
CCDC36   60000 perm   13 sec   (4763 perm/sec)   p_kst 8.171667e-02   p_cons 2.018667e-01   p_joint 2.103333e-02

Joint ci ratio: 9.797518e-02	ci left: 2.126068e-02	ci right 2.346487e-02	k: 1564	n:70000
Cons ci ratio: 2.945098e-02	ci left: 1.989884e-01	ci right 2.049506e-01	k: 14137	n:70000
KS ci ratio: 4.933042e-02	ci left: 8.069807e-02	ci right 8.479374e-02	k: 5791	n:70000
CCDC36   70000 perm   15 sec   (4658 perm/sec)   p_kst 8.272857e-02   p_cons 2.019571e-01   p_joint 2.234286e-02

Outputting figure to mutsig2_images.part000000000031/CCDC36.2_1813_70000_0.082729_0.20196_0.022343.png
                gene_name: CCDC36
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 93 percent done.
CCDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
Cons ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
KS ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
CCDC40   10000 perm   2 sec   (5477 perm/sec)   p_kst 1.652000e-01   p_cons 8.376000e-01   p_joint 7.859000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC40.2_3509_10000_0.1652_0.8376_0.7859.png
                gene_name: CCDC40
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 95 percent done.
CCDC61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
Cons ci ratio: 4.929473e-02	ci left: 3.777363e-01	ci right 3.969293e-01	k: 3873	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
CCDC61   10000 perm   2 sec   (6273 perm/sec)   p_kst 6.882000e-01   p_cons 3.873000e-01   p_joint 6.199000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC61.2_1656_10000_0.6882_0.3873_0.6199.png
                gene_name: CCDC61
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 97 percent done.
CCDC62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
CCDC62   10000 perm   2 sec   (6128 perm/sec)   p_kst 1.568000e-01   p_cons 4.965000e-01   p_joint 7.653000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC62.2_2155_10000_0.1568_0.4965_0.7653.png
                gene_name: CCDC62
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 98 percent done.
CCDC64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
KS ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
CCDC64   10000 perm   2 sec   (6114 perm/sec)   p_kst 1.180000e-02   p_cons 7.526000e-01   p_joint 3.740000e-02

Joint ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
Cons ci ratio: 1.592426e-02	ci left: 7.458024e-01	ci right 7.578243e-01	k: 15037	n:20000
KS ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
CCDC64   20000 perm   4 sec   (5394 perm/sec)   p_kst 1.130000e-02   p_cons 7.518500e-01   p_joint 3.340000e-02

Joint ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
Cons ci ratio: 1.348246e-02	ci left: 7.330517e-01	ci right 7.430355e-01	k: 22142	n:30000
KS ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
CCDC64   30000 perm   6 sec   (5149 perm/sec)   p_kst 1.156667e-02   p_cons 7.380667e-01   p_joint 4.000000e-02

Joint ci ratio: 2.041281e-02	ci left: 4.747683e-01	ci right 4.845847e-01	k: 19187	n:40000
Cons ci ratio: 1.166536e-02	ci left: 7.340883e-01	ci right 7.427270e-01	k: 29537	n:40000
KS ci ratio: 1.843685e-01	ci left: 1.014409e-02	ci right 1.222778e-02	k: 446	n:40000
CCDC64   40000 perm   8 sec   (4985 perm/sec)   p_kst 1.115000e-02   p_cons 7.384250e-01   p_joint 4.796750e-01

Joint ci ratio: 8.633275e-02	ci left: 3.788782e-02	ci right 4.132590e-02	k: 1979	n:50000
Cons ci ratio: 1.047664e-02	ci left: 7.329566e-01	ci right 7.406959e-01	k: 36842	n:50000
KS ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
CCDC64   50000 perm   10 sec   (4861 perm/sec)   p_kst 1.100000e-02   p_cons 7.368400e-01   p_joint 3.958000e-02

Joint ci ratio: 7.845049e-02	ci left: 3.838057e-02	ci right 4.153080e-02	k: 2396	n:60000
Cons ci ratio: 9.565226e-03	ci left: 7.332399e-01	ci right 7.403038e-01	k: 44207	n:60000
KS ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
CCDC64   60000 perm   13 sec   (4750 perm/sec)   p_kst 1.150000e-02   p_cons 7.367833e-01   p_joint 3.993333e-02

Joint ci ratio: 7.274635e-02	ci left: 3.837782e-02	ci right 4.128905e-02	k: 2787	n:70000
Cons ci ratio: 8.846824e-03	ci left: 7.338937e-01	ci right 7.404295e-01	k: 51602	n:70000
KS ci ratio: 1.386771e-01	ci left: 1.050256e-02	ci right 1.208120e-02	k: 789	n:70000
CCDC64   70000 perm   15 sec   (4656 perm/sec)   p_kst 1.127143e-02   p_cons 7.371714e-01   p_joint 3.981429e-02

Joint ci ratio: 6.812920e-02	ci left: 3.838204e-02	ci right 4.110146e-02	k: 3178	n:80000
Cons ci ratio: 8.252952e-03	ci left: 7.351639e-01	ci right 7.412688e-01	k: 59058	n:80000
KS ci ratio: 1.305167e-01	ci left: 1.042180e-02	ci right 1.188897e-02	k: 891	n:80000
CCDC64   80000 perm   18 sec   (4552 perm/sec)   p_kst 1.113750e-02   p_cons 7.382250e-01   p_joint 3.972500e-02

Joint ci ratio: 8.938552e-02	ci left: 1.998620e-02	ci right 2.186707e-02	k: 1882	n:90000
Cons ci ratio: 7.785714e-03	ci left: 7.351029e-01	ci right 7.408596e-01	k: 66419	n:90000
KS ci ratio: 1.222845e-01	ci left: 1.059813e-02	ci right 1.198920e-02	k: 1015	n:90000
CCDC64   90000 perm   20 sec   (4465 perm/sec)   p_kst 1.127778e-02   p_cons 7.379889e-01   p_joint 2.091111e-02

Joint ci ratio: 7.210110e-02	ci left: 2.767386e-02	ci right 2.975359e-02	k: 2870	n:100000
Cons ci ratio: 7.370689e-03	ci left: 7.360654e-01	ci right 7.415207e-01	k: 73880	n:100000
KS ci ratio: 1.159517e-01	ci left: 1.064437e-02	ci right 1.196420e-02	k: 1129	n:100000
CCDC64   100000 perm   23 sec   (4380 perm/sec)   p_kst 1.129000e-02   p_cons 7.388000e-01   p_joint 2.870000e-02

Joint ci ratio: 6.880295e-02	ci left: 2.767654e-02	ci right 2.965751e-02	k: 3152	n:110000
Cons ci ratio: 7.035458e-03	ci left: 7.357646e-01	ci right 7.409683e-01	k: 81221	n:110000
KS ci ratio: 1.109626e-01	ci left: 1.059532e-02	ci right 1.184884e-02	k: 1233	n:110000
CCDC64   110000 perm   26 sec   (4302 perm/sec)   p_kst 1.120909e-02   p_cons 7.383727e-01   p_joint 2.865455e-02

Joint ci ratio: 8.054061e-02	ci left: 1.857807e-02	ci right 2.014528e-02	k: 2322	n:120000
Cons ci ratio: 6.743600e-03	ci left: 7.354353e-01	ci right 7.404199e-01	k: 88552	n:120000
KS ci ratio: 1.060469e-01	ci left: 1.066094e-02	ci right 1.186286e-02	k: 1350	n:120000
CCDC64   120000 perm   28 sec   (4229 perm/sec)   p_kst 1.125000e-02   p_cons 7.379333e-01   p_joint 1.935000e-02

Joint ci ratio: 7.745289e-02	ci left: 1.857412e-02	ci right 2.007820e-02	k: 2511	n:130000
Cons ci ratio: 6.458084e-03	ci left: 7.367886e-01	ci right 7.415699e-01	k: 96094	n:130000
KS ci ratio: 1.022612e-01	ci left: 1.060503e-02	ci right 1.175539e-02	k: 1452	n:130000
CCDC64   130000 perm   31 sec   (4161 perm/sec)   p_kst 1.116923e-02   p_cons 7.391846e-01   p_joint 1.931538e-02

Joint ci ratio: 7.451244e-02	ci left: 1.866287e-02	ci right 2.011428e-02	k: 2713	n:140000
Cons ci ratio: 6.225108e-03	ci left: 7.367554e-01	ci right 7.413632e-01	k: 103469	n:140000
KS ci ratio: 9.828032e-02	ci left: 1.068320e-02	ci right 1.179433e-02	k: 1572	n:140000
CCDC64   140000 perm   34 sec   (4086 perm/sec)   p_kst 1.122857e-02   p_cons 7.390643e-01   p_joint 1.937857e-02

Outputting figure to mutsig2_images.part000000000031/CCDC64.2_1758_140000_0.011229_0.73906_0.019379.png
                gene_name: CCDC64
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000031
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 31 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4421804: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000032> was used as the working directory.
Started at Wed Oct 24 17:34:39 2012
Results reported at Wed Oct 24 17:42:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000032.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000032.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 32  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000032.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    496.30 sec.
    Max Memory :      5349 MB
    Max Swap   :      7677 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
32
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 32
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 32: processing genes 2806 - 2895
Calculating significance of each gene.
Using projection method.
2806	CCDC64B	1
2807	CCDC65	6.722638e-01
2808	CCDC66	9.635634e-01
2809	CCDC67	1.866875e-01
2810	CCDC68	4.863123e-01
2811	CCDC69	6.659724e-01
2812	CCDC7	5.456850e-01
2813	CCDC70	1
2814	CCDC71	8.213867e-01
2815	CCDC72	1
2816	CCDC73	6.983112e-04
2817	CCDC74A	3.589837e-01
2818	CCDC74B	8.840486e-01
2819	CCDC75	1
2820	CCDC76	2.928979e-01
2821	CCDC77	1
2822	CCDC78	1
2823	CCDC8	9.508448e-01
2824	CCDC80	4.049593e-01
2825	CCDC81	8.935528e-01
2826	CCDC82	8.390345e-01
2827	CCDC83	3.562086e-02
2828	CCDC84	1
2829	CCDC85A	3.021616e-01
2830	CCDC86	1
2831	CCDC87	2.202909e-01
2832	CCDC88A	9.901616e-01
2833	CCDC88B	9.956901e-01
2834	CCDC88C	9.979347e-01
2835	CCDC89	3.140745e-01
2836	CCDC9	9.529887e-01
2837	CCDC90A	5.749870e-01
2838	CCDC90B	4.601764e-01
2839	CCDC91	7.428917e-01
2840	CCDC92	1
2841	CCDC93	1.932663e-01
2842	CCDC94	6.289584e-01
2843	CCDC96	8.854025e-01
2844	CCDC97	3.403965e-01
2845	CCDC99	3.685435e-01
2846	CCHCR1	7.887563e-01
2847	CCIN	5.407955e-01
2848	CCK	4.759857e-01
2849	CCKAR	2.608118e-02
2850	CCKBR	4.376956e-02
2851	CCL1	1
2852	CCL11	1
2853	CCL13	7.927746e-02
2854	CCL14	8.712557e-02
2855	CCL15	1.686602e-02
2856	CCL16	1
2857	CCL17	3.950713e-01
2858	CCL18	2.033928e-01
2859	CCL19	1
2860	CCL2	1
2861	CCL20	4.286637e-01
2862	CCL21	1
2863	CCL22	4.351242e-01
2864	CCL23	3.473528e-01
2865	CCL24	1
2866	CCL25	3.668145e-01
2867	CCL26	1
2868	CCL27	1
2869	CCL28	1.014146e-02
2870	CCL3	2.160099e-01
2871	CCL4	3.238845e-01
2872	CCL5	1
2873	CCL7	4.851457e-01
2874	CCL8	1
2875	CCM2	7.413419e-01
2876	CCNA1	1
2877	CCNA2	1.774034e-01
2878	CCNB1	8.114986e-01
2879	CCNB1IP1	6.338949e-01
2880	CCNB2	7.751129e-01
2881	CCNB3	9.487603e-01
2882	CCNC	4.768881e-01
2883	CCND1	4.201852e-01
2884	CCND2	8.431948e-01
2885	CCND3	8.378455e-01
2886	CCNDBP1	7.894273e-01
2887	CCNE1	3.648791e-01
2888	CCNE2	1
2889	CCNF	9.756736e-01
2890	CCNG1	2.914166e-01
2891	CCNG2	1
2892	CCNH	7.087040e-01
2893	CCNI	4.894508e-01
2894	CCNI2	1
2895	CCNJ	9.216081e-01
Done

Running MutSig 2:
Scatter job 32: processing genes 2806 - 2895
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
Cons ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
KS ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
CCDC73   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.648000e-01   p_cons 1.332000e-01   p_joint 7.150000e-02

Joint ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
Cons ci ratio: 7.165781e-02	ci left: 1.254666e-01	ci right 1.348412e-01	k: 2602	n:20000
KS ci ratio: 6.268436e-02	ci left: 1.583988e-01	ci right 1.686992e-01	k: 3270	n:20000
CCDC73   20000 perm   8 sec   (2622 perm/sec)   p_kst 1.635000e-01   p_cons 1.301000e-01   p_joint 1.043000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC73.14_3308_20000_0.1635_0.1301_0.1043.png
                gene_name: CCDC73
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
CCNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
Cons ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
KS ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
CCNB3   10000 perm   2 sec   (4430 perm/sec)   p_kst 4.463000e-01   p_cons 4.356000e-01   p_joint 5.291000e-01

Outputting figure to mutsig2_images.part000000000032/CCNB3.13_4232_10000_0.4463_0.4356_0.5291.png
                gene_name: CCNB3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 5 percent done.
CCKBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
Cons ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
KS ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
CCKBR   10000 perm   2 sec   (5279 perm/sec)   p_kst 8.830000e-02   p_cons 2.319000e-01   p_joint 1.429000e-01

Joint ci ratio: 7.052524e-02	ci left: 1.290611e-01	ci right 1.385456e-01	k: 2675	n:20000
Cons ci ratio: 4.838376e-02	ci left: 2.410848e-01	ci right 2.530889e-01	k: 4941	n:20000
KS ci ratio: 8.694855e-02	ci left: 8.822495e-02	ci right 9.629404e-02	k: 1844	n:20000
CCKBR   20000 perm   4 sec   (4706 perm/sec)   p_kst 9.220000e-02   p_cons 2.470500e-01   p_joint 1.337500e-01

Outputting figure to mutsig2_images.part000000000032/CCKBR.11_1364_20000_0.0922_0.24705_0.13375.png
                gene_name: CCKBR
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 8 percent done.
CCDC87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
Cons ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
KS ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
CCDC87   10000 perm   2 sec   (4769 perm/sec)   p_kst 3.864000e-01   p_cons 9.436000e-01   p_joint 5.773000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC87.9_2554_10000_0.3864_0.9436_0.5773.png
                gene_name: CCDC87
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 10 percent done.
CCDC88A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
CCDC88A   10000 perm   3 sec   (3878 perm/sec)   p_kst 1.170000e-02   p_cons 9.140000e-02   p_joint 3.300000e-02

Joint ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
Cons ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
KS ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
CCDC88A   20000 perm   6 sec   (3611 perm/sec)   p_kst 1.320000e-02   p_cons 8.885000e-02   p_joint 2.675000e-02

Joint ci ratio: 1.435090e-01	ci left: 2.252279e-02	ci right 2.603684e-02	k: 727	n:30000
Cons ci ratio: 7.287287e-02	ci left: 8.475205e-02	ci right 9.119467e-02	k: 2638	n:30000
KS ci ratio: 1.979722e-01	ci left: 1.162205e-02	ci right 1.420689e-02	k: 386	n:30000
CCDC88A   30000 perm   9 sec   (3471 perm/sec)   p_kst 1.286667e-02   p_cons 8.793333e-02   p_joint 2.423333e-02

Joint ci ratio: 1.409289e-01	ci left: 1.763632e-02	ci right 2.033415e-02	k: 758	n:40000
Cons ci ratio: 6.318547e-02	ci left: 8.499482e-02	ci right 9.056519e-02	k: 3510	n:40000
KS ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
CCDC88A   40000 perm   12 sec   (3360 perm/sec)   p_kst 1.332500e-02   p_cons 8.775000e-02   p_joint 1.895000e-02

Joint ci ratio: 1.355958e-01	ci left: 1.532422e-02	ci right 1.757243e-02	k: 821	n:50000
Cons ci ratio: 5.677589e-02	ci left: 8.456342e-02	ci right 8.952465e-02	k: 4351	n:50000
KS ci ratio: 1.498575e-01	ci left: 1.248753e-02	ci right 1.452953e-02	k: 674	n:50000
CCDC88A   50000 perm   15 sec   (3305 perm/sec)   p_kst 1.348000e-02   p_cons 8.702000e-02   p_joint 1.642000e-02

Joint ci ratio: 1.014770e-01	ci left: 2.303389e-02	ci right 2.551242e-02	k: 1455	n:60000
Cons ci ratio: 5.205546e-02	ci left: 8.409777e-02	ci right 8.860900e-02	k: 5180	n:60000
KS ci ratio: 1.380149e-01	ci left: 1.235035e-02	ci right 1.419718e-02	k: 795	n:60000
CCDC88A   60000 perm   18 sec   (3254 perm/sec)   p_kst 1.325000e-02   p_cons 8.633333e-02   p_joint 2.425000e-02

Joint ci ratio: 1.145896e-01	ci left: 1.549984e-02	ci right 1.739770e-02	k: 1150	n:70000
Cons ci ratio: 4.828371e-02	ci left: 8.397551e-02	ci right 8.814460e-02	k: 6023	n:70000
KS ci ratio: 1.279634e-01	ci left: 1.238144e-02	ci right 1.408783e-02	k: 925	n:70000
CCDC88A   70000 perm   22 sec   (3205 perm/sec)   p_kst 1.321429e-02   p_cons 8.604286e-02   p_joint 1.642857e-02

Joint ci ratio: 9.161005e-02	ci left: 2.134900e-02	ci right 2.341084e-02	k: 1789	n:80000
Cons ci ratio: 4.518172e-02	ci left: 8.405363e-02	ci right 8.795146e-02	k: 6879	n:80000
KS ci ratio: 1.200030e-01	ci left: 1.237205e-02	ci right 1.396354e-02	k: 1052	n:80000
CCDC88A   80000 perm   25 sec   (3163 perm/sec)   p_kst 1.315000e-02   p_cons 8.598750e-02   p_joint 2.236250e-02

Joint ci ratio: 9.032080e-02	ci left: 1.957328e-02	ci right 2.143558e-02	k: 1844	n:90000
Cons ci ratio: 4.263694e-02	ci left: 8.402208e-02	ci right 8.769355e-02	k: 7726	n:90000
KS ci ratio: 1.134131e-01	ci left: 1.235652e-02	ci right 1.385288e-02	k: 1178	n:90000
CCDC88A   90000 perm   29 sec   (3118 perm/sec)   p_kst 1.308889e-02   p_cons 8.584444e-02   p_joint 2.048889e-02

Joint ci ratio: 9.132728e-02	ci left: 1.726318e-02	ci right 1.892494e-02	k: 1808	n:100000
Cons ci ratio: 4.051756e-02	ci left: 8.385320e-02	ci right 8.733088e-02	k: 8558	n:100000
KS ci ratio: 1.072206e-01	ci left: 1.248230e-02	ci right 1.390614e-02	k: 1318	n:100000
CCDC88A   100000 perm   32 sec   (3081 perm/sec)   p_kst 1.318000e-02   p_cons 8.558000e-02   p_joint 1.808000e-02

Joint ci ratio: 8.809484e-02	ci left: 1.690229e-02	ci right 1.846875e-02	k: 1944	n:110000
Cons ci ratio: 3.874212e-02	ci left: 8.349352e-02	ci right 8.680112e-02	k: 9365	n:110000
KS ci ratio: 1.025141e-01	ci left: 1.244525e-02	ci right 1.379879e-02	k: 1442	n:110000
CCDC88A   110000 perm   36 sec   (3045 perm/sec)   p_kst 1.310909e-02   p_cons 8.513636e-02   p_joint 1.767273e-02

Joint ci ratio: 8.534944e-02	ci left: 1.653716e-02	ci right 1.801963e-02	k: 2072	n:120000
Cons ci ratio: 3.703230e-02	ci left: 8.381635e-02	ci right 8.698706e-02	k: 10247	n:120000
KS ci ratio: 9.844112e-02	ci left: 1.239925e-02	ci right 1.369111e-02	k: 1564	n:120000
CCDC88A   120000 perm   40 sec   (3009 perm/sec)   p_kst 1.303333e-02   p_cons 8.539167e-02   p_joint 1.726667e-02

Outputting figure to mutsig2_images.part000000000032/CCDC88A.9_5744_120000_0.013033_0.085392_0.017267.png
                gene_name: CCDC88A
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 12 percent done.
CCDC80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
CCDC80   10000 perm   2 sec   (4834 perm/sec)   p_kst 5.930000e-01   p_cons 5.609000e-01   p_joint 7.095000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC80.7_2881_10000_0.593_0.5609_0.7095.png
                gene_name: CCDC80
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 15 percent done.
CCHCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
Cons ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
KS ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
CCHCR1   10000 perm   2 sec   (5028 perm/sec)   p_kst 3.403000e-01   p_cons 1.593000e-01   p_joint 4.524000e-01

Outputting figure to mutsig2_images.part000000000032/CCHCR1.7_2688_10000_0.3403_0.1593_0.4524.png
                gene_name: CCHCR1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 18 percent done.
CCKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
Cons ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
KS ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
CCKAR   10000 perm   2 sec   (5247 perm/sec)   p_kst 6.402000e-01   p_cons 7.614000e-01   p_joint 8.216000e-01

Outputting figure to mutsig2_images.part000000000032/CCKAR.7_1307_10000_0.6402_0.7614_0.8216.png
                gene_name: CCKAR
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 20 percent done.
CCDC83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
Cons ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
CCDC83   10000 perm   2 sec   (5998 perm/sec)   p_kst 6.743000e-01   p_cons 2.785000e-01   p_joint 5.722000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC83.6_1379_10000_0.6743_0.2785_0.5722.png
                gene_name: CCDC83
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 22 percent done.
CCDC93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
Cons ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
KS ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
CCDC93   10000 perm   2 sec   (5528 perm/sec)   p_kst 2.380000e-01   p_cons 2.888000e-01   p_joint 2.228000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC93.6_1992_10000_0.238_0.2888_0.2228.png
                gene_name: CCDC93
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 25 percent done.
CCDC67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
Cons ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
KS ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
CCDC67   10000 perm   2 sec   (5624 perm/sec)   p_kst 4.746000e-01   p_cons 5.701000e-01   p_joint 8.373000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC67.5_1867_10000_0.4746_0.5701_0.8373.png
                gene_name: CCDC67
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 28 percent done.
CCDC99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
Cons ci ratio: 9.602481e-04	ci left: 9.988336e-01	ci right 9.998376e-01	k: 9995	n:10000
KS ci ratio: 2.666089e-02	ci left: 6.744830e-01	ci right 6.928099e-01	k: 6837	n:10000
CCDC99   10000 perm   2 sec   (5325 perm/sec)   p_kst 6.837000e-01   p_cons 9.995000e-01   p_joint 8.647000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC99.5_1862_10000_0.6837_0.9995_0.8647.png
                gene_name: CCDC99
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 30 percent done.
CCDC76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
CCDC76   10000 perm   2 sec   (5658 perm/sec)   p_kst 9.589000e-01   p_cons 1.897000e-01   p_joint 5.388000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC76.4_1490_10000_0.9589_0.1897_0.5388.png
                gene_name: CCDC76
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 32 percent done.
CCDC85A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
Cons ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
KS ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
CCDC85A   10000 perm   2 sec   (5834 perm/sec)   p_kst 4.811000e-01   p_cons 6.532000e-01   p_joint 6.039000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC85A.4_1686_10000_0.4811_0.6532_0.6039.png
                gene_name: CCDC85A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
CCDC97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
Cons ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
CCDC97   10000 perm   2 sec   (5987 perm/sec)   p_kst 8.450000e-02   p_cons 2.790000e-02   p_joint 5.060000e-02

Joint ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
Cons ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KS ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
CCDC97   20000 perm   4 sec   (5376 perm/sec)   p_kst 8.675000e-02   p_cons 2.800000e-02   p_joint 3.265000e-02

Joint ci ratio: 1.073342e-01	ci left: 4.027750e-02	ci right 4.487829e-02	k: 1276	n:30000
Cons ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
KS ci ratio: 7.231838e-02	ci left: 8.596505e-02	ci right 9.244809e-02	k: 2675	n:30000
CCDC97   30000 perm   6 sec   (5099 perm/sec)   p_kst 8.916667e-02   p_cons 2.796667e-02   p_joint 4.253333e-02

Joint ci ratio: 1.010238e-01	ci left: 3.443953e-02	ci right 3.812818e-02	k: 1450	n:40000
Cons ci ratio: 1.167731e-01	ci left: 2.579781e-02	ci right 2.902129e-02	k: 1095	n:40000
KS ci ratio: 6.255280e-02	ci left: 8.659664e-02	ci right 9.221313e-02	k: 3575	n:40000
CCDC97   40000 perm   8 sec   (4945 perm/sec)   p_kst 8.937500e-02   p_cons 2.737500e-02   p_joint 3.625000e-02

Joint ci ratio: 1.055596e-01	ci left: 2.542144e-02	ci right 2.827385e-02	k: 1341	n:50000
Cons ci ratio: 1.056001e-01	ci left: 2.540195e-02	ci right 2.825334e-02	k: 1340	n:50000
KS ci ratio: 5.575067e-02	ci left: 8.746591e-02	ci right 9.250181e-02	k: 4498	n:50000
CCDC97   50000 perm   10 sec   (4796 perm/sec)   p_kst 8.996000e-02   p_cons 2.680000e-02   p_joint 2.682000e-02

Joint ci ratio: 8.847088e-02	ci left: 3.027987e-02	ci right 3.309900e-02	k: 1900	n:60000
Cons ci ratio: 9.238293e-02	ci left: 2.778582e-02	ci right 3.049331e-02	k: 1747	n:60000
KS ci ratio: 5.202798e-02	ci left: 8.418012e-02	ci right 8.869331e-02	k: 5185	n:60000
CCDC97   60000 perm   13 sec   (4689 perm/sec)   p_kst 8.641667e-02   p_cons 2.911667e-02   p_joint 3.166667e-02

Outputting figure to mutsig2_images.part000000000032/CCDC97.4_1052_60000_0.086417_0.029117_0.031667.png
                gene_name: CCDC97
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 38 percent done.
CCIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
CCIN   10000 perm   2 sec   (5518 perm/sec)   p_kst 3.917000e-01   p_cons 5.060000e-01   p_joint 6.512000e-01

Outputting figure to mutsig2_images.part000000000032/CCIN.4_1771_10000_0.3917_0.506_0.6512.png
                gene_name: CCIN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 40 percent done.
CCL28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
Cons ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
KS ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
CCL28   10000 perm   2 sec   (6273 perm/sec)   p_kst 3.446000e-01   p_cons 5.592000e-01   p_joint 4.797000e-01

Outputting figure to mutsig2_images.part000000000032/CCL28.4_396_10000_0.3446_0.5592_0.4797.png
                gene_name: CCL28
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 42 percent done.
CCNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
KS ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
CCNA2   10000 perm   2 sec   (6289 perm/sec)   p_kst 1.506000e-01   p_cons 1.224000e-01   p_joint 2.178000e-01

Joint ci ratio: 7.143713e-02	ci left: 1.261559e-01	ci right 1.355517e-01	k: 2616	n:20000
Cons ci ratio: 7.565317e-02	ci left: 1.138548e-01	ci right 1.228565e-01	k: 2366	n:20000
KS ci ratio: 6.501634e-02	ci left: 1.487765e-01	ci right 1.588244e-01	k: 3075	n:20000
CCNA2   20000 perm   4 sec   (5577 perm/sec)   p_kst 1.537500e-01   p_cons 1.183000e-01   p_joint 1.308000e-01

Outputting figure to mutsig2_images.part000000000032/CCNA2.4_1331_20000_0.15375_0.1183_0.1308.png
                gene_name: CCNA2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
CCDC65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
Cons ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
KS ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
CCDC65   10000 perm   2 sec   (5967 perm/sec)   p_kst 4.955000e-01   p_cons 2.506000e-01   p_joint 5.438000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC65.3_1487_10000_0.4955_0.2506_0.5438.png
                gene_name: CCDC65
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
CCDC71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
KS ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
CCDC71   10000 perm   2 sec   (6042 perm/sec)   p_kst 6.172000e-01   p_cons 7.402000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC71.3_1408_10000_0.6172_0.7402_1.png
                gene_name: CCDC71
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CCDC74A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
Cons ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
KS ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
CCDC74A   10000 perm   1 sec   (6723 perm/sec)   p_kst 2.362000e-01   p_cons 9.774000e-01   p_joint 4.611000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC74A.3_1169_10000_0.2362_0.9774_0.4611.png
                gene_name: CCDC74A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 52 percent done.
CCDC88B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
Cons ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
CCDC88B   10000 perm   2 sec   (5017 perm/sec)   p_kst 3.300000e-01   p_cons 9.922000e-01   p_joint 6.583000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC88B.3_4539_10000_0.33_0.9922_0.6583.png
                gene_name: CCDC88B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 55 percent done.
CCDC88C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.923333e-02	ci left: 4.896515e-01	ci right 5.093488e-01	k: 4995	n:10000
Cons ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
KS ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
CCDC88C   10000 perm   2 sec   (4397 perm/sec)   p_kst 3.326000e-01   p_cons 6.258000e-01   p_joint 4.995000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC88C.3_6207_10000_0.3326_0.6258_0.4995.png
                gene_name: CCDC88C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 57 percent done.
CCDC89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
Cons ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
KS ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
CCDC89   10000 perm   1 sec   (6787 perm/sec)   p_kst 2.885000e-01   p_cons 5.319000e-01   p_joint 4.544000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC89.3_1129_10000_0.2885_0.5319_0.4544.png
                gene_name: CCDC89
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 60 percent done.
CCL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
Cons ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
KS ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
CCL15   10000 perm   2 sec   (6188 perm/sec)   p_kst 4.037000e-01   p_cons 6.816000e-01   p_joint 6.203000e-01

Outputting figure to mutsig2_images.part000000000032/CCL15.3_358_10000_0.4037_0.6816_0.6203.png
                gene_name: CCL15
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 62 percent done.
CCNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
KS ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
CCNE1   10000 perm   2 sec   (6037 perm/sec)   p_kst 3.541000e-01   p_cons 8.620000e-02   p_joint 3.194000e-01

Joint ci ratio: 4.214493e-02	ci left: 2.955417e-01	ci right 3.083159e-01	k: 6038	n:20000
Cons ci ratio: 9.047721e-02	ci left: 8.190496e-02	ci right 8.971595e-02	k: 1715	n:20000
KS ci ratio: 3.779075e-02	ci left: 3.431380e-01	ci right 3.564057e-01	k: 6995	n:20000
CCNE1   20000 perm   4 sec   (5370 perm/sec)   p_kst 3.497500e-01   p_cons 8.575000e-02   p_joint 3.019000e-01

Outputting figure to mutsig2_images.part000000000032/CCNE1.3_1277_20000_0.34975_0.08575_0.3019.png
                gene_name: CCNE1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 65 percent done.
CCDC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
CCDC66   10000 perm   2 sec   (5721 perm/sec)   p_kst 2.236000e-01   p_cons 6.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC66.2_2919_10000_0.2236_0.6631_1.png
                gene_name: CCDC66
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CCDC68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
Cons ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
KS ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
CCDC68   10000 perm   2 sec   (6408 perm/sec)   p_kst 1.385000e-01   p_cons 1.372000e-01   p_joint 1.006000e-01

Joint ci ratio: 6.934809e-02	ci left: 1.329523e-01	ci right 1.425533e-01	k: 2754	n:20000
Cons ci ratio: 6.967104e-02	ci left: 1.318685e-01	ci right 1.414374e-01	k: 2732	n:20000
KS ci ratio: 6.912998e-02	ci left: 1.336913e-01	ci right 1.433141e-01	k: 2769	n:20000
CCDC68   20000 perm   3 sec   (5749 perm/sec)   p_kst 1.384500e-01   p_cons 1.366000e-01   p_joint 1.377000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC68.2_1048_20000_0.13845_0.1366_0.1377.png
                gene_name: CCDC68
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 70 percent done.
CCDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
Cons ci ratio: 2.092186e-02	ci left: 7.700281e-01	ci right 7.864095e-01	k: 7783	n:10000
KS ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
CCDC7   10000 perm   2 sec   (6347 perm/sec)   p_kst 6.266000e-01   p_cons 7.783000e-01   p_joint 7.694000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC7.2_1529_10000_0.6266_0.7783_0.7694.png
                gene_name: CCDC7
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 72 percent done.
CCDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
KS ci ratio: 8.828742e-03	ci left: 9.474185e-01	ci right 9.559159e-01	k: 9518	n:10000
CCDC8   10000 perm   2 sec   (6287 perm/sec)   p_kst 9.518000e-01   p_cons 8.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC8.2_1621_10000_0.9518_0.8583_1.png
                gene_name: CCDC8
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CCDC81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712913e-02	ci left: 8.323605e-01	ci right 8.468411e-01	k: 8397	n:10000
Cons ci ratio: 1.586443e-02	ci left: 8.523304e-01	ci right 8.660597e-01	k: 8593	n:10000
KS ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
CCDC81   10000 perm   2 sec   (6173 perm/sec)   p_kst 3.119000e-01   p_cons 8.593000e-01   p_joint 8.397000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC81.2_2019_10000_0.3119_0.8593_0.8397.png
                gene_name: CCDC81
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
CCDC90B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
Cons ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
KS ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
CCDC90B   10000 perm   2 sec   (6632 perm/sec)   p_kst 4.506000e-01   p_cons 1.250000e-02   p_joint 1.610000e-02

Joint ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
Cons ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
KS ci ratio: 2.956856e-02	ci left: 4.607651e-01	ci right 4.746443e-01	k: 9354	n:20000
CCDC90B   20000 perm   3 sec   (5896 perm/sec)   p_kst 4.677000e-01   p_cons 1.265000e-02   p_joint 2.335000e-02

Joint ci ratio: 1.317389e-01	ci left: 2.677524e-02	ci right 3.058344e-02	k: 859	n:30000
Cons ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
KS ci ratio: 2.419345e-02	ci left: 4.610081e-01	ci right 4.723317e-01	k: 14000	n:30000
CCDC90B   30000 perm   5 sec   (5654 perm/sec)   p_kst 4.666667e-01   p_cons 1.320000e-02   p_joint 2.863333e-02

Joint ci ratio: 1.218393e-01	ci left: 2.368610e-02	ci right 2.678335e-02	k: 1008	n:40000
Cons ci ratio: 1.709469e-01	ci left: 1.186501e-02	ci right 1.410652e-02	k: 518	n:40000
KS ci ratio: 2.095628e-02	ci left: 4.616761e-01	ci right 4.714787e-01	k: 18663	n:40000
CCDC90B   40000 perm   7 sec   (5488 perm/sec)   p_kst 4.665750e-01   p_cons 1.295000e-02   p_joint 2.520000e-02

Joint ci ratio: 1.306719e-01	ci left: 1.652358e-02	ci right 1.885290e-02	k: 883	n:50000
Cons ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
KS ci ratio: 1.874158e-02	ci left: 4.622592e-01	ci right 4.710247e-01	k: 23332	n:50000
CCDC90B   50000 perm   9 sec   (5336 perm/sec)   p_kst 4.666400e-01   p_cons 1.246000e-02   p_joint 1.766000e-02

Joint ci ratio: 1.175392e-01	ci left: 1.712924e-02	ci right 1.928439e-02	k: 1091	n:60000
Cons ci ratio: 1.423357e-01	ci left: 1.159416e-02	ci right 1.338679e-02	k: 748	n:60000
KS ci ratio: 1.709064e-02	ci left: 4.631679e-01	ci right 4.711686e-01	k: 28030	n:60000
CCDC90B   60000 perm   12 sec   (5209 perm/sec)   p_kst 4.671667e-01   p_cons 1.246667e-02   p_joint 1.818333e-02

Joint ci ratio: 9.756150e-02	ci left: 2.144195e-02	ci right 2.365502e-02	k: 1577	n:70000
Cons ci ratio: 1.324570e-01	ci left: 1.153806e-02	ci right 1.318845e-02	k: 864	n:70000
KS ci ratio: 1.580780e-02	ci left: 4.639409e-01	ci right 4.713475e-01	k: 32735	n:70000
CCDC90B   70000 perm   14 sec   (5084 perm/sec)   p_kst 4.676429e-01   p_cons 1.234286e-02   p_joint 2.252857e-02

Joint ci ratio: 9.256670e-02	ci left: 2.090915e-02	ci right 2.295073e-02	k: 1753	n:80000
Cons ci ratio: 1.243855e-01	ci left: 1.149923e-02	ci right 1.303644e-02	k: 980	n:80000
KS ci ratio: 1.478667e-02	ci left: 4.641875e-01	ci right 4.711149e-01	k: 37412	n:80000
CCDC90B   80000 perm   16 sec   (4979 perm/sec)   p_kst 4.676500e-01   p_cons 1.225000e-02   p_joint 2.191250e-02

Joint ci ratio: 8.427041e-02	ci left: 2.248749e-02	ci right 2.447672e-02	k: 2112	n:90000
Cons ci ratio: 1.158261e-01	ci left: 1.183830e-02	ci right 1.330448e-02	k: 1130	n:90000
KS ci ratio: 1.393435e-02	ci left: 4.646245e-01	ci right 4.711553e-01	k: 42110	n:90000
CCDC90B   90000 perm   18 sec   (4873 perm/sec)   p_kst 4.678889e-01   p_cons 1.255556e-02   p_joint 2.346667e-02

Joint ci ratio: 9.641928e-02	ci left: 1.547541e-02	ci right 1.705282e-02	k: 1625	n:100000
Cons ci ratio: 1.102233e-01	ci left: 1.180110e-02	ci right 1.318739e-02	k: 1248	n:100000
KS ci ratio: 1.321795e-02	ci left: 4.648434e-01	ci right 4.710385e-01	k: 46794	n:100000
CCDC90B   100000 perm   21 sec   (4781 perm/sec)   p_kst 4.679400e-01   p_cons 1.248000e-02   p_joint 1.625000e-02

Joint ci ratio: 7.473582e-02	ci left: 2.348732e-02	ci right 2.531969e-02	k: 2683	n:110000
Cons ci ratio: 1.047815e-01	ci left: 1.190490e-02	ci right 1.323007e-02	k: 1381	n:110000
KS ci ratio: 1.259925e-02	ci left: 4.651294e-01	ci right 4.710359e-01	k: 51489	n:110000
CCDC90B   110000 perm   23 sec   (4688 perm/sec)   p_kst 4.680818e-01   p_cons 1.255455e-02   p_joint 2.439091e-02

Joint ci ratio: 8.914433e-02	ci left: 1.515090e-02	ci right 1.657263e-02	k: 1902	n:120000
Cons ci ratio: 1.005790e-01	ci left: 1.187090e-02	ci right 1.313616e-02	k: 1499	n:120000
KS ci ratio: 1.206608e-02	ci left: 4.651235e-01	ci right 4.707781e-01	k: 56154	n:120000
CCDC90B   120000 perm   26 sec   (4602 perm/sec)   p_kst 4.679500e-01   p_cons 1.249167e-02   p_joint 1.585000e-02

Joint ci ratio: 7.388774e-02	ci left: 2.040869e-02	ci right 2.198200e-02	k: 2754	n:130000
Cons ci ratio: 9.654298e-02	ci left: 1.191812e-02	ci right 1.313454e-02	k: 1627	n:130000
KS ci ratio: 1.159765e-02	ci left: 4.650230e-01	ci right 4.704553e-01	k: 60806	n:130000
CCDC90B   130000 perm   29 sec   (4516 perm/sec)   p_kst 4.677385e-01   p_cons 1.251538e-02   p_joint 2.118462e-02

Outputting figure to mutsig2_images.part000000000032/CCDC90B.2_801_130000_0.46774_0.012515_0.021185.png
                gene_name: CCDC90B
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 80 percent done.
CCDC91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
Cons ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
KS ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
CCDC91   10000 perm   2 sec   (6581 perm/sec)   p_kst 7.062000e-01   p_cons 3.666000e-01   p_joint 9.675000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC91.2_1374_10000_0.7062_0.3666_0.9675.png
                gene_name: CCDC91
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
CCL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
CCL13   10000 perm   1 sec   (7220 perm/sec)   p_kst 5.935000e-01   p_cons 9.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCL13.2_309_10000_0.5935_0.9442_1.png
                gene_name: CCL13
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CCL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
KS ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
CCL14   10000 perm   1 sec   (7192 perm/sec)   p_kst 6.436000e-01   p_cons 2.934000e-01   p_joint 3.812000e-01

Outputting figure to mutsig2_images.part000000000032/CCL14.2_346_10000_0.6436_0.2934_0.3812.png
                gene_name: CCL14
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 88 percent done.
CCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
CCM2   10000 perm   1 sec   (6761 perm/sec)   p_kst 5.891000e-01   p_cons 5.762000e-01   p_joint 6.055000e-01

Outputting figure to mutsig2_images.part000000000032/CCM2.2_1472_10000_0.5891_0.5762_0.6055.png
                gene_name: CCM2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 90 percent done.
CCNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
CCNA1   10000 perm   2 sec   (6337 perm/sec)   p_kst 4.529000e-01   p_cons 5.359000e-01   p_joint 8.611000e-01

Outputting figure to mutsig2_images.part000000000032/CCNA1.2_1434_10000_0.4529_0.5359_0.8611.png
                gene_name: CCNA1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 92 percent done.
CCND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
CCND1   10000 perm   2 sec   (6629 perm/sec)   p_kst 7.404000e-01   p_cons 9.885000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCND1.2_908_10000_0.7404_0.9885_1.png
                gene_name: CCND1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 1.656605e-02	ci left: 8.413215e-01	ci right 8.554749e-01	k: 8485	n:10000
CCNG1   10000 perm   1 sec   (6956 perm/sec)   p_kst 8.485000e-01   p_cons 3.073000e-01   p_joint 9.126000e-01

Outputting figure to mutsig2_images.part000000000032/CCNG1.2_908_10000_0.8485_0.3073_0.9126.png
                gene_name: CCNG1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
CCNI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
KS ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
CCNI   10000 perm   1 sec   (6783 perm/sec)   p_kst 7.408000e-01   p_cons 2.380000e-01   p_joint 2.372000e-01

Outputting figure to mutsig2_images.part000000000032/CCNI.2_1158_10000_0.7408_0.238_0.2372.png
                gene_name: CCNI
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000032
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 32 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 4421806: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000033> was used as the working directory.
Started at Wed Oct 24 17:34:39 2012
Results reported at Wed Oct 24 17:44:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000033.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000033.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 33  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000033.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    609.10 sec.
    Max Memory :      5274 MB
    Max Swap   :      7698 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
33
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 33
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 33: processing genes 2896 - 2986
Calculating significance of each gene.
Using projection method.
2896	CCNJL	4.820044e-01
2897	CCNK	1
2898	CCNL1	8.326268e-01
2899	CCNL2	1
2900	CCNO	3.236310e-01
2901	CCNT1	9.249988e-01
2902	CCNT2	5.085132e-01
2903	CCNY	5.539411e-01
2904	CCNYL1	5.713595e-01
2905	CCPG1	9.834808e-01
2906	CCR1	5.836162e-01
2907	CCR10	1
2908	CCR2	2.664300e-01
2909	CCR3	5.111846e-01
2910	CCR4	5.810981e-01
2911	CCR5	7.799739e-01
2912	CCR6	6.168755e-01
2913	CCR7	1
2914	CCR8	7.106798e-02
2915	CCR9	1
2916	CCRL1	3.817938e-01
2917	CCRL2	8.958069e-01
2918	CCRN4L	8.120849e-01
2919	CCS	8.174906e-01
2920	CCT2	6.034184e-01
2921	CCT3	9.536018e-01
2922	CCT4	2.361190e-01
2923	CCT5	8.818446e-01
2924	CCT6A	2.698113e-01
2925	CCT6B	7.395992e-03
2926	CCT7	8.751777e-01
2927	CCT8	1
2928	CCT8L2	1
2929	CD101	9.980600e-01
2930	CD109	9.768032e-01
2931	CD14	7.790466e-01
2932	CD151	1
2933	CD160	1
2934	CD163	1.544179e-02
2935	CD163L1	2.996395e-01
2936	CD164	5.628530e-01
2937	CD164L2	1
2938	CD177	1.145337e-01
2939	CD180	1
2940	CD19	7.455200e-01
2941	CD1A	2.091531e-03
2942	CD1B	1.491312e-02
2943	CD1C	1.276733e-02
2944	CD1D	7.517449e-01
2945	CD1E	2.840141e-01
2946	CD2	8.683709e-01
2947	CD200	5.483471e-01
2948	CD200R1	1.593591e-01
2949	CD200R1L	1.555667e-01
2950	CD207	3.325901e-01
2951	CD209	3.432419e-01
2952	CD22	9.450200e-01
2953	CD226	1.263936e-03
2954	CD244	2.977248e-02
2955	CD247	1
2956	CD248	4.708705e-01
2957	CD27	5.833569e-01
2958	CD274	2.221897e-01
2959	CD276	9.572858e-01
2960	CD28	6.196711e-01
2961	CD2AP	7.327011e-01
2962	CD2BP2	6.284814e-01
2963	CD300A	5.509767e-01
2964	CD300C	9.381757e-02
2965	CD300E	5.497057e-01
2966	CD300LB	1.887292e-02
2967	CD300LD	1
2968	CD300LF	7.890652e-01
2969	CD300LG	8.044037e-01
2970	CD302	1
2971	CD320	1
2972	CD33	1.688750e-03
2973	CD34	1.382260e-01
2974	CD36	5.011876e-01
2975	CD37	1
2976	CD38	2.609571e-01
2977	CD3D	1.890925e-01
2978	CD3E	1
2979	CD3EAP	8.244577e-01
2980	CD3G	1
2981	CD4	3.796010e-01
2982	CD40	1
2983	CD40LG	6.662692e-03
2984	CD44	1
2985	CD46	8.133668e-01
2986	CD47	5.987050e-01
Done

Running MutSig 2:
Scatter job 33: processing genes 2896 - 2986
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CD163L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 3.141317e-02	ci left: 5.992548e-01	ci right 6.184817e-01	k: 6089	n:10000
KS ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
CD163L1   10000 perm   2 sec   (4367 perm/sec)   p_kst 7.413000e-01   p_cons 6.089000e-01   p_joint 8.751000e-01

Outputting figure to mutsig2_images.part000000000033/CD163L1.20_4438_10000_0.7413_0.6089_0.8751.png
                gene_name: CD163L1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 2 percent done.
CCT8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
KS ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
CCT8L2   10000 perm   2 sec   (6004 perm/sec)   p_kst 5.038000e-01   p_cons 6.784000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT8L2.16_1678_10000_0.5038_0.6784_1.png
                gene_name: CCT8L2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
CD163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
Cons ci ratio: 1.336598e-02	ci left: 8.897487e-01	ci right 9.018196e-01	k: 8959	n:10000
KS ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
CD163   10000 perm   2 sec   (4831 perm/sec)   p_kst 6.196000e-01   p_cons 8.959000e-01   p_joint 9.113000e-01

Outputting figure to mutsig2_images.part000000000033/CD163.15_3535_10000_0.6196_0.8959_0.9113.png
                gene_name: CD163
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 5 percent done.
CD1E
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
Cons ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
KS ci ratio: 8.633875e-02	ci left: 1.634706e-01	ci right 1.783216e-01	k: 1708	n:10000
CD1E   10000 perm   2 sec   (5692 perm/sec)   p_kst 1.708000e-01   p_cons 6.620000e-02   p_joint 1.444000e-01

Joint ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 6.183878e-02	ci left: 1.621015e-01	ci right 1.724955e-01	k: 3345	n:20000
CD1E   20000 perm   4 sec   (5156 perm/sec)   p_kst 1.672500e-01   p_cons 6.595000e-02   p_joint 8.995000e-02

Joint ci ratio: 7.417469e-02	ci left: 8.199892e-02	ci right 8.834835e-02	k: 2554	n:30000
Cons ci ratio: 8.418544e-02	ci left: 6.455561e-02	ci right 7.026185e-02	k: 2021	n:30000
KS ci ratio: 5.105437e-02	ci left: 1.600240e-01	ci right 1.684412e-01	k: 4926	n:30000
CD1E   30000 perm   6 sec   (4978 perm/sec)   p_kst 1.642000e-01   p_cons 6.736667e-02   p_joint 8.513333e-02

Outputting figure to mutsig2_images.part000000000033/CD1E.11_1191_30000_0.1642_0.067367_0.085133.png
                gene_name: CD1E
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 7 percent done.
CD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
Cons ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
KS ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
CD1B   10000 perm   2 sec   (6062 perm/sec)   p_kst 5.104000e-01   p_cons 4.921000e-01   p_joint 6.940000e-01

Outputting figure to mutsig2_images.part000000000033/CD1B.11_1026_10000_0.5104_0.4921_0.694.png
                gene_name: CD1B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 8 percent done.
CD33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
Cons ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
KS ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
CD33   10000 perm   2 sec   (6126 perm/sec)   p_kst 5.889000e-01   p_cons 2.453000e-01   p_joint 5.817000e-01

Outputting figure to mutsig2_images.part000000000033/CD33.10_1136_10000_0.5889_0.2453_0.5817.png
                gene_name: CD33
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 10 percent done.
CD109
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
Cons ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
KS ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
CD109   10000 perm   2 sec   (5829 perm/sec)   p_kst 3.501000e-01   p_cons 4.366000e-01   p_joint 3.713000e-01

Outputting figure to mutsig2_images.part000000000033/CD109.9_4470_10000_0.3501_0.4366_0.3713.png
                gene_name: CD109
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
CD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
CD1C   10000 perm   1 sec   (6895 perm/sec)   p_kst 1.985000e-01   p_cons 7.470000e-02   p_joint 1.277000e-01

Joint ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
Cons ci ratio: 9.951067e-02	ci left: 6.840617e-02	ci right 7.561886e-02	k: 1439	n:20000
KS ci ratio: 5.528966e-02	ci left: 1.952669e-01	ci right 2.064202e-01	k: 4016	n:20000
CD1C   20000 perm   3 sec   (6088 perm/sec)   p_kst 2.008000e-01   p_cons 7.195000e-02   p_joint 8.265000e-02

Outputting figure to mutsig2_images.part000000000033/CD1C.9_1026_20000_0.2008_0.07195_0.08265.png
                gene_name: CD1C
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 13 percent done.
CCT6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
Cons ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
KS ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
CCT6B   10000 perm   2 sec   (5903 perm/sec)   p_kst 9.075000e-01   p_cons 2.035000e-01   p_joint 8.502000e-01

Outputting figure to mutsig2_images.part000000000033/CCT6B.8_1649_10000_0.9075_0.2035_0.8502.png
                gene_name: CCT6B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 15 percent done.
CD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
CD1A   10000 perm   1 sec   (6938 perm/sec)   p_kst 9.506000e-01   p_cons 7.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD1A.8_1008_10000_0.9506_0.7452_1.png
                gene_name: CD1A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
CD226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
KS ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
CD226   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.962000e-01   p_cons 8.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD226.8_1035_10000_0.7962_0.8572_1.png
                gene_name: CD226
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
CCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
Cons ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
KS ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
CCNT1   10000 perm   2 sec   (6662 perm/sec)   p_kst 1.183000e-01   p_cons 3.669000e-01   p_joint 9.810000e-02

Joint ci ratio: 6.046574e-02	ci left: 1.683734e-01	ci right 1.789217e-01	k: 3472	n:20000
Cons ci ratio: 3.629394e-02	ci left: 3.616595e-01	ci right 3.750788e-01	k: 7367	n:20000
KS ci ratio: 7.712032e-02	ci left: 1.099708e-01	ci right 1.188416e-01	k: 2287	n:20000
CCNT1   20000 perm   3 sec   (5986 perm/sec)   p_kst 1.143500e-01   p_cons 3.683500e-01   p_joint 1.736000e-01

Outputting figure to mutsig2_images.part000000000033/CCNT1.6_2217_20000_0.11435_0.36835_0.1736.png
                gene_name: CCNT1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 20 percent done.
CCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
Cons ci ratio: 5.192847e-02	ci left: 3.534668e-01	ci right 3.724131e-01	k: 3629	n:10000
KS ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
CCR8   10000 perm   2 sec   (6458 perm/sec)   p_kst 9.582000e-01   p_cons 3.629000e-01   p_joint 7.654000e-01

Outputting figure to mutsig2_images.part000000000033/CCR8.6_1072_10000_0.9582_0.3629_0.7654.png
                gene_name: CCR8
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 21 percent done.
CD1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 1.933710e-02	ci left: 7.963859e-01	ci right 8.120365e-01	k: 8043	n:10000
CD1D   10000 perm   1 sec   (6851 perm/sec)   p_kst 8.043000e-01   p_cons 3.184000e-01   p_joint 5.694000e-01

Outputting figure to mutsig2_images.part000000000033/CD1D.6_1032_10000_0.8043_0.3184_0.5694.png
                gene_name: CD1D
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 23 percent done.
CD22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
Cons ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
KS ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
CD22   10000 perm   2 sec   (5710 perm/sec)   p_kst 4.640000e-02   p_cons 1.188000e-01   p_joint 2.830000e-02

Joint ci ratio: 1.665517e-01	ci left: 2.470171e-02	ci right 2.923722e-02	k: 538	n:20000
Cons ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
KS ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
CD22   20000 perm   4 sec   (5202 perm/sec)   p_kst 4.715000e-02   p_cons 1.199000e-01   p_joint 2.690000e-02

Joint ci ratio: 1.091317e-01	ci left: 3.897881e-02	ci right 4.351058e-02	k: 1236	n:30000
Cons ci ratio: 6.244613e-02	ci left: 1.124628e-01	ci right 1.197451e-01	k: 3482	n:30000
KS ci ratio: 1.021000e-01	ci left: 4.443729e-02	ci right 4.925096e-02	k: 1404	n:30000
CD22   30000 perm   6 sec   (4991 perm/sec)   p_kst 4.680000e-02   p_cons 1.160667e-01   p_joint 4.120000e-02

Joint ci ratio: 1.075819e-01	ci left: 3.039416e-02	ci right 3.387419e-02	k: 1284	n:40000
Cons ci ratio: 5.395531e-02	ci left: 1.134208e-01	ci right 1.197350e-01	k: 4662	n:40000
KS ci ratio: 8.781667e-02	ci left: 4.536250e-02	ci right 4.955351e-02	k: 1897	n:40000
CD22   40000 perm   8 sec   (4842 perm/sec)   p_kst 4.742500e-02   p_cons 1.165500e-01   p_joint 3.210000e-02

Joint ci ratio: 8.561491e-02	ci left: 3.851459e-02	ci right 4.197904e-02	k: 2011	n:50000
Cons ci ratio: 4.817386e-02	ci left: 1.141158e-01	ci right 1.197687e-01	k: 5846	n:50000
KS ci ratio: 7.845038e-02	ci left: 4.569115e-02	ci right 4.944160e-02	k: 2377	n:50000
CD22   50000 perm   11 sec   (4731 perm/sec)   p_kst 4.754000e-02   p_cons 1.169200e-01   p_joint 4.022000e-02

Outputting figure to mutsig2_images.part000000000033/CD22.6_2596_50000_0.04754_0.11692_0.04022.png
                gene_name: CD22
               theta_stop: 0.086 
                    nperm: 50000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 25 percent done.
CD244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
Cons ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
KS ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
CD244   10000 perm   2 sec   (6232 perm/sec)   p_kst 9.330000e-02   p_cons 5.088000e-01   p_joint 1.783000e-01

Joint ci ratio: 7.005750e-02	ci left: 1.305879e-01	ci right 1.401184e-01	k: 2706	n:20000
Cons ci ratio: 2.693491e-02	ci left: 5.073467e-01	ci right 5.212492e-01	k: 10286	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
CD244   20000 perm   4 sec   (5638 perm/sec)   p_kst 9.130000e-02   p_cons 5.143000e-01   p_joint 1.353000e-01

Outputting figure to mutsig2_images.part000000000033/CD244.6_1149_20000_0.0913_0.5143_0.1353.png
                gene_name: CD244
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 26 percent done.
CD40LG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
Cons ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
KS ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
CD40LG   10000 perm   2 sec   (6664 perm/sec)   p_kst 3.045000e-01   p_cons 2.900000e-01   p_joint 3.908000e-01

Outputting figure to mutsig2_images.part000000000033/CD40LG.6_806_10000_0.3045_0.29_0.3908.png
                gene_name: CD40LG
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 28 percent done.
CCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273416e-02	ci left: 8.986739e-01	ci right 9.102893e-01	k: 9046	n:10000
Cons ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
KS ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
CCR2   10000 perm   2 sec   (6344 perm/sec)   p_kst 8.088000e-01   p_cons 8.700000e-01   p_joint 9.046000e-01

Outputting figure to mutsig2_images.part000000000033/CCR2.5_1275_10000_0.8088_0.87_0.9046.png
                gene_name: CCR2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 30 percent done.
CCT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
CCT4   10000 perm   2 sec   (6592 perm/sec)   p_kst 9.507000e-01   p_cons 5.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT4.5_1676_10000_0.9507_0.5493_1.png
                gene_name: CCT4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
CCT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
Cons ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
CCT5   10000 perm   2 sec   (6617 perm/sec)   p_kst 2.770000e-02   p_cons 8.124000e-01   p_joint 4.390000e-02

Joint ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
Cons ci ratio: 1.355574e-02	ci left: 8.014610e-01	ci right 8.124496e-01	k: 16140	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
CCT5   20000 perm   3 sec   (5953 perm/sec)   p_kst 2.830000e-02   p_cons 8.070000e-01   p_joint 6.200000e-02

Joint ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
Cons ci ratio: 1.130560e-02	ci left: 7.957306e-01	ci right 8.048112e-01	k: 24009	n:30000
KS ci ratio: 1.321349e-01	ci left: 2.661392e-02	ci right 3.041145e-02	k: 854	n:30000
CCT5   30000 perm   5 sec   (5674 perm/sec)   p_kst 2.846667e-02   p_cons 8.003000e-01   p_joint 4.733333e-02

Joint ci ratio: 1.006645e-01	ci left: 3.468345e-02	ci right 3.838423e-02	k: 1460	n:40000
Cons ci ratio: 9.770226e-03	ci left: 7.970280e-01	ci right 8.048783e-01	k: 32039	n:40000
KS ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
CCT5   40000 perm   7 sec   (5464 perm/sec)   p_kst 2.832500e-02   p_cons 8.009750e-01   p_joint 3.650000e-02

Joint ci ratio: 8.163701e-02	ci left: 4.227764e-02	ci right 4.589553e-02	k: 2203	n:50000
Cons ci ratio: 8.707347e-03	ci left: 7.986004e-01	ci right 8.056045e-01	k: 40106	n:50000
KS ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
CCT5   50000 perm   9 sec   (5324 perm/sec)   p_kst 2.794000e-02   p_cons 8.021200e-01   p_joint 4.406000e-02

Joint ci ratio: 8.830312e-02	ci left: 3.039403e-02	ci right 3.321816e-02	k: 1907	n:60000
Cons ci ratio: 7.971284e-03	ci left: 7.980005e-01	ci right 8.044037e-01	k: 48073	n:60000
KS ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
CCT5   60000 perm   12 sec   (5201 perm/sec)   p_kst 2.836667e-02   p_cons 8.012167e-01   p_joint 3.178333e-02

Outputting figure to mutsig2_images.part000000000033/CCT5.5_1670_60000_0.028367_0.80122_0.031783.png
                gene_name: CCT5
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 33 percent done.
CD101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
Cons ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
KS ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
CD101   10000 perm   2 sec   (6094 perm/sec)   p_kst 6.751000e-01   p_cons 2.242000e-01   p_joint 4.705000e-01

Outputting figure to mutsig2_images.part000000000033/CD101.5_3102_10000_0.6751_0.2242_0.4705.png
                gene_name: CD101
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 34 percent done.
CD248
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
Cons ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
CD248   10000 perm   2 sec   (6111 perm/sec)   p_kst 5.577000e-01   p_cons 6.393000e-01   p_joint 7.522000e-01

Outputting figure to mutsig2_images.part000000000033/CD248.5_2278_10000_0.5577_0.6393_0.7522.png
                gene_name: CD248
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 36 percent done.
CD300LB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
KS ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
CD300LB   10000 perm   1 sec   (7611 perm/sec)   p_kst 1.369000e-01   p_cons 6.556000e-01   p_joint 2.639000e-01

Outputting figure to mutsig2_images.part000000000033/CD300LB.5_733_10000_0.1369_0.6556_0.2639.png
                gene_name: CD300LB
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 38 percent done.
CCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
KS ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
CCNT2   10000 perm   2 sec   (6495 perm/sec)   p_kst 7.239000e-01   p_cons 2.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCNT2.4_2229_10000_0.7239_0.2805_1.png
                gene_name: CCNT2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CCPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
Cons ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
KS ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
CCPG1   10000 perm   2 sec   (6437 perm/sec)   p_kst 4.204000e-01   p_cons 1.817000e-01   p_joint 2.468000e-01

Outputting figure to mutsig2_images.part000000000033/CCPG1.4_2302_10000_0.4204_0.1817_0.2468.png
                gene_name: CCPG1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 41 percent done.
CCT6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
Cons ci ratio: 5.316352e-02	ci left: 3.427329e-01	ci right 3.615533e-01	k: 3521	n:10000
KS ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
CCT6A   10000 perm   2 sec   (6483 perm/sec)   p_kst 3.403000e-01   p_cons 3.521000e-01   p_joint 5.948000e-01

Outputting figure to mutsig2_images.part000000000033/CCT6A.4_1652_10000_0.3403_0.3521_0.5948.png
                gene_name: CCT6A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 43 percent done.
CD177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
KS ci ratio: 1.732587e-02	ci left: 8.292056e-01	ci right 8.437978e-01	k: 8366	n:10000
CD177   10000 perm   1 sec   (7235 perm/sec)   p_kst 8.366000e-01   p_cons 9.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD177.4_1350_10000_0.8366_0.9353_1.png
                gene_name: CD177
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CD180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
Cons ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
KS ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
CD180   10000 perm   2 sec   (6564 perm/sec)   p_kst 8.808000e-01   p_cons 2.029000e-01   p_joint 5.532000e-01

Outputting figure to mutsig2_images.part000000000033/CD180.4_1998_10000_0.8808_0.2029_0.5532.png
                gene_name: CD180
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 46 percent done.
CD200R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
CD200R1   10000 perm   1 sec   (7290 perm/sec)   p_kst 2.749000e-01   p_cons 3.174000e-01   p_joint 3.528000e-01

Outputting figure to mutsig2_images.part000000000033/CD200R1.4_1126_10000_0.2749_0.3174_0.3528.png
                gene_name: CD200R1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 48 percent done.
CD200R1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
Cons ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
KS ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
CD200R1L   10000 perm   1 sec   (7084 perm/sec)   p_kst 6.528000e-01   p_cons 2.270000e-02   p_joint 9.670000e-02

Joint ci ratio: 1.152823e-01	ci left: 5.149119e-02	ci right 5.783907e-02	k: 1092	n:20000
Cons ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
KS ci ratio: 2.018951e-02	ci left: 6.467075e-01	ci right 6.599479e-01	k: 13067	n:20000
CD200R1L   20000 perm   3 sec   (6354 perm/sec)   p_kst 6.533500e-01   p_cons 2.340000e-02   p_joint 5.460000e-02

Joint ci ratio: 7.230355e-02	ci left: 8.599784e-02	ci right 9.248197e-02	k: 2676	n:30000
Cons ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
KS ci ratio: 1.652312e-02	ci left: 6.468797e-01	ci right 6.576908e-01	k: 19569	n:30000
CD200R1L   30000 perm   5 sec   (6052 perm/sec)   p_kst 6.523000e-01   p_cons 2.323333e-02   p_joint 8.920000e-02

Joint ci ratio: 6.439938e-02	ci left: 8.203837e-02	ci right 8.752208e-02	k: 3390	n:40000
Cons ci ratio: 1.268280e-01	ci left: 2.184384e-02	ci right 2.482592e-02	k: 932	n:40000
KS ci ratio: 1.432847e-02	ci left: 6.470077e-01	ci right 6.563703e-01	k: 26068	n:40000
CD200R1L   40000 perm   7 sec   (5853 perm/sec)   p_kst 6.517000e-01   p_cons 2.330000e-02   p_joint 8.475000e-02

Joint ci ratio: 6.561819e-02	ci left: 6.442979e-02	ci right 6.882069e-02	k: 3330	n:50000
Cons ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
KS ci ratio: 1.282712e-02	ci left: 6.471042e-01	ci right 6.554783e-01	k: 32565	n:50000
CD200R1L   50000 perm   9 sec   (5700 perm/sec)   p_kst 6.513000e-01   p_cons 2.148000e-02   p_joint 6.660000e-02

Joint ci ratio: 6.139722e-02	ci left: 6.166013e-02	ci right 6.558221e-02	k: 3816	n:60000
Cons ci ratio: 1.087829e-01	ci left: 2.002980e-02	ci right 2.235017e-02	k: 1270	n:60000
KS ci ratio: 1.183699e-02	ci left: 6.425258e-01	ci right 6.501933e-01	k: 38782	n:60000
CD200R1L   60000 perm   11 sec   (5560 perm/sec)   p_kst 6.463667e-01   p_cons 2.116667e-02   p_joint 6.360000e-02

Joint ci ratio: 5.762177e-02	ci left: 6.022457e-02	ci right 6.381184e-02	k: 4340	n:70000
Cons ci ratio: 1.000889e-01	ci left: 2.036857e-02	ci right 2.252850e-02	k: 1500	n:70000
KS ci ratio: 1.095096e-02	ci left: 6.431459e-01	ci right 6.502420e-01	k: 45269	n:70000
CD200R1L   70000 perm   13 sec   (5437 perm/sec)   p_kst 6.467000e-01   p_cons 2.142857e-02   p_joint 6.200000e-02

Joint ci ratio: 5.051141e-02	ci left: 6.824132e-02	ci right 7.178994e-02	k: 5600	n:80000
Cons ci ratio: 9.386057e-02	ci left: 2.033506e-02	ci right 2.234986e-02	k: 1706	n:80000
KS ci ratio: 1.024986e-02	ci left: 6.431006e-01	ci right 6.497388e-01	k: 51714	n:80000
CD200R1L   80000 perm   15 sec   (5320 perm/sec)   p_kst 6.464250e-01   p_cons 2.132500e-02   p_joint 7.000000e-02

Outputting figure to mutsig2_images.part000000000033/CD200R1L.4_840_80000_0.64643_0.021325_0.07.png
                gene_name: CD200R1L
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 49 percent done.
CD207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
Cons ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
KS ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
CD207   10000 perm   1 sec   (7092 perm/sec)   p_kst 6.361000e-01   p_cons 3.264000e-01   p_joint 6.802000e-01

Outputting figure to mutsig2_images.part000000000033/CD207.4_1011_10000_0.6361_0.3264_0.6802.png
                gene_name: CD207
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 51 percent done.
CD2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
Cons ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
KS ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
CD2BP2   10000 perm   1 sec   (7418 perm/sec)   p_kst 1.032000e-01   p_cons 6.103000e-01   p_joint 2.386000e-01

Joint ci ratio: 4.367839e-02	ci left: 2.807867e-01	ci right 2.933753e-01	k: 5741	n:20000
Cons ci ratio: 2.195332e-02	ci left: 6.077134e-01	ci right 6.212533e-01	k: 12290	n:20000
KS ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
CD2BP2   20000 perm   3 sec   (6537 perm/sec)   p_kst 1.032500e-01   p_cons 6.145000e-01   p_joint 2.870500e-01

Outputting figure to mutsig2_images.part000000000033/CD2BP2.4_1050_20000_0.10325_0.6145_0.28705.png
                gene_name: CD2BP2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 52 percent done.
CD300C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
Cons ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
KS ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
CD300C   10000 perm   1 sec   (7187 perm/sec)   p_kst 6.589000e-01   p_cons 3.253000e-01   p_joint 4.017000e-01

Outputting figure to mutsig2_images.part000000000033/CD300C.4_691_10000_0.6589_0.3253_0.4017.png
                gene_name: CD300C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 54 percent done.
CD34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.479096e-02	ci left: 2.073764e-01	ci right 2.235897e-01	k: 2154	n:10000
Cons ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
CD34   10000 perm   1 sec   (7322 perm/sec)   p_kst 6.810000e-02   p_cons 9.430000e-01   p_joint 2.154000e-01

Joint ci ratio: 5.642571e-02	ci left: 1.888857e-01	ci right 1.999033e-01	k: 3887	n:20000
Cons ci ratio: 7.334471e-03	ci left: 9.310850e-01	ci right 9.379880e-01	k: 18692	n:20000
KS ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
CD34   20000 perm   3 sec   (6435 perm/sec)   p_kst 7.280000e-02   p_cons 9.346000e-01   p_joint 1.943500e-01

Outputting figure to mutsig2_images.part000000000033/CD34.4_1209_20000_0.0728_0.9346_0.19435.png
                gene_name: CD34
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
CD36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
CD36   10000 perm   1 sec   (7164 perm/sec)   p_kst 3.590000e-01   p_cons 1.196000e-01   p_joint 4.614000e-01

Joint ci ratio: 4.281417e-02	ci left: 2.889829e-01	ci right 3.016766e-01	k: 5906	n:20000
Cons ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
KS ci ratio: 3.591868e-02	ci left: 3.664908e-01	ci right 3.799460e-01	k: 7464	n:20000
CD36   20000 perm   3 sec   (6332 perm/sec)   p_kst 3.732000e-01   p_cons 1.172500e-01   p_joint 2.953000e-01

Outputting figure to mutsig2_images.part000000000033/CD36.4_1467_20000_0.3732_0.11725_0.2953.png
                gene_name: CD36
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 57 percent done.
CCT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
KS ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
CCT2   10000 perm   1 sec   (6913 perm/sec)   p_kst 8.011000e-01   p_cons 3.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT2.3_1672_10000_0.8011_0.3827_1.png
                gene_name: CCT2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
CCT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CCT3   10000 perm   1 sec   (7104 perm/sec)   p_kst 1   p_cons 7.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT3.3_1694_10000_1_0.7591_1.png
                gene_name: CCT3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
CD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
CD2   10000 perm   1 sec   (7466 perm/sec)   p_kst 6.777000e-01   p_cons 3.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD2.3_1076_10000_0.6777_0.3479_1.png
                gene_name: CD2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CD209
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
CD209   10000 perm   1 sec   (7094 perm/sec)   p_kst 2.037000e-01   p_cons 3.192000e-01   p_joint 2.060000e-01

Outputting figure to mutsig2_images.part000000000033/CD209.3_1243_10000_0.2037_0.3192_0.206.png
                gene_name: CD209
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
CD274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
CD274   10000 perm   1 sec   (7332 perm/sec)   p_kst 7.821000e-01   p_cons 9.802000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD274.3_897_10000_0.7821_0.9802_1.png
                gene_name: CD274
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CD2AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
CD2AP   10000 perm   1 sec   (6928 perm/sec)   p_kst 1.406000e-01   p_cons 2.450000e-02   p_joint 3.540000e-02

Joint ci ratio: 1.364125e-01	ci left: 3.693936e-02	ci right 4.239551e-02	k: 792	n:20000
Cons ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
KS ci ratio: 6.897111e-02	ci left: 1.342332e-01	ci right 1.438720e-01	k: 2780	n:20000
CD2AP   20000 perm   3 sec   (6167 perm/sec)   p_kst 1.390000e-01   p_cons 2.580000e-02   p_joint 3.960000e-02

Joint ci ratio: 1.503145e-01	ci left: 2.049831e-02	ci right 2.386178e-02	k: 664	n:30000
Cons ci ratio: 1.387939e-01	ci left: 2.409978e-02	ci right 2.772616e-02	k: 776	n:30000
KS ci ratio: 5.653952e-02	ci left: 1.341815e-01	ci right 1.420220e-01	k: 4142	n:30000
CD2AP   30000 perm   5 sec   (5875 perm/sec)   p_kst 1.380667e-01   p_cons 2.586667e-02   p_joint 2.213333e-02

Joint ci ratio: 1.697905e-01	ci left: 1.203263e-02	ci right 1.428886e-02	k: 525	n:40000
Cons ci ratio: 1.182796e-01	ci left: 2.514215e-02	ci right 2.832706e-02	k: 1068	n:40000
KS ci ratio: 4.881623e-02	ci left: 1.354256e-01	ci right 1.422269e-01	k: 5552	n:40000
CD2AP   40000 perm   7 sec   (5688 perm/sec)   p_kst 1.388000e-01   p_cons 2.670000e-02   p_joint 1.312500e-02

Joint ci ratio: 1.069601e-01	ci left: 2.475906e-02	ci right 2.757632e-02	k: 1307	n:50000
Cons ci ratio: 1.056001e-01	ci left: 2.540195e-02	ci right 2.825334e-02	k: 1340	n:50000
KS ci ratio: 4.343132e-02	ci left: 1.370488e-01	ci right 1.431530e-01	k: 7004	n:50000
CD2AP   50000 perm   9 sec   (5535 perm/sec)   p_kst 1.400800e-01   p_cons 2.680000e-02   p_joint 2.614000e-02

Joint ci ratio: 9.454990e-02	ci left: 2.653167e-02	ci right 2.918093e-02	k: 1670	n:60000
Cons ci ratio: 9.696429e-02	ci left: 2.522943e-02	ci right 2.781664e-02	k: 1590	n:60000
KS ci ratio: 3.894157e-02	ci left: 1.416625e-01	ci right 1.473052e-01	k: 8668	n:60000
CD2AP   60000 perm   11 sec   (5401 perm/sec)   p_kst 1.444667e-01   p_cons 2.650000e-02   p_joint 2.783333e-02

Outputting figure to mutsig2_images.part000000000033/CD2AP.3_1992_60000_0.14447_0.0265_0.027833.png
                gene_name: CD2AP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 67 percent done.
CD300A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
Cons ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
CD300A   10000 perm   1 sec   (7286 perm/sec)   p_kst 2.724000e-01   p_cons 4.253000e-01   p_joint 3.778000e-01

Outputting figure to mutsig2_images.part000000000033/CD300A.3_928_10000_0.2724_0.4253_0.3778.png
                gene_name: CD300A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 69 percent done.
CD38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
Cons ci ratio: 2.165997e-02	ci left: 7.576765e-01	ci right 7.743683e-01	k: 7661	n:10000
KS ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
CD38   10000 perm   1 sec   (7220 perm/sec)   p_kst 4.762000e-01   p_cons 7.661000e-01   p_joint 6.563000e-01

Outputting figure to mutsig2_images.part000000000033/CD38.3_935_10000_0.4762_0.7661_0.6563.png
                gene_name: CD38
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 70 percent done.
CD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
KS ci ratio: 2.911732e-02	ci left: 6.349268e-01	ci right 6.537891e-01	k: 6444	n:10000
CD4   10000 perm   1 sec   (6981 perm/sec)   p_kst 6.444000e-01   p_cons 3.486000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000033/CD4.3_1413_10000_0.6444_0.3486_0.9884.png
                gene_name: CD4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 72 percent done.
CCNJL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
KS ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
CCNJL   10000 perm   1 sec   (7398 perm/sec)   p_kst 4.860000e-02   p_cons 4.362000e-01   p_joint 4.060000e-02

Joint ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
Cons ci ratio: 3.135067e-02	ci left: 4.318071e-01	ci right 4.456107e-01	k: 8774	n:20000
KS ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
CCNJL   20000 perm   3 sec   (6551 perm/sec)   p_kst 5.205000e-02   p_cons 4.387000e-01   p_joint 6.880000e-02

Joint ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
Cons ci ratio: 2.549305e-02	ci left: 4.351046e-01	ci right 4.463736e-01	k: 13222	n:30000
KS ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
CCNJL   30000 perm   5 sec   (6207 perm/sec)   p_kst 5.136667e-02   p_cons 4.407333e-01   p_joint 6.626667e-02

Outputting figure to mutsig2_images.part000000000033/CCNJL.2_1332_30000_0.051367_0.44073_0.066267.png
                gene_name: CCNJL
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.069 

Current progress: 74 percent done.
CCNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
Cons ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
KS ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
CCNL1   10000 perm   1 sec   (7334 perm/sec)   p_kst 2.493000e-01   p_cons 2.459000e-01   p_joint 7.482000e-01

Outputting figure to mutsig2_images.part000000000033/CCNL1.2_1625_10000_0.2493_0.2459_0.7482.png
                gene_name: CCNL1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 75 percent done.
CCNO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
Cons ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
CCNO   10000 perm   1 sec   (7500 perm/sec)   p_kst 1.904000e-01   p_cons 7.340000e-01   p_joint 3.541000e-01

Outputting figure to mutsig2_images.part000000000033/CCNO.2_1065_10000_0.1904_0.734_0.3541.png
                gene_name: CCNO
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 77 percent done.
CCNY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
Cons ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
KS ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
CCNY   10000 perm   1 sec   (7990 perm/sec)   p_kst 4.870000e-02   p_cons 5.153000e-01   p_joint 4.870000e-02

Joint ci ratio: 2.866674e-02	ci left: 4.762023e-01	ci right 4.901026e-01	k: 9663	n:20000
Cons ci ratio: 2.680850e-02	ci left: 5.096973e-01	ci right 5.235978e-01	k: 10333	n:20000
KS ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
CCNY   20000 perm   3 sec   (6985 perm/sec)   p_kst 4.980000e-02   p_cons 5.166500e-01   p_joint 4.831500e-01

Joint ci ratio: 7.674823e-02	ci left: 7.692145e-02	ci right 8.309351e-02	k: 2399	n:30000
Cons ci ratio: 2.229406e-02	ci left: 5.018255e-01	ci right 5.131730e-01	k: 15225	n:30000
KS ci ratio: 9.892770e-02	ci left: 4.726782e-02	ci right 5.221984e-02	k: 1491	n:30000
CCNY   30000 perm   5 sec   (6574 perm/sec)   p_kst 4.970000e-02   p_cons 5.075000e-01   p_joint 7.996667e-02

Outputting figure to mutsig2_images.part000000000033/CCNY.2_1066_30000_0.0497_0.5075_0.079967.png
                gene_name: CCNY
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 79 percent done.
CCNYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 2.871829e-02	ci left: 6.412631e-01	ci right 6.600491e-01	k: 6507	n:10000
CCNYL1   10000 perm   1 sec   (7585 perm/sec)   p_kst 6.507000e-01   p_cons 3.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCNYL1.2_1120_10000_0.6507_0.3051_1.png
                gene_name: CCNYL1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.363186e-02	ci left: 2.662650e-01	ci right 2.838662e-01	k: 2750	n:10000
Cons ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
KS ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
CCR1   10000 perm   1 sec   (7706 perm/sec)   p_kst 5.980000e-02   p_cons 5.140000e-01   p_joint 2.750000e-01

Joint ci ratio: 3.744439e-02	ci left: 3.473193e-01	ci right 3.606232e-01	k: 7079	n:20000
Cons ci ratio: 2.807916e-02	ci left: 4.865474e-01	ci right 5.004545e-01	k: 9870	n:20000
KS ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
CCR1   20000 perm   3 sec   (6789 perm/sec)   p_kst 5.890000e-02   p_cons 4.935000e-01   p_joint 3.539500e-01

Joint ci ratio: 3.135068e-02	ci left: 3.371953e-01	ci right 3.479685e-01	k: 10277	n:30000
Cons ci ratio: 2.212227e-02	ci left: 5.056927e-01	ci right 5.170385e-01	k: 15341	n:30000
KS ci ratio: 8.995198e-02	ci left: 5.684923e-02	ci right 6.223646e-02	k: 1785	n:30000
CCR1   30000 perm   5 sec   (6422 perm/sec)   p_kst 5.950000e-02   p_cons 5.113667e-01   p_joint 3.425667e-01

Outputting figure to mutsig2_images.part000000000033/CCR1.2_1072_30000_0.0595_0.51137_0.34257.png
                gene_name: CCR1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 82 percent done.
CCR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
Cons ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
KS ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
CCR3   10000 perm   1 sec   (7590 perm/sec)   p_kst 2.307000e-01   p_cons 7.045000e-01   p_joint 5.181000e-01

Outputting figure to mutsig2_images.part000000000033/CCR3.2_1139_10000_0.2307_0.7045_0.5181.png
                gene_name: CCR3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 84 percent done.
CCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
CCR4   10000 perm   1 sec   (7690 perm/sec)   p_kst 2.221000e-01   p_cons 7.040000e-02   p_joint 2.505000e-01

Joint ci ratio: 6.061364e-02	ci left: 1.676819e-01	ci right 1.782134e-01	k: 3458	n:20000
Cons ci ratio: 9.899308e-02	ci left: 6.909005e-02	ci right 7.633477e-02	k: 1453	n:20000
KS ci ratio: 5.211589e-02	ci left: 2.147207e-01	ci right 2.262607e-01	k: 4409	n:20000
CCR4   20000 perm   3 sec   (6761 perm/sec)   p_kst 2.204500e-01   p_cons 7.265000e-02   p_joint 1.729000e-01

Outputting figure to mutsig2_images.part000000000033/CCR4.2_1087_20000_0.22045_0.07265_0.1729.png
                gene_name: CCR4
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 85 percent done.
CCR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
CCR6   10000 perm   1 sec   (7899 perm/sec)   p_kst 6.598000e-01   p_cons 1.573000e-01   p_joint 2.275000e-01

Outputting figure to mutsig2_images.part000000000033/CCR6.2_1133_10000_0.6598_0.1573_0.2275.png
                gene_name: CCR6
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
CCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
KS ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
CCRL1   10000 perm   1 sec   (7594 perm/sec)   p_kst 5.589000e-01   p_cons 3.650000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000033/CCRL1.2_1057_10000_0.5589_0.365_0.6022.png
                gene_name: CCRL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 89 percent done.
CCRL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
Cons ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
KS ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
CCRL2   10000 perm   1 sec   (7786 perm/sec)   p_kst 4.502000e-01   p_cons 6.183000e-01   p_joint 7.303000e-01

Outputting figure to mutsig2_images.part000000000033/CCRL2.2_1079_10000_0.4502_0.6183_0.7303.png
                gene_name: CCRL2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 90 percent done.
CCT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
Cons ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
CCT7   10000 perm   1 sec   (7225 perm/sec)   p_kst 7.563000e-01   p_cons 1.810000e-01   p_joint 3.768000e-01

Outputting figure to mutsig2_images.part000000000033/CCT7.2_1680_10000_0.7563_0.181_0.3768.png
                gene_name: CCT7
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 92 percent done.
CD19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
KS ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
CD19   10000 perm   1 sec   (7148 perm/sec)   p_kst 8.229000e-01   p_cons 8.017000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD19.2_1730_10000_0.8229_0.8017_1.png
                gene_name: CD19
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
CD200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
KS ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
CD200   10000 perm   1 sec   (7742 perm/sec)   p_kst 9.926000e-01   p_cons 8.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD200.2_913_10000_0.9926_0.845_1.png
                gene_name: CD200
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CD3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
Cons ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
CD3D   10000 perm   1 sec   (7988 perm/sec)   p_kst 3.801000e-01   p_cons 2.200000e-03   p_joint 2.400000e-03

Joint ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
Cons ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
KS ci ratio: 3.526372e-02	ci left: 3.751093e-01	ci right 3.886251e-01	k: 7637	n:20000
CD3D   20000 perm   3 sec   (7001 perm/sec)   p_kst 3.818500e-01   p_cons 2.950000e-03   p_joint 4.450000e-03

Joint ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
Cons ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
KS ci ratio: 2.874798e-02	ci left: 3.770952e-01	ci right 3.881276e-01	k: 11478	n:30000
CD3D   30000 perm   5 sec   (6578 perm/sec)   p_kst 3.826000e-01   p_cons 3.100000e-03   p_joint 4.566667e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
KS ci ratio: 2.494175e-02	ci left: 3.769853e-01	ci right 3.865319e-01	k: 15270	n:40000
CD3D   40000 perm   6 sec   (6326 perm/sec)   p_kst 3.817500e-01   p_cons 3.250000e-03   p_joint 3.250000e-03

Joint ci ratio: 3.103785e-01	ci left: 2.687090e-03	ci right 3.691962e-03	k: 158	n:50000
Cons ci ratio: 3.103785e-01	ci left: 2.687090e-03	ci right 3.691962e-03	k: 158	n:50000
KS ci ratio: 2.227057e-02	ci left: 3.782969e-01	ci right 3.868367e-01	k: 19128	n:50000
CD3D   50000 perm   8 sec   (6133 perm/sec)   p_kst 3.825600e-01   p_cons 3.160000e-03   p_joint 3.160000e-03

Joint ci ratio: 2.824463e-01	ci left: 2.748442e-03	ci right 3.667318e-03	k: 191	n:60000
Cons ci ratio: 2.824463e-01	ci left: 2.748442e-03	ci right 3.667318e-03	k: 191	n:60000
KS ci ratio: 2.038390e-02	ci left: 3.774277e-01	ci right 3.852171e-01	k: 22879	n:60000
CD3D   60000 perm   10 sec   (5968 perm/sec)   p_kst 3.813167e-01   p_cons 3.183333e-03   p_joint 3.183333e-03

Joint ci ratio: 1.897933e-01	ci left: 5.482145e-03	ci right 6.645086e-03	k: 423	n:70000
Cons ci ratio: 2.563782e-01	ci left: 2.902077e-03	ci right 3.768473e-03	k: 232	n:70000
KS ci ratio: 1.885716e-02	ci left: 3.780847e-01	ci right 3.852965e-01	k: 26718	n:70000
CD3D   70000 perm   12 sec   (5823 perm/sec)   p_kst 3.816857e-01   p_cons 3.314286e-03   p_joint 6.042857e-03

Joint ci ratio: 2.338530e-01	ci left: 3.090837e-03	ci right 3.920812e-03	k: 279	n:80000
Cons ci ratio: 2.338530e-01	ci left: 3.090837e-03	ci right 3.920812e-03	k: 279	n:80000
KS ci ratio: 1.761266e-02	ci left: 3.790305e-01	ci right 3.857780e-01	k: 30592	n:80000
CD3D   80000 perm   14 sec   (5687 perm/sec)   p_kst 3.824000e-01   p_cons 3.487500e-03   p_joint 3.487500e-03

Joint ci ratio: 2.627670e-01	ci left: 2.142784e-03	ci right 2.801050e-03	k: 221	n:90000
Cons ci ratio: 2.237090e-01	ci left: 3.019736e-03	ci right 3.790597e-03	k: 305	n:90000
KS ci ratio: 1.661949e-02	ci left: 3.788240e-01	ci right 3.851837e-01	k: 34380	n:90000
CD3D   90000 perm   16 sec   (5569 perm/sec)   p_kst 3.820000e-01   p_cons 3.388889e-03   p_joint 2.455556e-03

Joint ci ratio: 2.128582e-01	ci left: 3.020276e-03	ci right 3.748999e-03	k: 337	n:100000
Cons ci ratio: 2.128582e-01	ci left: 3.020276e-03	ci right 3.748999e-03	k: 337	n:100000
KS ci ratio: 1.575499e-02	ci left: 3.793365e-01	ci right 3.853703e-01	k: 38235	n:100000
CD3D   100000 perm   18 sec   (5453 perm/sec)   p_kst 3.823500e-01   p_cons 3.370000e-03   p_joint 3.370000e-03

Joint ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
Cons ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
KS ci ratio: 1.503585e-02	ci left: 3.790365e-01	ci right 3.847879e-01	k: 42010	n:110000
CD3D   110000 perm   21 sec   (5343 perm/sec)   p_kst 3.819091e-01   p_cons 3.318182e-03   p_joint 3.318182e-03

Joint ci ratio: 1.959181e-01	ci left: 2.999252e-03	ci right 3.658445e-03	k: 398	n:120000
Cons ci ratio: 1.959181e-01	ci left: 2.999252e-03	ci right 3.658445e-03	k: 398	n:120000
KS ci ratio: 1.441613e-02	ci left: 3.784924e-01	ci right 3.839967e-01	k: 45749	n:120000
CD3D   120000 perm   23 sec   (5229 perm/sec)   p_kst 3.812417e-01   p_cons 3.316667e-03   p_joint 3.316667e-03

Joint ci ratio: 1.893896e-01	ci left: 2.973534e-03	ci right 3.602791e-03	k: 426	n:130000
Cons ci ratio: 1.893896e-01	ci left: 2.973534e-03	ci right 3.602791e-03	k: 426	n:130000
KS ci ratio: 1.386650e-02	ci left: 3.780594e-01	ci right 3.833460e-01	k: 49491	n:130000
CD3D   130000 perm   25 sec   (5133 perm/sec)   p_kst 3.807000e-01   p_cons 3.276923e-03   p_joint 3.276923e-03

Joint ci ratio: 1.814829e-01	ci left: 3.019978e-03	ci right 3.629451e-03	k: 464	n:140000
Cons ci ratio: 1.814829e-01	ci left: 3.019978e-03	ci right 3.629451e-03	k: 464	n:140000
KS ci ratio: 1.334431e-02	ci left: 3.787832e-01	ci right 3.838789e-01	k: 53386	n:140000
CD3D   140000 perm   28 sec   (5042 perm/sec)   p_kst 3.813286e-01   p_cons 3.314286e-03   p_joint 3.314286e-03

Joint ci ratio: 1.741432e-01	ci left: 3.073455e-03	ci right 3.665998e-03	k: 504	n:150000
Cons ci ratio: 1.741432e-01	ci left: 3.073455e-03	ci right 3.665998e-03	k: 504	n:150000
KS ci ratio: 1.288443e-02	ci left: 3.791406e-01	ci right 3.840639e-01	k: 57240	n:150000
CD3D   150000 perm   30 sec   (4954 perm/sec)   p_kst 3.816000e-01   p_cons 3.360000e-03   p_joint 3.360000e-03

Joint ci ratio: 1.688759e-01	ci left: 3.072780e-03	ci right 3.645450e-03	k: 536	n:160000
Cons ci ratio: 1.688759e-01	ci left: 3.072780e-03	ci right 3.645450e-03	k: 536	n:160000
KS ci ratio: 1.247465e-02	ci left: 3.792437e-01	ci right 3.840106e-01	k: 61060	n:160000
CD3D   160000 perm   33 sec   (4870 perm/sec)   p_kst 3.816250e-01   p_cons 3.350000e-03   p_joint 3.350000e-03

Joint ci ratio: 1.639148e-01	ci left: 3.078064e-03	ci right 3.633204e-03	k: 569	n:170000
Cons ci ratio: 1.639148e-01	ci left: 3.078064e-03	ci right 3.633204e-03	k: 569	n:170000
KS ci ratio: 1.210193e-02	ci left: 3.793251e-01	ci right 3.839495e-01	k: 64878	n:170000
CD3D   170000 perm   36 sec   (4786 perm/sec)   p_kst 3.816353e-01   p_cons 3.347059e-03   p_joint 3.347059e-03

Joint ci ratio: 1.879385e-01	ci left: 2.184519e-03	ci right 2.642853e-03	k: 433	n:180000
Cons ci ratio: 1.588390e-01	ci left: 3.104319e-03	ci right 3.645204e-03	k: 606	n:180000
KS ci ratio: 1.176503e-02	ci left: 3.792274e-01	ci right 3.837209e-01	k: 68665	n:180000
CD3D   180000 perm   38 sec   (4703 perm/sec)   p_kst 3.814722e-01   p_cons 3.366667e-03   p_joint 2.405556e-03

Joint ci ratio: 1.548114e-01	ci left: 3.102745e-03	ci right 3.628377e-03	k: 638	n:190000
Cons ci ratio: 1.548114e-01	ci left: 3.102745e-03	ci right 3.628377e-03	k: 638	n:190000
KS ci ratio: 1.145019e-02	ci left: 3.793308e-01	ci right 3.837044e-01	k: 72488	n:190000
CD3D   190000 perm   41 sec   (4614 perm/sec)   p_kst 3.815158e-01   p_cons 3.357895e-03   p_joint 3.357895e-03

Joint ci ratio: 1.509626e-01	ci left: 3.106297e-03	ci right 3.618265e-03	k: 671	n:200000
Cons ci ratio: 1.509626e-01	ci left: 3.106297e-03	ci right 3.618265e-03	k: 671	n:200000
KS ci ratio: 1.117769e-02	ci left: 3.786511e-01	ci right 3.829123e-01	k: 76156	n:200000
CD3D   200000 perm   44 sec   (4537 perm/sec)   p_kst 3.807800e-01   p_cons 3.355000e-03   p_joint 3.355000e-03

Joint ci ratio: 1.460424e-01	ci left: 3.169295e-03	ci right 3.673137e-03	k: 717	n:210000
Cons ci ratio: 1.460424e-01	ci left: 3.169295e-03	ci right 3.673137e-03	k: 717	n:210000
KS ci ratio: 1.089806e-02	ci left: 3.791458e-01	ci right 3.833051e-01	k: 80057	n:210000
CD3D   210000 perm   47 sec   (4468 perm/sec)   p_kst 3.812238e-01   p_cons 3.414286e-03   p_joint 3.414286e-03

Joint ci ratio: 1.419472e-01	ci left: 3.209273e-03	ci right 3.703953e-03	k: 759	n:220000
Cons ci ratio: 1.419472e-01	ci left: 3.209273e-03	ci right 3.703953e-03	k: 759	n:220000
KS ci ratio: 1.064773e-02	ci left: 3.791834e-01	ci right 3.832470e-01	k: 83867	n:220000
CD3D   220000 perm   50 sec   (4399 perm/sec)   p_kst 3.812136e-01   p_cons 3.450000e-03   p_joint 3.450000e-03

Joint ci ratio: 1.386998e-01	ci left: 3.220767e-03	ci right 3.704923e-03	k: 795	n:230000
Cons ci ratio: 1.386998e-01	ci left: 3.220767e-03	ci right 3.704923e-03	k: 795	n:230000
KS ci ratio: 1.041140e-02	ci left: 3.793317e-01	ci right 3.833061e-01	k: 87703	n:230000
CD3D   230000 perm   53 sec   (4334 perm/sec)   p_kst 3.813174e-01   p_cons 3.456522e-03   p_joint 3.456522e-03

Joint ci ratio: 1.362418e-01	ci left: 3.203244e-03	ci right 3.675540e-03	k: 824	n:240000
Cons ci ratio: 1.362418e-01	ci left: 3.203244e-03	ci right 3.675540e-03	k: 824	n:240000
KS ci ratio: 1.019509e-02	ci left: 3.792396e-01	ci right 3.831299e-01	k: 91484	n:240000
CD3D   240000 perm   56 sec   (4269 perm/sec)   p_kst 3.811833e-01   p_cons 3.433333e-03   p_joint 3.433333e-03

Joint ci ratio: 1.340677e-01	ci left: 3.179460e-03	ci right 3.640172e-03	k: 851	n:250000
Cons ci ratio: 1.340677e-01	ci left: 3.179460e-03	ci right 3.640172e-03	k: 851	n:250000
KS ci ratio: 9.985959e-03	ci left: 3.794274e-01	ci right 3.832393e-01	k: 95333	n:250000
CD3D   250000 perm   59 sec   (4208 perm/sec)   p_kst 3.813320e-01   p_cons 3.404000e-03   p_joint 3.404000e-03

Joint ci ratio: 1.308052e-01	ci left: 3.217082e-03	ci right 3.671021e-03	k: 894	n:260000
Cons ci ratio: 1.308052e-01	ci left: 3.217082e-03	ci right 3.671021e-03	k: 894	n:260000
KS ci ratio: 9.799415e-03	ci left: 3.791097e-01	ci right 3.828468e-01	k: 99054	n:260000
CD3D   260000 perm   63 sec   (4148 perm/sec)   p_kst 3.809769e-01   p_cons 3.438462e-03   p_joint 3.438462e-03

Joint ci ratio: 1.281818e-01	ci left: 3.230531e-03	ci right 3.676529e-03	k: 931	n:270000
Cons ci ratio: 1.281818e-01	ci left: 3.230531e-03	ci right 3.676529e-03	k: 931	n:270000
KS ci ratio: 9.608972e-03	ci left: 3.795007e-01	ci right 3.831685e-01	k: 102960	n:270000
CD3D   270000 perm   66 sec   (4089 perm/sec)   p_kst 3.813333e-01   p_cons 3.448148e-03   p_joint 3.448148e-03

Joint ci ratio: 1.259714e-01	ci left: 3.229265e-03	ci right 3.666827e-03	k: 964	n:280000
Cons ci ratio: 1.259714e-01	ci left: 3.229265e-03	ci right 3.666827e-03	k: 964	n:280000
KS ci ratio: 9.432137e-03	ci left: 3.797181e-01	ci right 3.833201e-01	k: 106825	n:280000
CD3D   280000 perm   69 sec   (4031 perm/sec)   p_kst 3.815179e-01   p_cons 3.442857e-03   p_joint 3.442857e-03

Joint ci ratio: 1.239338e-01	ci left: 3.224806e-03	ci right 3.654177e-03	k: 996	n:290000
Cons ci ratio: 1.239338e-01	ci left: 3.224806e-03	ci right 3.654177e-03	k: 996	n:290000
KS ci ratio: 9.264920e-03	ci left: 3.799107e-01	ci right 3.834503e-01	k: 110687	n:290000
CD3D   290000 perm   73 sec   (3975 perm/sec)   p_kst 3.816793e-01   p_cons 3.434483e-03   p_joint 3.434483e-03

Joint ci ratio: 1.225309e-01	ci left: 3.191612e-03	ci right 3.611404e-03	k: 1019	n:300000
Cons ci ratio: 1.225309e-01	ci left: 3.191612e-03	ci right 3.611404e-03	k: 1019	n:300000
KS ci ratio: 9.110085e-03	ci left: 3.798945e-01	ci right 3.833745e-01	k: 114490	n:300000
CD3D   300000 perm   77 sec   (3918 perm/sec)   p_kst 3.816333e-01   p_cons 3.396667e-03   p_joint 3.396667e-03

Joint ci ratio: 1.205384e-01	ci left: 3.195001e-03	ci right 3.607917e-03	k: 1053	n:310000
Cons ci ratio: 1.205384e-01	ci left: 3.195001e-03	ci right 3.607917e-03	k: 1053	n:310000
KS ci ratio: 8.957986e-03	ci left: 3.801312e-01	ci right 3.835549e-01	k: 118371	n:310000
CD3D   310000 perm   80 sec   (3862 perm/sec)   p_kst 3.818419e-01   p_cons 3.396774e-03   p_joint 3.396774e-03

Joint ci ratio: 1.182589e-01	ci left: 3.219458e-03	ci right 3.627117e-03	k: 1094	n:320000
Cons ci ratio: 1.182589e-01	ci left: 3.219458e-03	ci right 3.627117e-03	k: 1094	n:320000
KS ci ratio: 8.820844e-03	ci left: 3.799476e-01	ci right 3.833170e-01	k: 122122	n:320000
CD3D   320000 perm   84 sec   (3809 perm/sec)   p_kst 3.816312e-01   p_cons 3.418750e-03   p_joint 3.418750e-03

Joint ci ratio: 1.165683e-01	ci left: 3.216020e-03	ci right 3.617021e-03	k: 1126	n:330000
Cons ci ratio: 1.165683e-01	ci left: 3.216020e-03	ci right 3.617021e-03	k: 1126	n:330000
KS ci ratio: 8.686130e-03	ci left: 3.799754e-01	ci right 3.832933e-01	k: 125939	n:330000
CD3D   330000 perm   88 sec   (3757 perm/sec)   p_kst 3.816333e-01   p_cons 3.412121e-03   p_joint 3.412121e-03

Joint ci ratio: 1.139657e-01	ci left: 3.269968e-03	ci right 3.667981e-03	k: 1178	n:340000
Cons ci ratio: 1.139657e-01	ci left: 3.269968e-03	ci right 3.667981e-03	k: 1178	n:340000
KS ci ratio: 8.557886e-03	ci left: 3.799755e-01	ci right 3.832442e-01	k: 129747	n:340000
CD3D   340000 perm   92 sec   (3707 perm/sec)   p_kst 3.816088e-01   p_cons 3.464706e-03   p_joint 3.464706e-03

Joint ci ratio: 1.129191e-01	ci left: 3.237611e-03	ci right 3.627825e-03	k: 1200	n:350000
Cons ci ratio: 1.129191e-01	ci left: 3.237611e-03	ci right 3.627825e-03	k: 1200	n:350000
KS ci ratio: 8.433423e-03	ci left: 3.800730e-01	ci right 3.832947e-01	k: 133589	n:350000
CD3D   350000 perm   96 sec   (3658 perm/sec)   p_kst 3.816829e-01   p_cons 3.428571e-03   p_joint 3.428571e-03

Joint ci ratio: 1.113993e-01	ci left: 3.236772e-03	ci right 3.621289e-03	k: 1233	n:360000
Cons ci ratio: 1.113993e-01	ci left: 3.236772e-03	ci right 3.621289e-03	k: 1233	n:360000
KS ci ratio: 8.312084e-03	ci left: 3.802875e-01	ci right 3.834644e-01	k: 137475	n:360000
CD3D   360000 perm   100 sec   (3610 perm/sec)   p_kst 3.818750e-01   p_cons 3.425000e-03   p_joint 3.425000e-03

Joint ci ratio: 1.095925e-01	ci left: 3.257042e-03	ci right 3.637287e-03	k: 1274	n:370000
Cons ci ratio: 1.095925e-01	ci left: 3.257042e-03	ci right 3.637287e-03	k: 1274	n:370000
KS ci ratio: 8.196914e-03	ci left: 3.804286e-01	ci right 3.835624e-01	k: 141338	n:370000
CD3D   370000 perm   104 sec   (3563 perm/sec)   p_kst 3.819946e-01   p_cons 3.443243e-03   p_joint 3.443243e-03

Joint ci ratio: 1.084095e-01	ci left: 3.243004e-03	ci right 3.617262e-03	k: 1302	n:380000
Cons ci ratio: 1.084095e-01	ci left: 3.243004e-03	ci right 3.617262e-03	k: 1302	n:380000
KS ci ratio: 8.088700e-03	ci left: 3.804285e-01	ci right 3.835207e-01	k: 145150	n:380000
CD3D   380000 perm   108 sec   (3518 perm/sec)   p_kst 3.819737e-01   p_cons 3.426316e-03   p_joint 3.426316e-03

Joint ci ratio: 1.067821e-01	ci left: 3.259656e-03	ci right 3.629834e-03	k: 1342	n:390000
Cons ci ratio: 1.067821e-01	ci left: 3.259656e-03	ci right 3.629834e-03	k: 1342	n:390000
KS ci ratio: 7.983318e-03	ci left: 3.805080e-01	ci right 3.835604e-01	k: 148993	n:390000
CD3D   390000 perm   112 sec   (3476 perm/sec)   p_kst 3.820333e-01   p_cons 3.441026e-03   p_joint 3.441026e-03

Joint ci ratio: 1.051877e-01	ci left: 3.277949e-03	ci right 3.644302e-03	k: 1383	n:400000
Cons ci ratio: 1.051877e-01	ci left: 3.277949e-03	ci right 3.644302e-03	k: 1383	n:400000
KS ci ratio: 7.880531e-03	ci left: 3.806688e-01	ci right 3.836829e-01	k: 152870	n:400000
CD3D   400000 perm   116 sec   (3434 perm/sec)   p_kst 3.821750e-01   p_cons 3.457500e-03   p_joint 3.457500e-03

Joint ci ratio: 1.041404e-01	ci left: 3.264503e-03	ci right 3.625498e-03	k: 1411	n:410000
Cons ci ratio: 1.041404e-01	ci left: 3.264503e-03	ci right 3.625498e-03	k: 1411	n:410000
KS ci ratio: 7.783584e-03	ci left: 3.807025e-01	ci right 3.836797e-01	k: 156698	n:410000
CD3D   410000 perm   121 sec   (3394 perm/sec)   p_kst 3.821902e-01   p_cons 3.441463e-03   p_joint 3.441463e-03

Joint ci ratio: 1.026952e-01	ci left: 3.279552e-03	ci right 3.636876e-03	k: 1451	n:420000
Cons ci ratio: 1.026952e-01	ci left: 3.279552e-03	ci right 3.636876e-03	k: 1451	n:420000
KS ci ratio: 7.688733e-03	ci left: 3.808205e-01	ci right 3.837621e-01	k: 160562	n:420000
CD3D   420000 perm   125 sec   (3356 perm/sec)   p_kst 3.822905e-01   p_cons 3.454762e-03   p_joint 3.454762e-03

Joint ci ratio: 1.013768e-01	ci left: 3.289401e-03	ci right 3.642923e-03	k: 1489	n:430000
Cons ci ratio: 1.013768e-01	ci left: 3.289401e-03	ci right 3.642923e-03	k: 1489	n:430000
KS ci ratio: 7.600859e-03	ci left: 3.807101e-01	ci right 3.836171e-01	k: 164330	n:430000
CD3D   430000 perm   130 sec   (3318 perm/sec)   p_kst 3.821628e-01   p_cons 3.462791e-03   p_joint 3.462791e-03

Joint ci ratio: 1.004051e-01	ci left: 3.278887e-03	ci right 3.627702e-03	k: 1518	n:440000
Cons ci ratio: 1.004051e-01	ci left: 3.278887e-03	ci right 3.627702e-03	k: 1518	n:440000
KS ci ratio: 7.513868e-03	ci left: 3.807343e-01	ci right 3.836081e-01	k: 168155	n:440000
CD3D   440000 perm   134 sec   (3280 perm/sec)   p_kst 3.821705e-01   p_cons 3.450000e-03   p_joint 3.450000e-03

Joint ci ratio: 1.179403e-01	ci left: 2.304424e-03	ci right 2.595375e-03	k: 1101	n:450000
Cons ci ratio: 9.933208e-02	ci left: 3.277525e-03	ci right 3.622251e-03	k: 1551	n:450000
KS ci ratio: 7.432070e-03	ci left: 3.806134e-01	ci right 3.834548e-01	k: 171915	n:450000
CD3D   450000 perm   139 sec   (3242 perm/sec)   p_kst 3.820333e-01   p_cons 3.446667e-03   p_joint 2.446667e-03

Joint ci ratio: 9.835503e-02	ci left: 3.271999e-03	ci right 3.612564e-03	k: 1582	n:460000
Cons ci ratio: 9.835503e-02	ci left: 3.271999e-03	ci right 3.612564e-03	k: 1582	n:460000
KS ci ratio: 7.351193e-03	ci left: 3.806064e-01	ci right 3.834168e-01	k: 175725	n:460000
CD3D   460000 perm   144 sec   (3204 perm/sec)   p_kst 3.820109e-01   p_cons 3.439130e-03   p_joint 3.439130e-03

Outputting figure to mutsig2_images.part000000000033/CD3D.2_536_460000_0.38201_0.0034391_0.0034391.png
                gene_name: CD3D
               theta_stop: 0.098 
                    nperm: 460000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0033 
     ci_cons_bounds_right: 0.0036 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0033 
    ci_joint_bounds_right: 0.0036 

Current progress: 97 percent done.
CD3EAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
Cons ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
KS ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
CD3EAP   10000 perm   1 sec   (7361 perm/sec)   p_kst 1.121000e-01   p_cons 4.260000e-02   p_joint 5.090000e-02

Joint ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
Cons ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
KS ci ratio: 7.777433e-02	ci left: 1.082998e-01	ci right 1.171132e-01	k: 2253	n:20000
CD3EAP   20000 perm   3 sec   (6467 perm/sec)   p_kst 1.126500e-01   p_cons 4.280000e-02   p_joint 2.195000e-02

Joint ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
Cons ci ratio: 1.075544e-01	ci left: 4.011513e-02	ci right 4.470736e-02	k: 1271	n:30000
KS ci ratio: 6.263959e-02	ci left: 1.118381e-01	ci right 1.191032e-01	k: 3463	n:30000
CD3EAP   30000 perm   5 sec   (6107 perm/sec)   p_kst 1.154333e-01   p_cons 4.236667e-02   p_joint 2.360000e-02

Joint ci ratio: 1.245242e-01	ci left: 2.266770e-02	ci right 2.570191e-02	k: 966	n:40000
Cons ci ratio: 9.389929e-02	ci left: 3.978626e-02	ci right 4.373062e-02	k: 1669	n:40000
KS ci ratio: 5.425207e-02	ci left: 1.123091e-01	ci right 1.185968e-01	k: 4617	n:40000
CD3EAP   40000 perm   7 sec   (5882 perm/sec)   p_kst 1.154250e-01   p_cons 4.172500e-02   p_joint 2.415000e-02

Joint ci ratio: 7.448940e-02	ci left: 5.052180e-02	ci right 5.445037e-02	k: 2623	n:50000
Cons ci ratio: 9.235181e-02	ci left: 3.317152e-02	ci right 3.640279e-02	k: 1738	n:50000
KS ci ratio: 4.856981e-02	ci left: 1.124536e-01	ci right 1.180712e-01	k: 5762	n:50000
CD3EAP   50000 perm   9 sec   (5712 perm/sec)   p_kst 1.152400e-01   p_cons 3.476000e-02   p_joint 5.246000e-02

Outputting figure to mutsig2_images.part000000000033/CD3EAP.2_1545_50000_0.11524_0.03476_0.05246.png
                gene_name: CD3EAP
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 98 percent done.
CD44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
CD44   10000 perm   1 sec   (6922 perm/sec)   p_kst 3.800000e-02   p_cons 1.292000e-01   p_joint 2.800000e-02

Joint ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
Cons ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
KS ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
CD44   20000 perm   3 sec   (6098 perm/sec)   p_kst 3.980000e-02   p_cons 1.265500e-01   p_joint 3.395000e-02

Joint ci ratio: 7.552359e-02	ci left: 7.927956e-02	ci right 8.553492e-02	k: 2471	n:30000
Cons ci ratio: 5.920358e-02	ci left: 1.237124e-01	ci right 1.312932e-01	k: 3824	n:30000
KS ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
CD44   30000 perm   5 sec   (5782 perm/sec)   p_kst 3.940000e-02   p_cons 1.274667e-01   p_joint 8.236667e-02

Joint ci ratio: 1.136652e-01	ci left: 2.723143e-02	ci right 3.053743e-02	k: 1154	n:40000
Cons ci ratio: 5.081052e-02	ci left: 1.262242e-01	ci right 1.328297e-01	k: 5180	n:40000
KS ci ratio: 9.788187e-02	ci left: 3.665999e-02	ci right 4.045737e-02	k: 1541	n:40000
CD44   40000 perm   7 sec   (5588 perm/sec)   p_kst 3.852500e-02   p_cons 1.295000e-01   p_joint 2.885000e-02

Joint ci ratio: 8.148243e-02	ci left: 4.243452e-02	ci right 4.605863e-02	k: 2211	n:50000
Cons ci ratio: 4.576864e-02	ci left: 1.250041e-01	ci right 1.308792e-01	k: 6396	n:50000
KS ci ratio: 8.732482e-02	ci left: 3.704578e-02	ci right 4.044804e-02	k: 1936	n:50000
CD44   50000 perm   9 sec   (5429 perm/sec)   p_kst 3.872000e-02   p_cons 1.279200e-01   p_joint 4.422000e-02

Outputting figure to mutsig2_images.part000000000033/CD44.2_2301_50000_0.03872_0.12792_0.04422.png
                gene_name: CD44
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000033
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 33 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4421810: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000034> was used as the working directory.
Started at Wed Oct 24 17:35:08 2012
Results reported at Wed Oct 24 20:29:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000034.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000034.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 34  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000034.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10272.57 sec.
    Max Memory :      5393 MB
    Max Swap   :      7793 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
34
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 34
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 34: processing genes 2987 - 3076
Calculating significance of each gene.
Using projection method.
2987	CD48	1.159589e-01
2988	CD5	3.362620e-01
2989	CD52	1
2990	CD53	1.984962e-01
2991	CD55	6.092706e-01
2992	CD58	4.986381e-01
2993	CD59	1
2994	CD5L	1.216365e-08
2995	CD6	8.003536e-01
2996	CD63	5.696947e-01
2997	CD68	1
2998	CD69	3.338325e-01
2999	CD7	1
3000/18094 3000	CD70	1
3001	CD72	1
3002	CD74	1
3003	CD79A	1
3004	CD79B	7.043632e-01
In gene CD80 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 887     n = 1	mu =   9.71e-07
3005	CD80	5.331532e-02
3006	CD81	1
3007	CD82	4.334469e-01
3008	CD83	1
3009	CD84	5.933985e-01
3010	CD86	7.518144e-01
3011	CD8A	3.217109e-01
3012	CD8B	1.743743e-01
3013	CD9	1
3014	CD93	8.192416e-03
3015	CD96	5.729531e-01
3016	CD97	7.481566e-01
3017	CD99	1.239612e-01
3018	CD99L2	1.747338e-02
3019	CDA	1
3020	CDADC1	5.420831e-01
3021	CDAN1	9.963923e-01
3022	CDC123	6.188496e-01
3023	CDC14A	5.216965e-01
3024	CDC14B	8.852718e-01
3025	CDC16	7.162562e-01
3026	CDC20	9.339487e-01
3027	CDC20B	1
3028	CDC23	8.838557e-01
3029	CDC25A	3.402214e-01
3030	CDC25B	1
3031	CDC25C	4.242272e-01
3032	CDC26	1
In gene CDC27 the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 2557    n = 1	mu =   2.01e-07
3033	CDC27	7.097514e-01
3034	CDC34	5.519029e-01
3035	CDC37	1
3036	CDC37L1	4.326216e-01
3037	CDC40	7.644900e-01
3038	CDC42	3.703654e-01
3039	CDC42BPA	9.996015e-01
3040	CDC42BPB	1
3041	CDC42BPG	1
3042	CDC42EP1	1
3043	CDC42EP2	4.572305e-01
3044	CDC42EP3	8.330445e-01
3045	CDC42EP4	8.916190e-01
3046	CDC42SE1	3.170978e-01
3047	CDC42SE2	1
3048	CDC45	9.429946e-01
3049	CDC5L	1
3050	CDC6	9.655051e-01
3051	CDC7	1
3052	CDC73	1.389457e-02
3053	CDCA2	5.899487e-01
3054	CDCA3	6.797374e-01
3055	CDCA4	7.878991e-01
3056	CDCA5	1
3057	CDCA7	3.415577e-01
3058	CDCA7L	4.916985e-01
3059	CDCA8	1
3060	CDCP1	9.955259e-01
3061	CDCP2	7.546236e-01
3062	CDH1	8.736436e-01
3063	CDH10	2.214617e-11
3064	CDH11	1.394929e-03
3065	CDH12	6.104551e-04
3066	CDH13	1
3067	CDH15	5.704183e-01
3068	CDH16	9.071545e-01
3069	CDH17	1.883255e-01
3070	CDH18	7.694812e-04
3071	CDH19	9.652313e-01
3072	CDH2	4.502905e-02
3073	CDH20	9.285325e-01
3074	CDH22	9.671386e-01
3075	CDH23	1
In gene CDH24 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 1873    n = 1	mu =   4.02e-07
    LUAD-17-Z048-TP	categ 6	N = 1873    n = 1	mu =   5.69e-07
3076	CDH24	5.739679e-01
Done

Running MutSig 2:
Scatter job 34: processing genes 2987 - 3076
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
Cons ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
KS ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
CDH10   10000 perm   3 sec   (3971 perm/sec)   p_kst 8.172000e-01   p_cons 4.430000e-01   p_joint 7.739000e-01

Outputting figure to mutsig2_images.part000000000034/CDH10.51_2411_10000_0.8172_0.443_0.7739.png
                gene_name: CDH10
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 2 percent done.
CDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
Cons ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CDH12   10000 perm   2 sec   (4916 perm/sec)   p_kst 1   p_cons 3.787000e-01   p_joint 7.830000e-01

Outputting figure to mutsig2_images.part000000000034/CDH12.31_2429_10000_1_0.3787_0.783.png
                gene_name: CDH12
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 3 percent done.
CDH18
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
KS ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
CDH18   10000 perm   2 sec   (5327 perm/sec)   p_kst 2.376000e-01   p_cons 9.810000e-02   p_joint 1.348000e-01

Joint ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
Cons ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
KS ci ratio: 4.939961e-02	ci left: 2.334993e-01	ci right 2.453765e-01	k: 4788	n:20000
CDH18   20000 perm   4 sec   (4848 perm/sec)   p_kst 2.394000e-01   p_cons 9.820000e-02   p_joint 1.257500e-01

Outputting figure to mutsig2_images.part000000000034/CDH18.29_2417_20000_0.2394_0.0982_0.12575.png
                gene_name: CDH18
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 5 percent done.
CDH23
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
Cons ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
KS ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
CDH23   10000 perm   3 sec   (3550 perm/sec)   p_kst 2.152000e-01   p_cons 2.534000e-01   p_joint 2.490000e-01

Outputting figure to mutsig2_images.part000000000034/CDH23.25_10761_10000_0.2152_0.2534_0.249.png
                gene_name: CDH23
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 7 percent done.
CDH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
Cons ci ratio: 3.337433e-03	ci left: 9.910526e-01	ci right 9.944508e-01	k: 9929	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
CDH11   10000 perm   2 sec   (4760 perm/sec)   p_kst 2.374000e-01   p_cons 9.929000e-01   p_joint 4.097000e-01

Outputting figure to mutsig2_images.part000000000034/CDH11.21_2435_10000_0.2374_0.9929_0.4097.png
                gene_name: CDH11
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 8 percent done.
CDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
Cons ci ratio: 4.487681e-02	ci left: 4.229601e-01	ci right 4.424791e-01	k: 4327	n:10000
KS ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
CDH2   10000 perm   2 sec   (4941 perm/sec)   p_kst 2.279000e-01   p_cons 4.327000e-01   p_joint 2.590000e-01

Outputting figure to mutsig2_images.part000000000034/CDH2.20_2785_10000_0.2279_0.4327_0.259.png
                gene_name: CDH2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 10 percent done.
CD5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
CD5L   10000 perm   2 sec   (5696 perm/sec)   p_kst 2.578000e-01   p_cons 6.780000e-02   p_joint 1.027000e-01

Joint ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
Cons ci ratio: 1.041021e-01	ci left: 6.274367e-02	ci right 6.968309e-02	k: 1323	n:20000
KS ci ratio: 4.702513e-02	ci left: 2.517483e-01	ci right 2.639222e-01	k: 5156	n:20000
CD5L   20000 perm   4 sec   (5141 perm/sec)   p_kst 2.578000e-01   p_cons 6.615000e-02   p_joint 1.025500e-01

Joint ci ratio: 6.452911e-02	ci left: 1.059877e-01	ci right 1.130881e-01	k: 3285	n:30000
Cons ci ratio: 8.474859e-02	ci left: 6.373869e-02	ci right 6.941226e-02	k: 1996	n:30000
KS ci ratio: 3.879289e-02	ci left: 2.489822e-01	ci right 2.588655e-01	k: 7617	n:30000
CD5L   30000 perm   6 sec   (4964 perm/sec)   p_kst 2.539000e-01   p_cons 6.653333e-02   p_joint 1.095000e-01

Outputting figure to mutsig2_images.part000000000034/CD5L.15_1068_30000_0.2539_0.066533_0.1095.png
                gene_name: CD5L
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 12 percent done.
CDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
Cons ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
KS ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
CDH20   10000 perm   2 sec   (5151 perm/sec)   p_kst 9.550000e-02   p_cons 4.026000e-01   p_joint 1.333000e-01

Joint ci ratio: 6.961204e-02	ci left: 1.320656e-01	ci right 1.416403e-01	k: 2736	n:20000
Cons ci ratio: 3.352434e-02	ci left: 3.991831e-01	ci right 4.128442e-01	k: 8120	n:20000
KS ci ratio: 8.666425e-02	ci left: 8.876415e-02	ci right 9.685468e-02	k: 1855	n:20000
CDH20   20000 perm   4 sec   (4738 perm/sec)   p_kst 9.275000e-02   p_cons 4.060000e-01   p_joint 1.368000e-01

Outputting figure to mutsig2_images.part000000000034/CDH20.14_2450_20000_0.09275_0.406_0.1368.png
                gene_name: CDH20
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 13 percent done.
CDC42BPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
Cons ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
CDC42BPA   10000 perm   2 sec   (4645 perm/sec)   p_kst 4.818000e-01   p_cons 5.520000e-02   p_joint 1.684000e-01

Joint ci ratio: 6.514151e-02	ci left: 1.482832e-01	ci right 1.583178e-01	k: 3065	n:20000
Cons ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
KS ci ratio: 2.839549e-02	ci left: 4.809497e-01	ci right 4.948538e-01	k: 9758	n:20000
CDC42BPA   20000 perm   5 sec   (4224 perm/sec)   p_kst 4.879000e-01   p_cons 5.515000e-02   p_joint 1.532500e-01

Joint ci ratio: 4.941911e-02	ci left: 1.690650e-01	ci right 1.776650e-01	k: 5200	n:30000
Cons ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
KS ci ratio: 2.214885e-02	ci left: 5.050926e-01	ci right 5.164387e-01	k: 15323	n:30000
CDC42BPA   30000 perm   7 sec   (4106 perm/sec)   p_kst 5.107667e-01   p_cons 5.480000e-02   p_joint 1.733333e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPA.12_5304_30000_0.51077_0.0548_0.17333.png
                gene_name: CDC42BPA
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
CDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
CDH17   10000 perm   2 sec   (5596 perm/sec)   p_kst 4.050000e-02   p_cons 4.660000e-02   p_joint 1.100000e-02

Joint ci ratio: 1.660773e-01	ci left: 2.484562e-02	ci right 2.939326e-02	k: 541	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
CDH17   20000 perm   4 sec   (5101 perm/sec)   p_kst 4.090000e-02   p_cons 5.025000e-02   p_joint 2.705000e-02

Joint ci ratio: 1.467433e-01	ci left: 2.152616e-02	ci right 2.496703e-02	k: 696	n:30000
Cons ci ratio: 1.026764e-01	ci left: 4.394952e-02	ci right 4.873883e-02	k: 1389	n:30000
KS ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
CDH17   30000 perm   6 sec   (4899 perm/sec)   p_kst 4.116667e-02   p_cons 4.630000e-02   p_joint 2.320000e-02

Joint ci ratio: 1.395299e-01	ci left: 1.799839e-02	ci right 2.072202e-02	k: 773	n:40000
Cons ci ratio: 8.820768e-02	ci left: 4.497090e-02	ci right 4.914517e-02	k: 1881	n:40000
KS ci ratio: 9.431259e-02	ci left: 3.944416e-02	ci right 4.337277e-02	k: 1655	n:40000
CDH17   40000 perm   8 sec   (4758 perm/sec)   p_kst 4.137500e-02   p_cons 4.702500e-02   p_joint 1.932500e-02

Joint ci ratio: 9.156374e-02	ci left: 3.373863e-02	ci right 3.699560e-02	k: 1767	n:50000
Cons ci ratio: 8.320933e-02	ci left: 4.072882e-02	ci right 4.428454e-02	k: 2124	n:50000
KS ci ratio: 8.380836e-02	ci left: 4.016043e-02	ci right 4.369300e-02	k: 2095	n:50000
CDH17   50000 perm   11 sec   (4649 perm/sec)   p_kst 4.190000e-02   p_cons 4.248000e-02   p_joint 3.534000e-02

Outputting figure to mutsig2_images.part000000000034/CDH17.12_2567_50000_0.0419_0.04248_0.03534.png
                gene_name: CDH17
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 17 percent done.
CD93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
CD93   10000 perm   2 sec   (5255 perm/sec)   p_kst 7.794000e-01   p_cons 9.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD93.11_1967_10000_0.7794_0.9134_1.png
                gene_name: CD93
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
CDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
Cons ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
KS ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
CDC73   10000 perm   2 sec   (5836 perm/sec)   p_kst 6.338000e-01   p_cons 1.287000e-01   p_joint 3.444000e-01

Joint ci ratio: 4.739660e-02	ci left: 2.487719e-01	ci right 2.608994e-01	k: 5096	n:20000
Cons ci ratio: 7.282011e-02	ci left: 1.219226e-01	ci right 1.311863e-01	k: 2530	n:20000
KS ci ratio: 2.091448e-02	ci left: 6.304919e-01	ci right 6.438682e-01	k: 12744	n:20000
CDC73   20000 perm   4 sec   (5342 perm/sec)   p_kst 6.372000e-01   p_cons 1.265000e-01   p_joint 2.548000e-01

Outputting figure to mutsig2_images.part000000000034/CDC73.9_1664_20000_0.6372_0.1265_0.2548.png
                gene_name: CDC73
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 20 percent done.
CDH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
Cons ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
CDH13   10000 perm   2 sec   (5819 perm/sec)   p_kst 9.030000e-02   p_cons 4.820000e-02   p_joint 6.260000e-02

Joint ci ratio: 1.048676e-01	ci left: 6.186567e-02	ci right 6.876137e-02	k: 1305	n:20000
Cons ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
KS ci ratio: 8.914826e-02	ci left: 8.420687e-02	ci right 9.211334e-02	k: 1762	n:20000
CDH13   20000 perm   4 sec   (5303 perm/sec)   p_kst 8.810000e-02   p_cons 4.695000e-02   p_joint 6.525000e-02

Joint ci ratio: 9.312609e-02	ci left: 5.316386e-02	ci right 5.838925e-02	k: 1672	n:30000
Cons ci ratio: 1.019858e-01	ci left: 4.453486e-02	ci right 4.935337e-02	k: 1407	n:30000
KS ci ratio: 7.269181e-02	ci left: 8.514544e-02	ci right 9.160121e-02	k: 2650	n:30000
CDH13   30000 perm   6 sec   (5077 perm/sec)   p_kst 8.833333e-02   p_cons 4.690000e-02   p_joint 5.573333e-02

Joint ci ratio: 8.426466e-02	ci left: 4.915821e-02	ci right 5.350722e-02	k: 2052	n:40000
Cons ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
KS ci ratio: 6.319534e-02	ci left: 8.497018e-02	ci right 9.053983e-02	k: 3509	n:40000
CDH13   40000 perm   8 sec   (4940 perm/sec)   p_kst 8.772500e-02   p_cons 4.637500e-02   p_joint 5.130000e-02

Outputting figure to mutsig2_images.part000000000034/CDH13.8_2198_40000_0.087725_0.046375_0.0513.png
                gene_name: CDH13
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 22 percent done.
CDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
Cons ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
KS ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
CDH19   10000 perm   2 sec   (5979 perm/sec)   p_kst 6.858000e-01   p_cons 8.910000e-02   p_joint 2.320000e-01

Joint ci ratio: 4.948112e-02	ci left: 2.329045e-01	ci right 2.447715e-01	k: 4776	n:20000
Cons ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
KS ci ratio: 1.861557e-02	ci left: 6.826833e-01	ci right 6.955617e-01	k: 13783	n:20000
CDH19   20000 perm   4 sec   (5418 perm/sec)   p_kst 6.891500e-01   p_cons 9.615000e-02   p_joint 2.388000e-01

Outputting figure to mutsig2_images.part000000000034/CDH19.8_2363_20000_0.68915_0.09615_0.2388.png
                gene_name: CDH19
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 23 percent done.
CDC14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
KS ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
CDC14A   10000 perm   2 sec   (5449 perm/sec)   p_kst 2.903000e-01   p_cons 3.172000e-01   p_joint 3.516000e-01

Outputting figure to mutsig2_images.part000000000034/CDC14A.7_1981_10000_0.2903_0.3172_0.3516.png
                gene_name: CDC14A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
CD86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
Cons ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
CD86   10000 perm   2 sec   (6061 perm/sec)   p_kst 6.344000e-01   p_cons 6.938000e-01   p_joint 8.760000e-01

Outputting figure to mutsig2_images.part000000000034/CD86.6_1018_10000_0.6344_0.6938_0.876.png
                gene_name: CD86
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 27 percent done.
CDCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
CDCA2   10000 perm   2 sec   (5394 perm/sec)   p_kst 4.421000e-01   p_cons 5.160000e-01   p_joint 6.483000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA2.6_3128_10000_0.4421_0.516_0.6483.png
                gene_name: CDCA2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 28 percent done.
CDCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
Cons ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
KS ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
CDCP1   10000 perm   2 sec   (5848 perm/sec)   p_kst 6.236000e-01   p_cons 6.140000e-02   p_joint 2.623000e-01

Joint ci ratio: 5.476978e-02	ci left: 1.982851e-01	ci right 2.095011e-01	k: 4077	n:20000
Cons ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
KS ci ratio: 2.253439e-02	ci left: 5.952269e-01	ci right 6.088434e-01	k: 12041	n:20000
CDCP1   20000 perm   4 sec   (5304 perm/sec)   p_kst 6.020500e-01   p_cons 6.540000e-02   p_joint 2.038500e-01

Joint ci ratio: 4.326655e-02	ci left: 2.101639e-01	ci right 2.194914e-01	k: 6444	n:30000
Cons ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
KS ci ratio: 1.839510e-02	ci left: 5.966018e-01	ci right 6.077118e-01	k: 18065	n:30000
CDCP1   30000 perm   6 sec   (5072 perm/sec)   p_kst 6.021667e-01   p_cons 6.513333e-02   p_joint 2.148000e-01

Outputting figure to mutsig2_images.part000000000034/CDCP1.6_2555_30000_0.60217_0.065133_0.2148.png
                gene_name: CDCP1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
CDH22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
Cons ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
KS ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
CDH22   10000 perm   2 sec   (5602 perm/sec)   p_kst 5.089000e-01   p_cons 4.506000e-01   p_joint 6.657000e-01

Outputting figure to mutsig2_images.part000000000034/CDH22.6_2531_10000_0.5089_0.4506_0.6657.png
                gene_name: CDH22
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 32 percent done.
CD99L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
Cons ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
KS ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
CD99L2   10000 perm   1 sec   (6932 perm/sec)   p_kst 6.900000e-01   p_cons 3.750000e-01   p_joint 7.866000e-01

Outputting figure to mutsig2_images.part000000000034/CD99L2.5_833_10000_0.69_0.375_0.7866.png
                gene_name: CD99L2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 33 percent done.
CDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
Cons ci ratio: 2.442631e-02	ci left: 7.113894e-01	ci right 7.290822e-01	k: 7203	n:10000
KS ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
CDH1   10000 perm   2 sec   (6090 perm/sec)   p_kst 5.902000e-01   p_cons 7.203000e-01   p_joint 8.152000e-01

Outputting figure to mutsig2_images.part000000000034/CDH1.5_2713_10000_0.5902_0.7203_0.8152.png
                gene_name: CDH1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 35 percent done.
CDH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
CDH15   10000 perm   2 sec   (6114 perm/sec)   p_kst 3.000000e-04   p_cons 7.995000e-01   p_joint 1.630000e-02

Joint ci ratio: 3.136318e-01	ci left: 6.535562e-03	ci right 9.010769e-03	k: 154	n:20000
Cons ci ratio: 1.377506e-02	ci left: 7.963580e-01	ci right 8.074541e-01	k: 16039	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
CDH15   20000 perm   4 sec   (5489 perm/sec)   p_kst 1.500000e-04   p_cons 8.019500e-01   p_joint 7.700000e-03

Joint ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
Cons ci ratio: 1.122184e-02	ci left: 7.981172e-01	ci right 8.071574e-01	k: 24080	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
CDH15   30000 perm   6 sec   (5253 perm/sec)   p_kst 1.000000e-04   p_cons 8.026667e-01   p_joint 5.400000e-03

Joint ci ratio: 3.650115e-01	ci left: 2.351456e-03	ci right 3.422738e-03	k: 114	n:40000
Cons ci ratio: 1.004449e-02	ci left: 7.879889e-01	ci right 7.959687e-01	k: 31680	n:40000
KS ci ratio: 1.385773e+00	ci left: 7.036188e-05	ci right 3.605334e-04	k: 7	n:40000
CDH15   40000 perm   8 sec   (5100 perm/sec)   p_kst 1.750000e-04   p_cons 7.920000e-01   p_joint 2.850000e-03

Joint ci ratio: 3.487776e-01	ci left: 2.081393e-03	ci right 2.977924e-03	k: 125	n:50000
Cons ci ratio: 9.006411e-03	ci left: 7.875904e-01	ci right 7.947358e-01	k: 39559	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
CDH15   50000 perm   10 sec   (4977 perm/sec)   p_kst 1.800000e-04   p_cons 7.911800e-01   p_joint 2.500000e-03

Joint ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
Cons ci ratio: 8.471079e-03	ci left: 7.778030e-01	ci right 7.844365e-01	k: 46868	n:60000
KS ci ratio: 1.131484e+00	ci left: 9.152278e-05	ci right 3.280102e-04	k: 11	n:60000
CDH15   60000 perm   12 sec   (4860 perm/sec)   p_kst 1.833333e-04   p_cons 7.811333e-01   p_joint 1.716667e-03

Joint ci ratio: 4.019076e-01	ci left: 1.085297e-03	ci right 1.643070e-03	k: 94	n:70000
Cons ci ratio: 7.849354e-03	ci left: 7.777596e-01	ci right 7.839028e-01	k: 54659	n:70000
KS ci ratio: 1.012024e+00	ci left: 1.093460e-04	ci right 3.355433e-04	k: 14	n:70000
CDH15   70000 perm   15 sec   (4757 perm/sec)   p_kst 2.000000e-04   p_cons 7.808429e-01   p_joint 1.342857e-03

Joint ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
Cons ci ratio: 7.353773e-03	ci left: 7.774270e-01	ci right 7.831776e-01	k: 62425	n:80000
KS ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
CDH15   80000 perm   17 sec   (4662 perm/sec)   p_kst 2.000000e-04   p_cons 7.803125e-01   p_joint 1.350000e-03

Joint ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
Cons ci ratio: 6.936151e-03	ci left: 7.774465e-01	ci right 7.828688e-01	k: 70215	n:90000
KS ci ratio: 8.992098e-01	ci left: 1.185368e-04	ci right 3.160679e-04	k: 18	n:90000
CDH15   90000 perm   20 sec   (4580 perm/sec)   p_kst 2.000000e-04   p_cons 7.801667e-01   p_joint 1.355556e-03

Joint ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
Cons ci ratio: 6.580146e-03	ci left: 7.775901e-01	ci right 7.827336e-01	k: 78017	n:100000
KS ci ratio: 8.553200e-01	ci left: 1.221693e-04	ci right 3.088670e-04	k: 20	n:100000
CDH15   100000 perm   22 sec   (4497 perm/sec)   p_kst 2.000000e-04   p_cons 7.801700e-01   p_joint 1.220000e-03

Joint ci ratio: 3.346981e-01	ci left: 1.037412e-03	ci right 1.462314e-03	k: 136	n:110000
Cons ci ratio: 6.272874e-03	ci left: 7.777683e-01	ci right 7.826715e-01	k: 85825	n:110000
KS ci ratio: 8.172873e-01	ci left: 1.253430e-04	ci right 3.027868e-04	k: 22	n:110000
CDH15   110000 perm   25 sec   (4425 perm/sec)   p_kst 2.000000e-04   p_cons 7.802273e-01   p_joint 1.236364e-03

Joint ci ratio: 3.397173e-01	ci left: 9.204398e-04	ci right 1.304326e-03	k: 132	n:120000
Cons ci ratio: 6.000897e-03	ci left: 7.781556e-01	ci right 7.828475e-01	k: 93661	n:120000
KS ci ratio: 7.407208e-01	ci left: 1.482815e-04	ci right 3.273464e-04	k: 27	n:120000
CDH15   120000 perm   28 sec   (4356 perm/sec)   p_kst 2.250000e-04   p_cons 7.805083e-01   p_joint 1.100000e-03

Joint ci ratio: 3.299432e-01	ci left: 9.060015e-04	ci right 1.270688e-03	k: 140	n:130000
Cons ci ratio: 5.772604e-03	ci left: 7.778230e-01	ci right 7.823337e-01	k: 101411	n:130000
KS ci ratio: 7.039661e-01	ci left: 1.557043e-04	ci right 3.294212e-04	k: 30	n:130000
CDH15   130000 perm   30 sec   (4289 perm/sec)   p_kst 2.307692e-04   p_cons 7.800846e-01   p_joint 1.076923e-03

Joint ci ratio: 3.220505e-01	ci left: 8.871945e-04	ci right 1.234005e-03	k: 147	n:140000
Cons ci ratio: 5.558318e-03	ci left: 7.781720e-01	ci right 7.825164e-01	k: 109249	n:140000
KS ci ratio: 6.721904e-01	ci left: 1.622602e-04	ci right 3.310147e-04	k: 33	n:140000
CDH15   140000 perm   33 sec   (4224 perm/sec)   p_kst 2.357143e-04   p_cons 7.803500e-01   p_joint 1.050000e-03

Joint ci ratio: 2.117268e-01	ci left: 2.038654e-03	ci right 2.527570e-03	k: 341	n:150000
Cons ci ratio: 5.364884e-03	ci left: 7.785639e-01	ci right 7.827586e-01	k: 117100	n:150000
KS ci ratio: 6.358253e-01	ci left: 1.736819e-04	ci right 3.399816e-04	k: 37	n:150000
CDH15   150000 perm   36 sec   (4162 perm/sec)   p_kst 2.466667e-04   p_cons 7.806667e-01   p_joint 2.273333e-03

Joint ci ratio: 2.406034e-01	ci left: 1.457085e-03	ci right 1.861317e-03	k: 264	n:160000
Cons ci ratio: 4.923925e-03	ci left: 7.964633e-01	ci right 8.004009e-01	k: 127750	n:160000
KS ci ratio: 6.276239e-01	ci left: 1.680744e-04	ci right 3.259729e-04	k: 38	n:160000
CDH15   160000 perm   39 sec   (4101 perm/sec)   p_kst 2.375000e-04   p_cons 7.984375e-01   p_joint 1.650000e-03

Joint ci ratio: 2.383734e-01	ci left: 1.399016e-03	ci right 1.783009e-03	k: 269	n:170000
Cons ci ratio: 4.775894e-03	ci left: 7.965911e-01	ci right 8.004105e-01	k: 135746	n:170000
KS ci ratio: 6.047926e-01	ci left: 1.730778e-04	ci right 3.271690e-04	k: 41	n:170000
CDH15   170000 perm   42 sec   (4042 perm/sec)   p_kst 2.411765e-04   p_cons 7.985059e-01   p_joint 1.582353e-03

Joint ci ratio: 2.472549e-01	ci left: 1.222143e-03	ci right 1.572010e-03	k: 250	n:180000
Cons ci ratio: 4.637893e-03	ci left: 7.968847e-01	ci right 8.005946e-01	k: 143774	n:180000
KS ci ratio: 5.977213e-01	ci left: 1.681712e-04	ci right 3.153859e-04	k: 42	n:180000
CDH15   180000 perm   45 sec   (3983 perm/sec)   p_kst 2.333333e-04   p_cons 7.987444e-01   p_joint 1.388889e-03

Joint ci ratio: 2.467723e-01	ci left: 1.162753e-03	ci right 1.494867e-03	k: 251	n:190000
Cons ci ratio: 4.519250e-03	ci left: 7.965730e-01	ci right 8.001863e-01	k: 151693	n:190000
KS ci ratio: 5.908922e-01	ci left: 1.637905e-04	ci right 3.048339e-04	k: 43	n:190000
CDH15   190000 perm   48 sec   (3927 perm/sec)   p_kst 2.263158e-04   p_cons 7.983842e-01   p_joint 1.321053e-03

Joint ci ratio: 2.438905e-01	ci left: 1.132768e-03	ci right 1.451968e-03	k: 257	n:200000
Cons ci ratio: 4.405083e-03	ci left: 7.965998e-01	ci right 8.001216e-01	k: 159673	n:200000
KS ci ratio: 5.717221e-01	ci left: 1.683937e-04	ci right 3.067760e-04	k: 46	n:200000
CDH15   200000 perm   52 sec   (3874 perm/sec)   p_kst 2.300000e-04   p_cons 7.983650e-01   p_joint 1.285000e-03

Joint ci ratio: 2.401978e-01	ci left: 1.114611e-03	ci right 1.423230e-03	k: 265	n:210000
Cons ci ratio: 4.297690e-03	ci left: 7.967349e-01	ci right 8.001711e-01	k: 167676	n:210000
KS ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
CDH15   210000 perm   55 sec   (3826 perm/sec)   p_kst 2.238095e-04   p_cons 7.984571e-01   p_joint 1.261905e-03

Joint ci ratio: 1.506489e-01	ci left: 2.836998e-03	ci right 3.303520e-03	k: 674	n:220000
Cons ci ratio: 4.196896e-03	ci left: 7.969271e-01	ci right 8.002832e-01	k: 175694	n:220000
KS ci ratio: 5.146522e-01	ci left: 1.962386e-04	ci right 3.356695e-04	k: 57	n:220000
CDH15   220000 perm   58 sec   (3777 perm/sec)   p_kst 2.590909e-04   p_cons 7.986091e-01   p_joint 3.063636e-03

Joint ci ratio: 1.624231e-01	ci left: 2.320889e-03	ci right 2.735285e-03	k: 580	n:230000
Cons ci ratio: 4.101821e-03	ci left: 7.971862e-01	ci right 8.004671e-01	k: 183731	n:230000
KS ci ratio: 4.938049e-01	ci left: 2.066802e-04	ci right 3.455573e-04	k: 62	n:230000
CDH15   230000 perm   62 sec   (3730 perm/sec)   p_kst 2.695652e-04   p_cons 7.988304e-01   p_joint 2.521739e-03

Joint ci ratio: 1.571002e-01	ci left: 2.384196e-03	ci right 2.794630e-03	k: 620	n:240000
Cons ci ratio: 4.019741e-03	ci left: 7.968770e-01	ci right 8.000908e-01	k: 191637	n:240000
KS ci ratio: 4.753015e-01	ci left: 2.163567e-04	ci right 3.545184e-04	k: 67	n:240000
CDH15   240000 perm   65 sec   (3682 perm/sec)   p_kst 2.791667e-04   p_cons 7.984875e-01   p_joint 2.583333e-03

Joint ci ratio: 1.562281e-01	ci left: 2.315724e-03	ci right 2.711950e-03	k: 627	n:250000
Cons ci ratio: 3.935582e-03	ci left: 7.971508e-01	ci right 8.002982e-01	k: 199682	n:250000
KS ci ratio: 4.718465e-01	ci left: 2.112246e-04	ci right 3.448123e-04	k: 68	n:250000
CDH15   250000 perm   69 sec   (3634 perm/sec)   p_kst 2.720000e-04   p_cons 7.987280e-01   p_joint 2.508000e-03

Joint ci ratio: 1.533261e-01	ci left: 2.315391e-03	ci right 2.703524e-03	k: 651	n:260000
Cons ci ratio: 3.860830e-03	ci left: 7.970416e-01	ci right 8.001286e-01	k: 207633	n:260000
KS ci ratio: 4.718490e-01	ci left: 2.031004e-04	ci right 3.315507e-04	k: 68	n:260000
CDH15   260000 perm   72 sec   (3587 perm/sec)   p_kst 2.615385e-04   p_cons 7.985885e-01   p_joint 2.503846e-03

Joint ci ratio: 1.538070e-01	ci left: 2.215381e-03	ci right 2.588021e-03	k: 647	n:270000
Cons ci ratio: 3.787693e-03	ci left: 7.971528e-01	ci right 8.001815e-01	k: 215641	n:270000
KS ci ratio: 4.684680e-01	ci left: 1.988427e-04	ci right 3.234109e-04	k: 69	n:270000
CDH15   270000 perm   76 sec   (3543 perm/sec)   p_kst 2.555556e-04   p_cons 7.986704e-01   p_joint 2.396296e-03

Joint ci ratio: 1.691558e-01	ci left: 1.752351e-03	ci right 2.079524e-03	k: 535	n:280000
Cons ci ratio: 3.717859e-03	ci left: 7.973174e-01	ci right 8.002907e-01	k: 223666	n:280000
KS ci ratio: 4.587407e-01	ci left: 2.012037e-04	ci right 3.238181e-04	k: 72	n:280000
CDH15   280000 perm   80 sec   (3501 perm/sec)   p_kst 2.571429e-04   p_cons 7.988071e-01   p_joint 1.910714e-03

Joint ci ratio: 1.662351e-01	ci left: 1.754693e-03	ci right 2.076081e-03	k: 554	n:290000
Cons ci ratio: 3.654178e-03	ci left: 7.972567e-01	ci right 8.001787e-01	k: 231629	n:290000
KS ci ratio: 4.409736e-01	ci left: 2.126117e-04	ci right 3.356699e-04	k: 78	n:290000
CDH15   290000 perm   84 sec   (3461 perm/sec)   p_kst 2.689655e-04   p_cons 7.987207e-01   p_joint 1.910345e-03

Joint ci ratio: 1.644686e-01	ci left: 1.734547e-03	ci right 2.048534e-03	k: 566	n:300000
Cons ci ratio: 3.592208e-03	ci left: 7.973308e-01	ci right 8.002034e-01	k: 239631	n:300000
KS ci ratio: 4.382102e-01	ci left: 2.084889e-04	ci right 3.281813e-04	k: 79	n:300000
CDH15   300000 perm   88 sec   (3418 perm/sec)   p_kst 2.633333e-04   p_cons 7.987700e-01   p_joint 1.886667e-03

Joint ci ratio: 1.616422e-01	ci left: 1.740478e-03	ci right 2.049598e-03	k: 586	n:310000
Cons ci ratio: 3.532436e-03	ci left: 7.974782e-01	ci right 8.003034e-01	k: 247657	n:310000
KS ci ratio: 4.354979e-01	ci left: 2.046342e-04	ci right 3.211735e-04	k: 80	n:310000
CDH15   310000 perm   92 sec   (3377 perm/sec)   p_kst 2.580645e-04   p_cons 7.988935e-01   p_joint 1.890323e-03

Joint ci ratio: 1.589567e-01	ci left: 1.746081e-03	ci right 2.050553e-03	k: 606	n:320000
Cons ci ratio: 3.475246e-03	ci left: 7.976448e-01	ci right 8.004247e-01	k: 255692	n:320000
KS ci ratio: 4.354997e-01	ci left: 1.982393e-04	ci right 3.111371e-04	k: 80	n:320000
CDH15   320000 perm   96 sec   (3339 perm/sec)   p_kst 2.500000e-04   p_cons 7.990375e-01   p_joint 1.893750e-03

Joint ci ratio: 1.551658e-01	ci left: 1.780508e-03	ci right 2.082891e-03	k: 636	n:330000
Cons ci ratio: 3.421584e-03	ci left: 7.977227e-01	ci right 8.004599e-01	k: 263701	n:330000
KS ci ratio: 4.276520e-01	ci left: 2.003352e-04	ci right 3.117815e-04	k: 83	n:330000
CDH15   330000 perm   100 sec   (3299 perm/sec)   p_kst 2.515152e-04   p_cons 7.990939e-01   p_joint 1.927273e-03

Joint ci ratio: 1.581843e-01	ci left: 1.660311e-03	ci right 1.948286e-03	k: 612	n:340000
Cons ci ratio: 3.370333e-03	ci left: 7.977964e-01	ci right 8.004926e-01	k: 271710	n:340000
KS ci ratio: 4.251299e-01	ci left: 1.970684e-04	ci right 3.058666e-04	k: 84	n:340000
CDH15   340000 perm   104 sec   (3262 perm/sec)   p_kst 2.470588e-04   p_cons 7.991471e-01   p_joint 1.800000e-03

Joint ci ratio: 1.601635e-01	ci left: 1.571718e-03	ci right 1.848066e-03	k: 597	n:350000
Cons ci ratio: 3.324334e-03	ci left: 7.975739e-01	ci right 8.002326e-01	k: 279617	n:350000
KS ci ratio: 4.202153e-01	ci left: 1.965443e-04	ci right 3.034464e-04	k: 86	n:350000
CDH15   350000 perm   109 sec   (3225 perm/sec)   p_kst 2.457143e-04   p_cons 7.989057e-01   p_joint 1.705714e-03

Joint ci ratio: 1.584514e-01	ci left: 1.562730e-03	ci right 1.834281e-03	k: 610	n:360000
Cons ci ratio: 3.279227e-03	ci left: 7.974560e-01	ci right 8.000781e-01	k: 287557	n:360000
KS ci ratio: 4.202167e-01	ci left: 1.910846e-04	ci right 2.950176e-04	k: 86	n:360000
CDH15   360000 perm   113 sec   (3189 perm/sec)   p_kst 2.388889e-04   p_cons 7.987694e-01   p_joint 1.694444e-03

Joint ci ratio: 1.613920e-01	ci left: 1.463408e-03	ci right 1.722876e-03	k: 588	n:370000
Cons ci ratio: 3.233949e-03	ci left: 7.975398e-01	ci right 8.001258e-01	k: 295569	n:370000
KS ci ratio: 4.202181e-01	ci left: 1.859200e-04	ci right 2.870443e-04	k: 86	n:370000
CDH15   370000 perm   117 sec   (3154 perm/sec)   p_kst 2.324324e-04   p_cons 7.988351e-01   p_joint 1.589189e-03

Joint ci ratio: 1.585885e-01	ci left: 1.477949e-03	ci right 1.735010e-03	k: 609	n:380000
Cons ci ratio: 3.191227e-03	ci left: 7.975455e-01	ci right 8.000973e-01	k: 303553	n:380000
KS ci ratio: 4.154700e-01	ci left: 1.857371e-04	ci right 2.853041e-04	k: 88	n:380000
CDH15   380000 perm   122 sec   (3120 perm/sec)   p_kst 2.315789e-04   p_cons 7.988237e-01   p_joint 1.602632e-03

Joint ci ratio: 1.573056e-01	ci left: 1.464679e-03	ci right 1.717178e-03	k: 619	n:390000
Cons ci ratio: 3.148671e-03	ci left: 7.977028e-01	ci right 8.002210e-01	k: 311596	n:390000
KS ci ratio: 4.154712e-01	ci left: 1.809745e-04	ci right 2.779888e-04	k: 88	n:390000
CDH15   390000 perm   126 sec   (3088 perm/sec)   p_kst 2.256410e-04   p_cons 7.989641e-01   p_joint 1.587179e-03

Joint ci ratio: 1.550703e-01	ci left: 1.471304e-03	ci right 1.721005e-03	k: 637	n:400000
Cons ci ratio: 3.110023e-03	ci left: 7.976194e-01	ci right 8.001063e-01	k: 319546	n:400000
KS ci ratio: 4.042691e-01	ci left: 1.876615e-04	ci right 2.848208e-04	k: 93	n:400000
CDH15   400000 perm   131 sec   (3056 perm/sec)   p_kst 2.325000e-04   p_cons 7.988650e-01   p_joint 1.592500e-03

Joint ci ratio: 1.535147e-01	ci left: 1.465901e-03	ci right 1.711960e-03	k: 650	n:410000
Cons ci ratio: 3.070501e-03	ci left: 7.977773e-01	ci right 8.002331e-01	k: 327593	n:410000
KS ci ratio: 4.021364e-01	ci left: 1.852760e-04	ci right 2.805591e-04	k: 94	n:410000
CDH15   410000 perm   136 sec   (3023 perm/sec)   p_kst 2.292683e-04   p_cons 7.990073e-01   p_joint 1.585366e-03

Joint ci ratio: 1.525815e-01	ci left: 1.449316e-03	ci right 1.690977e-03	k: 658	n:420000
Cons ci ratio: 3.034696e-03	ci left: 7.976893e-01	ci right 8.001161e-01	k: 335540	n:420000
KS ci ratio: 4.000371e-01	ci left: 1.830053e-04	ci right 2.764992e-04	k: 95	n:420000
CDH15   420000 perm   140 sec   (2992 perm/sec)   p_kst 2.261905e-04   p_cons 7.989048e-01   p_joint 1.566667e-03

Joint ci ratio: 1.512116e-01	ci left: 1.442457e-03	ci right 1.680619e-03	k: 670	n:430000
Cons ci ratio: 3.000070e-03	ci left: 7.976102e-01	ci right 8.000090e-01	k: 343489	n:430000
KS ci ratio: 3.979703e-01	ci left: 1.808416e-04	ci right 2.726268e-04	k: 96	n:430000
CDH15   430000 perm   145 sec   (2960 perm/sec)   p_kst 2.232558e-04   p_cons 7.988116e-01   p_joint 1.558140e-03

Joint ci ratio: 1.607308e-01	ci left: 1.241487e-03	ci right 1.460618e-03	k: 593	n:440000
Cons ci ratio: 2.966184e-03	ci left: 7.975805e-01	ci right 7.999520e-01	k: 351458	n:440000
KS ci ratio: 3.959352e-01	ci left: 1.787773e-04	ci right 2.689293e-04	k: 97	n:440000
CDH15   440000 perm   150 sec   (2929 perm/sec)   p_kst 2.204545e-04   p_cons 7.987682e-01   p_joint 1.347727e-03

Joint ci ratio: 1.984107e-01	ci left: 7.806966e-04	ci right 9.547223e-04	k: 389	n:450000
Cons ci ratio: 2.932669e-03	ci left: 7.976346e-01	ci right 7.999794e-01	k: 359464	n:450000
KS ci ratio: 4.086460e-01	ci left: 1.628197e-04	ci right 2.482784e-04	k: 91	n:450000
CDH15   450000 perm   155 sec   (2899 perm/sec)   p_kst 2.022222e-04   p_cons 7.988089e-01   p_joint 8.644444e-04

Joint ci ratio: 2.037089e-01	ci left: 7.224329e-04	ci right 8.883067e-04	k: 369	n:460000
Cons ci ratio: 2.900031e-03	ci left: 7.977126e-01	ci right 8.000315e-01	k: 367482	n:460000
KS ci ratio: 4.021415e-01	ci left: 1.651369e-04	ci right 2.500643e-04	k: 94	n:460000
CDH15   460000 perm   160 sec   (2869 perm/sec)   p_kst 2.043478e-04   p_cons 7.988739e-01   p_joint 8.021739e-04

Joint ci ratio: 2.023469e-01	ci left: 7.171593e-04	ci right 8.805852e-04	k: 374	n:470000
Cons ci ratio: 2.868647e-03	ci left: 7.977661e-01	ci right 8.000600e-01	k: 375490	n:470000
KS ci ratio: 3.959381e-01	ci left: 1.673658e-04	ci right 2.517640e-04	k: 97	n:470000
CDH15   470000 perm   165 sec   (2842 perm/sec)   p_kst 2.063830e-04   p_cons 7.989149e-01   p_joint 7.957447e-04

Joint ci ratio: 2.023486e-01	ci left: 7.022179e-04	ci right 8.622405e-04	k: 374	n:480000
Cons ci ratio: 2.839310e-03	ci left: 7.976985e-01	ci right 7.999687e-01	k: 383441	n:480000
KS ci ratio: 3.900131e-01	ci left: 1.695114e-04	ci right 2.533834e-04	k: 100	n:480000
CDH15   480000 perm   171 sec   (2813 perm/sec)   p_kst 2.083333e-04   p_cons 7.988354e-01   p_joint 7.791667e-04

Joint ci ratio: 1.999631e-01	ci left: 7.053293e-04	ci right 8.639348e-04	k: 383	n:490000
Cons ci ratio: 2.810730e-03	ci left: 7.976481e-01	ci right 7.998953e-01	k: 391399	n:490000
KS ci ratio: 3.862081e-01	ci left: 1.697354e-04	ci right 2.526904e-04	k: 102	n:490000
CDH15   490000 perm   176 sec   (2785 perm/sec)   p_kst 2.081633e-04   p_cons 7.987735e-01   p_joint 7.816327e-04

Joint ci ratio: 1.991875e-01	ci left: 6.969226e-04	ci right 8.529560e-04	k: 386	n:500000
Cons ci ratio: 2.782944e-03	ci left: 7.976059e-01	ci right 7.998306e-01	k: 399360	n:500000
KS ci ratio: 3.862089e-01	ci left: 1.663406e-04	ci right 2.476367e-04	k: 102	n:500000
CDH15   500000 perm   181 sec   (2758 perm/sec)   p_kst 2.040000e-04   p_cons 7.987200e-01   p_joint 7.720000e-04

Joint ci ratio: 2.141019e-01	ci left: 5.865620e-04	ci right 7.290137e-04	k: 334	n:510000
Cons ci ratio: 2.757309e-03	ci left: 7.974082e-01	ci right 7.996119e-01	k: 407241	n:510000
KS ci ratio: 3.825131e-01	ci left: 1.666216e-04	ci right 2.470798e-04	k: 104	n:510000
CDH15   510000 perm   187 sec   (2731 perm/sec)   p_kst 2.039216e-04   p_cons 7.985118e-01   p_joint 6.549020e-04

Joint ci ratio: 1.428442e-01	ci left: 1.342839e-03	ci right 1.551240e-03	k: 751	n:520000
Cons ci ratio: 2.730882e-03	ci left: 7.973936e-01	ci right 7.995761e-01	k: 415213	n:520000
KS ci ratio: 3.807049e-01	ci left: 1.651559e-04	ci right 2.444350e-04	k: 105	n:520000
CDH15   520000 perm   192 sec   (2706 perm/sec)   p_kst 2.019231e-04   p_cons 7.984865e-01   p_joint 1.444231e-03

Joint ci ratio: 1.424672e-01	ci left: 1.324780e-03	ci right 1.529789e-03	k: 755	n:530000
Cons ci ratio: 2.704455e-03	ci left: 7.974686e-01	ci right 7.996301e-01	k: 423232	n:530000
KS ci ratio: 3.754289e-01	ci left: 1.671623e-04	ci right 2.460188e-04	k: 108	n:530000
CDH15   530000 perm   198 sec   (2680 perm/sec)   p_kst 2.037736e-04   p_cons 7.985509e-01   p_joint 1.424528e-03

Joint ci ratio: 1.441984e-01	ci left: 1.268106e-03	ci right 1.466935e-03	k: 737	n:540000
Cons ci ratio: 2.679119e-03	ci left: 7.975000e-01	ci right 7.996413e-01	k: 431229	n:540000
KS ci ratio: 3.754297e-01	ci left: 1.640667e-04	ci right 2.414630e-04	k: 108	n:540000
CDH15   540000 perm   203 sec   (2656 perm/sec)   p_kst 2.000000e-04   p_cons 7.985722e-01   p_joint 1.364815e-03

Joint ci ratio: 1.560869e-01	ci left: 1.056042e-03	ci right 1.236551e-03	k: 629	n:550000
Cons ci ratio: 2.655083e-03	ci left: 7.974575e-01	ci right 7.995794e-01	k: 439186	n:550000
KS ci ratio: 3.737196e-01	ci left: 1.627306e-04	ci right 2.390614e-04	k: 109	n:550000
CDH15   550000 perm   209 sec   (2630 perm/sec)   p_kst 1.981818e-04   p_cons 7.985200e-01   p_joint 1.143636e-03

Joint ci ratio: 1.560885e-01	ci left: 1.037183e-03	ci right 1.214471e-03	k: 629	n:560000
Cons ci ratio: 2.630776e-03	ci left: 7.975275e-01	ci right 7.996301e-01	k: 447205	n:560000
KS ci ratio: 3.671039e-01	ci left: 1.663028e-04	ci right 2.425971e-04	k: 113	n:560000
CDH15   560000 perm   215 sec   (2606 perm/sec)   p_kst 2.017857e-04   p_cons 7.985804e-01   p_joint 1.123214e-03

Joint ci ratio: 1.548645e-01	ci left: 1.035849e-03	ci right 1.211391e-03	k: 639	n:570000
Cons ci ratio: 2.607353e-03	ci left: 7.975670e-01	ci right 7.996510e-01	k: 455208	n:570000
KS ci ratio: 3.623666e-01	ci left: 1.681661e-04	ci right 2.440844e-04	k: 116	n:570000
CDH15   570000 perm   221 sec   (2582 perm/sec)   p_kst 2.035088e-04   p_cons 7.986105e-01   p_joint 1.121053e-03

Joint ci ratio: 1.553527e-01	ci left: 1.011359e-03	ci right 1.183342e-03	k: 635	n:580000
Cons ci ratio: 2.584682e-03	ci left: 7.975880e-01	ci right 7.996539e-01	k: 463201	n:580000
KS ci ratio: 3.593086e-01	ci left: 1.684023e-04	ci right 2.436357e-04	k: 118	n:580000
CDH15   580000 perm   227 sec   (2558 perm/sec)   p_kst 2.034483e-04   p_cons 7.986224e-01   p_joint 1.094828e-03

Joint ci ratio: 1.536702e-01	ci left: 1.017029e-03	ci right 1.187930e-03	k: 649	n:590000
Cons ci ratio: 2.563579e-03	ci left: 7.974844e-01	ci right 7.995331e-01	k: 471121	n:590000
KS ci ratio: 3.534174e-01	ci left: 1.717209e-04	ci right 2.468903e-04	k: 122	n:590000
CDH15   590000 perm   233 sec   (2534 perm/sec)   p_kst 2.067797e-04   p_cons 7.985102e-01   p_joint 1.100000e-03

Joint ci ratio: 1.535534e-01	ci left: 1.001681e-03	ci right 1.169863e-03	k: 650	n:600000
Cons ci ratio: 2.542891e-03	ci left: 7.973959e-01	ci right 7.994278e-01	k: 479048	n:600000
KS ci ratio: 3.491844e-01	ci left: 1.734177e-04	ci right 2.482148e-04	k: 125	n:600000
CDH15   600000 perm   239 sec   (2513 perm/sec)   p_kst 2.083333e-04   p_cons 7.984133e-01   p_joint 1.083333e-03

Joint ci ratio: 1.525031e-01	ci left: 9.994487e-04	ci right 1.166004e-03	k: 659	n:610000
Cons ci ratio: 2.521937e-03	ci left: 7.974074e-01	ci right 7.994226e-01	k: 487034	n:610000
KS ci ratio: 3.491850e-01	ci left: 1.705748e-04	ci right 2.441458e-04	k: 125	n:610000
CDH15   610000 perm   245 sec   (2491 perm/sec)   p_kst 2.049180e-04   p_cons 7.984164e-01   p_joint 1.080328e-03

Joint ci ratio: 1.540305e-01	ci left: 9.631635e-04	ci right 1.125428e-03	k: 646	n:620000
Cons ci ratio: 2.501807e-03	ci left: 7.973782e-01	ci right 7.993771e-01	k: 494995	n:620000
KS ci ratio: 3.478078e-01	ci left: 1.692953e-04	ci right 2.419615e-04	k: 126	n:620000
CDH15   620000 perm   251 sec   (2470 perm/sec)   p_kst 2.032258e-04   p_cons 7.983790e-01   p_joint 1.041935e-03

Joint ci ratio: 1.523902e-01	ci left: 9.692457e-04	ci right 1.130637e-03	k: 660	n:630000
Cons ci ratio: 2.481991e-03	ci left: 7.973706e-01	ci right 7.993537e-01	k: 502969	n:630000
KS ci ratio: 3.464468e-01	ci left: 1.680569e-04	ci right 2.398461e-04	k: 127	n:630000
CDH15   630000 perm   257 sec   (2447 perm/sec)   p_kst 2.015873e-04   p_cons 7.983635e-01   p_joint 1.047619e-03

Joint ci ratio: 1.506895e-01	ci left: 9.766504e-04	ci right 1.137296e-03	k: 675	n:640000
Cons ci ratio: 2.462723e-03	ci left: 7.973523e-01	ci right 7.993200e-01	k: 510936	n:640000
KS ci ratio: 3.451017e-01	ci left: 1.668578e-04	ci right 2.377962e-04	k: 128	n:640000
CDH15   640000 perm   264 sec   (2426 perm/sec)   p_kst 2.000000e-04   p_cons 7.983375e-01   p_joint 1.054688e-03

Joint ci ratio: 1.545131e-01	ci left: 9.127917e-04	ci right 1.067096e-03	k: 642	n:650000
Cons ci ratio: 2.443640e-03	ci left: 7.973686e-01	ci right 7.993210e-01	k: 518925	n:650000
KS ci ratio: 3.437721e-01	ci left: 1.656962e-04	ci right 2.358088e-04	k: 129	n:650000
CDH15   650000 perm   270 sec   (2405 perm/sec)   p_kst 1.984615e-04   p_cons 7.983462e-01   p_joint 9.876923e-04

Joint ci ratio: 1.533254e-01	ci left: 9.135295e-04	ci right 1.066662e-03	k: 652	n:660000
Cons ci ratio: 2.424709e-03	ci left: 7.974224e-01	ci right 7.993598e-01	k: 526939	n:660000
KS ci ratio: 3.386018e-01	ci left: 1.687271e-04	ci right 2.388138e-04	k: 133	n:660000
CDH15   660000 perm   277 sec   (2385 perm/sec)   p_kst 2.015152e-04   p_cons 7.983924e-01   p_joint 9.878788e-04

Joint ci ratio: 1.520500e-01	ci left: 9.156854e-04	ci right 1.067787e-03	k: 663	n:670000
Cons ci ratio: 2.406311e-03	ci left: 7.974612e-01	ci right 7.993839e-01	k: 534944	n:670000
KS ci ratio: 3.348737e-01	ci left: 1.703078e-04	ci right 2.401042e-04	k: 136	n:670000
CDH15   670000 perm   283 sec   (2365 perm/sec)   p_kst 2.029851e-04   p_cons 7.984239e-01   p_joint 9.895522e-04

Joint ci ratio: 1.513681e-01	ci left: 9.107079e-04	ci right 1.061242e-03	k: 669	n:680000
Cons ci ratio: 2.388238e-03	ci left: 7.975107e-01	ci right 7.994191e-01	k: 542957	n:680000
KS ci ratio: 3.324558e-01	ci left: 1.704981e-04	ci right 2.397599e-04	k: 138	n:680000
CDH15   680000 perm   290 sec   (2346 perm/sec)   p_kst 2.029412e-04   p_cons 7.984662e-01   p_joint 9.838235e-04

Joint ci ratio: 1.202524e-01	ci left: 1.445196e-03	ci right 1.631493e-03	k: 1060	n:690000
Cons ci ratio: 2.370384e-03	ci left: 7.975835e-01	ci right 7.994777e-01	k: 550987	n:690000
KS ci ratio: 3.266323e-01	ci left: 1.746741e-04	ci right 2.441287e-04	k: 143	n:690000
CDH15   690000 perm   297 sec   (2326 perm/sec)   p_kst 2.072464e-04   p_cons 7.985319e-01   p_joint 1.536232e-03

Joint ci ratio: 1.271622e-01	ci left: 1.269490e-03	ci right 1.443250e-03	k: 948	n:700000
Cons ci ratio: 2.353521e-03	ci left: 7.975727e-01	ci right 7.994534e-01	k: 558960	n:700000
KS ci ratio: 3.266328e-01	ci left: 1.721787e-04	ci right 2.406412e-04	k: 143	n:700000
CDH15   700000 perm   303 sec   (2307 perm/sec)   p_kst 2.042857e-04   p_cons 7.985143e-01   p_joint 1.354286e-03

Joint ci ratio: 1.262345e-01	ci left: 1.270704e-03	ci right 1.443265e-03	k: 962	n:710000
Cons ci ratio: 2.336613e-03	ci left: 7.976173e-01	ci right 7.994845e-01	k: 566972	n:710000
KS ci ratio: 3.221882e-01	ci left: 1.749288e-04	ci right 2.433429e-04	k: 147	n:710000
CDH15   710000 perm   310 sec   (2289 perm/sec)   p_kst 2.070423e-04   p_cons 7.985521e-01   p_joint 1.354930e-03

Joint ci ratio: 1.252625e-01	ci left: 1.273233e-03	ci right 1.444708e-03	k: 977	n:720000
Cons ci ratio: 2.320025e-03	ci left: 7.976662e-01	ci right 7.995203e-01	k: 574988	n:720000
KS ci ratio: 3.189714e-01	ci left: 1.763307e-04	ci right 2.444639e-04	k: 150	n:720000
CDH15   720000 perm   317 sec   (2271 perm/sec)   p_kst 2.083333e-04   p_cons 7.985944e-01   p_joint 1.356944e-03

Joint ci ratio: 1.243754e-01	ci left: 1.274371e-03	ci right 1.444694e-03	k: 991	n:730000
Cons ci ratio: 2.303912e-03	ci left: 7.976960e-01	ci right 7.995373e-01	k: 582991	n:730000
KS ci ratio: 3.179207e-01	ci left: 1.751756e-04	ci right 2.425941e-04	k: 151	n:730000
CDH15   730000 perm   324 sec   (2253 perm/sec)   p_kst 2.068493e-04   p_cons 7.986178e-01   p_joint 1.357534e-03

Joint ci ratio: 1.237536e-01	ci left: 1.270244e-03	ci right 1.439104e-03	k: 1001	n:740000
Cons ci ratio: 2.288505e-03	ci left: 7.976722e-01	ci right 7.995011e-01	k: 590955	n:740000
KS ci ratio: 3.158495e-01	ci left: 1.752961e-04	ci right 2.422327e-04	k: 153	n:740000
CDH15   740000 perm   331 sec   (2236 perm/sec)   p_kst 2.067568e-04   p_cons 7.985878e-01   p_joint 1.352703e-03

Joint ci ratio: 1.244405e-01	ci left: 1.239094e-03	ci right 1.404796e-03	k: 990	n:750000
Cons ci ratio: 2.272480e-03	ci left: 7.977800e-01	ci right 7.995963e-01	k: 599017	n:750000
KS ci ratio: 3.148292e-01	ci left: 1.741866e-04	ci right 2.404415e-04	k: 154	n:750000
CDH15   750000 perm   338 sec   (2218 perm/sec)   p_kst 2.053333e-04   p_cons 7.986893e-01   p_joint 1.320000e-03

Joint ci ratio: 1.238176e-01	ci left: 1.235540e-03	ci right 1.399878e-03	k: 1000	n:760000
Cons ci ratio: 2.257775e-03	ci left: 7.977440e-01	ci right 7.995485e-01	k: 606972	n:760000
KS ci ratio: 3.128175e-01	ci left: 1.743191e-04	ci right 2.401159e-04	k: 156	n:760000
CDH15   760000 perm   345 sec   (2202 perm/sec)   p_kst 2.052632e-04   p_cons 7.986474e-01   p_joint 1.315789e-03

Joint ci ratio: 1.232040e-01	ci left: 1.232079e-03	ci right 1.395086e-03	k: 1010	n:770000
Cons ci ratio: 2.243442e-03	ci left: 7.976960e-01	ci right 7.994888e-01	k: 614917	n:770000
KS ci ratio: 3.118263e-01	ci left: 1.732521e-04	ci right 2.383977e-04	k: 157	n:770000
CDH15   770000 perm   353 sec   (2184 perm/sec)   p_kst 2.038961e-04   p_cons 7.985935e-01   p_joint 1.311688e-03

Joint ci ratio: 1.225394e-01	ci left: 1.229952e-03	ci right 1.391736e-03	k: 1021	n:780000
Cons ci ratio: 2.229502e-03	ci left: 7.976312e-01	ci right 7.994127e-01	k: 622848	n:780000
KS ci ratio: 3.108443e-01	ci left: 1.722128e-04	ci right 2.367233e-04	k: 158	n:780000
CDH15   780000 perm   360 sec   (2168 perm/sec)   p_kst 2.025641e-04   p_cons 7.985231e-01   p_joint 1.308974e-03

Joint ci ratio: 1.220630e-01	ci left: 1.224200e-03	ci right 1.384556e-03	k: 1029	n:790000
Cons ci ratio: 2.215322e-03	ci left: 7.976404e-01	ci right 7.994106e-01	k: 630836	n:790000
KS ci ratio: 3.098716e-01	ci left: 1.712001e-04	ci right 2.350909e-04	k: 159	n:790000
CDH15   790000 perm   367 sec   (2152 perm/sec)   p_kst 2.012658e-04   p_cons 7.985266e-01   p_joint 1.302532e-03

Joint ci ratio: 1.254639e-01	ci left: 1.142272e-03	ci right 1.296376e-03	k: 974	n:800000
Cons ci ratio: 2.201675e-03	ci left: 7.976106e-01	ci right 7.993698e-01	k: 638793	n:800000
KS ci ratio: 3.089080e-01	ci left: 1.702131e-04	ci right 2.334990e-04	k: 160	n:800000
CDH15   800000 perm   374 sec   (2136 perm/sec)   p_kst 2.000000e-04   p_cons 7.984912e-01   p_joint 1.217500e-03

Joint ci ratio: 1.253362e-01	ci left: 1.130562e-03	ci right 1.282918e-03	k: 976	n:810000
Cons ci ratio: 2.188318e-03	ci left: 7.975753e-01	ci right 7.993238e-01	k: 646745	n:810000
KS ci ratio: 3.079533e-01	ci left: 1.692507e-04	ci right 2.319462e-04	k: 161	n:810000
CDH15   810000 perm   382 sec   (2120 perm/sec)   p_kst 1.987654e-04   p_cons 7.984506e-01   p_joint 1.204938e-03

Joint ci ratio: 1.247631e-01	ci left: 1.127406e-03	ci right 1.278592e-03	k: 985	n:820000
Cons ci ratio: 2.174856e-03	ci left: 7.975923e-01	ci right 7.993300e-01	k: 654739	n:820000
KS ci ratio: 3.060698e-01	ci left: 1.694378e-04	ci right 2.317439e-04	k: 163	n:820000
CDH15   820000 perm   390 sec   (2105 perm/sec)   p_kst 1.987805e-04   p_cons 7.984622e-01   p_joint 1.201220e-03

Joint ci ratio: 1.237627e-01	ci left: 1.132501e-03	ci right 1.283063e-03	k: 1001	n:830000
Cons ci ratio: 2.161792e-03	ci left: 7.975859e-01	ci right 7.993132e-01	k: 662714	n:830000
KS ci ratio: 3.024038e-01	ci left: 1.718479e-04	ci right 2.341377e-04	k: 167	n:830000
CDH15   830000 perm   397 sec   (2089 perm/sec)   p_kst 2.012048e-04   p_cons 7.984506e-01   p_joint 1.206024e-03

Joint ci ratio: 1.229675e-01	ci left: 1.134018e-03	ci right 1.283742e-03	k: 1014	n:840000
Cons ci ratio: 2.148341e-03	ci left: 7.976728e-01	ci right 7.993895e-01	k: 670767	n:840000
KS ci ratio: 3.006197e-01	ci left: 1.720029e-04	ci right 2.339109e-04	k: 169	n:840000
CDH15   840000 perm   405 sec   (2074 perm/sec)   p_kst 2.011905e-04   p_cons 7.985321e-01   p_joint 1.207143e-03

Joint ci ratio: 1.247024e-01	ci left: 1.088754e-03	ci right 1.234680e-03	k: 986	n:850000
Cons ci ratio: 2.135732e-03	ci left: 7.976680e-01	ci right 7.993746e-01	k: 678744	n:850000
KS ci ratio: 2.980016e-01	ci left: 1.732438e-04	ci right 2.349526e-04	k: 172	n:850000
CDH15   850000 perm   413 sec   (2058 perm/sec)   p_kst 2.023529e-04   p_cons 7.985224e-01   p_joint 1.160000e-03

Joint ci ratio: 1.242004e-01	ci left: 1.085107e-03	ci right 1.229915e-03	k: 994	n:860000
Cons ci ratio: 2.124124e-03	ci left: 7.975447e-01	ci right 7.992417e-01	k: 686619	n:860000
KS ci ratio: 2.962938e-01	ci left: 1.733816e-04	ci right 2.347191e-04	k: 174	n:860000
CDH15   860000 perm   421 sec   (2043 perm/sec)   p_kst 2.023256e-04   p_cons 7.983942e-01   p_joint 1.155814e-03

Joint ci ratio: 1.274483e-01	ci left: 1.016969e-03	ci right 1.156502e-03	k: 944	n:870000
Cons ci ratio: 2.111941e-03	ci left: 7.975404e-01	ci right 7.992277e-01	k: 694595	n:870000
KS ci ratio: 2.937862e-01	ci left: 1.745818e-04	ci right 2.357239e-04	k: 177	n:870000
CDH15   870000 perm   429 sec   (2028 perm/sec)   p_kst 2.034483e-04   p_cons 7.983851e-01   p_joint 1.085057e-03

Joint ci ratio: 1.269124e-01	ci left: 1.014214e-03	ci right 1.152740e-03	k: 952	n:880000
Cons ci ratio: 2.100113e-03	ci left: 7.975136e-01	ci right 7.991913e-01	k: 702551	n:880000
KS ci ratio: 2.937865e-01	ci left: 1.725979e-04	ci right 2.330452e-04	k: 177	n:880000
CDH15   880000 perm   437 sec   (2013 perm/sec)   p_kst 2.011364e-04   p_cons 7.983534e-01   p_joint 1.081818e-03

Joint ci ratio: 1.277887e-01	ci left: 9.886764e-04	ci right 1.124717e-03	k: 939	n:890000
Cons ci ratio: 2.088584e-03	ci left: 7.974716e-01	ci right 7.991400e-01	k: 710493	n:890000
KS ci ratio: 2.913415e-01	ci left: 1.737820e-04	ci right 2.340442e-04	k: 180	n:890000
CDH15   890000 perm   445 sec   (1998 perm/sec)   p_kst 2.022472e-04   p_cons 7.983067e-01   p_joint 1.055056e-03

Joint ci ratio: 1.285446e-01	ci left: 9.658601e-04	ci right 1.099607e-03	k: 928	n:900000
Cons ci ratio: 2.076519e-03	ci left: 7.975429e-01	ci right 7.992018e-01	k: 718536	n:900000
KS ci ratio: 2.905402e-01	ci left: 1.728812e-04	ci right 2.326357e-04	k: 181	n:900000
CDH15   900000 perm   454 sec   (1983 perm/sec)   p_kst 2.011111e-04   p_cons 7.983733e-01   p_joint 1.031111e-03

Joint ci ratio: 1.275865e-01	ci left: 9.701381e-04	ci right 1.103400e-03	k: 942	n:910000
Cons ci ratio: 2.065069e-03	ci left: 7.975489e-01	ci right 7.991987e-01	k: 726521	n:910000
KS ci ratio: 2.897454e-01	ci left: 1.720003e-04	ci right 2.312579e-04	k: 182	n:910000
CDH15   910000 perm   462 sec   (1969 perm/sec)   p_kst 2.000000e-04   p_cons 7.983747e-01   p_joint 1.035165e-03

Joint ci ratio: 1.281325e-01	ci left: 9.511750e-04	ci right 1.082434e-03	k: 934	n:920000
Cons ci ratio: 2.053245e-03	ci left: 7.976429e-01	ci right 7.992834e-01	k: 734587	n:920000
KS ci ratio: 2.873991e-01	ci left: 1.731556e-04	ci right 2.322404e-04	k: 185	n:920000
CDH15   920000 perm   470 sec   (1956 perm/sec)   p_kst 2.010870e-04   p_cons 7.984641e-01   p_joint 1.015217e-03

Joint ci ratio: 1.280646e-01	ci left: 9.419878e-04	ci right 1.071905e-03	k: 935	n:930000
Cons ci ratio: 2.042256e-03	ci left: 7.976348e-01	ci right 7.992665e-01	k: 742560	n:930000
KS ci ratio: 2.873994e-01	ci left: 1.712937e-04	ci right 2.297433e-04	k: 185	n:930000
CDH15   930000 perm   479 sec   (1943 perm/sec)   p_kst 1.989247e-04   p_cons 7.984516e-01   p_joint 1.005376e-03

Joint ci ratio: 1.287557e-01	ci left: 9.216695e-04	ci right 1.049523e-03	k: 925	n:940000
Cons ci ratio: 2.032092e-03	ci left: 7.975236e-01	ci right 7.991469e-01	k: 750436	n:940000
KS ci ratio: 2.873998e-01	ci left: 1.694714e-04	ci right 2.272992e-04	k: 185	n:940000
CDH15   940000 perm   487 sec   (1930 perm/sec)   p_kst 1.968085e-04   p_cons 7.983362e-01   p_joint 9.840426e-04

Joint ci ratio: 1.279293e-01	ci left: 9.241938e-04	ci right 1.051512e-03	k: 937	n:950000
Cons ci ratio: 2.021067e-03	ci left: 7.975760e-01	ci right 7.991906e-01	k: 758465	n:950000
KS ci ratio: 2.874001e-01	ci left: 1.676875e-04	ci right 2.249066e-04	k: 185	n:950000
CDH15   950000 perm   495 sec   (1918 perm/sec)   p_kst 1.947368e-04   p_cons 7.983842e-01   p_joint 9.863158e-04

Joint ci ratio: 1.273200e-01	ci left: 9.236425e-04	ci right 1.050233e-03	k: 946	n:960000
Cons ci ratio: 2.010271e-03	ci left: 7.976190e-01	ci right 7.992250e-01	k: 766486	n:960000
KS ci ratio: 2.858672e-01	ci left: 1.678743e-04	ci right 2.247966e-04	k: 187	n:960000
CDH15   960000 perm   504 sec   (1905 perm/sec)   p_kst 1.947917e-04   p_cons 7.984229e-01   p_joint 9.854167e-04

Joint ci ratio: 1.268522e-01	ci left: 9.211074e-04	ci right 1.046852e-03	k: 953	n:970000
Cons ci ratio: 1.999884e-03	ci left: 7.976229e-01	ci right 7.992207e-01	k: 774470	n:970000
KS ci ratio: 2.843587e-01	ci left: 1.680581e-04	ci right 2.246880e-04	k: 189	n:970000
CDH15   970000 perm   512 sec   (1894 perm/sec)   p_kst 1.948454e-04   p_cons 7.984227e-01   p_joint 9.824742e-04

Joint ci ratio: 1.265875e-01	ci left: 9.156604e-04	ci right 1.040381e-03	k: 957	n:980000
Cons ci ratio: 1.989441e-03	ci left: 7.976615e-01	ci right 7.992510e-01	k: 782488	n:980000
KS ci ratio: 2.836135e-01	ci left: 1.672909e-04	ci right 2.234881e-04	k: 190	n:980000
CDH15   980000 perm   521 sec   (1882 perm/sec)   p_kst 1.938776e-04   p_cons 7.984571e-01   p_joint 9.765306e-04

Joint ci ratio: 1.257370e-01	ci left: 9.191283e-04	ci right 1.043417e-03	k: 970	n:990000
Cons ci ratio: 1.979036e-03	ci left: 7.977196e-01	ci right 7.993009e-01	k: 790526	n:990000
KS ci ratio: 2.814119e-01	ci left: 1.684168e-04	ci right 2.244751e-04	k: 193	n:990000
CDH15   990000 perm   530 sec   (1870 perm/sec)   p_kst 1.949495e-04   p_cons 7.985111e-01   p_joint 9.797980e-04

Joint ci ratio: 1.254792e-01	ci left: 9.138112e-04	ci right 1.037109e-03	k: 974	n:1000000
Cons ci ratio: 1.969270e-03	ci left: 7.976984e-01	ci right 7.992718e-01	k: 798486	n:1000000
KS ci ratio: 2.785545e-01	ci left: 1.704518e-04	ci right 2.265104e-04	k: 197	n:1000000
CDH15   1000000 perm   538 sec   (1858 perm/sec)   p_kst 1.970000e-04   p_cons 7.984860e-01   p_joint 9.740000e-04

Joint ci ratio: 1.263914e-01	ci left: 8.913382e-04	ci right 1.012543e-03	k: 960	n:1010000
Cons ci ratio: 1.959707e-03	ci left: 7.976678e-01	ci right 7.992335e-01	k: 806436	n:1010000
KS ci ratio: 2.778539e-01	ci left: 1.696852e-04	ci right 2.253267e-04	k: 198	n:1010000
CDH15   1010000 perm   547 sec   (1846 perm/sec)   p_kst 1.960396e-04   p_cons 7.984515e-01   p_joint 9.504950e-04

Joint ci ratio: 1.261950e-01	ci left: 8.854477e-04	ci right 1.005651e-03	k: 963	n:1020000
Cons ci ratio: 1.950097e-03	ci left: 7.976682e-01	ci right 7.992262e-01	k: 814417	n:1020000
KS ci ratio: 2.764681e-01	ci left: 1.698461e-04	ci right 2.252143e-04	k: 200	n:1020000
CDH15   1020000 perm   556 sec   (1834 perm/sec)   p_kst 1.960784e-04   p_cons 7.984480e-01   p_joint 9.441176e-04

Joint ci ratio: 1.267893e-01	ci left: 8.683892e-04	ci right 9.868734e-04	k: 954	n:1030000
Cons ci ratio: 1.940816e-03	ci left: 7.976375e-01	ci right 7.991880e-01	k: 822366	n:1030000
KS ci ratio: 2.751028e-01	ci left: 1.700046e-04	ci right 2.251035e-04	k: 202	n:1030000
CDH15   1030000 perm   565 sec   (1823 perm/sec)   p_kst 1.961165e-04   p_cons 7.984136e-01   p_joint 9.262136e-04

Joint ci ratio: 1.261961e-01	ci left: 8.684193e-04	ci right 9.863117e-04	k: 963	n:1040000
Cons ci ratio: 1.931215e-03	ci left: 7.976825e-01	ci right 7.992254e-01	k: 830393	n:1040000
KS ci ratio: 2.724316e-01	ci left: 1.719522e-04	ci right 2.270485e-04	k: 206	n:1040000
CDH15   1040000 perm   574 sec   (1812 perm/sec)   p_kst 1.980769e-04   p_cons 7.984548e-01   p_joint 9.259615e-04

Joint ci ratio: 1.256758e-01	ci left: 8.675277e-04	ci right 9.847773e-04	k: 971	n:1050000
Cons ci ratio: 1.921670e-03	ci left: 7.977410e-01	ci right 7.992764e-01	k: 838435	n:1050000
KS ci ratio: 2.724318e-01	ci left: 1.703145e-04	ci right 2.248862e-04	k: 206	n:1050000
CDH15   1050000 perm   583 sec   (1800 perm/sec)   p_kst 1.961905e-04   p_cons 7.985095e-01   p_joint 9.247619e-04

Joint ci ratio: 1.249070e-01	ci left: 8.703095e-04	ci right 9.871622e-04	k: 983	n:1060000
Cons ci ratio: 1.912433e-03	ci left: 7.977701e-01	ci right 7.992981e-01	k: 846447	n:1060000
KS ci ratio: 2.691997e-01	ci left: 1.731046e-04	ci right 2.278010e-04	k: 211	n:1060000
CDH15   1060000 perm   593 sec   (1788 perm/sec)   p_kst 1.990566e-04   p_cons 7.985349e-01   p_joint 9.273585e-04

Joint ci ratio: 1.242770e-01	ci left: 8.712303e-04	ci right 9.875733e-04	k: 993	n:1070000
Cons ci ratio: 1.903571e-03	ci left: 7.977574e-01	ci right 7.992784e-01	k: 854415	n:1070000
KS ci ratio: 2.673148e-01	ci left: 1.741020e-04	ci right 2.286639e-04	k: 214	n:1070000
CDH15   1070000 perm   602 sec   (1777 perm/sec)   p_kst 2.000000e-04   p_cons 7.985187e-01   p_joint 9.280374e-04

Joint ci ratio: 1.237800e-01	ci left: 8.703409e-04	ci right 9.860663e-04	k: 1001	n:1080000
Cons ci ratio: 1.895246e-03	ci left: 7.976745e-01	ci right 7.991887e-01	k: 862307	n:1080000
KS ci ratio: 2.666954e-01	ci left: 1.733539e-04	ci right 2.275344e-04	k: 215	n:1080000
CDH15   1080000 perm   611 sec   (1767 perm/sec)   p_kst 1.990741e-04   p_cons 7.984324e-01   p_joint 9.268519e-04

Joint ci ratio: 1.232278e-01	ci left: 8.703579e-04	ci right 9.855316e-04	k: 1010	n:1090000
Cons ci ratio: 1.886738e-03	ci left: 7.976428e-01	ci right 7.991501e-01	k: 870253	n:1090000
KS ci ratio: 2.642596e-01	ci left: 1.751890e-04	ci right 2.293602e-04	k: 219	n:1090000
CDH15   1090000 perm   621 sec   (1756 perm/sec)   p_kst 2.009174e-04   p_cons 7.983972e-01   p_joint 9.266055e-04

Joint ci ratio: 1.227432e-01	ci left: 8.694945e-04	ci right 9.840686e-04	k: 1018	n:1100000
Cons ci ratio: 1.878275e-03	ci left: 7.976235e-01	ci right 7.991240e-01	k: 878212	n:1100000
KS ci ratio: 2.636611e-01	ci left: 1.744453e-04	ci right 2.282443e-04	k: 220	n:1100000
CDH15   1100000 perm   630 sec   (1745 perm/sec)   p_kst 2.000000e-04   p_cons 7.983745e-01   p_joint 9.254545e-04

Joint ci ratio: 1.232899e-01	ci left: 8.538022e-04	ci right 9.668462e-04	k: 1009	n:1110000
Cons ci ratio: 1.869742e-03	ci left: 7.976362e-01	ci right 7.991298e-01	k: 886206	n:1110000
KS ci ratio: 2.630667e-01	ci left: 1.737151e-04	ci right 2.271483e-04	k: 221	n:1110000
CDH15   1110000 perm   640 sec   (1734 perm/sec)   p_kst 1.990991e-04   p_cons 7.983838e-01   p_joint 9.090090e-04

Joint ci ratio: 1.223841e-01	ci left: 8.591605e-04	ci right 9.720176e-04	k: 1024	n:1120000
Cons ci ratio: 1.861540e-03	ci left: 7.976111e-01	ci right 7.990981e-01	k: 894158	n:1120000
KS ci ratio: 2.613070e-01	ci left: 1.746667e-04	ci right 2.279744e-04	k: 224	n:1120000
CDH15   1120000 perm   650 sec   (1724 perm/sec)   p_kst 2.000000e-04   p_cons 7.983554e-01   p_joint 9.142857e-04

Joint ci ratio: 1.217914e-01	ci left: 8.601366e-04	ci right 9.725354e-04	k: 1034	n:1130000
Cons ci ratio: 1.853548e-03	ci left: 7.975687e-01	ci right 7.990493e-01	k: 902090	n:1130000
KS ci ratio: 2.590145e-01	ci left: 1.764300e-04	ci right 2.297270e-04	k: 228	n:1130000
CDH15   1130000 perm   660 sec   (1713 perm/sec)   p_kst 2.017699e-04   p_cons 7.983097e-01   p_joint 9.150442e-04

Joint ci ratio: 1.229871e-01	ci left: 8.355841e-04	ci right 9.459244e-04	k: 1014	n:1140000
Cons ci ratio: 1.845838e-03	ci left: 7.974954e-01	ci right 7.989697e-01	k: 909986	n:1140000
KS ci ratio: 2.567814e-01	ci left: 1.781643e-04	ci right 2.314469e-04	k: 232	n:1140000
CDH15   1140000 perm   670 sec   (1703 perm/sec)   p_kst 2.035088e-04   p_cons 7.982333e-01   p_joint 8.894737e-04

Joint ci ratio: 1.223856e-01	ci left: 8.367470e-04	ci right 9.466614e-04	k: 1024	n:1150000
Cons ci ratio: 1.837697e-03	ci left: 7.975158e-01	ci right 7.989836e-01	k: 917988	n:1150000
KS ci ratio: 2.535373e-01	ci left: 1.814989e-04	ci right 2.349846e-04	k: 238	n:1150000
CDH15   1150000 perm   679 sec   (1692 perm/sec)   p_kst 2.069565e-04   p_cons 7.982504e-01   p_joint 8.904348e-04

Joint ci ratio: 1.245955e-01	ci left: 7.994568e-04	ci right 9.065090e-04	k: 988	n:1160000
Cons ci ratio: 1.829595e-03	ci left: 7.975479e-01	ci right 7.990092e-01	k: 926004	n:1160000
KS ci ratio: 2.530086e-01	ci left: 1.807416e-04	ci right 2.338755e-04	k: 239	n:1160000
CDH15   1160000 perm   690 sec   (1682 perm/sec)   p_kst 2.060345e-04   p_cons 7.982793e-01   p_joint 8.517241e-04

Joint ci ratio: 1.239082e-01	ci left: 8.017334e-04	ci right 9.084548e-04	k: 999	n:1170000
Cons ci ratio: 1.821739e-03	ci left: 7.975546e-01	ci right 7.990097e-01	k: 933991	n:1170000
KS ci ratio: 2.514419e-01	ci left: 1.815988e-04	ci right 2.346024e-04	k: 242	n:1170000
CDH15   1170000 perm   700 sec   (1672 perm/sec)   p_kst 2.068376e-04   p_cons 7.982829e-01   p_joint 8.538462e-04

Joint ci ratio: 1.232932e-01	ci left: 8.031516e-04	ci right 9.094924e-04	k: 1009	n:1180000
Cons ci ratio: 1.813979e-03	ci left: 7.975621e-01	ci right 7.990110e-01	k: 941979	n:1180000
KS ci ratio: 2.514421e-01	ci left: 1.800598e-04	ci right 2.326143e-04	k: 242	n:1180000
CDH15   1180000 perm   709 sec   (1663 perm/sec)   p_kst 2.050847e-04   p_cons 7.982873e-01   p_joint 8.550847e-04

Joint ci ratio: 1.230501e-01	ci left: 7.996602e-04	ci right 9.053146e-04	k: 1013	n:1190000
Cons ci ratio: 1.806435e-03	ci left: 7.975484e-01	ci right 7.989913e-01	k: 949942	n:1190000
KS ci ratio: 2.509265e-01	ci left: 1.793342e-04	ci right 2.315527e-04	k: 243	n:1190000
CDH15   1190000 perm   720 sec   (1654 perm/sec)   p_kst 2.042017e-04   p_cons 7.982706e-01   p_joint 8.512605e-04

Joint ci ratio: 1.229898e-01	ci left: 7.938039e-04	ci right 8.986295e-04	k: 1014	n:1200000
Cons ci ratio: 1.798546e-03	ci left: 7.976135e-01	ci right 7.990501e-01	k: 957999	n:1200000
KS ci ratio: 2.499043e-01	ci left: 1.794018e-04	ci right 2.313941e-04	k: 245	n:1200000
CDH15   1200000 perm   730 sec   (1645 perm/sec)   p_kst 2.041667e-04   p_cons 7.983325e-01   p_joint 8.450000e-04

Joint ci ratio: 1.231117e-01	ci left: 7.856413e-04	ci right 8.894993e-04	k: 1012	n:1210000
Cons ci ratio: 1.791128e-03	ci left: 7.976112e-01	ci right 7.990419e-01	k: 965976	n:1210000
KS ci ratio: 2.493981e-01	ci left: 1.786939e-04	ci right 2.303599e-04	k: 246	n:1210000
CDH15   1210000 perm   740 sec   (1635 perm/sec)   p_kst 2.033058e-04   p_cons 7.983273e-01   p_joint 8.363636e-04

Joint ci ratio: 1.226284e-01	ci left: 7.855574e-04	ci right 8.889671e-04	k: 1020	n:1220000
Cons ci ratio: 1.783651e-03	ci left: 7.976361e-01	ci right 7.990609e-01	k: 973986	n:1220000
KS ci ratio: 2.483945e-01	ci left: 1.787663e-04	ci right 2.302130e-04	k: 248	n:1220000
CDH15   1220000 perm   750 sec   (1626 perm/sec)   p_kst 2.032787e-04   p_cons 7.983492e-01   p_joint 8.360656e-04

Joint ci ratio: 1.232343e-01	ci left: 7.712904e-04	ci right 8.733602e-04	k: 1010	n:1230000
Cons ci ratio: 1.776441e-03	ci left: 7.976288e-01	ci right 7.990478e-01	k: 981957	n:1230000
KS ci ratio: 2.478973e-01	ci left: 1.780753e-04	ci right 2.292049e-04	k: 249	n:1230000
CDH15   1230000 perm   761 sec   (1617 perm/sec)   p_kst 2.024390e-04   p_cons 7.983390e-01   p_joint 8.211382e-04

Joint ci ratio: 1.232348e-01	ci left: 7.650701e-04	ci right 8.663172e-04	k: 1010	n:1240000
Cons ci ratio: 1.769217e-03	ci left: 7.976403e-01	ci right 7.990535e-01	k: 989951	n:1240000
KS ci ratio: 2.478975e-01	ci left: 1.766392e-04	ci right 2.273565e-04	k: 249	n:1240000
CDH15   1240000 perm   771 sec   (1608 perm/sec)   p_kst 2.008065e-04   p_cons 7.983476e-01   p_joint 8.145161e-04

Joint ci ratio: 1.243480e-01	ci left: 7.449950e-04	ci right 8.445415e-04	k: 992	n:1250000
Cons ci ratio: 1.762045e-03	ci left: 7.976579e-01	ci right 7.990655e-01	k: 997953	n:1250000
KS ci ratio: 2.478977e-01	ci left: 1.752261e-04	ci right 2.255376e-04	k: 249	n:1250000
CDH15   1250000 perm   782 sec   (1599 perm/sec)   p_kst 1.992000e-04   p_cons 7.983624e-01   p_joint 7.936000e-04

Joint ci ratio: 1.238501e-01	ci left: 7.452344e-04	ci right 8.443850e-04	k: 1000	n:1260000
Cons ci ratio: 1.755214e-03	ci left: 7.976285e-01	ci right 7.990305e-01	k: 1005896	n:1260000
KS ci ratio: 2.469120e-01	ci left: 1.753243e-04	ci right 2.254332e-04	k: 251	n:1260000
CDH15   1260000 perm   793 sec   (1590 perm/sec)   p_kst 1.992063e-04   p_cons 7.983302e-01   p_joint 7.936508e-04

Joint ci ratio: 1.231750e-01	ci left: 7.477603e-04	ci right 8.466651e-04	k: 1011	n:1270000
Cons ci ratio: 1.748403e-03	ci left: 7.976105e-01	ci right 7.990070e-01	k: 1013853	n:1270000
KS ci ratio: 2.454552e-01	ci left: 1.761603e-04	ci right 2.261657e-04	k: 254	n:1270000
CDH15   1270000 perm   803 sec   (1581 perm/sec)   p_kst 2.000000e-04   p_cons 7.983094e-01   p_joint 7.960630e-04

Joint ci ratio: 1.226910e-01	ci left: 7.479763e-04	ci right 8.464927e-04	k: 1019	n:1280000
Cons ci ratio: 1.741450e-03	ci left: 7.976335e-01	ci right 7.990245e-01	k: 1021862	n:1280000
KS ci ratio: 2.440238e-01	ci left: 1.769841e-04	ci right 2.268860e-04	k: 257	n:1280000
CDH15   1280000 perm   814 sec   (1572 perm/sec)   p_kst 2.007813e-04   p_cons 7.983297e-01   p_joint 7.960938e-04

Joint ci ratio: 1.223915e-01	ci left: 7.459351e-04	ci right 8.439255e-04	k: 1024	n:1290000
Cons ci ratio: 1.734551e-03	ci left: 7.976616e-01	ci right 7.990471e-01	k: 1029878	n:1290000
KS ci ratio: 2.435524e-01	ci left: 1.763399e-04	ci right 2.259497e-04	k: 258	n:1290000
CDH15   1290000 perm   825 sec   (1564 perm/sec)   p_kst 2.000000e-04   p_cons 7.983550e-01   p_joint 7.937984e-04

Joint ci ratio: 1.226918e-01	ci left: 7.364687e-04	ci right 8.334700e-04	k: 1019	n:1300000
Cons ci ratio: 1.727910e-03	ci left: 7.976562e-01	ci right 7.990364e-01	k: 1037851	n:1300000
KS ci ratio: 2.430837e-01	ci left: 1.757058e-04	ci right 2.250276e-04	k: 259	n:1300000
CDH15   1300000 perm   836 sec   (1555 perm/sec)   p_kst 1.992308e-04   p_cons 7.983469e-01   p_joint 7.838462e-04

Joint ci ratio: 1.237901e-01	ci left: 7.175295e-04	ci right 8.129443e-04	k: 1001	n:1310000
Cons ci ratio: 1.720745e-03	ci left: 7.977632e-01	ci right 7.991378e-01	k: 1045971	n:1310000
KS ci ratio: 2.421541e-01	ci left: 1.757984e-04	ci right 2.249292e-04	k: 261	n:1310000
CDH15   1310000 perm   847 sec   (1547 perm/sec)   p_kst 1.992366e-04   p_cons 7.984511e-01   p_joint 7.641221e-04

Joint ci ratio: 1.232988e-01	ci left: 7.179669e-04	ci right 8.130335e-04	k: 1009	n:1320000
Cons ci ratio: 1.714128e-03	ci left: 7.977821e-01	ci right 7.991515e-01	k: 1053977	n:1320000
KS ci ratio: 2.416934e-01	ci left: 1.751783e-04	ci right 2.240286e-04	k: 262	n:1320000
CDH15   1320000 perm   858 sec   (1539 perm/sec)   p_kst 1.984848e-04   p_cons 7.984674e-01   p_joint 7.643939e-04

Joint ci ratio: 1.251098e-01	ci left: 6.914410e-04	ci right 7.844396e-04	k: 980	n:1330000
Cons ci ratio: 1.707794e-03	ci left: 7.977616e-01	ci right 7.991259e-01	k: 1061931	n:1330000
KS ci ratio: 2.407796e-01	ci left: 1.752740e-04	ci right 2.239387e-04	k: 264	n:1330000
CDH15   1330000 perm   869 sec   (1531 perm/sec)   p_kst 1.984962e-04   p_cons 7.984444e-01   p_joint 7.368421e-04

Joint ci ratio: 1.248556e-01	ci left: 6.891727e-04	ci right 7.816640e-04	k: 984	n:1340000
Cons ci ratio: 1.701321e-03	ci left: 7.977810e-01	ci right 7.991401e-01	k: 1069938	n:1340000
KS ci ratio: 2.398761e-01	ci left: 1.753687e-04	ci right 2.238497e-04	k: 266	n:1340000
CDH15   1340000 perm   880 sec   (1523 perm/sec)   p_kst 1.985075e-04   p_cons 7.984612e-01   p_joint 7.343284e-04

Joint ci ratio: 1.266706e-01	ci left: 6.639789e-04	ci right 7.544816e-04	k: 956	n:1350000
Cons ci ratio: 1.695178e-03	ci left: 7.977512e-01	ci right 7.991053e-01	k: 1077879	n:1350000
KS ci ratio: 2.394283e-01	ci left: 1.747659e-04	ci right 2.229767e-04	k: 267	n:1350000
CDH15   1350000 perm   891 sec   (1516 perm/sec)   p_kst 1.977778e-04   p_cons 7.984289e-01   p_joint 7.081481e-04

Joint ci ratio: 1.112248e-01	ci left: 8.617378e-04	ci right 9.639362e-04	k: 1240	n:1360000
Cons ci ratio: 1.688997e-03	ci left: 7.977417e-01	ci right 7.990909e-01	k: 1085847	n:1360000
KS ci ratio: 2.385398e-01	ci left: 1.748634e-04	ci right 2.228957e-04	k: 269	n:1360000
CDH15   1360000 perm   902 sec   (1508 perm/sec)   p_kst 1.977941e-04   p_cons 7.984169e-01   p_joint 9.117647e-04

Joint ci ratio: 1.108237e-01	ci left: 8.618347e-04	ci right 9.636519e-04	k: 1249	n:1370000
Cons ci ratio: 1.682960e-03	ci left: 7.977177e-01	ci right 7.990621e-01	k: 1093795	n:1370000
KS ci ratio: 2.367921e-01	ci left: 1.763329e-04	ci right 2.243619e-04	k: 273	n:1370000
CDH15   1370000 perm   913 sec   (1500 perm/sec)   p_kst 1.992701e-04   p_cons 7.983905e-01   p_joint 9.116788e-04

Joint ci ratio: 1.102517e-01	ci left: 8.647494e-04	ci right 9.663495e-04	k: 1262	n:1380000
Cons ci ratio: 1.676666e-03	ci left: 7.977558e-01	ci right 7.990952e-01	k: 1101828	n:1380000
KS ci ratio: 2.363613e-01	ci left: 1.757368e-04	ci right 2.235036e-04	k: 274	n:1380000
CDH15   1380000 perm   925 sec   (1492 perm/sec)   p_kst 1.985507e-04   p_cons 7.984261e-01   p_joint 9.144928e-04

Joint ci ratio: 1.097747e-01	ci left: 8.662241e-04	ci right 9.675286e-04	k: 1273	n:1390000
Cons ci ratio: 1.670568e-03	ci left: 7.977688e-01	ci right 7.991033e-01	k: 1109827	n:1390000
KS ci ratio: 2.346606e-01	ci left: 1.771804e-04	ci right 2.249429e-04	k: 278	n:1390000
CDH15   1390000 perm   936 sec   (1485 perm/sec)   p_kst 2.000000e-04   p_cons 7.984367e-01   p_joint 9.158273e-04

Joint ci ratio: 1.094744e-01	ci left: 8.648997e-04	ci right 9.657548e-04	k: 1280	n:1400000
Cons ci ratio: 1.664726e-03	ci left: 7.977452e-01	ci right 7.990750e-01	k: 1117775	n:1400000
KS ci ratio: 2.346608e-01	ci left: 1.759148e-04	ci right 2.233361e-04	k: 278	n:1400000
CDH15   1400000 perm   948 sec   (1477 perm/sec)   p_kst 1.985714e-04   p_cons 7.984107e-01   p_joint 9.142857e-04

Joint ci ratio: 1.090496e-01	ci left: 8.656641e-04	ci right 9.661914e-04	k: 1290	n:1410000
Cons ci ratio: 1.659134e-03	ci left: 7.976850e-01	ci right 7.990102e-01	k: 1125671	n:1410000
KS ci ratio: 2.338242e-01	ci left: 1.760024e-04	ci right 2.232537e-04	k: 280	n:1410000
CDH15   1410000 perm   959 sec   (1470 perm/sec)   p_kst 1.985816e-04   p_cons 7.983482e-01   p_joint 9.148936e-04

Joint ci ratio: 1.092194e-01	ci left: 8.568276e-04	ci right 9.564937e-04	k: 1286	n:1420000
Cons ci ratio: 1.653175e-03	ci left: 7.977081e-01	ci right 7.990287e-01	k: 1133684	n:1420000
KS ci ratio: 2.334093e-01	ci left: 1.754260e-04	ci right 2.224269e-04	k: 281	n:1420000
CDH15   1420000 perm   971 sec   (1462 perm/sec)   p_kst 1.978873e-04   p_cons 7.983690e-01   p_joint 9.056338e-04

Joint ci ratio: 1.086718e-01	ci left: 8.596791e-04	ci right 9.591434e-04	k: 1299	n:1430000
Cons ci ratio: 1.647494e-03	ci left: 7.976890e-01	ci right 7.990049e-01	k: 1141637	n:1430000
KS ci ratio: 2.317712e-01	ci left: 1.768335e-04	ci right 2.238313e-04	k: 285	n:1430000
CDH15   1430000 perm   983 sec   (1454 perm/sec)   p_kst 1.993007e-04   p_cons 7.983476e-01   p_joint 9.083916e-04

Joint ci ratio: 1.085885e-01	ci left: 8.550601e-04	ci right 9.539094e-04	k: 1301	n:1440000
Cons ci ratio: 1.641564e-03	ci left: 7.977306e-01	ci right 7.990418e-01	k: 1149677	n:1440000
KS ci ratio: 2.313671e-01	ci left: 1.762596e-04	ci right 2.230116e-04	k: 286	n:1440000
CDH15   1440000 perm   995 sec   (1447 perm/sec)   p_kst 1.986111e-04   p_cons 7.983868e-01   p_joint 9.034722e-04

Joint ci ratio: 1.083393e-01	ci left: 8.531888e-04	ci right 9.515809e-04	k: 1307	n:1450000
Cons ci ratio: 1.635886e-03	ci left: 7.977343e-01	ci right 7.990410e-01	k: 1157663	n:1450000
KS ci ratio: 2.309652e-01	ci left: 1.756937e-04	ci right 2.222032e-04	k: 287	n:1450000
CDH15   1450000 perm   1007 sec   (1440 perm/sec)   p_kst 1.979310e-04   p_cons 7.983883e-01   p_joint 9.013793e-04

Joint ci ratio: 1.080095e-01	ci left: 8.526762e-04	ci right 9.506909e-04	k: 1315	n:1460000
Cons ci ratio: 1.630308e-03	ci left: 7.977298e-01	ci right 7.990320e-01	k: 1165637	n:1460000
KS ci ratio: 2.297715e-01	ci left: 1.764266e-04	ci right 2.228544e-04	k: 290	n:1460000
CDH15   1460000 perm   1019 sec   (1432 perm/sec)   p_kst 1.986301e-04   p_cons 7.983815e-01   p_joint 9.006849e-04

Joint ci ratio: 1.091362e-01	ci left: 8.290066e-04	ci right 9.253583e-04	k: 1288	n:1470000
Cons ci ratio: 1.624835e-03	ci left: 7.977158e-01	ci right 7.990137e-01	k: 1173597	n:1470000
KS ci ratio: 2.293778e-01	ci left: 1.758675e-04	ci right 2.220577e-04	k: 291	n:1470000
CDH15   1470000 perm   1031 sec   (1425 perm/sec)   p_kst 1.979592e-04   p_cons 7.983653e-01   p_joint 8.761905e-04

Joint ci ratio: 1.107831e-01	ci left: 7.984349e-04	ci right 8.927252e-04	k: 1250	n:1480000
Cons ci ratio: 1.619206e-03	ci left: 7.977439e-01	ci right 7.990373e-01	k: 1181619	n:1480000
KS ci ratio: 2.266765e-01	ci left: 1.791389e-04	ci right 2.255567e-04	k: 298	n:1480000
CDH15   1480000 perm   1044 sec   (1418 perm/sec)   p_kst 2.013514e-04   p_cons 7.983912e-01   p_joint 8.445946e-04

Joint ci ratio: 1.104745e-01	ci left: 7.976443e-04	ci right 8.915617e-04	k: 1257	n:1490000
Cons ci ratio: 1.613810e-03	ci left: 7.977368e-01	ci right 7.990258e-01	k: 1189589	n:1490000
KS ci ratio: 2.262984e-01	ci left: 1.785696e-04	ci right 2.247520e-04	k: 299	n:1490000
CDH15   1490000 perm   1056 sec   (1411 perm/sec)   p_kst 2.006711e-04   p_cons 7.983819e-01   p_joint 8.436242e-04

Joint ci ratio: 1.101685e-01	ci left: 7.968645e-04	ci right 8.904134e-04	k: 1264	n:1500000
Cons ci ratio: 1.608355e-03	ci left: 7.977524e-01	ci right 7.990371e-01	k: 1197593	n:1500000
KS ci ratio: 2.248046e-01	ci left: 1.798952e-04	ci right 2.260708e-04	k: 303	n:1500000
CDH15   1500000 perm   1068 sec   (1404 perm/sec)   p_kst 2.020000e-04   p_cons 7.983953e-01   p_joint 8.426667e-04

Joint ci ratio: 1.101253e-01	ci left: 7.922312e-04	ci right 8.851972e-04	k: 1265	n:1510000
Cons ci ratio: 1.603096e-03	ci left: 7.977393e-01	ci right 7.990198e-01	k: 1205554	n:1510000
KS ci ratio: 2.215485e-01	ci left: 1.843310e-04	ci right 2.308664e-04	k: 312	n:1510000
CDH15   1510000 perm   1081 sec   (1397 perm/sec)   p_kst 2.066225e-04   p_cons 7.983801e-01   p_joint 8.377483e-04

Joint ci ratio: 1.097790e-01	ci left: 7.921375e-04	ci right 8.847814e-04	k: 1273	n:1520000
Cons ci ratio: 1.597751e-03	ci left: 7.977541e-01	ci right 7.990303e-01	k: 1213557	n:1520000
KS ci ratio: 2.215486e-01	ci left: 1.831183e-04	ci right 2.293476e-04	k: 312	n:1520000
CDH15   1520000 perm   1093 sec   (1391 perm/sec)   p_kst 2.052632e-04   p_cons 7.983928e-01   p_joint 8.375000e-04

Joint ci ratio: 1.093932e-01	ci left: 7.926813e-04	ci right 8.850420e-04	k: 1282	n:1530000
Cons ci ratio: 1.592527e-03	ci left: 7.977549e-01	ci right 7.990270e-01	k: 1221539	n:1530000
KS ci ratio: 2.204944e-01	ci left: 1.837737e-04	ci right 2.299177e-04	k: 315	n:1530000
CDH15   1530000 perm   1105 sec   (1384 perm/sec)   p_kst 2.058824e-04   p_cons 7.983915e-01   p_joint 8.379085e-04

Joint ci ratio: 1.096504e-01	ci left: 7.837444e-04	ci right 8.752924e-04	k: 1276	n:1540000
Cons ci ratio: 1.587684e-03	ci left: 7.976888e-01	ci right 7.989569e-01	k: 1229418	n:1540000
KS ci ratio: 2.187702e-01	ci left: 1.856485e-04	ci right 2.318498e-04	k: 320	n:1540000
CDH15   1540000 perm   1118 sec   (1378 perm/sec)   p_kst 2.077922e-04   p_cons 7.983234e-01   p_joint 8.285714e-04

Joint ci ratio: 1.099527e-01	ci left: 7.742957e-04	ci right 8.650055e-04	k: 1269	n:1550000
Cons ci ratio: 1.582524e-03	ci left: 7.976971e-01	ci right 7.989611e-01	k: 1237411	n:1550000
KS ci ratio: 2.180918e-01	ci left: 1.856705e-04	ci right 2.317148e-04	k: 322	n:1550000
CDH15   1550000 perm   1130 sec   (1371 perm/sec)   p_kst 2.077419e-04   p_cons 7.983297e-01   p_joint 8.187097e-04

Joint ci ratio: 1.094368e-01	ci left: 7.768136e-04	ci right 8.673638e-04	k: 1281	n:1560000
Cons ci ratio: 1.577325e-03	ci left: 7.977234e-01	ci right 7.989832e-01	k: 1245432	n:1560000
KS ci ratio: 2.167537e-01	ci left: 1.869048e-04	ci right 2.329329e-04	k: 326	n:1560000
CDH15   1560000 perm   1143 sec   (1365 perm/sec)   p_kst 2.089744e-04   p_cons 7.983538e-01   p_joint 8.211538e-04

Joint ci ratio: 1.091393e-01	ci left: 7.762024e-04	ci right 8.664197e-04	k: 1288	n:1570000
Cons ci ratio: 1.572339e-03	ci left: 7.977161e-01	ci right 7.989720e-01	k: 1253401	n:1570000
KS ci ratio: 2.164231e-01	ci left: 1.863167e-04	ci right 2.321207e-04	k: 327	n:1570000
CDH15   1570000 perm   1156 sec   (1358 perm/sec)   p_kst 2.082803e-04   p_cons 7.983446e-01   p_joint 8.203822e-04

Joint ci ratio: 1.085929e-01	ci left: 7.792937e-04	ci right 8.693877e-04	k: 1301	n:1580000
Cons ci ratio: 1.567307e-03	ci left: 7.977279e-01	ci right 7.989798e-01	k: 1261400	n:1580000
KS ci ratio: 2.144701e-01	ci left: 1.887301e-04	ci right 2.346536e-04	k: 333	n:1580000
CDH15   1580000 perm   1169 sec   (1352 perm/sec)   p_kst 2.107595e-04   p_cons 7.983544e-01   p_joint 8.234177e-04

Joint ci ratio: 1.080135e-01	ci left: 7.829590e-04	ci right 8.729632e-04	k: 1315	n:1590000
Cons ci ratio: 1.562378e-03	ci left: 7.977283e-01	ci right 7.989763e-01	k: 1269381	n:1590000
KS ci ratio: 2.135133e-01	ci left: 1.893288e-04	ci right 2.351656e-04	k: 336	n:1590000
CDH15   1590000 perm   1182 sec   (1345 perm/sec)   p_kst 2.113208e-04   p_cons 7.983528e-01   p_joint 8.270440e-04

Joint ci ratio: 1.078908e-01	ci left: 7.798899e-04	ci right 8.694329e-04	k: 1318	n:1600000
Cons ci ratio: 1.557432e-03	ci left: 7.977418e-01	ci right 7.989858e-01	k: 1277383	n:1600000
KS ci ratio: 2.122572e-01	ci left: 1.905122e-04	ci right 2.363289e-04	k: 340	n:1600000
CDH15   1600000 perm   1195 sec   (1339 perm/sec)   p_kst 2.125000e-04   p_cons 7.983644e-01   p_joint 8.237500e-04

Joint ci ratio: 1.074436e-01	ci left: 7.816942e-04	ci right 8.710489e-04	k: 1329	n:1610000
Cons ci ratio: 1.552482e-03	ci left: 7.977658e-01	ci right 7.990058e-01	k: 1285402	n:1610000
KS ci ratio: 2.119467e-01	ci left: 1.899171e-04	ci right 2.355151e-04	k: 341	n:1610000
CDH15   1610000 perm   1208 sec   (1333 perm/sec)   p_kst 2.118012e-04   p_cons 7.983863e-01   p_joint 8.254658e-04

Joint ci ratio: 1.071219e-01	ci left: 7.816747e-04	ci right 8.707427e-04	k: 1337	n:1620000
Cons ci ratio: 1.547724e-03	ci left: 7.977591e-01	ci right 7.989954e-01	k: 1293372	n:1620000
KS ci ratio: 2.107179e-01	ci left: 1.910832e-04	ci right 2.366609e-04	k: 345	n:1620000
CDH15   1620000 perm   1221 sec   (1327 perm/sec)   p_kst 2.129630e-04   p_cons 7.983778e-01   p_joint 8.253086e-04

Joint ci ratio: 1.067635e-01	ci left: 7.822529e-04	ci right 8.710698e-04	k: 1346	n:1630000
Cons ci ratio: 1.542860e-03	ci left: 7.977839e-01	ci right 7.990163e-01	k: 1301393	n:1630000
KS ci ratio: 2.101116e-01	ci left: 1.910733e-04	ci right 2.365005e-04	k: 347	n:1630000
CDH15   1630000 perm   1234 sec   (1321 perm/sec)   p_kst 2.128834e-04   p_cons 7.984006e-01   p_joint 8.257669e-04

Joint ci ratio: 1.077693e-01	ci left: 7.626477e-04	ci right 8.501062e-04	k: 1321	n:1640000
Cons ci ratio: 1.538190e-03	ci left: 7.977772e-01	ci right 7.990059e-01	k: 1309363	n:1640000
KS ci ratio: 2.092117e-01	ci left: 1.916414e-04	ci right 2.369836e-04	k: 350	n:1640000
CDH15   1640000 perm   1247 sec   (1315 perm/sec)   p_kst 2.134146e-04   p_cons 7.983921e-01   p_joint 8.054878e-04

Joint ci ratio: 1.072834e-01	ci left: 7.651028e-04	ci right 8.524222e-04	k: 1333	n:1650000
Cons ci ratio: 1.533614e-03	ci left: 7.977597e-01	ci right 7.989847e-01	k: 1317315	n:1650000
KS ci ratio: 2.086182e-01	ci left: 1.916286e-04	ci right 2.368228e-04	k: 352	n:1650000
CDH15   1650000 perm   1261 sec   (1309 perm/sec)   p_kst 2.133333e-04   p_cons 7.983727e-01   p_joint 8.078788e-04

Joint ci ratio: 9.604870e-02	ci left: 9.542539e-04	ci right 1.051115e-03	k: 1663	n:1660000
Cons ci ratio: 1.528909e-03	ci left: 7.977780e-01	ci right 7.989993e-01	k: 1325326	n:1660000
KS ci ratio: 2.080297e-01	ci left: 1.916162e-04	ci right 2.366637e-04	k: 354	n:1660000
CDH15   1660000 perm   1274 sec   (1303 perm/sec)   p_kst 2.132530e-04   p_cons 7.983892e-01   p_joint 1.001807e-03

Joint ci ratio: 9.599126e-02	ci left: 9.497085e-04	ci right 1.046047e-03	k: 1665	n:1670000
Cons ci ratio: 1.524410e-03	ci left: 7.977619e-01	ci right 7.989796e-01	k: 1333280	n:1670000
KS ci ratio: 2.080298e-01	ci left: 1.904688e-04	ci right 2.352466e-04	k: 354	n:1670000
CDH15   1670000 perm   1288 sec   (1297 perm/sec)   p_kst 2.119760e-04   p_cons 7.983713e-01   p_joint 9.970060e-04

Joint ci ratio: 9.587640e-02	ci left: 9.463792e-04	ci right 1.042259e-03	k: 1669	n:1680000
Cons ci ratio: 1.519834e-03	ci left: 7.977705e-01	ci right 7.989844e-01	k: 1341275	n:1680000
KS ci ratio: 2.080300e-01	ci left: 1.893351e-04	ci right 2.338463e-04	k: 354	n:1680000
CDH15   1680000 perm   1301 sec   (1291 perm/sec)   p_kst 2.107143e-04   p_cons 7.983780e-01   p_joint 9.934524e-04

Joint ci ratio: 9.564764e-02	ci left: 9.453997e-04	ci right 1.040939e-03	k: 1677	n:1690000
Cons ci ratio: 1.515269e-03	ci left: 7.977854e-01	ci right 7.989958e-01	k: 1349281	n:1690000
KS ci ratio: 2.077376e-01	ci left: 1.887756e-04	ci right 2.330851e-04	k: 355	n:1690000
CDH15   1690000 perm   1315 sec   (1285 perm/sec)   p_kst 2.100592e-04   p_cons 7.983911e-01   p_joint 9.923077e-04

Joint ci ratio: 9.642761e-02	ci left: 9.243371e-04	ci right 1.018553e-03	k: 1650	n:1700000
Cons ci ratio: 1.510585e-03	ci left: 7.978344e-01	ci right 7.990411e-01	k: 1357345	n:1700000
KS ci ratio: 2.074466e-01	ci left: 1.882228e-04	ci right 2.323328e-04	k: 356	n:1700000
CDH15   1700000 perm   1328 sec   (1280 perm/sec)   p_kst 2.094118e-04   p_cons 7.984382e-01   p_joint 9.705882e-04

Joint ci ratio: 9.740721e-02	ci left: 9.001006e-04	ci right 9.928310e-04	k: 1617	n:1710000
Cons ci ratio: 1.506045e-03	ci left: 7.978611e-01	ci right 7.990642e-01	k: 1365372	n:1710000
KS ci ratio: 2.068679e-01	ci left: 1.882310e-04	ci right 2.322043e-04	k: 358	n:1710000
CDH15   1710000 perm   1342 sec   (1274 perm/sec)   p_kst 2.093567e-04   p_cons 7.984632e-01   p_joint 9.456140e-04

Joint ci ratio: 9.722721e-02	ci left: 8.982709e-04	ci right 9.906320e-04	k: 1623	n:1720000
Cons ci ratio: 1.501781e-03	ci left: 7.978369e-01	ci right 7.990365e-01	k: 1373312	n:1720000
KS ci ratio: 2.062941e-01	ci left: 1.882393e-04	ci right 2.320771e-04	k: 360	n:1720000
CDH15   1720000 perm   1356 sec   (1269 perm/sec)   p_kst 2.093023e-04   p_cons 7.984372e-01   p_joint 9.436047e-04

Joint ci ratio: 9.695892e-02	ci left: 8.981546e-04	ci right 9.902344e-04	k: 1632	n:1730000
Cons ci ratio: 1.497377e-03	ci left: 7.978511e-01	ci right 7.990473e-01	k: 1381318	n:1730000
KS ci ratio: 2.054422e-01	ci left: 1.887960e-04	ci right 2.325590e-04	k: 363	n:1730000
CDH15   1730000 perm   1369 sec   (1263 perm/sec)   p_kst 2.098266e-04   p_cons 7.984497e-01   p_joint 9.433526e-04

Joint ci ratio: 9.651650e-02	ci left: 9.014050e-04	ci right 9.933725e-04	k: 1647	n:1740000
Cons ci ratio: 1.492880e-03	ci left: 7.978934e-01	ci right 7.990860e-01	k: 1389373	n:1740000
KS ci ratio: 2.040454e-01	ci left: 1.904372e-04	ci right 2.342431e-04	k: 368	n:1740000
CDH15   1740000 perm   1383 sec   (1258 perm/sec)   p_kst 2.114943e-04   p_cons 7.984902e-01   p_joint 9.465517e-04

Joint ci ratio: 9.628313e-02	ci left: 9.007153e-04	ci right 9.923778e-04	k: 1655	n:1750000
Cons ci ratio: 1.488431e-03	ci left: 7.979335e-01	ci right 7.991226e-01	k: 1397425	n:1750000
KS ci ratio: 2.034946e-01	ci left: 1.904335e-04	ci right 2.341057e-04	k: 370	n:1750000
CDH15   1750000 perm   1398 sec   (1252 perm/sec)   p_kst 2.114286e-04   p_cons 7.985286e-01   p_joint 9.457143e-04

Joint ci ratio: 9.639999e-02	ci left: 8.933794e-04	ci right 9.844120e-04	k: 1651	n:1760000
Cons ci ratio: 1.484289e-03	ci left: 7.979152e-01	ci right 7.991009e-01	k: 1405375	n:1760000
KS ci ratio: 2.029483e-01	ci left: 1.904300e-04	ci right 2.339697e-04	k: 372	n:1760000
CDH15   1760000 perm   1412 sec   (1247 perm/sec)   p_kst 2.113636e-04   p_cons 7.985085e-01   p_joint 9.380682e-04

Joint ci ratio: 9.602282e-02	ci left: 8.955001e-04	ci right 9.863716e-04	k: 1664	n:1770000
Cons ci ratio: 1.480049e-03	ci left: 7.979258e-01	ci right 7.991082e-01	k: 1413376	n:1770000
KS ci ratio: 2.018687e-01	ci left: 1.914995e-04	ci right 2.350221e-04	k: 376	n:1770000
CDH15   1770000 perm   1426 sec   (1241 perm/sec)   p_kst 2.124294e-04   p_cons 7.985175e-01   p_joint 9.401130e-04

Joint ci ratio: 9.565004e-02	ci left: 8.975975e-04	ci right 9.883085e-04	k: 1677	n:1780000
Cons ci ratio: 1.475770e-03	ci left: 7.979527e-01	ci right 7.991317e-01	k: 1421406	n:1780000
KS ci ratio: 2.008061e-01	ci left: 1.925576e-04	ci right 2.360620e-04	k: 380	n:1780000
CDH15   1780000 perm   1440 sec   (1236 perm/sec)   p_kst 2.134831e-04   p_cons 7.985427e-01   p_joint 9.421348e-04

Joint ci ratio: 9.516897e-02	ci left: 9.018537e-04	ci right 9.925108e-04	k: 1694	n:1790000
Cons ci ratio: 1.471633e-03	ci left: 7.979564e-01	ci right 7.991321e-01	k: 1429395	n:1790000
KS ci ratio: 2.000201e-01	ci left: 1.930738e-04	ci right 2.365032e-04	k: 383	n:1790000
CDH15   1790000 perm   1454 sec   (1231 perm/sec)   p_kst 2.139665e-04   p_cons 7.985447e-01   p_joint 9.463687e-04

Joint ci ratio: 9.497313e-02	ci left: 9.006398e-04	ci right 9.909782e-04	k: 1701	n:1800000
Cons ci ratio: 1.467667e-03	ci left: 7.979299e-01	ci right 7.991024e-01	k: 1437330	n:1800000
KS ci ratio: 1.997603e-01	ci left: 1.925289e-04	ci right 2.357726e-04	k: 384	n:1800000
CDH15   1800000 perm   1469 sec   (1225 perm/sec)   p_kst 2.133333e-04   p_cons 7.985167e-01   p_joint 9.450000e-04

Joint ci ratio: 9.461240e-02	ci left: 9.026760e-04	ci right 9.928557e-04	k: 1714	n:1810000
Cons ci ratio: 1.463663e-03	ci left: 7.979193e-01	ci right 7.990886e-01	k: 1445293	n:1810000
KS ci ratio: 1.982215e-01	ci left: 1.946150e-04	ci right 2.379498e-04	k: 390	n:1810000
CDH15   1810000 perm   1484 sec   (1220 perm/sec)   p_kst 2.154696e-04   p_cons 7.985044e-01   p_joint 9.469613e-04

Joint ci ratio: 9.425574e-02	ci left: 9.046905e-04	ci right 9.947119e-04	k: 1727	n:1820000
Cons ci ratio: 1.459850e-03	ci left: 7.978736e-01	ci right 7.990397e-01	k: 1453192	n:1820000
KS ci ratio: 1.974653e-01	ci left: 1.951124e-04	ci right 2.383723e-04	k: 393	n:1820000
CDH15   1820000 perm   1498 sec   (1215 perm/sec)   p_kst 2.159341e-04   p_cons 7.984571e-01   p_joint 9.489011e-04

Joint ci ratio: 9.436537e-02	ci left: 8.976124e-04	ci right 9.870392e-04	k: 1723	n:1830000
Cons ci ratio: 1.455910e-03	ci left: 7.978634e-01	ci right 7.990264e-01	k: 1461155	n:1830000
KS ci ratio: 1.967178e-01	ci left: 1.956046e-04	ci right 2.387899e-04	k: 396	n:1830000
CDH15   1830000 perm   1513 sec   (1210 perm/sec)   p_kst 2.163934e-04   p_cons 7.984454e-01   p_joint 9.415301e-04

Joint ci ratio: 9.401149e-02	ci left: 8.996329e-04	ci right 9.889064e-04	k: 1736	n:1840000
Cons ci ratio: 1.451797e-03	ci left: 7.978985e-01	ci right 7.990582e-01	k: 1469201	n:1840000
KS ci ratio: 1.962241e-01	ci left: 1.955750e-04	ci right 2.386325e-04	k: 398	n:1840000
CDH15   1840000 perm   1527 sec   (1205 perm/sec)   p_kst 2.163043e-04   p_cons 7.984788e-01   p_joint 9.434783e-04

Joint ci ratio: 9.358131e-02	ci left: 9.032159e-04	ci right 9.924123e-04	k: 1752	n:1850000
Cons ci ratio: 1.447923e-03	ci left: 7.978877e-01	ci right 7.990443e-01	k: 1477163	n:1850000
KS ci ratio: 1.954905e-01	ci left: 1.960600e-04	ci right 2.390436e-04	k: 401	n:1850000
CDH15   1850000 perm   1542 sec   (1200 perm/sec)   p_kst 2.167568e-04   p_cons 7.984665e-01   p_joint 9.470270e-04

Joint ci ratio: 9.336854e-02	ci left: 9.025604e-04	ci right 9.914783e-04	k: 1760	n:1860000
Cons ci ratio: 1.443984e-03	ci left: 7.978986e-01	ci right 7.990521e-01	k: 1485165	n:1860000
KS ci ratio: 1.945250e-01	ci left: 1.970515e-04	ci right 2.400138e-04	k: 405	n:1860000
CDH15   1860000 perm   1557 sec   (1195 perm/sec)   p_kst 2.177419e-04   p_cons 7.984758e-01   p_joint 9.462366e-04

Joint ci ratio: 9.310455e-02	ci left: 9.029568e-04	ci right 9.916486e-04	k: 1770	n:1870000
Cons ci ratio: 1.440019e-03	ci left: 7.979222e-01	ci right 7.990726e-01	k: 1493191	n:1870000
KS ci ratio: 1.938103e-01	ci left: 1.975240e-04	ci right 2.404125e-04	k: 408	n:1870000
CDH15   1870000 perm   1571 sec   (1190 perm/sec)   p_kst 2.181818e-04   p_cons 7.984979e-01   p_joint 9.465241e-04

Joint ci ratio: 9.444884e-02	ci left: 8.721811e-04	ci right 9.591553e-04	k: 1720	n:1880000
Cons ci ratio: 1.436177e-03	ci left: 7.979254e-01	ci right 7.990727e-01	k: 1501179	n:1880000
KS ci ratio: 1.931033e-01	ci left: 1.979918e-04	ci right 2.408066e-04	k: 411	n:1880000
CDH15   1880000 perm   1587 sec   (1185 perm/sec)   p_kst 2.186170e-04   p_cons 7.984995e-01   p_joint 9.148936e-04

Joint ci ratio: 9.398559e-02	ci left: 8.763493e-04	ci right 9.632869e-04	k: 1737	n:1890000
Cons ci ratio: 1.432250e-03	ci left: 7.979544e-01	ci right 7.990986e-01	k: 1509216	n:1890000
KS ci ratio: 1.919420e-01	ci left: 1.994622e-04	ci right 2.423053e-04	k: 416	n:1890000
CDH15   1890000 perm   1602 sec   (1180 perm/sec)   p_kst 2.201058e-04   p_cons 7.985270e-01   p_joint 9.190476e-04

Joint ci ratio: 9.423034e-02	ci left: 8.671113e-04	ci right 9.533689e-04	k: 1728	n:1900000
Cons ci ratio: 1.428262e-03	ci left: 7.980043e-01	ci right 7.991453e-01	k: 1517293	n:1900000
KS ci ratio: 1.917123e-01	ci left: 1.989135e-04	ci right 2.415816e-04	k: 417	n:1900000
CDH15   1900000 perm   1617 sec   (1175 perm/sec)   p_kst 2.194737e-04   p_cons 7.985753e-01   p_joint 9.094737e-04

Joint ci ratio: 9.409449e-02	ci left: 8.651276e-04	ci right 9.510569e-04	k: 1733	n:1910000
Cons ci ratio: 1.424455e-03	ci left: 7.980200e-01	ci right 7.991581e-01	k: 1525306	n:1910000
KS ci ratio: 1.914835e-01	ci left: 1.983705e-04	ci right 2.408654e-04	k: 418	n:1910000
CDH15   1910000 perm   1633 sec   (1170 perm/sec)   p_kst 2.188482e-04   p_cons 7.985895e-01   p_joint 9.073298e-04

Joint ci ratio: 9.379740e-02	ci left: 8.662163e-04	ci right 9.519672e-04	k: 1744	n:1920000
Cons ci ratio: 1.420959e-03	ci left: 7.979721e-01	ci right 7.991072e-01	k: 1533197	n:1920000
KS ci ratio: 1.912554e-01	ci left: 1.978332e-04	ci right 2.401567e-04	k: 419	n:1920000
CDH15   1920000 perm   1648 sec   (1165 perm/sec)   p_kst 2.182292e-04   p_cons 7.985401e-01   p_joint 9.083333e-04

Joint ci ratio: 9.358315e-02	ci left: 8.657761e-04	ci right 9.512769e-04	k: 1752	n:1930000
Cons ci ratio: 1.417477e-03	ci left: 7.979272e-01	ci right 7.990595e-01	k: 1541093	n:1930000
KS ci ratio: 1.908017e-01	ci left: 1.977948e-04	ci right 2.399981e-04	k: 421	n:1930000
CDH15   1930000 perm   1663 sec   (1161 perm/sec)   p_kst 2.181347e-04   p_cons 7.984938e-01   p_joint 9.077720e-04

Joint ci ratio: 9.329087e-02	ci left: 8.668510e-04	ci right 9.521760e-04	k: 1763	n:1940000
Cons ci ratio: 1.413850e-03	ci left: 7.979214e-01	ci right 7.990509e-01	k: 1549064	n:1940000
KS ci ratio: 1.905761e-01	ci left: 1.972661e-04	ci right 2.393011e-04	k: 422	n:1940000
CDH15   1940000 perm   1678 sec   (1156 perm/sec)   p_kst 2.175258e-04   p_cons 7.984866e-01   p_joint 9.087629e-04

Joint ci ratio: 9.305379e-02	ci left: 8.669134e-04	ci right 9.520159e-04	k: 1772	n:1950000
Cons ci ratio: 1.410130e-03	ci left: 7.979435e-01	ci right 7.990700e-01	k: 1557089	n:1950000
KS ci ratio: 1.905762e-01	ci left: 1.962545e-04	ci right 2.380739e-04	k: 422	n:1950000
CDH15   1950000 perm   1694 sec   (1151 perm/sec)   p_kst 2.164103e-04   p_cons 7.985072e-01   p_joint 9.087179e-04

Joint ci ratio: 9.279245e-02	ci left: 8.674739e-04	ci right 9.523792e-04	k: 1782	n:1960000
Cons ci ratio: 1.406448e-03	ci left: 7.979633e-01	ci right 7.990869e-01	k: 1565110	n:1960000
KS ci ratio: 1.903514e-01	ci left: 1.957391e-04	ci right 2.373938e-04	k: 423	n:1960000
CDH15   1960000 perm   1709 sec   (1147 perm/sec)   p_kst 2.158163e-04   p_cons 7.985255e-01   p_joint 9.091837e-04

Joint ci ratio: 9.261089e-02	ci left: 8.665414e-04	ci right 9.511805e-04	k: 1789	n:1970000
Cons ci ratio: 1.402928e-03	ci left: 7.979524e-01	ci right 7.990731e-01	k: 1573071	n:1970000
KS ci ratio: 1.901274e-01	ci left: 1.952289e-04	ci right 2.367205e-04	k: 424	n:1970000
CDH15   1970000 perm   1725 sec   (1142 perm/sec)   p_kst 2.152284e-04   p_cons 7.985132e-01   p_joint 9.081218e-04

Joint ci ratio: 9.230194e-02	ci left: 8.680854e-04	ci right 9.525772e-04	k: 1801	n:1980000
Cons ci ratio: 1.399335e-03	ci left: 7.979644e-01	ci right 7.990822e-01	k: 1581077	n:1980000
KS ci ratio: 1.894598e-01	ci left: 1.956861e-04	ci right 2.371120e-04	k: 427	n:1980000
CDH15   1980000 perm   1740 sec   (1138 perm/sec)   p_kst 2.156566e-04   p_cons 7.985237e-01   p_joint 9.095960e-04

Joint ci ratio: 9.217425e-02	ci left: 8.661777e-04	ci right 9.503610e-04	k: 1806	n:1990000
Cons ci ratio: 1.395704e-03	ci left: 7.979913e-01	ci right 7.991063e-01	k: 1589113	n:1990000
KS ci ratio: 1.892389e-01	ci left: 1.951814e-04	ci right 2.364468e-04	k: 428	n:1990000
CDH15   1990000 perm   1756 sec   (1133 perm/sec)   p_kst 2.150754e-04   p_cons 7.985492e-01   p_joint 9.075377e-04

Joint ci ratio: 9.202167e-02	ci left: 8.647777e-04	ci right 9.486783e-04	k: 1812	n:2000000
Cons ci ratio: 1.392122e-03	ci left: 7.980130e-01	ci right 7.991252e-01	k: 1597139	n:2000000
KS ci ratio: 1.890188e-01	ci left: 1.946818e-04	ci right 2.357882e-04	k: 429	n:2000000
CDH15   2000000 perm   1772 sec   (1129 perm/sec)   p_kst 2.145000e-04   p_cons 7.985695e-01   p_joint 9.060000e-04

Joint ci ratio: 9.189514e-02	ci left: 8.629057e-04	ci right 9.465033e-04	k: 1817	n:2010000
Cons ci ratio: 1.388699e-03	ci left: 7.980041e-01	ci right 7.991135e-01	k: 1605104	n:2010000
KS ci ratio: 1.887995e-01	ci left: 1.941872e-04	ci right 2.351361e-04	k: 430	n:2010000
CDH15   2010000 perm   1788 sec   (1124 perm/sec)   p_kst 2.139303e-04   p_cons 7.985592e-01   p_joint 9.039801e-04

Joint ci ratio: 9.263783e-02	ci left: 8.446083e-04	ci right 9.271304e-04	k: 1788	n:2020000
Cons ci ratio: 1.385295e-03	ci left: 7.979967e-01	ci right 7.991034e-01	k: 1613072	n:2020000
KS ci ratio: 1.885809e-01	ci left: 1.936976e-04	ci right 2.344905e-04	k: 431	n:2020000
CDH15   2020000 perm   1804 sec   (1120 perm/sec)   p_kst 2.133663e-04   p_cons 7.985505e-01   p_joint 8.851485e-04

Joint ci ratio: 9.237998e-02	ci left: 8.452598e-04	ci right 9.276033e-04	k: 1798	n:2030000
Cons ci ratio: 1.381895e-03	ci left: 7.979944e-01	ci right 7.990984e-01	k: 1621050	n:2030000
KS ci ratio: 1.881459e-01	ci left: 1.936822e-04	ci right 2.343670e-04	k: 433	n:2030000
CDH15   2030000 perm   1820 sec   (1115 perm/sec)   p_kst 2.133005e-04   p_cons 7.985468e-01   p_joint 8.857143e-04

Joint ci ratio: 9.212426e-02	ci left: 8.459053e-04	ci right 9.280712e-04	k: 1808	n:2040000
Cons ci ratio: 1.378564e-03	ci left: 7.979818e-01	ci right 7.990831e-01	k: 1629007	n:2040000
KS ci ratio: 1.877138e-01	ci left: 1.936670e-04	ci right 2.342446e-04	k: 435	n:2040000
CDH15   2040000 perm   1837 sec   (1111 perm/sec)   p_kst 2.132353e-04   p_cons 7.985328e-01   p_joint 8.862745e-04

Joint ci ratio: 9.202269e-02	ci left: 8.436852e-04	ci right 9.255403e-04	k: 1812	n:2050000
Cons ci ratio: 1.375269e-03	ci left: 7.979664e-01	ci right 7.990650e-01	k: 1636958	n:2050000
KS ci ratio: 1.874990e-01	ci left: 1.931872e-04	ci right 2.336126e-04	k: 436	n:2050000
CDH15   2050000 perm   1853 sec   (1106 perm/sec)   p_kst 2.126829e-04   p_cons 7.985161e-01   p_joint 8.839024e-04

Joint ci ratio: 9.164422e-02	ci left: 8.467040e-04	ci right 9.284960e-04	k: 1827	n:2060000
Cons ci ratio: 1.372055e-03	ci left: 7.979375e-01	ci right 7.990335e-01	k: 1644881	n:2060000
KS ci ratio: 1.866466e-01	ci left: 1.941002e-04	ci right 2.345112e-04	k: 440	n:2060000
CDH15   2060000 perm   1869 sec   (1102 perm/sec)   p_kst 2.135922e-04   p_cons 7.984859e-01   p_joint 8.868932e-04

Joint ci ratio: 9.144436e-02	ci left: 8.463899e-04	ci right 9.279637e-04	k: 1835	n:2070000
Cons ci ratio: 1.368708e-03	ci left: 7.979457e-01	ci right 7.990390e-01	k: 1652880	n:2070000
KS ci ratio: 1.864354e-01	ci left: 1.936231e-04	ci right 2.338839e-04	k: 441	n:2070000
CDH15   2070000 perm   1885 sec   (1098 perm/sec)   p_kst 2.130435e-04   p_cons 7.984928e-01   p_joint 8.864734e-04

Joint ci ratio: 9.117161e-02	ci left: 8.474884e-04	ci right 9.289115e-04	k: 1846	n:2080000
Cons ci ratio: 1.365379e-03	ci left: 7.979552e-01	ci right 7.990459e-01	k: 1660882	n:2080000
KS ci ratio: 1.858059e-01	ci left: 1.940673e-04	ci right 2.342689e-04	k: 444	n:2080000
CDH15   2080000 perm   1902 sec   (1094 perm/sec)   p_kst 2.134615e-04   p_cons 7.985010e-01   p_joint 8.875000e-04

Joint ci ratio: 9.112243e-02	ci left: 8.443685e-04	ci right 9.254458e-04	k: 1848	n:2090000
Cons ci ratio: 1.361965e-03	ci left: 7.979905e-01	ci right 7.990785e-01	k: 1668938	n:2090000
KS ci ratio: 1.849763e-01	ci left: 1.949638e-04	ci right 2.351506e-04	k: 448	n:2090000
CDH15   2090000 perm   1918 sec   (1089 perm/sec)   p_kst 2.143541e-04   p_cons 7.985349e-01   p_joint 8.842105e-04

Joint ci ratio: 9.087699e-02	ci left: 8.450013e-04	ci right 9.259091e-04	k: 1858	n:2100000
Cons ci ratio: 1.358741e-03	ci left: 7.979864e-01	ci right 7.990718e-01	k: 1676912	n:2100000
KS ci ratio: 1.843614e-01	ci left: 1.953979e-04	ci right 2.355253e-04	k: 451	n:2100000
CDH15   2100000 perm   1935 sec   (1085 perm/sec)   p_kst 2.147619e-04   p_cons 7.985295e-01   p_joint 8.847619e-04

Joint ci ratio: 9.053661e-02	ci left: 8.474811e-04	ci right 9.283064e-04	k: 1872	n:2110000
Cons ci ratio: 1.355608e-03	ci left: 7.979662e-01	ci right 7.990491e-01	k: 1684852	n:2110000
KS ci ratio: 1.839549e-01	ci left: 1.953761e-04	ci right 2.354006e-04	k: 453	n:2110000
CDH15   2110000 perm   1951 sec   (1081 perm/sec)   p_kst 2.146919e-04   p_cons 7.985081e-01   p_joint 8.872038e-04

Joint ci ratio: 6.927666e-02	ci left: 1.455767e-03	ci right 1.560696e-03	k: 3196	n:2120000
Cons ci ratio: 1.352401e-03	ci left: 7.979688e-01	ci right 7.990492e-01	k: 1692840	n:2120000
KS ci ratio: 1.742444e-01	ci left: 2.178842e-04	ci right 2.599159e-04	k: 505	n:2120000
CDH15   2120000 perm   1968 sec   (1077 perm/sec)   p_kst 2.382075e-04   p_cons 7.985094e-01   p_joint 1.507547e-03

Joint ci ratio: 6.910394e-02	ci left: 1.456314e-03	ci right 1.561011e-03	k: 3212	n:2130000
Cons ci ratio: 1.349343e-03	ci left: 7.979414e-01	ci right 7.990193e-01	k: 1700764	n:2130000
KS ci ratio: 1.737301e-01	ci left: 2.182084e-04	ci right 2.601654e-04	k: 508	n:2130000
CDH15   2130000 perm   1985 sec   (1073 perm/sec)   p_kst 2.384977e-04   p_cons 7.984808e-01   p_joint 1.507981e-03

Joint ci ratio: 6.881521e-02	ci left: 1.461909e-03	ci right 1.566551e-03	k: 3239	n:2140000
Cons ci ratio: 1.346106e-03	ci left: 7.979619e-01	ci right 7.990373e-01	k: 1708790	n:2140000
KS ci ratio: 1.737302e-01	ci left: 2.171887e-04	ci right 2.589496e-04	k: 508	n:2140000
CDH15   2140000 perm   2001 sec   (1069 perm/sec)   p_kst 2.373832e-04   p_cons 7.985000e-01   p_joint 1.513551e-03

Joint ci ratio: 6.858265e-02	ci left: 1.465166e-03	ci right 1.569673e-03	k: 3261	n:2150000
Cons ci ratio: 1.343011e-03	ci left: 7.979539e-01	ci right 7.990267e-01	k: 1716755	n:2150000
KS ci ratio: 1.730515e-01	ci left: 2.179583e-04	ci right 2.596863e-04	k: 512	n:2150000
CDH15   2150000 perm   2018 sec   (1065 perm/sec)   p_kst 2.381395e-04   p_cons 7.984907e-01   p_joint 1.516744e-03

Joint ci ratio: 6.840461e-02	ci left: 1.466118e-03	ci right 1.570411e-03	k: 3278	n:2160000
Cons ci ratio: 1.339975e-03	ci left: 7.979366e-01	ci right 7.990070e-01	k: 1724700	n:2160000
KS ci ratio: 1.728832e-01	ci left: 2.173921e-04	ci right 2.589671e-04	k: 513	n:2160000
CDH15   2160000 perm   2035 sec   (1061 perm/sec)   p_kst 2.375000e-04   p_cons 7.984722e-01   p_joint 1.517593e-03

Joint ci ratio: 6.823831e-02	ci left: 1.466609e-03	ci right 1.570673e-03	k: 3294	n:2170000
Cons ci ratio: 1.336851e-03	ci left: 7.979458e-01	ci right 7.990137e-01	k: 1732702	n:2170000
KS ci ratio: 1.723808e-01	ci left: 2.177131e-04	ci right 2.592158e-04	k: 516	n:2170000
CDH15   2170000 perm   2052 sec   (1058 perm/sec)   p_kst 2.377880e-04   p_cons 7.984802e-01   p_joint 1.517972e-03

Joint ci ratio: 6.807322e-02	ci left: 1.467096e-03	ci right 1.570933e-03	k: 3310	n:2180000
Cons ci ratio: 1.333834e-03	ci left: 7.979343e-01	ci right 7.989998e-01	k: 1740659	n:2180000
KS ci ratio: 1.720484e-01	ci left: 2.175923e-04	ci right 2.589837e-04	k: 518	n:2180000
CDH15   2180000 perm   2069 sec   (1054 perm/sec)   p_kst 2.376147e-04   p_cons 7.984674e-01   p_joint 1.518349e-03

Joint ci ratio: 6.791955e-02	ci left: 1.467130e-03	ci right 1.570725e-03	k: 3325	n:2190000
Cons ci ratio: 1.330800e-03	ci left: 7.979320e-01	ci right 7.989950e-01	k: 1748636	n:2190000
KS ci ratio: 1.718829e-01	ci left: 2.170357e-04	ci right 2.582774e-04	k: 519	n:2190000
CDH15   2190000 perm   2086 sec   (1050 perm/sec)   p_kst 2.369863e-04   p_cons 7.984639e-01   p_joint 1.518265e-03

Joint ci ratio: 6.777707e-02	ci left: 1.466717e-03	ci right 1.570057e-03	k: 3339	n:2200000
Cons ci ratio: 1.327833e-03	ci left: 7.979184e-01	ci right 7.989790e-01	k: 1756588	n:2200000
KS ci ratio: 1.710624e-01	ci left: 2.182244e-04	ci right 2.594736e-04	k: 524	n:2200000
CDH15   2200000 perm   2103 sec   (1046 perm/sec)   p_kst 2.381818e-04   p_cons 7.984491e-01   p_joint 1.517727e-03

Joint ci ratio: 6.844761e-02	ci left: 1.431168e-03	ci right 1.533041e-03	k: 3274	n:2210000
Cons ci ratio: 1.324786e-03	ci left: 7.979293e-01	ci right 7.989875e-01	k: 1764594	n:2210000
KS ci ratio: 1.705757e-01	ci left: 2.185364e-04	ci right 2.597149e-04	k: 527	n:2210000
CDH15   2210000 perm   2121 sec   (1042 perm/sec)   p_kst 2.384615e-04   p_cons 7.984588e-01   p_joint 1.481448e-03

Joint ci ratio: 6.872157e-02	ci left: 1.413210e-03	ci right 1.514223e-03	k: 3248	n:2220000
Cons ci ratio: 1.321846e-03	ci left: 7.979190e-01	ci right 7.989748e-01	k: 1772553	n:2220000
KS ci ratio: 1.699332e-01	ci left: 2.192770e-04	ci right 2.604235e-04	k: 531	n:2220000
CDH15   2220000 perm   2138 sec   (1038 perm/sec)   p_kst 2.391892e-04   p_cons 7.984473e-01   p_joint 1.463063e-03

Joint ci ratio: 6.861613e-02	ci left: 1.411280e-03	ci right 1.511995e-03	k: 3258	n:2230000
Cons ci ratio: 1.318990e-03	ci left: 7.978930e-01	ci right 7.989466e-01	k: 1780477	n:2230000
KS ci ratio: 1.697737e-01	ci left: 2.187230e-04	ci right 2.597232e-04	k: 532	n:2230000
CDH15   2230000 perm   2156 sec   (1034 perm/sec)   p_kst 2.385650e-04   p_cons 7.984202e-01   p_joint 1.460987e-03

Joint ci ratio: 6.849019e-02	ci left: 1.410245e-03	ci right 1.510694e-03	k: 3270	n:2240000
Cons ci ratio: 1.315930e-03	ci left: 7.979218e-01	ci right 7.989729e-01	k: 1788523	n:2240000
KS ci ratio: 1.694561e-01	ci left: 2.186016e-04	ci right 2.594944e-04	k: 534	n:2240000
CDH15   2240000 perm   2173 sec   (1031 perm/sec)   p_kst 2.383929e-04   p_cons 7.984478e-01   p_joint 1.459821e-03

Joint ci ratio: 6.830247e-02	ci left: 1.411841e-03	ci right 1.512116e-03	k: 3288	n:2250000
Cons ci ratio: 1.312999e-03	ci left: 7.979237e-01	ci right 7.989725e-01	k: 1796509	n:2250000
KS ci ratio: 1.688261e-01	ci left: 2.193325e-04	ci right 2.601941e-04	k: 538	n:2250000
CDH15   2250000 perm   2191 sec   (1027 perm/sec)   p_kst 2.391111e-04   p_cons 7.984484e-01   p_joint 1.461333e-03

Joint ci ratio: 6.813691e-02	ci left: 1.412553e-03	ci right 1.512626e-03	k: 3304	n:2260000
Cons ci ratio: 1.310132e-03	ci left: 7.979149e-01	ci right 7.989614e-01	k: 1804471	n:2260000
KS ci ratio: 1.682031e-01	ci left: 2.200573e-04	ci right 2.608873e-04	k: 542	n:2260000
CDH15   2260000 perm   2209 sec   (1023 perm/sec)   p_kst 2.398230e-04   p_cons 7.984385e-01   p_joint 1.461947e-03

Joint ci ratio: 6.896758e-02	ci left: 1.372124e-03	ci right 1.470565e-03	k: 3225	n:2270000
Cons ci ratio: 1.307165e-03	ci left: 7.979353e-01	ci right 7.989794e-01	k: 1812499	n:2270000
KS ci ratio: 1.678942e-01	ci left: 2.199319e-04	ci right 2.606561e-04	k: 544	n:2270000
CDH15   2270000 perm   2226 sec   (1020 perm/sec)   p_kst 2.396476e-04   p_cons 7.984577e-01   p_joint 1.420705e-03

Joint ci ratio: 6.885034e-02	ci left: 1.370847e-03	ci right 1.469023e-03	k: 3236	n:2280000
Cons ci ratio: 1.304309e-03	ci left: 7.979331e-01	ci right 7.989749e-01	k: 1820476	n:2280000
KS ci ratio: 1.678942e-01	ci left: 2.189673e-04	ci right 2.595128e-04	k: 544	n:2280000
CDH15   2280000 perm   2244 sec   (1016 perm/sec)   p_kst 2.385965e-04   p_cons 7.984544e-01   p_joint 1.419298e-03

Joint ci ratio: 6.869136e-02	ci left: 1.371298e-03	ci right 1.469271e-03	k: 3251	n:2290000
Cons ci ratio: 1.301531e-03	ci left: 7.979161e-01	ci right 7.989557e-01	k: 1828419	n:2290000
KS ci ratio: 1.672814e-01	ci left: 2.196845e-04	ci right 2.601995e-04	k: 548	n:2290000
CDH15   2290000 perm   2262 sec   (1012 perm/sec)   p_kst 2.393013e-04   p_cons 7.984362e-01   p_joint 1.419651e-03

Joint ci ratio: 6.851248e-02	ci left: 1.372601e-03	ci right 1.470401e-03	k: 3268	n:2300000
Cons ci ratio: 1.298664e-03	ci left: 7.979257e-01	ci right 7.989631e-01	k: 1836423	n:2300000
KS ci ratio: 1.668262e-01	ci left: 2.199792e-04	ci right 2.604270e-04	k: 551	n:2300000
CDH15   2300000 perm   2280 sec   (1009 perm/sec)   p_kst 2.395652e-04   p_cons 7.984448e-01   p_joint 1.420870e-03

Joint ci ratio: 6.870236e-02	ci left: 1.359000e-03	ci right 1.456110e-03	k: 3250	n:2310000
Cons ci ratio: 1.295846e-03	ci left: 7.979280e-01	ci right 7.989631e-01	k: 1844410	n:2310000
KS ci ratio: 1.668263e-01	ci left: 2.190269e-04	ci right 2.592997e-04	k: 551	n:2310000
CDH15   2310000 perm   2298 sec   (1005 perm/sec)   p_kst 2.385281e-04   p_cons 7.984459e-01   p_joint 1.406926e-03

Joint ci ratio: 6.916212e-02	ci left: 1.334926e-03	ci right 1.430980e-03	k: 3207	n:2320000
Cons ci ratio: 1.292905e-03	ci left: 7.979651e-01	ci right 7.989979e-01	k: 1852478	n:2320000
KS ci ratio: 1.668264e-01	ci left: 2.180828e-04	ci right 2.581820e-04	k: 551	n:2320000
CDH15   2320000 perm   2315 sec   (1002 perm/sec)   p_kst 2.375000e-04   p_cons 7.984819e-01   p_joint 1.382328e-03

Joint ci ratio: 6.895814e-02	ci left: 1.337211e-03	ci right 1.433134e-03	k: 3226	n:2330000
Cons ci ratio: 1.290036e-03	ci left: 7.979891e-01	ci right 7.990196e-01	k: 1860516	n:2330000
KS ci ratio: 1.663749e-01	ci left: 2.183807e-04	ci right 2.584151e-04	k: 554	n:2330000
CDH15   2330000 perm   2333 sec   (999 perm/sec)   p_kst 2.377682e-04   p_cons 7.985047e-01   p_joint 1.384549e-03

Joint ci ratio: 7.010994e-02	ci left: 1.287404e-03	ci right 1.381359e-03	k: 3121	n:2340000
Cons ci ratio: 1.287287e-03	ci left: 7.979876e-01	ci right 7.990159e-01	k: 1868495	n:2340000
KS ci ratio: 1.660759e-01	ci left: 2.182666e-04	ci right 2.582010e-04	k: 556	n:2340000
CDH15   2340000 perm   2352 sec   (995 perm/sec)   p_kst 2.376068e-04   p_cons 7.985021e-01   p_joint 1.333761e-03

Joint ci ratio: 7.020026e-02	ci left: 1.278580e-03	ci right 1.372017e-03	k: 3113	n:2350000
Cons ci ratio: 1.284613e-03	ci left: 7.979717e-01	ci right 7.989978e-01	k: 1876440	n:2350000
KS ci ratio: 1.659271e-01	ci left: 2.177457e-04	ci right 2.575455e-04	k: 557	n:2350000
CDH15   2350000 perm   2370 sec   (991 perm/sec)   p_kst 2.370213e-04   p_cons 7.984851e-01   p_joint 1.324681e-03

Joint ci ratio: 7.009910e-02	ci left: 1.276909e-03	ci right 1.370084e-03	k: 3122	n:2360000
Cons ci ratio: 1.281968e-03	ci left: 7.979529e-01	ci right 7.989769e-01	k: 1884378	n:2360000
KS ci ratio: 1.657787e-01	ci left: 2.172292e-04	ci right 2.568955e-04	k: 558	n:2360000
CDH15   2360000 perm   2389 sec   (988 perm/sec)   p_kst 2.364407e-04   p_cons 7.984653e-01   p_joint 1.322881e-03

Joint ci ratio: 6.990903e-02	ci left: 1.278569e-03	ci right 1.371601e-03	k: 3139	n:2370000
Cons ci ratio: 1.279325e-03	ci left: 7.979376e-01	ci right 7.989595e-01	k: 1892324	n:2370000
KS ci ratio: 1.656306e-01	ci left: 2.167170e-04	ci right 2.562510e-04	k: 559	n:2370000
CDH15   2370000 perm   2408 sec   (984 perm/sec)   p_kst 2.358650e-04   p_cons 7.984489e-01   p_joint 1.324473e-03

Joint ci ratio: 7.009949e-02	ci left: 1.266179e-03	ci right 1.358571e-03	k: 3122	n:2380000
Cons ci ratio: 1.276564e-03	ci left: 7.979566e-01	ci right 7.989763e-01	k: 1900351	n:2380000
KS ci ratio: 1.653357e-01	ci left: 2.166120e-04	ci right 2.560494e-04	k: 561	n:2380000
CDH15   2380000 perm   2426 sec   (981 perm/sec)   p_kst 2.357143e-04   p_cons 7.984668e-01   p_joint 1.311765e-03

Joint ci ratio: 7.005477e-02	ci left: 1.262525e-03	ci right 1.354589e-03	k: 3126	n:2390000
Cons ci ratio: 1.273771e-03	ci left: 7.979880e-01	ci right 7.990055e-01	k: 1908408	n:2390000
KS ci ratio: 1.648961e-01	ci left: 2.169090e-04	ci right 2.562851e-04	k: 564	n:2390000
CDH15   2390000 perm   2445 sec   (978 perm/sec)   p_kst 2.359833e-04   p_cons 7.984971e-01   p_joint 1.307950e-03

Joint ci ratio: 6.993191e-02	ci left: 1.261768e-03	ci right 1.353609e-03	k: 3137	n:2400000
Cons ci ratio: 1.271234e-03	ci left: 7.979586e-01	ci right 7.989740e-01	k: 1916320	n:2400000
KS ci ratio: 1.644600e-01	ci left: 2.172037e-04	ci right 2.565187e-04	k: 567	n:2400000
CDH15   2400000 perm   2464 sec   (974 perm/sec)   p_kst 2.362500e-04   p_cons 7.984667e-01   p_joint 1.307083e-03

Joint ci ratio: 7.008883e-02	ci left: 1.250825e-03	ci right 1.342082e-03	k: 3123	n:2410000
Cons ci ratio: 1.268528e-03	ci left: 7.979764e-01	ci right 7.989897e-01	k: 1924345	n:2410000
KS ci ratio: 1.643155e-01	ci left: 2.167003e-04	ci right 2.558863e-04	k: 568	n:2410000
CDH15   2410000 perm   2482 sec   (971 perm/sec)   p_kst 2.356846e-04   p_cons 7.984834e-01   p_joint 1.295851e-03

Joint ci ratio: 6.987657e-02	ci left: 1.253370e-03	ci right 1.344524e-03	k: 3142	n:2420000
Cons ci ratio: 1.265950e-03	ci left: 7.979659e-01	ci right 7.989772e-01	k: 1932302	n:2420000
KS ci ratio: 1.635982e-01	ci left: 2.177862e-04	ci right 2.569797e-04	k: 573	n:2420000
CDH15   2420000 perm   2500 sec   (968 perm/sec)   p_kst 2.367769e-04   p_cons 7.984719e-01   p_joint 1.298347e-03

Joint ci ratio: 6.977680e-02	ci left: 1.251851e-03	ci right 1.342760e-03	k: 3151	n:2430000
Cons ci ratio: 1.263271e-03	ci left: 7.979852e-01	ci right 7.989943e-01	k: 1940331	n:2430000
KS ci ratio: 1.631723e-01	ci left: 2.180741e-04	ci right 2.572072e-04	k: 576	n:2430000
CDH15   2430000 perm   2519 sec   (965 perm/sec)   p_kst 2.370370e-04   p_cons 7.984901e-01   p_joint 1.296708e-03

Joint ci ratio: 7.156089e-02	ci left: 1.184317e-03	ci right 1.272612e-03	k: 2996	n:2440000
Cons ci ratio: 1.260742e-03	ci left: 7.979703e-01	ci right 7.989774e-01	k: 1948277	n:2440000
KS ci ratio: 1.628903e-01	ci left: 2.179665e-04	ci right 2.570062e-04	k: 578	n:2440000
CDH15   2440000 perm   2538 sec   (962 perm/sec)   p_kst 2.368852e-04   p_cons 7.984742e-01   p_joint 1.227869e-03

Joint ci ratio: 7.135872e-02	ci left: 1.186298e-03	ci right 1.274480e-03	k: 3013	n:2450000
Cons ci ratio: 1.258196e-03	ci left: 7.979637e-01	ci right 7.989687e-01	k: 1956243	n:2450000
KS ci ratio: 1.627498e-01	ci left: 2.174684e-04	ci right 2.563820e-04	k: 579	n:2450000
CDH15   2450000 perm   2556 sec   (958 perm/sec)   p_kst 2.363265e-04   p_cons 7.984665e-01   p_joint 1.229796e-03

Joint ci ratio: 7.114651e-02	ci left: 1.188662e-03	ci right 1.276747e-03	k: 3031	n:2460000
Cons ci ratio: 1.255574e-03	ci left: 7.979807e-01	ci right 7.989836e-01	k: 1964267	n:2460000
KS ci ratio: 1.621915e-01	ci left: 2.181443e-04	ci right 2.570318e-04	k: 583	n:2460000
CDH15   2460000 perm   2575 sec   (955 perm/sec)   p_kst 2.369919e-04   p_cons 7.984825e-01   p_joint 1.232114e-03

Joint ci ratio: 7.095947e-02	ci left: 1.190212e-03	ci right 1.278170e-03	k: 3047	n:2470000
Cons ci ratio: 1.253088e-03	ci left: 7.979668e-01	ci right 7.989677e-01	k: 1972215	n:2470000
KS ci ratio: 1.615015e-01	ci left: 2.192034e-04	ci right 2.580974e-04	k: 588	n:2470000
CDH15   2470000 perm   2594 sec   (952 perm/sec)   p_kst 2.380567e-04   p_cons 7.984676e-01   p_joint 1.233603e-03

Joint ci ratio: 7.090145e-02	ci left: 1.187393e-03	ci right 1.275068e-03	k: 3052	n:2480000
Cons ci ratio: 1.250491e-03	ci left: 7.979853e-01	ci right 7.989842e-01	k: 1980243	n:2480000
KS ci ratio: 1.612280e-01	ci left: 2.190935e-04	ci right 2.578957e-04	k: 590	n:2480000
CDH15   2480000 perm   2613 sec   (949 perm/sec)   p_kst 2.379032e-04   p_cons 7.984851e-01   p_joint 1.230645e-03

Joint ci ratio: 7.077408e-02	ci left: 1.186964e-03	ci right 1.274444e-03	k: 3063	n:2490000
Cons ci ratio: 1.247916e-03	ci left: 7.980020e-01	ci right 7.989989e-01	k: 1988267	n:2490000
KS ci ratio: 1.609559e-01	ci left: 2.189844e-04	ci right 2.576955e-04	k: 592	n:2490000
CDH15   2490000 perm   2633 sec   (946 perm/sec)   p_kst 2.377510e-04   p_cons 7.985008e-01   p_joint 1.230120e-03

Joint ci ratio: 7.061292e-02	ci left: 1.187717e-03	ci right 1.275045e-03	k: 3077	n:2500000
Cons ci ratio: 1.245362e-03	ci left: 7.980174e-01	ci right 7.990123e-01	k: 1996288	n:2500000
KS ci ratio: 1.604157e-01	ci left: 2.196441e-04	ci right 2.583290e-04	k: 596	n:2500000
CDH15   2500000 perm   2652 sec   (943 perm/sec)   p_kst 2.384000e-04   p_cons 7.985152e-01   p_joint 1.230800e-03

Joint ci ratio: 6.694570e-02	ci left: 1.318468e-03	ci right 1.410179e-03	k: 3423	n:2510000
Cons ci ratio: 1.242878e-03	ci left: 7.980188e-01	ci right 7.990116e-01	k: 2004274	n:2510000
KS ci ratio: 1.601477e-01	ci left: 2.195339e-04	ci right 2.581286e-04	k: 598	n:2510000
CDH15   2510000 perm   2671 sec   (940 perm/sec)   p_kst 2.382470e-04   p_cons 7.985155e-01   p_joint 1.363745e-03

Joint ci ratio: 6.679952e-02	ci left: 1.319089e-03	ci right 1.410635e-03	k: 3438	n:2520000
Cons ci ratio: 1.240500e-03	ci left: 7.979963e-01	ci right 7.989872e-01	k: 2012200	n:2520000
KS ci ratio: 1.598810e-01	ci left: 2.194246e-04	ci right 2.579296e-04	k: 600	n:2520000
CDH15   2520000 perm   2690 sec   (937 perm/sec)   p_kst 2.380952e-04   p_cons 7.984921e-01   p_joint 1.364286e-03

Joint ci ratio: 6.689717e-02	ci left: 1.309988e-03	ci right 1.401041e-03	k: 3428	n:2530000
Cons ci ratio: 1.237977e-03	ci left: 7.980151e-01	ci right 7.990040e-01	k: 2020230	n:2530000
KS ci ratio: 1.592200e-01	ci left: 2.204547e-04	ci right 2.589653e-04	k: 605	n:2530000
CDH15   2530000 perm   2709 sec   (934 perm/sec)   p_kst 2.391304e-04   p_cons 7.985099e-01   p_joint 1.354941e-03

Joint ci ratio: 6.735124e-02	ci left: 1.287024e-03	ci right 1.377111e-03	k: 3382	n:2540000
Cons ci ratio: 1.235468e-03	ci left: 7.980341e-01	ci right 7.990211e-01	k: 2028261	n:2540000
KS ci ratio: 1.589579e-01	ci left: 2.203428e-04	ci right 2.587644e-04	k: 607	n:2540000
CDH15   2540000 perm   2728 sec   (931 perm/sec)   p_kst 2.389764e-04   p_cons 7.985280e-01   p_joint 1.331496e-03

Joint ci ratio: 6.727181e-02	ci left: 1.285061e-03	ci right 1.374901e-03	k: 3390	n:2550000
Cons ci ratio: 1.232972e-03	ci left: 7.980538e-01	ci right 7.990388e-01	k: 2036294	n:2550000
KS ci ratio: 1.585672e-01	ci left: 2.206085e-04	ci right 2.589728e-04	k: 610	n:2550000
CDH15   2550000 perm   2748 sec   (928 perm/sec)   p_kst 2.392157e-04   p_cons 7.985467e-01   p_joint 1.329412e-03

Joint ci ratio: 6.716300e-02	ci left: 1.284266e-03	ci right 1.373899e-03	k: 3401	n:2560000
Cons ci ratio: 1.230553e-03	ci left: 7.980570e-01	ci right 7.990400e-01	k: 2044285	n:2560000
KS ci ratio: 1.583083e-01	ci left: 2.204970e-04	ci right 2.587734e-04	k: 612	n:2560000
CDH15   2560000 perm   2767 sec   (925 perm/sec)   p_kst 2.390625e-04   p_cons 7.985488e-01   p_joint 1.328516e-03

Joint ci ratio: 6.697615e-02	ci left: 1.286538e-03	ci right 1.376070e-03	k: 3420	n:2570000
Cons ci ratio: 1.228160e-03	ci left: 7.980570e-01	ci right 7.990381e-01	k: 2052268	n:2570000
KS ci ratio: 1.577943e-01	ci left: 2.211339e-04	ci right 2.593845e-04	k: 616	n:2570000
CDH15   2570000 perm   2786 sec   (922 perm/sec)   p_kst 2.396887e-04   p_cons 7.985479e-01   p_joint 1.330739e-03

Joint ci ratio: 6.765296e-02	ci left: 1.255638e-03	ci right 1.343937e-03	k: 3352	n:2580000
Cons ci ratio: 1.225790e-03	ci left: 7.980546e-01	ci right 7.990338e-01	k: 2060245	n:2580000
KS ci ratio: 1.576666e-01	ci left: 2.206491e-04	ci right 2.587820e-04	k: 617	n:2580000
CDH15   2580000 perm   2806 sec   (919 perm/sec)   p_kst 2.391473e-04   p_cons 7.985446e-01   p_joint 1.299225e-03

Joint ci ratio: 6.870760e-02	ci left: 1.212078e-03	ci right 1.298696e-03	k: 3250	n:2590000
Cons ci ratio: 1.223403e-03	ci left: 7.980604e-01	ci right 7.990377e-01	k: 2068243	n:2590000
KS ci ratio: 1.576667e-01	ci left: 2.197971e-04	ci right 2.577828e-04	k: 617	n:2590000
CDH15   2590000 perm   2826 sec   (916 perm/sec)   p_kst 2.382239e-04   p_cons 7.985494e-01   p_joint 1.254826e-03

Joint ci ratio: 6.851810e-02	ci left: 1.214220e-03	ci right 1.300743e-03	k: 3268	n:2600000
Cons ci ratio: 1.221007e-03	ci left: 7.980723e-01	ci right 7.990478e-01	k: 2076257	n:2600000
KS ci ratio: 1.575393e-01	ci left: 2.193212e-04	ci right 2.571911e-04	k: 618	n:2600000
CDH15   2600000 perm   2846 sec   (914 perm/sec)   p_kst 2.376923e-04   p_cons 7.985604e-01   p_joint 1.256923e-03

Joint ci ratio: 6.836141e-02	ci left: 1.215217e-03	ci right 1.301605e-03	k: 3283	n:2610000
Cons ci ratio: 1.218636e-03	ci left: 7.980811e-01	ci right 7.990546e-01	k: 2084263	n:2610000
KS ci ratio: 1.569068e-01	ci left: 2.203213e-04	ci right 2.581967e-04	k: 623	n:2610000
CDH15   2610000 perm   2866 sec   (911 perm/sec)   p_kst 2.386973e-04   p_cons 7.985682e-01   p_joint 1.257854e-03

Joint ci ratio: 6.818510e-02	ci left: 1.216957e-03	ci right 1.303236e-03	k: 3300	n:2620000
Cons ci ratio: 1.216325e-03	ci left: 7.980776e-01	ci right 7.990492e-01	k: 2092237	n:2620000
KS ci ratio: 1.569069e-01	ci left: 2.194803e-04	ci right 2.572113e-04	k: 623	n:2620000
CDH15   2620000 perm   2887 sec   (908 perm/sec)   p_kst 2.377863e-04   p_cons 7.985637e-01   p_joint 1.259542e-03

Joint ci ratio: 6.797938e-02	ci left: 1.219804e-03	ci right 1.306014e-03	k: 3320	n:2630000
Cons ci ratio: 1.214005e-03	ci left: 7.980798e-01	ci right 7.990496e-01	k: 2100226	n:2630000
KS ci ratio: 1.564063e-01	ci left: 2.201071e-04	ci right 2.578137e-04	k: 627	n:2630000
CDH15   2630000 perm   2907 sec   (905 perm/sec)   p_kst 2.384030e-04   p_cons 7.985650e-01   p_joint 1.262357e-03

Joint ci ratio: 6.978040e-02	ci left: 1.152270e-03	ci right 1.235952e-03	k: 3151	n:2640000
Cons ci ratio: 1.211700e-03	ci left: 7.980816e-01	ci right 7.990496e-01	k: 2108214	n:2640000
KS ci ratio: 1.561579e-01	ci left: 2.200013e-04	ci right 2.576244e-04	k: 629	n:2640000
CDH15   2640000 perm   2926 sec   (902 perm/sec)   p_kst 2.382576e-04   p_cons 7.985659e-01   p_joint 1.193561e-03

Joint ci ratio: 6.964795e-02	ci left: 1.152371e-03	ci right 1.235895e-03	k: 3163	n:2650000
Cons ci ratio: 1.209434e-03	ci left: 7.980766e-01	ci right 7.990428e-01	k: 2116184	n:2650000
KS ci ratio: 1.560341e-01	ci left: 2.195337e-04	ci right 2.570443e-04	k: 630	n:2650000
CDH15   2650000 perm   2946 sec   (899 perm/sec)   p_kst 2.377358e-04   p_cons 7.985600e-01   p_joint 1.193585e-03

Joint ci ratio: 6.948340e-02	ci left: 1.153580e-03	ci right 1.236986e-03	k: 3178	n:2660000
Cons ci ratio: 1.207131e-03	ci left: 7.980848e-01	ci right 7.990491e-01	k: 2124189	n:2660000
KS ci ratio: 1.554195e-01	ci left: 2.205149e-04	ci right 2.580308e-04	k: 635	n:2660000
CDH15   2660000 perm   2967 sec   (897 perm/sec)   p_kst 2.387218e-04   p_cons 7.985673e-01   p_joint 1.194737e-03

Joint ci ratio: 6.933088e-02	ci left: 1.154412e-03	ci right 1.237687e-03	k: 3192	n:2670000
Cons ci ratio: 1.204927e-03	ci left: 7.980701e-01	ci right 7.990326e-01	k: 2132133	n:2670000
KS ci ratio: 1.550542e-01	ci left: 2.207689e-04	ci right 2.582316e-04	k: 638	n:2670000
CDH15   2670000 perm   2987 sec   (894 perm/sec)   p_kst 2.389513e-04   p_cons 7.985517e-01   p_joint 1.195506e-03

Joint ci ratio: 6.921177e-02	ci left: 1.154138e-03	ci right 1.237245e-03	k: 3203	n:2680000
Cons ci ratio: 1.202703e-03	ci left: 7.980641e-01	ci right 7.990248e-01	k: 2140100	n:2680000
KS ci ratio: 1.549331e-01	ci left: 2.203038e-04	ci right 2.576557e-04	k: 639	n:2680000
CDH15   2680000 perm   3008 sec   (891 perm/sec)   p_kst 2.384328e-04   p_cons 7.985448e-01   p_joint 1.195149e-03

Joint ci ratio: 6.905029e-02	ci left: 1.155327e-03	ci right 1.238318e-03	k: 3218	n:2690000
Cons ci ratio: 1.200474e-03	ci left: 7.980626e-01	ci right 7.990215e-01	k: 2148079	n:2690000
KS ci ratio: 1.548122e-01	ci left: 2.198422e-04	ci right 2.570840e-04	k: 640	n:2690000
CDH15   2690000 perm   3028 sec   (888 perm/sec)   p_kst 2.379182e-04   p_cons 7.985424e-01   p_joint 1.196283e-03

Joint ci ratio: 6.896469e-02	ci left: 1.153960e-03	ci right 1.236746e-03	k: 3226	n:2700000
Cons ci ratio: 1.198268e-03	ci left: 7.980585e-01	ci right 7.990157e-01	k: 2156051	n:2700000
KS ci ratio: 1.546916e-01	ci left: 2.193840e-04	ci right 2.565165e-04	k: 641	n:2700000
CDH15   2700000 perm   3049 sec   (886 perm/sec)   p_kst 2.374074e-04   p_cons 7.985374e-01   p_joint 1.194815e-03

Joint ci ratio: 6.898625e-02	ci left: 1.148976e-03	ci right 1.231431e-03	k: 3224	n:2710000
Cons ci ratio: 1.196024e-03	ci left: 7.980677e-01	ci right 7.990232e-01	k: 2164059	n:2710000
KS ci ratio: 1.544513e-01	ci left: 2.192839e-04	ci right 2.563365e-04	k: 643	n:2710000
CDH15   2710000 perm   3070 sec   (883 perm/sec)   p_kst 2.372694e-04   p_cons 7.985458e-01   p_joint 1.189668e-03

Joint ci ratio: 6.895430e-02	ci left: 1.145836e-03	ci right 1.228026e-03	k: 3227	n:2720000
Cons ci ratio: 1.193915e-03	ci left: 7.980438e-01	ci right 7.989975e-01	k: 2171977	n:2720000
KS ci ratio: 1.542120e-01	ci left: 2.191846e-04	ci right 2.561578e-04	k: 645	n:2720000
CDH15   2720000 perm   3090 sec   (880 perm/sec)   p_kst 2.371324e-04   p_cons 7.985210e-01   p_joint 1.186397e-03

Joint ci ratio: 6.881586e-02	ci left: 1.146319e-03	ci right 1.228372e-03	k: 3240	n:2730000
Cons ci ratio: 1.191720e-03	ci left: 7.980464e-01	ci right 7.989984e-01	k: 2179967	n:2730000
KS ci ratio: 1.539738e-01	ci left: 2.190861e-04	ci right 2.559803e-04	k: 647	n:2730000
CDH15   2730000 perm   3110 sec   (878 perm/sec)   p_kst 2.369963e-04   p_cons 7.985227e-01   p_joint 1.186813e-03

Joint ci ratio: 6.866768e-02	ci left: 1.147157e-03	ci right 1.229086e-03	k: 3254	n:2740000
Cons ci ratio: 1.189513e-03	ci left: 7.980556e-01	ci right 7.990058e-01	k: 2187975	n:2740000
KS ci ratio: 1.536186e-01	ci left: 2.193393e-04	ci right 2.561830e-04	k: 650	n:2740000
CDH15   2740000 perm   3131 sec   (875 perm/sec)   p_kst 2.372263e-04   p_cons 7.985310e-01   p_joint 1.187591e-03

Joint ci ratio: 6.858350e-02	ci left: 1.145844e-03	ci right 1.227575e-03	k: 3262	n:2750000
Cons ci ratio: 1.187336e-03	ci left: 7.980596e-01	ci right 7.990081e-01	k: 2195969	n:2750000
KS ci ratio: 1.535008e-01	ci left: 2.188913e-04	ci right 2.556291e-04	k: 651	n:2750000
CDH15   2750000 perm   3152 sec   (872 perm/sec)   p_kst 2.367273e-04   p_cons 7.985342e-01   p_joint 1.186182e-03

Joint ci ratio: 6.843682e-02	ci left: 1.146678e-03	ci right 1.228287e-03	k: 3276	n:2760000
Cons ci ratio: 1.185188e-03	ci left: 7.980593e-01	ci right 7.990060e-01	k: 2203951	n:2760000
KS ci ratio: 1.531489e-01	ci left: 2.191435e-04	ci right 2.558315e-04	k: 654	n:2760000
CDH15   2760000 perm   3173 sec   (870 perm/sec)   p_kst 2.369565e-04   p_cons 7.985330e-01   p_joint 1.186957e-03

Joint ci ratio: 6.881645e-02	ci left: 1.129765e-03	ci right 1.210634e-03	k: 3240	n:2770000
Cons ci ratio: 1.182979e-03	ci left: 7.980784e-01	ci right 7.990235e-01	k: 2211987	n:2770000
KS ci ratio: 1.529156e-01	ci left: 2.190467e-04	ci right 2.556576e-04	k: 656	n:2770000
CDH15   2770000 perm   3195 sec   (867 perm/sec)   p_kst 2.368231e-04   p_cons 7.985513e-01   p_joint 1.169675e-03

Joint ci ratio: 6.857342e-02	ci left: 1.133832e-03	ci right 1.214694e-03	k: 3263	n:2780000
Cons ci ratio: 1.180766e-03	ci left: 7.981022e-01	ci right 7.990454e-01	k: 2220036	n:2780000
KS ci ratio: 1.521073e-01	ci left: 2.206807e-04	ci right 2.573519e-04	k: 663	n:2780000
CDH15   2780000 perm   3216 sec   (865 perm/sec)   p_kst 2.384892e-04   p_cons 7.985741e-01   p_joint 1.173741e-03

Joint ci ratio: 6.842680e-02	ci left: 1.134700e-03	ci right 1.215445e-03	k: 3277	n:2790000
Cons ci ratio: 1.178588e-03	ci left: 7.981192e-01	ci right 7.990608e-01	k: 2228067	n:2790000
KS ci ratio: 1.519929e-01	ci left: 2.202345e-04	ci right 2.568016e-04	k: 664	n:2790000
CDH15   2790000 perm   3237 sec   (862 perm/sec)   p_kst 2.379928e-04   p_cons 7.985903e-01   p_joint 1.174552e-03

Joint ci ratio: 6.306748e-02	ci left: 1.334395e-03	ci right 1.421641e-03	k: 3857	n:2800000
Cons ci ratio: 1.176527e-03	ci left: 7.981076e-01	ci right 7.990475e-01	k: 2236018	n:2800000
KS ci ratio: 1.513118e-01	ci left: 2.215095e-04	ci right 2.581085e-04	k: 670	n:2800000
CDH15   2800000 perm   3262 sec   (858 perm/sec)   p_kst 2.392857e-04   p_cons 7.985779e-01   p_joint 1.377500e-03

Joint ci ratio: 6.300226e-02	ci left: 1.332449e-03	ci right 1.419474e-03	k: 3865	n:2810000
Cons ci ratio: 1.174497e-03	ci left: 7.980907e-01	ci right 7.990290e-01	k: 2243954	n:2810000
KS ci ratio: 1.508627e-01	ci left: 2.220909e-04	ci right 2.586672e-04	k: 674	n:2810000
CDH15   2810000 perm   3284 sec   (856 perm/sec)   p_kst 2.398577e-04   p_cons 7.985601e-01   p_joint 1.375445e-03

Joint ci ratio: 6.297795e-02	ci left: 1.328771e-03	ci right 1.415521e-03	k: 3868	n:2820000
Cons ci ratio: 1.172399e-03	ci left: 7.980952e-01	ci right 7.990318e-01	k: 2251950	n:2820000
KS ci ratio: 1.505286e-01	ci left: 2.223271e-04	ci right 2.588539e-04	k: 677	n:2820000
CDH15   2820000 perm   3305 sec   (853 perm/sec)   p_kst 2.400709e-04   p_cons 7.985638e-01   p_joint 1.371631e-03

Joint ci ratio: 6.288053e-02	ci left: 1.328249e-03	ci right 1.414826e-03	k: 3880	n:2830000
Cons ci ratio: 1.170379e-03	ci left: 7.980813e-01	ci right 7.990163e-01	k: 2259894	n:2830000
KS ci ratio: 1.501966e-01	ci left: 2.225617e-04	ci right 2.590391e-04	k: 680	n:2830000
CDH15   2830000 perm   3327 sec   (851 perm/sec)   p_kst 2.402827e-04   p_cons 7.985491e-01   p_joint 1.371025e-03

Joint ci ratio: 6.277548e-02	ci left: 1.328077e-03	ci right 1.414494e-03	k: 3893	n:2840000
Cons ci ratio: 1.168374e-03	ci left: 7.980665e-01	ci right 7.989998e-01	k: 2267835	n:2840000
KS ci ratio: 1.499766e-01	ci left: 2.224558e-04	ci right 2.588577e-04	k: 682	n:2840000
CDH15   2840000 perm   3348 sec   (848 perm/sec)   p_kst 2.401408e-04   p_cons 7.985335e-01   p_joint 1.370775e-03

Joint ci ratio: 6.268704e-02	ci left: 1.327217e-03	ci right 1.413451e-03	k: 3904	n:2850000
Cons ci ratio: 1.166271e-03	ci left: 7.980816e-01	ci right 7.990132e-01	k: 2275861	n:2850000
KS ci ratio: 1.498669e-01	ci left: 2.220129e-04	ci right 2.583134e-04	k: 683	n:2850000
CDH15   2850000 perm   3370 sec   (846 perm/sec)   p_kst 2.396491e-04   p_cons 7.985477e-01   p_joint 1.369825e-03

Joint ci ratio: 6.258296e-02	ci left: 1.327050e-03	ci right 1.413125e-03	k: 3917	n:2860000
Cons ci ratio: 1.164260e-03	ci left: 7.980742e-01	ci right 7.990042e-01	k: 2283823	n:2860000
KS ci ratio: 1.496483e-01	ci left: 2.219098e-04	ci right 2.581357e-04	k: 685	n:2860000
CDH15   2860000 perm   3392 sec   (843 perm/sec)   p_kst 2.395105e-04   p_cons 7.985395e-01   p_joint 1.369580e-03

Joint ci ratio: 6.258311e-02	ci left: 1.322426e-03	ci right 1.408202e-03	k: 3917	n:2870000
Cons ci ratio: 1.162187e-03	ci left: 7.980867e-01	ci right 7.990151e-01	k: 2291842	n:2870000
KS ci ratio: 1.494307e-01	ci left: 2.218074e-04	ci right 2.579592e-04	k: 687	n:2870000
CDH15   2870000 perm   3414 sec   (841 perm/sec)   p_kst 2.393728e-04   p_cons 7.985512e-01   p_joint 1.364808e-03

Joint ci ratio: 6.251938e-02	ci left: 1.320569e-03	ci right 1.406133e-03	k: 3925	n:2880000
Cons ci ratio: 1.160142e-03	ci left: 7.980946e-01	ci right 7.990214e-01	k: 2299848	n:2880000
KS ci ratio: 1.494307e-01	ci left: 2.210372e-04	ci right 2.570635e-04	k: 687	n:2880000
CDH15   2880000 perm   3436 sec   (838 perm/sec)   p_kst 2.385417e-04   p_cons 7.985583e-01   p_joint 1.362847e-03

Joint ci ratio: 6.241613e-02	ci left: 1.320427e-03	ci right 1.405836e-03	k: 3938	n:2890000
Cons ci ratio: 1.158150e-03	ci left: 7.980907e-01	ci right 7.990159e-01	k: 2307820	n:2890000
KS ci ratio: 1.491060e-01	ci left: 2.212716e-04	ci right 2.572509e-04	k: 690	n:2890000
CDH15   2890000 perm   3458 sec   (836 perm/sec)   p_kst 2.387543e-04   p_cons 7.985536e-01   p_joint 1.362630e-03

Joint ci ratio: 6.232129e-02	ci left: 1.319948e-03	ci right 1.405191e-03	k: 3950	n:2900000
Cons ci ratio: 1.156141e-03	ci left: 7.980945e-01	ci right 7.990180e-01	k: 2315814	n:2900000
KS ci ratio: 1.486762e-01	ci left: 2.218366e-04	ci right 2.577944e-04	k: 694	n:2900000
CDH15   2900000 perm   3480 sec   (833 perm/sec)   p_kst 2.393103e-04   p_cons 7.985566e-01   p_joint 1.362069e-03

Joint ci ratio: 6.217976e-02	ci left: 1.321501e-03	ci right 1.406644e-03	k: 3968	n:2910000
Cons ci ratio: 1.154113e-03	ci left: 7.981064e-01	ci right 7.990284e-01	k: 2323832	n:2910000
KS ci ratio: 1.481442e-01	ci left: 2.227287e-04	ci right 2.586905e-04	k: 699	n:2910000
CDH15   2910000 perm   3503 sec   (831 perm/sec)   p_kst 2.402062e-04   p_cons 7.985677e-01   p_joint 1.363574e-03

Joint ci ratio: 6.244038e-02	ci left: 1.305850e-03	ci right 1.390350e-03	k: 3935	n:2920000
Cons ci ratio: 1.152067e-03	ci left: 7.981262e-01	ci right 7.990465e-01	k: 2331873	n:2920000
KS ci ratio: 1.479331e-01	ci left: 2.226254e-04	ci right 2.585149e-04	k: 701	n:2920000
CDH15   2920000 perm   3525 sec   (828 perm/sec)   p_kst 2.400685e-04   p_cons 7.985866e-01   p_joint 1.347603e-03

Joint ci ratio: 6.260799e-02	ci left: 1.294337e-03	ci right 1.378325e-03	k: 3914	n:2930000
Cons ci ratio: 1.150099e-03	ci left: 7.981270e-01	ci right 7.990458e-01	k: 2339859	n:2930000
KS ci ratio: 1.476180e-01	ci left: 2.228517e-04	ci right 2.586943e-04	k: 704	n:2930000
CDH15   2930000 perm   3548 sec   (826 perm/sec)   p_kst 2.402730e-04   p_cons 7.985867e-01   p_joint 1.335836e-03

Joint ci ratio: 6.250431e-02	ci left: 1.294288e-03	ci right 1.378128e-03	k: 3927	n:2940000
Cons ci ratio: 1.148066e-03	ci left: 7.981489e-01	ci right 7.990661e-01	k: 2347907	n:2940000
KS ci ratio: 1.474090e-01	ci left: 2.227488e-04	ci right 2.585197e-04	k: 706	n:2940000
CDH15   2940000 perm   3572 sec   (823 perm/sec)   p_kst 2.401361e-04   p_cons 7.986078e-01   p_joint 1.335714e-03

Joint ci ratio: 6.262429e-02	ci left: 1.284895e-03	ci right 1.368292e-03	k: 3912	n:2950000
Cons ci ratio: 1.146106e-03	ci left: 7.981534e-01	ci right 7.990690e-01	k: 2355904	n:2950000
KS ci ratio: 1.470972e-01	ci left: 2.229732e-04	ci right 2.586978e-04	k: 709	n:2950000
CDH15   2950000 perm   3598 sec   (820 perm/sec)   p_kst 2.403390e-04   p_cons 7.986115e-01   p_joint 1.326102e-03

Joint ci ratio: 6.242507e-02	ci left: 1.288868e-03	ci right 1.372248e-03	k: 3937	n:2960000
Cons ci ratio: 1.144139e-03	ci left: 7.981623e-01	ci right 7.990763e-01	k: 2363914	n:2960000
KS ci ratio: 1.465820e-01	ci left: 2.238471e-04	ci right 2.595750e-04	k: 714	n:2960000
CDH15   2960000 perm   3624 sec   (817 perm/sec)   p_kst 2.412162e-04   p_cons 7.986196e-01   p_joint 1.330068e-03

Joint ci ratio: 6.232229e-02	ci left: 1.288837e-03	ci right 1.372073e-03	k: 3950	n:2970000
Cons ci ratio: 1.142233e-03	ci left: 7.981569e-01	ci right 7.990694e-01	k: 2371882	n:2970000
KS ci ratio: 1.462754e-01	ci left: 2.240665e-04	ci right 2.597481e-04	k: 717	n:2970000
CDH15   2970000 perm   3650 sec   (814 perm/sec)   p_kst 2.414141e-04   p_cons 7.986135e-01   p_joint 1.329966e-03

Joint ci ratio: 6.442181e-02	ci left: 1.200956e-03	ci right 1.281226e-03	k: 3697	n:2980000
Cons ci ratio: 1.140299e-03	ci left: 7.981623e-01	ci right 7.990733e-01	k: 2379882	n:2980000
KS ci ratio: 1.460721e-01	ci left: 2.239612e-04	ci right 2.595721e-04	k: 719	n:2980000
CDH15   2980000 perm   3676 sec   (811 perm/sec)   p_kst 2.412752e-04   p_cons 7.986181e-01   p_joint 1.240604e-03

Joint ci ratio: 6.428285e-02	ci left: 1.202204e-03	ci right 1.282379e-03	k: 3713	n:2990000
Cons ci ratio: 1.138377e-03	ci left: 7.981667e-01	ci right 7.990762e-01	k: 2387879	n:2990000
KS ci ratio: 1.456680e-01	ci left: 2.245011e-04	ci right 2.600906e-04	k: 723	n:2990000
CDH15   2990000 perm   3699 sec   (808 perm/sec)   p_kst 2.418060e-04   p_cons 7.986217e-01   p_joint 1.241806e-03

Joint ci ratio: 6.416202e-02	ci left: 1.202789e-03	ci right 1.282845e-03	k: 3727	n:3000000
Cons ci ratio: 1.136511e-03	ci left: 7.981584e-01	ci right 7.990664e-01	k: 2395838	n:3000000
KS ci ratio: 1.452672e-01	ci left: 2.250376e-04	ci right 2.606054e-04	k: 727	n:3000000
CDH15   3000000 perm   3722 sec   (806 perm/sec)   p_kst 2.423333e-04   p_cons 7.986127e-01   p_joint 1.242333e-03

Joint ci ratio: 6.408475e-02	ci left: 1.201735e-03	ci right 1.281622e-03	k: 3736	n:3010000
Cons ci ratio: 1.134668e-03	ci left: 7.981458e-01	ci right 7.990523e-01	k: 2403784	n:3010000
KS ci ratio: 1.452673e-01	ci left: 2.242900e-04	ci right 2.597396e-04	k: 727	n:3010000
CDH15   3010000 perm   3745 sec   (804 perm/sec)   p_kst 2.415282e-04   p_cons 7.985993e-01   p_joint 1.241196e-03

Joint ci ratio: 6.393943e-02	ci left: 1.203295e-03	ci right 1.283097e-03	k: 3753	n:3020000
Cons ci ratio: 1.132847e-03	ci left: 7.981297e-01	ci right 7.990347e-01	k: 2411719	n:3020000
KS ci ratio: 1.450681e-01	ci left: 2.241855e-04	ci right 2.595659e-04	k: 729	n:3020000
CDH15   3020000 perm   3768 sec   (802 perm/sec)   p_kst 2.413907e-04   p_cons 7.985825e-01   p_joint 1.242715e-03

Joint ci ratio: 6.382052e-02	ci left: 1.203870e-03	ci right 1.283557e-03	k: 3767	n:3030000
Cons ci ratio: 1.130926e-03	ci left: 7.981447e-01	ci right 7.990481e-01	k: 2419748	n:3030000
KS ci ratio: 1.447710e-01	ci left: 2.243998e-04	ci right 2.597352e-04	k: 732	n:3030000
CDH15   3030000 perm   3791 sec   (799 perm/sec)   p_kst 2.415842e-04   p_cons 7.985967e-01   p_joint 1.243234e-03

Joint ci ratio: 6.374447e-02	ci left: 1.202823e-03	ci right 1.282342e-03	k: 3776	n:3040000
Cons ci ratio: 1.129087e-03	ci left: 7.981392e-01	ci right 7.990412e-01	k: 2427715	n:3040000
KS ci ratio: 1.446723e-01	ci left: 2.239787e-04	ci right 2.592216e-04	k: 733	n:3040000
CDH15   3040000 perm   3814 sec   (797 perm/sec)   p_kst 2.411184e-04   p_cons 7.985905e-01   p_joint 1.242105e-03

Joint ci ratio: 6.413684e-02	ci left: 1.184038e-03	ci right 1.262815e-03	k: 3730	n:3050000
Cons ci ratio: 1.127240e-03	ci left: 7.981383e-01	ci right 7.990388e-01	k: 2435696	n:3050000
KS ci ratio: 1.445739e-01	ci left: 2.235603e-04	ci right 2.587115e-04	k: 734	n:3050000
CDH15   3050000 perm   3840 sec   (794 perm/sec)   p_kst 2.406557e-04   p_cons 7.985889e-01   p_joint 1.222951e-03

Joint ci ratio: 6.404252e-02	ci left: 1.183706e-03	ci right 1.262341e-03	k: 3741	n:3060000
Cons ci ratio: 1.125391e-03	ci left: 7.981407e-01	ci right 7.990398e-01	k: 2443687	n:3060000
KS ci ratio: 1.442798e-01	ci left: 2.237747e-04	ci right 2.588818e-04	k: 737	n:3060000
CDH15   3060000 perm   3883 sec   (788 perm/sec)   p_kst 2.408497e-04   p_cons 7.985905e-01   p_joint 1.222549e-03

Joint ci ratio: 6.395714e-02	ci left: 1.183056e-03	ci right 1.261538e-03	k: 3751	n:3070000
Cons ci ratio: 1.123614e-03	ci left: 7.981249e-01	ci right 7.990225e-01	k: 2451622	n:3070000
KS ci ratio: 1.440847e-01	ci left: 2.236737e-04	ci right 2.587135e-04	k: 739	n:3070000
CDH15   3070000 perm   3909 sec   (785 perm/sec)   p_kst 2.407166e-04   p_cons 7.985739e-01   p_joint 1.221824e-03

Joint ci ratio: 6.386360e-02	ci left: 1.182729e-03	ci right 1.261071e-03	k: 3762	n:3080000
Cons ci ratio: 1.121846e-03	ci left: 7.981091e-01	ci right 7.990053e-01	k: 2459557	n:3080000
KS ci ratio: 1.438904e-01	ci left: 2.235735e-04	ci right 2.585462e-04	k: 741	n:3080000
CDH15   3080000 perm   3933 sec   (783 perm/sec)   p_kst 2.405844e-04   p_cons 7.985575e-01   p_joint 1.221429e-03

Joint ci ratio: 6.376202e-02	ci left: 1.182723e-03	ci right 1.260935e-03	k: 3774	n:3090000
Cons ci ratio: 1.120121e-03	ci left: 7.980834e-01	ci right 7.989782e-01	k: 2467461	n:3090000
KS ci ratio: 1.435040e-01	ci left: 2.240979e-04	ci right 2.590505e-04	k: 745	n:3090000
CDH15   3090000 perm   3957 sec   (781 perm/sec)   p_kst 2.411003e-04   p_cons 7.985311e-01   p_joint 1.221359e-03

Joint ci ratio: 6.369461e-02	ci left: 1.181447e-03	ci right 1.259489e-03	k: 3782	n:3100000
Cons ci ratio: 1.118316e-03	ci left: 7.980834e-01	ci right 7.989767e-01	k: 2475444	n:3100000
KS ci ratio: 1.435041e-01	ci left: 2.233750e-04	ci right 2.582149e-04	k: 745	n:3100000
CDH15   3100000 perm   4007 sec   (774 perm/sec)   p_kst 2.403226e-04   p_cons 7.985303e-01   p_joint 1.220000e-03

Joint ci ratio: 6.361901e-02	ci left: 1.180496e-03	ci right 1.258379e-03	k: 3791	n:3110000
Cons ci ratio: 1.116498e-03	ci left: 7.980895e-01	ci right 7.989813e-01	k: 2483446	n:3110000
KS ci ratio: 1.432164e-01	ci left: 2.235868e-04	ci right 2.583838e-04	k: 748	n:3110000
CDH15   3110000 perm   4044 sec   (769 perm/sec)   p_kst 2.405145e-04   p_cons 7.985357e-01   p_joint 1.218971e-03

Joint ci ratio: 6.352695e-02	ci left: 1.180182e-03	ci right 1.257928e-03	k: 3802	n:3120000
Cons ci ratio: 1.114580e-03	ci left: 7.981270e-01	ci right 7.990173e-01	k: 2491546	n:3120000
KS ci ratio: 1.429304e-01	ci left: 2.237973e-04	ci right 2.585516e-04	k: 751	n:3120000
CDH15   3120000 perm   4068 sec   (767 perm/sec)   p_kst 2.407051e-04   p_cons 7.985724e-01   p_joint 1.218590e-03

Joint ci ratio: 6.341864e-02	ci left: 1.180499e-03	ci right 1.258128e-03	k: 3815	n:3130000
Cons ci ratio: 1.112804e-03	ci left: 7.981259e-01	ci right 7.990148e-01	k: 2499526	n:3130000
KS ci ratio: 1.425518e-01	ci left: 2.243146e-04	ci right 2.590491e-04	k: 755	n:3130000
CDH15   3130000 perm   4092 sec   (765 perm/sec)   p_kst 2.412141e-04   p_cons 7.985706e-01   p_joint 1.218850e-03

Joint ci ratio: 6.432813e-02	ci left: 1.143206e-03	ci right 1.219502e-03	k: 3708	n:3140000
Cons ci ratio: 1.111012e-03	ci left: 7.981321e-01	ci right 7.990196e-01	k: 2507529	n:3140000
KS ci ratio: 1.420826e-01	ci left: 2.251359e-04	ci right 2.598731e-04	k: 760	n:3140000
CDH15   3140000 perm   4121 sec   (762 perm/sec)   p_kst 2.420382e-04   p_cons 7.985761e-01   p_joint 1.180892e-03

Joint ci ratio: 6.423296e-02	ci left: 1.143013e-03	ci right 1.219178e-03	k: 3719	n:3150000
Cons ci ratio: 1.109286e-03	ci left: 7.981214e-01	ci right 7.990076e-01	k: 2515479	n:3150000
KS ci ratio: 1.418034e-01	ci left: 2.253397e-04	ci right 2.600343e-04	k: 763	n:3150000
CDH15   3150000 perm   4171 sec   (755 perm/sec)   p_kst 2.422222e-04   p_cons 7.985648e-01   p_joint 1.180635e-03

Joint ci ratio: 6.407806e-02	ci left: 1.145001e-03	ci right 1.221108e-03	k: 3737	n:3160000
Cons ci ratio: 1.107523e-03	ci left: 7.981238e-01	ci right 7.990085e-01	k: 2523470	n:3160000
KS ci ratio: 1.413416e-01	ci left: 2.261529e-04	ci right 2.608497e-04	k: 768	n:3160000
CDH15   3160000 perm   4210 sec   (751 perm/sec)   p_kst 2.430380e-04   p_cons 7.985665e-01   p_joint 1.182595e-03

Joint ci ratio: 6.404388e-02	ci left: 1.142630e-03	ci right 1.218538e-03	k: 3741	n:3170000
Cons ci ratio: 1.105759e-03	ci left: 7.981294e-01	ci right 7.990127e-01	k: 2531471	n:3170000
KS ci ratio: 1.413416e-01	ci left: 2.254394e-04	ci right 2.600268e-04	k: 768	n:3170000
CDH15   3170000 perm   4234 sec   (749 perm/sec)   p_kst 2.422713e-04   p_cons 7.985713e-01   p_joint 1.180126e-03

Joint ci ratio: 6.394143e-02	ci left: 1.142751e-03	ci right 1.218540e-03	k: 3753	n:3180000
Cons ci ratio: 1.104006e-03	ci left: 7.981336e-01	ci right 7.990155e-01	k: 2539468	n:3180000
KS ci ratio: 1.411582e-01	ci left: 2.253372e-04	ci right 2.598603e-04	k: 770	n:3180000
CDH15   3180000 perm   4258 sec   (747 perm/sec)   p_kst 2.421384e-04   p_cons 7.985748e-01   p_joint 1.180189e-03

Joint ci ratio: 6.381404e-02	ci left: 1.143795e-03	ci right 1.219497e-03	k: 3768	n:3190000
Cons ci ratio: 1.102324e-03	ci left: 7.981199e-01	ci right 7.990005e-01	k: 2547408	n:3190000
KS ci ratio: 1.407934e-01	ci left: 2.258405e-04	ci right 2.603438e-04	k: 774	n:3190000
CDH15   3190000 perm   4283 sec   (745 perm/sec)   p_kst 2.426332e-04   p_cons 7.985605e-01   p_joint 1.181191e-03

Joint ci ratio: 6.374646e-02	ci left: 1.142681e-03	ci right 1.218226e-03	k: 3776	n:3200000
Cons ci ratio: 1.100566e-03	ci left: 7.981305e-01	ci right 7.990096e-01	k: 2555425	n:3200000
KS ci ratio: 1.407027e-01	ci left: 2.254363e-04	ci right 2.598537e-04	k: 775	n:3200000
CDH15   3200000 perm   4307 sec   (743 perm/sec)   p_kst 2.421875e-04   p_cons 7.985703e-01   p_joint 1.180000e-03

Joint ci ratio: 6.367909e-02	ci left: 1.141574e-03	ci right 1.216963e-03	k: 3784	n:3210000
Cons ci ratio: 1.098868e-03	ci left: 7.981262e-01	ci right 7.990041e-01	k: 2563395	n:3210000
KS ci ratio: 1.405218e-01	ci left: 2.253351e-04	ci right 2.596891e-04	k: 777	n:3210000
CDH15   3210000 perm   4332 sec   (741 perm/sec)   p_kst 2.420561e-04   p_cons 7.985654e-01   p_joint 1.178816e-03

Joint ci ratio: 6.362034e-02	ci left: 1.140168e-03	ci right 1.215392e-03	k: 3791	n:3220000
Cons ci ratio: 1.097203e-03	ci left: 7.981143e-01	ci right 7.989908e-01	k: 2571340	n:3220000
KS ci ratio: 1.404316e-01	ci left: 2.249350e-04	ci right 2.592041e-04	k: 778	n:3220000
CDH15   3220000 perm   4357 sec   (739 perm/sec)   p_kst 2.416149e-04   p_cons 7.985528e-01   p_joint 1.177329e-03

Joint ci ratio: 6.767192e-02	ci left: 1.002646e-03	ci right 1.073176e-03	k: 3351	n:3230000
Cons ci ratio: 1.066448e-03	ci left: 8.066318e-01	ci right 8.074928e-01	k: 2606812	n:3230000
KS ci ratio: 1.401619e-01	ci left: 2.251348e-04	ci right 2.593630e-04	k: 781	n:3230000
CDH15   3230000 perm   4382 sec   (737 perm/sec)   p_kst 2.417957e-04   p_cons 8.070625e-01   p_joint 1.037461e-03

Joint ci ratio: 6.750090e-02	ci left: 1.004710e-03	ci right 1.075199e-03	k: 3368	n:3240000
Cons ci ratio: 1.064774e-03	ci left: 8.066403e-01	ci right 8.074999e-01	k: 2614908	n:3240000
KS ci ratio: 1.399830e-01	ci left: 2.250355e-04	ci right 2.592014e-04	k: 783	n:3240000
CDH15   3240000 perm   4407 sec   (735 perm/sec)   p_kst 2.416667e-04   p_cons 8.070704e-01   p_joint 1.039506e-03

Joint ci ratio: 6.744092e-02	ci left: 1.003434e-03	ci right 1.073768e-03	k: 3374	n:3250000
Cons ci ratio: 1.063222e-03	ci left: 8.066152e-01	ci right 8.074735e-01	k: 2622895	n:3250000
KS ci ratio: 1.398939e-01	ci left: 2.246400e-04	ci right 2.587223e-04	k: 784	n:3250000
CDH15   3250000 perm   4431 sec   (733 perm/sec)   p_kst 2.412308e-04   p_cons 8.070446e-01   p_joint 1.038154e-03

Joint ci ratio: 6.739108e-02	ci left: 1.001864e-03	ci right 1.072034e-03	k: 3379	n:3260000
Cons ci ratio: 1.061631e-03	ci left: 8.066040e-01	ci right 8.074611e-01	k: 2630927	n:3260000
KS ci ratio: 1.398049e-01	ci left: 2.242470e-04	ci right 2.582462e-04	k: 785	n:3260000
CDH15   3260000 perm   4466 sec   (730 perm/sec)   p_kst 2.407975e-04   p_cons 8.070328e-01   p_joint 1.036503e-03

Joint ci ratio: 6.729161e-02	ci left: 1.001806e-03	ci right 1.071865e-03	k: 3389	n:3270000
Cons ci ratio: 1.060094e-03	ci left: 8.065789e-01	ci right 8.074347e-01	k: 2638913	n:3270000
KS ci ratio: 1.397161e-01	ci left: 2.238563e-04	ci right 2.577729e-04	k: 786	n:3270000
CDH15   3270000 perm   4490 sec   (728 perm/sec)   p_kst 2.403670e-04   p_cons 8.070070e-01   p_joint 1.036391e-03

Joint ci ratio: 6.910072e-02	ci left: 9.463071e-04	ci right 1.014335e-03	k: 3214	n:3280000
Cons ci ratio: 1.058531e-03	ci left: 8.065636e-01	ci right 8.074181e-01	k: 2646931	n:3280000
KS ci ratio: 1.395389e-01	ci left: 2.237623e-04	ci right 2.576181e-04	k: 788	n:3280000
CDH15   3280000 perm   4515 sec   (726 perm/sec)   p_kst 2.402439e-04   p_cons 8.069912e-01   p_joint 9.798780e-04

Joint ci ratio: 6.900421e-02	ci left: 9.461191e-04	ci right 1.014035e-03	k: 3223	n:3290000
Cons ci ratio: 1.056847e-03	ci left: 8.065859e-01	ci right 8.074391e-01	k: 2655072	n:3290000
KS ci ratio: 1.394506e-01	ci left: 2.233755e-04	ci right 2.571496e-04	k: 789	n:3290000
CDH15   3290000 perm   4540 sec   (725 perm/sec)   p_kst 2.398176e-04   p_cons 8.070128e-01   p_joint 9.796353e-04

Joint ci ratio: 6.882292e-02	ci left: 9.483149e-04	ci right 1.016202e-03	k: 3240	n:3300000
Cons ci ratio: 1.055291e-03	ci left: 8.065729e-01	ci right 8.074248e-01	k: 2663097	n:3300000
KS ci ratio: 1.390113e-01	ci left: 2.241610e-04	ci right 2.579383e-04	k: 794	n:3300000
CDH15   3300000 perm   4565 sec   (723 perm/sec)   p_kst 2.406061e-04   p_cons 8.069991e-01   p_joint 9.818182e-04

Joint ci ratio: 6.869584e-02	ci left: 9.490129e-04	ci right 1.016820e-03	k: 3252	n:3310000
Cons ci ratio: 1.053727e-03	ci left: 8.065644e-01	ci right 8.074151e-01	k: 2671137	n:3310000
KS ci ratio: 1.387497e-01	ci left: 2.243586e-04	ci right 2.580968e-04	k: 797	n:3310000
CDH15   3310000 perm   4591 sec   (721 perm/sec)   p_kst 2.407855e-04   p_cons 8.069900e-01   p_joint 9.824773e-04

Joint ci ratio: 6.859050e-02	ci left: 9.491148e-04	ci right 1.016821e-03	k: 3262	n:3320000
Cons ci ratio: 1.052132e-03	ci left: 8.065669e-01	ci right 8.074163e-01	k: 2679213	n:3320000
KS ci ratio: 1.387498e-01	ci left: 2.236828e-04	ci right 2.573194e-04	k: 797	n:3320000
CDH15   3320000 perm   4617 sec   (719 perm/sec)   p_kst 2.400602e-04   p_cons 8.069919e-01   p_joint 9.825301e-04

Joint ci ratio: 6.849611e-02	ci left: 9.489210e-04	ci right 1.016516e-03	k: 3271	n:3330000
Cons ci ratio: 1.050537e-03	ci left: 8.065718e-01	ci right 8.074199e-01	k: 2687297	n:3330000
KS ci ratio: 1.387498e-01	ci left: 2.230111e-04	ci right 2.565467e-04	k: 797	n:3330000
CDH15   3330000 perm   4642 sec   (717 perm/sec)   p_kst 2.393393e-04   p_cons 8.069961e-01   p_joint 9.822823e-04

Joint ci ratio: 6.895122e-02	ci left: 9.334266e-04	ci right 1.000378e-03	k: 3228	n:3340000
Cons ci ratio: 1.048938e-03	ci left: 8.065799e-01	ci right 8.074267e-01	k: 2695392	n:3340000
KS ci ratio: 1.384034e-01	ci left: 2.234995e-04	ci right 2.570177e-04	k: 801	n:3340000
CDH15   3340000 perm   4668 sec   (715 perm/sec)   p_kst 2.398204e-04   p_cons 8.070036e-01   p_joint 9.664671e-04

Joint ci ratio: 6.885533e-02	ci left: 9.332806e-04	ci right 1.000124e-03	k: 3237	n:3350000
Cons ci ratio: 1.047357e-03	ci left: 8.065847e-01	ci right 8.074302e-01	k: 2703476	n:3350000
KS ci ratio: 1.382311e-01	ci left: 2.234087e-04	ci right 2.568681e-04	k: 803	n:3350000
CDH15   3350000 perm   4698 sec   (713 perm/sec)   p_kst 2.397015e-04   p_cons 8.070078e-01   p_joint 9.662687e-04

Joint ci ratio: 6.874925e-02	ci left: 9.334279e-04	ci right 1.000175e-03	k: 3247	n:3360000
Cons ci ratio: 1.045760e-03	ci left: 8.065967e-01	ci right 8.074409e-01	k: 2711584	n:3360000
KS ci ratio: 1.379739e-01	ci left: 2.236058e-04	ci right 2.570273e-04	k: 806	n:3360000
CDH15   3360000 perm   4727 sec   (711 perm/sec)   p_kst 2.398810e-04   p_cons 8.070190e-01   p_joint 9.663690e-04

Joint ci ratio: 6.859100e-02	ci left: 9.350327e-04	ci right 1.001735e-03	k: 3262	n:3370000
Cons ci ratio: 1.044126e-03	ci left: 8.066213e-01	ci right 8.074642e-01	k: 2719735	n:3370000
KS ci ratio: 1.376332e-01	ci left: 2.240883e-04	ci right 2.574925e-04	k: 810	n:3370000
CDH15   3370000 perm   4753 sec   (709 perm/sec)   p_kst 2.403561e-04   p_cons 8.070430e-01   p_joint 9.679525e-04

Joint ci ratio: 6.851757e-02	ci left: 9.343019e-04	ci right 1.000877e-03	k: 3269	n:3380000
Cons ci ratio: 1.042609e-03	ci left: 8.066135e-01	ci right 8.074552e-01	k: 2727777	n:3380000
KS ci ratio: 1.374638e-01	ci left: 2.239967e-04	ci right 2.573427e-04	k: 812	n:3380000
CDH15   3380000 perm   4778 sec   (707 perm/sec)   p_kst 2.402367e-04   p_cons 8.070346e-01   p_joint 9.671598e-04

Joint ci ratio: 6.840260e-02	ci left: 9.347351e-04	ci right 1.001225e-03	k: 3280	n:3390000
Cons ci ratio: 1.041129e-03	ci left: 8.065963e-01	ci right 8.074368e-01	k: 2735787	n:3390000
KS ci ratio: 1.372951e-01	ci left: 2.239056e-04	ci right 2.571938e-04	k: 814	n:3390000
CDH15   3390000 perm   4804 sec   (706 perm/sec)   p_kst 2.401180e-04   p_cons 8.070168e-01   p_joint 9.675516e-04

Joint ci ratio: 6.836100e-02	ci left: 9.331422e-04	ci right 9.994771e-04	k: 3284	n:3400000
Cons ci ratio: 1.039589e-03	ci left: 8.065995e-01	ci right 8.074388e-01	k: 2743866	n:3400000
KS ci ratio: 1.372110e-01	ci left: 2.235311e-04	ci right 2.567416e-04	k: 815	n:3400000
CDH15   3400000 perm   4830 sec   (704 perm/sec)   p_kst 2.397059e-04   p_cons 8.070194e-01   p_joint 9.658824e-04

Joint ci ratio: 6.822610e-02	ci left: 9.341530e-04	ci right 1.000423e-03	k: 3297	n:3410000
Cons ci ratio: 1.038068e-03	ci left: 8.065986e-01	ci right 8.074366e-01	k: 2751931	n:3410000
KS ci ratio: 1.370431e-01	ci left: 2.234420e-04	ci right 2.565953e-04	k: 817	n:3410000
CDH15   3410000 perm   4883 sec   (698 perm/sec)   p_kst 2.395894e-04   p_cons 8.070179e-01   p_joint 9.668622e-04

Joint ci ratio: 6.814352e-02	ci left: 9.337208e-04	ci right 9.998773e-04	k: 3305	n:3420000
Cons ci ratio: 1.036568e-03	ci left: 8.065936e-01	ci right 8.074304e-01	k: 2759982	n:3420000
KS ci ratio: 1.368759e-01	ci left: 2.233534e-04	ci right 2.564498e-04	k: 819	n:3420000
CDH15   3420000 perm   4927 sec   (694 perm/sec)   p_kst 2.394737e-04   p_cons 8.070123e-01   p_joint 9.663743e-04

Joint ci ratio: 6.806124e-02	ci left: 9.332912e-04	ci right 9.993343e-04	k: 3313	n:3430000
Cons ci ratio: 1.035061e-03	ci left: 8.065927e-01	ci right 8.074283e-01	k: 2768047	n:3430000
KS ci ratio: 1.366262e-01	ci left: 2.235469e-04	ci right 2.566067e-04	k: 822	n:3430000
CDH15   3430000 perm   4954 sec   (692 perm/sec)   p_kst 2.396501e-04   p_cons 8.070108e-01   p_joint 9.658892e-04

Joint ci ratio: 6.796901e-02	ci left: 9.331500e-04	ci right 9.990900e-04	k: 3322	n:3440000
Cons ci ratio: 1.033591e-03	ci left: 8.065826e-01	ci right 8.074169e-01	k: 2776080	n:3440000
KS ci ratio: 1.363778e-01	ci left: 2.237394e-04	ci right 2.567626e-04	k: 825	n:3440000
CDH15   3440000 perm   5004 sec   (688 perm/sec)   p_kst 2.398256e-04   p_cons 8.070000e-01   p_joint 9.656977e-04

Joint ci ratio: 6.787716e-02	ci left: 9.330096e-04	ci right 9.988471e-04	k: 3331	n:3450000
Cons ci ratio: 1.032075e-03	ci left: 8.065884e-01	ci right 8.074215e-01	k: 2784168	n:3450000
KS ci ratio: 1.363779e-01	ci left: 2.230909e-04	ci right 2.560184e-04	k: 825	n:3450000
CDH15   3450000 perm   5033 sec   (685 perm/sec)   p_kst 2.391304e-04   p_cons 8.070052e-01   p_joint 9.655072e-04

Joint ci ratio: 6.778568e-02	ci left: 9.328700e-04	ci right 9.986056e-04	k: 3340	n:3460000
Cons ci ratio: 1.030532e-03	ci left: 8.066043e-01	ci right 8.074362e-01	k: 2792291	n:3460000
KS ci ratio: 1.362131e-01	ci left: 2.230044e-04	ci right 2.558762e-04	k: 827	n:3460000
CDH15   3460000 perm   5060 sec   (684 perm/sec)   p_kst 2.390173e-04   p_cons 8.070205e-01   p_joint 9.653179e-04

Joint ci ratio: 6.769457e-02	ci left: 9.327314e-04	ci right 9.983653e-04	k: 3349	n:3470000
Cons ci ratio: 1.029032e-03	ci left: 8.066092e-01	ci right 8.074399e-01	k: 2800376	n:3470000
KS ci ratio: 1.359670e-01	ci left: 2.231969e-04	ci right 2.560328e-04	k: 830	n:3470000
CDH15   3470000 perm   5086 sec   (682 perm/sec)   p_kst 2.391931e-04   p_cons 8.070248e-01   p_joint 9.651297e-04

Joint ci ratio: 6.761391e-02	ci left: 9.323111e-04	ci right 9.978342e-04	k: 3357	n:3480000
Cons ci ratio: 1.027591e-03	ci left: 8.065979e-01	ci right 8.074275e-01	k: 2808405	n:3480000
KS ci ratio: 1.359670e-01	ci left: 2.225555e-04	ci right 2.552970e-04	k: 830	n:3480000
CDH15   3480000 perm   5112 sec   (681 perm/sec)   p_kst 2.385057e-04   p_cons 8.070129e-01   p_joint 9.646552e-04

Joint ci ratio: 6.757373e-02	ci left: 9.307664e-04	ci right 9.961406e-04	k: 3361	n:3490000
Cons ci ratio: 1.026091e-03	ci left: 8.066068e-01	ci right 8.074351e-01	k: 2816504	n:3490000
KS ci ratio: 1.358037e-01	ci left: 2.224714e-04	ci right 2.551581e-04	k: 832	n:3490000
CDH15   3490000 perm   5138 sec   (679 perm/sec)   p_kst 2.383954e-04   p_cons 8.070212e-01   p_joint 9.630372e-04

Joint ci ratio: 6.761409e-02	ci left: 9.269835e-04	ci right 9.921324e-04	k: 3357	n:3500000
Cons ci ratio: 1.024646e-03	ci left: 8.066007e-01	ci right 8.074279e-01	k: 2824551	n:3500000
KS ci ratio: 1.357223e-01	ci left: 2.221117e-04	ci right 2.547245e-04	k: 833	n:3500000
CDH15   3500000 perm   5185 sec   (675 perm/sec)   p_kst 2.380000e-04   p_cons 8.070146e-01   p_joint 9.591429e-04

Joint ci ratio: 6.777600e-02	ci left: 9.198612e-04	ci right 9.846704e-04	k: 3341	n:3510000
Cons ci ratio: 1.023157e-03	ci left: 8.066098e-01	ci right 8.074358e-01	k: 2832651	n:3510000
KS ci ratio: 1.353980e-01	ci left: 2.225799e-04	ci right 2.551770e-04	k: 837	n:3510000
CDH15   3510000 perm   5240 sec   (670 perm/sec)   p_kst 2.384615e-04   p_cons 8.070231e-01   p_joint 9.518519e-04

Joint ci ratio: 6.764453e-02	ci left: 9.208786e-04	ci right 9.856287e-04	k: 3354	n:3520000
Cons ci ratio: 1.021679e-03	ci left: 8.066177e-01	ci right 8.074425e-01	k: 2840747	n:3520000
KS ci ratio: 1.351562e-01	ci left: 2.227710e-04	ci right 2.553331e-04	k: 840	n:3520000
CDH15   3520000 perm   5285 sec   (666 perm/sec)   p_kst 2.386364e-04   p_cons 8.070304e-01   p_joint 9.528409e-04

Joint ci ratio: 6.755399e-02	ci left: 9.207764e-04	ci right 9.854292e-04	k: 3363	n:3530000
Cons ci ratio: 1.020290e-03	ci left: 8.066001e-01	ci right 8.074238e-01	k: 2848753	n:3530000
KS ci ratio: 1.349958e-01	ci left: 2.226874e-04	ci right 2.551955e-04	k: 842	n:3530000
CDH15   3530000 perm   5313 sec   (664 perm/sec)   p_kst 2.385269e-04   p_cons 8.070122e-01   p_joint 9.526912e-04

Joint ci ratio: 6.550991e-02	ci left: 9.773450e-04	ci right 1.043815e-03	k: 3576	n:3540000
Cons ci ratio: 1.018781e-03	ci left: 8.066213e-01	ci right 8.074437e-01	k: 2856896	n:3540000
KS ci ratio: 1.346767e-01	ci left: 2.231501e-04	ci right 2.556426e-04	k: 846	n:3540000
CDH15   3540000 perm   5340 sec   (663 perm/sec)   p_kst 2.389831e-04   p_cons 8.070328e-01   p_joint 1.010169e-03

Joint ci ratio: 6.541853e-02	ci left: 9.773627e-04	ci right 1.043737e-03	k: 3586	n:3550000
Cons ci ratio: 1.017347e-03	ci left: 8.066212e-01	ci right 8.074425e-01	k: 2864964	n:3550000
KS ci ratio: 1.345973e-01	ci left: 2.227937e-04	ci right 2.552137e-04	k: 847	n:3550000
CDH15   3550000 perm   5367 sec   (661 perm/sec)   p_kst 2.385915e-04   p_cons 8.070321e-01   p_joint 1.010141e-03

Joint ci ratio: 6.534572e-02	ci left: 9.768277e-04	ci right 1.043089e-03	k: 3594	n:3560000
Cons ci ratio: 1.015940e-03	ci left: 8.066147e-01	ci right 8.074348e-01	k: 2873009	n:3560000
KS ci ratio: 1.344388e-01	ci left: 2.227108e-04	ci right 2.550775e-04	k: 849	n:3560000
CDH15   3560000 perm   5394 sec   (660 perm/sec)   p_kst 2.384831e-04   p_cons 8.070250e-01   p_joint 1.009551e-03

Joint ci ratio: 6.529130e-02	ci left: 9.757447e-04	ci right 1.041876e-03	k: 3600	n:3570000
Cons ci ratio: 1.014552e-03	ci left: 8.066042e-01	ci right 8.074233e-01	k: 2881040	n:3570000
KS ci ratio: 1.342809e-01	ci left: 2.226284e-04	ci right 2.549420e-04	k: 851	n:3570000
CDH15   3570000 perm   5421 sec   (659 perm/sec)   p_kst 2.383754e-04   p_cons 8.070140e-01   p_joint 1.008403e-03

Joint ci ratio: 6.514667e-02	ci left: 9.774156e-04	ci right 1.043508e-03	k: 3616	n:3580000
Cons ci ratio: 1.013131e-03	ci left: 8.066059e-01	ci right 8.074238e-01	k: 2889114	n:3580000
KS ci ratio: 1.340451e-01	ci left: 2.228164e-04	ci right 2.550960e-04	k: 854	n:3580000
CDH15   3580000 perm   5447 sec   (657 perm/sec)   p_kst 2.385475e-04   p_cons 8.070151e-01   p_joint 1.010056e-03

Joint ci ratio: 6.511074e-02	ci left: 9.757890e-04	ci right 1.041733e-03	k: 3620	n:3590000
Cons ci ratio: 1.011750e-03	ci left: 8.065967e-01	ci right 8.074134e-01	k: 2897149	n:3590000
KS ci ratio: 1.340452e-01	ci left: 2.221957e-04	ci right 2.543854e-04	k: 854	n:3590000
CDH15   3590000 perm   5474 sec   (656 perm/sec)   p_kst 2.378830e-04   p_cons 8.070053e-01   p_joint 1.008357e-03

Joint ci ratio: 6.503895e-02	ci left: 9.752645e-04	ci right 1.041098e-03	k: 3628	n:3600000
Cons ci ratio: 1.010330e-03	ci left: 8.066017e-01	ci right 8.074173e-01	k: 2905235	n:3600000
KS ci ratio: 1.338106e-01	ci left: 2.223839e-04	ci right 2.545401e-04	k: 857	n:3600000
CDH15   3600000 perm   5502 sec   (654 perm/sec)   p_kst 2.380556e-04   p_cons 8.070097e-01   p_joint 1.007778e-03

Joint ci ratio: 6.492274e-02	ci left: 9.761056e-04	ci right 1.041874e-03	k: 3641	n:3610000
Cons ci ratio: 1.008918e-03	ci left: 8.066058e-01	ci right 8.074203e-01	k: 2913318	n:3610000
KS ci ratio: 1.334998e-01	ci left: 2.228389e-04	ci right 2.549800e-04	k: 861	n:3610000
CDH15   3610000 perm   5528 sec   (653 perm/sec)   p_kst 2.385042e-04   p_cons 8.070133e-01   p_joint 1.008587e-03

Joint ci ratio: 6.535537e-02	ci left: 9.603652e-04	ci right 1.025520e-03	k: 3593	n:3620000
Cons ci ratio: 1.007480e-03	ci left: 8.066199e-01	ci right 8.074332e-01	k: 2921437	n:3620000
KS ci ratio: 1.334224e-01	ci left: 2.224903e-04	ci right 2.545611e-04	k: 862	n:3620000
CDH15   3620000 perm   5556 sec   (652 perm/sec)   p_kst 2.381215e-04   p_cons 8.070268e-01   p_joint 9.925414e-04

Joint ci ratio: 6.524652e-02	ci left: 9.609714e-04	ci right 1.026055e-03	k: 3605	n:3630000
Cons ci ratio: 1.006113e-03	ci left: 8.066138e-01	ci right 8.074260e-01	k: 2929483	n:3630000
KS ci ratio: 1.333452e-01	ci left: 2.221437e-04	ci right 2.541445e-04	k: 863	n:3630000
CDH15   3630000 perm   5583 sec   (650 perm/sec)   p_kst 2.377410e-04   p_cons 8.070201e-01   p_joint 9.931129e-04

Joint ci ratio: 6.515623e-02	ci left: 9.610338e-04	ci right 1.026028e-03	k: 3615	n:3640000
Cons ci ratio: 1.004749e-03	ci left: 8.066082e-01	ci right 8.074193e-01	k: 2937531	n:3640000
KS ci ratio: 1.331912e-01	ci left: 2.220645e-04	ci right 2.540141e-04	k: 865	n:3640000
CDH15   3640000 perm   5610 sec   (649 perm/sec)   p_kst 2.376374e-04   p_cons 8.070140e-01   p_joint 9.931319e-04

Joint ci ratio: 6.507531e-02	ci left: 9.608265e-04	ci right 1.025723e-03	k: 3624	n:3650000
Cons ci ratio: 1.003356e-03	ci left: 8.066137e-01	ci right 8.074237e-01	k: 2945619	n:3650000
KS ci ratio: 1.330376e-01	ci left: 2.219858e-04	ci right 2.538843e-04	k: 867	n:3650000
CDH15   3650000 perm   5637 sec   (647 perm/sec)   p_kst 2.375342e-04   p_cons 8.070189e-01   p_joint 9.928767e-04

Joint ci ratio: 6.500364e-02	ci left: 9.603515e-04	ci right 1.025142e-03	k: 3632	n:3660000
Cons ci ratio: 1.002025e-03	ci left: 8.066016e-01	ci right 8.074105e-01	k: 2953643	n:3660000
KS ci ratio: 1.328846e-01	ci left: 2.219076e-04	ci right 2.537553e-04	k: 869	n:3660000
CDH15   3660000 perm   5665 sec   (646 perm/sec)   p_kst 2.374317e-04   p_cons 8.070063e-01   p_joint 9.923497e-04

Joint ci ratio: 6.515650e-02	ci left: 9.531778e-04	ci right 1.017641e-03	k: 3615	n:3670000
Cons ci ratio: 1.000629e-03	ci left: 8.066117e-01	ci right 8.074195e-01	k: 2961748	n:3670000
KS ci ratio: 1.327322e-01	ci left: 2.218298e-04	ci right 2.536269e-04	k: 871	n:3670000
CDH15   3670000 perm   5692 sec   (645 perm/sec)   p_kst 2.373297e-04   p_cons 8.070158e-01   p_joint 9.850136e-04

Joint ci ratio: 6.508456e-02	ci left: 9.527262e-04	ci right 1.017085e-03	k: 3623	n:3680000
Cons ci ratio: 9.993189e-04	ci left: 8.065964e-01	ci right 8.074031e-01	k: 2969760	n:3680000
KS ci ratio: 1.325044e-01	ci left: 2.220151e-04	ci right 2.537799e-04	k: 874	n:3680000
CDH15   3680000 perm   5719 sec   (644 perm/sec)   p_kst 2.375000e-04   p_cons 8.070000e-01   p_joint 9.845109e-04

Joint ci ratio: 6.498600e-02	ci left: 9.530768e-04	ci right 1.017358e-03	k: 3634	n:3690000
Cons ci ratio: 9.979465e-04	ci left: 8.066024e-01	ci right 8.074080e-01	k: 2977850	n:3690000
KS ci ratio: 1.322026e-01	ci left: 2.224616e-04	ci right 2.542121e-04	k: 878	n:3690000
CDH15   3690000 perm   5746 sec   (642 perm/sec)   p_kst 2.379404e-04   p_cons 8.070054e-01   p_joint 9.848238e-04

Joint ci ratio: 6.487007e-02	ci left: 9.539574e-04	ci right 1.018179e-03	k: 3647	n:3700000
Cons ci ratio: 9.966265e-04	ci left: 8.065937e-01	ci right 8.073982e-01	k: 2985886	n:3700000
KS ci ratio: 1.319775e-01	ci left: 2.226444e-04	ci right 2.543626e-04	k: 881	n:3700000
CDH15   3700000 perm   5773 sec   (641 perm/sec)   p_kst 2.381081e-04   p_cons 8.069962e-01   p_joint 9.856757e-04

Joint ci ratio: 6.479021e-02	ci left: 9.537727e-04	ci right 1.017900e-03	k: 3656	n:3710000
Cons ci ratio: 9.952643e-04	ci left: 8.065999e-01	ci right 8.074034e-01	k: 2993977	n:3710000
KS ci ratio: 1.316050e-01	ci left: 2.233475e-04	ci right 2.550691e-04	k: 886	n:3710000
CDH15   3710000 perm   5801 sec   (639 perm/sec)   p_kst 2.388140e-04   p_cons 8.070019e-01   p_joint 9.854447e-04

Joint ci ratio: 6.469298e-02	ci left: 9.541179e-04	ci right 1.018168e-03	k: 3667	n:3720000
Cons ci ratio: 9.938734e-04	ci left: 8.066169e-01	ci right 8.074192e-01	k: 3002108	n:3720000
KS ci ratio: 1.314569e-01	ci left: 2.232671e-04	ci right 2.549387e-04	k: 888	n:3720000
CDH15   3720000 perm   5829 sec   (638 perm/sec)   p_kst 2.387097e-04   p_cons 8.070183e-01   p_joint 9.857527e-04

Joint ci ratio: 6.461376e-02	ci left: 9.539338e-04	ci right 1.017891e-03	k: 3676	n:3730000
Cons ci ratio: 9.924968e-04	ci left: 8.066311e-01	ci right 8.074323e-01	k: 3010229	n:3730000
KS ci ratio: 1.313092e-01	ci left: 2.231871e-04	ci right 2.548091e-04	k: 890	n:3730000
CDH15   3730000 perm   5857 sec   (637 perm/sec)   p_kst 2.386059e-04   p_cons 8.070319e-01   p_joint 9.855228e-04

Joint ci ratio: 6.158633e-02	ci left: 1.048755e-03	ci right 1.115657e-03	k: 4046	n:3740000
Cons ci ratio: 9.911565e-04	ci left: 8.066355e-01	ci right 8.074357e-01	k: 3018314	n:3740000
KS ci ratio: 1.311621e-01	ci left: 2.231075e-04	ci right 2.546801e-04	k: 892	n:3740000
CDH15   3740000 perm   5885 sec   (635 perm/sec)   p_kst 2.385027e-04   p_cons 8.070358e-01   p_joint 1.081818e-03

Joint ci ratio: 6.210319e-02	ci left: 1.028368e-03	ci right 1.094540e-03	k: 3979	n:3750000
Cons ci ratio: 9.898217e-04	ci left: 8.066400e-01	ci right 8.074390e-01	k: 3026399	n:3750000
KS ci ratio: 1.309423e-01	ci left: 2.232863e-04	ci right 2.548271e-04	k: 895	n:3750000
CDH15   3750000 perm   5913 sec   (634 perm/sec)   p_kst 2.386667e-04   p_cons 8.070397e-01   p_joint 1.061067e-03

Joint ci ratio: 6.203310e-02	ci left: 1.027989e-03	ci right 1.094060e-03	k: 3988	n:3760000
Cons ci ratio: 9.884728e-04	ci left: 8.066505e-01	ci right 8.074485e-01	k: 3034507	n:3760000
KS ci ratio: 1.305785e-01	ci left: 2.239788e-04	ci right 2.555226e-04	k: 900	n:3760000
CDH15   3760000 perm   5942 sec   (633 perm/sec)   p_kst 2.393617e-04   p_cons 8.070497e-01   p_joint 1.060638e-03

Joint ci ratio: 6.195550e-02	ci left: 1.027874e-03	ci right 1.093851e-03	k: 3998	n:3770000
Cons ci ratio: 9.871093e-04	ci left: 8.066674e-01	ci right 8.074643e-01	k: 3042639	n:3770000
KS ci ratio: 1.302176e-01	ci left: 2.246677e-04	ci right 2.562144e-04	k: 905	n:3770000
CDH15   3770000 perm   5970 sec   (632 perm/sec)   p_kst 2.400531e-04   p_cons 8.070660e-01   p_joint 1.060477e-03

Joint ci ratio: 6.184730e-02	ci left: 1.028801e-03	ci right 1.094718e-03	k: 4012	n:3780000
Cons ci ratio: 9.857740e-04	ci left: 8.066770e-01	ci right 8.074728e-01	k: 3050744	n:3780000
KS ci ratio: 1.300741e-01	ci left: 2.245852e-04	ci right 2.560829e-04	k: 907	n:3780000
CDH15   3780000 perm   5999 sec   (630 perm/sec)   p_kst 2.399471e-04   p_cons 8.070751e-01   p_joint 1.061376e-03

Joint ci ratio: 6.177808e-02	ci left: 1.028424e-03	ci right 1.094241e-03	k: 4021	n:3790000
Cons ci ratio: 9.844866e-04	ci left: 8.066731e-01	ci right 8.074679e-01	k: 3058798	n:3790000
KS ci ratio: 1.297174e-01	ci left: 2.252690e-04	ci right 2.567693e-04	k: 912	n:3790000
CDH15   3790000 perm   6027 sec   (629 perm/sec)   p_kst 2.406332e-04   p_cons 8.070707e-01   p_joint 1.060950e-03

Joint ci ratio: 6.264963e-02	ci left: 9.969614e-04	ci right 1.061697e-03	k: 3910	n:3800000
Cons ci ratio: 9.832200e-04	ci left: 8.066642e-01	ci right 8.074580e-01	k: 3066833	n:3800000
KS ci ratio: 1.294342e-01	ci left: 2.256947e-04	ci right 2.571803e-04	k: 916	n:3800000
CDH15   3800000 perm   6056 sec   (627 perm/sec)   p_kst 2.410526e-04   p_cons 8.070613e-01   p_joint 1.028947e-03

Joint ci ratio: 6.277032e-02	ci left: 9.904694e-04	ci right 1.054912e-03	k: 3895	n:3810000
Cons ci ratio: 9.819004e-04	ci left: 8.066738e-01	ci right 8.074665e-01	k: 3074938	n:3810000
KS ci ratio: 1.292230e-01	ci left: 2.258643e-04	ci right 2.573182e-04	k: 919	n:3810000
CDH15   3810000 perm   6085 sec   (626 perm/sec)   p_kst 2.412073e-04   p_cons 8.070703e-01   p_joint 1.022310e-03

Joint ci ratio: 6.269796e-02	ci left: 9.901956e-04	ci right 1.054544e-03	k: 3904	n:3820000
Cons ci ratio: 9.806660e-04	ci left: 8.066578e-01	ci right 8.074495e-01	k: 3082946	n:3820000
KS ci ratio: 1.288732e-01	ci left: 2.265397e-04	ci right 2.579957e-04	k: 924	n:3820000
CDH15   3820000 perm   6113 sec   (625 perm/sec)   p_kst 2.418848e-04   p_cons 8.070539e-01   p_joint 1.021990e-03

Joint ci ratio: 6.307918e-02	ci left: 9.755314e-04	ci right 1.039326e-03	k: 3857	n:3830000
Cons ci ratio: 9.794404e-04	ci left: 8.066407e-01	ci right 8.074314e-01	k: 3090949	n:3830000
KS ci ratio: 1.286647e-01	ci left: 2.267062e-04	ci right 2.581306e-04	k: 927	n:3830000
CDH15   3830000 perm   6141 sec   (624 perm/sec)   p_kst 2.420366e-04   p_cons 8.070363e-01   p_joint 1.007050e-03

Joint ci ratio: 6.299759e-02	ci left: 9.755541e-04	ci right 1.039265e-03	k: 3867	n:3840000
Cons ci ratio: 9.781425e-04	ci left: 8.066482e-01	ci right 8.074378e-01	k: 3099046	n:3840000
KS ci ratio: 1.284572e-01	ci left: 2.268720e-04	ci right 2.582647e-04	k: 930	n:3840000
CDH15   3840000 perm   6170 sec   (622 perm/sec)   p_kst 2.421875e-04   p_cons 8.070432e-01   p_joint 1.007031e-03

Joint ci ratio: 6.293256e-02	ci left: 9.750654e-04	ci right 1.038676e-03	k: 3875	n:3850000
Cons ci ratio: 9.769043e-04	ci left: 8.066382e-01	ci right 8.074268e-01	k: 3107076	n:3850000
KS ci ratio: 1.283883e-01	ci left: 2.265341e-04	ci right 2.578620e-04	k: 931	n:3850000
CDH15   3850000 perm   6199 sec   (621 perm/sec)   p_kst 2.418182e-04   p_cons 8.070327e-01   p_joint 1.006494e-03

Joint ci ratio: 6.288394e-02	ci left: 9.740692e-04	ci right 1.037564e-03	k: 3881	n:3860000
Cons ci ratio: 9.756342e-04	ci left: 8.066399e-01	ci right 8.074275e-01	k: 3115151	n:3860000
KS ci ratio: 1.281822e-01	ci left: 2.266995e-04	ci right 2.579961e-04	k: 934	n:3860000
CDH15   3860000 perm   6227 sec   (620 perm/sec)   p_kst 2.419689e-04   p_cons 8.070339e-01   p_joint 1.005440e-03

Joint ci ratio: 6.281926e-02	ci left: 9.735869e-04	ci right 1.036983e-03	k: 3889	n:3870000
Cons ci ratio: 9.743877e-04	ci left: 8.066357e-01	ci right 8.074223e-01	k: 3123203	n:3870000
KS ci ratio: 1.280453e-01	ci left: 2.266139e-04	ci right 2.578628e-04	k: 936	n:3870000
CDH15   3870000 perm   6256 sec   (619 perm/sec)   p_kst 2.418605e-04   p_cons 8.070292e-01   p_joint 1.004910e-03

Joint ci ratio: 6.274673e-02	ci left: 9.733609e-04	ci right 1.036666e-03	k: 3898	n:3880000
Cons ci ratio: 9.730711e-04	ci left: 8.066554e-01	ci right 8.074410e-01	k: 3131348	n:3880000
KS ci ratio: 1.279089e-01	ci left: 2.265288e-04	ci right 2.577301e-04	k: 938	n:3880000
CDH15   3880000 perm   6285 sec   (617 perm/sec)   p_kst 2.417526e-04   p_cons 8.070485e-01   p_joint 1.004639e-03

Joint ci ratio: 6.262634e-02	ci left: 9.746543e-04	ci right 1.037917e-03	k: 3913	n:3890000
Cons ci ratio: 9.718264e-04	ci left: 8.066538e-01	ci right 8.074383e-01	k: 3139410	n:3890000
KS ci ratio: 1.275696e-01	ci left: 2.271908e-04	ci right 2.583940e-04	k: 943	n:3890000
CDH15   3890000 perm   6314 sec   (616 perm/sec)   p_kst 2.424165e-04   p_cons 8.070463e-01   p_joint 1.005913e-03

Joint ci ratio: 6.258641e-02	ci left: 9.734171e-04	ci right 1.036558e-03	k: 3918	n:3900000
Cons ci ratio: 9.705393e-04	ci left: 8.066672e-01	ci right 8.074508e-01	k: 3147531	n:3900000
KS ci ratio: 1.274347e-01	ci left: 2.271047e-04	ci right 2.582606e-04	k: 945	n:3900000
CDH15   3900000 perm   6343 sec   (615 perm/sec)   p_kst 2.423077e-04   p_cons 8.070592e-01   p_joint 1.004615e-03

Joint ci ratio: 6.251468e-02	ci left: 9.731934e-04	ci right 1.036245e-03	k: 3927	n:3910000
Cons ci ratio: 9.692947e-04	ci left: 8.066686e-01	ci right 8.074511e-01	k: 3155605	n:3910000
KS ci ratio: 1.273002e-01	ci left: 2.270191e-04	ci right 2.581279e-04	k: 947	n:3910000
CDH15   3910000 perm   6372 sec   (614 perm/sec)   p_kst 2.421995e-04   p_cons 8.070601e-01   p_joint 1.004348e-03

Joint ci ratio: 6.241939e-02	ci left: 9.737241e-04	ci right 1.036711e-03	k: 3939	n:3920000
Cons ci ratio: 9.680104e-04	ci left: 8.066843e-01	ci right 8.074658e-01	k: 3163735	n:3920000
KS ci ratio: 1.272332e-01	ci left: 2.266869e-04	ci right 2.577326e-04	k: 948	n:3920000
CDH15   3920000 perm   6402 sec   (612 perm/sec)   p_kst 2.418367e-04   p_cons 8.070753e-01   p_joint 1.004847e-03

Joint ci ratio: 6.233243e-02	ci left: 9.740018e-04	ci right 1.036915e-03	k: 3950	n:3930000
Cons ci ratio: 9.668316e-04	ci left: 8.066675e-01	ci right 8.074481e-01	k: 3171738	n:3930000
KS ci ratio: 1.270993e-01	ci left: 2.266028e-04	ci right 2.576019e-04	k: 950	n:3930000
CDH15   3930000 perm   6431 sec   (611 perm/sec)   p_kst 2.417303e-04   p_cons 8.070580e-01   p_joint 1.005089e-03

Joint ci ratio: 6.216735e-02	ci left: 9.767768e-04	ci right 1.039696e-03	k: 3971	n:3940000
Cons ci ratio: 9.655744e-04	ci left: 8.066775e-01	ci right 8.074570e-01	k: 3179846	n:3940000
KS ci ratio: 1.265680e-01	ci left: 2.279937e-04	ci right 2.590429e-04	k: 958	n:3940000
CDH15   3940000 perm   6460 sec   (610 perm/sec)   p_kst 2.431472e-04   p_cons 8.070675e-01   p_joint 1.007868e-03

Joint ci ratio: 6.210486e-02	ci left: 9.762977e-04	ci right 1.039121e-03	k: 3979	n:3950000
Cons ci ratio: 9.643457e-04	ci left: 8.066799e-01	ci right 8.074584e-01	k: 3187924	n:3950000
KS ci ratio: 1.265680e-01	ci left: 2.274165e-04	ci right 2.583871e-04	k: 958	n:3950000
CDH15   3950000 perm   6490 sec   (609 perm/sec)   p_kst 2.425316e-04   p_cons 8.070694e-01   p_joint 1.007342e-03

Joint ci ratio: 6.205034e-02	ci left: 9.755726e-04	ci right 1.038292e-03	k: 3986	n:3960000
Cons ci ratio: 9.631216e-04	ci left: 8.066822e-01	ci right 8.074598e-01	k: 3196002	n:3960000
KS ci ratio: 1.265021e-01	ci left: 2.270868e-04	ci right 2.579951e-04	k: 959	n:3960000
CDH15   3960000 perm   6519 sec   (608 perm/sec)   p_kst 2.421717e-04   p_cons 8.070712e-01   p_joint 1.006566e-03

Joint ci ratio: 6.194165e-02	ci left: 9.765870e-04	ci right 1.039258e-03	k: 4000	n:3970000
Cons ci ratio: 9.618586e-04	ci left: 8.066987e-01	ci right 8.074752e-01	k: 3204136	n:3970000
KS ci ratio: 1.263049e-01	ci left: 2.272466e-04	ci right 2.581248e-04	k: 962	n:3970000
CDH15   3970000 perm   6548 sec   (606 perm/sec)   p_kst 2.423174e-04   p_cons 8.070872e-01   p_joint 1.007557e-03

Joint ci ratio: 6.183353e-02	ci left: 9.775964e-04	ci right 1.040219e-03	k: 4014	n:3980000
Cons ci ratio: 9.606649e-04	ci left: 8.066942e-01	ci right 8.074697e-01	k: 3212187	n:3980000
KS ci ratio: 1.260434e-01	ci left: 2.276489e-04	ci right 2.585130e-04	k: 966	n:3980000
CDH15   3980000 perm   6577 sec   (605 perm/sec)   p_kst 2.427136e-04   p_cons 8.070822e-01   p_joint 1.008543e-03

Joint ci ratio: 6.176436e-02	ci left: 9.773671e-04	ci right 1.039902e-03	k: 4023	n:3990000
Cons ci ratio: 9.594926e-04	ci left: 8.066841e-01	ci right 8.074588e-01	k: 3220216	n:3990000
KS ci ratio: 1.259783e-01	ci left: 2.273211e-04	ci right 2.581236e-04	k: 967	n:3990000
CDH15   3990000 perm   6607 sec   (604 perm/sec)   p_kst 2.423559e-04   p_cons 8.070717e-01   p_joint 1.008271e-03

Joint ci ratio: 6.194189e-02	ci left: 9.692625e-04	ci right 1.031463e-03	k: 4000	n:4000000
Cons ci ratio: 9.583553e-04	ci left: 8.066642e-01	ci right 8.074379e-01	k: 3228205	n:4000000
KS ci ratio: 1.257188e-01	ci left: 2.277213e-04	ci right 2.585098e-04	k: 971	n:4000000
CDH15   4000000 perm   6637 sec   (603 perm/sec)   p_kst 2.427500e-04   p_cons 8.070512e-01   p_joint 1.000000e-03

Joint ci ratio: 6.184919e-02	ci left: 9.697916e-04	ci right 1.031930e-03	k: 4012	n:4010000
Cons ci ratio: 9.571592e-04	ci left: 8.066648e-01	ci right 8.074375e-01	k: 3236276	n:4010000
KS ci ratio: 1.256542e-01	ci left: 2.273949e-04	ci right 2.581223e-04	k: 972	n:4010000
CDH15   4010000 perm   6667 sec   (601 perm/sec)   p_kst 2.423940e-04   p_cons 8.070514e-01   p_joint 1.000499e-03

Joint ci ratio: 6.179534e-02	ci left: 9.690935e-04	ci right 1.031131e-03	k: 4019	n:4020000
Cons ci ratio: 9.559707e-04	ci left: 8.066644e-01	ci right 8.074362e-01	k: 3244343	n:4020000
KS ci ratio: 1.255252e-01	ci left: 2.273112e-04	ci right 2.579934e-04	k: 974	n:4020000
CDH15   4020000 perm   6696 sec   (600 perm/sec)   p_kst 2.422886e-04   p_cons 8.070505e-01   p_joint 9.997512e-04

Joint ci ratio: 6.168033e-02	ci left: 9.703535e-04	ci right 1.032352e-03	k: 4034	n:4030000
Cons ci ratio: 9.547690e-04	ci left: 8.066697e-01	ci right 8.074405e-01	k: 3252433	n:4030000
KS ci ratio: 1.253967e-01	ci left: 2.272278e-04	ci right 2.578650e-04	k: 976	n:4030000
CDH15   4030000 perm   6726 sec   (599 perm/sec)   p_kst 2.421836e-04   p_cons 8.070553e-01   p_joint 1.000993e-03

Joint ci ratio: 6.161930e-02	ci left: 9.699013e-04	ci right 1.031808e-03	k: 4042	n:4040000
Cons ci ratio: 9.536257e-04	ci left: 8.066574e-01	ci right 8.074273e-01	k: 3260452	n:4040000
KS ci ratio: 1.252685e-01	ci left: 2.271449e-04	ci right 2.577373e-04	k: 978	n:4040000
CDH15   4040000 perm   6757 sec   (598 perm/sec)   p_kst 2.420792e-04   p_cons 8.070426e-01   p_joint 1.000495e-03

Joint ci ratio: 6.177250e-02	ci left: 9.626443e-04	ci right 1.024246e-03	k: 4022	n:4050000
Cons ci ratio: 9.524306e-04	ci left: 8.066635e-01	ci right 8.074324e-01	k: 3268545	n:4050000
KS ci ratio: 1.252046e-01	ci left: 2.268232e-04	ci right 2.573556e-04	k: 979	n:4050000
CDH15   4050000 perm   6786 sec   (597 perm/sec)   p_kst 2.417284e-04   p_cons 8.070481e-01   p_joint 9.930864e-04

Joint ci ratio: 6.169587e-02	ci left: 9.626983e-04	ci right 1.024224e-03	k: 4032	n:4060000
Cons ci ratio: 9.512634e-04	ci left: 8.066619e-01	ci right 8.074298e-01	k: 3276607	n:4060000
KS ci ratio: 1.250134e-01	ci left: 2.269803e-04	ci right 2.574837e-04	k: 982	n:4060000
CDH15   4060000 perm   6816 sec   (596 perm/sec)   p_kst 2.418719e-04   p_cons 8.070461e-01   p_joint 9.931034e-04

Joint ci ratio: 6.158142e-02	ci left: 9.639616e-04	ci right 1.025450e-03	k: 4047	n:4070000
Cons ci ratio: 9.501371e-04	ci left: 8.066482e-01	ci right 8.074152e-01	k: 3284620	n:4070000
KS ci ratio: 1.248231e-01	ci left: 2.271367e-04	ci right 2.576112e-04	k: 985	n:4070000
CDH15   4070000 perm   6846 sec   (595 perm/sec)   p_kst 2.420147e-04   p_cons 8.070319e-01   p_joint 9.943489e-04

Joint ci ratio: 6.150549e-02	ci left: 9.640123e-04	ci right 1.025425e-03	k: 4057	n:4080000
Cons ci ratio: 9.489969e-04	ci left: 8.066405e-01	ci right 8.074066e-01	k: 3292657	n:4080000
KS ci ratio: 1.246967e-01	ci left: 2.270549e-04	ci right 2.574853e-04	k: 987	n:4080000
CDH15   4080000 perm   6876 sec   (593 perm/sec)   p_kst 2.419118e-04   p_cons 8.070238e-01   p_joint 9.943627e-04

Joint ci ratio: 6.143741e-02	ci left: 9.638219e-04	ci right 1.025152e-03	k: 4066	n:4090000
Cons ci ratio: 9.478317e-04	ci left: 8.066424e-01	ci right 8.074075e-01	k: 3300733	n:4090000
KS ci ratio: 1.243823e-01	ci left: 2.276842e-04	ci right 2.581163e-04	k: 992	n:4090000
CDH15   4090000 perm   6906 sec   (592 perm/sec)   p_kst 2.425428e-04   p_cons 8.070252e-01   p_joint 9.941320e-04

Joint ci ratio: 6.196590e-02	ci left: 9.449012e-04	ci right 1.005563e-03	k: 3997	n:4100000
Cons ci ratio: 9.466664e-04	ci left: 8.066457e-01	ci right 8.074099e-01	k: 3308815	n:4100000
KS ci ratio: 1.242573e-01	ci left: 2.276015e-04	ci right 2.579897e-04	k: 994	n:4100000
CDH15   4100000 perm   6937 sec   (591 perm/sec)   p_kst 2.424390e-04   p_cons 8.070280e-01   p_joint 9.748780e-04

Joint ci ratio: 6.206706e-02	ci left: 9.394881e-04	ci right 9.999046e-04	k: 3984	n:4110000
Cons ci ratio: 9.454914e-04	ci left: 8.066537e-01	ci right 8.074169e-01	k: 3316916	n:4110000
KS ci ratio: 1.241326e-01	ci left: 2.275192e-04	ci right 2.578637e-04	k: 996	n:4110000
CDH15   4110000 perm   6967 sec   (590 perm/sec)   p_kst 2.423358e-04   p_cons 8.070355e-01   p_joint 9.693431e-04

Joint ci ratio: 6.198157e-02	ci left: 9.398363e-04	ci right 1.000189e-03	k: 3995	n:4120000
Cons ci ratio: 9.443346e-04	ci left: 8.066570e-01	ci right 8.074193e-01	k: 3324998	n:4120000
KS ci ratio: 1.240704e-01	ci left: 2.272022e-04	ci right 2.574881e-04	k: 997	n:4120000
CDH15   4120000 perm   6998 sec   (589 perm/sec)   p_kst 2.419903e-04   p_cons 8.070383e-01   p_joint 9.696602e-04

Joint ci ratio: 6.188869e-02	ci left: 9.404213e-04	ci right 1.000718e-03	k: 4007	n:4130000
Cons ci ratio: 9.431440e-04	ci left: 8.066728e-01	ci right 8.074342e-01	k: 3333132	n:4130000
KS ci ratio: 1.239463e-01	ci left: 2.271213e-04	ci right 2.573639e-04	k: 999	n:4130000
CDH15   4130000 perm   7028 sec   (588 perm/sec)   p_kst 2.418886e-04   p_cons 8.070538e-01   p_joint 9.702179e-04

Joint ci ratio: 6.186560e-02	ci left: 9.388631e-04	ci right 9.990364e-04	k: 4010	n:4140000
Cons ci ratio: 9.420281e-04	ci left: 8.066654e-01	ci right 8.074259e-01	k: 3341170	n:4140000
KS ci ratio: 1.238844e-01	ci left: 2.268067e-04	ci right 2.569913e-04	k: 1000	n:4140000
CDH15   4140000 perm   7059 sec   (587 perm/sec)   p_kst 2.415459e-04   p_cons 8.070459e-01   p_joint 9.685990e-04

Joint ci ratio: 6.181170e-02	ci left: 9.382615e-04	ci right 9.983419e-04	k: 4017	n:4150000
Cons ci ratio: 9.409029e-04	ci left: 8.066624e-01	ci right 8.074220e-01	k: 3349226	n:4150000
KS ci ratio: 1.236991e-01	ci left: 2.269607e-04	ci right 2.571173e-04	k: 1003	n:4150000
CDH15   4150000 perm   7090 sec   (585 perm/sec)   p_kst 2.416867e-04   p_cons 8.070424e-01   p_joint 9.679518e-04

Joint ci ratio: 6.175795e-02	ci left: 9.376627e-04	ci right 9.976508e-04	k: 4024	n:4160000
Cons ci ratio: 9.397891e-04	ci left: 8.066570e-01	ci right 8.074157e-01	k: 3357272	n:4160000
KS ci ratio: 1.236376e-01	ci left: 2.266481e-04	ci right 2.567470e-04	k: 1004	n:4160000
CDH15   4160000 perm   7121 sec   (584 perm/sec)   p_kst 2.413462e-04   p_cons 8.070365e-01   p_joint 9.673077e-04

Joint ci ratio: 6.165079e-02	ci left: 9.387197e-04	ci right 9.986674e-04	k: 4038	n:4170000
Cons ci ratio: 9.386698e-04	ci left: 8.066547e-01	ci right 8.074125e-01	k: 3365331	n:4170000
KS ci ratio: 1.235148e-01	ci left: 2.265693e-04	ci right 2.566258e-04	k: 1006	n:4170000
CDH15   4170000 perm   7151 sec   (583 perm/sec)   p_kst 2.412470e-04   p_cons 8.070338e-01   p_joint 9.683453e-04

Joint ci ratio: 6.183503e-02	ci left: 9.308208e-04	ci right 9.904481e-04	k: 4014	n:4180000
Cons ci ratio: 9.374976e-04	ci left: 8.066714e-01	ci right 8.074282e-01	k: 3373469	n:4180000
KS ci ratio: 1.234535e-01	ci left: 2.262592e-04	ci right 2.562585e-04	k: 1007	n:4180000
CDH15   4180000 perm   7181 sec   (582 perm/sec)   p_kst 2.409091e-04   p_cons 8.070500e-01   p_joint 9.602871e-04

Joint ci ratio: 6.177353e-02	ci left: 9.304791e-04	ci right 9.900231e-04	k: 4022	n:4190000
Cons ci ratio: 9.364158e-04	ci left: 8.066593e-01	ci right 8.074152e-01	k: 3381487	n:4190000
KS ci ratio: 1.233923e-01	ci left: 2.259504e-04	ci right 2.558929e-04	k: 1008	n:4190000
CDH15   4190000 perm   7213 sec   (581 perm/sec)   p_kst 2.405728e-04   p_cons 8.070375e-01   p_joint 9.599045e-04

Joint ci ratio: 6.165865e-02	ci left: 9.317800e-04	ci right 9.912924e-04	k: 4037	n:4200000
Cons ci ratio: 9.352892e-04	ci left: 8.066635e-01	ci right 8.074185e-01	k: 3389573	n:4200000
KS ci ratio: 1.232702e-01	ci left: 2.258740e-04	ci right 2.557745e-04	k: 1010	n:4200000
CDH15   4200000 perm   7244 sec   (580 perm/sec)   p_kst 2.404762e-04   p_cons 8.070412e-01   p_joint 9.611905e-04

Joint ci ratio: 6.159005e-02	ci left: 9.316716e-04	ci right 9.911085e-04	k: 4046	n:4210000
Cons ci ratio: 9.341503e-04	ci left: 8.066731e-01	ci right 8.074272e-01	k: 3397682	n:4210000
KS ci ratio: 1.229665e-01	ci left: 2.264885e-04	ci right 2.563912e-04	k: 1015	n:4210000
CDH15   4210000 perm   7276 sec   (579 perm/sec)   p_kst 2.410926e-04   p_cons 8.070504e-01   p_joint 9.610451e-04

Joint ci ratio: 6.154447e-02	ci left: 9.308637e-04	ci right 9.902036e-04	k: 4052	n:4220000
Cons ci ratio: 9.330375e-04	ci left: 8.066753e-01	ci right 8.074285e-01	k: 3405760	n:4220000
KS ci ratio: 1.227853e-01	ci left: 2.266409e-04	ci right 2.565163e-04	k: 1018	n:4220000
CDH15   4220000 perm   7307 sec   (578 perm/sec)   p_kst 2.412322e-04   p_cons 8.070521e-01   p_joint 9.601896e-04

Joint ci ratio: 6.146112e-02	ci left: 9.312236e-04	ci right 9.905031e-04	k: 4063	n:4230000
Cons ci ratio: 9.319690e-04	ci left: 8.066640e-01	ci right 8.074164e-01	k: 3413781	n:4230000
KS ci ratio: 1.226650e-01	ci left: 2.265634e-04	ci right 2.563972e-04	k: 1020	n:4230000
CDH15   4230000 perm   7338 sec   (576 perm/sec)   p_kst 2.411348e-04   p_cons 8.070404e-01   p_joint 9.605201e-04

Joint ci ratio: 6.138564e-02	ci left: 9.313496e-04	ci right 9.905618e-04	k: 4073	n:4240000
Cons ci ratio: 9.308703e-04	ci left: 8.066641e-01	ci right 8.074156e-01	k: 3421850	n:4240000
KS ci ratio: 1.226050e-01	ci left: 2.262576e-04	ci right 2.560356e-04	k: 1021	n:4240000
CDH15   4240000 perm   7370 sec   (575 perm/sec)   p_kst 2.408019e-04   p_cons 8.070401e-01   p_joint 9.606132e-04

Joint ci ratio: 6.127290e-02	ci left: 9.326335e-04	ci right 9.918145e-04	k: 4088	n:4250000
Cons ci ratio: 9.297671e-04	ci left: 8.066671e-01	ci right 8.074177e-01	k: 3429931	n:4250000
KS ci ratio: 1.225451e-01	ci left: 2.259534e-04	ci right 2.556757e-04	k: 1022	n:4250000
CDH15   4250000 perm   7401 sec   (574 perm/sec)   p_kst 2.404706e-04   p_cons 8.070426e-01   p_joint 9.618824e-04

Joint ci ratio: 6.122802e-02	ci left: 9.318311e-04	ci right 9.909164e-04	k: 4094	n:4260000
Cons ci ratio: 9.286180e-04	ci left: 8.066867e-01	ci right 8.074364e-01	k: 3438083	n:4260000
KS ci ratio: 1.224853e-01	ci left: 2.256505e-04	ci right 2.553174e-04	k: 1023	n:4260000
CDH15   4260000 perm   7433 sec   (573 perm/sec)   p_kst 2.401408e-04   p_cons 8.070617e-01   p_joint 9.610329e-04

Joint ci ratio: 6.111615e-02	ci left: 9.331079e-04	ci right 9.921623e-04	k: 4109	n:4270000
Cons ci ratio: 9.275570e-04	ci left: 8.066781e-01	ci right 8.074269e-01	k: 3446115	n:4270000
KS ci ratio: 1.220687e-01	ci left: 2.267112e-04	ci right 2.564090e-04	k: 1030	n:4270000
CDH15   4270000 perm   7465 sec   (572 perm/sec)   p_kst 2.412178e-04   p_cons 8.070527e-01   p_joint 9.622951e-04

Joint ci ratio: 6.104935e-02	ci left: 9.329985e-04	ci right 9.919791e-04	k: 4118	n:4280000
Cons ci ratio: 9.264703e-04	ci left: 8.066793e-01	ci right 8.074273e-01	k: 3454189	n:4280000
KS ci ratio: 1.219505e-01	ci left: 2.266346e-04	ci right 2.562914e-04	k: 1032	n:4280000
CDH15   4280000 perm   7497 sec   (571 perm/sec)   p_kst 2.411215e-04   p_cons 8.070535e-01   p_joint 9.621495e-04

Joint ci ratio: 6.099016e-02	ci left: 9.326600e-04	ci right 9.915600e-04	k: 4126	n:4290000
Cons ci ratio: 9.254048e-04	ci left: 8.066747e-01	ci right 8.074218e-01	k: 3462238	n:4290000
KS ci ratio: 1.218915e-01	ci left: 2.263323e-04	ci right 2.559342e-04	k: 1033	n:4290000
CDH15   4290000 perm   7529 sec   (570 perm/sec)   p_kst 2.407925e-04   p_cons 8.070485e-01   p_joint 9.617716e-04

Joint ci ratio: 6.090903e-02	ci left: 9.330102e-04	ci right 9.918512e-04	k: 4137	n:4300000
Cons ci ratio: 9.243402e-04	ci left: 8.066711e-01	ci right 8.074173e-01	k: 3470291	n:4300000
KS ci ratio: 1.217150e-01	ci left: 2.264823e-04	ci right 2.560579e-04	k: 1036	n:4300000
CDH15   4300000 perm   7561 sec   (569 perm/sec)   p_kst 2.409302e-04   p_cons 8.070444e-01   p_joint 9.620930e-04

Joint ci ratio: 6.086495e-02	ci left: 9.322163e-04	ci right 9.909632e-04	k: 4143	n:4310000
Cons ci ratio: 9.232930e-04	ci left: 8.066629e-01	ci right 8.074082e-01	k: 3478324	n:4310000
KS ci ratio: 1.216564e-01	ci left: 2.261818e-04	ci right 2.557029e-04	k: 1037	n:4310000
CDH15   4310000 perm   7593 sec   (568 perm/sec)   p_kst 2.406032e-04   p_cons 8.070357e-01   p_joint 9.612529e-04

Joint ci ratio: 6.078432e-02	ci left: 9.325660e-04	ci right 9.912543e-04	k: 4154	n:4320000
Cons ci ratio: 9.222343e-04	ci left: 8.066597e-01	ci right 8.074042e-01	k: 3486379	n:4320000
KS ci ratio: 1.214810e-01	ci left: 2.263316e-04	ci right 2.558266e-04	k: 1040	n:4320000
CDH15   4320000 perm   7626 sec   (566 perm/sec)   p_kst 2.407407e-04   p_cons 8.070322e-01   p_joint 9.615741e-04

Joint ci ratio: 6.069672e-02	ci left: 9.331416e-04	ci right 9.917785e-04	k: 4166	n:4330000
Cons ci ratio: 9.211744e-04	ci left: 8.066582e-01	ci right 8.074019e-01	k: 3494441	n:4330000
KS ci ratio: 1.212482e-01	ci left: 2.267046e-04	ci right 2.561876e-04	k: 1044	n:4330000
CDH15   4330000 perm   7658 sec   (565 perm/sec)   p_kst 2.411085e-04   p_cons 8.070303e-01   p_joint 9.621247e-04

Joint ci ratio: 6.065309e-02	ci left: 9.323530e-04	ci right 9.908968e-04	k: 4172	n:4340000
Cons ci ratio: 9.201284e-04	ci left: 8.066533e-01	ci right 8.073961e-01	k: 3502488	n:4340000
KS ci ratio: 1.211324e-01	ci left: 2.266291e-04	ci right 2.560721e-04	k: 1046	n:4340000
CDH15   4340000 perm   7690 sec   (564 perm/sec)   p_kst 2.410138e-04   p_cons 8.070249e-01   p_joint 9.612903e-04

Joint ci ratio: 6.118378e-02	ci left: 9.139097e-04	ci right 9.718153e-04	k: 4100	n:4350000
Cons ci ratio: 9.190710e-04	ci left: 8.066534e-01	ci right 8.073954e-01	k: 3510557	n:4350000
KS ci ratio: 1.209016e-01	ci left: 2.269998e-04	ci right 2.564307e-04	k: 1050	n:4350000
CDH15   4350000 perm   7723 sec   (563 perm/sec)   p_kst 2.413793e-04   p_cons 8.070246e-01   p_joint 9.425287e-04

Joint ci ratio: 5.885920e-02	ci left: 9.863673e-04	ci right 1.046409e-03	k: 4430	n:4360000
Cons ci ratio: 9.180065e-04	ci left: 8.066572e-01	ci right 8.073983e-01	k: 3518642	n:4360000
KS ci ratio: 1.206150e-01	ci left: 2.275913e-04	ci right 2.570240e-04	k: 1055	n:4360000
CDH15   4360000 perm   7755 sec   (562 perm/sec)   p_kst 2.419725e-04   p_cons 8.070280e-01   p_joint 1.016055e-03

Joint ci ratio: 5.877303e-02	ci left: 9.870412e-04	ci right 1.047033e-03	k: 4443	n:4370000
Cons ci ratio: 9.169436e-04	ci left: 8.066617e-01	ci right 8.074019e-01	k: 3526730	n:4370000
KS ci ratio: 1.206151e-01	ci left: 2.270705e-04	ci right 2.564359e-04	k: 1055	n:4370000
CDH15   4370000 perm   7787 sec   (561 perm/sec)   p_kst 2.414188e-04   p_cons 8.070320e-01   p_joint 1.016705e-03

Joint ci ratio: 5.871361e-02	ci left: 9.868123e-04	ci right 1.046727e-03	k: 4452	n:4380000
Cons ci ratio: 9.159508e-04	ci left: 8.066436e-01	ci right 8.073830e-01	k: 3534719	n:4380000
KS ci ratio: 1.205010e-01	ci left: 2.269950e-04	ci right 2.563208e-04	k: 1057	n:4380000
CDH15   4380000 perm   7819 sec   (560 perm/sec)   p_kst 2.413242e-04   p_cons 8.070135e-01   p_joint 1.016438e-03

Joint ci ratio: 5.918791e-02	ci left: 9.686295e-04	ci right 1.027932e-03	k: 4381	n:4390000
Cons ci ratio: 9.149285e-04	ci left: 8.066367e-01	ci right 8.073752e-01	k: 3542757	n:4390000
KS ci ratio: 1.203305e-01	ci left: 2.271407e-04	ci right 2.564408e-04	k: 1060	n:4390000
CDH15   4390000 perm   7851 sec   (559 perm/sec)   p_kst 2.414579e-04   p_cons 8.070062e-01   p_joint 9.979499e-04

Joint ci ratio: 5.913396e-02	ci left: 9.682193e-04	ci right 1.027441e-03	k: 4389	n:4400000
Cons ci ratio: 9.138969e-04	ci left: 8.066341e-01	ci right 8.073718e-01	k: 3550814	n:4400000
KS ci ratio: 1.201608e-01	ci left: 2.272858e-04	ci right 2.565603e-04	k: 1063	n:4400000
CDH15   4400000 perm   7884 sec   (558 perm/sec)   p_kst 2.415909e-04   p_cons 8.070032e-01   p_joint 9.975000e-04

Joint ci ratio: 5.906673e-02	ci left: 9.682579e-04	ci right 1.027412e-03	k: 4399	n:4410000
Cons ci ratio: 9.128881e-04	ci left: 8.066250e-01	ci right 8.073619e-01	k: 3558842	n:4410000
KS ci ratio: 1.201044e-01	ci left: 2.269903e-04	ci right 2.562121e-04	k: 1064	n:4410000
CDH15   4410000 perm   7916 sec   (557 perm/sec)   p_kst 2.412698e-04   p_cons 8.069937e-01   p_joint 9.975057e-04

Joint ci ratio: 5.897964e-02	ci left: 9.689650e-04	ci right 1.028072e-03	k: 4412	n:4420000
Cons ci ratio: 9.118277e-04	ci left: 8.066347e-01	ci right 8.073708e-01	k: 3566953	n:4420000
KS ci ratio: 1.199917e-01	ci left: 2.269157e-04	ci right 2.560985e-04	k: 1066	n:4420000
CDH15   4420000 perm   7949 sec   (556 perm/sec)   p_kst 2.411765e-04   p_cons 8.070029e-01   p_joint 9.981900e-04

Joint ci ratio: 5.893962e-02	ci left: 9.681122e-04	ci right 1.027126e-03	k: 4418	n:4430000
Cons ci ratio: 9.107735e-04	ci left: 8.066435e-01	ci right 8.073787e-01	k: 3575060	n:4430000
KS ci ratio: 1.199356e-01	ci left: 2.266224e-04	ci right 2.557529e-04	k: 1067	n:4430000
CDH15   4430000 perm   7982 sec   (555 perm/sec)   p_kst 2.408578e-04   p_cons 8.070113e-01   p_joint 9.972912e-04

Joint ci ratio: 5.888635e-02	ci left: 9.677070e-04	ci right 1.026641e-03	k: 4426	n:4440000
Cons ci ratio: 9.097217e-04	ci left: 8.066527e-01	ci right 8.073870e-01	k: 3583169	n:4440000
KS ci ratio: 1.197116e-01	ci left: 2.269859e-04	ci right 2.561048e-04	k: 1071	n:4440000
CDH15   4440000 perm   8015 sec   (554 perm/sec)   p_kst 2.412162e-04   p_cons 8.070200e-01   p_joint 9.968468e-04

Joint ci ratio: 5.881332e-02	ci left: 9.679679e-04	ci right 1.026842e-03	k: 4437	n:4450000
Cons ci ratio: 9.087516e-04	ci left: 8.066350e-01	ci right 8.073686e-01	k: 3591159	n:4450000
KS ci ratio: 1.195444e-01	ci left: 2.271298e-04	ci right 2.562236e-04	k: 1074	n:4450000
CDH15   4450000 perm   8048 sec   (553 perm/sec)   p_kst 2.413483e-04   p_cons 8.070020e-01   p_joint 9.970787e-04

Joint ci ratio: 5.875378e-02	ci left: 9.677859e-04	ci right 1.026587e-03	k: 4446	n:4460000
Cons ci ratio: 9.077368e-04	ci left: 8.066339e-01	ci right 8.073666e-01	k: 3599222	n:4460000
KS ci ratio: 1.194334e-01	ci left: 2.270556e-04	ci right 2.561109e-04	k: 1076	n:4460000
CDH15   4460000 perm   8080 sec   (552 perm/sec)   p_kst 2.412556e-04   p_cons 8.070004e-01   p_joint 9.968610e-04

Joint ci ratio: 5.870761e-02	ci left: 9.671638e-04	ci right 1.025879e-03	k: 4453	n:4470000
Cons ci ratio: 9.067163e-04	ci left: 8.066358e-01	ci right 8.073678e-01	k: 3607299	n:4470000
KS ci ratio: 1.194334e-01	ci left: 2.265476e-04	ci right 2.555380e-04	k: 1076	n:4470000
CDH15   4470000 perm   8113 sec   (551 perm/sec)   p_kst 2.407159e-04   p_cons 8.070020e-01   p_joint 9.961969e-04

Joint ci ratio: 5.863525e-02	ci left: 9.674243e-04	ci right 1.026081e-03	k: 4464	n:4480000
Cons ci ratio: 9.056571e-04	ci left: 8.066523e-01	ci right 8.073834e-01	k: 3615441	n:4480000
KS ci ratio: 1.193227e-01	ci left: 2.264750e-04	ci right 2.554274e-04	k: 1078	n:4480000
CDH15   4480000 perm   8147 sec   (550 perm/sec)   p_kst 2.406250e-04   p_cons 8.070181e-01   p_joint 9.964286e-04

Joint ci ratio: 5.856970e-02	ci left: 9.674642e-04	ci right 1.026055e-03	k: 4474	n:4490000
Cons ci ratio: 9.046293e-04	ci left: 8.066592e-01	ci right 8.073894e-01	k: 3623540	n:4490000
KS ci ratio: 1.192674e-01	ci left: 2.261867e-04	ci right 2.550878e-04	k: 1079	n:4490000
CDH15   4490000 perm   8180 sec   (549 perm/sec)   p_kst 2.403118e-04   p_cons 8.070245e-01   p_joint 9.964365e-04

Joint ci ratio: 5.853050e-02	ci left: 9.666281e-04	ci right 1.025128e-03	k: 4480	n:4500000
Cons ci ratio: 9.036238e-04	ci left: 8.066595e-01	ci right 8.073890e-01	k: 3631610	n:4500000
KS ci ratio: 1.191572e-01	ci left: 2.261152e-04	ci right 2.549787e-04	k: 1081	n:4500000
CDH15   4500000 perm   8214 sec   (548 perm/sec)   p_kst 2.402222e-04   p_cons 8.070244e-01   p_joint 9.955556e-04

Joint ci ratio: 5.845227e-02	ci left: 9.671066e-04	ci right 1.025555e-03	k: 4492	n:4510000
Cons ci ratio: 9.025914e-04	ci left: 8.066703e-01	ci right 8.073989e-01	k: 3639727	n:4510000
KS ci ratio: 1.191022e-01	ci left: 2.258290e-04	ci right 2.546416e-04	k: 1082	n:4510000
CDH15   4510000 perm   8246 sec   (547 perm/sec)   p_kst 2.399113e-04   p_cons 8.070348e-01   p_joint 9.960089e-04

Joint ci ratio: 5.859611e-02	ci left: 9.601709e-04	ci right 1.018348e-03	k: 4470	n:4520000
Cons ci ratio: 9.015561e-04	ci left: 8.066832e-01	ci right 8.074111e-01	k: 3647854	n:4520000
KS ci ratio: 1.187736e-01	ci left: 2.266173e-04	ci right 2.554452e-04	k: 1088	n:4520000
CDH15   4520000 perm   8279 sec   (546 perm/sec)   p_kst 2.407080e-04   p_cons 8.070473e-01   p_joint 9.889381e-04

Joint ci ratio: 5.871460e-02	ci left: 9.541360e-04	ci right 1.012068e-03	k: 4452	n:4530000
Cons ci ratio: 9.005116e-04	ci left: 8.067006e-01	ci right 8.074275e-01	k: 3656001	n:4530000
KS ci ratio: 1.186103e-01	ci left: 2.267597e-04	ci right 2.555632e-04	k: 1091	n:4530000
CDH15   4530000 perm   8313 sec   (545 perm/sec)   p_kst 2.408389e-04   p_cons 8.070642e-01   p_joint 9.827815e-04

Joint ci ratio: 5.866852e-02	ci left: 9.535536e-04	ci right 1.011403e-03	k: 4459	n:4540000
Cons ci ratio: 8.995337e-04	ci left: 8.066960e-01	ci right 8.074221e-01	k: 3664049	n:4540000
KS ci ratio: 1.185560e-01	ci left: 2.264739e-04	ci right 2.552271e-04	k: 1092	n:4540000
CDH15   4540000 perm   8345 sec   (544 perm/sec)   p_kst 2.405286e-04   p_cons 8.070593e-01   p_joint 9.821586e-04

Joint ci ratio: 5.863570e-02	ci left: 9.525406e-04	ci right 1.010295e-03	k: 4464	n:4550000
Cons ci ratio: 8.985121e-04	ci left: 8.067077e-01	ci right 8.074330e-01	k: 3672171	n:4550000
KS ci ratio: 1.185019e-01	ci left: 2.261894e-04	ci right 2.548924e-04	k: 1093	n:4550000
CDH15   4550000 perm   8379 sec   (543 perm/sec)   p_kst 2.402198e-04   p_cons 8.070705e-01   p_joint 9.810989e-04

Joint ci ratio: 5.858981e-02	ci left: 9.519643e-04	ci right 1.009637e-03	k: 4471	n:4560000
Cons ci ratio: 8.975091e-04	ci left: 8.067141e-01	ci right 8.074386e-01	k: 3680269	n:4560000
KS ci ratio: 1.183937e-01	ci left: 2.261190e-04	ci right 2.547850e-04	k: 1095	n:4560000
CDH15   4560000 perm   8413 sec   (542 perm/sec)   p_kst 2.401316e-04   p_cons 8.070765e-01   p_joint 9.804825e-04

Joint ci ratio: 5.857676e-02	ci left: 9.503124e-04	ci right 1.007872e-03	k: 4473	n:4570000
Cons ci ratio: 8.965157e-04	ci left: 8.067182e-01	ci right 8.074420e-01	k: 3688357	n:4570000
KS ci ratio: 1.183937e-01	ci left: 2.256242e-04	ci right 2.542275e-04	k: 1095	n:4570000
CDH15   4570000 perm   8447 sec   (541 perm/sec)   p_kst 2.396061e-04   p_cons 8.070803e-01   p_joint 9.787746e-04

Joint ci ratio: 5.851140e-02	ci left: 9.503889e-04	ci right 1.007887e-03	k: 4483	n:4580000
Cons ci ratio: 8.955313e-04	ci left: 8.067204e-01	ci right 8.074434e-01	k: 3696436	n:4580000
KS ci ratio: 1.183398e-01	ci left: 2.253435e-04	ci right 2.538972e-04	k: 1096	n:4580000
CDH15   4580000 perm   8481 sec   (540 perm/sec)   p_kst 2.393013e-04   p_cons 8.070821e-01   p_joint 9.788210e-04

Joint ci ratio: 5.845278e-02	ci left: 9.502505e-04	ci right 1.007680e-03	k: 4492	n:4590000
Cons ci ratio: 8.945552e-04	ci left: 8.067208e-01	ci right 8.074430e-01	k: 3704507	n:4590000
KS ci ratio: 1.181783e-01	ci left: 2.254868e-04	ci right 2.540170e-04	k: 1099	n:4590000
CDH15   4590000 perm   8514 sec   (539 perm/sec)   p_kst 2.394336e-04   p_cons 8.070821e-01   p_joint 9.786492e-04

Joint ci ratio: 5.838784e-02	ci left: 9.503269e-04	ci right 1.007696e-03	k: 4502	n:4600000
Cons ci ratio: 8.935878e-04	ci left: 8.067193e-01	ci right 8.074407e-01	k: 3712569	n:4600000
KS ci ratio: 1.180710e-01	ci left: 2.254185e-04	ci right 2.539124e-04	k: 1101	n:4600000
CDH15   4600000 perm   8548 sec   (538 perm/sec)   p_kst 2.393478e-04   p_cons 8.070802e-01   p_joint 9.786957e-04

Joint ci ratio: 5.842037e-02	ci left: 9.471966e-04	ci right 1.004409e-03	k: 4497	n:4610000
Cons ci ratio: 8.926385e-04	ci left: 8.067126e-01	ci right 8.074332e-01	k: 3720607	n:4610000
KS ci ratio: 1.179640e-01	ci left: 2.253506e-04	ci right 2.538083e-04	k: 1103	n:4610000
CDH15   4610000 perm   8582 sec   (537 perm/sec)   p_kst 2.392625e-04   p_cons 8.070731e-01   p_joint 9.754881e-04

Joint ci ratio: 5.837498e-02	ci left: 9.466394e-04	ci right 1.003773e-03	k: 4504	n:4620000
Cons ci ratio: 8.916488e-04	ci left: 8.067211e-01	ci right 8.074409e-01	k: 3728715	n:4620000
KS ci ratio: 1.179640e-01	ci left: 2.248628e-04	ci right 2.532589e-04	k: 1103	n:4620000
CDH15   4620000 perm   8616 sec   (536 perm/sec)   p_kst 2.387446e-04   p_cons 8.070812e-01   p_joint 9.748918e-04

Joint ci ratio: 5.671087e-02	ci left: 1.001646e-03	ci right 1.060320e-03	k: 4772	n:4630000
Cons ci ratio: 8.906908e-04	ci left: 8.067195e-01	ci right 8.074386e-01	k: 3736777	n:4630000
KS ci ratio: 1.178573e-01	ci left: 2.247964e-04	ci right 2.531566e-04	k: 1105	n:4630000
CDH15   4630000 perm   8651 sec   (535 perm/sec)   p_kst 2.386609e-04   p_cons 8.070793e-01   p_joint 1.030670e-03

Joint ci ratio: 5.665156e-02	ci left: 1.001612e-03	ci right 1.060220e-03	k: 4782	n:4640000
Cons ci ratio: 8.897402e-04	ci left: 8.067165e-01	ci right 8.074348e-01	k: 3744832	n:4640000
KS ci ratio: 1.177509e-01	ci left: 2.247302e-04	ci right 2.530547e-04	k: 1107	n:4640000
CDH15   4640000 perm   8686 sec   (534 perm/sec)   p_kst 2.385776e-04   p_cons 8.070759e-01   p_joint 1.030603e-03

Joint ci ratio: 5.669317e-02	ci left: 9.979742e-04	ci right 1.056413e-03	k: 4775	n:4650000
Cons ci ratio: 8.887816e-04	ci left: 8.067174e-01	ci right 8.074349e-01	k: 3752905	n:4650000
KS ci ratio: 1.176448e-01	ci left: 2.246644e-04	ci right 2.529533e-04	k: 1109	n:4650000
CDH15   4650000 perm   8720 sec   (533 perm/sec)   p_kst 2.384946e-04   p_cons 8.070763e-01   p_joint 1.026882e-03

Joint ci ratio: 5.665169e-02	ci left: 9.973135e-04	ci right 1.055670e-03	k: 4782	n:4660000
Cons ci ratio: 8.878102e-04	ci left: 8.067238e-01	ci right 8.074406e-01	k: 3761004	n:4660000
KS ci ratio: 1.174861e-01	ci left: 2.248071e-04	ci right 2.530732e-04	k: 1112	n:4660000
CDH15   4660000 perm   8754 sec   (532 perm/sec)   p_kst 2.386266e-04   p_cons 8.070824e-01   p_joint 1.026180e-03

Joint ci ratio: 5.659847e-02	ci left: 9.970778e-04	ci right 1.055364e-03	k: 4791	n:4670000
Cons ci ratio: 8.868609e-04	ci left: 8.067236e-01	ci right 8.074396e-01	k: 3769072	n:4670000
KS ci ratio: 1.173281e-01	ci left: 2.249493e-04	ci right 2.531925e-04	k: 1115	n:4670000
CDH15   4670000 perm   8788 sec   (531 perm/sec)   p_kst 2.387580e-04   p_cons 8.070818e-01   p_joint 1.025910e-03

Joint ci ratio: 5.652772e-02	ci left: 9.974751e-04	ci right 1.055709e-03	k: 4803	n:4680000
Cons ci ratio: 8.858678e-04	ci left: 8.067399e-01	ci right 8.074551e-01	k: 3777217	n:4680000
KS ci ratio: 1.172231e-01	ci left: 2.248834e-04	ci right 2.530914e-04	k: 1117	n:4680000
CDH15   4680000 perm   8823 sec   (530 perm/sec)   p_kst 2.386752e-04   p_cons 8.070976e-01   p_joint 1.026282e-03

Joint ci ratio: 5.648073e-02	ci left: 9.970300e-04	ci right 1.055188e-03	k: 4811	n:4690000
Cons ci ratio: 8.849313e-04	ci left: 8.067373e-01	ci right 8.074517e-01	k: 3785274	n:4690000
KS ci ratio: 1.172231e-01	ci left: 2.244039e-04	ci right 2.525518e-04	k: 1117	n:4690000
CDH15   4690000 perm   8857 sec   (530 perm/sec)   p_kst 2.381663e-04   p_cons 8.070947e-01   p_joint 1.025800e-03

Joint ci ratio: 5.641628e-02	ci left: 9.972160e-04	ci right 1.055316e-03	k: 4822	n:4700000
Cons ci ratio: 8.839797e-04	ci left: 8.067411e-01	ci right 8.074547e-01	k: 3793361	n:4700000
KS ci ratio: 1.170662e-01	ci left: 2.245460e-04	ci right 2.526714e-04	k: 1120	n:4700000
CDH15   4700000 perm   8891 sec   (529 perm/sec)   p_kst 2.382979e-04   p_cons 8.070981e-01   p_joint 1.025957e-03

Joint ci ratio: 5.635205e-02	ci left: 9.974013e-04	ci right 1.055444e-03	k: 4833	n:4710000
Cons ci ratio: 8.830197e-04	ci left: 8.067489e-01	ci right 8.074618e-01	k: 3801467	n:4710000
KS ci ratio: 1.168578e-01	ci left: 2.248937e-04	ci right 2.530090e-04	k: 1124	n:4710000
CDH15   4710000 perm   8926 sec   (528 perm/sec)   p_kst 2.386412e-04   p_cons 8.071055e-01   p_joint 1.026115e-03

Joint ci ratio: 5.628804e-02	ci left: 9.975859e-04	ci right 1.055571e-03	k: 4844	n:4720000
Cons ci ratio: 8.820820e-04	ci left: 8.067499e-01	ci right 8.074620e-01	k: 3809541	n:4720000
KS ci ratio: 1.168060e-01	ci left: 2.246229e-04	ci right 2.526911e-04	k: 1125	n:4720000
CDH15   4720000 perm   8960 sec   (527 perm/sec)   p_kst 2.383475e-04   p_cons 8.071061e-01   p_joint 1.026271e-03

Joint ci ratio: 5.629973e-02	ci left: 9.950599e-04	ci right 1.052911e-03	k: 4842	n:4730000
Cons ci ratio: 8.811575e-04	ci left: 8.067473e-01	ci right 8.074587e-01	k: 3817598	n:4730000
KS ci ratio: 1.166507e-01	ci left: 2.247638e-04	ci right 2.528096e-04	k: 1128	n:4730000
CDH15   4730000 perm   8994 sec   (526 perm/sec)   p_kst 2.384778e-04   p_cons 8.071032e-01   p_joint 1.023679e-03

Joint ci ratio: 5.623590e-02	ci left: 9.952487e-04	ci right 1.053043e-03	k: 4853	n:4740000
Cons ci ratio: 8.802371e-04	ci left: 8.067443e-01	ci right 8.074549e-01	k: 3825653	n:4740000
KS ci ratio: 1.163932e-01	ci left: 2.253137e-04	ci right 2.533618e-04	k: 1133	n:4740000
CDH15   4740000 perm   9029 sec   (525 perm/sec)   p_kst 2.390295e-04   p_cons 8.070998e-01   p_joint 1.023840e-03

Joint ci ratio: 5.669378e-02	ci left: 9.769639e-04	ci right 1.034173e-03	k: 4775	n:4750000
Cons ci ratio: 8.793065e-04	ci left: 8.067459e-01	ci right 8.074558e-01	k: 3833730	n:4750000
KS ci ratio: 1.162907e-01	ci left: 2.252481e-04	ci right 2.532617e-04	k: 1135	n:4750000
CDH15   4750000 perm   9064 sec   (524 perm/sec)   p_kst 2.389474e-04   p_cons 8.071011e-01   p_joint 1.005263e-03

Joint ci ratio: 5.664637e-02	ci left: 9.765683e-04	ci right 1.033705e-03	k: 4783	n:4760000
Cons ci ratio: 8.784079e-04	ci left: 8.067373e-01	ci right 8.074464e-01	k: 3841758	n:4760000
KS ci ratio: 1.160865e-01	ci left: 2.255909e-04	ci right 2.535944e-04	k: 1139	n:4760000
CDH15   4760000 perm   9099 sec   (523 perm/sec)   p_kst 2.392857e-04   p_cons 8.070920e-01   p_joint 1.004832e-03

Joint ci ratio: 5.554729e-02	ci left: 1.014002e-03	ci right 1.072141e-03	k: 4974	n:4770000
Cons ci ratio: 8.774606e-04	ci left: 8.067469e-01	ci right 8.074553e-01	k: 3849873	n:4770000
KS ci ratio: 1.159340e-01	ci left: 2.257286e-04	ci right 2.537099e-04	k: 1142	n:4770000
CDH15   4770000 perm   9135 sec   (522 perm/sec)   p_kst 2.394130e-04   p_cons 8.071013e-01   p_joint 1.042767e-03

Joint ci ratio: 5.545259e-02	ci left: 1.015388e-03	ci right 1.073504e-03	k: 4991	n:4780000
Cons ci ratio: 8.765269e-04	ci left: 8.067527e-01	ci right 8.074603e-01	k: 3857970	n:4780000
KS ci ratio: 1.157822e-01	ci left: 2.258658e-04	ci right 2.538250e-04	k: 1145	n:4780000
CDH15   4780000 perm   9170 sec   (521 perm/sec)   p_kst 2.395397e-04   p_cons 8.071067e-01   p_joint 1.044142e-03

Joint ci ratio: 5.541932e-02	ci left: 1.014503e-03	ci right 1.072533e-03	k: 4997	n:4790000
Cons ci ratio: 8.755834e-04	ci left: 8.067631e-01	ci right 8.074700e-01	k: 3866089	n:4790000
KS ci ratio: 1.157822e-01	ci left: 2.253943e-04	ci right 2.532950e-04	k: 1145	n:4790000
CDH15   4790000 perm   9206 sec   (520 perm/sec)   p_kst 2.390397e-04   p_cons 8.071167e-01   p_joint 1.043215e-03

Joint ci ratio: 5.535843e-02	ci left: 1.014650e-03	ci right 1.072622e-03	k: 5008	n:4800000
Cons ci ratio: 8.746738e-04	ci left: 8.067624e-01	ci right 8.074685e-01	k: 3874155	n:4800000
KS ci ratio: 1.157317e-01	ci left: 2.251270e-04	ci right 2.529817e-04	k: 1146	n:4800000
CDH15   4800000 perm   9241 sec   (519 perm/sec)   p_kst 2.387500e-04   p_cons 8.071156e-01   p_joint 1.043333e-03

Joint ci ratio: 5.529774e-02	ci left: 1.014795e-03	ci right 1.072710e-03	k: 5019	n:4810000
Cons ci ratio: 8.737835e-04	ci left: 8.067558e-01	ci right 8.074613e-01	k: 3882193	n:4810000
KS ci ratio: 1.155304e-01	ci left: 2.254665e-04	ci right 2.533114e-04	k: 1150	n:4810000
CDH15   4810000 perm   9277 sec   (518 perm/sec)   p_kst 2.390852e-04   p_cons 8.071087e-01   p_joint 1.043451e-03

Joint ci ratio: 5.523726e-02	ci left: 1.014941e-03	ci right 1.072798e-03	k: 5030	n:4820000
Cons ci ratio: 8.729127e-04	ci left: 8.067433e-01	ci right 8.074480e-01	k: 3890202	n:4820000
KS ci ratio: 1.152803e-01	ci left: 2.260061e-04	ci right 2.538531e-04	k: 1155	n:4820000
CDH15   4820000 perm   9313 sec   (518 perm/sec)   p_kst 2.396266e-04   p_cons 8.070959e-01   p_joint 1.043568e-03

Joint ci ratio: 5.516601e-02	ci left: 1.015494e-03	ci right 1.073306e-03	k: 5043	n:4830000
Cons ci ratio: 8.720248e-04	ci left: 8.067379e-01	ci right 8.074419e-01	k: 3898245	n:4830000
KS ci ratio: 1.150317e-01	ci left: 2.265436e-04	ci right 2.543926e-04	k: 1160	n:4830000
CDH15   4830000 perm   9349 sec   (517 perm/sec)   p_kst 2.401656e-04   p_cons 8.070901e-01   p_joint 1.044099e-03

Joint ci ratio: 5.510050e-02	ci left: 1.015841e-03	ci right 1.073602e-03	k: 5055	n:4840000
Cons ci ratio: 8.710899e-04	ci left: 8.067503e-01	ci right 8.074535e-01	k: 3906374	n:4840000
KS ci ratio: 1.148834e-01	ci left: 2.266775e-04	ci right 2.545046e-04	k: 1163	n:4840000
CDH15   4840000 perm   9385 sec   (516 perm/sec)   p_kst 2.402893e-04   p_cons 8.071021e-01   p_joint 1.044421e-03

Joint ci ratio: 5.505153e-02	ci left: 1.015576e-03	ci right 1.073270e-03	k: 5064	n:4850000
Cons ci ratio: 8.701736e-04	ci left: 8.067570e-01	ci right 8.074595e-01	k: 3914476	n:4850000
KS ci ratio: 1.147848e-01	ci left: 2.266107e-04	ci right 2.544041e-04	k: 1165	n:4850000
CDH15   4850000 perm   9421 sec   (515 perm/sec)   p_kst 2.402062e-04   p_cons 8.071085e-01   p_joint 1.044124e-03

Joint ci ratio: 5.502984e-02	ci left: 1.014298e-03	ci right 1.071896e-03	k: 5068	n:4860000
Cons ci ratio: 8.692549e-04	ci left: 8.067656e-01	ci right 8.074674e-01	k: 3922587	n:4860000
KS ci ratio: 1.147357e-01	ci left: 2.263443e-04	ci right 2.540923e-04	k: 1166	n:4860000
CDH15   4860000 perm   9456 sec   (514 perm/sec)   p_kst 2.399177e-04   p_cons 8.071167e-01   p_joint 1.042798e-03

Joint ci ratio: 5.497564e-02	ci left: 1.014241e-03	ci right 1.071776e-03	k: 5078	n:4870000
Cons ci ratio: 8.683856e-04	ci left: 8.067575e-01	ci right 8.074586e-01	k: 3930617	n:4870000
KS ci ratio: 1.145885e-01	ci left: 2.264778e-04	ci right 2.542042e-04	k: 1169	n:4870000
CDH15   4870000 perm   9493 sec   (513 perm/sec)   p_kst 2.400411e-04   p_cons 8.071082e-01   p_joint 1.042710e-03

Joint ci ratio: 5.491621e-02	ci left: 1.014385e-03	ci right 1.071865e-03	k: 5089	n:4880000
Cons ci ratio: 8.675040e-04	ci left: 8.067548e-01	ci right 8.074551e-01	k: 3938673	n:4880000
KS ci ratio: 1.145395e-01	ci left: 2.262128e-04	ci right 2.538941e-04	k: 1170	n:4880000
CDH15   4880000 perm   9529 sec   (512 perm/sec)   p_kst 2.397541e-04   p_cons 8.071051e-01   p_joint 1.042828e-03

Joint ci ratio: 5.487311e-02	ci left: 1.013925e-03	ci right 1.071331e-03	k: 5097	n:4890000
Cons ci ratio: 8.666302e-04	ci left: 8.067502e-01	ci right 8.074498e-01	k: 3946720	n:4890000
KS ci ratio: 1.143931e-01	ci left: 2.263461e-04	ci right 2.540059e-04	k: 1173	n:4890000
CDH15   4890000 perm   9565 sec   (511 perm/sec)   p_kst 2.398773e-04   p_cons 8.071002e-01   p_joint 1.042331e-03

Joint ci ratio: 5.483012e-02	ci left: 1.013466e-03	ci right 1.070800e-03	k: 5105	n:4900000
Cons ci ratio: 8.658187e-04	ci left: 8.067242e-01	ci right 8.074232e-01	k: 3954662	n:4900000
KS ci ratio: 1.142958e-01	ci left: 2.262807e-04	ci right 2.539074e-04	k: 1175	n:4900000
CDH15   4900000 perm   9600 sec   (510 perm/sec)   p_kst 2.397959e-04   p_cons 8.070739e-01   p_joint 1.041837e-03

Joint ci ratio: 5.476044e-02	ci left: 1.014013e-03	ci right 1.071303e-03	k: 5118	n:4910000
Cons ci ratio: 8.649613e-04	ci left: 8.067157e-01	ci right 8.074139e-01	k: 3962689	n:4910000
KS ci ratio: 1.141503e-01	ci left: 2.264134e-04	ci right 2.540187e-04	k: 1178	n:4910000
CDH15   4910000 perm   9636 sec   (510 perm/sec)   p_kst 2.399185e-04   p_cons 8.070650e-01   p_joint 1.042363e-03

Joint ci ratio: 5.470704e-02	ci left: 1.013957e-03	ci right 1.071186e-03	k: 5128	n:4920000
Cons ci ratio: 8.640635e-04	ci left: 8.067226e-01	ci right 8.074201e-01	k: 3970792	n:4920000
KS ci ratio: 1.139090e-01	ci left: 2.269405e-04	ci right 2.545476e-04	k: 1183	n:4920000
CDH15   4920000 perm   9672 sec   (509 perm/sec)   p_kst 2.404472e-04   p_cons 8.070715e-01   p_joint 1.042276e-03

Joint ci ratio: 5.464314e-02	ci left: 1.014301e-03	ci right 1.071481e-03	k: 5140	n:4930000
Cons ci ratio: 8.631810e-04	ci left: 8.067250e-01	ci right 8.074219e-01	k: 3978873	n:4930000
KS ci ratio: 1.137170e-01	ci left: 2.272684e-04	ci right 2.548657e-04	k: 1187	n:4930000
CDH15   4930000 perm   9709 sec   (508 perm/sec)   p_kst 2.407708e-04   p_cons 8.070736e-01   p_joint 1.042596e-03

Joint ci ratio: 5.455298e-02	ci left: 1.015642e-03	ci right 1.072800e-03	k: 5157	n:4940000
Cons ci ratio: 8.623140e-04	ci left: 8.067228e-01	ci right 8.074189e-01	k: 3986931	n:4940000
KS ci ratio: 1.134784e-01	ci left: 2.277917e-04	ci right 2.553907e-04	k: 1192	n:4940000
CDH15   4940000 perm   9745 sec   (507 perm/sec)   p_kst 2.412955e-04   p_cons 8.070711e-01   p_joint 1.043927e-03

Joint ci ratio: 5.377589e-02	ci left: 1.043483e-03	ci right 1.101346e-03	k: 5307	n:4950000
Cons ci ratio: 8.614430e-04	ci left: 8.067230e-01	ci right 8.074184e-01	k: 3995001	n:4950000
KS ci ratio: 1.132887e-01	ci left: 2.281167e-04	ci right 2.557057e-04	k: 1196	n:4950000
CDH15   4950000 perm   9782 sec   (506 perm/sec)   p_kst 2.416162e-04   p_cons 8.070709e-01   p_joint 1.072121e-03

Joint ci ratio: 5.373542e-02	ci left: 1.042971e-03	ci right 1.100760e-03	k: 5315	n:4960000
Cons ci ratio: 8.605801e-04	ci left: 8.067212e-01	ci right 8.074159e-01	k: 4003061	n:4960000
KS ci ratio: 1.131941e-01	ci left: 2.280486e-04	ci right 2.556049e-04	k: 1198	n:4960000
CDH15   4960000 perm   9818 sec   (505 perm/sec)   p_kst 2.415323e-04   p_cons 8.070688e-01   p_joint 1.071573e-03

Joint ci ratio: 5.367991e-02	ci left: 1.043056e-03	ci right 1.100788e-03	k: 5326	n:4970000
Cons ci ratio: 8.597354e-04	ci left: 8.067138e-01	ci right 8.074078e-01	k: 4011093	n:4970000
KS ci ratio: 1.130528e-01	ci left: 2.281763e-04	ci right 2.557112e-04	k: 1201	n:4970000
CDH15   4970000 perm   9855 sec   (504 perm/sec)   p_kst 2.416499e-04   p_cons 8.070610e-01   p_joint 1.071630e-03

Joint ci ratio: 5.362960e-02	ci left: 1.042942e-03	ci right 1.100612e-03	k: 5336	n:4980000
Cons ci ratio: 8.588715e-04	ci left: 8.067142e-01	ci right 8.074075e-01	k: 4019164	n:4980000
KS ci ratio: 1.129589e-01	ci left: 2.281084e-04	ci right 2.556107e-04	k: 1203	n:4980000
CDH15   4980000 perm   9891 sec   (503 perm/sec)   p_kst 2.415663e-04   p_cons 8.070610e-01   p_joint 1.071486e-03

Joint ci ratio: 5.355938e-02	ci left: 1.043620e-03	ci right 1.101250e-03	k: 5350	n:4990000
Cons ci ratio: 8.580053e-04	ci left: 8.067164e-01	ci right 8.074091e-01	k: 4027244	n:4990000
KS ci ratio: 1.127717e-01	ci left: 2.284302e-04	ci right 2.559227e-04	k: 1207	n:4990000
CDH15   4990000 perm   9928 sec   (503 perm/sec)   p_kst 2.418838e-04   p_cons 8.070629e-01   p_joint 1.072144e-03

Joint ci ratio: 5.348944e-02	ci left: 1.044295e-03	ci right 1.101885e-03	k: 5364	n:5000000
Cons ci ratio: 8.571456e-04	ci left: 8.067172e-01	ci right 8.074092e-01	k: 4035317	n:5000000
KS ci ratio: 1.125854e-01	ci left: 2.287508e-04	ci right 2.562334e-04	k: 1211	n:5000000
CDH15   5000000 perm   9965 sec   (502 perm/sec)   p_kst 2.422000e-04   p_cons 8.070634e-01   p_joint 1.072800e-03

Outputting figure to mutsig2_images.part000000000034/CDH15.5_2501_5000000_0.0002422_0.80706_0.0010728.png
                gene_name: CDH15
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00024 
        ci_ks_bounds_left: 0.00023 
       ci_ks_bounds_right: 0.00026 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0010 
    ci_joint_bounds_right: 0.0011 

Current progress: 37 percent done.
CDH24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
CDH24   10000 perm   2 sec   (6189 perm/sec)   p_kst 1.089000e-01   p_cons 2.030000e-02   p_joint 4.300000e-02

Joint ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
CDH24   20000 perm   4 sec   (5592 perm/sec)   p_kst 1.124000e-01   p_cons 1.990000e-02   p_joint 4.625000e-02

Joint ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
Cons ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
KS ci ratio: 6.307267e-02	ci left: 1.104574e-01	ci right 1.176842e-01	k: 3421	n:30000
CDH24   30000 perm   6 sec   (5365 perm/sec)   p_kst 1.140333e-01   p_cons 1.926667e-02   p_joint 2.900000e-02

Joint ci ratio: 1.121738e-01	ci left: 2.796083e-02	ci right 3.130791e-02	k: 1184	n:40000
Cons ci ratio: 1.372859e-01	ci left: 1.860214e-02	ci right 2.136817e-02	k: 798	n:40000
KS ci ratio: 5.461370e-02	ci left: 1.109752e-01	ci right 1.172309e-01	k: 4563	n:40000
CDH24   40000 perm   8 sec   (5206 perm/sec)   p_kst 1.140750e-01   p_cons 1.995000e-02   p_joint 2.960000e-02

Joint ci ratio: 1.070863e-01	ci left: 2.470062e-02	ci right 2.751476e-02	k: 1304	n:50000
Cons ci ratio: 1.199879e-01	ci left: 1.964460e-02	ci right 2.217145e-02	k: 1044	n:50000
KS ci ratio: 4.896440e-02	ci left: 1.108311e-01	ci right 1.164139e-01	k: 5680	n:50000
CDH24   50000 perm   10 sec   (5082 perm/sec)   p_kst 1.136000e-01   p_cons 2.088000e-02   p_joint 2.608000e-02

Joint ci ratio: 1.015485e-01	ci left: 2.300138e-02	ci right 2.547826e-02	k: 1453	n:60000
Cons ci ratio: 1.095782e-01	ci left: 1.973783e-02	ci right 2.204217e-02	k: 1252	n:60000
KS ci ratio: 4.481401e-02	ci left: 1.105597e-01	ci right 1.156444e-01	k: 6785	n:60000
CDH24   60000 perm   12 sec   (4963 perm/sec)   p_kst 1.130833e-01   p_cons 2.086667e-02   p_joint 2.421667e-02

Joint ci ratio: 8.666000e-02	ci left: 2.716789e-02	ci right 2.964283e-02	k: 1987	n:70000
Cons ci ratio: 1.005692e-01	ci left: 2.017348e-02	ci right 2.232360e-02	k: 1486	n:70000
KS ci ratio: 4.221773e-02	ci left: 1.073374e-01	ci right 1.119808e-01	k: 7675	n:70000
CDH24   70000 perm   14 sec   (4864 perm/sec)   p_kst 1.096429e-01   p_cons 2.122857e-02   p_joint 2.838571e-02

Joint ci ratio: 9.005275e-02	ci left: 2.209456e-02	ci right 2.419022e-02	k: 1850	n:80000
Cons ci ratio: 1.005679e-01	ci left: 1.769939e-02	ci right 1.958575e-02	k: 1490	n:80000
KS ci ratio: 3.952544e-02	ci left: 1.073193e-01	ci right 1.116591e-01	k: 8758	n:80000
CDH24   80000 perm   17 sec   (4766 perm/sec)   p_kst 1.094750e-01   p_cons 1.862500e-02   p_joint 2.312500e-02

Joint ci ratio: 1.002645e-01	ci left: 1.586201e-02	ci right 1.754712e-02	k: 1502	n:90000
Cons ci ratio: 8.796462e-02	ci left: 2.063839e-02	ci right 2.254818e-02	k: 1942	n:90000
KS ci ratio: 3.716314e-02	ci left: 1.079739e-01	ci right 1.120735e-01	k: 9901	n:90000
CDH24   90000 perm   19 sec   (4680 perm/sec)   p_kst 1.100111e-01   p_cons 2.157778e-02   p_joint 1.668889e-02

Joint ci ratio: 9.644943e-02	ci left: 1.546565e-02	ci right 1.704259e-02	k: 1624	n:100000
Cons ci ratio: 8.372629e-02	ci left: 2.055115e-02	ci right 2.235675e-02	k: 2144	n:100000
KS ci ratio: 3.530335e-02	ci left: 1.078190e-01	ci right 1.117037e-01	k: 10975	n:100000
CDH24   100000 perm   22 sec   (4586 perm/sec)   p_kst 1.097500e-01   p_cons 2.144000e-02   p_joint 1.624000e-02

Outputting figure to mutsig2_images.part000000000034/CDH24.5_2508_100000_0.10975_0.02144_0.01624.png
                gene_name: CDH24
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 38 percent done.
CD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
Cons ci ratio: 2.087943e-02	ci left: 7.707371e-01	ci right 7.871001e-01	k: 7790	n:10000
KS ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
CD5   10000 perm   1 sec   (6686 perm/sec)   p_kst 3.484000e-01   p_cons 7.790000e-01   p_joint 4.868000e-01

Outputting figure to mutsig2_images.part000000000034/CD5.4_1528_10000_0.3484_0.779_0.4868.png
                gene_name: CD5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
CD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
Cons ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
KS ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
CD6   10000 perm   2 sec   (6267 perm/sec)   p_kst 4.152000e-01   p_cons 3.216000e-01   p_joint 3.180000e-01

Outputting figure to mutsig2_images.part000000000034/CD6.4_2059_10000_0.4152_0.3216_0.318.png
                gene_name: CD6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 42 percent done.
CD80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
Cons ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
KS ci ratio: 9.481795e-03	ci left: 9.401429e-01	ci right 9.491959e-01	k: 9448	n:10000
CD80   10000 perm   1 sec   (6816 perm/sec)   p_kst 9.448000e-01   p_cons 2.289000e-01   p_joint 5.882000e-01

Outputting figure to mutsig2_images.part000000000034/CD80.4_887_10000_0.9448_0.2289_0.5882.png
                gene_name: CD80
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 43 percent done.
CD84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
Cons ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
KS ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
CD84   10000 perm   1 sec   (6907 perm/sec)   p_kst 4.377000e-01   p_cons 2.353000e-01   p_joint 2.737000e-01

Outputting figure to mutsig2_images.part000000000034/CD84.4_1070_10000_0.4377_0.2353_0.2737.png
                gene_name: CD84
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 45 percent done.
CD97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
Cons ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
KS ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
CD97   10000 perm   2 sec   (6526 perm/sec)   p_kst 2.934000e-01   p_cons 2.877000e-01   p_joint 3.332000e-01

Outputting figure to mutsig2_images.part000000000034/CD97.4_2588_10000_0.2934_0.2877_0.3332.png
                gene_name: CD97
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 47 percent done.
CDC25A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
Cons ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
KS ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
CDC25A   10000 perm   1 sec   (6676 perm/sec)   p_kst 8.180000e-02   p_cons 7.502000e-01   p_joint 2.017000e-01

Joint ci ratio: 6.489173e-02	ci left: 1.492698e-01	ci right 1.593309e-01	k: 3085	n:20000
Cons ci ratio: 1.614187e-02	ci left: 7.406625e-01	ci right 7.527657e-01	k: 14935	n:20000
KS ci ratio: 9.234391e-02	ci left: 7.882080e-02	ci right 8.650104e-02	k: 1652	n:20000
CDC25A   20000 perm   3 sec   (5977 perm/sec)   p_kst 8.260000e-02   p_cons 7.467500e-01   p_joint 1.542500e-01

Outputting figure to mutsig2_images.part000000000034/CDC25A.4_1635_20000_0.0826_0.74675_0.15425.png
                gene_name: CDC25A
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 48 percent done.
CDCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716135e-02	ci left: 6.663243e-01	ci right 6.847734e-01	k: 6756	n:10000
Cons ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
KS ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
CDCA7   10000 perm   2 sec   (6621 perm/sec)   p_kst 2.775000e-01   p_cons 7.230000e-01   p_joint 6.756000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7.4_1393_10000_0.2775_0.723_0.6756.png
                gene_name: CDCA7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 50 percent done.
CDCA7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
Cons ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
KS ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
CDCA7L   10000 perm   1 sec   (7012 perm/sec)   p_kst 1.918000e-01   p_cons 6.584000e-01   p_joint 3.959000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7L.4_1405_10000_0.1918_0.6584_0.3959.png
                gene_name: CDCA7L
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
CD48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
Cons ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
KS ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
CD48   10000 perm   1 sec   (7534 perm/sec)   p_kst 8.342000e-01   p_cons 3.911000e-01   p_joint 7.114000e-01

Outputting figure to mutsig2_images.part000000000034/CD48.3_748_10000_0.8342_0.3911_0.7114.png
                gene_name: CD48
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 53 percent done.
CD8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
Cons ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
KS ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
CD8B   10000 perm   1 sec   (7456 perm/sec)   p_kst 2.349000e-01   p_cons 2.663000e-01   p_joint 2.265000e-01

Outputting figure to mutsig2_images.part000000000034/CD8B.3_931_10000_0.2349_0.2663_0.2265.png
                gene_name: CD8B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
CD96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
CD96   10000 perm   1 sec   (6753 perm/sec)   p_kst 1.415000e-01   p_cons 1.014000e-01   p_joint 9.270000e-02

Joint ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
Cons ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
KS ci ratio: 6.826001e-02	ci left: 1.366970e-01	ci right 1.464075e-01	k: 2830	n:20000
CD96   20000 perm   3 sec   (6053 perm/sec)   p_kst 1.415000e-01   p_cons 1.021000e-01   p_joint 8.510000e-02

Outputting figure to mutsig2_images.part000000000034/CD96.3_1818_20000_0.1415_0.1021_0.0851.png
                gene_name: CD96
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 57 percent done.
CD99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
CD99   10000 perm   1 sec   (7683 perm/sec)   p_kst 2.617000e-01   p_cons 3.434000e-01   p_joint 3.335000e-01

Outputting figure to mutsig2_images.part000000000034/CD99.3_598_10000_0.2617_0.3434_0.3335.png
                gene_name: CD99
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
CDC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CDC16   10000 perm   2 sec   (6605 perm/sec)   p_kst 1   p_cons 2.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC16.3_1935_10000_1_0.2333_1.png
                gene_name: CDC16
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CDC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
CDC20   10000 perm   1 sec   (6853 perm/sec)   p_kst 9.512000e-01   p_cons 3.519000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC20.3_1540_10000_0.9512_0.3519_1.png
                gene_name: CDC20
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CDC20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
CDC20B   10000 perm   1 sec   (6984 perm/sec)   p_kst 6.070000e-02   p_cons 6.230000e-02   p_joint 5.590000e-02

Joint ci ratio: 9.183013e-02	ci left: 7.965288e-02	ci right 8.736872e-02	k: 1669	n:20000
Cons ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
KS ci ratio: 1.058244e-01	ci left: 6.079280e-02	ci right 6.763456e-02	k: 1283	n:20000
CDC20B   20000 perm   3 sec   (6287 perm/sec)   p_kst 6.415000e-02   p_cons 6.200000e-02   p_joint 8.345000e-02

Joint ci ratio: 1.004970e-01	ci left: 4.583599e-02	ci right 5.071864e-02	k: 1447	n:30000
Cons ci ratio: 8.369824e-02	ci left: 6.527460e-02	ci right 7.100938e-02	k: 2043	n:30000
KS ci ratio: 8.645384e-02	ci left: 6.135404e-02	ci right 6.693073e-02	k: 1923	n:30000
CDC20B   30000 perm   5 sec   (5982 perm/sec)   p_kst 6.410000e-02   p_cons 6.810000e-02   p_joint 4.823333e-02

Joint ci ratio: 1.078858e-01	ci left: 3.022373e-02	ci right 3.369465e-02	k: 1277	n:40000
Cons ci ratio: 7.274798e-02	ci left: 6.520778e-02	ci right 7.015521e-02	k: 2706	n:40000
KS ci ratio: 7.534861e-02	ci left: 6.098211e-02	ci right 6.578152e-02	k: 2534	n:40000
CDC20B   40000 perm   7 sec   (5774 perm/sec)   p_kst 6.335000e-02   p_cons 6.765000e-02   p_joint 3.192500e-02

Joint ci ratio: 7.290485e-02	ci left: 5.266377e-02	ci right 5.666813e-02	k: 2732	n:50000
Cons ci ratio: 6.454518e-02	ci left: 6.647828e-02	ci right 7.093195e-02	k: 3434	n:50000
KS ci ratio: 6.715391e-02	ci left: 6.165349e-02	ci right 6.595732e-02	k: 3189	n:50000
CDC20B   50000 perm   9 sec   (5599 perm/sec)   p_kst 6.378000e-02   p_cons 6.868000e-02   p_joint 5.464000e-02

Outputting figure to mutsig2_images.part000000000034/CDC20B.3_1608_50000_0.06378_0.06868_0.05464.png
                gene_name: CDC20B
               theta_stop: 0.073 
                    nperm: 50000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 63 percent done.
CDC25C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
CDC25C   10000 perm   1 sec   (7073 perm/sec)   p_kst 8.634000e-01   p_cons 6.521000e-01   p_joint 8.969000e-01

Outputting figure to mutsig2_images.part000000000034/CDC25C.3_1474_10000_0.8634_0.6521_0.8969.png
                gene_name: CDC25C
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 65 percent done.
CDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
Cons ci ratio: 8.288008e-02	ci left: 1.751695e-01	ci right 1.904157e-01	k: 1827	n:10000
KS ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
CDC27   10000 perm   2 sec   (6351 perm/sec)   p_kst 2.327000e-01   p_cons 1.827000e-01   p_joint 3.299000e-01

Outputting figure to mutsig2_images.part000000000034/CDC27.3_2569_10000_0.2327_0.1827_0.3299.png
                gene_name: CDC27
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 67 percent done.
CDC42EP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
Cons ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
KS ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
CDC42EP3   10000 perm   1 sec   (7629 perm/sec)   p_kst 1.500000e-01   p_cons 4.170000e-02   p_joint 1.313000e-01

Joint ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
Cons ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
KS ci ratio: 6.571201e-02	ci left: 1.460638e-01	ci right 1.560379e-01	k: 3020	n:20000
CDC42EP3   20000 perm   3 sec   (6722 perm/sec)   p_kst 1.510000e-01   p_cons 4.280000e-02   p_joint 1.326000e-01

Joint ci ratio: 5.765029e-02	ci left: 1.296703e-01	ci right 1.374009e-01	k: 4005	n:30000
Cons ci ratio: 1.080431e-01	ci left: 3.975795e-02	ci right 4.433128e-02	k: 1260	n:30000
KS ci ratio: 5.349757e-02	ci left: 1.477238e-01	ci right 1.558771e-01	k: 4553	n:30000
CDC42EP3   30000 perm   5 sec   (6387 perm/sec)   p_kst 1.517667e-01   p_cons 4.200000e-02   p_joint 1.335000e-01

Joint ci ratio: 4.899053e-02	ci left: 1.345844e-01	ci right 1.413682e-01	k: 5518	n:40000
Cons ci ratio: 9.346211e-02	ci left: 4.015283e-02	ci right 4.411399e-02	k: 1684	n:40000
KS ci ratio: 4.646125e-02	ci left: 1.475536e-01	ci right 1.545971e-01	k: 6042	n:40000
CDC42EP3   40000 perm   6 sec   (6159 perm/sec)   p_kst 1.510500e-01   p_cons 4.210000e-02   p_joint 1.379500e-01

Outputting figure to mutsig2_images.part000000000034/CDC42EP3.3_769_40000_0.15105_0.0421_0.13795.png
                gene_name: CDC42EP3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
CDC5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
CDC5L   10000 perm   2 sec   (6411 perm/sec)   p_kst 4.500000e-02   p_cons 2.120000e-02   p_joint 5.330000e-02

Joint ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
Cons ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
CDC5L   20000 perm   3 sec   (5781 perm/sec)   p_kst 4.710000e-02   p_cons 2.185000e-02   p_joint 2.410000e-02

Joint ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
Cons ci ratio: 1.503145e-01	ci left: 2.049831e-02	ci right 2.386178e-02	k: 664	n:30000
KS ci ratio: 1.019479e-01	ci left: 4.456738e-02	ci right 4.938751e-02	k: 1408	n:30000
CDC5L   30000 perm   5 sec   (5529 perm/sec)   p_kst 4.693333e-02   p_cons 2.213333e-02   p_joint 1.660000e-02

Joint ci ratio: 1.266197e-01	ci left: 2.191651e-02	ci right 2.490323e-02	k: 935	n:40000
Cons ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
KS ci ratio: 8.959010e-02	ci left: 4.362508e-02	ci right 4.774120e-02	k: 1826	n:40000
CDC5L   40000 perm   7 sec   (5349 perm/sec)   p_kst 4.565000e-02   p_cons 2.145000e-02   p_joint 2.337500e-02

Joint ci ratio: 1.184345e-01	ci left: 2.016881e-02	ci right 2.272717e-02	k: 1071	n:50000
Cons ci ratio: 1.190602e-01	ci left: 1.995522e-02	ci right 2.250079e-02	k: 1060	n:50000
KS ci ratio: 7.987124e-02	ci left: 4.412136e-02	ci right 4.781158e-02	k: 2297	n:50000
CDC5L   50000 perm   10 sec   (5204 perm/sec)   p_kst 4.594000e-02   p_cons 2.120000e-02   p_joint 2.142000e-02

Joint ci ratio: 9.794896e-02	ci left: 2.472504e-02	ci right 2.728775e-02	k: 1559	n:60000
Cons ci ratio: 1.081758e-01	ci left: 2.025693e-02	ci right 2.258968e-02	k: 1284	n:60000
KS ci ratio: 7.269972e-02	ci left: 4.453399e-02	ci right 4.791008e-02	k: 2772	n:60000
CDC5L   60000 perm   12 sec   (5089 perm/sec)   p_kst 4.620000e-02   p_cons 2.140000e-02   p_joint 2.598333e-02

Joint ci ratio: 9.096584e-02	ci left: 2.466604e-02	ci right 2.703063e-02	k: 1808	n:70000
Cons ci ratio: 1.008467e-01	ci left: 2.006202e-02	ci right 2.220650e-02	k: 1478	n:70000
KS ci ratio: 6.723252e-02	ci left: 4.475502e-02	ci right 4.788272e-02	k: 3241	n:70000
CDC5L   70000 perm   14 sec   (4984 perm/sec)   p_kst 4.630000e-02   p_cons 2.111429e-02   p_joint 2.582857e-02

Joint ci ratio: 8.904831e-02	ci left: 2.259584e-02	ci right 2.471390e-02	k: 1891	n:80000
Cons ci ratio: 9.391680e-02	ci left: 2.031064e-02	ci right 2.232429e-02	k: 1704	n:80000
KS ci ratio: 6.280277e-02	ci left: 4.497722e-02	ci right 4.790578e-02	k: 3714	n:80000
CDC5L   80000 perm   16 sec   (4890 perm/sec)   p_kst 4.642500e-02   p_cons 2.130000e-02   p_joint 2.363750e-02

Outputting figure to mutsig2_images.part000000000034/CDC5L.3_2473_80000_0.046425_0.0213_0.023637.png
                gene_name: CDC5L
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 70 percent done.
CDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.127109e-02	ci left: 4.643719e-01	ci right 4.840431e-01	k: 4742	n:10000
KS ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
CDC7   10000 perm   1 sec   (6886 perm/sec)   p_kst 6.762000e-01   p_cons 4.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC7.3_1769_10000_0.6762_0.4742_1.png
                gene_name: CDC7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
CDH16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
Cons ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
KS ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
CDH16   10000 perm   2 sec   (6402 perm/sec)   p_kst 5.350000e-01   p_cons 4.641000e-01   p_joint 7.328000e-01

Outputting figure to mutsig2_images.part000000000034/CDH16.3_2558_10000_0.535_0.4641_0.7328.png
                gene_name: CDH16
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 73 percent done.
CD53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
Cons ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
KS ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
CD53   10000 perm   1 sec   (7740 perm/sec)   p_kst 8.955000e-01   p_cons 2.544000e-01   p_joint 4.866000e-01

Outputting figure to mutsig2_images.part000000000034/CD53.2_688_10000_0.8955_0.2544_0.4866.png
                gene_name: CD53
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 75 percent done.
CD55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
CD55   10000 perm   1 sec   (7389 perm/sec)   p_kst 4.685000e-01   p_cons 3.600000e-02   p_joint 1.312000e-01

Joint ci ratio: 1.185293e-01	ci left: 4.876885e-02	ci right 5.496225e-02	k: 1036	n:20000
Cons ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
KS ci ratio: 2.939693e-02	ci left: 4.636622e-01	ci right 4.775464e-01	k: 9412	n:20000
CD55   20000 perm   3 sec   (6542 perm/sec)   p_kst 4.706000e-01   p_cons 3.120000e-02   p_joint 5.180000e-02

Joint ci ratio: 9.614550e-02	ci left: 4.997038e-02	ci right 5.505005e-02	k: 1574	n:30000
Cons ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
KS ci ratio: 2.399832e-02	ci left: 4.650382e-01	ci right 4.763675e-01	k: 14121	n:30000
CD55   30000 perm   5 sec   (6224 perm/sec)   p_kst 4.707000e-01   p_cons 3.086667e-02   p_joint 5.246667e-02

Joint ci ratio: 8.381377e-02	ci left: 4.967274e-02	ci right 5.404261e-02	k: 2073	n:40000
Cons ci ratio: 1.105500e-01	ci left: 2.878783e-02	ci right 3.218078e-02	k: 1218	n:40000
KS ci ratio: 2.075010e-02	ci left: 4.665978e-01	ci right 4.764064e-01	k: 18860	n:40000
CD55   40000 perm   7 sec   (6015 perm/sec)   p_kst 4.715000e-01   p_cons 3.045000e-02   p_joint 5.182500e-02

Joint ci ratio: 7.807195e-02	ci left: 4.612295e-02	ci right 4.988975e-02	k: 2399	n:50000
Cons ci ratio: 9.867060e-02	ci left: 2.908813e-02	ci right 3.212669e-02	k: 1529	n:50000
KS ci ratio: 1.853430e-02	ci left: 4.677959e-01	ci right 4.765673e-01	k: 23609	n:50000
CD55   50000 perm   9 sec   (5840 perm/sec)   p_kst 4.721800e-01   p_cons 3.058000e-02   p_joint 4.798000e-02

Outputting figure to mutsig2_images.part000000000034/CD55.2_1367_50000_0.47218_0.03058_0.04798.png
                gene_name: CD55
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 77 percent done.
CD69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
Cons ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
KS ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
CD69   10000 perm   1 sec   (7930 perm/sec)   p_kst 2.329000e-01   p_cons 2.204000e-01   p_joint 1.205000e-01

Joint ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
Cons ci ratio: 5.313732e-02	ci left: 2.081844e-01	ci right 2.195989e-01	k: 4277	n:20000
KS ci ratio: 5.036807e-02	ci left: 2.265607e-01	ci right 2.383172e-01	k: 4648	n:20000
CD69   20000 perm   3 sec   (6987 perm/sec)   p_kst 2.324000e-01   p_cons 2.138500e-01   p_joint 1.015500e-01

Outputting figure to mutsig2_images.part000000000034/CD69.2_620_20000_0.2324_0.21385_0.10155.png
                gene_name: CD69
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 78 percent done.
CD82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017574e-03	ci left: 9.875220e-01	ci right 9.915852e-01	k: 9897	n:10000
Cons ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
CD82   10000 perm   1 sec   (7709 perm/sec)   p_kst 9.349000e-01   p_cons 3.632000e-01   p_joint 9.897000e-01

Outputting figure to mutsig2_images.part000000000034/CD82.2_836_10000_0.9349_0.3632_0.9897.png
                gene_name: CD82
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
CD8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
CD8A   10000 perm   1 sec   (7861 perm/sec)   p_kst 8.636000e-01   p_cons 6.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD8A.2_732_10000_0.8636_0.6542_1.png
                gene_name: CD8A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CDADC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
Cons ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
CDADC1   10000 perm   1 sec   (7342 perm/sec)   p_kst 3.563000e-01   p_cons 4.690000e-01   p_joint 5.609000e-01

Outputting figure to mutsig2_images.part000000000034/CDADC1.2_1585_10000_0.3563_0.469_0.5609.png
                gene_name: CDADC1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 83 percent done.
CDAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
CDAN1   10000 perm   2 sec   (6239 perm/sec)   p_kst 4.950000e-01   p_cons 3.127000e-01   p_joint 3.812000e-01

Outputting figure to mutsig2_images.part000000000034/CDAN1.2_3796_10000_0.495_0.3127_0.3812.png
                gene_name: CDAN1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 85 percent done.
CDC123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
Cons ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
KS ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
CDC123   10000 perm   1 sec   (7636 perm/sec)   p_kst 6.751000e-01   p_cons 5.047000e-01   p_joint 9.596000e-01

Outputting figure to mutsig2_images.part000000000034/CDC123.2_1063_10000_0.6751_0.5047_0.9596.png
                gene_name: CDC123
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 87 percent done.
CDC37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
CDC37   10000 perm   1 sec   (7729 perm/sec)   p_kst 4.686000e-01   p_cons 4.266000e-01   p_joint 7.771000e-01

Outputting figure to mutsig2_images.part000000000034/CDC37.2_1169_10000_0.4686_0.4266_0.7771.png
                gene_name: CDC37
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 88 percent done.
CDC37L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
Cons ci ratio: 8.154559e-02	ci left: 1.799903e-01	ci right 1.953921e-01	k: 1876	n:10000
KS ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
CDC37L1   10000 perm   1 sec   (7624 perm/sec)   p_kst 6.014000e-01   p_cons 1.876000e-01   p_joint 3.883000e-01

Outputting figure to mutsig2_images.part000000000034/CDC37L1.2_1042_10000_0.6014_0.1876_0.3883.png
                gene_name: CDC37L1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 90 percent done.
CDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
KS ci ratio: 1.128739e-02	ci left: 9.181162e-01	ci right 9.286356e-01	k: 9235	n:10000
CDC40   10000 perm   1 sec   (7091 perm/sec)   p_kst 9.235000e-01   p_cons 1.110000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
KS ci ratio: 7.897463e-03	ci left: 9.212114e-01	ci right 9.285645e-01	k: 18499	n:20000
CDC40   20000 perm   3 sec   (6340 perm/sec)   p_kst 9.249500e-01   p_cons 1.092000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC40.2_1800_20000_0.92495_0.1092_1.png
                gene_name: CDC40
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
CDC42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
Cons ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
KS ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
CDC42   10000 perm   1 sec   (7788 perm/sec)   p_kst 1.923000e-01   p_cons 7.307000e-01   p_joint 3.228000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42.2_690_10000_0.1923_0.7307_0.3228.png
                gene_name: CDC42
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 93 percent done.
CDC42BPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
KS ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
CDC42BPB   10000 perm   2 sec   (5859 perm/sec)   p_kst 5.514000e-01   p_cons 4.470000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
KS ci ratio: 2.486886e-02	ci left: 5.470786e-01	ci right 5.609057e-01	k: 11080	n:20000
CDC42BPB   20000 perm   4 sec   (5286 perm/sec)   p_kst 5.540000e-01   p_cons 4.385000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.054090e-01	ci left: 4.173925e-02	ci right 4.641622e-02	k: 1321	n:30000
KS ci ratio: 2.036747e-02	ci left: 5.468518e-01	ci right 5.581380e-01	k: 16575	n:30000
CDC42BPB   30000 perm   6 sec   (5078 perm/sec)   p_kst 5.525000e-01   p_cons 4.403333e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 9.076769e-02	ci left: 4.252433e-02	ci right 4.659212e-02	k: 1781	n:40000
KS ci ratio: 1.769161e-02	ci left: 5.461346e-01	ci right 5.559080e-01	k: 22041	n:40000
CDC42BPB   40000 perm   8 sec   (4932 perm/sec)   p_kst 5.510250e-01   p_cons 4.452500e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC42BPB.2_5284_40000_0.55102_0.044525_1.png
                gene_name: CDC42BPB
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CDC42BPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
Cons ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
CDC42BPG   10000 perm   2 sec   (5886 perm/sec)   p_kst 1.086000e-01   p_cons 7.043000e-01   p_joint 9.932000e-01

Joint ci ratio: 2.281284e-02	ci left: 5.893112e-01	ci right 6.029608e-01	k: 11923	n:20000
Cons ci ratio: 1.783506e-02	ci left: 7.008387e-01	ci right 7.135010e-01	k: 14144	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
CDC42BPG   20000 perm   4 sec   (5320 perm/sec)   p_kst 1.082500e-01   p_cons 7.072000e-01   p_joint 5.961500e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPG.2_4804_20000_0.10825_0.7072_0.59615.png
                gene_name: CDC42BPG
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 97 percent done.
CDCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
Cons ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
CDCA4   10000 perm   1 sec   (8162 perm/sec)   p_kst 1.089000e-01   p_cons 5.340000e-01   p_joint 8.361000e-01

Joint ci ratio: 2.427557e-02	ci left: 5.589968e-01	ci right 5.727841e-01	k: 11318	n:20000
Cons ci ratio: 2.684879e-02	ci left: 5.089471e-01	ci right 5.228483e-01	k: 10318	n:20000
KS ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
CDCA4   20000 perm   3 sec   (7127 perm/sec)   p_kst 1.070000e-01   p_cons 5.159000e-01   p_joint 5.659000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA4.2_730_20000_0.107_0.5159_0.5659.png
                gene_name: CDCA4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 98 percent done.
CDCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
Cons ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
KS ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
CDCP2   10000 perm   1 sec   (7379 perm/sec)   p_kst 7.541000e-01   p_cons 1.954000e-01   p_joint 5.444000e-01

Outputting figure to mutsig2_images.part000000000034/CDCP2.2_1366_10000_0.7541_0.1954_0.5444.png
                gene_name: CDCP2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000034
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 34 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4421814: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000035> was used as the working directory.
Started at Wed Oct 24 17:35:17 2012
Results reported at Wed Oct 24 20:42:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000035.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000035.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 35  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000035.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11237.97 sec.
    Max Memory :      5316 MB
    Max Swap   :      7778 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
35
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 35
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 35: processing genes 3077 - 3166
Calculating significance of each gene.
Using projection method.
3077	CDH26	6.310552e-01
3078	CDH3	9.827737e-01
3079	CDH4	9.936639e-01
3080	CDH5	1
3081	CDH6	1
3082	CDH7	1
3083	CDH8	7.475129e-01
3084	CDH9	1
3085	CDHR1	3.393892e-02
3086	CDHR2	9.993887e-01
3087	CDHR3	4.030506e-01
3088	CDHR5	1
3089	CDIPT	6.355273e-01
3090	CDK1	3.878684e-01
3091	CDK10	7.054225e-01
3092	CDK11A	8.984840e-01
3093	CDK11B	3.435788e-01
3094	CDK12	9.411959e-01
3095	CDK13	9.163650e-01
3096	CDK14	6.850192e-01
3097	CDK15	4.453682e-02
3098	CDK16	1
3099	CDK17	1
3100	CDK18	9.053506e-01
3101	CDK19	9.699702e-01
3102	CDK2	8.776379e-01
3103	CDK20	8.287214e-01
3104	CDK2AP1	5.563732e-01
3105	CDK2AP2	1
3106	CDK3	1
3107	CDK4	1
3108	CDK5	6.967618e-01
3109	CDK5R1	1
3110	CDK5R2	5.974852e-01
3111	CDK5RAP1	9.054177e-01
3112	CDK5RAP2	9.987739e-01
3113	CDK5RAP3	4.862436e-01
3114	CDK6	8.124486e-01
In gene CDK7 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 1089    n = 1	mu =   5.69e-07
3115	CDK7	1.539768e-01
3116	CDK8	5.201548e-01
3117	CDK9	7.229067e-01
3118	CDKAL1	4.606137e-01
3119	CDKL1	1
3120	CDKL2	9.220059e-01
3121	CDKL3	2.950738e-01
3122	CDKL4	2.137933e-01
3123	CDKL5	1
3124	CDKN1A	6.763484e-01
3125	CDKN1B	8.104828e-02
3126	CDKN2A	5.104677e-09
3127	CDKN2AIP	1
3128	CDKN2AIPNL	1
3129	CDKN2B	1
3130	CDKN2C	1
3131	CDKN2D	3.243888e-01
3132	CDKN3	1
3133	CDNF	8.730573e-02
3134	CDO1	1
3135	CDON	9.985495e-01
3136	CDR1	5.242410e-02
3137	CDR2	1
3138	CDRT1	1
3139	CDRT15	4.063369e-01
3140	CDRT4	1
3141	CDS1	6.867847e-01
3142	CDS2	7.744787e-01
3143	CDSN	1
3144	CDT1	6.957727e-01
3145	CDV3	4.971156e-01
3146	CDX1	4.902221e-01
3147	CDX2	6.055183e-01
3148	CDX4	2.834865e-01
3149	CDYL	4.250948e-02
3150	CDYL2	8.832734e-01
3151	CEACAM1	8.563508e-01
3152	CEACAM16	1
3153	CEACAM18	6.849851e-01
3154	CEACAM19	4.896142e-01
3155	CEACAM20	3.803759e-01
3156	CEACAM21	7.965332e-01
3157	CEACAM3	3.540877e-01
3158	CEACAM4	5.469330e-01
3159	CEACAM5	1
3160	CEACAM6	7.921788e-01
3161	CEACAM7	1
3162	CEACAM8	6.518889e-01
3163	CEBPB	1
3164	CEBPD	1
3165	CEBPE	8.269311e-01
3166	CEBPG	1
Done

Running MutSig 2:
Scatter job 35: processing genes 3077 - 3166
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH9
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
CDH9   10000 perm   3 sec   (3469 perm/sec)   p_kst 3.792000e-01   p_cons 1.080000e-02   p_joint 5.110000e-02

Joint ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
Cons ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
KS ci ratio: 3.553413e-02	ci left: 3.715222e-01	ci right 3.850133e-01	k: 7565	n:20000
CDH9   20000 perm   8 sec   (2362 perm/sec)   p_kst 3.782500e-01   p_cons 1.020000e-02   p_joint 5.635000e-02

Joint ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
Cons ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
KS ci ratio: 2.857433e-02	ci left: 3.799538e-01	ci right 3.910017e-01	k: 11564	n:30000
CDH9   30000 perm   11 sec   (2765 perm/sec)   p_kst 3.854667e-01   p_cons 1.093333e-02   p_joint 4.003333e-02

Joint ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
Cons ci ratio: 1.871401e-01	ci left: 9.834062e-03	ci right 1.188788e-02	k: 433	n:40000
KS ci ratio: 2.444837e-02	ci left: 3.864380e-01	ci right 3.960278e-01	k: 15649	n:40000
CDH9   40000 perm   13 sec   (3010 perm/sec)   p_kst 3.912250e-01   p_cons 1.082500e-02   p_joint 3.202500e-02

Joint ci ratio: 9.820806e-02	ci left: 2.936144e-02	ci right 3.241334e-02	k: 1543	n:50000
Cons ci ratio: 1.673057e-01	ci left: 9.950851e-03	ci right 1.178660e-02	k: 542	n:50000
KS ci ratio: 2.191555e-02	ci left: 3.859009e-01	ci right 3.944719e-01	k: 19509	n:50000
CDH9   50000 perm   16 sec   (3165 perm/sec)   p_kst 3.901800e-01   p_cons 1.084000e-02   p_joint 3.086000e-02

Joint ci ratio: 9.301514e-02	ci left: 2.741113e-02	ci right 3.010138e-02	k: 1724	n:60000
Cons ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
KS ci ratio: 1.995919e-02	ci left: 3.873919e-01	ci right 3.952186e-01	k: 23478	n:60000
CDH9   60000 perm   18 sec   (3262 perm/sec)   p_kst 3.913000e-01   p_cons 1.045000e-02   p_joint 2.873333e-02

Joint ci ratio: 7.821163e-02	ci left: 3.328629e-02	ci right 3.600960e-02	k: 2424	n:70000
Cons ci ratio: 1.435335e-01	ci left: 9.785660e-03	ci right 1.131246e-02	k: 737	n:70000
KS ci ratio: 1.844661e-02	ci left: 3.885092e-01	ci right 3.957569e-01	k: 27449	n:70000
CDH9   70000 perm   21 sec   (3326 perm/sec)   p_kst 3.921286e-01   p_cons 1.052857e-02   p_joint 3.462857e-02

Joint ci ratio: 7.621029e-02	ci left: 3.079115e-02	ci right 3.324294e-02	k: 2560	n:80000
Cons ci ratio: 1.330279e-01	ci left: 1.002276e-02	ci right 1.146305e-02	k: 858	n:80000
KS ci ratio: 1.721296e-02	ci left: 3.899127e-01	ci right 3.966950e-01	k: 31464	n:80000
CDH9   80000 perm   24 sec   (3366 perm/sec)   p_kst 3.933000e-01   p_cons 1.072500e-02   p_joint 3.200000e-02

Joint ci ratio: 7.621250e-02	ci left: 2.746618e-02	ci right 2.965324e-02	k: 2569	n:90000
Cons ci ratio: 1.265079e-01	ci left: 9.887377e-03	ci right 1.123334e-02	k: 949	n:90000
KS ci ratio: 1.619500e-02	ci left: 3.910940e-01	ci right 3.974906e-01	k: 35486	n:90000
CDH9   90000 perm   27 sec   (3391 perm/sec)   p_kst 3.942889e-01   p_cons 1.054444e-02   p_joint 2.854444e-02

Joint ci ratio: 6.745231e-02	ci left: 3.156692e-02	ci right 3.378030e-02	k: 3266	n:100000
Cons ci ratio: 1.212737e-01	ci left: 9.712558e-03	ci right 1.097609e-02	k: 1033	n:100000
KS ci ratio: 1.543816e-02	ci left: 3.889624e-01	ci right 3.950239e-01	k: 39199	n:100000
CDH9   100000 perm   29 sec   (3402 perm/sec)   p_kst 3.919900e-01   p_cons 1.033000e-02   p_joint 3.266000e-02

Joint ci ratio: 6.344869e-02	ci left: 3.247128e-02	ci right 3.460796e-02	k: 3688	n:110000
Cons ci ratio: 1.151908e-01	ci left: 9.817709e-03	ci right 1.102649e-02	k: 1145	n:110000
KS ci ratio: 1.473881e-02	ci left: 3.884869e-01	ci right 3.942643e-01	k: 43051	n:110000
CDH9   110000 perm   32 sec   (3402 perm/sec)   p_kst 3.913727e-01   p_cons 1.040909e-02   p_joint 3.352727e-02

Joint ci ratio: 6.332816e-02	ci left: 2.996092e-02	ci right 3.192850e-02	k: 3712	n:120000
Cons ci ratio: 1.095446e-01	ci left: 9.979615e-03	ci right 1.114422e-02	k: 1266	n:120000
KS ci ratio: 1.410882e-02	ci left: 3.886953e-01	ci right 3.942266e-01	k: 46975	n:120000
CDH9   120000 perm   35 sec   (3397 perm/sec)   p_kst 3.914583e-01   p_cons 1.055000e-02   p_joint 3.093333e-02

Joint ci ratio: 5.916037e-02	ci left: 3.170189e-02	ci right 3.364211e-02	k: 4246	n:130000
Cons ci ratio: 1.054641e-01	ci left: 9.960496e-03	ci right 1.107688e-02	k: 1366	n:130000
KS ci ratio: 1.355678e-02	ci left: 3.887532e-01	ci right 3.940670e-01	k: 50883	n:130000
CDH9   130000 perm   38 sec   (3386 perm/sec)   p_kst 3.914077e-01   p_cons 1.050769e-02   p_joint 3.266154e-02

Joint ci ratio: 5.568588e-02	ci left: 3.323294e-02	ci right 3.514356e-02	k: 4785	n:140000
Cons ci ratio: 1.017030e-01	ci left: 9.965690e-03	ci right 1.104044e-02	k: 1469	n:140000
KS ci ratio: 1.307150e-02	ci left: 3.885639e-01	ci right 3.936835e-01	k: 54757	n:140000
CDH9   140000 perm   42 sec   (3370 perm/sec)   p_kst 3.911214e-01   p_cons 1.049286e-02   p_joint 3.417857e-02

Joint ci ratio: 5.274111e-02	ci left: 3.458240e-02	ci right 3.646227e-02	k: 5327	n:150000
Cons ci ratio: 9.794072e-02	ci left: 1.004886e-02	ci right 1.109019e-02	k: 1584	n:150000
KS ci ratio: 1.262019e-02	ci left: 3.889555e-01	ci right 3.939020e-01	k: 58714	n:150000
CDH9   150000 perm   45 sec   (3350 perm/sec)   p_kst 3.914267e-01   p_cons 1.056000e-02   p_joint 3.551333e-02

Outputting figure to mutsig2_images.part000000000035/CDH9.29_2414_150000_0.39143_0.01056_0.035513.png
                gene_name: CDH9
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.036 

Current progress: 2 percent done.
CDH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
Cons ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
KS ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
CDH6   10000 perm   2 sec   (4579 perm/sec)   p_kst 7.130000e-01   p_cons 8.980000e-02   p_joint 4.607000e-01

Joint ci ratio: 3.819291e-02	ci left: 3.383600e-01	ci right 3.515851e-01	k: 6899	n:20000
Cons ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
KS ci ratio: 1.858950e-02	ci left: 6.832866e-01	ci right 6.961582e-01	k: 13795	n:20000
CDH6   20000 perm   5 sec   (4318 perm/sec)   p_kst 6.897500e-01   p_cons 8.730000e-02   p_joint 3.449500e-01

Outputting figure to mutsig2_images.part000000000035/CDH6.26_2417_20000_0.68975_0.0873_0.34495.png
                gene_name: CDH6
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 4 percent done.
CDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
CDH8   10000 perm   2 sec   (4749 perm/sec)   p_kst 6.700000e-02   p_cons 6.860000e-02   p_joint 3.720000e-02

Joint ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
Cons ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
KS ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
CDH8   20000 perm   5 sec   (4398 perm/sec)   p_kst 6.780000e-02   p_cons 6.670000e-02   p_joint 4.550000e-02

Joint ci ratio: 1.272395e-01	ci left: 2.871225e-02	ci right 3.264600e-02	k: 919	n:30000
Cons ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
KS ci ratio: 8.511445e-02	ci left: 6.321594e-02	ci right 6.886846e-02	k: 1980	n:30000
CDH8   30000 perm   7 sec   (4334 perm/sec)   p_kst 6.600000e-02   p_cons 6.416667e-02   p_joint 3.063333e-02

Joint ci ratio: 1.251221e-01	ci left: 2.244957e-02	ci right 2.547008e-02	k: 957	n:40000
Cons ci ratio: 7.453572e-02	ci left: 6.225932e-02	ci right 6.710411e-02	k: 2586	n:40000
KS ci ratio: 7.353780e-02	ci left: 6.388080e-02	ci right 6.878239e-02	k: 2652	n:40000
CDH8   40000 perm   9 sec   (4271 perm/sec)   p_kst 6.630000e-02   p_cons 6.465000e-02   p_joint 2.392500e-02

Joint ci ratio: 9.416197e-02	ci left: 3.192039e-02	ci right 3.509407e-02	k: 1674	n:50000
Cons ci ratio: 6.660913e-02	ci left: 6.261817e-02	ci right 6.695252e-02	k: 3238	n:50000
KS ci ratio: 6.593688e-02	ci left: 6.383899e-02	ci right 6.821156e-02	k: 3300	n:50000
CDH8   50000 perm   12 sec   (4208 perm/sec)   p_kst 6.600000e-02   p_cons 6.476000e-02   p_joint 3.348000e-02

Outputting figure to mutsig2_images.part000000000035/CDH8.20_2444_50000_0.066_0.06476_0.03348.png
                gene_name: CDH8
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 6 percent done.
CDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.177929e-02	ci left: 4.582806e-01	ci right 4.779380e-01	k: 4681	n:10000
Cons ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
KS ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
CDH7   10000 perm   2 sec   (5694 perm/sec)   p_kst 4.985000e-01   p_cons 2.835000e-01   p_joint 4.681000e-01

Outputting figure to mutsig2_images.part000000000035/CDH7.16_2402_10000_0.4985_0.2835_0.4681.png
                gene_name: CDH7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 8 percent done.
CDKN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
CDKN2A   10000 perm   2 sec   (5736 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
CDKN2A   20000 perm   4 sec   (5198 perm/sec)   p_kst 1.000000e-04   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
CDKN2A   30000 perm   6 sec   (4969 perm/sec)   p_kst 6.666667e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
CDKN2A   40000 perm   8 sec   (4807 perm/sec)   p_kst 5.000000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
CDKN2A   50000 perm   11 sec   (4701 perm/sec)   p_kst 4.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
CDKN2A   60000 perm   13 sec   (4612 perm/sec)   p_kst 3.333333e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
CDKN2A   70000 perm   15 sec   (4518 perm/sec)   p_kst 2.857143e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.263156e+00	ci left: 3.027630e-06	ci right 9.030565e-05	k: 2	n:80000
CDKN2A   80000 perm   18 sec   (4432 perm/sec)   p_kst 2.500000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.263163e+00	ci left: 2.691226e-06	ci right 8.027198e-05	k: 2	n:90000
CDKN2A   90000 perm   21 sec   (4355 perm/sec)   p_kst 2.222222e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 1.959951e+00	ci left: 6.186764e-06	ci right 8.767020e-05	k: 3	n:100000
CDKN2A   100000 perm   23 sec   (4285 perm/sec)   p_kst 3.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 1.753029e+00	ci left: 9.907953e-06	ci right 9.310271e-05	k: 4	n:110000
CDKN2A   110000 perm   26 sec   (4215 perm/sec)   p_kst 3.636364e-05   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 1.753033e+00	ci left: 9.082284e-06	ci right 8.534435e-05	k: 4	n:120000
CDKN2A   120000 perm   29 sec   (4150 perm/sec)   p_kst 3.333333e-05   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 1.753037e+00	ci left: 8.383641e-06	ci right 7.877956e-05	k: 4	n:130000
CDKN2A   130000 perm   32 sec   (4085 perm/sec)   p_kst 3.076923e-05   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 1.600293e+00	ci left: 1.159643e-05	ci right 8.334324e-05	k: 5	n:140000
CDKN2A   140000 perm   35 sec   (4020 perm/sec)   p_kst 3.571429e-05   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 1.600296e+00	ci left: 1.082333e-05	ci right 7.778715e-05	k: 5	n:150000
CDKN2A   150000 perm   38 sec   (3961 perm/sec)   p_kst 3.333333e-05   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 1.600298e+00	ci left: 1.014687e-05	ci right 7.292556e-05	k: 5	n:160000
CDKN2A   160000 perm   41 sec   (3903 perm/sec)   p_kst 3.125000e-05   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
CDKN2A   170000 perm   44 sec   (3846 perm/sec)   p_kst 3.529412e-05   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 1.481588e+00	ci left: 1.223284e-05	ci right 7.255121e-05	k: 6	n:180000
CDKN2A   180000 perm   47 sec   (3791 perm/sec)   p_kst 3.333333e-05   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 1.385896e+00	ci left: 1.481256e-05	ci right 7.590733e-05	k: 7	n:190000
CDKN2A   190000 perm   51 sec   (3739 perm/sec)   p_kst 3.684211e-05   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 1.385898e+00	ci left: 1.407193e-05	ci right 7.211204e-05	k: 7	n:200000
CDKN2A   200000 perm   54 sec   (3690 perm/sec)   p_kst 3.500000e-05   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 1.385900e+00	ci left: 1.340183e-05	ci right 6.867819e-05	k: 7	n:210000
CDKN2A   210000 perm   58 sec   (3642 perm/sec)   p_kst 3.333333e-05   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 1.385901e+00	ci left: 1.279265e-05	ci right 6.555651e-05	k: 7	n:220000
CDKN2A   220000 perm   61 sec   (3598 perm/sec)   p_kst 3.181818e-05   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 1.385902e+00	ci left: 1.223645e-05	ci right 6.270627e-05	k: 7	n:230000
CDKN2A   230000 perm   65 sec   (3558 perm/sec)   p_kst 3.043478e-05   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 1.306639e+00	ci left: 1.439107e-05	ci right 6.567889e-05	k: 8	n:240000
CDKN2A   240000 perm   68 sec   (3513 perm/sec)   p_kst 3.333333e-05   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 1.306641e+00	ci left: 1.381543e-05	ci right 6.305178e-05	k: 8	n:250000
CDKN2A   250000 perm   72 sec   (3471 perm/sec)   p_kst 3.200000e-05   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 1.306642e+00	ci left: 1.328406e-05	ci right 6.062675e-05	k: 8	n:260000
CDKN2A   260000 perm   76 sec   (3429 perm/sec)   p_kst 3.076923e-05   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 1.306642e+00	ci left: 1.279206e-05	ci right 5.838134e-05	k: 8	n:270000
CDKN2A   270000 perm   80 sec   (3388 perm/sec)   p_kst 2.962963e-05   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 1.306643e+00	ci left: 1.233519e-05	ci right 5.629632e-05	k: 8	n:280000
CDKN2A   280000 perm   84 sec   (3349 perm/sec)   p_kst 2.857143e-05   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 1.239589e+00	ci left: 1.419104e-05	ci right 5.891229e-05	k: 9	n:290000
CDKN2A   290000 perm   88 sec   (3311 perm/sec)   p_kst 3.103448e-05   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 1.239590e+00	ci left: 1.371800e-05	ci right 5.694858e-05	k: 9	n:300000
CDKN2A   300000 perm   92 sec   (3273 perm/sec)   p_kst 3.000000e-05   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 1.239591e+00	ci left: 1.327548e-05	ci right 5.511155e-05	k: 9	n:310000
CDKN2A   310000 perm   96 sec   (3237 perm/sec)   p_kst 2.903226e-05   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 1.239592e+00	ci left: 1.286062e-05	ci right 5.338934e-05	k: 9	n:320000
CDKN2A   320000 perm   100 sec   (3200 perm/sec)   p_kst 2.812500e-05   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 1.239592e+00	ci left: 1.247090e-05	ci right 5.177150e-05	k: 9	n:330000
CDKN2A   330000 perm   104 sec   (3166 perm/sec)   p_kst 2.727273e-05   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 1.239593e+00	ci left: 1.210411e-05	ci right 5.024882e-05	k: 9	n:340000
CDKN2A   340000 perm   109 sec   (3133 perm/sec)   p_kst 2.647059e-05   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 1.239593e+00	ci left: 1.175827e-05	ci right 4.881316e-05	k: 9	n:350000
CDKN2A   350000 perm   113 sec   (3101 perm/sec)   p_kst 2.571429e-05   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 1.239594e+00	ci left: 1.143165e-05	ci right 4.745725e-05	k: 9	n:360000
CDKN2A   360000 perm   117 sec   (3069 perm/sec)   p_kst 2.500000e-05   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 1.239594e+00	ci left: 1.112269e-05	ci right 4.617464e-05	k: 9	n:370000
CDKN2A   370000 perm   122 sec   (3037 perm/sec)   p_kst 2.432432e-05   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 1.181906e+00	ci left: 1.261951e-05	ci right 4.839514e-05	k: 10	n:380000
CDKN2A   380000 perm   126 sec   (3005 perm/sec)   p_kst 2.631579e-05   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 1.181906e+00	ci left: 1.229593e-05	ci right 4.715425e-05	k: 10	n:390000
CDKN2A   390000 perm   131 sec   (2968 perm/sec)   p_kst 2.564103e-05   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 1.181907e+00	ci left: 1.198853e-05	ci right 4.597541e-05	k: 10	n:400000
CDKN2A   400000 perm   136 sec   (2935 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 1.181907e+00	ci left: 1.169613e-05	ci right 4.485407e-05	k: 10	n:410000
CDKN2A   410000 perm   141 sec   (2905 perm/sec)   p_kst 2.439024e-05   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 1.181908e+00	ci left: 1.141765e-05	ci right 4.378612e-05	k: 10	n:420000
CDKN2A   420000 perm   146 sec   (2875 perm/sec)   p_kst 2.380952e-05   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 1.181908e+00	ci left: 1.115212e-05	ci right 4.276785e-05	k: 10	n:430000
CDKN2A   430000 perm   151 sec   (2846 perm/sec)   p_kst 2.325581e-05   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 1.181908e+00	ci left: 1.089866e-05	ci right 4.179587e-05	k: 10	n:440000
CDKN2A   440000 perm   156 sec   (2817 perm/sec)   p_kst 2.272727e-05   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 1.181909e+00	ci left: 1.065647e-05	ci right 4.086708e-05	k: 10	n:450000
CDKN2A   450000 perm   161 sec   (2787 perm/sec)   p_kst 2.222222e-05   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
CDKN2A   460000 perm   167 sec   (2759 perm/sec)   p_kst 2.173913e-05   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 1.181909e+00	ci left: 1.020300e-05	ci right 3.912807e-05	k: 10	n:470000
CDKN2A   470000 perm   172 sec   (2732 perm/sec)   p_kst 2.127660e-05   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 1.181910e+00	ci left: 9.990437e-06	ci right 3.831291e-05	k: 10	n:480000
CDKN2A   480000 perm   177 sec   (2705 perm/sec)   p_kst 2.083333e-05   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 1.181910e+00	ci left: 9.786550e-06	ci right 3.753102e-05	k: 10	n:490000
CDKN2A   490000 perm   183 sec   (2679 perm/sec)   p_kst 2.040816e-05   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 1.181910e+00	ci left: 9.590818e-06	ci right 3.678040e-05	k: 10	n:500000
CDKN2A   500000 perm   188 sec   (2655 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 1.181911e+00	ci left: 9.402762e-06	ci right 3.605923e-05	k: 10	n:510000
CDKN2A   510000 perm   194 sec   (2630 perm/sec)   p_kst 1.960784e-05   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 1.181911e+00	ci left: 9.221939e-06	ci right 3.536578e-05	k: 10	n:520000
CDKN2A   520000 perm   200 sec   (2606 perm/sec)   p_kst 1.923077e-05   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 1.181911e+00	ci left: 9.047939e-06	ci right 3.469851e-05	k: 10	n:530000
CDKN2A   530000 perm   205 sec   (2582 perm/sec)   p_kst 1.886792e-05   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 1.181911e+00	ci left: 8.880384e-06	ci right 3.405595e-05	k: 10	n:540000
CDKN2A   540000 perm   211 sec   (2559 perm/sec)   p_kst 1.851852e-05   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 1.181912e+00	ci left: 8.718922e-06	ci right 3.343676e-05	k: 10	n:550000
CDKN2A   550000 perm   217 sec   (2536 perm/sec)   p_kst 1.818182e-05   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 1.181912e+00	ci left: 8.563226e-06	ci right 3.283968e-05	k: 10	n:560000
CDKN2A   560000 perm   223 sec   (2514 perm/sec)   p_kst 1.785714e-05   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 1.131594e+00	ci left: 9.633653e-06	ci right 3.452963e-05	k: 11	n:570000
CDKN2A   570000 perm   229 sec   (2492 perm/sec)   p_kst 1.929825e-05   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 1.131594e+00	ci left: 9.467555e-06	ci right 3.393430e-05	k: 11	n:580000
CDKN2A   580000 perm   235 sec   (2471 perm/sec)   p_kst 1.896552e-05   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 1.131594e+00	ci left: 9.307087e-06	ci right 3.335914e-05	k: 11	n:590000
CDKN2A   590000 perm   241 sec   (2450 perm/sec)   p_kst 1.864407e-05   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 1.131594e+00	ci left: 9.151968e-06	ci right 3.280316e-05	k: 11	n:600000
CDKN2A   600000 perm   247 sec   (2427 perm/sec)   p_kst 1.833333e-05   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 1.131594e+00	ci left: 9.001936e-06	ci right 3.226541e-05	k: 11	n:610000
CDKN2A   610000 perm   253 sec   (2407 perm/sec)   p_kst 1.803279e-05   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 1.131595e+00	ci left: 8.856742e-06	ci right 3.174500e-05	k: 11	n:620000
CDKN2A   620000 perm   260 sec   (2387 perm/sec)   p_kst 1.774194e-05   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
CDKN2A   630000 perm   266 sec   (2367 perm/sec)   p_kst 1.746032e-05   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
CDKN2A   640000 perm   273 sec   (2348 perm/sec)   p_kst 1.718750e-05   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
CDKN2A   650000 perm   279 sec   (2328 perm/sec)   p_kst 1.692308e-05   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
CDKN2A   660000 perm   286 sec   (2309 perm/sec)   p_kst 1.666667e-05   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
CDKN2A   670000 perm   293 sec   (2290 perm/sec)   p_kst 1.641791e-05   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 1.131596e+00	ci left: 8.075263e-06	ci right 2.894399e-05	k: 11	n:680000
CDKN2A   680000 perm   299 sec   (2272 perm/sec)   p_kst 1.617647e-05   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 1.131596e+00	ci left: 7.958229e-06	ci right 2.852451e-05	k: 11	n:690000
CDKN2A   690000 perm   306 sec   (2254 perm/sec)   p_kst 1.594203e-05   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 1.131596e+00	ci left: 7.844540e-06	ci right 2.811702e-05	k: 11	n:700000
CDKN2A   700000 perm   313 sec   (2237 perm/sec)   p_kst 1.571429e-05   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 1.131596e+00	ci left: 7.734053e-06	ci right 2.772101e-05	k: 11	n:710000
CDKN2A   710000 perm   320 sec   (2220 perm/sec)   p_kst 1.549296e-05   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 1.131596e+00	ci left: 7.626636e-06	ci right 2.733600e-05	k: 11	n:720000
CDKN2A   720000 perm   327 sec   (2203 perm/sec)   p_kst 1.527778e-05   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 1.131596e+00	ci left: 7.522161e-06	ci right 2.696154e-05	k: 11	n:730000
CDKN2A   730000 perm   334 sec   (2186 perm/sec)   p_kst 1.506849e-05   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 1.131597e+00	ci left: 7.420510e-06	ci right 2.659719e-05	k: 11	n:740000
CDKN2A   740000 perm   341 sec   (2170 perm/sec)   p_kst 1.486486e-05   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 1.131597e+00	ci left: 7.321569e-06	ci right 2.624257e-05	k: 11	n:750000
CDKN2A   750000 perm   348 sec   (2154 perm/sec)   p_kst 1.466667e-05   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 1.047654e+00	ci left: 9.107863e-06	ci right 2.925034e-05	k: 13	n:760000
CDKN2A   760000 perm   355 sec   (2139 perm/sec)   p_kst 1.710526e-05   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 1.047654e+00	ci left: 8.989578e-06	ci right 2.887047e-05	k: 13	n:770000
CDKN2A   770000 perm   363 sec   (2123 perm/sec)   p_kst 1.688312e-05   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 1.047654e+00	ci left: 8.874327e-06	ci right 2.850034e-05	k: 13	n:780000
CDKN2A   780000 perm   370 sec   (2107 perm/sec)   p_kst 1.666667e-05   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 1.047654e+00	ci left: 8.761993e-06	ci right 2.813958e-05	k: 13	n:790000
CDKN2A   790000 perm   378 sec   (2092 perm/sec)   p_kst 1.645570e-05   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 1.012130e+00	ci left: 9.567445e-06	ci right 2.936185e-05	k: 14	n:800000
CDKN2A   800000 perm   385 sec   (2077 perm/sec)   p_kst 1.750000e-05   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 1.012130e+00	ci left: 9.449328e-06	ci right 2.899936e-05	k: 14	n:810000
CDKN2A   810000 perm   393 sec   (2061 perm/sec)   p_kst 1.728395e-05   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 9.507292e-01	ci left: 1.115295e-05	ci right 3.168639e-05	k: 16	n:820000
CDKN2A   820000 perm   401 sec   (2047 perm/sec)   p_kst 1.951220e-05   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 9.507293e-01	ci left: 1.101857e-05	ci right 3.130463e-05	k: 16	n:830000
CDKN2A   830000 perm   408 sec   (2032 perm/sec)   p_kst 1.927711e-05   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 9.507295e-01	ci left: 1.088740e-05	ci right 3.093196e-05	k: 16	n:840000
CDKN2A   840000 perm   416 sec   (2018 perm/sec)   p_kst 1.904762e-05   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 9.507296e-01	ci left: 1.075931e-05	ci right 3.056805e-05	k: 16	n:850000
CDKN2A   850000 perm   424 sec   (2004 perm/sec)   p_kst 1.882353e-05   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 9.507297e-01	ci left: 1.063420e-05	ci right 3.021261e-05	k: 16	n:860000
CDKN2A   860000 perm   432 sec   (1989 perm/sec)   p_kst 1.860465e-05   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 9.507298e-01	ci left: 1.051197e-05	ci right 2.986534e-05	k: 16	n:870000
CDKN2A   870000 perm   440 sec   (1975 perm/sec)   p_kst 1.839080e-05   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 9.239429e-01	ci left: 1.125359e-05	ci right 3.093010e-05	k: 17	n:880000
CDKN2A   880000 perm   449 sec   (1961 perm/sec)   p_kst 1.931818e-05   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 9.239430e-01	ci left: 1.112715e-05	ci right 3.058257e-05	k: 17	n:890000
CDKN2A   890000 perm   457 sec   (1948 perm/sec)   p_kst 1.910112e-05   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 9.239431e-01	ci left: 1.100351e-05	ci right 3.024277e-05	k: 17	n:900000
CDKN2A   900000 perm   465 sec   (1934 perm/sec)   p_kst 1.888889e-05   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 8.992998e-01	ci left: 1.172305e-05	ci right 3.126110e-05	k: 18	n:910000
CDKN2A   910000 perm   474 sec   (1921 perm/sec)   p_kst 1.978022e-05   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 8.992999e-01	ci left: 1.159563e-05	ci right 3.092130e-05	k: 18	n:920000
CDKN2A   920000 perm   482 sec   (1908 perm/sec)   p_kst 1.956522e-05   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 8.993000e-01	ci left: 1.147094e-05	ci right 3.058882e-05	k: 18	n:930000
CDKN2A   930000 perm   491 sec   (1895 perm/sec)   p_kst 1.935484e-05   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 8.993001e-01	ci left: 1.134891e-05	ci right 3.026341e-05	k: 18	n:940000
CDKN2A   940000 perm   499 sec   (1883 perm/sec)   p_kst 1.914894e-05   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 8.993002e-01	ci left: 1.122945e-05	ci right 2.994485e-05	k: 18	n:950000
CDKN2A   950000 perm   508 sec   (1871 perm/sec)   p_kst 1.894737e-05   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 8.993003e-01	ci left: 1.111247e-05	ci right 2.963292e-05	k: 18	n:960000
CDKN2A   960000 perm   517 sec   (1858 perm/sec)   p_kst 1.875000e-05   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 8.993004e-01	ci left: 1.099791e-05	ci right 2.932743e-05	k: 18	n:970000
CDKN2A   970000 perm   525 sec   (1846 perm/sec)   p_kst 1.855670e-05   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 8.993005e-01	ci left: 1.088569e-05	ci right 2.902817e-05	k: 18	n:980000
CDKN2A   980000 perm   534 sec   (1834 perm/sec)   p_kst 1.836735e-05   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 8.993006e-01	ci left: 1.077573e-05	ci right 2.873496e-05	k: 18	n:990000
CDKN2A   990000 perm   543 sec   (1822 perm/sec)   p_kst 1.818182e-05   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 8.993007e-01	ci left: 1.066797e-05	ci right 2.844761e-05	k: 18	n:1000000
CDKN2A   1000000 perm   552 sec   (1811 perm/sec)   p_kst 1.800000e-05   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 8.993008e-01	ci left: 1.056235e-05	ci right 2.816595e-05	k: 18	n:1010000
CDKN2A   1010000 perm   561 sec   (1800 perm/sec)   p_kst 1.782178e-05   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 8.993009e-01	ci left: 1.045880e-05	ci right 2.788982e-05	k: 18	n:1020000
CDKN2A   1020000 perm   571 sec   (1788 perm/sec)   p_kst 1.764706e-05   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 8.993009e-01	ci left: 1.035726e-05	ci right 2.761904e-05	k: 18	n:1030000
CDKN2A   1030000 perm   580 sec   (1777 perm/sec)   p_kst 1.747573e-05   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 8.993010e-01	ci left: 1.025767e-05	ci right 2.735348e-05	k: 18	n:1040000
CDKN2A   1040000 perm   589 sec   (1766 perm/sec)   p_kst 1.730769e-05   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 8.993011e-01	ci left: 1.015997e-05	ci right 2.709297e-05	k: 18	n:1050000
CDKN2A   1050000 perm   598 sec   (1756 perm/sec)   p_kst 1.714286e-05   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 8.993012e-01	ci left: 1.006413e-05	ci right 2.683738e-05	k: 18	n:1060000
CDKN2A   1060000 perm   607 sec   (1746 perm/sec)   p_kst 1.698113e-05   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 8.993013e-01	ci left: 9.970068e-06	ci right 2.658656e-05	k: 18	n:1070000
CDKN2A   1070000 perm   617 sec   (1735 perm/sec)   p_kst 1.682243e-05   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 8.554054e-01	ci left: 1.131163e-05	ci right 2.860021e-05	k: 20	n:1080000
CDKN2A   1080000 perm   626 sec   (1725 perm/sec)   p_kst 1.851852e-05   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 8.554055e-01	ci left: 1.120785e-05	ci right 2.833782e-05	k: 20	n:1090000
CDKN2A   1090000 perm   636 sec   (1714 perm/sec)   p_kst 1.834862e-05   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 8.554056e-01	ci left: 1.110596e-05	ci right 2.808020e-05	k: 20	n:1100000
CDKN2A   1100000 perm   646 sec   (1703 perm/sec)   p_kst 1.818182e-05   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 8.554057e-01	ci left: 1.100591e-05	ci right 2.782723e-05	k: 20	n:1110000
CDKN2A   1110000 perm   657 sec   (1689 perm/sec)   p_kst 1.801802e-05   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 8.554057e-01	ci left: 1.090764e-05	ci right 2.757877e-05	k: 20	n:1120000
CDKN2A   1120000 perm   667 sec   (1679 perm/sec)   p_kst 1.785714e-05   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 8.554058e-01	ci left: 1.081111e-05	ci right 2.733472e-05	k: 20	n:1130000
CDKN2A   1130000 perm   677 sec   (1670 perm/sec)   p_kst 1.769912e-05   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 8.554059e-01	ci left: 1.071628e-05	ci right 2.709494e-05	k: 20	n:1140000
CDKN2A   1140000 perm   687 sec   (1660 perm/sec)   p_kst 1.754386e-05   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 8.554059e-01	ci left: 1.062309e-05	ci right 2.685933e-05	k: 20	n:1150000
CDKN2A   1150000 perm   696 sec   (1651 perm/sec)   p_kst 1.739130e-05   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 8.554060e-01	ci left: 1.053151e-05	ci right 2.662779e-05	k: 20	n:1160000
CDKN2A   1160000 perm   706 sec   (1642 perm/sec)   p_kst 1.724138e-05   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 8.554061e-01	ci left: 1.044150e-05	ci right 2.640020e-05	k: 20	n:1170000
CDKN2A   1170000 perm   717 sec   (1633 perm/sec)   p_kst 1.709402e-05   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 8.554062e-01	ci left: 1.035301e-05	ci right 2.617647e-05	k: 20	n:1180000
CDKN2A   1180000 perm   727 sec   (1623 perm/sec)   p_kst 1.694915e-05   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 8.554062e-01	ci left: 1.026601e-05	ci right 2.595650e-05	k: 20	n:1190000
CDKN2A   1190000 perm   737 sec   (1614 perm/sec)   p_kst 1.680672e-05   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 8.554063e-01	ci left: 1.018046e-05	ci right 2.574020e-05	k: 20	n:1200000
CDKN2A   1200000 perm   747 sec   (1606 perm/sec)   p_kst 1.666667e-05   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 8.554064e-01	ci left: 1.009633e-05	ci right 2.552747e-05	k: 20	n:1210000
CDKN2A   1210000 perm   758 sec   (1597 perm/sec)   p_kst 1.652893e-05   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 8.554064e-01	ci left: 1.001357e-05	ci right 2.531823e-05	k: 20	n:1220000
CDKN2A   1220000 perm   768 sec   (1588 perm/sec)   p_kst 1.639344e-05   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 8.554065e-01	ci left: 9.932157e-06	ci right 2.511239e-05	k: 20	n:1230000
CDKN2A   1230000 perm   779 sec   (1580 perm/sec)   p_kst 1.626016e-05   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 8.554065e-01	ci left: 9.852059e-06	ci right 2.490987e-05	k: 20	n:1240000
CDKN2A   1240000 perm   789 sec   (1571 perm/sec)   p_kst 1.612903e-05   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 8.554066e-01	ci left: 9.773242e-06	ci right 2.471059e-05	k: 20	n:1250000
CDKN2A   1250000 perm   800 sec   (1563 perm/sec)   p_kst 1.600000e-05   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 8.554067e-01	ci left: 9.695677e-06	ci right 2.451448e-05	k: 20	n:1260000
CDKN2A   1260000 perm   811 sec   (1554 perm/sec)   p_kst 1.587302e-05   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 8.554067e-01	ci left: 9.619332e-06	ci right 2.432145e-05	k: 20	n:1270000
CDKN2A   1270000 perm   822 sec   (1546 perm/sec)   p_kst 1.574803e-05   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 8.554068e-01	ci left: 9.544181e-06	ci right 2.413144e-05	k: 20	n:1280000
CDKN2A   1280000 perm   832 sec   (1538 perm/sec)   p_kst 1.562500e-05   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 8.554068e-01	ci left: 9.470195e-06	ci right 2.394438e-05	k: 20	n:1290000
CDKN2A   1290000 perm   843 sec   (1529 perm/sec)   p_kst 1.550388e-05   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 8.554069e-01	ci left: 9.397347e-06	ci right 2.376019e-05	k: 20	n:1300000
CDKN2A   1300000 perm   855 sec   (1521 perm/sec)   p_kst 1.538462e-05   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 8.554069e-01	ci left: 9.325612e-06	ci right 2.357882e-05	k: 20	n:1310000
CDKN2A   1310000 perm   866 sec   (1513 perm/sec)   p_kst 1.526718e-05   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 8.554070e-01	ci left: 9.254963e-06	ci right 2.340019e-05	k: 20	n:1320000
CDKN2A   1320000 perm   877 sec   (1506 perm/sec)   p_kst 1.515152e-05   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 8.357396e-01	ci left: 9.773959e-06	ci right 2.413579e-05	k: 21	n:1330000
CDKN2A   1330000 perm   888 sec   (1497 perm/sec)   p_kst 1.578947e-05   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 8.357396e-01	ci left: 9.701019e-06	ci right 2.395567e-05	k: 21	n:1340000
CDKN2A   1340000 perm   899 sec   (1490 perm/sec)   p_kst 1.567164e-05   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 8.173692e-01	ci left: 1.021283e-05	ci right 2.467269e-05	k: 22	n:1350000
CDKN2A   1350000 perm   911 sec   (1482 perm/sec)   p_kst 1.629630e-05   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 8.001593e-01	ci left: 1.072064e-05	ci right 2.537584e-05	k: 23	n:1360000
CDKN2A   1360000 perm   922 sec   (1474 perm/sec)   p_kst 1.691176e-05   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 8.001593e-01	ci left: 1.064238e-05	ci right 2.519062e-05	k: 23	n:1370000
CDKN2A   1370000 perm   934 sec   (1467 perm/sec)   p_kst 1.678832e-05   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 8.001594e-01	ci left: 1.056527e-05	ci right 2.500808e-05	k: 23	n:1380000
CDKN2A   1380000 perm   946 sec   (1459 perm/sec)   p_kst 1.666667e-05   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 8.001595e-01	ci left: 1.048926e-05	ci right 2.482817e-05	k: 23	n:1390000
CDKN2A   1390000 perm   957 sec   (1452 perm/sec)   p_kst 1.654676e-05   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 8.001595e-01	ci left: 1.041433e-05	ci right 2.465082e-05	k: 23	n:1400000
CDKN2A   1400000 perm   969 sec   (1444 perm/sec)   p_kst 1.642857e-05   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 8.001596e-01	ci left: 1.034047e-05	ci right 2.447599e-05	k: 23	n:1410000
CDKN2A   1410000 perm   981 sec   (1437 perm/sec)   p_kst 1.631206e-05   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 8.001596e-01	ci left: 1.026765e-05	ci right 2.430363e-05	k: 23	n:1420000
CDKN2A   1420000 perm   993 sec   (1430 perm/sec)   p_kst 1.619718e-05   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 8.001597e-01	ci left: 1.019585e-05	ci right 2.413367e-05	k: 23	n:1430000
CDKN2A   1430000 perm   1005 sec   (1423 perm/sec)   p_kst 1.608392e-05   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 8.001597e-01	ci left: 1.012504e-05	ci right 2.396608e-05	k: 23	n:1440000
CDKN2A   1440000 perm   1017 sec   (1416 perm/sec)   p_kst 1.597222e-05   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 8.001598e-01	ci left: 1.005522e-05	ci right 2.380080e-05	k: 23	n:1450000
CDKN2A   1450000 perm   1029 sec   (1409 perm/sec)   p_kst 1.586207e-05   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 8.001598e-01	ci left: 9.986345e-06	ci right 2.363778e-05	k: 23	n:1460000
CDKN2A   1460000 perm   1041 sec   (1403 perm/sec)   p_kst 1.575342e-05   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 8.001598e-01	ci left: 9.918411e-06	ci right 2.347698e-05	k: 23	n:1470000
CDKN2A   1470000 perm   1053 sec   (1396 perm/sec)   p_kst 1.564626e-05   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 8.001599e-01	ci left: 9.851394e-06	ci right 2.331835e-05	k: 23	n:1480000
CDKN2A   1480000 perm   1065 sec   (1389 perm/sec)   p_kst 1.554054e-05   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 8.001599e-01	ci left: 9.785277e-06	ci right 2.316185e-05	k: 23	n:1490000
CDKN2A   1490000 perm   1077 sec   (1383 perm/sec)   p_kst 1.543624e-05   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 8.001600e-01	ci left: 9.720042e-06	ci right 2.300744e-05	k: 23	n:1500000
CDKN2A   1500000 perm   1090 sec   (1376 perm/sec)   p_kst 1.533333e-05   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 8.001600e-01	ci left: 9.655671e-06	ci right 2.285507e-05	k: 23	n:1510000
CDKN2A   1510000 perm   1102 sec   (1370 perm/sec)   p_kst 1.523179e-05   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 7.839933e-01	ci left: 1.011664e-05	ci right 2.349339e-05	k: 24	n:1520000
CDKN2A   1520000 perm   1115 sec   (1363 perm/sec)   p_kst 1.578947e-05   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 7.839933e-01	ci left: 1.005052e-05	ci right 2.333984e-05	k: 24	n:1530000
CDKN2A   1530000 perm   1127 sec   (1357 perm/sec)   p_kst 1.568627e-05   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 7.839934e-01	ci left: 9.985254e-06	ci right 2.318829e-05	k: 24	n:1540000
CDKN2A   1540000 perm   1140 sec   (1351 perm/sec)   p_kst 1.558442e-05   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 7.839934e-01	ci left: 9.920833e-06	ci right 2.303869e-05	k: 24	n:1550000
CDKN2A   1550000 perm   1153 sec   (1345 perm/sec)   p_kst 1.548387e-05   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 7.839935e-01	ci left: 9.857237e-06	ci right 2.289100e-05	k: 24	n:1560000
CDKN2A   1560000 perm   1166 sec   (1338 perm/sec)   p_kst 1.538462e-05   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 7.839935e-01	ci left: 9.794452e-06	ci right 2.274520e-05	k: 24	n:1570000
CDKN2A   1570000 perm   1178 sec   (1332 perm/sec)   p_kst 1.528662e-05   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 7.687687e-01	ci left: 1.023970e-05	ci right 2.335746e-05	k: 25	n:1580000
CDKN2A   1580000 perm   1191 sec   (1326 perm/sec)   p_kst 1.582278e-05   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 7.687687e-01	ci left: 1.017530e-05	ci right 2.321056e-05	k: 25	n:1590000
CDKN2A   1590000 perm   1205 sec   (1320 perm/sec)   p_kst 1.572327e-05   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 7.687688e-01	ci left: 1.011170e-05	ci right 2.306550e-05	k: 25	n:1600000
CDKN2A   1600000 perm   1218 sec   (1313 perm/sec)   p_kst 1.562500e-05   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 7.687688e-01	ci left: 1.004890e-05	ci right 2.292223e-05	k: 25	n:1610000
CDKN2A   1610000 perm   1232 sec   (1307 perm/sec)   p_kst 1.552795e-05   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 7.687688e-01	ci left: 9.986865e-06	ci right 2.278074e-05	k: 25	n:1620000
CDKN2A   1620000 perm   1245 sec   (1301 perm/sec)   p_kst 1.543210e-05   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 7.687689e-01	ci left: 9.925595e-06	ci right 2.264098e-05	k: 25	n:1630000
CDKN2A   1630000 perm   1258 sec   (1295 perm/sec)   p_kst 1.533742e-05   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 7.687689e-01	ci left: 9.865073e-06	ci right 2.250293e-05	k: 25	n:1640000
CDKN2A   1640000 perm   1272 sec   (1289 perm/sec)   p_kst 1.524390e-05   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 7.687690e-01	ci left: 9.805285e-06	ci right 2.236654e-05	k: 25	n:1650000
CDKN2A   1650000 perm   1285 sec   (1284 perm/sec)   p_kst 1.515152e-05   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 7.687690e-01	ci left: 9.746217e-06	ci right 2.223181e-05	k: 25	n:1660000
CDKN2A   1660000 perm   1299 sec   (1278 perm/sec)   p_kst 1.506024e-05   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 7.687690e-01	ci left: 9.687856e-06	ci right 2.209868e-05	k: 25	n:1670000
CDKN2A   1670000 perm   1313 sec   (1272 perm/sec)   p_kst 1.497006e-05   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 7.687691e-01	ci left: 9.630190e-06	ci right 2.196714e-05	k: 25	n:1680000
CDKN2A   1680000 perm   1326 sec   (1267 perm/sec)   p_kst 1.488095e-05   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 7.687691e-01	ci left: 9.573207e-06	ci right 2.183716e-05	k: 25	n:1690000
CDKN2A   1690000 perm   1340 sec   (1261 perm/sec)   p_kst 1.479290e-05   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 7.687691e-01	ci left: 9.516894e-06	ci right 2.170871e-05	k: 25	n:1700000
CDKN2A   1700000 perm   1354 sec   (1256 perm/sec)   p_kst 1.470588e-05   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 7.543982e-01	ci left: 9.932224e-06	ci right 2.227830e-05	k: 26	n:1710000
CDKN2A   1710000 perm   1368 sec   (1250 perm/sec)   p_kst 1.520468e-05   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 7.543982e-01	ci left: 9.874478e-06	ci right 2.214877e-05	k: 26	n:1720000
CDKN2A   1720000 perm   1381 sec   (1245 perm/sec)   p_kst 1.511628e-05   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 7.543982e-01	ci left: 9.817400e-06	ci right 2.202075e-05	k: 26	n:1730000
CDKN2A   1730000 perm   1396 sec   (1239 perm/sec)   p_kst 1.502890e-05   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 7.543983e-01	ci left: 9.760978e-06	ci right 2.189419e-05	k: 26	n:1740000
CDKN2A   1740000 perm   1410 sec   (1234 perm/sec)   p_kst 1.494253e-05   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 7.543983e-01	ci left: 9.705201e-06	ci right 2.176908e-05	k: 26	n:1750000
CDKN2A   1750000 perm   1424 sec   (1229 perm/sec)   p_kst 1.485714e-05   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 7.543984e-01	ci left: 9.650058e-06	ci right 2.164539e-05	k: 26	n:1760000
CDKN2A   1760000 perm   1439 sec   (1223 perm/sec)   p_kst 1.477273e-05   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 7.543984e-01	ci left: 9.595538e-06	ci right 2.152310e-05	k: 26	n:1770000
CDKN2A   1770000 perm   1453 sec   (1218 perm/sec)   p_kst 1.468927e-05   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 7.543984e-01	ci left: 9.541630e-06	ci right 2.140219e-05	k: 26	n:1780000
CDKN2A   1780000 perm   1468 sec   (1213 perm/sec)   p_kst 1.460674e-05   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 7.543985e-01	ci left: 9.488325e-06	ci right 2.128262e-05	k: 26	n:1790000
CDKN2A   1790000 perm   1482 sec   (1208 perm/sec)   p_kst 1.452514e-05   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 7.543985e-01	ci left: 9.435612e-06	ci right 2.116439e-05	k: 26	n:1800000
CDKN2A   1800000 perm   1497 sec   (1203 perm/sec)   p_kst 1.444444e-05   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 7.543985e-01	ci left: 9.383481e-06	ci right 2.104746e-05	k: 26	n:1810000
CDKN2A   1810000 perm   1512 sec   (1197 perm/sec)   p_kst 1.436464e-05   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 7.408045e-01	ci left: 9.776489e-06	ci right 2.158431e-05	k: 27	n:1820000
CDKN2A   1820000 perm   1526 sec   (1193 perm/sec)   p_kst 1.483516e-05   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 7.408045e-01	ci left: 9.723066e-06	ci right 2.146637e-05	k: 27	n:1830000
CDKN2A   1830000 perm   1541 sec   (1188 perm/sec)   p_kst 1.475410e-05   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 7.408045e-01	ci left: 9.670223e-06	ci right 2.134970e-05	k: 27	n:1840000
CDKN2A   1840000 perm   1556 sec   (1183 perm/sec)   p_kst 1.467391e-05   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 7.279198e-01	ci left: 1.005721e-05	ci right 2.187441e-05	k: 28	n:1850000
CDKN2A   1850000 perm   1571 sec   (1178 perm/sec)   p_kst 1.513514e-05   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 7.279199e-01	ci left: 1.000314e-05	ci right 2.175681e-05	k: 28	n:1860000
CDKN2A   1860000 perm   1586 sec   (1173 perm/sec)   p_kst 1.505376e-05   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 7.279199e-01	ci left: 9.949646e-06	ci right 2.164046e-05	k: 28	n:1870000
CDKN2A   1870000 perm   1600 sec   (1168 perm/sec)   p_kst 1.497326e-05   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 7.279199e-01	ci left: 9.896722e-06	ci right 2.152535e-05	k: 28	n:1880000
CDKN2A   1880000 perm   1616 sec   (1164 perm/sec)   p_kst 1.489362e-05   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 7.279199e-01	ci left: 9.844359e-06	ci right 2.141146e-05	k: 28	n:1890000
CDKN2A   1890000 perm   1631 sec   (1159 perm/sec)   p_kst 1.481481e-05   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 7.279200e-01	ci left: 9.792546e-06	ci right 2.129877e-05	k: 28	n:1900000
CDKN2A   1900000 perm   1647 sec   (1154 perm/sec)   p_kst 1.473684e-05   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 7.156850e-01	ci left: 1.016848e-05	ci right 2.180560e-05	k: 29	n:1910000
CDKN2A   1910000 perm   1662 sec   (1149 perm/sec)   p_kst 1.518325e-05   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 7.156850e-01	ci left: 1.011552e-05	ci right 2.169203e-05	k: 29	n:1920000
CDKN2A   1920000 perm   1677 sec   (1145 perm/sec)   p_kst 1.510417e-05   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 7.156851e-01	ci left: 1.006311e-05	ci right 2.157964e-05	k: 29	n:1930000
CDKN2A   1930000 perm   1692 sec   (1140 perm/sec)   p_kst 1.502591e-05   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 7.156851e-01	ci left: 1.001124e-05	ci right 2.146840e-05	k: 29	n:1940000
CDKN2A   1940000 perm   1708 sec   (1136 perm/sec)   p_kst 1.494845e-05   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 7.156851e-01	ci left: 9.959896e-06	ci right 2.135831e-05	k: 29	n:1950000
CDKN2A   1950000 perm   1723 sec   (1131 perm/sec)   p_kst 1.487179e-05   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 7.156851e-01	ci left: 9.909080e-06	ci right 2.124934e-05	k: 29	n:1960000
CDKN2A   1960000 perm   1739 sec   (1127 perm/sec)   p_kst 1.479592e-05   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 7.156852e-01	ci left: 9.858780e-06	ci right 2.114147e-05	k: 29	n:1970000
CDKN2A   1970000 perm   1755 sec   (1122 perm/sec)   p_kst 1.472081e-05   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 7.156852e-01	ci left: 9.808988e-06	ci right 2.103470e-05	k: 29	n:1980000
CDKN2A   1980000 perm   1771 sec   (1118 perm/sec)   p_kst 1.464646e-05   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 7.156852e-01	ci left: 9.759697e-06	ci right 2.092900e-05	k: 29	n:1990000
CDKN2A   1990000 perm   1787 sec   (1113 perm/sec)   p_kst 1.457286e-05   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 7.156853e-01	ci left: 9.710898e-06	ci right 2.082435e-05	k: 29	n:2000000
CDKN2A   2000000 perm   1803 sec   (1109 perm/sec)   p_kst 1.450000e-05   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 7.156853e-01	ci left: 9.662585e-06	ci right 2.072075e-05	k: 29	n:2010000
CDKN2A   2010000 perm   1819 sec   (1105 perm/sec)   p_kst 1.442786e-05   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 7.156853e-01	ci left: 9.614751e-06	ci right 2.061817e-05	k: 29	n:2020000
CDKN2A   2020000 perm   1835 sec   (1101 perm/sec)   p_kst 1.435644e-05   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 7.040472e-01	ci left: 9.970895e-06	ci right 2.109691e-05	k: 30	n:2030000
CDKN2A   2030000 perm   1851 sec   (1097 perm/sec)   p_kst 1.477833e-05   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 7.040473e-01	ci left: 9.922018e-06	ci right 2.099350e-05	k: 30	n:2040000
CDKN2A   2040000 perm   1868 sec   (1092 perm/sec)   p_kst 1.470588e-05   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 7.040473e-01	ci left: 9.873618e-06	ci right 2.089109e-05	k: 30	n:2050000
CDKN2A   2050000 perm   1884 sec   (1088 perm/sec)   p_kst 1.463415e-05   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 7.040473e-01	ci left: 9.825688e-06	ci right 2.078968e-05	k: 30	n:2060000
CDKN2A   2060000 perm   1900 sec   (1084 perm/sec)   p_kst 1.456311e-05   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 7.040473e-01	ci left: 9.778221e-06	ci right 2.068924e-05	k: 30	n:2070000
CDKN2A   2070000 perm   1917 sec   (1080 perm/sec)   p_kst 1.449275e-05   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 7.040474e-01	ci left: 9.731210e-06	ci right 2.058978e-05	k: 30	n:2080000
CDKN2A   2080000 perm   1933 sec   (1076 perm/sec)   p_kst 1.442308e-05   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 7.040474e-01	ci left: 9.684649e-06	ci right 2.049126e-05	k: 30	n:2090000
CDKN2A   2090000 perm   1950 sec   (1072 perm/sec)   p_kst 1.435407e-05   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 7.040474e-01	ci left: 9.638532e-06	ci right 2.039368e-05	k: 30	n:2100000
CDKN2A   2100000 perm   1967 sec   (1068 perm/sec)   p_kst 1.428571e-05   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 6.929592e-01	ci left: 9.982484e-06	ci right 2.085398e-05	k: 31	n:2110000
CDKN2A   2110000 perm   1983 sec   (1064 perm/sec)   p_kst 1.469194e-05   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 6.823789e-01	ci left: 1.032454e-05	ci right 2.130864e-05	k: 32	n:2120000
CDKN2A   2120000 perm   2000 sec   (1060 perm/sec)   p_kst 1.509434e-05   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 6.823790e-01	ci left: 1.027607e-05	ci right 2.120860e-05	k: 32	n:2130000
CDKN2A   2130000 perm   2017 sec   (1056 perm/sec)   p_kst 1.502347e-05   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 6.823790e-01	ci left: 1.022805e-05	ci right 2.110949e-05	k: 32	n:2140000
CDKN2A   2140000 perm   2035 sec   (1052 perm/sec)   p_kst 1.495327e-05   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 6.722690e-01	ci left: 1.056546e-05	ci right 2.155541e-05	k: 33	n:2150000
CDKN2A   2150000 perm   2052 sec   (1048 perm/sec)   p_kst 1.534884e-05   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 6.722690e-01	ci left: 1.051654e-05	ci right 2.145561e-05	k: 33	n:2160000
CDKN2A   2160000 perm   2069 sec   (1044 perm/sec)   p_kst 1.527778e-05   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 6.722690e-01	ci left: 1.046808e-05	ci right 2.135674e-05	k: 33	n:2170000
CDKN2A   2170000 perm   2086 sec   (1040 perm/sec)   p_kst 1.520737e-05   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 6.722691e-01	ci left: 1.042006e-05	ci right 2.125877e-05	k: 33	n:2180000
CDKN2A   2180000 perm   2103 sec   (1037 perm/sec)   p_kst 1.513761e-05   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 6.625955e-01	ci left: 1.075162e-05	ci right 2.169472e-05	k: 34	n:2190000
CDKN2A   2190000 perm   2121 sec   (1033 perm/sec)   p_kst 1.552511e-05   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 6.625955e-01	ci left: 1.070274e-05	ci right 2.159611e-05	k: 34	n:2200000
CDKN2A   2200000 perm   2138 sec   (1029 perm/sec)   p_kst 1.545455e-05   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 6.625955e-01	ci left: 1.065432e-05	ci right 2.149839e-05	k: 34	n:2210000
CDKN2A   2210000 perm   2156 sec   (1025 perm/sec)   p_kst 1.538462e-05   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 6.625956e-01	ci left: 1.060632e-05	ci right 2.140155e-05	k: 34	n:2220000
CDKN2A   2220000 perm   2173 sec   (1022 perm/sec)   p_kst 1.531532e-05   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 6.625956e-01	ci left: 1.055876e-05	ci right 2.130558e-05	k: 34	n:2230000
CDKN2A   2230000 perm   2191 sec   (1018 perm/sec)   p_kst 1.524664e-05   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 6.533279e-01	ci left: 1.088341e-05	ci right 2.173053e-05	k: 35	n:2240000
CDKN2A   2240000 perm   2208 sec   (1014 perm/sec)   p_kst 1.562500e-05   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 6.533280e-01	ci left: 1.083504e-05	ci right 2.163395e-05	k: 35	n:2250000
CDKN2A   2250000 perm   2227 sec   (1011 perm/sec)   p_kst 1.555556e-05   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 6.533280e-01	ci left: 1.078709e-05	ci right 2.153822e-05	k: 35	n:2260000
CDKN2A   2260000 perm   2245 sec   (1007 perm/sec)   p_kst 1.548673e-05   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 6.533280e-01	ci left: 1.073957e-05	ci right 2.144334e-05	k: 35	n:2270000
CDKN2A   2270000 perm   2262 sec   (1003 perm/sec)   p_kst 1.541850e-05   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 6.533280e-01	ci left: 1.069247e-05	ci right 2.134929e-05	k: 35	n:2280000
CDKN2A   2280000 perm   2281 sec   (1000 perm/sec)   p_kst 1.535088e-05   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 6.533281e-01	ci left: 1.064578e-05	ci right 2.125606e-05	k: 35	n:2290000
CDKN2A   2290000 perm   2299 sec   (996 perm/sec)   p_kst 1.528384e-05   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 6.533281e-01	ci left: 1.059949e-05	ci right 2.116364e-05	k: 35	n:2300000
CDKN2A   2300000 perm   2316 sec   (993 perm/sec)   p_kst 1.521739e-05   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 6.533281e-01	ci left: 1.055361e-05	ci right 2.107203e-05	k: 35	n:2310000
CDKN2A   2310000 perm   2334 sec   (990 perm/sec)   p_kst 1.515152e-05   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 6.533281e-01	ci left: 1.050812e-05	ci right 2.098120e-05	k: 35	n:2320000
CDKN2A   2320000 perm   2353 sec   (986 perm/sec)   p_kst 1.508621e-05   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 6.533281e-01	ci left: 1.046302e-05	ci right 2.089115e-05	k: 35	n:2330000
CDKN2A   2330000 perm   2371 sec   (983 perm/sec)   p_kst 1.502146e-05   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 6.533282e-01	ci left: 1.041830e-05	ci right 2.080187e-05	k: 35	n:2340000
CDKN2A   2340000 perm   2389 sec   (980 perm/sec)   p_kst 1.495726e-05   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 6.533282e-01	ci left: 1.037397e-05	ci right 2.071336e-05	k: 35	n:2350000
CDKN2A   2350000 perm   2407 sec   (976 perm/sec)   p_kst 1.489362e-05   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 6.444388e-01	ci left: 1.068390e-05	ci right 2.111823e-05	k: 36	n:2360000
CDKN2A   2360000 perm   2426 sec   (973 perm/sec)   p_kst 1.525424e-05   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 6.444389e-01	ci left: 1.063882e-05	ci right 2.102913e-05	k: 36	n:2370000
CDKN2A   2370000 perm   2445 sec   (969 perm/sec)   p_kst 1.518987e-05   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 6.444389e-01	ci left: 1.059412e-05	ci right 2.094077e-05	k: 36	n:2380000
CDKN2A   2380000 perm   2463 sec   (966 perm/sec)   p_kst 1.512605e-05   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 6.444389e-01	ci left: 1.054979e-05	ci right 2.085315e-05	k: 36	n:2390000
CDKN2A   2390000 perm   2482 sec   (963 perm/sec)   p_kst 1.506276e-05   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 6.359028e-01	ci left: 1.085478e-05	ci right 2.124978e-05	k: 37	n:2400000
CDKN2A   2400000 perm   2501 sec   (960 perm/sec)   p_kst 1.541667e-05   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 6.359028e-01	ci left: 1.080974e-05	ci right 2.116161e-05	k: 37	n:2410000
CDKN2A   2410000 perm   2520 sec   (956 perm/sec)   p_kst 1.535270e-05   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 6.359028e-01	ci left: 1.076507e-05	ci right 2.107416e-05	k: 37	n:2420000
CDKN2A   2420000 perm   2539 sec   (953 perm/sec)   p_kst 1.528926e-05   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 6.359029e-01	ci left: 1.072077e-05	ci right 2.098744e-05	k: 37	n:2430000
CDKN2A   2430000 perm   2558 sec   (950 perm/sec)   p_kst 1.522634e-05   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 6.359029e-01	ci left: 1.067683e-05	ci right 2.090143e-05	k: 37	n:2440000
CDKN2A   2440000 perm   2577 sec   (947 perm/sec)   p_kst 1.516393e-05   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 6.359029e-01	ci left: 1.063325e-05	ci right 2.081611e-05	k: 37	n:2450000
CDKN2A   2450000 perm   2596 sec   (944 perm/sec)   p_kst 1.510204e-05   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 6.359029e-01	ci left: 1.059003e-05	ci right 2.073150e-05	k: 37	n:2460000
CDKN2A   2460000 perm   2615 sec   (941 perm/sec)   p_kst 1.504065e-05   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 6.359030e-01	ci left: 1.054715e-05	ci right 2.064756e-05	k: 37	n:2470000
CDKN2A   2470000 perm   2634 sec   (938 perm/sec)   p_kst 1.497976e-05   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 6.359030e-01	ci left: 1.050462e-05	ci right 2.056431e-05	k: 37	n:2480000
CDKN2A   2480000 perm   2653 sec   (935 perm/sec)   p_kst 1.491935e-05   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 6.359030e-01	ci left: 1.046244e-05	ci right 2.048172e-05	k: 37	n:2490000
CDKN2A   2490000 perm   2673 sec   (932 perm/sec)   p_kst 1.485944e-05   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 6.359030e-01	ci left: 1.042059e-05	ci right 2.039979e-05	k: 37	n:2500000
CDKN2A   2500000 perm   2692 sec   (929 perm/sec)   p_kst 1.480000e-05   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 6.359030e-01	ci left: 1.037907e-05	ci right 2.031852e-05	k: 37	n:2510000
CDKN2A   2510000 perm   2712 sec   (926 perm/sec)   p_kst 1.474104e-05   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 6.359031e-01	ci left: 1.033788e-05	ci right 2.023789e-05	k: 37	n:2520000
CDKN2A   2520000 perm   2732 sec   (922 perm/sec)   p_kst 1.468254e-05   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 6.359031e-01	ci left: 1.029702e-05	ci right 2.015790e-05	k: 37	n:2530000
CDKN2A   2530000 perm   2754 sec   (919 perm/sec)   p_kst 1.462451e-05   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 6.359031e-01	ci left: 1.025648e-05	ci right 2.007854e-05	k: 37	n:2540000
CDKN2A   2540000 perm   2773 sec   (916 perm/sec)   p_kst 1.456693e-05   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 6.359031e-01	ci left: 1.021626e-05	ci right 1.999980e-05	k: 37	n:2550000
CDKN2A   2550000 perm   2793 sec   (913 perm/sec)   p_kst 1.450980e-05   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 6.359031e-01	ci left: 1.017635e-05	ci right 1.992167e-05	k: 37	n:2560000
CDKN2A   2560000 perm   2813 sec   (910 perm/sec)   p_kst 1.445313e-05   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 6.359031e-01	ci left: 1.013676e-05	ci right 1.984416e-05	k: 37	n:2570000
CDKN2A   2570000 perm   2833 sec   (907 perm/sec)   p_kst 1.439689e-05   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 6.359032e-01	ci left: 1.009747e-05	ci right 1.976724e-05	k: 37	n:2580000
CDKN2A   2580000 perm   2853 sec   (904 perm/sec)   p_kst 1.434109e-05   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 6.359032e-01	ci left: 1.005848e-05	ci right 1.969092e-05	k: 37	n:2590000
CDKN2A   2590000 perm   2873 sec   (901 perm/sec)   p_kst 1.428571e-05   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 6.276975e-01	ci left: 1.034274e-05	ci right 2.006070e-05	k: 38	n:2600000
CDKN2A   2600000 perm   2894 sec   (899 perm/sec)   p_kst 1.461538e-05   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.263211e+00	ci left: 9.280050e-08	ci right 2.768077e-06	k: 2	n:2610000
KS ci ratio: 6.276976e-01	ci left: 1.030311e-05	ci right 1.998384e-05	k: 38	n:2610000
CDKN2A   2610000 perm   2914 sec   (896 perm/sec)   p_kst 1.455939e-05   p_cons 7.662835e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
KS ci ratio: 6.276976e-01	ci left: 1.026378e-05	ci right 1.990757e-05	k: 38	n:2620000
CDKN2A   2620000 perm   2934 sec   (893 perm/sec)   p_kst 1.450382e-05   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
KS ci ratio: 6.276976e-01	ci left: 1.022476e-05	ci right 1.983187e-05	k: 38	n:2630000
CDKN2A   2630000 perm   2955 sec   (890 perm/sec)   p_kst 1.444867e-05   p_cons 7.604563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
KS ci ratio: 6.198016e-01	ci left: 1.050487e-05	ci right 2.019475e-05	k: 39	n:2640000
CDKN2A   2640000 perm   2975 sec   (887 perm/sec)   p_kst 1.477273e-05   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
KS ci ratio: 6.198016e-01	ci left: 1.046523e-05	ci right 2.011854e-05	k: 39	n:2650000
CDKN2A   2650000 perm   2996 sec   (885 perm/sec)   p_kst 1.471698e-05   p_cons 7.547170e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
KS ci ratio: 6.198016e-01	ci left: 1.042589e-05	ci right 2.004291e-05	k: 39	n:2660000
CDKN2A   2660000 perm   3017 sec   (882 perm/sec)   p_kst 1.466165e-05   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
KS ci ratio: 6.198017e-01	ci left: 1.038684e-05	ci right 1.996784e-05	k: 39	n:2670000
CDKN2A   2670000 perm   3037 sec   (879 perm/sec)   p_kst 1.460674e-05   p_cons 7.490637e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
KS ci ratio: 6.121963e-01	ci left: 1.066293e-05	ci right 2.032407e-05	k: 40	n:2680000
CDKN2A   2680000 perm   3058 sec   (876 perm/sec)   p_kst 1.492537e-05   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
KS ci ratio: 6.121964e-01	ci left: 1.062329e-05	ci right 2.024851e-05	k: 40	n:2690000
CDKN2A   2690000 perm   3079 sec   (874 perm/sec)   p_kst 1.486989e-05   p_cons 7.434944e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
KS ci ratio: 6.121964e-01	ci left: 1.058394e-05	ci right 2.017352e-05	k: 40	n:2700000
CDKN2A   2700000 perm   3101 sec   (871 perm/sec)   p_kst 1.481481e-05   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
KS ci ratio: 6.048643e-01	ci left: 1.085696e-05	ci right 2.052435e-05	k: 41	n:2710000
CDKN2A   2710000 perm   3122 sec   (868 perm/sec)   p_kst 1.512915e-05   p_cons 7.380074e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
KS ci ratio: 6.048644e-01	ci left: 1.081705e-05	ci right 2.044889e-05	k: 41	n:2720000
CDKN2A   2720000 perm   3143 sec   (865 perm/sec)   p_kst 1.507353e-05   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
KS ci ratio: 5.977896e-01	ci left: 1.108790e-05	ci right 2.079547e-05	k: 42	n:2730000
CDKN2A   2730000 perm   3165 sec   (863 perm/sec)   p_kst 1.538462e-05   p_cons 7.326007e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
KS ci ratio: 5.977896e-01	ci left: 1.104743e-05	ci right 2.071958e-05	k: 42	n:2740000
CDKN2A   2740000 perm   3186 sec   (860 perm/sec)   p_kst 1.532847e-05   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
KS ci ratio: 5.977896e-01	ci left: 1.100726e-05	ci right 2.064424e-05	k: 42	n:2750000
CDKN2A   2750000 perm   3207 sec   (857 perm/sec)   p_kst 1.527273e-05   p_cons 7.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
KS ci ratio: 5.977896e-01	ci left: 1.096738e-05	ci right 2.056944e-05	k: 42	n:2760000
CDKN2A   2760000 perm   3228 sec   (855 perm/sec)   p_kst 1.521739e-05   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
KS ci ratio: 5.909574e-01	ci left: 1.123443e-05	ci right 2.090995e-05	k: 43	n:2770000
CDKN2A   2770000 perm   3251 sec   (852 perm/sec)   p_kst 1.552347e-05   p_cons 7.220217e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
KS ci ratio: 5.909575e-01	ci left: 1.119402e-05	ci right 2.083473e-05	k: 43	n:2780000
CDKN2A   2780000 perm   3272 sec   (850 perm/sec)   p_kst 1.546763e-05   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
KS ci ratio: 5.909575e-01	ci left: 1.115390e-05	ci right 2.076006e-05	k: 43	n:2790000
CDKN2A   2790000 perm   3294 sec   (847 perm/sec)   p_kst 1.541219e-05   p_cons 7.168459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
KS ci ratio: 5.843543e-01	ci left: 1.141805e-05	ci right 2.109564e-05	k: 44	n:2800000
CDKN2A   2800000 perm   3316 sec   (844 perm/sec)   p_kst 1.571429e-05   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
KS ci ratio: 5.843543e-01	ci left: 1.137741e-05	ci right 2.102057e-05	k: 44	n:2810000
CDKN2A   2810000 perm   3338 sec   (842 perm/sec)   p_kst 1.565836e-05   p_cons 7.117438e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
KS ci ratio: 5.843543e-01	ci left: 1.133707e-05	ci right 2.094602e-05	k: 44	n:2820000
CDKN2A   2820000 perm   3360 sec   (839 perm/sec)   p_kst 1.560284e-05   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
KS ci ratio: 5.843543e-01	ci left: 1.129701e-05	ci right 2.087201e-05	k: 44	n:2830000
CDKN2A   2830000 perm   3382 sec   (837 perm/sec)   p_kst 1.554770e-05   p_cons 7.067138e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
KS ci ratio: 5.843544e-01	ci left: 1.125723e-05	ci right 2.079852e-05	k: 44	n:2840000
CDKN2A   2840000 perm   3404 sec   (834 perm/sec)   p_kst 1.549296e-05   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
KS ci ratio: 5.843544e-01	ci left: 1.121773e-05	ci right 2.072554e-05	k: 44	n:2850000
CDKN2A   2850000 perm   3426 sec   (832 perm/sec)   p_kst 1.543860e-05   p_cons 7.017544e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
KS ci ratio: 5.843544e-01	ci left: 1.117851e-05	ci right 2.065307e-05	k: 44	n:2860000
CDKN2A   2860000 perm   3448 sec   (829 perm/sec)   p_kst 1.538462e-05   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
KS ci ratio: 5.779677e-01	ci left: 1.143672e-05	ci right 2.098027e-05	k: 45	n:2870000
CDKN2A   2870000 perm   3470 sec   (827 perm/sec)   p_kst 1.567944e-05   p_cons 6.968641e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
KS ci ratio: 5.779678e-01	ci left: 1.139700e-05	ci right 2.090742e-05	k: 45	n:2880000
CDKN2A   2880000 perm   3493 sec   (825 perm/sec)   p_kst 1.562500e-05   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
KS ci ratio: 5.779678e-01	ci left: 1.135757e-05	ci right 2.083508e-05	k: 45	n:2890000
CDKN2A   2890000 perm   3515 sec   (822 perm/sec)   p_kst 1.557093e-05   p_cons 6.920415e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
KS ci ratio: 5.779678e-01	ci left: 1.131840e-05	ci right 2.076324e-05	k: 45	n:2900000
CDKN2A   2900000 perm   3537 sec   (820 perm/sec)   p_kst 1.551724e-05   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
KS ci ratio: 5.779678e-01	ci left: 1.127951e-05	ci right 2.069188e-05	k: 45	n:2910000
CDKN2A   2910000 perm   3559 sec   (818 perm/sec)   p_kst 1.546392e-05   p_cons 6.872852e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
KS ci ratio: 5.779678e-01	ci left: 1.124088e-05	ci right 2.062102e-05	k: 45	n:2920000
CDKN2A   2920000 perm   3582 sec   (815 perm/sec)   p_kst 1.541096e-05   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
KS ci ratio: 5.779678e-01	ci left: 1.120252e-05	ci right 2.055064e-05	k: 45	n:2930000
CDKN2A   2930000 perm   3604 sec   (813 perm/sec)   p_kst 1.535836e-05   p_cons 6.825939e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
KS ci ratio: 5.779678e-01	ci left: 1.116441e-05	ci right 2.048074e-05	k: 45	n:2940000
CDKN2A   2940000 perm   3627 sec   (811 perm/sec)   p_kst 1.530612e-05   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
KS ci ratio: 5.779679e-01	ci left: 1.112657e-05	ci right 2.041132e-05	k: 45	n:2950000
CDKN2A   2950000 perm   3649 sec   (808 perm/sec)   p_kst 1.525424e-05   p_cons 6.779661e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
KS ci ratio: 5.779679e-01	ci left: 1.108898e-05	ci right 2.034236e-05	k: 45	n:2960000
CDKN2A   2960000 perm   3673 sec   (806 perm/sec)   p_kst 1.520270e-05   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
KS ci ratio: 5.779679e-01	ci left: 1.105164e-05	ci right 2.027387e-05	k: 45	n:2970000
CDKN2A   2970000 perm   3695 sec   (804 perm/sec)   p_kst 1.515152e-05   p_cons 6.734007e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
KS ci ratio: 5.717862e-01	ci left: 1.130129e-05	ci right 2.058973e-05	k: 46	n:2980000
CDKN2A   2980000 perm   3718 sec   (801 perm/sec)   p_kst 1.543624e-05   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
KS ci ratio: 5.657986e-01	ci left: 1.154980e-05	ci right 2.090297e-05	k: 47	n:2990000
CDKN2A   2990000 perm   3741 sec   (799 perm/sec)   p_kst 1.571906e-05   p_cons 6.688963e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
KS ci ratio: 5.657986e-01	ci left: 1.151130e-05	ci right 2.083329e-05	k: 47	n:3000000
CDKN2A   3000000 perm   3764 sec   (797 perm/sec)   p_kst 1.566667e-05   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
KS ci ratio: 5.657987e-01	ci left: 1.147306e-05	ci right 2.076408e-05	k: 47	n:3010000
CDKN2A   3010000 perm   3787 sec   (795 perm/sec)   p_kst 1.561462e-05   p_cons 6.644518e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
KS ci ratio: 5.599954e-01	ci left: 1.171903e-05	ci right 2.107314e-05	k: 48	n:3020000
CDKN2A   3020000 perm   3810 sec   (793 perm/sec)   p_kst 1.589404e-05   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
KS ci ratio: 5.599954e-01	ci left: 1.168036e-05	ci right 2.100359e-05	k: 48	n:3030000
CDKN2A   3030000 perm   3833 sec   (790 perm/sec)   p_kst 1.584158e-05   p_cons 6.600660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
KS ci ratio: 5.599954e-01	ci left: 1.164193e-05	ci right 2.093450e-05	k: 48	n:3040000
CDKN2A   3040000 perm   3856 sec   (788 perm/sec)   p_kst 1.578947e-05   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
KS ci ratio: 5.599954e-01	ci left: 1.160376e-05	ci right 2.086586e-05	k: 48	n:3050000
CDKN2A   3050000 perm   3880 sec   (786 perm/sec)   p_kst 1.573770e-05   p_cons 6.557377e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
KS ci ratio: 5.599954e-01	ci left: 1.156584e-05	ci right 2.079767e-05	k: 48	n:3060000
CDKN2A   3060000 perm   3903 sec   (784 perm/sec)   p_kst 1.568627e-05   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
KS ci ratio: 5.543671e-01	ci left: 1.180799e-05	ci right 2.110112e-05	k: 49	n:3070000
CDKN2A   3070000 perm   3927 sec   (782 perm/sec)   p_kst 1.596091e-05   p_cons 6.514658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
KS ci ratio: 5.543671e-01	ci left: 1.176966e-05	ci right 2.103261e-05	k: 49	n:3080000
CDKN2A   3080000 perm   3950 sec   (780 perm/sec)   p_kst 1.590909e-05   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
KS ci ratio: 5.489052e-01	ci left: 1.201004e-05	ci right 2.133288e-05	k: 50	n:3090000
CDKN2A   3090000 perm   3974 sec   (778 perm/sec)   p_kst 1.618123e-05   p_cons 6.472492e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
KS ci ratio: 5.489052e-01	ci left: 1.197130e-05	ci right 2.126406e-05	k: 50	n:3100000
CDKN2A   3100000 perm   3998 sec   (775 perm/sec)   p_kst 1.612903e-05   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
KS ci ratio: 5.436016e-01	ci left: 1.220994e-05	ci right 2.156122e-05	k: 51	n:3110000
CDKN2A   3110000 perm   4021 sec   (773 perm/sec)   p_kst 1.639871e-05   p_cons 6.430868e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
KS ci ratio: 5.384488e-01	ci left: 1.244749e-05	ci right 2.185606e-05	k: 52	n:3120000
CDKN2A   3120000 perm   4045 sec   (771 perm/sec)   p_kst 1.666667e-05   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
KS ci ratio: 5.384488e-01	ci left: 1.240772e-05	ci right 2.178623e-05	k: 52	n:3130000
CDKN2A   3130000 perm   4069 sec   (769 perm/sec)   p_kst 1.661342e-05   p_cons 6.389776e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
KS ci ratio: 5.384488e-01	ci left: 1.236820e-05	ci right 2.171685e-05	k: 52	n:3140000
CDKN2A   3140000 perm   4093 sec   (767 perm/sec)   p_kst 1.656051e-05   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
KS ci ratio: 5.384488e-01	ci left: 1.232894e-05	ci right 2.164791e-05	k: 52	n:3150000
CDKN2A   3150000 perm   4117 sec   (765 perm/sec)   p_kst 1.650794e-05   p_cons 6.349206e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
KS ci ratio: 5.384488e-01	ci left: 1.228992e-05	ci right 2.157940e-05	k: 52	n:3160000
CDKN2A   3160000 perm   4141 sec   (763 perm/sec)   p_kst 1.645570e-05   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
KS ci ratio: 5.384488e-01	ci left: 1.225116e-05	ci right 2.151133e-05	k: 52	n:3170000
CDKN2A   3170000 perm   4165 sec   (761 perm/sec)   p_kst 1.640379e-05   p_cons 6.309148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
KS ci ratio: 5.384488e-01	ci left: 1.221263e-05	ci right 2.144368e-05	k: 52	n:3180000
CDKN2A   3180000 perm   4189 sec   (759 perm/sec)   p_kst 1.635220e-05   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
KS ci ratio: 5.384489e-01	ci left: 1.217435e-05	ci right 2.137646e-05	k: 52	n:3190000
CDKN2A   3190000 perm   4213 sec   (757 perm/sec)   p_kst 1.630094e-05   p_cons 6.269592e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
KS ci ratio: 5.384489e-01	ci left: 1.213630e-05	ci right 2.130966e-05	k: 52	n:3200000
CDKN2A   3200000 perm   4237 sec   (755 perm/sec)   p_kst 1.625000e-05   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
KS ci ratio: 5.384489e-01	ci left: 1.209849e-05	ci right 2.124327e-05	k: 52	n:3210000
CDKN2A   3210000 perm   4262 sec   (753 perm/sec)   p_kst 1.619938e-05   p_cons 6.230530e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
KS ci ratio: 5.384489e-01	ci left: 1.206092e-05	ci right 2.117730e-05	k: 52	n:3220000
CDKN2A   3220000 perm   4287 sec   (751 perm/sec)   p_kst 1.614907e-05   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
KS ci ratio: 5.384489e-01	ci left: 1.202358e-05	ci right 2.111174e-05	k: 52	n:3230000
CDKN2A   3230000 perm   4311 sec   (749 perm/sec)   p_kst 1.609907e-05   p_cons 6.191950e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
KS ci ratio: 5.384489e-01	ci left: 1.198647e-05	ci right 2.104658e-05	k: 52	n:3240000
CDKN2A   3240000 perm   4335 sec   (747 perm/sec)   p_kst 1.604938e-05   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
KS ci ratio: 5.384489e-01	ci left: 1.194959e-05	ci right 2.098182e-05	k: 52	n:3250000
CDKN2A   3250000 perm   4361 sec   (745 perm/sec)   p_kst 1.600000e-05   p_cons 6.153846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
KS ci ratio: 5.384490e-01	ci left: 1.191293e-05	ci right 2.091746e-05	k: 52	n:3260000
CDKN2A   3260000 perm   4385 sec   (743 perm/sec)   p_kst 1.595092e-05   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
KS ci ratio: 5.384490e-01	ci left: 1.187650e-05	ci right 2.085349e-05	k: 52	n:3270000
CDKN2A   3270000 perm   4410 sec   (741 perm/sec)   p_kst 1.590214e-05   p_cons 6.116208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
KS ci ratio: 5.334400e-01	ci left: 1.210388e-05	ci right 2.113571e-05	k: 53	n:3280000
CDKN2A   3280000 perm   4435 sec   (740 perm/sec)   p_kst 1.615854e-05   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
KS ci ratio: 5.334400e-01	ci left: 1.206709e-05	ci right 2.107147e-05	k: 53	n:3290000
CDKN2A   3290000 perm   4460 sec   (738 perm/sec)   p_kst 1.610942e-05   p_cons 6.079027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
KS ci ratio: 5.334400e-01	ci left: 1.203052e-05	ci right 2.100762e-05	k: 53	n:3300000
CDKN2A   3300000 perm   4485 sec   (736 perm/sec)   p_kst 1.606061e-05   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
KS ci ratio: 5.334400e-01	ci left: 1.199417e-05	ci right 2.094415e-05	k: 53	n:3310000
CDKN2A   3310000 perm   4510 sec   (734 perm/sec)   p_kst 1.601208e-05   p_cons 6.042296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
KS ci ratio: 5.334400e-01	ci left: 1.195805e-05	ci right 2.088106e-05	k: 53	n:3320000
CDKN2A   3320000 perm   4535 sec   (732 perm/sec)   p_kst 1.596386e-05   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
KS ci ratio: 5.334400e-01	ci left: 1.192214e-05	ci right 2.081836e-05	k: 53	n:3330000
CDKN2A   3330000 perm   4561 sec   (730 perm/sec)   p_kst 1.591592e-05   p_cons 6.006006e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
KS ci ratio: 5.334400e-01	ci left: 1.188644e-05	ci right 2.075603e-05	k: 53	n:3340000
CDKN2A   3340000 perm   4586 sec   (728 perm/sec)   p_kst 1.586826e-05   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
KS ci ratio: 5.334401e-01	ci left: 1.185096e-05	ci right 2.069407e-05	k: 53	n:3350000
CDKN2A   3350000 perm   4611 sec   (726 perm/sec)   p_kst 1.582090e-05   p_cons 5.970149e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
KS ci ratio: 5.334401e-01	ci left: 1.181569e-05	ci right 2.063248e-05	k: 53	n:3360000
CDKN2A   3360000 perm   4637 sec   (725 perm/sec)   p_kst 1.577381e-05   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
KS ci ratio: 5.334401e-01	ci left: 1.178063e-05	ci right 2.057126e-05	k: 53	n:3370000
CDKN2A   3370000 perm   4662 sec   (723 perm/sec)   p_kst 1.572700e-05   p_cons 5.934718e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
KS ci ratio: 5.334401e-01	ci left: 1.174577e-05	ci right 2.051040e-05	k: 53	n:3380000
CDKN2A   3380000 perm   4688 sec   (721 perm/sec)   p_kst 1.568047e-05   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
KS ci ratio: 5.334401e-01	ci left: 1.171112e-05	ci right 2.044989e-05	k: 53	n:3390000
CDKN2A   3390000 perm   4713 sec   (719 perm/sec)   p_kst 1.563422e-05   p_cons 5.899705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
KS ci ratio: 5.334401e-01	ci left: 1.167668e-05	ci right 2.038975e-05	k: 53	n:3400000
CDKN2A   3400000 perm   4739 sec   (717 perm/sec)   p_kst 1.558824e-05   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
KS ci ratio: 5.334401e-01	ci left: 1.164244e-05	ci right 2.032995e-05	k: 53	n:3410000
CDKN2A   3410000 perm   4765 sec   (716 perm/sec)   p_kst 1.554252e-05   p_cons 5.865103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
KS ci ratio: 5.334401e-01	ci left: 1.160839e-05	ci right 2.027051e-05	k: 53	n:3420000
CDKN2A   3420000 perm   4791 sec   (714 perm/sec)   p_kst 1.549708e-05   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
KS ci ratio: 5.334402e-01	ci left: 1.157455e-05	ci right 2.021141e-05	k: 53	n:3430000
CDKN2A   3430000 perm   4816 sec   (712 perm/sec)   p_kst 1.545190e-05   p_cons 5.830904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
KS ci ratio: 5.334402e-01	ci left: 1.154090e-05	ci right 2.015266e-05	k: 53	n:3440000
CDKN2A   3440000 perm   4842 sec   (710 perm/sec)   p_kst 1.540698e-05   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
KS ci ratio: 5.334402e-01	ci left: 1.150745e-05	ci right 2.009424e-05	k: 53	n:3450000
CDKN2A   3450000 perm   4868 sec   (709 perm/sec)   p_kst 1.536232e-05   p_cons 5.797101e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
KS ci ratio: 5.334402e-01	ci left: 1.147419e-05	ci right 2.003617e-05	k: 53	n:3460000
CDKN2A   3460000 perm   4894 sec   (707 perm/sec)   p_kst 1.531792e-05   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
KS ci ratio: 5.334402e-01	ci left: 1.144113e-05	ci right 1.997843e-05	k: 53	n:3470000
CDKN2A   3470000 perm   4920 sec   (705 perm/sec)   p_kst 1.527378e-05   p_cons 5.763689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
KS ci ratio: 5.334402e-01	ci left: 1.140825e-05	ci right 1.992102e-05	k: 53	n:3480000
CDKN2A   3480000 perm   4947 sec   (703 perm/sec)   p_kst 1.522989e-05   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
KS ci ratio: 5.334402e-01	ci left: 1.137556e-05	ci right 1.986394e-05	k: 53	n:3490000
CDKN2A   3490000 perm   4973 sec   (702 perm/sec)   p_kst 1.518625e-05   p_cons 5.730659e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
KS ci ratio: 5.334402e-01	ci left: 1.134306e-05	ci right 1.980718e-05	k: 53	n:3500000
CDKN2A   3500000 perm   5000 sec   (700 perm/sec)   p_kst 1.514286e-05   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
KS ci ratio: 5.285685e-01	ci left: 1.155742e-05	ci right 2.007354e-05	k: 54	n:3510000
CDKN2A   3510000 perm   5026 sec   (698 perm/sec)   p_kst 1.538462e-05   p_cons 5.698006e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
KS ci ratio: 5.285685e-01	ci left: 1.152458e-05	ci right 2.001651e-05	k: 54	n:3520000
CDKN2A   3520000 perm   5053 sec   (697 perm/sec)   p_kst 1.534091e-05   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
KS ci ratio: 5.285685e-01	ci left: 1.149194e-05	ci right 1.995981e-05	k: 54	n:3530000
CDKN2A   3530000 perm   5080 sec   (695 perm/sec)   p_kst 1.529745e-05   p_cons 5.665722e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
KS ci ratio: 5.285685e-01	ci left: 1.145947e-05	ci right 1.990342e-05	k: 54	n:3540000
CDKN2A   3540000 perm   5107 sec   (693 perm/sec)   p_kst 1.525424e-05   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
KS ci ratio: 5.238278e-01	ci left: 1.167144e-05	ci right 2.016617e-05	k: 55	n:3550000
CDKN2A   3550000 perm   5134 sec   (692 perm/sec)   p_kst 1.549296e-05   p_cons 5.633803e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
KS ci ratio: 5.238278e-01	ci left: 1.163865e-05	ci right 2.010952e-05	k: 55	n:3560000
CDKN2A   3560000 perm   5160 sec   (690 perm/sec)   p_kst 1.544944e-05   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
KS ci ratio: 5.238279e-01	ci left: 1.160605e-05	ci right 2.005319e-05	k: 55	n:3570000
CDKN2A   3570000 perm   5187 sec   (688 perm/sec)   p_kst 1.540616e-05   p_cons 5.602241e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
KS ci ratio: 5.238279e-01	ci left: 1.157363e-05	ci right 1.999718e-05	k: 55	n:3580000
CDKN2A   3580000 perm   5214 sec   (687 perm/sec)   p_kst 1.536313e-05   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
KS ci ratio: 5.238279e-01	ci left: 1.154139e-05	ci right 1.994147e-05	k: 55	n:3590000
CDKN2A   3590000 perm   5241 sec   (685 perm/sec)   p_kst 1.532033e-05   p_cons 5.571031e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
KS ci ratio: 5.238279e-01	ci left: 1.150933e-05	ci right 1.988608e-05	k: 55	n:3600000
CDKN2A   3600000 perm   5268 sec   (683 perm/sec)   p_kst 1.527778e-05   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
KS ci ratio: 5.238279e-01	ci left: 1.147745e-05	ci right 1.983100e-05	k: 55	n:3610000
CDKN2A   3610000 perm   5295 sec   (682 perm/sec)   p_kst 1.523546e-05   p_cons 5.540166e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
KS ci ratio: 5.238279e-01	ci left: 1.144575e-05	ci right 1.977621e-05	k: 55	n:3620000
CDKN2A   3620000 perm   5323 sec   (680 perm/sec)   p_kst 1.519337e-05   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
KS ci ratio: 5.238279e-01	ci left: 1.141421e-05	ci right 1.972173e-05	k: 55	n:3630000
CDKN2A   3630000 perm   5350 sec   (678 perm/sec)   p_kst 1.515152e-05   p_cons 5.509642e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
KS ci ratio: 5.238279e-01	ci left: 1.138286e-05	ci right 1.966755e-05	k: 55	n:3640000
CDKN2A   3640000 perm   5378 sec   (677 perm/sec)   p_kst 1.510989e-05   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
KS ci ratio: 5.238279e-01	ci left: 1.135167e-05	ci right 1.961367e-05	k: 55	n:3650000
CDKN2A   3650000 perm   5405 sec   (675 perm/sec)   p_kst 1.506849e-05   p_cons 5.479452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
KS ci ratio: 5.238280e-01	ci left: 1.132066e-05	ci right 1.956008e-05	k: 55	n:3660000
CDKN2A   3660000 perm   5432 sec   (674 perm/sec)   p_kst 1.502732e-05   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
KS ci ratio: 5.238280e-01	ci left: 1.128981e-05	ci right 1.950678e-05	k: 55	n:3670000
CDKN2A   3670000 perm   5460 sec   (672 perm/sec)   p_kst 1.498638e-05   p_cons 5.449591e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
KS ci ratio: 5.192126e-01	ci left: 1.149507e-05	ci right 1.976100e-05	k: 56	n:3680000
CDKN2A   3680000 perm   5487 sec   (671 perm/sec)   p_kst 1.521739e-05   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
KS ci ratio: 5.147171e-01	ci left: 1.169954e-05	ci right 2.001353e-05	k: 57	n:3690000
CDKN2A   3690000 perm   5515 sec   (669 perm/sec)   p_kst 1.544715e-05   p_cons 5.420054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
KS ci ratio: 5.147171e-01	ci left: 1.166792e-05	ci right 1.995944e-05	k: 57	n:3700000
CDKN2A   3700000 perm   5543 sec   (668 perm/sec)   p_kst 1.540541e-05   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
KS ci ratio: 5.147171e-01	ci left: 1.163647e-05	ci right 1.990565e-05	k: 57	n:3710000
CDKN2A   3710000 perm   5571 sec   (666 perm/sec)   p_kst 1.536388e-05   p_cons 5.390836e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
KS ci ratio: 5.147171e-01	ci left: 1.160519e-05	ci right 1.985214e-05	k: 57	n:3720000
CDKN2A   3720000 perm   5599 sec   (664 perm/sec)   p_kst 1.532258e-05   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
KS ci ratio: 5.147171e-01	ci left: 1.157408e-05	ci right 1.979891e-05	k: 57	n:3730000
CDKN2A   3730000 perm   5627 sec   (663 perm/sec)   p_kst 1.528150e-05   p_cons 5.361930e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
KS ci ratio: 5.147172e-01	ci left: 1.154313e-05	ci right 1.974597e-05	k: 57	n:3740000
CDKN2A   3740000 perm   5655 sec   (661 perm/sec)   p_kst 1.524064e-05   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
KS ci ratio: 5.147172e-01	ci left: 1.151235e-05	ci right 1.969332e-05	k: 57	n:3750000
CDKN2A   3750000 perm   5684 sec   (660 perm/sec)   p_kst 1.520000e-05   p_cons 5.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
KS ci ratio: 5.147172e-01	ci left: 1.148173e-05	ci right 1.964094e-05	k: 57	n:3760000
CDKN2A   3760000 perm   5712 sec   (658 perm/sec)   p_kst 1.515957e-05   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
KS ci ratio: 5.147172e-01	ci left: 1.145128e-05	ci right 1.958885e-05	k: 57	n:3770000
CDKN2A   3770000 perm   5741 sec   (657 perm/sec)   p_kst 1.511936e-05   p_cons 5.305040e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
KS ci ratio: 5.147172e-01	ci left: 1.142098e-05	ci right 1.953702e-05	k: 57	n:3780000
CDKN2A   3780000 perm   5769 sec   (655 perm/sec)   p_kst 1.507937e-05   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
KS ci ratio: 5.147172e-01	ci left: 1.139085e-05	ci right 1.948547e-05	k: 57	n:3790000
CDKN2A   3790000 perm   5798 sec   (654 perm/sec)   p_kst 1.503958e-05   p_cons 5.277045e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
KS ci ratio: 5.147172e-01	ci left: 1.136087e-05	ci right 1.943420e-05	k: 57	n:3800000
CDKN2A   3800000 perm   5827 sec   (652 perm/sec)   p_kst 1.500000e-05   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
KS ci ratio: 5.147172e-01	ci left: 1.133105e-05	ci right 1.938319e-05	k: 57	n:3810000
CDKN2A   3810000 perm   5855 sec   (651 perm/sec)   p_kst 1.496063e-05   p_cons 5.249344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
KS ci ratio: 5.147172e-01	ci left: 1.130139e-05	ci right 1.933245e-05	k: 57	n:3820000
CDKN2A   3820000 perm   5884 sec   (649 perm/sec)   p_kst 1.492147e-05   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
KS ci ratio: 5.147173e-01	ci left: 1.127188e-05	ci right 1.928197e-05	k: 57	n:3830000
CDKN2A   3830000 perm   5913 sec   (648 perm/sec)   p_kst 1.488251e-05   p_cons 5.221932e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
KS ci ratio: 5.147173e-01	ci left: 1.124253e-05	ci right 1.923176e-05	k: 57	n:3840000
CDKN2A   3840000 perm   5942 sec   (646 perm/sec)   p_kst 1.484375e-05   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
KS ci ratio: 5.147173e-01	ci left: 1.121333e-05	ci right 1.918181e-05	k: 57	n:3850000
CDKN2A   3850000 perm   5971 sec   (645 perm/sec)   p_kst 1.480519e-05   p_cons 5.194805e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
KS ci ratio: 5.147173e-01	ci left: 1.118428e-05	ci right 1.913211e-05	k: 57	n:3860000
CDKN2A   3860000 perm   5999 sec   (643 perm/sec)   p_kst 1.476684e-05   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
KS ci ratio: 5.147173e-01	ci left: 1.115538e-05	ci right 1.908267e-05	k: 57	n:3870000
CDKN2A   3870000 perm   6028 sec   (642 perm/sec)   p_kst 1.472868e-05   p_cons 5.167959e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
KS ci ratio: 5.147173e-01	ci left: 1.112663e-05	ci right 1.903349e-05	k: 57	n:3880000
CDKN2A   3880000 perm   6057 sec   (641 perm/sec)   p_kst 1.469072e-05   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
KS ci ratio: 5.147173e-01	ci left: 1.109802e-05	ci right 1.898456e-05	k: 57	n:3890000
CDKN2A   3890000 perm   6086 sec   (639 perm/sec)   p_kst 1.465296e-05   p_cons 5.141388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
KS ci ratio: 5.147173e-01	ci left: 1.106957e-05	ci right 1.893589e-05	k: 57	n:3900000
CDKN2A   3900000 perm   6115 sec   (638 perm/sec)   p_kst 1.461538e-05   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
KS ci ratio: 5.060659e-01	ci left: 1.148686e-05	ci right 1.946433e-05	k: 59	n:3910000
CDKN2A   3910000 perm   6145 sec   (636 perm/sec)   p_kst 1.508951e-05   p_cons 5.115090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
KS ci ratio: 5.019006e-01	ci left: 1.168020e-05	ci right 1.970197e-05	k: 60	n:3920000
CDKN2A   3920000 perm   6174 sec   (635 perm/sec)   p_kst 1.530612e-05   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
KS ci ratio: 5.019006e-01	ci left: 1.165048e-05	ci right 1.965184e-05	k: 60	n:3930000
CDKN2A   3930000 perm   6204 sec   (633 perm/sec)   p_kst 1.526718e-05   p_cons 5.089059e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
KS ci ratio: 5.019006e-01	ci left: 1.162091e-05	ci right 1.960196e-05	k: 60	n:3940000
CDKN2A   3940000 perm   6234 sec   (632 perm/sec)   p_kst 1.522843e-05   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
KS ci ratio: 5.019006e-01	ci left: 1.159149e-05	ci right 1.955234e-05	k: 60	n:3950000
CDKN2A   3950000 perm   6264 sec   (631 perm/sec)   p_kst 1.518987e-05   p_cons 5.063291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
KS ci ratio: 5.019006e-01	ci left: 1.156222e-05	ci right 1.950296e-05	k: 60	n:3960000
CDKN2A   3960000 perm   6293 sec   (629 perm/sec)   p_kst 1.515152e-05   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
KS ci ratio: 5.019007e-01	ci left: 1.153310e-05	ci right 1.945384e-05	k: 60	n:3970000
CDKN2A   3970000 perm   6323 sec   (628 perm/sec)   p_kst 1.511335e-05   p_cons 5.037783e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
KS ci ratio: 5.019007e-01	ci left: 1.150412e-05	ci right 1.940496e-05	k: 60	n:3980000
CDKN2A   3980000 perm   6352 sec   (627 perm/sec)   p_kst 1.507538e-05   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
KS ci ratio: 5.019007e-01	ci left: 1.147529e-05	ci right 1.935632e-05	k: 60	n:3990000
CDKN2A   3990000 perm   6382 sec   (625 perm/sec)   p_kst 1.503759e-05   p_cons 5.012531e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
KS ci ratio: 5.019007e-01	ci left: 1.144660e-05	ci right 1.930793e-05	k: 60	n:4000000
CDKN2A   4000000 perm   6412 sec   (624 perm/sec)   p_kst 1.500000e-05   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
KS ci ratio: 5.019007e-01	ci left: 1.141805e-05	ci right 1.925978e-05	k: 60	n:4010000
CDKN2A   4010000 perm   6442 sec   (622 perm/sec)   p_kst 1.496259e-05   p_cons 4.987531e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
KS ci ratio: 5.019007e-01	ci left: 1.138965e-05	ci right 1.921187e-05	k: 60	n:4020000
CDKN2A   4020000 perm   6472 sec   (621 perm/sec)   p_kst 1.492537e-05   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
KS ci ratio: 5.019007e-01	ci left: 1.136139e-05	ci right 1.916420e-05	k: 60	n:4030000
CDKN2A   4030000 perm   6503 sec   (620 perm/sec)   p_kst 1.488834e-05   p_cons 4.962779e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
KS ci ratio: 5.019007e-01	ci left: 1.133327e-05	ci right 1.911676e-05	k: 60	n:4040000
CDKN2A   4040000 perm   6533 sec   (618 perm/sec)   p_kst 1.485149e-05   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
KS ci ratio: 5.019007e-01	ci left: 1.130528e-05	ci right 1.906956e-05	k: 60	n:4050000
CDKN2A   4050000 perm   6563 sec   (617 perm/sec)   p_kst 1.481481e-05   p_cons 4.938272e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
KS ci ratio: 5.019007e-01	ci left: 1.127744e-05	ci right 1.902259e-05	k: 60	n:4060000
CDKN2A   4060000 perm   6593 sec   (616 perm/sec)   p_kst 1.477833e-05   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
KS ci ratio: 4.978366e-01	ci left: 1.146443e-05	ci right 1.925231e-05	k: 61	n:4070000
CDKN2A   4070000 perm   6624 sec   (614 perm/sec)   p_kst 1.498771e-05   p_cons 4.914005e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
KS ci ratio: 4.978367e-01	ci left: 1.143633e-05	ci right 1.920512e-05	k: 61	n:4080000
CDKN2A   4080000 perm   6654 sec   (613 perm/sec)   p_kst 1.495098e-05   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
KS ci ratio: 4.978367e-01	ci left: 1.140837e-05	ci right 1.915816e-05	k: 61	n:4090000
CDKN2A   4090000 perm   6685 sec   (612 perm/sec)   p_kst 1.491443e-05   p_cons 4.889976e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
KS ci ratio: 4.938697e-01	ci left: 1.159393e-05	ci right 1.938562e-05	k: 62	n:4100000
CDKN2A   4100000 perm   6716 sec   (611 perm/sec)   p_kst 1.512195e-05   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
KS ci ratio: 4.938697e-01	ci left: 1.156572e-05	ci right 1.933845e-05	k: 62	n:4110000
CDKN2A   4110000 perm   6747 sec   (609 perm/sec)   p_kst 1.508516e-05   p_cons 4.866180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
KS ci ratio: 4.899961e-01	ci left: 1.175025e-05	ci right 1.956413e-05	k: 63	n:4120000
CDKN2A   4120000 perm   6778 sec   (608 perm/sec)   p_kst 1.529126e-05   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
KS ci ratio: 4.899961e-01	ci left: 1.172179e-05	ci right 1.951675e-05	k: 63	n:4130000
CDKN2A   4130000 perm   6809 sec   (607 perm/sec)   p_kst 1.525424e-05   p_cons 4.842615e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
KS ci ratio: 4.862123e-01	ci left: 1.190529e-05	ci right 1.974068e-05	k: 64	n:4140000
CDKN2A   4140000 perm   6840 sec   (605 perm/sec)   p_kst 1.545894e-05   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
KS ci ratio: 4.862123e-01	ci left: 1.187660e-05	ci right 1.969311e-05	k: 64	n:4150000
CDKN2A   4150000 perm   6870 sec   (604 perm/sec)   p_kst 1.542169e-05   p_cons 4.819277e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
KS ci ratio: 4.862123e-01	ci left: 1.184805e-05	ci right 1.964577e-05	k: 64	n:4160000
CDKN2A   4160000 perm   6902 sec   (603 perm/sec)   p_kst 1.538462e-05   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
KS ci ratio: 4.862123e-01	ci left: 1.181964e-05	ci right 1.959866e-05	k: 64	n:4170000
CDKN2A   4170000 perm   6933 sec   (601 perm/sec)   p_kst 1.534772e-05   p_cons 4.796163e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
KS ci ratio: 4.862123e-01	ci left: 1.179136e-05	ci right 1.955177e-05	k: 64	n:4180000
CDKN2A   4180000 perm   6964 sec   (600 perm/sec)   p_kst 1.531100e-05   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
KS ci ratio: 4.862123e-01	ci left: 1.176322e-05	ci right 1.950511e-05	k: 64	n:4190000
CDKN2A   4190000 perm   6996 sec   (599 perm/sec)   p_kst 1.527446e-05   p_cons 4.773270e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
KS ci ratio: 4.825148e-01	ci left: 1.194422e-05	ci right 1.972563e-05	k: 65	n:4200000
CDKN2A   4200000 perm   7028 sec   (598 perm/sec)   p_kst 1.547619e-05   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
KS ci ratio: 4.825148e-01	ci left: 1.191585e-05	ci right 1.967878e-05	k: 65	n:4210000
CDKN2A   4210000 perm   7059 sec   (596 perm/sec)   p_kst 1.543943e-05   p_cons 4.750594e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
KS ci ratio: 4.825148e-01	ci left: 1.188761e-05	ci right 1.963215e-05	k: 65	n:4220000
CDKN2A   4220000 perm   7091 sec   (595 perm/sec)   p_kst 1.540284e-05   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
KS ci ratio: 4.789004e-01	ci left: 1.206725e-05	ci right 1.985059e-05	k: 66	n:4230000
CDKN2A   4230000 perm   7123 sec   (594 perm/sec)   p_kst 1.560284e-05   p_cons 4.728132e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
KS ci ratio: 4.789004e-01	ci left: 1.203879e-05	ci right 1.980377e-05	k: 66	n:4240000
CDKN2A   4240000 perm   7154 sec   (593 perm/sec)   p_kst 1.556604e-05   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
KS ci ratio: 4.789004e-01	ci left: 1.201047e-05	ci right 1.975718e-05	k: 66	n:4250000
CDKN2A   4250000 perm   7186 sec   (591 perm/sec)   p_kst 1.552941e-05   p_cons 4.705882e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
KS ci ratio: 4.789004e-01	ci left: 1.198227e-05	ci right 1.971080e-05	k: 66	n:4260000
CDKN2A   4260000 perm   7218 sec   (590 perm/sec)   p_kst 1.549296e-05   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
KS ci ratio: 4.789004e-01	ci left: 1.195421e-05	ci right 1.966464e-05	k: 66	n:4270000
CDKN2A   4270000 perm   7250 sec   (589 perm/sec)   p_kst 1.545667e-05   p_cons 4.683841e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
KS ci ratio: 4.789004e-01	ci left: 1.192628e-05	ci right 1.961869e-05	k: 66	n:4280000
CDKN2A   4280000 perm   7282 sec   (588 perm/sec)   p_kst 1.542056e-05   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
KS ci ratio: 4.789004e-01	ci left: 1.189848e-05	ci right 1.957296e-05	k: 66	n:4290000
CDKN2A   4290000 perm   7314 sec   (587 perm/sec)   p_kst 1.538462e-05   p_cons 4.662005e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
KS ci ratio: 4.789004e-01	ci left: 1.187081e-05	ci right 1.952744e-05	k: 66	n:4300000
CDKN2A   4300000 perm   7347 sec   (585 perm/sec)   p_kst 1.534884e-05   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
KS ci ratio: 4.789004e-01	ci left: 1.184327e-05	ci right 1.948214e-05	k: 66	n:4310000
CDKN2A   4310000 perm   7379 sec   (584 perm/sec)   p_kst 1.531323e-05   p_cons 4.640371e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
KS ci ratio: 4.789005e-01	ci left: 1.181585e-05	ci right 1.943704e-05	k: 66	n:4320000
CDKN2A   4320000 perm   7412 sec   (583 perm/sec)   p_kst 1.527778e-05   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
KS ci ratio: 4.789005e-01	ci left: 1.178856e-05	ci right 1.939215e-05	k: 66	n:4330000
CDKN2A   4330000 perm   7445 sec   (582 perm/sec)   p_kst 1.524249e-05   p_cons 4.618938e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
KS ci ratio: 4.789005e-01	ci left: 1.176140e-05	ci right 1.934747e-05	k: 66	n:4340000
CDKN2A   4340000 perm   7477 sec   (580 perm/sec)   p_kst 1.520737e-05   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
KS ci ratio: 4.753661e-01	ci left: 1.193659e-05	ci right 1.956033e-05	k: 67	n:4350000
CDKN2A   4350000 perm   7510 sec   (579 perm/sec)   p_kst 1.540230e-05   p_cons 4.597701e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
KS ci ratio: 4.753661e-01	ci left: 1.190921e-05	ci right 1.951547e-05	k: 67	n:4360000
CDKN2A   4360000 perm   7542 sec   (578 perm/sec)   p_kst 1.536697e-05   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
KS ci ratio: 4.753661e-01	ci left: 1.188196e-05	ci right 1.947081e-05	k: 67	n:4370000
CDKN2A   4370000 perm   7575 sec   (577 perm/sec)   p_kst 1.533181e-05   p_cons 4.576659e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
KS ci ratio: 4.753661e-01	ci left: 1.185483e-05	ci right 1.942636e-05	k: 67	n:4380000
CDKN2A   4380000 perm   7607 sec   (576 perm/sec)   p_kst 1.529680e-05   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
KS ci ratio: 4.753661e-01	ci left: 1.182783e-05	ci right 1.938211e-05	k: 67	n:4390000
CDKN2A   4390000 perm   7640 sec   (575 perm/sec)   p_kst 1.526196e-05   p_cons 4.555809e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
KS ci ratio: 4.753661e-01	ci left: 1.180095e-05	ci right 1.933806e-05	k: 67	n:4400000
CDKN2A   4400000 perm   7673 sec   (573 perm/sec)   p_kst 1.522727e-05   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
KS ci ratio: 4.753661e-01	ci left: 1.177419e-05	ci right 1.929421e-05	k: 67	n:4410000
CDKN2A   4410000 perm   7706 sec   (572 perm/sec)   p_kst 1.519274e-05   p_cons 4.535147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
KS ci ratio: 4.753661e-01	ci left: 1.174755e-05	ci right 1.925056e-05	k: 67	n:4420000
CDKN2A   4420000 perm   7739 sec   (571 perm/sec)   p_kst 1.515837e-05   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
KS ci ratio: 4.753661e-01	ci left: 1.172103e-05	ci right 1.920710e-05	k: 67	n:4430000
CDKN2A   4430000 perm   7772 sec   (570 perm/sec)   p_kst 1.512415e-05   p_cons 4.514673e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
KS ci ratio: 4.753661e-01	ci left: 1.169463e-05	ci right 1.916384e-05	k: 67	n:4440000
CDKN2A   4440000 perm   7805 sec   (569 perm/sec)   p_kst 1.509009e-05   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
KS ci ratio: 4.753661e-01	ci left: 1.166835e-05	ci right 1.912078e-05	k: 67	n:4450000
CDKN2A   4450000 perm   7838 sec   (568 perm/sec)   p_kst 1.505618e-05   p_cons 4.494382e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
KS ci ratio: 4.753661e-01	ci left: 1.164219e-05	ci right 1.907791e-05	k: 67	n:4460000
CDKN2A   4460000 perm   7871 sec   (567 perm/sec)   p_kst 1.502242e-05   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
KS ci ratio: 4.753662e-01	ci left: 1.161614e-05	ci right 1.903523e-05	k: 67	n:4470000
CDKN2A   4470000 perm   7905 sec   (565 perm/sec)   p_kst 1.498881e-05   p_cons 4.474273e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
KS ci ratio: 4.719089e-01	ci left: 1.178677e-05	ci right 1.924242e-05	k: 68	n:4480000
CDKN2A   4480000 perm   7939 sec   (564 perm/sec)   p_kst 1.517857e-05   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
KS ci ratio: 4.719089e-01	ci left: 1.176052e-05	ci right 1.919956e-05	k: 68	n:4490000
CDKN2A   4490000 perm   7972 sec   (563 perm/sec)   p_kst 1.514477e-05   p_cons 4.454343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
KS ci ratio: 4.685259e-01	ci left: 1.193027e-05	ci right 1.940528e-05	k: 69	n:4500000
CDKN2A   4500000 perm   8006 sec   (562 perm/sec)   p_kst 1.533333e-05   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.263212e+00	ci left: 5.370494e-08	ci right 1.601925e-06	k: 2	n:4510000
KS ci ratio: 4.685259e-01	ci left: 1.190381e-05	ci right 1.936225e-05	k: 69	n:4510000
CDKN2A   4510000 perm   8040 sec   (561 perm/sec)   p_kst 1.529933e-05   p_cons 4.434590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.263212e+00	ci left: 5.358613e-08	ci right 1.598381e-06	k: 2	n:4520000
KS ci ratio: 4.685259e-01	ci left: 1.187748e-05	ci right 1.931941e-05	k: 69	n:4520000
CDKN2A   4520000 perm   8074 sec   (560 perm/sec)   p_kst 1.526549e-05   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.263212e+00	ci left: 5.346784e-08	ci right 1.594853e-06	k: 2	n:4530000
KS ci ratio: 4.685259e-01	ci left: 1.185126e-05	ci right 1.927676e-05	k: 69	n:4530000
CDKN2A   4530000 perm   8107 sec   (559 perm/sec)   p_kst 1.523179e-05   p_cons 4.415011e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.263212e+00	ci left: 5.335007e-08	ci right 1.591340e-06	k: 2	n:4540000
KS ci ratio: 4.652147e-01	ci left: 1.201950e-05	ci right 1.948031e-05	k: 70	n:4540000
CDKN2A   4540000 perm   8141 sec   (558 perm/sec)   p_kst 1.541850e-05   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.263212e+00	ci left: 5.323281e-08	ci right 1.587843e-06	k: 2	n:4550000
KS ci ratio: 4.652147e-01	ci left: 1.199308e-05	ci right 1.943750e-05	k: 70	n:4550000
CDKN2A   4550000 perm   8175 sec   (557 perm/sec)   p_kst 1.538462e-05   p_cons 4.395604e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.263212e+00	ci left: 5.311607e-08	ci right 1.584360e-06	k: 2	n:4560000
KS ci ratio: 4.619727e-01	ci left: 1.216046e-05	ci right 1.963962e-05	k: 71	n:4560000
CDKN2A   4560000 perm   8210 sec   (555 perm/sec)   p_kst 1.557018e-05   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.263212e+00	ci left: 5.299985e-08	ci right 1.580894e-06	k: 2	n:4570000
KS ci ratio: 4.619727e-01	ci left: 1.213385e-05	ci right 1.959664e-05	k: 71	n:4570000
CDKN2A   4570000 perm   8244 sec   (554 perm/sec)   p_kst 1.553611e-05   p_cons 4.376368e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.263212e+00	ci left: 5.288413e-08	ci right 1.577442e-06	k: 2	n:4580000
KS ci ratio: 4.619727e-01	ci left: 1.210735e-05	ci right 1.955386e-05	k: 71	n:4580000
CDKN2A   4580000 perm   8278 sec   (553 perm/sec)   p_kst 1.550218e-05   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.263212e+00	ci left: 5.276891e-08	ci right 1.574005e-06	k: 2	n:4590000
KS ci ratio: 4.619728e-01	ci left: 1.208098e-05	ci right 1.951125e-05	k: 71	n:4590000
CDKN2A   4590000 perm   8312 sec   (552 perm/sec)   p_kst 1.546841e-05   p_cons 4.357298e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.263212e+00	ci left: 5.265420e-08	ci right 1.570583e-06	k: 2	n:4600000
KS ci ratio: 4.619728e-01	ci left: 1.205471e-05	ci right 1.946884e-05	k: 71	n:4600000
CDKN2A   4600000 perm   8346 sec   (551 perm/sec)   p_kst 1.543478e-05   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.263212e+00	ci left: 5.253998e-08	ci right 1.567176e-06	k: 2	n:4610000
KS ci ratio: 4.619728e-01	ci left: 1.202856e-05	ci right 1.942661e-05	k: 71	n:4610000
CDKN2A   4610000 perm   8381 sec   (550 perm/sec)   p_kst 1.540130e-05   p_cons 4.338395e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.263212e+00	ci left: 5.242626e-08	ci right 1.563784e-06	k: 2	n:4620000
KS ci ratio: 4.619728e-01	ci left: 1.200253e-05	ci right 1.938456e-05	k: 71	n:4620000
CDKN2A   4620000 perm   8415 sec   (549 perm/sec)   p_kst 1.536797e-05   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.263212e+00	ci left: 5.231302e-08	ci right 1.560407e-06	k: 2	n:4630000
KS ci ratio: 4.619728e-01	ci left: 1.197660e-05	ci right 1.934269e-05	k: 71	n:4630000
CDKN2A   4630000 perm   8450 sec   (548 perm/sec)   p_kst 1.533477e-05   p_cons 4.319654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.263212e+00	ci left: 5.220028e-08	ci right 1.557044e-06	k: 2	n:4640000
KS ci ratio: 4.619728e-01	ci left: 1.195079e-05	ci right 1.930100e-05	k: 71	n:4640000
CDKN2A   4640000 perm   8484 sec   (547 perm/sec)   p_kst 1.530172e-05   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.263212e+00	ci left: 5.208802e-08	ci right 1.553695e-06	k: 2	n:4650000
KS ci ratio: 4.587976e-01	ci left: 1.211519e-05	ci right 1.949933e-05	k: 72	n:4650000
CDKN2A   4650000 perm   8519 sec   (546 perm/sec)   p_kst 1.548387e-05   p_cons 4.301075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.263212e+00	ci left: 5.197624e-08	ci right 1.550361e-06	k: 2	n:4660000
KS ci ratio: 4.587977e-01	ci left: 1.208920e-05	ci right 1.945749e-05	k: 72	n:4660000
CDKN2A   4660000 perm   8553 sec   (545 perm/sec)   p_kst 1.545064e-05   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.263212e+00	ci left: 5.186495e-08	ci right 1.547041e-06	k: 2	n:4670000
KS ci ratio: 4.587977e-01	ci left: 1.206331e-05	ci right 1.941583e-05	k: 72	n:4670000
CDKN2A   4670000 perm   8588 sec   (544 perm/sec)   p_kst 1.541756e-05   p_cons 4.282655e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.263212e+00	ci left: 5.175412e-08	ci right 1.543736e-06	k: 2	n:4680000
KS ci ratio: 4.526389e-01	ci left: 1.241581e-05	ci right 1.985044e-05	k: 74	n:4680000
CDKN2A   4680000 perm   8623 sec   (543 perm/sec)   p_kst 1.581197e-05   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.263212e+00	ci left: 5.164377e-08	ci right 1.540444e-06	k: 2	n:4690000
KS ci ratio: 4.496511e-01	ci left: 1.257833e-05	ci right 2.004541e-05	k: 75	n:4690000
CDKN2A   4690000 perm   8658 sec   (542 perm/sec)   p_kst 1.599147e-05   p_cons 4.264392e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.263212e+00	ci left: 5.153389e-08	ci right 1.537167e-06	k: 2	n:4700000
KS ci ratio: 4.467218e-01	ci left: 1.274031e-05	ci right 2.023939e-05	k: 76	n:4700000
CDKN2A   4700000 perm   8692 sec   (541 perm/sec)   p_kst 1.617021e-05   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.263212e+00	ci left: 5.142448e-08	ci right 1.533903e-06	k: 2	n:4710000
KS ci ratio: 4.467218e-01	ci left: 1.271326e-05	ci right 2.019642e-05	k: 76	n:4710000
CDKN2A   4710000 perm   8727 sec   (540 perm/sec)   p_kst 1.613588e-05   p_cons 4.246285e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.263212e+00	ci left: 5.131553e-08	ci right 1.530653e-06	k: 2	n:4720000
KS ci ratio: 4.467218e-01	ci left: 1.268632e-05	ci right 2.015363e-05	k: 76	n:4720000
CDKN2A   4720000 perm   8762 sec   (539 perm/sec)   p_kst 1.610169e-05   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.263212e+00	ci left: 5.120704e-08	ci right 1.527417e-06	k: 2	n:4730000
KS ci ratio: 4.438489e-01	ci left: 1.284721e-05	ci right 2.034600e-05	k: 77	n:4730000
CDKN2A   4730000 perm   8797 sec   (538 perm/sec)   p_kst 1.627907e-05   p_cons 4.228330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.263212e+00	ci left: 5.109901e-08	ci right 1.524195e-06	k: 2	n:4740000
KS ci ratio: 4.438489e-01	ci left: 1.282010e-05	ci right 2.030308e-05	k: 77	n:4740000
CDKN2A   4740000 perm   8832 sec   (537 perm/sec)   p_kst 1.624473e-05   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.263212e+00	ci left: 5.099143e-08	ci right 1.520986e-06	k: 2	n:4750000
KS ci ratio: 4.438489e-01	ci left: 1.279311e-05	ci right 2.026034e-05	k: 77	n:4750000
CDKN2A   4750000 perm   8867 sec   (536 perm/sec)   p_kst 1.621053e-05   p_cons 4.210526e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.263212e+00	ci left: 5.088431e-08	ci right 1.517791e-06	k: 2	n:4760000
KS ci ratio: 4.438489e-01	ci left: 1.276624e-05	ci right 2.021777e-05	k: 77	n:4760000
CDKN2A   4760000 perm   8903 sec   (535 perm/sec)   p_kst 1.617647e-05   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.263212e+00	ci left: 5.077763e-08	ci right 1.514609e-06	k: 2	n:4770000
KS ci ratio: 4.438489e-01	ci left: 1.273947e-05	ci right 2.017539e-05	k: 77	n:4770000
CDKN2A   4770000 perm   8939 sec   (534 perm/sec)   p_kst 1.614256e-05   p_cons 4.192872e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.263212e+00	ci left: 5.067140e-08	ci right 1.511440e-06	k: 2	n:4780000
KS ci ratio: 4.438489e-01	ci left: 1.271282e-05	ci right 2.013318e-05	k: 77	n:4780000
CDKN2A   4780000 perm   8976 sec   (533 perm/sec)   p_kst 1.610879e-05   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.263212e+00	ci left: 5.056562e-08	ci right 1.508285e-06	k: 2	n:4790000
KS ci ratio: 4.438489e-01	ci left: 1.268628e-05	ci right 2.009115e-05	k: 77	n:4790000
CDKN2A   4790000 perm   9012 sec   (532 perm/sec)   p_kst 1.607516e-05   p_cons 4.175365e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.263212e+00	ci left: 5.046027e-08	ci right 1.505142e-06	k: 2	n:4800000
KS ci ratio: 4.438489e-01	ci left: 1.265985e-05	ci right 2.004929e-05	k: 77	n:4800000
CDKN2A   4800000 perm   9047 sec   (531 perm/sec)   p_kst 1.604167e-05   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.263212e+00	ci left: 5.035536e-08	ci right 1.502013e-06	k: 2	n:4810000
KS ci ratio: 4.438490e-01	ci left: 1.263353e-05	ci right 2.000761e-05	k: 77	n:4810000
CDKN2A   4810000 perm   9084 sec   (530 perm/sec)   p_kst 1.600832e-05   p_cons 4.158004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.263212e+00	ci left: 5.025089e-08	ci right 1.498897e-06	k: 2	n:4820000
KS ci ratio: 4.438490e-01	ci left: 1.260732e-05	ci right 1.996610e-05	k: 77	n:4820000
CDKN2A   4820000 perm   9120 sec   (529 perm/sec)   p_kst 1.597510e-05   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.263212e+00	ci left: 5.014685e-08	ci right 1.495794e-06	k: 2	n:4830000
KS ci ratio: 4.438490e-01	ci left: 1.258122e-05	ci right 1.992476e-05	k: 77	n:4830000
CDKN2A   4830000 perm   9155 sec   (528 perm/sec)   p_kst 1.594203e-05   p_cons 4.140787e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.263212e+00	ci left: 5.004324e-08	ci right 1.492703e-06	k: 2	n:4840000
KS ci ratio: 4.410308e-01	ci left: 1.273881e-05	ci right 2.011309e-05	k: 78	n:4840000
CDKN2A   4840000 perm   9191 sec   (527 perm/sec)   p_kst 1.611570e-05   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.263212e+00	ci left: 4.994006e-08	ci right 1.489626e-06	k: 2	n:4850000
KS ci ratio: 4.410308e-01	ci left: 1.271255e-05	ci right 2.007162e-05	k: 78	n:4850000
CDKN2A   4850000 perm   9227 sec   (526 perm/sec)   p_kst 1.608247e-05   p_cons 4.123711e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.263212e+00	ci left: 4.983730e-08	ci right 1.486560e-06	k: 2	n:4860000
KS ci ratio: 4.382657e-01	ci left: 1.286937e-05	ci right 2.025872e-05	k: 79	n:4860000
CDKN2A   4860000 perm   9262 sec   (525 perm/sec)   p_kst 1.625514e-05   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.263212e+00	ci left: 4.973497e-08	ci right 1.483508e-06	k: 2	n:4870000
KS ci ratio: 4.382657e-01	ci left: 1.284295e-05	ci right 2.021712e-05	k: 79	n:4870000
CDKN2A   4870000 perm   9298 sec   (524 perm/sec)   p_kst 1.622177e-05   p_cons 4.106776e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.263212e+00	ci left: 4.963305e-08	ci right 1.480468e-06	k: 2	n:4880000
KS ci ratio: 4.382657e-01	ci left: 1.281663e-05	ci right 2.017569e-05	k: 79	n:4880000
CDKN2A   4880000 perm   9335 sec   (523 perm/sec)   p_kst 1.618852e-05   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.263212e+00	ci left: 4.953155e-08	ci right 1.477440e-06	k: 2	n:4890000
KS ci ratio: 4.382657e-01	ci left: 1.279042e-05	ci right 2.013443e-05	k: 79	n:4890000
CDKN2A   4890000 perm   9371 sec   (522 perm/sec)   p_kst 1.615542e-05   p_cons 4.089980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.263212e+00	ci left: 4.943047e-08	ci right 1.474425e-06	k: 2	n:4900000
KS ci ratio: 4.355519e-01	ci left: 1.294594e-05	ci right 2.031974e-05	k: 80	n:4900000
CDKN2A   4900000 perm   9408 sec   (521 perm/sec)   p_kst 1.632653e-05   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.263212e+00	ci left: 4.932980e-08	ci right 1.471422e-06	k: 2	n:4910000
KS ci ratio: 4.355519e-01	ci left: 1.291958e-05	ci right 2.027836e-05	k: 80	n:4910000
CDKN2A   4910000 perm   9444 sec   (520 perm/sec)   p_kst 1.629328e-05   p_cons 4.073320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.263212e+00	ci left: 4.922953e-08	ci right 1.468432e-06	k: 2	n:4920000
KS ci ratio: 4.355519e-01	ci left: 1.289332e-05	ci right 2.023714e-05	k: 80	n:4920000
CDKN2A   4920000 perm   9481 sec   (519 perm/sec)   p_kst 1.626016e-05   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.263212e+00	ci left: 4.912967e-08	ci right 1.465453e-06	k: 2	n:4930000
KS ci ratio: 4.328879e-01	ci left: 1.304783e-05	ci right 2.042097e-05	k: 81	n:4930000
CDKN2A   4930000 perm   9518 sec   (518 perm/sec)   p_kst 1.643002e-05   p_cons 4.056795e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.263212e+00	ci left: 4.903022e-08	ci right 1.462487e-06	k: 2	n:4940000
KS ci ratio: 4.328879e-01	ci left: 1.302142e-05	ci right 2.037964e-05	k: 81	n:4940000
CDKN2A   4940000 perm   9554 sec   (517 perm/sec)   p_kst 1.639676e-05   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.263212e+00	ci left: 4.893117e-08	ci right 1.459532e-06	k: 2	n:4950000
KS ci ratio: 4.328880e-01	ci left: 1.299511e-05	ci right 2.033847e-05	k: 81	n:4950000
CDKN2A   4950000 perm   9591 sec   (516 perm/sec)   p_kst 1.636364e-05   p_cons 4.040404e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.263212e+00	ci left: 4.883252e-08	ci right 1.456589e-06	k: 2	n:4960000
KS ci ratio: 4.328880e-01	ci left: 1.296891e-05	ci right 2.029746e-05	k: 81	n:4960000
CDKN2A   4960000 perm   9628 sec   (515 perm/sec)   p_kst 1.633065e-05   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.263212e+00	ci left: 4.873426e-08	ci right 1.453659e-06	k: 2	n:4970000
KS ci ratio: 4.328880e-01	ci left: 1.294282e-05	ci right 2.025662e-05	k: 81	n:4970000
CDKN2A   4970000 perm   9665 sec   (514 perm/sec)   p_kst 1.629779e-05   p_cons 4.024145e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.263212e+00	ci left: 4.863640e-08	ci right 1.450740e-06	k: 2	n:4980000
KS ci ratio: 4.328880e-01	ci left: 1.291683e-05	ci right 2.021594e-05	k: 81	n:4980000
CDKN2A   4980000 perm   9702 sec   (513 perm/sec)   p_kst 1.626506e-05   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.263212e+00	ci left: 4.853894e-08	ci right 1.447832e-06	k: 2	n:4990000
KS ci ratio: 4.328880e-01	ci left: 1.289094e-05	ci right 2.017543e-05	k: 81	n:4990000
CDKN2A   4990000 perm   9740 sec   (512 perm/sec)   p_kst 1.623246e-05   p_cons 4.008016e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.263212e+00	ci left: 4.844186e-08	ci right 1.444937e-06	k: 2	n:5000000
KS ci ratio: 4.328880e-01	ci left: 1.286516e-05	ci right 2.013508e-05	k: 81	n:5000000
CDKN2A   5000000 perm   9777 sec   (511 perm/sec)   p_kst 1.620000e-05   p_cons 4.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000035/CDKN2A.14_1004_5000000_1.62e-05_4e-07_0.png
                gene_name: CDKN2A
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 1.62e-05 
        ci_ks_bounds_left: 1.29e-05 
       ci_ks_bounds_right: 2.01e-05 
                   p_cons: 4.00e-07 
      ci_cons_bounds_left: 4.84e-08 
     ci_cons_bounds_right: 1.44e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 10 percent done.
CDHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
CDHR1   10000 perm   2 sec   (5550 perm/sec)   p_kst 7.820000e-02   p_cons 2.948000e-01   p_joint 1.132000e-01

Joint ci ratio: 6.438674e-02	ci left: 1.512925e-01	ci right 1.614077e-01	k: 3126	n:20000
Cons ci ratio: 4.282961e-02	ci left: 2.888339e-01	ci right 3.015257e-01	k: 5903	n:20000
KS ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
CDHR1   20000 perm   4 sec   (5052 perm/sec)   p_kst 7.970000e-02   p_cons 2.951500e-01   p_joint 1.563000e-01

Outputting figure to mutsig2_images.part000000000035/CDHR1.12_2850_20000_0.0797_0.29515_0.1563.png
                gene_name: CDHR1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 12 percent done.
CDH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
Cons ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
KS ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
CDH4   10000 perm   2 sec   (5734 perm/sec)   p_kst 5.164000e-01   p_cons 2.734000e-01   p_joint 3.268000e-01

Outputting figure to mutsig2_images.part000000000035/CDH4.9_2815_10000_0.5164_0.2734_0.3268.png
                gene_name: CDH4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 13 percent done.
CDHR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
Cons ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
KS ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
CDHR3   10000 perm   2 sec   (6020 perm/sec)   p_kst 3.220000e-02   p_cons 5.205000e-01   p_joint 5.510000e-02

Joint ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
Cons ci ratio: 2.542219e-02	ci left: 5.361654e-01	ci right 5.500220e-01	k: 10862	n:20000
KS ci ratio: 1.525718e-01	ci left: 2.950774e-02	ci right 3.442957e-02	k: 638	n:20000
CDHR3   20000 perm   4 sec   (5405 perm/sec)   p_kst 3.190000e-02   p_cons 5.431000e-01   p_joint 1.012500e-01

Joint ci ratio: 6.989320e-02	ci left: 9.157345e-02	ci right 9.823857e-02	k: 2846	n:30000
Cons ci ratio: 2.083578e-02	ci left: 5.355742e-01	ci right 5.468844e-01	k: 16237	n:30000
KS ci ratio: 1.223194e-01	ci left: 3.107192e-02	ci right 3.515248e-02	k: 992	n:30000
CDHR3   30000 perm   6 sec   (5182 perm/sec)   p_kst 3.306667e-02   p_cons 5.412333e-01   p_joint 9.486667e-02

Joint ci ratio: 8.426466e-02	ci left: 4.915821e-02	ci right 5.350722e-02	k: 2052	n:40000
Cons ci ratio: 1.873726e-02	ci left: 5.175661e-01	ci right 5.273807e-01	k: 20899	n:40000
KS ci ratio: 1.072803e-01	ci left: 3.056460e-02	ci right 3.405373e-02	k: 1291	n:40000
CDHR3   40000 perm   8 sec   (5038 perm/sec)   p_kst 3.227500e-02   p_cons 5.224750e-01   p_joint 5.130000e-02

Joint ci ratio: 7.538813e-02	ci left: 4.936276e-02	ci right 5.324954e-02	k: 2564	n:50000
Cons ci ratio: 1.671546e-02	ci left: 5.193911e-01	ci right 5.281662e-01	k: 26189	n:50000
KS ci ratio: 9.676250e-02	ci left: 3.024016e-02	ci right 3.333452e-02	k: 1588	n:50000
CDHR3   50000 perm   10 sec   (4920 perm/sec)   p_kst 3.176000e-02   p_cons 5.237800e-01   p_joint 5.128000e-02

Outputting figure to mutsig2_images.part000000000035/CDHR3.9_2734_50000_0.03176_0.52378_0.05128.png
                gene_name: CDHR3
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 15 percent done.
CDK5RAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
Cons ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
KS ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
CDK5RAP2   10000 perm   2 sec   (5160 perm/sec)   p_kst 5.391000e-01   p_cons 3.197000e-01   p_joint 4.838000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP2.9_5834_10000_0.5391_0.3197_0.4838.png
                gene_name: CDK5RAP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 17 percent done.
CDHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
Cons ci ratio: 4.305088e-02	ci left: 4.434080e-01	ci right 4.630192e-01	k: 4532	n:10000
KS ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
CDHR2   10000 perm   2 sec   (5141 perm/sec)   p_kst 9.336000e-01   p_cons 4.532000e-01   p_joint 7.705000e-01

Outputting figure to mutsig2_images.part000000000035/CDHR2.8_4057_10000_0.9336_0.4532_0.7705.png
                gene_name: CDHR2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 19 percent done.
CDH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
Cons ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
KS ci ratio: 7.056164e-03	ci left: 9.650977e-01	ci right 9.720258e-01	k: 9687	n:10000
CDH5   10000 perm   2 sec   (6417 perm/sec)   p_kst 9.687000e-01   p_cons 2.300000e-01   p_joint 6.238000e-01

Outputting figure to mutsig2_images.part000000000035/CDH5.7_2399_10000_0.9687_0.23_0.6238.png
                gene_name: CDH5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 21 percent done.
CDK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
Cons ci ratio: 3.455982e-02	ci left: 5.528102e-01	ci right 5.723533e-01	k: 5626	n:10000
KS ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
CDK12   10000 perm   2 sec   (5282 perm/sec)   p_kst 7.407000e-01   p_cons 5.626000e-01   p_joint 8.906000e-01

Outputting figure to mutsig2_images.part000000000035/CDK12.7_4529_10000_0.7407_0.5626_0.8906.png
                gene_name: CDK12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 23 percent done.
CDK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
KS ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
CDK13   10000 perm   2 sec   (5279 perm/sec)   p_kst 2.200000e-02   p_cons 6.600000e-03   p_joint 9.900000e-03

Joint ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
Cons ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
CDK13   20000 perm   4 sec   (4781 perm/sec)   p_kst 2.060000e-02   p_cons 6.600000e-03   p_joint 4.850000e-03

Joint ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
Cons ci ratio: 2.762558e-01	ci left: 5.746141e-03	ci right 7.617986e-03	k: 199	n:30000
KS ci ratio: 1.607620e-01	ci left: 1.786925e-02	ci right 2.102478e-02	k: 582	n:30000
CDK13   30000 perm   7 sec   (4598 perm/sec)   p_kst 1.940000e-02   p_cons 6.633333e-03   p_joint 3.800000e-03

Joint ci ratio: 3.194620e-01	ci left: 3.151775e-03	ci right 4.372012e-03	k: 149	n:40000
Cons ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
KS ci ratio: 1.408343e-01	ci left: 1.766045e-02	ci right 2.036002e-02	k: 759	n:40000
CDK13   40000 perm   9 sec   (4489 perm/sec)   p_kst 1.897500e-02   p_cons 6.650000e-03   p_joint 3.725000e-03

Joint ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
Cons ci ratio: 1.869118e-01	ci left: 7.904622e-03	ci right 9.553176e-03	k: 435	n:50000
KS ci ratio: 1.259664e-01	ci left: 1.780194e-02	ci right 2.021437e-02	k: 949	n:50000
CDK13   50000 perm   11 sec   (4394 perm/sec)   p_kst 1.898000e-02   p_cons 8.700000e-03   p_joint 2.900000e-03

Joint ci ratio: 3.345229e-01	ci left: 1.902072e-03	ci right 2.680657e-03	k: 136	n:60000
Cons ci ratio: 1.693577e-01	ci left: 8.100132e-03	ci right 9.614615e-03	k: 530	n:60000
KS ci ratio: 1.148373e-01	ci left: 1.795497e-02	ci right 2.015857e-02	k: 1142	n:60000
CDK13   60000 perm   14 sec   (4315 perm/sec)   p_kst 1.903333e-02   p_cons 8.833333e-03   p_joint 2.266667e-03

Joint ci ratio: 3.769084e-01	ci left: 1.252865e-03	ci right 1.846828e-03	k: 107	n:70000
Cons ci ratio: 1.559715e-01	ci left: 8.244988e-03	ci right 9.653312e-03	k: 625	n:70000
KS ci ratio: 1.062985e-01	ci left: 1.804320e-02	ci right 2.008266e-02	k: 1333	n:70000
CDK13   70000 perm   17 sec   (4240 perm/sec)   p_kst 1.904286e-02   p_cons 8.928571e-03   p_joint 1.528571e-03

Joint ci ratio: 1.916923e-01	ci left: 4.701466e-03	ci right 5.709929e-03	k: 415	n:80000
Cons ci ratio: 1.450240e-01	ci left: 8.393326e-03	ci right 9.717645e-03	k: 723	n:80000
KS ci ratio: 9.968584e-02	ci left: 1.801640e-02	ci right 1.991872e-02	k: 1516	n:80000
CDK13   80000 perm   19 sec   (4171 perm/sec)   p_kst 1.895000e-02   p_cons 9.037500e-03   p_joint 5.187500e-03

Joint ci ratio: 1.885860e-01	ci left: 4.327151e-03	ci right 5.238552e-03	k: 429	n:90000
Cons ci ratio: 1.358492e-01	ci left: 8.543600e-03	ci right 9.799453e-03	k: 824	n:90000
KS ci ratio: 9.445481e-02	ci left: 1.789009e-02	ci right 1.967445e-02	k: 1689	n:90000
CDK13   90000 perm   22 sec   (4106 perm/sec)   p_kst 1.876667e-02   p_cons 9.155556e-03   p_joint 4.766667e-03

Joint ci ratio: 1.913314e-01	ci left: 3.780038e-03	ci right 4.589136e-03	k: 417	n:100000
Cons ci ratio: 1.296413e-01	ci left: 8.472328e-03	ci right 9.656411e-03	k: 905	n:100000
KS ci ratio: 8.977301e-02	ci left: 1.786939e-02	ci right 1.955869e-02	k: 1870	n:100000
CDK13   100000 perm   25 sec   (4042 perm/sec)   p_kst 1.870000e-02   p_cons 9.050000e-03   p_joint 4.170000e-03

Joint ci ratio: 1.920610e-01	ci left: 3.410371e-03	ci right 4.143448e-03	k: 414	n:110000
Cons ci ratio: 1.232096e-01	ci left: 8.556079e-03	ci right 9.688211e-03	k: 1002	n:110000
KS ci ratio: 8.593842e-02	ci left: 1.776525e-02	ci right 1.936937e-02	k: 2041	n:110000
CDK13   110000 perm   28 sec   (3980 perm/sec)   p_kst 1.855455e-02   p_cons 9.109091e-03   p_joint 3.763636e-03

Joint ci ratio: 1.889200e-01	ci left: 3.237248e-03	ci right 3.920422e-03	k: 428	n:120000
Cons ci ratio: 1.176490e-01	ci left: 8.627080e-03	ci right 9.713505e-03	k: 1099	n:120000
KS ci ratio: 8.212286e-02	ci left: 1.786755e-02	ci right 1.940584e-02	k: 2235	n:120000
CDK13   120000 perm   31 sec   (3923 perm/sec)   p_kst 1.862500e-02   p_cons 9.158333e-03   p_joint 3.566667e-03

Joint ci ratio: 1.932887e-01	ci left: 2.849011e-03	ci right 3.465789e-03	k: 409	n:130000
Cons ci ratio: 1.134023e-01	ci left: 8.590934e-03	ci right 9.631140e-03	k: 1183	n:130000
KS ci ratio: 7.885690e-02	ci left: 1.791773e-02	ci right 1.939616e-02	k: 2424	n:130000
CDK13   130000 perm   34 sec   (3868 perm/sec)   p_kst 1.864615e-02   p_cons 9.100000e-03   p_joint 3.146154e-03

Joint ci ratio: 1.887480e-01	ci left: 2.781526e-03	ci right 3.367926e-03	k: 429	n:140000
Cons ci ratio: 1.095409e-01	ci left: 8.567506e-03	ci right 9.567272e-03	k: 1268	n:140000
KS ci ratio: 7.580434e-02	ci left: 1.803187e-02	ci right 1.945959e-02	k: 2623	n:140000
CDK13   140000 perm   37 sec   (3813 perm/sec)   p_kst 1.873571e-02   p_cons 9.057143e-03   p_joint 3.064286e-03

Joint ci ratio: 1.935664e-01	ci left: 2.462750e-03	ci right 2.996760e-03	k: 408	n:150000
Cons ci ratio: 1.054222e-01	ci left: 8.651593e-03	ci right 9.620856e-03	k: 1369	n:150000
KS ci ratio: 7.298867e-02	ci left: 1.817758e-02	ci right 1.956110e-02	k: 2829	n:150000
CDK13   150000 perm   40 sec   (3761 perm/sec)   p_kst 1.886000e-02   p_cons 9.126667e-03   p_joint 2.720000e-03

Joint ci ratio: 2.099048e-01	ci left: 1.946748e-03	ci right 2.409087e-03	k: 347	n:160000
Cons ci ratio: 1.023341e-01	ci left: 8.622223e-03	ci right 9.558196e-03	k: 1453	n:160000
KS ci ratio: 7.070283e-02	ci left: 1.818310e-02	ci right 1.952192e-02	k: 3015	n:160000
CDK13   160000 perm   43 sec   (3705 perm/sec)   p_kst 1.884375e-02   p_cons 9.081250e-03   p_joint 2.168750e-03

Joint ci ratio: 2.046804e-01	ci left: 1.932619e-03	ci right 2.378749e-03	k: 365	n:170000
Cons ci ratio: 9.979739e-02	ci left: 8.545041e-03	ci right 9.448294e-03	k: 1528	n:170000
KS ci ratio: 6.876152e-02	ci left: 1.811338e-02	ci right 1.940898e-02	k: 3188	n:170000
CDK13   170000 perm   47 sec   (3650 perm/sec)   p_kst 1.875294e-02   p_cons 8.988235e-03   p_joint 2.147059e-03

Joint ci ratio: 1.980269e-01	ci left: 1.957142e-03	ci right 2.392474e-03	k: 390	n:180000
Cons ci ratio: 9.680303e-02	ci left: 8.590548e-03	ci right 9.469819e-03	k: 1624	n:180000
KS ci ratio: 6.658931e-02	ci left: 1.825951e-02	ci right 1.952271e-02	k: 3399	n:180000
CDK13   180000 perm   50 sec   (3599 perm/sec)   p_kst 1.888333e-02   p_cons 9.022222e-03   p_joint 2.166667e-03

Joint ci ratio: 1.945781e-01	ci left: 1.924194e-03	ci right 2.343860e-03	k: 404	n:190000
Cons ci ratio: 9.398034e-02	ci left: 8.647048e-03	ci right 9.504873e-03	k: 1723	n:190000
KS ci ratio: 6.490449e-02	ci left: 1.822509e-02	ci right 1.945281e-02	k: 3578	n:190000
CDK13   190000 perm   54 sec   (3549 perm/sec)   p_kst 1.883158e-02   p_cons 9.068421e-03   p_joint 2.126316e-03

Joint ci ratio: 1.933960e-01	ci left: 1.851763e-03	ci right 2.252889e-03	k: 409	n:200000
Cons ci ratio: 9.164498e-02	ci left: 8.649367e-03	ci right 9.484956e-03	k: 1812	n:200000
KS ci ratio: 6.334998e-02	ci left: 1.818955e-02	ci right 1.938445e-02	k: 3756	n:200000
CDK13   200000 perm   57 sec   (3502 perm/sec)   p_kst 1.878000e-02   p_cons 9.060000e-03   p_joint 2.045000e-03

Joint ci ratio: 1.924670e-01	ci left: 1.781705e-03	ci right 2.165584e-03	k: 413	n:210000
Cons ci ratio: 8.949924e-02	ci left: 8.647047e-03	ci right 9.461829e-03	k: 1900	n:210000
KS ci ratio: 6.174236e-02	ci left: 1.825151e-02	ci right 1.941896e-02	k: 3954	n:210000
CDK13   210000 perm   61 sec   (3456 perm/sec)   p_kst 1.882857e-02   p_cons 9.047619e-03   p_joint 1.966667e-03

Joint ci ratio: 1.960670e-01	ci left: 1.635840e-03	ci right 1.995671e-03	k: 398	n:220000
Cons ci ratio: 8.751969e-02	ci left: 8.640700e-03	ci right 9.435953e-03	k: 1987	n:220000
KS ci ratio: 6.020690e-02	ci left: 1.833506e-02	ci right 1.947767e-02	k: 4158	n:220000
CDK13   220000 perm   64 sec   (3412 perm/sec)   p_kst 1.890000e-02   p_cons 9.031818e-03   p_joint 1.809091e-03

Joint ci ratio: 1.998742e-01	ci left: 1.502721e-03	ci right 1.840471e-03	k: 383	n:230000
Cons ci ratio: 8.593800e-02	ci left: 8.579766e-03	ci right 9.354424e-03	k: 2061	n:230000
KS ci ratio: 5.881493e-02	ci left: 1.839024e-02	ci right 1.950889e-02	k: 4357	n:230000
CDK13   230000 perm   68 sec   (3369 perm/sec)   p_kst 1.894348e-02   p_cons 8.960870e-03   p_joint 1.665217e-03

Joint ci ratio: 1.983352e-01	ci left: 1.463858e-03	ci right 1.790034e-03	k: 389	n:240000
Cons ci ratio: 8.378842e-02	ci left: 8.658662e-03	ci right 9.419933e-03	k: 2168	n:240000
KS ci ratio: 5.768321e-02	ci left: 1.833429e-02	ci right 1.942737e-02	k: 4530	n:240000
CDK13   240000 perm   72 sec   (3328 perm/sec)   p_kst 1.887500e-02   p_cons 9.033333e-03   p_joint 1.620833e-03

Joint ci ratio: 1.965825e-01	ci left: 1.431917e-03	ci right 1.747818e-03	k: 396	n:250000
Cons ci ratio: 8.212078e-02	ci left: 8.660931e-03	ci right 9.406519e-03	k: 2257	n:250000
KS ci ratio: 5.648602e-02	ci left: 1.836585e-02	ci right 1.943734e-02	k: 4724	n:250000
CDK13   250000 perm   76 sec   (3290 perm/sec)   p_kst 1.889600e-02   p_cons 9.028000e-03   p_joint 1.584000e-03

Joint ci ratio: 1.946342e-01	ci left: 1.406104e-03	ci right 1.712871e-03	k: 404	n:260000
Cons ci ratio: 8.053159e-02	ci left: 8.666933e-03	ci right 9.397921e-03	k: 2347	n:260000
KS ci ratio: 5.528027e-02	ci left: 1.844832e-02	ci right 1.950091e-02	k: 4932	n:260000
CDK13   260000 perm   80 sec   (3252 perm/sec)   p_kst 1.896923e-02   p_cons 9.026923e-03   p_joint 1.553846e-03

Joint ci ratio: 1.929768e-01	ci left: 1.378692e-03	ci right 1.676616e-03	k: 411	n:270000
Cons ci ratio: 7.911314e-02	ci left: 8.654463e-03	ci right 9.370950e-03	k: 2432	n:270000
KS ci ratio: 5.437000e-02	ci left: 1.837507e-02	ci right 1.940567e-02	k: 5099	n:270000
CDK13   270000 perm   84 sec   (3216 perm/sec)   p_kst 1.888519e-02   p_cons 9.007407e-03   p_joint 1.522222e-03

Joint ci ratio: 1.951282e-01	ci left: 1.298867e-03	ci right 1.583042e-03	k: 402	n:280000
Cons ci ratio: 7.762722e-02	ci left: 8.674514e-03	ci right 9.378562e-03	k: 2526	n:280000
KS ci ratio: 5.395921e-02	ci left: 1.800056e-02	ci right 1.900229e-02	k: 5179	n:280000
CDK13   280000 perm   88 sec   (3181 perm/sec)   p_kst 1.849643e-02   p_cons 9.021429e-03   p_joint 1.435714e-03

Joint ci ratio: 1.911375e-01	ci left: 1.309865e-03	ci right 1.589905e-03	k: 419	n:290000
Cons ci ratio: 7.616337e-02	ci left: 8.706831e-03	ci right 9.399586e-03	k: 2624	n:290000
KS ci ratio: 5.295038e-02	ci left: 1.805690e-02	ci right 1.904241e-02	k: 5378	n:290000
CDK13   290000 perm   92 sec   (3147 perm/sec)   p_kst 1.854483e-02   p_cons 9.048276e-03   p_joint 1.444828e-03

Joint ci ratio: 1.884649e-01	ci left: 1.304302e-03	ci right 1.578807e-03	k: 431	n:300000
Cons ci ratio: 7.496011e-02	ci left: 8.694580e-03	ci right 9.374955e-03	k: 2709	n:300000
KS ci ratio: 5.205793e-02	ci left: 1.806687e-02	ci right 1.903580e-02	k: 5564	n:300000
CDK13   300000 perm   96 sec   (3112 perm/sec)   p_kst 1.854667e-02   p_cons 9.030000e-03   p_joint 1.436667e-03

Joint ci ratio: 1.978644e-01	ci left: 1.139422e-03	ci right 1.392630e-03	k: 391	n:310000
Cons ci ratio: 7.375889e-02	ci left: 8.695868e-03	ci right 9.364971e-03	k: 2798	n:310000
KS ci ratio: 5.116383e-02	ci left: 1.810817e-02	ci right 1.906215e-02	k: 5760	n:310000
CDK13   310000 perm   101 sec   (3077 perm/sec)   p_kst 1.858065e-02   p_cons 9.025806e-03   p_joint 1.261290e-03

Joint ci ratio: 2.061991e-01	ci left: 1.011832e-03	ci right 1.247352e-03	k: 360	n:320000
Cons ci ratio: 7.272807e-02	ci left: 8.669539e-03	ci right 9.326899e-03	k: 2878	n:320000
KS ci ratio: 5.030137e-02	ci left: 1.815629e-02	ci right 1.909621e-02	k: 5959	n:320000
CDK13   320000 perm   105 sec   (3043 perm/sec)   p_kst 1.862187e-02   p_cons 8.993750e-03   p_joint 1.125000e-03

Joint ci ratio: 2.039526e-01	ci left: 1.004167e-03	ci right 1.235040e-03	k: 368	n:330000
Cons ci ratio: 7.138714e-02	ci left: 8.731187e-03	ci right 9.380509e-03	k: 2987	n:330000
KS ci ratio: 4.950977e-02	ci left: 1.818066e-02	ci right 1.910661e-02	k: 6151	n:330000
CDK13   330000 perm   110 sec   (3010 perm/sec)   p_kst 1.863939e-02   p_cons 9.051515e-03   p_joint 1.115152e-03

Joint ci ratio: 2.085319e-01	ci left: 9.300004e-04	ci right 1.149235e-03	k: 352	n:340000
Cons ci ratio: 7.020930e-02	ci left: 8.766192e-03	ci right 9.406923e-03	k: 3088	n:340000
KS ci ratio: 4.877008e-02	ci left: 1.819209e-02	ci right 1.910438e-02	k: 6339	n:340000
CDK13   340000 perm   114 sec   (2978 perm/sec)   p_kst 1.864412e-02   p_cons 9.082353e-03   p_joint 1.035294e-03

Joint ci ratio: 2.062091e-01	ci left: 9.250989e-04	ci right 1.140443e-03	k: 360	n:350000
Cons ci ratio: 6.932956e-02	ci left: 8.737501e-03	ci right 9.367810e-03	k: 3167	n:350000
KS ci ratio: 4.804008e-02	ci left: 1.821990e-02	ci right 1.911953e-02	k: 6533	n:350000
CDK13   350000 perm   119 sec   (2948 perm/sec)   p_kst 1.866571e-02   p_cons 9.048571e-03   p_joint 1.028571e-03

Joint ci ratio: 2.039622e-01	ci left: 9.204825e-04	ci right 1.132126e-03	k: 368	n:360000
Cons ci ratio: 6.824914e-02	ci left: 8.770527e-03	ci right 9.392969e-03	k: 3268	n:360000
KS ci ratio: 4.741018e-02	ci left: 1.819409e-02	ci right 1.908035e-02	k: 6708	n:360000
CDK13   360000 perm   123 sec   (2918 perm/sec)   p_kst 1.863333e-02   p_cons 9.077778e-03   p_joint 1.022222e-03

Joint ci ratio: 2.042422e-01	ci left: 8.930387e-04	ci right 1.098689e-03	k: 367	n:370000
Cons ci ratio: 6.736918e-02	ci left: 8.761976e-03	ci right 9.375479e-03	k: 3354	n:370000
KS ci ratio: 4.670084e-02	ci left: 1.824991e-02	ci right 1.912522e-02	k: 6913	n:370000
CDK13   370000 perm   128 sec   (2887 perm/sec)   p_kst 1.868378e-02   p_cons 9.064865e-03   p_joint 9.918919e-04

Joint ci ratio: 2.009909e-01	ci left: 8.995149e-04	ci right 1.102955e-03	k: 379	n:380000
Cons ci ratio: 6.634750e-02	ci left: 8.800512e-03	ci right 9.407009e-03	k: 3458	n:380000
KS ci ratio: 4.609505e-02	ci left: 1.824564e-02	ci right 1.910909e-02	k: 7096	n:380000
CDK13   380000 perm   133 sec   (2858 perm/sec)   p_kst 1.867368e-02   p_cons 9.100000e-03   p_joint 9.973684e-04

Joint ci ratio: 2.034192e-01	ci left: 8.545398e-04	ci right 1.050433e-03	k: 370	n:390000
Cons ci ratio: 6.566919e-02	ci left: 8.756419e-03	ci right 9.353473e-03	k: 3530	n:390000
KS ci ratio: 4.548995e-02	ci left: 1.825940e-02	ci right 1.911187e-02	k: 7286	n:390000
CDK13   390000 perm   138 sec   (2829 perm/sec)   p_kst 1.868205e-02   p_cons 9.051282e-03   p_joint 9.487179e-04

Joint ci ratio: 2.017949e-01	ci left: 8.474150e-04	ci right 1.039932e-03	k: 376	n:400000
Cons ci ratio: 6.485704e-02	ci left: 8.756378e-03	ci right 9.345767e-03	k: 3619	n:400000
KS ci ratio: 4.488972e-02	ci left: 1.828739e-02	ci right 1.912961e-02	k: 7482	n:400000
CDK13   400000 perm   143 sec   (2801 perm/sec)   p_kst 1.870500e-02   p_cons 9.047500e-03   p_joint 9.400000e-04

Joint ci ratio: 2.091443e-01	ci left: 7.665900e-04	ci right 9.479009e-04	k: 350	n:410000
Cons ci ratio: 6.396994e-02	ci left: 8.785185e-03	ci right 9.368126e-03	k: 3720	n:410000
KS ci ratio: 4.430676e-02	ci left: 1.831890e-02	ci right 1.915134e-02	k: 7680	n:410000
CDK13   410000 perm   148 sec   (2773 perm/sec)   p_kst 1.873171e-02   p_cons 9.073171e-03   p_joint 8.536585e-04

Joint ci ratio: 2.076713e-01	ci left: 7.596210e-04	ci right 9.378574e-04	k: 355	n:420000
Cons ci ratio: 6.318505e-02	ci left: 8.793924e-03	ci right 9.370023e-03	k: 3813	n:420000
KS ci ratio: 4.374877e-02	ci left: 1.834663e-02	ci right 1.916956e-02	k: 7877	n:420000
CDK13   420000 perm   153 sec   (2747 perm/sec)   p_kst 1.875476e-02   p_cons 9.078571e-03   p_joint 8.452381e-04

Joint ci ratio: 1.432045e-01	ci left: 1.614946e-03	ci right 1.866263e-03	k: 747	n:430000
Cons ci ratio: 6.247678e-02	ci left: 8.788560e-03	ci right 9.357620e-03	k: 3900	n:430000
KS ci ratio: 4.321134e-02	ci left: 1.837312e-02	ci right 1.918687e-02	k: 8074	n:430000
CDK13   430000 perm   158 sec   (2721 perm/sec)   p_kst 1.877674e-02   p_cons 9.069767e-03   p_joint 1.737209e-03

Joint ci ratio: 1.548387e-01	ci left: 1.341911e-03	ci right 1.569280e-03	k: 639	n:440000
Cons ci ratio: 6.166709e-02	ci left: 8.819281e-03	ci right 9.382666e-03	k: 4003	n:440000
KS ci ratio: 4.269324e-02	ci left: 1.839848e-02	ci right 1.920333e-02	k: 8271	n:440000
CDK13   440000 perm   163 sec   (2695 perm/sec)   p_kst 1.879773e-02   p_cons 9.097727e-03   p_joint 1.452273e-03

Joint ci ratio: 1.547202e-01	ci left: 1.314226e-03	ci right 1.536718e-03	k: 640	n:450000
Cons ci ratio: 6.114402e-02	ci left: 8.774270e-03	ci right 9.329857e-03	k: 4072	n:450000
KS ci ratio: 4.219588e-02	ci left: 1.842056e-02	ci right 1.921677e-02	k: 8467	n:450000
CDK13   450000 perm   169 sec   (2669 perm/sec)   p_kst 1.881556e-02   p_cons 9.048889e-03   p_joint 1.422222e-03

Joint ci ratio: 1.566933e-01	ci left: 1.252225e-03	ci right 1.467178e-03	k: 624	n:460000
Cons ci ratio: 6.061188e-02	ci left: 8.737659e-03	ci right 9.285943e-03	k: 4144	n:460000
KS ci ratio: 4.168854e-02	ci left: 1.846540e-02	ci right 1.925372e-02	k: 8674	n:460000
CDK13   460000 perm   174 sec   (2644 perm/sec)   p_kst 1.885652e-02   p_cons 9.008696e-03   p_joint 1.356522e-03

Joint ci ratio: 1.536485e-01	ci left: 1.276709e-03	ci right 1.491215e-03	k: 649	n:470000
Cons ci ratio: 6.002162e-02	ci left: 8.723586e-03	ci right 9.265471e-03	k: 4226	n:470000
KS ci ratio: 4.120616e-02	ci left: 1.850207e-02	ci right 1.928260e-02	k: 8878	n:470000
CDK13   470000 perm   179 sec   (2618 perm/sec)   p_kst 1.888936e-02   p_cons 8.991489e-03   p_joint 1.380851e-03

Joint ci ratio: 1.517913e-01	ci left: 1.282171e-03	ci right 1.494754e-03	k: 665	n:480000
Cons ci ratio: 5.934413e-02	ci left: 8.740915e-03	ci right 9.277537e-03	k: 4323	n:480000
KS ci ratio: 4.076073e-02	ci left: 1.851870e-02	ci right 1.929129e-02	k: 9073	n:480000
CDK13   480000 perm   185 sec   (2594 perm/sec)   p_kst 1.890208e-02   p_cons 9.006250e-03   p_joint 1.385417e-03

Joint ci ratio: 1.508887e-01	ci left: 1.271712e-03	ci right 1.481194e-03	k: 673	n:490000
Cons ci ratio: 5.877634e-02	ci left: 8.731424e-03	ci right 9.262161e-03	k: 4407	n:490000
KS ci ratio: 4.031614e-02	ci left: 1.854682e-02	ci right 1.931194e-02	k: 9274	n:490000
CDK13   490000 perm   191 sec   (2570 perm/sec)   p_kst 1.892653e-02   p_cons 8.993878e-03   p_joint 1.373469e-03

Joint ci ratio: 1.490206e-01	ci left: 1.279002e-03	ci right 1.486844e-03	k: 690	n:500000
Cons ci ratio: 5.825727e-02	ci left: 8.712481e-03	ci right 9.237232e-03	k: 4486	n:500000
KS ci ratio: 3.991801e-02	ci left: 1.854415e-02	ci right 1.930144e-02	k: 9460	n:500000
CDK13   500000 perm   196 sec   (2545 perm/sec)   p_kst 1.892000e-02   p_cons 8.972000e-03   p_joint 1.380000e-03

Joint ci ratio: 1.479544e-01	ci left: 1.272803e-03	ci right 1.478027e-03	k: 700	n:510000
Cons ci ratio: 5.779643e-02	ci left: 8.680772e-03	ci right 9.199339e-03	k: 4558	n:510000
KS ci ratio: 3.951058e-02	ci left: 1.856104e-02	ci right 1.931111e-02	k: 9656	n:510000
CDK13   510000 perm   202 sec   (2522 perm/sec)   p_kst 1.893333e-02   p_cons 8.937255e-03   p_joint 1.372549e-03

Joint ci ratio: 1.559579e-01	ci left: 1.118819e-03	ci right 1.309885e-03	k: 630	n:520000
Cons ci ratio: 5.725908e-02	ci left: 8.676839e-03	ci right 9.190193e-03	k: 4644	n:520000
KS ci ratio: 3.916402e-02	ci left: 1.853161e-02	ci right 1.927377e-02	k: 9828	n:520000
CDK13   520000 perm   208 sec   (2498 perm/sec)   p_kst 1.890000e-02   p_cons 8.930769e-03   p_joint 1.211538e-03

Joint ci ratio: 1.638148e-01	ci left: 9.908338e-04	ci right 1.169409e-03	k: 571	n:530000
Cons ci ratio: 5.668811e-02	ci left: 8.687959e-03	ci right 9.196676e-03	k: 4738	n:530000
KS ci ratio: 3.881850e-02	ci left: 1.851079e-02	ci right 1.924543e-02	k: 10004	n:530000
CDK13   530000 perm   214 sec   (2476 perm/sec)   p_kst 1.887547e-02   p_cons 8.939623e-03   p_joint 1.077358e-03

Joint ci ratio: 1.648292e-01	ci left: 9.600539e-04	ci right 1.134259e-03	k: 564	n:540000
Cons ci ratio: 5.615733e-02	ci left: 8.691386e-03	ci right 9.195385e-03	k: 4828	n:540000
KS ci ratio: 3.848005e-02	ci left: 1.849260e-02	ci right 1.921998e-02	k: 10181	n:540000
CDK13   540000 perm   220 sec   (2455 perm/sec)   p_kst 1.885370e-02   p_cons 8.940741e-03   p_joint 1.044444e-03

Joint ci ratio: 1.667624e-01	ci left: 9.199411e-04	ci right 1.089022e-03	k: 551	n:550000
Cons ci ratio: 5.552173e-02	ci left: 8.732366e-03	ci right 9.232827e-03	k: 4939	n:550000
KS ci ratio: 3.810533e-02	ci left: 1.851833e-02	ci right 1.923947e-02	k: 10382	n:550000
CDK13   550000 perm   226 sec   (2434 perm/sec)   p_kst 1.887636e-02   p_cons 8.980000e-03   p_joint 1.001818e-03

Joint ci ratio: 1.643960e-01	ci left: 9.309016e-04	ci right 1.099329e-03	k: 567	n:560000
Cons ci ratio: 5.505591e-02	ci left: 8.724356e-03	ci right 9.220029e-03	k: 5023	n:560000
KS ci ratio: 3.779233e-02	ci left: 1.849364e-02	ci right 1.920778e-02	k: 10555	n:560000
CDK13   560000 perm   232 sec   (2413 perm/sec)   p_kst 1.884821e-02   p_cons 8.969643e-03   p_joint 1.012500e-03

Joint ci ratio: 1.641085e-01	ci left: 9.179340e-04	ci right 1.083696e-03	k: 569	n:570000
Cons ci ratio: 5.458006e-02	ci left: 8.723567e-03	ci right 9.214777e-03	k: 5111	n:570000
KS ci ratio: 3.746202e-02	ci left: 1.849418e-02	ci right 1.920195e-02	k: 10742	n:570000
CDK13   570000 perm   238 sec   (2392 perm/sec)   p_kst 1.884561e-02   p_cons 8.966667e-03   p_joint 9.982456e-04

Joint ci ratio: 1.625474e-01	ci left: 9.202980e-04	ci right 1.084752e-03	k: 580	n:580000
Cons ci ratio: 5.406915e-02	ci left: 8.738132e-03	ci right 9.225412e-03	k: 5208	n:580000
KS ci ratio: 3.711773e-02	ci left: 1.851693e-02	ci right 1.921892e-02	k: 10942	n:580000
CDK13   580000 perm   244 sec   (2373 perm/sec)   p_kst 1.886552e-02   p_cons 8.979310e-03   p_joint 1.000000e-03

Joint ci ratio: 1.494701e-01	ci left: 1.077365e-03	ci right 1.253015e-03	k: 686	n:590000
Cons ci ratio: 5.760933e-02	ci left: 7.562060e-03	ci right 8.012285e-03	k: 4593	n:590000
KS ci ratio: 3.678949e-02	ci left: 1.853222e-02	ci right 1.922845e-02	k: 11138	n:590000
CDK13   590000 perm   251 sec   (2354 perm/sec)   p_kst 1.887797e-02   p_cons 7.784746e-03   p_joint 1.162712e-03

Joint ci ratio: 1.482877e-01	ci left: 1.077060e-03	ci right 1.251148e-03	k: 697	n:600000
Cons ci ratio: 5.715723e-02	ci left: 7.555946e-03	ci right 8.002160e-03	k: 4666	n:600000
KS ci ratio: 3.650593e-02	ci left: 1.851069e-02	ci right 1.920064e-02	k: 11312	n:600000
CDK13   600000 perm   257 sec   (2335 perm/sec)   p_kst 1.885333e-02   p_cons 7.776667e-03   p_joint 1.161667e-03

Joint ci ratio: 1.520426e-01	ci left: 1.005756e-03	ci right 1.172810e-03	k: 663	n:610000
Cons ci ratio: 5.667345e-02	ci left: 7.561360e-03	ci right 8.003990e-03	k: 4746	n:610000
KS ci ratio: 3.622240e-02	ci left: 1.849638e-02	ci right 1.918033e-02	k: 11490	n:610000
CDK13   610000 perm   263 sec   (2316 perm/sec)   p_kst 1.883607e-02   p_cons 7.780328e-03   p_joint 1.086885e-03

Joint ci ratio: 1.436278e-01	ci left: 1.113802e-03	ci right 1.287687e-03	k: 743	n:620000
Cons ci ratio: 5.621349e-02	ci left: 7.563433e-03	ci right 8.002475e-03	k: 4824	n:620000
KS ci ratio: 3.591559e-02	ci left: 1.851293e-02	ci right 1.919158e-02	k: 11687	n:620000
CDK13   620000 perm   270 sec   (2298 perm/sec)   p_kst 1.885000e-02   p_cons 7.780645e-03   p_joint 1.198387e-03

Joint ci ratio: 1.436292e-01	ci left: 1.096122e-03	ci right 1.267248e-03	k: 743	n:630000
Cons ci ratio: 5.571876e-02	ci left: 7.577978e-03	ci right 8.013868e-03	k: 4910	n:630000
KS ci ratio: 3.563172e-02	ci left: 1.851324e-02	ci right 1.918643e-02	k: 11874	n:630000
CDK13   630000 perm   276 sec   (2279 perm/sec)   p_kst 1.884762e-02   p_cons 7.793651e-03   p_joint 1.179365e-03

Joint ci ratio: 1.427686e-01	ci left: 1.092554e-03	ci right 1.262014e-03	k: 752	n:640000
Cons ci ratio: 5.534860e-02	ci left: 7.561263e-03	ci right 7.993210e-03	k: 4976	n:640000
KS ci ratio: 3.536345e-02	ci left: 1.850428e-02	ci right 1.917197e-02	k: 12055	n:640000
CDK13   640000 perm   283 sec   (2261 perm/sec)   p_kst 1.883594e-02   p_cons 7.775000e-03   p_joint 1.175000e-03

Joint ci ratio: 1.451036e-01	ci left: 1.040150e-03	ci right 1.204349e-03	k: 728	n:650000
Cons ci ratio: 5.495827e-02	ci left: 7.552660e-03	ci right 7.980976e-03	k: 5047	n:650000
KS ci ratio: 3.512455e-02	ci left: 1.847120e-02	ci right 1.913310e-02	k: 12220	n:650000
CDK13   650000 perm   290 sec   (2243 perm/sec)   p_kst 1.880000e-02   p_cons 7.764615e-03   p_joint 1.120000e-03

Joint ci ratio: 1.447080e-01	ci left: 1.030230e-03	ci right 1.192382e-03	k: 732	n:660000
Cons ci ratio: 5.442095e-02	ci left: 7.587672e-03	ci right 8.013635e-03	k: 5147	n:660000
KS ci ratio: 3.488469e-02	ci left: 1.844515e-02	ci right 1.910151e-02	k: 12389	n:660000
CDK13   660000 perm   297 sec   (2226 perm/sec)   p_kst 1.877121e-02   p_cons 7.798485e-03   p_joint 1.109091e-03

Joint ci ratio: 1.444136e-01	ci left: 1.019169e-03	ci right 1.179225e-03	k: 735	n:670000
Cons ci ratio: 5.391978e-02	ci left: 7.615769e-03	ci right 8.039249e-03	k: 5243	n:670000
KS ci ratio: 3.461318e-02	ci left: 1.845836e-02	ci right 1.910999e-02	k: 12584	n:670000
CDK13   670000 perm   303 sec   (2208 perm/sec)   p_kst 1.878209e-02   p_cons 7.825373e-03   p_joint 1.097015e-03

Joint ci ratio: 1.451072e-01	ci left: 9.942589e-04	ci right 1.151218e-03	k: 728	n:680000
Cons ci ratio: 5.359939e-02	ci left: 7.595172e-03	ci right 8.014920e-03	k: 5306	n:680000
KS ci ratio: 3.436162e-02	ci left: 1.845663e-02	ci right 1.910336e-02	k: 12769	n:680000
CDK13   680000 perm   310 sec   (2191 perm/sec)   p_kst 1.877794e-02   p_cons 7.802941e-03   p_joint 1.070588e-03

Joint ci ratio: 1.447115e-01	ci left: 9.854359e-04	ci right 1.140541e-03	k: 732	n:690000
Cons ci ratio: 5.325966e-02	ci left: 7.582330e-03	ci right 7.998630e-03	k: 5374	n:690000
KS ci ratio: 3.413023e-02	ci left: 1.843915e-02	ci right 1.908084e-02	k: 12943	n:690000
CDK13   690000 perm   317 sec   (2174 perm/sec)   p_kst 1.875797e-02   p_cons 7.788406e-03   p_joint 1.060870e-03

Joint ci ratio: 1.466274e-01	ci left: 9.452032e-04	ci right 1.096118e-03	k: 713	n:700000
Cons ci ratio: 5.285783e-02	ci left: 7.589600e-03	ci right 8.003060e-03	k: 5456	n:700000
KS ci ratio: 3.389030e-02	ci left: 1.843636e-02	ci right 1.907335e-02	k: 13127	n:700000
CDK13   700000 perm   324 sec   (2158 perm/sec)   p_kst 1.875286e-02   p_cons 7.794286e-03   p_joint 1.018571e-03

Joint ci ratio: 1.454103e-01	ci left: 9.481745e-04	ci right 1.098198e-03	k: 725	n:710000
Cons ci ratio: 5.240778e-02	ci left: 7.613359e-03	ci right 8.024475e-03	k: 5550	n:710000
KS ci ratio: 3.363090e-02	ci left: 1.846020e-02	ci right 1.909303e-02	k: 13330	n:710000
CDK13   710000 perm   331 sec   (2142 perm/sec)   p_kst 1.877465e-02   p_cons 7.816901e-03   p_joint 1.021127e-03

Joint ci ratio: 1.446160e-01	ci left: 9.457133e-04	ci right 1.094459e-03	k: 733	n:720000
Cons ci ratio: 5.202479e-02	ci left: 7.620020e-03	ci right 8.028399e-03	k: 5632	n:720000
KS ci ratio: 3.336606e-02	ci left: 1.849579e-02	ci right 1.912476e-02	k: 13542	n:720000
CDK13   720000 perm   339 sec   (2126 perm/sec)   p_kst 1.880833e-02   p_cons 7.822222e-03   p_joint 1.018056e-03

Joint ci ratio: 1.440289e-01	ci left: 9.406805e-04	ci right 1.087983e-03	k: 739	n:730000
Cons ci ratio: 5.170025e-02	ci left: 7.611635e-03	ci right 8.016943e-03	k: 5703	n:730000
KS ci ratio: 3.315409e-02	ci left: 1.847879e-02	ci right 1.910312e-02	k: 13716	n:730000
CDK13   730000 perm   346 sec   (2111 perm/sec)   p_kst 1.878904e-02   p_cons 7.812329e-03   p_joint 1.012329e-03

Joint ci ratio: 1.427799e-01	ci left: 9.449060e-04	ci right 1.091478e-03	k: 752	n:740000
Cons ci ratio: 5.128780e-02	ci left: 7.631500e-03	ci right 8.034529e-03	k: 5795	n:740000
KS ci ratio: 3.294611e-02	ci left: 1.846227e-02	ci right 1.908205e-02	k: 13890	n:740000
CDK13   740000 perm   353 sec   (2095 perm/sec)   p_kst 1.877027e-02   p_cons 7.831081e-03   p_joint 1.016216e-03

Joint ci ratio: 1.425915e-01	ci left: 9.348784e-04	ci right 1.079687e-03	k: 754	n:750000
Cons ci ratio: 5.093742e-02	ci left: 7.635051e-03	ci right 8.035431e-03	k: 5875	n:750000
KS ci ratio: 3.273961e-02	ci left: 1.844884e-02	ci right 1.906421e-02	k: 14066	n:750000
CDK13   750000 perm   361 sec   (2079 perm/sec)   p_kst 1.875467e-02   p_cons 7.833333e-03   p_joint 1.005333e-03

Joint ci ratio: 1.413792e-01	ci left: 9.390751e-04	ci right 1.083193e-03	k: 767	n:760000
Cons ci ratio: 5.058555e-02	ci left: 7.641116e-03	ci right 8.038965e-03	k: 5957	n:760000
KS ci ratio: 3.250789e-02	ci left: 1.846842e-02	ci right 1.908000e-02	k: 14267	n:760000
CDK13   760000 perm   368 sec   (2064 perm/sec)   p_kst 1.877237e-02   p_cons 7.838158e-03   p_joint 1.009211e-03

Joint ci ratio: 1.407396e-01	ci left: 9.356493e-04	ci right 1.078537e-03	k: 774	n:770000
Cons ci ratio: 5.026186e-02	ci left: 7.640619e-03	ci right 8.035824e-03	k: 6034	n:770000
KS ci ratio: 3.230720e-02	ci left: 1.845786e-02	ci right 1.906525e-02	k: 14445	n:770000
CDK13   770000 perm   376 sec   (2049 perm/sec)   p_kst 1.875974e-02   p_cons 7.836364e-03   p_joint 1.005195e-03

Joint ci ratio: 1.217663e-01	ci left: 1.246110e-03	ci right 1.408911e-03	k: 1034	n:780000
Cons ci ratio: 4.987033e-02	ci left: 7.662935e-03	ci right 8.056118e-03	k: 6129	n:780000
KS ci ratio: 3.208002e-02	ci left: 1.848193e-02	ci right 1.908576e-02	k: 14650	n:780000
CDK13   780000 perm   383 sec   (2035 perm/sec)   p_kst 1.878205e-02   p_cons 7.857692e-03   p_joint 1.325641e-03

Joint ci ratio: 1.208933e-01	ci left: 1.248748e-03	ci right 1.410640e-03	k: 1049	n:790000
Cons ci ratio: 4.962056e-02	ci left: 7.643439e-03	ci right 8.033601e-03	k: 6191	n:790000
KS ci ratio: 3.187068e-02	ci left: 1.849033e-02	ci right 1.909042e-02	k: 14843	n:790000
CDK13   790000 perm   391 sec   (2021 perm/sec)   p_kst 1.878861e-02   p_cons 7.836709e-03   p_joint 1.327848e-03

Joint ci ratio: 1.228426e-01	ci left: 1.193144e-03	ci right 1.350503e-03	k: 1016	n:800000
Cons ci ratio: 4.930699e-02	ci left: 7.645425e-03	ci right 8.033152e-03	k: 6270	n:800000
KS ci ratio: 3.168687e-02	ci left: 1.847373e-02	ci right 1.906976e-02	k: 15016	n:800000
CDK13   800000 perm   399 sec   (2007 perm/sec)   p_kst 1.877000e-02   p_cons 7.837500e-03   p_joint 1.270000e-03

Joint ci ratio: 1.223029e-01	ci left: 1.189184e-03	ci right 1.345282e-03	k: 1025	n:810000
Cons ci ratio: 4.895658e-02	ci left: 7.660784e-03	ci right 8.046451e-03	k: 6360	n:810000
KS ci ratio: 3.148087e-02	ci left: 1.848695e-02	ci right 1.907946e-02	k: 15213	n:810000
CDK13   810000 perm   407 sec   (1993 perm/sec)   p_kst 1.878148e-02   p_cons 7.851852e-03   p_joint 1.265432e-03

Joint ci ratio: 1.231480e-01	ci left: 1.158132e-03	ci right 1.311280e-03	k: 1011	n:820000
Cons ci ratio: 4.868204e-02	ci left: 7.654093e-03	ci right 8.037201e-03	k: 6432	n:820000
KS ci ratio: 3.129332e-02	ci left: 1.848292e-02	ci right 1.907171e-02	k: 15396	n:820000
CDK13   820000 perm   414 sec   (1980 perm/sec)   p_kst 1.877561e-02   p_cons 7.843902e-03   p_joint 1.232927e-03

Joint ci ratio: 1.225442e-01	ci left: 1.155856e-03	ci right 1.307900e-03	k: 1021	n:830000
Cons ci ratio: 4.837834e-02	ci left: 7.658281e-03	ci right 8.039142e-03	k: 6513	n:830000
KS ci ratio: 3.111112e-02	ci left: 1.847660e-02	ci right 1.906170e-02	k: 15577	n:830000
CDK13   830000 perm   422 sec   (1967 perm/sec)   p_kst 1.876747e-02   p_cons 7.846988e-03   p_joint 1.230120e-03

Joint ci ratio: 1.224252e-01	ci left: 1.144404e-03	ci right 1.294784e-03	k: 1023	n:840000
Cons ci ratio: 4.804356e-02	ci left: 7.674140e-03	ci right 8.053075e-03	k: 6604	n:840000
KS ci ratio: 3.093007e-02	ci left: 1.847281e-02	ci right 1.905432e-02	k: 15760	n:840000
CDK13   840000 perm   430 sec   (1953 perm/sec)   p_kst 1.876190e-02   p_cons 7.861905e-03   p_joint 1.217857e-03

Joint ci ratio: 1.224860e-01	ci left: 1.129799e-03	ci right 1.278340e-03	k: 1022	n:850000
Cons ci ratio: 4.778762e-02	ci left: 7.666384e-03	ci right 8.042864e-03	k: 6675	n:850000
KS ci ratio: 3.073446e-02	ci left: 1.849013e-02	ci right 1.906845e-02	k: 15961	n:850000
CDK13   850000 perm   438 sec   (1940 perm/sec)   p_kst 1.877765e-02   p_cons 7.852941e-03   p_joint 1.202353e-03

Joint ci ratio: 1.217150e-01	ci left: 1.131316e-03	ci right 1.279053e-03	k: 1035	n:860000
Cons ci ratio: 4.750380e-02	ci left: 7.669155e-03	ci right 8.043473e-03	k: 6755	n:860000
KS ci ratio: 3.055023e-02	ci left: 1.849783e-02	ci right 1.907286e-02	k: 16154	n:860000
CDK13   860000 perm   446 sec   (1928 perm/sec)   p_kst 1.878372e-02   p_cons 7.854651e-03   p_joint 1.203488e-03

Joint ci ratio: 1.213063e-01	ci left: 1.126114e-03	ci right 1.272642e-03	k: 1042	n:870000
Cons ci ratio: 4.726682e-02	ci left: 7.658238e-03	ci right 8.030108e-03	k: 6823	n:870000
KS ci ratio: 3.037211e-02	ci left: 1.850194e-02	ci right 1.907368e-02	k: 16344	n:870000
CDK13   870000 perm   454 sec   (1915 perm/sec)   p_kst 1.878621e-02   p_cons 7.842529e-03   p_joint 1.197701e-03

Joint ci ratio: 1.205001e-01	ci left: 1.128745e-03	ci right 1.274570e-03	k: 1056	n:880000
Cons ci ratio: 4.701272e-02	ci left: 7.654312e-03	ci right 8.023939e-03	k: 6897	n:880000
KS ci ratio: 3.019893e-02	ci left: 1.850371e-02	ci right 1.907219e-02	k: 16532	n:880000
CDK13   880000 perm   463 sec   (1902 perm/sec)   p_kst 1.878636e-02   p_cons 7.837500e-03   p_joint 1.200000e-03

Joint ci ratio: 1.197098e-01	ci left: 1.131321e-03	ci right 1.276451e-03	k: 1070	n:890000
Cons ci ratio: 4.672554e-02	ci left: 7.662696e-03	ci right 8.030406e-03	k: 6982	n:890000
KS ci ratio: 3.002593e-02	ci left: 1.850880e-02	ci right 1.907412e-02	k: 16723	n:890000
CDK13   890000 perm   471 sec   (1890 perm/sec)   p_kst 1.878989e-02   p_cons 7.844944e-03   p_joint 1.202247e-03

Joint ci ratio: 1.198226e-01	ci left: 1.116594e-03	ci right 1.259980e-03	k: 1068	n:900000
Cons ci ratio: 4.646344e-02	ci left: 7.664310e-03	ci right 8.029980e-03	k: 7061	n:900000
KS ci ratio: 2.986758e-02	ci left: 1.849944e-02	ci right 1.906144e-02	k: 16901	n:900000
CDK13   900000 perm   480 sec   (1877 perm/sec)   p_kst 1.877889e-02   p_cons 7.845556e-03   p_joint 1.186667e-03

Joint ci ratio: 1.192109e-01	ci left: 1.116051e-03	ci right 1.258584e-03	k: 1079	n:910000
Cons ci ratio: 4.623181e-02	ci left: 7.657204e-03	ci right 8.020665e-03	k: 7132	n:910000
KS ci ratio: 2.970461e-02	ci left: 1.849902e-02	ci right 1.905789e-02	k: 17087	n:910000
CDK13   910000 perm   488 sec   (1864 perm/sec)   p_kst 1.877692e-02   p_cons 7.837363e-03   p_joint 1.185714e-03

Joint ci ratio: 1.187721e-01	ci left: 1.112356e-03	ci right 1.253858e-03	k: 1087	n:920000
Cons ci ratio: 4.597789e-02	ci left: 7.658853e-03	ci right 8.020343e-03	k: 7211	n:920000
KS ci ratio: 2.956085e-02	ci left: 1.847812e-02	ci right 1.903361e-02	k: 17254	n:920000
CDK13   920000 perm   497 sec   (1852 perm/sec)   p_kst 1.875435e-02   p_cons 7.838043e-03   p_joint 1.181522e-03

Joint ci ratio: 1.197689e-01	ci left: 1.081617e-03	ci right 1.220445e-03	k: 1069	n:930000
Cons ci ratio: 4.577242e-02	ci left: 7.645589e-03	ci right 8.004798e-03	k: 7276	n:930000
KS ci ratio: 2.941229e-02	ci left: 1.846621e-02	ci right 1.901851e-02	k: 17429	n:930000
CDK13   930000 perm   505 sec   (1840 perm/sec)   p_kst 1.874086e-02   p_cons 7.823656e-03   p_joint 1.149462e-03

Joint ci ratio: 1.229148e-01	ci left: 1.014405e-03	ci right 1.148275e-03	k: 1015	n:940000
Cons ci ratio: 4.552907e-02	ci left: 7.646285e-03	ci right 8.003566e-03	k: 7354	n:940000
KS ci ratio: 2.924140e-02	ci left: 1.848520e-02	ci right 1.903480e-02	k: 17633	n:940000
CDK13   940000 perm   514 sec   (1828 perm/sec)   p_kst 1.875851e-02   p_cons 7.823404e-03   p_joint 1.079787e-03

Joint ci ratio: 1.223144e-01	ci left: 1.013930e-03	ci right 1.147036e-03	k: 1025	n:950000
Cons ci ratio: 4.521910e-02	ci left: 7.670910e-03	ci right 8.026838e-03	k: 7455	n:950000
KS ci ratio: 2.907263e-02	ci left: 1.850483e-02	ci right 1.905179e-02	k: 17838	n:950000
CDK13   950000 perm   523 sec   (1815 perm/sec)   p_kst 1.877684e-02   p_cons 7.847368e-03   p_joint 1.078947e-03

Joint ci ratio: 1.219586e-01	ci left: 1.009427e-03	ci right 1.141529e-03	k: 1031	n:960000
Cons ci ratio: 4.496338e-02	ci left: 7.678548e-03	ci right 8.032764e-03	k: 7540	n:960000
KS ci ratio: 2.893535e-02	ci left: 1.848787e-02	ci right 1.903170e-02	k: 18008	n:960000
CDK13   960000 perm   532 sec   (1804 perm/sec)   p_kst 1.875833e-02   p_cons 7.854167e-03   p_joint 1.073958e-03

Joint ci ratio: 1.212556e-01	ci left: 1.011016e-03	ci right 1.142508e-03	k: 1043	n:970000
Cons ci ratio: 4.470013e-02	ci left: 7.690113e-03	ci right 8.042732e-03	k: 7629	n:970000
KS ci ratio: 2.879194e-02	ci left: 1.848150e-02	ci right 1.902241e-02	k: 18188	n:970000
CDK13   970000 perm   541 sec   (1793 perm/sec)   p_kst 1.875052e-02   p_cons 7.864948e-03   p_joint 1.075258e-03

Joint ci ratio: 1.206218e-01	ci left: 1.011584e-03	ci right 1.142414e-03	k: 1054	n:980000
Cons ci ratio: 4.447049e-02	ci left: 7.691356e-03	ci right 8.042174e-03	k: 7708	n:980000
KS ci ratio: 2.864508e-02	ci left: 1.848236e-02	ci right 1.902049e-02	k: 18375	n:980000
CDK13   980000 perm   550 sec   (1781 perm/sec)   p_kst 1.875000e-02   p_cons 7.865306e-03   p_joint 1.075510e-03

Joint ci ratio: 1.201672e-01	ci left: 1.009204e-03	ci right 1.139198e-03	k: 1062	n:990000
Cons ci ratio: 4.419291e-02	ci left: 7.710561e-03	ci right 8.060004e-03	k: 7805	n:990000
KS ci ratio: 2.851139e-02	ci left: 1.846917e-02	ci right 1.900436e-02	k: 18548	n:990000
CDK13   990000 perm   559 sec   (1770 perm/sec)   p_kst 1.873535e-02   p_cons 7.883838e-03   p_joint 1.072727e-03

Joint ci ratio: 1.196060e-01	ci left: 1.008812e-03	ci right 1.138106e-03	k: 1072	n:1000000
Cons ci ratio: 4.401600e-02	ci left: 7.695760e-03	ci right 8.043100e-03	k: 7868	n:1000000
KS ci ratio: 2.837030e-02	ci left: 1.846816e-02	ci right 1.900063e-02	k: 18733	n:1000000
CDK13   1000000 perm   569 sec   (1759 perm/sec)   p_kst 1.873300e-02   p_cons 7.868000e-03   p_joint 1.072000e-03

Joint ci ratio: 1.188878e-01	ci left: 1.011311e-03	ci right 1.140093e-03	k: 1085	n:1010000
Cons ci ratio: 4.379670e-02	ci left: 7.696923e-03	ci right 8.042542e-03	k: 7947	n:1010000
KS ci ratio: 2.823129e-02	ci left: 1.846718e-02	ci right 1.899697e-02	k: 18918	n:1010000
CDK13   1010000 perm   578 sec   (1748 perm/sec)   p_kst 1.873069e-02   p_cons 7.868317e-03   p_joint 1.074257e-03

Joint ci ratio: 1.189982e-01	ci left: 9.994933e-04	ci right 1.126897e-03	k: 1083	n:1020000
Cons ci ratio: 4.358338e-02	ci left: 7.697098e-03	ci right 8.040999e-03	k: 8025	n:1020000
KS ci ratio: 2.811304e-02	ci left: 1.844188e-02	ci right 1.896870e-02	k: 19078	n:1020000
CDK13   1020000 perm   587 sec   (1736 perm/sec)   p_kst 1.870392e-02   p_cons 7.867647e-03   p_joint 1.061765e-03

Joint ci ratio: 1.203398e-01	ci left: 9.671850e-04	ci right 1.091959e-03	k: 1059	n:1030000
Cons ci ratio: 4.337854e-02	ci left: 7.695353e-03	ci right 8.037520e-03	k: 8101	n:1030000
KS ci ratio: 2.796518e-02	ci left: 1.845758e-02	ci right 1.898202e-02	k: 19280	n:1030000
CDK13   1030000 perm   597 sec   (1725 perm/sec)   p_kst 1.871845e-02   p_cons 7.865049e-03   p_joint 1.028155e-03

Joint ci ratio: 1.196084e-01	ci left: 9.700101e-04	ci right 1.094334e-03	k: 1072	n:1040000
Cons ci ratio: 4.315529e-02	ci left: 7.701256e-03	ci right 8.041879e-03	k: 8185	n:1040000
KS ci ratio: 2.783857e-02	ci left: 1.844815e-02	ci right 1.896992e-02	k: 19456	n:1040000
CDK13   1040000 perm   606 sec   (1715 perm/sec)   p_kst 1.870769e-02   p_cons 7.870192e-03   p_joint 1.030769e-03

Joint ci ratio: 1.190000e-01	ci left: 9.709355e-04	ci right 1.094701e-03	k: 1083	n:1050000
Cons ci ratio: 4.294854e-02	ci left: 7.702339e-03	ci right 8.041337e-03	k: 8264	n:1050000
KS ci ratio: 2.772013e-02	ci left: 1.843040e-02	ci right 1.894941e-02	k: 19623	n:1050000
CDK13   1050000 perm   616 sec   (1705 perm/sec)   p_kst 1.868857e-02   p_cons 7.870476e-03   p_joint 1.031429e-03

Joint ci ratio: 1.186178e-01	ci left: 9.681832e-04	ci right 1.091173e-03	k: 1090	n:1060000
Cons ci ratio: 4.273183e-02	ci left: 7.708072e-03	ci right 8.045569e-03	k: 8348	n:1060000
KS ci ratio: 2.759822e-02	ci left: 1.841954e-02	ci right 1.893593e-02	k: 19797	n:1060000
CDK13   1060000 perm   626 sec   (1695 perm/sec)   p_kst 1.867642e-02   p_cons 7.875472e-03   p_joint 1.028302e-03

Joint ci ratio: 1.187820e-01	ci left: 9.564139e-04	ci right 1.078089e-03	k: 1087	n:1070000
Cons ci ratio: 4.252600e-02	ci left: 7.710928e-03	ci right 8.046884e-03	k: 8429	n:1070000
KS ci ratio: 2.747510e-02	ci left: 1.841260e-02	ci right 1.892646e-02	k: 19975	n:1070000
CDK13   1070000 perm   635 sec   (1684 perm/sec)   p_kst 1.866822e-02   p_cons 7.877570e-03   p_joint 1.015888e-03

Joint ci ratio: 1.182938e-01	ci left: 9.556445e-04	ci right 1.076687e-03	k: 1096	n:1080000
Cons ci ratio: 4.235070e-02	ci left: 7.703657e-03	ci right 8.037879e-03	k: 8499	n:1080000
KS ci ratio: 2.735707e-02	ci left: 1.840120e-02	ci right 1.891250e-02	k: 20148	n:1080000
CDK13   1080000 perm   645 sec   (1675 perm/sec)   p_kst 1.865556e-02   p_cons 7.869444e-03   p_joint 1.014815e-03

Joint ci ratio: 1.191674e-01	ci left: 9.326335e-04	ci right 1.051695e-03	k: 1080	n:1090000
Cons ci ratio: 4.213545e-02	ci left: 7.711956e-03	ci right 8.044796e-03	k: 8586	n:1090000
KS ci ratio: 2.724055e-02	ci left: 1.839001e-02	ci right 1.889879e-02	k: 20321	n:1090000
CDK13   1090000 perm   654 sec   (1665 perm/sec)   p_kst 1.864312e-02   p_cons 7.877064e-03   p_joint 9.908257e-04

Joint ci ratio: 1.195004e-01	ci left: 9.188629e-04	ci right 1.036517e-03	k: 1074	n:1100000
Cons ci ratio: 4.193076e-02	ci left: 7.717408e-03	ci right 8.048827e-03	k: 8670	n:1100000
KS ci ratio: 2.711001e-02	ci left: 1.839980e-02	ci right 1.890637e-02	k: 20517	n:1100000
CDK13   1100000 perm   664 sec   (1656 perm/sec)   p_kst 1.865182e-02   p_cons 7.881818e-03   p_joint 9.763636e-04

Joint ci ratio: 1.214970e-01	ci left: 8.800025e-04	ci right 9.946994e-04	k: 1039	n:1110000
Cons ci ratio: 4.174585e-02	ci left: 7.716526e-03	ci right 8.046410e-03	k: 8747	n:1110000
KS ci ratio: 2.698000e-02	ci left: 1.841121e-02	ci right 1.891563e-02	k: 20715	n:1110000
CDK13   1110000 perm   675 sec   (1645 perm/sec)   p_kst 1.866216e-02   p_cons 7.880180e-03   p_joint 9.360360e-04

Joint ci ratio: 1.046634e-01	ci left: 1.185410e-03	ci right 1.317191e-03	k: 1400	n:1120000
Cons ci ratio: 4.158475e-02	ci left: 7.707709e-03	ci right 8.035915e-03	k: 8815	n:1120000
KS ci ratio: 2.687412e-02	ci left: 1.839227e-02	ci right 1.889415e-02	k: 20879	n:1120000
CDK13   1120000 perm   685 sec   (1636 perm/sec)   p_kst 1.864196e-02   p_cons 7.870536e-03   p_joint 1.250000e-03

Joint ci ratio: 1.045520e-01	ci left: 1.177505e-03	ci right 1.308259e-03	k: 1403	n:1130000
Cons ci ratio: 4.141609e-02	ci left: 7.702555e-03	ci right 8.029179e-03	k: 8887	n:1130000
KS ci ratio: 2.674939e-02	ci left: 1.840092e-02	ci right 1.890067e-02	k: 21074	n:1130000
CDK13   1130000 perm   695 sec   (1626 perm/sec)   p_kst 1.864956e-02   p_cons 7.864602e-03   p_joint 1.241593e-03

Joint ci ratio: 1.038879e-01	ci left: 1.182554e-03	ci right 1.312984e-03	k: 1421	n:1140000
Cons ci ratio: 4.124020e-02	ci left: 7.700966e-03	ci right 8.026103e-03	k: 8963	n:1140000
KS ci ratio: 2.664363e-02	ci left: 1.838589e-02	ci right 1.888323e-02	k: 21242	n:1140000
CDK13   1140000 perm   705 sec   (1617 perm/sec)   p_kst 1.863333e-02   p_cons 7.862281e-03   p_joint 1.246491e-03

Joint ci ratio: 1.034885e-01	ci left: 1.181588e-03	ci right 1.311380e-03	k: 1432	n:1150000
Cons ci ratio: 4.109173e-02	ci left: 7.689940e-03	ci right 8.013415e-03	k: 9028	n:1150000
KS ci ratio: 2.653280e-02	ci left: 1.837976e-02	ci right 1.887484e-02	k: 21420	n:1150000
CDK13   1150000 perm   715 sec   (1608 perm/sec)   p_kst 1.862609e-02   p_cons 7.850435e-03   p_joint 1.245217e-03

Joint ci ratio: 1.030579e-01	ci left: 1.181479e-03	ci right 1.310687e-03	k: 1444	n:1160000
Cons ci ratio: 4.092898e-02	ci left: 7.685080e-03	ci right 8.007040e-03	k: 9100	n:1160000
KS ci ratio: 2.642334e-02	ci left: 1.837375e-02	ci right 1.886659e-02	k: 21598	n:1160000
CDK13   1160000 perm   725 sec   (1599 perm/sec)   p_kst 1.861897e-02   p_cons 7.844828e-03   p_joint 1.244828e-03

Joint ci ratio: 1.027032e-01	ci left: 1.179708e-03	ci right 1.308251e-03	k: 1454	n:1170000
Cons ci ratio: 4.075248e-02	ci left: 7.686227e-03	ci right 8.006814e-03	k: 9179	n:1170000
KS ci ratio: 2.631276e-02	ci left: 1.837124e-02	ci right 1.886192e-02	k: 21780	n:1170000
CDK13   1170000 perm   736 sec   (1591 perm/sec)   p_kst 1.861538e-02   p_cons 7.845299e-03   p_joint 1.242735e-03

Joint ci ratio: 1.022126e-01	ci left: 1.181271e-03	ci right 1.309333e-03	k: 1468	n:1180000
Cons ci ratio: 4.058929e-02	ci left: 7.683164e-03	ci right 8.002310e-03	k: 9253	n:1180000
KS ci ratio: 2.618959e-02	ci left: 1.838814e-02	ci right 1.887694e-02	k: 21985	n:1180000
CDK13   1180000 perm   746 sec   (1582 perm/sec)   p_kst 1.863136e-02   p_cons 7.841525e-03   p_joint 1.244068e-03

Joint ci ratio: 1.020741e-01	ci left: 1.174620e-03	ci right 1.301777e-03	k: 1472	n:1190000
Cons ci ratio: 4.041059e-02	ci left: 7.686809e-03	ci right 8.004669e-03	k: 9335	n:1190000
KS ci ratio: 2.607532e-02	ci left: 1.839474e-02	ci right 1.888155e-02	k: 22178	n:1190000
CDK13   1190000 perm   757 sec   (1573 perm/sec)   p_kst 1.863697e-02   p_cons 7.844538e-03   p_joint 1.236975e-03

Joint ci ratio: 1.050060e-01	ci left: 1.099076e-03	ci right 1.221685e-03	k: 1391	n:1200000
Cons ci ratio: 4.025361e-02	ci left: 7.682972e-03	ci right 7.999410e-03	k: 9408	n:1200000
KS ci ratio: 2.597732e-02	ci left: 1.838054e-02	ci right 1.886512e-02	k: 22346	n:1200000
CDK13   1200000 perm   767 sec   (1564 perm/sec)   p_kst 1.862167e-02   p_cons 7.840000e-03   p_joint 1.159167e-03

Joint ci ratio: 1.044075e-01	ci left: 1.102870e-03	ci right 1.225158e-03	k: 1407	n:1210000
Cons ci ratio: 4.006652e-02	ci left: 7.691474e-03	ci right 8.006756e-03	k: 9496	n:1210000
KS ci ratio: 2.586754e-02	ci left: 1.838464e-02	ci right 1.886725e-02	k: 22536	n:1210000
CDK13   1210000 perm   778 sec   (1556 perm/sec)   p_kst 1.862479e-02   p_cons 7.847934e-03   p_joint 1.162810e-03

Joint ci ratio: 1.046688e-01	ci left: 1.088242e-03	ci right 1.209228e-03	k: 1400	n:1220000
Cons ci ratio: 3.988830e-02	ci left: 7.697406e-03	ci right 8.011495e-03	k: 9581	n:1220000
KS ci ratio: 2.575915e-02	ci left: 1.838868e-02	ci right 1.886934e-02	k: 22726	n:1220000
CDK13   1220000 perm   788 sec   (1548 perm/sec)   p_kst 1.862787e-02   p_cons 7.853279e-03   p_joint 1.147541e-03

Joint ci ratio: 9.248211e-02	ci left: 1.391069e-03	ci right 1.526743e-03	k: 1793	n:1230000
Cons ci ratio: 3.972488e-02	ci left: 7.698414e-03	ci right 8.011228e-03	k: 9660	n:1230000
KS ci ratio: 2.566238e-02	ci left: 1.837812e-02	ci right 1.885667e-02	k: 22898	n:1230000
CDK13   1230000 perm   799 sec   (1540 perm/sec)   p_kst 1.861626e-02   p_cons 7.853659e-03   p_joint 1.457724e-03

Outputting figure to mutsig2_images.part000000000035/CDK13.7_4595_1230000_0.018616_0.0078537_0.0014577.png
                gene_name: CDK13
               theta_stop: 0.092 
                    nperm: 1230000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.0079 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0080 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 25 percent done.
CDYL
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
Cons ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
KS ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
CDYL   10000 perm   2 sec   (6446 perm/sec)   p_kst 7.300000e-02   p_cons 4.346000e-01   p_joint 1.082000e-01

Joint ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
Cons ci ratio: 3.131251e-02	ci left: 4.324060e-01	ci right 4.462117e-01	k: 8786	n:20000
KS ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
CDYL   20000 perm   3 sec   (5798 perm/sec)   p_kst 6.695000e-02   p_cons 4.393000e-01   p_joint 1.277500e-01

Joint ci ratio: 5.740248e-02	ci left: 1.306580e-01	ci right 1.384129e-01	k: 4035	n:30000
Cons ci ratio: 2.552410e-02	ci left: 4.345055e-01	ci right 4.457728e-01	k: 13204	n:30000
KS ci ratio: 8.436454e-02	ci left: 6.429418e-02	ci right 6.998999e-02	k: 2013	n:30000
CDYL   30000 perm   5 sec   (5537 perm/sec)   p_kst 6.710000e-02   p_cons 4.401333e-01   p_joint 1.345000e-01

Outputting figure to mutsig2_images.part000000000035/CDYL.5_1663_30000_0.0671_0.44013_0.1345.png
                gene_name: CDYL
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 27 percent done.
CDK15
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
CDK15   10000 perm   1 sec   (6686 perm/sec)   p_kst 3.903000e-01   p_cons 5.762000e-01   p_joint 4.686000e-01

Outputting figure to mutsig2_images.part000000000035/CDK15.4_1203_10000_0.3903_0.5762_0.4686.png
                gene_name: CDK15
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 29 percent done.
CDK11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
CDK11B   10000 perm   2 sec   (6045 perm/sec)   p_kst 1.934000e-01   p_cons 4.050000e-02   p_joint 1.384000e-01

Joint ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
Cons ci ratio: 1.479695e-01	ci left: 3.138665e-02	ci right 3.645004e-02	k: 677	n:20000
KS ci ratio: 5.510092e-02	ci left: 1.963554e-01	ci right 2.075314e-01	k: 4038	n:20000
CDK11B   20000 perm   4 sec   (5438 perm/sec)   p_kst 2.019000e-01   p_cons 3.385000e-02   p_joint 1.038000e-01

Joint ci ratio: 7.529148e-02	ci left: 7.973818e-02	ci right 8.600955e-02	k: 2485	n:30000
Cons ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
KS ci ratio: 4.490401e-02	ci left: 1.979979e-01	ci right 2.071264e-01	k: 6076	n:30000
CDK11B   30000 perm   6 sec   (5206 perm/sec)   p_kst 2.025333e-01   p_cons 3.380000e-02   p_joint 8.283333e-02

Joint ci ratio: 7.029967e-02	ci left: 6.958387e-02	ci right 7.467845e-02	k: 2884	n:40000
Cons ci ratio: 9.878489e-02	ci left: 3.600098e-02	ci right 3.976649e-02	k: 1514	n:40000
KS ci ratio: 3.887205e-02	ci left: 1.987447e-01	ci right 2.066485e-01	k: 8107	n:40000
CDK11B   40000 perm   8 sec   (5052 perm/sec)   p_kst 2.026750e-01   p_cons 3.785000e-02   p_joint 7.210000e-02

Outputting figure to mutsig2_images.part000000000035/CDK11B.5_2459_40000_0.20267_0.03785_0.0721.png
                gene_name: CDK11B
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 31 percent done.
CDKAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
Cons ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
KS ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
CDKAL1   10000 perm   2 sec   (6633 perm/sec)   p_kst 5.643000e-01   p_cons 1.919000e-01   p_joint 7.257000e-01

Outputting figure to mutsig2_images.part000000000035/CDKAL1.5_1796_10000_0.5643_0.1919_0.7257.png
                gene_name: CDKAL1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
CDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
KS ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
CDX4   10000 perm   1 sec   (6712 perm/sec)   p_kst 9.454000e-01   p_cons 8.360000e-02   p_joint 3.063000e-01

Joint ci ratio: 3.942450e-02	ci left: 3.242295e-01	ci right 3.373197e-01	k: 6615	n:20000
Cons ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
KS ci ratio: 6.536979e-03	ci left: 9.441642e-01	ci right 9.504050e-01	k: 18947	n:20000
CDX4   20000 perm   3 sec   (6000 perm/sec)   p_kst 9.473500e-01   p_cons 8.485000e-02   p_joint 3.307500e-01

Outputting figure to mutsig2_images.part000000000035/CDX4.5_866_20000_0.94735_0.08485_0.33075.png
                gene_name: CDX4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 35 percent done.
CDH26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
Cons ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
CDH26   10000 perm   2 sec   (6367 perm/sec)   p_kst 2.163000e-01   p_cons 6.566000e-01   p_joint 4.021000e-01

Outputting figure to mutsig2_images.part000000000035/CDH26.4_2593_10000_0.2163_0.6566_0.4021.png
                gene_name: CDH26
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 37 percent done.
CDK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
KS ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
CDK17   10000 perm   1 sec   (7174 perm/sec)   p_kst 8.170000e-02   p_cons 3.705000e-01   p_joint 1.277000e-01

Joint ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
Cons ci ratio: 3.604569e-02	ci left: 3.648471e-01	ci right 3.782902e-01	k: 7431	n:20000
KS ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
CDK17   20000 perm   3 sec   (6339 perm/sec)   p_kst 8.370000e-02   p_cons 3.715500e-01   p_joint 1.277000e-01

Outputting figure to mutsig2_images.part000000000035/CDK17.4_1674_20000_0.0837_0.37155_0.1277.png
                gene_name: CDK17
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 38 percent done.
CDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
Cons ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
CDK2   10000 perm   1 sec   (8145 perm/sec)   p_kst 3.226000e-01   p_cons 1.460000e-01   p_joint 9.440000e-02

Joint ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
Cons ci ratio: 6.698357e-02	ci left: 1.412809e-01	ci right 1.511222e-01	k: 2923	n:20000
KS ci ratio: 4.012949e-02	ci left: 3.164706e-01	ci right 3.294809e-01	k: 6459	n:20000
CDK2   20000 perm   3 sec   (7129 perm/sec)   p_kst 3.229500e-01   p_cons 1.461500e-01   p_joint 1.058500e-01

Outputting figure to mutsig2_images.part000000000035/CDK2.4_925_20000_0.32295_0.14615_0.10585.png
                gene_name: CDK2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
CDKL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.437065e-02	ci left: 5.555163e-01	ci right 5.750457e-01	k: 5653	n:10000
KS ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
CDKL5   10000 perm   2 sec   (6344 perm/sec)   p_kst 9.458000e-01   p_cons 5.653000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKL5.4_3173_10000_0.9458_0.5653_1.png
                gene_name: CDKL5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
KS ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
CDR1   10000 perm   1 sec   (7113 perm/sec)   p_kst 7.584000e-01   p_cons 8.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDR1.4_793_10000_0.7584_0.8309_1.png
                gene_name: CDR1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CEACAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
Cons ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
KS ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
CEACAM18   10000 perm   1 sec   (7165 perm/sec)   p_kst 5.116000e-01   p_cons 9.232000e-01   p_joint 6.099000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM18.4_1217_10000_0.5116_0.9232_0.6099.png
                gene_name: CEACAM18
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 46 percent done.
CEACAM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
Cons ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
KS ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
CEACAM20   10000 perm   2 sec   (6660 perm/sec)   p_kst 6.115000e-01   p_cons 2.072000e-01   p_joint 5.154000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM20.4_1840_10000_0.6115_0.2072_0.5154.png
                gene_name: CEACAM20
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
CDH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
CDH3   10000 perm   1 sec   (6680 perm/sec)   p_kst 1.235000e-01   p_cons 6.480000e-02   p_joint 8.440000e-02

Joint ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
Cons ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
KS ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
CDH3   20000 perm   3 sec   (5959 perm/sec)   p_kst 1.217500e-01   p_cons 6.675000e-02   p_joint 4.780000e-02

Joint ci ratio: 8.076819e-02	ci left: 6.985214e-02	ci right 7.576424e-02	k: 2183	n:30000
Cons ci ratio: 8.374221e-02	ci left: 6.520923e-02	ci right 7.094143e-02	k: 2041	n:30000
KS ci ratio: 6.149134e-02	ci left: 1.156195e-01	ci right 1.229877e-01	k: 3578	n:30000
CDH3   30000 perm   5 sec   (5633 perm/sec)   p_kst 1.192667e-01   p_cons 6.803333e-02   p_joint 7.276667e-02

Outputting figure to mutsig2_images.part000000000035/CDH3.3_2554_30000_0.11927_0.068033_0.072767.png
                gene_name: CDH3
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 50 percent done.
CDK18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
Cons ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
CDK18   10000 perm   1 sec   (7016 perm/sec)   p_kst 4.155000e-01   p_cons 6.973000e-01   p_joint 9.225000e-01

Outputting figure to mutsig2_images.part000000000035/CDK18.3_1575_10000_0.4155_0.6973_0.9225.png
                gene_name: CDK18
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 52 percent done.
CDK5RAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
Cons ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
KS ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
CDK5RAP1   10000 perm   1 sec   (6946 perm/sec)   p_kst 2.962000e-01   p_cons 8.362000e-01   p_joint 4.782000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP1.3_1816_10000_0.2962_0.8362_0.4782.png
                gene_name: CDK5RAP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 54 percent done.
CDK5RAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
Cons ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
KS ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
CDK5RAP3   10000 perm   1 sec   (6749 perm/sec)   p_kst 2.080000e-01   p_cons 3.213000e-01   p_joint 1.792000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP3.3_1577_10000_0.208_0.3213_0.1792.png
                gene_name: CDK5RAP3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 56 percent done.
CDK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
CDK6   10000 perm   1 sec   (7515 perm/sec)   p_kst 1.923000e-01   p_cons 8.340000e-02   p_joint 2.303000e-01

Joint ci ratio: 3.714745e-02	ci left: 3.509535e-01	ci right 3.642879e-01	k: 7152	n:20000
Cons ci ratio: 9.044839e-02	ci left: 8.195393e-02	ci right 8.976696e-02	k: 1716	n:20000
KS ci ratio: 5.690763e-02	ci left: 1.862647e-01	ci right 1.972251e-01	k: 3834	n:20000
CDK6   20000 perm   3 sec   (6733 perm/sec)   p_kst 1.917000e-01   p_cons 8.580000e-02   p_joint 3.576000e-01

Outputting figure to mutsig2_images.part000000000035/CDK6.3_1009_20000_0.1917_0.0858_0.3576.png
                gene_name: CDK6
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
CDK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
KS ci ratio: 1.249691e-02	ci left: 9.019602e-01	ci right 9.134010e-01	k: 9078	n:10000
CDK7   10000 perm   1 sec   (7008 perm/sec)   p_kst 9.078000e-01   p_cons 6.329000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK7.3_1089_10000_0.9078_0.6329_1.png
                gene_name: CDK7
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CDK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
KS ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
CDK8   10000 perm   1 sec   (7250 perm/sec)   p_kst 6.754000e-01   p_cons 3.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK8.3_1447_10000_0.6754_0.3879_1.png
                gene_name: CDK8
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CDKL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
CDKL3   10000 perm   1 sec   (6754 perm/sec)   p_kst 3.462000e-01   p_cons 2.547000e-01   p_joint 4.000000e-01

Outputting figure to mutsig2_images.part000000000035/CDKL3.3_1831_10000_0.3462_0.2547_0.4.png
                gene_name: CDKL3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 63 percent done.
CDKL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
Cons ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
KS ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
CDKL4   10000 perm   1 sec   (7425 perm/sec)   p_kst 1.859000e-01   p_cons 3.295000e-01   p_joint 3.224000e-01

Outputting figure to mutsig2_images.part000000000035/CDKL4.3_980_10000_0.1859_0.3295_0.3224.png
                gene_name: CDKL4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 65 percent done.
CDKN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
Cons ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
KS ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
CDKN1B   10000 perm   1 sec   (7459 perm/sec)   p_kst 8.900000e-02   p_cons 3.753000e-01   p_joint 1.522000e-01

Joint ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
Cons ci ratio: 3.604954e-02	ci left: 3.647973e-01	ci right 3.782401e-01	k: 7430	n:20000
KS ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
CDKN1B   20000 perm   3 sec   (6602 perm/sec)   p_kst 8.140000e-02   p_cons 3.715000e-01   p_joint 1.222000e-01

Outputting figure to mutsig2_images.part000000000035/CDKN1B.3_605_20000_0.0814_0.3715_0.1222.png
                gene_name: CDKN1B
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
CDS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
Cons ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
KS ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
CDS2   10000 perm   1 sec   (7223 perm/sec)   p_kst 5.163000e-01   p_cons 1.598000e-01   p_joint 4.506000e-01

Outputting figure to mutsig2_images.part000000000035/CDS2.3_1390_10000_0.5163_0.1598_0.4506.png
                gene_name: CDS2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 69 percent done.
CDYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
CDYL2   10000 perm   1 sec   (6915 perm/sec)   p_kst 7.673000e-01   p_cons 1.318000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.084650e-02	ci left: 1.280270e-01	ci right 1.374801e-01	k: 2654	n:20000
KS ci ratio: 1.533728e-02	ci left: 7.596656e-01	ci right 7.714571e-01	k: 15312	n:20000
CDYL2   20000 perm   3 sec   (6161 perm/sec)   p_kst 7.656000e-01   p_cons 1.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDYL2.3_1549_20000_0.7656_0.1327_1.png
                gene_name: CDYL2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CDHR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
CDHR5   10000 perm   1 sec   (6870 perm/sec)   p_kst 9.100000e-02   p_cons 8.393000e-01   p_joint 5.138000e-01

Joint ci ratio: 2.607975e-02	ci left: 5.234543e-01	ci right 5.373369e-01	k: 10608	n:20000
Cons ci ratio: 1.196952e-02	ci left: 8.377313e-01	ci right 8.478688e-01	k: 16857	n:20000
KS ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
CDHR5   20000 perm   3 sec   (6167 perm/sec)   p_kst 9.225000e-02   p_cons 8.428500e-01   p_joint 5.304000e-01

Outputting figure to mutsig2_images.part000000000035/CDHR5.2_2598_20000_0.09225_0.84285_0.5304.png
                gene_name: CDHR5
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 73 percent done.
CDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
Cons ci ratio: 2.462034e-02	ci left: 7.081598e-01	ci right 7.259136e-01	k: 7171	n:10000
KS ci ratio: 6.620037e-02	ci left: 2.509293e-01	ci right 2.682110e-01	k: 2595	n:10000
CDK1   10000 perm   1 sec   (7758 perm/sec)   p_kst 2.595000e-01   p_cons 7.171000e-01   p_joint 5.599000e-01

Outputting figure to mutsig2_images.part000000000035/CDK1.2_934_10000_0.2595_0.7171_0.5599.png
                gene_name: CDK1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
CDK14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
Cons ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
KS ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
CDK14   10000 perm   1 sec   (7428 perm/sec)   p_kst 7.814000e-01   p_cons 5.272000e-01   p_joint 9.459000e-01

Outputting figure to mutsig2_images.part000000000035/CDK14.2_1408_10000_0.7814_0.5272_0.9459.png
                gene_name: CDK14
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 77 percent done.
CDK19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
Cons ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
KS ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
CDK19   10000 perm   1 sec   (7662 perm/sec)   p_kst 3.412000e-01   p_cons 4.300000e-03   p_joint 2.450000e-02

Joint ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
Cons ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
KS ci ratio: 3.883536e-02	ci left: 3.308959e-01	ci right 3.440514e-01	k: 6749	n:20000
CDK19   20000 perm   3 sec   (6735 perm/sec)   p_kst 3.374500e-01   p_cons 4.400000e-03   p_joint 1.970000e-02

Joint ci ratio: 1.763658e-01	ci left: 1.476989e-02	ci right 1.765824e-02	k: 485	n:30000
Cons ci ratio: 3.571231e-01	ci left: 3.287119e-03	ci right 4.744855e-03	k: 119	n:30000
KS ci ratio: 3.175389e-02	ci left: 3.314845e-01	ci right 3.422138e-01	k: 10105	n:30000
CDK19   30000 perm   5 sec   (6324 perm/sec)   p_kst 3.368333e-01   p_cons 3.966667e-03   p_joint 1.616667e-02

Joint ci ratio: 1.811182e-01	ci left: 1.052598e-02	ci right 1.264582e-02	k: 462	n:40000
Cons ci ratio: 3.173454e-01	ci left: 3.197791e-03	ci right 4.425976e-03	k: 151	n:40000
KS ci ratio: 2.760722e-02	ci left: 3.304738e-01	ci right 3.397501e-01	k: 13404	n:40000
CDK19   40000 perm   7 sec   (6091 perm/sec)   p_kst 3.351000e-01   p_cons 3.775000e-03   p_joint 1.155000e-02

Joint ci ratio: 2.472995e-01	ci left: 4.381872e-03	ci right 5.636657e-03	k: 249	n:50000
Cons ci ratio: 2.892411e-01	ci left: 3.131130e-03	ci right 4.207761e-03	k: 182	n:50000
KS ci ratio: 2.471400e-02	ci left: 3.305834e-01	ci right 3.388757e-01	k: 16736	n:50000
CDK19   50000 perm   8 sec   (5940 perm/sec)   p_kst 3.347200e-01   p_cons 3.640000e-03   p_joint 4.980000e-03

Joint ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
Cons ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
KS ci ratio: 2.251215e-02	ci left: 3.319045e-01	ci right 3.394781e-01	k: 20141	n:60000
CDK19   60000 perm   10 sec   (5801 perm/sec)   p_kst 3.356833e-01   p_cons 3.400000e-03   p_joint 3.400000e-03

Joint ci ratio: 2.494888e-01	ci left: 3.076054e-03	ci right 3.965884e-03	k: 245	n:70000
Cons ci ratio: 2.494888e-01	ci left: 3.076054e-03	ci right 3.965884e-03	k: 245	n:70000
KS ci ratio: 2.082219e-02	ci left: 3.326146e-01	ci right 3.396275e-01	k: 23528	n:70000
CDK19   70000 perm   12 sec   (5676 perm/sec)   p_kst 3.361143e-01   p_cons 3.500000e-03   p_joint 3.500000e-03

Joint ci ratio: 2.351204e-01	ci left: 3.055533e-03	ci right 3.881122e-03	k: 276	n:80000
Cons ci ratio: 2.351204e-01	ci left: 3.055533e-03	ci right 3.881122e-03	k: 276	n:80000
KS ci ratio: 1.946771e-02	ci left: 3.330633e-01	ci right 3.396235e-01	k: 26907	n:80000
CDK19   80000 perm   14 sec   (5555 perm/sec)   p_kst 3.363375e-01   p_cons 3.450000e-03   p_joint 3.450000e-03

Joint ci ratio: 2.194328e-01	ci left: 3.145692e-03	ci right 3.931288e-03	k: 317	n:90000
Cons ci ratio: 2.194328e-01	ci left: 3.145692e-03	ci right 3.931288e-03	k: 317	n:90000
KS ci ratio: 1.838155e-02	ci left: 3.325924e-01	ci right 3.387738e-01	k: 30211	n:90000
CDK19   90000 perm   17 sec   (5447 perm/sec)   p_kst 3.356778e-01   p_cons 3.522222e-03   p_joint 3.522222e-03

Joint ci ratio: 2.065170e-01	ci left: 3.219284e-03	ci right 3.969963e-03	k: 358	n:100000
Cons ci ratio: 2.065170e-01	ci left: 3.219284e-03	ci right 3.969963e-03	k: 358	n:100000
KS ci ratio: 1.742650e-02	ci left: 3.330523e-01	ci right 3.389172e-01	k: 33598	n:100000
CDK19   100000 perm   19 sec   (5338 perm/sec)   p_kst 3.359800e-01   p_cons 3.580000e-03   p_joint 3.580000e-03

Joint ci ratio: 1.966316e-01	ci left: 3.246020e-03	ci right 3.962363e-03	k: 395	n:110000
Cons ci ratio: 1.966316e-01	ci left: 3.246020e-03	ci right 3.962363e-03	k: 395	n:110000
KS ci ratio: 1.660330e-02	ci left: 3.335170e-01	ci right 3.391099e-01	k: 36994	n:110000
CDK19   110000 perm   21 sec   (5242 perm/sec)   p_kst 3.363091e-01   p_cons 3.590909e-03   p_joint 3.590909e-03

Joint ci ratio: 1.884796e-01	ci left: 3.253130e-03	ci right 3.937872e-03	k: 430	n:120000
Cons ci ratio: 1.884796e-01	ci left: 3.253130e-03	ci right 3.937872e-03	k: 430	n:120000
KS ci ratio: 1.587961e-02	ci left: 3.341091e-01	ci right 3.394654e-01	k: 40414	n:120000
CDK19   120000 perm   23 sec   (5147 perm/sec)   p_kst 3.367833e-01   p_cons 3.583333e-03   p_joint 3.583333e-03

Joint ci ratio: 1.836525e-01	ci left: 3.171559e-03	ci right 3.820130e-03	k: 453	n:130000
Cons ci ratio: 1.836525e-01	ci left: 3.171559e-03	ci right 3.820130e-03	k: 453	n:130000
KS ci ratio: 1.526818e-02	ci left: 3.338775e-01	ci right 3.390221e-01	k: 43738	n:130000
CDK19   130000 perm   26 sec   (5048 perm/sec)   p_kst 3.364462e-01   p_cons 3.484615e-03   p_joint 3.484615e-03

Joint ci ratio: 1.751697e-01	ci left: 3.252031e-03	ci right 3.883091e-03	k: 498	n:140000
Cons ci ratio: 1.751697e-01	ci left: 3.252031e-03	ci right 3.883091e-03	k: 498	n:140000
KS ci ratio: 1.471738e-02	ci left: 3.338322e-01	ci right 3.387889e-01	k: 47083	n:140000
CDK19   140000 perm   28 sec   (4960 perm/sec)   p_kst 3.363071e-01   p_cons 3.557143e-03   p_joint 3.557143e-03

Joint ci ratio: 1.694916e-01	ci left: 3.252120e-03	ci right 3.860651e-03	k: 532	n:150000
Cons ci ratio: 1.694916e-01	ci left: 3.252120e-03	ci right 3.860651e-03	k: 532	n:150000
KS ci ratio: 1.421519e-02	ci left: 3.340155e-01	ci right 3.388042e-01	k: 50461	n:150000
CDK19   150000 perm   31 sec   (4873 perm/sec)   p_kst 3.364067e-01   p_cons 3.546667e-03   p_joint 3.546667e-03

Joint ci ratio: 1.638975e-01	ci left: 3.270470e-03	ci right 3.860245e-03	k: 569	n:160000
Cons ci ratio: 1.638975e-01	ci left: 3.270470e-03	ci right 3.860245e-03	k: 569	n:160000
KS ci ratio: 1.376440e-02	ci left: 3.340723e-01	ci right 3.387086e-01	k: 53822	n:160000
CDK19   160000 perm   33 sec   (4793 perm/sec)   p_kst 3.363875e-01   p_cons 3.556250e-03   p_joint 3.556250e-03

Joint ci ratio: 1.594837e-01	ci left: 3.258707e-03	ci right 3.829019e-03	k: 601	n:170000
Cons ci ratio: 1.594837e-01	ci left: 3.258707e-03	ci right 3.829019e-03	k: 601	n:170000
KS ci ratio: 1.334902e-02	ci left: 3.342890e-01	ci right 3.387872e-01	k: 57211	n:170000
CDK19   170000 perm   36 sec   (4715 perm/sec)   p_kst 3.365353e-01   p_cons 3.535294e-03   p_joint 3.535294e-03

Joint ci ratio: 1.549186e-01	ci left: 3.269802e-03	ci right 3.824155e-03	k: 637	n:180000
Cons ci ratio: 1.549186e-01	ci left: 3.269802e-03	ci right 3.824155e-03	k: 637	n:180000
KS ci ratio: 1.297993e-02	ci left: 3.341118e-01	ci right 3.384824e-01	k: 60533	n:180000
CDK19   180000 perm   39 sec   (4644 perm/sec)   p_kst 3.362944e-01   p_cons 3.538889e-03   p_joint 3.538889e-03

Joint ci ratio: 1.503888e-01	ci left: 3.295134e-03	ci right 3.835977e-03	k: 676	n:190000
Cons ci ratio: 1.503888e-01	ci left: 3.295134e-03	ci right 3.835977e-03	k: 676	n:190000
KS ci ratio: 1.263314e-02	ci left: 3.341913e-01	ci right 3.384453e-01	k: 63900	n:190000
CDK19   190000 perm   42 sec   (4573 perm/sec)   p_kst 3.363158e-01   p_cons 3.557895e-03   p_joint 3.557895e-03

Joint ci ratio: 1.897218e-01	ci left: 1.927934e-03	ci right 2.336712e-03	k: 425	n:200000
Cons ci ratio: 1.467496e-01	ci left: 3.294058e-03	ci right 3.820493e-03	k: 710	n:200000
KS ci ratio: 1.231301e-02	ci left: 3.342543e-01	ci right 3.384004e-01	k: 67265	n:200000
CDK19   200000 perm   44 sec   (4502 perm/sec)   p_kst 3.363250e-01   p_cons 3.550000e-03   p_joint 2.125000e-03

Joint ci ratio: 1.852118e-01	ci left: 1.931435e-03	ci right 2.330127e-03	k: 446	n:210000
Cons ci ratio: 1.437502e-01	ci left: 3.274861e-03	ci right 3.786613e-03	k: 740	n:210000
KS ci ratio: 1.201093e-02	ci left: 3.345027e-01	ci right 3.385494e-01	k: 70670	n:210000
CDK19   210000 perm   47 sec   (4432 perm/sec)   p_kst 3.365238e-01   p_cons 3.523810e-03   p_joint 2.123810e-03

Joint ci ratio: 1.798571e-01	ci left: 1.960765e-03	ci right 2.352537e-03	k: 473	n:220000
Cons ci ratio: 1.391280e-01	ci left: 3.345243e-03	ci right 3.849793e-03	k: 790	n:220000
KS ci ratio: 1.172813e-02	ci left: 3.348023e-01	ci right 3.387566e-01	k: 74091	n:220000
CDK19   220000 perm   50 sec   (4361 perm/sec)   p_kst 3.367773e-01   p_cons 3.590909e-03   p_joint 2.150000e-03

Joint ci ratio: 1.747667e-01	ci left: 1.991854e-03	ci right 2.377385e-03	k: 501	n:230000
Cons ci ratio: 1.354919e-01	ci left: 3.380337e-03	ci right 3.875780e-03	k: 833	n:230000
KS ci ratio: 1.147188e-02	ci left: 3.347859e-01	ci right 3.386530e-01	k: 77445	n:230000
CDK19   230000 perm   54 sec   (4295 perm/sec)   p_kst 3.367174e-01   p_cons 3.621739e-03   p_joint 2.178261e-03

Joint ci ratio: 1.713867e-01	ci left: 1.988584e-03	ci right 2.365267e-03	k: 521	n:240000
Cons ci ratio: 1.328124e-01	ci left: 3.376401e-03	ci right 3.860709e-03	k: 867	n:240000
KS ci ratio: 1.123109e-02	ci left: 3.347967e-01	ci right 3.385822e-01	k: 80805	n:240000
CDK19   240000 perm   57 sec   (4231 perm/sec)   p_kst 3.366875e-01   p_cons 3.612500e-03   p_joint 2.170833e-03

Joint ci ratio: 1.688209e-01	ci left: 1.970314e-03	ci right 2.337381e-03	k: 537	n:250000
Cons ci ratio: 1.306497e-01	ci left: 3.353520e-03	ci right 3.826104e-03	k: 896	n:250000
KS ci ratio: 1.100003e-02	ci left: 3.350032e-01	ci right 3.387126e-01	k: 84214	n:250000
CDK19   250000 perm   60 sec   (4170 perm/sec)   p_kst 3.368560e-01   p_cons 3.584000e-03   p_joint 2.148000e-03

Joint ci ratio: 1.659174e-01	ci left: 1.964548e-03	ci right 2.323617e-03	k: 556	n:260000
Cons ci ratio: 1.281043e-01	ci left: 3.358519e-03	ci right 3.821886e-03	k: 932	n:260000
KS ci ratio: 1.079056e-02	ci left: 3.348680e-01	ci right 3.385048e-01	k: 87538	n:260000
CDK19   260000 perm   63 sec   (4111 perm/sec)   p_kst 3.366846e-01   p_cons 3.584615e-03   p_joint 2.138462e-03

Joint ci ratio: 1.620349e-01	ci left: 1.987686e-03	ci right 2.341655e-03	k: 583	n:270000
Cons ci ratio: 1.254426e-01	ci left: 3.377581e-03	ci right 3.833176e-03	k: 972	n:270000
KS ci ratio: 1.058849e-02	ci left: 3.349174e-01	ci right 3.384862e-01	k: 90909	n:270000
CDK19   270000 perm   67 sec   (4053 perm/sec)   p_kst 3.367000e-01   p_cons 3.600000e-03   p_joint 2.159259e-03

Joint ci ratio: 1.577672e-01	ci left: 2.026413e-03	ci right 2.376875e-03	k: 615	n:280000
Cons ci ratio: 1.223956e-01	ci left: 3.426534e-03	ci right 3.876693e-03	k: 1021	n:280000
KS ci ratio: 1.039570e-02	ci left: 3.350351e-01	ci right 3.385397e-01	k: 94300	n:280000
CDK19   280000 perm   70 sec   (3998 perm/sec)   p_kst 3.367857e-01   p_cons 3.646429e-03   p_joint 2.196429e-03

Joint ci ratio: 1.200111e-01	ci left: 3.445473e-03	ci right 3.888675e-03	k: 1062	n:290000
Cons ci ratio: 1.200111e-01	ci left: 3.445473e-03	ci right 3.888675e-03	k: 1062	n:290000
KS ci ratio: 1.021354e-02	ci left: 3.351246e-01	ci right 3.385683e-01	k: 97685	n:290000
CDK19   290000 perm   74 sec   (3942 perm/sec)   p_kst 3.368448e-01   p_cons 3.662069e-03   p_joint 3.662069e-03

Joint ci ratio: 1.182454e-01	ci left: 3.434111e-03	ci right 3.868898e-03	k: 1094	n:300000
Cons ci ratio: 1.182454e-01	ci left: 3.434111e-03	ci right 3.868898e-03	k: 1094	n:300000
KS ci ratio: 1.003801e-02	ci left: 3.353251e-01	ci right 3.387114e-01	k: 101105	n:300000
CDK19   300000 perm   77 sec   (3888 perm/sec)   p_kst 3.370167e-01   p_cons 3.646667e-03   p_joint 3.646667e-03

Joint ci ratio: 1.164518e-01	ci left: 3.429791e-03	ci right 3.856991e-03	k: 1128	n:310000
Cons ci ratio: 1.164518e-01	ci left: 3.429791e-03	ci right 3.856991e-03	k: 1128	n:310000
KS ci ratio: 9.883715e-03	ci left: 3.349493e-01	ci right 3.382795e-01	k: 104350	n:310000
CDK19   310000 perm   81 sec   (3835 perm/sec)   p_kst 3.366129e-01   p_cons 3.638710e-03   p_joint 3.638710e-03

Joint ci ratio: 1.145398e-01	ci left: 3.437930e-03	ci right 3.858638e-03	k: 1166	n:320000
Cons ci ratio: 1.145398e-01	ci left: 3.437930e-03	ci right 3.858638e-03	k: 1166	n:320000
KS ci ratio: 9.730382e-03	ci left: 3.348690e-01	ci right 3.381464e-01	k: 107682	n:320000
CDK19   320000 perm   85 sec   (3784 perm/sec)   p_kst 3.365063e-01   p_cons 3.643750e-03   p_joint 3.643750e-03

Joint ci ratio: 1.130018e-01	ci left: 3.427959e-03	ci right 3.841439e-03	k: 1198	n:330000
Cons ci ratio: 1.130018e-01	ci left: 3.427959e-03	ci right 3.841439e-03	k: 1198	n:330000
KS ci ratio: 9.582539e-03	ci left: 3.348605e-01	ci right 3.380878e-01	k: 111036	n:330000
CDK19   330000 perm   88 sec   (3735 perm/sec)   p_kst 3.364727e-01   p_cons 3.630303e-03   p_joint 3.630303e-03

Joint ci ratio: 1.109825e-01	ci left: 3.452926e-03	ci right 3.861488e-03	k: 1242	n:340000
Cons ci ratio: 1.109825e-01	ci left: 3.452926e-03	ci right 3.861488e-03	k: 1242	n:340000
KS ci ratio: 9.442668e-03	ci left: 3.347853e-01	ci right 3.379645e-01	k: 114367	n:340000
CDK19   340000 perm   92 sec   (3687 perm/sec)   p_kst 3.363735e-01   p_cons 3.652941e-03   p_joint 3.652941e-03

Joint ci ratio: 1.091103e-01	ci left: 3.473749e-03	ci right 3.877395e-03	k: 1285	n:350000
Cons ci ratio: 1.091103e-01	ci left: 3.473749e-03	ci right 3.877395e-03	k: 1285	n:350000
KS ci ratio: 9.312084e-03	ci left: 3.345550e-01	ci right 3.376878e-01	k: 117642	n:350000
CDK19   350000 perm   96 sec   (3640 perm/sec)   p_kst 3.361200e-01   p_cons 3.671429e-03   p_joint 3.671429e-03

Joint ci ratio: 1.074515e-01	ci left: 3.485359e-03	ci right 3.883807e-03	k: 1325	n:360000
Cons ci ratio: 1.074515e-01	ci left: 3.485359e-03	ci right 3.883807e-03	k: 1325	n:360000
KS ci ratio: 9.180080e-03	ci left: 3.346623e-01	ci right 3.377514e-01	k: 121034	n:360000
CDK19   360000 perm   100 sec   (3591 perm/sec)   p_kst 3.362056e-01   p_cons 3.680556e-03   p_joint 3.680556e-03

Joint ci ratio: 1.059050e-01	ci left: 3.493753e-03	ci right 3.887055e-03	k: 1364	n:370000
Cons ci ratio: 1.059050e-01	ci left: 3.493753e-03	ci right 3.887055e-03	k: 1364	n:370000
KS ci ratio: 9.054303e-03	ci left: 3.347264e-01	ci right 3.377735e-01	k: 124412	n:370000
CDK19   370000 perm   104 sec   (3542 perm/sec)   p_kst 3.362486e-01   p_cons 3.686486e-03   p_joint 3.686486e-03

Joint ci ratio: 1.042745e-01	ci left: 3.511998e-03	ci right 3.900893e-03	k: 1407	n:380000
Cons ci ratio: 1.042745e-01	ci left: 3.511998e-03	ci right 3.900893e-03	k: 1407	n:380000
KS ci ratio: 8.938457e-03	ci left: 3.345428e-01	ci right 3.375491e-01	k: 127697	n:380000
CDK19   380000 perm   109 sec   (3496 perm/sec)   p_kst 3.360447e-01   p_cons 3.702632e-03   p_joint 3.702632e-03

Joint ci ratio: 1.026815e-01	ci left: 3.531849e-03	ci right 3.916608e-03	k: 1451	n:390000
Cons ci ratio: 1.026815e-01	ci left: 3.531849e-03	ci right 3.916608e-03	k: 1451	n:390000
KS ci ratio: 8.824916e-03	ci left: 3.344714e-01	ci right 3.374387e-01	k: 131022	n:390000
CDK19   390000 perm   113 sec   (3456 perm/sec)   p_kst 3.359538e-01   p_cons 3.720513e-03   p_joint 3.720513e-03

Joint ci ratio: 1.011933e-01	ci left: 3.548314e-03	ci right 3.928931e-03	k: 1494	n:400000
Cons ci ratio: 1.011933e-01	ci left: 3.548314e-03	ci right 3.928931e-03	k: 1494	n:400000
KS ci ratio: 8.714569e-03	ci left: 3.344563e-01	ci right 3.373861e-01	k: 134368	n:400000
CDK19   400000 perm   117 sec   (3415 perm/sec)   p_kst 3.359200e-01   p_cons 3.735000e-03   p_joint 3.735000e-03

Joint ci ratio: 9.983318e-02	ci left: 3.559257e-03	ci right 3.935615e-03	k: 1535	n:410000
Cons ci ratio: 9.983318e-02	ci left: 3.559257e-03	ci right 3.935615e-03	k: 1535	n:410000
KS ci ratio: 8.603227e-03	ci left: 3.347028e-01	ci right 3.375971e-01	k: 137821	n:410000
CDK19   410000 perm   121 sec   (3375 perm/sec)   p_kst 3.361488e-01   p_cons 3.743902e-03   p_joint 3.743902e-03

Outputting figure to mutsig2_images.part000000000035/CDK19.2_1561_410000_0.33615_0.0037439_0.0037439.png
                gene_name: CDK19
               theta_stop: 0.100 
                    nperm: 410000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0037 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0039 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0036 
    ci_joint_bounds_right: 0.0039 

Current progress: 79 percent done.
CDK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.342625e-02	ci left: 4.391176e-01	ci right 4.587122e-01	k: 4489	n:10000
KS ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
CDK4   10000 perm   1 sec   (7730 perm/sec)   p_kst 9.908000e-01   p_cons 4.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK4.2_940_10000_0.9908_0.4489_1.png
                gene_name: CDK4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CDK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 1.712913e-02	ci left: 8.323605e-01	ci right 8.468411e-01	k: 8397	n:10000
CDK9   10000 perm   1 sec   (7542 perm/sec)   p_kst 8.397000e-01   p_cons 5.240000e-02   p_joint 8.083000e-01

Joint ci ratio: 3.448479e-02	ci left: 3.856737e-01	ci right 3.992575e-01	k: 7849	n:20000
Cons ci ratio: 1.153940e-01	ci left: 5.139392e-02	ci right 5.773637e-02	k: 1090	n:20000
KS ci ratio: 1.219461e-02	ci left: 8.326677e-01	ci right 8.429339e-01	k: 16757	n:20000
CDK9   20000 perm   3 sec   (6629 perm/sec)   p_kst 8.378500e-01   p_cons 5.450000e-02   p_joint 3.924500e-01

Joint ci ratio: 2.782295e-02	ci left: 3.926207e-01	ci right 4.037323e-01	k: 11945	n:30000
Cons ci ratio: 9.466392e-02	ci left: 5.150162e-02	ci right 5.665183e-02	k: 1621	n:30000
KS ci ratio: 9.901070e-03	ci left: 8.351621e-01	ci right 8.435054e-01	k: 25181	n:30000
CDK9   30000 perm   5 sec   (6248 perm/sec)   p_kst 8.393667e-01   p_cons 5.403333e-02   p_joint 3.981667e-01

Outputting figure to mutsig2_images.part000000000035/CDK9.2_1147_30000_0.83937_0.054033_0.39817.png
                gene_name: CDK9
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 83 percent done.
CDKL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 85 percent done.
CDNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
CDNF   10000 perm   1 sec   (8020 perm/sec)   p_kst 3.480000e-01   p_cons 2.130000e-02   p_joint 6.570000e-02

Joint ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
Cons ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
KS ci ratio: 3.763756e-02	ci left: 3.449797e-01	ci right 3.582635e-01	k: 7032	n:20000
CDNF   20000 perm   3 sec   (6968 perm/sec)   p_kst 3.516000e-01   p_cons 2.415000e-02   p_joint 1.142500e-01

Joint ci ratio: 7.631701e-02	ci left: 7.774015e-02	ci right 8.394131e-02	k: 2424	n:30000
Cons ci ratio: 1.432069e-01	ci left: 2.261928e-02	ci right 2.614032e-02	k: 730	n:30000
KS ci ratio: 3.073204e-02	ci left: 3.461949e-01	ci right 3.570338e-01	k: 10548	n:30000
CDNF   30000 perm   5 sec   (6612 perm/sec)   p_kst 3.516000e-01   p_cons 2.433333e-02   p_joint 8.080000e-02

Joint ci ratio: 5.485138e-02	ci left: 1.101107e-01	ci right 1.163456e-01	k: 4528	n:40000
Cons ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
KS ci ratio: 2.662980e-02	ci left: 3.466701e-01	ci right 3.560515e-01	k: 14054	n:40000
CDNF   40000 perm   6 sec   (6384 perm/sec)   p_kst 3.513500e-01   p_cons 2.457500e-02   p_joint 1.132000e-01

Joint ci ratio: 4.928304e-02	ci left: 1.095451e-01	ci right 1.151000e-01	k: 5615	n:50000
Cons ci ratio: 1.105722e-01	ci left: 2.316260e-02	ci right 2.589299e-02	k: 1225	n:50000
KS ci ratio: 2.384011e-02	ci left: 3.467554e-01	ci right 3.551419e-01	k: 17547	n:50000
CDNF   50000 perm   8 sec   (6201 perm/sec)   p_kst 3.509400e-01   p_cons 2.450000e-02   p_joint 1.123000e-01

Joint ci ratio: 4.488115e-02	ci left: 1.102627e-01	ci right 1.153415e-01	k: 6767	n:60000
Cons ci ratio: 1.014770e-01	ci left: 2.303389e-02	ci right 2.551242e-02	k: 1455	n:60000
KS ci ratio: 2.169591e-02	ci left: 3.485265e-01	ci right 3.561877e-01	k: 21141	n:60000
CDNF   60000 perm   10 sec   (6030 perm/sec)   p_kst 3.523500e-01   p_cons 2.425000e-02   p_joint 1.127833e-01

Joint ci ratio: 4.117665e-02	ci left: 1.122633e-01	ci right 1.169973e-01	k: 8023	n:70000
Cons ci ratio: 9.436790e-02	ci left: 2.292071e-02	ci right 2.520469e-02	k: 1683	n:70000
KS ci ratio: 2.013544e-02	ci left: 3.477057e-01	ci right 3.547924e-01	k: 24587	n:70000
CDNF   70000 perm   12 sec   (5885 perm/sec)   p_kst 3.512429e-01   p_cons 2.404286e-02   p_joint 1.146143e-01

Outputting figure to mutsig2_images.part000000000035/CDNF.2_580_70000_0.35124_0.024043_0.11461.png
                gene_name: CDNF
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 87 percent done.
CDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
CDS1   10000 perm   1 sec   (7459 perm/sec)   p_kst 2.318000e-01   p_cons 2.391000e-01   p_joint 5.913000e-01

Outputting figure to mutsig2_images.part000000000035/CDS1.2_1438_10000_0.2318_0.2391_0.5913.png
                gene_name: CDS1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 88 percent done.
CDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
CDT1   10000 perm   1 sec   (7222 perm/sec)   p_kst 2.168000e-01   p_cons 1.481000e-01   p_joint 2.129000e-01

Outputting figure to mutsig2_images.part000000000035/CDT1.2_1681_10000_0.2168_0.1481_0.2129.png
                gene_name: CDT1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 90 percent done.
CEACAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
KS ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
CEACAM1   10000 perm   1 sec   (7346 perm/sec)   p_kst 1.870000e-01   p_cons 4.746000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM1.2_1714_10000_0.187_0.4746_0.5652.png
                gene_name: CEACAM1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 92 percent done.
CEACAM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
KS ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
CEACAM19   10000 perm   1 sec   (8014 perm/sec)   p_kst 8.997000e-01   p_cons 4.200000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM19.2_935_10000_0.8997_0.42_1.png
                gene_name: CEACAM19
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CEACAM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
Cons ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
KS ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
CEACAM3   10000 perm   1 sec   (8158 perm/sec)   p_kst 5.676000e-01   p_cons 3.382000e-01   p_joint 4.899000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM3.2_787_10000_0.5676_0.3382_0.4899.png
                gene_name: CEACAM3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 96 percent done.
CEACAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
CEACAM7   10000 perm   1 sec   (8096 perm/sec)   p_kst 3.913000e-01   p_cons 9.864000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM7.2_814_10000_0.3913_0.9864_0.6713.png
                gene_name: CEACAM7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 98 percent done.
CEACAM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
Cons ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
KS ci ratio: 1.754076e-02	ci left: 8.257465e-01	ci right 8.404589e-01	k: 8332	n:10000
CEACAM8   10000 perm   1 sec   (7599 perm/sec)   p_kst 8.332000e-01   p_cons 5.900000e-02   p_joint 1.032000e-01

Joint ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
Cons ci ratio: 1.069866e-01	ci left: 5.952524e-02	ci right 6.630252e-02	k: 1257	n:20000
KS ci ratio: 1.249175e-02	ci left: 8.259357e-01	ci right 8.363678e-01	k: 16624	n:20000
CEACAM8   20000 perm   3 sec   (6731 perm/sec)   p_kst 8.312000e-01   p_cons 6.285000e-02   p_joint 1.060000e-01

Joint ci ratio: 3.041343e-02	ci left: 3.509447e-01	ci right 3.618165e-01	k: 10691	n:30000
Cons ci ratio: 8.797837e-02	ci left: 5.932961e-02	ci right 6.482224e-02	k: 1861	n:30000
KS ci ratio: 1.016417e-02	ci left: 8.278889e-01	ci right 8.363800e-01	k: 24965	n:30000
CEACAM8   30000 perm   5 sec   (6373 perm/sec)   p_kst 8.321667e-01   p_cons 6.203333e-02   p_joint 3.563667e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM8.2_1070_30000_0.83217_0.062033_0.35637.png
                gene_name: CEACAM8
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000035
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 35 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 4421817: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000036> was used as the working directory.
Started at Wed Oct 24 17:35:30 2012
Results reported at Wed Oct 24 20:45:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000036.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000036.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 36  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000036.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11531.22 sec.
    Max Memory :      5358 MB
    Max Swap   :      7864 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
36
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 36
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 36: processing genes 3167 - 3257
Calculating significance of each gene.
Using projection method.
In gene CEBPZ the following bins exceed PROBCAP:
    LUAD-75-6205-TP	categ 6	N = 3229    n = 1	mu =   1.67e-07
3167	CEBPZ	2.664690e-01
3168	CECR1	5.015859e-01
3169	CECR2	8.629608e-01
3170	CECR5	1
3171	CECR6	6.677942e-01
3172	CEL	7.756031e-01
3173	CELA1	5.234425e-01
3174	CELA2A	2.764777e-01
3175	CELA2B	7.970895e-01
3176	CELA3A	1.744644e-01
3177	CELA3B	7.836223e-01
3178	CELF1	2.374004e-01
3179	CELF2	6.534887e-01
3180	CELF3	5.418996e-01
3181	CELF4	4.329379e-01
3182	CELF5	5.764940e-01
3183	CELF6	1
3184	CELSR1	9.973253e-01
3185	CELSR2	1
3186	CELSR3	9.516410e-01
3187	CEMP1	1
3188	CEND1	1
3189	CENPA	5.142332e-02
3190	CENPB	1
3191	CENPBD1	1
In gene CENPC1 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 2099    n = 1	mu =   6.02e-07
3192	CENPC1	4.463642e-01
3193	CENPE	1
3194	CENPF	8.594738e-01
3195	CENPH	1.602573e-01
3196	CENPI	2.152174e-01
3197	CENPJ	9.587484e-01
3198	CENPK	3.226466e-01
3199	CENPL	3.474273e-01
3200	CENPM	1
3201	CENPN	8.034579e-01
3202	CENPO	8.744979e-01
3203	CENPP	6.468930e-01
3204	CENPQ	5.723030e-01
3205	CENPT	1
3206	CENPV	1
3207	CENPW	1
3208	CEP110	9.999841e-01
3209	CEP120	9.585316e-01
3210	CEP135	9.791194e-01
3211	CEP152	9.765204e-01
3212	CEP164	9.980041e-01
3213	CEP170	9.442655e-01
3214	CEP192	9.967611e-01
3215	CEP250	8.098820e-01
3216	CEP290	7.236311e-01
3217	CEP350	9.994719e-01
3218	CEP55	5.127363e-01
3219	CEP57	7.942303e-01
3220	CEP63	1
3221	CEP68	8.901365e-01
3222	CEP70	9.616264e-01
3223	CEP72	1
3224	CEP76	4.600469e-01
3225	CEP78	1
3226	CEP97	9.700660e-01
3227	CEPT1	1
3228	CER1	3.644911e-01
3229	CERCAM	8.866602e-01
3230	CERK	6.460290e-01
3231	CERKL	2.588425e-01
3232	CES1	1
3233	CES2	9.707908e-01
3234	CES3	9.382965e-01
3235	CES7	5.923993e-02
3236	CES8	8.465877e-01
3237	CETN1	6.871913e-02
3238	CETN2	3.458470e-01
3239	CETN3	2.746334e-01
3240	CETP	7.410816e-01
3241	CFB	9.726563e-01
3242	CFD	1
3243	CFDP1	8.146345e-01
3244	CFH	2.931962e-01
3245	CFHR1	3.864191e-01
3246	CFHR2	6.294061e-02
3247	CFHR3	9.962315e-02
3248	CFHR4	1.111323e-02
3249	CFHR5	3.615192e-03
3250	CFI	1.221446e-01
3251	CFL1	1
3252	CFL2	7.969544e-02
3253	CFLAR	1
3254	CFP	3.270491e-01
3255	CFTR	9.670986e-01
3256	CGA	1
3257	CGB	1
Done

Running MutSig 2:
Scatter job 36: processing genes 3167 - 3257
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CENPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
Cons ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
KS ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
CENPF   10000 perm   3 sec   (2879 perm/sec)   p_kst 1.605000e-01   p_cons 5.362000e-01   p_joint 2.360000e-01

Outputting figure to mutsig2_images.part000000000036/CENPF.33_9421_10000_0.1605_0.5362_0.236.png
                gene_name: CENPF
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
CFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.966016e-02	ci left: 2.320511e-01	ci right 2.489003e-01	k: 2404	n:10000
Cons ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
KS ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
CFH   10000 perm   2 sec   (4256 perm/sec)   p_kst 2.071000e-01   p_cons 3.908000e-01   p_joint 2.404000e-01

Outputting figure to mutsig2_images.part000000000036/CFH.23_3802_10000_0.2071_0.3908_0.2404.png
                gene_name: CFH
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 3 percent done.
CELSR3
Processing conservation and coverage...
99% 
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
Cons ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
KS ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
CELSR3   10000 perm   3 sec   (3250 perm/sec)   p_kst 5.793000e-01   p_cons 4.499000e-01   p_joint 6.976000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR3.13_10079_10000_0.5793_0.4499_0.6976.png
                gene_name: CELSR3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 5 percent done.
CEP192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.126095e-02	ci left: 7.643573e-01	ci right 7.808836e-01	k: 7727	n:10000
Cons ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
KS ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
CEP192   10000 perm   3 sec   (3549 perm/sec)   p_kst 6.519000e-01   p_cons 4.867000e-01   p_joint 7.727000e-01

Outputting figure to mutsig2_images.part000000000036/CEP192.13_7790_10000_0.6519_0.4867_0.7727.png
                gene_name: CEP192
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 6 percent done.
CEP350
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
CEP350   10000 perm   3 sec   (3535 perm/sec)   p_kst 1.351000e-01   p_cons 2.450000e-02   p_joint 3.570000e-02

Joint ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
Cons ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
KS ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
CEP350   20000 perm   6 sec   (3243 perm/sec)   p_kst 1.322000e-01   p_cons 2.385000e-02   p_joint 3.330000e-02

Joint ci ratio: 1.191303e-01	ci left: 3.275459e-02	ci right 3.693612e-02	k: 1044	n:30000
Cons ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
KS ci ratio: 5.785045e-02	ci left: 1.288801e-01	ci right 1.365912e-01	k: 3981	n:30000
CEP350   30000 perm   10 sec   (3148 perm/sec)   p_kst 1.327000e-01   p_cons 2.383333e-02   p_joint 3.480000e-02

Joint ci ratio: 1.050734e-01	ci left: 3.185552e-02	ci right 3.541260e-02	k: 1344	n:40000
Cons ci ratio: 1.247226e-01	ci left: 2.259499e-02	ci right 2.562464e-02	k: 963	n:40000
KS ci ratio: 5.047529e-02	ci left: 1.277079e-01	ci right 1.343458e-01	k: 5240	n:40000
CEP350   40000 perm   13 sec   (3049 perm/sec)   p_kst 1.310000e-01   p_cons 2.407500e-02   p_joint 3.360000e-02

Joint ci ratio: 1.032125e-01	ci left: 2.659093e-02	ci right 2.950421e-02	k: 1401	n:50000
Cons ci ratio: 1.124189e-01	ci left: 2.240385e-02	ci right 2.509183e-02	k: 1186	n:50000
KS ci ratio: 4.529885e-02	ci left: 1.273014e-01	ci right 1.332216e-01	k: 6512	n:50000
CEP350   50000 perm   17 sec   (3001 perm/sec)   p_kst 1.302400e-01   p_cons 2.372000e-02   p_joint 2.802000e-02

Joint ci ratio: 9.293197e-02	ci left: 2.746000e-02	ci right 3.015250e-02	k: 1727	n:60000
Cons ci ratio: 1.021986e-01	ci left: 2.270885e-02	ci right 2.517082e-02	k: 1435	n:60000
KS ci ratio: 4.136605e-02	ci left: 1.274839e-01	ci right 1.328853e-01	k: 7810	n:60000
CEP350   60000 perm   20 sec   (2960 perm/sec)   p_kst 1.301667e-01   p_cons 2.391667e-02   p_joint 2.878333e-02

Joint ci ratio: 8.841490e-02	ci left: 2.610531e-02	ci right 2.853409e-02	k: 1911	n:70000
Cons ci ratio: 9.488881e-02	ci left: 2.266951e-02	ci right 2.494163e-02	k: 1665	n:70000
KS ci ratio: 3.825373e-02	ci left: 1.279420e-01	ci right 1.329459e-01	k: 9130	n:70000
CEP350   70000 perm   24 sec   (2895 perm/sec)   p_kst 1.304286e-01   p_cons 2.378571e-02   p_joint 2.730000e-02

Outputting figure to mutsig2_images.part000000000036/CEP350.13_9502_70000_0.13043_0.023786_0.0273.png
                gene_name: CEP350
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 8 percent done.
CENPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
Cons ci ratio: 2.636551e-02	ci left: 6.793193e-01	ci right 6.975708e-01	k: 6885	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
CENPE   10000 perm   3 sec   (3818 perm/sec)   p_kst 1.340000e-02   p_cons 6.885000e-01   p_joint 7.580000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 1.875907e-02	ci left: 6.793653e-01	ci right 6.922806e-01	k: 13717	n:20000
KS ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
CENPE   20000 perm   6 sec   (3509 perm/sec)   p_kst 1.395000e-02   p_cons 6.858500e-01   p_joint 3.690000e-02

Joint ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
Cons ci ratio: 1.476070e-02	ci left: 6.963529e-01	ci right 7.067414e-01	k: 21047	n:30000
KS ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
CENPE   30000 perm   9 sec   (3390 perm/sec)   p_kst 1.423333e-02   p_cons 7.015667e-01   p_joint 5.533333e-02

Joint ci ratio: 8.191495e-02	ci left: 5.192758e-02	ci right 5.638742e-02	k: 2165	n:40000
Cons ci ratio: 1.281271e-02	ci left: 6.960848e-01	ci right 7.050861e-01	k: 28024	n:40000
KS ci ratio: 1.656890e-01	ci left: 1.265568e-02	ci right 1.496570e-02	k: 551	n:40000
CENPE   40000 perm   12 sec   (3309 perm/sec)   p_kst 1.377500e-02   p_cons 7.006000e-01   p_joint 5.412500e-02

Joint ci ratio: 9.742943e-02	ci left: 2.983005e-02	ci right 3.290468e-02	k: 1567	n:50000
Cons ci ratio: 1.143658e-02	ci left: 6.974273e-01	ci right 7.054693e-01	k: 35073	n:50000
KS ci ratio: 1.533496e-01	ci left: 1.191002e-02	ci right 1.390713e-02	k: 644	n:50000
CENPE   50000 perm   15 sec   (3249 perm/sec)   p_kst 1.288000e-02   p_cons 7.014600e-01   p_joint 3.134000e-02

Joint ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
Cons ci ratio: 1.065187e-02	ci left: 6.892750e-01	ci right 6.966730e-01	k: 41579	n:60000
KS ci ratio: 1.412888e-01	ci left: 1.177106e-02	ci right 1.357653e-02	k: 759	n:60000
CENPE   60000 perm   19 sec   (3198 perm/sec)   p_kst 1.265000e-02   p_cons 6.929833e-01   p_joint 2.091667e-02

Joint ci ratio: 9.832922e-02	ci left: 2.110731e-02	ci right 2.330397e-02	k: 1553	n:70000
Cons ci ratio: 9.849754e-03	ci left: 6.900695e-01	ci right 6.969144e-01	k: 48545	n:70000
KS ci ratio: 1.310829e-01	ci left: 1.178682e-02	ci right 1.345394e-02	k: 882	n:70000
CENPE   70000 perm   22 sec   (3150 perm/sec)   p_kst 1.260000e-02   p_cons 6.935000e-01   p_joint 2.218571e-02

Joint ci ratio: 8.478461e-02	ci left: 2.492048e-02	ci right 2.713908e-02	k: 2081	n:80000
Cons ci ratio: 9.379757e-03	ci left: 6.826205e-01	ci right 6.890660e-01	k: 54868	n:80000
KS ci ratio: 1.233083e-01	ci left: 1.170522e-02	ci right 1.325543e-02	k: 997	n:80000
CENPE   80000 perm   26 sec   (3106 perm/sec)   p_kst 1.246250e-02   p_cons 6.858500e-01   p_joint 2.601250e-02

Joint ci ratio: 8.984961e-02	ci left: 1.977973e-02	ci right 2.165134e-02	k: 1863	n:90000
Cons ci ratio: 8.841161e-03	ci left: 6.829118e-01	ci right 6.889874e-01	k: 61736	n:90000
KS ci ratio: 1.165588e-01	ci left: 1.168721e-02	ci right 1.314447e-02	k: 1116	n:90000
CENPE   90000 perm   29 sec   (3062 perm/sec)   p_kst 1.240000e-02   p_cons 6.859556e-01   p_joint 2.070000e-02

Joint ci ratio: 8.191054e-02	ci left: 2.147210e-02	ci right 2.331575e-02	k: 2238	n:100000
Cons ci ratio: 8.386603e-03	ci left: 6.831131e-01	ci right 6.888761e-01	k: 68600	n:100000
KS ci ratio: 1.101787e-01	ci left: 1.181083e-02	ci right 1.319766e-02	k: 1249	n:100000
CENPE   100000 perm   33 sec   (3020 perm/sec)   p_kst 1.249000e-02   p_cons 6.860000e-01   p_joint 2.238000e-02

Joint ci ratio: 7.890365e-02	ci left: 2.107884e-02	ci right 2.281922e-02	k: 2413	n:110000
Cons ci ratio: 8.012013e-03	ci left: 6.824004e-01	ci right 6.878989e-01	k: 75367	n:110000
KS ci ratio: 1.048199e-01	ci left: 1.189605e-02	ci right 1.322075e-02	k: 1380	n:110000
CENPE   110000 perm   37 sec   (2982 perm/sec)   p_kst 1.254545e-02   p_cons 6.851545e-01   p_joint 2.193636e-02

Joint ci ratio: 7.412451e-02	ci left: 2.193012e-02	ci right 2.362639e-02	k: 2732	n:120000
Cons ci ratio: 7.666114e-03	ci left: 6.827891e-01	ci right 6.880519e-01	k: 82251	n:120000
KS ci ratio: 1.007833e-01	ci left: 1.182214e-02	ci right 1.308491e-02	k: 1493	n:120000
CENPE   120000 perm   41 sec   (2940 perm/sec)   p_kst 1.244167e-02   p_cons 6.854250e-01   p_joint 2.276667e-02

Joint ci ratio: 7.248880e-02	ci left: 2.120191e-02	ci right 2.280413e-02	k: 2859	n:130000
Cons ci ratio: 7.366976e-03	ci left: 6.827984e-01	ci right 6.878548e-01	k: 89093	n:130000
KS ci ratio: 9.669346e-02	ci left: 1.188057e-02	ci right 1.309517e-02	k: 1622	n:130000
CENPE   130000 perm   45 sec   (2900 perm/sec)   p_kst 1.247692e-02   p_cons 6.853308e-01   p_joint 2.199231e-02

Outputting figure to mutsig2_images.part000000000036/CENPE.12_8302_130000_0.012477_0.68533_0.021992.png
                gene_name: CENPE
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 10 percent done.
CEP152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
Cons ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
KS ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
CEP152   10000 perm   3 sec   (3946 perm/sec)   p_kst 7.419000e-01   p_cons 1.605000e-01   p_joint 3.676000e-01

Outputting figure to mutsig2_images.part000000000036/CEP152.12_5065_10000_0.7419_0.1605_0.3676.png
                gene_name: CEP152
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
CEP164
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
KS ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
CEP164   10000 perm   2 sec   (4284 perm/sec)   p_kst 8.487000e-01   p_cons 7.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP164.10_4507_10000_0.8487_0.7174_1.png
                gene_name: CEP164
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
CEP250
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
CEP250   10000 perm   3 sec   (3662 perm/sec)   p_kst 1.677000e-01   p_cons 5.594000e-01   p_joint 3.066000e-01

Outputting figure to mutsig2_images.part000000000036/CEP250.10_7457_10000_0.1677_0.5594_0.3066.png
                gene_name: CEP250
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 15 percent done.
CEP290
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
CEP290   10000 perm   3 sec   (3713 perm/sec)   p_kst 9.503000e-01   p_cons 5.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP290.10_7652_10000_0.9503_0.5038_1.png
                gene_name: CEP290
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
CEBPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
Cons ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
KS ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
CEBPZ   10000 perm   2 sec   (4497 perm/sec)   p_kst 3.351000e-01   p_cons 8.055000e-01   p_joint 5.791000e-01

Outputting figure to mutsig2_images.part000000000036/CEBPZ.9_3229_10000_0.3351_0.8055_0.5791.png
                gene_name: CEBPZ
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 18 percent done.
CES7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
Cons ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
KS ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
CES7   10000 perm   2 sec   (4776 perm/sec)   p_kst 5.757000e-01   p_cons 6.893000e-01   p_joint 7.466000e-01

Outputting figure to mutsig2_images.part000000000036/CES7.9_1948_10000_0.5757_0.6893_0.7466.png
                gene_name: CES7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 19 percent done.
CFHR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
CFHR5   10000 perm   2 sec   (5605 perm/sec)   p_kst 3.249000e-01   p_cons 5.528000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000036/CFHR5.9_1750_10000_0.3249_0.5528_0.741.png
                gene_name: CFHR5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 21 percent done.
CELSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
Cons ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
KS ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
CELSR1   10000 perm   3 sec   (3223 perm/sec)   p_kst 2.715000e-01   p_cons 4.311000e-01   p_joint 3.898000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR1.8_9185_10000_0.2715_0.4311_0.3898.png
                gene_name: CELSR1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 23 percent done.
CELSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
Cons ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
KS ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
CELSR2   10000 perm   3 sec   (3605 perm/sec)   p_kst 8.948000e-01   p_cons 5.385000e-01   p_joint 9.123000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR2.8_8908_10000_0.8948_0.5385_0.9123.png
                gene_name: CELSR2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 24 percent done.
CEP170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
CEP170   10000 perm   2 sec   (4639 perm/sec)   p_kst 2.162000e-01   p_cons 4.890000e-02   p_joint 8.770000e-02

Joint ci ratio: 9.355220e-02	ci left: 7.691238e-02	ci right 8.451004e-02	k: 1613	n:20000
Cons ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
KS ci ratio: 5.281551e-02	ci left: 2.102144e-01	ci right 2.216683e-01	k: 4318	n:20000
CEP170   20000 perm   5 sec   (4236 perm/sec)   p_kst 2.159000e-01   p_cons 4.420000e-02   p_joint 8.065000e-02

Joint ci ratio: 8.534532e-02	ci left: 6.288924e-02	ci right 6.852856e-02	k: 1970	n:30000
Cons ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
KS ci ratio: 4.290221e-02	ci left: 2.130079e-01	ci right 2.223802e-01	k: 6530	n:30000
CEP170   30000 perm   7 sec   (4052 perm/sec)   p_kst 2.176667e-01   p_cons 4.603333e-02   p_joint 6.566667e-02

Joint ci ratio: 7.044451e-02	ci left: 6.931335e-02	ci right 7.439901e-02	k: 2873	n:40000
Cons ci ratio: 8.961580e-02	ci left: 4.360061e-02	ci right 4.771567e-02	k: 1825	n:40000
KS ci ratio: 3.691883e-02	ci left: 2.157994e-01	ci right 2.239413e-01	k: 8794	n:40000
CEP170   40000 perm   10 sec   (3961 perm/sec)   p_kst 2.198500e-01   p_cons 4.562500e-02   p_joint 7.182500e-02

Outputting figure to mutsig2_images.part000000000036/CEP170.8_4861_40000_0.21985_0.045625_0.071825.png
                gene_name: CEP170
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 26 percent done.
CECR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
CECR2   10000 perm   2 sec   (4822 perm/sec)   p_kst 2.529000e-01   p_cons 2.776000e-01   p_joint 2.414000e-01

Outputting figure to mutsig2_images.part000000000036/CECR2.7_4403_10000_0.2529_0.2776_0.2414.png
                gene_name: CECR2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 27 percent done.
CELF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
KS ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
CELF4   10000 perm   2 sec   (5797 perm/sec)   p_kst 2.157000e-01   p_cons 9.210000e-01   p_joint 3.070000e-01

Outputting figure to mutsig2_images.part000000000036/CELF4.7_1509_10000_0.2157_0.921_0.307.png
                gene_name: CELF4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 29 percent done.
CENPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
Cons ci ratio: 3.344290e-02	ci left: 5.689506e-01	ci right 5.884036e-01	k: 5787	n:10000
KS ci ratio: 4.894348e-02	ci left: 3.811202e-01	ci right 4.003435e-01	k: 3907	n:10000
CENPI   10000 perm   2 sec   (5285 perm/sec)   p_kst 3.907000e-01   p_cons 5.787000e-01   p_joint 6.197000e-01

Outputting figure to mutsig2_images.part000000000036/CENPI.7_2351_10000_0.3907_0.5787_0.6197.png
                gene_name: CENPI
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 31 percent done.
CFI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
Cons ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
KS ci ratio: 3.194990e-02	ci left: 5.911232e-01	ci right 6.104181e-01	k: 6008	n:10000
CFI   10000 perm   2 sec   (5089 perm/sec)   p_kst 6.008000e-01   p_cons 1.576000e-01   p_joint 3.993000e-01

Outputting figure to mutsig2_images.part000000000036/CFI.7_1804_10000_0.6008_0.1576_0.3993.png
                gene_name: CFI
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 32 percent done.
CELF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
Cons ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
KS ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
CELF1   10000 perm   2 sec   (5106 perm/sec)   p_kst 4.365000e-01   p_cons 6.605000e-01   p_joint 5.189000e-01

Outputting figure to mutsig2_images.part000000000036/CELF1.6_1597_10000_0.4365_0.6605_0.5189.png
                gene_name: CELF1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 34 percent done.
CENPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
Cons ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
KS ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
CENPJ   10000 perm   2 sec   (4821 perm/sec)   p_kst 1.024000e-01   p_cons 2.140000e-01   p_joint 1.559000e-01

Joint ci ratio: 6.939191e-02	ci left: 1.328045e-01	ci right 1.424011e-01	k: 2751	n:20000
Cons ci ratio: 5.032577e-02	ci left: 2.268580e-01	ci right 2.386198e-01	k: 4654	n:20000
KS ci ratio: 8.155502e-02	ci left: 9.931124e-02	ci right 1.078044e-01	k: 2070	n:20000
CENPJ   20000 perm   5 sec   (4395 perm/sec)   p_kst 1.035000e-01   p_cons 2.327000e-01   p_joint 1.375500e-01

Outputting figure to mutsig2_images.part000000000036/CENPJ.6_4081_20000_0.1035_0.2327_0.13755.png
                gene_name: CENPJ
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 35 percent done.
CEP135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
CEP135   10000 perm   2 sec   (4941 perm/sec)   p_kst 4.082000e-01   p_cons 1.090000e-01   p_joint 1.741000e-01

Joint ci ratio: 5.318476e-02	ci left: 2.078873e-01	ci right 2.192960e-01	k: 4271	n:20000
Cons ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
KS ci ratio: 3.289996e-02	ci left: 4.082589e-01	ci right 4.219658e-01	k: 8302	n:20000
CEP135   20000 perm   4 sec   (4458 perm/sec)   p_kst 4.151000e-01   p_cons 9.485000e-02   p_joint 2.135500e-01

Outputting figure to mutsig2_images.part000000000036/CEP135.6_3519_20000_0.4151_0.09485_0.21355.png
                gene_name: CEP135
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
CFHR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
CFHR4   10000 perm   2 sec   (5679 perm/sec)   p_kst 2.719000e-01   p_cons 8.370000e-02   p_joint 1.315000e-01

Joint ci ratio: 6.968580e-02	ci left: 1.318193e-01	ci right 1.413866e-01	k: 2731	n:20000
Cons ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
KS ci ratio: 4.550218e-02	ci left: 2.644515e-01	ci right 2.768152e-01	k: 5412	n:20000
CFHR4   20000 perm   4 sec   (5067 perm/sec)   p_kst 2.706000e-01   p_cons 8.400000e-02   p_joint 1.365500e-01

Outputting figure to mutsig2_images.part000000000036/CFHR4.6_1020_20000_0.2706_0.084_0.13655.png
                gene_name: CFHR4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 39 percent done.
CFTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
Cons ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
CFTR   10000 perm   2 sec   (4561 perm/sec)   p_kst 3.550000e-01   p_cons 5.790000e-01   p_joint 5.423000e-01

Outputting figure to mutsig2_images.part000000000036/CFTR.6_4551_10000_0.355_0.579_0.5423.png
                gene_name: CFTR
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 40 percent done.
CFB
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
Cons ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
CFB   10000 perm   2 sec   (5656 perm/sec)   p_kst 2.309000e-01   p_cons 2.372000e-01   p_joint 4.354000e-01

Outputting figure to mutsig2_images.part000000000036/CFB.3_2367_10000_0.2309_0.2372_0.4354.png
                gene_name: CFB
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 42 percent done.
CFHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
Cons ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
KS ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
CFHR1   10000 perm   2 sec   (6000 perm/sec)   p_kst 2.519000e-01   p_cons 7.439000e-01   p_joint 4.913000e-01

Outputting figure to mutsig2_images.part000000000036/CFHR1.5_1017_10000_0.2519_0.7439_0.4913.png
                gene_name: CFHR1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 44 percent done.
CEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
CEL   10000 perm   2 sec   (5439 perm/sec)   p_kst 5.571000e-01   p_cons 5.565000e-01   p_joint 7.152000e-01

Outputting figure to mutsig2_images.part000000000036/CEL.4_2315_10000_0.5571_0.5565_0.7152.png
                gene_name: CEL
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 45 percent done.
CELA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
CELA2A   10000 perm   2 sec   (5969 perm/sec)   p_kst 6.450000e-02   p_cons 7.632000e-01   p_joint 1.923000e-01

Joint ci ratio: 7.425455e-02	ci left: 1.177403e-01	ci right 1.268698e-01	k: 2445	n:20000
Cons ci ratio: 1.569169e-02	ci left: 7.512963e-01	ci right 7.632288e-01	k: 15146	n:20000
KS ci ratio: 1.044404e-01	ci left: 6.235342e-02	ci right 6.927346e-02	k: 1315	n:20000
CELA2A   20000 perm   4 sec   (5342 perm/sec)   p_kst 6.575000e-02   p_cons 7.573000e-01   p_joint 1.222500e-01

Joint ci ratio: 5.515694e-02	ci left: 1.401110e-01	ci right 1.480914e-01	k: 4322	n:30000
Cons ci ratio: 1.275531e-02	ci left: 7.540516e-01	ci right 7.637649e-01	k: 22768	n:30000
KS ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
CELA2A   30000 perm   6 sec   (5093 perm/sec)   p_kst 6.786667e-02   p_cons 7.589333e-01   p_joint 1.440667e-01

Outputting figure to mutsig2_images.part000000000036/CELA2A.4_842_30000_0.067867_0.75893_0.14407.png
                gene_name: CELA2A
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 47 percent done.
CELA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
CELA3A   10000 perm   2 sec   (6505 perm/sec)   p_kst 9.249000e-01   p_cons 1.899000e-01   p_joint 4.474000e-01

Outputting figure to mutsig2_images.part000000000036/CELA3A.4_845_10000_0.9249_0.1899_0.4474.png
                gene_name: CELA3A
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 48 percent done.
CENPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
CENPC1   10000 perm   2 sec   (5340 perm/sec)   p_kst 5.970000e-02   p_cons 9.925000e-01   p_joint 1.839000e-01

Joint ci ratio: 5.898128e-02	ci left: 1.755374e-01	ci right 1.862555e-01	k: 3617	n:20000
Cons ci ratio: 2.409251e-03	ci left: 9.912588e-01	ci right 9.936947e-01	k: 19851	n:20000
KS ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
CENPC1   20000 perm   4 sec   (4790 perm/sec)   p_kst 6.020000e-02   p_cons 9.925500e-01   p_joint 1.808500e-01

Joint ci ratio: 4.818534e-02	ci left: 1.763604e-01	ci right 1.851015e-01	k: 5421	n:30000
Cons ci ratio: 1.867888e-03	ci left: 9.922752e-01	ci right 9.941607e-01	k: 29798	n:30000
KS ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
CENPC1   30000 perm   7 sec   (4581 perm/sec)   p_kst 6.096667e-02   p_cons 9.932667e-01   p_joint 1.807000e-01

Outputting figure to mutsig2_images.part000000000036/CENPC1.4_2908_30000_0.060967_0.99327_0.1807.png
                gene_name: CENPC1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
CEP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
Cons ci ratio: 3.739367e-02	ci left: 5.136554e-01	ci right 5.333309e-01	k: 5235	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
CEP110   10000 perm   2 sec   (4049 perm/sec)   p_kst 3.800000e-03   p_cons 5.235000e-01   p_joint 1.750000e-02

Joint ci ratio: 1.854546e-01	ci left: 1.982091e-02	ci right 2.391974e-02	k: 436	n:20000
Cons ci ratio: 2.639552e-02	ci left: 5.174506e-01	ci right 5.313423e-01	k: 10488	n:20000
KS ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
CEP110   20000 perm   5 sec   (3710 perm/sec)   p_kst 3.450000e-03   p_cons 5.244000e-01   p_joint 2.180000e-02

Joint ci ratio: 1.709067e-01	ci left: 1.575899e-02	ci right 1.873556e-02	k: 516	n:30000
Cons ci ratio: 2.147041e-02	ci left: 5.206309e-01	ci right 5.319640e-01	k: 15789	n:30000
KS ci ratio: 3.782780e-01	ci left: 2.893683e-03	ci right 4.271882e-03	k: 106	n:30000
CEP110   30000 perm   8 sec   (3597 perm/sec)   p_kst 3.533333e-03   p_cons 5.263000e-01   p_joint 1.720000e-02

Joint ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
Cons ci ratio: 1.863613e-02	ci left: 5.202671e-01	ci right 5.300792e-01	k: 21007	n:40000
KS ci ratio: 3.183984e-01	ci left: 3.174780e-03	ci right 4.398997e-03	k: 150	n:40000
CEP110   40000 perm   11 sec   (3515 perm/sec)   p_kst 3.750000e-03   p_cons 5.251750e-01   p_joint 9.100000e-03

Joint ci ratio: 1.488548e-01	ci left: 1.266089e-02	ci right 1.471615e-02	k: 683	n:50000
Cons ci ratio: 1.660988e-02	ci left: 5.225523e-01	ci right 5.313246e-01	k: 26347	n:50000
KS ci ratio: 2.853546e-01	ci left: 3.223947e-03	ci right 4.314914e-03	k: 187	n:50000
CEP110   50000 perm   15 sec   (3442 perm/sec)   p_kst 3.740000e-03   p_cons 5.269400e-01   p_joint 1.366000e-02

Joint ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
Cons ci ratio: 1.518781e-02	ci left: 5.221119e-01	ci right 5.301190e-01	k: 31567	n:60000
KS ci ratio: 2.602608e-01	ci left: 3.276731e-03	ci right 4.272217e-03	k: 225	n:60000
CEP110   60000 perm   18 sec   (3385 perm/sec)   p_kst 3.750000e-03   p_cons 5.261167e-01   p_joint 1.198333e-02

Joint ci ratio: 1.434353e-01	ci left: 9.799438e-03	ci right 1.132726e-02	k: 738	n:70000
Cons ci ratio: 1.404237e-02	ci left: 5.230789e-01	ci right 5.304903e-01	k: 36875	n:70000
KS ci ratio: 2.417231e-01	ci left: 3.290604e-03	ci right 4.208431e-03	k: 261	n:70000
CEP110   70000 perm   21 sec   (3332 perm/sec)   p_kst 3.728571e-03   p_cons 5.267857e-01   p_joint 1.054286e-02

Joint ci ratio: 1.176478e-01	ci left: 1.288164e-02	ci right 1.450391e-02	k: 1094	n:80000
Cons ci ratio: 1.313641e-02	ci left: 5.232830e-01	ci right 5.302150e-01	k: 42140	n:80000
KS ci ratio: 2.229310e-01	ci left: 3.420885e-03	ci right 4.290704e-03	k: 307	n:80000
CEP110   80000 perm   24 sec   (3282 perm/sec)   p_kst 3.837500e-03   p_cons 5.267500e-01   p_joint 1.367500e-02

Joint ci ratio: 7.999275e-02	ci left: 2.494829e-02	ci right 2.703797e-02	k: 2338	n:90000
Cons ci ratio: 1.236763e-02	ci left: 5.241875e-01	ci right 5.307219e-01	k: 47471	n:90000
KS ci ratio: 2.064755e-01	ci left: 3.577052e-03	ci right 4.410974e-03	k: 358	n:90000
CEP110   90000 perm   28 sec   (3236 perm/sec)   p_kst 3.977778e-03   p_cons 5.274556e-01   p_joint 2.597778e-02

Joint ci ratio: 8.443294e-02	ci left: 2.020836e-02	ci right 2.199957e-02	k: 2109	n:100000
Cons ci ratio: 1.171900e-02	ci left: 5.249501e-01	ci right 5.311482e-01	k: 52805	n:100000
KS ci ratio: 1.946320e-01	ci left: 3.646778e-03	ci right 4.442413e-03	k: 403	n:100000
CEP110   100000 perm   31 sec   (3192 perm/sec)   p_kst 4.030000e-03   p_cons 5.280500e-01   p_joint 2.109000e-02

Joint ci ratio: 8.283045e-02	ci left: 1.912736e-02	ci right 2.078900e-02	k: 2194	n:110000
Cons ci ratio: 1.117904e-02	ci left: 5.248537e-01	ci right 5.307631e-01	k: 58059	n:110000
KS ci ratio: 1.846175e-01	ci left: 3.704944e-03	ci right 4.467024e-03	k: 448	n:110000
CEP110   110000 perm   35 sec   (3147 perm/sec)   p_kst 4.072727e-03   p_cons 5.278091e-01   p_joint 1.994545e-02

Joint ci ratio: 9.093305e-02	ci left: 1.455607e-02	ci right 1.595084e-02	k: 1829	n:120000
Cons ci ratio: 1.070154e-02	ci left: 5.250540e-01	ci right 5.307114e-01	k: 63346	n:120000
KS ci ratio: 1.774536e-01	ci left: 3.690560e-03	ci right 4.417063e-03	k: 485	n:120000
CEP110   120000 perm   39 sec   (3107 perm/sec)   p_kst 4.041667e-03   p_cons 5.278833e-01   p_joint 1.524167e-02

Joint ci ratio: 7.897313e-02	ci left: 1.786492e-02	ci right 1.934128e-02	k: 2417	n:130000
Cons ci ratio: 1.031299e-02	ci left: 5.236506e-01	ci right 5.290867e-01	k: 68428	n:130000
KS ci ratio: 1.707364e-01	ci left: 3.693602e-03	ci right 4.390346e-03	k: 524	n:130000
CEP110   130000 perm   42 sec   (3066 perm/sec)   p_kst 4.030769e-03   p_cons 5.263692e-01   p_joint 1.859231e-02

Joint ci ratio: 7.959795e-02	ci left: 1.635030e-02	ci right 1.771266e-02	k: 2383	n:140000
Cons ci ratio: 9.937379e-03	ci left: 5.237733e-01	ci right 5.290113e-01	k: 73695	n:140000
KS ci ratio: 1.640001e-01	ci left: 3.730903e-03	ci right 4.404178e-03	k: 568	n:140000
CEP110   140000 perm   46 sec   (3029 perm/sec)   p_kst 4.057143e-03   p_cons 5.263929e-01   p_joint 1.702143e-02

Joint ci ratio: 7.239130e-02	ci left: 1.847878e-02	ci right 1.987323e-02	k: 2875	n:150000
Cons ci ratio: 9.593616e-03	ci left: 5.242162e-01	ci right 5.292761e-01	k: 79012	n:150000
KS ci ratio: 1.583926e-01	ci left: 3.744488e-03	ci right 4.394912e-03	k: 609	n:150000
CEP110   150000 perm   50 sec   (2993 perm/sec)   p_kst 4.060000e-03   p_cons 5.267467e-01   p_joint 1.916667e-02

Joint ci ratio: 6.502020e-02	ci left: 2.148977e-02	ci right 2.294011e-02	k: 3553	n:160000
Cons ci ratio: 9.281589e-03	ci left: 5.246938e-01	ci right 5.295927e-01	k: 84343	n:160000
KS ci ratio: 1.540379e-01	ci left: 3.720653e-03	ci right 4.347529e-03	k: 644	n:160000
CEP110   160000 perm   54 sec   (2958 perm/sec)   p_kst 4.025000e-03   p_cons 5.271438e-01   p_joint 2.220625e-02

Joint ci ratio: 6.344172e-02	ci left: 2.126741e-02	ci right 2.266661e-02	k: 3733	n:170000
Cons ci ratio: 8.995594e-03	ci left: 5.252587e-01	ci right 5.300109e-01	k: 89698	n:170000
KS ci ratio: 1.506927e-01	ci left: 3.665868e-03	ci right 4.268889e-03	k: 673	n:170000
CEP110   170000 perm   58 sec   (2926 perm/sec)   p_kst 3.958824e-03   p_cons 5.276353e-01   p_joint 2.195882e-02

Joint ci ratio: 6.659930e-02	ci left: 1.825405e-02	ci right 1.951707e-02	k: 3398	n:180000
Cons ci ratio: 8.739165e-03	ci left: 5.254961e-01	ci right 5.301141e-01	k: 95005	n:180000
KS ci ratio: 1.465137e-01	ci left: 3.670820e-03	ci right 4.256445e-03	k: 712	n:180000
CEP110   180000 perm   62 sec   (2896 perm/sec)   p_kst 3.955556e-03   p_cons 5.278056e-01   p_joint 1.887778e-02

Joint ci ratio: 6.533371e-02	ci left: 1.798686e-02	ci right 1.920684e-02	k: 3532	n:190000
Cons ci ratio: 8.503931e-03	ci left: 5.256838e-01	ci right 5.301785e-01	k: 100307	n:190000
KS ci ratio: 1.421903e-01	ci left: 3.700839e-03	ci right 4.272353e-03	k: 756	n:190000
CEP110   190000 perm   66 sec   (2864 perm/sec)   p_kst 3.978947e-03   p_cons 5.279316e-01   p_joint 1.858947e-02

Joint ci ratio: 6.455105e-02	ci left: 1.752023e-02	ci right 1.869379e-02	k: 3620	n:200000
Cons ci ratio: 8.290798e-03	ci left: 5.256092e-01	ci right 5.299900e-01	k: 105560	n:200000
KS ci ratio: 1.382284e-01	ci left: 3.728084e-03	ci right 4.286443e-03	k: 800	n:200000
CEP110   200000 perm   71 sec   (2829 perm/sec)   p_kst 4.000000e-03   p_cons 5.278000e-01   p_joint 1.810000e-02

Joint ci ratio: 6.722555e-02	ci left: 1.539740e-02	ci right 1.647316e-02	k: 3345	n:210000
Cons ci ratio: 8.087361e-03	ci left: 5.258859e-01	ci right 5.301609e-01	k: 110885	n:210000
KS ci ratio: 1.349818e-01	ci left: 3.729924e-03	ci right 4.274384e-03	k: 839	n:210000
CEP110   210000 perm   75 sec   (2794 perm/sec)   p_kst 3.995238e-03   p_cons 5.280238e-01   p_joint 1.592857e-02

Joint ci ratio: 6.808151e-02	ci left: 1.433977e-02	ci right 1.535489e-02	k: 3265	n:220000
Cons ci ratio: 7.901944e-03	ci left: 5.259022e-01	ci right 5.300789e-01	k: 116158	n:220000
KS ci ratio: 1.323320e-01	ci left: 3.709757e-03	ci right 4.239807e-03	k: 873	n:220000
CEP110   220000 perm   80 sec   (2763 perm/sec)   p_kst 3.968182e-03   p_cons 5.279909e-01   p_joint 1.484091e-02

Joint ci ratio: 6.728307e-02	ci left: 1.405390e-02	ci right 1.503665e-02	k: 3344	n:230000
Cons ci ratio: 7.726902e-03	ci left: 5.260356e-01	ci right 5.301202e-01	k: 121458	n:230000
KS ci ratio: 1.286990e-01	ci left: 3.758763e-03	ci right 4.279945e-03	k: 923	n:230000
CEP110   230000 perm   84 sec   (2734 perm/sec)   p_kst 4.013043e-03   p_cons 5.280783e-01   p_joint 1.453913e-02

Joint ci ratio: 7.110822e-02	ci left: 1.205932e-02	ci right 1.295251e-02	k: 3000	n:240000
Cons ci ratio: 7.560470e-03	ci left: 5.263254e-01	ci right 5.303239e-01	k: 126798	n:240000
KS ci ratio: 1.263962e-01	ci left: 3.739292e-03	ci right 4.247802e-03	k: 957	n:240000
CEP110   240000 perm   89 sec   (2706 perm/sec)   p_kst 3.987500e-03   p_cons 5.283250e-01   p_joint 1.250000e-02

Joint ci ratio: 7.010479e-02	ci left: 1.191877e-02	ci right 1.278859e-02	k: 3087	n:250000
Cons ci ratio: 7.410053e-03	ci left: 5.262088e-01	ci right 5.301265e-01	k: 132042	n:250000
KS ci ratio: 1.230964e-01	ci left: 3.791237e-03	ci right 4.292369e-03	k: 1009	n:250000
CEP110   250000 perm   93 sec   (2679 perm/sec)   p_kst 4.036000e-03   p_cons 5.281680e-01   p_joint 1.234800e-02

Joint ci ratio: 6.151753e-02	ci left: 1.490365e-02	ci right 1.585335e-02	k: 3997	n:260000
Cons ci ratio: 7.264737e-03	ci left: 5.263443e-01	ci right 5.301858e-01	k: 137349	n:260000
KS ci ratio: 1.207291e-01	ci left: 3.794575e-03	ci right 4.285813e-03	k: 1049	n:260000
CEP110   260000 perm   98 sec   (2653 perm/sec)   p_kst 4.034615e-03   p_cons 5.282654e-01   p_joint 1.537308e-02

Joint ci ratio: 6.343004e-02	ci left: 1.350551e-02	ci right 1.439385e-02	k: 3765	n:270000
Cons ci ratio: 7.128441e-03	ci left: 5.264149e-01	ci right 5.301845e-01	k: 142641	n:270000
KS ci ratio: 1.182213e-01	ci left: 3.815723e-03	ci right 4.298722e-03	k: 1094	n:270000
CEP110   270000 perm   103 sec   (2627 perm/sec)   p_kst 4.051852e-03   p_cons 5.283000e-01   p_joint 1.394444e-02

Joint ci ratio: 6.145056e-02	ci left: 1.388460e-02	ci right 1.476835e-02	k: 4010	n:280000
Cons ci ratio: 7.004156e-03	ci left: 5.261524e-01	ci right 5.298541e-01	k: 147841	n:280000
KS ci ratio: 1.156093e-01	ci left: 3.852801e-03	ci right 4.328982e-03	k: 1144	n:280000
CEP110   280000 perm   108 sec   (2602 perm/sec)   p_kst 4.085714e-03   p_cons 5.280036e-01   p_joint 1.432143e-02

Joint ci ratio: 6.064334e-02	ci left: 1.377252e-02	ci right 1.463723e-02	k: 4118	n:290000
Cons ci ratio: 6.883624e-03	ci left: 5.260914e-01	ci right 5.297287e-01	k: 153094	n:290000
KS ci ratio: 1.131156e-01	ci left: 3.890782e-03	ci right 4.360593e-03	k: 1195	n:290000
CEP110   290000 perm   113 sec   (2576 perm/sec)   p_kst 4.120690e-03   p_cons 5.279103e-01   p_joint 1.420000e-02

Joint ci ratio: 6.042038e-02	ci left: 1.341842e-02	ci right 1.425768e-02	k: 4150	n:300000
Cons ci ratio: 6.767252e-03	ci left: 5.261717e-01	ci right 5.297478e-01	k: 158388	n:300000
KS ci ratio: 1.112252e-01	ci left: 3.893921e-03	ci right 4.355739e-03	k: 1236	n:300000
CEP110   300000 perm   118 sec   (2550 perm/sec)   p_kst 4.120000e-03   p_cons 5.279600e-01   p_joint 1.383333e-02

Joint ci ratio: 6.006842e-02	ci left: 1.314437e-02	ci right 1.396154e-02	k: 4200	n:310000
Cons ci ratio: 6.658527e-03	ci left: 5.261021e-01	ci right 5.296200e-01	k: 163637	n:310000
KS ci ratio: 1.090843e-01	ci left: 3.922024e-03	ci right 4.377645e-03	k: 1285	n:310000
CEP110   310000 perm   123 sec   (2522 perm/sec)   p_kst 4.145161e-03   p_cons 5.278613e-01   p_joint 1.354839e-02

Joint ci ratio: 5.565609e-02	ci left: 1.484057e-02	ci right 1.569324e-02	k: 4884	n:320000
Cons ci ratio: 6.556236e-03	ci left: 5.259341e-01	ci right 5.293967e-01	k: 168853	n:320000
KS ci ratio: 1.074266e-01	ci left: 3.921076e-03	ci right 4.369227e-03	k: 1325	n:320000
CEP110   320000 perm   128 sec   (2497 perm/sec)   p_kst 4.140625e-03   p_cons 5.276656e-01   p_joint 1.526250e-02

Joint ci ratio: 5.606658e-02	ci left: 1.418754e-02	ci right 1.500890e-02	k: 4816	n:330000
Cons ci ratio: 6.457417e-03	ci left: 5.258616e-01	ci right 5.292713e-01	k: 174097	n:330000
KS ci ratio: 1.058812e-01	ci left: 3.917284e-03	ci right 4.358160e-03	k: 1364	n:330000
CEP110   330000 perm   133 sec   (2474 perm/sec)   p_kst 4.133333e-03   p_cons 5.275667e-01   p_joint 1.459394e-02

Joint ci ratio: 5.534335e-02	ci left: 1.413857e-02	ci right 1.494620e-02	k: 4943	n:340000
Cons ci ratio: 6.361209e-03	ci left: 5.259290e-01	ci right 5.292881e-01	k: 179387	n:340000
KS ci ratio: 1.045503e-01	ci left: 3.902300e-03	ci right 4.335630e-03	k: 1399	n:340000
CEP110   340000 perm   139 sec   (2450 perm/sec)   p_kst 4.114706e-03   p_cons 5.276088e-01   p_joint 1.453824e-02

Joint ci ratio: 5.734036e-02	ci left: 1.279915e-02	ci right 1.355752e-02	k: 4611	n:350000
Cons ci ratio: 6.270938e-03	ci left: 5.258530e-01	ci right 5.291637e-01	k: 184628	n:350000
KS ci ratio: 1.032684e-01	ci left: 3.888206e-03	ci right 4.314355e-03	k: 1434	n:350000
CEP110   350000 perm   144 sec   (2426 perm/sec)   p_kst 4.097143e-03   p_cons 5.275086e-01   p_joint 1.317429e-02

Joint ci ratio: 5.684129e-02	ci left: 1.266812e-02	ci right 1.341197e-02	k: 4693	n:360000
Cons ci ratio: 6.188954e-03	ci left: 5.254147e-01	ci right 5.286793e-01	k: 189737	n:360000
KS ci ratio: 1.015824e-01	ci left: 3.910120e-03	ci right 4.331257e-03	k: 1482	n:360000
CEP110   360000 perm   150 sec   (2403 perm/sec)   p_kst 4.116667e-03   p_cons 5.270472e-01   p_joint 1.303611e-02

Joint ci ratio: 5.707973e-02	ci left: 1.222708e-02	ci right 1.294815e-02	k: 4656	n:370000
Cons ci ratio: 6.107080e-03	ci left: 5.252464e-01	ci right 5.284666e-01	k: 194937	n:370000
KS ci ratio: 1.003059e-01	ci left: 3.904550e-03	ci right 4.319491e-03	k: 1520	n:370000
CEP110   370000 perm   155 sec   (2381 perm/sec)   p_kst 4.108108e-03   p_cons 5.268568e-01   p_joint 1.258378e-02

Joint ci ratio: 5.642451e-02	ci left: 1.218808e-02	ci right 1.289833e-02	k: 4765	n:380000
Cons ci ratio: 6.025475e-03	ci left: 5.253268e-01	ci right 5.285043e-01	k: 200228	n:380000
KS ci ratio: 9.904440e-02	ci left: 3.901872e-03	ci right 4.311010e-03	k: 1559	n:380000
CEP110   380000 perm   161 sec   (2359 perm/sec)   p_kst 4.102632e-03   p_cons 5.269158e-01   p_joint 1.253947e-02

Outputting figure to mutsig2_images.part000000000036/CEP110.4_7146_380000_0.0041026_0.52692_0.012539.png
                gene_name: CEP110
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.0041 
        ci_ks_bounds_left: 0.0039 
       ci_ks_bounds_right: 0.0043 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 52 percent done.
CEP55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
Cons ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
KS ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
CEP55   10000 perm   2 sec   (5755 perm/sec)   p_kst 1.339000e-01   p_cons 4.085000e-01   p_joint 1.920000e-01

Outputting figure to mutsig2_images.part000000000036/CEP55.4_1427_10000_0.1339_0.4085_0.192.png
                gene_name: CEP55
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
CEP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
Cons ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
CEP70   10000 perm   2 sec   (5553 perm/sec)   p_kst 4.553000e-01   p_cons 3.670000e-01   p_joint 6.125000e-01

Outputting figure to mutsig2_images.part000000000036/CEP70.4_1858_10000_0.4553_0.367_0.6125.png
                gene_name: CEP70
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
CEP76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.354076e-03	ci left: 9.415963e-01	ci right 9.505416e-01	k: 9462	n:10000
KS ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
CEP76   10000 perm   2 sec   (5771 perm/sec)   p_kst 8.034000e-01   p_cons 9.462000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP76.4_2028_10000_0.8034_0.9462_1.png
                gene_name: CEP76
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
CEP97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
Cons ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
KS ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
CEP97   10000 perm   2 sec   (5391 perm/sec)   p_kst 8.832000e-01   p_cons 2.508000e-01   p_joint 7.097000e-01

Outputting figure to mutsig2_images.part000000000036/CEP97.4_2642_10000_0.8832_0.2508_0.7097.png
                gene_name: CEP97
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 58 percent done.
CERKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
KS ci ratio: 3.153859e-02	ci left: 5.973472e-01	ci right 6.165905e-01	k: 6070	n:10000
CERKL   10000 perm   2 sec   (6070 perm/sec)   p_kst 6.070000e-01   p_cons 6.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CERKL.4_1733_10000_0.607_0.6993_1.png
                gene_name: CERKL
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CFHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
Cons ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
KS ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
CFHR2   10000 perm   2 sec   (6169 perm/sec)   p_kst 2.200000e-01   p_cons 1.240000e-02   p_joint 3.430000e-02

Joint ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
Cons ci ratio: 2.429408e-01	ci left: 1.128823e-02	ci right 1.445574e-02	k: 256	n:20000
KS ci ratio: 5.250553e-02	ci left: 2.121950e-01	ci right 2.236871e-01	k: 4358	n:20000
CFHR2   20000 perm   4 sec   (5290 perm/sec)   p_kst 2.179000e-01   p_cons 1.280000e-02   p_joint 3.195000e-02

Joint ci ratio: 9.816841e-02	ci left: 4.798397e-02	ci right 5.297021e-02	k: 1513	n:30000
Cons ci ratio: 1.969436e-01	ci left: 1.174887e-02	ci right 1.434670e-02	k: 390	n:30000
KS ci ratio: 4.268922e-02	ci left: 2.146946e-01	ci right 2.240931e-01	k: 6581	n:30000
CFHR2   30000 perm   6 sec   (5042 perm/sec)   p_kst 2.193667e-01   p_cons 1.300000e-02   p_joint 5.043333e-02

Joint ci ratio: 8.992586e-02	ci left: 4.330705e-02	ci right 4.740928e-02	k: 1813	n:40000
Cons ci ratio: 1.673883e-01	ci left: 1.239200e-02	ci right 1.467943e-02	k: 540	n:40000
KS ci ratio: 3.691076e-02	ci left: 2.158739e-01	ci right 2.240168e-01	k: 8797	n:40000
CFHR2   40000 perm   8 sec   (4922 perm/sec)   p_kst 2.199250e-01   p_cons 1.350000e-02   p_joint 4.532500e-02

Joint ci ratio: 8.672112e-02	ci left: 3.755489e-02	ci right 4.097886e-02	k: 1962	n:50000
Cons ci ratio: 1.486346e-01	ci left: 1.269942e-02	ci right 1.475761e-02	k: 685	n:50000
KS ci ratio: 3.291715e-02	ci left: 2.173098e-01	ci right 2.246027e-01	k: 11047	n:50000
CFHR2   50000 perm   10 sec   (4806 perm/sec)   p_kst 2.209400e-01   p_cons 1.370000e-02   p_joint 3.924000e-02

Joint ci ratio: 9.112866e-02	ci left: 2.855169e-02	ci right 3.129403e-02	k: 1794	n:60000
Cons ci ratio: 1.351197e-01	ci left: 1.289789e-02	ci right 1.478290e-02	k: 829	n:60000
KS ci ratio: 3.010978e-02	ci left: 2.169393e-01	ci right 2.235878e-01	k: 13215	n:60000
CFHR2   60000 perm   13 sec   (4714 perm/sec)   p_kst 2.202500e-01   p_cons 1.381667e-02   p_joint 2.990000e-02

Joint ci ratio: 7.802849e-02	ci left: 3.344047e-02	ci right 3.616969e-02	k: 2435	n:70000
Cons ci ratio: 1.249224e-01	ci left: 1.300422e-02	ci right 1.475070e-02	k: 970	n:70000
KS ci ratio: 2.789675e-02	ci left: 2.169358e-01	ci right 2.230874e-01	k: 15400	n:70000
CFHR2   70000 perm   15 sec   (4624 perm/sec)   p_kst 2.200000e-01   p_cons 1.385714e-02   p_joint 3.478571e-02

Joint ci ratio: 7.304341e-02	ci left: 3.347925e-02	ci right 3.602963e-02	k: 2779	n:80000
Cons ci ratio: 1.167857e-01	ci left: 1.307585e-02	ci right 1.470968e-02	k: 1110	n:80000
KS ci ratio: 2.609992e-02	ci left: 2.170712e-01	ci right 2.228241e-01	k: 17595	n:80000
CFHR2   80000 perm   18 sec   (4540 perm/sec)   p_kst 2.199375e-01   p_cons 1.387500e-02   p_joint 3.473750e-02

Joint ci ratio: 7.349000e-02	ci left: 2.951711e-02	ci right 3.177994e-02	k: 2757	n:90000
Cons ci ratio: 1.109137e-01	ci left: 1.292910e-02	ci right 1.445804e-02	k: 1231	n:90000
KS ci ratio: 2.455835e-02	ci left: 2.179166e-01	ci right 2.233459e-01	k: 19856	n:90000
CFHR2   90000 perm   20 sec   (4461 perm/sec)   p_kst 2.206222e-01   p_cons 1.367778e-02   p_joint 3.063333e-02

Joint ci ratio: 6.984165e-02	ci left: 2.947234e-02	ci right 3.161501e-02	k: 3053	n:100000
Cons ci ratio: 1.050622e-01	ci left: 1.300815e-02	ci right 1.446026e-02	k: 1372	n:100000
KS ci ratio: 2.333497e-02	ci left: 2.175153e-01	ci right 2.226609e-01	k: 22008	n:100000
CFHR2   100000 perm   23 sec   (4382 perm/sec)   p_kst 2.200800e-01   p_cons 1.372000e-02   p_joint 3.053000e-02

Joint ci ratio: 7.355066e-02	ci left: 2.424607e-02	ci right 2.610636e-02	k: 2768	n:110000
Cons ci ratio: 9.991502e-02	ci left: 1.311003e-02	ci right 1.449760e-02	k: 1517	n:110000
KS ci ratio: 2.226902e-02	ci left: 2.173285e-01	ci right 2.222317e-01	k: 24175	n:110000
CFHR2   110000 perm   26 sec   (4307 perm/sec)   p_kst 2.197727e-01   p_cons 1.379091e-02   p_joint 2.516364e-02

Outputting figure to mutsig2_images.part000000000036/CFHR2.4_833_110000_0.21977_0.013791_0.025164.png
                gene_name: CFHR2
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 61 percent done.
CFHR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
CFHR3   10000 perm   2 sec   (6416 perm/sec)   p_kst 4.255000e-01   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 3.211980e-02	ci left: 4.199312e-01	ci right 4.336901e-01	k: 8536	n:20000
CFHR3   20000 perm   4 sec   (5700 perm/sec)   p_kst 4.268000e-01   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
KS ci ratio: 2.556903e-02	ci left: 4.336401e-01	ci right 4.449050e-01	k: 13178	n:30000
CFHR3   30000 perm   6 sec   (5410 perm/sec)   p_kst 4.392667e-01   p_cons 6.666667e-05   p_joint 0

Joint ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
Cons ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
KS ci ratio: 2.222221e-02	ci left: 4.326557e-01	ci right 4.424034e-01	k: 17501	n:40000
CFHR3   40000 perm   8 sec   (5219 perm/sec)   p_kst 4.375250e-01   p_cons 7.500000e-05   p_joint 2.575000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
KS ci ratio: 1.997536e-02	ci left: 4.307284e-01	ci right 4.394392e-01	k: 21754	n:50000
CFHR3   50000 perm   10 sec   (5052 perm/sec)   p_kst 4.350800e-01   p_cons 6.000000e-05   p_joint 2.360000e-03

Joint ci ratio: 3.516595e-01	ci left: 1.704031e-03	ci right 2.445456e-03	k: 123	n:60000
Cons ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
KS ci ratio: 1.823615e-02	ci left: 4.310780e-01	ci right 4.390283e-01	k: 26103	n:60000
CFHR3   60000 perm   12 sec   (4929 perm/sec)   p_kst 4.350500e-01   p_cons 5.000000e-05   p_joint 2.050000e-03

Joint ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
Cons ci ratio: 1.753002e+00	ci left: 1.556972e-05	ci right 1.463019e-04	k: 4	n:70000
KS ci ratio: 1.692696e-02	ci left: 4.301100e-01	ci right 4.374669e-01	k: 30365	n:70000
CFHR3   70000 perm   15 sec   (4822 perm/sec)   p_kst 4.337857e-01   p_cons 5.714286e-05   p_joint 1.414286e-03

Joint ci ratio: 3.684998e-01	ci left: 1.152891e-03	ci right 1.684324e-03	k: 112	n:80000
Cons ci ratio: 1.753012e+00	ci left: 1.362348e-05	ci right 1.280149e-04	k: 4	n:80000
KS ci ratio: 1.583814e-02	ci left: 4.302121e-01	ci right 4.370927e-01	k: 34692	n:80000
CFHR3   80000 perm   17 sec   (4721 perm/sec)   p_kst 4.336500e-01   p_cons 5.000000e-05   p_joint 1.400000e-03

Joint ci ratio: 3.561220e-01	ci left: 1.105586e-03	ci right 1.594132e-03	k: 120	n:90000
Cons ci ratio: 1.753019e+00	ci left: 1.210974e-05	ci right 1.137915e-04	k: 4	n:90000
KS ci ratio: 1.493964e-02	ci left: 4.301702e-01	ci right 4.366563e-01	k: 39007	n:90000
CFHR3   90000 perm   19 sec   (4627 perm/sec)   p_kst 4.334111e-01   p_cons 4.444444e-05   p_joint 1.333333e-03

Joint ci ratio: 3.735498e-01	ci left: 8.950862e-04	ci right 1.314717e-03	k: 109	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 1.418893e-02	ci left: 4.297861e-01	ci right 4.359378e-01	k: 43286	n:100000
CFHR3   100000 perm   22 sec   (4534 perm/sec)   p_kst 4.328600e-01   p_cons 1.000000e-05   p_joint 1.090000e-03

Joint ci ratio: 4.275418e-01	ci left: 6.010347e-04	ci right 9.352880e-04	k: 83	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 1.354559e-02	ci left: 4.293152e-01	ci right 4.351793e-01	k: 47547	n:110000
CFHR3   110000 perm   25 sec   (4449 perm/sec)   p_kst 4.322455e-01   p_cons 9.090909e-06   p_joint 7.545455e-04

Joint ci ratio: 4.201140e-01	ci left: 5.732796e-04	ci right 8.850030e-04	k: 86	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 1.298512e-02	ci left: 4.288285e-01	ci right 4.344415e-01	k: 51796	n:120000
CFHR3   120000 perm   27 sec   (4367 perm/sec)   p_kst 4.316333e-01   p_cons 8.333333e-06   p_joint 7.166667e-04

Joint ci ratio: 4.525103e-01	ci left: 4.469942e-04	ci right 7.145652e-04	k: 74	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 1.249477e-02	ci left: 4.281904e-01	ci right 4.335819e-01	k: 56015	n:130000
CFHR3   130000 perm   30 sec   (4292 perm/sec)   p_kst 4.308846e-01   p_cons 7.692308e-06   p_joint 5.692308e-04

Joint ci ratio: 4.861015e-01	ci left: 3.520729e-04	ci right 5.837243e-04	k: 64	n:140000
Cons ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
KS ci ratio: 1.204112e-02	ci left: 4.282539e-01	ci right 4.334489e-01	k: 60319	n:140000
CFHR3   140000 perm   33 sec   (4217 perm/sec)   p_kst 4.308500e-01   p_cons 1.428571e-05   p_joint 4.571429e-04

Joint ci ratio: 5.435101e-01	ci left: 2.531625e-04	ci right 4.470133e-04	k: 51	n:150000
Cons ci ratio: 2.263183e+00	ci left: 1.614733e-06	ci right 4.816375e-05	k: 2	n:150000
KS ci ratio: 1.162817e-02	ci left: 4.285386e-01	ci right 4.335574e-01	k: 64657	n:150000
CFHR3   150000 perm   36 sec   (4144 perm/sec)   p_kst 4.310467e-01   p_cons 1.333333e-05   p_joint 3.400000e-04

Joint ci ratio: 8.001041e-01	ci left: 9.112728e-05	ci right 2.156878e-04	k: 23	n:160000
Cons ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
KS ci ratio: 1.123851e-02	ci left: 4.295085e-01	ci right 4.343690e-01	k: 69110	n:160000
CFHR3   160000 perm   39 sec   (4077 perm/sec)   p_kst 4.319375e-01   p_cons 1.250000e-05   p_joint 1.437500e-04

Joint ci ratio: 7.687142e-01	ci left: 9.517091e-05	ci right 2.170802e-04	k: 25	n:170000
Cons ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
KS ci ratio: 1.089714e-02	ci left: 4.298434e-01	ci right 4.345589e-01	k: 73474	n:170000
CFHR3   170000 perm   42 sec   (4015 perm/sec)   p_kst 4.322000e-01   p_cons 1.176471e-05   p_joint 1.470588e-04

Joint ci ratio: 7.407507e-01	ci left: 9.885320e-05	ci right 2.182347e-04	k: 27	n:180000
Cons ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
KS ci ratio: 1.059731e-02	ci left: 4.295767e-01	ci right 4.341588e-01	k: 77736	n:180000
CFHR3   180000 perm   46 sec   (3955 perm/sec)   p_kst 4.318667e-01   p_cons 1.111111e-05   p_joint 1.500000e-04

Joint ci ratio: 7.156324e-01	ci left: 1.022221e-04	ci right 2.191971e-04	k: 29	n:190000
Cons ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
KS ci ratio: 1.031585e-02	ci left: 4.295817e-01	ci right 4.340414e-01	k: 82044	n:190000
CFHR3   190000 perm   49 sec   (3895 perm/sec)   p_kst 4.318105e-01   p_cons 1.052632e-05   p_joint 1.526316e-04

Joint ci ratio: 6.625413e-01	ci left: 1.177327e-04	ci right 2.375499e-04	k: 34	n:200000
Cons ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
KS ci ratio: 1.004300e-02	ci left: 4.302073e-01	ci right 4.345546e-01	k: 86476	n:200000
CFHR3   200000 perm   52 sec   (3838 perm/sec)   p_kst 4.323800e-01   p_cons 1.000000e-05   p_joint 1.700000e-04

Joint ci ratio: 6.532758e-01	ci left: 1.160921e-04	ci right 2.317854e-04	k: 35	n:210000
Cons ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
KS ci ratio: 9.785178e-03	ci left: 4.310507e-01	ci right 4.352940e-01	k: 90966	n:210000
CFHR3   210000 perm   56 sec   (3783 perm/sec)   p_kst 4.331714e-01   p_cons 9.523810e-06   p_joint 1.666667e-04

Joint ci ratio: 6.443884e-01	ci left: 1.146114e-04	ci right 2.265346e-04	k: 36	n:220000
Cons ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
KS ci ratio: 9.562569e-03	ci left: 4.309781e-01	ci right 4.351237e-01	k: 95271	n:220000
CFHR3   220000 perm   59 sec   (3729 perm/sec)   p_kst 4.330500e-01   p_cons 9.090909e-06   p_joint 1.636364e-04

Joint ci ratio: 6.048126e-01	ci left: 1.279260e-04	ci right 2.418233e-04	k: 41	n:230000
Cons ci ratio: 1.959979e+00	ci left: 2.689887e-06	ci right 3.811810e-05	k: 3	n:230000
KS ci ratio: 9.352422e-03	ci left: 4.310215e-01	ci right 4.350758e-01	k: 99601	n:230000
CFHR3   230000 perm   63 sec   (3675 perm/sec)   p_kst 4.330478e-01   p_cons 1.304348e-05   p_joint 1.782609e-04

Joint ci ratio: 5.018397e-01	ci left: 1.907816e-04	ci right 3.217880e-04	k: 60	n:240000
Cons ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
KS ci ratio: 9.218751e-03	ci left: 4.276891e-01	ci right 4.316542e-01	k: 103121	n:240000
CFHR3   240000 perm   66 sec   (3618 perm/sec)   p_kst 4.296708e-01   p_cons 1.250000e-05   p_joint 2.500000e-04

Joint ci ratio: 5.843053e-01	ci left: 1.278847e-04	ci right 2.362647e-04	k: 44	n:250000
Cons ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
KS ci ratio: 9.033655e-03	ci left: 4.276664e-01	ci right 4.315513e-01	k: 107402	n:250000
CFHR3   250000 perm   70 sec   (3570 perm/sec)   p_kst 4.296080e-01   p_cons 1.200000e-05   p_joint 1.760000e-04

Joint ci ratio: 5.717380e-01	ci left: 1.295327e-04	ci right 2.359836e-04	k: 46	n:260000
Cons ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
KS ci ratio: 8.856011e-03	ci left: 4.278268e-01	ci right 4.316363e-01	k: 111730	n:260000
CFHR3   260000 perm   74 sec   (3522 perm/sec)   p_kst 4.297308e-01   p_cons 1.153846e-05   p_joint 1.769231e-04

Joint ci ratio: 5.779222e-01	ci left: 1.215703e-04	ci right 2.230068e-04	k: 45	n:270000
Cons ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
KS ci ratio: 8.690289e-03	ci left: 4.278724e-01	ci right 4.316106e-01	k: 116030	n:270000
CFHR3   270000 perm   78 sec   (3467 perm/sec)   p_kst 4.297407e-01   p_cons 1.111111e-05   p_joint 1.666667e-04

Joint ci ratio: 5.779240e-01	ci left: 1.172284e-04	ci right 2.150425e-04	k: 45	n:280000
Cons ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
KS ci ratio: 8.537578e-03	ci left: 4.276833e-01	ci right 4.313539e-01	k: 120265	n:280000
CFHR3   280000 perm   82 sec   (3423 perm/sec)   p_kst 4.295179e-01   p_cons 1.071429e-05   p_joint 1.607143e-04

Joint ci ratio: 5.657555e-01	ci left: 1.190845e-04	ci right 2.155116e-04	k: 47	n:290000
Cons ci ratio: 1.600314e+00	ci left: 5.598252e-06	ci right 4.023517e-05	k: 5	n:290000
KS ci ratio: 8.383435e-03	ci left: 4.280455e-01	ci right 4.316525e-01	k: 124656	n:290000
CFHR3   290000 perm   86 sec   (3380 perm/sec)   p_kst 4.298483e-01   p_cons 1.724138e-05   p_joint 1.620690e-04

Joint ci ratio: 5.599533e-01	ci left: 1.179737e-04	ci right 2.121313e-04	k: 48	n:300000
Cons ci ratio: 1.481601e+00	ci left: 7.339682e-06	ci right 4.353107e-05	k: 6	n:300000
KS ci ratio: 8.241043e-03	ci left: 4.281641e-01	ci right 4.317105e-01	k: 128981	n:300000
CFHR3   300000 perm   90 sec   (3337 perm/sec)   p_kst 4.299367e-01   p_cons 2.000000e-05   p_joint 1.600000e-04

Joint ci ratio: 5.599548e-01	ci left: 1.141680e-04	ci right 2.052885e-04	k: 48	n:310000
Cons ci ratio: 1.481602e+00	ci left: 7.102917e-06	ci right 4.212686e-05	k: 6	n:310000
KS ci ratio: 8.107481e-03	ci left: 4.281660e-01	ci right 4.316547e-01	k: 133272	n:310000
CFHR3   310000 perm   94 sec   (3290 perm/sec)   p_kst 4.299097e-01   p_cons 1.935484e-05   p_joint 1.548387e-04

Joint ci ratio: 5.779300e-01	ci left: 1.025746e-04	ci right 1.881628e-04	k: 45	n:320000
Cons ci ratio: 1.481602e+00	ci left: 6.880950e-06	ci right 4.081041e-05	k: 6	n:320000
KS ci ratio: 7.979090e-03	ci left: 4.282369e-01	ci right 4.316706e-01	k: 137585	n:320000
CFHR3   320000 perm   98 sec   (3250 perm/sec)   p_kst 4.299531e-01   p_cons 1.875000e-05   p_joint 1.406250e-04

Joint ci ratio: 5.779313e-01	ci left: 9.946626e-05	ci right 1.824611e-04	k: 45	n:330000
Cons ci ratio: 1.481603e+00	ci left: 6.672435e-06	ci right 3.957374e-05	k: 6	n:330000
KS ci ratio: 7.858361e-03	ci left: 4.281949e-01	ci right 4.315760e-01	k: 141862	n:330000
CFHR3   330000 perm   103 sec   (3211 perm/sec)   p_kst 4.298848e-01   p_cons 1.818182e-05   p_joint 1.363636e-04

Joint ci ratio: 5.843196e-01	ci left: 9.403231e-05	ci right 1.737254e-04	k: 44	n:340000
Cons ci ratio: 1.481603e+00	ci left: 6.476186e-06	ci right 3.840982e-05	k: 6	n:340000
KS ci ratio: 7.742765e-03	ci left: 4.281675e-01	ci right 4.314984e-01	k: 146143	n:340000
CFHR3   340000 perm   107 sec   (3171 perm/sec)   p_kst 4.298324e-01   p_cons 1.764706e-05   p_joint 1.294118e-04

Joint ci ratio: 5.779337e-01	ci left: 9.378238e-05	ci right 1.720349e-04	k: 45	n:350000
Cons ci ratio: 1.481604e+00	ci left: 6.291152e-06	ci right 3.731241e-05	k: 6	n:350000
KS ci ratio: 7.633948e-03	ci left: 4.280249e-01	ci right 4.313077e-01	k: 150383	n:350000
CFHR3   350000 perm   112 sec   (3132 perm/sec)   p_kst 4.296657e-01   p_cons 1.714286e-05   p_joint 1.285714e-04

Joint ci ratio: 5.657648e-01	ci left: 9.592884e-05	ci right 1.736075e-04	k: 47	n:360000
Cons ci ratio: 1.481604e+00	ci left: 6.116397e-06	ci right 3.627596e-05	k: 6	n:360000
KS ci ratio: 7.527673e-03	ci left: 4.280155e-01	ci right 4.312523e-01	k: 154668	n:360000
CFHR3   360000 perm   116 sec   (3096 perm/sec)   p_kst 4.296333e-01   p_cons 1.666667e-05   p_joint 1.305556e-04

Joint ci ratio: 5.488712e-01	ci left: 1.003015e-04	ci right 1.781550e-04	k: 50	n:370000
Cons ci ratio: 1.481605e+00	ci left: 5.951088e-06	ci right 3.529554e-05	k: 6	n:370000
KS ci ratio: 7.422523e-03	ci left: 4.282176e-01	ci right 4.314105e-01	k: 159031	n:370000
CFHR3   370000 perm   121 sec   (3060 perm/sec)   p_kst 4.298135e-01   p_cons 1.621622e-05   p_joint 1.351351e-04

Joint ci ratio: 5.435683e-01	ci left: 9.993013e-05	ci right 1.764583e-04	k: 51	n:380000
Cons ci ratio: 1.481605e+00	ci left: 5.794480e-06	ci right 3.436672e-05	k: 6	n:380000
KS ci ratio: 7.324646e-03	ci left: 4.282094e-01	ci right 4.313600e-01	k: 163318	n:380000
CFHR3   380000 perm   126 sec   (3024 perm/sec)   p_kst 4.297842e-01   p_cons 1.578947e-05   p_joint 1.342105e-04

Joint ci ratio: 5.384161e-01	ci left: 9.958126e-05	ci right 1.748453e-04	k: 52	n:390000
Cons ci ratio: 1.481606e+00	ci left: 5.645903e-06	ci right 3.348553e-05	k: 6	n:390000
KS ci ratio: 7.227516e-03	ci left: 4.284070e-01	ci right 4.315171e-01	k: 167685	n:390000
CFHR3   390000 perm   130 sec   (2990 perm/sec)   p_kst 4.299615e-01   p_cons 1.538462e-05   p_joint 1.333333e-04

Joint ci ratio: 5.334078e-01	ci left: 9.925312e-05	ci right 1.733097e-04	k: 53	n:400000
Cons ci ratio: 1.481606e+00	ci left: 5.504755e-06	ci right 3.264840e-05	k: 6	n:400000
KS ci ratio: 7.137788e-03	ci left: 4.283451e-01	ci right 4.314159e-01	k: 171952	n:400000
CFHR3   400000 perm   135 sec   (2956 perm/sec)   p_kst 4.298800e-01   p_cons 1.500000e-05   p_joint 1.325000e-04

Joint ci ratio: 5.146842e-01	ci left: 1.052974e-04	ci right 1.801185e-04	k: 57	n:410000
Cons ci ratio: 1.481606e+00	ci left: 5.370492e-06	ci right 3.185210e-05	k: 6	n:410000
KS ci ratio: 7.052690e-03	ci left: 4.281913e-01	ci right 4.312243e-01	k: 176180	n:410000
CFHR3   410000 perm   140 sec   (2923 perm/sec)   p_kst 4.297073e-01   p_cons 1.463415e-05   p_joint 1.390244e-04

Joint ci ratio: 5.018675e-01	ci left: 1.090168e-04	ci right 1.838817e-04	k: 60	n:420000
Cons ci ratio: 1.481607e+00	ci left: 5.242623e-06	ci right 3.109372e-05	k: 6	n:420000
KS ci ratio: 6.966060e-03	ci left: 4.283616e-01	ci right 4.313584e-01	k: 180541	n:420000
CFHR3   420000 perm   145 sec   (2890 perm/sec)   p_kst 4.298595e-01   p_cons 1.428571e-05   p_joint 1.428571e-04

Joint ci ratio: 5.191817e-01	ci left: 9.837773e-05	ci right 1.691145e-04	k: 56	n:430000
Cons ci ratio: 1.481607e+00	ci left: 5.120701e-06	ci right 3.037062e-05	k: 6	n:430000
KS ci ratio: 6.887544e-03	ci left: 4.281686e-01	ci right 4.311301e-01	k: 184749	n:430000
CFHR3   430000 perm   150 sec   (2858 perm/sec)   p_kst 4.296488e-01   p_cons 1.395349e-05   p_joint 1.302326e-04

Joint ci ratio: 5.146867e-01	ci left: 9.811789e-05	ci right 1.678379e-04	k: 57	n:440000
Cons ci ratio: 1.385915e+00	ci left: 6.396303e-06	ci right 3.277853e-05	k: 7	n:440000
KS ci ratio: 6.808937e-03	ci left: 4.281776e-01	ci right 4.311052e-01	k: 189042	n:440000
CFHR3   440000 perm   156 sec   (2827 perm/sec)   p_kst 4.296409e-01   p_cons 1.590909e-05   p_joint 1.295455e-04

Joint ci ratio: 5.191832e-01	ci left: 9.400532e-05	ci right 1.615985e-04	k: 56	n:450000
Cons ci ratio: 1.385915e+00	ci left: 6.254162e-06	ci right 3.205013e-05	k: 7	n:450000
KS ci ratio: 6.731527e-03	ci left: 4.282907e-01	ci right 4.311857e-01	k: 193382	n:450000
CFHR3   450000 perm   161 sec   (2797 perm/sec)   p_kst 4.297378e-01   p_cons 1.555556e-05   p_joint 1.244444e-04

Joint ci ratio: 5.285405e-01	ci left: 8.818915e-05	ci right 1.531674e-04	k: 54	n:460000
Cons ci ratio: 1.385916e+00	ci left: 6.118202e-06	ci right 3.135339e-05	k: 7	n:460000
KS ci ratio: 6.658352e-03	ci left: 4.282775e-01	ci right 4.311408e-01	k: 197666	n:460000
CFHR3   460000 perm   166 sec   (2768 perm/sec)   p_kst 4.297087e-01   p_cons 1.521739e-05   p_joint 1.173913e-04

Joint ci ratio: 5.334132e-01	ci left: 8.447055e-05	ci right 1.474981e-04	k: 53	n:470000
Cons ci ratio: 1.306653e+00	ci left: 7.348607e-06	ci right 3.353842e-05	k: 8	n:470000
KS ci ratio: 6.583939e-03	ci left: 4.285308e-01	ci right 4.313637e-01	k: 202075	n:470000
CFHR3   470000 perm   172 sec   (2739 perm/sec)   p_kst 4.299468e-01   p_cons 1.702128e-05   p_joint 1.127660e-04

Joint ci ratio: 5.191853e-01	ci left: 8.812991e-05	ci right 1.514987e-04	k: 56	n:480000
Cons ci ratio: 1.239599e+00	ci left: 8.573729e-06	ci right 3.559304e-05	k: 9	n:480000
KS ci ratio: 6.513320e-03	ci left: 4.286717e-01	ci right 4.314750e-01	k: 206435	n:480000
CFHR3   480000 perm   177 sec   (2710 perm/sec)   p_kst 4.300729e-01   p_cons 1.875000e-05   p_joint 1.166667e-04

Joint ci ratio: 5.103093e-01	ci left: 8.988248e-05	ci right 1.530146e-04	k: 58	n:490000
Cons ci ratio: 1.181910e+00	ci left: 9.786550e-06	ci right 3.753102e-05	k: 10	n:490000
KS ci ratio: 6.445972e-03	ci left: 4.287275e-01	ci right 4.315019e-01	k: 210756	n:490000
CFHR3   490000 perm   183 sec   (2682 perm/sec)   p_kst 4.301143e-01   p_cons 2.040816e-05   p_joint 1.183673e-04

Joint ci ratio: 5.018735e-01	ci left: 9.157385e-05	ci right 1.544611e-04	k: 60	n:500000
Cons ci ratio: 1.181910e+00	ci left: 9.590818e-06	ci right 3.678040e-05	k: 10	n:500000
KS ci ratio: 6.380956e-03	ci left: 4.287591e-01	ci right 4.315057e-01	k: 215066	n:500000
CFHR3   500000 perm   188 sec   (2654 perm/sec)   p_kst 4.301320e-01   p_cons 2.000000e-05   p_joint 1.200000e-04

Joint ci ratio: 4.978097e-01	ci left: 9.149172e-05	ci right 1.536387e-04	k: 61	n:510000
Cons ci ratio: 1.181911e+00	ci left: 9.402762e-06	ci right 3.605923e-05	k: 10	n:510000
KS ci ratio: 6.318627e-03	ci left: 4.287308e-01	ci right 4.314503e-01	k: 219346	n:510000
CFHR3   510000 perm   194 sec   (2627 perm/sec)   p_kst 4.300902e-01   p_cons 1.960784e-05   p_joint 1.196078e-04

Joint ci ratio: 4.938432e-01	ci left: 9.141473e-05	ci right 1.528459e-04	k: 62	n:520000
Cons ci ratio: 1.181911e+00	ci left: 9.221939e-06	ci right 3.536578e-05	k: 10	n:520000
KS ci ratio: 6.256298e-03	ci left: 4.288441e-01	ci right 4.315374e-01	k: 223699	n:520000
CFHR3   520000 perm   200 sec   (2601 perm/sec)   p_kst 4.301904e-01   p_cons 1.923077e-05   p_joint 1.192308e-04

Joint ci ratio: 4.824881e-01	ci left: 9.465336e-05	ci right 1.563140e-04	k: 65	n:530000
Cons ci ratio: 1.181911e+00	ci left: 9.047939e-06	ci right 3.469851e-05	k: 10	n:530000
KS ci ratio: 6.197685e-03	ci left: 4.288024e-01	ci right 4.314701e-01	k: 227972	n:530000
CFHR3   530000 perm   206 sec   (2575 perm/sec)   p_kst 4.301358e-01   p_cons 1.886792e-05   p_joint 1.226415e-04

Joint ci ratio: 4.861864e-01	ci left: 9.127486e-05	ci right 1.513430e-04	k: 64	n:540000
Cons ci ratio: 1.181911e+00	ci left: 8.880384e-06	ci right 3.405595e-05	k: 10	n:540000
KS ci ratio: 6.140411e-03	ci left: 4.287845e-01	ci right 4.314273e-01	k: 232257	n:540000
CFHR3   540000 perm   212 sec   (2550 perm/sec)   p_kst 4.301056e-01   p_cons 1.851852e-05   p_joint 1.185185e-04

Joint ci ratio: 4.788746e-01	ci left: 9.280917e-05	ci right 1.526669e-04	k: 66	n:550000
Cons ci ratio: 1.181912e+00	ci left: 8.718922e-06	ci right 3.343676e-05	k: 10	n:550000
KS ci ratio: 6.083545e-03	ci left: 4.288601e-01	ci right 4.314788e-01	k: 236593	n:550000
CFHR3   550000 perm   218 sec   (2526 perm/sec)   p_kst 4.301691e-01   p_cons 1.818182e-05   p_joint 1.200000e-04

Joint ci ratio: 4.753405e-01	ci left: 9.272274e-05	ci right 1.519397e-04	k: 67	n:560000
Cons ci ratio: 1.181912e+00	ci left: 8.563226e-06	ci right 3.283968e-05	k: 10	n:560000
KS ci ratio: 6.028581e-03	ci left: 4.289045e-01	ci right 4.314998e-01	k: 240913	n:560000
CFHR3   560000 perm   224 sec   (2503 perm/sec)   p_kst 4.302018e-01   p_cons 1.785714e-05   p_joint 1.196429e-04

Joint ci ratio: 4.651890e-01	ci left: 9.573531e-05	ci right 1.551568e-04	k: 70	n:570000
Cons ci ratio: 1.087199e+00	ci left: 1.087825e-05	ci right 3.677442e-05	k: 12	n:570000
KS ci ratio: 5.974995e-03	ci left: 4.289545e-01	ci right 4.315269e-01	k: 245237	n:570000
CFHR3   570000 perm   230 sec   (2478 perm/sec)   p_kst 4.302404e-01   p_cons 2.105263e-05   p_joint 1.228070e-04

Joint ci ratio: 4.651895e-01	ci left: 9.408468e-05	ci right 1.524817e-04	k: 70	n:580000
Cons ci ratio: 1.087199e+00	ci left: 1.069069e-05	ci right 3.614038e-05	k: 12	n:580000
KS ci ratio: 5.922459e-03	ci left: 4.290322e-01	ci right 4.315823e-01	k: 249578	n:580000
CFHR3   580000 perm   236 sec   (2455 perm/sec)   p_kst 4.303069e-01   p_cons 2.068966e-05   p_joint 1.206897e-04

Joint ci ratio: 4.899730e-01	ci left: 8.205337e-05	ci right 1.366155e-04	k: 63	n:590000
Cons ci ratio: 1.087199e+00	ci left: 1.050949e-05	ci right 3.552784e-05	k: 12	n:590000
KS ci ratio: 5.873010e-03	ci left: 4.289633e-01	ci right 4.314917e-01	k: 253834	n:590000
CFHR3   590000 perm   243 sec   (2431 perm/sec)   p_kst 4.302271e-01   p_cons 2.033898e-05   p_joint 1.067797e-04

Joint ci ratio: 4.899735e-01	ci left: 8.068580e-05	ci right 1.343386e-04	k: 63	n:600000
Cons ci ratio: 1.087200e+00	ci left: 1.033433e-05	ci right 3.493571e-05	k: 12	n:600000
KS ci ratio: 5.822780e-03	ci left: 4.290650e-01	ci right 4.315723e-01	k: 258191	n:600000
CFHR3   600000 perm   249 sec   (2409 perm/sec)   p_kst 4.303183e-01   p_cons 2.000000e-05   p_joint 1.050000e-04

Joint ci ratio: 4.861899e-01	ci left: 8.080058e-05	ci right 1.339760e-04	k: 64	n:610000
Cons ci ratio: 1.087200e+00	ci left: 1.016492e-05	ci right 3.436300e-05	k: 12	n:610000
KS ci ratio: 5.773642e-03	ci left: 4.291783e-01	ci right 4.316650e-01	k: 262557	n:610000
CFHR3   610000 perm   256 sec   (2387 perm/sec)   p_kst 4.304213e-01   p_cons 1.967213e-05   p_joint 1.049180e-04

Joint ci ratio: 4.788780e-01	ci left: 8.233060e-05	ci right 1.354306e-04	k: 66	n:620000
Cons ci ratio: 1.087200e+00	ci left: 1.000097e-05	ci right 3.380876e-05	k: 12	n:620000
KS ci ratio: 5.726820e-03	ci left: 4.291945e-01	ci right 4.316610e-01	k: 266865	n:620000
CFHR3   620000 perm   262 sec   (2365 perm/sec)   p_kst 4.304274e-01   p_cons 1.935484e-05   p_joint 1.064516e-04

Joint ci ratio: 4.788784e-01	ci left: 8.102375e-05	ci right 1.332809e-04	k: 66	n:630000
Cons ci ratio: 1.087200e+00	ci left: 9.842220e-06	ci right 3.327212e-05	k: 12	n:630000
KS ci ratio: 5.680292e-03	ci left: 4.292816e-01	ci right 4.317286e-01	k: 271218	n:630000
CFHR3   630000 perm   269 sec   (2344 perm/sec)   p_kst 4.305048e-01   p_cons 1.904762e-05   p_joint 1.047619e-04

Joint ci ratio: 3.563297e-01	ci left: 1.554585e-04	ci right 2.241999e-04	k: 120	n:640000
Cons ci ratio: 1.012127e+00	ci left: 1.195932e-05	ci right 3.670226e-05	k: 14	n:640000
KS ci ratio: 5.636567e-03	ci left: 4.292193e-01	ci right 4.316470e-01	k: 275477	n:640000
CFHR3   640000 perm   275 sec   (2323 perm/sec)   p_kst 4.304328e-01   p_cons 2.187500e-05   p_joint 1.875000e-04

Joint ci ratio: 3.671092e-01	ci left: 1.432759e-04	ci right 2.090073e-04	k: 113	n:650000
Cons ci ratio: 1.012127e+00	ci left: 1.177533e-05	ci right 3.613761e-05	k: 14	n:650000
KS ci ratio: 5.594995e-03	ci left: 4.290574e-01	ci right 4.314663e-01	k: 279670	n:650000
CFHR3   650000 perm   282 sec   (2303 perm/sec)   p_kst 4.302615e-01   p_cons 2.153846e-05   p_joint 1.738462e-04

Joint ci ratio: 3.671097e-01	ci left: 1.411050e-04	ci right 2.058406e-04	k: 113	n:660000
Cons ci ratio: 1.012127e+00	ci left: 1.159691e-05	ci right 3.559008e-05	k: 14	n:660000
KS ci ratio: 5.553745e-03	ci left: 4.289521e-01	ci right 4.313425e-01	k: 283897	n:660000
CFHR3   660000 perm   289 sec   (2283 perm/sec)   p_kst 4.301470e-01   p_cons 2.121212e-05   p_joint 1.712121e-04

Joint ci ratio: 3.639311e-01	ci left: 1.417099e-04	ci right 2.060264e-04	k: 115	n:670000
Cons ci ratio: 1.012128e+00	ci left: 1.142382e-05	ci right 3.505889e-05	k: 14	n:670000
KS ci ratio: 5.512134e-03	ci left: 4.289618e-01	ci right 4.313343e-01	k: 288199	n:670000
CFHR3   670000 perm   296 sec   (2261 perm/sec)   p_kst 4.301478e-01   p_cons 2.089552e-05   p_joint 1.716418e-04

Joint ci ratio: 2.301411e-01	ci left: 3.774170e-04	ci right 4.769197e-04	k: 289	n:680000
Cons ci ratio: 9.799877e-01	ci left: 1.234621e-05	ci right 3.638241e-05	k: 15	n:680000
KS ci ratio: 5.471823e-03	ci left: 4.289375e-01	ci right 4.312925e-01	k: 292478	n:680000
CFHR3   680000 perm   303 sec   (2241 perm/sec)   p_kst 4.301147e-01   p_cons 2.205882e-05   p_joint 4.250000e-04

Joint ci ratio: 2.281823e-01	ci left: 3.787776e-04	ci right 4.776694e-04	k: 294	n:690000
Cons ci ratio: 9.799879e-01	ci left: 1.216728e-05	ci right 3.585514e-05	k: 15	n:690000
KS ci ratio: 5.432271e-03	ci left: 4.289242e-01	ci right 4.312619e-01	k: 296764	n:690000
CFHR3   690000 perm   311 sec   (2222 perm/sec)   p_kst 4.300928e-01   p_cons 2.173913e-05   p_joint 4.260870e-04

Joint ci ratio: 2.270310e-01	ci left: 3.774078e-04	ci right 4.753753e-04	k: 297	n:700000
Cons ci ratio: 9.507274e-01	ci left: 1.306489e-05	ci right 3.711830e-05	k: 16	n:700000
KS ci ratio: 5.392778e-03	ci left: 4.289826e-01	ci right 4.313037e-01	k: 301100	n:700000
CFHR3   700000 perm   318 sec   (2203 perm/sec)   p_kst 4.301429e-01   p_cons 2.285714e-05   p_joint 4.242857e-04

Joint ci ratio: 2.255225e-01	ci left: 3.774067e-04	ci right 4.746324e-04	k: 301	n:710000
Cons ci ratio: 9.507276e-01	ci left: 1.288087e-05	ci right 3.659551e-05	k: 16	n:710000
KS ci ratio: 5.353950e-03	ci left: 4.290564e-01	ci right 4.313611e-01	k: 305448	n:710000
CFHR3   710000 perm   325 sec   (2185 perm/sec)   p_kst 4.302085e-01   p_cons 2.253521e-05   p_joint 4.239437e-04

Joint ci ratio: 2.394074e-01	ci left: 3.276893e-04	ci right 4.180768e-04	k: 267	n:720000
Cons ci ratio: 9.507278e-01	ci left: 1.270197e-05	ci right 3.608725e-05	k: 16	n:720000
KS ci ratio: 5.317139e-03	ci left: 4.290185e-01	ci right 4.313071e-01	k: 309717	n:720000
CFHR3   720000 perm   332 sec   (2166 perm/sec)   p_kst 4.301625e-01   p_cons 2.222222e-05   p_joint 3.708333e-04

Joint ci ratio: 2.394080e-01	ci left: 3.232003e-04	ci right 4.123498e-04	k: 267	n:730000
Cons ci ratio: 9.239408e-01	ci left: 1.356598e-05	ci right 3.728556e-05	k: 17	n:730000
KS ci ratio: 5.280146e-03	ci left: 4.290680e-01	ci right 4.313408e-01	k: 314049	n:730000
CFHR3   730000 perm   340 sec   (2148 perm/sec)   p_kst 4.302041e-01   p_cons 2.328767e-05   p_joint 3.657534e-04

Joint ci ratio: 2.385199e-01	ci left: 3.213736e-04	ci right 4.096418e-04	k: 269	n:740000
Cons ci ratio: 9.239410e-01	ci left: 1.338266e-05	ci right 3.678170e-05	k: 17	n:740000
KS ci ratio: 5.244320e-03	ci left: 4.290783e-01	ci right 4.313358e-01	k: 318353	n:740000
CFHR3   740000 perm   347 sec   (2131 perm/sec)   p_kst 4.302068e-01   p_cons 2.297297e-05   p_joint 3.635135e-04

Joint ci ratio: 2.385205e-01	ci left: 3.170885e-04	ci right 4.041800e-04	k: 269	n:750000
Cons ci ratio: 9.239412e-01	ci left: 1.320422e-05	ci right 3.629128e-05	k: 17	n:750000
KS ci ratio: 5.210234e-03	ci left: 4.289925e-01	ci right 4.312347e-01	k: 322585	n:750000
CFHR3   750000 perm   355 sec   (2113 perm/sec)   p_kst 4.301133e-01   p_cons 2.266667e-05   p_joint 3.586667e-04

Joint ci ratio: 2.367730e-01	ci left: 3.178661e-04	ci right 4.044378e-04	k: 273	n:760000
Cons ci ratio: 9.239413e-01	ci left: 1.303048e-05	ci right 3.581377e-05	k: 17	n:760000
KS ci ratio: 5.175664e-03	ci left: 4.290168e-01	ci right 4.312443e-01	k: 326899	n:760000
CFHR3   760000 perm   363 sec   (2096 perm/sec)   p_kst 4.301303e-01   p_cons 2.236842e-05   p_joint 3.592105e-04

Joint ci ratio: 2.359138e-01	ci left: 3.161815e-04	ci right 4.019364e-04	k: 275	n:770000
Cons ci ratio: 9.239415e-01	ci left: 1.286125e-05	ci right 3.534866e-05	k: 17	n:770000
KS ci ratio: 5.141841e-03	ci left: 4.290340e-01	ci right 4.312470e-01	k: 331208	n:770000
CFHR3   770000 perm   370 sec   (2079 perm/sec)   p_kst 4.301403e-01   p_cons 2.207792e-05   p_joint 3.571429e-04

Joint ci ratio: 2.329774e-01	ci left: 3.205753e-04	ci right 4.062837e-04	k: 282	n:780000
Cons ci ratio: 8.992981e-01	ci left: 1.367690e-05	ci right 3.647124e-05	k: 18	n:780000
KS ci ratio: 5.108472e-03	ci left: 4.290701e-01	ci right 4.312689e-01	k: 335532	n:780000
CFHR3   780000 perm   378 sec   (2063 perm/sec)   p_kst 4.301692e-01   p_cons 2.307692e-05   p_joint 3.615385e-04

Joint ci ratio: 2.313481e-01	ci left: 3.212862e-04	ci right 4.064981e-04	k: 286	n:790000
Cons ci ratio: 8.992983e-01	ci left: 1.350378e-05	ci right 3.600959e-05	k: 18	n:790000
KS ci ratio: 5.077069e-03	ci left: 4.289775e-01	ci right 4.311622e-01	k: 339755	n:790000
CFHR3   790000 perm   386 sec   (2047 perm/sec)   p_kst 4.300696e-01   p_cons 2.278481e-05   p_joint 3.620253e-04

Joint ci ratio: 2.293586e-01	ci left: 3.231595e-04	ci right 4.080269e-04	k: 291	n:800000
Cons ci ratio: 8.992984e-01	ci left: 1.333498e-05	ci right 3.555947e-05	k: 18	n:800000
KS ci ratio: 5.045144e-03	ci left: 4.289935e-01	ci right 4.311645e-01	k: 344063	n:800000
CFHR3   800000 perm   394 sec   (2031 perm/sec)   p_kst 4.300788e-01   p_cons 2.250000e-05   p_joint 3.637500e-04

Joint ci ratio: 2.278036e-01	ci left: 3.238254e-04	ci right 4.082101e-04	k: 295	n:810000
Cons ci ratio: 8.765273e-01	ci left: 1.412258e-05	ci right 3.663044e-05	k: 19	n:810000
KS ci ratio: 5.014331e-03	ci left: 4.289585e-01	ci right 4.311161e-01	k: 348330	n:810000
CFHR3   810000 perm   402 sec   (2016 perm/sec)   p_kst 4.300370e-01   p_cons 2.345679e-05   p_joint 3.641975e-04

Joint ci ratio: 2.270381e-01	ci left: 3.221764e-04	ci right 4.058097e-04	k: 297	n:820000
Cons ci ratio: 8.765274e-01	ci left: 1.395035e-05	ci right 3.618373e-05	k: 19	n:820000
KS ci ratio: 4.983741e-03	ci left: 4.289573e-01	ci right 4.311017e-01	k: 352624	n:820000
CFHR3   820000 perm   410 sec   (2000 perm/sec)   p_kst 4.300293e-01   p_cons 2.317073e-05   p_joint 3.621951e-04

Joint ci ratio: 2.259039e-01	ci left: 3.217041e-04	ci right 4.047396e-04	k: 300	n:830000
Cons ci ratio: 8.765276e-01	ci left: 1.378227e-05	ci right 3.574779e-05	k: 19	n:830000
KS ci ratio: 4.953485e-03	ci left: 4.289779e-01	ci right 4.311093e-01	k: 356936	n:830000
CFHR3   830000 perm   418 sec   (1985 perm/sec)   p_kst 4.300434e-01   p_cons 2.289157e-05   p_joint 3.614458e-04

Joint ci ratio: 2.236852e-01	ci left: 3.246150e-04	ci right 4.074656e-04	k: 306	n:840000
Cons ci ratio: 8.765277e-01	ci left: 1.361820e-05	ci right 3.532222e-05	k: 19	n:840000
KS ci ratio: 4.923092e-03	ci left: 4.290659e-01	ci right 4.311846e-01	k: 361305	n:840000
CFHR3   840000 perm   427 sec   (1969 perm/sec)   p_kst 4.301250e-01   p_cons 2.261905e-05   p_joint 3.642857e-04

Joint ci ratio: 2.222420e-01	ci left: 3.252391e-04	ci right 4.076401e-04	k: 310	n:850000
Cons ci ratio: 8.765278e-01	ci left: 1.345798e-05	ci right 3.490667e-05	k: 19	n:850000
KS ci ratio: 4.894320e-03	ci left: 4.290448e-01	ci right 4.311510e-01	k: 365583	n:850000
CFHR3   850000 perm   435 sec   (1953 perm/sec)   p_kst 4.300976e-01   p_cons 2.235294e-05   p_joint 3.647059e-04

Joint ci ratio: 2.208264e-01	ci left: 3.258504e-04	ci right 4.078089e-04	k: 314	n:860000
Cons ci ratio: 8.765279e-01	ci left: 1.330149e-05	ci right 3.450078e-05	k: 19	n:860000
KS ci ratio: 4.865228e-03	ci left: 4.291068e-01	ci right 4.312007e-01	k: 369932	n:860000
CFHR3   860000 perm   444 sec   (1939 perm/sec)   p_kst 4.301535e-01   p_cons 2.209302e-05   p_joint 3.651163e-04

Joint ci ratio: 2.190942e-01	ci left: 3.275355e-04	ci right 4.091847e-04	k: 319	n:870000
Cons ci ratio: 8.765281e-01	ci left: 1.314860e-05	ci right 3.410422e-05	k: 19	n:870000
KS ci ratio: 4.836455e-03	ci left: 4.291869e-01	ci right 4.312688e-01	k: 374298	n:870000
CFHR3   870000 perm   452 sec   (1924 perm/sec)   p_kst 4.302276e-01   p_cons 2.183908e-05   p_joint 3.666667e-04

Joint ci ratio: 2.180745e-01	ci left: 3.270360e-04	ci right 4.081303e-04	k: 322	n:880000
Cons ci ratio: 8.765282e-01	ci left: 1.299919e-05	ci right 3.371667e-05	k: 19	n:880000
KS ci ratio: 4.809457e-03	ci left: 4.291357e-01	ci right 4.312057e-01	k: 378550	n:880000
CFHR3   880000 perm   461 sec   (1909 perm/sec)   p_kst 4.301705e-01   p_cons 2.159091e-05   p_joint 3.659091e-04

Joint ci ratio: 2.174026e-01	ci left: 3.254860e-04	ci right 4.059142e-04	k: 324	n:890000
Cons ci ratio: 8.765283e-01	ci left: 1.285313e-05	ci right 3.333784e-05	k: 19	n:890000
KS ci ratio: 4.781536e-03	ci left: 4.292261e-01	ci right 4.312845e-01	k: 382927	n:890000
CFHR3   890000 perm   470 sec   (1895 perm/sec)   p_kst 4.302551e-01   p_cons 2.134831e-05   p_joint 3.640449e-04

Joint ci ratio: 2.160770e-01	ci left: 3.260727e-04	ci right 4.060893e-04	k: 328	n:900000
Cons ci ratio: 8.765284e-01	ci left: 1.271031e-05	ci right 3.296742e-05	k: 19	n:900000
KS ci ratio: 4.755410e-03	ci left: 4.291790e-01	ci right 4.312259e-01	k: 387182	n:900000
CFHR3   900000 perm   479 sec   (1880 perm/sec)   p_kst 4.302022e-01   p_cons 2.111111e-05   p_joint 3.644444e-04

Joint ci ratio: 2.160774e-01	ci left: 3.224894e-04	ci right 4.016269e-04	k: 328	n:910000
Cons ci ratio: 8.765285e-01	ci left: 1.257064e-05	ci right 3.260514e-05	k: 19	n:910000
KS ci ratio: 4.729125e-03	ci left: 4.291934e-01	ci right 4.312290e-01	k: 391492	n:910000
CFHR3   910000 perm   488 sec   (1866 perm/sec)   p_kst 4.302110e-01   p_cons 2.087912e-05   p_joint 3.604396e-04

Joint ci ratio: 2.578845e-01	ci left: 2.187358e-04	ci right 2.844782e-04	k: 230	n:920000
Cons ci ratio: 8.765286e-01	ci left: 1.243400e-05	ci right 3.225074e-05	k: 19	n:920000
KS ci ratio: 4.702875e-03	ci left: 4.292488e-01	ci right 4.312733e-01	k: 395840	n:920000
CFHR3   920000 perm   497 sec   (1853 perm/sec)   p_kst 4.302609e-01   p_cons 2.065217e-05   p_joint 2.500000e-04

Joint ci ratio: 2.556802e-01	ci left: 2.204081e-04	ci right 2.859965e-04	k: 234	n:930000
Cons ci ratio: 8.554040e-01	ci left: 1.313609e-05	ci right 3.321312e-05	k: 20	n:930000
KS ci ratio: 4.676698e-03	ci left: 4.293407e-01	ci right 4.313544e-01	k: 400223	n:930000
CFHR3   930000 perm   506 sec   (1839 perm/sec)   p_kst 4.303473e-01   p_cons 2.150538e-05   p_joint 2.516129e-04

Joint ci ratio: 2.545991e-01	ci left: 2.200549e-04	ci right 2.852174e-04	k: 236	n:940000
Cons ci ratio: 8.554041e-01	ci left: 1.299634e-05	ci right 3.285979e-05	k: 20	n:940000
KS ci ratio: 4.653113e-03	ci left: 4.292031e-01	ci right 4.312059e-01	k: 404392	n:940000
CFHR3   940000 perm   515 sec   (1825 perm/sec)   p_kst 4.302043e-01   p_cons 2.127660e-05   p_joint 2.510638e-04

Joint ci ratio: 2.530028e-01	ci left: 2.206956e-04	ci right 2.855735e-04	k: 239	n:950000
Cons ci ratio: 8.357367e-01	ci left: 1.368356e-05	ci right 3.379005e-05	k: 21	n:950000
KS ci ratio: 4.628797e-03	ci left: 4.291830e-01	ci right 4.311753e-01	k: 408670	n:950000
CFHR3   950000 perm   524 sec   (1812 perm/sec)   p_kst 4.301789e-01   p_cons 2.210526e-05   p_joint 2.515789e-04

Joint ci ratio: 2.530031e-01	ci left: 2.183966e-04	ci right 2.825988e-04	k: 239	n:960000
Cons ci ratio: 8.357368e-01	ci left: 1.354102e-05	ci right 3.343807e-05	k: 21	n:960000
KS ci ratio: 4.604535e-03	ci left: 4.291978e-01	ci right 4.311797e-01	k: 412981	n:960000
CFHR3   960000 perm   534 sec   (1799 perm/sec)   p_kst 4.301885e-01   p_cons 2.187500e-05   p_joint 2.489583e-04

Joint ci ratio: 2.519556e-01	ci left: 2.180765e-04	ci right 2.818775e-04	k: 241	n:970000
Cons ci ratio: 8.357369e-01	ci left: 1.340142e-05	ci right 3.309335e-05	k: 21	n:970000
KS ci ratio: 4.579698e-03	ci left: 4.293144e-01	ci right 4.312860e-01	k: 417391	n:970000
CFHR3   970000 perm   543 sec   (1787 perm/sec)   p_kst 4.303000e-01   p_cons 2.164948e-05   p_joint 2.484536e-04

Joint ci ratio: 2.504082e-01	ci left: 2.187198e-04	ci right 2.822547e-04	k: 244	n:980000
Cons ci ratio: 8.357370e-01	ci left: 1.326467e-05	ci right 3.275566e-05	k: 21	n:980000
KS ci ratio: 4.556121e-03	ci left: 4.293358e-01	ci right 4.312973e-01	k: 421710	n:980000
CFHR3   980000 perm   553 sec   (1774 perm/sec)   p_kst 4.303163e-01   p_cons 2.142857e-05   p_joint 2.489796e-04

Joint ci ratio: 2.509212e-01	ci left: 2.155638e-04	ci right 2.783303e-04	k: 243	n:990000
Cons ci ratio: 8.173666e-01	ci left: 1.392660e-05	ci right 3.364452e-05	k: 22	n:990000
KS ci ratio: 4.532960e-03	ci left: 4.293507e-01	ci right 4.313023e-01	k: 426023	n:990000
CFHR3   990000 perm   562 sec   (1761 perm/sec)   p_kst 4.303263e-01   p_cons 2.222222e-05   p_joint 2.454545e-04

Joint ci ratio: 2.509215e-01	ci left: 2.134081e-04	ci right 2.755470e-04	k: 243	n:1000000
Cons ci ratio: 8.173667e-01	ci left: 1.378733e-05	ci right 3.330808e-05	k: 22	n:1000000
KS ci ratio: 4.510342e-03	ci left: 4.293443e-01	ci right 4.312861e-01	k: 430315	n:1000000
CFHR3   1000000 perm   572 sec   (1749 perm/sec)   p_kst 4.303150e-01   p_cons 2.200000e-05   p_joint 2.430000e-04

Joint ci ratio: 2.595789e-01	ci left: 1.964665e-04	ci right 2.559666e-04	k: 227	n:1010000
Cons ci ratio: 8.173668e-01	ci left: 1.365082e-05	ci right 3.297829e-05	k: 22	n:1010000
KS ci ratio: 4.487959e-03	ci left: 4.293490e-01	ci right 4.312811e-01	k: 434618	n:1010000
CFHR3   1010000 perm   582 sec   (1736 perm/sec)   p_kst 4.303149e-01   p_cons 2.178218e-05   p_joint 2.247525e-04

Joint ci ratio: 2.624738e-01	ci left: 1.899590e-04	ci right 2.482353e-04	k: 222	n:1020000
Cons ci ratio: 8.173669e-01	ci left: 1.351699e-05	ci right 3.265498e-05	k: 22	n:1020000
KS ci ratio: 4.465692e-03	ci left: 4.293771e-01	ci right 4.312998e-01	k: 438945	n:1020000
CFHR3   1020000 perm   591 sec   (1725 perm/sec)   p_kst 4.303382e-01   p_cons 2.156863e-05   p_joint 2.176471e-04

Joint ci ratio: 2.613047e-01	ci left: 1.899290e-04	ci right 2.478941e-04	k: 224	n:1030000
Cons ci ratio: 8.173670e-01	ci left: 1.338576e-05	ci right 3.233794e-05	k: 22	n:1030000
KS ci ratio: 4.443868e-03	ci left: 4.293921e-01	ci right 4.313054e-01	k: 443259	n:1030000
CFHR3   1030000 perm   601 sec   (1714 perm/sec)   p_kst 4.303485e-01   p_cons 2.135922e-05   p_joint 2.174757e-04

Joint ci ratio: 2.590122e-01	ci left: 1.916981e-04	ci right 2.496069e-04	k: 228	n:1040000
Cons ci ratio: 8.173671e-01	ci left: 1.325705e-05	ci right 3.202700e-05	k: 22	n:1040000
KS ci ratio: 4.422976e-03	ci left: 4.293385e-01	ci right 4.312426e-01	k: 447502	n:1040000
CFHR3   1040000 perm   611 sec   (1702 perm/sec)   p_kst 4.302904e-01   p_cons 2.115385e-05   p_joint 2.192308e-04

Joint ci ratio: 2.673143e-01	ci left: 1.774182e-04	ci right 2.330193e-04	k: 214	n:1050000
Cons ci ratio: 8.173672e-01	ci left: 1.313079e-05	ci right 3.172199e-05	k: 22	n:1050000
KS ci ratio: 4.402137e-03	ci left: 4.293127e-01	ci right 4.312077e-01	k: 451773	n:1050000
CFHR3   1050000 perm   621 sec   (1691 perm/sec)   p_kst 4.302600e-01   p_cons 2.095238e-05   p_joint 2.038095e-04

Joint ci ratio: 2.666949e-01	ci left: 1.766247e-04	ci right 2.318274e-04	k: 215	n:1060000
Cons ci ratio: 8.173672e-01	ci left: 1.300691e-05	ci right 3.142272e-05	k: 22	n:1060000
KS ci ratio: 4.381084e-03	ci left: 4.293440e-01	ci right 4.312300e-01	k: 456104	n:1060000
CFHR3   1060000 perm   631 sec   (1680 perm/sec)   p_kst 4.302868e-01   p_cons 2.075472e-05   p_joint 2.028302e-04

Joint ci ratio: 2.660798e-01	ci left: 1.758462e-04	ci right 2.306577e-04	k: 216	n:1070000
Cons ci ratio: 8.173673e-01	ci left: 1.288535e-05	ci right 3.112905e-05	k: 22	n:1070000
KS ci ratio: 4.361202e-03	ci left: 4.292766e-01	ci right 4.311537e-01	k: 460330	n:1070000
CFHR3   1070000 perm   641 sec   (1670 perm/sec)   p_kst 4.302150e-01   p_cons 2.056075e-05   p_joint 2.018692e-04

Joint ci ratio: 2.654690e-01	ci left: 1.750822e-04	ci right 2.295094e-04	k: 217	n:1080000
Cons ci ratio: 8.001574e-01	ci left: 1.350007e-05	ci right 3.195473e-05	k: 23	n:1080000
KS ci ratio: 4.340835e-03	ci left: 4.292956e-01	ci right 4.311640e-01	k: 464648	n:1080000
CFHR3   1080000 perm   651 sec   (1659 perm/sec)   p_kst 4.302296e-01   p_cons 2.129630e-05   p_joint 2.009259e-04

Joint ci ratio: 2.654692e-01	ci left: 1.734759e-04	ci right 2.274039e-04	k: 217	n:1090000
Cons ci ratio: 8.001575e-01	ci left: 1.337622e-05	ci right 3.166157e-05	k: 23	n:1090000
KS ci ratio: 4.321114e-03	ci left: 4.292730e-01	ci right 4.311329e-01	k: 468921	n:1090000
CFHR3   1090000 perm   661 sec   (1648 perm/sec)   p_kst 4.302028e-01   p_cons 2.110092e-05   p_joint 1.990826e-04

Joint ci ratio: 2.648626e-01	ci left: 1.727475e-04	ci right 2.263060e-04	k: 218	n:1100000
Cons ci ratio: 7.839907e-01	ci left: 1.397937e-05	ci right 3.246355e-05	k: 24	n:1100000
KS ci ratio: 4.301787e-03	ci left: 4.292363e-01	ci right 4.310877e-01	k: 473178	n:1100000
CFHR3   1100000 perm   672 sec   (1638 perm/sec)   p_kst 4.301618e-01   p_cons 2.181818e-05   p_joint 1.981818e-04

Joint ci ratio: 1.896655e-01	ci left: 3.482061e-04	ci right 4.220093e-04	k: 426	n:1110000
Cons ci ratio: 7.543948e-01	ci left: 1.530101e-05	ci right 3.432056e-05	k: 26	n:1110000
KS ci ratio: 4.283275e-03	ci left: 4.291364e-01	ci right 4.309793e-01	k: 477364	n:1110000
CFHR3   1110000 perm   682 sec   (1628 perm/sec)   p_kst 4.300577e-01   p_cons 2.342342e-05   p_joint 3.837838e-04

Joint ci ratio: 1.885646e-01	ci left: 3.493501e-04	ci right 4.229168e-04	k: 431	n:1120000
Cons ci ratio: 7.543949e-01	ci left: 1.516440e-05	ci right 3.401412e-05	k: 26	n:1120000
KS ci ratio: 4.263595e-03	ci left: 4.291998e-01	ci right 4.310345e-01	k: 481731	n:1120000
CFHR3   1120000 perm   692 sec   (1618 perm/sec)   p_kst 4.301170e-01   p_cons 2.321429e-05   p_joint 3.848214e-04

Joint ci ratio: 1.876976e-01	ci left: 3.496316e-04	ci right 4.228805e-04	k: 435	n:1130000
Cons ci ratio: 7.543950e-01	ci left: 1.503020e-05	ci right 3.371312e-05	k: 26	n:1130000
KS ci ratio: 4.244980e-03	ci left: 4.291701e-01	ci right 4.309966e-01	k: 485994	n:1130000
CFHR3   1130000 perm   703 sec   (1608 perm/sec)   p_kst 4.300832e-01   p_cons 2.300885e-05   p_joint 3.849558e-04

Joint ci ratio: 1.864192e-01	ci left: 3.515814e-04	ci right 4.246803e-04	k: 441	n:1140000
Cons ci ratio: 7.543951e-01	ci left: 1.489835e-05	ci right 3.341739e-05	k: 26	n:1140000
KS ci ratio: 4.226373e-03	ci left: 4.291681e-01	ci right 4.309866e-01	k: 490288	n:1140000
CFHR3   1140000 perm   714 sec   (1598 perm/sec)   p_kst 4.300772e-01   p_cons 2.280702e-05   p_joint 3.868421e-04

Joint ci ratio: 1.870556e-01	ci left: 3.460374e-04	ci right 4.182570e-04	k: 438	n:1150000
Cons ci ratio: 7.543952e-01	ci left: 1.476880e-05	ci right 3.312680e-05	k: 26	n:1150000
KS ci ratio: 4.208082e-03	ci left: 4.291575e-01	ci right 4.309681e-01	k: 494572	n:1150000
CFHR3   1150000 perm   724 sec   (1587 perm/sec)   p_kst 4.300626e-01   p_cons 2.260870e-05   p_joint 3.808696e-04

Joint ci ratio: 1.859993e-01	ci left: 3.471634e-04	ci right 4.191627e-04	k: 443	n:1160000
Cons ci ratio: 7.279163e-01	ci left: 1.603954e-05	ci right 3.488584e-05	k: 28	n:1160000
KS ci ratio: 4.189806e-03	ci left: 4.291729e-01	ci right 4.309757e-01	k: 498886	n:1160000
CFHR3   1160000 perm   735 sec   (1578 perm/sec)   p_kst 4.300741e-01   p_cons 2.413793e-05   p_joint 3.818966e-04

Joint ci ratio: 1.857904e-01	ci left: 3.450111e-04	ci right 4.164746e-04	k: 444	n:1170000
Cons ci ratio: 7.279164e-01	ci left: 1.590245e-05	ci right 3.458768e-05	k: 28	n:1170000
KS ci ratio: 4.172355e-03	ci left: 4.291189e-01	ci right 4.309139e-01	k: 503119	n:1170000
CFHR3   1170000 perm   746 sec   (1568 perm/sec)   p_kst 4.300162e-01   p_cons 2.393162e-05   p_joint 3.794872e-04

Joint ci ratio: 1.851674e-01	ci left: 3.445116e-04	ci right 4.156055e-04	k: 447	n:1180000
Cons ci ratio: 7.279165e-01	ci left: 1.576768e-05	ci right 3.429456e-05	k: 28	n:1180000
KS ci ratio: 4.153878e-03	ci left: 4.292124e-01	ci right 4.309998e-01	k: 507525	n:1180000
CFHR3   1180000 perm   757 sec   (1558 perm/sec)   p_kst 4.301059e-01   p_cons 2.372881e-05   p_joint 3.788136e-04

Joint ci ratio: 1.843462e-01	ci left: 3.448224e-04	ci right 4.156296e-04	k: 451	n:1190000
Cons ci ratio: 7.279166e-01	ci left: 1.563518e-05	ci right 3.400637e-05	k: 28	n:1190000
KS ci ratio: 4.136545e-03	ci left: 4.291976e-01	ci right 4.309775e-01	k: 511804	n:1190000
CFHR3   1190000 perm   768 sec   (1549 perm/sec)   p_kst 4.300874e-01   p_cons 2.352941e-05   p_joint 3.789916e-04

Joint ci ratio: 2.018585e-01	ci left: 2.824632e-04	ci right 3.466557e-04	k: 376	n:1200000
Cons ci ratio: 3.843708e-01	ci left: 7.006047e-05	ci right 1.040969e-04	k: 103	n:1200000
KS ci ratio: 4.119650e-03	ci left: 4.291565e-01	ci right 4.309289e-01	k: 516051	n:1200000
CFHR3   1200000 perm   779 sec   (1540 perm/sec)   p_kst 4.300425e-01   p_cons 8.583333e-05   p_joint 3.133333e-04

Joint ci ratio: 2.005329e-01	ci left: 2.840529e-04	ci right 3.481308e-04	k: 381	n:1210000
Cons ci ratio: 3.825361e-01	ci left: 7.022824e-05	ci right 1.041424e-04	k: 104	n:1210000
KS ci ratio: 4.102816e-03	ci left: 4.291333e-01	ci right 4.308984e-01	k: 520319	n:1210000
CFHR3   1210000 perm   791 sec   (1531 perm/sec)   p_kst 4.300157e-01   p_cons 8.595041e-05   p_joint 3.148760e-04

Joint ci ratio: 2.002711e-01	ci left: 2.825031e-04	ci right 3.461381e-04	k: 382	n:1220000
Cons ci ratio: 3.825362e-01	ci left: 6.965259e-05	ci right 1.032887e-04	k: 104	n:1220000
KS ci ratio: 4.086227e-03	ci left: 4.291057e-01	ci right 4.308635e-01	k: 524581	n:1220000
CFHR3   1220000 perm   802 sec   (1522 perm/sec)   p_kst 4.299844e-01   p_cons 8.524590e-05   p_joint 3.131148e-04

Joint ci ratio: 1.992334e-01	ci left: 2.832957e-04	ci right 3.467384e-04	k: 386	n:1230000
Cons ci ratio: 3.825363e-01	ci left: 6.908631e-05	ci right 1.024490e-04	k: 104	n:1230000
KS ci ratio: 4.069818e-03	ci left: 4.290810e-01	ci right 4.308316e-01	k: 528846	n:1230000
CFHR3   1230000 perm   813 sec   (1513 perm/sec)   p_kst 4.299561e-01   p_cons 8.455285e-05   p_joint 3.138211e-04

Joint ci ratio: 2.013260e-01	ci left: 2.748828e-04	ci right 3.371676e-04	k: 378	n:1240000
Cons ci ratio: 3.807276e-01	ci left: 6.925825e-05	ci right 1.025063e-04	k: 105	n:1240000
KS ci ratio: 4.053691e-03	ci left: 4.290461e-01	ci right 4.307897e-01	k: 533098	n:1240000
CFHR3   1240000 perm   824 sec   (1504 perm/sec)   p_kst 4.299177e-01   p_cons 8.467742e-05   p_joint 3.048387e-04

Joint ci ratio: 1.997509e-01	ci left: 2.772428e-04	ci right 3.395109e-04	k: 384	n:1250000
Cons ci ratio: 3.789443e-01	ci left: 6.942780e-05	ci right 1.025622e-04	k: 106	n:1250000
KS ci ratio: 4.037939e-03	ci left: 4.289895e-01	ci right 4.307260e-01	k: 537322	n:1250000
CFHR3   1250000 perm   836 sec   (1495 perm/sec)   p_kst 4.298576e-01   p_cons 8.480000e-05   p_joint 3.072000e-04

Joint ci ratio: 1.992341e-01	ci left: 2.765505e-04	ci right 3.384829e-04	k: 386	n:1260000
Cons ci ratio: 3.771859e-01	ci left: 6.959502e-05	ci right 1.026170e-04	k: 107	n:1260000
KS ci ratio: 4.021569e-03	ci left: 4.290314e-01	ci right 4.307610e-01	k: 541669	n:1260000
CFHR3   1260000 perm   847 sec   (1487 perm/sec)   p_kst 4.298960e-01   p_cons 8.492063e-05   p_joint 3.063492e-04

Joint ci ratio: 1.984664e-01	ci left: 2.766175e-04	ci right 3.382973e-04	k: 389	n:1270000
Cons ci ratio: 3.771860e-01	ci left: 6.904702e-05	ci right 1.018090e-04	k: 107	n:1270000
KS ci ratio: 4.005852e-03	ci left: 4.290167e-01	ci right 4.307395e-01	k: 545945	n:1270000
CFHR3   1270000 perm   859 sec   (1479 perm/sec)   p_kst 4.298780e-01   p_cons 8.425197e-05   p_joint 3.062992e-04

Joint ci ratio: 2.211912e-01	ci left: 2.181913e-04	ci right 2.731741e-04	k: 313	n:1280000
Cons ci ratio: 3.737411e-01	ci left: 6.992265e-05	ci right 1.027229e-04	k: 109	n:1280000
KS ci ratio: 3.989683e-03	ci left: 4.290804e-01	ci right 4.307965e-01	k: 550321	n:1280000
CFHR3   1280000 perm   871 sec   (1470 perm/sec)   p_kst 4.299383e-01   p_cons 8.515625e-05   p_joint 2.445313e-04

Joint ci ratio: 2.215445e-01	ci left: 2.157677e-04	ci right 2.702384e-04	k: 312	n:1290000
Cons ci ratio: 3.737413e-01	ci left: 6.938061e-05	ci right 1.019266e-04	k: 109	n:1290000
KS ci ratio: 3.974059e-03	ci left: 4.290997e-01	ci right 4.308091e-01	k: 554641	n:1290000
CFHR3   1290000 perm   882 sec   (1462 perm/sec)   p_kst 4.299543e-01   p_cons 8.449612e-05   p_joint 2.418605e-04

Joint ci ratio: 2.201422e-01	ci left: 2.170147e-04	ci right 2.714065e-04	k: 316	n:1300000
Cons ci ratio: 3.737414e-01	ci left: 6.884691e-05	ci right 1.011425e-04	k: 109	n:1300000
KS ci ratio: 3.959090e-03	ci left: 4.290603e-01	ci right 4.307631e-01	k: 558885	n:1300000
CFHR3   1300000 perm   894 sec   (1454 perm/sec)   p_kst 4.299115e-01   p_cons 8.384615e-05   p_joint 2.430769e-04

Joint ci ratio: 2.194511e-01	ci left: 2.168008e-04	ci right 2.709453e-04	k: 318	n:1310000
Cons ci ratio: 3.720540e-01	ci left: 6.901318e-05	ci right 1.012050e-04	k: 110	n:1310000
KS ci ratio: 3.944190e-03	ci left: 4.290337e-01	ci right 4.307300e-01	k: 563145	n:1310000
CFHR3   1310000 perm   906 sec   (1446 perm/sec)   p_kst 4.298817e-01   p_cons 8.396947e-05   p_joint 2.427481e-04

Joint ci ratio: 1.593341e-01	ci left: 4.218143e-04	ci right 4.955579e-04	k: 604	n:1320000
Cons ci ratio: 3.687467e-01	ci left: 6.986448e-05	ci right 1.020939e-04	k: 112	n:1320000
KS ci ratio: 3.929093e-03	ci left: 4.290530e-01	ci right 4.307428e-01	k: 567465	n:1320000
CFHR3   1320000 perm   918 sec   (1438 perm/sec)   p_kst 4.298977e-01   p_cons 8.484848e-05   p_joint 4.575758e-04

Joint ci ratio: 1.584201e-01	ci left: 4.236967e-04	ci right 4.973040e-04	k: 611	n:1330000
Cons ci ratio: 3.655259e-01	ci left: 7.070422e-05	ci right 1.029682e-04	k: 114	n:1330000
KS ci ratio: 3.914306e-03	ci left: 4.290547e-01	ci right 4.307381e-01	k: 571762	n:1330000
CFHR3   1330000 perm   930 sec   (1430 perm/sec)   p_kst 4.298962e-01   p_cons 8.571429e-05   p_joint 4.593985e-04

Joint ci ratio: 1.581620e-01	ci left: 4.219682e-04	ci right 4.951445e-04	k: 613	n:1340000
Cons ci ratio: 3.655261e-01	ci left: 7.017657e-05	ci right 1.021997e-04	k: 114	n:1340000
KS ci ratio: 3.899127e-03	ci left: 4.291265e-01	ci right 4.308037e-01	k: 576153	n:1340000
CFHR3   1340000 perm   943 sec   (1422 perm/sec)   p_kst 4.299649e-01   p_cons 8.507463e-05   p_joint 4.574627e-04

Joint ci ratio: 1.572679e-01	ci left: 4.238231e-04	ci right 4.968664e-04	k: 620	n:1350000
Cons ci ratio: 3.639471e-01	ci left: 7.032960e-05	ci right 1.022510e-04	k: 115	n:1350000
KS ci ratio: 3.884745e-03	ci left: 4.291187e-01	ci right 4.307897e-01	k: 580438	n:1350000
CFHR3   1350000 perm   955 sec   (1414 perm/sec)   p_kst 4.299541e-01   p_cons 8.518519e-05   p_joint 4.592593e-04

Joint ci ratio: 1.566386e-01	ci left: 4.242388e-04	ci right 4.970337e-04	k: 625	n:1360000
Cons ci ratio: 3.623884e-01	ci left: 7.048068e-05	ci right 1.023013e-04	k: 116	n:1360000
KS ci ratio: 3.870399e-03	ci left: 4.291266e-01	ci right 4.307914e-01	k: 584744	n:1360000
CFHR3   1360000 perm   967 sec   (1406 perm/sec)   p_kst 4.299588e-01   p_cons 8.529412e-05   p_joint 4.595588e-04

Joint ci ratio: 1.565138e-01	ci left: 4.218435e-04	ci right 4.941642e-04	k: 626	n:1370000
Cons ci ratio: 3.623885e-01	ci left: 6.996621e-05	ci right 1.015546e-04	k: 116	n:1370000
KS ci ratio: 3.856383e-03	ci left: 4.291124e-01	ci right 4.307711e-01	k: 589020	n:1370000
CFHR3   1370000 perm   980 sec   (1398 perm/sec)   p_kst 4.299416e-01   p_cons 8.467153e-05   p_joint 4.569343e-04

Joint ci ratio: 1.625947e-01	ci left: 3.867831e-04	ci right 4.559214e-04	k: 580	n:1380000
Cons ci ratio: 3.623886e-01	ci left: 6.945921e-05	ci right 1.008187e-04	k: 116	n:1380000
KS ci ratio: 3.842126e-03	ci left: 4.291484e-01	ci right 4.308011e-01	k: 593365	n:1380000
CFHR3   1380000 perm   992 sec   (1390 perm/sec)   p_kst 4.299746e-01   p_cons 8.405797e-05   p_joint 4.202899e-04

Joint ci ratio: 1.620379e-01	ci left: 3.867613e-04	ci right 4.556359e-04	k: 584	n:1390000
Cons ci ratio: 3.593303e-01	ci left: 7.026791e-05	ci right 1.016621e-04	k: 118	n:1390000
KS ci ratio: 3.828026e-03	ci left: 4.291840e-01	ci right 4.308307e-01	k: 597710	n:1390000
CFHR3   1390000 perm   1005 sec   (1383 perm/sec)   p_kst 4.300072e-01   p_cons 8.489209e-05   p_joint 4.201439e-04

Joint ci ratio: 1.625952e-01	ci left: 3.812576e-04	ci right 4.494084e-04	k: 580	n:1400000
Cons ci ratio: 3.593304e-01	ci left: 6.976600e-05	ci right 1.009360e-04	k: 118	n:1400000
KS ci ratio: 3.814509e-03	ci left: 4.291640e-01	ci right 4.308049e-01	k: 601978	n:1400000
CFHR3   1400000 perm   1018 sec   (1375 perm/sec)   p_kst 4.299843e-01   p_cons 8.428571e-05   p_joint 4.142857e-04

Joint ci ratio: 1.620384e-01	ci left: 3.812753e-04	ci right 4.491731e-04	k: 584	n:1410000
Cons ci ratio: 3.593305e-01	ci left: 6.927120e-05	ci right 1.002201e-04	k: 118	n:1410000
KS ci ratio: 3.800759e-03	ci left: 4.291926e-01	ci right 4.308276e-01	k: 606314	n:1410000
CFHR3   1410000 perm   1031 sec   (1368 perm/sec)   p_kst 4.300099e-01   p_cons 8.368794e-05   p_joint 4.141844e-04

Joint ci ratio: 1.613503e-01	ci left: 3.819689e-04	ci right 4.496734e-04	k: 589	n:1420000
Cons ci ratio: 3.593306e-01	ci left: 6.878337e-05	ci right 9.951434e-05	k: 118	n:1420000
KS ci ratio: 3.787620e-03	ci left: 4.291609e-01	ci right 4.307901e-01	k: 610565	n:1420000
CFHR3   1420000 perm   1043 sec   (1361 perm/sec)   p_kst 4.299754e-01   p_cons 8.309859e-05   p_joint 4.147887e-04

Joint ci ratio: 1.609417e-01	ci left: 3.813111e-04	ci right 4.487112e-04	k: 592	n:1430000
Cons ci ratio: 3.593307e-01	ci left: 6.830236e-05	ci right 9.881844e-05	k: 118	n:1430000
KS ci ratio: 3.774137e-03	ci left: 4.291919e-01	ci right 4.308154e-01	k: 614905	n:1430000
CFHR3   1430000 perm   1056 sec   (1354 perm/sec)   p_kst 4.300035e-01   p_cons 8.251748e-05   p_joint 4.139860e-04

Joint ci ratio: 1.606711e-01	ci left: 3.799961e-04	ci right 4.470400e-04	k: 594	n:1440000
Cons ci ratio: 3.593308e-01	ci left: 6.782804e-05	ci right 9.813221e-05	k: 118	n:1440000
KS ci ratio: 3.761137e-03	ci left: 4.291780e-01	ci right 4.307959e-01	k: 619181	n:1440000
CFHR3   1440000 perm   1069 sec   (1347 perm/sec)   p_kst 4.299868e-01   p_cons 8.194444e-05   p_joint 4.125000e-04

Joint ci ratio: 1.600002e-01	ci left: 3.806853e-04	ci right 4.475434e-04	k: 599	n:1450000
Cons ci ratio: 3.578305e-01	ci left: 6.798779e-05	ci right 9.820696e-05	k: 119	n:1450000
KS ci ratio: 3.748187e-03	ci left: 4.291754e-01	ci right 4.307877e-01	k: 623473	n:1450000
CFHR3   1450000 perm   1082 sec   (1340 perm/sec)   p_kst 4.299814e-01   p_cons 8.206897e-05   p_joint 4.131034e-04

Joint ci ratio: 1.596017e-01	ci left: 3.800505e-04	ci right 4.466150e-04	k: 602	n:1460000
Cons ci ratio: 3.548852e-01	ci left: 6.876936e-05	ci right 9.902630e-05	k: 121	n:1460000
KS ci ratio: 3.735333e-03	ci left: 4.291776e-01	ci right 4.307843e-01	k: 627772	n:1460000
CFHR3   1460000 perm   1095 sec   (1333 perm/sec)   p_kst 4.299808e-01   p_cons 8.287671e-05   p_joint 4.123288e-04

Joint ci ratio: 1.592062e-01	ci left: 3.794245e-04	ci right 4.456989e-04	k: 605	n:1470000
Cons ci ratio: 3.548853e-01	ci left: 6.830154e-05	ci right 9.835265e-05	k: 121	n:1470000
KS ci ratio: 3.722595e-03	ci left: 4.291818e-01	ci right 4.307831e-01	k: 632074	n:1470000
CFHR3   1470000 perm   1108 sec   (1326 perm/sec)   p_kst 4.299823e-01   p_cons 8.231293e-05   p_joint 4.115646e-04

Joint ci ratio: 1.590752e-01	ci left: 3.775096e-04	ci right 4.433901e-04	k: 606	n:1480000
Cons ci ratio: 3.548854e-01	ci left: 6.784004e-05	ci right 9.768811e-05	k: 121	n:1480000
KS ci ratio: 3.710037e-03	ci left: 4.291792e-01	ci right 4.307751e-01	k: 636366	n:1480000
CFHR3   1480000 perm   1122 sec   (1319 perm/sec)   p_kst 4.299770e-01   p_cons 8.175676e-05   p_joint 4.094595e-04

Joint ci ratio: 1.588139e-01	ci left: 3.762648e-04	ci right 4.418099e-04	k: 608	n:1490000
Cons ci ratio: 3.548855e-01	ci left: 6.738473e-05	ci right 9.703249e-05	k: 121	n:1490000
KS ci ratio: 3.697560e-03	ci left: 4.291827e-01	ci right 4.307732e-01	k: 640667	n:1490000
CFHR3   1490000 perm   1135 sec   (1313 perm/sec)   p_kst 4.299779e-01   p_cons 8.120805e-05   p_joint 4.080537e-04

Joint ci ratio: 1.580372e-01	ci left: 3.775979e-04	ci right 4.430230e-04	k: 614	n:1500000
Cons ci ratio: 3.548856e-01	ci left: 6.693550e-05	ci right 9.638562e-05	k: 121	n:1500000
KS ci ratio: 3.685043e-03	ci left: 4.292082e-01	ci right 4.307934e-01	k: 645001	n:1500000
CFHR3   1500000 perm   1149 sec   (1306 perm/sec)   p_kst 4.300007e-01   p_cons 8.066667e-05   p_joint 4.093333e-04

Joint ci ratio: 1.582951e-01	ci left: 3.738251e-04	ci right 4.387122e-04	k: 612	n:1510000
Cons ci ratio: 3.534400e-01	ci left: 6.709555e-05	ci right 9.646823e-05	k: 122	n:1510000
KS ci ratio: 3.672781e-03	ci left: 4.292161e-01	ci right 4.307961e-01	k: 649309	n:1510000
CFHR3   1510000 perm   1162 sec   (1300 perm/sec)   p_kst 4.300060e-01   p_cons 8.079470e-05   p_joint 4.052980e-04

Joint ci ratio: 1.572720e-01	ci left: 3.764211e-04	ci right 4.412967e-04	k: 620	n:1520000
Cons ci ratio: 3.520119e-01	ci left: 6.725374e-05	ci right 9.654952e-05	k: 123	n:1520000
KS ci ratio: 3.660915e-03	ci left: 4.291871e-01	ci right 4.307618e-01	k: 653561	n:1520000
CFHR3   1520000 perm   1176 sec   (1293 perm/sec)   p_kst 4.299743e-01   p_cons 8.092105e-05   p_joint 4.078947e-04

Joint ci ratio: 1.565176e-01	ci left: 3.777284e-04	ci right 4.424878e-04	k: 626	n:1530000
Cons ci ratio: 3.506010e-01	ci left: 6.741010e-05	ci right 9.662952e-05	k: 124	n:1530000
KS ci ratio: 3.649320e-03	ci left: 4.291376e-01	ci right 4.307071e-01	k: 657781	n:1530000
CFHR3   1530000 perm   1189 sec   (1286 perm/sec)   p_kst 4.299222e-01   p_cons 8.104575e-05   p_joint 4.091503e-04

Joint ci ratio: 1.561445e-01	ci left: 3.771475e-04	ci right 4.416387e-04	k: 629	n:1540000
Cons ci ratio: 3.506011e-01	ci left: 6.697237e-05	ci right 9.600206e-05	k: 124	n:1540000
KS ci ratio: 3.637444e-03	ci left: 4.291413e-01	ci right 4.307057e-01	k: 662082	n:1540000
CFHR3   1540000 perm   1203 sec   (1280 perm/sec)   p_kst 4.299234e-01   p_cons 8.051948e-05   p_joint 4.084416e-04

Joint ci ratio: 1.557741e-01	ci left: 3.765742e-04	ci right 4.408004e-04	k: 632	n:1550000
Cons ci ratio: 3.506012e-01	ci left: 6.654029e-05	ci right 9.538269e-05	k: 124	n:1550000
KS ci ratio: 3.626069e-03	ci left: 4.290927e-01	ci right 4.306521e-01	k: 666302	n:1550000
CFHR3   1550000 perm   1217 sec   (1273 perm/sec)   p_kst 4.298723e-01   p_cons 8.000000e-05   p_joint 4.077419e-04

Joint ci ratio: 1.556514e-01	ci left: 3.747763e-04	ci right 4.386408e-04	k: 633	n:1560000
Cons ci ratio: 3.492071e-01	ci left: 6.669844e-05	ci right 9.546841e-05	k: 125	n:1560000
KS ci ratio: 3.614612e-03	ci left: 4.290704e-01	ci right 4.306247e-01	k: 670562	n:1560000
CFHR3   1560000 perm   1231 sec   (1267 perm/sec)   p_kst 4.298474e-01   p_cons 8.012821e-05   p_joint 4.057692e-04

Joint ci ratio: 1.550412e-01	ci left: 3.754501e-04	ci right 4.391553e-04	k: 638	n:1570000
Cons ci ratio: 3.464681e-01	ci left: 6.743621e-05	ci right 9.624506e-05	k: 127	n:1570000
KS ci ratio: 3.603402e-03	ci left: 4.290293e-01	ci right 4.305786e-01	k: 674792	n:1570000
CFHR3   1570000 perm   1245 sec   (1261 perm/sec)   p_kst 4.298038e-01   p_cons 8.089172e-05   p_joint 4.063694e-04

Joint ci ratio: 1.545582e-01	ci left: 3.755075e-04	ci right 4.390054e-04	k: 642	n:1580000
Cons ci ratio: 3.464682e-01	ci left: 6.700940e-05	ci right 9.563592e-05	k: 127	n:1580000
KS ci ratio: 3.592241e-03	ci left: 4.289963e-01	ci right 4.305407e-01	k: 679034	n:1580000
CFHR3   1580000 perm   1259 sec   (1255 perm/sec)   p_kst 4.297684e-01   p_cons 8.037975e-05   p_joint 4.063291e-04

Joint ci ratio: 1.540797e-01	ci left: 3.755643e-04	ci right 4.388572e-04	k: 646	n:1590000
Cons ci ratio: 3.451226e-01	ci left: 6.716227e-05	ci right 9.571777e-05	k: 128	n:1590000
KS ci ratio: 3.581027e-03	ci left: 4.289851e-01	ci right 4.305246e-01	k: 683310	n:1590000
CFHR3   1590000 perm   1273 sec   (1249 perm/sec)   p_kst 4.297547e-01   p_cons 8.050314e-05   p_joint 4.062893e-04

Joint ci ratio: 1.572736e-01	ci left: 3.575998e-04	ci right 4.192322e-04	k: 620	n:1600000
Cons ci ratio: 3.411780e-01	ci left: 6.845595e-05	ci right 9.715548e-05	k: 131	n:1600000
KS ci ratio: 3.570130e-03	ci left: 4.289446e-01	ci right 4.304794e-01	k: 687539	n:1600000
CFHR3   1600000 perm   1287 sec   (1243 perm/sec)   p_kst 4.297119e-01   p_cons 8.187500e-05   p_joint 3.875000e-04

Joint ci ratio: 1.560221e-01	ci left: 3.613464e-04	ci right 4.230827e-04	k: 630	n:1610000
Cons ci ratio: 3.386222e-01	ci left: 6.916698e-05	ci right 9.789989e-05	k: 133	n:1610000
KS ci ratio: 3.559144e-03	ci left: 4.289308e-01	ci right 4.304607e-01	k: 691810	n:1610000
CFHR3   1610000 perm   1302 sec   (1237 perm/sec)   p_kst 4.296957e-01   p_cons 8.260870e-05   p_joint 3.913043e-04

Joint ci ratio: 1.554075e-01	ci left: 3.620820e-04	ci right 4.236776e-04	k: 635	n:1620000
Cons ci ratio: 3.386223e-01	ci left: 6.874002e-05	ci right 9.729558e-05	k: 133	n:1620000
KS ci ratio: 3.548182e-03	ci left: 4.289276e-01	ci right 4.304529e-01	k: 696098	n:1620000
CFHR3   1620000 perm   1316 sec   (1231 perm/sec)   p_kst 4.296901e-01   p_cons 8.209877e-05   p_joint 3.919753e-04

Joint ci ratio: 1.549211e-01	ci left: 3.622194e-04	ci right 4.236276e-04	k: 639	n:1630000
Cons ci ratio: 3.361231e-01	ci left: 6.944136e-05	ci right 9.802922e-05	k: 135	n:1630000
KS ci ratio: 3.537475e-03	ci left: 4.289031e-01	ci right 4.304236e-01	k: 700351	n:1630000
CFHR3   1630000 perm   1331 sec   (1225 perm/sec)   p_kst 4.296632e-01   p_cons 8.282209e-05   p_joint 3.920245e-04

Joint ci ratio: 1.590784e-01	ci left: 3.406789e-04	ci right 4.001332e-04	k: 606	n:1640000
Cons ci ratio: 3.336784e-01	ci left: 7.013492e-05	ci right 9.875315e-05	k: 137	n:1640000
KS ci ratio: 3.526738e-03	ci left: 4.288965e-01	ci right 4.304123e-01	k: 704633	n:1640000
CFHR3   1640000 perm   1345 sec   (1219 perm/sec)   p_kst 4.296543e-01   p_cons 8.353659e-05   p_joint 3.695122e-04

Joint ci ratio: 1.589477e-01	ci left: 3.391961e-04	ci right 3.983383e-04	k: 607	n:1650000
Cons ci ratio: 3.324760e-01	ci left: 7.026524e-05	ci right 9.881121e-05	k: 138	n:1650000
KS ci ratio: 3.515924e-03	ci left: 4.289142e-01	ci right 4.304255e-01	k: 708955	n:1650000
CFHR3   1650000 perm   1360 sec   (1213 perm/sec)   p_kst 4.296697e-01   p_cons 8.363636e-05   p_joint 3.678788e-04

Joint ci ratio: 1.601379e-01	ci left: 3.319474e-04	ci right 3.903008e-04	k: 598	n:1660000
Cons ci ratio: 3.301094e-01	ci left: 7.094658e-05	ci right 9.952062e-05	k: 140	n:1660000
KS ci ratio: 3.505472e-03	ci left: 4.288950e-01	ci right 4.304017e-01	k: 713216	n:1660000
CFHR3   1660000 perm   1374 sec   (1208 perm/sec)   p_kst 4.296482e-01   p_cons 8.433735e-05   p_joint 3.602410e-04

Joint ci ratio: 1.597384e-01	ci left: 3.316842e-04	ci right 3.898319e-04	k: 601	n:1670000
Cons ci ratio: 3.289450e-01	ci left: 7.107102e-05	ci right 9.957286e-05	k: 141	n:1670000
KS ci ratio: 3.494941e-03	ci left: 4.288999e-01	ci right 4.304021e-01	k: 717517	n:1670000
CFHR3   1670000 perm   1389 sec   (1202 perm/sec)   p_kst 4.296509e-01   p_cons 8.443114e-05   p_joint 3.598802e-04

Joint ci ratio: 1.590791e-01	ci left: 3.325674e-04	ci right 3.906063e-04	k: 606	n:1680000
Cons ci ratio: 3.277928e-01	ci left: 7.119415e-05	ci right 9.962429e-05	k: 142	n:1680000
KS ci ratio: 3.484611e-03	ci left: 4.288900e-01	ci right 4.303877e-01	k: 721793	n:1680000
CFHR3   1680000 perm   1403 sec   (1197 perm/sec)   p_kst 4.296387e-01   p_cons 8.452381e-05   p_joint 3.607143e-04

Joint ci ratio: 1.589483e-01	ci left: 3.311677e-04	ci right 3.889103e-04	k: 607	n:1690000
Cons ci ratio: 3.266527e-01	ci left: 7.131600e-05	ci right 9.967495e-05	k: 143	n:1690000
KS ci ratio: 3.474401e-03	ci left: 4.288760e-01	ci right 4.303692e-01	k: 726062	n:1690000
CFHR3   1690000 perm   1418 sec   (1192 perm/sec)   p_kst 4.296225e-01   p_cons 8.461538e-05   p_joint 3.591716e-04

Joint ci ratio: 1.602725e-01	ci left: 3.235721e-04	ci right 3.805056e-04	k: 597	n:1700000
Cons ci ratio: 3.255243e-01	ci left: 7.143658e-05	ci right 9.972485e-05	k: 144	n:1700000
KS ci ratio: 3.464305e-03	ci left: 4.288586e-01	ci right 4.303475e-01	k: 730325	n:1700000
CFHR3   1700000 perm   1432 sec   (1187 perm/sec)   p_kst 4.296029e-01   p_cons 8.470588e-05   p_joint 3.511765e-04

Joint ci ratio: 1.596065e-01	ci left: 3.244868e-04	ci right 3.813213e-04	k: 602	n:1710000
Cons ci ratio: 3.255244e-01	ci left: 7.101882e-05	ci right 9.914167e-05	k: 144	n:1710000
KS ci ratio: 3.454417e-03	ci left: 4.288246e-01	ci right 4.303090e-01	k: 734559	n:1710000
CFHR3   1710000 perm   1447 sec   (1181 perm/sec)   p_kst 4.295667e-01   p_cons 8.421053e-05   p_joint 3.520468e-04

Joint ci ratio: 1.592110e-01	ci left: 3.242749e-04	ci right 3.809181e-04	k: 605	n:1720000
Cons ci ratio: 3.255245e-01	ci left: 7.060592e-05	ci right 9.856526e-05	k: 144	n:1720000
KS ci ratio: 3.444277e-03	ci left: 4.288385e-01	ci right 4.303187e-01	k: 738875	n:1720000
CFHR3   1720000 perm   1463 sec   (1176 perm/sec)   p_kst 4.295785e-01   p_cons 8.372093e-05   p_joint 3.517442e-04

Joint ci ratio: 1.651814e-01	ci left: 2.985532e-04	ci right 3.528535e-04	k: 562	n:1730000
Cons ci ratio: 3.233023e-01	ci left: 7.125973e-05	ci right 9.924540e-05	k: 146	n:1730000
KS ci ratio: 3.434660e-03	ci left: 4.287905e-01	ci right 4.302664e-01	k: 743084	n:1730000
CFHR3   1730000 perm   1478 sec   (1170 perm/sec)   p_kst 4.295283e-01   p_cons 8.439306e-05   p_joint 3.248555e-04

Joint ci ratio: 1.648888e-01	ci left: 2.979393e-04	ci right 3.520225e-04	k: 564	n:1740000
Cons ci ratio: 3.222082e-01	ci left: 7.137835e-05	ci right 9.929614e-05	k: 147	n:1740000
KS ci ratio: 3.424729e-03	ci left: 4.287994e-01	ci right 4.302710e-01	k: 747391	n:1740000
CFHR3   1740000 perm   1494 sec   (1165 perm/sec)   p_kst 4.295351e-01   p_cons 8.448276e-05   p_joint 3.241379e-04

Joint ci ratio: 1.645978e-01	ci left: 2.973325e-04	ci right 3.512008e-04	k: 566	n:1750000
Cons ci ratio: 3.211251e-01	ci left: 7.149577e-05	ci right 9.934614e-05	k: 148	n:1750000
KS ci ratio: 3.414923e-03	ci left: 4.288024e-01	ci right 4.302698e-01	k: 751688	n:1750000
CFHR3   1750000 perm   1509 sec   (1160 perm/sec)   p_kst 4.295360e-01   p_cons 8.457143e-05   p_joint 3.234286e-04

Joint ci ratio: 1.644530e-01	ci left: 2.961879e-04	ci right 3.497970e-04	k: 567	n:1760000
Cons ci ratio: 3.211252e-01	ci left: 7.108954e-05	ci right 9.878168e-05	k: 148	n:1760000
KS ci ratio: 3.405055e-03	ci left: 4.288265e-01	ci right 4.302897e-01	k: 756022	n:1760000
CFHR3   1760000 perm   1525 sec   (1154 perm/sec)   p_kst 4.295580e-01   p_cons 8.409091e-05   p_joint 3.221591e-04

Joint ci ratio: 1.643085e-01	ci left: 2.950562e-04	ci right 3.484089e-04	k: 568	n:1770000
Cons ci ratio: 3.211253e-01	ci left: 7.068790e-05	ci right 9.822360e-05	k: 148	n:1770000
KS ci ratio: 3.395390e-03	ci left: 4.288333e-01	ci right 4.302924e-01	k: 760326	n:1770000
CFHR3   1770000 perm   1540 sec   (1149 perm/sec)   p_kst 4.295627e-01   p_cons 8.361582e-05   p_joint 3.209040e-04

Joint ci ratio: 1.740685e-01	ci left: 2.600404e-04	ci right 3.101484e-04	k: 506	n:1780000
Cons ci ratio: 3.211254e-01	ci left: 7.029078e-05	ci right 9.767178e-05	k: 148	n:1780000
KS ci ratio: 3.393211e-03	ci left: 4.277700e-01	ci right 4.292246e-01	k: 762725	n:1780000
CFHR3   1780000 perm   1556 sec   (1144 perm/sec)   p_kst 4.284972e-01   p_cons 8.314607e-05   p_joint 2.842697e-04

Joint ci ratio: 1.727109e-01	ci left: 2.628630e-04	ci right 3.130787e-04	k: 514	n:1790000
Cons ci ratio: 3.189915e-01	ci left: 7.092567e-05	ci right 9.833290e-05	k: 150	n:1790000
KS ci ratio: 3.383893e-03	ci left: 4.277470e-01	ci right 4.291974e-01	k: 766965	n:1790000
CFHR3   1790000 perm   1571 sec   (1139 perm/sec)   p_kst 4.284721e-01   p_cons 8.379888e-05   p_joint 2.871508e-04

Joint ci ratio: 1.723766e-01	ci left: 2.624658e-04	ci right 3.124984e-04	k: 516	n:1800000
Cons ci ratio: 3.179405e-01	ci left: 7.104279e-05	ci right 9.838642e-05	k: 151	n:1800000
KS ci ratio: 3.374475e-03	ci left: 4.277497e-01	ci right 4.291961e-01	k: 771251	n:1800000
CFHR3   1800000 perm   1587 sec   (1135 perm/sec)   p_kst 4.284728e-01   p_cons 8.388889e-05   p_joint 2.866667e-04

Joint ci ratio: 1.717136e-01	ci left: 2.631305e-04	ci right 3.130769e-04	k: 520	n:1810000
Cons ci ratio: 3.179405e-01	ci left: 7.065029e-05	ci right 9.784285e-05	k: 151	n:1810000
KS ci ratio: 3.365295e-03	ci left: 4.277292e-01	ci right 4.291716e-01	k: 775495	n:1810000
CFHR3   1810000 perm   1602 sec   (1130 perm/sec)   p_kst 4.284503e-01   p_cons 8.342541e-05   p_joint 2.872928e-04

Joint ci ratio: 1.562736e-01	ci left: 3.185961e-04	ci right 3.731243e-04	k: 628	n:1820000
Cons ci ratio: 3.168998e-01	ci left: 7.076778e-05	ci right 9.789833e-05	k: 152	n:1820000
KS ci ratio: 3.355900e-03	ci left: 4.277512e-01	ci right 4.291897e-01	k: 779816	n:1820000
CFHR3   1820000 perm   1618 sec   (1125 perm/sec)   p_kst 4.284703e-01   p_cons 8.351648e-05   p_joint 3.450549e-04

Joint ci ratio: 1.560258e-01	ci left: 3.179053e-04	ci right 3.722210e-04	k: 630	n:1830000
Cons ci ratio: 3.158692e-01	ci left: 7.088413e-05	ci right 9.795306e-05	k: 153	n:1830000
KS ci ratio: 3.346698e-03	ci left: 4.277561e-01	ci right 4.291906e-01	k: 784106	n:1830000
CFHR3   1830000 perm   1634 sec   (1120 perm/sec)   p_kst 4.284732e-01   p_cons 8.360656e-05   p_joint 3.442623e-04

Joint ci ratio: 1.554112e-01	ci left: 3.187891e-04	ci right 3.730212e-04	k: 635	n:1840000
Cons ci ratio: 3.148486e-01	ci left: 7.099936e-05	ci right 9.800706e-05	k: 154	n:1840000
KS ci ratio: 3.337439e-03	ci left: 4.277805e-01	ci right 4.292111e-01	k: 788432	n:1840000
CFHR3   1840000 perm   1650 sec   (1115 perm/sec)   p_kst 4.284957e-01   p_cons 8.369565e-05   p_joint 3.451087e-04

Joint ci ratio: 1.550460e-01	ci left: 3.186245e-04	ci right 3.726895e-04	k: 638	n:1850000
Cons ci ratio: 3.148487e-01	ci left: 7.061558e-05	ci right 9.747729e-05	k: 154	n:1850000
KS ci ratio: 3.328336e-03	ci left: 4.277927e-01	ci right 4.292194e-01	k: 792736	n:1850000
CFHR3   1850000 perm   1665 sec   (1111 perm/sec)   p_kst 4.285059e-01   p_cons 8.324324e-05   p_joint 3.448649e-04

Joint ci ratio: 1.549249e-01	ci left: 3.174283e-04	ci right 3.712442e-04	k: 639	n:1860000
Cons ci ratio: 3.138379e-01	ci left: 7.073115e-05	ci right 9.753313e-05	k: 155	n:1860000
KS ci ratio: 3.319450e-03	ci left: 4.277838e-01	ci right 4.292067e-01	k: 797001	n:1860000
CFHR3   1860000 perm   1681 sec   (1106 perm/sec)   p_kst 4.284952e-01   p_cons 8.333333e-05   p_joint 3.435484e-04

Joint ci ratio: 1.540844e-01	ci left: 3.193294e-04	ci right 3.731469e-04	k: 646	n:1870000
Cons ci ratio: 3.128368e-01	ci left: 7.084563e-05	ci right 9.758823e-05	k: 156	n:1870000
KS ci ratio: 3.310407e-03	ci left: 4.278088e-01	ci right 4.292278e-01	k: 801329	n:1870000
CFHR3   1870000 perm   1697 sec   (1102 perm/sec)   p_kst 4.285182e-01   p_cons 8.342246e-05   p_joint 3.454545e-04

Joint ci ratio: 1.548043e-01	ci left: 3.145626e-04	ci right 3.678474e-04	k: 640	n:1880000
Cons ci ratio: 3.108630e-01	ci left: 7.144938e-05	ci right 9.821596e-05	k: 158	n:1880000
KS ci ratio: 3.301484e-03	ci left: 4.278265e-01	ci right 4.292418e-01	k: 805644	n:1880000
CFHR3   1880000 perm   1713 sec   (1097 perm/sec)   p_kst 4.285340e-01   p_cons 8.404255e-05   p_joint 3.404255e-04

Joint ci ratio: 1.548044e-01	ci left: 3.128982e-04	ci right 3.659011e-04	k: 640	n:1890000
Cons ci ratio: 3.098900e-01	ci left: 7.155923e-05	ci right 9.826647e-05	k: 159	n:1890000
KS ci ratio: 3.292630e-03	ci left: 4.278446e-01	ci right 4.292562e-01	k: 809960	n:1890000
CFHR3   1890000 perm   1730 sec   (1093 perm/sec)   p_kst 4.285503e-01   p_cons 8.412698e-05   p_joint 3.386243e-04

Joint ci ratio: 1.539658e-01	ci left: 3.147933e-04	ci right 3.678017e-04	k: 647	n:1900000
Cons ci ratio: 3.098901e-01	ci left: 7.118260e-05	ci right 9.774929e-05	k: 159	n:1900000
KS ci ratio: 3.283814e-03	ci left: 4.278672e-01	ci right 4.292751e-01	k: 814285	n:1900000
CFHR3   1900000 perm   1746 sec   (1088 perm/sec)   p_kst 4.285711e-01   p_cons 8.368421e-05   p_joint 3.405263e-04

Joint ci ratio: 1.533752e-01	ci left: 3.156623e-04	ci right 3.685944e-04	k: 652	n:1910000
Cons ci ratio: 3.089262e-01	ci left: 7.129284e-05	ci right 9.780159e-05	k: 160	n:1910000
KS ci ratio: 3.275027e-03	ci left: 4.278959e-01	ci right 4.293001e-01	k: 818622	n:1910000
CFHR3   1910000 perm   1762 sec   (1084 perm/sec)   p_kst 4.285979e-01   p_cons 8.376963e-05   p_joint 3.413613e-04

Joint ci ratio: 1.533753e-01	ci left: 3.140183e-04	ci right 3.666747e-04	k: 652	n:1920000
Cons ci ratio: 3.089262e-01	ci left: 7.092152e-05	ci right 9.729221e-05	k: 160	n:1920000
KS ci ratio: 3.266501e-03	ci left: 4.278957e-01	ci right 4.292962e-01	k: 822904	n:1920000
CFHR3   1920000 perm   1779 sec   (1079 perm/sec)   p_kst 4.285958e-01   p_cons 8.333333e-05   p_joint 3.395833e-04

Joint ci ratio: 1.576602e-01	ci left: 2.949618e-04	ci right 3.459354e-04	k: 617	n:1930000
Cons ci ratio: 3.089263e-01	ci left: 7.055405e-05	ci right 9.678811e-05	k: 160	n:1930000
KS ci ratio: 3.258389e-03	ci left: 4.278431e-01	ci right 4.292400e-01	k: 827085	n:1930000
CFHR3   1930000 perm   1796 sec   (1075 perm/sec)   p_kst 4.285415e-01   p_cons 8.290155e-05   p_joint 3.196891e-04

Joint ci ratio: 1.575329e-01	ci left: 2.939365e-04	ci right 3.446880e-04	k: 618	n:1940000
Cons ci ratio: 3.089264e-01	ci left: 7.019036e-05	ci right 9.628921e-05	k: 160	n:1940000
KS ci ratio: 3.250368e-03	ci left: 4.277865e-01	ci right 4.291797e-01	k: 831257	n:1940000
CFHR3   1940000 perm   1812 sec   (1070 perm/sec)   p_kst 4.284830e-01   p_cons 8.247423e-05   p_joint 3.185567e-04

Joint ci ratio: 1.574059e-01	ci left: 2.929218e-04	ci right 3.434534e-04	k: 619	n:1950000
Cons ci ratio: 3.079714e-01	ci left: 7.030355e-05	ci right 9.634780e-05	k: 161	n:1950000
KS ci ratio: 3.241789e-03	ci left: 4.278237e-01	ci right 4.292134e-01	k: 835611	n:1950000
CFHR3   1950000 perm   1829 sec   (1066 perm/sec)   p_kst 4.285185e-01   p_cons 8.256410e-05   p_joint 3.174359e-04

Joint ci ratio: 1.570265e-01	ci left: 2.928977e-04	ci right 3.432919e-04	k: 622	n:1960000
Cons ci ratio: 3.070253e-01	ci left: 7.041570e-05	ci right 9.640568e-05	k: 162	n:1960000
KS ci ratio: 3.233573e-03	ci left: 4.278157e-01	ci right 4.292018e-01	k: 839877	n:1960000
CFHR3   1960000 perm   1845 sec   (1062 perm/sec)   p_kst 4.285087e-01   p_cons 8.265306e-05   p_joint 3.173469e-04

Joint ci ratio: 1.569007e-01	ci left: 2.918986e-04	ci right 3.420768e-04	k: 623	n:1970000
Cons ci ratio: 3.070253e-01	ci left: 7.005825e-05	ci right 9.591631e-05	k: 162	n:1970000
KS ci ratio: 3.225289e-03	ci left: 4.278276e-01	ci right 4.292102e-01	k: 844182	n:1970000
CFHR3   1970000 perm   1861 sec   (1058 perm/sec)   p_kst 4.285188e-01   p_cons 8.223350e-05   p_joint 3.162437e-04

Joint ci ratio: 1.562758e-01	ci left: 2.928506e-04	ci right 3.429733e-04	k: 628	n:1980000
Cons ci ratio: 3.070254e-01	ci left: 6.970442e-05	ci right 9.543189e-05	k: 162	n:1980000
KS ci ratio: 3.217234e-03	ci left: 4.278141e-01	ci right 4.291932e-01	k: 848437	n:1980000
CFHR3   1980000 perm   1878 sec   (1055 perm/sec)   p_kst 4.285035e-01   p_cons 8.181818e-05   p_joint 3.171717e-04

Joint ci ratio: 1.561518e-01	ci left: 2.918619e-04	ci right 3.417719e-04	k: 629	n:1990000
Cons ci ratio: 3.070254e-01	ci left: 6.935415e-05	ci right 9.495234e-05	k: 162	n:1990000
KS ci ratio: 3.209315e-03	ci left: 4.277892e-01	ci right 4.291648e-01	k: 852669	n:1990000
CFHR3   1990000 perm   1894 sec   (1051 perm/sec)   p_kst 4.284769e-01   p_cons 8.140704e-05   p_joint 3.160804e-04

Joint ci ratio: 1.557813e-01	ci left: 2.918440e-04	ci right 3.416216e-04	k: 632	n:2000000
Cons ci ratio: 3.060879e-01	ci left: 6.946892e-05	ci right 9.501591e-05	k: 163	n:2000000
KS ci ratio: 3.201529e-03	ci left: 4.277530e-01	ci right 4.291252e-01	k: 856878	n:2000000
CFHR3   2000000 perm   1911 sec   (1046 perm/sec)   p_kst 4.284390e-01   p_cons 8.150000e-05   p_joint 3.160000e-04

Joint ci ratio: 1.593466e-01	ci left: 2.770107e-04	ci right 3.254431e-04	k: 604	n:2010000
Cons ci ratio: 3.060880e-01	ci left: 6.912330e-05	ci right 9.454320e-05	k: 163	n:2010000
KS ci ratio: 3.193281e-03	ci left: 4.277968e-01	ci right 4.291656e-01	k: 861247	n:2010000
CFHR3   2010000 perm   1928 sec   (1043 perm/sec)   p_kst 4.284811e-01   p_cons 8.109453e-05   p_joint 3.004975e-04

Joint ci ratio: 1.590839e-01	ci left: 2.765900e-04	ci right 3.248615e-04	k: 606	n:2020000
Cons ci ratio: 3.051590e-01	ci left: 6.923820e-05	ci right 9.460806e-05	k: 164	n:2020000
KS ci ratio: 3.185389e-03	ci left: 4.277952e-01	ci right 4.291605e-01	k: 865525	n:2020000
CFHR3   2020000 perm   1945 sec   (1039 perm/sec)   p_kst 4.284777e-01   p_cons 8.118812e-05   p_joint 3.000000e-04

Joint ci ratio: 1.586923e-01	ci left: 2.766466e-04	ci right 3.247978e-04	k: 609	n:2030000
Cons ci ratio: 3.015258e-01	ci left: 7.071763e-05	ci right 9.626195e-05	k: 168	n:2030000
KS ci ratio: 3.177565e-03	ci left: 4.277920e-01	ci right 4.291540e-01	k: 869800	n:2030000
CFHR3   2030000 perm   1961 sec   (1035 perm/sec)   p_kst 4.284729e-01   p_cons 8.275862e-05   p_joint 3.000000e-04

Joint ci ratio: 1.602772e-01	ci left: 2.696428e-04	ci right 3.170888e-04	k: 597	n:2040000
Cons ci ratio: 3.015259e-01	ci left: 7.037097e-05	ci right 9.579008e-05	k: 168	n:2040000
KS ci ratio: 3.169782e-03	ci left: 4.277914e-01	ci right 4.291500e-01	k: 874080	n:2040000
CFHR3   2040000 perm   1979 sec   (1031 perm/sec)   p_kst 4.284706e-01   p_cons 8.235294e-05   p_joint 2.926471e-04

Joint ci ratio: 1.602773e-01	ci left: 2.683275e-04	ci right 3.155420e-04	k: 597	n:2050000
Cons ci ratio: 3.015260e-01	ci left: 7.002770e-05	ci right 9.532281e-05	k: 168	n:2050000
KS ci ratio: 3.162147e-03	ci left: 4.277766e-01	ci right 4.291319e-01	k: 878331	n:2050000
CFHR3   2050000 perm   1996 sec   (1027 perm/sec)   p_kst 4.284541e-01   p_cons 8.195122e-05   p_joint 2.912195e-04

Joint ci ratio: 1.614977e-01	ci left: 2.628318e-04	ci right 3.094657e-04	k: 588	n:2060000
Cons ci ratio: 3.006378e-01	ci left: 7.013653e-05	ci right 9.538207e-05	k: 169	n:2060000
KS ci ratio: 3.154509e-03	ci left: 4.277712e-01	ci right 4.291232e-01	k: 882601	n:2060000
CFHR3   2060000 perm   2014 sec   (1023 perm/sec)   p_kst 4.284471e-01   p_cons 8.203883e-05   p_joint 2.854369e-04

Joint ci ratio: 1.610879e-01	ci left: 2.629529e-04	ci right 3.094784e-04	k: 591	n:2070000
Cons ci ratio: 3.006379e-01	ci left: 6.979771e-05	ci right 9.492129e-05	k: 169	n:2070000
KS ci ratio: 3.146499e-03	ci left: 4.278320e-01	ci right 4.291808e-01	k: 887008	n:2070000
CFHR3   2070000 perm   2032 sec   (1019 perm/sec)   p_kst 4.285063e-01   p_cons 8.164251e-05   p_joint 2.855072e-04

Joint ci ratio: 1.605464e-01	ci left: 2.635344e-04	ci right 3.099909e-04	k: 595	n:2080000
Cons ci ratio: 3.006379e-01	ci left: 6.946214e-05	ci right 9.446494e-05	k: 169	n:2080000
KS ci ratio: 3.138911e-03	ci left: 4.278360e-01	ci right 4.291815e-01	k: 891298	n:2080000
CFHR3   2080000 perm   2050 sec   (1015 perm/sec)   p_kst 4.285087e-01   p_cons 8.125000e-05   p_joint 2.860577e-04

Joint ci ratio: 1.597442e-01	ci left: 2.650292e-04	ci right 3.114934e-04	k: 601	n:2090000
Cons ci ratio: 2.980197e-01	ci left: 7.045742e-05	ci right 9.555583e-05	k: 172	n:2090000
KS ci ratio: 3.131445e-03	ci left: 4.278294e-01	ci right 4.291717e-01	k: 895566	n:2090000
CFHR3   2090000 perm   2068 sec   (1011 perm/sec)   p_kst 4.285005e-01   p_cons 8.229665e-05   p_joint 2.875598e-04

Joint ci ratio: 1.596118e-01	ci left: 2.642243e-04	ci right 3.105054e-04	k: 602	n:2100000
Cons ci ratio: 2.971621e-01	ci left: 7.056255e-05	ci right 9.561243e-05	k: 173	n:2100000
KS ci ratio: 3.123817e-03	ci left: 4.278567e-01	ci right 4.291958e-01	k: 899905	n:2100000
CFHR3   2100000 perm   2085 sec   (1007 perm/sec)   p_kst 4.285262e-01   p_cons 8.238095e-05   p_joint 2.866667e-04

Joint ci ratio: 1.449613e-01	ci left: 3.213300e-04	ci right 3.720010e-04	k: 730	n:2110000
Cons ci ratio: 2.963118e-01	ci left: 7.066679e-05	ci right 9.566840e-05	k: 174	n:2110000
KS ci ratio: 3.116521e-03	ci left: 4.278402e-01	ci right 4.291761e-01	k: 904152	n:2110000
CFHR3   2110000 perm   2103 sec   (1003 perm/sec)   p_kst 4.285081e-01   p_cons 8.246445e-05   p_joint 3.459716e-04

Joint ci ratio: 1.446648e-01	ci left: 3.211781e-04	ci right 3.717126e-04	k: 733	n:2120000
Cons ci ratio: 2.963118e-01	ci left: 7.033345e-05	ci right 9.521714e-05	k: 174	n:2120000
KS ci ratio: 3.109078e-03	ci left: 4.278549e-01	ci right 4.291877e-01	k: 908465	n:2120000
CFHR3   2120000 perm   2121 sec   (1000 perm/sec)   p_kst 4.285212e-01   p_cons 8.207547e-05   p_joint 3.457547e-04

Joint ci ratio: 1.441745e-01	ci left: 3.219328e-04	ci right 3.723996e-04	k: 738	n:2130000
Cons ci ratio: 2.963119e-01	ci left: 7.000325e-05	ci right 9.477012e-05	k: 174	n:2130000
KS ci ratio: 3.101579e-03	ci left: 4.278869e-01	ci right 4.292166e-01	k: 912815	n:2130000
CFHR3   2130000 perm   2138 sec   (996 perm/sec)   p_kst 4.285516e-01   p_cons 8.169014e-05   p_joint 3.464789e-04

Joint ci ratio: 1.437859e-01	ci left: 3.222303e-04	ci right 3.725959e-04	k: 742	n:2140000
Cons ci ratio: 2.963120e-01	ci left: 6.967613e-05	ci right 9.432727e-05	k: 174	n:2140000
KS ci ratio: 3.094269e-03	ci left: 4.278971e-01	ci right 4.292236e-01	k: 917119	n:2140000
CFHR3   2140000 perm   2156 sec   (992 perm/sec)   p_kst 4.285603e-01   p_cons 8.130841e-05   p_joint 3.467290e-04

Joint ci ratio: 1.445666e-01	ci left: 3.171448e-04	ci right 3.670079e-04	k: 734	n:2150000
Cons ci ratio: 2.954690e-01	ci left: 6.978265e-05	ci right 9.438807e-05	k: 175	n:2150000
KS ci ratio: 3.087064e-03	ci left: 4.278988e-01	ci right 4.292223e-01	k: 921405	n:2150000
CFHR3   2150000 perm   2175 sec   (989 perm/sec)   p_kst 4.285605e-01   p_cons 8.139535e-05   p_joint 3.413953e-04

Joint ci ratio: 1.484566e-01	ci left: 2.987285e-04	ci right 3.470721e-04	k: 696	n:2160000
Cons ci ratio: 2.954690e-01	ci left: 6.945958e-05	ci right 9.395110e-05	k: 175	n:2160000
KS ci ratio: 3.079934e-03	ci left: 4.278964e-01	ci right 4.292168e-01	k: 925682	n:2160000
CFHR3   2160000 perm   2193 sec   (985 perm/sec)   p_kst 4.285565e-01   p_cons 8.101852e-05   p_joint 3.222222e-04

Joint ci ratio: 1.483503e-01	ci left: 2.977956e-04	ci right 3.459506e-04	k: 697	n:2170000
Cons ci ratio: 2.954691e-01	ci left: 6.913949e-05	ci right 9.351814e-05	k: 175	n:2170000
KS ci ratio: 3.072606e-03	ci left: 4.279336e-01	ci right 4.292509e-01	k: 930045	n:2170000
CFHR3   2170000 perm   2212 sec   (981 perm/sec)   p_kst 4.285922e-01   p_cons 8.064516e-05   p_joint 3.211982e-04

Joint ci ratio: 1.494250e-01	ci left: 2.920132e-04	ci right 3.396059e-04	k: 687	n:2180000
Cons ci ratio: 2.954691e-01	ci left: 6.882233e-05	ci right 9.308916e-05	k: 175	n:2180000
KS ci ratio: 3.065676e-03	ci left: 4.279150e-01	ci right 4.292293e-01	k: 934287	n:2180000
CFHR3   2180000 perm   2230 sec   (978 perm/sec)   p_kst 4.285720e-01   p_cons 8.027523e-05   p_joint 3.151376e-04

Joint ci ratio: 1.487776e-01	ci left: 2.933174e-04	ci right 3.408970e-04	k: 693	n:2190000
Cons ci ratio: 2.946333e-01	ci left: 6.893090e-05	ci right 9.315442e-05	k: 176	n:2190000
KS ci ratio: 3.058691e-03	ci left: 4.279129e-01	ci right 4.292242e-01	k: 938565	n:2190000
CFHR3   2190000 perm   2249 sec   (974 perm/sec)   p_kst 4.285685e-01   p_cons 8.036530e-05   p_joint 3.164384e-04

Joint ci ratio: 1.485637e-01	ci left: 2.928594e-04	ci right 3.402904e-04	k: 695	n:2200000
Cons ci ratio: 2.946333e-01	ci left: 6.861758e-05	ci right 9.273099e-05	k: 176	n:2200000
KS ci ratio: 3.051578e-03	ci left: 4.279391e-01	ci right 4.292474e-01	k: 942905	n:2200000
CFHR3   2200000 perm   2268 sec   (970 perm/sec)   p_kst 4.285932e-01   p_cons 8.000000e-05   p_joint 3.159091e-04

Joint ci ratio: 1.482445e-01	ci left: 2.928413e-04	ci right 3.401584e-04	k: 698	n:2210000
Cons ci ratio: 2.938045e-01	ci left: 6.872619e-05	ci right 9.279718e-05	k: 177	n:2210000
KS ci ratio: 3.044795e-03	ci left: 4.279198e-01	ci right 4.292252e-01	k: 947145	n:2210000
CFHR3   2210000 perm   2286 sec   (967 perm/sec)   p_kst 4.285724e-01   p_cons 8.009050e-05   p_joint 3.158371e-04

Joint ci ratio: 1.477171e-01	ci left: 2.936910e-04	ci right 3.409618e-04	k: 703	n:2220000
Cons ci ratio: 2.938046e-01	ci left: 6.841661e-05	ci right 9.237918e-05	k: 177	n:2220000
KS ci ratio: 3.038102e-03	ci left: 4.278935e-01	ci right 4.291959e-01	k: 951369	n:2220000
CFHR3   2220000 perm   2305 sec   (963 perm/sec)   p_kst 4.285446e-01   p_cons 7.972973e-05   p_joint 3.166667e-04

Joint ci ratio: 1.474034e-01	ci left: 2.936697e-04	ci right 3.408277e-04	k: 706	n:2230000
Cons ci ratio: 2.938046e-01	ci left: 6.810981e-05	ci right 9.196493e-05	k: 177	n:2230000
KS ci ratio: 3.031068e-03	ci left: 4.279297e-01	ci right 4.292292e-01	k: 955732	n:2230000
CFHR3   2230000 perm   2324 sec   (959 perm/sec)   p_kst 4.285794e-01   p_cons 7.937220e-05   p_joint 3.165919e-04

Joint ci ratio: 1.468848e-01	ci left: 2.945086e-04	ci right 3.416204e-04	k: 711	n:2240000
Cons ci ratio: 2.938047e-01	ci left: 6.780575e-05	ci right 9.155437e-05	k: 177	n:2240000
KS ci ratio: 3.024553e-03	ci left: 4.278893e-01	ci right 4.291859e-01	k: 959924	n:2240000
CFHR3   2240000 perm   2343 sec   (956 perm/sec)   p_kst 4.285375e-01   p_cons 7.901786e-05   p_joint 3.174107e-04

Joint ci ratio: 1.464739e-01	ci left: 2.949122e-04	ci right 3.419451e-04	k: 715	n:2250000
Cons ci ratio: 2.921678e-01	ci left: 6.832796e-05	ci right 9.210149e-05	k: 179	n:2250000
KS ci ratio: 3.017726e-03	ci left: 4.279066e-01	ci right 4.292003e-01	k: 964245	n:2250000
CFHR3   2250000 perm   2362 sec   (953 perm/sec)   p_kst 4.285533e-01   p_cons 7.955556e-05   p_joint 3.177778e-04

Joint ci ratio: 1.532619e-01	ci left: 2.672016e-04	ci right 3.119713e-04	k: 653	n:2260000
Cons ci ratio: 2.905580e-01	ci left: 6.884591e-05	ci right 9.264340e-05	k: 181	n:2260000
KS ci ratio: 3.011150e-03	ci left: 4.278905e-01	ci right 4.291813e-01	k: 968491	n:2260000
CFHR3   2260000 perm   2381 sec   (949 perm/sec)   p_kst 4.285358e-01   p_cons 8.008850e-05   p_joint 2.889381e-04

Joint ci ratio: 1.530281e-01	ci left: 2.668718e-04	ci right 3.115118e-04	k: 655	n:2270000
Cons ci ratio: 2.897630e-01	ci left: 6.895110e-05	ci right 9.270778e-05	k: 182	n:2270000
KS ci ratio: 3.004620e-03	ci left: 4.278742e-01	ci right 4.291621e-01	k: 972736	n:2270000
CFHR3   2270000 perm   2400 sec   (946 perm/sec)   p_kst 4.285181e-01   p_cons 8.017621e-05   p_joint 2.885463e-04

Joint ci ratio: 1.526794e-01	ci left: 2.669667e-04	ci right 3.115116e-04	k: 658	n:2280000
Cons ci ratio: 2.897630e-01	ci left: 6.864868e-05	ci right 9.230117e-05	k: 182	n:2280000
KS ci ratio: 2.998093e-03	ci left: 4.278641e-01	ci right 4.291492e-01	k: 976995	n:2280000
CFHR3   2280000 perm   2420 sec   (942 perm/sec)   p_kst 4.285066e-01   p_cons 7.982456e-05   p_joint 2.885965e-04

Joint ci ratio: 1.521034e-01	ci left: 2.679011e-04	ci right 3.124179e-04	k: 663	n:2290000
Cons ci ratio: 2.881924e-01	ci left: 6.915897e-05	ci right 9.283459e-05	k: 184	n:2290000
KS ci ratio: 2.991386e-03	ci left: 4.278908e-01	ci right 4.291731e-01	k: 981338	n:2290000
CFHR3   2290000 perm   2439 sec   (939 perm/sec)   p_kst 4.285319e-01   p_cons 8.034934e-05   p_joint 2.895197e-04

Joint ci ratio: 1.345885e-01	ci left: 3.438787e-04	ci right 3.939150e-04	k: 847	n:2300000
Cons ci ratio: 2.874167e-01	ci left: 6.926169e-05	ci right 9.289705e-05	k: 185	n:2300000
KS ci ratio: 2.984969e-03	ci left: 4.278769e-01	ci right 4.291564e-01	k: 985588	n:2300000
CFHR3   2300000 perm   2459 sec   (936 perm/sec)   p_kst 4.285165e-01   p_cons 8.043478e-05   p_joint 3.682609e-04

Joint ci ratio: 1.343511e-01	ci left: 3.436451e-04	ci right 3.935521e-04	k: 850	n:2310000
Cons ci ratio: 2.858837e-01	ci left: 6.976542e-05	ci right 9.342277e-05	k: 187	n:2310000
KS ci ratio: 2.978657e-03	ci left: 4.278526e-01	ci right 4.291294e-01	k: 989814	n:2310000
CFHR3   2310000 perm   2478 sec   (932 perm/sec)   p_kst 4.284909e-01   p_cons 8.095238e-05   p_joint 3.679654e-04

Joint ci ratio: 1.342723e-01	ci left: 3.425804e-04	ci right 3.923013e-04	k: 851	n:2320000
Cons ci ratio: 2.858837e-01	ci left: 6.946470e-05	ci right 9.302008e-05	k: 187	n:2320000
KS ci ratio: 2.972173e-03	ci left: 4.278635e-01	ci right 4.291375e-01	k: 994121	n:2320000
CFHR3   2320000 perm   2498 sec   (929 perm/sec)   p_kst 4.285004e-01   p_cons 8.060345e-05   p_joint 3.668103e-04

Joint ci ratio: 1.341150e-01	ci left: 3.419396e-04	ci right 3.915048e-04	k: 853	n:2330000
Cons ci ratio: 2.858838e-01	ci left: 6.916657e-05	ci right 9.262086e-05	k: 187	n:2330000
KS ci ratio: 2.965770e-03	ci left: 4.278679e-01	ci right 4.291391e-01	k: 998413	n:2330000
CFHR3   2330000 perm   2518 sec   (925 perm/sec)   p_kst 4.285034e-01   p_cons 8.025751e-05   p_joint 3.660944e-04

Joint ci ratio: 1.338801e-01	ci left: 3.417174e-04	ci right 3.911567e-04	k: 856	n:2340000
Cons ci ratio: 2.851265e-01	ci left: 6.926774e-05	ci right 9.268291e-05	k: 188	n:2340000
KS ci ratio: 2.959222e-03	ci left: 4.279030e-01	ci right 4.291715e-01	k: 1002777	n:2340000
CFHR3   2340000 perm   2537 sec   (922 perm/sec)   p_kst 4.285372e-01   p_cons 8.034188e-05   p_joint 3.658120e-04

Joint ci ratio: 1.397984e-01	ci left: 3.110840e-04	ci right 3.582467e-04	k: 785	n:2350000
Cons ci ratio: 2.851265e-01	ci left: 6.897298e-05	ci right 9.228852e-05	k: 188	n:2350000
KS ci ratio: 2.953077e-03	ci left: 4.278782e-01	ci right 4.291441e-01	k: 1007001	n:2350000
CFHR3   2350000 perm   2557 sec   (919 perm/sec)   p_kst 4.285111e-01   p_cons 8.000000e-05   p_joint 3.340426e-04

Joint ci ratio: 1.396209e-01	ci left: 3.105837e-04	ci right 3.576057e-04	k: 787	n:2360000
Cons ci ratio: 2.851266e-01	ci left: 6.868072e-05	ci right 9.189747e-05	k: 188	n:2360000
KS ci ratio: 2.946788e-03	ci left: 4.278838e-01	ci right 4.291469e-01	k: 1011296	n:2360000
CFHR3   2360000 perm   2577 sec   (916 perm/sec)   p_kst 4.285153e-01   p_cons 7.966102e-05   p_joint 3.334746e-04

Joint ci ratio: 1.390923e-01	ci left: 3.117166e-04	ci right 3.587167e-04	k: 793	n:2370000
Cons ci ratio: 2.828901e-01	ci left: 6.956661e-05	ci right 9.286545e-05	k: 191	n:2370000
KS ci ratio: 2.940722e-03	ci left: 4.278589e-01	ci right 4.291194e-01	k: 1015519	n:2370000
CFHR3   2370000 perm   2597 sec   (913 perm/sec)   p_kst 4.284890e-01   p_cons 8.059072e-05   p_joint 3.345992e-04

Joint ci ratio: 1.387432e-01	ci left: 3.120291e-04	ci right 3.589485e-04	k: 797	n:2380000
Cons ci ratio: 2.821563e-01	ci left: 6.966471e-05	ci right 9.292511e-05	k: 192	n:2380000
KS ci ratio: 2.934532e-03	ci left: 4.278611e-01	ci right 4.291189e-01	k: 1019806	n:2380000
CFHR3   2380000 perm   2617 sec   (909 perm/sec)   p_kst 4.284899e-01   p_cons 8.067227e-05   p_joint 3.348739e-04

Joint ci ratio: 1.390049e-01	ci left: 3.095119e-04	ci right 3.561479e-04	k: 794	n:2390000
Cons ci ratio: 2.821563e-01	ci left: 6.937323e-05	ci right 9.253631e-05	k: 192	n:2390000
KS ci ratio: 2.928374e-03	ci left: 4.278645e-01	ci right 4.291197e-01	k: 1024096	n:2390000
CFHR3   2390000 perm   2637 sec   (906 perm/sec)   p_kst 4.284921e-01   p_cons 8.033473e-05   p_joint 3.322176e-04

Joint ci ratio: 1.386565e-01	ci left: 3.098311e-04	ci right 3.563884e-04	k: 798	n:2400000
Cons ci ratio: 2.814282e-01	ci left: 6.947140e-05	ci right 9.259677e-05	k: 193	n:2400000
KS ci ratio: 2.922165e-03	ci left: 4.278830e-01	ci right 4.291355e-01	k: 1028422	n:2400000
CFHR3   2400000 perm   2658 sec   (903 perm/sec)   p_kst 4.285092e-01   p_cons 8.041667e-05   p_joint 3.325000e-04

Joint ci ratio: 1.383969e-01	ci left: 3.097472e-04	ci right 3.561976e-04	k: 801	n:2410000
Cons ci ratio: 2.807056e-01	ci left: 6.956883e-05	ci right 9.265666e-05	k: 194	n:2410000
KS ci ratio: 2.916326e-03	ci left: 4.278456e-01	ci right 4.290956e-01	k: 1032614	n:2410000
CFHR3   2410000 perm   2678 sec   (900 perm/sec)   p_kst 4.284705e-01   p_cons 8.049793e-05   p_joint 3.323651e-04

Joint ci ratio: 1.129913e-01	ci left: 4.690148e-04	ci right 5.255801e-04	k: 1202	n:2420000
Cons ci ratio: 2.799886e-01	ci left: 6.966553e-05	ci right 9.271598e-05	k: 195	n:2420000
KS ci ratio: 2.910266e-03	ci left: 4.278516e-01	ci right 4.290990e-01	k: 1036910	n:2420000
CFHR3   2420000 perm   2698 sec   (897 perm/sec)   p_kst 4.284752e-01   p_cons 8.057851e-05   p_joint 4.966942e-04

Joint ci ratio: 1.125710e-01	ci left: 4.706840e-04	ci right 5.272253e-04	k: 1211	n:2430000
Cons ci ratio: 2.799886e-01	ci left: 6.937884e-05	ci right 9.233443e-05	k: 195	n:2430000
KS ci ratio: 2.904271e-03	ci left: 4.278530e-01	ci right 4.290978e-01	k: 1041195	n:2430000
CFHR3   2430000 perm   2718 sec   (894 perm/sec)   p_kst 4.284753e-01   p_cons 8.024691e-05   p_joint 4.983539e-04

Joint ci ratio: 1.122933e-01	ci left: 4.711448e-04	ci right 5.275927e-04	k: 1217	n:2440000
Cons ci ratio: 2.792771e-01	ci left: 6.947560e-05	ci right 9.239451e-05	k: 196	n:2440000
KS ci ratio: 2.898083e-03	ci left: 4.278933e-01	ci right 4.291356e-01	k: 1045575	n:2440000
CFHR3   2440000 perm   2738 sec   (891 perm/sec)   p_kst 4.285143e-01   p_cons 8.032787e-05   p_joint 4.987705e-04

Joint ci ratio: 1.122473e-01	ci left: 4.696184e-04	ci right 5.258589e-04	k: 1218	n:2450000
Cons ci ratio: 2.792772e-01	ci left: 6.919202e-05	ci right 9.201740e-05	k: 196	n:2450000
KS ci ratio: 2.892078e-03	ci left: 4.279088e-01	ci right 4.291485e-01	k: 1049895	n:2450000
CFHR3   2450000 perm   2759 sec   (888 perm/sec)   p_kst 4.285286e-01   p_cons 8.000000e-05   p_joint 4.971429e-04

Joint ci ratio: 1.118352e-01	ci left: 4.712655e-04	ci right 5.274822e-04	k: 1227	n:2460000
Cons ci ratio: 2.792772e-01	ci left: 6.891076e-05	ci right 9.164334e-05	k: 196	n:2460000
KS ci ratio: 2.886056e-03	ci left: 4.279335e-01	ci right 4.291707e-01	k: 1054238	n:2460000
CFHR3   2460000 perm   2779 sec   (885 perm/sec)   p_kst 4.285520e-01   p_cons 7.967480e-05   p_joint 4.987805e-04

Joint ci ratio: 1.115629e-01	ci left: 4.717188e-04	ci right 5.278436e-04	k: 1233	n:2470000
Cons ci ratio: 2.792772e-01	ci left: 6.863176e-05	ci right 9.127232e-05	k: 196	n:2470000
KS ci ratio: 2.880283e-03	ci left: 4.279220e-01	ci right 4.291567e-01	k: 1058492	n:2470000
CFHR3   2470000 perm   2799 sec   (882 perm/sec)   p_kst 4.285393e-01   p_cons 7.935223e-05   p_joint 4.991903e-04

Joint ci ratio: 1.113376e-01	ci left: 4.717766e-04	ci right 5.277875e-04	k: 1238	n:2480000
Cons ci ratio: 2.792773e-01	ci left: 6.835502e-05	ci right 9.090429e-05	k: 196	n:2480000
KS ci ratio: 2.874433e-03	ci left: 4.279295e-01	ci right 4.291618e-01	k: 1062793	n:2480000
CFHR3   2480000 perm   2819 sec   (880 perm/sec)   p_kst 4.285456e-01   p_cons 7.903226e-05   p_joint 4.991935e-04

Joint ci ratio: 1.112479e-01	ci left: 4.706628e-04	ci right 5.264935e-04	k: 1240	n:2490000
Cons ci ratio: 2.792773e-01	ci left: 6.808050e-05	ci right 9.053921e-05	k: 196	n:2490000
KS ci ratio: 2.868675e-03	ci left: 4.279274e-01	ci right 4.291571e-01	k: 1067070	n:2490000
CFHR3   2490000 perm   2840 sec   (877 perm/sec)   p_kst 4.285422e-01   p_cons 7.871486e-05   p_joint 4.979920e-04

Joint ci ratio: 1.109799e-01	ci left: 4.711134e-04	ci right 5.268542e-04	k: 1246	n:2500000
Cons ci ratio: 2.785712e-01	ci left: 6.818020e-05	ci right 9.060496e-05	k: 197	n:2500000
KS ci ratio: 2.862973e-03	ci left: 4.279217e-01	ci right 4.291489e-01	k: 1071338	n:2500000
CFHR3   2500000 perm   2863 sec   (873 perm/sec)   p_kst 4.285352e-01   p_cons 7.880000e-05   p_joint 4.984000e-04

Joint ci ratio: 1.132753e-01	ci left: 4.498745e-04	ci right 5.042768e-04	k: 1196	n:2510000
Cons ci ratio: 2.785712e-01	ci left: 6.790857e-05	ci right 9.024399e-05	k: 197	n:2510000
KS ci ratio: 2.857295e-03	ci left: 4.279176e-01	ci right 4.291424e-01	k: 1075610	n:2510000
CFHR3   2510000 perm   2884 sec   (870 perm/sec)   p_kst 4.285299e-01   p_cons 7.848606e-05   p_joint 4.764940e-04

Joint ci ratio: 1.129925e-01	ci left: 4.504029e-04	ci right 5.047240e-04	k: 1202	n:2520000
Cons ci ratio: 2.785713e-01	ci left: 6.763909e-05	ci right 8.988588e-05	k: 197	n:2520000
KS ci ratio: 2.851542e-03	ci left: 4.279321e-01	ci right 4.291545e-01	k: 1079929	n:2520000
CFHR3   2520000 perm   2905 sec   (868 perm/sec)   p_kst 4.285433e-01   p_cons 7.817460e-05   p_joint 4.769841e-04

Joint ci ratio: 1.128519e-01	ci left: 4.497749e-04	ci right 5.039483e-04	k: 1205	n:2530000
Cons ci ratio: 2.785713e-01	ci left: 6.737174e-05	ci right 8.953060e-05	k: 197	n:2530000
KS ci ratio: 2.845914e-03	ci left: 4.279312e-01	ci right 4.291512e-01	k: 1084209	n:2530000
CFHR3   2530000 perm   2926 sec   (865 perm/sec)   p_kst 4.285411e-01   p_cons 7.786561e-05   p_joint 4.762846e-04

Joint ci ratio: 1.125257e-01	ci left: 4.506824e-04	ci right 5.047978e-04	k: 1212	n:2540000
Cons ci ratio: 2.785714e-01	ci left: 6.710650e-05	ci right 8.917812e-05	k: 197	n:2540000
KS ci ratio: 2.840344e-03	ci left: 4.279259e-01	ci right 4.291435e-01	k: 1088478	n:2540000
CFHR3   2540000 perm   2947 sec   (862 perm/sec)   p_kst 4.285346e-01   p_cons 7.755906e-05   p_joint 4.771654e-04

Joint ci ratio: 1.123407e-01	ci left: 4.504395e-04	ci right 5.044309e-04	k: 1216	n:2550000
Cons ci ratio: 2.785714e-01	ci left: 6.684333e-05	ci right 8.882840e-05	k: 197	n:2550000
KS ci ratio: 2.834826e-03	ci left: 4.279172e-01	ci right 4.291324e-01	k: 1092738	n:2550000
CFHR3   2550000 perm   2968 sec   (859 perm/sec)   p_kst 4.285247e-01   p_cons 7.725490e-05   p_joint 4.768627e-04

Joint ci ratio: 1.121106e-01	ci left: 4.505783e-04	ci right 5.044684e-04	k: 1221	n:2560000
Cons ci ratio: 2.785714e-01	ci left: 6.658222e-05	ci right 8.848142e-05	k: 197	n:2560000
KS ci ratio: 2.829260e-03	ci left: 4.279226e-01	ci right 4.291354e-01	k: 1097034	n:2560000
CFHR3   2560000 perm   2990 sec   (856 perm/sec)   p_kst 4.285289e-01   p_cons 7.695312e-05   p_joint 4.769531e-04

Joint ci ratio: 1.200940e-01	ci left: 3.895067e-04	ci right 4.396457e-04	k: 1064	n:2570000
Cons ci ratio: 2.785715e-01	ci left: 6.632315e-05	ci right 8.813714e-05	k: 197	n:2570000
KS ci ratio: 2.823639e-03	ci left: 4.279431e-01	ci right 4.291535e-01	k: 1101369	n:2570000
CFHR3   2570000 perm   3012 sec   (853 perm/sec)   p_kst 4.285482e-01   p_cons 7.665370e-05   p_joint 4.140078e-04

Joint ci ratio: 1.195339e-01	ci left: 3.917569e-04	ci right 4.419337e-04	k: 1074	n:2580000
Cons ci ratio: 2.771751e-01	ci left: 6.678727e-05	ci right 8.862458e-05	k: 199	n:2580000
KS ci ratio: 2.818178e-03	ci left: 4.279414e-01	ci right 4.291495e-01	k: 1105647	n:2580000
CFHR3   2580000 perm   3033 sec   (851 perm/sec)   p_kst 4.285453e-01   p_cons 7.713178e-05   p_joint 4.162791e-04

Joint ci ratio: 1.193675e-01	ci left: 3.913680e-04	ci right 4.414203e-04	k: 1077	n:2590000
Cons ci ratio: 2.771751e-01	ci left: 6.652940e-05	ci right 8.828241e-05	k: 199	n:2590000
KS ci ratio: 2.812891e-03	ci left: 4.279150e-01	ci right 4.291207e-01	k: 1109861	n:2590000
CFHR3   2590000 perm   3054 sec   (848 perm/sec)   p_kst 4.285178e-01   p_cons 7.683398e-05   p_joint 4.158301e-04

Joint ci ratio: 1.191467e-01	ci left: 3.913553e-04	ci right 4.413068e-04	k: 1081	n:2600000
Cons ci ratio: 2.764847e-01	ci left: 6.663144e-05	ci right 8.835410e-05	k: 200	n:2600000
KS ci ratio: 2.807494e-03	ci left: 4.279130e-01	ci right 4.291164e-01	k: 1114138	n:2600000
CFHR3   2600000 perm   3076 sec   (845 perm/sec)   p_kst 4.285146e-01   p_cons 7.692308e-05   p_joint 4.157692e-04

Joint ci ratio: 1.189271e-01	ci left: 3.913428e-04	ci right 4.411942e-04	k: 1085	n:2610000
Cons ci ratio: 2.764848e-01	ci left: 6.637614e-05	ci right 8.801558e-05	k: 200	n:2610000
KS ci ratio: 2.802131e-03	ci left: 4.279106e-01	ci right 4.291117e-01	k: 1118414	n:2610000
CFHR3   2610000 perm   3097 sec   (843 perm/sec)   p_kst 4.285111e-01   p_cons 7.662835e-05   p_joint 4.157088e-04

Joint ci ratio: 1.188178e-01	ci left: 3.905898e-04	ci right 4.402963e-04	k: 1087	n:2620000
Cons ci ratio: 2.764848e-01	ci left: 6.612280e-05	ci right 8.767965e-05	k: 200	n:2620000
KS ci ratio: 2.796752e-03	ci left: 4.279163e-01	ci right 4.291151e-01	k: 1122711	n:2620000
CFHR3   2620000 perm   3118 sec   (840 perm/sec)   p_kst 4.285156e-01   p_cons 7.633588e-05   p_joint 4.148855e-04

Joint ci ratio: 1.185457e-01	ci left: 3.909493e-04	ci right 4.405797e-04	k: 1092	n:2630000
Cons ci ratio: 2.764849e-01	ci left: 6.587138e-05	ci right 8.734627e-05	k: 200	n:2630000
KS ci ratio: 2.791270e-03	ci left: 4.279455e-01	ci right 4.291421e-01	k: 1127070	n:2630000
CFHR3   2630000 perm   3140 sec   (838 perm/sec)   p_kst 4.285437e-01   p_cons 7.604563e-05   p_joint 4.152091e-04

Joint ci ratio: 1.181678e-01	ci left: 3.920415e-04	ci right 4.416408e-04	k: 1099	n:2640000
Cons ci ratio: 2.737740e-01	ci left: 6.703251e-05	ci right 8.863481e-05	k: 204	n:2640000
KS ci ratio: 2.785934e-03	ci left: 4.279545e-01	ci right 4.291487e-01	k: 1131376	n:2640000
CFHR3   2640000 perm   3162 sec   (835 perm/sec)   p_kst 4.285515e-01   p_cons 7.727273e-05   p_joint 4.162879e-04

Joint ci ratio: 1.179535e-01	ci left: 3.920269e-04	ci right 4.415282e-04	k: 1103	n:2650000
Cons ci ratio: 2.731087e-01	ci left: 6.713105e-05	ci right 8.870351e-05	k: 205	n:2650000
KS ci ratio: 2.780609e-03	ci left: 4.279667e-01	ci right 4.291587e-01	k: 1135691	n:2650000
CFHR3   2650000 perm   3185 sec   (832 perm/sec)   p_kst 4.285626e-01   p_cons 7.735849e-05   p_joint 4.162264e-04

Joint ci ratio: 1.177404e-01	ci left: 3.920126e-04	ci right 4.414164e-04	k: 1107	n:2660000
Cons ci ratio: 2.724482e-01	ci left: 6.722891e-05	ci right 8.877162e-05	k: 206	n:2660000
KS ci ratio: 2.775311e-03	ci left: 4.279796e-01	ci right 4.291694e-01	k: 1140008	n:2660000
CFHR3   2660000 perm   3208 sec   (829 perm/sec)   p_kst 4.285744e-01   p_cons 7.744361e-05   p_joint 4.161654e-04

Joint ci ratio: 1.174757e-01	ci left: 3.923620e-04	ci right 4.416909e-04	k: 1112	n:2670000
Cons ci ratio: 2.724482e-01	ci left: 6.697711e-05	ci right 8.843915e-05	k: 206	n:2670000
KS ci ratio: 2.770079e-03	ci left: 4.279861e-01	ci right 4.291736e-01	k: 1144308	n:2670000
CFHR3   2670000 perm   3230 sec   (827 perm/sec)   p_kst 4.285798e-01   p_cons 7.715356e-05   p_joint 4.164794e-04

Joint ci ratio: 1.173177e-01	ci left: 3.919844e-04	ci right 4.411951e-04	k: 1115	n:2680000
Cons ci ratio: 2.724483e-01	ci left: 6.672720e-05	ci right 8.810915e-05	k: 206	n:2680000
KS ci ratio: 2.765038e-03	ci left: 4.279638e-01	ci right 4.291491e-01	k: 1148531	n:2680000
CFHR3   2680000 perm   3252 sec   (824 perm/sec)   p_kst 4.285563e-01   p_cons 7.686567e-05   p_joint 4.160448e-04

Joint ci ratio: 1.217650e-01	ci left: 3.616761e-04	ci right 4.089270e-04	k: 1035	n:2690000
Cons ci ratio: 2.717925e-01	ci left: 6.682553e-05	ci right 8.817866e-05	k: 207	n:2690000
KS ci ratio: 2.759918e-03	ci left: 4.279606e-01	ci right 4.291437e-01	k: 1152805	n:2690000
CFHR3   2690000 perm   3274 sec   (822 perm/sec)   p_kst 4.285520e-01   p_cons 7.695167e-05   p_joint 3.847584e-04

Joint ci ratio: 1.230188e-01	ci left: 3.527968e-04	ci right 3.993968e-04	k: 1014	n:2700000
Cons ci ratio: 2.717926e-01	ci left: 6.657802e-05	ci right 8.785207e-05	k: 207	n:2700000
KS ci ratio: 2.754701e-03	ci left: 4.279796e-01	ci right 4.291605e-01	k: 1157139	n:2700000
CFHR3   2700000 perm   3296 sec   (819 perm/sec)   p_kst 4.285700e-01   p_cons 7.666667e-05   p_joint 3.755556e-04

Joint ci ratio: 1.228374e-01	ci left: 3.525679e-04	ci right 3.990641e-04	k: 1017	n:2710000
Cons ci ratio: 2.717926e-01	ci left: 6.633235e-05	ci right 8.752789e-05	k: 207	n:2710000
KS ci ratio: 2.749568e-03	ci left: 4.279889e-01	ci right 4.291677e-01	k: 1161447	n:2710000
CFHR3   2710000 perm   3318 sec   (817 perm/sec)   p_kst 4.285782e-01   p_cons 7.638376e-05   p_joint 3.752768e-04

Joint ci ratio: 1.262978e-01	ci left: 3.316808e-04	ci right 3.767470e-04	k: 962	n:2720000
Cons ci ratio: 2.711416e-01	ci left: 6.643111e-05	ci right 8.759871e-05	k: 208	n:2720000
KS ci ratio: 2.744667e-03	ci left: 4.279618e-01	ci right 4.291384e-01	k: 1165656	n:2720000
CFHR3   2720000 perm   3341 sec   (814 perm/sec)   p_kst 4.285500e-01   p_cons 7.647059e-05   p_joint 3.536765e-04

Joint ci ratio: 1.261016e-01	ci left: 3.315301e-04	ci right 3.765005e-04	k: 965	n:2730000
Cons ci ratio: 2.704952e-01	ci left: 6.652920e-05	ci right 8.766894e-05	k: 209	n:2730000
KS ci ratio: 2.739530e-03	ci left: 4.279817e-01	ci right 4.291562e-01	k: 1169993	n:2730000
CFHR3   2730000 perm   3364 sec   (812 perm/sec)   p_kst 4.285689e-01   p_cons 7.655678e-05   p_joint 3.534799e-04

Joint ci ratio: 1.259063e-01	ci left: 3.313805e-04	ci right 3.762558e-04	k: 968	n:2740000
Cons ci ratio: 2.704953e-01	ci left: 6.628639e-05	ci right 8.734899e-05	k: 209	n:2740000
KS ci ratio: 2.734536e-03	ci left: 4.279811e-01	ci right 4.291534e-01	k: 1174274	n:2740000
CFHR3   2740000 perm   3387 sec   (809 perm/sec)   p_kst 4.285672e-01   p_cons 7.627737e-05   p_joint 3.532847e-04

Joint ci ratio: 1.258414e-01	ci left: 3.305277e-04	ci right 3.752627e-04	k: 969	n:2750000
Cons ci ratio: 2.692163e-01	ci left: 6.672343e-05	ci right 8.780771e-05	k: 211	n:2750000
KS ci ratio: 2.729685e-03	ci left: 4.279597e-01	ci right 4.291299e-01	k: 1178498	n:2750000
CFHR3   2750000 perm   3410 sec   (806 perm/sec)   p_kst 4.285447e-01   p_cons 7.672727e-05   p_joint 3.523636e-04

Joint ci ratio: 1.256473e-01	ci left: 3.303829e-04	ci right 3.750242e-04	k: 972	n:2760000
Cons ci ratio: 2.673313e-01	ci left: 6.749554e-05	ci right 8.864945e-05	k: 214	n:2760000
KS ci ratio: 2.724700e-03	ci left: 4.279672e-01	ci right 4.291352e-01	k: 1182801	n:2760000
CFHR3   2760000 perm   3435 sec   (803 perm/sec)   p_kst 4.285511e-01   p_cons 7.753623e-05   p_joint 3.521739e-04

Joint ci ratio: 1.253898e-01	ci left: 3.305889e-04	ci right 3.751597e-04	k: 976	n:2770000
Cons ci ratio: 2.660965e-01	ci left: 6.792562e-05	ci right 8.909959e-05	k: 216	n:2770000
KS ci ratio: 2.719754e-03	ci left: 4.279724e-01	ci right 4.291383e-01	k: 1187098	n:2770000
CFHR3   2770000 perm   3459 sec   (801 perm/sec)   p_kst 4.285552e-01   p_cons 7.797834e-05   p_joint 3.523466e-04

Joint ci ratio: 1.251977e-01	ci left: 3.304450e-04	ci right 3.749231e-04	k: 979	n:2780000
Cons ci ratio: 2.660965e-01	ci left: 6.768128e-05	ci right 8.877909e-05	k: 216	n:2780000
KS ci ratio: 2.714855e-03	ci left: 4.279739e-01	ci right 4.291377e-01	k: 1191385	n:2780000
CFHR3   2780000 perm   3486 sec   (798 perm/sec)   p_kst 4.285558e-01   p_cons 7.769784e-05   p_joint 3.521583e-04

Joint ci ratio: 1.248795e-01	ci left: 3.309967e-04	ci right 3.754275e-04	k: 984	n:2790000
Cons ci ratio: 2.654855e-01	ci left: 6.777324e-05	ci right 8.884314e-05	k: 217	n:2790000
KS ci ratio: 2.710123e-03	ci left: 4.279500e-01	ci right 4.291118e-01	k: 1195601	n:2790000
CFHR3   2790000 perm   3509 sec   (795 perm/sec)   p_kst 4.285308e-01   p_cons 7.777778e-05   p_joint 3.526882e-04

Joint ci ratio: 1.246898e-01	ci left: 3.308525e-04	ci right 3.751915e-04	k: 987	n:2800000
Cons ci ratio: 2.654855e-01	ci left: 6.753119e-05	ci right 8.852584e-05	k: 217	n:2800000
KS ci ratio: 2.705322e-03	ci left: 4.279435e-01	ci right 4.291031e-01	k: 1199865	n:2800000
CFHR3   2800000 perm   3532 sec   (793 perm/sec)   p_kst 4.285232e-01   p_cons 7.750000e-05   p_joint 3.525000e-04

Joint ci ratio: 1.246268e-01	ci left: 3.300199e-04	ci right 3.742233e-04	k: 988	n:2810000
Cons ci ratio: 2.654856e-01	ci left: 6.729087e-05	ci right 8.821081e-05	k: 217	n:2810000
KS ci ratio: 2.700512e-03	ci left: 4.279430e-01	ci right 4.291006e-01	k: 1204146	n:2810000
CFHR3   2810000 perm   3556 sec   (790 perm/sec)   p_kst 4.285217e-01   p_cons 7.722420e-05   p_joint 3.516014e-04

Joint ci ratio: 1.245639e-01	ci left: 3.291932e-04	ci right 3.732619e-04	k: 989	n:2820000
Cons ci ratio: 2.654856e-01	ci left: 6.705225e-05	ci right 8.789800e-05	k: 217	n:2820000
KS ci ratio: 2.695687e-03	ci left: 4.279500e-01	ci right 4.291055e-01	k: 1208448	n:2820000
CFHR3   2820000 perm   3579 sec   (788 perm/sec)   p_kst 4.285277e-01   p_cons 7.695035e-05   p_joint 3.507092e-04

Joint ci ratio: 1.242505e-01	ci left: 3.297417e-04	ci right 3.737647e-04	k: 994	n:2830000
Cons ci ratio: 2.654856e-01	ci left: 6.681531e-05	ci right 8.758741e-05	k: 217	n:2830000
KS ci ratio: 2.690767e-03	ci left: 4.279788e-01	ci right 4.291323e-01	k: 1212812	n:2830000
CFHR3   2830000 perm   3602 sec   (786 perm/sec)   p_kst 4.285555e-01   p_cons 7.667845e-05   p_joint 3.512367e-04

Joint ci ratio: 1.240015e-01	ci left: 3.299454e-04	ci right 3.739008e-04	k: 998	n:2840000
Cons ci ratio: 2.648788e-01	ci left: 6.690875e-05	ci right 8.765447e-05	k: 218	n:2840000
KS ci ratio: 2.685976e-03	ci left: 4.279888e-01	ci right 4.291402e-01	k: 1217123	n:2840000
CFHR3   2840000 perm   3626 sec   (783 perm/sec)   p_kst 4.285644e-01   p_cons 7.676056e-05   p_joint 3.514085e-04

Joint ci ratio: 1.236923e-01	ci left: 3.304877e-04	ci right 3.743975e-04	k: 1003	n:2850000
Cons ci ratio: 2.648788e-01	ci left: 6.667398e-05	ci right 8.734691e-05	k: 218	n:2850000
KS ci ratio: 2.681328e-03	ci left: 4.279773e-01	ci right 4.291267e-01	k: 1221373	n:2850000
CFHR3   2850000 perm   3651 sec   (781 perm/sec)   p_kst 4.285519e-01   p_cons 7.649123e-05   p_joint 3.519298e-04

Joint ci ratio: 1.236308e-01	ci left: 3.296710e-04	ci right 3.734489e-04	k: 1004	n:2860000
Cons ci ratio: 2.648789e-01	ci left: 6.644086e-05	ci right 8.704150e-05	k: 218	n:2860000
KS ci ratio: 2.676691e-03	ci left: 4.279683e-01	ci right 4.291157e-01	k: 1225630	n:2860000
CFHR3   2860000 perm   3674 sec   (778 perm/sec)   p_kst 4.285420e-01   p_cons 7.622378e-05   p_joint 3.510490e-04

Joint ci ratio: 1.235694e-01	ci left: 3.288600e-04	ci right 3.725069e-04	k: 1005	n:2870000
Cons ci ratio: 2.648789e-01	ci left: 6.620935e-05	ci right 8.673823e-05	k: 218	n:2870000
KS ci ratio: 2.671958e-03	ci left: 4.279814e-01	ci right 4.291268e-01	k: 1229950	n:2870000
CFHR3   2870000 perm   3698 sec   (776 perm/sec)   p_kst 4.285540e-01   p_cons 7.595819e-05   p_joint 3.501742e-04

Joint ci ratio: 1.233856e-01	ci left: 3.287276e-04	ci right 3.722873e-04	k: 1008	n:2880000
Cons ci ratio: 2.642762e-01	ci left: 6.630366e-05	ci right 8.680725e-05	k: 219	n:2880000
KS ci ratio: 2.667341e-03	ci left: 4.279777e-01	ci right 4.291211e-01	k: 1234222	n:2880000
CFHR3   2880000 perm   3722 sec   (774 perm/sec)   p_kst 4.285493e-01   p_cons 7.604167e-05   p_joint 3.500000e-04

Joint ci ratio: 1.231417e-01	ci left: 3.289315e-04	ci right 3.724259e-04	k: 1012	n:2890000
Cons ci ratio: 2.642762e-01	ci left: 6.607423e-05	ci right 8.650688e-05	k: 219	n:2890000
KS ci ratio: 2.662618e-03	ci left: 4.279979e-01	ci right 4.291393e-01	k: 1238563	n:2890000
CFHR3   2890000 perm   3746 sec   (771 perm/sec)   p_kst 4.285685e-01   p_cons 7.577855e-05   p_joint 3.501730e-04

Joint ci ratio: 1.244388e-01	ci left: 3.207801e-04	ci right 3.636763e-04	k: 991	n:2900000
Cons ci ratio: 2.630831e-01	ci left: 6.649046e-05	ci right 8.694371e-05	k: 221	n:2900000
KS ci ratio: 2.658015e-03	ci left: 4.280003e-01	ci right 4.291398e-01	k: 1242853	n:2900000
CFHR3   2900000 perm   3771 sec   (769 perm/sec)   p_kst 4.285700e-01   p_cons 7.620690e-05   p_joint 3.417241e-04

Joint ci ratio: 1.243136e-01	ci left: 3.203436e-04	ci right 3.631352e-04	k: 993	n:2910000
Cons ci ratio: 2.624925e-01	ci left: 6.658298e-05	ci right 8.701116e-05	k: 222	n:2910000
KS ci ratio: 2.653341e-03	ci left: 4.280203e-01	ci right 4.291578e-01	k: 1247194	n:2910000
CFHR3   2910000 perm   3795 sec   (767 perm/sec)   p_kst 4.285890e-01   p_cons 7.628866e-05   p_joint 3.412371e-04

Joint ci ratio: 1.240642e-01	ci left: 3.205739e-04	ci right 3.633039e-04	k: 997	n:2920000
Cons ci ratio: 2.619059e-01	ci left: 6.667492e-05	ci right 8.707810e-05	k: 223	n:2920000
KS ci ratio: 2.648860e-03	ci left: 4.280090e-01	ci right 4.291446e-01	k: 1251444	n:2920000
CFHR3   2920000 perm   3820 sec   (764 perm/sec)   p_kst 4.285767e-01   p_cons 7.636986e-05   p_joint 3.414384e-04

Joint ci ratio: 1.236929e-01	ci left: 3.214641e-04	ci right 3.641752e-04	k: 1003	n:2930000
Cons ci ratio: 2.607444e-01	ci left: 6.708524e-05	ci right 8.750811e-05	k: 225	n:2930000
KS ci ratio: 2.644351e-03	ci left: 4.280073e-01	ci right 4.291409e-01	k: 1255722	n:2930000
CFHR3   2930000 perm   3845 sec   (762 perm/sec)   p_kst 4.285741e-01   p_cons 7.679181e-05   p_joint 3.423208e-04

Joint ci ratio: 1.233249e-01	ci left: 3.223484e-04	ci right 3.650403e-04	k: 1009	n:2940000
Cons ci ratio: 2.595982e-01	ci left: 6.749298e-05	ci right 8.793500e-05	k: 227	n:2940000
KS ci ratio: 2.640093e-03	ci left: 4.279631e-01	ci right 4.290948e-01	k: 1259875	n:2940000
CFHR3   2940000 perm   3869 sec   (760 perm/sec)   p_kst 4.285289e-01   p_cons 7.721088e-05   p_joint 3.431973e-04

Joint ci ratio: 1.230207e-01	ci left: 3.228984e-04	ci right 3.655500e-04	k: 1014	n:2950000
Cons ci ratio: 2.590308e-01	ci left: 6.758114e-05	ci right 8.799788e-05	k: 228	n:2950000
KS ci ratio: 2.635735e-03	ci left: 4.279416e-01	ci right 4.290714e-01	k: 1264094	n:2950000
CFHR3   2950000 perm   3895 sec   (757 perm/sec)   p_kst 4.285064e-01   p_cons 7.728814e-05   p_joint 3.437288e-04

Joint ci ratio: 1.227790e-01	ci left: 3.231174e-04	ci right 3.657079e-04	k: 1018	n:2960000
Cons ci ratio: 2.590308e-01	ci left: 6.735282e-05	ci right 8.770059e-05	k: 228	n:2960000
KS ci ratio: 2.631366e-03	ci left: 4.279264e-01	ci right 4.290542e-01	k: 1268331	n:2960000
CFHR3   2960000 perm   3920 sec   (755 perm/sec)   p_kst 4.284902e-01   p_cons 7.702703e-05   p_joint 3.439189e-04

Joint ci ratio: 1.225387e-01	ci left: 3.233349e-04	ci right 3.658647e-04	k: 1022	n:2970000
Cons ci ratio: 2.590309e-01	ci left: 6.712604e-05	ci right 8.740531e-05	k: 228	n:2970000
KS ci ratio: 2.626855e-03	ci left: 4.279418e-01	ci right 4.290678e-01	k: 1272659	n:2970000
CFHR3   2970000 perm   3944 sec   (753 perm/sec)   p_kst 4.285047e-01   p_cons 7.676768e-05   p_joint 3.441077e-04

Joint ci ratio: 1.222998e-01	ci left: 3.235511e-04	ci right 3.660203e-04	k: 1026	n:2980000
Cons ci ratio: 2.590309e-01	ci left: 6.690079e-05	ci right 8.711200e-05	k: 228	n:2980000
KS ci ratio: 2.622471e-03	ci left: 4.279377e-01	ci right 4.290618e-01	k: 1276929	n:2980000
CFHR3   2980000 perm   3970 sec   (751 perm/sec)   p_kst 4.284997e-01   p_cons 7.651007e-05   p_joint 3.442953e-04

Joint ci ratio: 1.220032e-01	ci left: 3.240901e-04	ci right 3.665195e-04	k: 1031	n:2990000
Cons ci ratio: 2.579071e-01	ci left: 6.730261e-05	ci right 8.753279e-05	k: 230	n:2990000
KS ci ratio: 2.618001e-03	ci left: 4.279537e-01	ci right 4.290759e-01	k: 1281259	n:2990000
CFHR3   2990000 perm   3995 sec   (748 perm/sec)   p_kst 4.285147e-01   p_cons 7.692308e-05   p_joint 3.448161e-04

Joint ci ratio: 1.218263e-01	ci left: 3.239793e-04	ci right 3.663282e-04	k: 1034	n:3000000
Cons ci ratio: 2.567977e-01	ci left: 6.770193e-05	ci right 8.795059e-05	k: 232	n:3000000
KS ci ratio: 2.613542e-03	ci left: 4.279719e-01	ci right 4.290922e-01	k: 1285596	n:3000000
CFHR3   3000000 perm   4019 sec   (746 perm/sec)   p_kst 4.285320e-01   p_cons 7.733333e-05   p_joint 3.446667e-04

Joint ci ratio: 1.277005e-01	ci left: 2.929694e-04	ci right 3.332513e-04	k: 941	n:3010000
Cons ci ratio: 2.562484e-01	ci left: 6.778788e-05	ci right 8.801193e-05	k: 233	n:3010000
KS ci ratio: 2.609348e-03	ci left: 4.279445e-01	ci right 4.290629e-01	k: 1289796	n:3010000
CFHR3   3010000 perm   4044 sec   (744 perm/sec)   p_kst 4.285037e-01   p_cons 7.740864e-05   p_joint 3.126246e-04

Joint ci ratio: 1.274976e-01	ci left: 2.929610e-04	ci right 3.331729e-04	k: 944	n:3020000
Cons ci ratio: 2.562484e-01	ci left: 6.756341e-05	ci right 8.772050e-05	k: 233	n:3020000
KS ci ratio: 2.604973e-03	ci left: 4.279550e-01	ci right 4.290716e-01	k: 1294110	n:3020000
CFHR3   3020000 perm   4069 sec   (742 perm/sec)   p_kst 4.285132e-01   p_cons 7.715232e-05   p_joint 3.125828e-04

Joint ci ratio: 1.270947e-01	ci left: 2.939113e-04	ci right 3.341165e-04	k: 950	n:3030000
Cons ci ratio: 2.557026e-01	ci left: 6.764929e-05	ci right 8.778216e-05	k: 234	n:3030000
KS ci ratio: 2.600749e-03	ci left: 4.279414e-01	ci right 4.290561e-01	k: 1298351	n:3030000
CFHR3   3030000 perm   4093 sec   (740 perm/sec)   p_kst 4.284987e-01   p_cons 7.722772e-05   p_joint 3.135314e-04

Joint ci ratio: 1.266956e-01	ci left: 2.948555e-04	ci right 3.350537e-04	k: 956	n:3040000
Cons ci ratio: 2.546214e-01	ci left: 6.804259e-05	ci right 8.819327e-05	k: 236	n:3040000
KS ci ratio: 2.596558e-03	ci left: 4.279252e-01	ci right 4.290381e-01	k: 1302584	n:3040000
CFHR3   3040000 perm   4119 sec   (738 perm/sec)   p_kst 4.284816e-01   p_cons 7.763158e-05   p_joint 3.144737e-04

Joint ci ratio: 1.264317e-01	ci left: 2.951587e-04	ci right 3.353082e-04	k: 960	n:3050000
Cons ci ratio: 2.535537e-01	ci left: 6.843348e-05	ci right 8.860152e-05	k: 238	n:3050000
KS ci ratio: 2.592206e-03	ci left: 4.279436e-01	ci right 4.290546e-01	k: 1306922	n:3050000
CFHR3   3050000 perm   4147 sec   (735 perm/sec)   p_kst 4.284990e-01   p_cons 7.803279e-05   p_joint 3.147541e-04

Joint ci ratio: 1.263660e-01	ci left: 2.945106e-04	ci right 3.345495e-04	k: 961	n:3060000
Cons ci ratio: 2.535538e-01	ci left: 6.820984e-05	ci right 8.831197e-05	k: 238	n:3060000
KS ci ratio: 2.587803e-03	ci left: 4.279755e-01	ci right 4.290848e-01	k: 1311302	n:3060000
CFHR3   3060000 perm   4173 sec   (733 perm/sec)   p_kst 4.285301e-01   p_cons 7.777778e-05   p_joint 3.140523e-04

Joint ci ratio: 1.261694e-01	ci left: 2.944976e-04	ci right 3.344678e-04	k: 964	n:3070000
Cons ci ratio: 2.535538e-01	ci left: 6.798766e-05	ci right 8.802431e-05	k: 238	n:3070000
KS ci ratio: 2.583533e-03	ci left: 4.279861e-01	ci right 4.290935e-01	k: 1315617	n:3070000
CFHR3   3070000 perm   4198 sec   (731 perm/sec)   p_kst 4.285397e-01   p_cons 7.752443e-05   p_joint 3.140065e-04

Joint ci ratio: 1.294305e-01	ci left: 2.784550e-04	ci right 3.172998e-04	k: 916	n:3080000
Cons ci ratio: 2.535538e-01	ci left: 6.776692e-05	ci right 8.773852e-05	k: 238	n:3080000
KS ci ratio: 2.579415e-03	ci left: 4.279719e-01	ci right 4.290776e-01	k: 1319856	n:3080000
CFHR3   3080000 perm   4224 sec   (729 perm/sec)   p_kst 4.285247e-01   p_cons 7.727273e-05   p_joint 2.974026e-04

Joint ci ratio: 1.293600e-01	ci left: 2.778670e-04	ci right 3.166070e-04	k: 917	n:3090000
Cons ci ratio: 2.530250e-01	ci left: 6.785069e-05	ci right 8.779870e-05	k: 239	n:3090000
KS ci ratio: 2.575317e-03	ci left: 4.279578e-01	ci right 4.290617e-01	k: 1324095	n:3090000
CFHR3   3090000 perm   4249 sec   (727 perm/sec)   p_kst 4.285097e-01   p_cons 7.734628e-05   p_joint 2.967638e-04

Joint ci ratio: 1.290791e-01	ci left: 2.782193e-04	ci right 3.169177e-04	k: 921	n:3100000
Cons ci ratio: 2.514582e-01	ci left: 6.853839e-05	ci right 8.854427e-05	k: 242	n:3100000
KS ci ratio: 2.571175e-03	ci left: 4.279558e-01	ci right 4.290579e-01	k: 1328371	n:3100000
CFHR3   3100000 perm   4275 sec   (725 perm/sec)   p_kst 4.285068e-01   p_cons 7.806452e-05   p_joint 2.970968e-04

Joint ci ratio: 1.288696e-01	ci left: 2.782582e-04	ci right 3.168944e-04	k: 924	n:3110000
Cons ci ratio: 2.509424e-01	ci left: 6.861931e-05	ci right 8.860130e-05	k: 243	n:3110000
KS ci ratio: 2.566919e-03	ci left: 4.279795e-01	ci right 4.290798e-01	k: 1332727	n:3110000
CFHR3   3110000 perm   4301 sec   (723 perm/sec)   p_kst 4.285296e-01   p_cons 7.813505e-05   p_joint 2.971061e-04

Joint ci ratio: 1.286611e-01	ci left: 2.782969e-04	ci right 3.168712e-04	k: 927	n:3120000
Cons ci ratio: 2.504297e-01	ci left: 6.869976e-05	ci right 8.865793e-05	k: 244	n:3120000
KS ci ratio: 2.562770e-03	ci left: 4.279864e-01	ci right 4.290849e-01	k: 1337031	n:3120000
CFHR3   3120000 perm   4326 sec   (721 perm/sec)   p_kst 4.285356e-01   p_cons 7.820513e-05   p_joint 2.971154e-04

Joint ci ratio: 1.283159e-01	ci left: 2.789539e-04	ci right 3.175076e-04	k: 932	n:3130000
Cons ci ratio: 2.499202e-01	ci left: 6.877973e-05	ci right 8.871416e-05	k: 245	n:3130000
KS ci ratio: 2.558604e-03	ci left: 4.280006e-01	ci right 4.290973e-01	k: 1341358	n:3130000
CFHR3   3130000 perm   4352 sec   (719 perm/sec)   p_kst 4.285489e-01   p_cons 7.827476e-05   p_joint 2.977636e-04

Joint ci ratio: 1.281786e-01	ci left: 2.786820e-04	ci right 3.171538e-04	k: 934	n:3140000
Cons ci ratio: 2.499202e-01	ci left: 6.856068e-05	ci right 8.843163e-05	k: 245	n:3140000
KS ci ratio: 2.554499e-03	ci left: 4.280067e-01	ci right 4.291017e-01	k: 1345660	n:3140000
CFHR3   3140000 perm   4378 sec   (717 perm/sec)   p_kst 4.285541e-01   p_cons 7.802548e-05   p_joint 2.974522e-04

Joint ci ratio: 1.279053e-01	ci left: 2.790265e-04	ci right 3.174575e-04	k: 938	n:3150000
Cons ci ratio: 2.489104e-01	ci left: 6.893827e-05	ci right 8.882541e-05	k: 247	n:3150000
KS ci ratio: 2.550306e-03	ci left: 4.280334e-01	ci right 4.291267e-01	k: 1350027	n:3150000
CFHR3   3150000 perm   4404 sec   (715 perm/sec)   p_kst 4.285800e-01   p_cons 7.841270e-05   p_joint 2.977778e-04

Joint ci ratio: 1.277014e-01	ci left: 2.790625e-04	ci right 3.174326e-04	k: 941	n:3160000
Cons ci ratio: 2.484101e-01	ci left: 6.901685e-05	ci right 8.888046e-05	k: 248	n:3160000
KS ci ratio: 2.546238e-03	ci left: 4.280400e-01	ci right 4.291316e-01	k: 1354331	n:3160000
CFHR3   3160000 perm   4431 sec   (713 perm/sec)   p_kst 4.285858e-01   p_cons 7.848101e-05   p_joint 2.977848e-04

Joint ci ratio: 1.273638e-01	ci left: 2.797091e-04	ci right 3.180588e-04	k: 946	n:3170000
Cons ci ratio: 2.479128e-01	ci left: 6.909497e-05	ci right 8.893511e-05	k: 249	n:3170000
KS ci ratio: 2.542190e-03	ci left: 4.280463e-01	ci right 4.291362e-01	k: 1358634	n:3170000
CFHR3   3170000 perm   4457 sec   (711 perm/sec)   p_kst 4.285912e-01   p_cons 7.854890e-05   p_joint 2.984227e-04

Joint ci ratio: 1.270957e-01	ci left: 2.800474e-04	ci right 3.183564e-04	k: 950	n:3180000
Cons ci ratio: 2.479128e-01	ci left: 6.887769e-05	ci right 8.865544e-05	k: 249	n:3180000
KS ci ratio: 2.538006e-03	ci left: 4.280827e-01	ci right 4.291709e-01	k: 1363033	n:3180000
CFHR3   3180000 perm   4484 sec   (709 perm/sec)   p_kst 4.286267e-01   p_cons 7.830189e-05   p_joint 2.987421e-04

Joint ci ratio: 1.269623e-01	ci left: 2.797765e-04	ci right 3.180053e-04	k: 952	n:3190000
Cons ci ratio: 2.479128e-01	ci left: 6.866177e-05	ci right 8.837753e-05	k: 249	n:3190000
KS ci ratio: 2.534022e-03	ci left: 4.280841e-01	ci right 4.291706e-01	k: 1367321	n:3190000
CFHR3   3190000 perm   4510 sec   (707 perm/sec)   p_kst 4.286273e-01   p_cons 7.805643e-05   p_joint 2.984326e-04

Joint ci ratio: 1.268293e-01	ci left: 2.795074e-04	ci right 3.176564e-04	k: 954	n:3200000
Cons ci ratio: 2.474185e-01	ci left: 6.874031e-05	ci right 8.843320e-05	k: 250	n:3200000
KS ci ratio: 2.530084e-03	ci left: 4.280802e-01	ci right 4.291649e-01	k: 1371592	n:3200000
CFHR3   3200000 perm   4537 sec   (705 perm/sec)   p_kst 4.286225e-01   p_cons 7.812500e-05   p_joint 2.981250e-04

Joint ci ratio: 1.266967e-01	ci left: 2.792399e-04	ci right 3.173096e-04	k: 956	n:3210000
Cons ci ratio: 2.474185e-01	ci left: 6.852617e-05	ci right 8.815771e-05	k: 250	n:3210000
KS ci ratio: 2.526057e-03	ci left: 4.280972e-01	ci right 4.291802e-01	k: 1375930	n:3210000
CFHR3   3210000 perm   4564 sec   (703 perm/sec)   p_kst 4.286386e-01   p_cons 7.788162e-05   p_joint 2.978193e-04

Joint ci ratio: 1.265645e-01	ci left: 2.789742e-04	ci right 3.169650e-04	k: 958	n:3220000
Cons ci ratio: 2.474185e-01	ci left: 6.831335e-05	ci right 8.788393e-05	k: 250	n:3220000
KS ci ratio: 2.522148e-03	ci left: 4.280948e-01	ci right 4.291762e-01	k: 1380206	n:3220000
CFHR3   3220000 perm   4590 sec   (701 perm/sec)   p_kst 4.286354e-01   p_cons 7.763975e-05   p_joint 2.975155e-04

Joint ci ratio: 1.264328e-01	ci left: 2.787101e-04	ci right 3.166224e-04	k: 960	n:3230000
Cons ci ratio: 2.464386e-01	ci left: 6.868274e-05	ci right 8.826927e-05	k: 252	n:3230000
KS ci ratio: 2.518225e-03	ci left: 4.280986e-01	ci right 4.291783e-01	k: 1384502	n:3230000
CFHR3   3230000 perm   4617 sec   (700 perm/sec)   p_kst 4.286384e-01   p_cons 7.801858e-05   p_joint 2.972136e-04

Joint ci ratio: 1.263014e-01	ci left: 2.784476e-04	ci right 3.162820e-04	k: 962	n:3240000
Cons ci ratio: 2.464386e-01	ci left: 6.847075e-05	ci right 8.799684e-05	k: 252	n:3240000
KS ci ratio: 2.514305e-03	ci left: 4.281055e-01	ci right 4.291835e-01	k: 1388808	n:3240000
CFHR3   3240000 perm   4644 sec   (698 perm/sec)   p_kst 4.286444e-01   p_cons 7.777778e-05   p_joint 2.969136e-04

Joint ci ratio: 1.274316e-01	ci left: 2.725260e-04	ci right 3.099122e-04	k: 945	n:3250000
Cons ci ratio: 2.454703e-01	ci left: 6.883753e-05	ci right 8.837931e-05	k: 254	n:3250000
KS ci ratio: 2.510502e-03	ci left: 4.280930e-01	ci right 4.291693e-01	k: 1393051	n:3250000
CFHR3   3250000 perm   4671 sec   (696 perm/sec)   p_kst 4.286311e-01   p_cons 7.815385e-05   p_joint 2.907692e-04

Joint ci ratio: 1.273644e-01	ci left: 2.719870e-04	ci right 3.092781e-04	k: 946	n:3260000
Cons ci ratio: 2.454703e-01	ci left: 6.862638e-05	ci right 8.810821e-05	k: 254	n:3260000
KS ci ratio: 2.506566e-03	ci left: 4.281099e-01	ci right 4.291847e-01	k: 1397390	n:3260000
CFHR3   3260000 perm   4698 sec   (694 perm/sec)   p_kst 4.286472e-01   p_cons 7.791411e-05   p_joint 2.901840e-04

Joint ci ratio: 1.272301e-01	ci left: 2.717474e-04	ci right 3.089634e-04	k: 948	n:3270000
Cons ci ratio: 2.454703e-01	ci left: 6.841651e-05	ci right 8.783877e-05	k: 254	n:3270000
KS ci ratio: 2.502686e-03	ci left: 4.281195e-01	ci right 4.291926e-01	k: 1401705	n:3270000
CFHR3   3270000 perm   4725 sec   (692 perm/sec)   p_kst 4.286560e-01   p_cons 7.767584e-05   p_joint 2.899083e-04

Joint ci ratio: 1.270295e-01	ci left: 2.718045e-04	ci right 3.089651e-04	k: 951	n:3280000
Cons ci ratio: 2.454703e-01	ci left: 6.820792e-05	ci right 8.757097e-05	k: 254	n:3280000
KS ci ratio: 2.498954e-03	ci left: 4.281034e-01	ci right 4.291748e-01	k: 1405936	n:3280000
CFHR3   3280000 perm   4752 sec   (690 perm/sec)   p_kst 4.286390e-01   p_cons 7.743902e-05   p_joint 2.899390e-04

Joint ci ratio: 1.266972e-01	ci left: 2.724499e-04	ci right 3.095940e-04	k: 956	n:3290000
Cons ci ratio: 2.454704e-01	ci left: 6.800060e-05	ci right 8.730480e-05	k: 254	n:3290000
KS ci ratio: 2.495017e-03	ci left: 4.281311e-01	ci right 4.292009e-01	k: 1410311	n:3290000
CFHR3   3290000 perm   4779 sec   (688 perm/sec)   p_kst 4.286660e-01   p_cons 7.720365e-05   p_joint 2.905775e-04

Joint ci ratio: 1.262362e-01	ci left: 2.736784e-04	ci right 3.108441e-04	k: 963	n:3300000
Cons ci ratio: 2.454704e-01	ci left: 6.779454e-05	ci right 8.704024e-05	k: 254	n:3300000
KS ci ratio: 2.491204e-03	ci left: 4.281378e-01	ci right 4.292060e-01	k: 1414617	n:3300000
CFHR3   3300000 perm   4806 sec   (687 perm/sec)   p_kst 4.286718e-01   p_cons 7.696970e-05   p_joint 2.918182e-04

Joint ci ratio: 1.259101e-01	ci left: 2.743145e-04	ci right 3.114631e-04	k: 968	n:3310000
Cons ci ratio: 2.445134e-01	ci left: 6.815686e-05	ci right 8.741853e-05	k: 256	n:3310000
KS ci ratio: 2.487434e-03	ci left: 4.281393e-01	ci right 4.292059e-01	k: 1418906	n:3310000
CFHR3   3310000 perm   4834 sec   (685 perm/sec)   p_kst 4.286725e-01   p_cons 7.734139e-05   p_joint 2.924471e-04

Joint ci ratio: 1.256510e-01	ci left: 2.746551e-04	ci right 3.117677e-04	k: 972	n:3320000
Cons ci ratio: 2.440390e-01	ci left: 6.823434e-05	ci right 8.747482e-05	k: 257	n:3320000
KS ci ratio: 2.483810e-03	ci left: 4.281155e-01	ci right 4.291804e-01	k: 1423111	n:3320000
CFHR3   3320000 perm   4861 sec   (683 perm/sec)   p_kst 4.286479e-01   p_cons 7.740964e-05   p_joint 2.927711e-04

Joint ci ratio: 1.254577e-01	ci left: 2.747030e-04	ci right 3.117606e-04	k: 975	n:3330000
Cons ci ratio: 2.435674e-01	ci left: 6.831138e-05	ci right 8.753075e-05	k: 258	n:3330000
KS ci ratio: 2.479981e-03	ci left: 4.281353e-01	ci right 4.291987e-01	k: 1427461	n:3330000
CFHR3   3330000 perm   4888 sec   (681 perm/sec)   p_kst 4.286670e-01   p_cons 7.747748e-05   p_joint 2.927928e-04

Joint ci ratio: 1.253294e-01	ci left: 2.744605e-04	ci right 3.114448e-04	k: 977	n:3340000
Cons ci ratio: 2.435675e-01	ci left: 6.810686e-05	ci right 8.726868e-05	k: 258	n:3340000
KS ci ratio: 2.476244e-03	ci left: 4.281404e-01	ci right 4.292022e-01	k: 1431762	n:3340000
CFHR3   3340000 perm   4916 sec   (679 perm/sec)   p_kst 4.286713e-01   p_cons 7.724551e-05   p_joint 2.925150e-04

Joint ci ratio: 1.252015e-01	ci left: 2.742195e-04	ci right 3.111308e-04	k: 979	n:3350000
Cons ci ratio: 2.426324e-01	ci left: 6.846421e-05	ci right 8.764148e-05	k: 260	n:3350000
KS ci ratio: 2.472550e-03	ci left: 4.281404e-01	ci right 4.292006e-01	k: 1436046	n:3350000
CFHR3   3350000 perm   4943 sec   (678 perm/sec)   p_kst 4.286704e-01   p_cons 7.761194e-05   p_joint 2.922388e-04

Joint ci ratio: 1.249467e-01	ci left: 2.745566e-04	ci right 3.114326e-04	k: 983	n:3360000
Cons ci ratio: 2.421689e-01	ci left: 6.853999e-05	ci right 8.769631e-05	k: 261	n:3360000
KS ci ratio: 2.468880e-03	ci left: 4.281386e-01	ci right 4.291972e-01	k: 1440324	n:3360000
CFHR3   3360000 perm   4971 sec   (676 perm/sec)   p_kst 4.286679e-01   p_cons 7.767857e-05   p_joint 2.925595e-04

Joint ci ratio: 1.248199e-01	ci left: 2.743169e-04	ci right 3.111204e-04	k: 985	n:3370000
Cons ci ratio: 2.421690e-01	ci left: 6.833660e-05	ci right 8.743608e-05	k: 261	n:3370000
KS ci ratio: 2.465253e-03	ci left: 4.281318e-01	ci right 4.291888e-01	k: 1444585	n:3370000
CFHR3   3370000 perm   4999 sec   (674 perm/sec)   p_kst 4.286602e-01   p_cons 7.744807e-05   p_joint 2.922849e-04

Joint ci ratio: 1.248200e-01	ci left: 2.735053e-04	ci right 3.102000e-04	k: 985	n:3380000
Cons ci ratio: 2.417081e-01	ci left: 6.841235e-05	ci right 8.749115e-05	k: 262	n:3380000
KS ci ratio: 2.461640e-03	ci left: 4.281253e-01	ci right 4.291808e-01	k: 1448847	n:3380000
CFHR3   3380000 perm   5027 sec   (672 perm/sec)   p_kst 4.286530e-01   p_cons 7.751479e-05   p_joint 2.914201e-04

Joint ci ratio: 1.246936e-01	ci left: 2.732700e-04	ci right 3.098933e-04	k: 987	n:3390000
Cons ci ratio: 2.412499e-01	ci left: 6.848768e-05	ci right 8.754587e-05	k: 263	n:3390000
KS ci ratio: 2.457959e-03	ci left: 4.281356e-01	ci right 4.291896e-01	k: 1453166	n:3390000
CFHR3   3390000 perm   5055 sec   (671 perm/sec)   p_kst 4.286625e-01   p_cons 7.758112e-05   p_joint 2.911504e-04

Joint ci ratio: 1.259756e-01	ci left: 2.667683e-04	ci right 3.029152e-04	k: 967	n:3400000
Cons ci ratio: 2.407943e-01	ci left: 6.856260e-05	ci right 8.760022e-05	k: 264	n:3400000
KS ci ratio: 2.454313e-03	ci left: 4.281421e-01	ci right 4.291945e-01	k: 1457472	n:3400000
CFHR3   3400000 perm   5083 sec   (669 perm/sec)   p_kst 4.286682e-01   p_cons 7.764706e-05   p_joint 2.844118e-04

Joint ci ratio: 1.256515e-01	ci left: 2.674061e-04	ci right 3.035393e-04	k: 972	n:3410000
Cons ci ratio: 2.403412e-01	ci left: 6.863712e-05	ci right 8.765423e-05	k: 265	n:3410000
KS ci ratio: 2.450626e-03	ci left: 4.281600e-01	ci right 4.292108e-01	k: 1461817	n:3410000
CFHR3   3410000 perm   5111 sec   (667 perm/sec)   p_kst 4.286853e-01   p_cons 7.771261e-05   p_joint 2.850440e-04

Joint ci ratio: 1.256515e-01	ci left: 2.666242e-04	ci right 3.026518e-04	k: 972	n:3420000
Cons ci ratio: 2.403412e-01	ci left: 6.843643e-05	ci right 8.739793e-05	k: 265	n:3420000
KS ci ratio: 2.447018e-03	ci left: 4.281652e-01	ci right 4.292145e-01	k: 1466119	n:3420000
CFHR3   3420000 perm   5139 sec   (665 perm/sec)   p_kst 4.286898e-01   p_cons 7.748538e-05   p_joint 2.842105e-04

Joint ci ratio: 1.211285e-01	ci left: 2.867557e-04	ci right 3.240089e-04	k: 1046	n:3430000
Cons ci ratio: 2.398907e-01	ci left: 6.851091e-05	ci right 8.745218e-05	k: 266	n:3430000
KS ci ratio: 2.443465e-03	ci left: 4.281628e-01	ci right 4.292105e-01	k: 1470395	n:3430000
CFHR3   3430000 perm   5168 sec   (664 perm/sec)   p_kst 4.286866e-01   p_cons 7.755102e-05   p_joint 3.049563e-04

Joint ci ratio: 1.209553e-01	ci left: 2.867678e-04	ci right 3.239655e-04	k: 1049	n:3440000
Cons ci ratio: 2.385542e-01	ci left: 6.913158e-05	ci right 8.812222e-05	k: 269	n:3440000
KS ci ratio: 2.439784e-03	ci left: 4.281889e-01	ci right 4.292351e-01	k: 1474769	n:3440000
CFHR3   3440000 perm   5196 sec   (662 perm/sec)   p_kst 4.287119e-01   p_cons 7.819767e-05   p_joint 3.049419e-04

Joint ci ratio: 1.207256e-01	ci left: 2.870610e-04	ci right 3.242209e-04	k: 1053	n:3450000
Cons ci ratio: 2.376755e-01	ci left: 6.947632e-05	ci right 8.848102e-05	k: 271	n:3450000
KS ci ratio: 2.436233e-03	ci left: 4.281922e-01	ci right 4.292369e-01	k: 1479065	n:3450000
CFHR3   3450000 perm   5224 sec   (660 perm/sec)   p_kst 4.287145e-01   p_cons 7.855072e-05   p_joint 3.052174e-04

Joint ci ratio: 1.218291e-01	ci left: 2.809066e-04	ci right 3.176261e-04	k: 1034	n:3460000
Cons ci ratio: 2.376755e-01	ci left: 6.927552e-05	ci right 8.822530e-05	k: 271	n:3460000
KS ci ratio: 2.432769e-03	ci left: 4.281811e-01	ci right 4.292243e-01	k: 1483311	n:3460000
CFHR3   3460000 perm   5253 sec   (659 perm/sec)   p_kst 4.287026e-01   p_cons 7.832370e-05   p_joint 2.988439e-04

Joint ci ratio: 1.214191e-01	ci left: 2.820530e-04	ci right 3.187894e-04	k: 1041	n:3470000
Cons ci ratio: 2.372398e-01	ci left: 6.934692e-05	ci right 8.827634e-05	k: 272	n:3470000
KS ci ratio: 2.429314e-03	ci left: 4.281711e-01	ci right 4.292128e-01	k: 1487561	n:3470000
CFHR3   3470000 perm   5282 sec   (657 perm/sec)   p_kst 4.286919e-01   p_cons 7.838617e-05   p_joint 3.000000e-04

Joint ci ratio: 1.213027e-01	ci left: 2.817997e-04	ci right 3.184654e-04	k: 1043	n:3480000
Cons ci ratio: 2.368065e-01	ci left: 6.941794e-05	ci right 8.832706e-05	k: 273	n:3480000
KS ci ratio: 2.425807e-03	ci left: 4.281748e-01	ci right 4.292150e-01	k: 1491858	n:3480000
CFHR3   3480000 perm   5310 sec   (655 perm/sec)   p_kst 4.286948e-01   p_cons 7.844828e-05   p_joint 2.997126e-04

Joint ci ratio: 1.101515e-01	ci left: 3.427661e-04	ci right 3.829988e-04	k: 1265	n:3490000
Cons ci ratio: 2.363755e-01	ci left: 6.948859e-05	ci right 8.837746e-05	k: 274	n:3490000
KS ci ratio: 2.422357e-03	ci left: 4.281698e-01	ci right 4.292085e-01	k: 1496125	n:3490000
CFHR3   3490000 perm   5339 sec   (654 perm/sec)   p_kst 4.286891e-01   p_cons 7.851003e-05   p_joint 3.624642e-04

Joint ci ratio: 1.122097e-01	ci left: 3.290093e-04	ci right 3.683965e-04	k: 1219	n:3500000
Cons ci ratio: 2.355206e-01	ci left: 6.982770e-05	ci right 8.873010e-05	k: 276	n:3500000
KS ci ratio: 2.418892e-03	ci left: 4.281709e-01	ci right 4.292081e-01	k: 1500413	n:3500000
CFHR3   3500000 perm   5367 sec   (652 perm/sec)   p_kst 4.286894e-01   p_cons 7.885714e-05   p_joint 3.482857e-04

Joint ci ratio: 1.119804e-01	ci left: 3.294565e-04	ci right 3.688114e-04	k: 1224	n:3510000
Cons ci ratio: 2.355206e-01	ci left: 6.962876e-05	ci right 8.847731e-05	k: 276	n:3510000
KS ci ratio: 2.415367e-03	ci left: 4.281873e-01	ci right 4.292231e-01	k: 1504755	n:3510000
CFHR3   3510000 perm   5396 sec   (650 perm/sec)   p_kst 4.287051e-01   p_cons 7.863248e-05   p_joint 3.487179e-04

Joint ci ratio: 1.118436e-01	ci left: 3.293489e-04	ci right 3.686397e-04	k: 1227	n:3520000
Cons ci ratio: 2.350967e-01	ci left: 6.969829e-05	ci right 8.852676e-05	k: 277	n:3520000
KS ci ratio: 2.411848e-03	ci left: 4.282054e-01	ci right 4.292396e-01	k: 1509103	n:3520000
CFHR3   3520000 perm   5426 sec   (649 perm/sec)   p_kst 4.287224e-01   p_cons 7.869318e-05   p_joint 3.485795e-04

Joint ci ratio: 1.117072e-01	ci left: 3.292420e-04	ci right 3.684690e-04	k: 1230	n:3530000
Cons ci ratio: 2.350967e-01	ci left: 6.950085e-05	ci right 8.827598e-05	k: 277	n:3530000
KS ci ratio: 2.408451e-03	ci left: 4.282018e-01	ci right 4.292346e-01	k: 1513375	n:3530000
CFHR3   3530000 perm   5455 sec   (647 perm/sec)   p_kst 4.287181e-01   p_cons 7.847025e-05   p_joint 3.484419e-04

Joint ci ratio: 1.115262e-01	ci left: 3.294104e-04	ci right 3.685896e-04	k: 1234	n:3540000
Cons ci ratio: 2.346750e-01	ci left: 6.957038e-05	ci right 8.832569e-05	k: 278	n:3540000
KS ci ratio: 2.405008e-03	ci left: 4.282104e-01	ci right 4.292417e-01	k: 1517690	n:3540000
CFHR3   3540000 perm   5484 sec   (645 perm/sec)   p_kst 4.287260e-01   p_cons 7.853107e-05   p_joint 3.485876e-04

Joint ci ratio: 1.112562e-01	ci left: 3.301255e-04	ci right 3.692886e-04	k: 1240	n:3550000
Cons ci ratio: 2.342555e-01	ci left: 6.963955e-05	ci right 8.837509e-05	k: 279	n:3550000
KS ci ratio: 2.401655e-03	ci left: 4.282037e-01	ci right 4.292336e-01	k: 1521951	n:3550000
CFHR3   3550000 perm   5513 sec   (644 perm/sec)   p_kst 4.287186e-01   p_cons 7.859155e-05   p_joint 3.492958e-04

Joint ci ratio: 1.112114e-01	ci left: 3.294713e-04	ci right 3.685400e-04	k: 1241	n:3560000
Cons ci ratio: 2.342556e-01	ci left: 6.944394e-05	ci right 8.812685e-05	k: 279	n:3560000
KS ci ratio: 2.398260e-03	ci left: 4.282083e-01	ci right 4.292368e-01	k: 1526252	n:3560000
CFHR3   3560000 perm   5542 sec   (642 perm/sec)   p_kst 4.287225e-01   p_cons 7.837079e-05   p_joint 3.485955e-04

Joint ci ratio: 1.110328e-01	ci left: 3.296377e-04	ci right 3.686592e-04	k: 1245	n:3570000
Cons ci ratio: 2.342556e-01	ci left: 6.924941e-05	ci right 8.788000e-05	k: 279	n:3570000
KS ci ratio: 2.395017e-03	ci left: 4.281849e-01	ci right 4.292119e-01	k: 1530453	n:3570000
CFHR3   3570000 perm   5571 sec   (641 perm/sec)   p_kst 4.286983e-01   p_cons 7.815126e-05   p_joint 3.487395e-04

Joint ci ratio: 1.109883e-01	ci left: 3.289885e-04	ci right 3.679165e-04	k: 1246	n:3580000
Cons ci ratio: 2.342556e-01	ci left: 6.905598e-05	ci right 8.763452e-05	k: 279	n:3580000
KS ci ratio: 2.391679e-03	ci left: 4.281836e-01	ci right 4.292092e-01	k: 1534733	n:3580000
CFHR3   3580000 perm   5601 sec   (639 perm/sec)   p_kst 4.286964e-01   p_cons 7.793296e-05   p_joint 3.480447e-04

Joint ci ratio: 1.108107e-01	ci left: 3.291554e-04	ci right 3.680368e-04	k: 1250	n:3590000
Cons ci ratio: 2.342556e-01	ci left: 6.886362e-05	ci right 8.739042e-05	k: 279	n:3590000
KS ci ratio: 2.388338e-03	ci left: 4.281860e-01	ci right 4.292102e-01	k: 1539026	n:3590000
CFHR3   3590000 perm   5630 sec   (638 perm/sec)   p_kst 4.286981e-01   p_cons 7.771588e-05   p_joint 3.481894e-04

Joint ci ratio: 1.107665e-01	ci left: 3.285111e-04	ci right 3.672999e-04	k: 1251	n:3600000
Cons ci ratio: 2.334234e-01	ci left: 6.919535e-05	ci right 8.773571e-05	k: 281	n:3600000
KS ci ratio: 2.385066e-03	ci left: 4.281770e-01	ci right 4.291997e-01	k: 1543278	n:3600000
CFHR3   3600000 perm   5660 sec   (636 perm/sec)   p_kst 4.286883e-01   p_cons 7.805556e-05   p_joint 3.475000e-04

Joint ci ratio: 1.106781e-01	ci left: 3.281398e-04	ci right 3.668518e-04	k: 1253	n:3610000
Cons ci ratio: 2.326000e-01	ci left: 6.952535e-05	ci right 8.807897e-05	k: 283	n:3610000
KS ci ratio: 2.381713e-03	ci left: 4.281875e-01	ci right 4.292088e-01	k: 1547600	n:3610000
CFHR3   3610000 perm   5690 sec   (634 perm/sec)   p_kst 4.286981e-01   p_cons 7.839335e-05   p_joint 3.470914e-04

Joint ci ratio: 1.104581e-01	ci left: 3.285764e-04	ci right 3.672578e-04	k: 1258	n:3620000
Cons ci ratio: 2.317853e-01	ci left: 6.985364e-05	ci right 8.842022e-05	k: 285	n:3620000
KS ci ratio: 2.378541e-03	ci left: 4.281633e-01	ci right 4.291832e-01	k: 1551797	n:3620000
CFHR3   3620000 perm   5719 sec   (633 perm/sec)   p_kst 4.286732e-01   p_cons 7.872928e-05   p_joint 3.475138e-04

Joint ci ratio: 1.103267e-01	ci left: 3.284748e-04	ci right 3.670954e-04	k: 1261	n:3630000
Cons ci ratio: 2.313811e-01	ci left: 6.992071e-05	ci right 8.846808e-05	k: 286	n:3630000
KS ci ratio: 2.375408e-03	ci left: 4.281341e-01	ci right 4.291525e-01	k: 1555975	n:3630000
CFHR3   3630000 perm   5749 sec   (631 perm/sec)   p_kst 4.286433e-01   p_cons 7.878788e-05   p_joint 3.473829e-04

Joint ci ratio: 1.102395e-01	ci left: 3.281067e-04	ci right 3.666515e-04	k: 1263	n:3640000
Cons ci ratio: 2.313811e-01	ci left: 6.972862e-05	ci right 8.822503e-05	k: 286	n:3640000
KS ci ratio: 2.372189e-03	ci left: 4.281253e-01	ci right 4.291424e-01	k: 1560227	n:3640000
CFHR3   3640000 perm   5778 sec   (630 perm/sec)   p_kst 4.286338e-01   p_cons 7.857143e-05   p_joint 3.469780e-04

Joint ci ratio: 1.098490e-01	ci left: 3.296057e-04	ci right 3.681805e-04	k: 1272	n:3650000
Cons ci ratio: 2.309791e-01	ci left: 6.979569e-05	ci right 8.827313e-05	k: 287	n:3650000
KS ci ratio: 2.369111e-03	ci left: 4.280900e-01	ci right 4.291057e-01	k: 1564382	n:3650000
CFHR3   3650000 perm   5808 sec   (628 perm/sec)   p_kst 4.285978e-01   p_cons 7.863014e-05   p_joint 3.484932e-04

Joint ci ratio: 1.110332e-01	ci left: 3.215318e-04	ci right 3.595939e-04	k: 1245	n:3660000
Cons ci ratio: 2.309791e-01	ci left: 6.960499e-05	ci right 8.803195e-05	k: 287	n:3660000
KS ci ratio: 2.365833e-03	ci left: 4.280989e-01	ci right 4.291132e-01	k: 1568698	n:3660000
CFHR3   3660000 perm   5838 sec   (627 perm/sec)   p_kst 4.286060e-01   p_cons 7.841530e-05   p_joint 3.401639e-04

Joint ci ratio: 1.108998e-01	ci left: 3.214504e-04	ci right 3.594542e-04	k: 1248	n:3670000
Cons ci ratio: 2.305791e-01	ci left: 6.967205e-05	ci right 8.808028e-05	k: 288	n:3670000
KS ci ratio: 2.362740e-03	ci left: 4.280721e-01	ci right 4.290850e-01	k: 1572883	n:3670000
CFHR3   3670000 perm   5868 sec   (625 perm/sec)   p_kst 4.285785e-01   p_cons 7.847411e-05   p_joint 3.400545e-04

Joint ci ratio: 1.107227e-01	ci left: 3.216337e-04	ci right 3.595945e-04	k: 1252	n:3680000
Cons ci ratio: 2.305791e-01	ci left: 6.948273e-05	ci right 8.784094e-05	k: 288	n:3680000
KS ci ratio: 2.359485e-03	ci left: 4.280815e-01	ci right 4.290930e-01	k: 1577201	n:3680000
CFHR3   3680000 perm   5898 sec   (624 perm/sec)   p_kst 4.285872e-01   p_cons 7.826087e-05   p_joint 3.402174e-04

Joint ci ratio: 1.105024e-01	ci left: 3.220796e-04	ci right 3.600125e-04	k: 1257	n:3690000
Cons ci ratio: 2.305792e-01	ci left: 6.929443e-05	ci right 8.760289e-05	k: 288	n:3690000
KS ci ratio: 2.356274e-03	ci left: 4.280847e-01	ci right 4.290948e-01	k: 1581496	n:3690000
CFHR3   3690000 perm   5929 sec   (622 perm/sec)   p_kst 4.285897e-01   p_cons 7.804878e-05   p_joint 3.406504e-04

Joint ci ratio: 1.102834e-01	ci left: 3.225232e-04	ci right 3.604281e-04	k: 1262	n:3700000
Cons ci ratio: 2.301813e-01	ci left: 6.936182e-05	ci right 8.765196e-05	k: 289	n:3700000
KS ci ratio: 2.353009e-03	ci left: 4.281019e-01	ci right 4.291107e-01	k: 1585843	n:3700000
CFHR3   3700000 perm   5959 sec   (621 perm/sec)   p_kst 4.286062e-01   p_cons 7.810811e-05   p_joint 3.410811e-04

Joint ci ratio: 1.102398e-01	ci left: 3.219160e-04	ci right 3.597336e-04	k: 1263	n:3710000
Cons ci ratio: 2.301813e-01	ci left: 6.917486e-05	ci right 8.741571e-05	k: 289	n:3710000
KS ci ratio: 2.349744e-03	ci left: 4.281217e-01	ci right 4.291291e-01	k: 1590200	n:3710000
CFHR3   3710000 perm   5990 sec   (619 perm/sec)   p_kst 4.286253e-01   p_cons 7.789757e-05   p_joint 3.404313e-04

Joint ci ratio: 1.101092e-01	ci left: 3.218348e-04	ci right 3.595952e-04	k: 1266	n:3720000
Cons ci ratio: 2.293916e-01	ci left: 6.949559e-05	ci right 8.774924e-05	k: 291	n:3720000
KS ci ratio: 2.346564e-03	ci left: 4.281263e-01	ci right 4.291324e-01	k: 1594501	n:3720000
CFHR3   3720000 perm   6020 sec   (618 perm/sec)   p_kst 4.286293e-01   p_cons 7.822581e-05   p_joint 3.403226e-04

Joint ci ratio: 1.099791e-01	ci left: 3.217542e-04	ci right 3.594576e-04	k: 1269	n:3730000
Cons ci ratio: 2.289998e-01	ci left: 6.956198e-05	ci right 8.779745e-05	k: 292	n:3730000
KS ci ratio: 2.343322e-03	ci left: 4.281468e-01	ci right 4.291515e-01	k: 1598861	n:3730000
CFHR3   3730000 perm   6051 sec   (616 perm/sec)   p_kst 4.286491e-01   p_cons 7.828418e-05   p_joint 3.402145e-04

Joint ci ratio: 1.098063e-01	ci left: 3.219340e-04	ci right 3.595954e-04	k: 1273	n:3740000
Cons ci ratio: 2.282222e-01	ci left: 6.988012e-05	ci right 8.812803e-05	k: 294	n:3740000
KS ci ratio: 2.340116e-03	ci left: 4.281623e-01	ci right 4.291656e-01	k: 1603203	n:3740000
CFHR3   3740000 perm   6081 sec   (615 perm/sec)   p_kst 4.286639e-01   p_cons 7.860963e-05   p_joint 3.403743e-04

Joint ci ratio: 1.095914e-01	ci left: 3.223722e-04	ci right 3.600063e-04	k: 1278	n:3750000
Cons ci ratio: 2.274524e-01	ci left: 7.019667e-05	ci right 8.845674e-05	k: 296	n:3750000
KS ci ratio: 2.336962e-03	ci left: 4.281697e-01	ci right 4.291717e-01	k: 1607515	n:3750000
CFHR3   3750000 perm   6112 sec   (614 perm/sec)   p_kst 4.286707e-01   p_cons 7.893333e-05   p_joint 3.408000e-04

Joint ci ratio: 1.093778e-01	ci left: 3.228082e-04	ci right 3.604150e-04	k: 1283	n:3760000
Cons ci ratio: 2.263122e-01	ci left: 7.076251e-05	ci right 8.906462e-05	k: 299	n:3760000
KS ci ratio: 2.333809e-03	ci left: 4.281795e-01	ci right 4.291802e-01	k: 1611836	n:3760000
CFHR3   3760000 perm   6142 sec   (612 perm/sec)   p_kst 4.286798e-01   p_cons 7.952128e-05   p_joint 3.412234e-04

Joint ci ratio: 1.092928e-01	ci left: 3.224680e-04	ci right 3.600040e-04	k: 1285	n:3770000
Cons ci ratio: 2.263123e-01	ci left: 7.057481e-05	ci right 8.882838e-05	k: 299	n:3770000
KS ci ratio: 2.330700e-03	ci left: 4.281826e-01	ci right 4.291820e-01	k: 1616132	n:3770000
CFHR3   3770000 perm   6173 sec   (611 perm/sec)   p_kst 4.286822e-01   p_cons 7.931034e-05   p_joint 3.408488e-04

Joint ci ratio: 1.091655e-01	ci left: 3.223869e-04	ci right 3.598670e-04	k: 1288	n:3780000
Cons ci ratio: 2.259360e-01	ci left: 7.063767e-05	ci right 8.887289e-05	k: 300	n:3780000
KS ci ratio: 2.327601e-03	ci left: 4.281862e-01	ci right 4.291843e-01	k: 1620430	n:3780000
CFHR3   3780000 perm   6204 sec   (609 perm/sec)   p_kst 4.286852e-01   p_cons 7.936508e-05   p_joint 3.407407e-04

Joint ci ratio: 1.089123e-01	ci left: 3.230762e-04	ci right 3.605437e-04	k: 1294	n:3790000
Cons ci ratio: 2.259360e-01	ci left: 7.045129e-05	ci right 8.863840e-05	k: 300	n:3790000
KS ci ratio: 2.324470e-03	ci left: 4.281990e-01	ci right 4.291958e-01	k: 1624763	n:3790000
CFHR3   3790000 perm   6235 sec   (608 perm/sec)   p_kst 4.286974e-01   p_cons 7.915567e-05   p_joint 3.414248e-04

Joint ci ratio: 1.086608e-01	ci left: 3.237620e-04	ci right 3.612168e-04	k: 1300	n:3800000
Cons ci ratio: 2.259361e-01	ci left: 7.026589e-05	ci right 8.840514e-05	k: 300	n:3800000
KS ci ratio: 2.321456e-03	ci left: 4.281900e-01	ci right 4.291854e-01	k: 1629013	n:3800000
CFHR3   3800000 perm   6266 sec   (606 perm/sec)   p_kst 4.286876e-01   p_cons 7.894737e-05   p_joint 3.421053e-04

Joint ci ratio: 1.084942e-01	ci left: 3.239336e-04	ci right 3.613471e-04	k: 1304	n:3810000
Cons ci ratio: 2.251891e-01	ci left: 7.057675e-05	ci right 8.872765e-05	k: 302	n:3810000
KS ci ratio: 2.318334e-03	ci left: 4.282061e-01	ci right 4.292003e-01	k: 1633359	n:3810000
CFHR3   3810000 perm   6298 sec   (605 perm/sec)   p_kst 4.287031e-01   p_cons 7.926509e-05   p_joint 3.422572e-04

Joint ci ratio: 1.084942e-01	ci left: 3.230856e-04	ci right 3.604012e-04	k: 1304	n:3820000
Cons ci ratio: 2.251892e-01	ci left: 7.039199e-05	ci right 8.849538e-05	k: 302	n:3820000
KS ci ratio: 2.315232e-03	ci left: 4.282207e-01	ci right 4.292135e-01	k: 1637699	n:3820000
CFHR3   3820000 perm   6329 sec   (604 perm/sec)   p_kst 4.287170e-01   p_cons 7.905759e-05   p_joint 3.413613e-04

Joint ci ratio: 1.082456e-01	ci left: 3.237661e-04	ci right 3.610692e-04	k: 1310	n:3830000
Cons ci ratio: 2.248185e-01	ci left: 7.045458e-05	ci right 8.854011e-05	k: 303	n:3830000
KS ci ratio: 2.312290e-03	ci left: 4.282038e-01	ci right 4.291953e-01	k: 1641919	n:3830000
CFHR3   3830000 perm   6361 sec   (602 perm/sec)   p_kst 4.286995e-01   p_cons 7.911227e-05   p_joint 3.420366e-04

Joint ci ratio: 1.081220e-01	ci left: 3.236831e-04	ci right 3.609313e-04	k: 1313	n:3840000
Cons ci ratio: 2.248185e-01	ci left: 7.027110e-05	ci right 8.830954e-05	k: 303	n:3840000
KS ci ratio: 2.309271e-03	ci left: 4.282057e-01	ci right 4.291959e-01	k: 1646211	n:3840000
CFHR3   3840000 perm   6392 sec   (601 perm/sec)   p_kst 4.287008e-01   p_cons 7.890625e-05   p_joint 3.419271e-04

Joint ci ratio: 1.079578e-01	ci left: 3.238532e-04	ci right 3.610608e-04	k: 1317	n:3850000
Cons ci ratio: 2.240825e-01	ci left: 7.057886e-05	ci right 8.862880e-05	k: 305	n:3850000
KS ci ratio: 2.306300e-03	ci left: 4.282001e-01	ci right 4.291891e-01	k: 1650474	n:3850000
CFHR3   3850000 perm   6423 sec   (599 perm/sec)   p_kst 4.286945e-01   p_cons 7.922078e-05   p_joint 3.420779e-04

Joint ci ratio: 1.078760e-01	ci left: 3.235184e-04	ci right 3.606576e-04	k: 1319	n:3860000
Cons ci ratio: 2.240826e-01	ci left: 7.039601e-05	ci right 8.839919e-05	k: 305	n:3860000
KS ci ratio: 2.303375e-03	ci left: 4.281871e-01	ci right 4.291747e-01	k: 1654708	n:3860000
CFHR3   3860000 perm   6455 sec   (598 perm/sec)   p_kst 4.286808e-01   p_cons 7.901554e-05   p_joint 3.417098e-04

Joint ci ratio: 1.077536e-01	ci left: 3.234367e-04	ci right 3.605217e-04	k: 1322	n:3870000
Cons ci ratio: 2.237173e-01	ci left: 7.045802e-05	ci right 8.844363e-05	k: 306	n:3870000
KS ci ratio: 2.300440e-03	ci left: 4.281784e-01	ci right 4.291648e-01	k: 1658959	n:3870000
CFHR3   3870000 perm   6487 sec   (597 perm/sec)   p_kst 4.286716e-01   p_cons 7.906977e-05   p_joint 3.416021e-04

Joint ci ratio: 1.075101e-01	ci left: 3.241079e-04	ci right 3.611805e-04	k: 1328	n:3880000
Cons ci ratio: 2.233538e-01	ci left: 7.051973e-05	ci right 8.848782e-05	k: 307	n:3880000
KS ci ratio: 2.297484e-03	ci left: 4.281768e-01	ci right 4.291619e-01	k: 1663237	n:3880000
CFHR3   3880000 perm   6518 sec   (595 perm/sec)   p_kst 4.286693e-01   p_cons 7.912371e-05   p_joint 3.422680e-04

Joint ci ratio: 1.102843e-01	ci left: 3.067700e-04	ci right 3.428238e-04	k: 1262	n:3890000
Cons ci ratio: 2.226321e-01	ci left: 7.082387e-05	ci right 8.880316e-05	k: 309	n:3890000
KS ci ratio: 2.294504e-03	ci left: 4.281829e-01	ci right 4.291668e-01	k: 1667545	n:3890000
CFHR3   3890000 perm   6550 sec   (594 perm/sec)   p_kst 4.286748e-01   p_cons 7.943445e-05   p_joint 3.244216e-04

Joint ci ratio: 1.101101e-01	ci left: 3.069808e-04	ci right 3.429987e-04	k: 1266	n:3900000
Cons ci ratio: 2.226322e-01	ci left: 7.064227e-05	ci right 8.857546e-05	k: 309	n:3900000
KS ci ratio: 2.291553e-03	ci left: 4.281852e-01	ci right 4.291677e-01	k: 1671838	n:3900000
CFHR3   3900000 perm   6582 sec   (592 perm/sec)   p_kst 4.286764e-01   p_cons 7.923077e-05   p_joint 3.246154e-04

Joint ci ratio: 1.099800e-01	ci left: 3.069418e-04	ci right 3.429098e-04	k: 1269	n:3910000
Cons ci ratio: 2.226322e-01	ci left: 7.046159e-05	ci right 8.834892e-05	k: 309	n:3910000
KS ci ratio: 2.288625e-03	ci left: 4.281848e-01	ci right 4.291662e-01	k: 1676121	n:3910000
CFHR3   3910000 perm   6614 sec   (591 perm/sec)   p_kst 4.286754e-01   p_cons 7.902813e-05   p_joint 3.245524e-04

Joint ci ratio: 1.099367e-01	ci left: 3.064069e-04	ci right 3.422972e-04	k: 1270	n:3920000
Cons ci ratio: 2.226322e-01	ci left: 7.028184e-05	ci right 8.812354e-05	k: 309	n:3920000
KS ci ratio: 2.285677e-03	ci left: 4.281911e-01	ci right 4.291712e-01	k: 1680430	n:3920000
CFHR3   3920000 perm   6647 sec   (590 perm/sec)   p_kst 4.286811e-01   p_cons 7.882653e-05   p_joint 3.239796e-04

Joint ci ratio: 1.097641e-01	ci left: 3.066171e-04	ci right 3.424719e-04	k: 1274	n:3930000
Cons ci ratio: 2.222740e-01	ci left: 7.034329e-05	ci right 8.816792e-05	k: 310	n:3930000
KS ci ratio: 2.282756e-03	ci left: 4.281944e-01	ci right 4.291732e-01	k: 1684727	n:3930000
CFHR3   3930000 perm   6679 sec   (588 perm/sec)   p_kst 4.286837e-01   p_cons 7.888041e-05   p_joint 3.241730e-04

Joint ci ratio: 1.096782e-01	ci left: 3.063325e-04	ci right 3.421243e-04	k: 1276	n:3940000
Cons ci ratio: 2.219175e-01	ci left: 7.040444e-05	ci right 8.821205e-05	k: 311	n:3940000
KS ci ratio: 2.279875e-03	ci left: 4.281910e-01	ci right 4.291685e-01	k: 1688998	n:3940000
CFHR3   3940000 perm   6711 sec   (587 perm/sec)   p_kst 4.286797e-01   p_cons 7.893401e-05   p_joint 3.238579e-04

Joint ci ratio: 1.095496e-01	ci left: 3.062957e-04	ci right 3.420384e-04	k: 1279	n:3950000
Cons ci ratio: 2.219175e-01	ci left: 7.022620e-05	ci right 8.798872e-05	k: 311	n:3950000
KS ci ratio: 2.276944e-03	ci left: 4.282010e-01	ci right 4.291773e-01	k: 1693322	n:3950000
CFHR3   3950000 perm   6743 sec   (586 perm/sec)   p_kst 4.286891e-01   p_cons 7.873418e-05   p_joint 3.237975e-04

Joint ci ratio: 1.094214e-01	ci left: 3.062590e-04	ci right 3.419530e-04	k: 1282	n:3960000
Cons ci ratio: 2.219175e-01	ci left: 7.004886e-05	ci right 8.776653e-05	k: 311	n:3960000
KS ci ratio: 2.274196e-03	ci left: 4.281739e-01	ci right 4.291490e-01	k: 1697499	n:3960000
CFHR3   3960000 perm   6776 sec   (584 perm/sec)   p_kst 4.286614e-01   p_cons 7.853535e-05   p_joint 3.237374e-04

Joint ci ratio: 1.092937e-01	ci left: 3.062226e-04	ci right 3.418680e-04	k: 1285	n:3970000
Cons ci ratio: 2.219176e-01	ci left: 6.987241e-05	ci right 8.754546e-05	k: 311	n:3970000
KS ci ratio: 2.271381e-03	ci left: 4.281635e-01	ci right 4.291374e-01	k: 1701742	n:3970000
CFHR3   3970000 perm   6808 sec   (583 perm/sec)   p_kst 4.286504e-01   p_cons 7.833753e-05   p_joint 3.236776e-04

Joint ci ratio: 1.091241e-01	ci left: 3.064308e-04	ci right 3.420415e-04	k: 1289	n:3980000
Cons ci ratio: 2.215628e-01	ci left: 6.993416e-05	ci right 8.759068e-05	k: 312	n:3980000
KS ci ratio: 2.268541e-03	ci left: 4.281607e-01	ci right 4.291334e-01	k: 1706015	n:3980000
CFHR3   3980000 perm   6841 sec   (582 perm/sec)   p_kst 4.286470e-01   p_cons 7.839196e-05   p_joint 3.238693e-04

Joint ci ratio: 1.089975e-01	ci left: 3.063941e-04	ci right 3.419566e-04	k: 1292	n:3990000
Cons ci ratio: 2.208582e-01	ci left: 7.023236e-05	ci right 8.790014e-05	k: 314	n:3990000
KS ci ratio: 2.265628e-03	ci left: 4.281762e-01	ci right 4.291477e-01	k: 1710361	n:3990000
CFHR3   3990000 perm   6874 sec   (580 perm/sec)   p_kst 4.286619e-01   p_cons 7.869674e-05   p_joint 3.238095e-04

Joint ci ratio: 1.088292e-01	ci left: 3.066009e-04	ci right 3.421290e-04	k: 1296	n:4000000
Cons ci ratio: 2.205085e-01	ci left: 7.029297e-05	ci right 8.794418e-05	k: 315	n:4000000
KS ci ratio: 2.262807e-03	ci left: 4.281739e-01	ci right 4.291442e-01	k: 1714636	n:4000000
CFHR3   4000000 perm   6907 sec   (579 perm/sec)   p_kst 4.286590e-01   p_cons 7.875000e-05   p_joint 3.240000e-04

Joint ci ratio: 1.087873e-01	ci left: 3.060789e-04	ci right 3.415319e-04	k: 1297	n:4010000
Cons ci ratio: 2.205085e-01	ci left: 7.011767e-05	ci right 8.772487e-05	k: 315	n:4010000
KS ci ratio: 2.259919e-03	ci left: 4.281886e-01	ci right 4.291576e-01	k: 1718979	n:4010000
CFHR3   4010000 perm   6940 sec   (578 perm/sec)   p_kst 4.286731e-01   p_cons 7.855362e-05   p_joint 3.234414e-04

Joint ci ratio: 1.101106e-01	ci left: 2.978171e-04	ci right 3.327600e-04	k: 1266	n:4020000
Cons ci ratio: 2.201604e-01	ci left: 7.017828e-05	ci right 8.776911e-05	k: 316	n:4020000
KS ci ratio: 2.257019e-03	ci left: 4.282082e-01	ci right 4.291760e-01	k: 1723342	n:4020000
CFHR3   4020000 perm   6973 sec   (577 perm/sec)   p_kst 4.286920e-01   p_cons 7.860697e-05   p_joint 3.149254e-04

Joint ci ratio: 1.098940e-01	ci left: 2.982847e-04	ci right 3.332091e-04	k: 1271	n:4030000
Cons ci ratio: 2.198140e-01	ci left: 7.023861e-05	ci right 8.781311e-05	k: 317	n:4030000
KS ci ratio: 2.254263e-03	ci left: 4.281989e-01	ci right 4.291655e-01	k: 1727589	n:4030000
CFHR3   4030000 perm   7005 sec   (575 perm/sec)   p_kst 4.286821e-01   p_cons 7.866005e-05   p_joint 3.153846e-04

Joint ci ratio: 1.097646e-01	ci left: 2.982685e-04	ci right 3.331473e-04	k: 1274	n:4040000
Cons ci ratio: 2.194692e-01	ci left: 7.029866e-05	ci right 8.785687e-05	k: 318	n:4040000
KS ci ratio: 2.251489e-03	ci left: 4.281956e-01	ci right 4.291610e-01	k: 1731860	n:4040000
CFHR3   4040000 perm   7038 sec   (574 perm/sec)   p_kst 4.286782e-01   p_cons 7.871287e-05   p_joint 3.153465e-04

Joint ci ratio: 1.096786e-01	ci left: 2.980123e-04	ci right 3.328321e-04	k: 1276	n:4050000
Cons ci ratio: 2.194692e-01	ci left: 7.012508e-05	ci right 8.763994e-05	k: 318	n:4050000
KS ci ratio: 2.248805e-03	ci left: 4.281750e-01	ci right 4.291392e-01	k: 1736061	n:4050000
CFHR3   4050000 perm   7070 sec   (573 perm/sec)   p_kst 4.286570e-01   p_cons 7.851852e-05   p_joint 3.150617e-04

Joint ci ratio: 1.009934e-01	ci left: 3.521993e-04	ci right 3.898986e-04	k: 1505	n:4060000
Cons ci ratio: 2.191260e-01	ci left: 7.018513e-05	ci right 8.768389e-05	k: 319	n:4060000
KS ci ratio: 2.246046e-03	ci left: 4.281730e-01	ci right 4.291360e-01	k: 1740337	n:4060000
CFHR3   4060000 perm   7102 sec   (572 perm/sec)   p_kst 4.286544e-01   p_cons 7.857143e-05   p_joint 3.706897e-04

Joint ci ratio: 1.008261e-01	ci left: 3.525314e-04	ci right 3.902001e-04	k: 1510	n:4070000
Cons ci ratio: 2.187844e-01	ci left: 7.024492e-05	ci right 8.772761e-05	k: 320	n:4070000
KS ci ratio: 2.243262e-03	ci left: 4.281786e-01	ci right 4.291404e-01	k: 1744644	n:4070000
CFHR3   4070000 perm   7134 sec   (570 perm/sec)   p_kst 4.286595e-01   p_cons 7.862408e-05   p_joint 3.710074e-04

Joint ci ratio: 1.007262e-01	ci left: 3.523841e-04	ci right 3.899975e-04	k: 1513	n:4080000
Cons ci ratio: 2.184444e-01	ci left: 7.030443e-05	ci right 8.777109e-05	k: 321	n:4080000
KS ci ratio: 2.240460e-03	ci left: 4.281903e-01	ci right 4.291510e-01	k: 1748976	n:4080000
CFHR3   4080000 perm   7166 sec   (569 perm/sec)   p_kst 4.286706e-01   p_cons 7.867647e-05   p_joint 3.708333e-04

Joint ci ratio: 1.006598e-01	ci left: 3.519992e-04	ci right 3.895453e-04	k: 1515	n:4090000
Cons ci ratio: 2.184444e-01	ci left: 7.013253e-05	ci right 8.755649e-05	k: 321	n:4090000
KS ci ratio: 2.237679e-03	ci left: 4.281998e-01	ci right 4.291592e-01	k: 1753299	n:4090000
CFHR3   4090000 perm   7203 sec   (568 perm/sec)   p_kst 4.286795e-01   p_cons 7.848411e-05   p_joint 3.704156e-04

Joint ci ratio: 1.005935e-01	ci left: 3.516162e-04	ci right 3.890953e-04	k: 1517	n:4100000
Cons ci ratio: 2.181060e-01	ci left: 7.019205e-05	ci right 8.760015e-05	k: 322	n:4100000
KS ci ratio: 2.234955e-03	ci left: 4.281989e-01	ci right 4.291573e-01	k: 1757580	n:4100000
CFHR3   4100000 perm   7236 sec   (567 perm/sec)   p_kst 4.286780e-01   p_cons 7.853659e-05   p_joint 3.700000e-04

Joint ci ratio: 1.003623e-01	ci left: 3.524211e-04	ci right 3.898945e-04	k: 1524	n:4110000
Cons ci ratio: 2.181060e-01	ci left: 7.002126e-05	ci right 8.738701e-05	k: 322	n:4110000
KS ci ratio: 2.232199e-03	ci left: 4.282074e-01	ci right 4.291645e-01	k: 1761899	n:4110000
CFHR3   4110000 perm   7268 sec   (565 perm/sec)   p_kst 4.286859e-01   p_cons 7.834550e-05   p_joint 3.708029e-04

Joint ci ratio: 1.002966e-01	ci left: 3.520390e-04	ci right 3.894458e-04	k: 1526	n:4120000
Cons ci ratio: 2.177692e-01	ci left: 7.008078e-05	ci right 8.743085e-05	k: 323	n:4120000
KS ci ratio: 2.229416e-03	ci left: 4.282238e-01	ci right 4.291797e-01	k: 1766251	n:4120000
CFHR3   4120000 perm   7302 sec   (564 perm/sec)   p_kst 4.287017e-01   p_cons 7.839806e-05   p_joint 3.703883e-04

Joint ci ratio: 1.001982e-01	ci left: 3.518947e-04	ci right 3.892474e-04	k: 1529	n:4130000
Cons ci ratio: 2.177692e-01	ci left: 6.991109e-05	ci right 8.721916e-05	k: 323	n:4130000
KS ci ratio: 2.226755e-03	ci left: 4.282156e-01	ci right 4.291704e-01	k: 1770502	n:4130000
CFHR3   4130000 perm   7336 sec   (563 perm/sec)   p_kst 4.286930e-01   p_cons 7.820823e-05   p_joint 3.702179e-04

Joint ci ratio: 1.001655e-01	ci left: 3.512802e-04	ci right 3.885548e-04	k: 1530	n:4140000
Cons ci ratio: 2.174339e-01	ci left: 6.997060e-05	ci right 8.726317e-05	k: 324	n:4140000
KS ci ratio: 2.224085e-03	ci left: 4.282116e-01	ci right 4.291653e-01	k: 1774770	n:4140000
CFHR3   4140000 perm   7370 sec   (562 perm/sec)   p_kst 4.286884e-01   p_cons 7.826087e-05   p_joint 3.695652e-04

Joint ci ratio: 1.001001e-01	ci left: 3.509036e-04	ci right 3.881125e-04	k: 1532	n:4150000
Cons ci ratio: 2.174339e-01	ci left: 6.980200e-05	ci right 8.705290e-05	k: 324	n:4150000
KS ci ratio: 2.221467e-03	ci left: 4.281983e-01	ci right 4.291508e-01	k: 1778999	n:4150000
CFHR3   4150000 perm   7403 sec   (561 perm/sec)   p_kst 4.286745e-01   p_cons 7.807229e-05   p_joint 3.691566e-04

Joint ci ratio: 9.695600e-02	ci left: 3.737411e-04	ci right 4.120561e-04	k: 1633	n:4160000
Cons ci ratio: 2.171002e-01	ci left: 6.986151e-05	ci right 8.709708e-05	k: 325	n:4160000
KS ci ratio: 2.218866e-03	ci left: 4.281833e-01	ci right 4.291346e-01	k: 1783221	n:4160000
CFHR3   4160000 perm   7437 sec   (559 perm/sec)   p_kst 4.286589e-01   p_cons 7.812500e-05   p_joint 3.925481e-04

Joint ci ratio: 9.689674e-02	ci left: 3.733128e-04	ci right 4.115592e-04	k: 1635	n:4170000
Cons ci ratio: 2.167680e-01	ci left: 6.992076e-05	ci right 8.714104e-05	k: 326	n:4170000
KS ci ratio: 2.216195e-03	ci left: 4.281859e-01	ci right 4.291361e-01	k: 1787516	n:4170000
CFHR3   4170000 perm   7471 sec   (558 perm/sec)   p_kst 4.286609e-01   p_cons 7.817746e-05   p_joint 3.920863e-04

Joint ci ratio: 9.677850e-02	ci left: 3.733535e-04	ci right 4.115547e-04	k: 1639	n:4180000
Cons ci ratio: 2.164373e-01	ci left: 6.997974e-05	ci right 8.718476e-05	k: 327	n:4180000
KS ci ratio: 2.213558e-03	ci left: 4.281829e-01	ci right 4.291320e-01	k: 1791788	n:4180000
CFHR3   4180000 perm   7506 sec   (557 perm/sec)   p_kst 4.286574e-01   p_cons 7.822967e-05   p_joint 3.921053e-04

Joint ci ratio: 9.671956e-02	ci left: 3.729282e-04	ci right 4.110613e-04	k: 1641	n:4190000
Cons ci ratio: 2.164373e-01	ci left: 6.981272e-05	ci right 8.697668e-05	k: 327	n:4190000
KS ci ratio: 2.210870e-03	ci left: 4.281934e-01	ci right 4.291413e-01	k: 1796116	n:4190000
CFHR3   4190000 perm   7540 sec   (556 perm/sec)   p_kst 4.286673e-01   p_cons 7.804296e-05   p_joint 3.916468e-04

Joint ci ratio: 9.657263e-02	ci left: 3.732020e-04	ci right 4.113019e-04	k: 1646	n:4200000
Cons ci ratio: 2.161081e-01	ci left: 6.987170e-05	ci right 8.702056e-05	k: 328	n:4200000
KS ci ratio: 2.208288e-03	ci left: 4.281826e-01	ci right 4.291294e-01	k: 1800355	n:4200000
CFHR3   4200000 perm   7574 sec   (555 perm/sec)   p_kst 4.286560e-01   p_cons 7.809524e-05   p_joint 3.919048e-04

Joint ci ratio: 9.645557e-02	ci left: 3.732427e-04	ci right 4.112979e-04	k: 1650	n:4210000
Cons ci ratio: 2.157804e-01	ci left: 6.993042e-05	ci right 8.706422e-05	k: 329	n:4210000
KS ci ratio: 2.205707e-03	ci left: 4.281735e-01	ci right 4.291192e-01	k: 1804601	n:4210000
CFHR3   4210000 perm   7608 sec   (553 perm/sec)   p_kst 4.286463e-01   p_cons 7.814727e-05   p_joint 3.919240e-04

Joint ci ratio: 1.528056e-01	ci left: 1.440093e-04	ci right 1.680597e-04	k: 657	n:4220000
Cons ci ratio: 4.251794e-01	ci left: 1.587721e-05	ci right 2.464395e-05	k: 84	n:4220000
KS ci ratio: 2.203097e-03	ci left: 4.281730e-01	ci right 4.291176e-01	k: 1808883	n:4220000
CFHR3   4220000 perm   7642 sec   (552 perm/sec)   p_kst 4.286453e-01   p_cons 1.990521e-05   p_joint 1.556872e-04

Joint ci ratio: 1.525739e-01	ci left: 1.441236e-04	ci right 1.681533e-04	k: 659	n:4230000
Cons ci ratio: 4.251794e-01	ci left: 1.583967e-05	ci right 2.458569e-05	k: 84	n:4230000
KS ci ratio: 2.200453e-03	ci left: 4.281820e-01	ci right 4.291254e-01	k: 1813205	n:4230000
CFHR3   4230000 perm   7676 sec   (551 perm/sec)   p_kst 4.286537e-01   p_cons 1.985816e-05   p_joint 1.557920e-04

Joint ci ratio: 1.522283e-01	ci left: 1.444643e-04	ci right 1.684912e-04	k: 662	n:4240000
Cons ci ratio: 4.251794e-01	ci left: 1.580232e-05	ci right 2.452771e-05	k: 84	n:4240000
KS ci ratio: 2.197868e-03	ci left: 4.281801e-01	ci right 4.291224e-01	k: 1817481	n:4240000
CFHR3   4240000 perm   7710 sec   (550 perm/sec)   p_kst 4.286512e-01   p_cons 1.981132e-05   p_joint 1.561321e-04

Joint ci ratio: 1.518850e-01	ci left: 1.448034e-04	ci right 1.688275e-04	k: 665	n:4250000
Cons ci ratio: 4.251794e-01	ci left: 1.576513e-05	ci right 2.446999e-05	k: 84	n:4250000
KS ci ratio: 2.195129e-03	ci left: 4.282144e-01	ci right 4.291556e-01	k: 1821911	n:4250000
CFHR3   4250000 perm   7745 sec   (549 perm/sec)   p_kst 4.286849e-01   p_cons 1.976471e-05   p_joint 1.564706e-04

Joint ci ratio: 1.517711e-01	ci left: 1.446893e-04	ci right 1.686748e-04	k: 666	n:4260000
Cons ci ratio: 4.251794e-01	ci left: 1.572813e-05	ci right 2.441255e-05	k: 84	n:4260000
KS ci ratio: 2.192547e-03	ci left: 4.282159e-01	ci right 4.291560e-01	k: 1826202	n:4260000
CFHR3   4260000 perm   7780 sec   (548 perm/sec)   p_kst 4.286859e-01   p_cons 1.971831e-05   p_joint 1.563380e-04

Joint ci ratio: 1.516575e-01	ci left: 1.445758e-04	ci right 1.685229e-04	k: 667	n:4270000
Cons ci ratio: 4.251794e-01	ci left: 1.569129e-05	ci right 2.435538e-05	k: 84	n:4270000
KS ci ratio: 2.190018e-03	ci left: 4.282076e-01	ci right 4.291466e-01	k: 1830451	n:4270000
CFHR3   4270000 perm   7815 sec   (546 perm/sec)   p_kst 4.286770e-01   p_cons 1.967213e-05   p_joint 1.562061e-04

Joint ci ratio: 1.515441e-01	ci left: 1.444628e-04	ci right 1.683716e-04	k: 668	n:4280000
Cons ci ratio: 4.227002e-01	ci left: 1.586334e-05	ci right 2.455691e-05	k: 85	n:4280000
KS ci ratio: 2.187438e-03	ci left: 4.282126e-01	ci right 4.291506e-01	k: 1834757	n:4280000
CFHR3   4280000 perm   7850 sec   (545 perm/sec)   p_kst 4.286815e-01   p_cons 1.985981e-05   p_joint 1.560748e-04

Joint ci ratio: 1.512054e-01	ci left: 1.447988e-04	ci right 1.687049e-04	k: 671	n:4290000
Cons ci ratio: 4.227002e-01	ci left: 1.582637e-05	ci right 2.449967e-05	k: 85	n:4290000
KS ci ratio: 2.184905e-03	ci left: 4.282090e-01	ci right 4.291459e-01	k: 1839026	n:4290000
CFHR3   4290000 perm   7886 sec   (544 perm/sec)   p_kst 4.286774e-01   p_cons 1.981352e-05   p_joint 1.564103e-04

Joint ci ratio: 1.509809e-01	ci left: 1.449096e-04	ci right 1.687953e-04	k: 673	n:4300000
Cons ci ratio: 4.227002e-01	ci left: 1.578956e-05	ci right 2.444269e-05	k: 85	n:4300000
KS ci ratio: 2.182361e-03	ci left: 4.282101e-01	ci right 4.291458e-01	k: 1843315	n:4300000
CFHR3   4300000 perm   7921 sec   (543 perm/sec)   p_kst 4.286779e-01   p_cons 1.976744e-05   p_joint 1.565116e-04

Joint ci ratio: 1.508690e-01	ci left: 1.447967e-04	ci right 1.686444e-04	k: 674	n:4310000
Cons ci ratio: 4.227002e-01	ci left: 1.575293e-05	ci right 2.438598e-05	k: 85	n:4310000
KS ci ratio: 2.179807e-03	ci left: 4.282153e-01	ci right 4.291500e-01	k: 1847622	n:4310000
CFHR3   4310000 perm   7956 sec   (542 perm/sec)   p_kst 4.286826e-01   p_cons 1.972158e-05   p_joint 1.563805e-04

Joint ci ratio: 1.507574e-01	ci left: 1.446842e-04	ci right 1.684942e-04	k: 675	n:4320000
Cons ci ratio: 4.202638e-01	ci left: 1.592339e-05	ci right 2.458543e-05	k: 86	n:4320000
KS ci ratio: 2.177255e-03	ci left: 4.282221e-01	ci right 4.291557e-01	k: 1851936	n:4320000
CFHR3   4320000 perm   7991 sec   (541 perm/sec)   p_kst 4.286889e-01   p_cons 1.990741e-05   p_joint 1.562500e-04

Joint ci ratio: 1.507574e-01	ci left: 1.443501e-04	ci right 1.681051e-04	k: 675	n:4330000
Cons ci ratio: 4.202638e-01	ci left: 1.588661e-05	ci right 2.452865e-05	k: 86	n:4330000
KS ci ratio: 2.174707e-03	ci left: 4.282299e-01	ci right 4.291624e-01	k: 1856254	n:4330000
CFHR3   4330000 perm   8027 sec   (539 perm/sec)   p_kst 4.286961e-01   p_cons 1.986143e-05   p_joint 1.558891e-04

Joint ci ratio: 1.506461e-01	ci left: 1.442392e-04	ci right 1.679569e-04	k: 676	n:4340000
Cons ci ratio: 4.202639e-01	ci left: 1.585001e-05	ci right 2.447213e-05	k: 86	n:4340000
KS ci ratio: 2.172166e-03	ci left: 4.282382e-01	ci right 4.291697e-01	k: 1860575	n:4340000
CFHR3   4340000 perm   8062 sec   (538 perm/sec)   p_kst 4.287039e-01   p_cons 1.981567e-05   p_joint 1.557604e-04

Joint ci ratio: 1.505349e-01	ci left: 1.441288e-04	ci right 1.678093e-04	k: 677	n:4350000
Cons ci ratio: 4.202639e-01	ci left: 1.581357e-05	ci right 2.441587e-05	k: 86	n:4350000
KS ci ratio: 2.169744e-03	ci left: 4.282215e-01	ci right 4.291519e-01	k: 1864787	n:4350000
CFHR3   4350000 perm   8097 sec   (537 perm/sec)   p_kst 4.286867e-01   p_cons 1.977011e-05   p_joint 1.556322e-04

Joint ci ratio: 1.500928e-01	ci left: 1.446812e-04	ci right 1.683763e-04	k: 681	n:4360000
Cons ci ratio: 4.202639e-01	ci left: 1.577730e-05	ci right 2.435987e-05	k: 86	n:4360000
KS ci ratio: 2.167317e-03	ci left: 4.282079e-01	ci right 4.291372e-01	k: 1869012	n:4360000
CFHR3   4360000 perm   8133 sec   (536 perm/sec)   p_kst 4.286725e-01   p_cons 1.972477e-05   p_joint 1.561927e-04

Joint ci ratio: 1.500928e-01	ci left: 1.443501e-04	ci right 1.679910e-04	k: 681	n:4370000
Cons ci ratio: 4.202639e-01	ci left: 1.574120e-05	ci right 2.430413e-05	k: 86	n:4370000
KS ci ratio: 2.164822e-03	ci left: 4.282115e-01	ci right 4.291397e-01	k: 1873312	n:4370000
CFHR3   4370000 perm   8169 sec   (535 perm/sec)   p_kst 4.286755e-01   p_cons 1.967963e-05   p_joint 1.558352e-04

Joint ci ratio: 1.500929e-01	ci left: 1.440205e-04	ci right 1.676075e-04	k: 681	n:4380000
Cons ci ratio: 4.202639e-01	ci left: 1.570526e-05	ci right 2.424864e-05	k: 86	n:4380000
KS ci ratio: 2.162371e-03	ci left: 4.282072e-01	ci right 4.291344e-01	k: 1877578	n:4380000
CFHR3   4380000 perm   8204 sec   (534 perm/sec)   p_kst 4.286708e-01   p_cons 1.963470e-05   p_joint 1.554795e-04

Joint ci ratio: 1.524588e-01	ci left: 1.390899e-04	ci right 1.622612e-04	k: 660	n:4390000
Cons ci ratio: 4.202639e-01	ci left: 1.566948e-05	ci right 2.419341e-05	k: 86	n:4390000
KS ci ratio: 2.159833e-03	ci left: 4.282245e-01	ci right 4.291506e-01	k: 1881938	n:4390000
CFHR3   4390000 perm   8240 sec   (533 perm/sec)   p_kst 4.286875e-01   p_cons 1.958998e-05   p_joint 1.503417e-04

Joint ci ratio: 1.522287e-01	ci left: 1.392110e-04	ci right 1.623643e-04	k: 662	n:4400000
Cons ci ratio: 4.202639e-01	ci left: 1.563387e-05	ci right 2.413842e-05	k: 86	n:4400000
KS ci ratio: 2.157375e-03	ci left: 4.282255e-01	ci right 4.291505e-01	k: 1886227	n:4400000
CFHR3   4400000 perm   8276 sec   (532 perm/sec)   p_kst 4.286880e-01   p_cons 1.954545e-05   p_joint 1.504545e-04

Joint ci ratio: 1.518854e-01	ci left: 1.395497e-04	ci right 1.627022e-04	k: 665	n:4410000
Cons ci ratio: 4.178692e-01	ci left: 1.580126e-05	ci right 2.433422e-05	k: 87	n:4410000
KS ci ratio: 2.154985e-03	ci left: 4.282129e-01	ci right 4.291369e-01	k: 1890456	n:4410000
CFHR3   4410000 perm   8312 sec   (531 perm/sec)   p_kst 4.286748e-01   p_cons 1.972789e-05   p_joint 1.507937e-04

Joint ci ratio: 1.518855e-01	ci left: 1.392340e-04	ci right 1.623341e-04	k: 665	n:4420000
Cons ci ratio: 4.178692e-01	ci left: 1.576551e-05	ci right 2.427917e-05	k: 87	n:4420000
KS ci ratio: 2.152563e-03	ci left: 4.282096e-01	ci right 4.291326e-01	k: 1894726	n:4420000
CFHR3   4420000 perm   8348 sec   (529 perm/sec)   p_kst 4.286710e-01   p_cons 1.968326e-05   p_joint 1.504525e-04

Joint ci ratio: 1.517716e-01	ci left: 1.391369e-04	ci right 1.622020e-04	k: 666	n:4430000
Cons ci ratio: 4.155149e-01	ci left: 1.593199e-05	ci right 2.447364e-05	k: 88	n:4430000
KS ci ratio: 2.150190e-03	ci left: 4.281969e-01	ci right 4.291188e-01	k: 1898954	n:4430000
CFHR3   4430000 perm   8384 sec   (528 perm/sec)   p_kst 4.286578e-01   p_cons 1.986456e-05   p_joint 1.503386e-04

Joint ci ratio: 1.516579e-01	ci left: 1.390402e-04	ci right 1.620704e-04	k: 667	n:4440000
Cons ci ratio: 4.155150e-01	ci left: 1.589610e-05	ci right 2.441852e-05	k: 88	n:4440000
KS ci ratio: 2.147726e-03	ci left: 4.282067e-01	ci right 4.291276e-01	k: 1903282	n:4440000
CFHR3   4440000 perm   8421 sec   (527 perm/sec)   p_kst 4.286671e-01   p_cons 1.981982e-05   p_joint 1.502252e-04

Joint ci ratio: 1.514314e-01	ci left: 1.391601e-04	ci right 1.621727e-04	k: 669	n:4450000
Cons ci ratio: 4.155150e-01	ci left: 1.586038e-05	ci right 2.436364e-05	k: 88	n:4450000
KS ci ratio: 2.145285e-03	ci left: 4.282134e-01	ci right 4.291332e-01	k: 1907596	n:4450000
CFHR3   4450000 perm   8457 sec   (526 perm/sec)   p_kst 4.286733e-01   p_cons 1.977528e-05   p_joint 1.503371e-04

Joint ci ratio: 1.509813e-01	ci left: 1.397110e-04	ci right 1.627399e-04	k: 673	n:4460000
Cons ci ratio: 4.155150e-01	ci left: 1.582482e-05	ci right 2.430902e-05	k: 88	n:4460000
KS ci ratio: 2.142816e-03	ci left: 4.282281e-01	ci right 4.291469e-01	k: 1911946	n:4460000
CFHR3   4460000 perm   8493 sec   (525 perm/sec)   p_kst 4.286874e-01   p_cons 1.973094e-05   p_joint 1.508969e-04

Joint ci ratio: 1.509814e-01	ci left: 1.393985e-04	ci right 1.623758e-04	k: 673	n:4470000
Cons ci ratio: 4.155150e-01	ci left: 1.578942e-05	ci right 2.425463e-05	k: 88	n:4470000
KS ci ratio: 2.140475e-03	ci left: 4.282157e-01	ci right 4.291334e-01	k: 1916175	n:4470000
CFHR3   4470000 perm   8529 sec   (524 perm/sec)   p_kst 4.286745e-01   p_cons 1.968680e-05   p_joint 1.505593e-04

Joint ci ratio: 1.507578e-01	ci left: 1.395169e-04	ci right 1.624766e-04	k: 675	n:4480000
Cons ci ratio: 4.132001e-01	ci left: 1.595412e-05	ci right 2.444685e-05	k: 89	n:4480000
KS ci ratio: 2.138090e-03	ci left: 4.282149e-01	ci right 4.291316e-01	k: 1920456	n:4480000
CFHR3   4480000 perm   8565 sec   (523 perm/sec)   p_kst 4.286732e-01   p_cons 1.986607e-05   p_joint 1.506696e-04

Joint ci ratio: 1.505353e-01	ci left: 1.396348e-04	ci right 1.625770e-04	k: 677	n:4490000
Cons ci ratio: 4.132001e-01	ci left: 1.591858e-05	ci right 2.439241e-05	k: 89	n:4490000
KS ci ratio: 2.135695e-03	ci left: 4.282184e-01	ci right 4.291341e-01	k: 1924756	n:4490000
CFHR3   4490000 perm   8602 sec   (522 perm/sec)   p_kst 4.286762e-01   p_cons 1.982183e-05   p_joint 1.507795e-04

Joint ci ratio: 1.504244e-01	ci left: 1.395384e-04	ci right 1.624463e-04	k: 678	n:4500000
Cons ci ratio: 4.132001e-01	ci left: 1.588321e-05	ci right 2.433820e-05	k: 89	n:4500000
KS ci ratio: 2.133332e-03	ci left: 4.282162e-01	ci right 4.291310e-01	k: 1929031	n:4500000
CFHR3   4500000 perm   8639 sec   (521 perm/sec)   p_kst 4.286736e-01   p_cons 1.977778e-05   p_joint 1.506667e-04

Joint ci ratio: 1.503138e-01	ci left: 1.394424e-04	ci right 1.623161e-04	k: 679	n:4510000
Cons ci ratio: 4.132001e-01	ci left: 1.584799e-05	ci right 2.428424e-05	k: 89	n:4510000
KS ci ratio: 2.130954e-03	ci left: 4.282195e-01	ci right 4.291332e-01	k: 1933330	n:4510000
CFHR3   4510000 perm   8675 sec   (520 perm/sec)   p_kst 4.286763e-01   p_cons 1.973392e-05   p_joint 1.505543e-04

Joint ci ratio: 1.503138e-01	ci left: 1.391339e-04	ci right 1.619570e-04	k: 679	n:4520000
Cons ci ratio: 4.132001e-01	ci left: 1.581293e-05	ci right 2.423051e-05	k: 89	n:4520000
KS ci ratio: 2.128631e-03	ci left: 4.282118e-01	ci right 4.291245e-01	k: 1937580	n:4520000
CFHR3   4520000 perm   8711 sec   (519 perm/sec)   p_kst 4.286681e-01   p_cons 1.969027e-05   p_joint 1.502212e-04

Joint ci ratio: 1.499833e-01	ci left: 1.394641e-04	ci right 1.622866e-04	k: 682	n:4530000
Cons ci ratio: 4.132001e-01	ci left: 1.577802e-05	ci right 2.417702e-05	k: 89	n:4530000
KS ci ratio: 2.126333e-03	ci left: 4.282001e-01	ci right 4.291117e-01	k: 1941811	n:4530000
CFHR3   4530000 perm   8748 sec   (518 perm/sec)   p_kst 4.286558e-01   p_cons 1.964680e-05   p_joint 1.505519e-04

Joint ci ratio: 1.499833e-01	ci left: 1.391569e-04	ci right 1.619292e-04	k: 682	n:4540000
Cons ci ratio: 4.132001e-01	ci left: 1.574327e-05	ci right 2.412377e-05	k: 89	n:4540000
KS ci ratio: 2.123992e-03	ci left: 4.282002e-01	ci right 4.291109e-01	k: 1946096	n:4540000
CFHR3   4540000 perm   8784 sec   (517 perm/sec)   p_kst 4.286555e-01   p_cons 1.960352e-05   p_joint 1.502203e-04

Joint ci ratio: 1.499834e-01	ci left: 1.388511e-04	ci right 1.615733e-04	k: 682	n:4550000
Cons ci ratio: 4.132001e-01	ci left: 1.570867e-05	ci right 2.407075e-05	k: 89	n:4550000
KS ci ratio: 2.121712e-03	ci left: 4.281879e-01	ci right 4.290975e-01	k: 1950324	n:4550000
CFHR3   4550000 perm   8821 sec   (516 perm/sec)   p_kst 4.286426e-01   p_cons 1.956044e-05   p_joint 1.498901e-04

Joint ci ratio: 1.496550e-01	ci left: 1.391798e-04	ci right 1.619015e-04	k: 685	n:4560000
Cons ci ratio: 4.132002e-01	ci left: 1.567422e-05	ci right 2.401796e-05	k: 89	n:4560000
KS ci ratio: 2.119343e-03	ci left: 4.281979e-01	ci right 4.291066e-01	k: 1954654	n:4560000
CFHR3   4560000 perm   8858 sec   (515 perm/sec)   p_kst 4.286522e-01   p_cons 1.951754e-05   p_joint 1.502193e-04

Joint ci ratio: 1.495461e-01	ci left: 1.390859e-04	ci right 1.617742e-04	k: 686	n:4570000
Cons ci ratio: 4.109235e-01	ci left: 1.583605e-05	ci right 2.420679e-05	k: 90	n:4570000
KS ci ratio: 2.117046e-03	ci left: 4.281930e-01	ci right 4.291007e-01	k: 1958916	n:4570000
CFHR3   4570000 perm   8895 sec   (514 perm/sec)   p_kst 4.286468e-01   p_cons 1.969365e-05   p_joint 1.501094e-04

Joint ci ratio: 1.495461e-01	ci left: 1.387822e-04	ci right 1.614210e-04	k: 686	n:4580000
Cons ci ratio: 4.109235e-01	ci left: 1.580148e-05	ci right 2.415394e-05	k: 90	n:4580000
KS ci ratio: 2.114703e-03	ci left: 4.282006e-01	ci right 4.291073e-01	k: 1963235	n:4580000
CFHR3   4580000 perm   8932 sec   (513 perm/sec)   p_kst 4.286539e-01   p_cons 1.965066e-05   p_joint 1.497817e-04

Joint ci ratio: 1.492206e-01	ci left: 1.391090e-04	ci right 1.617473e-04	k: 689	n:4590000
Cons ci ratio: 4.109235e-01	ci left: 1.576705e-05	ci right 2.410131e-05	k: 90	n:4590000
KS ci ratio: 2.112446e-03	ci left: 4.281901e-01	ci right 4.290958e-01	k: 1967471	n:4590000
CFHR3   4590000 perm   8970 sec   (512 perm/sec)   p_kst 4.286429e-01   p_cons 1.960784e-05   p_joint 1.501089e-04

Joint ci ratio: 1.490048e-01	ci left: 1.392252e-04	ci right 1.618467e-04	k: 691	n:4600000
Cons ci ratio: 4.109235e-01	ci left: 1.573277e-05	ci right 2.404892e-05	k: 90	n:4600000
KS ci ratio: 2.110209e-03	ci left: 4.281766e-01	ci right 4.290813e-01	k: 1971693	n:4600000
CFHR3   4600000 perm   9007 sec   (511 perm/sec)   p_kst 4.286289e-01   p_cons 1.956522e-05   p_joint 1.502174e-04

Joint ci ratio: 1.488973e-01	ci left: 1.391320e-04	ci right 1.617206e-04	k: 692	n:4610000
Cons ci ratio: 4.109236e-01	ci left: 1.569865e-05	ci right 2.399675e-05	k: 90	n:4610000
KS ci ratio: 2.107954e-03	ci left: 4.281688e-01	ci right 4.290725e-01	k: 1975941	n:4610000
CFHR3   4610000 perm   9044 sec   (510 perm/sec)   p_kst 4.286206e-01   p_cons 1.952278e-05   p_joint 1.501085e-04

Joint ci ratio: 1.487900e-01	ci left: 1.390392e-04	ci right 1.615951e-04	k: 693	n:4620000
Cons ci ratio: 4.086841e-01	ci left: 1.585880e-05	ci right 2.418346e-05	k: 91	n:4620000
KS ci ratio: 2.105619e-03	ci left: 4.281816e-01	ci right 4.290843e-01	k: 1980284	n:4620000
CFHR3   4620000 perm   9081 sec   (509 perm/sec)   p_kst 4.286329e-01   p_cons 1.969697e-05   p_joint 1.500000e-04

Joint ci ratio: 1.486829e-01	ci left: 1.389469e-04	ci right 1.614701e-04	k: 694	n:4630000
Cons ci ratio: 4.086841e-01	ci left: 1.582455e-05	ci right 2.413123e-05	k: 91	n:4630000
KS ci ratio: 2.103306e-03	ci left: 4.281908e-01	ci right 4.290926e-01	k: 1984611	n:4630000
CFHR3   4630000 perm   9119 sec   (508 perm/sec)   p_kst 4.286417e-01   p_cons 1.965443e-05   p_joint 1.498920e-04

Joint ci ratio: 1.484694e-01	ci left: 1.390624e-04	ci right 1.615691e-04	k: 696	n:4640000
Cons ci ratio: 4.086842e-01	ci left: 1.579044e-05	ci right 2.407922e-05	k: 91	n:4640000
KS ci ratio: 2.101119e-03	ci left: 4.281725e-01	ci right 4.290733e-01	k: 1988810	n:4640000
CFHR3   4640000 perm   9157 sec   (507 perm/sec)   p_kst 4.286228e-01   p_cons 1.961207e-05   p_joint 1.500000e-04

Joint ci ratio: 1.482569e-01	ci left: 1.391775e-04	ci right 1.616677e-04	k: 698	n:4650000
Cons ci ratio: 4.086842e-01	ci left: 1.575649e-05	ci right 2.402744e-05	k: 91	n:4650000
KS ci ratio: 2.098821e-03	ci left: 4.281817e-01	ci right 4.290816e-01	k: 1993137	n:4650000
CFHR3   4650000 perm   9193 sec   (506 perm/sec)   p_kst 4.286316e-01   p_cons 1.956989e-05   p_joint 1.501075e-04

Joint ci ratio: 1.480452e-01	ci left: 1.392921e-04	ci right 1.617659e-04	k: 700	n:4660000
Cons ci ratio: 4.086842e-01	ci left: 1.572267e-05	ci right 2.397588e-05	k: 91	n:4660000
KS ci ratio: 2.096585e-03	ci left: 4.281783e-01	ci right 4.290772e-01	k: 1997405	n:4660000
CFHR3   4660000 perm   9230 sec   (505 perm/sec)   p_kst 4.286277e-01   p_cons 1.952790e-05   p_joint 1.502146e-04

Joint ci ratio: 1.480452e-01	ci left: 1.389938e-04	ci right 1.614195e-04	k: 700	n:4670000
Cons ci ratio: 4.086842e-01	ci left: 1.568901e-05	ci right 2.392454e-05	k: 91	n:4670000
KS ci ratio: 2.094351e-03	ci left: 4.281759e-01	ci right 4.290738e-01	k: 2001678	n:4670000
CFHR3   4670000 perm   9266 sec   (504 perm/sec)   p_kst 4.286248e-01   p_cons 1.948608e-05   p_joint 1.498929e-04

Joint ci ratio: 1.478345e-01	ci left: 1.391084e-04	ci right 1.615177e-04	k: 702	n:4680000
Cons ci ratio: 4.064810e-01	ci left: 1.584725e-05	ci right 2.410889e-05	k: 92	n:4680000
KS ci ratio: 2.092114e-03	ci left: 4.281759e-01	ci right 4.290729e-01	k: 2005962	n:4680000
CFHR3   4680000 perm   9304 sec   (503 perm/sec)   p_kst 4.286244e-01   p_cons 1.965812e-05   p_joint 1.500000e-04

Joint ci ratio: 1.476246e-01	ci left: 1.392225e-04	ci right 1.616155e-04	k: 704	n:4690000
Cons ci ratio: 4.064810e-01	ci left: 1.581346e-05	ci right 2.405748e-05	k: 92	n:4690000
KS ci ratio: 2.089906e-03	ci left: 4.281710e-01	ci right 4.290670e-01	k: 2010223	n:4690000
CFHR3   4690000 perm   9342 sec   (502 perm/sec)   p_kst 4.286190e-01   p_cons 1.961620e-05   p_joint 1.501066e-04

Joint ci ratio: 1.473115e-01	ci left: 1.395410e-04	ci right 1.619335e-04	k: 707	n:4700000
Cons ci ratio: 4.064810e-01	ci left: 1.577981e-05	ci right 2.400629e-05	k: 92	n:4700000
KS ci ratio: 2.087666e-03	ci left: 4.281751e-01	ci right 4.290701e-01	k: 2014526	n:4700000
CFHR3   4700000 perm   9380 sec   (501 perm/sec)   p_kst 4.286226e-01   p_cons 1.957447e-05   p_joint 1.504255e-04

Joint ci ratio: 1.472076e-01	ci left: 1.394492e-04	ci right 1.618098e-04	k: 708	n:4710000
Cons ci ratio: 4.043131e-01	ci left: 1.593697e-05	ci right 2.418918e-05	k: 93	n:4710000
KS ci ratio: 2.085407e-03	ci left: 4.281853e-01	ci right 4.290794e-01	k: 2018858	n:4710000
CFHR3   4710000 perm   9417 sec   (500 perm/sec)   p_kst 4.286323e-01   p_cons 1.974522e-05   p_joint 1.503185e-04

Joint ci ratio: 1.468971e-01	ci left: 1.397660e-04	ci right 1.621260e-04	k: 711	n:4720000
Cons ci ratio: 4.043131e-01	ci left: 1.590321e-05	ci right 2.413793e-05	k: 93	n:4720000
KS ci ratio: 2.083178e-03	ci left: 4.281901e-01	ci right 4.290833e-01	k: 2023165	n:4720000
CFHR3   4720000 perm   9456 sec   (499 perm/sec)   p_kst 4.286367e-01   p_cons 1.970339e-05   p_joint 1.506356e-04

Joint ci ratio: 1.468971e-01	ci left: 1.394705e-04	ci right 1.617832e-04	k: 711	n:4730000
Cons ci ratio: 4.043131e-01	ci left: 1.586959e-05	ci right 2.408690e-05	k: 93	n:4730000
KS ci ratio: 2.080966e-03	ci left: 4.281926e-01	ci right 4.290848e-01	k: 2027461	n:4730000
CFHR3   4730000 perm   9495 sec   (498 perm/sec)   p_kst 4.286387e-01   p_cons 1.966173e-05   p_joint 1.503171e-04

Joint ci ratio: 1.467941e-01	ci left: 1.393795e-04	ci right 1.616606e-04	k: 712	n:4740000
Cons ci ratio: 4.043131e-01	ci left: 1.583610e-05	ci right 2.403608e-05	k: 93	n:4740000
KS ci ratio: 2.078838e-03	ci left: 4.281772e-01	ci right 4.290684e-01	k: 2031672	n:4740000
CFHR3   4740000 perm   9533 sec   (497 perm/sec)   p_kst 4.286228e-01   p_cons 1.962025e-05   p_joint 1.502110e-04

Joint ci ratio: 1.475202e-01	ci left: 1.376666e-04	ci right 1.597924e-04	k: 705	n:4750000
Cons ci ratio: 4.043131e-01	ci left: 1.580277e-05	ci right 2.398548e-05	k: 93	n:4750000
KS ci ratio: 2.076689e-03	ci left: 4.281680e-01	ci right 4.290582e-01	k: 2035912	n:4750000
CFHR3   4750000 perm   9572 sec   (496 perm/sec)   p_kst 4.286131e-01   p_cons 1.957895e-05   p_joint 1.484211e-04

Joint ci ratio: 1.473116e-01	ci left: 1.377821e-04	ci right 1.598923e-04	k: 707	n:4760000
Cons ci ratio: 4.043131e-01	ci left: 1.576957e-05	ci right 2.393509e-05	k: 93	n:4760000
KS ci ratio: 2.074435e-03	ci left: 4.281854e-01	ci right 4.290748e-01	k: 2040279	n:4760000
CFHR3   4760000 perm   9610 sec   (495 perm/sec)   p_kst 4.286300e-01   p_cons 1.953782e-05   p_joint 1.485294e-04

Joint ci ratio: 1.472077e-01	ci left: 1.376951e-04	ci right 1.597745e-04	k: 708	n:4770000
Cons ci ratio: 4.043131e-01	ci left: 1.573651e-05	ci right 2.388491e-05	k: 93	n:4770000
KS ci ratio: 2.072221e-03	ci left: 4.281950e-01	ci right 4.290835e-01	k: 2044609	n:4770000
CFHR3   4770000 perm   9648 sec   (494 perm/sec)   p_kst 4.286392e-01   p_cons 1.949686e-05   p_joint 1.484277e-04

Joint ci ratio: 1.470005e-01	ci left: 1.378101e-04	ci right 1.598740e-04	k: 710	n:4780000
Cons ci ratio: 4.043131e-01	ci left: 1.570358e-05	ci right 2.383494e-05	k: 93	n:4780000
KS ci ratio: 2.070088e-03	ci left: 4.281870e-01	ci right 4.290745e-01	k: 2048855	n:4780000
CFHR3   4780000 perm   9687 sec   (493 perm/sec)   p_kst 4.286308e-01   p_cons 1.945607e-05   p_joint 1.485356e-04

Joint ci ratio: 1.468973e-01	ci left: 1.377235e-04	ci right 1.597567e-04	k: 711	n:4790000
Cons ci ratio: 4.043131e-01	ci left: 1.567080e-05	ci right 2.378518e-05	k: 93	n:4790000
KS ci ratio: 2.067929e-03	ci left: 4.281866e-01	ci right 4.290732e-01	k: 2053137	n:4790000
CFHR3   4790000 perm   9727 sec   (492 perm/sec)   p_kst 4.286299e-01   p_cons 1.941545e-05   p_joint 1.484342e-04

Joint ci ratio: 1.465888e-01	ci left: 1.380386e-04	ci right 1.600718e-04	k: 714	n:4800000
Cons ci ratio: 4.043131e-01	ci left: 1.563815e-05	ci right 2.373563e-05	k: 93	n:4800000
KS ci ratio: 2.065781e-03	ci left: 4.281853e-01	ci right 4.290710e-01	k: 2057415	n:4800000
CFHR3   4800000 perm   9767 sec   (491 perm/sec)   p_kst 4.286281e-01   p_cons 1.937500e-05   p_joint 1.487500e-04

Joint ci ratio: 1.463842e-01	ci left: 1.381522e-04	ci right 1.601701e-04	k: 716	n:4810000
Cons ci ratio: 4.043131e-01	ci left: 1.560564e-05	ci right 2.368629e-05	k: 93	n:4810000
KS ci ratio: 2.063596e-03	ci left: 4.281945e-01	ci right 4.290792e-01	k: 2061743	n:4810000
CFHR3   4810000 perm   9805 sec   (491 perm/sec)   p_kst 4.286368e-01   p_cons 1.933472e-05   p_joint 1.488565e-04

Joint ci ratio: 1.461804e-01	ci left: 1.382653e-04	ci right 1.602679e-04	k: 718	n:4820000
Cons ci ratio: 4.043131e-01	ci left: 1.557326e-05	ci right 2.363714e-05	k: 93	n:4820000
KS ci ratio: 2.061467e-03	ci left: 4.281920e-01	ci right 4.290758e-01	k: 2066015	n:4820000
CFHR3   4820000 perm   9844 sec   (490 perm/sec)   p_kst 4.286338e-01   p_cons 1.929461e-05   p_joint 1.489627e-04

Joint ci ratio: 1.460789e-01	ci left: 1.381785e-04	ci right 1.601506e-04	k: 719	n:4830000
Cons ci ratio: 4.043132e-01	ci left: 1.554102e-05	ci right 2.358821e-05	k: 93	n:4830000
KS ci ratio: 2.059332e-03	ci left: 4.281926e-01	ci right 4.290754e-01	k: 2070302	n:4830000
CFHR3   4830000 perm   9883 sec   (489 perm/sec)   p_kst 4.286340e-01   p_cons 1.925466e-05   p_joint 1.488613e-04

Joint ci ratio: 1.459775e-01	ci left: 1.380921e-04	ci right 1.600339e-04	k: 720	n:4840000
Cons ci ratio: 4.043132e-01	ci left: 1.550891e-05	ci right 2.353947e-05	k: 93	n:4840000
KS ci ratio: 2.057208e-03	ci left: 4.281919e-01	ci right 4.290739e-01	k: 2074583	n:4840000
CFHR3   4840000 perm   9922 sec   (488 perm/sec)   p_kst 4.286329e-01   p_cons 1.921488e-05   p_joint 1.487603e-04

Joint ci ratio: 1.459776e-01	ci left: 1.378073e-04	ci right 1.597040e-04	k: 720	n:4850000
Cons ci ratio: 4.043132e-01	ci left: 1.547693e-05	ci right 2.349094e-05	k: 93	n:4850000
KS ci ratio: 2.055034e-03	ci left: 4.282047e-01	ci right 4.290857e-01	k: 2078929	n:4850000
CFHR3   4850000 perm   9962 sec   (487 perm/sec)   p_kst 4.286452e-01   p_cons 1.917526e-05   p_joint 1.484536e-04

Joint ci ratio: 1.459776e-01	ci left: 1.375238e-04	ci right 1.593753e-04	k: 720	n:4860000
Cons ci ratio: 4.043132e-01	ci left: 1.544509e-05	ci right 2.344260e-05	k: 93	n:4860000
KS ci ratio: 2.052943e-03	ci left: 4.281993e-01	ci right 4.290794e-01	k: 2083187	n:4860000
CFHR3   4860000 perm   10001 sec   (486 perm/sec)   p_kst 4.286393e-01   p_cons 1.913580e-05   p_joint 1.481481e-04

Joint ci ratio: 1.494380e-01	ci left: 1.307156e-04	ci right 1.520217e-04	k: 687	n:4870000
Cons ci ratio: 4.043132e-01	ci left: 1.541337e-05	ci right 2.339446e-05	k: 93	n:4870000
KS ci ratio: 2.050869e-03	ci left: 4.281914e-01	ci right 4.290707e-01	k: 2087433	n:4870000
CFHR3   4870000 perm   10040 sec   (485 perm/sec)   p_kst 4.286310e-01   p_cons 1.909651e-05   p_joint 1.410678e-04

Joint ci ratio: 1.493295e-01	ci left: 1.306450e-04	ci right 1.519228e-04	k: 688	n:4880000
Cons ci ratio: 4.043132e-01	ci left: 1.538179e-05	ci right 2.334652e-05	k: 93	n:4880000
KS ci ratio: 2.048771e-03	ci left: 4.281908e-01	ci right 4.290691e-01	k: 2091714	n:4880000
CFHR3   4880000 perm   10080 sec   (484 perm/sec)   p_kst 4.286299e-01   p_cons 1.905738e-05   p_joint 1.409836e-04

Joint ci ratio: 1.493296e-01	ci left: 1.303778e-04	ci right 1.516121e-04	k: 688	n:4890000
Cons ci ratio: 4.043132e-01	ci left: 1.535033e-05	ci right 2.329878e-05	k: 93	n:4890000
KS ci ratio: 2.046630e-03	ci left: 4.282020e-01	ci right 4.290795e-01	k: 2096053	n:4890000
CFHR3   4890000 perm   10120 sec   (483 perm/sec)   p_kst 4.286407e-01   p_cons 1.901840e-05   p_joint 1.406953e-04

Joint ci ratio: 1.492213e-01	ci left: 1.303082e-04	ci right 1.515144e-04	k: 689	n:4900000
Cons ci ratio: 4.043132e-01	ci left: 1.531901e-05	ci right 2.325123e-05	k: 93	n:4900000
KS ci ratio: 2.044456e-03	ci left: 4.282228e-01	ci right 4.290993e-01	k: 2100439	n:4900000
CFHR3   4900000 perm   10159 sec   (482 perm/sec)   p_kst 4.286610e-01   p_cons 1.897959e-05   p_joint 1.406122e-04

Joint ci ratio: 1.490055e-01	ci left: 1.304349e-04	ci right 1.516283e-04	k: 691	n:4910000
Cons ci ratio: 4.043132e-01	ci left: 1.528781e-05	ci right 2.320388e-05	k: 93	n:4910000
KS ci ratio: 2.042448e-03	ci left: 4.282052e-01	ci right 4.290809e-01	k: 2104637	n:4910000
CFHR3   4910000 perm   10199 sec   (481 perm/sec)   p_kst 4.286430e-01   p_cons 1.894094e-05   p_joint 1.407332e-04

Joint ci ratio: 1.487907e-01	ci left: 1.305612e-04	ci right 1.517418e-04	k: 693	n:4920000
Cons ci ratio: 4.043132e-01	ci left: 1.525673e-05	ci right 2.315672e-05	k: 93	n:4920000
KS ci ratio: 2.040321e-03	ci left: 4.282177e-01	ci right 4.290925e-01	k: 2108983	n:4920000
CFHR3   4920000 perm   10239 sec   (481 perm/sec)   p_kst 4.286551e-01   p_cons 1.890244e-05   p_joint 1.408537e-04

Joint ci ratio: 1.486836e-01	ci left: 1.304916e-04	ci right 1.516444e-04	k: 694	n:4930000
Cons ci ratio: 4.043132e-01	ci left: 1.522579e-05	ci right 2.310974e-05	k: 93	n:4930000
KS ci ratio: 2.038313e-03	ci left: 4.282033e-01	ci right 4.290771e-01	k: 2113196	n:4930000
CFHR3   4930000 perm   10279 sec   (480 perm/sec)   p_kst 4.286402e-01   p_cons 1.886410e-05   p_joint 1.407708e-04

Joint ci ratio: 1.483637e-01	ci left: 1.308122e-04	ci right 1.519672e-04	k: 697	n:4940000
Cons ci ratio: 4.043132e-01	ci left: 1.519497e-05	ci right 2.306296e-05	k: 93	n:4940000
KS ci ratio: 2.036263e-03	ci left: 4.282004e-01	ci right 4.290734e-01	k: 2117466	n:4940000
CFHR3   4940000 perm   10319 sec   (479 perm/sec)   p_kst 4.286368e-01   p_cons 1.882591e-05   p_joint 1.410931e-04

Joint ci ratio: 1.483637e-01	ci left: 1.305479e-04	ci right 1.516602e-04	k: 697	n:4950000
Cons ci ratio: 4.043132e-01	ci left: 1.516427e-05	ci right 2.301637e-05	k: 93	n:4950000
KS ci ratio: 2.034079e-03	ci left: 4.282310e-01	ci right 4.291032e-01	k: 2121902	n:4950000
CFHR3   4950000 perm   10359 sec   (478 perm/sec)   p_kst 4.286671e-01   p_cons 1.878788e-05   p_joint 1.408081e-04

Joint ci ratio: 1.483637e-01	ci left: 1.302847e-04	ci right 1.513545e-04	k: 697	n:4960000
Cons ci ratio: 4.043133e-01	ci left: 1.513370e-05	ci right 2.296997e-05	k: 93	n:4960000
KS ci ratio: 2.032005e-03	ci left: 4.282370e-01	ci right 4.291082e-01	k: 2126216	n:4960000
CFHR3   4960000 perm   10399 sec   (477 perm/sec)   p_kst 4.286726e-01   p_cons 1.875000e-05   p_joint 1.405242e-04

Joint ci ratio: 1.482576e-01	ci left: 1.302163e-04	ci right 1.512586e-04	k: 698	n:4970000
Cons ci ratio: 4.043133e-01	ci left: 1.510325e-05	ci right 2.292375e-05	k: 93	n:4970000
KS ci ratio: 2.030008e-03	ci left: 4.282258e-01	ci right 4.290962e-01	k: 2130445	n:4970000
CFHR3   4970000 perm   10439 sec   (476 perm/sec)   p_kst 4.286610e-01   p_cons 1.871227e-05   p_joint 1.404427e-04

Joint ci ratio: 1.479404e-01	ci left: 1.305349e-04	ci right 1.515796e-04	k: 701	n:4980000
Cons ci ratio: 4.043133e-01	ci left: 1.507292e-05	ci right 2.287772e-05	k: 93	n:4980000
KS ci ratio: 2.027952e-03	ci left: 4.282304e-01	ci right 4.290999e-01	k: 2134752	n:4980000
CFHR3   4980000 perm   10479 sec   (475 perm/sec)   p_kst 4.286651e-01   p_cons 1.867470e-05   p_joint 1.407631e-04

Joint ci ratio: 1.478352e-01	ci left: 1.304663e-04	ci right 1.514836e-04	k: 702	n:4990000
Cons ci ratio: 4.043133e-01	ci left: 1.504271e-05	ci right 2.283187e-05	k: 93	n:4990000
KS ci ratio: 2.025895e-03	ci left: 4.282365e-01	ci right 4.291051e-01	k: 2139067	n:4990000
CFHR3   4990000 perm   10520 sec   (474 perm/sec)   p_kst 4.286707e-01   p_cons 1.863727e-05   p_joint 1.406814e-04

Joint ci ratio: 1.476253e-01	ci left: 1.305906e-04	ci right 1.515954e-04	k: 704	n:5000000
Cons ci ratio: 4.021797e-01	ci left: 1.519234e-05	ci right 2.300639e-05	k: 94	n:5000000
KS ci ratio: 2.023895e-03	ci left: 4.282304e-01	ci right 4.290981e-01	k: 2143321	n:5000000
CFHR3   5000000 perm   10561 sec   (473 perm/sec)   p_kst 4.286642e-01   p_cons 1.880000e-05   p_joint 1.408000e-04

Outputting figure to mutsig2_images.part000000000036/CFHR3.4_1017_5000000_0.42866_1.88e-05_0.0001408.png
                gene_name: CFHR3
               theta_stop: 0.40 
                    nperm: 5000000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 1.88e-05 
      ci_cons_bounds_left: 1.52e-05 
     ci_cons_bounds_right: 2.30e-05 
                  p_joint: 0.00014 
     ci_joint_bounds_left: 0.00013 
    ci_joint_bounds_right: 0.00015 

Current progress: 63 percent done.
CECR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
Cons ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
KS ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
CECR1   10000 perm   2 sec   (6604 perm/sec)   p_kst 9.248000e-01   p_cons 3.294000e-01   p_joint 5.876000e-01

Outputting figure to mutsig2_images.part000000000036/CECR1.3_1606_10000_0.9248_0.3294_0.5876.png
                gene_name: CECR1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 65 percent done.
CELF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
Cons ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
KS ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
CELF2   10000 perm   2 sec   (6063 perm/sec)   p_kst 2.566000e-01   p_cons 4.502000e-01   p_joint 3.898000e-01

Outputting figure to mutsig2_images.part000000000036/CELF2.3_1687_10000_0.2566_0.4502_0.3898.png
                gene_name: CELF2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 66 percent done.
CELF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
Cons ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
KS ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
CELF5   10000 perm   2 sec   (6265 perm/sec)   p_kst 1.152000e-01   p_cons 2.693000e-01   p_joint 2.835000e-01

Joint ci ratio: 5.327993e-02	ci left: 2.072932e-01	ci right 2.186903e-01	k: 4259	n:20000
Cons ci ratio: 4.570473e-02	ci left: 2.627144e-01	ci right 2.750529e-01	k: 5377	n:20000
KS ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
CELF5   20000 perm   4 sec   (5508 perm/sec)   p_kst 1.195000e-01   p_cons 2.688500e-01   p_joint 2.129500e-01

Outputting figure to mutsig2_images.part000000000036/CELF5.3_1506_20000_0.1195_0.26885_0.21295.png
                gene_name: CELF5
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
CEP68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
KS ci ratio: 1.438252e-02	ci left: 8.749018e-01	ci right 8.876752e-01	k: 8814	n:10000
CEP68   10000 perm   2 sec   (5715 perm/sec)   p_kst 8.814000e-01   p_cons 6.446000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP68.3_2294_10000_0.8814_0.6446_1.png
                gene_name: CEP68
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CERCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
Cons ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
KS ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
CERCAM   10000 perm   2 sec   (6059 perm/sec)   p_kst 1.688000e-01   p_cons 1.625000e-01   p_joint 1.635000e-01

Outputting figure to mutsig2_images.part000000000036/CERCAM.3_1836_10000_0.1688_0.1625_0.1635.png
                gene_name: CERCAM
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
CERK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
Cons ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
KS ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
CERK   10000 perm   2 sec   (6031 perm/sec)   p_kst 6.876000e-01   p_cons 1.515000e-01   p_joint 4.819000e-01

Outputting figure to mutsig2_images.part000000000036/CERK.3_1666_10000_0.6876_0.1515_0.4819.png
                gene_name: CERK
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 73 percent done.
CES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
Cons ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
KS ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
CES1   10000 perm   2 sec   (5892 perm/sec)   p_kst 1.450000e-01   p_cons 9.423000e-01   p_joint 3.057000e-01

Outputting figure to mutsig2_images.part000000000036/CES1.3_1763_10000_0.145_0.9423_0.3057.png
                gene_name: CES1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 74 percent done.
CES3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
KS ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
CES3   10000 perm   2 sec   (6078 perm/sec)   p_kst 6.648000e-01   p_cons 4.477000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000036/CES3.3_1768_10000_0.6648_0.4477_0.708.png
                gene_name: CES3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 76 percent done.
CETN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
Cons ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
KS ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
CETN1   10000 perm   1 sec   (6777 perm/sec)   p_kst 3.785000e-01   p_cons 6.370000e-02   p_joint 2.974000e-01

Joint ci ratio: 3.548885e-02	ci left: 3.721200e-01	ci right 3.856152e-01	k: 7577	n:20000
Cons ci ratio: 1.066702e-01	ci left: 5.986647e-02	ci right 6.666118e-02	k: 1264	n:20000
KS ci ratio: 3.548885e-02	ci left: 3.721200e-01	ci right 3.856152e-01	k: 7577	n:20000
CETN1   20000 perm   3 sec   (5989 perm/sec)   p_kst 3.788500e-01   p_cons 6.320000e-02   p_joint 3.788500e-01

Joint ci ratio: 2.911445e-02	ci left: 3.711458e-01	ci right 3.821447e-01	k: 11299	n:30000
Cons ci ratio: 8.777750e-02	ci left: 5.959078e-02	ci right 6.509435e-02	k: 1869	n:30000
KS ci ratio: 2.911445e-02	ci left: 3.711458e-01	ci right 3.821447e-01	k: 11299	n:30000
CETN1   30000 perm   5 sec   (5633 perm/sec)   p_kst 3.766333e-01   p_cons 6.230000e-02   p_joint 3.766333e-01

Outputting figure to mutsig2_images.part000000000036/CETN1.3_523_30000_0.37663_0.0623_0.37663.png
                gene_name: CETN1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 77 percent done.
CFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
CFP   10000 perm   2 sec   (6662 perm/sec)   p_kst 8.661000e-01   p_cons 6.004000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CFP.3_1446_10000_0.8661_0.6004_1.png
                gene_name: CFP
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CELA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
KS ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
CELA1   10000 perm   1 sec   (6826 perm/sec)   p_kst 9.089000e-01   p_cons 6.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CELA1.2_809_10000_0.9089_0.6893_1.png
                gene_name: CELA1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CELF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
Cons ci ratio: 1.849773e-02	ci left: 8.101938e-01	ci right 8.254206e-01	k: 8179	n:10000
KS ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
CELF3   10000 perm   2 sec   (6466 perm/sec)   p_kst 1.567000e-01   p_cons 8.179000e-01   p_joint 7.518000e-01

Outputting figure to mutsig2_images.part000000000036/CELF3.2_1454_10000_0.1567_0.8179_0.7518.png
                gene_name: CELF3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 82 percent done.
CENPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
Cons ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
CENPA   10000 perm   1 sec   (7053 perm/sec)   p_kst 6.170000e-02   p_cons 5.562000e-01   p_joint 1.280000e-01

Joint ci ratio: 4.825408e-02	ci left: 2.420765e-01	ci right 2.540968e-01	k: 4961	n:20000
Cons ci ratio: 2.469322e-02	ci left: 5.505835e-01	ci right 5.643998e-01	k: 11150	n:20000
KS ci ratio: 1.088927e-01	ci left: 5.752723e-02	ci right 6.420115e-02	k: 1216	n:20000
CENPA   20000 perm   3 sec   (6179 perm/sec)   p_kst 6.080000e-02   p_cons 5.575000e-01   p_joint 2.480500e-01

Joint ci ratio: 4.596889e-02	ci left: 1.905958e-01	ci right 1.995967e-01	k: 5852	n:30000
Cons ci ratio: 2.012697e-02	ci left: 5.527253e-01	ci right 5.639967e-01	k: 16751	n:30000
KS ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
CENPA   30000 perm   5 sec   (5856 perm/sec)   p_kst 6.096667e-02   p_cons 5.583667e-01   p_joint 1.950667e-01

Outputting figure to mutsig2_images.part000000000036/CENPA.2_439_30000_0.060967_0.55837_0.19507.png
                gene_name: CENPA
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 84 percent done.
CENPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
KS ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
CENPH   10000 perm   1 sec   (6859 perm/sec)   p_kst 1.100000e-01   p_cons 9.340000e-02   p_joint 1.084000e-01

Joint ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
Cons ci ratio: 8.668999e-02	ci left: 8.871513e-02	ci right 9.680371e-02	k: 1854	n:20000
KS ci ratio: 7.912587e-02	ci left: 1.049587e-01	ci right 1.136553e-01	k: 2185	n:20000
CENPH   20000 perm   3 sec   (6040 perm/sec)   p_kst 1.092500e-01   p_cons 9.270000e-02   p_joint 6.535000e-02

Joint ci ratio: 1.001703e-01	ci left: 4.612881e-02	ci right 5.102575e-02	k: 1456	n:30000
Cons ci ratio: 7.017952e-02	ci left: 9.088450e-02	ci right 9.752766e-02	k: 2825	n:30000
KS ci ratio: 6.401613e-02	ci left: 1.075322e-01	ci right 1.146767e-01	k: 3332	n:30000
CENPH   30000 perm   5 sec   (5693 perm/sec)   p_kst 1.110667e-01   p_cons 9.416667e-02   p_joint 4.853333e-02

Joint ci ratio: 8.413514e-02	ci left: 4.930521e-02	ci right 5.366020e-02	k: 2058	n:40000
Cons ci ratio: 6.050307e-02	ci left: 9.209420e-02	ci right 9.786475e-02	k: 3798	n:40000
KS ci ratio: 5.555939e-02	ci left: 1.075917e-01	ci right 1.137650e-01	k: 4426	n:40000
CENPH   40000 perm   7 sec   (5500 perm/sec)   p_kst 1.106500e-01   p_cons 9.495000e-02   p_joint 5.145000e-02

Outputting figure to mutsig2_images.part000000000036/CENPH.2_780_40000_0.11065_0.09495_0.05145.png
                gene_name: CENPH
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 85 percent done.
CENPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
KS ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
CENPK   10000 perm   1 sec   (6748 perm/sec)   p_kst 1.584000e-01   p_cons 7.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CENPK.2_846_10000_0.1584_0.7993_1.png
                gene_name: CENPK
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CENPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
Cons ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
KS ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
CENPL   10000 perm   2 sec   (6537 perm/sec)   p_kst 2.349000e-01   p_cons 7.231000e-01   p_joint 4.495000e-01

Outputting figure to mutsig2_images.part000000000036/CENPL.2_1193_10000_0.2349_0.7231_0.4495.png
                gene_name: CENPL
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 89 percent done.
CENPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
Cons ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
KS ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
CENPP   10000 perm   1 sec   (6753 perm/sec)   p_kst 3.327000e-01   p_cons 2.020000e-02   p_joint 6.550000e-02

Joint ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
Cons ci ratio: 1.986352e-01	ci left: 1.720062e-02	ci right 2.104099e-02	k: 381	n:20000
KS ci ratio: 3.952712e-02	ci left: 3.230855e-01	ci right 3.361641e-01	k: 6592	n:20000
CENPP   20000 perm   3 sec   (5954 perm/sec)   p_kst 3.296000e-01   p_cons 1.905000e-02   p_joint 1.118000e-01

Joint ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
Cons ci ratio: 1.654543e-01	ci left: 1.684538e-02	ci right 1.991557e-02	k: 550	n:30000
KS ci ratio: 3.239953e-02	ci left: 3.225880e-01	ci right 3.332453e-01	k: 9837	n:30000
CENPP   30000 perm   5 sec   (5651 perm/sec)   p_kst 3.279000e-01   p_cons 1.833333e-02   p_joint 6.626667e-02

Joint ci ratio: 8.110652e-02	ci left: 5.293282e-02	ci right 5.743203e-02	k: 2206	n:40000
Cons ci ratio: 1.425650e-01	ci left: 1.722613e-02	ci right 1.989441e-02	k: 741	n:40000
KS ci ratio: 2.800691e-02	ci left: 3.241216e-01	ci right 3.333533e-01	k: 13149	n:40000
CENPP   40000 perm   7 sec   (5442 perm/sec)   p_kst 3.287250e-01   p_cons 1.852500e-02   p_joint 5.515000e-02

Joint ci ratio: 7.568406e-02	ci left: 4.898958e-02	ci right 5.286277e-02	k: 2545	n:50000
Cons ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
KS ci ratio: 2.503710e-02	ci left: 3.248418e-01	ci right 3.330981e-01	k: 16448	n:50000
CENPP   50000 perm   9 sec   (5273 perm/sec)   p_kst 3.289600e-01   p_cons 1.786000e-02   p_joint 5.090000e-02

Joint ci ratio: 7.095969e-02	ci left: 4.667995e-02	ci right 5.013056e-02	k: 2903	n:60000
Cons ci ratio: 1.198516e-01	ci left: 1.646585e-02	ci right 1.858118e-02	k: 1050	n:60000
KS ci ratio: 2.284598e-02	ci left: 3.253901e-01	ci right 3.329265e-01	k: 19749	n:60000
CENPP   60000 perm   12 sec   (5141 perm/sec)   p_kst 3.291500e-01   p_cons 1.750000e-02   p_joint 4.838333e-02

Joint ci ratio: 6.388370e-02	ci left: 4.940990e-02	ci right 5.268459e-02	k: 3572	n:70000
Cons ci ratio: 1.113857e-01	ci left: 1.641647e-02	ci right 1.836668e-02	k: 1216	n:70000
KS ci ratio: 2.120933e-02	ci left: 3.244651e-01	ci right 3.314349e-01	k: 22956	n:70000
CENPP   70000 perm   14 sec   (5025 perm/sec)   p_kst 3.279429e-01   p_cons 1.737143e-02   p_joint 5.102857e-02

Joint ci ratio: 6.403252e-02	ci left: 4.331526e-02	ci right 4.619287e-02	k: 3579	n:80000
Cons ci ratio: 1.032091e-01	ci left: 1.679755e-02	ci right 1.863766e-02	k: 1416	n:80000
KS ci ratio: 1.976189e-02	ci left: 3.264174e-01	ci right 3.329449e-01	k: 26374	n:80000
CENPP   80000 perm   16 sec   (4924 perm/sec)   p_kst 3.296750e-01   p_cons 1.770000e-02   p_joint 4.473750e-02

Joint ci ratio: 5.774373e-02	ci left: 4.730280e-02	ci right 5.012638e-02	k: 4383	n:90000
Cons ci ratio: 9.809645e-02	ci left: 1.657745e-02	ci right 1.829830e-02	k: 1568	n:90000
KS ci ratio: 1.861852e-02	ci left: 3.269169e-01	ci right 3.330719e-01	k: 29699	n:90000
CENPP   90000 perm   19 sec   (4813 perm/sec)   p_kst 3.299889e-01   p_cons 1.742222e-02   p_joint 4.870000e-02

Outputting figure to mutsig2_images.part000000000036/CENPP.2_899_90000_0.32999_0.017422_0.0487.png
                gene_name: CENPP
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 90 percent done.
CENPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
Cons ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
KS ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
CENPT   10000 perm   2 sec   (6589 perm/sec)   p_kst 2.720000e-01   p_cons 3.661000e-01   p_joint 3.750000e-01

Outputting figure to mutsig2_images.part000000000036/CENPT.2_1738_10000_0.272_0.3661_0.375.png
                gene_name: CENPT
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 92 percent done.
CEP120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485289e-02	ci left: 8.678477e-01	ci right 8.809333e-01	k: 8745	n:10000
Cons ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
CEP120   10000 perm   2 sec   (5710 perm/sec)   p_kst 8.185000e-01   p_cons 9.710000e-01   p_joint 8.745000e-01

Outputting figure to mutsig2_images.part000000000036/CEP120.2_3041_10000_0.8185_0.971_0.8745.png
                gene_name: CEP120
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 94 percent done.
CEP57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.547546e-02	ci left: 8.583501e-01	ci right 8.718364e-01	k: 8652	n:10000
Cons ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
KS ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
CEP57   10000 perm   2 sec   (6406 perm/sec)   p_kst 6.634000e-01   p_cons 2.540000e-01   p_joint 8.652000e-01

Outputting figure to mutsig2_images.part000000000036/CEP57.2_1547_10000_0.6634_0.254_0.8652.png
                gene_name: CEP57
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 95 percent done.
CER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
Cons ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KS ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
CER1   10000 perm   1 sec   (6800 perm/sec)   p_kst 2.507000e-01   p_cons 8.730000e-02   p_joint 1.610000e-01

Joint ci ratio: 4.264507e-02	ci left: 2.906225e-01	ci right 3.033366e-01	k: 5939	n:20000
Cons ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
KS ci ratio: 4.738412e-02	ci left: 2.488711e-01	ci right 2.610002e-01	k: 5098	n:20000
CER1   20000 perm   3 sec   (6006 perm/sec)   p_kst 2.549000e-01   p_cons 8.535000e-02   p_joint 2.969500e-01

Outputting figure to mutsig2_images.part000000000036/CER1.2_812_20000_0.2549_0.08535_0.29695.png
                gene_name: CER1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 97 percent done.
CETP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
Cons ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
KS ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
CETP   10000 perm   2 sec   (6513 perm/sec)   p_kst 2.239000e-01   p_cons 5.804000e-01   p_joint 6.693000e-01

Outputting figure to mutsig2_images.part000000000036/CETP.2_1546_10000_0.2239_0.5804_0.6693.png
                gene_name: CETP
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 98 percent done.
CFL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
Cons ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
KS ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
CFL2   10000 perm   1 sec   (6782 perm/sec)   p_kst 3.134000e-01   p_cons 5.824000e-01   p_joint 5.135000e-01

Outputting figure to mutsig2_images.part000000000036/CFL2.2_524_10000_0.3134_0.5824_0.5135.png
                gene_name: CFL2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000036
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 36 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4421820: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000037> was used as the working directory.
Started at Wed Oct 24 17:35:50 2012
Results reported at Wed Oct 24 17:50:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000037.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000037.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 37  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000037.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    556.79 sec.
    Max Memory :      5325 MB
    Max Swap   :      7614 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
37
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 37
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 37: processing genes 3258 - 3347
Calculating significance of each gene.
Using projection method.
3258	CGB1	4.933054e-01
3259	CGB2	3.002164e-01
3260	CGB5	1
3261	CGB7	1
3262	CGB8	1
3263	CGGBP1	1
3264	CGN	8.074597e-01
3265	CGNL1	6.177164e-01
3266	CGREF1	6.633263e-01
3267	CGRRF1	1.662750e-01
3268	CH25H	1.999828e-01
3269	CHAC1	1
3270	CHAC2	1
3271	CHAD	7.998461e-01
3272	CHAF1A	9.351503e-01
3273	CHAF1B	9.825458e-01
3274	CHAT	3.025966e-02
3275	CHCHD1	1
3276	CHCHD10	1
3277	CHCHD2	4.012315e-01
3278	CHCHD3	4.310375e-01
3279	CHCHD4	4.490091e-01
3280	CHCHD5	1
3281	CHCHD6	6.281298e-01
3282	CHCHD7	1
3283	CHCHD8	1
3284	CHD1	9.999601e-01
3285	CHD1L	1
3286	CHD2	9.964862e-01
3287	CHD3	9.128471e-01
3288	CHD4	9.990665e-01
3289	CHD5	9.988204e-01
3290	CHD6	1
3291	CHD7	9.996062e-01
3292	CHD8	7.269721e-01
3293	CHD9	9.918575e-01
3294	CHDH	1
3295	CHEK1	3.091496e-01
3296	CHEK2	7.521196e-01
3297	CHERP	9.303552e-01
3298	CHFR	3.528337e-01
3299	CHGA	5.166607e-01
3300	CHGB	2.930719e-02
3301	CHI3L1	8.582800e-01
3302	CHI3L2	1
3303	CHIA	6.743068e-01
3304	CHIC2	1
3305	CHID1	5.276085e-01
3306	CHIT1	2.888700e-01
3307	CHKA	8.109849e-01
3308	CHKB	7.075505e-01
3309	CHL1	9.974681e-01
3310	CHM	7.309741e-03
3311	CHML	7.977949e-01
3312	CHMP1A	1
3313	CHMP1B	1
3314	CHMP2A	8.157073e-01
3315	CHMP2B	5.134242e-01
3316	CHMP4A	1
3317	CHMP4B	6.547186e-01
3318	CHMP4C	5.464543e-01
3319	CHMP5	7.551109e-01
3320	CHMP6	1
3321	CHMP7	1
3322	CHN1	2.763298e-01
3323	CHN2	4.539970e-01
3324	CHODL	5.065151e-01
3325	CHORDC1	2.221320e-01
3326	CHP	1
3327	CHP2	1
3328	CHPF	8.338879e-01
3329	CHPF2	9.848905e-01
3330	CHPT1	1
3331	CHRAC1	1
3332	CHRD	8.122108e-01
3333	CHRDL1	6.849138e-01
3334	CHRDL2	1
3335	CHRFAM7A	7.143201e-01
3336	CHRM1	6.748489e-01
3337	CHRM2	1.845139e-01
3338	CHRM3	3.563565e-01
3339	CHRM4	7.492092e-01
3340	CHRM5	1
3341	CHRNA1	2.024899e-02
3342	CHRNA10	9.236165e-01
3343	CHRNA2	5.500500e-01
3344	CHRNA3	8.416696e-01
3345	CHRNA4	2.741523e-02
3346	CHRNA5	1
3347	CHRNA6	1
Done

Running MutSig 2:
Scatter job 37: processing genes 3258 - 3347
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
Cons ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
KS ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
CHD6   10000 perm   4 sec   (2589 perm/sec)   p_kst 2.439000e-01   p_cons 4.377000e-01   p_joint 3.523000e-01

Outputting figure to mutsig2_images.part000000000037/CHD6.22_8292_10000_0.2439_0.4377_0.3523.png
                gene_name: CHD6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 2 percent done.
CHD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
CHD7   10000 perm   3 sec   (3714 perm/sec)   p_kst 7.681000e-01   p_cons 1.531000e-01   p_joint 4.354000e-01

Outputting figure to mutsig2_images.part000000000037/CHD7.19_9142_10000_0.7681_0.1531_0.4354.png
                gene_name: CHD7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 4 percent done.
CHD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
CHD9   10000 perm   3 sec   (3530 perm/sec)   p_kst 1.758000e-01   p_cons 1.176000e-01   p_joint 1.128000e-01

Joint ci ratio: 6.005810e-02	ci left: 1.703000e-01	ci right 1.808945e-01	k: 3511	n:20000
Cons ci ratio: 7.534660e-02	ci left: 1.146907e-01	ci right 1.237203e-01	k: 2383	n:20000
KS ci ratio: 5.960570e-02	ci left: 1.724738e-01	ci right 1.831201e-01	k: 3555	n:20000
CHD9   20000 perm   6 sec   (3335 perm/sec)   p_kst 1.777500e-01   p_cons 1.191500e-01   p_joint 1.755500e-01

Outputting figure to mutsig2_images.part000000000037/CHD9.17_8798_20000_0.17775_0.11915_0.17555.png
                gene_name: CHD9
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 7 percent done.
CHRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
CHRM2   10000 perm   2 sec   (4846 perm/sec)   p_kst 5.925000e-01   p_cons 3.055000e-01   p_joint 4.424000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM2.17_1405_10000_0.5925_0.3055_0.4424.png
                gene_name: CHRM2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 9 percent done.
CHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
Cons ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
KS ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
CHL1   10000 perm   2 sec   (5155 perm/sec)   p_kst 6.770000e-02   p_cons 2.220000e-01   p_joint 5.950000e-02

Joint ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
Cons ci ratio: 5.211589e-02	ci left: 2.147207e-01	ci right 2.262607e-01	k: 4409	n:20000
KS ci ratio: 1.002630e-01	ci left: 6.742937e-02	ci right 7.459595e-02	k: 1419	n:20000
CHL1   20000 perm   4 sec   (4662 perm/sec)   p_kst 7.095000e-02   p_cons 2.204500e-01   p_joint 6.870000e-02

Joint ci ratio: 9.560218e-02	ci left: 5.052416e-02	ci right 5.562949e-02	k: 1591	n:30000
Cons ci ratio: 4.293583e-02	ci left: 2.127433e-01	ci right 2.221114e-01	k: 6522	n:30000
KS ci ratio: 8.341394e-02	ci left: 6.569950e-02	ci right 7.145106e-02	k: 2056	n:30000
CHL1   30000 perm   7 sec   (4470 perm/sec)   p_kst 6.853333e-02   p_cons 2.174000e-01   p_joint 5.303333e-02

Outputting figure to mutsig2_images.part000000000037/CHL1.15_3779_30000_0.068533_0.2174_0.053033.png
                gene_name: CHL1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.056 

Current progress: 11 percent done.
CHD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
Cons ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
KS ci ratio: 8.296339e-02	ci left: 1.748744e-01	ci right 1.901110e-01	k: 1824	n:10000
CHD5   10000 perm   2 sec   (4445 perm/sec)   p_kst 1.824000e-01   p_cons 2.392000e-01   p_joint 1.928000e-01

Outputting figure to mutsig2_images.part000000000037/CHD5.13_6029_10000_0.1824_0.2392_0.1928.png
                gene_name: CHD5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 13 percent done.
CHD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
Cons ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
KS ci ratio: 1.160542e-01	ci left: 9.642692e-02	ci right 1.084058e-01	k: 1023	n:10000
CHD8   10000 perm   3 sec   (3627 perm/sec)   p_kst 1.023000e-01   p_cons 4.926000e-01   p_joint 1.863000e-01

Joint ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
Cons ci ratio: 2.776921e-02	ci left: 4.920961e-01	ci right 5.060042e-01	k: 9981	n:20000
KS ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
CHD8   20000 perm   6 sec   (3463 perm/sec)   p_kst 1.061500e-01   p_cons 4.990500e-01   p_joint 1.509500e-01

Outputting figure to mutsig2_images.part000000000037/CHD8.13_7904_20000_0.10615_0.49905_0.15095.png
                gene_name: CHD8
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
CHRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
Cons ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
KS ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
CHRM3   10000 perm   2 sec   (4821 perm/sec)   p_kst 4.786000e-01   p_cons 4.610000e-02   p_joint 1.712000e-01

Joint ci ratio: 6.921702e-02	ci left: 1.333957e-01	ci right 1.430098e-01	k: 2763	n:20000
Cons ci ratio: 1.302882e-01	ci left: 4.047238e-02	ci right 4.616135e-02	k: 865	n:20000
KS ci ratio: 2.771096e-02	ci left: 4.931459e-01	ci right 5.070541e-01	k: 10002	n:20000
CHRM3   20000 perm   5 sec   (4370 perm/sec)   p_kst 5.001000e-01   p_cons 4.325000e-02   p_joint 1.381500e-01

Joint ci ratio: 6.373680e-02	ci left: 1.083867e-01	ci right 1.155554e-01	k: 3358	n:30000
Cons ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
KS ci ratio: 2.259633e-02	ci left: 4.950922e-01	ci right 5.064410e-01	k: 15023	n:30000
CHRM3   30000 perm   7 sec   (4274 perm/sec)   p_kst 5.007667e-01   p_cons 4.413333e-02   p_joint 1.119333e-01

Joint ci ratio: 5.026031e-02	ci left: 1.286724e-01	ci right 1.353311e-01	k: 5279	n:40000
Cons ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
KS ci ratio: 1.957576e-02	ci left: 4.956877e-01	ci right 5.055122e-01	k: 20024	n:40000
CHRM3   40000 perm   9 sec   (4267 perm/sec)   p_kst 5.006000e-01   p_cons 4.377500e-02   p_joint 1.319750e-01

Outputting figure to mutsig2_images.part000000000037/CHRM3.13_1777_40000_0.5006_0.043775_0.13198.png
                gene_name: CHRM3
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
CHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
CHD4   10000 perm   2 sec   (4640 perm/sec)   p_kst 2.983000e-01   p_cons 2.210000e-01   p_joint 3.318000e-01

Outputting figure to mutsig2_images.part000000000037/CHD4.12_5895_10000_0.2983_0.221_0.3318.png
                gene_name: CHD4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 20 percent done.
CHRNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
KS ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
CHRNA4   10000 perm   2 sec   (6287 perm/sec)   p_kst 4.690000e-01   p_cons 1.065000e-01   p_joint 2.713000e-01

Joint ci ratio: 5.055226e-02	ci left: 2.252723e-01	ci right 2.370059e-01	k: 4622	n:20000
Cons ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
KS ci ratio: 2.966076e-02	ci left: 4.592167e-01	ci right 4.730931e-01	k: 9323	n:20000
CHRNA4   20000 perm   4 sec   (5586 perm/sec)   p_kst 4.661500e-01   p_cons 1.039000e-01   p_joint 2.311000e-01

Outputting figure to mutsig2_images.part000000000037/CHRNA4.10_1908_20000_0.46615_0.1039_0.2311.png
                gene_name: CHRNA4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
CHGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
Cons ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
KS ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
CHGB   10000 perm   2 sec   (5836 perm/sec)   p_kst 3.385000e-01   p_cons 9.571000e-01   p_joint 5.535000e-01

Outputting figure to mutsig2_images.part000000000037/CHGB.9_2054_10000_0.3385_0.9571_0.5535.png
                gene_name: CHGB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 24 percent done.
CHRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
Cons ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
KS ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
CHRD   10000 perm   2 sec   (5538 perm/sec)   p_kst 1.171000e-01   p_cons 1.111000e-01   p_joint 6.420000e-02

Joint ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
Cons ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
CHRD   20000 perm   4 sec   (5048 perm/sec)   p_kst 1.178500e-01   p_cons 1.151000e-01   p_joint 8.905000e-02

Outputting figure to mutsig2_images.part000000000037/CHRD.9_2960_20000_0.11785_0.1151_0.08905.png
                gene_name: CHRD
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 27 percent done.
CHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
CHAT   10000 perm   2 sec   (5590 perm/sec)   p_kst 4.452000e-01   p_cons 3.920000e-01   p_joint 5.114000e-01

Outputting figure to mutsig2_images.part000000000037/CHAT.8_2351_10000_0.4452_0.392_0.5114.png
                gene_name: CHAT
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 29 percent done.
CHM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
CHM   10000 perm   2 sec   (5654 perm/sec)   p_kst 1.640000e-02   p_cons 1.116000e-01   p_joint 6.300000e-02

Joint ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
CHM   20000 perm   4 sec   (5113 perm/sec)   p_kst 1.620000e-02   p_cons 1.025500e-01   p_joint 2.820000e-02

Joint ci ratio: 1.288374e-01	ci left: 2.800174e-02	ci right 3.188999e-02	k: 897	n:30000
Cons ci ratio: 6.562196e-02	ci left: 1.028009e-01	ci right 1.098088e-01	k: 3188	n:30000
KS ci ratio: 1.719246e-01	ci left: 1.556744e-02	ci right 1.852716e-02	k: 510	n:30000
CHM   30000 perm   6 sec   (4905 perm/sec)   p_kst 1.700000e-02   p_cons 1.062667e-01   p_joint 2.990000e-02

Joint ci ratio: 1.221502e-01	ci left: 2.356482e-02	ci right 2.665465e-02	k: 1003	n:40000
Cons ci ratio: 5.632046e-02	ci left: 1.049744e-01	ci right 1.110827e-01	k: 4320	n:40000
KS ci ratio: 1.475029e-01	ci left: 1.606896e-02	ci right 1.865179e-02	k: 693	n:40000
CHM   40000 perm   8 sec   (4767 perm/sec)   p_kst 1.732500e-02   p_cons 1.080000e-01   p_joint 2.507500e-02

Joint ci ratio: 1.037082e-01	ci left: 2.633748e-02	ci right 2.923770e-02	k: 1388	n:50000
Cons ci ratio: 5.061794e-02	ci left: 1.043825e-01	ci right 1.098232e-01	k: 5354	n:50000
KS ci ratio: 1.359325e-01	ci left: 1.524690e-02	ci right 1.748976e-02	k: 817	n:50000
CHM   50000 perm   11 sec   (4656 perm/sec)   p_kst 1.634000e-02   p_cons 1.070800e-01   p_joint 2.776000e-02

Joint ci ratio: 8.880916e-02	ci left: 3.005155e-02	ci right 3.286068e-02	k: 1886	n:60000
Cons ci ratio: 4.632891e-02	ci left: 1.041249e-01	ci right 1.090799e-01	k: 6395	n:60000
KS ci ratio: 1.238072e-01	ci left: 1.541501e-02	ci right 1.746548e-02	k: 985	n:60000
CHM   60000 perm   13 sec   (4561 perm/sec)   p_kst 1.641667e-02   p_cons 1.065833e-01   p_joint 3.143333e-02

Joint ci ratio: 9.172336e-02	ci left: 2.426098e-02	ci right 2.660715e-02	k: 1779	n:70000
Cons ci ratio: 4.485171e-02	ci left: 9.617475e-02	ci right 1.006015e-01	k: 6886	n:70000
KS ci ratio: 1.114789e-01	ci left: 1.638868e-02	ci right 1.833733e-02	k: 1214	n:70000
CHM   70000 perm   16 sec   (4470 perm/sec)   p_kst 1.734286e-02   p_cons 9.837143e-02   p_joint 2.541429e-02

Joint ci ratio: 8.556848e-02	ci left: 2.446758e-02	ci right 2.666701e-02	k: 2044	n:80000
Cons ci ratio: 4.189258e-02	ci left: 9.657962e-02	ci right 1.007245e-01	k: 7891	n:80000
KS ci ratio: 1.039206e-01	ci left: 1.656610e-02	ci right 1.839413e-02	k: 1397	n:80000
CHM   80000 perm   18 sec   (4377 perm/sec)   p_kst 1.746250e-02   p_cons 9.863750e-02   p_joint 2.555000e-02

Joint ci ratio: 8.569315e-02	ci left: 2.174764e-02	ci right 2.370551e-02	k: 2044	n:90000
Cons ci ratio: 3.946838e-02	ci left: 9.682489e-02	ci right 1.007343e-01	k: 8889	n:90000
KS ci ratio: 9.841612e-02	ci left: 1.646903e-02	ci right 1.818451e-02	k: 1558	n:90000
CHM   90000 perm   21 sec   (4305 perm/sec)   p_kst 1.731111e-02   p_cons 9.876667e-02   p_joint 2.271111e-02

Outputting figure to mutsig2_images.part000000000037/CHM.8_2045_90000_0.017311_0.098767_0.022711.png
                gene_name: CHM
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 31 percent done.
CGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
CGN   10000 perm   2 sec   (5725 perm/sec)   p_kst 3.121000e-01   p_cons 9.582000e-01   p_joint 6.210000e-01

Outputting figure to mutsig2_images.part000000000037/CGN.7_3692_10000_0.3121_0.9582_0.621.png
                gene_name: CGN
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 33 percent done.
CGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
KS ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
CGNL1   10000 perm   2 sec   (5315 perm/sec)   p_kst 7.880000e-01   p_cons 9.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CGNL1.7_3981_10000_0.788_0.9829_1.png
                gene_name: CGNL1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
CHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
Cons ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
KS ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
CHD3   10000 perm   2 sec   (4704 perm/sec)   p_kst 2.054000e-01   p_cons 3.590000e-01   p_joint 2.293000e-01

Outputting figure to mutsig2_images.part000000000037/CHD3.7_6444_10000_0.2054_0.359_0.2293.png
                gene_name: CHD3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 38 percent done.
CHML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
KS ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
CHML   10000 perm   2 sec   (6173 perm/sec)   p_kst 7.958000e-01   p_cons 8.670000e-02   p_joint 2.500000e-01

Joint ci ratio: 4.356132e-02	ci left: 2.818794e-01	ci right 2.944823e-01	k: 5763	n:20000
Cons ci ratio: 8.781642e-02	ci left: 8.660762e-02	ci right 9.461186e-02	k: 1811	n:20000
KS ci ratio: 1.408221e-02	ci left: 7.891859e-01	ci right 8.004283e-01	k: 15897	n:20000
CHML   20000 perm   4 sec   (5569 perm/sec)   p_kst 7.948500e-01   p_cons 9.055000e-02   p_joint 2.881500e-01

Outputting figure to mutsig2_images.part000000000037/CHML.7_1975_20000_0.79485_0.09055_0.28815.png
                gene_name: CHML
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 40 percent done.
CHRNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
KS ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
CHRNA1   10000 perm   2 sec   (6069 perm/sec)   p_kst 1.942000e-01   p_cons 1.356000e-01   p_joint 1.502000e-01

Outputting figure to mutsig2_images.part000000000037/CHRNA1.7_1489_10000_0.1942_0.1356_0.1502.png
                gene_name: CHRNA1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 42 percent done.
CHAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
CHAF1A   10000 perm   2 sec   (5750 perm/sec)   p_kst 7.966000e-01   p_cons 3.045000e-01   p_joint 5.476000e-01

Outputting figure to mutsig2_images.part000000000037/CHAF1A.6_2931_10000_0.7966_0.3045_0.5476.png
                gene_name: CHAF1A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 44 percent done.
CHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
CHD2   10000 perm   2 sec   (4442 perm/sec)   p_kst 7.620000e-02   p_cons 8.200000e-03   p_joint 9.200000e-03

Joint ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
Cons ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
KS ci ratio: 9.623711e-02	ci left: 7.290196e-02	ci right 8.032169e-02	k: 1531	n:20000
CHD2   20000 perm   5 sec   (3968 perm/sec)   p_kst 7.655000e-02   p_cons 7.800000e-03   p_joint 1.885000e-02

Joint ci ratio: 2.056447e-01	ci left: 1.073536e-02	ci right 1.322716e-02	k: 358	n:30000
Cons ci ratio: 2.483906e-01	ci left: 7.210699e-03	ci right 9.286228e-03	k: 246	n:30000
KS ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
CHD2   30000 perm   8 sec   (3801 perm/sec)   p_kst 7.570000e-02   p_cons 8.200000e-03   p_joint 1.193333e-02

Joint ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
Cons ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
KS ci ratio: 6.809877e-02	ci left: 7.388894e-02	ci right 7.912273e-02	k: 3059	n:40000
CHD2   40000 perm   11 sec   (3694 perm/sec)   p_kst 7.647500e-02   p_cons 8.500000e-03   p_joint 1.100000e-02

Joint ci ratio: 1.703446e-01	ci left: 9.586755e-03	ci right 1.139076e-02	k: 523	n:50000
Cons ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
KS ci ratio: 6.078914e-02	ci left: 7.444123e-02	ci right 7.912805e-02	k: 3838	n:50000
CHD2   50000 perm   14 sec   (3610 perm/sec)   p_kst 7.676000e-02   p_cons 8.460000e-03   p_joint 1.046000e-02

Joint ci ratio: 1.629752e-01	ci left: 8.771269e-03	ci right 1.034338e-02	k: 572	n:60000
Cons ci ratio: 1.721602e-01	ci left: 7.828814e-03	ci right 9.319305e-03	k: 513	n:60000
KS ci ratio: 5.523856e-02	ci left: 7.529039e-02	ci right 7.958392e-02	k: 4645	n:60000
CHD2   60000 perm   17 sec   (3541 perm/sec)   p_kst 7.741667e-02   p_cons 8.550000e-03   p_joint 9.533333e-03

Joint ci ratio: 1.455399e-01	ci left: 9.510181e-03	ci right 1.101654e-02	k: 717	n:70000
Cons ci ratio: 1.596134e-01	ci left: 7.860658e-03	ci right 9.237688e-03	k: 597	n:70000
KS ci ratio: 5.080817e-02	ci left: 7.637674e-02	ci right 8.037258e-02	k: 5485	n:70000
CHD2   70000 perm   20 sec   (3477 perm/sec)   p_kst 7.835714e-02   p_cons 8.528571e-03   p_joint 1.024286e-02

Joint ci ratio: 1.394913e-01	ci left: 9.092750e-03	ci right 1.046815e-02	k: 781	n:80000
Cons ci ratio: 1.505799e-01	ci left: 7.767168e-03	ci right 9.043868e-03	k: 671	n:80000
KS ci ratio: 4.740261e-02	ci left: 7.688023e-02	ci right 8.062538e-02	k: 6299	n:80000
CHD2   80000 perm   23 sec   (3417 perm/sec)   p_kst 7.873750e-02   p_cons 8.387500e-03   p_joint 9.762500e-03

Joint ci ratio: 1.387646e-01	ci left: 8.178693e-03	ci right 9.408837e-03	k: 790	n:90000
Cons ci ratio: 1.425397e-01	ci left: 7.739041e-03	ci right 8.937417e-03	k: 749	n:90000
KS ci ratio: 4.463868e-02	ci left: 7.715779e-02	ci right 8.069163e-02	k: 7102	n:90000
CHD2   90000 perm   27 sec   (3370 perm/sec)   p_kst 7.891111e-02   p_cons 8.322222e-03   p_joint 8.777778e-03

Joint ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
Cons ci ratio: 1.350890e-01	ci left: 7.785643e-03	ci right 8.923150e-03	k: 834	n:100000
KS ci ratio: 4.228468e-02	ci left: 7.746414e-02	ci right 8.082032e-02	k: 7913	n:100000
CHD2   100000 perm   30 sec   (3319 perm/sec)   p_kst 7.913000e-02   p_cons 8.340000e-03   p_joint 7.160000e-03

Joint ci ratio: 1.161158e-01	ci left: 9.658761e-03	ci right 1.085818e-02	k: 1127	n:110000
Cons ci ratio: 1.291217e-01	ci left: 7.772307e-03	ci right 8.853858e-03	k: 913	n:110000
KS ci ratio: 4.034305e-02	ci left: 7.744857e-02	ci right 8.064639e-02	k: 8694	n:110000
CHD2   110000 perm   33 sec   (3285 perm/sec)   p_kst 7.903636e-02   p_cons 8.300000e-03   p_joint 1.024545e-02

Joint ci ratio: 9.625246e-02	ci left: 1.297669e-02	ci right 1.429697e-02	k: 1635	n:120000
Cons ci ratio: 1.242603e-01	ci left: 7.713656e-03	ci right 8.743655e-03	k: 986	n:120000
KS ci ratio: 3.867305e-02	ci left: 7.733945e-02	ci right 8.039761e-02	k: 9463	n:120000
CHD2   120000 perm   37 sec   (3260 perm/sec)   p_kst 7.885833e-02   p_cons 8.216667e-03   p_joint 1.362500e-02

Joint ci ratio: 9.430950e-02	ci left: 1.249646e-02	ci right 1.374078e-02	k: 1704	n:130000
Cons ci ratio: 1.192309e-01	ci left: 7.754245e-03	ci right 8.744801e-03	k: 1071	n:130000
KS ci ratio: 3.717885e-02	ci left: 7.731046e-02	ci right 8.024682e-02	k: 10240	n:130000
CHD2   130000 perm   40 sec   (3249 perm/sec)   p_kst 7.876923e-02   p_cons 8.238462e-03   p_joint 1.310769e-02

Joint ci ratio: 8.295345e-02	ci left: 1.504830e-02	ci right 1.635758e-02	k: 2197	n:140000
Cons ci ratio: 1.154732e-01	ci left: 7.692614e-03	ci right 8.642212e-03	k: 1142	n:140000
KS ci ratio: 3.585604e-02	ci left: 7.724508e-02	ci right 8.007240e-02	k: 11011	n:140000
CHD2   140000 perm   44 sec   (3200 perm/sec)   p_kst 7.865000e-02   p_cons 8.157143e-03   p_joint 1.569286e-02

Joint ci ratio: 8.075248e-02	ci left: 1.484170e-02	ci right 1.609713e-02	k: 2319	n:150000
Cons ci ratio: 1.115873e-01	ci left: 7.704442e-03	ci right 8.621389e-03	k: 1223	n:150000
KS ci ratio: 3.458708e-02	ci left: 7.751411e-02	ci right 8.024886e-02	k: 11831	n:150000
CHD2   150000 perm   51 sec   (2938 perm/sec)   p_kst 7.887333e-02   p_cons 8.153333e-03   p_joint 1.546000e-02

Joint ci ratio: 7.372509e-02	ci left: 1.672198e-02	ci right 1.800810e-02	k: 2777	n:160000
Cons ci ratio: 1.149266e-01	ci left: 6.803696e-03	ci right 7.639310e-03	k: 1154	n:160000
KS ci ratio: 3.351158e-02	ci left: 7.745954e-02	ci right 8.010574e-02	k: 12604	n:160000
CHD2   160000 perm   58 sec   (2741 perm/sec)   p_kst 7.877500e-02   p_cons 7.212500e-03   p_joint 1.735625e-02

Joint ci ratio: 7.159331e-02	ci left: 1.670861e-02	ci right 1.795499e-02	k: 2945	n:170000
Cons ci ratio: 1.119643e-01	ci left: 6.757826e-03	ci right 7.565000e-03	k: 1216	n:170000
KS ci ratio: 3.251208e-02	ci left: 7.749431e-02	ci right 8.006125e-02	k: 13391	n:170000
CHD2   170000 perm   63 sec   (2692 perm/sec)   p_kst 7.877059e-02   p_cons 7.152941e-03   p_joint 1.732353e-02

Joint ci ratio: 7.104226e-02	ci left: 1.604207e-02	ci right 1.722913e-02	k: 2993	n:180000
Cons ci ratio: 1.092197e-01	ci left: 6.717300e-03	ci right 7.498701e-03	k: 1278	n:180000
KS ci ratio: 3.159216e-02	ci left: 7.754832e-02	ci right 8.004305e-02	k: 14182	n:180000
CHD2   180000 perm   67 sec   (2689 perm/sec)   p_kst 7.878889e-02   p_cons 7.100000e-03   p_joint 1.662778e-02

Joint ci ratio: 7.390893e-02	ci left: 1.404995e-02	ci right 1.513335e-02	k: 2771	n:190000
Cons ci ratio: 9.392537e-02	ci left: 8.657329e-03	ci right 9.515644e-03	k: 1725	n:190000
KS ci ratio: 3.071054e-02	ci left: 7.776480e-02	ci right 8.019544e-02	k: 15005	n:190000
CHD2   190000 perm   71 sec   (2682 perm/sec)   p_kst 7.897368e-02   p_cons 9.078947e-03   p_joint 1.458421e-02

Outputting figure to mutsig2_images.part000000000037/CHD2.6_5643_190000_0.078974_0.0090789_0.014584.png
                gene_name: CHD2
               theta_stop: 0.094 
                    nperm: 190000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.0091 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 47 percent done.
CHEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
CHEK1   10000 perm   2 sec   (4919 perm/sec)   p_kst 1.893000e-01   p_cons 1.933000e-01   p_joint 3.258000e-01

Outputting figure to mutsig2_images.part000000000037/CHEK1.6_1479_10000_0.1893_0.1933_0.3258.png
                gene_name: CHEK1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 49 percent done.
CHRDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
Cons ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KS ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
CHRDL1   10000 perm   4 sec   (2442 perm/sec)   p_kst 2.870000e-01   p_cons 6.352000e-01   p_joint 6.182000e-01

Outputting figure to mutsig2_images.part000000000037/CHRDL1.5_1421_10000_0.287_0.6352_0.6182.png
                gene_name: CHRDL1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 51 percent done.
CHRNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
Cons ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
CHRNA6   10000 perm   2 sec   (4341 perm/sec)   p_kst 5.170000e-02   p_cons 2.373000e-01   p_joint 8.050000e-02

Joint ci ratio: 8.934291e-02	ci left: 8.386398e-02	ci right 9.175634e-02	k: 1755	n:20000
Cons ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
CHRNA6   20000 perm   11 sec   (1778 perm/sec)   p_kst 5.360000e-02   p_cons 2.227500e-01   p_joint 8.775000e-02

Joint ci ratio: 7.725672e-02	ci left: 7.597188e-02	ci right 8.210994e-02	k: 2370	n:30000
Cons ci ratio: 4.022247e-02	ci left: 2.356062e-01	ci right 2.453108e-01	k: 7213	n:30000
KS ci ratio: 9.579296e-02	ci left: 5.032870e-02	ci right 5.542499e-02	k: 1585	n:30000
CHRNA6   30000 perm   16 sec   (1929 perm/sec)   p_kst 5.283333e-02   p_cons 2.404333e-01   p_joint 7.900000e-02

Outputting figure to mutsig2_images.part000000000037/CHRNA6.5_1509_30000_0.052833_0.24043_0.079.png
                gene_name: CHRNA6
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 53 percent done.
CHD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
Cons ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
KS ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
CHD1L   10000 perm   2 sec   (4757 perm/sec)   p_kst 8.538000e-01   p_cons 8.114000e-01   p_joint 9.827000e-01

Outputting figure to mutsig2_images.part000000000037/CHD1L.4_2786_10000_0.8538_0.8114_0.9827.png
                gene_name: CHD1L
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 56 percent done.
CHFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
Cons ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
KS ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
CHFR   10000 perm   2 sec   (6047 perm/sec)   p_kst 8.882000e-01   p_cons 1.861000e-01   p_joint 6.981000e-01

Outputting figure to mutsig2_images.part000000000037/CHFR.4_2160_10000_0.8882_0.1861_0.6981.png
                gene_name: CHFR
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 58 percent done.
CHIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
CHIA   10000 perm   4 sec   (2765 perm/sec)   p_kst 2.783000e-01   p_cons 4.618000e-01   p_joint 4.722000e-01

Outputting figure to mutsig2_images.part000000000037/CHIA.4_1475_10000_0.2783_0.4618_0.4722.png
                gene_name: CHIA
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
CHIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
KS ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
CHIT1   10000 perm   5 sec   (1935 perm/sec)   p_kst 8.690000e-01   p_cons 9.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHIT1.4_1445_10000_0.869_0.9342_1.png
                gene_name: CHIT1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 4.373378e-03	ci left: 9.854505e-01	ci right 9.898586e-01	k: 9878	n:10000
KS ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
CHN1   10000 perm   2 sec   (4637 perm/sec)   p_kst 1.509000e-01   p_cons 9.878000e-01   p_joint 1.895000e-01

Outputting figure to mutsig2_images.part000000000037/CHN1.4_1432_10000_0.1509_0.9878_0.1895.png
                gene_name: CHN1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 64 percent done.
CHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
CHN2   10000 perm   4 sec   (2257 perm/sec)   p_kst 2.856000e-01   p_cons 8.454000e-01   p_joint 3.365000e-01

Outputting figure to mutsig2_images.part000000000037/CHN2.4_1627_10000_0.2856_0.8454_0.3365.png
                gene_name: CHN2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 67 percent done.
CGRRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
CGRRF1   10000 perm   2 sec   (6263 perm/sec)   p_kst 8.530000e-01   p_cons 1.620000e-02   p_joint 4.187000e-01

Joint ci ratio: 8.425854e-02	ci left: 9.352072e-02	ci right 1.017967e-01	k: 1952	n:20000
Cons ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
KS ci ratio: 1.152592e-02	ci left: 8.476107e-01	ci right 8.574866e-01	k: 17052	n:20000
CGRRF1   20000 perm   7 sec   (3012 perm/sec)   p_kst 8.526000e-01   p_cons 1.335000e-02   p_joint 9.760000e-02

Joint ci ratio: 6.885588e-02	ci left: 9.413290e-02	ci right 1.008786e-01	k: 2924	n:30000
Cons ci ratio: 1.946858e-01	ci left: 1.203433e-02	ci right 1.466117e-02	k: 399	n:30000
KS ci ratio: 9.461770e-03	ci left: 8.471558e-01	ci right 8.552427e-01	k: 25537	n:30000
CGRRF1   30000 perm   13 sec   (2331 perm/sec)   p_kst 8.512333e-01   p_cons 1.330000e-02   p_joint 9.746667e-02

Joint ci ratio: 8.509808e-02	ci left: 4.822732e-02	ci right 5.253826e-02	k: 2014	n:40000
Cons ci ratio: 1.706141e-01	ci left: 1.191290e-02	ci right 1.415862e-02	k: 520	n:40000
KS ci ratio: 8.205634e-03	ci left: 8.473462e-01	ci right 8.543528e-01	k: 34035	n:40000
CGRRF1   40000 perm   19 sec   (2088 perm/sec)   p_kst 8.508750e-01   p_cons 1.300000e-02   p_joint 5.035000e-02

Joint ci ratio: 4.246666e-02	ci left: 1.424993e-01	ci right 1.487019e-01	k: 7279	n:50000
Cons ci ratio: 1.513417e-01	ci left: 1.223721e-02	ci right 1.425989e-02	k: 661	n:50000
KS ci ratio: 7.364003e-03	ci left: 8.468601e-01	ci right 8.531393e-01	k: 42501	n:50000
CGRRF1   50000 perm   26 sec   (1928 perm/sec)   p_kst 8.500200e-01   p_cons 1.322000e-02   p_joint 1.455800e-01

Joint ci ratio: 3.571581e-02	ci left: 1.642055e-01	ci right 1.701934e-01	k: 10031	n:60000
Cons ci ratio: 1.369723e-01	ci left: 1.254355e-02	ci right 1.440395e-02	k: 807	n:60000
KS ci ratio: 6.733864e-03	ci left: 8.466977e-01	ci right 8.524351e-01	k: 50975	n:60000
CGRRF1   60000 perm   33 sec   (1832 perm/sec)   p_kst 8.495833e-01   p_cons 1.345000e-02   p_joint 1.671833e-01

Joint ci ratio: 3.308851e-02	ci left: 1.642437e-01	ci right 1.697839e-01	k: 11690	n:70000
Cons ci ratio: 1.263822e-01	ci left: 1.269969e-02	ci right 1.442670e-02	k: 948	n:70000
KS ci ratio: 6.233225e-03	ci left: 8.469591e-01	ci right 8.522691e-01	k: 59474	n:70000
CGRRF1   70000 perm   40 sec   (1756 perm/sec)   p_kst 8.496286e-01   p_cons 1.354286e-02   p_joint 1.670000e-01

Joint ci ratio: 3.195635e-02	ci left: 1.557767e-01	ci right 1.608481e-01	k: 12664	n:80000
Cons ci ratio: 1.189205e-01	ci left: 1.260254e-02	ci right 1.420803e-02	k: 1071	n:80000
KS ci ratio: 5.825012e-03	ci left: 8.473809e-01	ci right 8.523437e-01	k: 67990	n:80000
CGRRF1   80000 perm   47 sec   (1693 perm/sec)   p_kst 8.498750e-01   p_cons 1.338750e-02   p_joint 1.583000e-01

Joint ci ratio: 3.033660e-02	ci left: 1.541098e-01	ci right 1.588680e-01	k: 14083	n:90000
Cons ci ratio: 1.112346e-01	ci left: 1.285345e-02	ci right 1.437813e-02	k: 1224	n:90000
KS ci ratio: 5.489891e-03	ci left: 8.476168e-01	ci right 8.522940e-01	k: 76497	n:90000
CGRRF1   90000 perm   55 sec   (1639 perm/sec)   p_kst 8.499667e-01   p_cons 1.360000e-02   p_joint 1.564778e-01

Joint ci ratio: 2.662764e-02	ci left: 1.757430e-01	ci right 1.804957e-01	k: 17811	n:100000
Cons ci ratio: 1.055701e-01	ci left: 1.288153e-02	ci right 1.432689e-02	k: 1359	n:100000
KS ci ratio: 5.207072e-03	ci left: 8.477919e-01	ci right 8.522278e-01	k: 85002	n:100000
CGRRF1   100000 perm   60 sec   (1657 perm/sec)   p_kst 8.500200e-01   p_cons 1.359000e-02   p_joint 1.781100e-01

Joint ci ratio: 2.742424e-02	ci left: 1.544930e-01	ci right 1.587978e-01	k: 17230	n:110000
Cons ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
KS ci ratio: 4.956987e-03	ci left: 8.482967e-01	ci right 8.525212e-01	k: 93546	n:110000
CGRRF1   110000 perm   66 sec   (1673 perm/sec)   p_kst 8.504182e-01   p_cons 1.352727e-02   p_joint 1.566364e-01

Joint ci ratio: 2.156576e-02	ci left: 2.135582e-01	ci right 2.182222e-01	k: 25906	n:120000
Cons ci ratio: 9.607401e-02	ci left: 1.302551e-02	ci right 1.434815e-02	k: 1641	n:120000
KS ci ratio: 4.746289e-03	ci left: 8.483693e-01	ci right 8.524137e-01	k: 102048	n:120000
CGRRF1   120000 perm   72 sec   (1678 perm/sec)   p_kst 8.504000e-01   p_cons 1.367500e-02   p_joint 2.158833e-01

Outputting figure to mutsig2_images.part000000000037/CGRRF1.3_1023_120000_0.8504_0.013675_0.21588.png
                gene_name: CGRRF1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
CH25H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
Cons ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
KS ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
CH25H   10000 perm   2 sec   (6643 perm/sec)   p_kst 2.882000e-01   p_cons 5.958000e-01   p_joint 3.560000e-01

Outputting figure to mutsig2_images.part000000000037/CH25H.3_823_10000_0.2882_0.5958_0.356.png
                gene_name: CH25H
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
CHID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
Cons ci ratio: 1.382680e-02	ci left: 8.830891e-01	ci right 8.954831e-01	k: 8894	n:10000
KS ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
CHID1   10000 perm   2 sec   (4296 perm/sec)   p_kst 2.160000e-01   p_cons 8.894000e-01   p_joint 3.371000e-01

Outputting figure to mutsig2_images.part000000000037/CHID1.3_1309_10000_0.216_0.8894_0.3371.png
                gene_name: CHID1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 73 percent done.
CHORDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
CHORDC1   10000 perm   2 sec   (4261 perm/sec)   p_kst 1.240000e-02   p_cons 2.666000e-01   p_joint 9.500000e-03

Joint ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
Cons ci ratio: 4.492720e-02	ci left: 2.694652e-01	ci right 2.819001e-01	k: 5513	n:20000
KS ci ratio: 2.458647e-01	ci left: 1.100641e-02	ci right 1.413769e-02	k: 250	n:20000
CHORDC1   20000 perm   6 sec   (3163 perm/sec)   p_kst 1.250000e-02   p_cons 2.756500e-01   p_joint 1.645000e-02

Joint ci ratio: 1.291342e-01	ci left: 2.787259e-02	ci right 3.175251e-02	k: 893	n:30000
Cons ci ratio: 3.699158e-02	ci left: 2.673015e-01	ci right 2.774093e-01	k: 8170	n:30000
KS ci ratio: 2.022506e-01	ci left: 1.111515e-02	ci right 1.364726e-02	k: 370	n:30000
CHORDC1   30000 perm   11 sec   (2843 perm/sec)   p_kst 1.233333e-02   p_cons 2.723333e-01   p_joint 2.976667e-02

Joint ci ratio: 1.607412e-01	ci left: 1.347140e-02	ci right 1.584982e-02	k: 585	n:40000
Cons ci ratio: 3.192827e-02	ci left: 2.693099e-01	ci right 2.780730e-01	k: 10947	n:40000
KS ci ratio: 1.716182e-01	ci left: 1.176925e-02	ci right 1.400230e-02	k: 514	n:40000
CHORDC1   40000 perm   15 sec   (2689 perm/sec)   p_kst 1.285000e-02   p_cons 2.736750e-01   p_joint 1.462500e-02

Joint ci ratio: 1.291920e-01	ci left: 1.691079e-02	ci right 1.926563e-02	k: 903	n:50000
Cons ci ratio: 2.849159e-02	ci left: 2.706911e-01	ci right 2.785350e-01	k: 13730	n:50000
KS ci ratio: 1.549391e-01	ci left: 1.165993e-02	ci right 1.363725e-02	k: 631	n:50000
CHORDC1   50000 perm   19 sec   (2593 perm/sec)   p_kst 1.262000e-02   p_cons 2.746000e-01   p_joint 1.806000e-02

Joint ci ratio: 1.161388e-01	ci left: 1.755012e-02	ci right 1.973012e-02	k: 1117	n:60000
Cons ci ratio: 2.598872e-02	ci left: 2.713468e-01	ci right 2.785083e-01	k: 16495	n:60000
KS ci ratio: 1.407272e-01	ci left: 1.186757e-02	ci right 1.368001e-02	k: 765	n:60000
CHORDC1   60000 perm   23 sec   (2614 perm/sec)   p_kst 1.275000e-02   p_cons 2.749167e-01   p_joint 1.861667e-02

Joint ci ratio: 1.087334e-01	ci left: 1.723652e-02	ci right 1.923227e-02	k: 1275	n:70000
Cons ci ratio: 2.403275e-02	ci left: 2.720787e-01	ci right 2.787113e-01	k: 19277	n:70000
KS ci ratio: 1.313090e-01	ci left: 1.174535e-02	ci right 1.340970e-02	k: 879	n:70000
CHORDC1   70000 perm   25 sec   (2768 perm/sec)   p_kst 1.255714e-02   p_cons 2.753857e-01   p_joint 1.821429e-02

Joint ci ratio: 1.131729e-01	ci left: 1.393818e-02	ci right 1.562228e-02	k: 1181	n:80000
Cons ci ratio: 2.246159e-02	ci left: 2.726303e-01	ci right 2.788360e-01	k: 22058	n:80000
KS ci ratio: 1.265583e-01	ci left: 1.109954e-02	ci right 1.261118e-02	k: 947	n:80000
CHORDC1   80000 perm   28 sec   (2884 perm/sec)   p_kst 1.183750e-02   p_cons 2.757250e-01   p_joint 1.476250e-02

Joint ci ratio: 1.080169e-01	ci left: 1.364262e-02	ci right 1.521113e-02	k: 1297	n:90000
Cons ci ratio: 2.118723e-02	ci left: 2.726161e-01	ci right 2.784650e-01	k: 24798	n:90000
KS ci ratio: 1.187862e-01	ci left: 1.124491e-02	ci right 1.267569e-02	k: 1075	n:90000
CHORDC1   90000 perm   30 sec   (2975 perm/sec)   p_kst 1.194444e-02   p_cons 2.755333e-01   p_joint 1.441111e-02

Joint ci ratio: 1.143752e-01	ci left: 1.094554e-02	ci right 1.228301e-02	k: 1160	n:100000
Cons ci ratio: 2.006452e-02	ci left: 2.734702e-01	ci right 2.790228e-01	k: 27624	n:100000
KS ci ratio: 1.123843e-01	ci left: 1.134404e-02	ci right 1.270448e-02	k: 1201	n:100000
CHORDC1   100000 perm   33 sec   (3040 perm/sec)   p_kst 1.201000e-02   p_cons 2.762400e-01   p_joint 1.160000e-02

Joint ci ratio: 1.106006e-01	ci left: 1.066605e-02	ci right 1.192355e-02	k: 1241	n:110000
Cons ci ratio: 1.916977e-02	ci left: 2.727887e-01	ci right 2.780777e-01	k: 30297	n:110000
KS ci ratio: 1.072858e-01	ci left: 1.134719e-02	ci right 1.264237e-02	k: 1318	n:110000
CHORDC1   110000 perm   36 sec   (3093 perm/sec)   p_kst 1.198182e-02   p_cons 2.754273e-01   p_joint 1.128182e-02

Joint ci ratio: 9.439774e-02	ci left: 1.349748e-02	ci right 1.484282e-02	k: 1699	n:120000
Cons ci ratio: 1.834997e-02	ci left: 2.729818e-01	ci right 2.780457e-01	k: 33061	n:120000
KS ci ratio: 1.055737e-01	ci left: 1.075832e-02	ci right 1.196547e-02	k: 1362	n:120000
CHORDC1   120000 perm   38 sec   (3132 perm/sec)   p_kst 1.135000e-02   p_cons 2.755083e-01   p_joint 1.415833e-02

Joint ci ratio: 9.124041e-02	ci left: 1.336082e-02	ci right 1.464561e-02	k: 1819	n:130000
Cons ci ratio: 1.762165e-02	ci left: 2.732720e-01	ci right 2.781380e-01	k: 35841	n:130000
KS ci ratio: 1.020130e-01	ci left: 1.065751e-02	ci right 1.181060e-02	k: 1459	n:130000
CHORDC1   130000 perm   41 sec   (3160 perm/sec)   p_kst 1.122308e-02   p_cons 2.757000e-01   p_joint 1.399231e-02

Joint ci ratio: 8.453009e-02	ci left: 1.448866e-02	ci right 1.577439e-02	k: 2117	n:140000
Cons ci ratio: 1.697794e-02	ci left: 2.734244e-01	ci right 2.781134e-01	k: 38607	n:140000
KS ci ratio: 9.843867e-02	ci left: 1.064835e-02	ci right 1.175775e-02	k: 1567	n:140000
CHORDC1   140000 perm   46 sec   (3075 perm/sec)   p_kst 1.119286e-02   p_cons 2.757643e-01   p_joint 1.512143e-02

Outputting figure to mutsig2_images.part000000000037/CHORDC1.3_1043_140000_0.011193_0.27576_0.015121.png
                gene_name: CHORDC1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 76 percent done.
CHPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
Cons ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
KS ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
CHPF   10000 perm   2 sec   (6194 perm/sec)   p_kst 7.077000e-01   p_cons 2.760000e-02   p_joint 6.990000e-02

Joint ci ratio: 5.528966e-02	ci left: 1.952669e-01	ci right 2.064202e-01	k: 4016	n:20000
Cons ci ratio: 1.642181e-01	ci left: 2.542143e-02	ci right 3.001725e-02	k: 553	n:20000
KS ci ratio: 1.788459e-02	ci left: 6.996816e-01	ci right 7.123584e-01	k: 14121	n:20000
CHPF   20000 perm   5 sec   (3705 perm/sec)   p_kst 7.060500e-01   p_cons 2.765000e-02   p_joint 2.008000e-01

Joint ci ratio: 5.846138e-02	ci left: 1.265100e-01	ci right 1.341618e-01	k: 3909	n:30000
Cons ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
KS ci ratio: 1.464916e-02	ci left: 6.995351e-01	ci right 7.098918e-01	k: 21142	n:30000
CHPF   30000 perm   8 sec   (3992 perm/sec)   p_kst 7.047333e-01   p_cons 2.763333e-02   p_joint 1.303000e-01

Joint ci ratio: 2.717913e-02	ci left: 3.374499e-01	ci right 3.467730e-01	k: 13684	n:40000
Cons ci ratio: 1.085900e-01	ci left: 2.983424e-02	ci right 3.328421e-02	k: 1261	n:40000
KS ci ratio: 1.271582e-02	ci left: 6.992733e-01	ci right 7.082471e-01	k: 28151	n:40000
CHPF   40000 perm   10 sec   (4109 perm/sec)   p_kst 7.037750e-01   p_cons 3.152500e-02   p_joint 3.421000e-01

Joint ci ratio: 2.925439e-02	ci left: 2.603391e-01	ci right 2.680883e-01	k: 13210	n:50000
Cons ci ratio: 9.749364e-02	ci left: 2.979099e-02	ci right 3.286374e-02	k: 1565	n:50000
KS ci ratio: 1.138200e-02	ci left: 6.994349e-01	ci right 7.074615e-01	k: 35173	n:50000
CHPF   50000 perm   12 sec   (4173 perm/sec)   p_kst 7.034600e-01   p_cons 3.130000e-02   p_joint 2.642000e-01

Outputting figure to mutsig2_images.part000000000037/CHPF.3_2344_50000_0.70346_0.0313_0.2642.png
                gene_name: CHPF
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 78 percent done.
CHRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.075725e-03	ci left: 9.871939e-01	ci right 9.913137e-01	k: 9894	n:10000
Cons ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
KS ci ratio: 2.552061e-02	ci left: 6.932301e-01	ci right 7.112519e-01	k: 7023	n:10000
CHRM5   10000 perm   2 sec   (5978 perm/sec)   p_kst 7.023000e-01   p_cons 2.425000e-01   p_joint 9.894000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM5.3_1603_10000_0.7023_0.2425_0.9894.png
                gene_name: CHRM5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
CHRNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
KS ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
CHRNA2   10000 perm   2 sec   (6574 perm/sec)   p_kst 7.904000e-01   p_cons 5.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRNA2.3_1614_10000_0.7904_0.5966_1.png
                gene_name: CHRNA2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CHEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 2.318085e-02	ci left: 7.321932e-01	ci right 7.494663e-01	k: 7409	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
CHEK2   10000 perm   2 sec   (4797 perm/sec)   p_kst 4.535000e-01   p_cons 7.409000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000037/CHEK2.2_1821_10000_0.4535_0.7409_0.6564.png
                gene_name: CHEK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 84 percent done.
CHERP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
KS ci ratio: 1.699539e-02	ci left: 8.344982e-01	ci right 8.489022e-01	k: 8418	n:10000
CHERP   10000 perm   2 sec   (5302 perm/sec)   p_kst 8.418000e-01   p_cons 6.241000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHERP.2_2819_10000_0.8418_0.6241_1.png
                gene_name: CHERP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CHI3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
CHI3L2   10000 perm   2 sec   (6385 perm/sec)   p_kst 6.972000e-01   p_cons 4.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHI3L2.2_1213_10000_0.6972_0.4291_1.png
                gene_name: CHI3L2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CHKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
Cons ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
KS ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
CHKB   10000 perm   2 sec   (5978 perm/sec)   p_kst 4.210000e-01   p_cons 1.677000e-01   p_joint 1.812000e-01

Outputting figure to mutsig2_images.part000000000037/CHKB.2_1232_10000_0.421_0.1677_0.1812.png
                gene_name: CHKB
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
CHMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
CHMP5   10000 perm   1 sec   (7675 perm/sec)   p_kst 5.826000e-01   p_cons 2.125000e-01   p_joint 4.934000e-01

Outputting figure to mutsig2_images.part000000000037/CHMP5.2_692_10000_0.5826_0.2125_0.4934.png
                gene_name: CHMP5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 93 percent done.
CHRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
Cons ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
KS ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
CHRM1   10000 perm   2 sec   (5975 perm/sec)   p_kst 9.360000e-02   p_cons 6.933000e-01   p_joint 8.565000e-01

Joint ci ratio: 5.136199e-02	ci left: 2.197234e-01	ci right 2.313565e-01	k: 4510	n:20000
Cons ci ratio: 1.867424e-02	ci left: 6.813259e-01	ci right 6.942195e-01	k: 13756	n:20000
KS ci ratio: 8.552611e-02	ci left: 9.097040e-02	ci right 9.914776e-02	k: 1900	n:20000
CHRM1   20000 perm   4 sec   (5277 perm/sec)   p_kst 9.500000e-02   p_cons 6.878000e-01   p_joint 2.255000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM1.2_1387_20000_0.095_0.6878_0.2255.png
                gene_name: CHRM1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 96 percent done.
CHRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
CHRM4   10000 perm   1 sec   (7074 perm/sec)   p_kst 9.010000e-02   p_cons 5.084000e-01   p_joint 2.495000e-01

Joint ci ratio: 4.954244e-02	ci left: 2.324584e-01	ci right 2.443178e-01	k: 4767	n:20000
Cons ci ratio: 2.727658e-02	ci left: 5.010456e-01	ci right 5.149520e-01	k: 10160	n:20000
KS ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
CHRM4   20000 perm   3 sec   (6221 perm/sec)   p_kst 8.995000e-02   p_cons 5.080000e-01   p_joint 2.383500e-01

Outputting figure to mutsig2_images.part000000000037/CHRM4.2_1444_20000_0.08995_0.508_0.23835.png
                gene_name: CHRM4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
CHRNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KS ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
CHRNA3   10000 perm   1 sec   (7173 perm/sec)   p_kst 6.110000e-01   p_cons 6.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRNA3.2_1627_10000_0.611_0.6567_1.png
                gene_name: CHRNA3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000037
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 37 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4421823: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000038> was used as the working directory.
Started at Wed Oct 24 17:36:34 2012
Results reported at Wed Oct 24 17:57:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000038.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000038.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 38  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000038.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1285.40 sec.
    Max Memory :      5408 MB
    Max Swap   :      7748 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
38
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 38
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 38: processing genes 3348 - 3438
Calculating significance of each gene.
Using projection method.
3348	CHRNA7	1.293264e-01
3349	CHRNA9	4.300462e-01
3350	CHRNB1	3.755580e-01
3351	CHRNB2	8.883561e-01
3352	CHRNB3	1
3353	CHRNB4	3.332238e-01
3354	CHRND	3.052390e-03
3355	CHRNE	4.548793e-01
3356	CHRNG	1
3357	CHST1	4.673045e-01
3358	CHST10	6.824800e-01
3359	CHST11	8.732552e-01
3360	CHST12	9.846723e-02
3361	CHST13	6.859458e-02
3362	CHST14	1
3363	CHST15	6.238119e-01
3364	CHST2	2.180659e-01
3365	CHST3	2.162160e-01
3366	CHST4	1
3367	CHST5	3.331131e-01
3368	CHST6	4.559256e-01
3369	CHST8	1
3370	CHST9	7.186269e-01
3371	CHSY1	9.676587e-01
3372	CHSY3	2.413932e-01
3373	CHTF18	9.742242e-01
3374	CHTF8	1
3375	CHUK	6.118287e-01
3376	CHURC1	1
3377	CIAO1	8.728520e-01
3378	CIAPIN1	1
3379	CIB1	1
3380	CIB2	2.392360e-01
3381	CIB3	1.503213e-01
3382	CIB4	6.212261e-03
3383	CIC	9.868652e-01
3384	CIDEA	1
3385	CIDEB	1
3386	CIDEC	6.797494e-01
3387	CIITA	9.882190e-01
3388	CILP	9.891195e-01
3389	CILP2	9.212960e-01
3390	CINP	1
3391	CIR1	7.245529e-01
3392	CIRBP	1
3393	CIRH1A	9.584988e-01
3394	CISD1	1
3395	CISD2	1
3396	CISH	1
3397	CIT	9.999743e-01
3398	CITED1	1
3399	CITED2	5.595137e-01
3400	CIZ1	9.771410e-01
3401	CKAP2	3.093750e-01
3402	CKAP2L	2.542977e-01
3403	CKAP4	1.229773e-01
3404	CKAP5	9.994886e-01
3405	CKB	1
3406	CKLF	1
3407	CKM	8.957599e-01
3408	CKMT1A	2.948286e-01
3409	CKMT1B	3.849147e-01
3410	CKMT2	5.427821e-01
3411	CKS1B	1
3412	CKS2	1
3413	CLASP1	9.583198e-01
3414	CLASP2	1
3415	CLC	2.504574e-01
3416	CLCA1	1
3417	CLCA2	7.272501e-02
3418	CLCA4	4.877774e-01
3419	CLCC1	1
3420	CLCF1	1
3421	CLCN1	8.890653e-01
3422	CLCN2	9.977233e-01
3423	CLCN3	8.082343e-01
3424	CLCN4	8.415042e-01
3425	CLCN5	8.910949e-01
3426	CLCN6	9.070738e-01
3427	CLCN7	9.752533e-01
3428	CLCNKA	7.025811e-01
3429	CLCNKB	9.796979e-01
3430	CLDN1	7.727145e-01
3431	CLDN10	7.958355e-01
3432	CLDN11	4.124715e-02
3433	CLDN12	7.892463e-01
3434	CLDN14	4.810665e-02
3435	CLDN15	6.156065e-01
3436	CLDN16	2.434986e-01
3437	CLDN17	4.159118e-01
3438	CLDN18	8.075793e-01
Done

Running MutSig 2:
Scatter job 38: processing genes 3348 - 3438
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.036773e-02	ci left: 6.153256e-01	ci right 6.344016e-01	k: 6249	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
CLCN1   10000 perm   2 sec   (4740 perm/sec)   p_kst 5.000000e-01   p_cons 4.111000e-01   p_joint 6.249000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN1.15_3059_10000_0.5_0.4111_0.6249.png
                gene_name: CLCN1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 2 percent done.
CIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CIT   10000 perm   2 sec   (4460 perm/sec)   p_kst 1   p_cons 6.007000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIT.13_6268_10000_1_0.6007_1.png
                gene_name: CIT
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
CLCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
CLCA4   10000 perm   2 sec   (5596 perm/sec)   p_kst 4.142000e-01   p_cons 7.780000e-02   p_joint 2.491000e-01

Joint ci ratio: 6.198343e-02	ci left: 1.614596e-01	ci right 1.718375e-01	k: 3332	n:20000
Cons ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
KS ci ratio: 3.297459e-02	ci left: 4.071617e-01	ci right 4.208633e-01	k: 8280	n:20000
CLCA4   20000 perm   4 sec   (5113 perm/sec)   p_kst 4.140000e-01   p_cons 7.025000e-02   p_joint 1.666000e-01

Joint ci ratio: 6.200390e-02	ci left: 1.139095e-01	ci right 1.212314e-01	k: 3526	n:30000
Cons ci ratio: 8.365433e-02	ci left: 6.533996e-02	ci right 7.107733e-02	k: 2045	n:30000
KS ci ratio: 2.694668e-02	ci left: 4.080191e-01	ci right 4.191976e-01	k: 12408	n:30000
CLCA4   30000 perm   6 sec   (4911 perm/sec)   p_kst 4.136000e-01   p_cons 6.816667e-02   p_joint 1.175333e-01

Outputting figure to mutsig2_images.part000000000038/CLCA4.12_2816_30000_0.4136_0.068167_0.11753.png
                gene_name: CLCA4
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 5 percent done.
CHRND
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
CHRND   10000 perm   2 sec   (5373 perm/sec)   p_kst 7.174000e-01   p_cons 1.116000e-01   p_joint 3.125000e-01

Joint ci ratio: 3.683026e-02	ci left: 3.548870e-01	ci right 3.682533e-01	k: 7231	n:20000
Cons ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
KS ci ratio: 1.724022e-02	ci left: 7.147776e-01	ci right 7.272581e-01	k: 14421	n:20000
CHRND   20000 perm   4 sec   (4958 perm/sec)   p_kst 7.210500e-01   p_cons 1.123000e-01   p_joint 3.615500e-01

Outputting figure to mutsig2_images.part000000000038/CHRND.11_1602_20000_0.72105_0.1123_0.36155.png
                gene_name: CHRND
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
CLCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
Cons ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KS ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
CLCA2   10000 perm   2 sec   (5265 perm/sec)   p_kst 2.592000e-01   p_cons 4.220000e-01   p_joint 3.098000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA2.11_2888_10000_0.2592_0.422_0.3098.png
                gene_name: CLCA2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
CHST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
Cons ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
KS ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
CHST1   10000 perm   2 sec   (6330 perm/sec)   p_kst 5.790000e-01   p_cons 4.961000e-01   p_joint 6.699000e-01

Outputting figure to mutsig2_images.part000000000038/CHST1.10_1240_10000_0.579_0.4961_0.6699.png
                gene_name: CHST1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 11 percent done.
CLASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
Cons ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
KS ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
CLASP1   10000 perm   2 sec   (5115 perm/sec)   p_kst 8.433000e-01   p_cons 2.600000e-02   p_joint 7.960000e-02

Joint ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
Cons ci ratio: 1.678361e-01	ci left: 2.431805e-02	ci right 2.882102e-02	k: 530	n:20000
KS ci ratio: 1.143408e-02	ci left: 8.496381e-01	ci right 8.594586e-01	k: 17092	n:20000
CLASP1   20000 perm   4 sec   (4676 perm/sec)   p_kst 8.546000e-01   p_cons 2.650000e-02   p_joint 8.565000e-02

Joint ci ratio: 6.322920e-02	ci left: 1.099643e-01	ci right 1.171774e-01	k: 3406	n:30000
Cons ci ratio: 1.369945e-01	ci left: 2.474400e-02	ci right 2.841512e-02	k: 796	n:30000
KS ci ratio: 9.330668e-03	ci left: 8.506950e-01	ci right 8.587029e-01	k: 25642	n:30000
CLASP1   30000 perm   7 sec   (4512 perm/sec)   p_kst 8.547333e-01   p_cons 2.653333e-02   p_joint 1.135333e-01

Joint ci ratio: 5.006930e-02	ci left: 1.295381e-01	ci right 1.362153e-01	k: 5314	n:40000
Cons ci ratio: 1.071518e-01	ci left: 3.063765e-02	ci right 3.413066e-02	k: 1294	n:40000
KS ci ratio: 8.074268e-03	ci left: 8.514355e-01	ci right 8.583629e-01	k: 34197	n:40000
CLASP1   40000 perm   9 sec   (4391 perm/sec)   p_kst 8.549250e-01   p_cons 3.235000e-02   p_joint 1.328500e-01

Joint ci ratio: 4.408484e-02	ci left: 1.335217e-01	ci right 1.395606e-01	k: 6826	n:50000
Cons ci ratio: 9.601613e-02	ci left: 3.070894e-02	ci right 3.382567e-02	k: 1612	n:50000
KS ci ratio: 7.210293e-03	ci left: 8.522060e-01	ci right 8.583927e-01	k: 42766	n:50000
CLASP1   50000 perm   12 sec   (4288 perm/sec)   p_kst 8.553200e-01   p_cons 3.224000e-02   p_joint 1.365200e-01

Outputting figure to mutsig2_images.part000000000038/CLASP1.8_4825_50000_0.85532_0.03224_0.13652.png
                gene_name: CLASP1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 12 percent done.
CLASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
CLASP2   10000 perm   2 sec   (5138 perm/sec)   p_kst 1.307000e-01   p_cons 7.110000e-02   p_joint 6.940000e-02

Joint ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
Cons ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
KS ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
CLASP2   20000 perm   4 sec   (4662 perm/sec)   p_kst 1.295500e-01   p_cons 6.935000e-02   p_joint 8.630000e-02

Joint ci ratio: 7.618039e-02	ci left: 7.800215e-02	ci right 8.421259e-02	k: 2432	n:30000
Cons ci ratio: 8.423012e-02	ci left: 6.449025e-02	ci right 7.019389e-02	k: 2019	n:30000
KS ci ratio: 5.924797e-02	ci left: 1.235479e-01	ci right 1.311245e-01	k: 3819	n:30000
CLASP2   30000 perm   7 sec   (4471 perm/sec)   p_kst 1.273000e-01   p_cons 6.730000e-02   p_joint 8.106667e-02

Outputting figure to mutsig2_images.part000000000038/CLASP2.8_4673_30000_0.1273_0.0673_0.081067.png
                gene_name: CLASP2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 14 percent done.
CKAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
KS ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
CKAP2L   10000 perm   2 sec   (5851 perm/sec)   p_kst 2.200000e-03   p_cons 8.000000e-02   p_joint 9.000000e-03

Joint ci ratio: 1.818703e-01	ci left: 2.063260e-02	ci right 2.480776e-02	k: 453	n:20000
Cons ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
KS ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
CKAP2L   20000 perm   4 sec   (5333 perm/sec)   p_kst 2.000000e-03   p_cons 8.895000e-02   p_joint 2.265000e-02

Joint ci ratio: 1.852866e-01	ci left: 1.333682e-02	ci right 1.609167e-02	k: 440	n:30000
Cons ci ratio: 7.128489e-02	ci left: 8.829322e-02	ci right 9.485279e-02	k: 2746	n:30000
KS ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
CKAP2L   30000 perm   6 sec   (5128 perm/sec)   p_kst 1.566667e-03   p_cons 9.153333e-02   p_joint 1.466667e-02

Joint ci ratio: 2.243408e-01	ci left: 6.725110e-03	ci right 8.447534e-03	k: 302	n:40000
Cons ci ratio: 6.166680e-02	ci left: 8.891361e-02	ci right 9.459581e-02	k: 3669	n:40000
KS ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
CKAP2L   40000 perm   8 sec   (4971 perm/sec)   p_kst 1.475000e-03   p_cons 9.172500e-02   p_joint 7.550000e-03

Joint ci ratio: 2.319454e-01	ci left: 5.021268e-03	ci right 6.357106e-03	k: 283	n:50000
Cons ci ratio: 5.519964e-02	ci left: 8.908534e-02	ci right 9.416219e-02	k: 4580	n:50000
KS ci ratio: 4.553489e-01	ci left: 1.144576e-03	ci right 1.835386e-03	k: 73	n:50000
CKAP2L   50000 perm   10 sec   (4842 perm/sec)   p_kst 1.460000e-03   p_cons 9.160000e-02   p_joint 5.660000e-03

Joint ci ratio: 2.206370e-01	ci left: 4.655960e-03	ci right 5.826015e-03	k: 313	n:60000
Cons ci ratio: 5.035090e-02	ci left: 8.943515e-02	ci right 9.407109e-02	k: 5504	n:60000
KS ci ratio: 4.175634e-01	ci left: 1.161549e-03	ci right 1.788267e-03	k: 87	n:60000
CKAP2L   60000 perm   13 sec   (4734 perm/sec)   p_kst 1.450000e-03   p_cons 9.173333e-02   p_joint 5.216667e-03

Joint ci ratio: 2.078167e-01	ci left: 4.531583e-03	ci right 5.595794e-03	k: 353	n:70000
Cons ci ratio: 4.653022e-02	ci left: 8.991111e-02	ci right 9.420849e-02	k: 6443	n:70000
KS ci ratio: 3.840992e-01	ci left: 1.201182e-03	ci right 1.784256e-03	k: 103	n:70000
CKAP2L   70000 perm   15 sec   (4630 perm/sec)   p_kst 1.471429e-03   p_cons 9.204286e-02   p_joint 5.042857e-03

Joint ci ratio: 2.003477e-01	ci left: 4.285335e-03	ci right 5.251118e-03	k: 380	n:80000
Cons ci ratio: 4.363797e-02	ci left: 8.962207e-02	ci right 9.363260e-02	k: 7329	n:80000
KS ci ratio: 3.652768e-01	ci left: 1.175589e-03	ci right 1.711615e-03	k: 114	n:80000
CKAP2L   80000 perm   18 sec   (4540 perm/sec)   p_kst 1.425000e-03   p_cons 9.161250e-02   p_joint 4.750000e-03

Joint ci ratio: 1.948304e-01	ci left: 4.041488e-03	ci right 4.924252e-03	k: 402	n:90000
Cons ci ratio: 4.117047e-02	ci left: 8.962398e-02	ci right 9.340239e-02	k: 8235	n:90000
KS ci ratio: 3.475963e-01	ci left: 1.166367e-03	ci right 1.666656e-03	k: 126	n:90000
CKAP2L   90000 perm   20 sec   (4461 perm/sec)   p_kst 1.400000e-03   p_cons 9.150000e-02   p_joint 4.466667e-03

Joint ci ratio: 1.963473e-01	ci left: 3.580192e-03	ci right 4.369007e-03	k: 396	n:100000
Cons ci ratio: 3.911214e-02	ci left: 8.949191e-02	ci right 9.307184e-02	k: 9127	n:100000
KS ci ratio: 3.322572e-01	ci left: 1.159491e-03	ci right 1.630193e-03	k: 138	n:100000
CKAP2L   100000 perm   23 sec   (4386 perm/sec)   p_kst 1.380000e-03   p_cons 9.127000e-02   p_joint 3.960000e-03

Joint ci ratio: 1.877936e-01	ci left: 3.574914e-03	ci right 4.324340e-03	k: 433	n:110000
Cons ci ratio: 3.716746e-02	ci left: 9.012694e-02	ci right 9.354916e-02	k: 10101	n:110000
KS ci ratio: 3.166913e-01	ci left: 1.170996e-03	ci right 1.619591e-03	k: 152	n:110000
CKAP2L   110000 perm   25 sec   (4317 perm/sec)   p_kst 1.381818e-03   p_cons 9.182727e-02   p_joint 3.936364e-03

Joint ci ratio: 2.295147e-01	ci left: 2.146781e-03	ci right 2.711028e-03	k: 290	n:120000
Cons ci ratio: 3.379186e-02	ci left: 9.912691e-02	ci right 1.025424e-01	k: 12099	n:120000
KS ci ratio: 3.022215e-01	ci left: 1.188713e-03	ci right 1.619295e-03	k: 167	n:120000
CKAP2L   120000 perm   28 sec   (4246 perm/sec)   p_kst 1.391667e-03   p_cons 1.008250e-01   p_joint 2.416667e-03

Joint ci ratio: 2.268182e-01	ci left: 2.032399e-03	ci right 2.559426e-03	k: 297	n:130000
Cons ci ratio: 3.251770e-02	ci left: 9.890885e-02	ci right 1.021859e-01	k: 13070	n:130000
KS ci ratio: 2.856875e-01	ci left: 1.239790e-03	ci right 1.659877e-03	k: 187	n:130000
CKAP2L   130000 perm   31 sec   (4180 perm/sec)   p_kst 1.438462e-03   p_cons 1.005385e-01   p_joint 2.284615e-03

Joint ci ratio: 2.472054e-01	ci left: 1.571363e-03	ci right 2.021103e-03	k: 250	n:140000
Cons ci ratio: 3.131934e-02	ci left: 9.905743e-02	ci right 1.022163e-01	k: 14088	n:140000
KS ci ratio: 2.769868e-01	ci left: 1.230901e-03	ci right 1.633061e-03	k: 199	n:140000
CKAP2L   140000 perm   34 sec   (4110 perm/sec)   p_kst 1.421429e-03   p_cons 1.006286e-01   p_joint 1.785714e-03

Joint ci ratio: 2.387914e-01	ci left: 1.579301e-03	ci right 2.013653e-03	k: 268	n:150000
Cons ci ratio: 3.028119e-02	ci left: 9.896961e-02	ci right 1.020192e-01	k: 15073	n:150000
KS ci ratio: 2.659135e-01	ci left: 1.254466e-03	ci right 1.645213e-03	k: 216	n:150000
CKAP2L   150000 perm   37 sec   (4050 perm/sec)   p_kst 1.440000e-03   p_cons 1.004867e-01   p_joint 1.786667e-03

Joint ci ratio: 2.291905e-01	ci left: 1.615925e-03	ci right 2.039954e-03	k: 291	n:160000
Cons ci ratio: 2.932058e-02	ci left: 9.901226e-02	ci right 1.019647e-01	k: 16077	n:160000
KS ci ratio: 2.560702e-01	ci left: 1.275365e-03	ci right 1.655568e-03	k: 233	n:160000
CKAP2L   160000 perm   40 sec   (3991 perm/sec)   p_kst 1.456250e-03   p_cons 1.004812e-01   p_joint 1.818750e-03

Joint ci ratio: 2.213668e-01	ci left: 1.637433e-03	ci right 2.050441e-03	k: 312	n:170000
Cons ci ratio: 2.845151e-02	ci left: 9.901618e-02	ci right 1.018798e-01	k: 17075	n:170000
KS ci ratio: 2.472448e-01	ci left: 1.294040e-03	ci right 1.664472e-03	k: 250	n:170000
CKAP2L   170000 perm   43 sec   (3934 perm/sec)   p_kst 1.470588e-03   p_cons 1.004412e-01   p_joint 1.835294e-03

Joint ci ratio: 1.962739e-01	ci left: 1.994114e-03	ci right 2.433275e-03	k: 397	n:180000
Cons ci ratio: 2.940470e-02	ci left: 8.853828e-02	ci right 9.118606e-02	k: 16174	n:180000
KS ci ratio: 2.410817e-01	ci left: 1.289953e-03	ci right 1.648634e-03	k: 263	n:180000
CKAP2L   180000 perm   46 sec   (3880 perm/sec)   p_kst 1.461111e-03   p_cons 8.985556e-02   p_joint 2.205556e-03

Joint ci ratio: 2.055495e-01	ci left: 1.714187e-03	ci right 2.111783e-03	k: 362	n:190000
Cons ci ratio: 2.865236e-02	ci left: 8.839262e-02	ci right 9.096729e-02	k: 17038	n:190000
KS ci ratio: 2.345113e-01	ci left: 1.296305e-03	ci right 1.645505e-03	k: 278	n:190000
CKAP2L   190000 perm   50 sec   (3827 perm/sec)   p_kst 1.463158e-03   p_cons 8.967368e-02   p_joint 1.905263e-03

Joint ci ratio: 2.143131e-01	ci left: 1.491078e-03	ci right 1.853611e-03	k: 333	n:200000
Cons ci ratio: 2.794466e-02	ci left: 8.832193e-02	ci right 9.082998e-02	k: 17914	n:200000
KS ci ratio: 2.246559e-01	ci left: 1.349308e-03	ci right 1.695398e-03	k: 303	n:200000
CKAP2L   200000 perm   53 sec   (3775 perm/sec)   p_kst 1.515000e-03   p_cons 8.957000e-02   p_joint 1.665000e-03

Joint ci ratio: 2.189671e-01	ci left: 1.357014e-03	ci right 1.695080e-03	k: 319	n:210000
Cons ci ratio: 2.729172e-02	ci left: 8.823030e-02	ci right 9.067628e-02	k: 18784	n:210000
KS ci ratio: 2.196557e-01	ci left: 1.348013e-03	ci right 1.685035e-03	k: 317	n:210000
CKAP2L   210000 perm   56 sec   (3727 perm/sec)   p_kst 1.509524e-03   p_cons 8.944762e-02   p_joint 1.519048e-03

Joint ci ratio: 2.224836e-01	ci left: 1.252382e-03	ci right 1.570079e-03	k: 309	n:220000
Cons ci ratio: 2.665720e-02	ci left: 8.830125e-02	ci right 9.069140e-02	k: 19688	n:220000
KS ci ratio: 2.149751e-01	ci left: 1.346912e-03	ci right 1.675537e-03	k: 331	n:220000
CKAP2L   220000 perm   60 sec   (3680 perm/sec)   p_kst 1.504545e-03   p_cons 8.949091e-02   p_joint 1.404545e-03

Joint ci ratio: 2.193251e-01	ci left: 1.234895e-03	ci right 1.543108e-03	k: 318	n:230000
Cons ci ratio: 2.605316e-02	ci left: 8.844010e-02	ci right 9.077895e-02	k: 20609	n:230000
KS ci ratio: 2.118112e-01	ci left: 1.329504e-03	ci right 1.648488e-03	k: 341	n:230000
CKAP2L   230000 perm   63 sec   (3634 perm/sec)   p_kst 1.482609e-03   p_cons 8.960435e-02   p_joint 1.382609e-03

Joint ci ratio: 2.133856e-01	ci left: 1.254379e-03	ci right 1.557867e-03	k: 336	n:240000
Cons ci ratio: 2.553402e-02	ci left: 8.827795e-02	ci right 9.056531e-02	k: 21460	n:240000
KS ci ratio: 2.067345e-01	ci left: 1.341231e-03	ci right 1.654340e-03	k: 358	n:240000
CKAP2L   240000 perm   67 sec   (3590 perm/sec)   p_kst 1.491667e-03   p_cons 8.941667e-02   p_joint 1.400000e-03

Joint ci ratio: 2.341331e-01	ci left: 9.889383e-04	ci right 1.254845e-03	k: 279	n:250000
Cons ci ratio: 2.501887e-02	ci left: 8.829626e-02	ci right 9.053727e-02	k: 22353	n:250000
KS ci ratio: 2.036398e-01	ci left: 1.329320e-03	ci right 1.634425e-03	k: 369	n:250000
CKAP2L   250000 perm   70 sec   (3547 perm/sec)   p_kst 1.476000e-03   p_cons 8.941200e-02   p_joint 1.116000e-03

Joint ci ratio: 2.358305e-01	ci left: 9.364202e-04	ci right 1.190298e-03	k: 275	n:260000
Cons ci ratio: 2.453370e-02	ci left: 8.831359e-02	ci right 9.051096e-02	k: 23246	n:260000
KS ci ratio: 1.996333e-01	ci left: 1.332972e-03	ci right 1.632163e-03	k: 384	n:260000
CKAP2L   260000 perm   74 sec   (3505 perm/sec)   p_kst 1.476923e-03   p_cons 8.940769e-02   p_joint 1.057692e-03

Joint ci ratio: 2.341429e-01	ci left: 9.156794e-04	ci right 1.161900e-03	k: 279	n:270000
Cons ci ratio: 2.408446e-02	ci left: 8.827109e-02	ci right 9.042662e-02	k: 24123	n:270000
KS ci ratio: 1.958544e-01	ci left: 1.336408e-03	ci right 1.630015e-03	k: 399	n:270000
CKAP2L   270000 perm   78 sec   (3464 perm/sec)   p_kst 1.477778e-03   p_cons 8.934444e-02   p_joint 1.033333e-03

Joint ci ratio: 2.296746e-01	ci left: 9.199803e-04	ci right 1.161967e-03	k: 290	n:280000
Cons ci ratio: 2.364969e-02	ci left: 8.829591e-02	ci right 9.041260e-02	k: 25018	n:280000
KS ci ratio: 1.918199e-01	ci left: 1.346448e-03	ci right 1.635457e-03	k: 416	n:280000
CKAP2L   280000 perm   82 sec   (3425 perm/sec)   p_kst 1.485714e-03   p_cons 8.935000e-02   p_joint 1.035714e-03

Joint ci ratio: 2.262038e-01	ci left: 9.175192e-04	ci right 1.154703e-03	k: 299	n:290000
Cons ci ratio: 2.326821e-02	ci left: 8.810668e-02	ci right 9.018430e-02	k: 25851	n:290000
KS ci ratio: 1.888987e-01	ci left: 1.342710e-03	ci right 1.626023e-03	k: 429	n:290000
CKAP2L   290000 perm   86 sec   (3384 perm/sec)   p_kst 1.479310e-03   p_cons 8.914138e-02   p_joint 1.031034e-03

Joint ci ratio: 2.333225e-01	ci left: 8.303834e-04	ci right 1.052772e-03	k: 281	n:300000
Cons ci ratio: 2.288673e-02	ci left: 8.805634e-02	ci right 9.009828e-02	k: 26722	n:300000
KS ci ratio: 1.856876e-01	ci left: 1.345609e-03	ci right 1.624164e-03	k: 444	n:300000
CKAP2L   300000 perm   90 sec   (3345 perm/sec)   p_kst 1.480000e-03   p_cons 8.907333e-02   p_joint 9.366667e-04

Joint ci ratio: 2.292922e-01	ci left: 8.339859e-04	ci right 1.052936e-03	k: 291	n:310000
Cons ci ratio: 2.250239e-02	ci left: 8.816035e-02	ci right 9.016992e-02	k: 27640	n:310000
KS ci ratio: 1.820415e-01	ci left: 1.357595e-03	ci right 1.632504e-03	k: 462	n:310000
CKAP2L   310000 perm   94 sec   (3308 perm/sec)   p_kst 1.490323e-03   p_cons 8.916129e-02   p_joint 9.387097e-04

Joint ci ratio: 2.250911e-01	ci left: 8.403430e-04	ci right 1.056359e-03	k: 302	n:320000
Cons ci ratio: 2.214870e-02	ci left: 8.817106e-02	ci right 9.014889e-02	k: 28530	n:320000
KS ci ratio: 1.801083e-01	ci left: 1.345003e-03	ci right 1.614155e-03	k: 472	n:320000
CKAP2L   320000 perm   98 sec   (3271 perm/sec)   p_kst 1.475000e-03   p_cons 8.915625e-02   p_joint 9.437500e-04

Joint ci ratio: 2.232581e-01	ci left: 8.291783e-04	ci right 1.040350e-03	k: 307	n:330000
Cons ci ratio: 2.180223e-02	ci left: 8.824770e-02	ci right 9.019589e-02	k: 29442	n:330000
KS ci ratio: 1.773185e-01	ci left: 1.347667e-03	ci right 1.612727e-03	k: 487	n:330000
CKAP2L   330000 perm   102 sec   (3234 perm/sec)   p_kst 1.475758e-03   p_cons 8.921818e-02   p_joint 9.303030e-04

Joint ci ratio: 2.211159e-01	ci left: 8.214553e-04	ci right 1.028379e-03	k: 313	n:340000
Cons ci ratio: 2.147308e-02	ci left: 8.830834e-02	ci right 9.022808e-02	k: 30350	n:340000
KS ci ratio: 1.751785e-01	ci left: 1.341766e-03	ci right 1.602143e-03	k: 499	n:340000
CKAP2L   340000 perm   106 sec   (3199 perm/sec)   p_kst 1.467647e-03   p_cons 8.926471e-02   p_joint 9.205882e-04

Joint ci ratio: 2.266023e-01	ci left: 7.575278e-04	ci right 9.537453e-04	k: 298	n:350000
Cons ci ratio: 2.116212e-02	ci left: 8.833730e-02	ci right 9.022951e-02	k: 31248	n:350000
KS ci ratio: 1.727765e-01	ci left: 1.341688e-03	ci right 1.598108e-03	k: 513	n:350000
CKAP2L   350000 perm   111 sec   (3165 perm/sec)   p_kst 1.465714e-03   p_cons 8.928000e-02   p_joint 8.514286e-04

Joint ci ratio: 2.247322e-01	ci left: 7.495888e-04	ci right 9.419256e-04	k: 303	n:360000
Cons ci ratio: 2.087856e-02	ci left: 8.825424e-02	ci right 9.011904e-02	k: 32106	n:360000
KS ci ratio: 1.709578e-01	ci left: 1.333660e-03	ci right 1.585586e-03	k: 524	n:360000
CKAP2L   360000 perm   115 sec   (3132 perm/sec)   p_kst 1.455556e-03   p_cons 8.918333e-02   p_joint 8.416667e-04

Joint ci ratio: 2.221891e-01	ci left: 7.471895e-04	ci right 9.364444e-04	k: 310	n:370000
Cons ci ratio: 2.057972e-02	ci left: 8.838298e-02	ci right 9.022345e-02	k: 33041	n:370000
KS ci ratio: 1.687231e-01	ci left: 1.333844e-03	ci right 1.582177e-03	k: 538	n:370000
CKAP2L   370000 perm   119 sec   (3100 perm/sec)   p_kst 1.454054e-03   p_cons 8.930000e-02   p_joint 8.378378e-04

Joint ci ratio: 2.190421e-01	ci left: 7.499023e-04	ci right 9.367918e-04	k: 319	n:380000
Cons ci ratio: 2.031437e-02	ci left: 8.833748e-02	ci right 9.015300e-02	k: 33912	n:380000
KS ci ratio: 1.665738e-01	ci left: 1.334040e-03	ci right 1.578927e-03	k: 552	n:380000
CKAP2L   380000 perm   124 sec   (3068 perm/sec)   p_kst 1.452632e-03   p_cons 8.924211e-02   p_joint 8.394737e-04

Joint ci ratio: 2.166853e-01	ci left: 7.476433e-04	ci right 9.316983e-04	k: 326	n:390000
Cons ci ratio: 2.004764e-02	ci left: 8.838634e-02	ci right 9.017874e-02	k: 34819	n:390000
KS ci ratio: 1.649422e-01	ci left: 1.326868e-03	ci right 1.567816e-03	k: 563	n:390000
CKAP2L   390000 perm   128 sec   (3039 perm/sec)   p_kst 1.443590e-03   p_cons 8.927949e-02   p_joint 8.358974e-04

Joint ci ratio: 1.551921e-01	ci left: 1.468901e-03	ci right 1.718408e-03	k: 636	n:400000
Cons ci ratio: 1.980179e-02	ci left: 8.834580e-02	ci right 9.011516e-02	k: 35691	n:400000
KS ci ratio: 1.639296e-01	ci left: 1.310475e-03	ci right 1.546842e-03	k: 570	n:400000
CKAP2L   400000 perm   133 sec   (3008 perm/sec)   p_kst 1.425000e-03   p_cons 8.922750e-02   p_joint 1.590000e-03

Joint ci ratio: 2.187071e-01	ci left: 6.973346e-04	ci right 8.708216e-04	k: 320	n:410000
Cons ci ratio: 1.955304e-02	ci left: 8.840449e-02	ci right 9.015254e-02	k: 36603	n:410000
KS ci ratio: 1.688921e-01	ci left: 1.201370e-03	ci right 1.425285e-03	k: 537	n:410000
CKAP2L   410000 perm   138 sec   (2978 perm/sec)   p_kst 1.309756e-03   p_cons 8.927561e-02   p_joint 7.804878e-04

Joint ci ratio: 2.176935e-01	ci left: 6.874835e-04	ci right 8.576209e-04	k: 323	n:420000
Cons ci ratio: 1.931767e-02	ci left: 8.842497e-02	ci right 9.015213e-02	k: 37500	n:420000
KS ci ratio: 1.678052e-01	ci left: 1.188730e-03	ci right 1.408719e-03	k: 544	n:420000
CKAP2L   420000 perm   142 sec   (2948 perm/sec)   p_kst 1.295238e-03   p_cons 8.928571e-02   p_joint 7.690476e-04

Joint ci ratio: 2.163630e-01	ci left: 6.802919e-04	ci right 8.474838e-04	k: 327	n:430000
Cons ci ratio: 1.908787e-02	ci left: 8.846776e-02	ci right 9.017499e-02	k: 38407	n:430000
KS ci ratio: 1.655421e-01	ci left: 1.194514e-03	ci right 1.412295e-03	k: 559	n:430000
CKAP2L   430000 perm   147 sec   (2919 perm/sec)   p_kst 1.300000e-03   p_cons 8.931860e-02   p_joint 7.604651e-04

Joint ci ratio: 2.128229e-01	ci left: 6.884876e-04	ci right 8.545639e-04	k: 338	n:440000
Cons ci ratio: 1.887056e-02	ci left: 8.847026e-02	ci right 9.015788e-02	k: 39297	n:440000
KS ci ratio: 1.635107e-01	ci left: 1.197874e-03	ci right 1.413324e-03	k: 573	n:440000
CKAP2L   440000 perm   152 sec   (2891 perm/sec)   p_kst 1.302273e-03   p_cons 8.931136e-02   p_joint 7.681818e-04

Joint ci ratio: 2.100526e-01	ci left: 6.921290e-04	ci right 8.566309e-04	k: 347	n:450000
Cons ci ratio: 1.866281e-02	ci left: 8.845283e-02	ci right 9.012135e-02	k: 40178	n:450000
KS ci ratio: 1.619665e-01	ci left: 1.194704e-03	ci right 1.407356e-03	k: 584	n:450000
CKAP2L   450000 perm   157 sec   (2863 perm/sec)   p_kst 1.297778e-03   p_cons 8.928444e-02   p_joint 7.711111e-04

Joint ci ratio: 2.076789e-01	ci left: 6.935645e-04	ci right 8.563081e-04	k: 355	n:460000
Cons ci ratio: 1.845930e-02	ci left: 8.845791e-02	ci right 9.010813e-02	k: 41069	n:460000
KS ci ratio: 1.597955e-01	ci left: 1.202114e-03	ci right 1.412943e-03	k: 600	n:460000
CKAP2L   460000 perm   162 sec   (2835 perm/sec)   p_kst 1.304348e-03   p_cons 8.928043e-02   p_joint 7.717391e-04

Joint ci ratio: 2.073894e-01	ci left: 6.808244e-04	ci right 8.403275e-04	k: 356	n:470000
Cons ci ratio: 1.828073e-02	ci left: 8.829972e-02	ci right 8.993088e-02	k: 41883	n:470000
KS ci ratio: 1.583532e-01	ci left: 1.199010e-03	ci right 1.407216e-03	k: 611	n:470000
CKAP2L   470000 perm   167 sec   (2806 perm/sec)   p_kst 1.300000e-03   p_cons 8.911277e-02   p_joint 7.574468e-04

Joint ci ratio: 2.071009e-01	ci left: 6.686153e-04	ci right 8.250126e-04	k: 357	n:480000
Cons ci ratio: 1.808632e-02	ci left: 8.833492e-02	ci right 8.994921e-02	k: 42787	n:480000
KS ci ratio: 1.570756e-01	ci left: 1.194041e-03	ci right 1.399554e-03	k: 621	n:480000
CKAP2L   480000 perm   173 sec   (2779 perm/sec)   p_kst 1.293750e-03   p_cons 8.913958e-02   p_joint 7.437500e-04

Joint ci ratio: 2.088614e-01	ci left: 6.433620e-04	ci right 7.952951e-04	k: 351	n:490000
Cons ci ratio: 1.789438e-02	ci left: 8.840130e-02	ci right 8.999948e-02	k: 43707	n:490000
KS ci ratio: 1.553370e-01	ci left: 1.197128e-03	ci right 1.400679e-03	k: 635	n:490000
CKAP2L   490000 perm   178 sec   (2752 perm/sec)   p_kst 1.295918e-03   p_cons 8.919796e-02   p_joint 7.163265e-04

Joint ci ratio: 2.197526e-01	ci left: 5.661395e-04	ci right 7.077508e-04	k: 317	n:500000
Cons ci ratio: 1.771563e-02	ci left: 8.839938e-02	ci right 8.998139e-02	k: 44594	n:500000
KS ci ratio: 1.542501e-01	ci left: 1.190488e-03	ci right 1.391362e-03	k: 644	n:500000
CKAP2L   500000 perm   183 sec   (2727 perm/sec)   p_kst 1.288000e-03   p_cons 8.918800e-02   p_joint 6.340000e-04

Joint ci ratio: 2.160467e-01	ci left: 5.754306e-04	ci right 7.166168e-04	k: 328	n:510000
Cons ci ratio: 1.754022e-02	ci left: 8.841518e-02	ci right 8.998165e-02	k: 45490	n:510000
KS ci ratio: 1.527187e-01	ci left: 1.191656e-03	ci right 1.390549e-03	k: 657	n:510000
CKAP2L   510000 perm   189 sec   (2702 perm/sec)   p_kst 1.288235e-03   p_cons 8.919608e-02   p_joint 6.431373e-04

Joint ci ratio: 2.147457e-01	ci left: 5.716419e-04	ci right 7.109425e-04	k: 332	n:520000
Cons ci ratio: 1.738123e-02	ci left: 8.832509e-02	ci right 8.987564e-02	k: 46331	n:520000
KS ci ratio: 1.517995e-01	ci left: 1.183538e-03	ci right 1.379779e-03	k: 665	n:520000
CKAP2L   520000 perm   194 sec   (2677 perm/sec)   p_kst 1.278846e-03   p_cons 8.909808e-02   p_joint 6.384615e-04

Joint ci ratio: 2.134679e-01	ci left: 5.679986e-04	ci right 7.054799e-04	k: 336	n:530000
Cons ci ratio: 1.721308e-02	ci left: 8.836439e-02	ci right 8.990048e-02	k: 47239	n:530000
KS ci ratio: 1.506729e-01	ci left: 1.179361e-03	ci right 1.373327e-03	k: 675	n:530000
CKAP2L   530000 perm   200 sec   (2653 perm/sec)   p_kst 1.273585e-03   p_cons 8.913019e-02   p_joint 6.339623e-04

Joint ci ratio: 2.125247e-01	ci left: 5.627391e-04	ci right 6.982672e-04	k: 339	n:540000
Cons ci ratio: 1.705710e-02	ci left: 8.833221e-02	ci right 8.985368e-02	k: 48109	n:540000
KS ci ratio: 1.485982e-01	ci left: 1.191389e-03	ci right 1.384396e-03	k: 694	n:540000
CKAP2L   540000 perm   205 sec   (2630 perm/sec)   p_kst 1.285185e-03   p_cons 8.909074e-02   p_joint 6.277778e-04

Joint ci ratio: 2.094659e-01	ci left: 5.697289e-04	ci right 7.047122e-04	k: 349	n:550000
Cons ci ratio: 1.689961e-02	ci left: 8.835560e-02	ci right 8.986328e-02	k: 49009	n:550000
KS ci ratio: 1.467098e-01	ci left: 1.201246e-03	ci right 1.393160e-03	k: 712	n:550000
CKAP2L   550000 perm   211 sec   (2606 perm/sec)   p_kst 1.294545e-03   p_cons 8.910727e-02   p_joint 6.345455e-04

Joint ci ratio: 2.074021e-01	ci left: 5.714028e-04	ci right 7.052796e-04	k: 356	n:560000
Cons ci ratio: 1.674695e-02	ci left: 8.837287e-02	ci right 8.986710e-02	k: 49906	n:560000
KS ci ratio: 1.452902e-01	ci left: 1.203882e-03	ci right 1.394194e-03	k: 726	n:560000
CKAP2L   560000 perm   217 sec   (2582 perm/sec)   p_kst 1.296429e-03   p_cons 8.911786e-02   p_joint 6.357143e-04

Joint ci ratio: 2.053980e-01	ci left: 5.730242e-04	ci right 7.058207e-04	k: 363	n:570000
Cons ci ratio: 1.660320e-02	ci left: 8.834241e-02	ci right 8.982318e-02	k: 50776	n:570000
KS ci ratio: 1.437170e-01	ci left: 1.209817e-03	ci right 1.398819e-03	k: 742	n:570000
CKAP2L   570000 perm   223 sec   (2560 perm/sec)   p_kst 1.301754e-03   p_cons 8.908070e-02   p_joint 6.368421e-04

Joint ci ratio: 2.045574e-01	ci left: 5.680513e-04	ci right 6.990891e-04	k: 366	n:580000
Cons ci ratio: 1.644981e-02	ci left: 8.844360e-02	ci right 8.991224e-02	k: 51722	n:580000
KS ci ratio: 1.427599e-01	ci left: 1.205581e-03	ci right 1.392560e-03	k: 752	n:580000
CKAP2L   580000 perm   228 sec   (2538 perm/sec)   p_kst 1.296552e-03   p_cons 8.917586e-02   p_joint 6.310345e-04

Joint ci ratio: 1.533164e-01	ci left: 1.021919e-03	ci right 1.193210e-03	k: 652	n:590000
Cons ci ratio: 1.631096e-02	ci left: 8.843840e-02	ci right 8.989445e-02	k: 52607	n:590000
KS ci ratio: 1.410830e-01	ci left: 1.214573e-03	ci right 1.400548e-03	k: 770	n:590000
CKAP2L   590000 perm   234 sec   (2516 perm/sec)   p_kst 1.305085e-03   p_cons 8.916441e-02   p_joint 1.105085e-03

Joint ci ratio: 1.546271e-01	ci left: 9.872584e-04	ci right 1.154286e-03	k: 641	n:600000
Cons ci ratio: 1.617441e-02	ci left: 8.844506e-02	ci right 8.988891e-02	k: 53499	n:600000
KS ci ratio: 1.404475e-01	ci left: 1.205586e-03	ci right 1.389284e-03	k: 777	n:600000
CKAP2L   600000 perm   240 sec   (2496 perm/sec)   p_kst 1.295000e-03   p_cons 8.916500e-02   p_joint 1.068333e-03

Joint ci ratio: 1.528513e-01	ci left: 9.947183e-04	ci right 1.160898e-03	k: 656	n:610000
Cons ci ratio: 1.603945e-02	ci left: 8.846952e-02	ci right 8.990160e-02	k: 54402	n:610000
KS ci ratio: 1.393769e-01	ci left: 1.204806e-03	ci right 1.386869e-03	k: 789	n:610000
CKAP2L   610000 perm   247 sec   (2475 perm/sec)   p_kst 1.293443e-03   p_cons 8.918361e-02   p_joint 1.075410e-03

Joint ci ratio: 1.522736e-01	ci left: 9.864308e-04	ci right 1.150547e-03	k: 661	n:620000
Cons ci ratio: 1.590623e-02	ci left: 8.850930e-02	ci right 8.993002e-02	k: 55315	n:620000
KS ci ratio: 1.383303e-01	ci left: 1.204056e-03	ci right 1.384527e-03	k: 801	n:620000
CKAP2L   620000 perm   253 sec   (2454 perm/sec)   p_kst 1.291935e-03   p_cons 8.921774e-02   p_joint 1.066129e-03

Joint ci ratio: 1.511365e-01	ci left: 9.860437e-04	ci right 1.148759e-03	k: 671	n:630000
Cons ci ratio: 1.577566e-02	ci left: 8.855420e-02	ci right 8.996387e-02	k: 56232	n:630000
KS ci ratio: 1.373916e-01	ci left: 1.201802e-03	ci right 1.380612e-03	k: 812	n:630000
CKAP2L   630000 perm   259 sec   (2434 perm/sec)   p_kst 1.288889e-03   p_cons 8.925714e-02   p_joint 1.065079e-03

Joint ci ratio: 1.213967e-01	ci left: 1.527800e-03	ci right 1.726754e-03	k: 1040	n:640000
Cons ci ratio: 1.515858e-02	ci left: 9.388716e-02	ci right 9.532276e-02	k: 60546	n:640000
KS ci ratio: 1.364716e-01	ci left: 1.199622e-03	ci right 1.376816e-03	k: 823	n:640000
CKAP2L   640000 perm   265 sec   (2414 perm/sec)   p_kst 1.285937e-03   p_cons 9.460312e-02   p_joint 1.625000e-03

Joint ci ratio: 1.205887e-01	ci left: 1.525182e-03	ci right 1.722379e-03	k: 1054	n:650000
Cons ci ratio: 1.504640e-02	ci left: 9.383744e-02	ci right 9.526156e-02	k: 61456	n:650000
KS ci ratio: 1.354077e-01	ci left: 1.200486e-03	ci right 1.376314e-03	k: 836	n:650000
CKAP2L   650000 perm   271 sec   (2395 perm/sec)   p_kst 1.286154e-03   p_cons 9.454769e-02   p_joint 1.621538e-03

Joint ci ratio: 1.199091e-01	ci left: 1.519708e-03	ci right 1.715011e-03	k: 1066	n:660000
Cons ci ratio: 1.493336e-02	ci left: 9.382701e-02	ci right 9.524019e-02	k: 62391	n:660000
KS ci ratio: 1.342891e-01	ci left: 1.202794e-03	ci right 1.377388e-03	k: 850	n:660000
CKAP2L   660000 perm   278 sec   (2376 perm/sec)   p_kst 1.287879e-03   p_cons 9.453182e-02   p_joint 1.615152e-03

Joint ci ratio: 1.188553e-01	ci left: 1.524538e-03	ci right 1.718618e-03	k: 1085	n:670000
Cons ci ratio: 1.482658e-02	ci left: 9.377379e-02	ci right 9.517599e-02	k: 63297	n:670000
KS ci ratio: 1.324335e-01	ci left: 1.219468e-03	ci right 1.393845e-03	k: 874	n:670000
CKAP2L   670000 perm   284 sec   (2356 perm/sec)   p_kst 1.304478e-03   p_cons 9.447313e-02   p_joint 1.619403e-03

Joint ci ratio: 1.183665e-01	ci left: 1.514960e-03	ci right 1.706973e-03	k: 1094	n:680000
Cons ci ratio: 1.471346e-02	ci left: 9.382185e-02	ci right 9.521396e-02	k: 64271	n:680000
KS ci ratio: 1.314606e-01	ci left: 1.220021e-03	ci right 1.393095e-03	k: 887	n:680000
CKAP2L   680000 perm   291 sec   (2337 perm/sec)   p_kst 1.304412e-03   p_cons 9.451618e-02   p_joint 1.608824e-03

Joint ci ratio: 1.176703e-01	ci left: 1.511288e-03	ci right 1.701631e-03	k: 1107	n:690000
Cons ci ratio: 1.460982e-02	ci left: 9.378765e-02	ci right 9.516938e-02	k: 65189	n:690000
KS ci ratio: 1.303640e-01	ci left: 1.223367e-03	ci right 1.395356e-03	k: 902	n:690000
CKAP2L   690000 perm   298 sec   (2319 perm/sec)   p_kst 1.307246e-03   p_cons 9.447681e-02   p_joint 1.604348e-03

Joint ci ratio: 1.183692e-01	ci left: 1.471673e-03	ci right 1.658205e-03	k: 1094	n:700000
Cons ci ratio: 1.450663e-02	ci left: 9.377440e-02	ci right 9.514610e-02	k: 66121	n:700000
KS ci ratio: 1.295773e-01	ci left: 1.221094e-03	ci right 1.391648e-03	k: 913	n:700000
CKAP2L   700000 perm   304 sec   (2301 perm/sec)   p_kst 1.304286e-03   p_cons 9.445857e-02   p_joint 1.562857e-03

Joint ci ratio: 1.181008e-01	ci left: 1.457779e-03	ci right 1.642101e-03	k: 1099	n:710000
Cons ci ratio: 1.440845e-02	ci left: 9.372787e-02	ci right 9.508953e-02	k: 67029	n:710000
KS ci ratio: 1.285961e-01	ci left: 1.222977e-03	ci right 1.392402e-03	k: 927	n:710000
CKAP2L   710000 perm   311 sec   (2283 perm/sec)   p_kst 1.305634e-03   p_cons 9.440704e-02   p_joint 1.547887e-03

Joint ci ratio: 1.064703e-01	ci left: 1.779093e-03	ci right 1.980504e-03	k: 1352	n:720000
Cons ci ratio: 1.430492e-02	ci left: 9.376988e-02	ci right 9.512227e-02	k: 68000	n:720000
KS ci ratio: 1.278408e-01	ci left: 1.220779e-03	ci right 1.388830e-03	k: 938	n:720000
CKAP2L   720000 perm   318 sec   (2265 perm/sec)   p_kst 1.302778e-03   p_cons 9.444444e-02   p_joint 1.877778e-03

Joint ci ratio: 1.059240e-01	ci left: 1.773391e-03	ci right 1.973061e-03	k: 1366	n:730000
Cons ci ratio: 1.420984e-02	ci left: 9.373567e-02	ci right 9.507851e-02	k: 68916	n:730000
KS ci ratio: 1.266987e-01	ci left: 1.226602e-03	ci right 1.393834e-03	k: 955	n:730000
CKAP2L   730000 perm   325 sec   (2248 perm/sec)   p_kst 1.308219e-03   p_cons 9.440548e-02   p_joint 1.871233e-03

Joint ci ratio: 1.055393e-01	ci left: 1.762581e-03	ci right 1.960270e-03	k: 1376	n:740000
Cons ci ratio: 1.412021e-02	ci left: 9.365930e-02	ci right 9.499252e-02	k: 69800	n:740000
KS ci ratio: 1.261069e-01	ci left: 1.221804e-03	ci right 1.387545e-03	k: 964	n:740000
CKAP2L   740000 perm   332 sec   (2231 perm/sec)   p_kst 1.302703e-03   p_cons 9.432432e-02   p_joint 1.859459e-03

Joint ci ratio: 1.045563e-01	ci left: 1.772837e-03	ci right 1.969709e-03	k: 1402	n:750000
Cons ci ratio: 1.402502e-02	ci left: 9.367273e-02	ci right 9.499707e-02	k: 70750	n:750000
KS ci ratio: 1.252019e-01	ci left: 1.223593e-03	ci right 1.388297e-03	k: 978	n:750000
CKAP2L   750000 perm   339 sec   (2214 perm/sec)   p_kst 1.304000e-03   p_cons 9.433333e-02   p_joint 1.869333e-03

Joint ci ratio: 9.162480e-02	ci left: 2.292520e-03	ci right 2.513932e-03	k: 1825	n:760000
Cons ci ratio: 1.393441e-02	ci left: 9.365303e-02	ci right 9.496848e-02	k: 71675	n:760000
KS ci ratio: 1.242534e-01	ci left: 1.226615e-03	ci right 1.390382e-03	k: 993	n:760000
CKAP2L   760000 perm   346 sec   (2197 perm/sec)   p_kst 1.306579e-03   p_cons 9.430921e-02   p_joint 2.401316e-03

Joint ci ratio: 9.102854e-02	ci left: 2.293204e-03	ci right 2.513164e-03	k: 1849	n:770000
Cons ci ratio: 1.384122e-02	ci left: 9.368696e-02	ci right 9.499401e-02	k: 72641	n:770000
KS ci ratio: 1.237568e-01	ci left: 1.220752e-03	ci right 1.383037e-03	k: 1001	n:770000
CKAP2L   770000 perm   353 sec   (2180 perm/sec)   p_kst 1.300000e-03   p_cons 9.433896e-02   p_joint 2.401299e-03

Joint ci ratio: 9.115350e-02	ci left: 2.257538e-03	ci right 2.474389e-03	k: 1844	n:780000
Cons ci ratio: 1.375298e-02	ci left: 9.368170e-02	ci right 9.498028e-02	k: 73577	n:780000
KS ci ratio: 1.227199e-01	ci left: 1.226224e-03	ci right 1.387772e-03	k: 1018	n:780000
CKAP2L   780000 perm   360 sec   (2164 perm/sec)   p_kst 1.305128e-03   p_cons 9.432949e-02   p_joint 2.364103e-03

Joint ci ratio: 9.061495e-02	ci left: 2.256177e-03	ci right 2.471549e-03	k: 1866	n:790000
Cons ci ratio: 1.366255e-02	ci left: 9.372456e-02	ci right 9.501512e-02	k: 74551	n:790000
KS ci ratio: 1.220630e-01	ci left: 1.224200e-03	ci right 1.384556e-03	k: 1029	n:790000
CKAP2L   790000 perm   368 sec   (2148 perm/sec)   p_kst 1.302532e-03   p_cons 9.436835e-02   p_joint 2.362025e-03

Joint ci ratio: 1.268389e-01	ci left: 1.116850e-03	ci right 1.269299e-03	k: 953	n:800000
Cons ci ratio: 1.402054e-02	ci left: 8.839061e-02	ci right 8.963987e-02	k: 71211	n:800000
KS ci ratio: 1.211836e-01	ci left: 1.227077e-03	ci right 1.386569e-03	k: 1044	n:800000
CKAP2L   800000 perm   375 sec   (2132 perm/sec)   p_kst 1.305000e-03   p_cons 8.901375e-02   p_joint 1.191250e-03

Joint ci ratio: 1.259182e-01	ci left: 1.119799e-03	ci right 1.271458e-03	k: 967	n:810000
Cons ci ratio: 1.393937e-02	ci left: 8.832907e-02	ci right 8.957017e-02	k: 72048	n:810000
KS ci ratio: 1.204938e-01	ci left: 1.226295e-03	ci right 1.384713e-03	k: 1056	n:810000
CKAP2L   810000 perm   383 sec   (2117 perm/sec)   p_kst 1.303704e-03   p_cons 8.894815e-02   p_joint 1.193827e-03

Joint ci ratio: 1.252729e-01	ci left: 1.117955e-03	ci right 1.268531e-03	k: 977	n:820000
Cons ci ratio: 1.385813e-02	ci left: 8.828607e-02	ci right 8.951928e-02	k: 72899	n:820000
KS ci ratio: 1.198718e-01	ci left: 1.224351e-03	ci right 1.381644e-03	k: 1067	n:820000
CKAP2L   820000 perm   390 sec   (2101 perm/sec)   p_kst 1.301220e-03   p_cons 8.890122e-02   p_joint 1.191463e-03

Joint ci ratio: 1.254023e-01	ci left: 1.102151e-03	ci right 1.250763e-03	k: 975	n:830000
Cons ci ratio: 1.377450e-02	ci left: 8.828856e-02	ci right 8.951431e-02	k: 73787	n:830000
KS ci ratio: 1.191489e-01	ci left: 1.224795e-03	ci right 1.381129e-03	k: 1080	n:830000
CKAP2L   830000 perm   398 sec   (2086 perm/sec)   p_kst 1.301205e-03   p_cons 8.890000e-02   p_joint 1.174699e-03

Joint ci ratio: 1.242612e-01	ci left: 1.109790e-03	ci right 1.257970e-03	k: 993	n:840000
Cons ci ratio: 1.369337e-02	ci left: 8.827915e-02	ci right 8.949749e-02	k: 74665	n:840000
KS ci ratio: 1.180612e-01	ci left: 1.233317e-03	ci right 1.389202e-03	k: 1100	n:840000
CKAP2L   840000 perm   406 sec   (2071 perm/sec)   p_kst 1.309524e-03   p_cons 8.888690e-02   p_joint 1.182143e-03

Joint ci ratio: 1.235178e-01	ci left: 1.110414e-03	ci right 1.257725e-03	k: 1005	n:850000
Cons ci ratio: 1.360862e-02	ci left: 8.832980e-02	ci right 8.954124e-02	k: 75594	n:850000
KS ci ratio: 1.174760e-01	ci left: 1.231368e-03	ci right 1.386181e-03	k: 1111	n:850000
CKAP2L   850000 perm   413 sec   (2058 perm/sec)   p_kst 1.307059e-03   p_cons 8.893412e-02   p_joint 1.182353e-03

Joint ci ratio: 1.238891e-01	ci left: 1.090740e-03	ci right 1.235909e-03	k: 999	n:860000
Cons ci ratio: 1.353095e-02	ci left: 8.831322e-02	ci right 8.951746e-02	k: 76466	n:860000
KS ci ratio: 1.165363e-01	ci left: 1.237367e-03	ci right 1.391605e-03	k: 1129	n:860000
CKAP2L   860000 perm   421 sec   (2044 perm/sec)   p_kst 1.312791e-03   p_cons 8.891395e-02   p_joint 1.161628e-03

Joint ci ratio: 1.257285e-01	ci left: 1.045909e-03	ci right 1.187331e-03	k: 970	n:870000
Cons ci ratio: 1.345278e-02	ci left: 8.831881e-02	ci right 8.951611e-02	k: 77357	n:870000
KS ci ratio: 1.158717e-01	ci left: 1.237653e-03	ci right 1.390986e-03	k: 1142	n:870000
CKAP2L   870000 perm   429 sec   (2030 perm/sec)   p_kst 1.312644e-03   p_cons 8.891609e-02   p_joint 1.114943e-03

Joint ci ratio: 1.202157e-01	ci left: 1.134256e-03	ci right 1.280422e-03	k: 1061	n:880000
Cons ci ratio: 1.337746e-02	ci left: 8.830616e-02	ci right 8.949654e-02	k: 78232	n:880000
KS ci ratio: 1.102230e-01	ci left: 1.356103e-03	ci right 1.515389e-03	k: 1262	n:880000
CKAP2L   880000 perm   436 sec   (2016 perm/sec)   p_kst 1.434091e-03   p_cons 8.890000e-02   p_joint 1.205682e-03

Joint ci ratio: 1.197658e-01	ci left: 1.130231e-03	ci right 1.275294e-03	k: 1069	n:890000
Cons ci ratio: 1.330025e-02	ci left: 8.833191e-02	ci right 8.951571e-02	k: 79141	n:890000
KS ci ratio: 1.097895e-01	ci left: 1.351793e-03	ci right 1.509908e-03	k: 1272	n:890000
CKAP2L   890000 perm   444 sec   (2003 perm/sec)   p_kst 1.429213e-03   p_cons 8.892247e-02   p_joint 1.201124e-03

Joint ci ratio: 1.198226e-01	ci left: 1.116594e-03	ci right 1.259980e-03	k: 1068	n:900000
Cons ci ratio: 1.322853e-02	ci left: 8.830614e-02	ci right 8.948317e-02	k: 80004	n:900000
KS ci ratio: 1.092758e-01	ci left: 1.349741e-03	ci right 1.506829e-03	k: 1284	n:900000
CKAP2L   900000 perm   452 sec   (1990 perm/sec)   p_kst 1.426667e-03   p_cons 8.889333e-02   p_joint 1.186667e-03

Joint ci ratio: 1.189356e-01	ci left: 1.121382e-03	ci right 1.264241e-03	k: 1084	n:910000
Cons ci ratio: 1.316011e-02	ci left: 8.825467e-02	ci right 8.942488e-02	k: 80843	n:910000
KS ci ratio: 1.084349e-01	ci left: 1.356288e-03	ci right 1.512847e-03	k: 1304	n:910000
CKAP2L   910000 perm   460 sec   (1977 perm/sec)   p_kst 1.432967e-03   p_cons 8.883846e-02   p_joint 1.191209e-03

Joint ci ratio: 1.192670e-01	ci left: 1.102865e-03	ci right 1.243785e-03	k: 1078	n:920000
Cons ci ratio: 1.308623e-02	ci left: 8.828452e-02	ci right 8.944850e-02	k: 81756	n:920000
KS ci ratio: 1.079399e-01	ci left: 1.354237e-03	ci right 1.509799e-03	k: 1316	n:920000
CKAP2L   920000 perm   469 sec   (1963 perm/sec)   p_kst 1.430435e-03   p_cons 8.886522e-02   p_joint 1.171739e-03

Joint ci ratio: 1.198249e-01	ci left: 1.080574e-03	ci right 1.219337e-03	k: 1068	n:930000
Cons ci ratio: 1.302032e-02	ci left: 8.823013e-02	ci right 8.938749e-02	k: 82591	n:930000
KS ci ratio: 1.072497e-01	ci left: 1.357463e-03	ci right 1.512336e-03	k: 1333	n:930000
CKAP2L   930000 perm   477 sec   (1950 perm/sec)   p_kst 1.433333e-03   p_cons 8.880753e-02   p_joint 1.148387e-03

Joint ci ratio: 1.206763e-01	ci left: 1.053600e-03	ci right 1.189929e-03	k: 1053	n:940000
Cons ci ratio: 1.295361e-02	ci left: 8.819918e-02	ci right 8.935017e-02	k: 83447	n:940000
KS ci ratio: 1.067707e-01	ci left: 1.355446e-03	ci right 1.509355e-03	k: 1345	n:940000
CKAP2L   940000 perm   485 sec   (1938 perm/sec)   p_kst 1.430851e-03   p_cons 8.877340e-02   p_joint 1.120213e-03

Joint ci ratio: 1.205054e-01	ci left: 1.045572e-03	ci right 1.180657e-03	k: 1056	n:950000
Cons ci ratio: 1.288515e-02	ci left: 8.820353e-02	ci right 8.934845e-02	k: 84336	n:950000
KS ci ratio: 1.063373e-01	ci left: 1.352448e-03	ci right 1.505354e-03	k: 1356	n:950000
CKAP2L   950000 perm   493 sec   (1925 perm/sec)   p_kst 1.427368e-03   p_cons 8.877474e-02   p_joint 1.111579e-03

Joint ci ratio: 1.201652e-01	ci left: 1.040742e-03	ci right 1.174797e-03	k: 1062	n:960000
Cons ci ratio: 1.281842e-02	ci left: 8.819950e-02	ci right 8.933839e-02	k: 85217	n:960000
KS ci ratio: 1.059091e-01	ci left: 1.349514e-03	ci right 1.501436e-03	k: 1367	n:960000
CKAP2L   960000 perm   502 sec   (1913 perm/sec)   p_kst 1.423958e-03   p_cons 8.876771e-02   p_joint 1.106250e-03

Joint ci ratio: 1.197157e-01	ci left: 1.038013e-03	ci right 1.171181e-03	k: 1070	n:970000
Cons ci ratio: 1.275475e-02	ci left: 8.816987e-02	ci right 8.930269e-02	k: 86073	n:970000
KS ci ratio: 1.053331e-01	ci left: 1.350657e-03	ci right 1.501830e-03	k: 1382	n:970000
CKAP2L   970000 perm   510 sec   (1900 perm/sec)   p_kst 1.424742e-03   p_cons 8.873505e-02   p_joint 1.103093e-03

Joint ci ratio: 1.191056e-01	ci left: 1.038310e-03	ci right 1.170789e-03	k: 1081	n:980000
Cons ci ratio: 1.268978e-02	ci left: 8.816935e-02	ci right 8.929634e-02	k: 86957	n:980000
KS ci ratio: 1.047290e-01	ci left: 1.352773e-03	ci right 1.503260e-03	k: 1398	n:980000
CKAP2L   980000 perm   519 sec   (1888 perm/sec)   p_kst 1.426531e-03   p_cons 8.873163e-02   p_joint 1.103061e-03

Joint ci ratio: 1.186679e-01	ci left: 1.035663e-03	ci right 1.167284e-03	k: 1089	n:990000
Cons ci ratio: 1.262705e-02	ci left: 8.815274e-02	ci right 8.927391e-02	k: 87825	n:990000
KS ci ratio: 1.042089e-01	ci left: 1.352880e-03	ci right 1.502586e-03	k: 1412	n:990000
CKAP2L   990000 perm   527 sec   (1877 perm/sec)   p_kst 1.426263e-03   p_cons 8.871212e-02   p_joint 1.100000e-03

Joint ci ratio: 1.192173e-01	ci left: 1.015603e-03	ci right 1.145315e-03	k: 1079	n:1000000
Cons ci ratio: 1.256835e-02	ci left: 8.809659e-02	ci right 8.921180e-02	k: 88653	n:1000000
KS ci ratio: 1.039154e-01	ci left: 1.347143e-03	ci right 1.495769e-03	k: 1420	n:1000000
CKAP2L   1000000 perm   536 sec   (1865 perm/sec)   p_kst 1.420000e-03   p_cons 8.865300e-02   p_joint 1.079000e-03

Joint ci ratio: 1.196624e-01	ci left: 9.978627e-04	ci right 1.125818e-03	k: 1071	n:1010000
Cons ci ratio: 1.250610e-02	ci left: 8.809783e-02	ci right 8.920750e-02	k: 89538	n:1010000
KS ci ratio: 1.035882e-01	ci left: 1.342484e-03	ci right 1.490102e-03	k: 1429	n:1010000
CKAP2L   1010000 perm   545 sec   (1853 perm/sec)   p_kst 1.414851e-03   p_cons 8.865149e-02   p_joint 1.060396e-03

Joint ci ratio: 1.189433e-01	ci left: 1.000445e-03	ci right 1.127906e-03	k: 1084	n:1020000
Cons ci ratio: 1.244257e-02	ci left: 8.812742e-02	ci right 8.923178e-02	k: 90452	n:1020000
KS ci ratio: 1.029065e-01	ci left: 1.347469e-03	ci right 1.494601e-03	k: 1448	n:1020000
CKAP2L   1020000 perm   554 sec   (1842 perm/sec)   p_kst 1.419608e-03   p_cons 8.867843e-02   p_joint 1.062745e-03

Joint ci ratio: 1.181830e-01	ci left: 1.003921e-03	ci right 1.130951e-03	k: 1098	n:1030000
Cons ci ratio: 1.238677e-02	ci left: 8.806835e-02	ci right 8.916698e-02	k: 91275	n:1030000
KS ci ratio: 1.023780e-01	ci left: 1.348577e-03	ci right 1.495027e-03	k: 1463	n:1030000
CKAP2L   1030000 perm   563 sec   (1830 perm/sec)   p_kst 1.420388e-03   p_cons 8.861650e-02   p_joint 1.066019e-03

Joint ci ratio: 1.175430e-01	ci left: 1.005466e-03	ci right 1.131955e-03	k: 1110	n:1040000
Cons ci ratio: 1.232833e-02	ci left: 8.805453e-02	ci right 8.914777e-02	k: 92144	n:1040000
KS ci ratio: 1.018919e-01	ci left: 1.348727e-03	ci right 1.494457e-03	k: 1477	n:1040000
CKAP2L   1040000 perm   572 sec   (1819 perm/sec)   p_kst 1.420192e-03   p_cons 8.860000e-02   p_joint 1.067308e-03

Joint ci ratio: 1.170699e-01	ci left: 1.004210e-03	ci right 1.129997e-03	k: 1119	n:1050000
Cons ci ratio: 1.226833e-02	ci left: 8.807232e-02	ci right 8.916042e-02	k: 93046	n:1050000
KS ci ratio: 1.015492e-01	ci left: 1.345164e-03	ci right 1.489990e-03	k: 1487	n:1050000
CKAP2L   1050000 perm   581 sec   (1808 perm/sec)   p_kst 1.416190e-03   p_cons 8.861524e-02   p_joint 1.065714e-03

Joint ci ratio: 1.159870e-01	ci left: 1.013971e-03	ci right 1.139725e-03	k: 1140	n:1060000
Cons ci ratio: 1.220805e-02	ci left: 8.810485e-02	ci right 8.918797e-02	k: 93964	n:1060000
KS ci ratio: 1.009739e-01	ci left: 1.348105e-03	ci right 1.492377e-03	k: 1504	n:1060000
CKAP2L   1060000 perm   590 sec   (1797 perm/sec)   p_kst 1.418868e-03   p_cons 8.864528e-02   p_joint 1.075472e-03

Joint ci ratio: 1.155323e-01	ci left: 1.012662e-03	ci right 1.137728e-03	k: 1149	n:1070000
Cons ci ratio: 1.214957e-02	ci left: 8.812466e-02	ci right 8.920280e-02	k: 94869	n:1070000
KS ci ratio: 1.004083e-01	ci left: 1.350994e-03	ci right 1.494718e-03	k: 1521	n:1070000
CKAP2L   1070000 perm   599 sec   (1786 perm/sec)   p_kst 1.421495e-03   p_cons 8.866262e-02   p_joint 1.073832e-03

Joint ci ratio: 1.150830e-01	ci left: 1.011378e-03	ci right 1.135767e-03	k: 1158	n:1080000
Cons ci ratio: 1.209102e-02	ci left: 8.815613e-02	ci right 8.922941e-02	k: 95787	n:1080000
KS ci ratio: 1.000802e-01	ci left: 1.347511e-03	ci right 1.490369e-03	k: 1531	n:1080000
CKAP2L   1080000 perm   608 sec   (1775 perm/sec)   p_kst 1.417593e-03   p_cons 8.869167e-02   p_joint 1.072222e-03

Joint ci ratio: 1.147372e-01	ci left: 1.008337e-03	ci right 1.131954e-03	k: 1165	n:1090000
Cons ci ratio: 1.203556e-02	ci left: 8.815683e-02	ci right 8.922517e-02	k: 96672	n:1090000
KS ci ratio: 9.988519e-02	ci left: 1.340516e-03	ci right 1.482338e-03	k: 1537	n:1090000
CKAP2L   1090000 perm   618 sec   (1765 perm/sec)   p_kst 1.410092e-03   p_cons 8.868991e-02   p_joint 1.068807e-03

Joint ci ratio: 1.147870e-01	ci left: 9.982869e-04	ci right 1.120728e-03	k: 1164	n:1100000
Cons ci ratio: 1.198119e-02	ci left: 8.815300e-02	ci right 8.921644e-02	k: 97552	n:1100000
KS ci ratio: 9.933756e-02	ci left: 1.343399e-03	ci right 1.484702e-03	k: 1554	n:1100000
CKAP2L   1100000 perm   627 sec   (1754 perm/sec)   p_kst 1.412727e-03   p_cons 8.868364e-02   p_joint 1.058182e-03

Joint ci ratio: 1.142976e-01	ci left: 9.980442e-04	ci right 1.119899e-03	k: 1174	n:1110000
Cons ci ratio: 1.193075e-02	ci left: 8.810613e-02	ci right 8.916449e-02	k: 98384	n:1110000
KS ci ratio: 9.895656e-02	ci left: 1.341839e-03	ci right 1.482405e-03	k: 1566	n:1110000
CKAP2L   1110000 perm   637 sec   (1744 perm/sec)   p_kst 1.410811e-03   p_cons 8.863423e-02   p_joint 1.057658e-03

Joint ci ratio: 1.155854e-01	ci left: 9.665853e-04	ci right 1.086019e-03	k: 1148	n:1120000
Cons ci ratio: 1.187509e-02	ci left: 8.813935e-02	ci right 8.919314e-02	k: 99305	n:1120000
KS ci ratio: 9.823784e-02	ci left: 1.349888e-03	ci right 1.490211e-03	k: 1589	n:1120000
CKAP2L   1120000 perm   646 sec   (1733 perm/sec)   p_kst 1.418750e-03   p_cons 8.866518e-02   p_joint 1.025000e-03

Joint ci ratio: 1.149864e-01	ci left: 9.683447e-04	ci right 1.087334e-03	k: 1160	n:1130000
Cons ci ratio: 1.182467e-02	ci left: 8.811110e-02	ci right 8.916004e-02	k: 100157	n:1130000
KS ci ratio: 9.793055e-02	ci left: 1.346574e-03	ci right 1.486090e-03	k: 1599	n:1130000
CKAP2L   1130000 perm   656 sec   (1723 perm/sec)   p_kst 1.415044e-03   p_cons 8.863451e-02   p_joint 1.026549e-03

Joint ci ratio: 1.150862e-01	ci left: 9.581463e-04	ci right 1.075991e-03	k: 1158	n:1140000
Cons ci ratio: 1.177515e-02	ci left: 8.807985e-02	ci right 8.912400e-02	k: 101005	n:1140000
KS ci ratio: 9.774780e-02	ci left: 1.339896e-03	ci right 1.478446e-03	k: 1605	n:1140000
CKAP2L   1140000 perm   666 sec   (1713 perm/sec)   p_kst 1.407895e-03   p_cons 8.860088e-02   p_joint 1.015789e-03

Joint ci ratio: 1.142997e-01	ci left: 9.633286e-04	ci right 1.080947e-03	k: 1174	n:1150000
Cons ci ratio: 1.171968e-02	ci left: 8.813935e-02	ci right 8.917925e-02	k: 101957	n:1150000
KS ci ratio: 9.726441e-02	ci left: 1.341819e-03	ci right 1.479842e-03	k: 1621	n:1150000
CKAP2L   1150000 perm   675 sec   (1703 perm/sec)   p_kst 1.409565e-03   p_cons 8.865826e-02   p_joint 1.020870e-03

Joint ci ratio: 1.138164e-01	ci left: 9.633988e-04	ci right 1.080495e-03	k: 1184	n:1160000
Cons ci ratio: 1.167108e-02	ci left: 8.811357e-02	ci right 8.914883e-02	k: 102811	n:1160000
KS ci ratio: 9.678813e-02	ci left: 1.343710e-03	ci right 1.481213e-03	k: 1637	n:1160000
CKAP2L   1160000 perm   685 sec   (1693 perm/sec)   p_kst 1.411207e-03   p_cons 8.863017e-02   p_joint 1.020690e-03

Joint ci ratio: 1.176030e-01	ci left: 8.929150e-04	ci right 1.005306e-03	k: 1109	n:1170000
Cons ci ratio: 1.162136e-02	ci left: 8.811211e-02	ci right 8.914292e-02	k: 103693	n:1170000
KS ci ratio: 9.631877e-02	ci left: 1.345570e-03	ci right 1.482558e-03	k: 1653	n:1170000
CKAP2L   1170000 perm   695 sec   (1684 perm/sec)   p_kst 1.412821e-03   p_cons 8.862650e-02   p_joint 9.478632e-04

Joint ci ratio: 1.171815e-01	ci left: 8.919284e-04	ci right 1.003765e-03	k: 1117	n:1180000
Cons ci ratio: 1.157052e-02	ci left: 8.813520e-02	ci right 8.916173e-02	k: 104604	n:1180000
KS ci ratio: 9.591371e-02	ci left: 1.345746e-03	ci right 1.482143e-03	k: 1667	n:1180000
CKAP2L   1180000 perm   705 sec   (1674 perm/sec)   p_kst 1.412712e-03   p_cons 8.864746e-02   p_joint 9.466102e-04

Joint ci ratio: 1.175509e-01	ci left: 8.787232e-04	ci right 9.892752e-04	k: 1110	n:1190000
Cons ci ratio: 1.152183e-02	ci left: 8.813696e-02	ci right 8.915916e-02	k: 105490	n:1190000
KS ci ratio: 9.574200e-02	ci left: 1.339359e-03	ci right 1.474852e-03	k: 1673	n:1190000
CKAP2L   1190000 perm   715 sec   (1664 perm/sec)   p_kst 1.405882e-03   p_cons 8.864706e-02   p_joint 9.327731e-04

Joint ci ratio: 1.017638e-01	ci left: 1.172140e-03	ci right 1.298621e-03	k: 1481	n:1200000
Cons ci ratio: 1.147043e-02	ci left: 8.818524e-02	ci right 8.920341e-02	k: 106432	n:1200000
KS ci ratio: 9.531587e-02	ci left: 1.340399e-03	ci right 1.475360e-03	k: 1688	n:1200000
CKAP2L   1200000 perm   725 sec   (1655 perm/sec)   p_kst 1.406667e-03   p_cons 8.869333e-02   p_joint 1.234167e-03

Joint ci ratio: 1.013543e-01	ci left: 1.172118e-03	ci right 1.298057e-03	k: 1493	n:1210000
Cons ci ratio: 1.142416e-02	ci left: 8.817009e-02	ci right 8.918395e-02	k: 107298	n:1210000
KS ci ratio: 9.475627e-02	ci left: 1.345457e-03	ci right 1.480088e-03	k: 1708	n:1210000
CKAP2L   1210000 perm   735 sec   (1646 perm/sec)   p_kst 1.411570e-03   p_cons 8.867603e-02   p_joint 1.233884e-03

Joint ci ratio: 1.023543e-01	ci left: 1.139345e-03	ci right 1.263043e-03	k: 1464	n:1220000
Cons ci ratio: 1.137763e-02	ci left: 8.816664e-02	ci right 8.917630e-02	k: 108178	n:1220000
KS ci ratio: 9.448041e-02	ci left: 1.342431e-03	ci right 1.476347e-03	k: 1718	n:1220000
CKAP2L   1220000 perm   746 sec   (1635 perm/sec)   p_kst 1.408197e-03   p_cons 8.867049e-02   p_joint 1.200000e-03

Joint ci ratio: 1.019722e-01	ci left: 1.138796e-03	ci right 1.261946e-03	k: 1475	n:1230000
Cons ci ratio: 1.133287e-02	ci left: 8.814622e-02	ci right 8.915165e-02	k: 109037	n:1230000
KS ci ratio: 9.423424e-02	ci left: 1.338662e-03	ci right 1.471834e-03	k: 1727	n:1230000
CKAP2L   1230000 perm   756 sec   (1626 perm/sec)   p_kst 1.404065e-03   p_cons 8.864797e-02   p_joint 1.199187e-03

Joint ci ratio: 1.015261e-01	ci left: 1.139830e-03	ci right 1.262519e-03	k: 1488	n:1240000
Cons ci ratio: 1.128654e-02	ci left: 8.815590e-02	ci right 8.915731e-02	k: 109933	n:1240000
KS ci ratio: 9.382785e-02	ci left: 1.339678e-03	ci right 1.472345e-03	k: 1742	n:1240000
CKAP2L   1240000 perm   767 sec   (1617 perm/sec)   p_kst 1.404839e-03   p_cons 8.865565e-02   p_joint 1.200000e-03

Joint ci ratio: 1.010521e-01	ci left: 1.141627e-03	ci right 1.263903e-03	k: 1502	n:1250000
Cons ci ratio: 1.124056e-02	ci left: 8.816863e-02	ci right 8.916608e-02	k: 110833	n:1250000
KS ci ratio: 9.332041e-02	ci left: 1.343805e-03	ci right 1.476122e-03	k: 1761	n:1250000
CKAP2L   1250000 perm   777 sec   (1608 perm/sec)   p_kst 1.408800e-03   p_cons 8.866640e-02   p_joint 1.201600e-03

Joint ci ratio: 1.007510e-01	ci left: 1.139529e-03	ci right 1.261195e-03	k: 1511	n:1260000
Cons ci ratio: 1.119667e-02	ci left: 8.815900e-02	ci right 8.915242e-02	k: 111705	n:1260000
KS ci ratio: 9.305687e-02	ci left: 1.340892e-03	ci right 1.472528e-03	k: 1771	n:1260000
CKAP2L   1260000 perm   788 sec   (1600 perm/sec)   p_kst 1.405556e-03   p_cons 8.865476e-02   p_joint 1.199206e-03

Joint ci ratio: 1.003206e-01	ci left: 1.140536e-03	ci right 1.261758e-03	k: 1524	n:1270000
Cons ci ratio: 1.115134e-02	ci left: 8.817780e-02	ci right 8.916738e-02	k: 112613	n:1270000
KS ci ratio: 9.271743e-02	ci left: 1.340332e-03	ci right 1.471408e-03	k: 1784	n:1270000
CKAP2L   1270000 perm   798 sec   (1591 perm/sec)   p_kst 1.404724e-03   p_cons 8.867165e-02   p_joint 1.200000e-03

Joint ci ratio: 1.001896e-01	ci left: 1.134672e-03	ci right 1.255104e-03	k: 1528	n:1280000
Cons ci ratio: 1.110644e-02	ci left: 8.819788e-02	ci right 8.918367e-02	k: 113523	n:1280000
KS ci ratio: 9.248475e-02	ci left: 1.336729e-03	ci right 1.467106e-03	k: 1793	n:1280000
CKAP2L   1280000 perm   809 sec   (1582 perm/sec)   p_kst 1.400781e-03   p_cons 8.868984e-02   p_joint 1.193750e-03

Joint ci ratio: 9.999382e-02	ci left: 1.130410e-03	ci right 1.250142e-03	k: 1534	n:1290000
Cons ci ratio: 1.106161e-02	ci left: 8.822461e-02	ci right 8.920670e-02	k: 114442	n:1290000
KS ci ratio: 9.227944e-02	ci left: 1.332425e-03	ci right 1.462078e-03	k: 1801	n:1290000
CKAP2L   1290000 perm   820 sec   (1574 perm/sec)   p_kst 1.396124e-03   p_cons 8.871473e-02   p_joint 1.189147e-03

Outputting figure to mutsig2_images.part000000000038/CKAP2L.7_2274_1290000_0.0013961_0.088715_0.0011891.png
                gene_name: CKAP2L
               theta_stop: 0.100 
                    nperm: 1290000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0013 

Current progress: 16 percent done.
CLDN17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
Cons ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
KS ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
CLDN17   10000 perm   1 sec   (7002 perm/sec)   p_kst 4.835000e-01   p_cons 6.000000e-01   p_joint 6.087000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN17.7_679_10000_0.4835_0.6_0.6087.png
                gene_name: CLDN17
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
CHSY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
Cons ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
KS ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
CHSY3   10000 perm   2 sec   (6189 perm/sec)   p_kst 4.916000e-01   p_cons 4.860000e-02   p_joint 1.667000e-01

Joint ci ratio: 6.857068e-02	ci left: 1.356129e-01	ci right 1.452919e-01	k: 2808	n:20000
Cons ci ratio: 1.231716e-01	ci left: 4.522388e-02	ci right 5.120834e-02	k: 963	n:20000
KS ci ratio: 2.816353e-02	ci left: 4.850480e-01	ci right 4.989544e-01	k: 9840	n:20000
CHSY3   20000 perm   4 sec   (5530 perm/sec)   p_kst 4.920000e-01   p_cons 4.815000e-02   p_joint 1.404000e-01

Joint ci ratio: 5.278877e-02	ci left: 1.511524e-01	ci right 1.593811e-01	k: 4657	n:30000
Cons ci ratio: 1.003151e-01	ci left: 4.599867e-02	ci right 5.088926e-02	k: 1452	n:30000
KS ci ratio: 2.303745e-02	ci left: 4.854274e-01	ci right 4.967743e-01	k: 14733	n:30000
CHSY3   30000 perm   6 sec   (5266 perm/sec)   p_kst 4.911000e-01   p_cons 4.840000e-02   p_joint 1.552333e-01

Joint ci ratio: 4.461875e-02	ci left: 1.581289e-01	ci right 1.653703e-01	k: 6469	n:40000
Cons ci ratio: 8.910567e-02	ci left: 4.408994e-02	ci right 4.822627e-02	k: 1845	n:40000
KS ci ratio: 1.999323e-02	ci left: 4.851394e-01	ci right 4.949620e-01	k: 19602	n:40000
CHSY3   40000 perm   8 sec   (5092 perm/sec)   p_kst 4.900500e-01   p_cons 4.612500e-02   p_joint 1.617250e-01

Outputting figure to mutsig2_images.part000000000038/CHSY3.6_2661_40000_0.49005_0.046125_0.16173.png
                gene_name: CHSY3
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
CILP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
Cons ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
KS ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
CILP2   10000 perm   2 sec   (5752 perm/sec)   p_kst 1.670000e-01   p_cons 5.017000e-01   p_joint 3.017000e-01

Outputting figure to mutsig2_images.part000000000038/CILP2.6_3503_10000_0.167_0.5017_0.3017.png
                gene_name: CILP2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 21 percent done.
CKAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
KS ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
CKAP4   10000 perm   2 sec   (5836 perm/sec)   p_kst 3.220000e-02   p_cons 8.890000e-01   p_joint 7.050000e-02

Joint ci ratio: 7.767726e-02	ci left: 1.085455e-01	ci right 1.173674e-01	k: 2258	n:20000
Cons ci ratio: 9.780792e-03	ci left: 8.848699e-01	ci right 8.936166e-01	k: 17786	n:20000
KS ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
CKAP4   20000 perm   4 sec   (5305 perm/sec)   p_kst 3.030000e-02   p_cons 8.893000e-01   p_joint 1.129000e-01

Joint ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
Cons ci ratio: 8.005916e-03	ci left: 8.851881e-01	ci right 8.923364e-01	k: 26664	n:30000
KS ci ratio: 1.265318e-01	ci left: 2.903531e-02	ci right 3.298954e-02	k: 929	n:30000
CKAP4   30000 perm   6 sec   (5088 perm/sec)   p_kst 3.096667e-02   p_cons 8.888000e-01   p_joint 6.550000e-02

Joint ci ratio: 7.193892e-02	ci left: 6.660879e-02	ci right 7.160398e-02	k: 2763	n:40000
Cons ci ratio: 6.975197e-03	ci left: 8.844640e-01	ci right 8.906796e-01	k: 35504	n:40000
KS ci ratio: 1.094891e-01	ci left: 2.934747e-02	ci right 3.277106e-02	k: 1241	n:40000
CKAP4   40000 perm   8 sec   (4938 perm/sec)   p_kst 3.102500e-02   p_cons 8.876000e-01   p_joint 6.907500e-02

Joint ci ratio: 6.330716e-02	ci left: 6.896089e-02	ci right 7.348905e-02	k: 3560	n:50000
Cons ci ratio: 6.051460e-03	ci left: 8.908037e-01	ci right 8.962305e-01	k: 44677	n:50000
KS ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
CKAP4   50000 perm   10 sec   (4823 perm/sec)   p_kst 3.066000e-02   p_cons 8.935400e-01   p_joint 7.120000e-02

Outputting figure to mutsig2_images.part000000000038/CKAP4.6_1817_50000_0.03066_0.89354_0.0712.png
                gene_name: CKAP4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 23 percent done.
CLCNKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
Cons ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
CLCNKA   10000 perm   2 sec   (6324 perm/sec)   p_kst 8.760000e-02   p_cons 2.660000e-02   p_joint 4.490000e-02

Joint ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
Cons ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
KS ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
CLCNKA   20000 perm   4 sec   (5652 perm/sec)   p_kst 8.800000e-02   p_cons 2.840000e-02   p_joint 4.090000e-02

Joint ci ratio: 1.411425e-01	ci left: 2.329494e-02	ci right 2.686451e-02	k: 751	n:30000
Cons ci ratio: 1.328564e-01	ci left: 2.632361e-02	ci right 3.010183e-02	k: 845	n:30000
KS ci ratio: 7.148559e-02	ci left: 8.783409e-02	ci right 9.437868e-02	k: 2732	n:30000
CLCNKA   30000 perm   6 sec   (5404 perm/sec)   p_kst 9.106667e-02   p_cons 2.816667e-02   p_joint 2.503333e-02

Joint ci ratio: 1.143295e-01	ci left: 2.691545e-02	ci right 3.020347e-02	k: 1141	n:40000
Cons ci ratio: 1.165546e-01	ci left: 2.589497e-02	ci right 2.912412e-02	k: 1099	n:40000
KS ci ratio: 6.215280e-02	ci left: 8.763182e-02	ci right 9.327780e-02	k: 3617	n:40000
CLCNKA   40000 perm   8 sec   (5235 perm/sec)   p_kst 9.042500e-02   p_cons 2.747500e-02   p_joint 2.852500e-02

Joint ci ratio: 1.241794e-01	ci left: 1.832534e-02	ci right 2.077089e-02	k: 976	n:50000
Cons ci ratio: 9.439546e-02	ci left: 3.176404e-02	ci right 3.493044e-02	k: 1666	n:50000
KS ci ratio: 5.577792e-02	ci left: 8.738692e-02	ci right 9.242081e-02	k: 4494	n:50000
CLCNKA   50000 perm   10 sec   (5117 perm/sec)   p_kst 8.988000e-02   p_cons 3.332000e-02   p_joint 1.952000e-02

Joint ci ratio: 9.883058e-02	ci left: 2.428584e-02	ci right 2.682700e-02	k: 1532	n:60000
Cons ci ratio: 8.589156e-02	ci left: 3.210713e-02	ci right 3.500489e-02	k: 2012	n:60000
KS ci ratio: 5.136934e-02	ci left: 8.618959e-02	ci right 9.075030e-02	k: 5307	n:60000
CLCNKA   60000 perm   12 sec   (5008 perm/sec)   p_kst 8.845000e-02   p_cons 3.353333e-02   p_joint 2.553333e-02

Outputting figure to mutsig2_images.part000000000038/CLCNKA.6_2140_60000_0.08845_0.033533_0.025533.png
                gene_name: CLCNKA
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 25 percent done.
CHRNA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
KS ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
CHRNA9   10000 perm   1 sec   (6667 perm/sec)   p_kst 7.005000e-01   p_cons 3.583000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNA9.5_1460_10000_0.7005_0.3583_0.7134.png
                gene_name: CHRNA9
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 27 percent done.
CHST12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
CHST12   10000 perm   2 sec   (6569 perm/sec)   p_kst 6.981000e-01   p_cons 9.504000e-01   p_joint 8.754000e-01

Outputting figure to mutsig2_images.part000000000038/CHST12.5_1249_10000_0.6981_0.9504_0.8754.png
                gene_name: CHST12
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 29 percent done.
CKAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
KS ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
CKAP2   10000 perm   2 sec   (6018 perm/sec)   p_kst 3.380000e-01   p_cons 1.132000e-01   p_joint 3.066000e-01

Joint ci ratio: 4.457549e-02	ci left: 2.725930e-01	ci right 2.850714e-01	k: 5576	n:20000
Cons ci ratio: 7.556267e-02	ci left: 1.141006e-01	ci right 1.231106e-01	k: 2371	n:20000
KS ci ratio: 3.892672e-02	ci left: 3.298511e-01	ci right 3.429965e-01	k: 6728	n:20000
CKAP2   20000 perm   4 sec   (5622 perm/sec)   p_kst 3.364000e-01   p_cons 1.185500e-01   p_joint 2.788000e-01

Outputting figure to mutsig2_images.part000000000038/CKAP2.5_2088_20000_0.3364_0.11855_0.2788.png
                gene_name: CKAP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 30 percent done.
CLCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
Cons ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
KS ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
CLCA1   10000 perm   2 sec   (5968 perm/sec)   p_kst 5.604000e-01   p_cons 3.754000e-01   p_joint 5.116000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA1.5_2801_10000_0.5604_0.3754_0.5116.png
                gene_name: CLCA1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 32 percent done.
CLCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
CLCN3   10000 perm   2 sec   (5669 perm/sec)   p_kst 8.936000e-01   p_cons 1.609000e-01   p_joint 8.062000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN3.5_2653_10000_0.8936_0.1609_0.8062.png
                gene_name: CLCN3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 34 percent done.
CLCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
CLCN4   10000 perm   2 sec   (5844 perm/sec)   p_kst 4.046000e-01   p_cons 2.988000e-01   p_joint 4.191000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN4.5_2327_10000_0.4046_0.2988_0.4191.png
                gene_name: CLCN4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 36 percent done.
CHRNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
Cons ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
CHRNB1   10000 perm   1 sec   (6848 perm/sec)   p_kst 3.304000e-01   p_cons 7.207000e-01   p_joint 6.993000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNB1.4_1550_10000_0.3304_0.7207_0.6993.png
                gene_name: CHRNB1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 38 percent done.
CHRNB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.732748e-02	ci left: 3.093726e-01	ci right 3.277332e-01	k: 3185	n:10000
Cons ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
KS ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
CHRNB4   10000 perm   2 sec   (6436 perm/sec)   p_kst 6.219000e-01   p_cons 2.474000e-01   p_joint 3.185000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNB4.4_1521_10000_0.6219_0.2474_0.3185.png
                gene_name: CHRNB4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 39 percent done.
CHST15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
Cons ci ratio: 5.044745e-03	ci left: 9.811299e-01	ci right 9.861827e-01	k: 9838	n:10000
KS ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
CHST15   10000 perm   1 sec   (7012 perm/sec)   p_kst 6.941000e-01   p_cons 9.838000e-01   p_joint 9.765000e-01

Outputting figure to mutsig2_images.part000000000038/CHST15.4_1714_10000_0.6941_0.9838_0.9765.png
                gene_name: CHST15
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 41 percent done.
CHST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.894348e-02	ci left: 3.811202e-01	ci right 4.003435e-01	k: 3907	n:10000
Cons ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
KS ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
CHST2   10000 perm   2 sec   (6466 perm/sec)   p_kst 2.502000e-01   p_cons 7.377000e-01   p_joint 3.907000e-01

Outputting figure to mutsig2_images.part000000000038/CHST2.4_1597_10000_0.2502_0.7377_0.3907.png
                gene_name: CHST2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
CHST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
CHST5   10000 perm   1 sec   (6789 perm/sec)   p_kst 6.440000e-02   p_cons 3.949000e-01   p_joint 1.898000e-01

Joint ci ratio: 7.016245e-02	ci left: 1.302431e-01	ci right 1.397633e-01	k: 2699	n:20000
Cons ci ratio: 3.448479e-02	ci left: 3.856737e-01	ci right 3.992575e-01	k: 7849	n:20000
KS ci ratio: 1.058244e-01	ci left: 6.079280e-02	ci right 6.763456e-02	k: 1283	n:20000
CHST5   20000 perm   3 sec   (6031 perm/sec)   p_kst 6.415000e-02   p_cons 3.924500e-01   p_joint 1.349500e-01

Joint ci ratio: 6.925006e-02	ci left: 9.314841e-02	ci right 9.986330e-02	k: 2894	n:30000
Cons ci ratio: 2.914340e-02	ci left: 3.706806e-01	ci right 3.816768e-01	k: 11285	n:30000
KS ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
CHST5   30000 perm   5 sec   (5762 perm/sec)   p_kst 6.143333e-02   p_cons 3.761667e-01   p_joint 9.646667e-02

Outputting figure to mutsig2_images.part000000000038/CHST5.4_1240_30000_0.061433_0.37617_0.096467.png
                gene_name: CHST5
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 45 percent done.
CIB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
Cons ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
KS ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
CIB4   10000 perm   1 sec   (7147 perm/sec)   p_kst 4.723000e-01   p_cons 1.904000e-01   p_joint 2.537000e-01

Outputting figure to mutsig2_images.part000000000038/CIB4.4_586_10000_0.4723_0.1904_0.2537.png
                gene_name: CIB4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 46 percent done.
CIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
Cons ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
KS ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
CIC   10000 perm   2 sec   (5434 perm/sec)   p_kst 6.473000e-01   p_cons 1.937000e-01   p_joint 5.415000e-01

Outputting figure to mutsig2_images.part000000000038/CIC.4_4907_10000_0.6473_0.1937_0.5415.png
                gene_name: CIC
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
CIITA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
CIITA   10000 perm   2 sec   (5880 perm/sec)   p_kst 6.954000e-01   p_cons 2.000000e-01   p_joint 6.571000e-01

Outputting figure to mutsig2_images.part000000000038/CIITA.4_3469_10000_0.6954_0.2_0.6571.png
                gene_name: CIITA
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 50 percent done.
CILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
CILP   10000 perm   2 sec   (6071 perm/sec)   p_kst 6.293000e-01   p_cons 3.460000e-01   p_joint 6.587000e-01

Outputting figure to mutsig2_images.part000000000038/CILP.4_3587_10000_0.6293_0.346_0.6587.png
                gene_name: CILP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 52 percent done.
CKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
CKAP5   10000 perm   2 sec   (4964 perm/sec)   p_kst 2.100000e-01   p_cons 7.397000e-01   p_joint 5.001000e-01

Outputting figure to mutsig2_images.part000000000038/CKAP5.4_6271_10000_0.21_0.7397_0.5001.png
                gene_name: CKAP5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 54 percent done.
CLCN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
Cons ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
KS ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
CLCN6   10000 perm   2 sec   (6034 perm/sec)   p_kst 2.442000e-01   p_cons 2.269000e-01   p_joint 3.170000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN6.4_2712_10000_0.2442_0.2269_0.317.png
                gene_name: CLCN6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
CLDN14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
CLDN14   10000 perm   1 sec   (7446 perm/sec)   p_kst 7.470000e-02   p_cons 3.471000e-01   p_joint 1.391000e-01

Joint ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
Cons ci ratio: 3.775339e-02	ci left: 3.435860e-01	ci right 3.568576e-01	k: 7004	n:20000
KS ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
CLDN14   20000 perm   3 sec   (6602 perm/sec)   p_kst 7.565000e-02   p_cons 3.502000e-01   p_joint 1.123000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN14.4_724_20000_0.07565_0.3502_0.1123.png
                gene_name: CLDN14
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
CHRNA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
Cons ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
KS ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
CHRNA7   10000 perm   1 sec   (7118 perm/sec)   p_kst 2.330000e-01   p_cons 5.764000e-01   p_joint 3.801000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNA7.3_1549_10000_0.233_0.5764_0.3801.png
                gene_name: CHRNA7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 59 percent done.
CHRNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
Cons ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
KS ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
CHRNB2   10000 perm   1 sec   (6872 perm/sec)   p_kst 3.381000e-01   p_cons 2.122000e-01   p_joint 3.059000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNB2.3_1533_10000_0.3381_0.2122_0.3059.png
                gene_name: CHRNB2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 61 percent done.
CHRNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
CHRNE   10000 perm   1 sec   (7079 perm/sec)   p_kst 2.272000e-01   p_cons 5.209000e-01   p_joint 4.540000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNE.3_1530_10000_0.2272_0.5209_0.454.png
                gene_name: CHRNE
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
CHST13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
Cons ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
KS ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
CHST13   10000 perm   1 sec   (7429 perm/sec)   p_kst 9.198000e-01   p_cons 3.439000e-01   p_joint 6.155000e-01

Outputting figure to mutsig2_images.part000000000038/CHST13.3_1038_10000_0.9198_0.3439_0.6155.png
                gene_name: CHST13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 64 percent done.
CHST6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 3.500427e-02	ci left: 5.464973e-01	ci right 5.660699e-01	k: 5563	n:10000
CHST6   10000 perm   1 sec   (7370 perm/sec)   p_kst 5.563000e-01   p_cons 7.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST6.3_1192_10000_0.5563_0.7591_1.png
                gene_name: CHST6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CHUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
Cons ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
KS ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
CHUK   10000 perm   2 sec   (6609 perm/sec)   p_kst 8.111000e-01   p_cons 1.647000e-01   p_joint 5.542000e-01

Outputting figure to mutsig2_images.part000000000038/CHUK.3_2322_10000_0.8111_0.1647_0.5542.png
                gene_name: CHUK
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 68 percent done.
CIR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
CIR1   10000 perm   1 sec   (7231 perm/sec)   p_kst 1.170000e-01   p_cons 3.430000e-02   p_joint 1.161000e-01

Joint ci ratio: 8.085991e-02	ci left: 1.008823e-01	ci right 1.094329e-01	k: 2102	n:20000
Cons ci ratio: 1.491115e-01	ci left: 3.090466e-02	ci right 3.593219e-02	k: 667	n:20000
KS ci ratio: 7.565317e-02	ci left: 1.138548e-01	ci right 1.228565e-01	k: 2366	n:20000
CIR1   20000 perm   3 sec   (6393 perm/sec)   p_kst 1.183000e-01   p_cons 3.335000e-02   p_joint 1.051000e-01

Joint ci ratio: 5.771682e-02	ci left: 1.294069e-01	ci right 1.371310e-01	k: 3997	n:30000
Cons ci ratio: 1.228966e-01	ci left: 3.078084e-02	ci right 3.484363e-02	k: 983	n:30000
KS ci ratio: 6.134546e-02	ci left: 1.161128e-01	ci right 1.234943e-01	k: 3593	n:30000
CIR1   30000 perm   5 sec   (6071 perm/sec)   p_kst 1.197667e-01   p_cons 3.276667e-02   p_joint 1.332333e-01

Joint ci ratio: 5.447234e-02	ci left: 1.114939e-01	ci right 1.177621e-01	k: 4584	n:40000
Cons ci ratio: 1.072375e-01	ci left: 3.058895e-02	ci right 3.407937e-02	k: 1292	n:40000
KS ci ratio: 5.346334e-02	ci left: 1.152986e-01	ci right 1.216569e-01	k: 4738	n:40000
CIR1   40000 perm   7 sec   (5855 perm/sec)   p_kst 1.184500e-01   p_cons 3.230000e-02   p_joint 1.146000e-01

Joint ci ratio: 5.532604e-02	ci left: 8.871008e-02	ci right 9.377749e-02	k: 4561	n:50000
Cons ci ratio: 9.620117e-02	ci left: 3.059174e-02	ci right 3.370289e-02	k: 1606	n:50000
KS ci ratio: 4.810866e-02	ci left: 1.143929e-01	ci right 1.200517e-01	k: 5860	n:50000
CIR1   50000 perm   9 sec   (5679 perm/sec)   p_kst 1.172000e-01   p_cons 3.212000e-02   p_joint 9.122000e-02

Outputting figure to mutsig2_images.part000000000038/CIR1.3_1393_50000_0.1172_0.03212_0.09122.png
                gene_name: CIR1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 70 percent done.
CLDN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
Cons ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
KS ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
CLDN1   10000 perm   1 sec   (7678 perm/sec)   p_kst 6.636000e-01   p_cons 1.406000e-01   p_joint 3.916000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN1.3_652_10000_0.6636_0.1406_0.3916.png
                gene_name: CLDN1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 71 percent done.
CLDN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
Cons ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
KS ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
CLDN11   10000 perm   1 sec   (7395 perm/sec)   p_kst 2.550000e-02   p_cons 1.510000e-01   p_joint 9.510000e-02

Joint ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
Cons ci ratio: 6.694336e-02	ci left: 1.414288e-01	ci right 1.512743e-01	k: 2926	n:20000
KS ci ratio: 1.708341e-01	ci left: 2.345530e-02	ci right 2.788407e-02	k: 512	n:20000
CLDN11   20000 perm   3 sec   (6545 perm/sec)   p_kst 2.560000e-02   p_cons 1.463000e-01   p_joint 7.730000e-02

Joint ci ratio: 1.032619e-01	ci left: 4.346182e-02	ci right 4.822663e-02	k: 1374	n:30000
Cons ci ratio: 5.483133e-02	ci left: 1.415607e-01	ci right 1.495747e-01	k: 4366	n:30000
KS ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
CLDN11   30000 perm   5 sec   (6226 perm/sec)   p_kst 2.430000e-02   p_cons 1.455333e-01   p_joint 4.580000e-02

Joint ci ratio: 8.943632e-02	ci left: 4.377187e-02	ci right 4.789439e-02	k: 1832	n:40000
Cons ci ratio: 4.736967e-02	ci left: 1.427014e-01	ci right 1.496500e-01	k: 5846	n:40000
KS ci ratio: 1.234813e-01	ci left: 2.305558e-02	ci right 2.611397e-02	k: 982	n:40000
CLDN11   40000 perm   7 sec   (5993 perm/sec)   p_kst 2.455000e-02   p_cons 1.461500e-01   p_joint 4.580000e-02

Joint ci ratio: 7.579390e-02	ci left: 4.885210e-02	ci right 5.272027e-02	k: 2538	n:50000
Cons ci ratio: 4.242575e-02	ci left: 1.427372e-01	ci right 1.489440e-01	k: 7291	n:50000
KS ci ratio: 1.092547e-01	ci left: 2.372702e-02	ci right 2.648849e-02	k: 1254	n:50000
CLDN11   50000 perm   9 sec   (5823 perm/sec)   p_kst 2.508000e-02   p_cons 1.458200e-01   p_joint 5.076000e-02

Joint ci ratio: 9.997418e-02	ci left: 2.373293e-02	ci right 2.624664e-02	k: 1498	n:60000
Cons ci ratio: 3.879522e-02	ci left: 1.425883e-01	ci right 1.482460e-01	k: 8724	n:60000
KS ci ratio: 1.011570e-01	ci left: 2.318018e-02	ci right 2.566612e-02	k: 1464	n:60000
CLDN11   60000 perm   11 sec   (5678 perm/sec)   p_kst 2.440000e-02   p_cons 1.454000e-01   p_joint 2.496667e-02

Joint ci ratio: 9.402520e-02	ci left: 2.308819e-02	ci right 2.538005e-02	k: 1695	n:70000
Cons ci ratio: 3.605465e-02	ci left: 1.418605e-01	ci right 1.470833e-01	k: 10112	n:70000
KS ci ratio: 9.436790e-02	ci left: 2.292071e-02	ci right 2.520469e-02	k: 1683	n:70000
CLDN11   70000 perm   13 sec   (5550 perm/sec)   p_kst 2.404286e-02   p_cons 1.444571e-01   p_joint 2.421429e-02

Outputting figure to mutsig2_images.part000000000038/CLDN11.3_636_70000_0.024043_0.14446_0.024214.png
                gene_name: CLDN11
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 73 percent done.
CLDN16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
CLDN16   10000 perm   1 sec   (7598 perm/sec)   p_kst 5.469000e-01   p_cons 4.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CLDN16.3_938_10000_0.5469_0.446_1.png
                gene_name: CLDN16
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CLDN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
CLDN18   10000 perm   1 sec   (8046 perm/sec)   p_kst 3.951000e-01   p_cons 2.985000e-01   p_joint 2.470000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN18.3_1030_10000_0.3951_0.2985_0.247.png
                gene_name: CLDN18
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 77 percent done.
CHRNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
CHRNB3   10000 perm   1 sec   (7511 perm/sec)   p_kst 8.385000e-01   p_cons 2.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHRNB3.2_1401_10000_0.8385_0.2168_1.png
                gene_name: CHRNB3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CHST10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
Cons ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
KS ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
CHST10   10000 perm   1 sec   (7672 perm/sec)   p_kst 4.585000e-01   p_cons 4.565000e-01   p_joint 9.883000e-01

Outputting figure to mutsig2_images.part000000000038/CHST10.2_1091_10000_0.4585_0.4565_0.9883.png
                gene_name: CHST10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
CHST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
KS ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
CHST3   10000 perm   1 sec   (7409 perm/sec)   p_kst 1.859000e-01   p_cons 8.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST3.2_1448_10000_0.1859_0.8238_1.png
                gene_name: CHST3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CHST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
Cons ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
KS ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
CHST8   10000 perm   1 sec   (7477 perm/sec)   p_kst 6.195000e-01   p_cons 5.207000e-01   p_joint 6.110000e-01

Outputting figure to mutsig2_images.part000000000038/CHST8.2_1287_10000_0.6195_0.5207_0.611.png
                gene_name: CHST8
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
CHST9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
CHST9   10000 perm   1 sec   (7592 perm/sec)   p_kst 9.602000e-01   p_cons 4.645000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST9.2_1352_10000_0.9602_0.4645_1.png
                gene_name: CHST9
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
CHSY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
Cons ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
CHSY1   10000 perm   1 sec   (6910 perm/sec)   p_kst 7.940000e-02   p_cons 2.805000e-01   p_joint 8.360000e-01

Joint ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
Cons ci ratio: 4.464763e-02	ci left: 2.719475e-01	ci right 2.844170e-01	k: 5563	n:20000
KS ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
CHSY1   20000 perm   3 sec   (6083 perm/sec)   p_kst 8.000000e-02   p_cons 2.781500e-01   p_joint 8.000000e-02

Outputting figure to mutsig2_images.part000000000038/CHSY1.2_2421_20000_0.08_0.27815_0.08.png
                gene_name: CHSY1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 88 percent done.
CIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
CIB2   10000 perm   1 sec   (7987 perm/sec)   p_kst 8.155000e-01   p_cons 8.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIB2.2_588_10000_0.8155_0.8168_1.png
                gene_name: CIB2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CIB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
CIB3   10000 perm   1 sec   (7970 perm/sec)   p_kst 9.745000e-01   p_cons 7.140000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIB3.2_588_10000_0.9745_0.714_1.png
                gene_name: CIB3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CITED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
CITED2   10000 perm   1 sec   (7827 perm/sec)   p_kst 3.868000e-01   p_cons 3.225000e-01   p_joint 4.119000e-01

Outputting figure to mutsig2_images.part000000000038/CITED2.2_817_10000_0.3868_0.3225_0.4119.png
                gene_name: CITED2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 93 percent done.
CIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
KS ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
CIZ1   10000 perm   1 sec   (6771 perm/sec)   p_kst 9.520000e-02   p_cons 4.503000e-01   p_joint 3.952000e-01

Joint ci ratio: 4.293792e-02	ci left: 2.877906e-01	ci right 3.004693e-01	k: 5882	n:20000
Cons ci ratio: 3.192692e-02	ci left: 4.228748e-01	ci right 4.366456e-01	k: 8595	n:20000
KS ci ratio: 8.368985e-02	ci left: 9.469809e-02	ci right 1.030190e-01	k: 1976	n:20000
CIZ1   20000 perm   3 sec   (5959 perm/sec)   p_kst 9.880000e-02   p_cons 4.297500e-01   p_joint 2.941000e-01

Outputting figure to mutsig2_images.part000000000038/CIZ1.2_2761_20000_0.0988_0.42975_0.2941.png
                gene_name: CIZ1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 95 percent done.
CKMT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
Cons ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
KS ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
CKMT1A   10000 perm   1 sec   (7514 perm/sec)   p_kst 1.114000e-01   p_cons 8.479000e-01   p_joint 7.185000e-01

Joint ci ratio: 1.182237e-02	ci left: 8.410237e-01	ci right 8.510755e-01	k: 16922	n:20000
Cons ci ratio: 1.208675e-02	ci left: 8.350980e-01	ci right 8.453029e-01	k: 16805	n:20000
KS ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
CKMT1A   20000 perm   3 sec   (6604 perm/sec)   p_kst 1.094500e-01   p_cons 8.402500e-01   p_joint 8.461000e-01

Outputting figure to mutsig2_images.part000000000038/CKMT1A.2_1290_20000_0.10945_0.84025_0.8461.png
                gene_name: CKMT1A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 96 percent done.
CKMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
Cons ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
KS ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
CKMT2   10000 perm   1 sec   (7545 perm/sec)   p_kst 5.080000e-02   p_cons 1.105000e-01   p_joint 2.544000e-01

Joint ci ratio: 5.009438e-02	ci left: 2.284934e-01	ci right 2.402839e-01	k: 4687	n:20000
Cons ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
KS ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
CKMT2   20000 perm   3 sec   (6612 perm/sec)   p_kst 5.010000e-02   p_cons 1.116000e-01   p_joint 2.343500e-01

Joint ci ratio: 4.405103e-02	ci left: 2.042124e-01	ci right 2.134441e-01	k: 6264	n:30000
Cons ci ratio: 7.056612e-02	ci left: 8.996598e-02	ci right 9.657970e-02	k: 2797	n:30000
KS ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
CKMT2   30000 perm   5 sec   (6287 perm/sec)   p_kst 5.106667e-02   p_cons 9.323333e-02   p_joint 2.088000e-01

Outputting figure to mutsig2_images.part000000000038/CKMT2.2_1296_30000_0.051067_0.093233_0.2088.png
                gene_name: CKMT2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 98 percent done.
CLCN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
Cons ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
KS ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
CLCN5   10000 perm   1 sec   (6753 perm/sec)   p_kst 5.970000e-01   p_cons 9.083000e-01   p_joint 7.580000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN5.2_2503_10000_0.597_0.9083_0.758.png
                gene_name: CLCN5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000038
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 38 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4421829: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000039> was used as the working directory.
Started at Wed Oct 24 17:36:39 2012
Results reported at Wed Oct 24 20:46:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000039.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000039.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 39  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000039.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11556.10 sec.
    Max Memory :      5295 MB
    Max Swap   :      7695 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
39
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 39
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 39: processing genes 3439 - 3528
Calculating significance of each gene.
Using projection method.
3439	CLDN19	1
3440	CLDN2	1
3441	CLDN20	5.606205e-01
3442	CLDN22	1
3443	CLDN25	5.758495e-02
3444	CLDN3	1
3445	CLDN4	3.709171e-01
3446	CLDN5	1
3447	CLDN6	1
3448	CLDN7	1
3449	CLDN8	1.247939e-02
3450	CLDN9	4.208515e-01
3451	CLDND1	5.460678e-01
3452	CLDND2	1
3453	CLEC10A	8.443247e-01
3454	CLEC11A	1
3455	CLEC12A	8.903418e-02
3456	CLEC12B	1.083279e-01
3457	CLEC14A	3.307355e-01
3458	CLEC16A	8.280024e-01
3459	CLEC17A	4.560802e-01
3460	CLEC18A	1
3461	CLEC18B	3.943498e-01
3462	CLEC18C	1
3463	CLEC1A	1.239843e-01
3464	CLEC1B	7.471904e-01
3465	CLEC2B	1
3466	CLEC2D	4.468337e-01
3467	CLEC2L	1
3468	CLEC3A	8.790878e-02
3469	CLEC3B	1
3470	CLEC4A	6.923710e-01
3471	CLEC4C	7.351193e-01
3472	CLEC4D	3.341152e-01
3473	CLEC4E	6.817770e-01
3474	CLEC4F	1.714142e-01
3475	CLEC4G	1
3476	CLEC4M	5.613635e-01
3477	CLEC5A	8.503191e-02
3478	CLEC6A	1.109740e-01
3479	CLEC7A	3.624261e-01
3480	CLEC9A	6.032389e-01
3481	CLECL1	1
3482	CLGN	6.688914e-01
3483	CLIC1	2.440342e-01
3484	CLIC2	3.028759e-01
3485	CLIC3	1
3486	CLIC4	7.629491e-01
3487	CLIC5	1
3488	CLIC6	6.332911e-01
3489	CLINT1	8.421312e-01
3490	CLIP1	9.974703e-01
3491	CLIP2	4.988164e-01
3492	CLIP3	6.817263e-01
3493	CLIP4	7.347995e-01
3494	CLK1	8.058952e-01
3495	CLK2	4.191104e-01
3496	CLK3	9.782666e-01
3497	CLK4	2.551118e-01
3498	CLLU1	1
3499	CLLU1OS	1.382491e-01
3500	CLMN	6.296178e-01
3501	CLN3	1
3502	CLN5	1
3503	CLN6	2.510167e-01
3504	CLN8	3.750250e-01
3505	CLNK	6.879484e-02
3506	CLNS1A	1
3507	CLOCK	9.528840e-01
3508	CLP1	1
3509	CLPB	9.738210e-01
3510	CLPP	1
3511	CLPS	3.127087e-01
3512	CLPTM1	1
3513	CLPTM1L	1
3514	CLPX	5.087635e-01
3515	CLRN1	2.328494e-01
3516	CLRN2	6.657331e-01
3517	CLRN3	1
3518	CLSPN	8.684136e-01
3519	CLSTN1	9.938172e-01
3520	CLSTN2	8.770761e-01
3521	CLSTN3	9.741792e-01
3522	CLTA	1
3523	CLTB	7.810267e-01
3524	CLTC	6.013686e-01
3525	CLTCL1	7.667131e-01
3526	CLU	1.285881e-01
3527	CLUAP1	1
3528	CLUL1	2.125439e-01
Done

Running MutSig 2:
Scatter job 39: processing genes 3439 - 3528
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLSTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
CLSTN2   10000 perm   2 sec   (4046 perm/sec)   p_kst 2.755000e-01   p_cons 1.080000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.242589e-01	ci left: 4.444751e-02	ci right 5.038496e-02	k: 947	n:20000
Cons ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
KS ci ratio: 4.466988e-02	ci left: 2.717489e-01	ci right 2.842157e-01	k: 5559	n:20000
CLSTN2   20000 perm   7 sec   (2714 perm/sec)   p_kst 2.779500e-01   p_cons 1.180000e-02   p_joint 4.735000e-02

Joint ci ratio: 1.322145e-01	ci left: 2.658166e-02	ci right 3.037705e-02	k: 853	n:30000
Cons ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
KS ci ratio: 3.616343e-02	ci left: 2.763162e-01	ci right 2.865262e-01	k: 8442	n:30000
CLSTN2   30000 perm   10 sec   (2969 perm/sec)   p_kst 2.814000e-01   p_cons 1.106667e-02   p_joint 2.843333e-02

Joint ci ratio: 1.041948e-01	ci left: 3.239160e-02	ci right 3.597644e-02	k: 1366	n:40000
Cons ci ratio: 1.833343e-01	ci left: 1.026340e-02	ci right 1.235845e-02	k: 451	n:40000
KS ci ratio: 3.126115e-02	ci left: 2.777431e-01	ci right 2.865886e-01	k: 11286	n:40000
CLSTN2   40000 perm   13 sec   (3104 perm/sec)   p_kst 2.821500e-01   p_cons 1.127500e-02   p_joint 3.415000e-02

Joint ci ratio: 1.039780e-01	ci left: 2.620102e-02	ci right 2.909417e-02	k: 1381	n:50000
Cons ci ratio: 1.621038e-01	ci left: 1.062229e-02	ci right 1.251505e-02	k: 577	n:50000
KS ci ratio: 2.794807e-02	ci left: 2.783972e-01	ci right 2.863081e-01	k: 14117	n:50000
CLSTN2   50000 perm   16 sec   (3162 perm/sec)   p_kst 2.823400e-01   p_cons 1.154000e-02   p_joint 2.762000e-02

Joint ci ratio: 1.015843e-01	ci left: 2.298513e-02	ci right 2.546118e-02	k: 1452	n:60000
Cons ci ratio: 1.481530e-01	ci left: 1.067829e-02	ci right 1.240277e-02	k: 691	n:60000
KS ci ratio: 2.550733e-02	ci left: 2.788334e-01	ci right 2.860543e-01	k: 16946	n:60000
CLSTN2   60000 perm   19 sec   (3197 perm/sec)   p_kst 2.824333e-01   p_cons 1.151667e-02   p_joint 2.420000e-02

Joint ci ratio: 9.138153e-02	ci left: 2.444255e-02	ci right 2.679700e-02	k: 1792	n:70000
Cons ci ratio: 1.360872e-01	ci left: 1.091655e-02	ci right 1.252430e-02	k: 819	n:70000
KS ci ratio: 2.362644e-02	ci left: 2.789105e-01	ci right 2.855932e-01	k: 19757	n:70000
CLSTN2   70000 perm   22 sec   (3212 perm/sec)   p_kst 2.822429e-01   p_cons 1.170000e-02   p_joint 2.560000e-02

Joint ci ratio: 8.197744e-02	ci left: 2.664719e-02	ci right 2.893723e-02	k: 2222	n:80000
Cons ci ratio: 1.276529e-01	ci left: 1.090583e-02	ci right 1.240490e-02	k: 931	n:80000
KS ci ratio: 2.209205e-02	ci left: 2.792822e-01	ci right 2.855335e-01	k: 22592	n:80000
CLSTN2   80000 perm   25 sec   (3215 perm/sec)   p_kst 2.824000e-01   p_cons 1.163750e-02   p_joint 2.777500e-02

Joint ci ratio: 7.286548e-02	ci left: 3.001915e-02	ci right 3.230009e-02	k: 2803	n:90000
Cons ci ratio: 1.199192e-01	ci left: 1.102925e-02	ci right 1.244693e-02	k: 1055	n:90000
KS ci ratio: 2.083951e-02	ci left: 2.792500e-01	ci right 2.851418e-01	k: 25397	n:90000
CLSTN2   90000 perm   28 sec   (3205 perm/sec)   p_kst 2.821889e-01   p_cons 1.172222e-02   p_joint 3.114444e-02

Joint ci ratio: 7.673921e-02	ci left: 2.445324e-02	ci right 2.641441e-02	k: 2542	n:100000
Cons ci ratio: 1.145751e-01	ci left: 1.090667e-02	ci right 1.224188e-02	k: 1156	n:100000
KS ci ratio: 1.979453e-02	ci left: 2.789034e-01	ci right 2.844893e-01	k: 28169	n:100000
CLSTN2   100000 perm   31 sec   (3189 perm/sec)   p_kst 2.816900e-01   p_cons 1.156000e-02   p_joint 2.542000e-02

Joint ci ratio: 6.412628e-02	ci left: 3.179998e-02	ci right 3.391566e-02	k: 3613	n:110000
Cons ci ratio: 1.093605e-01	ci left: 1.091367e-02	ci right 1.218501e-02	k: 1269	n:110000
KS ci ratio: 1.887377e-02	ci left: 2.790248e-01	ci right 2.843503e-01	k: 30985	n:110000
CLSTN2   110000 perm   35 sec   (3168 perm/sec)   p_kst 2.816818e-01   p_cons 1.153636e-02   p_joint 3.284545e-02

Joint ci ratio: 6.645931e-02	ci left: 2.723782e-02	ci right 2.911841e-02	k: 3380	n:120000
Cons ci ratio: 1.046457e-01	ci left: 1.095312e-02	ci right 1.217066e-02	k: 1386	n:120000
KS ci ratio: 1.807581e-02	ci left: 2.790148e-01	ci right 2.841125e-01	k: 33787	n:120000
CLSTN2   120000 perm   38 sec   (3144 perm/sec)   p_kst 2.815583e-01   p_cons 1.155000e-02   p_joint 2.816667e-02

Joint ci ratio: 6.584675e-02	ci left: 2.566390e-02	ci right 2.741885e-02	k: 3449	n:130000
Cons ci ratio: 1.020837e-01	ci left: 1.064252e-02	ci right 1.179483e-02	k: 1457	n:130000
KS ci ratio: 1.734809e-02	ci left: 2.795473e-01	ci right 2.844470e-01	k: 36659	n:130000
CLSTN2   130000 perm   42 sec   (3118 perm/sec)   p_kst 2.819923e-01   p_cons 1.120769e-02   p_joint 2.653077e-02

Joint ci ratio: 6.903140e-02	ci left: 2.173651e-02	ci right 2.329764e-02	k: 3151	n:140000
Cons ci ratio: 9.802852e-02	ci left: 1.073895e-02	ci right 1.185286e-02	k: 1580	n:140000
KS ci ratio: 1.670997e-02	ci left: 2.798078e-01	ci right 2.845298e-01	k: 39503	n:140000
CLSTN2   140000 perm   45 sec   (3090 perm/sec)   p_kst 2.821643e-01   p_cons 1.128571e-02   p_joint 2.250714e-02

Outputting figure to mutsig2_images.part000000000039/CLSTN2.14_2936_140000_0.28216_0.011286_0.022507.png
                gene_name: CLSTN2
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 2 percent done.
CLIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
Cons ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
CLIP1   10000 perm   2 sec   (4491 perm/sec)   p_kst 8.991000e-01   p_cons 1.324000e-01   p_joint 4.258000e-01

Joint ci ratio: 2.975030e-02	ci left: 4.577184e-01	ci right 4.715919e-01	k: 9293	n:20000
Cons ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
KS ci ratio: 9.166301e-03	ci left: 8.972357e-01	ci right 9.055472e-01	k: 18029	n:20000
CLIP1   20000 perm   5 sec   (4120 perm/sec)   p_kst 9.014500e-01   p_cons 1.300500e-01   p_joint 4.646500e-01

Outputting figure to mutsig2_images.part000000000039/CLIP1.9_4380_20000_0.90145_0.13005_0.46465.png
                gene_name: CLIP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
CLTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
Cons ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
KS ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
CLTC   10000 perm   2 sec   (4107 perm/sec)   p_kst 5.036000e-01   p_cons 4.689000e-01   p_joint 7.131000e-01

Outputting figure to mutsig2_images.part000000000039/CLTC.9_5156_10000_0.5036_0.4689_0.7131.png
                gene_name: CLTC
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 6 percent done.
CLEC4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
Cons ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KS ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
CLEC4F   10000 perm   2 sec   (5563 perm/sec)   p_kst 3.792000e-01   p_cons 1.952000e-01   p_joint 3.666000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4F.8_1798_10000_0.3792_0.1952_0.3666.png
                gene_name: CLEC4F
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
CLTCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
Cons ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
KS ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
CLTCL1   10000 perm   2 sec   (4561 perm/sec)   p_kst 7.450000e-01   p_cons 5.130000e-01   p_joint 8.165000e-01

Outputting figure to mutsig2_images.part000000000039/CLTCL1.8_5051_10000_0.745_0.513_0.8165.png
                gene_name: CLTCL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 9 percent done.
CLINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
Cons ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
KS ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
CLINT1   10000 perm   2 sec   (5429 perm/sec)   p_kst 7.981000e-01   p_cons 7.900000e-03   p_joint 1.049000e-01

Joint ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 1.451929e-02	ci left: 7.789373e-01	ci right 7.903798e-01	k: 15694	n:20000
CLINT1   20000 perm   4 sec   (4891 perm/sec)   p_kst 7.847000e-01   p_cons 9.200000e-03   p_joint 6.265000e-02

Joint ci ratio: 9.239720e-02	ci left: 5.397893e-02	ci right 5.924068e-02	k: 1697	n:30000
Cons ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
KS ci ratio: 1.182918e-02	ci left: 7.807437e-01	ci right 7.900676e-01	k: 23563	n:30000
CLINT1   30000 perm   6 sec   (4694 perm/sec)   p_kst 7.854333e-01   p_cons 9.800000e-03   p_joint 5.656667e-02

Joint ci ratio: 7.888008e-02	ci left: 5.585168e-02	ci right 6.046272e-02	k: 2325	n:40000
Cons ci ratio: 1.940375e-01	ci left: 9.119511e-03	ci right 1.110258e-02	k: 403	n:40000
KS ci ratio: 1.021269e-02	ci left: 7.824259e-01	ci right 7.904825e-01	k: 31459	n:40000
CLINT1   40000 perm   9 sec   (4551 perm/sec)   p_kst 7.864750e-01   p_cons 1.007500e-02   p_joint 5.812500e-02

Joint ci ratio: 7.343214e-02	ci left: 5.193658e-02	ci right 5.591541e-02	k: 2695	n:50000
Cons ci ratio: 1.839553e-01	ci left: 8.171725e-03	ci right 9.846026e-03	k: 449	n:50000
KS ci ratio: 9.132188e-03	ci left: 7.829420e-01	ci right 7.901447e-01	k: 39328	n:50000
CLINT1   50000 perm   11 sec   (4450 perm/sec)   p_kst 7.865600e-01   p_cons 8.980000e-03   p_joint 5.390000e-02

Joint ci ratio: 7.268598e-02	ci left: 4.455036e-02	ci right 4.792703e-02	k: 2773	n:60000
Cons ci ratio: 1.688770e-01	ci left: 8.148032e-03	ci right 9.666708e-03	k: 533	n:60000
KS ci ratio: 8.321440e-03	ci left: 7.838694e-01	ci right 7.904362e-01	k: 47230	n:60000
CLINT1   60000 perm   14 sec   (4359 perm/sec)   p_kst 7.871667e-01   p_cons 8.883333e-03   p_joint 4.621667e-02

Joint ci ratio: 6.890965e-02	ci left: 4.266105e-02	ci right 4.571974e-02	k: 3092	n:70000
Cons ci ratio: 1.559715e-01	ci left: 8.244988e-03	ci right 9.653312e-03	k: 625	n:70000
KS ci ratio: 7.721448e-03	ci left: 7.833592e-01	ci right 7.894456e-01	k: 55049	n:70000
CLINT1   70000 perm   16 sec   (4275 perm/sec)   p_kst 7.864143e-01   p_cons 8.928571e-03   p_joint 4.417143e-02

Joint ci ratio: 5.565637e-02	ci left: 5.676015e-02	ci right 6.002196e-02	k: 4670	n:80000
Cons ci ratio: 1.460453e-01	ci left: 8.272841e-03	ci right 9.588143e-03	k: 713	n:80000
KS ci ratio: 7.208812e-03	ci left: 7.842090e-01	ci right 7.898951e-01	k: 62965	n:80000
CLINT1   80000 perm   19 sec   (4194 perm/sec)   p_kst 7.870625e-01   p_cons 8.912500e-03   p_joint 5.837500e-02

Joint ci ratio: 5.463698e-02	ci left: 5.261996e-02	ci right 5.558664e-02	k: 4868	n:90000
Cons ci ratio: 1.384998e-01	ci left: 8.210879e-03	ci right 9.443314e-03	k: 793	n:90000
KS ci ratio: 6.798249e-03	ci left: 7.842880e-01	ci right 7.896490e-01	k: 70828	n:90000
CLINT1   90000 perm   22 sec   (4115 perm/sec)   p_kst 7.869778e-01   p_cons 8.811111e-03   p_joint 5.408889e-02

Joint ci ratio: 4.894370e-02	ci left: 5.880274e-02	ci right 6.176283e-02	k: 6027	n:100000
Cons ci ratio: 1.309606e-01	ci left: 8.298147e-03	ci right 9.470605e-03	k: 887	n:100000
KS ci ratio: 6.467802e-03	ci left: 7.834649e-01	ci right 7.885585e-01	k: 78602	n:100000
CLINT1   100000 perm   25 sec   (4035 perm/sec)   p_kst 7.860200e-01   p_cons 8.870000e-03   p_joint 6.027000e-02

Joint ci ratio: 4.741940e-02	ci left: 5.710225e-02	ci right 5.988473e-02	k: 6433	n:110000
Cons ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
KS ci ratio: 6.164840e-03	ci left: 7.836921e-01	ci right 7.885474e-01	k: 86474	n:110000
CLINT1   110000 perm   28 sec   (3965 perm/sec)   p_kst 7.861273e-01   p_cons 8.863636e-03   p_joint 5.848182e-02

Joint ci ratio: 4.691729e-02	ci left: 5.368374e-02	ci right 5.627115e-02	k: 6596	n:120000
Cons ci ratio: 1.202697e-01	ci left: 8.246971e-03	ci right 9.310306e-03	k: 1052	n:120000
KS ci ratio: 5.901254e-03	ci left: 7.838609e-01	ci right 7.885086e-01	k: 94343	n:120000
CLINT1   120000 perm   31 sec   (3903 perm/sec)   p_kst 7.861917e-01   p_cons 8.766667e-03   p_joint 5.496667e-02

Joint ci ratio: 4.540280e-02	ci left: 5.299817e-02	ci right 5.546791e-02	k: 7049	n:130000
Cons ci ratio: 1.156409e-01	ci left: 8.254613e-03	ci right 9.275173e-03	k: 1138	n:130000
KS ci ratio: 5.653900e-03	ci left: 7.848954e-01	ci right 7.893533e-01	k: 102327	n:130000
CLINT1   130000 perm   34 sec   (3840 perm/sec)   p_kst 7.871308e-01   p_cons 8.753846e-03   p_joint 5.422308e-02

Joint ci ratio: 4.609083e-02	ci left: 4.799511e-02	ci right 5.026647e-02	k: 6877	n:140000
Cons ci ratio: 1.116005e-01	ci left: 8.247946e-03	ci right 9.229706e-03	k: 1222	n:140000
KS ci ratio: 5.453727e-03	ci left: 7.846379e-01	ci right 7.889359e-01	k: 110151	n:140000
CLINT1   140000 perm   37 sec   (3781 perm/sec)   p_kst 7.867929e-01   p_cons 8.728571e-03   p_joint 4.912143e-02

Joint ci ratio: 4.464049e-02	ci left: 4.780084e-02	ci right 4.998998e-02	k: 7333	n:150000
Cons ci ratio: 1.075829e-01	ci left: 8.301102e-03	ci right 9.251365e-03	k: 1315	n:150000
KS ci ratio: 5.273713e-03	ci left: 7.843973e-01	ci right 7.885516e-01	k: 117972	n:150000
CLINT1   150000 perm   40 sec   (3720 perm/sec)   p_kst 7.864800e-01   p_cons 8.766667e-03   p_joint 4.888667e-02

Joint ci ratio: 4.460390e-02	ci left: 4.502194e-02	ci right 4.708205e-02	k: 7367	n:160000
Cons ci ratio: 1.037475e-01	ci left: 8.384701e-03	ci right 9.308228e-03	k: 1414	n:160000
KS ci ratio: 5.098819e-03	ci left: 7.849542e-01	ci right 7.889729e-01	k: 125915	n:160000
CLINT1   160000 perm   44 sec   (3664 perm/sec)   p_kst 7.869687e-01   p_cons 8.837500e-03   p_joint 4.604375e-02

Joint ci ratio: 4.339285e-02	ci left: 4.481106e-02	ci right 4.680446e-02	k: 7786	n:170000
Cons ci ratio: 1.013127e-01	ci left: 8.286936e-03	ci right 9.176998e-03	k: 1483	n:170000
KS ci ratio: 4.951499e-03	ci left: 7.846800e-01	ci right 7.885808e-01	k: 133728	n:170000
CLINT1   170000 perm   47 sec   (3612 perm/sec)   p_kst 7.866353e-01   p_cons 8.723529e-03   p_joint 4.580000e-02

Joint ci ratio: 4.203968e-02	ci left: 4.510828e-02	ci right 4.705081e-02	k: 8293	n:180000
Cons ci ratio: 9.834136e-02	ci left: 8.319492e-03	ci right 9.185330e-03	k: 1574	n:180000
KS ci ratio: 4.815126e-03	ci left: 7.845160e-01	ci right 7.883081e-01	k: 141555	n:180000
CLINT1   180000 perm   51 sec   (3560 perm/sec)   p_kst 7.864167e-01   p_cons 8.744444e-03   p_joint 4.607222e-02

Outputting figure to mutsig2_images.part000000000039/CLINT1.7_1926_180000_0.78642_0.0087444_0.046072.png
                gene_name: CLINT1
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.0087 
      ci_cons_bounds_left: 0.0083 
     ci_cons_bounds_right: 0.0092 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.047 

Current progress: 11 percent done.
CLIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
CLIP2   10000 perm   2 sec   (4885 perm/sec)   p_kst 4.500000e-03   p_cons 9.100000e-03   p_joint 9.800000e-03

Joint ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
Cons ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
KS ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
CLIP2   20000 perm   5 sec   (4404 perm/sec)   p_kst 4.250000e-03   p_cons 8.300000e-03   p_joint 3.100000e-03

Joint ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
Cons ci ratio: 2.406518e-01	ci left: 7.711591e-03	ci right 9.851836e-03	k: 262	n:30000
KS ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
CLIP2   30000 perm   7 sec   (4230 perm/sec)   p_kst 4.966667e-03   p_cons 8.733333e-03   p_joint 1.600000e-03

Joint ci ratio: 4.784970e-01	ci left: 1.276333e-03	ci right 2.098733e-03	k: 66	n:40000
Cons ci ratio: 2.168913e-01	ci left: 7.221300e-03	ci right 9.001222e-03	k: 323	n:40000
KS ci ratio: 2.757965e-01	ci left: 4.332419e-03	ci right 5.740914e-03	k: 200	n:40000
CLIP2   40000 perm   10 sec   (4118 perm/sec)   p_kst 5.000000e-03   p_cons 8.075000e-03   p_joint 1.650000e-03

Joint ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
Cons ci ratio: 1.897871e-01	ci left: 7.656790e-03	ci right 9.281053e-03	k: 422	n:50000
KS ci ratio: 2.448507e-01	ci left: 4.475732e-03	ci right 5.742774e-03	k: 254	n:50000
CLIP2   50000 perm   12 sec   (4013 perm/sec)   p_kst 5.080000e-03   p_cons 8.440000e-03   p_joint 2.860000e-03

Joint ci ratio: 3.196637e-01	ci left: 2.100991e-03	ci right 2.914990e-03	k: 149	n:60000
Cons ci ratio: 1.747506e-01	ci left: 7.589587e-03	ci right 9.058568e-03	k: 498	n:60000
KS ci ratio: 2.182052e-01	ci left: 4.766244e-03	ci right 5.949044e-03	k: 320	n:60000
CLIP2   60000 perm   15 sec   (3930 perm/sec)   p_kst 5.333333e-03   p_cons 8.300000e-03   p_joint 2.483333e-03

Joint ci ratio: 2.901897e-01	ci left: 2.223115e-03	ci right 2.990471e-03	k: 181	n:70000
Cons ci ratio: 1.598833e-01	ci left: 7.833220e-03	ci right 9.207987e-03	k: 595	n:70000
KS ci ratio: 1.989705e-01	ci left: 4.965560e-03	ci right 6.076034e-03	k: 385	n:70000
CLIP2   70000 perm   18 sec   (3857 perm/sec)   p_kst 5.500000e-03   p_cons 8.500000e-03   p_joint 2.585714e-03

Joint ci ratio: 2.902372e-01	ci left: 1.945183e-03	ci right 2.616728e-03	k: 181	n:80000
Cons ci ratio: 1.503544e-01	ci left: 7.791233e-03	ci right 9.069800e-03	k: 673	n:80000
KS ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
CLIP2   80000 perm   21 sec   (3791 perm/sec)   p_kst 5.462500e-03   p_cons 8.412500e-03   p_joint 2.262500e-03

Joint ci ratio: 2.811346e-01	ci left: 1.852821e-03	ci right 2.468861e-03	k: 193	n:90000
Cons ci ratio: 1.416850e-01	ci left: 7.835513e-03	ci right 9.040937e-03	k: 758	n:90000
KS ci ratio: 1.751718e-01	ci left: 5.048509e-03	ci right 6.028220e-03	k: 497	n:90000
CLIP2   90000 perm   24 sec   (3730 perm/sec)   p_kst 5.522222e-03   p_cons 8.422222e-03   p_joint 2.144444e-03

Joint ci ratio: 2.658167e-01	ci left: 1.881783e-03	ci right 2.467692e-03	k: 216	n:100000
Cons ci ratio: 1.336439e-01	ci left: 7.959639e-03	ci right 9.109141e-03	k: 852	n:100000
KS ci ratio: 1.638659e-01	ci left: 5.223600e-03	ci right 6.165419e-03	k: 568	n:100000
CLIP2   100000 perm   27 sec   (3672 perm/sec)   p_kst 5.680000e-03   p_cons 8.520000e-03   p_joint 2.160000e-03

Joint ci ratio: 2.708931e-01	ci left: 1.642849e-03	ci right 2.165791e-03	k: 208	n:110000
Cons ci ratio: 1.272400e-01	ci left: 8.009951e-03	ci right 9.107105e-03	k: 940	n:110000
KS ci ratio: 1.561022e-01	ci left: 5.254905e-03	ci right 6.153277e-03	k: 626	n:110000
CLIP2   110000 perm   30 sec   (3615 perm/sec)   p_kst 5.690909e-03   p_cons 8.545455e-03   p_joint 1.890909e-03

Joint ci ratio: 2.728837e-01	ci left: 1.482631e-03	ci right 1.958635e-03	k: 205	n:120000
Cons ci ratio: 1.217361e-01	ci left: 8.044893e-03	ci right 9.095731e-03	k: 1027	n:120000
KS ci ratio: 1.490190e-01	ci left: 5.305941e-03	ci right 6.168209e-03	k: 687	n:120000
CLIP2   120000 perm   34 sec   (3562 perm/sec)   p_kst 5.725000e-03   p_cons 8.558333e-03   p_joint 1.708333e-03

Joint ci ratio: 1.557971e-01	ci left: 4.468491e-03	ci right 5.230777e-03	k: 629	n:130000
Cons ci ratio: 1.173150e-01	ci left: 8.015573e-03	ci right 9.021919e-03	k: 1106	n:130000
KS ci ratio: 1.431085e-01	ci left: 5.327648e-03	ci right 6.156171e-03	k: 745	n:130000
CLIP2   130000 perm   37 sec   (3511 perm/sec)   p_kst 5.730769e-03   p_cons 8.507692e-03   p_joint 4.838462e-03

Joint ci ratio: 1.500700e-01	ci left: 4.485925e-03	ci right 5.220528e-03	k: 678	n:140000
Cons ci ratio: 1.131987e-01	ci left: 8.011862e-03	ci right 8.980089e-03	k: 1188	n:140000
KS ci ratio: 1.384572e-01	ci left: 5.298552e-03	ci right 6.093560e-03	k: 796	n:140000
CLIP2   140000 perm   40 sec   (3460 perm/sec)   p_kst 5.685714e-03   p_cons 8.485714e-03   p_joint 4.842857e-03

Joint ci ratio: 1.527147e-01	ci left: 4.039266e-03	ci right 4.713446e-03	k: 655	n:150000
Cons ci ratio: 1.097489e-01	ci left: 7.970268e-03	ci right 8.902216e-03	k: 1264	n:150000
KS ci ratio: 1.346316e-01	ci left: 5.241496e-03	ci right 6.004471e-03	k: 842	n:150000
CLIP2   150000 perm   44 sec   (3411 perm/sec)   p_kst 5.613333e-03   p_cons 8.426667e-03   p_joint 4.366667e-03

Joint ci ratio: 1.857761e-01	ci left: 2.517201e-03	ci right 3.038576e-03	k: 443	n:160000
Cons ci ratio: 1.066365e-01	ci left: 7.928183e-03	ci right 8.827268e-03	k: 1339	n:160000
KS ci ratio: 1.303711e-01	ci left: 5.252304e-03	ci right 5.990784e-03	k: 898	n:160000
CLIP2   160000 perm   48 sec   (3365 perm/sec)   p_kst 5.612500e-03   p_cons 8.368750e-03   p_joint 2.768750e-03

Joint ci ratio: 1.957687e-01	ci left: 2.122617e-03	ci right 2.588732e-03	k: 399	n:170000
Cons ci ratio: 1.034802e-01	ci left: 7.937228e-03	ci right 8.809075e-03	k: 1422	n:170000
KS ci ratio: 1.253737e-01	ci left: 5.359041e-03	ci right 6.081501e-03	k: 971	n:170000
CLIP2   170000 perm   51 sec   (3320 perm/sec)   p_kst 5.711765e-03   p_cons 8.364706e-03   p_joint 2.347059e-03

Joint ci ratio: 1.926686e-01	ci left: 2.073399e-03	ci right 2.520650e-03	k: 412	n:180000
Cons ci ratio: 1.007911e-01	ci left: 7.913116e-03	ci right 8.758389e-03	k: 1499	n:180000
KS ci ratio: 1.214961e-01	ci left: 5.400518e-03	ci right 6.104433e-03	k: 1034	n:180000
CLIP2   180000 perm   55 sec   (3276 perm/sec)   p_kst 5.744444e-03   p_cons 8.327778e-03   p_joint 2.288889e-03

Joint ci ratio: 1.912928e-01	ci left: 1.994326e-03	ci right 2.421090e-03	k: 418	n:190000
Cons ci ratio: 9.774038e-02	ci left: 7.984238e-03	ci right 8.809814e-03	k: 1594	n:190000
KS ci ratio: 1.189974e-01	ci left: 5.340884e-03	ci right 6.021700e-03	k: 1078	n:190000
CLIP2   190000 perm   59 sec   (3234 perm/sec)   p_kst 5.673684e-03   p_cons 8.389474e-03   p_joint 2.200000e-03

Joint ci ratio: 1.892770e-01	ci left: 1.937460e-03	ci right 2.347184e-03	k: 427	n:200000
Cons ci ratio: 9.500758e-02	ci left: 8.038829e-03	ci right 8.845515e-03	k: 1687	n:200000
KS ci ratio: 1.161794e-01	ci left: 5.331043e-03	ci right 5.993408e-03	k: 1131	n:200000
CLIP2   200000 perm   63 sec   (3194 perm/sec)   p_kst 5.655000e-03   p_cons 8.435000e-03   p_joint 2.135000e-03

Joint ci ratio: 1.334745e-01	ci left: 3.817373e-03	ci right 4.367883e-03	k: 858	n:210000
Cons ci ratio: 9.257055e-02	ci left: 8.074554e-03	ci right 8.862914e-03	k: 1777	n:210000
KS ci ratio: 1.137943e-01	ci left: 5.299176e-03	ci right 5.943157e-03	k: 1179	n:210000
CLIP2   210000 perm   68 sec   (3096 perm/sec)   p_kst 5.614286e-03   p_cons 8.461905e-03   p_joint 4.085714e-03

Joint ci ratio: 1.304716e-01	ci left: 3.819672e-03	ci right 4.357160e-03	k: 898	n:220000
Cons ci ratio: 9.102726e-02	ci left: 7.978417e-03	ci right 8.743712e-03	k: 1838	n:220000
KS ci ratio: 1.109162e-01	ci left: 5.332208e-03	ci right 5.962742e-03	k: 1241	n:220000
CLIP2   220000 perm   72 sec   (3057 perm/sec)   p_kst 5.640909e-03   p_cons 8.354545e-03   p_joint 4.081818e-03

Joint ci ratio: 1.283508e-01	ci left: 3.779806e-03	ci right 4.302380e-03	k: 928	n:230000
Cons ci ratio: 8.922767e-02	ci left: 7.950261e-03	ci right 8.696992e-03	k: 1913	n:230000
KS ci ratio: 1.083295e-01	ci left: 5.354093e-03	ci right 5.971508e-03	k: 1301	n:230000
CLIP2   230000 perm   77 sec   (2991 perm/sec)   p_kst 5.656522e-03   p_cons 8.317391e-03   p_joint 4.034783e-03

Joint ci ratio: 1.270637e-01	ci left: 3.698942e-03	ci right 4.204821e-03	k: 947	n:240000
Cons ci ratio: 8.739793e-02	ci left: 7.949046e-03	ci right 8.679570e-03	k: 1994	n:240000
KS ci ratio: 1.060333e-01	ci left: 5.362140e-03	ci right 5.966559e-03	k: 1358	n:240000
CLIP2   240000 perm   82 sec   (2931 perm/sec)   p_kst 5.658333e-03   p_cons 8.308333e-03   p_joint 3.945833e-03

Joint ci ratio: 1.256840e-01	ci left: 3.632321e-03	ci right 4.123292e-03	k: 968	n:250000
Cons ci ratio: 8.573881e-02	ci left: 7.936327e-03	ci right 8.651143e-03	k: 2072	n:250000
KS ci ratio: 1.038035e-01	ci left: 5.377464e-03	ci right 5.970085e-03	k: 1417	n:250000
CLIP2   250000 perm   86 sec   (2902 perm/sec)   p_kst 5.668000e-03   p_cons 8.288000e-03   p_joint 3.872000e-03

Joint ci ratio: 1.219597e-01	ci left: 3.716248e-03	ci right 4.202605e-03	k: 1028	n:260000
Cons ci ratio: 8.395454e-02	ci left: 7.966133e-03	ci right 8.667970e-03	k: 2161	n:260000
KS ci ratio: 1.013299e-01	ci left: 5.432971e-03	ci right 6.016592e-03	k: 1487	n:260000
CLIP2   260000 perm   90 sec   (2874 perm/sec)   p_kst 5.719231e-03   p_cons 8.311538e-03   p_joint 3.953846e-03

Joint ci ratio: 1.297989e-01	ci left: 3.148085e-03	ci right 3.588607e-03	k: 908	n:270000
Cons ci ratio: 8.255504e-02	ci left: 7.939455e-03	ci right 8.626719e-03	k: 2235	n:270000
KS ci ratio: 9.908900e-02	ci left: 5.477296e-03	ci right 6.051910e-03	k: 1555	n:270000
CLIP2   270000 perm   95 sec   (2843 perm/sec)   p_kst 5.759259e-03   p_cons 8.277778e-03   p_joint 3.362963e-03

Joint ci ratio: 1.051857e-01	ci left: 4.676007e-03	ci right 5.198607e-03	k: 1381	n:280000
Cons ci ratio: 8.080109e-02	ci left: 7.998763e-03	ci right 8.675758e-03	k: 2333	n:280000
KS ci ratio: 9.660235e-02	ci left: 5.563897e-03	ci right 6.132119e-03	k: 1636	n:280000
CLIP2   280000 perm   100 sec   (2812 perm/sec)   p_kst 5.842857e-03   p_cons 8.332143e-03   p_joint 4.932143e-03

Joint ci ratio: 9.437681e-02	ci left: 5.634590e-03	ci right 6.196042e-03	k: 1714	n:290000
Cons ci ratio: 7.963457e-02	ci left: 7.956095e-03	ci right 8.619305e-03	k: 2402	n:290000
KS ci ratio: 9.482279e-02	ci left: 5.580716e-03	ci right 6.139573e-03	k: 1698	n:290000
CLIP2   290000 perm   106 sec   (2735 perm/sec)   p_kst 5.855172e-03   p_cons 8.282759e-03   p_joint 5.910345e-03

Outputting figure to mutsig2_images.part000000000039/CLIP2.7_3205_290000_0.0058552_0.0082828_0.0059103.png
                gene_name: CLIP2
               theta_stop: 0.095 
                    nperm: 290000 
                     p_ks: 0.0059 
        ci_ks_bounds_left: 0.0056 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.0083 
      ci_cons_bounds_left: 0.0080 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0056 
    ci_joint_bounds_right: 0.0062 

Current progress: 13 percent done.
CLSPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
CLSPN   10000 perm   2 sec   (4933 perm/sec)   p_kst 1.337000e-01   p_cons 4.698000e-01   p_joint 2.624000e-01

Outputting figure to mutsig2_images.part000000000039/CLSPN.7_4120_10000_0.1337_0.4698_0.2624.png
                gene_name: CLSPN
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 15 percent done.
CLEC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
Cons ci ratio: 4.960770e-02	ci left: 3.747510e-01	ci right 3.939164e-01	k: 3843	n:10000
KS ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
CLEC1B   10000 perm   2 sec   (5196 perm/sec)   p_kst 1.477000e-01   p_cons 3.843000e-01   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1B.6_714_10000_0.1477_0.3843_0.1865.png
                gene_name: CLEC1B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 17 percent done.
CLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
Cons ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
KS ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
CLK2   10000 perm   3 sec   (3463 perm/sec)   p_kst 3.639000e-01   p_cons 9.701000e-01   p_joint 5.220000e-01

Outputting figure to mutsig2_images.part000000000039/CLK2.6_1545_10000_0.3639_0.9701_0.522.png
                gene_name: CLK2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 19 percent done.
CLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
Cons ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
CLK4   10000 perm   3 sec   (3422 perm/sec)   p_kst 2.809000e-01   p_cons 6.711000e-01   p_joint 3.774000e-01

Outputting figure to mutsig2_images.part000000000039/CLK4.6_1494_10000_0.2809_0.6711_0.3774.png
                gene_name: CLK4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
CLU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
Cons ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
KS ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
CLU   10000 perm   2 sec   (5312 perm/sec)   p_kst 4.370000e-01   p_cons 8.983000e-01   p_joint 6.005000e-01

Outputting figure to mutsig2_images.part000000000039/CLU.6_1550_10000_0.437_0.8983_0.6005.png
                gene_name: CLU
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 23 percent done.
CLDN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
KS ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
CLDN8   10000 perm   2 sec   (6346 perm/sec)   p_kst 3.587000e-01   p_cons 5.200000e-03   p_joint 3.730000e-02

Joint ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
Cons ci ratio: 4.033559e-01	ci left: 3.754742e-03	ci right 5.693581e-03	k: 93	n:20000
KS ci ratio: 3.707078e-02	ci left: 3.518995e-01	ci right 3.652416e-01	k: 7171	n:20000
CLDN8   20000 perm   4 sec   (5645 perm/sec)   p_kst 3.585500e-01   p_cons 4.650000e-03   p_joint 3.430000e-02

Joint ci ratio: 1.177366e-01	ci left: 3.353168e-02	ci right 3.775886e-02	k: 1068	n:30000
Cons ci ratio: 3.317134e-01	ci left: 3.865922e-03	ci right 5.432388e-03	k: 138	n:30000
KS ci ratio: 3.030545e-02	ci left: 3.525723e-01	ci right 3.634552e-01	k: 10740	n:30000
CLDN8   30000 perm   6 sec   (5367 perm/sec)   p_kst 3.580000e-01   p_cons 4.600000e-03   p_joint 3.560000e-02

Joint ci ratio: 9.369455e-02	ci left: 3.995732e-02	ci right 4.390953e-02	k: 1676	n:40000
Cons ci ratio: 2.859844e-01	ci left: 4.006968e-03	ci right 5.366478e-03	k: 186	n:40000
KS ci ratio: 2.634597e-02	ci left: 3.515550e-01	ci right 3.609658e-01	k: 14250	n:40000
CLDN8   40000 perm   8 sec   (5197 perm/sec)   p_kst 3.562500e-01   p_cons 4.650000e-03   p_joint 4.190000e-02

Joint ci ratio: 8.746584e-02	ci left: 3.692830e-02	ci right 4.032553e-02	k: 1930	n:50000
Cons ci ratio: 2.410786e-01	ci left: 4.626033e-03	ci right 5.912435e-03	k: 262	n:50000
KS ci ratio: 2.344252e-02	ci left: 3.544345e-01	ci right 3.628619e-01	k: 17932	n:50000
CLDN8   50000 perm   10 sec   (5065 perm/sec)   p_kst 3.586400e-01   p_cons 5.240000e-03   p_joint 3.860000e-02

Joint ci ratio: 8.959655e-02	ci left: 2.952976e-02	ci right 3.231586e-02	k: 1854	n:60000
Cons ci ratio: 2.171872e-01	ci left: 4.813530e-03	ci right 6.001748e-03	k: 323	n:60000
KS ci ratio: 2.134475e-02	ci left: 3.559915e-01	ci right 3.636887e-01	k: 21590	n:60000
CLDN8   60000 perm   12 sec   (4954 perm/sec)   p_kst 3.598333e-01   p_cons 5.383333e-03   p_joint 3.090000e-02

Joint ci ratio: 8.872548e-02	ci left: 2.592360e-02	ci right 2.834438e-02	k: 1898	n:70000
Cons ci ratio: 1.984541e-01	ci left: 4.992717e-03	ci right 6.106016e-03	k: 387	n:70000
KS ci ratio: 1.976660e-02	ci left: 3.561578e-01	ci right 3.632824e-01	k: 25180	n:70000
CLDN8   70000 perm   14 sec   (4851 perm/sec)   p_kst 3.597143e-01   p_cons 5.528571e-03   p_joint 2.711429e-02

Joint ci ratio: 7.292121e-02	ci left: 3.358977e-02	ci right 3.614411e-02	k: 2788	n:80000
Cons ci ratio: 1.848898e-01	ci left: 5.070792e-03	ci right 6.115554e-03	k: 446	n:80000
KS ci ratio: 1.845103e-02	ci left: 3.573588e-01	ci right 3.640263e-01	k: 28855	n:80000
CLDN8   80000 perm   17 sec   (4746 perm/sec)   p_kst 3.606875e-01   p_cons 5.575000e-03   p_joint 3.485000e-02

Joint ci ratio: 7.172491e-02	ci left: 3.096888e-02	ci right 3.328363e-02	k: 2890	n:90000
Cons ci ratio: 1.758835e-01	ci left: 5.006007e-03	ci right 5.981837e-03	k: 493	n:90000
KS ci ratio: 1.741216e-02	ci left: 3.571181e-01	ci right 3.634020e-01	k: 32423	n:90000
CLDN8   90000 perm   19 sec   (4658 perm/sec)   p_kst 3.602556e-01   p_cons 5.477778e-03   p_joint 3.211111e-02

Joint ci ratio: 6.384333e-02	ci left: 3.516892e-02	ci right 3.749807e-02	k: 3632	n:100000
Cons ci ratio: 1.680766e-01	ci left: 4.955171e-03	ci right 5.873875e-03	k: 540	n:100000
KS ci ratio: 1.595294e-02	ci left: 3.734657e-01	ci right 3.794815e-01	k: 37647	n:100000
CLDN8   100000 perm   22 sec   (4573 perm/sec)   p_kst 3.764700e-01   p_cons 5.400000e-03   p_joint 3.632000e-02

Joint ci ratio: 5.738766e-02	ci left: 3.952196e-02	ci right 4.186597e-02	k: 4475	n:110000
Cons ci ratio: 1.621982e-01	ci left: 4.853290e-03	ci right 5.718563e-03	k: 580	n:110000
KS ci ratio: 1.521077e-02	ci left: 3.735992e-01	ci right 3.793346e-01	k: 41411	n:110000
CLDN8   110000 perm   24 sec   (4493 perm/sec)   p_kst 3.764636e-01   p_cons 5.272727e-03   p_joint 4.068182e-02

Joint ci ratio: 5.476884e-02	ci left: 3.981923e-02	ci right 4.206969e-02	k: 4912	n:120000
Cons ci ratio: 1.560145e-01	ci left: 4.824919e-03	ci right 5.649269e-03	k: 627	n:120000
KS ci ratio: 1.459290e-02	ci left: 3.727673e-01	ci right 3.782554e-01	k: 45061	n:120000
CLDN8   120000 perm   27 sec   (4414 perm/sec)   p_kst 3.755083e-01   p_cons 5.225000e-03   p_joint 4.093333e-02

Joint ci ratio: 5.407983e-02	ci left: 3.779463e-02	ci right 3.990293e-02	k: 5049	n:130000
Cons ci ratio: 1.495995e-01	ci left: 4.860682e-03	ci right 5.653940e-03	k: 682	n:130000
KS ci ratio: 1.402849e-02	ci left: 3.726054e-01	ci right 3.778771e-01	k: 48781	n:130000
CLDN8   130000 perm   30 sec   (4330 perm/sec)   p_kst 3.752385e-01   p_cons 5.246154e-03   p_joint 3.883846e-02

Joint ci ratio: 4.812737e-02	ci left: 4.415296e-02	ci right 4.633735e-02	k: 6333	n:140000
Cons ci ratio: 1.445076e-01	ci left: 4.850613e-03	ci right 5.612957e-03	k: 731	n:140000
KS ci ratio: 1.354118e-02	ci left: 3.719067e-01	ci right 3.769842e-01	k: 52422	n:140000
CLDN8   140000 perm   33 sec   (4256 perm/sec)   p_kst 3.744429e-01   p_cons 5.221429e-03   p_joint 4.523571e-02

Joint ci ratio: 4.895458e-02	ci left: 3.998890e-02	ci right 4.200222e-02	k: 6148	n:150000
Cons ci ratio: 1.380490e-01	ci left: 4.977438e-03	ci right 5.721879e-03	k: 801	n:150000
KS ci ratio: 1.308807e-02	ci left: 3.717768e-01	ci right 3.766814e-01	k: 56134	n:150000
CLDN8   150000 perm   36 sec   (4184 perm/sec)   p_kst 3.742267e-01   p_cons 5.340000e-03   p_joint 4.098667e-02

Joint ci ratio: 4.712702e-02	ci left: 4.047232e-02	ci right 4.243184e-02	k: 6631	n:160000
Cons ci ratio: 1.327686e-01	ci left: 5.058853e-03	ci right 5.784246e-03	k: 866	n:160000
KS ci ratio: 1.266577e-02	ci left: 3.721027e-01	ci right 3.768519e-01	k: 59916	n:160000
CLDN8   160000 perm   39 sec   (4117 perm/sec)   p_kst 3.744750e-01   p_cons 5.412500e-03   p_joint 4.144375e-02

Joint ci ratio: 4.668020e-02	ci left: 3.889890e-02	ci right 4.076389e-02	k: 6770	n:170000
Cons ci ratio: 1.290998e-01	ci left: 5.045755e-03	ci right 5.747745e-03	k: 916	n:170000
KS ci ratio: 1.228140e-02	ci left: 3.724100e-01	ci right 3.770178e-01	k: 63701	n:170000
CLDN8   170000 perm   42 sec   (4052 perm/sec)   p_kst 3.747118e-01   p_cons 5.388235e-03   p_joint 3.982353e-02

Joint ci ratio: 4.634069e-02	ci left: 3.734664e-02	ci right 3.912383e-02	k: 6881	n:180000
Cons ci ratio: 1.257847e-01	ci left: 5.028977e-03	ci right 5.709326e-03	k: 965	n:180000
KS ci ratio: 1.194276e-02	ci left: 3.721857e-01	ci right 3.766628e-01	k: 67396	n:180000
CLDN8   180000 perm   45 sec   (3984 perm/sec)   p_kst 3.744222e-01   p_cons 5.361111e-03   p_joint 3.822778e-02

Joint ci ratio: 4.558757e-02	ci left: 3.660333e-02	ci right 3.831609e-02	k: 7116	n:190000
Cons ci ratio: 1.267959e-01	ci left: 4.687788e-03	ci right 5.327458e-03	k: 950	n:190000
KS ci ratio: 1.162792e-02	ci left: 3.720970e-01	ci right 3.764542e-01	k: 71112	n:190000
CLDN8   190000 perm   48 sec   (3922 perm/sec)   p_kst 3.742737e-01   p_cons 5.000000e-03   p_joint 3.745263e-02

Joint ci ratio: 4.613501e-02	ci left: 3.403564e-02	ci right 3.564787e-02	k: 6967	n:200000
Cons ci ratio: 1.234029e-01	ci left: 4.710109e-03	ci right 5.334370e-03	k: 1003	n:200000
KS ci ratio: 1.133166e-02	ci left: 3.722283e-01	ci right 3.764753e-01	k: 74870	n:200000
CLDN8   200000 perm   52 sec   (3863 perm/sec)   p_kst 3.743500e-01   p_cons 5.015000e-03   p_joint 3.483500e-02

Joint ci ratio: 4.671831e-02	ci left: 3.167975e-02	ci right 3.319986e-02	k: 6811	n:210000
Cons ci ratio: 1.209605e-01	ci left: 4.675084e-03	ci right 5.281561e-03	k: 1044	n:210000
KS ci ratio: 1.105908e-02	ci left: 3.722581e-01	ci right 3.764025e-01	k: 78609	n:210000
CLDN8   210000 perm   55 sec   (3806 perm/sec)   p_kst 3.743286e-01   p_cons 4.971429e-03   p_joint 3.243333e-02

Joint ci ratio: 4.598960e-02	ci left: 3.123250e-02	ci right 3.270714e-02	k: 7032	n:220000
Cons ci ratio: 1.180582e-01	ci left: 4.691881e-03	ci right 5.284913e-03	k: 1096	n:220000
KS ci ratio: 1.080233e-02	ci left: 3.724134e-01	ci right 3.764627e-01	k: 82376	n:220000
CLDN8   220000 perm   59 sec   (3749 perm/sec)   p_kst 3.744364e-01   p_cons 4.981818e-03   p_joint 3.196364e-02

Joint ci ratio: 4.423129e-02	ci left: 3.229087e-02	ci right 3.375571e-02	k: 7594	n:230000
Cons ci ratio: 1.152043e-01	ci left: 4.720044e-03	ci right 5.301233e-03	k: 1151	n:230000
KS ci ratio: 1.056150e-02	ci left: 3.726083e-01	ci right 3.765688e-01	k: 86155	n:230000
CLDN8   230000 perm   62 sec   (3696 perm/sec)   p_kst 3.745870e-01   p_cons 5.004348e-03   p_joint 3.301739e-02

Joint ci ratio: 4.263743e-02	ci left: 3.329499e-02	ci right 3.474963e-02	k: 8164	n:240000
Cons ci ratio: 1.128299e-01	ci left: 4.721720e-03	ci right 5.290335e-03	k: 1200	n:240000
KS ci ratio: 1.034565e-02	ci left: 3.723550e-01	ci right 3.762314e-01	k: 89830	n:240000
CLDN8   240000 perm   66 sec   (3642 perm/sec)   p_kst 3.742917e-01   p_cons 5.000000e-03   p_joint 3.401667e-02

Joint ci ratio: 4.222835e-02	ci left: 3.261594e-02	ci right 3.402690e-02	k: 8329	n:250000
Cons ci ratio: 1.106856e-01	ci left: 4.715595e-03	ci right 5.271976e-03	k: 1247	n:250000
KS ci ratio: 1.013264e-02	ci left: 3.725783e-01	ci right 3.763766e-01	k: 93619	n:250000
CLDN8   250000 perm   70 sec   (3590 perm/sec)   p_kst 3.744760e-01   p_cons 4.988000e-03   p_joint 3.331600e-02

Joint ci ratio: 3.982167e-02	ci left: 3.521481e-02	ci right 3.664940e-02	k: 9341	n:260000
Cons ci ratio: 1.087013e-01	ci left: 4.706294e-03	ci right 5.250985e-03	k: 1293	n:260000
KS ci ratio: 9.934955e-03	ci left: 3.726583e-01	ci right 3.763829e-01	k: 97375	n:260000
CLDN8   260000 perm   73 sec   (3540 perm/sec)   p_kst 3.745192e-01   p_cons 4.973077e-03   p_joint 3.592692e-02

Joint ci ratio: 4.014386e-02	ci left: 3.342593e-02	ci right 3.479891e-02	k: 9209	n:270000
Cons ci ratio: 1.064613e-01	ci left: 4.730212e-03	ci right 5.265683e-03	k: 1348	n:270000
KS ci ratio: 9.748255e-03	ci left: 3.727405e-01	ci right 3.763955e-01	k: 101133	n:270000
CLDN8   270000 perm   77 sec   (3492 perm/sec)   p_kst 3.745667e-01   p_cons 4.992593e-03   p_joint 3.410741e-02

Joint ci ratio: 3.831709e-02	ci left: 3.534131e-02	ci right 3.672546e-02	k: 10088	n:280000
Cons ci ratio: 1.044665e-01	ci left: 4.742093e-03	ci right 5.268233e-03	k: 1400	n:280000
KS ci ratio: 9.570531e-03	ci left: 3.728745e-01	ci right 3.764638e-01	k: 104907	n:280000
CLDN8   280000 perm   81 sec   (3441 perm/sec)   p_kst 3.746679e-01   p_cons 5.000000e-03   p_joint 3.602857e-02

Joint ci ratio: 3.736105e-02	ci left: 3.588873e-02	ci right 3.725849e-02	k: 10605	n:290000
Cons ci ratio: 1.023676e-01	ci left: 4.773403e-03	ci right 5.291737e-03	k: 1458	n:290000
KS ci ratio: 9.399143e-03	ci left: 3.731514e-01	ci right 3.766787e-01	k: 108725	n:290000
CLDN8   290000 perm   85 sec   (3395 perm/sec)   p_kst 3.749138e-01   p_cons 5.027586e-03   p_joint 3.656897e-02

Joint ci ratio: 3.605419e-02	ci left: 3.722610e-02	ci right 3.859618e-02	k: 11372	n:300000
Cons ci ratio: 1.006239e-01	ci left: 4.779975e-03	ci right 5.289658e-03	k: 1509	n:300000
KS ci ratio: 9.243081e-03	ci left: 3.730840e-01	ci right 3.765517e-01	k: 112445	n:300000
CLDN8   300000 perm   90 sec   (3350 perm/sec)   p_kst 3.748167e-01   p_cons 5.030000e-03   p_joint 3.790667e-02

Joint ci ratio: 3.592002e-02	ci left: 3.633184e-02	ci right 3.766393e-02	k: 11468	n:310000
Cons ci ratio: 9.880747e-02	ci left: 4.801925e-03	ci right 5.304170e-03	k: 1565	n:310000
KS ci ratio: 9.090411e-03	ci left: 3.732341e-01	ci right 3.766456e-01	k: 116231	n:310000
CLDN8   310000 perm   94 sec   (3306 perm/sec)   p_kst 3.749387e-01   p_cons 5.048387e-03   p_joint 3.699355e-02

Outputting figure to mutsig2_images.part000000000039/CLDN8.5_682_310000_0.37494_0.0050484_0.036994.png
                gene_name: CLDN8
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0048 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 25 percent done.
CLEC14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
CLEC14A   10000 perm   2 sec   (5600 perm/sec)   p_kst 8.320000e-02   p_cons 9.907000e-01   p_joint 1.427000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 2.792499e-03	ci left: 9.885225e-01	ci right 9.913324e-01	k: 19800	n:20000
KS ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
CLEC14A   20000 perm   4 sec   (4971 perm/sec)   p_kst 8.060000e-02   p_cons 9.900000e-01   p_joint 1.613000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC14A.5_1477_20000_0.0806_0.99_0.1613.png
                gene_name: CLEC14A
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 26 percent done.
CLMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
CLMN   10000 perm   2 sec   (5188 perm/sec)   p_kst 9.023000e-01   p_cons 3.061000e-01   p_joint 6.833000e-01

Outputting figure to mutsig2_images.part000000000039/CLMN.5_3061_10000_0.9023_0.3061_0.6833.png
                gene_name: CLMN
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 28 percent done.
CLNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
CLNK   10000 perm   2 sec   (5778 perm/sec)   p_kst 8.582000e-01   p_cons 3.950000e-02   p_joint 1.536000e-01

Joint ci ratio: 6.742984e-02	ci left: 1.396541e-01	ci right 1.494494e-01	k: 2890	n:20000
Cons ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
KS ci ratio: 1.132577e-02	ci left: 8.520207e-01	ci right 8.617752e-01	k: 17139	n:20000
CLNK   20000 perm   4 sec   (5196 perm/sec)   p_kst 8.569500e-01   p_cons 3.895000e-02   p_joint 1.445000e-01

Joint ci ratio: 4.880166e-02	ci left: 1.726628e-01	ci right 1.813331e-01	k: 5309	n:30000
Cons ci ratio: 1.121940e-01	ci left: 3.690225e-02	ci right 4.132091e-02	k: 1172	n:30000
KS ci ratio: 9.343187e-03	ci left: 8.503579e-01	ci right 8.583734e-01	k: 25632	n:30000
CLNK   30000 perm   6 sec   (4951 perm/sec)   p_kst 8.544000e-01   p_cons 3.906667e-02   p_joint 1.769667e-01

Joint ci ratio: 4.679467e-02	ci left: 1.457463e-01	ci right 1.527547e-01	k: 5969	n:40000
Cons ci ratio: 9.765156e-02	ci left: 3.683087e-02	ci right 4.063647e-02	k: 1548	n:40000
KS ci ratio: 8.065315e-03	ci left: 8.517132e-01	ci right 8.586352e-01	k: 34208	n:40000
CLNK   40000 perm   8 sec   (4798 perm/sec)   p_kst 8.552000e-01   p_cons 3.870000e-02   p_joint 1.492250e-01

Outputting figure to mutsig2_images.part000000000039/CLNK.5_1359_40000_0.8552_0.0387_0.14922.png
                gene_name: CLNK
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 30 percent done.
CLDN25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
KS ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
CLDN25   10000 perm   2 sec   (6153 perm/sec)   p_kst 6.140000e-02   p_cons 6.777000e-01   p_joint 1.422000e-01

Joint ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
Cons ci ratio: 1.925924e-02	ci left: 6.678557e-01	ci right 6.808936e-01	k: 13488	n:20000
KS ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
CLDN25   20000 perm   4 sec   (5495 perm/sec)   p_kst 5.860000e-02   p_cons 6.744000e-01   p_joint 1.128500e-01

Joint ci ratio: 5.734504e-02	ci left: 1.308885e-01	ci right 1.386490e-01	k: 4042	n:30000
Cons ci ratio: 1.560608e-02	ci left: 6.724112e-01	ci right 6.830210e-01	k: 20332	n:30000
KS ci ratio: 9.117969e-02	ci left: 5.538123e-02	ci right 6.070477e-02	k: 1740	n:30000
CLDN25   30000 perm   6 sec   (5236 perm/sec)   p_kst 5.800000e-02   p_cons 6.777333e-01   p_joint 1.347333e-01

Outputting figure to mutsig2_images.part000000000039/CLDN25.4_694_30000_0.058_0.67773_0.13473.png
                gene_name: CLDN25
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 32 percent done.
CLEC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
Cons ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
CLEC16A   10000 perm   2 sec   (5156 perm/sec)   p_kst 2.079000e-01   p_cons 3.194000e-01   p_joint 2.726000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC16A.4_3254_10000_0.2079_0.3194_0.2726.png
                gene_name: CLEC16A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 34 percent done.
CLEC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.095056e-02	ci left: 2.835954e-01	ci right 3.015256e-01	k: 2925	n:10000
Cons ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
CLEC1A   10000 perm   2 sec   (6099 perm/sec)   p_kst 6.383000e-01   p_cons 1.483000e-01   p_joint 2.925000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1A.4_867_10000_0.6383_0.1483_0.2925.png
                gene_name: CLEC1A
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 36 percent done.
CLEC9A
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114312e-02	ci left: 9.199722e-01	ci right 9.303785e-01	k: 9253	n:10000
Cons ci ratio: 6.158604e-03	ci left: 9.728080e-01	ci right 9.789104e-01	k: 9760	n:10000
KS ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
CLEC9A   10000 perm   2 sec   (6268 perm/sec)   p_kst 6.534000e-01   p_cons 9.760000e-01   p_joint 9.253000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC9A.3_750_10000_0.6534_0.976_0.9253.png
                gene_name: CLEC9A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 38 percent done.
CLPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
Cons ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
KS ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
CLPX   10000 perm   2 sec   (5755 perm/sec)   p_kst 8.380000e-02   p_cons 5.895000e-01   p_joint 8.210000e-02

Joint ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
Cons ci ratio: 2.307909e-02	ci left: 5.836973e-01	ci right 5.973764e-01	k: 11811	n:20000
KS ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
CLPX   20000 perm   4 sec   (5153 perm/sec)   p_kst 8.300000e-02   p_cons 5.905500e-01   p_joint 1.056500e-01

Outputting figure to mutsig2_images.part000000000039/CLPX.4_1958_20000_0.083_0.59055_0.10565.png
                gene_name: CLPX
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
CLUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
CLUL1   10000 perm   2 sec   (5725 perm/sec)   p_kst 4.459000e-01   p_cons 9.364000e-01   p_joint 7.396000e-01

Outputting figure to mutsig2_images.part000000000039/CLUL1.4_1433_10000_0.4459_0.9364_0.7396.png
                gene_name: CLUL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 42 percent done.
CLEC12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KS ci ratio: 2.801423e-02	ci left: 6.525320e-01	ci right 6.711736e-01	k: 6619	n:10000
CLEC12A   10000 perm   2 sec   (6207 perm/sec)   p_kst 6.619000e-01   p_cons 5.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC12A.3_822_10000_0.6619_0.5224_1.png
                gene_name: CLEC12A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
CLEC12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
CLEC12B   10000 perm   1 sec   (6928 perm/sec)   p_kst 3.260000e-02   p_cons 1.900000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
KS ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
CLEC12B   20000 perm   3 sec   (6073 perm/sec)   p_kst 3.275000e-02   p_cons 1.550000e-03   p_joint 0

Joint ci ratio: 5.379686e-01	ci left: 1.294799e-03	ci right 2.272423e-03	k: 52	n:30000
Cons ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
KS ci ratio: 1.244748e-01	ci left: 3.000484e-02	ci right 3.401980e-02	k: 959	n:30000
CLEC12B   30000 perm   5 sec   (5707 perm/sec)   p_kst 3.196667e-02   p_cons 1.700000e-03   p_joint 1.733333e-03

Joint ci ratio: 6.118797e-01	ci left: 7.145078e-04	ci right 1.361470e-03	k: 40	n:40000
Cons ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
KS ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
CLEC12B   40000 perm   7 sec   (5500 perm/sec)   p_kst 3.220000e-02   p_cons 1.825000e-03   p_joint 1.000000e-03

Joint ci ratio: 5.906963e-01	ci left: 6.224540e-04	ci right 1.158241e-03	k: 43	n:50000
Cons ci ratio: 3.803365e-01	ci left: 1.717903e-03	ci right 2.541616e-03	k: 105	n:50000
KS ci ratio: 9.586270e-02	ci left: 3.080662e-02	ci right 3.392798e-02	k: 1617	n:50000
CLEC12B   50000 perm   9 sec   (5346 perm/sec)   p_kst 3.234000e-02   p_cons 2.100000e-03   p_joint 8.600000e-04

Joint ci ratio: 5.283260e-01	ci left: 6.761778e-04	ci right 1.174144e-03	k: 54	n:60000
Cons ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
KS ci ratio: 8.761773e-02	ci left: 3.086706e-02	ci right 3.371174e-02	k: 1936	n:60000
CLEC12B   60000 perm   12 sec   (5204 perm/sec)   p_kst 3.226667e-02   p_cons 2.166667e-03   p_joint 9.000000e-04

Joint ci ratio: 6.721064e-01	ci left: 3.245313e-04	ci right 6.619979e-04	k: 33	n:70000
Cons ci ratio: 3.197213e-01	ci left: 1.800802e-03	ci right 2.498640e-03	k: 149	n:70000
KS ci ratio: 8.120813e-02	ci left: 3.090454e-02	ci right 3.353442e-02	k: 2254	n:70000
CLEC12B   70000 perm   14 sec   (5084 perm/sec)   p_kst 3.220000e-02   p_cons 2.128571e-03   p_joint 4.714286e-04

Joint ci ratio: 5.778027e-01	ci left: 4.103200e-04	ci right 7.525977e-04	k: 45	n:80000
Cons ci ratio: 3.076704e-01	ci left: 1.713884e-03	ci right 2.348099e-03	k: 161	n:80000
KS ci ratio: 7.695852e-02	ci left: 3.020228e-02	ci right 3.263185e-02	k: 2512	n:80000
CLEC12B   80000 perm   16 sec   (4979 perm/sec)   p_kst 3.140000e-02   p_cons 2.012500e-03   p_joint 5.625000e-04

Joint ci ratio: 8.356400e-01	ci left: 1.444426e-04	ci right 3.566528e-04	k: 21	n:90000
Cons ci ratio: 2.918856e-01	ci left: 1.708420e-03	ci right 2.302190e-03	k: 179	n:90000
KS ci ratio: 7.278514e-02	ci left: 3.008464e-02	ci right 3.236793e-02	k: 2809	n:90000
CLEC12B   90000 perm   18 sec   (4879 perm/sec)   p_kst 3.121111e-02   p_cons 1.988889e-03   p_joint 2.333333e-04

Joint ci ratio: 3.275708e-01	ci left: 1.196182e-03	ci right 1.673488e-03	k: 142	n:100000
Cons ci ratio: 2.748493e-01	ci left: 1.751253e-03	ci right 2.318253e-03	k: 202	n:100000
KS ci ratio: 6.707123e-02	ci left: 3.192106e-02	ci right 3.414614e-02	k: 3302	n:100000
CLEC12B   100000 perm   21 sec   (4775 perm/sec)   p_kst 3.302000e-02   p_cons 2.020000e-03   p_joint 1.420000e-03

Joint ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
Cons ci ratio: 2.658431e-01	ci left: 1.710691e-03	ci right 2.243388e-03	k: 216	n:110000
KS ci ratio: 6.408046e-02	ci left: 3.184473e-02	ci right 3.396181e-02	k: 3618	n:110000
CLEC12B   110000 perm   24 sec   (4673 perm/sec)   p_kst 3.289091e-02   p_cons 1.963636e-03   p_joint 8.636364e-04

Joint ci ratio: 2.715663e-01	ci left: 1.498162e-03	ci right 1.976434e-03	k: 207	n:120000
Cons ci ratio: 2.543787e-01	ci left: 1.723940e-03	ci right 2.233942e-03	k: 236	n:120000
KS ci ratio: 6.140871e-02	ci left: 3.183222e-02	ci right 3.385710e-02	k: 3940	n:120000
CLEC12B   120000 perm   26 sec   (4579 perm/sec)   p_kst 3.283333e-02   p_cons 1.966667e-03   p_joint 1.725000e-03

Joint ci ratio: 2.702861e-01	ci left: 1.397248e-03	ci right 1.840843e-03	k: 209	n:130000
Cons ci ratio: 2.433333e-01	ci left: 1.750013e-03	ci right 2.241856e-03	k: 258	n:130000
KS ci ratio: 5.879640e-02	ci left: 3.208860e-02	ci right 3.403999e-02	k: 4297	n:130000
CLEC12B   130000 perm   29 sec   (4495 perm/sec)   p_kst 3.305385e-02   p_cons 1.984615e-03   p_joint 1.607692e-03

Joint ci ratio: 3.311336e-01	ci left: 8.347316e-04	ci right 1.172200e-03	k: 139	n:140000
Cons ci ratio: 2.327833e-01	ci left: 1.786224e-03	ci right 2.263349e-03	k: 282	n:140000
KS ci ratio: 5.673765e-02	ci left: 3.203515e-02	ci right 3.391283e-02	k: 4615	n:140000
CLEC12B   140000 perm   32 sec   (4417 perm/sec)   p_kst 3.296429e-02   p_cons 2.014286e-03   p_joint 9.928571e-04

Joint ci ratio: 3.177918e-01	ci left: 8.525711e-04	ci right 1.180543e-03	k: 151	n:150000
Cons ci ratio: 2.216946e-01	ci left: 1.849483e-03	ci right 2.316765e-03	k: 311	n:150000
KS ci ratio: 5.478353e-02	ci left: 3.210169e-02	ci right 3.391642e-02	k: 4950	n:150000
CLEC12B   150000 perm   35 sec   (4343 perm/sec)   p_kst 3.300000e-02   p_cons 2.073333e-03   p_joint 1.006667e-03

Joint ci ratio: 2.896081e-01	ci left: 9.783133e-04	ci right 1.315183e-03	k: 182	n:160000
Cons ci ratio: 2.129939e-01	ci left: 1.887552e-03	ci right 2.343291e-03	k: 337	n:160000
KS ci ratio: 5.307027e-02	ci left: 3.209919e-02	ci right 3.385528e-02	k: 5275	n:160000
CLEC12B   160000 perm   37 sec   (4267 perm/sec)   p_kst 3.296875e-02   p_cons 2.106250e-03   p_joint 1.137500e-03

Joint ci ratio: 3.022842e-01	ci left: 8.390678e-04	ci right 1.143070e-03	k: 167	n:170000
Cons ci ratio: 2.069596e-01	ci left: 1.887981e-03	ci right 2.329275e-03	k: 357	n:170000
KS ci ratio: 5.140873e-02	ci left: 3.221976e-02	ci right 3.392562e-02	k: 5621	n:170000
CLEC12B   170000 perm   41 sec   (4194 perm/sec)   p_kst 3.306471e-02   p_cons 2.100000e-03   p_joint 9.823529e-04

Joint ci ratio: 2.366349e-01	ci left: 1.342188e-03	ci right 1.707502e-03	k: 273	n:180000
Cons ci ratio: 2.003512e-01	ci left: 1.909630e-03	ci right 2.339990e-03	k: 381	n:180000
KS ci ratio: 4.988974e-02	ci left: 3.233318e-02	ci right 3.399301e-02	k: 5968	n:180000
CLEC12B   180000 perm   44 sec   (4125 perm/sec)   p_kst 3.315556e-02   p_cons 2.116667e-03   p_joint 1.516667e-03

Joint ci ratio: 2.308125e-01	ci left: 1.340916e-03	ci right 1.695624e-03	k: 287	n:190000
Cons ci ratio: 1.943379e-01	ci left: 1.929201e-03	ci right 2.349379e-03	k: 405	n:190000
KS ci ratio: 4.864547e-02	ci left: 3.224288e-02	ci right 3.385562e-02	k: 6278	n:190000
CLEC12B   190000 perm   47 sec   (4060 perm/sec)   p_kst 3.304211e-02   p_cons 2.131579e-03   p_joint 1.510526e-03

Joint ci ratio: 2.397393e-01	ci left: 1.175045e-03	ci right 1.499685e-03	k: 266	n:200000
Cons ci ratio: 1.906207e-01	ci left: 1.908884e-03	ci right 2.315763e-03	k: 421	n:200000
KS ci ratio: 4.751597e-02	ci left: 3.212747e-02	ci right 3.369611e-02	k: 6581	n:200000
CLEC12B   200000 perm   50 sec   (4000 perm/sec)   p_kst 3.290500e-02   p_cons 2.105000e-03   p_joint 1.330000e-03

Joint ci ratio: 1.570711e-01	ci left: 2.724834e-03	ci right 3.193814e-03	k: 620	n:210000
Cons ci ratio: 1.856284e-01	ci left: 1.922352e-03	ci right 2.320162e-03	k: 444	n:210000
KS ci ratio: 4.640939e-02	ci left: 3.209408e-02	ci right 3.362361e-02	k: 6899	n:210000
CLEC12B   210000 perm   53 sec   (3940 perm/sec)   p_kst 3.285238e-02   p_cons 2.114286e-03   p_joint 2.952381e-03

Joint ci ratio: 1.537648e-01	ci left: 2.718932e-03	ci right 3.176138e-03	k: 647	n:220000
Cons ci ratio: 1.815930e-01	ci left: 1.921704e-03	ci right 2.309783e-03	k: 464	n:220000
KS ci ratio: 4.527626e-02	ci left: 3.220348e-02	ci right 3.369977e-02	k: 7248	n:220000
CLEC12B   220000 perm   57 sec   (3879 perm/sec)   p_kst 3.294545e-02   p_cons 2.109091e-03   p_joint 2.940909e-03

Joint ci ratio: 1.700773e-01	ci left: 2.108351e-03	ci right 2.504358e-03	k: 529	n:230000
Cons ci ratio: 1.781784e-01	ci left: 1.912887e-03	ci right 2.291140e-03	k: 482	n:230000
KS ci ratio: 4.426445e-02	ci left: 3.224355e-02	ci right 3.370738e-02	k: 7583	n:230000
CLEC12B   230000 perm   60 sec   (3823 perm/sec)   p_kst 3.296957e-02   p_cons 2.095652e-03   p_joint 2.300000e-03

Joint ci ratio: 1.648674e-01	ci left: 2.156238e-03	ci right 2.547602e-03	k: 563	n:240000
Cons ci ratio: 1.723824e-01	ci left: 1.964657e-03	ci right 2.339195e-03	k: 515	n:240000
KS ci ratio: 4.334589e-02	ci left: 3.223940e-02	ci right 3.367191e-02	k: 7908	n:240000
CLEC12B   240000 perm   64 sec   (3768 perm/sec)   p_kst 3.295000e-02   p_cons 2.145833e-03   p_joint 2.345833e-03

Joint ci ratio: 1.624396e-01	ci left: 2.135201e-03	ci right 2.516483e-03	k: 580	n:250000
Cons ci ratio: 1.689784e-01	ci left: 1.966483e-03	ci right 2.333212e-03	k: 536	n:250000
KS ci ratio: 4.245293e-02	ci left: 3.227942e-02	ci right 3.368343e-02	k: 8244	n:250000
CLEC12B   250000 perm   67 sec   (3714 perm/sec)   p_kst 3.297600e-02   p_cons 2.144000e-03   p_joint 2.320000e-03

Joint ci ratio: 1.589218e-01	ci left: 2.149059e-03	ci right 2.523712e-03	k: 606	n:260000
Cons ci ratio: 1.654714e-01	ci left: 1.975609e-03	ci right 2.335633e-03	k: 559	n:260000
KS ci ratio: 4.164309e-02	ci left: 3.227095e-02	ci right 3.364718e-02	k: 8568	n:260000
CLEC12B   260000 perm   71 sec   (3661 perm/sec)   p_kst 3.295385e-02   p_cons 2.150000e-03   p_joint 2.330769e-03

Joint ci ratio: 1.572498e-01	ci left: 2.115704e-03	ci right 2.480296e-03	k: 619	n:270000
Cons ci ratio: 1.623137e-01	ci left: 1.980578e-03	ci right 2.333948e-03	k: 581	n:270000
KS ci ratio: 4.088027e-02	ci left: 3.225968e-02	ci right 3.360963e-02	k: 8891	n:270000
CLEC12B   270000 perm   75 sec   (3611 perm/sec)   p_kst 3.292963e-02   p_cons 2.151852e-03   p_joint 2.292593e-03

Joint ci ratio: 1.672899e-01	ci left: 1.793407e-03	ci right 2.124180e-03	k: 547	n:280000
Cons ci ratio: 1.598615e-01	ci left: 1.971537e-03	ci right 2.317469e-03	k: 599	n:280000
KS ci ratio: 4.015790e-02	ci left: 3.224943e-02	ci right 3.357455e-02	k: 9214	n:280000
CLEC12B   280000 perm   79 sec   (3561 perm/sec)   p_kst 3.290714e-02   p_cons 2.139286e-03   p_joint 1.953571e-03

Joint ci ratio: 1.651946e-01	ci left: 1.777832e-03	ci right 2.101217e-03	k: 561	n:290000
Cons ci ratio: 1.576450e-01	ci left: 1.959844e-03	ci right 2.298505e-03	k: 616	n:290000
KS ci ratio: 3.943618e-02	ci left: 3.229814e-02	ci right 3.360087e-02	k: 9554	n:290000
CLEC12B   290000 perm   83 sec   (3513 perm/sec)   p_kst 3.294483e-02   p_cons 2.124138e-03   p_joint 1.934483e-03

Joint ci ratio: 1.764025e-01	ci left: 1.498373e-03	ci right 1.791389e-03	k: 492	n:300000
Cons ci ratio: 1.544237e-01	ci left: 1.977800e-03	ci right 2.311934e-03	k: 642	n:300000
KS ci ratio: 3.880682e-02	ci left: 3.225465e-02	ci right 3.353440e-02	k: 9867	n:300000
CLEC12B   300000 perm   87 sec   (3465 perm/sec)   p_kst 3.289000e-02   p_cons 2.140000e-03   p_joint 1.640000e-03

Joint ci ratio: 1.736080e-01	ci left: 1.499390e-03	ci right 1.787474e-03	k: 508	n:310000
Cons ci ratio: 1.520771e-01	ci left: 1.976042e-03	ci right 2.304344e-03	k: 662	n:310000
KS ci ratio: 3.811963e-02	ci left: 3.235794e-02	ci right 3.361855e-02	k: 10225	n:310000
CLEC12B   310000 perm   91 sec   (3420 perm/sec)   p_kst 3.298387e-02   p_cons 2.135484e-03   p_joint 1.638710e-03

Joint ci ratio: 1.782312e-01	ci left: 1.374853e-03	ci right 1.646802e-03	k: 482	n:320000
Cons ci ratio: 1.501651e-01	ci left: 1.965406e-03	ci right 2.287467e-03	k: 679	n:320000
KS ci ratio: 3.750802e-02	ci left: 3.238683e-02	ci right 3.362789e-02	k: 10561	n:320000
CLEC12B   320000 perm   95 sec   (3376 perm/sec)   p_kst 3.300313e-02   p_cons 2.121875e-03   p_joint 1.506250e-03

Joint ci ratio: 1.994057e-01	ci left: 1.053084e-03	ci right 1.289149e-03	k: 385	n:330000
Cons ci ratio: 1.477932e-01	ci left: 1.970030e-03	ci right 2.287299e-03	k: 701	n:330000
KS ci ratio: 3.695827e-02	ci left: 3.235707e-02	ci right 3.357843e-02	k: 10878	n:330000
CLEC12B   330000 perm   99 sec   (3332 perm/sec)   p_kst 3.296364e-02   p_cons 2.124242e-03   p_joint 1.166667e-03

Joint ci ratio: 2.232612e-01	ci left: 8.047895e-04	ci right 1.009753e-03	k: 307	n:340000
Cons ci ratio: 1.444348e-01	ci left: 2.005602e-03	ci right 2.320627e-03	k: 734	n:340000
KS ci ratio: 3.644547e-02	ci left: 3.230585e-02	ci right 3.350801e-02	k: 11187	n:340000
CLEC12B   340000 perm   103 sec   (3289 perm/sec)   p_kst 3.290294e-02   p_cons 2.158824e-03   p_joint 9.029412e-04

Joint ci ratio: 2.214721e-01	ci left: 7.952851e-04	ci right 9.959837e-04	k: 312	n:350000
Cons ci ratio: 1.421324e-01	ci left: 2.014413e-03	ci right 2.325350e-03	k: 758	n:350000
KS ci ratio: 3.596153e-02	ci left: 3.224352e-02	ci right 3.342709e-02	k: 11491	n:350000
CLEC12B   350000 perm   108 sec   (3247 perm/sec)   p_kst 3.283143e-02   p_cons 2.165714e-03   p_joint 8.914286e-04

Joint ci ratio: 2.183550e-01	ci left: 7.968170e-04	ci right 9.946922e-04	k: 321	n:360000
Cons ci ratio: 1.403867e-01	ci left: 2.009369e-03	ci right 2.315400e-03	k: 777	n:360000
KS ci ratio: 3.549013e-02	ci left: 3.219576e-02	ci right 3.336177e-02	k: 11799	n:360000
CLEC12B   360000 perm   112 sec   (3207 perm/sec)   p_kst 3.277500e-02   p_cons 2.158333e-03   p_joint 8.916667e-04

Joint ci ratio: 2.153660e-01	ci left: 7.982847e-04	ci right 9.934520e-04	k: 330	n:370000
Cons ci ratio: 1.388784e-01	ci left: 1.999402e-03	ci right 2.300372e-03	k: 794	n:370000
KS ci ratio: 3.503531e-02	ci left: 3.215337e-02	ci right 3.330262e-02	k: 12108	n:370000
CLEC12B   370000 perm   117 sec   (3168 perm/sec)   p_kst 3.272432e-02   p_cons 2.145946e-03   p_joint 8.918919e-04

Joint ci ratio: 2.137587e-01	ci left: 7.897276e-04	ci right 9.811730e-04	k: 335	n:380000
Cons ci ratio: 1.369118e-01	ci left: 2.005224e-03	ci right 2.302449e-03	k: 817	n:380000
KS ci ratio: 3.455009e-02	ci left: 3.219941e-02	ci right 3.333405e-02	k: 12450	n:380000
CLEC12B   380000 perm   121 sec   (3129 perm/sec)   p_kst 3.276316e-02   p_cons 2.150000e-03   p_joint 8.815789e-04

Joint ci ratio: 2.103427e-01	ci left: 7.961859e-04	ci right 9.857150e-04	k: 346	n:390000
Cons ci ratio: 1.352684e-01	ci left: 2.003344e-03	ci right 2.296439e-03	k: 837	n:390000
KS ci ratio: 3.410380e-02	ci left: 3.220759e-02	ci right 3.332757e-02	k: 12778	n:390000
CLEC12B   390000 perm   126 sec   (3091 perm/sec)   p_kst 3.276410e-02   p_cons 2.146154e-03   p_joint 8.871795e-04

Joint ci ratio: 2.070854e-01	ci left: 8.023443e-04	ci right 9.900070e-04	k: 357	n:400000
Cons ci ratio: 1.330626e-01	ci left: 2.020912e-03	ci right 2.311375e-03	k: 865	n:400000
KS ci ratio: 3.366507e-02	ci left: 3.223281e-02	ci right 3.333897e-02	k: 13113	n:400000
CLEC12B   400000 perm   131 sec   (3054 perm/sec)   p_kst 3.278250e-02   p_cons 2.162500e-03   p_joint 8.925000e-04

Joint ci ratio: 2.147272e-01	ci left: 7.250155e-04	ci right 9.016744e-04	k: 332	n:410000
Cons ci ratio: 1.317762e-01	ci left: 2.011711e-03	ci right 2.297837e-03	k: 882	n:410000
KS ci ratio: 3.320967e-02	ci left: 3.231980e-02	ci right 3.341365e-02	k: 13474	n:410000
CLEC12B   410000 perm   136 sec   (3018 perm/sec)   p_kst 3.286341e-02   p_cons 2.151220e-03   p_joint 8.097561e-04

Joint ci ratio: 2.225586e-01	ci left: 6.559865e-04	ci right 8.224545e-04	k: 309	n:420000
Cons ci ratio: 1.302367e-01	ci left: 2.012174e-03	ci right 2.294764e-03	k: 903	n:420000
KS ci ratio: 3.279555e-02	ci left: 3.235785e-02	ci right 3.343908e-02	k: 13816	n:420000
CLEC12B   420000 perm   141 sec   (2983 perm/sec)   p_kst 3.289524e-02   p_cons 2.150000e-03   p_joint 7.357143e-04

Joint ci ratio: 2.222022e-01	ci left: 6.429266e-04	ci right 8.057833e-04	k: 310	n:430000
Cons ci ratio: 1.286803e-01	ci left: 2.014886e-03	ci right 2.294216e-03	k: 925	n:430000
KS ci ratio: 3.239300e-02	ci left: 3.240114e-02	ci right 3.347028e-02	k: 14161	n:430000
CLEC12B   430000 perm   146 sec   (2949 perm/sec)   p_kst 3.293256e-02   p_cons 2.151163e-03   p_joint 7.209302e-04

Joint ci ratio: 2.187130e-01	ci left: 6.497873e-04	ci right 8.114499e-04	k: 320	n:440000
Cons ci ratio: 1.270441e-01	ci left: 2.021894e-03	ci right 2.298364e-03	k: 949	n:440000
KS ci ratio: 3.200948e-02	ci left: 3.243352e-02	ci right 3.349082e-02	k: 14502	n:440000
CLEC12B   440000 perm   151 sec   (2917 perm/sec)   p_kst 3.295909e-02   p_cons 2.156818e-03   p_joint 7.272727e-04

Joint ci ratio: 2.561915e-01	ci left: 4.534376e-04	ci right 5.886843e-04	k: 233	n:450000
Cons ci ratio: 1.251472e-01	ci left: 2.039376e-03	ci right 2.313764e-03	k: 978	n:450000
KS ci ratio: 3.161505e-02	ci left: 3.251305e-02	ci right 3.355964e-02	k: 14865	n:450000
CLEC12B   450000 perm   156 sec   (2885 perm/sec)   p_kst 3.303333e-02   p_cons 2.173333e-03   p_joint 5.177778e-04

Joint ci ratio: 2.595437e-01	ci left: 4.313791e-04	ci right 5.620031e-04	k: 227	n:460000
Cons ci ratio: 1.238884e-01	ci left: 2.037166e-03	ci right 2.308296e-03	k: 998	n:460000
KS ci ratio: 3.128267e-02	ci left: 3.249210e-02	ci right 3.352683e-02	k: 15183	n:460000
CLEC12B   460000 perm   161 sec   (2853 perm/sec)   p_kst 3.300652e-02   p_cons 2.169565e-03   p_joint 4.934783e-04

Joint ci ratio: 2.698031e-01	ci left: 3.884282e-04	ci right 5.114837e-04	k: 210	n:470000
Cons ci ratio: 1.224863e-01	ci left: 2.041250e-03	ci right 2.309627e-03	k: 1021	n:470000
KS ci ratio: 3.093993e-02	ci left: 3.251434e-02	ci right 3.353823e-02	k: 15521	n:470000
CLEC12B   470000 perm   166 sec   (2823 perm/sec)   p_kst 3.302340e-02   p_cons 2.172340e-03   p_joint 4.468085e-04

Joint ci ratio: 2.913161e-01	ci left: 3.222246e-04	ci right 4.339510e-04	k: 180	n:480000
Cons ci ratio: 1.212470e-01	ci left: 2.041140e-03	ci right 2.306593e-03	k: 1042	n:480000
KS ci ratio: 3.059026e-02	ci left: 3.257294e-02	ci right 3.358688e-02	k: 15877	n:480000
CLEC12B   480000 perm   172 sec   (2795 perm/sec)   p_kst 3.307708e-02   p_cons 2.170833e-03   p_joint 3.750000e-04

Joint ci ratio: 2.835857e-01	ci left: 3.345861e-04	ci right 4.469696e-04	k: 190	n:490000
Cons ci ratio: 1.201579e-01	ci left: 2.037089e-03	ci right 2.299465e-03	k: 1061	n:490000
KS ci ratio: 3.030436e-02	ci left: 3.251980e-02	ci right 3.352246e-02	k: 16179	n:490000
CLEC12B   490000 perm   177 sec   (2766 perm/sec)   p_kst 3.301837e-02   p_cons 2.165306e-03   p_joint 3.877551e-04

Joint ci ratio: 2.813847e-01	ci left: 3.334694e-04	ci right 4.444542e-04	k: 193	n:500000
Cons ci ratio: 1.186038e-01	ci left: 2.050676e-03	ci right 2.311147e-03	k: 1089	n:500000
KS ci ratio: 2.999997e-02	ci left: 3.252443e-02	ci right 3.351699e-02	k: 16509	n:500000
CLEC12B   500000 perm   183 sec   (2737 perm/sec)   p_kst 3.301800e-02   p_cons 2.178000e-03   p_joint 3.860000e-04

Joint ci ratio: 2.785279e-01	ci left: 3.342234e-04	ci right 4.441317e-04	k: 197	n:510000
Cons ci ratio: 1.172662e-01	ci left: 2.058040e-03	ci right 2.316295e-03	k: 1114	n:510000
KS ci ratio: 2.969820e-02	ci left: 3.254255e-02	ci right 3.352551e-02	k: 16846	n:510000
CLEC12B   510000 perm   188 sec   (2708 perm/sec)   p_kst 3.303137e-02   p_cons 2.184314e-03   p_joint 3.862745e-04

Joint ci ratio: 2.757564e-01	ci left: 3.349538e-04	ci right 4.438162e-04	k: 201	n:520000
Cons ci ratio: 1.163314e-01	ci left: 2.052066e-03	ci right 2.307377e-03	k: 1132	n:520000
KS ci ratio: 2.938061e-02	ci left: 3.261349e-02	ci right 3.358787e-02	k: 17211	n:520000
CLEC12B   520000 perm   194 sec   (2680 perm/sec)   p_kst 3.309808e-02   p_cons 2.176923e-03   p_joint 3.865385e-04

Joint ci ratio: 2.737315e-01	ci left: 3.339044e-04	ci right 4.414917e-04	k: 204	n:530000
Cons ci ratio: 1.152682e-01	ci left: 2.051823e-03	ci right 2.304612e-03	k: 1153	n:530000
KS ci ratio: 2.907898e-02	ci left: 3.266869e-02	ci right 3.363454e-02	k: 17569	n:530000
CLEC12B   530000 perm   200 sec   (2653 perm/sec)   p_kst 3.314906e-02   p_cons 2.175472e-03   p_joint 3.849057e-04

Joint ci ratio: 2.483624e-01	ci left: 4.038853e-04	ci right 5.201021e-04	k: 248	n:540000
Cons ci ratio: 1.146253e-01	ci left: 2.037207e-03	ci right 2.286701e-03	k: 1166	n:540000
KS ci ratio: 2.882555e-02	ci left: 3.263546e-02	ci right 3.359178e-02	k: 17880	n:540000
CLEC12B   540000 perm   206 sec   (2626 perm/sec)   p_kst 3.311111e-02   p_cons 2.159259e-03   p_joint 4.592593e-04

Joint ci ratio: 2.478660e-01	ci left: 3.982470e-04	ci right 5.125770e-04	k: 249	n:550000
Cons ci ratio: 1.133689e-01	ci left: 2.046093e-03	ci right 2.293744e-03	k: 1192	n:550000
KS ci ratio: 2.855025e-02	ci left: 3.266668e-02	ci right 3.361461e-02	k: 18226	n:550000
CLEC12B   550000 perm   212 sec   (2600 perm/sec)   p_kst 3.313818e-02   p_cons 2.167273e-03   p_joint 4.527273e-04

Joint ci ratio: 2.449438e-01	ci left: 4.011882e-04	ci right 5.147982e-04	k: 255	n:560000
Cons ci ratio: 1.124770e-01	ci left: 2.042525e-03	ci right 2.287671e-03	k: 1211	n:560000
KS ci ratio: 2.830476e-02	ci left: 3.264716e-02	ci right 3.358625e-02	k: 18544	n:560000
CLEC12B   560000 perm   218 sec   (2574 perm/sec)   p_kst 3.311429e-02   p_cons 2.162500e-03   p_joint 4.553571e-04

Joint ci ratio: 2.435214e-01	ci left: 3.990909e-04	ci right 5.113514e-04	k: 258	n:570000
Cons ci ratio: 1.116514e-01	ci left: 2.037385e-03	ci right 2.280000e-03	k: 1229	n:570000
KS ci ratio: 2.805396e-02	ci left: 3.265450e-02	ci right 3.358534e-02	k: 18877	n:570000
CLEC12B   570000 perm   224 sec   (2549 perm/sec)   p_kst 3.311754e-02   p_cons 2.156140e-03   p_joint 4.526316e-04

Joint ci ratio: 2.416625e-01	ci left: 3.986873e-04	ci right 5.098500e-04	k: 262	n:580000
Cons ci ratio: 1.107991e-01	ci left: 2.034105e-03	ci right 2.274360e-03	k: 1248	n:580000
KS ci ratio: 2.781795e-02	ci left: 3.264278e-02	ci right 3.356534e-02	k: 19199	n:580000
CLEC12B   580000 perm   230 sec   (2524 perm/sec)   p_kst 3.310172e-02   p_cons 2.151724e-03   p_joint 4.517241e-04

Joint ci ratio: 2.398456e-01	ci left: 3.983006e-04	ci right 5.083963e-04	k: 266	n:590000
Cons ci ratio: 1.099661e-01	ci left: 2.030942e-03	ci right 2.268904e-03	k: 1267	n:590000
KS ci ratio: 2.756517e-02	ci left: 3.268368e-02	ci right 3.359887e-02	k: 19552	n:590000
CLEC12B   590000 perm   236 sec   (2500 perm/sec)   p_kst 3.313898e-02   p_cons 2.147458e-03   p_joint 4.508475e-04

Joint ci ratio: 2.354754e-01	ci left: 4.073369e-04	ci right 5.175799e-04	k: 276	n:600000
Cons ci ratio: 1.089397e-01	ci left: 2.035999e-03	ci right 2.272183e-03	k: 1291	n:600000
KS ci ratio: 2.730781e-02	ci left: 3.274975e-02	ci right 3.365810e-02	k: 19921	n:600000
CLEC12B   600000 perm   242 sec   (2476 perm/sec)   p_kst 3.320167e-02   p_cons 2.151667e-03   p_joint 4.600000e-04

Joint ci ratio: 2.468856e-01	ci left: 3.621497e-04	ci right 4.656423e-04	k: 251	n:610000
Cons ci ratio: 1.080239e-01	ci left: 2.037709e-03	ci right 2.271978e-03	k: 1313	n:610000
KS ci ratio: 2.706580e-02	ci left: 3.279415e-02	ci right 3.369554e-02	k: 20278	n:610000
CLEC12B   610000 perm   249 sec   (2453 perm/sec)   p_kst 3.324262e-02   p_cons 2.152459e-03   p_joint 4.114754e-04

Joint ci ratio: 2.444720e-01	ci left: 3.638767e-04	ci right 4.666919e-04	k: 256	n:620000
Cons ci ratio: 1.070906e-01	ci left: 2.040941e-03	ci right 2.273427e-03	k: 1336	n:620000
KS ci ratio: 2.685098e-02	ci left: 3.278747e-02	ci right 3.368141e-02	k: 20604	n:620000
CLEC12B   620000 perm   255 sec   (2430 perm/sec)   p_kst 3.323226e-02   p_cons 2.154839e-03   p_joint 4.129032e-04

Joint ci ratio: 2.435267e-01	ci left: 3.610813e-04	ci right 4.626525e-04	k: 258	n:630000
Cons ci ratio: 1.063379e-01	ci left: 2.037899e-03	ci right 2.268305e-03	k: 1355	n:630000
KS ci ratio: 2.664844e-02	ci left: 3.276368e-02	ci right 3.365014e-02	k: 20919	n:630000
CLEC12B   630000 perm   262 sec   (2408 perm/sec)   p_kst 3.320476e-02   p_cons 2.150794e-03   p_joint 4.095238e-04

Joint ci ratio: 2.407536e-01	ci left: 3.642457e-04	ci right 4.653662e-04	k: 264	n:640000
Cons ci ratio: 1.053707e-01	ci left: 2.044086e-03	ci right 2.272958e-03	k: 1380	n:640000
KS ci ratio: 2.644848e-02	ci left: 3.274532e-02	ci right 3.362453e-02	k: 21237	n:640000
CLEC12B   640000 perm   268 sec   (2385 perm/sec)   p_kst 3.318281e-02   p_cons 2.156250e-03   p_joint 4.125000e-04

Joint ci ratio: 2.380732e-01	ci left: 3.673191e-04	ci right 4.679901e-04	k: 270	n:650000
Cons ci ratio: 1.047660e-01	ci left: 2.036606e-03	ci right 2.263252e-03	k: 1396	n:650000
KS ci ratio: 2.624100e-02	ci left: 3.275660e-02	ci right 3.362911e-02	k: 21574	n:650000
CLEC12B   650000 perm   275 sec   (2363 perm/sec)   p_kst 3.319077e-02   p_cons 2.147692e-03   p_joint 4.153846e-04

Joint ci ratio: 2.363355e-01	ci left: 3.674541e-04	ci right 4.673194e-04	k: 274	n:660000
Cons ci ratio: 1.040241e-01	ci left: 2.035260e-03	ci right 2.260054e-03	k: 1416	n:660000
KS ci ratio: 2.605309e-02	ci left: 3.273142e-02	ci right 3.359692e-02	k: 21887	n:660000
CLEC12B   660000 perm   282 sec   (2342 perm/sec)   p_kst 3.316212e-02   p_cons 2.145455e-03   p_joint 4.151515e-04

Joint ci ratio: 2.337984e-01	ci left: 3.703976e-04	ci right 4.698261e-04	k: 280	n:670000
Cons ci ratio: 1.035509e-01	ci left: 2.023782e-03	ci right 2.246230e-03	k: 1429	n:670000
KS ci ratio: 2.584448e-02	ci left: 3.276783e-02	ci right 3.362725e-02	k: 22241	n:670000
CLEC12B   670000 perm   289 sec   (2321 perm/sec)   p_kst 3.319552e-02   p_cons 2.132836e-03   p_joint 4.179104e-04

Joint ci ratio: 2.449537e-01	ci left: 3.303888e-04	ci right 4.239537e-04	k: 255	n:680000
Cons ci ratio: 1.021309e-01	ci left: 2.051332e-03	ci right 2.273531e-03	k: 1469	n:680000
KS ci ratio: 2.566431e-02	ci left: 3.274474e-02	ci right 3.359748e-02	k: 22555	n:680000
CLEC12B   680000 perm   296 sec   (2301 perm/sec)   p_kst 3.316912e-02   p_cons 2.160294e-03   p_joint 3.750000e-04

Joint ci ratio: 2.430621e-01	ci left: 3.310432e-04	ci right 4.239603e-04	k: 259	n:690000
Cons ci ratio: 1.017517e-01	ci left: 2.037138e-03	ci right 2.256931e-03	k: 1480	n:690000
KS ci ratio: 2.548498e-02	ci left: 3.272954e-02	ci right 3.357584e-02	k: 22874	n:690000
CLEC12B   690000 perm   303 sec   (2280 perm/sec)   p_kst 3.315072e-02   p_cons 2.144928e-03   p_joint 3.753623e-04

Joint ci ratio: 2.421329e-01	ci left: 3.289975e-04	ci right 4.209343e-04	k: 261	n:700000
Cons ci ratio: 1.009369e-01	ci left: 2.041453e-03	ci right 2.259843e-03	k: 1504	n:700000
KS ci ratio: 2.529695e-02	ci left: 3.274602e-02	ci right 3.358642e-02	k: 23215	n:700000
CLEC12B   700000 perm   310 sec   (2259 perm/sec)   p_kst 3.316429e-02   p_cons 2.148571e-03   p_joint 3.728571e-04

Joint ci ratio: 2.398548e-01	ci left: 3.309808e-04	ci right 4.224722e-04	k: 266	n:710000
Cons ci ratio: 1.000104e-01	ci left: 2.051146e-03	ci right 2.268441e-03	k: 1532	n:710000
KS ci ratio: 2.512074e-02	ci left: 3.274247e-02	ci right 3.357684e-02	k: 23542	n:710000
CLEC12B   710000 perm   317 sec   (2239 perm/sec)   p_kst 3.315775e-02   p_cons 2.157746e-03   p_joint 3.746479e-04

Joint ci ratio: 2.449563e-01	ci left: 3.120335e-04	ci right 4.004013e-04	k: 255	n:720000
Cons ci ratio: 9.949297e-02	ci left: 2.044325e-03	ci right 2.259712e-03	k: 1548	n:720000
KS ci ratio: 2.495411e-02	ci left: 3.272385e-02	ci right 3.355213e-02	k: 23858	n:720000
CLEC12B   720000 perm   325 sec   (2218 perm/sec)   p_kst 3.313611e-02   p_cons 2.150000e-03   p_joint 3.541667e-04

Joint ci ratio: 2.435336e-01	ci left: 3.116171e-04	ci right 3.992769e-04	k: 258	n:730000
Cons ci ratio: 9.888851e-02	ci left: 2.041703e-03	ci right 2.255430e-03	k: 1567	n:730000
KS ci ratio: 2.478333e-02	ci left: 3.272483e-02	ci right 3.354738e-02	k: 24188	n:730000
CLEC12B   730000 perm   332 sec   (2199 perm/sec)   p_kst 3.313425e-02   p_cons 2.146575e-03   p_joint 3.534247e-04

Joint ci ratio: 2.141239e-01	ci left: 4.042480e-04	ci right 5.024342e-04	k: 334	n:740000
Cons ci ratio: 9.817102e-02	ci left: 2.044427e-03	ci right 2.256797e-03	k: 1590	n:740000
KS ci ratio: 2.461497e-02	ci left: 3.272848e-02	ci right 3.354545e-02	k: 24520	n:740000
CLEC12B   740000 perm   339 sec   (2180 perm/sec)   p_kst 3.313514e-02   p_cons 2.148649e-03   p_joint 4.513514e-04

Joint ci ratio: 2.125435e-01	ci left: 4.051686e-04	ci right 5.027573e-04	k: 339	n:750000
Cons ci ratio: 9.749921e-02	ci left: 2.045784e-03	ci right 2.256758e-03	k: 1612	n:750000
KS ci ratio: 2.445203e-02	ci left: 3.272675e-02	ci right 3.353820e-02	k: 24848	n:750000
CLEC12B   750000 perm   347 sec   (2162 perm/sec)   p_kst 3.313067e-02   p_cons 2.149333e-03   p_joint 4.520000e-04

Joint ci ratio: 2.116122e-01	ci left: 4.035751e-04	ci right 5.002989e-04	k: 342	n:760000
Cons ci ratio: 9.704942e-02	ci left: 2.038122e-03	ci right 2.247281e-03	k: 1627	n:760000
KS ci ratio: 2.428780e-02	ci left: 3.273685e-02	ci right 3.354303e-02	k: 25185	n:760000
CLEC12B   760000 perm   355 sec   (2144 perm/sec)   p_kst 3.313816e-02   p_cons 2.140789e-03   p_joint 4.500000e-04

Joint ci ratio: 2.094851e-01	ci left: 4.069455e-04	ci right 5.033709e-04	k: 349	n:770000
Cons ci ratio: 9.657634e-02	ci left: 2.031929e-03	ci right 2.239378e-03	k: 1643	n:770000
KS ci ratio: 2.412927e-02	ci left: 3.274026e-02	ci right 3.354118e-02	k: 25517	n:770000
CLEC12B   770000 perm   362 sec   (2126 perm/sec)   p_kst 3.313896e-02   p_cons 2.133766e-03   p_joint 4.532468e-04

Joint ci ratio: 2.065543e-01	ci left: 4.138812e-04	ci right 5.104046e-04	k: 359	n:780000
Cons ci ratio: 9.587887e-02	ci left: 2.035907e-03	ci right 2.242177e-03	k: 1667	n:780000
KS ci ratio: 2.397237e-02	ci left: 3.274742e-02	ci right 3.354323e-02	k: 25852	n:780000
CLEC12B   780000 perm   370 sec   (2109 perm/sec)   p_kst 3.314359e-02   p_cons 2.137179e-03   p_joint 4.602564e-04

Joint ci ratio: 2.167315e-01	ci left: 3.690817e-04	ci right 4.599635e-04	k: 326	n:790000
Cons ci ratio: 9.513996e-02	ci left: 2.042262e-03	ci right 2.247492e-03	k: 1693	n:790000
KS ci ratio: 2.382697e-02	ci left: 3.273176e-02	ci right 3.352230e-02	k: 26169	n:790000
CLEC12B   790000 perm   378 sec   (2091 perm/sec)   p_kst 3.312532e-02   p_cons 2.143038e-03   p_joint 4.126582e-04

Joint ci ratio: 2.141275e-01	ci left: 3.739288e-04	ci right 4.647525e-04	k: 334	n:800000
Cons ci ratio: 9.452809e-02	ci left: 2.043581e-03	ci right 2.247550e-03	k: 1715	n:800000
KS ci ratio: 2.368186e-02	ci left: 3.272272e-02	ci right 3.350817e-02	k: 26491	n:800000
CLEC12B   800000 perm   386 sec   (2074 perm/sec)   p_kst 3.311375e-02   p_cons 2.143750e-03   p_joint 4.175000e-04

Joint ci ratio: 2.131753e-01	ci left: 3.728179e-04	ci right 4.629164e-04	k: 337	n:810000
Cons ci ratio: 9.392787e-02	ci left: 2.044873e-03	ci right 2.247603e-03	k: 1737	n:810000
KS ci ratio: 2.353393e-02	ci left: 3.272865e-02	ci right 3.350927e-02	k: 26825	n:810000
CLEC12B   810000 perm   394 sec   (2058 perm/sec)   p_kst 3.311728e-02   p_cons 2.144444e-03   p_joint 4.160494e-04

Joint ci ratio: 2.367761e-01	ci left: 2.946072e-04	ci right 3.748454e-04	k: 273	n:820000
Cons ci ratio: 9.320636e-02	ci left: 2.052092e-03	ci right 2.253890e-03	k: 1764	n:820000
KS ci ratio: 2.339587e-02	ci left: 3.271504e-02	ci right 3.349070e-02	k: 27143	n:820000
CLEC12B   820000 perm   402 sec   (2042 perm/sec)   p_kst 3.310122e-02   p_cons 2.151220e-03   p_joint 3.329268e-04

Joint ci ratio: 2.350665e-01	ci left: 2.955921e-04	ci right 3.754328e-04	k: 277	n:830000
Cons ci ratio: 9.278706e-02	ci left: 2.046196e-03	ci right 2.246460e-03	k: 1780	n:830000
KS ci ratio: 2.326283e-02	ci left: 3.269459e-02	ci right 3.346530e-02	k: 27455	n:830000
CLEC12B   830000 perm   410 sec   (2026 perm/sec)   p_kst 3.307831e-02   p_cons 2.144578e-03   p_joint 3.337349e-04

Joint ci ratio: 2.329804e-01	ci left: 2.976766e-04	ci right 3.772641e-04	k: 282	n:840000
Cons ci ratio: 9.204032e-02	ci left: 2.055563e-03	ci right 2.255038e-03	k: 1809	n:840000
KS ci ratio: 2.311698e-02	ci left: 3.271608e-02	ci right 3.348239e-02	k: 27802	n:840000
CLEC12B   840000 perm   418 sec   (2010 perm/sec)   p_kst 3.309762e-02   p_cons 2.153571e-03   p_joint 3.357143e-04

Joint ci ratio: 2.317553e-01	ci left: 2.974985e-04	ci right 3.765602e-04	k: 285	n:850000
Cons ci ratio: 9.138605e-02	ci left: 2.061267e-03	ci right 2.259797e-03	k: 1835	n:850000
KS ci ratio: 2.299031e-02	ci left: 3.269144e-02	ci right 3.345292e-02	k: 28110	n:850000
CLEC12B   850000 perm   426 sec   (1995 perm/sec)   p_kst 3.307059e-02   p_cons 2.158824e-03   p_joint 3.352941e-04

Joint ci ratio: 2.317558e-01	ci left: 2.940392e-04	ci right 3.721817e-04	k: 285	n:860000
Cons ci ratio: 9.091697e-02	ci left: 2.058888e-03	ci right 2.256117e-03	k: 1854	n:860000
KS ci ratio: 2.286404e-02	ci left: 3.267201e-02	ci right 3.342881e-02	k: 28422	n:860000
CLEC12B   860000 perm   434 sec   (1979 perm/sec)   p_kst 3.304884e-02   p_cons 2.155814e-03   p_joint 3.313953e-04

Joint ci ratio: 2.297559e-01	ci left: 2.960743e-04	ci right 3.739824e-04	k: 290	n:870000
Cons ci ratio: 9.019016e-02	ci left: 2.068925e-03	ci right 2.265448e-03	k: 1884	n:870000
KS ci ratio: 2.273246e-02	ci left: 3.267362e-02	ci right 3.342604e-02	k: 28752	n:870000
CLEC12B   870000 perm   443 sec   (1964 perm/sec)   p_kst 3.304828e-02   p_cons 2.165517e-03   p_joint 3.333333e-04

Joint ci ratio: 2.289706e-01	ci left: 2.948520e-04	ci right 3.721357e-04	k: 292	n:880000
Cons ci ratio: 8.976279e-02	ci left: 2.065409e-03	ci right 2.260619e-03	k: 1902	n:880000
KS ci ratio: 2.260192e-02	ci left: 3.267860e-02	ci right 3.342675e-02	k: 29085	n:880000
CLEC12B   880000 perm   451 sec   (1950 perm/sec)   p_kst 3.305114e-02   p_cons 2.161364e-03   p_joint 3.318182e-04

Joint ci ratio: 2.281933e-01	ci left: 2.936575e-04	ci right 3.703301e-04	k: 294	n:890000
Cons ci ratio: 8.924837e-02	ci left: 2.066368e-03	ci right 2.260491e-03	k: 1924	n:890000
KS ci ratio: 2.247874e-02	ci left: 3.266894e-02	ci right 3.341275e-02	k: 29405	n:890000
CLEC12B   890000 perm   460 sec   (1936 perm/sec)   p_kst 3.303933e-02   p_cons 2.161798e-03   p_joint 3.303371e-04

Joint ci ratio: 2.274238e-01	ci left: 2.924901e-04	ci right 3.685642e-04	k: 296	n:900000
Cons ci ratio: 8.881128e-02	ci left: 2.064049e-03	ci right 2.256955e-03	k: 1943	n:900000
KS ci ratio: 2.235017e-02	ci left: 3.268051e-02	ci right 3.342027e-02	k: 29744	n:900000
CLEC12B   900000 perm   468 sec   (1922 perm/sec)   p_kst 3.304889e-02   p_cons 2.158889e-03   p_joint 3.288889e-04

Joint ci ratio: 2.274242e-01	ci left: 2.892758e-04	ci right 3.645141e-04	k: 296	n:910000
Cons ci ratio: 8.835801e-02	ci left: 2.062858e-03	ci right 2.254619e-03	k: 1963	n:910000
KS ci ratio: 2.222187e-02	ci left: 3.269730e-02	ci right 3.343314e-02	k: 30088	n:910000
CLEC12B   910000 perm   477 sec   (1908 perm/sec)   p_kst 3.306374e-02   p_cons 2.157143e-03   p_joint 3.252747e-04

Joint ci ratio: 1.942641e-01	ci left: 3.994248e-04	ci right 4.863795e-04	k: 406	n:920000
Cons ci ratio: 8.806744e-02	ci left: 2.054254e-03	ci right 2.244554e-03	k: 1976	n:920000
KS ci ratio: 2.209388e-02	ci left: 3.271915e-02	ci right 3.345119e-02	k: 30437	n:920000
CLEC12B   920000 perm   486 sec   (1894 perm/sec)   p_kst 3.308370e-02   p_cons 2.147826e-03   p_joint 4.413043e-04

Joint ci ratio: 1.930817e-01	ci left: 4.002456e-04	ci right 4.867863e-04	k: 411	n:930000
Cons ci ratio: 8.758146e-02	ci left: 2.055302e-03	ci right 2.244595e-03	k: 1998	n:930000
KS ci ratio: 2.198174e-02	ci left: 3.270096e-02	ci right 3.342883e-02	k: 30749	n:930000
CLEC12B   930000 perm   495 sec   (1881 perm/sec)   p_kst 3.306344e-02   p_cons 2.148387e-03   p_joint 4.419355e-04

Joint ci ratio: 2.197854e-01	ci left: 3.011334e-04	ci right 3.764697e-04	k: 317	n:940000
Cons ci ratio: 8.703872e-02	ci left: 2.059452e-03	ci right 2.247892e-03	k: 2023	n:940000
KS ci ratio: 2.185819e-02	ci left: 3.272127e-02	ci right 3.344544e-02	k: 31097	n:940000
CLEC12B   940000 perm   503 sec   (1867 perm/sec)   p_kst 3.308191e-02   p_cons 2.152128e-03   p_joint 3.372340e-04

Joint ci ratio: 2.180774e-01	ci left: 3.029382e-04	ci right 3.780581e-04	k: 322	n:950000
Cons ci ratio: 8.652712e-02	ci left: 2.062489e-03	ci right 2.250041e-03	k: 2047	n:950000
KS ci ratio: 2.173885e-02	ci left: 3.273487e-02	ci right 3.345535e-02	k: 31439	n:950000
CLEC12B   950000 perm   512 sec   (1854 perm/sec)   p_kst 3.309368e-02   p_cons 2.154737e-03   p_joint 3.389474e-04

Joint ci ratio: 2.170717e-01	ci left: 3.027373e-04	ci right 3.774151e-04	k: 325	n:960000
Cons ci ratio: 8.604524e-02	ci left: 2.064446e-03	ci right 2.251078e-03	k: 2070	n:960000
KS ci ratio: 2.161546e-02	ci left: 3.276582e-02	ci right 3.348283e-02	k: 31798	n:960000
CLEC12B   960000 perm   521 sec   (1842 perm/sec)   p_kst 3.312292e-02   p_cons 2.156250e-03   p_joint 3.385417e-04

Joint ci ratio: 2.157521e-01	ci left: 3.035165e-04	ci right 3.778710e-04	k: 329	n:970000
Cons ci ratio: 8.555085e-02	ci left: 2.067374e-03	ci right 2.253144e-03	k: 2094	n:970000
KS ci ratio: 2.151145e-02	ci left: 3.274487e-02	ci right 3.345793e-02	k: 32107	n:970000
CLEC12B   970000 perm   530 sec   (1829 perm/sec)   p_kst 3.310000e-02   p_cons 2.158763e-03   p_joint 3.391753e-04

Joint ci ratio: 2.151014e-01	ci left: 3.023501e-04	ci right 3.761660e-04	k: 331	n:980000
Cons ci ratio: 8.526676e-02	ci left: 2.060259e-03	ci right 2.244744e-03	k: 2108	n:980000
KS ci ratio: 2.140245e-02	ci left: 3.274363e-02	ci right 3.345301e-02	k: 32435	n:980000
CLEC12B   980000 perm   540 sec   (1816 perm/sec)   p_kst 3.309694e-02   p_cons 2.151020e-03   p_joint 3.377551e-04

Joint ci ratio: 2.138171e-01	ci left: 3.031194e-04	ci right 3.766234e-04	k: 335	n:990000
Cons ci ratio: 8.486538e-02	ci left: 2.059221e-03	ci right 2.242702e-03	k: 2128	n:990000
KS ci ratio: 2.130618e-02	ci left: 3.270927e-02	ci right 3.341468e-02	k: 32730	n:990000
CLEC12B   990000 perm   549 sec   (1803 perm/sec)   p_kst 3.306061e-02   p_cons 2.149495e-03   p_joint 3.383838e-04

Joint ci ratio: 2.125556e-01	ci left: 3.038747e-04	ci right 3.770704e-04	k: 339	n:1000000
Cons ci ratio: 8.439094e-02	ci left: 2.062121e-03	ci right 2.244782e-03	k: 2152	n:1000000
KS ci ratio: 2.119627e-02	ci left: 3.272037e-02	ci right 3.342233e-02	k: 33070	n:1000000
CLEC12B   1000000 perm   559 sec   (1790 perm/sec)   p_kst 3.307000e-02   p_cons 2.152000e-03   p_joint 3.390000e-04

Joint ci ratio: 2.107043e-01	ci left: 3.064919e-04	ci right 3.795919e-04	k: 345	n:1010000
Cons ci ratio: 8.398238e-02	ci left: 2.062058e-03	ci right 2.243786e-03	k: 2173	n:1010000
KS ci ratio: 2.109981e-02	ci left: 3.269580e-02	ci right 3.339401e-02	k: 33374	n:1010000
CLEC12B   1010000 perm   568 sec   (1778 perm/sec)   p_kst 3.304356e-02   p_cons 2.151485e-03   p_joint 3.415842e-04

Joint ci ratio: 2.091980e-01	ci left: 3.081313e-04	ci right 3.810297e-04	k: 350	n:1020000
Cons ci ratio: 8.369441e-02	ci left: 2.056239e-03	ci right 2.236803e-03	k: 2188	n:1020000
KS ci ratio: 2.099691e-02	ci left: 3.269513e-02	ci right 3.338988e-02	k: 33702	n:1020000
CLEC12B   1020000 perm   578 sec   (1766 perm/sec)   p_kst 3.304118e-02   p_cons 2.145098e-03   p_joint 3.431373e-04

Joint ci ratio: 2.080160e-01	ci left: 3.088204e-04	ci right 3.814165e-04	k: 354	n:1030000
Cons ci ratio: 8.329584e-02	ci left: 2.056238e-03	ci right 2.235900e-03	k: 2209	n:1030000
KS ci ratio: 2.088472e-02	ci left: 3.272733e-02	ci right 3.341899e-02	k: 34064	n:1030000
CLEC12B   1030000 perm   587 sec   (1754 perm/sec)   p_kst 3.307184e-02   p_cons 2.144660e-03   p_joint 3.436893e-04

Joint ci ratio: 2.071427e-01	ci left: 3.085856e-04	ci right 3.807834e-04	k: 357	n:1040000
Cons ci ratio: 8.290291e-02	ci left: 2.056239e-03	ci right 2.235013e-03	k: 2230	n:1040000
KS ci ratio: 2.078711e-02	ci left: 3.271968e-02	ci right 3.340792e-02	k: 34385	n:1040000
CLEC12B   1040000 perm   597 sec   (1743 perm/sec)   p_kst 3.306250e-02   p_cons 2.144231e-03   p_joint 3.432692e-04

Joint ci ratio: 2.057110e-01	ci left: 3.101625e-04	ci right 3.821645e-04	k: 362	n:1050000
Cons ci ratio: 8.251548e-02	ci left: 2.056242e-03	ci right 2.234141e-03	k: 2251	n:1050000
KS ci ratio: 2.068407e-02	ci left: 3.273304e-02	ci right 3.341811e-02	k: 34728	n:1050000
CLEC12B   1050000 perm   606 sec   (1732 perm/sec)   p_kst 3.307429e-02   p_cons 2.143810e-03   p_joint 3.447619e-04

Joint ci ratio: 1.857867e-01	ci left: 3.808148e-04	ci right 4.596928e-04	k: 444	n:1060000
Cons ci ratio: 8.224229e-02	ci left: 2.050703e-03	ci right 2.227507e-03	k: 2266	n:1060000
KS ci ratio: 2.059349e-02	ci left: 3.271237e-02	ci right 3.339396e-02	k: 35035	n:1060000
CLEC12B   1060000 perm   616 sec   (1721 perm/sec)   p_kst 3.305189e-02   p_cons 2.137736e-03   p_joint 4.188679e-04

Joint ci ratio: 1.847516e-01	ci left: 3.817119e-04	ci right 4.602860e-04	k: 449	n:1070000
Cons ci ratio: 8.191785e-02	ci left: 2.048015e-03	ci right 2.223857e-03	k: 2284	n:1070000
KS ci ratio: 2.049330e-02	ci left: 3.272556e-02	ci right 3.340407e-02	k: 35378	n:1070000
CLEC12B   1070000 perm   626 sec   (1710 perm/sec)   p_kst 3.306355e-02   p_cons 2.134579e-03   p_joint 4.196262e-04

Joint ci ratio: 1.839360e-01	ci left: 3.817104e-04	ci right 4.598985e-04	k: 453	n:1080000
Cons ci ratio: 8.147323e-02	ci left: 2.051727e-03	ci right 2.226886e-03	k: 2309	n:1080000
KS ci ratio: 2.039278e-02	ci left: 3.274404e-02	ci right 3.341957e-02	k: 35727	n:1080000
CLEC12B   1080000 perm   636 sec   (1699 perm/sec)   p_kst 3.308056e-02   p_cons 2.137963e-03   p_joint 4.194444e-04

Joint ci ratio: 1.829313e-01	ci left: 3.825850e-04	ci right 4.604768e-04	k: 458	n:1090000
Cons ci ratio: 8.100101e-02	ci left: 2.057171e-03	ci right 2.231730e-03	k: 2336	n:1090000
KS ci ratio: 2.029489e-02	ci left: 3.275855e-02	ci right 3.343109e-02	k: 36072	n:1090000
CLEC12B   1090000 perm   646 sec   (1688 perm/sec)   p_kst 3.309358e-02   p_cons 2.143119e-03   p_joint 4.201835e-04

Joint ci ratio: 1.815519e-01	ci left: 3.851803e-04	ci right 4.629442e-04	k: 465	n:1100000
Cons ci ratio: 8.065667e-02	ci left: 2.056284e-03	ci right 2.229990e-03	k: 2356	n:1100000
KS ci ratio: 2.020586e-02	ci left: 3.274927e-02	ci right 3.341864e-02	k: 36391	n:1100000
CLEC12B   1100000 perm   656 sec   (1677 perm/sec)   p_kst 3.308273e-02   p_cons 2.141818e-03   p_joint 4.227273e-04

Joint ci ratio: 1.803942e-01	ci left: 3.868708e-04	ci right 4.644235e-04	k: 471	n:1110000
Cons ci ratio: 8.040147e-02	ci left: 2.051000e-03	ci right 2.223686e-03	k: 2371	n:1110000
KS ci ratio: 2.012168e-02	ci left: 3.272852e-02	ci right 3.339465e-02	k: 36697	n:1110000
CLEC12B   1110000 perm   666 sec   (1667 perm/sec)   p_kst 3.306036e-02   p_cons 2.136036e-03   p_joint 4.243243e-04

Joint ci ratio: 1.916976e-01	ci left: 3.374449e-04	ci right 4.098228e-04	k: 417	n:1120000
Cons ci ratio: 8.004792e-02	ci left: 2.051062e-03	ci right 2.222958e-03	k: 2392	n:1120000
KS ci ratio: 2.003574e-02	ci left: 3.271702e-02	ci right 3.338004e-02	k: 37013	n:1120000
CLEC12B   1120000 perm   676 sec   (1656 perm/sec)   p_kst 3.304732e-02   p_cons 2.135714e-03   p_joint 3.723214e-04

Joint ci ratio: 1.912408e-01	ci left: 3.361437e-04	ci right 4.080507e-04	k: 419	n:1130000
Cons ci ratio: 7.978184e-02	ci left: 2.046787e-03	ci right 2.217728e-03	k: 2408	n:1130000
KS ci ratio: 1.994647e-02	ci left: 3.271983e-02	ci right 3.337991e-02	k: 37345	n:1130000
CLEC12B   1130000 perm   686 sec   (1646 perm/sec)   p_kst 3.304867e-02   p_cons 2.130973e-03   p_joint 3.707965e-04

Joint ci ratio: 1.901124e-01	ci left: 3.373717e-04	ci right 4.090664e-04	k: 424	n:1140000
Cons ci ratio: 7.945275e-02	ci left: 2.046027e-03	ci right 2.216168e-03	k: 2428	n:1140000
KS ci ratio: 1.986029e-02	ci left: 3.271648e-02	ci right 3.337362e-02	k: 37670	n:1140000
CLEC12B   1140000 perm   697 sec   (1636 perm/sec)   p_kst 3.304386e-02   p_cons 2.129825e-03   p_joint 3.719298e-04

Joint ci ratio: 1.890038e-01	ci left: 3.385795e-04	ci right 4.100632e-04	k: 429	n:1150000
Cons ci ratio: 7.909534e-02	ci left: 2.046987e-03	ci right 2.216406e-03	k: 2450	n:1150000
KS ci ratio: 1.977495e-02	ci left: 3.271406e-02	ci right 3.336829e-02	k: 37996	n:1150000
CLEC12B   1150000 perm   707 sec   (1626 perm/sec)   p_kst 3.304000e-02   p_cons 2.130435e-03   p_joint 3.730435e-04

Joint ci ratio: 1.879143e-01	ci left: 3.397677e-04	ci right 4.110416e-04	k: 434	n:1160000
Cons ci ratio: 7.875868e-02	ci left: 2.047086e-03	ci right 2.215760e-03	k: 2471	n:1160000
KS ci ratio: 1.968565e-02	ci left: 3.272799e-02	ci right 3.337951e-02	k: 38341	n:1160000
CLEC12B   1160000 perm   718 sec   (1616 perm/sec)   p_kst 3.305259e-02   p_cons 2.130172e-03   p_joint 3.741379e-04

Joint ci ratio: 1.754458e-01	ci left: 3.890807e-04	ci right 4.647102e-04	k: 498	n:1170000
Cons ci ratio: 7.839476e-02	ci left: 2.048862e-03	ci right 2.216866e-03	k: 2494	n:1170000
KS ci ratio: 1.960568e-02	ci left: 3.271532e-02	ci right 3.336392e-02	k: 38655	n:1170000
CLEC12B   1170000 perm   729 sec   (1606 perm/sec)   p_kst 3.303846e-02   p_cons 2.131624e-03   p_joint 4.256410e-04

Joint ci ratio: 1.747468e-01	ci left: 3.890247e-04	ci right 4.643103e-04	k: 502	n:1180000
Cons ci ratio: 7.812919e-02	ci left: 2.045623e-03	ci right 2.212768e-03	k: 2511	n:1180000
KS ci ratio: 1.952771e-02	ci left: 3.269950e-02	ci right 3.334517e-02	k: 38965	n:1180000
CLEC12B   1180000 perm   739 sec   (1596 perm/sec)   p_kst 3.302119e-02   p_cons 2.127966e-03   p_joint 4.254237e-04

Joint ci ratio: 1.744006e-01	ci left: 3.873628e-04	ci right 4.621626e-04	k: 504	n:1190000
Cons ci ratio: 7.774316e-02	ci left: 2.049032e-03	ci right 2.215591e-03	k: 2536	n:1190000
KS ci ratio: 1.943736e-02	ci left: 3.272744e-02	ci right 3.337064e-02	k: 39327	n:1190000
CLEC12B   1190000 perm   750 sec   (1586 perm/sec)   p_kst 3.304790e-02   p_cons 2.131092e-03   p_joint 4.235294e-04

Joint ci ratio: 1.740565e-01	ci left: 3.857287e-04	ci right 4.600505e-04	k: 506	n:1200000
Cons ci ratio: 7.727218e-02	ci left: 2.057290e-03	ci right 2.223461e-03	k: 2567	n:1200000
KS ci ratio: 1.936440e-02	ci left: 3.270183e-02	ci right 3.334209e-02	k: 39625	n:1200000
CLEC12B   1200000 perm   761 sec   (1577 perm/sec)   p_kst 3.302083e-02   p_cons 2.139167e-03   p_joint 4.216667e-04

Joint ci ratio: 1.590679e-01	ci left: 4.617489e-04	ci right 5.423263e-04	k: 606	n:1210000
Cons ci ratio: 7.697307e-02	ci left: 2.056498e-03	ci right 2.221933e-03	k: 2587	n:1210000
KS ci ratio: 1.928652e-02	ci left: 3.269557e-02	ci right 3.333311e-02	k: 39946	n:1210000
CLEC12B   1210000 perm   772 sec   (1567 perm/sec)   p_kst 3.301322e-02   p_cons 2.138017e-03   p_joint 5.008264e-04

Joint ci ratio: 1.648774e-01	ci left: 4.249321e-04	ci right 5.020618e-04	k: 564	n:1220000
Cons ci ratio: 7.658916e-02	ci left: 2.060544e-03	ci right 2.225441e-03	k: 2613	n:1220000
KS ci ratio: 1.920686e-02	ci left: 3.269840e-02	ci right 3.333333e-02	k: 40278	n:1220000
CLEC12B   1220000 perm   783 sec   (1558 perm/sec)   p_kst 3.301475e-02   p_cons 2.141803e-03   p_joint 4.622951e-04

Joint ci ratio: 1.644415e-01	ci left: 4.238159e-04	ci right 5.005195e-04	k: 567	n:1230000
Cons ci ratio: 7.634146e-02	ci left: 2.057348e-03	ci right 2.221433e-03	k: 2630	n:1230000
KS ci ratio: 1.913670e-02	ci left: 3.267286e-02	ci right 3.330495e-02	k: 40575	n:1230000
CLEC12B   1230000 perm   794 sec   (1548 perm/sec)   p_kst 3.298780e-02   p_cons 2.138211e-03   p_joint 4.609756e-04

Joint ci ratio: 1.735447e-01	ci left: 3.755998e-04	ci right 4.477349e-04	k: 509	n:1240000
Cons ci ratio: 7.611055e-02	ci left: 2.053414e-03	ci right 2.216668e-03	k: 2646	n:1240000
KS ci ratio: 1.905911e-02	ci left: 3.267503e-02	ci right 3.330457e-02	k: 40906	n:1240000
CLEC12B   1240000 perm   806 sec   (1539 perm/sec)   p_kst 3.298871e-02   p_cons 2.133871e-03   p_joint 4.104839e-04

Joint ci ratio: 1.728682e-01	ci left: 3.756563e-04	ci right 4.474916e-04	k: 513	n:1250000
Cons ci ratio: 7.572516e-02	ci left: 2.058176e-03	ci right 2.220944e-03	k: 2673	n:1250000
KS ci ratio: 1.898698e-02	ci left: 3.266204e-02	ci right 3.328892e-02	k: 41218	n:1250000
CLEC12B   1250000 perm   817 sec   (1531 perm/sec)   p_kst 3.297440e-02   p_cons 2.138400e-03   p_joint 4.104000e-04

Joint ci ratio: 1.723660e-01	ci left: 3.749530e-04	ci right 4.464238e-04	k: 516	n:1260000
Cons ci ratio: 7.551384e-02	ci left: 2.053521e-03	ci right 2.215448e-03	k: 2688	n:1260000
KS ci ratio: 1.891308e-02	ci left: 3.265795e-02	ci right 3.328229e-02	k: 41541	n:1260000
CLEC12B   1260000 perm   828 sec   (1522 perm/sec)   p_kst 3.296905e-02   p_cons 2.133333e-03   p_joint 4.095238e-04

Joint ci ratio: 1.717030e-01	ci left: 3.750146e-04	ci right 4.461938e-04	k: 520	n:1270000
Cons ci ratio: 7.524854e-02	ci left: 2.052030e-03	ci right 2.213246e-03	k: 2707	n:1270000
KS ci ratio: 1.883910e-02	ci left: 3.265707e-02	ci right 3.327892e-02	k: 41868	n:1270000
CLEC12B   1270000 perm   839 sec   (1513 perm/sec)   p_kst 3.296693e-02   p_cons 2.131496e-03   p_joint 4.094488e-04

Joint ci ratio: 1.710477e-01	ci left: 3.750757e-04	ci right 4.459668e-04	k: 524	n:1280000
Cons ci ratio: 7.490347e-02	ci left: 2.055164e-03	ci right 2.215853e-03	k: 2732	n:1280000
KS ci ratio: 1.876483e-02	ci left: 3.266009e-02	ci right 3.327952e-02	k: 42200	n:1280000
CLEC12B   1280000 perm   851 sec   (1504 perm/sec)   p_kst 3.296875e-02   p_cons 2.134375e-03   p_joint 4.093750e-04

Joint ci ratio: 1.722003e-01	ci left: 3.669748e-04	ci right 4.368506e-04	k: 517	n:1290000
Cons ci ratio: 7.460378e-02	ci left: 2.055968e-03	ci right 2.216048e-03	k: 2754	n:1290000
KS ci ratio: 1.870326e-02	ci left: 3.262294e-02	ci right 3.323962e-02	k: 42480	n:1290000
CLEC12B   1290000 perm   862 sec   (1496 perm/sec)   p_kst 3.293023e-02   p_cons 2.134884e-03   p_joint 4.007752e-04

Joint ci ratio: 1.713751e-01	ci left: 3.678327e-04	ci right 4.375016e-04	k: 522	n:1300000
Cons ci ratio: 7.429426e-02	ci left: 2.057515e-03	ci right 2.217023e-03	k: 2777	n:1300000
KS ci ratio: 1.863035e-02	ci left: 3.262696e-02	ci right 3.324128e-02	k: 42813	n:1300000
CLEC12B   1300000 perm   874 sec   (1487 perm/sec)   p_kst 3.293308e-02   p_cons 2.136154e-03   p_joint 4.015385e-04

Joint ci ratio: 1.707235e-01	ci left: 3.679475e-04	ci right 4.373459e-04	k: 526	n:1310000
Cons ci ratio: 7.397532e-02	ci left: 2.059790e-03	ci right 2.218760e-03	k: 2801	n:1310000
KS ci ratio: 1.856030e-02	ci left: 3.262407e-02	ci right 3.323601e-02	k: 43137	n:1310000
CLEC12B   1310000 perm   886 sec   (1479 perm/sec)   p_kst 3.292901e-02   p_cons 2.138168e-03   p_joint 4.015267e-04

Joint ci ratio: 1.704006e-01	ci left: 3.666105e-04	ci right 4.356125e-04	k: 528	n:1320000
Cons ci ratio: 7.372585e-02	ci left: 2.058314e-03	ci right 2.216611e-03	k: 2820	n:1320000
KS ci ratio: 1.849168e-02	ci left: 3.261898e-02	ci right 3.322853e-02	k: 43458	n:1320000
CLEC12B   1320000 perm   898 sec   (1470 perm/sec)   p_kst 3.292273e-02   p_cons 2.136364e-03   p_joint 4.000000e-04

Joint ci ratio: 1.696009e-01	ci left: 3.674535e-04	ci right 4.362564e-04	k: 533	n:1330000
Cons ci ratio: 7.344002e-02	ci left: 2.059075e-03	ci right 2.216790e-03	k: 2842	n:1330000
KS ci ratio: 1.842100e-02	ci left: 3.262369e-02	ci right 3.323098e-02	k: 43792	n:1330000
CLEC12B   1330000 perm   910 sec   (1462 perm/sec)   p_kst 3.292632e-02   p_cons 2.136842e-03   p_joint 4.007519e-04

Joint ci ratio: 1.691265e-01	ci left: 3.668552e-04	ci right 4.353344e-04	k: 536	n:1340000
Cons ci ratio: 7.317029e-02	ci left: 2.059093e-03	ci right 2.216206e-03	k: 2863	n:1340000
KS ci ratio: 1.835133e-02	ci left: 3.262760e-02	ci right 3.323263e-02	k: 44125	n:1340000
CLEC12B   1340000 perm   922 sec   (1454 perm/sec)   p_kst 3.292910e-02   p_cons 2.136567e-03   p_joint 4.000000e-04

Joint ci ratio: 1.685001e-01	ci left: 3.669755e-04	ci right 4.351977e-04	k: 540	n:1350000
Cons ci ratio: 7.281504e-02	ci left: 2.064203e-03	ci right 2.220908e-03	k: 2891	n:1350000
KS ci ratio: 1.828330e-02	ci left: 3.262850e-02	ci right 3.323129e-02	k: 44454	n:1350000
CLEC12B   1350000 perm   934 sec   (1446 perm/sec)   p_kst 3.292889e-02   p_cons 2.141481e-03   p_joint 4.000000e-04

Joint ci ratio: 1.678806e-01	ci left: 3.670946e-04	ci right 4.350626e-04	k: 544	n:1360000
Cons ci ratio: 7.257708e-02	ci left: 2.062741e-03	ci right 2.218803e-03	k: 2910	n:1360000
KS ci ratio: 1.821224e-02	ci left: 3.264257e-02	ci right 3.324325e-02	k: 44801	n:1360000
CLEC12B   1360000 perm   946 sec   (1437 perm/sec)   p_kst 3.294191e-02   p_cons 2.139706e-03   p_joint 4.000000e-04

Joint ci ratio: 1.674205e-01	ci left: 3.665129e-04	ci right 4.341685e-04	k: 547	n:1370000
Cons ci ratio: 7.244062e-02	ci left: 2.055568e-03	ci right 2.210782e-03	k: 2921	n:1370000
KS ci ratio: 1.815052e-02	ci left: 3.262664e-02	ci right 3.322497e-02	k: 45107	n:1370000
CLEC12B   1370000 perm   958 sec   (1430 perm/sec)   p_kst 3.292482e-02   p_cons 2.132117e-03   p_joint 3.992701e-04

Joint ci ratio: 1.666619e-01	ci left: 3.673288e-04	ci right 4.347969e-04	k: 552	n:1380000
Cons ci ratio: 7.216943e-02	ci left: 2.056327e-03	ci right 2.210992e-03	k: 2943	n:1380000
KS ci ratio: 1.808243e-02	ci left: 3.263548e-02	ci right 3.323170e-02	k: 45447	n:1380000
CLEC12B   1380000 perm   971 sec   (1422 perm/sec)   p_kst 3.293261e-02   p_cons 2.132609e-03   p_joint 4.000000e-04

Joint ci ratio: 1.657649e-01	ci left: 3.688231e-04	ci right 4.361648e-04	k: 558	n:1390000
Cons ci ratio: 7.174387e-02	ci left: 2.066260e-03	ci right 2.220718e-03	k: 2978	n:1390000
KS ci ratio: 1.801204e-02	ci left: 3.265494e-02	ci right 3.324917e-02	k: 45802	n:1390000
CLEC12B   1390000 perm   983 sec   (1414 perm/sec)   p_kst 3.295108e-02   p_cons 2.142446e-03   p_joint 4.014388e-04

Joint ci ratio: 1.656170e-01	ci left: 3.668733e-04	ci right 4.337932e-04	k: 559	n:1400000
Cons ci ratio: 7.151623e-02	ci left: 2.064829e-03	ci right 2.218670e-03	k: 2997	n:1400000
KS ci ratio: 1.795052e-02	ci left: 3.264567e-02	ci right 3.323769e-02	k: 46117	n:1400000
CLEC12B   1400000 perm   995 sec   (1406 perm/sec)   p_kst 3.294071e-02   p_cons 2.140714e-03   p_joint 3.992857e-04

Joint ci ratio: 1.648825e-01	ci left: 3.676709e-04	ci right 4.344093e-04	k: 564	n:1410000
Cons ci ratio: 7.118442e-02	ci left: 2.069689e-03	ci right 2.223147e-03	k: 3025	n:1410000
KS ci ratio: 1.789102e-02	ci left: 3.263160e-02	ci right 3.322138e-02	k: 46425	n:1410000
CLEC12B   1410000 perm   1008 sec   (1399 perm/sec)   p_kst 3.292553e-02   p_cons 2.145390e-03   p_joint 4.000000e-04

Joint ci ratio: 1.647370e-01	ci left: 3.657568e-04	ci right 4.320833e-04	k: 565	n:1420000
Cons ci ratio: 7.092704e-02	ci left: 2.070332e-03	ci right 2.223260e-03	k: 3047	n:1420000
KS ci ratio: 1.782619e-02	ci left: 3.263877e-02	ci right 3.322652e-02	k: 46763	n:1420000
CLEC12B   1420000 perm   1021 sec   (1391 perm/sec)   p_kst 3.293169e-02   p_cons 2.145775e-03   p_joint 3.978873e-04

Joint ci ratio: 1.633004e-01	ci left: 3.699051e-04	ci right 4.363415e-04	k: 575	n:1430000
Cons ci ratio: 7.075332e-02	ci left: 2.066157e-03	ci right 2.218388e-03	k: 3062	n:1430000
KS ci ratio: 1.776440e-02	ci left: 3.263748e-02	ci right 3.322315e-02	k: 47089	n:1430000
CLEC12B   1430000 perm   1034 sec   (1384 perm/sec)   p_kst 3.292937e-02   p_cons 2.141259e-03   p_joint 4.020979e-04

Joint ci ratio: 1.623169e-01	ci left: 3.719994e-04	ci right 4.383703e-04	k: 582	n:1440000
Cons ci ratio: 7.046624e-02	ci left: 2.068864e-03	ci right 2.220650e-03	k: 3087	n:1440000
KS ci ratio: 1.770170e-02	ci left: 3.264175e-02	ci right 3.322541e-02	k: 47423	n:1440000
CLEC12B   1440000 perm   1046 sec   (1376 perm/sec)   p_kst 3.293264e-02   p_cons 2.143750e-03   p_joint 4.041667e-04

Joint ci ratio: 1.620393e-01	ci left: 3.707572e-04	ci right 4.367823e-04	k: 584	n:1450000
Cons ci ratio: 7.023919e-02	ci left: 2.068146e-03	ci right 2.219371e-03	k: 3107	n:1450000
KS ci ratio: 1.763413e-02	ci left: 3.266588e-02	ci right 3.324771e-02	k: 47786	n:1450000
CLEC12B   1450000 perm   1059 sec   (1369 perm/sec)   p_kst 3.295586e-02   p_cons 2.142759e-03   p_joint 4.027586e-04

Joint ci ratio: 1.613512e-01	ci left: 3.715038e-04	ci right 4.373538e-04	k: 589	n:1460000
Cons ci ratio: 6.995830e-02	ci left: 2.070804e-03	ci right 2.221593e-03	k: 3132	n:1460000
KS ci ratio: 1.757355e-02	ci left: 3.266717e-02	ci right 3.324701e-02	k: 48116	n:1460000
CLEC12B   1460000 perm   1072 sec   (1362 perm/sec)   p_kst 3.295616e-02   p_cons 2.145205e-03   p_joint 4.034247e-04

Joint ci ratio: 1.610785e-01	ci left: 3.702822e-04	ci right 4.357940e-04	k: 591	n:1470000
Cons ci ratio: 6.966970e-02	ci left: 2.074095e-03	ci right 2.224476e-03	k: 3158	n:1470000
KS ci ratio: 1.751565e-02	ci left: 3.266100e-02	ci right 3.323880e-02	k: 48435	n:1470000
CLEC12B   1470000 perm   1085 sec   (1354 perm/sec)   p_kst 3.294898e-02   p_cons 2.148299e-03   p_joint 4.020408e-04

Joint ci ratio: 1.602683e-01	ci left: 3.716714e-04	ci right 4.370663e-04	k: 597	n:1480000
Cons ci ratio: 6.943929e-02	ci left: 2.074024e-03	ci right 2.223881e-03	k: 3179	n:1480000
KS ci ratio: 1.745462e-02	ci left: 3.266837e-02	ci right 3.324427e-02	k: 48774	n:1480000
CLEC12B   1480000 perm   1098 sec   (1347 perm/sec)   p_kst 3.295541e-02   p_cons 2.147973e-03   p_joint 4.033784e-04

Joint ci ratio: 1.647385e-01	ci left: 3.485733e-04	ci right 4.117844e-04	k: 565	n:1490000
Cons ci ratio: 6.921115e-02	ci left: 2.073954e-03	ci right 2.223294e-03	k: 3200	n:1490000
KS ci ratio: 1.739459e-02	ci left: 3.267431e-02	ci right 3.324831e-02	k: 49111	n:1490000
CLEC12B   1490000 perm   1112 sec   (1340 perm/sec)   p_kst 3.296040e-02   p_cons 2.147651e-03   p_joint 3.791946e-04

Joint ci ratio: 1.638721e-01	ci left: 3.500850e-04	ci right 4.132035e-04	k: 571	n:1500000
Cons ci ratio: 6.891027e-02	ci left: 2.078472e-03	ci right 2.227461e-03	k: 3228	n:1500000
KS ci ratio: 1.733553e-02	ci left: 3.267885e-02	ci right 3.325096e-02	k: 49446	n:1500000
CLEC12B   1500000 perm   1125 sec   (1333 perm/sec)   p_kst 3.296400e-02   p_cons 2.152000e-03   p_joint 3.806667e-04

Joint ci ratio: 1.635865e-01	ci left: 3.490368e-04	ci right 4.118458e-04	k: 573	n:1510000
Cons ci ratio: 6.875092e-02	ci left: 2.074470e-03	ci right 2.222814e-03	k: 3243	n:1510000
KS ci ratio: 1.728156e-02	ci left: 3.266684e-02	ci right 3.323694e-02	k: 49756	n:1510000
CLEC12B   1510000 perm   1138 sec   (1327 perm/sec)   p_kst 3.295099e-02   p_cons 2.147682e-03   p_joint 3.794702e-04

Joint ci ratio: 1.759844e-01	ci left: 2.976016e-04	ci right 3.556458e-04	k: 495	n:1520000
Cons ci ratio: 6.846646e-02	ci left: 2.078280e-03	ci right 2.226258e-03	k: 3270	n:1520000
KS ci ratio: 1.722098e-02	ci left: 3.268120e-02	ci right 3.324953e-02	k: 50106	n:1520000
CLEC12B   1520000 perm   1152 sec   (1320 perm/sec)   p_kst 3.296447e-02   p_cons 2.151316e-03   p_joint 3.256579e-04

Joint ci ratio: 1.756308e-01	ci left: 2.969062e-04	ci right 3.546860e-04	k: 497	n:1530000
Cons ci ratio: 6.814410e-02	ci left: 2.084612e-03	ci right 2.232315e-03	k: 3301	n:1530000
KS ci ratio: 1.716789e-02	ci left: 3.266999e-02	ci right 3.323636e-02	k: 50417	n:1530000
CLEC12B   1530000 perm   1165 sec   (1313 perm/sec)   p_kst 3.295229e-02   p_cons 2.157516e-03   p_joint 3.248366e-04

Joint ci ratio: 1.745820e-01	ci left: 2.987036e-04	ci right 3.564495e-04	k: 503	n:1540000
Cons ci ratio: 6.793869e-02	ci left: 2.083842e-03	ci right 2.231027e-03	k: 3321	n:1540000
KS ci ratio: 1.711599e-02	ci left: 3.265634e-02	ci right 3.322074e-02	k: 50724	n:1540000
CLEC12B   1540000 perm   1179 sec   (1307 perm/sec)   p_kst 3.293766e-02   p_cons 2.156494e-03   p_joint 3.266234e-04

Joint ci ratio: 1.819541e-01	ci left: 2.721207e-04	ci right 3.271940e-04	k: 463	n:1550000
Cons ci ratio: 6.773514e-02	ci left: 2.083082e-03	ci right 2.229756e-03	k: 3341	n:1550000
KS ci ratio: 1.706196e-02	ci left: 3.265251e-02	ci right 3.321505e-02	k: 51046	n:1550000
CLEC12B   1550000 perm   1192 sec   (1300 perm/sec)   p_kst 3.293290e-02   p_cons 2.155484e-03   p_joint 2.987097e-04

Joint ci ratio: 1.737225e-01	ci left: 2.979395e-04	ci right 3.552244e-04	k: 508	n:1560000
Cons ci ratio: 6.751327e-02	ci left: 2.083593e-03	ci right 2.229803e-03	k: 3363	n:1560000
KS ci ratio: 1.701050e-02	ci left: 3.264106e-02	ci right 3.320170e-02	k: 51356	n:1560000
CLEC12B   1560000 perm   1206 sec   (1294 perm/sec)   p_kst 3.292051e-02   p_cons 2.155769e-03   p_joint 3.256410e-04

Joint ci ratio: 1.733823e-01	ci left: 2.972603e-04	ci right 3.542910e-04	k: 510	n:1570000
Cons ci ratio: 6.722398e-02	ci left: 2.088482e-03	ci right 2.234383e-03	k: 3392	n:1570000
KS ci ratio: 1.695509e-02	ci left: 3.264626e-02	ci right 3.320514e-02	k: 51692	n:1570000
CLEC12B   1570000 perm   1220 sec   (1287 perm/sec)   p_kst 3.292484e-02   p_cons 2.160510e-03   p_joint 3.248408e-04

Joint ci ratio: 1.532524e-01	ci left: 3.822015e-04	ci right 4.462353e-04	k: 653	n:1580000
Cons ci ratio: 6.690898e-02	ci left: 2.095178e-03	ci right 2.240834e-03	k: 3424	n:1580000
KS ci ratio: 1.690257e-02	ci left: 3.264258e-02	ci right 3.319964e-02	k: 52014	n:1580000
CLEC12B   1580000 perm   1233 sec   (1281 perm/sec)   p_kst 3.292025e-02   p_cons 2.167089e-03   p_joint 4.132911e-04

Joint ci ratio: 1.529021e-01	ci left: 3.816122e-04	ci right 4.453878e-04	k: 656	n:1590000
Cons ci ratio: 6.666605e-02	ci left: 2.097461e-03	ci right 2.242726e-03	k: 3449	n:1590000
KS ci ratio: 1.684487e-02	ci left: 3.266023e-02	ci right 3.321568e-02	k: 52370	n:1590000
CLEC12B   1590000 perm   1247 sec   (1275 perm/sec)   p_kst 3.293711e-02   p_cons 2.169182e-03   p_joint 4.125786e-04

Joint ci ratio: 1.526700e-01	ci left: 3.804293e-04	ci right 4.439019e-04	k: 658	n:1600000
Cons ci ratio: 6.656988e-02	ci left: 2.090498e-03	ci right 2.235064e-03	k: 3459	n:1600000
KS ci ratio: 1.679386e-02	ci left: 3.265464e-02	ci right 3.320830e-02	k: 52689	n:1600000
CLEC12B   1600000 perm   1261 sec   (1269 perm/sec)   p_kst 3.293062e-02   p_cons 2.161875e-03   p_joint 4.112500e-04

Joint ci ratio: 1.523238e-01	ci left: 3.798586e-04	ci right 4.430791e-04	k: 661	n:1610000
Cons ci ratio: 6.641661e-02	ci left: 2.087286e-03	ci right 2.231284e-03	k: 3475	n:1610000
KS ci ratio: 1.673874e-02	ci left: 3.266645e-02	ci right 3.321847e-02	k: 53036	n:1610000
CLEC12B   1610000 perm   1275 sec   (1263 perm/sec)   p_kst 3.294161e-02   p_cons 2.158385e-03   p_joint 4.105590e-04

Joint ci ratio: 1.520943e-01	ci left: 3.787014e-04	ci right 4.416256e-04	k: 663	n:1620000
Cons ci ratio: 6.622639e-02	ci left: 2.086542e-03	ci right 2.230061e-03	k: 3495	n:1620000
KS ci ratio: 1.669013e-02	ci left: 3.265536e-02	ci right 3.320557e-02	k: 53346	n:1620000
CLEC12B   1620000 perm   1289 sec   (1257 perm/sec)   p_kst 3.292963e-02   p_cons 2.157407e-03   p_joint 4.092593e-04

Joint ci ratio: 1.514116e-01	ci left: 3.799193e-04	ci right 4.427369e-04	k: 669	n:1630000
Cons ci ratio: 6.604721e-02	ci left: 2.085205e-03	ci right 2.228229e-03	k: 3514	n:1630000
KS ci ratio: 1.663698e-02	ci left: 3.266335e-02	ci right 3.321193e-02	k: 53687	n:1630000
CLEC12B   1630000 perm   1304 sec   (1250 perm/sec)   p_kst 3.293681e-02   p_cons 2.155828e-03   p_joint 4.104294e-04

Joint ci ratio: 1.511863e-01	ci left: 3.787760e-04	ci right 4.413030e-04	k: 671	n:1640000
Cons ci ratio: 6.582283e-02	ci left: 2.086883e-03	ci right 2.229518e-03	k: 3538	n:1640000
KS ci ratio: 1.658783e-02	ci left: 3.265789e-02	ci right 3.320474e-02	k: 54006	n:1640000
CLEC12B   1640000 perm   1318 sec   (1245 perm/sec)   p_kst 3.293049e-02   p_cons 2.157317e-03   p_joint 4.091463e-04

Joint ci ratio: 1.525552e-01	ci left: 3.694839e-04	ci right 4.310797e-04	k: 659	n:1650000
Cons ci ratio: 6.560995e-02	ci left: 2.087946e-03	ci right 2.230174e-03	k: 3561	n:1650000
KS ci ratio: 1.653565e-02	ci left: 3.266577e-02	ci right 3.321102e-02	k: 54347	n:1650000
CLEC12B   1650000 perm   1332 sec   (1239 perm/sec)   p_kst 3.293758e-02   p_cons 2.158182e-03   p_joint 3.993939e-04

Joint ci ratio: 1.520950e-01	ci left: 3.695759e-04	ci right 4.309842e-04	k: 663	n:1660000
Cons ci ratio: 6.543571e-02	ci left: 2.086626e-03	ci right 2.228373e-03	k: 3580	n:1660000
KS ci ratio: 1.648505e-02	ci left: 3.266937e-02	ci right 3.321299e-02	k: 54681	n:1660000
CLEC12B   1660000 perm   1346 sec   (1233 perm/sec)   p_kst 3.294036e-02   p_cons 2.156627e-03   p_joint 3.993976e-04

Joint ci ratio: 1.517526e-01	ci left: 3.690910e-04	ci right 4.302681e-04	k: 666	n:1670000
Cons ci ratio: 6.523562e-02	ci left: 2.087090e-03	ci right 2.228418e-03	k: 3602	n:1670000
KS ci ratio: 1.643491e-02	ci left: 3.267292e-02	ci right 3.321493e-02	k: 55015	n:1670000
CLEC12B   1670000 perm   1361 sec   (1227 perm/sec)   p_kst 3.294311e-02   p_cons 2.156886e-03   p_joint 3.988024e-04

Joint ci ratio: 1.511870e-01	ci left: 3.697574e-04	ci right 4.307959e-04	k: 671	n:1680000
Cons ci ratio: 6.506434e-02	ci left: 2.085792e-03	ci right 2.226647e-03	k: 3621	n:1680000
KS ci ratio: 1.638599e-02	ci left: 3.267347e-02	ci right 3.321386e-02	k: 55344	n:1680000
CLEC12B   1680000 perm   1375 sec   (1222 perm/sec)   p_kst 3.294286e-02   p_cons 2.155357e-03   p_joint 3.994048e-04

Joint ci ratio: 1.506276e-01	ci left: 3.704164e-04	ci right 4.313170e-04	k: 676	n:1690000
Cons ci ratio: 6.489441e-02	ci left: 2.084510e-03	ci right 2.224897e-03	k: 3640	n:1690000
KS ci ratio: 1.633993e-02	ci left: 3.266458e-02	ci right 3.320329e-02	k: 55657	n:1690000
CLEC12B   1690000 perm   1390 sec   (1216 perm/sec)   p_kst 3.293314e-02   p_cons 2.153846e-03   p_joint 4.000000e-04

Joint ci ratio: 1.502950e-01	ci left: 3.699357e-04	ci right 4.306110e-04	k: 679	n:1700000
Cons ci ratio: 6.472579e-02	ci left: 2.083243e-03	ci right 2.223167e-03	k: 3659	n:1700000
KS ci ratio: 1.629080e-02	ci left: 3.266928e-02	ci right 3.320643e-02	k: 55993	n:1700000
CLEC12B   1700000 perm   1405 sec   (1210 perm/sec)   p_kst 3.293706e-02   p_cons 2.152353e-03   p_joint 3.994118e-04

Joint ci ratio: 1.499646e-01	ci left: 3.694608e-04	ci right 4.299130e-04	k: 682	n:1710000
Cons ci ratio: 6.458488e-02	ci left: 2.080266e-03	ci right 2.219674e-03	k: 3675	n:1710000
KS ci ratio: 1.624017e-02	ci left: 3.268149e-02	ci right 3.321717e-02	k: 56342	n:1710000
CLEC12B   1710000 perm   1420 sec   (1204 perm/sec)   p_kst 3.294854e-02   p_cons 2.149123e-03   p_joint 3.988304e-04

Joint ci ratio: 1.495274e-01	ci left: 3.695512e-04	ci right 4.298262e-04	k: 686	n:1720000
Cons ci ratio: 6.436632e-02	ci left: 2.082472e-03	ci right 2.221538e-03	k: 3700	n:1720000
KS ci ratio: 1.619178e-02	ci left: 3.268662e-02	ci right 3.322077e-02	k: 56679	n:1720000
CLEC12B   1720000 perm   1435 sec   (1199 perm/sec)   p_kst 3.295291e-02   p_cons 2.151163e-03   p_joint 3.988372e-04

Joint ci ratio: 1.536080e-01	ci left: 3.473946e-04	ci right 4.057443e-04	k: 650	n:1730000
Cons ci ratio: 6.419313e-02	ci left: 2.081810e-03	ci right 2.220443e-03	k: 3720	n:1730000
KS ci ratio: 1.614105e-02	ci left: 3.270263e-02	ci right 3.323535e-02	k: 57035	n:1730000
CLEC12B   1730000 perm   1450 sec   (1193 perm/sec)   p_kst 3.296821e-02   p_cons 2.150289e-03   p_joint 3.757225e-04

Joint ci ratio: 1.530214e-01	ci left: 3.481614e-04	ci right 4.063962e-04	k: 655	n:1740000
Cons ci ratio: 6.402133e-02	ci left: 2.081155e-03	ci right 2.219361e-03	k: 3740	n:1740000
KS ci ratio: 1.609383e-02	ci left: 3.270644e-02	ci right 3.323764e-02	k: 57370	n:1740000
CLEC12B   1740000 perm   1465 sec   (1188 perm/sec)   p_kst 3.297126e-02   p_cons 2.149425e-03   p_joint 3.764368e-04

Joint ci ratio: 1.527887e-01	ci left: 3.472710e-04	ci right 4.052605e-04	k: 657	n:1750000
Cons ci ratio: 6.388496e-02	ci left: 2.078259e-03	ci right 2.215968e-03	k: 3756	n:1750000
KS ci ratio: 1.605004e-02	ci left: 3.269825e-02	ci right 3.322787e-02	k: 57684	n:1750000
CLEC12B   1750000 perm   1480 sec   (1183 perm/sec)   p_kst 3.296229e-02   p_cons 2.146286e-03   p_joint 3.754286e-04

Joint ci ratio: 1.517542e-01	ci left: 3.502168e-04	ci right 4.082661e-04	k: 666	n:1760000
Cons ci ratio: 6.369028e-02	ci left: 2.079311e-03	ci right 2.216654e-03	k: 3779	n:1760000
KS ci ratio: 1.600104e-02	ci left: 3.271223e-02	ci right 3.324044e-02	k: 58037	n:1760000
CLEC12B   1760000 perm   1494 sec   (1178 perm/sec)   p_kst 3.297557e-02   p_cons 2.147159e-03   p_joint 3.784091e-04

Joint ci ratio: 1.514141e-01	ci left: 3.498688e-04	ci right 4.077187e-04	k: 669	n:1770000
Cons ci ratio: 6.350574e-02	ci left: 2.079795e-03	ci right 2.216757e-03	k: 3801	n:1770000
KS ci ratio: 1.595857e-02	ci left: 3.270186e-02	ci right 3.322848e-02	k: 58347	n:1770000
CLEC12B   1770000 perm   1509 sec   (1173 perm/sec)   p_kst 3.296441e-02   p_cons 2.147458e-03   p_joint 3.779661e-04

Joint ci ratio: 1.508522e-01	ci left: 3.506060e-04	ci right 4.083433e-04	k: 674	n:1780000
Cons ci ratio: 6.335600e-02	ci left: 2.078063e-03	ci right 2.214576e-03	k: 3819	n:1780000
KS ci ratio: 1.591181e-02	ci left: 3.271007e-02	ci right 3.323527e-02	k: 58690	n:1780000
CLEC12B   1780000 perm   1524 sec   (1168 perm/sec)   p_kst 3.297191e-02   p_cons 2.145506e-03   p_joint 3.786517e-04

Joint ci ratio: 1.539642e-01	ci left: 3.341384e-04	ci right 3.904038e-04	k: 647	n:1790000
Cons ci ratio: 6.316610e-02	ci left: 2.079099e-03	ci right 2.215257e-03	k: 3842	n:1790000
KS ci ratio: 1.586810e-02	ci left: 3.270762e-02	ci right 3.323132e-02	k: 59014	n:1790000
CLEC12B   1790000 perm   1539 sec   (1163 perm/sec)   p_kst 3.296872e-02   p_cons 2.146369e-03   p_joint 3.614525e-04

Joint ci ratio: 1.704097e-01	ci left: 2.688465e-04	ci right 3.194507e-04	k: 528	n:1800000
Cons ci ratio: 6.305149e-02	ci left: 2.075204e-03	ci right 2.210850e-03	k: 3856	n:1800000
KS ci ratio: 1.582957e-02	ci left: 3.268583e-02	ci right 3.320790e-02	k: 59303	n:1800000
CLEC12B   1800000 perm   1554 sec   (1158 perm/sec)   p_kst 3.294611e-02   p_cons 2.142222e-03   p_joint 2.933333e-04

Joint ci ratio: 1.702489e-01	ci left: 2.678901e-04	ci right 3.182618e-04	k: 529	n:1810000
Cons ci ratio: 6.284807e-02	ci left: 2.077333e-03	ci right 2.212665e-03	k: 3881	n:1810000
KS ci ratio: 1.578585e-02	ci left: 3.268629e-02	ci right 3.320692e-02	k: 59632	n:1810000
CLEC12B   1810000 perm   1569 sec   (1153 perm/sec)   p_kst 3.294586e-02   p_cons 2.144199e-03   p_joint 2.922652e-04

Joint ci ratio: 1.648900e-01	ci left: 2.848429e-04	ci right 3.365491e-04	k: 564	n:1820000
Cons ci ratio: 6.268682e-02	ci left: 2.076736e-03	ci right 2.211669e-03	k: 3901	n:1820000
KS ci ratio: 1.574805e-02	ci left: 3.266431e-02	ci right 3.318333e-02	k: 59920	n:1820000
CLEC12B   1820000 perm   1585 sec   (1148 perm/sec)   p_kst 3.292308e-02   p_cons 2.143407e-03   p_joint 3.098901e-04

Joint ci ratio: 1.561496e-01	ci left: 3.173802e-04	ci right 3.716532e-04	k: 629	n:1830000
Cons ci ratio: 6.251882e-02	ci left: 2.076684e-03	ci right 2.211239e-03	k: 3922	n:1830000
KS ci ratio: 1.570742e-02	ci left: 3.265509e-02	ci right 3.317262e-02	k: 60231	n:1830000
CLEC12B   1830000 perm   1601 sec   (1143 perm/sec)   p_kst 3.291311e-02   p_cons 2.143169e-03   p_joint 3.437158e-04

Joint ci ratio: 1.560259e-01	ci left: 3.161775e-04	ci right 3.701981e-04	k: 630	n:1840000
Cons ci ratio: 6.240769e-02	ci left: 2.072887e-03	ci right 2.206949e-03	k: 3936	n:1840000
KS ci ratio: 1.566390e-02	ci left: 3.265897e-02	ci right 3.317511e-02	k: 60566	n:1840000
CLEC12B   1840000 perm   1617 sec   (1138 perm/sec)   p_kst 3.291630e-02   p_cons 2.139130e-03   p_joint 3.423913e-04

Joint ci ratio: 1.559025e-01	ci left: 3.149879e-04	ci right 3.687586e-04	k: 631	n:1850000
Cons ci ratio: 6.229715e-02	ci left: 2.069132e-03	ci right 2.202705e-03	k: 3950	n:1850000
KS ci ratio: 1.562312e-02	ci left: 3.265312e-02	ci right 3.316781e-02	k: 60883	n:1850000
CLEC12B   1850000 perm   1632 sec   (1133 perm/sec)   p_kst 3.290973e-02   p_cons 2.135135e-03   p_joint 3.410811e-04

Joint ci ratio: 1.417915e-01	ci left: 3.816259e-04	ci right 4.403779e-04	k: 763	n:1860000
Cons ci ratio: 6.217934e-02	ci left: 2.065946e-03	ci right 2.199052e-03	k: 3965	n:1860000
KS ci ratio: 1.558042e-02	ci left: 3.265643e-02	ci right 3.316975e-02	k: 61217	n:1860000
CLEC12B   1860000 perm   1648 sec   (1129 perm/sec)   p_kst 3.291237e-02   p_cons 2.131720e-03   p_joint 4.102151e-04

Joint ci ratio: 1.413297e-01	ci left: 3.821643e-04	ci right 4.407914e-04	k: 768	n:1870000
Cons ci ratio: 6.202317e-02	ci left: 2.065427e-03	ci right 2.198154e-03	k: 3985	n:1870000
KS ci ratio: 1.553337e-02	ci left: 3.267889e-02	ci right 3.319100e-02	k: 61587	n:1870000
CLEC12B   1870000 perm   1664 sec   (1124 perm/sec)   p_kst 3.293422e-02   p_cons 2.131016e-03   p_joint 4.106952e-04

Joint ci ratio: 1.409636e-01	ci left: 3.821840e-04	ci right 4.406495e-04	k: 772	n:1880000
Cons ci ratio: 6.186043e-02	ci left: 2.065438e-03	ci right 2.197805e-03	k: 4006	n:1880000
KS ci ratio: 1.549192e-02	ci left: 3.267992e-02	ci right 3.319067e-02	k: 61917	n:1880000
CLEC12B   1880000 perm   1680 sec   (1119 perm/sec)   p_kst 3.293457e-02   p_cons 2.130851e-03   p_joint 4.106383e-04

Joint ci ratio: 1.406909e-01	ci left: 3.816932e-04	ci right 4.399612e-04	k: 775	n:1890000
Cons ci ratio: 6.166830e-02	ci left: 2.067533e-03	ci right 2.199608e-03	k: 4031	n:1890000
KS ci ratio: 1.544285e-02	ci left: 3.271362e-02	ci right 3.322326e-02	k: 62309	n:1890000
CLEC12B   1890000 perm   1695 sec   (1115 perm/sec)   p_kst 3.296772e-02   p_cons 2.132804e-03   p_joint 4.100529e-04

Joint ci ratio: 1.403297e-01	ci left: 3.817156e-04	ci right 4.398249e-04	k: 779	n:1900000
Cons ci ratio: 6.152355e-02	ci left: 2.066498e-03	ci right 2.198185e-03	k: 4050	n:1900000
KS ci ratio: 1.540377e-02	ci left: 3.270764e-02	ci right 3.321589e-02	k: 62626	n:1900000
CLEC12B   1900000 perm   1711 sec   (1110 perm/sec)   p_kst 3.296105e-02   p_cons 2.131579e-03   p_joint 4.100000e-04

Joint ci ratio: 1.399712e-01	ci left: 3.817379e-04	ci right 4.396898e-04	k: 783	n:1910000
Cons ci ratio: 6.130438e-02	ci left: 2.070628e-03	ci right 2.202093e-03	k: 4079	n:1910000
KS ci ratio: 1.536587e-02	ci left: 3.269808e-02	ci right 3.320491e-02	k: 62936	n:1910000
CLEC12B   1910000 perm   1728 sec   (1105 perm/sec)   p_kst 3.295079e-02   p_cons 2.135602e-03   p_joint 4.099476e-04

Joint ci ratio: 1.392624e-01	ci left: 3.837708e-04	ci right 4.417118e-04	k: 791	n:1920000
Cons ci ratio: 6.114723e-02	ci left: 2.070614e-03	ci right 2.201728e-03	k: 4100	n:1920000
KS ci ratio: 1.533050e-02	ci left: 3.267927e-02	ci right 3.318464e-02	k: 63228	n:1920000
CLEC12B   1920000 perm   1744 sec   (1101 perm/sec)   p_kst 3.293125e-02   p_cons 2.135417e-03   p_joint 4.119792e-04

Joint ci ratio: 1.386509e-01	ci left: 3.852832e-04	ci right 4.431760e-04	k: 798	n:1930000
Cons ci ratio: 6.105811e-02	ci left: 2.066008e-03	ci right 2.196633e-03	k: 4112	n:1930000
KS ci ratio: 1.528754e-02	ci left: 3.269318e-02	ci right 3.319734e-02	k: 63583	n:1930000
CLEC12B   1930000 perm   1760 sec   (1097 perm/sec)   p_kst 3.294456e-02   p_cons 2.130570e-03   p_joint 4.134715e-04

Joint ci ratio: 1.381331e-01	ci left: 3.862829e-04	ci right 4.440914e-04	k: 804	n:1940000
Cons ci ratio: 6.096197e-02	ci left: 2.061957e-03	ci right 2.192114e-03	k: 4125	n:1940000
KS ci ratio: 1.524543e-02	ci left: 3.270490e-02	ci right 3.320784e-02	k: 63934	n:1940000
CLEC12B   1940000 perm   1776 sec   (1092 perm/sec)   p_kst 3.295567e-02   p_cons 2.126289e-03   p_joint 4.144330e-04

Joint ci ratio: 1.375364e-01	ci left: 3.877680e-04	ci right 4.455275e-04	k: 811	n:1950000
Cons ci ratio: 6.079274e-02	ci left: 2.062998e-03	ci right 2.192846e-03	k: 4148	n:1950000
KS ci ratio: 1.520514e-02	ci left: 3.271037e-02	ci right 3.321205e-02	k: 64273	n:1950000
CLEC12B   1950000 perm   1793 sec   (1088 perm/sec)   p_kst 3.296051e-02   p_cons 2.127179e-03   p_joint 4.158974e-04

Joint ci ratio: 1.370309e-01	ci left: 3.887457e-04	ci right 4.464206e-04	k: 817	n:1960000
Cons ci ratio: 6.069785e-02	ci left: 2.059005e-03	ci right 2.188392e-03	k: 4161	n:1960000
KS ci ratio: 1.516674e-02	ci left: 3.270917e-02	ci right 3.320955e-02	k: 64599	n:1960000
CLEC12B   1960000 perm   1809 sec   (1084 perm/sec)   p_kst 3.295867e-02   p_cons 2.122959e-03   p_joint 4.168367e-04

Joint ci ratio: 1.365311e-01	ci left: 3.897138e-04	ci right 4.473044e-04	k: 823	n:1970000
Cons ci ratio: 6.053805e-02	ci left: 2.059551e-03	ci right 2.188620e-03	k: 4183	n:1970000
KS ci ratio: 1.512658e-02	ci left: 3.271659e-02	ci right 3.321575e-02	k: 64942	n:1970000
CLEC12B   1970000 perm   1825 sec   (1079 perm/sec)   p_kst 3.296548e-02   p_cons 2.123350e-03   p_joint 4.177665e-04

Joint ci ratio: 1.359547e-01	ci left: 3.911604e-04	ci right 4.487010e-04	k: 830	n:1980000
Cons ci ratio: 6.036513e-02	ci left: 2.061087e-03	ci right 2.189871e-03	k: 4207	n:1980000
KS ci ratio: 1.509020e-02	ci left: 3.270934e-02	ci right 3.320718e-02	k: 65256	n:1980000
CLEC12B   1980000 perm   1842 sec   (1075 perm/sec)   p_kst 3.295758e-02   p_cons 2.124747e-03   p_joint 4.191919e-04

Joint ci ratio: 1.357100e-01	ci left: 3.906511e-04	ci right 4.480050e-04	k: 833	n:1990000
Cons ci ratio: 6.020793e-02	ci left: 2.061619e-03	ci right 2.190088e-03	k: 4229	n:1990000
KS ci ratio: 1.505587e-02	ci left: 3.269466e-02	ci right 3.319113e-02	k: 65555	n:1990000
CLEC12B   1990000 perm   1858 sec   (1071 perm/sec)   p_kst 3.294221e-02   p_cons 2.125126e-03   p_joint 4.185930e-04

Joint ci ratio: 1.356288e-01	ci left: 3.891809e-04	ci right 4.462819e-04	k: 834	n:2000000
Cons ci ratio: 6.004488e-02	ci left: 2.062638e-03	ci right 2.190811e-03	k: 4252	n:2000000
KS ci ratio: 1.501564e-02	ci left: 3.270602e-02	ci right 3.320133e-02	k: 65906	n:2000000
CLEC12B   2000000 perm   1875 sec   (1067 perm/sec)   p_kst 3.295300e-02   p_cons 2.126000e-03   p_joint 4.170000e-04

Joint ci ratio: 1.352246e-01	ci left: 3.896479e-04	ci right 4.466334e-04	k: 839	n:2010000
Cons ci ratio: 5.993937e-02	ci left: 2.059727e-03	ci right 2.187486e-03	k: 4267	n:2010000
KS ci ratio: 1.497550e-02	ci left: 3.271827e-02	ci right 3.321243e-02	k: 66259	n:2010000
CLEC12B   2010000 perm   1891 sec   (1063 perm/sec)   p_kst 3.296468e-02   p_cons 2.122886e-03   p_joint 4.174129e-04

Joint ci ratio: 1.349838e-01	ci left: 3.891539e-04	ci right 4.459577e-04	k: 842	n:2020000
Cons ci ratio: 5.972969e-02	ci left: 2.064159e-03	ci right 2.191730e-03	k: 4297	n:2020000
KS ci ratio: 1.493487e-02	ci left: 3.273385e-02	ci right 3.322689e-02	k: 66619	n:2020000
CLEC12B   2020000 perm   1908 sec   (1059 perm/sec)   p_kst 3.297970e-02   p_cons 2.127228e-03   p_joint 4.168317e-04

Joint ci ratio: 1.344267e-01	ci left: 3.905690e-04	ci right 4.473252e-04	k: 849	n:2030000
Cons ci ratio: 5.957739e-02	ci left: 2.064667e-03	ci right 2.191933e-03	k: 4319	n:2030000
KS ci ratio: 1.489583e-02	ci left: 3.274388e-02	ci right 3.323577e-02	k: 66968	n:2030000
CLEC12B   2030000 perm   1925 sec   (1055 perm/sec)   p_kst 3.298916e-02   p_cons 2.127586e-03   p_joint 4.182266e-04

Joint ci ratio: 1.339547e-01	ci left: 3.914969e-04	ci right 4.481723e-04	k: 855	n:2040000
Cons ci ratio: 5.948120e-02	ci left: 2.061306e-03	ci right 2.188153e-03	k: 4333	n:2040000
KS ci ratio: 1.486029e-02	ci left: 3.274014e-02	ci right 3.323079e-02	k: 67289	n:2040000
CLEC12B   2040000 perm   1942 sec   (1051 perm/sec)   p_kst 3.298480e-02   p_cons 2.124020e-03   p_joint 4.191176e-04

Joint ci ratio: 1.334876e-01	ci left: 3.924161e-04	ci right 4.490108e-04	k: 861	n:2050000
Cons ci ratio: 5.933761e-02	ci left: 2.061343e-03	ci right 2.187875e-03	k: 4354	n:2050000
KS ci ratio: 1.482398e-02	ci left: 3.274081e-02	ci right 3.323026e-02	k: 67619	n:2050000
CLEC12B   2050000 perm   1959 sec   (1046 perm/sec)   p_kst 3.298488e-02   p_cons 2.123902e-03   p_joint 4.200000e-04

Joint ci ratio: 1.329488e-01	ci left: 3.937960e-04	ci right 4.503423e-04	k: 868	n:2060000
Cons ci ratio: 5.921541e-02	ci left: 2.059945e-03	ci right 2.186122e-03	k: 4372	n:2060000
KS ci ratio: 1.478490e-02	ci left: 3.275454e-02	ci right 3.324289e-02	k: 67976	n:2060000
CLEC12B   2060000 perm   1976 sec   (1042 perm/sec)   p_kst 3.299806e-02   p_cons 2.122330e-03   p_joint 4.213592e-04

Joint ci ratio: 1.387397e-01	ci left: 3.587588e-04	ci right 4.127034e-04	k: 797	n:2070000
Cons ci ratio: 5.906701e-02	ci left: 2.060464e-03	ci right 2.186346e-03	k: 4394	n:2070000
KS ci ratio: 1.475060e-02	ci left: 3.274888e-02	ci right 3.323600e-02	k: 68293	n:2070000
CLEC12B   2070000 perm   1993 sec   (1038 perm/sec)   p_kst 3.299179e-02   p_cons 2.122705e-03   p_joint 3.850242e-04

Joint ci ratio: 1.385662e-01	ci left: 3.579621e-04	ci right 4.117141e-04	k: 799	n:2080000
Cons ci ratio: 5.889300e-02	ci left: 2.062874e-03	ci right 2.188519e-03	k: 4420	n:2080000
KS ci ratio: 1.471564e-02	ci left: 3.274711e-02	ci right 3.323304e-02	k: 68618	n:2080000
CLEC12B   2080000 perm   2011 sec   (1034 perm/sec)   p_kst 3.298942e-02   p_cons 2.125000e-03   p_joint 3.841346e-04

Joint ci ratio: 1.531430e-01	ci left: 2.893961e-04	ci right 3.378435e-04	k: 654	n:2090000
Cons ci ratio: 5.873375e-02	ci left: 2.064318e-03	ci right 2.189699e-03	k: 4444	n:2090000
KS ci ratio: 1.467951e-02	ci left: 3.275155e-02	ci right 3.323635e-02	k: 68956	n:2090000
CLEC12B   2090000 perm   2028 sec   (1031 perm/sec)   p_kst 3.299330e-02   p_cons 2.126316e-03   p_joint 3.129187e-04

Joint ci ratio: 1.526775e-01	ci left: 2.898499e-04	ci right 3.382123e-04	k: 658	n:2100000
Cons ci ratio: 5.856923e-02	ci left: 2.066218e-03	ci right 2.191352e-03	k: 4469	n:2100000
KS ci ratio: 1.464494e-02	ci left: 3.275026e-02	ci right 3.323389e-02	k: 69282	n:2100000
CLEC12B   2100000 perm   2045 sec   (1027 perm/sec)   p_kst 3.299143e-02   p_cons 2.128095e-03   p_joint 3.133333e-04

Joint ci ratio: 1.525619e-01	ci left: 2.889320e-04	ci right 3.371014e-04	k: 659	n:2110000
Cons ci ratio: 5.843214e-02	ci left: 2.066233e-03	ci right 2.191064e-03	k: 4490	n:2110000
KS ci ratio: 1.460997e-02	ci left: 3.275181e-02	ci right 3.323430e-02	k: 69614	n:2110000
CLEC12B   2110000 perm   2063 sec   (1023 perm/sec)   p_kst 3.299242e-02   p_cons 2.127962e-03   p_joint 3.123223e-04

Joint ci ratio: 1.516454e-01	ci left: 2.911991e-04	ci right 3.394284e-04	k: 667	n:2120000
Cons ci ratio: 5.821847e-02	ci left: 2.071826e-03	ci right 2.196522e-03	k: 4523	n:2120000
KS ci ratio: 1.457838e-02	ci left: 3.273973e-02	ci right 3.322098e-02	k: 69917	n:2120000
CLEC12B   2120000 perm   2080 sec   (1019 perm/sec)   p_kst 3.297972e-02   p_cons 2.133491e-03   p_joint 3.146226e-04

Joint ci ratio: 1.513060e-01	ci left: 2.911870e-04	ci right 3.392966e-04	k: 670	n:2130000
Cons ci ratio: 5.803266e-02	ci left: 2.075516e-03	ci right 2.200022e-03	k: 4552	n:2130000
KS ci ratio: 1.454474e-02	ci left: 3.273758e-02	ci right 3.321768e-02	k: 70241	n:2130000
CLEC12B   2130000 perm   2098 sec   (1015 perm/sec)   p_kst 3.297700e-02   p_cons 2.137089e-03   p_joint 3.145540e-04

Joint ci ratio: 1.510811e-01	ci left: 2.907256e-04	ci right 3.386810e-04	k: 672	n:2140000
Cons ci ratio: 5.786127e-02	ci left: 2.078251e-03	ci right 2.202541e-03	k: 4579	n:2140000
KS ci ratio: 1.450994e-02	ci left: 3.274150e-02	ci right 3.322051e-02	k: 70578	n:2140000
CLEC12B   2140000 perm   2116 sec   (1011 perm/sec)   p_kst 3.298037e-02   p_cons 2.139720e-03   p_joint 3.140187e-04

Joint ci ratio: 1.508571e-01	ci left: 2.902684e-04	ci right 3.380711e-04	k: 674	n:2150000
Cons ci ratio: 5.769140e-02	ci left: 2.080962e-03	ci right 2.205036e-03	k: 4606	n:2150000
KS ci ratio: 1.447403e-02	ci left: 3.275142e-02	ci right 3.322937e-02	k: 70928	n:2150000
CLEC12B   2150000 perm   2133 sec   (1008 perm/sec)   p_kst 3.298977e-02   p_cons 2.142326e-03   p_joint 3.134884e-04

Joint ci ratio: 1.508573e-01	ci left: 2.889246e-04	ci right 3.365060e-04	k: 674	n:2160000
Cons ci ratio: 5.754790e-02	ci left: 2.081823e-03	ci right 2.205629e-03	k: 4629	n:2160000
KS ci ratio: 1.444121e-02	ci left: 3.274879e-02	ci right 3.322561e-02	k: 71251	n:2160000
CLEC12B   2160000 perm   2152 sec   (1004 perm/sec)   p_kst 3.298657e-02   p_cons 2.143056e-03   p_joint 3.120370e-04

Joint ci ratio: 1.498613e-01	ci left: 2.915846e-04	ci right 3.392586e-04	k: 683	n:2170000
Cons ci ratio: 5.740548e-02	ci left: 2.082676e-03	ci right 2.206216e-03	k: 4652	n:2170000
KS ci ratio: 1.440872e-02	ci left: 3.274572e-02	ci right 3.322142e-02	k: 71573	n:2170000
CLEC12B   2170000 perm   2170 sec   (1000 perm/sec)   p_kst 3.298295e-02   p_cons 2.143779e-03   p_joint 3.147465e-04

Joint ci ratio: 1.496427e-01	ci left: 2.911301e-04	ci right 3.386542e-04	k: 685	n:2180000
Cons ci ratio: 5.727638e-02	ci left: 2.082617e-03	ci right 2.205867e-03	k: 4673	n:2180000
KS ci ratio: 1.437386e-02	ci left: 3.275412e-02	ci right 3.322878e-02	k: 71920	n:2180000
CLEC12B   2180000 perm   2188 sec   (996 perm/sec)   p_kst 3.299083e-02   p_cons 2.143578e-03   p_joint 3.142202e-04

Joint ci ratio: 1.494251e-01	ci left: 2.906798e-04	ci right 3.380552e-04	k: 687	n:2190000
Cons ci ratio: 5.714815e-02	ci left: 2.082559e-03	ci right 2.205521e-03	k: 4694	n:2190000
KS ci ratio: 1.434243e-02	ci left: 3.274833e-02	ci right 3.322186e-02	k: 72236	n:2190000
CLEC12B   2190000 perm   2206 sec   (993 perm/sec)   p_kst 3.298447e-02   p_cons 2.143379e-03   p_joint 3.136986e-04

Joint ci ratio: 1.493167e-01	ci left: 2.897961e-04	ci right 3.369901e-04	k: 688	n:2200000
Cons ci ratio: 5.701471e-02	ci left: 2.082950e-03	ci right 2.205639e-03	k: 4716	n:2200000
KS ci ratio: 1.430988e-02	ci left: 3.274848e-02	ci right 3.322093e-02	k: 72565	n:2200000
CLEC12B   2200000 perm   2224 sec   (989 perm/sec)   p_kst 3.298409e-02   p_cons 2.143636e-03   p_joint 3.127273e-04

Joint ci ratio: 1.493168e-01	ci left: 2.884848e-04	ci right 3.354653e-04	k: 688	n:2210000
Cons ci ratio: 5.686418e-02	ci left: 2.084677e-03	ci right 2.207132e-03	k: 4741	n:2210000
KS ci ratio: 1.428161e-02	ci left: 3.273060e-02	ci right 3.320185e-02	k: 72854	n:2210000
CLEC12B   2210000 perm   2242 sec   (986 perm/sec)   p_kst 3.296561e-02   p_cons 2.145249e-03   p_joint 3.113122e-04

Joint ci ratio: 1.488852e-01	ci left: 2.889199e-04	ci right 3.358231e-04	k: 692	n:2220000
Cons ci ratio: 5.671483e-02	ci left: 2.086388e-03	ci right 2.208611e-03	k: 4766	n:2220000
KS ci ratio: 1.424615e-02	ci left: 3.274565e-02	ci right 3.321593e-02	k: 73216	n:2220000
CLEC12B   2220000 perm   2260 sec   (982 perm/sec)   p_kst 3.298018e-02   p_cons 2.146847e-03   p_joint 3.117117e-04

Joint ci ratio: 1.486709e-01	ci left: 2.884878e-04	ci right 3.352474e-04	k: 694	n:2230000
Cons ci ratio: 5.659625e-02	ci left: 2.085873e-03	ci right 2.207802e-03	k: 4786	n:2230000
KS ci ratio: 1.421416e-02	ci left: 3.274626e-02	ci right 3.321549e-02	k: 73546	n:2230000
CLEC12B   2230000 perm   2278 sec   (979 perm/sec)   p_kst 3.298027e-02   p_cons 2.146188e-03   p_joint 3.112108e-04

Joint ci ratio: 1.483510e-01	ci left: 2.884894e-04	ci right 3.351398e-04	k: 697	n:2240000
Cons ci ratio: 5.644899e-02	ci left: 2.087564e-03	ci right 2.209264e-03	k: 4811	n:2240000
KS ci ratio: 1.418327e-02	ci left: 3.274287e-02	ci right 3.321102e-02	k: 73867	n:2240000
CLEC12B   2240000 perm   2296 sec   (975 perm/sec)   p_kst 3.297634e-02   p_cons 2.147768e-03   p_joint 3.111607e-04

Joint ci ratio: 1.482450e-01	ci left: 2.876352e-04	ci right 3.341112e-04	k: 698	n:2250000
Cons ci ratio: 5.633206e-02	ci left: 2.087050e-03	ci right 2.208460e-03	k: 4831	n:2250000
KS ci ratio: 1.415159e-02	ci left: 3.274393e-02	ci right 3.321105e-02	k: 74198	n:2250000
CLEC12B   2250000 perm   2315 sec   (972 perm/sec)   p_kst 3.297689e-02   p_cons 2.147111e-03   p_joint 3.102222e-04

Joint ci ratio: 1.481391e-01	ci left: 2.867885e-04	ci right 3.330918e-04	k: 699	n:2260000
Cons ci ratio: 5.625655e-02	ci left: 2.083486e-03	ci right 2.204521e-03	k: 4844	n:2260000
KS ci ratio: 1.412130e-02	ci left: 3.273970e-02	ci right 3.320575e-02	k: 74517	n:2260000
CLEC12B   2260000 perm   2334 sec   (968 perm/sec)   p_kst 3.297212e-02   p_cons 2.143363e-03   p_joint 3.092920e-04

Joint ci ratio: 1.479280e-01	ci left: 2.863735e-04	ci right 3.325381e-04	k: 701	n:2270000
Cons ci ratio: 5.616974e-02	ci left: 2.080823e-03	ci right 2.201510e-03	k: 4859	n:2270000
KS ci ratio: 1.409218e-02	ci left: 3.273111e-02	ci right 3.319607e-02	k: 74826	n:2270000
CLEC12B   2270000 perm   2353 sec   (965 perm/sec)   p_kst 3.296300e-02   p_cons 2.140529e-03   p_joint 3.088106e-04

Joint ci ratio: 1.479281e-01	ci left: 2.851175e-04	ci right 3.310796e-04	k: 701	n:2280000
Cons ci ratio: 5.605454e-02	ci left: 2.080345e-03	ci right 2.200750e-03	k: 4879	n:2280000
KS ci ratio: 1.405657e-02	ci left: 3.275276e-02	ci right 3.321684e-02	k: 75204	n:2280000
CLEC12B   2280000 perm   2372 sec   (961 perm/sec)   p_kst 3.298421e-02   p_cons 2.139912e-03   p_joint 3.074561e-04

Joint ci ratio: 1.477178e-01	ci left: 2.847135e-04	ci right 3.305395e-04	k: 703	n:2290000
Cons ci ratio: 5.596294e-02	ci left: 2.078150e-03	ci right 2.198224e-03	k: 4895	n:2290000
KS ci ratio: 1.402458e-02	ci left: 3.275900e-02	ci right 3.322210e-02	k: 75547	n:2290000
CLEC12B   2290000 perm   2391 sec   (958 perm/sec)   p_kst 3.298996e-02   p_cons 2.137555e-03   p_joint 3.069869e-04

Joint ci ratio: 1.471960e-01	ci left: 2.855693e-04	ci right 3.313564e-04	k: 708	n:2300000
Cons ci ratio: 5.579784e-02	ci left: 2.081547e-03	ci right 2.201451e-03	k: 4924	n:2300000
KS ci ratio: 1.399367e-02	ci left: 3.276127e-02	ci right 3.322338e-02	k: 75881	n:2300000
CLEC12B   2300000 perm   2411 sec   (954 perm/sec)   p_kst 3.299174e-02   p_cons 2.140870e-03   p_joint 3.078261e-04

Joint ci ratio: 1.469888e-01	ci left: 2.851670e-04	ci right 3.308196e-04	k: 710	n:2310000
Cons ci ratio: 5.571314e-02	ci left: 2.078939e-03	ci right 2.198505e-03	k: 4939	n:2310000
KS ci ratio: 1.396050e-02	ci left: 3.277475e-02	ci right 3.323594e-02	k: 76241	n:2310000
CLEC12B   2310000 perm   2430 sec   (951 perm/sec)   p_kst 3.300476e-02   p_cons 2.138095e-03   p_joint 3.073593e-04

Joint ci ratio: 1.463724e-01	ci left: 2.864292e-04	ci right 3.320747e-04	k: 716	n:2320000
Cons ci ratio: 5.557826e-02	ci left: 2.080179e-03	ci right 2.199518e-03	k: 4963	n:2320000
KS ci ratio: 1.392888e-02	ci left: 3.278210e-02	ci right 3.324234e-02	k: 76587	n:2320000
CLEC12B   2320000 perm   2450 sec   (947 perm/sec)   p_kst 3.301164e-02   p_cons 2.139224e-03   p_joint 3.086207e-04

Joint ci ratio: 1.459658e-01	ci left: 2.868538e-04	ci right 3.324289e-04	k: 720	n:2330000
Cons ci ratio: 5.547223e-02	ci left: 2.079292e-03	ci right 2.198345e-03	k: 4982	n:2330000
KS ci ratio: 1.389486e-02	ci left: 3.280136e-02	ci right 3.326074e-02	k: 76961	n:2330000
CLEC12B   2330000 perm   2469 sec   (944 perm/sec)   p_kst 3.303047e-02   p_cons 2.138197e-03   p_joint 3.090129e-04

Joint ci ratio: 1.458648e-01	ci left: 2.860397e-04	ci right 3.314513e-04	k: 721	n:2340000
Cons ci ratio: 5.537235e-02	ci left: 2.077992e-03	ci right 2.196750e-03	k: 5000	n:2340000
KS ci ratio: 1.386405e-02	ci left: 3.280683e-02	ci right 3.326526e-02	k: 77303	n:2340000
CLEC12B   2340000 perm   2489 sec   (940 perm/sec)   p_kst 3.303547e-02   p_cons 2.136752e-03   p_joint 3.081197e-04

Joint ci ratio: 1.456632e-01	ci left: 2.856425e-04	ci right 3.309229e-04	k: 723	n:2350000
Cons ci ratio: 5.523442e-02	ci left: 2.079641e-03	ci right 2.198187e-03	k: 5025	n:2350000
KS ci ratio: 1.383437e-02	ci left: 3.280802e-02	ci right 3.326547e-02	k: 77635	n:2350000
CLEC12B   2350000 perm   2508 sec   (937 perm/sec)   p_kst 3.303617e-02   p_cons 2.138298e-03   p_joint 3.076596e-04

Joint ci ratio: 1.452624e-01	ci left: 2.860654e-04	ci right 3.312773e-04	k: 727	n:2360000
Cons ci ratio: 5.515226e-02	ci left: 2.077097e-03	ci right 2.195317e-03	k: 5040	n:2360000
KS ci ratio: 1.380186e-02	ci left: 3.282313e-02	ci right 3.327971e-02	k: 78000	n:2360000
CLEC12B   2360000 perm   2528 sec   (933 perm/sec)   p_kst 3.305085e-02   p_cons 2.135593e-03   p_joint 3.080508e-04

Joint ci ratio: 1.493184e-01	ci left: 2.690088e-04	ci right 3.128181e-04	k: 688	n:2370000
Cons ci ratio: 5.502141e-02	ci left: 2.078320e-03	ci right 2.196320e-03	k: 5064	n:2370000
KS ci ratio: 1.377503e-02	ci left: 3.281288e-02	ci right 3.326843e-02	k: 78305	n:2370000
CLEC12B   2370000 perm   2548 sec   (930 perm/sec)   p_kst 3.304008e-02   p_cons 2.136709e-03   p_joint 2.902954e-04

Joint ci ratio: 1.489943e-01	ci left: 2.690920e-04	ci right 3.128112e-04	k: 691	n:2380000
Cons ci ratio: 5.488608e-02	ci left: 2.079947e-03	ci right 2.197740e-03	k: 5089	n:2380000
KS ci ratio: 1.374700e-02	ci left: 3.280900e-02	ci right 3.326356e-02	k: 78625	n:2380000
CLEC12B   2380000 perm   2568 sec   (927 perm/sec)   p_kst 3.303571e-02   p_cons 2.138235e-03   p_joint 2.903361e-04

Joint ci ratio: 1.487795e-01	ci left: 2.687717e-04	ci right 3.123704e-04	k: 693	n:2390000
Cons ci ratio: 5.480008e-02	ci left: 2.077847e-03	ci right 2.195331e-03	k: 5105	n:2390000
KS ci ratio: 1.371780e-02	ci left: 3.281141e-02	ci right 3.326503e-02	k: 78960	n:2390000
CLEC12B   2390000 perm   2588 sec   (924 perm/sec)   p_kst 3.303766e-02   p_cons 2.135983e-03   p_joint 2.899582e-04

Joint ci ratio: 1.487796e-01	ci left: 2.676518e-04	ci right 3.110689e-04	k: 693	n:2400000
Cons ci ratio: 5.472519e-02	ci left: 2.074943e-03	ci right 2.192097e-03	k: 5119	n:2400000
KS ci ratio: 1.368735e-02	ci left: 3.282045e-02	ci right 3.327318e-02	k: 79311	n:2400000
CLEC12B   2400000 perm   2608 sec   (920 perm/sec)   p_kst 3.304625e-02   p_cons 2.132917e-03   p_joint 2.887500e-04

Joint ci ratio: 1.482465e-01	ci left: 2.685388e-04	ci right 3.119298e-04	k: 698	n:2410000
Cons ci ratio: 5.461863e-02	ci left: 2.074519e-03	ci right 2.191413e-03	k: 5139	n:2410000
KS ci ratio: 1.366065e-02	ci left: 3.281287e-02	ci right 3.326460e-02	k: 79622	n:2410000
CLEC12B   2410000 perm   2628 sec   (917 perm/sec)   p_kst 3.303817e-02   p_cons 2.132365e-03   p_joint 2.896266e-04

Joint ci ratio: 1.476142e-01	ci left: 2.698168e-04	ci right 3.132119e-04	k: 704	n:2420000
Cons ci ratio: 5.449153e-02	ci left: 2.075728e-03	ci right 2.192410e-03	k: 5163	n:2420000
KS ci ratio: 1.362961e-02	ci left: 3.282636e-02	ci right 3.327724e-02	k: 79984	n:2420000
CLEC12B   2420000 perm   2649 sec   (914 perm/sec)   p_kst 3.305124e-02   p_cons 2.133471e-03   p_joint 2.909091e-04

Joint ci ratio: 1.473011e-01	ci left: 2.698954e-04	ci right 3.132030e-04	k: 707	n:2430000
Cons ci ratio: 5.439159e-02	ci left: 2.074899e-03	ci right 2.191313e-03	k: 5182	n:2430000
KS ci ratio: 1.360044e-02	ci left: 3.283194e-02	ci right 3.328193e-02	k: 80327	n:2430000
CLEC12B   2430000 perm   2669 sec   (910 perm/sec)   p_kst 3.305638e-02   p_cons 2.132510e-03   p_joint 2.909465e-04

Joint ci ratio: 1.471973e-01	ci left: 2.691840e-04	ci right 3.123443e-04	k: 708	n:2440000
Cons ci ratio: 5.426606e-02	ci left: 2.076097e-03	ci right 2.192302e-03	k: 5206	n:2440000
KS ci ratio: 1.357242e-02	ci left: 3.283299e-02	ci right 3.328206e-02	k: 80659	n:2440000
CLEC12B   2440000 perm   2689 sec   (907 perm/sec)   p_kst 3.305697e-02   p_cons 2.133607e-03   p_joint 2.901639e-04

Joint ci ratio: 1.469901e-01	ci left: 2.688716e-04	ci right 3.119158e-04	k: 710	n:2450000
Cons ci ratio: 5.416216e-02	ci left: 2.075676e-03	ci right 2.191628e-03	k: 5226	n:2450000
KS ci ratio: 1.354630e-02	ci left: 3.282589e-02	ci right 3.327399e-02	k: 80971	n:2450000
CLEC12B   2450000 perm   2710 sec   (904 perm/sec)   p_kst 3.304939e-02   p_cons 2.133061e-03   p_joint 2.897959e-04

Joint ci ratio: 1.466810e-01	ci left: 2.689533e-04	ci right 3.119122e-04	k: 713	n:2460000
Cons ci ratio: 5.406918e-02	ci left: 2.074457e-03	ci right 2.190135e-03	k: 5244	n:2460000
KS ci ratio: 1.352076e-02	ci left: 3.281682e-02	ci right 3.326395e-02	k: 81278	n:2460000
CLEC12B   2460000 perm   2730 sec   (901 perm/sec)   p_kst 3.303984e-02   p_cons 2.131707e-03   p_joint 2.898374e-04

Joint ci ratio: 1.466811e-01	ci left: 2.678644e-04	ci right 3.106494e-04	k: 713	n:2470000
Cons ci ratio: 5.397153e-02	ci left: 2.073646e-03	ci right 2.189064e-03	k: 5263	n:2470000
KS ci ratio: 1.349374e-02	ci left: 3.281550e-02	ci right 3.326171e-02	k: 81604	n:2470000
CLEC12B   2470000 perm   2750 sec   (898 perm/sec)   p_kst 3.303806e-02   p_cons 2.130769e-03   p_joint 2.886640e-04

Joint ci ratio: 1.466812e-01	ci left: 2.667843e-04	ci right 3.093968e-04	k: 713	n:2480000
Cons ci ratio: 5.384379e-02	ci left: 2.075230e-03	ci right 2.190454e-03	k: 5288	n:2480000
KS ci ratio: 1.346399e-02	ci left: 3.282785e-02	ci right 3.327324e-02	k: 81964	n:2480000
CLEC12B   2480000 perm   2771 sec   (895 perm/sec)   p_kst 3.305000e-02   p_cons 2.132258e-03   p_joint 2.875000e-04

Joint ci ratio: 1.454636e-01	ci left: 2.703561e-04	ci right 3.131495e-04	k: 725	n:2490000
Cons ci ratio: 5.369164e-02	ci left: 2.078782e-03	ci right 2.193867e-03	k: 5318	n:2490000
KS ci ratio: 1.343511e-02	ci left: 3.283691e-02	ci right 3.328145e-02	k: 82316	n:2490000
CLEC12B   2490000 perm   2791 sec   (892 perm/sec)   p_kst 3.305863e-02   p_cons 2.135743e-03   p_joint 2.911647e-04

Joint ci ratio: 1.451640e-01	ci left: 2.704310e-04	ci right 3.131405e-04	k: 728	n:2500000
Cons ci ratio: 5.359602e-02	ci left: 2.077965e-03	ci right 2.192793e-03	k: 5337	n:2500000
KS ci ratio: 1.341036e-02	ci left: 3.282715e-02	ci right 3.327073e-02	k: 82621	n:2500000
CLEC12B   2500000 perm   2812 sec   (889 perm/sec)   p_kst 3.304840e-02   p_cons 2.134800e-03   p_joint 2.912000e-04

Joint ci ratio: 1.448662e-01	ci left: 2.705055e-04	ci right 3.131314e-04	k: 731	n:2510000
Cons ci ratio: 5.349591e-02	ci left: 2.077547e-03	ci right 2.192132e-03	k: 5357	n:2510000
KS ci ratio: 1.338349e-02	ci left: 3.282819e-02	ci right 3.327090e-02	k: 82953	n:2510000
CLEC12B   2510000 perm   2832 sec   (886 perm/sec)   p_kst 3.304900e-02   p_cons 2.134263e-03   p_joint 2.912351e-04

Joint ci ratio: 1.448663e-01	ci left: 2.694320e-04	ci right 3.118889e-04	k: 731	n:2520000
Cons ci ratio: 5.338641e-02	ci left: 2.077917e-03	ci right 2.192280e-03	k: 5379	n:2520000
KS ci ratio: 1.335488e-02	ci left: 3.283832e-02	ci right 3.328021e-02	k: 83308	n:2520000
CLEC12B   2520000 perm   2853 sec   (883 perm/sec)   p_kst 3.305873e-02   p_cons 2.134524e-03   p_joint 2.900794e-04

Joint ci ratio: 1.444721e-01	ci left: 2.698909e-04	ci right 3.122943e-04	k: 735	n:2530000
Cons ci ratio: 5.328253e-02	ci left: 2.077893e-03	ci right 2.192026e-03	k: 5400	n:2530000
KS ci ratio: 1.332670e-02	ci left: 3.284719e-02	ci right 3.328826e-02	k: 83660	n:2530000
CLEC12B   2530000 perm   2873 sec   (881 perm/sec)   p_kst 3.306719e-02   p_cons 2.134387e-03   p_joint 2.905138e-04

Joint ci ratio: 1.442762e-01	ci left: 2.695873e-04	ci right 3.118806e-04	k: 737	n:2540000
Cons ci ratio: 5.318416e-02	ci left: 2.077482e-03	ci right 2.191375e-03	k: 5420	n:2540000
KS ci ratio: 1.330082e-02	ci left: 3.284579e-02	ci right 3.328598e-02	k: 83986	n:2540000
CLEC12B   2540000 perm   2894 sec   (878 perm/sec)   p_kst 3.306535e-02   p_cons 2.133858e-03   p_joint 2.901575e-04

Joint ci ratio: 1.439838e-01	ci left: 2.696641e-04	ci right 3.118764e-04	k: 740	n:2550000
Cons ci ratio: 5.309123e-02	ci left: 2.076687e-03	ci right 2.190331e-03	k: 5439	n:2550000
KS ci ratio: 1.327404e-02	ci left: 3.284949e-02	ci right 3.328883e-02	k: 84325	n:2550000
CLEC12B   2550000 perm   2915 sec   (875 perm/sec)   p_kst 3.306863e-02   p_cons 2.132941e-03   p_joint 2.901961e-04

Joint ci ratio: 1.439839e-01	ci left: 2.686107e-04	ci right 3.106582e-04	k: 740	n:2560000
Cons ci ratio: 5.301825e-02	ci left: 2.074356e-03	ci right 2.187712e-03	k: 5454	n:2560000
KS ci ratio: 1.324790e-02	ci left: 3.285082e-02	ci right 3.328930e-02	k: 84658	n:2560000
CLEC12B   2560000 perm   2936 sec   (872 perm/sec)   p_kst 3.306953e-02   p_cons 2.130469e-03   p_joint 2.890625e-04

Joint ci ratio: 1.285878e-01	ci left: 3.382319e-04	ci right 3.850849e-04	k: 928	n:2570000
Cons ci ratio: 5.290198e-02	ci left: 2.075500e-03	ci right 2.188662e-03	k: 5478	n:2570000
KS ci ratio: 1.322248e-02	ci left: 3.284942e-02	ci right 3.328704e-02	k: 84984	n:2570000
CLEC12B   2570000 perm   2958 sec   (869 perm/sec)   p_kst 3.306770e-02   p_cons 2.131518e-03   p_joint 3.610895e-04

Joint ci ratio: 1.281745e-01	ci left: 3.391718e-04	ci right 3.859926e-04	k: 934	n:2580000
Cons ci ratio: 5.278166e-02	ci left: 2.077017e-03	ci right 2.189997e-03	k: 5503	n:2580000
KS ci ratio: 1.319808e-02	ci left: 3.284379e-02	ci right 3.328052e-02	k: 85299	n:2580000
CLEC12B   2580000 perm   2979 sec   (866 perm/sec)   p_kst 3.306163e-02   p_cons 2.132946e-03   p_joint 3.620155e-04

Joint ci ratio: 1.276972e-01	ci left: 3.404785e-04	ci right 3.872914e-04	k: 941	n:2590000
Cons ci ratio: 5.266693e-02	ci left: 2.078142e-03	ci right 2.190929e-03	k: 5527	n:2590000
KS ci ratio: 1.317143e-02	ci left: 3.284974e-02	ci right 3.328567e-02	k: 85644	n:2590000
CLEC12B   2590000 perm   3000 sec   (863 perm/sec)   p_kst 3.306718e-02   p_cons 2.133977e-03   p_joint 3.633205e-04

Joint ci ratio: 1.275619e-01	ci left: 3.399136e-04	ci right 3.865956e-04	k: 943	n:2600000
Cons ci ratio: 5.258143e-02	ci left: 2.076981e-03	ci right 2.189517e-03	k: 5545	n:2600000
KS ci ratio: 1.314669e-02	ci left: 3.284722e-02	ci right 3.328228e-02	k: 85967	n:2600000
CLEC12B   2600000 perm   3021 sec   (861 perm/sec)   p_kst 3.306423e-02   p_cons 2.132692e-03   p_joint 3.626923e-04

Joint ci ratio: 1.420791e-01	ci left: 2.708536e-04	ci right 3.126437e-04	k: 760	n:2610000
Cons ci ratio: 5.248689e-02	ci left: 2.076585e-03	ci right 2.188892e-03	k: 5565	n:2610000
KS ci ratio: 1.311972e-02	ci left: 3.285617e-02	ci right 3.329046e-02	k: 86320	n:2610000
CLEC12B   2610000 perm   3042 sec   (858 perm/sec)   p_kst 3.307280e-02   p_cons 2.132184e-03   p_joint 2.911877e-04

Joint ci ratio: 1.417999e-01	ci left: 2.709242e-04	ci right 3.126361e-04	k: 763	n:2620000
Cons ci ratio: 5.240696e-02	ci left: 2.075063e-03	ci right 2.187111e-03	k: 5582	n:2620000
KS ci ratio: 1.309237e-02	ci left: 3.286772e-02	ci right 3.330125e-02	k: 86680	n:2620000
CLEC12B   2620000 perm   3064 sec   (855 perm/sec)   p_kst 3.308397e-02   p_cons 2.130534e-03   p_joint 2.912214e-04

Joint ci ratio: 1.413381e-01	ci left: 2.717279e-04	ci right 3.134158e-04	k: 768	n:2630000
Cons ci ratio: 5.231335e-02	ci left: 2.074678e-03	ci right 2.186499e-03	k: 5602	n:2630000
KS ci ratio: 1.306519e-02	ci left: 3.287919e-02	ci right 3.331196e-02	k: 87040	n:2630000
CLEC12B   2630000 perm   3085 sec   (852 perm/sec)   p_kst 3.309506e-02   p_cons 2.130038e-03   p_joint 2.920152e-04

Joint ci ratio: 1.241865e-01	ci left: 3.538404e-04	ci right 4.010546e-04	k: 995	n:2640000
Cons ci ratio: 6.593380e-02	ci left: 1.293027e-03	ci right 1.381557e-03	k: 3529	n:2640000
KS ci ratio: 1.303826e-02	ci left: 3.289019e-02	ci right 3.332220e-02	k: 87399	n:2640000
CLEC12B   2640000 perm   3107 sec   (850 perm/sec)   p_kst 3.310568e-02   p_cons 1.336742e-03   p_joint 3.768939e-04

Joint ci ratio: 1.239999e-01	ci left: 3.536021e-04	ci right 4.007084e-04	k: 998	n:2650000
Cons ci ratio: 6.584996e-02	ci left: 1.291488e-03	ci right 1.379796e-03	k: 3538	n:2650000
KS ci ratio: 1.301265e-02	ci left: 3.289546e-02	ci right 3.332669e-02	k: 87743	n:2650000
CLEC12B   2650000 perm   3129 sec   (847 perm/sec)   p_kst 3.311057e-02   p_cons 1.335094e-03   p_joint 3.766038e-04

Joint ci ratio: 1.235677e-01	ci left: 3.548229e-04	ci right 4.019150e-04	k: 1005	n:2660000
Cons ci ratio: 6.567383e-02	ci left: 1.293658e-03	ci right 1.381869e-03	k: 3557	n:2660000
KS ci ratio: 1.298703e-02	ci left: 3.290145e-02	ci right 3.333190e-02	k: 88089	n:2660000
CLEC12B   2660000 perm   3151 sec   (844 perm/sec)   p_kst 3.311617e-02   p_cons 1.337218e-03   p_joint 3.778195e-04

Joint ci ratio: 1.230185e-01	ci left: 3.567608e-04	ci right 4.038844e-04	k: 1014	n:2670000
Cons ci ratio: 6.556338e-02	ci left: 1.293234e-03	ci right 1.381262e-03	k: 3569	n:2670000
KS ci ratio: 1.296201e-02	ci left: 3.290515e-02	ci right 3.333481e-02	k: 88429	n:2670000
CLEC12B   2670000 perm   3173 sec   (842 perm/sec)   p_kst 3.311948e-02   p_cons 1.336704e-03   p_joint 3.797753e-04

Joint ci ratio: 1.229580e-01	ci left: 3.557913e-04	ci right 4.027620e-04	k: 1015	n:2680000
Cons ci ratio: 6.539866e-02	ci left: 1.295015e-03	ci right 1.382934e-03	k: 3587	n:2680000
KS ci ratio: 1.293903e-02	ci left: 3.289953e-02	ci right 3.332835e-02	k: 88744	n:2680000
CLEC12B   2680000 perm   3194 sec   (839 perm/sec)   p_kst 3.311343e-02   p_cons 1.338433e-03   p_joint 3.787313e-04

Joint ci ratio: 1.228372e-01	ci left: 3.551893e-04	ci right 4.020311e-04	k: 1017	n:2690000
Cons ci ratio: 6.528959e-02	ci left: 1.294589e-03	ci right 1.382327e-03	k: 3599	n:2690000
KS ci ratio: 1.291677e-02	ci left: 3.289098e-02	ci right 3.331895e-02	k: 89051	n:2690000
CLEC12B   2690000 perm   3216 sec   (836 perm/sec)   p_kst 3.310446e-02   p_cons 1.337918e-03   p_joint 3.780669e-04

Joint ci ratio: 1.226566e-01	ci left: 3.549507e-04	ci right 4.016873e-04	k: 1020	n:2700000
Cons ci ratio: 6.515397e-02	ci left: 1.295259e-03	ci right 1.382853e-03	k: 3614	n:2700000
KS ci ratio: 1.289313e-02	ci left: 3.288988e-02	ci right 3.331705e-02	k: 89378	n:2700000
CLEC12B   2700000 perm   3238 sec   (834 perm/sec)   p_kst 3.310296e-02   p_cons 1.338519e-03   p_joint 3.777778e-04

Joint ci ratio: 1.257762e-01	ci left: 3.357638e-04	ci right 3.811822e-04	k: 970	n:2710000
Cons ci ratio: 6.506408e-02	ci left: 1.294109e-03	ci right 1.381501e-03	k: 3624	n:2710000
KS ci ratio: 1.287110e-02	ci left: 3.288143e-02	ci right 3.330776e-02	k: 89685	n:2710000
CLEC12B   2710000 perm   3260 sec   (831 perm/sec)   p_kst 3.309410e-02   p_cons 1.337269e-03   p_joint 3.579336e-04

Joint ci ratio: 1.252612e-01	ci left: 3.373782e-04	ci right 3.828142e-04	k: 978	n:2720000
Cons ci ratio: 6.490309e-02	ci left: 1.295862e-03	ci right 1.383147e-03	k: 3642	n:2720000
KS ci ratio: 1.284638e-02	ci left: 3.288698e-02	ci right 3.331255e-02	k: 90030	n:2720000
CLEC12B   2720000 perm   3283 sec   (829 perm/sec)   p_kst 3.309926e-02   p_cons 1.338971e-03   p_joint 3.595588e-04

Joint ci ratio: 1.250697e-01	ci left: 3.372069e-04	ci right 3.825453e-04	k: 981	n:2730000
Cons ci ratio: 6.480535e-02	ci left: 1.295079e-03	ci right 1.382175e-03	k: 3653	n:2730000
KS ci ratio: 1.282327e-02	ci left: 3.288518e-02	ci right 3.330995e-02	k: 90355	n:2730000
CLEC12B   2730000 perm   3306 sec   (826 perm/sec)   p_kst 3.309707e-02   p_cons 1.338095e-03   p_joint 3.593407e-04

Joint ci ratio: 1.248157e-01	ci left: 3.373904e-04	ci right 3.826546e-04	k: 985	n:2740000
Cons ci ratio: 6.469922e-02	ci left: 1.294661e-03	ci right 1.381581e-03	k: 3665	n:2740000
KS ci ratio: 1.280167e-02	ci left: 3.287648e-02	ci right 3.330042e-02	k: 90661	n:2740000
CLEC12B   2740000 perm   3328 sec   (823 perm/sec)   p_kst 3.308796e-02   p_cons 1.337591e-03   p_joint 3.594891e-04

Joint ci ratio: 1.243750e-01	ci left: 3.386297e-04	ci right 3.838879e-04	k: 992	n:2750000
Cons ci ratio: 6.454968e-02	ci left: 1.296035e-03	ci right 1.382839e-03	k: 3682	n:2750000
KS ci ratio: 1.277742e-02	ci left: 3.288162e-02	ci right 3.330482e-02	k: 91005	n:2750000
CLEC12B   2750000 perm   3350 sec   (821 perm/sec)   p_kst 3.309273e-02   p_cons 1.338909e-03   p_joint 3.607273e-04

Joint ci ratio: 1.243750e-01	ci left: 3.374027e-04	ci right 3.824970e-04	k: 992	n:2760000
Cons ci ratio: 6.447101e-02	ci left: 1.294547e-03	ci right 1.381142e-03	k: 3691	n:2760000
KS ci ratio: 1.275570e-02	ci left: 3.287480e-02	ci right 3.329719e-02	k: 91316	n:2760000
CLEC12B   2760000 perm   3373 sec   (818 perm/sec)   p_kst 3.308551e-02   p_cons 1.337319e-03   p_joint 3.594203e-04

Joint ci ratio: 1.322726e-01	ci left: 2.959994e-04	ci right 3.382697e-04	k: 877	n:2770000
Cons ci ratio: 6.438391e-02	ci left: 1.293426e-03	ci right 1.379824e-03	k: 3701	n:2770000
KS ci ratio: 1.273199e-02	ci left: 3.287848e-02	ci right 3.330012e-02	k: 91656	n:2770000
CLEC12B   2770000 perm   3395 sec   (816 perm/sec)   p_kst 3.308881e-02   p_cons 1.336101e-03   p_joint 3.166065e-04

Joint ci ratio: 1.318975e-01	ci left: 2.966738e-04	ci right 3.389108e-04	k: 882	n:2780000
Cons ci ratio: 6.428850e-02	ci left: 1.292666e-03	ci right 1.378881e-03	k: 3712	n:2780000
KS ci ratio: 1.270778e-02	ci left: 3.288535e-02	ci right 3.330627e-02	k: 92005	n:2780000
CLEC12B   2780000 perm   3418 sec   (813 perm/sec)   p_kst 3.309532e-02   p_cons 1.335252e-03   p_joint 3.172662e-04

Joint ci ratio: 1.316740e-01	ci left: 2.966503e-04	ci right 3.388068e-04	k: 885	n:2790000
Cons ci ratio: 6.420214e-02	ci left: 1.291560e-03	ci right 1.377581e-03	k: 3722	n:2790000
KS ci ratio: 1.268569e-02	ci left: 3.288217e-02	ci right 3.330231e-02	k: 92326	n:2790000
CLEC12B   2790000 perm   3441 sec   (811 perm/sec)   p_kst 3.309176e-02   p_cons 1.334050e-03   p_joint 3.172043e-04

Joint ci ratio: 1.314517e-01	ci left: 2.966270e-04	ci right 3.387034e-04	k: 888	n:2800000
Cons ci ratio: 6.401319e-02	ci left: 1.294678e-03	ci right 1.380644e-03	k: 3744	n:2800000
KS ci ratio: 1.266089e-02	ci left: 3.289325e-02	ci right 3.331271e-02	k: 92687	n:2800000
CLEC12B   2800000 perm   3464 sec   (808 perm/sec)   p_kst 3.310250e-02   p_cons 1.337143e-03   p_joint 3.171429e-04

Joint ci ratio: 1.313041e-01	ci left: 2.962597e-04	ci right 3.382332e-04	k: 890	n:2810000
Cons ci ratio: 6.387685e-02	ci left: 1.295674e-03	ci right 1.381516e-03	k: 3760	n:2810000
KS ci ratio: 1.263905e-02	ci left: 3.289007e-02	ci right 3.330876e-02	k: 93008	n:2810000
CLEC12B   2810000 perm   3488 sec   (806 perm/sec)   p_kst 3.309893e-02   p_cons 1.338078e-03   p_joint 3.167260e-04

Joint ci ratio: 1.310836e-01	ci left: 2.962381e-04	ci right 3.381325e-04	k: 893	n:2820000
Cons ci ratio: 6.374983e-02	ci left: 1.296314e-03	ci right 1.382021e-03	k: 3775	n:2820000
KS ci ratio: 1.261599e-02	ci left: 3.289362e-02	ci right 3.331159e-02	k: 93348	n:2820000
CLEC12B   2820000 perm   3511 sec   (803 perm/sec)   p_kst 3.310213e-02   p_cons 1.338652e-03   p_joint 3.166667e-04

Joint ci ratio: 1.308642e-01	ci left: 2.962166e-04	ci right 3.380325e-04	k: 896	n:2830000
Cons ci ratio: 6.362357e-02	ci left: 1.296949e-03	ci right 1.382522e-03	k: 3790	n:2830000
KS ci ratio: 1.259348e-02	ci left: 3.289504e-02	ci right 3.331227e-02	k: 93682	n:2830000
CLEC12B   2830000 perm   3534 sec   (801 perm/sec)   p_kst 3.310318e-02   p_cons 1.339223e-03   p_joint 3.166078e-04

Joint ci ratio: 1.224181e-01	ci left: 3.388183e-04	ci right 3.833376e-04	k: 1024	n:2840000
Cons ci ratio: 6.349805e-02	ci left: 1.297580e-03	ci right 1.383019e-03	k: 3805	n:2840000
KS ci ratio: 1.257039e-02	ci left: 3.289996e-02	ci right 3.331649e-02	k: 94026	n:2840000
CLEC12B   2840000 perm   3558 sec   (798 perm/sec)   p_kst 3.310775e-02   p_cons 1.339789e-03   p_joint 3.605634e-04

Joint ci ratio: 1.221799e-01	ci left: 3.389900e-04	ci right 3.834390e-04	k: 1028	n:2850000
Cons ci ratio: 6.331523e-02	ci left: 1.300624e-03	ci right 1.386008e-03	k: 3827	n:2850000
KS ci ratio: 1.255011e-02	ci left: 3.289120e-02	ci right 3.330694e-02	k: 94331	n:2850000
CLEC12B   2850000 perm   3582 sec   (796 perm/sec)   p_kst 3.309860e-02   p_cons 1.342807e-03   p_joint 3.607018e-04

Joint ci ratio: 1.219431e-01	ci left: 3.391606e-04	ci right 3.835396e-04	k: 1032	n:2860000
Cons ci ratio: 6.322448e-02	ci left: 1.299862e-03	ci right 1.385069e-03	k: 3838	n:2860000
KS ci ratio: 1.252712e-02	ci left: 3.289680e-02	ci right 3.331184e-02	k: 94677	n:2860000
CLEC12B   2860000 perm   3605 sec   (793 perm/sec)   p_kst 3.310385e-02   p_cons 1.341958e-03   p_joint 3.608392e-04

Joint ci ratio: 1.298548e-01	ci left: 2.968072e-04	ci right 3.383583e-04	k: 910	n:2870000
Cons ci ratio: 6.316699e-02	ci left: 1.297733e-03	ci right 1.382721e-03	k: 3845	n:2870000
KS ci ratio: 1.250555e-02	ci left: 3.289576e-02	ci right 3.331006e-02	k: 95004	n:2870000
CLEC12B   2870000 perm   3629 sec   (791 perm/sec)   p_kst 3.310244e-02   p_cons 1.339721e-03   p_joint 3.170732e-04

Joint ci ratio: 1.295706e-01	ci left: 2.971204e-04	ci right 3.386173e-04	k: 914	n:2880000
Cons ci ratio: 6.309326e-02	ci left: 1.296303e-03	ci right 1.381094e-03	k: 3854	n:2880000
KS ci ratio: 1.248220e-02	ci left: 3.290441e-02	ci right 3.331805e-02	k: 95359	n:2880000
CLEC12B   2880000 perm   3653 sec   (788 perm/sec)   p_kst 3.311076e-02   p_cons 1.338194e-03   p_joint 3.173611e-04

Joint ci ratio: 1.212409e-01	ci left: 3.396659e-04	ci right 3.838367e-04	k: 1044	n:2890000
Cons ci ratio: 6.295456e-02	ci left: 1.297607e-03	ci right 1.382290e-03	k: 3871	n:2890000
KS ci ratio: 1.246160e-02	ci left: 3.289956e-02	ci right 3.331245e-02	k: 95675	n:2890000
CLEC12B   2890000 perm   3677 sec   (786 perm/sec)   p_kst 3.310554e-02   p_cons 1.339446e-03   p_joint 3.612457e-04

Joint ci ratio: 1.211830e-01	ci left: 3.388290e-04	ci right 3.828684e-04	k: 1045	n:2900000
Cons ci ratio: 6.283295e-02	ci left: 1.298223e-03	ci right 1.382777e-03	k: 3886	n:2900000
KS ci ratio: 1.244017e-02	ci left: 3.289955e-02	ci right 3.331173e-02	k: 96005	n:2900000
CLEC12B   2900000 perm   3701 sec   (784 perm/sec)   p_kst 3.310517e-02   p_cons 1.340000e-03   p_joint 3.603448e-04

Joint ci ratio: 1.207222e-01	ci left: 3.403306e-04	ci right 3.843849e-04	k: 1053	n:2910000
Cons ci ratio: 6.267185e-02	ci left: 1.300527e-03	ci right 1.385006e-03	k: 3906	n:2910000
KS ci ratio: 1.241811e-02	ci left: 3.290331e-02	ci right 3.331480e-02	k: 96346	n:2910000
CLEC12B   2910000 perm   3725 sec   (781 perm/sec)   p_kst 3.310859e-02   p_cons 1.342268e-03   p_joint 3.618557e-04

Joint ci ratio: 1.206078e-01	ci left: 3.398294e-04	ci right 3.837741e-04	k: 1055	n:2920000
Cons ci ratio: 6.255986e-02	ci left: 1.300793e-03	ci right 1.385132e-03	k: 3920	n:2920000
KS ci ratio: 1.239710e-02	ci left: 3.290227e-02	ci right 3.331304e-02	k: 96673	n:2920000
CLEC12B   2920000 perm   3749 sec   (779 perm/sec)   p_kst 3.310719e-02   p_cons 1.342466e-03   p_joint 3.613014e-04

Joint ci ratio: 1.204369e-01	ci left: 3.396626e-04	ci right 3.835191e-04	k: 1058	n:2930000
Cons ci ratio: 6.245642e-02	ci left: 1.300721e-03	ci right 1.384911e-03	k: 3933	n:2930000
KS ci ratio: 1.237396e-02	ci left: 3.291280e-02	ci right 3.332293e-02	k: 97034	n:2930000
CLEC12B   2930000 perm   3773 sec   (776 perm/sec)   p_kst 3.311741e-02   p_cons 1.342321e-03   p_joint 3.610922e-04

Joint ci ratio: 1.199844e-01	ci left: 3.411465e-04	ci right 3.850174e-04	k: 1066	n:2940000
Cons ci ratio: 6.233767e-02	ci left: 1.301319e-03	ci right 1.385382e-03	k: 3948	n:2940000
KS ci ratio: 1.235218e-02	ci left: 3.291682e-02	ci right 3.332628e-02	k: 97376	n:2940000
CLEC12B   2940000 perm   3798 sec   (774 perm/sec)   p_kst 3.312109e-02   p_cons 1.342857e-03   p_joint 3.625850e-04

Joint ci ratio: 1.198161e-01	ci left: 3.409765e-04	ci right 3.847597e-04	k: 1069	n:2950000
Cons ci ratio: 6.221960e-02	ci left: 1.301913e-03	ci right 1.385850e-03	k: 3963	n:2950000
KS ci ratio: 1.233033e-02	ci left: 3.292183e-02	ci right 3.333061e-02	k: 97721	n:2950000
CLEC12B   2950000 perm   3822 sec   (772 perm/sec)   p_kst 3.312576e-02   p_cons 1.343390e-03   p_joint 3.623729e-04

Joint ci ratio: 1.197602e-01	ci left: 3.401523e-04	ci right 3.838078e-04	k: 1070	n:2960000
Cons ci ratio: 6.218048e-02	ci left: 1.299178e-03	ci right 1.382884e-03	k: 3968	n:2960000
KS ci ratio: 1.231015e-02	ci left: 3.291872e-02	ci right 3.332679e-02	k: 98042	n:2960000
CLEC12B   2960000 perm   3847 sec   (769 perm/sec)   p_kst 3.312230e-02   p_cons 1.340541e-03   p_joint 3.614865e-04

Joint ci ratio: 1.195929e-01	ci left: 3.399869e-04	ci right 3.835559e-04	k: 1073	n:2970000
Cons ci ratio: 6.203991e-02	ci left: 1.300770e-03	ci right 1.384382e-03	k: 3986	n:2970000
KS ci ratio: 1.229214e-02	ci left: 3.290489e-02	ci right 3.331219e-02	k: 98331	n:2970000
CLEC12B   2970000 perm   3871 sec   (767 perm/sec)   p_kst 3.310808e-02   p_cons 1.342088e-03   p_joint 3.612795e-04

Joint ci ratio: 1.195373e-01	ci left: 3.391715e-04	ci right 3.826144e-04	k: 1074	n:2980000
Cons ci ratio: 6.192352e-02	ci left: 1.301361e-03	ci right 1.384848e-03	k: 4001	n:2980000
KS ci ratio: 1.227099e-02	ci left: 3.290788e-02	ci right 3.331451e-02	k: 98670	n:2980000
CLEC12B   2980000 perm   3896 sec   (765 perm/sec)   p_kst 3.311074e-02   p_cons 1.342617e-03   p_joint 3.604027e-04

Joint ci ratio: 1.193709e-01	ci left: 3.390105e-04	ci right 3.823681e-04	k: 1077	n:2990000
Cons ci ratio: 6.176930e-02	ci left: 1.303594e-03	ci right 1.387009e-03	k: 4021	n:2990000
KS ci ratio: 1.225001e-02	ci left: 3.291051e-02	ci right 3.331648e-02	k: 99008	n:2990000
CLEC12B   2990000 perm   3920 sec   (763 perm/sec)   p_kst 3.311304e-02   p_cons 1.344816e-03   p_joint 3.602007e-04

Joint ci ratio: 1.193156e-01	ci left: 3.382039e-04	ci right 3.814368e-04	k: 1078	n:3000000
Cons ci ratio: 6.163913e-02	ci left: 1.304828e-03	ci right 1.388139e-03	k: 4038	n:3000000
KS ci ratio: 1.223124e-02	ci left: 3.290217e-02	ci right 3.330740e-02	k: 99313	n:3000000
CLEC12B   3000000 perm   3945 sec   (760 perm/sec)   p_kst 3.310433e-02   p_cons 1.346000e-03   p_joint 3.593333e-04

Joint ci ratio: 1.190950e-01	ci left: 3.383695e-04	ci right 3.815381e-04	k: 1082	n:3010000
Cons ci ratio: 6.155539e-02	ci left: 1.304091e-03	ci right 1.387238e-03	k: 4049	n:3010000
KS ci ratio: 1.221097e-02	ci left: 3.290216e-02	ci right 3.330672e-02	k: 99643	n:3010000
CLEC12B   3010000 perm   3970 sec   (758 perm/sec)   p_kst 3.310399e-02   p_cons 1.345183e-03   p_joint 3.594684e-04

Joint ci ratio: 1.188757e-01	ci left: 3.385342e-04	ci right 3.816386e-04	k: 1086	n:3020000
Cons ci ratio: 6.141901e-02	ci left: 1.305642e-03	ci right 1.388697e-03	k: 4067	n:3020000
KS ci ratio: 1.219106e-02	ci left: 3.290083e-02	ci right 3.330471e-02	k: 99969	n:3020000
CLEC12B   3020000 perm   3995 sec   (756 perm/sec)   p_kst 3.310232e-02   p_cons 1.346689e-03   p_joint 3.596026e-04

Joint ci ratio: 1.187665e-01	ci left: 3.380574e-04	ci right 3.810587e-04	k: 1088	n:3030000
Cons ci ratio: 6.128353e-02	ci left: 1.307182e-03	ci right 1.390145e-03	k: 4085	n:3030000
KS ci ratio: 1.217105e-02	ci left: 3.290049e-02	ci right 3.330370e-02	k: 100298	n:3030000
CLEC12B   3030000 perm   4020 sec   (754 perm/sec)   p_kst 3.310165e-02   p_cons 1.348185e-03   p_joint 3.590759e-04

Joint ci ratio: 1.184948e-01	ci left: 3.385413e-04	ci right 3.814988e-04	k: 1093	n:3040000
Cons ci ratio: 6.117881e-02	ci left: 1.307417e-03	ci right 1.390248e-03	k: 4099	n:3040000
KS ci ratio: 1.214971e-02	ci left: 3.290771e-02	ci right 3.331029e-02	k: 100650	n:3040000
CLEC12B   3040000 perm   4045 sec   (752 perm/sec)   p_kst 3.310855e-02   p_cons 1.348355e-03   p_joint 3.595395e-04

Joint ci ratio: 1.182249e-01	ci left: 3.390221e-04	ci right 3.819358e-04	k: 1098	n:3050000
Cons ci ratio: 6.103749e-02	ci left: 1.309265e-03	ci right 1.392015e-03	k: 4118	n:3050000
KS ci ratio: 1.212916e-02	ci left: 3.291128e-02	ci right 3.331322e-02	k: 100991	n:3050000
CLEC12B   3050000 perm   4070 sec   (749 perm/sec)   p_kst 3.311180e-02   p_cons 1.350164e-03   p_joint 3.600000e-04

Joint ci ratio: 1.179568e-01	ci left: 3.394999e-04	ci right 3.823699e-04	k: 1103	n:3060000
Cons ci ratio: 6.092664e-02	ci left: 1.309813e-03	ci right 1.392442e-03	k: 4133	n:3060000
KS ci ratio: 1.211094e-02	ci left: 3.290309e-02	ci right 3.330433e-02	k: 101296	n:3060000
CLEC12B   3060000 perm   4095 sec   (747 perm/sec)   p_kst 3.310327e-02   p_cons 1.350654e-03   p_joint 3.604575e-04

Joint ci ratio: 1.176906e-01	ci left: 3.399747e-04	ci right 3.828010e-04	k: 1108	n:3070000
Cons ci ratio: 6.081639e-02	ci left: 1.310358e-03	ci right 1.392867e-03	k: 4148	n:3070000
KS ci ratio: 1.209267e-02	ci left: 3.289561e-02	ci right 3.329615e-02	k: 101603	n:3070000
CLEC12B   3070000 perm   4120 sec   (745 perm/sec)   p_kst 3.309544e-02   p_cons 1.351140e-03   p_joint 3.609121e-04

Joint ci ratio: 1.174789e-01	ci left: 3.401314e-04	ci right 3.828950e-04	k: 1112	n:3080000
Cons ci ratio: 6.074326e-02	ci left: 1.309301e-03	ci right 1.391641e-03	k: 4158	n:3080000
KS ci ratio: 1.207278e-02	ci left: 3.289725e-02	ci right 3.329714e-02	k: 101938	n:3080000
CLEC12B   3080000 perm   4145 sec   (743 perm/sec)   p_kst 3.309675e-02   p_cons 1.350000e-03   p_joint 3.610390e-04

Joint ci ratio: 1.172684e-01	ci left: 3.402872e-04	ci right 3.829884e-04	k: 1116	n:3090000
Cons ci ratio: 6.062673e-02	ci left: 1.310163e-03	ci right 1.392394e-03	k: 4174	n:3090000
KS ci ratio: 1.205396e-02	ci left: 3.289371e-02	ci right 3.329293e-02	k: 102257	n:3090000
CLEC12B   3090000 perm   4170 sec   (741 perm/sec)   p_kst 3.309288e-02   p_cons 1.350809e-03   p_joint 3.611650e-04

Joint ci ratio: 1.137089e-01	ci left: 3.614315e-04	ci right 4.053170e-04	k: 1187	n:3100000
Cons ci ratio: 6.051087e-02	ci left: 1.311020e-03	ci right 1.393142e-03	k: 4190	n:3100000
KS ci ratio: 1.203340e-02	ci left: 3.289984e-02	ci right 3.329845e-02	k: 102606	n:3100000
CLEC12B   3100000 perm   4196 sec   (739 perm/sec)   p_kst 3.309871e-02   p_cons 1.351613e-03   p_joint 3.829032e-04

Joint ci ratio: 1.135180e-01	ci left: 3.615189e-04	ci right 4.053365e-04	k: 1191	n:3110000
Cons ci ratio: 6.041005e-02	ci left: 1.311238e-03	ci right 1.393232e-03	k: 4204	n:3110000
KS ci ratio: 1.201410e-02	ci left: 3.289985e-02	ci right 3.329781e-02	k: 102936	n:3110000
CLEC12B   3110000 perm   4222 sec   (737 perm/sec)   p_kst 3.309839e-02   p_cons 1.351768e-03   p_joint 3.829582e-04

Joint ci ratio: 1.133754e-01	ci left: 3.612945e-04	ci right 4.050261e-04	k: 1194	n:3120000
Cons ci ratio: 6.028827e-02	ci left: 1.312402e-03	ci right 1.394297e-03	k: 4221	n:3120000
KS ci ratio: 1.199453e-02	ci left: 3.290177e-02	ci right 3.329910e-02	k: 103272	n:3120000
CLEC12B   3120000 perm   4248 sec   (734 perm/sec)   p_kst 3.310000e-02   p_cons 1.352885e-03   p_joint 3.826923e-04

Joint ci ratio: 1.133281e-01	ci left: 3.604506e-04	ci right 4.040607e-04	k: 1195	n:3130000
Cons ci ratio: 6.020991e-02	ci left: 1.311671e-03	ci right 1.393410e-03	k: 4232	n:3130000
KS ci ratio: 1.197548e-02	ci left: 3.290145e-02	ci right 3.329814e-02	k: 103601	n:3130000
CLEC12B   3130000 perm   4274 sec   (732 perm/sec)   p_kst 3.309936e-02   p_cons 1.352077e-03   p_joint 3.817891e-04

Joint ci ratio: 1.131390e-01	ci left: 3.605405e-04	ci right 4.040838e-04	k: 1199	n:3140000
Cons ci ratio: 6.010350e-02	ci left: 1.312199e-03	ci right 1.393821e-03	k: 4247	n:3140000
KS ci ratio: 1.195824e-02	ci left: 3.289192e-02	ci right 3.328792e-02	k: 103901	n:3140000
CLEC12B   3140000 perm   4299 sec   (730 perm/sec)   p_kst 3.308949e-02   p_cons 1.352548e-03   p_joint 3.818471e-04

Joint ci ratio: 1.127637e-01	ci left: 3.618639e-04	ci right 4.054124e-04	k: 1207	n:3150000
Cons ci ratio: 6.003292e-02	ci left: 1.311160e-03	ci right 1.392619e-03	k: 4257	n:3150000
KS ci ratio: 1.193704e-02	ci left: 3.290398e-02	ci right 3.329942e-02	k: 104269	n:3150000
CLEC12B   3150000 perm   4325 sec   (728 perm/sec)   p_kst 3.310127e-02   p_cons 1.351429e-03   p_joint 3.831746e-04

Joint ci ratio: 1.126239e-01	ci left: 3.616413e-04	ci right 4.051056e-04	k: 1210	n:3160000
Cons ci ratio: 5.995555e-02	ci left: 1.310439e-03	ci right 1.391745e-03	k: 4268	n:3160000
KS ci ratio: 1.191773e-02	ci left: 3.290649e-02	ci right 3.330132e-02	k: 104607	n:3160000
CLEC12B   3160000 perm   4351 sec   (726 perm/sec)   p_kst 3.310348e-02   p_cons 1.350633e-03   p_joint 3.829114e-04

Joint ci ratio: 1.125311e-01	ci left: 3.611136e-04	ci right 4.044763e-04	k: 1212	n:3170000
Cons ci ratio: 5.986447e-02	ci left: 1.310345e-03	ci right 1.391517e-03	k: 4281	n:3170000
KS ci ratio: 1.190132e-02	ci left: 3.289390e-02	ci right 3.328803e-02	k: 104897	n:3170000
CLEC12B   3170000 perm   4377 sec   (724 perm/sec)   p_kst 3.309054e-02   p_cons 1.350473e-03   p_joint 3.823344e-04

Joint ci ratio: 1.124848e-01	ci left: 3.602837e-04	ci right 4.035277e-04	k: 1213	n:3180000
Cons ci ratio: 5.978078e-02	ci left: 1.309941e-03	ci right 1.390971e-03	k: 4293	n:3180000
KS ci ratio: 1.188247e-02	ci left: 3.289486e-02	ci right 3.328838e-02	k: 105230	n:3180000
CLEC12B   3180000 perm   4403 sec   (722 perm/sec)   p_kst 3.309119e-02   p_cons 1.350000e-03   p_joint 3.814465e-04

Joint ci ratio: 1.100193e-01	ci left: 3.759161e-04	ci right 4.199834e-04	k: 1268	n:3190000
Cons ci ratio: 5.971132e-02	ci left: 1.308923e-03	ci right 1.389792e-03	k: 4303	n:3190000
KS ci ratio: 1.186424e-02	ci left: 3.289301e-02	ci right 3.328589e-02	k: 105554	n:3190000
CLEC12B   3190000 perm   4429 sec   (720 perm/sec)   p_kst 3.308903e-02   p_cons 1.348903e-03   p_joint 3.974922e-04

Joint ci ratio: 1.099327e-01	ci left: 3.753492e-04	ci right 4.193131e-04	k: 1270	n:3200000
Cons ci ratio: 5.962827e-02	ci left: 1.308527e-03	ci right 1.389255e-03	k: 4315	n:3200000
KS ci ratio: 1.184608e-02	ci left: 3.289117e-02	ci right 3.328343e-02	k: 105878	n:3200000
CLEC12B   3200000 perm   4454 sec   (718 perm/sec)   p_kst 3.308688e-02   p_cons 1.348438e-03   p_joint 3.968750e-04

Joint ci ratio: 1.097171e-01	ci left: 3.756947e-04	ci right 4.196073e-04	k: 1275	n:3210000
Cons ci ratio: 5.951803e-02	ci left: 1.309360e-03	ci right 1.389986e-03	k: 4331	n:3210000
KS ci ratio: 1.182807e-02	ci left: 3.288903e-02	ci right 3.328066e-02	k: 106201	n:3210000
CLEC12B   3210000 perm   4481 sec   (716 perm/sec)   p_kst 3.308442e-02   p_cons 1.349221e-03   p_joint 3.971963e-04

Joint ci ratio: 1.095455e-01	ci left: 3.757361e-04	ci right 4.195804e-04	k: 1279	n:3220000
Cons ci ratio: 5.944263e-02	ci left: 1.308659e-03	ci right 1.389136e-03	k: 4342	n:3220000
KS ci ratio: 1.181060e-02	ci left: 3.288443e-02	ci right 3.327542e-02	k: 106516	n:3220000
CLEC12B   3220000 perm   4507 sec   (714 perm/sec)   p_kst 3.307950e-02   p_cons 1.348447e-03   p_joint 3.972050e-04

Joint ci ratio: 1.093748e-01	ci left: 3.757773e-04	ci right 4.195537e-04	k: 1283	n:3230000
Cons ci ratio: 5.934705e-02	ci left: 1.308878e-03	ci right 1.389234e-03	k: 4356	n:3230000
KS ci ratio: 1.179286e-02	ci left: 3.288170e-02	ci right 3.327207e-02	k: 106837	n:3230000
CLEC12B   3230000 perm   4534 sec   (712 perm/sec)   p_kst 3.307647e-02   p_cons 1.348607e-03   p_joint 3.972136e-04

Joint ci ratio: 1.092048e-01	ci left: 3.758184e-04	ci right 4.195271e-04	k: 1287	n:3240000
Cons ci ratio: 5.925871e-02	ci left: 1.308791e-03	ci right 1.389018e-03	k: 4369	n:3240000
KS ci ratio: 1.177389e-02	ci left: 3.288608e-02	ci right 3.327587e-02	k: 107181	n:3240000
CLEC12B   3240000 perm   4561 sec   (710 perm/sec)   p_kst 3.308056e-02   p_cons 1.348457e-03   p_joint 3.972222e-04

Joint ci ratio: 1.090356e-01	ci left: 3.758592e-04	ci right 4.195006e-04	k: 1291	n:3250000
Cons ci ratio: 5.919782e-02	ci left: 1.307492e-03	ci right 1.387554e-03	k: 4378	n:3250000
KS ci ratio: 1.175581e-02	ci left: 3.288613e-02	ci right 3.327532e-02	k: 107511	n:3250000
CLEC12B   3250000 perm   4587 sec   (708 perm/sec)   p_kst 3.308031e-02   p_cons 1.347077e-03   p_joint 3.972308e-04

Joint ci ratio: 1.088672e-01	ci left: 3.758998e-04	ci right 4.194742e-04	k: 1295	n:3260000
Cons ci ratio: 5.910342e-02	ci left: 1.307712e-03	ci right 1.387656e-03	k: 4392	n:3260000
KS ci ratio: 1.173714e-02	ci left: 3.288985e-02	ci right 3.327846e-02	k: 107853	n:3260000
CLEC12B   3260000 perm   4613 sec   (707 perm/sec)   p_kst 3.308374e-02   p_cons 1.347239e-03   p_joint 3.972393e-04

Joint ci ratio: 1.086996e-01	ci left: 3.759402e-04	ci right 4.194479e-04	k: 1299	n:3270000
Cons ci ratio: 5.903629e-02	ci left: 1.306726e-03	ci right 1.386516e-03	k: 4402	n:3270000
KS ci ratio: 1.171799e-02	ci left: 3.289660e-02	ci right 3.328465e-02	k: 108205	n:3270000
CLEC12B   3270000 perm   4640 sec   (705 perm/sec)   p_kst 3.309021e-02   p_cons 1.346177e-03   p_joint 3.972477e-04

Joint ci ratio: 1.084081e-01	ci left: 3.768703e-04	ci right 4.203611e-04	k: 1306	n:3280000
Cons ci ratio: 5.886930e-02	ci left: 1.310252e-03	ci right 1.390023e-03	k: 4427	n:3280000
KS ci ratio: 1.170017e-02	ci left: 3.289662e-02	ci right 3.328408e-02	k: 108535	n:3280000
CLEC12B   3280000 perm   4666 sec   (703 perm/sec)   p_kst 3.308994e-02   p_cons 1.349695e-03   p_joint 3.981707e-04

Joint ci ratio: 1.082013e-01	ci left: 3.772033e-04	ci right 4.206444e-04	k: 1311	n:3290000
Cons ci ratio: 5.876320e-02	ci left: 1.311061e-03	ci right 1.390733e-03	k: 4443	n:3290000
KS ci ratio: 1.168292e-02	ci left: 3.289392e-02	ci right 3.328077e-02	k: 108856	n:3290000
CLEC12B   3290000 perm   4693 sec   (701 perm/sec)   p_kst 3.308693e-02   p_cons 1.350456e-03   p_joint 3.984802e-04

Joint ci ratio: 1.080367e-01	ci left: 3.772397e-04	ci right 4.206146e-04	k: 1315	n:3300000
Cons ci ratio: 5.865768e-02	ci left: 1.311866e-03	ci right 1.391438e-03	k: 4459	n:3300000
KS ci ratio: 1.166658e-02	ci left: 3.288669e-02	ci right 3.327291e-02	k: 109162	n:3300000
CLEC12B   3300000 perm   4719 sec   (699 perm/sec)   p_kst 3.307939e-02   p_cons 1.351212e-03   p_joint 3.984848e-04

Joint ci ratio: 1.077505e-01	ci left: 3.781577e-04	ci right 4.215157e-04	k: 1322	n:3310000
Cons ci ratio: 5.851347e-02	ci left: 1.314451e-03	ci right 1.393978e-03	k: 4481	n:3310000
KS ci ratio: 1.164827e-02	ci left: 3.289066e-02	ci right 3.327632e-02	k: 109505	n:3310000
CLEC12B   3310000 perm   4746 sec   (697 perm/sec)   p_kst 3.308308e-02   p_cons 1.353776e-03   p_joint 3.993958e-04

Joint ci ratio: 1.076692e-01	ci left: 3.776048e-04	ci right 4.208647e-04	k: 1324	n:3320000
Cons ci ratio: 5.840928e-02	ci left: 1.315241e-03	ci right 1.394669e-03	k: 4497	n:3320000
KS ci ratio: 1.163033e-02	ci left: 3.289310e-02	ci right 3.327819e-02	k: 109843	n:3320000
CLEC12B   3320000 perm   4773 sec   (696 perm/sec)   p_kst 3.308524e-02   p_cons 1.354518e-03   p_joint 3.987952e-04

Joint ci ratio: 1.075070e-01	ci left: 3.776398e-04	ci right 4.208343e-04	k: 1328	n:3330000
Cons ci ratio: 5.836394e-02	ci left: 1.313363e-03	ci right 1.392614e-03	k: 4504	n:3330000
KS ci ratio: 1.161464e-02	ci left: 3.288355e-02	ci right 3.326801e-02	k: 110141	n:3330000
CLEC12B   3330000 perm   4800 sec   (694 perm/sec)   p_kst 3.307538e-02   p_cons 1.352553e-03   p_joint 3.987988e-04

Joint ci ratio: 1.072250e-01	ci left: 3.785487e-04	ci right 4.217264e-04	k: 1335	n:3340000
Cons ci ratio: 5.830577e-02	ci left: 1.312086e-03	ci right 1.391178e-03	k: 4513	n:3340000
KS ci ratio: 1.159766e-02	ci left: 3.288153e-02	ci right 3.326539e-02	k: 110464	n:3340000
CLEC12B   3340000 perm   4827 sec   (692 perm/sec)   p_kst 3.307305e-02   p_cons 1.351198e-03   p_joint 3.997006e-04

Joint ci ratio: 1.070249e-01	ci left: 3.788712e-04	ci right 4.220000e-04	k: 1340	n:3350000
Cons ci ratio: 5.824133e-02	ci left: 1.311111e-03	ci right 1.390054e-03	k: 4523	n:3350000
KS ci ratio: 1.158189e-02	ci left: 3.287326e-02	ci right 3.325650e-02	k: 110766	n:3350000
CLEC12B   3350000 perm   4854 sec   (690 perm/sec)   p_kst 3.306448e-02   p_cons 1.350149e-03   p_joint 4.000000e-04

Joint ci ratio: 1.069054e-01	ci left: 3.786126e-04	ci right 4.216608e-04	k: 1343	n:3360000
Cons ci ratio: 5.814500e-02	ci left: 1.311608e-03	ci right 1.390446e-03	k: 4538	n:3360000
KS ci ratio: 1.156398e-02	ci left: 3.287721e-02	ci right 3.325990e-02	k: 111109	n:3360000
CLEC12B   3360000 perm   4882 sec   (688 perm/sec)   p_kst 3.306815e-02   p_cons 1.350595e-03   p_joint 3.997024e-04

Joint ci ratio: 1.068259e-01	ci left: 3.780667e-04	ci right 4.210189e-04	k: 1345	n:3370000
Cons ci ratio: 5.802364e-02	ci left: 1.313272e-03	ci right 1.392040e-03	k: 4557	n:3370000
KS ci ratio: 1.154620e-02	ci left: 3.288084e-02	ci right 3.326299e-02	k: 111451	n:3370000
CLEC12B   3370000 perm   4910 sec   (686 perm/sec)   p_kst 3.307151e-02   p_cons 1.352226e-03   p_joint 3.991098e-04

Joint ci ratio: 1.067071e-01	ci left: 3.778120e-04	ci right 4.206846e-04	k: 1348	n:3380000
Cons ci ratio: 5.797283e-02	ci left: 1.311719e-03	ci right 1.390323e-03	k: 4565	n:3380000
KS ci ratio: 1.152968e-02	ci left: 3.287796e-02	ci right 3.325952e-02	k: 111771	n:3380000
CLEC12B   3380000 perm   4937 sec   (685 perm/sec)   p_kst 3.306834e-02   p_cons 1.350592e-03   p_joint 3.988166e-04

Joint ci ratio: 1.084503e-01	ci left: 3.643543e-04	ci right 4.064183e-04	k: 1305	n:3390000
Cons ci ratio: 5.791582e-02	ci left: 1.310466e-03	ci right 1.388915e-03	k: 4574	n:3390000
KS ci ratio: 1.151132e-02	ci left: 3.288569e-02	ci right 3.326673e-02	k: 112127	n:3390000
CLEC12B   3390000 perm   4965 sec   (683 perm/sec)   p_kst 3.307581e-02   p_cons 1.349263e-03   p_joint 3.849558e-04

Joint ci ratio: 1.083674e-01	ci left: 3.638550e-04	ci right 4.058271e-04	k: 1307	n:3400000
Cons ci ratio: 5.783371e-02	ci left: 1.310380e-03	ci right 1.388708e-03	k: 4587	n:3400000
KS ci ratio: 1.149659e-02	ci left: 3.287372e-02	ci right 3.325413e-02	k: 112416	n:3400000
CLEC12B   3400000 perm   4993 sec   (681 perm/sec)   p_kst 3.306353e-02   p_cons 1.349118e-03   p_joint 3.844118e-04

Joint ci ratio: 1.082021e-01	ci left: 3.639292e-04	ci right 4.058418e-04	k: 1311	n:3410000
Cons ci ratio: 5.773939e-02	ci left: 1.310873e-03	ci right 1.389098e-03	k: 4602	n:3410000
KS ci ratio: 1.147959e-02	ci left: 3.287469e-02	ci right 3.325455e-02	k: 112749	n:3410000
CLEC12B   3410000 perm   5021 sec   (679 perm/sec)   p_kst 3.306422e-02   p_cons 1.349560e-03   p_joint 3.844575e-04

Joint ci ratio: 1.078736e-01	ci left: 3.651411e-04	ci right 4.070575e-04	k: 1319	n:3420000
Cons ci ratio: 5.766429e-02	ci left: 1.310498e-03	ci right 1.388596e-03	k: 4614	n:3420000
KS ci ratio: 1.146084e-02	ci left: 3.288586e-02	ci right 3.326522e-02	k: 113117	n:3420000
CLEC12B   3420000 perm   5049 sec   (677 perm/sec)   p_kst 3.307515e-02   p_cons 1.349123e-03   p_joint 3.856725e-04

Joint ci ratio: 1.078328e-01	ci left: 3.643602e-04	ci right 4.061701e-04	k: 1320	n:3430000
Cons ci ratio: 5.760194e-02	ci left: 1.309550e-03	ci right 1.387505e-03	k: 4624	n:3430000
KS ci ratio: 1.144437e-02	ci left: 3.288476e-02	ci right 3.326355e-02	k: 113443	n:3430000
CLEC12B   3430000 perm   5077 sec   (676 perm/sec)   p_kst 3.307376e-02   p_cons 1.348105e-03   p_joint 3.848397e-04

Joint ci ratio: 1.076293e-01	ci left: 3.647153e-04	ci right 4.064820e-04	k: 1325	n:3440000
Cons ci ratio: 5.746536e-02	ci left: 1.312047e-03	ci right 1.389959e-03	k: 4646	n:3440000
KS ci ratio: 1.142641e-02	ci left: 3.289236e-02	ci right 3.327064e-02	k: 113799	n:3440000
CLEC12B   3440000 perm   5105 sec   (674 perm/sec)   p_kst 3.308110e-02   p_cons 1.350581e-03   p_joint 3.851744e-04

Joint ci ratio: 1.075888e-01	ci left: 3.639402e-04	ci right 4.056015e-04	k: 1326	n:3450000
Cons ci ratio: 5.736667e-02	ci left: 1.312815e-03	ci right 1.390634e-03	k: 4662	n:3450000
KS ci ratio: 1.141009e-02	ci left: 3.289124e-02	ci right 3.326897e-02	k: 114125	n:3450000
CLEC12B   3450000 perm   5133 sec   (672 perm/sec)   p_kst 3.307971e-02   p_cons 1.351304e-03   p_joint 3.843478e-04

Joint ci ratio: 1.074270e-01	ci left: 3.640134e-04	ci right 4.056164e-04	k: 1330	n:3460000
Cons ci ratio: 5.727461e-02	ci left: 1.313294e-03	ci right 1.391013e-03	k: 4677	n:3460000
KS ci ratio: 1.139507e-02	ci left: 3.288321e-02	ci right 3.326035e-02	k: 114427	n:3460000
CLEC12B   3460000 perm   5162 sec   (670 perm/sec)   p_kst 3.307139e-02   p_cons 1.351734e-03   p_joint 3.843931e-04

Joint ci ratio: 1.073061e-01	ci left: 3.638057e-04	ci right 4.053352e-04	k: 1333	n:3470000
Cons ci ratio: 5.717079e-02	ci left: 1.314338e-03	ci right 1.391973e-03	k: 4694	n:3470000
KS ci ratio: 1.137996e-02	ci left: 3.287609e-02	ci right 3.325264e-02	k: 114732	n:3470000
CLEC12B   3470000 perm   5190 sec   (669 perm/sec)   p_kst 3.306398e-02   p_cons 1.352738e-03   p_joint 3.841499e-04

Joint ci ratio: 1.139514e-01	ci left: 3.205686e-04	ci right 3.595811e-04	k: 1182	n:3480000
Cons ci ratio: 5.711611e-02	ci left: 1.313111e-03	ci right 1.390596e-03	k: 4703	n:3480000
KS ci ratio: 1.136404e-02	ci left: 3.287389e-02	ci right 3.324988e-02	k: 115054	n:3480000
CLEC12B   3480000 perm   5219 sec   (667 perm/sec)   p_kst 3.306149e-02   p_cons 1.351437e-03   p_joint 3.396552e-04

Joint ci ratio: 1.071057e-01	ci left: 3.631151e-04	ci right 4.044834e-04	k: 1338	n:3490000
Cons ci ratio: 5.702525e-02	ci left: 1.313585e-03	ci right 1.390971e-03	k: 4718	n:3490000
KS ci ratio: 1.134727e-02	ci left: 3.287684e-02	ci right 3.325231e-02	k: 115394	n:3490000
CLEC12B   3490000 perm   5247 sec   (665 perm/sec)   p_kst 3.306418e-02   p_cons 1.351862e-03   p_joint 3.833811e-04

Joint ci ratio: 1.068665e-01	ci left: 3.637460e-04	ci right 4.050879e-04	k: 1344	n:3500000
Cons ci ratio: 5.692278e-02	ci left: 1.314620e-03	ci right 1.391923e-03	k: 4735	n:3500000
KS ci ratio: 1.133012e-02	ci left: 3.288233e-02	ci right 3.325730e-02	k: 115743	n:3500000
CLEC12B   3500000 perm   5276 sec   (663 perm/sec)   p_kst 3.306943e-02   p_cons 1.352857e-03   p_joint 3.840000e-04

Joint ci ratio: 1.065894e-01	ci left: 3.646508e-04	ci right 4.059813e-04	k: 1351	n:3510000
Cons ci ratio: 5.683883e-02	ci left: 1.314806e-03	ci right 1.392003e-03	k: 4749	n:3510000
KS ci ratio: 1.131400e-02	ci left: 3.288240e-02	ci right 3.325683e-02	k: 116073	n:3510000
CLEC12B   3510000 perm   5305 sec   (662 perm/sec)   p_kst 3.306923e-02   p_cons 1.352991e-03   p_joint 3.849003e-04

Joint ci ratio: 1.064713e-01	ci left: 3.644444e-04	ci right 4.057029e-04	k: 1354	n:3520000
Cons ci ratio: 5.675525e-02	ci left: 1.314992e-03	ci right 1.392082e-03	k: 4763	n:3520000
KS ci ratio: 1.129770e-02	ci left: 3.288389e-02	ci right 3.325779e-02	k: 116408	n:3520000
CLEC12B   3520000 perm   5334 sec   (660 perm/sec)   p_kst 3.307045e-02   p_cons 1.353125e-03   p_joint 3.846591e-04

Joint ci ratio: 1.062754e-01	ci left: 3.647907e-04	ci right 4.060077e-04	k: 1359	n:3530000
Cons ci ratio: 5.663644e-02	ci left: 1.316852e-03	ci right 1.393885e-03	k: 4783	n:3530000
KS ci ratio: 1.128122e-02	ci left: 3.288678e-02	ci right 3.326016e-02	k: 116748	n:3530000
CLEC12B   3530000 perm   5362 sec   (658 perm/sec)   p_kst 3.307309e-02   p_cons 1.354958e-03   p_joint 3.849858e-04

Joint ci ratio: 1.059254e-01	ci left: 3.662352e-04	ci right 4.074706e-04	k: 1368	n:3540000
Cons ci ratio: 5.656555e-02	ci left: 1.316474e-03	ci right 1.393385e-03	k: 4795	n:3540000
KS ci ratio: 1.126636e-02	ci left: 3.288092e-02	ci right 3.325374e-02	k: 117057	n:3540000
CLEC12B   3540000 perm   5391 sec   (657 perm/sec)   p_kst 3.306695e-02   p_cons 1.354520e-03   p_joint 3.864407e-04

Joint ci ratio: 1.057710e-01	ci left: 3.663005e-04	ci right 4.074794e-04	k: 1372	n:3550000
Cons ci ratio: 5.650670e-02	ci left: 1.315543e-03	ci right 1.392317e-03	k: 4805	n:3550000
KS ci ratio: 1.125017e-02	ci left: 3.288296e-02	ci right 3.325527e-02	k: 117394	n:3550000
CLEC12B   3550000 perm   5420 sec   (655 perm/sec)   p_kst 3.306873e-02   p_cons 1.353521e-03   p_joint 3.864789e-04

Joint ci ratio: 1.056173e-01	ci left: 3.663654e-04	ci right 4.074881e-04	k: 1376	n:3560000
Cons ci ratio: 5.643044e-02	ci left: 1.315448e-03	ci right 1.392109e-03	k: 4818	n:3560000
KS ci ratio: 1.123449e-02	ci left: 3.288247e-02	ci right 3.325425e-02	k: 117722	n:3560000
CLEC12B   3560000 perm   5450 sec   (653 perm/sec)   p_kst 3.306798e-02   p_cons 1.353371e-03   p_joint 3.865169e-04

Joint ci ratio: 1.054260e-01	ci left: 3.667028e-04	ci right 4.077841e-04	k: 1381	n:3570000
Cons ci ratio: 5.637785e-02	ci left: 1.314248e-03	ci right 1.390766e-03	k: 4827	n:3570000
KS ci ratio: 1.122054e-02	ci left: 3.287248e-02	ci right 3.324368e-02	k: 118016	n:3570000
CLEC12B   3570000 perm   5479 sec   (652 perm/sec)   p_kst 3.305770e-02   p_cons 1.352101e-03   p_joint 3.868347e-04

Joint ci ratio: 1.053118e-01	ci left: 3.664944e-04	ci right 4.075051e-04	k: 1384	n:3580000
Cons ci ratio: 5.631958e-02	ci left: 1.313331e-03	ci right 1.389714e-03	k: 4837	n:3580000
KS ci ratio: 1.120636e-02	ci left: 3.286422e-02	ci right 3.323486e-02	k: 118316	n:3580000
CLEC12B   3580000 perm   5508 sec   (650 perm/sec)   p_kst 3.304916e-02   p_cons 1.351117e-03   p_joint 3.865922e-04

Joint ci ratio: 1.116169e-01	ci left: 3.242809e-04	ci right 3.628835e-04	k: 1232	n:3590000
Cons ci ratio: 5.625568e-02	ci left: 1.312694e-03	ci right 1.388950e-03	k: 4848	n:3590000
KS ci ratio: 1.119081e-02	ci left: 3.286407e-02	ci right 3.323418e-02	k: 118645	n:3590000
CLEC12B   3590000 perm   5537 sec   (648 perm/sec)   p_kst 3.304875e-02   p_cons 1.350418e-03   p_joint 3.431755e-04

Joint ci ratio: 1.114363e-01	ci left: 3.244602e-04	ci right 3.630176e-04	k: 1236	n:3600000
Cons ci ratio: 5.616308e-02	ci left: 1.313429e-03	ci right 1.389599e-03	k: 4864	n:3600000
KS ci ratio: 1.117621e-02	ci left: 3.285892e-02	ci right 3.322850e-02	k: 118956	n:3600000
CLEC12B   3600000 perm   5567 sec   (647 perm/sec)   p_kst 3.304333e-02   p_cons 1.351111e-03   p_joint 3.433333e-04

Joint ci ratio: 1.112117e-01	ci left: 3.249079e-04	ci right 3.634356e-04	k: 1241	n:3610000
Cons ci ratio: 5.610548e-02	ci left: 1.312522e-03	ci right 1.388558e-03	k: 4874	n:3610000
KS ci ratio: 1.116151e-02	ci left: 3.285464e-02	ci right 3.322367e-02	k: 119270	n:3610000
CLEC12B   3610000 perm   5596 sec   (645 perm/sec)   p_kst 3.303878e-02   p_cons 1.350139e-03   p_joint 3.437673e-04

Joint ci ratio: 1.023951e-01	ci left: 3.839704e-04	ci right 4.256753e-04	k: 1464	n:3620000
Cons ci ratio: 5.603656e-02	ci left: 1.312165e-03	ci right 1.388084e-03	k: 4886	n:3620000
KS ci ratio: 1.114606e-02	ci left: 3.285506e-02	ci right 3.322359e-02	k: 119601	n:3620000
CLEC12B   3620000 perm   5626 sec   (643 perm/sec)   p_kst 3.303895e-02   p_cons 1.349724e-03   p_joint 4.044199e-04

Joint ci ratio: 1.023253e-01	ci left: 3.834495e-04	ci right 4.250677e-04	k: 1466	n:3630000
Cons ci ratio: 5.596218e-02	ci left: 1.312081e-03	ci right 1.387891e-03	k: 4899	n:3630000
KS ci ratio: 1.112980e-02	ci left: 3.286043e-02	ci right 3.322847e-02	k: 119950	n:3630000
CLEC12B   3630000 perm   5655 sec   (642 perm/sec)   p_kst 3.304408e-02   p_cons 1.349587e-03   p_joint 4.038567e-04

Joint ci ratio: 1.022905e-01	ci left: 3.826638e-04	ci right 4.241817e-04	k: 1467	n:3640000
Cons ci ratio: 5.587671e-02	ci left: 1.312540e-03	ci right 1.388257e-03	k: 4914	n:3640000
KS ci ratio: 1.111486e-02	ci left: 3.285864e-02	ci right 3.322617e-02	k: 120273	n:3640000
CLEC12B   3640000 perm   5685 sec   (640 perm/sec)   p_kst 3.304203e-02   p_cons 1.350000e-03   p_joint 4.030220e-04

Joint ci ratio: 1.082034e-01	ci left: 3.399994e-04	ci right 3.791566e-04	k: 1311	n:3650000
Cons ci ratio: 5.578030e-02	ci left: 1.313536e-03	ci right 1.389176e-03	k: 4931	n:3650000
KS ci ratio: 1.109931e-02	ci left: 3.286069e-02	ci right 3.322772e-02	k: 120610	n:3650000
CLEC12B   3650000 perm   5715 sec   (639 perm/sec)   p_kst 3.304384e-02   p_cons 1.350959e-03   p_joint 3.591781e-04

Joint ci ratio: 1.082035e-01	ci left: 3.390704e-04	ci right 3.781206e-04	k: 1311	n:3660000
Cons ci ratio: 5.570130e-02	ci left: 1.313719e-03	ci right 1.389259e-03	k: 4945	n:3660000
KS ci ratio: 1.108363e-02	ci left: 3.286382e-02	ci right 3.323036e-02	k: 120951	n:3660000
CLEC12B   3660000 perm   5744 sec   (637 perm/sec)   p_kst 3.304672e-02   p_cons 1.351093e-03   p_joint 3.581967e-04

Joint ci ratio: 1.079979e-01	ci left: 3.394721e-04	ci right 3.784895e-04	k: 1316	n:3670000
Cons ci ratio: 5.562263e-02	ci left: 1.313901e-03	ci right 1.389341e-03	k: 4959	n:3670000
KS ci ratio: 1.106954e-02	ci left: 3.285823e-02	ci right 3.322425e-02	k: 121260	n:3670000
CLEC12B   3670000 perm   5774 sec   (636 perm/sec)   p_kst 3.304087e-02   p_cons 1.351226e-03   p_joint 3.585831e-04

Joint ci ratio: 1.078751e-01	ci left: 3.393428e-04	ci right 3.782982e-04	k: 1319	n:3680000
Cons ci ratio: 5.553870e-02	ci left: 1.314350e-03	ci right 1.389699e-03	k: 4974	n:3680000
KS ci ratio: 1.105366e-02	ci left: 3.286325e-02	ci right 3.322879e-02	k: 121608	n:3680000
CLEC12B   3680000 perm   5804 sec   (634 perm/sec)   p_kst 3.304565e-02   p_cons 1.351630e-03   p_joint 3.584239e-04

Joint ci ratio: 1.016008e-01	ci left: 3.827605e-04	ci right 4.239922e-04	k: 1487	n:3690000
Cons ci ratio: 5.547185e-02	ci left: 1.313995e-03	ci right 1.389230e-03	k: 4986	n:3690000
KS ci ratio: 1.103837e-02	ci left: 3.286526e-02	ci right 3.323032e-02	k: 121945	n:3690000
CLEC12B   3690000 perm   5834 sec   (633 perm/sec)   p_kst 3.304743e-02   p_cons 1.351220e-03   p_joint 4.029810e-04

Joint ci ratio: 1.014645e-01	ci left: 3.827796e-04	ci right 4.239548e-04	k: 1491	n:3700000
Cons ci ratio: 5.540524e-02	ci left: 1.313642e-03	ci right 1.388763e-03	k: 4998	n:3700000
KS ci ratio: 1.102346e-02	ci left: 3.286538e-02	ci right 3.322994e-02	k: 122275	n:3700000
CLEC12B   3700000 perm   5864 sec   (631 perm/sec)   p_kst 3.304730e-02   p_cons 1.350811e-03   p_joint 4.029730e-04

Joint ci ratio: 1.013966e-01	ci left: 3.822733e-04	ci right 4.233648e-04	k: 1493	n:3710000
Cons ci ratio: 5.535547e-02	ci left: 1.312494e-03	ci right 1.387479e-03	k: 5007	n:3710000
KS ci ratio: 1.101043e-02	ci left: 3.285502e-02	ci right 3.321903e-02	k: 122566	n:3710000
CLEC12B   3710000 perm   5894 sec   (629 perm/sec)   p_kst 3.303666e-02   p_cons 1.349596e-03   p_joint 4.024259e-04

Joint ci ratio: 1.012273e-01	ci left: 3.825557e-04	ci right 4.236048e-04	k: 1498	n:3720000
Cons ci ratio: 5.532239e-02	ci left: 1.310556e-03	ci right 1.385385e-03	k: 5013	n:3720000
KS ci ratio: 1.099550e-02	ci left: 3.285597e-02	ci right 3.321949e-02	k: 122899	n:3720000
CLEC12B   3720000 perm   5923 sec   (628 perm/sec)   p_kst 3.303737e-02   p_cons 1.347581e-03   p_joint 4.026882e-04

Joint ci ratio: 1.010925e-01	ci left: 3.825753e-04	ci right 4.235687e-04	k: 1502	n:3730000
Cons ci ratio: 5.526733e-02	ci left: 1.309686e-03	ci right 1.384389e-03	k: 5023	n:3730000
KS ci ratio: 1.098173e-02	ci left: 3.285049e-02	ci right 3.321350e-02	k: 123208	n:3730000
CLEC12B   3730000 perm   5954 sec   (626 perm/sec)   p_kst 3.303164e-02   p_cons 1.346649e-03   p_joint 4.026810e-04

Joint ci ratio: 1.070271e-01	ci left: 3.393629e-04	ci right 3.779951e-04	k: 1340	n:3740000
Cons ci ratio: 5.517952e-02	ci left: 1.310404e-03	ci right 1.385024e-03	k: 5039	n:3740000
KS ci ratio: 1.096692e-02	ci left: 3.285145e-02	ci right 3.321398e-02	k: 123541	n:3740000
CLEC12B   3740000 perm   5984 sec   (625 perm/sec)   p_kst 3.303235e-02   p_cons 1.347326e-03   p_joint 3.582888e-04

Joint ci ratio: 1.069873e-01	ci left: 3.387174e-04	ci right 3.772609e-04	k: 1341	n:3750000
Cons ci ratio: 5.511942e-02	ci left: 1.309802e-03	ci right 1.384305e-03	k: 5050	n:3750000
KS ci ratio: 1.095258e-02	ci left: 3.285001e-02	ci right 3.321204e-02	k: 123865	n:3750000
CLEC12B   3750000 perm   6015 sec   (623 perm/sec)   p_kst 3.303067e-02   p_cons 1.346667e-03   p_joint 3.576000e-04

Joint ci ratio: 1.068679e-01	ci left: 3.385931e-04	ci right 3.770768e-04	k: 1344	n:3760000
Cons ci ratio: 5.508131e-02	ci left: 1.308155e-03	ci right 1.382510e-03	k: 5057	n:3760000
KS ci ratio: 1.093897e-02	ci left: 3.284460e-02	ci right 3.320612e-02	k: 124174	n:3760000
CLEC12B   3760000 perm   6045 sec   (622 perm/sec)   p_kst 3.302500e-02   p_cons 1.344947e-03   p_joint 3.574468e-04

Joint ci ratio: 1.068282e-01	ci left: 3.379532e-04	ci right 3.763489e-04	k: 1345	n:3770000
Cons ci ratio: 5.497811e-02	ci left: 1.309655e-03	ci right 1.383952e-03	k: 5076	n:3770000
KS ci ratio: 1.092388e-02	ci left: 3.284821e-02	ci right 3.320927e-02	k: 124517	n:3770000
CLEC12B   3770000 perm   6076 sec   (620 perm/sec)   p_kst 3.302838e-02   p_cons 1.346419e-03   p_joint 3.567639e-04

Joint ci ratio: 1.066698e-01	ci left: 3.380891e-04	ci right 3.764397e-04	k: 1349	n:3780000
Cons ci ratio: 5.490786e-02	ci left: 1.309582e-03	ci right 1.383777e-03	k: 5089	n:3780000
KS ci ratio: 1.090920e-02	ci left: 3.284969e-02	ci right 3.321028e-02	k: 124852	n:3780000
CLEC12B   3780000 perm   6107 sec   (619 perm/sec)   p_kst 3.302963e-02   p_cons 1.346296e-03   p_joint 3.568783e-04

Joint ci ratio: 1.089123e-01	ci left: 3.230762e-04	ci right 3.605437e-04	k: 1294	n:3790000
Cons ci ratio: 5.482712e-02	ci left: 1.310031e-03	ci right 1.384138e-03	k: 5104	n:3790000
KS ci ratio: 1.089554e-02	ci left: 3.284564e-02	ci right 3.320573e-02	k: 125166	n:3790000
CLEC12B   3790000 perm   6137 sec   (618 perm/sec)   p_kst 3.302533e-02   p_cons 1.346702e-03   p_joint 3.414248e-04

Joint ci ratio: 1.087864e-01	ci left: 3.229940e-04	ci right 3.604059e-04	k: 1297	n:3800000
Cons ci ratio: 5.473603e-02	ci left: 1.310996e-03	ci right 1.385031e-03	k: 5121	n:3800000
KS ci ratio: 1.087959e-02	ci left: 3.285526e-02	ci right 3.321492e-02	k: 125532	n:3800000
CLEC12B   3800000 perm   6168 sec   (616 perm/sec)   p_kst 3.303474e-02   p_cons 1.347632e-03   p_joint 3.413158e-04

Joint ci ratio: 1.085358e-01	ci left: 3.236782e-04	ci right 3.610775e-04	k: 1303	n:3810000
Cons ci ratio: 5.464540e-02	ci left: 1.311956e-03	ci right 1.385919e-03	k: 5138	n:3810000
KS ci ratio: 1.086527e-02	ci left: 3.285567e-02	ci right 3.321486e-02	k: 125863	n:3810000
CLEC12B   3810000 perm   6198 sec   (615 perm/sec)   p_kst 3.303491e-02   p_cons 1.348556e-03   p_joint 3.419948e-04

Joint ci ratio: 1.083283e-01	ci left: 3.241043e-04	ci right 3.614767e-04	k: 1308	n:3820000
Cons ci ratio: 5.459234e-02	ci left: 1.311103e-03	ci right 1.384944e-03	k: 5148	n:3820000
KS ci ratio: 1.085088e-02	ci left: 3.285686e-02	ci right 3.321558e-02	k: 126197	n:3820000
CLEC12B   3820000 perm   6228 sec   (613 perm/sec)   p_kst 3.303586e-02   p_cons 1.347644e-03   p_joint 3.424084e-04

Joint ci ratio: 1.080397e-01	ci left: 3.250363e-04	ci right 3.624100e-04	k: 1315	n:3830000
Cons ci ratio: 5.451298e-02	ci left: 1.311543e-03	ci right 1.385298e-03	k: 5163	n:3830000
KS ci ratio: 1.083694e-02	ci left: 3.285569e-02	ci right 3.321394e-02	k: 126522	n:3830000
CLEC12B   3830000 perm   6259 sec   (612 perm/sec)   p_kst 3.303446e-02   p_cons 1.348042e-03   p_joint 3.433420e-04

Joint ci ratio: 1.078759e-01	ci left: 3.252034e-04	ci right 3.625360e-04	k: 1319	n:3840000
Cons ci ratio: 5.446557e-02	ci left: 1.310439e-03	ci right 1.384066e-03	k: 5172	n:3840000
KS ci ratio: 1.082235e-02	ci left: 3.285869e-02	ci right 3.321649e-02	k: 126863	n:3840000
CLEC12B   3840000 perm   6289 sec   (611 perm/sec)   p_kst 3.303724e-02   p_cons 1.346875e-03   p_joint 3.434896e-04

Joint ci ratio: 1.075504e-01	ci left: 3.263807e-04	ci right 3.637282e-04	k: 1327	n:3850000
Cons ci ratio: 5.437102e-02	ci left: 1.311647e-03	ci right 1.385210e-03	k: 5190	n:3850000
KS ci ratio: 1.080822e-02	ci left: 3.285935e-02	ci right 3.321668e-02	k: 127195	n:3850000
CLEC12B   3850000 perm   6320 sec   (609 perm/sec)   p_kst 3.303766e-02   p_cons 1.348052e-03   p_joint 3.446753e-04

Joint ci ratio: 1.073485e-01	ci left: 3.267957e-04	ci right 3.641160e-04	k: 1332	n:3860000
Cons ci ratio: 5.430830e-02	ci left: 1.311316e-03	ci right 1.384772e-03	k: 5202	n:3860000
KS ci ratio: 1.079370e-02	ci left: 3.286258e-02	ci right 3.321947e-02	k: 127537	n:3860000
CLEC12B   3860000 perm   6351 sec   (608 perm/sec)   p_kst 3.304067e-02   p_cons 1.347668e-03   p_joint 3.450777e-04

Joint ci ratio: 1.104155e-01	ci left: 3.076016e-04	ci right 3.437989e-04	k: 1259	n:3870000
Cons ci ratio: 5.424058e-02	ci left: 1.311241e-03	ci right 1.384599e-03	k: 5215	n:3870000
KS ci ratio: 1.077867e-02	ci left: 3.286915e-02	ci right 3.322561e-02	k: 127892	n:3870000
CLEC12B   3870000 perm   6382 sec   (606 perm/sec)   p_kst 3.304703e-02   p_cons 1.347545e-03   p_joint 3.253230e-04

Joint ci ratio: 1.103280e-01	ci left: 3.073100e-04	ci right 3.434425e-04	k: 1261	n:3880000
Cons ci ratio: 5.416793e-02	ci left: 1.311421e-03	ci right 1.384687e-03	k: 5229	n:3880000
KS ci ratio: 1.076393e-02	ci left: 3.287440e-02	ci right 3.323042e-02	k: 128242	n:3880000
CLEC12B   3880000 perm   6414 sec   (605 perm/sec)   p_kst 3.305206e-02   p_cons 1.347680e-03   p_joint 3.250000e-04

Joint ci ratio: 1.101535e-01	ci left: 3.075200e-04	ci right 3.436163e-04	k: 1265	n:3890000
Cons ci ratio: 5.410591e-02	ci left: 1.311093e-03	ci right 1.384254e-03	k: 5241	n:3890000
KS ci ratio: 1.074924e-02	ci left: 3.287962e-02	ci right 3.323521e-02	k: 128592	n:3890000
CLEC12B   3890000 perm   6446 sec   (603 perm/sec)   p_kst 3.305707e-02   p_cons 1.347301e-03   p_joint 3.251928e-04

Joint ci ratio: 1.099366e-01	ci left: 3.079782e-04	ci right 3.440525e-04	k: 1270	n:3900000
Cons ci ratio: 5.401322e-02	ci left: 1.312284e-03	ci right 1.385383e-03	k: 5259	n:3900000
KS ci ratio: 1.073672e-02	ci left: 3.287229e-02	ci right 3.322738e-02	k: 128893	n:3900000
CLEC12B   3900000 perm   6477 sec   (602 perm/sec)   p_kst 3.304949e-02   p_cons 1.348462e-03   p_joint 3.256410e-04

Joint ci ratio: 1.098071e-01	ci left: 3.079367e-04	ci right 3.439609e-04	k: 1273	n:3910000
Cons ci ratio: 5.396197e-02	ci left: 1.311451e-03	ci right 1.384432e-03	k: 5269	n:3910000
KS ci ratio: 1.072223e-02	ci left: 3.287698e-02	ci right 3.323164e-02	k: 129241	n:3910000
CLEC12B   3910000 perm   6508 sec   (601 perm/sec)   p_kst 3.305396e-02   p_cons 1.347570e-03   p_joint 3.255754e-04

Joint ci ratio: 1.096781e-01	ci left: 3.078955e-04	ci right 3.438698e-04	k: 1276	n:3920000
Cons ci ratio: 5.388023e-02	ci left: 1.312132e-03	ci right 1.385037e-03	k: 5285	n:3920000
KS ci ratio: 1.070831e-02	ci left: 3.287859e-02	ci right 3.323281e-02	k: 129577	n:3920000
CLEC12B   3920000 perm   6540 sec   (599 perm/sec)   p_kst 3.305536e-02   p_cons 1.348214e-03   p_joint 3.255102e-04

Joint ci ratio: 1.095923e-01	ci left: 3.076070e-04	ci right 3.435176e-04	k: 1278	n:3930000
Cons ci ratio: 5.380393e-02	ci left: 1.312558e-03	ci right 1.385381e-03	k: 5300	n:3930000
KS ci ratio: 1.069696e-02	ci left: 3.286523e-02	ci right 3.321892e-02	k: 129854	n:3930000
CLEC12B   3930000 perm   6573 sec   (598 perm/sec)   p_kst 3.304173e-02   p_cons 1.348601e-03   p_joint 3.251908e-04

Joint ci ratio: 1.210731e-01	ci left: 2.498834e-04	ci right 2.823305e-04	k: 1047	n:3940000
Cons ci ratio: 5.375328e-02	ci left: 1.311731e-03	ci right 1.384437e-03	k: 5310	n:3940000
KS ci ratio: 1.068174e-02	ci left: 3.287522e-02	ci right 3.322851e-02	k: 130223	n:3940000
CLEC12B   3940000 perm   6605 sec   (596 perm/sec)   p_kst 3.305152e-02   p_cons 1.347716e-03   p_joint 2.657360e-04

Joint ci ratio: 1.209002e-01	ci left: 2.499873e-04	ci right 2.823982e-04	k: 1050	n:3950000
Cons ci ratio: 5.370782e-02	ci left: 1.310658e-03	ci right 1.383241e-03	k: 5319	n:3950000
KS ci ratio: 1.066743e-02	ci left: 3.288011e-02	ci right 3.323298e-02	k: 130572	n:3950000
CLEC12B   3950000 perm   6637 sec   (595 perm/sec)   p_kst 3.305620e-02   p_cons 1.346582e-03   p_joint 2.658228e-04

Joint ci ratio: 1.207853e-01	ci left: 2.498458e-04	ci right 2.822054e-04	k: 1052	n:3960000
Cons ci ratio: 5.365240e-02	ci left: 1.310089e-03	ci right 1.382563e-03	k: 5330	n:3960000
KS ci ratio: 1.065385e-02	ci left: 3.288094e-02	ci right 3.323337e-02	k: 130905	n:3960000
CLEC12B   3960000 perm   6668 sec   (594 perm/sec)   p_kst 3.305682e-02   p_cons 1.345960e-03   p_joint 2.656566e-04

Joint ci ratio: 1.087872e-01	ci left: 3.091629e-04	ci right 3.449730e-04	k: 1297	n:3970000
Cons ci ratio: 5.359213e-02	ci left: 1.309771e-03	ci right 1.382143e-03	k: 5342	n:3970000
KS ci ratio: 1.063969e-02	ci left: 3.288555e-02	ci right 3.323755e-02	k: 131253	n:3970000
CLEC12B   3970000 perm   6699 sec   (593 perm/sec)   p_kst 3.306121e-02   p_cons 1.345592e-03   p_joint 3.267003e-04

Joint ci ratio: 1.086617e-01	ci left: 3.091193e-04	ci right 3.448805e-04	k: 1300	n:3980000
Cons ci ratio: 5.350705e-02	ci left: 1.310694e-03	ci right 1.382999e-03	k: 5359	n:3980000
KS ci ratio: 1.062789e-02	ci left: 3.287634e-02	ci right 3.322786e-02	k: 131546	n:3980000
CLEC12B   3980000 perm   6731 sec   (591 perm/sec)   p_kst 3.305176e-02   p_cons 1.346482e-03   p_joint 3.266332e-04

Joint ci ratio: 1.085783e-01	ci left: 3.088322e-04	ci right 3.445310e-04	k: 1302	n:3990000
Cons ci ratio: 5.342237e-02	ci left: 1.311613e-03	ci right 1.383851e-03	k: 5376	n:3990000
KS ci ratio: 1.061658e-02	ci left: 3.286443e-02	ci right 3.321544e-02	k: 131828	n:3990000
CLEC12B   3990000 perm   6764 sec   (590 perm/sec)   p_kst 3.303960e-02   p_cons 1.347368e-03   p_joint 3.263158e-04

Joint ci ratio: 1.085367e-01	ci left: 3.083034e-04	ci right 3.439265e-04	k: 1303	n:4000000
Cons ci ratio: 5.332325e-02	ci left: 1.313267e-03	ci right 1.385458e-03	k: 5396	n:4000000
KS ci ratio: 1.060365e-02	ci left: 3.286256e-02	ci right 3.321312e-02	k: 132150	n:4000000
CLEC12B   4000000 perm   6796 sec   (589 perm/sec)   p_kst 3.303750e-02   p_cons 1.349000e-03   p_joint 3.257500e-04

Joint ci ratio: 1.085367e-01	ci left: 3.075345e-04	ci right 3.430688e-04	k: 1303	n:4010000
Cons ci ratio: 5.325422e-02	ci left: 1.313437e-03	ci right 1.385541e-03	k: 5410	n:4010000
KS ci ratio: 1.059118e-02	ci left: 3.285820e-02	ci right 3.320831e-02	k: 132462	n:4010000
CLEC12B   4010000 perm   6827 sec   (587 perm/sec)   p_kst 3.303292e-02   p_cons 1.349127e-03   p_joint 3.249377e-04

Joint ci ratio: 1.083706e-01	ci left: 3.077375e-04	ci right 3.432374e-04	k: 1307	n:4020000
Cons ci ratio: 5.317074e-02	ci left: 1.314342e-03	ci right 1.386379e-03	k: 5427	n:4020000
KS ci ratio: 1.057802e-02	ci left: 3.285834e-02	ci right 3.320801e-02	k: 132792	n:4020000
CLEC12B   4020000 perm   6860 sec   (586 perm/sec)   p_kst 3.303284e-02   p_cons 1.350000e-03   p_joint 3.251244e-04

Joint ci ratio: 1.082465e-01	ci left: 3.076982e-04	ci right 3.431503e-04	k: 1310	n:4030000
Cons ci ratio: 5.311207e-02	ci left: 1.314019e-03	ci right 1.385956e-03	k: 5439	n:4030000
KS ci ratio: 1.056494e-02	ci left: 3.285823e-02	ci right 3.320746e-02	k: 133121	n:4030000
CLEC12B   4030000 perm   6893 sec   (585 perm/sec)   p_kst 3.303251e-02   p_cons 1.349628e-03   p_joint 3.250620e-04

Joint ci ratio: 1.080407e-01	ci left: 3.081407e-04	ci right 3.435720e-04	k: 1315	n:4040000
Cons ci ratio: 5.303899e-02	ci left: 1.314430e-03	ci right 1.386288e-03	k: 5454	n:4040000
KS ci ratio: 1.055183e-02	ci left: 3.285861e-02	ci right 3.320741e-02	k: 133452	n:4040000
CLEC12B   4040000 perm   6926 sec   (583 perm/sec)   p_kst 3.303267e-02   p_cons 1.350000e-03   p_joint 3.254950e-04

Joint ci ratio: 1.080407e-01	ci left: 3.073799e-04	ci right 3.427237e-04	k: 1315	n:4050000
Cons ci ratio: 5.298561e-02	ci left: 1.313865e-03	ci right 1.385617e-03	k: 5465	n:4050000
KS ci ratio: 1.053815e-02	ci left: 3.286268e-02	ci right 3.321107e-02	k: 133798	n:4050000
CLEC12B   4050000 perm   6958 sec   (582 perm/sec)   p_kst 3.303654e-02   p_cons 1.349383e-03   p_joint 3.246914e-04

Joint ci ratio: 1.079997e-01	ci left: 3.068624e-04	ci right 3.421325e-04	k: 1316	n:4060000
Cons ci ratio: 5.293723e-02	ci left: 1.313059e-03	ci right 1.384700e-03	k: 5475	n:4060000
KS ci ratio: 1.052571e-02	ci left: 3.285961e-02	ci right 3.320755e-02	k: 134115	n:4060000
CLEC12B   4060000 perm   6990 sec   (581 perm/sec)   p_kst 3.303325e-02   p_cons 1.348522e-03   p_joint 3.241379e-04

Joint ci ratio: 1.079178e-01	ci left: 3.065866e-04	ci right 3.417965e-04	k: 1318	n:4070000
Cons ci ratio: 5.286969e-02	ci left: 1.313227e-03	ci right 1.384783e-03	k: 5489	n:4070000
KS ci ratio: 1.051266e-02	ci left: 3.286048e-02	ci right 3.320800e-02	k: 134448	n:4070000
CLEC12B   4070000 perm   7022 sec   (580 perm/sec)   p_kst 3.303391e-02   p_cons 1.348649e-03   p_joint 3.238329e-04

Joint ci ratio: 1.194320e-01	ci left: 2.482031e-04	ci right 2.799642e-04	k: 1076	n:4080000
Cons ci ratio: 5.275922e-02	ci left: 1.315571e-03	ci right 1.387100e-03	k: 5512	n:4080000
KS ci ratio: 1.049951e-02	ci left: 3.286232e-02	ci right 3.320942e-02	k: 134785	n:4080000
CLEC12B   4080000 perm   7056 sec   (578 perm/sec)   p_kst 3.303554e-02   p_cons 1.350980e-03   p_joint 2.637255e-04

Joint ci ratio: 1.193767e-01	ci left: 2.478334e-04	ci right 2.795315e-04	k: 1077	n:4090000
Cons ci ratio: 5.269236e-02	ci left: 1.315733e-03	ci right 1.387177e-03	k: 5526	n:4090000
KS ci ratio: 1.048623e-02	ci left: 3.286513e-02	ci right 3.321182e-02	k: 135126	n:4090000
CLEC12B   4090000 perm   7089 sec   (577 perm/sec)   p_kst 3.303814e-02   p_cons 1.351100e-03   p_joint 2.633252e-04

Joint ci ratio: 1.192109e-01	ci left: 2.479388e-04	ci right 2.796033e-04	k: 1080	n:4100000
Cons ci ratio: 5.262575e-02	ci left: 1.315893e-03	ci right 1.387253e-03	k: 5540	n:4100000
KS ci ratio: 1.047293e-02	ci left: 3.286841e-02	ci right 3.321469e-02	k: 135469	n:4100000
CLEC12B   4100000 perm   7121 sec   (576 perm/sec)   p_kst 3.304122e-02   p_cons 1.351220e-03   p_joint 2.634146e-04

Joint ci ratio: 1.073496e-01	ci left: 3.069174e-04	ci right 3.419680e-04	k: 1332	n:4110000
Cons ci ratio: 5.256886e-02	ci left: 1.315573e-03	ci right 1.386836e-03	k: 5552	n:4110000
KS ci ratio: 1.046136e-02	ci left: 3.286148e-02	ci right 3.320730e-02	k: 135770	n:4110000
CLEC12B   4110000 perm   7153 sec   (575 perm/sec)   p_kst 3.303406e-02   p_cons 1.350852e-03   p_joint 3.240876e-04

Joint ci ratio: 1.188267e-01	ci left: 2.483837e-04	ci right 2.799955e-04	k: 1087	n:4120000
Cons ci ratio: 5.250744e-02	ci left: 1.315493e-03	ci right 1.386667e-03	k: 5565	n:4120000
KS ci ratio: 1.044819e-02	ci left: 3.286451e-02	ci right 3.320993e-02	k: 136112	n:4120000
CLEC12B   4120000 perm   7187 sec   (573 perm/sec)   p_kst 3.303689e-02   p_cons 1.350728e-03   p_joint 2.638350e-04

Joint ci ratio: 1.186633e-01	ci left: 2.484871e-04	ci right 2.800656e-04	k: 1090	n:4130000
Cons ci ratio: 5.244623e-02	ci left: 1.315415e-03	ci right 1.386498e-03	k: 5578	n:4130000
KS ci ratio: 1.043634e-02	ci left: 3.285980e-02	ci right 3.320477e-02	k: 136422	n:4130000
CLEC12B   4130000 perm   7220 sec   (572 perm/sec)   p_kst 3.303196e-02   p_cons 1.350605e-03   p_joint 2.639225e-04

Joint ci ratio: 1.185547e-01	ci left: 2.483556e-04	ci right 2.798865e-04	k: 1092	n:4140000
Cons ci ratio: 5.237586e-02	ci left: 1.315813e-03	ci right 1.386820e-03	k: 5593	n:4140000
KS ci ratio: 1.042504e-02	ci left: 3.285198e-02	ci right 3.319650e-02	k: 136719	n:4140000
CLEC12B   4140000 perm   7252 sec   (571 perm/sec)   p_kst 3.302391e-02   p_cons 1.350966e-03   p_joint 2.637681e-04

Joint ci ratio: 1.183923e-01	ci left: 2.484586e-04	ci right 2.799564e-04	k: 1095	n:4150000
Cons ci ratio: 5.230577e-02	ci left: 1.316210e-03	ci right 1.387140e-03	k: 5608	n:4150000
KS ci ratio: 1.041288e-02	ci left: 3.284973e-02	ci right 3.319381e-02	k: 137039	n:4150000
CLEC12B   4150000 perm   7285 sec   (570 perm/sec)   p_kst 3.302145e-02   p_cons 1.351325e-03   p_joint 2.638554e-04

Joint ci ratio: 1.182306e-01	ci left: 2.485612e-04	ci right 2.800259e-04	k: 1098	n:4160000
Cons ci ratio: 5.225457e-02	ci left: 1.315655e-03	ci right 1.386484e-03	k: 5619	n:4160000
KS ci ratio: 1.040056e-02	ci left: 3.284869e-02	ci right 3.319235e-02	k: 137364	n:4160000
CLEC12B   4160000 perm   7319 sec   (568 perm/sec)   p_kst 3.302019e-02   p_cons 1.350721e-03   p_joint 2.639423e-04

Joint ci ratio: 1.180695e-01	ci left: 2.486633e-04	ci right 2.800950e-04	k: 1101	n:4170000
Cons ci ratio: 5.220817e-02	ci left: 1.314867e-03	ci right 1.385589e-03	k: 5629	n:4170000
KS ci ratio: 1.038692e-02	ci left: 3.285602e-02	ci right 3.319931e-02	k: 137724	n:4170000
CLEC12B   4170000 perm   7352 sec   (567 perm/sec)   p_kst 3.302734e-02   p_cons 1.349880e-03   p_joint 2.640288e-04

Joint ci ratio: 1.179091e-01	ci left: 2.487649e-04	ci right 2.801638e-04	k: 1104	n:4180000
Cons ci ratio: 5.214337e-02	ci left: 1.315027e-03	ci right 1.385667e-03	k: 5643	n:4180000
KS ci ratio: 1.037605e-02	ci left: 3.284661e-02	ci right 3.318944e-02	k: 138014	n:4180000
CLEC12B   4180000 perm   7386 sec   (566 perm/sec)   p_kst 3.301770e-02   p_cons 1.350000e-03   p_joint 2.641148e-04

Joint ci ratio: 1.178026e-01	ci left: 2.486345e-04	ci right 2.799866e-04	k: 1106	n:4190000
Cons ci ratio: 5.206960e-02	ci left: 1.315657e-03	ci right 1.386228e-03	k: 5659	n:4190000
KS ci ratio: 1.036398e-02	ci left: 3.284487e-02	ci right 3.318728e-02	k: 138336	n:4190000
CLEC12B   4190000 perm   7421 sec   (565 perm/sec)   p_kst 3.301575e-02   p_cons 1.350597e-03   p_joint 2.639618e-04

Joint ci ratio: 1.178026e-01	ci left: 2.480425e-04	ci right 2.793199e-04	k: 1106	n:4200000
Cons ci ratio: 5.202369e-02	ci left: 1.314875e-03	ci right 1.385339e-03	k: 5669	n:4200000
KS ci ratio: 1.035114e-02	ci left: 3.284812e-02	ci right 3.319014e-02	k: 138679	n:4200000
CLEC12B   4200000 perm   7455 sec   (563 perm/sec)   p_kst 3.301881e-02   p_cons 1.349762e-03   p_joint 2.633333e-04

Joint ci ratio: 1.176433e-01	ci left: 2.481449e-04	ci right 2.793900e-04	k: 1109	n:4210000
Cons ci ratio: 5.196873e-02	ci left: 1.314565e-03	ci right 1.384936e-03	k: 5681	n:4210000
KS ci ratio: 1.033954e-02	ci left: 3.284402e-02	ci right 3.318560e-02	k: 138991	n:4210000
CLEC12B   4210000 perm   7489 sec   (562 perm/sec)   p_kst 3.301449e-02   p_cons 1.349406e-03   p_joint 2.634204e-04

Joint ci ratio: 1.174847e-01	ci left: 2.482469e-04	ci right 2.794598e-04	k: 1112	n:4220000
Cons ci ratio: 5.191852e-02	ci left: 1.314023e-03	ci right 1.384295e-03	k: 5692	n:4220000
KS ci ratio: 1.032725e-02	ci left: 3.284442e-02	ci right 3.318560e-02	k: 139322	n:4220000
CLEC12B   4220000 perm   7523 sec   (561 perm/sec)   p_kst 3.301469e-02   p_cons 1.348815e-03   p_joint 2.635071e-04

Joint ci ratio: 1.173266e-01	ci left: 2.483484e-04	ci right 2.795291e-04	k: 1115	n:4230000
Cons ci ratio: 5.184570e-02	ci left: 1.314650e-03	ci right 1.384854e-03	k: 5708	n:4230000
KS ci ratio: 1.031641e-02	ci left: 3.283610e-02	ci right 3.317683e-02	k: 139616	n:4230000
CLEC12B   4230000 perm   7557 sec   (560 perm/sec)   p_kst 3.300615e-02   p_cons 1.349409e-03   p_joint 2.635934e-04

Joint ci ratio: 1.171693e-01	ci left: 2.484495e-04	ci right 2.795982e-04	k: 1118	n:4240000
Cons ci ratio: 5.182306e-02	ci left: 1.312713e-03	ci right 1.382782e-03	k: 5713	n:4240000
KS ci ratio: 1.030424e-02	ci left: 3.283628e-02	ci right 3.317662e-02	k: 139946	n:4240000
CLEC12B   4240000 perm   7592 sec   (558 perm/sec)   p_kst 3.300613e-02   p_cons 1.347406e-03   p_joint 2.636792e-04

Joint ci ratio: 1.171693e-01	ci left: 2.478649e-04	ci right 2.789403e-04	k: 1118	n:4250000
Cons ci ratio: 5.175516e-02	ci left: 1.313108e-03	ci right 1.383104e-03	k: 5728	n:4250000
KS ci ratio: 1.029155e-02	ci left: 3.283999e-02	ci right 3.317994e-02	k: 140291	n:4250000
CLEC12B   4250000 perm   7627 sec   (557 perm/sec)   p_kst 3.300965e-02   p_cons 1.347765e-03   p_joint 2.630588e-04

Joint ci ratio: 1.170125e-01	ci left: 2.479666e-04	ci right 2.790103e-04	k: 1121	n:4260000
Cons ci ratio: 5.172361e-02	ci left: 1.311647e-03	ci right 1.381521e-03	k: 5735	n:4260000
KS ci ratio: 1.027988e-02	ci left: 3.283759e-02	ci right 3.317713e-02	k: 140610	n:4260000
CLEC12B   4260000 perm   7662 sec   (556 perm/sec)   p_kst 3.300704e-02   p_cons 1.346244e-03   p_joint 2.631455e-04

Joint ci ratio: 1.170126e-01	ci left: 2.473859e-04	ci right 2.783569e-04	k: 1121	n:4270000
Cons ci ratio: 5.165611e-02	ci left: 1.312043e-03	ci right 1.381844e-03	k: 5750	n:4270000
KS ci ratio: 1.026674e-02	ci left: 3.284455e-02	ci right 3.318372e-02	k: 140969	n:4270000
CLEC12B   4270000 perm   7696 sec   (555 perm/sec)   p_kst 3.301382e-02   p_cons 1.346604e-03   p_joint 2.625293e-04

Joint ci ratio: 1.169084e-01	ci left: 2.472615e-04	ci right 2.781875e-04	k: 1123	n:4280000
Cons ci ratio: 5.158438e-02	ci left: 1.312668e-03	ci right 1.382402e-03	k: 5766	n:4280000
KS ci ratio: 1.025497e-02	ci left: 3.284331e-02	ci right 3.318208e-02	k: 141293	n:4280000
CLEC12B   4280000 perm   7730 sec   (554 perm/sec)   p_kst 3.301238e-02   p_cons 1.347196e-03   p_joint 2.623832e-04

Joint ci ratio: 1.168565e-01	ci left: 2.469115e-04	ci right 2.777790e-04	k: 1124	n:4290000
Cons ci ratio: 5.151742e-02	ci left: 1.313059e-03	ci right 1.382721e-03	k: 5781	n:4290000
KS ci ratio: 1.024287e-02	ci left: 3.284441e-02	ci right 3.318279e-02	k: 141627	n:4290000
CLEC12B   4290000 perm   7765 sec   (552 perm/sec)   p_kst 3.301329e-02   p_cons 1.347552e-03   p_joint 2.620047e-04

Joint ci ratio: 1.168565e-01	ci left: 2.463372e-04	ci right 2.771330e-04	k: 1124	n:4300000
Cons ci ratio: 5.148185e-02	ci left: 1.311842e-03	ci right 1.381390e-03	k: 5789	n:4300000
KS ci ratio: 1.023066e-02	ci left: 3.284643e-02	ci right 3.318443e-02	k: 141965	n:4300000
CLEC12B   4300000 perm   7799 sec   (551 perm/sec)   p_kst 3.301512e-02   p_cons 1.346279e-03   p_joint 2.613953e-04

Joint ci ratio: 1.168046e-01	ci left: 2.459909e-04	ci right 2.767288e-04	k: 1125	n:4310000
Cons ci ratio: 5.141972e-02	ci left: 1.312005e-03	ci right 1.381475e-03	k: 5803	n:4310000
KS ci ratio: 1.022016e-02	ci left: 3.283803e-02	ci right 3.317559e-02	k: 142258	n:4310000
CLEC12B   4310000 perm   7834 sec   (550 perm/sec)   p_kst 3.300650e-02   p_cons 1.346404e-03   p_joint 2.610209e-04

Joint ci ratio: 1.168047e-01	ci left: 2.454215e-04	ci right 2.760882e-04	k: 1125	n:4320000
Cons ci ratio: 5.137108e-02	ci left: 1.311481e-03	ci right 1.380856e-03	k: 5814	n:4320000
KS ci ratio: 1.020829e-02	ci left: 3.283844e-02	ci right 3.317561e-02	k: 142589	n:4320000
CLEC12B   4320000 perm   7869 sec   (549 perm/sec)   p_kst 3.300671e-02   p_cons 1.345833e-03   p_joint 2.604167e-04

Joint ci ratio: 1.167011e-01	ci left: 2.453031e-04	ci right 2.759260e-04	k: 1127	n:4330000
Cons ci ratio: 5.132257e-02	ci left: 1.310960e-03	ci right 1.380240e-03	k: 5825	n:4330000
KS ci ratio: 1.019717e-02	ci left: 3.283447e-02	ci right 3.317123e-02	k: 142901	n:4330000
CLEC12B   4330000 perm   7904 sec   (548 perm/sec)   p_kst 3.300254e-02   p_cons 1.345266e-03   p_joint 2.602771e-04

Joint ci ratio: 1.165978e-01	ci left: 2.451853e-04	ci right 2.757645e-04	k: 1129	n:4340000
Cons ci ratio: 5.125662e-02	ci left: 1.311352e-03	ci right 1.380561e-03	k: 5840	n:4340000
KS ci ratio: 1.018527e-02	ci left: 3.283558e-02	ci right 3.317196e-02	k: 143235	n:4340000
CLEC12B   4340000 perm   7940 sec   (547 perm/sec)   p_kst 3.300346e-02   p_cons 1.345622e-03   p_joint 2.601382e-04

Joint ci ratio: 1.164947e-01	ci left: 2.450680e-04	ci right 2.756037e-04	k: 1131	n:4350000
Cons ci ratio: 5.116905e-02	ci left: 1.312876e-03	ci right 1.382043e-03	k: 5860	n:4350000
KS ci ratio: 1.017337e-02	ci left: 3.283691e-02	ci right 3.317291e-02	k: 143570	n:4350000
CLEC12B   4350000 perm   7976 sec   (545 perm/sec)   p_kst 3.300460e-02   p_cons 1.347126e-03   p_joint 2.600000e-04

Joint ci ratio: 1.162894e-01	ci left: 2.453966e-04	ci right 2.759157e-04	k: 1135	n:4360000
Cons ci ratio: 5.108193e-02	ci left: 1.314393e-03	ci right 1.383519e-03	k: 5880	n:4360000
KS ci ratio: 1.016100e-02	ci left: 3.284144e-02	ci right 3.317707e-02	k: 143919	n:4360000
CLEC12B   4360000 perm   8012 sec   (544 perm/sec)   p_kst 3.300894e-02   p_cons 1.348624e-03   p_joint 2.603211e-04

Joint ci ratio: 1.162383e-01	ci left: 2.450573e-04	ci right 2.755198e-04	k: 1136	n:4370000
Cons ci ratio: 5.100391e-02	ci left: 1.315452e-03	ci right 1.384525e-03	k: 5898	n:4370000
KS ci ratio: 1.014927e-02	ci left: 3.284230e-02	ci right 3.317754e-02	k: 144252	n:4370000
CLEC12B   4370000 perm   8046 sec   (543 perm/sec)   p_kst 3.300961e-02   p_cons 1.349657e-03   p_joint 2.599542e-04

Joint ci ratio: 1.160853e-01	ci left: 2.451628e-04	ci right 2.755956e-04	k: 1139	n:4380000
Cons ci ratio: 5.096076e-02	ci left: 1.314703e-03	ci right 1.383676e-03	k: 5908	n:4380000
KS ci ratio: 1.013855e-02	ci left: 3.283700e-02	ci right 3.317184e-02	k: 144558	n:4380000
CLEC12B   4380000 perm   8081 sec   (542 perm/sec)   p_kst 3.300411e-02   p_cons 1.348858e-03   p_joint 2.600457e-04

Joint ci ratio: 1.159836e-01	ci left: 2.450467e-04	ci right 2.754366e-04	k: 1141	n:4390000
Cons ci ratio: 5.089619e-02	ci left: 1.315081e-03	ci right 1.383985e-03	k: 5923	n:4390000
KS ci ratio: 1.012732e-02	ci left: 3.283514e-02	ci right 3.316958e-02	k: 144879	n:4390000
CLEC12B   4390000 perm   8117 sec   (541 perm/sec)   p_kst 3.300205e-02   p_cons 1.349203e-03   p_joint 2.599089e-04

Joint ci ratio: 1.159836e-01	ci left: 2.444898e-04	ci right 2.748106e-04	k: 1141	n:4400000
Cons ci ratio: 5.086618e-02	ci left: 1.313663e-03	ci right 1.382450e-03	k: 5930	n:4400000
KS ci ratio: 1.011584e-02	ci left: 3.283509e-02	ci right 3.316916e-02	k: 145208	n:4400000
CLEC12B   4400000 perm   8152 sec   (540 perm/sec)   p_kst 3.300182e-02   p_cons 1.347727e-03   p_joint 2.593182e-04

Joint ci ratio: 1.158822e-01	ci left: 2.443757e-04	ci right 2.746541e-04	k: 1143	n:4410000
Cons ci ratio: 5.080625e-02	ci left: 1.313818e-03	ci right 1.382531e-03	k: 5944	n:4410000
KS ci ratio: 1.010519e-02	ci left: 3.283008e-02	ci right 3.316373e-02	k: 145515	n:4410000
CLEC12B   4410000 perm   8188 sec   (539 perm/sec)   p_kst 3.299660e-02   p_cons 1.347846e-03   p_joint 2.591837e-04

Joint ci ratio: 1.156801e-01	ci left: 2.447016e-04	ci right 2.749639e-04	k: 1147	n:4420000
Cons ci ratio: 5.073801e-02	ci left: 1.314420e-03	ci right 1.383069e-03	k: 5960	n:4420000
KS ci ratio: 1.009397e-02	ci left: 3.282892e-02	ci right 3.316219e-02	k: 145839	n:4420000
CLEC12B   4420000 perm   8223 sec   (538 perm/sec)   p_kst 3.299525e-02   p_cons 1.348416e-03   p_joint 2.595023e-04

Joint ci ratio: 1.156298e-01	ci left: 2.443685e-04	ci right 2.745755e-04	k: 1148	n:4430000
Cons ci ratio: 5.069977e-02	ci left: 1.313459e-03	ci right 1.382004e-03	k: 5969	n:4430000
KS ci ratio: 1.008178e-02	ci left: 3.283407e-02	ci right 3.316699e-02	k: 146191	n:4430000
CLEC12B   4430000 perm   8259 sec   (536 perm/sec)   p_kst 3.300023e-02   p_cons 1.347404e-03   p_joint 2.591422e-04

Joint ci ratio: 1.154791e-01	ci left: 2.444742e-04	ci right 2.746523e-04	k: 1151	n:4440000
Cons ci ratio: 5.066587e-02	ci left: 1.312279e-03	ci right 1.380716e-03	k: 5977	n:4440000
KS ci ratio: 1.007181e-02	ci left: 3.282549e-02	ci right 3.315800e-02	k: 146482	n:4440000
CLEC12B   4440000 perm   8295 sec   (535 perm/sec)   p_kst 3.299144e-02   p_cons 1.346171e-03   p_joint 2.592342e-04

Joint ci ratio: 1.153790e-01	ci left: 2.443613e-04	ci right 2.744975e-04	k: 1153	n:4450000
Cons ci ratio: 5.063627e-02	ci left: 1.310884e-03	ci right 1.379206e-03	k: 5984	n:4450000
KS ci ratio: 1.006126e-02	ci left: 3.282077e-02	ci right 3.315287e-02	k: 146790	n:4450000
CLEC12B   4450000 perm   8331 sec   (534 perm/sec)   p_kst 3.298652e-02   p_cons 1.344719e-03   p_joint 2.591011e-04

Joint ci ratio: 1.153790e-01	ci left: 2.438134e-04	ci right 2.738820e-04	k: 1153	n:4460000
Cons ci ratio: 5.058559e-02	ci left: 1.310601e-03	ci right 1.378838e-03	k: 5996	n:4460000
KS ci ratio: 1.005008e-02	ci left: 3.282031e-02	ci right 3.315204e-02	k: 147117	n:4460000
CLEC12B   4460000 perm   8367 sec   (533 perm/sec)   p_kst 3.298587e-02   p_cons 1.344395e-03   p_joint 2.585202e-04

Joint ci ratio: 1.153291e-01	ci left: 2.434852e-04	ci right 2.734995e-04	k: 1154	n:4470000
Cons ci ratio: 5.053506e-02	ci left: 1.310320e-03	ci right 1.378472e-03	k: 6008	n:4470000
KS ci ratio: 1.003971e-02	ci left: 3.281495e-02	ci right 3.314628e-02	k: 147422	n:4470000
CLEC12B   4470000 perm   8403 sec   (532 perm/sec)   p_kst 3.298031e-02   p_cons 1.344072e-03   p_joint 2.581655e-04

Joint ci ratio: 1.152294e-01	ci left: 2.433753e-04	ci right 2.733483e-04	k: 1156	n:4480000
Cons ci ratio: 5.047210e-02	ci left: 1.310701e-03	ci right 1.378786e-03	k: 6023	n:4480000
KS ci ratio: 1.002916e-02	ci left: 3.281095e-02	ci right 3.314189e-02	k: 147733	n:4480000
CLEC12B   4480000 perm   8438 sec   (531 perm/sec)   p_kst 3.297612e-02   p_cons 1.344420e-03   p_joint 2.580357e-04

Joint ci ratio: 1.151299e-01	ci left: 2.432658e-04	ci right 2.731977e-04	k: 1158	n:4490000
Cons ci ratio: 5.043446e-02	ci left: 1.309761e-03	ci right 1.377745e-03	k: 6032	n:4490000
KS ci ratio: 1.001689e-02	ci left: 3.281807e-02	ci right 3.314868e-02	k: 148094	n:4490000
CLEC12B   4490000 perm   8474 sec   (530 perm/sec)   p_kst 3.298307e-02   p_cons 1.343430e-03   p_joint 2.579065e-04

Joint ci ratio: 1.149318e-01	ci left: 2.435886e-04	ci right 2.735051e-04	k: 1162	n:4500000
Cons ci ratio: 5.036770e-02	ci left: 1.310361e-03	ci right 1.378283e-03	k: 6048	n:4500000
KS ci ratio: 1.000564e-02	ci left: 3.281896e-02	ci right 3.314920e-02	k: 148427	n:4500000
CLEC12B   4500000 perm   8510 sec   (529 perm/sec)   p_kst 3.298378e-02   p_cons 1.344000e-03   p_joint 2.582222e-04

Joint ci ratio: 1.148331e-01	ci left: 2.434792e-04	ci right 2.733548e-04	k: 1164	n:4510000
Cons ci ratio: 5.030536e-02	ci left: 1.310739e-03	ci right 1.378595e-03	k: 6063	n:4510000
KS ci ratio: 9.994815e-03	ci left: 3.281741e-02	ci right 3.314727e-02	k: 148749	n:4510000
CLEC12B   4510000 perm   8546 sec   (528 perm/sec)   p_kst 3.298204e-02   p_cons 1.344346e-03   p_joint 2.580931e-04

Joint ci ratio: 1.147346e-01	ci left: 2.433703e-04	ci right 2.732052e-04	k: 1166	n:4520000
Cons ci ratio: 5.025153e-02	ci left: 1.310680e-03	ci right 1.378457e-03	k: 6076	n:4520000
KS ci ratio: 9.984335e-03	ci left: 3.281388e-02	ci right 3.314336e-02	k: 149062	n:4520000
CLEC12B   4520000 perm   8583 sec   (527 perm/sec)   p_kst 3.297832e-02   p_cons 1.344248e-03   p_joint 2.579646e-04

Joint ci ratio: 1.146364e-01	ci left: 2.432619e-04	ci right 2.730563e-04	k: 1168	n:4530000
Cons ci ratio: 5.020199e-02	ci left: 1.310402e-03	ci right 1.378097e-03	k: 6088	n:4530000
KS ci ratio: 9.973681e-03	ci left: 3.281168e-02	ci right 3.314079e-02	k: 149381	n:4530000
CLEC12B   4530000 perm   8620 sec   (526 perm/sec)   p_kst 3.297594e-02   p_cons 1.343929e-03   p_joint 2.578366e-04

Joint ci ratio: 1.146365e-01	ci left: 2.427260e-04	ci right 2.724549e-04	k: 1168	n:4540000
Cons ci ratio: 5.016084e-02	ci left: 1.309691e-03	ci right 1.377292e-03	k: 6098	n:4540000
KS ci ratio: 9.962683e-03	ci left: 3.281192e-02	ci right 3.314066e-02	k: 149711	n:4540000
CLEC12B   4540000 perm   8658 sec   (524 perm/sec)   p_kst 3.297599e-02   p_cons 1.343172e-03   p_joint 2.572687e-04

Joint ci ratio: 1.145875e-01	ci left: 2.424061e-04	ci right 2.720821e-04	k: 1169	n:4550000
Cons ci ratio: 5.009926e-02	ci left: 1.310068e-03	ci right 1.377603e-03	k: 6113	n:4550000
KS ci ratio: 9.952303e-03	ci left: 3.280842e-02	ci right 3.313679e-02	k: 150024	n:4550000
CLEC12B   4550000 perm   8694 sec   (523 perm/sec)   p_kst 3.297231e-02   p_cons 1.343516e-03   p_joint 2.569231e-04

Joint ci ratio: 1.144897e-01	ci left: 2.423005e-04	ci right 2.719366e-04	k: 1171	n:4560000
Cons ci ratio: 5.005018e-02	ci left: 1.309793e-03	ci right 1.377246e-03	k: 6125	n:4560000
KS ci ratio: 9.940760e-03	ci left: 3.281260e-02	ci right 3.314062e-02	k: 150372	n:4560000
CLEC12B   4560000 perm   8731 sec   (522 perm/sec)   p_kst 3.297632e-02   p_cons 1.343202e-03   p_joint 2.567982e-04

Joint ci ratio: 1.143921e-01	ci left: 2.421954e-04	ci right 2.717917e-04	k: 1173	n:4570000
Cons ci ratio: 4.998493e-02	ci left: 1.310384e-03	ci right 1.377777e-03	k: 6141	n:4570000
KS ci ratio: 9.929836e-03	ci left: 3.281305e-02	ci right 3.314072e-02	k: 150703	n:4570000
CLEC12B   4570000 perm   8768 sec   (521 perm/sec)   p_kst 3.297659e-02   p_cons 1.343764e-03   p_joint 2.566740e-04

Joint ci ratio: 1.142463e-01	ci left: 2.423029e-04	ci right 2.718721e-04	k: 1176	n:4580000
Cons ci ratio: 4.991588e-02	ci left: 1.311189e-03	ci right 1.378527e-03	k: 6158	n:4580000
KS ci ratio: 9.920103e-03	ci left: 3.280609e-02	ci right 3.313336e-02	k: 151000	n:4580000
CLEC12B   4580000 perm   8805 sec   (520 perm/sec)   p_kst 3.296943e-02   p_cons 1.344541e-03   p_joint 2.567686e-04

Joint ci ratio: 1.142463e-01	ci left: 2.417750e-04	ci right 2.712797e-04	k: 1176	n:4590000
Cons ci ratio: 4.987138e-02	ci left: 1.310699e-03	ci right 1.377950e-03	k: 6169	n:4590000
KS ci ratio: 9.909179e-03	ci left: 3.280699e-02	ci right 3.313391e-02	k: 151333	n:4590000
CLEC12B   4590000 perm   8843 sec   (519 perm/sec)   p_kst 3.297015e-02   p_cons 1.344009e-03   p_joint 2.562092e-04

Joint ci ratio: 1.140044e-01	ci left: 2.423053e-04	ci right 2.718080e-04	k: 1181	n:4600000
Cons ci ratio: 4.983910e-02	ci left: 1.309567e-03	ci right 1.376715e-03	k: 6177	n:4600000
KS ci ratio: 9.898932e-03	ci left: 3.280376e-02	ci right 3.313031e-02	k: 151647	n:4600000
CLEC12B   4600000 perm   8880 sec   (518 perm/sec)   p_kst 3.296674e-02   p_cons 1.342826e-03   p_joint 2.567391e-04

Joint ci ratio: 1.140044e-01	ci left: 2.417797e-04	ci right 2.712184e-04	k: 1181	n:4610000
Cons ci ratio: 4.977870e-02	ci left: 1.309939e-03	ci right 1.377023e-03	k: 6192	n:4610000
KS ci ratio: 9.889087e-03	ci left: 3.279816e-02	ci right 3.312433e-02	k: 151950	n:4610000
CLEC12B   4610000 perm   8918 sec   (517 perm/sec)   p_kst 3.296095e-02   p_cons 1.343167e-03   p_joint 2.561822e-04

Joint ci ratio: 1.140044e-01	ci left: 2.412564e-04	ci right 2.706313e-04	k: 1181	n:4620000
Cons ci ratio: 4.973055e-02	ci left: 1.309669e-03	ci right 1.376673e-03	k: 6204	n:4620000
KS ci ratio: 9.879137e-03	ci left: 3.279346e-02	ci right 3.311925e-02	k: 152257	n:4620000
CLEC12B   4620000 perm   8956 sec   (516 perm/sec)   p_kst 3.295606e-02   p_cons 1.342857e-03   p_joint 2.556277e-04

Joint ci ratio: 1.137640e-01	ci left: 2.417845e-04	ci right 2.711575e-04	k: 1186	n:4630000
Cons ci ratio: 4.967454e-02	ci left: 1.309827e-03	ci right 1.376761e-03	k: 6218	n:4630000
KS ci ratio: 9.867980e-03	ci left: 3.279675e-02	ci right 3.312220e-02	k: 152601	n:4630000
CLEC12B   4630000 perm   8994 sec   (515 perm/sec)   p_kst 3.295918e-02   p_cons 1.342981e-03   p_joint 2.561555e-04

Joint ci ratio: 1.136205e-01	ci left: 2.418915e-04	ci right 2.712380e-04	k: 1189	n:4640000
Cons ci ratio: 4.962271e-02	ci left: 1.309771e-03	ci right 1.376630e-03	k: 6231	n:4640000
KS ci ratio: 9.857161e-03	ci left: 3.279808e-02	ci right 3.312319e-02	k: 152936	n:4640000
CLEC12B   4640000 perm   9031 sec   (514 perm/sec)   p_kst 3.296034e-02   p_cons 1.342888e-03   p_joint 2.562500e-04

Joint ci ratio: 1.133826e-01	ci left: 2.424161e-04	ci right 2.717605e-04	k: 1194	n:4650000
Cons ci ratio: 4.954721e-02	ci left: 1.310989e-03	ci right 1.377806e-03	k: 6250	n:4650000
KS ci ratio: 9.846676e-03	ci left: 3.279748e-02	ci right 3.312224e-02	k: 153262	n:4650000
CLEC12B   4650000 perm   9069 sec   (513 perm/sec)   p_kst 3.295957e-02   p_cons 1.344086e-03   p_joint 2.567742e-04

Joint ci ratio: 1.133352e-01	ci left: 2.421044e-04	ci right 2.713980e-04	k: 1195	n:4660000
Cons ci ratio: 4.947205e-02	ci left: 1.312203e-03	ci right 1.378977e-03	k: 6269	n:4660000
KS ci ratio: 9.835959e-03	ci left: 3.279860e-02	ci right 3.312301e-02	k: 153596	n:4660000
CLEC12B   4660000 perm   9106 sec   (512 perm/sec)   p_kst 3.296052e-02   p_cons 1.345279e-03   p_joint 2.564378e-04

Joint ci ratio: 1.132878e-01	ci left: 2.417940e-04	ci right 2.710370e-04	k: 1196	n:4670000
Cons ci ratio: 4.939330e-02	ci left: 1.313623e-03	ci right 1.380360e-03	k: 6289	n:4670000
KS ci ratio: 9.826070e-03	ci left: 3.279459e-02	ci right 3.311863e-02	k: 153906	n:4670000
CLEC12B   4670000 perm   9144 sec   (511 perm/sec)   p_kst 3.295632e-02   p_cons 1.346681e-03   p_joint 2.561028e-04

Joint ci ratio: 1.130049e-01	ci left: 2.425232e-04	ci right 2.717762e-04	k: 1202	n:4680000
Cons ci ratio: 4.932667e-02	ci left: 1.314404e-03	ci right 1.381088e-03	k: 6306	n:4680000
KS ci ratio: 9.815157e-03	ci left: 3.279741e-02	ci right 3.312112e-02	k: 154248	n:4680000
CLEC12B   4680000 perm   9182 sec   (510 perm/sec)   p_kst 3.295897e-02   p_cons 1.347436e-03   p_joint 2.568376e-04

Joint ci ratio: 1.128643e-01	ci left: 2.426276e-04	ci right 2.718544e-04	k: 1205	n:4690000
Cons ci ratio: 4.927982e-02	ci left: 1.314128e-03	ci right 1.380733e-03	k: 6318	n:4690000
KS ci ratio: 9.804904e-03	ci left: 3.279618e-02	ci right 3.311953e-02	k: 154571	n:4690000
CLEC12B   4690000 perm   9220 sec   (509 perm/sec)   p_kst 3.295757e-02   p_cons 1.347122e-03   p_joint 2.569296e-04

Joint ci ratio: 1.127242e-01	ci left: 2.427317e-04	ci right 2.719323e-04	k: 1208	n:4700000
Cons ci ratio: 4.922142e-02	ci left: 1.314484e-03	ci right 1.381026e-03	k: 6333	n:4700000
KS ci ratio: 9.794290e-03	ci left: 3.279750e-02	ci right 3.312052e-02	k: 154906	n:4700000
CLEC12B   4700000 perm   9258 sec   (508 perm/sec)   p_kst 3.295872e-02   p_cons 1.347447e-03   p_joint 2.570213e-04

Joint ci ratio: 1.124918e-01	ci left: 2.432480e-04	ci right 2.724464e-04	k: 1213	n:4710000
Cons ci ratio: 4.915936e-02	ci left: 1.315049e-03	ci right 1.381533e-03	k: 6349	n:4710000
KS ci ratio: 9.782766e-03	ci left: 3.280496e-02	ci right 3.312767e-02	k: 155270	n:4710000
CLEC12B   4710000 perm   9295 sec   (507 perm/sec)   p_kst 3.296603e-02   p_cons 1.347983e-03   p_joint 2.575372e-04

Joint ci ratio: 1.121229e-01	ci left: 2.443800e-04	ci right 2.736117e-04	k: 1221	n:4720000
Cons ci ratio: 4.909753e-02	ci left: 1.315611e-03	ci right 1.382037e-03	k: 6365	n:4720000
KS ci ratio: 9.772809e-03	ci left: 3.280246e-02	ci right 3.312481e-02	k: 155587	n:4720000
CLEC12B   4720000 perm   9333 sec   (506 perm/sec)   p_kst 3.296335e-02   p_cons 1.348517e-03   p_joint 2.586864e-04

Joint ci ratio: 1.120312e-01	ci left: 2.442743e-04	ci right 2.734679e-04	k: 1223	n:4730000
Cons ci ratio: 4.905903e-02	ci left: 1.314918e-03	ci right 1.381255e-03	k: 6375	n:4730000
KS ci ratio: 9.762266e-03	ci left: 3.280397e-02	ci right 3.312599e-02	k: 155923	n:4730000
CLEC12B   4730000 perm   9372 sec   (505 perm/sec)   p_kst 3.296469e-02   p_cons 1.347780e-03   p_joint 2.585624e-04

Joint ci ratio: 1.118942e-01	ci left: 2.443741e-04	ci right 2.735416e-04	k: 1226	n:4740000
Cons ci ratio: 4.900910e-02	ci left: 1.314853e-03	ci right 1.381118e-03	k: 6388	n:4740000
KS ci ratio: 9.751371e-03	ci left: 3.280800e-02	ci right 3.312970e-02	k: 156271	n:4740000
CLEC12B   4740000 perm   9410 sec   (504 perm/sec)   p_kst 3.296857e-02   p_cons 1.347679e-03   p_joint 2.586498e-04

Joint ci ratio: 1.118486e-01	ci left: 2.440643e-04	ci right 2.731822e-04	k: 1227	n:4750000
Cons ci ratio: 4.895166e-02	ci left: 1.315204e-03	ci right 1.381407e-03	k: 6403	n:4750000
KS ci ratio: 9.741123e-03	ci left: 3.280803e-02	ci right 3.312938e-02	k: 156600	n:4750000
CLEC12B   4750000 perm   9448 sec   (503 perm/sec)   p_kst 3.296842e-02   p_cons 1.348000e-03   p_joint 2.583158e-04

Joint ci ratio: 1.116669e-01	ci left: 2.443684e-04	ci right 2.734721e-04	k: 1231	n:4760000
Cons ci ratio: 4.888680e-02	ci left: 1.315968e-03	ci right 1.382120e-03	k: 6420	n:4760000
KS ci ratio: 9.730138e-03	ci left: 3.281308e-02	ci right 3.313412e-02	k: 156953	n:4760000
CLEC12B   4760000 perm   9487 sec   (502 perm/sec)   p_kst 3.297332e-02   p_cons 1.348739e-03   p_joint 2.586134e-04

Joint ci ratio: 1.115764e-01	ci left: 2.442637e-04	ci right 2.733297e-04	k: 1233	n:4770000
Cons ci ratio: 4.884119e-02	ci left: 1.315695e-03	ci right 1.381769e-03	k: 6432	n:4770000
KS ci ratio: 9.720181e-03	ci left: 3.281163e-02	ci right 3.313233e-02	k: 157275	n:4770000
CLEC12B   4770000 perm   9526 sec   (501 perm/sec)   p_kst 3.297170e-02   p_cons 1.348428e-03   p_joint 2.584906e-04

Joint ci ratio: 1.115312e-01	ci left: 2.439560e-04	ci right 2.729730e-04	k: 1234	n:4780000
Cons ci ratio: 4.881087e-02	ci left: 1.314595e-03	ci right 1.380572e-03	k: 6440	n:4780000
KS ci ratio: 9.710286e-03	ci left: 3.280998e-02	ci right 3.313033e-02	k: 157596	n:4780000
CLEC12B   4780000 perm   9564 sec   (500 perm/sec)   p_kst 3.296987e-02   p_cons 1.347280e-03   p_joint 2.581590e-04

Joint ci ratio: 1.114861e-01	ci left: 2.436497e-04	ci right 2.726177e-04	k: 1235	n:4790000
Cons ci ratio: 4.875035e-02	ci left: 1.315150e-03	ci right 1.381071e-03	k: 6456	n:4790000
KS ci ratio: 9.700548e-03	ci left: 3.280750e-02	ci right 3.312751e-02	k: 157913	n:4790000
CLEC12B   4790000 perm   9603 sec   (499 perm/sec)   p_kst 3.296722e-02   p_cons 1.347808e-03   p_joint 2.578288e-04

Joint ci ratio: 1.114411e-01	ci left: 2.433446e-04	ci right 2.722638e-04	k: 1236	n:4800000
Cons ci ratio: 4.870512e-02	ci left: 1.314880e-03	ci right 1.380724e-03	k: 6468	n:4800000
KS ci ratio: 9.690744e-03	ci left: 3.280566e-02	ci right 3.312532e-02	k: 158233	n:4800000
CLEC12B   4800000 perm   9641 sec   (498 perm/sec)   p_kst 3.296521e-02   p_cons 1.347500e-03   p_joint 2.575000e-04

Joint ci ratio: 1.111717e-01	ci left: 2.440514e-04	ci right 2.729799e-04	k: 1242	n:4810000
Cons ci ratio: 4.866001e-02	ci left: 1.314611e-03	ci right 1.380379e-03	k: 6480	n:4810000
KS ci ratio: 9.680970e-03	ci left: 3.280382e-02	ci right 3.312314e-02	k: 158553	n:4810000
CLEC12B   4810000 perm   9681 sec   (497 perm/sec)   p_kst 3.296320e-02   p_cons 1.347193e-03   p_joint 2.582121e-04

Joint ci ratio: 1.110378e-01	ci left: 2.441501e-04	ci right 2.730533e-04	k: 1245	n:4820000
Cons ci ratio: 4.858507e-02	ci left: 1.315982e-03	ci right 1.381715e-03	k: 6500	n:4820000
KS ci ratio: 9.670848e-03	ci left: 3.280448e-02	ci right 3.312347e-02	k: 158885	n:4820000
CLEC12B   4820000 perm   9720 sec   (496 perm/sec)   p_kst 3.296369e-02   p_cons 1.348548e-03   p_joint 2.582988e-04

Joint ci ratio: 1.109488e-01	ci left: 2.440472e-04	ci right 2.729135e-04	k: 1247	n:4830000
Cons ci ratio: 4.854030e-02	ci left: 1.315712e-03	ci right 1.381368e-03	k: 6512	n:4830000
KS ci ratio: 9.659660e-03	ci left: 3.281236e-02	ci right 3.313106e-02	k: 159252	n:4830000
CLEC12B   4830000 perm   9758 sec   (495 perm/sec)   p_kst 3.297143e-02   p_cons 1.348240e-03   p_joint 2.581781e-04

Joint ci ratio: 1.108600e-01	ci left: 2.439448e-04	ci right 2.727743e-04	k: 1249	n:4840000
Cons ci ratio: 4.846591e-02	ci left: 1.317076e-03	ci right 1.382697e-03	k: 6532	n:4840000
KS ci ratio: 9.649073e-03	ci left: 3.281650e-02	ci right 3.313488e-02	k: 159601	n:4840000
CLEC12B   4840000 perm   9797 sec   (494 perm/sec)   p_kst 3.297541e-02   p_cons 1.349587e-03   p_joint 2.580579e-04

Joint ci ratio: 1.107714e-01	ci left: 2.438427e-04	ci right 2.726357e-04	k: 1251	n:4850000
Cons ci ratio: 4.842888e-02	ci left: 1.316397e-03	ci right 1.381933e-03	k: 6542	n:4850000
KS ci ratio: 9.639175e-03	ci left: 3.281630e-02	ci right 3.313436e-02	k: 159929	n:4850000
CLEC12B   4850000 perm   9837 sec   (493 perm/sec)   p_kst 3.297505e-02   p_cons 1.348866e-03   p_joint 2.579381e-04

Joint ci ratio: 1.105949e-01	ci left: 2.441413e-04	ci right 2.729205e-04	k: 1255	n:4860000
Cons ci ratio: 4.836238e-02	ci left: 1.317347e-03	ci right 1.382838e-03	k: 6560	n:4860000
KS ci ratio: 9.629059e-03	ci left: 3.281775e-02	ci right 3.313548e-02	k: 160265	n:4860000
CLEC12B   4860000 perm   9876 sec   (492 perm/sec)   p_kst 3.297634e-02   p_cons 1.349794e-03   p_joint 2.582305e-04

Joint ci ratio: 1.103316e-01	ci left: 2.448379e-04	ci right 2.736262e-04	k: 1261	n:4870000
Cons ci ratio: 4.831822e-02	ci left: 1.317076e-03	ci right 1.382492e-03	k: 6572	n:4870000
KS ci ratio: 9.619284e-03	ci left: 3.281714e-02	ci right 3.313454e-02	k: 160591	n:4870000
CLEC12B   4870000 perm   9915 sec   (491 perm/sec)   p_kst 3.297556e-02   p_cons 1.349487e-03   p_joint 2.589322e-04

Joint ci ratio: 1.102007e-01	ci left: 2.449340e-04	ci right 2.736972e-04	k: 1264	n:4880000
Cons ci ratio: 4.826684e-02	ci left: 1.317212e-03	ci right 1.382563e-03	k: 6586	n:4880000
KS ci ratio: 9.609292e-03	ci left: 3.281817e-02	ci right 3.313525e-02	k: 160925	n:4880000
CLEC12B   4880000 perm   9954 sec   (490 perm/sec)   p_kst 3.297643e-02   p_cons 1.349590e-03   p_joint 2.590164e-04

Joint ci ratio: 1.101137e-01	ci left: 2.448309e-04	ci right 2.735577e-04	k: 1266	n:4890000
Cons ci ratio: 4.820466e-02	ci left: 1.317953e-03	ci right 1.383254e-03	k: 6603	n:4890000
KS ci ratio: 9.599239e-03	ci left: 3.281981e-02	ci right 3.313657e-02	k: 161262	n:4890000
CLEC12B   4890000 perm   9993 sec   (489 perm/sec)   p_kst 3.297791e-02   p_cons 1.350307e-03   p_joint 2.588957e-04

Joint ci ratio: 1.100269e-01	ci left: 2.447281e-04	ci right 2.734188e-04	k: 1268	n:4900000
Cons ci ratio: 4.815000e-02	ci left: 1.318287e-03	ci right 1.383529e-03	k: 6618	n:4900000
KS ci ratio: 9.589831e-03	ci left: 3.281737e-02	ci right 3.313380e-02	k: 161579	n:4900000
CLEC12B   4900000 perm   10033 sec   (488 perm/sec)   p_kst 3.297531e-02   p_cons 1.350612e-03   p_joint 2.587755e-04

Joint ci ratio: 1.098971e-01	ci left: 2.448239e-04	ci right 2.734898e-04	k: 1271	n:4910000
Cons ci ratio: 4.809553e-02	ci left: 1.318621e-03	ci right 1.383803e-03	k: 6633	n:4910000
KS ci ratio: 9.580390e-03	ci left: 3.281534e-02	ci right 3.313144e-02	k: 161898	n:4910000
CLEC12B   4910000 perm   10072 sec   (487 perm/sec)   p_kst 3.297312e-02   p_cons 1.350916e-03   p_joint 2.588595e-04

Joint ci ratio: 1.097247e-01	ci left: 2.451170e-04	ci right 2.737692e-04	k: 1275	n:4920000
Cons ci ratio: 4.804848e-02	ci left: 1.318551e-03	ci right 1.383664e-03	k: 6646	n:4920000
KS ci ratio: 9.570366e-03	ci left: 3.281738e-02	ci right 3.313317e-02	k: 162237	n:4920000
CLEC12B   4920000 perm   10111 sec   (487 perm/sec)   p_kst 3.297500e-02   p_cons 1.350813e-03   p_joint 2.591463e-04

Joint ci ratio: 1.097247e-01	ci left: 2.446198e-04	ci right 2.732139e-04	k: 1275	n:4930000
Cons ci ratio: 4.796192e-02	ci left: 1.320686e-03	ci right 1.385784e-03	k: 6670	n:4930000
KS ci ratio: 9.560434e-03	ci left: 3.281901e-02	ci right 3.313448e-02	k: 162574	n:4930000
CLEC12B   4930000 perm   10151 sec   (486 perm/sec)   p_kst 3.297647e-02   p_cons 1.352941e-03   p_joint 2.586207e-04

Joint ci ratio: 1.095531e-01	ci left: 2.449121e-04	ci right 2.734928e-04	k: 1279	n:4940000
Cons ci ratio: 4.791525e-02	ci left: 1.320613e-03	ci right 1.385642e-03	k: 6683	n:4940000
KS ci ratio: 9.550746e-03	ci left: 3.281922e-02	ci right 3.313437e-02	k: 162904	n:4940000
CLEC12B   4940000 perm   10191 sec   (485 perm/sec)   p_kst 3.297652e-02   p_cons 1.352834e-03   p_joint 2.589069e-04

Joint ci ratio: 1.095104e-01	ci left: 2.446138e-04	ci right 2.731478e-04	k: 1280	n:4950000
Cons ci ratio: 4.787231e-02	ci left: 1.320340e-03	ci right 1.385296e-03	k: 6695	n:4950000
KS ci ratio: 9.541328e-03	ci left: 3.281781e-02	ci right 3.313263e-02	k: 163226	n:4950000
CLEC12B   4950000 perm   10230 sec   (484 perm/sec)   p_kst 3.297495e-02   p_cons 1.352525e-03   p_joint 2.585859e-04

Joint ci ratio: 1.093824e-01	ci left: 2.447089e-04	ci right 2.732185e-04	k: 1283	n:4960000
Cons ci ratio: 4.782234e-02	ci left: 1.320467e-03	ci right 1.385359e-03	k: 6709	n:4960000
KS ci ratio: 9.532270e-03	ci left: 3.281420e-02	ci right 3.312869e-02	k: 163537	n:4960000
CLEC12B   4960000 perm   10271 sec   (483 perm/sec)   p_kst 3.297117e-02   p_cons 1.352621e-03   p_joint 2.586694e-04

Joint ci ratio: 1.092973e-01	ci left: 2.446080e-04	ci right 2.730822e-04	k: 1285	n:4970000
Cons ci ratio: 4.778320e-02	ci left: 1.319997e-03	ci right 1.384812e-03	k: 6720	n:4970000
KS ci ratio: 9.522246e-03	ci left: 3.281722e-02	ci right 3.313141e-02	k: 163881	n:4970000
CLEC12B   4970000 perm   10312 sec   (482 perm/sec)   p_kst 3.297404e-02   p_cons 1.352113e-03   p_joint 2.585513e-04

Joint ci ratio: 1.091277e-01	ci left: 2.448981e-04	ci right 2.733590e-04	k: 1289	n:4980000
Cons ci ratio: 4.771932e-02	ci left: 1.320918e-03	ci right 1.385688e-03	k: 6738	n:4980000
KS ci ratio: 9.512973e-03	ci left: 3.281543e-02	ci right 3.312929e-02	k: 164201	n:4980000
CLEC12B   4980000 perm   10353 sec   (481 perm/sec)   p_kst 3.297209e-02   p_cons 1.353012e-03   p_joint 2.588353e-04

Joint ci ratio: 1.091277e-01	ci left: 2.444073e-04	ci right 2.728111e-04	k: 1289	n:4990000
Cons ci ratio: 4.767690e-02	ci left: 1.320647e-03	ci right 1.385345e-03	k: 6750	n:4990000
KS ci ratio: 9.502562e-03	ci left: 3.282144e-02	ci right 3.313501e-02	k: 164560	n:4990000
CLEC12B   4990000 perm   10394 sec   (480 perm/sec)   p_kst 3.297796e-02   p_cons 1.352705e-03   p_joint 2.583166e-04

Joint ci ratio: 1.090010e-01	ci left: 2.445021e-04	ci right 2.728819e-04	k: 1292	n:5000000
Cons ci ratio: 4.761697e-02	ci left: 1.321365e-03	ci right 1.386015e-03	k: 6767	n:5000000
KS ci ratio: 9.492483e-03	ci left: 3.282543e-02	ci right 3.313871e-02	k: 164909	n:5000000
CLEC12B   5000000 perm   10435 sec   (479 perm/sec)   p_kst 3.298180e-02   p_cons 1.353400e-03   p_joint 2.584000e-04

Outputting figure to mutsig2_images.part000000000039/CLEC12B.3_874_5000000_0.032982_0.0013534_0.0002584.png
                gene_name: CLEC12B
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.0014 
      ci_cons_bounds_left: 0.0013 
     ci_cons_bounds_right: 0.0014 
                  p_joint: 0.00026 
     ci_joint_bounds_left: 0.00024 
    ci_joint_bounds_right: 0.00027 

Current progress: 45 percent done.
CLEC18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
Cons ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
KS ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
CLEC18B   10000 perm   2 sec   (6077 perm/sec)   p_kst 1.740000e-02   p_cons 2.593000e-01   p_joint 1.024000e-01

Joint ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
Cons ci ratio: 4.742782e-02	ci left: 2.485239e-01	ci right 2.606475e-01	k: 5091	n:20000
KS ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
CLEC18B   20000 perm   4 sec   (5407 perm/sec)   p_kst 1.495000e-02   p_cons 2.545500e-01   p_joint 4.305000e-02

Joint ci ratio: 1.128463e-01	ci left: 3.648066e-02	ci right 4.087593e-02	k: 1159	n:30000
Cons ci ratio: 3.870776e-02	ci left: 2.498102e-01	ci right 2.597040e-01	k: 7642	n:30000
KS ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
CLEC18B   30000 perm   6 sec   (5138 perm/sec)   p_kst 1.636667e-02   p_cons 2.547333e-01   p_joint 3.863333e-02

Joint ci ratio: 1.066001e-01	ci left: 3.095424e-02	ci right 3.446403e-02	k: 1307	n:40000
Cons ci ratio: 3.352562e-02	ci left: 2.504357e-01	ci right 2.589999e-01	k: 10188	n:40000
KS ci ratio: 1.519060e-01	ci left: 1.512992e-02	ci right 1.764100e-02	k: 654	n:40000
CLEC18B   40000 perm   8 sec   (4973 perm/sec)   p_kst 1.635000e-02   p_cons 2.547000e-01   p_joint 3.267500e-02

Joint ci ratio: 1.102041e-01	ci left: 2.331828e-02	ci right 2.605728e-02	k: 1233	n:50000
Cons ci ratio: 3.001827e-02	ci left: 2.504874e-01	ci right 2.581412e-01	k: 12715	n:50000
KS ci ratio: 1.343548e-01	ci left: 1.561424e-02	ci right 1.788236e-02	k: 836	n:50000
CLEC18B   50000 perm   10 sec   (4844 perm/sec)   p_kst 1.672000e-02   p_cons 2.543000e-01   p_joint 2.466000e-02

Joint ci ratio: 1.019806e-01	ci left: 2.280636e-02	ci right 2.527331e-02	k: 1441	n:60000
Cons ci ratio: 2.729989e-02	ci left: 2.522460e-01	ci right 2.592443e-01	k: 15344	n:60000
KS ci ratio: 1.232366e-01	ci left: 1.556045e-02	ci right 1.762003e-02	k: 994	n:60000
CLEC18B   60000 perm   13 sec   (4730 perm/sec)   p_kst 1.656667e-02   p_cons 2.557333e-01   p_joint 2.401667e-02

Joint ci ratio: 6.571637e-02	ci left: 4.677959e-02	ci right 4.997226e-02	k: 3385	n:70000
Cons ci ratio: 2.523928e-02	ci left: 2.530403e-01	ci right 2.595228e-01	k: 17939	n:70000
KS ci ratio: 1.137881e-01	ci left: 1.572198e-02	ci right 1.763267e-02	k: 1166	n:70000
CLEC18B   70000 perm   15 sec   (4633 perm/sec)   p_kst 1.665714e-02   p_cons 2.562714e-01   p_joint 4.835714e-02

Joint ci ratio: 6.526347e-02	ci left: 4.173999e-02	ci right 4.456826e-02	k: 3451	n:80000
Cons ci ratio: 2.359825e-02	ci left: 2.534267e-01	ci right 2.594910e-01	k: 20516	n:80000
KS ci ratio: 1.059840e-01	ci left: 1.592071e-02	ci right 1.771457e-02	k: 1344	n:80000
CLEC18B   80000 perm   18 sec   (4542 perm/sec)   p_kst 1.680000e-02   p_cons 2.564500e-01   p_joint 4.313750e-02

Joint ci ratio: 7.068326e-02	ci left: 3.187521e-02	ci right 3.422168e-02	k: 2973	n:90000
Cons ci ratio: 2.224775e-02	ci left: 2.536161e-01	ci right 2.593330e-01	k: 23082	n:90000
KS ci ratio: 1.015431e-01	ci left: 1.546112e-02	ci right 1.712583e-02	k: 1465	n:90000
CLEC18B   90000 perm   20 sec   (4460 perm/sec)   p_kst 1.627778e-02   p_cons 2.564667e-01   p_joint 3.303333e-02

Joint ci ratio: 6.427602e-02	ci left: 3.470618e-02	ci right 3.702084e-02	k: 3585	n:100000
Cons ci ratio: 2.108826e-02	ci left: 2.540844e-01	ci right 2.595097e-01	k: 25679	n:100000
KS ci ratio: 9.644943e-02	ci left: 1.546565e-02	ci right 1.704259e-02	k: 1624	n:100000
CLEC18B   100000 perm   23 sec   (4383 perm/sec)   p_kst 1.624000e-02   p_cons 2.567900e-01   p_joint 3.585000e-02

Outputting figure to mutsig2_images.part000000000039/CLEC18B.3_1420_100000_0.01624_0.25679_0.03585.png
                gene_name: CLEC18B
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 47 percent done.
CLEC3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
KS ci ratio: 7.397016e-03	ci left: 9.619446e-01	ci right 9.691809e-01	k: 9657	n:10000
CLEC3A   10000 perm   1 sec   (6717 perm/sec)   p_kst 9.657000e-01   p_cons 6.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC3A.3_606_10000_0.9657_0.6069_1.png
                gene_name: CLEC3A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CLEC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
Cons ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
KS ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
CLEC5A   10000 perm   2 sec   (6463 perm/sec)   p_kst 5.360000e-01   p_cons 5.162000e-01   p_joint 9.296000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC5A.3_591_10000_0.536_0.5162_0.9296.png
                gene_name: CLEC5A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 51 percent done.
CLEC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.064686e-02	ci left: 6.110055e-01	ci right 6.301242e-01	k: 6206	n:10000
Cons ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
KS ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
CLEC6A   10000 perm   2 sec   (6417 perm/sec)   p_kst 4.754000e-01   p_cons 3.609000e-01   p_joint 6.206000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC6A.3_654_10000_0.4754_0.3609_0.6206.png
                gene_name: CLEC6A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 53 percent done.
CLGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
KS ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
CLGN   10000 perm   2 sec   (6085 perm/sec)   p_kst 6.590000e-01   p_cons 2.650000e-02   p_joint 3.046000e-01

Joint ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
Cons ci ratio: 1.668701e-01	ci left: 2.460579e-02	ci right 2.913318e-02	k: 536	n:20000
KS ci ratio: 2.010046e-02	ci left: 6.487162e-01	ci right 6.619386e-01	k: 13107	n:20000
CLGN   20000 perm   4 sec   (5424 perm/sec)   p_kst 6.553500e-01   p_cons 2.680000e-02   p_joint 6.810000e-02

Joint ci ratio: 8.174109e-02	ci left: 6.828229e-02	ci right 7.413441e-02	k: 2135	n:30000
Cons ci ratio: 1.334255e-01	ci left: 2.609784e-02	ci right 2.986098e-02	k: 838	n:30000
KS ci ratio: 1.631480e-02	ci left: 6.526337e-01	ci right 6.634024e-01	k: 19741	n:30000
CLGN   30000 perm   6 sec   (5123 perm/sec)   p_kst 6.580333e-01   p_cons 2.793333e-02   p_joint 7.116667e-02

Joint ci ratio: 3.717357e-02	ci left: 2.134652e-01	ci right 2.215758e-01	k: 8700	n:40000
Cons ci ratio: 1.152680e-01	ci left: 2.647803e-02	ci right 2.974096e-02	k: 1123	n:40000
KS ci ratio: 1.419694e-02	ci left: 6.511956e-01	ci right 6.605318e-01	k: 26235	n:40000
CLGN   40000 perm   8 sec   (4908 perm/sec)   p_kst 6.558750e-01   p_cons 2.807500e-02   p_joint 2.175000e-01

Joint ci ratio: 6.376136e-02	ci left: 6.803474e-02	ci right 7.253531e-02	k: 3513	n:50000
Cons ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
KS ci ratio: 1.273688e-02	ci left: 6.503130e-01	ci right 6.586691e-01	k: 32725	n:50000
CLGN   50000 perm   10 sec   (4768 perm/sec)   p_kst 6.545000e-01   p_cons 2.794000e-02   p_joint 7.026000e-02

Joint ci ratio: 4.367193e-02	ci left: 1.157920e-01	ci right 1.209783e-01	k: 7102	n:60000
Cons ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
KS ci ratio: 1.162373e-02	ci left: 6.508130e-01	ci right 6.584387e-01	k: 39278	n:60000
CLGN   60000 perm   13 sec   (4684 perm/sec)   p_kst 6.546333e-01   p_cons 2.836667e-02   p_joint 1.183667e-01

Outputting figure to mutsig2_images.part000000000039/CLGN.3_1889_60000_0.65463_0.028367_0.11837.png
                gene_name: CLGN
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 55 percent done.
CLIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
Cons ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
CLIP3   10000 perm   2 sec   (6181 perm/sec)   p_kst 4.960000e-01   p_cons 7.370000e-02   p_joint 2.600000e-01

Joint ci ratio: 3.827756e-02	ci left: 3.373647e-01	ci right 3.505807e-01	k: 6879	n:20000
Cons ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
KS ci ratio: 2.836426e-02	ci left: 4.814994e-01	ci right 4.954039e-01	k: 9769	n:20000
CLIP3   20000 perm   4 sec   (5502 perm/sec)   p_kst 4.884500e-01   p_cons 7.425000e-02   p_joint 3.439500e-01

Outputting figure to mutsig2_images.part000000000039/CLIP3.3_1696_20000_0.48845_0.07425_0.34395.png
                gene_name: CLIP3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
CLIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
Cons ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
KS ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
CLIP4   10000 perm   2 sec   (5813 perm/sec)   p_kst 4.536000e-01   p_cons 6.080000e-02   p_joint 1.783000e-01

Joint ci ratio: 3.398387e-02	ci left: 3.926521e-01	ci right 4.062772e-01	k: 7989	n:20000
Cons ci ratio: 1.062227e-01	ci left: 6.035399e-02	ci right 6.717352e-02	k: 1274	n:20000
KS ci ratio: 3.026664e-02	ci left: 4.491790e-01	ci right 4.630337e-01	k: 9122	n:20000
CLIP4   20000 perm   4 sec   (5171 perm/sec)   p_kst 4.561000e-01   p_cons 6.370000e-02   p_joint 3.994500e-01

Joint ci ratio: 3.073429e-02	ci left: 3.461617e-01	ci right 3.570004e-01	k: 10547	n:30000
Cons ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
KS ci ratio: 2.477481e-02	ci left: 4.492198e-01	ci right 4.605223e-01	k: 13646	n:30000
CLIP4   30000 perm   6 sec   (4958 perm/sec)   p_kst 4.548667e-01   p_cons 6.630000e-02   p_joint 3.515667e-01

Outputting figure to mutsig2_images.part000000000039/CLIP4.3_2178_30000_0.45487_0.0663_0.35157.png
                gene_name: CLIP4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
CLN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
Cons ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
KS ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
CLN6   10000 perm   2 sec   (5987 perm/sec)   p_kst 4.788000e-01   p_cons 4.789000e-01   p_joint 5.431000e-01

Outputting figure to mutsig2_images.part000000000039/CLN6.3_964_10000_0.4788_0.4789_0.5431.png
                gene_name: CLN6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 60 percent done.
CLPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
Cons ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
KS ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
CLPB   10000 perm   2 sec   (5951 perm/sec)   p_kst 7.258000e-01   p_cons 3.727000e-01   p_joint 7.289000e-01

Outputting figure to mutsig2_images.part000000000039/CLPB.3_2192_10000_0.7258_0.3727_0.7289.png
                gene_name: CLPB
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 62 percent done.
CLDN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
KS ci ratio: 2.810815e-02	ci left: 6.510225e-01	ci right 6.696841e-01	k: 6604	n:10000
CLDN4   10000 perm   1 sec   (7292 perm/sec)   p_kst 6.604000e-01   p_cons 8.720000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.945464e-02	ci left: 8.366805e-02	ci right 9.155233e-02	k: 1751	n:20000
KS ci ratio: 1.961985e-02	ci left: 6.596157e-01	ci right 6.727360e-01	k: 13324	n:20000
CLDN4   20000 perm   3 sec   (6349 perm/sec)   p_kst 6.662000e-01   p_cons 8.755000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLDN4.2_634_20000_0.6662_0.08755_1.png
                gene_name: CLDN4
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CLDN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
Cons ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
KS ci ratio: 8.876129e-02	ci left: 1.559077e-01	ci right 1.704891e-01	k: 1631	n:10000
CLDN9   10000 perm   1 sec   (6896 perm/sec)   p_kst 1.631000e-01   p_cons 7.787000e-01   p_joint 3.953000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN9.2_658_10000_0.1631_0.7787_0.3953.png
                gene_name: CLDN9
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 66 percent done.
CLDND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
CLDND1   10000 perm   1 sec   (6777 perm/sec)   p_kst 2.439000e-01   p_cons 1.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLDND1.2_855_10000_0.2439_0.1438_1.png
                gene_name: CLDND1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CLEC17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
Cons ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
KS ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
CLEC17A   10000 perm   1 sec   (6796 perm/sec)   p_kst 9.658000e-01   p_cons 2.591000e-01   p_joint 4.970000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC17A.2_918_10000_0.9658_0.2591_0.497.png
                gene_name: CLEC17A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 70 percent done.
CLEC4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
Cons ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
KS ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
CLEC4D   10000 perm   1 sec   (7231 perm/sec)   p_kst 6.467000e-01   p_cons 8.788000e-01   p_joint 9.247000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4D.2_672_10000_0.6467_0.8788_0.9247.png
                gene_name: CLEC4D
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 72 percent done.
CLEC4M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
KS ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
CLEC4M   10000 perm   2 sec   (6614 perm/sec)   p_kst 1.440000e-02   p_cons 3.407000e-01   p_joint 7.270000e-02

Joint ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
Cons ci ratio: 3.792404e-02	ci left: 3.415452e-01	ci right 3.547989e-01	k: 6963	n:20000
KS ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
CLEC4M   20000 perm   3 sec   (5800 perm/sec)   p_kst 1.305000e-02   p_cons 3.481500e-01   p_joint 3.020000e-02

Joint ci ratio: 8.472587e-02	ci left: 6.377137e-02	ci right 6.944625e-02	k: 1997	n:30000
Cons ci ratio: 3.292106e-02	ci left: 3.156184e-01	ci right 3.262163e-01	k: 9627	n:30000
KS ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
CLEC4M   30000 perm   5 sec   (5499 perm/sec)   p_kst 1.253333e-02   p_cons 3.209000e-01   p_joint 6.656667e-02

Joint ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
Cons ci ratio: 2.858642e-02	ci left: 3.151803e-01	ci right 3.243459e-01	k: 12790	n:40000
KS ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
CLEC4M   40000 perm   8 sec   (5307 perm/sec)   p_kst 1.310000e-02   p_cons 3.197500e-01   p_joint 2.925000e-02

Joint ci ratio: 8.646925e-02	ci left: 3.777031e-02	ci right 4.120342e-02	k: 1973	n:50000
Cons ci ratio: 2.554352e-02	ci left: 3.160912e-01	ci right 3.242897e-01	k: 16009	n:50000
KS ci ratio: 1.540772e-01	ci left: 1.179458e-02	ci right 1.378258e-02	k: 638	n:50000
CLEC4M   50000 perm   10 sec   (5159 perm/sec)   p_kst 1.276000e-02   p_cons 3.201800e-01   p_joint 3.946000e-02

Joint ci ratio: 8.307187e-02	ci left: 3.429488e-02	ci right 3.728357e-02	k: 2146	n:60000
Cons ci ratio: 2.181288e-02	ci left: 3.460828e-01	ci right 3.537318e-01	k: 20994	n:60000
KS ci ratio: 1.378395e-01	ci left: 1.238254e-02	ci right 1.423164e-02	k: 797	n:60000
CLEC4M   60000 perm   12 sec   (5041 perm/sec)   p_kst 1.328333e-02   p_cons 3.499000e-01   p_joint 3.576667e-02

Joint ci ratio: 7.719514e-02	ci left: 3.415539e-02	ci right 3.691186e-02	k: 2486	n:70000
Cons ci ratio: 2.022411e-02	ci left: 3.457104e-01	ci right 3.527878e-01	k: 24447	n:70000
KS ci ratio: 1.269256e-01	ci left: 1.258898e-02	ci right 1.430885e-02	k: 940	n:70000
CLEC4M   70000 perm   14 sec   (4935 perm/sec)   p_kst 1.342857e-02   p_cons 3.492429e-01   p_joint 3.551429e-02

Joint ci ratio: 7.202952e-02	ci left: 3.441262e-02	ci right 3.699620e-02	k: 2855	n:80000
Cons ci ratio: 1.890002e-02	ci left: 3.463698e-01	ci right 3.529911e-01	k: 27974	n:80000
KS ci ratio: 1.184176e-01	ci left: 1.271175e-02	ci right 1.432382e-02	k: 1080	n:80000
CLEC4M   80000 perm   17 sec   (4833 perm/sec)   p_kst 1.350000e-02   p_cons 3.496750e-01   p_joint 3.568750e-02

Joint ci ratio: 6.836375e-02	ci left: 3.403825e-02	ci right 3.645849e-02	k: 3171	n:90000
Cons ci ratio: 1.778862e-02	ci left: 3.473378e-01	ci right 3.535830e-01	k: 31541	n:90000
KS ci ratio: 1.122610e-01	ci left: 1.261576e-02	ci right 1.412696e-02	k: 1202	n:90000
CLEC4M   90000 perm   19 sec   (4739 perm/sec)   p_kst 1.335556e-02   p_cons 3.504556e-01   p_joint 3.523333e-02

Joint ci ratio: 6.495541e-02	ci left: 3.399740e-02	ci right 3.628966e-02	k: 3513	n:100000
Cons ci ratio: 1.686083e-02	ci left: 3.479015e-01	ci right 3.538272e-01	k: 35086	n:100000
KS ci ratio: 1.071383e-01	ci left: 1.250177e-02	ci right 1.392667e-02	k: 1320	n:100000
CLEC4M   100000 perm   22 sec   (4649 perm/sec)   p_kst 1.320000e-02   p_cons 3.508600e-01   p_joint 3.513000e-02

Joint ci ratio: 6.400734e-02	ci left: 3.191633e-02	ci right 3.403566e-02	k: 3626	n:110000
Cons ci ratio: 1.608057e-02	ci left: 3.479158e-01	ci right 3.535648e-01	k: 38581	n:110000
KS ci ratio: 1.024063e-01	ci left: 1.247183e-02	ci right 1.382675e-02	k: 1445	n:110000
CLEC4M   110000 perm   24 sec   (4549 perm/sec)   p_kst 1.313636e-02   p_cons 3.507364e-01   p_joint 3.296364e-02

Joint ci ratio: 5.938943e-02	ci left: 3.399191e-02	ci right 3.608064e-02	k: 4203	n:120000
Cons ci ratio: 1.541160e-02	ci left: 3.475753e-01	ci right 3.529819e-01	k: 42033	n:120000
KS ci ratio: 9.828217e-02	ci left: 1.243990e-02	ci right 1.373379e-02	k: 1569	n:120000
CLEC4M   120000 perm   27 sec   (4467 perm/sec)   p_kst 1.307500e-02   p_cons 3.502750e-01   p_joint 3.502500e-02

Outputting figure to mutsig2_images.part000000000039/CLEC4M.2_1249_120000_0.013075_0.35028_0.035025.png
                gene_name: CLEC4M
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 74 percent done.
CLEC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
CLEC7A   10000 perm   1 sec   (7154 perm/sec)   p_kst 4.000000e-03   p_cons 2.957000e-01   p_joint 7.700000e-03

Joint ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
Cons ci ratio: 4.286050e-02	ci left: 2.885358e-01	ci right 3.012239e-01	k: 5897	n:20000
KS ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
CLEC7A   20000 perm   3 sec   (6273 perm/sec)   p_kst 3.200000e-03   p_cons 2.948500e-01   p_joint 2.000000e-03

Joint ci ratio: 2.741931e-01	ci left: 5.839277e-03	ci right 7.724814e-03	k: 202	n:30000
Cons ci ratio: 3.504043e-02	ci left: 2.891797e-01	ci right 2.995269e-01	k: 8830	n:30000
KS ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
CLEC7A   30000 perm   5 sec   (5940 perm/sec)   p_kst 3.266667e-03   p_cons 2.943333e-01   p_joint 6.733333e-03

Joint ci ratio: 2.162195e-01	ci left: 7.268607e-03	ci right 9.053904e-03	k: 325	n:40000
Cons ci ratio: 3.020711e-02	ci left: 2.917778e-01	ci right 3.007518e-01	k: 11850	n:40000
KS ci ratio: 3.331123e-01	ci left: 2.876268e-03	ci right 4.047646e-03	k: 137	n:40000
CLEC7A   40000 perm   7 sec   (5718 perm/sec)   p_kst 3.425000e-03   p_cons 2.962500e-01   p_joint 8.125000e-03

Joint ci ratio: 1.949670e-01	ci left: 7.237827e-03	ci right 8.820093e-03	k: 400	n:50000
Cons ci ratio: 2.697246e-02	ci left: 2.929569e-01	ci right 3.009867e-01	k: 14848	n:50000
KS ci ratio: 3.001358e-01	ci left: 2.890289e-03	ci right 3.928687e-03	k: 169	n:50000
CLEC7A   50000 perm   9 sec   (5526 perm/sec)   p_kst 3.380000e-03   p_cons 2.969600e-01   p_joint 8.000000e-03

Joint ci ratio: 1.938854e-01	ci left: 6.110446e-03	ci right 7.437938e-03	k: 405	n:60000
Cons ci ratio: 2.460746e-02	ci left: 2.935613e-01	ci right 3.008917e-01	k: 17833	n:60000
KS ci ratio: 2.767212e-01	ci left: 2.872454e-03	ci right 3.809937e-03	k: 199	n:60000
CLEC7A   60000 perm   11 sec   (5377 perm/sec)   p_kst 3.316667e-03   p_cons 2.972167e-01   p_joint 6.750000e-03

Joint ci ratio: 1.142369e-01	ci left: 1.559702e-02	ci right 1.750050e-02	k: 1157	n:70000
Cons ci ratio: 2.279949e-02	ci left: 2.935167e-01	ci right 3.003002e-01	k: 20783	n:70000
KS ci ratio: 2.558279e-01	ci left: 2.915448e-03	ci right 3.783670e-03	k: 233	n:70000
CLEC7A   70000 perm   13 sec   (5246 perm/sec)   p_kst 3.328571e-03   p_cons 2.969000e-01   p_joint 1.652857e-02

Joint ci ratio: 9.720060e-02	ci left: 1.895564e-02	ci right 2.090440e-02	k: 1593	n:80000
Cons ci ratio: 2.133473e-02	ci left: 2.935856e-01	ci right 2.999292e-01	k: 23740	n:80000
KS ci ratio: 2.364085e-01	ci left: 3.020242e-03	ci right 3.841420e-03	k: 273	n:80000
CLEC7A   80000 perm   16 sec   (5126 perm/sec)   p_kst 3.412500e-03   p_cons 2.967500e-01   p_joint 1.991250e-02

Joint ci ratio: 9.594080e-02	ci left: 1.733668e-02	ci right 1.909457e-02	k: 1638	n:90000
Cons ci ratio: 2.009886e-02	ci left: 2.940933e-01	ci right 3.000753e-01	k: 26737	n:90000
KS ci ratio: 2.208309e-01	ci left: 3.103691e-03	ci right 3.884407e-03	k: 313	n:90000
CLEC7A   90000 perm   18 sec   (5016 perm/sec)   p_kst 3.477778e-03   p_cons 2.970778e-01   p_joint 1.820000e-02

Joint ci ratio: 9.535185e-02	ci left: 1.582691e-02	ci right 1.742130e-02	k: 1661	n:100000
Cons ci ratio: 1.909392e-02	ci left: 2.936702e-01	ci right 2.993416e-01	k: 29650	n:100000
KS ci ratio: 2.076813e-01	ci left: 3.181352e-03	ci right 3.927900e-03	k: 354	n:100000
CLEC7A   100000 perm   20 sec   (4910 perm/sec)   p_kst 3.540000e-03   p_cons 2.965000e-01   p_joint 1.661000e-02

Joint ci ratio: 9.122448e-02	ci left: 1.575542e-02	ci right 1.727023e-02	k: 1815	n:110000
Cons ci ratio: 1.820339e-02	ci left: 2.938472e-01	ci right 2.992544e-01	k: 32620	n:110000
KS ci ratio: 1.978894e-01	ci left: 3.202804e-03	ci right 3.914676e-03	k: 390	n:110000
CLEC7A   110000 perm   23 sec   (4805 perm/sec)   p_kst 3.545455e-03   p_cons 2.965455e-01   p_joint 1.650000e-02

Joint ci ratio: 8.743266e-02	ci left: 1.575417e-02	ci right 1.720267e-02	k: 1976	n:120000
Cons ci ratio: 1.744394e-02	ci left: 2.935925e-01	ci right 2.987673e-01	k: 35541	n:120000
KS ci ratio: 1.867481e-01	ci left: 3.316675e-03	ci right 4.007653e-03	k: 438	n:120000
CLEC7A   120000 perm   25 sec   (4710 perm/sec)   p_kst 3.650000e-03   p_cons 2.961750e-01   p_joint 1.646667e-02

Joint ci ratio: 8.379896e-02	ci left: 1.585968e-02	ci right 1.725431e-02	k: 2151	n:130000
Cons ci ratio: 1.675676e-02	ci left: 2.937648e-01	ci right 2.987366e-01	k: 38512	n:130000
KS ci ratio: 1.801041e-01	ci left: 3.303737e-03	ci right 3.964862e-03	k: 471	n:130000
CLEC7A   130000 perm   28 sec   (4614 perm/sec)   p_kst 3.623077e-03   p_cons 2.962462e-01   p_joint 1.654615e-02

Joint ci ratio: 8.084901e-02	ci left: 1.584617e-02	ci right 1.718825e-02	k: 2311	n:140000
Cons ci ratio: 1.617036e-02	ci left: 2.932603e-01	ci right 2.980482e-01	k: 41391	n:140000
KS ci ratio: 1.753461e-01	ci left: 3.245200e-03	ci right 3.875636e-03	k: 497	n:140000
CLEC7A   140000 perm   31 sec   (4525 perm/sec)   p_kst 3.550000e-03   p_cons 2.956500e-01   p_joint 1.650714e-02

Joint ci ratio: 7.815801e-02	ci left: 1.584829e-02	ci right 1.714383e-02	k: 2473	n:150000
Cons ci ratio: 1.562269e-02	ci left: 2.933247e-01	ci right 2.979499e-01	k: 44345	n:150000
KS ci ratio: 1.698116e-01	ci left: 3.239351e-03	ci right 3.846755e-03	k: 530	n:150000
CLEC7A   150000 perm   34 sec   (4444 perm/sec)   p_kst 3.533333e-03   p_cons 2.956333e-01   p_joint 1.648667e-02

Joint ci ratio: 7.232038e-02	ci left: 1.737873e-02	ci right 1.868882e-02	k: 2884	n:160000
Cons ci ratio: 1.513124e-02	ci left: 2.932712e-01	ci right 2.977487e-01	k: 47281	n:160000
KS ci ratio: 1.644777e-01	ci left: 3.246494e-03	ci right 3.834223e-03	k: 565	n:160000
CLEC7A   160000 perm   37 sec   (4367 perm/sec)   p_kst 3.531250e-03   p_cons 2.955063e-01   p_joint 1.802500e-02

Joint ci ratio: 6.655159e-02	ci left: 1.933396e-02	ci right 2.067071e-02	k: 3399	n:170000
Cons ci ratio: 1.467990e-02	ci left: 2.933258e-01	ci right 2.976694e-01	k: 50234	n:170000
KS ci ratio: 1.589546e-01	ci left: 3.281301e-03	ci right 3.853481e-03	k: 605	n:170000
CLEC7A   170000 perm   40 sec   (4286 perm/sec)   p_kst 3.558824e-03   p_cons 2.954941e-01   p_joint 1.999412e-02

Joint ci ratio: 6.461246e-02	ci left: 1.939101e-02	ci right 2.069118e-02	k: 3606	n:180000
Cons ci ratio: 1.425945e-02	ci left: 2.935868e-01	ci right 2.978087e-01	k: 53225	n:180000
KS ci ratio: 1.547969e-01	ci left: 3.275143e-03	ci right 3.829925e-03	k: 638	n:180000
CLEC7A   180000 perm   43 sec   (4208 perm/sec)   p_kst 3.544444e-03   p_cons 2.956944e-01   p_joint 2.003333e-02

Joint ci ratio: 6.295152e-02	ci left: 1.937001e-02	ci right 2.063417e-02	k: 3799	n:190000
Cons ci ratio: 1.387142e-02	ci left: 2.938744e-01	ci right 2.979845e-01	k: 56226	n:190000
KS ci ratio: 1.501664e-01	ci left: 3.305266e-03	ci right 3.846897e-03	k: 678	n:190000
CLEC7A   190000 perm   46 sec   (4137 perm/sec)   p_kst 3.568421e-03   p_cons 2.959263e-01   p_joint 1.999474e-02

Joint ci ratio: 6.164121e-02	ci left: 1.920869e-02	ci right 2.043529e-02	k: 3963	n:200000
Cons ci ratio: 1.352364e-02	ci left: 2.938202e-01	ci right 2.978257e-01	k: 59164	n:200000
KS ci ratio: 1.462344e-01	ci left: 3.318144e-03	ci right 3.846405e-03	k: 715	n:200000
CLEC7A   200000 perm   49 sec   (4065 perm/sec)   p_kst 3.575000e-03   p_cons 2.958200e-01   p_joint 1.981500e-02

Joint ci ratio: 6.009089e-02	ci left: 1.926472e-02	ci right 2.046287e-02	k: 4170	n:210000
Cons ci ratio: 1.319113e-02	ci left: 2.940766e-01	ci right 2.979862e-01	k: 62166	n:210000
KS ci ratio: 1.426912e-01	ci left: 3.325371e-03	ci right 3.840862e-03	k: 751	n:210000
CLEC7A   210000 perm   53 sec   (3998 perm/sec)   p_kst 3.576190e-03   p_cons 2.960286e-01   p_joint 1.985714e-02

Joint ci ratio: 5.874786e-02	ci left: 1.925328e-02	ci right 2.042305e-02	k: 4363	n:220000
Cons ci ratio: 1.289647e-02	ci left: 2.938434e-01	ci right 2.976620e-01	k: 65065	n:220000
KS ci ratio: 1.388640e-01	ci left: 3.358407e-03	ci right 3.863901e-03	k: 793	n:220000
CLEC7A   220000 perm   56 sec   (3931 perm/sec)   p_kst 3.604545e-03   p_cons 2.957500e-01   p_joint 1.983182e-02

Joint ci ratio: 5.734357e-02	ci left: 1.934171e-02	ci right 2.048783e-02	k: 4579	n:230000
Cons ci ratio: 1.261597e-02	ci left: 2.937876e-01	ci right 2.975219e-01	k: 68000	n:230000
KS ci ratio: 1.347640e-01	ci left: 3.418149e-03	ci right 3.916227e-03	k: 842	n:230000
CLEC7A   230000 perm   59 sec   (3871 perm/sec)   p_kst 3.660870e-03   p_cons 2.956522e-01   p_joint 1.990870e-02

Joint ci ratio: 5.628739e-02	ci left: 1.925047e-02	ci right 2.036950e-02	k: 4753	n:240000
Cons ci ratio: 1.235733e-02	ci left: 2.935918e-01	ci right 2.972465e-01	k: 70900	n:240000
KS ci ratio: 1.317502e-01	ci left: 3.432810e-03	ci right 3.920963e-03	k: 881	n:240000
CLEC7A   240000 perm   63 sec   (3814 perm/sec)   p_kst 3.670833e-03   p_cons 2.954167e-01   p_joint 1.980417e-02

Joint ci ratio: 5.507126e-02	ci left: 1.931667e-02	ci right 2.041450e-02	k: 4965	n:250000
Cons ci ratio: 1.210873e-02	ci left: 2.935921e-01	ci right 2.971727e-01	k: 73845	n:250000
KS ci ratio: 1.289300e-01	ci left: 3.446413e-03	ci right 3.925207e-03	k: 920	n:250000
CLEC7A   250000 perm   66 sec   (3761 perm/sec)   p_kst 3.680000e-03   p_cons 2.953800e-01   p_joint 1.986000e-02

Joint ci ratio: 5.388824e-02	ci left: 1.940837e-02	ci right 2.048699e-02	k: 5185	n:260000
Cons ci ratio: 1.186721e-02	ci left: 2.938502e-01	ci right 2.973620e-01	k: 76857	n:260000
KS ci ratio: 1.256934e-01	ci left: 3.492600e-03	ci right 3.964723e-03	k: 968	n:260000
CLEC7A   260000 perm   70 sec   (3707 perm/sec)   p_kst 3.723077e-03   p_cons 2.956038e-01   p_joint 1.994231e-02

Joint ci ratio: 5.288321e-02	ci left: 1.941674e-02	ci right 2.047508e-02	k: 5384	n:270000
Cons ci ratio: 1.165347e-02	ci left: 2.935945e-01	ci right 2.970396e-01	k: 79735	n:270000
KS ci ratio: 1.231149e-01	ci left: 3.510373e-03	ci right 3.974454e-03	k: 1009	n:270000
CLEC7A   270000 perm   74 sec   (3654 perm/sec)   p_kst 3.737037e-03   p_cons 2.953148e-01   p_joint 1.994074e-02

Joint ci ratio: 5.188501e-02	ci left: 1.945995e-02	ci right 2.050002e-02	k: 5593	n:280000
Cons ci ratio: 1.144222e-02	ci left: 2.936713e-01	ci right 2.970544e-01	k: 82701	n:280000
KS ci ratio: 1.208043e-01	ci left: 3.520040e-03	ci right 3.976041e-03	k: 1048	n:280000
CLEC7A   280000 perm   78 sec   (3602 perm/sec)   p_kst 3.742857e-03   p_cons 2.953607e-01   p_joint 1.997500e-02

Joint ci ratio: 5.098612e-02	ci left: 1.946630e-02	ci right 2.048816e-02	k: 5792	n:290000
Cons ci ratio: 1.124196e-02	ci left: 2.937468e-01	ci right 2.970711e-01	k: 85668	n:290000
KS ci ratio: 1.186191e-01	ci left: 3.529116e-03	ci right 3.977443e-03	k: 1087	n:290000
CLEC7A   290000 perm   82 sec   (3549 perm/sec)   p_kst 3.748276e-03   p_cons 2.954069e-01   p_joint 1.997241e-02

Joint ci ratio: 5.016230e-02	ci left: 1.944932e-02	ci right 2.045332e-02	k: 5984	n:300000
Cons ci ratio: 1.105045e-02	ci left: 2.938709e-01	ci right 2.971397e-01	k: 88651	n:300000
KS ci ratio: 1.163929e-01	ci left: 3.547366e-03	ci right 3.988972e-03	k: 1129	n:300000
CLEC7A   300000 perm   86 sec   (3500 perm/sec)   p_kst 3.763333e-03   p_cons 2.955033e-01   p_joint 1.994667e-02

Joint ci ratio: 4.934863e-02	ci left: 1.945587e-02	ci right 2.044345e-02	k: 6183	n:310000
Cons ci ratio: 1.086773e-02	ci left: 2.940133e-01	ci right 2.972292e-01	k: 91642	n:310000
KS ci ratio: 1.140923e-01	ci left: 3.577047e-03	ci right 4.012955e-03	k: 1175	n:310000
CLEC7A   310000 perm   90 sec   (3453 perm/sec)   p_kst 3.790323e-03   p_cons 2.956194e-01   p_joint 1.994516e-02

Joint ci ratio: 4.845726e-02	ci left: 1.955478e-02	ci right 2.052894e-02	k: 6412	n:320000
Cons ci ratio: 1.069860e-02	ci left: 2.939600e-01	ci right 2.971250e-01	k: 94573	n:320000
KS ci ratio: 1.123389e-01	ci left: 3.577615e-03	ci right 4.006448e-03	k: 1212	n:320000
CLEC7A   320000 perm   94 sec   (3406 perm/sec)   p_kst 3.787500e-03   p_cons 2.955406e-01   p_joint 2.003750e-02

Joint ci ratio: 4.766010e-02	ci left: 1.960890e-02	ci right 2.056925e-02	k: 6628	n:330000
Cons ci ratio: 1.052962e-02	ci left: 2.942068e-01	ci right 2.973241e-01	k: 97602	n:330000
KS ci ratio: 1.106196e-01	ci left: 3.581144e-03	ci right 4.003401e-03	k: 1250	n:330000
CLEC7A   330000 perm   98 sec   (3359 perm/sec)   p_kst 3.787879e-03   p_cons 2.957636e-01   p_joint 2.008485e-02

Joint ci ratio: 4.692903e-02	ci left: 1.963670e-02	ci right 2.058327e-02	k: 6836	n:340000
Cons ci ratio: 1.037257e-02	ci left: 2.942720e-01	ci right 2.973432e-01	k: 100574	n:340000
KS ci ratio: 1.090618e-01	ci left: 3.578789e-03	ci right 3.994445e-03	k: 1286	n:340000
CLEC7A   340000 perm   103 sec   (3311 perm/sec)   p_kst 3.782353e-03   p_cons 2.958059e-01   p_joint 2.010588e-02

Joint ci ratio: 4.622056e-02	ci left: 1.967150e-02	ci right 2.060504e-02	k: 7047	n:350000
Cons ci ratio: 1.022115e-02	ci left: 2.943824e-01	ci right 2.974096e-01	k: 103563	n:350000
KS ci ratio: 1.070414e-01	ci left: 3.612758e-03	ci right 4.024096e-03	k: 1335	n:350000
CLEC7A   350000 perm   107 sec   (3266 perm/sec)   p_kst 3.814286e-03   p_cons 2.958943e-01   p_joint 2.013429e-02

Joint ci ratio: 4.554323e-02	ci left: 1.970446e-02	ci right 2.062551e-02	k: 7258	n:360000
Cons ci ratio: 1.007859e-02	ci left: 2.943870e-01	ci right 2.973718e-01	k: 106516	n:360000
KS ci ratio: 1.055509e-01	ci left: 3.615153e-03	ci right 4.020676e-03	k: 1373	n:360000
CLEC7A   360000 perm   112 sec   (3221 perm/sec)   p_kst 3.813889e-03   p_cons 2.958778e-01   p_joint 2.016111e-02

Joint ci ratio: 4.496861e-02	ci left: 1.967159e-02	ci right 2.057919e-02	k: 7445	n:370000
Cons ci ratio: 9.943767e-03	ci left: 2.943108e-01	ci right 2.972546e-01	k: 109439	n:370000
KS ci ratio: 1.043437e-01	ci left: 3.601661e-03	ci right 4.000766e-03	k: 1405	n:370000
CLEC7A   370000 perm   116 sec   (3179 perm/sec)   p_kst 3.797297e-03   p_cons 2.957811e-01   p_joint 2.012162e-02

Joint ci ratio: 4.433821e-02	ci left: 1.970819e-02	ci right 2.060441e-02	k: 7658	n:380000
Cons ci ratio: 9.809319e-03	ci left: 2.944464e-01	ci right 2.973515e-01	k: 112441	n:380000
KS ci ratio: 1.027831e-01	ci left: 3.617109e-03	ci right 4.011569e-03	k: 1448	n:380000
CLEC7A   380000 perm   121 sec   (3137 perm/sec)   p_kst 3.810526e-03   p_cons 2.958974e-01   p_joint 2.015263e-02

Joint ci ratio: 4.374777e-02	ci left: 1.973032e-02	ci right 2.061530e-02	k: 7866	n:390000
Cons ci ratio: 9.685245e-03	ci left: 2.943576e-01	ci right 2.972249e-01	k: 115358	n:390000
KS ci ratio: 1.015642e-01	ci left: 3.611812e-03	ci right 4.000745e-03	k: 1483	n:390000
CLEC7A   390000 perm   126 sec   (3099 perm/sec)   p_kst 3.802564e-03   p_cons 2.957897e-01   p_joint 2.016923e-02

Joint ci ratio: 4.318577e-02	ci left: 1.974646e-02	ci right 2.062051e-02	k: 8072	n:400000
Cons ci ratio: 9.565074e-03	ci left: 2.943035e-01	ci right 2.971345e-01	k: 118287	n:400000
KS ci ratio: 1.004541e-01	ci left: 3.601932e-03	ci right 3.985311e-03	k: 1516	n:400000
CLEC7A   400000 perm   131 sec   (3061 perm/sec)   p_kst 3.790000e-03   p_cons 2.957175e-01   p_joint 2.018000e-02

Joint ci ratio: 4.260813e-02	ci left: 1.979568e-02	ci right 2.065990e-02	k: 8292	n:410000
Cons ci ratio: 9.445505e-03	ci left: 2.944178e-01	ci right 2.972143e-01	k: 121284	n:410000
KS ci ratio: 9.886867e-02	ci left: 3.630616e-03	ci right 4.010596e-03	k: 1565	n:410000
CLEC7A   410000 perm   136 sec   (3022 perm/sec)   p_kst 3.817073e-03   p_cons 2.958146e-01   p_joint 2.022439e-02

Outputting figure to mutsig2_images.part000000000039/CLEC7A.2_804_410000_0.0038171_0.29581_0.020224.png
                gene_name: CLEC7A
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 75 percent done.
CLIC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
Cons ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
KS ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
CLIC1   10000 perm   1 sec   (7004 perm/sec)   p_kst 5.555000e-01   p_cons 9.431000e-01   p_joint 9.177000e-01

Outputting figure to mutsig2_images.part000000000039/CLIC1.2_750_10000_0.5555_0.9431_0.9177.png
                gene_name: CLIC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 77 percent done.
CLIC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
CLIC2   10000 perm   1 sec   (6703 perm/sec)   p_kst 5.154000e-01   p_cons 6.310000e-02   p_joint 1.660000e-01

Joint ci ratio: 6.236552e-02	ci left: 1.597810e-01	ci right 1.701166e-01	k: 3298	n:20000
Cons ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
KS ci ratio: 2.685416e-02	ci left: 5.088471e-01	ci right 5.227483e-01	k: 10316	n:20000
CLIC2   20000 perm   3 sec   (5897 perm/sec)   p_kst 5.158000e-01   p_cons 8.990000e-02   p_joint 1.649000e-01

Outputting figure to mutsig2_images.part000000000039/CLIC2.2_768_20000_0.5158_0.0899_0.1649.png
                gene_name: CLIC2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
CLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
CLK1   10000 perm   2 sec   (6206 perm/sec)   p_kst 9.035000e-01   p_cons 1.860000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLK1.2_1633_10000_0.9035_0.186_1.png
                gene_name: CLK1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CLLU1OS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
CLLU1OS   10000 perm   1 sec   (6919 perm/sec)   p_kst 1.765000e-01   p_cons 9.610000e-02   p_joint 8.000000e-02

Joint ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
Cons ci ratio: 8.354924e-02	ci left: 9.499246e-02	ci right 1.033245e-01	k: 1982	n:20000
KS ci ratio: 5.915100e-02	ci left: 1.746973e-01	ci right 1.853959e-01	k: 3600	n:20000
CLLU1OS   20000 perm   3 sec   (6068 perm/sec)   p_kst 1.800000e-01   p_cons 9.910000e-02   p_joint 1.095500e-01

Outputting figure to mutsig2_images.part000000000039/CLLU1OS.2_318_20000_0.18_0.0991_0.10955.png
                gene_name: CLLU1OS
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 83 percent done.
CLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
CLN3   10000 perm   2 sec   (6439 perm/sec)   p_kst 7.311000e-01   p_cons 7.265000e-01   p_joint 9.106000e-01

Outputting figure to mutsig2_images.part000000000039/CLN3.2_1377_10000_0.7311_0.7265_0.9106.png
                gene_name: CLN3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 85 percent done.
CLN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.032079e-02	ci left: 7.800585e-01	ci right 7.961733e-01	k: 7882	n:10000
KS ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
CLN5   10000 perm   2 sec   (6568 perm/sec)   p_kst 7.118000e-01   p_cons 7.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLN5.2_1240_10000_0.7118_0.7882_1.png
                gene_name: CLN5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CLN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
Cons ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
KS ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
CLN8   10000 perm   1 sec   (6835 perm/sec)   p_kst 7.940000e-01   p_cons 7.317000e-01   p_joint 9.970000e-01

Outputting figure to mutsig2_images.part000000000039/CLN8.2_869_10000_0.794_0.7317_0.997.png
                gene_name: CLN8
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 89 percent done.
CLOCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
Cons ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
KS ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
CLOCK   10000 perm   2 sec   (5919 perm/sec)   p_kst 7.608000e-01   p_cons 7.810000e-02   p_joint 1.543000e-01

Joint ci ratio: 4.585633e-02	ci left: 2.614240e-01	ci right 2.737436e-01	k: 5351	n:20000
Cons ci ratio: 9.207096e-02	ci left: 7.926130e-02	ci right 8.696041e-02	k: 1661	n:20000
KS ci ratio: 1.546116e-02	ci left: 7.567410e-01	ci right 7.685825e-01	k: 15254	n:20000
CLOCK   20000 perm   4 sec   (5255 perm/sec)   p_kst 7.627000e-01   p_cons 8.305000e-02   p_joint 2.675500e-01

Outputting figure to mutsig2_images.part000000000039/CLOCK.2_2621_20000_0.7627_0.08305_0.26755.png
                gene_name: CLOCK
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 91 percent done.
CLPTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
Cons ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
CLPTM1   10000 perm   2 sec   (6339 perm/sec)   p_kst 3.414000e-01   p_cons 9.372000e-01   p_joint 4.361000e-01

Outputting figure to mutsig2_images.part000000000039/CLPTM1.2_2066_10000_0.3414_0.9372_0.4361.png
                gene_name: CLPTM1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 92 percent done.
CLPTM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
CLPTM1L   10000 perm   2 sec   (6245 perm/sec)   p_kst 4.653000e-01   p_cons 5.140000e-02   p_joint 5.744000e-01

Joint ci ratio: 5.143560e-02	ci left: 2.192280e-01	ci right 2.308520e-01	k: 4500	n:20000
Cons ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
KS ci ratio: 2.975927e-02	ci left: 4.575686e-01	ci right 4.714418e-01	k: 9290	n:20000
CLPTM1L   20000 perm   4 sec   (5575 perm/sec)   p_kst 4.645000e-01   p_cons 5.375000e-02   p_joint 2.250000e-01

Joint ci ratio: 2.070884e-02	ci left: 5.386102e-01	ci right 5.499145e-01	k: 16328	n:30000
Cons ci ratio: 9.991828e-02	ci left: 4.635659e-02	ci right 5.126460e-02	k: 1463	n:30000
KS ci ratio: 2.445424e-02	ci left: 4.556797e-01	ci right 4.669945e-01	k: 13840	n:30000
CLPTM1L   30000 perm   6 sec   (5292 perm/sec)   p_kst 4.613333e-01   p_cons 4.876667e-02   p_joint 5.442667e-01

Outputting figure to mutsig2_images.part000000000039/CLPTM1L.2_1685_30000_0.46133_0.048767_0.54427.png
                gene_name: CLPTM1L
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 94 percent done.
CLRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
Cons ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
KS ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
CLRN1   10000 perm   1 sec   (6866 perm/sec)   p_kst 4.617000e-01   p_cons 9.556000e-01   p_joint 9.395000e-01

Outputting figure to mutsig2_images.part000000000039/CLRN1.2_765_10000_0.4617_0.9556_0.9395.png
                gene_name: CLRN1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 96 percent done.
CLSTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
KS ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
CLSTN1   10000 perm   2 sec   (5759 perm/sec)   p_kst 6.424000e-01   p_cons 3.944000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLSTN1.2_3022_10000_0.6424_0.3944_1.png
                gene_name: CLSTN1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CLSTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
KS ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
CLSTN3   10000 perm   2 sec   (5706 perm/sec)   p_kst 5.630000e-01   p_cons 3.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLSTN3.2_2943_10000_0.563_0.344_1.png
                gene_name: CLSTN3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000039
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 39 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 4421832: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000040> was used as the working directory.
Started at Wed Oct 24 17:36:49 2012
Results reported at Wed Oct 24 17:52:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000040.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000040.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 40  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000040.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    951.20 sec.
    Max Memory :      5353 MB
    Max Swap   :      7722 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
40
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 40
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 40: processing genes 3529 - 3619
Calculating significance of each gene.
Using projection method.
3529	CLVS1	1
3530	CLVS2	2.914794e-03
3531	CLYBL	2.326630e-01
3532	CMA1	1.081488e-02
3533	CMAS	2.527257e-01
3534	CMBL	7.668736e-01
3535	CMC1	1
3536	CMIP	9.883465e-01
3537	CMKLR1	5.222234e-05
3538	CMPK1	1
3539	CMPK2	3.296547e-02
3540	CMTM1	8.368799e-01
3541	CMTM2	1
3542	CMTM3	1
3543	CMTM4	1
3544	CMTM5	1.085700e-01
3545	CMTM6	1
3546	CMTM7	3.021079e-01
3547	CMTM8	1
3548	CMYA5	9.962072e-01
3549	CNBD1	7.992251e-09
3550	CNBP	7.264182e-01
3551	CNDP1	1
3552	CNDP2	8.916166e-01
3553	CNFN	1
3554	CNGA1	7.738932e-01
3555	CNGA2	7.501197e-04
3556	CNGA3	9.320286e-01
3557	CNGA4	7.367026e-01
3558	CNGB1	9.521172e-01
3559	CNGB3	4.995590e-01
3560	CNIH	1.451478e-02
3561	CNIH2	1
3562	CNIH3	4.833261e-02
3563	CNIH4	1
3564	CNKSR1	3.004263e-01
3565	CNKSR2	2.081626e-03
3566	CNKSR3	9.833194e-01
3567	CNN1	5.392788e-01
3568	CNN2	1
3569	CNN3	1.154763e-01
3570	CNNM1	4.894867e-01
3571	CNNM2	9.702929e-01
3572	CNNM3	1
3573	CNNM4	8.858022e-01
3574	CNO	1.039929e-01
3575	CNOT1	9.995321e-01
3576	CNOT10	6.105594e-01
3577	CNOT2	8.700048e-01
3578	CNOT3	6.726271e-01
3579	CNOT4	1.188062e-01
3580	CNOT6	8.627066e-01
3581	CNOT6L	6.544800e-01
3582	CNOT7	8.902280e-02
3583	CNOT8	1
3584	CNP	5.956283e-01
3585	CNPY1	1
3586	CNPY2	4.459749e-01
3587	CNPY3	5.800963e-01
3588	CNPY4	1
3589	CNR1	2.394432e-01
3590	CNR2	1
3591	CNRIP1	1
3592	CNST	7.211077e-01
3593	CNTD1	1
3594	CNTD2	6.032929e-01
3595	CNTF	5.581980e-01
3596	CNTFR	3.599951e-01
3597	CNTLN	4.041295e-01
3598	CNTN1	1
3599	CNTN2	5.245010e-01
3600	CNTN3	9.907822e-01
3601	CNTN4	8.641259e-01
3602	CNTN5	6.609510e-01
3603	CNTN6	1
3604	CNTNAP1	9.441130e-01
3605	CNTNAP2	9.417878e-02
3606	CNTNAP3	4.296536e-01
3607	CNTNAP4	8.235093e-01
3608	CNTNAP5	1
3609	CNTROB	1
3610	COASY	3.400280e-01
3611	COBL	1.393154e-01
3612	COBLL1	9.428043e-01
3613	COBRA1	4.355865e-01
3614	COCH	9.090997e-01
3615	COG1	9.646695e-01
3616	COG2	9.548587e-01
3617	COG3	8.766888e-01
3618	COG4	9.625108e-01
3619	COG5	8.599158e-01
Done

Running MutSig 2:
Scatter job 40: processing genes 3529 - 3619
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CNTNAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
Cons ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
KS ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
CNTNAP2   10000 perm   3 sec   (3120 perm/sec)   p_kst 1.857000e-01   p_cons 5.233000e-01   p_joint 2.513000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP2.41_4092_10000_0.1857_0.5233_0.2513.png
                gene_name: CNTNAP2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 2 percent done.
CNTNAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
Cons ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
CNTNAP5   10000 perm   3 sec   (3273 perm/sec)   p_kst 7.980000e-02   p_cons 1.009000e-01   p_joint 5.210000e-02

Joint ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
Cons ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
KS ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
CNTNAP5   20000 perm   6 sec   (3117 perm/sec)   p_kst 7.960000e-02   p_cons 1.012500e-01   p_joint 6.955000e-02

Joint ci ratio: 7.594286e-02	ci left: 7.846068e-02	ci right 8.468730e-02	k: 2446	n:30000
Cons ci ratio: 6.482859e-02	ci left: 1.051006e-01	ci right 1.121754e-01	k: 3258	n:30000
KS ci ratio: 7.690508e-02	ci left: 7.662674e-02	ci right 8.278828e-02	k: 2390	n:30000
CNTNAP5   30000 perm   10 sec   (3107 perm/sec)   p_kst 7.966667e-02   p_cons 1.086000e-01   p_joint 8.153333e-02

Outputting figure to mutsig2_images.part000000000040/CNTNAP5.40_4017_30000_0.079667_0.1086_0.081533.png
                gene_name: CNTNAP5
               theta_stop: 0.077 
                    nperm: 30000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.085 

Current progress: 3 percent done.
CNTNAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
Cons ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
KS ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
CNTNAP4   10000 perm   3 sec   (3919 perm/sec)   p_kst 1.200000e-01   p_cons 5.155000e-01   p_joint 2.042000e-01

Joint ci ratio: 5.461841e-02	ci left: 1.991758e-01	ci right 2.104101e-01	k: 4095	n:20000
Cons ci ratio: 2.720574e-02	ci left: 5.023458e-01	ci right 5.162515e-01	k: 10186	n:20000
KS ci ratio: 7.486609e-02	ci left: 1.160187e-01	ci right 1.250920e-01	k: 2410	n:20000
CNTNAP4   20000 perm   6 sec   (3607 perm/sec)   p_kst 1.205000e-01   p_cons 5.093000e-01   p_joint 2.047500e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP4.27_4036_20000_0.1205_0.5093_0.20475.png
                gene_name: CNTNAP4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 5 percent done.
CNTN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
CNTN5   10000 perm   3 sec   (3934 perm/sec)   p_kst 5.868000e-01   p_cons 7.700000e-03   p_joint 4.030000e-02

Joint ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
Cons ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
KS ci ratio: 2.326088e-02	ci left: 5.798884e-01	ci right 5.935864e-01	k: 11735	n:20000
CNTN5   20000 perm   6 sec   (3615 perm/sec)   p_kst 5.867500e-01   p_cons 7.350000e-03   p_joint 5.200000e-02

Joint ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
Cons ci ratio: 2.621136e-01	ci left: 6.430299e-03	ci right 8.400236e-03	k: 221	n:30000
KS ci ratio: 1.901826e-02	ci left: 5.805018e-01	ci right 5.916815e-01	k: 17583	n:30000
CNTN5   30000 perm   9 sec   (3484 perm/sec)   p_kst 5.861000e-01   p_cons 7.366667e-03   p_joint 3.350000e-02

Joint ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
Cons ci ratio: 2.321912e-01	ci left: 6.253518e-03	ci right 7.919248e-03	k: 282	n:40000
KS ci ratio: 1.704746e-02	ci left: 5.644300e-01	ci right 5.741599e-01	k: 22772	n:40000
CNTN5   40000 perm   12 sec   (3395 perm/sec)   p_kst 5.693000e-01   p_cons 7.050000e-03   p_joint 2.442500e-02

Joint ci ratio: 9.988940e-02	ci left: 2.838549e-02	ci right 3.138942e-02	k: 1493	n:50000
Cons ci ratio: 2.038680e-01	ci left: 6.591539e-03	ci right 8.106503e-03	k: 366	n:50000
KS ci ratio: 1.522295e-02	ci left: 5.657467e-01	ci right 5.744452e-01	k: 28505	n:50000
CNTN5   50000 perm   15 sec   (3326 perm/sec)   p_kst 5.701000e-01   p_cons 7.320000e-03   p_joint 2.986000e-02

Joint ci ratio: 8.517183e-02	ci left: 3.264575e-02	ci right 3.556621e-02	k: 2045	n:60000
Cons ci ratio: 1.838890e-01	ci left: 6.825224e-03	ci right 8.223046e-03	k: 450	n:60000
KS ci ratio: 1.387398e-02	ci left: 5.669280e-01	ci right 5.748652e-01	k: 34254	n:60000
CNTN5   60000 perm   18 sec   (3268 perm/sec)   p_kst 5.709000e-01   p_cons 7.500000e-03   p_joint 3.408333e-02

Joint ci ratio: 7.966952e-02	ci left: 3.209518e-02	ci right 3.477225e-02	k: 2339	n:70000
Cons ci ratio: 1.697884e-01	ci left: 6.915246e-03	ci right 8.211790e-03	k: 528	n:70000
KS ci ratio: 1.282351e-02	ci left: 5.680385e-01	ci right 5.753841e-01	k: 40020	n:70000
CNTN5   70000 perm   22 sec   (3217 perm/sec)   p_kst 5.717143e-01   p_cons 7.542857e-03   p_joint 3.341429e-02

Joint ci ratio: 7.708529e-02	ci left: 3.010415e-02	ci right 3.252999e-02	k: 2504	n:80000
Cons ci ratio: 1.582397e-01	ci left: 7.009859e-03	ci right 8.226257e-03	k: 608	n:80000
KS ci ratio: 1.198373e-02	ci left: 5.687502e-01	ci right 5.756195e-01	k: 45775	n:80000
CNTN5   80000 perm   25 sec   (3170 perm/sec)   p_kst 5.721875e-01   p_cons 7.600000e-03   p_joint 3.130000e-02

Joint ci ratio: 7.258541e-02	ci left: 3.024837e-02	ci right 3.253752e-02	k: 2824	n:90000
Cons ci ratio: 1.489846e-01	ci left: 7.064375e-03	ci right 8.212146e-03	k: 686	n:90000
KS ci ratio: 1.127376e-02	ci left: 5.700163e-01	ci right 5.764901e-01	k: 51593	n:90000
CNTN5   90000 perm   29 sec   (3122 perm/sec)   p_kst 5.732556e-01   p_cons 7.622222e-03   p_joint 3.137778e-02

Joint ci ratio: 7.021006e-02	ci left: 2.916760e-02	ci right 3.129976e-02	k: 3022	n:100000
Cons ci ratio: 1.409984e-01	ci left: 7.128947e-03	ci right 8.219901e-03	k: 766	n:100000
KS ci ratio: 1.070389e-02	ci left: 5.697870e-01	ci right 5.759287e-01	k: 57286	n:100000
CNTN5   100000 perm   32 sec   (3083 perm/sec)   p_kst 5.728600e-01   p_cons 7.660000e-03   p_joint 3.022000e-02

Joint ci ratio: 6.196083e-02	ci left: 3.402018e-02	ci right 3.620442e-02	k: 3861	n:110000
Cons ci ratio: 1.317640e-01	ci left: 7.455633e-03	ci right 8.516009e-03	k: 877	n:110000
KS ci ratio: 1.019470e-02	ci left: 5.704617e-01	ci right 5.763162e-01	k: 63073	n:110000
CNTN5   110000 perm   36 sec   (3045 perm/sec)   p_kst 5.733909e-01   p_cons 7.972727e-03   p_joint 3.510000e-02

Joint ci ratio: 6.414384e-02	ci left: 2.921431e-02	ci right 3.115849e-02	k: 3621	n:120000
Cons ci ratio: 1.258777e-01	ci left: 7.511792e-03	ci right 8.528866e-03	k: 961	n:120000
KS ci ratio: 9.746722e-03	ci left: 5.712880e-01	ci right 5.768917e-01	k: 68891	n:120000
CNTN5   120000 perm   40 sec   (3008 perm/sec)   p_kst 5.740917e-01   p_cons 8.008333e-03   p_joint 3.017500e-02

Joint ci ratio: 6.465339e-02	ci left: 2.661016e-02	ci right 2.839561e-02	k: 3574	n:130000
Cons ci ratio: 1.211839e-01	ci left: 7.500512e-03	ci right 8.475473e-03	k: 1037	n:130000
KS ci ratio: 9.358451e-03	ci left: 5.717068e-01	ci right 5.770899e-01	k: 74672	n:130000
CNTN5   130000 perm   44 sec   (2972 perm/sec)   p_kst 5.744000e-01   p_cons 7.976923e-03   p_joint 2.749231e-02

Joint ci ratio: 5.859447e-02	ci left: 3.007011e-02	ci right 3.189224e-02	k: 4336	n:140000
Cons ci ratio: 1.159343e-01	ci left: 7.630174e-03	ci right 8.576083e-03	k: 1133	n:140000
KS ci ratio: 9.011713e-03	ci left: 5.721481e-01	ci right 5.773345e-01	k: 80464	n:140000
CNTN5   140000 perm   48 sec   (2937 perm/sec)   p_kst 5.747429e-01   p_cons 8.092857e-03   p_joint 3.097143e-02

Joint ci ratio: 5.799916e-02	ci left: 2.869551e-02	ci right 3.041607e-02	k: 4432	n:150000
Cons ci ratio: 1.120497e-01	ci left: 7.639626e-03	ci right 8.552875e-03	k: 1213	n:150000
KS ci ratio: 8.709998e-03	ci left: 5.720199e-01	ci right 5.770306e-01	k: 86179	n:150000
CNTN5   150000 perm   52 sec   (2903 perm/sec)   p_kst 5.745267e-01   p_cons 8.086667e-03   p_joint 2.954667e-02

Joint ci ratio: 5.646292e-02	ci left: 2.841742e-02	ci right 3.007470e-02	k: 4678	n:160000
Cons ci ratio: 1.081944e-01	ci left: 7.697014e-03	ci right 8.583448e-03	k: 1301	n:160000
KS ci ratio: 8.428925e-03	ci left: 5.723606e-01	ci right 5.772116e-01	k: 91966	n:160000
CNTN5   160000 perm   56 sec   (2868 perm/sec)   p_kst 5.747875e-01   p_cons 8.131250e-03   p_joint 2.923750e-02

Joint ci ratio: 5.769667e-02	ci left: 2.567203e-02	ci right 2.720300e-02	k: 4493	n:170000
Cons ci ratio: 1.047876e-01	ci left: 7.736666e-03	ci right 8.597881e-03	k: 1387	n:170000
KS ci ratio: 8.176069e-03	ci left: 5.725046e-01	ci right 5.772105e-01	k: 97726	n:170000
CNTN5   170000 perm   60 sec   (2836 perm/sec)   p_kst 5.748588e-01   p_cons 8.158824e-03   p_joint 2.642941e-02

Joint ci ratio: 5.418970e-02	ci left: 2.748393e-02	ci right 2.902021e-02	k: 5084	n:180000
Cons ci ratio: 1.019980e-01	ci left: 7.723564e-03	ci right 8.559060e-03	k: 1464	n:180000
KS ci ratio: 7.942245e-03	ci left: 5.727846e-01	ci right 5.773574e-01	k: 103513	n:180000
CNTN5   180000 perm   64 sec   (2804 perm/sec)   p_kst 5.750722e-01   p_cons 8.133333e-03   p_joint 2.824444e-02

Joint ci ratio: 5.021774e-02	ci left: 3.029280e-02	ci right 3.185839e-02	k: 5903	n:190000
Cons ci ratio: 9.916088e-02	ci left: 7.753182e-03	ci right 8.567195e-03	k: 1549	n:190000
KS ci ratio: 7.740055e-03	ci left: 5.722362e-01	ci right 5.766878e-01	k: 109148	n:190000
CNTN5   190000 perm   69 sec   (2772 perm/sec)   p_kst 5.744632e-01   p_cons 8.152632e-03   p_joint 3.106842e-02

Outputting figure to mutsig2_images.part000000000040/CNTN5.23_3395_190000_0.57446_0.0081526_0.031068.png
                gene_name: CNTN5
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 7 percent done.
CNTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
Cons ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
KS ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
CNTN1   10000 perm   2 sec   (4498 perm/sec)   p_kst 4.732000e-01   p_cons 5.501000e-01   p_joint 6.557000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN1.20_3149_10000_0.4732_0.5501_0.6557.png
                gene_name: CNTN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 8 percent done.
CMYA5
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
KS ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
CMYA5   10000 perm   3 sec   (2988 perm/sec)   p_kst 1.765000e-01   p_cons 9.712000e-01   p_joint 3.029000e-01

Outputting figure to mutsig2_images.part000000000040/CMYA5.16_12262_10000_0.1765_0.9712_0.3029.png
                gene_name: CMYA5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 10 percent done.
CNKSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
CNKSR2   10000 perm   2 sec   (4551 perm/sec)   p_kst 2.110000e-01   p_cons 5.428000e-01   p_joint 3.178000e-01

Outputting figure to mutsig2_images.part000000000040/CNKSR2.16_3202_10000_0.211_0.5428_0.3178.png
                gene_name: CNKSR2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 12 percent done.
CNTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.409876e-02	ci left: 5.594255e-01	ci right 5.789342e-01	k: 5692	n:10000
Cons ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
KS ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
CNTN3   10000 perm   2 sec   (4504 perm/sec)   p_kst 4.067000e-01   p_cons 7.161000e-01   p_joint 5.692000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN3.15_3175_10000_0.4067_0.7161_0.5692.png
                gene_name: CNTN3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 14 percent done.
CNBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
Cons ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
KS ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
CNBD1   10000 perm   2 sec   (5325 perm/sec)   p_kst 3.939000e-01   p_cons 6.430000e-02   p_joint 1.638000e-01

Joint ci ratio: 5.539321e-02	ci left: 1.946732e-01	ci right 2.058141e-01	k: 4004	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 3.413662e-02	ci left: 3.905086e-01	ci right 4.041213e-01	k: 7946	n:20000
CNBD1   20000 perm   4 sec   (4803 perm/sec)   p_kst 3.973000e-01   p_cons 5.605000e-02   p_joint 2.002000e-01

Joint ci ratio: 4.951126e-02	ci left: 1.685369e-01	ci right 1.771265e-01	k: 5184	n:30000
Cons ci ratio: 9.274508e-02	ci left: 5.358768e-02	ci right 5.883202e-02	k: 1685	n:30000
KS ci ratio: 2.777464e-02	ci left: 3.934520e-01	ci right 4.045675e-01	k: 11970	n:30000
CNBD1   30000 perm   7 sec   (4568 perm/sec)   p_kst 3.990000e-01   p_cons 5.616667e-02   p_joint 1.728000e-01

Outputting figure to mutsig2_images.part000000000040/CNBD1.14_1355_30000_0.399_0.056167_0.1728.png
                gene_name: CNBD1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
CNGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
Cons ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
KS ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
CNGA2   10000 perm   2 sec   (4808 perm/sec)   p_kst 4.870000e-02   p_cons 9.670000e-02   p_joint 6.570000e-02

Joint ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
Cons ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
KS ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
CNGA2   20000 perm   5 sec   (4362 perm/sec)   p_kst 5.045000e-02   p_cons 9.530000e-02   p_joint 5.120000e-02

Joint ci ratio: 9.451003e-02	ci left: 5.166456e-02	ci right 5.682220e-02	k: 1626	n:30000
Cons ci ratio: 6.880377e-02	ci left: 9.426417e-02	ci right 1.010140e-01	k: 2928	n:30000
KS ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
CNGA2   30000 perm   7 sec   (4188 perm/sec)   p_kst 4.750000e-02   p_cons 9.760000e-02   p_joint 5.420000e-02

Joint ci ratio: 7.773336e-02	ci left: 5.744674e-02	ci right 6.211742e-02	k: 2390	n:40000
Cons ci ratio: 6.008456e-02	ci left: 9.327793e-02	ci right 9.908084e-02	k: 3846	n:40000
KS ci ratio: 8.714396e-02	ci left: 4.604791e-02	ci right 5.026800e-02	k: 1925	n:40000
CNGA2   40000 perm   10 sec   (4071 perm/sec)   p_kst 4.812500e-02   p_cons 9.615000e-02   p_joint 5.975000e-02

Outputting figure to mutsig2_images.part000000000040/CNGA2.14_2019_40000_0.048125_0.09615_0.05975.png
                gene_name: CNGA2
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 17 percent done.
CNGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
Cons ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
KS ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
CNGB3   10000 perm   2 sec   (4541 perm/sec)   p_kst 2.323000e-01   p_cons 7.290000e-02   p_joint 1.599000e-01

Joint ci ratio: 6.285674e-02	ci left: 1.576584e-01	ci right 1.679398e-01	k: 3255	n:20000
Cons ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
KS ci ratio: 4.818305e-02	ci left: 2.426220e-01	ci right 2.546512e-01	k: 4972	n:20000
CNGB3   20000 perm   5 sec   (4153 perm/sec)   p_kst 2.486000e-01   p_cons 8.230000e-02   p_joint 1.627500e-01

Outputting figure to mutsig2_images.part000000000040/CNGB3.14_2502_20000_0.2486_0.0823_0.16275.png
                gene_name: CNGB3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 19 percent done.
CMKLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
KS ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
CMKLR1   10000 perm   2 sec   (5785 perm/sec)   p_kst 2.354000e-01   p_cons 4.444000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000040/CMKLR1.13_1130_10000_0.2354_0.4444_0.3683.png
                gene_name: CMKLR1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
COBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
Cons ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
KS ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
COBL   10000 perm   2 sec   (4676 perm/sec)   p_kst 3.489000e-01   p_cons 2.486000e-01   p_joint 2.799000e-01

Outputting figure to mutsig2_images.part000000000040/COBL.13_3838_10000_0.3489_0.2486_0.2799.png
                gene_name: COBL
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 22 percent done.
CNTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.881661e-03	ci left: 9.966711e-01	ci right 9.986208e-01	k: 9978	n:10000
KS ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
CNTN4   10000 perm   2 sec   (4153 perm/sec)   p_kst 8.533000e-01   p_cons 9.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNTN4.12_3169_10000_0.8533_0.9978_1.png
                gene_name: CNTN4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CLVS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
CLVS2   10000 perm   2 sec   (5093 perm/sec)   p_kst 7.639000e-01   p_cons 7.780000e-02   p_joint 1.895000e-01

Joint ci ratio: 4.363043e-02	ci left: 2.812337e-01	ci right 2.938281e-01	k: 5750	n:20000
Cons ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
KS ci ratio: 1.548678e-02	ci left: 7.561360e-01	ci right 7.679877e-01	k: 15242	n:20000
CLVS2   20000 perm   4 sec   (4620 perm/sec)   p_kst 7.621000e-01   p_cons 8.080000e-02   p_joint 2.875000e-01

Outputting figure to mutsig2_images.part000000000040/CLVS2.10_1004_20000_0.7621_0.0808_0.2875.png
                gene_name: CLVS2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 25 percent done.
CNOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
Cons ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
KS ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
CNOT1   10000 perm   3 sec   (3698 perm/sec)   p_kst 9.125000e-01   p_cons 2.142000e-01   p_joint 4.570000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT1.10_7545_10000_0.9125_0.2142_0.457.png
                gene_name: CNOT1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 27 percent done.
CNTLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
CNTLN   10000 perm   2 sec   (4314 perm/sec)   p_kst 5.367000e-01   p_cons 9.200000e-03   p_joint 5.710000e-02

Joint ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
Cons ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
KS ci ratio: 2.566646e-02	ci left: 5.314107e-01	ci right 5.452781e-01	k: 10767	n:20000
CNTLN   20000 perm   5 sec   (3929 perm/sec)   p_kst 5.383500e-01   p_cons 9.250000e-03   p_joint 3.300000e-02

Joint ci ratio: 1.309572e-01	ci left: 2.709791e-02	ci right 3.092736e-02	k: 869	n:30000
Cons ci ratio: 2.290713e-01	ci left: 8.559072e-03	ci right 1.080409e-02	k: 289	n:30000
KS ci ratio: 2.112697e-02	ci left: 5.286690e-01	ci right 5.399910e-01	k: 16030	n:30000
CNTLN   30000 perm   8 sec   (3787 perm/sec)   p_kst 5.343333e-01   p_cons 9.633333e-03   p_joint 2.896667e-02

Joint ci ratio: 1.039588e-01	ci left: 3.253782e-02	ci right 3.613020e-02	k: 1372	n:40000
Cons ci ratio: 1.933138e-01	ci left: 9.190906e-03	ci right 1.118117e-02	k: 406	n:40000
KS ci ratio: 1.834854e-02	ci left: 5.280210e-01	ci right 5.378242e-01	k: 21317	n:40000
CNTLN   40000 perm   11 sec   (3694 perm/sec)   p_kst 5.329250e-01   p_cons 1.015000e-02   p_joint 3.430000e-02

Joint ci ratio: 9.224196e-02	ci left: 3.324973e-02	ci right 3.648456e-02	k: 1742	n:50000
Cons ci ratio: 1.716739e-01	ci left: 9.433540e-03	ci right 1.122400e-02	k: 515	n:50000
KS ci ratio: 1.639787e-02	ci left: 5.289553e-01	ci right 5.377208e-01	k: 26667	n:50000
CNTLN   50000 perm   14 sec   (3620 perm/sec)   p_kst 5.333400e-01   p_cons 1.030000e-02   p_joint 3.484000e-02

Joint ci ratio: 8.158585e-02	ci left: 3.553639e-02	ci right 3.857526e-02	k: 2222	n:60000
Cons ci ratio: 1.512802e-01	ci left: 1.022893e-02	ci right 1.191886e-02	k: 663	n:60000
KS ci ratio: 1.492936e-02	ci left: 5.306656e-01	ci right 5.386644e-01	k: 32080	n:60000
CNTLN   60000 perm   17 sec   (3555 perm/sec)   p_kst 5.346667e-01   p_cons 1.105000e-02   p_joint 3.703333e-02

Joint ci ratio: 9.088851e-02	ci left: 2.470794e-02	ci right 2.707444e-02	k: 1811	n:70000
Cons ci ratio: 1.475248e-01	ci left: 9.248613e-03	ci right 1.073529e-02	k: 698	n:70000
KS ci ratio: 1.381943e-02	ci left: 5.310536e-01	ci right 5.384578e-01	k: 37433	n:70000
CNTLN   70000 perm   20 sec   (3495 perm/sec)   p_kst 5.347571e-01   p_cons 9.971429e-03   p_joint 2.587143e-02

Joint ci ratio: 8.195849e-02	ci left: 2.665944e-02	ci right 2.894998e-02	k: 2223	n:80000
Cons ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
KS ci ratio: 1.291315e-02	ci left: 5.318239e-01	ci right 5.387485e-01	k: 42823	n:80000
CNTLN   80000 perm   23 sec   (3439 perm/sec)   p_kst 5.352875e-01   p_cons 1.001250e-02   p_joint 2.778750e-02

Joint ci ratio: 7.741459e-02	ci left: 2.662661e-02	ci right 2.878176e-02	k: 2492	n:90000
Cons ci ratio: 1.297927e-01	ci left: 9.381736e-03	ci right 1.069458e-02	k: 902	n:90000
KS ci ratio: 1.219612e-02	ci left: 5.311456e-01	ci right 5.376744e-01	k: 48097	n:90000
CNTLN   90000 perm   27 sec   (3390 perm/sec)   p_kst 5.344111e-01   p_cons 1.002222e-02   p_joint 2.768889e-02

Joint ci ratio: 7.385431e-02	ci left: 2.638711e-02	ci right 2.842042e-02	k: 2739	n:100000
Cons ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
KS ci ratio: 1.156565e-02	ci left: 5.315125e-01	ci right 5.377055e-01	k: 53461	n:100000
CNTLN   100000 perm   30 sec   (3341 perm/sec)   p_kst 5.346100e-01   p_cons 1.004000e-02   p_joint 2.739000e-02

Joint ci ratio: 7.253589e-02	ci left: 2.492467e-02	ci right 2.680953e-02	k: 2844	n:110000
Cons ci ratio: 1.171165e-01	ci left: 9.491025e-03	ci right 1.068047e-02	k: 1108	n:110000
KS ci ratio: 1.103934e-02	ci left: 5.311194e-01	ci right 5.370242e-01	k: 58748	n:110000
CNTLN   110000 perm   33 sec   (3293 perm/sec)   p_kst 5.340727e-01   p_cons 1.007273e-02   p_joint 2.585455e-02

Joint ci ratio: 6.720963e-02	ci left: 2.663937e-02	ci right 2.850022e-02	k: 3307	n:120000
Cons ci ratio: 1.125456e-01	ci left: 9.444742e-03	ci right 1.057913e-02	k: 1200	n:120000
KS ci ratio: 1.058155e-02	ci left: 5.306724e-01	ci right 5.363259e-01	k: 64020	n:120000
CNTLN   120000 perm   37 sec   (3247 perm/sec)   p_kst 5.335000e-01   p_cons 1.000000e-02   p_joint 2.755833e-02

Joint ci ratio: 6.660422e-02	ci left: 2.508871e-02	ci right 2.682483e-02	k: 3373	n:130000
Cons ci ratio: 1.077996e-01	ci left: 9.526126e-03	ci right 1.061897e-02	k: 1308	n:130000
KS ci ratio: 1.015622e-02	ci left: 5.312837e-01	ci right 5.367148e-01	k: 69420	n:130000
CNTLN   130000 perm   41 sec   (3203 perm/sec)   p_kst 5.340000e-01   p_cons 1.006154e-02   p_joint 2.594615e-02

Joint ci ratio: 5.495301e-02	ci left: 3.410682e-02	ci right 3.604107e-02	k: 4909	n:140000
Cons ci ratio: 1.045810e-01	ci left: 9.415819e-03	ci right 1.046177e-02	k: 1390	n:140000
KS ci ratio: 9.791142e-03	ci left: 5.311612e-01	ci right 5.363945e-01	k: 74729	n:140000
CNTLN   140000 perm   44 sec   (3162 perm/sec)   p_kst 5.337786e-01   p_cons 9.928571e-03   p_joint 3.506429e-02

Joint ci ratio: 5.587831e-02	ci left: 3.087830e-02	ci right 3.265986e-02	k: 4764	n:150000
Cons ci ratio: 1.015647e-01	ci left: 9.333641e-03	ci right 1.033878e-02	k: 1474	n:150000
KS ci ratio: 9.458361e-03	ci left: 5.312915e-01	ci right 5.363472e-01	k: 80073	n:150000
CNTLN   150000 perm   48 sec   (3122 perm/sec)   p_kst 5.338200e-01   p_cons 9.826667e-03   p_joint 3.176000e-02

Joint ci ratio: 5.468258e-02	ci left: 3.026715e-02	ci right 3.197490e-02	k: 4978	n:160000
Cons ci ratio: 9.794222e-02	ci left: 9.426754e-03	ci right 1.040363e-02	k: 1585	n:160000
KS ci ratio: 9.145404e-03	ci left: 5.320584e-01	ci right 5.369528e-01	k: 85521	n:160000
CNTLN   160000 perm   52 sec   (3082 perm/sec)   p_kst 5.345062e-01   p_cons 9.906250e-03   p_joint 3.111250e-02

Outputting figure to mutsig2_images.part000000000040/CNTLN.10_4355_160000_0.53451_0.0099063_0.031113.png
                gene_name: CNTLN
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0094 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 29 percent done.
CNGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
Cons ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
KS ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
CNGA3   10000 perm   2 sec   (4841 perm/sec)   p_kst 2.790000e-01   p_cons 4.529000e-01   p_joint 3.974000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA3.9_2113_10000_0.279_0.4529_0.3974.png
                gene_name: CNGA3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 31 percent done.
CNTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
CNTN2   10000 perm   2 sec   (4536 perm/sec)   p_kst 3.455000e-01   p_cons 3.639000e-01   p_joint 4.666000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN2.9_3211_10000_0.3455_0.3639_0.4666.png
                gene_name: CNTN2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 32 percent done.
CNTN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
CNTN6   10000 perm   2 sec   (4881 perm/sec)   p_kst 9.300000e-01   p_cons 4.965000e-01   p_joint 9.039000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN6.8_3175_10000_0.93_0.4965_0.9039.png
                gene_name: CNTN6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 34 percent done.
CNGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
Cons ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
KS ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
CNGA4   10000 perm   2 sec   (5556 perm/sec)   p_kst 8.440000e-01   p_cons 5.173000e-01   p_joint 7.318000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA4.7_1752_10000_0.844_0.5173_0.7318.png
                gene_name: CNGA4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 36 percent done.
CNN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
CNN3   10000 perm   2 sec   (5431 perm/sec)   p_kst 8.618000e-01   p_cons 2.924000e-01   p_joint 6.879000e-01

Outputting figure to mutsig2_images.part000000000040/CNN3.7_1018_10000_0.8618_0.2924_0.6879.png
                gene_name: CNN3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 37 percent done.
CNOT4
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
Cons ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
KS ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
CNOT4   10000 perm   2 sec   (5114 perm/sec)   p_kst 5.924000e-01   p_cons 1.814000e-01   p_joint 5.128000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT4.5_2065_10000_0.5924_0.1814_0.5128.png
                gene_name: CNOT4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 39 percent done.
CMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
Cons ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
CMA1   10000 perm   2 sec   (5778 perm/sec)   p_kst 1.670000e-02   p_cons 4.096000e-01   p_joint 3.760000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 3.343070e-02	ci left: 4.005294e-01	ci right 4.141976e-01	k: 8147	n:20000
KS ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
CMA1   20000 perm   4 sec   (5198 perm/sec)   p_kst 1.660000e-02   p_cons 4.073500e-01   p_joint 5.720000e-02

Joint ci ratio: 1.123935e-01	ci left: 3.677252e-02	ci right 4.118400e-02	k: 1168	n:30000
Cons ci ratio: 2.709536e-02	ci left: 4.053581e-01	ci right 4.165258e-01	k: 12328	n:30000
KS ci ratio: 1.745493e-01	ci left: 1.508879e-02	ci right 1.800592e-02	k: 495	n:30000
CMA1   30000 perm   6 sec   (4939 perm/sec)   p_kst 1.650000e-02   p_cons 4.109333e-01   p_joint 3.893333e-02

Joint ci ratio: 1.053982e-01	ci left: 3.166062e-02	ci right 3.520754e-02	k: 1336	n:40000
Cons ci ratio: 2.409033e-02	ci left: 3.934726e-01	ci right 4.030922e-01	k: 15931	n:40000
KS ci ratio: 1.521423e-01	ci left: 1.508179e-02	ci right 1.758914e-02	k: 652	n:40000
CMA1   40000 perm   8 sec   (4781 perm/sec)   p_kst 1.630000e-02   p_cons 3.982750e-01   p_joint 3.340000e-02

Joint ci ratio: 1.048393e-01	ci left: 2.577221e-02	ci right 2.864304e-02	k: 1359	n:50000
Cons ci ratio: 2.166888e-02	ci left: 3.912902e-01	ci right 3.998819e-01	k: 19779	n:50000
KS ci ratio: 1.363568e-01	ci left: 1.515025e-02	ci right 1.738642e-02	k: 812	n:50000
CMA1   50000 perm   11 sec   (4634 perm/sec)   p_kst 1.624000e-02   p_cons 3.955800e-01   p_joint 2.718000e-02

Joint ci ratio: 9.603816e-02	ci left: 2.571767e-02	ci right 2.832835e-02	k: 1620	n:60000
Cons ci ratio: 1.977192e-02	ci left: 3.918839e-01	ci right 3.997262e-01	k: 23748	n:60000
KS ci ratio: 1.227359e-01	ci left: 1.568974e-02	ci right 1.775739e-02	k: 1002	n:60000
CMA1   60000 perm   13 sec   (4515 perm/sec)   p_kst 1.670000e-02   p_cons 3.958000e-01   p_joint 2.700000e-02

Joint ci ratio: 8.628105e-02	ci left: 2.740564e-02	ci right 2.989078e-02	k: 2004	n:70000
Cons ci ratio: 1.832667e-02	ci left: 3.916183e-01	ci right 3.988761e-01	k: 27667	n:70000
KS ci ratio: 1.129543e-01	ci left: 1.595806e-02	ci right 1.788229e-02	k: 1183	n:70000
CMA1   70000 perm   16 sec   (4414 perm/sec)   p_kst 1.690000e-02   p_cons 3.952429e-01   p_joint 2.862857e-02

Joint ci ratio: 7.970137e-02	ci left: 2.817898e-02	ci right 3.053032e-02	k: 2347	n:80000
Cons ci ratio: 1.714552e-02	ci left: 3.917848e-01	ci right 3.985728e-01	k: 31614	n:80000
KS ci ratio: 1.056252e-01	ci left: 1.603028e-02	ci right 1.782999e-02	k: 1353	n:80000
CMA1   80000 perm   19 sec   (4323 perm/sec)   p_kst 1.691250e-02   p_cons 3.951750e-01   p_joint 2.933750e-02

Joint ci ratio: 7.630424e-02	ci left: 2.740075e-02	ci right 2.958534e-02	k: 2563	n:90000
Cons ci ratio: 1.617016e-02	ci left: 3.918263e-01	ci right 3.982249e-01	k: 35552	n:90000
KS ci ratio: 9.936073e-02	ci left: 1.615464e-02	ci right 1.785447e-02	k: 1529	n:90000
CMA1   90000 perm   21 sec   (4238 perm/sec)   p_kst 1.698889e-02   p_cons 3.950222e-01   p_joint 2.847778e-02

Outputting figure to mutsig2_images.part000000000040/CMA1.6_764_90000_0.016989_0.39502_0.028478.png
                gene_name: CMA1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 41 percent done.
CNKSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 1.860317e-02	ci left: 8.084670e-01	ci right 8.237484e-01	k: 8162	n:10000
CNKSR1   10000 perm   2 sec   (5245 perm/sec)   p_kst 8.162000e-01   p_cons 6.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNKSR1.6_2226_10000_0.8162_0.6588_1.png
                gene_name: CNKSR1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CNTNAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
CNTNAP3   10000 perm   2 sec   (4897 perm/sec)   p_kst 5.288000e-01   p_cons 5.773000e-01   p_joint 7.322000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP3.6_3963_10000_0.5288_0.5773_0.7322.png
                gene_name: CNTNAP3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 44 percent done.
COG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
Cons ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
COG5   10000 perm   2 sec   (4878 perm/sec)   p_kst 5.657000e-01   p_cons 8.703000e-01   p_joint 8.216000e-01

Outputting figure to mutsig2_images.part000000000040/COG5.6_2675_10000_0.5657_0.8703_0.8216.png
                gene_name: COG5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 46 percent done.
CLYBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
KS ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
CLYBL   10000 perm   2 sec   (5593 perm/sec)   p_kst 3.251000e-01   p_cons 7.030000e-02   p_joint 2.422000e-01

Joint ci ratio: 4.327114e-02	ci left: 2.846113e-01	ci right 2.972495e-01	k: 5818	n:20000
Cons ci ratio: 1.031050e-01	ci left: 6.391463e-02	ci right 7.091178e-02	k: 1347	n:20000
KS ci ratio: 3.963917e-02	ci left: 3.218420e-01	ci right 3.349080e-01	k: 6567	n:20000
CLYBL   20000 perm   4 sec   (5028 perm/sec)   p_kst 3.283500e-01   p_cons 6.735000e-02   p_joint 2.909000e-01

Joint ci ratio: 4.374234e-02	ci left: 2.065267e-01	ci right 2.157960e-01	k: 6334	n:30000
Cons ci ratio: 8.529901e-02	ci left: 6.295458e-02	ci right 6.859654e-02	k: 1972	n:30000
KS ci ratio: 3.240443e-02	ci left: 3.225216e-01	ci right 3.331784e-01	k: 9835	n:30000
CLYBL   30000 perm   6 sec   (4808 perm/sec)   p_kst 3.278333e-01   p_cons 6.573333e-02   p_joint 2.111333e-01

Outputting figure to mutsig2_images.part000000000040/CLYBL.5_1055_30000_0.32783_0.065733_0.21113.png
                gene_name: CLYBL
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 47 percent done.
CMPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
Cons ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
KS ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
CMPK2   10000 perm   2 sec   (5560 perm/sec)   p_kst 1.800000e-02   p_cons 3.367000e-01   p_joint 1.670000e-02

Joint ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
Cons ci ratio: 4.011115e-02	ci left: 3.166695e-01	ci right 3.296819e-01	k: 6463	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
CMPK2   20000 perm   4 sec   (5025 perm/sec)   p_kst 1.920000e-02   p_cons 3.231500e-01   p_joint 2.890000e-02

Joint ci ratio: 1.681158e-01	ci left: 1.630199e-02	ci right 1.932576e-02	k: 533	n:30000
Cons ci ratio: 3.225308e-02	ci left: 3.245796e-01	ci right 3.352534e-01	k: 9897	n:30000
KS ci ratio: 1.595109e-01	ci left: 1.815744e-02	ci right 2.133653e-02	k: 591	n:30000
CMPK2   30000 perm   6 sec   (4791 perm/sec)   p_kst 1.970000e-02   p_cons 3.299000e-01   p_joint 1.776667e-02

Joint ci ratio: 1.864896e-01	ci left: 9.905587e-03	ci right 1.196634e-02	k: 436	n:40000
Cons ci ratio: 2.837910e-02	ci left: 3.183431e-01	ci right 3.275326e-01	k: 12917	n:40000
KS ci ratio: 1.380816e-01	ci left: 1.838475e-02	ci right 2.113559e-02	k: 789	n:40000
CMPK2   40000 perm   9 sec   (4631 perm/sec)   p_kst 1.972500e-02   p_cons 3.229250e-01   p_joint 1.090000e-02

Joint ci ratio: 1.815286e-01	ci left: 8.400834e-03	ci right 1.009688e-02	k: 461	n:50000
Cons ci ratio: 2.533957e-02	ci left: 3.195793e-01	ci right 3.278012e-01	k: 16184	n:50000
KS ci ratio: 1.249644e-01	ci left: 1.809269e-02	ci right 2.052358e-02	k: 964	n:50000
CMPK2   50000 perm   11 sec   (4503 perm/sec)   p_kst 1.928000e-02   p_cons 3.236800e-01   p_joint 9.220000e-03

Joint ci ratio: 1.716556e-01	ci left: 7.876679e-03	ci right 9.371433e-03	k: 516	n:60000
Cons ci ratio: 2.315114e-02	ci left: 3.195743e-01	ci right 3.270761e-01	k: 19399	n:60000
KS ci ratio: 1.136271e-01	ci left: 1.834374e-02	ci right 2.056975e-02	k: 1166	n:60000
CMPK2   60000 perm   14 sec   (4401 perm/sec)   p_kst 1.943333e-02   p_cons 3.233167e-01   p_joint 8.600000e-03

Joint ci ratio: 1.745036e-01	ci left: 6.532365e-03	ci right 7.794720e-03	k: 500	n:70000
Cons ci ratio: 2.140956e-02	ci left: 3.203481e-01	ci right 3.272951e-01	k: 22667	n:70000
KS ci ratio: 1.054158e-01	ci left: 1.834931e-02	ci right 2.040509e-02	k: 1355	n:70000
CMPK2   70000 perm   16 sec   (4306 perm/sec)   p_kst 1.935714e-02   p_cons 3.238143e-01   p_joint 7.142857e-03

Joint ci ratio: 1.372061e-01	ci left: 9.406603e-03	ci right 1.080427e-02	k: 807	n:80000
Cons ci ratio: 2.000870e-02	ci left: 3.209691e-01	ci right 3.274686e-01	k: 25937	n:80000
KS ci ratio: 9.801941e-02	ci left: 1.863842e-02	ci right 2.057164e-02	k: 1567	n:80000
CMPK2   80000 perm   19 sec   (4222 perm/sec)   p_kst 1.958750e-02   p_cons 3.242125e-01   p_joint 1.008750e-02

Joint ci ratio: 1.361828e-01	ci left: 8.500656e-03	ci right 9.753512e-03	k: 820	n:90000
Cons ci ratio: 1.886402e-02	ci left: 3.211643e-01	ci right 3.272915e-01	k: 29180	n:90000
KS ci ratio: 9.244038e-02	ci left: 1.868259e-02	ci right 2.050411e-02	k: 1762	n:90000
CMPK2   90000 perm   22 sec   (4143 perm/sec)   p_kst 1.957778e-02   p_cons 3.242222e-01   p_joint 9.111111e-03

Joint ci ratio: 1.073444e-01	ci left: 1.245310e-02	ci right 1.387535e-02	k: 1315	n:100000
Cons ci ratio: 1.790552e-02	ci left: 3.210895e-01	ci right 3.269007e-01	k: 32399	n:100000
KS ci ratio: 8.719606e-02	ci left: 1.894550e-02	ci right 2.068251e-02	k: 1980	n:100000
CMPK2   100000 perm   25 sec   (4067 perm/sec)   p_kst 1.980000e-02   p_cons 3.239900e-01   p_joint 1.315000e-02

Joint ci ratio: 1.067546e-01	ci left: 1.146224e-02	ci right 1.276367e-02	k: 1331	n:110000
Cons ci ratio: 1.707933e-02	ci left: 3.210440e-01	ci right 3.265835e-01	k: 35619	n:110000
KS ci ratio: 8.275355e-02	ci left: 1.916298e-02	ci right 2.082610e-02	k: 2198	n:110000
CMPK2   110000 perm   28 sec   (3998 perm/sec)   p_kst 1.998182e-02   p_cons 3.238091e-01   p_joint 1.210000e-02

Joint ci ratio: 1.030417e-01	ci left: 1.130225e-02	ci right 1.253817e-02	k: 1429	n:120000
Cons ci ratio: 1.636472e-02	ci left: 3.208283e-01	ci right 3.261302e-01	k: 38817	n:120000
KS ci ratio: 7.887743e-02	ci left: 1.937060e-02	ci right 2.096937e-02	k: 2419	n:120000
CMPK2   120000 perm   31 sec   (3929 perm/sec)   p_kst 2.015833e-02   p_cons 3.234750e-01   p_joint 1.190833e-02

Joint ci ratio: 9.283106e-02	ci left: 1.290225e-02	ci right 1.416574e-02	k: 1758	n:130000
Cons ci ratio: 1.574563e-02	ci left: 3.202969e-01	ci right 3.253879e-01	k: 41969	n:130000
KS ci ratio: 7.585194e-02	ci left: 1.936662e-02	ci right 2.090104e-02	k: 2616	n:130000
CMPK2   130000 perm   34 sec   (3857 perm/sec)   p_kst 2.012308e-02   p_cons 3.228385e-01   p_joint 1.352308e-02

Outputting figure to mutsig2_images.part000000000040/CMPK2.5_1370_130000_0.020123_0.32284_0.013523.png
                gene_name: CMPK2
               theta_stop: 0.093 
                    nperm: 130000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 49 percent done.
CNDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
KS ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
CNDP1   10000 perm   2 sec   (5365 perm/sec)   p_kst 5.188000e-01   p_cons 7.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNDP1.5_1572_10000_0.5188_0.7231_1.png
                gene_name: CNDP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
CNNM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
CNNM4   10000 perm   2 sec   (5777 perm/sec)   p_kst 2.566000e-01   p_cons 3.700000e-03   p_joint 2.050000e-02

Joint ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
Cons ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
KS ci ratio: 4.727834e-02	ci left: 2.497144e-01	ci right 2.618567e-01	k: 5115	n:20000
CNNM4   20000 perm   4 sec   (5178 perm/sec)   p_kst 2.557500e-01   p_cons 3.150000e-03   p_joint 4.265000e-02

Joint ci ratio: 1.410463e-01	ci left: 2.332713e-02	ci right 2.689898e-02	k: 752	n:30000
Cons ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
KS ci ratio: 3.882362e-02	ci left: 2.486842e-01	ci right 2.585636e-01	k: 7608	n:30000
CNNM4   30000 perm   6 sec   (4933 perm/sec)   p_kst 2.536000e-01   p_cons 3.466667e-03   p_joint 2.506667e-02

Joint ci ratio: 1.584250e-01	ci left: 1.387966e-02	ci right 1.629149e-02	k: 602	n:40000
Cons ci ratio: 3.331123e-01	ci left: 2.876268e-03	ci right 4.047646e-03	k: 137	n:40000
KS ci ratio: 3.366082e-02	ci left: 2.489193e-01	ci right 2.574666e-01	k: 10127	n:40000
CNNM4   40000 perm   8 sec   (4785 perm/sec)   p_kst 2.531750e-01   p_cons 3.425000e-03   p_joint 1.505000e-02

Joint ci ratio: 1.388068e-01	ci left: 1.460925e-02	ci right 1.680750e-02	k: 784	n:50000
Cons ci ratio: 2.949577e-01	ci left: 3.001357e-03	ci right 4.057579e-03	k: 175	n:50000
KS ci ratio: 3.006266e-02	ci left: 2.499302e-01	ci right 2.575784e-01	k: 12687	n:50000
CNNM4   50000 perm   11 sec   (4665 perm/sec)   p_kst 2.537400e-01   p_cons 3.500000e-03   p_joint 1.568000e-02

Joint ci ratio: 1.367153e-01	ci left: 1.259186e-02	ci right 1.445563e-02	k: 810	n:60000
Cons ci ratio: 2.706772e-01	ci left: 3.012190e-03	ci right 3.970161e-03	k: 208	n:60000
KS ci ratio: 2.744286e-02	ci left: 2.502717e-01	ci right 2.572521e-01	k: 15225	n:60000
CNNM4   60000 perm   13 sec   (4555 perm/sec)   p_kst 2.537500e-01   p_cons 3.466667e-03   p_joint 1.350000e-02

Joint ci ratio: 1.449293e-01	ci left: 9.592809e-03	ci right 1.110534e-02	k: 723	n:70000
Cons ci ratio: 2.505128e-01	ci left: 3.049267e-03	ci right 3.935534e-03	k: 243	n:70000
KS ci ratio: 2.538386e-02	ci left: 2.508780e-01	ci right 2.573424e-01	k: 17787	n:70000
CNNM4   70000 perm   16 sec   (4445 perm/sec)   p_kst 2.541000e-01   p_cons 3.471429e-03   p_joint 1.032857e-02

Joint ci ratio: 1.103183e-01	ci left: 1.467967e-02	ci right 1.640573e-02	k: 1242	n:80000
Cons ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
KS ci ratio: 2.372342e-02	ci left: 2.514221e-01	ci right 2.574707e-01	k: 20355	n:80000
CNNM4   80000 perm   18 sec   (4352 perm/sec)   p_kst 2.544375e-01   p_cons 3.462500e-03   p_joint 1.552500e-02

Joint ci ratio: 1.110509e-01	ci left: 1.289668e-02	ci right 1.442379e-02	k: 1228	n:90000
Cons ci ratio: 2.215401e-01	ci left: 3.082696e-03	ci right 3.860960e-03	k: 311	n:90000
KS ci ratio: 2.239913e-02	ci left: 2.510478e-01	ci right 2.567458e-01	k: 22850	n:90000
CNNM4   90000 perm   21 sec   (4263 perm/sec)   p_kst 2.538889e-01   p_cons 3.455556e-03   p_joint 1.364444e-02

Joint ci ratio: 1.163166e-01	ci left: 1.057639e-02	ci right 1.189219e-02	k: 1122	n:100000
Cons ci ratio: 2.128582e-01	ci left: 3.020276e-03	ci right 3.748999e-03	k: 337	n:100000
KS ci ratio: 2.128170e-02	ci left: 2.506266e-01	ci right 2.560277e-01	k: 25332	n:100000
CNNM4   100000 perm   24 sec   (4183 perm/sec)   p_kst 2.533200e-01   p_cons 3.370000e-03   p_joint 1.122000e-02

Joint ci ratio: 1.015556e-01	ci left: 1.268451e-02	ci right 1.405041e-02	k: 1469	n:110000
Cons ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
KS ci ratio: 2.027197e-02	ci left: 2.511125e-01	ci right 2.562642e-01	k: 27905	n:110000
CNNM4   110000 perm   27 sec   (4109 perm/sec)   p_kst 2.536818e-01   p_cons 3.318182e-03   p_joint 1.335455e-02

Joint ci ratio: 9.722098e-02	ci left: 1.271640e-02	ci right 1.402394e-02	k: 1603	n:120000
Cons ci ratio: 1.900346e-01	ci left: 3.197552e-03	ci right 3.876789e-03	k: 423	n:120000
KS ci ratio: 1.944099e-02	ci left: 2.506003e-01	ci right 2.555283e-01	k: 30367	n:120000
CNNM4   120000 perm   30 sec   (4038 perm/sec)   p_kst 2.530583e-01   p_cons 3.525000e-03   p_joint 1.335833e-02

Joint ci ratio: 9.711851e-02	ci left: 1.177546e-02	ci right 1.298490e-02	k: 1608	n:130000
Cons ci ratio: 1.820499e-01	ci left: 3.230290e-03	ci right 3.884471e-03	k: 461	n:130000
KS ci ratio: 1.867817e-02	ci left: 2.506998e-01	ci right 2.554342e-01	k: 32898	n:130000
CNNM4   130000 perm   33 sec   (3969 perm/sec)   p_kst 2.530615e-01   p_cons 3.546154e-03   p_joint 1.236923e-02

Joint ci ratio: 9.514834e-02	ci left: 1.140829e-02	ci right 1.255492e-02	k: 1676	n:140000
Cons ci ratio: 1.760571e-01	ci left: 3.217882e-03	ci right 3.845815e-03	k: 493	n:140000
KS ci ratio: 1.800884e-02	ci left: 2.505748e-01	ci right 2.551354e-01	k: 35399	n:140000
CNNM4   140000 perm   36 sec   (3904 perm/sec)   p_kst 2.528500e-01   p_cons 3.521429e-03   p_joint 1.197143e-02

Joint ci ratio: 9.178734e-02	ci left: 1.146160e-02	ci right 1.257071e-02	k: 1801	n:150000
Cons ci ratio: 1.701334e-01	ci left: 3.226583e-03	ci right 3.832857e-03	k: 528	n:150000
KS ci ratio: 1.741527e-02	ci left: 2.502830e-01	ci right 2.546866e-01	k: 37872	n:150000
CNNM4   150000 perm   39 sec   (3841 perm/sec)   p_kst 2.524800e-01   p_cons 3.520000e-03   p_joint 1.200667e-02

Joint ci ratio: 9.536422e-02	ci left: 9.951388e-03	ci right 1.095397e-02	k: 1671	n:160000
Cons ci ratio: 1.647701e-01	ci left: 3.234507e-03	ci right 3.821210e-03	k: 563	n:160000
KS ci ratio: 1.686055e-02	ci left: 2.503913e-01	ci right 2.546551e-01	k: 40403	n:160000
CNNM4   160000 perm   42 sec   (3781 perm/sec)   p_kst 2.525188e-01   p_cons 3.518750e-03   p_joint 1.044375e-02

Joint ci ratio: 9.343813e-02	ci left: 9.768012e-03	ci right 1.073115e-02	k: 1741	n:170000
Cons ci ratio: 1.598840e-01	ci left: 3.241762e-03	ci right 3.810670e-03	k: 598	n:170000
KS ci ratio: 1.635363e-02	ci left: 2.505358e-01	ci right 2.546726e-01	k: 42942	n:170000
CNNM4   170000 perm   46 sec   (3724 perm/sec)   p_kst 2.526000e-01   p_cons 3.517647e-03   p_joint 1.024118e-02

Joint ci ratio: 9.164945e-02	ci left: 9.599767e-03	ci right 1.052723e-02	k: 1810	n:180000
Cons ci ratio: 1.554082e-01	ci left: 3.248440e-03	ci right 3.801074e-03	k: 633	n:180000
KS ci ratio: 1.589617e-02	ci left: 2.505164e-01	ci right 2.545360e-01	k: 45454	n:180000
CNNM4   180000 perm   49 sec   (3670 perm/sec)   p_kst 2.525222e-01   p_cons 3.516667e-03   p_joint 1.005556e-02

Joint ci ratio: 9.203381e-02	ci left: 9.022401e-03	ci right 9.897927e-03	k: 1796	n:190000
Cons ci ratio: 1.519739e-01	ci left: 3.224228e-03	ci right 3.759518e-03	k: 662	n:190000
KS ci ratio: 1.548024e-02	ci left: 2.503744e-01	ci right 2.542857e-01	k: 47942	n:190000
CNNM4   190000 perm   53 sec   (3615 perm/sec)   p_kst 2.523263e-01   p_cons 3.484211e-03   p_joint 9.452632e-03

Joint ci ratio: 9.813388e-02	ci left: 7.526408e-03	ci right 8.307955e-03	k: 1582	n:200000
Cons ci ratio: 1.487577e-01	ci left: 3.202558e-03	ci right 3.721997e-03	k: 691	n:200000
KS ci ratio: 1.509653e-02	ci left: 2.502180e-01	ci right 2.540291e-01	k: 50424	n:200000
CNNM4   200000 perm   56 sec   (3562 perm/sec)   p_kst 2.521200e-01   p_cons 3.455000e-03   p_joint 7.910000e-03

Joint ci ratio: 8.410682e-02	ci left: 9.807282e-03	ci right 1.067298e-02	k: 2149	n:210000
Cons ci ratio: 1.452328e-01	ci left: 3.206006e-03	ci right 3.712614e-03	k: 725	n:210000
KS ci ratio: 1.473406e-02	ci left: 2.502297e-01	ci right 2.539486e-01	k: 52938	n:210000
CNNM4   210000 perm   60 sec   (3511 perm/sec)   p_kst 2.520857e-01   p_cons 3.452381e-03   p_joint 1.023333e-02

Joint ci ratio: 8.306028e-02	ci left: 9.606229e-03	ci right 1.044312e-02	k: 2204	n:220000
Cons ci ratio: 1.418536e-01	ci left: 3.213657e-03	ci right 3.708659e-03	k: 760	n:220000
KS ci ratio: 1.440049e-02	ci left: 2.501369e-01	ci right 2.537696e-01	k: 55429	n:220000
CNNM4   220000 perm   64 sec   (3461 perm/sec)   p_kst 2.519500e-01   p_cons 3.454545e-03   p_joint 1.001818e-02

Joint ci ratio: 7.715000e-02	ci left: 1.067156e-02	ci right 1.153214e-02	k: 2552	n:230000
Cons ci ratio: 1.386998e-01	ci left: 3.220767e-03	ci right 3.704923e-03	k: 795	n:230000
KS ci ratio: 1.408242e-02	ci left: 2.502180e-01	ci right 2.537709e-01	k: 57958	n:230000
CNNM4   230000 perm   67 sec   (3413 perm/sec)   p_kst 2.519913e-01   p_cons 3.456522e-03   p_joint 1.109565e-02

Joint ci ratio: 7.164196e-02	ci left: 1.187922e-02	ci right 1.276595e-02	k: 2956	n:240000
Cons ci ratio: 1.359116e-01	ci left: 3.219345e-03	ci right 3.692772e-03	k: 828	n:240000
KS ci ratio: 1.378271e-02	ci left: 2.503429e-01	ci right 2.538214e-01	k: 60499	n:240000
CNNM4   240000 perm   71 sec   (3367 perm/sec)   p_kst 2.520792e-01   p_cons 3.450000e-03   p_joint 1.231667e-02

Joint ci ratio: 7.003593e-02	ci left: 1.194235e-02	ci right 1.281301e-02	k: 3093	n:250000
Cons ci ratio: 1.335184e-01	ci left: 3.206526e-03	ci right 3.669105e-03	k: 858	n:250000
KS ci ratio: 1.350465e-02	ci left: 2.503668e-01	ci right 2.537749e-01	k: 63017	n:250000
CNNM4   250000 perm   75 sec   (3323 perm/sec)   p_kst 2.520680e-01   p_cons 3.432000e-03   p_joint 1.237200e-02

Joint ci ratio: 6.982477e-02	ci left: 1.155853e-02	ci right 1.239855e-02	k: 3113	n:260000
Cons ci ratio: 1.311734e-01	ci left: 3.198480e-03	ci right 3.651163e-03	k: 889	n:260000
KS ci ratio: 1.324804e-02	ci left: 2.502399e-01	ci right 2.535810e-01	k: 65496	n:260000
CNNM4   260000 perm   79 sec   (3281 perm/sec)   p_kst 2.519077e-01   p_cons 3.419231e-03   p_joint 1.197308e-02

Joint ci ratio: 8.064920e-02	ci left: 8.324102e-03	ci right 9.027247e-03	k: 2341	n:270000
Cons ci ratio: 1.328392e-01	ci left: 3.001207e-03	ci right 3.431788e-03	k: 867	n:270000
KS ci ratio: 1.299670e-02	ci left: 2.503780e-01	ci right 2.536570e-01	k: 68044	n:270000
CNNM4   270000 perm   83 sec   (3238 perm/sec)   p_kst 2.520148e-01   p_cons 3.211111e-03   p_joint 8.670370e-03

Joint ci ratio: 8.050596e-02	ci left: 8.058263e-03	ci right 8.737686e-03	k: 2350	n:280000
Cons ci ratio: 1.304563e-01	ci left: 3.004543e-03	ci right 3.427272e-03	k: 899	n:280000
KS ci ratio: 1.276483e-02	ci left: 2.503392e-01	ci right 2.535588e-01	k: 70545	n:280000
CNNM4   280000 perm   88 sec   (3196 perm/sec)   p_kst 2.519464e-01   p_cons 3.210714e-03   p_joint 8.392857e-03

Joint ci ratio: 8.358295e-02	ci left: 7.212831e-03	ci right 7.845346e-03	k: 2182	n:290000
Cons ci ratio: 1.284740e-01	ci left: 2.994361e-03	ci right 3.408768e-03	k: 927	n:290000
KS ci ratio: 1.253645e-02	ci left: 2.505582e-01	ci right 2.537226e-01	k: 73120	n:290000
CNNM4   290000 perm   92 sec   (3158 perm/sec)   p_kst 2.521379e-01   p_cons 3.196552e-03   p_joint 7.524138e-03

Joint ci ratio: 7.121022e-02	ci left: 9.643753e-03	ci right 1.035909e-02	k: 2999	n:300000
Cons ci ratio: 1.259205e-01	ci left: 3.017188e-03	ci right 3.425835e-03	k: 965	n:300000
KS ci ratio: 1.233123e-02	ci left: 2.504172e-01	ci right 2.535276e-01	k: 75591	n:300000
CNNM4   300000 perm   96 sec   (3121 perm/sec)   p_kst 2.519700e-01   p_cons 3.216667e-03   p_joint 9.996667e-03

Joint ci ratio: 7.171834e-02	ci left: 9.202695e-03	ci right 9.890392e-03	k: 2958	n:310000
Cons ci ratio: 1.233287e-01	ci left: 3.047997e-03	ci right 3.451700e-03	k: 1006	n:310000
KS ci ratio: 1.212197e-02	ci left: 2.507138e-01	ci right 2.537747e-01	k: 78195	n:310000
CNNM4   310000 perm   101 sec   (3080 perm/sec)   p_kst 2.522419e-01   p_cons 3.245161e-03   p_joint 9.541935e-03

Joint ci ratio: 6.462962e-02	ci left: 1.099815e-02	ci right 1.173574e-02	k: 3636	n:320000
Cons ci ratio: 1.215321e-01	ci left: 3.043626e-03	ci right 3.440455e-03	k: 1036	n:320000
KS ci ratio: 1.192913e-02	ci left: 2.507989e-01	ci right 2.538118e-01	k: 80737	n:320000
CNNM4   320000 perm   105 sec   (3042 perm/sec)   p_kst 2.523031e-01   p_cons 3.237500e-03   p_joint 1.136250e-02

Joint ci ratio: 6.352011e-02	ci left: 1.104654e-02	ci right 1.177420e-02	k: 3764	n:330000
Cons ci ratio: 1.199247e-01	ci left: 3.033680e-03	ci right 3.423609e-03	k: 1064	n:330000
KS ci ratio: 1.174285e-02	ci left: 2.509549e-01	ci right 2.539222e-01	k: 83304	n:330000
CNNM4   330000 perm   110 sec   (3004 perm/sec)   p_kst 2.524364e-01   p_cons 3.224242e-03   p_joint 1.140606e-02

Joint ci ratio: 6.464249e-02	ci left: 1.035398e-02	ci right 1.104852e-02	k: 3637	n:340000
Cons ci ratio: 1.180548e-01	ci left: 3.041478e-03	ci right 3.425889e-03	k: 1098	n:340000
KS ci ratio: 1.157468e-02	ci left: 2.507879e-01	ci right 2.537105e-01	k: 85764	n:340000
CNNM4   340000 perm   115 sec   (2968 perm/sec)   p_kst 2.522471e-01   p_cons 3.229412e-03   p_joint 1.069706e-02

Joint ci ratio: 6.465248e-02	ci left: 1.005810e-02	ci right 1.073290e-02	k: 3637	n:350000
Cons ci ratio: 1.163728e-01	ci left: 3.043327e-03	ci right 3.422114e-03	k: 1130	n:350000
KS ci ratio: 1.141327e-02	ci left: 2.506393e-01	ci right 2.535191e-01	k: 88227	n:350000
CNNM4   350000 perm   119 sec   (2934 perm/sec)   p_kst 2.520771e-01   p_cons 3.228571e-03   p_joint 1.039143e-02

Joint ci ratio: 5.983813e-02	ci left: 1.142791e-02	ci right 1.213554e-02	k: 4240	n:360000
Cons ci ratio: 1.149591e-01	ci left: 3.034317e-03	ci right 3.407084e-03	k: 1158	n:360000
KS ci ratio: 1.125727e-02	ci left: 2.505380e-01	ci right 2.533771e-01	k: 90704	n:360000
CNNM4   360000 perm   124 sec   (2900 perm/sec)   p_kst 2.519556e-01   p_cons 3.216667e-03   p_joint 1.177778e-02

Joint ci ratio: 5.997666e-02	ci left: 1.107106e-02	ci right 1.175824e-02	k: 4222	n:370000
Cons ci ratio: 1.132137e-01	ci left: 3.046830e-03	ci right 3.415072e-03	k: 1194	n:370000
KS ci ratio: 1.110208e-02	ci left: 2.506259e-01	ci right 2.534266e-01	k: 93249	n:370000
CNNM4   370000 perm   129 sec   (2866 perm/sec)   p_kst 2.520243e-01   p_cons 3.227027e-03   p_joint 1.141081e-02

Joint ci ratio: 6.026054e-02	ci left: 1.068116e-02	ci right 1.134738e-02	k: 4184	n:380000
Cons ci ratio: 1.122336e-01	ci left: 3.020353e-03	ci right 3.382025e-03	k: 1215	n:380000
KS ci ratio: 1.095436e-02	ci left: 2.506675e-01	ci right 2.534311e-01	k: 95778	n:380000
CNNM4   380000 perm   134 sec   (2833 perm/sec)   p_kst 2.520474e-01   p_cons 3.197368e-03   p_joint 1.101053e-02

Joint ci ratio: 5.624286e-02	ci left: 1.195642e-02	ci right 1.265085e-02	k: 4797	n:390000
Cons ci ratio: 1.106964e-01	ci left: 3.027658e-03	ci right 3.384915e-03	k: 1249	n:390000
KS ci ratio: 1.081643e-02	ci left: 2.505663e-01	ci right 2.532938e-01	k: 98252	n:390000
CNNM4   390000 perm   139 sec   (2801 perm/sec)   p_kst 2.519282e-01   p_cons 3.202564e-03   p_joint 1.230000e-02

Joint ci ratio: 5.582335e-02	ci left: 1.183743e-02	ci right 1.251966e-02	k: 4870	n:400000
Cons ci ratio: 1.095206e-01	ci left: 3.017606e-03	ci right 3.369651e-03	k: 1276	n:400000
KS ci ratio: 1.068337e-02	ci left: 2.504779e-01	ci right 2.531707e-01	k: 100729	n:400000
CNNM4   400000 perm   144 sec   (2771 perm/sec)   p_kst 2.518225e-01   p_cons 3.190000e-03   p_joint 1.217500e-02

Joint ci ratio: 5.471163e-02	ci left: 1.202741e-02	ci right 1.270634e-02	k: 5069	n:410000
Cons ci ratio: 1.082566e-01	ci left: 3.015184e-03	ci right 3.362628e-03	k: 1306	n:410000
KS ci ratio: 1.055195e-02	ci left: 2.505060e-01	ci right 2.531658e-01	k: 103252	n:410000
CNNM4   410000 perm   150 sec   (2740 perm/sec)   p_kst 2.518341e-01   p_cons 3.185366e-03   p_joint 1.236341e-02

Joint ci ratio: 5.452958e-02	ci left: 1.182320e-02	ci right 1.248832e-02	k: 5104	n:420000
Cons ci ratio: 1.068751e-01	ci left: 3.022169e-03	ci right 3.365694e-03	k: 1340	n:420000
KS ci ratio: 1.043213e-02	ci left: 2.502858e-01	ci right 2.529129e-01	k: 105671	n:420000
CNNM4   420000 perm   155 sec   (2712 perm/sec)   p_kst 2.515976e-01   p_cons 3.190476e-03   p_joint 1.215238e-02

Joint ci ratio: 5.408353e-02	ci left: 1.174322e-02	ci right 1.239826e-02	k: 5189	n:430000
Cons ci ratio: 1.057770e-01	ci left: 3.015270e-03	ci right 3.354270e-03	k: 1368	n:430000
KS ci ratio: 1.030775e-02	ci left: 2.503871e-01	ci right 2.529837e-01	k: 108224	n:430000
CNNM4   430000 perm   160 sec   (2684 perm/sec)   p_kst 2.516837e-01   p_cons 3.181395e-03   p_joint 1.206744e-02

Joint ci ratio: 5.465325e-02	ci left: 1.124086e-02	ci right 1.187469e-02	k: 5084	n:440000
Cons ci ratio: 9.952141e-02	ci left: 3.338722e-03	ci right 3.690593e-03	k: 1545	n:440000
KS ci ratio: 1.018760e-02	ci left: 2.504885e-01	ci right 2.530557e-01	k: 110779	n:440000
CNNM4   440000 perm   166 sec   (2656 perm/sec)   p_kst 2.517705e-01   p_cons 3.511364e-03   p_joint 1.155455e-02

Outputting figure to mutsig2_images.part000000000040/CNNM4.5_2356_440000_0.25177_0.0035114_0.011555.png
                gene_name: CNNM4
               theta_stop: 0.100 
                    nperm: 440000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.0035 
      ci_cons_bounds_left: 0.0033 
     ci_cons_bounds_right: 0.0037 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 53 percent done.
CNOT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
Cons ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
KS ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
CNOT7   10000 perm   2 sec   (6054 perm/sec)   p_kst 2.672000e-01   p_cons 3.970000e-01   p_joint 3.365000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT7.5_888_10000_0.2672_0.397_0.3365.png
                gene_name: CNOT7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 54 percent done.
CNST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
Cons ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
KS ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
CNST   10000 perm   2 sec   (5413 perm/sec)   p_kst 2.797000e-01   p_cons 7.466000e-01   p_joint 5.766000e-01

Outputting figure to mutsig2_images.part000000000040/CNST.5_2233_10000_0.2797_0.7466_0.5766.png
                gene_name: CNST
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 56 percent done.
CNTNAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.776107e-02	ci left: 8.221868e-01	ci right 8.370206e-01	k: 8297	n:10000
Cons ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
KS ci ratio: 2.180494e-02	ci left: 7.552478e-01	ci right 7.719984e-01	k: 7637	n:10000
CNTNAP1   10000 perm   2 sec   (4740 perm/sec)   p_kst 7.637000e-01   p_cons 5.057000e-01   p_joint 8.297000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP1.5_4251_10000_0.7637_0.5057_0.8297.png
                gene_name: CNTNAP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 58 percent done.
COASY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
KS ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
COASY   10000 perm   2 sec   (5878 perm/sec)   p_kst 5.240000e-02   p_cons 2.286000e-01   p_joint 8.740000e-02

Joint ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
Cons ci ratio: 5.150945e-02	ci left: 2.187326e-01	ci right 2.303475e-01	k: 4490	n:20000
KS ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
COASY   20000 perm   4 sec   (5245 perm/sec)   p_kst 5.305000e-02   p_cons 2.245000e-01   p_joint 6.620000e-02

Joint ci ratio: 7.988405e-02	ci left: 7.132426e-02	ci right 7.729183e-02	k: 2228	n:30000
Cons ci ratio: 4.219680e-02	ci left: 2.186639e-01	ci right 2.281231e-01	k: 6701	n:30000
KS ci ratio: 9.595276e-02	ci left: 5.016582e-02	ci right 5.525457e-02	k: 1580	n:30000
COASY   30000 perm   6 sec   (5003 perm/sec)   p_kst 5.266667e-02   p_cons 2.233667e-01   p_joint 7.426667e-02

Outputting figure to mutsig2_images.part000000000040/COASY.5_1822_30000_0.052667_0.22337_0.074267.png
                gene_name: COASY
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 59 percent done.
COBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
Cons ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
KS ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
COBLL1   10000 perm   2 sec   (4819 perm/sec)   p_kst 1.651000e-01   p_cons 3.879000e-01   p_joint 2.827000e-01

Outputting figure to mutsig2_images.part000000000040/COBLL1.5_3557_10000_0.1651_0.3879_0.2827.png
                gene_name: COBLL1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
CLVS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
CLVS1   10000 perm   2 sec   (5972 perm/sec)   p_kst 5.184000e-01   p_cons 7.137000e-01   p_joint 6.672000e-01

Outputting figure to mutsig2_images.part000000000040/CLVS1.4_1085_10000_0.5184_0.7137_0.6672.png
                gene_name: CLVS1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 63 percent done.
CNGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
CNGB1   10000 perm   2 sec   (4865 perm/sec)   p_kst 9.331000e-01   p_cons 8.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNGB1.4_3914_10000_0.9331_0.8505_1.png
                gene_name: CNGB1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CNNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
Cons ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
CNNM1   10000 perm   2 sec   (5170 perm/sec)   p_kst 1.460000e-01   p_cons 4.114000e-01   p_joint 1.675000e-01

Outputting figure to mutsig2_images.part000000000040/CNNM1.4_2900_10000_0.146_0.4114_0.1675.png
                gene_name: CNNM1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 66 percent done.
CNOT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
Cons ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
KS ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
CNOT10   10000 perm   2 sec   (5524 perm/sec)   p_kst 7.140000e-01   p_cons 5.212000e-01   p_joint 7.626000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT10.4_2311_10000_0.714_0.5212_0.7626.png
                gene_name: CNOT10
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 68 percent done.
CNOT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
CNOT2   10000 perm   2 sec   (5934 perm/sec)   p_kst 2.700000e-01   p_cons 4.698000e-01   p_joint 2.845000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT2.4_1683_10000_0.27_0.4698_0.2845.png
                gene_name: CNOT2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 69 percent done.
CNR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
CNR1   10000 perm   2 sec   (6128 perm/sec)   p_kst 5.935000e-01   p_cons 3.400000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000040/CNR1.4_1423_10000_0.5935_0.34_0.6519.png
                gene_name: CNR1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 71 percent done.
COBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
Cons ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
COBRA1   10000 perm   2 sec   (5978 perm/sec)   p_kst 6.532000e-01   p_cons 1.270000e-01   p_joint 2.539000e-01

Joint ci ratio: 4.772959e-02	ci left: 2.461431e-01	ci right 2.582290e-01	k: 5043	n:20000
Cons ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
KS ci ratio: 2.111847e-02	ci left: 6.259751e-01	ci right 6.393863e-01	k: 12654	n:20000
COBRA1   20000 perm   4 sec   (5319 perm/sec)   p_kst 6.327000e-01   p_cons 1.281000e-01   p_joint 2.521500e-01

Outputting figure to mutsig2_images.part000000000040/COBRA1.4_1795_20000_0.6327_0.1281_0.25215.png
                gene_name: COBRA1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 73 percent done.
CMAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
Cons ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
KS ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
CMAS   10000 perm   2 sec   (6045 perm/sec)   p_kst 2.782000e-01   p_cons 9.288000e-01   p_joint 3.848000e-01

Outputting figure to mutsig2_images.part000000000040/CMAS.3_1337_10000_0.2782_0.9288_0.3848.png
                gene_name: CMAS
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 75 percent done.
CMTM5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
KS ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
CMTM5   10000 perm   1 sec   (7144 perm/sec)   p_kst 1.899000e-01   p_cons 6.061000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000040/CMTM5.2_491_10000_0.1899_0.6061_0.5927.png
                gene_name: CMTM5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 76 percent done.
CNGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
Cons ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
KS ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
CNGA1   10000 perm   2 sec   (5881 perm/sec)   p_kst 5.390000e-02   p_cons 5.316000e-01   p_joint 1.787000e-01

Joint ci ratio: 4.921721e-02	ci left: 2.348377e-01	ci right 2.467377e-01	k: 4815	n:20000
Cons ci ratio: 2.671473e-02	ci left: 5.114479e-01	ci right 5.253467e-01	k: 10368	n:20000
KS ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
CNGA1   20000 perm   4 sec   (5145 perm/sec)   p_kst 5.480000e-02   p_cons 5.184000e-01   p_joint 2.407500e-01

Joint ci ratio: 5.089379e-02	ci left: 1.608817e-01	ci right 1.693166e-01	k: 4952	n:30000
Cons ci ratio: 2.185235e-02	ci left: 5.118274e-01	ci right 5.231692e-01	k: 15525	n:30000
KS ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
CNGA1   30000 perm   6 sec   (4884 perm/sec)   p_kst 5.330000e-02   p_cons 5.175000e-01   p_joint 1.650667e-01

Outputting figure to mutsig2_images.part000000000040/CNGA1.3_2316_30000_0.0533_0.5175_0.16507.png
                gene_name: CNGA1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
CNIH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
CNIH3   10000 perm   2 sec   (6442 perm/sec)   p_kst 7.104000e-01   p_cons 8.264000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNIH3.3_507_10000_0.7104_0.8264_1.png
                gene_name: CNIH3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CNNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
Cons ci ratio: 6.762478e-02	ci left: 2.429207e-01	ci right 2.600243e-01	k: 2514	n:10000
KS ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
CNNM2   10000 perm   2 sec   (5493 perm/sec)   p_kst 1.211000e-01   p_cons 2.514000e-01   p_joint 1.450000e-01

Joint ci ratio: 5.382621e-02	ci left: 2.039271e-01	ci right 2.152575e-01	k: 4191	n:20000
Cons ci ratio: 4.732184e-02	ci left: 2.493672e-01	ci right 2.615040e-01	k: 5108	n:20000
KS ci ratio: 7.534660e-02	ci left: 1.146907e-01	ci right 1.237203e-01	k: 2383	n:20000
CNNM2   20000 perm   4 sec   (4822 perm/sec)   p_kst 1.191500e-01   p_cons 2.554000e-01   p_joint 2.095500e-01

Outputting figure to mutsig2_images.part000000000040/CNNM2.3_2702_20000_0.11915_0.2554_0.20955.png
                gene_name: CNNM2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 81 percent done.
CNOT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
CNOT3   10000 perm   2 sec   (5493 perm/sec)   p_kst 5.288000e-01   p_cons 2.876000e-01   p_joint 5.680000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT3.3_2330_10000_0.5288_0.2876_0.568.png
                gene_name: CNOT3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
CNOT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
KS ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
CNOT6   10000 perm   2 sec   (6005 perm/sec)   p_kst 9.312000e-01   p_cons 1.560000e-02   p_joint 1.493000e-01

Joint ci ratio: 4.388200e-02	ci left: 2.788994e-01	ci right 2.914631e-01	k: 5703	n:20000
Cons ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
KS ci ratio: 7.745788e-03	ci left: 9.239209e-01	ci right 9.311542e-01	k: 18552	n:20000
CNOT6   20000 perm   4 sec   (5276 perm/sec)   p_kst 9.276000e-01   p_cons 1.495000e-02   p_joint 2.851500e-01

Joint ci ratio: 4.671897e-02	ci left: 1.856073e-01	ci right 1.945195e-01	k: 5701	n:30000
Cons ci ratio: 1.857145e-01	ci left: 1.327321e-02	ci right 1.602196e-02	k: 438	n:30000
KS ci ratio: 6.260924e-03	ci left: 9.259675e-01	ci right 9.318158e-01	k: 27868	n:30000
CNOT6   30000 perm   6 sec   (5026 perm/sec)   p_kst 9.289333e-01   p_cons 1.460000e-02   p_joint 1.900333e-01

Joint ci ratio: 4.555456e-02	ci left: 1.526300e-01	ci right 1.597700e-01	k: 6247	n:40000
Cons ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
KS ci ratio: 5.396536e-03	ci left: 9.269984e-01	ci right 9.320391e-01	k: 37182	n:40000
CNOT6   40000 perm   8 sec   (4851 perm/sec)   p_kst 9.295500e-01   p_cons 1.495000e-02   p_joint 1.561750e-01

Joint ci ratio: 4.086318e-02	ci left: 1.522544e-01	ci right 1.586257e-01	k: 7771	n:50000
Cons ci ratio: 1.405449e-01	ci left: 1.424234e-02	ci right 1.641446e-02	k: 765	n:50000
KS ci ratio: 4.875511e-03	ci left: 9.259225e-01	ci right 9.304676e-01	k: 46411	n:50000
CNOT6   50000 perm   11 sec   (4723 perm/sec)   p_kst 9.282200e-01   p_cons 1.530000e-02   p_joint 1.554200e-01

Joint ci ratio: 3.724235e-02	ci left: 1.529561e-01	ci right 1.587772e-01	k: 9351	n:60000
Cons ci ratio: 1.282429e-01	ci left: 1.434917e-02	ci right 1.633145e-02	k: 919	n:60000
KS ci ratio: 4.429566e-03	ci left: 9.267639e-01	ci right 9.308945e-01	k: 55731	n:60000
CNOT6   60000 perm   13 sec   (4595 perm/sec)   p_kst 9.288500e-01   p_cons 1.531667e-02   p_joint 1.558500e-01

Joint ci ratio: 3.633862e-02	ci left: 1.399465e-01	ci right 1.451403e-01	k: 9977	n:70000
Cons ci ratio: 1.187487e-01	ci left: 1.441758e-02	ci right 1.625149e-02	k: 1072	n:70000
KS ci ratio: 4.091397e-03	ci left: 9.272315e-01	ci right 9.310471e-01	k: 65041	n:70000
CNOT6   70000 perm   16 sec   (4498 perm/sec)   p_kst 9.291571e-01   p_cons 1.531429e-02   p_joint 1.425286e-01

Joint ci ratio: 3.233945e-02	ci left: 1.526475e-01	ci right 1.576776e-01	k: 12412	n:80000
Cons ci ratio: 1.115554e-01	ci left: 1.435140e-02	ci right 1.605902e-02	k: 1215	n:80000
KS ci ratio: 3.812044e-03	ci left: 9.278813e-01	ci right 9.314375e-01	k: 74374	n:80000
CNOT6   80000 perm   18 sec   (4420 perm/sec)   p_kst 9.296750e-01   p_cons 1.518750e-02   p_joint 1.551500e-01

Joint ci ratio: 3.535480e-02	ci left: 1.180491e-01	ci right 1.223088e-01	k: 10815	n:90000
Cons ci ratio: 1.050975e-01	ci left: 1.442160e-02	ci right 1.603209e-02	k: 1369	n:90000
KS ci ratio: 3.598201e-03	ci left: 9.278306e-01	ci right 9.311861e-01	k: 83657	n:90000
CNOT6   90000 perm   21 sec   (4341 perm/sec)   p_kst 9.295222e-01   p_cons 1.521111e-02   p_joint 1.201667e-01

Joint ci ratio: 2.777117e-02	ci left: 1.638278e-01	ci right 1.684515e-01	k: 16613	n:100000
Cons ci ratio: 9.997888e-02	ci left: 1.438250e-02	ci right 1.590581e-02	k: 1513	n:100000
KS ci ratio: 3.403422e-03	ci left: 9.283102e-01	ci right 9.314848e-01	k: 92991	n:100000
CNOT6   100000 perm   23 sec   (4261 perm/sec)   p_kst 9.299100e-01   p_cons 1.513000e-02   p_joint 1.661300e-01

Outputting figure to mutsig2_images.part000000000040/CNOT6.3_1718_100000_0.92991_0.01513_0.16613.png
                gene_name: CNOT6
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 85 percent done.
CNOT6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
CNOT6L   10000 perm   2 sec   (5917 perm/sec)   p_kst 3.872000e-01   p_cons 7.904000e-01   p_joint 4.112000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT6L.3_1716_10000_0.3872_0.7904_0.4112.png
                gene_name: CNOT6L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 86 percent done.
CNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
Cons ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
KS ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
CNP   10000 perm   2 sec   (6075 perm/sec)   p_kst 1.388000e-01   p_cons 6.366000e-01   p_joint 2.805000e-01

Outputting figure to mutsig2_images.part000000000040/CNP.3_1282_10000_0.1388_0.6366_0.2805.png
                gene_name: CNP
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 88 percent done.
CNTFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
Cons ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
CNTFR   10000 perm   2 sec   (6350 perm/sec)   p_kst 4.791000e-01   p_cons 2.950000e-02   p_joint 1.308000e-01

Joint ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
Cons ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
KS ci ratio: 2.891467e-02	ci left: 4.719052e-01	ci right 4.858010e-01	k: 9577	n:20000
CNTFR   20000 perm   4 sec   (5603 perm/sec)   p_kst 4.788500e-01   p_cons 2.845000e-02   p_joint 1.120000e-01

Joint ci ratio: 5.453207e-02	ci left: 1.429118e-01	ci right 1.509567e-01	k: 4407	n:30000
Cons ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
KS ci ratio: 2.354245e-02	ci left: 4.745986e-01	ci right 4.859385e-01	k: 14408	n:30000
CNTFR   30000 perm   6 sec   (5244 perm/sec)   p_kst 4.802667e-01   p_cons 2.900000e-02   p_joint 1.469000e-01

Joint ci ratio: 5.643767e-02	ci left: 1.045793e-01	ci right 1.106777e-01	k: 4304	n:40000
Cons ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
KS ci ratio: 2.046194e-02	ci left: 4.735688e-01	ci right 4.833843e-01	k: 19139	n:40000
CNTFR   40000 perm   8 sec   (5047 perm/sec)   p_kst 4.784750e-01   p_cons 2.952500e-02   p_joint 1.076000e-01

Joint ci ratio: 5.097041e-02	ci left: 1.030774e-01	ci right 1.084885e-01	k: 5288	n:50000
Cons ci ratio: 1.001315e-01	ci left: 2.824890e-02	ci right 3.124603e-02	k: 1486	n:50000
KS ci ratio: 1.828262e-02	ci left: 4.746126e-01	ci right 4.833899e-01	k: 23950	n:50000
CNTFR   50000 perm   10 sec   (4904 perm/sec)   p_kst 4.790000e-01   p_cons 2.972000e-02   p_joint 1.057600e-01

Joint ci ratio: 4.455164e-02	ci left: 1.117315e-01	ci right 1.168392e-01	k: 6856	n:60000
Cons ci ratio: 9.125976e-02	ci left: 2.847020e-02	ci right 3.120886e-02	k: 1789	n:60000
KS ci ratio: 1.669701e-02	ci left: 4.747790e-01	ci right 4.827898e-01	k: 28727	n:60000
CNTFR   60000 perm   13 sec   (4784 perm/sec)   p_kst 4.787833e-01   p_cons 2.981667e-02   p_joint 1.142667e-01

Outputting figure to mutsig2_images.part000000000040/CNTFR.3_1151_60000_0.47878_0.029817_0.11427.png
                gene_name: CNTFR
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 90 percent done.
COG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
Cons ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
KS ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
COG3   10000 perm   2 sec   (5549 perm/sec)   p_kst 2.529000e-01   p_cons 3.431000e-01   p_joint 3.032000e-01

Outputting figure to mutsig2_images.part000000000040/COG3.3_2579_10000_0.2529_0.3431_0.3032.png
                gene_name: COG3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 92 percent done.
CNIH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
Cons ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
KS ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
CNIH   10000 perm   1 sec   (6863 perm/sec)   p_kst 3.998000e-01   p_cons 3.063000e-01   p_joint 6.059000e-01

Outputting figure to mutsig2_images.part000000000040/CNIH.2_455_10000_0.3998_0.3063_0.6059.png
                gene_name: CNIH
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 93 percent done.
CNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
KS ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
CNN1   10000 perm   2 sec   (6572 perm/sec)   p_kst 9.059000e-01   p_cons 7.510000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNN1.2_922_10000_0.9059_0.751_1.png
                gene_name: CNN1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CNO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 5.371559e-02	ci left: 3.380633e-01	ci right 3.568256e-01	k: 3474	n:10000
CNO   10000 perm   1 sec   (7069 perm/sec)   p_kst 3.474000e-01   p_cons 2.490000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
Cons ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
KS ci ratio: 3.833700e-02	ci left: 3.366680e-01	ci right 3.498776e-01	k: 6865	n:20000
CNO   20000 perm   3 sec   (6186 perm/sec)   p_kst 3.432500e-01   p_cons 2.340000e-02   p_joint 5.495000e-02

Joint ci ratio: 1.110173e-01	ci left: 3.768076e-02	ci right 4.214224e-02	k: 1196	n:30000
Cons ci ratio: 1.448399e-01	ci left: 2.210474e-02	ci right 2.558831e-02	k: 714	n:30000
KS ci ratio: 3.146235e-02	ci left: 3.356015e-01	ci right 3.463626e-01	k: 10229	n:30000
CNO   30000 perm   5 sec   (5855 perm/sec)   p_kst 3.409667e-01   p_cons 2.380000e-02   p_joint 3.986667e-02

Joint ci ratio: 9.726032e-02	ci left: 3.712383e-02	ci right 4.094346e-02	k: 1560	n:40000
Cons ci ratio: 1.240648e-01	ci left: 2.283738e-02	ci right 2.588220e-02	k: 973	n:40000
KS ci ratio: 2.732619e-02	ci left: 3.350331e-01	ci right 3.443402e-01	k: 13587	n:40000
CNO   40000 perm   7 sec   (5611 perm/sec)   p_kst 3.396750e-01   p_cons 2.432500e-02   p_joint 3.900000e-02

Joint ci ratio: 8.676714e-02	ci left: 3.751573e-02	ci right 4.093804e-02	k: 1960	n:50000
Cons ci ratio: 1.099759e-01	ci left: 2.341559e-02	ci right 2.615996e-02	k: 1238	n:50000
KS ci ratio: 2.442386e-02	ci left: 3.358472e-01	ci right 3.441714e-01	k: 17000	n:50000
CNO   50000 perm   9 sec   (5414 perm/sec)   p_kst 3.400000e-01   p_cons 2.476000e-02   p_joint 3.920000e-02

Joint ci ratio: 7.919331e-02	ci left: 3.767748e-02	ci right 4.080062e-02	k: 2353	n:60000
Cons ci ratio: 1.004217e-01	ci left: 2.352156e-02	ci right 2.602470e-02	k: 1485	n:60000
KS ci ratio: 2.226705e-02	ci left: 3.367908e-01	ci right 3.443913e-01	k: 20435	n:60000
CNO   60000 perm   11 sec   (5251 perm/sec)   p_kst 3.405833e-01   p_cons 2.475000e-02   p_joint 3.921667e-02

Joint ci ratio: 7.890523e-02	ci left: 3.271170e-02	ci right 3.541282e-02	k: 2383	n:70000
Cons ci ratio: 9.379873e-02	ci left: 2.319985e-02	ci right 2.549695e-02	k: 1703	n:70000
KS ci ratio: 2.067970e-02	ci left: 3.356781e-01	ci right 3.427066e-01	k: 23743	n:70000
CNO   70000 perm   14 sec   (5118 perm/sec)   p_kst 3.391857e-01   p_cons 2.432857e-02   p_joint 3.404286e-02

Outputting figure to mutsig2_images.part000000000040/CNO.2_658_70000_0.33919_0.024329_0.034043.png
                gene_name: CNO
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 97 percent done.
COG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.416207e-02	ci left: 4.308381e-01	ci right 4.503965e-01	k: 4406	n:10000
KS ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
COG1   10000 perm   2 sec   (5645 perm/sec)   p_kst 6.517000e-01   p_cons 4.406000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/COG1.2_2999_10000_0.6517_0.4406_1.png
                gene_name: COG1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
COG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
KS ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
COG4   10000 perm   2 sec   (5921 perm/sec)   p_kst 3.959000e-01   p_cons 2.878000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/COG4.2_2446_10000_0.3959_0.2878_1.png
                gene_name: COG4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000040
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 40 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 4421836: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000041> was used as the working directory.
Started at Wed Oct 24 17:36:49 2012
Results reported at Wed Oct 24 18:00:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000041.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000041.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 41  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000041.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1428.97 sec.
    Max Memory :      5365 MB
    Max Swap   :      7718 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
41
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 41
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 41: processing genes 3620 - 3709
Calculating significance of each gene.
Using projection method.
3620	COG6	9.752074e-01
3621	COG7	9.627551e-01
3622	COG8	1
3623	COIL	8.236332e-01
3624	COL10A1	8.654361e-01
3625	COL11A1	1
3626	COL11A2	9.999255e-01
3627	COL12A1	9.999839e-01
3628	COL13A1	5.827717e-01
3629	COL14A1	9.985930e-01
3630	COL15A1	8.511947e-01
3631	COL16A1	9.998460e-01
3632	COL17A1	9.979671e-01
3633	COL18A1	1
3634	COL19A1	4.952865e-01
3635	COL1A1	9.883788e-01
3636	COL1A2	9.316860e-01
3637	COL20A1	5.306097e-01
3638	COL21A1	9.244573e-01
3639	COL22A1	1
3640	COL23A1	8.036409e-01
3641	COL24A1	9.809243e-01
3642	COL25A1	9.544790e-04
3643	COL27A1	9.996115e-01
3644	COL28A1	8.882511e-01
3645	COL2A1	9.574518e-01
3646	COL3A1	7.760160e-01
3647	COL4A1	1
In gene COL4A2 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 4822    n = 1	mu =   4.02e-07
3648	COL4A2	9.573727e-01
3649	COL4A3	9.999762e-01
3650	COL4A3BP	1
3651	COL4A4	8.714289e-01
3652	COL4A5	9.987912e-01
3653	COL4A6	1
3654	COL5A1	6.110029e-01
3655	COL5A2	9.966407e-01
3656	COL5A3	9.809504e-01
3657	COL6A1	9.642179e-01
3658	COL6A2	9.583167e-01
3659	COL6A3	8.851631e-01
3660	COL6A5	1
3661	COL6A6	9.790748e-01
3662	COL7A1	1
3663	COL8A1	9.659073e-01
3664	COL8A2	9.136884e-01
3665	COL9A1	2.289013e-01
3666	COL9A2	8.162534e-01
3667	COL9A3	1
3668	COLEC10	1
3669	COLEC11	1
3670	COLEC12	9.486947e-01
3671	COLQ	5.674392e-01
3672	COMMD1	6.176810e-01
3673	COMMD10	1.479774e-01
3674	COMMD2	1.450346e-01
3675	COMMD3	3.107473e-01
3676	COMMD4	4.751101e-01
3677	COMMD5	1
3678	COMMD6	1
3679	COMMD7	6.258084e-01
3680	COMMD8	1.036578e-01
3681	COMMD9	1
3682	COMP	8.803900e-01
3683	COMT	1
3684	COMTD1	1
In gene COPA the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 3834    n = 1	mu =   4.02e-07
3685	COPA	9.860369e-01
3686	COPB1	4.619378e-01
3687	COPB2	9.887079e-01
3688	COPE	1
3689	COPG	9.297489e-01
3690	COPG2	3.545034e-01
3691	COPS2	2.452537e-01
3692	COPS3	6.348831e-01
3693	COPS4	8.000869e-01
3694	COPS5	8.492452e-01
3695	COPS6	8.997881e-01
3696	COPS7A	6.965702e-01
3697	COPS7B	4.181512e-01
3698	COPS8	1
3699	COPZ1	2.745091e-01
3700	COPZ2	5.643094e-01
3701	COQ10A	5.380138e-01
3702	COQ10B	5.727355e-01
3703	COQ2	1
3704	COQ3	5.418687e-01
3705	COQ4	7.594030e-01
3706	COQ5	5.380912e-01
3707	COQ6	2.989379e-01
3708	COQ7	5.332477e-01
In gene COQ9 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 916     n = 1	mu =   5.69e-07
3709	COQ9	6.373364e-01
Done

Running MutSig 2:
Scatter job 41: processing genes 3620 - 3709
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
COL11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.366378e-02	ci left: 2.660670e-01	ci right 2.836643e-01	k: 2748	n:10000
Cons ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
KS ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
COL11A1   10000 perm   4 sec   (2621 perm/sec)   p_kst 8.691000e-01   p_cons 1.244000e-01   p_joint 2.748000e-01

Joint ci ratio: 4.655673e-02	ci left: 2.555685e-01	ci right 2.678009e-01	k: 5233	n:20000
Cons ci ratio: 7.379127e-02	ci left: 1.190686e-01	ci right 1.282411e-01	k: 2472	n:20000
KS ci ratio: 1.075358e-02	ci left: 8.644483e-01	ci right 8.738441e-01	k: 17384	n:20000
COL11A1   20000 perm   10 sec   (1936 perm/sec)   p_kst 8.692000e-01   p_cons 1.236000e-01   p_joint 2.616500e-01

Outputting figure to mutsig2_images.part000000000041/COL11A1.66_5846_20000_0.8692_0.1236_0.26165.png
                gene_name: COL11A1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 2 percent done.
COL6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
Cons ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
COL6A3   10000 perm   3 sec   (3114 perm/sec)   p_kst 3.911000e-01   p_cons 9.861000e-01   p_joint 6.046000e-01

Outputting figure to mutsig2_images.part000000000041/COL6A3.35_9753_10000_0.3911_0.9861_0.6046.png
                gene_name: COL6A3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 3 percent done.
COL22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
COL22A1   10000 perm   3 sec   (3290 perm/sec)   p_kst 3.147000e-01   p_cons 3.460000e-01   p_joint 3.343000e-01

Outputting figure to mutsig2_images.part000000000041/COL22A1.33_5137_10000_0.3147_0.346_0.3343.png
                gene_name: COL22A1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 5 percent done.
COL3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
Cons ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
KS ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
COL3A1   10000 perm   3 sec   (3320 perm/sec)   p_kst 8.138000e-01   p_cons 7.806000e-01   p_joint 8.847000e-01

Outputting figure to mutsig2_images.part000000000041/COL3A1.33_4605_10000_0.8138_0.7806_0.8847.png
                gene_name: COL3A1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 7 percent done.
COL5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
Cons ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
COL5A2   10000 perm   3 sec   (3532 perm/sec)   p_kst 6.280000e-02   p_cons 8.840000e-02   p_joint 9.350000e-02

Joint ci ratio: 1.038922e-01	ci left: 6.298759e-02	ci right 6.993910e-02	k: 1328	n:20000
Cons ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
KS ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
COL5A2   20000 perm   6 sec   (3343 perm/sec)   p_kst 6.270000e-02   p_cons 8.815000e-02   p_joint 6.640000e-02

Joint ci ratio: 9.475660e-02	ci left: 5.140387e-02	ci right 5.654961e-02	k: 1618	n:30000
Cons ci ratio: 7.308563e-02	ci left: 8.429313e-02	ci right 9.072035e-02	k: 2624	n:30000
KS ci ratio: 8.737952e-02	ci left: 6.011316e-02	ci right 6.563853e-02	k: 1885	n:30000
COL5A2   30000 perm   9 sec   (3250 perm/sec)   p_kst 6.283333e-02   p_cons 8.746667e-02   p_joint 5.393333e-02

Outputting figure to mutsig2_images.part000000000041/COL5A2.30_4716_30000_0.062833_0.087467_0.053933.png
                gene_name: COL5A2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.057 

Current progress: 9 percent done.
COL19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
KS ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
COL19A1   10000 perm   3 sec   (3754 perm/sec)   p_kst 2.878000e-01   p_cons 4.671000e-01   p_joint 5.213000e-01

Outputting figure to mutsig2_images.part000000000041/COL19A1.28_3629_10000_0.2878_0.4671_0.5213.png
                gene_name: COL19A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
COL12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
Cons ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
KS ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
COL12A1   10000 perm   3 sec   (3193 perm/sec)   p_kst 4.613000e-01   p_cons 2.185000e-01   p_joint 4.235000e-01

Outputting figure to mutsig2_images.part000000000041/COL12A1.27_9452_10000_0.4613_0.2185_0.4235.png
                gene_name: COL12A1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 12 percent done.
COL7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
KS ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
COL7A1   10000 perm   3 sec   (3374 perm/sec)   p_kst 3.740000e-02   p_cons 4.060000e-02   p_joint 1.020000e-02

Joint ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
Cons ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
KS ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
COL7A1   20000 perm   6 sec   (3159 perm/sec)   p_kst 3.610000e-02   p_cons 3.735000e-02   p_joint 1.345000e-02

Joint ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
Cons ci ratio: 1.104896e-01	ci left: 3.803765e-02	ci right 4.251860e-02	k: 1207	n:30000
KS ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
COL7A1   30000 perm   10 sec   (3004 perm/sec)   p_kst 3.773333e-02   p_cons 4.023333e-02   p_joint 3.786667e-02

Joint ci ratio: 1.664551e-01	ci left: 1.253581e-02	ci right 1.483559e-02	k: 546	n:40000
Cons ci ratio: 1.004150e-01	ci left: 3.485420e-02	ci right 3.856345e-02	k: 1467	n:40000
KS ci ratio: 9.888669e-02	ci left: 3.592777e-02	ci right 3.968971e-02	k: 1511	n:40000
COL7A1   40000 perm   14 sec   (2958 perm/sec)   p_kst 3.777500e-02   p_cons 3.667500e-02   p_joint 1.365000e-02

Joint ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
Cons ci ratio: 9.017185e-02	ci left: 3.477538e-02	ci right 3.807872e-02	k: 1820	n:50000
KS ci ratio: 8.908593e-02	ci left: 3.561679e-02	ci right 3.895720e-02	k: 1863	n:50000
COL7A1   50000 perm   17 sec   (2915 perm/sec)   p_kst 3.726000e-02   p_cons 3.640000e-02   p_joint 1.020000e-02

Joint ci ratio: 1.749275e-01	ci left: 7.573644e-03	ci right 9.041179e-03	k: 497	n:60000
Cons ci ratio: 8.216332e-02	ci left: 3.504626e-02	ci right 3.806544e-02	k: 2192	n:60000
KS ci ratio: 8.070398e-02	ci left: 3.630441e-02	ci right 3.937383e-02	k: 2269	n:60000
COL7A1   60000 perm   21 sec   (2874 perm/sec)   p_kst 3.781667e-02   p_cons 3.653333e-02   p_joint 8.283333e-03

Joint ci ratio: 1.114789e-01	ci left: 1.638868e-02	ci right 1.833733e-02	k: 1214	n:70000
Cons ci ratio: 7.616902e-02	ci left: 3.506678e-02	ci right 3.785753e-02	k: 2551	n:70000
KS ci ratio: 7.483991e-02	ci left: 3.630105e-02	ci right 3.913743e-02	k: 2639	n:70000
COL7A1   70000 perm   25 sec   (2836 perm/sec)   p_kst 3.770000e-02   p_cons 3.644286e-02   p_joint 1.734286e-02

Joint ci ratio: 1.092518e-01	ci left: 1.497155e-02	ci right 1.671382e-02	k: 1266	n:80000
Cons ci ratio: 7.097948e-02	ci left: 3.541994e-02	ci right 3.803879e-02	k: 2937	n:80000
KS ci ratio: 7.043376e-02	ci left: 3.596057e-02	ci right 3.859812e-02	k: 2981	n:80000
COL7A1   80000 perm   29 sec   (2803 perm/sec)   p_kst 3.726250e-02   p_cons 3.671250e-02   p_joint 1.582500e-02

Joint ci ratio: 1.105504e-01	ci left: 1.301556e-02	ci right 1.454935e-02	k: 1239	n:90000
Cons ci ratio: 6.724021e-02	ci left: 3.516398e-02	ci right 3.762157e-02	k: 3274	n:90000
KS ci ratio: 6.643392e-02	ci left: 3.600576e-02	ci right 3.849085e-02	k: 3351	n:90000
COL7A1   90000 perm   33 sec   (2758 perm/sec)   p_kst 3.723333e-02   p_cons 3.637778e-02   p_joint 1.376667e-02

Joint ci ratio: 1.121015e-01	ci left: 1.140237e-02	ci right 1.276615e-02	k: 1207	n:100000
Cons ci ratio: 6.358948e-02	ci left: 3.544462e-02	ci right 3.778236e-02	k: 3660	n:100000
KS ci ratio: 6.300233e-02	ci left: 3.609456e-02	ci right 3.845238e-02	k: 3726	n:100000
COL7A1   100000 perm   37 sec   (2724 perm/sec)   p_kst 3.726000e-02   p_cons 3.660000e-02   p_joint 1.207000e-02

Joint ci ratio: 1.141881e-01	ci left: 9.994362e-03	ci right 1.121347e-02	k: 1165	n:110000
Cons ci ratio: 6.052965e-02	ci left: 3.561447e-02	ci right 3.784641e-02	k: 4039	n:110000
KS ci ratio: 6.006811e-02	ci left: 3.615200e-02	ci right 3.839975e-02	k: 4099	n:110000
COL7A1   110000 perm   41 sec   (2692 perm/sec)   p_kst 3.726364e-02   p_cons 3.671818e-02   p_joint 1.059091e-02

Joint ci ratio: 1.140910e-01	ci left: 9.185565e-03	ci right 1.030499e-02	k: 1168	n:120000
Cons ci ratio: 5.818803e-02	ci left: 3.538028e-02	ci right 3.750887e-02	k: 4372	n:120000
KS ci ratio: 5.748901e-02	ci left: 3.622665e-02	ci right 3.837911e-02	k: 4475	n:120000
COL7A1   120000 perm   45 sec   (2661 perm/sec)   p_kst 3.729167e-02   p_cons 3.643333e-02   p_joint 9.733333e-03

Joint ci ratio: 9.811114e-02	ci left: 1.153525e-02	ci right 1.273282e-02	k: 1576	n:130000
Cons ci ratio: 5.592007e-02	ci left: 3.540362e-02	ci right 3.744790e-02	k: 4734	n:130000
KS ci ratio: 5.516871e-02	ci left: 3.635229e-02	ci right 3.842225e-02	k: 4859	n:130000
COL7A1   130000 perm   49 sec   (2634 perm/sec)   p_kst 3.737692e-02   p_cons 3.641538e-02   p_joint 1.212308e-02

Outputting figure to mutsig2_images.part000000000041/COL7A1.25_9307_130000_0.037377_0.036415_0.012123.png
                gene_name: COL7A1
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 14 percent done.
COL6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
COL6A6   10000 perm   3 sec   (3162 perm/sec)   p_kst 1.140000e-02   p_cons 4.156000e-01   p_joint 3.820000e-02

Joint ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
Cons ci ratio: 3.383559e-02	ci left: 3.947459e-01	ci right 4.083828e-01	k: 8031	n:20000
KS ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
COL6A6   20000 perm   7 sec   (2983 perm/sec)   p_kst 1.155000e-02   p_cons 4.015500e-01   p_joint 3.290000e-02

Joint ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
Cons ci ratio: 2.675137e-02	ci left: 4.115452e-01	ci right 4.227375e-01	k: 12514	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
COL6A6   30000 perm   10 sec   (2898 perm/sec)   p_kst 1.223333e-02   p_cons 4.171333e-01   p_joint 3.490000e-02

Joint ci ratio: 1.220878e-01	ci left: 2.358907e-02	ci right 2.668039e-02	k: 1004	n:40000
Cons ci ratio: 2.309205e-02	ci left: 4.138838e-01	ci right 4.235780e-01	k: 16749	n:40000
KS ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
COL6A6   40000 perm   14 sec   (2842 perm/sec)   p_kst 1.220000e-02   p_cons 4.187250e-01   p_joint 2.510000e-02

Joint ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
Cons ci ratio: 2.062066e-02	ci left: 4.151893e-01	ci right 4.238600e-01	k: 20976	n:50000
KS ci ratio: 1.589347e-01	ci left: 1.106401e-02	ci right 1.299327e-02	k: 600	n:50000
COL6A6   50000 perm   18 sec   (2801 perm/sec)   p_kst 1.200000e-02   p_cons 4.195200e-01   p_joint 2.800000e-02

Joint ci ratio: 9.649801e-02	ci left: 2.547354e-02	ci right 2.807251e-02	k: 1605	n:60000
Cons ci ratio: 1.888168e-02	ci left: 4.140824e-01	ci right 4.219922e-01	k: 25082	n:60000
KS ci ratio: 1.454140e-01	ci left: 1.109588e-02	ci right 1.285180e-02	k: 717	n:60000
COL6A6   60000 perm   22 sec   (2764 perm/sec)   p_kst 1.195000e-02   p_cons 4.180333e-01   p_joint 2.675000e-02

Joint ci ratio: 9.849139e-02	ci left: 2.103761e-02	ci right 2.323083e-02	k: 1548	n:70000
Cons ci ratio: 1.802410e-02	ci left: 3.995916e-01	ci right 4.068736e-01	k: 28226	n:70000
KS ci ratio: 1.337148e-01	ci left: 1.131701e-02	ci right 1.295237e-02	k: 848	n:70000
COL6A6   70000 perm   26 sec   (2725 perm/sec)   p_kst 1.211429e-02   p_cons 4.032286e-01   p_joint 2.211429e-02

Joint ci ratio: 1.000562e-01	ci left: 1.788227e-02	ci right 1.977785e-02	k: 1505	n:80000
Cons ci ratio: 1.691373e-02	ci left: 3.983002e-01	ci right 4.051069e-01	k: 32136	n:80000
KS ci ratio: 1.231210e-01	ci left: 1.174158e-02	ci right 1.329407e-02	k: 1000	n:80000
COL6A6   80000 perm   30 sec   (2680 perm/sec)   p_kst 1.250000e-02   p_cons 4.017000e-01   p_joint 1.881250e-02

Joint ci ratio: 8.145248e-02	ci left: 2.406601e-02	ci right 2.612031e-02	k: 2257	n:90000
Cons ci ratio: 1.609635e-02	ci left: 3.940121e-01	ci right 4.004168e-01	k: 35749	n:90000
KS ci ratio: 1.159299e-01	ci left: 1.181671e-02	ci right 1.328162e-02	k: 1128	n:90000
COL6A6   90000 perm   34 sec   (2640 perm/sec)   p_kst 1.253333e-02   p_cons 3.972111e-01   p_joint 2.507778e-02

Joint ci ratio: 8.174264e-02	ci left: 2.156029e-02	ci right 2.340755e-02	k: 2247	n:100000
Cons ci ratio: 1.542262e-02	ci left: 3.894417e-01	ci right 3.955045e-01	k: 39247	n:100000
KS ci ratio: 1.097350e-01	ci left: 1.190811e-02	ci right 1.330037e-02	k: 1259	n:100000
COL6A6   100000 perm   38 sec   (2613 perm/sec)   p_kst 1.259000e-02   p_cons 3.924700e-01   p_joint 2.247000e-02

Joint ci ratio: 7.658394e-02	ci left: 2.237196e-02	ci right 2.416239e-02	k: 2558	n:110000
Cons ci ratio: 1.472363e-02	ci left: 3.889771e-01	ci right 3.947558e-01	k: 43105	n:110000
KS ci ratio: 1.048199e-01	ci left: 1.189605e-02	ci right 1.322075e-02	k: 1380	n:110000
COL6A6   110000 perm   43 sec   (2587 perm/sec)   p_kst 1.254545e-02   p_cons 3.918636e-01   p_joint 2.325455e-02

Joint ci ratio: 7.033261e-02	ci left: 2.434511e-02	ci right 2.612793e-02	k: 3027	n:120000
Cons ci ratio: 1.424299e-02	ci left: 3.842012e-01	ci right 3.897209e-01	k: 46435	n:120000
KS ci ratio: 1.003421e-01	ci left: 1.192778e-02	ci right 1.319593e-02	k: 1506	n:120000
COL6A6   120000 perm   47 sec   (2560 perm/sec)   p_kst 1.255000e-02   p_cons 3.869583e-01   p_joint 2.522500e-02

Joint ci ratio: 6.830683e-02	ci left: 2.386306e-02	ci right 2.555824e-02	k: 3211	n:130000
Cons ci ratio: 1.367306e-02	ci left: 3.846967e-01	ci right 3.900006e-01	k: 50355	n:130000
KS ci ratio: 9.871487e-02	ci left: 1.139265e-02	ci right 1.258312e-02	k: 1557	n:130000
COL6A6   130000 perm   51 sec   (2536 perm/sec)   p_kst 1.197692e-02   p_cons 3.873462e-01   p_joint 2.470000e-02

Outputting figure to mutsig2_images.part000000000041/COL6A6.24_6936_130000_0.011977_0.38735_0.0247.png
                gene_name: COL6A6
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 16 percent done.
COL4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
Cons ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
KS ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
COL4A5   10000 perm   2 sec   (4088 perm/sec)   p_kst 5.371000e-01   p_cons 4.437000e-01   p_joint 6.808000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A5.23_5273_10000_0.5371_0.4437_0.6808.png
                gene_name: COL4A5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 17 percent done.
COL14A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.413562e-02	ci left: 7.162348e-01	ci right 7.338340e-01	k: 7251	n:10000
Cons ci ratio: 1.229451e-02	ci left: 9.047348e-01	ci right 9.160249e-01	k: 9105	n:10000
KS ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
COL14A1   10000 perm   2 sec   (4070 perm/sec)   p_kst 6.068000e-01   p_cons 9.105000e-01   p_joint 7.251000e-01

Outputting figure to mutsig2_images.part000000000041/COL14A1.21_5579_10000_0.6068_0.9105_0.7251.png
                gene_name: COL14A1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 19 percent done.
COL15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
Cons ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
KS ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
COL15A1   10000 perm   3 sec   (3956 perm/sec)   p_kst 1.164000e-01   p_cons 2.442000e-01   p_joint 2.235000e-01

Joint ci ratio: 5.209316e-02	ci left: 2.148693e-01	ci right 2.264121e-01	k: 4412	n:20000
Cons ci ratio: 4.829939e-02	ci left: 2.417294e-01	ci right 2.537440e-01	k: 4954	n:20000
KS ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
COL15A1   20000 perm   6 sec   (3624 perm/sec)   p_kst 1.157500e-01   p_cons 2.477000e-01   p_joint 2.206000e-01

Outputting figure to mutsig2_images.part000000000041/COL15A1.21_4335_20000_0.11575_0.2477_0.2206.png
                gene_name: COL15A1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
COL24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
Cons ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
KS ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
COL24A1   10000 perm   3 sec   (3766 perm/sec)   p_kst 3.653000e-01   p_cons 4.271000e-01   p_joint 5.136000e-01

Outputting figure to mutsig2_images.part000000000041/COL24A1.21_5385_10000_0.3653_0.4271_0.5136.png
                gene_name: COL24A1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 22 percent done.
COL1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303421e-02	ci left: 8.944660e-01	ci right 9.062996e-01	k: 9005	n:10000
Cons ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
KS ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
COL1A2   10000 perm   3 sec   (3338 perm/sec)   p_kst 6.429000e-01   p_cons 8.460000e-01   p_joint 9.005000e-01

Outputting figure to mutsig2_images.part000000000041/COL1A2.19_4309_10000_0.6429_0.846_0.9005.png
                gene_name: COL1A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 24 percent done.
COL9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 2.261365e-02	ci left: 7.416944e-01	ci right 7.587596e-01	k: 7503	n:10000
COL9A1   10000 perm   2 sec   (4454 perm/sec)   p_kst 7.503000e-01   p_cons 1.922000e-01   p_joint 4.358000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A1.18_2994_10000_0.7503_0.1922_0.4358.png
                gene_name: COL9A1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 26 percent done.
COL4A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
Cons ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
KS ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
COL4A6   10000 perm   3 sec   (3584 perm/sec)   p_kst 4.545000e-01   p_cons 3.836000e-01   p_joint 6.083000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A6.17_5271_10000_0.4545_0.3836_0.6083.png
                gene_name: COL4A6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 28 percent done.
COL5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
KS ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
COL5A1   10000 perm   3 sec   (3868 perm/sec)   p_kst 1.120000e-02   p_cons 5.598000e-01   p_joint 2.810000e-02

Joint ci ratio: 1.368624e-01	ci left: 3.669759e-02	ci right 4.213736e-02	k: 787	n:20000
Cons ci ratio: 2.474330e-02	ci left: 5.495821e-01	ci right 5.634015e-01	k: 11130	n:20000
KS ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
COL5A1   20000 perm   6 sec   (3548 perm/sec)   p_kst 1.200000e-02   p_cons 5.565000e-01   p_joint 3.935000e-02

Joint ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
Cons ci ratio: 2.022372e-02	ci left: 5.503558e-01	ci right 5.616333e-01	k: 16680	n:30000
KS ci ratio: 2.101336e-01	ci left: 1.026113e-02	ci right 1.270152e-02	k: 343	n:30000
COL5A1   30000 perm   9 sec   (3440 perm/sec)   p_kst 1.143333e-02   p_cons 5.560000e-01   p_joint 3.226667e-02

Joint ci ratio: 1.196082e-01	ci left: 2.458383e-02	ci right 2.773547e-02	k: 1045	n:40000
Cons ci ratio: 1.790809e-02	ci left: 5.401044e-01	ci right 5.498891e-01	k: 21800	n:40000
KS ci ratio: 1.841603e-01	ci left: 1.016795e-02	ci right 1.225392e-02	k: 447	n:40000
COL5A1   40000 perm   12 sec   (3365 perm/sec)   p_kst 1.117500e-02   p_cons 5.450000e-01   p_joint 2.612500e-02

Joint ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
Cons ci ratio: 1.625152e-02	ci left: 5.334178e-01	ci right 5.421778e-01	k: 26890	n:50000
KS ci ratio: 1.647184e-01	ci left: 1.027686e-02	ci right 1.214054e-02	k: 559	n:50000
COL5A1   50000 perm   15 sec   (3290 perm/sec)   p_kst 1.118000e-02   p_cons 5.378000e-01   p_joint 2.838000e-02

Joint ci ratio: 9.045555e-02	ci left: 2.897547e-02	ci right 3.173687e-02	k: 1820	n:60000
Cons ci ratio: 1.484506e-02	ci left: 5.334838e-01	ci right 5.414793e-01	k: 32249	n:60000
KS ci ratio: 1.463451e-01	ci left: 1.095130e-02	ci right 1.269640e-02	k: 708	n:60000
COL5A1   60000 perm   19 sec   (3205 perm/sec)   p_kst 1.180000e-02   p_cons 5.374833e-01   p_joint 3.033333e-02

Joint ci ratio: 8.824896e-02	ci left: 2.620316e-02	ci right 2.863623e-02	k: 1918	n:70000
Cons ci ratio: 1.372646e-02	ci left: 5.344124e-01	ci right 5.418130e-01	k: 37668	n:70000
KS ci ratio: 1.348447e-01	ci left: 1.112366e-02	ci right 1.274575e-02	k: 834	n:70000
COL5A1   70000 perm   22 sec   (3168 perm/sec)   p_kst 1.191429e-02   p_cons 5.381143e-01   p_joint 2.740000e-02

Joint ci ratio: 8.345650e-02	ci left: 2.571632e-02	ci right 2.796817e-02	k: 2146	n:80000
Cons ci ratio: 1.283484e-02	ci left: 5.348503e-01	ci right 5.417719e-01	k: 43065	n:80000
KS ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
COL5A1   80000 perm   26 sec   (3124 perm/sec)   p_kst 1.206250e-02   p_cons 5.383125e-01   p_joint 2.682500e-02

Joint ci ratio: 7.692408e-02	ci left: 2.696459e-02	ci right 2.913264e-02	k: 2523	n:90000
Cons ci ratio: 1.211088e-02	ci left: 5.346361e-01	ci right 5.411615e-01	k: 48411	n:90000
KS ci ratio: 1.176298e-01	ci left: 1.147142e-02	ci right 1.291583e-02	k: 1096	n:90000
COL5A1   90000 perm   29 sec   (3084 perm/sec)   p_kst 1.217778e-02   p_cons 5.379000e-01   p_joint 2.803333e-02

Joint ci ratio: 7.820306e-02	ci left: 2.355064e-02	ci right 2.547708e-02	k: 2450	n:100000
Cons ci ratio: 1.109640e-02	ci left: 5.520634e-01	ci right 5.582334e-01	k: 55515	n:100000
KS ci ratio: 1.119141e-01	ci left: 1.144127e-02	ci right 1.280725e-02	k: 1211	n:100000
COL5A1   100000 perm   33 sec   (3046 perm/sec)   p_kst 1.211000e-02   p_cons 5.551500e-01   p_joint 2.450000e-02

Joint ci ratio: 7.340123e-02	ci left: 2.434427e-02	ci right 2.620814e-02	k: 2779	n:110000
Cons ci ratio: 1.057077e-02	ci left: 5.526394e-01	ci right 5.585213e-01	k: 61114	n:110000
KS ci ratio: 1.065927e-01	ci left: 1.149765e-02	ci right 1.280099e-02	k: 1335	n:110000
COL5A1   110000 perm   37 sec   (3010 perm/sec)   p_kst 1.213636e-02   p_cons 5.555818e-01   p_joint 2.526364e-02

Joint ci ratio: 6.485817e-02	ci left: 2.858268e-02	ci right 3.050681e-02	k: 3544	n:120000
Cons ci ratio: 1.011406e-02	ci left: 5.530916e-01	ci right 5.587223e-01	k: 66709	n:120000
KS ci ratio: 1.021774e-01	ci left: 1.149717e-02	ci right 1.274324e-02	k: 1453	n:120000
COL5A1   120000 perm   40 sec   (2970 perm/sec)   p_kst 1.210833e-02   p_cons 5.559083e-01   p_joint 2.953333e-02

Joint ci ratio: 6.430282e-02	ci left: 2.689789e-02	ci right 2.869249e-02	k: 3612	n:130000
Cons ci ratio: 9.717901e-03	ci left: 5.531709e-01	ci right 5.585805e-01	k: 72264	n:130000
KS ci ratio: 9.770429e-02	ci left: 1.163282e-02	ci right 1.283523e-02	k: 1589	n:130000
COL5A1   130000 perm   44 sec   (2940 perm/sec)   p_kst 1.222308e-02   p_cons 5.558769e-01   p_joint 2.778462e-02

Outputting figure to mutsig2_images.part000000000041/COL5A1.17_5781_130000_0.012223_0.55588_0.027785.png
                gene_name: COL5A1
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 29 percent done.
COL4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
COL4A1   10000 perm   3 sec   (3879 perm/sec)   p_kst 6.850000e-02   p_cons 2.450000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
Cons ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
KS ci ratio: 9.992253e-02	ci left: 6.786890e-02	ci right 7.505629e-02	k: 1428	n:20000
COL4A1   20000 perm   6 sec   (3564 perm/sec)   p_kst 7.140000e-02   p_cons 2.550000e-02   p_joint 1.965000e-02

Joint ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
Cons ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
KS ci ratio: 8.272519e-02	ci left: 6.674555e-02	ci right 7.253813e-02	k: 2088	n:30000
COL4A1   30000 perm   9 sec   (3451 perm/sec)   p_kst 6.960000e-02   p_cons 2.486667e-02   p_joint 2.476667e-02

Joint ci ratio: 1.600497e-01	ci left: 1.359145e-02	ci right 1.597975e-02	k: 590	n:40000
Cons ci ratio: 1.242610e-01	ci left: 2.276466e-02	ci right 2.580494e-02	k: 970	n:40000
KS ci ratio: 7.173006e-02	ci left: 6.697753e-02	ci right 7.198519e-02	k: 2778	n:40000
COL4A1   40000 perm   12 sec   (3369 perm/sec)   p_kst 6.945000e-02   p_cons 2.425000e-02   p_joint 1.475000e-02

Joint ci ratio: 1.701806e-01	ci left: 9.605911e-03	ci right 1.141160e-02	k: 524	n:50000
Cons ci ratio: 1.113191e-01	ci left: 2.285127e-02	ci right 2.556435e-02	k: 1209	n:50000
KS ci ratio: 6.541853e-02	ci left: 6.480399e-02	ci right 6.920644e-02	k: 3349	n:50000
COL4A1   50000 perm   15 sec   (3304 perm/sec)   p_kst 6.698000e-02   p_cons 2.418000e-02   p_joint 1.048000e-02

Joint ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
Cons ci ratio: 1.012633e-01	ci left: 2.313141e-02	ci right 2.561488e-02	k: 1461	n:60000
KS ci ratio: 5.990263e-02	ci left: 6.461766e-02	ci right 6.862438e-02	k: 3996	n:60000
COL4A1   60000 perm   19 sec   (3205 perm/sec)   p_kst 6.660000e-02   p_cons 2.435000e-02   p_joint 9.983333e-03

Joint ci ratio: 1.581528e-01	ci left: 8.011601e-03	ci right 9.401013e-03	k: 608	n:70000
Cons ci ratio: 9.388347e-02	ci left: 2.315798e-02	ci right 2.545311e-02	k: 1700	n:70000
KS ci ratio: 5.580717e-02	ci left: 6.400241e-02	ci right 6.769082e-02	k: 4608	n:70000
COL4A1   70000 perm   22 sec   (3147 perm/sec)   p_kst 6.582857e-02   p_cons 2.428571e-02   p_joint 8.685714e-03

Joint ci ratio: 1.228108e-01	ci left: 1.180218e-02	ci right 1.335847e-02	k: 1005	n:80000
Cons ci ratio: 8.816927e-02	ci left: 2.304833e-02	ci right 2.518638e-02	k: 1928	n:80000
KS ci ratio: 5.223700e-02	ci left: 6.404208e-02	ci right 6.748950e-02	k: 5260	n:80000
COL4A1   80000 perm   26 sec   (3090 perm/sec)   p_kst 6.575000e-02   p_cons 2.410000e-02   p_joint 1.256250e-02

Joint ci ratio: 1.128808e-01	ci left: 1.247533e-02	ci right 1.397851e-02	k: 1189	n:90000
Cons ci ratio: 8.360426e-02	ci left: 2.284664e-02	ci right 2.485088e-02	k: 2145	n:90000
KS ci ratio: 4.987770e-02	ci left: 6.261814e-02	ci right 6.583224e-02	k: 5779	n:90000
COL4A1   90000 perm   30 sec   (3038 perm/sec)   p_kst 6.421111e-02   p_cons 2.383333e-02   p_joint 1.321111e-02

Joint ci ratio: 1.168970e-01	ci left: 1.046956e-02	ci right 1.177903e-02	k: 1111	n:100000
Cons ci ratio: 7.952686e-02	ci left: 2.277585e-02	ci right 2.467191e-02	k: 2371	n:100000
KS ci ratio: 4.746136e-02	ci left: 6.234236e-02	ci right 6.538300e-02	k: 6385	n:100000
COL4A1   100000 perm   33 sec   (2997 perm/sec)   p_kst 6.385000e-02   p_cons 2.371000e-02   p_joint 1.111000e-02

Joint ci ratio: 1.029487e-01	ci left: 1.233892e-02	ci right 1.368693e-02	k: 1430	n:110000
Cons ci ratio: 7.575458e-02	ci left: 2.286265e-02	ci right 2.467167e-02	k: 2613	n:110000
KS ci ratio: 4.514154e-02	ci left: 6.270451e-02	ci right 6.560943e-02	k: 7056	n:110000
COL4A1   110000 perm   37 sec   (2954 perm/sec)   p_kst 6.414545e-02   p_cons 2.375455e-02   p_joint 1.300000e-02

Joint ci ratio: 9.756060e-02	ci left: 1.262693e-02	ci right 1.393008e-02	k: 1592	n:120000
Cons ci ratio: 6.723054e-02	ci left: 2.662298e-02	ci right 2.848328e-02	k: 3305	n:120000
KS ci ratio: 4.326043e-02	ci left: 6.265458e-02	ci right 6.543320e-02	k: 7684	n:120000
COL4A1   120000 perm   41 sec   (2911 perm/sec)   p_kst 6.403333e-02   p_cons 2.754167e-02   p_joint 1.326667e-02

Outputting figure to mutsig2_images.part000000000041/COL4A1.16_5218_120000_0.064033_0.027542_0.013267.png
                gene_name: COL4A1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 31 percent done.
COL4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
COL4A2   10000 perm   3 sec   (3872 perm/sec)   p_kst 1.790000e-02   p_cons 6.250000e-01   p_joint 7.400000e-02

Joint ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
Cons ci ratio: 2.146053e-02	ci left: 6.184484e-01	ci right 6.319152e-01	k: 12504	n:20000
KS ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
COL4A2   20000 perm   6 sec   (3472 perm/sec)   p_kst 1.820000e-02   p_cons 6.252000e-01   p_joint 4.985000e-02

Joint ci ratio: 1.070282e-01	ci left: 4.050483e-02	ci right 4.511757e-02	k: 1283	n:30000
Cons ci ratio: 1.735985e-02	ci left: 6.240730e-01	ci right 6.350352e-01	k: 18887	n:30000
KS ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
COL4A2   30000 perm   9 sec   (3385 perm/sec)   p_kst 1.843333e-02   p_cons 6.295667e-01   p_joint 4.276667e-02

Joint ci ratio: 1.024237e-01	ci left: 3.351287e-02	ci right 3.715499e-02	k: 1412	n:40000
Cons ci ratio: 1.517120e-02	ci left: 6.205600e-01	ci right 6.300718e-01	k: 25013	n:40000
KS ci ratio: 1.433544e-01	ci left: 1.703317e-02	ci right 1.968741e-02	k: 733	n:40000
COL4A2   40000 perm   12 sec   (3324 perm/sec)   p_kst 1.832500e-02   p_cons 6.253250e-01   p_joint 3.530000e-02

Joint ci ratio: 8.734828e-02	ci left: 3.702620e-02	ci right 4.042762e-02	k: 1935	n:50000
Cons ci ratio: 1.355180e-02	ci left: 6.216815e-01	ci right 6.301839e-01	k: 31297	n:50000
KS ci ratio: 1.236000e-01	ci left: 1.849986e-02	ci right 2.095634e-02	k: 985	n:50000
COL4A2   50000 perm   15 sec   (3269 perm/sec)   p_kst 1.970000e-02   p_cons 6.259400e-01   p_joint 3.870000e-02

Joint ci ratio: 8.311203e-02	ci left: 3.426221e-02	ci right 3.724958e-02	k: 2144	n:60000
Cons ci ratio: 1.192559e-02	ci left: 6.391011e-01	ci right 6.467851e-01	k: 38577	n:60000
KS ci ratio: 1.125017e-01	ci left: 1.871643e-02	ci right 2.096368e-02	k: 1189	n:60000
COL4A2   60000 perm   19 sec   (3216 perm/sec)   p_kst 1.981667e-02   p_cons 6.429500e-01   p_joint 3.573333e-02

Joint ci ratio: 7.091193e-02	ci left: 4.034335e-02	ci right 4.332335e-02	k: 2927	n:70000
Cons ci ratio: 1.103085e-02	ci left: 6.398100e-01	ci right 6.469210e-01	k: 45036	n:70000
KS ci ratio: 1.042459e-01	ci left: 1.876686e-02	ci right 2.084465e-02	k: 1385	n:70000
COL4A2   70000 perm   22 sec   (3171 perm/sec)   p_kst 1.978571e-02   p_cons 6.433714e-01   p_joint 4.181429e-02

Joint ci ratio: 6.239870e-02	ci left: 4.554364e-02	ci right 4.848932e-02	k: 3760	n:80000
Cons ci ratio: 1.030851e-02	ci left: 6.404827e-01	ci right 6.471318e-01	k: 51505	n:80000
KS ci ratio: 9.811519e-02	ci left: 1.860183e-02	ci right 2.053324e-02	k: 1564	n:80000
COL4A2   80000 perm   26 sec   (3128 perm/sec)   p_kst 1.955000e-02   p_cons 6.438125e-01   p_joint 4.700000e-02

Outputting figure to mutsig2_images.part000000000041/COL4A2.16_5327_80000_0.01955_0.64381_0.047.png
                gene_name: COL4A2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.048 

Current progress: 33 percent done.
COL25A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
COL25A1   10000 perm   2 sec   (4353 perm/sec)   p_kst 2.046000e-01   p_cons 6.610000e-02   p_joint 1.175000e-01

Joint ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
Cons ci ratio: 1.062673e-01	ci left: 6.030523e-02	ci right 6.712229e-02	k: 1273	n:20000
KS ci ratio: 5.474448e-02	ci left: 1.984336e-01	ci right 2.096526e-01	k: 4080	n:20000
COL25A1   20000 perm   5 sec   (3733 perm/sec)   p_kst 2.040000e-01   p_cons 6.365000e-02   p_joint 8.365000e-02

Joint ci ratio: 7.164433e-02	ci left: 8.747337e-02	ci right 9.400614e-02	k: 2721	n:30000
Cons ci ratio: 8.645384e-02	ci left: 6.135404e-02	ci right 6.693073e-02	k: 1923	n:30000
KS ci ratio: 4.493646e-02	ci left: 1.977666e-01	ci right 2.068911e-01	k: 6069	n:30000
COL25A1   30000 perm   8 sec   (3589 perm/sec)   p_kst 2.023000e-01   p_cons 6.410000e-02   p_joint 9.070000e-02

Outputting figure to mutsig2_images.part000000000041/COL25A1.14_2193_30000_0.2023_0.0641_0.0907.png
                gene_name: COL25A1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 34 percent done.
COL27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
Cons ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
KS ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
COL27A1   10000 perm   2 sec   (4136 perm/sec)   p_kst 1.264000e-01   p_cons 6.669000e-01   p_joint 2.854000e-01

Joint ci ratio: 5.136934e-02	ci left: 2.196738e-01	ci right 2.313061e-01	k: 4509	n:20000
Cons ci ratio: 1.951628e-02	ci left: 6.619769e-01	ci right 6.750740e-01	k: 13371	n:20000
KS ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
COL27A1   20000 perm   5 sec   (3756 perm/sec)   p_kst 1.219000e-01   p_cons 6.685500e-01   p_joint 2.254500e-01

Outputting figure to mutsig2_images.part000000000041/COL27A1.13_5826_20000_0.1219_0.66855_0.22545.png
                gene_name: COL27A1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 36 percent done.
COL4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
Cons ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
KS ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
COL4A4   10000 perm   2 sec   (4192 perm/sec)   p_kst 8.746000e-01   p_cons 5.359000e-01   p_joint 8.926000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A4.13_5261_10000_0.8746_0.5359_0.8926.png
                gene_name: COL4A4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 38 percent done.
COL5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
Cons ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
KS ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
COL5A3   10000 perm   3 sec   (3985 perm/sec)   p_kst 3.256000e-01   p_cons 7.743000e-01   p_joint 6.695000e-01

Outputting figure to mutsig2_images.part000000000041/COL5A3.12_5506_10000_0.3256_0.7743_0.6695.png
                gene_name: COL5A3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 40 percent done.
COL21A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
KS ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
COL21A1   10000 perm   2 sec   (4593 perm/sec)   p_kst 5.852000e-01   p_cons 9.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL21A1.10_2990_10000_0.5852_0.962_1.png
                gene_name: COL21A1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
COL28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
COL28A1   10000 perm   2 sec   (4644 perm/sec)   p_kst 4.320000e-02   p_cons 3.087000e-01   p_joint 7.130000e-02

Joint ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
Cons ci ratio: 4.263996e-02	ci left: 2.906722e-01	ci right 3.033869e-01	k: 5940	n:20000
KS ci ratio: 1.305247e-01	ci left: 4.032708e-02	ci right 4.600670e-02	k: 862	n:20000
COL28A1   20000 perm   5 sec   (4251 perm/sec)   p_kst 4.310000e-02   p_cons 2.970000e-01   p_joint 5.215000e-02

Joint ci ratio: 7.781039e-02	ci left: 7.495697e-02	ci right 8.105838e-02	k: 2339	n:30000
Cons ci ratio: 3.328450e-02	ci left: 3.108732e-01	ci right 3.214291e-01	k: 9484	n:30000
KS ci ratio: 1.077314e-01	ci left: 3.998524e-02	ci right 4.457061e-02	k: 1267	n:30000
COL28A1   30000 perm   7 sec   (4077 perm/sec)   p_kst 4.223333e-02   p_cons 3.161333e-01   p_joint 7.796667e-02

Joint ci ratio: 7.198090e-02	ci left: 6.653505e-02	ci right 7.152774e-02	k: 2760	n:40000
Cons ci ratio: 3.064752e-02	ci left: 2.858049e-01	ci right 2.947255e-01	k: 11610	n:40000
KS ci ratio: 9.297355e-02	ci left: 4.056833e-02	ci right 4.454842e-02	k: 1701	n:40000
COL28A1   40000 perm   10 sec   (3960 perm/sec)   p_kst 4.252500e-02   p_cons 2.902500e-01   p_joint 6.900000e-02

Outputting figure to mutsig2_images.part000000000041/COL28A1.10_3514_40000_0.042525_0.29025_0.069.png
                gene_name: COL28A1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 43 percent done.
COPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
Cons ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
KS ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
COPA   10000 perm   2 sec   (4568 perm/sec)   p_kst 2.220000e-02   p_cons 3.643000e-01   p_joint 3.410000e-02

Joint ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
Cons ci ratio: 3.652906e-02	ci left: 3.586715e-01	ci right 3.720677e-01	k: 7307	n:20000
KS ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
COPA   20000 perm   5 sec   (4176 perm/sec)   p_kst 2.290000e-02   p_cons 3.653500e-01   p_joint 4.590000e-02

Joint ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
Cons ci ratio: 2.971466e-02	ci left: 3.616420e-01	ci right 3.725837e-01	k: 11013	n:30000
KS ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
COPA   30000 perm   7 sec   (4023 perm/sec)   p_kst 2.120000e-02   p_cons 3.671000e-01   p_joint 4.726667e-02

Joint ci ratio: 8.534367e-02	ci left: 4.795789e-02	ci right 5.225773e-02	k: 2003	n:40000
Cons ci ratio: 2.534950e-02	ci left: 3.693797e-01	ci right 3.788886e-01	k: 14965	n:40000
KS ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
COPA   40000 perm   10 sec   (3906 perm/sec)   p_kst 2.145000e-02   p_cons 3.741250e-01   p_joint 5.007500e-02

Joint ci ratio: 7.537264e-02	ci left: 4.938241e-02	ci right 5.326989e-02	k: 2565	n:50000
Cons ci ratio: 2.261480e-02	ci left: 3.710931e-01	ci right 3.796014e-01	k: 18767	n:50000
KS ci ratio: 1.190602e-01	ci left: 1.995522e-02	ci right 2.250079e-02	k: 1060	n:50000
COPA   50000 perm   13 sec   (3820 perm/sec)   p_kst 2.120000e-02   p_cons 3.753400e-01   p_joint 5.130000e-02

Joint ci ratio: 6.500106e-02	ci left: 5.528932e-02	ci right 5.902032e-02	k: 3428	n:60000
Cons ci ratio: 2.061991e-02	ci left: 3.720222e-01	ci right 3.797898e-01	k: 22554	n:60000
KS ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
COPA   60000 perm   16 sec   (3751 perm/sec)   p_kst 2.263333e-02   p_cons 3.759000e-01   p_joint 5.713333e-02

Joint ci ratio: 6.749490e-02	ci left: 4.441768e-02	ci right 4.753438e-02	k: 3217	n:70000
Cons ci ratio: 1.909042e-02	ci left: 3.723100e-01	ci right 3.795003e-01	k: 26313	n:70000
KS ci ratio: 9.787926e-02	ci left: 2.130251e-02	ci right 2.350876e-02	k: 1567	n:70000
COPA   70000 perm   19 sec   (3686 perm/sec)   p_kst 2.238571e-02   p_cons 3.759000e-01   p_joint 4.595714e-02

Outputting figure to mutsig2_images.part000000000041/COPA.10_3834_70000_0.022386_0.3759_0.045957.png
                gene_name: COPA
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 45 percent done.
COL17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
Cons ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
KS ci ratio: 3.003833e-02	ci left: 6.204504e-01	ci right 6.394738e-01	k: 6300	n:10000
COL17A1   10000 perm   2 sec   (4144 perm/sec)   p_kst 6.300000e-01   p_cons 1.688000e-01   p_joint 5.157000e-01

Outputting figure to mutsig2_images.part000000000041/COL17A1.9_4714_10000_0.63_0.1688_0.5157.png
                gene_name: COL17A1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 47 percent done.
COL11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
Cons ci ratio: 1.724346e-02	ci left: 8.305285e-01	ci right 8.450741e-01	k: 8379	n:10000
KS ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
COL11A2   10000 perm   3 sec   (3754 perm/sec)   p_kst 1.434000e-01   p_cons 8.379000e-01   p_joint 3.390000e-01

Outputting figure to mutsig2_images.part000000000041/COL11A2.7_5550_10000_0.1434_0.8379_0.339.png
                gene_name: COL11A2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 48 percent done.
COL2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
Cons ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
KS ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
COL2A1   10000 perm   2 sec   (4216 perm/sec)   p_kst 3.902000e-01   p_cons 4.820000e-02   p_joint 1.380000e-01

Joint ci ratio: 5.975904e-02	ci left: 1.717327e-01	ci right 1.823614e-01	k: 3540	n:20000
Cons ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
KS ci ratio: 3.345148e-02	ci left: 4.002302e-01	ci right 4.138968e-01	k: 8141	n:20000
COL2A1   20000 perm   5 sec   (3886 perm/sec)   p_kst 4.070500e-01   p_cons 4.835000e-02   p_joint 1.770000e-01

Joint ci ratio: 5.698716e-02	ci left: 1.323373e-01	ci right 1.401332e-01	k: 4086	n:30000
Cons ci ratio: 1.012709e-01	ci left: 4.515283e-02	ci right 5.000194e-02	k: 1426	n:30000
KS ci ratio: 2.715140e-02	ci left: 4.043602e-01	ci right 4.155239e-01	k: 12298	n:30000
COL2A1   30000 perm   8 sec   (3758 perm/sec)   p_kst 4.099333e-01   p_cons 4.753333e-02   p_joint 1.362000e-01

Joint ci ratio: 5.293256e-02	ci left: 1.173743e-01	ci right 1.237809e-01	k: 4822	n:40000
Cons ci ratio: 8.738255e-02	ci left: 4.580311e-02	ci right 5.001284e-02	k: 1915	n:40000
KS ci ratio: 2.413940e-02	ci left: 3.924997e-01	ci right 4.021152e-01	k: 15892	n:40000
COL2A1   40000 perm   11 sec   (3665 perm/sec)   p_kst 3.973000e-01   p_cons 4.787500e-02   p_joint 1.205500e-01

Outputting figure to mutsig2_images.part000000000041/COL2A1.7_4680_40000_0.3973_0.047875_0.12055.png
                gene_name: COL2A1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 50 percent done.
COPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
Cons ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
KS ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
COPB1   10000 perm   2 sec   (4416 perm/sec)   p_kst 2.458000e-01   p_cons 2.524000e-01   p_joint 2.163000e-01

Outputting figure to mutsig2_images.part000000000041/COPB1.7_2946_10000_0.2458_0.2524_0.2163.png
                gene_name: COPB1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 52 percent done.
COL20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
Cons ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
KS ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
COL20A1   10000 perm   2 sec   (4971 perm/sec)   p_kst 9.021000e-01   p_cons 1.121000e-01   p_joint 4.191000e-01

Joint ci ratio: 3.356956e-02	ci left: 3.985349e-01	ci right 4.121926e-01	k: 8107	n:20000
Cons ci ratio: 7.721562e-02	ci left: 1.097251e-01	ci right 1.185874e-01	k: 2282	n:20000
KS ci ratio: 8.299738e-03	ci left: 9.138563e-01	ci right 9.215218e-01	k: 18355	n:20000
COL20A1   20000 perm   5 sec   (4409 perm/sec)   p_kst 9.177500e-01   p_cons 1.141000e-01   p_joint 4.053500e-01

Outputting figure to mutsig2_images.part000000000041/COL20A1.6_3933_20000_0.91775_0.1141_0.40535.png
                gene_name: COL20A1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 53 percent done.
COL9A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
COL9A3   10000 perm   2 sec   (4752 perm/sec)   p_kst 5.800000e-02   p_cons 1.550000e-02   p_joint 1.530000e-02

Joint ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
Cons ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
KS ci ratio: 1.118075e-01	ci left: 5.465393e-02	ci right 6.117534e-02	k: 1157	n:20000
COL9A3   20000 perm   4 sec   (4495 perm/sec)   p_kst 5.785000e-02   p_cons 1.640000e-02   p_joint 1.855000e-02

Joint ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
Cons ci ratio: 1.743706e-01	ci left: 1.512069e-02	ci right 1.804068e-02	k: 496	n:30000
KS ci ratio: 9.117969e-02	ci left: 5.538123e-02	ci right 6.070477e-02	k: 1740	n:30000
COL9A3   30000 perm   7 sec   (4371 perm/sec)   p_kst 5.800000e-02   p_cons 1.653333e-02   p_joint 2.656667e-02

Joint ci ratio: 9.608147e-02	ci left: 3.802732e-02	ci right 4.188983e-02	k: 1597	n:40000
Cons ci ratio: 1.508558e-01	ci left: 1.534652e-02	ci right 1.787436e-02	k: 663	n:40000
KS ci ratio: 7.884409e-02	ci left: 5.590075e-02	ci right 6.051364e-02	k: 2327	n:40000
COL9A3   40000 perm   9 sec   (4265 perm/sec)   p_kst 5.817500e-02   p_cons 1.657500e-02   p_joint 3.992500e-02

Joint ci ratio: 1.480884e-01	ci left: 1.279575e-02	ci right 1.486126e-02	k: 690	n:50000
Cons ci ratio: 1.337870e-01	ci left: 1.574962e-02	ci right 1.802697e-02	k: 843	n:50000
KS ci ratio: 7.218129e-02	ci left: 5.368595e-02	ci right 5.772583e-02	k: 2784	n:50000
COL9A3   50000 perm   12 sec   (4144 perm/sec)   p_kst 5.568000e-02   p_cons 1.686000e-02   p_joint 1.380000e-02

Joint ci ratio: 1.116905e-01	ci left: 1.899197e-02	ci right 2.125478e-02	k: 1206	n:60000
Cons ci ratio: 1.242564e-01	ci left: 1.530191e-02	ci right 1.734526e-02	k: 978	n:60000
KS ci ratio: 6.579853e-02	ci left: 5.400937e-02	ci right 5.770040e-02	k: 3350	n:60000
COL9A3   60000 perm   15 sec   (4063 perm/sec)   p_kst 5.583333e-02   p_cons 1.630000e-02   p_joint 2.010000e-02

Joint ci ratio: 1.313090e-01	ci left: 1.174535e-02	ci right 1.340970e-02	k: 879	n:70000
Cons ci ratio: 1.179144e-01	ci left: 1.462561e-02	ci right 1.647200e-02	k: 1087	n:70000
KS ci ratio: 6.107085e-02	ci left: 5.388563e-02	ci right 5.729419e-02	k: 3890	n:70000
COL9A3   70000 perm   18 sec   (3993 perm/sec)   p_kst 5.557143e-02   p_cons 1.552857e-02   p_joint 1.255714e-02

Joint ci ratio: 1.389539e-01	ci left: 9.165161e-03	ci right 1.054573e-02	k: 787	n:80000
Cons ci ratio: 1.110925e-01	ci left: 1.447297e-02	ci right 1.618744e-02	k: 1225	n:80000
KS ci ratio: 5.693608e-02	ci left: 5.434263e-02	ci right 5.753967e-02	k: 4474	n:80000
COL9A3   80000 perm   20 sec   (3928 perm/sec)   p_kst 5.592500e-02   p_cons 1.531250e-02   p_joint 9.837500e-03

Joint ci ratio: 1.136576e-01	ci left: 1.230253e-02	ci right 1.379577e-02	k: 1173	n:90000
Cons ci ratio: 1.123557e-01	ci left: 1.259415e-02	ci right 1.410412e-02	k: 1200	n:90000
KS ci ratio: 5.374422e-02	ci left: 5.430918e-02	ci right 5.731953e-02	k: 5022	n:90000
COL9A3   90000 perm   23 sec   (3854 perm/sec)   p_kst 5.580000e-02   p_cons 1.333333e-02   p_joint 1.303333e-02

Joint ci ratio: 1.012424e-01	ci left: 1.402168e-02	ci right 1.552665e-02	k: 1476	n:100000
Cons ci ratio: 1.066080e-01	ci left: 1.262834e-02	ci right 1.406009e-02	k: 1333	n:100000
KS ci ratio: 5.104496e-02	ci left: 5.426670e-02	ci right 5.711914e-02	k: 5568	n:100000
COL9A3   100000 perm   27 sec   (3763 perm/sec)   p_kst 5.568000e-02   p_cons 1.333000e-02   p_joint 1.476000e-02

Joint ci ratio: 1.000488e-01	ci left: 1.307456e-02	ci right 1.446034e-02	k: 1513	n:110000
Cons ci ratio: 1.015907e-01	ci left: 1.267565e-02	ci right 1.404109e-02	k: 1468	n:110000
KS ci ratio: 4.838532e-02	ci left: 5.494502e-02	ci right 5.767843e-02	k: 6193	n:110000
COL9A3   110000 perm   30 sec   (3670 perm/sec)   p_kst 5.630000e-02   p_cons 1.334545e-02   p_joint 1.375455e-02

Joint ci ratio: 1.014037e-01	ci left: 1.167589e-02	ci right 1.293117e-02	k: 1475	n:120000
Cons ci ratio: 9.706776e-02	ci left: 1.275706e-02	ci right 1.406661e-02	k: 1608	n:120000
KS ci ratio: 4.639857e-02	ci left: 5.483757e-02	ci right 5.745060e-02	k: 6736	n:120000
COL9A3   120000 perm   33 sec   (3621 perm/sec)   p_kst 5.613333e-02   p_cons 1.340000e-02   p_joint 1.229167e-02

Joint ci ratio: 9.836401e-02	ci left: 1.147520e-02	ci right 1.266979e-02	k: 1568	n:130000
Cons ci ratio: 9.350697e-02	ci left: 1.271436e-02	ci right 1.396902e-02	k: 1733	n:130000
KS ci ratio: 4.457967e-02	ci left: 5.488562e-02	ci right 5.739577e-02	k: 7297	n:130000
COL9A3   130000 perm   36 sec   (3565 perm/sec)   p_kst 5.613077e-02   p_cons 1.333077e-02   p_joint 1.206154e-02

Outputting figure to mutsig2_images.part000000000041/COL9A3.6_2183_130000_0.056131_0.013331_0.012062.png
                gene_name: COL9A3
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.013 

Current progress: 55 percent done.
COL16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 1.240721e-02	ci left: 9.031932e-01	ci right 9.145673e-01	k: 9090	n:10000
KS ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
COL16A1   10000 perm   2 sec   (4413 perm/sec)   p_kst 1.270000e-02   p_cons 9.090000e-01   p_joint 4.350000e-02

Joint ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
Cons ci ratio: 9.452411e-03	ci left: 8.915340e-01	ci right 9.000506e-01	k: 17917	n:20000
KS ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
COL16A1   20000 perm   5 sec   (3944 perm/sec)   p_kst 1.355000e-02   p_cons 8.958500e-01   p_joint 6.025000e-02

Joint ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
Cons ci ratio: 7.661574e-03	ci left: 8.937082e-01	ci right 9.006147e-01	k: 26916	n:30000
KS ci ratio: 1.925026e-01	ci left: 1.231996e-02	ci right 1.497546e-02	k: 408	n:30000
COL16A1   30000 perm   8 sec   (3763 perm/sec)   p_kst 1.360000e-02   p_cons 8.972000e-01   p_joint 3.963333e-02

Joint ci ratio: 9.875102e-02	ci left: 3.602539e-02	ci right 3.979208e-02	k: 1515	n:40000
Cons ci ratio: 6.228207e-03	ci left: 9.054295e-01	ci right 9.111110e-01	k: 36332	n:40000
KS ci ratio: 1.724683e-01	ci left: 1.164957e-02	ci right 1.387200e-02	k: 509	n:40000
COL16A1   40000 perm   11 sec   (3681 perm/sec)   p_kst 1.272500e-02   p_cons 9.083000e-01   p_joint 3.787500e-02

Joint ci ratio: 9.592399e-02	ci left: 3.076755e-02	ci right 3.388706e-02	k: 1615	n:50000
Cons ci ratio: 5.630560e-03	ci left: 9.039145e-01	ci right 9.090382e-01	k: 45325	n:50000
KS ci ratio: 1.515739e-01	ci left: 1.219871e-02	ci right 1.421839e-02	k: 659	n:50000
COL16A1   50000 perm   14 sec   (3614 perm/sec)   p_kst 1.318000e-02   p_cons 9.065000e-01   p_joint 3.230000e-02

Joint ci ratio: 7.806121e-02	ci left: 3.875670e-02	ci right 4.192130e-02	k: 2419	n:60000
Cons ci ratio: 5.287663e-03	ci left: 8.991721e-01	ci right 9.039557e-01	k: 54095	n:60000
KS ci ratio: 1.375776e-01	ci left: 1.243084e-02	ci right 1.428334e-02	k: 800	n:60000
COL16A1   60000 perm   17 sec   (3557 perm/sec)   p_kst 1.333333e-02   p_cons 9.015833e-01   p_joint 4.031667e-02

Joint ci ratio: 7.995276e-02	ci left: 3.187103e-02	ci right 3.453928e-02	k: 2323	n:70000
Cons ci ratio: 4.611608e-03	ci left: 9.095594e-01	ci right 9.137778e-01	k: 63818	n:70000
KS ci ratio: 1.275453e-01	ci left: 1.246445e-02	ci right 1.417625e-02	k: 931	n:70000
COL16A1   70000 perm   20 sec   (3505 perm/sec)   p_kst 1.330000e-02   p_cons 9.116857e-01   p_joint 3.318571e-02

Joint ci ratio: 6.809575e-02	ci left: 3.841893e-02	ci right 4.113958e-02	k: 3181	n:80000
Cons ci ratio: 4.444672e-03	ci left: 9.047140e-01	ci right 9.087565e-01	k: 72540	n:80000
KS ci ratio: 1.190331e-01	ci left: 1.257828e-02	ci right 1.418230e-02	k: 1069	n:80000
COL16A1   80000 perm   23 sec   (3463 perm/sec)   p_kst 1.336250e-02   p_cons 9.067500e-01   p_joint 3.976250e-02

Joint ci ratio: 7.101733e-02	ci left: 3.158035e-02	ci right 3.391656e-02	k: 2946	n:90000
Cons ci ratio: 4.179850e-03	ci left: 9.052632e-01	ci right 9.090660e-01	k: 81646	n:90000
KS ci ratio: 1.122610e-01	ci left: 1.261576e-02	ci right 1.412696e-02	k: 1202	n:90000
COL16A1   90000 perm   26 sec   (3413 perm/sec)   p_kst 1.335556e-02   p_cons 9.071778e-01   p_joint 3.273333e-02

Joint ci ratio: 6.729277e-02	ci left: 3.171447e-02	ci right 3.393274e-02	k: 3281	n:100000
Cons ci ratio: 3.957513e-03	ci left: 9.056975e-01	ci right 9.092988e-01	k: 90751	n:100000
KS ci ratio: 1.060454e-01	ci left: 1.276466e-02	ci right 1.420376e-02	k: 1347	n:100000
COL16A1   100000 perm   30 sec   (3371 perm/sec)   p_kst 1.347000e-02   p_cons 9.075100e-01   p_joint 3.281000e-02

Joint ci ratio: 6.639191e-02	ci left: 2.969737e-02	ci right 3.174565e-02	k: 3378	n:110000
Cons ci ratio: 3.767012e-03	ci left: 9.060658e-01	ci right 9.094944e-01	k: 99857	n:110000
KS ci ratio: 1.011727e-01	ci left: 1.278201e-02	ci right 1.415291e-02	k: 1480	n:110000
COL16A1   110000 perm   33 sec   (3333 perm/sec)   p_kst 1.345455e-02   p_cons 9.077909e-01   p_joint 3.070909e-02

Joint ci ratio: 6.499053e-02	ci left: 2.846786e-02	ci right 3.038831e-02	k: 3530	n:120000
Cons ci ratio: 3.603741e-03	ci left: 9.062751e-01	ci right 9.095552e-01	k: 108951	n:120000
KS ci ratio: 9.685443e-02	ci left: 1.281400e-02	ci right 1.412634e-02	k: 1615	n:120000
COL16A1   120000 perm   36 sec   (3293 perm/sec)   p_kst 1.345833e-02   p_cons 9.079250e-01   p_joint 2.941667e-02

Outputting figure to mutsig2_images.part000000000041/COL16A1.5_5095_120000_0.013458_0.90792_0.029417.png
                gene_name: COL16A1
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 57 percent done.
COL4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
Cons ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
KS ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
COL4A3   10000 perm   2 sec   (4574 perm/sec)   p_kst 7.184000e-01   p_cons 9.510000e-01   p_joint 8.342000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A3.5_5295_10000_0.7184_0.951_0.8342.png
                gene_name: COL4A3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 59 percent done.
COLQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
Cons ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
COLQ   10000 perm   2 sec   (5501 perm/sec)   p_kst 8.930000e-02   p_cons 2.196000e-01   p_joint 1.478000e-01

Joint ci ratio: 6.879880e-02	ci left: 1.348245e-01	ci right 1.444805e-01	k: 2792	n:20000
Cons ci ratio: 5.065202e-02	ci left: 2.245786e-01	ci right 2.362998e-01	k: 4608	n:20000
KS ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
COLQ   20000 perm   4 sec   (4996 perm/sec)   p_kst 8.925000e-02   p_cons 2.304000e-01   p_joint 1.396000e-01

Outputting figure to mutsig2_images.part000000000041/COLQ.5_1516_20000_0.08925_0.2304_0.1396.png
                gene_name: COLQ
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
COQ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 3.651132e-02	ci left: 5.255657e-01	ci right 5.452137e-01	k: 5354	n:10000
COQ5   10000 perm   2 sec   (5723 perm/sec)   p_kst 5.354000e-01   p_cons 2.000000e-03   p_joint 4.820000e-02

Joint ci ratio: 1.226379e-01	ci left: 4.561215e-02	ci right 5.161995e-02	k: 971	n:20000
Cons ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
KS ci ratio: 2.579063e-02	ci left: 5.290086e-01	ci right 5.428809e-01	k: 10719	n:20000
COQ5   20000 perm   4 sec   (5228 perm/sec)   p_kst 5.359500e-01   p_cons 1.550000e-03   p_joint 4.855000e-02

Joint ci ratio: 1.310347e-01	ci left: 2.706564e-02	ci right 3.089297e-02	k: 868	n:30000
Cons ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
KS ci ratio: 2.154659e-02	ci left: 5.188634e-01	ci right 5.301985e-01	k: 15736	n:30000
COQ5   30000 perm   6 sec   (4943 perm/sec)   p_kst 5.245333e-01   p_cons 1.566667e-03   p_joint 2.893333e-02

Joint ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
Cons ci ratio: 4.974483e-01	ci left: 1.166699e-03	ci right 1.958501e-03	k: 61	n:40000
KS ci ratio: 1.862305e-02	ci left: 5.206173e-01	ci right 5.304290e-01	k: 21021	n:40000
COQ5   40000 perm   8 sec   (4797 perm/sec)   p_kst 5.255250e-01   p_cons 1.525000e-03   p_joint 3.052500e-02

Joint ci ratio: 1.012600e-01	ci left: 2.762456e-02	ci right 3.059045e-02	k: 1454	n:50000
Cons ci ratio: 4.299143e-01	ci left: 1.304547e-03	ci right 2.035270e-03	k: 82	n:50000
KS ci ratio: 1.668466e-02	ci left: 5.203114e-01	ci right 5.290857e-01	k: 26235	n:50000
COQ5   50000 perm   11 sec   (4677 perm/sec)   p_kst 5.247000e-01   p_cons 1.640000e-03   p_joint 2.908000e-02

Joint ci ratio: 8.660639e-02	ci left: 3.158493e-02	ci right 3.446047e-02	k: 1980	n:60000
Cons ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
KS ci ratio: 1.520558e-02	ci left: 5.215283e-01	ci right 5.295359e-01	k: 31532	n:60000
COQ5   60000 perm   13 sec   (4555 perm/sec)   p_kst 5.255333e-01   p_cons 1.616667e-03   p_joint 3.300000e-02

Joint ci ratio: 8.992515e-02	ci left: 2.523883e-02	ci right 2.762921e-02	k: 1849	n:70000
Cons ci ratio: 3.475256e-01	ci left: 1.499663e-03	ci right 2.142762e-03	k: 126	n:70000
KS ci ratio: 1.407781e-02	ci left: 5.218213e-01	ci right 5.292337e-01	k: 36787	n:70000
COQ5   70000 perm   16 sec   (4458 perm/sec)   p_kst 5.255286e-01   p_cons 1.800000e-03   p_joint 2.641429e-02

Joint ci ratio: 8.255218e-02	ci left: 2.627970e-02	ci right 2.855475e-02	k: 2192	n:80000
Cons ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
KS ci ratio: 1.316443e-02	ci left: 5.222202e-01	ci right 5.291530e-01	k: 42055	n:80000
COQ5   80000 perm   18 sec   (4379 perm/sec)   p_kst 5.256875e-01   p_cons 1.850000e-03   p_joint 2.740000e-02

Joint ci ratio: 9.442634e-02	ci left: 1.790094e-02	ci right 1.968582e-02	k: 1690	n:90000
Cons ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
KS ci ratio: 1.188741e-02	ci left: 5.438854e-01	ci right 5.504005e-01	k: 49243	n:90000
COQ5   90000 perm   21 sec   (4301 perm/sec)   p_kst 5.471444e-01   p_cons 1.744444e-03   p_joint 1.877778e-02

Joint ci ratio: 7.978565e-02	ci left: 2.262877e-02	ci right 2.451900e-02	k: 2356	n:100000
Cons ci ratio: 3.021789e-01	ci left: 1.426484e-03	ci right 1.943110e-03	k: 167	n:100000
KS ci ratio: 1.139429e-02	ci left: 5.389358e-01	ci right 5.451218e-01	k: 54203	n:100000
COQ5   100000 perm   24 sec   (4231 perm/sec)   p_kst 5.420300e-01   p_cons 1.670000e-03   p_joint 2.356000e-02

Joint ci ratio: 7.172477e-02	ci left: 2.548733e-02	ci right 2.739230e-02	k: 2907	n:110000
Cons ci ratio: 2.879604e-01	ci left: 1.439918e-03	ci right 1.932408e-03	k: 184	n:110000
KS ci ratio: 1.087146e-02	ci left: 5.387408e-01	ci right 5.446388e-01	k: 59586	n:110000
COQ5   110000 perm   26 sec   (4170 perm/sec)   p_kst 5.416909e-01   p_cons 1.672727e-03   p_joint 2.642727e-02

Joint ci ratio: 7.306455e-02	ci left: 2.256842e-02	ci right 2.428805e-02	k: 2810	n:120000
Cons ci ratio: 2.769536e-01	ci left: 1.436073e-03	ci right 1.905204e-03	k: 199	n:120000
KS ci ratio: 1.040286e-02	ci left: 5.391425e-01	ci right 5.447888e-01	k: 65036	n:120000
COQ5   120000 perm   29 sec   (4106 perm/sec)   p_kst 5.419667e-01   p_cons 1.658333e-03   p_joint 2.341667e-02

Joint ci ratio: 7.189977e-02	ci left: 2.154950e-02	ci right 2.316421e-02	k: 2905	n:130000
Cons ci ratio: 2.696438e-01	ci left: 1.404421e-03	ci right 1.849054e-03	k: 210	n:130000
KS ci ratio: 9.993930e-03	ci left: 5.392946e-01	ci right 5.447189e-01	k: 70461	n:130000
COQ5   130000 perm   32 sec   (4042 perm/sec)   p_kst 5.420077e-01   p_cons 1.615385e-03   p_joint 2.234615e-02

Joint ci ratio: 6.701439e-02	ci left: 2.305704e-02	ci right 2.466276e-02	k: 3339	n:140000
Cons ci ratio: 2.582638e-01	ci left: 1.430846e-03	ci right 1.861646e-03	k: 229	n:140000
KS ci ratio: 9.633458e-03	ci left: 5.392357e-01	ci right 5.444626e-01	k: 75859	n:140000
COQ5   140000 perm   35 sec   (3972 perm/sec)   p_kst 5.418500e-01   p_cons 1.635714e-03   p_joint 2.385000e-02

Joint ci ratio: 6.563606e-02	ci left: 2.246376e-02	ci right 2.399475e-02	k: 3483	n:150000
Cons ci ratio: 2.477151e-01	ci left: 1.460341e-03	ci right 1.879299e-03	k: 249	n:150000
KS ci ratio: 9.301501e-03	ci left: 5.396079e-01	ci right 5.446571e-01	k: 81320	n:150000
COQ5   150000 perm   38 sec   (3910 perm/sec)   p_kst 5.421333e-01   p_cons 1.660000e-03   p_joint 2.322000e-02

Joint ci ratio: 6.118511e-02	ci left: 2.424665e-02	ci right 2.578313e-02	k: 4001	n:160000
Cons ci ratio: 2.401500e-01	ci left: 1.462959e-03	ci right 1.867942e-03	k: 265	n:160000
KS ci ratio: 9.008791e-03	ci left: 5.395423e-01	ci right 5.444311e-01	k: 86718	n:160000
COQ5   160000 perm   42 sec   (3850 perm/sec)   p_kst 5.419875e-01   p_cons 1.656250e-03   p_joint 2.500625e-02

Joint ci ratio: 5.547314e-02	ci left: 2.774314e-02	ci right 2.933182e-02	k: 4850	n:170000
Cons ci ratio: 2.361929e-01	ci left: 1.426682e-03	ci right 1.814162e-03	k: 274	n:170000
KS ci ratio: 8.733177e-03	ci left: 5.399928e-01	ci right 5.447352e-01	k: 92202	n:170000
COQ5   170000 perm   45 sec   (3790 perm/sec)   p_kst 5.423647e-01   p_cons 1.611765e-03   p_joint 2.852941e-02

Joint ci ratio: 5.805227e-02	ci left: 2.398787e-02	ci right 2.542750e-02	k: 4446	n:180000
Cons ci ratio: 2.284316e-01	ci left: 1.446837e-03	ci right 1.825060e-03	k: 293	n:180000
KS ci ratio: 8.490988e-03	ci left: 5.398338e-01	ci right 5.444426e-01	k: 97585	n:180000
COQ5   180000 perm   48 sec   (3735 perm/sec)   p_kst 5.421389e-01   p_cons 1.627778e-03   p_joint 2.470000e-02

Joint ci ratio: 5.726563e-02	ci left: 2.337873e-02	ci right 2.476216e-02	k: 4572	n:190000
Cons ci ratio: 2.210349e-01	ci left: 1.470028e-03	ci right 1.840180e-03	k: 313	n:190000
KS ci ratio: 8.254049e-03	ci left: 5.405252e-01	ci right 5.450104e-01	k: 103126	n:190000
COQ5   190000 perm   52 sec   (3678 perm/sec)   p_kst 5.427684e-01   p_cons 1.647368e-03   p_joint 2.406316e-02

Joint ci ratio: 5.328727e-02	ci left: 2.564252e-02	ci right 2.705125e-02	k: 5268	n:200000
Cons ci ratio: 2.149588e-01	ci left: 1.481615e-03	ci right 1.843075e-03	k: 331	n:200000
KS ci ratio: 8.047218e-03	ci left: 5.404486e-01	ci right 5.448202e-01	k: 108527	n:200000
COQ5   200000 perm   55 sec   (3622 perm/sec)   p_kst 5.426350e-01   p_cons 1.655000e-03   p_joint 2.634000e-02

Joint ci ratio: 5.441739e-02	ci left: 2.345767e-02	ci right 2.477456e-02	k: 5063	n:210000
Cons ci ratio: 2.090587e-01	ci left: 1.496736e-03	ci right 1.850581e-03	k: 350	n:210000
KS ci ratio: 7.861449e-03	ci left: 5.399852e-01	ci right 5.442517e-01	k: 113845	n:210000
COQ5   210000 perm   59 sec   (3572 perm/sec)   p_kst 5.421190e-01   p_cons 1.666667e-03   p_joint 2.410952e-02

Joint ci ratio: 5.431089e-02	ci left: 2.250320e-02	ci right 2.376395e-02	k: 5088	n:220000
Cons ci ratio: 2.038954e-01	ci left: 1.506292e-03	ci right 1.852505e-03	k: 368	n:220000
KS ci ratio: 7.677624e-03	ci left: 5.402335e-01	ci right 5.444017e-01	k: 119310	n:220000
COQ5   220000 perm   62 sec   (3520 perm/sec)   p_kst 5.423182e-01   p_cons 1.672727e-03   p_joint 2.312727e-02

Joint ci ratio: 5.317503e-02	ci left: 2.246846e-02	ci right 2.370012e-02	k: 5308	n:230000
Cons ci ratio: 2.009251e-01	ci left: 1.486201e-03	ci right 1.822210e-03	k: 379	n:230000
KS ci ratio: 7.504736e-03	ci left: 5.405526e-01	ci right 5.446289e-01	k: 124796	n:230000
COQ5   230000 perm   66 sec   (3470 perm/sec)   p_kst 5.425913e-01   p_cons 1.647826e-03   p_joint 2.307826e-02

Joint ci ratio: 5.360528e-02	ci left: 2.121124e-02	ci right 2.238368e-02	k: 5230	n:240000
Cons ci ratio: 1.970738e-01	ci left: 1.483662e-03	ci right 1.811895e-03	k: 394	n:240000
KS ci ratio: 7.342220e-03	ci left: 5.409002e-01	ci right 5.448904e-01	k: 130295	n:240000
COQ5   240000 perm   70 sec   (3421 perm/sec)   p_kst 5.428958e-01   p_cons 1.641667e-03   p_joint 2.179167e-02

Joint ci ratio: 5.272019e-02	ci left: 2.106528e-02	ci right 2.220984e-02	k: 5408	n:250000
Cons ci ratio: 1.934358e-01	ci left: 1.481382e-03	ci right 1.802349e-03	k: 409	n:250000
KS ci ratio: 7.193818e-03	ci left: 5.409448e-01	ci right 5.448542e-01	k: 135725	n:250000
COQ5   250000 perm   74 sec   (3371 perm/sec)   p_kst 5.429000e-01   p_cons 1.636000e-03   p_joint 2.163200e-02

Joint ci ratio: 5.012656e-02	ci left: 2.240440e-02	ci right 2.356011e-02	k: 5974	n:260000
Cons ci ratio: 1.888824e-01	ci left: 1.497649e-03	ci right 1.813626e-03	k: 429	n:260000
KS ci ratio: 7.054558e-03	ci left: 5.409520e-01	ci right 5.447855e-01	k: 141146	n:260000
COQ5   260000 perm   78 sec   (3325 perm/sec)   p_kst 5.428692e-01   p_cons 1.650000e-03   p_joint 2.297692e-02

Joint ci ratio: 4.766949e-02	ci left: 2.385058e-02	ci right 2.501892e-02	k: 6596	n:270000
Cons ci ratio: 1.858816e-01	ci left: 1.491600e-03	ci right 1.800737e-03	k: 443	n:270000
KS ci ratio: 6.921483e-03	ci left: 5.410742e-01	ci right 5.448359e-01	k: 146598	n:270000
COQ5   270000 perm   82 sec   (3277 perm/sec)   p_kst 5.429556e-01   p_cons 1.640741e-03   p_joint 2.442963e-02

Joint ci ratio: 4.737914e-02	ci left: 2.329858e-02	ci right 2.443274e-02	k: 6681	n:280000
Cons ci ratio: 1.826204e-01	ci left: 1.492836e-03	ci right 1.796200e-03	k: 459	n:280000
KS ci ratio: 6.796691e-03	ci left: 5.411133e-01	ci right 5.448072e-01	k: 152029	n:280000
COQ5   280000 perm   87 sec   (3230 perm/sec)   p_kst 5.429607e-01   p_cons 1.639286e-03   p_joint 2.386071e-02

Joint ci ratio: 4.797925e-02	ci left: 2.195989e-02	ci right 2.304279e-02	k: 6524	n:290000
Cons ci ratio: 1.789611e-01	ci left: 1.503912e-03	ci right 1.802740e-03	k: 478	n:290000
KS ci ratio: 6.678880e-03	ci left: 5.411158e-01	ci right 5.447454e-01	k: 157450	n:290000
COQ5   290000 perm   91 sec   (3190 perm/sec)   p_kst 5.429310e-01   p_cons 1.648276e-03   p_joint 2.249655e-02

Joint ci ratio: 4.841264e-02	ci left: 2.086865e-02	ci right 2.190729e-02	k: 6415	n:300000
Cons ci ratio: 1.767620e-01	ci left: 1.492000e-03	ci right 1.784429e-03	k: 490	n:300000
KS ci ratio: 6.567430e-03	ci left: 5.410853e-01	ci right 5.446539e-01	k: 162861	n:300000
COQ5   300000 perm   95 sec   (3151 perm/sec)   p_kst 5.428700e-01   p_cons 1.633333e-03   p_joint 2.138333e-02

Joint ci ratio: 4.840275e-02	ci left: 2.021761e-02	ci right 2.122364e-02	k: 6422	n:310000
Cons ci ratio: 1.736080e-01	ci left: 1.499390e-03	ci right 1.787474e-03	k: 508	n:310000
KS ci ratio: 6.462430e-03	ci left: 5.409766e-01	ci right 5.444871e-01	k: 168247	n:310000
COQ5   310000 perm   100 sec   (3114 perm/sec)   p_kst 5.427323e-01   p_cons 1.638710e-03   p_joint 2.071613e-02

Joint ci ratio: 4.811009e-02	ci left: 1.983579e-02	ci right 2.081668e-02	k: 6503	n:320000
Cons ci ratio: 1.715982e-01	ci left: 1.488414e-03	ci right 1.770735e-03	k: 520	n:320000
KS ci ratio: 6.363791e-03	ci left: 5.407594e-01	ci right 5.442148e-01	k: 173596	n:320000
COQ5   320000 perm   104 sec   (3071 perm/sec)   p_kst 5.424875e-01   p_cons 1.625000e-03   p_joint 2.032187e-02

Joint ci ratio: 4.739087e-02	ci left: 1.983053e-02	ci right 2.079610e-02	k: 6702	n:330000
Cons ci ratio: 1.680846e-01	ci left: 1.507144e-03	ci right 1.786572e-03	k: 542	n:330000
KS ci ratio: 6.265515e-03	ci left: 5.408741e-01	ci right 5.442766e-01	k: 179050	n:330000
COQ5   330000 perm   109 sec   (3035 perm/sec)   p_kst 5.425758e-01   p_cons 1.642424e-03   p_joint 2.030909e-02

Joint ci ratio: 4.567665e-02	ci left: 2.071841e-02	ci right 2.168977e-02	k: 7208	n:340000
Cons ci ratio: 1.650712e-01	ci left: 1.519189e-03	ci right 1.795299e-03	k: 562	n:340000
KS ci ratio: 6.174544e-03	ci left: 5.407501e-01	ci right 5.441022e-01	k: 184425	n:340000
COQ5   340000 perm   113 sec   (2999 perm/sec)   p_kst 5.424265e-01   p_cons 1.652941e-03   p_joint 2.120000e-02

Joint ci ratio: 4.362258e-02	ci left: 2.205926e-02	ci right 2.304581e-02	k: 7892	n:350000
Cons ci ratio: 1.626340e-01	ci left: 1.522363e-03	ci right 1.794566e-03	k: 579	n:350000
KS ci ratio: 6.085497e-03	ci left: 5.407906e-01	ci right 5.440944e-01	k: 189855	n:350000
COQ5   350000 perm   118 sec   (2964 perm/sec)   p_kst 5.424429e-01   p_cons 1.654286e-03   p_joint 2.254857e-02

Joint ci ratio: 4.443453e-02	ci left: 2.069070e-02	ci right 2.163370e-02	k: 7617	n:360000
Cons ci ratio: 1.607066e-01	ci left: 1.517391e-03	ci right 1.785178e-03	k: 593	n:360000
KS ci ratio: 6.001236e-03	ci left: 5.407431e-01	ci right 5.440007e-01	k: 195254	n:360000
COQ5   360000 perm   123 sec   (2928 perm/sec)   p_kst 5.423722e-01   p_cons 1.647222e-03   p_joint 2.115833e-02

Joint ci ratio: 4.382598e-02	ci left: 2.070081e-02	ci right 2.163103e-02	k: 7830	n:370000
Cons ci ratio: 1.579380e-01	ci left: 1.530875e-03	ci right 1.795947e-03	k: 614	n:370000
KS ci ratio: 5.920702e-03	ci left: 5.406714e-01	ci right 5.438847e-01	k: 200643	n:370000
COQ5   370000 perm   128 sec   (2895 perm/sec)   p_kst 5.422784e-01   p_cons 1.659459e-03   p_joint 2.116216e-02

Joint ci ratio: 4.340190e-02	ci left: 2.055947e-02	ci right 2.147417e-02	k: 7985	n:380000
Cons ci ratio: 1.545791e-01	ci left: 1.558865e-03	ci right 1.822511e-03	k: 641	n:380000
KS ci ratio: 5.844379e-03	ci left: 5.405143e-01	ci right 5.436851e-01	k: 205998	n:380000
COQ5   380000 perm   133 sec   (2863 perm/sec)   p_kst 5.421000e-01   p_cons 1.686842e-03   p_joint 2.101316e-02

Joint ci ratio: 4.331703e-02	ci left: 2.012098e-02	ci right 2.101437e-02	k: 8020	n:390000
Cons ci ratio: 1.525723e-01	ci left: 1.560809e-03	ci right 1.821044e-03	k: 658	n:390000
KS ci ratio: 5.768220e-03	ci left: 5.405989e-01	ci right 5.437287e-01	k: 211444	n:390000
COQ5   390000 perm   138 sec   (2831 perm/sec)   p_kst 5.421641e-01   p_cons 1.687179e-03   p_joint 2.056410e-02

Joint ci ratio: 4.284310e-02	ci left: 2.006062e-02	ci right 2.094135e-02	k: 8199	n:400000
Cons ci ratio: 1.499764e-01	ci left: 1.577113e-03	ci right 1.835191e-03	k: 681	n:400000
KS ci ratio: 5.696942e-03	ci left: 5.405070e-01	ci right 5.435974e-01	k: 216821	n:400000
COQ5   400000 perm   143 sec   (2799 perm/sec)   p_kst 5.420525e-01   p_cons 1.702500e-03   p_joint 2.049750e-02

Joint ci ratio: 4.263700e-02	ci left: 1.976913e-02	ci right 2.063279e-02	k: 8281	n:410000
Cons ci ratio: 1.480354e-01	ci left: 1.580913e-03	ci right 1.835968e-03	k: 699	n:410000
KS ci ratio: 5.626334e-03	ci left: 5.405881e-01	ci right 5.436406e-01	k: 222267	n:410000
COQ5   410000 perm   148 sec   (2768 perm/sec)   p_kst 5.421146e-01   p_cons 1.704878e-03   p_joint 2.019756e-02

Joint ci ratio: 4.230483e-02	ci left: 1.960935e-02	ci right 2.045919e-02	k: 8413	n:420000
Cons ci ratio: 1.462699e-01	ci left: 1.582258e-03	ci right 1.834220e-03	k: 716	n:420000
KS ci ratio: 5.556956e-03	ci left: 5.407847e-01	ci right 5.438005e-01	k: 227763	n:420000
COQ5   420000 perm   153 sec   (2739 perm/sec)   p_kst 5.422929e-01   p_cons 1.704762e-03   p_joint 2.003095e-02

Joint ci ratio: 4.101151e-02	ci left: 2.037781e-02	ci right 2.123332e-02	k: 8945	n:430000
Cons ci ratio: 1.446649e-01	ci left: 1.581316e-03	ci right 1.830126e-03	k: 732	n:430000
KS ci ratio: 5.491907e-03	ci left: 5.408071e-01	ci right 5.437876e-01	k: 233188	n:430000
COQ5   430000 perm   159 sec   (2710 perm/sec)   p_kst 5.422977e-01   p_cons 1.702326e-03   p_joint 2.080233e-02

Joint ci ratio: 4.092579e-02	ci left: 2.000683e-02	ci right 2.084496e-02	k: 8986	n:440000
Cons ci ratio: 1.433033e-01	ci left: 1.576049e-03	ci right 1.821497e-03	k: 746	n:440000
KS ci ratio: 5.427028e-03	ci left: 5.410175e-01	ci right 5.439638e-01	k: 238696	n:440000
COQ5   440000 perm   164 sec   (2682 perm/sec)   p_kst 5.424909e-01   p_cons 1.695455e-03   p_joint 2.042273e-02

Joint ci ratio: 4.144640e-02	ci left: 1.908699e-02	ci right 1.989700e-02	k: 8770	n:450000
Cons ci ratio: 1.418862e-01	ci left: 1.573170e-03	ci right 1.815541e-03	k: 761	n:450000
KS ci ratio: 5.369102e-03	ci left: 5.407830e-01	ci right 5.436965e-01	k: 244008	n:450000
COQ5   450000 perm   170 sec   (2654 perm/sec)   p_kst 5.422400e-01   p_cons 1.691111e-03   p_joint 1.948889e-02

Joint ci ratio: 4.280597e-02	ci left: 1.752095e-02	ci right 1.828949e-02	k: 8235	n:460000
Cons ci ratio: 1.407827e-01	ci left: 1.564134e-03	ci right 1.803082e-03	k: 773	n:460000
KS ci ratio: 5.386674e-03	ci left: 5.337117e-01	ci right 5.365965e-01	k: 246171	n:460000
COQ5   460000 perm   175 sec   (2626 perm/sec)   p_kst 5.351543e-01   p_cons 1.680435e-03   p_joint 1.790217e-02

Joint ci ratio: 4.237646e-02	ci left: 1.750180e-02	ci right 1.826161e-02	k: 8403	n:470000
Cons ci ratio: 1.387356e-01	ci left: 1.578081e-03	ci right 1.815364e-03	k: 796	n:470000
KS ci ratio: 5.328413e-03	ci left: 5.337877e-01	ci right 5.366416e-01	k: 251551	n:470000
COQ5   470000 perm   181 sec   (2599 perm/sec)   p_kst 5.352149e-01   p_cons 1.693617e-03   p_joint 1.787872e-02

Joint ci ratio: 4.125942e-02	ci left: 1.807735e-02	ci right 1.884097e-02	k: 8859	n:480000
Cons ci ratio: 1.376184e-01	ci left: 1.571351e-03	ci right 1.805563e-03	k: 809	n:480000
KS ci ratio: 5.273371e-03	ci left: 5.337315e-01	ci right 5.365556e-01	k: 256869	n:480000
COQ5   480000 perm   187 sec   (2574 perm/sec)   p_kst 5.351438e-01   p_cons 1.685417e-03   p_joint 1.845625e-02

Joint ci ratio: 3.905382e-02	ci left: 1.975334e-02	ci right 2.054215e-02	k: 9871	n:490000
Cons ci ratio: 1.362791e-01	ci left: 1.570816e-03	ci right 1.802486e-03	k: 825	n:490000
KS ci ratio: 5.220964e-03	ci left: 5.335859e-01	ci right 5.363810e-01	k: 262142	n:490000
COQ5   490000 perm   192 sec   (2548 perm/sec)   p_kst 5.349837e-01   p_cons 1.683673e-03   p_joint 2.014490e-02

Joint ci ratio: 3.481521e-02	ci left: 2.429732e-02	ci right 2.516019e-02	k: 12363	n:500000
Cons ci ratio: 1.346582e-01	ci left: 1.578045e-03	ci right 1.807791e-03	k: 845	n:500000
KS ci ratio: 5.170814e-03	ci left: 5.333763e-01	ci right 5.361433e-01	k: 267380	n:500000
COQ5   500000 perm   198 sec   (2522 perm/sec)   p_kst 5.347600e-01   p_cons 1.690000e-03   p_joint 2.472600e-02

Joint ci ratio: 3.482820e-02	ci left: 2.381497e-02	ci right 2.466103e-02	k: 12360	n:510000
Cons ci ratio: 1.333253e-01	ci left: 1.579319e-03	ci right 1.806794e-03	k: 862	n:510000
KS ci ratio: 5.121617e-03	ci left: 5.332201e-01	ci right 5.359599e-01	k: 272641	n:510000
COQ5   510000 perm   204 sec   (2497 perm/sec)   p_kst 5.345902e-01   p_cons 1.690196e-03   p_joint 2.423529e-02

Joint ci ratio: 3.514797e-02	ci left: 2.295078e-02	ci right 2.377377e-02	k: 12147	n:520000
Cons ci ratio: 1.321064e-01	ci left: 1.578695e-03	ci right 1.803838e-03	k: 878	n:520000
KS ci ratio: 5.070836e-03	ci left: 5.333604e-01	ci right 5.360738e-01	k: 278053	n:520000
COQ5   520000 perm   210 sec   (2472 perm/sec)   p_kst 5.347173e-01   p_cons 1.688462e-03   p_joint 2.335962e-02

Joint ci ratio: 3.487341e-02	ci left: 2.287869e-02	ci right 2.369257e-02	k: 12340	n:530000
Cons ci ratio: 1.311407e-01	ci left: 1.572629e-03	ci right 1.795140e-03	k: 891	n:530000
KS ci ratio: 5.021631e-03	ci left: 5.334862e-01	ci right 5.361738e-01	k: 283460	n:530000
COQ5   530000 perm   216 sec   (2449 perm/sec)   p_kst 5.348302e-01   p_cons 1.681132e-03   p_joint 2.328302e-02

Joint ci ratio: 3.570706e-02	ci left: 2.144152e-02	ci right 2.222288e-02	k: 11788	n:540000
Cons ci ratio: 1.297657e-01	ci left: 1.577543e-03	ci right 1.798229e-03	k: 910	n:540000
KS ci ratio: 4.974979e-03	ci left: 5.334926e-01	ci right 5.361552e-01	k: 288805	n:540000
COQ5   540000 perm   223 sec   (2425 perm/sec)   p_kst 5.348241e-01   p_cons 1.685185e-03   p_joint 2.182963e-02

Joint ci ratio: 3.312440e-02	ci left: 2.441945e-02	ci right 2.524374e-02	k: 13656	n:550000
Cons ci ratio: 1.282949e-01	ci left: 1.585810e-03	ci right 1.804947e-03	k: 931	n:550000
KS ci ratio: 4.928810e-03	ci left: 5.335789e-01	ci right 5.362171e-01	k: 294194	n:550000
COQ5   550000 perm   229 sec   (2402 perm/sec)   p_kst 5.348982e-01   p_cons 1.692727e-03   p_joint 2.482909e-02

Joint ci ratio: 3.376317e-02	ci left: 2.310836e-02	ci right 2.390372e-02	k: 13162	n:560000
Cons ci ratio: 1.271406e-01	ci left: 1.586879e-03	ci right 1.804042e-03	k: 948	n:560000
KS ci ratio: 4.884307e-03	ci left: 5.336211e-01	ci right 5.362356e-01	k: 299560	n:560000
COQ5   560000 perm   235 sec   (2379 perm/sec)   p_kst 5.349286e-01   p_cons 1.692857e-03   p_joint 2.350357e-02

Joint ci ratio: 3.370222e-02	ci left: 2.279335e-02	ci right 2.357642e-02	k: 13214	n:570000
Cons ci ratio: 1.262134e-01	ci left: 1.582822e-03	ci right 1.797732e-03	k: 962	n:570000
KS ci ratio: 4.840885e-03	ci left: 5.336725e-01	ci right 5.362640e-01	k: 304932	n:570000
COQ5   570000 perm   242 sec   (2357 perm/sec)   p_kst 5.349684e-01   p_cons 1.687719e-03   p_joint 2.318246e-02

Joint ci ratio: 3.311270e-02	ci left: 2.320230e-02	ci right 2.398522e-02	k: 13683	n:580000
Cons ci ratio: 1.251779e-01	ci left: 1.582251e-03	ci right 1.795190e-03	k: 978	n:580000
KS ci ratio: 4.798268e-03	ci left: 5.337567e-01	ci right 5.363257e-01	k: 310324	n:580000
COQ5   580000 perm   248 sec   (2335 perm/sec)   p_kst 5.350414e-01   p_cons 1.686207e-03   p_joint 2.359138e-02

Joint ci ratio: 3.330558e-02	ci left: 2.255847e-02	ci right 2.332419e-02	k: 13534	n:590000
Cons ci ratio: 1.239182e-01	ci left: 1.588276e-03	ci right 1.799716e-03	k: 998	n:590000
KS ci ratio: 4.758054e-03	ci left: 5.337026e-01	ci right 5.362496e-01	k: 315636	n:590000
COQ5   590000 perm   255 sec   (2313 perm/sec)   p_kst 5.349763e-01   p_cons 1.691525e-03   p_joint 2.293898e-02

Joint ci ratio: 3.303228e-02	ci left: 2.255439e-02	ci right 2.331356e-02	k: 13759	n:600000
Cons ci ratio: 1.228771e-01	ci left: 1.589263e-03	ci right 1.798928e-03	k: 1015	n:600000
KS ci ratio: 4.719466e-03	ci left: 5.335836e-01	ci right 5.361094e-01	k: 320908	n:600000
COQ5   600000 perm   262 sec   (2292 perm/sec)   p_kst 5.348467e-01   p_cons 1.691667e-03   p_joint 2.293167e-02

Joint ci ratio: 3.283536e-02	ci left: 2.245614e-02	ci right 2.320742e-02	k: 13926	n:610000
Cons ci ratio: 1.219209e-01	ci left: 1.588636e-03	ci right 1.796470e-03	k: 1031	n:610000
KS ci ratio: 4.680552e-03	ci left: 5.336014e-01	ci right 5.361064e-01	k: 326261	n:610000
COQ5   610000 perm   269 sec   (2271 perm/sec)   p_kst 5.348541e-01   p_cons 1.690164e-03   p_joint 2.282951e-02

Joint ci ratio: 3.328555e-02	ci left: 2.151633e-02	ci right 2.224622e-02	k: 13565	n:620000
Cons ci ratio: 1.208136e-01	ci left: 1.592728e-03	ci right 1.799070e-03	k: 1050	n:620000
KS ci ratio: 4.641863e-03	ci left: 5.336962e-01	ci right 5.361809e-01	k: 331662	n:620000
COQ5   620000 perm   275 sec   (2251 perm/sec)   p_kst 5.349387e-01   p_cons 1.693548e-03   p_joint 2.187903e-02

Joint ci ratio: 3.385692e-02	ci left: 2.048206e-02	ci right 2.118902e-02	k: 13125	n:630000
Cons ci ratio: 1.200172e-01	ci left: 1.588999e-03	ci right 1.793404e-03	k: 1064	n:630000
KS ci ratio: 4.605058e-03	ci left: 5.336864e-01	ci right 5.361513e-01	k: 336999	n:630000
COQ5   630000 perm   282 sec   (2230 perm/sec)   p_kst 5.349190e-01   p_cons 1.688889e-03   p_joint 2.083333e-02

Joint ci ratio: 3.391932e-02	ci left: 2.009534e-02	ci right 2.079026e-02	k: 13082	n:640000
Cons ci ratio: 1.187413e-01	ci left: 1.599036e-03	ci right 1.802392e-03	k: 1087	n:640000
KS ci ratio: 4.568526e-03	ci left: 5.337411e-01	ci right 5.361867e-01	k: 342377	n:640000
COQ5   640000 perm   290 sec   (2210 perm/sec)   p_kst 5.349641e-01   p_cons 1.698438e-03   p_joint 2.044063e-02

Joint ci ratio: 3.373317e-02	ci left: 2.000888e-02	ci right 2.069694e-02	k: 13228	n:650000
Cons ci ratio: 1.180386e-01	ci left: 1.593843e-03	ci right 1.795255e-03	k: 1100	n:650000
KS ci ratio: 4.533186e-03	ci left: 5.337573e-01	ci right 5.361839e-01	k: 347731	n:650000
COQ5   650000 perm   297 sec   (2191 perm/sec)   p_kst 5.349708e-01   p_cons 1.692308e-03   p_joint 2.035077e-02

Joint ci ratio: 3.481317e-02	ci left: 1.852026e-02	ci right 1.917792e-02	k: 12439	n:660000
Cons ci ratio: 1.172428e-01	ci left: 1.591752e-03	ci right 1.791450e-03	k: 1115	n:660000
KS ci ratio: 4.500340e-03	ci left: 5.335867e-01	ci right 5.359949e-01	k: 352962	n:660000
COQ5   660000 perm   304 sec   (2172 perm/sec)   p_kst 5.347909e-01   p_cons 1.689394e-03   p_joint 1.884697e-02

Joint ci ratio: 3.288658e-02	ci left: 2.042407e-02	ci right 2.110844e-02	k: 13912	n:670000
Cons ci ratio: 1.160525e-01	ci left: 1.601322e-03	ci right 1.800041e-03	k: 1138	n:670000
KS ci ratio: 4.465234e-03	ci left: 5.337511e-01	ci right 5.361412e-01	k: 358414	n:670000
COQ5   670000 perm   311 sec   (2154 perm/sec)   p_kst 5.349463e-01   p_cons 1.698507e-03   p_joint 2.076418e-02

Joint ci ratio: 3.414830e-02	ci left: 1.868557e-02	ci right 1.933618e-02	k: 12926	n:680000
Cons ci ratio: 1.153460e-01	ci left: 1.597765e-03	ci right 1.794754e-03	k: 1152	n:680000
KS ci ratio: 4.431474e-03	ci left: 5.338504e-01	ci right 5.362228e-01	k: 363825	n:680000
COQ5   680000 perm   319 sec   (2135 perm/sec)   p_kst 5.350368e-01   p_cons 1.694118e-03   p_joint 1.900882e-02

Joint ci ratio: 3.388297e-02	ci left: 1.870647e-02	ci right 1.935265e-02	k: 13129	n:690000
Cons ci ratio: 1.145050e-01	ci left: 1.598539e-03	ci right 1.794089e-03	k: 1169	n:690000
KS ci ratio: 4.399352e-03	ci left: 5.338469e-01	ci right 5.362021e-01	k: 369167	n:690000
COQ5   690000 perm   326 sec   (2116 perm/sec)   p_kst 5.350246e-01   p_cons 1.694203e-03   p_joint 1.902754e-02

Joint ci ratio: 3.384959e-02	ci left: 1.848028e-02	ci right 1.911800e-02	k: 13158	n:700000
Cons ci ratio: 1.137781e-01	ci left: 1.596519e-03	ci right 1.790499e-03	k: 1184	n:700000
KS ci ratio: 4.367906e-03	ci left: 5.338450e-01	ci right 5.361833e-01	k: 374510	n:700000
COQ5   700000 perm   334 sec   (2098 perm/sec)   p_kst 5.350143e-01   p_cons 1.691429e-03   p_joint 1.879714e-02

Joint ci ratio: 3.421624e-02	ci left: 1.784005e-02	ci right 1.846248e-02	k: 12886	n:710000
Cons ci ratio: 1.130649e-01	ci left: 1.594560e-03	ci right 1.787007e-03	k: 1199	n:710000
KS ci ratio: 4.336978e-03	ci left: 5.338601e-01	ci right 5.361819e-01	k: 379865	n:710000
COQ5   710000 perm   341 sec   (2080 perm/sec)   p_kst 5.350211e-01   p_cons 1.688732e-03   p_joint 1.814930e-02

Joint ci ratio: 3.414920e-02	ci left: 1.766523e-02	ci right 1.828033e-02	k: 12939	n:720000
Cons ci ratio: 1.125973e-01	ci left: 1.585910e-03	ci right 1.776468e-03	k: 1209	n:720000
KS ci ratio: 4.306649e-03	ci left: 5.338804e-01	ci right 5.361860e-01	k: 385224	n:720000
COQ5   720000 perm   349 sec   (2063 perm/sec)   p_kst 5.350333e-01   p_cons 1.679167e-03   p_joint 1.797083e-02

Joint ci ratio: 3.422355e-02	ci left: 1.735257e-02	ci right 1.795812e-02	k: 12887	n:730000
Cons ci ratio: 1.118145e-01	ci left: 1.586819e-03	ci right 1.776074e-03	k: 1226	n:730000
KS ci ratio: 4.277230e-03	ci left: 5.338673e-01	ci right 5.361570e-01	k: 390559	n:730000
COQ5   730000 perm   357 sec   (2046 perm/sec)   p_kst 5.350123e-01   p_cons 1.679452e-03   p_joint 1.765342e-02

Joint ci ratio: 3.082221e-02	ci left: 2.106075e-02	ci right 2.172138e-02	k: 15828	n:740000
Cons ci ratio: 1.110926e-01	ci left: 1.586395e-03	ci right 1.774297e-03	k: 1242	n:740000
KS ci ratio: 4.247910e-03	ci left: 5.339128e-01	ci right 5.361869e-01	k: 395937	n:740000
COQ5   740000 perm   365 sec   (2029 perm/sec)   p_kst 5.350500e-01   p_cons 1.678378e-03   p_joint 2.138919e-02

Joint ci ratio: 3.103667e-02	ci left: 2.050334e-02	ci right 2.115104e-02	k: 15619	n:750000
Cons ci ratio: 1.107818e-01	ci left: 1.574317e-03	ci right 1.760233e-03	k: 1249	n:750000
KS ci ratio: 4.220158e-03	ci left: 5.338424e-01	ci right 5.361013e-01	k: 401229	n:750000
COQ5   750000 perm   373 sec   (2012 perm/sec)   p_kst 5.349720e-01   p_cons 1.665333e-03   p_joint 2.082533e-02

Joint ci ratio: 3.081318e-02	ci left: 2.052994e-02	ci right 2.117372e-02	k: 15846	n:760000
Cons ci ratio: 1.097329e-01	ci left: 1.584311e-03	ci right 1.769521e-03	k: 1273	n:760000
KS ci ratio: 4.192132e-03	ci left: 5.338700e-01	ci right 5.361140e-01	k: 406594	n:760000
COQ5   760000 perm   381 sec   (1995 perm/sec)   p_kst 5.349921e-01   p_cons 1.675000e-03   p_joint 2.085000e-02

Joint ci ratio: 3.032106e-02	ci left: 2.092323e-02	ci right 2.156869e-02	k: 16358	n:770000
Cons ci ratio: 1.088813e-01	ci left: 1.588999e-03	ci right 1.773224e-03	k: 1293	n:770000
KS ci ratio: 4.164625e-03	ci left: 5.339008e-01	ci right 5.361302e-01	k: 411962	n:770000
COQ5   770000 perm   389 sec   (1979 perm/sec)   p_kst 5.350156e-01   p_cons 1.679221e-03   p_joint 2.124416e-02

Joint ci ratio: 3.156144e-02	ci left: 1.908742e-02	ci right 1.970077e-02	k: 15126	n:780000
Cons ci ratio: 1.079260e-01	ci left: 1.597315e-03	ci right 1.780776e-03	k: 1316	n:780000
KS ci ratio: 4.167813e-03	ci left: 5.303149e-01	ci right 5.325310e-01	k: 414510	n:780000
COQ5   780000 perm   397 sec   (1964 perm/sec)   p_kst 5.314231e-01   p_cons 1.687179e-03   p_joint 1.939231e-02

Joint ci ratio: 3.139548e-02	ci left: 1.904800e-02	ci right 1.965680e-02	k: 15287	n:790000
Cons ci ratio: 1.074785e-01	ci left: 1.590645e-03	ci right 1.772534e-03	k: 1327	n:790000
KS ci ratio: 4.141343e-03	ci left: 5.303229e-01	ci right 5.325250e-01	k: 419825	n:790000
COQ5   790000 perm   405 sec   (1949 perm/sec)   p_kst 5.314241e-01   p_cons 1.679747e-03   p_joint 1.935063e-02

Joint ci ratio: 3.133567e-02	ci left: 1.888552e-02	ci right 1.948796e-02	k: 15348	n:800000
Cons ci ratio: 1.067573e-01	ci left: 1.592659e-03	ci right 1.773480e-03	k: 1345	n:800000
KS ci ratio: 4.114699e-03	ci left: 5.304120e-01	ci right 5.326002e-01	k: 425205	n:800000
COQ5   800000 perm   414 sec   (1934 perm/sec)   p_kst 5.315062e-01   p_cons 1.681250e-03   p_joint 1.918500e-02

Joint ci ratio: 3.202024e-02	ci left: 1.787570e-02	ci right 1.845861e-02	k: 14714	n:810000
Cons ci ratio: 1.061675e-01	ci left: 1.591022e-03	ci right 1.770596e-03	k: 1360	n:810000
KS ci ratio: 4.089008e-03	ci left: 5.304447e-01	ci right 5.326193e-01	k: 430541	n:810000
COQ5   810000 perm   422 sec   (1919 perm/sec)   p_kst 5.315321e-01   p_cons 1.679012e-03   p_joint 1.816543e-02

Joint ci ratio: 3.043713e-02	ci left: 1.952498e-02	ci right 2.012964e-02	k: 16257	n:820000
Cons ci ratio: 1.055874e-01	ci left: 1.589428e-03	ci right 1.767781e-03	k: 1375	n:820000
KS ci ratio: 4.099536e-03	ci left: 5.261126e-01	ci right 5.282750e-01	k: 432299	n:820000
COQ5   820000 perm   430 sec   (1905 perm/sec)   p_kst 5.271939e-01   p_cons 1.676829e-03   p_joint 1.982561e-02

Joint ci ratio: 3.033443e-02	ci left: 1.942363e-02	ci right 2.002310e-02	k: 16369	n:830000
Cons ci ratio: 1.050544e-01	ci left: 1.586701e-03	ci right 1.763794e-03	k: 1389	n:830000
KS ci ratio: 4.074913e-03	ci left: 5.261011e-01	ci right 5.282505e-01	k: 437556	n:830000
COQ5   830000 perm   439 sec   (1891 perm/sec)   p_kst 5.271759e-01   p_cons 1.673494e-03   p_joint 1.972169e-02

Joint ci ratio: 3.014890e-02	ci left: 1.943106e-02	ci right 2.002702e-02	k: 16571	n:840000
Cons ci ratio: 1.045295e-01	ci left: 1.584041e-03	ci right 1.759900e-03	k: 1403	n:840000
KS ci ratio: 4.050389e-03	ci left: 5.261316e-01	ci right 5.282682e-01	k: 442848	n:840000
COQ5   840000 perm   448 sec   (1877 perm/sec)   p_kst 5.272000e-01   p_cons 1.670238e-03   p_joint 1.972738e-02

Joint ci ratio: 3.009418e-02	ci left: 1.927599e-02	ci right 1.986611e-02	k: 16634	n:850000
Cons ci ratio: 1.040492e-01	ci left: 1.580301e-03	ci right 1.754888e-03	k: 1416	n:850000
KS ci ratio: 4.026056e-03	ci left: 5.261921e-01	ci right 5.283160e-01	k: 448166	n:850000
COQ5   850000 perm   456 sec   (1863 perm/sec)   p_kst 5.272541e-01   p_cons 1.665882e-03   p_joint 1.956941e-02

Joint ci ratio: 3.057628e-02	ci left: 1.846667e-02	ci right 1.904123e-02	k: 16127	n:860000
Cons ci ratio: 1.033584e-01	ci left: 1.583445e-03	ci right 1.757148e-03	k: 1435	n:860000
KS ci ratio: 4.002342e-03	ci left: 5.262279e-01	ci right 5.283394e-01	k: 453464	n:860000
COQ5   860000 perm   465 sec   (1850 perm/sec)   p_kst 5.272837e-01   p_cons 1.668605e-03   p_joint 1.875233e-02

Joint ci ratio: 3.039391e-02	ci left: 1.847570e-02	ci right 1.904705e-02	k: 16321	n:870000
Cons ci ratio: 1.027519e-01	ci left: 1.584281e-03	ci right 1.756995e-03	k: 1452	n:870000
KS ci ratio: 3.978906e-03	ci left: 5.262801e-01	ci right 5.283794e-01	k: 458777	n:870000
COQ5   870000 perm   474 sec   (1836 perm/sec)   p_kst 5.273299e-01   p_cons 1.668966e-03   p_joint 1.875977e-02

Joint ci ratio: 3.023996e-02	ci left: 1.845408e-02	ci right 1.902182e-02	k: 16488	n:880000
Cons ci ratio: 1.023655e-01	ci left: 1.578457e-03	ci right 1.749850e-03	k: 1463	n:880000
KS ci ratio: 3.956489e-03	ci left: 5.262540e-01	ci right 5.283413e-01	k: 464022	n:880000
COQ5   880000 perm   483 sec   (1823 perm/sec)   p_kst 5.272977e-01   p_cons 1.662500e-03   p_joint 1.873636e-02

Joint ci ratio: 3.013538e-02	ci left: 1.837608e-02	ci right 1.893942e-02	k: 16604	n:890000
Cons ci ratio: 1.018452e-01	ci left: 1.577145e-03	ci right 1.747473e-03	k: 1478	n:890000
KS ci ratio: 3.933516e-03	ci left: 5.263464e-01	ci right 5.284220e-01	k: 469372	n:890000
COQ5   890000 perm   492 sec   (1810 perm/sec)   p_kst 5.273843e-01   p_cons 1.660674e-03   p_joint 1.865618e-02

Joint ci ratio: 3.005753e-02	ci left: 1.826892e-02	ci right 1.882751e-02	k: 16692	n:900000
Cons ci ratio: 1.013667e-01	ci left: 1.574781e-03	ci right 1.744007e-03	k: 1492	n:900000
KS ci ratio: 3.911583e-03	ci left: 5.263546e-01	ci right 5.284186e-01	k: 474648	n:900000
COQ5   900000 perm   501 sec   (1797 perm/sec)   p_kst 5.273867e-01   p_cons 1.657778e-03   p_joint 1.854667e-02

Joint ci ratio: 2.990860e-02	ci left: 1.825031e-02	ci right 1.880551e-02	k: 16859	n:910000
Cons ci ratio: 1.008614e-01	ci left: 1.573543e-03	ci right 1.741743e-03	k: 1507	n:910000
KS ci ratio: 3.890416e-03	ci left: 5.263110e-01	ci right 5.283636e-01	k: 479877	n:910000
COQ5   910000 perm   510 sec   (1784 perm/sec)   p_kst 5.273374e-01   p_cons 1.656044e-03   p_joint 1.852637e-02

Joint ci ratio: 2.944196e-02	ci left: 1.862596e-02	ci right 1.918360e-02	k: 17391	n:920000
Cons ci ratio: 1.001990e-01	ci left: 1.577632e-03	ci right 1.745096e-03	k: 1527	n:920000
KS ci ratio: 3.869092e-03	ci left: 5.263325e-01	ci right 5.283739e-01	k: 485165	n:920000
COQ5   920000 perm   520 sec   (1771 perm/sec)   p_kst 5.273533e-01   p_cons 1.659783e-03   p_joint 1.890326e-02

Joint ci ratio: 2.804810e-02	ci left: 2.028237e-02	ci right 2.086040e-02	k: 19130	n:930000
Cons ci ratio: 9.974320e-02	ci left: 1.575345e-03	ci right 1.741762e-03	k: 1541	n:930000
KS ci ratio: 3.847607e-03	ci left: 5.264191e-01	ci right 5.284495e-01	k: 490514	n:930000
COQ5   930000 perm   529 sec   (1758 perm/sec)   p_kst 5.274344e-01   p_cons 1.656989e-03   p_joint 2.056989e-02

Outputting figure to mutsig2_images.part000000000041/COQ5.5_1012_930000_0.52743_0.001657_0.02057.png
                gene_name: COQ5
               theta_stop: 0.100 
                    nperm: 930000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.0017 
      ci_cons_bounds_left: 0.0016 
     ci_cons_bounds_right: 0.0017 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 62 percent done.
COL1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
KS ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
COL1A1   10000 perm   2 sec   (5064 perm/sec)   p_kst 9.666000e-01   p_cons 5.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL1A1.4_4599_10000_0.9666_0.5499_1.png
                gene_name: COL1A1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
COL6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.876129e-02	ci left: 1.559077e-01	ci right 1.704891e-01	k: 1631	n:10000
Cons ci ratio: 3.929614e-02	ci left: 4.888518e-01	ci right 5.085490e-01	k: 4987	n:10000
KS ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
COL6A1   10000 perm   2 sec   (4953 perm/sec)   p_kst 8.180000e-02   p_cons 4.987000e-01   p_joint 1.631000e-01

Joint ci ratio: 5.560159e-02	ci left: 1.934859e-01	ci right 2.046018e-01	k: 3980	n:20000
Cons ci ratio: 2.770265e-02	ci left: 4.932959e-01	ci right 5.072041e-01	k: 10005	n:20000
KS ci ratio: 9.039081e-02	ci left: 8.205187e-02	ci right 8.986900e-02	k: 1718	n:20000
COL6A1   20000 perm   4 sec   (4677 perm/sec)   p_kst 8.590000e-02   p_cons 5.002500e-01   p_joint 1.990000e-01

Outputting figure to mutsig2_images.part000000000041/COL6A1.4_3227_20000_0.0859_0.50025_0.199.png
                gene_name: COL6A1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 66 percent done.
COLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.818964e-02	ci left: 6.497142e-01	ci right 6.683930e-01	k: 6591	n:10000
Cons ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
KS ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
COLEC12   10000 perm   2 sec   (5860 perm/sec)   p_kst 1.828000e-01   p_cons 7.124000e-01   p_joint 6.591000e-01

Outputting figure to mutsig2_images.part000000000041/COLEC12.4_2269_10000_0.1828_0.7124_0.6591.png
                gene_name: COLEC12
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 67 percent done.
COQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 3.645999e-02	ci left: 5.262664e-01	ci right 5.459125e-01	k: 5361	n:10000
COQ3   10000 perm   2 sec   (5708 perm/sec)   p_kst 5.361000e-01   p_cons 4.169000e-01   p_joint 6.997000e-01

Outputting figure to mutsig2_images.part000000000041/COQ3.4_1138_10000_0.5361_0.4169_0.6997.png
                gene_name: COQ3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 69 percent done.
COL13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.784578e-02	ci left: 5.076523e-01	ci right 5.273375e-01	k: 5175	n:10000
Cons ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
KS ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
COL13A1   10000 perm   2 sec   (5641 perm/sec)   p_kst 4.013000e-01   p_cons 3.277000e-01   p_joint 5.175000e-01

Outputting figure to mutsig2_images.part000000000041/COL13A1.3_2314_10000_0.4013_0.3277_0.5175.png
                gene_name: COL13A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 71 percent done.
COL6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
COL6A2   10000 perm   2 sec   (5222 perm/sec)   p_kst 5.414000e-01   p_cons 6.521000e-01   p_joint 8.558000e-01

Outputting figure to mutsig2_images.part000000000041/COL6A2.3_3498_10000_0.5414_0.6521_0.8558.png
                gene_name: COL6A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 72 percent done.
COPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
Cons ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
KS ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
COPG   10000 perm   2 sec   (5582 perm/sec)   p_kst 4.441000e-01   p_cons 6.303000e-01   p_joint 7.376000e-01

Outputting figure to mutsig2_images.part000000000041/COPG.3_2721_10000_0.4441_0.6303_0.7376.png
                gene_name: COPG
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 74 percent done.
COPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
Cons ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
KS ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
COPG2   10000 perm   2 sec   (6324 perm/sec)   p_kst 3.130000e-02   p_cons 2.523000e-01   p_joint 8.690000e-02

Joint ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
Cons ci ratio: 4.724112e-02	ci left: 2.500120e-01	ci right 2.621590e-01	k: 5121	n:20000
KS ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
COPG2   20000 perm   4 sec   (5563 perm/sec)   p_kst 3.170000e-02   p_cons 2.560500e-01   p_joint 8.285000e-02

Joint ci ratio: 6.775757e-02	ci left: 9.695570e-02	ci right 1.037886e-01	k: 3010	n:30000
Cons ci ratio: 3.858919e-02	ci left: 2.509693e-01	ci right 2.608780e-01	k: 7677	n:30000
KS ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
COPG2   30000 perm   6 sec   (5272 perm/sec)   p_kst 3.153333e-02   p_cons 2.559000e-01   p_joint 1.003333e-01

Joint ci ratio: 9.742279e-02	ci left: 3.700176e-02	ci right 4.081555e-02	k: 1555	n:40000
Cons ci ratio: 3.354771e-02	ci left: 2.501871e-01	ci right 2.587486e-01	k: 10178	n:40000
KS ci ratio: 1.082803e-01	ci left: 3.000463e-02	ci right 3.346379e-02	k: 1268	n:40000
COPG2   40000 perm   8 sec   (5096 perm/sec)   p_kst 3.170000e-02   p_cons 2.544500e-01   p_joint 3.887500e-02

Joint ci ratio: 8.801249e-02	ci left: 3.647802e-02	ci right 3.985587e-02	k: 1907	n:50000
Cons ci ratio: 3.000403e-02	ci left: 2.506665e-01	ci right 2.583220e-01	k: 12724	n:50000
KS ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
COPG2   50000 perm   10 sec   (4957 perm/sec)   p_kst 3.152000e-02   p_cons 2.544800e-01   p_joint 3.814000e-02

Outputting figure to mutsig2_images.part000000000041/COPG2.3_1259_50000_0.03152_0.25448_0.03814.png
                gene_name: COPG2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 76 percent done.
COPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
COPS2   10000 perm   2 sec   (6288 perm/sec)   p_kst 2.794000e-01   p_cons 7.815000e-01   p_joint 3.047000e-01

Outputting figure to mutsig2_images.part000000000041/COPS2.3_1405_10000_0.2794_0.7815_0.3047.png
                gene_name: COPS2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 78 percent done.
COQ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 3.291093e-02	ci left: 5.767739e-01	ci right 5.961757e-01	k: 5865	n:10000
COQ6   10000 perm   2 sec   (5995 perm/sec)   p_kst 5.865000e-01   p_cons 6.686000e-01   p_joint 8.122000e-01

Outputting figure to mutsig2_images.part000000000041/COQ6.3_1455_10000_0.5865_0.6686_0.8122.png
                gene_name: COQ6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 79 percent done.
COQ9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
COQ9   10000 perm   2 sec   (6152 perm/sec)   p_kst 6.037000e-01   p_cons 8.870000e-02   p_joint 6.257000e-01

Joint ci ratio: 3.093089e-02	ci left: 4.384454e-01	ci right 4.522705e-01	k: 8907	n:20000
Cons ci ratio: 9.001893e-02	ci left: 8.268849e-02	ci right 9.053218e-02	k: 1731	n:20000
KS ci ratio: 2.243342e-02	ci left: 5.973829e-01	ci right 6.109868e-01	k: 12084	n:20000
COQ9   20000 perm   4 sec   (5492 perm/sec)   p_kst 6.042000e-01   p_cons 8.655000e-02   p_joint 4.453500e-01

Outputting figure to mutsig2_images.part000000000041/COQ9.3_993_20000_0.6042_0.08655_0.44535.png
                gene_name: COQ9
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 81 percent done.
COG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
Cons ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
COG7   10000 perm   2 sec   (5862 perm/sec)   p_kst 1.764000e-01   p_cons 2.005000e-01   p_joint 9.508000e-01

Outputting figure to mutsig2_images.part000000000041/COG7.2_2381_10000_0.1764_0.2005_0.9508.png
                gene_name: COG7
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 83 percent done.
COIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
Cons ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
KS ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
COIL   10000 perm   2 sec   (5695 perm/sec)   p_kst 6.219000e-01   p_cons 2.803000e-01   p_joint 4.686000e-01

Outputting figure to mutsig2_images.part000000000041/COIL.2_1759_10000_0.6219_0.2803_0.4686.png
                gene_name: COIL
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 84 percent done.
COL10A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KS ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
COL10A1   10000 perm   2 sec   (6140 perm/sec)   p_kst 9.318000e-01   p_cons 2.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL10A1.2_2051_10000_0.9318_0.245_1.png
                gene_name: COL10A1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
COL9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
Cons ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
KS ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
COL9A2   10000 perm   2 sec   (5568 perm/sec)   p_kst 1.175000e-01   p_cons 7.930000e-01   p_joint 7.449000e-01

Joint ci ratio: 2.547858e-02	ci left: 5.350643e-01	ci right 5.489235e-01	k: 10840	n:20000
Cons ci ratio: 1.515135e-02	ci left: 7.640532e-01	ci right 7.757682e-01	k: 15399	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
COL9A2   20000 perm   4 sec   (5120 perm/sec)   p_kst 1.220500e-01   p_cons 7.699500e-01   p_joint 5.420000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A2.2_2198_20000_0.12205_0.76995_0.542.png
                gene_name: COL9A2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 88 percent done.
COMMD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
Cons ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
KS ci ratio: 4.148685e-02	ci left: 4.617755e-01	ci right 4.814411e-01	k: 4716	n:10000
COMMD10   10000 perm   1 sec   (6844 perm/sec)   p_kst 4.716000e-01   p_cons 4.418000e-01   p_joint 6.492000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD10.2_637_10000_0.4716_0.4418_0.6492.png
                gene_name: COMMD10
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 90 percent done.
COMMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
Cons ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
COMMD2   10000 perm   1 sec   (6790 perm/sec)   p_kst 4.553000e-01   p_cons 7.622000e-01   p_joint 8.944000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD2.2_620_10000_0.4553_0.7622_0.8944.png
                gene_name: COMMD2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
COMMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
COMMD8   10000 perm   1 sec   (6840 perm/sec)   p_kst 8.800000e-03   p_cons 3.378000e-01   p_joint 2.010000e-02

Joint ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
Cons ci ratio: 3.946460e-02	ci left: 3.237819e-01	ci right 3.368675e-01	k: 6606	n:20000
KS ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
COMMD8   20000 perm   3 sec   (6044 perm/sec)   p_kst 9.950000e-03   p_cons 3.303000e-01   p_joint 4.055000e-02

Joint ci ratio: 1.259737e-01	ci left: 2.929380e-02	ci right 3.326432e-02	k: 937	n:30000
Cons ci ratio: 3.228472e-02	ci left: 3.241480e-01	ci right 3.348183e-01	k: 9884	n:30000
KS ci ratio: 2.233110e-01	ci left: 9.030982e-03	ci right 1.133203e-02	k: 304	n:30000
COMMD8   30000 perm   5 sec   (5691 perm/sec)   p_kst 1.013333e-02   p_cons 3.294667e-01   p_joint 3.123333e-02

Joint ci ratio: 1.756349e-01	ci left: 1.121896e-02	ci right 1.340270e-02	k: 491	n:40000
Cons ci ratio: 2.813911e-02	ci left: 3.220542e-01	ci right 3.312710e-01	k: 13066	n:40000
KS ci ratio: 1.916555e-01	ci left: 9.357548e-03	ci right 1.136449e-02	k: 413	n:40000
COMMD8   40000 perm   7 sec   (5486 perm/sec)   p_kst 1.032500e-02   p_cons 3.266500e-01   p_joint 1.227500e-02

Joint ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
Cons ci ratio: 2.510644e-02	ci left: 3.236258e-01	ci right 3.318742e-01	k: 16387	n:50000
KS ci ratio: 1.732067e-01	ci left: 9.261239e-03	ci right 1.103633e-02	k: 506	n:50000
COMMD8   50000 perm   9 sec   (5338 perm/sec)   p_kst 1.012000e-02   p_cons 3.277400e-01   p_joint 1.186000e-02

Joint ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
Cons ci ratio: 2.302913e-02	ci left: 3.218839e-01	ci right 3.293996e-01	k: 19538	n:60000
KS ci ratio: 1.588293e-01	ci left: 9.251315e-03	ci right 1.086327e-02	k: 602	n:60000
COMMD8   60000 perm   12 sec   (5203 perm/sec)   p_kst 1.003333e-02   p_cons 3.256333e-01   p_joint 1.178333e-02

Joint ci ratio: 1.365938e-01	ci left: 1.083373e-02	ci right 1.243570e-02	k: 813	n:70000
Cons ci ratio: 2.128447e-02	ci left: 3.229123e-01	ci right 3.298735e-01	k: 22847	n:70000
KS ci ratio: 1.463660e-01	ci left: 9.400030e-03	ci right 1.089814e-02	k: 709	n:70000
COMMD8   70000 perm   14 sec   (5065 perm/sec)   p_kst 1.012857e-02   p_cons 3.263857e-01   p_joint 1.161429e-02

Joint ci ratio: 1.243855e-01	ci left: 1.149923e-02	ci right 1.303644e-02	k: 980	n:80000
Cons ci ratio: 1.993813e-02	ci left: 3.225150e-01	ci right 3.290226e-01	k: 26061	n:80000
KS ci ratio: 1.358537e-01	ci left: 9.599835e-03	ci right 1.101102e-02	k: 823	n:80000
COMMD8   80000 perm   16 sec   (4950 perm/sec)   p_kst 1.028750e-02   p_cons 3.257625e-01   p_joint 1.225000e-02

Joint ci ratio: 9.880379e-02	ci left: 1.633893e-02	ci right 1.804795e-02	k: 1546	n:90000
Cons ci ratio: 1.876972e-02	ci left: 3.233589e-01	ci right 3.294968e-01	k: 29378	n:90000
KS ci ratio: 1.283643e-01	ci left: 9.596849e-03	ci right 1.092389e-02	k: 922	n:90000
COMMD8   90000 perm   19 sec   (4849 perm/sec)   p_kst 1.024444e-02   p_cons 3.264222e-01   p_joint 1.717778e-02

Joint ci ratio: 1.160556e-01	ci left: 1.062495e-02	ci right 1.194363e-02	k: 1127	n:100000
Cons ci ratio: 1.778724e-02	ci left: 3.239927e-01	ci right 3.298173e-01	k: 32690	n:100000
KS ci ratio: 1.210374e-01	ci left: 9.751357e-03	ci right 1.101728e-02	k: 1037	n:100000
COMMD8   100000 perm   21 sec   (4752 perm/sec)   p_kst 1.037000e-02   p_cons 3.269000e-01   p_joint 1.127000e-02

Joint ci ratio: 1.060715e-01	ci left: 1.161272e-02	ci right 1.292227e-02	k: 1348	n:110000
Cons ci ratio: 1.696931e-02	ci left: 3.238740e-01	ci right 3.294260e-01	k: 35931	n:110000
KS ci ratio: 1.156506e-01	ci left: 9.738230e-03	ci right 1.094234e-02	k: 1136	n:110000
COMMD8   110000 perm   24 sec   (4659 perm/sec)   p_kst 1.032727e-02   p_cons 3.266455e-01   p_joint 1.225455e-02

Joint ci ratio: 1.019647e-01	ci left: 1.154591e-02	ci right 1.279450e-02	k: 1459	n:120000
Cons ci ratio: 1.625659e-02	ci left: 3.237304e-01	ci right 3.290446e-01	k: 39166	n:120000
KS ci ratio: 1.106983e-01	ci left: 9.768858e-03	ci right 1.092166e-02	k: 1240	n:120000
COMMD8   120000 perm   26 sec   (4570 perm/sec)   p_kst 1.033333e-02   p_cons 3.263833e-01   p_joint 1.215833e-02

Joint ci ratio: 6.770409e-02	ci left: 2.428668e-02	ci right 2.599613e-02	k: 3267	n:130000
Cons ci ratio: 1.562345e-02	ci left: 3.237053e-01	ci right 3.288102e-01	k: 42413	n:130000
KS ci ratio: 1.065727e-01	ci left: 9.750767e-03	ci right 1.085586e-02	k: 1338	n:130000
COMMD8   130000 perm   29 sec   (4487 perm/sec)   p_kst 1.029231e-02   p_cons 3.262538e-01   p_joint 2.513077e-02

Joint ci ratio: 6.527352e-02	ci left: 2.429389e-02	ci right 2.594014e-02	k: 3515	n:140000
Cons ci ratio: 1.506679e-02	ci left: 3.234591e-01	ci right 3.283767e-01	k: 45628	n:140000
KS ci ratio: 1.024094e-01	ci left: 9.826443e-03	ci right 1.089398e-02	k: 1449	n:140000
COMMD8   140000 perm   32 sec   (4405 perm/sec)   p_kst 1.035000e-02   p_cons 3.259143e-01   p_joint 2.510714e-02

Joint ci ratio: 5.152029e-02	ci left: 3.620181e-02	ci right 3.812281e-02	k: 5573	n:150000
Cons ci ratio: 1.456545e-02	ci left: 3.232553e-01	ci right 3.280048e-01	k: 48844	n:150000
KS ci ratio: 9.873069e-02	ci left: 9.886252e-03	ci right 1.091947e-02	k: 1559	n:150000
COMMD8   150000 perm   35 sec   (4327 perm/sec)   p_kst 1.039333e-02   p_cons 3.256267e-01   p_joint 3.715333e-02

Outputting figure to mutsig2_images.part000000000041/COMMD8.2_572_150000_0.010393_0.32563_0.037153.png
                gene_name: COMMD8
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 93 percent done.
COMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
COMP   10000 perm   2 sec   (5939 perm/sec)   p_kst 5.935000e-01   p_cons 4.563000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COMP.2_2350_10000_0.5935_0.4563_1.png
                gene_name: COMP
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
COPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
COPS3   10000 perm   2 sec   (6272 perm/sec)   p_kst 9.489000e-01   p_cons 5.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPS3.2_1320_10000_0.9489_0.557_1.png
                gene_name: COPS3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
COPS7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265292e-02	ci left: 8.998033e-01	ci right 9.113592e-01	k: 9057	n:10000
Cons ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
KS ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
COPS7B   10000 perm   2 sec   (6606 perm/sec)   p_kst 2.100000e-01   p_cons 3.947000e-01   p_joint 9.057000e-01

Outputting figure to mutsig2_images.part000000000041/COPS7B.2_819_10000_0.21_0.3947_0.9057.png
                gene_name: COPS7B
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
COPZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
Cons ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
KS ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
COPZ1   10000 perm   1 sec   (6899 perm/sec)   p_kst 3.215000e-01   p_cons 4.907000e-01   p_joint 5.314000e-01

Outputting figure to mutsig2_images.part000000000041/COPZ1.2_570_10000_0.3215_0.4907_0.5314.png
                gene_name: COPZ1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000041
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 41 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 4421840: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000042> was used as the working directory.
Started at Wed Oct 24 17:36:57 2012
Results reported at Wed Oct 24 20:06:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000042.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000042.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 42  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000042.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9088.76 sec.
    Max Memory :      5353 MB
    Max Swap   :      7843 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
42
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 42
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 42: processing genes 3710 - 3800
Calculating significance of each gene.
Using projection method.
3710	CORIN	3.397163e-01
3711	CORO1A	6.863705e-01
3712	CORO1B	9.262384e-01
3713	CORO1C	1
3714	CORO2A	6.674643e-01
3715	CORO2B	8.083195e-01
3716	CORO6	7.093757e-01
3717	CORO7	9.942063e-01
3718	CORT	5.685296e-01
3719	COTL1	8.995207e-02
3720	COX10	1
3721	COX11	5.731308e-01
3722	COX15	9.438952e-01
3723	COX16	1.780269e-01
3724	COX17	1
3725	COX18	2.713536e-01
3726	COX19	2.272010e-01
3727	COX4I1	6.398970e-01
3728	COX4I2	1
3729	COX4NB	1
3730	COX5A	1
3731	COX5B	3.262320e-01
3732	COX6A1	1
3733	COX6A2	1
3734	COX6B1	1
3735	COX6B2	2.412372e-01
3736	COX6C	1
3737	COX7A1	1
3738	COX7A2	1
3739	COX7A2L	3.810155e-01
3740	COX7B	1
In gene COX7B2 the following bins exceed PROBCAP:
    LUAD-17-Z023-TP	categ 6	N = 250     n = 1	mu =   2.01e-06
3741	COX7B2	1.668588e-01
3742	COX7C	1
3743	COX8A	1.407448e-01
3744	COX8C	2.788491e-01
3745	CP	4.374062e-01
3746	CP110	9.218960e-01
3747	CPA1	1.607900e-02
3748	CPA2	2.355567e-01
3749	CPA3	3.134077e-01
3750	CPA4	5.191493e-01
3751	CPA5	8.633022e-01
3752	CPA6	6.757094e-01
3753	CPAMD8	9.508308e-01
3754	CPB1	1.648877e-02
3755	CPB2	8.382663e-01
3756	CPD	1
3757	CPE	1.971078e-01
3758	CPEB1	5.271050e-01
3759	CPEB2	1
3760	CPEB3	8.406216e-01
3761	CPEB4	9.720776e-01
3762	CPLX1	1
3763	CPLX2	4.751027e-02
3764	CPLX3	1
3765	CPLX4	1
3766	CPM	1.702460e-01
3767	CPN1	1
3768	CPN2	1
3769	CPNE1	8.250301e-01
3770	CPNE2	8.383061e-01
3771	CPNE3	8.853830e-01
3772	CPNE4	2.090210e-02
3773	CPNE5	5.736346e-01
3774	CPNE6	4.166407e-01
3775	CPNE7	8.983585e-01
3776	CPNE8	4.466392e-01
3777	CPNE9	1
3778	CPO	7.672985e-01
3779	CPOX	1.798665e-01
3780	CPPED1	5.433878e-01
3781	CPS1	1
3782	CPSF1	9.905177e-01
3783	CPSF2	7.339538e-01
3784	CPSF3	8.839765e-01
3785	CPSF3L	9.047280e-01
3786	CPSF4	6.050867e-01
3787	CPSF6	4.769553e-01
3788	CPSF7	6.577744e-01
3789	CPT1A	4.128791e-01
3790	CPT1B	7.761887e-01
3791	CPT1C	3.285249e-01
3792	CPT2	7.296154e-01
3793	CPVL	3.434876e-02
3794	CPXCR1	7.199604e-06
3795	CPXM1	5.559916e-01
3796	CPXM2	7.202154e-02
3797	CPZ	9.618973e-01
3798	CR1	3.572160e-01
3799	CR1L	7.747097e-01
3800	CR2	7.572689e-01
Done

Running MutSig 2:
Scatter job 42: processing genes 3710 - 3800
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
Cons ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
CPS1   10000 perm   3 sec   (3187 perm/sec)   p_kst 5.373000e-01   p_cons 3.504000e-01   p_joint 5.541000e-01

Outputting figure to mutsig2_images.part000000000042/CPS1.39_4677_10000_0.5373_0.3504_0.5541.png
                gene_name: CPS1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 2 percent done.
CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
CR1   10000 perm   3 sec   (3568 perm/sec)   p_kst 4.740000e-02   p_cons 4.790000e-02   p_joint 1.050000e-02

Joint ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
Cons ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
KS ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
CR1   20000 perm   6 sec   (3297 perm/sec)   p_kst 4.540000e-02   p_cons 5.010000e-02   p_joint 1.595000e-02

Joint ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
Cons ci ratio: 9.837387e-02	ci left: 4.778864e-02	ci right 5.276558e-02	k: 1507	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
CR1   30000 perm   9 sec   (3189 perm/sec)   p_kst 4.506667e-02   p_cons 5.023333e-02   p_joint 2.000000e-02

Joint ci ratio: 1.287484e-01	ci left: 2.118995e-02	ci right 2.412991e-02	k: 905	n:40000
Cons ci ratio: 8.507585e-02	ci left: 4.825181e-02	ci right 5.256376e-02	k: 2015	n:40000
KS ci ratio: 8.969304e-02	ci left: 4.352722e-02	ci right 4.763907e-02	k: 1822	n:40000
CR1   40000 perm   13 sec   (3112 perm/sec)   p_kst 4.555000e-02   p_cons 5.037500e-02   p_joint 2.262500e-02

Joint ci ratio: 1.239209e-01	ci left: 1.840290e-02	ci right 2.085332e-02	k: 980	n:50000
Cons ci ratio: 7.625378e-02	ci left: 4.828257e-02	ci right 5.212987e-02	k: 2509	n:50000
KS ci ratio: 7.945535e-02	ci left: 4.457262e-02	ci right 4.828027e-02	k: 2320	n:50000
CR1   50000 perm   16 sec   (3058 perm/sec)   p_kst 4.640000e-02   p_cons 5.018000e-02   p_joint 1.960000e-02

Joint ci ratio: 1.113146e-01	ci left: 1.912166e-02	ci right 2.139175e-02	k: 1214	n:60000
Cons ci ratio: 6.974416e-02	ci left: 4.826958e-02	ci right 5.177411e-02	k: 3000	n:60000
KS ci ratio: 7.294830e-02	ci left: 4.423920e-02	ci right 4.760490e-02	k: 2754	n:60000
CR1   60000 perm   20 sec   (3017 perm/sec)   p_kst 4.590000e-02   p_cons 5.000000e-02   p_joint 2.023333e-02

Joint ci ratio: 9.396843e-02	ci left: 2.311610e-02	ci right 2.540928e-02	k: 1697	n:70000
Cons ci ratio: 6.435003e-02	ci left: 4.872055e-02	ci right 5.197400e-02	k: 3523	n:70000
KS ci ratio: 6.746194e-02	ci left: 4.445984e-02	ci right 4.757793e-02	k: 3220	n:70000
CR1   70000 perm   23 sec   (2982 perm/sec)   p_kst 4.600000e-02   p_cons 5.032857e-02   p_joint 2.424286e-02

Outputting figure to mutsig2_images.part000000000042/CR1.16_7658_70000_0.046_0.050329_0.024243.png
                gene_name: CR1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 4 percent done.
CORIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
Cons ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
KS ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
CORIN   10000 perm   2 sec   (4465 perm/sec)   p_kst 1.453000e-01   p_cons 7.336000e-01   p_joint 2.722000e-01

Outputting figure to mutsig2_images.part000000000042/CORIN.12_3217_10000_0.1453_0.7336_0.2722.png
                gene_name: CORIN
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 5 percent done.
CPXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
Cons ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
KS ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
CPXCR1   10000 perm   2 sec   (5445 perm/sec)   p_kst 7.055000e-01   p_cons 3.492000e-01   p_joint 5.929000e-01

Outputting figure to mutsig2_images.part000000000042/CPXCR1.10_910_10000_0.7055_0.3492_0.5929.png
                gene_name: CPXCR1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 7 percent done.
CPXM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
Cons ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
KS ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
CPXM2   10000 perm   2 sec   (5088 perm/sec)   p_kst 2.433000e-01   p_cons 4.590000e-02   p_joint 8.240000e-02

Joint ci ratio: 6.338064e-02	ci left: 1.554374e-01	ci right 1.656615e-01	k: 3210	n:20000
Cons ci ratio: 1.277643e-01	ci left: 4.207135e-02	ci right 4.786188e-02	k: 898	n:20000
KS ci ratio: 4.892953e-02	ci left: 2.369695e-01	ci right 2.489054e-01	k: 4858	n:20000
CPXM2   20000 perm   4 sec   (4595 perm/sec)   p_kst 2.429000e-01   p_cons 4.490000e-02   p_joint 1.605000e-01

Joint ci ratio: 5.456110e-02	ci left: 1.427800e-01	ci right 1.508219e-01	k: 4403	n:30000
Cons ci ratio: 1.043401e-01	ci left: 4.258416e-02	ci right 4.730447e-02	k: 1347	n:30000
KS ci ratio: 3.997446e-02	ci left: 2.378571e-01	ci right 2.475927e-01	k: 7281	n:30000
CPXM2   30000 perm   7 sec   (4390 perm/sec)   p_kst 2.427000e-01   p_cons 4.490000e-02   p_joint 1.467667e-01

Joint ci ratio: 5.008017e-02	ci left: 1.294886e-01	ci right 1.361648e-01	k: 5312	n:40000
Cons ci ratio: 8.943632e-02	ci left: 4.377187e-02	ci right 4.789439e-02	k: 1832	n:40000
KS ci ratio: 3.449774e-02	ci left: 2.397972e-01	ci right 2.482399e-01	k: 9760	n:40000
CPXM2   40000 perm   9 sec   (4263 perm/sec)   p_kst 2.440000e-01   p_cons 4.580000e-02   p_joint 1.328000e-01

Outputting figure to mutsig2_images.part000000000042/CPXM2.10_2327_40000_0.244_0.0458_0.1328.png
                gene_name: CPXM2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 9 percent done.
CR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
Cons ci ratio: 3.204321e-02	ci left: 5.897180e-01	ci right 6.090241e-01	k: 5994	n:10000
KS ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
CR1L   10000 perm   2 sec   (4857 perm/sec)   p_kst 3.152000e-01   p_cons 5.994000e-01   p_joint 6.559000e-01

Outputting figure to mutsig2_images.part000000000042/CR1L.10_1758_10000_0.3152_0.5994_0.6559.png
                gene_name: CR1L
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 11 percent done.
CPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
KS ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
CPA1   10000 perm   2 sec   (5241 perm/sec)   p_kst 9.550000e-02   p_cons 8.190000e-02   p_joint 6.590000e-02

Joint ci ratio: 1.249523e-01	ci left: 4.396240e-02	ci right 4.987023e-02	k: 937	n:20000
Cons ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
KS ci ratio: 8.515536e-02	ci left: 9.170598e-02	ci right 9.991197e-02	k: 1915	n:20000
CPA1   20000 perm   4 sec   (4780 perm/sec)   p_kst 9.575000e-02   p_cons 7.625000e-02   p_joint 4.685000e-02

Joint ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
Cons ci ratio: 7.908205e-02	ci left: 7.269856e-02	ci right 7.871725e-02	k: 2270	n:30000
KS ci ratio: 6.919716e-02	ci left: 9.327966e-02	ci right 9.999868e-02	k: 2898	n:30000
CPA1   30000 perm   7 sec   (4571 perm/sec)   p_kst 9.660000e-02   p_cons 7.566667e-02   p_joint 6.470000e-02

Outputting figure to mutsig2_images.part000000000042/CPA1.9_1300_30000_0.0966_0.075667_0.0647.png
                gene_name: CPA1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 12 percent done.
CPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
Cons ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
CPE   10000 perm   2 sec   (5926 perm/sec)   p_kst 6.200000e-02   p_cons 4.368000e-01   p_joint 1.088000e-01

Joint ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
Cons ci ratio: 3.158086e-02	ci left: 4.282140e-01	ci right 4.420049e-01	k: 8702	n:20000
KS ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
CPE   20000 perm   4 sec   (5315 perm/sec)   p_kst 6.330000e-02   p_cons 4.351000e-01   p_joint 6.315000e-02

Joint ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
Cons ci ratio: 2.592326e-02	ci left: 4.268840e-01	ci right 4.381291e-01	k: 12975	n:30000
KS ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
CPE   30000 perm   6 sec   (5073 perm/sec)   p_kst 6.096667e-02   p_cons 4.325000e-01   p_joint 6.026667e-02

Outputting figure to mutsig2_images.part000000000042/CPE.8_1467_30000_0.060967_0.4325_0.060267.png
                gene_name: CPE
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 14 percent done.
CPNE4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
Cons ci ratio: 2.061251e-02	ci left: 7.751944e-01	ci right 7.914402e-01	k: 7834	n:10000
KS ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
CPNE4   10000 perm   2 sec   (5765 perm/sec)   p_kst 5.627000e-01   p_cons 7.834000e-01   p_joint 6.610000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE4.8_1734_10000_0.5627_0.7834_0.661.png
                gene_name: CPNE4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 16 percent done.
CR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
CR2   10000 perm   2 sec   (4686 perm/sec)   p_kst 8.631000e-01   p_cons 5.657000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CR2.8_3355_10000_0.8631_0.5657_1.png
                gene_name: CR2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
CP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
CP   10000 perm   2 sec   (4987 perm/sec)   p_kst 7.860000e-02   p_cons 2.094000e-01   p_joint 4.290000e-02

Joint ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
Cons ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
KS ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
CP   20000 perm   4 sec   (4500 perm/sec)   p_kst 7.650000e-02   p_cons 2.016000e-01   p_joint 5.875000e-02

Joint ci ratio: 7.921421e-02	ci left: 7.246949e-02	ci right 7.847970e-02	k: 2263	n:30000
Cons ci ratio: 4.440061e-02	ci left: 2.016338e-01	ci right 2.108231e-01	k: 6186	n:30000
KS ci ratio: 7.891301e-02	ci left: 7.299309e-02	ci right 7.902266e-02	k: 2279	n:30000
CP   30000 perm   7 sec   (4308 perm/sec)   p_kst 7.596667e-02   p_cons 2.062000e-01   p_joint 7.543333e-02

Outputting figure to mutsig2_images.part000000000042/CP.7_3274_30000_0.075967_0.2062_0.075433.png
                gene_name: CP
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 20 percent done.
CPAMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
CPAMD8   10000 perm   2 sec   (4304 perm/sec)   p_kst 3.000000e-04   p_cons 9.634000e-01   p_joint 1.180000e-02

Joint ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
Cons ci ratio: 5.103814e-03	ci left: 9.646894e-01	ci right 9.696735e-01	k: 19345	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
CPAMD8   20000 perm   5 sec   (3936 perm/sec)   p_kst 3.500000e-04   p_cons 9.672500e-01   p_joint 4.900000e-03

Joint ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
Cons ci ratio: 4.243451e-03	ci left: 9.639555e-01	ci right 9.680869e-01	k: 28982	n:30000
KS ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
CPAMD8   30000 perm   8 sec   (3798 perm/sec)   p_kst 3.000000e-04   p_cons 9.660667e-01   p_joint 4.566667e-03

Joint ci ratio: 3.380645e-01	ci left: 2.784672e-03	ci right 3.939287e-03	k: 133	n:40000
Cons ci ratio: 3.924437e-03	ci left: 9.595426e-01	ci right 9.633400e-01	k: 38459	n:40000
KS ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
CPAMD8   40000 perm   11 sec   (3702 perm/sec)   p_kst 3.000000e-04   p_cons 9.614750e-01   p_joint 3.325000e-03

Joint ci ratio: 3.153926e-01	ci left: 2.594922e-03	ci right 3.584166e-03	k: 153	n:50000
Cons ci ratio: 3.232249e-03	ci left: 9.655401e-01	ci right 9.686854e-01	k: 48357	n:50000
KS ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
CPAMD8   50000 perm   14 sec   (3617 perm/sec)   p_kst 3.000000e-04   p_cons 9.671400e-01   p_joint 3.060000e-03

Joint ci ratio: 3.408139e-01	ci left: 1.825792e-03	ci right 2.590305e-03	k: 131	n:60000
Cons ci ratio: 3.046879e-03	ci left: 9.635325e-01	ci right 9.664890e-01	k: 57902	n:60000
KS ci ratio: 9.505970e-01	ci left: 1.524305e-04	ci right 4.330139e-04	k: 16	n:60000
CPAMD8   60000 perm   17 sec   (3546 perm/sec)   p_kst 2.666667e-04   p_cons 9.650333e-01   p_joint 2.183333e-03

Joint ci ratio: 3.636586e-01	ci left: 1.356532e-03	ci right 1.971677e-03	k: 115	n:70000
Cons ci ratio: 2.807822e-03	ci left: 9.639613e-01	ci right 9.666857e-01	k: 67574	n:70000
KS ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
CPAMD8   70000 perm   20 sec   (3485 perm/sec)   p_kst 3.000000e-04   p_cons 9.653429e-01   p_joint 1.642857e-03

Joint ci ratio: 3.917525e-01	ci left: 1.005889e-03	ci right 1.506409e-03	k: 99	n:80000
Cons ci ratio: 2.648133e-03	ci left: 9.634871e-01	ci right 9.660541e-01	k: 77183	n:80000
KS ci ratio: 8.000416e-01	ci left: 1.822588e-04	ci right 4.313601e-04	k: 23	n:80000
CPAMD8   80000 perm   23 sec   (3428 perm/sec)   p_kst 2.875000e-04   p_cons 9.647875e-01   p_joint 1.237500e-03

Joint ci ratio: 2.157200e-01	ci left: 3.261275e-03	ci right 4.060131e-03	k: 328	n:90000
Cons ci ratio: 2.499854e-03	ci left: 9.634738e-01	ci right 9.658962e-01	k: 86823	n:90000
KS ci ratio: 8.172675e-01	ci left: 1.531982e-04	ci right 3.700686e-04	k: 22	n:90000
CPAMD8   90000 perm   27 sec   (3369 perm/sec)   p_kst 2.444444e-04   p_cons 9.647000e-01   p_joint 3.644444e-03

Joint ci ratio: 2.170878e-01	ci left: 2.897254e-03	ci right 3.612038e-03	k: 324	n:100000
Cons ci ratio: 2.370145e-03	ci left: 9.635783e-01	ci right 9.658746e-01	k: 96474	n:100000
KS ci ratio: 7.838981e-01	ci left: 1.537784e-04	ci right 3.570801e-04	k: 24	n:100000
CPAMD8   100000 perm   30 sec   (3322 perm/sec)   p_kst 2.400000e-04   p_cons 9.647400e-01   p_joint 3.240000e-03

Joint ci ratio: 2.290949e-01	ci left: 2.350541e-03	ci right 2.967056e-03	k: 291	n:110000
Cons ci ratio: 2.262957e-03	ci left: 9.635373e-01	ci right 9.657291e-01	k: 106111	n:110000
KS ci ratio: 7.278265e-01	ci left: 1.691501e-04	ci right 3.678682e-04	k: 28	n:110000
CPAMD8   110000 perm   34 sec   (3280 perm/sec)   p_kst 2.545455e-04   p_cons 9.646455e-01   p_joint 2.645455e-03

Joint ci ratio: 2.344103e-01	ci left: 2.052580e-03	ci right 2.605244e-03	k: 278	n:120000
Cons ci ratio: 2.177016e-03	ci left: 9.632517e-01	ci right 9.653591e-01	k: 115718	n:120000
KS ci ratio: 6.532326e-01	ci left: 2.031647e-04	ci right 4.056146e-04	k: 35	n:120000
CPAMD8   120000 perm   37 sec   (3239 perm/sec)   p_kst 2.916667e-04   p_cons 9.643167e-01   p_joint 2.316667e-03

Joint ci ratio: 2.283595e-01	ci left: 2.003380e-03	ci right 2.526910e-03	k: 293	n:130000
Cons ci ratio: 2.092801e-03	ci left: 9.632538e-01	ci right 9.652793e-01	k: 125356	n:130000
KS ci ratio: 6.443498e-01	ci left: 1.939608e-04	ci right 3.833579e-04	k: 36	n:130000
CPAMD8   130000 perm   41 sec   (3200 perm/sec)   p_kst 2.769231e-04   p_cons 9.642769e-01   p_joint 2.253846e-03

Joint ci ratio: 2.401213e-01	ci left: 1.671976e-03	ci right 2.134759e-03	k: 265	n:140000
Cons ci ratio: 2.027250e-03	ci left: 9.629241e-01	ci right 9.648852e-01	k: 134948	n:140000
KS ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
CPAMD8   140000 perm   44 sec   (3161 perm/sec)   p_kst 2.857143e-04   p_cons 9.639143e-01   p_joint 1.892857e-03

Joint ci ratio: 2.374685e-01	ci left: 1.598110e-03	ci right 2.034841e-03	k: 271	n:150000
Cons ci ratio: 1.958900e-03	ci left: 9.629437e-01	ci right 9.648384e-01	k: 144585	n:150000
KS ci ratio: 5.977067e-01	ci left: 2.018066e-04	ci right 3.784600e-04	k: 42	n:150000
CPAMD8   150000 perm   48 sec   (3124 perm/sec)   p_kst 2.800000e-04   p_cons 9.639000e-01   p_joint 1.806667e-03

Joint ci ratio: 2.315865e-01	ci left: 1.580586e-03	ci right 2.000298e-03	k: 285	n:160000
Cons ci ratio: 1.896858e-03	ci left: 9.629681e-01	ci right 9.648026e-01	k: 154223	n:160000
KS ci ratio: 5.717050e-01	ci left: 2.104936e-04	ci right 3.834663e-04	k: 46	n:160000
CPAMD8   160000 perm   52 sec   (3087 perm/sec)   p_kst 2.875000e-04   p_cons 9.638937e-01   p_joint 1.781250e-03

Joint ci ratio: 2.246256e-01	ci left: 1.587444e-03	ci right 1.994554e-03	k: 303	n:170000
Cons ci ratio: 1.833040e-03	ci left: 9.632702e-01	ci right 9.650433e-01	k: 163908	n:170000
KS ci ratio: 5.435214e-01	ci left: 2.233776e-04	ci right 3.944260e-04	k: 51	n:170000
CPAMD8   170000 perm   56 sec   (3053 perm/sec)   p_kst 3.000000e-04   p_cons 9.641647e-01   p_joint 1.782353e-03

Joint ci ratio: 2.123904e-01	ci left: 1.688324e-03	ci right 2.094654e-03	k: 339	n:180000
Cons ci ratio: 1.784485e-03	ci left: 9.631741e-01	ci right 9.648998e-01	k: 173528	n:180000
KS ci ratio: 5.237491e-01	ci left: 2.301943e-04	ci right 3.977042e-04	k: 55	n:180000
CPAMD8   180000 perm   60 sec   (3019 perm/sec)   p_kst 3.055556e-04   p_cons 9.640444e-01   p_joint 1.883333e-03

Joint ci ratio: 2.102438e-01	ci left: 1.634352e-03	ci right 2.023205e-03	k: 346	n:190000
Cons ci ratio: 1.735624e-03	ci left: 9.632484e-01	ci right 9.649269e-01	k: 183178	n:190000
KS ci ratio: 5.102599e-01	ci left: 2.318070e-04	ci right 3.946058e-04	k: 58	n:190000
CPAMD8   190000 perm   64 sec   (2983 perm/sec)   p_kst 3.052632e-04   p_cons 9.640947e-01   p_joint 1.821053e-03

Joint ci ratio: 2.090499e-01	ci left: 1.571579e-03	ci right 1.943101e-03	k: 350	n:200000
Cons ci ratio: 1.694473e-03	ci left: 9.631541e-01	ci right 9.647924e-01	k: 192796	n:200000
KS ci ratio: 5.059926e-01	ci left: 2.245750e-04	ci right 3.805122e-04	k: 59	n:200000
CPAMD8   200000 perm   68 sec   (2952 perm/sec)   p_kst 2.950000e-04   p_cons 9.639800e-01   p_joint 1.750000e-03

Joint ci ratio: 2.114867e-01	ci left: 1.460644e-03	ci right 1.810486e-03	k: 342	n:210000
Cons ci ratio: 1.655762e-03	ci left: 9.630837e-01	ci right 9.646844e-01	k: 202417	n:210000
KS ci ratio: 4.937983e-01	ci left: 2.263646e-04	ci right 3.784662e-04	k: 62	n:210000
CPAMD8   210000 perm   72 sec   (2920 perm/sec)   p_kst 2.952381e-04   p_cons 9.638905e-01   p_joint 1.628571e-03

Joint ci ratio: 2.172813e-01	ci left: 1.316814e-03	ci right 1.642003e-03	k: 324	n:220000
Cons ci ratio: 1.620001e-03	ci left: 9.630019e-01	ci right 9.645677e-01	k: 212034	n:220000
KS ci ratio: 4.684540e-01	ci left: 2.440358e-04	ci right 3.969104e-04	k: 69	n:220000
CPAMD8   220000 perm   76 sec   (2888 perm/sec)   p_kst 3.136364e-04   p_cons 9.637909e-01   p_joint 1.472727e-03

Joint ci ratio: 2.153071e-01	ci left: 1.284233e-03	ci right 1.598112e-03	k: 330	n:230000
Cons ci ratio: 1.586254e-03	ci left: 9.629364e-01	ci right 9.644693e-01	k: 221653	n:230000
KS ci ratio: 4.619031e-01	ci left: 2.411015e-04	ci right 3.893619e-04	k: 71	n:230000
CPAMD8   230000 perm   81 sec   (2856 perm/sec)   p_kst 3.086957e-04   p_cons 9.637087e-01   p_joint 1.434783e-03

Joint ci ratio: 2.261793e-01	ci left: 1.108682e-03	ci right 1.395248e-03	k: 299	n:240000
Cons ci ratio: 1.551380e-03	ci left: 9.630198e-01	ci right 9.645190e-01	k: 231306	n:240000
KS ci ratio: 4.495827e-01	ci left: 2.458088e-04	ci right 3.917059e-04	k: 75	n:240000
CPAMD8   240000 perm   85 sec   (2826 perm/sec)   p_kst 3.125000e-04   p_cons 9.637750e-01   p_joint 1.245833e-03

Joint ci ratio: 2.239539e-01	ci left: 1.086980e-03	ci right 1.364791e-03	k: 305	n:250000
Cons ci ratio: 1.520185e-03	ci left: 9.630281e-01	ci right 9.644971e-01	k: 240942	n:250000
KS ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
CPAMD8   250000 perm   89 sec   (2797 perm/sec)   p_kst 3.120000e-04   p_cons 9.637680e-01   p_joint 1.220000e-03

Joint ci ratio: 2.228680e-01	ci left: 1.056064e-03	ci right 1.324485e-03	k: 308	n:260000
Cons ci ratio: 1.490799e-03	ci left: 9.630361e-01	ci right 9.644766e-01	k: 250578	n:260000
KS ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
CPAMD8   260000 perm   94 sec   (2766 perm/sec)   p_kst 3.153846e-04   p_cons 9.637615e-01   p_joint 1.184615e-03

Joint ci ratio: 2.210893e-01	ci left: 1.034438e-03	ci right 1.294978e-03	k: 313	n:270000
Cons ci ratio: 1.462278e-03	ci left: 9.630811e-01	ci right 9.644941e-01	k: 260224	n:270000
KS ci ratio: 4.251160e-01	ci left: 2.481618e-04	ci right 3.851625e-04	k: 84	n:270000
CPAMD8   270000 perm   99 sec   (2735 perm/sec)   p_kst 3.111111e-04   p_cons 9.637926e-01   p_joint 1.159259e-03

Joint ci ratio: 2.169819e-01	ci left: 1.038000e-03	ci right 1.293933e-03	k: 325	n:280000
Cons ci ratio: 1.436803e-03	ci left: 9.630511e-01	ci right 9.644393e-01	k: 269850	n:280000
KS ci ratio: 4.226388e-01	ci left: 2.424890e-04	ci right 3.753573e-04	k: 85	n:280000
CPAMD8   280000 perm   103 sec   (2705 perm/sec)   p_kst 3.035714e-04   p_cons 9.637500e-01   p_joint 1.160714e-03

Joint ci ratio: 2.277287e-01	ci left: 9.045096e-04	ci right 1.140128e-03	k: 295	n:290000
Cons ci ratio: 1.411079e-03	ci left: 9.630999e-01	ci right 9.644632e-01	k: 279498	n:290000
KS ci ratio: 4.154547e-01	ci left: 2.433813e-04	ci right 3.738436e-04	k: 88	n:290000
CPAMD8   290000 perm   108 sec   (2677 perm/sec)   p_kst 3.034483e-04   p_cons 9.637862e-01   p_joint 1.017241e-03

Joint ci ratio: 1.590779e-01	ci left: 1.859294e-03	ci right 2.183779e-03	k: 605	n:300000
Cons ci ratio: 1.387748e-03	ci left: 9.630918e-01	ci right 9.644325e-01	k: 289130	n:300000
KS ci ratio: 4.086249e-01	ci left: 2.442319e-04	ci right 3.724132e-04	k: 91	n:300000
CPAMD8   300000 perm   113 sec   (2652 perm/sec)   p_kst 3.033333e-04   p_cons 9.637667e-01   p_joint 2.016667e-03

Joint ci ratio: 1.561417e-01	ci left: 1.870585e-03	ci right 2.190451e-03	k: 628	n:310000
Cons ci ratio: 1.366293e-03	ci left: 9.630454e-01	ci right 9.643653e-01	k: 298750	n:310000
KS ci ratio: 4.000207e-01	ci left: 2.479445e-04	ci right 3.746084e-04	k: 95	n:310000
CPAMD8   310000 perm   118 sec   (2627 perm/sec)   p_kst 3.064516e-04   p_cons 9.637097e-01   p_joint 2.025806e-03

Joint ci ratio: 1.586949e-01	ci left: 1.752083e-03	ci right 2.057050e-03	k: 608	n:320000
Cons ci ratio: 1.343638e-03	ci left: 9.631155e-01	ci right 9.644136e-01	k: 308406	n:320000
KS ci ratio: 3.919381e-01	ci left: 2.514516e-04	ci right 3.766403e-04	k: 99	n:320000
CPAMD8   320000 perm   123 sec   (2603 perm/sec)   p_kst 3.093750e-04   p_cons 9.637687e-01   p_joint 1.900000e-03

Joint ci ratio: 1.617896e-01	ci left: 1.632079e-03	ci right 1.922237e-03	k: 585	n:330000
Cons ci ratio: 1.322645e-03	ci left: 9.631510e-01	ci right 9.644287e-01	k: 318052	n:330000
KS ci ratio: 3.843265e-01	ci left: 2.547704e-04	ci right 3.785252e-04	k: 103	n:330000
CPAMD8   330000 perm   128 sec   (2577 perm/sec)   p_kst 3.121212e-04   p_cons 9.637939e-01   p_joint 1.772727e-03

Joint ci ratio: 1.593606e-01	ci left: 1.634891e-03	ci right 1.920767e-03	k: 603	n:340000
Cons ci ratio: 1.302769e-03	ci left: 9.631756e-01	ci right 9.644341e-01	k: 327695	n:340000
KS ci ratio: 3.806841e-01	ci left: 2.525938e-04	ci right 3.738376e-04	k: 105	n:340000
CPAMD8   340000 perm   133 sec   (2553 perm/sec)   p_kst 3.088235e-04   p_cons 9.638088e-01   p_joint 1.773529e-03

Joint ci ratio: 1.620751e-01	ci left: 1.533328e-03	ci right 1.806457e-03	k: 583	n:350000
Cons ci ratio: 1.284448e-03	ci left: 9.631615e-01	ci right 9.644022e-01	k: 337325	n:350000
KS ci ratio: 3.754089e-01	ci left: 2.531338e-04	ci right 3.725387e-04	k: 108	n:350000
CPAMD8   350000 perm   138 sec   (2530 perm/sec)   p_kst 3.085714e-04   p_cons 9.637857e-01   p_joint 1.665714e-03

Joint ci ratio: 1.632024e-01	ci left: 1.469414e-03	ci right 1.733157e-03	k: 575	n:360000
Cons ci ratio: 1.266121e-03	ci left: 9.631903e-01	ci right 9.644133e-01	k: 346970	n:360000
KS ci ratio: 3.703470e-01	ci left: 2.536547e-04	ci right 3.713012e-04	k: 111	n:360000
CPAMD8   360000 perm   144 sec   (2507 perm/sec)   p_kst 3.083333e-04   p_cons 9.638056e-01   p_joint 1.597222e-03

Joint ci ratio: 1.748392e-01	ci left: 1.238137e-03	ci right 1.477890e-03	k: 501	n:370000
Cons ci ratio: 1.249766e-03	ci left: 9.631496e-01	ci right 9.643567e-01	k: 356590	n:370000
KS ci ratio: 3.687058e-01	ci left: 2.492508e-04	ci right 3.642188e-04	k: 112	n:370000
CPAMD8   370000 perm   149 sec   (2483 perm/sec)   p_kst 3.027027e-04   p_cons 9.637568e-01   p_joint 1.354054e-03

Joint ci ratio: 1.732937e-01	ci left: 1.228206e-03	ci right 1.463714e-03	k: 510	n:380000
Cons ci ratio: 1.233377e-03	ci left: 9.631482e-01	ci right 9.643394e-01	k: 366224	n:380000
KS ci ratio: 3.654861e-01	ci left: 2.474692e-04	ci right 3.603808e-04	k: 114	n:380000
CPAMD8   380000 perm   154 sec   (2460 perm/sec)   p_kst 3.000000e-04   p_cons 9.637474e-01   p_joint 1.342105e-03

Joint ci ratio: 1.712944e-01	ci left: 1.226156e-03	ci right 1.458277e-03	k: 522	n:390000
Cons ci ratio: 1.217169e-03	ci left: 9.631729e-01	ci right 9.643484e-01	k: 375868	n:390000
KS ci ratio: 3.592905e-01	ci left: 2.504465e-04	ci right 3.623264e-04	k: 118	n:390000
CPAMD8   390000 perm   160 sec   (2437 perm/sec)   p_kst 3.025641e-04   p_cons 9.637641e-01   p_joint 1.338462e-03

Joint ci ratio: 1.679541e-01	ci left: 1.245775e-03	ci right 1.476546e-03	k: 543	n:400000
Cons ci ratio: 1.203304e-03	ci left: 9.630956e-01	ci right 9.642577e-01	k: 385472	n:400000
KS ci ratio: 3.533997e-01	ci left: 2.532903e-04	ci right 3.641596e-04	k: 122	n:400000
CPAMD8   400000 perm   166 sec   (2415 perm/sec)   p_kst 3.050000e-04   p_cons 9.636800e-01   p_joint 1.357500e-03

Joint ci ratio: 1.688921e-01	ci left: 1.201370e-03	ci right 1.425285e-03	k: 537	n:410000
Cons ci ratio: 1.188488e-03	ci left: 9.631058e-01	ci right 9.642535e-01	k: 395110	n:410000
KS ci ratio: 3.464278e-01	ci left: 2.582360e-04	ci right 3.685402e-04	k: 127	n:410000
CPAMD8   410000 perm   171 sec   (2392 perm/sec)   p_kst 3.097561e-04   p_cons 9.636829e-01   p_joint 1.309756e-03

Joint ci ratio: 1.698457e-01	ci left: 1.159084e-03	ci right 1.376462e-03	k: 531	n:420000
Cons ci ratio: 1.175843e-03	ci left: 9.630172e-01	ci right 9.641526e-01	k: 404707	n:420000
KS ci ratio: 3.437531e-01	ci left: 2.564367e-04	ci right 3.649385e-04	k: 129	n:420000
CPAMD8   420000 perm   177 sec   (2371 perm/sec)   p_kst 3.071429e-04   p_cons 9.635881e-01   p_joint 1.264286e-03

Joint ci ratio: 1.673472e-01	ci left: 1.167768e-03	ci right 1.383228e-03	k: 547	n:430000
Cons ci ratio: 1.162971e-03	ci left: 9.629703e-01	ci right 9.640932e-01	k: 414320	n:430000
KS ci ratio: 3.411394e-01	ci left: 2.547242e-04	ci right 3.615013e-04	k: 131	n:430000
CPAMD8   430000 perm   183 sec   (2350 perm/sec)   p_kst 3.046512e-04   p_cons 9.635349e-01   p_joint 1.272093e-03

Joint ci ratio: 1.679645e-01	ci left: 1.132517e-03	ci right 1.342322e-03	k: 543	n:440000
Cons ci ratio: 1.150175e-03	ci left: 9.629463e-01	ci right 9.640567e-01	k: 423942	n:440000
KS ci ratio: 3.360849e-01	ci left: 2.572531e-04	ci right 3.631462e-04	k: 135	n:440000
CPAMD8   440000 perm   189 sec   (2330 perm/sec)   p_kst 3.068182e-04   p_cons 9.635045e-01   p_joint 1.234091e-03

Joint ci ratio: 1.678125e-01	ci left: 1.109477e-03	ci right 1.314809e-03	k: 544	n:450000
Cons ci ratio: 1.136605e-03	ci left: 9.629972e-01	ci right 9.640946e-01	k: 433597	n:450000
KS ci ratio: 3.300715e-01	ci left: 2.617186e-04	ci right 3.671130e-04	k: 140	n:450000
CPAMD8   450000 perm   195 sec   (2310 perm/sec)   p_kst 3.111111e-04   p_cons 9.635489e-01   p_joint 1.208889e-03

Joint ci ratio: 1.656974e-01	ci left: 1.114523e-03	ci right 1.317930e-03	k: 558	n:460000
Cons ci ratio: 1.123503e-03	ci left: 9.630460e-01	ci right 9.641307e-01	k: 443252	n:460000
KS ci ratio: 3.254866e-01	ci left: 2.640093e-04	ci right 3.685409e-04	k: 144	n:460000
CPAMD8   460000 perm   201 sec   (2289 perm/sec)   p_kst 3.130435e-04   p_cons 9.635913e-01   p_joint 1.213043e-03

Joint ci ratio: 1.645250e-01	ci left: 1.107128e-03	ci right 1.307613e-03	k: 566	n:470000
Cons ci ratio: 1.110371e-03	ci left: 9.631228e-01	ci right 9.641949e-01	k: 452921	n:470000
KS ci ratio: 3.221709e-01	ci left: 2.642562e-04	ci right 3.675996e-04	k: 147	n:470000
CPAMD8   470000 perm   207 sec   (2270 perm/sec)   p_kst 3.127660e-04   p_cons 9.636617e-01   p_joint 1.204255e-03

Joint ci ratio: 1.632351e-01	ci left: 1.102043e-03	ci right 1.299890e-03	k: 575	n:480000
Cons ci ratio: 1.099449e-03	ci left: 9.630831e-01	ci right 9.641446e-01	k: 462536	n:480000
KS ci ratio: 3.210887e-01	ci left: 2.606660e-04	ci right 3.621924e-04	k: 148	n:480000
CPAMD8   480000 perm   213 sec   (2251 perm/sec)   p_kst 3.083333e-04   p_cons 9.636167e-01   p_joint 1.197917e-03

Joint ci ratio: 1.646745e-01	ci left: 1.059980e-03	ci right 1.252119e-03	k: 565	n:490000
Cons ci ratio: 1.088241e-03	ci left: 9.630842e-01	ci right 9.641348e-01	k: 472170	n:490000
KS ci ratio: 3.179043e-01	ci left: 2.609778e-04	ci right 3.614125e-04	k: 151	n:490000
CPAMD8   490000 perm   220 sec   (2232 perm/sec)   p_kst 3.081633e-04   p_cons 9.636122e-01   p_joint 1.153061e-03

Joint ci ratio: 1.630974e-01	ci left: 1.059878e-03	ci right 1.249978e-03	k: 576	n:500000
Cons ci ratio: 1.077521e-03	ci left: 9.630752e-01	ci right 9.641154e-01	k: 481799	n:500000
KS ci ratio: 3.158336e-01	ci left: 2.594401e-04	ci right 3.585014e-04	k: 153	n:500000
CPAMD8   500000 perm   226 sec   (2213 perm/sec)   p_kst 3.060000e-04   p_cons 9.635980e-01   p_joint 1.152000e-03

Joint ci ratio: 1.640988e-01	ci left: 1.025931e-03	ci right 1.211184e-03	k: 569	n:510000
Cons ci ratio: 1.067888e-03	ci left: 9.630153e-01	ci right 9.640461e-01	k: 491402	n:510000
KS ci ratio: 3.079351e-01	ci left: 2.688121e-04	ci right 3.683815e-04	k: 161	n:510000
CPAMD8   510000 perm   232 sec   (2195 perm/sec)   p_kst 3.156863e-04   p_cons 9.635333e-01   p_joint 1.115686e-03

Joint ci ratio: 1.629597e-01	ci left: 1.020956e-03	ci right 1.203906e-03	k: 577	n:520000
Cons ci ratio: 1.057405e-03	ci left: 9.630313e-01	ci right 9.640520e-01	k: 501043	n:520000
KS ci ratio: 3.051229e-01	ci left: 2.689682e-04	ci right 3.675088e-04	k: 164	n:520000
CPAMD8   520000 perm   239 sec   (2176 perm/sec)   p_kst 3.153846e-04   p_cons 9.635442e-01   p_joint 1.109615e-03

Joint ci ratio: 1.728198e-01	ci left: 8.860023e-04	ci right 1.055378e-03	k: 513	n:530000
Cons ci ratio: 1.047844e-03	ci left: 9.630049e-01	ci right 9.640164e-01	k: 510662	n:530000
KS ci ratio: 2.997212e-01	ci left: 2.743554e-04	ci right 3.727516e-04	k: 170	n:530000
CPAMD8   530000 perm   246 sec   (2158 perm/sec)   p_kst 3.207547e-04   p_cons 9.635132e-01   p_joint 9.679245e-04

Joint ci ratio: 1.703511e-01	ci left: 8.961801e-04	ci right 1.064803e-03	k: 528	n:540000
Cons ci ratio: 1.038154e-03	ci left: 9.630057e-01	ci right 9.640078e-01	k: 520295	n:540000
KS ci ratio: 2.929457e-01	ci left: 2.829887e-04	ci right 3.817613e-04	k: 178	n:540000
CPAMD8   540000 perm   252 sec   (2141 perm/sec)   p_kst 3.296296e-04   p_cons 9.635093e-01   p_joint 9.777778e-04

Joint ci ratio: 1.679853e-01	ci left: 9.060044e-04	ci right 1.073869e-03	k: 543	n:550000
Cons ci ratio: 1.028383e-03	ci left: 9.630303e-01	ci right 9.640230e-01	k: 529941	n:550000
KS ci ratio: 2.897263e-01	ci left: 2.845848e-04	ci right 3.826228e-04	k: 182	n:550000
CPAMD8   550000 perm   259 sec   (2125 perm/sec)   p_kst 3.309091e-04   p_cons 9.635291e-01   p_joint 9.872727e-04

Joint ci ratio: 1.660130e-01	ci left: 9.120701e-04	ci right 1.078876e-03	k: 556	n:560000
Cons ci ratio: 1.019322e-03	ci left: 9.630235e-01	ci right 9.640074e-01	k: 539570	n:560000
KS ci ratio: 2.873804e-01	ci left: 2.844724e-04	ci right 3.815340e-04	k: 185	n:560000
CPAMD8   560000 perm   266 sec   (2108 perm/sec)   p_kst 3.303571e-04   p_cons 9.635179e-01   p_joint 9.928571e-04

Joint ci ratio: 1.291341e-01	ci left: 1.509789e-03	ci right 1.719890e-03	k: 919	n:570000
Cons ci ratio: 1.009967e-03	ci left: 9.630541e-01	ci right 9.640289e-01	k: 549220	n:570000
KS ci ratio: 2.858480e-01	ci left: 2.827382e-04	ci right 3.786008e-04	k: 187	n:570000
CPAMD8   570000 perm   273 sec   (2091 perm/sec)   p_kst 3.280702e-04   p_cons 9.635439e-01   p_joint 1.612281e-03

Joint ci ratio: 1.321933e-01	ci left: 1.413707e-03	ci right 1.615463e-03	k: 877	n:580000
Cons ci ratio: 1.001405e-03	ci left: 9.630454e-01	ci right 9.640120e-01	k: 558848	n:580000
KS ci ratio: 2.835943e-01	ci left: 2.826665e-04	ci right 3.776140e-04	k: 190	n:580000
CPAMD8   580000 perm   280 sec   (2075 perm/sec)   p_kst 3.275862e-04   p_cons 9.635310e-01   p_joint 1.512069e-03

Joint ci ratio: 1.338072e-01	ci left: 1.355334e-03	ci right 1.551309e-03	k: 856	n:590000
Cons ci ratio: 9.928413e-04	ci left: 9.630525e-01	ci right 9.640108e-01	k: 568485	n:590000
KS ci ratio: 2.828554e-01	ci left: 2.794500e-04	ci right 3.730289e-04	k: 191	n:590000
CPAMD8   590000 perm   286 sec   (2060 perm/sec)   p_kst 3.237288e-04   p_cons 9.635339e-01   p_joint 1.450847e-03

Joint ci ratio: 1.331107e-01	ci left: 1.347244e-03	ci right 1.540955e-03	k: 865	n:600000
Cons ci ratio: 9.834425e-04	ci left: 9.631348e-01	ci right 9.640841e-01	k: 578167	n:600000
KS ci ratio: 2.821222e-01	ci left: 2.763410e-04	ci right 3.685962e-04	k: 192	n:600000
CPAMD8   600000 perm   293 sec   (2044 perm/sec)   p_kst 3.200000e-04   p_cons 9.636117e-01   p_joint 1.441667e-03

Joint ci ratio: 1.319726e-01	ci left: 1.348933e-03	ci right 1.541098e-03	k: 880	n:610000
Cons ci ratio: 9.750769e-04	ci left: 9.631583e-01	ci right 9.640996e-01	k: 587815	n:610000
KS ci ratio: 2.799548e-01	ci left: 2.763823e-04	ci right 3.678174e-04	k: 195	n:610000
CPAMD8   610000 perm   301 sec   (2029 perm/sec)   p_kst 3.196721e-04   p_cons 9.636311e-01   p_joint 1.442623e-03

Joint ci ratio: 1.302100e-01	ci left: 1.364617e-03	ci right 1.556219e-03	k: 904	n:620000
Cons ci ratio: 9.675219e-04	ci left: 9.631373e-01	ci right 9.640712e-01	k: 597436	n:620000
KS ci ratio: 2.771409e-01	ci left: 2.779256e-04	ci right 3.687859e-04	k: 199	n:620000
CPAMD8   620000 perm   308 sec   (2013 perm/sec)   p_kst 3.209677e-04   p_cons 9.636065e-01   p_joint 1.458065e-03

Joint ci ratio: 1.286548e-01	ci left: 1.376746e-03	ci right 1.567567e-03	k: 926	n:630000
Cons ci ratio: 9.601176e-04	ci left: 9.631186e-01	ci right 9.640453e-01	k: 607058	n:630000
KS ci ratio: 2.724139e-01	ci left: 2.838599e-04	ci right 3.748067e-04	k: 206	n:630000
CPAMD8   630000 perm   315 sec   (1997 perm/sec)   p_kst 3.269841e-04   p_cons 9.635841e-01   p_joint 1.469841e-03

Joint ci ratio: 1.276264e-01	ci left: 1.377921e-03	ci right 1.567263e-03	k: 941	n:640000
Cons ci ratio: 9.527107e-04	ci left: 9.631131e-01	ci right 9.640327e-01	k: 616688	n:640000
KS ci ratio: 2.691819e-01	ci left: 2.867068e-04	ci right 3.772919e-04	k: 211	n:640000
CPAMD8   640000 perm   323 sec   (1982 perm/sec)   p_kst 3.296875e-04   p_cons 9.635750e-01   p_joint 1.470313e-03

Joint ci ratio: 1.272900e-01	ci left: 1.364169e-03	ci right 1.551089e-03	k: 946	n:650000
Cons ci ratio: 9.453069e-04	ci left: 9.631202e-01	ci right 9.640326e-01	k: 626326	n:650000
KS ci ratio: 2.685498e-01	ci left: 2.837306e-04	ci right 3.731294e-04	k: 212	n:650000
CPAMD8   650000 perm   331 sec   (1967 perm/sec)   p_kst 3.261538e-04   p_cons 9.635785e-01   p_joint 1.455385e-03

Joint ci ratio: 1.255767e-01	ci left: 1.381648e-03	ci right 1.568226e-03	k: 972	n:660000
Cons ci ratio: 9.376679e-04	ci left: 9.631576e-01	ci right 9.640626e-01	k: 635984	n:660000
KS ci ratio: 2.636434e-01	ci left: 2.907446e-04	ci right 3.804035e-04	k: 220	n:660000
CPAMD8   660000 perm   338 sec   (1952 perm/sec)   p_kst 3.333333e-04   p_cons 9.636121e-01   p_joint 1.472727e-03

Joint ci ratio: 1.250642e-01	ci left: 1.372592e-03	ci right 1.557135e-03	k: 980	n:670000
Cons ci ratio: 9.306660e-04	ci left: 9.631593e-01	ci right 9.640576e-01	k: 645619	n:670000
KS ci ratio: 2.612893e-01	ci left: 2.919825e-04	ci right 3.810879e-04	k: 224	n:670000
CPAMD8   670000 perm   346 sec   (1938 perm/sec)   p_kst 3.343284e-04   p_cons 9.636104e-01   p_joint 1.462687e-03

Joint ci ratio: 1.143080e-01	ci left: 1.627762e-03	ci right 1.826521e-03	k: 1173	n:680000
Cons ci ratio: 9.240705e-04	ci left: 9.631418e-01	ci right 9.640337e-01	k: 655241	n:680000
KS ci ratio: 2.601359e-01	ci left: 2.904376e-04	ci right 3.786167e-04	k: 226	n:680000
CPAMD8   680000 perm   353 sec   (1924 perm/sec)   p_kst 3.323529e-04   p_cons 9.635897e-01   p_joint 1.725000e-03

Joint ci ratio: 1.134893e-01	ci left: 1.628107e-03	ci right 1.825389e-03	k: 1190	n:690000
Cons ci ratio: 9.170256e-04	ci left: 9.631700e-01	ci right 9.640551e-01	k: 664894	n:690000
KS ci ratio: 2.595653e-01	ci left: 2.875832e-04	ci right 3.746730e-04	k: 227	n:690000
CPAMD8   690000 perm   361 sec   (1911 perm/sec)   p_kst 3.289855e-04   p_cons 9.636145e-01   p_joint 1.724638e-03

Joint ci ratio: 1.127346e-01	ci left: 1.627059e-03	ci right 1.822816e-03	k: 1206	n:700000
Cons ci ratio: 9.102317e-04	ci left: 9.631902e-01	ci right 9.640688e-01	k: 674542	n:700000
KS ci ratio: 2.567648e-01	ci left: 2.901556e-04	ci right 3.769245e-04	k: 232	n:700000
CPAMD8   700000 perm   369 sec   (1898 perm/sec)   p_kst 3.314286e-04   p_cons 9.636314e-01   p_joint 1.722857e-03

Joint ci ratio: 1.120408e-01	ci left: 1.624675e-03	ci right 1.818863e-03	k: 1221	n:710000
Cons ci ratio: 9.040223e-04	ci left: 9.631759e-01	ci right 9.640484e-01	k: 684166	n:710000
KS ci ratio: 2.551277e-01	ci left: 2.900232e-04	ci right 3.761115e-04	k: 235	n:710000
CPAMD8   710000 perm   377 sec   (1884 perm/sec)   p_kst 3.309859e-04   p_cons 9.636141e-01   p_joint 1.719718e-03

Joint ci ratio: 1.114499e-01	ci left: 1.619661e-03	ci right 1.812161e-03	k: 1234	n:720000
Cons ci ratio: 8.971734e-04	ci left: 9.632221e-01	ci right 9.640880e-01	k: 693833	n:720000
KS ci ratio: 2.509096e-01	ci left: 2.964018e-04	ci right 3.827018e-04	k: 243	n:720000
CPAMD8   720000 perm   385 sec   (1871 perm/sec)   p_kst 3.375000e-04   p_cons 9.636569e-01   p_joint 1.713889e-03

Joint ci ratio: 1.107793e-01	ci left: 1.617451e-03	ci right 1.808456e-03	k: 1249	n:730000
Cons ci ratio: 8.905986e-04	ci left: 9.632574e-01	ci right 9.641170e-01	k: 703493	n:730000
KS ci ratio: 2.493813e-01	ci left: 2.961935e-04	ci right 3.818260e-04	k: 246	n:730000
CPAMD8   730000 perm   393 sec   (1858 perm/sec)   p_kst 3.369863e-04   p_cons 9.636890e-01   p_joint 1.710959e-03

Joint ci ratio: 1.104712e-01	ci left: 1.604790e-03	ci right 1.793739e-03	k: 1256	n:740000
Cons ci ratio: 8.844561e-04	ci left: 9.632686e-01	ci right 9.641223e-01	k: 713136	n:740000
KS ci ratio: 2.493818e-01	ci left: 2.921908e-04	ci right 3.766663e-04	k: 246	n:740000
CPAMD8   740000 perm   401 sec   (1845 perm/sec)   p_kst 3.324324e-04   p_cons 9.636973e-01   p_joint 1.697297e-03

Joint ci ratio: 1.113183e-01	ci left: 1.558760e-03	ci right 1.743790e-03	k: 1237	n:750000
Cons ci ratio: 8.789912e-04	ci left: 9.632354e-01	ci right 9.640837e-01	k: 722746	n:750000
KS ci ratio: 2.464066e-01	ci left: 2.957981e-04	ci right 3.801399e-04	k: 252	n:750000
CPAMD8   750000 perm   409 sec   (1833 perm/sec)   p_kst 3.360000e-04   p_cons 9.636613e-01   p_joint 1.649333e-03

Joint ci ratio: 1.106059e-01	ci left: 1.558719e-03	ci right 1.742482e-03	k: 1253	n:760000
Cons ci ratio: 8.730350e-04	ci left: 9.632506e-01	ci right 9.640932e-01	k: 732392	n:760000
KS ci ratio: 2.449586e-01	ci left: 2.956104e-04	ci right 3.793280e-04	k: 255	n:760000
CPAMD8   760000 perm   418 sec   (1820 perm/sec)   p_kst 3.355263e-04   p_cons 9.636737e-01   p_joint 1.648684e-03

Joint ci ratio: 1.098204e-01	ci left: 1.561208e-03	ci right 1.743873e-03	k: 1271	n:770000
Cons ci ratio: 8.671338e-04	ci left: 9.632707e-01	ci right 9.641076e-01	k: 742042	n:770000
KS ci ratio: 2.430669e-01	ci left: 2.966485e-04	ci right 3.799134e-04	k: 259	n:770000
CPAMD8   770000 perm   426 sec   (1809 perm/sec)   p_kst 3.363636e-04   p_cons 9.636909e-01   p_joint 1.650649e-03

Joint ci ratio: 1.089247e-01	ci left: 1.567379e-03	ci right 1.749174e-03	k: 1292	n:780000
Cons ci ratio: 8.616347e-04	ci left: 9.632671e-01	ci right 9.640987e-01	k: 751674	n:780000
KS ci ratio: 2.403095e-01	ci left: 3.000718e-04	ci right 3.831999e-04	k: 265	n:780000
CPAMD8   780000 perm   434 sec   (1797 perm/sec)   p_kst 3.397436e-04   p_cons 9.636846e-01   p_joint 1.656410e-03

Joint ci ratio: 1.083814e-01	ci left: 1.563547e-03	ci right 1.743936e-03	k: 1305	n:790000
Cons ci ratio: 8.561769e-04	ci left: 9.632687e-01	ci right 9.640950e-01	k: 761310	n:790000
KS ci ratio: 2.389658e-01	ci left: 2.998429e-04	ci right 3.823743e-04	k: 268	n:790000
CPAMD8   790000 perm   442 sec   (1786 perm/sec)   p_kst 3.392405e-04   p_cons 9.636835e-01   p_joint 1.651899e-03

Joint ci ratio: 1.076421e-01	ci left: 1.565895e-03	ci right 1.745244e-03	k: 1323	n:800000
Cons ci ratio: 8.510038e-04	ci left: 9.632552e-01	ci right 9.640765e-01	k: 770934	n:800000
KS ci ratio: 2.380826e-01	ci left: 2.984455e-04	ci right 3.802438e-04	k: 270	n:800000
CPAMD8   800000 perm   451 sec   (1775 perm/sec)   p_kst 3.375000e-04   p_cons 9.636675e-01   p_joint 1.653750e-03

Joint ci ratio: 1.069576e-01	ci left: 1.566988e-03	ci right 1.745248e-03	k: 1340	n:810000
Cons ci ratio: 8.461616e-04	ci left: 9.632221e-01	ci right 9.640387e-01	k: 780542	n:810000
KS ci ratio: 2.372091e-01	ci left: 2.970831e-04	ci right 3.781653e-04	k: 272	n:810000
CPAMD8   810000 perm   459 sec   (1763 perm/sec)   p_kst 3.358025e-04   p_cons 9.636321e-01   p_joint 1.654321e-03

Joint ci ratio: 1.063645e-01	ci left: 1.565683e-03	ci right 1.742746e-03	k: 1355	n:820000
Cons ci ratio: 8.404786e-04	ci left: 9.632672e-01	ci right 9.640783e-01	k: 790213	n:820000
KS ci ratio: 2.359164e-01	ci left: 2.969018e-04	ci right 3.774286e-04	k: 275	n:820000
CPAMD8   820000 perm   468 sec   (1752 perm/sec)   p_kst 3.353659e-04   p_cons 9.636744e-01   p_joint 1.652439e-03

Joint ci ratio: 1.186009e-01	ci left: 1.236485e-03	ci right 1.393534e-03	k: 1090	n:830000
Cons ci ratio: 8.868297e-04	ci left: 9.588243e-01	ci right 9.596761e-01	k: 796179	n:830000
KS ci ratio: 2.342251e-01	ci left: 2.978602e-04	ci right 3.779838e-04	k: 279	n:830000
CPAMD8   830000 perm   477 sec   (1740 perm/sec)   p_kst 3.361446e-04   p_cons 9.592518e-01   p_joint 1.313253e-03

Joint ci ratio: 1.199299e-01	ci left: 1.194044e-03	ci right 1.347523e-03	k: 1066	n:840000
Cons ci ratio: 8.815017e-04	ci left: 9.588298e-01	ci right 9.596766e-01	k: 805774	n:840000
KS ci ratio: 2.321612e-01	ci left: 2.999189e-04	ci right 3.797834e-04	k: 284	n:840000
CPAMD8   840000 perm   486 sec   (1730 perm/sec)   p_kst 3.380952e-04   p_cons 9.592548e-01   p_joint 1.269048e-03

Joint ci ratio: 1.195389e-01	ci left: 1.187985e-03	ci right 1.340152e-03	k: 1073	n:850000
Cons ci ratio: 8.763082e-04	ci left: 9.588317e-01	ci right 9.596734e-01	k: 815366	n:850000
KS ci ratio: 2.309489e-01	ci left: 2.997151e-04	ci right 3.790492e-04	k: 287	n:850000
CPAMD8   850000 perm   494 sec   (1719 perm/sec)   p_kst 3.376471e-04   p_cons 9.592541e-01   p_joint 1.262353e-03

Joint ci ratio: 1.186580e-01	ci left: 1.192222e-03	ci right 1.343727e-03	k: 1089	n:860000
Cons ci ratio: 8.718272e-04	ci left: 9.587774e-01	ci right 9.596148e-01	k: 824910	n:860000
KS ci ratio: 2.289697e-01	ci left: 3.017091e-04	ci right 3.807899e-04	k: 292	n:860000
CPAMD8   860000 perm   504 sec   (1708 perm/sec)   p_kst 3.395349e-04   p_cons 9.591977e-01   p_joint 1.266279e-03

Joint ci ratio: 1.180103e-01	ci left: 1.191903e-03	ci right 1.342483e-03	k: 1101	n:870000
Cons ci ratio: 8.666490e-04	ci left: 9.587938e-01	ci right 9.596262e-01	k: 834514	n:870000
KS ci ratio: 2.270405e-01	ci left: 3.036601e-04	ci right 3.824878e-04	k: 297	n:870000
CPAMD8   870000 perm   512 sec   (1698 perm/sec)   p_kst 3.413793e-04   p_cons 9.592115e-01   p_joint 1.265517e-03

Joint ci ratio: 1.170578e-01	ci left: 1.198212e-03	ci right 1.348283e-03	k: 1119	n:880000
Cons ci ratio: 8.616246e-04	ci left: 9.588040e-01	ci right 9.596316e-01	k: 844113	n:880000
KS ci ratio: 2.240524e-01	ci left: 3.087869e-04	ci right 3.877448e-04	k: 305	n:880000
CPAMD8   880000 perm   521 sec   (1688 perm/sec)   p_kst 3.465909e-04   p_cons 9.592193e-01   p_joint 1.271591e-03

Joint ci ratio: 1.165388e-01	ci left: 1.195657e-03	ci right 1.344698e-03	k: 1129	n:890000
Cons ci ratio: 8.569325e-04	ci left: 9.587915e-01	ci right 9.596145e-01	k: 853692	n:890000
KS ci ratio: 2.233240e-01	ci left: 3.074386e-04	ci right 3.857611e-04	k: 307	n:890000
CPAMD8   890000 perm   530 sec   (1679 perm/sec)   p_kst 3.449438e-04   p_cons 9.592045e-01   p_joint 1.268539e-03

Joint ci ratio: 1.158742e-01	ci left: 1.196396e-03	ci right 1.344621e-03	k: 1142	n:900000
Cons ci ratio: 8.522315e-04	ci left: 9.587870e-01	ci right 9.596056e-01	k: 863278	n:900000
KS ci ratio: 2.233244e-01	ci left: 3.040226e-04	ci right 3.814749e-04	k: 307	n:900000
CPAMD8   900000 perm   539 sec   (1669 perm/sec)   p_kst 3.411111e-04   p_cons 9.591978e-01   p_joint 1.268889e-03

Joint ci ratio: 1.152707e-01	ci left: 1.196055e-03	ci right 1.343413e-03	k: 1154	n:910000
Cons ci ratio: 8.474523e-04	ci left: 9.587971e-01	ci right 9.596110e-01	k: 872877	n:910000
KS ci ratio: 2.218881e-01	ci left: 3.048322e-04	ci right 3.819232e-04	k: 311	n:910000
CPAMD8   910000 perm   548 sec   (1660 perm/sec)   p_kst 3.417582e-04   p_cons 9.592055e-01   p_joint 1.268132e-03

Joint ci ratio: 1.147258e-01	ci left: 1.194667e-03	ci right 1.341111e-03	k: 1165	n:920000
Cons ci ratio: 8.428462e-04	ci left: 9.587981e-01	ci right 9.596077e-01	k: 882468	n:920000
KS ci ratio: 2.201311e-01	ci left: 3.066528e-04	ci right 3.835069e-04	k: 316	n:920000
CPAMD8   920000 perm   557 sec   (1651 perm/sec)   p_kst 3.434783e-04   p_cons 9.592043e-01   p_joint 1.266304e-03

Joint ci ratio: 1.214860e-01	ci left: 1.050331e-03	ci right 1.187215e-03	k: 1039	n:930000
Cons ci ratio: 8.384412e-04	ci left: 9.587873e-01	ci right 9.595926e-01	k: 892048	n:930000
KS ci ratio: 2.190968e-01	ci left: 3.064038e-04	ci right 3.827862e-04	k: 319	n:930000
CPAMD8   930000 perm   566 sec   (1642 perm/sec)   p_kst 3.430108e-04   p_cons 9.591914e-01   p_joint 1.117204e-03

Joint ci ratio: 1.219572e-01	ci left: 1.030905e-03	ci right 1.165816e-03	k: 1031	n:940000
Cons ci ratio: 8.338777e-04	ci left: 9.587981e-01	ci right 9.595990e-01	k: 901648	n:940000
KS ci ratio: 2.174048e-01	ci left: 3.081726e-04	ci right 3.843234e-04	k: 324	n:940000
CPAMD8   940000 perm   576 sec   (1631 perm/sec)   p_kst 3.446809e-04   p_cons 9.592000e-01   p_joint 1.096809e-03

Joint ci ratio: 1.213706e-01	ci left: 1.030260e-03	ci right 1.164391e-03	k: 1041	n:950000
Cons ci ratio: 8.292987e-04	ci left: 9.588172e-01	ci right 9.596137e-01	k: 911256	n:950000
KS ci ratio: 2.160791e-01	ci left: 3.089107e-04	ci right 3.847166e-04	k: 328	n:950000
CPAMD8   950000 perm   586 sec   (1622 perm/sec)   p_kst 3.452632e-04   p_cons 9.592168e-01   p_joint 1.095789e-03

Joint ci ratio: 1.122039e-01	ci left: 1.198531e-03	ci right 1.342006e-03	k: 1218	n:960000
Cons ci ratio: 8.251017e-04	ci left: 9.588065e-01	ci right 9.595990e-01	k: 920836	n:960000
KS ci ratio: 2.180778e-01	ci left: 2.997825e-04	ci right 3.741201e-04	k: 322	n:960000
CPAMD8   960000 perm   595 sec   (1613 perm/sec)   p_kst 3.354167e-04   p_cons 9.592042e-01   p_joint 1.268750e-03

Joint ci ratio: 1.121126e-01	ci left: 1.188178e-03	ci right 1.330291e-03	k: 1220	n:970000
Cons ci ratio: 8.208595e-04	ci left: 9.588065e-01	ci right 9.595949e-01	k: 930426	n:970000
KS ci ratio: 2.170721e-01	ci left: 2.996162e-04	ci right 3.735243e-04	k: 325	n:970000
CPAMD8   970000 perm   605 sec   (1604 perm/sec)   p_kst 3.350515e-04   p_cons 9.592021e-01   p_joint 1.257732e-03

Joint ci ratio: 1.132805e-01	ci left: 1.151262e-03	ci right 1.290489e-03	k: 1195	n:980000
Cons ci ratio: 8.166076e-04	ci left: 9.588136e-01	ci right 9.595979e-01	k: 940023	n:980000
KS ci ratio: 2.160802e-01	ci left: 2.994541e-04	ci right 3.729398e-04	k: 328	n:980000
CPAMD8   980000 perm   614 sec   (1595 perm/sec)   p_kst 3.346939e-04   p_cons 9.592071e-01   p_joint 1.219388e-03

Joint ci ratio: 1.135190e-01	ci left: 1.134725e-03	ci right 1.272260e-03	k: 1190	n:990000
Cons ci ratio: 8.128405e-04	ci left: 9.587801e-01	ci right 9.595607e-01	k: 949580	n:990000
KS ci ratio: 2.151018e-01	ci left: 2.992960e-04	ci right 3.723664e-04	k: 331	n:990000
CPAMD8   990000 perm   624 sec   (1587 perm/sec)   p_kst 3.343434e-04   p_cons 9.591717e-01   p_joint 1.202020e-03

Joint ci ratio: 1.132345e-01	ci left: 1.129207e-03	ci right 1.265708e-03	k: 1196	n:1000000
Cons ci ratio: 8.092276e-04	ci left: 9.587371e-01	ci right 9.595142e-01	k: 959127	n:1000000
KS ci ratio: 2.141365e-01	ci left: 2.991418e-04	ci right 3.718038e-04	k: 334	n:1000000
CPAMD8   1000000 perm   634 sec   (1578 perm/sec)   p_kst 3.340000e-04   p_cons 9.591270e-01   p_joint 1.196000e-03

Joint ci ratio: 1.129521e-01	ci left: 1.123799e-03	ci right 1.259285e-03	k: 1202	n:1010000
Cons ci ratio: 8.054481e-04	ci left: 9.587159e-01	ci right 9.594894e-01	k: 968695	n:1010000
KS ci ratio: 2.141369e-01	ci left: 2.961799e-04	ci right 3.681226e-04	k: 334	n:1010000
CPAMD8   1010000 perm   644 sec   (1569 perm/sec)   p_kst 3.306931e-04   p_cons 9.591040e-01   p_joint 1.190099e-03

Joint ci ratio: 1.137603e-01	ci left: 1.096587e-03	ci right 1.229801e-03	k: 1185	n:1020000
Cons ci ratio: 8.013201e-04	ci left: 9.587345e-01	ci right 9.595040e-01	k: 978303	n:1020000
KS ci ratio: 2.128697e-01	ci left: 2.969881e-04	ci right 3.686445e-04	k: 338	n:1020000
CPAMD8   1020000 perm   654 sec   (1560 perm/sec)   p_kst 3.313725e-04   p_cons 9.591206e-01   p_joint 1.161765e-03

Joint ci ratio: 1.134740e-01	ci left: 1.091600e-03	ci right 1.223852e-03	k: 1191	n:1030000
Cons ci ratio: 7.975905e-04	ci left: 9.587196e-01	ci right 9.594856e-01	k: 987877	n:1030000
KS ci ratio: 2.116248e-01	ci left: 2.977818e-04	ci right 3.691550e-04	k: 342	n:1030000
CPAMD8   1030000 perm   664 sec   (1552 perm/sec)   p_kst 3.320388e-04   p_cons 9.591039e-01   p_joint 1.156311e-03

Joint ci ratio: 1.129071e-01	ci left: 1.092316e-03	ci right 1.223950e-03	k: 1203	n:1040000
Cons ci ratio: 7.936497e-04	ci left: 9.587311e-01	ci right 9.594933e-01	k: 997478	n:1040000
KS ci ratio: 2.107053e-01	ci left: 2.976506e-04	ci right 3.686424e-04	k: 345	n:1040000
CPAMD8   1040000 perm   674 sec   (1544 perm/sec)   p_kst 3.317308e-04   p_cons 9.591135e-01   p_joint 1.156731e-03

Joint ci ratio: 1.125340e-01	ci left: 1.089317e-03	ci right 1.220127e-03	k: 1211	n:1050000
Cons ci ratio: 7.899872e-04	ci left: 9.587204e-01	ci right 9.594790e-01	k: 1007056	n:1050000
KS ci ratio: 2.094978e-01	ci left: 2.984249e-04	ci right 3.691412e-04	k: 349	n:1050000
CPAMD8   1050000 perm   684 sec   (1536 perm/sec)   p_kst 3.323810e-04   p_cons 9.591010e-01   p_joint 1.153333e-03

Joint ci ratio: 1.119352e-01	ci left: 1.090960e-03	ci right 1.221224e-03	k: 1224	n:1060000
Cons ci ratio: 7.861953e-04	ci left: 9.587279e-01	ci right 9.594828e-01	k: 1016653	n:1060000
KS ci ratio: 2.086057e-01	ci left: 2.982916e-04	ci right 3.686368e-04	k: 352	n:1060000
CPAMD8   1060000 perm   694 sec   (1528 perm/sec)   p_kst 3.320755e-04   p_cons 9.591066e-01   p_joint 1.154717e-03

Joint ci ratio: 1.115717e-01	ci left: 1.088032e-03	ci right 1.217497e-03	k: 1232	n:1070000
Cons ci ratio: 7.825135e-04	ci left: 9.587296e-01	ci right 9.594810e-01	k: 1026244	n:1070000
KS ci ratio: 2.083111e-01	ci left: 2.963896e-04	ci right 3.661750e-04	k: 353	n:1070000
CPAMD8   1070000 perm   704 sec   (1520 perm/sec)   p_kst 3.299065e-04   p_cons 9.591065e-01   p_joint 1.151402e-03

Joint ci ratio: 1.108545e-01	ci left: 1.092360e-03	ci right 1.221450e-03	k: 1248	n:1080000
Cons ci ratio: 7.790207e-04	ci left: 9.587173e-01	ci right 9.594654e-01	k: 1035820	n:1080000
KS ci ratio: 2.059960e-01	ci left: 3.006685e-04	ci right 3.705755e-04	k: 361	n:1080000
CPAMD8   1080000 perm   714 sec   (1512 perm/sec)   p_kst 3.342593e-04   p_cons 9.590926e-01   p_joint 1.155556e-03

Joint ci ratio: 1.108996e-01	ci left: 1.081446e-03	ci right 1.209302e-03	k: 1247	n:1090000
Cons ci ratio: 7.760092e-04	ci left: 9.586611e-01	ci right 9.594062e-01	k: 1045348	n:1090000
KS ci ratio: 2.045878e-01	ci left: 3.022615e-04	ci right 3.719983e-04	k: 366	n:1090000
CPAMD8   1090000 perm   725 sec   (1504 perm/sec)   p_kst 3.357798e-04   p_cons 9.590349e-01   p_joint 1.144037e-03

Joint ci ratio: 1.105020e-01	ci left: 1.079570e-03	ci right 1.206716e-03	k: 1256	n:1100000
Cons ci ratio: 7.723607e-04	ci left: 9.586743e-01	ci right 9.594160e-01	k: 1054951	n:1100000
KS ci ratio: 2.032081e-01	ci left: 3.038271e-04	ci right 3.733937e-04	k: 371	n:1100000
CPAMD8   1100000 perm   735 sec   (1496 perm/sec)   p_kst 3.372727e-04   p_cons 9.590464e-01   p_joint 1.141818e-03

Joint ci ratio: 1.096758e-01	ci left: 1.086490e-03	ci right 1.213433e-03	k: 1275	n:1110000
Cons ci ratio: 7.690629e-04	ci left: 9.586566e-01	ci right 9.593950e-01	k: 1064520	n:1110000
KS ci ratio: 2.023936e-01	ci left: 3.036553e-04	ci right 3.728695e-04	k: 374	n:1110000
CPAMD8   1110000 perm   746 sec   (1488 perm/sec)   p_kst 3.369369e-04   p_cons 9.590270e-01   p_joint 1.148649e-03

Joint ci ratio: 1.091637e-01	ci left: 1.087211e-03	ci right 1.213606e-03	k: 1287	n:1120000
Cons ci ratio: 7.656503e-04	ci left: 9.586553e-01	ci right 9.593905e-01	k: 1074107	n:1120000
KS ci ratio: 2.018562e-01	ci left: 3.026394e-04	ci right 3.714163e-04	k: 376	n:1120000
CPAMD8   1120000 perm   756 sec   (1481 perm/sec)   p_kst 3.357143e-04   p_cons 9.590241e-01   p_joint 1.149107e-03

Joint ci ratio: 1.086168e-01	ci left: 1.088780e-03	ci right 1.214684e-03	k: 1300	n:1130000
Cons ci ratio: 7.622140e-04	ci left: 9.586612e-01	ci right 9.593931e-01	k: 1083702	n:1130000
KS ci ratio: 2.013230e-01	ci left: 3.016418e-04	ci right 3.699886e-04	k: 378	n:1130000
CPAMD8   1130000 perm   767 sec   (1473 perm/sec)   p_kst 3.345133e-04   p_cons 9.590283e-01   p_joint 1.150442e-03

Joint ci ratio: 1.086592e-01	ci left: 1.078376e-03	ci right 1.203128e-03	k: 1299	n:1140000
Cons ci ratio: 7.588660e-04	ci left: 9.586626e-01	ci right 9.593912e-01	k: 1093292	n:1140000
KS ci ratio: 2.007940e-01	ci left: 3.006618e-04	ci right 3.685857e-04	k: 380	n:1140000
CPAMD8   1140000 perm   778 sec   (1465 perm/sec)   p_kst 3.333333e-04   p_cons 9.590281e-01   p_joint 1.139474e-03

Joint ci ratio: 1.079964e-01	ci left: 1.082535e-03	ci right 1.206956e-03	k: 1315	n:1150000
Cons ci ratio: 7.559712e-04	ci left: 9.586212e-01	ci right 9.593470e-01	k: 1102833	n:1150000
KS ci ratio: 2.002692e-01	ci left: 2.996992e-04	ci right 3.672070e-04	k: 382	n:1150000
CPAMD8   1150000 perm   789 sec   (1457 perm/sec)   p_kst 3.321739e-04   p_cons 9.589852e-01   p_joint 1.143478e-03

Joint ci ratio: 1.085350e-01	ci left: 1.062299e-03	ci right 1.185042e-03	k: 1302	n:1160000
Cons ci ratio: 7.527538e-04	ci left: 9.586177e-01	ci right 9.593404e-01	k: 1112417	n:1160000
KS ci ratio: 1.997485e-01	ci left: 2.987534e-04	ci right 3.658518e-04	k: 384	n:1160000
CPAMD8   1160000 perm   801 sec   (1449 perm/sec)   p_kst 3.310345e-04   p_cons 9.589802e-01   p_joint 1.122414e-03

Joint ci ratio: 1.090816e-01	ci left: 1.042410e-03	ci right 1.163500e-03	k: 1289	n:1170000
Cons ci ratio: 7.494469e-04	ci left: 9.586280e-01	ci right 9.593475e-01	k: 1122017	n:1170000
KS ci ratio: 1.989748e-01	ci left: 2.986360e-04	ci right 3.654168e-04	k: 387	n:1170000
CPAMD8   1170000 perm   812 sec   (1441 perm/sec)   p_kst 3.307692e-04   p_cons 9.589889e-01   p_joint 1.101709e-03

Joint ci ratio: 1.092518e-01	ci left: 1.030278e-03	ci right 1.150158e-03	k: 1285	n:1180000
Cons ci ratio: 7.459902e-04	ci left: 9.586585e-01	ci right 9.593748e-01	k: 1131641	n:1180000
KS ci ratio: 1.989750e-01	ci left: 2.961052e-04	ci right 3.623201e-04	k: 387	n:1180000
CPAMD8   1180000 perm   823 sec   (1433 perm/sec)   p_kst 3.279661e-04   p_cons 9.590178e-01   p_joint 1.088983e-03

Joint ci ratio: 1.092949e-01	ci left: 1.020803e-03	ci right 1.139630e-03	k: 1284	n:1190000
Cons ci ratio: 7.428426e-04	ci left: 9.586608e-01	ci right 9.593740e-01	k: 1141232	n:1190000
KS ci ratio: 1.979572e-01	ci left: 2.968112e-04	ci right 3.628035e-04	k: 391	n:1190000
CPAMD8   1190000 perm   835 sec   (1425 perm/sec)   p_kst 3.285714e-04   p_cons 9.590185e-01   p_joint 1.078992e-03

Joint ci ratio: 1.089985e-01	ci left: 1.017970e-03	ci right 1.136126e-03	k: 1291	n:1200000
Cons ci ratio: 7.396169e-04	ci left: 9.586755e-01	ci right 9.593856e-01	k: 1150838	n:1200000
KS ci ratio: 1.969548e-01	ci left: 2.975063e-04	ci right 3.632781e-04	k: 395	n:1200000
CPAMD8   1200000 perm   846 sec   (1418 perm/sec)   p_kst 3.291667e-04   p_cons 9.590317e-01   p_joint 1.075833e-03

Joint ci ratio: 1.105958e-01	ci left: 9.798174e-04	ci right 1.095320e-03	k: 1254	n:1210000
Cons ci ratio: 7.364869e-04	ci left: 9.586842e-01	ci right 9.593913e-01	k: 1160437	n:1210000
KS ci ratio: 1.969551e-01	ci left: 2.950476e-04	ci right 3.602758e-04	k: 395	n:1210000
CPAMD8   1210000 perm   858 sec   (1410 perm/sec)   p_kst 3.264463e-04   p_cons 9.590388e-01   p_joint 1.036364e-03

Joint ci ratio: 1.103764e-01	ci left: 9.757711e-04	ci right 1.090553e-03	k: 1259	n:1220000
Cons ci ratio: 7.336106e-04	ci left: 9.586697e-01	ci right 9.593740e-01	k: 1170008	n:1220000
KS ci ratio: 1.952368e-01	ci left: 2.980852e-04	ci right 3.633417e-04	k: 402	n:1220000
CPAMD8   1220000 perm   870 sec   (1402 perm/sec)   p_kst 3.295082e-04   p_cons 9.590230e-01   p_joint 1.031967e-03

Joint ci ratio: 1.098977e-01	ci left: 9.765347e-04	ci right 1.090876e-03	k: 1270	n:1230000
Cons ci ratio: 7.304351e-04	ci left: 9.586914e-01	ci right 9.593927e-01	k: 1179623	n:1230000
KS ci ratio: 1.945141e-01	ci left: 2.979818e-04	ci right 3.629456e-04	k: 405	n:1230000
CPAMD8   1230000 perm   882 sec   (1395 perm/sec)   p_kst 3.292683e-04   p_cons 9.590431e-01   p_joint 1.032520e-03

Joint ci ratio: 1.095107e-01	ci left: 9.757183e-04	ci right 1.089536e-03	k: 1279	n:1240000
Cons ci ratio: 7.274796e-04	ci left: 9.586932e-01	ci right 9.593917e-01	k: 1189214	n:1240000
KS ci ratio: 1.935629e-01	ci left: 2.986478e-04	ci right 3.634010e-04	k: 409	n:1240000
CPAMD8   1240000 perm   893 sec   (1388 perm/sec)   p_kst 3.298387e-04   p_cons 9.590435e-01   p_joint 1.031452e-03

Joint ci ratio: 1.091278e-01	ci left: 9.749157e-04	ci right 1.088217e-03	k: 1288	n:1250000
Cons ci ratio: 7.247662e-04	ci left: 9.586726e-01	ci right 9.593685e-01	k: 1198777	n:1250000
KS ci ratio: 1.935632e-01	ci left: 2.962586e-04	ci right 3.604938e-04	k: 409	n:1250000
CPAMD8   1250000 perm   905 sec   (1381 perm/sec)   p_kst 3.272000e-04   p_cons 9.590216e-01   p_joint 1.030400e-03

Joint ci ratio: 1.087489e-01	ci left: 9.741265e-04	ci right 1.086917e-03	k: 1297	n:1260000
Cons ci ratio: 7.217182e-04	ci left: 9.586922e-01	ci right 9.593851e-01	k: 1208390	n:1260000
KS ci ratio: 1.933277e-01	ci left: 2.946625e-04	ci right 3.584648e-04	k: 410	n:1260000
CPAMD8   1260000 perm   917 sec   (1374 perm/sec)   p_kst 3.253968e-04   p_cons 9.590397e-01   p_joint 1.029365e-03

Joint ci ratio: 1.084986e-01	ci left: 9.710522e-04	ci right 1.083212e-03	k: 1303	n:1270000
Cons ci ratio: 7.188956e-04	ci left: 9.586909e-01	ci right 9.593811e-01	k: 1217977	n:1270000
KS ci ratio: 1.921623e-01	ci left: 2.960894e-04	ci right 3.597690e-04	k: 415	n:1270000
CPAMD8   1270000 perm   929 sec   (1367 perm/sec)   p_kst 3.267717e-04   p_cons 9.590370e-01   p_joint 1.025984e-03

Joint ci ratio: 1.079616e-01	ci left: 9.733472e-04	ci right 1.085180e-03	k: 1316	n:1280000
Cons ci ratio: 7.160204e-04	ci left: 9.586990e-01	ci right 9.593864e-01	k: 1227576	n:1280000
KS ci ratio: 1.905654e-01	ci left: 2.989830e-04	ci right 3.626887e-04	k: 422	n:1280000
CPAMD8   1280000 perm   941 sec   (1361 perm/sec)   p_kst 3.296875e-04   p_cons 9.590437e-01   p_joint 1.028125e-03

Joint ci ratio: 1.078392e-01	ci left: 9.680646e-04	ci right 1.079157e-03	k: 1319	n:1290000
Cons ci ratio: 7.131865e-04	ci left: 9.587062e-01	ci right 9.593910e-01	k: 1237174	n:1290000
KS ci ratio: 1.905656e-01	ci left: 2.966653e-04	ci right 3.598772e-04	k: 422	n:1290000
CPAMD8   1290000 perm   953 sec   (1353 perm/sec)   p_kst 3.271318e-04   p_cons 9.590496e-01   p_joint 1.022481e-03

Joint ci ratio: 1.077172e-01	ci left: 9.628633e-04	ci right 1.073225e-03	k: 1322	n:1300000
Cons ci ratio: 7.107129e-04	ci left: 9.586770e-01	ci right 9.593594e-01	k: 1246725	n:1300000
KS ci ratio: 1.896709e-01	ci left: 2.973137e-04	ci right 3.603321e-04	k: 426	n:1300000
CPAMD8   1300000 perm   965 sec   (1347 perm/sec)   p_kst 3.276923e-04   p_cons 9.590192e-01   p_joint 1.016923e-03

Joint ci ratio: 1.073124e-01	ci left: 9.629415e-04	ci right 1.072872e-03	k: 1332	n:1310000
Cons ci ratio: 7.080444e-04	ci left: 9.586728e-01	ci right 9.593526e-01	k: 1256308	n:1310000
KS ci ratio: 1.892283e-01	ci left: 2.964985e-04	ci right 3.591805e-04	k: 428	n:1310000
CPAMD8   1310000 perm   978 sec   (1340 perm/sec)   p_kst 3.267176e-04   p_cons 9.590137e-01   p_joint 1.016794e-03

Joint ci ratio: 1.066343e-01	ci left: 9.681808e-04	ci right 1.077967e-03	k: 1349	n:1320000
Cons ci ratio: 7.054874e-04	ci left: 9.586596e-01	ci right 9.593369e-01	k: 1265879	n:1320000
KS ci ratio: 1.881350e-01	ci left: 2.978612e-04	ci right 3.604260e-04	k: 433	n:1320000
CPAMD8   1320000 perm   990 sec   (1333 perm/sec)   p_kst 3.280303e-04   p_cons 9.589992e-01   p_joint 1.021970e-03

Joint ci ratio: 1.062415e-01	ci left: 9.682199e-04	ci right 1.077581e-03	k: 1359	n:1330000
Cons ci ratio: 7.027562e-04	ci left: 9.586692e-01	ci right 9.593439e-01	k: 1275480	n:1330000
KS ci ratio: 1.877031e-01	ci left: 2.970547e-04	ci right 3.592905e-04	k: 435	n:1330000
CPAMD8   1330000 perm   1003 sec   (1326 perm/sec)   p_kst 3.270677e-04   p_cons 9.590075e-01   p_joint 1.021805e-03

Joint ci ratio: 1.064773e-01	ci left: 9.566356e-04	ci right 1.064943e-03	k: 1353	n:1340000
Cons ci ratio: 7.001228e-04	ci left: 9.586711e-01	ci right 9.593433e-01	k: 1285071	n:1340000
KS ci ratio: 1.870607e-01	ci left: 2.969716e-04	ci right 3.589529e-04	k: 438	n:1340000
CPAMD8   1340000 perm   1015 sec   (1320 perm/sec)   p_kst 3.268657e-04   p_cons 9.590082e-01   p_joint 1.009701e-03

Joint ci ratio: 1.061642e-01	ci left: 9.553177e-04	ci right 1.063138e-03	k: 1361	n:1350000
Cons ci ratio: 6.975978e-04	ci left: 9.586642e-01	ci right 9.593339e-01	k: 1294650	n:1350000
KS ci ratio: 1.862142e-01	ci left: 2.975964e-04	ci right 3.593952e-04	k: 442	n:1350000
CPAMD8   1350000 perm   1028 sec   (1314 perm/sec)   p_kst 3.274074e-04   p_cons 9.590000e-01   p_joint 1.008148e-03

Joint ci ratio: 1.058926e-01	ci left: 9.533038e-04	ci right 1.060604e-03	k: 1368	n:1360000
Cons ci ratio: 6.948788e-04	ci left: 9.586824e-01	ci right 9.593495e-01	k: 1304263	n:1360000
KS ci ratio: 1.853791e-01	ci left: 2.982126e-04	ci right 3.598304e-04	k: 446	n:1360000
CPAMD8   1360000 perm   1040 sec   (1307 perm/sec)   p_kst 3.279412e-04   p_cons 9.590169e-01   p_joint 1.005882e-03

Joint ci ratio: 9.736564e-02	ci left: 1.124202e-03	ci right 1.239967e-03	k: 1618	n:1370000
Cons ci ratio: 6.924613e-04	ci left: 9.586696e-01	ci right 9.593343e-01	k: 1313834	n:1370000
KS ci ratio: 1.843508e-01	ci left: 2.995166e-04	ci right 3.610222e-04	k: 451	n:1370000
CPAMD8   1370000 perm   1053 sec   (1301 perm/sec)   p_kst 3.291971e-04   p_cons 9.590029e-01   p_joint 1.181022e-03

Joint ci ratio: 9.688791e-02	ci left: 1.127368e-03	ci right 1.242858e-03	k: 1634	n:1380000
Cons ci ratio: 6.900624e-04	ci left: 9.586577e-01	ci right 9.593201e-01	k: 1323406	n:1380000
KS ci ratio: 1.835404e-01	ci left: 3.001113e-04	ci right 3.614380e-04	k: 455	n:1380000
CPAMD8   1380000 perm   1066 sec   (1295 perm/sec)   p_kst 3.297101e-04   p_cons 9.589899e-01   p_joint 1.184058e-03

Joint ci ratio: 9.682905e-02	ci left: 1.120661e-03	ci right 1.235390e-03	k: 1636	n:1390000
Cons ci ratio: 6.875687e-04	ci left: 9.586597e-01	ci right 9.593197e-01	k: 1332997	n:1390000
KS ci ratio: 1.833397e-01	ci left: 2.986386e-04	ci right 3.595902e-04	k: 456	n:1390000
CPAMD8   1390000 perm   1079 sec   (1289 perm/sec)   p_kst 3.280576e-04   p_cons 9.589906e-01   p_joint 1.176978e-03

Joint ci ratio: 9.644681e-02	ci left: 1.121718e-03	ci right 1.236076e-03	k: 1649	n:1400000
Cons ci ratio: 6.851828e-04	ci left: 9.586523e-01	ci right 9.593101e-01	k: 1342575	n:1400000
KS ci ratio: 1.821477e-01	ci left: 3.005952e-04	ci right 3.615032e-04	k: 462	n:1400000
CPAMD8   1400000 perm   1092 sec   (1282 perm/sec)   p_kst 3.300000e-04   p_cons 9.589821e-01   p_joint 1.177857e-03

Joint ci ratio: 9.703780e-02	ci left: 1.099921e-03	ci right 1.212783e-03	k: 1629	n:1410000
Cons ci ratio: 6.825814e-04	ci left: 9.586728e-01	ci right 9.593281e-01	k: 1352192	n:1410000
KS ci ratio: 1.815604e-01	ci left: 3.004941e-04	ci right 3.611637e-04	k: 465	n:1410000
CPAMD8   1410000 perm   1105 sec   (1276 perm/sec)   p_kst 3.297872e-04   p_cons 9.590014e-01   p_joint 1.155319e-03

Joint ci ratio: 9.742793e-02	ci left: 1.083242e-03	ci right 1.194865e-03	k: 1616	n:1420000
Cons ci ratio: 6.800641e-04	ci left: 9.586867e-01	ci right 9.593396e-01	k: 1361800	n:1420000
KS ci ratio: 1.813661e-01	ci left: 2.990501e-04	ci right 3.593565e-04	k: 466	n:1420000
CPAMD8   1420000 perm   1118 sec   (1270 perm/sec)   p_kst 3.281690e-04   p_cons 9.590141e-01   p_joint 1.138028e-03

Joint ci ratio: 9.694931e-02	ci left: 1.086584e-03	ci right 1.197970e-03	k: 1632	n:1430000
Cons ci ratio: 6.775864e-04	ci left: 9.586990e-01	ci right 9.593495e-01	k: 1371406	n:1430000
KS ci ratio: 1.804028e-01	ci left: 3.002971e-04	ci right 3.604982e-04	k: 471	n:1430000
CPAMD8   1430000 perm   1131 sec   (1264 perm/sec)   p_kst 3.293706e-04   p_cons 9.590252e-01   p_joint 1.141259e-03

Joint ci ratio: 9.671282e-02	ci left: 1.084459e-03	ci right 1.195341e-03	k: 1640	n:1440000
Cons ci ratio: 6.753981e-04	ci left: 9.586804e-01	ci right 9.593288e-01	k: 1380968	n:1440000
KS ci ratio: 1.798322e-01	ci left: 3.002011e-04	ci right 3.601719e-04	k: 474	n:1440000
CPAMD8   1440000 perm   1145 sec   (1258 perm/sec)   p_kst 3.291667e-04   p_cons 9.590056e-01   p_joint 1.138889e-03

Joint ci ratio: 9.641953e-02	ci left: 1.083710e-03	ci right 1.194160e-03	k: 1650	n:1450000
Cons ci ratio: 6.732897e-04	ci left: 9.586552e-01	ci right 9.593016e-01	k: 1390520	n:1450000
KS ci ratio: 1.794549e-01	ci left: 2.994480e-04	ci right 3.591292e-04	k: 476	n:1450000
CPAMD8   1450000 perm   1158 sec   (1252 perm/sec)   p_kst 3.282759e-04   p_cons 9.589793e-01   p_joint 1.137931e-03

Joint ci ratio: 9.727900e-02	ci left: 1.056905e-03	ci right 1.165638e-03	k: 1621	n:1460000
Cons ci ratio: 6.710079e-04	ci left: 9.586530e-01	ci right 9.592972e-01	k: 1400105	n:1460000
KS ci ratio: 1.785216e-01	ci left: 3.006683e-04	ci right 3.602473e-04	k: 481	n:1460000
CPAMD8   1460000 perm   1172 sec   (1246 perm/sec)   p_kst 3.294521e-04   p_cons 9.589760e-01   p_joint 1.110274e-03

Joint ci ratio: 9.718944e-02	ci left: 1.051706e-03	ci right 1.159799e-03	k: 1624	n:1470000
Cons ci ratio: 6.687203e-04	ci left: 9.586543e-01	ci right 9.592963e-01	k: 1409695	n:1470000
KS ci ratio: 1.779686e-01	ci left: 3.005727e-04	ci right 3.599284e-04	k: 484	n:1470000
CPAMD8   1470000 perm   1185 sec   (1240 perm/sec)   p_kst 3.292517e-04   p_cons 9.589762e-01   p_joint 1.104762e-03

Joint ci ratio: 9.701067e-02	ci left: 1.048555e-03	ci right 1.156115e-03	k: 1630	n:1480000
Cons ci ratio: 6.665703e-04	ci left: 9.586420e-01	ci right 9.592819e-01	k: 1419265	n:1480000
KS ci ratio: 1.776029e-01	ci left: 2.998330e-04	ci right 3.589079e-04	k: 486	n:1480000
CPAMD8   1480000 perm   1199 sec   (1234 perm/sec)   p_kst 3.283784e-04   p_cons 9.589628e-01   p_joint 1.101351e-03

Joint ci ratio: 9.674418e-02	ci left: 1.047412e-03	ci right 1.154543e-03	k: 1639	n:1490000
Cons ci ratio: 6.641406e-04	ci left: 9.586656e-01	ci right 9.593031e-01	k: 1428888	n:1490000
KS ci ratio: 1.772394e-01	ci left: 2.991033e-04	ci right 3.579010e-04	k: 488	n:1490000
CPAMD8   1490000 perm   1213 sec   (1228 perm/sec)   p_kst 3.275168e-04   p_cons 9.589852e-01   p_joint 1.100000e-03

Joint ci ratio: 9.627552e-02	ci left: 1.050838e-03	ci right 1.157770e-03	k: 1655	n:1500000
Cons ci ratio: 6.619559e-04	ci left: 9.586627e-01	ci right 9.592982e-01	k: 1438472	n:1500000
KS ci ratio: 1.765188e-01	ci left: 2.996579e-04	ci right 3.582996e-04	k: 492	n:1500000
CPAMD8   1500000 perm   1226 sec   (1223 perm/sec)   p_kst 3.280000e-04   p_cons 9.589813e-01   p_joint 1.103333e-03

Joint ci ratio: 9.607282e-02	ci left: 1.048403e-03	ci right 1.154849e-03	k: 1662	n:1510000
Cons ci ratio: 6.597760e-04	ci left: 9.586619e-01	ci right 9.592953e-01	k: 1448059	n:1510000
KS ci ratio: 1.763402e-01	ci left: 2.983064e-04	ci right 3.566182e-04	k: 493	n:1510000
CPAMD8   1510000 perm   1240 sec   (1217 perm/sec)   p_kst 3.264901e-04   p_cons 9.589795e-01   p_joint 1.100662e-03

Joint ci ratio: 9.610209e-02	ci left: 1.040864e-03	ci right 1.146578e-03	k: 1661	n:1520000
Cons ci ratio: 6.575734e-04	ci left: 9.586664e-01	ci right 9.592976e-01	k: 1457654	n:1520000
KS ci ratio: 1.756306e-01	ci left: 2.988595e-04	ci right 3.570194e-04	k: 497	n:1520000
CPAMD8   1520000 perm   1254 sec   (1212 perm/sec)   p_kst 3.269737e-04   p_cons 9.589829e-01   p_joint 1.092763e-03

Joint ci ratio: 9.581431e-02	ci left: 1.040440e-03	ci right 1.145777e-03	k: 1671	n:1530000
Cons ci ratio: 6.556269e-04	ci left: 9.586426e-01	ci right 9.592720e-01	k: 1467206	n:1530000
KS ci ratio: 1.752790e-01	ci left: 2.981560e-04	ci right 3.560505e-04	k: 499	n:1530000
CPAMD8   1530000 perm   1268 sec   (1206 perm/sec)   p_kst 3.261438e-04   p_cons 9.589582e-01   p_joint 1.092157e-03

Joint ci ratio: 9.692356e-02	ci left: 1.009602e-03	ci right 1.113068e-03	k: 1633	n:1540000
Cons ci ratio: 6.535248e-04	ci left: 9.586400e-01	ci right 9.592673e-01	k: 1476790	n:1540000
KS ci ratio: 1.752792e-01	ci left: 2.962199e-04	ci right 3.537385e-04	k: 499	n:1540000
CPAMD8   1540000 perm   1282 sec   (1201 perm/sec)   p_kst 3.240260e-04   p_cons 9.589545e-01   p_joint 1.060390e-03

Joint ci ratio: 9.695360e-02	ci left: 1.002459e-03	ci right 1.105226e-03	k: 1632	n:1550000
Cons ci ratio: 6.512400e-04	ci left: 9.586620e-01	ci right 9.592872e-01	k: 1486412	n:1550000
KS ci ratio: 1.747557e-01	ci left: 2.961595e-04	ci right 3.534765e-04	k: 502	n:1550000
CPAMD8   1550000 perm   1296 sec   (1196 perm/sec)   p_kst 3.238710e-04   p_cons 9.589755e-01   p_joint 1.052903e-03

Joint ci ratio: 9.659928e-02	ci left: 1.003539e-03	ci right 1.106020e-03	k: 1644	n:1560000
Cons ci ratio: 6.492432e-04	ci left: 9.586516e-01	ci right 9.592749e-01	k: 1495984	n:1560000
KS ci ratio: 1.740650e-01	ci left: 2.967132e-04	ci right 3.538866e-04	k: 506	n:1560000
CPAMD8   1560000 perm   1310 sec   (1191 perm/sec)   p_kst 3.243590e-04   p_cons 9.589641e-01   p_joint 1.053846e-03

Joint ci ratio: 9.633615e-02	ci left: 1.002741e-03	ci right 1.104846e-03	k: 1653	n:1570000
Cons ci ratio: 6.472960e-04	ci left: 9.586375e-01	ci right 9.592589e-01	k: 1505550	n:1570000
KS ci ratio: 1.735523e-01	ci left: 2.966510e-04	ci right 3.536264e-04	k: 509	n:1570000
CPAMD8   1570000 perm   1324 sec   (1185 perm/sec)   p_kst 3.242038e-04   p_cons 9.589490e-01   p_joint 1.052866e-03

Joint ci ratio: 9.590213e-02	ci left: 1.005660e-03	ci right 1.107575e-03	k: 1668	n:1580000
Cons ci ratio: 6.452054e-04	ci left: 9.586433e-01	ci right 9.592626e-01	k: 1515147	n:1580000
KS ci ratio: 1.725401e-01	ci left: 2.984065e-04	ci right 3.553500e-04	k: 515	n:1580000
CPAMD8   1580000 perm   1338 sec   (1180 perm/sec)   p_kst 3.259494e-04   p_cons 9.589538e-01   p_joint 1.055696e-03

Joint ci ratio: 9.578761e-02	ci left: 1.001791e-03	ci right 1.103185e-03	k: 1672	n:1590000
Cons ci ratio: 6.432376e-04	ci left: 9.586364e-01	ci right 9.592538e-01	k: 1524724	n:1590000
KS ci ratio: 1.720408e-01	ci left: 2.983352e-04	ci right 3.550832e-04	k: 518	n:1590000
CPAMD8   1590000 perm   1353 sec   (1176 perm/sec)   p_kst 3.257862e-04   p_cons 9.589459e-01   p_joint 1.051572e-03

Joint ci ratio: 9.680696e-02	ci left: 9.741807e-04	ci right 1.073890e-03	k: 1637	n:1600000
Cons ci ratio: 6.413335e-04	ci left: 9.586239e-01	ci right 9.592395e-01	k: 1534292	n:1600000
KS ci ratio: 1.710547e-01	ci left: 3.000596e-04	ci right 3.567747e-04	k: 524	n:1600000
CPAMD8   1600000 perm   1367 sec   (1171 perm/sec)   p_kst 3.275000e-04   p_cons 9.589325e-01   p_joint 1.023125e-03

Joint ci ratio: 9.695551e-02	ci left: 9.650994e-04	ci right 1.064039e-03	k: 1632	n:1610000
Cons ci ratio: 6.393655e-04	ci left: 9.586215e-01	ci right 9.592352e-01	k: 1543876	n:1610000
KS ci ratio: 1.708921e-01	ci left: 2.987904e-04	ci right 3.552064e-04	k: 525	n:1610000
CPAMD8   1610000 perm   1381 sec   (1166 perm/sec)   p_kst 3.260870e-04   p_cons 9.589292e-01   p_joint 1.013665e-03

Joint ci ratio: 9.660117e-02	ci left: 9.663701e-04	ci right 1.065057e-03	k: 1644	n:1620000
Cons ci ratio: 6.373856e-04	ci left: 9.586229e-01	ci right 9.592347e-01	k: 1553466	n:1620000
KS ci ratio: 1.699256e-01	ci left: 3.004918e-04	ci right 3.568753e-04	k: 531	n:1620000
CPAMD8   1620000 perm   1395 sec   (1161 perm/sec)   p_kst 3.277778e-04   p_cons 9.589296e-01   p_joint 1.014815e-03

Joint ci ratio: 9.636719e-02	ci left: 9.652310e-04	ci right 1.063550e-03	k: 1652	n:1630000
Cons ci ratio: 6.354338e-04	ci left: 9.586231e-01	ci right 9.592330e-01	k: 1563054	n:1630000
KS ci ratio: 1.694485e-01	ci left: 3.004106e-04	ci right 3.566045e-04	k: 534	n:1630000
CPAMD8   1630000 perm   1410 sec   (1156 perm/sec)   p_kst 3.276074e-04   p_cons 9.589288e-01   p_joint 1.013497e-03

Joint ci ratio: 9.680817e-02	ci left: 9.504197e-04	ci right 1.047698e-03	k: 1637	n:1640000
Cons ci ratio: 6.333870e-04	ci left: 9.586373e-01	ci right 9.592453e-01	k: 1572665	n:1640000
KS ci ratio: 1.686621e-01	ci left: 3.014986e-04	ci right 3.576077e-04	k: 539	n:1640000
CPAMD8   1640000 perm   1425 sec   (1151 perm/sec)   p_kst 3.286585e-04   p_cons 9.589421e-01   p_joint 9.981707e-04

Joint ci ratio: 9.657268e-02	ci left: 9.493908e-04	ci right 1.046314e-03	k: 1645	n:1650000
Cons ci ratio: 6.316320e-04	ci left: 9.586173e-01	ci right 9.592235e-01	k: 1582220	n:1650000
KS ci ratio: 1.680409e-01	ci left: 3.019935e-04	ci right 3.579666e-04	k: 543	n:1650000
CPAMD8   1650000 perm   1439 sec   (1147 perm/sec)   p_kst 3.290909e-04   p_cons 9.589212e-01   p_joint 9.969697e-04

Joint ci ratio: 9.633891e-02	ci left: 9.483746e-04	ci right 1.044946e-03	k: 1653	n:1660000
Cons ci ratio: 6.295880e-04	ci left: 9.586356e-01	ci right 9.592399e-01	k: 1591838	n:1660000
KS ci ratio: 1.678867e-01	ci left: 3.007513e-04	ci right 3.564379e-04	k: 544	n:1660000
CPAMD8   1660000 perm   1454 sec   (1142 perm/sec)   p_kst 3.277108e-04   p_cons 9.589386e-01   p_joint 9.957831e-04

Joint ci ratio: 9.654391e-02	ci left: 9.386049e-04	ci right 1.034397e-03	k: 1646	n:1670000
Cons ci ratio: 6.276160e-04	ci left: 9.586471e-01	ci right 9.592495e-01	k: 1601445	n:1670000
KS ci ratio: 1.671218e-01	ci left: 3.018189e-04	ci right 3.574230e-04	k: 549	n:1670000
CPAMD8   1670000 perm   1469 sec   (1137 perm/sec)   p_kst 3.287425e-04   p_cons 9.589491e-01   p_joint 9.856287e-04

Joint ci ratio: 9.734619e-02	ci left: 9.173357e-04	ci right 1.011779e-03	k: 1619	n:1680000
Cons ci ratio: 6.257666e-04	ci left: 9.586453e-01	ci right 9.592460e-01	k: 1611030	n:1680000
KS ci ratio: 1.660681e-01	ci left: 3.040153e-04	ci right 3.596356e-04	k: 556	n:1680000
CPAMD8   1680000 perm   1484 sec   (1132 perm/sec)   p_kst 3.309524e-04   p_cons 9.589464e-01   p_joint 9.636905e-04

Joint ci ratio: 9.813793e-02	ci left: 8.968987e-04	ci right 9.900323e-04	k: 1593	n:1690000
Cons ci ratio: 6.061187e-04	ci left: 9.608727e-01	ci right 9.614559e-01	k: 1624369	n:1690000
KS ci ratio: 1.656227e-01	ci left: 3.039179e-04	ci right 3.593564e-04	k: 559	n:1690000
CPAMD8   1690000 perm   1499 sec   (1128 perm/sec)   p_kst 3.307692e-04   p_cons 9.611651e-01   p_joint 9.426036e-04

Joint ci ratio: 9.910754e-02	ci left: 8.738368e-04	ci right 9.655242e-04	k: 1562	n:1700000
Cons ci ratio: 6.042459e-04	ci left: 9.608844e-01	ci right 9.614658e-01	k: 1633999	n:1700000
KS ci ratio: 1.648882e-01	ci left: 3.049497e-04	ci right 3.603052e-04	k: 564	n:1700000
CPAMD8   1700000 perm   1514 sec   (1123 perm/sec)   p_kst 3.317647e-04   p_cons 9.611759e-01   p_joint 9.188235e-04

Joint ci ratio: 9.958726e-02	ci left: 8.601723e-04	ci right 9.508884e-04	k: 1547	n:1710000
Cons ci ratio: 6.025320e-04	ci left: 9.608784e-01	ci right 9.614581e-01	k: 1643599	n:1710000
KS ci ratio: 1.648883e-01	ci left: 3.031664e-04	ci right 3.581982e-04	k: 564	n:1710000
CPAMD8   1710000 perm   1529 sec   (1118 perm/sec)   p_kst 3.298246e-04   p_cons 9.611690e-01   p_joint 9.046784e-04

Joint ci ratio: 9.939491e-02	ci left: 8.585728e-04	ci right 9.489352e-04	k: 1553	n:1720000
Cons ci ratio: 6.008747e-04	ci left: 9.608671e-01	ci right 9.614453e-01	k: 1653190	n:1720000
KS ci ratio: 1.643077e-01	ci left: 3.036336e-04	ci right 3.585369e-04	k: 568	n:1720000
CPAMD8   1720000 perm   1545 sec   (1113 perm/sec)   p_kst 3.302326e-04   p_cons 9.611570e-01   p_joint 9.029070e-04

Joint ci ratio: 9.910833e-02	ci left: 8.586832e-04	ci right 9.487814e-04	k: 1562	n:1730000
Cons ci ratio: 5.990315e-04	ci left: 9.608810e-01	ci right 9.614573e-01	k: 1662824	n:1730000
KS ci ratio: 1.641636e-01	ci left: 3.024327e-04	ci right 3.570663e-04	k: 569	n:1730000
CPAMD8   1730000 perm   1560 sec   (1109 perm/sec)   p_kst 3.289017e-04   p_cons 9.611699e-01   p_joint 9.028902e-04

Joint ci ratio: 9.872997e-02	ci left: 8.604742e-04	ci right 9.503957e-04	k: 1574	n:1740000
Cons ci ratio: 5.974304e-04	ci left: 9.608664e-01	ci right 9.614412e-01	k: 1672409	n:1740000
KS ci ratio: 1.634482e-01	ci left: 3.034504e-04	ci right 3.580054e-04	k: 574	n:1740000
CPAMD8   1740000 perm   1576 sec   (1104 perm/sec)   p_kst 3.298851e-04   p_cons 9.611546e-01   p_joint 9.045977e-04

Joint ci ratio: 9.838694e-02	ci left: 8.616880e-04	ci right 9.514055e-04	k: 1585	n:1750000
Cons ci ratio: 5.957053e-04	ci left: 9.608692e-01	ci right 9.614424e-01	k: 1682024	n:1750000
KS ci ratio: 1.628826e-01	ci left: 3.039088e-04	ci right 3.583386e-04	k: 578	n:1750000
CPAMD8   1750000 perm   1591 sec   (1100 perm/sec)   p_kst 3.302857e-04   p_cons 9.611566e-01   p_joint 9.057143e-04

Joint ci ratio: 9.829419e-02	ci left: 8.584546e-04	ci right 9.477463e-04	k: 1588	n:1760000
Cons ci ratio: 5.939769e-04	ci left: 9.608743e-01	ci right 9.614458e-01	k: 1691643	n:1760000
KS ci ratio: 1.621838e-01	ci left: 3.049074e-04	ci right 3.592589e-04	k: 583	n:1760000
CPAMD8   1760000 perm   1606 sec   (1096 perm/sec)   p_kst 3.312500e-04   p_cons 9.611608e-01   p_joint 9.022727e-04

Joint ci ratio: 9.792504e-02	ci left: 8.602179e-04	ci right 9.493377e-04	k: 1600	n:1770000
Cons ci ratio: 5.923217e-04	ci left: 9.608719e-01	ci right 9.614418e-01	k: 1701249	n:1770000
KS ci ratio: 1.617688e-01	ci left: 3.048109e-04	ci right 3.589928e-04	k: 586	n:1770000
CPAMD8   1770000 perm   1622 sec   (1091 perm/sec)   p_kst 3.310734e-04   p_cons 9.611576e-01   p_joint 9.039548e-04

Joint ci ratio: 9.810947e-02	ci left: 8.520969e-04	ci right 9.405511e-04	k: 1594	n:1780000
Cons ci ratio: 5.906448e-04	ci left: 9.608741e-01	ci right 9.614424e-01	k: 1710863	n:1780000
KS ci ratio: 1.614940e-01	ci left: 3.041767e-04	ci right 3.581450e-04	k: 588	n:1780000
CPAMD8   1780000 perm   1638 sec   (1087 perm/sec)   p_kst 3.303371e-04   p_cons 9.611590e-01   p_joint 8.955056e-04

Joint ci ratio: 9.789494e-02	ci left: 8.511513e-04	ci right 9.393031e-04	k: 1601	n:1790000
Cons ci ratio: 5.889026e-04	ci left: 9.608864e-01	ci right 9.614529e-01	k: 1720495	n:1790000
KS ci ratio: 1.610843e-01	ci left: 3.040857e-04	ci right 3.578878e-04	k: 591	n:1790000
CPAMD8   1790000 perm   1653 sec   (1083 perm/sec)   p_kst 3.301676e-04   p_cons 9.611704e-01   p_joint 8.944134e-04

Joint ci ratio: 9.746983e-02	ci left: 8.540106e-04	ci right 9.420524e-04	k: 1615	n:1800000
Cons ci ratio: 5.873725e-04	ci left: 9.608734e-01	ci right 9.614385e-01	k: 1730082	n:1800000
KS ci ratio: 1.604083e-01	ci left: 3.050624e-04	ci right 3.587889e-04	k: 596	n:1800000
CPAMD8   1800000 perm   1669 sec   (1079 perm/sec)   p_kst 3.311111e-04   p_cons 9.611567e-01   p_joint 8.972222e-04

Joint ci ratio: 9.728947e-02	ci left: 8.525264e-04	ci right 9.402434e-04	k: 1621	n:1810000
Cons ci ratio: 5.858151e-04	ci left: 9.608655e-01	ci right 9.614291e-01	k: 1739678	n:1810000
KS ci ratio: 1.604084e-01	ci left: 3.033769e-04	ci right 3.568067e-04	k: 596	n:1810000
CPAMD8   1810000 perm   1685 sec   (1074 perm/sec)   p_kst 3.292818e-04   p_cons 9.611481e-01   p_joint 8.955801e-04

Joint ci ratio: 9.882619e-02	ci left: 8.210427e-04	ci right 9.069320e-04	k: 1571	n:1820000
Cons ci ratio: 5.840895e-04	ci left: 9.608809e-01	ci right 9.614429e-01	k: 1749316	n:1820000
KS ci ratio: 1.602743e-01	ci left: 3.022374e-04	ci right 3.554177e-04	k: 597	n:1820000
CPAMD8   1820000 perm   1701 sec   (1070 perm/sec)   p_kst 3.280220e-04   p_cons 9.611626e-01   p_joint 8.631868e-04

Joint ci ratio: 9.863820e-02	ci left: 8.197538e-04	ci right 9.053357e-04	k: 1577	n:1830000
Cons ci ratio: 5.825239e-04	ci left: 9.608775e-01	ci right 9.614380e-01	k: 1758920	n:1830000
KS ci ratio: 1.598738e-01	ci left: 3.021595e-04	ci right 3.551805e-04	k: 600	n:1830000
CPAMD8   1830000 perm   1716 sec   (1066 perm/sec)   p_kst 3.278689e-04   p_cons 9.611585e-01   p_joint 8.617486e-04

Joint ci ratio: 9.835810e-02	ci left: 8.200695e-04	ci right 9.054272e-04	k: 1586	n:1840000
Cons ci ratio: 5.809286e-04	ci left: 9.608796e-01	ci right 9.614385e-01	k: 1768534	n:1840000
KS ci ratio: 1.593444e-01	ci left: 3.026044e-04	ci right 3.555108e-04	k: 604	n:1840000
CPAMD8   1840000 perm   1732 sec   (1062 perm/sec)   p_kst 3.282609e-04   p_cons 9.611598e-01   p_joint 8.619565e-04

Joint ci ratio: 9.832733e-02	ci left: 8.161638e-04	ci right 9.010869e-04	k: 1587	n:1850000
Cons ci ratio: 5.793001e-04	ci left: 9.608876e-01	ci right 9.614450e-01	k: 1778159	n:1850000
KS ci ratio: 1.590817e-01	ci left: 3.020067e-04	ci right 3.547132e-04	k: 606	n:1850000
CPAMD8   1850000 perm   1749 sec   (1058 perm/sec)   p_kst 3.275676e-04   p_cons 9.611670e-01   p_joint 8.578378e-04

Joint ci ratio: 9.835855e-02	ci left: 8.112513e-04	ci right 8.956916e-04	k: 1586	n:1860000
Cons ci ratio: 5.777311e-04	ci left: 9.608897e-01	ci right 9.614455e-01	k: 1787773	n:1860000
KS ci ratio: 1.585601e-01	ci left: 3.024481e-04	ci right 3.550421e-04	k: 610	n:1860000
CPAMD8   1860000 perm   1765 sec   (1054 perm/sec)   p_kst 3.279570e-04   p_cons 9.611683e-01   p_joint 8.526882e-04

Joint ci ratio: 9.817321e-02	ci left: 8.100428e-04	ci right 8.941892e-04	k: 1592	n:1870000
Cons ci ratio: 5.761953e-04	ci left: 9.608890e-01	ci right 9.614433e-01	k: 1797382	n:1870000
KS ci ratio: 1.581723e-01	ci left: 3.023714e-04	ci right 3.548113e-04	k: 613	n:1870000
CPAMD8   1870000 perm   1781 sec   (1050 perm/sec)   p_kst 3.278075e-04   p_cons 9.611668e-01   p_joint 8.513369e-04

Joint ci ratio: 9.783594e-02	ci left: 8.114417e-04	ci right 8.954273e-04	k: 1603	n:1880000
Cons ci ratio: 5.746472e-04	ci left: 9.608915e-01	ci right 9.614443e-01	k: 1806997	n:1880000
KS ci ratio: 1.577873e-01	ci left: 3.022957e-04	ci right 3.545828e-04	k: 616	n:1880000
CPAMD8   1880000 perm   1797 sec   (1046 perm/sec)   p_kst 3.276596e-04   p_cons 9.611686e-01   p_joint 8.526596e-04

Joint ci ratio: 9.753235e-02	ci left: 8.123101e-04	ci right 8.961098e-04	k: 1613	n:1890000
Cons ci ratio: 5.731521e-04	ci left: 9.608887e-01	ci right 9.614401e-01	k: 1816602	n:1890000
KS ci ratio: 1.571518e-01	ci left: 3.032376e-04	ci right 3.554563e-04	k: 621	n:1890000
CPAMD8   1890000 perm   1813 sec   (1042 perm/sec)   p_kst 3.285714e-04   p_cons 9.611651e-01   p_joint 8.534392e-04

Joint ci ratio: 8.825052e-02	ci left: 9.915794e-04	ci right 1.083637e-03	k: 1970	n:1900000
Cons ci ratio: 5.717331e-04	ci left: 9.608774e-01	ci right 9.614275e-01	k: 1826191	n:1900000
KS ci ratio: 1.563991e-01	ci left: 3.046756e-04	ci right 3.568672e-04	k: 627	n:1900000
CPAMD8   1900000 perm   1830 sec   (1039 perm/sec)   p_kst 3.300000e-04   p_cons 9.611532e-01   p_joint 1.036842e-03

Joint ci ratio: 8.782801e-02	ci left: 9.961166e-04	ci right 1.088130e-03	k: 1989	n:1910000
Cons ci ratio: 5.703924e-04	ci left: 9.608574e-01	ci right 9.614061e-01	k: 1835763	n:1910000
KS ci ratio: 1.552901e-01	ci left: 3.076088e-04	ci right 3.598944e-04	k: 636	n:1910000
CPAMD8   1910000 perm   1846 sec   (1035 perm/sec)   p_kst 3.329843e-04   p_cons 9.611325e-01   p_joint 1.041361e-03

Joint ci ratio: 8.752061e-02	ci left: 9.980603e-04	ci right 1.089914e-03	k: 2003	n:1920000
Cons ci ratio: 5.688786e-04	ci left: 9.608616e-01	ci right 9.614089e-01	k: 1845381	n:1920000
KS ci ratio: 1.548048e-01	ci left: 3.080092e-04	ci right 3.601840e-04	k: 640	n:1920000
CPAMD8   1920000 perm   1862 sec   (1031 perm/sec)   p_kst 3.333333e-04   p_cons 9.611359e-01   p_joint 1.043229e-03

Joint ci ratio: 8.721641e-02	ci left: 9.999845e-04	ci right 1.091679e-03	k: 2017	n:1930000
Cons ci ratio: 5.674987e-04	ci left: 9.608497e-01	ci right 9.613956e-01	k: 1854968	n:1930000
KS ci ratio: 1.538475e-01	ci left: 3.103983e-04	ci right 3.626228e-04	k: 648	n:1930000
CPAMD8   1930000 perm   1879 sec   (1027 perm/sec)   p_kst 3.357513e-04   p_cons 9.611233e-01   p_joint 1.045078e-03

Joint ci ratio: 8.838623e-02	ci left: 9.681094e-04	ci right 1.058133e-03	k: 1964	n:1940000
Cons ci ratio: 5.660703e-04	ci left: 9.608456e-01	ci right 9.613901e-01	k: 1864570	n:1940000
KS ci ratio: 1.534932e-01	ci left: 3.102852e-04	ci right 3.623594e-04	k: 651	n:1940000
CPAMD8   1940000 perm   1895 sec   (1024 perm/sec)   p_kst 3.355670e-04   p_cons 9.611186e-01   p_joint 1.012371e-03

Joint ci ratio: 8.827411e-02	ci left: 9.656522e-04	ci right 1.055328e-03	k: 1969	n:1950000
Cons ci ratio: 5.646951e-04	ci left: 9.608359e-01	ci right 9.613791e-01	k: 1874161	n:1950000
KS ci ratio: 1.532584e-01	ci left: 3.096803e-04	ci right 3.615661e-04	k: 653	n:1950000
CPAMD8   1950000 perm   1912 sec   (1020 perm/sec)   p_kst 3.348718e-04   p_cons 9.611082e-01   p_joint 1.009744e-03

Joint ci ratio: 8.800644e-02	ci left: 9.667129e-04	ci right 1.056201e-03	k: 1981	n:1960000
Cons ci ratio: 5.631992e-04	ci left: 9.608437e-01	ci right 9.613855e-01	k: 1883786	n:1960000
KS ci ratio: 1.529081e-01	ci left: 3.095723e-04	ci right 3.613106e-04	k: 656	n:1960000
CPAMD8   1960000 perm   1928 sec   (1016 perm/sec)   p_kst 3.346939e-04   p_cons 9.611153e-01   p_joint 1.010714e-03

Joint ci ratio: 8.909318e-02	ci left: 9.379792e-04	ci right 1.025935e-03	k: 1933	n:1970000
Cons ci ratio: 5.616846e-04	ci left: 9.608555e-01	ci right 9.613959e-01	k: 1893419	n:1970000
KS ci ratio: 1.525602e-01	ci left: 3.094655e-04	ci right 3.610575e-04	k: 659	n:1970000
CPAMD8   1970000 perm   1945 sec   (1013 perm/sec)   p_kst 3.345178e-04   p_cons 9.611264e-01   p_joint 9.812183e-04

Joint ci ratio: 8.930163e-02	ci left: 9.287976e-04	ci right 1.016107e-03	k: 1924	n:1980000
Cons ci ratio: 5.602616e-04	ci left: 9.608566e-01	ci right 9.613956e-01	k: 1903031	n:1980000
KS ci ratio: 1.517574e-01	ci left: 3.113033e-04	ci right 3.629038e-04	k: 666	n:1980000
CPAMD8   1980000 perm   1962 sec   (1009 perm/sec)   p_kst 3.363636e-04   p_cons 9.611268e-01   p_joint 9.717172e-04

Joint ci ratio: 8.913976e-02	ci left: 9.275694e-04	ci right 1.014597e-03	k: 1931	n:1990000
Cons ci ratio: 5.587629e-04	ci left: 9.608693e-01	ci right 9.614068e-01	k: 1912666	n:1990000
KS ci ratio: 1.514173e-01	ci left: 3.111893e-04	ci right 3.626449e-04	k: 669	n:1990000
CPAMD8   1990000 perm   1979 sec   (1006 perm/sec)   p_kst 3.361809e-04   p_cons 9.611387e-01   p_joint 9.703518e-04

Joint ci ratio: 8.872721e-02	ci left: 9.317315e-04	ci right 1.018724e-03	k: 1949	n:2000000
Cons ci ratio: 5.573507e-04	ci left: 9.608717e-01	ci right 9.614079e-01	k: 1922281	n:2000000
KS ci ratio: 1.509673e-01	ci left: 3.115577e-04	ci right 3.629072e-04	k: 673	n:2000000
CPAMD8   2000000 perm   1996 sec   (1002 perm/sec)   p_kst 3.365000e-04   p_cons 9.611405e-01   p_joint 9.745000e-04

Joint ci ratio: 8.845541e-02	ci left: 9.329339e-04	ci right 1.019758e-03	k: 1961	n:2010000
Cons ci ratio: 5.559492e-04	ci left: 9.608742e-01	ci right 9.614090e-01	k: 1931896	n:2010000
KS ci ratio: 1.501892e-01	ci left: 3.133591e-04	ci right 3.647154e-04	k: 680	n:2010000
CPAMD8   2010000 perm   2012 sec   (999 perm/sec)   p_kst 3.383085e-04   p_cons 9.611423e-01   p_joint 9.756219e-04

Joint ci ratio: 8.823084e-02	ci left: 9.331566e-04	ci right 1.019770e-03	k: 1971	n:2020000
Cons ci ratio: 5.545766e-04	ci left: 9.608742e-01	ci right 9.614077e-01	k: 1941506	n:2020000
KS ci ratio: 1.498595e-01	ci left: 3.132372e-04	ci right 3.644507e-04	k: 683	n:2020000
CPAMD8   2020000 perm   2030 sec   (995 perm/sec)   p_kst 3.381188e-04   p_cons 9.611416e-01   p_joint 9.757426e-04

Joint ci ratio: 8.807472e-02	ci left: 9.319320e-04	ci right 1.018270e-03	k: 1978	n:2030000
Cons ci ratio: 5.531923e-04	ci left: 9.608771e-01	ci right 9.614093e-01	k: 1951122	n:2030000
KS ci ratio: 1.497502e-01	ci left: 3.121683e-04	ci right 3.631665e-04	k: 684	n:2030000
CPAMD8   2030000 perm   2047 sec   (992 perm/sec)   p_kst 3.369458e-04   p_cons 9.611438e-01   p_joint 9.743842e-04

Joint ci ratio: 8.780885e-02	ci left: 9.331167e-04	ci right 1.019290e-03	k: 1990	n:2040000
Cons ci ratio: 5.519124e-04	ci left: 9.608672e-01	ci right 9.613981e-01	k: 1960712	n:2040000
KS ci ratio: 1.493148e-01	ci left: 3.125255e-04	ci right 3.634204e-04	k: 688	n:2040000
CPAMD8   2040000 perm   2064 sec   (988 perm/sec)   p_kst 3.372549e-04   p_cons 9.611333e-01   p_joint 9.754902e-04

Joint ci ratio: 8.765496e-02	ci left: 9.319046e-04	ci right 1.017808e-03	k: 1997	n:2050000
Cons ci ratio: 5.504867e-04	ci left: 9.608785e-01	ci right 9.614080e-01	k: 1970345	n:2050000
KS ci ratio: 1.490987e-01	ci left: 3.119401e-04	ci right 3.626596e-04	k: 690	n:2050000
CPAMD8   2050000 perm   2081 sec   (985 perm/sec)   p_kst 3.365854e-04   p_cons 9.611439e-01   p_joint 9.741463e-04

Joint ci ratio: 8.756747e-02	ci left: 9.292799e-04	ci right 1.014851e-03	k: 2001	n:2060000
Cons ci ratio: 5.492111e-04	ci left: 9.608706e-01	ci right 9.613990e-01	k: 1979939	n:2060000
KS ci ratio: 1.488834e-01	ci left: 3.113605e-04	ci right 3.619062e-04	k: 692	n:2060000
CPAMD8   2060000 perm   2099 sec   (982 perm/sec)   p_kst 3.359223e-04   p_cons 9.611354e-01   p_joint 9.713592e-04

Joint ci ratio: 7.335198e-02	ci left: 1.327230e-03	ci right 1.428762e-03	k: 2851	n:2070000
Cons ci ratio: 5.478098e-04	ci left: 9.608813e-01	ci right 9.614083e-01	k: 1989571	n:2070000
KS ci ratio: 1.483491e-01	ci left: 3.121820e-04	ci right 3.626630e-04	k: 697	n:2070000
CPAMD8   2070000 perm   2116 sec   (978 perm/sec)   p_kst 3.367150e-04   p_cons 9.611454e-01   p_joint 1.377295e-03

Joint ci ratio: 7.382024e-02	ci left: 1.303860e-03	ci right 1.404268e-03	k: 2815	n:2080000
Cons ci ratio: 5.465422e-04	ci left: 9.608749e-01	ci right 9.614007e-01	k: 1999168	n:2080000
KS ci ratio: 1.480314e-01	ci left: 3.120700e-04	ci right 3.624152e-04	k: 700	n:2080000
CPAMD8   2080000 perm   2134 sec   (975 perm/sec)   p_kst 3.365385e-04   p_cons 9.611385e-01   p_joint 1.353365e-03

Joint ci ratio: 7.357236e-02	ci left: 1.306544e-03	ci right 1.406807e-03	k: 2834	n:2090000
Cons ci ratio: 5.451716e-04	ci left: 9.608840e-01	ci right 9.614085e-01	k: 2008797	n:2090000
KS ci ratio: 1.477156e-01	ci left: 3.119591e-04	ci right 3.621696e-04	k: 703	n:2090000
CPAMD8   2090000 perm   2152 sec   (971 perm/sec)   p_kst 3.363636e-04   p_cons 9.611469e-01   p_joint 1.355981e-03

Joint ci ratio: 7.345593e-02	ci left: 1.304530e-03	ci right 1.404473e-03	k: 2843	n:2100000
Cons ci ratio: 5.438354e-04	ci left: 9.608897e-01	ci right 9.614129e-01	k: 2018419	n:2100000
KS ci ratio: 1.477158e-01	ci left: 3.104736e-04	ci right 3.604450e-04	k: 703	n:2100000
CPAMD8   2100000 perm   2170 sec   (968 perm/sec)   p_kst 3.347619e-04   p_cons 9.611519e-01   p_joint 1.353810e-03

Joint ci ratio: 7.328863e-02	ci left: 1.304395e-03	ci right 1.404090e-03	k: 2856	n:2110000
Cons ci ratio: 5.424540e-04	ci left: 9.609029e-01	ci right 9.614247e-01	k: 2028057	n:2110000
KS ci ratio: 1.472979e-01	ci left: 3.108279e-04	ci right 3.607024e-04	k: 707	n:2110000
CPAMD8   2110000 perm   2188 sec   (965 perm/sec)   p_kst 3.350711e-04   p_cons 9.611645e-01   p_joint 1.353555e-03

Joint ci ratio: 7.309697e-02	ci left: 1.305188e-03	ci right 1.404672e-03	k: 2871	n:2120000
Cons ci ratio: 5.412505e-04	ci left: 9.608928e-01	ci right 9.614135e-01	k: 2037646	n:2120000
KS ci ratio: 1.467804e-01	ci left: 3.116335e-04	ci right 3.614462e-04	k: 712	n:2120000
CPAMD8   2120000 perm   2206 sec   (961 perm/sec)   p_kst 3.358491e-04   p_cons 9.611538e-01   p_joint 1.354245e-03

Joint ci ratio: 7.295743e-02	ci left: 1.304131e-03	ci right 1.403336e-03	k: 2882	n:2130000
Cons ci ratio: 5.400482e-04	ci left: 9.608837e-01	ci right 9.614033e-01	k: 2047237	n:2130000
KS ci ratio: 1.463704e-01	ci left: 3.119795e-04	ci right 3.616960e-04	k: 716	n:2130000
CPAMD8   2130000 perm   2224 sec   (958 perm/sec)   p_kst 3.361502e-04   p_cons 9.611441e-01   p_joint 1.353052e-03

Joint ci ratio: 7.278092e-02	ci left: 1.304460e-03	ci right 1.403440e-03	k: 2896	n:2140000
Cons ci ratio: 5.388302e-04	ci left: 9.608781e-01	ci right 9.613964e-01	k: 2056835	n:2140000
KS ci ratio: 1.461667e-01	ci left: 3.114220e-04	ci right 3.609746e-04	k: 718	n:2140000
CPAMD8   2140000 perm   2242 sec   (954 perm/sec)   p_kst 3.355140e-04   p_cons 9.611379e-01   p_joint 1.353271e-03

Joint ci ratio: 7.325106e-02	ci left: 1.281497e-03	ci right 1.379389e-03	k: 2859	n:2150000
Cons ci ratio: 5.376472e-04	ci left: 9.608687e-01	ci right 9.613859e-01	k: 2066425	n:2150000
KS ci ratio: 1.455606e-01	ci left: 3.126624e-04	ci right 3.621881e-04	k: 724	n:2150000
CPAMD8   2150000 perm   2261 sec   (951 perm/sec)   p_kst 3.367442e-04   p_cons 9.611279e-01   p_joint 1.329767e-03

Joint ci ratio: 7.334121e-02	ci left: 1.272382e-03	ci right 1.369703e-03	k: 2852	n:2160000
Cons ci ratio: 5.364320e-04	ci left: 9.608650e-01	ci right 9.613810e-01	k: 2076027	n:2160000
KS ci ratio: 1.453603e-01	ci left: 3.121071e-04	ci right 3.614709e-04	k: 726	n:2160000
CPAMD8   2160000 perm   2279 sec   (948 perm/sec)   p_kst 3.361111e-04   p_cons 9.611236e-01   p_joint 1.320370e-03

Joint ci ratio: 7.329001e-02	ci left: 1.268328e-03	ci right 1.365269e-03	k: 2856	n:2170000
Cons ci ratio: 5.351095e-04	ci left: 9.608775e-01	ci right 9.613922e-01	k: 2085664	n:2170000
KS ci ratio: 1.450613e-01	ci left: 3.120011e-04	ci right 3.612378e-04	k: 729	n:2170000
CPAMD8   2170000 perm   2297 sec   (945 perm/sec)   p_kst 3.359447e-04   p_cons 9.611355e-01   p_joint 1.316129e-03

Joint ci ratio: 7.309833e-02	ci left: 1.269265e-03	ci right 1.366013e-03	k: 2871	n:2180000
Cons ci ratio: 5.338951e-04	ci left: 9.608761e-01	ci right 9.613897e-01	k: 2095271	n:2180000
KS ci ratio: 1.444687e-01	ci left: 3.132225e-04	ci right 3.624327e-04	k: 735	n:2180000
CPAMD8   2180000 perm   2315 sec   (942 perm/sec)   p_kst 3.371560e-04   p_cons 9.611335e-01   p_joint 1.316972e-03

Joint ci ratio: 7.294612e-02	ci left: 1.268849e-03	ci right 1.365355e-03	k: 2883	n:2190000
Cons ci ratio: 5.326921e-04	ci left: 9.608742e-01	ci right 9.613867e-01	k: 2104877	n:2190000
KS ci ratio: 1.443707e-01	ci left: 3.122324e-04	ci right 3.612509e-04	k: 736	n:2190000
CPAMD8   2190000 perm   2334 sec   (938 perm/sec)   p_kst 3.360731e-04   p_cons 9.611311e-01   p_joint 1.316438e-03

Joint ci ratio: 7.298436e-02	ci left: 1.261742e-03	ci right 1.357760e-03	k: 2880	n:2200000
Cons ci ratio: 5.315328e-04	ci left: 9.608674e-01	ci right 9.613787e-01	k: 2114472	n:2200000
KS ci ratio: 1.441753e-01	ci left: 3.116894e-04	ci right 3.605507e-04	k: 738	n:2200000
CPAMD8   2200000 perm   2352 sec   (935 perm/sec)   p_kst 3.354545e-04   p_cons 9.611236e-01   p_joint 1.309091e-03

Joint ci ratio: 7.311174e-02	ci left: 1.251590e-03	ci right 1.347009e-03	k: 2870	n:2210000
Cons ci ratio: 5.304002e-04	ci left: 9.608579e-01	ci right 9.613681e-01	k: 2124061	n:2210000
KS ci ratio: 1.435934e-01	ci left: 3.128963e-04	ci right 3.617318e-04	k: 744	n:2210000
CPAMD8   2210000 perm   2371 sec   (932 perm/sec)   p_kst 3.366516e-04   p_cons 9.611136e-01   p_joint 1.298643e-03

Joint ci ratio: 7.404753e-02	ci left: 1.214116e-03	ci right 1.307913e-03	k: 2798	n:2220000
Cons ci ratio: 5.292047e-04	ci left: 9.608584e-01	ci right 9.613674e-01	k: 2133672	n:2220000
KS ci ratio: 1.434972e-01	ci left: 3.119211e-04	ci right 3.605690e-04	k: 745	n:2220000
CPAMD8   2220000 perm   2390 sec   (929 perm/sec)   p_kst 3.355856e-04   p_cons 9.611135e-01   p_joint 1.260360e-03

Joint ci ratio: 7.387616e-02	ci left: 1.214393e-03	ci right 1.307986e-03	k: 2811	n:2230000
Cons ci ratio: 5.280869e-04	ci left: 9.608490e-01	ci right 9.613570e-01	k: 2143261	n:2230000
KS ci ratio: 1.433053e-01	ci left: 3.113870e-04	ci right 3.598812e-04	k: 747	n:2230000
CPAMD8   2230000 perm   2409 sec   (926 perm/sec)   p_kst 3.349776e-04   p_cons 9.611036e-01   p_joint 1.260538e-03

Joint ci ratio: 7.370598e-02	ci left: 1.214668e-03	ci right 1.308057e-03	k: 2824	n:2240000
Cons ci ratio: 5.270517e-04	ci left: 9.608290e-01	ci right 9.613359e-01	k: 2152826	n:2240000
KS ci ratio: 1.430188e-01	ci left: 3.112882e-04	ci right 3.596618e-04	k: 750	n:2240000
CPAMD8   2240000 perm   2428 sec   (923 perm/sec)   p_kst 3.348214e-04   p_cons 9.610830e-01   p_joint 1.260714e-03

Joint ci ratio: 7.364096e-02	ci left: 1.211451e-03	ci right 1.304507e-03	k: 2829	n:2250000
Cons ci ratio: 5.259442e-04	ci left: 9.608202e-01	ci right 9.613261e-01	k: 2162416	n:2250000
KS ci ratio: 1.430189e-01	ci left: 3.099047e-04	ci right 3.580633e-04	k: 750	n:2250000
CPAMD8   2250000 perm   2447 sec   (920 perm/sec)   p_kst 3.333333e-04   p_cons 9.610738e-01   p_joint 1.257333e-03

Joint ci ratio: 7.338200e-02	ci left: 1.214778e-03	ci right 1.307747e-03	k: 2849	n:2260000
Cons ci ratio: 5.248312e-04	ci left: 9.608134e-01	ci right 9.613182e-01	k: 2172010	n:2260000
KS ci ratio: 1.421694e-01	ci left: 3.123737e-04	ci right 3.606032e-04	k: 759	n:2260000
CPAMD8   2260000 perm   2466 sec   (916 perm/sec)   p_kst 3.358407e-04   p_cons 9.610664e-01   p_joint 1.260619e-03

Joint ci ratio: 7.348554e-02	ci left: 1.205967e-03	ci right 1.298397e-03	k: 2841	n:2270000
Cons ci ratio: 5.236636e-04	ci left: 9.608154e-01	ci right 9.613191e-01	k: 2181624	n:2270000
KS ci ratio: 1.417967e-01	ci left: 3.126971e-04	ci right 3.608393e-04	k: 763	n:2270000
CPAMD8   2270000 perm   2485 sec   (914 perm/sec)   p_kst 3.361233e-04   p_cons 9.610678e-01   p_joint 1.251542e-03

Joint ci ratio: 7.342111e-02	ci left: 1.202830e-03	ci right 1.294936e-03	k: 2846	n:2280000
Cons ci ratio: 5.225559e-04	ci left: 9.608099e-01	ci right 9.613126e-01	k: 2191221	n:2280000
KS ci ratio: 1.416115e-01	ci left: 3.121717e-04	ci right 3.601649e-04	k: 765	n:2280000
CPAMD8   2280000 perm   2504 sec   (911 perm/sec)   p_kst 3.355263e-04   p_cons 9.610618e-01   p_joint 1.248246e-03

Joint ci ratio: 7.416844e-02	ci left: 1.173145e-03	ci right 1.263932e-03	k: 2789	n:2290000
Cons ci ratio: 5.214794e-04	ci left: 9.608010e-01	ci right 9.613026e-01	k: 2200810	n:2290000
KS ci ratio: 1.411516e-01	ci left: 3.129147e-04	ci right 3.608528e-04	k: 770	n:2290000
CPAMD8   2290000 perm   2523 sec   (908 perm/sec)   p_kst 3.362445e-04   p_cons 9.610524e-01   p_joint 1.217904e-03

Joint ci ratio: 7.495274e-02	ci left: 1.143297e-03	ci right 1.232750e-03	k: 2731	n:2300000
Cons ci ratio: 5.203854e-04	ci left: 9.607957e-01	ci right 9.612962e-01	k: 2210407	n:2300000
KS ci ratio: 1.409689e-01	ci left: 3.123931e-04	ci right 3.601841e-04	k: 772	n:2300000
CPAMD8   2300000 perm   2543 sec   (905 perm/sec)   p_kst 3.356522e-04   p_cons 9.610465e-01   p_joint 1.187391e-03

Joint ci ratio: 7.269667e-02	ci left: 1.211433e-03	ci right 1.303244e-03	k: 2903	n:2310000
Cons ci ratio: 5.193222e-04	ci left: 9.607869e-01	ci right 9.612864e-01	k: 2219996	n:2310000
KS ci ratio: 1.406055e-01	ci left: 3.127113e-04	ci right 3.604174e-04	k: 776	n:2310000
CPAMD8   2310000 perm   2561 sec   (902 perm/sec)   p_kst 3.359307e-04   p_cons 9.610372e-01   p_joint 1.256710e-03

Joint ci ratio: 7.247233e-02	ci left: 1.213830e-03	ci right 1.305526e-03	k: 2921	n:2320000
Cons ci ratio: 5.181761e-04	ci left: 9.607912e-01	ci right 9.612896e-01	k: 2229615	n:2320000
KS ci ratio: 1.404250e-01	ci left: 3.121952e-04	ci right 3.597562e-04	k: 778	n:2320000
CPAMD8   2320000 perm   2581 sec   (899 perm/sec)   p_kst 3.353448e-04   p_cons 9.610409e-01   p_joint 1.259052e-03

Joint ci ratio: 7.234867e-02	ci left: 1.212834e-03	ci right 1.304292e-03	k: 2931	n:2330000
Cons ci ratio: 5.171648e-04	ci left: 9.607769e-01	ci right 9.612743e-01	k: 2239191	n:2330000
KS ci ratio: 1.402451e-01	ci left: 3.116835e-04	ci right 3.591007e-04	k: 780	n:2330000
CPAMD8   2330000 perm   2601 sec   (896 perm/sec)   p_kst 3.347639e-04   p_cons 9.610262e-01   p_joint 1.257940e-03

Joint ci ratio: 7.210306e-02	ci left: 1.216044e-03	ci right 1.307420e-03	k: 2951	n:2340000
Cons ci ratio: 5.160947e-04	ci left: 9.607722e-01	ci right 9.612686e-01	k: 2248789	n:2340000
KS ci ratio: 1.397983e-01	ci left: 3.124135e-04	ci right 3.597776e-04	k: 785	n:2340000
CPAMD8   2340000 perm   2620 sec   (893 perm/sec)   p_kst 3.354701e-04   p_cons 9.610209e-01   p_joint 1.261111e-03

Joint ci ratio: 7.293674e-02	ci left: 1.182875e-03	ci right 1.272830e-03	k: 2884	n:2350000
Cons ci ratio: 5.150253e-04	ci left: 9.607683e-01	ci right 9.612637e-01	k: 2258389	n:2350000
KS ci ratio: 1.392676e-01	ci left: 3.135481e-04	ci right 3.608889e-04	k: 791	n:2350000
CPAMD8   2350000 perm   2640 sec   (890 perm/sec)   p_kst 3.365957e-04   p_cons 9.610166e-01   p_joint 1.227234e-03

Joint ci ratio: 7.281069e-02	ci left: 1.182023e-03	ci right 1.271751e-03	k: 2894	n:2360000
Cons ci ratio: 5.138899e-04	ci left: 9.607752e-01	ci right 9.612695e-01	k: 2268014	n:2360000
KS ci ratio: 1.392677e-01	ci left: 3.122195e-04	ci right 3.593597e-04	k: 791	n:2360000
CPAMD8   2360000 perm   2659 sec   (888 perm/sec)   p_kst 3.351695e-04   p_cons 9.610229e-01   p_joint 1.226271e-03

Joint ci ratio: 7.271036e-02	ci left: 1.180349e-03	ci right 1.269822e-03	k: 2902	n:2370000
Cons ci ratio: 5.128139e-04	ci left: 9.607743e-01	ci right 9.612676e-01	k: 2277621	n:2370000
KS ci ratio: 1.391800e-01	ci left: 3.113094e-04	ci right 3.582801e-04	k: 792	n:2370000
CPAMD8   2370000 perm   2678 sec   (885 perm/sec)   p_kst 3.341772e-04   p_cons 9.610215e-01   p_joint 1.224473e-03

Joint ci ratio: 7.251076e-02	ci left: 1.181991e-03	ci right 1.271331e-03	k: 2918	n:2380000
Cons ci ratio: 5.117159e-04	ci left: 9.607777e-01	ci right 9.612699e-01	k: 2287238	n:2380000
KS ci ratio: 1.390924e-01	ci left: 3.104069e-04	ci right 3.572095e-04	k: 793	n:2380000
CPAMD8   2380000 perm   2698 sec   (882 perm/sec)   p_kst 3.331933e-04   p_cons 9.610244e-01   p_joint 1.226050e-03

Joint ci ratio: 7.233747e-02	ci left: 1.182797e-03	ci right 1.271975e-03	k: 2932	n:2390000
Cons ci ratio: 5.106421e-04	ci left: 9.607786e-01	ci right 9.612697e-01	k: 2296849	n:2390000
KS ci ratio: 1.387433e-01	ci left: 3.107236e-04	ci right 3.574467e-04	k: 797	n:2390000
CPAMD8   2390000 perm   2718 sec   (879 perm/sec)   p_kst 3.334728e-04   p_cons 9.610247e-01   p_joint 1.226778e-03

Joint ci ratio: 7.215316e-02	ci left: 1.184005e-03	ci right 1.273038e-03	k: 2947	n:2400000
Cons ci ratio: 5.096317e-04	ci left: 9.607710e-01	ci right 9.612612e-01	k: 2306440	n:2400000
KS ci ratio: 1.383106e-01	ci left: 3.114400e-04	ci right 3.581128e-04	k: 802	n:2400000
CPAMD8   2400000 perm   2737 sec   (877 perm/sec)   p_kst 3.341667e-04   p_cons 9.610167e-01   p_joint 1.227917e-03

Joint ci ratio: 7.197025e-02	ci left: 1.185204e-03	ci right 1.274092e-03	k: 2962	n:2410000
Cons ci ratio: 5.085765e-04	ci left: 9.607711e-01	ci right 9.612602e-01	k: 2316049	n:2410000
KS ci ratio: 1.377967e-01	ci left: 3.125514e-04	ci right 3.592024e-04	k: 808	n:2410000
CPAMD8   2410000 perm   2757 sec   (874 perm/sec)   p_kst 3.352697e-04   p_cons 9.610162e-01   p_joint 1.229046e-03

Joint ci ratio: 7.187335e-02	ci left: 1.183553e-03	ci right 1.272193e-03	k: 2970	n:2420000
Cons ci ratio: 5.074831e-04	ci left: 9.607777e-01	ci right 9.612658e-01	k: 2325674	n:2420000
KS ci ratio: 1.374573e-01	ci left: 3.128559e-04	ci right 3.594279e-04	k: 812	n:2420000
CPAMD8   2420000 perm   2777 sec   (871 perm/sec)   p_kst 3.355372e-04   p_cons 9.610223e-01   p_joint 1.227273e-03

Joint ci ratio: 7.172864e-02	ci left: 1.183532e-03	ci right 1.271984e-03	k: 2982	n:2430000
Cons ci ratio: 5.063300e-04	ci left: 9.607942e-01	ci right 9.612812e-01	k: 2335323	n:2430000
KS ci ratio: 1.372886e-01	ci left: 3.123631e-04	ci right 3.588000e-04	k: 814	n:2430000
CPAMD8   2430000 perm   2798 sec   (869 perm/sec)   p_kst 3.349794e-04   p_cons 9.610383e-01   p_joint 1.227160e-03

Joint ci ratio: 7.230137e-02	ci left: 1.159766e-03	ci right 1.247163e-03	k: 2935	n:2440000
Cons ci ratio: 5.052869e-04	ci left: 9.607954e-01	ci right 9.612814e-01	k: 2344935	n:2440000
KS ci ratio: 1.370366e-01	ci left: 3.122703e-04	ci right 3.586012e-04	k: 817	n:2440000
CPAMD8   2440000 perm   2818 sec   (866 perm/sec)   p_kst 3.348361e-04   p_cons 9.610389e-01   p_joint 1.202869e-03

Joint ci ratio: 7.212957e-02	ci left: 1.160643e-03	ci right 1.247890e-03	k: 2949	n:2450000
Cons ci ratio: 5.042612e-04	ci left: 9.607949e-01	ci right 9.612799e-01	k: 2354543	n:2450000
KS ci ratio: 1.366196e-01	ci left: 3.129667e-04	ci right 3.592482e-04	k: 822	n:2450000
CPAMD8   2450000 perm   2839 sec   (863 perm/sec)   p_kst 3.355102e-04   p_cons 9.610380e-01   p_joint 1.203673e-03

Joint ci ratio: 7.200766e-02	ci left: 1.159917e-03	ci right 1.246955e-03	k: 2959	n:2460000
Cons ci ratio: 5.032007e-04	ci left: 9.608005e-01	ci right 9.612845e-01	k: 2364166	n:2460000
KS ci ratio: 1.366197e-01	ci left: 3.116944e-04	ci right 3.577878e-04	k: 822	n:2460000
CPAMD8   2460000 perm   2861 sec   (860 perm/sec)   p_kst 3.341463e-04   p_cons 9.610431e-01   p_joint 1.202846e-03

Joint ci ratio: 7.185004e-02	ci left: 1.160389e-03	ci right 1.247265e-03	k: 2972	n:2470000
Cons ci ratio: 5.021469e-04	ci left: 9.608061e-01	ci right 9.612891e-01	k: 2373789	n:2470000
KS ci ratio: 1.361244e-01	ci left: 3.127788e-04	ci right 3.588513e-04	k: 828	n:2470000
CPAMD8   2470000 perm   2882 sec   (857 perm/sec)   p_kst 3.352227e-04   p_cons 9.610482e-01   p_joint 1.203239e-03

Joint ci ratio: 7.172953e-02	ci left: 1.159670e-03	ci right 1.246340e-03	k: 2982	n:2480000
Cons ci ratio: 5.011591e-04	ci left: 9.608028e-01	ci right 9.612848e-01	k: 2383390	n:2480000
KS ci ratio: 1.360424e-01	ci left: 3.119071e-04	ci right 3.578212e-04	k: 829	n:2480000
CPAMD8   2480000 perm   2903 sec   (854 perm/sec)   p_kst 3.342742e-04   p_cons 9.610444e-01   p_joint 1.202419e-03

Joint ci ratio: 7.163360e-02	ci left: 1.158168e-03	ci right 1.244605e-03	k: 2990	n:2490000
Cons ci ratio: 5.001529e-04	ci left: 9.608031e-01	ci right 9.612842e-01	k: 2393000	n:2490000
KS ci ratio: 1.358788e-01	ci left: 3.114303e-04	ci right 3.572147e-04	k: 831	n:2490000
CPAMD8   2490000 perm   2924 sec   (852 perm/sec)   p_kst 3.337349e-04   p_cons 9.610442e-01   p_joint 1.200803e-03

Joint ci ratio: 7.147842e-02	ci left: 1.158642e-03	ci right 1.244920e-03	k: 3003	n:2500000
Cons ci ratio: 4.991181e-04	ci left: 9.608086e-01	ci right 9.612887e-01	k: 2402623	n:2500000
KS ci ratio: 1.355533e-01	ci left: 3.117303e-04	ci right 3.574402e-04	k: 835	n:2500000
CPAMD8   2500000 perm   2944 sec   (849 perm/sec)   p_kst 3.340000e-04   p_cons 9.610492e-01   p_joint 1.201200e-03

Joint ci ratio: 7.126514e-02	ci left: 1.161070e-03	ci right 1.247259e-03	k: 3021	n:2510000
Cons ci ratio: 4.981241e-04	ci left: 9.608089e-01	ci right 9.612880e-01	k: 2412233	n:2510000
KS ci ratio: 1.351497e-01	ci left: 3.124129e-04	ci right 3.580755e-04	k: 840	n:2510000
CPAMD8   2510000 perm   2965 sec   (846 perm/sec)   p_kst 3.346614e-04   p_cons 9.610490e-01   p_joint 1.203586e-03

Joint ci ratio: 7.110061e-02	ci left: 1.161919e-03	ci right 1.247964e-03	k: 3035	n:2520000
Cons ci ratio: 4.970307e-04	ci left: 9.608251e-01	ci right 9.613032e-01	k: 2421883	n:2520000
KS ci ratio: 1.347497e-01	ci left: 3.130903e-04	ci right 3.587057e-04	k: 845	n:2520000
CPAMD8   2520000 perm   2986 sec   (844 perm/sec)   p_kst 3.353175e-04   p_cons 9.610647e-01   p_joint 1.204365e-03

Joint ci ratio: 7.113598e-02	ci left: 1.156162e-03	ci right 1.241825e-03	k: 3032	n:2530000
Cons ci ratio: 4.960858e-04	ci left: 9.608198e-01	ci right 9.612969e-01	k: 2431479	n:2530000
KS ci ratio: 1.345115e-01	ci left: 3.129987e-04	ci right 3.585135e-04	k: 848	n:2530000
CPAMD8   2530000 perm   3007 sec   (841 perm/sec)   p_kst 3.351779e-04   p_cons 9.610589e-01   p_joint 1.198419e-03

Joint ci ratio: 7.096068e-02	ci left: 1.157410e-03	ci right 1.242946e-03	k: 3047	n:2540000
Cons ci ratio: 4.951046e-04	ci left: 9.608208e-01	ci right 9.612970e-01	k: 2441091	n:2540000
KS ci ratio: 1.341171e-01	ci left: 3.136687e-04	ci right 3.591367e-04	k: 853	n:2540000
CPAMD8   2540000 perm   3028 sec   (839 perm/sec)   p_kst 3.358268e-04   p_cons 9.610594e-01   p_joint 1.199606e-03

Joint ci ratio: 7.085619e-02	ci left: 1.156338e-03	ci right 1.241664e-03	k: 3056	n:2550000
Cons ci ratio: 4.941758e-04	ci left: 9.608148e-01	ci right 9.612901e-01	k: 2450685	n:2550000
KS ci ratio: 1.338041e-01	ci left: 3.139547e-04	ci right 3.593494e-04	k: 857	n:2550000
CPAMD8   2550000 perm   3049 sec   (836 perm/sec)   p_kst 3.360784e-04   p_cons 9.610529e-01   p_joint 1.198431e-03

Joint ci ratio: 7.076371e-02	ci left: 1.154891e-03	ci right 1.239994e-03	k: 3064	n:2560000
Cons ci ratio: 4.932008e-04	ci left: 9.608166e-01	ci right 9.612910e-01	k: 2460299	n:2560000
KS ci ratio: 1.337262e-01	ci left: 3.131059e-04	ci right 3.583494e-04	k: 858	n:2560000
CPAMD8   2560000 perm   3070 sec   (834 perm/sec)   p_kst 3.351563e-04   p_cons 9.610543e-01   p_joint 1.196875e-03

Joint ci ratio: 7.076388e-02	ci left: 1.150397e-03	ci right 1.235169e-03	k: 3064	n:2570000
Cons ci ratio: 4.922186e-04	ci left: 9.608204e-01	ci right 9.612938e-01	k: 2469918	n:2570000
KS ci ratio: 1.334933e-01	ci left: 3.130159e-04	ci right 3.581614e-04	k: 861	n:2570000
CPAMD8   2570000 perm   3092 sec   (831 perm/sec)   p_kst 3.350195e-04   p_cons 9.610576e-01   p_joint 1.192218e-03

Joint ci ratio: 7.061427e-02	ci left: 1.150888e-03	ci right 1.235509e-03	k: 3077	n:2580000
Cons ci ratio: 4.911788e-04	ci left: 9.608338e-01	ci right 9.613062e-01	k: 2479562	n:2580000
KS ci ratio: 1.330311e-01	ci left: 3.140507e-04	ci right 3.591762e-04	k: 867	n:2580000
CPAMD8   2580000 perm   3113 sec   (829 perm/sec)   p_kst 3.360465e-04   p_cons 9.610705e-01   p_joint 1.192636e-03

Joint ci ratio: 7.048844e-02	ci left: 1.150617e-03	ci right 1.235061e-03	k: 3088	n:2590000
Cons ci ratio: 4.902415e-04	ci left: 9.608324e-01	ci right 9.613040e-01	k: 2489168	n:2590000
KS ci ratio: 1.325736e-01	ci left: 3.150778e-04	ci right 3.601830e-04	k: 873	n:2590000
CPAMD8   2590000 perm   3135 sec   (826 perm/sec)   p_kst 3.370656e-04   p_cons 9.610687e-01   p_joint 1.192278e-03

Joint ci ratio: 7.042016e-02	ci left: 1.148458e-03	ci right 1.232659e-03	k: 3094	n:2600000
Cons ci ratio: 4.892543e-04	ci left: 9.608396e-01	ci right 9.613102e-01	k: 2498796	n:2600000
KS ci ratio: 1.324222e-01	ci left: 3.146097e-04	ci right 3.595924e-04	k: 875	n:2600000
CPAMD8   2600000 perm   3156 sec   (824 perm/sec)   p_kst 3.365385e-04   p_cons 9.610754e-01   p_joint 1.190000e-03

Joint ci ratio: 7.026140e-02	ci left: 1.149328e-03	ci right 1.233395e-03	k: 3108	n:2610000
Cons ci ratio: 4.883255e-04	ci left: 9.608386e-01	ci right 9.613083e-01	k: 2508403	n:2610000
KS ci ratio: 1.321960e-01	ci left: 3.145157e-04	ci right 3.594021e-04	k: 878	n:2610000
CPAMD8   2610000 perm   3178 sec   (821 perm/sec)   p_kst 3.363985e-04   p_cons 9.610739e-01   p_joint 1.190805e-03

Joint ci ratio: 7.012620e-02	ci left: 1.149441e-03	ci right 1.233348e-03	k: 3120	n:2620000
Cons ci ratio: 4.873672e-04	ci left: 9.608430e-01	ci right 9.613117e-01	k: 2518024	n:2620000
KS ci ratio: 1.320459e-01	ci left: 3.140533e-04	ci right 3.588189e-04	k: 880	n:2620000
CPAMD8   2620000 perm   3200 sec   (819 perm/sec)   p_kst 3.358779e-04   p_cons 9.610779e-01   p_joint 1.190840e-03

Joint ci ratio: 7.002534e-02	ci left: 1.148432e-03	ci right 1.232140e-03	k: 3129	n:2630000
Cons ci ratio: 4.864243e-04	ci left: 9.608458e-01	ci right 9.613137e-01	k: 2527641	n:2630000
KS ci ratio: 1.318963e-01	ci left: 3.135946e-04	ci right 3.582401e-04	k: 882	n:2630000
CPAMD8   2630000 perm   3221 sec   (817 perm/sec)   p_kst 3.353612e-04   p_cons 9.610802e-01   p_joint 1.189734e-03

Joint ci ratio: 7.012651e-02	ci left: 1.140733e-03	ci right 1.224004e-03	k: 3120	n:2640000
Cons ci ratio: 4.855165e-04	ci left: 9.608440e-01	ci right 9.613110e-01	k: 2537246	n:2640000
KS ci ratio: 1.318218e-01	ci left: 3.127730e-04	ci right 3.572744e-04	k: 883	n:2640000
CPAMD8   2640000 perm   3242 sec   (814 perm/sec)   p_kst 3.344697e-04   p_cons 9.610780e-01   p_joint 1.181818e-03

Joint ci ratio: 6.716452e-02	ci left: 1.240648e-03	ci right 1.327240e-03	k: 3401	n:2650000
Cons ci ratio: 4.707154e-04	ci left: 9.629681e-01	ci right 9.634218e-01	k: 2552468	n:2650000
KS ci ratio: 1.317473e-01	ci left: 3.119576e-04	ci right 3.563160e-04	k: 884	n:2650000
CPAMD8   2650000 perm   3264 sec   (812 perm/sec)   p_kst 3.335849e-04   p_cons 9.631955e-01   p_joint 1.283396e-03

Joint ci ratio: 6.708574e-02	ci left: 1.238941e-03	ci right 1.325308e-03	k: 3409	n:2660000
Cons ci ratio: 4.697998e-04	ci left: 9.629731e-01	ci right 9.634259e-01	k: 2562112	n:2660000
KS ci ratio: 1.315987e-01	ci left: 3.115120e-04	ci right 3.557531e-04	k: 886	n:2660000
CPAMD8   2660000 perm   3287 sec   (809 perm/sec)   p_kst 3.330827e-04   p_cons 9.632000e-01   p_joint 1.281579e-03

Joint ci ratio: 6.812394e-02	ci left: 1.196376e-03	ci right 1.281117e-03	k: 3306	n:2670000
Cons ci ratio: 4.689737e-04	ci left: 9.629652e-01	ci right 9.634173e-01	k: 2571722	n:2670000
KS ci ratio: 1.313768e-01	ci left: 3.114319e-04	ci right 3.555812e-04	k: 889	n:2670000
CPAMD8   2670000 perm   3310 sec   (807 perm/sec)   p_kst 3.329588e-04   p_cons 9.631918e-01   p_joint 1.238202e-03

Joint ci ratio: 6.795969e-02	ci left: 1.197780e-03	ci right 1.282408e-03	k: 3322	n:2680000
Cons ci ratio: 4.680189e-04	ci left: 9.629777e-01	ci right 9.634288e-01	k: 2581386	n:2680000
KS ci ratio: 1.310825e-01	ci left: 3.117134e-04	ci right 3.557960e-04	k: 893	n:2680000
CPAMD8   2680000 perm   3332 sec   (804 perm/sec)   p_kst 3.332090e-04   p_cons 9.632037e-01   p_joint 1.239552e-03

Joint ci ratio: 6.781696e-02	ci left: 1.198443e-03	ci right 1.282933e-03	k: 3336	n:2690000
Cons ci ratio: 4.671531e-04	ci left: 9.629773e-01	ci right 9.634276e-01	k: 2591016	n:2690000
KS ci ratio: 1.307174e-01	ci left: 3.123525e-04	ci right 3.563929e-04	k: 898	n:2690000
CPAMD8   2690000 perm   3354 sec   (802 perm/sec)   p_kst 3.338290e-04   p_cons 9.632030e-01   p_joint 1.240149e-03

Joint ci ratio: 6.770548e-02	ci left: 1.198010e-03	ci right 1.282325e-03	k: 3347	n:2700000
Cons ci ratio: 4.663165e-04	ci left: 9.629733e-01	ci right 9.634228e-01	k: 2600636	n:2700000
KS ci ratio: 1.306449e-01	ci left: 3.115539e-04	ci right 3.554554e-04	k: 899	n:2700000
CPAMD8   2700000 perm   3378 sec   (799 perm/sec)   p_kst 3.329630e-04   p_cons 9.631985e-01   p_joint 1.239630e-03

Joint ci ratio: 6.761471e-02	ci left: 1.196854e-03	ci right 1.280970e-03	k: 3356	n:2710000
Cons ci ratio: 4.654650e-04	ci left: 9.629722e-01	ci right 9.634209e-01	k: 2610264	n:2710000
KS ci ratio: 1.303555e-01	ci left: 3.118320e-04	ci right 3.556679e-04	k: 903	n:2710000
CPAMD8   2710000 perm   3401 sec   (797 perm/sec)   p_kst 3.332103e-04   p_cons 9.631970e-01   p_joint 1.238376e-03

Joint ci ratio: 6.800130e-02	ci left: 1.178720e-03	ci right 1.262054e-03	k: 3318	n:2720000
Cons ci ratio: 4.646278e-04	ci left: 9.629697e-01	ci right 9.634176e-01	k: 2619888	n:2720000
KS ci ratio: 1.302835e-01	ci left: 3.110413e-04	ci right 3.547399e-04	k: 904	n:2720000
CPAMD8   2720000 perm   3423 sec   (795 perm/sec)   p_kst 3.323529e-04   p_cons 9.631941e-01   p_joint 1.219853e-03

Joint ci ratio: 6.792977e-02	ci left: 1.176923e-03	ci right 1.260039e-03	k: 3325	n:2730000
Cons ci ratio: 4.637280e-04	ci left: 9.629775e-01	ci right 9.634245e-01	k: 2629540	n:2730000
KS ci ratio: 1.302836e-01	ci left: 3.099019e-04	ci right 3.534405e-04	k: 904	n:2730000
CPAMD8   2730000 perm   3446 sec   (792 perm/sec)   p_kst 3.311355e-04   p_cons 9.632015e-01   p_joint 1.217949e-03

Joint ci ratio: 6.832181e-02	ci left: 1.158994e-03	ci right 1.241336e-03	k: 3287	n:2740000
Cons ci ratio: 4.628762e-04	ci left: 9.629786e-01	ci right 9.634248e-01	k: 2639174	n:2740000
KS ci ratio: 1.300682e-01	ci left: 3.098301e-04	ci right 3.532811e-04	k: 907	n:2740000
CPAMD8   2740000 perm   3469 sec   (790 perm/sec)   p_kst 3.310219e-04   p_cons 9.632022e-01   p_joint 1.199635e-03

Joint ci ratio: 6.823889e-02	ci left: 1.157639e-03	ci right 1.239780e-03	k: 3295	n:2750000
Cons ci ratio: 4.620434e-04	ci left: 9.629775e-01	ci right 9.634229e-01	k: 2648802	n:2750000
KS ci ratio: 1.298539e-01	ci left: 3.097589e-04	ci right 3.531228e-04	k: 910	n:2750000
CPAMD8   2750000 perm   3491 sec   (788 perm/sec)   p_kst 3.309091e-04   p_cons 9.632007e-01   p_joint 1.198182e-03

Joint ci ratio: 6.818728e-02	ci left: 1.155226e-03	ci right 1.237131e-03	k: 3300	n:2760000
Cons ci ratio: 4.612150e-04	ci left: 9.629765e-01	ci right 9.634211e-01	k: 2658430	n:2760000
KS ci ratio: 1.298539e-01	ci left: 3.086366e-04	ci right 3.518434e-04	k: 910	n:2760000
CPAMD8   2760000 perm   3513 sec   (786 perm/sec)   p_kst 3.297101e-04   p_cons 9.631993e-01   p_joint 1.195652e-03

Joint ci ratio: 6.805339e-02	ci left: 1.155668e-03	ci right 1.237438e-03	k: 3313	n:2770000
Cons ci ratio: 4.603911e-04	ci left: 9.629754e-01	ci right 9.634192e-01	k: 2668058	n:2770000
KS ci ratio: 1.295698e-01	ci left: 3.089195e-04	ci right 3.520641e-04	k: 914	n:2770000
CPAMD8   2770000 perm   3536 sec   (783 perm/sec)   p_kst 3.299639e-04   p_cons 9.631978e-01   p_joint 1.196029e-03

Joint ci ratio: 6.799195e-02	ci left: 1.153633e-03	ci right 1.235182e-03	k: 3319	n:2780000
Cons ci ratio: 4.595926e-04	ci left: 9.629712e-01	ci right 9.634142e-01	k: 2677677	n:2780000
KS ci ratio: 1.291470e-01	ci left: 3.098968e-04	ci right 3.530257e-04	k: 920	n:2780000
CPAMD8   2780000 perm   3561 sec   (781 perm/sec)   p_kst 3.309353e-04   p_cons 9.631932e-01   p_joint 1.193885e-03

Joint ci ratio: 6.787960e-02	ci left: 1.153374e-03	ci right 1.234764e-03	k: 3330	n:2790000
Cons ci ratio: 4.587425e-04	ci left: 9.629755e-01	ci right 9.634178e-01	k: 2687320	n:2790000
KS ci ratio: 1.290070e-01	ci left: 3.094797e-04	ci right 3.525004e-04	k: 922	n:2790000
CPAMD8   2790000 perm   3583 sec   (779 perm/sec)   p_kst 3.304659e-04   p_cons 9.631971e-01   p_joint 1.193548e-03

Joint ci ratio: 6.814654e-02	ci left: 1.140126e-03	ci right 1.220911e-03	k: 3304	n:2800000
Cons ci ratio: 4.579594e-04	ci left: 9.629702e-01	ci right 9.634117e-01	k: 2696936	n:2800000
KS ci ratio: 1.288675e-01	ci left: 3.090657e-04	ci right 3.519788e-04	k: 924	n:2800000
CPAMD8   2800000 perm   3606 sec   (776 perm/sec)   p_kst 3.300000e-04   p_cons 9.631914e-01   p_joint 1.180000e-03

Joint ci ratio: 6.796164e-02	ci left: 1.142366e-03	ci right 1.223081e-03	k: 3322	n:2810000
Cons ci ratio: 4.571505e-04	ci left: 9.629696e-01	ci right 9.634102e-01	k: 2706565	n:2810000
KS ci ratio: 1.284515e-01	ci left: 3.100323e-04	ci right 3.529301e-04	k: 930	n:2810000
CPAMD8   2810000 perm   3629 sec   (774 perm/sec)   p_kst 3.309609e-04   p_cons 9.631904e-01   p_joint 1.182206e-03

Joint ci ratio: 6.790044e-02	ci left: 1.140406e-03	ci right 1.220907e-03	k: 3328	n:2820000
Cons ci ratio: 4.563436e-04	ci left: 9.629693e-01	ci right 9.634092e-01	k: 2716195	n:2820000
KS ci ratio: 1.282451e-01	ci left: 3.099626e-04	ci right 3.527765e-04	k: 933	n:2820000
CPAMD8   2820000 perm   3653 sec   (772 perm/sec)   p_kst 3.308511e-04   p_cons 9.631897e-01   p_joint 1.180142e-03

Joint ci ratio: 6.810572e-02	ci left: 1.129429e-03	ci right 1.209406e-03	k: 3308	n:2830000
Cons ci ratio: 4.555386e-04	ci left: 9.629694e-01	ci right 9.634085e-01	k: 2725826	n:2830000
KS ci ratio: 1.279713e-01	ci left: 3.102354e-04	ci right 3.529887e-04	k: 937	n:2830000
CPAMD8   2830000 perm   3675 sec   (770 perm/sec)   p_kst 3.310954e-04   p_cons 9.631894e-01   p_joint 1.168905e-03

Joint ci ratio: 6.801332e-02	ci left: 1.128568e-03	ci right 1.208371e-03	k: 3317	n:2840000
Cons ci ratio: 4.547334e-04	ci left: 9.629701e-01	ci right 9.634085e-01	k: 2735459	n:2840000
KS ci ratio: 1.277672e-01	ci left: 3.101656e-04	ci right 3.528359e-04	k: 940	n:2840000
CPAMD8   2840000 perm   3699 sec   (768 perm/sec)   p_kst 3.309859e-04   p_cons 9.631898e-01   p_joint 1.167958e-03

Joint ci ratio: 6.787025e-02	ci left: 1.129436e-03	ci right 1.209126e-03	k: 3331	n:2850000
Cons ci ratio: 4.539145e-04	ci left: 9.629737e-01	ci right 9.634113e-01	k: 2745100	n:2850000
KS ci ratio: 1.272945e-01	ci left: 3.114551e-04	ci right 3.541323e-04	k: 947	n:2850000
CPAMD8   2850000 perm   3722 sec   (766 perm/sec)   p_kst 3.322807e-04   p_cons 9.631930e-01   p_joint 1.168772e-03

Joint ci ratio: 6.782964e-02	ci left: 1.126862e-03	ci right 1.206321e-03	k: 3335	n:2860000
Cons ci ratio: 4.530821e-04	ci left: 9.629801e-01	ci right 9.634169e-01	k: 2754749	n:2860000
KS ci ratio: 1.271604e-01	ci left: 3.110431e-04	ci right 3.536156e-04	k: 949	n:2860000
CPAMD8   2860000 perm   3746 sec   (764 perm/sec)   p_kst 3.318182e-04   p_cons 9.631990e-01   p_joint 1.166084e-03

Joint ci ratio: 6.790114e-02	ci left: 1.120538e-03	ci right 1.199638e-03	k: 3328	n:2870000
Cons ci ratio: 4.522342e-04	ci left: 9.629896e-01	ci right 9.634255e-01	k: 2764407	n:2870000
KS ci ratio: 1.270268e-01	ci left: 3.106341e-04	ci right 3.531025e-04	k: 951	n:2870000
CPAMD8   2870000 perm   3769 sec   (761 perm/sec)   p_kst 3.313589e-04   p_cons 9.632080e-01   p_joint 1.159582e-03

Joint ci ratio: 6.804467e-02	ci left: 1.111869e-03	ci right 1.190529e-03	k: 3314	n:2880000
Cons ci ratio: 4.514464e-04	ci left: 9.629903e-01	ci right 9.634255e-01	k: 2774040	n:2880000
KS ci ratio: 1.268272e-01	ci left: 3.105641e-04	ci right 3.529512e-04	k: 954	n:2880000
CPAMD8   2880000 perm   3793 sec   (759 perm/sec)   p_kst 3.312500e-04   p_cons 9.632083e-01   p_joint 1.150694e-03

Joint ci ratio: 6.793207e-02	ci left: 1.111763e-03	ci right 1.190280e-03	k: 3325	n:2890000
Cons ci ratio: 4.506934e-04	ci left: 9.629861e-01	ci right 9.634206e-01	k: 2783659	n:2890000
KS ci ratio: 1.266284e-01	ci left: 3.104946e-04	ci right 3.528008e-04	k: 957	n:2890000
CPAMD8   2890000 perm   3817 sec   (757 perm/sec)   p_kst 3.311419e-04   p_cons 9.632038e-01   p_joint 1.150519e-03

Joint ci ratio: 6.780984e-02	ci left: 1.111997e-03	ci right 1.190384e-03	k: 3337	n:2900000
Cons ci ratio: 4.499990e-04	ci left: 9.629733e-01	ci right 9.634071e-01	k: 2793253	n:2900000
KS ci ratio: 1.262337e-01	ci left: 3.114275e-04	ci right 3.537186e-04	k: 963	n:2900000
CPAMD8   2900000 perm   3842 sec   (755 perm/sec)   p_kst 3.320690e-04   p_cons 9.631907e-01   p_joint 1.150690e-03

Joint ci ratio: 6.767817e-02	ci left: 1.112567e-03	ci right 1.190836e-03	k: 3350	n:2910000
Cons ci ratio: 4.492009e-04	ci left: 9.629775e-01	ci right 9.634105e-01	k: 2802896	n:2910000
KS ci ratio: 1.259726e-01	ci left: 3.116885e-04	ci right 3.539210e-04	k: 967	n:2910000
CPAMD8   2910000 perm   3866 sec   (753 perm/sec)   p_kst 3.323024e-04   p_cons 9.631945e-01   p_joint 1.151203e-03

Joint ci ratio: 6.779994e-02	ci left: 1.104717e-03	ci right 1.182579e-03	k: 3338	n:2920000
Cons ci ratio: 4.484591e-04	ci left: 9.629735e-01	ci right 9.634058e-01	k: 2812515	n:2920000
KS ci ratio: 1.259076e-01	ci left: 3.109527e-04	ci right 3.530622e-04	k: 968	n:2920000
CPAMD8   2920000 perm   3890 sec   (751 perm/sec)   p_kst 3.315068e-04   p_cons 9.631901e-01   p_joint 1.143151e-03

Joint ci ratio: 6.780008e-02	ci left: 1.100947e-03	ci right 1.178543e-03	k: 3338	n:2930000
Cons ci ratio: 4.477210e-04	ci left: 9.629694e-01	ci right 9.634010e-01	k: 2822134	n:2930000
KS ci ratio: 1.255196e-01	ci left: 3.118749e-04	ci right 3.539694e-04	k: 974	n:2930000
CPAMD8   2930000 perm   3914 sec   (749 perm/sec)   p_kst 3.324232e-04   p_cons 9.631857e-01   p_joint 1.139249e-03

Joint ci ratio: 6.768868e-02	ci left: 1.100880e-03	ci right 1.178339e-03	k: 3349	n:2940000
Cons ci ratio: 4.470015e-04	ci left: 9.629630e-01	ci right 9.633939e-01	k: 2831746	n:2940000
KS ci ratio: 1.251351e-01	ci left: 3.127909e-04	ci right 3.548701e-04	k: 980	n:2940000
CPAMD8   2940000 perm   3937 sec   (747 perm/sec)   p_kst 3.333333e-04   p_cons 9.631789e-01   p_joint 1.139116e-03

Joint ci ratio: 6.749745e-02	ci left: 1.103480e-03	ci right 1.180894e-03	k: 3368	n:2950000
Cons ci ratio: 4.461809e-04	ci left: 9.629733e-01	ci right 9.634034e-01	k: 2841407	n:2950000
KS ci ratio: 1.247541e-01	ci left: 3.137009e-04	ci right 3.557646e-04	k: 986	n:2950000
CPAMD8   2950000 perm   3961 sec   (745 perm/sec)   p_kst 3.342373e-04   p_cons 9.631888e-01   p_joint 1.141695e-03

Joint ci ratio: 6.754778e-02	ci left: 1.098091e-03	ci right 1.175187e-03	k: 3363	n:2960000
Cons ci ratio: 4.454306e-04	ci left: 9.629730e-01	ci right 9.634024e-01	k: 2851037	n:2960000
KS ci ratio: 1.244392e-01	ci left: 3.142777e-04	ci right 3.563045e-04	k: 991	n:2960000
CPAMD8   2960000 perm   3985 sec   (743 perm/sec)   p_kst 3.347973e-04   p_cons 9.631882e-01   p_joint 1.136149e-03

Joint ci ratio: 6.742762e-02	ci left: 1.098366e-03	ci right 1.175339e-03	k: 3375	n:2970000
Cons ci ratio: 4.446608e-04	ci left: 9.629765e-01	ci right 9.634051e-01	k: 2860678	n:2970000
KS ci ratio: 1.240646e-01	ci left: 3.151769e-04	ci right 3.571878e-04	k: 997	n:2970000
CPAMD8   2970000 perm   4009 sec   (741 perm/sec)   p_kst 3.356902e-04   p_cons 9.631912e-01   p_joint 1.136364e-03

Joint ci ratio: 6.779056e-02	ci left: 1.082804e-03	ci right 1.159110e-03	k: 3339	n:2980000
Cons ci ratio: 4.438866e-04	ci left: 9.629812e-01	ci right 9.634091e-01	k: 2870323	n:2980000
KS ci ratio: 1.238167e-01	ci left: 3.154200e-04	ci right 3.573730e-04	k: 1001	n:2980000
CPAMD8   2980000 perm   4036 sec   (738 perm/sec)   p_kst 3.359060e-04   p_cons 9.631956e-01   p_joint 1.120470e-03

Joint ci ratio: 6.779069e-02	ci left: 1.079182e-03	ci right 1.155234e-03	k: 3339	n:2990000
Cons ci ratio: 4.431436e-04	ci left: 9.629816e-01	ci right 9.634088e-01	k: 2879955	n:2990000
KS ci ratio: 1.236933e-01	ci left: 3.150132e-04	ci right 3.568674e-04	k: 1003	n:2990000
CPAMD8   2990000 perm   4060 sec   (736 perm/sec)   p_kst 3.354515e-04   p_cons 9.631957e-01   p_joint 1.116722e-03

Joint ci ratio: 6.823194e-02	ci left: 1.061495e-03	ci right 1.136806e-03	k: 3296	n:3000000
Cons ci ratio: 4.423981e-04	ci left: 9.629830e-01	ci right 9.634094e-01	k: 2889590	n:3000000
KS ci ratio: 1.234476e-01	ci left: 3.152553e-04	ci right 3.570524e-04	k: 1007	n:3000000
CPAMD8   3000000 perm   4085 sec   (734 perm/sec)   p_kst 3.356667e-04   p_cons 9.631967e-01   p_joint 1.098667e-03

Joint ci ratio: 6.812871e-02	ci left: 1.061234e-03	ci right 1.136409e-03	k: 3306	n:3010000
Cons ci ratio: 4.416935e-04	ci left: 9.629784e-01	ci right 9.634041e-01	k: 2899207	n:3010000
KS ci ratio: 1.233254e-01	ci left: 3.148519e-04	ci right 3.565511e-04	k: 1009	n:3010000
CPAMD8   3010000 perm   4110 sec   (732 perm/sec)   p_kst 3.352159e-04   p_cons 9.631917e-01   p_joint 1.098339e-03

Joint ci ratio: 6.800543e-02	ci left: 1.061626e-03	ci right 1.136687e-03	k: 3318	n:3020000
Cons ci ratio: 4.409306e-04	ci left: 9.629837e-01	ci right 9.634088e-01	k: 2908854	n:3020000
KS ci ratio: 1.232035e-01	ci left: 3.144512e-04	ci right 3.560531e-04	k: 1011	n:3020000
CPAMD8   3020000 perm   4136 sec   (730 perm/sec)   p_kst 3.347682e-04   p_cons 9.631967e-01   p_joint 1.098675e-03

Joint ci ratio: 6.806717e-02	ci left: 1.056176e-03	ci right 1.130922e-03	k: 3312	n:3030000
Cons ci ratio: 4.402166e-04	ci left: 9.629818e-01	ci right 9.634061e-01	k: 2918479	n:3030000
KS ci ratio: 1.231427e-01	ci left: 3.137332e-04	ci right 3.552183e-04	k: 1012	n:3030000
CPAMD8   3030000 perm   4161 sec   (728 perm/sec)   p_kst 3.339934e-04   p_cons 9.631944e-01   p_joint 1.093069e-03

Joint ci ratio: 6.790335e-02	ci left: 1.057875e-03	ci right 1.132554e-03	k: 3328	n:3040000
Cons ci ratio: 4.394898e-04	ci left: 9.629825e-01	ci right 9.634061e-01	k: 2928112	n:3040000
KS ci ratio: 1.227796e-01	ci left: 3.146142e-04	ci right 3.560841e-04	k: 1018	n:3040000
CPAMD8   3040000 perm   4187 sec   (726 perm/sec)   p_kst 3.348684e-04   p_cons 9.631947e-01   p_joint 1.094737e-03

Joint ci ratio: 7.070129e-02	ci left: 9.712804e-04	ci right 1.042787e-03	k: 3070	n:3050000
Cons ci ratio: 4.387626e-04	ci left: 9.629838e-01	ci right 9.634068e-01	k: 2937747	n:3050000
KS ci ratio: 1.226593e-01	ci left: 3.142183e-04	ci right 3.555925e-04	k: 1020	n:3050000
CPAMD8   3050000 perm   4212 sec   (724 perm/sec)   p_kst 3.344262e-04   p_cons 9.631957e-01   p_joint 1.006557e-03

Joint ci ratio: 7.084008e-02	ci left: 9.642540e-04	ci right 1.035389e-03	k: 3058	n:3060000
Cons ci ratio: 4.381479e-04	ci left: 9.629675e-01	ci right 9.633898e-01	k: 2947328	n:3060000
KS ci ratio: 1.224197e-01	ci left: 3.144586e-04	ci right 3.557777e-04	k: 1024	n:3060000
CPAMD8   3060000 perm   4238 sec   (722 perm/sec)   p_kst 3.346405e-04   p_cons 9.631791e-01   p_joint 9.993464e-04

Joint ci ratio: 7.121403e-02	ci left: 9.508745e-04	ci right 1.021408e-03	k: 3026	n:3070000
Cons ci ratio: 4.373731e-04	ci left: 9.629777e-01	ci right 9.633993e-01	k: 2956990	n:3070000
KS ci ratio: 1.221815e-01	ci left: 3.146973e-04	ci right 3.559616e-04	k: 1028	n:3070000
CPAMD8   3070000 perm   4264 sec   (720 perm/sec)   p_kst 3.348534e-04   p_cons 9.631889e-01   p_joint 9.856678e-04

Joint ci ratio: 7.113187e-02	ci left: 9.500195e-04	ci right 1.020405e-03	k: 3033	n:3080000
Cons ci ratio: 4.366442e-04	ci left: 9.629810e-01	ci right 9.634019e-01	k: 2966631	n:3080000
KS ci ratio: 1.220038e-01	ci left: 3.146199e-04	ci right 3.558096e-04	k: 1031	n:3080000
CPAMD8   3080000 perm   4289 sec   (718 perm/sec)   p_kst 3.347403e-04   p_cons 9.631919e-01   p_joint 9.847403e-04

Joint ci ratio: 7.106168e-02	ci left: 9.488522e-04	ci right 1.019079e-03	k: 3039	n:3090000
Cons ci ratio: 4.359051e-04	ci left: 9.629866e-01	ci right 9.634067e-01	k: 2976279	n:3090000
KS ci ratio: 1.218858e-01	ci left: 3.142292e-04	ci right 3.553251e-04	k: 1033	n:3090000
CPAMD8   3090000 perm   4314 sec   (716 perm/sec)   p_kst 3.343042e-04   p_cons 9.631971e-01   p_joint 9.834951e-04

Joint ci ratio: 7.115557e-02	ci left: 9.432566e-04	ci right 1.013165e-03	k: 3031	n:3100000
Cons ci ratio: 4.351856e-04	ci left: 9.629895e-01	ci right 9.634090e-01	k: 2985919	n:3100000
KS ci ratio: 1.217681e-01	ci left: 3.138410e-04	ci right 3.548437e-04	k: 1035	n:3100000
CPAMD8   3100000 perm   4339 sec   (714 perm/sec)   p_kst 3.338710e-04   p_cons 9.631997e-01   p_joint 9.777419e-04

Joint ci ratio: 7.102683e-02	ci left: 9.436977e-04	ci right 1.013507e-03	k: 3042	n:3110000
Cons ci ratio: 4.344991e-04	ci left: 9.629876e-01	ci right 9.634064e-01	k: 2995544	n:3110000
KS ci ratio: 1.215337e-01	ci left: 3.140789e-04	ci right 3.550280e-04	k: 1039	n:3110000
CPAMD8   3110000 perm   4364 sec   (713 perm/sec)   p_kst 3.340836e-04   p_cons 9.631974e-01   p_joint 9.781350e-04

Joint ci ratio: 7.096861e-02	ci left: 9.422471e-04	ci right 1.011890e-03	k: 3047	n:3120000
Cons ci ratio: 4.337748e-04	ci left: 9.629924e-01	ci right 9.634106e-01	k: 3005190	n:3120000
KS ci ratio: 1.214170e-01	ci left: 3.136938e-04	ci right 3.545506e-04	k: 1041	n:3120000
CPAMD8   3120000 perm   4389 sec   (711 perm/sec)   p_kst 3.336538e-04   p_cons 9.632019e-01   p_joint 9.766026e-04

Joint ci ratio: 7.081771e-02	ci left: 9.433165e-04	ci right 1.012884e-03	k: 3060	n:3130000
Cons ci ratio: 4.330735e-04	ci left: 9.629940e-01	ci right 9.634115e-01	k: 3014826	n:3130000
KS ci ratio: 1.210689e-01	ci left: 3.145504e-04	ci right 3.553929e-04	k: 1047	n:3130000
CPAMD8   3130000 perm   4415 sec   (709 perm/sec)   p_kst 3.345048e-04   p_cons 9.632032e-01   p_joint 9.776358e-04

Joint ci ratio: 7.071384e-02	ci left: 9.431278e-04	ci right 1.012575e-03	k: 3069	n:3140000
Cons ci ratio: 4.323698e-04	ci left: 9.629966e-01	ci right 9.634134e-01	k: 3024465	n:3140000
KS ci ratio: 1.208960e-01	ci left: 3.144752e-04	ci right 3.552454e-04	k: 1050	n:3140000
CPAMD8   3140000 perm   4440 sec   (707 perm/sec)   p_kst 3.343949e-04   p_cons 9.632054e-01   p_joint 9.773885e-04

Joint ci ratio: 7.062190e-02	ci left: 9.426286e-04	ci right 1.011945e-03	k: 3077	n:3150000
Cons ci ratio: 4.316850e-04	ci left: 9.629966e-01	ci right 9.634127e-01	k: 3034096	n:3150000
KS ci ratio: 1.206666e-01	ci left: 3.147083e-04	ci right 3.554258e-04	k: 1054	n:3150000
CPAMD8   3150000 perm   4466 sec   (705 perm/sec)   p_kst 3.346032e-04   p_cons 9.632051e-01   p_joint 9.768254e-04

Joint ci ratio: 7.049603e-02	ci left: 9.430652e-04	ci right 1.012285e-03	k: 3088	n:3160000
Cons ci ratio: 4.309245e-04	ci left: 9.630096e-01	ci right 9.634250e-01	k: 3043768	n:3160000
KS ci ratio: 1.206667e-01	ci left: 3.137124e-04	ci right 3.543010e-04	k: 1054	n:3160000
CPAMD8   3160000 perm   4491 sec   (704 perm/sec)   p_kst 3.335443e-04   p_cons 9.632177e-01   p_joint 9.772152e-04

Joint ci ratio: 7.033677e-02	ci left: 9.444289e-04	ci right 1.013586e-03	k: 3102	n:3170000
Cons ci ratio: 4.302274e-04	ci left: 9.630127e-01	ci right 9.634274e-01	k: 3053409	n:3170000
KS ci ratio: 1.203249e-01	ci left: 3.145585e-04	ci right 3.551331e-04	k: 1060	n:3170000
CPAMD8   3170000 perm   4517 sec   (702 perm/sec)   p_kst 3.343849e-04   p_cons 9.632205e-01   p_joint 9.785489e-04

Joint ci ratio: 7.105097e-02	ci left: 9.223064e-04	ci right 9.905573e-04	k: 3040	n:3180000
Cons ci ratio: 4.295546e-04	ci left: 9.630124e-01	ci right 9.634264e-01	k: 3063039	n:3180000
KS ci ratio: 1.200424e-01	ci left: 3.150943e-04	ci right 3.556359e-04	k: 1065	n:3180000
CPAMD8   3180000 perm   4544 sec   (700 perm/sec)   p_kst 3.349057e-04   p_cons 9.632198e-01   p_joint 9.559748e-04

Joint ci ratio: 7.088794e-02	ci left: 9.237260e-04	ci right 9.919187e-04	k: 3054	n:3190000
Cons ci ratio: 4.288375e-04	ci left: 9.630199e-01	ci right 9.634332e-01	k: 3072694	n:3190000
KS ci ratio: 1.198178e-01	ci left: 3.153229e-04	ci right 3.558126e-04	k: 1069	n:3190000
CPAMD8   3190000 perm   4570 sec   (698 perm/sec)   p_kst 3.351097e-04   p_cons 9.632270e-01   p_joint 9.573668e-04

Joint ci ratio: 7.074910e-02	ci left: 9.245229e-04	ci right 9.926353e-04	k: 3066	n:3200000
Cons ci ratio: 4.281788e-04	ci left: 9.630182e-01	ci right 9.634309e-01	k: 3082320	n:3200000
KS ci ratio: 1.196502e-01	ci left: 3.152469e-04	ci right 3.556662e-04	k: 1072	n:3200000
CPAMD8   3200000 perm   4596 sec   (696 perm/sec)   p_kst 3.350000e-04   p_cons 9.632250e-01   p_joint 9.581250e-04

Joint ci ratio: 7.063403e-02	ci left: 9.247030e-04	ci right 9.927133e-04	k: 3076	n:3210000
Cons ci ratio: 4.274873e-04	ci left: 9.630225e-01	ci right 9.634346e-01	k: 3091965	n:3210000
KS ci ratio: 1.194278e-01	ci left: 3.154737e-04	ci right 3.558416e-04	k: 1076	n:3210000
CPAMD8   3210000 perm   4622 sec   (695 perm/sec)   p_kst 3.352025e-04   p_cons 9.632290e-01   p_joint 9.582555e-04

Joint ci ratio: 7.053097e-02	ci left: 9.245770e-04	ci right 9.924747e-04	k: 3085	n:3220000
Cons ci ratio: 4.268179e-04	ci left: 9.630237e-01	ci right 9.634351e-01	k: 3101600	n:3220000
KS ci ratio: 1.193170e-01	ci left: 3.150965e-04	ci right 3.553762e-04	k: 1078	n:3220000
CPAMD8   3220000 perm   4648 sec   (693 perm/sec)   p_kst 3.347826e-04   p_cons 9.632298e-01   p_joint 9.580745e-04

Joint ci ratio: 7.042835e-02	ci left: 9.244518e-04	ci right 9.922375e-04	k: 3094	n:3230000
Cons ci ratio: 4.261926e-04	ci left: 9.630180e-01	ci right 9.634288e-01	k: 3111213	n:3230000
KS ci ratio: 1.192066e-01	ci left: 3.147217e-04	ci right 3.549136e-04	k: 1080	n:3230000
CPAMD8   3230000 perm   4674 sec   (691 perm/sec)   p_kst 3.343653e-04   p_cons 9.632238e-01   p_joint 9.578947e-04

Joint ci ratio: 7.090008e-02	ci left: 9.091675e-04	ci right 9.762974e-04	k: 3053	n:3240000
Cons ci ratio: 4.255441e-04	ci left: 9.630167e-01	ci right 9.634269e-01	k: 3120840	n:3240000
KS ci ratio: 1.190416e-01	ci left: 3.146487e-04	ci right 3.547717e-04	k: 1083	n:3240000
CPAMD8   3240000 perm   4700 sec   (689 perm/sec)   p_kst 3.342593e-04   p_cons 9.632222e-01   p_joint 9.422840e-04

Joint ci ratio: 7.084216e-02	ci left: 9.078813e-04	ci right 9.748592e-04	k: 3058	n:3250000
Cons ci ratio: 4.249263e-04	ci left: 9.630108e-01	ci right 9.634204e-01	k: 3130452	n:3250000
KS ci ratio: 1.188772e-01	ci left: 3.145762e-04	ci right 3.546306e-04	k: 1086	n:3250000
CPAMD8   3250000 perm   4726 sec   (688 perm/sec)   p_kst 3.341538e-04   p_cons 9.632160e-01   p_joint 9.409231e-04

Joint ci ratio: 7.076127e-02	ci left: 9.072056e-04	ci right 9.740541e-04	k: 3065	n:3260000
Cons ci ratio: 4.243239e-04	ci left: 9.630028e-01	ci right 9.634118e-01	k: 3140057	n:3260000
KS ci ratio: 1.188226e-01	ci left: 3.139088e-04	ci right 3.538587e-04	k: 1087	n:3260000
CPAMD8   3260000 perm   4753 sec   (686 perm/sec)   p_kst 3.334356e-04   p_cons 9.632077e-01   p_joint 9.401840e-04

Joint ci ratio: 7.099352e-02	ci left: 8.984233e-04	ci right 9.648509e-04	k: 3045	n:3270000
Cons ci ratio: 4.237241e-04	ci left: 9.629948e-01	ci right 9.634032e-01	k: 3149662	n:3270000
KS ci ratio: 1.185505e-01	ci left: 3.144325e-04	ci right 3.543509e-04	k: 1092	n:3270000
CPAMD8   3270000 perm   4780 sec   (684 perm/sec)   p_kst 3.339450e-04   p_cons 9.631994e-01   p_joint 9.311927e-04

Joint ci ratio: 7.091211e-02	ci left: 8.977805e-04	ci right 9.640813e-04	k: 3052	n:3280000
Cons ci ratio: 4.230467e-04	ci left: 9.630003e-01	ci right 9.634081e-01	k: 3159311	n:3280000
KS ci ratio: 1.184422e-01	ci left: 3.140656e-04	ci right 3.538984e-04	k: 1094	n:3280000
CPAMD8   3280000 perm   4807 sec   (682 perm/sec)   p_kst 3.335366e-04   p_cons 9.632046e-01   p_joint 9.304878e-04

Joint ci ratio: 7.079625e-02	ci left: 8.980373e-04	ci right 9.642443e-04	k: 3062	n:3290000
Cons ci ratio: 4.223961e-04	ci left: 9.630018e-01	ci right 9.634089e-01	k: 3168947	n:3290000
KS ci ratio: 1.180653e-01	ci left: 3.151757e-04	ci right 3.550133e-04	k: 1101	n:3290000
CPAMD8   3290000 perm   4834 sec   (681 perm/sec)   p_kst 3.346505e-04   p_cons 9.632058e-01   p_joint 9.306991e-04

Joint ci ratio: 7.062347e-02	ci left: 8.997811e-04	ci right 9.659481e-04	k: 3077	n:3300000
Cons ci ratio: 4.217449e-04	ci left: 9.630039e-01	ci right 9.634104e-01	k: 3178585	n:3300000
KS ci ratio: 1.177984e-01	ci left: 3.156911e-04	ci right 3.554973e-04	k: 1106	n:3300000
CPAMD8   3300000 perm   4860 sec   (679 perm/sec)   p_kst 3.351515e-04   p_cons 9.632076e-01   p_joint 9.324242e-04

Joint ci ratio: 7.048618e-02	ci left: 9.006242e-04	ci right 9.667192e-04	k: 3089	n:3310000
Cons ci ratio: 4.210752e-04	ci left: 9.630096e-01	ci right 9.634155e-01	k: 3188235	n:3310000
KS ci ratio: 1.175861e-01	ci left: 3.159102e-04	ci right 3.556673e-04	k: 1110	n:3310000
CPAMD8   3310000 perm   4886 sec   (677 perm/sec)   p_kst 3.353474e-04   p_cons 9.632130e-01   p_joint 9.332326e-04

Joint ci ratio: 7.062367e-02	ci left: 8.943607e-04	ci right 9.601293e-04	k: 3077	n:3320000
Cons ci ratio: 4.204694e-04	ci left: 9.630051e-01	ci right 9.634104e-01	k: 3197851	n:3320000
KS ci ratio: 1.174805e-01	ci left: 3.155434e-04	ci right 3.552162e-04	k: 1112	n:3320000
CPAMD8   3320000 perm   4913 sec   (676 perm/sec)   p_kst 3.349398e-04   p_cons 9.632081e-01   p_joint 9.268072e-04

Joint ci ratio: 7.055497e-02	ci left: 8.934449e-04	ci right 9.590796e-04	k: 3083	n:3330000
Cons ci ratio: 4.198626e-04	ci left: 9.630011e-01	ci right 9.634059e-01	k: 3207469	n:3330000
KS ci ratio: 1.174805e-01	ci left: 3.145958e-04	ci right 3.541494e-04	k: 1112	n:3330000
CPAMD8   3330000 perm   4939 sec   (674 perm/sec)   p_kst 3.339339e-04   p_cons 9.632039e-01   p_joint 9.258258e-04

Joint ci ratio: 7.044085e-02	ci left: 8.937111e-04	ci right 9.592549e-04	k: 3093	n:3340000
Cons ci ratio: 4.192567e-04	ci left: 9.629975e-01	ci right 9.634017e-01	k: 3217088	n:3340000
KS ci ratio: 1.173751e-01	ci left: 3.142351e-04	ci right 3.537055e-04	k: 1114	n:3340000
CPAMD8   3340000 perm   4966 sec   (673 perm/sec)   p_kst 3.335329e-04   p_cons 9.632000e-01   p_joint 9.260479e-04

Joint ci ratio: 7.030462e-02	ci left: 8.945624e-04	ci right 9.600365e-04	k: 3105	n:3350000
Cons ci ratio: 4.186093e-04	ci left: 9.630014e-01	ci right 9.634049e-01	k: 3226732	n:3350000
KS ci ratio: 1.171651e-01	ci left: 3.144561e-04	ci right 3.538787e-04	k: 1118	n:3350000
CPAMD8   3350000 perm   4992 sec   (671 perm/sec)   p_kst 3.337313e-04   p_cons 9.632036e-01   p_joint 9.268657e-04

Joint ci ratio: 7.015791e-02	ci left: 8.957011e-04	ci right 9.611162e-04	k: 3118	n:3360000
Cons ci ratio: 4.179649e-04	ci left: 9.630053e-01	ci right 9.634082e-01	k: 3236376	n:3360000
KS ci ratio: 1.167485e-01	ci left: 3.158315e-04	ci right 3.552761e-04	k: 1126	n:3360000
CPAMD8   3360000 perm   5019 sec   (669 perm/sec)   p_kst 3.351190e-04   p_cons 9.632071e-01   p_joint 9.279762e-04

Joint ci ratio: 7.016927e-02	ci left: 8.927517e-04	ci right 9.579624e-04	k: 3117	n:3370000
Cons ci ratio: 4.173182e-04	ci left: 9.630100e-01	ci right 9.634123e-01	k: 3246023	n:3370000
KS ci ratio: 1.165418e-01	ci left: 3.160466e-04	ci right 3.554434e-04	k: 1130	n:3370000
CPAMD8   3370000 perm   5046 sec   (668 perm/sec)   p_kst 3.353116e-04   p_cons 9.632116e-01   p_joint 9.249258e-04

Joint ci ratio: 7.004580e-02	ci left: 8.933078e-04	ci right 9.584396e-04	k: 3128	n:3380000
Cons ci ratio: 4.167372e-04	ci left: 9.630041e-01	ci right 9.634058e-01	k: 3255634	n:3380000
KS ci ratio: 1.163363e-01	ci left: 3.162606e-04	ci right 3.556097e-04	k: 1134	n:3380000
CPAMD8   3380000 perm   5073 sec   (666 perm/sec)   p_kst 3.355030e-04   p_cons 9.632053e-01   p_joint 9.254438e-04

Joint ci ratio: 6.987845e-02	ci left: 8.950201e-04	ci right 9.601145e-04	k: 3143	n:3390000
Cons ci ratio: 4.161222e-04	ci left: 9.630044e-01	ci right 9.634055e-01	k: 3265266	n:3390000
KS ci ratio: 1.162339e-01	ci left: 3.159004e-04	ci right 3.551678e-04	k: 1136	n:3390000
CPAMD8   3390000 perm   5100 sec   (665 perm/sec)   p_kst 3.351032e-04   p_cons 9.632053e-01   p_joint 9.271386e-04

Joint ci ratio: 6.626389e-02	ci left: 9.941578e-04	ci right 1.062579e-03	k: 3495	n:3400000
Cons ci ratio: 4.155409e-04	ci left: 9.629993e-01	ci right 9.633999e-01	k: 3274880	n:3400000
KS ci ratio: 1.159792e-01	ci left: 3.163992e-04	ci right 3.556364e-04	k: 1141	n:3400000
CPAMD8   3400000 perm   5127 sec   (663 perm/sec)   p_kst 3.355882e-04   p_cons 9.632000e-01   p_joint 1.027941e-03

Joint ci ratio: 6.613157e-02	ci left: 9.952800e-04	ci right 1.063636e-03	k: 3509	n:3410000
Cons ci ratio: 4.149414e-04	ci left: 9.629979e-01	ci right 9.633978e-01	k: 3284506	n:3410000
KS ci ratio: 1.157766e-01	ci left: 3.166104e-04	ci right 3.558005e-04	k: 1145	n:3410000
CPAMD8   3410000 perm   5155 sec   (661 perm/sec)   p_kst 3.357771e-04   p_cons 9.631982e-01   p_joint 1.029032e-03

Joint ci ratio: 6.607516e-02	ci left: 9.940952e-04	ci right 1.062310e-03	k: 3515	n:3420000
Cons ci ratio: 4.142677e-04	ci left: 9.630096e-01	ci right 9.634089e-01	k: 3294177	n:3420000
KS ci ratio: 1.156757e-01	ci left: 3.162525e-04	ci right 3.553619e-04	k: 1147	n:3420000
CPAMD8   3420000 perm   5183 sec   (660 perm/sec)   p_kst 3.353801e-04   p_cons 9.632096e-01   p_joint 1.027778e-03

Joint ci ratio: 6.593462e-02	ci left: 9.954980e-04	ci right 1.063658e-03	k: 3530	n:3430000
Cons ci ratio: 4.136312e-04	ci left: 9.630154e-01	ci right 9.634141e-01	k: 3303828	n:3430000
KS ci ratio: 1.154246e-01	ci left: 3.167461e-04	ci right 3.558257e-04	k: 1152	n:3430000
CPAMD8   3430000 perm   5211 sec   (658 perm/sec)   p_kst 3.358601e-04   p_cons 9.632152e-01   p_joint 1.029155e-03

Joint ci ratio: 6.583215e-02	ci left: 9.957491e-04	ci right 1.063816e-03	k: 3541	n:3440000
Cons ci ratio: 4.130196e-04	ci left: 9.630174e-01	ci right 9.634155e-01	k: 3313466	n:3440000
KS ci ratio: 1.151751e-01	ci left: 3.172369e-04	ci right 3.562867e-04	k: 1157	n:3440000
CPAMD8   3440000 perm   5240 sec   (657 perm/sec)   p_kst 3.363372e-04   p_cons 9.632169e-01   p_joint 1.029360e-03

Joint ci ratio: 6.575795e-02	ci left: 9.951436e-04	ci right 1.063090e-03	k: 3549	n:3450000
Cons ci ratio: 4.124040e-04	ci left: 9.630206e-01	ci right 9.634181e-01	k: 3323108	n:3450000
KS ci ratio: 1.149767e-01	ci left: 3.174434e-04	ci right 3.564467e-04	k: 1161	n:3450000
CPAMD8   3450000 perm   5268 sec   (655 perm/sec)   p_kst 3.365217e-04   p_cons 9.632197e-01   p_joint 1.028696e-03

Joint ci ratio: 6.563785e-02	ci left: 9.959629e-04	ci right 1.063836e-03	k: 3562	n:3460000
Cons ci ratio: 4.118231e-04	ci left: 9.630182e-01	ci right 9.634151e-01	k: 3332731	n:3460000
KS ci ratio: 1.146809e-01	ci left: 3.182102e-04	ci right 3.572004e-04	k: 1167	n:3460000
CPAMD8   3460000 perm   5296 sec   (653 perm/sec)   p_kst 3.372832e-04   p_cons 9.632171e-01   p_joint 1.029480e-03

Joint ci ratio: 6.554594e-02	ci left: 9.959273e-04	ci right 1.063699e-03	k: 3572	n:3470000
Cons ci ratio: 4.111810e-04	ci left: 9.630268e-01	ci right 9.634231e-01	k: 3342392	n:3470000
KS ci ratio: 1.144362e-01	ci left: 3.186928e-04	ci right 3.576532e-04	k: 1172	n:3470000
CPAMD8   3470000 perm   5324 sec   (652 perm/sec)   p_kst 3.377522e-04   p_cons 9.632254e-01   p_joint 1.029395e-03

Joint ci ratio: 6.622676e-02	ci left: 9.724336e-04	ci right 1.039321e-03	k: 3499	n:3480000
Cons ci ratio: 4.105336e-04	ci left: 9.630368e-01	ci right 9.634325e-01	k: 3352058	n:3480000
KS ci ratio: 1.141931e-01	ci left: 3.191728e-04	ci right 3.581033e-04	k: 1177	n:3480000
CPAMD8   3480000 perm   5352 sec   (650 perm/sec)   p_kst 3.382184e-04   p_cons 9.632351e-01   p_joint 1.005460e-03

Joint ci ratio: 6.609466e-02	ci left: 9.735924e-04	ci right 1.040420e-03	k: 3513	n:3490000
Cons ci ratio: 4.100086e-04	ci left: 9.630261e-01	ci right 9.634213e-01	k: 3361652	n:3490000
KS ci ratio: 1.138072e-01	ci left: 3.204851e-04	ci right 3.594348e-04	k: 1185	n:3490000
CPAMD8   3490000 perm   5380 sec   (649 perm/sec)   p_kst 3.395415e-04   p_cons 9.632241e-01   p_joint 1.006590e-03

Joint ci ratio: 6.599144e-02	ci left: 9.739017e-04	ci right 1.040643e-03	k: 3524	n:3500000
Cons ci ratio: 4.093618e-04	ci left: 9.630369e-01	ci right 9.634315e-01	k: 3371321	n:3500000
KS ci ratio: 1.136636e-01	ci left: 3.204022e-04	ci right 3.592894e-04	k: 1188	n:3500000
CPAMD8   3500000 perm   5407 sec   (647 perm/sec)   p_kst 3.394286e-04   p_cons 9.632346e-01   p_joint 1.006857e-03

Joint ci ratio: 6.587939e-02	ci left: 9.744895e-04	ci right 1.041153e-03	k: 3536	n:3510000
Cons ci ratio: 4.087952e-04	ci left: 9.630342e-01	ci right 9.634283e-01	k: 3380943	n:3510000
KS ci ratio: 1.134253e-01	ci left: 3.208734e-04	ci right 3.597307e-04	k: 1193	n:3510000
CPAMD8   3510000 perm   5435 sec   (646 perm/sec)   p_kst 3.398860e-04   p_cons 9.632316e-01   p_joint 1.007407e-03

Joint ci ratio: 6.577717e-02	ci left: 9.747946e-04	ci right 1.041372e-03	k: 3547	n:3520000
Cons ci ratio: 4.081655e-04	ci left: 9.630430e-01	ci right 9.634364e-01	k: 3390605	n:3520000
KS ci ratio: 1.132831e-01	ci left: 3.207900e-04	ci right 3.595852e-04	k: 1196	n:3520000
CPAMD8   3520000 perm   5464 sec   (644 perm/sec)   p_kst 3.397727e-04   p_cons 9.632401e-01   p_joint 1.007670e-03

Joint ci ratio: 6.568467e-02	ci left: 9.748194e-04	ci right 1.041301e-03	k: 3557	n:3530000
Cons ci ratio: 4.075795e-04	ci left: 9.630445e-01	ci right 9.634374e-01	k: 3400242	n:3530000
KS ci ratio: 1.130943e-01	ci left: 3.209823e-04	ci right 3.597317e-04	k: 1200	n:3530000
CPAMD8   3530000 perm   5492 sec   (643 perm/sec)   p_kst 3.399433e-04   p_cons 9.632414e-01   p_joint 1.007649e-03

Joint ci ratio: 6.554661e-02	ci left: 9.762335e-04	ci right 1.042666e-03	k: 3572	n:3540000
Cons ci ratio: 4.070122e-04	ci left: 9.630433e-01	ci right 9.634356e-01	k: 3409869	n:3540000
KS ci ratio: 1.130002e-01	ci left: 3.206246e-04	ci right 3.592965e-04	k: 1202	n:3540000
CPAMD8   3540000 perm   5521 sec   (641 perm/sec)   p_kst 3.395480e-04   p_cons 9.632398e-01   p_joint 1.009040e-03

Joint ci ratio: 6.546422e-02	ci left: 9.759772e-04	ci right 1.042306e-03	k: 3581	n:3550000
Cons ci ratio: 4.064181e-04	ci left: 9.630471e-01	ci right 9.634389e-01	k: 3419514	n:3550000
KS ci ratio: 1.129065e-01	ci left: 3.202689e-04	ci right 3.588637e-04	k: 1204	n:3550000
CPAMD8   3550000 perm   5549 sec   (640 perm/sec)   p_kst 3.391549e-04   p_cons 9.632434e-01   p_joint 1.008732e-03

Joint ci ratio: 6.535482e-02	ci left: 9.765514e-04	ci right 1.042804e-03	k: 3593	n:3560000
Cons ci ratio: 4.058589e-04	ci left: 9.630453e-01	ci right 9.634365e-01	k: 3429139	n:3560000
KS ci ratio: 1.127662e-01	ci left: 3.201881e-04	ci right 3.587221e-04	k: 1207	n:3560000
CPAMD8   3560000 perm   5578 sec   (638 perm/sec)   p_kst 3.390449e-04   p_cons 9.632413e-01   p_joint 1.009270e-03

Joint ci ratio: 6.527316e-02	ci left: 9.762958e-04	ci right 1.042445e-03	k: 3602	n:3570000
Cons ci ratio: 4.053356e-04	ci left: 9.630376e-01	ci right 9.634283e-01	k: 3438743	n:3570000
KS ci ratio: 1.126264e-01	ci left: 3.201079e-04	ci right 3.585813e-04	k: 1210	n:3570000
CPAMD8   3570000 perm   5607 sec   (637 perm/sec)   p_kst 3.389356e-04   p_cons 9.632333e-01   p_joint 1.008964e-03

Joint ci ratio: 6.517374e-02	ci left: 9.765912e-04	ci right 1.042656e-03	k: 3613	n:3580000
Cons ci ratio: 4.047489e-04	ci left: 9.630414e-01	ci right 9.634316e-01	k: 3448388	n:3580000
KS ci ratio: 1.125800e-01	ci left: 3.194852e-04	ci right 3.578669e-04	k: 1211	n:3580000
CPAMD8   3580000 perm   5635 sec   (635 perm/sec)   p_kst 3.382682e-04   p_cons 9.632369e-01   p_joint 1.009218e-03

Joint ci ratio: 6.509274e-02	ci left: 9.763371e-04	ci right 1.042299e-03	k: 3622	n:3590000
Cons ci ratio: 4.041965e-04	ci left: 9.630396e-01	ci right 9.634292e-01	k: 3458013	n:3590000
KS ci ratio: 1.123947e-01	ci left: 3.196781e-04	ci right 3.580156e-04	k: 1215	n:3590000
CPAMD8   3590000 perm   5665 sec   (634 perm/sec)   p_kst 3.384401e-04   p_cons 9.632348e-01   p_joint 1.008914e-03

Joint ci ratio: 6.498520e-02	ci left: 9.769041e-04	ci right 1.042792e-03	k: 3634	n:3600000
Cons ci ratio: 4.036669e-04	ci left: 9.630342e-01	ci right 9.634233e-01	k: 3467625	n:3600000
KS ci ratio: 1.121183e-01	ci left: 3.204100e-04	ci right 3.587345e-04	k: 1221	n:3600000
CPAMD8   3600000 perm   5694 sec   (632 perm/sec)   p_kst 3.391667e-04   p_cons 9.632292e-01   p_joint 1.009444e-03

Joint ci ratio: 6.490491e-02	ci left: 9.766506e-04	ci right 1.042437e-03	k: 3643	n:3610000
Cons ci ratio: 4.030558e-04	ci left: 9.630436e-01	ci right 9.634321e-01	k: 3477290	n:3610000
KS ci ratio: 1.119353e-01	ci left: 3.205994e-04	ci right 3.588798e-04	k: 1225	n:3610000
CPAMD8   3610000 perm   5722 sec   (631 perm/sec)   p_kst 3.393352e-04   p_cons 9.632382e-01   p_joint 1.009141e-03

Joint ci ratio: 6.484268e-02	ci left: 9.758550e-04	ci right 1.041522e-03	k: 3650	n:3620000
Cons ci ratio: 4.024711e-04	ci left: 9.630488e-01	ci right 9.634367e-01	k: 3486940	n:3620000
KS ci ratio: 1.117986e-01	ci left: 3.205193e-04	ci right 3.587404e-04	k: 1228	n:3620000
CPAMD8   3620000 perm   5751 sec   (629 perm/sec)   p_kst 3.392265e-04   p_cons 9.632431e-01   p_joint 1.008287e-03

Joint ci ratio: 6.674552e-02	ci left: 9.176208e-04	ci right 9.812512e-04	k: 3445	n:3630000
Cons ci ratio: 4.019139e-04	ci left: 9.630495e-01	ci right 9.634369e-01	k: 3496574	n:3630000
KS ci ratio: 1.117078e-01	ci left: 3.201719e-04	ci right 3.583185e-04	k: 1230	n:3630000
CPAMD8   3630000 perm   5781 sec   (628 perm/sec)   p_kst 3.388430e-04   p_cons 9.632435e-01   p_joint 9.490358e-04

Joint ci ratio: 6.666819e-02	ci left: 9.172610e-04	ci right 9.807899e-04	k: 3453	n:3640000
Cons ci ratio: 4.013683e-04	ci left: 9.630485e-01	ci right 9.634354e-01	k: 3506202	n:3640000
KS ci ratio: 1.116171e-01	ci left: 3.198264e-04	ci right 3.578989e-04	k: 1232	n:3640000
CPAMD8   3640000 perm   5811 sec   (626 perm/sec)   p_kst 3.384615e-04   p_cons 9.632423e-01   p_joint 9.486264e-04

Joint ci ratio: 6.659113e-02	ci left: 9.169032e-04	ci right 9.803311e-04	k: 3461	n:3650000
Cons ci ratio: 4.008327e-04	ci left: 9.630462e-01	ci right 9.634325e-01	k: 3515825	n:3650000
KS ci ratio: 1.114816e-01	ci left: 3.197492e-04	ci right 3.577632e-04	k: 1235	n:3650000
CPAMD8   3650000 perm   5841 sec   (625 perm/sec)   p_kst 3.383562e-04   p_cons 9.632397e-01   p_joint 9.482192e-04

Joint ci ratio: 6.652394e-02	ci left: 9.162788e-04	ci right 9.795970e-04	k: 3468	n:3660000
Cons ci ratio: 4.003039e-04	ci left: 9.630430e-01	ci right 9.634289e-01	k: 3525445	n:3660000
KS ci ratio: 1.113016e-01	ci left: 3.199380e-04	ci right 3.579090e-04	k: 1239	n:3660000
CPAMD8   3660000 perm   5871 sec   (623 perm/sec)   p_kst 3.385246e-04   p_cons 9.632363e-01   p_joint 9.475410e-04

Joint ci ratio: 6.697974e-02	ci left: 9.011891e-04	ci right 9.639078e-04	k: 3421	n:3670000
Cons ci ratio: 3.997495e-04	ci left: 9.630448e-01	ci right 9.634302e-01	k: 3535083	n:3670000
KS ci ratio: 1.112568e-01	ci left: 3.193311e-04	ci right 3.572138e-04	k: 1240	n:3670000
CPAMD8   3670000 perm   5901 sec   (622 perm/sec)   p_kst 3.378747e-04   p_cons 9.632379e-01   p_joint 9.321526e-04

Joint ci ratio: 6.718648e-02	ci left: 8.931293e-04	ci right 9.554864e-04	k: 3400	n:3680000
Cons ci ratio: 3.991422e-04	ci left: 9.630565e-01	ci right 9.634412e-01	k: 3544757	n:3680000
KS ci ratio: 1.112121e-01	ci left: 3.187276e-04	ci right 3.565225e-04	k: 1241	n:3680000
CPAMD8   3680000 perm   5931 sec   (620 perm/sec)   p_kst 3.372283e-04   p_cons 9.632492e-01   p_joint 9.239130e-04

Joint ci ratio: 6.708792e-02	ci left: 8.933734e-04	ci right 9.556525e-04	k: 3410	n:3690000
Cons ci ratio: 3.985880e-04	ci left: 9.630590e-01	ci right 9.634432e-01	k: 3554398	n:3690000
KS ci ratio: 1.110780e-01	ci left: 3.186542e-04	ci right 3.563919e-04	k: 1244	n:3690000
CPAMD8   3690000 perm   5960 sec   (619 perm/sec)   p_kst 3.371274e-04   p_cons 9.632515e-01   p_joint 9.241192e-04

Joint ci ratio: 6.698979e-02	ci left: 8.936163e-04	ci right 9.558177e-04	k: 3420	n:3700000
Cons ci ratio: 3.980301e-04	ci left: 9.630627e-01	ci right 9.634463e-01	k: 3564043	n:3700000
KS ci ratio: 1.109000e-01	ci left: 3.188440e-04	ci right 3.565397e-04	k: 1248	n:3700000
CPAMD8   3700000 perm   5991 sec   (618 perm/sec)   p_kst 3.372973e-04   p_cons 9.632549e-01   p_joint 9.243243e-04

Joint ci ratio: 6.776759e-02	ci left: 8.705372e-04	ci right 9.318633e-04	k: 3342	n:3710000
Cons ci ratio: 3.975259e-04	ci left: 9.630571e-01	ci right 9.634403e-01	k: 3573654	n:3710000
KS ci ratio: 1.108113e-01	ci left: 3.185088e-04	ci right 3.561327e-04	k: 1250	n:3710000
CPAMD8   3710000 perm   6021 sec   (616 perm/sec)   p_kst 3.369272e-04   p_cons 9.632491e-01   p_joint 9.008086e-04

Joint ci ratio: 6.762609e-02	ci left: 8.718968e-04	ci right 9.331854e-04	k: 3356	n:3720000
Cons ci ratio: 3.969829e-04	ci left: 9.630588e-01	ci right 9.634415e-01	k: 3583292	n:3720000
KS ci ratio: 1.104586e-01	ci left: 3.197436e-04	ci right 3.573854e-04	k: 1258	n:3720000
CPAMD8   3720000 perm   6051 sec   (615 perm/sec)   p_kst 3.381720e-04   p_cons 9.632505e-01   p_joint 9.021505e-04

Joint ci ratio: 6.751555e-02	ci left: 8.724585e-04	ci right 9.336825e-04	k: 3367	n:3730000
Cons ci ratio: 3.964226e-04	ci left: 9.630641e-01	ci right 9.634462e-01	k: 3592943	n:3730000
KS ci ratio: 1.102399e-01	ci left: 3.201899e-04	ci right 3.578047e-04	k: 1263	n:3730000
CPAMD8   3730000 perm   6082 sec   (613 perm/sec)   p_kst 3.386059e-04   p_cons 9.632555e-01   p_joint 9.026810e-04

Joint ci ratio: 6.849980e-02	ci left: 8.448934e-04	ci right 9.050816e-04	k: 3271	n:3740000
Cons ci ratio: 3.958677e-04	ci left: 9.630687e-01	ci right 9.634503e-01	k: 3602592	n:3740000
KS ci ratio: 1.100659e-01	ci left: 3.203738e-04	ci right 3.579470e-04	k: 1267	n:3740000
CPAMD8   3740000 perm   6113 sec   (612 perm/sec)   p_kst 3.387701e-04   p_cons 9.632599e-01   p_joint 8.745989e-04

Joint ci ratio: 6.838493e-02	ci left: 8.455234e-04	ci right 9.056516e-04	k: 3282	n:3750000
Cons ci ratio: 3.953151e-04	ci left: 9.630734e-01	ci right 9.634544e-01	k: 3612241	n:3750000
KS ci ratio: 1.098927e-01	ci left: 3.205568e-04	ci right 3.580885e-04	k: 1271	n:3750000
CPAMD8   3750000 perm   6143 sec   (610 perm/sec)   p_kst 3.389333e-04   p_cons 9.632643e-01   p_joint 8.752000e-04

Joint ci ratio: 6.831215e-02	ci left: 8.451046e-04	ci right 9.051364e-04	k: 3289	n:3760000
Cons ci ratio: 3.947589e-04	ci left: 9.630791e-01	ci right 9.634596e-01	k: 3621894	n:3760000
KS ci ratio: 1.097633e-01	ci left: 3.204802e-04	ci right 3.579559e-04	k: 1274	n:3760000
CPAMD8   3760000 perm   6173 sec   (609 perm/sec)   p_kst 3.388298e-04   p_cons 9.632697e-01   p_joint 8.747340e-04

Joint ci ratio: 6.824997e-02	ci left: 8.444273e-04	ci right 9.043542e-04	k: 3295	n:3770000
Cons ci ratio: 3.942271e-04	ci left: 9.630807e-01	ci right 9.634607e-01	k: 3631532	n:3770000
KS ci ratio: 1.097203e-01	ci left: 3.198881e-04	ci right 3.572789e-04	k: 1275	n:3770000
CPAMD8   3770000 perm   6204 sec   (608 perm/sec)   p_kst 3.381963e-04   p_cons 9.632711e-01   p_joint 8.740053e-04

Joint ci ratio: 6.814666e-02	ci left: 8.447937e-04	ci right 9.046524e-04	k: 3305	n:3780000
Cons ci ratio: 3.936799e-04	ci left: 9.630856e-01	ci right 9.634650e-01	k: 3641182	n:3780000
KS ci ratio: 1.096774e-01	ci left: 3.192991e-04	ci right 3.566056e-04	k: 1276	n:3780000
CPAMD8   3780000 perm   6234 sec   (606 perm/sec)   p_kst 3.375661e-04   p_cons 9.632757e-01   p_joint 8.743386e-04

Joint ci ratio: 6.794136e-02	ci left: 8.477520e-04	ci right 9.076322e-04	k: 3325	n:3790000
Cons ci ratio: 3.931759e-04	ci left: 9.630830e-01	ci right 9.634620e-01	k: 3650804	n:3790000
KS ci ratio: 1.092929e-01	ci left: 3.207663e-04	ci right 3.581043e-04	k: 1285	n:3790000
CPAMD8   3790000 perm   6265 sec   (605 perm/sec)   p_kst 3.390501e-04   p_cons 9.632728e-01   p_joint 8.773087e-04

Joint ci ratio: 6.785981e-02	ci left: 8.475906e-04	ci right 9.073847e-04	k: 3333	n:3800000
Cons ci ratio: 3.926797e-04	ci left: 9.630793e-01	ci right 9.634578e-01	k: 3660422	n:3800000
KS ci ratio: 1.092080e-01	ci left: 3.204341e-04	ci right 3.577026e-04	k: 1287	n:3800000
CPAMD8   3800000 perm   6295 sec   (604 perm/sec)   p_kst 3.386842e-04   p_cons 9.632689e-01   p_joint 8.771053e-04

Joint ci ratio: 6.783952e-02	ci left: 8.458820e-04	ci right 9.055370e-04	k: 3335	n:3810000
Cons ci ratio: 3.921578e-04	ci left: 9.630807e-01	ci right 9.634587e-01	k: 3670059	n:3810000
KS ci ratio: 1.092081e-01	ci left: 3.195931e-04	ci right 3.567638e-04	k: 1287	n:3810000
CPAMD8   3810000 perm   6326 sec   (602 perm/sec)   p_kst 3.377953e-04   p_cons 9.632701e-01   p_joint 8.753281e-04

Joint ci ratio: 6.774819e-02	ci left: 8.459837e-04	ci right 9.055624e-04	k: 3344	n:3820000
Cons ci ratio: 3.916090e-04	ci left: 9.630873e-01	ci right 9.634648e-01	k: 3679716	n:3820000
KS ci ratio: 1.090811e-01	ci left: 3.195203e-04	ci right 3.566366e-04	k: 1290	n:3820000
CPAMD8   3820000 perm   6357 sec   (601 perm/sec)   p_kst 3.376963e-04   p_cons 9.632764e-01   p_joint 8.753927e-04

Joint ci ratio: 6.761689e-02	ci left: 8.471117e-04	ci right 9.066497e-04	k: 3357	n:3830000
Cons ci ratio: 3.910797e-04	ci left: 9.630908e-01	ci right 9.634678e-01	k: 3689361	n:3830000
KS ci ratio: 1.087865e-01	ci left: 3.204640e-04	ci right 3.575829e-04	k: 1297	n:3830000
CPAMD8   3830000 perm   6388 sec   (600 perm/sec)   p_kst 3.386423e-04   p_cons 9.632796e-01   p_joint 8.765013e-04

Joint ci ratio: 6.751642e-02	ci left: 8.474659e-04	ci right 9.069368e-04	k: 3367	n:3840000
Cons ci ratio: 3.905943e-04	ci left: 9.630867e-01	ci right 9.634632e-01	k: 3698977	n:3840000
KS ci ratio: 1.086610e-01	ci left: 3.203894e-04	ci right 3.574542e-04	k: 1300	n:3840000
CPAMD8   3840000 perm   6418 sec   (598 perm/sec)   p_kst 3.385417e-04   p_cons 9.632753e-01   p_joint 8.768229e-04

Joint ci ratio: 6.741640e-02	ci left: 8.478182e-04	ci right 9.072223e-04	k: 3377	n:3850000
Cons ci ratio: 3.900377e-04	ci left: 9.630958e-01	ci right 9.634718e-01	k: 3708644	n:3850000
KS ci ratio: 1.084944e-01	ci left: 3.205680e-04	ci right 3.575929e-04	k: 1304	n:3850000
CPAMD8   3850000 perm   6449 sec   (597 perm/sec)   p_kst 3.387013e-04   p_cons 9.632842e-01   p_joint 8.771429e-04

Joint ci ratio: 6.736660e-02	ci left: 8.468953e-04	ci right 9.061892e-04	k: 3382	n:3860000
Cons ci ratio: 3.895219e-04	ci left: 9.630979e-01	ci right 9.634734e-01	k: 3718284	n:3860000
KS ci ratio: 1.084944e-01	ci left: 3.197375e-04	ci right 3.566665e-04	k: 1304	n:3860000
CPAMD8   3860000 perm   6481 sec   (596 perm/sec)   p_kst 3.378238e-04   p_cons 9.632860e-01   p_joint 8.761658e-04

Joint ci ratio: 6.731690e-02	ci left: 8.459772e-04	ci right 9.051613e-04	k: 3387	n:3870000
Cons ci ratio: 3.890338e-04	ci left: 9.630954e-01	ci right 9.634704e-01	k: 3727906	n:3870000
KS ci ratio: 1.084944e-01	ci left: 3.189113e-04	ci right 3.557449e-04	k: 1304	n:3870000
CPAMD8   3870000 perm   6512 sec   (594 perm/sec)   p_kst 3.369509e-04   p_cons 9.632832e-01   p_joint 8.751938e-04

Joint ci ratio: 6.720787e-02	ci left: 8.465842e-04	ci right 9.057112e-04	k: 3398	n:3880000
Cons ci ratio: 3.885672e-04	ci left: 9.630892e-01	ci right 9.634637e-01	k: 3737514	n:3880000
KS ci ratio: 1.082872e-01	ci left: 3.193431e-04	ci right 3.561516e-04	k: 1309	n:3880000
CPAMD8   3880000 perm   6544 sec   (593 perm/sec)   p_kst 3.373711e-04   p_cons 9.632768e-01   p_joint 8.757732e-04

Joint ci ratio: 6.712892e-02	ci left: 8.464299e-04	ci right 9.054739e-04	k: 3406	n:3890000
Cons ci ratio: 3.880587e-04	ci left: 9.630910e-01	ci right 9.634651e-01	k: 3747153	n:3890000
KS ci ratio: 1.081222e-01	ci left: 3.195226e-04	ci right 3.562921e-04	k: 1313	n:3890000
CPAMD8   3890000 perm   6575 sec   (592 perm/sec)   p_kst 3.375321e-04   p_cons 9.632784e-01   p_joint 8.755784e-04

Joint ci ratio: 6.703061e-02	ci left: 8.467807e-04	ci right 9.057593e-04	k: 3416	n:3900000
Cons ci ratio: 3.875858e-04	ci left: 9.630867e-01	ci right 9.634603e-01	k: 3756768	n:3900000
KS ci ratio: 1.080401e-01	ci left: 3.192023e-04	ci right 3.559052e-04	k: 1315	n:3900000
CPAMD8   3900000 perm   6607 sec   (590 perm/sec)   p_kst 3.371795e-04   p_cons 9.632738e-01   p_joint 8.758974e-04

Joint ci ratio: 6.695229e-02	ci left: 8.466268e-04	ci right 9.055231e-04	k: 3424	n:3910000
Cons ci ratio: 3.871231e-04	ci left: 9.630809e-01	ci right 9.634540e-01	k: 3766377	n:3910000
KS ci ratio: 1.079581e-01	ci left: 3.188836e-04	ci right 3.555203e-04	k: 1317	n:3910000
CPAMD8   3910000 perm   6639 sec   (589 perm/sec)   p_kst 3.368286e-04   p_cons 9.632678e-01   p_joint 8.757033e-04

Joint ci ratio: 6.684501e-02	ci left: 8.472262e-04	ci right 9.060661e-04	k: 3435	n:3920000
Cons ci ratio: 3.866481e-04	ci left: 9.630776e-01	ci right 9.634503e-01	k: 3775996	n:3920000
KS ci ratio: 1.077538e-01	ci left: 3.193112e-04	ci right 3.559233e-04	k: 1322	n:3920000
CPAMD8   3920000 perm   6671 sec   (588 perm/sec)   p_kst 3.372449e-04   p_cons 9.632643e-01   p_joint 8.762755e-04

Joint ci ratio: 6.678675e-02	ci left: 8.465716e-04	ci right 9.053129e-04	k: 3441	n:3930000
Cons ci ratio: 3.861512e-04	ci left: 9.630787e-01	ci right 9.634509e-01	k: 3785632	n:3930000
KS ci ratio: 1.075913e-01	ci left: 3.194891e-04	ci right 3.560628e-04	k: 1326	n:3930000
CPAMD8   3930000 perm   6703 sec   (586 perm/sec)   p_kst 3.374046e-04   p_cons 9.632651e-01   p_joint 8.755725e-04

Joint ci ratio: 6.673833e-02	ci left: 8.456708e-04	ci right 9.043053e-04	k: 3446	n:3940000
Cons ci ratio: 3.856423e-04	ci left: 9.630823e-01	ci right 9.634540e-01	k: 3795278	n:3940000
KS ci ratio: 1.075508e-01	ci left: 3.189252e-04	ci right 3.554198e-04	k: 1327	n:3940000
CPAMD8   3940000 perm   6735 sec   (585 perm/sec)   p_kst 3.368020e-04   p_cons 9.632685e-01   p_joint 8.746193e-04

Joint ci ratio: 6.694281e-02	ci left: 8.383021e-04	ci right 8.966108e-04	k: 3425	n:3950000
Cons ci ratio: 3.851631e-04	ci left: 9.630809e-01	ci right 9.634521e-01	k: 3804904	n:3950000
KS ci ratio: 1.073087e-01	ci left: 3.195960e-04	ci right 3.560797e-04	k: 1333	n:3950000
CPAMD8   3950000 perm   6767 sec   (584 perm/sec)   p_kst 3.374684e-04   p_cons 9.632668e-01   p_joint 8.670886e-04

Joint ci ratio: 6.689404e-02	ci left: 8.374267e-04	ci right 8.956304e-04	k: 3430	n:3960000
Cons ci ratio: 3.847089e-04	ci left: 9.630751e-01	ci right 9.634459e-01	k: 3814513	n:3960000
KS ci ratio: 1.072283e-01	ci left: 3.192804e-04	ci right 3.556991e-04	k: 1335	n:3960000
CPAMD8   3960000 perm   6799 sec   (582 perm/sec)   p_kst 3.371212e-04   p_cons 9.632609e-01   p_joint 8.661616e-04

Joint ci ratio: 6.686486e-02	ci left: 8.360603e-04	ci right 8.941427e-04	k: 3433	n:3970000
Cons ci ratio: 3.841976e-04	ci left: 9.630802e-01	ci right 9.634506e-01	k: 3824165	n:3970000
KS ci ratio: 1.071081e-01	ci left: 3.192116e-04	ci right 3.555791e-04	k: 1338	n:3970000
CPAMD8   3970000 perm   6831 sec   (581 perm/sec)   p_kst 3.370277e-04   p_cons 9.632657e-01   p_joint 8.647355e-04

Joint ci ratio: 6.679683e-02	ci left: 8.356891e-04	ci right 8.936843e-04	k: 3440	n:3980000
Cons ci ratio: 3.836856e-04	ci left: 9.630858e-01	ci right 9.634557e-01	k: 3833819	n:3980000
KS ci ratio: 1.069884e-01	ci left: 3.191431e-04	ci right 3.554596e-04	k: 1341	n:3980000
CPAMD8   3980000 perm   6863 sec   (580 perm/sec)   p_kst 3.369347e-04   p_cons 9.632711e-01   p_joint 8.643216e-04

Joint ci ratio: 6.673869e-02	ci left: 8.350732e-04	ci right 8.929734e-04	k: 3446	n:3990000
Cons ci ratio: 3.831878e-04	ci left: 9.630892e-01	ci right 9.634585e-01	k: 3843464	n:3990000
KS ci ratio: 1.068690e-01	ci left: 3.190751e-04	ci right 3.553407e-04	k: 1344	n:3990000
CPAMD8   3990000 perm   6894 sec   (579 perm/sec)   p_kst 3.368421e-04   p_cons 9.632742e-01   p_joint 8.636591e-04

Joint ci ratio: 6.669037e-02	ci left: 8.342147e-04	ci right 8.920118e-04	k: 3451	n:4000000
Cons ci ratio: 3.827068e-04	ci left: 9.630897e-01	ci right 9.634586e-01	k: 3853098	n:4000000
KS ci ratio: 1.067896e-01	ci left: 3.187640e-04	ci right 3.549657e-04	k: 1346	n:4000000
CPAMD8   4000000 perm   6926 sec   (578 perm/sec)   p_kst 3.365000e-04   p_cons 9.632745e-01   p_joint 8.627500e-04

Joint ci ratio: 6.663251e-02	ci left: 8.336057e-04	ci right 8.913085e-04	k: 3457	n:4010000
Cons ci ratio: 3.822842e-04	ci left: 9.630798e-01	ci right 9.634482e-01	k: 3862690	n:4010000
KS ci ratio: 1.067105e-01	ci left: 3.184545e-04	ci right 3.545926e-04	k: 1348	n:4010000
CPAMD8   4010000 perm   6958 sec   (576 perm/sec)   p_kst 3.361596e-04   p_cons 9.632643e-01   p_joint 8.620948e-04

Joint ci ratio: 6.717923e-02	ci left: 8.178345e-04	ci right 8.749282e-04	k: 3401	n:4020000
Cons ci ratio: 3.818240e-04	ci left: 9.630771e-01	ci right 9.634451e-01	k: 3872311	n:4020000
KS ci ratio: 1.065132e-01	ci left: 3.188730e-04	ci right 3.549875e-04	k: 1353	n:4020000
CPAMD8   4020000 perm   6990 sec   (575 perm/sec)   p_kst 3.365672e-04   p_cons 9.632614e-01   p_joint 8.460199e-04

Joint ci ratio: 6.708070e-02	ci left: 8.182449e-04	ci right 8.752802e-04	k: 3411	n:4030000
Cons ci ratio: 3.813548e-04	ci left: 9.630764e-01	ci right 9.634440e-01	k: 3881940	n:4030000
KS ci ratio: 1.063562e-01	ci left: 3.190479e-04	ci right 3.551256e-04	k: 1357	n:4030000
CPAMD8   4030000 perm   7022 sec   (574 perm/sec)   p_kst 3.367246e-04   p_cons 9.632605e-01   p_joint 8.464020e-04

Joint ci ratio: 6.768908e-02	ci left: 8.013747e-04	ci right 8.577606e-04	k: 3350	n:4040000
Cons ci ratio: 3.808541e-04	ci left: 9.630820e-01	ci right 9.634491e-01	k: 3891594	n:4040000
KS ci ratio: 1.061999e-01	ci left: 3.192219e-04	ci right 3.552629e-04	k: 1361	n:4040000
CPAMD8   4040000 perm   7055 sec   (573 perm/sec)   p_kst 3.368812e-04   p_cons 9.632658e-01   p_joint 8.292079e-04

Joint ci ratio: 6.792284e-02	ci left: 7.938131e-04	ci right 8.498675e-04	k: 3327	n:4050000
Cons ci ratio: 3.803845e-04	ci left: 9.630820e-01	ci right 9.634487e-01	k: 3901226	n:4050000
KS ci ratio: 1.061610e-01	ci left: 3.186741e-04	ci right 3.546392e-04	k: 1362	n:4050000
CPAMD8   4050000 perm   7088 sec   (571 perm/sec)   p_kst 3.362963e-04   p_cons 9.632657e-01   p_joint 8.214815e-04

Joint ci ratio: 6.783118e-02	ci left: 7.940371e-04	ci right 8.500286e-04	k: 3336	n:4060000
Cons ci ratio: 3.799298e-04	ci left: 9.630796e-01	ci right 9.634458e-01	k: 3910848	n:4060000
KS ci ratio: 1.059281e-01	ci left: 3.193278e-04	ci right 3.552827e-04	k: 1368	n:4060000
CPAMD8   4060000 perm   7121 sec   (570 perm/sec)   p_kst 3.369458e-04   p_cons 9.632631e-01   p_joint 8.216749e-04

Joint ci ratio: 6.775002e-02	ci left: 7.940184e-04	ci right 8.499390e-04	k: 3344	n:4070000
Cons ci ratio: 3.794741e-04	ci left: 9.630777e-01	ci right 9.634435e-01	k: 3920472	n:4070000
KS ci ratio: 1.057351e-01	ci left: 3.197392e-04	ci right 3.556708e-04	k: 1373	n:4070000
CPAMD8   4070000 perm   7154 sec   (569 perm/sec)   p_kst 3.373464e-04   p_cons 9.632609e-01   p_joint 8.216216e-04

Joint ci ratio: 6.808705e-02	ci left: 7.841213e-04	ci right 8.396304e-04	k: 3311	n:4080000
Cons ci ratio: 3.790267e-04	ci left: 9.630746e-01	ci right 9.634399e-01	k: 3930091	n:4080000
KS ci ratio: 1.056967e-01	ci left: 3.191941e-04	ci right 3.550506e-04	k: 1374	n:4080000
CPAMD8   4080000 perm   7186 sec   (568 perm/sec)   p_kst 3.367647e-04   p_cons 9.632576e-01   p_joint 8.115196e-04

Joint ci ratio: 6.802548e-02	ci left: 7.836461e-04	ci right 8.390694e-04	k: 3317	n:4090000
Cons ci ratio: 3.785154e-04	ci left: 9.630838e-01	ci right 9.634486e-01	k: 3939760	n:4090000
KS ci ratio: 1.056199e-01	ci left: 3.188898e-04	ci right 3.546845e-04	k: 1376	n:4090000
CPAMD8   4090000 perm   7220 sec   (567 perm/sec)   p_kst 3.364303e-04   p_cons 9.632665e-01   p_joint 8.110024e-04

Joint ci ratio: 6.791297e-02	ci left: 7.843721e-04	ci right 8.397514e-04	k: 3328	n:4100000
Cons ci ratio: 3.780466e-04	ci left: 9.630853e-01	ci right 9.634497e-01	k: 3949398	n:4100000
KS ci ratio: 1.054287e-01	ci left: 3.192993e-04	ci right 3.550711e-04	k: 1381	n:4100000
CPAMD8   4100000 perm   7252 sec   (565 perm/sec)   p_kst 3.368293e-04   p_cons 9.632678e-01   p_joint 8.117073e-04

Joint ci ratio: 6.536835e-02	ci left: 8.456282e-04	ci right 9.030107e-04	k: 3592	n:4110000
Cons ci ratio: 3.776470e-04	ci left: 9.630741e-01	ci right 9.634381e-01	k: 3958984	n:4110000
KS ci ratio: 1.053525e-01	ci left: 3.189962e-04	ci right 3.547066e-04	k: 1383	n:4110000
CPAMD8   4110000 perm   7285 sec   (564 perm/sec)   p_kst 3.364964e-04   p_cons 9.632564e-01   p_joint 8.739659e-04

Joint ci ratio: 6.529570e-02	ci left: 8.454857e-04	ci right 9.027923e-04	k: 3600	n:4120000
Cons ci ratio: 3.771568e-04	ci left: 9.630803e-01	ci right 9.634438e-01	k: 3968641	n:4120000
KS ci ratio: 1.052385e-01	ci left: 3.189309e-04	ci right 3.545930e-04	k: 1386	n:4120000
CPAMD8   4120000 perm   7318 sec   (563 perm/sec)   p_kst 3.364078e-04   p_cons 9.632624e-01   p_joint 8.737864e-04

Joint ci ratio: 6.523234e-02	ci left: 8.451058e-04	ci right 9.023290e-04	k: 3607	n:4130000
Cons ci ratio: 3.766620e-04	ci left: 9.630876e-01	ci right 9.634507e-01	k: 3978303	n:4130000
KS ci ratio: 1.052006e-01	ci left: 3.183945e-04	ci right 3.539829e-04	k: 1387	n:4130000
CPAMD8   4130000 perm   7351 sec   (562 perm/sec)   p_kst 3.358354e-04   p_cons 9.632695e-01   p_joint 8.733656e-04

Joint ci ratio: 6.515113e-02	ci left: 8.452029e-04	ci right 9.023588e-04	k: 3616	n:4140000
Cons ci ratio: 3.761795e-04	ci left: 9.630930e-01	ci right 9.634556e-01	k: 3987957	n:4140000
KS ci ratio: 1.051249e-01	ci left: 3.180958e-04	ci right 3.536237e-04	k: 1389	n:4140000
CPAMD8   4140000 perm   7384 sec   (561 perm/sec)   p_kst 3.355072e-04   p_cons 9.632746e-01   p_joint 8.734300e-04

Joint ci ratio: 6.510618e-02	ci left: 8.443515e-04	ci right 9.014089e-04	k: 3621	n:4150000
Cons ci ratio: 3.756681e-04	ci left: 9.631042e-01	ci right 9.634663e-01	k: 3997635	n:4150000
KS ci ratio: 1.049740e-01	ci left: 3.182678e-04	ci right 3.537607e-04	k: 1393	n:4150000
CPAMD8   4150000 perm   7417 sec   (560 perm/sec)   p_kst 3.356627e-04   p_cons 9.632855e-01   p_joint 8.725301e-04

Joint ci ratio: 6.538691e-02	ci left: 8.349913e-04	ci right 8.916687e-04	k: 3590	n:4160000
Cons ci ratio: 3.752225e-04	ci left: 9.631032e-01	ci right 9.634649e-01	k: 4007263	n:4160000
KS ci ratio: 1.047862e-01	ci left: 3.186732e-04	ci right 3.541438e-04	k: 1398	n:4160000
CPAMD8   4160000 perm   7451 sec   (558 perm/sec)   p_kst 3.360577e-04   p_cons 9.632844e-01   p_joint 8.629808e-04

Joint ci ratio: 6.533237e-02	ci left: 8.344043e-04	ci right 8.909928e-04	k: 3596	n:4170000
Cons ci ratio: 3.747670e-04	ci left: 9.631044e-01	ci right 9.634657e-01	k: 4016900	n:4170000
KS ci ratio: 1.047488e-01	ci left: 3.181425e-04	ci right 3.535406e-04	k: 1399	n:4170000
CPAMD8   4170000 perm   7485 sec   (557 perm/sec)   p_kst 3.354916e-04   p_cons 9.632854e-01   p_joint 8.623501e-04

Joint ci ratio: 6.525079e-02	ci left: 8.345260e-04	ci right 8.910495e-04	k: 3605	n:4180000
Cons ci ratio: 3.743322e-04	ci left: 9.631020e-01	ci right 9.634629e-01	k: 4026522	n:4180000
KS ci ratio: 1.047114e-01	ci left: 3.176143e-04	ci right 3.529403e-04	k: 1400	n:4180000
CPAMD8   4180000 perm   7518 sec   (556 perm/sec)   p_kst 3.349282e-04   p_cons 9.632828e-01   p_joint 8.624402e-04

Joint ci ratio: 6.518756e-02	ci left: 8.341777e-04	ci right 8.906207e-04	k: 3612	n:4190000
Cons ci ratio: 3.738875e-04	ci left: 9.631018e-01	ci right 9.634622e-01	k: 4036153	n:4190000
KS ci ratio: 1.046368e-01	ci left: 3.173211e-04	ci right 3.525878e-04	k: 1402	n:4190000
CPAMD8   4190000 perm   7550 sec   (555 perm/sec)   p_kst 3.346062e-04   p_cons 9.632823e-01   p_joint 8.620525e-04

Joint ci ratio: 6.507955e-02	ci left: 8.350022e-04	ci right 8.914039e-04	k: 3624	n:4200000
Cons ci ratio: 3.734847e-04	ci left: 9.630940e-01	ci right 9.634540e-01	k: 4045752	n:4200000
KS ci ratio: 1.043767e-01	ci left: 3.181887e-04	ci right 3.534585e-04	k: 1409	n:4200000
CPAMD8   4200000 perm   7583 sec   (554 perm/sec)   p_kst 3.354762e-04   p_cons 9.632743e-01   p_joint 8.628571e-04

Joint ci ratio: 6.499890e-02	ci left: 8.351218e-04	ci right 8.914590e-04	k: 3633	n:4210000
Cons ci ratio: 3.730267e-04	ci left: 9.630969e-01	ci right 9.634564e-01	k: 4055396	n:4210000
KS ci ratio: 1.042658e-01	ci left: 3.181269e-04	ci right 3.533501e-04	k: 1412	n:4210000
CPAMD8   4210000 perm   7617 sec   (553 perm/sec)   p_kst 3.353919e-04   p_cons 9.632770e-01   p_joint 8.629454e-04

Joint ci ratio: 6.606280e-02	ci left: 8.061047e-04	ci right 8.614086e-04	k: 3517	n:4220000
Cons ci ratio: 3.725929e-04	ci left: 9.630955e-01	ci right 9.634546e-01	k: 4065022	n:4220000
KS ci ratio: 1.042659e-01	ci left: 3.173731e-04	ci right 3.525128e-04	k: 1412	n:4220000
CPAMD8   4220000 perm   7650 sec   (552 perm/sec)   p_kst 3.345972e-04   p_cons 9.632754e-01   p_joint 8.334123e-04

Joint ci ratio: 6.598782e-02	ci left: 8.060590e-04	ci right 8.612946e-04	k: 3525	n:4230000
Cons ci ratio: 3.721333e-04	ci left: 9.630993e-01	ci right 9.634580e-01	k: 4074670	n:4230000
KS ci ratio: 1.041186e-01	ci left: 3.175438e-04	ci right 3.526497e-04	k: 1416	n:4230000
CPAMD8   4230000 perm   7683 sec   (551 perm/sec)   p_kst 3.347518e-04   p_cons 9.632790e-01   p_joint 8.333333e-04

Joint ci ratio: 6.593177e-02	ci left: 8.055497e-04	ci right 8.607017e-04	k: 3531	n:4240000
Cons ci ratio: 3.716890e-04	ci left: 9.631005e-01	ci right 9.634588e-01	k: 4084307	n:4240000
KS ci ratio: 1.039354e-01	ci left: 3.179434e-04	ci right 3.530279e-04	k: 1421	n:4240000
CPAMD8   4240000 perm   7717 sec   (549 perm/sec)   p_kst 3.351415e-04   p_cons 9.632800e-01   p_joint 8.327830e-04

Joint ci ratio: 6.586654e-02	ci left: 8.052742e-04	ci right 8.603507e-04	k: 3538	n:4250000
Cons ci ratio: 3.712376e-04	ci left: 9.631034e-01	ci right 9.634612e-01	k: 4093951	n:4250000
KS ci ratio: 1.037895e-01	ci left: 3.181120e-04	ci right 3.531628e-04	k: 1425	n:4250000
CPAMD8   4250000 perm   7752 sec   (548 perm/sec)   p_kst 3.352941e-04   p_cons 9.632826e-01   p_joint 8.324706e-04

Joint ci ratio: 6.577366e-02	ci left: 8.056927e-04	ci right 8.607171e-04	k: 3548	n:4260000
Cons ci ratio: 3.707805e-04	ci left: 9.631076e-01	ci right 9.634650e-01	k: 4103601	n:4260000
KS ci ratio: 1.036442e-01	ci left: 3.182799e-04	ci right 3.532971e-04	k: 1429	n:4260000
CPAMD8   4260000 perm   7785 sec   (547 perm/sec)   p_kst 3.354460e-04   p_cons 9.632866e-01   p_joint 8.328638e-04

Joint ci ratio: 6.570890e-02	ci left: 8.054182e-04	ci right 8.603677e-04	k: 3555	n:4270000
Cons ci ratio: 3.703496e-04	ci left: 9.631071e-01	ci right 9.634641e-01	k: 4113231	n:4270000
KS ci ratio: 1.035718e-01	ci left: 3.179908e-04	ci right 3.529503e-04	k: 1431	n:4270000
CPAMD8   4270000 perm   7819 sec   (546 perm/sec)   p_kst 3.351288e-04   p_cons 9.632859e-01   p_joint 8.325527e-04

Joint ci ratio: 6.560749e-02	ci left: 8.060643e-04	ci right 8.609698e-04	k: 3566	n:4280000
Cons ci ratio: 3.699128e-04	ci left: 9.631081e-01	ci right 9.634646e-01	k: 4122867	n:4280000
KS ci ratio: 1.033196e-01	ci left: 3.188410e-04	ci right 3.538034e-04	k: 1438	n:4280000
CPAMD8   4280000 perm   7854 sec   (545 perm/sec)   p_kst 3.359813e-04   p_cons 9.632867e-01   p_joint 8.331776e-04

Joint ci ratio: 6.551570e-02	ci left: 8.064782e-04	ci right 8.613321e-04	k: 3576	n:4290000
Cons ci ratio: 3.694995e-04	ci left: 9.631048e-01	ci right 9.634610e-01	k: 4132485	n:4290000
KS ci ratio: 1.032120e-01	ci left: 3.187790e-04	ci right 3.536961e-04	k: 1441	n:4290000
CPAMD8   4290000 perm   7887 sec   (544 perm/sec)   p_kst 3.358974e-04   p_cons 9.632832e-01   p_joint 8.335664e-04

Joint ci ratio: 6.541518e-02	ci left: 8.071189e-04	ci right 8.619290e-04	k: 3587	n:4300000
Cons ci ratio: 3.690998e-04	ci left: 9.630992e-01	ci right 9.634550e-01	k: 4142093	n:4300000
KS ci ratio: 1.030336e-01	ci left: 3.191705e-04	ci right 3.540663e-04	k: 1446	n:4300000
CPAMD8   4300000 perm   7921 sec   (543 perm/sec)   p_kst 3.362791e-04   p_cons 9.632774e-01   p_joint 8.341860e-04

Joint ci ratio: 6.528789e-02	ci left: 8.084414e-04	ci right 8.632304e-04	k: 3601	n:4310000
Cons ci ratio: 3.686493e-04	ci left: 9.631037e-01	ci right 9.634590e-01	k: 4151744	n:4310000
KS ci ratio: 1.027852e-01	ci left: 3.200123e-04	ci right 3.549107e-04	k: 1453	n:4310000
CPAMD8   4310000 perm   7955 sec   (542 perm/sec)   p_kst 3.371230e-04   p_cons 9.632817e-01   p_joint 8.354988e-04

Joint ci ratio: 6.523360e-02	ci left: 8.079363e-04	ci right 8.626438e-04	k: 3607	n:4320000
Cons ci ratio: 3.681944e-04	ci left: 9.631093e-01	ci right 9.634642e-01	k: 4161400	n:4320000
KS ci ratio: 1.027499e-01	ci left: 3.194970e-04	ci right 3.543266e-04	k: 1454	n:4320000
CPAMD8   4320000 perm   7989 sec   (541 perm/sec)   p_kst 3.365741e-04   p_cons 9.632870e-01   p_joint 8.349537e-04

Joint ci ratio: 6.300119e-02	ci left: 8.651550e-04	ci right 9.216591e-04	k: 3867	n:4330000
Cons ci ratio: 3.677881e-04	ci left: 9.631058e-01	ci right 9.634603e-01	k: 4171017	n:4330000
KS ci ratio: 1.025387e-01	ci left: 3.201093e-04	ci right 3.549295e-04	k: 1460	n:4330000
CPAMD8   4330000 perm   8023 sec   (540 perm/sec)   p_kst 3.371824e-04   p_cons 9.632834e-01   p_joint 8.930716e-04

Joint ci ratio: 5.701467e-02	ci left: 1.056993e-03	ci right 1.119251e-03	k: 4721	n:4340000
Cons ci ratio: 3.673866e-04	ci left: 9.631017e-01	ci right 9.634558e-01	k: 4180631	n:4340000
KS ci ratio: 1.024335e-01	ci left: 3.200452e-04	ci right 3.548206e-04	k: 1463	n:4340000
CPAMD8   4340000 perm   8058 sec   (539 perm/sec)   p_kst 3.370968e-04   p_cons 9.632790e-01   p_joint 1.087788e-03

Joint ci ratio: 5.695440e-02	ci left: 1.056830e-03	ci right 1.119010e-03	k: 4731	n:4350000
Cons ci ratio: 3.669937e-04	ci left: 9.630962e-01	ci right 9.634499e-01	k: 4190239	n:4350000
KS ci ratio: 1.022591e-01	ci left: 3.204295e-04	ci right 3.551838e-04	k: 1468	n:4350000
CPAMD8   4350000 perm   8093 sec   (538 perm/sec)   p_kst 3.374713e-04   p_cons 9.632733e-01   p_joint 1.087586e-03

Joint ci ratio: 5.688832e-02	ci left: 1.056893e-03	ci right 1.119002e-03	k: 4742	n:4360000
Cons ci ratio: 3.665723e-04	ci left: 9.630964e-01	ci right 9.634498e-01	k: 4199872	n:4360000
KS ci ratio: 1.022243e-01	ci left: 3.199181e-04	ci right 3.546044e-04	k: 1469	n:4360000
CPAMD8   4360000 perm   8128 sec   (536 perm/sec)   p_kst 3.369266e-04   p_cons 9.632734e-01   p_joint 1.087615e-03

Joint ci ratio: 5.684042e-02	ci left: 1.056279e-03	ci right 1.118298e-03	k: 4750	n:4370000
Cons ci ratio: 3.661677e-04	ci left: 9.630937e-01	ci right 9.634466e-01	k: 4209492	n:4370000
KS ci ratio: 1.021201e-01	ci left: 3.198549e-04	ci right 3.544970e-04	k: 1472	n:4370000
CPAMD8   4370000 perm   8163 sec   (535 perm/sec)   p_kst 3.368421e-04   p_cons 9.632705e-01   p_joint 1.086957e-03

Joint ci ratio: 5.679862e-02	ci left: 1.055443e-03	ci right 1.117366e-03	k: 4757	n:4380000
Cons ci ratio: 3.657290e-04	ci left: 9.630979e-01	ci right 9.634504e-01	k: 4219142	n:4380000
KS ci ratio: 1.020509e-01	ci left: 3.195696e-04	ci right 3.541559e-04	k: 1474	n:4380000
CPAMD8   4380000 perm   8199 sec   (534 perm/sec)   p_kst 3.365297e-04   p_cons 9.632744e-01   p_joint 1.086073e-03

Joint ci ratio: 5.672117e-02	ci left: 1.055958e-03	ci right 1.117824e-03	k: 4770	n:4390000
Cons ci ratio: 3.653425e-04	ci left: 9.630922e-01	ci right 9.634443e-01	k: 4228749	n:4390000
KS ci ratio: 1.019473e-01	ci left: 3.195076e-04	ci right 3.540500e-04	k: 1477	n:4390000
CPAMD8   4390000 perm   8235 sec   (533 perm/sec)   p_kst 3.364465e-04   p_cons 9.632686e-01   p_joint 1.086560e-03

Joint ci ratio: 5.670340e-02	ci left: 1.054230e-03	ci right 1.115975e-03	k: 4773	n:4400000
Cons ci ratio: 3.649127e-04	ci left: 9.630952e-01	ci right 9.634469e-01	k: 4238394	n:4400000
KS ci ratio: 9.725520e-02	ci left: 3.511375e-04	ci right 3.872526e-04	k: 1623	n:4400000
CPAMD8   4400000 perm   8270 sec   (532 perm/sec)   p_kst 3.688636e-04   p_cons 9.632714e-01   p_joint 1.084773e-03

Outputting figure to mutsig2_images.part000000000042/CPAMD8.7_5967_4400000_0.00036886_0.96327_0.0010848.png
                gene_name: CPAMD8
               theta_stop: 0.097 
                    nperm: 4400000 
                     p_ks: 0.00037 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00039 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0011 

Current progress: 21 percent done.
CPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
Cons ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
KS ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
CPB1   10000 perm   2 sec   (5416 perm/sec)   p_kst 8.999000e-01   p_cons 4.118000e-01   p_joint 8.261000e-01

Outputting figure to mutsig2_images.part000000000042/CPB1.7_1298_10000_0.8999_0.4118_0.8261.png
                gene_name: CPB1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 23 percent done.
CPSF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
CPSF1   10000 perm   2 sec   (4935 perm/sec)   p_kst 3.145000e-01   p_cons 7.600000e-02   p_joint 1.885000e-01

Joint ci ratio: 6.837259e-02	ci left: 1.363027e-01	ci right 1.460018e-01	k: 2822	n:20000
Cons ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
KS ci ratio: 4.042495e-02	ci left: 3.132880e-01	ci right 3.262644e-01	k: 6395	n:20000
CPSF1   20000 perm   4 sec   (4474 perm/sec)   p_kst 3.197500e-01   p_cons 7.775000e-02   p_joint 1.411000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF1.6_4480_20000_0.31975_0.07775_0.1411.png
                gene_name: CPSF1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 25 percent done.
CPT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
Cons ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
KS ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
CPT1A   10000 perm   2 sec   (5436 perm/sec)   p_kst 1.038000e-01   p_cons 7.890000e-02   p_joint 1.259000e-01

Joint ci ratio: 1.175168e-01	ci left: 4.959502e-02	ci right 5.583583e-02	k: 1053	n:20000
Cons ci ratio: 9.546324e-02	ci left: 7.402653e-02	ci right 8.149677e-02	k: 1554	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
CPT1A   20000 perm   4 sec   (4890 perm/sec)   p_kst 1.059500e-01   p_cons 7.770000e-02   p_joint 5.265000e-02

Joint ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
Cons ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
KS ci ratio: 6.580682e-02	ci left: 1.022754e-01	ci right 1.092678e-01	k: 3172	n:30000
CPT1A   30000 perm   6 sec   (4691 perm/sec)   p_kst 1.057333e-01   p_cons 7.570000e-02   p_joint 5.190000e-02

Outputting figure to mutsig2_images.part000000000042/CPT1A.7_2434_30000_0.10573_0.0757_0.0519.png
                gene_name: CPT1A
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 27 percent done.
CPVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
CPVL   10000 perm   2 sec   (5606 perm/sec)   p_kst 8.980000e-01   p_cons 5.600000e-01   p_joint 9.254000e-01

Outputting figure to mutsig2_images.part000000000042/CPVL.7_1479_10000_0.898_0.56_0.9254.png
                gene_name: CPVL
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 29 percent done.
CPXM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
Cons ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
KS ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
CPXM1   10000 perm   2 sec   (5082 perm/sec)   p_kst 7.167000e-01   p_cons 5.353000e-01   p_joint 8.645000e-01

Outputting figure to mutsig2_images.part000000000042/CPXM1.7_2261_10000_0.7167_0.5353_0.8645.png
                gene_name: CPXM1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 30 percent done.
CPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
CPZ   10000 perm   2 sec   (5656 perm/sec)   p_kst 7.856000e-01   p_cons 8.819000e-01   p_joint 8.737000e-01

Outputting figure to mutsig2_images.part000000000042/CPZ.7_2003_10000_0.7856_0.8819_0.8737.png
                gene_name: CPZ
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
CPA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
CPA3   10000 perm   2 sec   (5855 perm/sec)   p_kst 2.700000e-01   p_cons 1.246000e-01   p_joint 2.185000e-01

Joint ci ratio: 6.410752e-02	ci left: 1.524273e-01	ci right 1.625725e-01	k: 3149	n:20000
Cons ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
KS ci ratio: 4.519303e-02	ci left: 2.671320e-01	ci right 2.795340e-01	k: 5466	n:20000
CPA3   20000 perm   4 sec   (5272 perm/sec)   p_kst 2.733000e-01   p_cons 1.302500e-01   p_joint 1.574500e-01

Outputting figure to mutsig2_images.part000000000042/CPA3.6_1298_20000_0.2733_0.13025_0.15745.png
                gene_name: CPA3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 34 percent done.
CPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
Cons ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
CPN1   10000 perm   2 sec   (5544 perm/sec)   p_kst 6.990000e-02   p_cons 1.422000e-01   p_joint 8.470000e-02

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 7.005750e-02	ci left: 1.305879e-01	ci right 1.401184e-01	k: 2706	n:20000
KS ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
CPN1   20000 perm   4 sec   (5028 perm/sec)   p_kst 6.845000e-02   p_cons 1.353000e-01   p_joint 9.105000e-02

Joint ci ratio: 8.003932e-02	ci left: 7.106253e-02	ci right 7.702028e-02	k: 2220	n:30000
Cons ci ratio: 5.386059e-02	ci left: 1.460098e-01	ci right 1.541248e-01	k: 4501	n:30000
KS ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
CPN1   30000 perm   6 sec   (4826 perm/sec)   p_kst 6.926667e-02   p_cons 1.500333e-01   p_joint 7.400000e-02

Outputting figure to mutsig2_images.part000000000042/CPN1.6_1413_30000_0.069267_0.15003_0.074.png
                gene_name: CPN1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 36 percent done.
CPSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
KS ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
CPSF6   10000 perm   2 sec   (5756 perm/sec)   p_kst 2.830000e-01   p_cons 2.282000e-01   p_joint 2.794000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF6.6_1692_10000_0.283_0.2282_0.2794.png
                gene_name: CPSF6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
CPT1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
Cons ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KS ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
CPT1C   10000 perm   2 sec   (5243 perm/sec)   p_kst 3.643000e-01   p_cons 1.662000e-01   p_joint 2.855000e-01

Outputting figure to mutsig2_images.part000000000042/CPT1C.6_2484_10000_0.3643_0.1662_0.2855.png
                gene_name: CPT1C
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 39 percent done.
CPA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
KS ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
CPA5   10000 perm   2 sec   (5865 perm/sec)   p_kst 4.620000e-02   p_cons 5.540000e-02   p_joint 7.810000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
KS ci ratio: 1.249523e-01	ci left: 4.396240e-02	ci right 4.987023e-02	k: 937	n:20000
CPA5   20000 perm   4 sec   (5251 perm/sec)   p_kst 4.685000e-02   p_cons 6.125000e-02   p_joint 4.285000e-02

Joint ci ratio: 1.131511e-01	ci left: 3.628610e-02	ci right 4.067052e-02	k: 1153	n:30000
Cons ci ratio: 8.976508e-02	ci left: 5.707763e-02	ci right 6.247468e-02	k: 1792	n:30000
KS ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
CPA5   30000 perm   6 sec   (5004 perm/sec)   p_kst 4.743333e-02   p_cons 5.973333e-02   p_joint 3.843333e-02

Joint ci ratio: 9.165953e-02	ci left: 4.171734e-02	ci right 4.574923e-02	k: 1748	n:40000
Cons ci ratio: 7.740678e-02	ci left: 5.791308e-02	ci right 6.260101e-02	k: 2409	n:40000
KS ci ratio: 8.769547e-02	ci left: 4.548489e-02	ci right 4.968111e-02	k: 1902	n:40000
CPA5   40000 perm   8 sec   (4847 perm/sec)   p_kst 4.755000e-02   p_cons 6.022500e-02   p_joint 4.370000e-02

Outputting figure to mutsig2_images.part000000000042/CPA5.5_1355_40000_0.04755_0.060225_0.0437.png
                gene_name: CPA5
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 41 percent done.
CPEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
Cons ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
KS ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
CPEB1   10000 perm   2 sec   (5505 perm/sec)   p_kst 2.655000e-01   p_cons 3.121000e-01   p_joint 3.811000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB1.5_1749_10000_0.2655_0.3121_0.3811.png
                gene_name: CPEB1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 43 percent done.
CPM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
CPM   10000 perm   2 sec   (5721 perm/sec)   p_kst 1.362000e-01   p_cons 4.550000e-02   p_joint 1.470000e-01

Joint ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
Cons ci ratio: 1.247431e-01	ci left: 4.410792e-02	ci right 5.002466e-02	k: 940	n:20000
KS ci ratio: 7.052524e-02	ci left: 1.290611e-01	ci right 1.385456e-01	k: 2675	n:20000
CPM   20000 perm   4 sec   (5116 perm/sec)   p_kst 1.337500e-01   p_cons 4.700000e-02   p_joint 6.025000e-02

Joint ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
Cons ci ratio: 1.022528e-01	ci left: 4.430721e-02	ci right 4.911440e-02	k: 1400	n:30000
KS ci ratio: 5.770017e-02	ci left: 1.294727e-01	ci right 1.371984e-01	k: 3999	n:30000
CPM   30000 perm   6 sec   (4898 perm/sec)   p_kst 1.333000e-01   p_cons 4.666667e-02   p_joint 5.506667e-02

Joint ci ratio: 8.492071e-02	ci left: 4.842328e-02	ci right 5.274227e-02	k: 2022	n:40000
Cons ci ratio: 8.943632e-02	ci left: 4.377187e-02	ci right 4.789439e-02	k: 1832	n:40000
KS ci ratio: 4.982096e-02	ci left: 1.306758e-01	ci right 1.373774e-01	k: 5360	n:40000
CPM   40000 perm   8 sec   (4756 perm/sec)   p_kst 1.340000e-01   p_cons 4.580000e-02   p_joint 5.055000e-02

Outputting figure to mutsig2_images.part000000000042/CPM.5_1364_40000_0.134_0.0458_0.05055.png
                gene_name: CPM
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 45 percent done.
CPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
CPN2   10000 perm   2 sec   (5807 perm/sec)   p_kst 9.500000e-03   p_cons 5.990000e-02   p_joint 1.040000e-02

Joint ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
Cons ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
KS ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
CPN2   20000 perm   4 sec   (5203 perm/sec)   p_kst 1.035000e-02   p_cons 6.140000e-02   p_joint 6.900000e-03

Joint ci ratio: 3.541719e-01	ci left: 3.347848e-03	ci right 4.817423e-03	k: 121	n:30000
Cons ci ratio: 8.770250e-02	ci left: 5.968872e-02	ci right 6.519639e-02	k: 1872	n:30000
KS ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
CPN2   30000 perm   6 sec   (4981 perm/sec)   p_kst 1.043333e-02   p_cons 6.240000e-02   p_joint 4.033333e-03

Joint ci ratio: 1.858457e-01	ci left: 9.977125e-03	ci right 1.204478e-02	k: 439	n:40000
Cons ci ratio: 7.706706e-02	ci left: 5.840401e-02	ci right 6.311001e-02	k: 2429	n:40000
KS ci ratio: 1.858457e-01	ci left: 9.977125e-03	ci right 1.204478e-02	k: 439	n:40000
CPN2   40000 perm   8 sec   (4841 perm/sec)   p_kst 1.097500e-02   p_cons 6.072500e-02   p_joint 1.097500e-02

Joint ci ratio: 2.022094e-01	ci left: 6.705477e-03	ci right 8.232543e-03	k: 372	n:50000
Cons ci ratio: 6.909465e-02	ci left: 5.838648e-02	ci right 6.258472e-02	k: 3023	n:50000
KS ci ratio: 1.662259e-01	ci left: 1.008506e-02	ci right 1.193237e-02	k: 549	n:50000
CPN2   50000 perm   11 sec   (4729 perm/sec)   p_kst 1.098000e-02   p_cons 6.046000e-02   p_joint 7.440000e-03

Joint ci ratio: 1.943680e-01	ci left: 6.078723e-03	ci right 7.402999e-03	k: 403	n:60000
Cons ci ratio: 6.346455e-02	ci left: 5.788287e-02	ci right 6.169318e-02	k: 3586	n:60000
KS ci ratio: 1.531571e-01	ci left: 9.972321e-03	ci right 1.164217e-02	k: 647	n:60000
CPN2   60000 perm   13 sec   (4629 perm/sec)   p_kst 1.078333e-02   p_cons 5.976667e-02   p_joint 6.716667e-03

Joint ci ratio: 1.886772e-01	ci left: 5.550207e-03	ci right 6.719871e-03	k: 428	n:70000
Cons ci ratio: 5.886786e-02	ci left: 5.781508e-02	ci right 6.133582e-02	k: 4169	n:70000
KS ci ratio: 1.405792e-01	ci left: 1.021293e-02	ci right 1.177086e-02	k: 768	n:70000
CPN2   70000 perm   15 sec   (4541 perm/sec)   p_kst 1.097143e-02   p_cons 5.955714e-02   p_joint 6.114286e-03

Joint ci ratio: 1.876538e-01	ci left: 4.915833e-03	ci right 5.945534e-03	k: 433	n:80000
Cons ci ratio: 5.504571e-02	ci left: 5.796922e-02	ci right 6.126281e-02	k: 4768	n:80000
KS ci ratio: 1.306650e-01	ci left: 1.039761e-02	ci right 1.186317e-02	k: 889	n:80000
CPN2   80000 perm   18 sec   (4451 perm/sec)   p_kst 1.111250e-02   p_cons 5.960000e-02   p_joint 5.412500e-03

Joint ci ratio: 1.777011e-01	ci left: 4.899790e-03	ci right 5.865845e-03	k: 483	n:90000
Cons ci ratio: 5.196009e-02	ci left: 5.793025e-02	ci right 6.103155e-02	k: 5352	n:90000
KS ci ratio: 1.225287e-01	ci left: 1.055503e-02	ci right 1.194341e-02	k: 1011	n:90000
CPN2   90000 perm   21 sec   (4364 perm/sec)   p_kst 1.123333e-02   p_cons 5.946667e-02   p_joint 5.366667e-03

Joint ci ratio: 1.833530e-01	ci left: 4.132759e-03	ci right 4.976374e-03	k: 454	n:100000
Cons ci ratio: 4.925750e-02	ci left: 5.809104e-02	ci right 6.103457e-02	k: 5955	n:100000
KS ci ratio: 1.163166e-01	ci left: 1.057639e-02	ci right 1.189219e-02	k: 1122	n:100000
CPN2   100000 perm   23 sec   (4283 perm/sec)   p_kst 1.122000e-02   p_cons 5.955000e-02   p_joint 4.540000e-03

Joint ci ratio: 1.390537e-01	ci left: 6.673743e-03	ci right 7.679776e-03	k: 788	n:110000
Cons ci ratio: 4.699419e-02	ci left: 5.809116e-02	ci right 6.089576e-02	k: 6543	n:110000
KS ci ratio: 1.103314e-01	ci left: 1.071910e-02	ci right 1.197958e-02	k: 1247	n:110000
CPN2   110000 perm   26 sec   (4214 perm/sec)   p_kst 1.133636e-02   p_cons 5.948182e-02   p_joint 7.163636e-03

Joint ci ratio: 1.532190e-01	ci left: 5.009206e-03	ci right 5.848301e-03	k: 650	n:120000
Cons ci ratio: 4.498318e-02	ci left: 5.817631e-02	ci right 6.086170e-02	k: 7141	n:120000
KS ci ratio: 1.048755e-01	ci left: 1.090441e-02	ci right 1.211937e-02	k: 1380	n:120000
CPN2   120000 perm   29 sec   (4144 perm/sec)   p_kst 1.150000e-02   p_cons 5.950833e-02   p_joint 5.416667e-03

Joint ci ratio: 1.479748e-01	ci left: 4.971792e-03	ci right 5.773591e-03	k: 697	n:130000
Cons ci ratio: 4.318631e-02	ci left: 5.831144e-02	ci right 6.089286e-02	k: 7747	n:130000
KS ci ratio: 1.012789e-01	ci left: 1.081499e-02	ci right 1.197619e-02	k: 1480	n:130000
CPN2   130000 perm   32 sec   (4072 perm/sec)   p_kst 1.138462e-02   p_cons 5.959231e-02   p_joint 5.361538e-03

Joint ci ratio: 1.426582e-01	ci left: 4.981475e-03	ci right 5.753515e-03	k: 750	n:140000
Cons ci ratio: 4.164724e-02	ci left: 5.827349e-02	ci right 6.075908e-02	k: 8331	n:140000
KS ci ratio: 9.802852e-02	ci left: 1.073895e-02	ci right 1.185286e-02	k: 1580	n:140000
CPN2   140000 perm   35 sec   (4007 perm/sec)   p_kst 1.128571e-02   p_cons 5.950714e-02   p_joint 5.357143e-03

Joint ci ratio: 1.383093e-01	ci left: 4.958126e-03	ci right 5.701192e-03	k: 798	n:150000
Cons ci ratio: 4.020429e-02	ci left: 5.840051e-02	ci right 6.080321e-02	k: 8939	n:150000
KS ci ratio: 9.495801e-02	ci left: 1.069961e-02	ci right 1.177274e-02	k: 1684	n:150000
CPN2   150000 perm   38 sec   (3947 perm/sec)   p_kst 1.122667e-02   p_cons 5.959333e-02   p_joint 5.320000e-03

Joint ci ratio: 1.207496e-01	ci left: 6.148454e-03	ci right 6.944586e-03	k: 1046	n:160000
Cons ci ratio: 3.896459e-02	ci left: 5.833337e-02	ci right 6.065763e-02	k: 9518	n:160000
KS ci ratio: 9.192548e-02	ci left: 1.072064e-02	ci right 1.175968e-02	k: 1797	n:160000
CPN2   160000 perm   41 sec   (3886 perm/sec)   p_kst 1.123125e-02   p_cons 5.948750e-02   p_joint 6.537500e-03

Joint ci ratio: 1.192916e-01	ci left: 5.935090e-03	ci right 6.693659e-03	k: 1072	n:170000
Cons ci ratio: 3.889439e-02	ci left: 5.528469e-02	ci right 5.748341e-02	k: 9584	n:170000
KS ci ratio: 8.911892e-02	ci left: 1.075118e-02	ci right 1.175971e-02	k: 1912	n:170000
CPN2   170000 perm   44 sec   (3827 perm/sec)   p_kst 1.124706e-02   p_cons 5.637647e-02   p_joint 6.305882e-03

Joint ci ratio: 1.194809e-01	ci left: 5.589134e-03	ci right 6.304697e-03	k: 1069	n:180000
Cons ci ratio: 3.778046e-02	ci left: 5.536618e-02	ci right 5.750369e-02	k: 10157	n:180000
KS ci ratio: 8.644695e-02	ci left: 1.080594e-02	ci right 1.178768e-02	k: 2032	n:180000
CPN2   180000 perm   48 sec   (3770 perm/sec)   p_kst 1.128889e-02   p_cons 5.642778e-02   p_joint 5.938889e-03

Joint ci ratio: 1.160589e-01	ci left: 5.621894e-03	ci right 6.319624e-03	k: 1133	n:190000
Cons ci ratio: 3.671538e-02	ci left: 5.555989e-02	ci right 5.764313e-02	k: 10753	n:190000
KS ci ratio: 8.408077e-02	ci left: 1.083472e-02	ci right 1.179081e-02	k: 2148	n:190000
CPN2   190000 perm   51 sec   (3716 perm/sec)   p_kst 1.130526e-02   p_cons 5.659474e-02   p_joint 5.963158e-03

Joint ci ratio: 1.147606e-01	ci left: 5.467021e-03	ci right 6.137424e-03	k: 1159	n:200000
Cons ci ratio: 3.576898e-02	ci left: 5.563583e-02	ci right 5.766704e-02	k: 11329	n:200000
KS ci ratio: 8.166212e-02	ci left: 1.092463e-02	ci right 1.185961e-02	k: 2277	n:200000
CPN2   200000 perm   55 sec   (3665 perm/sec)   p_kst 1.138500e-02   p_cons 5.664500e-02   p_joint 5.795000e-03

Joint ci ratio: 1.157335e-01	ci left: 5.118766e-03	ci right 5.752146e-03	k: 1140	n:210000
Cons ci ratio: 3.498418e-02	ci left: 5.542652e-02	ci right 5.740479e-02	k: 11846	n:210000
KS ci ratio: 7.940745e-02	ci left: 1.101568e-02	ci right 1.193121e-02	k: 2408	n:210000
CPN2   210000 perm   58 sec   (3615 perm/sec)   p_kst 1.146667e-02   p_cons 5.640952e-02   p_joint 5.428571e-03

Joint ci ratio: 1.139060e-01	ci left: 5.049436e-03	ci right 5.663708e-03	k: 1177	n:220000
Cons ci ratio: 3.414507e-02	ci left: 5.555682e-02	ci right 5.749125e-02	k: 12434	n:220000
KS ci ratio: 7.759287e-02	ci left: 1.102298e-02	ci right 1.191724e-02	k: 2522	n:220000
CPN2   220000 perm   62 sec   (3564 perm/sec)   p_kst 1.146364e-02   p_cons 5.651818e-02   p_joint 5.350000e-03

Joint ci ratio: 1.125353e-01	ci left: 4.952397e-03	ci right 5.547133e-03	k: 1206	n:230000
Cons ci ratio: 3.238385e-02	ci left: 5.892063e-02	ci right 6.086440e-02	k: 13774	n:230000
KS ci ratio: 7.570870e-02	ci left: 1.108532e-02	ci right 1.196184e-02	k: 2649	n:230000
CPN2   230000 perm   65 sec   (3517 perm/sec)   p_kst 1.151739e-02   p_cons 5.988696e-02   p_joint 5.243478e-03

Joint ci ratio: 1.104962e-01	ci left: 4.928314e-03	ci right 5.508734e-03	k: 1251	n:240000
Cons ci ratio: 3.173951e-02	ci left: 5.880910e-02	ci right 6.070988e-02	k: 14341	n:240000
KS ci ratio: 7.396890e-02	ci left: 1.113862e-02	ci right 1.199824e-02	k: 2775	n:240000
CPN2   240000 perm   69 sec   (3470 perm/sec)   p_kst 1.156250e-02   p_cons 5.975417e-02   p_joint 5.212500e-03

Joint ci ratio: 1.130780e-01	ci left: 4.513389e-03	ci right 5.058190e-03	k: 1195	n:250000
Cons ci ratio: 3.107677e-02	ci left: 5.890540e-02	ci right 6.076882e-02	k: 14958	n:250000
KS ci ratio: 7.249557e-02	ci left: 1.114072e-02	ci right 1.198266e-02	k: 2889	n:250000
CPN2   250000 perm   73 sec   (3424 perm/sec)   p_kst 1.155600e-02   p_cons 5.983200e-02   p_joint 4.780000e-03

Joint ci ratio: 1.108750e-01	ci left: 4.519242e-03	ci right 5.053427e-03	k: 1243	n:260000
Cons ci ratio: 3.050495e-02	ci left: 5.880755e-02	ci right 6.063305e-02	k: 15526	n:260000
KS ci ratio: 7.115485e-02	ci left: 1.112771e-02	ci right 1.195246e-02	k: 2999	n:260000
CPN2   260000 perm   77 sec   (3380 perm/sec)   p_kst 1.153462e-02   p_cons 5.971538e-02   p_joint 4.780769e-03

Joint ci ratio: 1.088382e-01	ci left: 4.521154e-03	ci right 5.045119e-03	k: 1290	n:270000
Cons ci ratio: 2.995071e-02	ci left: 5.876506e-02	ci right 6.055552e-02	k: 16107	n:270000
KS ci ratio: 6.976116e-02	ci left: 1.115583e-02	ci right 1.196582e-02	k: 3120	n:270000
CPN2   270000 perm   81 sec   (3340 perm/sec)   p_kst 1.155556e-02   p_cons 5.965556e-02   p_joint 4.777778e-03

Joint ci ratio: 9.705062e-02	ci left: 5.511616e-03	ci right 6.077259e-03	k: 1621	n:280000
Cons ci ratio: 2.940783e-02	ci left: 5.879327e-02	ci right 6.055157e-02	k: 16707	n:280000
KS ci ratio: 6.822309e-02	ci left: 1.125582e-02	ci right 1.205434e-02	k: 3262	n:280000
CPN2   280000 perm   85 sec   (3301 perm/sec)   p_kst 1.165000e-02   p_cons 5.966786e-02   p_joint 5.789286e-03

Outputting figure to mutsig2_images.part000000000042/CPN2.5_1642_280000_0.01165_0.059668_0.0057893.png
                gene_name: CPN2
               theta_stop: 0.097 
                    nperm: 280000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.0058 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0061 

Current progress: 46 percent done.
CPSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
CPSF2   10000 perm   2 sec   (5392 perm/sec)   p_kst 7.890000e-01   p_cons 3.318000e-01   p_joint 7.877000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF2.5_2405_10000_0.789_0.3318_0.7877.png
                gene_name: CPSF2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 48 percent done.
CPT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
Cons ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
CPT1B   10000 perm   2 sec   (5282 perm/sec)   p_kst 1.228000e-01   p_cons 6.371000e-01   p_joint 2.142000e-01

Joint ci ratio: 3.634078e-02	ci left: 3.610619e-01	ci right 3.744766e-01	k: 7355	n:20000
Cons ci ratio: 2.087154e-02	ci left: 6.314455e-01	ci right 6.448143e-01	k: 12763	n:20000
KS ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
CPT1B   20000 perm   4 sec   (4780 perm/sec)   p_kst 1.241500e-01   p_cons 6.381500e-01   p_joint 3.677500e-01

Outputting figure to mutsig2_images.part000000000042/CPT1B.5_2391_20000_0.12415_0.63815_0.36775.png
                gene_name: CPT1B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
CORO2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
Cons ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
KS ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
CORO2B   10000 perm   2 sec   (6090 perm/sec)   p_kst 1.175000e-01   p_cons 5.447000e-01   p_joint 1.989000e-01

Joint ci ratio: 5.461841e-02	ci left: 1.991758e-01	ci right 2.104101e-01	k: 4095	n:20000
Cons ci ratio: 2.565097e-02	ci left: 5.317110e-01	ci right 5.455777e-01	k: 10773	n:20000
KS ci ratio: 7.513209e-02	ci left: 1.152809e-01	ci right 1.243300e-01	k: 2395	n:20000
CORO2B   20000 perm   4 sec   (5453 perm/sec)   p_kst 1.197500e-01   p_cons 5.386500e-01   p_joint 2.047500e-01

Outputting figure to mutsig2_images.part000000000042/CORO2B.4_1491_20000_0.11975_0.53865_0.20475.png
                gene_name: CORO2B
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
CPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
CPA2   10000 perm   2 sec   (6442 perm/sec)   p_kst 6.791000e-01   p_cons 1.001000e-01   p_joint 3.547000e-01

Joint ci ratio: 4.070536e-02	ci left: 3.103047e-01	ci right 3.232486e-01	k: 6335	n:20000
Cons ci ratio: 7.848243e-02	ci left: 1.065308e-01	ci right 1.152827e-01	k: 2217	n:20000
KS ci ratio: 1.912564e-02	ci left: 6.709211e-01	ci right 6.839273e-01	k: 13549	n:20000
CPA2   20000 perm   3 sec   (5743 perm/sec)   p_kst 6.774500e-01   p_cons 1.108500e-01   p_joint 3.167500e-01

Outputting figure to mutsig2_images.part000000000042/CPA2.4_1304_20000_0.67745_0.11085_0.31675.png
                gene_name: CPA2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 54 percent done.
CPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
KS ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
CPA4   10000 perm   2 sec   (6021 perm/sec)   p_kst 8.435000e-01   p_cons 6.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPA4.4_1310_10000_0.8435_0.6048_1.png
                gene_name: CPA4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
Cons ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
KS ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
CPB2   10000 perm   2 sec   (6124 perm/sec)   p_kst 1.853000e-01   p_cons 7.641000e-01   p_joint 3.027000e-01

Outputting figure to mutsig2_images.part000000000042/CPB2.4_1316_10000_0.1853_0.7641_0.3027.png
                gene_name: CPB2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 57 percent done.
CPNE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
Cons ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
KS ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
CPNE5   10000 perm   2 sec   (5653 perm/sec)   p_kst 2.442000e-01   p_cons 4.999000e-01   p_joint 4.932000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE5.4_1866_10000_0.2442_0.4999_0.4932.png
                gene_name: CPNE5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 59 percent done.
CPNE6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
KS ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
CPNE6   10000 perm   2 sec   (5828 perm/sec)   p_kst 6.245000e-01   p_cons 4.959000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE6.4_1734_10000_0.6245_0.4959_1.png
                gene_name: CPNE6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
CPNE8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
CPNE8   10000 perm   2 sec   (5799 perm/sec)   p_kst 6.392000e-01   p_cons 7.597000e-01   p_joint 8.068000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE8.4_1775_10000_0.6392_0.7597_0.8068.png
                gene_name: CPNE8
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 62 percent done.
CPOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
CPOX   10000 perm   2 sec   (5968 perm/sec)   p_kst 6.243000e-01   p_cons 1.659000e-01   p_joint 4.293000e-01

Outputting figure to mutsig2_images.part000000000042/CPOX.4_1393_10000_0.6243_0.1659_0.4293.png
                gene_name: CPOX
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 64 percent done.
CPPED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
CPPED1   10000 perm   2 sec   (6159 perm/sec)   p_kst 2.976000e-01   p_cons 9.200000e-03   p_joint 7.500000e-03

Joint ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
Cons ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
KS ci ratio: 4.342370e-02	ci left: 2.831708e-01	ci right 2.957905e-01	k: 5789	n:20000
CPPED1   20000 perm   4 sec   (5463 perm/sec)   p_kst 2.894500e-01   p_cons 8.800000e-03   p_joint 3.515000e-02

Joint ci ratio: 1.282497e-01	ci left: 2.826008e-02	ci right 3.216494e-02	k: 905	n:30000
Cons ci ratio: 2.415802e-01	ci left: 7.648923e-03	ci right 9.781191e-03	k: 260	n:30000
KS ci ratio: 3.516737e-02	ci left: 2.876875e-01	ci right 2.980193e-01	k: 8785	n:30000
CPPED1   30000 perm   6 sec   (4893 perm/sec)   p_kst 2.928333e-01   p_cons 8.666667e-03   p_joint 3.016667e-02

Joint ci ratio: 1.066845e-01	ci left: 3.090553e-02	ci right 3.441275e-02	k: 1305	n:40000
Cons ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
KS ci ratio: 3.039653e-02	ci left: 2.891894e-01	ci right 2.981405e-01	k: 11746	n:40000
CPPED1   40000 perm   8 sec   (4845 perm/sec)   p_kst 2.936500e-01   p_cons 8.500000e-03   p_joint 3.262500e-02

Joint ci ratio: 1.076808e-01	ci left: 2.442796e-02	ci right 2.722746e-02	k: 1290	n:50000
Cons ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
KS ci ratio: 2.674936e-02	ci left: 2.964233e-01	ci right 3.044799e-01	k: 15022	n:50000
CPPED1   50000 perm   10 sec   (4790 perm/sec)   p_kst 3.004400e-01   p_cons 8.460000e-03   p_joint 2.580000e-02

Joint ci ratio: 1.030473e-01	ci left: 2.233514e-02	ci right 2.477791e-02	k: 1412	n:60000
Cons ci ratio: 1.747506e-01	ci left: 7.589587e-03	ci right 9.058568e-03	k: 498	n:60000
KS ci ratio: 2.446974e-02	ci left: 2.959029e-01	ci right 3.032499e-01	k: 17974	n:60000
CPPED1   60000 perm   13 sec   (4726 perm/sec)   p_kst 2.995667e-01   p_cons 8.300000e-03   p_joint 2.353333e-02

Joint ci ratio: 8.743255e-02	ci left: 2.669247e-02	ci right 2.914688e-02	k: 1953	n:70000
Cons ci ratio: 1.626588e-01	ci left: 7.558950e-03	ci right 8.910862e-03	k: 575	n:70000
KS ci ratio: 2.259982e-02	ci left: 2.971902e-01	ci right 3.039977e-01	k: 21041	n:70000
CPPED1   70000 perm   15 sec   (4660 perm/sec)   p_kst 3.005857e-01   p_cons 8.214286e-03   p_joint 2.790000e-02

Joint ci ratio: 7.767950e-02	ci left: 2.965033e-02	ci right 3.205885e-02	k: 2467	n:80000
Cons ci ratio: 1.520703e-01	ci left: 7.610775e-03	ci right 8.875277e-03	k: 658	n:80000
KS ci ratio: 2.114711e-02	ci left: 2.972742e-01	ci right 3.036403e-01	k: 24036	n:80000
CPPED1   80000 perm   17 sec   (4593 perm/sec)   p_kst 3.004500e-01   p_cons 8.225000e-03   p_joint 3.083750e-02

Joint ci ratio: 7.815937e-02	ci left: 2.612517e-02	ci right 2.826100e-02	k: 2446	n:90000
Cons ci ratio: 1.440978e-01	ci left: 7.567591e-03	ci right 8.753328e-03	k: 733	n:90000
KS ci ratio: 1.991275e-02	ci left: 2.979820e-01	ci right 3.039864e-01	k: 27088	n:90000
CPPED1   90000 perm   20 sec   (4524 perm/sec)   p_kst 3.009778e-01   p_cons 8.144444e-03   p_joint 2.717778e-02

Joint ci ratio: 7.132472e-02	ci left: 2.827324e-02	ci right 3.037418e-02	k: 2931	n:100000
Cons ci ratio: 1.376039e-01	ci left: 7.495799e-03	ci right 8.613018e-03	k: 804	n:100000
KS ci ratio: 1.883131e-02	ci left: 2.994643e-01	ci right 3.051672e-01	k: 30231	n:100000
CPPED1   100000 perm   22 sec   (4449 perm/sec)   p_kst 3.023100e-01   p_cons 8.040000e-03   p_joint 2.931000e-02

Joint ci ratio: 6.917653e-02	ci left: 2.738157e-02	ci right 2.935250e-02	k: 3119	n:110000
Cons ci ratio: 1.311629e-01	ci left: 7.525986e-03	ci right 8.591106e-03	k: 885	n:110000
KS ci ratio: 1.796780e-02	ci left: 2.992966e-01	ci right 3.047321e-01	k: 33221	n:110000
CPPED1   110000 perm   25 sec   (4373 perm/sec)   p_kst 3.020091e-01   p_cons 8.045455e-03   p_joint 2.835455e-02

Joint ci ratio: 7.206026e-02	ci left: 2.319872e-02	ci right 2.494105e-02	k: 2887	n:120000
Cons ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
KS ci ratio: 1.719715e-02	ci left: 2.995526e-01	ci right 3.047570e-01	k: 36258	n:120000
CPPED1   120000 perm   28 sec   (4295 perm/sec)   p_kst 3.021500e-01   p_cons 8.091667e-03   p_joint 2.405833e-02

Joint ci ratio: 6.215064e-02	ci left: 2.876870e-02	ci right 3.062159e-02	k: 3859	n:130000
Cons ci ratio: 1.199666e-01	ci left: 7.657214e-03	ci right 8.641838e-03	k: 1058	n:130000
KS ci ratio: 1.656344e-02	ci left: 2.986146e-01	ci right 3.036096e-01	k: 39144	n:130000
CPPED1   130000 perm   31 sec   (4229 perm/sec)   p_kst 3.011077e-01   p_cons 8.138462e-03   p_joint 2.968462e-02

Joint ci ratio: 7.708661e-02	ci left: 1.743613e-02	ci right 1.884107e-02	k: 2538	n:140000
Cons ci ratio: 1.138280e-01	ci left: 7.921620e-03	ci right 8.884621e-03	k: 1175	n:140000
KS ci ratio: 1.596422e-02	ci left: 2.986192e-01	ci right 3.034319e-01	k: 42143	n:140000
CPPED1   140000 perm   34 sec   (4173 perm/sec)   p_kst 3.010214e-01   p_cons 8.392857e-03   p_joint 1.812857e-02

Joint ci ratio: 7.501318e-02	ci left: 1.720885e-02	ci right 1.855655e-02	k: 2681	n:150000
Cons ci ratio: 1.094874e-01	ci left: 8.009180e-03	ci right 8.943302e-03	k: 1270	n:150000
KS ci ratio: 1.543446e-02	ci left: 2.983866e-01	ci right 3.030345e-01	k: 45106	n:150000
CPPED1   150000 perm   36 sec   (4119 perm/sec)   p_kst 3.007067e-01   p_cons 8.466667e-03   p_joint 1.787333e-02

Joint ci ratio: 7.359041e-02	ci left: 1.678335e-02	ci right 1.807172e-02	k: 2787	n:160000
Cons ci ratio: 1.056472e-01	ci left: 8.080318e-03	ci right 8.987626e-03	k: 1364	n:160000
KS ci ratio: 1.493307e-02	ci left: 2.987779e-01	ci right 3.032793e-01	k: 48164	n:160000
CPPED1   160000 perm   39 sec   (4063 perm/sec)   p_kst 3.010250e-01   p_cons 8.525000e-03   p_joint 1.741875e-02

Joint ci ratio: 7.265461e-02	ci left: 1.622325e-02	ci right 1.745213e-02	k: 2861	n:170000
Cons ci ratio: 1.024328e-01	ci left: 8.103458e-03	ci right 8.984013e-03	k: 1451	n:170000
KS ci ratio: 1.448241e-02	ci left: 2.989844e-01	ci right 3.033518e-01	k: 51198	n:170000
CPPED1   170000 perm   42 sec   (4005 perm/sec)   p_kst 3.011647e-01   p_cons 8.535294e-03   p_joint 1.682941e-02

Joint ci ratio: 7.043466e-02	ci left: 1.632047e-02	ci right 1.751739e-02	k: 3044	n:180000
Cons ci ratio: 9.936478e-02	ci left: 8.146073e-03	ci right 9.003200e-03	k: 1542	n:180000
KS ci ratio: 1.406021e-02	ci left: 2.994691e-01	ci right 3.037150e-01	k: 54286	n:180000
CPPED1   180000 perm   46 sec   (3947 perm/sec)   p_kst 3.015889e-01   p_cons 8.566667e-03   p_joint 1.691111e-02

Outputting figure to mutsig2_images.part000000000042/CPPED1.4_961_180000_0.30159_0.0085667_0.016911.png
                gene_name: CPPED1
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.0086 
      ci_cons_bounds_left: 0.0081 
     ci_cons_bounds_right: 0.0090 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 66 percent done.
CORO2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
Cons ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
KS ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
CORO2A   10000 perm   2 sec   (5164 perm/sec)   p_kst 1.411000e-01   p_cons 4.091000e-01   p_joint 4.525000e-01

Outputting figure to mutsig2_images.part000000000042/CORO2A.3_1622_10000_0.1411_0.4091_0.4525.png
                gene_name: CORO2A
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
CP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.138712e-02	ci left: 4.629738e-01	ci right 4.826420e-01	k: 4728	n:10000
Cons ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
KS ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
CP110   10000 perm   2 sec   (4586 perm/sec)   p_kst 3.745000e-01   p_cons 4.536000e-01   p_joint 4.728000e-01

Outputting figure to mutsig2_images.part000000000042/CP110.3_3028_10000_0.3745_0.4536_0.4728.png
                gene_name: CP110
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 70 percent done.
CPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
KS ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
CPD   10000 perm   2 sec   (5157 perm/sec)   p_kst 1.982000e-01   p_cons 7.669000e-01   p_joint 3.614000e-01

Outputting figure to mutsig2_images.part000000000042/CPD.3_4227_10000_0.1982_0.7669_0.3614.png
                gene_name: CPD
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
CPLX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
Cons ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
KS ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
CPLX2   10000 perm   2 sec   (6307 perm/sec)   p_kst 2.077000e-01   p_cons 4.789000e-01   p_joint 2.533000e-01

Outputting figure to mutsig2_images.part000000000042/CPLX2.3_417_10000_0.2077_0.4789_0.2533.png
                gene_name: CPLX2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 73 percent done.
CPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
Cons ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
KS ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
CPO   10000 perm   2 sec   (6367 perm/sec)   p_kst 8.160000e-02   p_cons 6.713000e-01   p_joint 2.140000e-01

Joint ci ratio: 6.371186e-02	ci left: 1.540556e-01	ci right 1.642437e-01	k: 3182	n:20000
Cons ci ratio: 1.930310e-02	ci left: 6.668507e-01	ci right 6.798989e-01	k: 13468	n:20000
KS ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
CPO   20000 perm   4 sec   (5593 perm/sec)   p_kst 8.405000e-02   p_cons 6.734000e-01   p_joint 1.591000e-01

Outputting figure to mutsig2_images.part000000000042/CPO.3_1161_20000_0.08405_0.6734_0.1591.png
                gene_name: CPO
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 75 percent done.
CPSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
CPSF3   10000 perm   2 sec   (5242 perm/sec)   p_kst 2.247000e-01   p_cons 3.070000e-02   p_joint 6.230000e-02

Joint ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 5.097547e-02	ci left: 2.223490e-01	ci right 2.340301e-01	k: 4563	n:20000
CPSF3   20000 perm   4 sec   (4945 perm/sec)   p_kst 2.281500e-01   p_cons 3.045000e-02   p_joint 9.545000e-02

Joint ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
Cons ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
KS ci ratio: 4.168455e-02	ci left: 2.228984e-01	ci right 2.324210e-01	k: 6829	n:30000
CPSF3   30000 perm   6 sec   (4735 perm/sec)   p_kst 2.276333e-01   p_cons 3.086667e-02   p_joint 5.136667e-02

Joint ci ratio: 8.845457e-02	ci left: 4.472617e-02	ci right 4.888994e-02	k: 1871	n:40000
Cons ci ratio: 1.094436e-01	ci left: 2.937180e-02	ci right 3.279672e-02	k: 1242	n:40000
KS ci ratio: 3.595343e-02	ci left: 2.249640e-01	ci right 2.332253e-01	k: 9163	n:40000
CPSF3   40000 perm   9 sec   (4694 perm/sec)   p_kst 2.290750e-01   p_cons 3.105000e-02   p_joint 4.677500e-02

Joint ci ratio: 7.909862e-02	ci left: 4.496505e-02	ci right 4.868779e-02	k: 2340	n:50000
Cons ci ratio: 9.897129e-02	ci left: 2.891245e-02	ci right 3.194239e-02	k: 1520	n:50000
KS ci ratio: 3.206156e-02	ci left: 2.264563e-01	ci right 2.338551e-01	k: 11507	n:50000
CPSF3   50000 perm   11 sec   (4634 perm/sec)   p_kst 2.301400e-01   p_cons 3.040000e-02   p_joint 4.680000e-02

Outputting figure to mutsig2_images.part000000000042/CPSF3.3_2127_50000_0.23014_0.0304_0.0468.png
                gene_name: CPSF3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 77 percent done.
CPSF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
Cons ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
KS ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
CPSF7   10000 perm   2 sec   (6034 perm/sec)   p_kst 1.547000e-01   p_cons 5.580000e-01   p_joint 2.991000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF7.3_1581_10000_0.1547_0.558_0.2991.png
                gene_name: CPSF7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 79 percent done.
CORO1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
CORO1A   10000 perm   2 sec   (6461 perm/sec)   p_kst 7.030000e-01   p_cons 6.471000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CORO1A.2_1426_10000_0.703_0.6471_1.png
                gene_name: CORO1A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CORO1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
KS ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
CORO1C   10000 perm   2 sec   (6450 perm/sec)   p_kst 6.232000e-01   p_cons 5.891000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000042/CORO1C.2_1465_10000_0.6232_0.5891_0.6701.png
                gene_name: CORO1C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 82 percent done.
CORO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
Cons ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
KS ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
CORO6   10000 perm   2 sec   (6480 perm/sec)   p_kst 4.485000e-01   p_cons 8.801000e-01   p_joint 6.509000e-01

Outputting figure to mutsig2_images.part000000000042/CORO6.2_1459_10000_0.4485_0.8801_0.6509.png
                gene_name: CORO6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 84 percent done.
COTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
Cons ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
KS ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
COTL1   10000 perm   1 sec   (7056 perm/sec)   p_kst 3.116000e-01   p_cons 4.280000e-02   p_joint 5.964000e-01

Joint ci ratio: 2.833023e-02	ci left: 4.820992e-01	ci right 4.960040e-01	k: 9781	n:20000
Cons ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
KS ci ratio: 4.106542e-02	ci left: 3.065262e-01	ci right 3.194282e-01	k: 6259	n:20000
COTL1   20000 perm   3 sec   (6192 perm/sec)   p_kst 3.129500e-01   p_cons 4.195000e-02   p_joint 4.890500e-01

Joint ci ratio: 2.313908e-02	ci left: 4.832281e-01	ci right 4.945740e-01	k: 14667	n:30000
Cons ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
KS ci ratio: 3.340288e-02	ci left: 3.093469e-01	ci right 3.198890e-01	k: 9438	n:30000
COTL1   30000 perm   5 sec   (5864 perm/sec)   p_kst 3.146000e-01   p_cons 4.156667e-02   p_joint 4.889000e-01

Joint ci ratio: 4.134406e-02	ci left: 1.796925e-01	ci right 1.873035e-01	k: 7339	n:40000
Cons ci ratio: 9.467098e-02	ci left: 3.915097e-02	ci right 4.306601e-02	k: 1643	n:40000
KS ci ratio: 2.894006e-02	ci left: 3.098762e-01	ci right 3.190008e-01	k: 12577	n:40000
COTL1   40000 perm   7 sec   (5646 perm/sec)   p_kst 3.144250e-01   p_cons 4.107500e-02   p_joint 1.834750e-01

Outputting figure to mutsig2_images.part000000000042/COTL1.2_445_40000_0.31443_0.041075_0.18347.png
                gene_name: COTL1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 86 percent done.
COX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
Cons ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
KS ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
COX15   10000 perm   1 sec   (6759 perm/sec)   p_kst 8.749000e-01   p_cons 7.852000e-01   p_joint 9.368000e-01

Outputting figure to mutsig2_images.part000000000042/COX15.2_1339_10000_0.8749_0.7852_0.9368.png
                gene_name: COX15
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 88 percent done.
COX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
Cons ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
COX18   10000 perm   2 sec   (6665 perm/sec)   p_kst 3.689000e-01   p_cons 1.291000e-01   p_joint 4.813000e-01

Joint ci ratio: 2.871269e-02	ci left: 4.754028e-01	ci right 4.893023e-01	k: 9647	n:20000
Cons ci ratio: 7.180058e-02	ci left: 1.250236e-01	ci right 1.343844e-01	k: 2593	n:20000
KS ci ratio: 3.607658e-02	ci left: 3.644487e-01	ci right 3.778888e-01	k: 7423	n:20000
COX18   20000 perm   3 sec   (5913 perm/sec)   p_kst 3.711500e-01   p_cons 1.296500e-01   p_joint 4.823500e-01

Outputting figure to mutsig2_images.part000000000042/COX18.2_1026_20000_0.37115_0.12965_0.48235.png
                gene_name: COX18
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 89 percent done.
CPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.944141e-02	ci left: 7.946610e-01	ci right 8.103624e-01	k: 8026	n:10000
KS ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
CPA6   10000 perm   1 sec   (6755 perm/sec)   p_kst 9.192000e-01   p_cons 8.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPA6.2_1358_10000_0.9192_0.8026_1.png
                gene_name: CPA6
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CPNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
KS ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
CPNE1   10000 perm   2 sec   (6360 perm/sec)   p_kst 9.912000e-01   p_cons 6.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE1.2_1693_10000_0.9912_0.6977_1.png
                gene_name: CPNE1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
CPNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
KS ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
CPNE2   10000 perm   2 sec   (6459 perm/sec)   p_kst 7.484000e-01   p_cons 3.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE2.2_1707_10000_0.7484_0.3591_1.png
                gene_name: CPNE2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CPSF3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
CPSF3L   10000 perm   2 sec   (6214 perm/sec)   p_kst 4.741000e-01   p_cons 4.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF3L.2_1871_10000_0.4741_0.4476_1.png
                gene_name: CPSF3L
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CPSF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.132368e-03	ci left: 9.730202e-01	ci right 9.790982e-01	k: 9762	n:10000
Cons ci ratio: 2.235422e-02	ci left: 7.460424e-01	ci right 7.630091e-01	k: 7546	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
CPSF4   10000 perm   1 sec   (7297 perm/sec)   p_kst 2.890000e-02   p_cons 7.546000e-01   p_joint 9.762000e-01

Joint ci ratio: 4.304143e-03	ci left: 9.743050e-01	ci right 9.785549e-01	k: 19530	n:20000
Cons ci ratio: 1.572584e-02	ci left: 7.504898e-01	ci right 7.624356e-01	k: 15130	n:20000
KS ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
CPSF4   20000 perm   3 sec   (6404 perm/sec)   p_kst 2.885000e-02   p_cons 7.565000e-01   p_joint 9.765000e-01

Joint ci ratio: 3.578886e-03	ci left: 9.738252e-01	ci right 9.773486e-01	k: 29269	n:30000
Cons ci ratio: 1.285870e-02	ci left: 7.510651e-01	ci right 7.608187e-01	k: 22679	n:30000
KS ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
CPSF4   30000 perm   5 sec   (6055 perm/sec)   p_kst 2.813333e-02   p_cons 7.559667e-01   p_joint 9.756333e-01

Joint ci ratio: 3.117328e-03	ci left: 9.737830e-01	ci right 9.768474e-01	k: 39014	n:40000
Cons ci ratio: 1.113723e-02	ci left: 7.516846e-01	ci right 7.601282e-01	k: 30237	n:40000
KS ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
CPSF4   40000 perm   7 sec   (5841 perm/sec)   p_kst 2.817500e-02   p_cons 7.559250e-01   p_joint 9.753500e-01

Joint ci ratio: 2.764124e-03	ci left: 9.743740e-01	ci right 9.770904e-01	k: 48788	n:50000
Cons ci ratio: 9.959961e-03	ci left: 7.521905e-01	ci right 7.597398e-01	k: 37799	n:50000
KS ci ratio: 1.030613e-01	ci left: 2.666892e-02	ci right 2.958621e-02	k: 1405	n:50000
CPSF4   50000 perm   9 sec   (5670 perm/sec)   p_kst 2.810000e-02   p_cons 7.559800e-01   p_joint 9.757600e-01

Joint ci ratio: 2.516550e-03	ci left: 9.746242e-01	ci right 9.770961e-01	k: 58553	n:60000
Cons ci ratio: 9.086741e-03	ci left: 7.527437e-01	ci right 7.596315e-01	k: 45372	n:60000
KS ci ratio: 9.417375e-02	ci left: 2.674336e-02	ci right 2.940256e-02	k: 1683	n:60000
CPSF4   60000 perm   11 sec   (5525 perm/sec)   p_kst 2.805000e-02   p_cons 7.562000e-01   p_joint 9.758833e-01

Outputting figure to mutsig2_images.part000000000042/CPSF4.2_842_60000_0.02805_0.7562_0.97588.png
                gene_name: CPSF4
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
CPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
Cons ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
KS ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
CPT2   10000 perm   2 sec   (6569 perm/sec)   p_kst 5.686000e-01   p_cons 2.369000e-01   p_joint 9.200000e-01

Outputting figure to mutsig2_images.part000000000042/CPT2.2_1997_10000_0.5686_0.2369_0.92.png
                gene_name: CPT2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000042
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 42 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4421848: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000043> was used as the working directory.
Started at Wed Oct 24 17:36:57 2012
Results reported at Wed Oct 24 17:57:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000043.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000043.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 43  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000043.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    869.64 sec.
    Max Memory :      5426 MB
    Max Swap   :      7755 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
43
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 43
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 43: processing genes 3801 - 3890
Calculating significance of each gene.
Using projection method.
3801	CRABP1	4.104036e-01
3802	CRABP2	3.253162e-01
3803	CRADD	1
3804	CRAMP1L	9.938442e-01
3805	CRAT	9.569746e-01
3806	CRB1	1.894124e-02
3807	CRB2	9.947619e-01
3808	CRB3	1
3809	CRBN	1
3810	CRCP	4.749592e-01
3811	CRCT1	1
3812	CREB1	1
3813	CREB3	1
3814	CREB3L1	8.437826e-01
3815	CREB3L2	2.868130e-01
3816	CREB3L3	1
3817	CREB3L4	8.974509e-01
3818	CREB5	1.426616e-01
3819	CREBBP	9.999541e-01
3820	CREBL2	1
3821	CREBZF	1
3822	CREG1	1
3823	CREG2	6.053155e-03
3824	CRELD1	9.231176e-01
3825	CRELD2	8.829139e-01
3826	CREM	1
3827	CRH	2.511261e-01
3828	CRHBP	2.886476e-01
3829	CRHR1	1
3830	CRHR2	1
3831	CRIM1	3.604933e-01
3832	CRIP1	1
3833	CRIP2	1
3834	CRIP3	2.659313e-01
In gene CRIPAK the following bins exceed PROBCAP:
    LUAD-44-6148-TP	categ 6	N = 1227    n = 1	mu =   1.00e-07
    LUAD-75-6205-TP	categ 6	N = 1227    n = 1	mu =   1.67e-07
3835	CRIPAK	1.376904e-05
3836	CRIPT	2.048347e-02
3837	CRISP1	5.652988e-04
3838	CRISP2	1
3839	CRISP3	7.612620e-01
3840	CRISPLD1	2.389420e-02
3841	CRISPLD2	5.616843e-01
3842	CRK	1
3843	CRKL	5.928611e-01
3844	CRLF1	3.648444e-01
3845	CRLF2	1
3846	CRLF3	9.317852e-01
3847	CRLS1	1
3848	CRMP1	6.695843e-01
3849	CRNKL1	4.672924e-01
3850	CRNN	1.285531e-03
3851	CROCC	9.990698e-01
3852	CROT	1.730013e-02
3853	CRP	4.300764e-03
3854	CRTAC1	1
3855	CRTAM	3.623112e-01
3856	CRTAP	7.563521e-01
3857	CRTC1	7.857406e-01
3858	CRTC2	8.967547e-01
3859	CRTC3	8.251009e-01
3860	CRX	2.321445e-01
3861	CRY1	6.938562e-01
3862	CRY2	8.831421e-01
3863	CRYAA	1
3864	CRYAB	6.069920e-01
3865	CRYBA1	1
3866	CRYBA2	1
3867	CRYBA4	1.736434e-02
3868	CRYBB1	1
3869	CRYBB2	3.441828e-01
3870	CRYBB3	1
3871	CRYBG3	1
3872	CRYGA	1.011302e-01
3873	CRYGB	1
3874	CRYGC	1.145305e-02
3875	CRYGD	1
3876	CRYGN	5.817248e-01
3877	CRYGS	1
3878	CRYL1	8.894129e-01
3879	CRYM	1
3880	CRYZ	7.412214e-01
3881	CRYZL1	6.547189e-01
3882	CS	9.475800e-01
3883	CSAD	4.032267e-01
3884	CSAG1	3.451540e-02
3885	CSDA	6.458090e-01
3886	CSDC2	1
3887	CSDE1	1.029865e-01
3888	CSE1L	9.083099e-01
3889	CSF1	9.110827e-01
3890	CSF1R	9.762184e-01
Done

Running MutSig 2:
Scatter job 43: processing genes 3801 - 3890
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
Cons ci ratio: 4.517048e-02	ci left: 4.197698e-01	ci right 4.392713e-01	k: 4295	n:10000
KS ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
CRB1   10000 perm   3 sec   (3139 perm/sec)   p_kst 6.690000e-02   p_cons 4.295000e-01   p_joint 1.418000e-01

Joint ci ratio: 6.910103e-02	ci left: 1.337898e-01	ci right 1.434155e-01	k: 2771	n:20000
Cons ci ratio: 3.124586e-02	ci left: 4.334541e-01	ci right 4.472633e-01	k: 8807	n:20000
KS ci ratio: 1.043980e-01	ci left: 6.240220e-02	ci right 6.932467e-02	k: 1316	n:20000
CRB1   20000 perm   9 sec   (2224 perm/sec)   p_kst 6.580000e-02   p_cons 4.403500e-01   p_joint 1.385500e-01

Joint ci ratio: 6.034818e-02	ci left: 1.195666e-01	ci right 1.270399e-01	k: 3698	n:30000
Cons ci ratio: 2.555519e-02	ci left: 4.339063e-01	ci right 4.451720e-01	k: 13186	n:30000
KS ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
CRB1   30000 perm   12 sec   (2539 perm/sec)   p_kst 6.676667e-02   p_cons 4.395333e-01   p_joint 1.232667e-01

Outputting figure to mutsig2_images.part000000000043/CRB1.25_4269_30000_0.066767_0.43953_0.12327.png
                gene_name: CRB1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
CRIPAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
CRIPAK   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.090000e-02   p_cons 1.958000e-01   p_joint 3.910000e-02

Joint ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
Cons ci ratio: 5.566270e-02	ci left: 1.931396e-01	ci right 2.042482e-01	k: 3973	n:20000
KS ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
CRIPAK   20000 perm   4 sec   (5306 perm/sec)   p_kst 2.955000e-02   p_cons 1.986500e-01   p_joint 3.645000e-02

Joint ci ratio: 8.110916e-02	ci left: 6.929611e-02	ci right 7.518706e-02	k: 2166	n:30000
Cons ci ratio: 4.424301e-02	ci left: 2.027908e-01	ci right 2.119992e-01	k: 6221	n:30000
KS ci ratio: 1.309572e-01	ci left: 2.709791e-02	ci right 3.092736e-02	k: 869	n:30000
CRIPAK   30000 perm   6 sec   (5057 perm/sec)   p_kst 2.896667e-02   p_cons 2.073667e-01   p_joint 7.220000e-02

Joint ci ratio: 8.492071e-02	ci left: 4.842328e-02	ci right 5.274227e-02	k: 2022	n:40000
Cons ci ratio: 3.832147e-02	ci left: 2.033611e-01	ci right 2.113314e-01	k: 8293	n:40000
KS ci ratio: 1.119792e-01	ci left: 2.805811e-02	ci right 3.141062e-02	k: 1188	n:40000
CRIPAK   40000 perm   8 sec   (4883 perm/sec)   p_kst 2.970000e-02   p_cons 2.073250e-01   p_joint 5.055000e-02

Joint ci ratio: 8.519664e-02	ci left: 3.888680e-02	ci right 4.236679e-02	k: 2030	n:50000
Cons ci ratio: 3.419780e-02	ci left: 2.045289e-01	ci right 2.116650e-01	k: 10404	n:50000
KS ci ratio: 9.992388e-02	ci left: 2.836598e-02	ci right 3.136893e-02	k: 1492	n:50000
CRIPAK   50000 perm   11 sec   (4754 perm/sec)   p_kst 2.984000e-02   p_cons 2.080800e-01   p_joint 4.060000e-02

Outputting figure to mutsig2_images.part000000000043/CRIPAK.16_1345_50000_0.02984_0.20808_0.0406.png
                gene_name: CRIPAK
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 4 percent done.
CRNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 3.781548e-02	ci left: 5.080524e-01	ci right 5.277371e-01	k: 5179	n:10000
KS ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
CRNN   10000 perm   2 sec   (6033 perm/sec)   p_kst 1.506000e-01   p_cons 5.179000e-01   p_joint 2.061000e-01

Outputting figure to mutsig2_images.part000000000043/CRNN.12_1496_10000_0.1506_0.5179_0.2061.png
                gene_name: CRNN
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 7 percent done.
CSDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
KS ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
CSDE1   10000 perm   2 sec   (4995 perm/sec)   p_kst 4.499000e-01   p_cons 7.860000e-02   p_joint 1.692000e-01

Joint ci ratio: 5.888196e-02	ci left: 1.760316e-01	ci right 1.867612e-01	k: 3627	n:20000
Cons ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
KS ci ratio: 3.052411e-02	ci left: 4.449850e-01	ci right 4.588290e-01	k: 9038	n:20000
CSDE1   20000 perm   4 sec   (4569 perm/sec)   p_kst 4.519000e-01   p_cons 7.870000e-02   p_joint 1.813500e-01

Outputting figure to mutsig2_images.part000000000043/CSDE1.12_2611_20000_0.4519_0.0787_0.18135.png
                gene_name: CSDE1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
CRISPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
KS ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
CRISPLD1   10000 perm   2 sec   (5674 perm/sec)   p_kst 1.976000e-01   p_cons 2.972000e-01   p_joint 2.702000e-01

Outputting figure to mutsig2_images.part000000000043/CRISPLD1.10_1559_10000_0.1976_0.2972_0.2702.png
                gene_name: CRISPLD1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
CRIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
Cons ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
KS ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
CRIM1   10000 perm   2 sec   (5523 perm/sec)   p_kst 2.480000e-01   p_cons 6.530000e-02   p_joint 8.870000e-02

Joint ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
Cons ci ratio: 1.038922e-01	ci left: 6.298759e-02	ci right 6.993910e-02	k: 1328	n:20000
KS ci ratio: 4.776125e-02	ci left: 2.458951e-01	ci right 2.579771e-01	k: 5038	n:20000
CRIM1   20000 perm   4 sec   (5031 perm/sec)   p_kst 2.519000e-01   p_cons 6.640000e-02   p_joint 1.509500e-01

Joint ci ratio: 6.930307e-02	ci left: 9.301715e-02	ci right 9.972792e-02	k: 2890	n:30000
Cons ci ratio: 8.409629e-02	ci left: 6.468633e-02	ci right 7.039777e-02	k: 2025	n:30000
KS ci ratio: 3.875198e-02	ci left: 2.493796e-01	ci right 2.592680e-01	k: 7629	n:30000
CRIM1   30000 perm   6 sec   (4796 perm/sec)   p_kst 2.543000e-01   p_cons 6.750000e-02   p_joint 9.633333e-02

Outputting figure to mutsig2_images.part000000000043/CRIM1.9_3179_30000_0.2543_0.0675_0.096333.png
                gene_name: CRIM1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 13 percent done.
CROT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
Cons ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
KS ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
CROT   10000 perm   2 sec   (5897 perm/sec)   p_kst 1.360000e-02   p_cons 4.806000e-01   p_joint 4.160000e-02

Joint ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
Cons ci ratio: 2.868109e-02	ci left: 4.759524e-01	ci right 4.898525e-01	k: 9658	n:20000
KS ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
CROT   20000 perm   4 sec   (5331 perm/sec)   p_kst 1.360000e-02   p_cons 4.829000e-01   p_joint 2.800000e-02

Joint ci ratio: 1.238102e-01	ci left: 3.032813e-02	ci right 3.436310e-02	k: 969	n:30000
Cons ci ratio: 2.347967e-02	ci left: 4.759312e-01	ci right 4.872723e-01	k: 14448	n:30000
KS ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
CROT   30000 perm   6 sec   (5110 perm/sec)   p_kst 1.483333e-02   p_cons 4.816000e-01   p_joint 3.230000e-02

Joint ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
Cons ci ratio: 1.972313e-02	ci left: 4.919381e-01	ci right 5.017624e-01	k: 19874	n:40000
KS ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
CROT   40000 perm   8 sec   (4875 perm/sec)   p_kst 1.460000e-02   p_cons 4.968500e-01   p_joint 2.530000e-02

Joint ci ratio: 1.012600e-01	ci left: 2.762456e-02	ci right 3.059045e-02	k: 1454	n:50000
Cons ci ratio: 1.765762e-02	ci left: 4.919878e-01	ci right 5.007726e-01	k: 24819	n:50000
KS ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
CROT   50000 perm   10 sec   (4781 perm/sec)   p_kst 1.458000e-02   p_cons 4.963800e-01   p_joint 2.908000e-02

Joint ci ratio: 8.804133e-02	ci left: 3.057345e-02	ci right 3.340539e-02	k: 1918	n:60000
Cons ci ratio: 1.611212e-02	ci left: 4.925912e-01	ci right 5.006091e-01	k: 29796	n:60000
KS ci ratio: 1.304195e-01	ci left: 1.386512e-02	ci right 1.581555e-02	k: 889	n:60000
CROT   60000 perm   13 sec   (4696 perm/sec)   p_kst 1.481667e-02   p_cons 4.966000e-01   p_joint 3.196667e-02

Joint ci ratio: 8.171499e-02	ci left: 3.052644e-02	ci right 3.314113e-02	k: 2227	n:70000
Cons ci ratio: 1.491272e-02	ci left: 4.930320e-01	ci right 5.004540e-01	k: 34772	n:70000
KS ci ratio: 1.219630e-01	ci left: 1.365519e-02	ci right 1.544253e-02	k: 1017	n:70000
CROT   70000 perm   15 sec   (4620 perm/sec)   p_kst 1.452857e-02   p_cons 4.967429e-01   p_joint 3.181429e-02

Joint ci ratio: 7.490578e-02	ci left: 3.185876e-02	ci right 3.435025e-02	k: 2647	n:80000
Cons ci ratio: 1.394732e-02	ci left: 4.933542e-01	ci right 5.002960e-01	k: 39746	n:80000
KS ci ratio: 1.141572e-01	ci left: 1.369519e-02	ci right 1.536529e-02	k: 1161	n:80000
CROT   80000 perm   18 sec   (4545 perm/sec)   p_kst 1.451250e-02   p_cons 4.968250e-01   p_joint 3.308750e-02

Joint ci ratio: 7.432821e-02	ci left: 2.886240e-02	ci right 3.110137e-02	k: 2697	n:90000
Cons ci ratio: 1.316204e-02	ci left: 4.930836e-01	ci right 4.996277e-01	k: 44672	n:90000
KS ci ratio: 1.071409e-01	ci left: 1.386976e-02	ci right 1.545064e-02	k: 1318	n:90000
CROT   90000 perm   20 sec   (4472 perm/sec)   p_kst 1.464444e-02   p_cons 4.963556e-01   p_joint 2.996667e-02

Joint ci ratio: 7.246572e-02	ci left: 2.739878e-02	ci right 2.946869e-02	k: 2842	n:100000
Cons ci ratio: 1.245384e-02	ci left: 4.945662e-01	ci right 5.007740e-01	k: 49767	n:100000
KS ci ratio: 1.021947e-01	ci left: 1.375846e-02	ci right 1.524990e-02	k: 1449	n:100000
CROT   100000 perm   23 sec   (4407 perm/sec)   p_kst 1.449000e-02   p_cons 4.976700e-01   p_joint 2.842000e-02

Joint ci ratio: 6.744949e-02	ci left: 2.878516e-02	ci right 3.080337e-02	k: 3276	n:110000
Cons ci ratio: 1.187660e-02	ci left: 4.946136e-01	ci right 5.005320e-01	k: 54733	n:110000
KS ci ratio: 9.778155e-02	ci left: 1.369539e-02	ci right 1.511220e-02	k: 1583	n:110000
CROT   110000 perm   25 sec   (4339 perm/sec)   p_kst 1.439091e-02   p_cons 4.975727e-01   p_joint 2.978182e-02

Outputting figure to mutsig2_images.part000000000043/CROT.9_1991_110000_0.014391_0.49757_0.029782.png
                gene_name: CROT
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 15 percent done.
CRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
CRP   10000 perm   2 sec   (6597 perm/sec)   p_kst 5.008000e-01   p_cons 3.999000e-01   p_joint 5.363000e-01

Outputting figure to mutsig2_images.part000000000043/CRP.8_683_10000_0.5008_0.3999_0.5363.png
                gene_name: CRP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
CREB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
Cons ci ratio: 2.835287e-02	ci left: 6.470981e-01	ci right 6.658107e-01	k: 6565	n:10000
KS ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
CREB5   10000 perm   2 sec   (6272 perm/sec)   p_kst 6.352000e-01   p_cons 6.565000e-01   p_joint 9.533000e-01

Outputting figure to mutsig2_images.part000000000043/CREB5.7_1622_10000_0.6352_0.6565_0.9533.png
                gene_name: CREB5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 20 percent done.
CRISP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 5.309370e-02	ci left: 3.433291e-01	ci right 3.621567e-01	k: 3527	n:10000
KS ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
CRISP1   10000 perm   1 sec   (6874 perm/sec)   p_kst 6.028000e-01   p_cons 3.527000e-01   p_joint 8.611000e-01

Outputting figure to mutsig2_images.part000000000043/CRISP1.6_778_10000_0.6028_0.3527_0.8611.png
                gene_name: CRISP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 22 percent done.
CRNKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
Cons ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
KS ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
CRNKL1   10000 perm   2 sec   (5241 perm/sec)   p_kst 4.027000e-01   p_cons 4.200000e-03   p_joint 5.780000e-02

Joint ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
Cons ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
KS ci ratio: 3.348268e-02	ci left: 3.997814e-01	ci right 4.134457e-01	k: 8132	n:20000
CRNKL1   20000 perm   4 sec   (4798 perm/sec)   p_kst 4.066000e-01   p_cons 4.000000e-03   p_joint 5.240000e-02

Joint ci ratio: 1.115033e-01	ci left: 3.735635e-02	ci right 4.180005e-02	k: 1186	n:30000
Cons ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
KS ci ratio: 2.763423e-02	ci left: 3.958795e-01	ci right 4.070062e-01	k: 12043	n:30000
CRNKL1   30000 perm   7 sec   (4614 perm/sec)   p_kst 4.014333e-01   p_cons 3.900000e-03   p_joint 3.953333e-02

Joint ci ratio: 9.818026e-02	ci left: 3.644030e-02	ci right 4.022710e-02	k: 1532	n:40000
Cons ci ratio: 3.152700e-01	ci left: 3.243834e-03	ci right 4.479913e-03	k: 153	n:40000
KS ci ratio: 2.388301e-02	ci left: 3.976140e-01	ci right 4.072501e-01	k: 16097	n:40000
CRNKL1   40000 perm   9 sec   (4517 perm/sec)   p_kst 4.024250e-01   p_cons 3.825000e-03   p_joint 3.830000e-02

Joint ci ratio: 7.686838e-02	ci left: 4.753640e-02	ci right 5.135613e-02	k: 2471	n:50000
Cons ci ratio: 2.808903e-01	ci left: 3.335453e-03	ci right 4.443372e-03	k: 193	n:50000
KS ci ratio: 2.134163e-02	ci left: 3.985766e-01	ci right 4.071947e-01	k: 20144	n:50000
CRNKL1   50000 perm   11 sec   (4433 perm/sec)   p_kst 4.028800e-01   p_cons 3.860000e-03   p_joint 4.942000e-02

Joint ci ratio: 5.813039e-02	ci left: 6.839842e-02	ci right 7.250992e-02	k: 4226	n:60000
Cons ci ratio: 2.464156e-01	ci left: 3.682661e-03	ci right 4.732854e-03	k: 251	n:60000
KS ci ratio: 1.949902e-02	ci left: 3.985392e-01	ci right 4.064035e-01	k: 24148	n:60000
CRNKL1   60000 perm   14 sec   (4354 perm/sec)   p_kst 4.024667e-01   p_cons 4.183333e-03   p_joint 7.043333e-02

Joint ci ratio: 5.573601e-02	ci left: 6.415751e-02	ci right 6.785000e-02	k: 4619	n:70000
Cons ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
KS ci ratio: 1.806804e-02	ci left: 3.984219e-01	ci right 4.057005e-01	k: 28144	n:70000
CRNKL1   70000 perm   16 sec   (4282 perm/sec)   p_kst 4.020571e-01   p_cons 4.071429e-03   p_joint 6.598571e-02

Joint ci ratio: 5.481386e-02	ci left: 5.843809e-02	ci right 6.174390e-02	k: 4806	n:80000
Cons ci ratio: 2.186946e-01	ci left: 3.562618e-03	ci right 4.448948e-03	k: 319	n:80000
KS ci ratio: 1.689044e-02	ci left: 3.989618e-01	ci right 4.057703e-01	k: 32189	n:80000
CRNKL1   80000 perm   19 sec   (4214 perm/sec)   p_kst 4.023625e-01   p_cons 3.987500e-03   p_joint 6.007500e-02

Joint ci ratio: 4.882540e-02	ci left: 6.519921e-02	ci right 6.847322e-02	k: 6014	n:90000
Cons ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
KS ci ratio: 1.592252e-02	ci left: 3.992161e-01	ci right 4.056347e-01	k: 36218	n:90000
CRNKL1   90000 perm   22 sec   (4147 perm/sec)   p_kst 4.024222e-01   p_cons 4.022222e-03   p_joint 6.682222e-02

Joint ci ratio: 4.062406e-02	ci left: 8.344699e-02	ci right 8.691712e-02	k: 8517	n:100000
Cons ci ratio: 1.963473e-01	ci left: 3.580192e-03	ci right 4.369007e-03	k: 396	n:100000
KS ci ratio: 1.517769e-02	ci left: 3.970914e-01	ci right 4.031744e-01	k: 40013	n:100000
CRNKL1   100000 perm   24 sec   (4087 perm/sec)   p_kst 4.001300e-01   p_cons 3.960000e-03   p_joint 8.517000e-02

Joint ci ratio: 3.999939e-02	ci left: 7.869157e-02	ci right 8.191241e-02	k: 8832	n:110000
Cons ci ratio: 1.860796e-01	ci left: 3.644249e-03	ci right 4.400452e-03	k: 441	n:110000
KS ci ratio: 1.447832e-02	ci left: 3.970032e-01	ci right 4.028021e-01	k: 43989	n:110000
CRNKL1   110000 perm   27 sec   (4032 perm/sec)   p_kst 3.999000e-01   p_cons 4.009091e-03   p_joint 8.029091e-02

Joint ci ratio: 3.977164e-02	ci left: 7.340027e-02	ci right 7.638698e-02	k: 8986	n:120000
Cons ci ratio: 1.783773e-01	ci left: 3.650742e-03	ci right 4.373552e-03	k: 480	n:120000
KS ci ratio: 1.385426e-02	ci left: 3.973929e-01	ci right 4.029452e-01	k: 48020	n:120000
CRNKL1   120000 perm   30 sec   (3976 perm/sec)   p_kst 4.001667e-01   p_cons 4.000000e-03   p_joint 7.488333e-02

Joint ci ratio: 3.653407e-02	ci left: 7.986565e-02	ci right 8.284536e-02	k: 10575	n:130000
Cons ci ratio: 1.715586e-01	ci left: 3.656782e-03	ci right 4.350246e-03	k: 519	n:130000
KS ci ratio: 1.333290e-02	ci left: 3.967053e-01	ci right 4.020377e-01	k: 51918	n:130000
CRNKL1   130000 perm   33 sec   (3921 perm/sec)   p_kst 3.993692e-01   p_cons 3.992308e-03   p_joint 8.134615e-02

Joint ci ratio: 3.370594e-02	ci left: 8.661316e-02	ci right 8.958964e-02	k: 12333	n:140000
Cons ci ratio: 1.635677e-01	ci left: 3.751457e-03	ci right 4.426480e-03	k: 571	n:140000
KS ci ratio: 1.285972e-02	ci left: 3.963621e-01	ci right 4.014993e-01	k: 55850	n:140000
CRNKL1   140000 perm   36 sec   (3868 perm/sec)   p_kst 3.989286e-01   p_cons 4.078571e-03   p_joint 8.809286e-02

Joint ci ratio: 3.127937e-02	ci left: 9.329558e-02	ci right 9.626677e-02	k: 14216	n:150000
Cons ci ratio: 1.572322e-01	ci left: 3.802127e-03	ci right 4.457269e-03	k: 618	n:150000
KS ci ratio: 1.242736e-02	ci left: 3.963074e-01	ci right 4.012699e-01	k: 59818	n:150000
CRNKL1   150000 perm   39 sec   (3817 perm/sec)   p_kst 3.987867e-01   p_cons 4.120000e-03   p_joint 9.477333e-02

Joint ci ratio: 3.034008e-02	ci left: 9.303986e-02	ci right 9.591236e-02	k: 15115	n:160000
Cons ci ratio: 1.530876e-01	ci left: 3.768739e-03	ci right 4.399440e-03	k: 652	n:160000
KS ci ratio: 1.202191e-02	ci left: 3.968178e-01	ci right 4.016234e-01	k: 63875	n:160000
CRNKL1   160000 perm   42 sec   (3771 perm/sec)   p_kst 3.992188e-01   p_cons 4.075000e-03   p_joint 9.446875e-02

Joint ci ratio: 3.484006e-02	ci left: 6.809717e-02	ci right 7.051755e-02	k: 11781	n:170000
Cons ci ratio: 1.491454e-01	ci left: 3.745143e-03	ci right 4.354315e-03	k: 687	n:170000
KS ci ratio: 1.114936e-02	ci left: 4.186573e-01	ci right 4.233571e-01	k: 71571	n:170000
CRNKL1   170000 perm   46 sec   (3727 perm/sec)   p_kst 4.210059e-01   p_cons 4.041176e-03   p_joint 6.930000e-02

Joint ci ratio: 3.717532e-02	ci left: 5.709524e-02	ci right 5.926346e-02	k: 10471	n:180000
Cons ci ratio: 1.465137e-01	ci left: 3.670820e-03	ci right 4.256445e-03	k: 712	n:180000
KS ci ratio: 1.084266e-02	ci left: 4.183902e-01	ci right 4.229568e-01	k: 75721	n:180000
CRNKL1   180000 perm   49 sec   (3681 perm/sec)   p_kst 4.206722e-01   p_cons 3.955556e-03   p_joint 5.817222e-02

Joint ci ratio: 3.207565e-02	ci left: 7.170881e-02	ci right 7.405161e-02	k: 13846	n:190000
Cons ci ratio: 1.434321e-01	ci left: 3.634854e-03	ci right 4.201500e-03	k: 743	n:190000
KS ci ratio: 1.064271e-02	ci left: 4.143556e-01	ci right 4.187943e-01	k: 79149	n:190000
CRNKL1   190000 perm   52 sec   (3635 perm/sec)   p_kst 4.165737e-01   p_cons 3.910526e-03   p_joint 7.287368e-02

Joint ci ratio: 3.193836e-02	ci left: 6.892523e-02	ci right 7.116725e-02	k: 14008	n:200000
Cons ci ratio: 1.410864e-01	ci left: 3.573654e-03	ci right 4.120881e-03	k: 768	n:200000
KS ci ratio: 1.044190e-02	ci left: 4.112106e-01	ci right 4.155319e-01	k: 82674	n:200000
CRNKL1   200000 perm   56 sec   (3589 perm/sec)   p_kst 4.133700e-01   p_cons 3.840000e-03   p_joint 7.004000e-02

Joint ci ratio: 3.083016e-02	ci left: 7.037790e-02	ci right 7.258633e-02	k: 15010	n:210000
Cons ci ratio: 1.362912e-01	ci left: 3.656309e-03	ci right 4.195621e-03	k: 823	n:210000
KS ci ratio: 1.018943e-02	ci left: 4.113022e-01	ci right 4.155193e-01	k: 86816	n:210000
CRNKL1   210000 perm   59 sec   (3545 perm/sec)   p_kst 4.134095e-01   p_cons 3.919048e-03   p_joint 7.147619e-02

Joint ci ratio: 3.016454e-02	ci left: 7.021456e-02	ci right 7.236947e-02	k: 15683	n:220000
Cons ci ratio: 1.337216e-01	ci left: 3.630652e-03	ci right 4.155280e-03	k: 855	n:220000
KS ci ratio: 9.960304e-03	ci left: 4.111004e-01	ci right 4.152201e-01	k: 90895	n:220000
CRNKL1   220000 perm   63 sec   (3467 perm/sec)   p_kst 4.131591e-01   p_cons 3.886364e-03   p_joint 7.128636e-02

Joint ci ratio: 2.939154e-02	ci left: 7.073092e-02	ci right 7.284511e-02	k: 16510	n:230000
Cons ci ratio: 1.304833e-01	ci left: 3.653579e-03	ci right 4.167743e-03	k: 898	n:230000
KS ci ratio: 9.745356e-03	ci left: 4.109476e-01	ci right 4.149763e-01	k: 94981	n:230000
CRNKL1   230000 perm   67 sec   (3416 perm/sec)   p_kst 4.129609e-01   p_cons 3.904348e-03   p_joint 7.178261e-02

Joint ci ratio: 2.831573e-02	ci left: 7.290197e-02	ci right 7.500000e-02	k: 17747	n:240000
Cons ci ratio: 1.274693e-01	ci left: 3.674735e-03	ci right 4.179029e-03	k: 941	n:240000
KS ci ratio: 9.538581e-03	ci left: 4.110707e-01	ci right 4.150147e-01	k: 99130	n:240000
CRNKL1   240000 perm   71 sec   (3369 perm/sec)   p_kst 4.130417e-01   p_cons 3.920833e-03   p_joint 7.394583e-02

Joint ci ratio: 2.785402e-02	ci left: 7.238464e-02	ci right 7.443327e-02	k: 18351	n:250000
Cons ci ratio: 1.248461e-01	ci left: 3.682697e-03	ci right 4.176913e-03	k: 981	n:250000
KS ci ratio: 9.350988e-03	ci left: 4.108451e-01	ci right 4.147089e-01	k: 103194	n:250000
CRNKL1   250000 perm   75 sec   (3322 perm/sec)   p_kst 4.127760e-01   p_cons 3.924000e-03   p_joint 7.340400e-02

Joint ci ratio: 2.804552e-02	ci left: 6.890750e-02	ci right 7.087133e-02	k: 18170	n:260000
Cons ci ratio: 1.225591e-01	ci left: 3.678958e-03	ci right 4.162972e-03	k: 1018	n:260000
KS ci ratio: 9.167492e-03	ci left: 4.109835e-01	ci right 4.147723e-01	k: 107348	n:260000
CRNKL1   260000 perm   82 sec   (3190 perm/sec)   p_kst 4.128769e-01   p_cons 3.915385e-03   p_joint 6.988462e-02

Joint ci ratio: 2.663624e-02	ci left: 7.326932e-02	ci right 7.525094e-02	k: 20049	n:270000
Cons ci ratio: 1.204506e-01	ci left: 3.671981e-03	ci right 4.146173e-03	k: 1054	n:270000
KS ci ratio: 8.998721e-03	ci left: 4.108791e-01	ci right 4.145968e-01	k: 111439	n:270000
CRNKL1   270000 perm   90 sec   (3000 perm/sec)   p_kst 4.127370e-01   p_cons 3.903704e-03   p_joint 7.425556e-02

Joint ci ratio: 2.609639e-02	ci left: 7.360102e-02	ci right 7.555066e-02	k: 20880	n:280000
Cons ci ratio: 1.180677e-01	ci left: 3.689831e-03	ci right 4.156244e-03	k: 1097	n:280000
KS ci ratio: 8.838548e-03	ci left: 4.108042e-01	ci right 4.144548e-01	k: 115536	n:280000
CRNKL1   280000 perm   98 sec   (2843 perm/sec)   p_kst 4.126286e-01   p_cons 3.917857e-03   p_joint 7.457143e-02

Joint ci ratio: 2.472976e-02	ci left: 7.874764e-02	ci right 8.072284e-02	k: 23122	n:290000
Cons ci ratio: 1.161277e-01	ci left: 3.686444e-03	ci right 4.144247e-03	k: 1134	n:290000
KS ci ratio: 8.682742e-03	ci left: 4.109521e-01	ci right 4.145393e-01	k: 119696	n:290000
CRNKL1   290000 perm   107 sec   (2702 perm/sec)   p_kst 4.127448e-01   p_cons 3.910345e-03   p_joint 7.973103e-02

Joint ci ratio: 2.508422e-02	ci left: 7.433168e-02	ci right 7.622320e-02	k: 22582	n:300000
Cons ci ratio: 1.137940e-01	ci left: 3.715727e-03	ci right 4.167272e-03	k: 1181	n:300000
KS ci ratio: 8.538945e-03	ci left: 4.108609e-01	ci right 4.143875e-01	k: 123787	n:300000
CRNKL1   300000 perm   116 sec   (2582 perm/sec)   p_kst 4.126233e-01   p_cons 3.936667e-03   p_joint 7.527333e-02

Joint ci ratio: 2.477390e-02	ci left: 7.380254e-02	ci right 7.565703e-02	k: 23165	n:310000
Cons ci ratio: 1.113683e-01	ci left: 3.758888e-03	ci right 4.205302e-03	k: 1233	n:310000
KS ci ratio: 8.397646e-03	ci left: 4.110306e-01	ci right 4.145000e-01	k: 127957	n:310000
CRNKL1   310000 perm   125 sec   (2475 perm/sec)   p_kst 4.127645e-01   p_cons 3.977419e-03   p_joint 7.472581e-02

Joint ci ratio: 2.437564e-02	ci left: 7.386285e-02	ci right 7.568860e-02	k: 23927	n:320000
Cons ci ratio: 1.096060e-01	ci left: 3.762969e-03	ci right 4.202338e-03	k: 1273	n:320000
KS ci ratio: 8.261326e-03	ci left: 4.112964e-01	ci right 4.147114e-01	k: 132161	n:320000
CRNKL1   320000 perm   134 sec   (2381 perm/sec)   p_kst 4.130031e-01   p_cons 3.978125e-03   p_joint 7.477188e-02

Joint ci ratio: 2.394622e-02	ci left: 7.420603e-02	ci right 7.600750e-02	k: 24784	n:330000
Cons ci ratio: 1.077193e-01	ci left: 3.781599e-03	ci right 4.215061e-03	k: 1318	n:330000
KS ci ratio: 8.131180e-03	ci left: 4.115616e-01	ci right 4.149247e-01	k: 136370	n:330000
CRNKL1   330000 perm   141 sec   (2338 perm/sec)   p_kst 4.132424e-01   p_cons 3.993939e-03   p_joint 7.510303e-02

Joint ci ratio: 2.358000e-02	ci left: 7.428648e-02	ci right 7.606195e-02	k: 25558	n:340000
Cons ci ratio: 1.060438e-01	ci left: 3.790604e-03	ci right 4.217918e-03	k: 1360	n:340000
KS ci ratio: 8.009033e-03	ci left: 4.116882e-01	ci right 4.150015e-01	k: 140537	n:340000
CRNKL1   340000 perm   147 sec   (2307 perm/sec)   p_kst 4.133441e-01   p_cons 4.000000e-03   p_joint 7.517059e-02

Joint ci ratio: 2.387599e-02	ci left: 7.065420e-02	ci right 7.236433e-02	k: 25027	n:350000
Cons ci ratio: 1.040725e-01	ci left: 3.826972e-03	ci right 4.249876e-03	k: 1412	n:350000
KS ci ratio: 7.891625e-03	ci left: 4.118450e-01	ci right 4.151108e-01	k: 144717	n:350000
CRNKL1   350000 perm   154 sec   (2277 perm/sec)   p_kst 4.134771e-01   p_cons 4.034286e-03   p_joint 7.150571e-02

Joint ci ratio: 2.155980e-02	ci left: 8.319812e-02	ci right 8.501414e-02	k: 30277	n:360000
Cons ci ratio: 1.024885e-01	ci left: 3.839734e-03	ci right 4.257201e-03	k: 1456	n:360000
KS ci ratio: 7.785652e-03	ci left: 4.115936e-01	ci right 4.148134e-01	k: 148753	n:360000
CRNKL1   360000 perm   159 sec   (2268 perm/sec)   p_kst 4.132028e-01   p_cons 4.044444e-03   p_joint 8.410278e-02

Joint ci ratio: 2.195995e-02	ci left: 7.842054e-02	ci right 8.016443e-02	k: 29337	n:370000
Cons ci ratio: 1.008398e-01	ci left: 3.862390e-03	ci right 4.275166e-03	k: 1504	n:370000
KS ci ratio: 7.680107e-03	ci left: 4.115911e-01	ci right 4.147670e-01	k: 152876	n:370000
CRNKL1   370000 perm   164 sec   (2261 perm/sec)   p_kst 4.131784e-01   p_cons 4.064865e-03   p_joint 7.928919e-02

Joint ci ratio: 2.261363e-02	ci left: 7.245233e-02	ci right 7.411207e-02	k: 27846	n:380000
Cons ci ratio: 9.923621e-02	ci left: 3.886472e-03	ci right 4.294831e-03	k: 1553	n:380000
KS ci ratio: 7.711964e-03	ci left: 4.031704e-01	ci right 4.062942e-01	k: 153798	n:380000
CRNKL1   380000 perm   169 sec   (2253 perm/sec)   p_kst 4.047316e-01   p_cons 4.086842e-03   p_joint 7.327895e-02

Outputting figure to mutsig2_images.part000000000043/CRNKL1.7_2607_380000_0.40473_0.0040868_0.073279.png
                gene_name: CRNKL1
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0041 
      ci_cons_bounds_left: 0.0039 
     ci_cons_bounds_right: 0.0043 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.074 

Current progress: 24 percent done.
CROCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
Cons ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
CROCC   10000 perm   6 sec   (1796 perm/sec)   p_kst 1.919000e-01   p_cons 6.874000e-01   p_joint 3.606000e-01

Outputting figure to mutsig2_images.part000000000043/CROCC.6_6202_10000_0.1919_0.6874_0.3606.png
                gene_name: CROCC
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 26 percent done.
CSF1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
Cons ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
KS ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
CSF1R   10000 perm   4 sec   (2370 perm/sec)   p_kst 5.034000e-01   p_cons 5.470000e-01   p_joint 6.844000e-01

Outputting figure to mutsig2_images.part000000000043/CSF1R.6_3003_10000_0.5034_0.547_0.6844.png
                gene_name: CSF1R
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 28 percent done.
CRMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
Cons ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
KS ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
CRMP1   10000 perm   3 sec   (3029 perm/sec)   p_kst 4.451000e-01   p_cons 2.215000e-01   p_joint 4.206000e-01

Outputting figure to mutsig2_images.part000000000043/CRMP1.5_2160_10000_0.4451_0.2215_0.4206.png
                gene_name: CRMP1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 30 percent done.
CRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384786e-02	ci left: 8.827819e-01	ci right 8.951905e-01	k: 8891	n:10000
Cons ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
KS ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
CRX   10000 perm   2 sec   (6138 perm/sec)   p_kst 8.132000e-01   p_cons 6.424000e-01   p_joint 8.891000e-01

Outputting figure to mutsig2_images.part000000000043/CRX.5_912_10000_0.8132_0.6424_0.8891.png
                gene_name: CRX
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 33 percent done.
CRYGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.428697e-02	ci left: 7.137110e-01	ci right 7.313592e-01	k: 7226	n:10000
KS ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
CRYGC   10000 perm   2 sec   (5021 perm/sec)   p_kst 7.937000e-01   p_cons 7.226000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRYGC.5_537_10000_0.7937_0.7226_1.png
                gene_name: CRYGC
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
CREB3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
Cons ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
KS ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
CREB3L2   10000 perm   3 sec   (3208 perm/sec)   p_kst 2.605000e-01   p_cons 2.252000e-01   p_joint 2.965000e-01

Outputting figure to mutsig2_images.part000000000043/CREB3L2.4_1611_10000_0.2605_0.2252_0.2965.png
                gene_name: CREB3L2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 37 percent done.
CREBBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
CREBBP   10000 perm   7 sec   (1343 perm/sec)   p_kst 9.183000e-01   p_cons 7.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREBBP.4_7453_10000_0.9183_0.7005_1.png
                gene_name: CREBBP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CREG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
Cons ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
CREG2   10000 perm   6 sec   (1597 perm/sec)   p_kst 1.744000e-01   p_cons 8.395000e-01   p_joint 4.335000e-01

Outputting figure to mutsig2_images.part000000000043/CREG2.4_889_10000_0.1744_0.8395_0.4335.png
                gene_name: CREG2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 41 percent done.
CRISP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.971706e-02	ci left: 6.254759e-01	ci right 6.444454e-01	k: 6350	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
CRISP3   10000 perm   3 sec   (3437 perm/sec)   p_kst 7.844000e-01   p_cons 3.123000e-01   p_joint 6.350000e-01

Outputting figure to mutsig2_images.part000000000043/CRISP3.4_766_10000_0.7844_0.3123_0.635.png
                gene_name: CRISP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 43 percent done.
CRISPLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
Cons ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
KS ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
CRISPLD2   10000 perm   6 sec   (1784 perm/sec)   p_kst 9.450000e-02   p_cons 8.900000e-01   p_joint 1.905000e-01

Joint ci ratio: 5.405468e-02	ci left: 2.025412e-01	ci right 2.138438e-01	k: 4163	n:20000
Cons ci ratio: 9.588551e-03	ci left: 8.887863e-01	ci right 8.973990e-01	k: 17863	n:20000
KS ci ratio: 8.731397e-02	ci left: 8.753876e-02	ci right 9.558044e-02	k: 1830	n:20000
CRISPLD2   20000 perm   19 sec   (1066 perm/sec)   p_kst 9.150000e-02   p_cons 8.931500e-01   p_joint 2.081500e-01

Outputting figure to mutsig2_images.part000000000043/CRISPLD2.4_1550_20000_0.0915_0.89315_0.20815.png
                gene_name: CRISPLD2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 46 percent done.
CRTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
KS ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
CRTC2   10000 perm   2 sec   (5421 perm/sec)   p_kst 8.938000e-01   p_cons 6.298000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRTC2.4_2138_10000_0.8938_0.6298_1.png
                gene_name: CRTC2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
CRYBA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
Cons ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
KS ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
CRYBA4   10000 perm   3 sec   (3577 perm/sec)   p_kst 5.822000e-01   p_cons 8.792000e-01   p_joint 7.336000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBA4.4_611_10000_0.5822_0.8792_0.7336.png
                gene_name: CRYBA4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 50 percent done.
CRAMP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
CRAMP1L   10000 perm   3 sec   (3188 perm/sec)   p_kst 6.500000e-03   p_cons 5.048000e-01   p_joint 1.010000e-02

Joint ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
Cons ci ratio: 2.748468e-02	ci left: 4.972455e-01	ci right 5.111532e-01	k: 10084	n:20000
KS ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
CRAMP1L   20000 perm   6 sec   (3248 perm/sec)   p_kst 8.250000e-03   p_cons 5.042000e-01   p_joint 4.790000e-02

Joint ci ratio: 1.569605e-01	ci left: 1.876615e-02	ci right 2.199434e-02	k: 610	n:30000
Cons ci ratio: 2.195028e-02	ci left: 5.095935e-01	ci right 5.209369e-01	k: 15458	n:30000
KS ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
CRAMP1L   30000 perm   9 sec   (3377 perm/sec)   p_kst 8.433333e-03   p_cons 5.152667e-01   p_joint 2.033333e-02

Joint ci ratio: 1.473949e-01	ci left: 1.609305e-02	ci right 1.867770e-02	k: 694	n:40000
Cons ci ratio: 1.891166e-02	ci left: 5.129396e-01	ci right 5.227578e-01	k: 20714	n:40000
KS ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
CRAMP1L   40000 perm   12 sec   (3284 perm/sec)   p_kst 8.025000e-03   p_cons 5.178500e-01   p_joint 1.735000e-02

Joint ci ratio: 1.505372e-01	ci left: 1.237199e-02	ci right 1.440509e-02	k: 668	n:50000
Cons ci ratio: 1.694540e-02	ci left: 5.125690e-01	ci right 5.213490e-01	k: 25848	n:50000
KS ci ratio: 1.925611e-01	ci left: 7.428193e-03	ci right 9.029691e-03	k: 410	n:50000
CRAMP1L   50000 perm   16 sec   (3152 perm/sec)   p_kst 8.200000e-03   p_cons 5.169600e-01   p_joint 1.336000e-02

Joint ci ratio: 1.018721e-01	ci left: 2.285511e-02	ci right 2.532455e-02	k: 1444	n:60000
Cons ci ratio: 1.543376e-02	ci left: 5.140927e-01	ci right 5.221055e-01	k: 31086	n:60000
KS ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
CRAMP1L   60000 perm   24 sec   (2468 perm/sec)   p_kst 8.150000e-03   p_cons 5.181000e-01   p_joint 2.406667e-02

Joint ci ratio: 1.168284e-01	ci left: 1.490306e-02	ci right 1.676596e-02	k: 1107	n:70000
Cons ci ratio: 1.430570e-02	ci left: 5.138048e-01	ci right 5.212223e-01	k: 36226	n:70000
KS ci ratio: 1.639553e-01	ci left: 7.435595e-03	ci right 8.777089e-03	k: 566	n:70000
CRAMP1L   70000 perm   27 sec   (2611 perm/sec)   p_kst 8.085714e-03   p_cons 5.175143e-01   p_joint 1.581429e-02

Joint ci ratio: 9.998860e-02	ci left: 1.790665e-02	ci right 1.980347e-02	k: 1507	n:80000
Cons ci ratio: 1.338084e-02	ci left: 5.140805e-01	ci right 5.210182e-01	k: 41404	n:80000
KS ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
CRAMP1L   80000 perm   29 sec   (2718 perm/sec)   p_kst 7.887500e-03   p_cons 5.175500e-01   p_joint 1.883750e-02

Joint ci ratio: 6.769195e-02	ci left: 3.470491e-02	ci right 3.714734e-02	k: 3232	n:90000
Cons ci ratio: 1.259555e-02	ci left: 5.150739e-01	ci right 5.216138e-01	k: 46651	n:90000
KS ci ratio: 1.465327e-01	ci left: 7.310549e-03	ci right 8.477060e-03	k: 709	n:90000
CRAMP1L   90000 perm   32 sec   (2805 perm/sec)   p_kst 7.877778e-03   p_cons 5.183444e-01   p_joint 3.591111e-02

Joint ci ratio: 6.864515e-02	ci left: 3.049488e-02	ci right 3.267240e-02	k: 3157	n:100000
Cons ci ratio: 1.196080e-02	ci left: 5.147575e-01	ci right 5.209614e-01	k: 51786	n:100000
KS ci ratio: 1.400811e-01	ci left: 7.225455e-03	ci right 8.323384e-03	k: 776	n:100000
CRAMP1L   100000 perm   35 sec   (2870 perm/sec)   p_kst 7.760000e-03   p_cons 5.178600e-01   p_joint 3.157000e-02

Joint ci ratio: 6.497697e-02	ci left: 3.098563e-02	ci right 3.307550e-02	k: 3522	n:110000
Cons ci ratio: 1.139518e-02	ci left: 5.152968e-01	ci right 5.212114e-01	k: 57008	n:110000
KS ci ratio: 1.333031e-01	ci left: 7.279800e-03	ci right 8.328219e-03	k: 857	n:110000
CRAMP1L   110000 perm   38 sec   (2919 perm/sec)   p_kst 7.790909e-03   p_cons 5.182545e-01   p_joint 3.201818e-02

Joint ci ratio: 6.448425e-02	ci left: 2.891078e-02	ci right 3.084536e-02	k: 3584	n:120000
Cons ci ratio: 1.091982e-02	ci left: 5.149766e-01	ci right 5.206392e-01	k: 62137	n:120000
KS ci ratio: 1.273540e-01	ci left: 7.334223e-03	ci right 8.339780e-03	k: 939	n:120000
CRAMP1L   120000 perm   41 sec   (2954 perm/sec)   p_kst 7.825000e-03   p_cons 5.178083e-01   p_joint 2.986667e-02

Joint ci ratio: 7.059382e-02	ci left: 2.235068e-02	ci right 2.399376e-02	k: 3011	n:130000
Cons ci ratio: 1.073620e-02	ci left: 5.035629e-01	ci right 5.090061e-01	k: 65817	n:130000
KS ci ratio: 1.227431e-01	ci left: 7.306569e-03	ci right 8.269428e-03	k: 1011	n:130000
CRAMP1L   130000 perm   44 sec   (2986 perm/sec)   p_kst 7.776923e-03   p_cons 5.062846e-01   p_joint 2.316154e-02

Joint ci ratio: 6.848874e-02	ci left: 2.208062e-02	ci right 2.365351e-02	k: 3200	n:140000
Cons ci ratio: 1.035969e-02	ci left: 5.029845e-01	ci right 5.082295e-01	k: 70785	n:140000
KS ci ratio: 1.179431e-01	ci left: 7.366626e-03	ci right 8.296789e-03	k: 1095	n:140000
CRAMP1L   140000 perm   47 sec   (3007 perm/sec)   p_kst 7.821429e-03   p_cons 5.056071e-01   p_joint 2.285714e-02

Joint ci ratio: 6.636117e-02	ci left: 2.197838e-02	ci right 2.349348e-02	k: 3409	n:150000
Cons ci ratio: 1.002593e-02	ci left: 5.021997e-01	ci right 5.072667e-01	k: 75710	n:150000
KS ci ratio: 1.143018e-01	ci left: 7.335097e-03	ci right 8.230754e-03	k: 1166	n:150000
CRAMP1L   150000 perm   50 sec   (3022 perm/sec)   p_kst 7.773333e-03   p_cons 5.047333e-01   p_joint 2.272667e-02

Joint ci ratio: 6.742662e-02	ci left: 1.998949e-02	ci right 2.139045e-02	k: 3309	n:160000
Cons ci ratio: 9.698636e-03	ci left: 5.027407e-01	ci right 5.076466e-01	k: 80831	n:160000
KS ci ratio: 1.114784e-01	ci left: 7.241045e-03	ci right 8.101940e-03	k: 1226	n:160000
CRAMP1L   160000 perm   53 sec   (3033 perm/sec)   p_kst 7.662500e-03   p_cons 5.051937e-01   p_joint 2.068125e-02

Joint ci ratio: 6.650171e-02	ci left: 1.936289e-02	ci right 2.070060e-02	k: 3404	n:170000
Cons ci ratio: 9.398767e-03	ci left: 5.033615e-01	ci right 5.081207e-01	k: 85976	n:170000
KS ci ratio: 1.086842e-01	ci left: 7.181194e-03	ci right 8.012202e-03	k: 1290	n:170000
CRAMP1L   170000 perm   56 sec   (3036 perm/sec)   p_kst 7.588235e-03   p_cons 5.057412e-01   p_joint 2.002353e-02

Joint ci ratio: 7.177715e-02	ci left: 1.571459e-02	ci right 1.688995e-02	k: 2933	n:180000
Cons ci ratio: 9.129947e-03	ci left: 5.036486e-01	ci right 5.082735e-01	k: 91073	n:180000
KS ci ratio: 1.057367e-01	ci left: 7.176918e-03	ci right 7.983507e-03	k: 1363	n:180000
CRAMP1L   180000 perm   59 sec   (3035 perm/sec)   p_kst 7.572222e-03   p_cons 5.059611e-01   p_joint 1.629444e-02

Joint ci ratio: 6.137162e-02	ci left: 2.037551e-02	ci right 2.167074e-02	k: 3993	n:190000
Cons ci ratio: 8.882103e-03	ci left: 5.039545e-01	ci right 5.084558e-01	k: 96179	n:190000
KS ci ratio: 1.032705e-01	ci left: 7.137467e-03	ci right 7.919776e-03	k: 1429	n:190000
CRAMP1L   190000 perm   63 sec   (3033 perm/sec)   p_kst 7.521053e-03   p_cons 5.062053e-01   p_joint 2.101579e-02

Joint ci ratio: 5.616745e-02	ci left: 2.310680e-02	ci right 2.444705e-02	k: 4754	n:200000
Cons ci ratio: 8.662581e-03	ci left: 5.037013e-01	ci right 5.080886e-01	k: 101179	n:200000
KS ci ratio: 1.009352e-01	ci left: 7.107033e-03	ci right 7.867346e-03	k: 1496	n:200000
CRAMP1L   200000 perm   66 sec   (3027 perm/sec)   p_kst 7.480000e-03   p_cons 5.058950e-01   p_joint 2.377000e-02

Joint ci ratio: 5.680182e-02	ci left: 2.154590e-02	ci right 2.281019e-02	k: 4656	n:210000
Cons ci ratio: 8.452524e-03	ci left: 5.038306e-01	ci right 5.081121e-01	k: 106254	n:210000
KS ci ratio: 9.827772e-02	ci left: 7.149360e-03	ci right 7.892902e-03	k: 1578	n:210000
CRAMP1L   210000 perm   70 sec   (3019 perm/sec)   p_kst 7.514286e-03   p_cons 5.059714e-01   p_joint 2.217143e-02

Outputting figure to mutsig2_images.part000000000043/CRAMP1L.3_3890_210000_0.0075143_0.50597_0.022171.png
                gene_name: CRAMP1L
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.0075 
        ci_ks_bounds_left: 0.0071 
       ci_ks_bounds_right: 0.0079 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 52 percent done.
CRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.391215e-02	ci left: 4.336308e-01	ci right 4.532021e-01	k: 4434	n:10000
Cons ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
KS ci ratio: 5.877849e-03	ci left: 9.750383e-01	ci right 9.808786e-01	k: 9781	n:10000
CRB2   10000 perm   2 sec   (5750 perm/sec)   p_kst 9.781000e-01   p_cons 1.731000e-01   p_joint 4.434000e-01

Outputting figure to mutsig2_images.part000000000043/CRB2.3_3910_10000_0.9781_0.1731_0.4434.png
                gene_name: CRB2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 54 percent done.
CRHBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
KS ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
CRHBP   10000 perm   1 sec   (7426 perm/sec)   p_kst 6.067000e-01   p_cons 5.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRHBP.3_997_10000_0.6067_0.5533_1.png
                gene_name: CRHBP
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CRISP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
Cons ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
KS ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
CRISP2   10000 perm   1 sec   (7531 perm/sec)   p_kst 2.567000e-01   p_cons 2.636000e-01   p_joint 3.308000e-01

Outputting figure to mutsig2_images.part000000000043/CRISP2.3_760_10000_0.2567_0.2636_0.3308.png
                gene_name: CRISP2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 59 percent done.
CRLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
KS ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
CRLF1   10000 perm   1 sec   (7248 perm/sec)   p_kst 7.890000e-02   p_cons 2.786000e-01   p_joint 1.241000e-01

Joint ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
Cons ci ratio: 4.446492e-02	ci left: 2.735860e-01	ci right 2.860780e-01	k: 5596	n:20000
KS ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
CRLF1   20000 perm   3 sec   (6371 perm/sec)   p_kst 7.400000e-02   p_cons 2.798000e-01   p_joint 9.355000e-02

Outputting figure to mutsig2_images.part000000000043/CRLF1.3_1305_20000_0.074_0.2798_0.09355.png
                gene_name: CRLF1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 61 percent done.
CRTAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
KS ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
CRTAM   10000 perm   1 sec   (6677 perm/sec)   p_kst 7.292000e-01   p_cons 6.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRTAM.3_1222_10000_0.7292_0.6869_1.png
                gene_name: CRTAM
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
CRTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
CRTC3   10000 perm   2 sec   (6568 perm/sec)   p_kst 3.580000e-01   p_cons 2.400000e-03   p_joint 8.200000e-03

Joint ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 3.668711e-02	ci left: 3.566796e-01	ci right 3.700602e-01	k: 7267	n:20000
CRTC3   20000 perm   3 sec   (6023 perm/sec)   p_kst 3.633500e-01   p_cons 2.850000e-03   p_joint 1.115000e-02

Joint ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
Cons ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
KS ci ratio: 3.005655e-02	ci left: 3.563594e-01	ci right 3.672674e-01	k: 10854	n:30000
CRTC3   30000 perm   5 sec   (5788 perm/sec)   p_kst 3.618000e-01   p_cons 2.633333e-03   p_joint 5.233333e-03

Joint ci ratio: 2.973832e-01	ci left: 3.682473e-03	ci right 4.991094e-03	k: 172	n:40000
Cons ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
KS ci ratio: 2.607252e-02	ci left: 3.563408e-01	ci right 3.657794e-01	k: 14442	n:40000
CRTC3   40000 perm   7 sec   (5625 perm/sec)   p_kst 3.610500e-01   p_cons 2.550000e-03   p_joint 4.300000e-03

Joint ci ratio: 3.996951e-01	ci left: 1.537477e-03	ci right 2.322160e-03	k: 95	n:50000
Cons ci ratio: 4.175014e-01	ci left: 1.393896e-03	ci right 2.145847e-03	k: 87	n:50000
KS ci ratio: 2.355094e-02	ci left: 3.523201e-01	ci right 3.607365e-01	k: 17826	n:50000
CRTC3   50000 perm   9 sec   (5473 perm/sec)   p_kst 3.565200e-01   p_cons 1.740000e-03   p_joint 1.900000e-03

Joint ci ratio: 1.874827e-01	ci left: 6.554975e-03	ci right 7.926670e-03	k: 433	n:60000
Cons ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
KS ci ratio: 2.155483e-02	ci left: 3.515024e-01	ci right 3.591782e-01	k: 21320	n:60000
CRTC3   60000 perm   11 sec   (5334 perm/sec)   p_kst 3.553333e-01   p_cons 1.716667e-03   p_joint 7.216667e-03

Joint ci ratio: 3.998060e-01	ci left: 1.098144e-03	ci right 1.658786e-03	k: 95	n:70000
Cons ci ratio: 3.502998e-01	ci left: 1.473592e-03	ci right 2.111702e-03	k: 124	n:70000
KS ci ratio: 1.998736e-02	ci left: 3.510693e-01	ci right 3.581713e-01	k: 24823	n:70000
CRTC3   70000 perm   13 sec   (5215 perm/sec)   p_kst 3.546143e-01   p_cons 1.771429e-03   p_joint 1.357143e-03

Joint ci ratio: 3.769451e-01	ci left: 1.096239e-03	ci right 1.616007e-03	k: 107	n:80000
Cons ci ratio: 3.286650e-01	ci left: 1.483796e-03	ci right 2.078270e-03	k: 141	n:80000
KS ci ratio: 1.863600e-02	ci left: 3.527808e-01	ci right 3.594296e-01	k: 28488	n:80000
CRTC3   80000 perm   16 sec   (5104 perm/sec)   p_kst 3.561000e-01   p_cons 1.762500e-03   p_joint 1.337500e-03

Joint ci ratio: 3.917800e-01	ci left: 8.941129e-04	ci right 1.339050e-03	k: 99	n:90000
Cons ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
KS ci ratio: 1.753836e-02	ci left: 3.538024e-01	ci right 3.600735e-01	k: 32124	n:90000
CRTC3   90000 perm   18 sec   (5008 perm/sec)   p_kst 3.569333e-01   p_cons 1.744444e-03   p_joint 1.100000e-03

Joint ci ratio: 1.860419e-01	ci left: 4.008746e-03	ci right 4.840402e-03	k: 441	n:100000
Cons ci ratio: 2.848670e-01	ci left: 1.621058e-03	ci right 2.168480e-03	k: 188	n:100000
KS ci ratio: 1.665193e-02	ci left: 3.535905e-01	ci right 3.595378e-01	k: 35656	n:100000
CRTC3   100000 perm   20 sec   (4913 perm/sec)   p_kst 3.565600e-01   p_cons 1.880000e-03   p_joint 4.410000e-03

Joint ci ratio: 1.324500e-01	ci left: 7.376499e-03	ci right 8.431512e-03	k: 868	n:110000
Cons ci ratio: 2.715448e-01	ci left: 1.634375e-03	ci right 2.156085e-03	k: 207	n:110000
KS ci ratio: 1.588130e-02	ci left: 3.536053e-01	ci right 3.592750e-01	k: 39208	n:110000
CRTC3   110000 perm   23 sec   (4824 perm/sec)   p_kst 3.564364e-01   p_cons 1.881818e-03   p_joint 7.890909e-03

Joint ci ratio: 1.324173e-01	ci left: 6.769707e-03	ci right 7.737669e-03	k: 869	n:120000
Cons ci ratio: 2.571106e-01	ci left: 1.684940e-03	ci right 2.189617e-03	k: 231	n:120000
KS ci ratio: 1.519041e-02	ci left: 3.541721e-01	ci right 3.596015e-01	k: 42826	n:120000
CRTC3   120000 perm   25 sec   (4718 perm/sec)   p_kst 3.568833e-01   p_cons 1.925000e-03   p_joint 7.241667e-03

Joint ci ratio: 1.354655e-01	ci left: 5.966277e-03	ci right 6.840575e-03	k: 831	n:130000
Cons ci ratio: 2.471883e-01	ci left: 1.692251e-03	ci right 2.176552e-03	k: 250	n:130000
KS ci ratio: 1.460767e-02	ci left: 3.538650e-01	ci right 3.590798e-01	k: 46341	n:130000
CRTC3   130000 perm   28 sec   (4603 perm/sec)   p_kst 3.564692e-01   p_cons 1.923077e-03   p_joint 6.392308e-03

Joint ci ratio: 1.184342e-01	ci left: 7.304227e-03	ci right 8.230620e-03	k: 1086	n:140000
Cons ci ratio: 2.361518e-01	ci left: 1.732432e-03	ci right 2.202864e-03	k: 274	n:140000
KS ci ratio: 1.409885e-02	ci left: 3.532274e-01	ci right 3.582500e-01	k: 49803	n:140000
CRTC3   140000 perm   31 sec   (4492 perm/sec)   p_kst 3.557357e-01   p_cons 1.957143e-03   p_joint 7.757143e-03

Joint ci ratio: 1.053834e-01	ci left: 8.658086e-03	ci right 9.627697e-03	k: 1370	n:150000
Cons ci ratio: 2.272354e-01	ci left: 1.755095e-03	ci right 2.211166e-03	k: 296	n:150000
KS ci ratio: 1.362781e-02	ci left: 3.530771e-01	ci right 3.579284e-01	k: 53325	n:150000
CRTC3   150000 perm   34 sec   (4429 perm/sec)   p_kst 3.555000e-01   p_cons 1.973333e-03   p_joint 9.133333e-03

Joint ci ratio: 1.027269e-01	ci left: 8.555221e-03	ci right 9.487701e-03	k: 1442	n:160000
Cons ci ratio: 2.189147e-01	ci left: 1.781125e-03	ci right 2.224732e-03	k: 319	n:160000
KS ci ratio: 1.320985e-02	ci left: 3.526424e-01	ci right 3.573379e-01	k: 56798	n:160000
CRTC3   160000 perm   37 sec   (4370 perm/sec)   p_kst 3.549875e-01   p_cons 1.993750e-03   p_joint 9.012500e-03

Joint ci ratio: 9.831581e-02	ci left: 8.808983e-03	ci right 9.725517e-03	k: 1574	n:170000
Cons ci ratio: 2.114458e-01	ci left: 1.804359e-03	ci right 2.236435e-03	k: 342	n:170000
KS ci ratio: 1.284775e-02	ci left: 3.515619e-01	ci right 3.561137e-01	k: 60152	n:170000
CRTC3   170000 perm   39 sec   (4312 perm/sec)   p_kst 3.538353e-01   p_cons 2.011765e-03   p_joint 9.258824e-03

Joint ci ratio: 9.611895e-02	ci left: 8.715270e-03	ci right 9.600647e-03	k: 1647	n:180000
Cons ci ratio: 2.052554e-01	ci left: 1.814699e-03	ci right 2.234932e-03	k: 363	n:180000
KS ci ratio: 1.249297e-02	ci left: 3.513632e-01	ci right 3.557859e-01	k: 63643	n:180000
CRTC3   180000 perm   42 sec   (4255 perm/sec)   p_kst 3.535722e-01   p_cons 2.016667e-03   p_joint 9.150000e-03

Joint ci ratio: 9.535747e-02	ci left: 8.395207e-03	ci right 9.240934e-03	k: 1674	n:190000
Cons ci ratio: 2.008900e-01	ci left: 1.799116e-03	ci right 2.205793e-03	k: 379	n:190000
KS ci ratio: 1.216197e-02	ci left: 3.513395e-01	ci right 3.556439e-01	k: 67163	n:190000
CRTC3   190000 perm   45 sec   (4198 perm/sec)   p_kst 3.534895e-01   p_cons 1.994737e-03   p_joint 8.810526e-03

Joint ci ratio: 9.506440e-02	ci left: 8.029065e-03	ci right 8.835280e-03	k: 1685	n:200000
Cons ci ratio: 1.945886e-01	ci left: 1.827975e-03	ci right 2.226679e-03	k: 404	n:200000
KS ci ratio: 1.185959e-02	ci left: 3.511798e-01	ci right 3.553744e-01	k: 70655	n:200000
CRTC3   200000 perm   48 sec   (4138 perm/sec)   p_kst 3.532750e-01   p_cons 2.020000e-03   p_joint 8.425000e-03

Joint ci ratio: 1.015011e-01	ci left: 6.694269e-03	ci right 7.414677e-03	k: 1480	n:210000
Cons ci ratio: 1.904044e-01	ci left: 1.822512e-03	ci right 2.210488e-03	k: 422	n:210000
KS ci ratio: 1.156893e-02	ci left: 3.514217e-01	ci right 3.555157e-01	k: 74228	n:210000
CRTC3   210000 perm   52 sec   (4047 perm/sec)   p_kst 3.534667e-01   p_cons 2.009524e-03   p_joint 7.047619e-03

Joint ci ratio: 1.032513e-01	ci left: 6.172874e-03	ci right 6.849318e-03	k: 1431	n:220000
Cons ci ratio: 1.875474e-01	ci left: 1.795963e-03	ci right 2.171897e-03	k: 435	n:220000
KS ci ratio: 1.129954e-02	ci left: 3.516064e-01	ci right 3.556065e-01	k: 77793	n:220000
CRTC3   220000 perm   56 sec   (3963 perm/sec)   p_kst 3.536045e-01   p_cons 1.977273e-03   p_joint 6.504545e-03

Joint ci ratio: 1.011550e-01	ci left: 6.158687e-03	ci right 6.819060e-03	k: 1491	n:230000
Cons ci ratio: 1.839958e-01	ci left: 1.788353e-03	ci right 2.154815e-03	k: 452	n:230000
KS ci ratio: 1.105412e-02	ci left: 3.515286e-01	ci right 3.554403e-01	k: 81301	n:230000
CRTC3   230000 perm   59 sec   (3884 perm/sec)   p_kst 3.534826e-01   p_cons 1.965217e-03   p_joint 6.482609e-03

Joint ci ratio: 1.002600e-01	ci left: 6.011718e-03	ci right 6.650292e-03	k: 1518	n:240000
Cons ci ratio: 1.778177e-01	ci left: 1.841140e-03	ci right 2.204388e-03	k: 484	n:240000
KS ci ratio: 1.082926e-02	ci left: 3.512375e-01	ci right 3.550660e-01	k: 84756	n:240000
CRTC3   240000 perm   63 sec   (3809 perm/sec)   p_kst 3.531500e-01   p_cons 2.016667e-03   p_joint 6.325000e-03

Joint ci ratio: 9.774721e-02	ci left: 6.079436e-03	ci right 6.708090e-03	k: 1597	n:250000
Cons ci ratio: 1.727256e-01	ci left: 1.878409e-03	ci right 2.237292e-03	k: 513	n:250000
KS ci ratio: 1.061247e-02	ci left: 3.511903e-01	ci right 3.549411e-01	k: 88266	n:250000
CRTC3   250000 perm   67 sec   (3732 perm/sec)   p_kst 3.530640e-01   p_cons 2.052000e-03   p_joint 6.388000e-03

Joint ci ratio: 9.442757e-02	ci left: 6.273567e-03	ci right 6.899047e-03	k: 1711	n:260000
Cons ci ratio: 1.689854e-01	ci left: 1.890843e-03	ci right 2.243482e-03	k: 536	n:260000
KS ci ratio: 1.040425e-02	ci left: 3.513203e-01	ci right 3.549984e-01	k: 91821	n:260000
CRTC3   260000 perm   71 sec   (3665 perm/sec)   p_kst 3.531577e-01   p_cons 2.061538e-03   p_joint 6.580769e-03

Joint ci ratio: 9.180464e-02	ci left: 6.399360e-03	ci right 7.018707e-03	k: 1810	n:270000
Cons ci ratio: 1.662233e-01	ci left: 1.884681e-03	ci right 2.229851e-03	k: 554	n:270000
KS ci ratio: 1.021445e-02	ci left: 3.511453e-01	ci right 3.547541e-01	k: 95296	n:270000
CRTC3   270000 perm   75 sec   (3601 perm/sec)   p_kst 3.529481e-01   p_cons 2.051852e-03   p_joint 6.703704e-03

Joint ci ratio: 8.307446e-02	ci left: 7.561410e-03	ci right 8.220266e-03	k: 2208	n:280000
Cons ci ratio: 1.378770e-01	ci left: 2.680057e-03	ci right 3.080343e-03	k: 805	n:280000
KS ci ratio: 1.003160e-02	ci left: 3.511226e-01	ci right 3.546662e-01	k: 98810	n:280000
CRTC3   280000 perm   79 sec   (3540 perm/sec)   p_kst 3.528929e-01   p_cons 2.875000e-03   p_joint 7.885714e-03

Joint ci ratio: 8.162765e-02	ci left: 7.567476e-03	ci right 8.214830e-03	k: 2287	n:290000
Cons ci ratio: 1.354615e-01	ci left: 2.684222e-03	ci right 3.077541e-03	k: 834	n:290000
KS ci ratio: 9.861965e-03	ci left: 3.509297e-01	ci right 3.544111e-01	k: 102274	n:290000
CRTC3   290000 perm   83 sec   (3479 perm/sec)   p_kst 3.526690e-01   p_cons 2.875862e-03   p_joint 7.886207e-03

Joint ci ratio: 8.303970e-02	ci left: 7.067034e-03	ci right 7.682540e-03	k: 2211	n:300000
Cons ci ratio: 1.327839e-01	ci left: 2.704281e-03	ci right 3.092087e-03	k: 868	n:300000
KS ci ratio: 9.698735e-03	ci left: 3.508401e-01	ci right 3.542627e-01	k: 105765	n:300000
CRTC3   300000 perm   88 sec   (3424 perm/sec)   p_kst 3.525500e-01   p_cons 2.893333e-03   p_joint 7.370000e-03

Joint ci ratio: 8.195589e-02	ci left: 7.025455e-03	ci right 7.628972e-03	k: 2270	n:310000
Cons ci ratio: 1.309885e-01	ci left: 2.691910e-03	ci right 3.072316e-03	k: 892	n:310000
KS ci ratio: 9.547803e-03	ci left: 3.505441e-01	ci right 3.539103e-01	k: 109190	n:310000
CRTC3   310000 perm   92 sec   (3371 perm/sec)   p_kst 3.522258e-01   p_cons 2.877419e-03   p_joint 7.322581e-03

Joint ci ratio: 7.949926e-02	ci left: 7.240733e-03	ci right 7.843236e-03	k: 2412	n:320000
Cons ci ratio: 1.293347e-01	ci left: 2.677321e-03	ci right 3.050522e-03	k: 915	n:320000
KS ci ratio: 9.395394e-03	ci left: 3.506697e-01	ci right 3.539830e-01	k: 112744	n:320000
CRTC3   320000 perm   96 sec   (3320 perm/sec)   p_kst 3.523250e-01   p_cons 2.859375e-03   p_joint 7.537500e-03

Joint ci ratio: 7.837129e-02	ci left: 7.229250e-03	ci right 7.821872e-03	k: 2482	n:330000
Cons ci ratio: 1.275379e-01	ci left: 2.672446e-03	ci right 3.039401e-03	k: 941	n:330000
KS ci ratio: 9.254051e-03	ci left: 3.505913e-01	ci right 3.538537e-01	k: 116233	n:330000
CRTC3   330000 perm   101 sec   (3272 perm/sec)   p_kst 3.522212e-01   p_cons 2.851515e-03   p_joint 7.521212e-03

Joint ci ratio: 7.707736e-02	ci left: 7.258886e-03	ci right 7.843672e-03	k: 2566	n:340000
Cons ci ratio: 1.257488e-01	ci left: 2.670740e-03	ci right 3.031933e-03	k: 968	n:340000
KS ci ratio: 9.117254e-03	ci left: 3.506001e-01	ci right 3.538142e-01	k: 119750	n:340000
CRTC3   340000 perm   105 sec   (3225 perm/sec)   p_kst 3.522059e-01   p_cons 2.847059e-03   p_joint 7.547059e-03

Joint ci ratio: 6.948466e-02	ci left: 8.698189e-03	ci right 9.327123e-03	k: 3153	n:350000
Cons ci ratio: 1.242207e-01	ci left: 2.660860e-03	ci right 3.016022e-03	k: 992	n:350000
KS ci ratio: 8.987701e-03	ci left: 3.505403e-01	ci right 3.537079e-01	k: 123243	n:350000
CRTC3   350000 perm   110 sec   (3179 perm/sec)   p_kst 3.521229e-01   p_cons 2.834286e-03   p_joint 9.008571e-03

Joint ci ratio: 6.878197e-02	ci left: 8.633997e-03	ci right 9.251724e-03	k: 3218	n:360000
Cons ci ratio: 1.226865e-01	ci left: 2.654247e-03	ci right 3.003832e-03	k: 1017	n:360000
KS ci ratio: 8.857422e-03	ci left: 3.507977e-01	ci right 3.539214e-01	k: 126849	n:360000
CRTC3   360000 perm   115 sec   (3132 perm/sec)   p_kst 3.523583e-01   p_cons 2.825000e-03   p_joint 8.938889e-03

Joint ci ratio: 8.016104e-02	ci left: 6.164115e-03	ci right 6.681498e-03	k: 2375	n:370000
Cons ci ratio: 1.205718e-01	ci left: 2.676849e-03	ci right 3.022902e-03	k: 1053	n:370000
KS ci ratio: 8.739578e-03	ci left: 3.506796e-01	ci right 3.537605e-01	k: 130321	n:370000
CRTC3   370000 perm   120 sec   (3089 perm/sec)   p_kst 3.522189e-01   p_cons 2.845946e-03   p_joint 6.418919e-03

Joint ci ratio: 7.910279e-02	ci left: 6.166969e-03	ci right 6.677443e-03	k: 2439	n:380000
Cons ci ratio: 1.186174e-01	ci left: 2.695757e-03	ci right 3.038209e-03	k: 1088	n:380000
KS ci ratio: 8.627012e-03	ci left: 3.505313e-01	ci right 3.535710e-01	k: 133779	n:380000
CRTC3   380000 perm   125 sec   (3045 perm/sec)   p_kst 3.520500e-01   p_cons 2.863158e-03   p_joint 6.418421e-03

Joint ci ratio: 7.799138e-02	ci left: 6.184806e-03	ci right 6.689236e-03	k: 2509	n:390000
Cons ci ratio: 1.172267e-01	ci left: 2.691335e-03	ci right 3.028939e-03	k: 1114	n:390000
KS ci ratio: 8.515524e-03	ci left: 3.505598e-01	ci right 3.535603e-01	k: 137303	n:390000
CRTC3   390000 perm   130 sec   (3004 perm/sec)   p_kst 3.520590e-01   p_cons 2.856410e-03   p_joint 6.433333e-03

Joint ci ratio: 7.706094e-02	ci left: 6.179728e-03	ci right 6.677462e-03	k: 2570	n:400000
Cons ci ratio: 1.161392e-01	ci left: 2.675018e-03	ci right 3.007249e-03	k: 1135	n:400000
KS ci ratio: 8.407698e-03	ci left: 3.506172e-01	ci right 3.535800e-01	k: 140839	n:400000
CRTC3   400000 perm   135 sec   (2964 perm/sec)   p_kst 3.520975e-01   p_cons 2.837500e-03   p_joint 6.425000e-03

Joint ci ratio: 7.606128e-02	ci left: 6.191683e-03	ci right 6.683624e-03	k: 2638	n:410000
Cons ci ratio: 1.148329e-01	ci left: 2.671356e-03	ci right 2.999147e-03	k: 1161	n:410000
KS ci ratio: 8.305864e-03	ci left: 3.505623e-01	ci right 3.534886e-01	k: 144330	n:410000
CRTC3   410000 perm   140 sec   (2925 perm/sec)   p_kst 3.520244e-01   p_cons 2.831707e-03   p_joint 6.434146e-03

Joint ci ratio: 6.852659e-02	ci left: 7.465938e-03	ci right 7.998029e-03	k: 3246	n:420000
Cons ci ratio: 1.133784e-01	ci left: 2.677143e-03	ci right 3.001205e-03	k: 1191	n:420000
KS ci ratio: 8.203574e-03	ci left: 3.507362e-01	ci right 3.536277e-01	k: 147916	n:420000
CRTC3   420000 perm   146 sec   (2884 perm/sec)   p_kst 3.521810e-01   p_cons 2.835714e-03   p_joint 7.728571e-03

Joint ci ratio: 6.775909e-02	ci left: 7.461472e-03	ci right 7.987055e-03	k: 3320	n:430000
Cons ci ratio: 1.123936e-01	ci left: 2.662341e-03	ci right 2.981626e-03	k: 1212	n:430000
KS ci ratio: 8.104600e-03	ci left: 3.509232e-01	ci right 3.537811e-01	k: 151511	n:430000
CRTC3   430000 perm   151 sec   (2842 perm/sec)   p_kst 3.523512e-01   p_cons 2.818605e-03   p_joint 7.720930e-03

Joint ci ratio: 6.266995e-02	ci left: 8.537330e-03	ci right 9.091894e-03	k: 3877	n:440000
Cons ci ratio: 1.110288e-01	ci left: 2.668110e-03	ci right 2.983948e-03	k: 1242	n:440000
KS ci ratio: 8.013790e-03	ci left: 3.508362e-01	ci right 3.536612e-01	k: 154989	n:440000
CRTC3   440000 perm   157 sec   (2809 perm/sec)   p_kst 3.522477e-01   p_cons 2.822727e-03   p_joint 8.811364e-03

Joint ci ratio: 6.220062e-02	ci left: 8.476668e-03	ci right 9.023019e-03	k: 3936	n:450000
Cons ci ratio: 1.095831e-01	ci left: 2.680130e-03	ci right 2.992993e-03	k: 1275	n:450000
KS ci ratio: 7.924306e-03	ci left: 3.508487e-01	ci right 3.536421e-01	k: 158510	n:450000
CRTC3   450000 perm   162 sec   (2776 perm/sec)   p_kst 3.522444e-01   p_cons 2.833333e-03   p_joint 8.746667e-03

Joint ci ratio: 6.171051e-02	ci left: 8.427221e-03	ci right 8.965952e-03	k: 3999	n:460000
Cons ci ratio: 1.084837e-01	ci left: 2.676846e-03	ci right 2.985990e-03	k: 1301	n:460000
KS ci ratio: 7.833499e-03	ci left: 3.511084e-01	ci right 3.538717e-01	k: 162145	n:460000
CRTC3   460000 perm   168 sec   (2743 perm/sec)   p_kst 3.524891e-01   p_cons 2.828261e-03   p_joint 8.693478e-03

Joint ci ratio: 6.106523e-02	ci left: 8.425993e-03	ci right 8.958814e-03	k: 4084	n:470000
Cons ci ratio: 1.072146e-01	ci left: 2.684071e-03	ci right 2.990194e-03	k: 1332	n:470000
KS ci ratio: 7.750977e-03	ci left: 3.510490e-01	ci right 3.537826e-01	k: 165635	n:470000
CRTC3   470000 perm   173 sec   (2712 perm/sec)   p_kst 3.524149e-01   p_cons 2.834043e-03   p_joint 8.689362e-03

Joint ci ratio: 6.038138e-02	ci left: 8.441261e-03	ci right 8.968861e-03	k: 4177	n:480000
Cons ci ratio: 1.064991e-01	ci left: 2.664649e-03	ci right 2.966402e-03	k: 1350	n:480000
KS ci ratio: 7.667824e-03	ci left: 3.511816e-01	ci right 3.538868e-01	k: 169216	n:480000
CRTC3   480000 perm   179 sec   (2682 perm/sec)   p_kst 3.525333e-01   p_cons 2.812500e-03   p_joint 8.702083e-03

Joint ci ratio: 6.152579e-02	ci left: 7.963454e-03	ci right 8.470958e-03	k: 4025	n:490000
Cons ci ratio: 1.055275e-01	ci left: 2.659936e-03	ci right 2.958236e-03	k: 1375	n:490000
KS ci ratio: 7.588748e-03	ci left: 3.512213e-01	ci right 3.538988e-01	k: 172754	n:490000
CRTC3   490000 perm   185 sec   (2654 perm/sec)   p_kst 3.525592e-01   p_cons 2.806122e-03   p_joint 8.214286e-03

Joint ci ratio: 5.830974e-02	ci left: 8.696712e-03	ci right 9.221001e-03	k: 4478	n:500000
Cons ci ratio: 1.044700e-01	ci left: 2.661266e-03	ci right 2.956542e-03	k: 1403	n:500000
KS ci ratio: 7.510754e-03	ci left: 3.513395e-01	ci right 3.539902e-01	k: 176332	n:500000
CRTC3   500000 perm   190 sec   (2626 perm/sec)   p_kst 3.526640e-01   p_cons 2.806000e-03   p_joint 8.956000e-03

Joint ci ratio: 5.845993e-02	ci left: 8.483654e-03	ci right 8.996460e-03	k: 4456	n:510000
Cons ci ratio: 1.034074e-01	ci left: 2.664469e-03	ci right 2.956910e-03	k: 1432	n:510000
KS ci ratio: 7.437638e-03	ci left: 3.512984e-01	ci right 3.539229e-01	k: 179831	n:510000
CRTC3   510000 perm   198 sec   (2576 perm/sec)   p_kst 3.526098e-01   p_cons 2.807843e-03   p_joint 8.737255e-03

Joint ci ratio: 5.969289e-02	ci left: 7.979404e-03	ci right 8.472253e-03	k: 4276	n:520000
Cons ci ratio: 1.023064e-01	ci left: 2.671312e-03	ci right 2.961195e-03	k: 1463	n:520000
KS ci ratio: 7.364476e-03	ci left: 3.513916e-01	ci right 3.539908e-01	k: 183399	n:520000
CRTC3   520000 perm   208 sec   (2495 perm/sec)   p_kst 3.526904e-01   p_cons 2.813462e-03   p_joint 8.223077e-03

Joint ci ratio: 5.904007e-02	ci left: 8.005437e-03	ci right 8.494301e-03	k: 4371	n:530000
Cons ci ratio: 1.012399e-01	ci left: 2.677912e-03	ci right 2.965302e-03	k: 1494	n:530000
KS ci ratio: 7.297832e-03	ci left: 3.512061e-01	ci right 3.537804e-01	k: 186821	n:530000
CRTC3   530000 perm   219 sec   (2422 perm/sec)   p_kst 3.524925e-01   p_cons 2.818868e-03   p_joint 8.247170e-03

Joint ci ratio: 5.711381e-02	ci left: 8.401075e-03	ci right 8.896810e-03	k: 4669	n:540000
Cons ci ratio: 1.005702e-01	ci left: 2.664422e-03	ci right 2.948361e-03	k: 1514	n:540000
KS ci ratio: 7.232994e-03	ci left: 3.510258e-01	ci right 3.535758e-01	k: 190242	n:540000
CRTC3   540000 perm   231 sec   (2339 perm/sec)   p_kst 3.523000e-01   p_cons 2.803704e-03   p_joint 8.646296e-03

Joint ci ratio: 5.681240e-02	ci left: 8.337935e-03	ci right 8.827262e-03	k: 4719	n:550000
Cons ci ratio: 9.955652e-02	ci left: 2.670932e-03	ci right 2.952528e-03	k: 1545	n:550000
KS ci ratio: 7.165796e-03	ci left: 3.511101e-01	ci right 3.536369e-01	k: 193805	n:550000
CRTC3   550000 perm   244 sec   (2253 perm/sec)   p_kst 3.523727e-01   p_cons 2.809091e-03   p_joint 8.580000e-03

Outputting figure to mutsig2_images.part000000000043/CRTC3.3_1920_550000_0.35237_0.0028091_0.00858.png
                gene_name: CRTC3
               theta_stop: 0.100 
                    nperm: 550000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.0028 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0030 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0088 

Current progress: 65 percent done.
CRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
Cons ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
KS ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
CRY1   10000 perm   2 sec   (6234 perm/sec)   p_kst 1.604000e-01   p_cons 3.853000e-01   p_joint 1.826000e-01

Outputting figure to mutsig2_images.part000000000043/CRY1.3_1809_10000_0.1604_0.3853_0.1826.png
                gene_name: CRY1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 67 percent done.
CRYGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
KS ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
CRYGA   10000 perm   3 sec   (3575 perm/sec)   p_kst 9.485000e-01   p_cons 3.241000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRYGA.3_537_10000_0.9485_0.3241_1.png
                gene_name: CRYGA
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
CRYGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
Cons ci ratio: 2.566102e-02	ci left: 6.909110e-01	ci right 7.089724e-01	k: 7000	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
CRYGB   10000 perm   9 sec   (1113 perm/sec)   p_kst 4.370000e-02   p_cons 7.000000e-01   p_joint 8.490000e-02

Joint ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
Cons ci ratio: 1.806570e-02	ci left: 6.954562e-01	ci right 7.081850e-01	k: 14037	n:20000
KS ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
CRYGB   20000 perm   17 sec   (1182 perm/sec)   p_kst 4.030000e-02   p_cons 7.018500e-01   p_joint 6.120000e-02

Joint ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
Cons ci ratio: 1.524761e-02	ci left: 6.825217e-01	ci right 6.930419e-01	k: 20634	n:30000
KS ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
CRYGB   30000 perm   25 sec   (1209 perm/sec)   p_kst 4.053333e-02   p_cons 6.878000e-01   p_joint 5.506667e-02

Joint ci ratio: 7.409270e-02	ci left: 6.297173e-02	ci right 6.784159e-02	k: 2615	n:40000
Cons ci ratio: 1.318260e-02	ci left: 6.839607e-01	ci right 6.930619e-01	k: 27541	n:40000
KS ci ratio: 9.404630e-02	ci left: 3.966408e-02	ci right 4.360282e-02	k: 1664	n:40000
CRYGB   40000 perm   33 sec   (1209 perm/sec)   p_kst 4.160000e-02   p_cons 6.885250e-01   p_joint 6.537500e-02

Outputting figure to mutsig2_images.part000000000043/CRYGB.3_540_40000_0.0416_0.68853_0.065375.png
                gene_name: CRYGB
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 72 percent done.
CSAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
Cons ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
KS ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
CSAD   10000 perm   2 sec   (6192 perm/sec)   p_kst 1.920000e-02   p_cons 8.439000e-01   p_joint 7.190000e-02

Joint ci ratio: 1.205030e-01	ci left: 4.721434e-02	ci right 5.331725e-02	k: 1004	n:20000
Cons ci ratio: 1.192432e-02	ci left: 8.387443e-01	ci right 8.488556e-01	k: 16877	n:20000
KS ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
CSAD   20000 perm   9 sec   (2111 perm/sec)   p_kst 2.115000e-02   p_cons 8.438500e-01   p_joint 5.020000e-02

Joint ci ratio: 1.224470e-01	ci left: 3.100724e-02	ci right 3.508385e-02	k: 990	n:30000
Cons ci ratio: 9.525181e-03	ci left: 8.454371e-01	ci right 8.535618e-01	k: 25486	n:30000
KS ci ratio: 1.525583e-01	ci left: 1.988850e-02	ci right 2.320506e-02	k: 645	n:30000
CSAD   30000 perm   18 sec   (1652 perm/sec)   p_kst 2.150000e-02   p_cons 8.495333e-01   p_joint 3.300000e-02

Joint ci ratio: 8.634624e-02	ci left: 4.688035e-02	ci right 5.113543e-02	k: 1959	n:40000
Cons ci ratio: 8.258103e-03	ci left: 8.457057e-01	ci right 8.527435e-01	k: 33970	n:40000
KS ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
CSAD   40000 perm   27 sec   (1505 perm/sec)   p_kst 2.150000e-02   p_cons 8.492500e-01   p_joint 4.897500e-02

Joint ci ratio: 7.810614e-02	ci left: 4.608369e-02	ci right 4.984901e-02	k: 2397	n:50000
Cons ci ratio: 7.399778e-03	ci left: 8.456095e-01	ci right 8.519099e-01	k: 42439	n:50000
KS ci ratio: 1.179854e-01	ci left: 2.032418e-02	ci right 2.289178e-02	k: 1079	n:50000
CSAD   50000 perm   33 sec   (1502 perm/sec)   p_kst 2.158000e-02   p_cons 8.487800e-01   p_joint 4.794000e-02

Joint ci ratio: 6.131149e-02	ci left: 6.182440e-02	ci right 6.575125e-02	k: 3826	n:60000
Cons ci ratio: 6.768516e-03	ci left: 8.453709e-01	ci right 8.511287e-01	k: 50896	n:60000
KS ci ratio: 1.061668e-01	ci left: 2.103593e-02	ci right 2.341060e-02	k: 1332	n:60000
CSAD   60000 perm   36 sec   (1688 perm/sec)   p_kst 2.220000e-02   p_cons 8.482667e-01   p_joint 6.376667e-02

Joint ci ratio: 5.737558e-02	ci left: 6.071784e-02	ci right 6.431853e-02	k: 4375	n:70000
Cons ci ratio: 6.256903e-03	ci left: 8.459807e-01	ci right 8.513047e-01	k: 59406	n:70000
KS ci ratio: 9.852392e-02	ci left: 2.102366e-02	ci right 2.321620e-02	k: 1547	n:70000
CSAD   70000 perm   38 sec   (1846 perm/sec)   p_kst 2.210000e-02   p_cons 8.486571e-01   p_joint 6.250000e-02

Outputting figure to mutsig2_images.part000000000043/CSAD.3_1627_70000_0.0221_0.84866_0.0625.png
                gene_name: CSAD
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 74 percent done.
CSE1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
CSE1L   10000 perm   2 sec   (5840 perm/sec)   p_kst 7.460000e-01   p_cons 6.510000e-02   p_joint 7.202000e-01

Joint ci ratio: 4.433412e-03	ci left: 9.728452e-01	ci right 9.772152e-01	k: 19502	n:20000
Cons ci ratio: 1.058684e-01	ci left: 6.074404e-02	ci right 6.758334e-02	k: 1282	n:20000
KS ci ratio: 1.621868e-02	ci left: 7.388487e-01	ci right 7.509801e-01	k: 14899	n:20000
CSE1L   20000 perm   6 sec   (3401 perm/sec)   p_kst 7.449500e-01   p_cons 6.410000e-02   p_joint 9.751000e-01

Joint ci ratio: 2.325512e-02	ci left: 4.807290e-01	ci right 4.920736e-01	k: 14592	n:30000
Cons ci ratio: 8.518353e-02	ci left: 6.311792e-02	ci right 6.876649e-02	k: 1977	n:30000
KS ci ratio: 1.329424e-02	ci left: 7.384847e-01	ci right 7.484014e-01	k: 22304	n:30000
CSE1L   30000 perm   10 sec   (2892 perm/sec)   p_kst 7.434667e-01   p_cons 6.590000e-02   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000043/CSE1L.3_3012_30000_0.74347_0.0659_0.4864.png
                gene_name: CSE1L
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 76 percent done.
CREM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
KS ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
CREM   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.253000e-01   p_cons 4.922000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREM.2_1332_10000_0.7253_0.4922_1.png
                gene_name: CREM
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CRHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
Cons ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
CRHR2   10000 perm   1 sec   (6816 perm/sec)   p_kst 2.953000e-01   p_cons 1.161000e-01   p_joint 3.314000e-01

Joint ci ratio: 6.378337e-02	ci left: 1.537595e-01	ci right 1.639399e-01	k: 3176	n:20000
Cons ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
KS ci ratio: 4.243665e-02	ci left: 2.926596e-01	ci right 3.053988e-01	k: 5980	n:20000
CRHR2   20000 perm   5 sec   (4106 perm/sec)   p_kst 2.990000e-01   p_cons 1.225000e-01   p_joint 1.588000e-01

Outputting figure to mutsig2_images.part000000000043/CRHR2.2_1284_20000_0.299_0.1225_0.1588.png
                gene_name: CRHR2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 80 percent done.
CRIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
Cons ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
KS ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
CRIP3   10000 perm   1 sec   (6693 perm/sec)   p_kst 6.345000e-01   p_cons 7.872000e-01   p_joint 7.060000e-01

Outputting figure to mutsig2_images.part000000000043/CRIP3.2_647_10000_0.6345_0.7872_0.706.png
                gene_name: CRIP3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 83 percent done.
CRIPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
Cons ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
KS ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
CRIPT   10000 perm   1 sec   (7207 perm/sec)   p_kst 5.877000e-01   p_cons 1.955000e-01   p_joint 2.297000e-01

Outputting figure to mutsig2_images.part000000000043/CRIPT.2_326_10000_0.5877_0.1955_0.2297.png
                gene_name: CRIPT
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
CRKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
Cons ci ratio: 2.965940e-02	ci left: 6.263806e-01	ci right 6.453402e-01	k: 6359	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
CRKL   10000 perm   2 sec   (6144 perm/sec)   p_kst 7.949000e-01   p_cons 6.359000e-01   p_joint 8.567000e-01

Outputting figure to mutsig2_images.part000000000043/CRKL.2_924_10000_0.7949_0.6359_0.8567.png
                gene_name: CRKL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 87 percent done.
CRTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
Cons ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
KS ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
CRTC1   10000 perm   3 sec   (3539 perm/sec)   p_kst 2.680000e-02   p_cons 1.193000e-01   p_joint 9.020000e-02

Joint ci ratio: 1.715026e-02	ci left: 7.168918e-01	ci right 7.293433e-01	k: 14463	n:20000
Cons ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
KS ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
CRTC1   20000 perm   6 sec   (3264 perm/sec)   p_kst 2.860000e-02   p_cons 1.072000e-01   p_joint 7.231500e-01

Joint ci ratio: 9.228204e-02	ci left: 5.410936e-02	ci right 5.937689e-02	k: 1701	n:30000
Cons ci ratio: 6.547273e-02	ci left: 1.032280e-01	ci right 1.102484e-01	k: 3201	n:30000
KS ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
CRTC1   30000 perm   13 sec   (2305 perm/sec)   p_kst 2.810000e-02   p_cons 1.067000e-01   p_joint 5.670000e-02

Joint ci ratio: 1.141239e-01	ci left: 2.701267e-02	ci right 3.030623e-02	k: 1145	n:40000
Cons ci ratio: 5.638631e-02	ci left: 1.047522e-01	ci right 1.108549e-01	k: 4311	n:40000
KS ci ratio: 1.143295e-01	ci left: 2.691545e-02	ci right 3.020347e-02	k: 1141	n:40000
CRTC1   40000 perm   15 sec   (2651 perm/sec)   p_kst 2.852500e-02   p_cons 1.077750e-01   p_joint 2.862500e-02

Joint ci ratio: 3.449525e-02	ci left: 2.017071e-01	ci right 2.088071e-01	k: 10262	n:50000
Cons ci ratio: 5.037595e-02	ci left: 1.052923e-01	ci right 1.107533e-01	k: 5400	n:50000
KS ci ratio: 1.019842e-01	ci left: 2.723445e-02	ci right 3.018061e-02	k: 1434	n:50000
CRTC1   50000 perm   17 sec   (2906 perm/sec)   p_kst 2.868000e-02   p_cons 1.080000e-01   p_joint 2.052400e-01

Joint ci ratio: 2.418890e-02	ci left: 3.007525e-01	ci right 3.081331e-01	k: 18266	n:60000
Cons ci ratio: 4.604337e-02	ci left: 1.052962e-01	ci right 1.102752e-01	k: 6466	n:60000
KS ci ratio: 9.200413e-02	ci left: 2.801393e-02	ci right 3.073185e-02	k: 1761	n:60000
CRTC1   60000 perm   19 sec   (3090 perm/sec)   p_kst 2.935000e-02   p_cons 1.077667e-01   p_joint 3.044333e-01

Outputting figure to mutsig2_images.part000000000043/CRTC1.2_2013_60000_0.02935_0.10777_0.30443.png
                gene_name: CRTC1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 89 percent done.
CRY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
Cons ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
KS ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
CRY2   10000 perm   2 sec   (6457 perm/sec)   p_kst 5.846000e-01   p_cons 2.809000e-01   p_joint 7.109000e-01

Outputting figure to mutsig2_images.part000000000043/CRY2.2_1925_10000_0.5846_0.2809_0.7109.png
                gene_name: CRY2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 91 percent done.
CRYBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
Cons ci ratio: 4.075725e-03	ci left: 9.871939e-01	ci right 9.913137e-01	k: 9894	n:10000
KS ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
CRYBB1   10000 perm   1 sec   (7331 perm/sec)   p_kst 1.551000e-01   p_cons 9.894000e-01   p_joint 5.745000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBB1.2_779_10000_0.1551_0.9894_0.5745.png
                gene_name: CRYBB1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 93 percent done.
CRYBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
Cons ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
KS ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
CRYBB2   10000 perm   1 sec   (6902 perm/sec)   p_kst 3.091000e-01   p_cons 2.738000e-01   p_joint 8.207000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBB2.2_638_10000_0.3091_0.2738_0.8207.png
                gene_name: CRYBB2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 96 percent done.
CSAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
KS ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
CSAG1   10000 perm   2 sec   (6061 perm/sec)   p_kst 6.601000e-01   p_cons 9.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CSAG1.2_249_10000_0.6601_0.9127_1.png
                gene_name: CSAG1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CSDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
KS ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
CSDA   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.666000e-01   p_cons 6.570000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
KS ci ratio: 1.516204e-02	ci left: 7.638010e-01	ci right 7.755205e-01	k: 15394	n:20000
CSDA   20000 perm   5 sec   (4399 perm/sec)   p_kst 7.697000e-01   p_cons 4.780000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.013455e-01	ci left: 4.508777e-02	ci right 4.993367e-02	k: 1424	n:30000
KS ci ratio: 1.239954e-02	ci left: 7.643224e-01	ci right 7.738921e-01	k: 23074	n:30000
CSDA   30000 perm   8 sec   (3869 perm/sec)   p_kst 7.691333e-01   p_cons 4.746667e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.806048e-02	ci left: 4.511775e-02	ci right 4.929830e-02	k: 1887	n:40000
KS ci ratio: 1.072571e-02	ci left: 7.653911e-01	ci right 7.736697e-01	k: 30782	n:40000
CSDA   40000 perm   10 sec   (4113 perm/sec)   p_kst 7.695500e-01   p_cons 4.717500e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CSDA.2_1155_40000_0.76955_0.047175_1.png
                gene_name: CSDA
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000043
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 43 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4421852: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000044> was used as the working directory.
Started at Wed Oct 24 17:37:09 2012
Results reported at Wed Oct 24 17:46:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000044.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000044.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 44  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000044.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    554.32 sec.
    Max Memory :      5335 MB
    Max Swap   :      7672 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
44
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 44
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 44: processing genes 3891 - 3981
Calculating significance of each gene.
Using projection method.
3891	CSF2	1
3892	CSF2RA	9.435003e-01
3893	CSF2RB	1
3894	CSF3	1
3895	CSF3R	9.945285e-01
3896	CSGALNACT1	1.311066e-01
3897	CSGALNACT2	1.780757e-02
3898	CSH1	4.125800e-01
3899	CSH2	7.832546e-01
3900	CSHL1	5.597363e-01
3901	CSK	1
3902	CSMD1	1
3903	CSMD2	1
3904	CSMD3	1
3905	CSN1S1	5.081764e-02
3906	CSN2	3.887770e-02
3907	CSN3	7.640955e-02
3908	CSNK1A1	9.080286e-01
3909	CSNK1A1L	5.914635e-02
3910	CSNK1D	6.463550e-01
3911	CSNK1E	1.689841e-01
3912	CSNK1G1	1
3913	CSNK1G2	8.282350e-01
3914	CSNK1G3	4.381082e-01
3915	CSNK2A1	1
3916	CSNK2A2	1
3917	CSNK2B	1
3918	CSPG4	1
3919	CSPG5	6.595998e-01
3920	CSPP1	4.639343e-01
3921	CSRNP1	1
3922	CSRNP2	8.713318e-01
3923	CSRNP3	2.632202e-01
3924	CSRP1	5.214550e-01
3925	CSRP2	1
3926	CSRP2BP	9.810875e-01
3927	CSRP3	4.429113e-01
3928	CST1	1
3929	CST11	1.639016e-01
3930	CST2	4.776811e-01
3931	CST3	1
3932	CST4	1.844548e-01
3933	CST5	1.899203e-02
3934	CST6	1
3935	CST7	1
3936	CST8	7.885625e-02
3937	CST9	1
3938	CST9L	3.265134e-01
3939	CSTA	1
3940	CSTB	3.246516e-02
3941	CSTF1	9.245704e-01
3942	CSTF2	1
3943	CSTF2T	5.984789e-01
3944	CSTF3	8.291144e-01
3945	CSTL1	1
3946	CT45A5	8.345391e-02
3947	CT47B1	1
3948	CT62	1
3949	CTAG2	3.823033e-01
3950	CTAGE1	9.429941e-01
3951	CTAGE5	6.744369e-01
3952	CTAGE6P	1
3953	CTAGE9	9.525101e-01
3954	CTBP1	1
3955	CTBP2	1
3956	CTBS	1
3957	CTCF	1
3958	CTCFL	1.336321e-02
3959	CTDP1	1
3960	CTDSP1	5.333184e-01
3961	CTDSP2	1
3962	CTDSPL	6.408433e-01
3963	CTDSPL2	8.170034e-01
3964	CTGF	7.678822e-01
3965	CTH	8.253849e-01
3966	CTHRC1	1
3967	CTLA4	7.093764e-01
3968	CTNNA1	9.870105e-01
3969	CTNNA2	3.129433e-04
3970	CTNNA3	2.727233e-01
3971	CTNNAL1	7.224257e-01
3972	CTNNB1	3.408103e-02
3973	CTNNBIP1	1
3974	CTNNBL1	6.619169e-01
3975	CTNND1	1.732993e-01
3976	CTNND2	1
3977	CTNS	1
3978	CTPS	6.581352e-01
3979	CTPS2	3.931494e-01
3980	CTR9	9.950429e-01
3981	CTRC	1.902004e-02
Done

Running MutSig 2:
Scatter job 44: processing genes 3891 - 3981
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CSMD3
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
Cons ci ratio: 2.717994e-02	ci left: 6.660222e-01	ci right 6.844756e-01	k: 6753	n:10000
KS ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
CSMD3   10000 perm   7 sec   (1454 perm/sec)   p_kst 6.436000e-01   p_cons 6.753000e-01   p_joint 7.600000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD3.160_11470_10000_0.6436_0.6753_0.76.png
                gene_name: CSMD3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 2 percent done.
CSMD1
Processing conservation and coverage...
92% 
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
Cons ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
KS ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
CSMD1   10000 perm   4 sec   (2766 perm/sec)   p_kst 8.910000e-02   p_cons 1.880000e-02   p_joint 1.910000e-02

Joint ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
Cons ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
KS ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
CSMD1   20000 perm   8 sec   (2618 perm/sec)   p_kst 8.715000e-02   p_cons 1.705000e-02   p_joint 2.720000e-02

Joint ci ratio: 1.519584e-01	ci left: 2.004894e-02	ci right 2.337792e-02	k: 650	n:30000
Cons ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
KS ci ratio: 7.291833e-02	ci left: 8.465371e-02	ci right 9.109303e-02	k: 2635	n:30000
CSMD1   30000 perm   12 sec   (2559 perm/sec)   p_kst 8.783333e-02   p_cons 2.263333e-02   p_joint 2.166667e-02

Joint ci ratio: 1.171583e-01	ci left: 2.562780e-02	ci right 2.884133e-02	k: 1088	n:40000
Cons ci ratio: 1.273179e-01	ci left: 2.167428e-02	ci right 2.464550e-02	k: 925	n:40000
KS ci ratio: 6.307722e-02	ci left: 8.526588e-02	ci right 9.084409e-02	k: 3521	n:40000
CSMD1   40000 perm   16 sec   (2520 perm/sec)   p_kst 8.802500e-02   p_cons 2.312500e-02   p_joint 2.720000e-02

Joint ci ratio: 1.111310e-01	ci left: 2.292910e-02	ci right 2.564652e-02	k: 1213	n:50000
Cons ci ratio: 1.142563e-01	ci left: 2.168437e-02	ci right 2.433141e-02	k: 1149	n:50000
KS ci ratio: 5.656969e-02	ci left: 8.513595e-02	ci right 9.011204e-02	k: 4380	n:50000
CSMD1   50000 perm   20 sec   (2488 perm/sec)   p_kst 8.760000e-02   p_cons 2.298000e-02   p_joint 2.426000e-02

Joint ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
Cons ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
KS ci ratio: 5.151320e-02	ci left: 8.574484e-02	ci right 9.029510e-02	k: 5280	n:60000
CSMD1   60000 perm   24 sec   (2451 perm/sec)   p_kst 8.800000e-02   p_cons 2.295000e-02   p_joint 2.041667e-02

Joint ci ratio: 1.034117e-01	ci left: 1.907313e-02	ci right 2.116691e-02	k: 1407	n:70000
Cons ci ratio: 9.553698e-02	ci left: 2.236254e-02	ci right 2.462005e-02	k: 1643	n:70000
KS ci ratio: 4.741476e-02	ci left: 8.684402e-02	ci right 9.107584e-02	k: 6226	n:70000
CSMD1   70000 perm   29 sec   (2428 perm/sec)   p_kst 8.894286e-02   p_cons 2.347143e-02   p_joint 2.010000e-02

Joint ci ratio: 1.008786e-01	ci left: 1.758967e-02	ci right 1.947047e-02	k: 1481	n:80000
Cons ci ratio: 8.943640e-02	ci left: 2.240020e-02	ci right 2.450955e-02	k: 1875	n:80000
KS ci ratio: 4.448148e-02	ci left: 8.651582e-02	ci right 9.046408e-02	k: 7078	n:80000
CSMD1   80000 perm   33 sec   (2406 perm/sec)   p_kst 8.847500e-02   p_cons 2.343750e-02   p_joint 1.851250e-02

Joint ci ratio: 9.500051e-02	ci left: 1.768389e-02	ci right 1.945844e-02	k: 1670	n:90000
Cons ci ratio: 8.445477e-02	ci left: 2.238956e-02	ci right 2.437466e-02	k: 2103	n:90000
KS ci ratio: 4.195455e-02	ci left: 8.656412e-02	ci right 9.028468e-02	k: 7957	n:90000
CSMD1   90000 perm   38 sec   (2382 perm/sec)   p_kst 8.841111e-02   p_cons 2.336667e-02   p_joint 1.855556e-02

Outputting figure to mutsig2_images.part000000000044/CSMD1.64_10788_90000_0.088411_0.023367_0.018556.png
                gene_name: CSMD1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 4 percent done.
CSMD2
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
CSMD2   10000 perm   3 sec   (3219 perm/sec)   p_kst 7.989000e-01   p_cons 6.440000e-02   p_joint 2.572000e-01

Joint ci ratio: 5.004558e-02	ci left: 2.288403e-01	ci right 2.406369e-01	k: 4694	n:20000
Cons ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
KS ci ratio: 1.386172e-02	ci left: 7.943374e-01	ci right 8.054752e-01	k: 15999	n:20000
CSMD2   20000 perm   7 sec   (3003 perm/sec)   p_kst 7.999500e-01   p_cons 6.215000e-02   p_joint 2.347000e-01

Joint ci ratio: 3.833753e-02	ci left: 2.534533e-01	ci right 2.633935e-01	k: 7752	n:30000
Cons ci ratio: 8.047054e-02	ci left: 7.034281e-02	ci right 7.627347e-02	k: 2198	n:30000
KS ci ratio: 1.133506e-02	ci left: 7.948902e-01	ci right 8.039850e-01	k: 23984	n:30000
CSMD2   30000 perm   10 sec   (2911 perm/sec)   p_kst 7.994667e-01   p_cons 7.326667e-02   p_joint 2.584000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD2.40_10740_30000_0.79947_0.073267_0.2584.png
                gene_name: CSMD2
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 6 percent done.
CTNNA2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KS ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
CTNNA2   10000 perm   2 sec   (4497 perm/sec)   p_kst 7.260000e-02   p_cons 4.644000e-01   p_joint 1.585000e-01

Joint ci ratio: 7.502540e-02	ci left: 1.155760e-01	ci right 1.246348e-01	k: 2401	n:20000
Cons ci ratio: 2.926746e-02	ci left: 4.658601e-01	ci right 4.797478e-01	k: 9456	n:20000
KS ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
CTNNA2   20000 perm   5 sec   (4144 perm/sec)   p_kst 7.375000e-02   p_cons 4.728000e-01   p_joint 1.200500e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA2.27_2578_20000_0.07375_0.4728_0.12005.png
                gene_name: CTNNA2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
CTNND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
Cons ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
CTNND2   10000 perm   2 sec   (4685 perm/sec)   p_kst 2.750000e-02   p_cons 2.451000e-01   p_joint 8.880000e-02

Joint ci ratio: 1.304457e-01	ci left: 4.037551e-02	ci right 4.605825e-02	k: 863	n:20000
Cons ci ratio: 4.884985e-02	ci left: 2.375644e-01	ci right 2.495102e-01	k: 4870	n:20000
KS ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
CTNND2   20000 perm   5 sec   (4314 perm/sec)   p_kst 2.820000e-02   p_cons 2.435000e-01   p_joint 4.315000e-02

Joint ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
Cons ci ratio: 4.340381e-02	ci left: 2.091057e-01	ci right 2.184164e-01	k: 6412	n:30000
KS ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
CTNND2   30000 perm   7 sec   (4175 perm/sec)   p_kst 2.900000e-02   p_cons 2.137333e-01   p_joint 3.433333e-02

Joint ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
Cons ci ratio: 3.773955e-02	ci left: 2.084003e-01	ci right 2.164415e-01	k: 8496	n:40000
KS ci ratio: 1.152152e-01	ci left: 2.650232e-02	ci right 2.976666e-02	k: 1124	n:40000
CTNND2   40000 perm   10 sec   (4070 perm/sec)   p_kst 2.810000e-02   p_cons 2.124000e-01   p_joint 3.165000e-02

Joint ci ratio: 9.398794e-02	ci left: 3.203766e-02	ci right 3.521679e-02	k: 1680	n:50000
Cons ci ratio: 3.279525e-02	ci left: 2.185822e-01	ci right 2.258901e-01	k: 11111	n:50000
KS ci ratio: 1.035167e-01	ci left: 2.643495e-02	ci right 2.934021e-02	k: 1393	n:50000
CTNND2   50000 perm   13 sec   (3983 perm/sec)   p_kst 2.786000e-02   p_cons 2.222200e-01   p_joint 3.360000e-02

Joint ci ratio: 7.498205e-02	ci left: 4.193074e-02	ci right 4.521360e-02	k: 2613	n:60000
Cons ci ratio: 2.843000e-02	ci left: 2.371840e-01	ci right 2.440411e-01	k: 14436	n:60000
KS ci ratio: 9.394441e-02	ci left: 2.687364e-02	ci right 2.953893e-02	k: 1691	n:60000
CTNND2   60000 perm   15 sec   (3911 perm/sec)   p_kst 2.818333e-02   p_cons 2.406000e-01   p_joint 4.355000e-02

Outputting figure to mutsig2_images.part000000000044/CTNND2.29_3766_60000_0.028183_0.2406_0.04355.png
                gene_name: CTNND2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 10 percent done.
CTCFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
Cons ci ratio: 5.309370e-02	ci left: 3.433291e-01	ci right 3.621567e-01	k: 3527	n:10000
KS ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
CTCFL   10000 perm   2 sec   (5157 perm/sec)   p_kst 9.014000e-01   p_cons 3.527000e-01   p_joint 8.286000e-01

Outputting figure to mutsig2_images.part000000000044/CTCFL.16_2032_10000_0.9014_0.3527_0.8286.png
                gene_name: CTCFL
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 12 percent done.
CSGALNACT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
Cons ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
KS ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
CSGALNACT2   10000 perm   2 sec   (5796 perm/sec)   p_kst 4.364000e-01   p_cons 3.750000e-02   p_joint 1.117000e-01

Joint ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
Cons ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
KS ci ratio: 3.180671e-02	ci left: 4.247210e-01	ci right 4.384989e-01	k: 8632	n:20000
CSGALNACT2   20000 perm   4 sec   (5222 perm/sec)   p_kst 4.316000e-01   p_cons 3.425000e-02   p_joint 1.235500e-01

Joint ci ratio: 6.347113e-02	ci left: 1.092083e-01	ci right 1.164002e-01	k: 3383	n:30000
Cons ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
KS ci ratio: 2.721323e-02	ci left: 4.032626e-01	ci right 4.144217e-01	k: 12265	n:30000
CSGALNACT2   30000 perm   6 sec   (5015 perm/sec)   p_kst 4.088333e-01   p_cons 3.470000e-02   p_joint 1.127667e-01

Joint ci ratio: 5.392913e-02	ci left: 1.135196e-01	ci right 1.198361e-01	k: 4666	n:40000
Cons ci ratio: 1.045915e-01	ci left: 3.214791e-02	ci right 3.572017e-02	k: 1356	n:40000
KS ci ratio: 2.353646e-02	ci left: 4.046503e-01	ci right 4.143129e-01	k: 16379	n:40000
CSGALNACT2   40000 perm   8 sec   (4859 perm/sec)   p_kst 4.094750e-01   p_cons 3.390000e-02   p_joint 1.166500e-01

Joint ci ratio: 4.764029e-02	ci left: 1.164116e-01	ci right 1.221127e-01	k: 5962	n:50000
Cons ci ratio: 9.466012e-02	ci left: 3.158816e-02	ci right 3.474635e-02	k: 1657	n:50000
KS ci ratio: 2.113718e-02	ci left: 4.032085e-01	ci right 4.118423e-01	k: 20376	n:50000
CSGALNACT2   50000 perm   11 sec   (4739 perm/sec)   p_kst 4.075200e-01   p_cons 3.314000e-02   p_joint 1.192400e-01

Outputting figure to mutsig2_images.part000000000044/CSGALNACT2.11_1657_50000_0.40752_0.03314_0.11924.png
                gene_name: CSGALNACT2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
CSPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
CSPP1   10000 perm   2 sec   (4719 perm/sec)   p_kst 1.666000e-01   p_cons 5.237000e-01   p_joint 2.566000e-01

Outputting figure to mutsig2_images.part000000000044/CSPP1.11_3895_10000_0.1666_0.5237_0.2566.png
                gene_name: CSPP1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 15 percent done.
CTNNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 3.975457e-02	ci left: 4.830544e-01	ci right 5.027497e-01	k: 4929	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
CTNNA3   10000 perm   2 sec   (5363 perm/sec)   p_kst 2.621000e-01   p_cons 4.929000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA3.11_2756_10000_0.2621_0.4929_0.3446.png
                gene_name: CTNNA3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
CTNNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
Cons ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
CTNNB1   10000 perm   2 sec   (5714 perm/sec)   p_kst 1.391000e-01   p_cons 3.766000e-01   p_joint 1.700000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNB1.11_2402_10000_0.1391_0.3766_0.17.png
                gene_name: CTNNB1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 19 percent done.
CSGALNACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
CSGALNACT1   10000 perm   2 sec   (5760 perm/sec)   p_kst 1.004000e-01   p_cons 1.714000e-01   p_joint 1.544000e-01

Joint ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
Cons ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
KS ci ratio: 8.607760e-02	ci left: 8.989170e-02	ci right 9.802679e-02	k: 1878	n:20000
CSGALNACT1   20000 perm   4 sec   (5260 perm/sec)   p_kst 9.390000e-02   p_cons 1.613500e-01   p_joint 1.090000e-01

Outputting figure to mutsig2_images.part000000000044/CSGALNACT1.9_1627_20000_0.0939_0.16135_0.109.png
                gene_name: CSGALNACT1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 21 percent done.
CSRNP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
KS ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
CSRNP3   10000 perm   2 sec   (6137 perm/sec)   p_kst 7.581000e-01   p_cons 5.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRNP3.9_1774_10000_0.7581_0.5977_1.png
                gene_name: CSRNP3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
CTNND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
Cons ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
KS ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
CTNND1   10000 perm   2 sec   (5475 perm/sec)   p_kst 1.462000e-01   p_cons 1.885000e-01   p_joint 1.243000e-01

Joint ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
Cons ci ratio: 6.065605e-02	ci left: 1.674843e-01	ci right 1.780110e-01	k: 3454	n:20000
KS ci ratio: 6.926064e-02	ci left: 1.332479e-01	ci right 1.428576e-01	k: 2760	n:20000
CTNND1   20000 perm   4 sec   (5011 perm/sec)   p_kst 1.380000e-01   p_cons 1.727000e-01   p_joint 1.187000e-01

Outputting figure to mutsig2_images.part000000000044/CTNND1.9_2983_20000_0.138_0.1727_0.1187.png
                gene_name: CTNND1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 25 percent done.
CSPG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
Cons ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
CSPG4   10000 perm   2 sec   (4800 perm/sec)   p_kst 8.280000e-02   p_cons 9.732000e-01   p_joint 2.308000e-01

Joint ci ratio: 5.581171e-02	ci left: 1.922986e-01	ci right 2.033894e-01	k: 3956	n:20000
Cons ci ratio: 4.378433e-03	ci left: 9.734706e-01	ci right 9.777896e-01	k: 19514	n:20000
KS ci ratio: 9.563005e-02	ci left: 7.378204e-02	ci right 8.124134e-02	k: 1549	n:20000
CSPG4   20000 perm   5 sec   (4370 perm/sec)   p_kst 7.745000e-02   p_cons 9.757000e-01   p_joint 1.978000e-01

Outputting figure to mutsig2_images.part000000000044/CSPG4.7_7009_20000_0.07745_0.9757_0.1978.png
                gene_name: CSPG4
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 27 percent done.
CSNK1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
Cons ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
KS ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
CSNK1E   10000 perm   1 sec   (7008 perm/sec)   p_kst 4.946000e-01   p_cons 5.495000e-01   p_joint 6.141000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1E.6_1287_10000_0.4946_0.5495_0.6141.png
                gene_name: CSNK1E
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
CTRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
Cons ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
KS ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
CTRC   10000 perm   2 sec   (6302 perm/sec)   p_kst 5.200000e-03   p_cons 1.983000e-01   p_joint 5.120000e-02

Joint ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
Cons ci ratio: 5.327993e-02	ci left: 2.072932e-01	ci right 2.186903e-01	k: 4259	n:20000
KS ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
CTRC   20000 perm   4 sec   (5670 perm/sec)   p_kst 5.750000e-03   p_cons 2.129500e-01   p_joint 3.785000e-02

Joint ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
Cons ci ratio: 4.362887e-02	ci left: 2.073863e-01	ci right 2.166695e-01	k: 6360	n:30000
KS ci ratio: 2.827322e-01	ci left: 5.467054e-03	ci right 7.297185e-03	k: 190	n:30000
CTRC   30000 perm   6 sec   (5430 perm/sec)   p_kst 6.333333e-03   p_cons 2.120000e-01   p_joint 2.356667e-02

Joint ci ratio: 1.613008e-01	ci left: 1.337538e-02	ci right 1.574586e-02	k: 581	n:40000
Cons ci ratio: 3.863611e-02	ci left: 2.007054e-01	ci right 2.086376e-01	k: 8186	n:40000
KS ci ratio: 2.442117e-01	ci left: 5.618552e-03	ci right 7.204386e-03	k: 255	n:40000
CTRC   40000 perm   8 sec   (5257 perm/sec)   p_kst 6.375000e-03   p_cons 2.046500e-01   p_joint 1.452500e-02

Joint ci ratio: 1.633956e-01	ci left: 1.044955e-02	ci right 1.232782e-02	k: 568	n:50000
Cons ci ratio: 3.453972e-02	ci left: 2.012898e-01	ci right 2.083845e-01	k: 10241	n:50000
KS ci ratio: 2.147462e-01	ci left: 5.909029e-03	ci right 7.349151e-03	k: 330	n:50000
CTRC   50000 perm   10 sec   (5131 perm/sec)   p_kst 6.600000e-03   p_cons 2.048200e-01   p_joint 1.136000e-02

Joint ci ratio: 1.642828e-01	ci left: 8.627360e-03	ci right 1.018731e-02	k: 563	n:60000
Cons ci ratio: 3.147945e-02	ci left: 2.021237e-01	ci right 2.086048e-01	k: 12321	n:60000
KS ci ratio: 1.981049e-01	ci left: 5.840935e-03	ci right 7.140827e-03	k: 388	n:60000
CTRC   60000 perm   12 sec   (5022 perm/sec)   p_kst 6.466667e-03   p_cons 2.053500e-01   p_joint 9.383333e-03

Joint ci ratio: 1.615316e-01	ci left: 7.668634e-03	ci right 9.029736e-03	k: 583	n:70000
Cons ci ratio: 2.916432e-02	ci left: 2.021424e-01	ci right 2.081392e-01	k: 14359	n:70000
KS ci ratio: 1.821681e-01	ci left: 5.972628e-03	ci right 7.183105e-03	k: 459	n:70000
CTRC   70000 perm   14 sec   (4918 perm/sec)   p_kst 6.557143e-03   p_cons 2.051286e-01   p_joint 8.328571e-03

Joint ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
Cons ci ratio: 2.728328e-02	ci left: 2.023065e-01	ci right 2.079149e-01	k: 16408	n:80000
KS ci ratio: 1.705195e-01	ci left: 6.002724e-03	ci right 7.133507e-03	k: 524	n:80000
CTRC   80000 perm   17 sec   (4823 perm/sec)   p_kst 6.550000e-03   p_cons 2.051000e-01   p_joint 7.887500e-03

Joint ci ratio: 1.014377e-01	ci left: 1.549362e-02	ci right 1.715999e-02	k: 1468	n:90000
Cons ci ratio: 2.575551e-02	ci left: 2.020569e-01	ci right 2.073399e-01	k: 18422	n:90000
KS ci ratio: 1.603070e-01	ci left: 6.070722e-03	ci right 7.139230e-03	k: 593	n:90000
CTRC   90000 perm   19 sec   (4740 perm/sec)   p_kst 6.588889e-03   p_cons 2.046889e-01   p_joint 1.631111e-02

Joint ci ratio: 9.739813e-02	ci left: 1.516305e-02	ci right 1.672521e-02	k: 1593	n:100000
Cons ci ratio: 2.441733e-02	ci left: 2.024119e-01	ci right 2.074253e-01	k: 20491	n:100000
KS ci ratio: 1.527813e-01	ci left: 6.040147e-03	ci right 7.048795e-03	k: 653	n:100000
CTRC   100000 perm   21 sec   (4655 perm/sec)   p_kst 6.530000e-03   p_cons 2.049100e-01   p_joint 1.593000e-02

Joint ci ratio: 8.770545e-02	ci left: 1.705349e-02	ci right 1.862662e-02	k: 1961	n:110000
Cons ci ratio: 2.330391e-02	ci left: 2.022103e-01	ci right 2.069871e-01	k: 22505	n:110000
KS ci ratio: 1.484380e-01	ci left: 5.832181e-03	ci right 6.775952e-03	k: 692	n:110000
CTRC   110000 perm   24 sec   (4579 perm/sec)   p_kst 6.290909e-03   p_cons 2.045909e-01   p_joint 1.782727e-02

Joint ci ratio: 8.765834e-02	ci left: 1.567263e-02	ci right 1.711755e-02	k: 1966	n:120000
Cons ci ratio: 2.230666e-02	ci left: 2.023869e-01	ci right 2.069607e-01	k: 24560	n:120000
KS ci ratio: 1.424032e-01	ci left: 5.827976e-03	ci right 6.729467e-03	k: 752	n:120000
CTRC   120000 perm   27 sec   (4497 perm/sec)   p_kst 6.266667e-03   p_cons 2.046667e-01   p_joint 1.638333e-02

Joint ci ratio: 7.973247e-02	ci left: 1.752552e-02	ci right 1.898839e-02	k: 2372	n:130000
Cons ci ratio: 2.143750e-02	ci left: 2.023869e-01	ci right 2.067802e-01	k: 26595	n:130000
KS ci ratio: 1.298504e-01	ci left: 6.509301e-03	ci right 7.420592e-03	k: 904	n:130000
CTRC   130000 perm   29 sec   (4411 perm/sec)   p_kst 6.953846e-03   p_cons 2.045769e-01   p_joint 1.824615e-02

Joint ci ratio: 7.824004e-02	ci left: 1.692465e-02	ci right 1.830972e-02	k: 2465	n:140000
Cons ci ratio: 2.068441e-02	ci left: 2.020483e-01	ci right 2.062783e-01	k: 28582	n:140000
KS ci ratio: 1.251021e-01	ci left: 6.528412e-03	ci right 7.406480e-03	k: 974	n:140000
CTRC   140000 perm   32 sec   (4346 perm/sec)   p_kst 6.957143e-03   p_cons 2.041571e-01   p_joint 1.760714e-02

Joint ci ratio: 8.237225e-02	ci left: 1.426029e-02	ci right 1.549190e-02	k: 2230	n:150000
Cons ci ratio: 1.999807e-02	ci left: 2.018768e-01	ci right 2.059613e-01	k: 30587	n:150000
KS ci ratio: 1.205493e-01	ci left: 6.577835e-03	ci right 7.428056e-03	k: 1049	n:150000
CTRC   150000 perm   35 sec   (4282 perm/sec)   p_kst 6.993333e-03   p_cons 2.039133e-01   p_joint 1.486667e-02

Joint ci ratio: 8.156254e-02	ci left: 1.365046e-02	ci right 1.481724e-02	k: 2276	n:160000
Cons ci ratio: 1.936760e-02	ci left: 2.018658e-01	ci right 2.058199e-01	k: 32614	n:160000
KS ci ratio: 1.170904e-01	ci left: 6.548762e-03	ci right 7.369257e-03	k: 1112	n:160000
CTRC   160000 perm   38 sec   (4219 perm/sec)   p_kst 6.950000e-03   p_cons 2.038375e-01   p_joint 1.422500e-02

Joint ci ratio: 7.994092e-02	ci left: 1.338919e-02	ci right 1.450983e-02	k: 2370	n:170000
Cons ci ratio: 1.877350e-02	ci left: 2.021979e-01	ci right 2.060357e-01	k: 34699	n:170000
KS ci ratio: 1.135249e-01	ci left: 6.569147e-03	ci right 7.365454e-03	k: 1183	n:170000
CTRC   170000 perm   41 sec   (4157 perm/sec)   p_kst 6.958824e-03   p_cons 2.041118e-01   p_joint 1.394118e-02

Joint ci ratio: 7.805951e-02	ci left: 1.327703e-02	ci right 1.436094e-02	k: 2486	n:180000
Cons ci ratio: 1.824337e-02	ci left: 2.022733e-01	ci right 2.060029e-01	k: 36744	n:180000
KS ci ratio: 1.103108e-01	ci left: 6.582200e-03	ci right 7.356030e-03	k: 1253	n:180000
CTRC   180000 perm   44 sec   (4101 perm/sec)   p_kst 6.961111e-03   p_cons 2.041333e-01   p_joint 1.381111e-02

Joint ci ratio: 8.129489e-02	ci left: 1.159774e-02	ci right 1.258565e-02	k: 2296	n:190000
Cons ci ratio: 1.776093e-02	ci left: 2.022477e-01	ci right 2.058772e-01	k: 38771	n:190000
KS ci ratio: 1.071515e-01	ci left: 6.619777e-03	ci right 7.374330e-03	k: 1328	n:190000
CTRC   190000 perm   47 sec   (4045 perm/sec)   p_kst 6.989474e-03   p_cons 2.040579e-01   p_joint 1.208421e-02

Joint ci ratio: 7.655519e-02	ci left: 1.244436e-02	ci right 1.343983e-02	k: 2587	n:200000
Cons ci ratio: 1.730685e-02	ci left: 2.023753e-01	ci right 2.059133e-01	k: 40828	n:200000
KS ci ratio: 1.042116e-01	ci left: 6.658751e-03	ci right 7.395646e-03	k: 1404	n:200000
CTRC   200000 perm   50 sec   (3991 perm/sec)   p_kst 7.020000e-03   p_cons 2.041400e-01   p_joint 1.293500e-02

Joint ci ratio: 7.464624e-02	ci left: 1.247781e-02	ci right 1.344999e-02	k: 2721	n:210000
Cons ci ratio: 1.688888e-02	ci left: 2.024349e-01	ci right 2.058876e-01	k: 42873	n:210000
KS ci ratio: 1.015011e-01	ci left: 6.694269e-03	ci right 7.414677e-03	k: 1480	n:210000
CTRC   210000 perm   53 sec   (3938 perm/sec)   p_kst 7.047619e-03   p_cons 2.041571e-01   p_joint 1.295714e-02

Joint ci ratio: 7.471022e-02	ci left: 1.189712e-02	ci right 1.282488e-02	k: 2718	n:220000
Cons ci ratio: 1.651459e-02	ci left: 2.021999e-01	ci right 2.055715e-01	k: 44854	n:220000
KS ci ratio: 9.905573e-02	ci left: 6.717916e-03	ci right 7.422438e-03	k: 1554	n:220000
CTRC   220000 perm   57 sec   (3883 perm/sec)   p_kst 7.063636e-03   p_cons 2.038818e-01   p_joint 1.235455e-02

Outputting figure to mutsig2_images.part000000000044/CTRC.6_839_220000_0.0070636_0.20388_0.012355.png
                gene_name: CTRC
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0071 
        ci_ks_bounds_left: 0.0067 
       ci_ks_bounds_right: 0.0074 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 31 percent done.
CSF2RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454625e-01	ci left: 6.275582e-02	ci right 7.269780e-02	k: 676	n:10000
Cons ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KS ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
CSF2RA   10000 perm   2 sec   (6539 perm/sec)   p_kst 1.026000e-01   p_cons 2.138000e-01   p_joint 6.760000e-02

Joint ci ratio: 7.561694e-02	ci left: 1.139531e-01	ci right 1.229581e-01	k: 2368	n:20000
Cons ci ratio: 5.066631e-02	ci left: 2.244795e-01	ci right 2.361990e-01	k: 4606	n:20000
KS ci ratio: 8.371335e-02	ci left: 9.464903e-02	ci right 1.029680e-01	k: 1975	n:20000
CSF2RA   20000 perm   3 sec   (5851 perm/sec)   p_kst 9.875000e-02   p_cons 2.303000e-01   p_joint 1.184000e-01

Outputting figure to mutsig2_images.part000000000044/CSF2RA.5_1575_20000_0.09875_0.2303_0.1184.png
                gene_name: CSF2RA
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
CSF2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
Cons ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
KS ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
CSF2RB   10000 perm   2 sec   (6056 perm/sec)   p_kst 6.340000e-01   p_cons 6.441000e-01   p_joint 8.451000e-01

Outputting figure to mutsig2_images.part000000000044/CSF2RB.5_2746_10000_0.634_0.6441_0.8451.png
                gene_name: CSF2RB
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 35 percent done.
CSNK1A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
KS ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
CSNK1A1L   10000 perm   2 sec   (6538 perm/sec)   p_kst 9.579000e-01   p_cons 5.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSNK1A1L.5_1018_10000_0.9579_0.5452_1.png
                gene_name: CSNK1A1L
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
CT47B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
Cons ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
KS ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
CT47B1   10000 perm   2 sec   (6641 perm/sec)   p_kst 7.520000e-01   p_cons 8.150000e-02   p_joint 2.282000e-01

Joint ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
Cons ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
KS ci ratio: 1.684219e-02	ci left: 7.241415e-01	ci right 7.364915e-01	k: 14607	n:20000
CT47B1   20000 perm   3 sec   (5945 perm/sec)   p_kst 7.303500e-01   p_cons 7.890000e-02   p_joint 1.647000e-01

Outputting figure to mutsig2_images.part000000000044/CT47B1.5_908_20000_0.73035_0.0789_0.1647.png
                gene_name: CT47B1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
CTAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
CTAGE1   10000 perm   2 sec   (6345 perm/sec)   p_kst 1.150000e-01   p_cons 2.275000e-01   p_joint 1.329000e-01

Joint ci ratio: 7.047964e-02	ci left: 1.292088e-01	ci right 1.386979e-01	k: 2678	n:20000
Cons ci ratio: 4.712363e-02	ci left: 2.509546e-01	ci right 2.631162e-01	k: 5140	n:20000
KS ci ratio: 7.713935e-02	ci left: 1.099217e-01	ci right 1.187908e-01	k: 2286	n:20000
CTAGE1   20000 perm   4 sec   (5711 perm/sec)   p_kst 1.143000e-01   p_cons 2.570000e-01   p_joint 1.339000e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE1.5_2242_20000_0.1143_0.257_0.1339.png
                gene_name: CTAGE1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 40 percent done.
CTAGE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
Cons ci ratio: 2.306618e-02	ci left: 7.341133e-01	ci right 7.513451e-01	k: 7428	n:10000
KS ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
CTAGE5   10000 perm   2 sec   (6492 perm/sec)   p_kst 3.077000e-01   p_cons 7.428000e-01   p_joint 4.465000e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE5.5_2542_10000_0.3077_0.7428_0.4465.png
                gene_name: CTAGE5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 42 percent done.
CTPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
Cons ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
KS ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
CTPS   10000 perm   1 sec   (6855 perm/sec)   p_kst 3.675000e-01   p_cons 2.742000e-01   p_joint 3.135000e-01

Outputting figure to mutsig2_images.part000000000044/CTPS.5_1844_10000_0.3675_0.2742_0.3135.png
                gene_name: CTPS
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 44 percent done.
CTPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
CTPS2   10000 perm   1 sec   (6821 perm/sec)   p_kst 7.250000e-01   p_cons 6.832000e-01   p_joint 8.682000e-01

Outputting figure to mutsig2_images.part000000000044/CTPS2.5_1829_10000_0.725_0.6832_0.8682.png
                gene_name: CTPS2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 46 percent done.
CSF3R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
CSF3R   10000 perm   2 sec   (6082 perm/sec)   p_kst 5.381000e-01   p_cons 5.140000e-02   p_joint 1.144000e-01

Joint ci ratio: 6.227513e-02	ci left: 1.601760e-01	ci right 1.705215e-01	k: 3306	n:20000
Cons ci ratio: 1.213959e-01	ci left: 4.653451e-02	ci right 5.259730e-02	k: 990	n:20000
KS ci ratio: 2.575436e-02	ci left: 5.297092e-01	ci right 5.435801e-01	k: 10733	n:20000
CSF3R   20000 perm   4 sec   (5532 perm/sec)   p_kst 5.366500e-01   p_cons 4.950000e-02   p_joint 1.653000e-01

Joint ci ratio: 5.410827e-02	ci left: 1.448562e-01	ci right 1.529453e-01	k: 4466	n:30000
Cons ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
KS ci ratio: 2.127173e-02	ci left: 5.252668e-01	ci right 5.365939e-01	k: 15928	n:30000
CSF3R   30000 perm   6 sec   (5264 perm/sec)   p_kst 5.309333e-01   p_cons 5.153333e-02   p_joint 1.488667e-01

Outputting figure to mutsig2_images.part000000000044/CSF3R.4_2761_30000_0.53093_0.051533_0.14887.png
                gene_name: CSF3R
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 48 percent done.
CSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
Cons ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
KS ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
CSN2   10000 perm   1 sec   (7588 perm/sec)   p_kst 2.730000e-02   p_cons 5.632000e-01   p_joint 1.495000e-01

Joint ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
Cons ci ratio: 2.425334e-02	ci left: 5.594475e-01	ci right 5.732332e-01	k: 11327	n:20000
KS ci ratio: 1.698176e-01	ci left: 2.374280e-02	ci right 2.819646e-02	k: 518	n:20000
CSN2   20000 perm   3 sec   (6749 perm/sec)   p_kst 2.590000e-02   p_cons 5.663500e-01   p_joint 1.222000e-01

Joint ci ratio: 6.987964e-02	ci left: 9.160626e-02	ci right 9.827242e-02	k: 2847	n:30000
Cons ci ratio: 1.987382e-02	ci left: 5.589668e-01	ci right 5.702207e-01	k: 16938	n:30000
KS ci ratio: 1.356884e-01	ci left: 2.522737e-02	ci right 2.893165e-02	k: 811	n:30000
CSN2   30000 perm   5 sec   (6396 perm/sec)   p_kst 2.703333e-02   p_cons 5.646000e-01   p_joint 9.490000e-02

Joint ci ratio: 5.051412e-02	ci left: 1.275348e-01	ci right 1.341689e-01	k: 5233	n:40000
Cons ci ratio: 1.802212e-02	ci left: 5.369519e-01	ci right 5.467420e-01	k: 21674	n:40000
KS ci ratio: 1.187944e-01	ci left: 2.492365e-02	ci right 2.809559e-02	k: 1059	n:40000
CSN2   40000 perm   6 sec   (6165 perm/sec)   p_kst 2.647500e-02   p_cons 5.418500e-01   p_joint 1.308250e-01

Joint ci ratio: 5.466273e-02	ci left: 9.070501e-02	ci right 9.582232e-02	k: 4662	n:50000
Cons ci ratio: 1.536254e-02	ci left: 5.612616e-01	ci right 5.699708e-01	k: 28281	n:50000
KS ci ratio: 1.052778e-01	ci left: 2.555784e-02	ci right 2.841743e-02	k: 1348	n:50000
CSN2   50000 perm   8 sec   (5992 perm/sec)   p_kst 2.696000e-02   p_cons 5.656200e-01   p_joint 9.324000e-02

Joint ci ratio: 4.108532e-02	ci left: 1.290202e-01	ci right 1.344488e-01	k: 7903	n:60000
Cons ci ratio: 1.404272e-02	ci left: 5.609884e-01	ci right 5.689386e-01	k: 33898	n:60000
KS ci ratio: 9.543478e-02	ci left: 2.604323e-02	ci right 2.866942e-02	k: 1640	n:60000
CSN2   60000 perm   10 sec   (5843 perm/sec)   p_kst 2.733333e-02   p_cons 5.649667e-01   p_joint 1.317167e-01

Outputting figure to mutsig2_images.part000000000044/CSN2.4_705_60000_0.027333_0.56497_0.13172.png
                gene_name: CSN2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 50 percent done.
CSRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
Cons ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
KS ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
CSRP2BP   10000 perm   2 sec   (6249 perm/sec)   p_kst 4.322000e-01   p_cons 2.695000e-01   p_joint 4.357000e-01

Outputting figure to mutsig2_images.part000000000044/CSRP2BP.4_2389_10000_0.4322_0.2695_0.4357.png
                gene_name: CSRP2BP
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 52 percent done.
CSTF2T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
Cons ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
KS ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
CSTF2T   10000 perm   2 sec   (6528 perm/sec)   p_kst 2.226000e-01   p_cons 3.144000e-01   p_joint 4.076000e-01

Outputting figure to mutsig2_images.part000000000044/CSTF2T.4_1855_10000_0.2226_0.3144_0.4076.png
                gene_name: CSTF2T
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 54 percent done.
CTDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
Cons ci ratio: 1.759195e-01	ci left: 4.312598e-02	ci right 5.154025e-02	k: 472	n:10000
KS ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
CTDP1   10000 perm   2 sec   (6306 perm/sec)   p_kst 4.840000e-02   p_cons 4.720000e-02   p_joint 7.280000e-02

Joint ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
Cons ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
KS ci ratio: 1.231716e-01	ci left: 4.522388e-02	ci right 5.120834e-02	k: 963	n:20000
CTDP1   20000 perm   4 sec   (5682 perm/sec)   p_kst 4.815000e-02   p_cons 4.970000e-02   p_joint 3.715000e-02

Joint ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
Cons ci ratio: 9.882319e-02	ci left: 4.736547e-02	ci right 5.232217e-02	k: 1494	n:30000
KS ci ratio: 1.004241e-01	ci left: 4.590106e-02	ci right 5.078689e-02	k: 1449	n:30000
CTDP1   30000 perm   6 sec   (5432 perm/sec)   p_kst 4.830000e-02   p_cons 4.980000e-02   p_joint 3.870000e-02

Joint ci ratio: 9.868338e-02	ci left: 3.607420e-02	ci right 3.984326e-02	k: 1517	n:40000
Cons ci ratio: 8.448177e-02	ci left: 4.891322e-02	ci right 5.325225e-02	k: 2042	n:40000
KS ci ratio: 8.700168e-02	ci left: 4.619480e-02	ci right 5.042109e-02	k: 1931	n:40000
CTDP1   40000 perm   8 sec   (5264 perm/sec)   p_kst 4.827500e-02   p_cons 5.105000e-02   p_joint 3.792500e-02

Outputting figure to mutsig2_images.part000000000044/CTDP1.4_2938_40000_0.048275_0.05105_0.037925.png
                gene_name: CTDP1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 56 percent done.
CSN1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
KS ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
CSN1S1   10000 perm   1 sec   (7370 perm/sec)   p_kst 4.815000e-01   p_cons 6.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSN1S1.3_618_10000_0.4815_0.6623_1.png
                gene_name: CSN1S1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
CSN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
Cons ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
KS ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
CSN3   10000 perm   1 sec   (7643 perm/sec)   p_kst 3.804000e-01   p_cons 6.530000e-01   p_joint 5.895000e-01

Outputting figure to mutsig2_images.part000000000044/CSN3.3_561_10000_0.3804_0.653_0.5895.png
                gene_name: CSN3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 60 percent done.
CSNK1G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.667321e-02	ci left: 6.742815e-01	ci right 6.926115e-01	k: 6835	n:10000
KS ci ratio: 1.244464e-02	ci left: 9.026794e-01	ci right 9.140814e-01	k: 9085	n:10000
CSNK1G3   10000 perm   1 sec   (6852 perm/sec)   p_kst 9.085000e-01   p_cons 6.835000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSNK1G3.3_1420_10000_0.9085_0.6835_1.png
                gene_name: CSNK1G3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CSPG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
Cons ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
CSPG5   10000 perm   1 sec   (6995 perm/sec)   p_kst 6.422000e-01   p_cons 4.490000e-02   p_joint 2.187000e-01

Joint ci ratio: 6.219628e-02	ci left: 1.605216e-01	ci right 1.708758e-01	k: 3313	n:20000
Cons ci ratio: 1.265168e-01	ci left: 4.289548e-02	ci right 4.873749e-02	k: 915	n:20000
KS ci ratio: 2.110484e-02	ci left: 6.262762e-01	ci right 6.396851e-01	k: 12660	n:20000
CSPG5   20000 perm   3 sec   (6235 perm/sec)   p_kst 6.330000e-01   p_cons 4.575000e-02   p_joint 1.656500e-01

Joint ci ratio: 5.305193e-02	ci left: 1.498666e-01	ci right 1.580672e-01	k: 4618	n:30000
Cons ci ratio: 1.027927e-01	ci left: 4.385197e-02	ci right 4.863640e-02	k: 1386	n:30000
KS ci ratio: 1.714956e-02	ci left: 6.297567e-01	ci right 6.406837e-01	k: 19057	n:30000
CSPG5   30000 perm   5 sec   (5869 perm/sec)   p_kst 6.352333e-01   p_cons 4.620000e-02   p_joint 1.539333e-01

Joint ci ratio: 5.022744e-02	ci left: 1.288208e-01	ci right 1.354827e-01	k: 5285	n:40000
Cons ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
KS ci ratio: 1.500090e-02	ci left: 6.258483e-01	ci right 6.353327e-01	k: 25224	n:40000
CSPG5   40000 perm   7 sec   (5695 perm/sec)   p_kst 6.306000e-01   p_cons 4.595000e-02   p_joint 1.321250e-01

Outputting figure to mutsig2_images.part000000000044/CSPG5.3_1640_40000_0.6306_0.04595_0.13212.png
                gene_name: CSPG5
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 63 percent done.
CST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
Cons ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
KS ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
CST5   10000 perm   1 sec   (7394 perm/sec)   p_kst 2.260000e-01   p_cons 3.931000e-01   p_joint 3.085000e-01

Outputting figure to mutsig2_images.part000000000044/CST5.3_441_10000_0.226_0.3931_0.3085.png
                gene_name: CST5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 65 percent done.
CST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
CST8   10000 perm   1 sec   (7474 perm/sec)   p_kst 7.384000e-01   p_cons 6.290000e-02   p_joint 2.800000e-01

Joint ci ratio: 5.215381e-02	ci left: 2.144731e-01	ci right 2.260084e-01	k: 4404	n:20000
Cons ci ratio: 1.062227e-01	ci left: 6.035399e-02	ci right 6.717352e-02	k: 1274	n:20000
KS ci ratio: 1.646838e-02	ci left: 7.329547e-01	ci right 7.451758e-01	k: 14782	n:20000
CST8   20000 perm   3 sec   (6598 perm/sec)   p_kst 7.391000e-01   p_cons 6.370000e-02   p_joint 2.202000e-01

Joint ci ratio: 4.363757e-02	ci left: 2.073202e-01	ci right 2.166023e-01	k: 6358	n:30000
Cons ci ratio: 8.696205e-02	ci left: 6.066825e-02	ci right 6.621666e-02	k: 1902	n:30000
KS ci ratio: 1.344062e-02	ci left: 7.342589e-01	ci right 7.442280e-01	k: 22178	n:30000
CST8   30000 perm   5 sec   (6271 perm/sec)   p_kst 7.392667e-01   p_cons 6.340000e-02   p_joint 2.119333e-01

Outputting figure to mutsig2_images.part000000000044/CST8.3_441_30000_0.73927_0.0634_0.21193.png
                gene_name: CST8
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 67 percent done.
CST9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
Cons ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
KS ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
CST9   10000 perm   1 sec   (8143 perm/sec)   p_kst 5.685000e-01   p_cons 8.935000e-01   p_joint 8.798000e-01

Outputting figure to mutsig2_images.part000000000044/CST9.3_488_10000_0.5685_0.8935_0.8798.png
                gene_name: CST9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 69 percent done.
CSTF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
CSTF3   10000 perm   2 sec   (6386 perm/sec)   p_kst 6.780000e-01   p_cons 1.131000e-01   p_joint 1

Joint ci ratio: 2.097785e-02	ci left: 6.290866e-01	ci right 6.424739e-01	k: 12716	n:20000
Cons ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
KS ci ratio: 1.933822e-02	ci left: 6.660467e-01	ci right 6.791031e-01	k: 13452	n:20000
CSTF3   20000 perm   3 sec   (5745 perm/sec)   p_kst 6.726000e-01   p_cons 1.069000e-01   p_joint 6.358000e-01

Outputting figure to mutsig2_images.part000000000044/CSTF3.3_2331_20000_0.6726_0.1069_0.6358.png
                gene_name: CSTF3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 71 percent done.
CTCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
Cons ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KS ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
CTCF   10000 perm   1 sec   (6679 perm/sec)   p_kst 3.447000e-01   p_cons 5.030000e-01   p_joint 4.265000e-01

Outputting figure to mutsig2_images.part000000000044/CTCF.3_2224_10000_0.3447_0.503_0.4265.png
                gene_name: CTCF
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 73 percent done.
CTNNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CTNNA1   10000 perm   2 sec   (6429 perm/sec)   p_kst 1   p_cons 5.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTNNA1.3_2789_10000_1_0.5149_1.png
                gene_name: CTNNA1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CTNNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
Cons ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
CTNNAL1   10000 perm   2 sec   (6447 perm/sec)   p_kst 4.501000e-01   p_cons 3.809000e-01   p_joint 9.398000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNAL1.3_2281_10000_0.4501_0.3809_0.9398.png
                gene_name: CTNNAL1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 77 percent done.
CTNNBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
Cons ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
KS ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
CTNNBL1   10000 perm   1 sec   (6813 perm/sec)   p_kst 1.404000e-01   p_cons 3.697000e-01   p_joint 1.644000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNBL1.3_1756_10000_0.1404_0.3697_0.1644.png
                gene_name: CTNNBL1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
CSNK1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
KS ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
CSNK1D   10000 perm   1 sec   (7191 perm/sec)   p_kst 1.304000e-01   p_cons 8.002000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.399582e-02	ci left: 7.912059e-01	ci right 8.024076e-01	k: 15937	n:20000
KS ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
CSNK1D   20000 perm   3 sec   (6425 perm/sec)   p_kst 1.339500e-01   p_cons 7.968500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSNK1D.2_1321_20000_0.13395_0.79685_1.png
                gene_name: CSNK1D
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CSRNP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
CSRNP2   10000 perm   1 sec   (7140 perm/sec)   p_kst 5.099000e-01   p_cons 3.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRNP2.2_1648_10000_0.5099_0.3706_1.png
                gene_name: CSRNP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
CST1   10000 perm   1 sec   (7875 perm/sec)   p_kst 3.070000e-02   p_cons 7.813000e-01   p_joint 6.650000e-02

Joint ci ratio: 1.029005e-01	ci left: 6.415862e-02	ci right 7.116771e-02	k: 1352	n:20000
Cons ci ratio: 1.469314e-02	ci left: 7.748495e-01	ci right 7.863688e-01	k: 15613	n:20000
KS ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
CST1   20000 perm   3 sec   (6947 perm/sec)   p_kst 3.210000e-02   p_cons 7.806500e-01   p_joint 6.760000e-02

Joint ci ratio: 9.046474e-02	ci left: 5.622935e-02	ci right 6.158981e-02	k: 1766	n:30000
Cons ci ratio: 1.197527e-02	ci left: 7.765450e-01	ci right 7.859338e-01	k: 23438	n:30000
KS ci ratio: 1.240085e-01	ci left: 3.023114e-02	ci right 3.426011e-02	k: 966	n:30000
CST1   30000 perm   5 sec   (6585 perm/sec)   p_kst 3.220000e-02   p_cons 7.812667e-01   p_joint 5.886667e-02

Joint ci ratio: 6.242827e-02	ci left: 8.691704e-02	ci right 9.254268e-02	k: 3588	n:40000
Cons ci ratio: 1.038200e-02	ci left: 7.768136e-01	ci right 7.849456e-01	k: 31236	n:40000
KS ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
CST1   40000 perm   6 sec   (6363 perm/sec)   p_kst 3.202500e-02   p_cons 7.809000e-01   p_joint 8.970000e-02

Joint ci ratio: 5.590784e-02	ci left: 8.701172e-02	ci right 9.203605e-02	k: 4475	n:50000
Cons ci ratio: 9.293535e-03	ci left: 7.769665e-01	ci right 7.842409e-01	k: 39031	n:50000
KS ci ratio: 9.685697e-02	ci left: 3.018157e-02	ci right 3.327311e-02	k: 1585	n:50000
CST1   50000 perm   8 sec   (6180 perm/sec)   p_kst 3.170000e-02   p_cons 7.806200e-01   p_joint 8.950000e-02

Outputting figure to mutsig2_images.part000000000044/CST1.2_438_50000_0.0317_0.78062_0.0895.png
                gene_name: CST1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 85 percent done.
CST11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
CST11   10000 perm   1 sec   (7715 perm/sec)   p_kst 3.968000e-01   p_cons 8.500000e-02   p_joint 1.548000e-01

Joint ci ratio: 7.924803e-02	ci left: 1.046639e-01	ci right 1.133501e-01	k: 2179	n:20000
Cons ci ratio: 9.019006e-02	ci left: 8.239466e-02	ci right 9.022610e-02	k: 1725	n:20000
KS ci ratio: 3.373373e-02	ci left: 3.961916e-01	ci right 4.098366e-01	k: 8060	n:20000
CST11   20000 perm   3 sec   (6754 perm/sec)   p_kst 4.030000e-01   p_cons 8.625000e-02   p_joint 1.089500e-01

Outputting figure to mutsig2_images.part000000000044/CST11.2_429_20000_0.403_0.08625_0.10895.png
                gene_name: CST11
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 87 percent done.
CST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
KS ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
CST4   10000 perm   1 sec   (8043 perm/sec)   p_kst 7.705000e-01   p_cons 9.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CST4.2_438_10000_0.7705_0.9479_1.png
                gene_name: CST4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CST9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
Cons ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
KS ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
CST9L   10000 perm   1 sec   (8236 perm/sec)   p_kst 3.370000e-01   p_cons 2.836000e-01   p_joint 4.378000e-01

Outputting figure to mutsig2_images.part000000000044/CST9L.2_456_10000_0.337_0.2836_0.4378.png
                gene_name: CST9L
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
CSTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
Cons ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
KS ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
CSTB   10000 perm   1 sec   (7978 perm/sec)   p_kst 1.663000e-01   p_cons 7.359000e-01   p_joint 8.482000e-01

Outputting figure to mutsig2_images.part000000000044/CSTB.2_309_10000_0.1663_0.7359_0.8482.png
                gene_name: CSTB
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 92 percent done.
CT45A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
Cons ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
KS ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
CT45A5   10000 perm   1 sec   (7851 perm/sec)   p_kst 1.854000e-01   p_cons 4.029000e-01   p_joint 4.076000e-01

Outputting figure to mutsig2_images.part000000000044/CT45A5.2_586_10000_0.1854_0.4029_0.4076.png
                gene_name: CT45A5
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
CTAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
Cons ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
KS ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
CTAG2   10000 perm   1 sec   (7734 perm/sec)   p_kst 3.050000e-02   p_cons 9.852000e-01   p_joint 3.592000e-01

Joint ci ratio: 6.236552e-02	ci left: 1.597810e-01	ci right 1.701166e-01	k: 3298	n:20000
Cons ci ratio: 3.448962e-03	ci left: 9.830071e-01	ci right 9.864499e-01	k: 19696	n:20000
KS ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
CTAG2   20000 perm   3 sec   (6803 perm/sec)   p_kst 3.090000e-02   p_cons 9.848000e-01   p_joint 1.649000e-01

Joint ci ratio: 3.984080e-02	ci left: 2.390820e-01	ci right 2.488343e-01	k: 7318	n:30000
Cons ci ratio: 2.814620e-03	ci left: 9.833509e-01	ci right 9.861540e-01	k: 29544	n:30000
KS ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
CTAG2   30000 perm   5 sec   (6457 perm/sec)   p_kst 3.000000e-02   p_cons 9.848000e-01   p_joint 2.439333e-01

Joint ci ratio: 3.089291e-02	ci left: 2.825451e-01	ci right 2.914358e-01	k: 11479	n:40000
Cons ci ratio: 2.408306e-03	ci left: 9.839163e-01	ci right 9.863125e-01	k: 39406	n:40000
KS ci ratio: 1.133121e-01	ci left: 2.740160e-02	ci right 3.071724e-02	k: 1161	n:40000
CTAG2   40000 perm   6 sec   (6192 perm/sec)   p_kst 2.902500e-02   p_cons 9.851500e-01   p_joint 2.869750e-01

Joint ci ratio: 2.455504e-02	ci left: 3.334545e-01	ci right 3.417643e-01	k: 16880	n:50000
Cons ci ratio: 2.174933e-03	ci left: 9.837511e-01	ci right 9.859121e-01	k: 49243	n:50000
KS ci ratio: 1.000621e-01	ci left: 2.828792e-02	ci right 3.128700e-02	k: 1488	n:50000
CTAG2   50000 perm   8 sec   (6013 perm/sec)   p_kst 2.976000e-02   p_cons 9.848600e-01   p_joint 3.376000e-01

Joint ci ratio: 2.352573e-02	ci left: 3.126129e-01	ci right 3.200715e-01	k: 18980	n:60000
Cons ci ratio: 1.994739e-03	ci left: 9.837029e-01	ci right 9.856831e-01	k: 59083	n:60000
KS ci ratio: 9.079031e-02	ci left: 2.876357e-02	ci right 3.151546e-02	k: 1807	n:60000
CTAG2   60000 perm   10 sec   (5868 perm/sec)   p_kst 3.011667e-02   p_cons 9.847167e-01   p_joint 3.163333e-01

Outputting figure to mutsig2_images.part000000000044/CTAG2.2_780_60000_0.030117_0.98472_0.31633.png
                gene_name: CTAG2
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 96 percent done.
CTGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
CTGF   10000 perm   1 sec   (7495 perm/sec)   p_kst 2.189000e-01   p_cons 2.821000e-01   p_joint 2.291000e-01

Outputting figure to mutsig2_images.part000000000044/CTGF.2_1070_10000_0.2189_0.2821_0.2291.png
                gene_name: CTGF
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
CTR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
Cons ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
KS ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
CTR9   10000 perm   2 sec   (6237 perm/sec)   p_kst 4.990000e-02   p_cons 3.543000e-01   p_joint 6.700000e-02

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 3.725684e-02	ci left: 3.496093e-01	ci right 3.629325e-01	k: 7125	n:20000
KS ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
CTR9   20000 perm   4 sec   (5613 perm/sec)   p_kst 5.120000e-02   p_cons 3.562500e-01   p_joint 6.980000e-02

Joint ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
Cons ci ratio: 3.021775e-02	ci left: 3.539011e-01	ci right 3.647928e-01	k: 10780	n:30000
KS ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
CTR9   30000 perm   6 sec   (5377 perm/sec)   p_kst 5.096667e-02   p_cons 3.593333e-01   p_joint 7.063333e-02

Outputting figure to mutsig2_images.part000000000044/CTR9.2_3622_30000_0.050967_0.35933_0.070633.png
                gene_name: CTR9
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000044
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 44 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 4421856: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000045> was used as the working directory.
Started at Wed Oct 24 17:37:16 2012
Results reported at Wed Oct 24 17:50:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000045.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000045.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 45  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000045.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    856.88 sec.
    Max Memory :      5324 MB
    Max Swap   :      7633 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
45
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 45
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 45: processing genes 3982 - 4071
Calculating significance of each gene.
Using projection method.
3982	CTRL	1
3983	CTSA	9.097322e-01
3984	CTSB	8.746047e-01
3985	CTSC	9.290336e-01
3986	CTSD	7.461813e-01
3987	CTSE	4.835341e-01
3988	CTSF	4.502133e-01
3989	CTSG	1
3990	CTSH	1
3991	CTSK	8.404628e-01
3992	CTSL1	1
3993	CTSL2	1.525988e-01
3994	CTSO	1
3995	CTSS	8.685442e-01
3996	CTSW	1
3997	CTSZ	3.038879e-01
3998	CTTN	9.652151e-01
3999	CTTNBP2	9.962887e-01
4000/18094 4000	CTTNBP2NL	5.396677e-01
4001	CTU2	9.318995e-01
4002	CTXN1	1
4003	CTXN3	2.746529e-01
4004	CUBN	1
4005	CUEDC1	6.368784e-01
4006	CUEDC2	1
4007	CUL1	2.176249e-01
4008	CUL2	2.605263e-01
4009	CUL3	2.162756e-01
4010	CUL4A	6.965446e-01
4011	CUL4B	9.355153e-01
4012	CUL5	6.217542e-01
4013	CUL7	8.296490e-01
4014	CUL9	9.994298e-01
4015	CUTA	1
4016	CUTC	4.834116e-01
4017	CUX1	9.969340e-01
4018	CUX2	9.900804e-01
4019	CUZD1	6.779786e-01
4020	CWC15	6.318334e-02
4021	CWC22	9.596573e-01
4022	CWC25	3.019650e-01
4023	CWC27	1.382871e-01
4024	CWF19L1	9.698532e-01
4025	CWF19L2	1.339637e-01
4026	CWH43	6.506375e-01
4027	CX3CL1	4.902496e-01
4028	CX3CR1	5.709899e-01
4029	CXADR	1
4030	CXCL1	1.095944e-01
4031	CXCL10	1
4032	CXCL11	1
4033	CXCL12	4.085815e-01
4034	CXCL13	1
4035	CXCL14	1
4036	CXCL16	6.754607e-01
4037	CXCL17	1
4038	CXCL2	1
4039	CXCL3	1
4040	CXCL5	4.643674e-01
4041	CXCL6	1.420989e-01
4042	CXCL9	3.413879e-02
4043	CXCR1	5.389558e-01
4044	CXCR2	4.386350e-02
4045	CXCR3	6.573502e-01
4046	CXCR4	5.609132e-01
4047	CXCR5	7.270032e-01
4048	CXCR6	8.124706e-01
4049	CXCR7	1.125673e-03
4050	CXXC1	7.124885e-01
4051	CXXC4	5.888824e-02
4052	CXXC5	2.813847e-01
4053	CXorf1	1
4054	CXorf21	1.408156e-02
4055	CXorf22	1.327646e-01
4056	CXorf23	9.786000e-01
4057	CXorf26	5.703845e-01
4058	CXorf27	1.233150e-01
4059	CXorf36	2.572369e-01
4060	CXorf38	1
4061	CXorf40A	1.727956e-01
4062	CXorf40B	6.327314e-02
4063	CXorf41	1
4064	CXorf48	4.456363e-01
4065	CXorf56	5.788217e-01
4066	CXorf57	9.960529e-01
4067	CXorf58	3.357588e-01
4068	CXorf59	1.513826e-05
4069	CXorf61	1
4070	CXorf65	1
4071	CXorf66	1.383053e-02
Done

Running MutSig 2:
Scatter job 45: processing genes 3982 - 4071
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CUBN
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
Cons ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
CUBN   10000 perm   4 sec   (2658 perm/sec)   p_kst 9.123000e-01   p_cons 6.298000e-01   p_joint 9.774000e-01

Outputting figure to mutsig2_images.part000000000045/CUBN.39_11140_10000_0.9123_0.6298_0.9774.png
                gene_name: CUBN
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 2 percent done.
CTTNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
CTTNBP2   10000 perm   3 sec   (3987 perm/sec)   p_kst 2.600000e-02   p_cons 8.169000e-01   p_joint 9.450000e-02

Joint ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
Cons ci ratio: 1.305091e-02	ci left: 8.131377e-01	ci right 8.238696e-01	k: 16371	n:20000
KS ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
CTTNBP2   20000 perm   5 sec   (3645 perm/sec)   p_kst 2.420000e-02   p_cons 8.185500e-01   p_joint 5.120000e-02

Joint ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
Cons ci ratio: 1.066488e-02	ci left: 8.138892e-01	ci right 8.226491e-01	k: 24549	n:30000
KS ci ratio: 1.431066e-01	ci left: 2.265144e-02	ci right 2.617482e-02	k: 731	n:30000
CTTNBP2   30000 perm   9 sec   (3511 perm/sec)   p_kst 2.436667e-02   p_cons 8.183000e-01   p_joint 4.350000e-02

Joint ci ratio: 8.262309e-02	ci left: 5.106962e-02	ci right 5.549551e-02	k: 2130	n:40000
Cons ci ratio: 9.247650e-03	ci left: 8.141077e-01	ci right 8.216961e-01	k: 32717	n:40000
KS ci ratio: 1.224005e-01	ci left: 2.346781e-02	ci right 2.655168e-02	k: 999	n:40000
CTTNBP2   40000 perm   12 sec   (3413 perm/sec)   p_kst 2.497500e-02   p_cons 8.179250e-01   p_joint 5.325000e-02

Joint ci ratio: 6.778020e-02	ci left: 6.057086e-02	ci right 6.484008e-02	k: 3134	n:50000
Cons ci ratio: 8.408888e-03	ci left: 8.095139e-01	ci right 8.163697e-01	k: 40648	n:50000
KS ci ratio: 1.054386e-01	ci left: 2.547990e-02	ci right 2.833539e-02	k: 1344	n:50000
CTTNBP2   50000 perm   15 sec   (3337 perm/sec)   p_kst 2.688000e-02   p_cons 8.129600e-01   p_joint 6.268000e-02

Joint ci ratio: 6.204198e-02	ci left: 6.044460e-02	ci right 6.433119e-02	k: 3742	n:60000
Cons ci ratio: 7.689926e-03	ci left: 8.092696e-01	ci right 8.155335e-01	k: 48745	n:60000
KS ci ratio: 9.594695e-02	ci left: 2.576650e-02	ci right 2.837951e-02	k: 1623	n:60000
CTTNBP2   60000 perm   18 sec   (3275 perm/sec)   p_kst 2.705000e-02   p_cons 8.124167e-01   p_joint 6.236667e-02

Outputting figure to mutsig2_images.part000000000045/CTTNBP2.18_5084_60000_0.02705_0.81242_0.062367.png
                gene_name: CTTNBP2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 4 percent done.
CUL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
Cons ci ratio: 2.265589e-02	ci left: 7.409867e-01	ci right 7.580678e-01	k: 7496	n:10000
KS ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
CUL9   10000 perm   3 sec   (3777 perm/sec)   p_kst 3.774000e-01   p_cons 7.496000e-01   p_joint 5.302000e-01

Outputting figure to mutsig2_images.part000000000045/CUL9.15_7714_10000_0.3774_0.7496_0.5302.png
                gene_name: CUL9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 5 percent done.
CXorf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
CXorf59   10000 perm   2 sec   (4390 perm/sec)   p_kst 1.620000e-01   p_cons 6.176000e-01   p_joint 2.371000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf59.13_1549_10000_0.162_0.6176_0.2371.png
                gene_name: CXorf59
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
CXorf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
Cons ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
KS ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
CXorf22   10000 perm   2 sec   (5140 perm/sec)   p_kst 5.790000e-01   p_cons 5.390000e-02   p_joint 1.653000e-01

Joint ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
Cons ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
KS ci ratio: 2.407608e-02	ci left: 5.630539e-01	ci right 5.768258e-01	k: 11399	n:20000
CXorf22   20000 perm   4 sec   (4640 perm/sec)   p_kst 5.699500e-01   p_cons 5.595000e-02   p_joint 1.270000e-01

Joint ci ratio: 4.739230e-02	ci left: 1.812806e-01	ci right 1.901137e-01	k: 5570	n:30000
Cons ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
KS ci ratio: 2.054795e-02	ci left: 5.424806e-01	ci right 5.537768e-01	k: 16444	n:30000
CXorf22   30000 perm   7 sec   (4417 perm/sec)   p_kst 5.481333e-01   p_cons 5.580000e-02   p_joint 1.856667e-01

Outputting figure to mutsig2_images.part000000000045/CXorf22.11_2995_30000_0.54813_0.0558_0.18567.png
                gene_name: CXorf22
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
CUL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
Cons ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
KS ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
CUL7   10000 perm   2 sec   (4317 perm/sec)   p_kst 4.679000e-01   p_cons 3.159000e-01   p_joint 6.415000e-01

Outputting figure to mutsig2_images.part000000000045/CUL7.9_5453_10000_0.4679_0.3159_0.6415.png
                gene_name: CUL7
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 11 percent done.
CWF19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
Cons ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
CWF19L2   10000 perm   2 sec   (4991 perm/sec)   p_kst 1.070000e-02   p_cons 8.327000e-01   p_joint 4.360000e-02

Joint ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
Cons ci ratio: 1.228199e-02	ci left: 8.306933e-01	ci right 8.410088e-01	k: 16718	n:20000
KS ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
CWF19L2   20000 perm   4 sec   (4449 perm/sec)   p_kst 1.150000e-02   p_cons 8.359000e-01   p_joint 4.985000e-02

Joint ci ratio: 1.223194e-01	ci left: 3.107192e-02	ci right 3.515248e-02	k: 992	n:30000
Cons ci ratio: 1.054277e-02	ci left: 8.173209e-01	ci right 8.260167e-01	k: 24651	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
CWF19L2   30000 perm   7 sec   (4294 perm/sec)   p_kst 1.223333e-02   p_cons 8.217000e-01   p_joint 3.306667e-02

Joint ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
Cons ci ratio: 9.100638e-03	ci left: 8.188709e-01	ci right 8.263822e-01	k: 32906	n:40000
KS ci ratio: 1.763621e-01	ci left: 1.112331e-02	ci right 1.329836e-02	k: 487	n:40000
CWF19L2   40000 perm   10 sec   (4139 perm/sec)   p_kst 1.217500e-02   p_cons 8.226500e-01   p_joint 4.007500e-02

Joint ci ratio: 9.260035e-02	ci left: 3.299554e-02	ci right 3.621878e-02	k: 1729	n:50000
Cons ci ratio: 8.160741e-03	ci left: 8.185178e-01	ci right 8.252448e-01	k: 41095	n:50000
KS ci ratio: 1.568350e-01	ci left: 1.137150e-02	ci right 1.332572e-02	k: 616	n:50000
CWF19L2   50000 perm   12 sec   (4048 perm/sec)   p_kst 1.232000e-02   p_cons 8.219000e-01   p_joint 3.458000e-02

Joint ci ratio: 8.145277e-02	ci left: 3.565077e-02	ci right 3.869421e-02	k: 2229	n:60000
Cons ci ratio: 7.431869e-03	ci left: 8.195195e-01	ci right 8.256493e-01	k: 49356	n:60000
KS ci ratio: 1.411947e-01	ci left: 1.178714e-02	ci right 1.359378e-02	k: 760	n:60000
CWF19L2   60000 perm   15 sec   (3977 perm/sec)   p_kst 1.266667e-02   p_cons 8.226000e-01   p_joint 3.715000e-02

Joint ci ratio: 7.740515e-02	ci left: 3.397314e-02	ci right 3.672269e-02	k: 2473	n:70000
Cons ci ratio: 6.882246e-03	ci left: 8.196777e-01	ci right 8.253526e-01	k: 57577	n:70000
KS ci ratio: 1.307086e-01	ci left: 1.185594e-02	ci right 1.352768e-02	k: 887	n:70000
CWF19L2   70000 perm   18 sec   (3909 perm/sec)   p_kst 1.267143e-02   p_cons 8.225286e-01   p_joint 3.532857e-02

Joint ci ratio: 7.432713e-02	ci left: 3.234973e-02	ci right 3.485924e-02	k: 2687	n:80000
Cons ci ratio: 6.449946e-03	ci left: 8.193063e-01	ci right 8.246203e-01	k: 65758	n:80000
KS ci ratio: 1.224415e-01	ci left: 1.187491e-02	ci right 1.343573e-02	k: 1011	n:80000
CWF19L2   80000 perm   21 sec   (3839 perm/sec)   p_kst 1.263750e-02   p_cons 8.219750e-01   p_joint 3.358750e-02

Joint ci ratio: 7.285207e-02	ci left: 3.003006e-02	ci right 3.231140e-02	k: 2804	n:90000
Cons ci ratio: 5.965944e-03	ci left: 8.250156e-01	ci right 8.299633e-01	k: 74475	n:90000
KS ci ratio: 1.144504e-01	ci left: 1.212976e-02	ci right 1.361300e-02	k: 1157	n:90000
CWF19L2   90000 perm   24 sec   (3771 perm/sec)   p_kst 1.285556e-02   p_cons 8.275000e-01   p_joint 3.115556e-02

Joint ci ratio: 7.046283e-02	ci left: 2.896119e-02	ci right 3.108619e-02	k: 3001	n:100000
Cons ci ratio: 5.658597e-03	ci left: 8.252042e-01	ci right 8.298968e-01	k: 82756	n:100000
KS ci ratio: 1.080960e-01	ci left: 1.227789e-02	ci right 1.369057e-02	k: 1297	n:100000
CWF19L2   100000 perm   27 sec   (3711 perm/sec)   p_kst 1.297000e-02   p_cons 8.275600e-01   p_joint 3.001000e-02

Joint ci ratio: 6.439390e-02	ci left: 3.154044e-02	ci right 3.364794e-02	k: 3584	n:110000
Cons ci ratio: 5.182444e-03	ci left: 8.365587e-01	ci right 8.409144e-01	k: 92262	n:110000
KS ci ratio: 1.029852e-01	ci left: 1.233006e-02	ci right 1.367761e-02	k: 1429	n:110000
CWF19L2   110000 perm   30 sec   (3651 perm/sec)   p_kst 1.299091e-02   p_cons 8.387455e-01   p_joint 3.258182e-02

Joint ci ratio: 5.792051e-02	ci left: 3.570073e-02	ci right 3.783840e-02	k: 4411	n:120000
Cons ci ratio: 4.961725e-03	ci left: 8.366569e-01	ci right 8.408267e-01	k: 100650	n:120000
KS ci ratio: 9.790374e-02	ci left: 1.253748e-02	ci right 1.383620e-02	k: 1581	n:120000
CWF19L2   120000 perm   33 sec   (3600 perm/sec)   p_kst 1.317500e-02   p_cons 8.387500e-01   p_joint 3.675833e-02

Outputting figure to mutsig2_images.part000000000045/CWF19L2.9_2757_120000_0.013175_0.83875_0.036758.png
                gene_name: CWF19L2
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 12 percent done.
CUX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
CUX1   10000 perm   2 sec   (4470 perm/sec)   p_kst 1.358000e-01   p_cons 4.055000e-01   p_joint 2.817000e-01

Outputting figure to mutsig2_images.part000000000045/CUX1.8_5499_10000_0.1358_0.4055_0.2817.png
                gene_name: CUX1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 14 percent done.
CWH43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
CWH43   10000 perm   2 sec   (5227 perm/sec)   p_kst 9.930000e-02   p_cons 6.169000e-01   p_joint 1.588000e-01

Joint ci ratio: 5.648884e-02	ci left: 1.885395e-01	ci right 1.995496e-01	k: 3880	n:20000
Cons ci ratio: 2.235611e-02	ci left: 5.990376e-01	ci right 6.126317e-01	k: 12117	n:20000
KS ci ratio: 8.215368e-02	ci left: 9.798590e-02	ci right 1.064301e-01	k: 2043	n:20000
CWH43   20000 perm   4 sec   (4727 perm/sec)   p_kst 1.021500e-01   p_cons 6.058500e-01   p_joint 1.940000e-01

Outputting figure to mutsig2_images.part000000000045/CWH43.8_2164_20000_0.10215_0.60585_0.194.png
                gene_name: CWH43
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 16 percent done.
CXCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
CXCR7   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.824000e-01   p_cons 3.496000e-01   p_joint 6.752000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR7.8_1093_10000_0.6824_0.3496_0.6752.png
                gene_name: CXCR7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 18 percent done.
CUL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
CUL3   10000 perm   2 sec   (5020 perm/sec)   p_kst 1.448000e-01   p_cons 1.100000e-02   p_joint 3.520000e-02

Joint ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
Cons ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
KS ci ratio: 6.855648e-02	ci left: 1.356621e-01	ci right 1.453426e-01	k: 2809	n:20000
CUL3   20000 perm   4 sec   (4537 perm/sec)   p_kst 1.404500e-01   p_cons 7.800000e-03   p_joint 1.080000e-02

Joint ci ratio: 1.505461e-01	ci left: 2.043410e-02	ci right 2.379267e-02	k: 662	n:30000
Cons ci ratio: 2.514890e-01	ci left: 7.023142e-03	ci right 9.073849e-03	k: 240	n:30000
KS ci ratio: 5.651578e-02	ci left: 1.342804e-01	ci right 1.421232e-01	k: 4145	n:30000
CUL3   30000 perm   7 sec   (4361 perm/sec)   p_kst 1.381667e-01   p_cons 8.000000e-03   p_joint 2.206667e-02

Joint ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
Cons ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
KS ci ratio: 4.866370e-02	ci left: 1.361679e-01	ci right 1.429845e-01	k: 5582	n:40000
CUL3   40000 perm   9 sec   (4225 perm/sec)   p_kst 1.395500e-01   p_cons 8.250000e-03   p_joint 2.150000e-02

Joint ci ratio: 1.054386e-01	ci left: 2.547990e-02	ci right 2.833539e-02	k: 1344	n:50000
Cons ci ratio: 1.959546e-01	ci left: 7.161715e-03	ci right 8.736219e-03	k: 396	n:50000
KS ci ratio: 4.360885e-02	ci left: 1.360778e-01	ci right 1.421642e-01	k: 6955	n:50000
CUL3   50000 perm   12 sec   (4122 perm/sec)   p_kst 1.391000e-01   p_cons 7.920000e-03   p_joint 2.688000e-02

Joint ci ratio: 1.034227e-01	ci left: 2.217268e-02	ci right 2.460706e-02	k: 1402	n:60000
Cons ci ratio: 1.791471e-01	ci left: 7.207175e-03	ci right 8.641037e-03	k: 474	n:60000
KS ci ratio: 3.972696e-02	ci left: 1.368360e-01	ci right 1.423989e-01	k: 8376	n:60000
CUL3   60000 perm   15 sec   (4027 perm/sec)   p_kst 1.396000e-01   p_cons 7.900000e-03   p_joint 2.336667e-02

Joint ci ratio: 1.081307e-01	ci left: 1.743119e-02	ci right 1.943759e-02	k: 1289	n:70000
Cons ci ratio: 1.677241e-01	ci left: 7.093169e-03	ci right 8.405272e-03	k: 541	n:70000
KS ci ratio: 3.679573e-02	ci left: 1.369412e-01	ci right 1.420887e-01	k: 9765	n:70000
CUL3   70000 perm   18 sec   (3950 perm/sec)   p_kst 1.395000e-01   p_cons 7.728571e-03   p_joint 1.841429e-02

Joint ci ratio: 1.072066e-01	ci left: 1.555556e-02	ci right 1.732976e-02	k: 1314	n:80000
Cons ci ratio: 1.595651e-01	ci left: 6.889796e-03	ci right 8.096333e-03	k: 598	n:80000
KS ci ratio: 3.443567e-02	ci left: 1.369943e-01	ci right 1.418069e-01	k: 11151	n:80000
CUL3   80000 perm   21 sec   (3896 perm/sec)   p_kst 1.393875e-01   p_cons 7.475000e-03   p_joint 1.642500e-02

Joint ci ratio: 9.377844e-02	ci left: 1.815059e-02	ci right 1.994726e-02	k: 1713	n:90000
Cons ci ratio: 1.496445e-01	ci left: 7.000182e-03	ci right 8.143012e-03	k: 680	n:90000
KS ci ratio: 3.247831e-02	ci left: 1.370439e-01	ci right 1.415794e-01	k: 12537	n:90000
CUL3   90000 perm   23 sec   (3846 perm/sec)   p_kst 1.393000e-01   p_cons 7.555556e-03   p_joint 1.903333e-02

Joint ci ratio: 8.921580e-02	ci left: 1.809433e-02	ci right 1.979373e-02	k: 1893	n:100000
Cons ci ratio: 1.427916e-01	ci left: 6.945646e-03	ci right 8.023217e-03	k: 747	n:100000
KS ci ratio: 3.083236e-02	ci left: 1.370004e-01	ci right 1.413005e-01	k: 13914	n:100000
CUL3   100000 perm   26 sec   (3802 perm/sec)   p_kst 1.391400e-01   p_cons 7.470000e-03   p_joint 1.893000e-02

Joint ci ratio: 8.980200e-02	ci left: 1.626206e-02	ci right 1.779992e-02	k: 1872	n:110000
Cons ci ratio: 1.362968e-01	ci left: 6.954700e-03	ci right 7.980617e-03	k: 820	n:110000
KS ci ratio: 2.943046e-02	ci left: 1.368341e-01	ci right 1.409304e-01	k: 15276	n:110000
CUL3   110000 perm   29 sec   (3755 perm/sec)   p_kst 1.388727e-01   p_cons 7.454545e-03   p_joint 1.701818e-02

Joint ci ratio: 8.820702e-02	ci left: 1.547696e-02	ci right 1.691323e-02	k: 1942	n:120000
Cons ci ratio: 1.299572e-01	ci left: 7.035743e-03	ci right 8.021614e-03	k: 902	n:120000
KS ci ratio: 2.822950e-02	ci left: 1.364839e-01	ci right 1.404002e-01	k: 16612	n:120000
CUL3   120000 perm   32 sec   (3708 perm/sec)   p_kst 1.384333e-01   p_cons 7.516667e-03   p_joint 1.618333e-02

Joint ci ratio: 8.113684e-02	ci left: 1.692230e-02	ci right 1.836087e-02	k: 2292	n:130000
Cons ci ratio: 1.252627e-01	ci left: 7.008354e-03	ci right 7.952277e-03	k: 971	n:130000
KS ci ratio: 2.709881e-02	ci left: 1.367642e-01	ci right 1.405289e-01	k: 18023	n:130000
CUL3   130000 perm   36 sec   (3655 perm/sec)   p_kst 1.386385e-01   p_cons 7.469231e-03   p_joint 1.763077e-02

Joint ci ratio: 7.904322e-02	ci left: 1.658142e-02	ci right 1.795296e-02	k: 2416	n:140000
Cons ci ratio: 1.215140e-01	ci left: 6.930006e-03	ci right 7.833434e-03	k: 1032	n:140000
KS ci ratio: 2.608223e-02	ci left: 1.371136e-01	ci right 1.407442e-01	k: 19449	n:140000
CUL3   140000 perm   39 sec   (3602 perm/sec)   p_kst 1.389214e-01   p_cons 7.371429e-03   p_joint 1.725714e-02

Joint ci ratio: 7.678108e-02	ci left: 1.642377e-02	ci right 1.774166e-02	k: 2561	n:150000
Cons ci ratio: 1.166939e-01	ci left: 7.030751e-03	ci right 7.908449e-03	k: 1119	n:150000
KS ci ratio: 2.519874e-02	ci left: 1.371667e-01	ci right 1.406739e-01	k: 20837	n:150000
CUL3   150000 perm   42 sec   (3547 perm/sec)   p_kst 1.389133e-01   p_cons 7.460000e-03   p_joint 1.707333e-02

Joint ci ratio: 8.068633e-02	ci left: 1.395058e-02	ci right 1.512961e-02	k: 2325	n:160000
Cons ci ratio: 1.135967e-01	ci left: 6.967655e-03	ci right 7.812842e-03	k: 1181	n:160000
KS ci ratio: 2.444534e-02	ci left: 1.367674e-01	ci right 1.401582e-01	k: 22153	n:160000
CUL3   160000 perm   46 sec   (3497 perm/sec)   p_kst 1.384563e-01   p_cons 7.381250e-03   p_joint 1.453125e-02

Joint ci ratio: 7.241052e-02	ci left: 1.633302e-02	ci right 1.756588e-02	k: 2880	n:170000
Cons ci ratio: 1.099353e-01	ci left: 7.015237e-03	ci right 7.836990e-03	k: 1261	n:170000
KS ci ratio: 2.370415e-02	ci left: 1.369315e-01	ci right 1.402221e-01	k: 23557	n:170000
CUL3   170000 perm   49 sec   (3456 perm/sec)   p_kst 1.385706e-01   p_cons 7.417647e-03   p_joint 1.694118e-02

Joint ci ratio: 7.516962e-02	ci left: 1.432355e-02	ci right 1.544771e-02	k: 2678	n:180000
Cons ci ratio: 1.058933e-01	ci left: 7.155280e-03	ci right 7.960702e-03	k: 1359	n:180000
KS ci ratio: 2.326678e-02	ci left: 1.346296e-01	ci right 1.378044e-01	k: 24518	n:180000
CUL3   180000 perm   53 sec   (3415 perm/sec)   p_kst 1.362111e-01   p_cons 7.550000e-03   p_joint 1.487778e-02

Joint ci ratio: 6.740442e-02	ci left: 1.689961e-02	ci right 1.808360e-02	k: 3322	n:190000
Cons ci ratio: 1.027290e-01	ci left: 7.214395e-03	ci right 8.000740e-03	k: 1444	n:190000
KS ci ratio: 2.262759e-02	ci left: 1.348649e-01	ci right 1.379567e-01	k: 25917	n:190000
CUL3   190000 perm   56 sec   (3376 perm/sec)   p_kst 1.364053e-01   p_cons 7.600000e-03   p_joint 1.748421e-02

Joint ci ratio: 6.398646e-02	ci left: 1.783026e-02	ci right 1.901376e-02	k: 3683	n:200000
Cons ci ratio: 1.003292e-01	ci left: 7.194784e-03	ci right 7.959592e-03	k: 1514	n:200000
KS ci ratio: 2.207297e-02	ci left: 1.347095e-01	ci right 1.377211e-01	k: 27242	n:200000
CUL3   200000 perm   60 sec   (3337 perm/sec)   p_kst 1.362100e-01   p_cons 7.570000e-03   p_joint 1.841500e-02

Joint ci ratio: 6.185403e-02	ci left: 1.818586e-02	ci right 1.935129e-02	k: 3940	n:210000
Cons ci ratio: 9.815253e-02	ci left: 7.167943e-03	ci right 7.912414e-03	k: 1582	n:210000
KS ci ratio: 2.156902e-02	ci left: 1.344417e-01	ci right 1.373778e-01	k: 28540	n:210000
CUL3   210000 perm   64 sec   (3300 perm/sec)   p_kst 1.359048e-01   p_cons 7.533333e-03   p_joint 1.876190e-02

Outputting figure to mutsig2_images.part000000000045/CUL3.7_2371_210000_0.1359_0.0075333_0.018762.png
                gene_name: CUL3
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0072 
     ci_cons_bounds_right: 0.0079 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 20 percent done.
CUX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
Cons ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
CUX2   10000 perm   2 sec   (4406 perm/sec)   p_kst 4.142000e-01   p_cons 6.415000e-01   p_joint 6.979000e-01

Outputting figure to mutsig2_images.part000000000045/CUX2.7_4549_10000_0.4142_0.6415_0.6979.png
                gene_name: CUX2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 21 percent done.
CUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
Cons ci ratio: 3.545313e-02	ci left: 5.401859e-01	ci right 5.597849e-01	k: 5500	n:10000
KS ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
CUL1   10000 perm   2 sec   (5731 perm/sec)   p_kst 1.831000e-01   p_cons 5.500000e-01   p_joint 2.283000e-01

Outputting figure to mutsig2_images.part000000000045/CUL1.6_2415_10000_0.1831_0.55_0.2283.png
                gene_name: CUL1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 23 percent done.
CUL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
KS ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
CUL2   10000 perm   2 sec   (5242 perm/sec)   p_kst 7.480000e-02   p_cons 1.999000e-01   p_joint 7.570000e-02

Joint ci ratio: 9.277284e-02	ci left: 7.813566e-02	ci right 8.578640e-02	k: 1638	n:20000
Cons ci ratio: 5.574148e-02	ci left: 1.926944e-01	ci right 2.037935e-01	k: 3964	n:20000
KS ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
CUL2   20000 perm   4 sec   (4752 perm/sec)   p_kst 7.835000e-02   p_cons 1.982000e-01   p_joint 8.190000e-02

Outputting figure to mutsig2_images.part000000000045/CUL2.6_2318_20000_0.07835_0.1982_0.0819.png
                gene_name: CUL2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.086 

Current progress: 25 percent done.
CXorf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 1.336598e-02	ci left: 8.897487e-01	ci right 9.018196e-01	k: 8959	n:10000
KS ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
CXorf66   10000 perm   2 sec   (5630 perm/sec)   p_kst 8.550000e-02   p_cons 8.959000e-01   p_joint 1.664000e-01

Joint ci ratio: 5.440967e-02	ci left: 2.004130e-01	ci right 2.116726e-01	k: 4120	n:20000
Cons ci ratio: 9.563425e-03	ci left: 8.892951e-01	ci right 8.978901e-01	k: 17873	n:20000
KS ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
CXorf66   20000 perm   4 sec   (5076 perm/sec)   p_kst 9.160000e-02   p_cons 8.936500e-01   p_joint 2.060000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf66.6_1098_20000_0.0916_0.89365_0.206.png
                gene_name: CXorf66
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 27 percent done.
CTTNBP2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
Cons ci ratio: 1.427922e-02	ci left: 8.764362e-01	ci right 8.891399e-01	k: 8829	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
CTTNBP2NL   10000 perm   2 sec   (5701 perm/sec)   p_kst 1.478000e-01   p_cons 8.829000e-01   p_joint 2.969000e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2NL.5_1936_10000_0.1478_0.8829_0.2969.png
                gene_name: CTTNBP2NL
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 29 percent done.
CX3CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.692624e-02	ci left: 6.701514e-01	ci right 6.885440e-01	k: 6794	n:10000
Cons ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
KS ci ratio: 2.639624e-02	ci left: 6.788155e-01	ci right 6.970749e-01	k: 6880	n:10000
CX3CR1   10000 perm   2 sec   (5975 perm/sec)   p_kst 6.880000e-01   p_cons 2.347000e-01   p_joint 6.794000e-01

Outputting figure to mutsig2_images.part000000000045/CX3CR1.5_1172_10000_0.688_0.2347_0.6794.png
                gene_name: CX3CR1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 30 percent done.
CXCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
Cons ci ratio: 7.329722e-02	ci left: 2.141824e-01	ci right 2.305796e-01	k: 2223	n:10000
KS ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
CXCR2   10000 perm   2 sec   (5762 perm/sec)   p_kst 4.626000e-01   p_cons 2.223000e-01   p_joint 5.333000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR2.5_1087_10000_0.4626_0.2223_0.5333.png
                gene_name: CXCR2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 32 percent done.
CXXC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
Cons ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
KS ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
CXXC1   10000 perm   2 sec   (5585 perm/sec)   p_kst 4.116000e-01   p_cons 4.491000e-01   p_joint 5.040000e-01

Outputting figure to mutsig2_images.part000000000045/CXXC1.5_2043_10000_0.4116_0.4491_0.504.png
                gene_name: CXXC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 34 percent done.
CXorf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
CXorf21   10000 perm   2 sec   (5665 perm/sec)   p_kst 2.395000e-01   p_cons 3.920000e-01   p_joint 4.704000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf21.5_910_10000_0.2395_0.392_0.4704.png
                gene_name: CXorf21
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 36 percent done.
CUL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
CUL5   10000 perm   2 sec   (5785 perm/sec)   p_kst 9.416000e-01   p_cons 4.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CUL5.4_2419_10000_0.9416_0.4535_1.png
                gene_name: CUL5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CUTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
Cons ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
KS ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
CUTC   10000 perm   2 sec   (6652 perm/sec)   p_kst 7.430000e-01   p_cons 2.211000e-01   p_joint 6.638000e-01

Outputting figure to mutsig2_images.part000000000045/CUTC.4_858_10000_0.743_0.2211_0.6638.png
                gene_name: CUTC
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 39 percent done.
CWC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
Cons ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
KS ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
CWC27   10000 perm   2 sec   (6208 perm/sec)   p_kst 7.757000e-01   p_cons 2.445000e-01   p_joint 6.907000e-01

Outputting figure to mutsig2_images.part000000000045/CWC27.4_1475_10000_0.7757_0.2445_0.6907.png
                gene_name: CWC27
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 41 percent done.
CXCL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
Cons ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
KS ci ratio: 7.243911e-02	ci left: 2.182281e-01	ci right 2.347315e-01	k: 2264	n:10000
CXCL6   10000 perm   2 sec   (6326 perm/sec)   p_kst 2.264000e-01   p_cons 4.375000e-01   p_joint 5.127000e-01

Outputting figure to mutsig2_images.part000000000045/CXCL6.4_361_10000_0.2264_0.4375_0.5127.png
                gene_name: CXCL6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
CTSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
Cons ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
KS ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
CTSE   10000 perm   2 sec   (5927 perm/sec)   p_kst 9.192000e-01   p_cons 3.961000e-01   p_joint 6.603000e-01

Outputting figure to mutsig2_images.part000000000045/CTSE.3_1270_10000_0.9192_0.3961_0.6603.png
                gene_name: CTSE
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 45 percent done.
CTSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
KS ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
CTSF   10000 perm   2 sec   (5673 perm/sec)   p_kst 4.729000e-01   p_cons 7.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSF.3_1507_10000_0.4729_0.7723_1.png
                gene_name: CTSF
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
CTSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
Cons ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
KS ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
CTSL2   10000 perm   2 sec   (6536 perm/sec)   p_kst 1.495000e-01   p_cons 1.256000e-01   p_joint 1.083000e-01

Joint ci ratio: 6.393895e-02	ci left: 1.531180e-01	ci right 1.632815e-01	k: 3163	n:20000
Cons ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
KS ci ratio: 6.774517e-02	ci left: 1.385205e-01	ci right 1.482834e-01	k: 2867	n:20000
CTSL2   20000 perm   3 sec   (5781 perm/sec)   p_kst 1.433500e-01   p_cons 1.281000e-01   p_joint 1.581500e-01

Outputting figure to mutsig2_images.part000000000045/CTSL2.3_1033_20000_0.14335_0.1281_0.15815.png
                gene_name: CTSL2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 48 percent done.
CTTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
CTTN   10000 perm   2 sec   (5970 perm/sec)   p_kst 4.980000e-01   p_cons 6.030000e-02   p_joint 3.354000e-01

Joint ci ratio: 6.276466e-02	ci left: 1.580533e-01	ci right 1.683448e-01	k: 3263	n:20000
Cons ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
KS ci ratio: 2.787214e-02	ci left: 4.902464e-01	ci right 5.041544e-01	k: 9944	n:20000
CTTN   20000 perm   4 sec   (5318 perm/sec)   p_kst 4.972000e-01   p_cons 6.405000e-02   p_joint 1.631500e-01

Joint ci ratio: 5.044313e-02	ci left: 1.633231e-01	ci right 1.718081e-01	k: 5026	n:30000
Cons ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
KS ci ratio: 2.185527e-02	ci left: 5.117607e-01	ci right 5.231026e-01	k: 15523	n:30000
CTTN   30000 perm   6 sec   (5079 perm/sec)   p_kst 5.174333e-01   p_cons 6.370000e-02   p_joint 1.675333e-01

Outputting figure to mutsig2_images.part000000000045/CTTN.3_2131_30000_0.51743_0.0637_0.16753.png
                gene_name: CTTN
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 50 percent done.
CUL4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
Cons ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
KS ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
CUL4A   10000 perm   2 sec   (5682 perm/sec)   p_kst 6.632000e-01   p_cons 8.159000e-01   p_joint 6.683000e-01

Outputting figure to mutsig2_images.part000000000045/CUL4A.3_2360_10000_0.6632_0.8159_0.6683.png
                gene_name: CUL4A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 52 percent done.
CUL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
Cons ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
KS ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
CUL4B   10000 perm   2 sec   (5444 perm/sec)   p_kst 6.718000e-01   p_cons 3.383000e-01   p_joint 6.261000e-01

Outputting figure to mutsig2_images.part000000000045/CUL4B.3_2839_10000_0.6718_0.3383_0.6261.png
                gene_name: CUL4B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 54 percent done.
CUZD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
CUZD1   10000 perm   2 sec   (6393 perm/sec)   p_kst 2.282000e-01   p_cons 3.339000e-01   p_joint 2.197000e-01

Outputting figure to mutsig2_images.part000000000045/CUZD1.3_1860_10000_0.2282_0.3339_0.2197.png
                gene_name: CUZD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
CWC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
CWC15   10000 perm   2 sec   (6660 perm/sec)   p_kst 1.986000e-01   p_cons 1.949000e-01   p_joint 2.027000e-01

Outputting figure to mutsig2_images.part000000000045/CWC15.3_713_10000_0.1986_0.1949_0.2027.png
                gene_name: CWC15
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 57 percent done.
CWC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
CWC25   10000 perm   2 sec   (6375 perm/sec)   p_kst 9.070000e-02   p_cons 8.771000e-01   p_joint 1.802000e-01

Joint ci ratio: 4.255843e-02	ci left: 2.914671e-01	ci right 3.041917e-01	k: 5956	n:20000
Cons ci ratio: 1.038888e-02	ci left: 8.722159e-01	ci right 8.813742e-01	k: 17537	n:20000
KS ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
CWC25   20000 perm   4 sec   (5664 perm/sec)   p_kst 9.195000e-02   p_cons 8.768500e-01   p_joint 2.978000e-01

Outputting figure to mutsig2_images.part000000000045/CWC25.3_1318_20000_0.09195_0.87685_0.2978.png
                gene_name: CWC25
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 59 percent done.
CX3CL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
Cons ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
KS ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
CX3CL1   10000 perm   2 sec   (6424 perm/sec)   p_kst 9.560000e-01   p_cons 1.047000e-01   p_joint 4.418000e-01

Joint ci ratio: 4.309353e-02	ci left: 2.863003e-01	ci right 2.989601e-01	k: 5852	n:20000
Cons ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
KS ci ratio: 5.967011e-03	ci left: 9.528079e-01	ci right 9.585587e-01	k: 19115	n:20000
CX3CL1   20000 perm   4 sec   (5361 perm/sec)   p_kst 9.557500e-01   p_cons 1.013000e-01   p_joint 2.926000e-01

Outputting figure to mutsig2_images.part000000000045/CX3CL1.3_1206_20000_0.95575_0.1013_0.2926.png
                gene_name: CX3CL1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
CXCL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 2.729154e-02	ci left: 6.642096e-01	ci right 6.826893e-01	k: 6735	n:10000
CXCL9   10000 perm   2 sec   (6631 perm/sec)   p_kst 6.735000e-01   p_cons 5.736000e-01   p_joint 8.138000e-01

Outputting figure to mutsig2_images.part000000000045/CXCL9.3_394_10000_0.6735_0.5736_0.8138.png
                gene_name: CXCL9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
CXCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
KS ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
CXCR4   10000 perm   2 sec   (6421 perm/sec)   p_kst 6.139000e-01   p_cons 3.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXCR4.3_1094_10000_0.6139_0.3879_1.png
                gene_name: CXCR4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CXXC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 6.366378e-02	ci left: 2.660670e-01	ci right 2.836643e-01	k: 2748	n:10000
CXXC4   10000 perm   2 sec   (6029 perm/sec)   p_kst 2.748000e-01   p_cons 9.011000e-01   p_joint 4.898000e-01

Outputting figure to mutsig2_images.part000000000045/CXXC4.3_605_10000_0.2748_0.9011_0.4898.png
                gene_name: CXXC4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 66 percent done.
CXXC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
KS ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
CXXC5   10000 perm   2 sec   (6358 perm/sec)   p_kst 4.723000e-01   p_cons 8.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXXC5.3_977_10000_0.4723_0.882_1.png
                gene_name: CXXC5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CXorf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
Cons ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
KS ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
CXorf36   10000 perm   2 sec   (6134 perm/sec)   p_kst 3.615000e-01   p_cons 1.650000e-01   p_joint 2.839000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf36.3_1377_10000_0.3615_0.165_0.2839.png
                gene_name: CXorf36
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 70 percent done.
CXorf40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
KS ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
CXorf40B   10000 perm   1 sec   (6726 perm/sec)   p_kst 1.739000e-01   p_cons 8.312000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf40B.3_485_10000_0.1739_0.8312_0.3885.png
                gene_name: CXorf40B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 71 percent done.
CXorf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
CXorf56   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.564000e-01   p_cons 9.112000e-01   p_joint 2.862000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf56.3_697_10000_0.2564_0.9112_0.2862.png
                gene_name: CXorf56
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 73 percent done.
CTSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
CTSD   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.324000e-01   p_cons 7.202000e-01   p_joint 4.196000e-01

Joint ci ratio: 1.981867e-02	ci left: 6.550947e-01	ci right 6.682583e-01	k: 13234	n:20000
Cons ci ratio: 1.746966e-02	ci left: 7.093924e-01	ci right 7.219448e-01	k: 14314	n:20000
KS ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
CTSD   20000 perm   3 sec   (5816 perm/sec)   p_kst 1.305500e-01   p_cons 7.157000e-01   p_joint 6.617000e-01

Outputting figure to mutsig2_images.part000000000045/CTSD.2_1275_20000_0.13055_0.7157_0.6617.png
                gene_name: CTSD
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 75 percent done.
CTSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
KS ci ratio: 3.958604e-03	ci left: 9.878505e-01	ci right 9.918564e-01	k: 9900	n:10000
CTSG   10000 perm   1 sec   (6726 perm/sec)   p_kst 9.900000e-01   p_cons 6.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSG.2_788_10000_0.99_0.668_1.png
                gene_name: CTSG
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
CTSZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
CTSZ   10000 perm   1 sec   (6873 perm/sec)   p_kst 3.397000e-01   p_cons 3.899000e-01   p_joint 5.765000e-01

Outputting figure to mutsig2_images.part000000000045/CTSZ.2_936_10000_0.3397_0.3899_0.5765.png
                gene_name: CTSZ
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 79 percent done.
CUEDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
Cons ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
KS ci ratio: 3.407096e-02	ci left: 5.598265e-01	ci right 5.793330e-01	k: 5696	n:10000
CUEDC1   10000 perm   2 sec   (6622 perm/sec)   p_kst 5.696000e-01   p_cons 5.810000e-02   p_joint 9.380000e-02

Joint ci ratio: 3.345494e-02	ci left: 4.001803e-01	ci right 4.138467e-01	k: 8140	n:20000
Cons ci ratio: 1.128455e-01	ci left: 5.368046e-02	ci right 6.014911e-02	k: 1137	n:20000
KS ci ratio: 2.386314e-02	ci left: 5.674120e-01	ci right 5.811664e-01	k: 11486	n:20000
CUEDC1   20000 perm   3 sec   (5870 perm/sec)   p_kst 5.743000e-01   p_cons 5.685000e-02   p_joint 4.070000e-01

Joint ci ratio: 9.143285e-03	ci left: 8.557185e-01	ci right 8.636117e-01	k: 25791	n:30000
Cons ci ratio: 9.101331e-02	ci left: 5.557693e-02	ci right 6.090902e-02	k: 1746	n:30000
KS ci ratio: 1.947659e-02	ci left: 5.688816e-01	ci right 5.801040e-01	k: 17235	n:30000
CUEDC1   30000 perm   5 sec   (5573 perm/sec)   p_kst 5.745000e-01   p_cons 5.820000e-02   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000045/CUEDC1.2_1197_30000_0.5745_0.0582_0.8597.png
                gene_name: CUEDC1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.86 

Current progress: 80 percent done.
CXCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
CXCL1   10000 perm   1 sec   (7155 perm/sec)   p_kst 4.019000e-01   p_cons 5.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXCL1.2_340_10000_0.4019_0.518_1.png
                gene_name: CXCL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
Cons ci ratio: 2.838430e-02	ci left: 6.465950e-01	ci right 6.653141e-01	k: 6560	n:10000
KS ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
CXCR1   10000 perm   1 sec   (6920 perm/sec)   p_kst 1.457000e-01   p_cons 6.560000e-01   p_joint 2.740000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR1.2_1057_10000_0.1457_0.656_0.274.png
                gene_name: CXCR1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 84 percent done.
CXCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
Cons ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
KS ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
CXCR5   10000 perm   1 sec   (6779 perm/sec)   p_kst 2.117000e-01   p_cons 3.321000e-01   p_joint 2.695000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR5.2_1127_10000_0.2117_0.3321_0.2695.png
                gene_name: CXCR5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 86 percent done.
CXorf1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 2.914447e-03	ci left: 9.929600e-01	ci right 9.959408e-01	k: 9946	n:10000
CXorf1   10000 perm   1 sec   (7343 perm/sec)   p_kst 9.946000e-01   p_cons 6.030000e-02   p_joint 1.246000e-01

Joint ci ratio: 8.051804e-02	ci left: 1.016679e-01	ci right 1.102470e-01	k: 2118	n:20000
Cons ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
KS ci ratio: 2.162281e-03	ci left: 9.928297e-01	ci right 9.950230e-01	k: 19880	n:20000
CXorf1   20000 perm   3 sec   (6407 perm/sec)   p_kst 9.940000e-01   p_cons 7.330000e-02   p_joint 1.059000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf1.2_340_20000_0.994_0.0733_0.1059.png
                gene_name: CXorf1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 88 percent done.
CXorf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
Cons ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
KS ci ratio: 7.106126e-02	ci left: 2.249406e-01	ci right 2.416151e-01	k: 2332	n:10000
CXorf23   10000 perm   2 sec   (6127 perm/sec)   p_kst 2.332000e-01   p_cons 4.516000e-01   p_joint 8.624000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf23.2_2093_10000_0.2332_0.4516_0.8624.png
                gene_name: CXorf23
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 89 percent done.
CXorf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
CXorf27   10000 perm   1 sec   (7493 perm/sec)   p_kst 2.110000e-02   p_cons 8.028000e-01   p_joint 1.089000e-01

Joint ci ratio: 5.761499e-02	ci left: 1.825069e-01	ci right 1.933840e-01	k: 3758	n:20000
Cons ci ratio: 1.305311e-02	ci left: 8.130871e-01	ci right 8.238201e-01	k: 16370	n:20000
KS ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
CXorf27   20000 perm   3 sec   (6462 perm/sec)   p_kst 2.075000e-02   p_cons 8.185000e-01   p_joint 1.879000e-01

Joint ci ratio: 4.580368e-02	ci left: 1.917191e-01	ci right 2.007398e-01	k: 5886	n:30000
Cons ci ratio: 1.051997e-02	ci left: 8.179602e-01	ci right 8.266439e-01	k: 24670	n:30000
KS ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
CXorf27   30000 perm   5 sec   (6122 perm/sec)   p_kst 2.050000e-02   p_cons 8.223333e-01   p_joint 1.962000e-01

Joint ci ratio: 4.033440e-02	ci left: 1.871578e-01	ci right 1.948871e-01	k: 7640	n:40000
Cons ci ratio: 9.102197e-03	ci left: 8.188205e-01	ci right 8.263326e-01	k: 32904	n:40000
KS ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
CXorf27   40000 perm   7 sec   (5858 perm/sec)   p_kst 2.057500e-02   p_cons 8.226000e-01   p_joint 1.910000e-01

Joint ci ratio: 3.269878e-02	ci left: 2.195961e-01	ci right 2.269160e-01	k: 11162	n:50000
Cons ci ratio: 8.150705e-03	ci left: 8.188804e-01	ci right 8.256021e-01	k: 41113	n:50000
KS ci ratio: 1.194056e-01	ci left: 1.983873e-02	ci right 2.237730e-02	k: 1054	n:50000
CXorf27   50000 perm   9 sec   (5663 perm/sec)   p_kst 2.108000e-02   p_cons 8.222600e-01   p_joint 2.232400e-01

Joint ci ratio: 3.293031e-02	ci left: 1.878945e-01	ci right 1.942021e-01	k: 11462	n:60000
Cons ci ratio: 7.463253e-03	ci left: 8.182779e-01	ci right 8.244243e-01	k: 49282	n:60000
KS ci ratio: 1.098022e-01	ci left: 1.965674e-02	ci right 2.195660e-02	k: 1247	n:60000
CXorf27   60000 perm   11 sec   (5512 perm/sec)   p_kst 2.078333e-02   p_cons 8.213667e-01   p_joint 1.910333e-01

Joint ci ratio: 3.048263e-02	ci left: 1.881789e-01	ci right 1.940181e-01	k: 13376	n:70000
Cons ci ratio: 6.947485e-03	ci left: 8.168892e-01	ci right 8.225985e-01	k: 57383	n:70000
KS ci ratio: 1.010563e-01	ci left: 1.997843e-02	ci right 2.211868e-02	k: 1472	n:70000
CXorf27   70000 perm   13 sec   (5375 perm/sec)   p_kst 2.102857e-02   p_cons 8.197571e-01   p_joint 1.910857e-01

Joint ci ratio: 2.849317e-02	ci left: 1.885919e-01	ci right 1.940555e-01	k: 15305	n:80000
Cons ci ratio: 6.507171e-03	ci left: 8.166913e-01	ci right 8.220355e-01	k: 65550	n:80000
KS ci ratio: 9.372041e-02	ci left: 2.039613e-02	ci right 2.241379e-02	k: 1711	n:80000
CXorf27   80000 perm   15 sec   (5235 perm/sec)   p_kst 2.138750e-02   p_cons 8.193750e-01   p_joint 1.913125e-01

Outputting figure to mutsig2_images.part000000000045/CXorf27.2_358_80000_0.021388_0.81937_0.19131.png
                gene_name: CXorf27
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
CXorf40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
Cons ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
KS ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
CXorf40A   10000 perm   1 sec   (7086 perm/sec)   p_kst 8.597000e-01   p_cons 1.670000e-02   p_joint 3.840000e-02

Joint ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 1.119615e-02	ci left: 8.548602e-01	ci right 8.645350e-01	k: 17195	n:20000
CXorf40A   20000 perm   3 sec   (6204 perm/sec)   p_kst 8.597500e-01   p_cons 1.690000e-02   p_joint 4.850000e-02

Joint ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
Cons ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
KS ci ratio: 9.158437e-03	ci left: 8.553139e-01	ci right 8.632164e-01	k: 25779	n:30000
CXorf40A   30000 perm   5 sec   (5868 perm/sec)   p_kst 8.593000e-01   p_cons 1.686667e-02   p_joint 3.976667e-02

Joint ci ratio: 1.222752e-01	ci left: 2.351631e-02	ci right 2.660316e-02	k: 1001	n:40000
Cons ci ratio: 1.509714e-01	ci left: 1.532245e-02	ci right 1.784843e-02	k: 662	n:40000
KS ci ratio: 7.928882e-03	ci left: 8.559297e-01	ci right 8.627681e-01	k: 34375	n:40000
CXorf40A   40000 perm   7 sec   (5653 perm/sec)   p_kst 8.593750e-01   p_cons 1.655000e-02   p_joint 2.502500e-02

Joint ci ratio: 1.114608e-01	ci left: 2.279291e-02	ci right 2.550273e-02	k: 1206	n:50000
Cons ci ratio: 1.362716e-01	ci left: 1.516958e-02	ci right 1.740709e-02	k: 813	n:50000
KS ci ratio: 7.114477e-03	ci left: 8.555151e-01	ci right 8.616432e-01	k: 42930	n:50000
CXorf40A   50000 perm   9 sec   (5480 perm/sec)   p_kst 8.586000e-01   p_cons 1.626000e-02   p_joint 2.412000e-02

Joint ci ratio: 1.011570e-01	ci left: 2.318018e-02	ci right 2.566612e-02	k: 1464	n:60000
Cons ci ratio: 1.253014e-01	ci left: 1.504344e-02	ci right 1.707043e-02	k: 962	n:60000
KS ci ratio: 6.495905e-03	ci left: 8.557359e-01	ci right 8.613294e-01	k: 51513	n:60000
CXorf40A   60000 perm   11 sec   (5327 perm/sec)   p_kst 8.585500e-01   p_cons 1.603333e-02   p_joint 2.440000e-02

Joint ci ratio: 9.712164e-02	ci left: 2.163719e-02	ci right 2.385976e-02	k: 1591	n:70000
Cons ci ratio: 1.159281e-01	ci left: 1.513895e-02	ci right 1.701576e-02	k: 1124	n:70000
KS ci ratio: 6.028689e-03	ci left: 8.553491e-01	ci right 8.605355e-01	k: 60057	n:70000
CXorf40A   70000 perm   13 sec   (5191 perm/sec)   p_kst 8.579571e-01   p_cons 1.605714e-02   p_joint 2.272857e-02

Joint ci ratio: 8.015976e-02	ci left: 2.786029e-02	ci right 3.019903e-02	k: 2321	n:80000
Cons ci ratio: 1.084286e-01	ci left: 1.520268e-02	ci right 1.695767e-02	k: 1285	n:80000
KS ci ratio: 5.653635e-03	ci left: 8.548948e-01	ci right 8.597542e-01	k: 68587	n:80000
CXorf40A   80000 perm   16 sec   (5061 perm/sec)   p_kst 8.573375e-01   p_cons 1.606250e-02   p_joint 2.901250e-02

Joint ci ratio: 8.307047e-02	ci left: 2.314053e-02	ci right 2.515697e-02	k: 2172	n:90000
Cons ci ratio: 1.023264e-01	ci left: 1.522281e-02	ci right 1.687526e-02	k: 1443	n:90000
KS ci ratio: 5.326989e-03	ci left: 8.551880e-01	ci right 8.597667e-01	k: 77174	n:90000
CXorf40A   90000 perm   18 sec   (4954 perm/sec)   p_kst 8.574889e-01   p_cons 1.603333e-02   p_joint 2.413333e-02

Joint ci ratio: 7.133726e-02	ci left: 2.826341e-02	ci right 3.036401e-02	k: 2930	n:100000
Cons ci ratio: 9.705836e-02	ci left: 1.527042e-02	ci right 1.683784e-02	k: 1604	n:100000
KS ci ratio: 5.047597e-03	ci left: 8.555998e-01	ci right 8.599394e-01	k: 85778	n:100000
CXorf40A   100000 perm   21 sec   (4851 perm/sec)   p_kst 8.577800e-01   p_cons 1.604000e-02   p_joint 2.930000e-02

Outputting figure to mutsig2_images.part000000000045/CXorf40A.2_498_100000_0.85778_0.01604_0.0293.png
                gene_name: CXorf40A
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 93 percent done.
CXorf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
Cons ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
KS ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
CXorf41   10000 perm   1 sec   (7171 perm/sec)   p_kst 8.338000e-01   p_cons 8.781000e-01   p_joint 9.720000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf41.2_669_10000_0.8338_0.8781_0.972.png
                gene_name: CXorf41
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 95 percent done.
CXorf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.449905e-02	ci left: 7.101782e-01	ci right 7.278940e-01	k: 7191	n:10000
KS ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
CXorf57   10000 perm   2 sec   (5864 perm/sec)   p_kst 7.293000e-01   p_cons 7.191000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXorf57.2_2624_10000_0.7293_0.7191_1.png
                gene_name: CXorf57
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CXorf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
CXorf58   10000 perm   1 sec   (6769 perm/sec)   p_kst 3.400000e-03   p_cons 2.100000e-02   p_joint 1.600000e-03

Joint ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
Cons ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
KS ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
CXorf58   20000 perm   3 sec   (5902 perm/sec)   p_kst 3.150000e-03   p_cons 1.890000e-02   p_joint 7.500000e-04

Joint ci ratio: 9.797223e-01	ci left: 2.798723e-04	ci right 8.245401e-04	k: 15	n:30000
Cons ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
KS ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
CXorf58   30000 perm   5 sec   (5577 perm/sec)   p_kst 3.133333e-03   p_cons 2.240000e-02   p_joint 5.000000e-04

Joint ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
Cons ci ratio: 1.297781e-01	ci left: 2.085104e-02	ci right 2.376888e-02	k: 891	n:40000
KS ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
CXorf58   40000 perm   7 sec   (5353 perm/sec)   p_kst 2.925000e-03   p_cons 2.227500e-02   p_joint 7.000000e-04

Joint ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
Cons ci ratio: 1.165055e-01	ci left: 2.084867e-02	ci right 2.344723e-02	k: 1106	n:50000
KS ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
CXorf58   50000 perm   10 sec   (5190 perm/sec)   p_kst 2.900000e-03   p_cons 2.212000e-02   p_joint 6.600000e-04

Joint ci ratio: 6.274931e-01	ci left: 4.482221e-04	ci right 8.691969e-04	k: 38	n:60000
Cons ci ratio: 1.066176e-01	ci left: 2.085737e-02	ci right 2.322251e-02	k: 1321	n:60000
KS ci ratio: 2.967408e-01	ci left: 2.470166e-03	ci right 3.345682e-03	k: 173	n:60000
CXorf58   60000 perm   12 sec   (5050 perm/sec)   p_kst 2.883333e-03   p_cons 2.201667e-02   p_joint 6.333333e-04

Joint ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
Cons ci ratio: 9.868702e-02	ci left: 2.095396e-02	ci right 2.314305e-02	k: 1542	n:70000
KS ci ratio: 2.760963e-01	ci left: 2.475326e-03	ci right 3.281045e-03	k: 200	n:70000
CXorf58   70000 perm   14 sec   (4936 perm/sec)   p_kst 2.857143e-03   p_cons 2.202857e-02   p_joint 6.714286e-04

Joint ci ratio: 2.542523e-01	ci left: 2.586062e-03	ci right 3.350689e-03	k: 236	n:80000
Cons ci ratio: 9.195217e-02	ci left: 2.119015e-02	ci right 2.324470e-02	k: 1776	n:80000
KS ci ratio: 2.542523e-01	ci left: 2.586062e-03	ci right 3.350689e-03	k: 236	n:80000
CXorf58   80000 perm   17 sec   (4835 perm/sec)   p_kst 2.950000e-03   p_cons 2.220000e-02   p_joint 2.950000e-03

Joint ci ratio: 4.860379e-01	ci left: 5.476839e-04	ci right 9.079836e-04	k: 64	n:90000
Cons ci ratio: 8.614684e-02	ci left: 2.151921e-02	ci right 2.346729e-02	k: 2023	n:90000
KS ci ratio: 2.355929e-01	ci left: 2.705514e-03	ci right 3.438206e-03	k: 275	n:90000
CXorf58   90000 perm   19 sec   (4744 perm/sec)   p_kst 3.055556e-03   p_cons 2.247778e-02   p_joint 7.111111e-04

Joint ci ratio: 4.717474e-01	ci left: 5.280841e-04	ci right 8.619835e-04	k: 68	n:100000
Cons ci ratio: 8.247752e-02	ci left: 2.117813e-02	ci right 2.300973e-02	k: 2208	n:100000
KS ci ratio: 2.237473e-01	ci left: 2.717714e-03	ci right 3.411606e-03	k: 305	n:100000
CXorf58   100000 perm   22 sec   (4649 perm/sec)   p_kst 3.050000e-03   p_cons 2.208000e-02   p_joint 6.800000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 7.858801e-02	ci left: 2.124824e-02	ci right 2.299527e-02	k: 2432	n:110000
KS ci ratio: 2.144883e-01	ci left: 2.702634e-03	ci right 3.360365e-03	k: 332	n:110000
CXorf58   110000 perm   24 sec   (4554 perm/sec)   p_kst 3.018182e-03   p_cons 2.210909e-02   p_joint 7.181818e-04

Joint ci ratio: 4.201140e-01	ci left: 5.732796e-04	ci right 8.850030e-04	k: 86	n:120000
Cons ci ratio: 7.556586e-02	ci left: 2.110386e-02	ci right 2.276935e-02	k: 2631	n:120000
KS ci ratio: 2.037522e-01	ci left: 2.761721e-03	ci right 3.396004e-03	k: 368	n:120000
CXorf58   120000 perm   27 sec   (4463 perm/sec)   p_kst 3.066667e-03   p_cons 2.192500e-02   p_joint 7.166667e-04

Joint ci ratio: 2.554804e-01	ci left: 1.576912e-03	ci right 2.045758e-03	k: 234	n:130000
Cons ci ratio: 7.263174e-02	ci left: 2.111880e-02	ci right 2.271801e-02	k: 2848	n:130000
KS ci ratio: 1.969360e-01	ci left: 2.739247e-03	ci right 3.344795e-03	k: 394	n:130000
CXorf58   130000 perm   30 sec   (4378 perm/sec)   p_kst 3.030769e-03   p_cons 2.190769e-02   p_joint 1.800000e-03

Joint ci ratio: 3.879950e-01	ci left: 5.876526e-04	ci right 8.765331e-04	k: 101	n:140000
Cons ci ratio: 6.987517e-02	ci left: 2.121692e-02	ci right 2.276011e-02	k: 3077	n:140000
KS ci ratio: 1.891898e-01	ci left: 2.767915e-03	ci right 3.352968e-03	k: 427	n:140000
CXorf58   140000 perm   33 sec   (4301 perm/sec)   p_kst 3.050000e-03   p_cons 2.197857e-02   p_joint 7.214286e-04

Joint ci ratio: 3.806082e-01	ci left: 5.725652e-04	ci right 8.473302e-04	k: 105	n:150000
Cons ci ratio: 6.731675e-02	ci left: 2.136196e-02	ci right 2.285659e-02	k: 3315	n:150000
KS ci ratio: 1.828891e-01	ci left: 2.774075e-03	ci right 3.338738e-03	k: 457	n:150000
CXorf58   150000 perm   35 sec   (4226 perm/sec)   p_kst 3.046667e-03   p_cons 2.210000e-02   p_joint 7.000000e-04

Joint ci ratio: 3.702744e-01	ci left: 5.707416e-04	ci right 8.353948e-04	k: 111	n:160000
Cons ci ratio: 6.499215e-02	ci left: 2.150822e-02	ci right 2.295916e-02	k: 3556	n:160000
KS ci ratio: 1.759176e-01	ci left: 2.821569e-03	ci right 3.371681e-03	k: 494	n:160000
CXorf58   160000 perm   39 sec   (4153 perm/sec)   p_kst 3.087500e-03   p_cons 2.222500e-02   p_joint 6.937500e-04

Joint ci ratio: 3.622783e-01	ci left: 5.638732e-04	ci right 8.183617e-04	k: 116	n:170000
Cons ci ratio: 6.307994e-02	ci left: 2.151064e-02	ci right 2.291748e-02	k: 3775	n:170000
KS ci ratio: 1.708180e-01	ci left: 2.824409e-03	ci right 3.357466e-03	k: 524	n:170000
CXorf58   170000 perm   42 sec   (4082 perm/sec)   p_kst 3.082353e-03   p_cons 2.220588e-02   p_joint 6.823529e-04

Joint ci ratio: 3.562429e-01	ci left: 5.527629e-04	ci right 7.971179e-04	k: 120	n:180000
Cons ci ratio: 6.113959e-02	ci left: 2.164468e-02	ci right 2.301521e-02	k: 4018	n:180000
KS ci ratio: 1.652440e-01	ci left: 2.859092e-03	ci right 3.379337e-03	k: 560	n:180000
CXorf58   180000 perm   45 sec   (4017 perm/sec)   p_kst 3.111111e-03   p_cons 2.232222e-02   p_joint 6.666667e-04

Joint ci ratio: 3.450187e-01	ci left: 5.620685e-04	ci right 8.009617e-04	k: 128	n:190000
Cons ci ratio: 5.948223e-02	ci left: 2.168222e-02	ci right 2.301662e-02	k: 4245	n:190000
KS ci ratio: 1.611327e-01	ci left: 2.855012e-03	ci right 3.360337e-03	k: 589	n:190000
CXorf58   190000 perm   48 sec   (3953 perm/sec)   p_kst 3.100000e-03   p_cons 2.234211e-02   p_joint 6.736842e-04

Joint ci ratio: 3.311837e-01	ci left: 5.842989e-04	ci right 8.205622e-04	k: 139	n:200000
Cons ci ratio: 5.783382e-02	ci left: 2.180518e-02	ci right 2.310871e-02	k: 4490	n:200000
KS ci ratio: 1.570594e-01	ci left: 2.861092e-03	ci right 3.353485e-03	k: 620	n:200000
CXorf58   200000 perm   51 sec   (3892 perm/sec)   p_kst 3.100000e-03   p_cons 2.245000e-02   p_joint 6.950000e-04

Joint ci ratio: 3.243079e-01	ci left: 5.826960e-04	ci right 8.124019e-04	k: 145	n:210000
Cons ci ratio: 5.644953e-02	ci left: 2.181357e-02	ci right 2.308537e-02	k: 4713	n:210000
KS ci ratio: 1.537540e-01	ci left: 2.848419e-03	ci right 3.327364e-03	k: 647	n:210000
CXorf58   210000 perm   55 sec   (3832 perm/sec)   p_kst 3.080952e-03   p_cons 2.244286e-02   p_joint 6.904762e-04

Joint ci ratio: 3.147503e-01	ci left: 5.938394e-04	ci right 8.196522e-04	k: 154	n:220000
Cons ci ratio: 5.511444e-02	ci left: 2.185741e-02	ci right 2.310067e-02	k: 4944	n:220000
KS ci ratio: 1.498714e-01	ci left: 2.867623e-03	ci right 3.336529e-03	k: 681	n:220000
CXorf58   220000 perm   58 sec   (3777 perm/sec)   p_kst 3.095455e-03   p_cons 2.247273e-02   p_joint 7.000000e-04

Joint ci ratio: 3.069286e-01	ci left: 6.000907e-04	ci right 8.215015e-04	k: 162	n:230000
Cons ci ratio: 5.377953e-02	ci left: 2.197070e-02	ci right 2.318919e-02	k: 5192	n:230000
KS ci ratio: 1.467838e-01	ci left: 2.864351e-03	ci right 3.322227e-03	k: 710	n:230000
CXorf58   230000 perm   62 sec   (3721 perm/sec)   p_kst 3.086957e-03   p_cons 2.257391e-02   p_joint 7.043478e-04

Joint ci ratio: 1.430097e-01	ci left: 2.897600e-03	ci right 3.347865e-03	k: 748	n:240000
Cons ci ratio: 5.262129e-02	ci left: 2.200496e-02	ci right 2.319827e-02	k: 5423	n:240000
KS ci ratio: 1.430097e-01	ci left: 2.897600e-03	ci right 3.347865e-03	k: 748	n:240000
CXorf58   240000 perm   65 sec   (3669 perm/sec)   p_kst 3.116667e-03   p_cons 2.259583e-02   p_joint 3.116667e-03

Joint ci ratio: 2.945403e-01	ci left: 6.038604e-04	ci right 8.159922e-04	k: 176	n:250000
Cons ci ratio: 5.150220e-02	ci left: 2.206439e-02	ci right 2.323472e-02	k: 5661	n:250000
KS ci ratio: 1.399592e-01	ci left: 2.909025e-03	ci right 3.350619e-03	k: 781	n:250000
CXorf58   250000 perm   69 sec   (3619 perm/sec)   p_kst 3.124000e-03   p_cons 2.264400e-02   p_joint 7.040000e-04

Joint ci ratio: 2.850338e-01	ci left: 6.234362e-04	ci right 8.341050e-04	k: 188	n:260000
Cons ci ratio: 5.040790e-02	ci left: 2.215748e-02	ci right 2.330704e-02	k: 5909	n:260000
KS ci ratio: 1.370117e-01	ci left: 2.923379e-03	ci right 3.357044e-03	k: 815	n:260000
CXorf58   260000 perm   73 sec   (3570 perm/sec)   p_kst 3.134615e-03   p_cons 2.272692e-02   p_joint 7.230769e-04

Joint ci ratio: 2.750261e-01	ci left: 6.485592e-04	ci right 8.586931e-04	k: 202	n:270000
Cons ci ratio: 4.945452e-02	ci left: 2.217805e-02	ci right 2.330630e-02	k: 6139	n:270000
KS ci ratio: 1.336135e-01	ci left: 2.965400e-03	ci right 3.393522e-03	k: 857	n:270000
CXorf58   270000 perm   77 sec   (3521 perm/sec)   p_kst 3.174074e-03   p_cons 2.273704e-02   p_joint 7.481481e-04

Joint ci ratio: 1.315607e-01	ci left: 2.952722e-03	ci right 3.371952e-03	k: 884	n:280000
Cons ci ratio: 4.861578e-02	ci left: 2.214088e-02	ci right 2.324760e-02	k: 6353	n:280000
KS ci ratio: 1.315607e-01	ci left: 2.952722e-03	ci right 3.371952e-03	k: 884	n:280000
CXorf58   280000 perm   81 sec   (3474 perm/sec)   p_kst 3.157143e-03   p_cons 2.268929e-02   p_joint 3.157143e-03

Joint ci ratio: 2.691278e-01	ci left: 6.327480e-04	ci right 8.326202e-04	k: 211	n:290000
Cons ci ratio: 4.773287e-02	ci left: 2.218481e-02	ci right 2.327303e-02	k: 6590	n:290000
KS ci ratio: 1.296710e-01	ci left: 2.937628e-03	ci right 3.348263e-03	k: 910	n:290000
CXorf58   290000 perm   85 sec   (3430 perm/sec)   p_kst 3.137931e-03   p_cons 2.272414e-02   p_joint 7.275862e-04

Joint ci ratio: 2.653990e-01	ci left: 6.303164e-04	ci right 8.262032e-04	k: 217	n:300000
Cons ci ratio: 4.687881e-02	ci left: 2.224246e-02	ci right 2.331346e-02	k: 6832	n:300000
KS ci ratio: 1.277921e-01	ci left: 2.926808e-03	ci right 3.329552e-03	k: 937	n:300000
CXorf58   300000 perm   89 sec   (3386 perm/sec)   p_kst 3.123333e-03   p_cons 2.277333e-02   p_joint 7.233333e-04

Joint ci ratio: 1.259925e-01	ci left: 2.916726e-03	ci right 3.312008e-03	k: 964	n:310000
Cons ci ratio: 4.600915e-02	ci left: 2.235396e-02	ci right 2.340983e-02	k: 7092	n:310000
KS ci ratio: 1.259925e-01	ci left: 2.916726e-03	ci right 3.312008e-03	k: 964	n:310000
CXorf58   310000 perm   93 sec   (3344 perm/sec)   p_kst 3.109677e-03   p_cons 2.287742e-02   p_joint 3.109677e-03

Joint ci ratio: 1.238916e-01	ci left: 2.925481e-03	ci right 3.314854e-03	k: 997	n:320000
Cons ci ratio: 4.525549e-02	ci left: 2.239067e-02	ci right 2.343050e-02	k: 7330	n:320000
KS ci ratio: 1.238916e-01	ci left: 2.925481e-03	ci right 3.314854e-03	k: 997	n:320000
CXorf58   320000 perm   97 sec   (3303 perm/sec)   p_kst 3.115625e-03   p_cons 2.290625e-02   p_joint 3.115625e-03

Joint ci ratio: 1.211287e-01	ci left: 2.971956e-03	ci right 3.358062e-03	k: 1043	n:330000
Cons ci ratio: 4.453467e-02	ci left: 2.242828e-02	ci right 2.345285e-02	k: 7569	n:330000
KS ci ratio: 1.211287e-01	ci left: 2.971956e-03	ci right 3.358062e-03	k: 1043	n:330000
CXorf58   330000 perm   101 sec   (3261 perm/sec)   p_kst 3.160606e-03   p_cons 2.293636e-02   p_joint 3.160606e-03

Joint ci ratio: 1.199304e-01	ci left: 2.944446e-03	ci right 3.322925e-03	k: 1064	n:340000
Cons ci ratio: 4.387600e-02	ci left: 2.243471e-02	ci right 2.344403e-02	k: 7798	n:340000
KS ci ratio: 1.199304e-01	ci left: 2.944446e-03	ci right 3.322925e-03	k: 1064	n:340000
CXorf58   340000 perm   106 sec   (3221 perm/sec)   p_kst 3.129412e-03   p_cons 2.293529e-02   p_joint 3.129412e-03

Joint ci ratio: 1.184937e-01	ci left: 2.932388e-03	ci right 3.304485e-03	k: 1090	n:350000
Cons ci ratio: 4.323469e-02	ci left: 2.245219e-02	ci right 2.344716e-02	k: 8031	n:350000
KS ci ratio: 1.184937e-01	ci left: 2.932388e-03	ci right 3.304485e-03	k: 1090	n:350000
CXorf58   350000 perm   110 sec   (3182 perm/sec)   p_kst 3.114286e-03   p_cons 2.294571e-02   p_joint 3.114286e-03

Joint ci ratio: 1.171073e-01	ci left: 2.921026e-03	ci right 3.287045e-03	k: 1116	n:360000
Cons ci ratio: 4.262862e-02	ci left: 2.246055e-02	ci right 2.344159e-02	k: 8261	n:360000
KS ci ratio: 1.171073e-01	ci left: 2.921026e-03	ci right 3.287045e-03	k: 1116	n:360000
CXorf58   360000 perm   114 sec   (3144 perm/sec)   p_kst 3.100000e-03   p_cons 2.294722e-02   p_joint 3.100000e-03

Joint ci ratio: 1.158703e-01	ci left: 2.905053e-03	ci right 3.264961e-03	k: 1140	n:370000
Cons ci ratio: 4.208033e-02	ci left: 2.243378e-02	ci right 2.340074e-02	k: 8478	n:370000
KS ci ratio: 1.158703e-01	ci left: 2.905053e-03	ci right 3.264961e-03	k: 1140	n:370000
CXorf58   370000 perm   119 sec   (3107 perm/sec)   p_kst 3.081081e-03   p_cons 2.291351e-02   p_joint 3.081081e-03

Joint ci ratio: 1.147704e-01	ci left: 2.884827e-03	ci right 3.238607e-03	k: 1162	n:380000
Cons ci ratio: 4.156244e-02	ci left: 2.239807e-02	ci right 2.335133e-02	k: 8691	n:380000
KS ci ratio: 1.147704e-01	ci left: 2.884827e-03	ci right 3.238607e-03	k: 1162	n:380000
CXorf58   380000 perm   124 sec   (3070 perm/sec)   p_kst 3.057895e-03   p_cons 2.287105e-02   p_joint 3.057895e-03

Joint ci ratio: 1.132707e-01	ci left: 2.888078e-03	ci right 3.237319e-03	k: 1193	n:390000
Cons ci ratio: 4.093871e-02	ci left: 2.249880e-02	ci right 2.344164e-02	k: 8957	n:390000
KS ci ratio: 1.132707e-01	ci left: 2.888078e-03	ci right 3.237319e-03	k: 1193	n:390000
CXorf58   390000 perm   128 sec   (3035 perm/sec)   p_kst 3.058974e-03   p_cons 2.296667e-02   p_joint 3.058974e-03

Joint ci ratio: 1.119658e-01	ci left: 2.883903e-03	ci right 3.228358e-03	k: 1221	n:400000
Cons ci ratio: 4.045234e-02	ci left: 2.247330e-02	ci right 2.340363e-02	k: 9174	n:400000
KS ci ratio: 1.119658e-01	ci left: 2.883903e-03	ci right 3.228358e-03	k: 1221	n:400000
CXorf58   400000 perm   133 sec   (3000 perm/sec)   p_kst 3.052500e-03   p_cons 2.293500e-02   p_joint 3.052500e-03

Joint ci ratio: 1.107940e-01	ci left: 2.875212e-03	ci right 3.214799e-03	k: 1247	n:410000
Cons ci ratio: 3.993724e-02	ci left: 2.249983e-02	ci right 2.341912e-02	k: 9412	n:410000
KS ci ratio: 1.107940e-01	ci left: 2.875212e-03	ci right 3.214799e-03	k: 1247	n:410000
CXorf58   410000 perm   138 sec   (2966 perm/sec)   p_kst 3.041463e-03   p_cons 2.295610e-02   p_joint 3.041463e-03

Joint ci ratio: 1.093573e-01	ci left: 2.883163e-03	ci right 3.218989e-03	k: 1280	n:420000
Cons ci ratio: 3.950841e-02	ci left: 2.244972e-02	ci right 2.335688e-02	k: 9618	n:420000
KS ci ratio: 1.093573e-01	ci left: 2.883163e-03	ci right 3.218989e-03	k: 1280	n:420000
CXorf58   420000 perm   143 sec   (2933 perm/sec)   p_kst 3.047619e-03   p_cons 2.290000e-02   p_joint 3.047619e-03

Joint ci ratio: 1.082647e-01	ci left: 2.874931e-03	ci right 3.206240e-03	k: 1306	n:430000
Cons ci ratio: 3.902811e-02	ci left: 2.247569e-02	ci right 2.337262e-02	k: 9856	n:430000
KS ci ratio: 1.082647e-01	ci left: 2.874931e-03	ci right 3.206240e-03	k: 1306	n:430000
CXorf58   430000 perm   148 sec   (2900 perm/sec)   p_kst 3.037209e-03   p_cons 2.292093e-02   p_joint 3.037209e-03

Joint ci ratio: 1.070031e-01	ci left: 2.878150e-03	ci right 3.205721e-03	k: 1337	n:440000
Cons ci ratio: 3.857860e-02	ci left: 2.248479e-02	ci right 2.337151e-02	k: 10087	n:440000
KS ci ratio: 1.070031e-01	ci left: 2.878150e-03	ci right 3.205721e-03	k: 1337	n:440000
CXorf58   440000 perm   153 sec   (2867 perm/sec)   p_kst 3.038636e-03   p_cons 2.292500e-02   p_joint 3.038636e-03

Joint ci ratio: 1.060959e-01	ci left: 2.863939e-03	ci right 3.186957e-03	k: 1360	n:450000
Cons ci ratio: 3.821826e-02	ci left: 2.240768e-02	ci right 2.328293e-02	k: 10279	n:450000
KS ci ratio: 1.060959e-01	ci left: 2.863939e-03	ci right 3.186957e-03	k: 1360	n:450000
CXorf58   450000 perm   159 sec   (2837 perm/sec)   p_kst 3.022222e-03   p_cons 2.284222e-02   p_joint 3.022222e-03

Joint ci ratio: 1.046442e-01	ci left: 2.882113e-03	ci right 3.202458e-03	k: 1398	n:460000
Cons ci ratio: 3.776095e-02	ci left: 2.245888e-02	ci right 2.332541e-02	k: 10529	n:460000
KS ci ratio: 1.046442e-01	ci left: 2.882113e-03	ci right 3.202458e-03	k: 1398	n:460000
CXorf58   460000 perm   164 sec   (2805 perm/sec)   p_kst 3.039130e-03   p_cons 2.288913e-02   p_joint 3.039130e-03

Joint ci ratio: 1.037587e-01	ci left: 2.870523e-03	ci right 3.186716e-03	k: 1422	n:470000
Cons ci ratio: 3.735159e-02	ci left: 2.247001e-02	ci right 2.332737e-02	k: 10761	n:470000
KS ci ratio: 1.037587e-01	ci left: 2.870523e-03	ci right 3.186716e-03	k: 1422	n:470000
CXorf58   470000 perm   169 sec   (2775 perm/sec)   p_kst 3.025532e-03   p_cons 2.289574e-02   p_joint 3.025532e-03

Joint ci ratio: 1.026466e-01	ci left: 2.873637e-03	ci right 3.186576e-03	k: 1453	n:480000
Cons ci ratio: 3.694667e-02	ci left: 2.249106e-02	ci right 2.333972e-02	k: 10998	n:480000
KS ci ratio: 1.026466e-01	ci left: 2.873637e-03	ci right 3.186576e-03	k: 1453	n:480000
CXorf58   480000 perm   175 sec   (2745 perm/sec)   p_kst 3.027083e-03   p_cons 2.291250e-02   p_joint 3.027083e-03

Joint ci ratio: 1.015010e-01	ci left: 2.880620e-03	ci right 3.190609e-03	k: 1486	n:490000
Cons ci ratio: 3.656630e-02	ci left: 2.249713e-02	ci right 2.333709e-02	k: 11228	n:490000
KS ci ratio: 1.015010e-01	ci left: 2.880620e-03	ci right 3.190609e-03	k: 1486	n:490000
CXorf58   490000 perm   180 sec   (2717 perm/sec)   p_kst 3.032653e-03   p_cons 2.291429e-02   p_joint 3.032653e-03

Joint ci ratio: 1.000632e-01	ci left: 2.906842e-03	ci right 3.214961e-03	k: 1529	n:500000
Cons ci ratio: 3.621037e-02	ci left: 2.248715e-02	ci right 2.331840e-02	k: 11450	n:500000
KS ci ratio: 1.000632e-01	ci left: 2.906842e-03	ci right 3.214961e-03	k: 1529	n:500000
CXorf58   500000 perm   186 sec   (2688 perm/sec)   p_kst 3.058000e-03   p_cons 2.290000e-02   p_joint 3.058000e-03

Joint ci ratio: 9.928816e-02	ci left: 2.895730e-03	ci right 3.200155e-03	k: 1553	n:510000
Cons ci ratio: 3.582540e-02	ci left: 2.252618e-02	ci right 2.334984e-02	k: 11697	n:510000
KS ci ratio: 9.928816e-02	ci left: 2.895730e-03	ci right 3.200155e-03	k: 1553	n:510000
CXorf58   510000 perm   192 sec   (2660 perm/sec)   p_kst 3.045098e-03   p_cons 2.293529e-02   p_joint 3.045098e-03

Outputting figure to mutsig2_images.part000000000045/CXorf58.2_1031_510000_0.0030451_0.022935_0.0030451.png
                gene_name: CXorf58
               theta_stop: 0.099 
                    nperm: 510000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.0030 
     ci_joint_bounds_left: 0.0029 
    ci_joint_bounds_right: 0.0032 

Current progress: 98 percent done.
CXorf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
Cons ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
KS ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
CXorf61   10000 perm   1 sec   (6953 perm/sec)   p_kst 2.737000e-01   p_cons 8.555000e-01   p_joint 4.448000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf61.2_350_10000_0.2737_0.8555_0.4448.png
                gene_name: CXorf61
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000045
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 45 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 4421861: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000046> was used as the working directory.
Started at Wed Oct 24 17:37:54 2012
Results reported at Wed Oct 24 19:58:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000046.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000046.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 46  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000046.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8499.12 sec.
    Max Memory :      5430 MB
    Max Swap   :      7823 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
46
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 46
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 46: processing genes 4072 - 4162
Calculating significance of each gene.
Using projection method.
4072	CYB561	1
4073	CYB561D1	1
4074	CYB561D2	1
4075	CYB5A	6.299883e-01
4076	CYB5B	2.581221e-01
4077	CYB5D1	7.499265e-01
4078	CYB5D2	1
4079	CYB5R1	6.163010e-01
4080	CYB5R2	3.402795e-01
4081	CYB5R3	1
4082	CYB5R4	6.849493e-02
4083	CYB5RL	7.145239e-01
4084	CYBA	1
4085	CYBASC3	5.707675e-01
4086	CYBB	8.892726e-01
4087	CYBRD1	8.458287e-01
4088	CYC1	5.374444e-01
4089	CYCS	1
4090	CYFIP1	8.091243e-01
4091	CYFIP2	7.085786e-01
4092	CYGB	1
4093	CYHR1	5.871343e-01
4094	CYLC1	5.009946e-03
4095	CYLC2	2.878758e-03
4096	CYLD	7.230077e-01
4097	CYP11A1	9.530093e-01
4098	CYP11B1	9.497400e-01
4099	CYP11B2	1
4100	CYP17A1	9.140234e-01
4101	CYP19A1	4.753448e-01
4102	CYP1A1	1.029959e-01
4103	CYP1A2	9.697614e-01
4104	CYP1B1	6.839061e-01
4105	CYP20A1	3.101462e-01
4106	CYP21A2	9.420414e-01
4107	CYP24A1	2.943652e-01
4108	CYP26A1	3.749501e-01
4109	CYP26B1	2.028948e-02
4110	CYP26C1	7.098064e-01
4111	CYP27A1	5.165741e-01
4112	CYP27B1	9.140326e-01
4113	CYP27C1	6.432563e-01
4114	CYP2A13	3.240382e-01
4115	CYP2A6	3.701430e-01
4116	CYP2A7	7.362007e-01
4117	CYP2B6	8.256515e-02
4118	CYP2C18	4.430934e-01
4119	CYP2C19	2.975081e-03
4120	CYP2C8	1
4121	CYP2C9	1
4122	CYP2D6	1
4123	CYP2E1	7.623041e-01
4124	CYP2F1	7.526189e-01
4125	CYP2J2	8.908003e-01
4126	CYP2R1	1
4127	CYP2S1	7.964092e-01
4128	CYP2U1	8.704247e-01
4129	CYP2W1	4.879203e-01
4130	CYP39A1	7.400997e-01
4131	CYP3A4	1
4132	CYP3A43	1
4133	CYP3A5	1
4134	CYP3A7	9.010222e-01
4135	CYP46A1	1.208296e-01
4136	CYP4A11	4.085934e-01
4137	CYP4A22	1
4138	CYP4B1	1.611014e-01
4139	CYP4F11	1
4140	CYP4F12	6.880250e-03
4141	CYP4F2	2.861775e-01
4142	CYP4F22	8.349563e-01
In gene CYP4F3 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1611    n = 1	mu =   7.03e-07
4143	CYP4F3	7.327577e-03
4144	CYP4F8	7.601570e-01
4145	CYP4V2	4.508978e-04
4146	CYP4X1	7.761196e-01
4147	CYP4Z1	3.429669e-01
4148	CYP51A1	8.125748e-01
4149	CYP7A1	7.852212e-01
4150	CYP7B1	1.112527e-01
4151	CYP8B1	1
4152	CYR61	8.219943e-01
4153	CYSLTR1	7.934941e-01
4154	CYSLTR2	7.664470e-02
4155	CYTH1	5.429263e-01
4156	CYTH2	4.968046e-01
4157	CYTH3	7.486593e-01
4158	CYTH4	6.291160e-01
4159	CYTIP	1.684462e-01
4160	CYTL1	5.833961e-01
4161	CYTSA	9.710824e-01
4162	CYTSB	9.912732e-01
Done

Running MutSig 2:
Scatter job 46: processing genes 4072 - 4162
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CYP4F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.534585e-02	ci left: 5.416885e-01	ci right 5.612815e-01	k: 5515	n:10000
Cons ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
KS ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
CYP4F3   10000 perm   2 sec   (4424 perm/sec)   p_kst 3.627000e-01   p_cons 9.407000e-01   p_joint 5.515000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F3.12_1611_10000_0.3627_0.9407_0.5515.png
                gene_name: CYP4F3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 2 percent done.
CYP11B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
Cons ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
KS ci ratio: 3.091423e-02	ci left: 6.068871e-01	ci right 6.260450e-01	k: 6165	n:10000
CYP11B1   10000 perm   2 sec   (5098 perm/sec)   p_kst 6.165000e-01   p_cons 2.580000e-02   p_joint 1.268000e-01

Joint ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
Cons ci ratio: 1.598212e-01	ci left: 2.686219e-02	ci right 3.157601e-02	k: 583	n:20000
KS ci ratio: 2.229532e-02	ci left: 6.003413e-01	ci right 6.139275e-01	k: 12143	n:20000
CYP11B1   20000 perm   4 sec   (4641 perm/sec)   p_kst 6.071500e-01   p_cons 2.915000e-02   p_joint 9.565000e-02

Joint ci ratio: 6.645270e-02	ci left: 1.004690e-01	ci right 1.074079e-01	k: 3117	n:30000
Cons ci ratio: 1.275976e-01	ci left: 2.855075e-02	ci right 3.247421e-02	k: 914	n:30000
KS ci ratio: 1.820246e-02	ci left: 6.016468e-01	ci right 6.127324e-01	k: 18216	n:30000
CYP11B1   30000 perm   7 sec   (4494 perm/sec)   p_kst 6.072000e-01   p_cons 3.046667e-02   p_joint 1.039000e-01

Joint ci ratio: 5.474920e-02	ci left: 1.104812e-01	ci right 1.167250e-01	k: 4543	n:40000
Cons ci ratio: 1.109260e-01	ci left: 2.859321e-02	ci right 3.197544e-02	k: 1210	n:40000
KS ci ratio: 1.589975e-02	ci left: 5.982855e-01	ci right 6.078995e-01	k: 24124	n:40000
CYP11B1   40000 perm   9 sec   (4385 perm/sec)   p_kst 6.031000e-01   p_cons 3.025000e-02   p_joint 1.135750e-01

Joint ci ratio: 5.525942e-02	ci left: 8.890758e-02	ci right 9.397996e-02	k: 4571	n:50000
Cons ci ratio: 9.893775e-02	ci left: 2.893197e-02	ci right 3.196287e-02	k: 1521	n:50000
KS ci ratio: 1.421174e-02	ci left: 5.991163e-01	ci right 6.077117e-01	k: 30171	n:50000
CYP11B1   50000 perm   12 sec   (4290 perm/sec)   p_kst 6.034200e-01   p_cons 3.042000e-02   p_joint 9.142000e-02

Outputting figure to mutsig2_images.part000000000046/CYP11B1.10_1548_50000_0.60342_0.03042_0.09142.png
                gene_name: CYP11B1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 3 percent done.
CYP4V2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
Cons ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
KS ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
CYP4V2   10000 perm   2 sec   (4801 perm/sec)   p_kst 2.612000e-01   p_cons 3.980000e-02   p_joint 5.140000e-02

Joint ci ratio: 1.081846e-01	ci left: 5.825809e-02	ci right 6.497006e-02	k: 1231	n:20000
Cons ci ratio: 1.390823e-01	ci left: 3.553751e-02	ci right 4.089781e-02	k: 763	n:20000
KS ci ratio: 4.683545e-02	ci left: 2.532862e-01	ci right 2.654838e-01	k: 5187	n:20000
CYP4V2   20000 perm   5 sec   (4395 perm/sec)   p_kst 2.593500e-01   p_cons 3.815000e-02   p_joint 6.155000e-02

Joint ci ratio: 7.839325e-02	ci left: 7.390949e-02	ci right 7.997274e-02	k: 2307	n:30000
Cons ci ratio: 1.150836e-01	ci left: 3.508671e-02	ci right 3.940351e-02	k: 1116	n:30000
KS ci ratio: 3.854534e-02	ci left: 2.513999e-01	ci right 2.613140e-01	k: 7690	n:30000
CYP4V2   30000 perm   7 sec   (4177 perm/sec)   p_kst 2.563333e-01   p_cons 3.720000e-02   p_joint 7.690000e-02

Joint ci ratio: 6.197406e-02	ci left: 8.810014e-02	ci right 9.375940e-02	k: 3636	n:40000
Cons ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
KS ci ratio: 3.334339e-02	ci left: 2.524992e-01	ci right 2.610862e-01	k: 10271	n:40000
CYP4V2   40000 perm   10 sec   (4063 perm/sec)   p_kst 2.567750e-01   p_cons 3.652500e-02   p_joint 9.090000e-02

Joint ci ratio: 6.755061e-02	ci left: 6.096452e-02	ci right 6.524637e-02	k: 3154	n:50000
Cons ci ratio: 9.042984e-02	ci left: 3.457974e-02	ci right 3.787439e-02	k: 1810	n:50000
KS ci ratio: 2.995351e-02	ci left: 2.513033e-01	ci right 2.589652e-01	k: 12756	n:50000
CYP4V2   50000 perm   13 sec   (3955 perm/sec)   p_kst 2.551200e-01   p_cons 3.620000e-02   p_joint 6.308000e-02

Outputting figure to mutsig2_images.part000000000046/CYP4V2.10_1622_50000_0.25512_0.0362_0.06308.png
                gene_name: CYP4V2
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 5 percent done.
CYLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
Cons ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
KS ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
CYLC1   10000 perm   2 sec   (5570 perm/sec)   p_kst 1.870000e-02   p_cons 2.054000e-01   p_joint 3.650000e-02

Joint ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
Cons ci ratio: 5.572395e-02	ci left: 1.927933e-01	ci right 2.038946e-01	k: 3966	n:20000
KS ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
CYLC1   20000 perm   4 sec   (4857 perm/sec)   p_kst 2.085000e-02   p_cons 1.983000e-01   p_joint 3.090000e-02

Joint ci ratio: 1.131001e-01	ci left: 3.631853e-02	ci right 4.070476e-02	k: 1154	n:30000
Cons ci ratio: 4.385645e-02	ci left: 2.056670e-01	ci right 2.149225e-01	k: 6308	n:30000
KS ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
CYLC1   30000 perm   7 sec   (4597 perm/sec)   p_kst 2.083333e-02   p_cons 2.102667e-01   p_joint 3.846667e-02

Joint ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
Cons ci ratio: 3.784419e-02	ci left: 2.074818e-01	ci right 2.155102e-01	k: 8459	n:40000
KS ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
CYLC1   40000 perm   9 sec   (4468 perm/sec)   p_kst 1.942500e-02   p_cons 2.114750e-01   p_joint 2.287500e-02

Joint ci ratio: 1.201641e-01	ci left: 1.958637e-02	ci right 2.210969e-02	k: 1041	n:50000
Cons ci ratio: 3.387735e-02	ci left: 2.076292e-01	ci right 2.148043e-01	k: 10560	n:50000
KS ci ratio: 1.245047e-01	ci left: 1.822840e-02	ci right 2.066785e-02	k: 971	n:50000
CYLC1   50000 perm   12 sec   (4237 perm/sec)   p_kst 1.942000e-02   p_cons 2.112000e-01   p_joint 2.082000e-02

Joint ci ratio: 8.994740e-02	ci left: 2.930151e-02	ci right 3.207747e-02	k: 1840	n:60000
Cons ci ratio: 3.209515e-02	ci left: 1.959111e-01	ci right 2.023180e-01	k: 11946	n:60000
KS ci ratio: 1.125983e-01	ci left: 1.868402e-02	ci right 2.092943e-02	k: 1187	n:60000
CYLC1   60000 perm   14 sec   (4173 perm/sec)   p_kst 1.978333e-02   p_cons 1.991000e-01   p_joint 3.066667e-02

Joint ci ratio: 8.891819e-02	ci left: 2.581179e-02	ci right 2.822764e-02	k: 1890	n:70000
Cons ci ratio: 2.973989e-02	ci left: 1.958773e-01	ci right 2.018048e-01	k: 13918	n:70000
KS ci ratio: 1.046316e-01	ci left: 1.862766e-02	ci right 2.069814e-02	k: 1375	n:70000
CYLC1   70000 perm   17 sec   (4114 perm/sec)   p_kst 1.964286e-02   p_cons 1.988286e-01   p_joint 2.700000e-02

Joint ci ratio: 9.710741e-02	ci left: 1.899224e-02	ci right 2.094279e-02	k: 1596	n:80000
Cons ci ratio: 2.778363e-02	ci left: 1.964744e-01	ci right 2.020225e-01	k: 15939	n:80000
KS ci ratio: 9.757602e-02	ci left: 1.880922e-02	ci right 2.075082e-02	k: 1581	n:80000
CYLC1   80000 perm   20 sec   (4042 perm/sec)   p_kst 1.976250e-02   p_cons 1.992375e-01   p_joint 1.995000e-02

Outputting figure to mutsig2_images.part000000000046/CYLC1.9_1976_80000_0.019762_0.19924_0.01995.png
                gene_name: CYLC1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 6 percent done.
CYP2C19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
KS ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
CYP2C19   10000 perm   2 sec   (5069 perm/sec)   p_kst 6.451000e-01   p_cons 9.600000e-03   p_joint 3.010000e-02

Joint ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
Cons ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
KS ci ratio: 2.075194e-02	ci left: 6.341058e-01	ci right 6.474532e-01	k: 12816	n:20000
CYP2C19   20000 perm   4 sec   (4611 perm/sec)   p_kst 6.408000e-01   p_cons 9.150000e-03   p_joint 3.125000e-02

Joint ci ratio: 1.252860e-01	ci left: 2.961697e-02	ci right 3.360776e-02	k: 947	n:30000
Cons ci ratio: 2.383763e-01	ci left: 7.868329e-03	ci right 1.002838e-02	k: 267	n:30000
KS ci ratio: 1.684856e-02	ci left: 6.379494e-01	ci right 6.488228e-01	k: 19302	n:30000
CYP2C19   30000 perm   7 sec   (4394 perm/sec)   p_kst 6.434000e-01   p_cons 8.900000e-03   p_joint 3.156667e-02

Joint ci ratio: 1.173246e-01	ci left: 2.555494e-02	ci right 2.876420e-02	k: 1085	n:40000
Cons ci ratio: 2.080128e-01	ci left: 7.884339e-03	ci right 9.738027e-03	k: 351	n:40000
KS ci ratio: 1.461047e-02	ci left: 6.380814e-01	ci right 6.474978e-01	k: 25712	n:40000
CYP2C19   40000 perm   9 sec   (4241 perm/sec)   p_kst 6.428000e-01   p_cons 8.775000e-03   p_joint 2.712500e-02

Joint ci ratio: 8.010903e-02	ci left: 4.386633e-02	ci right 4.754665e-02	k: 2284	n:50000
Cons ci ratio: 1.776867e-01	ci left: 8.783002e-03	ci right 1.051464e-02	k: 481	n:50000
KS ci ratio: 1.304531e-02	ci left: 6.393838e-01	ci right 6.477995e-01	k: 32180	n:50000
CYP2C19   50000 perm   12 sec   (4116 perm/sec)   p_kst 6.436000e-01   p_cons 9.620000e-03   p_joint 4.568000e-02

Joint ci ratio: 8.216332e-02	ci left: 3.504626e-02	ci right 3.806544e-02	k: 2192	n:60000
Cons ci ratio: 1.645776e-01	ci left: 8.595387e-03	ci right 1.015262e-02	k: 561	n:60000
KS ci ratio: 1.193945e-02	ci left: 6.385665e-01	ci right 6.462531e-01	k: 38545	n:60000
CYP2C19   60000 perm   15 sec   (4039 perm/sec)   p_kst 6.424167e-01   p_cons 9.350000e-03   p_joint 3.653333e-02

Joint ci ratio: 8.460163e-02	ci left: 2.849679e-02	ci right 3.102810e-02	k: 2082	n:70000
Cons ci ratio: 1.509429e-01	ci left: 8.822145e-03	ci right 1.027609e-02	k: 667	n:70000
KS ci ratio: 1.103978e-02	ci left: 6.394377e-01	ci right 6.465504e-01	k: 45010	n:70000
CYP2C19   70000 perm   18 sec   (3963 perm/sec)   p_kst 6.430000e-01   p_cons 9.528571e-03   p_joint 2.974286e-02

Joint ci ratio: 5.507642e-02	ci left: 5.790753e-02	ci right 6.119950e-02	k: 4763	n:80000
Cons ci ratio: 1.374641e-01	ci left: 9.370380e-03	ci right 1.076549e-02	k: 804	n:80000
KS ci ratio: 1.033212e-02	ci left: 6.394306e-01	ci right 6.460841e-01	k: 51421	n:80000
CYP2C19   80000 perm   21 sec   (3879 perm/sec)   p_kst 6.427625e-01   p_cons 1.005000e-02   p_joint 5.953750e-02

Joint ci ratio: 5.347415e-02	ci left: 5.483577e-02	ci right 5.785957e-02	k: 5070	n:90000
Cons ci ratio: 1.305247e-01	ci left: 9.274209e-03	ci right 1.057989e-02	k: 892	n:90000
KS ci ratio: 9.751043e-03	ci left: 6.391584e-01	ci right 6.454324e-01	k: 57807	n:90000
CYP2C19   90000 perm   24 sec   (3813 perm/sec)   p_kst 6.423000e-01   p_cons 9.911111e-03   p_joint 5.633333e-02

Joint ci ratio: 5.281574e-02	ci left: 5.082939e-02	ci right 5.359665e-02	k: 5220	n:100000
Cons ci ratio: 1.237777e-01	ci left: 9.315005e-03	ci right 1.055367e-02	k: 992	n:100000
KS ci ratio: 9.259319e-03	ci left: 6.388893e-01	ci right 6.448425e-01	k: 64187	n:100000
CYP2C19   100000 perm   27 sec   (3757 perm/sec)   p_kst 6.418700e-01   p_cons 9.920000e-03   p_joint 5.220000e-02

Joint ci ratio: 4.947380e-02	ci left: 5.265360e-02	ci right 5.533361e-02	k: 5938	n:110000
Cons ci ratio: 1.181979e-01	ci left: 9.314508e-03	ci right 1.049337e-02	k: 1088	n:110000
KS ci ratio: 8.827496e-03	ci left: 6.390767e-01	ci right 6.447522e-01	k: 70611	n:110000
CYP2C19   110000 perm   30 sec   (3690 perm/sec)   p_kst 6.419182e-01   p_cons 9.890909e-03   p_joint 5.398182e-02

Joint ci ratio: 4.862562e-02	ci left: 5.012440e-02	ci right 5.263067e-02	k: 6164	n:120000
Cons ci ratio: 1.125930e-01	ci left: 9.436641e-03	ci right 1.057056e-02	k: 1199	n:120000
KS ci ratio: 8.454782e-03	ci left: 6.390295e-01	ci right 6.444636e-01	k: 77010	n:120000
CYP2C19   120000 perm   33 sec   (3627 perm/sec)   p_kst 6.417500e-01   p_cons 9.991667e-03   p_joint 5.136667e-02

Joint ci ratio: 4.510591e-02	ci left: 5.366786e-02	ci right 5.615204e-02	k: 7137	n:130000
Cons ci ratio: 1.086411e-01	ci left: 9.376405e-03	ci right 1.046101e-02	k: 1288	n:130000
KS ci ratio: 8.124115e-03	ci left: 6.390788e-01	ci right 6.442995e-01	k: 83420	n:130000
CYP2C19   130000 perm   36 sec   (3569 perm/sec)   p_kst 6.416923e-01   p_cons 9.907692e-03   p_joint 5.490000e-02

Joint ci ratio: 4.545158e-02	ci left: 4.930218e-02	ci right 5.160220e-02	k: 7062	n:140000
Cons ci ratio: 1.046570e-01	ci left: 9.401903e-03	ci right 1.044712e-02	k: 1388	n:140000
KS ci ratio: 7.824576e-03	ci left: 6.394107e-01	ci right 6.444406e-01	k: 89870	n:140000
CYP2C19   140000 perm   40 sec   (3512 perm/sec)   p_kst 6.419286e-01   p_cons 9.914286e-03   p_joint 5.044286e-02

Joint ci ratio: 4.484336e-02	ci left: 4.738530e-02	ci right 4.956553e-02	k: 7270	n:150000
Cons ci ratio: 1.011843e-01	ci left: 9.405132e-03	ci right 1.041395e-02	k: 1485	n:150000
KS ci ratio: 7.546472e-03	ci left: 6.402755e-01	ci right 6.451323e-01	k: 96406	n:150000
CYP2C19   150000 perm   43 sec   (3461 perm/sec)   p_kst 6.427067e-01   p_cons 9.900000e-03   p_joint 4.846667e-02

Joint ci ratio: 4.317638e-02	ci left: 4.793495e-02	ci right 5.005643e-02	k: 7838	n:160000
Cons ci ratio: 9.803591e-02	ci left: 9.408460e-03	ci right 1.038442e-02	k: 1582	n:160000
KS ci ratio: 7.301978e-03	ci left: 6.406592e-01	ci right 6.453606e-01	k: 102882	n:160000
CYP2C19   160000 perm   47 sec   (3404 perm/sec)   p_kst 6.430125e-01   p_cons 9.887500e-03   p_joint 4.898750e-02

Outputting figure to mutsig2_images.part000000000046/CYP2C19.9_1508_160000_0.64301_0.0098875_0.048988.png
                gene_name: CYP2C19
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0094 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 8 percent done.
CYP4F12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
KS ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
CYP4F12   10000 perm   2 sec   (4710 perm/sec)   p_kst 6.770000e-01   p_cons 8.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP4F12.9_1623_10000_0.677_0.8617_1.png
                gene_name: CYP4F12
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
CYFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
Cons ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
KS ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
CYFIP2   10000 perm   2 sec   (4609 perm/sec)   p_kst 1.659000e-01   p_cons 5.943000e-01   p_joint 1.991000e-01

Outputting figure to mutsig2_images.part000000000046/CYFIP2.8_3882_10000_0.1659_0.5943_0.1991.png
                gene_name: CYFIP2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
CYP26B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
CYP26B1   10000 perm   2 sec   (4579 perm/sec)   p_kst 1.258000e-01   p_cons 4.056000e-01   p_joint 1.622000e-01

Joint ci ratio: 6.328675e-02	ci left: 1.558322e-01	ci right 1.660666e-01	k: 3218	n:20000
Cons ci ratio: 3.385671e-02	ci left: 3.944467e-01	ci right 4.080820e-01	k: 8025	n:20000
KS ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
CYP26B1   20000 perm   5 sec   (4402 perm/sec)   p_kst 1.198500e-01   p_cons 4.012500e-01   p_joint 1.609000e-01

Outputting figure to mutsig2_images.part000000000046/CYP26B1.8_1563_20000_0.11985_0.40125_0.1609.png
                gene_name: CYP26B1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 13 percent done.
CYP2B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
Cons ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
KS ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
CYP2B6   10000 perm   2 sec   (5242 perm/sec)   p_kst 6.303000e-01   p_cons 9.488000e-01   p_joint 7.877000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2B6.8_1512_10000_0.6303_0.9488_0.7877.png
                gene_name: CYP2B6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 14 percent done.
CYP2J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
Cons ci ratio: 7.745522e-02	ci left: 1.959420e-01	ci right 2.118309e-01	k: 2038	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
CYP2J2   10000 perm   2 sec   (4953 perm/sec)   p_kst 6.000000e-04   p_cons 2.038000e-01   p_joint 1.700000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 5.513513e-02	ci left: 1.961575e-01	ci right 2.073294e-01	k: 4034	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
CYP2J2   20000 perm   4 sec   (4732 perm/sec)   p_kst 5.500000e-04   p_cons 2.017000e-01   p_joint 6.750000e-03

Joint ci ratio: 2.954537e-01	ci left: 4.972185e-03	ci right 6.725594e-03	k: 174	n:30000
Cons ci ratio: 4.520268e-02	ci left: 1.958828e-01	ci right 2.049753e-01	k: 6012	n:30000
KS ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
CYP2J2   30000 perm   7 sec   (4578 perm/sec)   p_kst 5.333333e-04   p_cons 2.004000e-01   p_joint 5.800000e-03

Joint ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
Cons ci ratio: 3.887505e-02	ci left: 1.987199e-01	ci right 2.066233e-01	k: 8106	n:40000
KS ci ratio: 8.551789e-01	ci left: 3.054389e-04	ci right 7.721043e-04	k: 20	n:40000
CYP2J2   40000 perm   9 sec   (4489 perm/sec)   p_kst 5.000000e-04   p_cons 2.026500e-01   p_joint 3.275000e-03

Joint ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
Cons ci ratio: 3.478117e-02	ci left: 1.990445e-01	ci right 2.061100e-01	k: 10128	n:50000
KS ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
CYP2J2   50000 perm   11 sec   (4436 perm/sec)   p_kst 4.800000e-04   p_cons 2.025600e-01   p_joint 2.900000e-03

Joint ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
Cons ci ratio: 3.173569e-02	ci left: 1.995060e-01	ci right 2.059561e-01	k: 12163	n:60000
KS ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
CYP2J2   60000 perm   14 sec   (4370 perm/sec)   p_kst 4.500000e-04   p_cons 2.027167e-01   p_joint 2.166667e-03

Joint ci ratio: 3.345779e-01	ci left: 1.630307e-03	ci right 2.297774e-03	k: 136	n:70000
Cons ci ratio: 2.942360e-02	ci left: 1.992867e-01	ci right 2.052523e-01	k: 14158	n:70000
KS ci ratio: 6.928013e-01	ci left: 3.009192e-04	ci right 6.285420e-04	k: 31	n:70000
CYP2J2   70000 perm   16 sec   (4297 perm/sec)   p_kst 4.428571e-04   p_cons 2.022571e-01   p_joint 1.942857e-03

Joint ci ratio: 3.422093e-01	ci left: 1.357856e-03	ci right 1.929262e-03	k: 130	n:80000
Cons ci ratio: 2.749422e-02	ci left: 1.998193e-01	ci right 2.054022e-01	k: 16208	n:80000
KS ci ratio: 6.442910e-01	ci left: 3.151937e-04	ci right 6.229358e-04	k: 36	n:80000
CYP2J2   80000 perm   19 sec   (4197 perm/sec)   p_kst 4.500000e-04   p_cons 2.026000e-01   p_joint 1.625000e-03

Joint ci ratio: 3.409400e-01	ci left: 1.217125e-03	ci right 1.726987e-03	k: 131	n:90000
Cons ci ratio: 2.596657e-02	ci left: 1.994253e-01	ci right 2.046828e-01	k: 18184	n:90000
KS ci ratio: 6.047246e-01	ci left: 3.269337e-04	ci right 6.179623e-04	k: 41	n:90000
CYP2J2   90000 perm   22 sec   (4115 perm/sec)   p_kst 4.555556e-04   p_cons 2.020444e-01   p_joint 1.455556e-03

Joint ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
Cons ci ratio: 2.464289e-02	ci left: 1.994456e-01	ci right 2.044317e-01	k: 20193	n:100000
KS ci ratio: 5.908293e-01	ci left: 3.112101e-04	ci right 5.791640e-04	k: 43	n:100000
CYP2J2   100000 perm   25 sec   (4048 perm/sec)   p_kst 4.300000e-04   p_cons 2.019300e-01   p_joint 1.330000e-03

Joint ci ratio: 3.230986e-01	ci left: 1.120825e-03	ci right 1.560689e-03	k: 146	n:110000
Cons ci ratio: 2.352089e-02	ci left: 1.992234e-01	ci right 2.039741e-01	k: 22175	n:110000
KS ci ratio: 5.656772e-01	ci left: 3.139603e-04	ci right 5.681421e-04	k: 47	n:110000
CYP2J2   110000 perm   28 sec   (3976 perm/sec)   p_kst 4.272727e-04   p_cons 2.015909e-01   p_joint 1.327273e-03

Joint ci ratio: 3.106689e-01	ci left: 1.119473e-03	ci right 1.538557e-03	k: 158	n:120000
Cons ci ratio: 2.254873e-02	ci left: 1.989099e-01	ci right 2.034545e-01	k: 24141	n:120000
KS ci ratio: 5.542539e-01	ci left: 3.021020e-04	ci right 5.398028e-04	k: 49	n:120000
CYP2J2   120000 perm   31 sec   (3894 perm/sec)   p_kst 4.083333e-04   p_cons 2.011750e-01   p_joint 1.316667e-03

Joint ci ratio: 3.372034e-01	ci left: 8.637093e-04	ci right 1.220689e-03	k: 134	n:130000
Cons ci ratio: 2.167649e-02	ci left: 1.988167e-01	ci right 2.031812e-01	k: 26129	n:130000
KS ci ratio: 5.237172e-01	ci left: 3.187348e-04	ci right 5.506576e-04	k: 55	n:130000
CYP2J2   130000 perm   34 sec   (3832 perm/sec)   p_kst 4.230769e-04   p_cons 2.009923e-01   p_joint 1.030769e-03

Joint ci ratio: 3.276382e-01	ci left: 8.543897e-04	ci right 1.195392e-03	k: 142	n:140000
Cons ci ratio: 2.089357e-02	ci left: 1.988109e-01	ci right 2.030157e-01	k: 28127	n:140000
KS ci ratio: 5.059596e-01	ci left: 3.208260e-04	ci right 5.435789e-04	k: 59	n:140000
CYP2J2   140000 perm   37 sec   (3781 perm/sec)   p_kst 4.214286e-04   p_cons 2.009071e-01   p_joint 1.014286e-03

Joint ci ratio: 3.231566e-01	ci left: 8.219166e-04	ci right 1.144541e-03	k: 146	n:150000
Cons ci ratio: 2.018642e-02	ci left: 1.988615e-01	ci right 2.029234e-01	k: 30133	n:150000
KS ci ratio: 4.898938e-01	ci left: 3.227542e-04	ci right 5.373309e-04	k: 63	n:150000
CYP2J2   150000 perm   40 sec   (3726 perm/sec)   p_kst 4.200000e-04   p_cons 2.008867e-01   p_joint 9.733333e-04

Joint ci ratio: 2.035547e-01	ci left: 2.077146e-03	ci right 2.553675e-03	k: 369	n:160000
Cons ci ratio: 1.953095e-02	ci left: 1.991632e-01	ci right 2.030976e-01	k: 32180	n:160000
KS ci ratio: 4.618710e-01	ci left: 3.465882e-04	ci right 5.596978e-04	k: 71	n:160000
CYP2J2   160000 perm   44 sec   (3666 perm/sec)   p_kst 4.437500e-04   p_cons 2.011250e-01   p_joint 2.306250e-03

Joint ci ratio: 1.990373e-01	ci left: 2.049918e-03	ci right 2.508497e-03	k: 386	n:170000
Cons ci ratio: 1.893855e-02	ci left: 1.993785e-01	ci right 2.031964e-01	k: 34218	n:170000
KS ci ratio: 4.495530e-01	ci left: 3.470286e-04	ci right 5.529876e-04	k: 75	n:170000
CYP2J2   170000 perm   47 sec   (3609 perm/sec)   p_kst 4.411765e-04   p_cons 2.012824e-01   p_joint 2.270588e-03

Joint ci ratio: 1.938483e-01	ci left: 2.046962e-03	ci right 2.491534e-03	k: 407	n:180000
Cons ci ratio: 1.839794e-02	ci left: 1.995549e-01	ci right 2.032659e-01	k: 36253	n:180000
KS ci ratio: 4.409364e-01	ci left: 3.425466e-04	ci right 5.407905e-04	k: 78	n:180000
CYP2J2   180000 perm   51 sec   (3553 perm/sec)   p_kst 4.333333e-04   p_cons 2.014056e-01   p_joint 2.261111e-03

Joint ci ratio: 1.899346e-01	ci left: 2.024401e-03	ci right 2.454170e-03	k: 424	n:190000
Cons ci ratio: 1.790229e-02	ci left: 1.996931e-01	ci right 2.033055e-01	k: 38284	n:190000
KS ci ratio: 4.354616e-01	ci left: 3.338822e-04	ci right 5.240095e-04	k: 80	n:190000
CYP2J2   190000 perm   54 sec   (3500 perm/sec)   p_kst 4.210526e-04   p_cons 2.014947e-01   p_joint 2.231579e-03

Joint ci ratio: 1.890558e-01	ci left: 1.942224e-03	ci right 2.352420e-03	k: 428	n:200000
Cons ci ratio: 1.744873e-02	ci left: 1.997439e-01	ci right 2.032648e-01	k: 40300	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
CYP2J2   200000 perm   58 sec   (3457 perm/sec)   p_kst 4.300000e-04   p_cons 2.015000e-01   p_joint 2.140000e-03

Joint ci ratio: 1.856284e-01	ci left: 1.922352e-03	ci right 2.320162e-03	k: 444	n:210000
Cons ci ratio: 1.703781e-02	ci left: 1.996058e-01	ci right 2.030406e-01	k: 42277	n:210000
KS ci ratio: 4.063941e-01	ci left: 3.531808e-04	ci right 5.372583e-04	k: 92	n:210000
CYP2J2   210000 perm   61 sec   (3415 perm/sec)   p_kst 4.380952e-04   p_cons 2.013190e-01   p_joint 2.114286e-03

Joint ci ratio: 2.022549e-01	ci left: 1.532180e-03	ci right 1.881160e-03	k: 374	n:220000
Cons ci ratio: 1.665155e-02	ci left: 1.995401e-01	ci right 2.028951e-01	k: 44267	n:220000
KS ci ratio: 3.979270e-01	ci left: 3.534698e-04	ci right 5.328490e-04	k: 96	n:220000
CYP2J2   220000 perm   65 sec   (3366 perm/sec)   p_kst 4.363636e-04   p_cons 2.012136e-01   p_joint 1.700000e-03

Joint ci ratio: 1.988395e-01	ci left: 1.519246e-03	ci right 1.858728e-03	k: 387	n:230000
Cons ci ratio: 1.629175e-02	ci left: 1.994548e-01	ci right 2.027353e-01	k: 46251	n:230000
KS ci ratio: 3.919139e-01	ci left: 3.498495e-04	ci right 5.240144e-04	k: 99	n:230000
CYP2J2   230000 perm   69 sec   (3320 perm/sec)   p_kst 4.304348e-04   p_cons 2.010913e-01   p_joint 1.682609e-03

Joint ci ratio: 1.951047e-01	ci left: 1.515361e-03	ci right 1.846860e-03	k: 402	n:240000
Cons ci ratio: 1.596031e-02	ci left: 1.992570e-01	ci right 2.024669e-01	k: 48206	n:240000
KS ci ratio: 3.843035e-01	ci left: 3.503128e-04	ci right 5.204656e-04	k: 103	n:240000
CYP2J2   240000 perm   73 sec   (3277 perm/sec)   p_kst 4.291667e-04   p_cons 2.008583e-01   p_joint 1.675000e-03

Joint ci ratio: 1.970803e-01	ci left: 1.424311e-03	ci right 1.739425e-03	k: 394	n:250000
Cons ci ratio: 1.563544e-02	ci left: 1.993388e-01	ci right 2.024841e-01	k: 50227	n:250000
KS ci ratio: 3.824717e-01	ci left: 3.399144e-04	ci right 5.040314e-04	k: 104	n:250000
CYP2J2   250000 perm   77 sec   (3232 perm/sec)   p_kst 4.160000e-04   p_cons 2.009080e-01   p_joint 1.576000e-03

Joint ci ratio: 1.927370e-01	ci left: 1.435383e-03	ci right 1.745128e-03	k: 412	n:260000
Cons ci ratio: 1.533385e-02	ci left: 1.993268e-01	ci right 2.024106e-01	k: 52225	n:260000
KS ci ratio: 3.703247e-01	ci left: 3.512177e-04	ci right 5.141031e-04	k: 111	n:260000
CYP2J2   260000 perm   81 sec   (3191 perm/sec)   p_kst 4.269231e-04   p_cons 2.008654e-01   p_joint 1.584615e-03

Joint ci ratio: 2.127711e-01	ci left: 1.122007e-03	ci right 1.392585e-03	k: 338	n:270000
Cons ci ratio: 1.506349e-02	ci left: 1.990096e-01	ci right 2.020338e-01	k: 54140	n:270000
KS ci ratio: 3.592659e-01	ci left: 3.617601e-04	ci right 5.233534e-04	k: 118	n:270000
CYP2J2   270000 perm   86 sec   (3151 perm/sec)   p_kst 4.370370e-04   p_cons 2.005185e-01   p_joint 1.251852e-03

Joint ci ratio: 2.097016e-01	ci left: 1.115760e-03	ci right 1.380451e-03	k: 348	n:280000
Cons ci ratio: 1.479226e-02	ci left: 1.990326e-01	ci right 2.020022e-01	k: 56144	n:280000
KS ci ratio: 3.519478e-01	ci left: 3.651023e-04	ci right 5.241078e-04	k: 123	n:280000
CYP2J2   280000 perm   90 sec   (3114 perm/sec)   p_kst 4.392857e-04   p_cons 2.005143e-01   p_joint 1.242857e-03

Joint ci ratio: 2.073403e-01	ci left: 1.103431e-03	ci right 1.361875e-03	k: 356	n:290000
Cons ci ratio: 1.452845e-02	ci left: 1.992023e-01	ci right 2.021210e-01	k: 58191	n:290000
KS ci ratio: 3.464053e-01	ci left: 3.650960e-04	ci right 5.210332e-04	k: 127	n:290000
CYP2J2   290000 perm   94 sec   (3073 perm/sec)   p_kst 4.379310e-04   p_cons 2.006586e-01   p_joint 1.227586e-03

Joint ci ratio: 2.140525e-01	ci left: 9.971786e-04	ci right 1.239291e-03	k: 334	n:300000
Cons ci ratio: 1.518182e-02	ci left: 1.804412e-01	ci right 1.832049e-01	k: 54546	n:300000
KS ci ratio: 3.398312e-01	ci left: 3.681570e-04	ci right 5.217625e-04	k: 132	n:300000
CYP2J2   300000 perm   99 sec   (3035 perm/sec)   p_kst 4.400000e-04   p_cons 1.818200e-01   p_joint 1.113333e-03

Joint ci ratio: 2.109279e-01	ci left: 9.955530e-04	ci right 1.233286e-03	k: 344	n:310000
Cons ci ratio: 1.492867e-02	ci left: 1.805884e-01	ci right 1.833078e-01	k: 56403	n:310000
KS ci ratio: 3.385627e-01	ci left: 3.592317e-04	ci right 5.084315e-04	k: 133	n:310000
CYP2J2   310000 perm   103 sec   (2997 perm/sec)   p_kst 4.290323e-04   p_cons 1.819452e-01   p_joint 1.109677e-03

Joint ci ratio: 2.076437e-01	ci left: 9.970155e-04	ci right 1.230920e-03	k: 355	n:320000
Cons ci ratio: 1.468531e-02	ci left: 1.807766e-01	ci right 1.834541e-01	k: 58276	n:320000
KS ci ratio: 3.324173e-01	ci left: 3.623148e-04	ci right 5.094792e-04	k: 138	n:320000
CYP2J2   320000 perm   108 sec   (2963 perm/sec)   p_kst 4.312500e-04   p_cons 1.821125e-01   p_joint 1.109375e-03

Joint ci ratio: 2.056331e-01	ci left: 9.869169e-04	ci right 1.215928e-03	k: 362	n:330000
Cons ci ratio: 1.446126e-02	ci left: 1.807936e-01	ci right 1.834301e-01	k: 60096	n:330000
KS ci ratio: 3.288878e-01	ci left: 3.596718e-04	ci right 5.038835e-04	k: 141	n:330000
CYP2J2   330000 perm   113 sec   (2928 perm/sec)   p_kst 4.272727e-04   p_cons 1.821091e-01   p_joint 1.096970e-03

Joint ci ratio: 1.861232e-01	ci left: 1.181684e-03	ci right 1.426943e-03	k: 442	n:340000
Cons ci ratio: 1.341651e-02	ci left: 1.993431e-01	ci right 2.020385e-01	k: 68234	n:340000
KS ci ratio: 3.254684e-01	ci left: 3.571920e-04	ci right 4.986093e-04	k: 144	n:340000
CYP2J2   340000 perm   118 sec   (2891 perm/sec)   p_kst 4.235294e-04   p_cons 2.006882e-01   p_joint 1.300000e-03

Joint ci ratio: 1.838551e-01	ci left: 1.177894e-03	ci right 1.419055e-03	k: 453	n:350000
Cons ci ratio: 1.321426e-02	ci left: 1.995850e-01	ci right 2.022428e-01	k: 70319	n:350000
KS ci ratio: 3.189358e-01	ci left: 3.627433e-04	ci right 5.028875e-04	k: 150	n:350000
CYP2J2   350000 perm   123 sec   (2856 perm/sec)   p_kst 4.285714e-04   p_cons 2.009114e-01   p_joint 1.294286e-03

Joint ci ratio: 2.012506e-01	ci left: 9.468524e-04	ci right 1.161309e-03	k: 378	n:360000
Cons ci ratio: 1.303871e-02	ci left: 1.993760e-01	ci right 2.019954e-01	k: 72246	n:360000
KS ci ratio: 3.158146e-01	ci left: 3.603366e-04	ci right 4.979135e-04	k: 153	n:360000
CYP2J2   360000 perm   128 sec   (2822 perm/sec)   p_kst 4.250000e-04   p_cons 2.006833e-01   p_joint 1.050000e-03

Joint ci ratio: 2.173467e-01	ci left: 7.829464e-04	ci right 9.763594e-04	k: 324	n:370000
Cons ci ratio: 1.369183e-02	ci left: 1.801164e-01	ci right 1.826021e-01	k: 67102	n:370000
KS ci ratio: 3.137846e-01	ci left: 3.555761e-04	ci right 4.902877e-04	k: 155	n:370000
CYP2J2   370000 perm   133 sec   (2774 perm/sec)   p_kst 4.189189e-04   p_cons 1.813568e-01   p_joint 8.756757e-04

Joint ci ratio: 2.140778e-01	ci left: 7.872369e-04	ci right 9.784008e-04	k: 334	n:380000
Cons ci ratio: 1.351318e-02	ci left: 1.800735e-01	ci right 1.825261e-01	k: 68893	n:380000
KS ci ratio: 3.098376e-01	ci left: 3.559215e-04	ci right 4.887327e-04	k: 159	n:380000
CYP2J2   380000 perm   139 sec   (2741 perm/sec)   p_kst 4.184211e-04   p_cons 1.812974e-01   p_joint 8.789474e-04

Joint ci ratio: 2.112587e-01	ci left: 7.888993e-04	ci right 9.776177e-04	k: 343	n:390000
Cons ci ratio: 1.333213e-02	ci left: 1.802377e-01	ci right 1.826593e-01	k: 70764	n:390000
KS ci ratio: 3.051066e-01	ci left: 3.586270e-04	ci right 4.900075e-04	k: 164	n:390000
CYP2J2   390000 perm   144 sec   (2711 perm/sec)   p_kst 4.205128e-04   p_cons 1.814462e-01   p_joint 8.794872e-04

Joint ci ratio: 2.097410e-01	ci left: 7.810176e-04	ci right 9.663357e-04	k: 348	n:400000
Cons ci ratio: 1.316326e-02	ci left: 1.802792e-01	ci right 1.826704e-01	k: 72589	n:400000
KS ci ratio: 3.023707e-01	ci left: 3.565897e-04	ci right 4.858272e-04	k: 167	n:400000
CYP2J2   400000 perm   149 sec   (2682 perm/sec)   p_kst 4.175000e-04   p_cons 1.814725e-01   p_joint 8.700000e-04

Joint ci ratio: 2.079617e-01	ci left: 7.758369e-04	ci right 9.581653e-04	k: 354	n:410000
Cons ci ratio: 1.300577e-02	ci left: 1.802020e-01	ci right 1.825634e-01	k: 74366	n:410000
KS ci ratio: 2.988341e-01	ci left: 3.569128e-04	ci right 4.844674e-04	k: 171	n:410000
CYP2J2   410000 perm   155 sec   (2653 perm/sec)   p_kst 4.170732e-04   p_cons 1.813805e-01   p_joint 8.634146e-04

Joint ci ratio: 2.197392e-01	ci left: 6.739798e-04	ci right 8.425546e-04	k: 317	n:420000
Cons ci ratio: 1.285813e-02	ci left: 1.800290e-01	ci right 1.823611e-01	k: 76101	n:420000
KS ci ratio: 2.937538e-01	ci left: 3.616391e-04	ci right 4.882767e-04	k: 177	n:420000
CYP2J2   420000 perm   160 sec   (2626 perm/sec)   p_kst 4.214286e-04   p_cons 1.811929e-01   p_joint 7.547619e-04

Joint ci ratio: 2.180324e-01	ci left: 6.692961e-04	ci right 8.352249e-04	k: 322	n:430000
Cons ci ratio: 1.271162e-02	ci left: 1.799523e-01	ci right 1.822567e-01	k: 77874	n:430000
KS ci ratio: 2.913096e-01	ci left: 3.596937e-04	ci right 4.844088e-04	k: 180	n:430000
CYP2J2   430000 perm   166 sec   (2595 perm/sec)   p_kst 4.186047e-04   p_cons 1.811023e-01   p_joint 7.488372e-04

Joint ci ratio: 2.176973e-01	ci left: 6.562331e-04	ci right 8.186398e-04	k: 323	n:440000
Cons ci ratio: 1.257242e-02	ci left: 1.798225e-01	ci right 1.820999e-01	k: 79622	n:440000
KS ci ratio: 2.905093e-01	ci left: 3.536255e-04	ci right 4.758378e-04	k: 181	n:440000
CYP2J2   440000 perm   171 sec   (2571 perm/sec)   p_kst 4.113636e-04   p_cons 1.809591e-01   p_joint 7.340909e-04

Joint ci ratio: 2.166975e-01	ci left: 6.479538e-04	ci right 8.074770e-04	k: 326	n:450000
Cons ci ratio: 1.243171e-02	ci left: 1.798406e-01	ci right 1.820924e-01	k: 81434	n:450000
KS ci ratio: 2.873686e-01	ci left: 3.540120e-04	ci right 4.747950e-04	k: 185	n:450000
CYP2J2   450000 perm   177 sec   (2543 perm/sec)   p_kst 4.111111e-04   p_cons 1.809644e-01   p_joint 7.244444e-04

Joint ci ratio: 2.177008e-01	ci left: 6.277002e-04	ci right 7.830482e-04	k: 323	n:460000
Cons ci ratio: 1.229527e-02	ci left: 1.798666e-01	ci right 1.820939e-01	k: 83250	n:460000
KS ci ratio: 2.843276e-01	ci left: 3.543884e-04	ci right 4.737907e-04	k: 189	n:460000
CYP2J2   460000 perm   183 sec   (2518 perm/sec)   p_kst 4.108696e-04   p_cons 1.809783e-01   p_joint 7.021739e-04

Joint ci ratio: 2.173671e-01	ci left: 6.163562e-04	ci right 7.686316e-04	k: 324	n:470000
Cons ci ratio: 1.216052e-02	ci left: 1.799575e-01	ci right 1.821613e-01	k: 85097	n:470000
KS ci ratio: 2.835833e-01	ci left: 3.488242e-04	ci right 4.659890e-04	k: 190	n:470000
CYP2J2   470000 perm   189 sec   (2492 perm/sec)   p_kst 4.042553e-04   p_cons 1.810574e-01   p_joint 6.893617e-04

Joint ci ratio: 2.153882e-01	ci left: 6.153380e-04	ci right 7.657948e-04	k: 330	n:480000
Cons ci ratio: 1.202842e-02	ci left: 1.800863e-01	ci right 1.822676e-01	k: 86964	n:480000
KS ci ratio: 2.821107e-01	ci left: 3.454281e-04	ci right 4.607425e-04	k: 192	n:480000
CYP2J2   480000 perm   195 sec   (2467 perm/sec)   p_kst 4.000000e-04   p_cons 1.811750e-01   p_joint 6.875000e-04

Joint ci ratio: 2.122058e-01	ci left: 6.220958e-04	ci right 7.716653e-04	k: 340	n:490000
Cons ci ratio: 1.190650e-02	ci left: 1.800613e-01	ci right 1.822200e-01	k: 88758	n:490000
KS ci ratio: 2.799437e-01	ci left: 3.440695e-04	ci right 4.578925e-04	k: 195	n:490000
CYP2J2   490000 perm   201 sec   (2443 perm/sec)   p_kst 3.979592e-04   p_cons 1.811388e-01   p_joint 6.938776e-04

Joint ci ratio: 2.147429e-01	ci left: 5.945083e-04	ci right 7.393792e-04	k: 332	n:500000
Cons ci ratio: 1.178361e-02	ci left: 1.801531e-01	ci right 1.822905e-01	k: 90610	n:500000
KS ci ratio: 2.771301e-01	ci left: 3.446294e-04	ci right 4.572919e-04	k: 199	n:500000
CYP2J2   500000 perm   207 sec   (2418 perm/sec)   p_kst 3.980000e-04   p_cons 1.812200e-01   p_joint 6.640000e-04

Joint ci ratio: 2.141019e-01	ci left: 5.865620e-04	ci right 7.290137e-04	k: 334	n:510000
Cons ci ratio: 1.166884e-02	ci left: 1.801300e-01	ci right 1.822462e-01	k: 92405	n:510000
KS ci ratio: 2.743997e-01	ci left: 3.451729e-04	ci right 4.567095e-04	k: 203	n:510000
CYP2J2   510000 perm   213 sec   (2395 perm/sec)   p_kst 3.980392e-04   p_cons 1.811863e-01   p_joint 6.549020e-04

Joint ci ratio: 2.134666e-01	ci left: 5.789220e-04	ci right 7.190464e-04	k: 336	n:520000
Cons ci ratio: 1.156148e-02	ci left: 1.800023e-01	ci right 1.820974e-01	k: 94145	n:520000
KS ci ratio: 2.717485e-01	ci left: 3.457006e-04	ci right 4.561443e-04	k: 207	n:520000
CYP2J2   520000 perm   220 sec   (2368 perm/sec)   p_kst 3.980769e-04   p_cons 1.810481e-01   p_joint 6.461538e-04

Joint ci ratio: 2.106715e-01	ci left: 5.840784e-04	ci right 7.233609e-04	k: 345	n:530000
Cons ci ratio: 1.144967e-02	ci left: 1.800697e-01	ci right 1.821451e-01	k: 95986	n:530000
KS ci ratio: 2.679113e-01	ci left: 3.497331e-04	ci right 4.596224e-04	k: 213	n:530000
CYP2J2   530000 perm   226 sec   (2345 perm/sec)   p_kst 4.018868e-04   p_cons 1.811057e-01   p_joint 6.509434e-04

Joint ci ratio: 2.088684e-01	ci left: 5.837896e-04	ci right 7.216593e-04	k: 351	n:540000
Cons ci ratio: 1.134140e-02	ci left: 1.801254e-01	ci right 1.821817e-01	k: 97822	n:540000
KS ci ratio: 2.660532e-01	ci left: 3.484402e-04	ci right 4.570374e-04	k: 216	n:540000
CYP2J2   540000 perm   233 sec   (2322 perm/sec)   p_kst 4.000000e-04   p_cons 1.811519e-01   p_joint 6.500000e-04

Joint ci ratio: 2.071108e-01	ci left: 5.835161e-04	ci right 7.200147e-04	k: 357	n:550000
Cons ci ratio: 1.123793e-02	ci left: 1.801320e-01	ci right 1.821695e-01	k: 99632	n:550000
KS ci ratio: 2.524538e-01	ci left: 3.829087e-04	ci right 4.951902e-04	k: 240	n:550000
CYP2J2   550000 perm   239 sec   (2299 perm/sec)   p_kst 4.363636e-04   p_cons 1.811491e-01   p_joint 6.490909e-04

Joint ci ratio: 2.062491e-01	ci left: 5.781759e-04	ci right 7.127916e-04	k: 360	n:560000
Cons ci ratio: 1.114495e-02	ci left: 1.799336e-01	ci right 1.819519e-01	k: 101327	n:560000
KS ci ratio: 2.493684e-01	ci left: 3.861117e-04	ci right 4.977340e-04	k: 246	n:560000
CYP2J2   560000 perm   246 sec   (2279 perm/sec)   p_kst 4.392857e-04   p_cons 1.809411e-01   p_joint 6.428571e-04

Joint ci ratio: 2.045563e-01	ci left: 5.780174e-04	ci right 7.113534e-04	k: 366	n:570000
Cons ci ratio: 1.104437e-02	ci left: 1.800065e-01	ci right 1.820073e-01	k: 103173	n:570000
KS ci ratio: 2.478680e-01	ci left: 3.842730e-04	ci right 4.945923e-04	k: 249	n:570000
CYP2J2   570000 perm   252 sec   (2258 perm/sec)   p_kst 4.368421e-04   p_cons 1.810053e-01   p_joint 6.421053e-04

Joint ci ratio: 2.037259e-01	ci left: 5.729594e-04	ci right 7.045254e-04	k: 369	n:580000
Cons ci ratio: 1.094754e-02	ci left: 1.800477e-01	ci right 1.820313e-01	k: 105002	n:580000
KS ci ratio: 2.459086e-01	ci left: 3.841175e-04	ci right 4.933872e-04	k: 253	n:580000
CYP2J2   580000 perm   259 sec   (2237 perm/sec)   p_kst 4.362069e-04   p_cons 1.810379e-01   p_joint 6.362069e-04

Joint ci ratio: 2.029056e-01	ci left: 5.680740e-04	ci right 6.979278e-04	k: 372	n:590000
Cons ci ratio: 1.085365e-02	ci left: 1.800758e-01	ci right 1.820426e-01	k: 106824	n:590000
KS ci ratio: 2.439950e-01	ci left: 3.839706e-04	ci right 4.922197e-04	k: 257	n:590000
CYP2J2   590000 perm   266 sec   (2218 perm/sec)   p_kst 4.355932e-04   p_cons 1.810576e-01   p_joint 6.305085e-04

Joint ci ratio: 2.026350e-01	ci left: 5.601879e-04	ci right 6.880471e-04	k: 373	n:600000
Cons ci ratio: 1.076346e-02	ci left: 1.800664e-01	ci right 1.820167e-01	k: 108624	n:600000
KS ci ratio: 2.430552e-01	ci left: 3.807009e-04	ci right 4.875525e-04	k: 259	n:600000
CYP2J2   600000 perm   273 sec   (2198 perm/sec)   p_kst 4.316667e-04   p_cons 1.810400e-01   p_joint 6.216667e-04

Joint ci ratio: 2.059693e-01	ci left: 5.323378e-04	ci right 6.560917e-04	k: 361	n:610000
Cons ci ratio: 1.067330e-02	ci left: 1.801179e-01	ci right 1.820523e-01	k: 110461	n:610000
KS ci ratio: 2.402980e-01	ci left: 3.837005e-04	ci right 4.899903e-04	k: 265	n:610000
CYP2J2   610000 perm   280 sec   (2178 perm/sec)   p_kst 4.344262e-04   p_cons 1.810836e-01   p_joint 5.918033e-04

Joint ci ratio: 2.054033e-01	ci left: 5.268113e-04	ci right 6.489015e-04	k: 363	n:620000
Cons ci ratio: 1.058267e-02	ci left: 1.802435e-01	ci right 1.821627e-01	k: 112345	n:620000
KS ci ratio: 2.389546e-01	ci left: 3.820599e-04	ci right 4.872160e-04	k: 268	n:620000
CYP2J2   620000 perm   287 sec   (2160 perm/sec)   p_kst 4.322581e-04   p_cons 1.812016e-01   p_joint 5.854839e-04

Joint ci ratio: 2.048420e-01	ci left: 5.214606e-04	ci right 6.419391e-04	k: 365	n:630000
Cons ci ratio: 1.049868e-02	ci left: 1.802416e-01	ci right 1.821454e-01	k: 114151	n:630000
KS ci ratio: 2.367642e-01	ci left: 3.834591e-04	ci right 4.878910e-04	k: 273	n:630000
CYP2J2   630000 perm   294 sec   (2141 perm/sec)   p_kst 4.333333e-04   p_cons 1.811921e-01   p_joint 5.793651e-04

Joint ci ratio: 2.031833e-01	ci left: 5.222089e-04	ci right 6.417621e-04	k: 371	n:640000
Cons ci ratio: 1.041683e-02	ci left: 1.802351e-01	ci right 1.821240e-01	k: 115954	n:640000
KS ci ratio: 2.350547e-01	ci left: 3.833481e-04	ci right 4.868864e-04	k: 277	n:640000
CYP2J2   640000 perm   302 sec   (2122 perm/sec)   p_kst 4.328125e-04   p_cons 1.811781e-01   p_joint 5.796875e-04

Joint ci ratio: 2.015643e-01	ci left: 5.229379e-04	ci right 6.415867e-04	k: 377	n:650000
Cons ci ratio: 1.033916e-02	ci left: 1.801629e-01	ci right 1.820368e-01	k: 117714	n:650000
KS ci ratio: 2.346337e-01	ci left: 3.788983e-04	ci right 4.810248e-04	k: 278	n:650000
CYP2J2   650000 perm   309 sec   (2103 perm/sec)   p_kst 4.276923e-04   p_cons 1.810985e-01   p_joint 5.800000e-04

Joint ci ratio: 2.059740e-01	ci left: 4.920081e-04	ci right 6.063892e-04	k: 361	n:660000
Cons ci ratio: 1.025954e-02	ci left: 1.801988e-01	ci right 1.820586e-01	k: 119544	n:660000
KS ci ratio: 2.342149e-01	ci left: 3.745835e-04	ci right 4.753407e-04	k: 279	n:660000
CYP2J2   660000 perm   317 sec   (2085 perm/sec)   p_kst 4.227273e-04   p_cons 1.811273e-01   p_joint 5.469697e-04

Joint ci ratio: 2.054079e-01	ci left: 4.874959e-04	ci right 6.004774e-04	k: 363	n:670000
Cons ci ratio: 1.018096e-02	ci left: 1.802560e-01	ci right 1.821020e-01	k: 121389	n:670000
KS ci ratio: 2.325597e-01	ci left: 3.746138e-04	ci right 4.745647e-04	k: 283	n:670000
CYP2J2   670000 perm   324 sec   (2067 perm/sec)   p_kst 4.223881e-04   p_cons 1.811776e-01   p_joint 5.417910e-04

Joint ci ratio: 2.116066e-01	ci left: 4.510557e-04	ci right 5.591559e-04	k: 342	n:680000
Cons ci ratio: 1.010962e-02	ci left: 1.801516e-01	ci right 1.819835e-01	k: 123125	n:680000
KS ci ratio: 2.309391e-01	ci left: 3.746456e-04	ci right 4.738090e-04	k: 287	n:680000
CYP2J2   680000 perm   332 sec   (2049 perm/sec)   p_kst 4.220588e-04   p_cons 1.810662e-01   p_joint 5.029412e-04

Joint ci ratio: 2.100809e-01	ci left: 4.513825e-04	ci right 5.586806e-04	k: 347	n:690000
Cons ci ratio: 1.003177e-02	ci left: 1.802860e-01	ci right 1.821051e-01	k: 125024	n:690000
KS ci ratio: 2.281823e-01	ci left: 3.787776e-04	ci right 4.776694e-04	k: 294	n:690000
CYP2J2   690000 perm   340 sec   (2031 perm/sec)   p_kst 4.260870e-04   p_cons 1.811942e-01   p_joint 5.028986e-04

Joint ci ratio: 2.091815e-01	ci left: 4.489948e-04	ci right 5.552100e-04	k: 350	n:700000
Cons ci ratio: 9.959950e-03	ci left: 1.802897e-01	ci right 1.820958e-01	k: 126834	n:700000
KS ci ratio: 2.274130e-01	ci left: 3.760606e-04	ci right 4.738656e-04	k: 296	n:700000
CYP2J2   700000 perm   347 sec   (2015 perm/sec)   p_kst 4.228571e-04   p_cons 1.811914e-01   p_joint 5.000000e-04

Joint ci ratio: 2.082936e-01	ci left: 4.466754e-04	ci right 5.518361e-04	k: 353	n:710000
Cons ci ratio: 9.891154e-03	ci left: 1.802484e-01	ci right 1.820415e-01	k: 128612	n:710000
KS ci ratio: 2.262733e-01	ci left: 3.747492e-04	ci right 4.716565e-04	k: 299	n:710000
CYP2J2   710000 perm   355 sec   (1998 perm/sec)   p_kst 4.211268e-04   p_cons 1.811437e-01   p_joint 4.971831e-04

Joint ci ratio: 2.071268e-01	ci left: 4.457381e-04	ci right 5.500158e-04	k: 357	n:720000
Cons ci ratio: 9.822706e-03	ci left: 1.802402e-01	ci right 1.820207e-01	k: 130413	n:720000
KS ci ratio: 2.251506e-01	ci left: 3.734754e-04	ci right 4.695076e-04	k: 302	n:720000
CYP2J2   720000 perm   363 sec   (1982 perm/sec)   p_kst 4.194444e-04   p_cons 1.811292e-01   p_joint 4.958333e-04

Joint ci ratio: 2.091837e-01	ci left: 4.305425e-04	ci right 5.323937e-04	k: 350	n:730000
Cons ci ratio: 9.755163e-03	ci left: 1.802473e-01	ci right 1.820156e-01	k: 132225	n:730000
KS ci ratio: 2.236790e-01	ci left: 3.735307e-04	ci right 4.688630e-04	k: 306	n:730000
CYP2J2   730000 perm   371 sec   (1966 perm/sec)   p_kst 4.191781e-04   p_cons 1.811301e-01   p_joint 4.794521e-04

Joint ci ratio: 2.065517e-01	ci left: 4.362536e-04	ci right 5.379934e-04	k: 359	n:740000
Cons ci ratio: 9.689526e-03	ci left: 1.802380e-01	ci right 1.819942e-01	k: 134025	n:740000
KS ci ratio: 2.215245e-01	ci left: 3.761391e-04	ci right 4.710864e-04	k: 312	n:740000
CYP2J2   740000 perm   380 sec   (1950 perm/sec)   p_kst 4.216216e-04   p_cons 1.811149e-01   p_joint 4.851351e-04

Joint ci ratio: 2.059808e-01	ci left: 4.329658e-04	ci right 5.336244e-04	k: 361	n:750000
Cons ci ratio: 9.627878e-03	ci left: 1.801465e-01	ci right 1.818906e-01	k: 135763	n:750000
KS ci ratio: 2.211719e-01	ci left: 3.723833e-04	ci right 4.662125e-04	k: 313	n:750000
CYP2J2   750000 perm   388 sec   (1933 perm/sec)   p_kst 4.173333e-04   p_cons 1.810173e-01   p_joint 4.813333e-04

Joint ci ratio: 2.048522e-01	ci left: 4.322613e-04	ci right 5.321366e-04	k: 365	n:760000
Cons ci ratio: 9.564293e-03	ci left: 1.801533e-01	ci right 1.818859e-01	k: 137574	n:760000
KS ci ratio: 2.194317e-01	ci left: 3.736994e-04	ci right 4.670194e-04	k: 318	n:760000
CYP2J2   760000 perm   396 sec   (1919 perm/sec)   p_kst 4.184211e-04   p_cons 1.810184e-01   p_joint 4.802632e-04

Joint ci ratio: 2.042952e-01	ci left: 4.291118e-04	ci right 5.279561e-04	k: 367	n:770000
Cons ci ratio: 9.503491e-03	ci left: 1.801121e-01	ci right 1.818332e-01	k: 139348	n:770000
KS ci ratio: 2.184072e-01	ci left: 3.725287e-04	ci right 4.650637e-04	k: 321	n:770000
CYP2J2   770000 perm   405 sec   (1903 perm/sec)   p_kst 4.168831e-04   p_cons 1.809714e-01   p_joint 4.766234e-04

Joint ci ratio: 2.029212e-01	ci left: 4.296938e-04	ci right 5.279240e-04	k: 372	n:780000
Cons ci ratio: 9.443425e-03	ci left: 1.800847e-01	ci right 1.817946e-01	k: 141132	n:780000
KS ci ratio: 2.170632e-01	ci left: 3.726012e-04	ci right 4.645088e-04	k: 325	n:780000
CYP2J2   780000 perm   413 sec   (1888 perm/sec)   p_kst 4.166667e-04   p_cons 1.809385e-01   p_joint 4.769231e-04

Joint ci ratio: 1.531035e-01	ci left: 7.656319e-04	ci right 8.937700e-04	k: 654	n:790000
Cons ci ratio: 9.236622e-03	ci left: 1.848039e-01	ci right 1.865200e-01	k: 146672	n:790000
KS ci ratio: 2.164007e-01	ci left: 3.702789e-04	ci right 4.612978e-04	k: 327	n:790000
CYP2J2   790000 perm   422 sec   (1874 perm/sec)   p_kst 4.139241e-04   p_cons 1.856608e-01   p_joint 8.278481e-04

Joint ci ratio: 1.521770e-01	ci left: 7.656796e-04	ci right 8.929796e-04	k: 662	n:800000
Cons ci ratio: 9.175928e-03	ci left: 1.849008e-01	ci right 1.866065e-01	k: 148602	n:800000
KS ci ratio: 2.147698e-01	ci left: 3.715630e-04	ci right 4.621185e-04	k: 332	n:800000
CYP2J2   800000 perm   430 sec   (1860 perm/sec)   p_kst 4.150000e-04   p_cons 1.857525e-01   p_joint 8.275000e-04

Joint ci ratio: 1.163255e-01	ci left: 1.318546e-03	ci right 1.482584e-03	k: 1133	n:810000
Cons ci ratio: 9.118982e-03	ci left: 1.849104e-01	ci right 1.866055e-01	k: 150463	n:810000
KS ci ratio: 2.131753e-01	ci left: 3.728179e-04	ci right 4.629164e-04	k: 337	n:810000
CYP2J2   810000 perm   439 sec   (1846 perm/sec)   p_kst 4.160494e-04   p_cons 1.857568e-01   p_joint 1.398765e-03

Joint ci ratio: 1.161216e-01	ci left: 1.307202e-03	ci right 1.469524e-03	k: 1137	n:820000
Cons ci ratio: 9.061549e-03	ci left: 1.849708e-01	ci right 1.866558e-01	k: 152366	n:820000
KS ci ratio: 2.125476e-01	ci left: 3.705803e-04	ci right 4.598400e-04	k: 339	n:820000
CYP2J2   820000 perm   447 sec   (1833 perm/sec)   p_kst 4.134146e-04   p_cons 1.858122e-01   p_joint 1.386585e-03

Joint ci ratio: 1.152137e-01	ci left: 1.312512e-03	ci right 1.474133e-03	k: 1155	n:830000
Cons ci ratio: 9.008702e-03	ci left: 1.849120e-01	ci right 1.865866e-01	k: 154171	n:830000
KS ci ratio: 2.110017e-01	ci left: 3.718201e-04	ci right 4.606429e-04	k: 344	n:830000
CYP2J2   830000 perm   456 sec   (1819 perm/sec)   p_kst 4.144578e-04   p_cons 1.857482e-01   p_joint 1.391566e-03

Joint ci ratio: 1.146697e-01	ci left: 1.309605e-03	ci right 1.470055e-03	k: 1166	n:840000
Cons ci ratio: 8.954971e-03	ci left: 1.849153e-01	ci right 1.865798e-01	k: 156027	n:840000
KS ci ratio: 2.097891e-01	ci left: 3.719047e-04	ci right 4.601715e-04	k: 348	n:840000
CYP2J2   840000 perm   465 sec   (1805 perm/sec)   p_kst 4.142857e-04   p_cons 1.857464e-01   p_joint 1.388095e-03

Joint ci ratio: 1.138914e-01	ci left: 1.312484e-03	ci right 1.472122e-03	k: 1182	n:850000
Cons ci ratio: 8.901670e-03	ci left: 1.849361e-01	ci right 1.865908e-01	k: 157898	n:850000
KS ci ratio: 2.083021e-01	ci left: 3.731038e-04	ci right 4.609475e-04	k: 353	n:850000
CYP2J2   850000 perm   474 sec   (1792 perm/sec)   p_kst 4.152941e-04   p_cons 1.857624e-01   p_joint 1.390588e-03

Joint ci ratio: 1.158708e-01	ci left: 1.252045e-03	ci right 1.407159e-03	k: 1142	n:860000
Cons ci ratio: 8.850603e-03	ci left: 1.849123e-01	ci right 1.865573e-01	k: 159731	n:860000
KS ci ratio: 2.068464e-01	ci left: 3.742772e-04	ci right 4.617034e-04	k: 358	n:860000
CYP2J2   860000 perm   483 sec   (1779 perm/sec)   p_kst 4.162791e-04   p_cons 1.857337e-01   p_joint 1.327907e-03

Joint ci ratio: 1.151178e-01	ci left: 1.254397e-03	ci right 1.408724e-03	k: 1157	n:870000
Cons ci ratio: 8.798098e-03	ci left: 1.849683e-01	ci right 1.866039e-01	k: 161633	n:870000
KS ci ratio: 2.048585e-01	ci left: 3.776064e-04	ci right 4.648565e-04	k: 365	n:870000
CYP2J2   870000 perm   492 sec   (1768 perm/sec)   p_kst 4.195402e-04   p_cons 1.857851e-01   p_joint 1.329885e-03

Joint ci ratio: 1.153683e-01	ci left: 1.234623e-03	ci right 1.386871e-03	k: 1152	n:880000
Cons ci ratio: 8.748882e-03	ci left: 1.849413e-01	ci right 1.865676e-01	k: 163463	n:880000
KS ci ratio: 2.043013e-01	ci left: 3.754717e-04	ci right 4.619631e-04	k: 367	n:880000
CYP2J2   880000 perm   501 sec   (1755 perm/sec)   p_kst 4.170455e-04   p_cons 1.857534e-01   p_joint 1.309091e-03

Joint ci ratio: 1.157214e-01	ci left: 1.213113e-03	ci right 1.363197e-03	k: 1145	n:890000
Cons ci ratio: 8.697607e-03	ci left: 1.850148e-01	ci right 1.866321e-01	k: 165382	n:890000
KS ci ratio: 2.037486e-01	ci left: 3.733853e-04	ci right 4.591344e-04	k: 369	n:890000
CYP2J2   890000 perm   511 sec   (1743 perm/sec)   p_kst 4.146067e-04   p_cons 1.858225e-01   p_joint 1.286517e-03

Joint ci ratio: 1.206733e-01	ci left: 1.100428e-03	ci right 1.242813e-03	k: 1053	n:900000
Cons ci ratio: 8.650970e-03	ci left: 1.849559e-01	ci right 1.865639e-01	k: 167183	n:900000
KS ci ratio: 2.029277e-01	ci left: 3.724002e-04	ci right 4.575357e-04	k: 372	n:900000
CYP2J2   900000 perm   520 sec   (1730 perm/sec)   p_kst 4.133333e-04   p_cons 1.857589e-01   p_joint 1.170000e-03

Joint ci ratio: 1.198234e-01	ci left: 1.104324e-03	ci right 1.246135e-03	k: 1068	n:910000
Cons ci ratio: 8.604262e-03	ci left: 1.849267e-01	ci right 1.865258e-01	k: 169010	n:910000
KS ci ratio: 2.021167e-01	ci left: 3.714374e-04	ci right 4.559716e-04	k: 375	n:910000
CYP2J2   910000 perm   530 sec   (1718 perm/sec)   p_kst 4.120879e-04   p_cons 1.857253e-01   p_joint 1.173626e-03

Joint ci ratio: 1.192670e-01	ci left: 1.102865e-03	ci right 1.243785e-03	k: 1078	n:920000
Cons ci ratio: 8.556027e-03	ci left: 1.849785e-01	ci right 1.865691e-01	k: 170911	n:920000
KS ci ratio: 2.010501e-01	ci left: 3.715284e-04	ci right 4.555823e-04	k: 379	n:920000
CYP2J2   920000 perm   540 sec   (1705 perm/sec)   p_kst 4.119565e-04   p_cons 1.857728e-01   p_joint 1.171739e-03

Joint ci ratio: 1.187182e-01	ci left: 1.101438e-03	ci right 1.241483e-03	k: 1088	n:930000
Cons ci ratio: 8.512921e-03	ci left: 1.848758e-01	ci right 1.864574e-01	k: 172669	n:930000
KS ci ratio: 2.005233e-01	ci left: 3.695758e-04	ci right 4.529422e-04	k: 381	n:930000
CYP2J2   930000 perm   549 sec   (1694 perm/sec)   p_kst 4.096774e-04   p_cons 1.856656e-01   p_joint 1.169892e-03

Joint ci ratio: 1.176424e-01	ci left: 1.110369e-03	ci right 1.250181e-03	k: 1108	n:940000
Cons ci ratio: 8.468790e-03	ci left: 1.848347e-01	ci right 1.864077e-01	k: 174483	n:940000
KS ci ratio: 1.987107e-01	ci left: 3.727189e-04	ci right 4.559421e-04	k: 388	n:940000
CYP2J2   940000 perm   559 sec   (1682 perm/sec)   p_kst 4.127660e-04   p_cons 1.856202e-01   p_joint 1.178723e-03

Joint ci ratio: 1.186107e-01	ci left: 1.080292e-03	ci right 1.217515e-03	k: 1090	n:950000
Cons ci ratio: 8.425044e-03	ci left: 1.848050e-01	ci right 1.863696e-01	k: 176307	n:950000
KS ci ratio: 1.976968e-01	ci left: 3.727971e-04	ci right 4.555619e-04	k: 392	n:950000
CYP2J2   950000 perm   569 sec   (1670 perm/sec)   p_kst 4.126316e-04   p_cons 1.855863e-01   p_joint 1.147368e-03

Joint ci ratio: 1.178568e-01	ci left: 1.083191e-03	ci right 1.219847e-03	k: 1104	n:960000
Cons ci ratio: 8.380121e-03	ci left: 1.848425e-01	ci right 1.863990e-01	k: 178195	n:960000
KS ci ratio: 1.964510e-01	ci left: 3.738651e-04	ci right 4.562814e-04	k: 397	n:960000
CYP2J2   960000 perm   579 sec   (1659 perm/sec)   p_kst 4.135417e-04   p_cons 1.856198e-01   p_joint 1.150000e-03

Joint ci ratio: 1.173272e-01	ci left: 1.082030e-03	ci right 1.217884e-03	k: 1114	n:970000
Cons ci ratio: 8.336563e-03	ci left: 1.848555e-01	ci right 1.864041e-01	k: 180060	n:970000
KS ci ratio: 1.957149e-01	ci left: 3.729518e-04	ci right 4.548219e-04	k: 400	n:970000
CYP2J2   970000 perm   589 sec   (1647 perm/sec)   p_kst 4.123711e-04   p_cons 1.856289e-01   p_joint 1.148454e-03

Joint ci ratio: 1.169087e-01	ci left: 1.078913e-03	ci right 1.213859e-03	k: 1122	n:980000
Cons ci ratio: 8.295077e-03	ci left: 1.848174e-01	ci right 1.863579e-01	k: 181875	n:980000
KS ci ratio: 1.945059e-01	ci left: 3.739990e-04	ci right 4.555318e-04	k: 405	n:980000
CYP2J2   980000 perm   599 sec   (1637 perm/sec)   p_kst 4.132653e-04   p_cons 1.855867e-01   p_joint 1.144898e-03

Joint ci ratio: 1.163918e-01	ci left: 1.077822e-03	ci right 1.211993e-03	k: 1132	n:990000
Cons ci ratio: 8.252990e-03	ci left: 1.848245e-01	ci right 1.863571e-01	k: 183734	n:990000
KS ci ratio: 1.940288e-01	ci left: 3.721431e-04	ci right 4.530489e-04	k: 407	n:990000
CYP2J2   990000 perm   609 sec   (1627 perm/sec)   p_kst 4.111111e-04   p_cons 1.855899e-01   p_joint 1.143434e-03

Joint ci ratio: 1.157802e-01	ci left: 1.078695e-03	ci right 1.212222e-03	k: 1144	n:1000000
Cons ci ratio: 8.210641e-03	ci left: 1.848644e-01	ci right 1.863895e-01	k: 185626	n:1000000
KS ci ratio: 1.923852e-01	ci left: 3.750832e-04	ci right 4.558565e-04	k: 414	n:1000000
CYP2J2   1000000 perm   619 sec   (1616 perm/sec)   p_kst 4.140000e-04   p_cons 1.856260e-01   p_joint 1.144000e-03

Joint ci ratio: 1.158315e-01	ci left: 1.067053e-03	ci right 1.199201e-03	k: 1143	n:1010000
Cons ci ratio: 8.169232e-03	ci left: 1.848926e-01	ci right 1.864102e-01	k: 187507	n:1010000
KS ci ratio: 1.914647e-01	ci left: 3.751396e-04	ci right 4.554935e-04	k: 418	n:1010000
CYP2J2   1010000 perm   630 sec   (1604 perm/sec)   p_kst 4.138614e-04   p_cons 1.856505e-01   p_joint 1.131683e-03

Joint ci ratio: 1.156804e-01	ci left: 1.059447e-03	ci right 1.190471e-03	k: 1146	n:1020000
Cons ci ratio: 8.130841e-03	ci left: 1.848312e-01	ci right 1.863411e-01	k: 189297	n:1020000
KS ci ratio: 1.907830e-01	ci left: 3.742622e-04	ci right 4.541097e-04	k: 421	n:1020000
CYP2J2   1020000 perm   640 sec   (1594 perm/sec)   p_kst 4.127451e-04   p_cons 1.855853e-01   p_joint 1.123529e-03

Joint ci ratio: 1.150303e-01	ci left: 1.061419e-03	ci right 1.191898e-03	k: 1159	n:1030000
Cons ci ratio: 8.090440e-03	ci left: 1.848661e-01	ci right 1.863687e-01	k: 191185	n:1030000
KS ci ratio: 1.892199e-01	ci left: 3.771015e-04	ci right 4.568198e-04	k: 428	n:1030000
CYP2J2   1030000 perm   650 sec   (1584 perm/sec)   p_kst 4.155340e-04   p_cons 1.856165e-01   p_joint 1.125243e-03

Joint ci ratio: 1.169126e-01	ci left: 1.016666e-03	ci right 1.143831e-03	k: 1122	n:1040000
Cons ci ratio: 8.051480e-03	ci left: 1.848686e-01	ci right 1.863640e-01	k: 193040	n:1040000
KS ci ratio: 1.885618e-01	ci left: 3.762237e-04	ci right 4.554482e-04	k: 431	n:1040000
CYP2J2   1040000 perm   661 sec   (1573 perm/sec)   p_kst 4.144231e-04   p_cons 1.856154e-01   p_joint 1.078846e-03

Joint ci ratio: 1.158847e-01	ci left: 1.025477e-03	ci right 1.152539e-03	k: 1142	n:1050000
Cons ci ratio: 8.012421e-03	ci left: 1.848957e-01	ci right 1.863841e-01	k: 194921	n:1050000
KS ci ratio: 1.859955e-01	ci left: 3.835336e-04	ci right 4.630741e-04	k: 443	n:1050000
CYP2J2   1050000 perm   672 sec   (1563 perm/sec)   p_kst 4.219048e-04   p_cons 1.856390e-01   p_joint 1.087619e-03

Joint ci ratio: 1.155820e-01	ci left: 1.021299e-03	ci right 1.147490e-03	k: 1148	n:1060000
Cons ci ratio: 7.974721e-03	ci left: 1.848923e-01	ci right 1.863736e-01	k: 196770	n:1060000
KS ci ratio: 1.857867e-01	ci left: 3.808148e-04	ci right 4.596928e-04	k: 444	n:1060000
CYP2J2   1060000 perm   683 sec   (1553 perm/sec)   p_kst 4.188679e-04   p_cons 1.856321e-01   p_joint 1.083019e-03

Joint ci ratio: 1.154319e-01	ci left: 1.014477e-03	ci right 1.139651e-03	k: 1151	n:1070000
Cons ci ratio: 7.937278e-03	ci left: 1.848992e-01	ci right 1.863735e-01	k: 198630	n:1070000
KS ci ratio: 1.853708e-01	ci left: 3.790380e-04	ci right 4.573526e-04	k: 446	n:1070000
CYP2J2   1070000 perm   694 sec   (1543 perm/sec)   p_kst 4.168224e-04   p_cons 1.856355e-01   p_joint 1.075701e-03

Joint ci ratio: 1.150333e-01	ci left: 1.012278e-03	ci right 1.136719e-03	k: 1159	n:1080000
Cons ci ratio: 7.899197e-03	ci left: 1.849504e-01	ci right 1.864180e-01	k: 200538	n:1080000
KS ci ratio: 1.845470e-01	ci left: 3.790606e-04	ci right 4.569928e-04	k: 450	n:1080000
CYP2J2   1080000 perm   704 sec   (1533 perm/sec)   p_kst 4.166667e-04   p_cons 1.856833e-01   p_joint 1.073148e-03

Joint ci ratio: 1.146880e-01	ci left: 1.009228e-03	ci right 1.132897e-03	k: 1166	n:1090000
Cons ci ratio: 7.862732e-03	ci left: 1.849594e-01	ci right 1.864203e-01	k: 202401	n:1090000
KS ci ratio: 1.837340e-01	ci left: 3.790836e-04	ci right 4.566389e-04	k: 454	n:1090000
CYP2J2   1090000 perm   715 sec   (1524 perm/sec)   p_kst 4.165138e-04   p_cons 1.856890e-01   p_joint 1.069725e-03

Joint ci ratio: 1.140060e-01	ci left: 1.012417e-03	ci right 1.135689e-03	k: 1180	n:1100000
Cons ci ratio: 7.827567e-03	ci left: 1.849374e-01	ci right 1.863916e-01	k: 204230	n:1100000
KS ci ratio: 1.829317e-01	ci left: 3.791069e-04	ci right 4.562907e-04	k: 458	n:1100000
CYP2J2   1100000 perm   726 sec   (1515 perm/sec)   p_kst 4.163636e-04   p_cons 1.856636e-01   p_joint 1.072727e-03

Joint ci ratio: 1.144928e-01	ci left: 9.945436e-04	ci right 1.116192e-03	k: 1170	n:1110000
Cons ci ratio: 7.791361e-03	ci left: 1.849743e-01	ci right 1.864220e-01	k: 206124	n:1110000
KS ci ratio: 1.821398e-01	ci left: 3.791304e-04	ci right 4.559481e-04	k: 462	n:1110000
CYP2J2   1110000 perm   737 sec   (1506 perm/sec)   p_kst 4.162162e-04   p_cons 1.856973e-01   p_joint 1.054054e-03

Joint ci ratio: 1.153345e-01	ci left: 9.709208e-04	ci right 1.090612e-03	k: 1153	n:1120000
Cons ci ratio: 7.755836e-03	ci left: 1.850034e-01	ci right 1.864447e-01	k: 208010	n:1120000
KS ci ratio: 1.815526e-01	ci left: 3.783020e-04	ci right 4.546775e-04	k: 465	n:1120000
CYP2J2   1120000 perm   749 sec   (1496 perm/sec)   p_kst 4.151786e-04   p_cons 1.857232e-01   p_joint 1.029464e-03

Joint ci ratio: 1.155356e-01	ci left: 9.588906e-04	ci right 1.077319e-03	k: 1149	n:1130000
Cons ci ratio: 7.721628e-03	ci left: 1.849993e-01	ci right 1.864342e-01	k: 209859	n:1130000
KS ci ratio: 1.807784e-01	ci left: 3.783335e-04	ci right 4.543540e-04	k: 469	n:1130000
CYP2J2   1130000 perm   760 sec   (1487 perm/sec)   p_kst 4.150442e-04   p_cons 1.857159e-01   p_joint 1.016814e-03

Joint ci ratio: 1.150862e-01	ci left: 9.581463e-04	ci right 1.075991e-03	k: 1158	n:1140000
Cons ci ratio: 7.687267e-03	ci left: 1.850189e-01	ci right 1.864476e-01	k: 211735	n:1140000
KS ci ratio: 1.805867e-01	ci left: 3.758522e-04	ci right 4.512853e-04	k: 470	n:1140000
CYP2J2   1140000 perm   771 sec   (1478 perm/sec)   p_kst 4.122807e-04   p_cons 1.857325e-01   p_joint 1.015789e-03

Joint ci ratio: 1.161959e-01	ci left: 9.312367e-04	ci right 1.046952e-03	k: 1136	n:1150000
Cons ci ratio: 7.654372e-03	ci left: 1.849983e-01	ci right 1.864207e-01	k: 213565	n:1150000
KS ci ratio: 1.796356e-01	ci left: 3.767358e-04	ci right 4.519047e-04	k: 475	n:1150000
CYP2J2   1150000 perm   783 sec   (1469 perm/sec)   p_kst 4.130435e-04   p_cons 1.857087e-01   p_joint 9.878261e-04

Joint ci ratio: 1.155371e-01	ci left: 9.340910e-04	ci right 1.049458e-03	k: 1149	n:1160000
Cons ci ratio: 7.620789e-03	ci left: 1.850220e-01	ci right 1.864382e-01	k: 215446	n:1160000
KS ci ratio: 1.788856e-01	ci left: 3.767816e-04	ci right 4.516118e-04	k: 479	n:1160000
CYP2J2   1160000 perm   794 sec   (1460 perm/sec)   p_kst 4.129310e-04   p_cons 1.857293e-01   p_joint 9.905172e-04

Joint ci ratio: 1.153370e-01	ci left: 9.294273e-04	ci right 1.044006e-03	k: 1153	n:1170000
Cons ci ratio: 7.587600e-03	ci left: 1.850469e-01	ci right 1.864572e-01	k: 217329	n:1170000
KS ci ratio: 1.785142e-01	ci left: 3.751942e-04	ci right 4.495377e-04	k: 481	n:1170000
CYP2J2   1170000 perm   806 sec   (1451 perm/sec)   p_kst 4.111111e-04   p_cons 1.857513e-01   p_joint 9.854701e-04

Joint ci ratio: 1.148405e-01	ci left: 9.297814e-04	ci right 1.043877e-03	k: 1163	n:1180000
Cons ci ratio: 7.556345e-03	ci left: 1.850114e-01	ci right 1.864156e-01	k: 219141	n:1180000
KS ci ratio: 1.775954e-01	ci left: 3.760630e-04	ci right 4.501540e-04	k: 486	n:1180000
CYP2J2   1180000 perm   818 sec   (1443 perm/sec)   p_kst 4.118644e-04   p_cons 1.857127e-01   p_joint 9.855932e-04

Joint ci ratio: 1.142530e-01	ci left: 9.317633e-04	ci right 1.045478e-03	k: 1175	n:1190000
Cons ci ratio: 7.525284e-03	ci left: 1.849841e-01	ci right 1.863822e-01	k: 220962	n:1190000
KS ci ratio: 1.766906e-01	ci left: 3.769182e-04	ci right 4.507589e-04	k: 491	n:1190000
CYP2J2   1190000 perm   830 sec   (1434 perm/sec)   p_kst 4.126050e-04   p_cons 1.856824e-01   p_joint 9.873950e-04

Joint ci ratio: 1.139146e-01	ci left: 9.296654e-04	ci right 1.042765e-03	k: 1182	n:1200000
Cons ci ratio: 7.492972e-03	ci left: 1.850229e-01	ci right 1.864153e-01	k: 222862	n:1200000
KS ci ratio: 1.765116e-01	ci left: 3.745737e-04	ci right 4.478728e-04	k: 492	n:1200000
CYP2J2   1200000 perm   842 sec   (1425 perm/sec)   p_kst 4.100000e-04   p_cons 1.857183e-01   p_joint 9.850000e-04

Joint ci ratio: 1.135314e-01	ci left: 9.284057e-04	ci right 1.040947e-03	k: 1190	n:1210000
Cons ci ratio: 7.462989e-03	ci left: 1.849835e-01	ci right 1.863700e-01	k: 224668	n:1210000
KS ci ratio: 1.757998e-01	ci left: 3.746381e-04	ci right 4.476228e-04	k: 496	n:1210000
CYP2J2   1210000 perm   854 sec   (1417 perm/sec)   p_kst 4.099174e-04   p_cons 1.856760e-01   p_joint 9.834711e-04

Joint ci ratio: 1.132941e-01	ci left: 9.247778e-04	ci right 1.036629e-03	k: 1195	n:1220000
Cons ci ratio: 7.430120e-03	ci left: 1.850766e-01	ci right 1.864577e-01	k: 226635	n:1220000
KS ci ratio: 1.754473e-01	ci left: 3.731345e-04	ci right 4.456651e-04	k: 498	n:1220000
CYP2J2   1220000 perm   866 sec   (1409 perm/sec)   p_kst 4.081967e-04   p_cons 1.857664e-01   p_joint 9.795082e-04

Joint ci ratio: 1.134847e-01	ci left: 9.140992e-04	ci right 1.024858e-03	k: 1191	n:1230000
Cons ci ratio: 7.399987e-03	ci left: 1.850740e-01	ci right 1.864494e-01	k: 228486	n:1230000
KS ci ratio: 1.750969e-01	ci left: 3.716556e-04	ci right 4.437391e-04	k: 500	n:1230000
CYP2J2   1230000 perm   878 sec   (1401 perm/sec)   p_kst 4.065041e-04   p_cons 1.857610e-01   p_joint 9.682927e-04

Joint ci ratio: 1.131530e-01	ci left: 9.122126e-04	ci right 1.022398e-03	k: 1198	n:1240000
Cons ci ratio: 7.371299e-03	ci left: 1.850272e-01	ci right 1.863969e-01	k: 230282	n:1240000
KS ci ratio: 1.745751e-01	ci left: 3.709718e-04	ci right 4.426857e-04	k: 503	n:1240000
CYP2J2   1240000 perm   891 sec   (1392 perm/sec)   p_kst 4.056452e-04   p_cons 1.857113e-01   p_joint 9.661290e-04

Joint ci ratio: 1.124980e-01	ci left: 9.157989e-04	ci right 1.025734e-03	k: 1212	n:1250000
Cons ci ratio: 7.341737e-03	ci left: 1.850306e-01	ci right 1.863948e-01	k: 232140	n:1250000
KS ci ratio: 1.735450e-01	ci left: 3.725950e-04	ci right 4.441531e-04	k: 509	n:1250000
CYP2J2   1250000 perm   903 sec   (1384 perm/sec)   p_kst 4.072000e-04   p_cons 1.857120e-01   p_joint 9.696000e-04

Joint ci ratio: 1.278766e-01	ci left: 6.975758e-04	ci right 7.936319e-04	k: 938	n:1260000
Cons ci ratio: 7.311819e-03	ci left: 1.850633e-01	ci right 1.864222e-01	k: 234035	n:1260000
KS ci ratio: 1.713740e-01	ci left: 3.795101e-04	ci right 4.513903e-04	k: 522	n:1260000
CYP2J2   1260000 perm   916 sec   (1376 perm/sec)   p_kst 4.142857e-04   p_cons 1.857421e-01   p_joint 7.444444e-04

Joint ci ratio: 1.285639e-01	ci left: 6.844614e-04	ci right 7.792568e-04	k: 928	n:1270000
Cons ci ratio: 7.283514e-03	ci left: 1.850437e-01	ci right 1.863971e-01	k: 235864	n:1270000
KS ci ratio: 1.707224e-01	ci left: 3.795366e-04	ci right 4.511203e-04	k: 526	n:1270000
CYP2J2   1270000 perm   928 sec   (1369 perm/sec)   p_kst 4.141732e-04   p_cons 1.857197e-01   p_joint 7.307087e-04

Joint ci ratio: 1.284260e-01	ci left: 6.806262e-04	ci right 7.747817e-04	k: 930	n:1280000
Cons ci ratio: 7.254412e-03	ci left: 1.850711e-01	ci right 1.864194e-01	k: 237753	n:1280000
KS ci ratio: 1.703995e-01	ci left: 3.780673e-04	ci right 4.492251e-04	k: 528	n:1280000
CYP2J2   1280000 perm   940 sec   (1361 perm/sec)   p_kst 4.125000e-04   p_cons 1.857445e-01   p_joint 7.265625e-04

Joint ci ratio: 1.279459e-01	ci left: 6.806024e-04	ci right 7.743759e-04	k: 937	n:1290000
Cons ci ratio: 7.226636e-03	ci left: 1.850571e-01	ci right 1.864001e-01	k: 239589	n:1290000
KS ci ratio: 1.699184e-01	ci left: 3.773630e-04	ci right 4.481673e-04	k: 531	n:1290000
CYP2J2   1290000 perm   953 sec   (1354 perm/sec)   p_kst 4.116279e-04   p_cons 1.857279e-01   p_joint 7.263566e-04

Joint ci ratio: 1.275388e-01	ci left: 6.798349e-04	ci right 7.731819e-04	k: 943	n:1300000
Cons ci ratio: 7.198976e-03	ci left: 1.850518e-01	ci right 1.863896e-01	k: 241436	n:1300000
KS ci ratio: 1.694414e-01	ci left: 3.766699e-04	ci right 4.471255e-04	k: 534	n:1300000
CYP2J2   1300000 perm   965 sec   (1347 perm/sec)   p_kst 4.107692e-04   p_cons 1.857200e-01   p_joint 7.253846e-04

Joint ci ratio: 1.272696e-01	ci left: 6.776013e-04	ci right 7.704306e-04	k: 947	n:1310000
Cons ci ratio: 7.171704e-03	ci left: 1.850436e-01	ci right 1.863762e-01	k: 243279	n:1310000
KS ci ratio: 1.689684e-01	ci left: 3.759877e-04	ci right 4.460993e-04	k: 537	n:1310000
CYP2J2   1310000 perm   978 sec   (1339 perm/sec)   p_kst 4.099237e-04   p_cons 1.857092e-01   p_joint 7.229008e-04

Joint ci ratio: 1.266034e-01	ci left: 6.798032e-04	ci right 7.724101e-04	k: 957	n:1320000
Cons ci ratio: 7.144471e-03	ci left: 1.850468e-01	ci right 1.863743e-01	k: 245137	n:1320000
KS ci ratio: 1.680339e-01	ci left: 3.774931e-04	ci right 4.474567e-04	k: 543	n:1320000
CYP2J2   1320000 perm   991 sec   (1332 perm/sec)   p_kst 4.113636e-04   p_cons 1.857098e-01   p_joint 7.250000e-04

Joint ci ratio: 1.256881e-01	ci left: 6.848862e-04	ci right 7.774607e-04	k: 971	n:1330000
Cons ci ratio: 7.116820e-03	ci left: 1.850807e-01	ci right 1.864033e-01	k: 247036	n:1330000
KS ci ratio: 1.666606e-01	ci left: 3.811384e-04	ci right 4.511423e-04	k: 552	n:1330000
CYP2J2   1330000 perm   1004 sec   (1325 perm/sec)   p_kst 4.150376e-04   p_cons 1.857414e-01   p_joint 7.300752e-04

Joint ci ratio: 1.260784e-01	ci left: 6.754383e-04	ci right 7.670404e-04	k: 965	n:1340000
Cons ci ratio: 7.089662e-03	ci left: 1.851067e-01	ci right 1.864245e-01	k: 248925	n:1340000
KS ci ratio: 1.665103e-01	ci left: 3.790092e-04	ci right 4.485530e-04	k: 553	n:1340000
CYP2J2   1340000 perm   1017 sec   (1317 perm/sec)   p_kst 4.126866e-04   p_cons 1.857649e-01   p_joint 7.201493e-04

Joint ci ratio: 1.260135e-01	ci left: 6.711523e-04	ci right 7.621228e-04	k: 966	n:1350000
Cons ci ratio: 7.062399e-03	ci left: 1.851501e-01	ci right 1.864631e-01	k: 250838	n:1350000
KS ci ratio: 1.659125e-01	ci left: 3.790414e-04	ci right 4.483165e-04	k: 557	n:1350000
CYP2J2   1350000 perm   1030 sec   (1310 perm/sec)   p_kst 4.125926e-04   p_cons 1.858059e-01   p_joint 7.155556e-04

Joint ci ratio: 1.254954e-01	ci left: 6.719147e-04	ci right 7.625863e-04	k: 974	n:1360000
Cons ci ratio: 7.035686e-03	ci left: 1.851826e-01	ci right 1.864908e-01	k: 252737	n:1360000
KS ci ratio: 1.653210e-01	ci left: 3.790736e-04	ci right 4.480830e-04	k: 561	n:1360000
CYP2J2   1360000 perm   1044 sec   (1303 perm/sec)   p_kst 4.125000e-04   p_cons 1.858360e-01   p_joint 7.161765e-04

Joint ci ratio: 1.251111e-01	ci left: 6.712525e-04	ci right 7.615368e-04	k: 980	n:1370000
Cons ci ratio: 7.010712e-03	ci left: 1.851527e-01	ci right 1.864560e-01	k: 254551	n:1370000
KS ci ratio: 1.647358e-01	ci left: 3.791058e-04	ci right 4.478525e-04	k: 565	n:1370000
CYP2J2   1370000 perm   1057 sec   (1297 perm/sec)   p_kst 4.124088e-04   p_cons 1.858036e-01   p_joint 7.153285e-04

Joint ci ratio: 1.245410e-01	ci left: 6.727065e-04	ci right 7.627436e-04	k: 989	n:1380000
Cons ci ratio: 6.985583e-03	ci left: 1.851412e-01	ci right 1.864398e-01	k: 256390	n:1380000
KS ci ratio: 1.644456e-01	ci left: 3.777482e-04	ci right 4.461162e-04	k: 567	n:1380000
CYP2J2   1380000 perm   1070 sec   (1290 perm/sec)   p_kst 4.108696e-04   p_cons 1.857899e-01   p_joint 7.166667e-04

Joint ci ratio: 1.249208e-01	ci left: 6.636848e-04	ci right 7.528053e-04	k: 983	n:1390000
Cons ci ratio: 6.960954e-03	ci left: 1.851199e-01	ci right 1.864137e-01	k: 258215	n:1390000
KS ci ratio: 1.640131e-01	ci left: 3.771001e-04	ci right 4.451536e-04	k: 570	n:1390000
CYP2J2   1390000 perm   1083 sec   (1284 perm/sec)   p_kst 4.100719e-04   p_cons 1.857662e-01   p_joint 7.071942e-04

Joint ci ratio: 1.244788e-01	ci left: 6.637882e-04	ci right 7.525840e-04	k: 990	n:1400000
Cons ci ratio: 6.936502e-03	ci left: 1.851025e-01	ci right 1.863916e-01	k: 260045	n:1400000
KS ci ratio: 1.634417e-01	ci left: 3.771466e-04	ci right 4.449480e-04	k: 574	n:1400000
CYP2J2   1400000 perm   1094 sec   (1279 perm/sec)   p_kst 4.100000e-04   p_cons 1.857464e-01   p_joint 7.071429e-04

Joint ci ratio: 1.241660e-01	ci left: 6.625163e-04	ci right 7.509029e-04	k: 995	n:1410000
Cons ci ratio: 6.911334e-03	ci left: 1.851278e-01	ci right 1.864125e-01	k: 261935	n:1410000
KS ci ratio: 1.632999e-01	ci left: 3.751520e-04	ci right 4.425306e-04	k: 575	n:1410000
CYP2J2   1410000 perm   1106 sec   (1275 perm/sec)   p_kst 4.078014e-04   p_cons 1.857695e-01   p_joint 7.056738e-04

Joint ci ratio: 1.237938e-01	ci left: 6.619450e-04	ci right 7.499712e-04	k: 1001	n:1420000
Cons ci ratio: 6.886085e-03	ci left: 1.851683e-01	ci right 1.864485e-01	k: 263847	n:1420000
KS ci ratio: 1.630173e-01	ci left: 3.738610e-04	ci right 4.408801e-04	k: 577	n:1420000
CYP2J2   1420000 perm   1118 sec   (1270 perm/sec)   p_kst 4.063380e-04   p_cons 1.858077e-01   p_joint 7.049296e-04

Joint ci ratio: 1.235475e-01	ci left: 6.600267e-04	ci right 7.476104e-04	k: 1005	n:1430000
Cons ci ratio: 6.862585e-03	ci left: 1.851432e-01	ci right 1.864189e-01	k: 265666	n:1430000
KS ci ratio: 1.625959e-01	ci left: 3.732590e-04	ci right 4.399804e-04	k: 580	n:1430000
CYP2J2   1430000 perm   1132 sec   (1263 perm/sec)   p_kst 4.055944e-04   p_cons 1.857804e-01   p_joint 7.027972e-04

Joint ci ratio: 1.229985e-01	ci left: 6.615004e-04	ci right 7.488612e-04	k: 1014	n:1440000
Cons ci ratio: 6.839309e-03	ci left: 1.851192e-01	ci right 1.863904e-01	k: 267486	n:1440000
KS ci ratio: 1.617627e-01	ci left: 3.746646e-04	ci right 4.412606e-04	k: 586	n:1440000
CYP2J2   1440000 perm   1146 sec   (1257 perm/sec)   p_kst 4.069444e-04   p_cons 1.857542e-01   p_joint 7.041667e-04

Joint ci ratio: 1.229382e-01	ci left: 6.576067e-04	ci right 7.444076e-04	k: 1015	n:1450000
Cons ci ratio: 6.815351e-03	ci left: 1.851362e-01	ci right 1.864030e-01	k: 269365	n:1450000
KS ci ratio: 1.610781e-01	ci left: 3.753897e-04	ci right 4.418048e-04	k: 591	n:1450000
CYP2J2   1450000 perm   1158 sec   (1252 perm/sec)   p_kst 4.075862e-04   p_cons 1.857690e-01   p_joint 7.000000e-04

Joint ci ratio: 1.225169e-01	ci left: 6.577499e-04	ci right 7.442506e-04	k: 1022	n:1460000
Cons ci ratio: 6.792643e-03	ci left: 1.851085e-01	ci right 1.863708e-01	k: 271179	n:1460000
KS ci ratio: 1.604021e-01	ci left: 3.761054e-04	ci right 4.423410e-04	k: 596	n:1460000
CYP2J2   1460000 perm   1170 sec   (1248 perm/sec)   p_kst 4.082192e-04   p_cons 1.857390e-01   p_joint 7.000000e-04

Joint ci ratio: 1.220998e-01	ci left: 6.578916e-04	ci right 7.440952e-04	k: 1029	n:1470000
Cons ci ratio: 6.769338e-03	ci left: 1.851179e-01	ci right 1.863759e-01	k: 273047	n:1470000
KS ci ratio: 1.598674e-01	ci left: 3.761589e-04	ci right 4.421620e-04	k: 600	n:1470000
CYP2J2   1470000 perm   1183 sec   (1243 perm/sec)   p_kst 4.081633e-04   p_cons 1.857463e-01   p_joint 7.000000e-04

Joint ci ratio: 1.219226e-01	ci left: 6.554115e-04	ci right 7.411564e-04	k: 1032	n:1480000
Cons ci ratio: 6.745864e-03	ci left: 1.851453e-01	ci right 1.863992e-01	k: 274942	n:1480000
KS ci ratio: 1.593380e-01	ci left: 3.762121e-04	ci right 4.419849e-04	k: 604	n:1480000
CYP2J2   1480000 perm   1195 sec   (1238 perm/sec)   p_kst 4.081081e-04   p_cons 1.857716e-01   p_joint 6.972973e-04

Joint ci ratio: 1.214532e-01	ci left: 6.562185e-04	ci right 7.417147e-04	k: 1040	n:1490000
Cons ci ratio: 6.722976e-03	ci left: 1.851570e-01	ci right 1.864066e-01	k: 276814	n:1490000
KS ci ratio: 1.588139e-01	ci left: 3.762648e-04	ci right 4.418099e-04	k: 608	n:1490000
CYP2J2   1490000 perm   1208 sec   (1234 perm/sec)   p_kst 4.080537e-04   p_cons 1.857812e-01   p_joint 6.979866e-04

Joint ci ratio: 1.208739e-01	ci left: 6.583084e-04	ci right 7.436385e-04	k: 1050	n:1500000
Cons ci ratio: 6.699817e-03	ci left: 1.851912e-01	ci right 1.864367e-01	k: 278720	n:1500000
KS ci ratio: 1.580372e-01	ci left: 3.775979e-04	ci right 4.430230e-04	k: 614	n:1500000
CYP2J2   1500000 perm   1220 sec   (1230 perm/sec)   p_kst 4.093333e-04   p_cons 1.858133e-01   p_joint 7.000000e-04

Joint ci ratio: 1.205303e-01	ci left: 6.578023e-04	ci right 7.428072e-04	k: 1056	n:1510000
Cons ci ratio: 6.676852e-03	ci left: 1.852269e-01	ci right 1.864684e-01	k: 280629	n:1510000
KS ci ratio: 1.576532e-01	ci left: 3.770055e-04	ci right 4.421542e-04	k: 617	n:1510000
CYP2J2   1510000 perm   1232 sec   (1225 perm/sec)   p_kst 4.086093e-04   p_cons 1.858470e-01   p_joint 6.993377e-04

Joint ci ratio: 1.200204e-01	ci left: 6.592175e-04	ci right 7.440194e-04	k: 1065	n:1520000
Cons ci ratio: 6.655048e-03	ci left: 1.852201e-01	ci right 1.864575e-01	k: 282474	n:1520000
KS ci ratio: 1.566424e-01	ci left: 3.795814e-04	ci right 4.447152e-04	k: 625	n:1520000
CYP2J2   1520000 perm   1245 sec   (1221 perm/sec)   p_kst 4.111842e-04   p_cons 1.858382e-01   p_joint 7.006579e-04

Joint ci ratio: 1.197400e-01	ci left: 6.580789e-04	ci right 7.425224e-04	k: 1070	n:1530000
Cons ci ratio: 6.633427e-03	ci left: 1.852146e-01	ci right 1.864480e-01	k: 284321	n:1530000
KS ci ratio: 1.561443e-01	ci left: 3.796126e-04	ci right 4.445252e-04	k: 629	n:1530000
CYP2J2   1530000 perm   1259 sec   (1215 perm/sec)   p_kst 4.111111e-04   p_cons 1.858307e-01   p_joint 6.993464e-04

Joint ci ratio: 1.192952e-01	ci left: 6.588452e-04	ci right 7.430509e-04	k: 1078	n:1540000
Cons ci ratio: 6.611519e-03	ci left: 1.852320e-01	ci right 1.864614e-01	k: 286203	n:1540000
KS ci ratio: 1.557739e-01	ci left: 3.790196e-04	ci right 4.436627e-04	k: 632	n:1540000
CYP2J2   1540000 perm   1274 sec   (1209 perm/sec)   p_kst 4.103896e-04   p_cons 1.858461e-01   p_joint 7.000000e-04

Joint ci ratio: 1.188554e-01	ci left: 6.596021e-04	ci right 7.435719e-04	k: 1086	n:1550000
Cons ci ratio: 6.589995e-03	ci left: 1.852414e-01	ci right 1.864668e-01	k: 288073	n:1550000
KS ci ratio: 1.552841e-01	ci left: 3.790545e-04	ci right 4.434813e-04	k: 636	n:1550000
CYP2J2   1550000 perm   1289 sec   (1203 perm/sec)   p_kst 4.103226e-04   p_cons 1.858535e-01   p_joint 7.006452e-04

Joint ci ratio: 1.184204e-01	ci left: 6.603500e-04	ci right 7.440858e-04	k: 1094	n:1560000
Cons ci ratio: 6.568471e-03	ci left: 1.852603e-01	ci right 1.864818e-01	k: 289958	n:1560000
KS ci ratio: 1.547988e-01	ci left: 3.790893e-04	ci right 4.433020e-04	k: 640	n:1560000
CYP2J2   1560000 perm   1303 sec   (1197 perm/sec)   p_kst 4.102564e-04   p_cons 1.858705e-01   p_joint 7.012821e-04

Joint ci ratio: 1.180973e-01	ci left: 6.598525e-04	ci right 7.432810e-04	k: 1100	n:1570000
Cons ci ratio: 6.547735e-03	ci left: 1.852523e-01	ci right 1.864699e-01	k: 291801	n:1570000
KS ci ratio: 1.544379e-01	ci left: 3.785116e-04	ci right 4.424632e-04	k: 643	n:1570000
CYP2J2   1570000 perm   1318 sec   (1191 perm/sec)   p_kst 4.095541e-04   p_cons 1.858605e-01   p_joint 7.006369e-04

Joint ci ratio: 1.176175e-01	ci left: 6.612045e-04	ci right 7.444407e-04	k: 1109	n:1580000
Cons ci ratio: 6.527140e-03	ci left: 1.852469e-01	ci right 1.864606e-01	k: 293648	n:1580000
KS ci ratio: 1.539605e-01	ci left: 3.785499e-04	ci right 4.422920e-04	k: 647	n:1580000
CYP2J2   1580000 perm   1333 sec   (1185 perm/sec)   p_kst 4.094937e-04   p_cons 1.858532e-01   p_joint 7.018987e-04

Joint ci ratio: 1.171959e-01	ci left: 6.619297e-04	ci right 7.449378e-04	k: 1117	n:1590000
Cons ci ratio: 6.506968e-03	ci left: 1.852309e-01	ci right 1.864407e-01	k: 295478	n:1590000
KS ci ratio: 1.537236e-01	ci left: 3.773785e-04	ci right 4.408166e-04	k: 649	n:1590000
CYP2J2   1590000 perm   1348 sec   (1179 perm/sec)   p_kst 4.081761e-04   p_cons 1.858352e-01   p_joint 7.025157e-04

Joint ci ratio: 1.175121e-01	ci left: 6.541526e-04	ci right 7.364221e-04	k: 1111	n:1600000
Cons ci ratio: 6.486580e-03	ci left: 1.852338e-01	ci right 1.864398e-01	k: 297338	n:1600000
KS ci ratio: 1.532528e-01	ci left: 3.774239e-04	ci right 4.406574e-04	k: 653	n:1600000
CYP2J2   1600000 perm   1364 sec   (1173 perm/sec)   p_kst 4.081250e-04   p_cons 1.858363e-01   p_joint 6.943750e-04

Joint ci ratio: 1.169871e-01	ci left: 6.561186e-04	ci right 7.382413e-04	k: 1121	n:1610000
Cons ci ratio: 6.466329e-03	ci left: 1.852392e-01	ci right 1.864415e-01	k: 299202	n:1610000
KS ci ratio: 1.529025e-01	ci left: 3.768716e-04	ci right 4.398551e-04	k: 656	n:1610000
CYP2J2   1610000 perm   1379 sec   (1167 perm/sec)   p_kst 4.074534e-04   p_cons 1.858398e-01   p_joint 6.962733e-04

Joint ci ratio: 1.165723e-01	ci left: 6.568625e-04	ci right 7.387667e-04	k: 1129	n:1620000
Cons ci ratio: 6.446201e-03	ci left: 1.852476e-01	ci right 1.864462e-01	k: 301071	n:1620000
KS ci ratio: 1.522090e-01	ci left: 3.781076e-04	ci right 4.409849e-04	k: 662	n:1620000
CYP2J2   1620000 perm   1394 sec   (1162 perm/sec)   p_kst 4.086420e-04   p_cons 1.858463e-01   p_joint 6.969136e-04

Joint ci ratio: 1.161618e-01	ci left: 6.575978e-04	ci right 7.392851e-04	k: 1137	n:1630000
Cons ci ratio: 6.426937e-03	ci left: 1.852240e-01	ci right 1.864188e-01	k: 302888	n:1630000
KS ci ratio: 1.516382e-01	ci left: 3.787388e-04	ci right 4.414634e-04	k: 667	n:1630000
CYP2J2   1630000 perm   1409 sec   (1157 perm/sec)   p_kst 4.092025e-04   p_cons 1.858209e-01   p_joint 6.975460e-04

Joint ci ratio: 1.156546e-01	ci left: 6.595089e-04	ci right 7.410515e-04	k: 1147	n:1640000
Cons ci ratio: 6.407819e-03	ci left: 1.852019e-01	ci right 1.863931e-01	k: 304707	n:1640000
KS ci ratio: 1.508498e-01	ci left: 3.805362e-04	ci right 4.432013e-04	k: 674	n:1640000
CYP2J2   1640000 perm   1425 sec   (1151 perm/sec)   p_kst 4.109756e-04   p_cons 1.857970e-01   p_joint 6.993902e-04

Joint ci ratio: 1.157558e-01	ci left: 6.543347e-04	ci right 7.353132e-04	k: 1145	n:1650000
Cons ci ratio: 6.389319e-03	ci left: 1.851590e-01	ci right 1.863464e-01	k: 306491	n:1650000
KS ci ratio: 1.502941e-01	ci left: 3.811461e-04	ci right 4.436596e-04	k: 679	n:1650000
CYP2J2   1650000 perm   1440 sec   (1146 perm/sec)   p_kst 4.115152e-04   p_cons 1.857521e-01   p_joint 6.939394e-04

Joint ci ratio: 1.153538e-01	ci left: 6.550729e-04	ci right 7.358421e-04	k: 1153	n:1660000
Cons ci ratio: 6.370673e-03	ci left: 1.851310e-01	ci right 1.863147e-01	k: 308299	n:1660000
KS ci ratio: 1.496353e-01	ci left: 3.823288e-04	ci right 4.447369e-04	k: 685	n:1660000
CYP2J2   1660000 perm   1456 sec   (1140 perm/sec)   p_kst 4.126506e-04   p_cons 1.857223e-01   p_joint 6.945783e-04

Joint ci ratio: 1.152542e-01	ci left: 6.523134e-04	ci right 7.326681e-04	k: 1155	n:1670000
Cons ci ratio: 6.352039e-03	ci left: 1.851105e-01	ci right 1.862906e-01	k: 310119	n:1670000
KS ci ratio: 1.496355e-01	ci left: 3.800394e-04	ci right 4.420738e-04	k: 685	n:1670000
CYP2J2   1670000 perm   1471 sec   (1135 perm/sec)   p_kst 4.101796e-04   p_cons 1.857000e-01   p_joint 6.916168e-04

Joint ci ratio: 1.149563e-01	ci left: 6.518991e-04	ci right 7.319812e-04	k: 1161	n:1680000
Cons ci ratio: 6.333355e-03	ci left: 1.851003e-01	ci right 1.862769e-01	k: 311956	n:1680000
KS ci ratio: 1.493094e-01	ci left: 3.794962e-04	ci right 4.412949e-04	k: 688	n:1680000
CYP2J2   1680000 perm   1486 sec   (1130 perm/sec)   p_kst 4.095238e-04   p_cons 1.856881e-01   p_joint 6.910714e-04

Joint ci ratio: 1.145136e-01	ci left: 6.532144e-04	ci right 7.331281e-04	k: 1170	n:1690000
Cons ci ratio: 6.314626e-03	ci left: 1.851004e-01	ci right 1.862735e-01	k: 313810	n:1690000
KS ci ratio: 1.488779e-01	ci left: 3.795292e-04	ci right 4.411388e-04	k: 692	n:1690000
CYP2J2   1690000 perm   1502 sec   (1126 perm/sec)   p_kst 4.094675e-04   p_cons 1.856864e-01   p_joint 6.923077e-04

Joint ci ratio: 1.160105e-01	ci left: 6.322332e-04	ci right 7.106605e-04	k: 1140	n:1700000
Cons ci ratio: 6.295485e-03	ci left: 1.851280e-01	ci right 1.862977e-01	k: 315711	n:1700000
KS ci ratio: 1.483437e-01	ci left: 3.801285e-04	ci right 4.415943e-04	k: 697	n:1700000
CYP2J2   1700000 perm   1517 sec   (1121 perm/sec)   p_kst 4.100000e-04   p_cons 1.857124e-01   p_joint 6.705882e-04

Joint ci ratio: 1.154552e-01	ci left: 6.347825e-04	ci right 7.131234e-04	k: 1151	n:1710000
Cons ci ratio: 6.277708e-03	ci left: 1.850981e-01	ci right 1.862643e-01	k: 317514	n:1710000
KS ci ratio: 1.479205e-01	ci left: 3.801580e-04	ci right 4.414377e-04	k: 701	n:1710000
CYP2J2   1710000 perm   1531 sec   (1117 perm/sec)   p_kst 4.099415e-04   p_cons 1.856807e-01   p_joint 6.730994e-04

Joint ci ratio: 1.157069e-01	ci left: 6.282689e-04	ci right 7.059865e-04	k: 1146	n:1720000
Cons ci ratio: 6.259189e-03	ci left: 1.851115e-01	ci right 1.862744e-01	k: 319391	n:1720000
KS ci ratio: 1.472923e-01	ci left: 3.813074e-04	ci right 4.424883e-04	k: 707	n:1720000
CYP2J2   1720000 perm   1545 sec   (1113 perm/sec)   p_kst 4.110465e-04   p_cons 1.856924e-01   p_joint 6.662791e-04

Joint ci ratio: 1.155058e-01	ci left: 6.268825e-04	ci right 7.042846e-04	k: 1150	n:1730000
Cons ci ratio: 6.241609e-03	ci left: 1.850873e-01	ci right 1.862467e-01	k: 321203	n:1730000
KS ci ratio: 1.469812e-01	ci left: 3.807735e-04	ci right 4.417285e-04	k: 710	n:1730000
CYP2J2   1730000 perm   1559 sec   (1110 perm/sec)   p_kst 4.104046e-04   p_cons 1.856665e-01   p_joint 6.647399e-04

Joint ci ratio: 1.153557e-01	ci left: 6.249541e-04	ci right 7.020110e-04	k: 1153	n:1740000
Cons ci ratio: 6.223064e-03	ci left: 1.851173e-01	ci right 1.862734e-01	k: 323109	n:1740000
KS ci ratio: 1.468781e-01	ci left: 3.791387e-04	ci right 4.397857e-04	k: 711	n:1740000
CYP2J2   1740000 perm   1573 sec   (1106 perm/sec)   p_kst 4.086207e-04   p_cons 1.856948e-01   p_joint 6.626437e-04

Joint ci ratio: 1.182629e-01	ci left: 5.903171e-04	ci right 6.650658e-04	k: 1097	n:1750000
Cons ci ratio: 6.205410e-03	ci left: 1.851115e-01	ci right 1.862644e-01	k: 324953	n:1750000
KS ci ratio: 1.463650e-01	ci left: 3.797246e-04	ci right 4.402345e-04	k: 716	n:1750000
CYP2J2   1750000 perm   1589 sec   (1101 perm/sec)   p_kst 4.091429e-04   p_cons 1.856874e-01   p_joint 6.268571e-04

Joint ci ratio: 1.181555e-01	ci left: 5.880657e-04	ci right 6.624570e-04	k: 1099	n:1760000
Cons ci ratio: 6.188336e-03	ci left: 1.850849e-01	ci right 1.862343e-01	k: 326760	n:1760000
KS ci ratio: 1.460598e-01	ci left: 3.792092e-04	ci right 4.395000e-04	k: 719	n:1760000
CYP2J2   1760000 perm   1606 sec   (1096 perm/sec)   p_kst 4.085227e-04   p_cons 1.856591e-01   p_joint 6.244318e-04

Joint ci ratio: 1.178879e-01	ci left: 5.874848e-04	ci right 6.616226e-04	k: 1104	n:1770000
Cons ci ratio: 6.170468e-03	ci left: 1.851042e-01	ci right 1.862505e-01	k: 328648	n:1770000
KS ci ratio: 1.456558e-01	ci left: 3.792442e-04	ci right 4.393593e-04	k: 723	n:1770000
CYP2J2   1770000 perm   1623 sec   (1091 perm/sec)   p_kst 4.084746e-04   p_cons 1.856768e-01   p_joint 6.237288e-04

Joint ci ratio: 1.194116e-01	ci left: 5.689205e-04	ci right 6.417090e-04	k: 1076	n:1780000
Cons ci ratio: 6.153085e-03	ci left: 1.851071e-01	ci right 1.862501e-01	k: 330507	n:1780000
KS ci ratio: 1.454551e-01	ci left: 3.781963e-04	ci right 4.380555e-04	k: 725	n:1780000
CYP2J2   1780000 perm   1640 sec   (1086 perm/sec)   p_kst 4.073034e-04   p_cons 1.856781e-01   p_joint 6.044944e-04

Joint ci ratio: 1.190254e-01	ci left: 5.695362e-04	ci right 6.421512e-04	k: 1083	n:1790000
Cons ci ratio: 6.135135e-03	ci left: 1.851451e-01	ci right 1.862850e-01	k: 332429	n:1790000
KS ci ratio: 1.450561e-01	ci left: 3.782369e-04	ci right 4.379240e-04	k: 729	n:1790000
CYP2J2   1790000 perm   1657 sec   (1081 perm/sec)   p_kst 4.072626e-04   p_cons 1.857145e-01   p_joint 6.050279e-04

Joint ci ratio: 1.188065e-01	ci left: 5.685282e-04	ci right 6.408720e-04	k: 1087	n:1800000
Cons ci ratio: 6.118385e-03	ci left: 1.851310e-01	ci right 1.862678e-01	k: 334258	n:1800000
KS ci ratio: 1.446603e-01	ci left: 3.782773e-04	ci right 4.377938e-04	k: 733	n:1800000
CYP2J2   1800000 perm   1674 sec   (1075 perm/sec)   p_kst 4.072222e-04   p_cons 1.856989e-01   p_joint 6.038889e-04

Joint ci ratio: 1.388229e-01	ci left: 4.097606e-04	ci right 4.714141e-04	k: 796	n:1810000
Cons ci ratio: 6.101694e-03	ci left: 1.851210e-01	ci right 1.862546e-01	k: 336094	n:1810000
KS ci ratio: 1.530225e-01	ci left: 3.346964e-04	ci right 3.906794e-04	k: 655	n:1810000
CYP2J2   1810000 perm   1691 sec   (1070 perm/sec)   p_kst 3.618785e-04   p_cons 1.856873e-01   p_joint 4.397790e-04

Joint ci ratio: 1.383895e-01	ci left: 4.101612e-04	ci right 4.716664e-04	k: 801	n:1820000
Cons ci ratio: 6.085283e-03	ci left: 1.851040e-01	ci right 1.862344e-01	k: 337917	n:1820000
KS ci ratio: 1.525581e-01	ci left: 3.349712e-04	ci right 3.908146e-04	k: 659	n:1820000
CYP2J2   1820000 perm   1708 sec   (1065 perm/sec)   p_kst 3.620879e-04   p_cons 1.856687e-01   p_joint 4.401099e-04

Joint ci ratio: 1.378746e-01	ci left: 4.110852e-04	ci right 4.724809e-04	k: 807	n:1830000
Cons ci ratio: 6.068674e-03	ci left: 1.851035e-01	ci right 1.862308e-01	k: 339770	n:1830000
KS ci ratio: 1.523275e-01	ci left: 3.341920e-04	ci right 3.898135e-04	k: 661	n:1830000
CYP2J2   1830000 perm   1725 sec   (1061 perm/sec)   p_kst 3.612022e-04   p_cons 1.856667e-01   p_joint 4.409836e-04

Joint ci ratio: 1.375346e-01	ci left: 4.109501e-04	ci right 4.721618e-04	k: 811	n:1840000
Cons ci ratio: 6.051624e-03	ci left: 1.851318e-01	ci right 1.862561e-01	k: 341676	n:1840000
KS ci ratio: 1.518694e-01	ci left: 3.344669e-04	ci right 3.899516e-04	k: 665	n:1840000
CYP2J2   1840000 perm   1743 sec   (1056 perm/sec)   p_kst 3.614130e-04   p_cons 1.856935e-01   p_joint 4.407609e-04

Joint ci ratio: 1.373657e-01	ci left: 4.097726e-04	ci right 4.707279e-04	k: 813	n:1850000
Cons ci ratio: 6.034846e-03	ci left: 1.851534e-01	ci right 1.862746e-01	k: 343570	n:1850000
KS ci ratio: 1.515285e-01	ci left: 3.342190e-04	ci right 3.895269e-04	k: 668	n:1850000
CYP2J2   1850000 perm   1760 sec   (1051 perm/sec)   p_kst 3.610811e-04   p_cons 1.857135e-01   p_joint 4.394595e-04

Joint ci ratio: 1.371133e-01	ci left: 4.091271e-04	ci right 4.698653e-04	k: 816	n:1860000
Cons ci ratio: 6.018208e-03	ci left: 1.851747e-01	ci right 1.862930e-01	k: 345464	n:1860000
KS ci ratio: 1.509654e-01	ci left: 3.350086e-04	ci right 3.902224e-04	k: 673	n:1860000
CYP2J2   1860000 perm   1778 sec   (1046 perm/sec)   p_kst 3.618280e-04   p_cons 1.857333e-01   p_joint 4.387097e-04

Joint ci ratio: 1.380463e-01	ci left: 4.012592e-04	ci right 4.612681e-04	k: 805	n:1870000
Cons ci ratio: 6.002077e-03	ci left: 1.851771e-01	ci right 1.862924e-01	k: 347323	n:1870000
KS ci ratio: 1.501873e-01	ci left: 3.368194e-04	ci right 3.920199e-04	k: 680	n:1870000
CYP2J2   1870000 perm   1796 sec   (1041 perm/sec)   p_kst 3.636364e-04   p_cons 1.857342e-01   p_joint 4.304813e-04

Joint ci ratio: 1.374506e-01	ci left: 4.027200e-04	ci right 4.626662e-04	k: 812	n:1880000
Cons ci ratio: 5.986054e-03	ci left: 1.851805e-01	ci right 1.862928e-01	k: 349184	n:1880000
KS ci ratio: 1.496389e-01	ci left: 3.375877e-04	ci right 3.926939e-04	k: 685	n:1880000
CYP2J2   1880000 perm   1814 sec   (1037 perm/sec)   p_kst 3.643617e-04   p_cons 1.857362e-01   p_joint 4.319149e-04

Joint ci ratio: 1.372820e-01	ci left: 4.016110e-04	ci right 4.613128e-04	k: 814	n:1890000
Cons ci ratio: 5.970096e-03	ci left: 1.851870e-01	ci right 1.862965e-01	k: 351051	n:1890000
KS ci ratio: 1.492046e-01	ci left: 3.378388e-04	ci right 3.928117e-04	k: 689	n:1890000
CYP2J2   1890000 perm   1831 sec   (1032 perm/sec)   p_kst 3.645503e-04   p_cons 1.857413e-01   p_joint 4.306878e-04

Joint ci ratio: 1.371979e-01	ci left: 4.000055e-04	ci right 4.594292e-04	k: 815	n:1900000
Cons ci ratio: 5.954639e-03	ci left: 1.851746e-01	ci right 1.862811e-01	k: 352882	n:1900000
KS ci ratio: 1.492047e-01	ci left: 3.360606e-04	ci right 3.907443e-04	k: 689	n:1900000
CYP2J2   1900000 perm   1849 sec   (1028 perm/sec)   p_kst 3.626316e-04   p_cons 1.857274e-01   p_joint 4.289474e-04

Joint ci ratio: 1.368629e-01	ci left: 3.999337e-04	ci right 4.591898e-04	k: 819	n:1910000
Cons ci ratio: 5.939054e-03	ci left: 1.851749e-01	ci right 1.862784e-01	k: 354737	n:1910000
KS ci ratio: 1.486670e-01	ci left: 3.368214e-04	ci right 3.914138e-04	k: 694	n:1910000
CYP2J2   1910000 perm   1866 sec   (1023 perm/sec)   p_kst 3.633508e-04   p_cons 1.857262e-01   p_joint 4.287958e-04

Joint ci ratio: 1.366133e-01	ci left: 3.993597e-04	ci right 4.584141e-04	k: 822	n:1920000
Cons ci ratio: 5.923478e-03	ci left: 1.851809e-01	ci right 1.862815e-01	k: 356603	n:1920000
KS ci ratio: 1.483472e-01	ci left: 3.365716e-04	ci right 3.909957e-04	k: 697	n:1920000
CYP2J2   1920000 perm   1884 sec   (1019 perm/sec)   p_kst 3.630208e-04   p_cons 1.857307e-01   p_joint 4.281250e-04

Joint ci ratio: 1.368632e-01	ci left: 3.957892e-04	ci right 4.544314e-04	k: 819	n:1930000
Cons ci ratio: 5.907802e-03	ci left: 1.851982e-01	ci right 1.862960e-01	k: 358491	n:1930000
KS ci ratio: 1.479239e-01	ci left: 3.368234e-04	ci right 3.911191e-04	k: 701	n:1930000
CYP2J2   1930000 perm   1902 sec   (1015 perm/sec)   p_kst 3.632124e-04   p_cons 1.857466e-01   p_joint 4.243523e-04

Joint ci ratio: 1.362827e-01	ci left: 3.972341e-04	ci right 4.558205e-04	k: 826	n:1940000
Cons ci ratio: 5.892028e-03	ci left: 1.852266e-01	ci right 1.863217e-01	k: 360401	n:1940000
KS ci ratio: 1.475043e-01	ci left: 3.370729e-04	ci right 3.912410e-04	k: 705	n:1940000
CYP2J2   1940000 perm   1920 sec   (1010 perm/sec)   p_kst 3.634021e-04   p_cons 1.857737e-01   p_joint 4.257732e-04

Joint ci ratio: 1.386512e-01	ci left: 3.813316e-04	ci right 4.386307e-04	k: 798	n:1950000
Cons ci ratio: 5.876998e-03	ci left: 1.852231e-01	ci right 1.863153e-01	k: 362249	n:1950000
KS ci ratio: 1.471919e-01	ci left: 3.368260e-04	ci right 3.908298e-04	k: 708	n:1950000
CYP2J2   1950000 perm   1939 sec   (1006 perm/sec)   p_kst 3.630769e-04   p_cons 1.857687e-01   p_joint 4.092308e-04

Joint ci ratio: 1.383054e-01	ci left: 3.813561e-04	ci right 4.385043e-04	k: 802	n:1960000
Cons ci ratio: 5.862191e-03	ci left: 1.852139e-01	ci right 1.863033e-01	k: 364086	n:1960000
KS ci ratio: 1.467784e-01	ci left: 3.370733e-04	ci right 3.909516e-04	k: 712	n:1960000
CYP2J2   1960000 perm   1956 sec   (1002 perm/sec)   p_kst 3.632653e-04   p_cons 1.857582e-01   p_joint 4.091837e-04

Joint ci ratio: 1.383056e-01	ci left: 3.794203e-04	ci right 4.362784e-04	k: 802	n:1970000
Cons ci ratio: 5.847780e-03	ci left: 1.851901e-01	ci right 1.862768e-01	k: 365894	n:1970000
KS ci ratio: 1.461646e-01	ci left: 3.382963e-04	ci right 3.921243e-04	k: 718	n:1970000
CYP2J2   1970000 perm   1975 sec   (998 perm/sec)   p_kst 3.644670e-04   p_cons 1.857330e-01   p_joint 4.071066e-04

Joint ci ratio: 1.378769e-01	ci left: 3.799420e-04	ci right 4.366874e-04	k: 807	n:1980000
Cons ci ratio: 5.833241e-03	ci left: 1.851787e-01	ci right 1.862626e-01	k: 367726	n:1980000
KS ci ratio: 1.458607e-01	ci left: 3.380476e-04	ci right 3.917143e-04	k: 721	n:1980000
CYP2J2   1980000 perm   1993 sec   (993 perm/sec)   p_kst 3.641414e-04   p_cons 1.857202e-01   p_joint 4.075758e-04

Joint ci ratio: 1.377067e-01	ci left: 3.790031e-04	ci right 4.355327e-04	k: 809	n:1990000
Cons ci ratio: 5.819013e-03	ci left: 1.851569e-01	ci right 1.862380e-01	k: 369537	n:1990000
KS ci ratio: 1.455586e-01	ci left: 3.378014e-04	ci right 3.913083e-04	k: 724	n:1990000
CYP2J2   1990000 perm   2012 sec   (989 perm/sec)   p_kst 3.638191e-04   p_cons 1.856970e-01   p_joint 4.065327e-04

Joint ci ratio: 1.372836e-01	ci left: 3.795221e-04	ci right 4.359409e-04	k: 814	n:2000000
Cons ci ratio: 5.804601e-03	ci left: 1.851503e-01	ci right 1.862286e-01	k: 371378	n:2000000
KS ci ratio: 1.453583e-01	ci left: 3.370760e-04	ci right 3.903882e-04	k: 726	n:2000000
CYP2J2   2000000 perm   2031 sec   (985 perm/sec)   p_kst 3.630000e-04   p_cons 1.856890e-01   p_joint 4.070000e-04

Joint ci ratio: 1.373681e-01	ci left: 3.771535e-04	ci right 4.332575e-04	k: 813	n:2010000
Cons ci ratio: 5.790419e-03	ci left: 1.851373e-01	ci right 1.862129e-01	k: 373206	n:2010000
KS ci ratio: 1.450593e-01	ci left: 3.368373e-04	ci right 3.899927e-04	k: 729	n:2010000
CYP2J2   2010000 perm   2049 sec   (981 perm/sec)   p_kst 3.626866e-04   p_cons 1.856746e-01   p_joint 4.044776e-04

Joint ci ratio: 1.368645e-01	ci left: 3.781548e-04	ci right 4.341848e-04	k: 819	n:2020000
Cons ci ratio: 5.776189e-03	ci left: 1.851323e-01	ci right 1.862052e-01	k: 375050	n:2020000
KS ci ratio: 1.444668e-01	ci left: 3.380325e-04	ci right 3.911398e-04	k: 735	n:2020000
CYP2J2   2020000 perm   2068 sec   (977 perm/sec)   p_kst 3.638614e-04   p_cons 1.856683e-01   p_joint 4.054455e-04

Joint ci ratio: 1.366980e-01	ci left: 3.772435e-04	ci right 4.330649e-04	k: 821	n:2030000
Cons ci ratio: 5.761979e-03	ci left: 1.851318e-01	ci right 1.862021e-01	k: 376903	n:2030000
KS ci ratio: 1.441732e-01	ci left: 3.377918e-04	ci right 3.907442e-04	k: 738	n:2030000
CYP2J2   2030000 perm   2086 sec   (973 perm/sec)   p_kst 3.635468e-04   p_cons 1.856665e-01   p_joint 4.044335e-04

Joint ci ratio: 1.363666e-01	ci left: 3.772881e-04	ci right 4.329697e-04	k: 825	n:2040000
Cons ci ratio: 5.747985e-03	ci left: 1.851255e-01	ci right 1.861931e-01	k: 378744	n:2040000
KS ci ratio: 1.437846e-01	ci left: 3.380261e-04	ci right 3.908601e-04	k: 742	n:2040000
CYP2J2   2040000 perm   2105 sec   (969 perm/sec)   p_kst 3.637255e-04   p_cons 1.856588e-01   p_joint 4.044118e-04

Joint ci ratio: 1.368649e-01	ci left: 3.726208e-04	ci right 4.278310e-04	k: 819	n:2050000
Cons ci ratio: 5.733889e-03	ci left: 1.851299e-01	ci right 1.861949e-01	k: 380607	n:2050000
KS ci ratio: 1.436881e-01	ci left: 3.368475e-04	ci right 3.894589e-04	k: 743	n:2050000
CYP2J2   2050000 perm   2124 sec   (965 perm/sec)   p_kst 3.624390e-04   p_cons 1.856620e-01   p_joint 3.995122e-04

Joint ci ratio: 1.365323e-01	ci left: 3.726873e-04	ci right 4.277622e-04	k: 823	n:2060000
Cons ci ratio: 5.719410e-03	ci left: 1.851600e-01	ci right 1.862225e-01	k: 382523	n:2060000
KS ci ratio: 1.434954e-01	ci left: 3.361483e-04	ci right 3.885740e-04	k: 745	n:2060000
CYP2J2   2060000 perm   2143 sec   (961 perm/sec)   p_kst 3.616505e-04   p_cons 1.856908e-01   p_joint 3.995146e-04

Joint ci ratio: 1.360379e-01	ci left: 3.736866e-04	ci right 4.286930e-04	k: 829	n:2070000
Cons ci ratio: 5.705723e-03	ci left: 1.851536e-01	ci right 1.862135e-01	k: 384364	n:2070000
KS ci ratio: 1.432077e-01	ci left: 3.359216e-04	ci right 3.881981e-04	k: 748	n:2070000
CYP2J2   2070000 perm   2162 sec   (958 perm/sec)   p_kst 3.613527e-04   p_cons 1.856831e-01   p_joint 4.004831e-04

Joint ci ratio: 1.357927e-01	ci left: 3.732833e-04	ci right 4.281233e-04	k: 832	n:2080000
Cons ci ratio: 5.691998e-03	ci left: 1.851544e-01	ci right 1.862118e-01	k: 386220	n:2080000
KS ci ratio: 1.429218e-01	ci left: 3.356973e-04	ci right 3.878256e-04	k: 751	n:2080000
CYP2J2   2080000 perm   2181 sec   (954 perm/sec)   p_kst 3.610577e-04   p_cons 1.856827e-01   p_joint 4.000000e-04

Joint ci ratio: 1.355489e-01	ci left: 3.728839e-04	ci right 4.275590e-04	k: 835	n:2090000
Cons ci ratio: 5.678121e-03	ci left: 1.851687e-01	ci right 1.862236e-01	k: 388104	n:2090000
KS ci ratio: 1.427322e-01	ci left: 3.350138e-04	ci right 3.869611e-04	k: 753	n:2090000
CYP2J2   2090000 perm   2200 sec   (950 perm/sec)   p_kst 3.602871e-04   p_cons 1.856957e-01   p_joint 3.995215e-04

Joint ci ratio: 1.354680e-01	ci left: 3.715683e-04	ci right 4.260154e-04	k: 836	n:2100000
Cons ci ratio: 5.664451e-03	ci left: 1.851771e-01	ci right 1.862295e-01	k: 389976	n:2100000
KS ci ratio: 1.421676e-01	ci left: 3.361739e-04	ci right 3.880774e-04	k: 759	n:2100000
CYP2J2   2100000 perm   2219 sec   (946 perm/sec)   p_kst 3.614286e-04   p_cons 1.857029e-01   p_joint 3.980952e-04

Joint ci ratio: 1.411495e-01	ci left: 3.396092e-04	ci right 3.916360e-04	k: 770	n:2110000
Cons ci ratio: 5.650535e-03	ci left: 1.852039e-01	ci right 1.862538e-01	k: 391887	n:2110000
KS ci ratio: 1.421677e-01	ci left: 3.345806e-04	ci right 3.862381e-04	k: 759	n:2110000
CYP2J2   2110000 perm   2238 sec   (943 perm/sec)   p_kst 3.597156e-04   p_cons 1.857284e-01   p_joint 3.649289e-04

Joint ci ratio: 1.406940e-01	ci left: 3.402826e-04	ci right 3.922302e-04	k: 775	n:2120000
Cons ci ratio: 5.637379e-03	ci left: 1.851951e-01	ci right 1.862425e-01	k: 393723	n:2120000
KS ci ratio: 1.419811e-01	ci left: 3.339123e-04	ci right 3.853932e-04	k: 761	n:2120000
CYP2J2   2120000 perm   2258 sec   (939 perm/sec)   p_kst 3.589623e-04   p_cons 1.857184e-01   p_joint 3.655660e-04

Joint ci ratio: 1.419812e-01	ci left: 3.323446e-04	ci right 3.835839e-04	k: 761	n:2130000
Cons ci ratio: 5.623896e-03	ci left: 1.852089e-01	ci right 1.862539e-01	k: 395607	n:2130000
KS ci ratio: 1.416099e-01	ci left: 3.341559e-04	ci right 3.855283e-04	k: 765	n:2130000
CYP2J2   2130000 perm   2278 sec   (935 perm/sec)   p_kst 3.591549e-04   p_cons 1.857310e-01   p_joint 3.572770e-04

Joint ci ratio: 1.416100e-01	ci left: 3.325944e-04	ci right 3.837268e-04	k: 765	n:2140000
Cons ci ratio: 5.611143e-03	ci left: 1.851885e-01	ci right 1.862310e-01	k: 397418	n:2140000
KS ci ratio: 1.412415e-01	ci left: 3.343975e-04	ci right 3.856621e-04	k: 769	n:2140000
CYP2J2   2140000 perm   2297 sec   (931 perm/sec)   p_kst 3.593458e-04   p_cons 1.857093e-01   p_joint 3.574766e-04

Joint ci ratio: 1.411500e-01	ci left: 3.332908e-04	ci right 3.843498e-04	k: 770	n:2150000
Cons ci ratio: 5.598329e-03	ci left: 1.851762e-01	ci right 1.862163e-01	k: 399246	n:2150000
KS ci ratio: 1.408761e-01	ci left: 3.346369e-04	ci right 3.857944e-04	k: 773	n:2150000
CYP2J2   2150000 perm   2317 sec   (928 perm/sec)   p_kst 3.595349e-04   p_cons 1.856958e-01   p_joint 3.581395e-04

Joint ci ratio: 1.407853e-01	ci left: 3.335343e-04	ci right 3.844876e-04	k: 774	n:2160000
Cons ci ratio: 5.584935e-03	ci left: 1.852001e-01	ci right 1.862378e-01	k: 401152	n:2160000
KS ci ratio: 1.405135e-01	ci left: 3.348744e-04	ci right 3.859253e-04	k: 777	n:2160000
CYP2J2   2160000 perm   2337 sec   (924 perm/sec)   p_kst 3.597222e-04   p_cons 1.857185e-01   p_joint 3.583333e-04

Joint ci ratio: 1.393537e-01	ci left: 3.391123e-04	ci right 3.903471e-04	k: 790	n:2170000
Cons ci ratio: 5.487635e-03	ci left: 1.898580e-01	ci right 1.909032e-01	k: 413125	n:2170000
KS ci ratio: 1.403333e-01	ci left: 3.342204e-04	ci right 3.851008e-04	k: 779	n:2170000
CYP2J2   2170000 perm   2357 sec   (921 perm/sec)   p_kst 3.589862e-04   p_cons 1.903802e-01   p_joint 3.640553e-04

Joint ci ratio: 1.390902e-01	ci left: 3.388849e-04	ci right 3.899806e-04	k: 793	n:2180000
Cons ci ratio: 5.475432e-03	ci left: 1.898368e-01	ci right 1.908796e-01	k: 414980	n:2180000
KS ci ratio: 1.401537e-01	ci left: 3.335725e-04	ci right 3.842839e-04	k: 781	n:2180000
CYP2J2   2180000 perm   2377 sec   (917 perm/sec)   p_kst 3.582569e-04   p_cons 1.903578e-01   p_joint 3.637615e-04

Joint ci ratio: 1.404236e-01	ci left: 3.307276e-04	ci right 3.811113e-04	k: 778	n:2190000
Cons ci ratio: 5.463156e-03	ci left: 1.898245e-01	ci right 1.908649e-01	k: 416854	n:2190000
KS ci ratio: 1.396191e-01	ci left: 3.346932e-04	ci right 3.853647e-04	k: 787	n:2190000
CYP2J2   2190000 perm   2397 sec   (913 perm/sec)   p_kst 3.593607e-04   p_cons 1.903443e-01   p_joint 3.552511e-04

Joint ci ratio: 1.403336e-01	ci left: 3.296628e-04	ci right 3.798495e-04	k: 779	n:2200000
Cons ci ratio: 5.450930e-03	ci left: 1.898142e-01	ci right 1.908521e-01	k: 418732	n:2200000
KS ci ratio: 1.392660e-01	ci left: 3.349267e-04	ci right 3.854946e-04	k: 791	n:2200000
CYP2J2   2200000 perm   2417 sec   (910 perm/sec)   p_kst 3.595455e-04   p_cons 1.903327e-01   p_joint 3.540909e-04

Joint ci ratio: 1.401541e-01	ci left: 3.290444e-04	ci right 3.790675e-04	k: 781	n:2210000
Cons ci ratio: 5.438690e-03	ci left: 1.898093e-01	ci right 1.908449e-01	k: 420622	n:2210000
KS ci ratio: 1.389157e-01	ci left: 3.351581e-04	ci right 3.856232e-04	k: 795	n:2210000
CYP2J2   2210000 perm   2438 sec   (907 perm/sec)   p_kst 3.597285e-04   p_cons 1.903267e-01   p_joint 3.533937e-04

Joint ci ratio: 1.400646e-01	ci left: 3.279968e-04	ci right 3.778262e-04	k: 782	n:2220000
Cons ci ratio: 5.426476e-03	ci left: 1.898077e-01	ci right 1.908409e-01	k: 422519	n:2220000
KS ci ratio: 1.387415e-01	ci left: 3.345180e-04	ci right 3.848184e-04	k: 797	n:2220000
CYP2J2   2220000 perm   2458 sec   (903 perm/sec)   p_kst 3.590090e-04   p_cons 1.903239e-01   p_joint 3.522523e-04

Joint ci ratio: 1.397082e-01	ci left: 3.282569e-04	ci right 3.779884e-04	k: 786	n:2230000
Cons ci ratio: 5.414581e-03	ci left: 1.897926e-01	ci right 1.908235e-01	k: 424386	n:2230000
KS ci ratio: 1.382228e-01	ci left: 3.356153e-04	ci right 3.858764e-04	k: 803	n:2230000
CYP2J2   2230000 perm   2477 sec   (900 perm/sec)   p_kst 3.600897e-04   p_cons 1.903076e-01   p_joint 3.524664e-04

Joint ci ratio: 1.400649e-01	ci left: 3.250682e-04	ci right 3.744528e-04	k: 782	n:2240000
Cons ci ratio: 5.402224e-03	ci left: 1.898084e-01	ci right 1.908370e-01	k: 426322	n:2240000
KS ci ratio: 1.380512e-01	ci left: 3.349790e-04	ci right 3.850775e-04	k: 805	n:2240000
CYP2J2   2240000 perm   2495 sec   (898 perm/sec)   p_kst 3.593750e-04   p_cons 1.903223e-01   p_joint 3.491071e-04

Joint ci ratio: 1.399756e-01	ci left: 3.240524e-04	ci right 3.732486e-04	k: 783	n:2250000
Cons ci ratio: 5.390511e-03	ci left: 1.897922e-01	ci right 1.908184e-01	k: 428186	n:2250000
KS ci ratio: 1.378803e-01	ci left: 3.343484e-04	ci right 3.842856e-04	k: 807	n:2250000
CYP2J2   2250000 perm   2513 sec   (895 perm/sec)   p_kst 3.586667e-04   p_cons 1.903049e-01   p_joint 3.480000e-04

Joint ci ratio: 1.397085e-01	ci left: 3.238995e-04	ci right 3.729709e-04	k: 786	n:2260000
Cons ci ratio: 5.378757e-03	ci left: 1.897827e-01	ci right 1.908066e-01	k: 430065	n:2260000
KS ci ratio: 1.374556e-01	ci left: 3.350052e-04	ci right 3.848737e-04	k: 812	n:2260000
CYP2J2   2260000 perm   2531 sec   (893 perm/sec)   p_kst 3.592920e-04   p_cons 1.902942e-01   p_joint 3.477876e-04

Joint ci ratio: 1.395314e-01	ci left: 3.233229e-04	ci right 3.722397e-04	k: 788	n:2270000
Cons ci ratio: 5.367050e-03	ci left: 1.897750e-01	ci right 1.907967e-01	k: 431948	n:2270000
KS ci ratio: 1.371187e-01	ci left: 3.352310e-04	ci right 3.850009e-04	k: 816	n:2270000
CYP2J2   2270000 perm   2549 sec   (891 perm/sec)   p_kst 3.594714e-04   p_cons 1.902855e-01   p_joint 3.471366e-04

Joint ci ratio: 1.443717e-01	ci left: 2.999073e-04	ci right 3.469911e-04	k: 736	n:2280000
Cons ci ratio: 5.355365e-03	ci left: 1.897705e-01	ci right 1.907899e-01	k: 433838	n:2280000
KS ci ratio: 1.365350e-01	ci left: 3.367258e-04	ci right 3.864874e-04	k: 823	n:2280000
CYP2J2   2280000 perm   2567 sec   (888 perm/sec)   p_kst 3.609649e-04   p_cons 1.902798e-01   p_joint 3.228070e-04

Joint ci ratio: 1.435943e-01	ci left: 3.019653e-04	ci right 3.490951e-04	k: 744	n:2290000
Cons ci ratio: 5.344188e-03	ci left: 1.897412e-01	ci right 1.907583e-01	k: 435671	n:2290000
KS ci ratio: 1.360405e-01	ci left: 3.377861e-04	ci right 3.875091e-04	k: 829	n:2290000
CYP2J2   2290000 perm   2588 sec   (885 perm/sec)   p_kst 3.620087e-04   p_cons 1.902493e-01   p_joint 3.248908e-04

Joint ci ratio: 1.434981e-01	ci left: 3.010715e-04	ci right 3.480277e-04	k: 745	n:2300000
Cons ci ratio: 5.332471e-03	ci left: 1.897473e-01	ci right 1.907622e-01	k: 437585	n:2300000
KS ci ratio: 1.357953e-01	ci left: 3.375775e-04	ci right 3.871729e-04	k: 832	n:2300000
CYP2J2   2300000 perm   2609 sec   (882 perm/sec)   p_kst 3.617391e-04   p_cons 1.902543e-01   p_joint 3.239130e-04

Joint ci ratio: 1.431149e-01	ci left: 3.014377e-04	ci right 3.483147e-04	k: 749	n:2310000
Cons ci ratio: 5.320569e-03	ci left: 1.897685e-01	ci right 1.907812e-01	k: 439534	n:2310000
KS ci ratio: 1.357140e-01	ci left: 3.365343e-04	ci right 3.859445e-04	k: 833	n:2310000
CYP2J2   2310000 perm   2630 sec   (878 perm/sec)   p_kst 3.606061e-04   p_cons 1.902745e-01   p_joint 3.242424e-04

Joint ci ratio: 1.429245e-01	ci left: 3.009696e-04	ci right 3.477062e-04	k: 751	n:2320000
Cons ci ratio: 5.309482e-03	ci left: 1.897468e-01	ci right 1.907574e-01	k: 441384	n:2320000
KS ci ratio: 1.353089e-01	ci left: 3.371658e-04	ci right 3.865091e-04	k: 838	n:2320000
CYP2J2   2320000 perm   2651 sec   (875 perm/sec)   p_kst 3.612069e-04   p_cons 1.902517e-01   p_joint 3.237069e-04

Joint ci ratio: 1.445685e-01	ci left: 2.926441e-04	ci right 3.386557e-04	k: 734	n:2330000
Cons ci ratio: 5.298353e-03	ci left: 1.897318e-01	ci right 1.907402e-01	k: 443249	n:2330000
KS ci ratio: 1.351480e-01	ci left: 3.365481e-04	ci right 3.857377e-04	k: 840	n:2330000
CYP2J2   2330000 perm   2673 sec   (872 perm/sec)   p_kst 3.605150e-04   p_cons 1.902356e-01   p_joint 3.150215e-04

Joint ci ratio: 1.443723e-01	ci left: 2.922173e-04	ci right 3.380940e-04	k: 736	n:2340000
Cons ci ratio: 5.286648e-03	ci left: 1.897545e-01	ci right 1.907608e-01	k: 445202	n:2340000
KS ci ratio: 1.349076e-01	ci left: 3.363486e-04	ci right 3.854146e-04	k: 843	n:2340000
CYP2J2   2340000 perm   2694 sec   (868 perm/sec)   p_kst 3.602564e-04   p_cons 1.902573e-01   p_joint 3.145299e-04

Joint ci ratio: 1.441768e-01	ci left: 2.917941e-04	ci right 3.375371e-04	k: 738	n:2350000
Cons ci ratio: 5.275239e-03	ci left: 1.897643e-01	ci right 1.907684e-01	k: 447125	n:2350000
KS ci ratio: 1.345890e-01	ci left: 3.365621e-04	ci right 3.855340e-04	k: 847	n:2350000
CYP2J2   2350000 perm   2716 sec   (865 perm/sec)   p_kst 3.604255e-04   p_cons 1.902660e-01   p_joint 3.140426e-04

Joint ci ratio: 1.440794e-01	ci left: 2.909661e-04	ci right 3.365459e-04	k: 739	n:2360000
Cons ci ratio: 5.264497e-03	ci left: 1.897392e-01	ci right 1.907412e-01	k: 448966	n:2360000
KS ci ratio: 1.342727e-01	ci left: 3.367739e-04	ci right 3.856522e-04	k: 851	n:2360000
CYP2J2   2360000 perm   2735 sec   (863 perm/sec)   p_kst 3.605932e-04   p_cons 1.902398e-01   p_joint 3.131356e-04

Joint ci ratio: 1.058766e-01	ci left: 5.474483e-04	ci right 6.090569e-04	k: 1369	n:2370000
Cons ci ratio: 5.253526e-03	ci left: 1.897317e-01	ci right 1.907315e-01	k: 450848	n:2370000
KS ci ratio: 1.341154e-01	ci left: 3.361684e-04	ci right 3.848972e-04	k: 853	n:2370000
CYP2J2   2370000 perm   2754 sec   (861 perm/sec)   p_kst 3.599156e-04   p_cons 1.902312e-01   p_joint 5.776371e-04

Joint ci ratio: 1.055688e-01	ci left: 5.484205e-04	ci right 6.099480e-04	k: 1377	n:2380000
Cons ci ratio: 5.242279e-03	ci left: 1.897444e-01	ci right 1.907421e-01	k: 452778	n:2380000
KS ci ratio: 1.337245e-01	ci left: 3.367864e-04	ci right 3.854512e-04	k: 858	n:2380000
CYP2J2   2380000 perm   2772 sec   (859 perm/sec)   p_kst 3.605042e-04   p_cons 1.902429e-01   p_joint 5.785714e-04

Joint ci ratio: 1.054541e-01	ci left: 5.473480e-04	ci right 6.086843e-04	k: 1380	n:2390000
Cons ci ratio: 5.231169e-03	ci left: 1.897532e-01	ci right 1.907488e-01	k: 454699	n:2390000
KS ci ratio: 1.334916e-01	ci left: 3.365906e-04	ci right 3.851356e-04	k: 861	n:2390000
CYP2J2   2390000 perm   2791 sec   (856 perm/sec)   p_kst 3.602510e-04   p_cons 1.902506e-01   p_joint 5.774059e-04

Joint ci ratio: 1.050743e-01	ci left: 5.491244e-04	ci right 6.104244e-04	k: 1390	n:2400000
Cons ci ratio: 5.220489e-03	ci left: 1.897407e-01	ci right 1.907342e-01	k: 456569	n:2400000
KS ci ratio: 1.327238e-01	ci left: 3.392161e-04	ci right 3.878361e-04	k: 871	n:2400000
CYP2J2   2400000 perm   2810 sec   (854 perm/sec)   p_kst 3.629167e-04   p_cons 1.902371e-01   p_joint 5.791667e-04

Joint ci ratio: 1.046612e-01	ci left: 5.512905e-04	ci right 6.125755e-04	k: 1401	n:2410000
Cons ci ratio: 5.209579e-03	ci left: 1.897457e-01	ci right 1.907372e-01	k: 458481	n:2410000
KS ci ratio: 1.324204e-01	ci left: 3.394132e-04	ci right 3.879416e-04	k: 875	n:2410000
CYP2J2   2410000 perm   2830 sec   (852 perm/sec)   p_kst 3.630705e-04   p_cons 1.902411e-01   p_joint 5.813278e-04

Joint ci ratio: 1.045122e-01	ci left: 5.506221e-04	ci right 6.117403e-04	k: 1405	n:2420000
Cons ci ratio: 5.199002e-03	ci left: 1.897350e-01	ci right 1.907244e-01	k: 460355	n:2420000
KS ci ratio: 1.321943e-01	ci left: 3.392093e-04	ci right 3.876192e-04	k: 878	n:2420000
CYP2J2   2420000 perm   2852 sec   (849 perm/sec)   p_kst 3.628099e-04   p_cons 1.902293e-01   p_joint 5.805785e-04

Joint ci ratio: 1.042899e-01	ci left: 5.507608e-04	ci right 6.117564e-04	k: 1411	n:2430000
Cons ci ratio: 5.188012e-03	ci left: 1.897528e-01	ci right 1.907402e-01	k: 462298	n:2430000
KS ci ratio: 1.318945e-01	ci left: 3.394051e-04	ci right 3.877245e-04	k: 882	n:2430000
CYP2J2   2430000 perm   2874 sec   (846 perm/sec)   p_kst 3.629630e-04   p_cons 1.902461e-01   p_joint 5.806584e-04

Joint ci ratio: 1.041426e-01	ci left: 5.501002e-04	ci right 6.109313e-04	k: 1415	n:2440000
Cons ci ratio: 5.177511e-03	ci left: 1.897454e-01	ci right 1.907307e-01	k: 464180	n:2440000
KS ci ratio: 1.317454e-01	ci left: 3.388068e-04	ci right 3.869822e-04	k: 884	n:2440000
CYP2J2   2440000 perm   2896 sec   (843 perm/sec)   p_kst 3.622951e-04   p_cons 1.902377e-01   p_joint 5.799180e-04

Joint ci ratio: 1.039958e-01	ci left: 5.494450e-04	ci right 6.101129e-04	k: 1419	n:2450000
Cons ci ratio: 5.166751e-03	ci left: 1.897573e-01	ci right 1.907406e-01	k: 466109	n:2450000
KS ci ratio: 1.315227e-01	ci left: 3.386080e-04	ci right 3.866674e-04	k: 887	n:2450000
CYP2J2   2450000 perm   2918 sec   (840 perm/sec)   p_kst 3.620408e-04   p_cons 1.902486e-01   p_joint 5.791837e-04

Joint ci ratio: 1.037404e-01	ci left: 5.499831e-04	ci right 6.105521e-04	k: 1426	n:2460000
Cons ci ratio: 5.156419e-03	ci left: 1.897475e-01	ci right 1.907288e-01	k: 467985	n:2460000
KS ci ratio: 1.313011e-01	ci left: 3.384110e-04	ci right 3.863552e-04	k: 890	n:2460000
CYP2J2   2460000 perm   2937 sec   (838 perm/sec)   p_kst 3.617886e-04   p_cons 1.902378e-01   p_joint 5.796748e-04

Joint ci ratio: 1.036316e-01	ci left: 5.489395e-04	ci right 6.093264e-04	k: 1429	n:2470000
Cons ci ratio: 5.145926e-03	ci left: 1.897512e-01	ci right 1.907305e-01	k: 469894	n:2470000
KS ci ratio: 1.310074e-01	ci left: 3.386072e-04	ci right 3.864636e-04	k: 894	n:2470000
CYP2J2   2470000 perm   2958 sec   (835 perm/sec)   p_kst 3.619433e-04   p_cons 1.902405e-01   p_joint 5.785425e-04

Joint ci ratio: 1.033789e-01	ci left: 5.494756e-04	ci right 6.097650e-04	k: 1436	n:2480000
Cons ci ratio: 5.135409e-03	ci left: 1.897601e-01	ci right 1.907374e-01	k: 471816	n:2480000
KS ci ratio: 1.307884e-01	ci left: 3.384119e-04	ci right 3.861545e-04	k: 897	n:2480000
CYP2J2   2480000 perm   2980 sec   (832 perm/sec)   p_kst 3.616935e-04   p_cons 1.902484e-01   p_joint 5.790323e-04

Joint ci ratio: 1.030566e-01	ci left: 5.507900e-04	ci right 6.110239e-04	k: 1445	n:2490000
Cons ci ratio: 5.125263e-03	ci left: 1.897504e-01	ci right 1.907258e-01	k: 473692	n:2490000
KS ci ratio: 1.305705e-01	ci left: 3.382183e-04	ci right 3.858479e-04	k: 900	n:2490000
CYP2J2   2490000 perm   3002 sec   (830 perm/sec)   p_kst 3.614458e-04   p_cons 1.902378e-01   p_joint 5.803213e-04

Joint ci ratio: 1.029144e-01	ci left: 5.501457e-04	ci right 6.102210e-04	k: 1449	n:2500000
Cons ci ratio: 5.114567e-03	ci left: 1.897776e-01	ci right 1.907511e-01	k: 475660	n:2500000
KS ci ratio: 1.301378e-01	ci left: 3.391871e-04	ci right 3.867827e-04	k: 906	n:2500000
CYP2J2   2500000 perm   3025 sec   (827 perm/sec)   p_kst 3.624000e-04   p_cons 1.902640e-01   p_joint 5.796000e-04

Joint ci ratio: 1.027021e-01	ci left: 5.502828e-04	ci right 6.102417e-04	k: 1455	n:2510000
Cons ci ratio: 5.104703e-03	ci left: 1.897584e-01	ci right 1.907299e-01	k: 477512	n:2510000
KS ci ratio: 1.299232e-01	ci left: 3.389921e-04	ci right 3.864758e-04	k: 909	n:2510000
CYP2J2   2510000 perm   3047 sec   (824 perm/sec)   p_kst 3.621514e-04   p_cons 1.902438e-01   p_joint 5.796813e-04

Joint ci ratio: 1.025965e-01	ci left: 5.492591e-04	ci right 6.090411e-04	k: 1458	n:2520000
Cons ci ratio: 5.094718e-03	ci left: 1.897501e-01	ci right 1.907197e-01	k: 479391	n:2520000
KS ci ratio: 1.298519e-01	ci left: 3.380309e-04	ci right 3.853519e-04	k: 910	n:2520000
CYP2J2   2520000 perm   3069 sec   (821 perm/sec)   p_kst 3.611111e-04   p_cons 1.902345e-01   p_joint 5.785714e-04

Joint ci ratio: 1.024562e-01	ci left: 5.486286e-04	ci right 6.082554e-04	k: 1462	n:2530000
Cons ci ratio: 5.084629e-03	ci left: 1.897517e-01	ci right 1.907194e-01	k: 481295	n:2530000
KS ci ratio: 1.294263e-01	ci left: 3.389894e-04	ci right 3.862772e-04	k: 916	n:2530000
CYP2J2   2530000 perm   3091 sec   (818 perm/sec)   p_kst 3.620553e-04   p_cons 1.902352e-01   p_joint 5.778656e-04

Joint ci ratio: 1.061114e-01	ci left: 5.085079e-04	ci right 5.658691e-04	k: 1363	n:2540000
Cons ci ratio: 4.918660e-03	ci left: 1.995464e-01	ci right 2.005307e-01	k: 508097	n:2540000
KS ci ratio: 1.292854e-01	ci left: 3.384167e-04	ci right 3.855693e-04	k: 918	n:2540000
CYP2J2   2540000 perm   3111 sec   (816 perm/sec)   p_kst 3.614173e-04   p_cons 2.000382e-01   p_joint 5.366142e-04

Joint ci ratio: 1.059562e-01	ci left: 5.080408e-04	ci right 5.652602e-04	k: 1367	n:2550000
Cons ci ratio: 4.908798e-03	ci left: 1.995609e-01	ci right 2.005433e-01	k: 510132	n:2550000
KS ci ratio: 1.291450e-01	ci left: 3.378486e-04	ci right 3.848669e-04	k: 920	n:2550000
CYP2J2   2550000 perm   3131 sec   (814 perm/sec)   p_kst 3.607843e-04   p_cons 2.000518e-01   p_joint 5.360784e-04

Joint ci ratio: 1.057246e-01	ci left: 5.083380e-04	ci right 5.654579e-04	k: 1373	n:2560000
Cons ci ratio: 4.898887e-03	ci left: 1.995824e-01	ci right 2.005629e-01	k: 512185	n:2560000
KS ci ratio: 1.290051e-01	ci left: 3.372848e-04	ci right 3.841700e-04	k: 922	n:2560000
CYP2J2   2560000 perm   3151 sec   (812 perm/sec)   p_kst 3.601563e-04   p_cons 2.000723e-01   p_joint 5.363281e-04

Joint ci ratio: 1.100574e-01	ci left: 4.662268e-04	ci right 5.209011e-04	k: 1267	n:2570000
Cons ci ratio: 4.889738e-03	ci left: 1.995578e-01	ci right 2.005363e-01	k: 514120	n:2570000
KS ci ratio: 1.285878e-01	ci left: 3.382319e-04	ci right 3.850849e-04	k: 928	n:2570000
CYP2J2   2570000 perm   3170 sec   (811 perm/sec)   p_kst 3.610895e-04   p_cons 2.000467e-01   p_joint 4.929961e-04

Joint ci ratio: 1.097548e-01	ci left: 4.670583e-04	ci right 5.216699e-04	k: 1274	n:2580000
Cons ci ratio: 4.880291e-03	ci left: 1.995562e-01	ci right 2.005328e-01	k: 516114	n:2580000
KS ci ratio: 1.281059e-01	ci left: 3.395470e-04	ci right 3.863926e-04	k: 935	n:2580000
CYP2J2   2580000 perm   3191 sec   (809 perm/sec)   p_kst 3.624031e-04   p_cons 2.000442e-01   p_joint 4.937984e-04

Joint ci ratio: 1.093268e-01	ci left: 4.690103e-04	ci right 5.236224e-04	k: 1284	n:2590000
Cons ci ratio: 4.870916e-03	ci left: 1.995535e-01	ci right 2.005283e-01	k: 518105	n:2590000
KS ci ratio: 1.277651e-01	ci left: 3.401047e-04	ci right 3.868930e-04	k: 940	n:2590000
CYP2J2   2590000 perm   3211 sec   (807 perm/sec)   p_kst 3.629344e-04   p_cons 2.000405e-01   p_joint 4.957529e-04

Joint ci ratio: 1.091147e-01	ci left: 4.690769e-04	ci right 5.235841e-04	k: 1289	n:2600000
Cons ci ratio: 4.861618e-03	ci left: 1.995493e-01	ci right 2.005222e-01	k: 520092	n:2600000
KS ci ratio: 1.274944e-01	ci left: 3.402860e-04	ci right 3.869925e-04	k: 944	n:2600000
CYP2J2   2600000 perm   3231 sec   (805 perm/sec)   p_kst 3.630769e-04   p_cons 2.000354e-01   p_joint 4.957692e-04

Joint ci ratio: 1.089460e-01	ci left: 4.687705e-04	ci right 5.231523e-04	k: 1293	n:2610000
Cons ci ratio: 4.852495e-03	ci left: 1.995371e-01	ci right 2.005080e-01	k: 522058	n:2610000
KS ci ratio: 1.271584e-01	ci left: 3.408369e-04	ci right 3.874864e-04	k: 949	n:2610000
CYP2J2   2610000 perm   3252 sec   (803 perm/sec)   p_kst 3.636015e-04   p_cons 2.000222e-01   p_joint 4.954023e-04

Joint ci ratio: 1.104069e-01	ci left: 4.543600e-04	ci right 5.078229e-04	k: 1259	n:2620000
Cons ci ratio: 4.843319e-03	ci left: 1.995318e-01	ci right 2.005009e-01	k: 524042	n:2620000
KS ci ratio: 1.269581e-01	ci left: 3.406446e-04	ci right 3.871889e-04	k: 952	n:2620000
CYP2J2   2620000 perm   3273 sec   (801 perm/sec)   p_kst 3.633588e-04   p_cons 2.000160e-01   p_joint 4.805344e-04

Joint ci ratio: 1.101885e-01	ci left: 4.544811e-04	ci right 5.078455e-04	k: 1264	n:2630000
Cons ci ratio: 4.833788e-03	ci left: 1.995536e-01	ci right 2.005209e-01	k: 526097	n:2630000
KS ci ratio: 1.266925e-01	ci left: 3.408221e-04	ci right 3.872858e-04	k: 956	n:2630000
CYP2J2   2630000 perm   3292 sec   (799 perm/sec)   p_kst 3.634981e-04   p_cons 2.000369e-01   p_joint 4.806084e-04

Joint ci ratio: 1.100147e-01	ci left: 4.542330e-04	ci right 5.074788e-04	k: 1268	n:2640000
Cons ci ratio: 4.824461e-03	ci left: 1.995653e-01	ci right 2.005308e-01	k: 528126	n:2640000
KS ci ratio: 1.264286e-01	ci left: 3.409983e-04	ci right 3.873819e-04	k: 960	n:2640000
CYP2J2   2640000 perm   3316 sec   (796 perm/sec)   p_kst 3.636364e-04   p_cons 2.000477e-01   p_joint 4.803030e-04

Joint ci ratio: 1.097986e-01	ci left: 4.543538e-04	ci right 5.075024e-04	k: 1273	n:2650000
Cons ci ratio: 4.815142e-03	ci left: 1.995800e-01	ci right 2.005437e-01	k: 530163	n:2650000
KS ci ratio: 1.263629e-01	ci left: 3.400769e-04	ci right 3.863094e-04	k: 961	n:2650000
CYP2J2   2650000 perm   3340 sec   (793 perm/sec)   p_kst 3.626415e-04   p_cons 2.000615e-01   p_joint 4.803774e-04

Joint ci ratio: 1.096696e-01	ci left: 4.537426e-04	ci right 5.067532e-04	k: 1276	n:2660000
Cons ci ratio: 4.806205e-03	ci left: 1.995728e-01	ci right 2.005346e-01	k: 532142	n:2660000
KS ci ratio: 1.261663e-01	ci left: 3.398906e-04	ci right 3.860205e-04	k: 964	n:2660000
CYP2J2   2660000 perm   3364 sec   (791 perm/sec)   p_kst 3.624060e-04   p_cons 2.000534e-01   p_joint 4.796992e-04

Joint ci ratio: 1.094983e-01	ci left: 4.535002e-04	ci right 5.063945e-04	k: 1280	n:2670000
Cons ci ratio: 4.797317e-03	ci left: 1.995656e-01	ci right 2.005257e-01	k: 534121	n:2670000
KS ci ratio: 1.258407e-01	ci left: 3.404312e-04	ci right 3.865064e-04	k: 969	n:2670000
CYP2J2   2670000 perm   3388 sec   (788 perm/sec)   p_kst 3.629213e-04   p_cons 2.000453e-01   p_joint 4.794007e-04

Joint ci ratio: 1.091579e-01	ci left: 4.547115e-04	ci right 5.075716e-04	k: 1288	n:2680000
Cons ci ratio: 4.788545e-03	ci left: 1.995540e-01	ci right 2.005123e-01	k: 536088	n:2680000
KS ci ratio: 1.255176e-01	ci left: 3.409680e-04	ci right 3.869885e-04	k: 974	n:2680000
CYP2J2   2680000 perm   3412 sec   (785 perm/sec)   p_kst 3.634328e-04   p_cons 2.000328e-01   p_joint 4.805970e-04

Joint ci ratio: 1.093704e-01	ci left: 4.512131e-04	ci right 5.037752e-04	k: 1283	n:2690000
Cons ci ratio: 4.779777e-03	ci left: 1.995455e-01	ci right 2.005020e-01	k: 538063	n:2690000
KS ci ratio: 1.252609e-01	ci left: 3.411408e-04	ci right 3.870835e-04	k: 978	n:2690000
CYP2J2   2690000 perm   3436 sec   (783 perm/sec)   p_kst 3.635688e-04   p_cons 2.000234e-01   p_joint 4.769517e-04

Joint ci ratio: 1.097130e-01	ci left: 4.466601e-04	ci right 4.988654e-04	k: 1275	n:2700000
Cons ci ratio: 4.770714e-03	ci left: 1.995600e-01	ci right 2.005147e-01	k: 540100	n:2700000
KS ci ratio: 1.249422e-01	ci left: 3.416712e-04	ci right 3.875596e-04	k: 983	n:2700000
CYP2J2   2700000 perm   3460 sec   (780 perm/sec)   p_kst 3.640741e-04   p_cons 2.000370e-01   p_joint 4.722222e-04

Joint ci ratio: 1.092855e-01	ci left: 4.486010e-04	ci right 5.008156e-04	k: 1285	n:2710000
Cons ci ratio: 4.762043e-03	ci left: 1.995515e-01	ci right 2.005044e-01	k: 542075	n:2710000
KS ci ratio: 1.243746e-01	ci left: 3.436279e-04	ci right 3.895540e-04	k: 992	n:2710000
CYP2J2   2710000 perm   3484 sec   (778 perm/sec)   p_kst 3.660517e-04   p_cons 2.000277e-01   p_joint 4.741697e-04

Joint ci ratio: 1.092006e-01	ci left: 4.476669e-04	ci right 4.997297e-04	k: 1287	n:2720000
Cons ci ratio: 4.753441e-03	ci left: 1.995417e-01	ci right 2.004928e-01	k: 544046	n:2720000
KS ci ratio: 1.243121e-01	ci left: 3.427208e-04	ci right 3.885009e-04	k: 993	n:2720000
CYP2J2   2720000 perm   3509 sec   (775 perm/sec)   p_kst 3.650735e-04   p_cons 2.000169e-01   p_joint 4.731618e-04

Joint ci ratio: 1.103642e-01	ci left: 4.364084e-04	ci right 4.877378e-04	k: 1260	n:2730000
Cons ci ratio: 4.745043e-03	ci left: 1.995213e-01	ci right 2.004706e-01	k: 545988	n:2730000
KS ci ratio: 1.241250e-01	ci left: 3.425302e-04	ci right 3.882109e-04	k: 996	n:2730000
CYP2J2   2730000 perm   3534 sec   (773 perm/sec)   p_kst 3.648352e-04   p_cons 1.999956e-01   p_joint 4.615385e-04

Joint ci ratio: 1.102768e-01	ci left: 4.355254e-04	ci right 4.867078e-04	k: 1262	n:2740000
Cons ci ratio: 4.736182e-03	ci left: 1.995353e-01	ci right 2.004829e-01	k: 548024	n:2740000
KS ci ratio: 1.238148e-01	ci left: 3.430483e-04	ci right 3.886754e-04	k: 1001	n:2740000
CYP2J2   2740000 perm   3558 sec   (770 perm/sec)   p_kst 3.653285e-04   p_cons 2.000088e-01   p_joint 4.605839e-04

Joint ci ratio: 1.072204e-01	ci left: 4.597656e-04	ci right 5.122047e-04	k: 1335	n:2750000
Cons ci ratio: 4.727246e-03	ci left: 1.995575e-01	ci right 2.005035e-01	k: 550083	n:2750000
KS ci ratio: 1.229586e-01	ci left: 3.467347e-04	ci right 3.925100e-04	k: 1015	n:2750000
CYP2J2   2750000 perm   3583 sec   (768 perm/sec)   p_kst 3.690909e-04   p_cons 2.000302e-01   p_joint 4.854545e-04

Joint ci ratio: 1.069405e-01	ci left: 4.605681e-04	ci right 5.129530e-04	k: 1342	n:2760000
Cons ci ratio: 4.718794e-03	ci left: 1.995503e-01	ci right 2.004945e-01	k: 552061	n:2760000
KS ci ratio: 1.228378e-01	ci left: 3.461807e-04	ci right 3.918347e-04	k: 1017	n:2760000
CYP2J2   2760000 perm   3608 sec   (765 perm/sec)   p_kst 3.684783e-04   p_cons 2.000221e-01   p_joint 4.862319e-04

Joint ci ratio: 1.065051e-01	ci left: 4.627705e-04	ci right 5.151782e-04	k: 1353	n:2770000
Cons ci ratio: 4.710471e-03	ci left: 1.995374e-01	ci right 2.004799e-01	k: 554023	n:2770000
KS ci ratio: 1.224176e-01	ci left: 3.473806e-04	ci right 3.930247e-04	k: 1024	n:2770000
CYP2J2   2770000 perm   3632 sec   (763 perm/sec)   p_kst 3.696751e-04   p_cons 2.000083e-01   p_joint 4.884477e-04

Joint ci ratio: 1.063482e-01	ci left: 4.625064e-04	ci right 5.148022e-04	k: 1357	n:2780000
Cons ci ratio: 4.702378e-03	ci left: 1.995120e-01	ci right 2.004527e-01	k: 555950	n:2780000
KS ci ratio: 1.221200e-01	ci left: 3.478746e-04	ci right 3.934645e-04	k: 1029	n:2780000
CYP2J2   2780000 perm   3656 sec   (760 perm/sec)   p_kst 3.701439e-04   p_cons 1.999820e-01   p_joint 4.881295e-04

Joint ci ratio: 1.061919e-01	ci left: 4.622443e-04	ci right 5.144288e-04	k: 1361	n:2790000
Cons ci ratio: 4.694279e-03	ci left: 1.994899e-01	ci right 2.004290e-01	k: 557886	n:2790000
KS ci ratio: 1.218836e-01	ci left: 3.480176e-04	ci right 3.935317e-04	k: 1033	n:2790000
CYP2J2   2790000 perm   3681 sec   (758 perm/sec)   p_kst 3.702509e-04   p_cons 1.999591e-01   p_joint 4.878136e-04

Joint ci ratio: 1.059975e-01	ci left: 4.623317e-04	ci right 5.144246e-04	k: 1366	n:2800000
Cons ci ratio: 4.686080e-03	ci left: 1.994777e-01	ci right 2.004150e-01	k: 559849	n:2800000
KS ci ratio: 1.218248e-01	ci left: 3.471210e-04	ci right 3.924942e-04	k: 1034	n:2800000
CYP2J2   2800000 perm   3706 sec   (756 perm/sec)   p_kst 3.692857e-04   p_cons 1.999461e-01   p_joint 4.878571e-04

Joint ci ratio: 1.064662e-01	ci left: 4.565294e-04	ci right 5.082101e-04	k: 1354	n:2810000
Cons ci ratio: 4.677394e-03	ci left: 1.995019e-01	ci right 2.004375e-01	k: 561914	n:2810000
KS ci ratio: 1.215900e-01	ci left: 3.472658e-04	ci right 3.925642e-04	k: 1038	n:2810000
CYP2J2   2810000 perm   3732 sec   (753 perm/sec)   p_kst 3.693950e-04   p_cons 1.999694e-01   p_joint 4.818505e-04

Joint ci ratio: 1.068615e-01	ci left: 4.514589e-04	ci right 5.027674e-04	k: 1344	n:2820000
Cons ci ratio: 4.668957e-03	ci left: 1.995120e-01	ci right 2.004460e-01	k: 563940	n:2820000
KS ci ratio: 1.213566e-01	ci left: 3.474097e-04	ci right 3.926337e-04	k: 1042	n:2820000
CYP2J2   2820000 perm   3757 sec   (751 perm/sec)   p_kst 3.695035e-04   p_cons 1.999787e-01   p_joint 4.765957e-04

Joint ci ratio: 1.066634e-01	ci left: 4.515833e-04	ci right 5.028048e-04	k: 1349	n:2830000
Cons ci ratio: 4.661199e-03	ci left: 1.994787e-01	ci right 2.004110e-01	k: 565843	n:2830000
KS ci ratio: 1.211246e-01	ci left: 3.475527e-04	ci right 3.927026e-04	k: 1046	n:2830000
CYP2J2   2830000 perm   3783 sec   (748 perm/sec)   p_kst 3.696113e-04   p_cons 1.999445e-01   p_joint 4.766784e-04

Joint ci ratio: 1.063096e-01	ci left: 4.530778e-04	ci right 5.042877e-04	k: 1358	n:2840000
Cons ci ratio: 4.653203e-03	ci left: 1.994646e-01	ci right 2.003952e-01	k: 567800	n:2840000
KS ci ratio: 1.207216e-01	ci left: 3.487191e-04	ci right 3.938591e-04	k: 1053	n:2840000
CYP2J2   2840000 perm   3809 sec   (746 perm/sec)   p_kst 3.707746e-04   p_cons 1.999296e-01   p_joint 4.781690e-04

Joint ci ratio: 1.062315e-01	ci left: 4.521711e-04	ci right 5.032387e-04	k: 1360	n:2850000
Cons ci ratio: 4.644774e-03	ci left: 1.994832e-01	ci right 2.004122e-01	k: 569850	n:2850000
KS ci ratio: 1.206073e-01	ci left: 3.481761e-04	ci right 3.932001e-04	k: 1055	n:2850000
CYP2J2   2850000 perm   3835 sec   (743 perm/sec)   p_kst 3.701754e-04   p_cons 1.999474e-01   p_joint 4.771930e-04

Joint ci ratio: 1.059206e-01	ci left: 4.533131e-04	ci right 5.043505e-04	k: 1368	n:2860000
Cons ci ratio: 4.636983e-03	ci left: 1.994607e-01	ci right 2.003881e-01	k: 571783	n:2860000
KS ci ratio: 1.202661e-01	ci left: 3.489935e-04	ci right 3.939863e-04	k: 1061	n:2860000
CYP2J2   2860000 perm   3859 sec   (741 perm/sec)   p_kst 3.709790e-04   p_cons 1.999241e-01   p_joint 4.783217e-04

Joint ci ratio: 1.057662e-01	ci left: 4.530905e-04	ci right 5.040238e-04	k: 1372	n:2870000
Cons ci ratio: 4.628965e-03	ci left: 1.994569e-01	ci right 2.003827e-01	k: 573769	n:2870000
KS ci ratio: 1.201530e-01	ci left: 3.484534e-04	ci right 3.933313e-04	k: 1063	n:2870000
CYP2J2   2870000 perm   3885 sec   (739 perm/sec)   p_kst 3.703833e-04   p_cons 1.999195e-01   p_joint 4.780488e-04

Joint ci ratio: 1.056125e-01	ci left: 4.528694e-04	ci right 5.036993e-04	k: 1376	n:2880000
Cons ci ratio: 4.620952e-03	ci left: 1.994556e-01	ci right 2.003797e-01	k: 575762	n:2880000
KS ci ratio: 1.200403e-01	ci left: 3.479170e-04	ci right 3.926809e-04	k: 1065	n:2880000
CYP2J2   2880000 perm   3911 sec   (736 perm/sec)   p_kst 3.697917e-04   p_cons 1.999174e-01   p_joint 4.777778e-04

Joint ci ratio: 1.054212e-01	ci left: 4.529868e-04	ci right 5.037321e-04	k: 1381	n:2890000
Cons ci ratio: 4.612902e-03	ci left: 1.994598e-01	ci right 2.003823e-01	k: 577771	n:2890000
KS ci ratio: 1.197597e-01	ci left: 3.483914e-04	ci right 3.931041e-04	k: 1070	n:2890000
CYP2J2   2890000 perm   3936 sec   (734 perm/sec)   p_kst 3.702422e-04   p_cons 1.999208e-01   p_joint 4.778547e-04

Joint ci ratio: 1.053451e-01	ci left: 4.520963e-04	ci right 5.027029e-04	k: 1383	n:2900000
Cons ci ratio: 4.604977e-03	ci left: 1.994581e-01	ci right 2.003790e-01	k: 579763	n:2900000
KS ci ratio: 1.197598e-01	ci left: 3.471900e-04	ci right 3.917486e-04	k: 1070	n:2900000
CYP2J2   2900000 perm   3962 sec   (732 perm/sec)   p_kst 3.689655e-04   p_cons 1.999183e-01   p_joint 4.768966e-04

Joint ci ratio: 1.050796e-01	ci left: 4.528849e-04	ci right 5.034442e-04	k: 1390	n:2910000
Cons ci ratio: 4.597039e-03	ci left: 1.994602e-01	ci right 2.003796e-01	k: 581766	n:2910000
KS ci ratio: 1.193703e-01	ci left: 3.483305e-04	ci right 3.928798e-04	k: 1077	n:2910000
CYP2J2   2910000 perm   3988 sec   (730 perm/sec)   p_kst 3.701031e-04   p_cons 1.999196e-01   p_joint 4.776632e-04

Joint ci ratio: 1.050420e-01	ci left: 4.516674e-04	ci right 5.020716e-04	k: 1391	n:2920000
Cons ci ratio: 4.589132e-03	ci left: 1.994630e-01	ci right 2.003808e-01	k: 583771	n:2920000
KS ci ratio: 1.193150e-01	ci left: 3.474698e-04	ci right 3.918870e-04	k: 1078	n:2920000
CYP2J2   2920000 perm   4013 sec   (728 perm/sec)   p_kst 3.691781e-04   p_cons 1.999216e-01   p_joint 4.763699e-04

Joint ci ratio: 1.048914e-01	ci left: 4.514552e-04	ci right 5.017590e-04	k: 1395	n:2930000
Cons ci ratio: 4.581359e-03	ci left: 1.994593e-01	ci right 2.003755e-01	k: 585757	n:2930000
KS ci ratio: 1.189298e-01	ci left: 3.486018e-04	ci right 3.930097e-04	k: 1085	n:2930000
CYP2J2   2930000 perm   4040 sec   (725 perm/sec)   p_kst 3.703072e-04   p_cons 1.999171e-01   p_joint 4.761092e-04

Joint ci ratio: 1.047040e-01	ci left: 4.515757e-04	ci right 5.017976e-04	k: 1400	n:2940000
Cons ci ratio: 4.573518e-03	ci left: 1.994630e-01	ci right 2.003777e-01	k: 587765	n:2940000
KS ci ratio: 1.187113e-01	ci left: 3.487362e-04	ci right 3.930739e-04	k: 1089	n:2940000
CYP2J2   2940000 perm   4066 sec   (723 perm/sec)   p_kst 3.704082e-04   p_cons 1.999201e-01   p_joint 4.761905e-04

Joint ci ratio: 1.045177e-01	ci left: 4.516955e-04	ci right 5.018358e-04	k: 1405	n:2950000
Cons ci ratio: 4.565596e-03	ci left: 1.994753e-01	ci right 2.003884e-01	k: 589798	n:2950000
KS ci ratio: 1.186026e-01	ci left: 3.482119e-04	ci right 3.924395e-04	k: 1091	n:2950000
CYP2J2   2950000 perm   4093 sec   (721 perm/sec)   p_kst 3.698305e-04   p_cons 1.999315e-01   p_joint 4.762712e-04

Joint ci ratio: 1.042954e-01	ci left: 4.521437e-04	ci right 5.022204e-04	k: 1411	n:2960000
Cons ci ratio: 4.557735e-03	ci left: 1.994860e-01	ci right 2.003976e-01	k: 591827	n:2960000
KS ci ratio: 1.182781e-01	ci left: 3.490025e-04	ci right 3.932008e-04	k: 1097	n:2960000
CYP2J2   2960000 perm   4120 sec   (718 perm/sec)   p_kst 3.706081e-04   p_cons 1.999416e-01   p_joint 4.766892e-04

Joint ci ratio: 1.041480e-01	ci left: 4.519330e-04	ci right 5.019113e-04	k: 1415	n:2970000
Cons ci ratio: 4.550163e-03	ci left: 1.994793e-01	ci right 2.003893e-01	k: 593804	n:2970000
KS ci ratio: 1.182243e-01	ci left: 3.481541e-04	ci right 3.922235e-04	k: 1098	n:2970000
CYP2J2   2970000 perm   4147 sec   (716 perm/sec)   p_kst 3.696970e-04   p_cons 1.999340e-01   p_joint 4.764310e-04

Joint ci ratio: 1.049671e-01	ci left: 4.432268e-04	ci right 4.926516e-04	k: 1393	n:2980000
Cons ci ratio: 4.542442e-03	ci left: 1.994856e-01	ci right 2.003942e-01	k: 595820	n:2980000
KS ci ratio: 1.180097e-01	ci left: 3.482884e-04	ci right 3.922893e-04	k: 1102	n:2980000
CYP2J2   2980000 perm   4171 sec   (714 perm/sec)   p_kst 3.697987e-04   p_cons 1.999396e-01   p_joint 4.674497e-04

Joint ci ratio: 1.048543e-01	ci left: 4.427215e-04	ci right 4.920336e-04	k: 1396	n:2990000
Cons ci ratio: 4.535055e-03	ci left: 1.994712e-01	ci right 2.003782e-01	k: 597774	n:2990000
KS ci ratio: 1.177963e-01	ci left: 3.484219e-04	ci right 3.923545e-04	k: 1106	n:2990000
CYP2J2   2990000 perm   4194 sec   (713 perm/sec)   p_kst 3.698997e-04   p_cons 1.999244e-01   p_joint 4.668896e-04

Joint ci ratio: 1.046298e-01	ci left: 4.431933e-04	ci right 4.924459e-04	k: 1402	n:3000000
Cons ci ratio: 4.527808e-03	ci left: 1.994496e-01	ci right 2.003550e-01	k: 599706	n:3000000
KS ci ratio: 1.175312e-01	ci left: 3.488781e-04	ci right 3.927623e-04	k: 1111	n:3000000
CYP2J2   3000000 perm   4217 sec   (711 perm/sec)   p_kst 3.703333e-04   p_cons 1.999020e-01   p_joint 4.673333e-04

Joint ci ratio: 1.044810e-01	ci left: 4.430151e-04	ci right 4.921735e-04	k: 1406	n:3010000
Cons ci ratio: 4.520266e-03	ci left: 1.994513e-01	ci right 2.003552e-01	k: 601708	n:3010000
KS ci ratio: 1.173730e-01	ci left: 3.486865e-04	ci right 3.924834e-04	k: 1114	n:3010000
CYP2J2   3010000 perm   4241 sec   (710 perm/sec)   p_kst 3.700997e-04   p_cons 1.999030e-01   p_joint 4.671096e-04

Joint ci ratio: 1.043698e-01	ci left: 4.425156e-04	ci right 4.915631e-04	k: 1409	n:3020000
Cons ci ratio: 4.512772e-03	ci left: 1.994524e-01	ci right 2.003548e-01	k: 603708	n:3020000
KS ci ratio: 1.172679e-01	ci left: 3.481747e-04	ci right 3.918655e-04	k: 1116	n:3020000
CYP2J2   3020000 perm   4264 sec   (708 perm/sec)   p_kst 3.695364e-04   p_cons 1.999033e-01   p_joint 4.665563e-04

Joint ci ratio: 1.042959e-01	ci left: 4.416980e-04	ci right 4.906181e-04	k: 1411	n:3030000
Cons ci ratio: 4.505221e-03	ci left: 1.994600e-01	ci right 2.003610e-01	k: 605728	n:3030000
KS ci ratio: 1.170585e-01	ci left: 3.483071e-04	ci right 3.919310e-04	k: 1120	n:3030000
CYP2J2   3030000 perm   4288 sec   (707 perm/sec)   p_kst 3.696370e-04   p_cons 1.999102e-01   p_joint 4.656766e-04

Joint ci ratio: 1.041118e-01	ci left: 4.418469e-04	ci right 4.906918e-04	k: 1416	n:3040000
Cons ci ratio: 4.497639e-03	ci left: 1.994726e-01	ci right 2.003721e-01	k: 607763	n:3040000
KS ci ratio: 1.167983e-01	ci left: 3.487579e-04	ci right 3.923346e-04	k: 1125	n:3040000
CYP2J2   3040000 perm   4311 sec   (705 perm/sec)   p_kst 3.700658e-04   p_cons 1.999220e-01   p_joint 4.657895e-04

Joint ci ratio: 1.039286e-01	ci left: 4.419949e-04	ci right 4.907649e-04	k: 1421	n:3050000
Cons ci ratio: 4.490151e-03	ci left: 1.994811e-01	ci right 2.003791e-01	k: 609786	n:3050000
KS ci ratio: 1.166947e-01	ci left: 3.482511e-04	ci right 3.917231e-04	k: 1127	n:3050000
CYP2J2   3050000 perm   4335 sec   (704 perm/sec)   p_kst 3.695082e-04   p_cons 1.999298e-01   p_joint 4.659016e-04

Joint ci ratio: 1.101487e-01	ci left: 3.909332e-04	ci right 4.368183e-04	k: 1265	n:3060000
Cons ci ratio: 4.482818e-03	ci left: 1.994811e-01	ci right 2.003776e-01	k: 611783	n:3060000
KS ci ratio: 1.164883e-01	ci left: 3.483821e-04	ci right 3.917883e-04	k: 1131	n:3060000
CYP2J2   3060000 perm   4359 sec   (702 perm/sec)   p_kst 3.696078e-04   p_cons 1.999291e-01   p_joint 4.133987e-04

Joint ci ratio: 1.101053e-01	ci left: 3.899765e-04	ci right 4.357301e-04	k: 1266	n:3070000
Cons ci ratio: 4.475435e-03	ci left: 1.994873e-01	ci right 2.003824e-01	k: 613799	n:3070000
KS ci ratio: 1.164370e-01	ci left: 3.475635e-04	ci right 3.908473e-04	k: 1132	n:3070000
CYP2J2   3070000 perm   4387 sec   (700 perm/sec)   p_kst 3.687296e-04   p_cons 1.999345e-01   p_joint 4.123779e-04

Joint ci ratio: 1.100185e-01	ci left: 3.893418e-04	ci right 4.349826e-04	k: 1268	n:3080000
Cons ci ratio: 4.467803e-03	ci left: 1.995138e-01	ci right 2.004075e-01	k: 615878	n:3080000
KS ci ratio: 1.163857e-01	ci left: 3.467503e-04	ci right 3.899125e-04	k: 1133	n:3080000
CYP2J2   3080000 perm   4414 sec   (698 perm/sec)   p_kst 3.678571e-04   p_cons 1.999604e-01   p_joint 4.116883e-04

Joint ci ratio: 1.097593e-01	ci left: 3.899702e-04	ci right 4.355700e-04	k: 1274	n:3090000
Cons ci ratio: 4.460579e-03	ci left: 1.995137e-01	ci right 2.004059e-01	k: 617875	n:3090000
KS ci ratio: 1.161809e-01	ci left: 3.468849e-04	ci right 3.899827e-04	k: 1137	n:3090000
CYP2J2   3090000 perm   4442 sec   (696 perm/sec)   p_kst 3.679612e-04   p_cons 1.999595e-01   p_joint 4.122977e-04

Joint ci ratio: 1.098024e-01	ci left: 3.883985e-04	ci right 4.338335e-04	k: 1273	n:3100000
Cons ci ratio: 4.453314e-03	ci left: 1.995191e-01	ci right 2.004099e-01	k: 619889	n:3100000
KS ci ratio: 1.160790e-01	ci left: 3.463924e-04	ci right 3.893886e-04	k: 1139	n:3100000
CYP2J2   3100000 perm   4469 sec   (694 perm/sec)   p_kst 3.674194e-04   p_cons 1.999642e-01   p_joint 4.106452e-04

Joint ci ratio: 1.097164e-01	ci left: 3.877750e-04	ci right 4.330993e-04	k: 1275	n:3110000
Cons ci ratio: 4.446116e-03	ci left: 1.995221e-01	ci right 2.004115e-01	k: 621896	n:3110000
KS ci ratio: 1.159774e-01	ci left: 3.459030e-04	ci right 3.887983e-04	k: 1141	n:3110000
CYP2J2   3110000 perm   4497 sec   (692 perm/sec)   p_kst 3.668810e-04   p_cons 1.999666e-01   p_joint 4.099678e-04

Joint ci ratio: 1.095877e-01	ci left: 3.874673e-04	ci right 4.326991e-04	k: 1278	n:3120000
Cons ci ratio: 4.439024e-03	ci left: 1.995201e-01	ci right 2.004080e-01	k: 623887	n:3120000
KS ci ratio: 1.159267e-01	ci left: 3.451055e-04	ci right 3.878820e-04	k: 1142	n:3120000
CYP2J2   3120000 perm   4525 sec   (689 perm/sec)   p_kst 3.660256e-04   p_cons 1.999638e-01   p_joint 4.096154e-04

Joint ci ratio: 1.094167e-01	ci left: 3.874724e-04	ci right 4.326296e-04	k: 1282	n:3130000
Cons ci ratio: 4.431735e-03	ci left: 1.995346e-01	ci right 2.004212e-01	k: 625930	n:3130000
KS ci ratio: 1.157748e-01	ci left: 3.449336e-04	ci right 3.876290e-04	k: 1145	n:3130000
CYP2J2   3130000 perm   4552 sec   (688 perm/sec)   p_kst 3.658147e-04   p_cons 1.999776e-01   p_joint 4.095847e-04

Joint ci ratio: 1.091617e-01	ci left: 3.880970e-04	ci right 4.332148e-04	k: 1288	n:3140000
Cons ci ratio: 4.424755e-03	ci left: 1.995294e-01	ci right 2.004145e-01	k: 627911	n:3140000
KS ci ratio: 1.155231e-01	ci left: 3.453814e-04	ci right 3.880329e-04	k: 1150	n:3140000
CYP2J2   3140000 perm   4580 sec   (686 perm/sec)   p_kst 3.662420e-04   p_cons 1.999717e-01   p_joint 4.101911e-04

Joint ci ratio: 1.090772e-01	ci left: 3.874825e-04	ci right 4.324918e-04	k: 1290	n:3150000
Cons ci ratio: 4.417598e-03	ci left: 1.995394e-01	ci right 2.004231e-01	k: 629940	n:3150000
KS ci ratio: 1.153728e-01	ci left: 3.452099e-04	ci right 3.877809e-04	k: 1153	n:3150000
CYP2J2   3150000 perm   4608 sec   (684 perm/sec)   p_kst 3.660317e-04   p_cons 1.999810e-01   p_joint 4.095238e-04

Joint ci ratio: 1.089086e-01	ci left: 3.874876e-04	ci right 4.324235e-04	k: 1294	n:3160000
Cons ci ratio: 4.410567e-03	ci left: 1.995426e-01	ci right 2.004250e-01	k: 631948	n:3160000
KS ci ratio: 1.151734e-01	ci left: 3.453468e-04	ci right 3.878561e-04	k: 1157	n:3160000
CYP2J2   3160000 perm   4636 sec   (682 perm/sec)   p_kst 3.661392e-04   p_cons 1.999835e-01   p_joint 4.094937e-04

Joint ci ratio: 1.084904e-01	ci left: 3.893341e-04	ci right 4.342996e-04	k: 1304	n:3170000
Cons ci ratio: 4.403352e-03	ci left: 1.995617e-01	ci right 2.004427e-01	k: 634006	n:3170000
KS ci ratio: 1.150245e-01	ci left: 3.451765e-04	ci right 3.876061e-04	k: 1160	n:3170000
CYP2J2   3170000 perm   4665 sec   (680 perm/sec)   p_kst 3.659306e-04   p_cons 2.000019e-01   p_joint 4.113565e-04

Joint ci ratio: 1.084074e-01	ci left: 3.887217e-04	ci right 4.335799e-04	k: 1306	n:3180000
Cons ci ratio: 4.396151e-03	ci left: 1.995822e-01	ci right 2.004618e-01	k: 636069	n:3180000
KS ci ratio: 1.148762e-01	ci left: 3.450073e-04	ci right 3.873578e-04	k: 1163	n:3180000
CYP2J2   3180000 perm   4693 sec   (678 perm/sec)   p_kst 3.657233e-04   p_cons 2.000217e-01   p_joint 4.106918e-04

Joint ci ratio: 1.081182e-01	ci left: 3.896380e-04	ci right 4.344745e-04	k: 1313	n:3190000
Cons ci ratio: 4.389179e-03	ci left: 1.995884e-01	ci right 2.004667e-01	k: 638087	n:3190000
KS ci ratio: 1.146302e-01	ci left: 3.454482e-04	ci right 3.877558e-04	k: 1168	n:3190000
CYP2J2   3190000 perm   4722 sec   (676 perm/sec)   p_kst 3.661442e-04   p_cons 2.000273e-01   p_joint 4.115987e-04

Joint ci ratio: 1.079540e-01	ci left: 3.896366e-04	ci right 4.344005e-04	k: 1317	n:3200000
Cons ci ratio: 4.382239e-03	ci left: 1.995946e-01	ci right 2.004715e-01	k: 640105	n:3200000
KS ci ratio: 1.143858e-01	ci left: 3.458864e-04	ci right 3.881513e-04	k: 1173	n:3200000
CYP2J2   3200000 perm   4750 sec   (674 perm/sec)   p_kst 3.665625e-04   p_cons 2.000328e-01   p_joint 4.115625e-04

Joint ci ratio: 1.077498e-01	ci left: 3.899384e-04	ci right 4.346468e-04	k: 1322	n:3210000
Cons ci ratio: 4.375414e-03	ci left: 1.995949e-01	ci right 2.004704e-01	k: 642104	n:3210000
KS ci ratio: 1.143372e-01	ci left: 3.451115e-04	ci right 3.872626e-04	k: 1174	n:3210000
CYP2J2   3210000 perm   4776 sec   (672 perm/sec)   p_kst 3.657321e-04   p_cons 2.000324e-01   p_joint 4.118380e-04

Joint ci ratio: 1.076685e-01	ci left: 3.893318e-04	ci right 4.339349e-04	k: 1324	n:3220000
Cons ci ratio: 4.368620e-03	ci left: 1.995952e-01	ci right 2.004693e-01	k: 644103	n:3220000
KS ci ratio: 1.142400e-01	ci left: 3.446430e-04	ci right 3.866988e-04	k: 1176	n:3220000
CYP2J2   3220000 perm   4801 sec   (671 perm/sec)   p_kst 3.652174e-04   p_cons 2.000320e-01   p_joint 4.111801e-04

Joint ci ratio: 1.075874e-01	ci left: 3.887290e-04	ci right 4.332273e-04	k: 1326	n:3230000
Cons ci ratio: 4.361621e-03	ci left: 1.996128e-01	ci right 2.004856e-01	k: 646158	n:3230000
KS ci ratio: 1.141431e-01	ci left: 3.441775e-04	ci right 3.861384e-04	k: 1178	n:3230000
CYP2J2   3230000 perm   4827 sec   (669 perm/sec)   p_kst 3.647059e-04   p_cons 2.000489e-01   p_joint 4.105263e-04

Joint ci ratio: 1.086576e-01	ci left: 3.797214e-04	ci right 4.236487e-04	k: 1300	n:3240000
Cons ci ratio: 4.355047e-03	ci left: 1.996016e-01	ci right 2.004730e-01	k: 648120	n:3240000
KS ci ratio: 1.140948e-01	ci left: 3.434151e-04	ci right 3.852641e-04	k: 1179	n:3240000
CYP2J2   3240000 perm   4852 sec   (668 perm/sec)   p_kst 3.638889e-04   p_cons 2.000370e-01   p_joint 4.012346e-04

Joint ci ratio: 1.083664e-01	ci left: 3.806485e-04	ci right 4.245574e-04	k: 1307	n:3250000
Cons ci ratio: 4.348335e-03	ci left: 1.996027e-01	ci right 2.004729e-01	k: 650122	n:3250000
KS ci ratio: 1.137578e-01	ci left: 3.444509e-04	ci right 3.862939e-04	k: 1186	n:3250000
CYP2J2   3250000 perm   4876 sec   (666 perm/sec)   p_kst 3.649231e-04   p_cons 2.000375e-01   p_joint 4.021538e-04

Joint ci ratio: 1.082424e-01	ci left: 3.803761e-04	ci right 4.242002e-04	k: 1310	n:3260000
Cons ci ratio: 4.341612e-03	ci left: 1.996070e-01	ci right 2.004758e-01	k: 652134	n:3260000
KS ci ratio: 1.136621e-01	ci left: 3.439904e-04	ci right 3.857399e-04	k: 1188	n:3260000
CYP2J2   3260000 perm   4901 sec   (665 perm/sec)   p_kst 3.644172e-04   p_cons 2.000411e-01   p_joint 4.018405e-04

Joint ci ratio: 1.080776e-01	ci left: 3.804031e-04	ci right 4.241593e-04	k: 1314	n:3270000
Cons ci ratio: 4.334962e-03	ci left: 1.996081e-01	ci right 2.004756e-01	k: 654136	n:3270000
KS ci ratio: 1.134714e-01	ci left: 3.441269e-04	ci right 3.858182e-04	k: 1192	n:3270000
CYP2J2   3270000 perm   4926 sec   (664 perm/sec)   p_kst 3.645260e-04   p_cons 2.000416e-01   p_joint 4.018349e-04

Joint ci ratio: 1.083252e-01	ci left: 3.774635e-04	ci right 4.209874e-04	k: 1308	n:3280000
Cons ci ratio: 4.328181e-03	ci left: 1.996211e-01	ci right 2.004873e-01	k: 656177	n:3280000
KS ci ratio: 1.134240e-01	ci left: 3.433739e-04	ci right 3.849555e-04	k: 1193	n:3280000
CYP2J2   3280000 perm   4952 sec   (662 perm/sec)   p_kst 3.637195e-04   p_cons 2.000540e-01   p_joint 3.987805e-04

Joint ci ratio: 1.086579e-01	ci left: 3.739505e-04	ci right 4.172103e-04	k: 1300	n:3290000
Cons ci ratio: 4.321301e-03	ci left: 1.996438e-01	ci right 2.005087e-01	k: 658250	n:3290000
KS ci ratio: 1.133765e-01	ci left: 3.426256e-04	ci right 3.840980e-04	k: 1194	n:3290000
CYP2J2   3290000 perm   4977 sec   (661 perm/sec)   p_kst 3.629179e-04   p_cons 2.000760e-01   p_joint 3.951368e-04

Joint ci ratio: 1.084497e-01	ci left: 3.742914e-04	ci right 4.175023e-04	k: 1305	n:3300000
Cons ci ratio: 4.314997e-03	ci left: 1.996261e-01	ci right 2.004896e-01	k: 660190	n:3300000
KS ci ratio: 1.132818e-01	ci left: 3.421762e-04	ci right 3.835573e-04	k: 1196	n:3300000
CYP2J2   3300000 perm   5005 sec   (659 perm/sec)   p_kst 3.624242e-04   p_cons 2.000576e-01   p_joint 3.954545e-04

Joint ci ratio: 1.082427e-01	ci left: 3.746302e-04	ci right 4.177924e-04	k: 1310	n:3310000
Cons ci ratio: 4.308562e-03	ci left: 1.996202e-01	ci right 2.004824e-01	k: 662169	n:3310000
KS ci ratio: 1.131401e-01	ci left: 3.420231e-04	ci right 3.833305e-04	k: 1199	n:3310000
CYP2J2   3310000 perm   5035 sec   (657 perm/sec)   p_kst 3.622356e-04   p_cons 2.000511e-01   p_joint 3.957704e-04

Joint ci ratio: 1.089097e-01	ci left: 3.688133e-04	ci right 4.115840e-04	k: 1294	n:3320000
Cons ci ratio: 4.302366e-03	ci left: 1.995987e-01	ci right 2.004596e-01	k: 664096	n:3320000
KS ci ratio: 1.129990e-01	ci left: 3.418710e-04	ci right 3.831050e-04	k: 1202	n:3320000
CYP2J2   3320000 perm   5064 sec   (656 perm/sec)   p_kst 3.620482e-04   p_cons 2.000289e-01   p_joint 3.897590e-04

Joint ci ratio: 1.086582e-01	ci left: 3.694586e-04	ci right 4.121988e-04	k: 1300	n:3330000
Cons ci ratio: 4.295862e-03	ci left: 1.996023e-01	ci right 2.004619e-01	k: 666106	n:3330000
KS ci ratio: 1.128116e-01	ci left: 3.420116e-04	ci right 3.831897e-04	k: 1206	n:3330000
CYP2J2   3330000 perm   5092 sec   (654 perm/sec)   p_kst 3.621622e-04   p_cons 2.000318e-01   p_joint 3.903904e-04

Joint ci ratio: 1.084085e-01	ci left: 3.701001e-04	ci right 4.128098e-04	k: 1306	n:3340000
Cons ci ratio: 4.289632e-03	ci left: 1.995876e-01	ci right 2.004459e-01	k: 668055	n:3340000
KS ci ratio: 1.126251e-01	ci left: 3.421515e-04	ci right 3.832738e-04	k: 1210	n:3340000
CYP2J2   3340000 perm   5121 sec   (652 perm/sec)   p_kst 3.622754e-04   p_cons 2.000165e-01   p_joint 3.910180e-04

Joint ci ratio: 1.116608e-01	ci left: 3.472230e-04	ci right 3.885740e-04	k: 1231	n:3350000
Cons ci ratio: 4.283489e-03	ci left: 1.995685e-01	ci right 2.004255e-01	k: 669989	n:3350000
KS ci ratio: 1.124395e-01	ci left: 3.422905e-04	ci right 3.833573e-04	k: 1214	n:3350000
CYP2J2   3350000 perm   5151 sec   (650 perm/sec)   p_kst 3.623881e-04   p_cons 1.999967e-01   p_joint 3.674627e-04

Joint ci ratio: 1.114349e-01	ci left: 3.476362e-04	ci right 3.889471e-04	k: 1236	n:3360000
Cons ci ratio: 4.277027e-03	ci left: 1.995754e-01	ci right 2.004311e-01	k: 672010	n:3360000
KS ci ratio: 1.122549e-01	ci left: 3.424289e-04	ci right 3.834402e-04	k: 1218	n:3360000
CYP2J2   3360000 perm   5181 sec   (649 perm/sec)   p_kst 3.625000e-04   p_cons 2.000030e-01   p_joint 3.678571e-04

Joint ci ratio: 1.112552e-01	ci left: 3.477585e-04	ci right 3.890130e-04	k: 1240	n:3370000
Cons ci ratio: 4.270403e-03	ci left: 1.995965e-01	ci right 2.004509e-01	k: 674079	n:3370000
KS ci ratio: 1.120254e-01	ci left: 3.428548e-04	ci right 3.838277e-04	k: 1223	n:3370000
CYP2J2   3370000 perm   5207 sec   (647 perm/sec)   p_kst 3.629080e-04   p_cons 2.000234e-01   p_joint 3.679525e-04

Joint ci ratio: 1.110763e-01	ci left: 3.478802e-04	ci right 3.890784e-04	k: 1244	n:3380000
Cons ci ratio: 4.263944e-03	ci left: 1.996074e-01	ci right 2.004606e-01	k: 676114	n:3380000
KS ci ratio: 1.120254e-01	ci left: 3.418404e-04	ci right 3.826921e-04	k: 1223	n:3380000
CYP2J2   3380000 perm   5233 sec   (646 perm/sec)   p_kst 3.618343e-04   p_cons 2.000337e-01   p_joint 3.680473e-04

Joint ci ratio: 1.108539e-01	ci left: 3.482880e-04	ci right 3.894465e-04	k: 1249	n:3390000
Cons ci ratio: 4.257785e-03	ci left: 1.995979e-01	ci right 2.004498e-01	k: 678080	n:3390000
KS ci ratio: 1.118884e-01	ci left: 3.416922e-04	ci right 3.824730e-04	k: 1226	n:3390000
CYP2J2   3390000 perm   5263 sec   (644 perm/sec)   p_kst 3.616519e-04   p_cons 2.000236e-01   p_joint 3.684366e-04

Joint ci ratio: 1.114802e-01	ci left: 3.432604e-04	ci right 3.840690e-04	k: 1235	n:3400000
Cons ci ratio: 4.251516e-03	ci left: 1.995987e-01	ci right 2.004494e-01	k: 680081	n:3400000
KS ci ratio: 1.118429e-01	ci left: 3.409731e-04	ci right 3.816504e-04	k: 1227	n:3400000
CYP2J2   3400000 perm   5294 sec   (642 perm/sec)   p_kst 3.608824e-04   p_cons 2.000238e-01   p_joint 3.632353e-04

Joint ci ratio: 1.111211e-01	ci left: 3.445345e-04	ci right 3.853540e-04	k: 1243	n:3410000
Cons ci ratio: 4.245166e-03	ci left: 1.996078e-01	ci right 2.004572e-01	k: 682110	n:3410000
KS ci ratio: 1.115706e-01	ci left: 3.416836e-04	ci right 3.823399e-04	k: 1233	n:3410000
CYP2J2   3410000 perm   5320 sec   (641 perm/sec)   p_kst 3.615836e-04   p_cons 2.000323e-01   p_joint 3.645161e-04

Joint ci ratio: 1.109874e-01	ci left: 3.443799e-04	ci right 3.851288e-04	k: 1246	n:3420000
Cons ci ratio: 4.239076e-03	ci left: 1.995993e-01	ci right 2.004474e-01	k: 684079	n:3420000
KS ci ratio: 1.113902e-01	ci left: 3.418215e-04	ci right 3.824241e-04	k: 1237	n:3420000
CYP2J2   3420000 perm   5347 sec   (640 perm/sec)   p_kst 3.616959e-04   p_cons 2.000231e-01   p_joint 3.643275e-04

Joint ci ratio: 1.106330e-01	ci left: 3.456436e-04	ci right 3.864029e-04	k: 1254	n:3430000
Cons ci ratio: 4.233329e-03	ci left: 1.995669e-01	ci right 2.004138e-01	k: 685966	n:3430000
KS ci ratio: 1.111212e-01	ci left: 3.425255e-04	ci right 3.831071e-04	k: 1243	n:3430000
CYP2J2   3430000 perm   5374 sec   (638 perm/sec)   p_kst 3.623907e-04   p_cons 1.999901e-01   p_joint 3.655977e-04

Joint ci ratio: 1.105450e-01	ci left: 3.452042e-04	ci right 3.858772e-04	k: 1256	n:3440000
Cons ci ratio: 4.226983e-03	ci left: 1.995818e-01	ci right 2.004275e-01	k: 688015	n:3440000
KS ci ratio: 1.110766e-01	ci left: 3.418124e-04	ci right 3.822922e-04	k: 1244	n:3440000
CYP2J2   3440000 perm   5399 sec   (637 perm/sec)   p_kst 3.616279e-04   p_cons 2.000044e-01   p_joint 3.651163e-04

Joint ci ratio: 1.104133e-01	ci left: 3.450491e-04	ci right 3.856523e-04	k: 1259	n:3450000
Cons ci ratio: 4.221055e-03	ci left: 1.995670e-01	ci right 2.004115e-01	k: 689962	n:3450000
KS ci ratio: 1.109431e-01	ci left: 3.416671e-04	ci right 3.820778e-04	k: 1247	n:3450000
CYP2J2   3450000 perm   5425 sec   (636 perm/sec)   p_kst 3.614493e-04   p_cons 1.999890e-01   p_joint 3.649275e-04

Joint ci ratio: 1.107657e-01	ci left: 3.418036e-04	ci right 3.821616e-04	k: 1251	n:3460000
Cons ci ratio: 4.214932e-03	ci left: 1.995691e-01	ci right 2.004123e-01	k: 691967	n:3460000
KS ci ratio: 1.108987e-01	ci left: 3.409606e-04	ci right 3.812706e-04	k: 1248	n:3460000
CYP2J2   3460000 perm   5452 sec   (635 perm/sec)   p_kst 3.606936e-04   p_cons 1.999905e-01   p_joint 3.615607e-04

Joint ci ratio: 1.106332e-01	ci left: 3.416592e-04	ci right 3.819488e-04	k: 1254	n:3470000
Cons ci ratio: 4.208891e-03	ci left: 1.995669e-01	ci right 2.004089e-01	k: 693957	n:3470000
KS ci ratio: 1.107657e-01	ci left: 3.408186e-04	ci right 3.810603e-04	k: 1251	n:3470000
CYP2J2   3470000 perm   5479 sec   (633 perm/sec)   p_kst 3.605187e-04   p_cons 1.999876e-01   p_joint 3.613833e-04

Joint ci ratio: 1.104573e-01	ci left: 3.417951e-04	ci right 3.820324e-04	k: 1258	n:3480000
Cons ci ratio: 4.202764e-03	ci left: 1.995732e-01	ci right 2.004140e-01	k: 695977	n:3480000
KS ci ratio: 1.105452e-01	ci left: 3.412363e-04	ci right 3.814418e-04	k: 1256	n:3480000
CYP2J2   3480000 perm   5506 sec   (632 perm/sec)   p_kst 3.609195e-04   p_cons 1.999934e-01   p_joint 3.614943e-04

Joint ci ratio: 1.103260e-01	ci left: 3.416516e-04	ci right 3.818211e-04	k: 1261	n:3490000
Cons ci ratio: 4.196997e-03	ci left: 1.995541e-01	ci right 2.003937e-01	k: 697908	n:3490000
KS ci ratio: 1.103697e-01	ci left: 3.413730e-04	ci right 3.815267e-04	k: 1260	n:3490000
CYP2J2   3490000 perm   5533 sec   (631 perm/sec)   p_kst 3.610315e-04   p_cons 1.999736e-01   p_joint 3.613181e-04

Joint ci ratio: 1.101515e-01	ci left: 3.417868e-04	ci right 3.819045e-04	k: 1265	n:3500000
Cons ci ratio: 4.191165e-03	ci left: 1.995419e-01	ci right 2.003803e-01	k: 699863	n:3500000
KS ci ratio: 1.102387e-01	ci left: 3.412311e-04	ci right 3.813174e-04	k: 1263	n:3500000
CYP2J2   3500000 perm   5559 sec   (630 perm/sec)   p_kst 3.608571e-04   p_cons 1.999609e-01   p_joint 3.614286e-04

Joint ci ratio: 1.099779e-01	ci left: 3.419213e-04	ci right 3.819874e-04	k: 1269	n:3510000
Cons ci ratio: 4.185260e-03	ci left: 1.995372e-01	ci right 2.003744e-01	k: 701844	n:3510000
KS ci ratio: 1.099346e-01	ci left: 3.421983e-04	ci right 3.822802e-04	k: 1270	n:3510000
CYP2J2   3510000 perm   5586 sec   (628 perm/sec)   p_kst 3.618234e-04   p_cons 1.999556e-01   p_joint 3.615385e-04

Joint ci ratio: 1.098915e-01	ci left: 3.415025e-04	ci right 3.814861e-04	k: 1271	n:3520000
Cons ci ratio: 4.179227e-03	ci left: 1.995442e-01	ci right 2.003802e-01	k: 703866	n:3520000
KS ci ratio: 1.098483e-01	ci left: 3.417788e-04	ci right 3.817779e-04	k: 1272	n:3520000
CYP2J2   3520000 perm   5613 sec   (627 perm/sec)   p_kst 3.613636e-04   p_cons 1.999619e-01   p_joint 3.610795e-04

Joint ci ratio: 1.098483e-01	ci left: 3.408105e-04	ci right 3.806964e-04	k: 1272	n:3530000
Cons ci ratio: 4.173309e-03	ci left: 1.995443e-01	ci right 2.003791e-01	k: 705864	n:3530000
KS ci ratio: 1.097191e-01	ci left: 3.416371e-04	ci right 3.815696e-04	k: 1275	n:3530000
CYP2J2   3530000 perm   5643 sec   (626 perm/sec)   p_kst 3.611898e-04   p_cons 1.999615e-01   p_joint 3.603399e-04

Joint ci ratio: 9.153608e-02	ci left: 4.940908e-04	ci right 5.417607e-04	k: 1832	n:3540000
Cons ci ratio: 4.167343e-03	ci left: 1.995501e-01	ci right 2.003837e-01	k: 707882	n:3540000
KS ci ratio: 1.095475e-01	ci left: 3.417709e-04	ci right 3.816526e-04	k: 1279	n:3540000
CYP2J2   3540000 perm   5675 sec   (624 perm/sec)   p_kst 3.612994e-04   p_cons 1.999667e-01   p_joint 5.175141e-04

Joint ci ratio: 9.143638e-02	ci left: 4.937999e-04	ci right 5.413871e-04	k: 1836	n:3550000
Cons ci ratio: 4.161461e-03	ci left: 1.995514e-01	ci right 2.003838e-01	k: 709884	n:3550000
KS ci ratio: 1.094620e-01	ci left: 3.413562e-04	ci right 3.811564e-04	k: 1281	n:3550000
CYP2J2   3550000 perm   5706 sec   (622 perm/sec)   p_kst 3.608451e-04   p_cons 1.999673e-01   p_joint 5.171831e-04

Joint ci ratio: 9.136184e-02	ci left: 4.932363e-04	ci right 5.407284e-04	k: 1839	n:3560000
Cons ci ratio: 4.155812e-03	ci left: 1.995366e-01	ci right 2.003678e-01	k: 711829	n:3560000
KS ci ratio: 1.094621e-01	ci left: 3.403973e-04	ci right 3.800857e-04	k: 1281	n:3560000
CYP2J2   3560000 perm   5737 sec   (621 perm/sec)   p_kst 3.598315e-04   p_cons 1.999520e-01   p_joint 5.165730e-04

Joint ci ratio: 9.265567e-02	ci left: 4.778975e-04	ci right 5.245996e-04	k: 1788	n:3570000
Cons ci ratio: 4.149807e-03	ci left: 1.995510e-01	ci right 2.003811e-01	k: 713878	n:3570000
KS ci ratio: 1.093343e-01	ci left: 3.402611e-04	ci right 3.798844e-04	k: 1284	n:3570000
CYP2J2   3570000 perm   5766 sec   (619 perm/sec)   p_kst 3.596639e-04   p_cons 1.999658e-01   p_joint 5.008403e-04

Joint ci ratio: 9.333680e-02	ci left: 4.694688e-04	ci right 5.157029e-04	k: 1762	n:3580000
Cons ci ratio: 4.143782e-03	ci left: 1.995690e-01	ci right 2.003980e-01	k: 715940	n:3580000
KS ci ratio: 1.093343e-01	ci left: 3.393107e-04	ci right 3.788233e-04	k: 1284	n:3580000
CYP2J2   3580000 perm   5794 sec   (618 perm/sec)   p_kst 3.586592e-04   p_cons 1.999832e-01   p_joint 4.921788e-04

Joint ci ratio: 9.312571e-02	ci left: 4.703375e-04	ci right 5.165468e-04	k: 1770	n:3590000
Cons ci ratio: 4.137916e-03	ci left: 1.995766e-01	ci right 2.004044e-01	k: 717965	n:3590000
KS ci ratio: 1.090799e-01	ci left: 3.399912e-04	ci right 3.794850e-04	k: 1290	n:3590000
CYP2J2   3590000 perm   5824 sec   (616 perm/sec)   p_kst 3.593315e-04   p_cons 1.999903e-01   p_joint 4.930362e-04

Joint ci ratio: 9.373674e-02	ci left: 4.627914e-04	ci right 5.085739e-04	k: 1747	n:3600000
Cons ci ratio: 4.132028e-03	ci left: 1.995877e-01	ci right 2.004144e-01	k: 720003	n:3600000
KS ci ratio: 1.089534e-01	ci left: 3.398574e-04	ci right 3.792869e-04	k: 1293	n:3600000
CYP2J2   3600000 perm   5856 sec   (615 perm/sec)   p_kst 3.591667e-04   p_cons 2.000008e-01   p_joint 4.852778e-04

Joint ci ratio: 9.349630e-02	ci left: 4.639441e-04	ci right 5.097165e-04	k: 1756	n:3610000
Cons ci ratio: 4.126341e-03	ci left: 1.995853e-01	ci right 2.004108e-01	k: 721992	n:3610000
KS ci ratio: 1.085764e-01	ci left: 3.413412e-04	ci right 3.807971e-04	k: 1302	n:3610000
CYP2J2   3610000 perm   5888 sec   (613 perm/sec)   p_kst 3.606648e-04   p_cons 1.999978e-01   p_joint 4.864266e-04

Joint ci ratio: 9.333705e-02	ci left: 4.642812e-04	ci right 5.100046e-04	k: 1762	n:3620000
Cons ci ratio: 4.120712e-03	ci left: 1.995800e-01	ci right 2.004044e-01	k: 723971	n:3620000
KS ci ratio: 1.084516e-01	ci left: 3.412045e-04	ci right 3.805964e-04	k: 1305	n:3620000
CYP2J2   3620000 perm   5919 sec   (612 perm/sec)   p_kst 3.604972e-04   p_cons 1.999920e-01   p_joint 4.867403e-04

Joint ci ratio: 9.315228e-02	ci left: 4.648856e-04	ci right 5.105730e-04	k: 1769	n:3630000
Cons ci ratio: 4.115092e-03	ci left: 1.995760e-01	ci right 2.003992e-01	k: 725954	n:3630000
KS ci ratio: 1.083273e-01	ci left: 3.410686e-04	ci right 3.803967e-04	k: 1308	n:3630000
CYP2J2   3630000 perm   5949 sec   (610 perm/sec)   p_kst 3.603306e-04   p_cons 1.999873e-01   p_joint 4.873278e-04

Joint ci ratio: 9.302098e-02	ci left: 4.649501e-04	ci right 5.105759e-04	k: 1774	n:3640000
Cons ci ratio: 4.109470e-03	ci left: 1.995738e-01	ci right 2.003959e-01	k: 727944	n:3640000
KS ci ratio: 1.081621e-01	ci left: 3.412007e-04	ci right 3.804803e-04	k: 1312	n:3640000
CYP2J2   3640000 perm   5976 sec   (609 perm/sec)   p_kst 3.604396e-04   p_cons 1.999846e-01   p_joint 4.873626e-04

Joint ci ratio: 9.381763e-02	ci left: 4.556490e-04	ci right 5.007660e-04	k: 1744	n:3650000
Cons ci ratio: 4.103998e-03	ci left: 1.995618e-01	ci right 2.003828e-01	k: 729898	n:3650000
KS ci ratio: 1.080388e-01	ci left: 3.410656e-04	ci right 3.802821e-04	k: 1315	n:3650000
CYP2J2   3650000 perm   6004 sec   (608 perm/sec)   p_kst 3.602740e-04   p_cons 1.999721e-01   p_joint 4.778082e-04

Joint ci ratio: 9.544588e-02	ci left: 4.386651e-04	ci right 4.828964e-04	k: 1685	n:3660000
Cons ci ratio: 4.098317e-03	ci left: 1.995679e-01	ci right 2.003877e-01	k: 731918	n:3660000
KS ci ratio: 1.078750e-01	ci left: 3.411972e-04	ci right 3.803654e-04	k: 1319	n:3660000
CYP2J2   3660000 perm   6032 sec   (607 perm/sec)   p_kst 3.603825e-04   p_cons 1.999776e-01   p_joint 4.603825e-04

Joint ci ratio: 9.536109e-02	ci left: 4.382678e-04	ci right 4.824176e-04	k: 1688	n:3670000
Cons ci ratio: 4.093154e-03	ci left: 1.995353e-01	ci right 2.003540e-01	k: 733796	n:3670000
KS ci ratio: 1.078342e-01	ci left: 3.405326e-04	ci right 3.796088e-04	k: 1320	n:3670000
CYP2J2   3670000 perm   6060 sec   (606 perm/sec)   p_kst 3.596730e-04   p_cons 1.999444e-01   p_joint 4.599455e-04

Joint ci ratio: 9.524838e-02	ci left: 4.381379e-04	ci right 4.822195e-04	k: 1692	n:3680000
Cons ci ratio: 4.087743e-03	ci left: 1.995238e-01	ci right 2.003413e-01	k: 735751	n:3680000
KS ci ratio: 1.076713e-01	ci left: 3.406649e-04	ci right 3.796935e-04	k: 1324	n:3680000
CYP2J2   3680000 perm   6089 sec   (604 perm/sec)   p_kst 3.597826e-04   p_cons 1.999323e-01   p_joint 4.597826e-04

Joint ci ratio: 9.508003e-02	ci left: 4.385379e-04	ci right 4.825774e-04	k: 1698	n:3690000
Cons ci ratio: 4.082502e-03	ci left: 1.995007e-01	ci right 2.003171e-01	k: 737663	n:3690000
KS ci ratio: 1.075091e-01	ci left: 3.407965e-04	ci right 3.797777e-04	k: 1328	n:3690000
CYP2J2   3690000 perm   6117 sec   (603 perm/sec)   p_kst 3.598916e-04   p_cons 1.999087e-01   p_joint 4.601626e-04

Joint ci ratio: 9.764357e-02	ci left: 4.141416e-04	ci right 4.569168e-04	k: 1610	n:3700000
Cons ci ratio: 4.076999e-03	ci left: 1.994999e-01	ci right 2.003152e-01	k: 739657	n:3700000
KS ci ratio: 1.073477e-01	ci left: 3.409275e-04	ci right 3.798614e-04	k: 1332	n:3700000
CYP2J2   3700000 perm   6146 sec   (602 perm/sec)   p_kst 3.600000e-04   p_cons 1.999073e-01   p_joint 4.351351e-04

Joint ci ratio: 9.749239e-02	ci left: 4.143402e-04	ci right 4.570658e-04	k: 1615	n:3710000
Cons ci ratio: 4.071186e-03	ci left: 1.995252e-01	ci right 2.003394e-01	k: 741748	n:3710000
KS ci ratio: 1.072271e-01	ci left: 3.407955e-04	ci right 3.796679e-04	k: 1335	n:3710000
CYP2J2   3710000 perm   6174 sec   (601 perm/sec)   p_kst 3.598383e-04   p_cons 1.999321e-01   p_joint 4.353100e-04

Joint ci ratio: 9.734191e-02	ci left: 4.145377e-04	ci right 4.572139e-04	k: 1620	n:3720000
Cons ci ratio: 4.065578e-03	ci left: 1.995361e-01	ci right 2.003493e-01	k: 743786	n:3720000
KS ci ratio: 1.070669e-01	ci left: 3.409258e-04	ci right 3.797513e-04	k: 1339	n:3720000
CYP2J2   3720000 perm   6203 sec   (600 perm/sec)   p_kst 3.599462e-04   p_cons 1.999425e-01   p_joint 4.354839e-04

Joint ci ratio: 9.725198e-02	ci left: 4.142111e-04	ci right 4.568120e-04	k: 1623	n:3730000
Cons ci ratio: 4.060133e-03	ci left: 1.995360e-01	ci right 2.003481e-01	k: 745783	n:3730000
KS ci ratio: 1.069871e-01	ci left: 3.405336e-04	ci right 3.792838e-04	k: 1341	n:3730000
CYP2J2   3730000 perm   6231 sec   (599 perm/sec)   p_kst 3.595174e-04   p_cons 1.999418e-01   p_joint 4.351206e-04

Joint ci ratio: 9.707280e-02	ci left: 4.146689e-04	ci right 4.572338e-04	k: 1629	n:3740000
Cons ci ratio: 4.054770e-03	ci left: 1.995311e-01	ci right 2.003421e-01	k: 747762	n:3740000
KS ci ratio: 1.067884e-01	ci left: 3.409243e-04	ci right 3.796422e-04	k: 1346	n:3740000
CYP2J2   3740000 perm   6259 sec   (598 perm/sec)   p_kst 3.598930e-04   p_cons 1.999364e-01   p_joint 4.355615e-04

Joint ci ratio: 9.689461e-02	ci left: 4.151243e-04	ci right 4.576533e-04	k: 1635	n:3750000
Cons ci ratio: 4.049264e-03	ci left: 1.995393e-01	ci right 2.003492e-01	k: 749790	n:3750000
KS ci ratio: 1.065907e-01	ci left: 3.413129e-04	ci right 3.799988e-04	k: 1351	n:3750000
CYP2J2   3750000 perm   6289 sec   (596 perm/sec)   p_kst 3.602667e-04   p_cons 1.999440e-01   p_joint 4.360000e-04

Joint ci ratio: 9.671739e-02	ci left: 4.155773e-04	ci right 4.580705e-04	k: 1641	n:3760000
Cons ci ratio: 4.043732e-03	ci left: 1.995511e-01	ci right 2.003600e-01	k: 751832	n:3760000
KS ci ratio: 1.063941e-01	ci left: 3.416995e-04	ci right 3.803533e-04	k: 1356	n:3760000
CYP2J2   3760000 perm   6322 sec   (595 perm/sec)   p_kst 3.606383e-04   p_cons 1.999553e-01   p_joint 4.364362e-04

Joint ci ratio: 9.665858e-02	ci left: 4.149927e-04	ci right 4.573988e-04	k: 1643	n:3770000
Cons ci ratio: 4.038445e-03	ci left: 1.995454e-01	ci right 2.003532e-01	k: 753808	n:3770000
KS ci ratio: 1.063550e-01	ci left: 3.410514e-04	ci right 3.796167e-04	k: 1357	n:3770000
CYP2J2   3770000 perm   6353 sec   (593 perm/sec)   p_kst 3.599469e-04   p_cons 1.999491e-01   p_joint 4.358090e-04

Joint ci ratio: 9.654120e-02	ci left: 4.149274e-04	ci right 4.572725e-04	k: 1647	n:3780000
Cons ci ratio: 4.033054e-03	ci left: 1.995495e-01	ci right 2.003562e-01	k: 755821	n:3780000
KS ci ratio: 1.061597e-01	ci left: 3.414367e-04	ci right 3.799703e-04	k: 1362	n:3780000
CYP2J2   3780000 perm   6387 sec   (592 perm/sec)   p_kst 3.603175e-04   p_cons 1.999526e-01   p_joint 4.357143e-04

Joint ci ratio: 9.728228e-02	ci left: 4.073961e-04	ci right 4.493099e-04	k: 1622	n:3790000
Cons ci ratio: 4.027825e-03	ci left: 1.995426e-01	ci right 2.003481e-01	k: 757792	n:3790000
KS ci ratio: 1.060043e-01	ci left: 3.415632e-04	ci right 3.800512e-04	k: 1366	n:3790000
CYP2J2   3790000 perm   6420 sec   (590 perm/sec)   p_kst 3.604222e-04   p_cons 1.999451e-01   p_joint 4.279683e-04

Joint ci ratio: 9.719251e-02	ci left: 4.070943e-04	ci right 4.489362e-04	k: 1625	n:3800000
Cons ci ratio: 4.022470e-03	ci left: 1.995472e-01	ci right 2.003517e-01	k: 759807	n:3800000
KS ci ratio: 1.057724e-01	ci left: 3.422015e-04	ci right 3.806718e-04	k: 1372	n:3800000
CYP2J2   3800000 perm   6454 sec   (589 perm/sec)   p_kst 3.610526e-04   p_cons 1.999492e-01   p_joint 4.276316e-04

Joint ci ratio: 9.734241e-02	ci left: 4.047454e-04	ci right 4.464137e-04	k: 1620	n:3810000
Cons ci ratio: 4.017025e-03	ci left: 1.995607e-01	ci right 2.003642e-01	k: 761856	n:3810000
KS ci ratio: 1.056570e-01	ci left: 3.420699e-04	ci right 3.804809e-04	k: 1375	n:3810000
CYP2J2   3810000 perm   6486 sec   (587 perm/sec)   p_kst 3.608924e-04   p_cons 1.999622e-01   p_joint 4.251969e-04

Joint ci ratio: 9.716273e-02	ci left: 4.052183e-04	ci right 4.468539e-04	k: 1626	n:3820000
Cons ci ratio: 4.011591e-03	ci left: 1.995749e-01	ci right 2.003774e-01	k: 763908	n:3820000
KS ci ratio: 1.054274e-01	ci left: 3.427037e-04	ci right 3.810970e-04	k: 1381	n:3820000
CYP2J2   3820000 perm   6515 sec   (586 perm/sec)   p_kst 3.615183e-04   p_cons 1.999759e-01   p_joint 4.256545e-04

Joint ci ratio: 9.698405e-02	ci left: 4.056889e-04	ci right 4.472918e-04	k: 1632	n:3830000
Cons ci ratio: 4.006288e-03	ci left: 1.995805e-01	ci right 2.003819e-01	k: 765927	n:3830000
KS ci ratio: 1.051992e-01	ci left: 3.433342e-04	ci right 3.817098e-04	k: 1387	n:3830000
CYP2J2   3830000 perm   6545 sec   (585 perm/sec)   p_kst 3.621410e-04   p_cons 1.999809e-01   p_joint 4.261097e-04

Joint ci ratio: 9.677682e-02	ci left: 4.064111e-04	ci right 4.479940e-04	k: 1639	n:3840000
Cons ci ratio: 4.000983e-03	ci left: 1.995878e-01	ci right 2.003882e-01	k: 767953	n:3840000
KS ci ratio: 1.049726e-01	ci left: 3.439616e-04	ci right 3.823193e-04	k: 1393	n:3840000
CYP2J2   3840000 perm   6574 sec   (584 perm/sec)   p_kst 3.627604e-04   p_cons 1.999878e-01   p_joint 4.268229e-04

Joint ci ratio: 9.662962e-02	ci left: 4.066228e-04	ci right 4.481605e-04	k: 1644	n:3850000
Cons ci ratio: 3.995718e-03	ci left: 1.995935e-01	ci right 2.003929e-01	k: 769973	n:3850000
KS ci ratio: 1.047473e-01	ci left: 3.445857e-04	ci right 3.829255e-04	k: 1399	n:3850000
CYP2J2   3850000 perm   6607 sec   (583 perm/sec)   p_kst 3.633766e-04   p_cons 1.999930e-01   p_joint 4.270130e-04

Joint ci ratio: 9.648309e-02	ci left: 4.068335e-04	ci right 4.483261e-04	k: 1649	n:3860000
Cons ci ratio: 3.990610e-03	ci left: 1.995884e-01	ci right 2.003867e-01	k: 771951	n:3860000
KS ci ratio: 1.045236e-01	ci left: 3.452068e-04	ci right 3.835285e-04	k: 1405	n:3860000
CYP2J2   3860000 perm   6641 sec   (581 perm/sec)   p_kst 3.639896e-04   p_cons 1.999873e-01   p_joint 4.272021e-04

Joint ci ratio: 9.639551e-02	ci left: 4.065387e-04	ci right 4.479615e-04	k: 1652	n:3870000
Cons ci ratio: 3.985376e-03	ci left: 1.995949e-01	ci right 2.003922e-01	k: 773974	n:3870000
KS ci ratio: 1.043382e-01	ci left: 3.455730e-04	ci right 3.838632e-04	k: 1410	n:3870000
CYP2J2   3870000 perm   6676 sec   (580 perm/sec)   p_kst 3.643411e-04   p_cons 1.999933e-01   p_joint 4.268734e-04

Joint ci ratio: 9.619202e-02	ci left: 4.072516e-04	ci right 4.486545e-04	k: 1659	n:3880000
Cons ci ratio: 3.980336e-03	ci left: 1.995874e-01	ci right 2.003837e-01	k: 775943	n:3880000
KS ci ratio: 1.040436e-01	ci left: 3.466905e-04	ci right 3.849894e-04	k: 1418	n:3880000
CYP2J2   3880000 perm   6709 sec   (578 perm/sec)   p_kst 3.654639e-04   p_cons 1.999853e-01   p_joint 4.275773e-04

Joint ci ratio: 9.607634e-02	ci left: 4.072082e-04	ci right 4.485542e-04	k: 1663	n:3890000
Cons ci ratio: 3.975344e-03	ci left: 1.995777e-01	ci right 2.003729e-01	k: 777903	n:3890000
KS ci ratio: 1.040437e-01	ci left: 3.457992e-04	ci right 3.839998e-04	k: 1418	n:3890000
CYP2J2   3890000 perm   6742 sec   (577 perm/sec)   p_kst 3.645244e-04   p_cons 1.999751e-01   p_joint 4.275064e-04

Joint ci ratio: 9.598986e-02	ci left: 4.069149e-04	ci right 4.481917e-04	k: 1666	n:3900000
Cons ci ratio: 3.970208e-03	ci left: 1.995811e-01	ci right 2.003753e-01	k: 779914	n:3900000
KS ci ratio: 1.038973e-01	ci left: 3.459115e-04	ci right 3.840674e-04	k: 1422	n:3900000
CYP2J2   3900000 perm   6776 sec   (576 perm/sec)   p_kst 3.646154e-04   p_cons 1.999779e-01   p_joint 4.271795e-04

Joint ci ratio: 9.587491e-02	ci left: 4.068726e-04	ci right 4.480930e-04	k: 1670	n:3910000
Cons ci ratio: 3.965042e-03	ci left: 1.995885e-01	ci right 2.003817e-01	k: 781941	n:3910000
KS ci ratio: 1.037516e-01	ci left: 3.460233e-04	ci right 3.841348e-04	k: 1426	n:3910000
CYP2J2   3910000 perm   6810 sec   (574 perm/sec)   p_kst 3.647059e-04   p_cons 1.999849e-01   p_joint 4.271100e-04

Joint ci ratio: 9.581761e-02	ci left: 4.063327e-04	ci right 4.474724e-04	k: 1672	n:3920000
Cons ci ratio: 3.959933e-03	ci left: 1.995929e-01	ci right 2.003851e-01	k: 783956	n:3920000
KS ci ratio: 1.036427e-01	ci left: 3.458861e-04	ci right 3.839400e-04	k: 1429	n:3920000
CYP2J2   3920000 perm   6840 sec   (573 perm/sec)   p_kst 3.645408e-04   p_cons 1.999888e-01   p_joint 4.265306e-04

Joint ci ratio: 9.576042e-02	ci left: 4.057955e-04	ci right 4.468548e-04	k: 1674	n:3930000
Cons ci ratio: 3.954983e-03	ci left: 1.995861e-01	ci right 2.003772e-01	k: 785927	n:3930000
KS ci ratio: 1.035703e-01	ci left: 3.455017e-04	ci right 3.834851e-04	k: 1431	n:3930000
CYP2J2   3930000 perm   6869 sec   (572 perm/sec)   p_kst 3.641221e-04   p_cons 1.999814e-01   p_joint 4.259542e-04

Joint ci ratio: 9.558935e-02	ci left: 4.062519e-04	ci right 4.472800e-04	k: 1680	n:3940000
Cons ci ratio: 3.949891e-03	ci left: 1.995922e-01	ci right 2.003824e-01	k: 787949	n:3940000
KS ci ratio: 1.033900e-01	ci left: 3.458609e-04	ci right 3.838137e-04	k: 1436	n:3940000
CYP2J2   3940000 perm   6900 sec   (571 perm/sec)   p_kst 3.644670e-04   p_cons 1.999871e-01   p_joint 4.263959e-04

Joint ci ratio: 9.539091e-02	ci left: 4.069533e-04	ci right 4.479621e-04	k: 1687	n:3950000
Cons ci ratio: 3.944710e-03	ci left: 1.996071e-01	ci right 2.003963e-01	k: 790006	n:3950000
KS ci ratio: 1.032464e-01	ci left: 3.459718e-04	ci right 3.838808e-04	k: 1440	n:3950000
CYP2J2   3950000 perm   6930 sec   (570 perm/sec)   p_kst 3.645570e-04   p_cons 2.000015e-01   p_joint 4.270886e-04

Joint ci ratio: 9.527809e-02	ci left: 4.069116e-04	ci right 4.478650e-04	k: 1691	n:3960000
Cons ci ratio: 3.939593e-03	ci left: 1.996185e-01	ci right 2.004067e-01	k: 792049	n:3960000
KS ci ratio: 1.032106e-01	ci left: 3.453442e-04	ci right 3.831704e-04	k: 1441	n:3960000
CYP2J2   3960000 perm   6961 sec   (569 perm/sec)   p_kst 3.638889e-04   p_cons 2.000124e-01   p_joint 4.270202e-04

Joint ci ratio: 9.510958e-02	ci left: 4.073620e-04	ci right 4.482842e-04	k: 1697	n:3970000
Cons ci ratio: 3.934811e-03	ci left: 1.996041e-01	ci right 2.003913e-01	k: 793990	n:3970000
KS ci ratio: 1.030677e-01	ci left: 3.454559e-04	ci right 3.832388e-04	k: 1445	n:3970000
CYP2J2   3970000 perm   6991 sec   (568 perm/sec)   p_kst 3.639798e-04   p_cons 1.999975e-01   p_joint 4.274559e-04

Joint ci ratio: 9.494197e-02	ci left: 4.078102e-04	ci right 4.487012e-04	k: 1703	n:3980000
Cons ci ratio: 3.929935e-03	ci left: 1.995988e-01	ci right 2.003850e-01	k: 795967	n:3980000
KS ci ratio: 1.028900e-01	ci left: 3.458118e-04	ci right 3.835645e-04	k: 1450	n:3980000
CYP2J2   3980000 perm   7025 sec   (567 perm/sec)   p_kst 3.643216e-04   p_cons 1.999917e-01   p_joint 4.278894e-04

Joint ci ratio: 9.485852e-02	ci left: 4.075222e-04	ci right 4.483464e-04	k: 1706	n:3990000
Cons ci ratio: 3.925038e-03	ci left: 1.995968e-01	ci right 2.003820e-01	k: 797957	n:3990000
KS ci ratio: 1.028192e-01	ci left: 3.454335e-04	ci right 3.831174e-04	k: 1452	n:3990000
CYP2J2   3990000 perm   7060 sec   (565 perm/sec)   p_kst 3.639098e-04   p_cons 1.999892e-01   p_joint 4.275689e-04

Joint ci ratio: 9.474758e-02	ci left: 4.074797e-04	ci right 4.482492e-04	k: 1710	n:4000000
Cons ci ratio: 3.920254e-03	ci left: 1.995871e-01	ci right 2.003713e-01	k: 799916	n:4000000
KS ci ratio: 1.027132e-01	ci left: 3.453006e-04	ci right 3.829288e-04	k: 1455	n:4000000
CYP2J2   4000000 perm   7095 sec   (564 perm/sec)   p_kst 3.637500e-04   p_cons 1.999790e-01   p_joint 4.275000e-04

Joint ci ratio: 9.541949e-02	ci left: 4.006207e-04	ci right 4.410041e-04	k: 1686	n:4010000
Cons ci ratio: 3.915472e-03	ci left: 1.995787e-01	ci right 2.003619e-01	k: 801880	n:4010000
KS ci ratio: 1.026428e-01	ci left: 3.449254e-04	ci right 3.824855e-04	k: 1457	n:4010000
CYP2J2   4010000 perm   7131 sec   (562 perm/sec)   p_kst 3.633416e-04   p_cons 1.999701e-01   p_joint 4.204489e-04

Joint ci ratio: 9.527839e-02	ci left: 4.008383e-04	ci right 4.411805e-04	k: 1691	n:4020000
Cons ci ratio: 3.910896e-03	ci left: 1.995549e-01	ci right 2.003371e-01	k: 803782	n:4020000
KS ci ratio: 1.025022e-01	ci left: 3.450369e-04	ci right 3.825546e-04	k: 1461	n:4020000
CYP2J2   4020000 perm   7166 sec   (561 perm/sec)   p_kst 3.634328e-04   p_cons 1.999458e-01   p_joint 4.206468e-04

Joint ci ratio: 9.516597e-02	ci left: 4.008126e-04	ci right 4.411020e-04	k: 1695	n:4030000
Cons ci ratio: 3.905894e-03	ci left: 1.995674e-01	ci right 2.003487e-01	k: 805830	n:4030000
KS ci ratio: 1.023274e-01	ci left: 3.453897e-04	ci right 3.828777e-04	k: 1466	n:4030000
CYP2J2   4030000 perm   7201 sec   (560 perm/sec)   p_kst 3.637717e-04   p_cons 1.999578e-01   p_joint 4.205955e-04

Joint ci ratio: 9.494227e-02	ci left: 4.017536e-04	ci right 4.420374e-04	k: 1703	n:4040000
Cons ci ratio: 3.900953e-03	ci left: 1.995764e-01	ci right 2.003567e-01	k: 807864	n:4040000
KS ci ratio: 1.021534e-01	ci left: 3.457407e-04	ci right 3.831993e-04	k: 1471	n:4040000
CYP2J2   4040000 perm   7234 sec   (558 perm/sec)   p_kst 3.641089e-04   p_cons 1.999663e-01   p_joint 4.215347e-04

Joint ci ratio: 9.483103e-02	ci left: 4.017258e-04	ci right 4.419570e-04	k: 1707	n:4050000
Cons ci ratio: 3.896217e-03	ci left: 1.995701e-01	ci right 2.003494e-01	k: 809836	n:4050000
KS ci ratio: 1.019458e-01	ci left: 3.463307e-04	ci right 3.837724e-04	k: 1477	n:4050000
CYP2J2   4050000 perm   7264 sec   (558 perm/sec)   p_kst 3.646914e-04   p_cons 1.999595e-01   p_joint 4.214815e-04

Joint ci ratio: 9.472019e-02	ci left: 4.016982e-04	ci right 4.418770e-04	k: 1711	n:4060000
Cons ci ratio: 3.891454e-03	ci left: 1.995674e-01	ci right 2.003458e-01	k: 811823	n:4060000
KS ci ratio: 1.018082e-01	ci left: 3.464378e-04	ci right 3.838374e-04	k: 1481	n:4060000
CYP2J2   4060000 perm   7299 sec   (556 perm/sec)   p_kst 3.647783e-04   p_cons 1.999564e-01   p_joint 4.214286e-04

Joint ci ratio: 9.466493e-02	ci left: 4.011910e-04	ci right 4.412944e-04	k: 1713	n:4070000
Cons ci ratio: 3.886618e-03	ci left: 1.995722e-01	ci right 2.003496e-01	k: 813840	n:4070000
KS ci ratio: 1.017053e-01	ci left: 3.463050e-04	ci right 3.836502e-04	k: 1484	n:4070000
CYP2J2   4070000 perm   7334 sec   (555 perm/sec)   p_kst 3.646192e-04   p_cons 1.999607e-01   p_joint 4.208845e-04

Joint ci ratio: 9.458221e-02	ci left: 4.009256e-04	ci right 4.409655e-04	k: 1716	n:4080000
Cons ci ratio: 3.881866e-03	ci left: 1.995715e-01	ci right 2.003480e-01	k: 815835	n:4080000
KS ci ratio: 1.016027e-01	ci left: 3.461728e-04	ci right 3.834639e-04	k: 1487	n:4080000
CYP2J2   4080000 perm   7367 sec   (554 perm/sec)   p_kst 3.644608e-04   p_cons 1.999596e-01   p_joint 4.205882e-04

Joint ci ratio: 9.458226e-02	ci left: 3.999453e-04	ci right 4.398873e-04	k: 1716	n:4090000
Cons ci ratio: 3.877255e-03	ci left: 1.995606e-01	ci right 2.003361e-01	k: 817788	n:4090000
KS ci ratio: 1.015686e-01	ci left: 3.455647e-04	ci right 3.827770e-04	k: 1488	n:4090000
CYP2J2   4090000 perm   7399 sec   (553 perm/sec)   p_kst 3.638142e-04   p_cons 1.999482e-01   p_joint 4.195599e-04

Joint ci ratio: 9.449975e-02	ci left: 3.996842e-04	ci right 4.395634e-04	k: 1719	n:4100000
Cons ci ratio: 3.872502e-03	ci left: 1.995629e-01	ci right 2.003375e-01	k: 819795	n:4100000
KS ci ratio: 1.014665e-01	ci left: 3.454349e-04	ci right 3.825937e-04	k: 1491	n:4100000
CYP2J2   4100000 perm   7434 sec   (552 perm/sec)   p_kst 3.636585e-04   p_cons 1.999500e-01   p_joint 4.192683e-04

Joint ci ratio: 9.441746e-02	ci left: 3.994245e-04	ci right 4.392411e-04	k: 1722	n:4110000
Cons ci ratio: 3.867869e-03	ci left: 1.995567e-01	ci right 2.003303e-01	k: 821767	n:4110000
KS ci ratio: 1.013646e-01	ci left: 3.453059e-04	ci right 3.824113e-04	k: 1494	n:4110000
CYP2J2   4110000 perm   7470 sec   (550 perm/sec)   p_kst 3.635036e-04   p_cons 1.999433e-01   p_joint 4.189781e-04

Joint ci ratio: 9.419899e-02	ci left: 4.003509e-04	ci right 4.401625e-04	k: 1730	n:4120000
Cons ci ratio: 3.863109e-03	ci left: 1.995624e-01	ci right 2.003351e-01	k: 823788	n:4120000
KS ci ratio: 1.011618e-01	ci left: 3.458872e-04	ci right 3.829762e-04	k: 1500	n:4120000
CYP2J2   4120000 perm   7505 sec   (549 perm/sec)   p_kst 3.640777e-04   p_cons 1.999485e-01   p_joint 4.199029e-04

Joint ci ratio: 9.406322e-02	ci left: 4.005637e-04	ci right 4.403359e-04	k: 1735	n:4130000
Cons ci ratio: 3.858273e-03	ci left: 1.995758e-01	ci right 2.003476e-01	k: 825841	n:4130000
KS ci ratio: 1.009937e-01	ci left: 3.462298e-04	ci right 3.832902e-04	k: 1505	n:4130000
CYP2J2   4130000 perm   7541 sec   (548 perm/sec)   p_kst 3.644068e-04   p_cons 1.999615e-01   p_joint 4.200969e-04

Joint ci ratio: 9.387412e-02	ci left: 4.012473e-04	ci right 4.410028e-04	k: 1742	n:4140000
Cons ci ratio: 3.853548e-03	ci left: 1.995815e-01	ci right 2.003523e-01	k: 827862	n:4140000
KS ci ratio: 1.007265e-01	ci left: 3.472771e-04	ci right 3.843454e-04	k: 1513	n:4140000
CYP2J2   4140000 perm   7577 sec   (546 perm/sec)   p_kst 3.654589e-04   p_cons 1.999667e-01   p_joint 4.207729e-04

Joint ci ratio: 9.365939e-02	ci left: 4.021629e-04	ci right 4.419130e-04	k: 1750	n:4150000
Cons ci ratio: 3.848823e-03	ci left: 1.995885e-01	ci right 2.003584e-01	k: 829889	n:4150000
KS ci ratio: 1.005275e-01	ci left: 3.478497e-04	ci right 3.849015e-04	k: 1519	n:4150000
CYP2J2   4150000 perm   7614 sec   (545 perm/sec)   p_kst 3.660241e-04   p_cons 1.999733e-01   p_joint 4.216867e-04

Joint ci ratio: 9.355259e-02	ci left: 4.021352e-04	ci right 4.418348e-04	k: 1754	n:4160000
Cons ci ratio: 3.844150e-03	ci left: 1.995926e-01	ci right 2.003616e-01	k: 831904	n:4160000
KS ci ratio: 1.003954e-01	ci left: 3.479509e-04	ci right 3.849619e-04	k: 1523	n:4160000
CYP2J2   4160000 perm   7651 sec   (544 perm/sec)   p_kst 3.661058e-04   p_cons 1.999769e-01   p_joint 4.216346e-04

Joint ci ratio: 9.344616e-02	ci left: 4.021077e-04	ci right 4.417569e-04	k: 1758	n:4170000
Cons ci ratio: 3.839446e-03	ci left: 1.996008e-01	ci right 2.003689e-01	k: 833936	n:4170000
KS ci ratio: 1.003296e-01	ci left: 3.475840e-04	ci right 3.845304e-04	k: 1525	n:4170000
CYP2J2   4170000 perm   7685 sec   (543 perm/sec)   p_kst 3.657074e-04   p_cons 1.999847e-01   p_joint 4.215827e-04

Joint ci ratio: 9.331363e-02	ci left: 4.023139e-04	ci right 4.419241e-04	k: 1763	n:4180000
Cons ci ratio: 3.834738e-03	ci left: 1.996107e-01	ci right 2.003778e-01	k: 835975	n:4180000
KS ci ratio: 1.001330e-01	ci left: 3.481519e-04	ci right 3.850818e-04	k: 1531	n:4180000
CYP2J2   4180000 perm   7717 sec   (542 perm/sec)   p_kst 3.662679e-04   p_cons 1.999940e-01   p_joint 4.217703e-04

Joint ci ratio: 9.323439e-02	ci left: 4.020530e-04	ci right 4.416021e-04	k: 1766	n:4190000
Cons ci ratio: 3.829996e-03	ci left: 1.996247e-01	ci right 2.003910e-01	k: 838032	n:4190000
KS ci ratio: 1.000677e-01	ci left: 3.477864e-04	ci right 3.846521e-04	k: 1533	n:4190000
CYP2J2   4190000 perm   7749 sec   (541 perm/sec)   p_kst 3.658711e-04   p_cons 2.000076e-01   p_joint 4.214797e-04

Joint ci ratio: 9.312905e-02	ci left: 4.020260e-04	ci right 4.415252e-04	k: 1770	n:4200000
Cons ci ratio: 3.825468e-03	ci left: 1.996223e-01	ci right 2.003876e-01	k: 840020	n:4200000
KS ci ratio: 9.993746e-02	ci left: 3.478869e-04	ci right 3.847124e-04	k: 1537	n:4200000
CYP2J2   4200000 perm   7781 sec   (540 perm/sec)   p_kst 3.659524e-04   p_cons 2.000048e-01   p_joint 4.214286e-04

Outputting figure to mutsig2_images.part000000000046/CYP2J2.8_1545_4200000_0.00036595_0.2_0.00042143.png
                gene_name: CYP2J2
               theta_stop: 0.100 
                    nperm: 4200000 
                     p_ks: 0.00037 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00038 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.00042 
     ci_joint_bounds_left: 0.00040 
    ci_joint_bounds_right: 0.00044 

Current progress: 16 percent done.
CYP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
Cons ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
CYP4B1   10000 perm   2 sec   (6281 perm/sec)   p_kst 1.361000e-01   p_cons 2.543000e-01   p_joint 2.667000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4B1.8_1587_10000_0.1361_0.2543_0.2667.png
                gene_name: CYP4B1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 17 percent done.
CYBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
Cons ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
KS ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
CYBB   10000 perm   2 sec   (6181 perm/sec)   p_kst 6.126000e-01   p_cons 9.280000e-02   p_joint 4.271000e-01

Joint ci ratio: 4.409280e-02	ci left: 2.769626e-01	ci right 2.895004e-01	k: 5664	n:20000
Cons ci ratio: 8.808395e-02	ci left: 8.611760e-02	ci right 9.410203e-02	k: 1801	n:20000
KS ci ratio: 2.218565e-02	ci left: 6.026982e-01	ci right 6.162700e-01	k: 12190	n:20000
CYBB   20000 perm   4 sec   (5595 perm/sec)   p_kst 6.095000e-01   p_cons 9.005000e-02   p_joint 2.832000e-01

Outputting figure to mutsig2_images.part000000000046/CYBB.7_1765_20000_0.6095_0.09005_0.2832.png
                gene_name: CYBB
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 19 percent done.
CYFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
CYFIP1   10000 perm   2 sec   (5595 perm/sec)   p_kst 8.212000e-01   p_cons 2.259000e-01   p_joint 5.397000e-01

Outputting figure to mutsig2_images.part000000000046/CYFIP1.7_4263_10000_0.8212_0.2259_0.5397.png
                gene_name: CYFIP1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 21 percent done.
CYLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
CYLC2   10000 perm   1 sec   (6928 perm/sec)   p_kst 8.723000e-01   p_cons 4.586000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYLC2.7_1067_10000_0.8723_0.4586_1.png
                gene_name: CYLC2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
CYP11B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.229455e-02	ci left: 4.521908e-01	ci right 4.718314e-01	k: 4620	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
CYP11B2   10000 perm   2 sec   (6318 perm/sec)   p_kst 2.889000e-01   p_cons 5.750000e-01   p_joint 4.620000e-01

Outputting figure to mutsig2_images.part000000000046/CYP11B2.7_1548_10000_0.2889_0.575_0.462.png
                gene_name: CYP11B2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 24 percent done.
CYP7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
Cons ci ratio: 2.604643e-02	ci left: 6.845600e-01	ci right 7.027271e-01	k: 6937	n:10000
KS ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
CYP7A1   10000 perm   2 sec   (5809 perm/sec)   p_kst 4.349000e-01   p_cons 6.937000e-01   p_joint 6.178000e-01

Outputting figure to mutsig2_images.part000000000046/CYP7A1.7_1539_10000_0.4349_0.6937_0.6178.png
                gene_name: CYP7A1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
CYP1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
CYP1A1   10000 perm   1 sec   (6680 perm/sec)   p_kst 1.277000e-01   p_cons 3.713000e-01   p_joint 2.619000e-01

Joint ci ratio: 6.021413e-02	ci left: 1.695589e-01	ci right 1.801358e-01	k: 3496	n:20000
Cons ci ratio: 3.542485e-02	ci left: 3.729669e-01	ci right 3.864681e-01	k: 7594	n:20000
KS ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
CYP1A1   20000 perm   3 sec   (5937 perm/sec)   p_kst 1.302500e-01   p_cons 3.797000e-01   p_joint 1.748000e-01

Outputting figure to mutsig2_images.part000000000046/CYP1A1.6_1563_20000_0.13025_0.3797_0.1748.png
                gene_name: CYP1A1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 27 percent done.
CYP46A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
Cons ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
CYP46A1   10000 perm   1 sec   (6680 perm/sec)   p_kst 1.220000e-02   p_cons 4.632000e-01   p_joint 3.690000e-02

Joint ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
Cons ci ratio: 2.868109e-02	ci left: 4.759524e-01	ci right 4.898525e-01	k: 9658	n:20000
KS ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
CYP46A1   20000 perm   3 sec   (6004 perm/sec)   p_kst 1.180000e-02   p_cons 4.829000e-01   p_joint 3.695000e-02

Joint ci ratio: 1.298092e-01	ci left: 2.758204e-02	ci right 3.144312e-02	k: 884	n:30000
Cons ci ratio: 2.416107e-02	ci left: 4.616742e-01	ci right 4.729988e-01	k: 14020	n:30000
KS ci ratio: 1.927416e-01	ci left: 1.228821e-02	ci right 1.494055e-02	k: 407	n:30000
CYP46A1   30000 perm   5 sec   (5732 perm/sec)   p_kst 1.356667e-02   p_cons 4.673333e-01   p_joint 2.946667e-02

Joint ci ratio: 1.236749e-01	ci left: 2.298284e-02	ci right 2.603672e-02	k: 979	n:40000
Cons ci ratio: 2.091633e-02	ci left: 4.626254e-01	ci right 4.724293e-01	k: 18701	n:40000
KS ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
CYP46A1   40000 perm   7 sec   (5539 perm/sec)   p_kst 1.327500e-02   p_cons 4.675250e-01   p_joint 2.447500e-02

Joint ci ratio: 1.040943e-01	ci left: 2.614254e-02	ci right 2.903266e-02	k: 1378	n:50000
Cons ci ratio: 1.872953e-02	ci left: 4.625790e-01	ci right 4.713448e-01	k: 23348	n:50000
KS ci ratio: 1.500831e-01	ci left: 1.244901e-02	ci right 1.448805e-02	k: 672	n:50000
CYP46A1   50000 perm   9 sec   (5380 perm/sec)   p_kst 1.344000e-02   p_cons 4.669600e-01   p_joint 2.756000e-02

Joint ci ratio: 8.323283e-02	ci left: 3.416422e-02	ci right 3.714758e-02	k: 2138	n:60000
Cons ci ratio: 1.708607e-02	ci left: 4.633011e-01	ci right 4.713020e-01	k: 28038	n:60000
KS ci ratio: 1.368865e-01	ci left: 1.255965e-02	ci right 1.442118e-02	k: 808	n:60000
CYP46A1   60000 perm   11 sec   (5250 perm/sec)   p_kst 1.346667e-02   p_cons 4.673000e-01   p_joint 3.563333e-02

Joint ci ratio: 8.677238e-02	ci left: 2.709797e-02	ci right 2.956991e-02	k: 1982	n:70000
Cons ci ratio: 1.583095e-02	ci left: 4.632127e-01	ci right 4.706186e-01	k: 32684	n:70000
KS ci ratio: 1.255135e-01	ci left: 1.287962e-02	ci right 1.461817e-02	k: 961	n:70000
CYP46A1   70000 perm   14 sec   (5140 perm/sec)   p_kst 1.372857e-02   p_cons 4.669143e-01   p_joint 2.831429e-02

Joint ci ratio: 7.636445e-02	ci left: 3.066846e-02	ci right 3.311564e-02	k: 2550	n:80000
Cons ci ratio: 1.478816e-02	ci left: 4.641375e-01	ci right 4.710649e-01	k: 37408	n:80000
KS ci ratio: 1.179210e-01	ci left: 1.282096e-02	ci right 1.443959e-02	k: 1089	n:80000
CYP46A1   80000 perm   16 sec   (5036 perm/sec)   p_kst 1.361250e-02   p_cons 4.676000e-01   p_joint 3.187500e-02

Joint ci ratio: 7.338028e-02	ci left: 2.960441e-02	ci right 3.187041e-02	k: 2765	n:90000
Cons ci ratio: 1.396611e-02	ci left: 4.634917e-01	ci right 4.700215e-01	k: 42008	n:90000
KS ci ratio: 1.118845e-01	ci left: 1.270218e-02	ci right 1.421830e-02	k: 1210	n:90000
CYP46A1   90000 perm   18 sec   (4935 perm/sec)   p_kst 1.344444e-02   p_cons 4.667556e-01   p_joint 3.072222e-02

Joint ci ratio: 5.899052e-02	ci left: 4.104109e-02	ci right 4.354554e-02	k: 4228	n:100000
Cons ci ratio: 1.323549e-02	ci left: 4.641837e-01	ci right 4.703782e-01	k: 46728	n:100000
KS ci ratio: 1.064464e-01	ci left: 1.266729e-02	ci right 1.410114e-02	k: 1337	n:100000
CYP46A1   100000 perm   21 sec   (4843 perm/sec)   p_kst 1.337000e-02   p_cons 4.672800e-01   p_joint 4.228000e-02

Joint ci ratio: 6.009857e-02	ci left: 3.611616e-02	ci right 3.836287e-02	k: 4095	n:110000
Cons ci ratio: 1.261306e-02	ci left: 4.645842e-01	ci right 4.704903e-01	k: 51429	n:110000
KS ci ratio: 1.020138e-01	ci left: 1.256930e-02	ci right 1.392927e-02	k: 1456	n:110000
CYP46A1   110000 perm   23 sec   (4757 perm/sec)   p_kst 1.323636e-02   p_cons 4.675364e-01   p_joint 3.722727e-02

Joint ci ratio: 5.656344e-02	ci left: 3.739375e-02	ci right 3.957862e-02	k: 4617	n:120000
Cons ci ratio: 1.206547e-02	ci left: 4.651485e-01	ci right 4.708031e-01	k: 56157	n:120000
KS ci ratio: 9.759165e-02	ci left: 1.261880e-02	ci right 1.392154e-02	k: 1591	n:120000
CYP46A1   120000 perm   26 sec   (4673 perm/sec)   p_kst 1.325833e-02   p_cons 4.679750e-01   p_joint 3.847500e-02

Outputting figure to mutsig2_images.part000000000046/CYP46A1.6_1563_120000_0.013258_0.46797_0.038475.png
                gene_name: CYP46A1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 29 percent done.
CYB5R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
CYB5R4   10000 perm   2 sec   (6385 perm/sec)   p_kst 8.702000e-01   p_cons 5.095000e-01   p_joint 8.125000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5R4.5_1630_10000_0.8702_0.5095_0.8125.png
                gene_name: CYB5R4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
CYLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
Cons ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
KS ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
CYLD   10000 perm   2 sec   (6135 perm/sec)   p_kst 8.890000e-02   p_cons 3.194000e-01   p_joint 1.700000e-01

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 4.031372e-02	ci left: 3.144814e-01	ci right 3.274707e-01	k: 6419	n:20000
KS ci ratio: 8.843498e-02	ci left: 8.548063e-02	ci right 9.343920e-02	k: 1788	n:20000
CYLD   20000 perm   4 sec   (5492 perm/sec)   p_kst 8.940000e-02   p_cons 3.209500e-01   p_joint 1.290000e-01

Outputting figure to mutsig2_images.part000000000046/CYLD.5_2939_20000_0.0894_0.32095_0.129.png
                gene_name: CYLD
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
CYP26A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
CYP26A1   10000 perm   2 sec   (6470 perm/sec)   p_kst 6.811000e-01   p_cons 6.965000e-01   p_joint 8.890000e-01

Outputting figure to mutsig2_images.part000000000046/CYP26A1.5_1522_10000_0.6811_0.6965_0.889.png
                gene_name: CYP26A1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 33 percent done.
CYP27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
CYP27A1   10000 perm   2 sec   (6377 perm/sec)   p_kst 2.203000e-01   p_cons 2.880000e-02   p_joint 7.310000e-02

Joint ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
Cons ci ratio: 1.557474e-01	ci left: 2.830458e-02	ci right 3.313313e-02	k: 613	n:20000
KS ci ratio: 5.197982e-02	ci left: 2.156122e-01	ci right 2.271689e-01	k: 4427	n:20000
CYP27A1   20000 perm   3 sec   (5739 perm/sec)   p_kst 2.213500e-01   p_cons 3.065000e-02   p_joint 1.114000e-01

Joint ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
Cons ci ratio: 1.322943e-01	ci left: 2.654940e-02	ci right 3.034265e-02	k: 852	n:30000
KS ci ratio: 4.246203e-02	ci left: 2.165138e-01	ci right 2.259402e-01	k: 6636	n:30000
CYP27A1   30000 perm   5 sec   (5495 perm/sec)   p_kst 2.212000e-01   p_cons 2.840000e-02   p_joint 6.140000e-02

Joint ci ratio: 6.568833e-02	ci left: 7.905832e-02	ci right 8.445258e-02	k: 3269	n:40000
Cons ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
KS ci ratio: 3.651462e-02	ci left: 2.195742e-01	ci right 2.277660e-01	k: 8946	n:40000
CYP27A1   40000 perm   8 sec   (5318 perm/sec)   p_kst 2.236500e-01   p_cons 2.932500e-02   p_joint 8.172500e-02

Joint ci ratio: 6.060126e-02	ci left: 7.487508e-02	ci right 7.957414e-02	k: 3860	n:50000
Cons ci ratio: 1.008679e-01	ci left: 2.783916e-02	ci right 3.081582e-02	k: 1465	n:50000
KS ci ratio: 3.279335e-02	ci left: 2.186020e-01	ci right 2.259102e-01	k: 11112	n:50000
CYP27A1   50000 perm   10 sec   (5187 perm/sec)   p_kst 2.222400e-01   p_cons 2.930000e-02   p_joint 7.720000e-02

Joint ci ratio: 5.990263e-02	ci left: 6.461766e-02	ci right 6.862438e-02	k: 3996	n:60000
Cons ci ratio: 9.213890e-02	ci left: 2.793246e-02	ci right 3.064666e-02	k: 1756	n:60000
KS ci ratio: 2.999628e-02	ci left: 2.182322e-01	ci right 2.248947e-01	k: 13293	n:60000
CYP27A1   60000 perm   12 sec   (5063 perm/sec)   p_kst 2.215500e-01   p_cons 2.926667e-02   p_joint 6.660000e-02

Outputting figure to mutsig2_images.part000000000046/CYP27A1.5_1632_60000_0.22155_0.029267_0.0666.png
                gene_name: CYP27A1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 35 percent done.
CYP4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
KS ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
CYP4F2   10000 perm   1 sec   (6795 perm/sec)   p_kst 3.407000e-01   p_cons 6.811000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F2.5_1611_10000_0.3407_0.6811_0.5606.png
                gene_name: CYP4F2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 37 percent done.
CYP4F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
KS ci ratio: 2.489353e-02	ci left: 7.036192e-01	ci right 7.214569e-01	k: 7126	n:10000
CYP4F8   10000 perm   2 sec   (6426 perm/sec)   p_kst 7.126000e-01   p_cons 6.366000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP4F8.5_1610_10000_0.7126_0.6366_1.png
                gene_name: CYP4F8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CYP7B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
Cons ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
KS ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
CYP7B1   10000 perm   2 sec   (6461 perm/sec)   p_kst 8.737000e-01   p_cons 5.117000e-01   p_joint 9.783000e-01

Outputting figure to mutsig2_images.part000000000046/CYP7B1.5_1545_10000_0.8737_0.5117_0.9783.png
                gene_name: CYP7B1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 40 percent done.
CYTH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
Cons ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KS ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
CYTH1   10000 perm   1 sec   (7286 perm/sec)   p_kst 8.968000e-01   p_cons 1.597000e-01   p_joint 3.396000e-01

Outputting figure to mutsig2_images.part000000000046/CYTH1.5_1249_10000_0.8968_0.1597_0.3396.png
                gene_name: CYTH1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
CYTSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
Cons ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
CYTSB   10000 perm   2 sec   (5783 perm/sec)   p_kst 7.510000e-02   p_cons 3.288000e-01   p_joint 1.172000e-01

Joint ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
Cons ci ratio: 3.898782e-02	ci left: 3.291546e-01	ci right 3.422932e-01	k: 6714	n:20000
KS ci ratio: 9.364690e-02	ci left: 7.676561e-02	ci right 8.435686e-02	k: 1610	n:20000
CYTSB   20000 perm   4 sec   (5231 perm/sec)   p_kst 8.050000e-02   p_cons 3.357000e-01   p_joint 1.306500e-01

Outputting figure to mutsig2_images.part000000000046/CYTSB.5_3333_20000_0.0805_0.3357_0.13065.png
                gene_name: CYTSB
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
CYP20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
KS ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
CYP20A1   10000 perm   1 sec   (6825 perm/sec)   p_kst 7.359000e-01   p_cons 5.753000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP20A1.4_1441_10000_0.7359_0.5753_1.png
                gene_name: CYP20A1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CYP24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
Cons ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
KS ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
CYP24A1   10000 perm   1 sec   (6817 perm/sec)   p_kst 2.292000e-01   p_cons 9.921000e-01   p_joint 4.790000e-01

Outputting figure to mutsig2_images.part000000000046/CYP24A1.4_1589_10000_0.2292_0.9921_0.479.png
                gene_name: CYP24A1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 46 percent done.
CYP2A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
Cons ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
KS ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
CYP2A13   10000 perm   1 sec   (7161 perm/sec)   p_kst 3.608000e-01   p_cons 5.334000e-01   p_joint 5.406000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A13.4_1521_10000_0.3608_0.5334_0.5406.png
                gene_name: CYP2A13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
CYP2A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347720e-02	ci left: 5.684492e-01	ci right 5.879053e-01	k: 5782	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 1.445804e-02	ci left: 8.737768e-01	ci right 8.866008e-01	k: 8803	n:10000
CYP2A6   10000 perm   2 sec   (6627 perm/sec)   p_kst 8.803000e-01   p_cons 2.963000e-01   p_joint 5.782000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A6.4_1521_10000_0.8803_0.2963_0.5782.png
                gene_name: CYP2A6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 49 percent done.
CYP2A7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
KS ci ratio: 3.667305e-02	ci left: 5.233633e-01	ci right 5.430173e-01	k: 5332	n:10000
CYP2A7   10000 perm   1 sec   (7059 perm/sec)   p_kst 5.332000e-01   p_cons 8.600000e-02   p_joint 2.857000e-01

Joint ci ratio: 3.402994e-02	ci left: 3.920040e-01	ci right 4.056254e-01	k: 7976	n:20000
Cons ci ratio: 8.838073e-02	ci left: 8.557862e-02	ci right 9.354118e-02	k: 1790	n:20000
KS ci ratio: 2.654671e-02	ci left: 5.145992e-01	ci right 5.284945e-01	k: 10431	n:20000
CYP2A7   20000 perm   3 sec   (6269 perm/sec)   p_kst 5.215500e-01   p_cons 8.950000e-02   p_joint 3.988000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A7.3_1531_20000_0.52155_0.0895_0.3988.png
                gene_name: CYP2A7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
CYP2C18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
Cons ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
KS ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
CYP2C18   10000 perm   1 sec   (6825 perm/sec)   p_kst 4.104000e-01   p_cons 5.061000e-01   p_joint 5.279000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C18.4_1509_10000_0.4104_0.5061_0.5279.png
                gene_name: CYP2C18
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 52 percent done.
CYP2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
Cons ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
KS ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
CYP2E1   10000 perm   1 sec   (6813 perm/sec)   p_kst 4.081000e-01   p_cons 1.105000e-01   p_joint 2.705000e-01

Joint ci ratio: 6.366429e-02	ci left: 1.542530e-01	ci right 1.644462e-01	k: 3186	n:20000
Cons ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
KS ci ratio: 3.273117e-02	ci left: 4.107526e-01	ci right 4.244713e-01	k: 8352	n:20000
CYP2E1   20000 perm   3 sec   (6055 perm/sec)   p_kst 4.176000e-01   p_cons 1.088500e-01   p_joint 1.593000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2E1.4_1518_20000_0.4176_0.10885_0.1593.png
                gene_name: CYP2E1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 54 percent done.
CYP3A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
KS ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
CYP3A7   10000 perm   2 sec   (6596 perm/sec)   p_kst 2.440000e-01   p_cons 2.090000e-01   p_joint 2.523000e-01

Outputting figure to mutsig2_images.part000000000046/CYP3A7.4_1564_10000_0.244_0.209_0.2523.png
                gene_name: CYP3A7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 56 percent done.
CYP4A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
Cons ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
KS ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
CYP4A11   10000 perm   1 sec   (6787 perm/sec)   p_kst 8.893000e-01   p_cons 2.720000e-01   p_joint 4.893000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4A11.4_1608_10000_0.8893_0.272_0.4893.png
                gene_name: CYP4A11
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
CYSLTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
CYSLTR2   10000 perm   1 sec   (6976 perm/sec)   p_kst 7.892000e-01   p_cons 1.660000e-02   p_joint 9.490000e-02

Joint ci ratio: 9.529722e-02	ci left: 7.427104e-02	ci right 8.175220e-02	k: 1559	n:20000
Cons ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
KS ci ratio: 1.447202e-02	ci left: 7.800478e-01	ci right 7.914690e-01	k: 15716	n:20000
CYSLTR2   20000 perm   3 sec   (6225 perm/sec)   p_kst 7.858000e-01   p_cons 1.605000e-02   p_joint 7.795000e-02

Joint ci ratio: 7.468709e-02	ci left: 8.095037e-02	ci right 8.726378e-02	k: 2522	n:30000
Cons ci ratio: 1.784295e-01	ci left: 1.441927e-02	ci right 1.727561e-02	k: 474	n:30000
KS ci ratio: 1.196827e-02	ci left: 7.767466e-01	ci right 7.861322e-01	k: 23444	n:30000
CYSLTR2   30000 perm   5 sec   (5913 perm/sec)   p_kst 7.814667e-01   p_cons 1.580000e-02   p_joint 8.406667e-02

Joint ci ratio: 5.327858e-02	ci left: 1.160151e-01	ci right 1.223903e-01	k: 4767	n:40000
Cons ci ratio: 1.558218e-01	ci left: 1.436027e-02	ci right 1.681079e-02	k: 622	n:40000
KS ci ratio: 1.042598e-02	ci left: 7.753541e-01	ci right 7.835053e-01	k: 31178	n:40000
CYSLTR2   40000 perm   7 sec   (5714 perm/sec)   p_kst 7.794500e-01   p_cons 1.555000e-02   p_joint 1.191750e-01

Joint ci ratio: 5.198749e-02	ci left: 9.943945e-02	ci right 1.047668e-01	k: 5104	n:50000
Cons ci ratio: 1.411072e-01	ci left: 1.412651e-02	ci right 1.629031e-02	k: 759	n:50000
KS ci ratio: 9.296791e-03	ci left: 7.768458e-01	ci right 7.841216e-01	k: 39025	n:50000
CYSLTR2   50000 perm   9 sec   (5549 perm/sec)   p_kst 7.805000e-01   p_cons 1.518000e-02   p_joint 1.020800e-01

Joint ci ratio: 4.739763e-02	ci left: 9.990263e-02	ci right 1.047692e-01	k: 6139	n:60000
Cons ci ratio: 1.307180e-01	ci left: 1.380060e-02	ci right 1.574674e-02	k: 885	n:60000
KS ci ratio: 8.489656e-03	ci left: 7.770490e-01	ci right 7.836906e-01	k: 46823	n:60000
CYSLTR2   60000 perm   11 sec   (5401 perm/sec)   p_kst 7.803833e-01   p_cons 1.475000e-02   p_joint 1.023167e-01

Joint ci ratio: 5.131223e-02	ci left: 7.497905e-02	ci right 7.894182e-02	k: 5386	n:70000
Cons ci ratio: 1.207648e-01	ci left: 1.393235e-02	ci right 1.573677e-02	k: 1037	n:70000
KS ci ratio: 7.864422e-03	ci left: 7.770992e-01	ci right 7.832490e-01	k: 54613	n:70000
CYSLTR2   70000 perm   13 sec   (5280 perm/sec)   p_kst 7.801857e-01   p_cons 1.481429e-02   p_joint 7.694286e-02

Joint ci ratio: 4.385898e-02	ci left: 8.879284e-02	ci right 9.278689e-02	k: 7262	n:80000
Cons ci ratio: 1.125942e-01	ci left: 1.408400e-02	ci right 1.577645e-02	k: 1193	n:80000
KS ci ratio: 7.365300e-03	ci left: 7.768871e-01	ci right 7.826426e-01	k: 62382	n:80000
CYSLTR2   80000 perm   15 sec   (5182 perm/sec)   p_kst 7.797750e-01   p_cons 1.491250e-02   p_joint 9.077500e-02

Joint ci ratio: 4.250470e-02	ci left: 8.450624e-02	ci right 8.818714e-02	k: 7770	n:90000
Cons ci ratio: 1.062452e-01	ci left: 1.410777e-02	ci right 1.570150e-02	k: 1340	n:90000
KS ci ratio: 6.945137e-03	ci left: 7.770001e-01	ci right 7.824263e-01	k: 70175	n:90000
CYSLTR2   90000 perm   18 sec   (5087 perm/sec)   p_kst 7.797222e-01   p_cons 1.488889e-02   p_joint 8.633333e-02

Joint ci ratio: 4.097739e-02	ci left: 8.211943e-02	ci right 8.556475e-02	k: 8383	n:100000
Cons ci ratio: 1.005536e-01	ci left: 1.421671e-02	ci right 1.573162e-02	k: 1496	n:100000
KS ci ratio: 6.601051e-03	ci left: 7.764956e-01	ci right 7.816482e-01	k: 77908	n:100000
CYSLTR2   100000 perm   20 sec   (4999 perm/sec)   p_kst 7.790800e-01   p_cons 1.496000e-02   p_joint 8.383000e-02

Joint ci ratio: 3.982075e-02	ci left: 7.934915e-02	ci right 8.258207e-02	k: 8905	n:110000
Cons ci ratio: 9.539598e-02	ci left: 1.439647e-02	ci right 1.584744e-02	k: 1662	n:110000
KS ci ratio: 6.291494e-03	ci left: 7.767461e-01	ci right 7.816574e-01	k: 85713	n:110000
CYSLTR2   110000 perm   22 sec   (4907 perm/sec)   p_kst 7.792091e-01   p_cons 1.510909e-02   p_joint 8.095455e-02

Outputting figure to mutsig2_images.part000000000046/CYSLTR2.4_1045_110000_0.77921_0.015109_0.080955.png
                gene_name: CYSLTR2
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.083 

Current progress: 59 percent done.
CYTIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
Cons ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
KS ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
CYTIP   10000 perm   1 sec   (7451 perm/sec)   p_kst 3.890000e-01   p_cons 3.986000e-01   p_joint 4.667000e-01

Outputting figure to mutsig2_images.part000000000046/CYTIP.4_1112_10000_0.389_0.3986_0.4667.png
                gene_name: CYTIP
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
CYP17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.268811e-02	ci left: 2.722050e-01	ci right 2.899227e-01	k: 2810	n:10000
Cons ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
CYP17A1   10000 perm   1 sec   (7247 perm/sec)   p_kst 8.660000e-02   p_cons 9.615000e-01   p_joint 2.810000e-01

Joint ci ratio: 4.610918e-02	ci left: 2.592900e-01	ci right 2.715782e-01	k: 5308	n:20000
Cons ci ratio: 5.485691e-03	ci left: 9.596189e-01	ci right 9.649456e-01	k: 19247	n:20000
KS ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
CYP17A1   20000 perm   3 sec   (6442 perm/sec)   p_kst 8.860000e-02   p_cons 9.623500e-01   p_joint 2.654000e-01

Outputting figure to mutsig2_images.part000000000046/CYP17A1.3_1559_20000_0.0886_0.96235_0.2654.png
                gene_name: CYP17A1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 62 percent done.
CYP19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
Cons ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
KS ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
CYP19A1   10000 perm   1 sec   (6976 perm/sec)   p_kst 5.582000e-01   p_cons 4.513000e-01   p_joint 6.207000e-01

Outputting figure to mutsig2_images.part000000000046/CYP19A1.3_1548_10000_0.5582_0.4513_0.6207.png
                gene_name: CYP19A1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 63 percent done.
CYP27B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
Cons ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
KS ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
CYP27B1   10000 perm   1 sec   (6909 perm/sec)   p_kst 4.800000e-01   p_cons 1.940000e-02   p_joint 2.120000e-01

Joint ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
Cons ci ratio: 2.005164e-01	ci left: 1.686783e-02	ci right 2.067391e-02	k: 374	n:20000
KS ci ratio: 2.883370e-02	ci left: 4.733042e-01	ci right 4.872016e-01	k: 9605	n:20000
CYP27B1   20000 perm   3 sec   (6211 perm/sec)   p_kst 4.802500e-01   p_cons 1.870000e-02   p_joint 9.060000e-02

Joint ci ratio: 6.914437e-02	ci left: 9.341093e-02	ci right 1.001341e-01	k: 2902	n:30000
Cons ci ratio: 1.630588e-01	ci left: 1.735716e-02	ci right 2.047033e-02	k: 566	n:30000
KS ci ratio: 2.358178e-02	ci left: 4.737657e-01	ci right 4.851049e-01	k: 14383	n:30000
CYP27B1   30000 perm   5 sec   (5931 perm/sec)   p_kst 4.794333e-01   p_cons 1.886667e-02   p_joint 9.673333e-02

Joint ci ratio: 3.927341e-02	ci left: 1.954691e-01	ci right 2.033246e-01	k: 7975	n:40000
Cons ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
KS ci ratio: 2.040156e-02	ci left: 4.750431e-01	ci right 4.848598e-01	k: 19198	n:40000
CYP27B1   40000 perm   7 sec   (5734 perm/sec)   p_kst 4.799500e-01   p_cons 1.980000e-02   p_joint 1.993750e-01

Joint ci ratio: 4.022168e-02	ci left: 1.564195e-01	ci right 1.628600e-01	k: 7981	n:50000
Cons ci ratio: 1.241146e-01	ci left: 1.834473e-02	ci right 2.079150e-02	k: 977	n:50000
KS ci ratio: 1.821390e-02	ci left: 4.764918e-01	ci right 4.852704e-01	k: 24044	n:50000
CYP27B1   50000 perm   9 sec   (5579 perm/sec)   p_kst 4.808800e-01   p_cons 1.954000e-02   p_joint 1.596200e-01

Joint ci ratio: 3.919826e-02	ci left: 1.400591e-01	ci right 1.456755e-01	k: 8571	n:60000
Cons ci ratio: 1.140766e-01	ci left: 1.819794e-02	ci right 2.041557e-02	k: 1157	n:60000
KS ci ratio: 1.661637e-02	ci left: 4.771947e-01	ci right 4.852071e-01	k: 28872	n:60000
CYP27B1   60000 perm   11 sec   (5443 perm/sec)   p_kst 4.812000e-01   p_cons 1.928333e-02   p_joint 1.428500e-01

Joint ci ratio: 3.698076e-02	ci left: 1.357505e-01	ci right 1.408795e-01	k: 9681	n:70000
Cons ci ratio: 1.060556e-01	ci left: 1.812668e-02	ci right 2.017060e-02	k: 1339	n:70000
KS ci ratio: 1.539263e-02	ci left: 4.772067e-01	ci right 4.846234e-01	k: 33664	n:70000
CYP27B1   70000 perm   13 sec   (5329 perm/sec)   p_kst 4.809143e-01   p_cons 1.912857e-02   p_joint 1.383000e-01

Joint ci ratio: 3.097395e-02	ci left: 1.642226e-01	ci right 1.694016e-01	k: 13344	n:80000
Cons ci ratio: 9.965236e-02	ci left: 1.802859e-02	ci right 1.993152e-02	k: 1517	n:80000
KS ci ratio: 1.445277e-02	ci left: 4.755703e-01	ci right 4.825062e-01	k: 38323	n:80000
CYP27B1   80000 perm   15 sec   (5223 perm/sec)   p_kst 4.790375e-01   p_cons 1.896250e-02   p_joint 1.668000e-01

Outputting figure to mutsig2_images.part000000000046/CYP27B1.3_1563_80000_0.47904_0.018963_0.1668.png
                gene_name: CYP27B1
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 65 percent done.
CYP2C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
KS ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
CYP2C9   10000 perm   1 sec   (6999 perm/sec)   p_kst 7.556000e-01   p_cons 7.108000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2C9.3_1509_10000_0.7556_0.7108_1.png
                gene_name: CYP2C9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CYP4F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
Cons ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
KS ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
CYP4F11   10000 perm   1 sec   (7172 perm/sec)   p_kst 7.470000e-01   p_cons 1.110000e-02   p_joint 6.450000e-02

Joint ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
Cons ci ratio: 2.483822e-01	ci left: 1.077173e-02	ci right 1.387247e-02	k: 245	n:20000
KS ci ratio: 1.615041e-02	ci left: 7.404609e-01	ci right 7.525673e-01	k: 14931	n:20000
CYP4F11   20000 perm   3 sec   (6348 perm/sec)   p_kst 7.465500e-01   p_cons 1.225000e-02   p_joint 6.930000e-02

Joint ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
Cons ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
KS ci ratio: 1.320015e-02	ci left: 7.412016e-01	ci right 7.510840e-01	k: 22385	n:30000
CYP4F11   30000 perm   5 sec   (6056 perm/sec)   p_kst 7.461667e-01   p_cons 1.236667e-02   p_joint 4.793333e-02

Joint ci ratio: 9.885272e-02	ci left: 3.595217e-02	ci right 3.971530e-02	k: 1512	n:40000
Cons ci ratio: 1.776565e-01	ci left: 1.095598e-02	ci right 1.311572e-02	k: 480	n:40000
KS ci ratio: 1.138844e-02	ci left: 7.433127e-01	ci right 7.518513e-01	k: 29904	n:40000
CYP4F11   40000 perm   7 sec   (5846 perm/sec)   p_kst 7.476000e-01   p_cons 1.200000e-02   p_joint 3.780000e-02

Joint ci ratio: 7.652703e-02	ci left: 4.794874e-02	ci right 5.178374e-02	k: 2492	n:50000
Cons ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
KS ci ratio: 1.021367e-02	ci left: 7.427432e-01	ci right 7.503882e-01	k: 37329	n:50000
CYP4F11   50000 perm   9 sec   (5661 perm/sec)   p_kst 7.465800e-01   p_cons 1.186000e-02   p_joint 4.984000e-02

Joint ci ratio: 7.568096e-02	ci left: 4.117790e-02	ci right 4.443318e-02	k: 2567	n:60000
Cons ci ratio: 1.466594e-01	ci left: 1.090311e-02	ci right 1.264459e-02	k: 705	n:60000
KS ci ratio: 9.322861e-03	ci left: 7.431162e-01	ci right 7.500933e-01	k: 44797	n:60000
CYP4F11   60000 perm   11 sec   (5515 perm/sec)   p_kst 7.466167e-01   p_cons 1.175000e-02   p_joint 4.278333e-02

Joint ci ratio: 7.724346e-02	ci left: 3.411333e-02	ci right 3.686820e-02	k: 2483	n:70000
Cons ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
KS ci ratio: 8.633631e-03	ci left: 7.432745e-01	ci right 7.497337e-01	k: 52256	n:70000
CYP4F11   70000 perm   13 sec   (5378 perm/sec)   p_kst 7.465143e-01   p_cons 1.151429e-02   p_joint 3.547143e-02

Joint ci ratio: 7.366332e-02	ci left: 3.292672e-02	ci right 3.545721e-02	k: 2734	n:80000
Cons ci ratio: 1.280707e-01	ci left: 1.083320e-02	ci right 1.232754e-02	k: 925	n:80000
KS ci ratio: 8.097669e-03	ci left: 7.424665e-01	ci right 7.485157e-01	k: 59640	n:80000
CYP4F11   80000 perm   15 sec   (5246 perm/sec)   p_kst 7.455000e-01   p_cons 1.156250e-02   p_joint 3.417500e-02

Joint ci ratio: 6.072250e-02	ci left: 4.291012e-02	ci right 4.560824e-02	k: 3982	n:90000
Cons ci ratio: 1.148024e-01	ci left: 1.205418e-02	ci right 1.353302e-02	k: 1150	n:90000
KS ci ratio: 7.643500e-03	ci left: 7.421948e-01	ci right 7.479005e-01	k: 67055	n:90000
CYP4F11   90000 perm   18 sec   (5042 perm/sec)   p_kst 7.450556e-01   p_cons 1.277778e-02   p_joint 4.424444e-02

Joint ci ratio: 5.686793e-02	ci left: 4.406859e-02	ci right 4.665786e-02	k: 4535	n:100000
Cons ci ratio: 1.095590e-01	ci left: 1.194703e-02	ci right 1.334145e-02	k: 1263	n:100000
KS ci ratio: 7.254040e-03	ci left: 7.421962e-01	ci right 7.476096e-01	k: 74491	n:100000
CYP4F11   100000 perm   20 sec   (4885 perm/sec)   p_kst 7.449100e-01   p_cons 1.263000e-02   p_joint 4.535000e-02

Joint ci ratio: 5.695136e-02	ci left: 4.011373e-02	ci right 4.247417e-02	k: 4541	n:110000
Cons ci ratio: 1.044757e-01	ci left: 1.197575e-02	ci right 1.330468e-02	k: 1389	n:110000
KS ci ratio: 6.906382e-03	ci left: 7.428785e-01	ci right 7.480359e-01	k: 82001	n:110000
CYP4F11   110000 perm   23 sec   (4735 perm/sec)   p_kst 7.454636e-01   p_cons 1.262727e-02   p_joint 4.128182e-02

Joint ci ratio: 5.616618e-02	ci left: 3.791164e-02	ci right 4.011071e-02	k: 4680	n:120000
Cons ci ratio: 1.004773e-01	ci left: 1.189528e-02	ci right 1.316178e-02	k: 1502	n:120000
KS ci ratio: 6.632489e-03	ci left: 7.418300e-01	ci right 7.467748e-01	k: 89317	n:120000
CYP4F11   120000 perm   26 sec   (4607 perm/sec)   p_kst 7.443083e-01   p_cons 1.251667e-02   p_joint 3.900000e-02

Joint ci ratio: 5.344977e-02	ci left: 3.866782e-02	ci right 4.079893e-02	k: 5164	n:130000
Cons ci ratio: 9.624409e-02	ci left: 1.199321e-02	ci right 1.321329e-02	k: 1637	n:130000
KS ci ratio: 6.373459e-03	ci left: 7.418575e-01	ci right 7.466085e-01	k: 96751	n:130000
CYP4F11   130000 perm   29 sec   (4487 perm/sec)   p_kst 7.442385e-01   p_cons 1.259231e-02   p_joint 3.972308e-02

Outputting figure to mutsig2_images.part000000000046/CYP4F11.3_1623_130000_0.74424_0.012592_0.039723.png
                gene_name: CYP4F11
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 68 percent done.
CYP4Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
Cons ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
KS ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
CYP4Z1   10000 perm   2 sec   (6326 perm/sec)   p_kst 8.343000e-01   p_cons 8.060000e-02   p_joint 2.063000e-01

Joint ci ratio: 4.500607e-02	ci left: 2.687702e-01	ci right 2.811953e-01	k: 5499	n:20000
Cons ci ratio: 9.755352e-02	ci left: 7.104451e-02	ci right 7.837971e-02	k: 1493	n:20000
KS ci ratio: 1.219461e-02	ci left: 8.326677e-01	ci right 8.429339e-01	k: 16757	n:20000
CYP4Z1   20000 perm   4 sec   (5569 perm/sec)   p_kst 8.378500e-01   p_cons 7.465000e-02   p_joint 2.749500e-01

Outputting figure to mutsig2_images.part000000000046/CYP4Z1.3_1566_20000_0.83785_0.07465_0.27495.png
                gene_name: CYP4Z1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 70 percent done.
CYP51A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
Cons ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
CYP51A1   10000 perm   2 sec   (6035 perm/sec)   p_kst 7.430000e-02   p_cons 8.982000e-01   p_joint 1.634000e-01

Joint ci ratio: 5.802403e-02	ci left: 1.803811e-01	ci right 1.912104e-01	k: 3715	n:20000
Cons ci ratio: 9.243454e-03	ci left: 8.957080e-01	ci right 9.040753e-01	k: 17999	n:20000
KS ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
CYP51A1   20000 perm   4 sec   (5411 perm/sec)   p_kst 7.050000e-02   p_cons 8.999500e-01   p_joint 1.857500e-01

Joint ci ratio: 6.909169e-02	ci left: 9.354219e-02	ci right 1.002694e-01	k: 2906	n:30000
Cons ci ratio: 7.507014e-03	ci left: 8.974633e-01	ci right 9.042589e-01	k: 27027	n:30000
KS ci ratio: 8.196855e-02	ci left: 6.792259e-02	ci right 7.376085e-02	k: 2124	n:30000
CYP51A1   30000 perm   6 sec   (5138 perm/sec)   p_kst 7.080000e-02   p_cons 9.009000e-01   p_joint 9.686667e-02

Outputting figure to mutsig2_images.part000000000046/CYP51A1.3_1570_30000_0.0708_0.9009_0.096867.png
                gene_name: CYP51A1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 71 percent done.
CYTH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
CYTH2   10000 perm   1 sec   (7391 perm/sec)   p_kst 5.605000e-01   p_cons 8.700000e-02   p_joint 2.439000e-01

Joint ci ratio: 4.583294e-02	ci left: 2.616225e-01	ci right 2.739451e-01	k: 5355	n:20000
Cons ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
KS ci ratio: 2.390464e-02	ci left: 5.665604e-01	ci right 5.803182e-01	k: 11469	n:20000
CYTH2   20000 perm   3 sec   (6496 perm/sec)   p_kst 5.734500e-01   p_cons 9.190000e-02   p_joint 2.677500e-01

Outputting figure to mutsig2_images.part000000000046/CYTH2.3_1251_20000_0.57345_0.0919_0.26775.png
                gene_name: CYTH2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 73 percent done.
CYB5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
CYB5B   10000 perm   1 sec   (8151 perm/sec)   p_kst 7.775000e-01   p_cons 7.530000e-02   p_joint 7.480000e-01

Joint ci ratio: 8.022195e-02	ci left: 1.023554e-01	ci right 1.109593e-01	k: 2132	n:20000
Cons ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
KS ci ratio: 1.458371e-02	ci left: 7.774232e-01	ci right 7.888943e-01	k: 15664	n:20000
CYB5B   20000 perm   3 sec   (7158 perm/sec)   p_kst 7.832000e-01   p_cons 7.340000e-02   p_joint 1.066000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5B.2_473_20000_0.7832_0.0734_0.1066.png
                gene_name: CYB5B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 75 percent done.
CYB5R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
CYB5R2   10000 perm   1 sec   (7840 perm/sec)   p_kst 1.786000e-01   p_cons 6.250000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYB5R2.2_863_10000_0.1786_0.625_1.png
                gene_name: CYB5R2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CYC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
Cons ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
KS ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
CYC1   10000 perm   1 sec   (8071 perm/sec)   p_kst 4.281000e-01   p_cons 2.638000e-01   p_joint 1.907000e-01

Outputting figure to mutsig2_images.part000000000046/CYC1.2_1006_10000_0.4281_0.2638_0.1907.png
                gene_name: CYC1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 78 percent done.
CYP1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
CYP1A2   10000 perm   1 sec   (7339 perm/sec)   p_kst 4.895000e-01   p_cons 3.471000e-01   p_joint 3.509000e-01

Outputting figure to mutsig2_images.part000000000046/CYP1A2.2_1575_10000_0.4895_0.3471_0.3509.png
                gene_name: CYP1A2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 79 percent done.
CYP1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
CYP1B1   10000 perm   1 sec   (7562 perm/sec)   p_kst 6.090000e-01   p_cons 8.320000e-02   p_joint 1.582000e-01

Joint ci ratio: 7.947324e-02	ci left: 1.041236e-01	ci right 1.127906e-01	k: 2168	n:20000
Cons ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
KS ci ratio: 2.224394e-02	ci left: 6.014445e-01	ci right 6.150240e-01	k: 12165	n:20000
CYP1B1   20000 perm   3 sec   (6666 perm/sec)   p_kst 6.082500e-01   p_cons 8.440000e-02   p_joint 1.084000e-01

Outputting figure to mutsig2_images.part000000000046/CYP1B1.2_1640_20000_0.60825_0.0844_0.1084.png
                gene_name: CYP1B1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 81 percent done.
CYP27C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
CYP27C1   10000 perm   1 sec   (7697 perm/sec)   p_kst 7.352000e-01   p_cons 7.202000e-01   p_joint 7.281000e-01

Outputting figure to mutsig2_images.part000000000046/CYP27C1.2_1147_10000_0.7352_0.7202_0.7281.png
                gene_name: CYP27C1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 83 percent done.
CYP2C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
Cons ci ratio: 1.123144e-02	ci left: 9.188379e-01	ci right 9.293135e-01	k: 9242	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
CYP2C8   10000 perm   1 sec   (7452 perm/sec)   p_kst 1.593000e-01   p_cons 9.242000e-01   p_joint 6.178000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C8.2_1509_10000_0.1593_0.9242_0.6178.png
                gene_name: CYP2C8
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 84 percent done.
CYP2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
Cons ci ratio: 7.580070e-02	ci left: 2.029395e-01	ci right 2.190293e-01	k: 2109	n:10000
KS ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
CYP2F1   10000 perm   1 sec   (7459 perm/sec)   p_kst 4.826000e-01   p_cons 2.109000e-01   p_joint 2.899000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2F1.2_1512_10000_0.4826_0.2109_0.2899.png
                gene_name: CYP2F1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 86 percent done.
CYP2U1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
Cons ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
CYP2U1   10000 perm   1 sec   (7381 perm/sec)   p_kst 5.160000e-02   p_cons 1.641000e-01   p_joint 1.233000e-01

Joint ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
Cons ci ratio: 6.198343e-02	ci left: 1.614596e-01	ci right 1.718375e-01	k: 3332	n:20000
KS ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
CYP2U1   20000 perm   3 sec   (6522 perm/sec)   p_kst 5.165000e-02   p_cons 1.666000e-01   p_joint 6.225000e-02

Joint ci ratio: 7.087383e-02	ci left: 8.924436e-02	ci right 9.583480e-02	k: 2775	n:30000
Cons ci ratio: 5.059433e-02	ci left: 1.624982e-01	ci right 1.709664e-01	k: 5001	n:30000
KS ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
CYP2U1   30000 perm   5 sec   (6191 perm/sec)   p_kst 5.276667e-02   p_cons 1.667000e-01   p_joint 9.250000e-02

Outputting figure to mutsig2_images.part000000000046/CYP2U1.2_1655_30000_0.052767_0.1667_0.0925.png
                gene_name: CYP2U1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 87 percent done.
CYP2W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
Cons ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
KS ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
CYP2W1   10000 perm   1 sec   (7492 perm/sec)   p_kst 3.817000e-01   p_cons 6.059000e-01   p_joint 5.658000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2W1.2_1509_10000_0.3817_0.6059_0.5658.png
                gene_name: CYP2W1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 89 percent done.
CYP39A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.776107e-02	ci left: 8.221868e-01	ci right 8.370206e-01	k: 8297	n:10000
Cons ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
KS ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
CYP39A1   10000 perm   1 sec   (7460 perm/sec)   p_kst 3.784000e-01   p_cons 3.867000e-01   p_joint 8.297000e-01

Outputting figure to mutsig2_images.part000000000046/CYP39A1.2_1458_10000_0.3784_0.3867_0.8297.png
                gene_name: CYP39A1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
CYP4F22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
Cons ci ratio: 1.017051e-02	ci left: 9.320594e-01	ci right 9.416842e-01	k: 9370	n:10000
KS ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
CYP4F22   10000 perm   1 sec   (7356 perm/sec)   p_kst 1.833000e-01   p_cons 9.370000e-01   p_joint 4.870000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F22.2_1644_10000_0.1833_0.937_0.487.png
                gene_name: CYP4F22
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 92 percent done.
CYP4X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
Cons ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
KS ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
CYP4X1   10000 perm   1 sec   (7377 perm/sec)   p_kst 8.748000e-01   p_cons 6.875000e-01   p_joint 7.455000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4X1.2_1578_10000_0.8748_0.6875_0.7455.png
                gene_name: CYP4X1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 94 percent done.
CYP8B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
KS ci ratio: 5.034940e-02	ci left: 3.677867e-01	ci right 3.868848e-01	k: 3773	n:10000
CYP8B1   10000 perm   1 sec   (7438 perm/sec)   p_kst 3.773000e-01   p_cons 4.150000e-02   p_joint 2.053000e-01

Joint ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
Cons ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
KS ci ratio: 3.559464e-02	ci left: 3.707251e-01	ci right 3.842106e-01	k: 7549	n:20000
CYP8B1   20000 perm   3 sec   (6600 perm/sec)   p_kst 3.774500e-01   p_cons 4.390000e-02   p_joint 8.135000e-02

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 1.072904e-01	ci left: 4.030997e-02	ci right 4.491247e-02	k: 1277	n:30000
KS ci ratio: 2.924300e-02	ci left: 3.690854e-01	ci right 3.800723e-01	k: 11237	n:30000
CYP8B1   30000 perm   5 sec   (6272 perm/sec)   p_kst 3.745667e-01   p_cons 4.256667e-02   p_joint 7.740000e-02

Joint ci ratio: 6.255280e-02	ci left: 8.659664e-02	ci right 9.221313e-02	k: 3575	n:40000
Cons ci ratio: 9.395801e-02	ci left: 3.973739e-02	ci right 4.367950e-02	k: 1667	n:40000
KS ci ratio: 2.542409e-02	ci left: 3.680083e-01	ci right 3.775102e-01	k: 14910	n:40000
CYP8B1   40000 perm   7 sec   (6046 perm/sec)   p_kst 3.727500e-01   p_cons 4.167500e-02   p_joint 8.937500e-02

Outputting figure to mutsig2_images.part000000000046/CYP8B1.2_1510_40000_0.37275_0.041675_0.089375.png
                gene_name: CYP8B1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 95 percent done.
CYTH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
KS ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
CYTH3   10000 perm   1 sec   (7626 perm/sec)   p_kst 8.656000e-01   p_cons 2.510000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYTH3.2_1252_10000_0.8656_0.251_1.png
                gene_name: CYTH3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
CYTH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
KS ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
CYTH4   10000 perm   1 sec   (7699 perm/sec)   p_kst 7.575000e-01   p_cons 6.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYTH4.2_1237_10000_0.7575_0.6386_1.png
                gene_name: CYTH4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CYTSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
CYTSA   10000 perm   1 sec   (6776 perm/sec)   p_kst 5.518000e-01   p_cons 1.909000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000046/CYTSA.2_3414_10000_0.5518_0.1909_0.971.png
                gene_name: CYTSA
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000046
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 46 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1530>
Subject: Job 4421865: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1530>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000047> was used as the working directory.
Started at Wed Oct 24 17:38:02 2012
Results reported at Wed Oct 24 18:41:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000047.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000047.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 47  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000047.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4201.89 sec.
    Max Memory :      5330 MB
    Max Swap   :      7881 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
47
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 47
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 47: processing genes 4163 - 4252
Calculating significance of each gene.
Using projection method.
4163	CYYR1	2.048629e-01
4164	CYorf15A	1
4165	CYorf15B	1
4166	D2HGDH	3.951239e-01
4167	D4S234E	1
4168	DAAM1	9.306050e-01
4169	DAAM2	1
4170	DAB1	7.141843e-01
4171	DAB2	1
4172	DAB2IP	9.953535e-01
4173	DACH1	4.773278e-04
4174	DACH2	2.226332e-03
4175	DACT1	8.173779e-01
4176	DAD1	4.966613e-01
4177	DAG1	9.764054e-01
4178	DAGLA	1
4179	DAGLB	9.797720e-01
4180	DAK	1
4181	DALRD3	8.819201e-01
4182	DAND5	5.323687e-01
4183	DAO	1
4184	DAOA	4.196790e-01
4185	DAP	1
4186	DAP3	4.344088e-01
4187	DAPK1	9.685523e-01
4188	DAPK2	3.789305e-01
4189	DAPK3	8.666059e-01
4190	DAPL1	1
4191	DAPP1	2.362551e-01
4192	DARC	1.097496e-02
4193	DARS	1
4194	DARS2	7.280636e-01
4195	DAXX	2.819388e-01
4196	DAZAP1	1
4197	DAZAP2	6.810812e-01
4198	DAZL	3.195549e-01
4199	DBC1	9.728192e-01
4200	DBF4	1
4201	DBF4B	1
4202	DBH	8.728886e-01
4203	DBI	1
4204	DBN1	9.386348e-01
4205	DBNDD1	1
4206	DBNDD2	1
4207	DBNL	5.372535e-01
4208	DBP	1
4209	DBR1	6.354490e-01
4210	DBT	1.172609e-01
4211	DBX1	2.373008e-01
4212	DBX2	1.941505e-03
4213	DCAF10	9.386805e-01
4214	DCAF11	9.227220e-01
4215	DCAF12	4.297725e-01
4216	DCAF12L1	7.926516e-01
4217	DCAF12L2	9.274488e-03
4218	DCAF13	7.265101e-01
4219	DCAF15	1
4220	DCAF16	6.791036e-01
4221	DCAF17	1
4222	DCAF4	8.813537e-01
4223	DCAF4L1	4.064398e-02
4224	DCAF4L2	4.905610e-02
4225	DCAF5	1
4226	DCAF6	1
4227	DCAF7	2.340695e-01
4228	DCAF8	1.683575e-01
4229	DCAF8L1	8.159476e-01
4230	DCAF8L2	1.836416e-01
4231	DCAKD	1
4232	DCBLD1	1
4233	DCBLD2	6.447449e-01
4234	DCC	1.706107e-01
4235	DCD	6.905879e-02
4236	DCDC1	2.405145e-03
4237	DCDC2	2.542842e-01
4238	DCDC2B	6.905874e-01
4239	DCHS1	9.999933e-01
4240	DCHS2	5.279181e-01
4241	DCI	2.926297e-01
4242	DCK	4.427940e-01
4243	DCLK1	2.406506e-02
4244	DCLK2	8.649409e-01
4245	DCLK3	6.445130e-04
4246	DCLRE1A	2.602345e-01
4247	DCLRE1B	8.749415e-01
4248	DCLRE1C	9.633003e-01
4249	DCN	1
4250	DCP1A	8.748750e-01
4251	DCP1B	8.129554e-01
4252	DCP2	1
Done

Running MutSig 2:
Scatter job 47: processing genes 4163 - 4252
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DCHS2
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
Cons ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
DCHS2   10000 perm   5 sec   (2059 perm/sec)   p_kst 4.390000e-02   p_cons 5.793000e-01   p_joint 1.107000e-01

Joint ci ratio: 8.199738e-02	ci left: 9.832948e-02	ci right 1.067865e-01	k: 2050	n:20000
Cons ci ratio: 2.395109e-02	ci left: 5.656086e-01	ci right 5.793703e-01	k: 11450	n:20000
KS ci ratio: 1.287420e-01	ci left: 4.144132e-02	ci right 4.719210e-02	k: 885	n:20000
DCHS2   20000 perm   13 sec   (1533 perm/sec)   p_kst 4.425000e-02   p_cons 5.725000e-01   p_joint 1.025000e-01

Joint ci ratio: 8.070842e-02	ci left: 6.995027e-02	ci right 7.586609e-02	k: 2186	n:30000
Cons ci ratio: 1.918072e-02	ci left: 5.763609e-01	ci right 5.875566e-01	k: 17459	n:30000
KS ci ratio: 1.073782e-01	ci left: 4.024502e-02	ci right 4.484410e-02	k: 1275	n:30000
DCHS2   30000 perm   18 sec   (1651 perm/sec)   p_kst 4.250000e-02   p_cons 5.819667e-01   p_joint 7.286667e-02

Joint ci ratio: 6.478633e-02	ci left: 8.112700e-02	ci right 8.658359e-02	k: 3353	n:40000
Cons ci ratio: 1.669722e-02	ci left: 5.745942e-01	ci right 5.842942e-01	k: 23178	n:40000
KS ci ratio: 9.235189e-02	ci left: 4.110612e-02	ci right 4.511056e-02	k: 1723	n:40000
DCHS2   40000 perm   23 sec   (1709 perm/sec)   p_kst 4.307500e-02   p_cons 5.794500e-01   p_joint 8.382500e-02

Outputting figure to mutsig2_images.part000000000047/DCHS2.33_11085_40000_0.043075_0.57945_0.083825.png
                gene_name: DCHS2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 2 percent done.
DCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
Cons ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
KS ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
DCC   10000 perm   3 sec   (3414 perm/sec)   p_kst 1.992000e-01   p_cons 9.854000e-01   p_joint 3.022000e-01

Outputting figure to mutsig2_images.part000000000047/DCC.22_4460_10000_0.1992_0.9854_0.3022.png
                gene_name: DCC
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 3 percent done.
DCAF12L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
Cons ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
KS ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
DCAF12L2   10000 perm   2 sec   (4401 perm/sec)   p_kst 7.785000e-01   p_cons 5.220000e-02   p_joint 3.464000e-01

Joint ci ratio: 5.525524e-02	ci left: 1.954648e-01	ci right 2.066223e-01	k: 4020	n:20000
Cons ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
KS ci ratio: 1.455795e-02	ci left: 7.780289e-01	ci right 7.894885e-01	k: 15676	n:20000
DCAF12L2   20000 perm   5 sec   (3986 perm/sec)   p_kst 7.838000e-01   p_cons 5.745000e-02   p_joint 2.010000e-01

Joint ci ratio: 4.450030e-02	ci left: 2.009066e-01	ci right 2.100838e-01	k: 6164	n:30000
Cons ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
KS ci ratio: 1.192972e-02	ci left: 7.778550e-01	ci right 7.872236e-01	k: 23477	n:30000
DCAF12L2   30000 perm   8 sec   (3832 perm/sec)   p_kst 7.825667e-01   p_cons 5.730000e-02   p_joint 2.054667e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12L2.21_1396_30000_0.78257_0.0573_0.20547.png
                gene_name: DCAF12L2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 5 percent done.
DCAF4L2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
DCAF4L2   10000 perm   2 sec   (4389 perm/sec)   p_kst 1.991000e-01   p_cons 6.821000e-01   p_joint 2.877000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L2.17_1192_10000_0.1991_0.6821_0.2877.png
                gene_name: DCAF4L2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 6 percent done.
DAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
Cons ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
KS ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
DAB1   10000 perm   2 sec   (4381 perm/sec)   p_kst 7.310000e-01   p_cons 2.806000e-01   p_joint 6.014000e-01

Outputting figure to mutsig2_images.part000000000047/DAB1.15_1720_10000_0.731_0.2806_0.6014.png
                gene_name: DAB1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 8 percent done.
DACH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
DACH1   10000 perm   2 sec   (4770 perm/sec)   p_kst 5.190000e-02   p_cons 5.000000e-04   p_joint 9.100000e-03

Joint ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
Cons ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
KS ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
DACH1   20000 perm   5 sec   (4327 perm/sec)   p_kst 5.140000e-02   p_cons 6.500000e-04   p_joint 2.050000e-03

Joint ci ratio: 5.379686e-01	ci left: 1.294799e-03	ci right 2.272423e-03	k: 52	n:30000
Cons ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
KS ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
DACH1   30000 perm   7 sec   (4151 perm/sec)   p_kst 5.276667e-02   p_cons 7.000000e-04   p_joint 1.733333e-03

Joint ci ratio: 5.188401e-01	ci left: 1.057713e-03	ci right 1.817636e-03	k: 56	n:40000
Cons ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
KS ci ratio: 8.309783e-02	ci left: 5.050591e-02	ci right 5.490931e-02	k: 2107	n:40000
DACH1   40000 perm   10 sec   (4036 perm/sec)   p_kst 5.267500e-02   p_cons 6.500000e-04   p_joint 1.400000e-03

Joint ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
Cons ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
KS ci ratio: 7.609432e-02	ci left: 4.847895e-02	ci right 5.233346e-02	k: 2519	n:50000
DACH1   50000 perm   13 sec   (3917 perm/sec)   p_kst 5.038000e-02   p_cons 6.400000e-04   p_joint 4.960000e-03

Joint ci ratio: 2.276676e-01	ci left: 4.356993e-03	ci right 5.491709e-03	k: 294	n:60000
Cons ci ratio: 6.442399e-01	ci left: 4.202669e-04	ci right 8.305571e-04	k: 36	n:60000
KS ci ratio: 6.962214e-02	ci left: 4.843348e-02	ci right 5.194352e-02	k: 3010	n:60000
DACH1   60000 perm   16 sec   (3810 perm/sec)   p_kst 5.016667e-02   p_cons 6.000000e-04   p_joint 4.900000e-03

Joint ci ratio: 1.701127e-01	ci left: 6.887881e-03	ci right 8.182015e-03	k: 526	n:70000
Cons ci ratio: 5.841671e-01	ci left: 4.567570e-04	ci right 8.437370e-04	k: 44	n:70000
KS ci ratio: 6.444638e-02	ci left: 4.857988e-02	ci right 5.182897e-02	k: 3513	n:70000
DACH1   70000 perm   19 sec   (3751 perm/sec)   p_kst 5.018571e-02   p_cons 6.285714e-04   p_joint 7.514286e-03

Joint ci ratio: 1.861503e-01	ci left: 4.999258e-03	ci right 6.037097e-03	k: 440	n:80000
Cons ci ratio: 5.656300e-01	ci left: 4.317038e-04	ci right 7.811748e-04	k: 47	n:80000
KS ci ratio: 6.210470e-02	ci left: 4.596234e-02	ci right 4.892059e-02	k: 3794	n:80000
DACH1   80000 perm   22 sec   (3693 perm/sec)   p_kst 4.742500e-02   p_cons 5.875000e-04   p_joint 5.500000e-03

Joint ci ratio: 2.211847e-01	ci left: 3.093193e-03	ci right 3.872684e-03	k: 312	n:90000
Cons ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
KS ci ratio: 5.831225e-02	ci left: 4.641522e-02	ci right 4.921401e-02	k: 4302	n:90000
DACH1   90000 perm   25 sec   (3640 perm/sec)   p_kst 4.780000e-02   p_cons 6.111111e-04   p_joint 3.466667e-03

Joint ci ratio: 2.144556e-01	ci left: 2.972944e-03	ci right 3.696338e-03	k: 332	n:100000
Cons ci ratio: 4.976837e-01	ci left: 4.666328e-04	ci right 7.835025e-04	k: 61	n:100000
KS ci ratio: 5.522963e-02	ci left: 4.663387e-02	ci right 4.929243e-02	k: 4795	n:100000
DACH1   100000 perm   28 sec   (3585 perm/sec)   p_kst 4.795000e-02   p_cons 6.100000e-04   p_joint 3.320000e-03

Joint ci ratio: 2.068401e-01	ci left: 2.917953e-03	ci right 3.599562e-03	k: 357	n:110000
Cons ci ratio: 4.650661e-01	ci left: 4.961092e-04	ci right 8.039398e-04	k: 70	n:110000
KS ci ratio: 5.278881e-02	ci left: 4.647482e-02	ci right 4.900364e-02	k: 5250	n:110000
DACH1   110000 perm   31 sec   (3531 perm/sec)   p_kst 4.772727e-02   p_cons 6.363636e-04   p_joint 3.245455e-03

Joint ci ratio: 1.820227e-01	ci left: 3.499526e-03	ci right 4.208117e-03	k: 461	n:120000
Cons ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
KS ci ratio: 5.056168e-02	ci left: 4.649266e-02	ci right 4.891259e-02	k: 5723	n:120000
DACH1   120000 perm   35 sec   (3475 perm/sec)   p_kst 4.769167e-02   p_cons 7.333333e-04   p_joint 3.841667e-03

Joint ci ratio: 1.787784e-01	ci left: 3.355173e-03	ci right 4.021114e-03	k: 478	n:130000
Cons ci ratio: 3.958290e-01	ci left: 6.051209e-04	ci right 9.101697e-04	k: 97	n:130000
KS ci ratio: 4.859869e-02	ci left: 4.650206e-02	ci right 4.882586e-02	k: 6195	n:130000
DACH1   130000 perm   38 sec   (3428 perm/sec)   p_kst 4.765385e-02   p_cons 7.461538e-04   p_joint 3.676923e-03

Joint ci ratio: 1.928395e-01	ci left: 2.659079e-03	ci right 3.233242e-03	k: 411	n:140000
Cons ci ratio: 3.861056e-01	ci left: 5.941008e-04	ci right 8.843671e-04	k: 102	n:140000
KS ci ratio: 4.691812e-02	ci left: 4.637748e-02	ci right 4.861274e-02	k: 6648	n:140000
DACH1   140000 perm   41 sec   (3381 perm/sec)   p_kst 4.748571e-02   p_cons 7.285714e-04   p_joint 2.935714e-03

Joint ci ratio: 1.677630e-01	ci left: 3.322369e-03	ci right 3.937064e-03	k: 543	n:150000
Cons ci ratio: 3.770651e-01	ci left: 5.846296e-04	ci right 8.619262e-04	k: 107	n:150000
KS ci ratio: 4.547461e-02	ci left: 4.612565e-02	ci right 4.827856e-02	k: 7079	n:150000
DACH1   150000 perm   45 sec   (3334 perm/sec)   p_kst 4.719333e-02   p_cons 7.133333e-04   p_joint 3.620000e-03

Joint ci ratio: 1.631808e-01	ci left: 3.300445e-03	ci right 3.892768e-03	k: 574	n:160000
Cons ci ratio: 3.686312e-01	ci left: 5.764117e-04	ci right 8.422220e-04	k: 112	n:160000
KS ci ratio: 4.389960e-02	ci left: 4.642573e-02	ci right 4.851570e-02	k: 7594	n:160000
DACH1   160000 perm   49 sec   (3287 perm/sec)   p_kst 4.746250e-02   p_cons 7.000000e-04   p_joint 3.587500e-03

Joint ci ratio: 1.592185e-01	ci left: 3.270004e-03	ci right 3.841251e-03	k: 603	n:170000
Cons ci ratio: 3.577180e-01	ci left: 5.799251e-04	ci right 8.375967e-04	k: 119	n:170000
KS ci ratio: 4.252719e-02	ci left: 4.658683e-02	ci right 4.861687e-02	k: 8091	n:170000
DACH1   170000 perm   52 sec   (3244 perm/sec)   p_kst 4.759412e-02   p_cons 7.000000e-04   p_joint 3.547059e-03

Joint ci ratio: 1.433198e-01	ci left: 3.842176e-03	ci right 4.440634e-03	k: 744	n:180000
Cons ci ratio: 3.463581e-01	ci left: 5.882228e-04	ci right 8.394210e-04	k: 127	n:180000
KS ci ratio: 4.128854e-02	ci left: 4.670341e-02	ci right 4.867785e-02	k: 8583	n:180000
DACH1   180000 perm   56 sec   (3203 perm/sec)   p_kst 4.768333e-02   p_cons 7.055556e-04   p_joint 4.133333e-03

Joint ci ratio: 1.802079e-01	ci left: 2.260340e-03	ci right 2.712947e-03	k: 471	n:190000
Cons ci ratio: 3.360160e-01	ci left: 5.957626e-04	ci right 8.409390e-04	k: 135	n:190000
KS ci ratio: 3.875955e-02	ci left: 5.009323e-02	ci right 5.207839e-02	k: 9705	n:190000
DACH1   190000 perm   60 sec   (3161 perm/sec)   p_kst 5.107895e-02   p_cons 7.105263e-04   p_joint 2.478947e-03

Joint ci ratio: 1.777816e-01	ci left: 2.209406e-03	ci right 2.645216e-03	k: 484	n:200000
Cons ci ratio: 3.347926e-01	ci left: 5.705521e-04	ci right 8.043139e-04	k: 136	n:200000
KS ci ratio: 3.787756e-02	ci left: 4.986642e-02	ci right 5.179663e-02	k: 10165	n:200000
DACH1   200000 perm   64 sec   (3118 perm/sec)   p_kst 5.082500e-02   p_cons 6.800000e-04   p_joint 2.420000e-03

Joint ci ratio: 2.105663e-01	ci left: 1.474176e-03	ci right 1.825524e-03	k: 345	n:210000
Cons ci ratio: 3.623023e-01	ci left: 4.564639e-04	ci right 6.624918e-04	k: 116	n:210000
KS ci ratio: 3.686531e-02	ci left: 5.014786e-02	ci right 5.203599e-02	k: 10728	n:210000
DACH1   210000 perm   68 sec   (3076 perm/sec)   p_kst 5.108571e-02   p_cons 5.523810e-04   p_joint 1.642857e-03

Joint ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
Cons ci ratio: 3.562648e-01	ci left: 4.522561e-04	ci right 6.521951e-04	k: 120	n:220000
KS ci ratio: 3.605138e-02	ci left: 5.007985e-02	ci right 5.192292e-02	k: 11219	n:220000
DACH1   220000 perm   72 sec   (3036 perm/sec)   p_kst 5.099545e-02   p_cons 5.454545e-04   p_joint 1.650000e-03

Joint ci ratio: 2.635604e-01	ci left: 8.343425e-04	ci right 1.091545e-03	k: 220	n:230000
Cons ci ratio: 3.519307e-01	ci left: 4.444757e-04	ci right 6.380384e-04	k: 123	n:230000
KS ci ratio: 3.528590e-02	ci left: 5.002679e-02	ci right 5.182802e-02	k: 11712	n:230000
DACH1   230000 perm   77 sec   (2998 perm/sec)   p_kst 5.092174e-02   p_cons 5.347826e-04   p_joint 9.565217e-04

Joint ci ratio: 2.594845e-01	ci left: 8.268326e-04	ci right 1.077139e-03	k: 227	n:240000
Cons ci ratio: 3.505234e-01	ci left: 4.297544e-04	ci right 6.159874e-04	k: 124	n:240000
KS ci ratio: 3.454781e-02	ci left: 5.003227e-02	ci right 5.179526e-02	k: 12218	n:240000
DACH1   240000 perm   81 sec   (2959 perm/sec)   p_kst 5.090833e-02   p_cons 5.166667e-04   p_joint 9.458333e-04

Joint ci ratio: 2.566875e-01	ci left: 8.124648e-04	ci right 1.055345e-03	k: 232	n:250000
Cons ci ratio: 3.477547e-01	ci left: 4.198623e-04	ci right 6.000474e-04	k: 126	n:250000
KS ci ratio: 3.391179e-02	ci left: 4.987498e-02	ci right 5.159945e-02	k: 12683	n:250000
DACH1   250000 perm   86 sec   (2924 perm/sec)   p_kst 5.073200e-02   p_cons 5.040000e-04   p_joint 9.280000e-04

Joint ci ratio: 2.508340e-01	ci left: 8.208339e-04	ci right 1.059747e-03	k: 243	n:260000
Cons ci ratio: 3.385485e-01	ci left: 4.283175e-04	ci right 6.062022e-04	k: 133	n:260000
KS ci ratio: 3.323647e-02	ci left: 4.993995e-02	ci right 5.163162e-02	k: 13203	n:260000
DACH1   260000 perm   90 sec   (2888 perm/sec)   p_kst 5.078077e-02   p_cons 5.115385e-04   p_joint 9.346154e-04

Joint ci ratio: 2.606449e-01	ci left: 7.280327e-04	ci right 9.495749e-04	k: 225	n:270000
Cons ci ratio: 3.312140e-01	ci left: 4.328080e-04	ci right 6.078338e-04	k: 139	n:270000
KS ci ratio: 3.264007e-02	ci left: 4.988282e-02	ci right 5.154166e-02	k: 13691	n:270000
DACH1   270000 perm   95 sec   (2849 perm/sec)   p_kst 5.070741e-02   p_cons 5.148148e-04   p_joint 8.333333e-04

Joint ci ratio: 2.567004e-01	ci left: 7.254106e-04	ci right 9.422791e-04	k: 232	n:280000
Cons ci ratio: 3.277226e-01	ci left: 4.271785e-04	ci right 5.977232e-04	k: 142	n:280000
KS ci ratio: 3.208062e-02	ci left: 4.981230e-02	ci right 5.143988e-02	k: 14174	n:280000
DACH1   280000 perm   100 sec   (2814 perm/sec)   p_kst 5.062143e-02   p_cons 5.071429e-04   p_joint 8.285714e-04

Joint ci ratio: 2.524040e-01	ci left: 7.262229e-04	ci right 9.391291e-04	k: 240	n:290000
Cons ci ratio: 3.199833e-01	ci left: 4.346246e-04	ci right 6.032049e-04	k: 149	n:290000
KS ci ratio: 3.152859e-02	ci left: 4.980848e-02	ci right 5.140742e-02	k: 14675	n:290000
DACH1   290000 perm   104 sec   (2781 perm/sec)   p_kst 5.060345e-02   p_cons 5.137931e-04   p_joint 8.275862e-04

Joint ci ratio: 2.493205e-01	ci left: 7.207579e-04	ci right 9.290799e-04	k: 246	n:300000
Cons ci ratio: 3.189243e-01	ci left: 4.232028e-04	ci right 5.866984e-04	k: 150	n:300000
KS ci ratio: 3.100842e-02	ci left: 4.979190e-02	ci right 5.136347e-02	k: 15172	n:300000
DACH1   300000 perm   109 sec   (2748 perm/sec)   p_kst 5.057333e-02   p_cons 5.000000e-04   p_joint 8.200000e-04

Joint ci ratio: 1.715937e-01	ci left: 1.536430e-03	ci right 1.827851e-03	k: 520	n:310000
Cons ci ratio: 3.032565e-01	ci left: 4.571388e-04	ci right 6.233976e-04	k: 166	n:310000
KS ci ratio: 3.049268e-02	ci left: 4.984064e-02	ci right 5.138713e-02	k: 15689	n:310000
DACH1   310000 perm   114 sec   (2717 perm/sec)   p_kst 5.060968e-02   p_cons 5.354839e-04   p_joint 1.677419e-03

Joint ci ratio: 1.679254e-01	ci left: 1.557240e-03	ci right 1.845655e-03	k: 543	n:320000
Cons ci ratio: 2.988164e-01	ci left: 4.572983e-04	ci right 6.207180e-04	k: 171	n:320000
KS ci ratio: 2.998626e-02	ci left: 4.993619e-02	ci right 5.145946e-02	k: 16222	n:320000
DACH1   320000 perm   119 sec   (2687 perm/sec)   p_kst 5.069375e-02   p_cons 5.343750e-04   p_joint 1.696875e-03

Joint ci ratio: 1.664047e-01	ci left: 1.539085e-03	ci right 1.821297e-03	k: 553	n:330000
Cons ci ratio: 2.945658e-01	ci left: 4.574647e-04	ci right 6.181843e-04	k: 176	n:330000
KS ci ratio: 2.952654e-02	ci left: 4.995392e-02	ci right 5.145398e-02	k: 16731	n:330000
DACH1   330000 perm   124 sec   (2657 perm/sec)   p_kst 5.070000e-02   p_cons 5.333333e-04   p_joint 1.675758e-03

Joint ci ratio: 1.639088e-01	ci left: 1.541751e-03	ci right 1.819794e-03	k: 570	n:340000
Cons ci ratio: 2.912933e-01	ci left: 4.549101e-04	ci right 6.126293e-04	k: 180	n:340000
KS ci ratio: 2.909712e-02	ci left: 4.993865e-02	ci right 5.141608e-02	k: 17229	n:340000
DACH1   340000 perm   129 sec   (2626 perm/sec)   p_kst 5.067353e-02   p_cons 5.294118e-04   p_joint 1.676471e-03

Joint ci ratio: 1.613846e-01	ci left: 1.547037e-03	ci right 1.821320e-03	k: 588	n:350000
Cons ci ratio: 2.881275e-01	ci left: 4.525108e-04	ci right 6.073825e-04	k: 184	n:350000
KS ci ratio: 2.869784e-02	ci left: 4.988468e-02	ci right 5.133992e-02	k: 17713	n:350000
DACH1   350000 perm   135 sec   (2597 perm/sec)   p_kst 5.060857e-02   p_cons 5.257143e-04   p_joint 1.680000e-03

Joint ci ratio: 1.585814e-01	ci left: 1.560062e-03	ci right 1.831393e-03	k: 609	n:360000
Cons ci ratio: 2.820917e-01	ci left: 4.605748e-04	ci right 6.143171e-04	k: 192	n:360000
KS ci ratio: 2.828919e-02	ci left: 4.991937e-02	ci right 5.135454e-02	k: 18228	n:360000
DACH1   360000 perm   140 sec   (2570 perm/sec)   p_kst 5.063333e-02   p_cons 5.333333e-04   p_joint 1.691667e-03

Joint ci ratio: 1.560433e-01	ci left: 1.569825e-03	ci right 1.838075e-03	k: 629	n:370000
Cons ci ratio: 2.771106e-01	ci left: 4.657197e-04	ci right 6.179556e-04	k: 199	n:370000
KS ci ratio: 2.791712e-02	ci left: 4.988520e-02	ci right 5.130023e-02	k: 18718	n:370000
DACH1   370000 perm   146 sec   (2541 perm/sec)   p_kst 5.058919e-02   p_cons 5.378378e-04   p_joint 1.700000e-03

Joint ci ratio: 1.603086e-01	ci left: 1.445101e-03	ci right 1.699438e-03	k: 596	n:380000
Cons ci ratio: 2.750562e-01	ci left: 4.608120e-04	ci right 6.101338e-04	k: 202	n:380000
KS ci ratio: 2.755786e-02	ci left: 4.985818e-02	ci right 5.125395e-02	k: 19210	n:380000
DACH1   380000 perm   151 sec   (2514 perm/sec)   p_kst 5.055263e-02   p_cons 5.315789e-04   p_joint 1.568421e-03

Joint ci ratio: 1.578163e-01	ci left: 1.454827e-03	ci right 1.706518e-03	k: 615	n:390000
Cons ci ratio: 2.697906e-01	ci left: 4.681085e-04	ci right 6.163994e-04	k: 210	n:390000
KS ci ratio: 2.719757e-02	ci left: 4.988360e-02	ci right 5.126155e-02	k: 19722	n:390000
DACH1   390000 perm   157 sec   (2489 perm/sec)   p_kst 5.056923e-02   p_cons 5.384615e-04   p_joint 1.576923e-03

Joint ci ratio: 1.745004e-01	ci left: 1.150054e-03	ci right 1.372272e-03	k: 503	n:400000
Cons ci ratio: 2.672696e-01	ci left: 4.657325e-04	ci right 6.116611e-04	k: 214	n:400000
KS ci ratio: 2.683640e-02	ci left: 4.996004e-02	ci right 5.132148e-02	k: 20255	n:400000
DACH1   400000 perm   162 sec   (2463 perm/sec)   p_kst 5.063750e-02   p_cons 5.350000e-04   p_joint 1.257500e-03

Joint ci ratio: 1.448570e-01	ci left: 1.653757e-03	ci right 1.914341e-03	k: 730	n:410000
Cons ci ratio: 2.636163e-01	ci left: 4.680337e-04	ci right 6.123481e-04	k: 220	n:410000
KS ci ratio: 2.653161e-02	ci left: 4.988016e-02	ci right 5.122376e-02	k: 20725	n:410000
DACH1   410000 perm   168 sec   (2438 perm/sec)   p_kst 5.054878e-02   p_cons 5.365854e-04   p_joint 1.780488e-03

Joint ci ratio: 1.451587e-01	ci left: 1.607495e-03	ci right 1.861363e-03	k: 727	n:420000
Cons ci ratio: 2.601089e-01	ci left: 4.702382e-04	ci right 6.129896e-04	k: 226	n:420000
KS ci ratio: 2.621679e-02	ci left: 4.987753e-02	ci right 5.120487e-02	k: 21226	n:420000
DACH1   420000 perm   174 sec   (2414 perm/sec)   p_kst 5.053810e-02   p_cons 5.380952e-04   p_joint 1.730952e-03

Joint ci ratio: 1.444676e-01	ci left: 1.585799e-03	ci right 1.834945e-03	k: 734	n:430000
Cons ci ratio: 2.578475e-01	ci left: 4.680008e-04	ci right 6.086390e-04	k: 230	n:430000
KS ci ratio: 2.591920e-02	ci left: 4.985199e-02	ci right 5.116337e-02	k: 21717	n:430000
DACH1   430000 perm   180 sec   (2390 perm/sec)   p_kst 5.050465e-02   p_cons 5.348837e-04   p_joint 1.706977e-03

Joint ci ratio: 1.430160e-01	ci left: 1.582623e-03	ci right 1.828558e-03	k: 749	n:440000
Cons ci ratio: 2.556440e-01	ci left: 4.658703e-04	ci right 6.044811e-04	k: 234	n:440000
KS ci ratio: 2.562362e-02	ci left: 4.985707e-02	ci right 5.115340e-02	k: 22221	n:440000
DACH1   440000 perm   186 sec   (2366 perm/sec)   p_kst 5.050227e-02   p_cons 5.318182e-04   p_joint 1.702273e-03

Joint ci ratio: 1.564404e-01	ci left: 1.284324e-03	ci right 1.504398e-03	k: 626	n:450000
Cons ci ratio: 2.513999e-01	ci left: 4.721662e-04	ci right 6.099528e-04	k: 242	n:450000
KS ci ratio: 2.533793e-02	ci left: 4.986200e-02	ci right 5.114380e-02	k: 22725	n:450000
DACH1   450000 perm   192 sec   (2343 perm/sec)   p_kst 5.050000e-02   p_cons 5.377778e-04   p_joint 1.391111e-03

Joint ci ratio: 1.542414e-01	ci left: 1.294014e-03	ci right 1.512344e-03	k: 644	n:460000
Cons ci ratio: 2.483524e-01	ci left: 4.741285e-04	ci right 6.105514e-04	k: 248	n:460000
KS ci ratio: 2.506499e-02	ci left: 4.985382e-02	ci right 5.112141e-02	k: 23223	n:460000
DACH1   460000 perm   198 sec   (2320 perm/sec)   p_kst 5.048478e-02   p_cons 5.391304e-04   p_joint 1.400000e-03

Joint ci ratio: 1.524785e-01	ci left: 1.297172e-03	ci right 1.513305e-03	k: 659	n:470000
Cons ci ratio: 2.473619e-01	ci left: 4.680315e-04	ci right 6.020804e-04	k: 250	n:470000
KS ci ratio: 2.479024e-02	ci left: 4.988626e-02	ci right 5.114057e-02	k: 23740	n:470000
DACH1   470000 perm   205 sec   (2297 perm/sec)   p_kst 5.051064e-02   p_cons 5.319149e-04   p_joint 1.402128e-03

Joint ci ratio: 1.506629e-01	ci left: 1.302217e-03	ci right 1.516374e-03	k: 675	n:480000
Cons ci ratio: 2.449344e-01	ci left: 4.680550e-04	ci right 6.005949e-04	k: 255	n:480000
KS ci ratio: 2.452646e-02	ci left: 4.990913e-02	ci right 5.115047e-02	k: 24253	n:480000
DACH1   480000 perm   211 sec   (2275 perm/sec)   p_kst 5.052708e-02   p_cons 5.312500e-04   p_joint 1.406250e-03

Joint ci ratio: 1.489106e-01	ci left: 1.307071e-03	ci right 1.519303e-03	k: 691	n:490000
Cons ci ratio: 2.430433e-01	ci left: 4.661670e-04	ci right 5.969994e-04	k: 259	n:490000
KS ci ratio: 2.426782e-02	ci left: 4.994331e-02	ci right 5.117222e-02	k: 24772	n:490000
DACH1   490000 perm   217 sec   (2254 perm/sec)   p_kst 5.055510e-02   p_cons 5.285714e-04   p_joint 1.410204e-03

Joint ci ratio: 1.475315e-01	ci left: 1.305965e-03	ci right 1.515881e-03	k: 704	n:500000
Cons ci ratio: 2.398358e-01	ci left: 4.699969e-04	ci right 5.999045e-04	k: 266	n:500000
KS ci ratio: 2.403021e-02	ci left: 4.992448e-02	ci right 5.114073e-02	k: 25265	n:500000
DACH1   500000 perm   224 sec   (2233 perm/sec)   p_kst 5.053000e-02   p_cons 5.320000e-04   p_joint 1.408000e-03

Joint ci ratio: 1.459865e-01	ci left: 1.308690e-03	ci right 1.516648e-03	k: 719	n:510000
Cons ci ratio: 2.371855e-01	ci left: 4.718430e-04	ci right 6.006081e-04	k: 272	n:510000
KS ci ratio: 2.377855e-02	ci left: 4.999029e-02	ci right 5.119522e-02	k: 25801	n:510000
DACH1   510000 perm   230 sec   (2213 perm/sec)   p_kst 5.059020e-02   p_cons 5.333333e-04   p_joint 1.409804e-03

Joint ci ratio: 1.438049e-01	ci left: 1.324297e-03	ci right 1.531321e-03	k: 741	n:520000
Cons ci ratio: 2.337842e-01	ci left: 4.772463e-04	ci right 6.053483e-04	k: 280	n:520000
KS ci ratio: 2.353228e-02	ci left: 5.006319e-02	ci right 5.125721e-02	k: 26342	n:520000
DACH1   520000 perm   237 sec   (2193 perm/sec)   p_kst 5.065769e-02   p_cons 5.384615e-04   p_joint 1.425000e-03

Joint ci ratio: 1.424672e-01	ci left: 1.324780e-03	ci right 1.529789e-03	k: 755	n:530000
Cons ci ratio: 2.325467e-01	ci left: 4.735713e-04	ci right 5.999172e-04	k: 283	n:530000
KS ci ratio: 2.329944e-02	ci left: 5.010901e-02	ci right 5.129214e-02	k: 26870	n:530000
DACH1   530000 perm   244 sec   (2174 perm/sec)   p_kst 5.069811e-02   p_cons 5.339623e-04   p_joint 1.424528e-03

Joint ci ratio: 1.535441e-01	ci left: 1.112983e-03	ci right 1.299842e-03	k: 650	n:540000
Cons ci ratio: 2.293384e-01	ci left: 4.787593e-04	ci right 6.044778e-04	k: 291	n:540000
KS ci ratio: 2.308981e-02	ci left: 5.008504e-02	ci right 5.125682e-02	k: 27361	n:540000
DACH1   540000 perm   251 sec   (2155 perm/sec)   p_kst 5.066852e-02   p_cons 5.388889e-04   p_joint 1.203704e-03

Joint ci ratio: 1.521483e-01	ci left: 1.113731e-03	ci right 1.298860e-03	k: 662	n:550000
Cons ci ratio: 2.258830e-01	ci left: 4.854855e-04	ci right 6.107821e-04	k: 300	n:550000
KS ci ratio: 2.288054e-02	ci left: 5.008369e-02	ci right 5.124468e-02	k: 27864	n:550000
DACH1   550000 perm   258 sec   (2136 perm/sec)   p_kst 5.066182e-02   p_cons 5.454545e-04   p_joint 1.203636e-03

Joint ci ratio: 1.256248e-01	ci left: 1.626654e-03	ci right 1.846409e-03	k: 971	n:560000
Cons ci ratio: 2.233011e-01	ci left: 4.886131e-04	ci right 6.130772e-04	k: 307	n:560000
KS ci ratio: 2.267602e-02	ci left: 5.008599e-02	ci right 5.123652e-02	k: 28369	n:560000
DACH1   560000 perm   264 sec   (2117 perm/sec)   p_kst 5.065893e-02   p_cons 5.482143e-04   p_joint 1.733929e-03

Joint ci ratio: 1.244145e-01	ci left: 1.630408e-03	ci right 1.848391e-03	k: 990	n:570000
Cons ci ratio: 2.204559e-01	ci left: 4.932962e-04	ci right 6.171351e-04	k: 315	n:570000
KS ci ratio: 2.248386e-02	ci left: 5.005859e-02	ci right 5.119862e-02	k: 28857	n:570000
DACH1   570000 perm   272 sec   (2099 perm/sec)   p_kst 5.062632e-02   p_cons 5.526316e-04   p_joint 1.736842e-03

Joint ci ratio: 1.233610e-01	ci left: 1.630699e-03	ci right 1.846740e-03	k: 1007	n:580000
Cons ci ratio: 2.187323e-01	ci left: 4.929376e-04	ci right 6.155889e-04	k: 320	n:580000
KS ci ratio: 2.229770e-02	ci left: 5.002702e-02	ci right 5.115678e-02	k: 29342	n:580000
DACH1   580000 perm   279 sec   (2081 perm/sec)   p_kst 5.058966e-02   p_cons 5.517241e-04   p_joint 1.736207e-03

Joint ci ratio: 1.222143e-01	ci left: 1.634275e-03	ci right 1.848631e-03	k: 1026	n:590000
Cons ci ratio: 2.170485e-01	ci left: 4.925948e-04	ci right 6.140916e-04	k: 325	n:590000
KS ci ratio: 2.210517e-02	ci left: 5.004378e-02	ci right 5.116403e-02	k: 29855	n:590000
DACH1   590000 perm   286 sec   (2064 perm/sec)   p_kst 5.060169e-02   p_cons 5.508475e-04   p_joint 1.738983e-03

Joint ci ratio: 1.212735e-01	ci left: 1.632891e-03	ci right 1.845299e-03	k: 1042	n:600000
Cons ci ratio: 2.157294e-01	ci left: 4.906902e-04	ci right 6.108842e-04	k: 329	n:600000
KS ci ratio: 2.191335e-02	ci left: 5.007825e-02	ci right 5.118943e-02	k: 30379	n:600000
DACH1   600000 perm   293 sec   (2047 perm/sec)   p_kst 5.063167e-02   p_cons 5.483333e-04   p_joint 1.736667e-03

Joint ci ratio: 1.204680e-01	ci left: 1.628379e-03	ci right 1.838693e-03	k: 1056	n:610000
Cons ci ratio: 2.134768e-01	ci left: 4.935049e-04	ci right 6.129609e-04	k: 336	n:610000
KS ci ratio: 2.175167e-02	ci left: 5.000073e-02	ci right 5.110190e-02	k: 30835	n:610000
DACH1   610000 perm   301 sec   (2029 perm/sec)   p_kst 5.054918e-02   p_cons 5.508197e-04   p_joint 1.731148e-03

Joint ci ratio: 1.196783e-01	ci left: 1.624017e-03	ci right 1.832296e-03	k: 1070	n:620000
Cons ci ratio: 2.122213e-01	ci left: 4.916528e-04	ci right 6.098695e-04	k: 340	n:620000
KS ci ratio: 2.158806e-02	ci left: 4.994981e-02	ci right 5.104149e-02	k: 31306	n:620000
DACH1   620000 perm   308 sec   (2012 perm/sec)   p_kst 5.049355e-02   p_cons 5.483871e-04   p_joint 1.725806e-03

Joint ci ratio: 1.203004e-01	ci left: 1.581301e-03	ci right 1.785230e-03	k: 1059	n:630000
Cons ci ratio: 2.109877e-01	ci left: 4.898615e-04	ci right 6.068743e-04	k: 344	n:630000
KS ci ratio: 2.141922e-02	ci left: 4.994003e-02	ci right 5.102284e-02	k: 31802	n:630000
DACH1   630000 perm   316 sec   (1995 perm/sec)   p_kst 5.047937e-02   p_cons 5.460317e-04   p_joint 1.680952e-03

Joint ci ratio: 1.215723e-01	ci left: 1.523255e-03	ci right 1.721925e-03	k: 1037	n:640000
Cons ci ratio: 2.088791e-01	ci left: 4.925700e-04	ci right 6.089034e-04	k: 351	n:640000
KS ci ratio: 2.124284e-02	ci left: 4.998188e-02	ci right 5.105657e-02	k: 32331	n:640000
DACH1   640000 perm   323 sec   (1979 perm/sec)   p_kst 5.051719e-02   p_cons 5.484375e-04   p_joint 1.620313e-03

Joint ci ratio: 1.206460e-01	ci left: 1.523690e-03	ci right 1.720794e-03	k: 1053	n:650000
Cons ci ratio: 2.065448e-01	ci left: 4.966596e-04	ci right 6.124825e-04	k: 359	n:650000
KS ci ratio: 2.108665e-02	ci left: 4.995053e-02	ci right 5.101656e-02	k: 32813	n:650000
DACH1   650000 perm   331 sec   (1963 perm/sec)   p_kst 5.048154e-02   p_cons 5.523077e-04   p_joint 1.620000e-03

Joint ci ratio: 1.200783e-01	ci left: 1.515299e-03	ci right 1.710330e-03	k: 1063	n:660000
Cons ci ratio: 2.054070e-01	ci left: 4.948824e-04	ci right 6.095753e-04	k: 363	n:660000
KS ci ratio: 2.093451e-02	ci left: 4.991715e-02	ci right 5.097468e-02	k: 33293	n:660000
DACH1   660000 perm   339 sec   (1947 perm/sec)   p_kst 5.044394e-02   p_cons 5.500000e-04   p_joint 1.610606e-03

Joint ci ratio: 1.195185e-01	ci left: 1.507160e-03	ci right 1.700175e-03	k: 1073	n:670000
Cons ci ratio: 2.031860e-01	ci left: 4.988257e-04	ci right 6.130273e-04	k: 371	n:670000
KS ci ratio: 2.078788e-02	ci left: 4.987439e-02	ci right 5.092353e-02	k: 33766	n:670000
DACH1   670000 perm   347 sec   (1931 perm/sec)   p_kst 5.039701e-02   p_cons 5.537313e-04   p_joint 1.601493e-03

Joint ci ratio: 1.195199e-01	ci left: 1.484995e-03	ci right 1.675174e-03	k: 1073	n:680000
Cons ci ratio: 2.023720e-01	ci left: 4.956777e-04	ci right 6.086478e-04	k: 374	n:680000
KS ci ratio: 2.063256e-02	ci left: 4.988706e-02	ci right 5.092854e-02	k: 34276	n:680000
DACH1   680000 perm   355 sec   (1916 perm/sec)   p_kst 5.040588e-02   p_cons 5.500000e-04   p_joint 1.577941e-03

Joint ci ratio: 1.192436e-01	ci left: 1.470503e-03	ci right 1.658359e-03	k: 1078	n:690000
Cons ci ratio: 2.010362e-01	ci left: 4.953744e-04	ci right 6.074387e-04	k: 379	n:690000
KS ci ratio: 2.048624e-02	ci left: 4.987344e-02	ci right 5.090715e-02	k: 34768	n:690000
DACH1   690000 perm   363 sec   (1901 perm/sec)   p_kst 5.038841e-02   p_cons 5.492754e-04   p_joint 1.562319e-03

Joint ci ratio: 1.181533e-01	ci left: 1.477219e-03	ci right 1.664088e-03	k: 1098	n:700000
Cons ci ratio: 1.994676e-01	ci left: 4.964393e-04	ci right 6.077616e-04	k: 385	n:700000
KS ci ratio: 2.034634e-02	ci left: 4.984459e-02	ci right 5.087057e-02	k: 35249	n:700000
DACH1   700000 perm   371 sec   (1886 perm/sec)   p_kst 5.035571e-02   p_cons 5.500000e-04   p_joint 1.568571e-03

Joint ci ratio: 1.191910e-01	ci left: 1.430445e-03	ci right 1.613098e-03	k: 1079	n:710000
Cons ci ratio: 1.981882e-01	ci left: 4.961389e-04	ci right 6.065940e-04	k: 390	n:710000
KS ci ratio: 2.020361e-02	ci left: 4.984320e-02	ci right 5.086188e-02	k: 35749	n:710000
DACH1   710000 perm   380 sec   (1871 perm/sec)   p_kst 5.035070e-02   p_cons 5.492958e-04   p_joint 1.519718e-03

Joint ci ratio: 1.181558e-01	ci left: 1.436183e-03	ci right 1.617865e-03	k: 1098	n:720000
Cons ci ratio: 1.966848e-01	ci left: 4.971695e-04	ci right 6.069138e-04	k: 396	n:720000
KS ci ratio: 2.006764e-02	ci left: 4.982392e-02	ci right 5.083526e-02	k: 36236	n:720000
DACH1   720000 perm   388 sec   (1857 perm/sec)   p_kst 5.032778e-02   p_cons 5.500000e-04   p_joint 1.525000e-03

Joint ci ratio: 1.174105e-01	ci left: 1.435123e-03	ci right 1.615445e-03	k: 1112	n:730000
Cons ci ratio: 1.961917e-01	ci left: 4.929638e-04	ci right 6.014743e-04	k: 398	n:730000
KS ci ratio: 1.993465e-02	ci left: 4.980381e-02	ci right 5.080798e-02	k: 36722	n:730000
DACH1   730000 perm   396 sec   (1842 perm/sec)   p_kst 5.030411e-02   p_cons 5.452055e-04   p_joint 1.523288e-03

Joint ci ratio: 1.193053e-01	ci left: 1.369829e-03	ci right 1.544922e-03	k: 1077	n:740000
Cons ci ratio: 1.957023e-01	ci left: 4.888722e-04	ci right 5.961816e-04	k: 400	n:740000
KS ci ratio: 1.979700e-02	ci left: 4.981925e-02	ci right 5.081671e-02	k: 37234	n:740000
DACH1   740000 perm   405 sec   (1827 perm/sec)   p_kst 5.031622e-02   p_cons 5.405405e-04   p_joint 1.455405e-03

Joint ci ratio: 1.185381e-01	ci left: 1.369676e-03	ci right 1.543544e-03	k: 1091	n:750000
Cons ci ratio: 1.944935e-01	ci left: 4.886949e-04	ci right 5.952244e-04	k: 405	n:750000
KS ci ratio: 1.966572e-02	ci left: 4.981704e-02	ci right 5.080777e-02	k: 37733	n:750000
DACH1   750000 perm   414 sec   (1813 perm/sec)   p_kst 5.031067e-02   p_cons 5.400000e-04   p_joint 1.454667e-03

Joint ci ratio: 1.179994e-01	ci left: 1.364423e-03	ci right 1.536782e-03	k: 1101	n:760000
Cons ci ratio: 1.935426e-01	ci left: 4.872722e-04	ci right 5.929111e-04	k: 409	n:760000
KS ci ratio: 1.954160e-02	ci left: 4.979265e-02	ci right 5.077657e-02	k: 38215	n:760000
DACH1   760000 perm   422 sec   (1800 perm/sec)   p_kst 5.028289e-02   p_cons 5.381579e-04   p_joint 1.448684e-03

Joint ci ratio: 1.065162e-01	ci left: 1.662298e-03	ci right 1.850573e-03	k: 1351	n:770000
Cons ci ratio: 1.926056e-01	ci left: 4.858876e-04	ci right 5.906566e-04	k: 413	n:770000
KS ci ratio: 1.941345e-02	ci left: 4.979994e-02	ci right 5.077748e-02	k: 38721	n:770000
DACH1   770000 perm   431 sec   (1787 perm/sec)   p_kst 5.028701e-02   p_cons 5.363636e-04   p_joint 1.754545e-03

Joint ci ratio: 1.057755e-01	ci left: 1.664699e-03	ci right 1.851853e-03	k: 1370	n:780000
Cons ci ratio: 1.909974e-01	ci left: 4.882018e-04	ci right 5.924887e-04	k: 420	n:780000
KS ci ratio: 1.928030e-02	ci left: 4.984407e-02	ci right 5.081569e-02	k: 39256	n:780000
DACH1   780000 perm   440 sec   (1773 perm/sec)   p_kst 5.032821e-02   p_cons 5.384615e-04   p_joint 1.756410e-03

Joint ci ratio: 1.052017e-01	ci left: 1.662113e-03	ci right 1.847900e-03	k: 1385	n:790000
Cons ci ratio: 1.907715e-01	ci left: 4.832272e-04	ci right 5.863153e-04	k: 421	n:790000
KS ci ratio: 1.916176e-02	ci left: 4.982788e-02	ci right 5.079315e-02	k: 39744	n:790000
DACH1   790000 perm   449 sec   (1761 perm/sec)   p_kst 5.030886e-02   p_cons 5.329114e-04   p_joint 1.753165e-03

Joint ci ratio: 1.048247e-01	ci left: 1.653508e-03	ci right 1.837630e-03	k: 1395	n:800000
Cons ci ratio: 1.903215e-01	ci left: 4.795675e-04	ci right 5.816056e-04	k: 423	n:800000
KS ci ratio: 1.903916e-02	ci left: 4.984322e-02	ci right 5.080254e-02	k: 40257	n:800000
DACH1   800000 perm   458 sec   (1748 perm/sec)   p_kst 5.032125e-02   p_cons 5.287500e-04   p_joint 1.743750e-03

Joint ci ratio: 1.041554e-01	ci left: 1.654736e-03	ci right 1.837746e-03	k: 1413	n:810000
Cons ci ratio: 1.889889e-01	ci left: 4.807027e-04	ci right 5.821839e-04	k: 429	n:810000
KS ci ratio: 1.892450e-02	ci left: 4.982993e-02	ci right 5.078316e-02	k: 40747	n:810000
DACH1   810000 perm   467 sec   (1736 perm/sec)   p_kst 5.030494e-02   p_cons 5.296296e-04   p_joint 1.744444e-03

Joint ci ratio: 1.035711e-01	ci left: 1.653562e-03	ci right 1.835353e-03	k: 1429	n:820000
Cons ci ratio: 1.878996e-01	ci left: 4.806504e-04	ci right 5.814690e-04	k: 434	n:820000
KS ci ratio: 1.881333e-02	ci left: 4.980971e-02	ci right 5.075689e-02	k: 41231	n:820000
DACH1   820000 perm   476 sec   (1723 perm/sec)   p_kst 5.028171e-02   p_cons 5.292683e-04   p_joint 1.742683e-03

Joint ci ratio: 1.027832e-01	ci left: 1.659461e-03	ci right 1.840430e-03	k: 1451	n:830000
Cons ci ratio: 1.870418e-01	ci left: 4.794525e-04	ci right 5.795086e-04	k: 438	n:830000
KS ci ratio: 1.869702e-02	ci left: 4.982597e-02	ci right 5.076754e-02	k: 41745	n:830000
DACH1   830000 perm   485 sec   (1711 perm/sec)   p_kst 5.029518e-02   p_cons 5.277108e-04   p_joint 1.748193e-03

Joint ci ratio: 1.024316e-01	ci left: 1.651305e-03	ci right 1.830730e-03	k: 1461	n:840000
Cons ci ratio: 1.859857e-01	ci left: 4.794192e-04	ci right 5.788397e-04	k: 443	n:840000
KS ci ratio: 1.858817e-02	ci left: 4.981460e-02	ci right 5.075041e-02	k: 42236	n:840000
DACH1   840000 perm   494 sec   (1700 perm/sec)   p_kst 5.028095e-02   p_cons 5.273810e-04   p_joint 1.739286e-03

Joint ci ratio: 1.018757e-01	ci left: 1.650220e-03	ci right 1.828497e-03	k: 1477	n:850000
Cons ci ratio: 1.849473e-01	ci left: 4.793882e-04	ci right 5.781850e-04	k: 448	n:850000
KS ci ratio: 1.847915e-02	ci left: 4.981405e-02	ci right 5.074431e-02	k: 42736	n:850000
DACH1   850000 perm   504 sec   (1687 perm/sec)   p_kst 5.027765e-02   p_cons 5.270588e-04   p_joint 1.737647e-03

Joint ci ratio: 1.012271e-01	ci left: 1.652564e-03	ci right 1.829889e-03	k: 1496	n:860000
Cons ci ratio: 1.837237e-01	ci left: 4.804688e-04	ci right 5.787602e-04	k: 454	n:860000
KS ci ratio: 1.836866e-02	ci left: 4.983090e-02	ci right 5.075585e-02	k: 43251	n:860000
DACH1   860000 perm   513 sec   (1675 perm/sec)   p_kst 5.029186e-02   p_cons 5.279070e-04   p_joint 1.739535e-03

Joint ci ratio: 1.009246e-01	ci left: 1.643652e-03	ci right 1.819463e-03	k: 1505	n:870000
Cons ci ratio: 1.833216e-01	ci left: 4.771393e-04	ci right 5.745122e-04	k: 456	n:870000
KS ci ratio: 1.826300e-02	ci left: 4.983250e-02	ci right 5.075211e-02	k: 43753	n:870000
DACH1   870000 perm   523 sec   (1664 perm/sec)   p_kst 5.029080e-02   p_cons 5.241379e-04   p_joint 1.729885e-03

Joint ci ratio: 1.006582e-01	ci left: 1.633835e-03	ci right 1.808107e-03	k: 1513	n:880000
Cons ci ratio: 1.825247e-01	ci left: 4.760546e-04	ci right 5.727370e-04	k: 460	n:880000
KS ci ratio: 1.815762e-02	ci left: 4.984200e-02	ci right 5.075642e-02	k: 44262	n:880000
DACH1   880000 perm   532 sec   (1653 perm/sec)   p_kst 5.029773e-02   p_cons 5.227273e-04   p_joint 1.719318e-03

Joint ci ratio: 1.000323e-01	ci left: 1.636290e-03	ci right 1.809675e-03	k: 1532	n:890000
Cons ci ratio: 1.813483e-01	ci left: 4.771402e-04	ci right 5.733500e-04	k: 466	n:890000
KS ci ratio: 1.805001e-02	ci left: 4.987256e-02	ci right 5.078206e-02	k: 44790	n:890000
DACH1   890000 perm   542 sec   (1641 perm/sec)   p_kst 5.032584e-02   p_cons 5.235955e-04   p_joint 1.721348e-03

Joint ci ratio: 9.954662e-02	ci left: 1.634360e-03	ci right 1.806650e-03	k: 1547	n:900000
Cons ci ratio: 1.803852e-01	ci left: 4.771427e-04	ci right 5.727863e-04	k: 471	n:900000
KS ci ratio: 1.794680e-02	ci left: 4.988917e-02	ci right 5.079372e-02	k: 45306	n:900000
DACH1   900000 perm   552 sec   (1630 perm/sec)   p_kst 5.034000e-02   p_cons 5.233333e-04   p_joint 1.718889e-03

Joint ci ratio: 1.006610e-01	ci left: 1.579970e-03	ci right 1.748502e-03	k: 1513	n:910000
Cons ci ratio: 1.794373e-01	ci left: 4.771464e-04	ci right 5.722336e-04	k: 476	n:910000
KS ci ratio: 1.785149e-02	ci left: 4.987261e-02	ci right 5.077201e-02	k: 45792	n:910000
DACH1   910000 perm   562 sec   (1620 perm/sec)   p_kst 5.032088e-02   p_cons 5.230769e-04   p_joint 1.662637e-03

Joint ci ratio: 1.044255e-01	ci left: 1.449469e-03	ci right 1.610217e-03	k: 1406	n:920000
Cons ci ratio: 1.786898e-01	ci left: 4.761130e-04	ci right 5.705562e-04	k: 480	n:920000
KS ci ratio: 1.775789e-02	ci left: 4.985534e-02	ci right 5.074967e-02	k: 46277	n:920000
DACH1   920000 perm   572 sec   (1609 perm/sec)   p_kst 5.030109e-02   p_cons 5.217391e-04   p_joint 1.528261e-03

Joint ci ratio: 1.040934e-01	ci left: 1.443308e-03	ci right 1.602833e-03	k: 1415	n:930000
Cons ci ratio: 1.777682e-01	ci left: 4.761300e-04	ci right 5.700372e-04	k: 485	n:930000
KS ci ratio: 1.766574e-02	ci left: 4.983845e-02	ci right 5.072779e-02	k: 46762	n:930000
DACH1   930000 perm   582 sec   (1599 perm/sec)   p_kst 5.028172e-02   p_cons 5.215054e-04   p_joint 1.521505e-03

Joint ci ratio: 1.039473e-01	ci left: 1.432098e-03	ci right 1.590148e-03	k: 1419	n:940000
Cons ci ratio: 1.772223e-01	ci left: 4.741144e-04	ci right 5.673061e-04	k: 488	n:940000
KS ci ratio: 1.757247e-02	ci left: 4.983571e-02	ci right 5.072025e-02	k: 47260	n:940000
DACH1   940000 perm   592 sec   (1588 perm/sec)   p_kst 5.027660e-02   p_cons 5.191489e-04   p_joint 1.509574e-03

Joint ci ratio: 1.035835e-01	ci left: 1.427276e-03	ci right 1.584209e-03	k: 1429	n:950000
Cons ci ratio: 1.770418e-01	ci left: 4.701296e-04	ci right 5.624338e-04	k: 489	n:950000
KS ci ratio: 1.747873e-02	ci left: 4.984352e-02	ci right 5.072344e-02	k: 47768	n:950000
DACH1   950000 perm   602 sec   (1578 perm/sec)   p_kst 5.028211e-02   p_cons 5.147368e-04   p_joint 1.504211e-03

Joint ci ratio: 1.035119e-01	ci left: 1.414438e-03	ci right 1.569845e-03	k: 1431	n:960000
Cons ci ratio: 1.759676e-01	ci left: 4.712064e-04	ci right 5.631010e-04	k: 495	n:960000
KS ci ratio: 1.738382e-02	ci left: 4.986570e-02	ci right 5.074118e-02	k: 48290	n:960000
DACH1   960000 perm   613 sec   (1567 perm/sec)   p_kst 5.030208e-02   p_cons 5.156250e-04   p_joint 1.490625e-03

Joint ci ratio: 1.034043e-01	ci left: 1.402868e-03	ci right 1.556834e-03	k: 1434	n:970000
Cons ci ratio: 1.749128e-01	ci left: 4.722625e-04	ci right 5.637527e-04	k: 501	n:970000
KS ci ratio: 1.729306e-02	ci left: 4.987306e-02	ci right 5.074406e-02	k: 48798	n:970000
DACH1   970000 perm   623 sec   (1557 perm/sec)   p_kst 5.030722e-02   p_cons 5.164948e-04   p_joint 1.478351e-03

Joint ci ratio: 1.029391e-01	ci left: 1.401476e-03	ci right 1.554556e-03	k: 1447	n:980000
Cons ci ratio: 1.742202e-01	ci left: 4.713468e-04	ci right 5.622599e-04	k: 505	n:980000
KS ci ratio: 1.720590e-02	ci left: 4.986809e-02	ci right 5.073457e-02	k: 49294	n:980000
DACH1   980000 perm   633 sec   (1548 perm/sec)   p_kst 5.030000e-02   p_cons 5.153061e-04   p_joint 1.476531e-03

Joint ci ratio: 9.770688e-02	ci left: 1.543904e-03	ci right 1.703479e-03	k: 1606	n:990000
Cons ci ratio: 1.731963e-01	ci left: 4.723829e-04	ci right 5.629044e-04	k: 511	n:990000
KS ci ratio: 1.711426e-02	ci left: 4.989543e-02	ci right 5.075771e-02	k: 49822	n:990000
DACH1   990000 perm   644 sec   (1538 perm/sec)   p_kst 5.032525e-02   p_cons 5.161616e-04   p_joint 1.622222e-03

Joint ci ratio: 9.710431e-02	ci left: 1.547978e-03	ci right 1.706931e-03	k: 1626	n:1000000
Cons ci ratio: 1.725238e-01	ci left: 4.714860e-04	ci right 5.614482e-04	k: 515	n:1000000
KS ci ratio: 1.702336e-02	ci left: 4.992621e-02	ci right 5.078440e-02	k: 50354	n:1000000
DACH1   1000000 perm   654 sec   (1528 perm/sec)   p_kst 5.035400e-02   p_cons 5.150000e-04   p_joint 1.626000e-03

Joint ci ratio: 9.665982e-02	ci left: 1.547143e-03	ci right 1.705242e-03	k: 1641	n:1010000
Cons ci ratio: 1.718590e-01	ci left: 4.706075e-04	ci right 5.600203e-04	k: 519	n:1010000
KS ci ratio: 1.693827e-02	ci left: 4.993174e-02	ci right 5.078569e-02	k: 50861	n:1010000
DACH1   1010000 perm   665 sec   (1519 perm/sec)   p_kst 5.035743e-02   p_cons 5.138614e-04   p_joint 1.624752e-03

Joint ci ratio: 9.657227e-02	ci left: 1.534845e-03	ci right 1.691537e-03	k: 1644	n:1020000
Cons ci ratio: 1.713656e-01	ci left: 4.688085e-04	ci right 5.575973e-04	k: 522	n:1020000
KS ci ratio: 1.685634e-02	ci left: 4.992643e-02	ci right 5.077612e-02	k: 51357	n:1020000
DACH1   1020000 perm   676 sec   (1510 perm/sec)   p_kst 5.035000e-02   p_cons 5.117647e-04   p_joint 1.611765e-03

Joint ci ratio: 9.666134e-02	ci left: 1.517100e-03	ci right 1.672132e-03	k: 1641	n:1030000
Cons ci ratio: 1.705523e-01	ci left: 4.689036e-04	ci right 5.572456e-04	k: 527	n:1030000
KS ci ratio: 1.677440e-02	ci left: 4.992801e-02	ci right 5.077355e-02	k: 51860	n:1030000
DACH1   1030000 perm   686 sec   (1501 perm/sec)   p_kst 5.034951e-02   p_cons 5.116505e-04   p_joint 1.593204e-03

Joint ci ratio: 1.018574e-01	ci left: 1.349664e-03	ci right 1.495443e-03	k: 1478	n:1040000
Cons ci ratio: 1.700700e-01	ci left: 4.671566e-04	ci right 5.548950e-04	k: 530	n:1040000
KS ci ratio: 1.670272e-02	ci left: 4.987784e-02	ci right 5.071890e-02	k: 52309	n:1040000
DACH1   1040000 perm   697 sec   (1491 perm/sec)   p_kst 5.029712e-02   p_cons 5.096154e-04   p_joint 1.421154e-03

Joint ci ratio: 1.013448e-01	ci left: 1.350733e-03	ci right 1.495849e-03	k: 1493	n:1050000
Cons ci ratio: 1.688029e-01	ci left: 4.700035e-04	ci right 5.575520e-04	k: 538	n:1050000
KS ci ratio: 1.661504e-02	ci left: 4.992540e-02	ci right 5.076280e-02	k: 52860	n:1050000
DACH1   1050000 perm   709 sec   (1482 perm/sec)   p_kst 5.034286e-02   p_cons 5.123810e-04   p_joint 1.421905e-03

Joint ci ratio: 1.015841e-01	ci left: 1.331553e-03	ci right 1.474967e-03	k: 1486	n:1060000
Cons ci ratio: 1.677172e-01	ci left: 4.718952e-04	ci right 5.591737e-04	k: 545	n:1060000
KS ci ratio: 1.653036e-02	ci left: 4.996268e-02	ci right 5.079639e-02	k: 53401	n:1060000
DACH1   1060000 perm   720 sec   (1473 perm/sec)   p_kst 5.037830e-02   p_cons 5.141509e-04   p_joint 1.401887e-03

Joint ci ratio: 9.018451e-02	ci left: 1.683109e-03	ci right 1.842972e-03	k: 1885	n:1070000
Cons ci ratio: 1.663515e-01	ci left: 4.755446e-04	ci right 5.627102e-04	k: 554	n:1070000
KS ci ratio: 1.644840e-02	ci left: 4.999089e-02	ci right 5.082089e-02	k: 53933	n:1070000
DACH1   1070000 perm   731 sec   (1463 perm/sec)   p_kst 5.040467e-02   p_cons 5.177570e-04   p_joint 1.761682e-03

Joint ci ratio: 8.968643e-02	ci left: 1.686531e-03	ci right 1.845789e-03	k: 1906	n:1080000
Cons ci ratio: 1.650186e-01	ci left: 4.791293e-04	ci right 5.661784e-04	k: 563	n:1080000
KS ci ratio: 1.636844e-02	ci left: 5.001398e-02	ci right 5.084029e-02	k: 54460	n:1080000
DACH1   1080000 perm   743 sec   (1454 perm/sec)   p_kst 5.042593e-02   p_cons 5.212963e-04   p_joint 1.764815e-03

Joint ci ratio: 8.921970e-02	ci left: 1.688997e-03	ci right 1.847614e-03	k: 1926	n:1090000
Cons ci ratio: 1.641477e-01	ci left: 4.800115e-04	ci right 5.667152e-04	k: 569	n:1090000
KS ci ratio: 1.628620e-02	ci left: 5.005675e-02	ci right 5.087958e-02	k: 55009	n:1090000
DACH1   1090000 perm   754 sec   (1446 perm/sec)   p_kst 5.046697e-02   p_cons 5.220183e-04   p_joint 1.766972e-03

Joint ci ratio: 8.844222e-02	ci left: 1.703865e-03	ci right 1.862413e-03	k: 1960	n:1100000
Cons ci ratio: 1.637176e-01	ci left: 4.782631e-04	ci right 5.644023e-04	k: 572	n:1100000
KS ci ratio: 1.621350e-02	ci left: 5.004986e-02	ci right 5.086887e-02	k: 55504	n:1100000
DACH1   1100000 perm   765 sec   (1437 perm/sec)   p_kst 5.045818e-02   p_cons 5.200000e-04   p_joint 1.781818e-03

Joint ci ratio: 8.801680e-02	ci left: 1.705255e-03	ci right 1.863129e-03	k: 1979	n:1110000
Cons ci ratio: 1.635753e-01	ci left: 4.748184e-04	ci right 5.602555e-04	k: 573	n:1110000
KS ci ratio: 1.614236e-02	ci left: 5.003951e-02	ci right 5.085473e-02	k: 55995	n:1110000
DACH1   1110000 perm   777 sec   (1429 perm/sec)   p_kst 5.044595e-02   p_cons 5.162162e-04   p_joint 1.782883e-03

Joint ci ratio: 8.753170e-02	ci left: 1.709241e-03	ci right 1.866568e-03	k: 2001	n:1120000
Cons ci ratio: 1.634333e-01	ci left: 4.714352e-04	ci right 5.561826e-04	k: 574	n:1120000
KS ci ratio: 1.606976e-02	ci left: 5.004359e-02	ci right 5.085517e-02	k: 56502	n:1120000
DACH1   1120000 perm   788 sec   (1421 perm/sec)   p_kst 5.044821e-02   p_cons 5.125000e-04   p_joint 1.786607e-03

Joint ci ratio: 8.696847e-02	ci left: 1.716622e-03	ci right 1.873560e-03	k: 2027	n:1130000
Cons ci ratio: 1.624473e-01	ci left: 4.732053e-04	ci right 5.577077e-04	k: 581	n:1130000
KS ci ratio: 1.599266e-02	ci left: 5.008022e-02	ci right 5.088846e-02	k: 57046	n:1130000
DACH1   1130000 perm   800 sec   (1412 perm/sec)   p_kst 5.048319e-02   p_cons 5.141593e-04   p_joint 1.793805e-03

Joint ci ratio: 8.671253e-02	ci left: 1.711862e-03	ci right 1.867880e-03	k: 2039	n:1140000
Cons ci ratio: 1.616163e-01	ci left: 4.741042e-04	ci right 5.582919e-04	k: 587	n:1140000
KS ci ratio: 1.592773e-02	ci left: 5.004980e-02	ci right 5.085424e-02	k: 57514	n:1140000
DACH1   1140000 perm   812 sec   (1404 perm/sec)   p_kst 5.045088e-02   p_cons 5.149123e-04   p_joint 1.788596e-03

Joint ci ratio: 8.675582e-02	ci left: 1.695274e-03	ci right 1.849861e-03	k: 2037	n:1150000
Cons ci ratio: 1.607979e-01	ci left: 4.749885e-04	ci right 5.588648e-04	k: 593	n:1150000
KS ci ratio: 1.586056e-02	ci left: 5.003811e-02	ci right 5.083894e-02	k: 58003	n:1150000
DACH1   1150000 perm   824 sec   (1396 perm/sec)   p_kst 5.043739e-02   p_cons 5.156522e-04   p_joint 1.771304e-03

Joint ci ratio: 8.637521e-02	ci left: 1.695841e-03	ci right 1.849767e-03	k: 2055	n:1160000
Cons ci ratio: 1.602593e-01	ci left: 4.742035e-04	ci right 5.576337e-04	k: 597	n:1160000
KS ci ratio: 1.579111e-02	ci left: 5.004552e-02	ci right 5.084293e-02	k: 58514	n:1160000
DACH1   1160000 perm   836 sec   (1387 perm/sec)   p_kst 5.044310e-02   p_cons 5.146552e-04   p_joint 1.771552e-03

Joint ci ratio: 8.608276e-02	ci left: 1.693054e-03	ci right 1.846181e-03	k: 2069	n:1170000
Cons ci ratio: 1.591978e-01	ci left: 4.767148e-04	ci right 5.599783e-04	k: 605	n:1170000
KS ci ratio: 1.572607e-02	ci left: 5.003153e-02	ci right 5.082540e-02	k: 59000	n:1170000
DACH1   1170000 perm   849 sec   (1379 perm/sec)   p_kst 5.042735e-02   p_cons 5.170940e-04   p_joint 1.768376e-03

Joint ci ratio: 8.564928e-02	ci left: 1.696121e-03	ci right 1.848714e-03	k: 2090	n:1180000
Cons ci ratio: 1.581571e-01	ci left: 4.791854e-04	ci right 5.622813e-04	k: 613	n:1180000
KS ci ratio: 1.565517e-02	ci left: 5.005830e-02	ci right 5.084899e-02	k: 59534	n:1180000
DACH1   1180000 perm   861 sec   (1371 perm/sec)   p_kst 5.045254e-02   p_cons 5.194915e-04   p_joint 1.771186e-03

Joint ci ratio: 8.542513e-02	ci left: 1.690913e-03	ci right 1.842620e-03	k: 2101	n:1190000
Cons ci ratio: 1.577723e-01	ci left: 4.775799e-04	ci right 5.601768e-04	k: 616	n:1190000
KS ci ratio: 1.558947e-02	ci left: 5.005868e-02	ci right 5.084603e-02	k: 60037	n:1190000
DACH1   1190000 perm   873 sec   (1363 perm/sec)   p_kst 5.045126e-02   p_cons 5.176471e-04   p_joint 1.765546e-03

Joint ci ratio: 8.500146e-02	ci left: 1.693950e-03	ci right 1.845138e-03	k: 2122	n:1200000
Cons ci ratio: 1.575174e-01	ci left: 4.752009e-04	ci right 5.572411e-04	k: 618	n:1200000
KS ci ratio: 1.551797e-02	ci left: 5.009975e-02	ci right 5.088409e-02	k: 60589	n:1200000
DACH1   1200000 perm   885 sec   (1356 perm/sec)   p_kst 5.049083e-02   p_cons 5.150000e-04   p_joint 1.768333e-03

Joint ci ratio: 8.460380e-02	ci left: 1.696129e-03	ci right 1.846768e-03	k: 2142	n:1210000
Cons ci ratio: 1.567594e-01	ci left: 4.760374e-04	ci right 5.577893e-04	k: 624	n:1210000
KS ci ratio: 1.545397e-02	ci left: 5.009979e-02	ci right 5.088087e-02	k: 61092	n:1210000
DACH1   1210000 perm   897 sec   (1348 perm/sec)   p_kst 5.048926e-02   p_cons 5.157025e-04   p_joint 1.770248e-03

Joint ci ratio: 8.107984e-02	ci left: 1.834744e-03	ci right 1.990587e-03	k: 2332	n:1220000
Cons ci ratio: 1.563847e-01	ci left: 4.744981e-04	ci right 5.557726e-04	k: 627	n:1220000
KS ci ratio: 1.538917e-02	ci left: 5.010964e-02	ci right 5.088757e-02	k: 61607	n:1220000
DACH1   1220000 perm   910 sec   (1340 perm/sec)   p_kst 5.049754e-02   p_cons 5.139344e-04   p_joint 1.911475e-03

Joint ci ratio: 8.080334e-02	ci left: 1.832572e-03	ci right 1.987675e-03	k: 2348	n:1230000
Cons ci ratio: 1.558891e-01	ci left: 4.737653e-04	ci right 5.546331e-04	k: 631	n:1230000
KS ci ratio: 1.533051e-02	ci left: 5.008613e-02	ci right 5.086070e-02	k: 62081	n:1230000
DACH1   1230000 perm   923 sec   (1333 perm/sec)   p_kst 5.047236e-02   p_cons 5.130081e-04   p_joint 1.908943e-03

Joint ci ratio: 8.052964e-02	ci left: 1.830436e-03	ci right 1.984809e-03	k: 2364	n:1240000
Cons ci ratio: 1.553982e-01	ci left: 4.730448e-04	ci right 5.535116e-04	k: 635	n:1240000
KS ci ratio: 1.526905e-02	ci left: 5.008470e-02	ci right 5.085612e-02	k: 62582	n:1240000
DACH1   1240000 perm   935 sec   (1326 perm/sec)   p_kst 5.046935e-02   p_cons 5.120968e-04   p_joint 1.906452e-03

Joint ci ratio: 8.053026e-02	ci left: 1.815792e-03	ci right 1.968931e-03	k: 2364	n:1250000
Cons ci ratio: 1.546703e-01	ci left: 4.738742e-04	ci right 5.540696e-04	k: 641	n:1250000
KS ci ratio: 1.520578e-02	ci left: 5.009923e-02	ci right 5.086765e-02	k: 63103	n:1250000
DACH1   1250000 perm   948 sec   (1319 perm/sec)   p_kst 5.048240e-02   p_cons 5.128000e-04   p_joint 1.891200e-03

Joint ci ratio: 8.025932e-02	ci left: 1.813824e-03	ci right 1.966258e-03	k: 2380	n:1260000
Cons ci ratio: 1.541907e-01	ci left: 4.731653e-04	ci right 5.529694e-04	k: 645	n:1260000
KS ci ratio: 1.514505e-02	ci left: 5.010248e-02	ci right 5.086785e-02	k: 63610	n:1260000
DACH1   1260000 perm   961 sec   (1312 perm/sec)   p_kst 5.048413e-02   p_cons 5.119048e-04   p_joint 1.888889e-03

Joint ci ratio: 7.999110e-02	ci left: 1.811888e-03	ci right 1.963626e-03	k: 2396	n:1270000
Cons ci ratio: 1.537156e-01	ci left: 4.724678e-04	ci right 5.518862e-04	k: 649	n:1270000
KS ci ratio: 1.508541e-02	ci left: 5.010332e-02	ci right 5.086566e-02	k: 64114	n:1270000
DACH1   1270000 perm   973 sec   (1305 perm/sec)   p_kst 5.048346e-02   p_cons 5.110236e-04   p_joint 1.886614e-03

Joint ci ratio: 7.926610e-02	ci left: 1.831424e-03	ci right 1.983344e-03	k: 2440	n:1280000
Cons ci ratio: 1.525464e-01	ci left: 4.762899e-04	ci right 5.556861e-04	k: 659	n:1280000
KS ci ratio: 1.502635e-02	ci left: 5.010493e-02	ci right 5.086429e-02	k: 64619	n:1280000
DACH1   1280000 perm   986 sec   (1298 perm/sec)   p_kst 5.048359e-02   p_cons 5.148438e-04   p_joint 1.906250e-03

Joint ci ratio: 7.895940e-02	ci left: 1.831664e-03	ci right 1.982989e-03	k: 2459	n:1290000
Cons ci ratio: 1.523160e-01	ci left: 4.740889e-04	ci right 5.529880e-04	k: 661	n:1290000
KS ci ratio: 1.496580e-02	ci left: 5.012043e-02	ci right 5.087694e-02	k: 65142	n:1290000
DACH1   1290000 perm   999 sec   (1291 perm/sec)   p_kst 5.049767e-02   p_cons 5.124031e-04   p_joint 1.906202e-03

Joint ci ratio: 7.871989e-02	ci left: 1.828885e-03	ci right 1.979502e-03	k: 2474	n:1300000
Cons ci ratio: 1.515169e-01	ci left: 4.756220e-04	ci right 5.543233e-04	k: 668	n:1300000
KS ci ratio: 1.490812e-02	ci left: 5.012190e-02	ci right 5.087549e-02	k: 65647	n:1300000
DACH1   1300000 perm   1012 sec   (1285 perm/sec)   p_kst 5.049769e-02   p_cons 5.138462e-04   p_joint 1.903077e-03

Joint ci ratio: 7.827808e-02	ci left: 1.835879e-03	ci right 1.986184e-03	k: 2502	n:1310000
Cons ci ratio: 1.507303e-01	ci left: 4.771328e-04	ci right 5.556373e-04	k: 675	n:1310000
KS ci ratio: 1.484686e-02	ci left: 5.015074e-02	ci right 5.090163e-02	k: 66188	n:1310000
DACH1   1310000 perm   1025 sec   (1278 perm/sec)   p_kst 5.052519e-02   p_cons 5.152672e-04   p_joint 1.909924e-03

Joint ci ratio: 7.746127e-02	ci left: 1.861341e-03	ci right 2.012069e-03	k: 2555	n:1320000
Cons ci ratio: 1.500657e-01	ci left: 4.778926e-04	ci right 5.561442e-04	k: 681	n:1320000
KS ci ratio: 1.478938e-02	ci left: 5.015951e-02	ci right 5.090761e-02	k: 66703	n:1320000
DACH1   1320000 perm   1038 sec   (1272 perm/sec)   p_kst 5.053258e-02   p_cons 5.159091e-04   p_joint 1.935606e-03

Joint ci ratio: 7.725015e-02	ci left: 1.857669e-03	ci right 2.007671e-03	k: 2569	n:1330000
Cons ci ratio: 1.491931e-01	ci left: 4.800893e-04	ci right 5.582027e-04	k: 689	n:1330000
KS ci ratio: 1.473879e-02	ci left: 5.012771e-02	ci right 5.087275e-02	k: 67164	n:1330000
DACH1   1330000 perm   1051 sec   (1265 perm/sec)   p_kst 5.049925e-02   p_cons 5.180451e-04   p_joint 1.931579e-03

Joint ci ratio: 7.671424e-02	ci left: 1.870155e-03	ci right 2.020071e-03	k: 2605	n:1340000
Cons ci ratio: 1.484419e-01	ci left: 4.815359e-04	ci right 5.594553e-04	k: 696	n:1340000
KS ci ratio: 1.468484e-02	ci left: 5.012166e-02	ci right 5.086386e-02	k: 67659	n:1340000
DACH1   1340000 perm   1065 sec   (1259 perm/sec)   p_kst 5.049179e-02   p_cons 5.194030e-04   p_joint 1.944030e-03

Joint ci ratio: 7.661177e-02	ci left: 1.861387e-03	ci right 2.010392e-03	k: 2612	n:1350000
Cons ci ratio: 1.481236e-01	ci left: 4.801087e-04	ci right 5.576158e-04	k: 699	n:1350000
KS ci ratio: 1.463136e-02	ci left: 5.011645e-02	ci right 5.085585e-02	k: 68155	n:1350000
DACH1   1350000 perm   1078 sec   (1252 perm/sec)   p_kst 5.048519e-02   p_cons 5.177778e-04   p_joint 1.934815e-03

Joint ci ratio: 7.634929e-02	ci left: 1.860683e-03	ci right 2.009098e-03	k: 2630	n:1360000
Cons ci ratio: 1.473884e-01	ci left: 4.815353e-04	ci right 5.588529e-04	k: 706	n:1360000
KS ci ratio: 1.457823e-02	ci left: 5.011279e-02	ci right 5.084942e-02	k: 68653	n:1360000
DACH1   1360000 perm   1092 sec   (1246 perm/sec)   p_kst 5.048015e-02   p_cons 5.191176e-04   p_joint 1.933824e-03

Joint ci ratio: 7.594599e-02	ci left: 1.867150e-03	ci right 2.015260e-03	k: 2658	n:1370000
Cons ci ratio: 1.463567e-01	ci left: 4.850516e-04	ci right 5.623409e-04	k: 716	n:1370000
KS ci ratio: 1.452480e-02	ci left: 5.011500e-02	ci right 5.084895e-02	k: 69159	n:1370000
DACH1   1370000 perm   1105 sec   (1239 perm/sec)   p_kst 5.048102e-02   p_cons 5.226277e-04   p_joint 1.940146e-03

Joint ci ratio: 7.604689e-02	ci left: 1.848643e-03	ci right 1.995489e-03	k: 2651	n:1380000
Cons ci ratio: 1.460516e-01	ci left: 4.836311e-04	ci right 5.605194e-04	k: 719	n:1380000
KS ci ratio: 1.447096e-02	ci left: 5.012368e-02	ci right 5.085502e-02	k: 69674	n:1380000
DACH1   1380000 perm   1119 sec   (1233 perm/sec)   p_kst 5.048841e-02   p_cons 5.210145e-04   p_joint 1.921014e-03

Joint ci ratio: 7.563421e-02	ci left: 1.855812e-03	ci right 2.002391e-03	k: 2680	n:1390000
Cons ci ratio: 1.452468e-01	ci left: 4.856974e-04	ci right 5.624518e-04	k: 727	n:1390000
KS ci ratio: 1.442010e-02	ci left: 5.011647e-02	ci right 5.084511e-02	k: 70167	n:1390000
DACH1   1390000 perm   1133 sec   (1227 perm/sec)   p_kst 5.047986e-02   p_cons 5.230216e-04   p_joint 1.928058e-03

Joint ci ratio: 7.571967e-02	ci left: 1.838350e-03	ci right 1.983722e-03	k: 2674	n:1400000
Cons ci ratio: 1.446519e-01	ci left: 4.863584e-04	ci right 5.628753e-04	k: 733	n:1400000
KS ci ratio: 1.436870e-02	ci left: 5.011649e-02	ci right 5.084251e-02	k: 70670	n:1400000
DACH1   1400000 perm   1147 sec   (1221 perm/sec)   p_kst 5.047857e-02   p_cons 5.235714e-04   p_joint 1.910000e-03

Joint ci ratio: 7.546622e-02	ci left: 1.837837e-03	ci right 1.982661e-03	k: 2692	n:1410000
Cons ci ratio: 1.443573e-01	ci left: 4.849598e-04	ci right 5.610878e-04	k: 736	n:1410000
KS ci ratio: 1.431478e-02	ci left: 5.013701e-02	ci right 5.086058e-02	k: 71202	n:1410000
DACH1   1410000 perm   1161 sec   (1215 perm/sec)   p_kst 5.049787e-02   p_cons 5.219858e-04   p_joint 1.909220e-03

Joint ci ratio: 7.525703e-02	ci left: 1.835259e-03	ci right 1.979461e-03	k: 2707	n:1420000
Cons ci ratio: 1.442596e-01	ci left: 4.822233e-04	ci right 5.578662e-04	k: 737	n:1420000
KS ci ratio: 1.426753e-02	ci left: 5.011654e-02	ci right 5.083741e-02	k: 71676	n:1420000
DACH1   1420000 perm   1175 sec   (1209 perm/sec)   p_kst 5.047606e-02   p_cons 5.190141e-04   p_joint 1.906338e-03

Joint ci ratio: 7.521580e-02	ci left: 1.824483e-03	ci right 1.967756e-03	k: 2710	n:1430000
Cons ci ratio: 1.440647e-01	ci left: 4.801993e-04	ci right 5.554141e-04	k: 739	n:1430000
KS ci ratio: 1.421847e-02	ci left: 5.011169e-02	ci right 5.082999e-02	k: 72172	n:1430000
DACH1   1430000 perm   1189 sec   (1203 perm/sec)   p_kst 5.046993e-02   p_cons 5.167832e-04   p_joint 1.895105e-03

Joint ci ratio: 7.487122e-02	ci left: 1.828848e-03	ci right 1.971778e-03	k: 2735	n:1440000
Cons ci ratio: 1.432921e-01	ci left: 4.822204e-04	ci right 5.573122e-04	k: 747	n:1440000
KS ci ratio: 1.416498e-02	ci left: 5.014014e-02	ci right 5.085612e-02	k: 72716	n:1440000
DACH1   1440000 perm   1203 sec   (1197 perm/sec)   p_kst 5.049722e-02   p_cons 5.187500e-04   p_joint 1.899306e-03

Joint ci ratio: 7.163870e-02	ci left: 1.986852e-03	ci right 2.135148e-03	k: 2987	n:1450000
Cons ci ratio: 1.428156e-01	ci left: 4.822196e-04	ci right 5.570402e-04	k: 752	n:1450000
KS ci ratio: 1.411351e-02	ci left: 5.015857e-02	ci right 5.087219e-02	k: 73246	n:1450000
DACH1   1450000 perm   1217 sec   (1191 perm/sec)   p_kst 5.051448e-02   p_cons 5.186207e-04   p_joint 2.060000e-03

Joint ci ratio: 7.147162e-02	ci left: 1.982661e-03	ci right 2.130284e-03	k: 3001	n:1460000
Cons ci ratio: 1.425321e-01	ci left: 4.808982e-04	ci right 5.553530e-04	k: 755	n:1460000
KS ci ratio: 1.406611e-02	ci left: 5.015287e-02	ci right 5.086399e-02	k: 73741	n:1460000
DACH1   1460000 perm   1232 sec   (1185 perm/sec)   p_kst 5.050753e-02   p_cons 5.171233e-04   p_joint 2.055479e-03

Joint ci ratio: 7.121113e-02	ci left: 1.983873e-03	ci right 2.131025e-03	k: 3023	n:1470000
Cons ci ratio: 1.416910e-01	ci left: 4.835316e-04	ci right 5.579150e-04	k: 764	n:1470000
KS ci ratio: 1.401680e-02	ci left: 5.016351e-02	ci right 5.087227e-02	k: 74260	n:1470000
DACH1   1470000 perm   1246 sec   (1179 perm/sec)   p_kst 5.051701e-02   p_cons 5.197279e-04   p_joint 2.056463e-03

Joint ci ratio: 7.103530e-02	ci left: 1.980423e-03	ci right 2.126942e-03	k: 3038	n:1480000
Cons ci ratio: 1.415063e-01	ci left: 4.815679e-04	ci right 5.555446e-04	k: 766	n:1480000
KS ci ratio: 1.397244e-02	ci left: 5.014372e-02	ci right 5.084994e-02	k: 74734	n:1480000
DACH1   1480000 perm   1261 sec   (1174 perm/sec)   p_kst 5.049595e-02   p_cons 5.175676e-04   p_joint 2.052703e-03

Joint ci ratio: 7.088403e-02	ci left: 1.975701e-03	ci right 2.121547e-03	k: 3051	n:1490000
Cons ci ratio: 1.412304e-01	ci left: 4.802781e-04	ci right 5.539007e-04	k: 769	n:1490000
KS ci ratio: 1.392810e-02	ci left: 5.012686e-02	ci right 5.083059e-02	k: 75212	n:1490000
DACH1   1490000 perm   1275 sec   (1168 perm/sec)   p_kst 5.047785e-02   p_cons 5.161074e-04   p_joint 2.047651e-03

Joint ci ratio: 7.068752e-02	ci left: 1.973663e-03	ci right 2.118937e-03	k: 3068	n:1500000
Cons ci ratio: 1.405927e-01	ci left: 4.815784e-04	ci right 5.550391e-04	k: 776	n:1500000
KS ci ratio: 1.387993e-02	ci left: 5.013948e-02	ci right 5.084093e-02	k: 75734	n:1500000
DACH1   1500000 perm   1290 sec   (1163 perm/sec)   p_kst 5.048933e-02   p_cons 5.173333e-04   p_joint 2.045333e-03

Joint ci ratio: 7.049263e-02	ci left: 1.971652e-03	ci right 2.116362e-03	k: 3085	n:1510000
Cons ci ratio: 1.404123e-01	ci left: 4.796671e-04	ci right 5.527344e-04	k: 778	n:1510000
KS ci ratio: 1.383446e-02	ci left: 5.013675e-02	ci right 5.083584e-02	k: 76233	n:1510000
DACH1   1510000 perm   1305 sec   (1157 perm/sec)   p_kst 5.048543e-02   p_cons 5.152318e-04   p_joint 2.043046e-03

Joint ci ratio: 7.080415e-02	ci left: 1.941230e-03	ci right 2.084363e-03	k: 3058	n:1520000
Cons ci ratio: 1.400532e-01	ci left: 4.790506e-04	ci right 5.518219e-04	k: 782	n:1520000
KS ci ratio: 1.378754e-02	ci left: 5.014717e-02	ci right 5.084402e-02	k: 76752	n:1520000
DACH1   1520000 perm   1320 sec   (1152 perm/sec)   p_kst 5.049474e-02   p_cons 5.144737e-04   p_joint 2.011842e-03

Joint ci ratio: 7.057382e-02	ci left: 1.941383e-03	ci right 2.084042e-03	k: 3078	n:1530000
Cons ci ratio: 1.395197e-01	ci left: 4.797040e-04	ci right 5.522738e-04	k: 788	n:1530000
KS ci ratio: 1.374250e-02	ci left: 5.014769e-02	ci right 5.084225e-02	k: 77256	n:1530000
DACH1   1530000 perm   1335 sec   (1146 perm/sec)   p_kst 5.049412e-02   p_cons 5.150327e-04   p_joint 2.011765e-03

Joint ci ratio: 7.037987e-02	ci left: 1.939621e-03	ci right 2.081743e-03	k: 3095	n:1540000
Cons ci ratio: 1.390797e-01	ci left: 4.797226e-04	ci right 5.520474e-04	k: 793	n:1540000
KS ci ratio: 1.369548e-02	ci left: 5.016503e-02	ci right 5.085744e-02	k: 77786	n:1540000
DACH1   1540000 perm   1350 sec   (1141 perm/sec)   p_kst 5.051039e-02   p_cons 5.149351e-04   p_joint 2.009740e-03

Joint ci ratio: 7.013109e-02	ci left: 1.941051e-03	ci right 2.082755e-03	k: 3117	n:1550000
Cons ci ratio: 1.386438e-01	ci left: 4.797414e-04	ci right 5.518236e-04	k: 798	n:1550000
KS ci ratio: 1.365005e-02	ci left: 5.017444e-02	ci right 5.086466e-02	k: 78304	n:1550000
DACH1   1550000 perm   1365 sec   (1136 perm/sec)   p_kst 5.051871e-02   p_cons 5.148387e-04   p_joint 2.010968e-03

Joint ci ratio: 6.991841e-02	ci left: 1.940575e-03	ci right 2.081797e-03	k: 3136	n:1560000
Cons ci ratio: 1.381261e-01	ci left: 4.803791e-04	ci right 5.522655e-04	k: 804	n:1560000
KS ci ratio: 1.360870e-02	ci left: 5.015817e-02	ci right 5.084606e-02	k: 78782	n:1560000
DACH1   1560000 perm   1380 sec   (1131 perm/sec)   p_kst 5.050128e-02   p_cons 5.153846e-04   p_joint 2.010256e-03

Joint ci ratio: 6.961930e-02	ci left: 1.945112e-03	ci right 2.086034e-03	k: 3163	n:1570000
Cons ci ratio: 1.375294e-01	ci left: 4.816243e-04	ci right 5.533601e-04	k: 811	n:1570000
KS ci ratio: 1.356566e-02	ci left: 5.015672e-02	ci right 5.084239e-02	k: 79283	n:1570000
DACH1   1570000 perm   1395 sec   (1125 perm/sec)   p_kst 5.049873e-02   p_cons 5.165605e-04   p_joint 2.014650e-03

Joint ci ratio: 6.932399e-02	ci left: 1.949593e-03	ci right 2.090217e-03	k: 3190	n:1580000
Cons ci ratio: 1.367734e-01	ci left: 4.840768e-04	ci right 5.557493e-04	k: 820	n:1580000
KS ci ratio: 1.352194e-02	ci left: 5.016285e-02	ci right 5.084639e-02	k: 79796	n:1580000
DACH1   1580000 perm   1410 sec   (1120 perm/sec)   p_kst 5.050380e-02   p_cons 5.189873e-04   p_joint 2.018987e-03

Joint ci ratio: 6.906467e-02	ci left: 1.952165e-03	ci right 2.092426e-03	k: 3214	n:1590000
Cons ci ratio: 1.363588e-01	ci left: 4.840695e-04	ci right 5.555061e-04	k: 825	n:1590000
KS ci ratio: 1.348360e-02	ci left: 5.013381e-02	ci right 5.081500e-02	k: 80253	n:1590000
DACH1   1590000 perm   1426 sec   (1115 perm/sec)   p_kst 5.047358e-02   p_cons 5.188679e-04   p_joint 2.021384e-03

Joint ci ratio: 6.876570e-02	ci left: 1.957162e-03	ci right 2.097150e-03	k: 3242	n:1600000
Cons ci ratio: 1.358662e-01	ci left: 4.846664e-04	ci right 5.559118e-04	k: 831	n:1600000
KS ci ratio: 1.343980e-02	ci left: 5.014625e-02	ci right 5.082538e-02	k: 80776	n:1600000
DACH1   1600000 perm   1441 sec   (1110 perm/sec)   p_kst 5.048500e-02   p_cons 5.193750e-04   p_joint 2.026250e-03

Joint ci ratio: 6.842867e-02	ci left: 1.964541e-03	ci right 2.104340e-03	k: 3274	n:1610000
Cons ci ratio: 1.353789e-01	ci left: 4.852563e-04	ci right 5.563120e-04	k: 837	n:1610000
KS ci ratio: 1.339929e-02	ci left: 5.013811e-02	ci right 5.081506e-02	k: 81266	n:1610000
DACH1   1610000 perm   1457 sec   (1105 perm/sec)   p_kst 5.047578e-02   p_cons 5.198758e-04   p_joint 2.033540e-03

Joint ci ratio: 6.829342e-02	ci left: 1.960302e-03	ci right 2.099513e-03	k: 3287	n:1620000
Cons ci ratio: 1.349768e-01	ci left: 4.852430e-04	ci right 5.560687e-04	k: 842	n:1620000
KS ci ratio: 1.336017e-02	ci left: 5.012269e-02	ci right 5.079744e-02	k: 81744	n:1620000
DACH1   1620000 perm   1472 sec   (1100 perm/sec)   p_kst 5.045926e-02   p_cons 5.197531e-04   p_joint 2.029012e-03

Joint ci ratio: 6.801459e-02	ci left: 1.964558e-03	ci right 2.103479e-03	k: 3314	n:1630000
Cons ci ratio: 1.344990e-01	ci left: 4.858229e-04	ci right 5.564622e-04	k: 848	n:1630000
KS ci ratio: 1.331705e-02	ci left: 5.013865e-02	ci right 5.081142e-02	k: 82273	n:1630000
DACH1   1630000 perm   1488 sec   (1096 perm/sec)   p_kst 5.047423e-02   p_cons 5.202454e-04   p_joint 2.033129e-03

Joint ci ratio: 6.791245e-02	ci left: 1.958572e-03	ci right 2.096854e-03	k: 3324	n:1640000
Cons ci ratio: 1.341833e-01	ci left: 4.852176e-04	ci right 5.555901e-04	k: 852	n:1640000
KS ci ratio: 1.327873e-02	ci left: 5.012281e-02	ci right 5.079342e-02	k: 82750	n:1640000
DACH1   1640000 perm   1504 sec   (1091 perm/sec)   p_kst 5.045732e-02   p_cons 5.195122e-04   p_joint 2.026829e-03

Joint ci ratio: 6.777006e-02	ci left: 1.955043e-03	ci right 2.092775e-03	k: 3338	n:1650000
Cons ci ratio: 1.341049e-01	ci left: 4.828626e-04	ci right 5.528493e-04	k: 853	n:1650000
KS ci ratio: 1.324099e-02	ci left: 5.010535e-02	ci right 5.077381e-02	k: 83224	n:1650000
DACH1   1650000 perm   1520 sec   (1086 perm/sec)   p_kst 5.043879e-02   p_cons 5.169697e-04   p_joint 2.023030e-03

Joint ci ratio: 6.781118e-02	ci left: 1.940897e-03	ci right 2.077718e-03	k: 3334	n:1660000
Cons ci ratio: 1.337140e-01	ci left: 4.828649e-04	ci right 5.526318e-04	k: 858	n:1660000
KS ci ratio: 1.320299e-02	ci left: 5.009231e-02	ci right 5.075866e-02	k: 83705	n:1660000
DACH1   1660000 perm   1536 sec   (1081 perm/sec)   p_kst 5.042470e-02   p_cons 5.168675e-04   p_joint 2.008434e-03

Joint ci ratio: 6.755834e-02	ci left: 1.943991e-03	ci right 2.080500e-03	k: 3359	n:1670000
Cons ci ratio: 1.334812e-01	ci left: 4.817099e-04	ci right 5.511791e-04	k: 861	n:1670000
KS ci ratio: 1.316153e-02	ci left: 5.010688e-02	ci right 5.077132e-02	k: 84232	n:1670000
DACH1   1670000 perm   1552 sec   (1076 perm/sec)   p_kst 5.043832e-02   p_cons 5.155689e-04   p_joint 2.011377e-03

Joint ci ratio: 6.739814e-02	ci left: 1.941783e-03	ci right 2.077800e-03	k: 3375	n:1680000
Cons ci ratio: 1.332496e-01	ci left: 4.805687e-04	ci right 5.497435e-04	k: 864	n:1680000
KS ci ratio: 1.312461e-02	ci left: 5.009103e-02	ci right 5.075338e-02	k: 84708	n:1680000
DACH1   1680000 perm   1568 sec   (1072 perm/sec)   p_kst 5.042143e-02   p_cons 5.142857e-04   p_joint 2.008929e-03

Joint ci ratio: 6.720930e-02	ci left: 1.941346e-03	ci right 2.076937e-03	k: 3394	n:1690000
Cons ci ratio: 1.330193e-01	ci left: 4.794411e-04	ci right 5.483249e-04	k: 867	n:1690000
KS ci ratio: 1.308493e-02	ci left: 5.009778e-02	ci right 5.075820e-02	k: 85222	n:1690000
DACH1   1690000 perm   1584 sec   (1067 perm/sec)   p_kst 5.042722e-02   p_cons 5.130178e-04   p_joint 2.008284e-03

Joint ci ratio: 6.708113e-02	ci left: 1.937445e-03	ci right 2.072496e-03	k: 3407	n:1700000
Cons ci ratio: 1.327139e-01	ci left: 4.788956e-04	ci right 5.475305e-04	k: 871	n:1700000
KS ci ratio: 1.304617e-02	ci left: 5.010035e-02	ci right 5.075883e-02	k: 85729	n:1700000
DACH1   1700000 perm   1600 sec   (1062 perm/sec)   p_kst 5.042882e-02   p_cons 5.123529e-04   p_joint 2.004118e-03

Joint ci ratio: 6.678762e-02	ci left: 1.943366e-03	ci right 2.078213e-03	k: 3437	n:1710000
Cons ci ratio: 1.322596e-01	ci left: 4.794875e-04	ci right 5.479536e-04	k: 877	n:1710000
KS ci ratio: 1.300609e-02	ci left: 5.011513e-02	ci right 5.077177e-02	k: 86257	n:1710000
DACH1   1710000 perm   1617 sec   (1058 perm/sec)   p_kst 5.044269e-02   p_cons 5.128655e-04   p_joint 2.009942e-03

Joint ci ratio: 6.665217e-02	ci left: 1.940071e-03	ci right 2.074406e-03	k: 3451	n:1720000
Cons ci ratio: 1.316610e-01	ci left: 4.811974e-04	ci right 5.495724e-04	k: 885	n:1720000
KS ci ratio: 1.296999e-02	ci left: 5.010309e-02	ci right 5.075773e-02	k: 86739	n:1720000
DACH1   1720000 perm   1633 sec   (1053 perm/sec)   p_kst 5.042965e-02   p_cons 5.145349e-04   p_joint 2.006395e-03

Joint ci ratio: 6.771231e-02	ci left: 1.868043e-03	ci right 1.999529e-03	k: 3344	n:1730000
Cons ci ratio: 1.315128e-01	ci left: 4.795339e-04	ci right 5.475898e-04	k: 887	n:1730000
KS ci ratio: 1.293310e-02	ci left: 5.009925e-02	ci right 5.075197e-02	k: 87235	n:1730000
DACH1   1730000 perm   1650 sec   (1049 perm/sec)   p_kst 5.042486e-02   p_cons 5.127168e-04   p_joint 1.932948e-03

Joint ci ratio: 6.786531e-02	ci left: 1.848832e-03	ci right 1.979271e-03	k: 3329	n:1740000
Cons ci ratio: 1.310707e-01	ci left: 4.801130e-04	ci right 5.480042e-04	k: 893	n:1740000
KS ci ratio: 1.289582e-02	ci left: 5.010061e-02	ci right 5.075146e-02	k: 87740	n:1740000
DACH1   1740000 perm   1666 sec   (1044 perm/sec)   p_kst 5.042529e-02   p_cons 5.132184e-04   p_joint 1.913218e-03

Joint ci ratio: 6.766241e-02	ci left: 1.849502e-03	ci right 1.979583e-03	k: 3349	n:1750000
Cons ci ratio: 1.307057e-01	ci left: 4.801331e-04	ci right 5.478234e-04	k: 898	n:1750000
KS ci ratio: 1.285780e-02	ci left: 5.010994e-02	ci right 5.075897e-02	k: 88259	n:1750000
DACH1   1750000 perm   1683 sec   (1040 perm/sec)   p_kst 5.043371e-02   p_cons 5.131429e-04   p_joint 1.913714e-03

Joint ci ratio: 6.764255e-02	ci left: 1.840111e-03	ci right 1.969492e-03	k: 3351	n:1760000
Cons ci ratio: 1.304882e-01	ci left: 4.790539e-04	ci right 5.464710e-04	k: 901	n:1760000
KS ci ratio: 1.281828e-02	ci left: 5.013276e-02	ci right 5.078008e-02	k: 88802	n:1760000
DACH1   1760000 perm   1699 sec   (1036 perm/sec)   p_kst 5.045568e-02   p_cons 5.119318e-04   p_joint 1.903977e-03

Joint ci ratio: 6.739159e-02	ci left: 1.843600e-03	ci right 1.972727e-03	k: 3376	n:1770000
Cons ci ratio: 1.298419e-01	ci left: 4.812666e-04	ci right 5.486338e-04	k: 910	n:1770000
KS ci ratio: 1.278017e-02	ci left: 5.014744e-02	ci right 5.079301e-02	k: 89331	n:1770000
DACH1   1770000 perm   1716 sec   (1031 perm/sec)   p_kst 5.046949e-02   p_cons 5.141243e-04   p_joint 1.907345e-03

Joint ci ratio: 6.719290e-02	ci left: 1.844290e-03	ci right 1.973069e-03	k: 3396	n:1780000
Cons ci ratio: 1.295579e-01	ci left: 4.807371e-04	ci right 5.478716e-04	k: 914	n:1780000
KS ci ratio: 1.274450e-02	ci left: 5.014628e-02	ci right 5.079002e-02	k: 89832	n:1780000
DACH1   1780000 perm   1733 sec   (1027 perm/sec)   p_kst 5.046742e-02   p_cons 5.134831e-04   p_joint 1.907865e-03

Joint ci ratio: 6.707466e-02	ci left: 1.840578e-03	ci right 1.968863e-03	k: 3408	n:1790000
Cons ci ratio: 1.294873e-01	ci left: 4.785920e-04	ci right 5.453877e-04	k: 915	n:1790000
KS ci ratio: 1.271283e-02	ci left: 5.011728e-02	ci right 5.075903e-02	k: 90283	n:1790000
DACH1   1790000 perm   1750 sec   (1023 perm/sec)   p_kst 5.043743e-02   p_cons 5.111732e-04   p_joint 1.903911e-03

Joint ci ratio: 6.759350e-02	ci left: 1.801949e-03	ci right 1.928551e-03	k: 3356	n:1800000
Cons ci ratio: 1.292055e-01	ci left: 4.780834e-04	ci right 5.446519e-04	k: 919	n:1800000
KS ci ratio: 1.267977e-02	ci left: 5.010079e-02	ci right 5.074065e-02	k: 90756	n:1800000
DACH1   1800000 perm   1767 sec   (1018 perm/sec)   p_kst 5.042000e-02   p_cons 5.105556e-04   p_joint 1.864444e-03

Joint ci ratio: 6.773550e-02	ci left: 1.784389e-03	ci right 1.910031e-03	k: 3342	n:1810000
Cons ci ratio: 1.290654e-01	ci left: 4.765113e-04	ci right 5.427834e-04	k: 921	n:1810000
KS ci ratio: 1.264151e-02	ci left: 5.012580e-02	ci right 5.076404e-02	k: 91304	n:1810000
DACH1   1810000 perm   1785 sec   (1014 perm/sec)   p_kst 5.044420e-02   p_cons 5.088398e-04   p_joint 1.846409e-03

Joint ci ratio: 6.755388e-02	ci left: 1.784307e-03	ci right 1.909594e-03	k: 3360	n:1820000
Cons ci ratio: 1.287864e-01	ci left: 4.760200e-04	ci right 5.420697e-04	k: 925	n:1820000
KS ci ratio: 1.260611e-02	ci left: 5.013136e-02	ci right 5.076787e-02	k: 91817	n:1820000
DACH1   1820000 perm   1802 sec   (1010 perm/sec)   p_kst 5.044890e-02   p_cons 5.082418e-04   p_joint 1.846154e-03

Joint ci ratio: 6.740370e-02	ci left: 1.782615e-03	ci right 1.907494e-03	k: 3375	n:1830000
Cons ci ratio: 1.285092e-01	ci left: 4.755343e-04	ci right 5.413637e-04	k: 929	n:1830000
KS ci ratio: 1.257108e-02	ci left: 5.013632e-02	ci right 5.077111e-02	k: 92329	n:1830000
DACH1   1830000 perm   1819 sec   (1006 perm/sec)   p_kst 5.045301e-02   p_cons 5.076503e-04   p_joint 1.844262e-03

Joint ci ratio: 6.723466e-02	ci left: 1.782011e-03	ci right 1.906522e-03	k: 3392	n:1840000
Cons ci ratio: 1.282337e-01	ci left: 4.750540e-04	ci right 5.406652e-04	k: 933	n:1840000
KS ci ratio: 1.253549e-02	ci left: 5.014773e-02	ci right 5.078086e-02	k: 92853	n:1840000
DACH1   1840000 perm   1836 sec   (1002 perm/sec)   p_kst 5.046359e-02   p_cons 5.070652e-04   p_joint 1.843478e-03

Joint ci ratio: 6.571937e-02	ci left: 1.856367e-03	ci right 1.983039e-03	k: 3550	n:1850000
Cons ci ratio: 1.278919e-01	ci left: 4.751022e-04	ci right 5.405319e-04	k: 938	n:1850000
KS ci ratio: 1.250225e-02	ci left: 5.014339e-02	ci right 5.077477e-02	k: 93348	n:1850000
DACH1   1850000 perm   1854 sec   (998 perm/sec)   p_kst 5.045838e-02   p_cons 5.070270e-04   p_joint 1.918919e-03

Joint ci ratio: 6.580331e-02	ci left: 1.841627e-03	ci right 1.967459e-03	k: 3541	n:1860000
Cons ci ratio: 1.274852e-01	ci left: 4.756707e-04	ci right 5.409546e-04	k: 944	n:1860000
KS ci ratio: 1.247073e-02	ci left: 5.012785e-02	ci right 5.075742e-02	k: 93822	n:1860000
DACH1   1860000 perm   1871 sec   (994 perm/sec)   p_kst 5.044194e-02   p_cons 5.075269e-04   p_joint 1.903763e-03

Joint ci ratio: 6.560907e-02	ci left: 1.842824e-03	ci right 1.968352e-03	k: 3562	n:1870000
Cons ci ratio: 1.272163e-01	ci left: 4.751979e-04	ci right 5.402690e-04	k: 948	n:1870000
KS ci ratio: 1.243939e-02	ci left: 5.011300e-02	ci right 5.074080e-02	k: 94297	n:1870000
DACH1   1870000 perm   1889 sec   (990 perm/sec)   p_kst 5.042620e-02   p_cons 5.069519e-04   p_joint 1.904813e-03

Joint ci ratio: 6.862787e-02	ci left: 1.672981e-03	ci right 1.792392e-03	k: 3256	n:1880000
Cons ci ratio: 1.270157e-01	ci left: 4.742152e-04	ci right 5.390417e-04	k: 951	n:1880000
KS ci ratio: 1.240566e-02	ci left: 5.011847e-02	ci right 5.074462e-02	k: 94810	n:1880000
DACH1   1880000 perm   1907 sec   (986 perm/sec)   p_kst 5.043085e-02   p_cons 5.058511e-04   p_joint 1.731915e-03

Joint ci ratio: 6.844948e-02	ci left: 1.672970e-03	ci right 1.792058e-03	k: 3273	n:1890000
Cons ci ratio: 1.266173e-01	ci left: 4.747800e-04	ci right 5.394649e-04	k: 957	n:1890000
KS ci ratio: 1.237370e-02	ci left: 5.011227e-02	ci right 5.073672e-02	k: 95301	n:1890000
DACH1   1890000 perm   1925 sec   (982 perm/sec)   p_kst 5.042381e-02   p_cons 5.063492e-04   p_joint 1.731746e-03

Joint ci ratio: 6.815845e-02	ci left: 1.678650e-03	ci right 1.797614e-03	k: 3301	n:1900000
Cons ci ratio: 1.259614e-01	ci left: 4.773781e-04	ci right 5.420549e-04	k: 967	n:1900000
KS ci ratio: 1.234193e-02	ci left: 5.010667e-02	ci right 5.072944e-02	k: 95793	n:1900000
DACH1   1900000 perm   1943 sec   (978 perm/sec)   p_kst 5.041737e-02   p_cons 5.089474e-04   p_joint 1.737368e-03

Joint ci ratio: 6.806590e-02	ci left: 1.674493e-03	ci right 1.792995e-03	k: 3310	n:1910000
Cons ci ratio: 1.257020e-01	ci left: 4.769071e-04	ci right 5.413770e-04	k: 971	n:1910000
KS ci ratio: 1.231040e-02	ci left: 5.010113e-02	ci right 5.072222e-02	k: 96285	n:1910000
DACH1   1910000 perm   1961 sec   (974 perm/sec)   p_kst 5.041099e-02   p_cons 5.083770e-04   p_joint 1.732984e-03

Joint ci ratio: 6.788162e-02	ci left: 1.674987e-03	ci right 1.793191e-03	k: 3328	n:1920000
Cons ci ratio: 1.255730e-01	ci left: 4.754321e-04	ci right 5.396318e-04	k: 973	n:1920000
KS ci ratio: 1.227964e-02	ci left: 5.009149e-02	ci right 5.071091e-02	k: 96769	n:1920000
DACH1   1920000 perm   1979 sec   (970 perm/sec)   p_kst 5.040052e-02   p_cons 5.067708e-04   p_joint 1.733333e-03

Joint ci ratio: 6.772925e-02	ci left: 1.673949e-03	ci right 1.791803e-03	k: 3343	n:1930000
Cons ci ratio: 1.254444e-01	ci left: 4.739724e-04	ci right 5.379046e-04	k: 975	n:1930000
KS ci ratio: 1.225057e-02	ci left: 5.007059e-02	ci right 5.068827e-02	k: 97231	n:1930000
DACH1   1930000 perm   1997 sec   (966 perm/sec)   p_kst 5.037876e-02   p_cons 5.051813e-04   p_joint 1.732124e-03

Joint ci ratio: 6.757789e-02	ci left: 1.672921e-03	ci right 1.790430e-03	k: 3358	n:1940000
Cons ci ratio: 1.250605e-01	ci left: 4.745252e-04	ci right 5.383215e-04	k: 981	n:1940000
KS ci ratio: 1.221849e-02	ci left: 5.007509e-02	ci right 5.069120e-02	k: 97742	n:1940000
DACH1   1940000 perm   2016 sec   (963 perm/sec)   p_kst 5.038247e-02   p_cons 5.056701e-04   p_joint 1.730928e-03

Joint ci ratio: 6.746762e-02	ci left: 1.669888e-03	ci right 1.786985e-03	k: 3369	n:1950000
Cons ci ratio: 1.248066e-01	ci left: 4.740789e-04	ci right 5.376762e-04	k: 985	n:1950000
KS ci ratio: 1.218626e-02	ci left: 5.008262e-02	ci right 5.069718e-02	k: 98259	n:1950000
DACH1   1950000 perm   2034 sec   (959 perm/sec)   p_kst 5.038923e-02   p_cons 5.051282e-04   p_joint 1.727692e-03

Joint ci ratio: 6.883170e-02	ci left: 1.595166e-03	ci right 1.709375e-03	k: 3237	n:1960000
Cons ci ratio: 1.246173e-01	ci left: 4.731429e-04	ci right 5.365113e-04	k: 988	n:1960000
KS ci ratio: 1.215434e-02	ci left: 5.008956e-02	ci right 5.070259e-02	k: 98775	n:1960000
DACH1   1960000 perm   2053 sec   (955 perm/sec)   p_kst 5.039541e-02   p_cons 5.040816e-04   p_joint 1.651531e-03

Joint ci ratio: 6.857789e-02	ci left: 1.599043e-03	ci right 1.713090e-03	k: 3261	n:1970000
Cons ci ratio: 1.244915e-01	ci left: 4.717248e-04	ci right 5.348348e-04	k: 990	n:1970000
KS ci ratio: 1.212178e-02	ci left: 5.010352e-02	ci right 5.071506e-02	k: 99305	n:1970000
DACH1   1970000 perm   2071 sec   (951 perm/sec)   p_kst 5.040863e-02   p_cons 5.025381e-04   p_joint 1.655330e-03

Joint ci ratio: 6.844171e-02	ci left: 1.597420e-03	ci right 1.711116e-03	k: 3274	n:1980000
Cons ci ratio: 1.244289e-01	ci left: 4.698316e-04	ci right 5.326544e-04	k: 991	n:1980000
KS ci ratio: 1.209069e-02	ci left: 5.010777e-02	ci right 5.071779e-02	k: 99816	n:1980000
DACH1   1980000 perm   2090 sec   (947 perm/sec)   p_kst 5.041212e-02   p_cons 5.005051e-04   p_joint 1.653535e-03

Joint ci ratio: 6.931669e-02	ci left: 1.548895e-03	ci right 1.660604e-03	k: 3192	n:1990000
Cons ci ratio: 1.240543e-01	ci left: 4.703920e-04	ci right 5.330865e-04	k: 997	n:1990000
KS ci ratio: 1.206041e-02	ci left: 5.010747e-02	ci right 5.071595e-02	k: 100318	n:1990000
DACH1   1990000 perm   2109 sec   (944 perm/sec)   p_kst 5.041106e-02   p_cons 5.010050e-04   p_joint 1.604020e-03

Joint ci ratio: 6.910054e-02	ci left: 1.550977e-03	ci right 1.662474e-03	k: 3212	n:2000000
Cons ci ratio: 1.239303e-01	ci left: 4.690090e-04	ci right 5.314521e-04	k: 999	n:2000000
KS ci ratio: 1.203035e-02	ci left: 5.010718e-02	ci right 5.071412e-02	k: 100820	n:2000000
DACH1   2000000 perm   2127 sec   (940 perm/sec)   p_kst 5.041000e-02   p_cons 4.995000e-04   p_joint 1.606000e-03

Joint ci ratio: 6.886508e-02	ci left: 1.554018e-03	ci right 1.665337e-03	k: 3234	n:2010000
Cons ci ratio: 1.236216e-01	ci left: 4.690862e-04	ci right 5.313726e-04	k: 1004	n:2010000
KS ci ratio: 1.199965e-02	ci left: 5.011384e-02	ci right 5.071930e-02	k: 101336	n:2010000
DACH1   2010000 perm   2146 sec   (937 perm/sec)   p_kst 5.041592e-02   p_cons 4.995025e-04   p_joint 1.608955e-03

Joint ci ratio: 6.865312e-02	ci left: 1.556055e-03	ci right 1.667164e-03	k: 3254	n:2020000
Cons ci ratio: 1.233763e-01	ci left: 4.686830e-04	ci right 5.307834e-04	k: 1008	n:2020000
KS ci ratio: 1.196850e-02	ci left: 5.012586e-02	ci right 5.072989e-02	k: 101863	n:2020000
DACH1   2020000 perm   2165 sec   (933 perm/sec)   p_kst 5.042723e-02   p_cons 4.990099e-04   p_joint 1.610891e-03

Joint ci ratio: 6.847452e-02	ci left: 1.556621e-03	ci right 1.667469e-03	k: 3271	n:2030000
Cons ci ratio: 1.230111e-01	ci left: 4.692388e-04	ci right 5.312154e-04	k: 1014	n:2030000
KS ci ratio: 1.193838e-02	ci left: 5.013138e-02	ci right 5.073394e-02	k: 102377	n:2030000
DACH1   2030000 perm   2184 sec   (929 perm/sec)   p_kst 5.043202e-02   p_cons 4.995074e-04   p_joint 1.611330e-03

Joint ci ratio: 6.892995e-02	ci left: 1.528273e-03	ci right 1.637855e-03	k: 3228	n:2040000
Cons ci ratio: 1.227695e-01	ci left: 4.688391e-04	ci right 5.306324e-04	k: 1018	n:2040000
KS ci ratio: 1.191051e-02	ci left: 5.012072e-02	ci right 5.072174e-02	k: 102858	n:2040000
DACH1   2040000 perm   2203 sec   (926 perm/sec)   p_kst 5.042059e-02   p_cons 4.990196e-04   p_joint 1.582353e-03

Joint ci ratio: 6.875980e-02	ci left: 1.528489e-03	ci right 1.637805e-03	k: 3244	n:2050000
Cons ci ratio: 1.224096e-01	ci left: 4.693892e-04	ci right 5.310605e-04	k: 1024	n:2050000
KS ci ratio: 1.188186e-02	ci left: 5.011794e-02	ci right 5.071747e-02	k: 103355	n:2050000
DACH1   2050000 perm   2222 sec   (922 perm/sec)   p_kst 5.041707e-02   p_cons 4.995122e-04   p_joint 1.582439e-03

Joint ci ratio: 6.862253e-02	ci left: 1.527271e-03	ci right 1.636274e-03	k: 3257	n:2060000
Cons ci ratio: 1.220528e-01	ci left: 4.699342e-04	ci right 5.314841e-04	k: 1030	n:2060000
KS ci ratio: 1.185570e-02	ci left: 5.009680e-02	ci right 5.069475e-02	k: 103814	n:2060000
DACH1   2060000 perm   2242 sec   (919 perm/sec)   p_kst 5.039515e-02   p_cons 5.000000e-04   p_joint 1.581068e-03

Joint ci ratio: 6.980219e-02	ci left: 1.468146e-03	ci right 1.574802e-03	k: 3148	n:2070000
Cons ci ratio: 1.218757e-01	ci left: 4.690690e-04	ci right 5.304101e-04	k: 1033	n:2070000
KS ci ratio: 1.182428e-02	ci left: 5.011971e-02	ci right 5.071633e-02	k: 104364	n:2070000
DACH1   2070000 perm   2261 sec   (916 perm/sec)   p_kst 5.041739e-02   p_cons 4.990338e-04   p_joint 1.520773e-03

Joint ci ratio: 6.969171e-02	ci left: 1.465811e-03	ci right 1.572123e-03	k: 3158	n:2080000
Cons ci ratio: 1.217581e-01	ci left: 4.677461e-04	ci right 5.288509e-04	k: 1035	n:2080000
KS ci ratio: 1.179732e-02	ci left: 5.010835e-02	ci right 5.070347e-02	k: 104843	n:2080000
DACH1   2080000 perm   2280 sec   (912 perm/sec)   p_kst 5.040529e-02   p_cons 4.975962e-04   p_joint 1.518269e-03

Joint ci ratio: 6.952684e-02	ci left: 1.465850e-03	ci right 1.571903e-03	k: 3173	n:2090000
Cons ci ratio: 1.214654e-01	ci left: 4.678277e-04	ci right 5.287856e-04	k: 1040	n:2090000
KS ci ratio: 1.177077e-02	ci left: 5.009520e-02	ci right 5.068882e-02	k: 105318	n:2090000
DACH1   2090000 perm   2300 sec   (909 perm/sec)   p_kst 5.039139e-02   p_cons 4.976077e-04   p_joint 1.518182e-03

Joint ci ratio: 6.940674e-02	ci left: 1.464017e-03	ci right 1.569747e-03	k: 3184	n:2100000
Cons ci ratio: 1.214072e-01	ci left: 4.660616e-04	ci right 5.267582e-04	k: 1041	n:2100000
KS ci ratio: 1.174241e-02	ci left: 5.009832e-02	ci right 5.069054e-02	k: 105827	n:2100000
DACH1   2100000 perm   2319 sec   (905 perm/sec)   p_kst 5.039381e-02   p_cons 4.957143e-04   p_joint 1.516190e-03

Joint ci ratio: 6.917896e-02	ci left: 1.466858e-03	ci right 1.572432e-03	k: 3205	n:2110000
Cons ci ratio: 1.210591e-01	ci left: 4.666102e-04	ci right 5.271915e-04	k: 1047	n:2110000
KS ci ratio: 1.171235e-02	ci left: 5.011701e-02	ci right 5.070792e-02	k: 106369	n:2110000
DACH1   2110000 perm   2339 sec   (902 perm/sec)   p_kst 5.041185e-02   p_cons 4.962085e-04   p_joint 1.518957e-03

Joint ci ratio: 6.902842e-02	ci left: 1.466429e-03	ci right 1.571733e-03	k: 3219	n:2120000
Cons ci ratio: 1.207140e-01	ci left: 4.671538e-04	ci right 5.276205e-04	k: 1053	n:2120000
KS ci ratio: 1.168591e-02	ci left: 5.010777e-02	ci right 5.069723e-02	k: 106852	n:2120000
DACH1   2120000 perm   2359 sec   (899 perm/sec)   p_kst 5.040189e-02   p_cons 4.966981e-04   p_joint 1.518396e-03

Joint ci ratio: 6.880433e-02	ci left: 1.469234e-03	ci right 1.574383e-03	k: 3240	n:2130000
Cons ci ratio: 1.202018e-01	ci left: 4.690586e-04	ci right 5.294960e-04	k: 1062	n:2130000
KS ci ratio: 1.165827e-02	ci left: 5.010986e-02	ci right 5.069794e-02	k: 107359	n:2130000
DACH1   2130000 perm   2379 sec   (895 perm/sec)   p_kst 5.040329e-02   p_cons 4.985915e-04   p_joint 1.521127e-03

Joint ci ratio: 5.054442e-02	ci left: 2.731950e-03	ci right 2.874073e-03	k: 5997	n:2140000
Cons ci ratio: 9.199902e-02	ci left: 8.086589e-04	ci right 8.870945e-04	k: 1813	n:2140000
KS ci ratio: 1.163174e-02	ci left: 5.010447e-02	ci right 5.069114e-02	k: 107850	n:2140000
DACH1   2140000 perm   2399 sec   (892 perm/sec)   p_kst 5.039720e-02   p_cons 8.471963e-04   p_joint 2.802336e-03

Outputting figure to mutsig2_images.part000000000047/DACH1.14_2171_2140000_0.050397_0.0008472_0.0028023.png
                gene_name: DACH1
               theta_stop: 0.092 
                    nperm: 2140000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.00085 
      ci_cons_bounds_left: 0.00081 
     ci_cons_bounds_right: 0.00089 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0029 

Current progress: 10 percent done.
DCAF8L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
DCAF8L1   10000 perm   2 sec   (4612 perm/sec)   p_kst 8.974000e-01   p_cons 3.920000e-01   p_joint 7.517000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8L1.14_1807_10000_0.8974_0.392_0.7517.png
                gene_name: DCAF8L1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 11 percent done.
DACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
DACH2   10000 perm   2 sec   (4720 perm/sec)   p_kst 2.828000e-01   p_cons 5.305000e-01   p_joint 4.457000e-01

Outputting figure to mutsig2_images.part000000000047/DACH2.13_1857_10000_0.2828_0.5305_0.4457.png
                gene_name: DACH2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 13 percent done.
DCHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
Cons ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
KS ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
DCHS1   10000 perm   4 sec   (2622 perm/sec)   p_kst 3.986000e-01   p_cons 1.661000e-01   p_joint 2.188000e-01

Outputting figure to mutsig2_images.part000000000047/DCHS1.13_9977_10000_0.3986_0.1661_0.2188.png
                gene_name: DCHS1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 15 percent done.
DCLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
DCLK3   10000 perm   2 sec   (4654 perm/sec)   p_kst 2.307000e-01   p_cons 8.533000e-01   p_joint 4.761000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK3.13_1963_10000_0.2307_0.8533_0.4761.png
                gene_name: DCLK3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 16 percent done.
DACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.448821e-02	ci left: 2.610197e-01	ci right 2.785146e-01	k: 2697	n:10000
Cons ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
DACT1   10000 perm   2 sec   (4390 perm/sec)   p_kst 2.405000e-01   p_cons 3.628000e-01   p_joint 2.697000e-01

Outputting figure to mutsig2_images.part000000000047/DACT1.12_2527_10000_0.2405_0.3628_0.2697.png
                gene_name: DACT1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 18 percent done.
DCAF12L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 8.274164e-02	ci left: 1.756613e-01	ci right 1.909236e-01	k: 1832	n:10000
DCAF12L1   10000 perm   2 sec   (4962 perm/sec)   p_kst 1.832000e-01   p_cons 4.300000e-02   p_joint 1.152000e-01

Joint ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
Cons ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
KS ci ratio: 5.907099e-02	ci left: 1.750927e-01	ci right 1.858004e-01	k: 3608	n:20000
DCAF12L1   20000 perm   4 sec   (4505 perm/sec)   p_kst 1.804000e-01   p_cons 4.025000e-02   p_joint 8.725000e-02

Joint ci ratio: 7.806395e-02	ci left: 7.449868e-02	ci right 8.058343e-02	k: 2325	n:30000
Cons ci ratio: 1.104896e-01	ci left: 3.803765e-02	ci right 4.251860e-02	k: 1207	n:30000
KS ci ratio: 4.864035e-02	ci left: 1.736202e-01	ci right 1.823089e-01	k: 5338	n:30000
DCAF12L1   30000 perm   7 sec   (4292 perm/sec)   p_kst 1.779333e-01   p_cons 4.023333e-02   p_joint 7.750000e-02

Joint ci ratio: 7.870061e-02	ci left: 5.609704e-02	ci right 6.071733e-02	k: 2335	n:40000
Cons ci ratio: 9.838063e-02	ci left: 3.629386e-02	ci right 4.007357e-02	k: 1526	n:40000
KS ci ratio: 4.195074e-02	ci left: 1.754029e-01	ci right 1.829438e-01	k: 7166	n:40000
DCAF12L1   40000 perm   10 sec   (4153 perm/sec)   p_kst 1.791500e-01   p_cons 3.815000e-02   p_joint 5.837500e-02

Outputting figure to mutsig2_images.part000000000047/DCAF12L1.12_1396_40000_0.17915_0.03815_0.058375.png
                gene_name: DCAF12L1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 19 percent done.
DCLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
Cons ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
KS ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
DCLK1   10000 perm   2 sec   (4352 perm/sec)   p_kst 2.601000e-01   p_cons 1.564000e-01   p_joint 2.474000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK1.12_2258_10000_0.2601_0.1564_0.2474.png
                gene_name: DCLK1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 21 percent done.
DARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
Cons ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
KS ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
DARC   10000 perm   2 sec   (5440 perm/sec)   p_kst 1.944000e-01   p_cons 5.933000e-01   p_joint 3.039000e-01

Outputting figure to mutsig2_images.part000000000047/DARC.11_1046_10000_0.1944_0.5933_0.3039.png
                gene_name: DARC
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 23 percent done.
DBC1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
Cons ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
KS ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
DBC1   10000 perm   2 sec   (5125 perm/sec)   p_kst 5.777000e-01   p_cons 4.349000e-01   p_joint 6.722000e-01

Outputting figure to mutsig2_images.part000000000047/DBC1.10_2314_10000_0.5777_0.4349_0.6722.png
                gene_name: DBC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 24 percent done.
DAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
Cons ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
KS ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
DAB2   10000 perm   2 sec   (4799 perm/sec)   p_kst 3.374000e-01   p_cons 1.474000e-01   p_joint 2.532000e-01

Outputting figure to mutsig2_images.part000000000047/DAB2.10_2365_10000_0.3374_0.1474_0.2532.png
                gene_name: DAB2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 26 percent done.
DBT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
Cons ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
KS ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
DBT   10000 perm   2 sec   (5022 perm/sec)   p_kst 1.030000e-01   p_cons 6.911000e-01   p_joint 2.714000e-01

Joint ci ratio: 5.582050e-02	ci left: 1.922491e-01	ci right 2.033389e-01	k: 3955	n:20000
Cons ci ratio: 1.844199e-02	ci left: 6.867057e-01	ci right 6.995382e-01	k: 13863	n:20000
KS ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
DBT   20000 perm   4 sec   (4540 perm/sec)   p_kst 1.037500e-01   p_cons 6.931500e-01   p_joint 1.977500e-01

Outputting figure to mutsig2_images.part000000000047/DBT.10_1493_20000_0.10375_0.69315_0.19775.png
                gene_name: DBT
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 27 percent done.
DCDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
Cons ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
DCDC1   10000 perm   2 sec   (5431 perm/sec)   p_kst 4.264000e-01   p_cons 1.507000e-01   p_joint 2.002000e-01

Outputting figure to mutsig2_images.part000000000047/DCDC1.10_1093_10000_0.4264_0.1507_0.2002.png
                gene_name: DCDC1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 29 percent done.
DCLRE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
Cons ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
KS ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
DCLRE1A   10000 perm   2 sec   (4536 perm/sec)   p_kst 3.111000e-01   p_cons 3.608000e-01   p_joint 3.148000e-01

Outputting figure to mutsig2_images.part000000000047/DCLRE1A.10_3159_10000_0.3111_0.3608_0.3148.png
                gene_name: DCLRE1A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 31 percent done.
DAPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
DAPK1   10000 perm   2 sec   (4172 perm/sec)   p_kst 6.503000e-01   p_cons 2.940000e-02   p_joint 1.077000e-01

Joint ci ratio: 6.943580e-02	ci left: 1.326567e-01	ci right 1.422490e-01	k: 2748	n:20000
Cons ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
KS ci ratio: 1.953830e-02	ci left: 6.614745e-01	ci right 6.745766e-01	k: 13361	n:20000
DAPK1   20000 perm   5 sec   (3815 perm/sec)   p_kst 6.680500e-01   p_cons 3.435000e-02   p_joint 1.374000e-01

Joint ci ratio: 6.418959e-02	ci left: 1.070064e-01	ci right 1.141359e-01	k: 3316	n:30000
Cons ci ratio: 1.201466e-01	ci left: 3.220433e-02	ci right 3.635316e-02	k: 1027	n:30000
KS ci ratio: 1.592020e-02	ci left: 6.636088e-01	ci right 6.742918e-01	k: 20069	n:30000
DAPK1   30000 perm   8 sec   (3666 perm/sec)   p_kst 6.689667e-01   p_cons 3.423333e-02   p_joint 1.105333e-01

Joint ci ratio: 4.236905e-02	ci left: 1.725270e-01	ci right 1.800200e-01	k: 7050	n:40000
Cons ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
KS ci ratio: 1.380658e-02	ci left: 6.637116e-01	ci right 6.729640e-01	k: 26734	n:40000
DAPK1   40000 perm   11 sec   (3572 perm/sec)   p_kst 6.683500e-01   p_cons 3.257500e-02   p_joint 1.762500e-01

Joint ci ratio: 4.185614e-02	ci left: 1.461073e-01	ci right 1.523734e-01	k: 7461	n:50000
Cons ci ratio: 9.660563e-02	ci left: 3.033781e-02	ci right 3.343685e-02	k: 1593	n:50000
KS ci ratio: 1.232146e-02	ci left: 6.651967e-01	ci right 6.734637e-01	k: 33467	n:50000
DAPK1   50000 perm   14 sec   (3491 perm/sec)   p_kst 6.693400e-01   p_cons 3.186000e-02   p_joint 1.492200e-01

Outputting figure to mutsig2_images.part000000000047/DAPK1.9_4393_50000_0.66934_0.03186_0.14922.png
                gene_name: DAPK1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
DCAF8
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
Cons ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
KS ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
DCAF8   10000 perm   2 sec   (5153 perm/sec)   p_kst 2.172000e-01   p_cons 4.984000e-01   p_joint 3.839000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8.8_1842_10000_0.2172_0.4984_0.3839.png
                gene_name: DCAF8
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 34 percent done.
DCAF4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
Cons ci ratio: 4.381445e-02	ci left: 4.347281e-01	ci right 4.543042e-01	k: 4445	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
DCAF4L1   10000 perm   2 sec   (5584 perm/sec)   p_kst 5.918000e-01   p_cons 4.445000e-01   p_joint 7.743000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L1.7_1195_10000_0.5918_0.4445_0.7743.png
                gene_name: DCAF4L1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 35 percent done.
DAGLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
DAGLA   10000 perm   2 sec   (4873 perm/sec)   p_kst 3.011000e-01   p_cons 2.904000e-01   p_joint 3.950000e-01

Outputting figure to mutsig2_images.part000000000047/DAGLA.6_3205_10000_0.3011_0.2904_0.395.png
                gene_name: DAGLA
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
DAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
Cons ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
DAP3   10000 perm   2 sec   (5329 perm/sec)   p_kst 2.641000e-01   p_cons 6.862000e-01   p_joint 3.399000e-01

Outputting figure to mutsig2_images.part000000000047/DAP3.6_1245_10000_0.2641_0.6862_0.3399.png
                gene_name: DAP3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 39 percent done.
DAXX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
DAXX   10000 perm   2 sec   (5374 perm/sec)   p_kst 8.376000e-01   p_cons 6.790000e-02   p_joint 1.435000e-01

Joint ci ratio: 4.799680e-02	ci left: 2.440601e-01	ci right 2.561126e-01	k: 5001	n:20000
Cons ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
KS ci ratio: 1.229989e-02	ci left: 8.302884e-01	ci right 8.406139e-01	k: 16710	n:20000
DAXX   20000 perm   4 sec   (4758 perm/sec)   p_kst 8.355000e-01   p_cons 7.165000e-02   p_joint 2.500500e-01

Outputting figure to mutsig2_images.part000000000047/DAXX.6_2308_20000_0.8355_0.07165_0.25005.png
                gene_name: DAXX
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 40 percent done.
DBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
Cons ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
KS ci ratio: 1.653637e-01	ci left: 4.878580e-02	ci right 5.767674e-02	k: 531	n:10000
DBX2   10000 perm   2 sec   (5990 perm/sec)   p_kst 5.310000e-02   p_cons 8.552000e-01   p_joint 9.550000e-02

Joint ci ratio: 7.884271e-02	ci left: 1.056464e-01	ci right 1.143673e-01	k: 2199	n:20000
Cons ci ratio: 1.133039e-02	ci left: 8.519194e-01	ci right 8.616767e-01	k: 17137	n:20000
KS ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
DBX2   20000 perm   4 sec   (5291 perm/sec)   p_kst 5.575000e-02   p_cons 8.568500e-01   p_joint 1.099500e-01

Joint ci ratio: 6.355584e-02	ci left: 1.089454e-01	ci right 1.161298e-01	k: 3375	n:30000
Cons ci ratio: 9.176101e-03	ci left: 8.548418e-01	ci right 8.627552e-01	k: 25765	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
DBX2   30000 perm   6 sec   (5038 perm/sec)   p_kst 5.576667e-02   p_cons 8.588333e-01   p_joint 1.125000e-01

Outputting figure to mutsig2_images.part000000000047/DBX2.6_1036_30000_0.055767_0.85883_0.1125.png
                gene_name: DBX2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 42 percent done.
DCAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
Cons ci ratio: 2.976194e-02	ci left: 6.247723e-01	ci right 6.437494e-01	k: 6343	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
DCAF6   10000 perm   2 sec   (5059 perm/sec)   p_kst 4.202000e-01   p_cons 6.343000e-01   p_joint 8.369000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF6.6_2723_10000_0.4202_0.6343_0.8369.png
                gene_name: DCAF6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 44 percent done.
DCAF8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
Cons ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
KS ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
DCAF8L2   10000 perm   2 sec   (5842 perm/sec)   p_kst 8.212000e-01   p_cons 8.240000e-02   p_joint 2.725000e-01

Joint ci ratio: 4.987209e-02	ci left: 2.300793e-01	ci right 2.418976e-01	k: 4719	n:20000
Cons ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
KS ci ratio: 1.297178e-02	ci left: 8.149581e-01	ci right 8.256486e-01	k: 16407	n:20000
DCAF8L2   20000 perm   4 sec   (5179 perm/sec)   p_kst 8.203500e-01   p_cons 8.275000e-02   p_joint 2.359500e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8L2.6_1900_20000_0.82035_0.08275_0.23595.png
                gene_name: DCAF8L2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 45 percent done.
DCBLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
DCBLD1   10000 perm   2 sec   (5885 perm/sec)   p_kst 4.099000e-01   p_cons 2.131000e-01   p_joint 5.779000e-01

Outputting figure to mutsig2_images.part000000000047/DCBLD1.6_1680_10000_0.4099_0.2131_0.5779.png
                gene_name: DCBLD1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 47 percent done.
DCDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
Cons ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
KS ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
DCDC2   10000 perm   2 sec   (5726 perm/sec)   p_kst 5.843000e-01   p_cons 7.180000e-02   p_joint 2.114000e-01

Joint ci ratio: 5.502411e-02	ci left: 1.968007e-01	ci right 2.079860e-01	k: 4047	n:20000
Cons ci ratio: 1.001870e-01	ci left: 6.752704e-02	ci right 7.469825e-02	k: 1421	n:20000
KS ci ratio: 2.394620e-02	ci left: 5.657088e-01	ci right 5.794701e-01	k: 11452	n:20000
DCDC2   20000 perm   4 sec   (5092 perm/sec)   p_kst 5.726000e-01   p_cons 7.105000e-02   p_joint 2.023500e-01

Joint ci ratio: 4.887997e-02	ci left: 1.722007e-01	ci right 1.808620e-01	k: 5295	n:30000
Cons ci ratio: 8.234451e-02	ci left: 6.733404e-02	ci right 7.314952e-02	k: 2106	n:30000
KS ci ratio: 1.953241e-02	ci left: 5.674793e-01	ci right 5.787065e-01	k: 17193	n:30000
DCDC2   30000 perm   6 sec   (4829 perm/sec)   p_kst 5.731000e-01   p_cons 7.020000e-02   p_joint 1.765000e-01

Outputting figure to mutsig2_images.part000000000047/DCDC2.6_1471_30000_0.5731_0.0702_0.1765.png
                gene_name: DCDC2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 48 percent done.
CYYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
Cons ci ratio: 1.397384e-02	ci left: 8.809390e-01	ci right 8.934345e-01	k: 8873	n:10000
KS ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
CYYR1   10000 perm   2 sec   (6480 perm/sec)   p_kst 4.826000e-01   p_cons 8.873000e-01   p_joint 7.300000e-01

Outputting figure to mutsig2_images.part000000000047/CYYR1.5_481_10000_0.4826_0.8873_0.73.png
                gene_name: CYYR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 50 percent done.
DBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.303562e-02	ci left: 3.438259e-01	ci right 3.626596e-01	k: 3532	n:10000
Cons ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
KS ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
DBN1   10000 perm   2 sec   (5482 perm/sec)   p_kst 3.180000e-01   p_cons 2.535000e-01   p_joint 3.532000e-01

Outputting figure to mutsig2_images.part000000000047/DBN1.5_2102_10000_0.318_0.2535_0.3532.png
                gene_name: DBN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 52 percent done.
DCAF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
Cons ci ratio: 1.955174e-02	ci left: 7.928348e-01	ci right 8.085896e-01	k: 8008	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
DCAF13   10000 perm   2 sec   (5357 perm/sec)   p_kst 3.656000e-01   p_cons 8.008000e-01   p_joint 5.849000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF13.5_1838_10000_0.3656_0.8008_0.5849.png
                gene_name: DCAF13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 53 percent done.
D2HGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
Cons ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
KS ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
D2HGDH   10000 perm   2 sec   (5770 perm/sec)   p_kst 3.806000e-01   p_cons 6.140000e-02   p_joint 1.576000e-01

Joint ci ratio: 6.282217e-02	ci left: 1.578065e-01	ci right 1.680917e-01	k: 3258	n:20000
Cons ci ratio: 1.074430e-01	ci left: 5.903783e-02	ci right 6.579008e-02	k: 1247	n:20000
KS ci ratio: 3.553035e-02	ci left: 3.715720e-01	ci right 3.850634e-01	k: 7566	n:20000
D2HGDH   20000 perm   4 sec   (5117 perm/sec)   p_kst 3.783000e-01   p_cons 6.235000e-02   p_joint 1.629000e-01

Joint ci ratio: 5.868594e-02	ci left: 1.256542e-01	ci right 1.332844e-01	k: 3883	n:30000
Cons ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
KS ci ratio: 2.963808e-02	ci left: 3.628382e-01	ci right 3.737873e-01	k: 11049	n:30000
D2HGDH   30000 perm   6 sec   (4875 perm/sec)   p_kst 3.683000e-01   p_cons 6.243333e-02   p_joint 1.294333e-01

Outputting figure to mutsig2_images.part000000000047/D2HGDH.4_1602_30000_0.3683_0.062433_0.12943.png
                gene_name: D2HGDH
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
DAAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.472349e-02	ci left: 7.064443e-01	ci right 7.242301e-01	k: 7154	n:10000
Cons ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
KS ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
DAAM2   10000 perm   2 sec   (5214 perm/sec)   p_kst 4.531000e-01   p_cons 2.845000e-01   p_joint 7.154000e-01

Outputting figure to mutsig2_images.part000000000047/DAAM2.4_3300_10000_0.4531_0.2845_0.7154.png
                gene_name: DAAM2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 56 percent done.
DCAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
Cons ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
KS ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
DCAF5   10000 perm   2 sec   (5483 perm/sec)   p_kst 1.305000e-01   p_cons 2.041000e-01   p_joint 1.145000e-01

Joint ci ratio: 5.249014e-02	ci left: 2.122941e-01	ci right 2.237880e-01	k: 4360	n:20000
Cons ci ratio: 5.275320e-02	ci left: 2.106105e-01	ci right 2.220721e-01	k: 4326	n:20000
KS ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
DCAF5   20000 perm   4 sec   (4886 perm/sec)   p_kst 1.310000e-01   p_cons 2.163000e-01   p_joint 2.180000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF5.4_2865_20000_0.131_0.2163_0.218.png
                gene_name: DCAF5
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 58 percent done.
DCBLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
Cons ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
KS ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
DCBLD2   10000 perm   2 sec   (5327 perm/sec)   p_kst 2.266000e-01   p_cons 3.634000e-01   p_joint 3.380000e-01

Outputting figure to mutsig2_images.part000000000047/DCBLD2.4_2392_10000_0.2266_0.3634_0.338.png
                gene_name: DCBLD2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
DCLRE1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
KS ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
DCLRE1C   10000 perm   2 sec   (5485 perm/sec)   p_kst 6.620000e-02   p_cons 2.439000e-01   p_joint 1.669000e-01

Joint ci ratio: 5.770006e-02	ci left: 1.820619e-01	ci right 1.929291e-01	k: 3749	n:20000
Cons ci ratio: 4.968611e-02	ci left: 2.314175e-01	ci right 2.432590e-01	k: 4746	n:20000
KS ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
DCLRE1C   20000 perm   4 sec   (4890 perm/sec)   p_kst 6.870000e-02   p_cons 2.373000e-01   p_joint 1.874500e-01

Joint ci ratio: 6.048816e-02	ci left: 1.190731e-01	ci right 1.265334e-01	k: 3683	n:30000
Cons ci ratio: 4.053321e-02	ci left: 2.328258e-01	ci right 2.424917e-01	k: 7129	n:30000
KS ci ratio: 8.302460e-02	ci left: 6.628788e-02	ci right 7.206256e-02	k: 2074	n:30000
DCLRE1C   30000 perm   6 sec   (4664 perm/sec)   p_kst 6.913333e-02   p_cons 2.376333e-01   p_joint 1.227667e-01

Outputting figure to mutsig2_images.part000000000047/DCLRE1C.4_2135_30000_0.069133_0.23763_0.12277.png
                gene_name: DCLRE1C
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 61 percent done.
DAAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
Cons ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
KS ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
DAAM1   10000 perm   2 sec   (4990 perm/sec)   p_kst 6.438000e-01   p_cons 2.078000e-01   p_joint 5.948000e-01

Outputting figure to mutsig2_images.part000000000047/DAAM1.3_3337_10000_0.6438_0.2078_0.5948.png
                gene_name: DAAM1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 63 percent done.
DAB2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
Cons ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
KS ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
DAB2IP   10000 perm   2 sec   (5110 perm/sec)   p_kst 6.557000e-01   p_cons 3.643000e-01   p_joint 6.911000e-01

Outputting figure to mutsig2_images.part000000000047/DAB2IP.3_3564_10000_0.6557_0.3643_0.6911.png
                gene_name: DAB2IP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 65 percent done.
DAPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
DAPK2   10000 perm   2 sec   (6372 perm/sec)   p_kst 2.057000e-01   p_cons 1.688000e-01   p_joint 2.692000e-01

Outputting figure to mutsig2_images.part000000000047/DAPK2.3_1157_10000_0.2057_0.1688_0.2692.png
                gene_name: DAPK2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 66 percent done.
DARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.397384e-02	ci left: 8.809390e-01	ci right 8.934345e-01	k: 8873	n:10000
Cons ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
KS ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
DARS2   10000 perm   2 sec   (5919 perm/sec)   p_kst 5.882000e-01   p_cons 7.078000e-01   p_joint 8.873000e-01

Outputting figure to mutsig2_images.part000000000047/DARS2.3_2006_10000_0.5882_0.7078_0.8873.png
                gene_name: DARS2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 68 percent done.
DBF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
Cons ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
DBF4   10000 perm   2 sec   (5920 perm/sec)   p_kst 1.071000e-01   p_cons 7.779000e-01   p_joint 3.957000e-01

Joint ci ratio: 5.402191e-02	ci left: 2.027392e-01	ci right 2.140458e-01	k: 4167	n:20000
Cons ci ratio: 1.415557e-02	ci left: 7.874690e-01	ci right 7.987456e-01	k: 15863	n:20000
KS ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
DBF4   20000 perm   4 sec   (5229 perm/sec)   p_kst 1.061000e-01   p_cons 7.931500e-01   p_joint 2.083500e-01

Outputting figure to mutsig2_images.part000000000047/DBF4.3_2073_20000_0.1061_0.79315_0.20835.png
                gene_name: DBF4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 69 percent done.
DBF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
Cons ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
KS ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
DBF4B   10000 perm   2 sec   (5970 perm/sec)   p_kst 7.800000e-01   p_cons 5.683000e-01   p_joint 9.890000e-01

Outputting figure to mutsig2_images.part000000000047/DBF4B.3_1949_10000_0.78_0.5683_0.989.png
                gene_name: DBF4B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 71 percent done.
DBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
Cons ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
KS ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
DBX1   10000 perm   2 sec   (6509 perm/sec)   p_kst 3.746000e-01   p_cons 1.894000e-01   p_joint 3.753000e-01

Outputting figure to mutsig2_images.part000000000047/DBX1.3_1165_10000_0.3746_0.1894_0.3753.png
                gene_name: DBX1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 73 percent done.
DCAF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.407617e-03	ci left: 9.518996e-01	ci right 9.600321e-01	k: 9561	n:10000
KS ci ratio: 3.928828e-02	ci left: 4.889518e-01	ci right 5.086489e-01	k: 4988	n:10000
DCAF12   10000 perm   2 sec   (6310 perm/sec)   p_kst 4.988000e-01   p_cons 9.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCAF12.3_1398_10000_0.4988_0.9561_1.png
                gene_name: DCAF12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
DCAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
Cons ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
KS ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
DCAF4   10000 perm   2 sec   (6181 perm/sec)   p_kst 2.515000e-01   p_cons 2.743000e-01   p_joint 3.569000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4.3_1543_10000_0.2515_0.2743_0.3569.png
                gene_name: DCAF4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 76 percent done.
DCAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
Cons ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
KS ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
DCAF7   10000 perm   2 sec   (6274 perm/sec)   p_kst 3.433000e-01   p_cons 2.070000e-01   p_joint 3.889000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF7.3_1058_10000_0.3433_0.207_0.3889.png
                gene_name: DCAF7
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 77 percent done.
DCP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
Cons ci ratio: 3.051038e-02	ci left: 6.131152e-01	ci right 6.322133e-01	k: 6227	n:10000
KS ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
DCP1A   10000 perm   2 sec   (6096 perm/sec)   p_kst 1.098000e-01   p_cons 6.227000e-01   p_joint 2.318000e-01

Joint ci ratio: 5.420267e-02	ci left: 2.016503e-01	ci right 2.129349e-01	k: 4145	n:20000
Cons ci ratio: 2.148572e-02	ci left: 6.178965e-01	ci right 6.313672e-01	k: 12493	n:20000
KS ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
DCP1A   20000 perm   4 sec   (5363 perm/sec)   p_kst 1.092000e-01   p_cons 6.246500e-01   p_joint 2.072500e-01

Outputting figure to mutsig2_images.part000000000047/DCP1A.3_1789_20000_0.1092_0.62465_0.20725.png
                gene_name: DCP1A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
DAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
Cons ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
KS ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
DAG1   10000 perm   2 sec   (5677 perm/sec)   p_kst 5.932000e-01   p_cons 1.301000e-01   p_joint 3.733000e-01

Joint ci ratio: 1.322630e-02	ci left: 8.090929e-01	ci right 8.199155e-01	k: 16291	n:20000
Cons ci ratio: 6.901435e-02	ci left: 1.340854e-01	ci right 1.437198e-01	k: 2777	n:20000
KS ci ratio: 2.321535e-02	ci left: 5.808406e-01	ci right 5.945339e-01	k: 11754	n:20000
DAG1   20000 perm   4 sec   (5059 perm/sec)   p_kst 5.877000e-01   p_cons 1.388500e-01   p_joint 8.145500e-01

Outputting figure to mutsig2_images.part000000000047/DAG1.2_2696_20000_0.5877_0.13885_0.81455.png
                gene_name: DAG1
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 81 percent done.
DAPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
Cons ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
DAPP1   10000 perm   1 sec   (6952 perm/sec)   p_kst 2.081000e-01   p_cons 5.956000e-01   p_joint 3.022000e-01

Outputting figure to mutsig2_images.part000000000047/DAPP1.2_879_10000_0.2081_0.5956_0.3022.png
                gene_name: DAPP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 82 percent done.
DAZL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
Cons ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
DAZL   10000 perm   1 sec   (6755 perm/sec)   p_kst 6.929000e-01   p_cons 2.842000e-01   p_joint 4.904000e-01

Outputting figure to mutsig2_images.part000000000047/DAZL.2_932_10000_0.6929_0.2842_0.4904.png
                gene_name: DAZL
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 84 percent done.
DBH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
DBH   10000 perm   2 sec   (6161 perm/sec)   p_kst 1.030000e-02   p_cons 2.496000e-01   p_joint 4.080000e-02

Joint ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
Cons ci ratio: 4.765379e-02	ci left: 2.467383e-01	ci right 2.588337e-01	k: 5055	n:20000
KS ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
DBH   20000 perm   4 sec   (5416 perm/sec)   p_kst 1.005000e-02   p_cons 2.527500e-01   p_joint 1.705000e-02

Joint ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
Cons ci ratio: 3.886811e-02	ci left: 2.482537e-01	ci right 2.581275e-01	k: 7595	n:30000
KS ci ratio: 2.294711e-01	ci left: 8.527638e-03	ci right 1.076886e-02	k: 288	n:30000
DBH   30000 perm   6 sec   (5140 perm/sec)   p_kst 9.600000e-03   p_cons 2.531667e-01   p_joint 5.733333e-03

Joint ci ratio: 2.486493e-01	ci left: 5.407373e-03	ci right 6.965625e-03	k: 246	n:40000
Cons ci ratio: 3.358533e-02	ci left: 2.497645e-01	ci right 2.583212e-01	k: 10161	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
DBH   40000 perm   8 sec   (4958 perm/sec)   p_kst 9.625000e-03   p_cons 2.540250e-01   p_joint 6.150000e-03

Joint ci ratio: 2.226715e-01	ci left: 5.474083e-03	ci right 6.864189e-03	k: 307	n:50000
Cons ci ratio: 2.989060e-02	ci left: 2.520993e-01	ci right 2.597690e-01	k: 12796	n:50000
KS ci ratio: 1.776867e-01	ci left: 8.783002e-03	ci right 1.051464e-02	k: 481	n:50000
DBH   50000 perm   10 sec   (4807 perm/sec)   p_kst 9.620000e-03   p_cons 2.559200e-01   p_joint 6.140000e-03

Joint ci ratio: 2.132521e-01	ci left: 5.002801e-03	ci right 6.212442e-03	k: 335	n:60000
Cons ci ratio: 2.716786e-02	ci left: 2.540877e-01	ci right 2.611024e-01	k: 15455	n:60000
KS ci ratio: 1.614181e-01	ci left: 8.947225e-03	ci right 1.053407e-02	k: 583	n:60000
DBH   60000 perm   13 sec   (4689 perm/sec)   p_kst 9.716667e-03   p_cons 2.575833e-01   p_joint 5.583333e-03

Joint ci ratio: 2.005438e-01	ci left: 4.884113e-03	ci right 5.986065e-03	k: 379	n:70000
Cons ci ratio: 2.521282e-02	ci left: 2.534386e-01	ci right 2.599244e-01	k: 17967	n:70000
KS ci ratio: 1.511715e-01	ci left: 8.794644e-03	ci right 1.024645e-02	k: 665	n:70000
DBH   70000 perm   15 sec   (4585 perm/sec)   p_kst 9.500000e-03   p_cons 2.566714e-01   p_joint 5.414286e-03

Joint ci ratio: 1.565645e-01	ci left: 7.166003e-03	ci right 8.395097e-03	k: 621	n:80000
Cons ci ratio: 2.360211e-02	ci left: 2.533644e-01	ci right 2.594282e-01	k: 20511	n:80000
KS ci ratio: 1.415154e-01	ci left: 8.827333e-03	ci right 1.018359e-02	k: 759	n:80000
DBH   80000 perm   18 sec   (4490 perm/sec)   p_kst 9.487500e-03   p_cons 2.563875e-01   p_joint 7.762500e-03

Joint ci ratio: 9.721729e-02	ci left: 1.688109e-02	ci right 1.861686e-02	k: 1596	n:90000
Cons ci ratio: 2.217668e-02	ci left: 2.548338e-01	ci right 2.605596e-01	k: 23192	n:90000
KS ci ratio: 1.334221e-01	ci left: 8.865802e-03	ci right 1.014389e-02	k: 854	n:90000
DBH   90000 perm   20 sec   (4402 perm/sec)   p_kst 9.488889e-03   p_cons 2.576889e-01   p_joint 1.773333e-02

Joint ci ratio: 8.631123e-02	ci left: 1.933699e-02	ci right 2.109100e-02	k: 2020	n:100000
Cons ci ratio: 2.104745e-02	ci left: 2.548219e-01	ci right 2.602522e-01	k: 25753	n:100000
KS ci ratio: 1.261072e-01	ci left: 8.966156e-03	ci right 1.018254e-02	k: 956	n:100000
DBH   100000 perm   23 sec   (4321 perm/sec)   p_kst 9.560000e-03   p_cons 2.575300e-01   p_joint 2.020000e-02

Joint ci ratio: 8.337469e-02	ci left: 1.887800e-02	ci right 2.052928e-02	k: 2166	n:110000
Cons ci ratio: 2.007866e-02	ci left: 2.547457e-01	ci right 2.599216e-01	k: 28306	n:110000
KS ci ratio: 1.209188e-01	ci left: 8.891077e-03	ci right 1.004410e-02	k: 1040	n:110000
DBH   110000 perm   26 sec   (4243 perm/sec)   p_kst 9.454545e-03   p_cons 2.573273e-01   p_joint 1.969091e-02

Joint ci ratio: 8.070017e-02	ci left: 1.850456e-02	ci right 2.006879e-02	k: 2313	n:120000
Cons ci ratio: 1.920432e-02	ci left: 2.552437e-01	ci right 2.602013e-01	k: 30926	n:120000
KS ci ratio: 1.144872e-01	ci left: 9.120787e-03	ci right 1.023643e-02	k: 1160	n:120000
DBH   120000 perm   29 sec   (4167 perm/sec)   p_kst 9.666667e-03   p_cons 2.577167e-01   p_joint 1.927500e-02

Joint ci ratio: 7.788077e-02	ci left: 1.837038e-02	ci right 1.986656e-02	k: 2484	n:130000
Cons ci ratio: 1.844211e-02	ci left: 2.555235e-01	ci right 2.602873e-01	k: 33527	n:130000
KS ci ratio: 1.103842e-01	ci left: 9.077064e-03	ci right 1.014498e-02	k: 1248	n:130000
DBH   130000 perm   32 sec   (4090 perm/sec)   p_kst 9.600000e-03   p_cons 2.579000e-01   p_joint 1.910769e-02

Joint ci ratio: 7.532308e-02	ci left: 1.826321e-02	ci right 1.969966e-02	k: 2656	n:140000
Cons ci ratio: 1.777229e-02	ci left: 2.555885e-01	ci right 2.601787e-01	k: 36103	n:140000
KS ci ratio: 1.066928e-01	ci left: 9.040202e-03	ci right 1.006598e-02	k: 1336	n:140000
DBH   140000 perm   35 sec   (4017 perm/sec)   p_kst 9.542857e-03   p_cons 2.578786e-01   p_joint 1.897143e-02

Joint ci ratio: 7.494208e-02	ci left: 1.724157e-02	ci right 1.859049e-02	k: 2686	n:150000
Cons ci ratio: 1.717201e-02	ci left: 2.556143e-01	ci right 2.600484e-01	k: 38674	n:150000
KS ci ratio: 1.026240e-01	ci left: 9.138701e-03	ci right 1.013372e-02	k: 1444	n:150000
DBH   150000 perm   38 sec   (3947 perm/sec)   p_kst 9.626667e-03   p_cons 2.578267e-01   p_joint 1.790667e-02

Joint ci ratio: 7.269333e-02	ci left: 1.720071e-02	ci right 1.850435e-02	k: 2855	n:160000
Cons ci ratio: 1.662221e-02	ci left: 2.557888e-01	ci right 2.600824e-01	k: 41269	n:160000
KS ci ratio: 9.970325e-02	ci left: 9.091422e-03	ci right 1.005148e-02	k: 1530	n:160000
DBH   160000 perm   41 sec   (3881 perm/sec)   p_kst 9.562500e-03   p_cons 2.579313e-01   p_joint 1.784375e-02

Outputting figure to mutsig2_images.part000000000047/DBH.2_1902_160000_0.0095625_0.25793_0.017844.png
                gene_name: DBH
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.0096 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 85 percent done.
DBNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
Cons ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
KS ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
DBNL   10000 perm   1 sec   (6873 perm/sec)   p_kst 4.244000e-01   p_cons 9.862000e-01   p_joint 5.459000e-01

Outputting figure to mutsig2_images.part000000000047/DBNL.2_1372_10000_0.4244_0.9862_0.5459.png
                gene_name: DBNL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 87 percent done.
DBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
Cons ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
KS ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
DBR1   10000 perm   2 sec   (6272 perm/sec)   p_kst 5.952000e-01   p_cons 7.036000e-01   p_joint 7.266000e-01

Outputting figure to mutsig2_images.part000000000047/DBR1.2_1667_10000_0.5952_0.7036_0.7266.png
                gene_name: DBR1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 89 percent done.
DCAF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
DCAF17   10000 perm   2 sec   (6630 perm/sec)   p_kst 6.468000e-01   p_cons 9.290000e-02   p_joint 2.189000e-01

Joint ci ratio: 5.015027e-02	ci left: 2.280969e-01	ci right 2.398805e-01	k: 4679	n:20000
Cons ci ratio: 8.663852e-02	ci left: 8.881317e-02	ci right 9.690565e-02	k: 1856	n:20000
KS ci ratio: 2.064389e-02	ci left: 6.365153e-01	ci right 6.498430e-01	k: 12864	n:20000
DCAF17   20000 perm   3 sec   (5798 perm/sec)   p_kst 6.432000e-01   p_cons 9.280000e-02   p_joint 2.339500e-01

Outputting figure to mutsig2_images.part000000000047/DCAF17.2_1619_20000_0.6432_0.0928_0.23395.png
                gene_name: DCAF17
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 90 percent done.
DCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
Cons ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
KS ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
DCD   10000 perm   1 sec   (7697 perm/sec)   p_kst 4.479000e-01   p_cons 4.093000e-01   p_joint 6.245000e-01

Outputting figure to mutsig2_images.part000000000047/DCD.2_353_10000_0.4479_0.4093_0.6245.png
                gene_name: DCD
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 92 percent done.
DCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
Cons ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
KS ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
DCI   10000 perm   1 sec   (6781 perm/sec)   p_kst 3.509000e-01   p_cons 4.099000e-01   p_joint 9.763000e-01

Outputting figure to mutsig2_images.part000000000047/DCI.2_937_10000_0.3509_0.4099_0.9763.png
                gene_name: DCI
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 94 percent done.
DCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
DCK   10000 perm   1 sec   (6801 perm/sec)   p_kst 3.405000e-01   p_cons 5.961000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000047/DCK.2_811_10000_0.3405_0.5961_0.4118.png
                gene_name: DCK
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 95 percent done.
DCLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
DCLK2   10000 perm   2 sec   (5877 perm/sec)   p_kst 8.044000e-01   p_cons 3.900000e-02   p_joint 7.616000e-01

Joint ci ratio: 1.738170e-02	ci left: 7.114558e-01	ci right 7.239809e-01	k: 14355	n:20000
Cons ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
KS ci ratio: 1.352092e-02	ci left: 8.022695e-01	ci right 8.132408e-01	k: 16156	n:20000
DCLK2   20000 perm   4 sec   (5190 perm/sec)   p_kst 8.078000e-01   p_cons 3.870000e-02   p_joint 7.177500e-01

Joint ci ratio: 2.290878e-02	ci left: 4.882266e-01	ci right 4.995745e-01	k: 14817	n:30000
Cons ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
KS ci ratio: 1.099702e-02	ci left: 8.045054e-01	ci right 8.134347e-01	k: 24270	n:30000
DCLK2   30000 perm   6 sec   (4932 perm/sec)   p_kst 8.090000e-01   p_cons 3.850000e-02   p_joint 4.939000e-01

Joint ci ratio: 1.986963e-02	ci left: 4.882387e-01	ci right 4.980623e-01	k: 19726	n:40000
Cons ci ratio: 9.831371e-02	ci left: 3.634267e-02	ci right 4.012474e-02	k: 1528	n:40000
KS ci ratio: 9.488980e-03	ci left: 8.062465e-01	ci right 8.139584e-01	k: 32405	n:40000
DCLK2   40000 perm   8 sec   (4758 perm/sec)   p_kst 8.101250e-01   p_cons 3.820000e-02   p_joint 4.931500e-01

Outputting figure to mutsig2_images.part000000000047/DCLK2.2_2365_40000_0.81012_0.0382_0.49315.png
                gene_name: DCLK2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 97 percent done.
DCLRE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
DCLRE1B   10000 perm   2 sec   (6636 perm/sec)   p_kst 8.100000e-01   p_cons 3.999000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCLRE1B.2_1615_10000_0.81_0.3999_1.png
                gene_name: DCLRE1B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
DCP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
DCP1B   10000 perm   2 sec   (6452 perm/sec)   p_kst 1.200000e-03   p_cons 1   p_joint 5.400000e-03

Joint ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
DCP1B   20000 perm   4 sec   (5694 perm/sec)   p_kst 1.300000e-03   p_cons 1   p_joint 1.995000e-02

Joint ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 5.713332e-01	ci left: 1.122805e-03	ci right 2.044728e-03	k: 46	n:30000
DCP1B   30000 perm   6 sec   (5377 perm/sec)   p_kst 1.533333e-03   p_cons 1   p_joint 5.566667e-03

Joint ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 4.821144e-01	ci left: 1.254358e-03	ci right 2.070734e-03	k: 65	n:40000
DCP1B   40000 perm   8 sec   (5180 perm/sec)   p_kst 1.625000e-03   p_cons 1   p_joint 7.575000e-03

Joint ci ratio: 2.027578e-01	ci left: 6.667492e-03	ci right 8.190535e-03	k: 370	n:50000
Cons ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
KS ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
DCP1B   50000 perm   10 sec   (5029 perm/sec)   p_kst 1.600000e-03   p_cons 1   p_joint 7.400000e-03

Joint ci ratio: 1.125017e-01	ci left: 1.871643e-02	ci right 2.096368e-02	k: 1189	n:60000
Cons ci ratio: 9.239298e-05	ci left: 9.999071e-01	ci right 9.999996e-01	k: 59999	n:60000
KS ci ratio: 4.039969e-01	ci left: 1.251227e-03	ci right 1.898523e-03	k: 93	n:60000
DCP1B   60000 perm   12 sec   (4898 perm/sec)   p_kst 1.550000e-03   p_cons 9.999833e-01   p_joint 1.981667e-02

Joint ci ratio: 2.329603e-01	ci left: 3.559389e-03	ci right 4.511020e-03	k: 281	n:70000
Cons ci ratio: 7.919426e-05	ci left: 9.999204e-01	ci right 9.999996e-01	k: 69999	n:70000
KS ci ratio: 3.734609e-01	ci left: 1.278745e-03	ci right 1.878076e-03	k: 109	n:70000
DCP1B   70000 perm   15 sec   (4776 perm/sec)   p_kst 1.557143e-03   p_cons 9.999857e-01   p_joint 4.014286e-03

Joint ci ratio: 2.326059e-01	ci left: 3.126152e-03	ci right 3.960490e-03	k: 282	n:80000
Cons ci ratio: 6.929517e-05	ci left: 9.999304e-01	ci right 9.999997e-01	k: 79999	n:80000
KS ci ratio: 3.560918e-01	ci left: 1.243801e-03	ci right 1.793369e-03	k: 120	n:80000
DCP1B   80000 perm   17 sec   (4657 perm/sec)   p_kst 1.500000e-03   p_cons 9.999875e-01   p_joint 3.525000e-03

Joint ci ratio: 2.194328e-01	ci left: 3.145692e-03	ci right 3.931288e-03	k: 317	n:90000
Cons ci ratio: 6.159583e-05	ci left: 9.999381e-01	ci right 9.999997e-01	k: 89999	n:90000
KS ci ratio: 3.334348e-01	ci left: 1.278155e-03	ci right 1.799266e-03	k: 137	n:90000
DCP1B   90000 perm   20 sec   (4552 perm/sec)   p_kst 1.522222e-03   p_cons 9.999889e-01   p_joint 3.522222e-03

Joint ci ratio: 3.146163e-01	ci left: 1.306526e-03	ci right 1.803105e-03	k: 154	n:100000
Cons ci ratio: 5.543634e-05	ci left: 9.999443e-01	ci right 9.999997e-01	k: 99999	n:100000
KS ci ratio: 3.146163e-01	ci left: 1.306526e-03	ci right 1.803105e-03	k: 154	n:100000
DCP1B   100000 perm   22 sec   (4463 perm/sec)   p_kst 1.540000e-03   p_cons 9.999900e-01   p_joint 1.540000e-03

Joint ci ratio: 3.004165e-01	ci left: 1.313599e-03	ci right 1.786035e-03	k: 169	n:110000
Cons ci ratio: 5.039674e-05	ci left: 9.999493e-01	ci right 9.999998e-01	k: 109999	n:110000
KS ci ratio: 3.004165e-01	ci left: 1.313599e-03	ci right 1.786035e-03	k: 169	n:110000
DCP1B   110000 perm   25 sec   (4378 perm/sec)   p_kst 1.536364e-03   p_cons 9.999909e-01   p_joint 1.536364e-03

Joint ci ratio: 2.841603e-01	ci left: 1.358593e-03	ci right 1.816036e-03	k: 189	n:120000
Cons ci ratio: 7.304489e-05	ci left: 9.999147e-01	ci right 9.999909e-01	k: 119996	n:120000
KS ci ratio: 2.841603e-01	ci left: 1.358593e-03	ci right 1.816036e-03	k: 189	n:120000
DCP1B   120000 perm   28 sec   (4293 perm/sec)   p_kst 1.575000e-03   p_cons 9.999667e-01   p_joint 1.575000e-03

Joint ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
Cons ci ratio: 6.742605e-05	ci left: 9.999212e-01	ci right 9.999916e-01	k: 129996	n:130000
KS ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
DCP1B   130000 perm   31 sec   (4213 perm/sec)   p_kst 1.530769e-03   p_cons 9.999692e-01   p_joint 1.530769e-03

Joint ci ratio: 2.634786e-01	ci left: 1.370758e-03	ci right 1.793174e-03	k: 220	n:140000
Cons ci ratio: 6.260990e-05	ci left: 9.999268e-01	ci right 9.999922e-01	k: 139996	n:140000
KS ci ratio: 2.634786e-01	ci left: 1.370758e-03	ci right 1.793174e-03	k: 220	n:140000
DCP1B   140000 perm   34 sec   (4134 perm/sec)   p_kst 1.571429e-03   p_cons 9.999714e-01   p_joint 1.571429e-03

Joint ci ratio: 2.566074e-01	ci left: 1.354158e-03	ci right 1.758834e-03	k: 232	n:150000
Cons ci ratio: 5.843591e-05	ci left: 9.999317e-01	ci right 9.999927e-01	k: 149996	n:150000
KS ci ratio: 2.566074e-01	ci left: 1.354158e-03	ci right 1.758834e-03	k: 232	n:150000
DCP1B   150000 perm   37 sec   (4061 perm/sec)   p_kst 1.546667e-03   p_cons 9.999733e-01   p_joint 1.546667e-03

Joint ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
Cons ci ratio: 5.478367e-05	ci left: 9.999360e-01	ci right 9.999932e-01	k: 159996	n:160000
KS ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
DCP1B   160000 perm   40 sec   (3993 perm/sec)   p_kst 1.525000e-03   p_cons 9.999750e-01   p_joint 1.525000e-03

Joint ci ratio: 2.424549e-01	ci left: 1.349259e-03	ci right 1.726891e-03	k: 260	n:170000
Cons ci ratio: 5.648252e-05	ci left: 9.999314e-01	ci right 9.999905e-01	k: 169995	n:170000
KS ci ratio: 2.424549e-01	ci left: 1.349259e-03	ci right 1.726891e-03	k: 260	n:170000
DCP1B   170000 perm   43 sec   (3928 perm/sec)   p_kst 1.529412e-03   p_cons 9.999706e-01   p_joint 1.529412e-03

Joint ci ratio: 2.357746e-01	ci left: 1.352642e-03	ci right 1.719268e-03	k: 275	n:180000
Cons ci ratio: 5.334459e-05	ci left: 9.999352e-01	ci right 9.999910e-01	k: 179995	n:180000
KS ci ratio: 2.357746e-01	ci left: 1.352642e-03	ci right 1.719268e-03	k: 275	n:180000
DCP1B   180000 perm   47 sec   (3862 perm/sec)   p_kst 1.527778e-03   p_cons 9.999722e-01   p_joint 1.527778e-03

Joint ci ratio: 2.312149e-01	ci left: 1.335957e-03	ci right 1.690058e-03	k: 286	n:190000
Cons ci ratio: 5.053697e-05	ci left: 9.999386e-01	ci right 9.999915e-01	k: 189995	n:190000
KS ci ratio: 2.312149e-01	ci left: 1.335957e-03	ci right 1.690058e-03	k: 286	n:190000
DCP1B   190000 perm   50 sec   (3801 perm/sec)   p_kst 1.505263e-03   p_cons 9.999737e-01   p_joint 1.505263e-03

Joint ci ratio: 2.261509e-01	ci left: 1.330436e-03	ci right 1.674273e-03	k: 299	n:200000
Cons ci ratio: 4.801012e-05	ci left: 9.999417e-01	ci right 9.999919e-01	k: 199995	n:200000
KS ci ratio: 2.261509e-01	ci left: 1.330436e-03	ci right 1.674273e-03	k: 299	n:200000
DCP1B   200000 perm   54 sec   (3738 perm/sec)   p_kst 1.495000e-03   p_cons 9.999750e-01   p_joint 1.495000e-03

Joint ci ratio: 2.189671e-01	ci left: 1.357014e-03	ci right 1.695080e-03	k: 319	n:210000
Cons ci ratio: 4.572392e-05	ci left: 9.999444e-01	ci right 9.999923e-01	k: 209995	n:210000
KS ci ratio: 2.189671e-01	ci left: 1.357014e-03	ci right 1.695080e-03	k: 319	n:210000
DCP1B   210000 perm   57 sec   (3681 perm/sec)   p_kst 1.519048e-03   p_cons 9.999762e-01   p_joint 1.519048e-03

Joint ci ratio: 2.133719e-01	ci left: 1.368422e-03	ci right 1.699480e-03	k: 336	n:220000
Cons ci ratio: 4.714269e-05	ci left: 9.999406e-01	ci right 9.999900e-01	k: 219994	n:220000
KS ci ratio: 2.133719e-01	ci left: 1.368422e-03	ci right 1.699480e-03	k: 336	n:220000
DCP1B   220000 perm   61 sec   (3624 perm/sec)   p_kst 1.527273e-03   p_cons 9.999727e-01   p_joint 1.527273e-03

Joint ci ratio: 2.096731e-01	ci left: 1.358335e-03	ci right 1.680524e-03	k: 348	n:230000
Cons ci ratio: 4.509300e-05	ci left: 9.999432e-01	ci right 9.999904e-01	k: 229994	n:230000
KS ci ratio: 2.096731e-01	ci left: 1.358335e-03	ci right 1.680524e-03	k: 348	n:230000
DCP1B   230000 perm   64 sec   (3571 perm/sec)   p_kst 1.513043e-03   p_cons 9.999739e-01   p_joint 1.513043e-03

Joint ci ratio: 2.050257e-01	ci left: 1.364943e-03	ci right 1.680625e-03	k: 364	n:240000
Cons ci ratio: 4.321412e-05	ci left: 9.999456e-01	ci right 9.999908e-01	k: 239994	n:240000
KS ci ratio: 2.050257e-01	ci left: 1.364943e-03	ci right 1.680625e-03	k: 364	n:240000
DCP1B   240000 perm   68 sec   (3516 perm/sec)   p_kst 1.516667e-03   p_cons 9.999750e-01   p_joint 1.516667e-03

Joint ci ratio: 2.022756e-01	ci left: 1.348305e-03	ci right 1.655438e-03	k: 374	n:250000
Cons ci ratio: 4.148555e-05	ci left: 9.999478e-01	ci right 9.999912e-01	k: 249994	n:250000
KS ci ratio: 2.022756e-01	ci left: 1.348305e-03	ci right 1.655438e-03	k: 374	n:250000
DCP1B   250000 perm   72 sec   (3465 perm/sec)   p_kst 1.496000e-03   p_cons 9.999760e-01   p_joint 1.496000e-03

Joint ci ratio: 1.993742e-01	ci left: 1.336626e-03	ci right 1.636201e-03	k: 385	n:260000
Cons ci ratio: 3.988994e-05	ci left: 9.999498e-01	ci right 9.999915e-01	k: 259994	n:260000
KS ci ratio: 1.993742e-01	ci left: 1.336626e-03	ci right 1.636201e-03	k: 385	n:260000
DCP1B   260000 perm   76 sec   (3415 perm/sec)   p_kst 1.480769e-03   p_cons 9.999769e-01   p_joint 1.480769e-03

Joint ci ratio: 1.958544e-01	ci left: 1.336408e-03	ci right 1.630015e-03	k: 399	n:270000
Cons ci ratio: 3.841253e-05	ci left: 9.999516e-01	ci right 9.999918e-01	k: 269994	n:270000
KS ci ratio: 1.958544e-01	ci left: 1.336408e-03	ci right 1.630015e-03	k: 399	n:270000
DCP1B   270000 perm   80 sec   (3367 perm/sec)   p_kst 1.477778e-03   p_cons 9.999778e-01   p_joint 1.477778e-03

Joint ci ratio: 1.932170e-01	ci left: 1.326051e-03	ci right 1.612998e-03	k: 410	n:280000
Cons ci ratio: 3.959819e-05	ci left: 9.999485e-01	ci right 9.999899e-01	k: 279993	n:280000
KS ci ratio: 1.932170e-01	ci left: 1.326051e-03	ci right 1.612998e-03	k: 410	n:280000
DCP1B   280000 perm   84 sec   (3320 perm/sec)   p_kst 1.464286e-03   p_cons 9.999750e-01   p_joint 1.464286e-03

Joint ci ratio: 1.895621e-01	ci left: 1.332854e-03	ci right 1.615190e-03	k: 426	n:290000
Cons ci ratio: 4.055200e-05	ci left: 9.999456e-01	ci right 9.999881e-01	k: 289992	n:290000
KS ci ratio: 1.895621e-01	ci left: 1.332854e-03	ci right 1.615190e-03	k: 426	n:290000
DCP1B   290000 perm   89 sec   (3274 perm/sec)   p_kst 1.468966e-03   p_cons 9.999724e-01   p_joint 1.468966e-03

Joint ci ratio: 1.878130e-01	ci left: 1.313832e-03	ci right 1.589277e-03	k: 434	n:300000
Cons ci ratio: 3.920026e-05	ci left: 9.999475e-01	ci right 9.999885e-01	k: 299992	n:300000
KS ci ratio: 1.878130e-01	ci left: 1.313832e-03	ci right 1.589277e-03	k: 434	n:300000
DCP1B   300000 perm   93 sec   (3230 perm/sec)   p_kst 1.446667e-03   p_cons 9.999733e-01   p_joint 1.446667e-03

Joint ci ratio: 1.842465e-01	ci left: 1.323736e-03	ci right 1.595398e-03	k: 451	n:310000
Cons ci ratio: 3.793573e-05	ci left: 9.999492e-01	ci right 9.999889e-01	k: 309992	n:310000
KS ci ratio: 1.842465e-01	ci left: 1.323736e-03	ci right 1.595398e-03	k: 451	n:310000
DCP1B   310000 perm   97 sec   (3187 perm/sec)   p_kst 1.454839e-03   p_cons 9.999742e-01   p_joint 1.454839e-03

Joint ci ratio: 1.816532e-01	ci left: 1.321133e-03	ci right 1.588026e-03	k: 464	n:320000
Cons ci ratio: 3.873820e-05	ci left: 9.999466e-01	ci right 9.999871e-01	k: 319991	n:320000
KS ci ratio: 1.816532e-01	ci left: 1.321133e-03	ci right 1.588026e-03	k: 464	n:320000
DCP1B   320000 perm   102 sec   (3143 perm/sec)   p_kst 1.450000e-03   p_cons 9.999719e-01   p_joint 1.450000e-03

Joint ci ratio: 1.801123e-01	ci left: 1.304243e-03	ci right 1.565244e-03	k: 472	n:330000
Cons ci ratio: 4.114976e-05	ci left: 9.999404e-01	ci right 9.999834e-01	k: 329989	n:330000
KS ci ratio: 1.801123e-01	ci left: 1.304243e-03	ci right 1.565244e-03	k: 472	n:330000
DCP1B   330000 perm   106 sec   (3102 perm/sec)   p_kst 1.430303e-03   p_cons 9.999667e-01   p_joint 1.430303e-03

Joint ci ratio: 1.776874e-01	ci left: 1.302406e-03	ci right 1.559154e-03	k: 485	n:340000
Cons ci ratio: 3.993947e-05	ci left: 9.999421e-01	ci right 9.999838e-01	k: 339989	n:340000
KS ci ratio: 1.776874e-01	ci left: 1.302406e-03	ci right 1.559154e-03	k: 485	n:340000
DCP1B   340000 perm   111 sec   (3062 perm/sec)   p_kst 1.426471e-03   p_cons 9.999676e-01   p_joint 1.426471e-03

Joint ci ratio: 1.755341e-01	ci left: 1.297964e-03	ci right 1.550407e-03	k: 497	n:350000
Cons ci ratio: 4.038264e-05	ci left: 9.999401e-01	ci right 9.999823e-01	k: 349988	n:350000
KS ci ratio: 1.755341e-01	ci left: 1.297964e-03	ci right 1.550407e-03	k: 497	n:350000
DCP1B   350000 perm   116 sec   (3022 perm/sec)   p_kst 1.420000e-03   p_cons 9.999657e-01   p_joint 1.420000e-03

Joint ci ratio: 1.731177e-01	ci left: 1.299102e-03	ci right 1.547924e-03	k: 511	n:360000
Cons ci ratio: 3.926088e-05	ci left: 9.999418e-01	ci right 9.999828e-01	k: 359988	n:360000
KS ci ratio: 1.731177e-01	ci left: 1.299102e-03	ci right 1.547924e-03	k: 511	n:360000
DCP1B   360000 perm   121 sec   (2986 perm/sec)   p_kst 1.419444e-03   p_cons 9.999667e-01   p_joint 1.419444e-03

Joint ci ratio: 1.707984e-01	ci left: 1.300200e-03	ci right 1.545553e-03	k: 525	n:370000
Cons ci ratio: 3.819977e-05	ci left: 9.999433e-01	ci right 9.999832e-01	k: 369988	n:370000
KS ci ratio: 1.707984e-01	ci left: 1.300200e-03	ci right 1.545553e-03	k: 525	n:370000
DCP1B   370000 perm   125 sec   (2951 perm/sec)   p_kst 1.418919e-03   p_cons 9.999676e-01   p_joint 1.418919e-03

Joint ci ratio: 1.688833e-01	ci left: 1.296221e-03	ci right 1.537800e-03	k: 537	n:380000
Cons ci ratio: 3.859861e-05	ci left: 9.999415e-01	ci right 9.999818e-01	k: 379987	n:380000
KS ci ratio: 1.688833e-01	ci left: 1.296221e-03	ci right 1.537800e-03	k: 537	n:380000
DCP1B   380000 perm   130 sec   (2914 perm/sec)   p_kst 1.413158e-03   p_cons 9.999658e-01   p_joint 1.413158e-03

Joint ci ratio: 1.668794e-01	ci left: 1.294917e-03	ci right 1.533102e-03	k: 550	n:390000
Cons ci ratio: 3.760889e-05	ci left: 9.999430e-01	ci right 9.999823e-01	k: 389987	n:390000
KS ci ratio: 1.668794e-01	ci left: 1.294917e-03	ci right 1.533102e-03	k: 550	n:390000
DCP1B   390000 perm   135 sec   (2880 perm/sec)   p_kst 1.410256e-03   p_cons 9.999667e-01   p_joint 1.410256e-03

Joint ci ratio: 1.649452e-01	ci left: 1.293695e-03	ci right 1.528623e-03	k: 563	n:400000
Cons ci ratio: 3.795571e-05	ci left: 9.999413e-01	ci right 9.999809e-01	k: 399986	n:400000
KS ci ratio: 1.649452e-01	ci left: 1.293695e-03	ci right 1.528623e-03	k: 563	n:400000
DCP1B   400000 perm   141 sec   (2846 perm/sec)   p_kst 1.407500e-03   p_cons 9.999650e-01   p_joint 1.407500e-03

Joint ci ratio: 1.633604e-01	ci left: 1.287868e-03	ci right 1.519271e-03	k: 574	n:410000
Cons ci ratio: 3.702995e-05	ci left: 9.999427e-01	ci right 9.999813e-01	k: 409986	n:410000
KS ci ratio: 1.633604e-01	ci left: 1.287868e-03	ci right 1.519271e-03	k: 574	n:410000
DCP1B   410000 perm   146 sec   (2815 perm/sec)   p_kst 1.400000e-03   p_cons 9.999659e-01   p_joint 1.400000e-03

Joint ci ratio: 1.612703e-01	ci left: 1.291468e-03	ci right 1.520261e-03	k: 589	n:420000
Cons ci ratio: 3.733382e-05	ci left: 9.999411e-01	ci right 9.999800e-01	k: 419985	n:420000
KS ci ratio: 1.612703e-01	ci left: 1.291468e-03	ci right 1.520261e-03	k: 589	n:420000
DCP1B   420000 perm   151 sec   (2778 perm/sec)   p_kst 1.402381e-03   p_cons 9.999643e-01   p_joint 1.402381e-03

Joint ci ratio: 1.592583e-01	ci left: 1.294919e-03	ci right 1.521188e-03	k: 604	n:430000
Cons ci ratio: 3.758791e-05	ci left: 9.999396e-01	ci right 9.999787e-01	k: 429984	n:430000
KS ci ratio: 1.592583e-01	ci left: 1.294919e-03	ci right 1.521188e-03	k: 604	n:430000
DCP1B   430000 perm   157 sec   (2747 perm/sec)   p_kst 1.404651e-03   p_cons 9.999628e-01   p_joint 1.404651e-03

Joint ci ratio: 1.580877e-01	ci left: 1.285131e-03	ci right 1.507882e-03	k: 613	n:440000
Cons ci ratio: 3.673362e-05	ci left: 9.999409e-01	ci right 9.999792e-01	k: 439984	n:440000
KS ci ratio: 1.580877e-01	ci left: 1.285131e-03	ci right 1.507882e-03	k: 613	n:440000
DCP1B   440000 perm   162 sec   (2716 perm/sec)   p_kst 1.393182e-03   p_cons 9.999636e-01   p_joint 1.393182e-03

Joint ci ratio: 1.569426e-01	ci left: 1.275783e-03	ci right 1.495162e-03	k: 622	n:450000
Cons ci ratio: 3.591731e-05	ci left: 9.999423e-01	ci right 9.999797e-01	k: 449984	n:450000
KS ci ratio: 1.569426e-01	ci left: 1.275783e-03	ci right 1.495162e-03	k: 622	n:450000
DCP1B   450000 perm   168 sec   (2687 perm/sec)   p_kst 1.382222e-03   p_cons 9.999644e-01   p_joint 1.382222e-03

Joint ci ratio: 1.546019e-01	ci left: 1.287744e-03	ci right 1.505570e-03	k: 641	n:460000
Cons ci ratio: 3.513649e-05	ci left: 9.999435e-01	ci right 9.999801e-01	k: 459984	n:460000
KS ci ratio: 1.546019e-01	ci left: 1.287744e-03	ci right 1.505570e-03	k: 641	n:460000
DCP1B   460000 perm   173 sec   (2658 perm/sec)   p_kst 1.393478e-03   p_cons 9.999652e-01   p_joint 1.393478e-03

Joint ci ratio: 1.527103e-01	ci left: 1.293079e-03	ci right 1.508887e-03	k: 657	n:470000
Cons ci ratio: 3.438889e-05	ci left: 9.999447e-01	ci right 9.999805e-01	k: 469984	n:470000
KS ci ratio: 1.527103e-01	ci left: 1.293079e-03	ci right 1.508887e-03	k: 657	n:470000
DCP1B   470000 perm   179 sec   (2629 perm/sec)   p_kst 1.397872e-03   p_cons 9.999660e-01   p_joint 1.397872e-03

Joint ci ratio: 1.503292e-01	ci left: 1.308232e-03	ci right 1.522859e-03	k: 678	n:480000
Cons ci ratio: 3.367245e-05	ci left: 9.999459e-01	ci right 9.999809e-01	k: 479984	n:480000
KS ci ratio: 1.503292e-01	ci left: 1.308232e-03	ci right 1.522859e-03	k: 678	n:480000
DCP1B   480000 perm   185 sec   (2601 perm/sec)   p_kst 1.412500e-03   p_cons 9.999667e-01   p_joint 1.412500e-03

Joint ci ratio: 1.494523e-01	ci left: 1.297247e-03	ci right 1.508719e-03	k: 686	n:490000
Cons ci ratio: 3.394158e-05	ci left: 9.999445e-01	ci right 9.999798e-01	k: 489983	n:490000
KS ci ratio: 1.494523e-01	ci left: 1.297247e-03	ci right 1.508719e-03	k: 686	n:490000
DCP1B   490000 perm   190 sec   (2574 perm/sec)   p_kst 1.400000e-03   p_cons 9.999653e-01   p_joint 1.400000e-03

Joint ci ratio: 1.476364e-01	ci left: 1.304039e-03	ci right 1.513807e-03	k: 703	n:500000
Cons ci ratio: 3.326274e-05	ci left: 9.999456e-01	ci right 9.999802e-01	k: 499983	n:500000
KS ci ratio: 1.476364e-01	ci left: 1.304039e-03	ci right 1.513807e-03	k: 703	n:500000
DCP1B   500000 perm   196 sec   (2547 perm/sec)   p_kst 1.406000e-03   p_cons 9.999660e-01   p_joint 1.406000e-03

Joint ci ratio: 1.467024e-01	ci left: 1.295466e-03	ci right 1.502421e-03	k: 712	n:510000
Cons ci ratio: 3.350415e-05	ci left: 9.999442e-01	ci right 9.999791e-01	k: 509982	n:510000
KS ci ratio: 1.467024e-01	ci left: 1.295466e-03	ci right 1.502421e-03	k: 712	n:510000
DCP1B   510000 perm   202 sec   (2521 perm/sec)   p_kst 1.396078e-03   p_cons 9.999647e-01   p_joint 1.396078e-03

Joint ci ratio: 1.447852e-01	ci left: 1.305760e-03	ci right 1.511398e-03	k: 731	n:520000
Cons ci ratio: 3.285983e-05	ci left: 9.999453e-01	ci right 9.999795e-01	k: 519982	n:520000
KS ci ratio: 1.447852e-01	ci left: 1.305760e-03	ci right 1.511398e-03	k: 731	n:520000
DCP1B   520000 perm   208 sec   (2495 perm/sec)   p_kst 1.405769e-03   p_cons 9.999654e-01   p_joint 1.405769e-03

Joint ci ratio: 1.438068e-01	ci left: 1.299309e-03	ci right 1.502430e-03	k: 741	n:530000
Cons ci ratio: 3.307740e-05	ci left: 9.999440e-01	ci right 9.999784e-01	k: 529981	n:530000
KS ci ratio: 1.438068e-01	ci left: 1.299309e-03	ci right 1.502430e-03	k: 741	n:530000
DCP1B   530000 perm   215 sec   (2470 perm/sec)   p_kst 1.398113e-03   p_cons 9.999642e-01   p_joint 1.398113e-03

Joint ci ratio: 1.425635e-01	ci left: 1.298460e-03	ci right 1.499543e-03	k: 754	n:540000
Cons ci ratio: 3.246485e-05	ci left: 9.999451e-01	ci right 9.999788e-01	k: 539981	n:540000
KS ci ratio: 1.425635e-01	ci left: 1.298460e-03	ci right 1.499543e-03	k: 754	n:540000
DCP1B   540000 perm   221 sec   (2446 perm/sec)   p_kst 1.396296e-03   p_cons 9.999648e-01   p_joint 1.396296e-03

Joint ci ratio: 1.412598e-01	ci left: 1.299402e-03	ci right 1.498637e-03	k: 768	n:550000
Cons ci ratio: 3.187457e-05	ci left: 9.999461e-01	ci right 9.999792e-01	k: 549981	n:550000
KS ci ratio: 1.412598e-01	ci left: 1.299402e-03	ci right 1.498637e-03	k: 768	n:550000
DCP1B   550000 perm   227 sec   (2422 perm/sec)   p_kst 1.396364e-03   p_cons 9.999655e-01   p_joint 1.396364e-03

Joint ci ratio: 1.398126e-01	ci left: 1.303766e-03	ci right 1.501450e-03	k: 784	n:560000
Cons ci ratio: 3.130537e-05	ci left: 9.999470e-01	ci right 9.999796e-01	k: 559981	n:560000
KS ci ratio: 1.398126e-01	ci left: 1.303766e-03	ci right 1.501450e-03	k: 784	n:560000
DCP1B   560000 perm   233 sec   (2399 perm/sec)   p_kst 1.400000e-03   p_cons 9.999661e-01   p_joint 1.400000e-03

Joint ci ratio: 1.384955e-01	ci left: 1.306292e-03	ci right 1.502340e-03	k: 799	n:570000
Cons ci ratio: 3.075615e-05	ci left: 9.999479e-01	ci right 9.999799e-01	k: 569981	n:570000
KS ci ratio: 1.384955e-01	ci left: 1.306292e-03	ci right 1.502340e-03	k: 799	n:570000
DCP1B   570000 perm   240 sec   (2376 perm/sec)   p_kst 1.401754e-03   p_cons 9.999667e-01   p_joint 1.401754e-03

Joint ci ratio: 1.377236e-01	ci left: 1.298751e-03	ci right 1.492491e-03	k: 808	n:580000
Cons ci ratio: 3.022586e-05	ci left: 9.999488e-01	ci right 9.999803e-01	k: 579981	n:580000
KS ci ratio: 1.377236e-01	ci left: 1.298751e-03	ci right 1.492491e-03	k: 808	n:580000
DCP1B   580000 perm   246 sec   (2354 perm/sec)   p_kst 1.393103e-03   p_cons 9.999672e-01   p_joint 1.393103e-03

Joint ci ratio: 1.362986e-01	ci left: 1.304564e-03	ci right 1.496995e-03	k: 825	n:590000
Cons ci ratio: 2.971355e-05	ci left: 9.999497e-01	ci right 9.999806e-01	k: 589981	n:590000
KS ci ratio: 1.362986e-01	ci left: 1.304564e-03	ci right 1.496995e-03	k: 825	n:590000
DCP1B   590000 perm   253 sec   (2331 perm/sec)   p_kst 1.398305e-03   p_cons 9.999678e-01   p_joint 1.398305e-03

Joint ci ratio: 1.354004e-01	ci left: 1.300531e-03	ci right 1.491002e-03	k: 836	n:600000
Cons ci ratio: 2.921832e-05	ci left: 9.999505e-01	ci right 9.999809e-01	k: 599981	n:600000
KS ci ratio: 1.354004e-01	ci left: 1.300531e-03	ci right 1.491002e-03	k: 836	n:600000
DCP1B   600000 perm   260 sec   (2309 perm/sec)   p_kst 1.393333e-03   p_cons 9.999683e-01   p_joint 1.393333e-03

Joint ci ratio: 1.347586e-01	ci left: 1.291882e-03	ci right 1.480117e-03	k: 844	n:610000
Cons ci ratio: 2.873933e-05	ci left: 9.999514e-01	ci right 9.999812e-01	k: 609981	n:610000
KS ci ratio: 1.347586e-01	ci left: 1.291882e-03	ci right 1.480117e-03	k: 844	n:610000
DCP1B   610000 perm   267 sec   (2286 perm/sec)   p_kst 1.383607e-03   p_cons 9.999689e-01   p_joint 1.383607e-03

Joint ci ratio: 1.342046e-01	ci left: 1.281956e-03	ci right 1.467915e-03	k: 851	n:620000
Cons ci ratio: 2.827578e-05	ci left: 9.999521e-01	ci right 9.999815e-01	k: 619981	n:620000
KS ci ratio: 1.342046e-01	ci left: 1.281956e-03	ci right 1.467915e-03	k: 851	n:620000
DCP1B   620000 perm   274 sec   (2264 perm/sec)   p_kst 1.372581e-03   p_cons 9.999694e-01   p_joint 1.372581e-03

Joint ci ratio: 1.331153e-01	ci left: 1.283086e-03	ci right 1.467579e-03	k: 865	n:630000
Cons ci ratio: 2.782695e-05	ci left: 9.999529e-01	ci right 9.999818e-01	k: 629981	n:630000
KS ci ratio: 1.331153e-01	ci left: 1.283086e-03	ci right 1.467579e-03	k: 865	n:630000
DCP1B   630000 perm   281 sec   (2244 perm/sec)   p_kst 1.373016e-03   p_cons 9.999698e-01   p_joint 1.373016e-03

Joint ci ratio: 1.320522e-01	ci left: 1.284188e-03	ci right 1.467249e-03	k: 879	n:640000
Cons ci ratio: 2.806863e-05	ci left: 9.999517e-01	ci right 9.999809e-01	k: 639980	n:640000
KS ci ratio: 1.320522e-01	ci left: 1.284188e-03	ci right 1.467249e-03	k: 879	n:640000
DCP1B   640000 perm   288 sec   (2223 perm/sec)   p_kst 1.373438e-03   p_cons 9.999687e-01   p_joint 1.373438e-03

Joint ci ratio: 1.310141e-01	ci left: 1.285261e-03	ci right 1.466922e-03	k: 893	n:650000
Cons ci ratio: 2.763680e-05	ci left: 9.999525e-01	ci right 9.999812e-01	k: 649980	n:650000
KS ci ratio: 1.310141e-01	ci left: 1.285261e-03	ci right 1.466922e-03	k: 893	n:650000
DCP1B   650000 perm   295 sec   (2204 perm/sec)   p_kst 1.373846e-03   p_cons 9.999692e-01   p_joint 1.373846e-03

Joint ci ratio: 1.295012e-01	ci left: 1.296569e-03	ci right 1.477550e-03	k: 914	n:660000
Cons ci ratio: 2.721805e-05	ci left: 9.999532e-01	ci right 9.999815e-01	k: 659980	n:660000
KS ci ratio: 1.295012e-01	ci left: 1.296569e-03	ci right 1.477550e-03	k: 914	n:660000
DCP1B   660000 perm   302 sec   (2184 perm/sec)   p_kst 1.384848e-03   p_cons 9.999697e-01   p_joint 1.384848e-03

Joint ci ratio: 1.285911e-01	ci left: 1.295994e-03	ci right 1.475526e-03	k: 927	n:670000
Cons ci ratio: 2.681181e-05	ci left: 9.999539e-01	ci right 9.999818e-01	k: 669980	n:670000
KS ci ratio: 1.285911e-01	ci left: 1.295994e-03	ci right 1.475526e-03	k: 927	n:670000
DCP1B   670000 perm   310 sec   (2164 perm/sec)   p_kst 1.383582e-03   p_cons 9.999701e-01   p_joint 1.383582e-03

Joint ci ratio: 1.274289e-01	ci left: 1.301135e-03	ci right 1.479627e-03	k: 944	n:680000
Cons ci ratio: 2.641751e-05	ci left: 9.999546e-01	ci right 9.999820e-01	k: 679980	n:680000
KS ci ratio: 1.274289e-01	ci left: 1.301135e-03	ci right 1.479627e-03	k: 944	n:680000
DCP1B   680000 perm   317 sec   (2146 perm/sec)   p_kst 1.388235e-03   p_cons 9.999706e-01   p_joint 1.388235e-03

Joint ci ratio: 1.264953e-01	ci left: 1.301923e-03	ci right 1.479117e-03	k: 958	n:690000
Cons ci ratio: 2.603464e-05	ci left: 9.999552e-01	ci right 9.999823e-01	k: 689980	n:690000
KS ci ratio: 1.264953e-01	ci left: 1.301923e-03	ci right 1.479117e-03	k: 958	n:690000
DCP1B   690000 perm   324 sec   (2127 perm/sec)   p_kst 1.388406e-03   p_cons 9.999710e-01   p_joint 1.388406e-03

Joint ci ratio: 1.257114e-01	ci left: 1.299926e-03	ci right 1.475670e-03	k: 970	n:700000
Cons ci ratio: 2.566272e-05	ci left: 9.999559e-01	ci right 9.999825e-01	k: 699980	n:700000
KS ci ratio: 1.257114e-01	ci left: 1.299926e-03	ci right 1.475670e-03	k: 970	n:700000
DCP1B   700000 perm   332 sec   (2109 perm/sec)   p_kst 1.385714e-03   p_cons 9.999714e-01   p_joint 1.385714e-03

Joint ci ratio: 1.249419e-01	ci left: 1.297989e-03	ci right 1.472317e-03	k: 982	n:710000
Cons ci ratio: 2.530127e-05	ci left: 9.999565e-01	ci right 9.999828e-01	k: 709980	n:710000
KS ci ratio: 1.249419e-01	ci left: 1.297989e-03	ci right 1.472317e-03	k: 982	n:710000
DCP1B   710000 perm   340 sec   (2090 perm/sec)   p_kst 1.383099e-03   p_cons 9.999718e-01   p_joint 1.383099e-03

Joint ci ratio: 1.240616e-01	ci left: 1.298800e-03	ci right 1.471918e-03	k: 996	n:720000
Cons ci ratio: 2.494986e-05	ci left: 9.999571e-01	ci right 9.999830e-01	k: 719980	n:720000
KS ci ratio: 1.240616e-01	ci left: 1.298800e-03	ci right 1.471918e-03	k: 996	n:720000
DCP1B   720000 perm   347 sec   (2072 perm/sec)   p_kst 1.383333e-03   p_cons 9.999722e-01   p_joint 1.383333e-03

Joint ci ratio: 1.231996e-01	ci left: 1.299593e-03	ci right 1.471526e-03	k: 1010	n:730000
Cons ci ratio: 2.460807e-05	ci left: 9.999577e-01	ci right 9.999833e-01	k: 729980	n:730000
KS ci ratio: 1.231996e-01	ci left: 1.299593e-03	ci right 1.471526e-03	k: 1010	n:730000
DCP1B   730000 perm   355 sec   (2054 perm/sec)   p_kst 1.383562e-03   p_cons 9.999726e-01   p_joint 1.383562e-03

Joint ci ratio: 1.221764e-01	ci left: 1.304299e-03	ci right 1.475318e-03	k: 1027	n:740000
Cons ci ratio: 2.484681e-05	ci left: 9.999566e-01	ci right 9.999824e-01	k: 739979	n:740000
KS ci ratio: 1.221764e-01	ci left: 1.304299e-03	ci right 1.475318e-03	k: 1027	n:740000
DCP1B   740000 perm   363 sec   (2037 perm/sec)   p_kst 1.387838e-03   p_cons 9.999716e-01   p_joint 1.387838e-03

Joint ci ratio: 1.213529e-01	ci left: 1.305007e-03	ci right 1.474882e-03	k: 1041	n:750000
Cons ci ratio: 2.451552e-05	ci left: 9.999572e-01	ci right 9.999827e-01	k: 749979	n:750000
KS ci ratio: 1.213529e-01	ci left: 1.305007e-03	ci right 1.474882e-03	k: 1041	n:750000
DCP1B   750000 perm   371 sec   (2021 perm/sec)   p_kst 1.388000e-03   p_cons 9.999720e-01   p_joint 1.388000e-03

Joint ci ratio: 1.200911e-01	ci left: 1.315909e-03	ci right 1.485296e-03	k: 1063	n:760000
Cons ci ratio: 2.419294e-05	ci left: 9.999578e-01	ci right 9.999829e-01	k: 759979	n:760000
KS ci ratio: 1.200911e-01	ci left: 1.315909e-03	ci right 1.485296e-03	k: 1063	n:760000
DCP1B   760000 perm   379 sec   (2004 perm/sec)   p_kst 1.398684e-03   p_cons 9.999724e-01   p_joint 1.398684e-03

Joint ci ratio: 1.191980e-01	ci left: 1.318977e-03	ci right 1.487407e-03	k: 1079	n:770000
Cons ci ratio: 2.387874e-05	ci left: 9.999583e-01	ci right 9.999831e-01	k: 769979	n:770000
KS ci ratio: 1.191980e-01	ci left: 1.318977e-03	ci right 1.487407e-03	k: 1079	n:770000
DCP1B   770000 perm   387 sec   (1988 perm/sec)   p_kst 1.401299e-03   p_cons 9.999727e-01   p_joint 1.401299e-03

Joint ci ratio: 1.183246e-01	ci left: 1.321971e-03	ci right 1.489460e-03	k: 1095	n:780000
Cons ci ratio: 2.357260e-05	ci left: 9.999588e-01	ci right 9.999833e-01	k: 779979	n:780000
KS ci ratio: 1.183246e-01	ci left: 1.321971e-03	ci right 1.489460e-03	k: 1095	n:780000
DCP1B   780000 perm   396 sec   (1971 perm/sec)   p_kst 1.403846e-03   p_cons 9.999731e-01   p_joint 1.403846e-03

Joint ci ratio: 1.176823e-01	ci left: 1.319978e-03	ci right 1.486244e-03	k: 1107	n:790000
Cons ci ratio: 2.327421e-05	ci left: 9.999594e-01	ci right 9.999835e-01	k: 789979	n:790000
KS ci ratio: 1.176823e-01	ci left: 1.319978e-03	ci right 1.486244e-03	k: 1107	n:790000
DCP1B   790000 perm   404 sec   (1956 perm/sec)   p_kst 1.401266e-03   p_cons 9.999734e-01   p_joint 1.401266e-03

Joint ci ratio: 1.169458e-01	ci left: 1.320465e-03	ci right 1.485679e-03	k: 1121	n:800000
Cons ci ratio: 2.298328e-05	ci left: 9.999599e-01	ci right 9.999838e-01	k: 799979	n:800000
KS ci ratio: 1.169458e-01	ci left: 1.320465e-03	ci right 1.485679e-03	k: 1121	n:800000
DCP1B   800000 perm   412 sec   (1940 perm/sec)   p_kst 1.401250e-03   p_cons 9.999737e-01   p_joint 1.401250e-03

Joint ci ratio: 1.159168e-01	ci left: 1.328136e-03	ci right 1.492747e-03	k: 1141	n:810000
Cons ci ratio: 2.269953e-05	ci left: 9.999604e-01	ci right 9.999840e-01	k: 809979	n:810000
KS ci ratio: 1.159168e-01	ci left: 1.328136e-03	ci right 1.492747e-03	k: 1141	n:810000
DCP1B   810000 perm   421 sec   (1925 perm/sec)   p_kst 1.408642e-03   p_cons 9.999741e-01   p_joint 1.408642e-03

Joint ci ratio: 1.151629e-01	ci left: 1.329703e-03	ci right 1.493364e-03	k: 1156	n:820000
Cons ci ratio: 2.242271e-05	ci left: 9.999609e-01	ci right 9.999841e-01	k: 819979	n:820000
KS ci ratio: 1.151629e-01	ci left: 1.329703e-03	ci right 1.493364e-03	k: 1156	n:820000
DCP1B   820000 perm   430 sec   (1909 perm/sec)   p_kst 1.409756e-03   p_cons 9.999744e-01   p_joint 1.409756e-03

Joint ci ratio: 1.142284e-01	ci left: 1.335917e-03	ci right 1.498919e-03	k: 1175	n:830000
Cons ci ratio: 2.265044e-05	ci left: 9.999599e-01	ci right 9.999834e-01	k: 829978	n:830000
KS ci ratio: 1.142284e-01	ci left: 1.335917e-03	ci right 1.498919e-03	k: 1175	n:830000
DCP1B   830000 perm   438 sec   (1894 perm/sec)   p_kst 1.415663e-03   p_cons 9.999735e-01   p_joint 1.415663e-03

Joint ci ratio: 1.134591e-01	ci left: 1.338519e-03	ci right 1.500665e-03	k: 1191	n:840000
Cons ci ratio: 2.238079e-05	ci left: 9.999603e-01	ci right 9.999836e-01	k: 839978	n:840000
KS ci ratio: 1.134591e-01	ci left: 1.338519e-03	ci right 1.500665e-03	k: 1191	n:840000
DCP1B   840000 perm   447 sec   (1879 perm/sec)   p_kst 1.417857e-03   p_cons 9.999738e-01   p_joint 1.417857e-03

Joint ci ratio: 1.126584e-01	ci left: 1.342206e-03	ci right 1.503575e-03	k: 1208	n:850000
Cons ci ratio: 2.211748e-05	ci left: 9.999608e-01	ci right 9.999838e-01	k: 849978	n:850000
KS ci ratio: 1.126584e-01	ci left: 1.342206e-03	ci right 1.503575e-03	k: 1208	n:850000
DCP1B   850000 perm   456 sec   (1865 perm/sec)   p_kst 1.421176e-03   p_cons 9.999741e-01   p_joint 1.421176e-03

Joint ci ratio: 1.119659e-01	ci left: 1.343551e-03	ci right 1.504023e-03	k: 1223	n:860000
Cons ci ratio: 2.186030e-05	ci left: 9.999613e-01	ci right 9.999840e-01	k: 859978	n:860000
KS ci ratio: 1.119659e-01	ci left: 1.343551e-03	ci right 1.504023e-03	k: 1223	n:860000
DCP1B   860000 perm   465 sec   (1851 perm/sec)   p_kst 1.422093e-03   p_cons 9.999744e-01   p_joint 1.422093e-03

Joint ci ratio: 1.113761e-01	ci left: 1.342633e-03	ci right 1.502095e-03	k: 1236	n:870000
Cons ci ratio: 2.160903e-05	ci left: 9.999617e-01	ci right 9.999842e-01	k: 869978	n:870000
KS ci ratio: 1.113761e-01	ci left: 1.342633e-03	ci right 1.502095e-03	k: 1236	n:870000
DCP1B   870000 perm   474 sec   (1837 perm/sec)   p_kst 1.420690e-03   p_cons 9.999747e-01   p_joint 1.420690e-03

Joint ci ratio: 1.106626e-01	ci left: 1.345053e-03	ci right 1.503712e-03	k: 1252	n:880000
Cons ci ratio: 2.136347e-05	ci left: 9.999621e-01	ci right 9.999843e-01	k: 879978	n:880000
KS ci ratio: 1.106626e-01	ci left: 1.345053e-03	ci right 1.503712e-03	k: 1252	n:880000
DCP1B   880000 perm   483 sec   (1823 perm/sec)   p_kst 1.422727e-03   p_cons 9.999750e-01   p_joint 1.422727e-03

Joint ci ratio: 1.100061e-01	ci left: 1.346329e-03	ci right 1.504136e-03	k: 1267	n:890000
Cons ci ratio: 2.157776e-05	ci left: 9.999612e-01	ci right 9.999836e-01	k: 889977	n:890000
KS ci ratio: 1.100061e-01	ci left: 1.346329e-03	ci right 1.504136e-03	k: 1267	n:890000
DCP1B   890000 perm   492 sec   (1810 perm/sec)   p_kst 1.423596e-03   p_cons 9.999742e-01   p_joint 1.423596e-03

Joint ci ratio: 1.091059e-01	ci left: 1.354064e-03	ci right 1.511395e-03	k: 1288	n:900000
Cons ci ratio: 2.133800e-05	ci left: 9.999617e-01	ci right 9.999838e-01	k: 899977	n:900000
KS ci ratio: 1.091059e-01	ci left: 1.354064e-03	ci right 1.511395e-03	k: 1288	n:900000
DCP1B   900000 perm   501 sec   (1797 perm/sec)   p_kst 1.431111e-03   p_cons 9.999744e-01   p_joint 1.431111e-03

Joint ci ratio: 1.086017e-01	ci left: 1.352012e-03	ci right 1.508332e-03	k: 1300	n:910000
Cons ci ratio: 2.110352e-05	ci left: 9.999621e-01	ci right 9.999840e-01	k: 909977	n:910000
KS ci ratio: 1.086017e-01	ci left: 1.352012e-03	ci right 1.508332e-03	k: 1300	n:910000
DCP1B   910000 perm   510 sec   (1783 perm/sec)   p_kst 1.428571e-03   p_cons 9.999747e-01   p_joint 1.428571e-03

Joint ci ratio: 1.079809e-01	ci left: 1.353179e-03	ci right 1.508683e-03	k: 1315	n:920000
Cons ci ratio: 2.087413e-05	ci left: 9.999625e-01	ci right 9.999842e-01	k: 919977	n:920000
KS ci ratio: 1.079809e-01	ci left: 1.353179e-03	ci right 1.508683e-03	k: 1315	n:920000
DCP1B   920000 perm   520 sec   (1770 perm/sec)   p_kst 1.429348e-03   p_cons 9.999750e-01   p_joint 1.429348e-03

Joint ci ratio: 1.074516e-01	ci left: 1.352230e-03	ci right 1.506816e-03	k: 1328	n:930000
Cons ci ratio: 2.064967e-05	ci left: 9.999629e-01	ci right 9.999843e-01	k: 929977	n:930000
KS ci ratio: 1.074516e-01	ci left: 1.352230e-03	ci right 1.506816e-03	k: 1328	n:930000
DCP1B   930000 perm   529 sec   (1757 perm/sec)   p_kst 1.427957e-03   p_cons 9.999753e-01   p_joint 1.427957e-03

Joint ci ratio: 1.068901e-01	ci left: 1.352339e-03	ci right 1.506078e-03	k: 1342	n:940000
Cons ci ratio: 2.042999e-05	ci left: 9.999633e-01	ci right 9.999845e-01	k: 939977	n:940000
KS ci ratio: 1.068901e-01	ci left: 1.352339e-03	ci right 1.506078e-03	k: 1342	n:940000
DCP1B   940000 perm   539 sec   (1745 perm/sec)   p_kst 1.427660e-03   p_cons 9.999755e-01   p_joint 1.427660e-03

Joint ci ratio: 1.061807e-01	ci left: 1.356547e-03	ci right 1.509677e-03	k: 1360	n:950000
Cons ci ratio: 2.063180e-05	ci left: 9.999624e-01	ci right 9.999838e-01	k: 949976	n:950000
KS ci ratio: 1.061807e-01	ci left: 1.356547e-03	ci right 1.509677e-03	k: 1360	n:950000
DCP1B   950000 perm   548 sec   (1732 perm/sec)   p_kst 1.431579e-03   p_cons 9.999747e-01   p_joint 1.431579e-03

Joint ci ratio: 1.057543e-01	ci left: 1.353571e-03	ci right 1.505713e-03	k: 1371	n:960000
Cons ci ratio: 2.041688e-05	ci left: 9.999628e-01	ci right 9.999840e-01	k: 959976	n:960000
KS ci ratio: 1.057543e-01	ci left: 1.353571e-03	ci right 1.505713e-03	k: 1371	n:960000
DCP1B   960000 perm   558 sec   (1720 perm/sec)   p_kst 1.428125e-03   p_cons 9.999750e-01   p_joint 1.428125e-03

Joint ci ratio: 1.052189e-01	ci left: 1.353669e-03	ci right 1.505004e-03	k: 1385	n:970000
Cons ci ratio: 2.020639e-05	ci left: 9.999632e-01	ci right 9.999841e-01	k: 969976	n:970000
KS ci ratio: 1.052189e-01	ci left: 1.353669e-03	ci right 1.505004e-03	k: 1385	n:970000
DCP1B   970000 perm   568 sec   (1708 perm/sec)   p_kst 1.427835e-03   p_cons 9.999753e-01   p_joint 1.427835e-03

Joint ci ratio: 1.045420e-01	ci left: 1.357741e-03	ci right 1.508495e-03	k: 1403	n:980000
Cons ci ratio: 2.000020e-05	ci left: 9.999636e-01	ci right 9.999843e-01	k: 979976	n:980000
KS ci ratio: 1.045420e-01	ci left: 1.357741e-03	ci right 1.508495e-03	k: 1403	n:980000
DCP1B   980000 perm   578 sec   (1696 perm/sec)   p_kst 1.431633e-03   p_cons 9.999755e-01   p_joint 1.431633e-03

Joint ci ratio: 1.041719e-01	ci left: 1.353864e-03	ci right 1.503623e-03	k: 1413	n:990000
Cons ci ratio: 1.979818e-05	ci left: 9.999639e-01	ci right 9.999845e-01	k: 989976	n:990000
KS ci ratio: 1.041719e-01	ci left: 1.353864e-03	ci right 1.503623e-03	k: 1413	n:990000
DCP1B   990000 perm   588 sec   (1684 perm/sec)   p_kst 1.427273e-03   p_cons 9.999758e-01   p_joint 1.427273e-03

Joint ci ratio: 1.036964e-01	ci left: 1.352987e-03	ci right 1.501924e-03	k: 1426	n:1000000
Cons ci ratio: 1.960020e-05	ci left: 9.999643e-01	ci right 9.999846e-01	k: 999976	n:1000000
KS ci ratio: 1.036964e-01	ci left: 1.352987e-03	ci right 1.501924e-03	k: 1426	n:1000000
DCP1B   1000000 perm   598 sec   (1673 perm/sec)   p_kst 1.426000e-03   p_cons 9.999760e-01   p_joint 1.426000e-03

Joint ci ratio: 1.033352e-01	ci left: 1.349236e-03	ci right 1.497211e-03	k: 1436	n:1010000
Cons ci ratio: 1.979046e-05	ci left: 9.999635e-01	ci right 9.999840e-01	k: 1009975	n:1010000
KS ci ratio: 1.033352e-01	ci left: 1.349236e-03	ci right 1.497211e-03	k: 1436	n:1010000
DCP1B   1010000 perm   608 sec   (1661 perm/sec)   p_kst 1.421782e-03   p_cons 9.999752e-01   p_joint 1.421782e-03

Joint ci ratio: 1.024473e-01	ci left: 1.359888e-03	ci right 1.507673e-03	k: 1461	n:1020000
Cons ci ratio: 1.959643e-05	ci left: 9.999638e-01	ci right 9.999841e-01	k: 1019975	n:1020000
KS ci ratio: 1.024473e-01	ci left: 1.359888e-03	ci right 1.507673e-03	k: 1461	n:1020000
DCP1B   1020000 perm   618 sec   (1650 perm/sec)   p_kst 1.432353e-03   p_cons 9.999755e-01   p_joint 1.432353e-03

Joint ci ratio: 1.020296e-01	ci left: 1.358037e-03	ci right 1.504983e-03	k: 1473	n:1030000
Cons ci ratio: 1.977586e-05	ci left: 9.999630e-01	ci right 9.999835e-01	k: 1029974	n:1030000
KS ci ratio: 1.020296e-01	ci left: 1.358037e-03	ci right 1.504983e-03	k: 1473	n:1030000
DCP1B   1030000 perm   629 sec   (1639 perm/sec)   p_kst 1.430097e-03   p_cons 9.999748e-01   p_joint 1.430097e-03

Joint ci ratio: 1.015143e-01	ci left: 1.359035e-03	ci right 1.505302e-03	k: 1488	n:1040000
Cons ci ratio: 1.994512e-05	ci left: 9.999622e-01	ci right 9.999829e-01	k: 1039973	n:1040000
KS ci ratio: 1.015143e-01	ci left: 1.359035e-03	ci right 1.505302e-03	k: 1488	n:1040000
DCP1B   1040000 perm   639 sec   (1628 perm/sec)   p_kst 1.430769e-03   p_cons 9.999740e-01   p_joint 1.430769e-03

Joint ci ratio: 1.012092e-01	ci left: 1.354446e-03	ci right 1.499755e-03	k: 1497	n:1050000
Cons ci ratio: 2.010485e-05	ci left: 9.999615e-01	ci right 9.999823e-01	k: 1049972	n:1050000
KS ci ratio: 1.012092e-01	ci left: 1.354446e-03	ci right 1.499755e-03	k: 1497	n:1050000
DCP1B   1050000 perm   649 sec   (1617 perm/sec)   p_kst 1.425714e-03   p_cons 9.999733e-01   p_joint 1.425714e-03

Joint ci ratio: 1.007395e-01	ci left: 1.354542e-03	ci right 1.499147e-03	k: 1511	n:1060000
Cons ci ratio: 1.991517e-05	ci left: 9.999618e-01	ci right 9.999824e-01	k: 1059972	n:1060000
KS ci ratio: 1.007395e-01	ci left: 1.354542e-03	ci right 1.499147e-03	k: 1511	n:1060000
DCP1B   1060000 perm   660 sec   (1607 perm/sec)   p_kst 1.425472e-03   p_cons 9.999736e-01   p_joint 1.425472e-03

Joint ci ratio: 1.003752e-01	ci left: 1.351905e-03	ci right 1.495676e-03	k: 1522	n:1070000
Cons ci ratio: 2.006633e-05	ci left: 9.999611e-01	ci right 9.999818e-01	k: 1069971	n:1070000
KS ci ratio: 1.003752e-01	ci left: 1.351905e-03	ci right 1.495676e-03	k: 1522	n:1070000
DCP1B   1070000 perm   670 sec   (1596 perm/sec)   p_kst 1.422430e-03   p_cons 9.999729e-01   p_joint 1.422430e-03

Joint ci ratio: 9.985203e-02	ci left: 1.353831e-03	ci right 1.497012e-03	k: 1538	n:1080000
Cons ci ratio: 1.988053e-05	ci left: 9.999614e-01	ci right 9.999820e-01	k: 1079971	n:1080000
KS ci ratio: 9.985203e-02	ci left: 1.353831e-03	ci right 1.497012e-03	k: 1538	n:1080000
DCP1B   1080000 perm   681 sec   (1586 perm/sec)   p_kst 1.424074e-03   p_cons 9.999731e-01   p_joint 1.424074e-03

Outputting figure to mutsig2_images.part000000000047/DCP1B.2_1890_1080000_0.0014241_0.99997_0.0014241.png
                gene_name: DCP1B
               theta_stop: 0.100 
                    nperm: 1080000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.0014 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000047
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 47 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 4421871: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000048> was used as the working directory.
Started at Wed Oct 24 17:38:17 2012
Results reported at Wed Oct 24 17:51:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000048.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000048.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 48  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000048.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    825.80 sec.
    Max Memory :      5343 MB
    Max Swap   :      7726 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
48
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 48
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 48: processing genes 4253 - 4343
Calculating significance of each gene.
Using projection method.
4253	DCPS	5.953289e-01
4254	DCST1	1
4255	DCST2	1
4256	DCT	1.119278e-01
4257	DCTD	7.557525e-03
4258	DCTN1	6.485992e-01
4259	DCTN2	3.647967e-01
4260	DCTN3	1
4261	DCTN4	1
4262	DCTN5	2.112778e-01
4263	DCTN6	1
4264	DCTPP1	1
4265	DCUN1D1	2.440065e-01
4266	DCUN1D2	8.308962e-01
4267	DCUN1D3	7.236673e-02
4268	DCUN1D4	6.520420e-01
4269	DCUN1D5	1
4270	DCX	5.207899e-03
4271	DCXR	6.438841e-01
4272	DDA1	2.442936e-01
4273	DDAH1	1
4274	DDAH2	7.029165e-01
4275	DDB1	9.555959e-01
4276	DDB2	1
4277	DDC	4.296881e-01
4278	DDHD1	9.468672e-01
4279	DDHD2	1
4280	DDI1	1
4281	DDI2	1.557138e-01
4282	DDIT3	1.003116e-01
4283	DDIT4	3.069414e-01
4284	DDIT4L	1
4285	DDN	1
4286	DDO	8.207214e-01
4287	DDOST	7.890681e-01
4288	DDR1	9.926800e-01
4289	DDR2	9.831233e-01
4290	DDRGK1	7.875385e-01
4291	DDTL	1
4292	DDX1	2.823158e-01
4293	DDX10	7.005779e-01
4294	DDX11	4.718929e-01
4295	DDX17	7.225898e-01
4296	DDX18	9.360869e-01
4297	DDX19A	9.649057e-01
4298	DDX19B	9.615028e-01
4299	DDX20	9.787443e-01
4300	DDX21	9.554587e-01
4301	DDX23	9.930303e-01
4302	DDX24	9.404955e-01
4303	DDX25	6.210246e-01
4304	DDX26B	8.204251e-01
4305	DDX27	1.454903e-01
4306	DDX28	1
4307	DDX31	6.126540e-01
4308	DDX39	1
4309	DDX3X	7.190028e-01
4310	DDX3Y	1
4311	DDX4	2.909968e-01
4312	DDX41	9.826215e-01
4313	DDX42	8.765876e-01
4314	DDX43	8.807243e-01
4315	DDX46	9.952704e-01
4316	DDX47	9.392572e-01
4317	DDX49	6.044144e-01
4318	DDX5	5.062276e-01
4319	DDX50	1.239556e-01
4320	DDX51	1
4321	DDX52	5.786410e-01
4322	DDX53	6.168098e-01
4323	DDX54	9.472362e-01
4324	DDX55	8.970391e-01
4325	DDX56	9.844094e-01
4326	DDX58	1
4327	DDX59	5.016327e-01
4328	DDX6	1
4329	DDX60	9.920877e-01
4330	DDX60L	4.885746e-01
4331	DEAF1	6.610124e-01
4332	DEC1	1
4333	DECR1	7.756486e-01
4334	DECR2	1
4335	DEDD	7.159259e-01
4336	DEDD2	1
4337	DEF6	9.165429e-01
4338	DEF8	2.482028e-01
4339	DEFA1	1
4340	DEFA1B	1
4341	DEFA3	1
4342	DEFA4	1.527657e-02
4343	DEFA5	1
Done

Running MutSig 2:
Scatter job 48: processing genes 4253 - 4343
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DDX60L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
Cons ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
KS ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
DDX60L   10000 perm   4 sec   (2681 perm/sec)   p_kst 9.850000e-02   p_cons 3.563000e-01   p_joint 1.823000e-01

Joint ci ratio: 5.790922e-02	ci left: 1.809743e-01	ci right 1.918170e-01	k: 3727	n:20000
Cons ci ratio: 3.896598e-02	ci left: 3.294033e-01	ci right 3.425444e-01	k: 6719	n:20000
KS ci ratio: 8.357263e-02	ci left: 9.494340e-02	ci right 1.032736e-01	k: 1981	n:20000
DDX60L   20000 perm   13 sec   (1548 perm/sec)   p_kst 9.905000e-02   p_cons 3.359500e-01   p_joint 1.863500e-01

Outputting figure to mutsig2_images.part000000000048/DDX60L.13_5269_20000_0.09905_0.33595_0.18635.png
                gene_name: DDX60L
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
DDX27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
DDX27   10000 perm   2 sec   (4235 perm/sec)   p_kst 1.336000e-01   p_cons 7.454000e-01   p_joint 2.516000e-01

Outputting figure to mutsig2_images.part000000000048/DDX27.11_2475_10000_0.1336_0.7454_0.2516.png
                gene_name: DDX27
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
DDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
Cons ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
DDB1   10000 perm   3 sec   (3884 perm/sec)   p_kst 1.194000e-01   p_cons 3.625000e-01   p_joint 1.646000e-01

Joint ci ratio: 6.380724e-02	ci left: 1.536608e-01	ci right 1.638386e-01	k: 3174	n:20000
Cons ci ratio: 3.658031e-02	ci left: 3.580241e-01	ci right 3.714153e-01	k: 7294	n:20000
KS ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
DDB1   20000 perm   6 sec   (3554 perm/sec)   p_kst 1.297500e-01   p_cons 3.647000e-01   p_joint 1.587000e-01

Outputting figure to mutsig2_images.part000000000048/DDB1.10_3531_20000_0.12975_0.3647_0.1587.png
                gene_name: DDB1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 6 percent done.
DDX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
DDX11   10000 perm   2 sec   (4472 perm/sec)   p_kst 6.485000e-01   p_cons 9.027000e-01   p_joint 8.080000e-01

Outputting figure to mutsig2_images.part000000000048/DDX11.9_3022_10000_0.6485_0.9027_0.808.png
                gene_name: DDX11
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 8 percent done.
DCTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.849773e-02	ci left: 8.101938e-01	ci right 8.254206e-01	k: 8179	n:10000
KS ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
DCTN1   10000 perm   3 sec   (3601 perm/sec)   p_kst 7.287000e-01   p_cons 8.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DCTN1.8_3977_10000_0.7287_0.8179_1.png
                gene_name: DCTN1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
DDI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
Cons ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
KS ci ratio: 1.525594e-02	ci left: 8.617190e-01	ci right 8.750656e-01	k: 8685	n:10000
DDI1   10000 perm   2 sec   (5520 perm/sec)   p_kst 8.685000e-01   p_cons 6.674000e-01   p_joint 7.881000e-01

Outputting figure to mutsig2_images.part000000000048/DDI1.8_1195_10000_0.8685_0.6674_0.7881.png
                gene_name: DDI1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 11 percent done.
DDX23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
Cons ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
KS ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
DDX23   10000 perm   3 sec   (3846 perm/sec)   p_kst 5.665000e-01   p_cons 8.573000e-01   p_joint 7.684000e-01

Outputting figure to mutsig2_images.part000000000048/DDX23.8_2527_10000_0.5665_0.8573_0.7684.png
                gene_name: DDX23
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 13 percent done.
DCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
Cons ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
KS ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
DCT   10000 perm   2 sec   (5383 perm/sec)   p_kst 1.281000e-01   p_cons 2.633000e-01   p_joint 1.924000e-01

Joint ci ratio: 8.347916e-02	ci left: 9.513965e-02	ci right 1.034773e-01	k: 1985	n:20000
Cons ci ratio: 4.541590e-02	ci left: 2.651961e-01	ci right 2.775704e-01	k: 5427	n:20000
KS ci ratio: 7.425455e-02	ci left: 1.177403e-01	ci right 1.268698e-01	k: 2445	n:20000
DCT   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.222500e-01   p_cons 2.713500e-01   p_joint 9.925000e-02

Outputting figure to mutsig2_images.part000000000048/DCT.7_1699_20000_0.12225_0.27135_0.09925.png
                gene_name: DCT
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 15 percent done.
DCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
KS ci ratio: 1.853496e-02	ci left: 8.095843e-01	ci right 8.248305e-01	k: 8173	n:10000
DCX   10000 perm   2 sec   (5187 perm/sec)   p_kst 8.173000e-01   p_cons 2.685000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000048/DCX.7_1369_10000_0.8173_0.2685_0.7442.png
                gene_name: DCX
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 17 percent done.
DDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
DDR2   10000 perm   2 sec   (4660 perm/sec)   p_kst 6.296000e-01   p_cons 1.190000e-02   p_joint 6.860000e-02

Joint ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
Cons ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
KS ci ratio: 2.111166e-02	ci left: 6.261256e-01	ci right 6.395357e-01	k: 12657	n:20000
DDR2   20000 perm   5 sec   (4178 perm/sec)   p_kst 6.328500e-01   p_cons 1.460000e-02   p_joint 6.975000e-02

Joint ci ratio: 8.326194e-02	ci left: 6.592830e-02	ci right 7.168887e-02	k: 2063	n:30000
Cons ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
KS ci ratio: 1.729787e-02	ci left: 6.257446e-01	ci right 6.366966e-01	k: 18937	n:30000
DDR2   30000 perm   8 sec   (3823 perm/sec)   p_kst 6.312333e-01   p_cons 1.380000e-02   p_joint 6.876667e-02

Joint ci ratio: 5.483773e-02	ci left: 1.101601e-01	ci right 1.163962e-01	k: 4530	n:40000
Cons ci ratio: 1.610203e-01	ci left: 1.342339e-02	ci right 1.579784e-02	k: 583	n:40000
KS ci ratio: 1.500815e-02	ci left: 6.256228e-01	ci right 6.351083e-01	k: 25215	n:40000
DDR2   40000 perm   11 sec   (3756 perm/sec)   p_kst 6.303750e-01   p_cons 1.457500e-02   p_joint 1.132500e-01

Joint ci ratio: 5.730391e-02	ci left: 8.312236e-02	ci right 8.804588e-02	k: 4278	n:50000
Cons ci ratio: 1.470134e-01	ci left: 1.298846e-02	ci right 1.506853e-02	k: 700	n:50000
KS ci ratio: 1.342937e-02	ci left: 6.259311e-01	ci right 6.344138e-01	k: 31509	n:50000
DDR2   50000 perm   14 sec   (3690 perm/sec)   p_kst 6.301800e-01   p_cons 1.400000e-02   p_joint 8.556000e-02

Joint ci ratio: 5.859400e-02	ci left: 6.737908e-02	ci right 7.146269e-02	k: 4164	n:60000
Cons ci ratio: 1.335778e-01	ci left: 1.320405e-02	ci right 1.511003e-02	k: 848	n:60000
KS ci ratio: 1.225485e-02	ci left: 6.264730e-01	ci right 6.342144e-01	k: 37821	n:60000
DDR2   60000 perm   17 sec   (3628 perm/sec)   p_kst 6.303500e-01   p_cons 1.413333e-02   p_joint 6.940000e-02

Joint ci ratio: 4.970560e-02	ci left: 7.956814e-02	ci right 8.363805e-02	k: 5711	n:70000
Cons ci ratio: 1.243393e-01	ci left: 1.312883e-02	ci right 1.488322e-02	k: 979	n:70000
KS ci ratio: 1.131957e-02	ci left: 6.278423e-01	ci right 6.350039e-01	k: 44200	n:70000
DDR2   70000 perm   20 sec   (3566 perm/sec)   p_kst 6.314286e-01   p_cons 1.398571e-02   p_joint 8.158571e-02

Joint ci ratio: 4.651089e-02	ci left: 7.965012e-02	ci right 8.345529e-02	k: 6523	n:80000
Cons ci ratio: 1.163616e-01	ci left: 1.317298e-02	ci right 1.481255e-02	k: 1118	n:80000
KS ci ratio: 1.057949e-02	ci left: 6.284718e-01	ci right 6.351686e-01	k: 50546	n:80000
DDR2   80000 perm   23 sec   (3502 perm/sec)   p_kst 6.318250e-01   p_cons 1.397500e-02   p_joint 8.153750e-02

Joint ci ratio: 4.164812e-02	ci left: 8.774175e-02	ci right 9.148474e-02	k: 8064	n:90000
Cons ci ratio: 1.096130e-01	ci left: 1.324255e-02	ci right 1.478901e-02	k: 1260	n:90000
KS ci ratio: 9.974512e-03	ci left: 6.286614e-01	ci right 6.349745e-01	k: 56864	n:90000
DDR2   90000 perm   26 sec   (3447 perm/sec)   p_kst 6.318222e-01   p_cons 1.400000e-02   p_joint 8.960000e-02

Joint ci ratio: 3.846632e-02	ci left: 9.226745e-02	ci right 9.589614e-02	k: 9407	n:100000
Cons ci ratio: 1.036924e-01	ci left: 1.335887e-02	ci right 1.482951e-02	k: 1408	n:100000
KS ci ratio: 9.461691e-03	ci left: 6.288720e-01	ci right 6.348604e-01	k: 63187	n:100000
DDR2   100000 perm   29 sec   (3396 perm/sec)   p_kst 6.318700e-01   p_cons 1.408000e-02   p_joint 9.407000e-02

Joint ci ratio: 3.721006e-02	ci left: 8.993763e-02	ci right 9.335666e-02	k: 10080	n:110000
Cons ci ratio: 9.883134e-02	ci left: 1.340267e-02	ci right 1.480494e-02	k: 1550	n:110000
KS ci ratio: 9.029257e-03	ci left: 6.286049e-01	ci right 6.343155e-01	k: 69461	n:110000
DDR2   110000 perm   33 sec   (3344 perm/sec)   p_kst 6.314636e-01   p_cons 1.409091e-02   p_joint 9.163636e-02

Outputting figure to mutsig2_images.part000000000048/DDR2.7_2632_110000_0.63146_0.014091_0.091636.png
                gene_name: DDR2
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.093 

Current progress: 19 percent done.
DDX26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
Cons ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
DDX26B   10000 perm   2 sec   (4628 perm/sec)   p_kst 2.843000e-01   p_cons 7.460000e-02   p_joint 1.322000e-01

Joint ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
Cons ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
KS ci ratio: 4.355601e-02	ci left: 2.819290e-01	ci right 2.945326e-01	k: 5764	n:20000
DDX26B   20000 perm   5 sec   (4170 perm/sec)   p_kst 2.882000e-01   p_cons 7.925000e-02   p_joint 1.236500e-01

Outputting figure to mutsig2_images.part000000000048/DDX26B.7_2654_20000_0.2882_0.07925_0.12365.png
                gene_name: DDX26B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 21 percent done.
DDX60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
Cons ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
KS ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
DDX60   10000 perm   3 sec   (3627 perm/sec)   p_kst 4.500000e-01   p_cons 8.874000e-01   p_joint 7.156000e-01

Outputting figure to mutsig2_images.part000000000048/DDX60.7_5287_10000_0.45_0.8874_0.7156.png
                gene_name: DDX60
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 23 percent done.
DDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
Cons ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
KS ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
DDC   10000 perm   2 sec   (4874 perm/sec)   p_kst 2.462000e-01   p_cons 1.559000e-01   p_joint 2.123000e-01

Outputting figure to mutsig2_images.part000000000048/DDC.6_1495_10000_0.2462_0.1559_0.2123.png
                gene_name: DDC
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 25 percent done.
DDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
KS ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
DDX4   10000 perm   2 sec   (5070 perm/sec)   p_kst 3.227000e-01   p_cons 8.247000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000048/DDX4.6_2300_10000_0.3227_0.8247_0.4576.png
                gene_name: DDX4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 26 percent done.
DDX50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
DDX50   10000 perm   2 sec   (4777 perm/sec)   p_kst 2.721000e-01   p_cons 1.623000e-01   p_joint 2.275000e-01

Outputting figure to mutsig2_images.part000000000048/DDX50.6_2274_10000_0.2721_0.1623_0.2275.png
                gene_name: DDX50
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 28 percent done.
DEF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
DEF8   10000 perm   2 sec   (4218 perm/sec)   p_kst 1.006000e-01   p_cons 3.652000e-01   p_joint 2.219000e-01

Joint ci ratio: 6.620319e-02	ci left: 1.441899e-01	ci right 1.541124e-01	k: 2982	n:20000
Cons ci ratio: 3.703857e-02	ci left: 3.522978e-01	ci right 3.656432e-01	k: 7179	n:20000
KS ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
DEF8   20000 perm   5 sec   (4126 perm/sec)   p_kst 1.048500e-01   p_cons 3.589500e-01   p_joint 1.491000e-01

Outputting figure to mutsig2_images.part000000000048/DEF8.6_1667_20000_0.10485_0.35895_0.1491.png
                gene_name: DEF8
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 30 percent done.
DCTD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376352e-02	ci left: 8.840108e-01	ci right 8.963609e-01	k: 8903	n:10000
Cons ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
KS ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
DCTD   10000 perm   2 sec   (4522 perm/sec)   p_kst 7.221000e-01   p_cons 3.880000e-01   p_joint 8.903000e-01

Outputting figure to mutsig2_images.part000000000048/DCTD.5_594_10000_0.7221_0.388_0.8903.png
                gene_name: DCTD
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 32 percent done.
DCUN1D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.494822e-02	ci left: 7.027112e-01	ci right 7.205654e-01	k: 7117	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 1.125544e-02	ci left: 9.185285e-01	ci right 9.290230e-01	k: 9239	n:10000
DCUN1D3   10000 perm   2 sec   (5455 perm/sec)   p_kst 9.239000e-01   p_cons 3.226000e-01   p_joint 7.117000e-01

Outputting figure to mutsig2_images.part000000000048/DCUN1D3.5_923_10000_0.9239_0.3226_0.7117.png
                gene_name: DCUN1D3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 34 percent done.
DDHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.902015e-02	ci left: 2.969755e-01	ci right 3.151376e-01	k: 3060	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
DDHD2   10000 perm   3 sec   (3780 perm/sec)   p_kst 2.179000e-01   p_cons 6.575000e-01   p_joint 3.060000e-01

Outputting figure to mutsig2_images.part000000000048/DDHD2.5_2262_10000_0.2179_0.6575_0.306.png
                gene_name: DDHD2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 36 percent done.
DDI2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
Cons ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
KS ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
DDI2   10000 perm   2 sec   (5692 perm/sec)   p_kst 1.849000e-01   p_cons 1.127000e-01   p_joint 7.407000e-01

Joint ci ratio: 4.804163e-02	ci left: 2.437130e-01	ci right 2.557599e-01	k: 4994	n:20000
Cons ci ratio: 7.836327e-02	ci left: 1.068256e-01	ci right 1.155878e-01	k: 2223	n:20000
KS ci ratio: 5.570643e-02	ci left: 1.928922e-01	ci right 2.039956e-01	k: 3968	n:20000
DDI2   20000 perm   4 sec   (4941 perm/sec)   p_kst 1.984000e-01   p_cons 1.111500e-01   p_joint 2.497000e-01

Outputting figure to mutsig2_images.part000000000048/DDI2.4_1236_20000_0.1984_0.11115_0.2497.png
                gene_name: DDI2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 38 percent done.
DDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
KS ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
DDR1   10000 perm   3 sec   (3531 perm/sec)   p_kst 2.930000e-02   p_cons 1.419000e-01   p_joint 4.990000e-02

Joint ci ratio: 1.239162e-01	ci left: 4.469010e-02	ci right 5.064229e-02	k: 952	n:20000
Cons ci ratio: 6.826001e-02	ci left: 1.366970e-01	ci right 1.464075e-01	k: 2830	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
DDR1   20000 perm   6 sec   (3204 perm/sec)   p_kst 2.785000e-02   p_cons 1.415000e-01   p_joint 4.760000e-02

Joint ci ratio: 1.377061e-01	ci left: 2.448627e-02	ci right 2.813957e-02	k: 788	n:30000
Cons ci ratio: 5.770850e-02	ci left: 1.294398e-01	ci right 1.371647e-01	k: 3998	n:30000
KS ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
DDR1   30000 perm   10 sec   (3079 perm/sec)   p_kst 2.830000e-02   p_cons 1.332667e-01   p_joint 2.626667e-02

Joint ci ratio: 1.875776e-01	ci left: 9.786385e-03	ci right 1.183556e-02	k: 431	n:40000
Cons ci ratio: 5.139329e-02	ci left: 1.237021e-01	ci right 1.302521e-01	k: 5078	n:40000
KS ci ratio: 1.161211e-01	ci left: 2.608930e-02	ci right 2.932975e-02	k: 1107	n:40000
DDR1   40000 perm   13 sec   (3071 perm/sec)   p_kst 2.767500e-02   p_cons 1.269500e-01   p_joint 1.077500e-02

Joint ci ratio: 1.204004e-01	ci left: 1.950873e-02	ci right 2.202734e-02	k: 1037	n:50000
Cons ci ratio: 4.585911e-02	ci left: 1.245684e-01	ci right 1.304349e-01	k: 6374	n:50000
KS ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
DDR1   50000 perm   16 sec   (3153 perm/sec)   p_kst 2.794000e-02   p_cons 1.274800e-01   p_joint 2.074000e-02

Joint ci ratio: 9.501887e-02	ci left: 2.627115e-02	ci right 2.890814e-02	k: 1654	n:60000
Cons ci ratio: 3.977112e-02	ci left: 1.365716e-01	ci right 1.421300e-01	k: 8360	n:60000
KS ci ratio: 9.454990e-02	ci left: 2.653167e-02	ci right 2.918093e-02	k: 1670	n:60000
DDR1   60000 perm   19 sec   (3192 perm/sec)   p_kst 2.783333e-02   p_cons 1.393333e-01   p_joint 2.756667e-02

Outputting figure to mutsig2_images.part000000000048/DDR1.5_2828_60000_0.027833_0.13933_0.027567.png
                gene_name: DDR1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 40 percent done.
DDX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
KS ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
DDX1   10000 perm   2 sec   (4760 perm/sec)   p_kst 9.715000e-01   p_cons 7.158000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX1.5_2327_10000_0.9715_0.7158_1.png
                gene_name: DDX1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
DDX43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
Cons ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
KS ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
DDX43   10000 perm   2 sec   (4488 perm/sec)   p_kst 6.140000e-01   p_cons 7.802000e-01   p_joint 7.465000e-01

Outputting figure to mutsig2_images.part000000000048/DDX43.5_2011_10000_0.614_0.7802_0.7465.png
                gene_name: DDX43
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 43 percent done.
DDIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
DDIT3   10000 perm   2 sec   (6504 perm/sec)   p_kst 7.720000e-02   p_cons 6.221000e-01   p_joint 9.490000e-02

Joint ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
Cons ci ratio: 2.178687e-02	ci left: 6.113248e-01	ci right 6.248409e-01	k: 12362	n:20000
KS ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
DDIT3   20000 perm   4 sec   (5654 perm/sec)   p_kst 7.275000e-02   p_cons 6.181000e-01   p_joint 8.675000e-02

Outputting figure to mutsig2_images.part000000000048/DDIT3.4_518_20000_0.07275_0.6181_0.08675.png
                gene_name: DDIT3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 45 percent done.
DDX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
DDX10   10000 perm   2 sec   (4884 perm/sec)   p_kst 7.101000e-01   p_cons 5.257000e-01   p_joint 9.907000e-01

Outputting figure to mutsig2_images.part000000000048/DDX10.4_2700_10000_0.7101_0.5257_0.9907.png
                gene_name: DDX10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 47 percent done.
DDX31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
DDX31   10000 perm   2 sec   (4992 perm/sec)   p_kst 1.059000e-01   p_cons 5.230000e-01   p_joint 1.630000e-01

Joint ci ratio: 5.396467e-02	ci left: 2.030856e-01	ci right 2.143992e-01	k: 4174	n:20000
Cons ci ratio: 2.665061e-02	ci left: 5.126484e-01	ci right 5.265459e-01	k: 10392	n:20000
KS ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
DDX31   20000 perm   5 sec   (4393 perm/sec)   p_kst 1.119000e-01   p_cons 5.196000e-01   p_joint 2.087000e-01

Outputting figure to mutsig2_images.part000000000048/DDX31.4_2643_20000_0.1119_0.5196_0.2087.png
                gene_name: DDX31
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 49 percent done.
DDX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
Cons ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
KS ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
DDX5   10000 perm   2 sec   (5138 perm/sec)   p_kst 4.077000e-01   p_cons 3.709000e-01   p_joint 4.317000e-01

Outputting figure to mutsig2_images.part000000000048/DDX5.4_1897_10000_0.4077_0.3709_0.4317.png
                gene_name: DDX5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 51 percent done.
DCST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.110698e-02	ci left: 1.490372e-01	ci right 1.633637e-01	k: 1561	n:10000
Cons ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
KS ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
DCST1   10000 perm   2 sec   (5380 perm/sec)   p_kst 2.781000e-01   p_cons 1.192000e-01   p_joint 1.561000e-01

Joint ci ratio: 8.744546e-02	ci left: 8.729371e-02	ci right 9.532556e-02	k: 1825	n:20000
Cons ci ratio: 7.401342e-02	ci left: 1.184290e-01	ci right 1.275809e-01	k: 2459	n:20000
KS ci ratio: 4.436035e-02	ci left: 2.745295e-01	ci right 2.870343e-01	k: 5615	n:20000
DCST1   20000 perm   4 sec   (4737 perm/sec)   p_kst 2.807500e-01   p_cons 1.229500e-01   p_joint 9.125000e-02

Outputting figure to mutsig2_images.part000000000048/DCST1.3_2185_20000_0.28075_0.12295_0.09125.png
                gene_name: DCST1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 53 percent done.
DCTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
KS ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
DCTN2   10000 perm   2 sec   (5847 perm/sec)   p_kst 5.015000e-01   p_cons 9.862000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DCTN2.3_1263_10000_0.5015_0.9862_1.png
                gene_name: DCTN2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
DCUN1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
Cons ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
KS ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
DCUN1D1   10000 perm   2 sec   (5833 perm/sec)   p_kst 6.065000e-01   p_cons 1.492000e-01   p_joint 9.329000e-01

Outputting figure to mutsig2_images.part000000000048/DCUN1D1.3_808_10000_0.6065_0.1492_0.9329.png
                gene_name: DCUN1D1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 57 percent done.
DDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
DDHD1   10000 perm   2 sec   (5117 perm/sec)   p_kst 5.635000e-01   p_cons 4.908000e-01   p_joint 6.288000e-01

Outputting figure to mutsig2_images.part000000000048/DDHD1.3_2780_10000_0.5635_0.4908_0.6288.png
                gene_name: DDHD1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 58 percent done.
DDO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
DDO   10000 perm   2 sec   (5960 perm/sec)   p_kst 8.549000e-01   p_cons 5.800000e-02   p_joint 2.209000e-01

Joint ci ratio: 4.822177e-02	ci left: 2.423244e-01	ci right 2.543488e-01	k: 4966	n:20000
Cons ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
KS ci ratio: 1.145477e-02	ci left: 8.491819e-01	ci right 8.590149e-01	k: 17083	n:20000
DDO   20000 perm   4 sec   (5155 perm/sec)   p_kst 8.541500e-01   p_cons 6.185000e-02   p_joint 2.483000e-01

Joint ci ratio: 4.981352e-02	ci left: 1.668208e-01	ci right 1.753763e-01	k: 5132	n:30000
Cons ci ratio: 8.456727e-02	ci left: 6.400009e-02	ci right 6.968414e-02	k: 2004	n:30000
KS ci ratio: 9.403179e-03	ci left: 8.487399e-01	ci right 8.567916e-01	k: 25584	n:30000
DDO   30000 perm   6 sec   (4892 perm/sec)   p_kst 8.528000e-01   p_cons 6.680000e-02   p_joint 1.710667e-01

Outputting figure to mutsig2_images.part000000000048/DDO.3_1130_30000_0.8528_0.0668_0.17107.png
                gene_name: DDO
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
DDX17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
KS ci ratio: 2.510632e-02	ci left: 7.000883e-01	ci right 7.179898e-01	k: 7091	n:10000
DDX17   10000 perm   2 sec   (5298 perm/sec)   p_kst 7.091000e-01   p_cons 6.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX17.3_2248_10000_0.7091_0.6127_1.png
                gene_name: DDX17
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
DDX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
DDX18   10000 perm   2 sec   (5662 perm/sec)   p_kst 7.240000e-01   p_cons 3.835000e-01   p_joint 6.909000e-01

Outputting figure to mutsig2_images.part000000000048/DDX18.3_2069_10000_0.724_0.3835_0.6909.png
                gene_name: DDX18
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 64 percent done.
DDX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
DDX21   10000 perm   2 sec   (5197 perm/sec)   p_kst 6.213000e-01   p_cons 1.248000e-01   p_joint 4.727000e-01

Joint ci ratio: 3.045643e-02	ci left: 4.460834e-01	ci right 4.599303e-01	k: 9060	n:20000
Cons ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
KS ci ratio: 2.187695e-02	ci left: 6.093686e-01	ci right 6.228977e-01	k: 12323	n:20000
DDX21   20000 perm   5 sec   (4161 perm/sec)   p_kst 6.161500e-01   p_cons 1.194000e-01   p_joint 4.530000e-01

Outputting figure to mutsig2_images.part000000000048/DDX21.3_2412_20000_0.61615_0.1194_0.453.png
                gene_name: DDX21
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 66 percent done.
DDX3X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
Cons ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
KS ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
DDX3X   10000 perm   2 sec   (5633 perm/sec)   p_kst 3.122000e-01   p_cons 3.110000e-01   p_joint 3.803000e-01

Outputting figure to mutsig2_images.part000000000048/DDX3X.3_2057_10000_0.3122_0.311_0.3803.png
                gene_name: DDX3X
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 68 percent done.
DDX42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
Cons ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
KS ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
DDX42   10000 perm   2 sec   (5075 perm/sec)   p_kst 2.835000e-01   p_cons 1.008000e-01   p_joint 3.171000e-01

Joint ci ratio: 5.247475e-02	ci left: 2.123931e-01	ci right 2.238889e-01	k: 4362	n:20000
Cons ci ratio: 8.301585e-02	ci left: 9.612099e-02	ci right 1.044956e-01	k: 2005	n:20000
KS ci ratio: 4.447043e-02	ci left: 2.735364e-01	ci right 2.860277e-01	k: 5595	n:20000
DDX42   20000 perm   4 sec   (4459 perm/sec)   p_kst 2.797500e-01   p_cons 1.002500e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000048/DDX42.3_2885_20000_0.27975_0.10025_0.2181.png
                gene_name: DDX42
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 70 percent done.
DDX52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.058183e-02	ci left: 6.120101e-01	ci right 6.311190e-01	k: 6216	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
DDX52   10000 perm   2 sec   (5608 perm/sec)   p_kst 4.710000e-01   p_cons 2.957000e-01   p_joint 6.216000e-01

Outputting figure to mutsig2_images.part000000000048/DDX52.3_1860_10000_0.471_0.2957_0.6216.png
                gene_name: DDX52
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 72 percent done.
DDX53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
Cons ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
KS ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
DDX53   10000 perm   2 sec   (5365 perm/sec)   p_kst 5.529000e-01   p_cons 3.195000e-01   p_joint 5.694000e-01

Outputting figure to mutsig2_images.part000000000048/DDX53.3_1900_10000_0.5529_0.3195_0.5694.png
                gene_name: DDX53
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 74 percent done.
DDX58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
Cons ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
KS ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
DDX58   10000 perm   2 sec   (5243 perm/sec)   p_kst 4.828000e-01   p_cons 3.377000e-01   p_joint 5.527000e-01

Outputting figure to mutsig2_images.part000000000048/DDX58.3_2850_10000_0.4828_0.3377_0.5527.png
                gene_name: DDX58
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 75 percent done.
DDX59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
DDX59   10000 perm   2 sec   (5768 perm/sec)   p_kst 5.130000e-02   p_cons 8.534000e-01   p_joint 5.130000e-02

Joint ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
Cons ci ratio: 1.169731e-02	ci left: 8.438101e-01	ci right 8.537883e-01	k: 16977	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
DDX59   20000 perm   4 sec   (5011 perm/sec)   p_kst 5.360000e-02   p_cons 8.488500e-01   p_joint 5.360000e-02

Joint ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
Cons ci ratio: 9.562403e-03	ci left: 8.444262e-01	ci right 8.525729e-01	k: 25456	n:30000
KS ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
DDX59   30000 perm   6 sec   (4662 perm/sec)   p_kst 5.416667e-02   p_cons 8.485333e-01   p_joint 5.416667e-02

Outputting figure to mutsig2_images.part000000000048/DDX59.3_1888_30000_0.054167_0.84853_0.054167.png
                gene_name: DDX59
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 77 percent done.
DEFA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
KS ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
DEFA4   10000 perm   2 sec   (6330 perm/sec)   p_kst 2.479000e-01   p_cons 4.981000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000048/DEFA4.3_302_10000_0.2479_0.4981_0.3838.png
                gene_name: DEFA4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 79 percent done.
DCPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
DCPS   10000 perm   2 sec   (6437 perm/sec)   p_kst 8.949000e-01   p_cons 1.040000e-01   p_joint 6.098000e-01

Joint ci ratio: 3.968865e-02	ci left: 3.212948e-01	ci right 3.343553e-01	k: 6556	n:20000
Cons ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
KS ci ratio: 9.444814e-03	ci left: 8.916867e-01	ci right 9.001978e-01	k: 17920	n:20000
DCPS   20000 perm   4 sec   (5389 perm/sec)   p_kst 8.960000e-01   p_cons 1.032500e-01   p_joint 3.278000e-01

Outputting figure to mutsig2_images.part000000000048/DCPS.2_1038_20000_0.896_0.10325_0.3278.png
                gene_name: DCPS
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 81 percent done.
DCST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
DCST2   10000 perm   2 sec   (5477 perm/sec)   p_kst 3.404000e-01   p_cons 4.564000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000048/DCST2.2_2382_10000_0.3404_0.4564_0.5342.png
                gene_name: DCST2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 83 percent done.
DCTN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
Cons ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
KS ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
DCTN5   10000 perm   1 sec   (6730 perm/sec)   p_kst 2.608000e-01   p_cons 6.100000e-01   p_joint 3.998000e-01

Outputting figure to mutsig2_images.part000000000048/DCTN5.2_573_10000_0.2608_0.61_0.3998.png
                gene_name: DCTN5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 85 percent done.
DDAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
DDAH2   10000 perm   2 sec   (6439 perm/sec)   p_kst 5.480000e-01   p_cons 1.522000e-01   p_joint 1.979000e-01

Outputting figure to mutsig2_images.part000000000048/DDAH2.2_882_10000_0.548_0.1522_0.1979.png
                gene_name: DDAH2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 87 percent done.
DDIT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
KS ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
DDIT4   10000 perm   2 sec   (6557 perm/sec)   p_kst 8.105000e-01   p_cons 7.871000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDIT4.2_707_10000_0.8105_0.7871_1.png
                gene_name: DDIT4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
DDX24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
KS ci ratio: 3.169932e-03	ci left: 9.918346e-01	ci right 9.950678e-01	k: 9936	n:10000
DDX24   10000 perm   2 sec   (5505 perm/sec)   p_kst 9.936000e-01   p_cons 8.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX24.2_2612_10000_0.9936_0.8623_1.png
                gene_name: DDX24
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
DDX25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
DDX25   10000 perm   2 sec   (6150 perm/sec)   p_kst 4.070000e-02   p_cons 2.972000e-01   p_joint 9.860000e-02

Joint ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
Cons ci ratio: 4.296379e-02	ci left: 2.875422e-01	ci right 3.002178e-01	k: 5877	n:20000
KS ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
DDX25   20000 perm   4 sec   (5268 perm/sec)   p_kst 4.025000e-02   p_cons 2.938500e-01   p_joint 8.105000e-02

Joint ci ratio: 7.633414e-02	ci left: 7.770740e-02	ci right 8.390740e-02	k: 2423	n:30000
Cons ci ratio: 3.507420e-02	ci left: 2.887817e-01	ci right 2.991249e-01	k: 8818	n:30000
KS ci ratio: 1.102520e-01	ci left: 3.819990e-02	ci right 4.268966e-02	k: 1212	n:30000
DDX25   30000 perm   6 sec   (4948 perm/sec)   p_kst 4.040000e-02   p_cons 2.939333e-01   p_joint 8.076667e-02

Joint ci ratio: 5.702574e-02	ci left: 1.026292e-01	ci right 1.086782e-01	k: 4225	n:40000
Cons ci ratio: 3.037456e-02	ci left: 2.894881e-01	ci right 2.984418e-01	k: 11758	n:40000
KS ci ratio: 9.497260e-02	ci left: 3.890666e-02	ci right 4.281035e-02	k: 1633	n:40000
DDX25   40000 perm   8 sec   (4777 perm/sec)   p_kst 4.082500e-02   p_cons 2.939500e-01   p_joint 1.056250e-01

Outputting figure to mutsig2_images.part000000000048/DDX25.2_1500_40000_0.040825_0.29395_0.10562.png
                gene_name: DDX25
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 92 percent done.
DDX49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
DDX49   10000 perm   2 sec   (6145 perm/sec)   p_kst 3.009000e-01   p_cons 7.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX49.2_1504_10000_0.3009_0.7748_1.png
                gene_name: DDX49
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
DDX54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
Cons ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
KS ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
DDX54   10000 perm   2 sec   (5387 perm/sec)   p_kst 1.267000e-01   p_cons 7.852000e-01   p_joint 1.915000e-01

Joint ci ratio: 5.861568e-02	ci left: 1.773660e-01	ci right 1.881264e-01	k: 3654	n:20000
Cons ci ratio: 1.496738e-02	ci left: 7.683912e-01	ci right 7.800289e-01	k: 15485	n:20000
KS ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
DDX54   20000 perm   4 sec   (4569 perm/sec)   p_kst 1.270000e-01   p_cons 7.742500e-01   p_joint 1.827000e-01

Outputting figure to mutsig2_images.part000000000048/DDX54.2_2729_20000_0.127_0.77425_0.1827.png
                gene_name: DDX54
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 96 percent done.
DEAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
Cons ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
KS ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
DEAF1   10000 perm   2 sec   (5530 perm/sec)   p_kst 1.131000e-01   p_cons 5.290000e-01   p_joint 2.731000e-01

Joint ci ratio: 7.758051e-02	ci left: 1.087912e-01	ci right 1.176216e-01	k: 2263	n:20000
Cons ci ratio: 2.578285e-02	ci left: 5.291587e-01	ci right 5.430308e-01	k: 10722	n:20000
KS ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
DEAF1   20000 perm   4 sec   (4986 perm/sec)   p_kst 1.116000e-01   p_cons 5.361000e-01   p_joint 1.131500e-01

Outputting figure to mutsig2_images.part000000000048/DEAF1.2_1746_20000_0.1116_0.5361_0.11315.png
                gene_name: DEAF1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 98 percent done.
DEDD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
Cons ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
DEDD   10000 perm   2 sec   (6378 perm/sec)   p_kst 6.187000e-01   p_cons 4.941000e-01   p_joint 7.639000e-01

Outputting figure to mutsig2_images.part000000000048/DEDD.2_973_10000_0.6187_0.4941_0.7639.png
                gene_name: DEDD
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000048
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 48 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 4421875: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000049> was used as the working directory.
Started at Wed Oct 24 17:38:17 2012
Results reported at Wed Oct 24 18:15:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000049.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000049.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 49  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000049.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2325.67 sec.
    Max Memory :      5476 MB
    Max Swap   :      7763 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
49
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 49
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 49: processing genes 4344 - 4433
Calculating significance of each gene.
Using projection method.
4344	DEFA6	3.210386e-02
4345	DEFB1	1
4346	DEFB104A	1
4347	DEFB104B	1
4348	DEFB106A	1
4349	DEFB106B	1
4350	DEFB108B	3.729353e-01
4351	DEFB110	1.096997e-01
4352	DEFB112	3.838667e-04
4353	DEFB113	5.360278e-02
4354	DEFB114	2.871791e-01
4355	DEFB115	1.111199e-02
4356	DEFB116	3.349696e-03
4357	DEFB118	4.767161e-01
4358	DEFB119	4.959164e-01
4359	DEFB121	8.634755e-02
4360	DEFB123	9.193922e-02
4361	DEFB124	1
4362	DEFB125	8.220008e-03
4363	DEFB126	4.159752e-01
4364	DEFB127	2.389143e-01
4365	DEFB128	1
4366	DEFB129	1
4367	DEFB131	1
4368	DEFB132	1
4369	DEFB134	1
4370	DEFB135	1
4371	DEFB136	3.798455e-02
4372	DEFB4A	1
4373	DEGS1	3.176782e-01
4374	DEGS2	6.878430e-01
4375	DEK	1
4376	DEM1	1
4377	DENND1A	9.083486e-01
4378	DENND1B	1
4379	DENND1C	9.467353e-01
4380	DENND2A	3.132152e-01
4381	DENND2C	1.491412e-01
4382	DENND2D	1
4383	DENND3	9.996439e-01
4384	DENND4A	9.867405e-01
4385	DENND4B	1
4386	DENND4C	7.336386e-01
4387	DENND5A	8.653583e-01
4388	DENND5B	8.687339e-01
4389	DENR	1
4390	DEPDC1	5.243036e-01
4391	DEPDC1B	5.063609e-01
4392	DEPDC4	3.414428e-01
4393	DEPDC5	1
4394	DEPDC6	4.174920e-01
4395	DEPDC7	5.110011e-01
4396	DERA	6.977538e-01
4397	DERL1	2.973648e-01
4398	DERL2	1
4399	DERL3	1
4400	DES	1
4401	DET1	4.902799e-01
4402	DEXI	1
4403	DFFA	3.500237e-01
4404	DFFB	5.972895e-01
4405	DFNA5	8.544859e-01
4406	DFNB31	8.683198e-01
4407	DFNB59	4.702964e-01
4408	DGAT1	5.826373e-01
4409	DGAT2	1
4410	DGAT2L6	6.792135e-01
4411	DGCR14	3.932801e-01
4412	DGCR2	7.303222e-01
4413	DGCR6	1
4414	DGCR6L	7.482094e-01
4415	DGCR8	9.955886e-01
4416	DGKA	5.520241e-01
4417	DGKB	1.106295e-01
4418	DGKD	9.542520e-01
4419	DGKE	2.529941e-01
4420	DGKG	4.784946e-01
4421	DGKH	9.721268e-01
4422	DGKI	3.125265e-01
4423	DGKK	9.954132e-01
4424	DGKQ	1
4425	DGKZ	9.199334e-01
4426	DGUOK	6.783756e-01
4427	DHCR24	8.282532e-01
4428	DHCR7	1
4429	DHDDS	1
4430	DHDH	7.833270e-01
4431	DHDPSL	8.537511e-01
4432	DHFR	1
4433	DHFRL1	2.421738e-01
Done

Running MutSig 2:
Scatter job 49: processing genes 4344 - 4433
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DGKI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
Cons ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
DGKI   10000 perm   2 sec   (4176 perm/sec)   p_kst 4.320000e-02   p_cons 5.850000e-02   p_joint 4.620000e-02

Joint ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
Cons ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
KS ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
DGKI   20000 perm   7 sec   (2732 perm/sec)   p_kst 4.305000e-02   p_cons 5.710000e-02   p_joint 7.120000e-02

Joint ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 1.072466e-01	ci left: 4.034245e-02	ci right 4.494666e-02	k: 1278	n:30000
DGKI   30000 perm   10 sec   (2958 perm/sec)   p_kst 4.260000e-02   p_cons 5.936667e-02   p_joint 6.026667e-02

Joint ci ratio: 7.565176e-02	ci left: 6.051551e-02	ci right 6.529819e-02	k: 2515	n:40000
Cons ci ratio: 7.841581e-02	ci left: 5.648964e-02	ci right 6.112466e-02	k: 2351	n:40000
KS ci ratio: 9.410529e-02	ci left: 3.961521e-02	ci right 4.355170e-02	k: 1662	n:40000
DGKI   40000 perm   13 sec   (3068 perm/sec)   p_kst 4.155000e-02   p_cons 5.877500e-02   p_joint 6.287500e-02

Outputting figure to mutsig2_images.part000000000049/DGKI.23_3334_40000_0.04155_0.058775_0.062875.png
                gene_name: DGKI
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 2 percent done.
DGKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
Cons ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
DGKB   10000 perm   2 sec   (4220 perm/sec)   p_kst 1.191000e-01   p_cons 3.211000e-01   p_joint 1.523000e-01

Joint ci ratio: 5.702725e-02	ci left: 1.856218e-01	ci right 1.965681e-01	k: 3821	n:20000
Cons ci ratio: 4.016622e-02	ci left: 3.160727e-01	ci right 3.290789e-01	k: 6451	n:20000
KS ci ratio: 7.469007e-02	ci left: 1.165105e-01	ci right 1.256000e-01	k: 2420	n:20000
DGKB   20000 perm   5 sec   (3825 perm/sec)   p_kst 1.210000e-01   p_cons 3.225500e-01   p_joint 1.910500e-01

Outputting figure to mutsig2_images.part000000000049/DGKB.15_2530_20000_0.121_0.32255_0.19105.png
                gene_name: DGKB
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 4 percent done.
DENND2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
DENND2A   10000 perm   2 sec   (4663 perm/sec)   p_kst 1.800000e-03   p_cons 6.469000e-01   p_joint 9.700000e-03

Joint ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
Cons ci ratio: 2.019620e-02	ci left: 6.465569e-01	ci right 6.597986e-01	k: 13064	n:20000
KS ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
DENND2A   20000 perm   5 sec   (4256 perm/sec)   p_kst 1.550000e-03   p_cons 6.532000e-01   p_joint 6.200000e-03

Joint ci ratio: 3.837144e-01	ci left: 2.803236e-03	ci right 4.162393e-03	k: 103	n:30000
Cons ci ratio: 1.651098e-02	ci left: 6.472142e-01	ci right 6.580229e-01	k: 19579	n:30000
KS ci ratio: 6.117725e-01	ci left: 9.527184e-04	ci right 1.815184e-03	k: 40	n:30000
DENND2A   30000 perm   7 sec   (4070 perm/sec)   p_kst 1.333333e-03   p_cons 6.526333e-01   p_joint 3.433333e-03

Joint ci ratio: 2.285590e-01	ci left: 6.465611e-03	ci right 8.157099e-03	k: 291	n:40000
Cons ci ratio: 1.433321e-02	ci left: 6.468572e-01	ci right 6.562208e-01	k: 26062	n:40000
KS ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
DENND2A   40000 perm   10 sec   (3951 perm/sec)   p_kst 1.350000e-03   p_cons 6.515500e-01   p_joint 7.275000e-03

Joint ci ratio: 2.109308e-01	ci left: 6.136311e-03	ci right 7.601822e-03	k: 342	n:50000
Cons ci ratio: 1.282599e-02	ci left: 6.471443e-01	ci right 6.555181e-01	k: 32567	n:50000
KS ci ratio: 4.681969e-01	ci left: 1.073876e-03	ci right 1.746158e-03	k: 69	n:50000
DENND2A   50000 perm   13 sec   (3868 perm/sec)   p_kst 1.380000e-03   p_cons 6.513400e-01   p_joint 6.840000e-03

Joint ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
Cons ci ratio: 1.169751e-02	ci left: 6.479391e-01	ci right 6.555796e-01	k: 39106	n:60000
KS ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
DENND2A   60000 perm   16 sec   (3792 perm/sec)   p_kst 1.283333e-03   p_cons 6.517667e-01   p_joint 6.366667e-03

Joint ci ratio: 2.159366e-01	ci left: 4.179774e-03	ci right 5.204805e-03	k: 327	n:70000
Cons ci ratio: 1.087985e-02	ci left: 6.461240e-01	ci right 6.532064e-01	k: 45477	n:70000
KS ci ratio: 4.200039e-01	ci left: 9.828124e-04	ci right 1.517057e-03	k: 86	n:70000
DENND2A   70000 perm   19 sec   (3723 perm/sec)   p_kst 1.228571e-03   p_cons 6.496714e-01   p_joint 4.671429e-03

Joint ci ratio: 1.483692e-01	ci left: 8.007889e-03	ci right 9.303121e-03	k: 691	n:80000
Cons ci ratio: 1.020254e-02	ci left: 6.452176e-01	ci right 6.518467e-01	k: 51883	n:80000
KS ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
DENND2A   80000 perm   22 sec   (3645 perm/sec)   p_kst 1.225000e-03   p_cons 6.485375e-01   p_joint 8.637500e-03

Joint ci ratio: 1.432152e-01	ci left: 7.664023e-03	ci right 8.856887e-03	k: 742	n:90000
Cons ci ratio: 9.613757e-03	ci left: 6.456600e-01	ci right 6.519082e-01	k: 58391	n:90000
KS ci ratio: 3.805177e-01	ci left: 9.543138e-04	ci right 1.412148e-03	k: 105	n:90000
DENND2A   90000 perm   25 sec   (3591 perm/sec)   p_kst 1.166667e-03   p_cons 6.487889e-01   p_joint 8.244444e-03

Joint ci ratio: 1.259081e-01	ci left: 8.995218e-03	ci right 1.021348e-02	k: 959	n:100000
Cons ci ratio: 9.108193e-03	ci left: 6.464333e-01	ci right 6.523580e-01	k: 64940	n:100000
KS ci ratio: 3.606505e-01	ci left: 9.677150e-04	ci right 1.402051e-03	k: 117	n:100000
DENND2A   100000 perm   28 sec   (3539 perm/sec)   p_kst 1.170000e-03   p_cons 6.494000e-01   p_joint 9.590000e-03

Joint ci ratio: 1.221690e-01	ci left: 8.705922e-03	ci right 9.847449e-03	k: 1019	n:110000
Cons ci ratio: 8.693518e-03	ci left: 6.460891e-01	ci right 6.517394e-01	k: 71381	n:110000
KS ci ratio: 3.449328e-01	ci left: 9.708832e-04	ci right 1.383415e-03	k: 128	n:110000
DENND2A   110000 perm   31 sec   (3493 perm/sec)   p_kst 1.163636e-03   p_cons 6.489182e-01   p_joint 9.263636e-03

Joint ci ratio: 1.181377e-01	ci left: 8.554273e-03	ci right 9.636317e-03	k: 1090	n:120000
Cons ci ratio: 8.320399e-03	ci left: 6.463753e-01	ci right 6.517842e-01	k: 77890	n:120000
KS ci ratio: 3.334992e-01	ci left: 9.585883e-04	ci right 1.349496e-03	k: 137	n:120000
DENND2A   120000 perm   35 sec   (3447 perm/sec)   p_kst 1.141667e-03   p_cons 6.490833e-01   p_joint 9.083333e-03

Joint ci ratio: 1.153857e-01	ci left: 8.291972e-03	ci right 9.314735e-03	k: 1143	n:130000
Cons ci ratio: 7.996392e-03	ci left: 6.463444e-01	ci right 6.515412e-01	k: 84363	n:130000
KS ci ratio: 3.188185e-01	ci left: 9.766687e-04	ci right 1.353843e-03	k: 150	n:130000
DENND2A   130000 perm   38 sec   (3399 perm/sec)   p_kst 1.153846e-03   p_cons 6.489462e-01   p_joint 8.792308e-03

Joint ci ratio: 1.211013e-01	ci left: 6.978499e-03	ci right 7.884938e-03	k: 1039	n:140000
Cons ci ratio: 7.704368e-03	ci left: 6.465076e-01	ci right 6.515148e-01	k: 90862	n:140000
KS ci ratio: 3.136752e-01	ci left: 9.397836e-04	ci right 1.295684e-03	k: 155	n:140000
DENND2A   140000 perm   42 sec   (3356 perm/sec)   p_kst 1.107143e-03   p_cons 6.490143e-01   p_joint 7.421429e-03

Joint ci ratio: 1.246178e-01	ci left: 6.144776e-03	ci right 6.967805e-03	k: 982	n:150000
Cons ci ratio: 7.434216e-03	ci left: 6.471393e-01	ci right 6.519749e-01	k: 97434	n:150000
KS ci ratio: 3.031688e-01	ci left: 9.447914e-04	ci right 1.288295e-03	k: 166	n:150000
DENND2A   150000 perm   45 sec   (3312 perm/sec)   p_kst 1.106667e-03   p_cons 6.495600e-01   p_joint 6.546667e-03

Joint ci ratio: 1.252863e-01	ci left: 5.700099e-03	ci right 6.467964e-03	k: 972	n:160000
Cons ci ratio: 7.205624e-03	ci left: 6.467432e-01	ci right 6.514264e-01	k: 103854	n:160000
KS ci ratio: 2.904035e-01	ci left: 9.725175e-04	ci right 1.308480e-03	k: 181	n:160000
DENND2A   160000 perm   49 sec   (3269 perm/sec)   p_kst 1.131250e-03   p_cons 6.490875e-01   p_joint 6.075000e-03

Joint ci ratio: 1.255688e-01	ci left: 5.341945e-03	ci right 6.063304e-03	k: 968	n:170000
Cons ci ratio: 6.990473e-03	ci left: 6.468141e-01	ci right 6.513573e-01	k: 110345	n:170000
KS ci ratio: 2.784192e-01	ci left: 1.002720e-03	ci right 1.332318e-03	k: 197	n:170000
DENND2A   170000 perm   53 sec   (3230 perm/sec)   p_kst 1.158824e-03   p_cons 6.490882e-01   p_joint 5.694118e-03

Joint ci ratio: 1.288372e-01	ci left: 4.786899e-03	ci right 5.451415e-03	k: 920	n:180000
Cons ci ratio: 6.793842e-03	ci left: 6.468567e-01	ci right 6.512718e-01	k: 116832	n:180000
KS ci ratio: 2.716453e-01	ci left: 9.987383e-04	ci right 1.317678e-03	k: 207	n:180000
DENND2A   180000 perm   56 sec   (3189 perm/sec)   p_kst 1.150000e-03   p_cons 6.490667e-01   p_joint 5.111111e-03

Joint ci ratio: 1.247682e-01	ci left: 4.845836e-03	ci right 5.495718e-03	k: 981	n:190000
Cons ci ratio: 6.616284e-03	ci left: 6.466646e-01	ci right 6.509625e-01	k: 123275	n:190000
KS ci ratio: 2.659542e-01	ci left: 9.903492e-04	ci right 1.298880e-03	k: 216	n:190000
DENND2A   190000 perm   60 sec   (3145 perm/sec)   p_kst 1.136842e-03   p_cons 6.488158e-01   p_joint 5.163158e-03

Joint ci ratio: 1.224866e-01	ci left: 4.782814e-03	ci right 5.411662e-03	k: 1018	n:200000
Cons ci ratio: 6.443887e-03	ci left: 6.470638e-01	ci right 6.512519e-01	k: 129832	n:200000
KS ci ratio: 2.588919e-01	ci left: 9.968860e-04	ci right 1.297873e-03	k: 228	n:200000
DENND2A   200000 perm   64 sec   (3106 perm/sec)   p_kst 1.140000e-03   p_cons 6.491600e-01   p_joint 5.090000e-03

Joint ci ratio: 1.200973e-01	ci left: 4.744369e-03	ci right 5.355130e-03	k: 1059	n:210000
Cons ci ratio: 6.284555e-03	ci left: 6.474072e-01	ci right 6.514934e-01	k: 136385	n:210000
KS ci ratio: 2.528897e-01	ci left: 9.984373e-04	ci right 1.291803e-03	k: 239	n:210000
DENND2A   210000 perm   68 sec   (3069 perm/sec)   p_kst 1.138095e-03   p_cons 6.494524e-01   p_joint 5.042857e-03

Joint ci ratio: 1.376513e-01	ci left: 3.419850e-03	ci right 3.929729e-03	k: 807	n:220000
Cons ci ratio: 6.143223e-03	ci left: 6.472198e-01	ci right 6.512126e-01	k: 142828	n:220000
KS ci ratio: 2.420336e-01	ci left: 1.046859e-03	ci right 1.339266e-03	k: 261	n:220000
DENND2A   220000 perm   73 sec   (3034 perm/sec)   p_kst 1.186364e-03   p_cons 6.492182e-01   p_joint 3.668182e-03

Joint ci ratio: 1.368993e-01	ci left: 3.308934e-03	ci right 3.799360e-03	k: 816	n:230000
Cons ci ratio: 6.002812e-03	ci left: 6.476723e-01	ci right 6.515761e-01	k: 149414	n:230000
KS ci ratio: 2.353876e-01	ci left: 1.062662e-03	ci right 1.350146e-03	k: 276	n:230000
DENND2A   230000 perm   77 sec   (3000 perm/sec)   p_kst 1.200000e-03   p_cons 6.496261e-01   p_joint 3.547826e-03

Joint ci ratio: 1.341371e-01	ci left: 3.307925e-03	ci right 3.787521e-03	k: 850	n:240000
Cons ci ratio: 5.878858e-03	ci left: 6.475247e-01	ci right 6.513467e-01	k: 155865	n:240000
KS ci ratio: 2.304489e-01	ci left: 1.065467e-03	ci right 1.346802e-03	k: 288	n:240000
DENND2A   240000 perm   81 sec   (2960 perm/sec)   p_kst 1.200000e-03   p_cons 6.494375e-01   p_joint 3.541667e-03

Joint ci ratio: 1.324398e-01	ci left: 3.260668e-03	ci right 3.726959e-03	k: 872	n:250000
Cons ci ratio: 5.756509e-03	ci left: 6.478462e-01	ci right 6.515903e-01	k: 162430	n:250000
KS ci ratio: 2.239539e-01	ci left: 1.086980e-03	ci right 1.364791e-03	k: 305	n:250000
DENND2A   250000 perm   85 sec   (2929 perm/sec)   p_kst 1.220000e-03   p_cons 6.497200e-01   p_joint 3.488000e-03

Joint ci ratio: 1.360945e-01	ci left: 2.964246e-03	ci right 3.400791e-03	k: 826	n:260000
Cons ci ratio: 5.644922e-03	ci left: 6.478665e-01	ci right 6.515378e-01	k: 168923	n:260000
KS ci ratio: 2.186575e-01	ci left: 1.099669e-03	ci right 1.373183e-03	k: 320	n:260000
DENND2A   260000 perm   90 sec   (2899 perm/sec)   p_kst 1.230769e-03   p_cons 6.497038e-01   p_joint 3.176923e-03

Joint ci ratio: 1.363509e-01	ci left: 2.843714e-03	ci right 3.263361e-03	k: 823	n:270000
Cons ci ratio: 5.540214e-03	ci left: 6.478340e-01	ci right 6.514368e-01	k: 175402	n:270000
KS ci ratio: 2.163139e-01	ci left: 1.083453e-03	ci right 1.349662e-03	k: 327	n:270000
DENND2A   270000 perm   94 sec   (2868 perm/sec)   p_kst 1.211111e-03   p_cons 6.496370e-01   p_joint 3.048148e-03

Joint ci ratio: 1.358631e-01	ci left: 2.762844e-03	ci right 3.168980e-03	k: 829	n:280000
Cons ci ratio: 5.443216e-03	ci left: 6.476293e-01	ci right 6.511676e-01	k: 181832	n:280000
KS ci ratio: 2.115300e-01	ci left: 1.095461e-03	ci right 1.357896e-03	k: 342	n:280000
DENND2A   280000 perm   99 sec   (2839 perm/sec)   p_kst 1.221429e-03   p_cons 6.494000e-01   p_joint 2.960714e-03

Joint ci ratio: 1.214529e-01	ci left: 3.361861e-03	ci right 3.799876e-03	k: 1037	n:290000
Cons ci ratio: 5.352190e-03	ci left: 6.473494e-01	ci right 6.508269e-01	k: 188236	n:290000
KS ci ratio: 2.067612e-01	ci left: 1.109970e-03	ci right 1.369128e-03	k: 358	n:290000
DENND2A   290000 perm   103 sec   (2809 perm/sec)   p_kst 1.234483e-03   p_cons 6.490897e-01   p_joint 3.575862e-03

Joint ci ratio: 1.195677e-01	ci left: 3.356482e-03	ci right 3.786529e-03	k: 1070	n:300000
Cons ci ratio: 5.261612e-03	ci left: 6.474325e-01	ci right 6.508513e-01	k: 194743	n:300000
KS ci ratio: 2.033900e-01	ci left: 1.110917e-03	ci right 1.365542e-03	k: 370	n:300000
DENND2A   300000 perm   108 sec   (2780 perm/sec)   p_kst 1.233333e-03   p_cons 6.491433e-01   p_joint 3.566667e-03

Joint ci ratio: 1.175542e-01	ci left: 3.364025e-03	ci right 3.787275e-03	k: 1107	n:310000
Cons ci ratio: 5.175151e-03	ci left: 6.475397e-01	ci right 6.509027e-01	k: 201259	n:310000
KS ci ratio: 1.993982e-01	ci left: 1.121029e-03	ci right 1.372315e-03	k: 385	n:310000
DENND2A   310000 perm   113 sec   (2753 perm/sec)   p_kst 1.241935e-03   p_cons 6.492226e-01   p_joint 3.570968e-03

Joint ci ratio: 1.183132e-01	ci left: 3.216425e-03	ci right 3.623900e-03	k: 1093	n:320000
Cons ci ratio: 5.091664e-03	ci left: 6.477439e-01	ci right 6.510534e-01	k: 207808	n:320000
KS ci ratio: 1.968652e-01	ci left: 1.115696e-03	ci right 1.362229e-03	k: 395	n:320000
DENND2A   320000 perm   117 sec   (2725 perm/sec)   p_kst 1.234375e-03   p_cons 6.494000e-01   p_joint 3.415625e-03

Joint ci ratio: 1.175669e-01	ci left: 3.160125e-03	ci right 3.557766e-03	k: 1107	n:330000
Cons ci ratio: 5.016427e-03	ci left: 6.475417e-01	ci right 6.508012e-01	k: 214227	n:330000
KS ci ratio: 1.949076e-01	ci left: 1.104940e-03	ci right 1.346380e-03	k: 403	n:330000
DENND2A   330000 perm   122 sec   (2696 perm/sec)   p_kst 1.221212e-03   p_cons 6.491727e-01   p_joint 3.354545e-03

Joint ci ratio: 1.160076e-01	ci left: 3.152837e-03	ci right 3.543939e-03	k: 1137	n:340000
Cons ci ratio: 4.941938e-03	ci left: 6.475814e-01	ci right 6.507925e-01	k: 220724	n:340000
KS ci ratio: 1.916153e-01	ci left: 1.111626e-03	ci right 1.349946e-03	k: 417	n:340000
DENND2A   340000 perm   127 sec   (2670 perm/sec)   p_kst 1.226471e-03   p_cons 6.491882e-01   p_joint 3.344118e-03

Joint ci ratio: 1.145578e-01	ci left: 3.143223e-03	ci right 3.527930e-03	k: 1166	n:350000
Cons ci ratio: 4.871007e-03	ci left: 6.475877e-01	ci right 6.507527e-01	k: 227210	n:350000
KS ci ratio: 1.889228e-01	ci left: 1.112518e-03	ci right 1.347293e-03	k: 429	n:350000
DENND2A   350000 perm   132 sec   (2642 perm/sec)   p_kst 1.225714e-03   p_cons 6.491714e-01   p_joint 3.331429e-03

Joint ci ratio: 1.152087e-01	ci left: 3.020827e-03	ci right 3.392797e-03	k: 1153	n:360000
Cons ci ratio: 4.802753e-03	ci left: 6.476218e-01	ci right 6.507424e-01	k: 233706	n:360000
KS ci ratio: 1.871906e-01	ci left: 1.102791e-03	ci right 1.333137e-03	k: 437	n:360000
DENND2A   360000 perm   138 sec   (2616 perm/sec)   p_kst 1.213889e-03   p_cons 6.491833e-01   p_joint 3.202778e-03

Joint ci ratio: 1.152638e-01	ci left: 2.936550e-03	ci right 3.298328e-03	k: 1152	n:370000
Cons ci ratio: 4.739398e-03	ci left: 6.474515e-01	ci right 6.505300e-01	k: 240127	n:370000
KS ci ratio: 1.848837e-01	ci left: 1.101330e-03	ci right 1.328219e-03	k: 448	n:370000
DENND2A   370000 perm   143 sec   (2590 perm/sec)   p_kst 1.210811e-03   p_cons 6.489919e-01   p_joint 3.113514e-03

Joint ci ratio: 1.024289e-01	ci left: 3.642752e-03	ci right 4.038557e-03	k: 1458	n:380000
Cons ci ratio: 4.676809e-03	ci left: 6.474537e-01	ci right 6.504914e-01	k: 246610	n:380000
KS ci ratio: 1.814789e-01	ci left: 1.115034e-03	ci right 1.340051e-03	k: 465	n:380000
DENND2A   380000 perm   148 sec   (2564 perm/sec)   p_kst 1.223684e-03   p_cons 6.489737e-01   p_joint 3.836842e-03

Joint ci ratio: 1.042052e-01	ci left: 3.426933e-03	ci right 3.806142e-03	k: 1409	n:390000
Cons ci ratio: 4.615726e-03	ci left: 6.475459e-01	ci right 6.505442e-01	k: 253128	n:390000
KS ci ratio: 1.803232e-01	ci left: 1.101131e-03	ci right 1.321772e-03	k: 471	n:390000
DENND2A   390000 perm   154 sec   (2539 perm/sec)   p_kst 1.207692e-03   p_cons 6.490462e-01   p_joint 3.612821e-03

Joint ci ratio: 1.055326e-01	ci left: 3.256040e-03	ci right 3.621212e-03	k: 1374	n:400000
Cons ci ratio: 4.557976e-03	ci left: 6.475336e-01	ci right 6.504942e-01	k: 259606	n:400000
KS ci ratio: 1.775238e-01	ci left: 1.109424e-03	ci right 1.327905e-03	k: 486	n:400000
DENND2A   400000 perm   159 sec   (2514 perm/sec)   p_kst 1.215000e-03   p_cons 6.490150e-01   p_joint 3.435000e-03

Joint ci ratio: 1.109278e-01	ci left: 2.868097e-03	ci right 3.207279e-03	k: 1244	n:410000
Cons ci ratio: 4.501739e-03	ci left: 6.475832e-01	ci right 6.505074e-01	k: 266109	n:410000
KS ci ratio: 1.739854e-01	ci left: 1.129000e-03	ci right 1.346440e-03	k: 506	n:410000
DENND2A   410000 perm   165 sec   (2490 perm/sec)   p_kst 1.234146e-03   p_cons 6.490463e-01   p_joint 3.034146e-03

Joint ci ratio: 1.097446e-01	ci left: 2.862320e-03	ci right 3.196975e-03	k: 1271	n:420000
Cons ci ratio: 4.446649e-03	ci left: 6.477212e-01	ci right 6.506101e-01	k: 272650	n:420000
KS ci ratio: 1.724621e-01	ci left: 1.122619e-03	ci right 1.336739e-03	k: 515	n:420000
DENND2A   420000 perm   170 sec   (2466 perm/sec)   p_kst 1.226190e-03   p_cons 6.491667e-01   p_joint 3.026190e-03

Joint ci ratio: 1.086405e-01	ci left: 2.854567e-03	ci right 3.184744e-03	k: 1297	n:430000
Cons ci ratio: 4.395777e-03	ci left: 6.476202e-01	ci right 6.504755e-01	k: 279091	n:430000
KS ci ratio: 1.706530e-01	ci left: 1.120994e-03	ci right 1.332331e-03	k: 526	n:430000
DENND2A   430000 perm   176 sec   (2443 perm/sec)   p_kst 1.223256e-03   p_cons 6.490488e-01   p_joint 3.016279e-03

Joint ci ratio: 1.088547e-01	ci left: 2.778630e-03	ci right 3.100698e-03	k: 1292	n:440000
Cons ci ratio: 4.346546e-03	ci left: 6.475308e-01	ci right 6.503536e-01	k: 285535	n:440000
KS ci ratio: 1.693731e-01	ci left: 1.112925e-03	ci right 1.321006e-03	k: 534	n:440000
DENND2A   440000 perm   182 sec   (2421 perm/sec)   p_kst 1.213636e-03   p_cons 6.489432e-01   p_joint 2.936364e-03

Joint ci ratio: 1.079001e-01	ci left: 2.766608e-03	ci right 3.084290e-03	k: 1315	n:450000
Cons ci ratio: 4.298681e-03	ci left: 6.474722e-01	ci right 6.502637e-01	k: 291991	n:450000
KS ci ratio: 1.678125e-01	ci left: 1.109477e-03	ci right 1.314809e-03	k: 544	n:450000
DENND2A   450000 perm   188 sec   (2399 perm/sec)   p_kst 1.208889e-03   p_cons 6.488689e-01   p_joint 2.922222e-03

Joint ci ratio: 1.068900e-01	ci left: 2.759352e-03	ci right 3.073048e-03	k: 1340	n:460000
Cons ci ratio: 4.251348e-03	ci left: 6.475252e-01	ci right 6.502860e-01	k: 298497	n:460000
KS ci ratio: 1.664443e-01	ci left: 1.104105e-03	ci right 1.306610e-03	k: 553	n:460000
DENND2A   460000 perm   194 sec   (2377 perm/sec)   p_kst 1.202174e-03   p_cons 6.489065e-01   p_joint 2.913043e-03

Joint ci ratio: 1.058690e-01	ci left: 2.754489e-03	ci right 3.064455e-03	k: 1366	n:470000
Cons ci ratio: 4.206783e-03	ci left: 6.474419e-01	ci right 6.501733e-01	k: 304940	n:470000
KS ci ratio: 1.639470e-01	ci left: 1.115289e-03	ci right 1.316473e-03	k: 570	n:470000
DENND2A   470000 perm   200 sec   (2355 perm/sec)   p_kst 1.212766e-03   p_cons 6.488085e-01   p_joint 2.906383e-03

Joint ci ratio: 1.052563e-01	ci left: 2.729555e-03	ci right 3.034828e-03	k: 1382	n:480000
Cons ci ratio: 4.164427e-03	ci left: 6.472704e-01	ci right 6.499736e-01	k: 311339	n:480000
KS ci ratio: 1.626706e-01	ci left: 1.110037e-03	ci right 1.308562e-03	k: 579	n:480000
DENND2A   480000 perm   206 sec   (2335 perm/sec)   p_kst 1.206250e-03   p_cons 6.486229e-01   p_joint 2.879167e-03

Joint ci ratio: 1.043924e-01	ci left: 2.719557e-03	ci right 3.021062e-03	k: 1405	n:490000
Cons ci ratio: 4.120556e-03	ci left: 6.474125e-01	ci right 6.500877e-01	k: 317888	n:490000
KS ci ratio: 1.611498e-01	ci left: 1.108923e-03	ci right 1.305215e-03	k: 590	n:490000
DENND2A   490000 perm   212 sec   (2315 perm/sec)   p_kst 1.204082e-03   p_cons 6.487510e-01   p_joint 2.867347e-03

Joint ci ratio: 1.034045e-01	ci left: 2.717763e-03	ci right 3.016044e-03	k: 1432	n:500000
Cons ci ratio: 4.078632e-03	ci left: 6.474830e-01	ci right 6.501312e-01	k: 324404	n:500000
KS ci ratio: 1.594060e-01	ci left: 1.111701e-03	ci right 1.306152e-03	k: 603	n:500000
DENND2A   500000 perm   218 sec   (2296 perm/sec)   p_kst 1.206000e-03   p_cons 6.488080e-01   p_joint 2.864000e-03

Joint ci ratio: 1.023737e-01	ci left: 2.719873e-03	ci right 3.015231e-03	k: 1461	n:510000
Cons ci ratio: 4.037632e-03	ci left: 6.475882e-01	ci right 6.502101e-01	k: 330939	n:510000
KS ci ratio: 1.574623e-01	ci left: 1.118149e-03	ci right 1.311118e-03	k: 618	n:510000
DENND2A   510000 perm   224 sec   (2278 perm/sec)   p_kst 1.211765e-03   p_cons 6.489000e-01   p_joint 2.864706e-03

Joint ci ratio: 9.890878e-02	ci left: 2.862545e-03	ci right 3.162266e-03	k: 1565	n:520000
Cons ci ratio: 3.998064e-03	ci left: 6.476644e-01	ci right 6.502609e-01	k: 337461	n:520000
KS ci ratio: 1.563304e-01	ci left: 1.113274e-03	ci right 1.303891e-03	k: 627	n:520000
DENND2A   520000 perm   230 sec   (2260 perm/sec)   p_kst 1.205769e-03   p_cons 6.489635e-01   p_joint 3.009615e-03

Joint ci ratio: 1.033045e-01	ci left: 2.569431e-03	ci right 2.851143e-03	k: 1435	n:530000
Cons ci ratio: 4.165867e-03	ci left: 6.242539e-01	ci right 6.268617e-01	k: 331546	n:530000
KS ci ratio: 1.548579e-01	ci left: 1.114029e-03	ci right 1.302812e-03	k: 639	n:530000
DENND2A   530000 perm   236 sec   (2242 perm/sec)   p_kst 1.205660e-03   p_cons 6.255585e-01   p_joint 2.707547e-03

Joint ci ratio: 1.023819e-01	ci left: 2.568759e-03	ci right 2.847730e-03	k: 1461	n:540000
Cons ci ratio: 4.127972e-03	ci left: 6.241686e-01	ci right 6.267523e-01	k: 337749	n:540000
KS ci ratio: 1.533085e-01	ci left: 1.116545e-03	ci right 1.303687e-03	k: 652	n:540000
DENND2A   540000 perm   243 sec   (2224 perm/sec)   p_kst 1.207407e-03   p_cons 6.254611e-01   p_joint 2.705556e-03

Joint ci ratio: 1.013471e-01	ci left: 2.575210e-03	ci right 2.851888e-03	k: 1491	n:550000
Cons ci ratio: 4.090647e-03	ci left: 6.241375e-01	ci right 6.266976e-01	k: 343980	n:550000
KS ci ratio: 1.516908e-01	ci left: 1.120728e-03	ci right 1.306409e-03	k: 666	n:550000
DENND2A   550000 perm   249 sec   (2206 perm/sec)   p_kst 1.210909e-03   p_cons 6.254182e-01   p_joint 2.710909e-03

Joint ci ratio: 1.004755e-01	ci left: 2.574481e-03	ci right 2.848561e-03	k: 1517	n:560000
Cons ci ratio: 4.054101e-03	ci left: 6.241325e-01	ci right 6.266697e-01	k: 350225	n:560000
KS ci ratio: 1.502337e-01	ci left: 1.123052e-03	ci right 1.307170e-03	k: 679	n:560000
DENND2A   560000 perm   256 sec   (2188 perm/sec)   p_kst 1.212500e-03   p_cons 6.254018e-01   p_joint 2.708929e-03

Joint ci ratio: 1.001806e-01	ci left: 2.544706e-03	ci right 2.814774e-03	k: 1526	n:570000
Cons ci ratio: 4.018472e-03	ci left: 6.241332e-01	ci right 6.266480e-01	k: 356473	n:570000
KS ci ratio: 1.491414e-01	ci left: 1.120236e-03	ci right 1.302438e-03	k: 689	n:570000
DENND2A   570000 perm   263 sec   (2170 perm/sec)   p_kst 1.208772e-03   p_cons 6.253912e-01   p_joint 2.677193e-03

Joint ci ratio: 9.943488e-02	ci left: 2.539497e-03	ci right 2.806889e-03	k: 1549	n:580000
Cons ci ratio: 3.983371e-03	ci left: 6.241805e-01	ci right 6.266735e-01	k: 362748	n:580000
KS ci ratio: 1.482848e-01	ci left: 1.114201e-03	ci right 1.294289e-03	k: 697	n:580000
DENND2A   580000 perm   270 sec   (2151 perm/sec)   p_kst 1.201724e-03   p_cons 6.254276e-01   p_joint 2.670690e-03

Joint ci ratio: 9.851735e-02	ci left: 2.544390e-03	ci right 2.809683e-03	k: 1578	n:590000
Cons ci ratio: 3.949359e-03	ci left: 6.242042e-01	ci right 6.266759e-01	k: 369010	n:590000
KS ci ratio: 1.468194e-01	ci left: 1.118170e-03	ci right 1.296956e-03	k: 711	n:590000
DENND2A   590000 perm   276 sec   (2134 perm/sec)   p_kst 1.205085e-03   p_cons 6.254407e-01   p_joint 2.674576e-03

Joint ci ratio: 9.858217e-02	ci left: 2.498730e-03	ci right 2.759443e-03	k: 1576	n:600000
Cons ci ratio: 3.915507e-03	ci left: 6.243106e-01	ci right 6.267615e-01	k: 375322	n:600000
KS ci ratio: 1.457994e-01	ci left: 1.115590e-03	ci right 1.292616e-03	k: 721	n:600000
DENND2A   600000 perm   283 sec   (2117 perm/sec)   p_kst 1.201667e-03   p_cons 6.255367e-01   p_joint 2.626667e-03

Joint ci ratio: 9.777944e-02	ci left: 2.499343e-03	ci right 2.757875e-03	k: 1602	n:610000
Cons ci ratio: 3.882973e-03	ci left: 6.243578e-01	ci right 6.267885e-01	k: 381600	n:610000
KS ci ratio: 1.442098e-01	ci left: 1.122580e-03	ci right 1.298606e-03	k: 737	n:610000
DENND2A   610000 perm   290 sec   (2101 perm/sec)   p_kst 1.208197e-03   p_cons 6.255738e-01   p_joint 2.626230e-03

Joint ci ratio: 9.729590e-02	ci left: 2.484207e-03	ci right 2.739830e-03	k: 1618	n:620000
Cons ci ratio: 3.851859e-03	ci left: 6.243278e-01	ci right 6.267388e-01	k: 387831	n:620000
KS ci ratio: 1.436278e-01	ci left: 1.113802e-03	ci right 1.287687e-03	k: 743	n:620000
DENND2A   620000 perm   297 sec   (2085 perm/sec)   p_kst 1.198387e-03   p_cons 6.255339e-01   p_joint 2.609677e-03

Joint ci ratio: 9.690862e-02	ci left: 2.464908e-03	ci right 2.717478e-03	k: 1631	n:630000
Cons ci ratio: 3.820796e-03	ci left: 6.243829e-01	ci right 6.267747e-01	k: 394115	n:630000
KS ci ratio: 1.425778e-01	ci left: 1.112958e-03	ci right 1.285332e-03	k: 754	n:630000
DENND2A   630000 perm   304 sec   (2069 perm/sec)   p_kst 1.196825e-03   p_cons 6.255794e-01   p_joint 2.588889e-03

Joint ci ratio: 9.614577e-02	ci left: 2.466038e-03	ci right 2.716623e-03	k: 1657	n:640000
Cons ci ratio: 3.790333e-03	ci left: 6.244536e-01	ci right 6.268265e-01	k: 400410	n:640000
KS ci ratio: 1.414580e-01	ci left: 1.113652e-03	ci right 1.284665e-03	k: 766	n:640000
DENND2A   640000 perm   312 sec   (2054 perm/sec)   p_kst 1.196875e-03   p_cons 6.256406e-01   p_joint 2.589062e-03

Joint ci ratio: 9.548597e-02	ci left: 2.462636e-03	ci right 2.711061e-03	k: 1680	n:650000
Cons ci ratio: 3.761389e-03	ci left: 6.244221e-01	ci right 6.267768e-01	k: 406640	n:650000
KS ci ratio: 1.404546e-01	ci left: 1.112845e-03	ci right 1.282420e-03	k: 777	n:650000
DENND2A   650000 perm   319 sec   (2038 perm/sec)   p_kst 1.195385e-03   p_cons 6.256000e-01   p_joint 2.584615e-03

Joint ci ratio: 9.475598e-02	ci left: 2.463780e-03	ci right 2.710315e-03	k: 1706	n:660000
Cons ci ratio: 3.733389e-03	ci left: 6.243553e-01	ci right 6.266921e-01	k: 412846	n:660000
KS ci ratio: 1.393837e-01	ci left: 1.113529e-03	ci right 1.281808e-03	k: 789	n:660000
DENND2A   660000 perm   326 sec   (2024 perm/sec)   p_kst 1.195455e-03   p_cons 6.255242e-01   p_joint 2.584848e-03

Joint ci ratio: 9.406969e-02	ci left: 2.463440e-03	ci right 2.708057e-03	k: 1731	n:670000
Cons ci ratio: 3.705910e-03	ci left: 6.243025e-01	ci right 6.266218e-01	k: 419060	n:670000
KS ci ratio: 1.382508e-01	ci left: 1.115638e-03	ci right 1.282752e-03	k: 802	n:670000
DENND2A   670000 perm   334 sec   (2009 perm/sec)   p_kst 1.197015e-03   p_cons 6.254627e-01   p_joint 2.583582e-03

Joint ci ratio: 9.310635e-02	ci left: 2.478915e-03	ci right 2.722412e-03	k: 1767	n:680000
Cons ci ratio: 3.678382e-03	ci left: 6.243337e-01	ci right 6.266359e-01	k: 425330	n:680000
KS ci ratio: 1.365598e-01	ci left: 1.127633e-03	ci right 1.294310e-03	k: 822	n:680000
DENND2A   680000 perm   341 sec   (1994 perm/sec)   p_kst 1.208824e-03   p_cons 6.254853e-01   p_joint 2.598529e-03

Joint ci ratio: 9.263652e-02	ci left: 2.468470e-03	ci right 2.709650e-03	k: 1785	n:690000
Cons ci ratio: 3.652589e-03	ci left: 6.242190e-01	ci right 6.265046e-01	k: 431500	n:690000
KS ci ratio: 1.359013e-01	ci left: 1.122489e-03	ci right 1.287541e-03	k: 830	n:690000
DENND2A   690000 perm   349 sec   (1980 perm/sec)   p_kst 1.202899e-03   p_cons 6.253623e-01   p_joint 2.586957e-03

Joint ci ratio: 9.199496e-02	ci left: 2.468095e-03	ci right 2.707479e-03	k: 1810	n:700000
Cons ci ratio: 3.626523e-03	ci left: 6.242120e-01	ci right 6.264812e-01	k: 437743	n:700000
KS ci ratio: 1.350108e-01	ci left: 1.121635e-03	ci right 1.285394e-03	k: 841	n:700000
DENND2A   700000 perm   356 sec   (1966 perm/sec)   p_kst 1.201429e-03   p_cons 6.253471e-01   p_joint 2.585714e-03

Joint ci ratio: 9.159188e-02	ci left: 2.455351e-03	ci right 2.692399e-03	k: 1826	n:710000
Cons ci ratio: 3.601223e-03	ci left: 6.241771e-01	ci right 6.264303e-01	k: 443966	n:710000
KS ci ratio: 1.341375e-01	ci left: 1.120809e-03	ci right 1.283305e-03	k: 852	n:710000
DENND2A   710000 perm   364 sec   (1952 perm/sec)   p_kst 1.200000e-03   p_cons 6.253042e-01   p_joint 2.571831e-03

Joint ci ratio: 9.102092e-02	ci left: 2.452463e-03	ci right 2.687678e-03	k: 1849	n:720000
Cons ci ratio: 3.576117e-03	ci left: 6.241863e-01	ci right 6.264238e-01	k: 450220	n:720000
KS ci ratio: 1.330499e-01	ci left: 1.124037e-03	ci right 1.285575e-03	k: 866	n:720000
DENND2A   720000 perm   372 sec   (1938 perm/sec)   p_kst 1.202778e-03   p_cons 6.253056e-01   p_joint 2.568056e-03

Joint ci ratio: 9.036382e-02	ci left: 2.455016e-03	ci right 2.688686e-03	k: 1876	n:730000
Cons ci ratio: 3.551550e-03	ci left: 6.241925e-01	ci right 6.264147e-01	k: 456472	n:730000
KS ci ratio: 1.314665e-01	ci left: 1.136455e-03	ci right 1.297682e-03	k: 887	n:730000
DENND2A   730000 perm   379 sec   (1924 perm/sec)   p_kst 1.215068e-03   p_cons 6.253041e-01   p_joint 2.569863e-03

Joint ci ratio: 8.979169e-02	ci left: 2.453541e-03	ci right 2.685515e-03	k: 1900	n:740000
Cons ci ratio: 3.527624e-03	ci left: 6.241798e-01	ci right 6.263868e-01	k: 462710	n:740000
KS ci ratio: 1.307326e-01	ci left: 1.134168e-03	ci right 1.294102e-03	k: 897	n:740000
DENND2A   740000 perm   389 sec   (1902 perm/sec)   p_kst 1.212162e-03   p_cons 6.252838e-01   p_joint 2.567568e-03

Joint ci ratio: 8.920707e-02	ci left: 2.453415e-03	ci right 2.683787e-03	k: 1925	n:750000
Cons ci ratio: 3.504305e-03	ci left: 6.241500e-01	ci right 6.263424e-01	k: 468935	n:750000
KS ci ratio: 1.300826e-01	ci left: 1.130654e-03	ci right 1.289239e-03	k: 906	n:750000
DENND2A   750000 perm   397 sec   (1889 perm/sec)   p_kst 1.208000e-03   p_cons 6.252467e-01   p_joint 2.566667e-03

Joint ci ratio: 8.872496e-02	ci left: 2.448150e-03	ci right 2.676721e-03	k: 1946	n:760000
Cons ci ratio: 3.481629e-03	ci left: 6.240961e-01	ci right 6.262740e-01	k: 475141	n:760000
KS ci ratio: 1.295840e-01	ci left: 1.124688e-03	ci right 1.281785e-03	k: 913	n:760000
DENND2A   760000 perm   405 sec   (1876 perm/sec)   p_kst 1.201316e-03   p_cons 6.251855e-01   p_joint 2.560526e-03

Joint ci ratio: 8.843095e-02	ci left: 2.432864e-03	ci right 2.659216e-03	k: 1959	n:770000
Cons ci ratio: 3.458888e-03	ci left: 6.241112e-01	ci right 6.262749e-01	k: 481399	n:770000
KS ci ratio: 1.290209e-01	ci left: 1.120135e-03	ci right 1.275864e-03	k: 921	n:770000
DENND2A   770000 perm   413 sec   (1864 perm/sec)   p_kst 1.196104e-03   p_cons 6.251935e-01   p_joint 2.544156e-03

Joint ci ratio: 8.809509e-02	ci left: 2.420479e-03	ci right 2.644780e-03	k: 1974	n:780000
Cons ci ratio: 3.437330e-03	ci left: 6.240246e-01	ci right 6.261745e-01	k: 487578	n:780000
KS ci ratio: 1.281208e-01	ci left: 1.121905e-03	ci right 1.276709e-03	k: 934	n:780000
DENND2A   780000 perm   422 sec   (1850 perm/sec)   p_kst 1.197436e-03   p_cons 6.251000e-01   p_joint 2.530769e-03

Joint ci ratio: 8.743328e-02	ci left: 2.426981e-03	ci right 2.650109e-03	k: 2004	n:790000
Cons ci ratio: 3.416492e-03	ci left: 6.238959e-01	ci right 6.260323e-01	k: 493722	n:790000
KS ci ratio: 1.272392e-01	ci left: 1.123634e-03	ci right 1.277529e-03	k: 947	n:790000
DENND2A   790000 perm   430 sec   (1837 perm/sec)   p_kst 1.198734e-03   p_cons 6.249646e-01   p_joint 2.536709e-03

Joint ci ratio: 8.739099e-02	ci left: 2.399088e-03	ci right 2.619539e-03	k: 2006	n:800000
Cons ci ratio: 3.394734e-03	ci left: 6.239493e-01	ci right 6.260723e-01	k: 500009	n:800000
KS ci ratio: 1.261785e-01	ci left: 1.128955e-03	ci right 1.282194e-03	k: 963	n:800000
DENND2A   800000 perm   438 sec   (1825 perm/sec)   p_kst 1.203750e-03   p_cons 6.250113e-01   p_joint 2.507500e-03

Joint ci ratio: 8.344204e-02	ci left: 2.603874e-03	ci right 2.831805e-03	k: 2200	n:810000
Cons ci ratio: 3.373839e-03	ci left: 6.239385e-01	ci right 6.260483e-01	k: 506245	n:810000
KS ci ratio: 1.255293e-01	ci left: 1.126974e-03	ci right 1.279098e-03	k: 973	n:810000
DENND2A   810000 perm   447 sec   (1813 perm/sec)   p_kst 1.201235e-03   p_cons 6.249938e-01   p_joint 2.716049e-03

Joint ci ratio: 8.310339e-02	ci left: 2.593613e-03	ci right 2.819679e-03	k: 2218	n:820000
Cons ci ratio: 3.353579e-03	ci left: 6.238925e-01	ci right 6.259895e-01	k: 512452	n:820000
KS ci ratio: 1.250172e-01	ci left: 1.122681e-03	ci right 1.273561e-03	k: 981	n:820000
DENND2A   820000 perm   456 sec   (1800 perm/sec)   p_kst 1.196341e-03   p_cons 6.249415e-01   p_joint 2.704878e-03

Joint ci ratio: 8.262082e-02	ci left: 2.593040e-03	ci right 2.817682e-03	k: 2244	n:830000
Cons ci ratio: 3.334073e-03	ci left: 6.237923e-01	ci right 6.258767e-01	k: 518613	n:830000
KS ci ratio: 1.240730e-01	ci left: 1.126664e-03	ci right 1.276852e-03	k: 996	n:830000
DENND2A   830000 perm   464 sec   (1788 perm/sec)   p_kst 1.200000e-03   p_cons 6.248349e-01   p_joint 2.703614e-03

Joint ci ratio: 8.231026e-02	ci left: 2.581991e-03	ci right 2.804794e-03	k: 2261	n:840000
Cons ci ratio: 3.314213e-03	ci left: 6.237922e-01	ci right 6.258641e-01	k: 524856	n:840000
KS ci ratio: 1.235170e-01	ci left: 1.123633e-03	ci right 1.272698e-03	k: 1005	n:840000
DENND2A   840000 perm   473 sec   (1776 perm/sec)   p_kst 1.196429e-03   p_cons 6.248286e-01   p_joint 2.691667e-03

Joint ci ratio: 8.191312e-02	ci left: 2.576965e-03	ci right 2.798210e-03	k: 2283	n:850000
Cons ci ratio: 3.295373e-03	ci left: 6.236967e-01	ci right 6.257566e-01	k: 531018	n:850000
KS ci ratio: 1.229683e-01	ci left: 1.120676e-03	ci right 1.268639e-03	k: 1014	n:850000
DENND2A   850000 perm   482 sec   (1765 perm/sec)   p_kst 1.192941e-03   p_cons 6.247271e-01   p_joint 2.685882e-03

Joint ci ratio: 8.123957e-02	ci left: 2.590286e-03	ci right 2.810759e-03	k: 2321	n:860000
Cons ci ratio: 3.276119e-03	ci left: 6.237082e-01	ci right 6.257560e-01	k: 537270	n:860000
KS ci ratio: 1.217739e-01	ci left: 1.130189e-03	ci right 1.277855e-03	k: 1034	n:860000
DENND2A   860000 perm   490 sec   (1754 perm/sec)   p_kst 1.202326e-03   p_cons 6.247326e-01   p_joint 2.698837e-03

Joint ci ratio: 8.089227e-02	ci left: 2.583035e-03	ci right 2.801907e-03	k: 2341	n:870000
Cons ci ratio: 3.257359e-03	ci left: 6.236965e-01	ci right 6.257325e-01	k: 543502	n:870000
KS ci ratio: 1.211320e-01	ci left: 1.129458e-03	ci right 1.276194e-03	k: 1045	n:870000
DENND2A   870000 perm   499 sec   (1743 perm/sec)   p_kst 1.201149e-03   p_cons 6.247149e-01   p_joint 2.690805e-03

Joint ci ratio: 8.036198e-02	ci left: 2.588199e-03	ci right 2.806004e-03	k: 2372	n:880000
Cons ci ratio: 3.238329e-03	ci left: 6.237704e-01	ci right 6.257947e-01	k: 549809	n:880000
KS ci ratio: 1.203292e-01	ci left: 1.132052e-03	ci right 1.278081e-03	k: 1059	n:880000
DENND2A   880000 perm   508 sec   (1732 perm/sec)   p_kst 1.203409e-03   p_cons 6.247830e-01   p_joint 2.695455e-03

Joint ci ratio: 8.127838e-02	ci left: 2.500767e-03	ci right 2.713727e-03	k: 2319	n:890000
Cons ci ratio: 3.220060e-03	ci left: 6.237796e-01	ci right 6.257926e-01	k: 556060	n:890000
KS ci ratio: 1.198780e-01	ci left: 1.128051e-03	ci right 1.272980e-03	k: 1067	n:890000
DENND2A   890000 perm   517 sec   (1721 perm/sec)   p_kst 1.198876e-03   p_cons 6.247865e-01   p_joint 2.605618e-03

Joint ci ratio: 8.060314e-02	ci left: 2.515437e-03	ci right 2.727784e-03	k: 2358	n:900000
Cons ci ratio: 3.202112e-03	ci left: 6.237865e-01	ci right 6.257882e-01	k: 562309	n:900000
KS ci ratio: 1.189897e-01	ci left: 1.132764e-03	ci right 1.277144e-03	k: 1083	n:900000
DENND2A   900000 perm   526 sec   (1710 perm/sec)   p_kst 1.203333e-03   p_cons 6.247878e-01   p_joint 2.620000e-03

Joint ci ratio: 8.217327e-02	ci left: 2.391977e-03	ci right 2.598023e-03	k: 2269	n:910000
Cons ci ratio: 3.184887e-03	ci left: 6.237306e-01	ci right 6.257213e-01	k: 568501	n:910000
KS ci ratio: 1.186622e-01	ci left: 1.126713e-03	ci right 1.269899e-03	k: 1089	n:910000
DENND2A   910000 perm   536 sec   (1699 perm/sec)   p_kst 1.196703e-03   p_cons 6.247264e-01   p_joint 2.493407e-03

Joint ci ratio: 8.290990e-02	ci left: 2.323393e-03	ci right 2.525412e-03	k: 2229	n:920000
Cons ci ratio: 3.167826e-03	ci left: 6.236922e-01	ci right 6.256722e-01	k: 574708	n:920000
KS ci ratio: 1.179608e-01	ci left: 1.128178e-03	ci right 1.270644e-03	k: 1102	n:920000
DENND2A   920000 perm   545 sec   (1688 perm/sec)   p_kst 1.197826e-03   p_cons 6.246826e-01   p_joint 2.422826e-03

Joint ci ratio: 8.261443e-02	ci left: 2.315258e-03	ci right 2.515818e-03	k: 2245	n:930000
Cons ci ratio: 3.150733e-03	ci left: 6.236999e-01	ci right 6.256692e-01	k: 580957	n:930000
KS ci ratio: 1.171666e-01	ci left: 1.131702e-03	ci right 1.273584e-03	k: 1117	n:930000
DENND2A   930000 perm   554 sec   (1677 perm/sec)   p_kst 1.201075e-03   p_cons 6.246849e-01   p_joint 2.413978e-03

Joint ci ratio: 8.466146e-02	ci left: 2.179172e-03	ci right 2.372852e-03	k: 2138	n:940000
Cons ci ratio: 3.134333e-03	ci left: 6.236447e-01	ci right 6.256035e-01	k: 587147	n:940000
KS ci ratio: 1.163882e-01	ci left: 1.135154e-03	ci right 1.276459e-03	k: 1132	n:940000
DENND2A   940000 perm   564 sec   (1667 perm/sec)   p_kst 1.204255e-03   p_cons 6.246245e-01   p_joint 2.274468e-03

Joint ci ratio: 8.442545e-02	ci left: 2.168597e-03	ci right 2.360773e-03	k: 2150	n:950000
Cons ci ratio: 3.118222e-03	ci left: 6.235854e-01	ci right 6.255339e-01	k: 593332	n:950000
KS ci ratio: 1.161327e-01	ci left: 1.128315e-03	ci right 1.268439e-03	k: 1137	n:950000
DENND2A   950000 perm   574 sec   (1656 perm/sec)   p_kst 1.196842e-03   p_cons 6.245600e-01   p_joint 2.263158e-03

Joint ci ratio: 8.391965e-02	ci left: 2.172521e-03	ci right 2.363835e-03	k: 2176	n:960000
Cons ci ratio: 3.101833e-03	ci left: 6.236065e-01	ci right 6.255448e-01	k: 599593	n:960000
KS ci ratio: 1.155755e-01	ci left: 1.127688e-03	ci right 1.267016e-03	k: 1148	n:960000
DENND2A   960000 perm   583 sec   (1645 perm/sec)   p_kst 1.195833e-03   p_cons 6.245760e-01   p_joint 2.266667e-03

Joint ci ratio: 8.340385e-02	ci left: 2.177377e-03	ci right 2.367883e-03	k: 2203	n:970000
Cons ci ratio: 3.085706e-03	ci left: 6.236262e-01	ci right 6.255545e-01	k: 605853	n:970000
KS ci ratio: 1.148282e-01	ci left: 1.131081e-03	ci right 1.269863e-03	k: 1163	n:970000
DENND2A   970000 perm   593 sec   (1636 perm/sec)   p_kst 1.198969e-03   p_cons 6.245907e-01   p_joint 2.271134e-03

Joint ci ratio: 8.287883e-02	ci left: 2.183137e-03	ci right 2.372886e-03	k: 2231	n:980000
Cons ci ratio: 3.070269e-03	ci left: 6.235781e-01	ci right 6.254966e-01	k: 612047	n:980000
KS ci ratio: 1.141923e-01	ci left: 1.132425e-03	ci right 1.270550e-03	k: 1176	n:980000
DENND2A   980000 perm   603 sec   (1626 perm/sec)   p_kst 1.200000e-03   p_cons 6.245378e-01   p_joint 2.276531e-03

Joint ci ratio: 8.251010e-02	ci left: 2.180869e-03	ci right 2.369537e-03	k: 2251	n:990000
Cons ci ratio: 3.054712e-03	ci left: 6.235846e-01	ci right 6.254934e-01	k: 618294	n:990000
KS ci ratio: 1.135667e-01	ci left: 1.133743e-03	ci right 1.271222e-03	k: 1189	n:990000
DENND2A   990000 perm   613 sec   (1616 perm/sec)   p_kst 1.201010e-03   p_cons 6.245394e-01   p_joint 2.273737e-03

Joint ci ratio: 8.209195e-02	ci left: 2.181587e-03	ci right 2.369315e-03	k: 2274	n:1000000
Cons ci ratio: 3.039779e-03	ci left: 6.235310e-01	ci right 6.254303e-01	k: 624481	n:1000000
KS ci ratio: 1.131399e-01	ci left: 1.131151e-03	ci right 1.267765e-03	k: 1198	n:1000000
DENND2A   1000000 perm   622 sec   (1606 perm/sec)   p_kst 1.198000e-03   p_cons 6.244810e-01   p_joint 2.274000e-03

Joint ci ratio: 8.162671e-02	ci left: 2.185203e-03	ci right 2.372125e-03	k: 2300	n:1010000
Cons ci ratio: 3.024909e-03	ci left: 6.235022e-01	ci right 6.253921e-01	k: 630692	n:1010000
KS ci ratio: 1.125314e-01	ci left: 1.132459e-03	ci right 1.268447e-03	k: 1211	n:1010000
DENND2A   1010000 perm   632 sec   (1597 perm/sec)   p_kst 1.199010e-03   p_cons 6.244475e-01   p_joint 2.277228e-03

Joint ci ratio: 8.141512e-02	ci left: 2.175304e-03	ci right 2.360874e-03	k: 2312	n:1020000
Cons ci ratio: 3.010110e-03	ci left: 6.234966e-01	ci right 6.253772e-01	k: 636926	n:1020000
KS ci ratio: 1.120701e-01	ci left: 1.130885e-03	ci right 1.266090e-03	k: 1221	n:1020000
DENND2A   1020000 perm   642 sec   (1588 perm/sec)   p_kst 1.197059e-03   p_cons 6.244373e-01   p_joint 2.266667e-03

Joint ci ratio: 8.161074e-02	ci left: 2.143721e-03	ci right 2.327058e-03	k: 2301	n:1030000
Cons ci ratio: 2.995390e-03	ci left: 6.235125e-01	ci right 6.253839e-01	k: 643182	n:1030000
KS ci ratio: 1.113434e-01	ci left: 1.135006e-03	ci right 1.269766e-03	k: 1237	n:1030000
DENND2A   1030000 perm   652 sec   (1579 perm/sec)   p_kst 1.200971e-03   p_cons 6.244485e-01   p_joint 2.233981e-03

Joint ci ratio: 8.127615e-02	ci left: 2.141005e-03	ci right 2.323323e-03	k: 2320	n:1040000
Cons ci ratio: 2.981025e-03	ci left: 6.235060e-01	ci right 6.253683e-01	k: 649415	n:1040000
KS ci ratio: 1.108965e-01	ci left: 1.133440e-03	ci right 1.267439e-03	k: 1247	n:1040000
DENND2A   1040000 perm   662 sec   (1570 perm/sec)   p_kst 1.199038e-03   p_cons 6.244375e-01   p_joint 2.230769e-03

Joint ci ratio: 8.152380e-02	ci left: 2.107551e-03	ci right 2.287593e-03	k: 2306	n:1050000
Cons ci ratio: 2.966388e-03	ci left: 6.235748e-01	ci right 6.254283e-01	k: 655727	n:1050000
KS ci ratio: 1.105430e-01	ci left: 1.130054e-03	ci right 1.263199e-03	k: 1255	n:1050000
DENND2A   1050000 perm   673 sec   (1561 perm/sec)   p_kst 1.195238e-03   p_cons 6.245019e-01   p_joint 2.196190e-03

Joint ci ratio: 8.159557e-02	ci left: 2.083971e-03	ci right 2.262163e-03	k: 2302	n:1060000
Cons ci ratio: 2.952886e-03	ci left: 6.234962e-01	ci right 6.253409e-01	k: 661884	n:1060000
KS ci ratio: 1.101492e-01	ci left: 1.127649e-03	ci right 1.260006e-03	k: 1264	n:1060000
DENND2A   1060000 perm   683 sec   (1552 perm/sec)   p_kst 1.192453e-03   p_cons 6.244189e-01   p_joint 2.171698e-03

Joint ci ratio: 8.120860e-02	ci left: 2.084637e-03	ci right 2.262000e-03	k: 2324	n:1070000
Cons ci ratio: 2.939050e-03	ci left: 6.235012e-01	ci right 6.253373e-01	k: 668129	n:1070000
KS ci ratio: 1.097165e-01	ci left: 1.126199e-03	ci right 1.257833e-03	k: 1274	n:1070000
DENND2A   1070000 perm   693 sec   (1543 perm/sec)   p_kst 1.190654e-03   p_cons 6.244196e-01   p_joint 2.171963e-03

Joint ci ratio: 8.087890e-02	ci left: 2.082571e-03	ci right 2.259005e-03	k: 2343	n:1080000
Cons ci ratio: 2.924945e-03	ci left: 6.235804e-01	ci right 6.254079e-01	k: 674454	n:1080000
KS ci ratio: 1.092888e-01	ci left: 1.124777e-03	ci right 1.255700e-03	k: 1284	n:1080000
DENND2A   1080000 perm   704 sec   (1534 perm/sec)   p_kst 1.188889e-03   p_cons 6.244944e-01   p_joint 2.169444e-03

Joint ci ratio: 8.050199e-02	ci left: 2.083241e-03	ci right 2.258871e-03	k: 2365	n:1090000
Cons ci ratio: 2.911075e-03	ci left: 6.236525e-01	ci right 6.254716e-01	k: 680773	n:1090000
KS ci ratio: 1.089083e-01	ci left: 1.122489e-03	ci right 1.252662e-03	k: 1293	n:1090000
DENND2A   1090000 perm   715 sec   (1525 perm/sec)   p_kst 1.186239e-03   p_cons 6.245624e-01   p_joint 2.169725e-03

Joint ci ratio: 8.011349e-02	ci left: 2.084791e-03	ci right 2.259665e-03	k: 2388	n:1100000
Cons ci ratio: 2.897631e-03	ci left: 6.236861e-01	ci right 6.254968e-01	k: 687051	n:1100000
KS ci ratio: 1.083237e-01	ci left: 1.124666e-03	ci right 1.254347e-03	k: 1307	n:1100000
DENND2A   1100000 perm   725 sec   (1516 perm/sec)   p_kst 1.188182e-03   p_cons 6.245918e-01   p_joint 2.170909e-03

Joint ci ratio: 7.981352e-02	ci left: 2.081901e-03	ci right 2.255848e-03	k: 2406	n:1110000
Cons ci ratio: 2.884310e-03	ci left: 6.237291e-01	ci right 6.255316e-01	k: 693340	n:1110000
KS ci ratio: 1.079121e-01	ci left: 1.123300e-03	ci right 1.252299e-03	k: 1317	n:1110000
DENND2A   1110000 perm   736 sec   (1508 perm/sec)   p_kst 1.186486e-03   p_cons 6.246306e-01   p_joint 2.167568e-03

Joint ci ratio: 7.958268e-02	ci left: 2.075564e-03	ci right 2.248456e-03	k: 2420	n:1120000
Cons ci ratio: 2.871407e-03	ci left: 6.237328e-01	ci right 6.255272e-01	k: 699586	n:1120000
KS ci ratio: 1.075863e-01	ci left: 1.120220e-03	ci right 1.248453e-03	k: 1325	n:1120000
DENND2A   1120000 perm   747 sec   (1500 perm/sec)   p_kst 1.183036e-03   p_cons 6.246304e-01   p_joint 2.160714e-03

Joint ci ratio: 8.001518e-02	ci left: 2.034644e-03	ci right 2.205092e-03	k: 2394	n:1130000
Cons ci ratio: 2.858556e-03	ci left: 6.237560e-01	ci right 6.255425e-01	k: 705854	n:1130000
KS ci ratio: 1.072634e-01	ci left: 1.117196e-03	ci right 1.244675e-03	k: 1333	n:1130000
DENND2A   1130000 perm   758 sec   (1491 perm/sec)   p_kst 1.179646e-03   p_cons 6.246496e-01   p_joint 2.118584e-03

Joint ci ratio: 7.780101e-02	ci left: 2.135465e-03	ci right 2.309185e-03	k: 2532	n:1140000
Cons ci ratio: 2.846020e-03	ci left: 6.237551e-01	ci right 6.255337e-01	k: 712095	n:1140000
KS ci ratio: 1.067842e-01	ci left: 1.117641e-03	ci right 1.244564e-03	k: 1345	n:1140000
DENND2A   1140000 perm   769 sec   (1483 perm/sec)   p_kst 1.179825e-03   p_cons 6.246447e-01   p_joint 2.221053e-03

Joint ci ratio: 7.751096e-02	ci left: 2.133097e-03	ci right 2.305947e-03	k: 2551	n:1150000
Cons ci ratio: 2.833863e-03	ci left: 6.237186e-01	ci right 6.254895e-01	k: 718295	n:1150000
KS ci ratio: 1.063505e-01	ci left: 1.117233e-03	ci right 1.243562e-03	k: 1356	n:1150000
DENND2A   1150000 perm   780 sec   (1475 perm/sec)   p_kst 1.179130e-03   p_cons 6.246043e-01   p_joint 2.218261e-03

Joint ci ratio: 7.745090e-02	ci left: 2.118089e-03	ci right 2.289584e-03	k: 2555	n:1160000
Cons ci ratio: 2.821684e-03	ci left: 6.237120e-01	ci right 6.254753e-01	k: 724529	n:1160000
KS ci ratio: 1.059997e-01	ci left: 1.115154e-03	ci right 1.240806e-03	k: 1365	n:1160000
DENND2A   1160000 perm   791 sec   (1467 perm/sec)   p_kst 1.176724e-03   p_cons 6.245940e-01   p_joint 2.202586e-03

Joint ci ratio: 7.710473e-02	ci left: 2.119264e-03	ci right 2.290053e-03	k: 2578	n:1170000
Cons ci ratio: 2.809881e-03	ci left: 6.236688e-01	ci right 6.254246e-01	k: 730720	n:1170000
KS ci ratio: 1.054988e-01	ci left: 1.116440e-03	ci right 1.241606e-03	k: 1378	n:1170000
DENND2A   1170000 perm   802 sec   (1459 perm/sec)   p_kst 1.177778e-03   p_cons 6.245470e-01   p_joint 2.203419e-03

Joint ci ratio: 7.674839e-02	ci left: 2.121252e-03	ci right 2.291376e-03	k: 2602	n:1180000
Cons ci ratio: 2.797512e-03	ci left: 6.237459e-01	ci right 6.254941e-01	k: 737052	n:1180000
KS ci ratio: 1.049296e-01	ci left: 1.119356e-03	ci right 1.244130e-03	k: 1393	n:1180000
DENND2A   1180000 perm   813 sec   (1451 perm/sec)   p_kst 1.180508e-03   p_cons 6.246203e-01   p_joint 2.205085e-03

Joint ci ratio: 7.724135e-02	ci left: 2.076227e-03	ci right 2.243858e-03	k: 2569	n:1190000
Cons ci ratio: 2.785964e-03	ci left: 6.237108e-01	ci right 6.254516e-01	k: 743252	n:1190000
KS ci ratio: 1.047422e-01	ci left: 1.114041e-03	ci right 1.237987e-03	k: 1398	n:1190000
DENND2A   1190000 perm   824 sec   (1444 perm/sec)   p_kst 1.174790e-03   p_cons 6.245815e-01   p_joint 2.158824e-03

Joint ci ratio: 7.686827e-02	ci left: 2.079357e-03	ci right 2.246393e-03	k: 2594	n:1200000
Cons ci ratio: 2.774350e-03	ci left: 6.237112e-01	ci right 6.254448e-01	k: 749494	n:1200000
KS ci ratio: 1.042958e-01	ci left: 1.114496e-03	ci right 1.237932e-03	k: 1410	n:1200000
DENND2A   1200000 perm   836 sec   (1436 perm/sec)   p_kst 1.175000e-03   p_cons 6.245783e-01   p_joint 2.161667e-03

Joint ci ratio: 7.650055e-02	ci left: 2.082438e-03	ci right 2.248885e-03	k: 2619	n:1210000
Cons ci ratio: 2.762842e-03	ci left: 6.237183e-01	ci right 6.254447e-01	k: 755744	n:1210000
KS ci ratio: 1.037821e-01	ci left: 1.116554e-03	ci right 1.239572e-03	k: 1424	n:1210000
DENND2A   1210000 perm   847 sec   (1429 perm/sec)   p_kst 1.176860e-03   p_cons 6.245818e-01   p_joint 2.164463e-03

Joint ci ratio: 7.645737e-02	ci left: 2.067780e-03	ci right 2.232959e-03	k: 2622	n:1220000
Cons ci ratio: 2.751567e-03	ci left: 6.237097e-01	ci right 6.254290e-01	k: 761975	n:1220000
KS ci ratio: 1.031683e-01	ci left: 1.120976e-03	ci right 1.243707e-03	k: 1441	n:1220000
DENND2A   1220000 perm   858 sec   (1421 perm/sec)   p_kst 1.181148e-03   p_cons 6.245697e-01   p_joint 2.149180e-03

Joint ci ratio: 7.695951e-02	ci left: 2.023855e-03	ci right 2.186634e-03	k: 2588	n:1230000
Cons ci ratio: 2.740044e-03	ci left: 6.237671e-01	ci right 6.254794e-01	k: 768287	n:1230000
KS ci ratio: 1.026711e-01	ci left: 1.122952e-03	ci right 1.245270e-03	k: 1455	n:1230000
DENND2A   1230000 perm   870 sec   (1414 perm/sec)   p_kst 1.182927e-03   p_cons 6.246236e-01   p_joint 2.104065e-03

Joint ci ratio: 7.687096e-02	ci left: 2.012279e-03	ci right 2.173932e-03	k: 2594	n:1240000
Cons ci ratio: 2.729288e-03	ci left: 6.237164e-01	ci right 6.254218e-01	k: 774466	n:1240000
KS ci ratio: 1.023553e-01	ci left: 1.120968e-03	ci right 1.242672e-03	k: 1464	n:1240000
DENND2A   1240000 perm   882 sec   (1406 perm/sec)   p_kst 1.180645e-03   p_cons 6.245694e-01   p_joint 2.091935e-03

Joint ci ratio: 7.664993e-02	ci left: 2.007950e-03	ci right 2.168771e-03	k: 2609	n:1250000
Cons ci ratio: 2.718710e-03	ci left: 6.236576e-01	ci right 6.253562e-01	k: 780634	n:1250000
KS ci ratio: 1.020425e-01	ci left: 1.119016e-03	ci right 1.240114e-03	k: 1473	n:1250000
DENND2A   1250000 perm   893 sec   (1399 perm/sec)   p_kst 1.178400e-03   p_cons 6.245072e-01   p_joint 2.087200e-03

Joint ci ratio: 7.634341e-02	ci left: 2.008362e-03	ci right 2.168544e-03	k: 2630	n:1260000
Cons ci ratio: 2.707895e-03	ci left: 6.236617e-01	ci right 6.253536e-01	k: 786880	n:1260000
KS ci ratio: 1.016296e-01	ci left: 1.119416e-03	ci right 1.240039e-03	k: 1485	n:1260000
DENND2A   1260000 perm   907 sec   (1389 perm/sec)   p_kst 1.178571e-03   p_cons 6.245079e-01   p_joint 2.087302e-03

Joint ci ratio: 7.380144e-02	ci left: 2.134716e-03	ci right 2.299064e-03	k: 2814	n:1270000
Cons ci ratio: 2.697300e-03	ci left: 6.236500e-01	ci right 6.253352e-01	k: 793106	n:1270000
KS ci ratio: 1.012217e-01	ci left: 1.119811e-03	ci right 1.239963e-03	k: 1497	n:1270000
DENND2A   1270000 perm   921 sec   (1378 perm/sec)   p_kst 1.178740e-03   p_cons 6.244929e-01   p_joint 2.215748e-03

Joint ci ratio: 7.102388e-02	ci left: 2.289877e-03	ci right 2.459262e-03	k: 3038	n:1280000
Cons ci ratio: 2.686890e-03	ci left: 6.236276e-01	ci right 6.253062e-01	k: 799318	n:1280000
KS ci ratio: 1.005192e-01	ci left: 1.127055e-03	ci right 1.247095e-03	k: 1518	n:1280000
DENND2A   1280000 perm   935 sec   (1369 perm/sec)   p_kst 1.185937e-03   p_cons 6.244672e-01   p_joint 2.373438e-03

Joint ci ratio: 7.072193e-02	ci left: 2.291924e-03	ci right 2.460710e-03	k: 3064	n:1290000
Cons ci ratio: 2.676379e-03	ci left: 6.236443e-01	ci right 6.253164e-01	k: 805580	n:1290000
KS ci ratio: 1.000918e-01	ci left: 1.128143e-03	ci right 1.247758e-03	k: 1531	n:1290000
DENND2A   1290000 perm   948 sec   (1360 perm/sec)   p_kst 1.186822e-03   p_cons 6.244806e-01   p_joint 2.375194e-03

Joint ci ratio: 7.042380e-02	ci left: 2.293941e-03	ci right 2.462135e-03	k: 3090	n:1300000
Cons ci ratio: 2.665911e-03	ci left: 6.236746e-01	ci right 6.253402e-01	k: 811860	n:1300000
KS ci ratio: 9.957302e-02	ci left: 1.131465e-03	ci right 1.250775e-03	k: 1547	n:1300000
DENND2A   1300000 perm   960 sec   (1354 perm/sec)   p_kst 1.190000e-03   p_cons 6.245077e-01   p_joint 2.376923e-03

Outputting figure to mutsig2_images.part000000000049/DENND2A.13_3102_1300000_0.00119_0.62451_0.0023769.png
                gene_name: DENND2A
               theta_stop: 0.100 
                    nperm: 1300000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 6 percent done.
DENND5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
DENND5B   10000 perm   2 sec   (4060 perm/sec)   p_kst 1.232000e-01   p_cons 7.823000e-01   p_joint 1.964000e-01

Joint ci ratio: 5.697197e-02	ci left: 1.859185e-01	ci right 1.968714e-01	k: 3827	n:20000
Cons ci ratio: 1.528174e-02	ci left: 7.609768e-01	ci right 7.727456e-01	k: 15338	n:20000
KS ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
DENND5B   20000 perm   5 sec   (3753 perm/sec)   p_kst 1.212000e-01   p_cons 7.669000e-01   p_joint 1.913500e-01

Outputting figure to mutsig2_images.part000000000049/DENND5B.9_3909_20000_0.1212_0.7669_0.19135.png
                gene_name: DENND5B
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 8 percent done.
DENND2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
Cons ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
KS ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
DENND2C   10000 perm   2 sec   (4606 perm/sec)   p_kst 7.388000e-01   p_cons 5.189000e-01   p_joint 7.603000e-01

Outputting figure to mutsig2_images.part000000000049/DENND2C.8_2684_10000_0.7388_0.5189_0.7603.png
                gene_name: DENND2C
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 10 percent done.
DENND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 3.880420e-02	ci left: 4.951504e-01	ci right 5.148467e-01	k: 5050	n:10000
KS ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
DENND3   10000 perm   2 sec   (4733 perm/sec)   p_kst 2.270000e-02   p_cons 5.050000e-01   p_joint 9.330000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 2.780255e-02	ci left: 4.914962e-01	ci right 5.054043e-01	k: 9969	n:20000
KS ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
DENND3   20000 perm   5 sec   (4304 perm/sec)   p_kst 2.215000e-02   p_cons 4.984500e-01   p_joint 5.720000e-02

Joint ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
Cons ci ratio: 2.254066e-02	ci left: 4.963255e-01	ci right 5.076741e-01	k: 15060	n:30000
KS ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
DENND3   30000 perm   7 sec   (4118 perm/sec)   p_kst 2.220000e-02   p_cons 5.020000e-01   p_joint 6.513333e-02

Joint ci ratio: 8.402764e-02	ci left: 4.942771e-02	ci right 5.378767e-02	k: 2063	n:40000
Cons ci ratio: 1.985771e-02	ci left: 4.885386e-01	ci right 4.983623e-01	k: 19738	n:40000
KS ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
DENND3   40000 perm   10 sec   (3985 perm/sec)   p_kst 2.207500e-02   p_cons 4.934500e-01   p_joint 5.157500e-02

Joint ci ratio: 8.360042e-02	ci left: 4.035642e-02	ci right 4.389699e-02	k: 2105	n:50000
Cons ci ratio: 1.774827e-02	ci left: 4.894282e-01	ci right 4.982125e-01	k: 24691	n:50000
KS ci ratio: 1.161306e-01	ci left: 2.098468e-02	ci right 2.359120e-02	k: 1113	n:50000
DENND3   50000 perm   13 sec   (3877 perm/sec)   p_kst 2.226000e-02   p_cons 4.938200e-01   p_joint 4.210000e-02

Joint ci ratio: 6.747845e-02	ci left: 5.145031e-02	ci right 5.505972e-02	k: 3194	n:60000
Cons ci ratio: 1.620801e-02	ci left: 4.896250e-01	ci right 4.976423e-01	k: 29618	n:60000
KS ci ratio: 1.061668e-01	ci left: 2.103593e-02	ci right 2.341060e-02	k: 1332	n:60000
DENND3   60000 perm   16 sec   (3771 perm/sec)   p_kst 2.220000e-02   p_cons 4.936333e-01   p_joint 5.323333e-02

Joint ci ratio: 6.694075e-02	ci left: 4.513457e-02	ci right 4.827457e-02	k: 3268	n:70000
Cons ci ratio: 1.497078e-02	ci left: 4.910894e-01	ci right 4.985111e-01	k: 34636	n:70000
KS ci ratio: 1.008467e-01	ci left: 2.006202e-02	ci right 2.220650e-02	k: 1478	n:70000
DENND3   70000 perm   19 sec   (3709 perm/sec)   p_kst 2.111429e-02   p_cons 4.948000e-01   p_joint 4.668571e-02

Joint ci ratio: 6.545194e-02	ci left: 4.150621e-02	ci right 4.432706e-02	k: 3432	n:80000
Cons ci ratio: 1.400637e-02	ci left: 4.912419e-01	ci right 4.981835e-01	k: 39577	n:80000
KS ci ratio: 9.474339e-02	ci left: 1.995652e-02	ci right 2.195344e-02	k: 1675	n:80000
DENND3   80000 perm   22 sec   (3647 perm/sec)   p_kst 2.093750e-02   p_cons 4.947125e-01   p_joint 4.290000e-02

Outputting figure to mutsig2_images.part000000000049/DENND3.7_3685_80000_0.020938_0.49471_0.0429.png
                gene_name: DENND3
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 12 percent done.
DENND4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
KS ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
DENND4C   10000 perm   2 sec   (4546 perm/sec)   p_kst 6.115000e-01   p_cons 4.129000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000049/DENND4C.7_5134_10000_0.6115_0.4129_0.8588.png
                gene_name: DENND4C
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 14 percent done.
DENND5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
Cons ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
KS ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
DENND5A   10000 perm   2 sec   (4866 perm/sec)   p_kst 5.843000e-01   p_cons 1.840000e-02   p_joint 6.320000e-02

Joint ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
Cons ci ratio: 1.986352e-01	ci left: 1.720062e-02	ci right 2.104099e-02	k: 381	n:20000
KS ci ratio: 2.352807e-02	ci left: 5.743261e-01	ci right 5.880503e-01	k: 11624	n:20000
DENND5A   20000 perm   5 sec   (4393 perm/sec)   p_kst 5.812000e-01   p_cons 1.905000e-02   p_joint 1.170500e-01

Joint ci ratio: 6.058193e-02	ci left: 1.187442e-01	ci right 1.261958e-01	k: 3673	n:30000
Cons ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
KS ci ratio: 1.914002e-02	ci left: 5.773961e-01	ci right 5.885878e-01	k: 17490	n:30000
DENND5A   30000 perm   7 sec   (4207 perm/sec)   p_kst 5.830000e-01   p_cons 1.876667e-02   p_joint 1.224333e-01

Joint ci ratio: 5.160298e-02	ci left: 1.228121e-01	ci right 1.293423e-01	k: 5042	n:40000
Cons ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
KS ci ratio: 1.622973e-02	ci left: 5.883919e-01	ci right 5.980446e-01	k: 23729	n:40000
DENND5A   40000 perm   10 sec   (4090 perm/sec)   p_kst 5.932250e-01   p_cons 1.942500e-02   p_joint 1.260500e-01

Joint ci ratio: 4.860795e-02	ci left: 1.122953e-01	ci right 1.179095e-01	k: 5754	n:50000
Cons ci ratio: 1.252293e-01	ci left: 1.801515e-02	ci right 2.044113e-02	k: 960	n:50000
KS ci ratio: 1.453580e-02	ci left: 5.882579e-01	ci right 5.968914e-01	k: 29629	n:50000
DENND5A   50000 perm   13 sec   (3964 perm/sec)   p_kst 5.925800e-01   p_cons 1.920000e-02   p_joint 1.150800e-01

Joint ci ratio: 4.736327e-02	ci left: 1.000346e-01	ci right 1.049040e-01	k: 6147	n:60000
Cons ci ratio: 1.118798e-01	ci left: 1.892713e-02	ci right 2.118629e-02	k: 1202	n:60000
KS ci ratio: 1.328118e-02	ci left: 5.882051e-01	ci right 5.960860e-01	k: 35529	n:60000
DENND5A   60000 perm   15 sec   (3889 perm/sec)   p_kst 5.921500e-01   p_cons 2.003333e-02   p_joint 1.024500e-01

Joint ci ratio: 4.426592e-02	ci left: 9.850844e-02	ci right 1.029819e-01	k: 7051	n:70000
Cons ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
KS ci ratio: 1.231148e-02	ci left: 5.878906e-01	ci right 5.951875e-01	k: 41408	n:70000
DENND5A   70000 perm   18 sec   (3821 perm/sec)   p_kst 5.915429e-01   p_cons 2.007143e-02   p_joint 1.007286e-01

Joint ci ratio: 4.326215e-02	ci left: 9.105787e-02	ci right 9.509670e-02	k: 7445	n:80000
Cons ci ratio: 9.707640e-02	ci left: 1.900445e-02	ci right 2.095558e-02	k: 1597	n:80000
KS ci ratio: 1.152185e-02	ci left: 5.878965e-01	ci right 5.947219e-01	k: 47305	n:80000
DENND5A   80000 perm   21 sec   (3764 perm/sec)   p_kst 5.913125e-01   p_cons 1.996250e-02   p_joint 9.306250e-02

Outputting figure to mutsig2_images.part000000000049/DENND5A.7_3956_80000_0.59131_0.019963_0.093063.png
                gene_name: DENND5A
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.095 

Current progress: 16 percent done.
DGKG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
Cons ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
DGKG   10000 perm   2 sec   (5364 perm/sec)   p_kst 3.390000e-01   p_cons 2.055000e-01   p_joint 2.878000e-01

Outputting figure to mutsig2_images.part000000000049/DGKG.7_2472_10000_0.339_0.2055_0.2878.png
                gene_name: DGKG
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 18 percent done.
DEFB125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
Cons ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
KS ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
DEFB125   10000 perm   2 sec   (6261 perm/sec)   p_kst 9.648000e-01   p_cons 1.625000e-01   p_joint 4.526000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB125.6_479_10000_0.9648_0.1625_0.4526.png
                gene_name: DEFB125
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 20 percent done.
DFNB31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
Cons ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
DFNB31   10000 perm   2 sec   (5279 perm/sec)   p_kst 2.556000e-01   p_cons 5.461000e-01   p_joint 4.823000e-01

Outputting figure to mutsig2_images.part000000000049/DFNB31.6_2772_10000_0.2556_0.5461_0.4823.png
                gene_name: DFNB31
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 22 percent done.
DEFB112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
Cons ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
DEFB112   10000 perm   2 sec   (5953 perm/sec)   p_kst 8.001000e-01   p_cons 2.136000e-01   p_joint 7.008000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB112.5_349_10000_0.8001_0.2136_0.7008.png
                gene_name: DEFB112
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 24 percent done.
DENND1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
Cons ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
KS ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
DENND1A   10000 perm   2 sec   (5366 perm/sec)   p_kst 2.783000e-01   p_cons 6.301000e-01   p_joint 4.469000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1A.5_3225_10000_0.2783_0.6301_0.4469.png
                gene_name: DENND1A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 26 percent done.
DENND1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
Cons ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
KS ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
DENND1B   10000 perm   2 sec   (5616 perm/sec)   p_kst 7.215000e-01   p_cons 4.721000e-01   p_joint 8.247000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1B.5_2461_10000_0.7215_0.4721_0.8247.png
                gene_name: DENND1B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 28 percent done.
DGKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
KS ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
DGKA   10000 perm   2 sec   (5488 perm/sec)   p_kst 1.392000e-01   p_cons 2.645000e-01   p_joint 2.500000e-01

Outputting figure to mutsig2_images.part000000000049/DGKA.5_2300_10000_0.1392_0.2645_0.25.png
                gene_name: DGKA
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 30 percent done.
DGKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 2.621199e-02	ci left: 6.818387e-01	ci right 7.000499e-01	k: 6910	n:10000
DGKE   10000 perm   2 sec   (5627 perm/sec)   p_kst 6.910000e-01   p_cons 4.100000e-02   p_joint 2.895000e-01

Joint ci ratio: 4.347125e-02	ci left: 2.827238e-01	ci right 2.953376e-01	k: 5780	n:20000
Cons ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
KS ci ratio: 1.785875e-02	ci left: 7.002853e-01	ci right 7.129546e-01	k: 14133	n:20000
DGKE   20000 perm   4 sec   (5000 perm/sec)   p_kst 7.066500e-01   p_cons 4.025000e-02   p_joint 2.890000e-01

Joint ci ratio: 3.474193e-02	ci left: 2.927280e-01	ci right 3.031112e-01	k: 8937	n:30000
Cons ci ratio: 1.093625e-01	ci left: 3.881651e-02	ci right 4.333958e-02	k: 1231	n:30000
KS ci ratio: 1.505030e-02	ci left: 6.881138e-01	ci right 6.985821e-01	k: 20801	n:30000
DGKE   30000 perm   6 sec   (4776 perm/sec)   p_kst 6.933667e-01   p_cons 4.103333e-02   p_joint 2.979000e-01

Joint ci ratio: 3.261677e-02	ci left: 2.609532e-01	ci right 2.696309e-01	k: 10611	n:40000
Cons ci ratio: 9.023896e-02	ci left: 4.301351e-02	ci right 4.710286e-02	k: 1801	n:40000
KS ci ratio: 1.301306e-02	ci left: 6.895077e-01	ci right 6.985641e-01	k: 27762	n:40000
DGKE   40000 perm   9 sec   (4644 perm/sec)   p_kst 6.940500e-01   p_cons 4.502500e-02   p_joint 2.652750e-01

Outputting figure to mutsig2_images.part000000000049/DGKE.5_1748_40000_0.69405_0.045025_0.26527.png
                gene_name: DGKE
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 32 percent done.
DGKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
Cons ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
KS ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
DGKH   10000 perm   2 sec   (4748 perm/sec)   p_kst 9.120000e-02   p_cons 6.766000e-01   p_joint 2.517000e-01

Joint ci ratio: 5.697197e-02	ci left: 1.859185e-01	ci right 1.968714e-01	k: 3827	n:20000
Cons ci ratio: 1.914971e-02	ci left: 6.703683e-01	ci right 6.833802e-01	k: 13538	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
DGKH   20000 perm   5 sec   (4317 perm/sec)   p_kst 9.440000e-02   p_cons 6.769000e-01   p_joint 1.913500e-01

Outputting figure to mutsig2_images.part000000000049/DGKH.5_3783_20000_0.0944_0.6769_0.19135.png
                gene_name: DGKH
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 34 percent done.
DGKK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
Cons ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
KS ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
DGKK   10000 perm   2 sec   (4665 perm/sec)   p_kst 9.243000e-01   p_cons 1.229000e-01   p_joint 2.655000e-01

Joint ci ratio: 3.963468e-02	ci left: 3.218917e-01	ci right 3.349582e-01	k: 6568	n:20000
Cons ci ratio: 7.104720e-02	ci left: 1.273868e-01	ci right 1.368204e-01	k: 2641	n:20000
KS ci ratio: 7.806134e-03	ci left: 9.228472e-01	ci right 9.301283e-01	k: 18531	n:20000
DGKK   20000 perm   5 sec   (4249 perm/sec)   p_kst 9.265500e-01   p_cons 1.320500e-01   p_joint 3.284000e-01

Outputting figure to mutsig2_images.part000000000049/DGKK.5_3927_20000_0.92655_0.13205_0.3284.png
                gene_name: DGKK
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 36 percent done.
DEFB116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
Cons ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
DEFB116   10000 perm   2 sec   (6614 perm/sec)   p_kst 2.257000e-01   p_cons 7.938000e-01   p_joint 5.659000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB116.4_316_10000_0.2257_0.7938_0.5659.png
                gene_name: DEFB116
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 38 percent done.
DEPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
Cons ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
KS ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
DEPDC1   10000 perm   2 sec   (5364 perm/sec)   p_kst 5.794000e-01   p_cons 1.348000e-01   p_joint 2.584000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC1.4_2484_10000_0.5794_0.1348_0.2584.png
                gene_name: DEPDC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 40 percent done.
DEPDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
DEPDC7   10000 perm   2 sec   (5495 perm/sec)   p_kst 6.458000e-01   p_cons 4.601000e-01   p_joint 9.493000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC7.4_1622_10000_0.6458_0.4601_0.9493.png
                gene_name: DEPDC7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 42 percent done.
DET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
KS ci ratio: 8.497168e-03	ci left: 9.509609e-01	ci right 9.591714e-01	k: 9552	n:10000
DET1   10000 perm   2 sec   (5676 perm/sec)   p_kst 9.552000e-01   p_cons 4.910000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DET1.4_1706_10000_0.9552_0.491_1.png
                gene_name: DET1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
DGCR14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
Cons ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
KS ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
DGCR14   10000 perm   2 sec   (5689 perm/sec)   p_kst 3.239000e-01   p_cons 2.734000e-01   p_joint 4.325000e-01

Outputting figure to mutsig2_images.part000000000049/DGCR14.4_1471_10000_0.3239_0.2734_0.4325.png
                gene_name: DGCR14
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
DEFB115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
Cons ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
KS ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
DEFB115   10000 perm   2 sec   (6549 perm/sec)   p_kst 2.193000e-01   p_cons 2.553000e-01   p_joint 2.124000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB115.3_275_10000_0.2193_0.2553_0.2124.png
                gene_name: DEFB115
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 48 percent done.
DEGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
Cons ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
DEGS1   10000 perm   2 sec   (6266 perm/sec)   p_kst 3.305000e-01   p_cons 4.386000e-01   p_joint 4.802000e-01

Outputting figure to mutsig2_images.part000000000049/DEGS1.3_984_10000_0.3305_0.4386_0.4802.png
                gene_name: DEGS1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 50 percent done.
DENND4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
Cons ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
KS ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
DENND4A   10000 perm   2 sec   (4472 perm/sec)   p_kst 4.789000e-01   p_cons 3.868000e-01   p_joint 6.413000e-01

Outputting figure to mutsig2_images.part000000000049/DENND4A.3_5845_10000_0.4789_0.3868_0.6413.png
                gene_name: DENND4A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
DEPDC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
DEPDC1B   10000 perm   2 sec   (5975 perm/sec)   p_kst 5.207000e-01   p_cons 4.846000e-01   p_joint 6.083000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC1B.3_1634_10000_0.5207_0.4846_0.6083.png
                gene_name: DEPDC1B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 54 percent done.
DEPDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
Cons ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
KS ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
DEPDC6   10000 perm   2 sec   (6003 perm/sec)   p_kst 2.811000e-01   p_cons 5.141000e-01   p_joint 3.157000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC6.3_1266_10000_0.2811_0.5141_0.3157.png
                gene_name: DEPDC6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 56 percent done.
DFFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
DFFA   10000 perm   2 sec   (6074 perm/sec)   p_kst 2.535000e-01   p_cons 3.607000e-01   p_joint 3.487000e-01

Outputting figure to mutsig2_images.part000000000049/DFFA.3_1044_10000_0.2535_0.3607_0.3487.png
                gene_name: DFFA
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
DGKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
Cons ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
KS ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
DGKD   10000 perm   2 sec   (5102 perm/sec)   p_kst 9.210000e-02   p_cons 2.598000e-01   p_joint 8.530000e-02

Joint ci ratio: 5.910097e-02	ci left: 1.749444e-01	ci right 1.856487e-01	k: 3605	n:20000
Cons ci ratio: 4.690258e-02	ci left: 2.527405e-01	ci right 2.649297e-01	k: 5176	n:20000
KS ci ratio: 8.607760e-02	ci left: 8.989170e-02	ci right 9.802679e-02	k: 1878	n:20000
DGKD   20000 perm   4 sec   (4559 perm/sec)   p_kst 9.390000e-02   p_cons 2.588000e-01   p_joint 1.802500e-01

Outputting figure to mutsig2_images.part000000000049/DGKD.3_3789_20000_0.0939_0.2588_0.18025.png
                gene_name: DGKD
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 60 percent done.
DGKZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
Cons ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
KS ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
DGKZ   10000 perm   2 sec   (5151 perm/sec)   p_kst 4.560000e-02   p_cons 3.296000e-01   p_joint 1.030000e-01

Joint ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
Cons ci ratio: 4.025830e-02	ci left: 3.150782e-01	ci right 3.280737e-01	k: 6431	n:20000
KS ci ratio: 1.250922e-01	ci left: 4.386539e-02	ci right 4.976727e-02	k: 935	n:20000
DGKZ   20000 perm   4 sec   (4604 perm/sec)   p_kst 4.675000e-02   p_cons 3.215500e-01   p_joint 5.330000e-02

Joint ci ratio: 5.009635e-02	ci left: 1.652369e-01	ci right 1.737606e-01	k: 5084	n:30000
Cons ci ratio: 3.275063e-02	ci left: 3.178751e-01	ci right 3.284925e-01	k: 9695	n:30000
KS ci ratio: 1.019858e-01	ci left: 4.453486e-02	ci right 4.935337e-02	k: 1407	n:30000
DGKZ   30000 perm   7 sec   (4365 perm/sec)   p_kst 4.690000e-02   p_cons 3.231667e-01   p_joint 1.694667e-01

Joint ci ratio: 5.301384e-02	ci left: 1.170530e-01	ci right 1.234522e-01	k: 4809	n:40000
Cons ci ratio: 2.852411e-02	ci left: 3.161266e-01	ci right 3.252994e-01	k: 12828	n:40000
KS ci ratio: 8.920705e-02	ci left: 4.399207e-02	ci right 4.812415e-02	k: 1841	n:40000
DGKZ   40000 perm   9 sec   (4232 perm/sec)   p_kst 4.602500e-02   p_cons 3.207000e-01   p_joint 1.202250e-01

Outputting figure to mutsig2_images.part000000000049/DGKZ.3_3925_40000_0.046025_0.3207_0.12022.png
                gene_name: DGKZ
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
DEFA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
KS ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
DEFA6   10000 perm   1 sec   (6911 perm/sec)   p_kst 9.099000e-01   p_cons 4.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEFA6.2_311_10000_0.9099_0.4844_1.png
                gene_name: DEFA6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
DEFB108B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
Cons ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
KS ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
DEFB108B   10000 perm   1 sec   (6908 perm/sec)   p_kst 2.400000e-01   p_cons 3.126000e-01   p_joint 3.946000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB108B.2_229_10000_0.24_0.3126_0.3946.png
                gene_name: DEFB108B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 66 percent done.
DEFB110
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 68 percent done.
DEFB113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
DEFB113   10000 perm   1 sec   (6885 perm/sec)   p_kst 2.532000e-01   p_cons 6.480000e-02   p_joint 1.425000e-01

Joint ci ratio: 6.352209e-02	ci left: 1.548452e-01	ci right 1.650539e-01	k: 3198	n:20000
Cons ci ratio: 1.064458e-01	ci left: 6.011022e-02	ci right 6.691736e-02	k: 1269	n:20000
KS ci ratio: 4.812510e-02	ci left: 2.430683e-01	ci right 2.551047e-01	k: 4981	n:20000
DEFB113   20000 perm   3 sec   (5956 perm/sec)   p_kst 2.490500e-01   p_cons 6.345000e-02   p_joint 1.599000e-01

Joint ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
Cons ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
KS ci ratio: 3.946287e-02	ci left: 2.425914e-01	ci right 2.523909e-01	k: 7424	n:30000
DEFB113   30000 perm   5 sec   (5642 perm/sec)   p_kst 2.474667e-01   p_cons 6.370000e-02   p_joint 6.243333e-02

Outputting figure to mutsig2_images.part000000000049/DEFB113.2_249_30000_0.24747_0.0637_0.062433.png
                gene_name: DEFB113
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 70 percent done.
DEFB136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
Cons ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
KS ci ratio: 5.251744e-02	ci left: 3.482980e-01	ci right 3.671849e-01	k: 3577	n:10000
DEFB136   10000 perm   1 sec   (7227 perm/sec)   p_kst 3.577000e-01   p_cons 8.250000e-02   p_joint 7.855000e-01

Joint ci ratio: 1.450855e-02	ci left: 7.791897e-01	ci right 7.906274e-01	k: 15699	n:20000
Cons ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
KS ci ratio: 3.748536e-02	ci left: 3.468215e-01	ci right 3.601211e-01	k: 7069	n:20000
DEFB136   20000 perm   3 sec   (6287 perm/sec)   p_kst 3.534500e-01   p_cons 8.130000e-02   p_joint 7.849500e-01

Outputting figure to mutsig2_images.part000000000049/DEFB136.2_243_20000_0.35345_0.0813_0.78495.png
                gene_name: DEFB136
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 72 percent done.
DENND1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
DENND1C   10000 perm   2 sec   (5821 perm/sec)   p_kst 9.099000e-01   p_cons 7.190000e-01   p_joint 9.822000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1C.2_2498_10000_0.9099_0.719_0.9822.png
                gene_name: DENND1C
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 74 percent done.
DENND2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
KS ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
DENND2D   10000 perm   2 sec   (6521 perm/sec)   p_kst 7.890000e-02   p_cons 5.965000e-01   p_joint 1

Joint ci ratio: 5.227558e-02	ci left: 2.136807e-01	ci right 2.252010e-01	k: 4388	n:20000
Cons ci ratio: 2.286499e-02	ci left: 5.882084e-01	ci right 6.018639e-01	k: 11901	n:20000
KS ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
DENND2D   20000 perm   4 sec   (5634 perm/sec)   p_kst 8.250000e-02   p_cons 5.950500e-01   p_joint 2.194000e-01

Outputting figure to mutsig2_images.part000000000049/DENND2D.2_1464_20000_0.0825_0.59505_0.2194.png
                gene_name: DENND2D
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 76 percent done.
DENND4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
KS ci ratio: 1.238473e-02	ci left: 9.035015e-01	ci right 9.148589e-01	k: 9093	n:10000
DENND4B   10000 perm   2 sec   (5143 perm/sec)   p_kst 9.093000e-01   p_cons 5.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DENND4B.2_4599_10000_0.9093_0.5525_1.png
                gene_name: DENND4B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
DEPDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
KS ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
DEPDC4   10000 perm   2 sec   (6623 perm/sec)   p_kst 9.418000e-01   p_cons 1.236000e-01   p_joint 1

Joint ci ratio: 4.650258e-02	ci left: 2.560150e-01	ci right 2.682542e-01	k: 5242	n:20000
Cons ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
KS ci ratio: 6.740725e-03	ci left: 9.409287e-01	ci right 9.473414e-01	k: 18884	n:20000
DEPDC4   20000 perm   3 sec   (5887 perm/sec)   p_kst 9.442000e-01   p_cons 1.255500e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC4.2_905_20000_0.9442_0.12555_0.2621.png
                gene_name: DEPDC4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 80 percent done.
DEPDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 2.086125e-02	ci left: 7.710409e-01	ci right 7.873961e-01	k: 7793	n:10000
DEPDC5   10000 perm   2 sec   (4937 perm/sec)   p_kst 7.793000e-01   p_cons 4.090000e-02   p_joint 1.283000e-01

Joint ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
Cons ci ratio: 1.330417e-01	ci left: 3.882614e-02	ci right 4.440812e-02	k: 831	n:20000
KS ci ratio: 1.479605e-02	ci left: 7.724274e-01	ci right 7.839916e-01	k: 15565	n:20000
DEPDC5   20000 perm   4 sec   (4448 perm/sec)   p_kst 7.782500e-01   p_cons 4.155000e-02   p_joint 1.317500e-01

Joint ci ratio: 4.677468e-02	ci left: 1.852440e-01	ci right 1.941495e-01	k: 5690	n:30000
Cons ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
KS ci ratio: 1.208498e-02	ci left: 7.733881e-01	ci right 7.828247e-01	k: 23344	n:30000
DEPDC5   30000 perm   7 sec   (4250 perm/sec)   p_kst 7.781333e-01   p_cons 4.110000e-02   p_joint 1.896667e-01

Joint ci ratio: 5.963114e-02	ci left: 9.458513e-02	ci right 1.004234e-01	k: 3899	n:40000
Cons ci ratio: 9.401685e-02	ci left: 3.968851e-02	ci right 4.362838e-02	k: 1665	n:40000
KS ci ratio: 1.045630e-02	ci left: 7.743476e-01	ci right 7.825119e-01	k: 31138	n:40000
DEPDC5   40000 perm   10 sec   (4135 perm/sec)   p_kst 7.784500e-01   p_cons 4.162500e-02   p_joint 9.747500e-02

Outputting figure to mutsig2_images.part000000000049/DEPDC5.2_4971_40000_0.77845_0.041625_0.097475.png
                gene_name: DEPDC5
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 82 percent done.
DERL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
DERL1   10000 perm   1 sec   (6694 perm/sec)   p_kst 4.880000e-02   p_cons 8.760000e-01   p_joint 5.039000e-01

Joint ci ratio: 9.120586e-02	ci left: 8.068090e-02	ci right 8.844038e-02	k: 1690	n:20000
Cons ci ratio: 1.029731e-02	ci left: 8.741460e-01	ci right 8.832435e-01	k: 17575	n:20000
KS ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
DERL1   20000 perm   3 sec   (5875 perm/sec)   p_kst 4.655000e-02   p_cons 8.787500e-01   p_joint 8.450000e-02

Joint ci ratio: 5.225854e-02	ci left: 1.537903e-01	ci right 1.620761e-01	k: 4737	n:30000
Cons ci ratio: 8.402830e-03	ci left: 8.751211e-01	ci right 8.825387e-01	k: 26366	n:30000
KS ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
DERL1   30000 perm   5 sec   (5528 perm/sec)   p_kst 4.540000e-02   p_cons 8.788667e-01   p_joint 1.579000e-01

Joint ci ratio: 6.201158e-02	ci left: 8.800155e-02	ci right 9.365802e-02	k: 3632	n:40000
Cons ci ratio: 7.310785e-03	ci left: 8.746263e-01	ci right 8.810687e-01	k: 35115	n:40000
KS ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
DERL1   40000 perm   8 sec   (5330 perm/sec)   p_kst 4.500000e-02   p_cons 8.778750e-01   p_joint 9.080000e-02

Outputting figure to mutsig2_images.part000000000049/DERL1.2_788_40000_0.045_0.87787_0.0908.png
                gene_name: DERL1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 84 percent done.
DFFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
DFFB   10000 perm   2 sec   (6547 perm/sec)   p_kst 9.806000e-01   p_cons 4.846000e-01   p_joint 8.504000e-01

Outputting figure to mutsig2_images.part000000000049/DFFB.2_1045_10000_0.9806_0.4846_0.8504.png
                gene_name: DFFB
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 86 percent done.
DFNB59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568697e-02	ci left: 8.550847e-01	ci right 8.687038e-01	k: 8620	n:10000
Cons ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
KS ci ratio: 3.877317e-02	ci left: 4.955504e-01	ci right 5.152465e-01	k: 5054	n:10000
DFNB59   10000 perm   2 sec   (6452 perm/sec)   p_kst 5.054000e-01   p_cons 2.402000e-01   p_joint 8.620000e-01

Outputting figure to mutsig2_images.part000000000049/DFNB59.2_1083_10000_0.5054_0.2402_0.862.png
                gene_name: DFNB59
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 88 percent done.
DGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 8.243893e-02	ci left: 1.767434e-01	ci right 1.920409e-01	k: 1843	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
DGAT1   10000 perm   2 sec   (6505 perm/sec)   p_kst 3.274000e-01   p_cons 1.843000e-01   p_joint 1.822000e-01

Outputting figure to mutsig2_images.part000000000049/DGAT1.2_1535_10000_0.3274_0.1843_0.1822.png
                gene_name: DGAT1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 90 percent done.
DGCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
KS ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
DGCR2   10000 perm   2 sec   (6147 perm/sec)   p_kst 4.834000e-01   p_cons 3.480000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DGCR2.2_1693_10000_0.4834_0.348_1.png
                gene_name: DGCR2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
DGUOK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
DGUOK   10000 perm   2 sec   (6660 perm/sec)   p_kst 6.446000e-01   p_cons 1.863000e-01   p_joint 2.210000e-01

Outputting figure to mutsig2_images.part000000000049/DGUOK.2_862_10000_0.6446_0.1863_0.221.png
                gene_name: DGUOK
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 94 percent done.
DHCR24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
Cons ci ratio: 3.383810e-03	ci left: 9.908300e-01	ci right 9.942737e-01	k: 9927	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
DHCR24   10000 perm   2 sec   (6230 perm/sec)   p_kst 7.000000e-04   p_cons 9.927000e-01   p_joint 7.000000e-04

Joint ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
Cons ci ratio: 2.401146e-03	ci left: 9.913128e-01	ci right 9.937407e-01	k: 19852	n:20000
KS ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
DHCR24   20000 perm   4 sec   (5499 perm/sec)   p_kst 1.000000e-03   p_cons 9.926000e-01   p_joint 1.000000e-03

Joint ci ratio: 6.117725e-01	ci left: 9.527184e-04	ci right 1.815184e-03	k: 40	n:30000
Cons ci ratio: 1.904594e-03	ci left: 9.919906e-01	ci right 9.939121e-01	k: 29790	n:30000
KS ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
DHCR24   30000 perm   6 sec   (5188 perm/sec)   p_kst 1.033333e-03   p_cons 9.930000e-01   p_joint 1.333333e-03

Joint ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
Cons ci ratio: 1.642559e-03	ci left: 9.921865e-01	ci right 9.938407e-01	k: 39722	n:40000
KS ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
DHCR24   40000 perm   8 sec   (5028 perm/sec)   p_kst 1.250000e-03   p_cons 9.930500e-01   p_joint 1.250000e-03

Joint ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
Cons ci ratio: 1.505325e-03	ci left: 9.919145e-01	ci right 9.934274e-01	k: 49635	n:50000
KS ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
DHCR24   50000 perm   10 sec   (4898 perm/sec)   p_kst 1.180000e-03   p_cons 9.927000e-01   p_joint 1.720000e-03

Joint ci ratio: 3.768594e-01	ci left: 1.461708e-03	ci right 2.154575e-03	k: 107	n:60000
Cons ci ratio: 1.365960e-03	ci left: 9.920733e-01	ci right 9.934450e-01	k: 59567	n:60000
KS ci ratio: 4.523559e-01	ci left: 9.685522e-04	ci right 1.548093e-03	k: 74	n:60000
DHCR24   60000 perm   13 sec   (4784 perm/sec)   p_kst 1.233333e-03   p_cons 9.927833e-01   p_joint 1.783333e-03

Joint ci ratio: 3.502998e-01	ci left: 1.473592e-03	ci right 2.111702e-03	k: 124	n:70000
Cons ci ratio: 1.181025e-03	ci left: 9.930858e-01	ci right 9.942727e-01	k: 69559	n:70000
KS ci ratio: 4.224417e-01	ci left: 9.700399e-04	ci right 1.501267e-03	k: 85	n:70000
DHCR24   70000 perm   15 sec   (4686 perm/sec)   p_kst 1.214286e-03   p_cons 9.937000e-01   p_joint 1.771429e-03

Joint ci ratio: 3.310084e-01	ci left: 1.460863e-03	ci right 2.051212e-03	k: 139	n:80000
Cons ci ratio: 1.113366e-03	ci left: 9.930229e-01	ci right 9.941409e-01	k: 79488	n:80000
KS ci ratio: 4.040770e-01	ci left: 9.383869e-04	ci right 1.423955e-03	k: 93	n:80000
DHCR24   80000 perm   17 sec   (4593 perm/sec)   p_kst 1.162500e-03   p_cons 9.936000e-01   p_joint 1.737500e-03

Joint ci ratio: 3.135773e-01	ci left: 1.461951e-03	ci right 2.015403e-03	k: 155	n:90000
Cons ci ratio: 1.053236e-03	ci left: 9.930110e-01	ci right 9.940679e-01	k: 89420	n:90000
KS ci ratio: 3.805177e-01	ci left: 9.543138e-04	ci right 1.412148e-03	k: 105	n:90000
DHCR24   90000 perm   20 sec   (4498 perm/sec)   p_kst 1.166667e-03   p_cons 9.935556e-01   p_joint 1.722222e-03

Joint ci ratio: 2.960633e-01	ci left: 1.491239e-03	ci right 2.018335e-03	k: 174	n:100000
Cons ci ratio: 9.956360e-04	ci left: 9.930862e-01	ci right 9.940849e-01	k: 99360	n:100000
KS ci ratio: 3.621903e-01	ci left: 9.586222e-04	ci right 1.391149e-03	k: 116	n:100000
DHCR24   100000 perm   23 sec   (4409 perm/sec)   p_kst 1.160000e-03   p_cons 9.936000e-01   p_joint 1.740000e-03

Joint ci ratio: 2.776287e-01	ci left: 1.558180e-03	ci right 2.068661e-03	k: 198	n:110000
Cons ci ratio: 9.532930e-04	ci left: 9.930544e-01	ci right 9.940102e-01	k: 109290	n:110000
KS ci ratio: 3.371713e-01	ci left: 1.020762e-03	ci right 1.442607e-03	k: 134	n:110000
DHCR24   110000 perm   25 sec   (4344 perm/sec)   p_kst 1.218182e-03   p_cons 9.935455e-01   p_joint 1.800000e-03

Joint ci ratio: 2.683544e-01	ci left: 1.537013e-03	ci right 2.020908e-03	k: 212	n:120000
Cons ci ratio: 9.022073e-04	ci left: 9.932274e-01	ci right 9.941318e-01	k: 119243	n:120000
KS ci ratio: 3.253402e-01	ci left: 1.012103e-03	ci right 1.412629e-03	k: 144	n:120000
DHCR24   120000 perm   28 sec   (4277 perm/sec)   p_kst 1.200000e-03   p_cons 9.936917e-01   p_joint 1.766667e-03

Joint ci ratio: 2.560267e-01	ci left: 1.569712e-03	ci right 2.037575e-03	k: 233	n:130000
Cons ci ratio: 8.677874e-04	ci left: 9.932310e-01	ci right 9.941006e-01	k: 129178	n:130000
KS ci ratio: 3.106849e-01	ci left: 1.033352e-03	ci right 1.420218e-03	k: 158	n:130000
DHCR24   130000 perm   31 sec   (4210 perm/sec)   p_kst 1.215385e-03   p_cons 9.936769e-01   p_joint 1.792308e-03

Joint ci ratio: 2.560433e-01	ci left: 1.457578e-03	ci right 1.892051e-03	k: 233	n:140000
Cons ci ratio: 8.346502e-04	ci left: 9.932716e-01	ci right 9.941078e-01	k: 139118	n:140000
KS ci ratio: 2.969886e-01	ci left: 1.058522e-03	ci right 1.434054e-03	k: 173	n:140000
DHCR24   140000 perm   34 sec   (4149 perm/sec)   p_kst 1.235714e-03   p_cons 9.937000e-01   p_joint 1.664286e-03

Joint ci ratio: 2.348872e-01	ci left: 1.635747e-03	ci right 2.077198e-03	k: 277	n:150000
Cons ci ratio: 8.058901e-04	ci left: 9.932934e-01	ci right 9.941006e-01	k: 149056	n:150000
KS ci ratio: 2.849574e-01	ci left: 1.080661e-03	ci right 1.445723e-03	k: 188	n:150000
DHCR24   150000 perm   37 sec   (4088 perm/sec)   p_kst 1.253333e-03   p_cons 9.937067e-01   p_joint 1.846667e-03

Joint ci ratio: 2.287984e-01	ci left: 1.621817e-03	ci right 2.046561e-03	k: 292	n:160000
Cons ci ratio: 7.837985e-04	ci left: 9.932486e-01	ci right 9.940334e-01	k: 158984	n:160000
KS ci ratio: 2.784090e-01	ci left: 1.065395e-03	ci right 1.415580e-03	k: 197	n:160000
DHCR24   160000 perm   40 sec   (4024 perm/sec)   p_kst 1.231250e-03   p_cons 9.936500e-01   p_joint 1.825000e-03

Joint ci ratio: 2.288107e-01	ci left: 1.526407e-03	ci right 1.926187e-03	k: 292	n:170000
Cons ci ratio: 7.562918e-04	ci left: 9.933306e-01	ci right 9.940877e-01	k: 168932	n:170000
KS ci ratio: 2.635155e-01	ci left: 1.128840e-03	ci right 1.476761e-03	k: 220	n:170000
DHCR24   170000 perm   43 sec   (3965 perm/sec)   p_kst 1.294118e-03   p_cons 9.937176e-01   p_joint 1.717647e-03

Joint ci ratio: 2.242677e-01	ci left: 1.504488e-03	ci right 1.889623e-03	k: 304	n:180000
Cons ci ratio: 7.337146e-04	ci left: 9.933636e-01	ci right 9.940981e-01	k: 178873	n:180000
KS ci ratio: 2.571940e-01	ci left: 1.123250e-03	ci right 1.459809e-03	k: 231	n:180000
DHCR24   180000 perm   46 sec   (3908 perm/sec)   p_kst 1.283333e-03   p_cons 9.937389e-01   p_joint 1.688889e-03

Joint ci ratio: 2.189495e-01	ci left: 1.499870e-03	ci right 1.873492e-03	k: 319	n:190000
Cons ci ratio: 7.130385e-04	ci left: 9.933935e-01	ci right 9.941071e-01	k: 188814	n:190000
KS ci ratio: 2.507904e-01	ci left: 1.123269e-03	ci right 1.450147e-03	k: 243	n:190000
DHCR24   190000 perm   49 sec   (3852 perm/sec)   p_kst 1.278947e-03   p_cons 9.937579e-01   p_joint 1.678947e-03

Joint ci ratio: 2.130391e-01	ci left: 1.510009e-03	ci right 1.874677e-03	k: 337	n:200000
Cons ci ratio: 6.970876e-04	ci left: 9.933640e-01	ci right 9.940615e-01	k: 198744	n:200000
KS ci ratio: 2.434186e-01	ci left: 1.137463e-03	ci right 1.457272e-03	k: 258	n:200000
DHCR24   200000 perm   53 sec   (3799 perm/sec)   p_kst 1.290000e-03   p_cons 9.937200e-01   p_joint 1.685000e-03

Joint ci ratio: 2.087610e-01	ci left: 1.501249e-03	ci right 1.855591e-03	k: 351	n:210000
Cons ci ratio: 6.790293e-04	ci left: 9.933963e-01	ci right 9.940757e-01	k: 208686	n:210000
KS ci ratio: 2.392987e-01	ci left: 1.123563e-03	ci right 1.433324e-03	k: 267	n:210000
DHCR24   210000 perm   56 sec   (3745 perm/sec)   p_kst 1.271429e-03   p_cons 9.937429e-01   p_joint 1.671429e-03

Joint ci ratio: 2.041727e-01	ci left: 1.501978e-03	ci right 1.847728e-03	k: 367	n:220000
Cons ci ratio: 6.661697e-04	ci left: 9.933512e-01	ci right 9.940175e-01	k: 218612	n:220000
KS ci ratio: 2.341152e-01	ci left: 1.123803e-03	ci right 1.425947e-03	k: 279	n:220000
DHCR24   220000 perm   60 sec   (3694 perm/sec)   p_kst 1.268182e-03   p_cons 9.936909e-01   p_joint 1.668182e-03

Joint ci ratio: 2.006608e-01	ci left: 1.490331e-03	ci right 1.826776e-03	k: 380	n:230000
Cons ci ratio: 6.496878e-04	ci left: 9.933949e-01	ci right 9.940447e-01	k: 228557	n:230000
KS ci ratio: 2.296486e-01	ci left: 1.119990e-03	ci right 1.414549e-03	k: 290	n:230000
DHCR24   230000 perm   63 sec   (3643 perm/sec)   p_kst 1.260870e-03   p_cons 9.937261e-01   p_joint 1.652174e-03

Joint ci ratio: 1.960819e-01	ci left: 1.499510e-03	ci right 1.829379e-03	k: 398	n:240000
Cons ci ratio: 6.356302e-04	ci left: 9.934095e-01	ci right 9.940452e-01	k: 238496	n:240000
KS ci ratio: 2.246845e-01	ci left: 1.124408e-03	ci right 1.412853e-03	k: 303	n:240000
DHCR24   240000 perm   67 sec   (3595 perm/sec)   p_kst 1.262500e-03   p_cons 9.937333e-01   p_joint 1.658333e-03

Joint ci ratio: 1.939101e-01	ci left: 1.473770e-03	ci right 1.793962e-03	k: 407	n:250000
Cons ci ratio: 6.216461e-04	ci left: 9.934394e-01	ci right 9.940610e-01	k: 248439	n:250000
KS ci ratio: 2.217873e-01	ci left: 1.109642e-03	ci right 1.390127e-03	k: 311	n:250000
DHCR24   250000 perm   70 sec   (3548 perm/sec)   p_kst 1.244000e-03   p_cons 9.937560e-01   p_joint 1.628000e-03

Joint ci ratio: 1.922712e-01	ci left: 1.442706e-03	ci right 1.753190e-03	k: 414	n:260000
Cons ci ratio: 6.106157e-04	ci left: 9.934238e-01	ci right 9.940343e-01	k: 258371	n:260000
KS ci ratio: 2.196878e-01	ci left: 1.088763e-03	ci right 1.361013e-03	k: 317	n:260000
DHCR24   260000 perm   74 sec   (3502 perm/sec)   p_kst 1.219231e-03   p_cons 9.937346e-01   p_joint 1.592308e-03

Joint ci ratio: 1.884498e-01	ci left: 1.449235e-03	ci right 1.754216e-03	k: 431	n:270000
Cons ci ratio: 5.974728e-04	ci left: 9.934664e-01	ci right 9.940637e-01	k: 268318	n:270000
KS ci ratio: 2.150052e-01	ci left: 1.097468e-03	ci right 1.365274e-03	k: 331	n:270000
DHCR24   270000 perm   78 sec   (3457 perm/sec)   p_kst 1.225926e-03   p_cons 9.937704e-01   p_joint 1.596296e-03

Joint ci ratio: 1.830194e-01	ci left: 1.486020e-03	ci right 1.788731e-03	k: 457	n:280000
Cons ci ratio: 5.866504e-04	ci left: 9.934731e-01	ci right 9.940595e-01	k: 278256	n:280000
KS ci ratio: 2.094014e-01	ci left: 1.119144e-03	ci right 1.384209e-03	k: 349	n:280000
DHCR24   280000 perm   82 sec   (3414 perm/sec)   p_kst 1.246429e-03   p_cons 9.937714e-01   p_joint 1.632143e-03

Joint ci ratio: 1.791485e-01	ci left: 1.500618e-03	ci right 1.799138e-03	k: 477	n:290000
Cons ci ratio: 5.751103e-04	ci left: 9.935076e-01	ci right 9.940825e-01	k: 288202	n:290000
KS ci ratio: 2.044925e-01	ci left: 1.136137e-03	ci right 1.398131e-03	k: 366	n:290000
DHCR24   290000 perm   86 sec   (3373 perm/sec)   p_kst 1.262069e-03   p_cons 9.938000e-01   p_joint 1.644828e-03

Joint ci ratio: 1.449088e-01	ci left: 2.256973e-03	ci right 2.612747e-03	k: 729	n:300000
Cons ci ratio: 5.646740e-04	ci left: 9.935297e-01	ci right 9.940941e-01	k: 298145	n:300000
KS ci ratio: 2.004366e-01	ci left: 1.145732e-03	ci right 1.404057e-03	k: 381	n:300000
DHCR24   300000 perm   90 sec   (3333 perm/sec)   p_kst 1.270000e-03   p_cons 9.938167e-01   p_joint 2.430000e-03

Joint ci ratio: 1.045294e-01	ci left: 4.279986e-03	ci right 4.755156e-03	k: 1399	n:310000
Cons ci ratio: 5.550739e-04	ci left: 9.935438e-01	ci right 9.940985e-01	k: 308086	n:310000
KS ci ratio: 1.946588e-01	ci left: 1.179299e-03	ci right 1.436620e-03	k: 404	n:310000
DHCR24   310000 perm   94 sec   (3292 perm/sec)   p_kst 1.303226e-03   p_cons 9.938258e-01   p_joint 4.512903e-03

Joint ci ratio: 1.386803e-01	ci left: 2.317868e-03	ci right 2.666240e-03	k: 796	n:320000
Cons ci ratio: 5.466416e-04	ci left: 9.935411e-01	ci right 9.940874e-01	k: 318022	n:320000
KS ci ratio: 1.906965e-01	ci left: 1.193010e-03	ci right 1.447409e-03	k: 421	n:320000
DHCR24   320000 perm   98 sec   (3253 perm/sec)   p_kst 1.315625e-03   p_cons 9.938187e-01   p_joint 2.487500e-03

Joint ci ratio: 1.369734e-01	ci left: 2.306144e-03	ci right 2.648140e-03	k: 816	n:330000
Cons ci ratio: 5.372537e-04	ci left: 9.935696e-01	ci right 9.941065e-01	k: 327968	n:330000
KS ci ratio: 1.886961e-01	ci left: 1.182835e-03	ci right 1.432115e-03	k: 430	n:330000
DHCR24   330000 perm   103 sec   (3215 perm/sec)   p_kst 1.303030e-03   p_cons 9.938424e-01   p_joint 2.472727e-03

Joint ci ratio: 1.346842e-01	ci left: 2.317872e-03	ci right 2.655403e-03	k: 844	n:340000
Cons ci ratio: 5.302332e-04	ci left: 9.935515e-01	ci right 9.940813e-01	k: 337899	n:340000
KS ci ratio: 1.850803e-01	ci left: 1.195707e-03	ci right 1.442330e-03	k: 447	n:340000
DHCR24   340000 perm   107 sec   (3177 perm/sec)   p_kst 1.314706e-03   p_cons 9.938206e-01   p_joint 2.482353e-03

Joint ci ratio: 9.783705e-02	ci left: 4.342264e-03	ci right 4.791714e-03	k: 1597	n:350000
Cons ci ratio: 5.211651e-04	ci left: 9.935898e-01	ci right 9.941105e-01	k: 347849	n:350000
KS ci ratio: 1.822542e-01	ci left: 1.199705e-03	ci right 1.442957e-03	k: 461	n:350000
DHCR24   350000 perm   111 sec   (3139 perm/sec)   p_kst 1.317143e-03   p_cons 9.938543e-01   p_joint 4.562857e-03

Joint ci ratio: 1.312360e-01	ci left: 2.309943e-03	ci right 2.637036e-03	k: 889	n:360000
Cons ci ratio: 5.144028e-04	ci left: 9.935807e-01	ci right 9.940946e-01	k: 357783	n:360000
KS ci ratio: 1.810840e-01	ci left: 1.182288e-03	ci right 1.420300e-03	k: 467	n:360000
DHCR24   360000 perm   116 sec   (3103 perm/sec)   p_kst 1.297222e-03   p_cons 9.938417e-01   p_joint 2.469444e-03

Joint ci ratio: 1.289372e-01	ci left: 2.331186e-03	ci right 2.655062e-03	k: 921	n:370000
Cons ci ratio: 5.081188e-04	ci left: 9.935666e-01	ci right 9.940742e-01	k: 367715	n:370000
KS ci ratio: 1.786202e-01	ci left: 1.183888e-03	ci right 1.418629e-03	k: 480	n:370000
DHCR24   370000 perm   121 sec   (3066 perm/sec)   p_kst 1.297297e-03   p_cons 9.938243e-01   p_joint 2.489189e-03

Joint ci ratio: 1.464615e-01	ci left: 1.743752e-03	ci right 2.021827e-03	k: 714	n:380000
Cons ci ratio: 5.014118e-04	ci left: 9.935695e-01	ci right 9.940703e-01	k: 377653	n:380000
KS ci ratio: 1.758981e-01	ci left: 1.190456e-03	ci right 1.422519e-03	k: 495	n:380000
DHCR24   380000 perm   126 sec   (3015 perm/sec)   p_kst 1.302632e-03   p_cons 9.938237e-01   p_joint 1.878947e-03

Joint ci ratio: 1.449497e-01	ci left: 1.736099e-03	ci right 2.009848e-03	k: 729	n:390000
Cons ci ratio: 4.951702e-04	ci left: 9.935670e-01	ci right 9.940616e-01	k: 387589	n:390000
KS ci ratio: 1.743245e-01	ci left: 1.181996e-03	ci right 1.410132e-03	k: 504	n:390000
DHCR24   390000 perm   132 sec   (2960 perm/sec)   p_kst 1.292308e-03   p_cons 9.938179e-01   p_joint 1.869231e-03

Joint ci ratio: 1.234969e-01	ci left: 2.357300e-03	ci right 2.669976e-03	k: 1004	n:400000
Cons ci ratio: 4.894537e-04	ci left: 9.935570e-01	ci right 9.940458e-01	k: 397522	n:400000
KS ci ratio: 1.721231e-01	ci left: 1.183537e-03	ci right 1.408787e-03	k: 517	n:400000
DHCR24   400000 perm   137 sec   (2929 perm/sec)   p_kst 1.292500e-03   p_cons 9.938050e-01   p_joint 2.510000e-03

Joint ci ratio: 1.215168e-01	ci left: 2.377828e-03	ci right 2.687806e-03	k: 1037	n:410000
Cons ci ratio: 4.851704e-04	ci left: 9.935152e-01	ci right 9.939997e-01	k: 407442	n:410000
KS ci ratio: 1.692073e-01	ci left: 1.196698e-03	ci right 1.420201e-03	k: 535	n:410000
DHCR24   410000 perm   142 sec   (2897 perm/sec)   p_kst 1.304878e-03   p_cons 9.937610e-01   p_joint 2.529268e-03

Joint ci ratio: 1.199099e-01	ci left: 2.385867e-03	ci right 2.692488e-03	k: 1065	n:420000
Cons ci ratio: 4.780318e-04	ci left: 9.935531e-01	ci right 9.940305e-01	k: 417394	n:420000
KS ci ratio: 1.665854e-01	ci left: 1.206982e-03	ci right 1.428561e-03	k: 552	n:420000
DHCR24   420000 perm   147 sec   (2854 perm/sec)   p_kst 1.314286e-03   p_cons 9.937952e-01   p_joint 2.535714e-03

Joint ci ratio: 1.185282e-01	ci left: 2.386788e-03	ci right 2.689745e-03	k: 1090	n:430000
Cons ci ratio: 4.727904e-04	ci left: 9.935466e-01	ci right 9.940188e-01	k: 427328	n:430000
KS ci ratio: 1.645158e-01	ci left: 1.210122e-03	ci right 1.429245e-03	k: 566	n:430000
DHCR24   430000 perm   153 sec   (2817 perm/sec)   p_kst 1.316279e-03   p_cons 9.937860e-01   p_joint 2.534884e-03

Joint ci ratio: 1.349626e-01	ci left: 1.784461e-03	ci right 2.044895e-03	k: 841	n:440000
Cons ci ratio: 4.673729e-04	ci left: 9.935498e-01	ci right 9.940164e-01	k: 437266	n:440000
KS ci ratio: 1.623815e-01	ci left: 1.215316e-03	ci right 1.432246e-03	k: 581	n:440000
DHCR24   440000 perm   159 sec   (2768 perm/sec)   p_kst 1.320455e-03   p_cons 9.937864e-01   p_joint 1.911364e-03

Joint ci ratio: 1.330786e-01	ci left: 1.796353e-03	ci right 2.054572e-03	k: 865	n:450000
Cons ci ratio: 4.615553e-04	ci left: 9.935686e-01	ci right 9.940295e-01	k: 447211	n:450000
KS ci ratio: 1.601940e-01	ci left: 1.222429e-03	ci right 1.437407e-03	k: 597	n:450000
DHCR24   450000 perm   166 sec   (2717 perm/sec)   p_kst 1.326667e-03   p_cons 9.938022e-01   p_joint 1.922222e-03

Joint ci ratio: 1.306842e-01	ci left: 1.824573e-03	ci right 2.081765e-03	k: 897	n:460000
Cons ci ratio: 4.563498e-04	ci left: 9.935756e-01	ci right 9.940312e-01	k: 457151	n:460000
KS ci ratio: 1.571978e-01	ci left: 1.243870e-03	ci right 1.458142e-03	k: 620	n:460000
DHCR24   460000 perm   172 sec   (2680 perm/sec)   p_kst 1.347826e-03   p_cons 9.938065e-01   p_joint 1.950000e-03

Joint ci ratio: 1.291822e-01	ci left: 1.828981e-03	ci right 2.083604e-03	k: 918	n:470000
Cons ci ratio: 4.520180e-04	ci left: 9.935628e-01	ci right 9.940141e-01	k: 467082	n:470000
KS ci ratio: 1.554552e-01	ci left: 1.246027e-03	ci right 1.458069e-03	k: 634	n:470000
DHCR24   470000 perm   177 sec   (2651 perm/sec)   p_kst 1.348936e-03   p_cons 9.937915e-01   p_joint 1.953191e-03

Joint ci ratio: 1.271898e-01	ci left: 1.849358e-03	ci right 2.102547e-03	k: 947	n:480000
Cons ci ratio: 4.468992e-04	ci left: 9.935760e-01	ci right 9.940222e-01	k: 477025	n:480000
KS ci ratio: 1.534146e-01	ci left: 1.254117e-03	ci right 1.464476e-03	k: 651	n:480000
DHCR24   480000 perm   183 sec   (2626 perm/sec)   p_kst 1.356250e-03   p_cons 9.938021e-01   p_joint 1.972917e-03

Joint ci ratio: 8.143885e-02	ci left: 4.514409e-03	ci right 4.899647e-03	k: 2305	n:490000
Cons ci ratio: 4.423155e-04	ci left: 9.935783e-01	ci right 9.940199e-01	k: 486963	n:490000
KS ci ratio: 1.512261e-01	ci left: 1.265821e-03	ci right 1.474840e-03	k: 670	n:490000
DHCR24   490000 perm   188 sec   (2602 perm/sec)   p_kst 1.367347e-03   p_cons 9.938020e-01   p_joint 4.704082e-03

Joint ci ratio: 1.080394e-01	ci left: 2.484089e-03	ci right 2.769722e-03	k: 1312	n:500000
Cons ci ratio: 4.375857e-04	ci left: 9.935887e-01	ci right 9.940255e-01	k: 496905	n:500000
KS ci ratio: 1.498920e-01	ci left: 1.263600e-03	ci right 1.470247e-03	k: 682	n:500000
DHCR24   500000 perm   194 sec   (2580 perm/sec)   p_kst 1.364000e-03   p_cons 9.938100e-01   p_joint 2.624000e-03

Joint ci ratio: 7.986153e-02	ci left: 4.514127e-03	ci right 4.891533e-03	k: 2397	n:510000
Cons ci ratio: 4.320357e-04	ci left: 9.936266e-01	ci right 9.940579e-01	k: 506861	n:510000
KS ci ratio: 1.483789e-01	ci left: 1.265250e-03	ci right 1.469893e-03	k: 696	n:510000
DHCR24   510000 perm   199 sec   (2557 perm/sec)   p_kst 1.364706e-03   p_cons 9.938451e-01   p_joint 4.700000e-03

Joint ci ratio: 7.917160e-02	ci left: 4.506479e-03	ci right 4.879841e-03	k: 2439	n:520000
Cons ci ratio: 4.280249e-04	ci left: 9.936240e-01	ci right 9.940512e-01	k: 516797	n:520000
KS ci ratio: 1.471182e-01	ci left: 1.263142e-03	ci right 1.465556e-03	k: 708	n:520000
DHCR24   520000 perm   205 sec   (2535 perm/sec)   p_kst 1.361538e-03   p_cons 9.938404e-01   p_joint 4.690385e-03

Joint ci ratio: 1.050424e-01	ci left: 2.483056e-03	ci right 2.760161e-03	k: 1388	n:530000
Cons ci ratio: 4.246454e-04	ci left: 9.936061e-01	ci right 9.940300e-01	k: 526725	n:530000
KS ci ratio: 1.458890e-01	ci left: 1.261121e-03	ci right 1.461375e-03	k: 720	n:530000
DHCR24   530000 perm   211 sec   (2512 perm/sec)   p_kst 1.358491e-03   p_cons 9.938208e-01   p_joint 2.618868e-03

Joint ci ratio: 7.765847e-02	ci left: 4.513865e-03	ci right 4.880369e-03	k: 2535	n:540000
Cons ci ratio: 4.207706e-04	ci left: 9.936059e-01	ci right 9.940258e-01	k: 536662	n:540000
KS ci ratio: 1.445913e-01	ci left: 1.260966e-03	ci right 1.459261e-03	k: 733	n:540000
DHCR24   540000 perm   217 sec   (2490 perm/sec)   p_kst 1.357407e-03   p_cons 9.938185e-01   p_joint 4.694444e-03

Joint ci ratio: 7.700863e-02	ci left: 4.508464e-03	ci right 4.871329e-03	k: 2578	n:550000
Cons ci ratio: 4.167531e-04	ci left: 9.936130e-01	ci right 9.940290e-01	k: 546603	n:550000
KS ci ratio: 1.433277e-01	ci left: 1.260824e-03	ci right 1.457216e-03	k: 746	n:550000
DHCR24   550000 perm   223 sec   (2469 perm/sec)   p_kst 1.356364e-03   p_cons 9.938236e-01   p_joint 4.687273e-03

Joint ci ratio: 7.641876e-02	ci left: 4.498014e-03	ci right 4.857140e-03	k: 2618	n:560000
Cons ci ratio: 4.134486e-04	ci left: 9.936018e-01	ci right 9.940145e-01	k: 556534	n:560000
KS ci ratio: 1.420967e-01	ci left: 1.260695e-03	ci right 1.455237e-03	k: 759	n:560000
DHCR24   560000 perm   229 sec   (2448 perm/sec)   p_kst 1.355357e-03   p_cons 9.938107e-01   p_joint 4.675000e-03

Joint ci ratio: 7.561402e-02	ci left: 4.515481e-03	ci right 4.872039e-03	k: 2674	n:570000
Cons ci ratio: 4.091094e-04	ci left: 9.936249e-01	ci right 9.940332e-01	k: 566484	n:570000
KS ci ratio: 1.408968e-01	ci left: 1.260577e-03	ci right 1.453320e-03	k: 772	n:570000
DHCR24   570000 perm   235 sec   (2428 perm/sec)   p_kst 1.354386e-03   p_cons 9.938316e-01   p_joint 4.691228e-03

Joint ci ratio: 7.490310e-02	ci left: 4.523904e-03	ci right 4.877623e-03	k: 2725	n:580000
Cons ci ratio: 4.055843e-04	ci left: 9.936262e-01	ci right 9.940309e-01	k: 576422	n:580000
KS ci ratio: 1.397269e-01	ci left: 1.260470e-03	ci right 1.451463e-03	k: 785	n:580000
DHCR24   580000 perm   241 sec   (2408 perm/sec)   p_kst 1.353448e-03   p_cons 9.938310e-01   p_joint 4.698276e-03

Joint ci ratio: 7.437348e-02	ci left: 4.512095e-03	ci right 4.862287e-03	k: 2764	n:590000
Cons ci ratio: 4.017040e-04	ci left: 9.936412e-01	ci right 9.940421e-01	k: 586368	n:590000
KS ci ratio: 1.391096e-01	ci left: 1.250556e-03	ci right 1.439141e-03	k: 792	n:590000
DHCR24   590000 perm   247 sec   (2387 perm/sec)   p_kst 1.342373e-03   p_cons 9.938441e-01   p_joint 4.684746e-03

Joint ci ratio: 7.364413e-02	ci left: 4.526865e-03	ci right 4.874611e-03	k: 2819	n:600000
Cons ci ratio: 3.979313e-04	ci left: 9.936557e-01	ci right 9.940528e-01	k: 596314	n:600000
KS ci ratio: 1.378976e-01	ci left: 1.252239e-03	ci right 1.439296e-03	k: 806	n:600000
DHCR24   600000 perm   254 sec   (2367 perm/sec)   p_kst 1.343333e-03   p_cons 9.938567e-01   p_joint 4.698333e-03

Joint ci ratio: 7.306361e-02	ci left: 4.525071e-03	ci right 4.869823e-03	k: 2864	n:610000
Cons ci ratio: 3.948970e-04	ci left: 9.936498e-01	ci right 9.940439e-01	k: 606248	n:610000
KS ci ratio: 1.368838e-01	ci left: 1.250706e-03	ci right 1.436049e-03	k: 818	n:610000
DHCR24   610000 perm   260 sec   (2347 perm/sec)   p_kst 1.340984e-03   p_cons 9.938492e-01   p_joint 4.695082e-03

Joint ci ratio: 9.705577e-02	ci left: 2.496798e-03	ci right 2.753046e-03	k: 1626	n:620000
Cons ci ratio: 3.913105e-04	ci left: 9.936637e-01	ci right 9.940542e-01	k: 616194	n:620000
KS ci ratio: 1.355657e-01	ci left: 1.255460e-03	ci right 1.439572e-03	k: 834	n:620000
DHCR24   620000 perm   266 sec   (2329 perm/sec)   p_kst 1.345161e-03   p_cons 9.938613e-01   p_joint 2.622581e-03

Joint ci ratio: 9.646516e-02	ci left: 2.488143e-03	ci right 2.741862e-03	k: 1646	n:630000
Cons ci ratio: 3.884245e-04	ci left: 9.936579e-01	ci right 9.940455e-01	k: 626128	n:630000
KS ci ratio: 1.349215e-01	ci left: 1.247801e-03	ci right 1.429850e-03	k: 842	n:630000
DHCR24   630000 perm   273 sec   (2311 perm/sec)   p_kst 1.336508e-03   p_cons 9.938540e-01   p_joint 2.612698e-03

Joint ci ratio: 7.121055e-02	ci left: 4.544642e-03	ci right 4.881740e-03	k: 3015	n:640000
Cons ci ratio: 3.858962e-04	ci left: 9.936427e-01	ci right 9.940278e-01	k: 636056	n:640000
KS ci ratio: 1.337368e-01	ci left: 1.250954e-03	ci right 1.431733e-03	k: 857	n:640000
DHCR24   640000 perm   279 sec   (2293 perm/sec)   p_kst 1.339062e-03   p_cons 9.938375e-01   p_joint 4.710937e-03

Joint ci ratio: 9.528727e-02	ci left: 2.473149e-03	ci right 2.722087e-03	k: 1687	n:650000
Cons ci ratio: 3.827893e-04	ci left: 9.936484e-01	ci right 9.940303e-01	k: 645997	n:650000
KS ci ratio: 1.331952e-01	ci left: 1.242118e-03	ci right 1.420836e-03	k: 864	n:650000
DHCR24   650000 perm   286 sec   (2275 perm/sec)   p_kst 1.329231e-03   p_cons 9.938415e-01   p_joint 2.595385e-03

Joint ci ratio: 6.996808e-02	ci left: 4.567676e-03	ci right 4.900331e-03	k: 3123	n:660000
Cons ci ratio: 3.798972e-04	ci left: 9.936492e-01	ci right 9.940282e-01	k: 655935	n:660000
KS ci ratio: 1.317554e-01	ci left: 1.251132e-03	ci right 1.429049e-03	k: 883	n:660000
DHCR24   660000 perm   292 sec   (2258 perm/sec)   p_kst 1.337879e-03   p_cons 9.938409e-01   p_joint 4.731818e-03

Joint ci ratio: 6.946965e-02	ci left: 4.565494e-03	ci right 4.895527e-03	k: 3168	n:670000
Cons ci ratio: 3.772993e-04	ci left: 9.936425e-01	ci right 9.940189e-01	k: 665868	n:670000
KS ci ratio: 1.309435e-01	ci left: 1.248337e-03	ci right 1.424677e-03	k: 894	n:670000
DHCR24   670000 perm   299 sec   (2240 perm/sec)   p_kst 1.334328e-03   p_cons 9.938328e-01   p_joint 4.728358e-03

Joint ci ratio: 9.284347e-02	ci left: 2.493280e-03	ci right 2.737458e-03	k: 1777	n:680000
Cons ci ratio: 3.744839e-04	ci left: 9.936449e-01	ci right 9.940185e-01	k: 675807	n:680000
KS ci ratio: 1.296458e-01	ci left: 1.255587e-03	ci right 1.431058e-03	k: 912	n:680000
DHCR24   680000 perm   306 sec   (2222 perm/sec)   p_kst 1.341176e-03   p_cons 9.938338e-01   p_joint 2.613235e-03

Joint ci ratio: 9.204420e-02	ci left: 2.501035e-03	ci right 2.743750e-03	k: 1808	n:690000
Cons ci ratio: 3.713789e-04	ci left: 9.936590e-01	ci right 9.940295e-01	k: 685754	n:690000
KS ci ratio: 1.288721e-01	ci left: 1.252816e-03	ci right 1.426776e-03	k: 923	n:690000
DHCR24   690000 perm   313 sec   (2204 perm/sec)   p_kst 1.337681e-03   p_cons 9.938464e-01   p_joint 2.620290e-03

Joint ci ratio: 9.161534e-02	ci left: 2.489033e-03	ci right 2.729398e-03	k: 1825	n:700000
Cons ci ratio: 3.686068e-04	ci left: 9.936641e-01	ci right 9.940318e-01	k: 695695	n:700000
KS ci ratio: 1.283183e-01	ci left: 1.245980e-03	ci right 1.418190e-03	k: 931	n:700000
DHCR24   700000 perm   320 sec   (2186 perm/sec)   p_kst 1.330000e-03   p_cons 9.938500e-01   p_joint 2.607143e-03

Joint ci ratio: 9.109335e-02	ci left: 2.482878e-03	ci right 2.721209e-03	k: 1846	n:710000
Cons ci ratio: 3.661487e-04	ci left: 9.936604e-01	ci right 9.940257e-01	k: 705630	n:710000
KS ci ratio: 1.277035e-01	ci left: 1.240701e-03	ci right 1.411297e-03	k: 940	n:710000
DHCR24   710000 perm   327 sec   (2168 perm/sec)   p_kst 1.323944e-03   p_cons 9.938451e-01   p_joint 2.600000e-03

Joint ci ratio: 9.067758e-02	ci left: 2.471467e-03	ci right 2.707563e-03	k: 1863	n:720000
Cons ci ratio: 3.636152e-04	ci left: 9.936611e-01	ci right 9.940238e-01	k: 715568	n:720000
KS ci ratio: 1.272317e-01	ci left: 1.232881e-03	ci right 1.401728e-03	k: 947	n:720000
DHCR24   720000 perm   335 sec   (2151 perm/sec)   p_kst 1.315278e-03   p_cons 9.938444e-01   p_joint 2.587500e-03

Joint ci ratio: 9.002783e-02	ci left: 2.473762e-03	ci right 2.708295e-03	k: 1890	n:730000
Cons ci ratio: 3.617797e-04	ci left: 9.936395e-01	ci right 9.940004e-01	k: 725490	n:730000
KS ci ratio: 1.264342e-01	ci left: 1.231908e-03	ci right 1.399486e-03	k: 959	n:730000
DHCR24   730000 perm   342 sec   (2134 perm/sec)   p_kst 1.313699e-03   p_cons 9.938219e-01   p_joint 2.589041e-03

Joint ci ratio: 8.936849e-02	ci left: 2.477322e-03	ci right 2.710383e-03	k: 1918	n:740000
Cons ci ratio: 3.592164e-04	ci left: 9.936446e-01	ci right 9.940029e-01	k: 735431	n:740000
KS ci ratio: 1.252648e-01	ci left: 1.238820e-03	ci right 1.405664e-03	k: 977	n:740000
DHCR24   740000 perm   349 sec   (2118 perm/sec)   p_kst 1.320270e-03   p_cons 9.938257e-01   p_joint 2.591892e-03

Joint ci ratio: 6.571964e-02	ci left: 4.566131e-03	ci right 4.877713e-03	k: 3540	n:750000
Cons ci ratio: 3.569005e-04	ci left: 9.936428e-01	ci right 9.939987e-01	k: 745367	n:750000
KS ci ratio: 1.243777e-01	ci left: 1.240386e-03	ci right 1.406171e-03	k: 991	n:750000
DHCR24   750000 perm   357 sec   (2102 perm/sec)   p_kst 1.321333e-03   p_cons 9.938227e-01   p_joint 4.720000e-03

Joint ci ratio: 6.517837e-02	ci left: 4.582413e-03	ci right 4.892433e-03	k: 3599	n:760000
Cons ci ratio: 3.545908e-04	ci left: 9.936423e-01	ci right 9.939960e-01	k: 755304	n:760000
KS ci ratio: 1.233864e-01	ci left: 1.244466e-03	ci right 1.409373e-03	k: 1007	n:760000
DHCR24   760000 perm   364 sec   (2087 perm/sec)   p_kst 1.325000e-03   p_cons 9.938211e-01   p_joint 4.735526e-03

Joint ci ratio: 6.469468e-02	ci left: 4.591893e-03	ci right 4.900163e-03	k: 3653	n:770000
Cons ci ratio: 3.521391e-04	ci left: 9.936485e-01	ci right 9.939997e-01	k: 765246	n:770000
KS ci ratio: 1.225984e-01	ci left: 1.244668e-03	ci right 1.408472e-03	k: 1020	n:770000
DHCR24   770000 perm   372 sec   (2072 perm/sec)   p_kst 1.324675e-03   p_cons 9.938260e-01   p_joint 4.744156e-03

Joint ci ratio: 6.426516e-02	ci left: 4.594830e-03	ci right 4.901173e-03	k: 3702	n:780000
Cons ci ratio: 3.501393e-04	ci left: 9.936402e-01	ci right 9.939894e-01	k: 775177	n:780000
KS ci ratio: 1.218843e-01	ci left: 1.243624e-03	ci right 1.406269e-03	k: 1032	n:780000
DHCR24   780000 perm   379 sec   (2057 perm/sec)   p_kst 1.323077e-03   p_cons 9.938167e-01   p_joint 4.746154e-03

Joint ci ratio: 6.389543e-02	ci left: 4.590226e-03	ci right 4.894436e-03	k: 3745	n:790000
Cons ci ratio: 3.476350e-04	ci left: 9.936514e-01	ci right 9.939981e-01	k: 785123	n:790000
KS ci ratio: 1.214739e-01	ci left: 1.236473e-03	ci right 1.397599e-03	k: 1039	n:790000
DHCR24   790000 perm   387 sec   (2043 perm/sec)   p_kst 1.315190e-03   p_cons 9.938266e-01   p_joint 4.740506e-03

Joint ci ratio: 8.588123e-02	ci left: 2.485920e-03	ci right 2.710206e-03	k: 2077	n:800000
Cons ci ratio: 3.450419e-04	ci left: 9.936674e-01	ci right 9.940115e-01	k: 795073	n:800000
KS ci ratio: 1.209520e-01	ci left: 1.231926e-03	ci right 1.391720e-03	k: 1048	n:800000
DHCR24   800000 perm   395 sec   (2026 perm/sec)   p_kst 1.310000e-03   p_cons 9.938413e-01   p_joint 2.596250e-03

Joint ci ratio: 6.324939e-02	ci left: 4.570436e-03	ci right 4.870160e-03	k: 3822	n:810000
Cons ci ratio: 3.429884e-04	ci left: 9.936655e-01	ci right 9.940075e-01	k: 805009	n:810000
KS ci ratio: 1.202095e-01	ci left: 1.232282e-03	ci right 1.391072e-03	k: 1061	n:810000
DHCR24   810000 perm   402 sec   (2013 perm/sec)   p_kst 1.309877e-03   p_cons 9.938383e-01   p_joint 4.718519e-03

Joint ci ratio: 6.284784e-02	ci left: 4.573513e-03	ci right 4.871466e-03	k: 3871	n:820000
Cons ci ratio: 3.406316e-04	ci left: 9.936759e-01	ci right 9.940157e-01	k: 814955	n:820000
KS ci ratio: 1.197036e-01	ci left: 1.227901e-03	ci right 1.385412e-03	k: 1070	n:820000
DHCR24   820000 perm   410 sec   (1999 perm/sec)   p_kst 1.304878e-03   p_cons 9.938476e-01   p_joint 4.720732e-03

Joint ci ratio: 6.253401e-02	ci left: 4.564661e-03	ci right 4.860498e-03	k: 3910	n:830000
Cons ci ratio: 3.386888e-04	ci left: 9.936728e-01	ci right 9.940105e-01	k: 824890	n:830000
KS ci ratio: 1.192594e-01	ci left: 1.222457e-03	ci right 1.378647e-03	k: 1078	n:830000
DHCR24   830000 perm   418 sec   (1984 perm/sec)   p_kst 1.298795e-03   p_cons 9.938434e-01   p_joint 4.710843e-03

Joint ci ratio: 8.415832e-02	ci left: 2.467746e-03	ci right 2.685707e-03	k: 2163	n:840000
Cons ci ratio: 3.367461e-04	ci left: 9.936708e-01	ci right 9.940067e-01	k: 834826	n:840000
KS ci ratio: 1.187654e-01	ci left: 1.218299e-03	ci right 1.373268e-03	k: 1087	n:840000
DHCR24   840000 perm   427 sec   (1968 perm/sec)   p_kst 1.294048e-03   p_cons 9.938405e-01   p_joint 2.575000e-03

Joint ci ratio: 8.365725e-02	ci left: 2.468660e-03	ci right 2.685340e-03	k: 2189	n:850000
Cons ci ratio: 3.356393e-04	ci left: 9.936392e-01	ci right 9.939739e-01	k: 844737	n:850000
KS ci ratio: 1.181159e-01	ci left: 1.217665e-03	ci right 1.371648e-03	k: 1099	n:850000
DHCR24   850000 perm   436 sec   (1949 perm/sec)   p_kst 1.292941e-03   p_cons 9.938082e-01   p_joint 2.575294e-03

Joint ci ratio: 8.318384e-02	ci left: 2.468418e-03	ci right 2.683791e-03	k: 2214	n:860000
Cons ci ratio: 3.337790e-04	ci left: 9.936366e-01	ci right 9.939694e-01	k: 854672	n:860000
KS ci ratio: 1.173713e-01	ci left: 1.219306e-03	ci right 1.372457e-03	k: 1113	n:860000
DHCR24   860000 perm   445 sec   (1935 perm/sec)   p_kst 1.294186e-03   p_cons 9.938047e-01   p_joint 2.574419e-03

Joint ci ratio: 6.116565e-02	ci left: 4.555093e-03	ci right 4.843622e-03	k: 4087	n:870000
Cons ci ratio: 3.316704e-04	ci left: 9.936445e-01	ci right 9.939752e-01	k: 864616	n:870000
KS ci ratio: 1.166923e-01	ci left: 1.219796e-03	ci right 1.372061e-03	k: 1126	n:870000
DHCR24   870000 perm   453 sec   (1922 perm/sec)   p_kst 1.294253e-03   p_cons 9.938115e-01   p_joint 4.697701e-03

Joint ci ratio: 6.082444e-02	ci left: 4.554806e-03	ci right 4.841651e-03	k: 4133	n:880000
Cons ci ratio: 3.298446e-04	ci left: 9.936430e-01	ci right 9.939719e-01	k: 874552	n:880000
KS ci ratio: 1.159742e-01	ci left: 1.221381e-03	ci right 1.372841e-03	k: 1140	n:880000
DHCR24   880000 perm   461 sec   (1909 perm/sec)   p_kst 1.295455e-03   p_cons 9.938091e-01   p_joint 4.696591e-03

Joint ci ratio: 6.051068e-02	ci left: 4.551210e-03	ci right 4.836298e-03	k: 4176	n:890000
Cons ci ratio: 3.283777e-04	ci left: 9.936291e-01	ci right 9.939565e-01	k: 884477	n:890000
KS ci ratio: 1.150697e-01	ci left: 1.227298e-03	ci right 1.378225e-03	k: 1158	n:890000
DHCR24   890000 perm   469 sec   (1896 perm/sec)   p_kst 1.301124e-03   p_cons 9.937944e-01   p_joint 4.692135e-03

Joint ci ratio: 6.018741e-02	ci left: 4.549887e-03	ci right 4.833316e-03	k: 4221	n:900000
Cons ci ratio: 3.263698e-04	ci left: 9.936368e-01	ci right 9.939622e-01	k: 894421	n:900000
KS ci ratio: 1.144298e-01	ci left: 1.227692e-03	ci right 1.377770e-03	k: 1171	n:900000
DHCR24   900000 perm   478 sec   (1883 perm/sec)   p_kst 1.301111e-03   p_cons 9.938011e-01   p_joint 4.690000e-03

Joint ci ratio: 5.986926e-02	ci left: 4.548596e-03	ci right 4.830395e-03	k: 4266	n:910000
Cons ci ratio: 3.242531e-04	ci left: 9.936499e-01	ci right 9.939733e-01	k: 904370	n:910000
KS ci ratio: 1.139449e-01	ci left: 1.224875e-03	ci right 1.373932e-03	k: 1181	n:910000
DHCR24   910000 perm   487 sec   (1870 perm/sec)   p_kst 1.297802e-03   p_cons 9.938132e-01   p_joint 4.687912e-03

Joint ci ratio: 5.954917e-02	ci left: 4.548408e-03	ci right 4.828637e-03	k: 4312	n:920000
Cons ci ratio: 3.226889e-04	ci left: 9.936430e-01	ci right 9.939648e-01	k: 914301	n:920000
KS ci ratio: 1.134661e-01	ci left: 1.222122e-03	ci right 1.370177e-03	k: 1191	n:920000
DHCR24   920000 perm   495 sec   (1858 perm/sec)   p_kst 1.294565e-03   p_cons 9.938054e-01   p_joint 4.686957e-03

Joint ci ratio: 5.927516e-02	ci left: 4.541872e-03	ci right 4.820367e-03	k: 4352	n:930000
Cons ci ratio: 3.208665e-04	ci left: 9.936471e-01	ci right 9.939670e-01	k: 924242	n:930000
KS ci ratio: 1.128524e-01	ci left: 1.222564e-03	ci right 1.369818e-03	k: 1204	n:930000
DHCR24   930000 perm   504 sec   (1846 perm/sec)   p_kst 1.294624e-03   p_cons 9.938086e-01   p_joint 4.679570e-03

Joint ci ratio: 5.891066e-02	ci left: 4.550153e-03	ci right 4.827381e-03	k: 4406	n:940000
Cons ci ratio: 3.195432e-04	ci left: 9.936328e-01	ci right 9.939514e-01	k: 934166	n:940000
KS ci ratio: 1.122024e-01	ci left: 1.224032e-03	ci right 1.370558e-03	k: 1218	n:940000
DHCR24   940000 perm   513 sec   (1834 perm/sec)   p_kst 1.295745e-03   p_cons 9.937936e-01   p_joint 4.687234e-03

Joint ci ratio: 5.861223e-02	ci left: 4.548929e-03	ci right 4.824631e-03	k: 4451	n:950000
Cons ci ratio: 3.179363e-04	ci left: 9.936305e-01	ci right 9.939475e-01	k: 944101	n:950000
KS ci ratio: 1.115183e-01	ci left: 1.226495e-03	ci right 1.372362e-03	k: 1233	n:950000
DHCR24   950000 perm   521 sec   (1822 perm/sec)   p_kst 1.297895e-03   p_cons 9.937905e-01   p_joint 4.685263e-03

Joint ci ratio: 5.822730e-02	ci left: 4.562106e-03	ci right 4.836729e-03	k: 4510	n:960000
Cons ci ratio: 3.164334e-04	ci left: 9.936251e-01	ci right 9.939406e-01	k: 954033	n:960000
KS ci ratio: 1.110693e-01	ci left: 1.223846e-03	ci right 1.368773e-03	k: 1243	n:960000
DHCR24   960000 perm   530 sec   (1811 perm/sec)   p_kst 1.294792e-03   p_cons 9.937844e-01   p_joint 4.697917e-03

Joint ci ratio: 5.803515e-02	ci left: 4.545551e-03	ci right 4.818245e-03	k: 4540	n:970000
Cons ci ratio: 3.146886e-04	ci left: 9.936303e-01	ci right 9.939441e-01	k: 963975	n:970000
KS ci ratio: 1.106257e-01	ci left: 1.221252e-03	ci right 1.365257e-03	k: 1253	n:970000
DHCR24   970000 perm   539 sec   (1800 perm/sec)   p_kst 1.291753e-03   p_cons 9.937887e-01   p_joint 4.680412e-03

Joint ci ratio: 5.778143e-02	ci left: 4.539393e-03	ci right 4.810487e-03	k: 4580	n:980000
Cons ci ratio: 3.129722e-04	ci left: 9.936354e-01	ci right 9.939474e-01	k: 973917	n:980000
KS ci ratio: 1.102748e-01	ci left: 1.216728e-03	ci right 1.359715e-03	k: 1261	n:980000
DHCR24   980000 perm   548 sec   (1789 perm/sec)   p_kst 1.286735e-03   p_cons 9.937929e-01   p_joint 4.673469e-03

Joint ci ratio: 5.755603e-02	ci left: 4.529379e-03	ci right 4.798784e-03	k: 4616	n:990000
Cons ci ratio: 3.111304e-04	ci left: 9.936465e-01	ci right 9.939567e-01	k: 983865	n:990000
KS ci ratio: 1.098839e-01	ci left: 1.213279e-03	ci right 1.355322e-03	k: 1270	n:990000
DHCR24   990000 perm   557 sec   (1779 perm/sec)   p_kst 1.282828e-03   p_cons 9.938030e-01   p_joint 4.662626e-03

Joint ci ratio: 5.724679e-02	ci left: 4.533368e-03	ci right 4.801514e-03	k: 4666	n:1000000
Cons ci ratio: 3.095965e-04	ci left: 9.936462e-01	ci right 9.939549e-01	k: 993802	n:1000000
KS ci ratio: 1.094116e-01	ci left: 1.211844e-03	ci right 1.353070e-03	k: 1281	n:1000000
DHCR24   1000000 perm   566 sec   (1768 perm/sec)   p_kst 1.281000e-03   p_cons 9.938020e-01   p_joint 4.666000e-03

Joint ci ratio: 5.699714e-02	ci left: 4.528497e-03	ci right 4.795148e-03	k: 4707	n:1010000
Cons ci ratio: 3.078622e-04	ci left: 9.936550e-01	ci right 9.939619e-01	k: 1003748	n:1010000
KS ci ratio: 1.087769e-01	ci left: 1.214292e-03	ci right 1.354930e-03	k: 1296	n:1010000
DHCR24   1010000 perm   575 sec   (1758 perm/sec)   p_kst 1.283168e-03   p_cons 9.938099e-01   p_joint 4.660396e-03

Joint ci ratio: 5.677475e-02	ci left: 4.519858e-03	ci right 4.784928e-03	k: 4744	n:1020000
Cons ci ratio: 3.060585e-04	ci left: 9.936676e-01	ci right 9.939727e-01	k: 1013698	n:1020000
KS ci ratio: 1.081120e-01	ci left: 1.217648e-03	ci right 1.357758e-03	k: 1312	n:1020000
DHCR24   1020000 perm   584 sec   (1747 perm/sec)   p_kst 1.286275e-03   p_cons 9.938216e-01   p_joint 4.650980e-03

Joint ci ratio: 5.650748e-02	ci left: 4.519046e-03	ci right 4.782781e-03	k: 4789	n:1030000
Cons ci ratio: 3.046704e-04	ci left: 9.936642e-01	ci right 9.939680e-01	k: 1023632	n:1030000
KS ci ratio: 1.075807e-01	ci left: 1.218107e-03	ci right 1.357537e-03	k: 1325	n:1030000
DHCR24   1030000 perm   593 sec   (1738 perm/sec)   p_kst 1.286408e-03   p_cons 9.938175e-01   p_joint 4.649515e-03

Joint ci ratio: 5.615068e-02	ci left: 4.533422e-03	ci right 4.796271e-03	k: 4850	n:1040000
Cons ci ratio: 3.031823e-04	ci left: 9.936658e-01	ci right 9.939680e-01	k: 1033571	n:1040000
KS ci ratio: 1.069772e-01	ci left: 1.220431e-03	ci right 1.359294e-03	k: 1340	n:1040000
DHCR24   1040000 perm   602 sec   (1728 perm/sec)   p_kst 1.288462e-03   p_cons 9.938183e-01   p_joint 4.663462e-03

Joint ci ratio: 5.587488e-02	ci left: 4.535321e-03	ci right 4.796947e-03	k: 4898	n:1050000
Cons ci ratio: 3.018094e-04	ci left: 9.936634e-01	ci right 9.939643e-01	k: 1043506	n:1050000
KS ci ratio: 1.064624e-01	ci left: 1.220858e-03	ci right 1.359059e-03	k: 1353	n:1050000
DHCR24   1050000 perm   611 sec   (1718 perm/sec)   p_kst 1.288571e-03   p_cons 9.938152e-01   p_joint 4.664762e-03

Joint ci ratio: 5.559182e-02	ci left: 4.539048e-03	ci right 4.799519e-03	k: 4948	n:1060000
Cons ci ratio: 3.004548e-04	ci left: 9.936612e-01	ci right 9.939607e-01	k: 1053441	n:1060000
KS ci ratio: 1.059550e-01	ci left: 1.221279e-03	ci right 1.358828e-03	k: 1366	n:1060000
DHCR24   1060000 perm   621 sec   (1707 perm/sec)   p_kst 1.288679e-03   p_cons 9.938123e-01   p_joint 4.667925e-03

Joint ci ratio: 5.532971e-02	ci left: 4.539943e-03	ci right 4.799198e-03	k: 4995	n:1070000
Cons ci ratio: 2.991409e-04	ci left: 9.936580e-01	ci right 9.939562e-01	k: 1063375	n:1070000
KS ci ratio: 1.054165e-01	ci left: 1.222603e-03	ci right 1.359558e-03	k: 1380	n:1070000
DHCR24   1070000 perm   630 sec   (1697 perm/sec)   p_kst 1.289720e-03   p_cons 9.938084e-01   p_joint 4.668224e-03

Joint ci ratio: 5.506030e-02	ci left: 4.542651e-03	ci right 4.800758e-03	k: 5044	n:1080000
Cons ci ratio: 2.979112e-04	ci left: 9.936520e-01	ci right 9.939490e-01	k: 1073306	n:1080000
KS ci ratio: 1.048485e-01	ci left: 1.224807e-03	ci right 1.361224e-03	k: 1395	n:1080000
DHCR24   1080000 perm   640 sec   (1688 perm/sec)   p_kst 1.291667e-03   p_cons 9.938019e-01   p_joint 4.670370e-03

Joint ci ratio: 5.478938e-02	ci left: 4.546217e-03	ci right 4.803215e-03	k: 5094	n:1090000
Cons ci ratio: 2.964534e-04	ci left: 9.936564e-01	ci right 9.939519e-01	k: 1083248	n:1090000
KS ci ratio: 1.042896e-01	ci left: 1.226972e-03	ci right 1.362857e-03	k: 1410	n:1090000
DHCR24   1090000 perm   650 sec   (1677 perm/sec)   p_kst 1.293578e-03   p_cons 9.938055e-01   p_joint 4.673394e-03

Joint ci ratio: 5.449051e-02	ci left: 4.555102e-03	ci right 4.811153e-03	k: 5150	n:1100000
Cons ci ratio: 2.952345e-04	ci left: 9.936515e-01	ci right 9.939458e-01	k: 1093180	n:1100000
KS ci ratio: 1.035579e-01	ci left: 1.233527e-03	ci right 1.369121e-03	k: 1430	n:1100000
DHCR24   1100000 perm   660 sec   (1667 perm/sec)   p_kst 1.300000e-03   p_cons 9.938000e-01   p_joint 4.681818e-03

Joint ci ratio: 5.425408e-02	ci left: 4.554054e-03	ci right 4.808901e-03	k: 5195	n:1110000
Cons ci ratio: 2.941162e-04	ci left: 9.936431e-01	ci right 9.939363e-01	k: 1103108	n:1110000
KS ci ratio: 1.031265e-01	ci left: 1.232945e-03	ci right 1.367877e-03	k: 1442	n:1110000
DHCR24   1110000 perm   670 sec   (1657 perm/sec)   p_kst 1.299099e-03   p_cons 9.937910e-01   p_joint 4.680180e-03

Joint ci ratio: 5.397417e-02	ci left: 4.560955e-03	ci right 4.814831e-03	k: 5249	n:1120000
Cons ci ratio: 2.930099e-04	ci left: 9.936348e-01	ci right 9.939269e-01	k: 1113036	n:1120000
KS ci ratio: 1.027004e-01	ci left: 1.232375e-03	ci right 1.366654e-03	k: 1454	n:1120000
DHCR24   1120000 perm   680 sec   (1647 perm/sec)   p_kst 1.298214e-03   p_cons 9.937821e-01   p_joint 4.686607e-03

Joint ci ratio: 5.375967e-02	ci left: 4.557260e-03	ci right 4.809891e-03	k: 5291	n:1130000
Cons ci ratio: 2.919571e-04	ci left: 9.936249e-01	ci right 9.939159e-01	k: 1122962	n:1130000
KS ci ratio: 1.023145e-01	ci left: 1.230954e-03	ci right 1.364543e-03	k: 1465	n:1130000
DHCR24   1130000 perm   690 sec   (1637 perm/sec)   p_kst 1.296460e-03   p_cons 9.937717e-01   p_joint 4.682301e-03

Joint ci ratio: 5.351749e-02	ci left: 4.558825e-03	ci right 4.810369e-03	k: 5339	n:1140000
Cons ci ratio: 2.905442e-04	ci left: 9.936311e-01	ci right 9.939207e-01	k: 1132906	n:1140000
KS ci ratio: 1.018638e-01	ci left: 1.231269e-03	ci right 1.364268e-03	k: 1478	n:1140000
DHCR24   1140000 perm   701 sec   (1627 perm/sec)   p_kst 1.296491e-03   p_cons 9.937772e-01   p_joint 4.683333e-03

Joint ci ratio: 5.333825e-02	ci left: 4.550068e-03	ci right 4.800262e-03	k: 5375	n:1150000
Cons ci ratio: 2.890089e-04	ci left: 9.936434e-01	ci right 9.939315e-01	k: 1142857	n:1150000
KS ci ratio: 1.015555e-01	ci left: 1.228189e-03	ci right 1.360430e-03	k: 1487	n:1150000
DHCR24   1150000 perm   711 sec   (1617 perm/sec)   p_kst 1.293043e-03   p_cons 9.937887e-01   p_joint 4.673913e-03

Joint ci ratio: 5.310169e-02	ci left: 4.551673e-03	ci right 4.800811e-03	k: 5423	n:1160000
Cons ci ratio: 2.876776e-04	ci left: 9.936476e-01	ci right 9.939344e-01	k: 1152799	n:1160000
KS ci ratio: 1.013177e-01	ci left: 1.223482e-03	ci right 1.354890e-03	k: 1494	n:1160000
DHCR24   1160000 perm   721 sec   (1608 perm/sec)   p_kst 1.287931e-03   p_cons 9.937922e-01   p_joint 4.675000e-03

Joint ci ratio: 5.288767e-02	ci left: 4.549878e-03	ci right 4.797883e-03	k: 5467	n:1170000
Cons ci ratio: 2.861859e-04	ci left: 9.936596e-01	ci right 9.939448e-01	k: 1162750	n:1170000
KS ci ratio: 1.008465e-01	ci left: 1.224689e-03	ci right 1.355578e-03	k: 1508	n:1170000
DHCR24   1170000 perm   732 sec   (1598 perm/sec)   p_kst 1.288889e-03   p_cons 9.938034e-01   p_joint 4.672650e-03

Joint ci ratio: 5.267622e-02	ci left: 4.548115e-03	ci right 4.795004e-03	k: 5511	n:1180000
Cons ci ratio: 2.851279e-04	ci left: 9.936533e-01	ci right 9.939375e-01	k: 1172680	n:1180000
KS ci ratio: 1.005142e-01	ci left: 1.222571e-03	ci right 1.352778e-03	k: 1518	n:1180000
DHCR24   1180000 perm   743 sec   (1589 perm/sec)   p_kst 1.286441e-03   p_cons 9.937966e-01   p_joint 4.670339e-03

Joint ci ratio: 5.239627e-02	ci left: 4.558825e-03	ci right 4.804940e-03	k: 5570	n:1190000
Cons ci ratio: 2.839072e-04	ci left: 9.936548e-01	ci right 9.939378e-01	k: 1182619	n:1190000
KS ci ratio: 1.001195e-01	ci left: 1.222128e-03	ci right 1.351747e-03	k: 1530	n:1190000
DHCR24   1190000 perm   753 sec   (1579 perm/sec)   p_kst 1.285714e-03   p_cons 9.937975e-01   p_joint 4.680672e-03

Joint ci ratio: 5.217663e-02	ci left: 4.559490e-03	ci right 4.804577e-03	k: 5617	n:1200000
Cons ci ratio: 2.823961e-04	ci left: 9.936697e-01	ci right 9.939512e-01	k: 1192574	n:1200000
KS ci ratio: 9.966482e-02	ci left: 1.223319e-03	ci right 1.352441e-03	k: 1544	n:1200000
DHCR24   1200000 perm   764 sec   (1570 perm/sec)   p_kst 1.286667e-03   p_cons 9.938117e-01   p_joint 4.680833e-03

Outputting figure to mutsig2_images.part000000000049/DHCR24.2_1587_1200000_0.0012867_0.99381_0.0046808.png
                gene_name: DHCR24
               theta_stop: 0.100 
                    nperm: 1200000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0048 

Current progress: 96 percent done.
DHCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
Cons ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
KS ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
DHCR7   10000 perm   2 sec   (6363 perm/sec)   p_kst 7.305000e-01   p_cons 7.142000e-01   p_joint 8.382000e-01

Outputting figure to mutsig2_images.part000000000049/DHCR7.2_1456_10000_0.7305_0.7142_0.8382.png
                gene_name: DHCR7
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 98 percent done.
DHFRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
Cons ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
KS ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
DHFRL1   10000 perm   1 sec   (6845 perm/sec)   p_kst 6.030000e-02   p_cons 8.521000e-01   p_joint 3.085000e-01

Joint ci ratio: 4.587388e-02	ci left: 2.612751e-01	ci right 2.735926e-01	k: 5348	n:20000
Cons ci ratio: 1.163801e-02	ci left: 8.451275e-01	ci right 8.550705e-01	k: 17003	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
DHFRL1   20000 perm   3 sec   (6032 perm/sec)   p_kst 6.120000e-02   p_cons 8.501500e-01   p_joint 2.674000e-01

Joint ci ratio: 4.832683e-02	ci left: 1.755020e-01	ci right 1.842268e-01	k: 5395	n:30000
Cons ci ratio: 9.415658e-03	ci left: 8.484029e-01	ci right 8.564621e-01	k: 25574	n:30000
KS ci ratio: 8.936817e-02	ci left: 5.756710e-02	ci right 6.298511e-02	k: 1807	n:30000
DHFRL1   30000 perm   5 sec   (5728 perm/sec)   p_kst 6.023333e-02   p_cons 8.524667e-01   p_joint 1.798333e-01

Outputting figure to mutsig2_images.part000000000049/DHFRL1.2_568_30000_0.060233_0.85247_0.17983.png
                gene_name: DHFRL1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000049
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 49 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 4421880: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000050> was used as the working directory.
Started at Wed Oct 24 17:38:31 2012
Results reported at Wed Oct 24 18:33:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000050.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000050.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 50  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000050.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3396.90 sec.
    Max Memory :      5274 MB
    Max Swap   :      7737 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
50
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 50
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 50: processing genes 4434 - 4524
Calculating significance of each gene.
Using projection method.
4434	DHH	6.264511e-01
4435	DHODH	7.429999e-01
4436	DHPS	1
4437	DHRS1	1
4438	DHRS11	3.342338e-01
4439	DHRS12	8.197333e-01
4440	DHRS13	1
4441	DHRS2	2.064246e-02
4442	DHRS3	7.944262e-01
4443	DHRS4	6.770483e-01
4444	DHRS4L1	1
4445	DHRS4L2	1
4446	DHRS7	8.547755e-01
4447	DHRS7B	4.764461e-01
4448	DHRS7C	1
4449	DHRS9	7.687369e-01
4450	DHRSX	7.024471e-01
4451	DHTKD1	9.003816e-01
4452	DHX15	6.663672e-01
4453	DHX16	8.537097e-01
4454	DHX29	9.707317e-01
4455	DHX30	9.002655e-01
4456	DHX32	7.769395e-01
4457	DHX33	1
4458	DHX34	8.851772e-01
4459	DHX35	8.382167e-01
4460	DHX36	8.716579e-01
4461	DHX37	1
4462	DHX38	9.311502e-01
4463	DHX40	9.465793e-01
4464	DHX57	9.986292e-01
4465	DHX58	9.840337e-01
4466	DHX8	9.622277e-01
4467	DHX9	1
4468	DIABLO	1
4469	DIAPH1	9.947949e-01
4470	DIAPH2	4.693620e-01
4471	DIAPH3	9.820807e-01
4472	DICER1	1
4473	DIDO1	9.999658e-01
4474	DIMT1L	8.807789e-01
4475	DIO1	1
4476	DIO2	3.216182e-04
4477	DIO3	1.325327e-02
4478	DIP2A	3.571544e-01
4479	DIP2B	8.172225e-01
In gene DIP2C the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 4600    n = 1	mu =   3.01e-07
4480	DIP2C	9.962693e-01
4481	DIRAS1	1
4482	DIRAS2	4.141114e-01
4483	DIRAS3	3.967701e-01
4484	DIRC1	1.784179e-02
4485	DIRC2	1
4486	DIS3	3.223944e-01
4487	DIS3L	9.631699e-01
4488	DIS3L2	9.896426e-01
4489	DISC1	9.898847e-01
4490	DISP1	9.949975e-01
4491	DISP2	1
4492	DIXDC1	4.970847e-01
4493	DKC1	7.711459e-01
4494	DKFZp761E198	1
4495	DKK1	4.710551e-01
4496	DKK2	5.446476e-01
4497	DKK3	1
4498	DKK4	4.405537e-01
4499	DKKL1	6.262008e-01
4500	DLAT	5.318652e-01
4501	DLC1	8.540199e-01
4502	DLD	6.422687e-01
4503	DLEC1	1
4504	DLEU7	1
4505	DLG1	9.689278e-01
4506	DLG2	8.288850e-01
4507	DLG3	8.174497e-01
4508	DLG4	9.930520e-01
4509	DLG5	9.788331e-01
4510	DLGAP1	9.921406e-01
4511	DLGAP2	4.626538e-01
4512	DLGAP3	2.789527e-01
4513	DLGAP4	9.705705e-01
4514	DLGAP5	9.074106e-01
4515	DLK1	1
4516	DLK2	1
4517	DLL1	7.494386e-01
4518	DLL3	3.548794e-01
4519	DLL4	1
4520	DLST	6.514724e-01
4521	DLX1	1
4522	DLX2	1.984738e-01
4523	DLX3	7.633622e-01
4524	DLX4	7.797899e-01
Done

Running MutSig 2:
Scatter job 50: processing genes 4434 - 4524
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DIDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
DIDO1   10000 perm   3 sec   (3434 perm/sec)   p_kst 8.799000e-01   p_cons 3.055000e-01   p_joint 7.104000e-01

Outputting figure to mutsig2_images.part000000000050/DIDO1.15_6909_10000_0.8799_0.3055_0.7104.png
                gene_name: DIDO1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 2 percent done.
DLGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
DLGAP2   10000 perm   2 sec   (4835 perm/sec)   p_kst 7.400000e-03   p_cons 2.160000e-01   p_joint 8.400000e-03

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 5.225271e-02	ci left: 2.138292e-01	ci right 2.253524e-01	k: 4391	n:20000
KS ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
DLGAP2   20000 perm   5 sec   (4315 perm/sec)   p_kst 8.000000e-03   p_cons 2.195500e-01   p_joint 2.415000e-02

Joint ci ratio: 1.618985e-01	ci left: 1.761317e-02	ci right 2.074760e-02	k: 574	n:30000
Cons ci ratio: 4.258563e-02	ci left: 2.155215e-01	ci right 2.249327e-01	k: 6606	n:30000
KS ci ratio: 2.406518e-01	ci left: 7.711591e-03	ci right 9.851836e-03	k: 262	n:30000
DLGAP2   30000 perm   7 sec   (4138 perm/sec)   p_kst 8.733333e-03   p_cons 2.202000e-01   p_joint 1.913333e-02

Joint ci ratio: 1.516708e-01	ci left: 1.517804e-02	ci right 1.769286e-02	k: 656	n:40000
Cons ci ratio: 3.692959e-02	ci left: 2.157001e-01	ci right 2.238406e-01	k: 8790	n:40000
KS ci ratio: 2.089128e-01	ci left: 7.813225e-03	ci right 9.659157e-03	k: 348	n:40000
DLGAP2   40000 perm   10 sec   (4025 perm/sec)   p_kst 8.700000e-03   p_cons 2.197500e-01   p_joint 1.640000e-02

Joint ci ratio: 1.581376e-01	ci left: 1.117930e-02	ci right 1.311796e-02	k: 606	n:50000
Cons ci ratio: 3.290759e-02	ci left: 2.174092e-01	ci right 2.247032e-01	k: 11052	n:50000
KS ci ratio: 1.831358e-01	ci left: 8.248079e-03	ci right 9.929659e-03	k: 453	n:50000
DLGAP2   50000 perm   13 sec   (3939 perm/sec)   p_kst 9.060000e-03   p_cons 2.210400e-01   p_joint 1.212000e-02

Joint ci ratio: 1.501411e-01	ci left: 1.038937e-02	ci right 1.209173e-02	k: 673	n:60000
Cons ci ratio: 2.999773e-02	ci left: 2.182157e-01	ci right 2.248780e-01	k: 13292	n:60000
KS ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
DLGAP2   60000 perm   15 sec   (3872 perm/sec)   p_kst 9.216667e-03   p_cons 2.215333e-01   p_joint 1.121667e-02

Joint ci ratio: 1.303375e-01	ci left: 1.192506e-02	ci right 1.360140e-02	k: 892	n:70000
Cons ci ratio: 2.773289e-02	ci left: 2.189542e-01	ci right 2.251260e-01	k: 15542	n:70000
KS ci ratio: 1.523304e-01	ci left: 8.657166e-03	ci right 1.009823e-02	k: 655	n:70000
DLGAP2   70000 perm   18 sec   (3793 perm/sec)   p_kst 9.357143e-03   p_cons 2.220286e-01   p_joint 1.274286e-02

Joint ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
Cons ci ratio: 2.594403e-02	ci left: 2.191240e-01	ci right 2.248961e-01	k: 17760	n:80000
KS ci ratio: 1.433354e-01	ci left: 8.598224e-03	ci right 9.937727e-03	k: 740	n:80000
DLGAP2   80000 perm   21 sec   (3736 perm/sec)   p_kst 9.250000e-03   p_cons 2.220000e-01   p_joint 1.401250e-02

Joint ci ratio: 1.136576e-01	ci left: 1.230253e-02	ci right 1.379577e-02	k: 1173	n:90000
Cons ci ratio: 2.445802e-02	ci left: 2.193215e-01	ci right 2.247631e-01	k: 19983	n:90000
KS ci ratio: 1.352712e-01	ci left: 8.618762e-03	ci right 9.879840e-03	k: 831	n:90000
DLGAP2   90000 perm   24 sec   (3674 perm/sec)   p_kst 9.233333e-03   p_cons 2.220333e-01   p_joint 1.303333e-02

Joint ci ratio: 1.108087e-01	ci left: 1.167466e-02	ci right 1.305384e-02	k: 1235	n:100000
Cons ci ratio: 2.317370e-02	ci left: 2.198953e-01	ci right 2.250608e-01	k: 22247	n:100000
KS ci ratio: 1.282207e-01	ci left: 8.665931e-03	ci right 9.862792e-03	k: 925	n:100000
DLGAP2   100000 perm   28 sec   (3618 perm/sec)   p_kst 9.250000e-03   p_cons 2.224700e-01   p_joint 1.235000e-02

Joint ci ratio: 1.080764e-01	ci left: 1.117906e-02	ci right 1.246505e-02	k: 1299	n:110000
Cons ci ratio: 2.210444e-02	ci left: 2.198728e-01	ci right 2.247964e-01	k: 24456	n:110000
KS ci ratio: 1.224724e-01	ci left: 8.661846e-03	ci right 9.800619e-03	k: 1014	n:110000
DLGAP2   110000 perm   31 sec   (3570 perm/sec)   p_kst 9.218182e-03   p_cons 2.223273e-01   p_joint 1.180909e-02

Joint ci ratio: 1.020709e-01	ci left: 1.152154e-02	ci right 1.276887e-02	k: 1456	n:120000
Cons ci ratio: 2.113608e-02	ci left: 2.204232e-01	ci right 2.251402e-01	k: 26733	n:120000
KS ci ratio: 1.174337e-01	ci left: 8.659442e-03	ci right 9.747808e-03	k: 1103	n:120000
DLGAP2   120000 perm   34 sec   (3522 perm/sec)   p_kst 9.191667e-03   p_cons 2.227750e-01   p_joint 1.213333e-02

Joint ci ratio: 9.910187e-02	ci left: 1.130260e-02	ci right 1.248855e-02	k: 1545	n:130000
Cons ci ratio: 2.029149e-02	ci left: 2.207779e-01	ci right 2.253114e-01	k: 28995	n:130000
KS ci ratio: 1.135961e-01	ci left: 8.561031e-03	ci right 9.599506e-03	k: 1179	n:130000
DLGAP2   130000 perm   37 sec   (3476 perm/sec)   p_kst 9.069231e-03   p_cons 2.230385e-01   p_joint 1.188462e-02

Joint ci ratio: 8.819570e-02	ci left: 1.330023e-02	ci right 1.453431e-02	k: 1947	n:140000
Cons ci ratio: 1.956041e-02	ci left: 2.207363e-01	ci right 2.251037e-01	k: 31208	n:140000
KS ci ratio: 1.092373e-01	ci left: 8.616150e-03	ci right 9.618626e-03	k: 1275	n:140000
DLGAP2   140000 perm   41 sec   (3430 perm/sec)   p_kst 9.107143e-03   p_cons 2.229143e-01   p_joint 1.390714e-02

Joint ci ratio: 8.800861e-02	ci left: 1.247851e-02	ci right 1.363376e-02	k: 1957	n:150000
Cons ci ratio: 1.891835e-02	ci left: 2.204238e-01	ci right 2.246403e-01	k: 33379	n:150000
KS ci ratio: 1.052286e-01	ci left: 8.684056e-03	ci right 9.655059e-03	k: 1374	n:150000
DLGAP2   150000 perm   44 sec   (3382 perm/sec)   p_kst 9.160000e-03   p_cons 2.225267e-01   p_joint 1.304667e-02

Joint ci ratio: 8.994772e-02	ci left: 1.120328e-02	ci right 1.226452e-02	k: 1876	n:160000
Cons ci ratio: 1.829921e-02	ci left: 2.208377e-01	ci right 2.249224e-01	k: 35660	n:160000
KS ci ratio: 1.014921e-01	ci left: 8.768432e-03	ci right 9.711980e-03	k: 1477	n:160000
DLGAP2   160000 perm   48 sec   (3331 perm/sec)   p_kst 9.231250e-03   p_cons 2.228750e-01   p_joint 1.172500e-02

Joint ci ratio: 8.207343e-02	ci left: 1.269742e-02	ci right 1.378986e-02	k: 2250	n:170000
Cons ci ratio: 1.775701e-02	ci left: 2.208178e-01	ci right 2.247799e-01	k: 37875	n:170000
KS ci ratio: 9.891982e-02	ci left: 8.699951e-03	ci right 9.611024e-03	k: 1555	n:170000
DLGAP2   170000 perm   52 sec   (3285 perm/sec)   p_kst 9.147059e-03   p_cons 2.227941e-01   p_joint 1.323529e-02

Outputting figure to mutsig2_images.part000000000050/DLGAP2.15_2972_170000_0.0091471_0.22279_0.013235.png
                gene_name: DLGAP2
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0091 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 3 percent done.
DIP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
Cons ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
KS ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
DIP2A   10000 perm   2 sec   (4188 perm/sec)   p_kst 9.668000e-01   p_cons 9.780000e-02   p_joint 3.515000e-01

Joint ci ratio: 4.153801e-02	ci left: 3.016547e-01	ci right 3.145011e-01	k: 6161	n:20000
Cons ci ratio: 8.486178e-02	ci left: 9.229449e-02	ci right 1.005233e-01	k: 1927	n:20000
KS ci ratio: 4.998291e-03	ci left: 9.660370e-01	ci right 9.709255e-01	k: 19371	n:20000
DIP2A   20000 perm   5 sec   (3827 perm/sec)   p_kst 9.685500e-01   p_cons 9.635000e-02   p_joint 3.080500e-01

Outputting figure to mutsig2_images.part000000000050/DIP2A.11_4981_20000_0.96855_0.09635_0.30805.png
                gene_name: DIP2A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 5 percent done.
DLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
Cons ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
KS ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
DLC1   10000 perm   2 sec   (4241 perm/sec)   p_kst 5.461000e-01   p_cons 9.820000e-01   p_joint 7.738000e-01

Outputting figure to mutsig2_images.part000000000050/DLC1.11_4740_10000_0.5461_0.982_0.7738.png
                gene_name: DLC1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 6 percent done.
DLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
Cons ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
KS ci ratio: 2.061251e-02	ci left: 7.751944e-01	ci right 7.914402e-01	k: 7834	n:10000
DLG2   10000 perm   2 sec   (4528 perm/sec)   p_kst 7.834000e-01   p_cons 1.987000e-01   p_joint 5.242000e-01

Outputting figure to mutsig2_images.part000000000050/DLG2.11_3237_10000_0.7834_0.1987_0.5242.png
                gene_name: DLG2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 8 percent done.
DLGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
DLGAP1   10000 perm   2 sec   (4640 perm/sec)   p_kst 3.458000e-01   p_cons 4.069000e-01   p_joint 5.974000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP1.11_3029_10000_0.3458_0.4069_0.5974.png
                gene_name: DLGAP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 10 percent done.
DHX57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
Cons ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
KS ci ratio: 4.967064e-02	ci left: 3.741540e-01	ci right 3.933138e-01	k: 3837	n:10000
DHX57   10000 perm   2 sec   (4375 perm/sec)   p_kst 3.837000e-01   p_cons 4.394000e-01   p_joint 4.941000e-01

Outputting figure to mutsig2_images.part000000000050/DHX57.10_4253_10000_0.3837_0.4394_0.4941.png
                gene_name: DHX57
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 11 percent done.
DLG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
DLG5   10000 perm   2 sec   (4062 perm/sec)   p_kst 8.450000e-02   p_cons 1.950000e-02   p_joint 1.240000e-02

Joint ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
Cons ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
KS ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
DLG5   20000 perm   5 sec   (3757 perm/sec)   p_kst 8.465000e-02   p_cons 1.735000e-02   p_joint 1.525000e-02

Joint ci ratio: 1.934640e-01	ci left: 1.219299e-02	ci right 1.483580e-02	k: 404	n:30000
Cons ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
KS ci ratio: 7.519258e-02	ci left: 7.993474e-02	ci right 8.621295e-02	k: 2491	n:30000
DLG5   30000 perm   8 sec   (3631 perm/sec)   p_kst 8.303333e-02   p_cons 1.516667e-02   p_joint 1.346667e-02

Joint ci ratio: 1.498265e-01	ci left: 1.556318e-02	ci right 1.810766e-02	k: 672	n:40000
Cons ci ratio: 1.560764e-01	ci left: 1.431219e-02	ci right 1.675887e-02	k: 620	n:40000
KS ci ratio: 6.444092e-02	ci left: 8.193984e-02	ci right 8.742063e-02	k: 3386	n:40000
DLG5   40000 perm   11 sec   (3545 perm/sec)   p_kst 8.465000e-02   p_cons 1.550000e-02   p_joint 1.680000e-02

Joint ci ratio: 1.441215e-01	ci left: 1.352833e-02	ci right 1.564858e-02	k: 728	n:50000
Cons ci ratio: 1.398971e-01	ci left: 1.437749e-02	ci right 1.655929e-02	k: 772	n:50000
KS ci ratio: 5.713614e-02	ci left: 8.357637e-02	ci right 8.851181e-02	k: 4301	n:50000
DLG5   50000 perm   14 sec   (3479 perm/sec)   p_kst 8.602000e-02   p_cons 1.544000e-02   p_joint 1.456000e-02

Joint ci ratio: 1.243210e-01	ci left: 1.528575e-02	ci right 1.732809e-02	k: 977	n:60000
Cons ci ratio: 1.281015e-01	ci left: 1.438145e-02	ci right 1.636583e-02	k: 921	n:60000
KS ci ratio: 5.466669e-02	ci left: 7.677146e-02	ci right 8.110271e-02	k: 4735	n:60000
DLG5   60000 perm   18 sec   (3390 perm/sec)   p_kst 7.891667e-02   p_cons 1.535000e-02   p_joint 1.628333e-02

Joint ci ratio: 1.225753e-01	ci left: 1.351664e-02	ci right 1.529537e-02	k: 1007	n:70000
Cons ci ratio: 1.175855e-01	ci left: 1.470884e-02	ci right 1.656020e-02	k: 1093	n:70000
KS ci ratio: 5.064807e-02	ci left: 7.682856e-02	ci right 8.083500e-02	k: 5517	n:70000
DLG5   70000 perm   21 sec   (3344 perm/sec)   p_kst 7.881429e-02   p_cons 1.561429e-02   p_joint 1.438571e-02

Joint ci ratio: 1.055063e-01	ci left: 1.606681e-02	ci right 1.786847e-02	k: 1356	n:80000
Cons ci ratio: 1.094274e-01	ci left: 1.492290e-02	ci right 1.666247e-02	k: 1262	n:80000
KS ci ratio: 4.727647e-02	ci left: 7.726352e-02	ci right 8.101706e-02	k: 6330	n:80000
DLG5   80000 perm   24 sec   (3299 perm/sec)   p_kst 7.912500e-02   p_cons 1.577500e-02   p_joint 1.695000e-02

Joint ci ratio: 1.047487e-01	ci left: 1.451901e-02	ci right 1.613467e-02	k: 1378	n:90000
Cons ci ratio: 1.027977e-01	ci left: 1.508201e-02	ci right 1.672718e-02	k: 1430	n:90000
KS ci ratio: 4.456040e-02	ci left: 7.741073e-02	ci right 8.094978e-02	k: 7125	n:90000
DLG5   90000 perm   28 sec   (3258 perm/sec)   p_kst 7.916667e-02   p_cons 1.588889e-02   p_joint 1.531111e-02

Joint ci ratio: 9.561546e-02	ci left: 1.573903e-02	ci right 1.732919e-02	k: 1652	n:100000
Cons ci ratio: 9.755372e-02	ci left: 1.511425e-02	ci right 1.667401e-02	k: 1588	n:100000
KS ci ratio: 4.221232e-02	ci left: 7.771172e-02	ci right 8.107273e-02	k: 7938	n:100000
DLG5   100000 perm   31 sec   (3214 perm/sec)   p_kst 7.938000e-02   p_cons 1.588000e-02   p_joint 1.652000e-02

Outputting figure to mutsig2_images.part000000000050/DLG5.10_5888_100000_0.07938_0.01588_0.01652.png
                gene_name: DLG5
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 13 percent done.
DIO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
DIO2   10000 perm   2 sec   (5309 perm/sec)   p_kst 3.492000e-01   p_cons 7.005000e-01   p_joint 5.176000e-01

Outputting figure to mutsig2_images.part000000000050/DIO2.9_942_10000_0.3492_0.7005_0.5176.png
                gene_name: DIO2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 14 percent done.
DIP2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
KS ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
DIP2C   10000 perm   2 sec   (4229 perm/sec)   p_kst 8.247000e-01   p_cons 5.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIP2C.9_4819_10000_0.8247_0.5608_1.png
                gene_name: DIP2C
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
DIS3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
Cons ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
KS ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
DIS3L2   10000 perm   2 sec   (5003 perm/sec)   p_kst 3.735000e-01   p_cons 6.900000e-02   p_joint 1.888000e-01

Joint ci ratio: 6.187209e-02	ci left: 1.619533e-01	ci right 1.723436e-01	k: 3342	n:20000
Cons ci ratio: 1.034758e-01	ci left: 6.347548e-02	ci right 7.045106e-02	k: 1338	n:20000
KS ci ratio: 3.619277e-02	ci left: 3.629545e-01	ci right 3.763835e-01	k: 7393	n:20000
DIS3L2   20000 perm   4 sec   (4461 perm/sec)   p_kst 3.696500e-01   p_cons 6.690000e-02   p_joint 1.671000e-01

Joint ci ratio: 5.486074e-02	ci left: 1.414289e-01	ci right 1.494399e-01	k: 4362	n:30000
Cons ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
KS ci ratio: 2.962323e-02	ci left: 3.630708e-01	ci right 3.740214e-01	k: 11056	n:30000
DIS3L2   30000 perm   7 sec   (4288 perm/sec)   p_kst 3.685333e-01   p_cons 6.626667e-02   p_joint 1.454000e-01

Outputting figure to mutsig2_images.part000000000050/DIS3L2.9_2738_30000_0.36853_0.066267_0.1454.png
                gene_name: DIS3L2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 17 percent done.
DLGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
DLGAP3   10000 perm   2 sec   (5128 perm/sec)   p_kst 3.000000e-03   p_cons 3.039000e-01   p_joint 1.400000e-02

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 4.340787e-02	ci left: 2.833198e-01	ci right 2.959414e-01	k: 5792	n:20000
KS ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
DLGAP3   20000 perm   6 sec   (3636 perm/sec)   p_kst 3.250000e-03   p_cons 2.896000e-01   p_joint 6.600000e-03

Joint ci ratio: 2.240543e-01	ci left: 8.968019e-03	ci right 1.126168e-02	k: 302	n:30000
Cons ci ratio: 3.524678e-02	ci left: 2.867591e-01	ci right 2.970812e-01	k: 8757	n:30000
KS ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
DLGAP3   30000 perm   8 sec   (3550 perm/sec)   p_kst 2.966667e-03   p_cons 2.919000e-01   p_joint 1.006667e-02

Joint ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
Cons ci ratio: 3.117264e-02	ci left: 2.788875e-01	ci right 2.877439e-01	k: 11332	n:40000
KS ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
DLGAP3   40000 perm   11 sec   (3627 perm/sec)   p_kst 2.875000e-03   p_cons 2.833000e-01   p_joint 8.275000e-03

Joint ci ratio: 1.635410e-01	ci left: 1.043036e-02	ci right 1.230702e-02	k: 567	n:50000
Cons ci ratio: 2.794118e-02	ci left: 2.784967e-01	ci right 2.864085e-01	k: 14122	n:50000
KS ci ratio: 3.206569e-01	ci left: 2.502884e-03	ci right 3.476241e-03	k: 148	n:50000
DLGAP3   50000 perm   14 sec   (3657 perm/sec)   p_kst 2.960000e-03   p_cons 2.824400e-01   p_joint 1.134000e-02

Joint ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
Cons ci ratio: 2.451549e-02	ci left: 2.951223e-01	ci right 3.024638e-01	k: 17927	n:60000
KS ci ratio: 2.942079e-01	ci left: 2.516469e-03	ci right 3.399364e-03	k: 176	n:60000
DLGAP3   60000 perm   16 sec   (3660 perm/sec)   p_kst 2.933333e-03   p_cons 2.987833e-01   p_joint 1.815000e-02

Joint ci ratio: 1.337148e-01	ci left: 1.131701e-02	ci right 1.295237e-02	k: 848	n:70000
Cons ci ratio: 2.308032e-02	ci left: 2.884482e-01	ci right 2.951977e-01	k: 20427	n:70000
KS ci ratio: 2.656923e-01	ci left: 2.688417e-03	ci right 3.525041e-03	k: 216	n:70000
DLGAP3   70000 perm   19 sec   (3643 perm/sec)   p_kst 3.085714e-03   p_cons 2.918143e-01   p_joint 1.211429e-02

Joint ci ratio: 1.311126e-01	ci left: 1.032504e-02	ci right 1.178574e-02	k: 883	n:80000
Cons ci ratio: 2.079526e-02	ci left: 3.043529e-01	ci right 3.107610e-01	k: 24604	n:80000
KS ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
DLGAP3   80000 perm   22 sec   (3622 perm/sec)   p_kst 3.075000e-03   p_cons 3.075500e-01   p_joint 1.103750e-02

Joint ci ratio: 1.239613e-01	ci left: 1.030727e-02	ci right 1.168008e-02	k: 988	n:90000
Cons ci ratio: 1.959861e-02	ci left: 3.046964e-01	ci right 3.107382e-01	k: 27694	n:90000
KS ci ratio: 2.322406e-01	ci left: 2.789208e-03	ci right 3.532276e-03	k: 283	n:90000
DLGAP3   90000 perm   25 sec   (3589 perm/sec)   p_kst 3.144444e-03   p_cons 3.077111e-01   p_joint 1.097778e-02

Joint ci ratio: 1.229672e-01	ci left: 9.441030e-03	ci right 1.068763e-02	k: 1005	n:100000
Cons ci ratio: 1.858294e-02	ci left: 3.050794e-01	ci right 3.108118e-01	k: 30794	n:100000
KS ci ratio: 2.160895e-01	ci left: 2.925632e-03	ci right 3.643657e-03	k: 327	n:100000
DLGAP3   100000 perm   28 sec   (3552 perm/sec)   p_kst 3.270000e-03   p_cons 3.079400e-01   p_joint 1.005000e-02

Joint ci ratio: 1.203945e-01	ci left: 8.970447e-03	ci right 1.012836e-02	k: 1049	n:110000
Cons ci ratio: 1.772778e-02	ci left: 3.049821e-01	ci right 3.104462e-01	k: 33848	n:110000
KS ci ratio: 2.062629e-01	ci left: 2.935197e-03	ci right 3.618680e-03	k: 359	n:110000
DLGAP3   110000 perm   31 sec   (3515 perm/sec)   p_kst 3.263636e-03   p_cons 3.077091e-01   p_joint 9.536364e-03

Joint ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
Cons ci ratio: 1.695554e-02	ci left: 3.055381e-01	ci right 3.107712e-01	k: 36978	n:120000
KS ci ratio: 1.969109e-01	ci left: 2.967553e-03	ci right 3.623481e-03	k: 394	n:120000
DLGAP3   120000 perm   34 sec   (3480 perm/sec)   p_kst 3.283333e-03   p_cons 3.081500e-01   p_joint 8.091667e-03

Joint ci ratio: 1.304322e-01	ci left: 6.449753e-03	ci right 7.357067e-03	k: 896	n:130000
Cons ci ratio: 1.628113e-02	ci left: 3.058823e-01	ci right 3.109109e-01	k: 40091	n:130000
KS ci ratio: 1.902859e-01	ci left: 2.944223e-03	ci right 3.570567e-03	k: 422	n:130000
DLGAP3   130000 perm   38 sec   (3441 perm/sec)   p_kst 3.246154e-03   p_cons 3.083923e-01   p_joint 6.892308e-03

Joint ci ratio: 1.038668e-01	ci left: 9.548028e-03	ci right 1.060098e-02	k: 1409	n:140000
Cons ci ratio: 1.569414e-02	ci left: 3.058316e-01	ci right 3.106764e-01	k: 43155	n:140000
KS ci ratio: 1.808983e-01	ci left: 3.040437e-03	ci right 3.651847e-03	k: 467	n:140000
DLGAP3   140000 perm   41 sec   (3402 perm/sec)   p_kst 3.335714e-03   p_cons 3.082500e-01   p_joint 1.006429e-02

Joint ci ratio: 9.199425e-02	ci left: 1.140948e-02	ci right 1.251617e-02	k: 1793	n:150000
Cons ci ratio: 1.514200e-02	ci left: 3.064757e-01	ci right 3.111584e-01	k: 46322	n:150000
KS ci ratio: 1.751906e-01	ci left: 3.035199e-03	ci right 3.624258e-03	k: 498	n:150000
DLGAP3   150000 perm   45 sec   (3362 perm/sec)   p_kst 3.320000e-03   p_cons 3.088133e-01   p_joint 1.195333e-02

Joint ci ratio: 9.263146e-02	ci left: 1.055574e-02	ci right 1.158709e-02	k: 1770	n:160000
Cons ci ratio: 1.466057e-02	ci left: 3.065678e-01	ci right 3.111016e-01	k: 49413	n:160000
KS ci ratio: 1.701523e-01	ci left: 3.024895e-03	ci right 3.593339e-03	k: 528	n:160000
DLGAP3   160000 perm   48 sec   (3324 perm/sec)   p_kst 3.300000e-03   p_cons 3.088313e-01   p_joint 1.106250e-02

Joint ci ratio: 1.097165e-01	ci left: 7.043846e-03	ci right 7.867203e-03	k: 1266	n:170000
Cons ci ratio: 1.447250e-02	ci left: 2.992720e-01	ci right 3.036406e-01	k: 51247	n:170000
KS ci ratio: 1.650812e-01	ci left: 3.032936e-03	ci right 3.584217e-03	k: 561	n:170000
DLGAP3   170000 perm   52 sec   (3277 perm/sec)   p_kst 3.300000e-03   p_cons 3.014529e-01   p_joint 7.447059e-03

Joint ci ratio: 1.047355e-01	ci left: 7.317588e-03	ci right 8.131720e-03	k: 1389	n:180000
Cons ci ratio: 1.406058e-02	ci left: 2.994580e-01	ci right 3.037039e-01	k: 54284	n:180000
KS ci ratio: 1.611187e-01	ci left: 3.013644e-03	ci right 3.546997e-03	k: 589	n:180000
DLGAP3   180000 perm   56 sec   (3227 perm/sec)   p_kst 3.272222e-03   p_cons 3.015778e-01   p_joint 7.716667e-03

Joint ci ratio: 1.017404e-01	ci left: 7.358023e-03	ci right 8.151844e-03	k: 1472	n:190000
Cons ci ratio: 1.368844e-02	ci left: 2.994264e-01	ci right 3.035586e-01	k: 57283	n:190000
KS ci ratio: 1.566673e-01	ci left: 3.026865e-03	ci right 3.546367e-03	k: 623	n:190000
DLGAP3   190000 perm   60 sec   (3193 perm/sec)   p_kst 3.278947e-03   p_cons 3.014895e-01   p_joint 7.747368e-03

Joint ci ratio: 1.022863e-01	ci left: 6.916955e-03	ci right 7.667432e-03	k: 1457	n:200000
Cons ci ratio: 1.334326e-02	ci left: 2.994343e-01	ci right 3.034615e-01	k: 60289	n:200000
KS ci ratio: 1.550681e-01	ci left: 2.937976e-03	ci right 3.436595e-03	k: 636	n:200000
DLGAP3   200000 perm   63 sec   (3160 perm/sec)   p_kst 3.180000e-03   p_cons 3.014450e-01   p_joint 7.285000e-03

Joint ci ratio: 1.007502e-01	ci left: 6.796399e-03	ci right 7.522067e-03	k: 1502	n:210000
Cons ci ratio: 1.302987e-02	ci left: 2.992192e-01	ci right 3.031482e-01	k: 63248	n:210000
KS ci ratio: 1.517698e-01	ci left: 2.926286e-03	ci right 3.411398e-03	k: 664	n:210000
DLGAP3   210000 perm   67 sec   (3129 perm/sec)   p_kst 3.161905e-03   p_cons 3.011810e-01   p_joint 7.152381e-03

Joint ci ratio: 1.014485e-01	ci left: 6.398795e-03	ci right 7.087025e-03	k: 1482	n:220000
Cons ci ratio: 1.273770e-02	ci left: 2.990201e-01	ci right 3.028579e-01	k: 66206	n:220000
KS ci ratio: 1.481383e-01	ci left: 2.937646e-03	ci right 3.411957e-03	k: 697	n:220000
DLGAP3   220000 perm   71 sec   (3097 perm/sec)   p_kst 3.168182e-03   p_cons 3.009364e-01   p_joint 6.736364e-03

Joint ci ratio: 9.913528e-02	ci left: 6.417303e-03	ci right 7.090870e-03	k: 1552	n:230000
Cons ci ratio: 1.246601e-02	ci left: 2.987829e-01	ci right 3.025352e-01	k: 69151	n:230000
KS ci ratio: 1.441632e-01	ci left: 2.973292e-03	ci right 3.439367e-03	k: 736	n:230000
DLGAP3   230000 perm   75 sec   (3063 perm/sec)   p_kst 3.200000e-03   p_cons 3.006565e-01   p_joint 6.747826e-03

Joint ci ratio: 9.344419e-02	ci left: 6.938882e-03	ci right 7.623098e-03	k: 1746	n:240000
Cons ci ratio: 1.221680e-02	ci left: 2.983666e-01	ci right 3.020382e-01	k: 72048	n:240000
KS ci ratio: 1.409481e-01	ci left: 2.986020e-03	ci right 3.442774e-03	k: 770	n:240000
DLGAP3   240000 perm   79 sec   (3029 perm/sec)   p_kst 3.208333e-03   p_cons 3.002000e-01   p_joint 7.275000e-03

Joint ci ratio: 9.172882e-02	ci left: 6.919210e-03	ci right 7.588290e-03	k: 1812	n:250000
Cons ci ratio: 1.197465e-02	ci left: 2.982399e-01	ci right 3.018367e-01	k: 75009	n:250000
KS ci ratio: 1.381112e-01	ci left: 2.990111e-03	ci right 3.437528e-03	k: 802	n:250000
DLGAP3   250000 perm   83 sec   (2999 perm/sec)   p_kst 3.208000e-03   p_cons 3.000360e-01   p_joint 7.248000e-03

Joint ci ratio: 9.204898e-02	ci left: 6.607945e-03	ci right 7.249274e-03	k: 1800	n:260000
Cons ci ratio: 1.175260e-02	ci left: 2.979010e-01	ci right 3.014266e-01	k: 77912	n:260000
KS ci ratio: 1.356837e-01	ci left: 2.982825e-03	ci right 3.420673e-03	k: 831	n:260000
DLGAP3   260000 perm   88 sec   (2968 perm/sec)   p_kst 3.196154e-03   p_cons 2.996615e-01   p_joint 6.923077e-03

Joint ci ratio: 9.016506e-02	ci left: 6.638279e-03	ci right 7.268671e-03	k: 1876	n:270000
Cons ci ratio: 1.154111e-02	ci left: 2.976358e-01	ci right 3.010944e-01	k: 80828	n:270000
KS ci ratio: 1.336135e-01	ci left: 2.965400e-03	ci right 3.393522e-03	k: 857	n:270000
DLGAP3   270000 perm   92 sec   (2939 perm/sec)   p_kst 3.174074e-03   p_cons 2.993630e-01   p_joint 6.948148e-03

Joint ci ratio: 8.917733e-02	ci left: 6.547820e-03	ci right 7.162454e-03	k: 1918	n:280000
Cons ci ratio: 1.132569e-02	ci left: 2.979428e-01	ci right 3.013399e-01	k: 83899	n:280000
KS ci ratio: 1.313376e-01	ci left: 2.963085e-03	ci right 3.383017e-03	k: 887	n:280000
DLGAP3   280000 perm   96 sec   (2911 perm/sec)   p_kst 3.167857e-03   p_cons 2.996393e-01   p_joint 6.850000e-03

Joint ci ratio: 8.801812e-02	ci left: 6.493990e-03	ci right 7.095240e-03	k: 1969	n:290000
Cons ci ratio: 1.113195e-02	ci left: 2.978504e-01	ci right 3.011881e-01	k: 86860	n:290000
KS ci ratio: 1.293864e-01	ci left: 2.950976e-03	ci right 3.362501e-03	k: 914	n:290000
DLGAP3   290000 perm   101 sec   (2882 perm/sec)   p_kst 3.151724e-03   p_cons 2.995172e-01   p_joint 6.789655e-03

Joint ci ratio: 8.714200e-02	ci left: 6.407925e-03	ci right 6.994999e-03	k: 2009	n:300000
Cons ci ratio: 1.094617e-02	ci left: 2.978280e-01	ci right 3.011093e-01	k: 89840	n:300000
KS ci ratio: 1.271142e-01	ci left: 2.959081e-03	ci right 3.363944e-03	k: 947	n:300000
DLGAP3   300000 perm   105 sec   (2845 perm/sec)   p_kst 3.156667e-03   p_cons 2.994667e-01   p_joint 6.696667e-03

Joint ci ratio: 8.346874e-02	ci left: 6.769531e-03	ci right 7.362320e-03	k: 2189	n:310000
Cons ci ratio: 1.018367e-02	ci left: 3.217469e-01	ci right 3.250435e-01	k: 100252	n:310000
KS ci ratio: 1.247028e-01	ci left: 2.979225e-03	ci right 3.378539e-03	k: 984	n:310000
DLGAP3   310000 perm   110 sec   (2815 perm/sec)   p_kst 3.174194e-03   p_cons 3.233935e-01   p_joint 7.061290e-03

Joint ci ratio: 8.394240e-02	ci left: 6.484514e-03	ci right 7.055724e-03	k: 2165	n:320000
Cons ci ratio: 1.002214e-02	ci left: 3.218230e-01	ci right 3.250677e-01	k: 103502	n:320000
KS ci ratio: 1.223037e-01	ci left: 3.004236e-03	ci right 3.398596e-03	k: 1023	n:320000
DLGAP3   320000 perm   115 sec   (2786 perm/sec)   p_kst 3.196875e-03   p_cons 3.234437e-01   p_joint 6.765625e-03

Joint ci ratio: 8.703812e-02	ci left: 5.843098e-03	ci right 6.377752e-03	k: 2015	n:330000
Cons ci ratio: 9.868266e-03	ci left: 3.218858e-01	ci right 3.250810e-01	k: 106749	n:330000
KS ci ratio: 1.205509e-01	ci left: 3.001346e-03	ci right 3.389277e-03	k: 1053	n:330000
DLGAP3   330000 perm   120 sec   (2755 perm/sec)   p_kst 3.190909e-03   p_cons 3.234818e-01   p_joint 6.106061e-03

Joint ci ratio: 8.562614e-02	ci left: 5.864049e-03	ci right 6.391480e-03	k: 2082	n:340000
Cons ci ratio: 9.722901e-03	ci left: 3.218718e-01	ci right 3.250195e-01	k: 109971	n:340000
KS ci ratio: 1.182168e-01	ci left: 3.032915e-03	ci right 3.416806e-03	k: 1095	n:340000
DLGAP3   340000 perm   125 sec   (2726 perm/sec)   p_kst 3.220588e-03   p_cons 3.234441e-01   p_joint 6.123529e-03

Joint ci ratio: 8.120241e-02	ci left: 6.345605e-03	ci right 6.885469e-03	k: 2314	n:350000
Cons ci ratio: 9.581962e-03	ci left: 3.219416e-01	ci right 3.250441e-01	k: 113222	n:350000
KS ci ratio: 1.168401e-01	ci left: 3.018360e-03	ci right 3.395653e-03	k: 1121	n:350000
DLGAP3   350000 perm   130 sec   (2697 perm/sec)   p_kst 3.202857e-03   p_cons 3.234914e-01   p_joint 6.611429e-03

Joint ci ratio: 8.126293e-02	ci left: 6.161151e-03	ci right 6.685730e-03	k: 2311	n:360000
Cons ci ratio: 9.446799e-03	ci left: 3.220163e-01	ci right 3.250755e-01	k: 116476	n:360000
KS ci ratio: 1.155104e-01	ci left: 3.004639e-03	ci right 3.375651e-03	k: 1147	n:360000
DLGAP3   360000 perm   135 sec   (2669 perm/sec)   p_kst 3.186111e-03   p_cons 3.235444e-01   p_joint 6.419444e-03

Joint ci ratio: 7.583230e-02	ci left: 6.898268e-03	ci right 7.444628e-03	k: 2652	n:370000
Cons ci ratio: 9.318638e-03	ci left: 3.220197e-01	ci right 3.250372e-01	k: 119705	n:370000
KS ci ratio: 1.134521e-01	ci left: 3.033699e-03	ci right 3.401177e-03	k: 1189	n:370000
DLGAP3   370000 perm   140 sec   (2643 perm/sec)   p_kst 3.213514e-03   p_cons 3.235270e-01   p_joint 7.167568e-03

Joint ci ratio: 7.559599e-02	ci left: 6.760606e-03	ci right 7.294321e-03	k: 2669	n:380000
Cons ci ratio: 9.197324e-03	ci left: 3.219390e-01	ci right 3.249163e-01	k: 122902	n:380000
KS ci ratio: 1.120488e-01	ci left: 3.030585e-03	ci right 3.392845e-03	k: 1219	n:380000
DLGAP3   380000 perm   145 sec   (2615 perm/sec)   p_kst 3.207895e-03   p_cons 3.234263e-01   p_joint 7.023684e-03

Joint ci ratio: 7.056207e-02	ci left: 7.574145e-03	ci right 8.130640e-03	k: 3061	n:390000
Cons ci ratio: 9.080096e-03	ci left: 3.218884e-01	ci right 3.248270e-01	k: 126109	n:390000
KS ci ratio: 1.106520e-01	ci left: 3.030151e-03	ci right 3.387550e-03	k: 1250	n:390000
DLGAP3   390000 perm   151 sec   (2590 perm/sec)   p_kst 3.205128e-03   p_cons 3.233564e-01   p_joint 7.848718e-03

Joint ci ratio: 6.963551e-02	ci left: 7.586200e-03	ci right 8.135965e-03	k: 3143	n:400000
Cons ci ratio: 8.967546e-03	ci left: 3.218256e-01	ci right 3.247270e-01	k: 129310	n:400000
KS ci ratio: 1.092207e-01	ci left: 3.034629e-03	ci right 3.387628e-03	k: 1283	n:400000
DLGAP3   400000 perm   156 sec   (2564 perm/sec)   p_kst 3.207500e-03   p_cons 3.232750e-01   p_joint 7.857500e-03

Joint ci ratio: 7.079733e-02	ci left: 7.159099e-03	ci right 7.686923e-03	k: 3042	n:410000
Cons ci ratio: 8.858487e-03	ci left: 3.217952e-01	ci right 3.246609e-01	k: 132523	n:410000
KS ci ratio: 1.081322e-01	ci left: 3.022304e-03	ci right 3.370142e-03	k: 1309	n:410000
DLGAP3   410000 perm   162 sec   (2537 perm/sec)   p_kst 3.192683e-03   p_cons 3.232268e-01   p_joint 7.419512e-03

Joint ci ratio: 7.216582e-02	ci left: 6.724351e-03	ci right 7.230106e-03	k: 2929	n:420000
Cons ci ratio: 8.755314e-03	ci left: 3.216667e-01	ci right 3.244977e-01	k: 135694	n:420000
KS ci ratio: 1.069953e-01	ci left: 3.015216e-03	ci right 3.358361e-03	k: 1337	n:420000
DLGAP3   420000 perm   167 sec   (2512 perm/sec)   p_kst 3.183333e-03   p_cons 3.230810e-01   p_joint 6.973810e-03

Joint ci ratio: 7.432180e-02	ci left: 6.188929e-03	ci right 6.668921e-03	k: 2763	n:430000
Cons ci ratio: 8.653316e-03	ci left: 3.216627e-01	ci right 3.244606e-01	k: 138916	n:430000
KS ci ratio: 1.058935e-01	ci left: 3.008477e-03	ci right 3.347109e-03	k: 1365	n:430000
DLGAP3   430000 perm   173 sec   (2483 perm/sec)   p_kst 3.174419e-03   p_cons 3.230605e-01   p_joint 6.425581e-03

Joint ci ratio: 7.399128e-02	ci left: 6.104027e-03	ci right 6.575237e-03	k: 2788	n:440000
Cons ci ratio: 8.554090e-03	ci left: 3.216955e-01	ci right 3.244614e-01	k: 142154	n:440000
KS ci ratio: 1.050521e-01	ci left: 2.988782e-03	ci right 3.322359e-03	k: 1387	n:440000
DLGAP3   440000 perm   179 sec   (2459 perm/sec)   p_kst 3.152273e-03   p_cons 3.230773e-01   p_joint 6.336364e-03

Joint ci ratio: 7.316952e-02	ci left: 6.105806e-03	ci right 6.571696e-03	k: 2851	n:450000
Cons ci ratio: 8.461725e-03	ci left: 3.215450e-01	ci right 3.242795e-01	k: 145310	n:450000
KS ci ratio: 1.040455e-01	ci left: 2.980795e-03	ci right 3.310098e-03	k: 1414	n:450000
DLGAP3   450000 perm   185 sec   (2435 perm/sec)   p_kst 3.142222e-03   p_cons 3.229111e-01   p_joint 6.335556e-03

Joint ci ratio: 7.239955e-02	ci left: 6.103266e-03	ci right 6.563855e-03	k: 2912	n:460000
Cons ci ratio: 8.368418e-03	ci left: 3.216031e-01	ci right 3.243078e-01	k: 148559	n:460000
KS ci ratio: 1.029957e-01	ci left: 2.977406e-03	ci right 3.302815e-03	k: 1443	n:460000
DLGAP3   460000 perm   191 sec   (2413 perm/sec)   p_kst 3.136957e-03   p_cons 3.229543e-01   p_joint 6.330435e-03

Joint ci ratio: 7.158076e-02	ci left: 6.113397e-03	ci right 6.569317e-03	k: 2979	n:470000
Cons ci ratio: 8.281112e-03	ci left: 3.215016e-01	ci right 3.241772e-01	k: 151734	n:470000
KS ci ratio: 1.019424e-01	ci left: 2.976251e-03	ci right 3.298008e-03	k: 1473	n:470000
DLGAP3   470000 perm   197 sec   (2391 perm/sec)   p_kst 3.134043e-03   p_cons 3.228383e-01   p_joint 6.338298e-03

Joint ci ratio: 6.922855e-02	ci left: 6.405633e-03	ci right 6.867019e-03	k: 3184	n:480000
Cons ci ratio: 8.193905e-03	ci left: 3.215419e-01	ci right 3.241894e-01	k: 154975	n:480000
KS ci ratio: 1.007528e-01	ci left: 2.985315e-03	ci right 3.304063e-03	k: 1508	n:480000
DLGAP3   480000 perm   203 sec   (2370 perm/sec)   p_kst 3.141667e-03   p_cons 3.228646e-01   p_joint 6.633333e-03

Joint ci ratio: 6.869263e-02	ci left: 6.375184e-03	ci right 6.830680e-03	k: 3234	n:490000
Cons ci ratio: 8.109472e-03	ci left: 3.215765e-01	ci right 3.241970e-01	k: 158214	n:490000
KS ci ratio: 9.970119e-02	ci left: 2.988059e-03	ci right 3.303575e-03	k: 1540	n:490000
DLGAP3   490000 perm   209 sec   (2349 perm/sec)   p_kst 3.142857e-03   p_cons 3.228857e-01   p_joint 6.600000e-03

Outputting figure to mutsig2_images.part000000000050/DLGAP3.9_2980_490000_0.0031429_0.32289_0.0066.png
                gene_name: DLGAP3
               theta_stop: 0.100 
                    nperm: 490000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0030 
       ci_ks_bounds_right: 0.0033 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.0066 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0068 

Current progress: 19 percent done.
DHX38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
DHX38   10000 perm   2 sec   (4832 perm/sec)   p_kst 2.278000e-01   p_cons 1.945000e-01   p_joint 2.071000e-01

Outputting figure to mutsig2_images.part000000000050/DHX38.8_3788_10000_0.2278_0.1945_0.2071.png
                gene_name: DHX38
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 21 percent done.
DHX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
KS ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
DHX8   10000 perm   2 sec   (4653 perm/sec)   p_kst 9.511000e-01   p_cons 7.779000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX8.8_3755_10000_0.9511_0.7779_1.png
                gene_name: DHX8
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
DICER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
Cons ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
KS ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
DICER1   10000 perm   2 sec   (4106 perm/sec)   p_kst 2.463000e-01   p_cons 6.007000e-01   p_joint 4.097000e-01

Outputting figure to mutsig2_images.part000000000050/DICER1.8_5873_10000_0.2463_0.6007_0.4097.png
                gene_name: DICER1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 24 percent done.
DLGAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
Cons ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
KS ci ratio: 6.966016e-02	ci left: 2.320511e-01	ci right 2.489003e-01	k: 2404	n:10000
DLGAP4   10000 perm   2 sec   (4852 perm/sec)   p_kst 2.404000e-01   p_cons 9.840000e-01   p_joint 4.713000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP4.8_3142_10000_0.2404_0.984_0.4713.png
                gene_name: DLGAP4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 25 percent done.
DIP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.279280e-02	ci left: 3.459128e-01	ci right 3.647715e-01	k: 3553	n:10000
Cons ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
DIP2B   10000 perm   2 sec   (4376 perm/sec)   p_kst 3.980000e-01   p_cons 2.737000e-01   p_joint 3.553000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2B.7_4883_10000_0.398_0.2737_0.3553.png
                gene_name: DIP2B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 27 percent done.
DIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
DIS3   10000 perm   2 sec   (5156 perm/sec)   p_kst 1.628000e-01   p_cons 7.157000e-01   p_joint 4.116000e-01

Outputting figure to mutsig2_images.part000000000050/DIS3.7_3033_10000_0.1628_0.7157_0.4116.png
                gene_name: DIS3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 29 percent done.
DISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
KS ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
DISP1   10000 perm   2 sec   (4406 perm/sec)   p_kst 7.270000e-02   p_cons 4.454000e-01   p_joint 1.664000e-01

Joint ci ratio: 7.752260e-02	ci left: 1.089387e-01	ci right 1.177741e-01	k: 2266	n:20000
Cons ci ratio: 3.066002e-02	ci left: 4.427884e-01	ci right 4.566263e-01	k: 8994	n:20000
KS ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
DISP1   20000 perm   5 sec   (4120 perm/sec)   p_kst 7.470000e-02   p_cons 4.497000e-01   p_joint 1.133000e-01

Outputting figure to mutsig2_images.part000000000050/DISP1.7_4603_20000_0.0747_0.4497_0.1133.png
                gene_name: DISP1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 30 percent done.
DHX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
KS ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
DHX30   10000 perm   2 sec   (5165 perm/sec)   p_kst 6.787000e-01   p_cons 5.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX30.6_3676_10000_0.6787_0.5221_1.png
                gene_name: DHX30
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
DHX37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
Cons ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
DHX37   10000 perm   2 sec   (4913 perm/sec)   p_kst 1.861000e-01   p_cons 1.390000e-01   p_joint 1.400000e-01

Outputting figure to mutsig2_images.part000000000050/DHX37.6_3582_10000_0.1861_0.139_0.14.png
                gene_name: DHX37
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
DIAPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
DIAPH2   10000 perm   2 sec   (4778 perm/sec)   p_kst 9.660000e-02   p_cons 8.848000e-01   p_joint 1.804000e-01

Joint ci ratio: 5.971806e-02	ci left: 1.719303e-01	ci right 1.825637e-01	k: 3544	n:20000
Cons ci ratio: 1.004450e-02	ci left: 8.794303e-01	ci right 8.883578e-01	k: 17679	n:20000
KS ci ratio: 8.373686e-02	ci left: 9.459997e-02	ci right 1.029171e-01	k: 1974	n:20000
DIAPH2   20000 perm   5 sec   (4349 perm/sec)   p_kst 9.870000e-02   p_cons 8.839500e-01   p_joint 1.772000e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH2.6_3468_20000_0.0987_0.88395_0.1772.png
                gene_name: DIAPH2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 35 percent done.
DIAPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
Cons ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
KS ci ratio: 6.836926e-02	ci left: 2.388684e-01	ci right 2.558790e-01	k: 2473	n:10000
DIAPH3   10000 perm   2 sec   (4900 perm/sec)   p_kst 2.473000e-01   p_cons 1.892000e-01   p_joint 2.722000e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH3.6_3714_10000_0.2473_0.1892_0.2722.png
                gene_name: DIAPH3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 37 percent done.
DIO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
DIO3   10000 perm   2 sec   (5843 perm/sec)   p_kst 6.246000e-01   p_cons 8.182000e-01   p_joint 7.642000e-01

Outputting figure to mutsig2_images.part000000000050/DIO3.6_919_10000_0.6246_0.8182_0.7642.png
                gene_name: DIO3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 38 percent done.
DISC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
KS ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
DISC1   10000 perm   2 sec   (4916 perm/sec)   p_kst 8.907000e-01   p_cons 7.131000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DISC1.6_3458_10000_0.8907_0.7131_1.png
                gene_name: DISC1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
DLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
Cons ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
KS ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
DLD   10000 perm   2 sec   (5533 perm/sec)   p_kst 7.436000e-01   p_cons 4.583000e-01   p_joint 7.078000e-01

Outputting figure to mutsig2_images.part000000000050/DLD.6_1586_10000_0.7436_0.4583_0.7078.png
                gene_name: DLD
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 41 percent done.
DLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
Cons ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
DLEC1   10000 perm   2 sec   (4369 perm/sec)   p_kst 2.416000e-01   p_cons 1.064000e-01   p_joint 1.550000e-01

Joint ci ratio: 7.421998e-02	ci left: 1.178387e-01	ci right 1.269714e-01	k: 2447	n:20000
Cons ci ratio: 7.894354e-02	ci left: 1.054008e-01	ci right 1.141130e-01	k: 2194	n:20000
KS ci ratio: 4.901614e-02	ci left: 2.363250e-01	ci right 2.482500e-01	k: 4845	n:20000
DLEC1   20000 perm   5 sec   (3964 perm/sec)   p_kst 2.422500e-01   p_cons 1.097000e-01   p_joint 1.223500e-01

Outputting figure to mutsig2_images.part000000000050/DLEC1.6_5609_20000_0.24225_0.1097_0.12235.png
                gene_name: DLEC1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 43 percent done.
DHRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
KS ci ratio: 1.260847e-02	ci left: 9.004195e-01	ci right 9.119426e-01	k: 9063	n:10000
DHRS2   10000 perm   2 sec   (5505 perm/sec)   p_kst 9.063000e-01   p_cons 7.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHRS2.5_935_10000_0.9063_0.7988_1.png
                gene_name: DHRS2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
DHTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
DHTKD1   10000 perm   2 sec   (5542 perm/sec)   p_kst 5.606000e-01   p_cons 5.762000e-01   p_joint 8.020000e-01

Outputting figure to mutsig2_images.part000000000050/DHTKD1.5_2828_10000_0.5606_0.5762_0.802.png
                gene_name: DHTKD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 46 percent done.
DHX16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
Cons ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
DHX16   10000 perm   2 sec   (4918 perm/sec)   p_kst 3.260000e-02   p_cons 9.736000e-01   p_joint 7.160000e-02

Joint ci ratio: 7.278719e-02	ci left: 1.220210e-01	ci right 1.312878e-01	k: 2532	n:20000
Cons ci ratio: 4.474246e-03	ci left: 9.723763e-01	ci right 9.767842e-01	k: 19493	n:20000
KS ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
DHX16   20000 perm   4 sec   (4464 perm/sec)   p_kst 2.845000e-02   p_cons 9.746500e-01   p_joint 1.266000e-01

Joint ci ratio: 6.488445e-02	ci left: 1.049363e-01	ci right 1.120064e-01	k: 3253	n:30000
Cons ci ratio: 3.645975e-03	ci left: 9.728942e-01	ci right 9.764798e-01	k: 29242	n:30000
KS ci ratio: 1.322145e-01	ci left: 2.658166e-02	ci right 3.037705e-02	k: 853	n:30000
DHX16   30000 perm   7 sec   (4285 perm/sec)   p_kst 2.843333e-02   p_cons 9.747333e-01   p_joint 1.084333e-01

Joint ci ratio: 9.063469e-02	ci left: 4.264662e-02	ci right 4.671981e-02	k: 1786	n:40000
Cons ci ratio: 3.186266e-03	ci left: 9.726762e-01	ci right 9.758044e-01	k: 38971	n:40000
KS ci ratio: 1.117856e-01	ci left: 2.815539e-02	ci right 3.151333e-02	k: 1192	n:40000
DHX16   40000 perm   10 sec   (4164 perm/sec)   p_kst 2.980000e-02   p_cons 9.742750e-01   p_joint 4.465000e-02

Joint ci ratio: 7.211276e-02	ci left: 5.378425e-02	ci right 5.782752e-02	k: 2789	n:50000
Cons ci ratio: 2.853893e-03	ci left: 9.727725e-01	ci right 9.755720e-01	k: 48710	n:50000
KS ci ratio: 9.944430e-02	ci left: 2.863920e-02	ci right 3.165568e-02	k: 1506	n:50000
DHX16   50000 perm   12 sec   (4069 perm/sec)   p_kst 3.012000e-02   p_cons 9.742000e-01   p_joint 5.578000e-02

Outputting figure to mutsig2_images.part000000000050/DHX16.5_3237_50000_0.03012_0.9742_0.05578.png
                gene_name: DHX16
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 48 percent done.
DHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
Cons ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
KS ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
DHX9   10000 perm   2 sec   (4898 perm/sec)   p_kst 6.673000e-01   p_cons 9.900000e-03   p_joint 5.690000e-02

Joint ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
Cons ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
KS ci ratio: 1.958457e-02	ci left: 6.604195e-01	ci right 6.735319e-01	k: 13340	n:20000
DHX9   20000 perm   4 sec   (4467 perm/sec)   p_kst 6.670000e-01   p_cons 1.035000e-02   p_joint 6.045000e-02

Joint ci ratio: 8.429725e-02	ci left: 6.439222e-02	ci right 7.009194e-02	k: 2016	n:30000
Cons ci ratio: 2.176158e-01	ci left: 9.535129e-03	ci right 1.189440e-02	k: 320	n:30000
KS ci ratio: 1.602934e-02	ci left: 6.605635e-01	ci right 6.712710e-01	k: 19978	n:30000
DHX9   30000 perm   7 sec   (4295 perm/sec)   p_kst 6.659333e-01   p_cons 1.066667e-02   p_joint 6.720000e-02

Joint ci ratio: 7.103208e-02	ci left: 6.823140e-02	ci right 7.328113e-02	k: 2829	n:40000
Cons ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
KS ci ratio: 1.389621e-02	ci left: 6.608268e-01	ci right 6.700991e-01	k: 26619	n:40000
DHX9   40000 perm   10 sec   (4148 perm/sec)   p_kst 6.654750e-01   p_cons 1.030000e-02   p_joint 7.072500e-02

Joint ci ratio: 4.755882e-02	ci left: 1.167679e-01	ci right 1.224764e-01	k: 5980	n:50000
Cons ci ratio: 1.534701e-01	ci left: 1.189078e-02	ci right 1.388637e-02	k: 643	n:50000
KS ci ratio: 1.244804e-02	ci left: 6.606428e-01	ci right 6.689381e-01	k: 33240	n:50000
DHX9   50000 perm   12 sec   (4055 perm/sec)   p_kst 6.648000e-01   p_cons 1.286000e-02   p_joint 1.196000e-01

Joint ci ratio: 4.592803e-02	ci left: 1.057746e-01	ci right 1.107633e-01	k: 6495	n:60000
Cons ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
KS ci ratio: 1.136561e-02	ci left: 6.609230e-01	ci right 6.684944e-01	k: 39883	n:60000
DHX9   60000 perm   15 sec   (3983 perm/sec)   p_kst 6.647167e-01   p_cons 1.306667e-02   p_joint 1.082500e-01

Joint ci ratio: 4.274176e-02	ci left: 1.049740e-01	ci right 1.095729e-01	k: 7508	n:70000
Cons ci ratio: 1.274760e-01	ci left: 1.247828e-02	ci right 1.419098e-02	k: 932	n:70000
KS ci ratio: 1.054350e-02	ci left: 6.603152e-01	ci right 6.673284e-01	k: 46468	n:70000
DHX9   70000 perm   18 sec   (3917 perm/sec)   p_kst 6.638286e-01   p_cons 1.331429e-02   p_joint 1.072571e-01

Joint ci ratio: 3.676689e-02	ci left: 1.221204e-01	ci right 1.267069e-01	k: 9952	n:80000
Cons ci ratio: 1.015085e-01	ci left: 1.737027e-02	ci right 1.923990e-02	k: 1463	n:80000
KS ci ratio: 9.823712e-03	ci left: 6.623060e-01	ci right 6.688569e-01	k: 53247	n:80000
DHX9   80000 perm   21 sec   (3855 perm/sec)   p_kst 6.655875e-01   p_cons 1.828750e-02   p_joint 1.244000e-01

Joint ci ratio: 3.401013e-02	ci left: 1.264304e-01	ci right 1.308158e-01	k: 11575	n:90000
Cons ci ratio: 9.529145e-02	ci left: 1.757538e-02	ci right 1.934474e-02	k: 1660	n:90000
KS ci ratio: 9.247306e-03	ci left: 6.631974e-01	ci right 6.693697e-01	k: 59966	n:90000
DHX9   90000 perm   24 sec   (3793 perm/sec)   p_kst 6.662889e-01   p_cons 1.844444e-02   p_joint 1.286111e-01

Outputting figure to mutsig2_images.part000000000050/DHX9.5_3921_90000_0.66629_0.018444_0.12861.png
                gene_name: DHX9
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 49 percent done.
DLAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
Cons ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
KS ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
DLAT   10000 perm   2 sec   (5811 perm/sec)   p_kst 4.548000e-01   p_cons 5.954000e-01   p_joint 6.133000e-01

Outputting figure to mutsig2_images.part000000000050/DLAT.5_2000_10000_0.4548_0.5954_0.6133.png
                gene_name: DLAT
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 51 percent done.
DLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
Cons ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
DLK1   10000 perm   2 sec   (5627 perm/sec)   p_kst 2.610000e-02   p_cons 1.433000e-01   p_joint 2.070000e-02

Joint ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
Cons ci ratio: 6.795275e-02	ci left: 1.377812e-01	ci right 1.475230e-01	k: 2852	n:20000
KS ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
DLK1   20000 perm   4 sec   (5081 perm/sec)   p_kst 2.625000e-02   p_cons 1.426000e-01   p_joint 4.715000e-02

Joint ci ratio: 1.246762e-01	ci left: 2.990786e-02	ci right 3.391679e-02	k: 956	n:30000
Cons ci ratio: 5.558580e-02	ci left: 1.382331e-01	ci right 1.461697e-01	k: 4265	n:30000
KS ci ratio: 1.368183e-01	ci left: 2.480844e-02	ci right 2.848400e-02	k: 798	n:30000
DLK1   30000 perm   6 sec   (4863 perm/sec)   p_kst 2.660000e-02   p_cons 1.421667e-01   p_joint 3.186667e-02

Joint ci ratio: 1.131618e-01	ci left: 2.747453e-02	ci right 3.079429e-02	k: 1164	n:40000
Cons ci ratio: 4.590334e-02	ci left: 1.506488e-01	ci right 1.577515e-01	k: 6167	n:40000
KS ci ratio: 1.199028e-01	ci left: 2.446249e-02	ci right 2.760683e-02	k: 1040	n:40000
DLK1   40000 perm   8 sec   (4716 perm/sec)   p_kst 2.600000e-02   p_cons 1.541750e-01   p_joint 2.910000e-02

Joint ci ratio: 1.029484e-01	ci left: 2.672741e-02	ci right 2.964771e-02	k: 1408	n:50000
Cons ci ratio: 4.102581e-02	ci left: 1.512231e-01	ci right 1.575770e-01	k: 7719	n:50000
KS ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
DLK1   50000 perm   11 sec   (4602 perm/sec)   p_kst 2.656000e-02   p_cons 1.543800e-01   p_joint 2.816000e-02

Joint ci ratio: 1.169407e-01	ci left: 1.730729e-02	ci right 1.947299e-02	k: 1102	n:60000
Cons ci ratio: 3.963901e-02	ci left: 1.373649e-01	ci right 1.429366e-01	k: 8408	n:60000
KS ci ratio: 9.788456e-02	ci left: 2.475758e-02	ci right 2.732188e-02	k: 1561	n:60000
DLK1   60000 perm   13 sec   (4498 perm/sec)   p_kst 2.601667e-02   p_cons 1.401333e-01   p_joint 1.836667e-02

Joint ci ratio: 8.962702e-02	ci left: 2.540651e-02	ci right 2.780438e-02	k: 1861	n:70000
Cons ci ratio: 3.569442e-02	ci left: 1.443418e-01	ci right 1.496018e-01	k: 10287	n:70000
KS ci ratio: 9.060658e-02	ci left: 2.486161e-02	ci right 2.723504e-02	k: 1822	n:70000
DLK1   70000 perm   16 sec   (4406 perm/sec)   p_kst 2.602857e-02   p_cons 1.469571e-01   p_joint 2.658571e-02

Outputting figure to mutsig2_images.part000000000050/DLK1.5_1172_70000_0.026029_0.14696_0.026586.png
                gene_name: DLK1
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 52 percent done.
DLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
DLL1   10000 perm   2 sec   (5281 perm/sec)   p_kst 6.530000e-01   p_cons 1.248000e-01   p_joint 4.146000e-01

Joint ci ratio: 3.625109e-02	ci left: 3.622074e-01	ci right 3.756308e-01	k: 7378	n:20000
Cons ci ratio: 7.267225e-02	ci left: 1.223656e-01	ci right 1.316432e-01	k: 2539	n:20000
KS ci ratio: 2.007155e-02	ci left: 6.493691e-01	ci right 6.625855e-01	k: 13120	n:20000
DLL1   20000 perm   4 sec   (4784 perm/sec)   p_kst 6.560000e-01   p_cons 1.269500e-01   p_joint 3.689000e-01

Outputting figure to mutsig2_images.part000000000050/DLL1.5_2216_20000_0.656_0.12695_0.3689.png
                gene_name: DLL1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 54 percent done.
DHX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
Cons ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
DHX15   10000 perm   2 sec   (5338 perm/sec)   p_kst 4.818000e-01   p_cons 2.601000e-01   p_joint 4.073000e-01

Outputting figure to mutsig2_images.part000000000050/DHX15.4_2444_10000_0.4818_0.2601_0.4073.png
                gene_name: DHX15
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 56 percent done.
DHX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
Cons ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
KS ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
DHX32   10000 perm   2 sec   (5565 perm/sec)   p_kst 3.426000e-01   p_cons 6.990000e-02   p_joint 2.048000e-01

Joint ci ratio: 7.092353e-02	ci left: 1.277807e-01	ci right 1.372264e-01	k: 2649	n:20000
Cons ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
KS ci ratio: 3.843071e-02	ci left: 3.355732e-01	ci right 3.487727e-01	k: 6843	n:20000
DHX32   20000 perm   4 sec   (4975 perm/sec)   p_kst 3.421500e-01   p_cons 7.120000e-02   p_joint 1.324500e-01

Joint ci ratio: 4.831591e-02	ci left: 1.755680e-01	ci right 1.842941e-01	k: 5397	n:30000
Cons ci ratio: 8.100847e-02	ci left: 6.945964e-02	ci right 7.535682e-02	k: 2171	n:30000
KS ci ratio: 3.152780e-02	ci left: 3.346718e-01	ci right 3.454258e-01	k: 10201	n:30000
DHX32   30000 perm   6 sec   (4723 perm/sec)   p_kst 3.400333e-01   p_cons 7.236667e-02   p_joint 1.799000e-01

Outputting figure to mutsig2_images.part000000000050/DHX32.4_2276_30000_0.34003_0.072367_0.1799.png
                gene_name: DHX32
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 57 percent done.
DHX34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202889e-02	ci left: 9.083336e-01	ci right 9.194239e-01	k: 9140	n:10000
Cons ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
KS ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
DHX34   10000 perm   2 sec   (4968 perm/sec)   p_kst 7.164000e-01   p_cons 9.023000e-01   p_joint 9.140000e-01

Outputting figure to mutsig2_images.part000000000050/DHX34.4_3496_10000_0.7164_0.9023_0.914.png
                gene_name: DHX34
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 59 percent done.
DHX35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
Cons ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
DHX35   10000 perm   2 sec   (5459 perm/sec)   p_kst 4.474000e-01   p_cons 1.535000e-01   p_joint 3.397000e-01

Outputting figure to mutsig2_images.part000000000050/DHX35.4_2200_10000_0.4474_0.1535_0.3397.png
                gene_name: DHX35
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
DIAPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
DIAPH1   10000 perm   2 sec   (4973 perm/sec)   p_kst 2.052000e-01   p_cons 8.420000e-02   p_joint 1.070000e-01

Joint ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
Cons ci ratio: 9.094175e-02	ci left: 8.112153e-02	ci right 8.889961e-02	k: 1699	n:20000
KS ci ratio: 5.488815e-02	ci left: 1.975924e-01	ci right 2.087941e-01	k: 4063	n:20000
DIAPH1   20000 perm   4 sec   (4467 perm/sec)   p_kst 2.031500e-01   p_cons 8.495000e-02   p_joint 1.008500e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH1.4_3931_20000_0.20315_0.08495_0.10085.png
                gene_name: DIAPH1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
DIRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
Cons ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
KS ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
DIRC2   10000 perm   2 sec   (6532 perm/sec)   p_kst 3.269000e-01   p_cons 3.500000e-03   p_joint 7.470000e-02

Joint ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
Cons ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
KS ci ratio: 3.922059e-02	ci left: 3.265178e-01	ci right 3.396307e-01	k: 6661	n:20000
DIRC2   20000 perm   3 sec   (5767 perm/sec)   p_kst 3.330500e-01   p_cons 3.750000e-03   p_joint 1.167000e-01

Joint ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
Cons ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
KS ci ratio: 3.234814e-02	ci left: 3.232850e-01	ci right 3.339482e-01	k: 9858	n:30000
DIRC2   30000 perm   5 sec   (5475 perm/sec)   p_kst 3.286000e-01   p_cons 2.566667e-03   p_joint 4.670000e-02

Joint ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
Cons ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
KS ci ratio: 2.759484e-02	ci left: 3.306731e-01	ci right 3.399508e-01	k: 13412	n:40000
DIRC2   40000 perm   8 sec   (5288 perm/sec)   p_kst 3.353000e-01   p_cons 2.550000e-03   p_joint 4.080000e-02

Joint ci ratio: 9.968326e-02	ci left: 2.850258e-02	ci right 3.151231e-02	k: 1499	n:50000
Cons ci ratio: 3.381790e-01	ci left: 2.227623e-03	ci right 3.151624e-03	k: 133	n:50000
KS ci ratio: 2.462879e-02	ci left: 3.321187e-01	ci right 3.404204e-01	k: 16813	n:50000
DIRC2   50000 perm   10 sec   (5129 perm/sec)   p_kst 3.362600e-01   p_cons 2.660000e-03   p_joint 2.998000e-02

Joint ci ratio: 1.016201e-01	ci left: 2.296888e-02	ci right 2.544410e-02	k: 1451	n:60000
Cons ci ratio: 3.047492e-01	ci left: 2.331456e-03	ci right 3.184439e-03	k: 164	n:60000
KS ci ratio: 2.252561e-02	ci left: 3.316386e-01	ci right 3.392107e-01	k: 20125	n:60000
DIRC2   60000 perm   12 sec   (5002 perm/sec)   p_kst 3.354167e-01   p_cons 2.733333e-03   p_joint 2.418333e-02

Joint ci ratio: 9.583588e-02	ci left: 2.222303e-02	ci right 2.447387e-02	k: 1633	n:70000
Cons ci ratio: 2.839985e-01	ci left: 2.329191e-03	ci right 3.112935e-03	k: 189	n:70000
KS ci ratio: 2.085088e-02	ci left: 3.320020e-01	ci right 3.390117e-01	k: 23485	n:70000
DIRC2   70000 perm   14 sec   (4886 perm/sec)   p_kst 3.355000e-01   p_cons 2.700000e-03   p_joint 2.332857e-02

Joint ci ratio: 9.594905e-02	ci left: 1.945600e-02	ci right 2.142900e-02	k: 1634	n:80000
Cons ci ratio: 2.688681e-01	ci left: 2.293987e-03	ci right 3.017832e-03	k: 211	n:80000
KS ci ratio: 1.949500e-02	ci left: 3.324399e-01	ci right 3.389971e-01	k: 26857	n:80000
DIRC2   80000 perm   17 sec   (4782 perm/sec)   p_kst 3.357125e-01   p_cons 2.637500e-03   p_joint 2.042500e-02

Joint ci ratio: 9.268196e-02	ci left: 1.858486e-02	ci right 2.040185e-02	k: 1753	n:90000
Cons ci ratio: 2.542945e-01	ci left: 2.298677e-03	ci right 2.978457e-03	k: 236	n:90000
KS ci ratio: 1.835639e-02	ci left: 3.332021e-01	ci right 3.393862e-01	k: 30266	n:90000
DIRC2   90000 perm   19 sec   (4676 perm/sec)   p_kst 3.362889e-01   p_cons 2.622222e-03   p_joint 1.947778e-02

Joint ci ratio: 9.460215e-02	ci left: 1.608084e-02	ci right 1.768736e-02	k: 1687	n:100000
Cons ci ratio: 2.391298e-01	ci left: 2.359668e-03	ci right 3.009712e-03	k: 267	n:100000
KS ci ratio: 1.743510e-02	ci left: 3.328328e-01	ci right 3.386967e-01	k: 33576	n:100000
DIRC2   100000 perm   22 sec   (4586 perm/sec)   p_kst 3.357600e-01   p_cons 2.670000e-03   p_joint 1.687000e-02

Joint ci ratio: 9.464753e-02	ci left: 1.462730e-02	ci right 1.608933e-02	k: 1688	n:110000
Cons ci ratio: 2.298857e-01	ci left: 2.333402e-03	ci right 2.947834e-03	k: 289	n:110000
KS ci ratio: 1.662870e-02	ci left: 3.328366e-01	ci right 3.384267e-01	k: 36919	n:110000
DIRC2   110000 perm   24 sec   (4500 perm/sec)   p_kst 3.356273e-01   p_cons 2.627273e-03   p_joint 1.534545e-02

Joint ci ratio: 1.031513e-01	ci left: 1.127789e-02	ci right 1.251254e-02	k: 1426	n:120000
Cons ci ratio: 2.230750e-01	ci left: 2.280436e-03	ci right 2.860686e-03	k: 307	n:120000
KS ci ratio: 1.593099e-02	ci left: 3.326703e-01	ci right 3.380210e-01	k: 40241	n:120000
DIRC2   120000 perm   27 sec   (4420 perm/sec)   p_kst 3.353417e-01   p_cons 2.558333e-03   p_joint 1.188333e-02

Joint ci ratio: 1.008322e-01	ci left: 1.091249e-02	ci right 1.207869e-02	k: 1493	n:130000
Cons ci ratio: 2.165029e-01	ci left: 2.243122e-03	ci right 2.794827e-03	k: 326	n:130000
KS ci ratio: 1.530376e-02	ci left: 3.328410e-01	ci right 3.379817e-01	k: 43603	n:130000
DIRC2   130000 perm   30 sec   (4337 perm/sec)   p_kst 3.354077e-01   p_cons 2.507692e-03   p_joint 1.148462e-02

Joint ci ratio: 9.658673e-02	ci left: 1.106659e-02	ci right 1.219663e-02	k: 1627	n:140000
Cons ci ratio: 2.095703e-01	ci left: 2.231658e-03	ci right 2.760712e-03	k: 348	n:140000
KS ci ratio: 1.474498e-02	ci left: 3.329980e-01	ci right 3.379516e-01	k: 46966	n:140000
DIRC2   140000 perm   33 sec   (4260 perm/sec)   p_kst 3.354714e-01   p_cons 2.485714e-03   p_joint 1.162143e-02

Joint ci ratio: 9.579522e-02	ci left: 1.051084e-02	ci right 1.157485e-02	k: 1655	n:150000
Cons ci ratio: 2.029897e-01	ci left: 2.228295e-03	ci right 2.737907e-03	k: 371	n:150000
KS ci ratio: 1.423708e-02	ci left: 3.333300e-01	ci right 3.381163e-01	k: 50358	n:150000
DIRC2   150000 perm   36 sec   (4185 perm/sec)   p_kst 3.357200e-01   p_cons 2.473333e-03   p_joint 1.103333e-02

Joint ci ratio: 8.120153e-02	ci left: 1.377295e-02	ci right 1.494475e-02	k: 2296	n:160000
Cons ci ratio: 1.947803e-01	ci left: 2.279076e-03	ci right 2.776724e-03	k: 403	n:160000
KS ci ratio: 1.379046e-02	ci left: 3.332300e-01	ci right 3.378635e-01	k: 53687	n:160000
DIRC2   160000 perm   39 sec   (4114 perm/sec)   p_kst 3.355437e-01   p_cons 2.518750e-03   p_joint 1.435000e-02

Joint ci ratio: 8.470540e-02	ci left: 1.191389e-02	ci right 1.297342e-02	k: 2114	n:170000
Cons ci ratio: 1.896860e-01	ci left: 2.268196e-03	ci right 2.749021e-03	k: 425	n:170000
KS ci ratio: 1.337244e-02	ci left: 3.335079e-01	ci right 3.380036e-01	k: 57078	n:170000
DIRC2   170000 perm   42 sec   (4046 perm/sec)   p_kst 3.357529e-01   p_cons 2.500000e-03   p_joint 1.243529e-02

Joint ci ratio: 7.352907e-02	ci left: 1.497255e-02	ci right 1.612091e-02	k: 2797	n:180000
Cons ci ratio: 1.849715e-01	ci left: 2.258675e-03	ci right 2.724246e-03	k: 447	n:180000
KS ci ratio: 1.300501e-02	ci left: 3.332521e-01	ci right 3.376199e-01	k: 60378	n:180000
DIRC2   180000 perm   45 sec   (3981 perm/sec)   p_kst 3.354333e-01   p_cons 2.483333e-03   p_joint 1.553889e-02

Joint ci ratio: 7.215896e-02	ci left: 1.474252e-02	ci right 1.585129e-02	k: 2905	n:190000
Cons ci ratio: 1.785098e-01	ci left: 2.305587e-03	ci right 2.762434e-03	k: 480	n:190000
KS ci ratio: 1.263984e-02	ci left: 3.339549e-01	ci right 3.382080e-01	k: 63855	n:190000
DIRC2   190000 perm   48 sec   (3921 perm/sec)   p_kst 3.360789e-01   p_cons 2.526316e-03   p_joint 1.528947e-02

Joint ci ratio: 6.961821e-02	ci left: 1.506143e-02	ci right 1.615268e-02	k: 3120	n:200000
Cons ci ratio: 1.743901e-01	ci left: 2.300228e-03	ci right 2.744387e-03	k: 503	n:200000
KS ci ratio: 1.230240e-02	ci left: 3.346387e-01	ci right 3.387860e-01	k: 67342	n:200000
DIRC2   200000 perm   52 sec   (3859 perm/sec)   p_kst 3.367100e-01   p_cons 2.515000e-03   p_joint 1.560000e-02

Joint ci ratio: 6.593573e-02	ci left: 1.600631e-02	ci right 1.710233e-02	k: 3475	n:210000
Cons ci ratio: 1.715247e-01	ci left: 2.268138e-03	ci right 2.698159e-03	k: 520	n:210000
KS ci ratio: 1.201311e-02	ci left: 3.344219e-01	ci right 3.384683e-01	k: 70653	n:210000
DIRC2   210000 perm   55 sec   (3802 perm/sec)   p_kst 3.364429e-01   p_cons 2.476190e-03   p_joint 1.654762e-02

Joint ci ratio: 6.634010e-02	ci left: 1.510417e-02	ci right 1.614501e-02	k: 3436	n:220000
Cons ci ratio: 1.680152e-01	ci left: 2.260791e-03	ci right 2.679762e-03	k: 542	n:220000
KS ci ratio: 1.174330e-02	ci left: 3.342259e-01	ci right 3.381785e-01	k: 73964	n:220000
DIRC2   220000 perm   59 sec   (3745 perm/sec)   p_kst 3.362000e-01   p_cons 2.463636e-03   p_joint 1.561818e-02

Joint ci ratio: 7.319317e-02	ci left: 1.186633e-02	ci right 1.277210e-02	k: 2832	n:230000
Cons ci ratio: 1.657451e-01	ci left: 2.224986e-03	ci right 2.631194e-03	k: 557	n:230000
KS ci ratio: 1.160263e-02	ci left: 3.297497e-01	ci right 3.336023e-01	k: 76285	n:230000
DIRC2   230000 perm   62 sec   (3689 perm/sec)   p_kst 3.316739e-01   p_cons 2.421739e-03   p_joint 1.231304e-02

Joint ci ratio: 7.252872e-02	ci left: 1.158865e-02	ci right 1.246486e-02	k: 2885	n:240000
Cons ci ratio: 1.624317e-01	ci left: 2.224176e-03	ci right 2.621326e-03	k: 580	n:240000
KS ci ratio: 1.136889e-02	ci left: 3.293794e-01	ci right 3.331496e-01	k: 79503	n:240000
DIRC2   240000 perm   66 sec   (3629 perm/sec)   p_kst 3.312625e-01   p_cons 2.416667e-03   p_joint 1.202083e-02

Joint ci ratio: 5.882603e-02	ci left: 1.693835e-02	ci right 1.796888e-02	k: 4362	n:250000
Cons ci ratio: 1.421645e-01	ci left: 2.816403e-03	ci right 3.251245e-03	k: 757	n:250000
KS ci ratio: 1.113272e-02	ci left: 3.296746e-01	ci right 3.333693e-01	k: 82880	n:250000
DIRC2   250000 perm   70 sec   (3563 perm/sec)   p_kst 3.315200e-01   p_cons 3.028000e-03   p_joint 1.744800e-02

Joint ci ratio: 5.049102e-02	ci left: 2.208530e-02	ci right 2.323307e-02	k: 5890	n:260000
Cons ci ratio: 1.379475e-01	ci left: 2.882523e-03	ci right 3.313287e-03	k: 804	n:260000
KS ci ratio: 1.091428e-02	ci left: 3.298019e-01	ci right 3.334250e-01	k: 86219	n:260000
DIRC2   260000 perm   74 sec   (3513 perm/sec)   p_kst 3.316115e-01   p_cons 3.092308e-03   p_joint 2.265385e-02

Joint ci ratio: 5.063143e-02	ci left: 2.116834e-02	ci right 2.227159e-02	k: 5863	n:270000
Cons ci ratio: 1.353657e-01	ci left: 2.886652e-03	ci right 3.309310e-03	k: 835	n:270000
KS ci ratio: 1.070849e-02	ci left: 3.299092e-01	ci right 3.334647e-01	k: 89555	n:270000
DIRC2   270000 perm   78 sec   (3463 perm/sec)   p_kst 3.316852e-01   p_cons 3.092593e-03   p_joint 2.171481e-02

Joint ci ratio: 4.756176e-02	ci left: 2.312207e-02	ci right 2.425210e-02	k: 6631	n:280000
Cons ci ratio: 1.331550e-01	ci left: 2.880198e-03	ci right 3.294479e-03	k: 863	n:280000
KS ci ratio: 1.051975e-02	ci left: 3.297634e-01	ci right 3.332543e-01	k: 92822	n:280000
DIRC2   280000 perm   82 sec   (3414 perm/sec)   p_kst 3.315071e-01   p_cons 3.082143e-03   p_joint 2.368214e-02

Joint ci ratio: 4.734113e-02	ci left: 2.254949e-02	ci right 2.364628e-02	k: 6697	n:290000
Cons ci ratio: 1.306092e-01	ci left: 2.894256e-03	ci right 3.301982e-03	k: 897	n:290000
KS ci ratio: 1.033470e-02	ci left: 3.298831e-01	ci right 3.333134e-01	k: 96163	n:290000
DIRC2   290000 perm   87 sec   (3316 perm/sec)   p_kst 3.315966e-01   p_cons 3.093103e-03   p_joint 2.309310e-02

Joint ci ratio: 4.966502e-02	ci left: 1.983784e-02	ci right 2.085145e-02	k: 6102	n:300000
Cons ci ratio: 1.285504e-01	ci left: 2.891313e-03	ci right 3.291714e-03	k: 926	n:300000
KS ci ratio: 1.016214e-02	ci left: 3.298620e-01	ci right 3.332345e-01	k: 99464	n:300000
DIRC2   300000 perm   92 sec   (3270 perm/sec)   p_kst 3.315467e-01   p_cons 3.086667e-03   p_joint 2.034000e-02

Joint ci ratio: 5.046757e-02	ci left: 1.860831e-02	ci right 1.957490e-02	k: 5917	n:310000
Cons ci ratio: 1.264534e-01	ci left: 2.894856e-03	ci right 3.288718e-03	k: 957	n:310000
KS ci ratio: 1.000472e-02	ci left: 3.295432e-01	ci right 3.328599e-01	k: 102672	n:310000
DIRC2   310000 perm   96 sec   (3231 perm/sec)   p_kst 3.312000e-01   p_cons 3.087097e-03   p_joint 1.908710e-02

Joint ci ratio: 5.321909e-02	ci left: 1.622799e-02	ci right 1.711830e-02	k: 5334	n:320000
Cons ci ratio: 1.240788e-01	ci left: 2.916396e-03	ci right 3.305189e-03	k: 994	n:320000
KS ci ratio: 9.846396e-03	ci left: 3.296036e-01	ci right 3.328682e-01	k: 105995	n:320000
DIRC2   320000 perm   100 sec   (3192 perm/sec)   p_kst 3.312344e-01   p_cons 3.106250e-03   p_joint 1.666875e-02

Joint ci ratio: 5.201714e-02	ci left: 1.647791e-02	ci right 1.736090e-02	k: 5582	n:330000
Cons ci ratio: 1.221900e-01	ci left: 2.919066e-03	ci right 3.301863e-03	k: 1025	n:330000
KS ci ratio: 9.691444e-03	ci left: 3.298394e-01	ci right 3.330545e-01	k: 109377	n:330000
DIRC2   330000 perm   105 sec   (3154 perm/sec)   p_kst 3.314455e-01   p_cons 3.106061e-03   p_joint 1.691515e-02

Joint ci ratio: 4.792578e-02	ci left: 1.883438e-02	ci right 1.976208e-02	k: 6560	n:340000
Cons ci ratio: 1.203848e-01	ci left: 2.921622e-03	ci right 3.298691e-03	k: 1056	n:340000
KS ci ratio: 9.547067e-03	ci left: 3.299000e-01	ci right 3.330676e-01	k: 112704	n:340000
DIRC2   340000 perm   109 sec   (3115 perm/sec)   p_kst 3.314824e-01   p_cons 3.105882e-03   p_joint 1.929412e-02

Joint ci ratio: 4.791321e-02	ci left: 1.831589e-02	ci right 1.921781e-02	k: 6567	n:350000
Cons ci ratio: 1.183849e-01	ci left: 2.937934e-03	ci right 3.310368e-03	k: 1092	n:350000
KS ci ratio: 9.410168e-03	ci left: 3.299004e-01	ci right 3.330223e-01	k: 116011	n:350000
DIRC2   350000 perm   114 sec   (3078 perm/sec)   p_kst 3.314600e-01   p_cons 3.120000e-03   p_joint 1.876286e-02

Joint ci ratio: 4.515434e-02	ci left: 2.004233e-02	ci right 2.097096e-02	k: 7381	n:360000
Cons ci ratio: 1.172126e-01	ci left: 2.915633e-03	ci right 3.281327e-03	k: 1114	n:360000
KS ci ratio: 9.275738e-03	ci left: 3.300565e-01	ci right 3.331351e-01	k: 119374	n:360000
DIRC2   360000 perm   118 sec   (3040 perm/sec)   p_kst 3.315944e-01   p_cons 3.094444e-03   p_joint 2.050278e-02

Joint ci ratio: 4.489176e-02	ci left: 1.973841e-02	ci right 2.064750e-02	k: 7470	n:370000
Cons ci ratio: 1.159723e-01	ci left: 2.899804e-03	ci right 3.259400e-03	k: 1138	n:370000
KS ci ratio: 9.151148e-03	ci left: 3.299993e-01	ci right 3.330357e-01	k: 122661	n:370000
DIRC2   370000 perm   123 sec   (3001 perm/sec)   p_kst 3.315162e-01   p_cons 3.075676e-03   p_joint 2.018919e-02

Joint ci ratio: 4.428807e-02	ci left: 1.975244e-02	ci right 2.064963e-02	k: 7675	n:380000
Cons ci ratio: 1.145238e-01	ci left: 2.897609e-03	ci right 3.252141e-03	k: 1167	n:380000
KS ci ratio: 9.030268e-03	ci left: 3.300032e-01	ci right 3.329993e-01	k: 125970	n:380000
DIRC2   380000 perm   128 sec   (2966 perm/sec)   p_kst 3.315000e-01   p_cons 3.071053e-03   p_joint 2.019737e-02

Joint ci ratio: 4.501695e-02	ci left: 1.864228e-02	ci right 1.950334e-02	k: 7437	n:390000
Cons ci ratio: 1.135572e-01	ci left: 2.873128e-03	ci right 3.221500e-03	k: 1187	n:390000
KS ci ratio: 8.913745e-03	ci left: 3.300225e-01	ci right 3.329800e-01	k: 129285	n:390000
DIRC2   390000 perm   133 sec   (2935 perm/sec)   p_kst 3.315000e-01   p_cons 3.043590e-03   p_joint 1.906923e-02

Joint ci ratio: 4.862567e-02	ci left: 1.559859e-02	ci right 1.637844e-02	k: 6394	n:400000
Cons ci ratio: 1.120118e-01	ci left: 2.881473e-03	ci right 3.225788e-03	k: 1220	n:400000
KS ci ratio: 8.805046e-03	ci left: 3.298688e-01	ci right 3.327886e-01	k: 132531	n:400000
DIRC2   400000 perm   138 sec   (2901 perm/sec)   p_kst 3.313275e-01   p_cons 3.050000e-03   p_joint 1.598500e-02

Joint ci ratio: 4.230969e-02	ci left: 2.007325e-02	ci right 2.094330e-02	k: 8407	n:410000
Cons ci ratio: 1.106163e-01	ci left: 2.884698e-03	ci right 3.224824e-03	k: 1251	n:410000
KS ci ratio: 8.698359e-03	ci left: 3.298178e-01	ci right 3.327016e-01	k: 135816	n:410000
DIRC2   410000 perm   143 sec   (2869 perm/sec)   p_kst 3.312585e-01   p_cons 3.051220e-03   p_joint 2.050488e-02

Joint ci ratio: 4.199018e-02	ci left: 1.990154e-02	ci right 2.075747e-02	k: 8537	n:420000
Cons ci ratio: 1.094001e-01	ci left: 2.880847e-03	ci right 3.216543e-03	k: 1279	n:420000
KS ci ratio: 8.597538e-03	ci left: 3.296625e-01	ci right 3.325113e-01	k: 139056	n:420000
DIRC2   420000 perm   148 sec   (2838 perm/sec)   p_kst 3.310857e-01   p_cons 3.045238e-03   p_joint 2.032619e-02

Joint ci ratio: 4.378965e-02	ci left: 1.789457e-02	ci right 1.869799e-02	k: 7866	n:430000
Cons ci ratio: 1.083895e-01	ci left: 2.868143e-03	ci right 3.199075e-03	k: 1303	n:430000
KS ci ratio: 8.496973e-03	ci left: 3.296794e-01	ci right 3.324949e-01	k: 142367	n:430000
DIRC2   430000 perm   153 sec   (2808 perm/sec)   p_kst 3.310860e-01   p_cons 3.030233e-03   p_joint 1.829302e-02

Joint ci ratio: 4.118857e-02	ci left: 1.975484e-02	ci right 2.058786e-02	k: 8874	n:440000
Cons ci ratio: 1.072849e-01	ci left: 2.862666e-03	ci right 3.189387e-03	k: 1330	n:440000
KS ci ratio: 8.404212e-03	ci left: 3.294665e-01	ci right 3.322493e-01	k: 145577	n:440000
DIRC2   440000 perm   158 sec   (2777 perm/sec)   p_kst 3.308568e-01   p_cons 3.022727e-03   p_joint 2.016818e-02

Joint ci ratio: 4.125255e-02	ci left: 1.926516e-02	ci right 2.007882e-02	k: 8851	n:450000
Cons ci ratio: 1.059399e-01	ci left: 2.872593e-03	ci right 3.196080e-03	k: 1364	n:450000
KS ci ratio: 8.309414e-03	ci left: 3.295296e-01	ci right 3.322814e-01	k: 148907	n:450000
DIRC2   450000 perm   164 sec   (2748 perm/sec)   p_kst 3.309044e-01   p_cons 3.031111e-03   p_joint 1.966889e-02

Joint ci ratio: 4.083556e-02	ci left: 1.923794e-02	ci right 2.004204e-02	k: 9033	n:460000
Cons ci ratio: 1.050214e-01	ci left: 2.860942e-03	ci right 3.180151e-03	k: 1388	n:460000
KS ci ratio: 8.217431e-03	ci left: 3.296075e-01	ci right 3.323294e-01	k: 152245	n:460000
DIRC2   460000 perm   169 sec   (2719 perm/sec)   p_kst 3.309674e-01   p_cons 3.017391e-03   p_joint 1.963696e-02

Joint ci ratio: 4.513456e-02	ci left: 1.543910e-02	ci right 1.615412e-02	k: 7423	n:470000
Cons ci ratio: 1.036492e-01	ci left: 2.876741e-03	ci right 3.193264e-03	k: 1425	n:470000
KS ci ratio: 8.128241e-03	ci left: 3.296929e-01	ci right 3.323858e-01	k: 155588	n:470000
DIRC2   470000 perm   175 sec   (2690 perm/sec)   p_kst 3.310383e-01   p_cons 3.031915e-03   p_joint 1.579362e-02

Joint ci ratio: 3.998829e-02	ci left: 1.923446e-02	ci right 2.002135e-02	k: 9420	n:480000
Cons ci ratio: 1.027530e-01	ci left: 2.867547e-03	ci right 3.180166e-03	k: 1450	n:480000
KS ci ratio: 8.042687e-03	ci left: 3.297312e-01	ci right 3.323959e-01	k: 158910	n:480000
DIRC2   480000 perm   180 sec   (2663 perm/sec)   p_kst 3.310625e-01   p_cons 3.020833e-03   p_joint 1.962500e-02

Joint ci ratio: 3.834626e-02	ci left: 2.048107e-02	ci right 2.128380e-02	k: 10231	n:490000
Cons ci ratio: 1.017759e-01	ci left: 2.864707e-03	ci right 3.173869e-03	k: 1478	n:490000
KS ci ratio: 7.962237e-03	ci left: 3.296314e-01	ci right 3.322685e-01	k: 162165	n:490000
DIRC2   490000 perm   186 sec   (2635 perm/sec)   p_kst 3.309490e-01   p_cons 3.016327e-03   p_joint 2.087959e-02

Joint ci ratio: 4.568704e-02	ci left: 1.417838e-02	ci right 1.484326e-02	k: 7254	n:500000
Cons ci ratio: 1.009270e-01	ci left: 2.856145e-03	ci right 3.161659e-03	k: 1503	n:500000
KS ci ratio: 7.885507e-03	ci left: 3.294599e-01	ci right 3.320701e-01	k: 165382	n:500000
DIRC2   500000 perm   192 sec   (2608 perm/sec)   p_kst 3.307640e-01   p_cons 3.006000e-03   p_joint 1.450800e-02

Joint ci ratio: 3.756818e-02	ci left: 2.050914e-02	ci right 2.129631e-02	k: 10659	n:510000
Cons ci ratio: 1.000334e-01	ci left: 2.851752e-03	ci right 3.153937e-03	k: 1530	n:510000
KS ci ratio: 7.809914e-03	ci left: 3.293539e-01	ci right 3.319382e-01	k: 168629	n:510000
DIRC2   510000 perm   198 sec   (2581 perm/sec)   p_kst 3.306451e-01   p_cons 3.000000e-03   p_joint 2.090000e-02

Joint ci ratio: 3.581470e-02	ci left: 2.211577e-02	ci right 2.292418e-02	k: 11709	n:520000
Cons ci ratio: 9.929108e-02	ci left: 2.840038e-03	ci right 3.138619e-03	k: 1553	n:520000
KS ci ratio: 7.733159e-03	ci left: 3.294405e-01	ci right 3.319999e-01	k: 171974	n:520000
DIRC2   520000 perm   204 sec   (2554 perm/sec)   p_kst 3.307192e-01   p_cons 2.986538e-03   p_joint 2.251731e-02

Outputting figure to mutsig2_images.part000000000050/DIRC2.4_1473_520000_0.33072_0.0029865_0.022517.png
                gene_name: DIRC2
               theta_stop: 0.099 
                    nperm: 520000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0030 
      ci_cons_bounds_left: 0.0028 
     ci_cons_bounds_right: 0.0031 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 63 percent done.
DISP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
KS ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
DISP2   10000 perm   2 sec   (5108 perm/sec)   p_kst 3.750000e-02   p_cons 7.609000e-01   p_joint 1.802000e-01

Joint ci ratio: 6.865601e-02	ci left: 1.353172e-01	ci right 1.449877e-01	k: 2802	n:20000
Cons ci ratio: 1.665629e-02	ci left: 7.285225e-01	ci right 7.408092e-01	k: 14694	n:20000
KS ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
DISP2   20000 perm   4 sec   (4566 perm/sec)   p_kst 3.715000e-02   p_cons 7.347000e-01   p_joint 1.401000e-01

Joint ci ratio: 5.481664e-02	ci left: 1.416266e-01	ci right 1.496421e-01	k: 4368	n:30000
Cons ci ratio: 1.358359e-02	ci left: 7.301343e-01	ci right 7.401534e-01	k: 22055	n:30000
KS ci ratio: 1.157852e-01	ci left: 3.466545e-02	ci right 3.895819e-02	k: 1103	n:30000
DISP2   30000 perm   7 sec   (4351 perm/sec)   p_kst 3.676667e-02   p_cons 7.351667e-01   p_joint 1.456000e-01

Joint ci ratio: 6.243782e-02	ci left: 8.689240e-02	ci right 9.251733e-02	k: 3587	n:40000
Cons ci ratio: 1.144426e-02	ci left: 7.414525e-01	ci right 7.500118e-01	k: 29830	n:40000
KS ci ratio: 1.011686e-01	ci left: 3.434197e-02	ci right 3.802576e-02	k: 1446	n:40000
DISP2   40000 perm   9 sec   (4211 perm/sec)   p_kst 3.615000e-02   p_cons 7.457500e-01   p_joint 8.967500e-02

Joint ci ratio: 5.214690e-02	ci left: 9.888595e-02	ci right 1.042004e-01	k: 5076	n:50000
Cons ci ratio: 1.027845e-02	ci left: 7.403314e-01	ci right 7.480002e-01	k: 37209	n:50000
KS ci ratio: 9.103132e-02	ci left: 3.412981e-02	ci right 3.740437e-02	k: 1787	n:50000
DISP2   50000 perm   12 sec   (4109 perm/sec)   p_kst 3.574000e-02   p_cons 7.441800e-01   p_joint 1.015200e-01

Outputting figure to mutsig2_images.part000000000050/DISP2.4_4238_50000_0.03574_0.74418_0.10152.png
                gene_name: DISP2
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.10 

Current progress: 65 percent done.
DIXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
Cons ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
KS ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
DIXDC1   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.596000e-01   p_cons 3.395000e-01   p_joint 2.104000e-01

Outputting figure to mutsig2_images.part000000000050/DIXDC1.4_2158_10000_0.1596_0.3395_0.2104.png
                gene_name: DIXDC1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 67 percent done.
DKK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
DKK2   10000 perm   2 sec   (6025 perm/sec)   p_kst 7.558000e-01   p_cons 7.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DKK2.4_796_10000_0.7558_0.7501_1.png
                gene_name: DKK2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
DHRS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
Cons ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
DHRS9   10000 perm   2 sec   (6124 perm/sec)   p_kst 3.330000e-01   p_cons 3.237000e-01   p_joint 4.123000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS9.3_976_10000_0.333_0.3237_0.4123.png
                gene_name: DHRS9
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 70 percent done.
DHX29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
Cons ci ratio: 1.758489e-02	ci left: 8.250345e-01	ci right 8.397713e-01	k: 8325	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
DHX29   10000 perm   2 sec   (4854 perm/sec)   p_kst 7.790000e-02   p_cons 8.325000e-01   p_joint 1.746000e-01

Joint ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
Cons ci ratio: 1.202819e-02	ci left: 8.364146e-01	ci right 8.465859e-01	k: 16831	n:20000
KS ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
DHX29   20000 perm   5 sec   (4371 perm/sec)   p_kst 7.515000e-02   p_cons 8.415500e-01   p_joint 8.890000e-02

Outputting figure to mutsig2_images.part000000000050/DHX29.3_4218_20000_0.07515_0.84155_0.0889.png
                gene_name: DHX29
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 71 percent done.
DHX36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
DHX36   10000 perm   2 sec   (5296 perm/sec)   p_kst 2.185000e-01   p_cons 5.680000e-02   p_joint 2.464000e-01

Joint ci ratio: 5.955478e-02	ci left: 1.727208e-01	ci right 1.833729e-01	k: 3560	n:20000
Cons ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
KS ci ratio: 5.177713e-02	ci left: 2.169495e-01	ci right 2.285313e-01	k: 4454	n:20000
DHX36   20000 perm   4 sec   (4775 perm/sec)   p_kst 2.227000e-01   p_cons 5.855000e-02   p_joint 1.780000e-01

Joint ci ratio: 6.059132e-02	ci left: 1.187113e-01	ci right 1.261620e-01	k: 3672	n:30000
Cons ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
KS ci ratio: 4.248257e-02	ci left: 2.163484e-01	ci right 2.257723e-01	k: 6631	n:30000
DHX36   30000 perm   7 sec   (4575 perm/sec)   p_kst 2.210333e-01   p_cons 5.860000e-02   p_joint 1.224000e-01

Outputting figure to mutsig2_images.part000000000050/DHX36.3_3127_30000_0.22103_0.0586_0.1224.png
                gene_name: DHX36
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 73 percent done.
DIRAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
DIRAS2   10000 perm   1 sec   (6703 perm/sec)   p_kst 4.939000e-01   p_cons 2.120000e-02   p_joint 3.020000e-02

Joint ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
Cons ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
KS ci ratio: 2.827361e-02	ci left: 4.830987e-01	ci right 4.970042e-01	k: 9801	n:20000
DIRAS2   20000 perm   3 sec   (5899 perm/sec)   p_kst 4.900500e-01   p_cons 2.050000e-02   p_joint 7.350000e-02

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 7.711554e-02	ci left: 7.623382e-02	ci right 8.238128e-02	k: 2378	n:30000
KS ci ratio: 2.326909e-02	ci left: 4.804292e-01	ci right 4.917735e-01	k: 14583	n:30000
DIRAS2   30000 perm   5 sec   (5539 perm/sec)   p_kst 4.861000e-01   p_cons 7.926667e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIRAS2.3_604_30000_0.4861_0.079267_1.png
                gene_name: DIRAS2
               theta_stop: 0.077 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.082 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
DIRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
KS ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
DIRC1   10000 perm   1 sec   (6884 perm/sec)   p_kst 5.413000e-01   p_cons 6.314000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIRC1.3_319_10000_0.5413_0.6314_1.png
                gene_name: DIRC1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
DIS3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
DIS3L   10000 perm   2 sec   (5305 perm/sec)   p_kst 1.900000e-02   p_cons 7.111000e-01   p_joint 1.175000e-01

Joint ci ratio: 1.103976e-01	ci left: 5.601725e-02	ci right 6.261160e-02	k: 1185	n:20000
Cons ci ratio: 1.768661e-02	ci left: 7.043102e-01	ci right 7.169285e-01	k: 14213	n:20000
KS ci ratio: 2.073850e-01	ci left: 1.572813e-02	ci right 1.941403e-02	k: 350	n:20000
DIS3L   20000 perm   4 sec   (4742 perm/sec)   p_kst 1.750000e-02   p_cons 7.106500e-01   p_joint 5.925000e-02

Joint ci ratio: 7.889428e-02	ci left: 7.302581e-02	ci right 7.905660e-02	k: 2280	n:30000
Cons ci ratio: 1.446634e-02	ci left: 7.047615e-01	ci right 7.150645e-01	k: 21298	n:30000
KS ci ratio: 1.607620e-01	ci left: 1.786925e-02	ci right 2.102478e-02	k: 582	n:30000
DIS3L   30000 perm   7 sec   (4526 perm/sec)   p_kst 1.940000e-02   p_cons 7.099333e-01   p_joint 7.600000e-02

Joint ci ratio: 8.757475e-02	ci left: 4.560728e-02	ci right 4.980870e-02	k: 1907	n:40000
Cons ci ratio: 1.256351e-02	ci left: 7.042951e-01	ci right 7.132245e-01	k: 28351	n:40000
KS ci ratio: 1.406458e-01	ci left: 1.770872e-02	ci right 2.041174e-02	k: 761	n:40000
DIS3L   40000 perm   9 sec   (4414 perm/sec)   p_kst 1.902500e-02   p_cons 7.087750e-01   p_joint 4.767500e-02

Joint ci ratio: 5.534606e-02	ci left: 8.865083e-02	ci right 9.371675e-02	k: 4558	n:50000
Cons ci ratio: 1.104404e-02	ci left: 7.119045e-01	ci right 7.198304e-01	k: 35794	n:50000
KS ci ratio: 1.246356e-01	ci left: 1.818962e-02	ci right 2.062663e-02	k: 969	n:50000
DIS3L   50000 perm   12 sec   (4309 perm/sec)   p_kst 1.938000e-02   p_cons 7.158800e-01   p_joint 9.116000e-02

Joint ci ratio: 7.882805e-02	ci left: 3.802083e-02	ci right 4.115724e-02	k: 2374	n:60000
Cons ci ratio: 1.008543e-02	ci left: 7.121054e-01	ci right 7.193404e-01	k: 42944	n:60000
KS ci ratio: 1.160859e-01	ci left: 1.756631e-02	ci right 1.974726e-02	k: 1118	n:60000
DIS3L   60000 perm   14 sec   (4206 perm/sec)   p_kst 1.863333e-02   p_cons 7.157333e-01   p_joint 3.956667e-02

Joint ci ratio: 6.764929e-02	ci left: 4.422090e-02	ci right 4.733118e-02	k: 3203	n:70000
Cons ci ratio: 9.543936e-03	ci left: 7.033547e-01	ci right 7.101139e-01	k: 49472	n:70000
KS ci ratio: 1.077062e-01	ci left: 1.757025e-02	ci right 1.958422e-02	k: 1299	n:70000
DIS3L   70000 perm   17 sec   (4125 perm/sec)   p_kst 1.855714e-02   p_cons 7.067429e-01   p_joint 4.575714e-02

Joint ci ratio: 5.963805e-02	ci left: 4.970739e-02	ci right 5.277526e-02	k: 4098	n:80000
Cons ci ratio: 8.938966e-03	ci left: 7.030424e-01	ci right 7.093676e-01	k: 56497	n:80000
KS ci ratio: 1.003965e-01	ci left: 1.776035e-02	ci right 1.964979e-02	k: 1495	n:80000
DIS3L   80000 perm   20 sec   (4052 perm/sec)   p_kst 1.868750e-02   p_cons 7.062125e-01   p_joint 5.122500e-02

Joint ci ratio: 5.638457e-02	ci left: 4.952779e-02	ci right 5.241235e-02	k: 4586	n:90000
Cons ci ratio: 8.431834e-03	ci left: 7.030225e-01	ci right 7.089864e-01	k: 63541	n:90000
KS ci ratio: 9.422777e-02	ci left: 1.797692e-02	ci right 1.976539e-02	k: 1697	n:90000
DIS3L   90000 perm   23 sec   (3978 perm/sec)   p_kst 1.885556e-02   p_cons 7.060111e-01   p_joint 5.095556e-02

Outputting figure to mutsig2_images.part000000000050/DIS3L.3_3233_90000_0.018856_0.70601_0.050956.png
                gene_name: DIS3L
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.052 

Current progress: 78 percent done.
DLG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
DLG4   10000 perm   2 sec   (5854 perm/sec)   p_kst 4.551000e-01   p_cons 1.248000e-01   p_joint 2.765000e-01

Joint ci ratio: 5.198736e-02	ci left: 2.155626e-01	ci right 2.271185e-01	k: 4426	n:20000
Cons ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
KS ci ratio: 3.112571e-02	ci left: 4.353507e-01	ci right 4.491661e-01	k: 8845	n:20000
DLG4   20000 perm   4 sec   (5228 perm/sec)   p_kst 4.422500e-01   p_cons 1.159000e-01   p_joint 2.213000e-01

Outputting figure to mutsig2_images.part000000000050/DLG4.3_2426_20000_0.44225_0.1159_0.2213.png
                gene_name: DLG4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 79 percent done.
DLGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494067e-02	ci left: 8.665194e-01	ci right 8.796624e-01	k: 8732	n:10000
Cons ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
DLGAP5   10000 perm   2 sec   (5520 perm/sec)   p_kst 4.920000e-01   p_cons 9.535000e-01   p_joint 8.732000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP5.3_2708_10000_0.492_0.9535_0.8732.png
                gene_name: DLGAP5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 81 percent done.
DLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
Cons ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
KS ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
DLL3   10000 perm   2 sec   (5908 perm/sec)   p_kst 7.013000e-01   p_cons 7.064000e-01   p_joint 8.007000e-01

Outputting figure to mutsig2_images.part000000000050/DLL3.3_1899_10000_0.7013_0.7064_0.8007.png
                gene_name: DLL3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 83 percent done.
DLX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
DLX2   10000 perm   2 sec   (6198 perm/sec)   p_kst 9.000000e-02   p_cons 2.539000e-01   p_joint 1.109000e-01

Joint ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
Cons ci ratio: 4.728455e-02	ci left: 2.496648e-01	ci right 2.618063e-01	k: 5114	n:20000
KS ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
DLX2   20000 perm   4 sec   (5618 perm/sec)   p_kst 9.400000e-02   p_cons 2.557000e-01   p_joint 1.453500e-01

Outputting figure to mutsig2_images.part000000000050/DLX2.3_999_20000_0.094_0.2557_0.14535.png
                gene_name: DLX2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 84 percent done.
DHRS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
DHRS11   10000 perm   1 sec   (7128 perm/sec)   p_kst 6.025000e-01   p_cons 2.686000e-01   p_joint 6.721000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS11.2_811_10000_0.6025_0.2686_0.6721.png
                gene_name: DHRS11
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 86 percent done.
DHRS7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
Cons ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
KS ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
DHRS7B   10000 perm   1 sec   (6742 perm/sec)   p_kst 8.264000e-01   p_cons 1.237000e-01   p_joint 7.177000e-01

Joint ci ratio: 1.731523e-02	ci left: 7.130160e-01	ci right 7.255202e-01	k: 14386	n:20000
Cons ci ratio: 7.397914e-02	ci left: 1.185274e-01	ci right 1.276825e-01	k: 2461	n:20000
KS ci ratio: 1.266493e-02	ci left: 8.219890e-01	ci right 8.325157e-01	k: 16546	n:20000
DHRS7B   20000 perm   3 sec   (5942 perm/sec)   p_kst 8.273000e-01   p_cons 1.230500e-01   p_joint 7.193000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS7B.2_1006_20000_0.8273_0.12305_0.7193.png
                gene_name: DHRS7B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 87 percent done.
DHRS7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DHRS7C   10000 perm   1 sec   (7058 perm/sec)   p_kst 1   p_cons 6.226000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHRS7C.2_960_10000_1_0.6226_1.png
                gene_name: DHRS7C
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
DIRAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
Cons ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
DIRAS3   10000 perm   1 sec   (7224 perm/sec)   p_kst 1.204000e-01   p_cons 5.401000e-01   p_joint 2.416000e-01

Joint ci ratio: 5.748321e-02	ci left: 1.831990e-01	ci right 1.940916e-01	k: 3772	n:20000
Cons ci ratio: 2.565355e-02	ci left: 5.316610e-01	ci right 5.455278e-01	k: 10772	n:20000
KS ci ratio: 7.543644e-02	ci left: 1.144449e-01	ci right 1.234662e-01	k: 2378	n:20000
DIRAS3   20000 perm   3 sec   (6286 perm/sec)   p_kst 1.189000e-01   p_cons 5.386000e-01   p_joint 1.886000e-01

Outputting figure to mutsig2_images.part000000000050/DIRAS3.2_694_20000_0.1189_0.5386_0.1886.png
                gene_name: DIRAS3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 90 percent done.
DKC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
KS ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
DKC1   10000 perm   2 sec   (6389 perm/sec)   p_kst 4.954000e-01   p_cons 4.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DKC1.2_1605_10000_0.4954_0.4084_1.png
                gene_name: DKC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
DKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
DKK1   10000 perm   1 sec   (6900 perm/sec)   p_kst 1.275000e-01   p_cons 6.814000e-01   p_joint 1.957000e-01

Joint ci ratio: 6.199459e-02	ci left: 1.614102e-01	ci right 1.717869e-01	k: 3331	n:20000
Cons ci ratio: 1.918693e-02	ci left: 6.695140e-01	ci right 6.825348e-01	k: 13521	n:20000
KS ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
DKK1   20000 perm   3 sec   (6019 perm/sec)   p_kst 1.255500e-01   p_cons 6.760500e-01   p_joint 1.665500e-01

Outputting figure to mutsig2_images.part000000000050/DKK1.2_817_20000_0.12555_0.67605_0.16655.png
                gene_name: DKK1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 94 percent done.
DKK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
Cons ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
KS ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
DKK4   10000 perm   1 sec   (6849 perm/sec)   p_kst 5.191000e-01   p_cons 7.425000e-01   p_joint 6.773000e-01

Outputting figure to mutsig2_images.part000000000050/DKK4.2_691_10000_0.5191_0.7425_0.6773.png
                gene_name: DKK4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 95 percent done.
DLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.961964e-03	ci left: 9.964311e-01	ci right 9.984617e-01	k: 9976	n:10000
KS ci ratio: 9.159885e-03	ci left: 9.437779e-01	ci right 9.525587e-01	k: 9483	n:10000
DLG1   10000 perm   2 sec   (5806 perm/sec)   p_kst 9.483000e-01   p_cons 9.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLG1.2_2919_10000_0.9483_0.9976_1.png
                gene_name: DLG1
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
DLG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
KS ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
DLG3   10000 perm   2 sec   (5828 perm/sec)   p_kst 8.690000e-01   p_cons 2.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLG3.2_2818_10000_0.869_0.2242_1.png
                gene_name: DLG3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
DLST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
Cons ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
DLST   10000 perm   2 sec   (6521 perm/sec)   p_kst 9.000000e-04   p_cons 5.207000e-01   p_joint 1.200000e-03

Joint ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
Cons ci ratio: 2.720846e-02	ci left: 5.022957e-01	ci right 5.162016e-01	k: 10185	n:20000
KS ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
DLST   20000 perm   3 sec   (5786 perm/sec)   p_kst 8.500000e-04   p_cons 5.092500e-01   p_joint 1.250000e-03

Joint ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
Cons ci ratio: 2.223023e-02	ci left: 5.032590e-01	ci right 5.146059e-01	k: 15268	n:30000
KS ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
DLST   30000 perm   5 sec   (5471 perm/sec)   p_kst 9.000000e-04   p_cons 5.089333e-01   p_joint 9.000000e-04

Joint ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
Cons ci ratio: 1.918521e-02	ci left: 5.057631e-01	ci right 5.155854e-01	k: 20427	n:40000
KS ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
DLST   40000 perm   8 sec   (5269 perm/sec)   p_kst 9.000000e-04   p_cons 5.106750e-01   p_joint 9.000000e-04

Joint ci ratio: 5.777008e-01	ci left: 6.565396e-04	ci right 1.204088e-03	k: 45	n:50000
Cons ci ratio: 1.717622e-02	ci left: 5.058078e-01	ci right 5.145910e-01	k: 25510	n:50000
KS ci ratio: 5.777008e-01	ci left: 6.565396e-04	ci right 1.204088e-03	k: 45	n:50000
DLST   50000 perm   10 sec   (5101 perm/sec)   p_kst 9.000000e-04   p_cons 5.102000e-01   p_joint 9.000000e-04

Joint ci ratio: 5.283260e-01	ci left: 6.761778e-04	ci right 1.174144e-03	k: 54	n:60000
Cons ci ratio: 1.569963e-02	ci left: 5.055579e-01	ci right 5.135745e-01	k: 30574	n:60000
KS ci ratio: 5.283260e-01	ci left: 6.761778e-04	ci right 1.174144e-03	k: 54	n:60000
DLST   60000 perm   12 sec   (4968 perm/sec)   p_kst 9.000000e-04   p_cons 5.095667e-01   p_joint 9.000000e-04

Joint ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
Cons ci ratio: 1.453577e-02	ci left: 5.058321e-01	ci right 5.132528e-01	k: 35668	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
DLST   70000 perm   14 sec   (4839 perm/sec)   p_kst 8.285714e-04   p_cons 5.095429e-01   p_joint 8.285714e-04

Joint ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
Cons ci ratio: 1.355641e-02	ci left: 5.075670e-01	ci right 5.145072e-01	k: 40883	n:80000
KS ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
DLST   80000 perm   17 sec   (4727 perm/sec)   p_kst 8.375000e-04   p_cons 5.110375e-01   p_joint 8.375000e-04

Joint ci ratio: 4.408384e-01	ci left: 6.851225e-04	ci right 1.081523e-03	k: 78	n:90000
Cons ci ratio: 1.279573e-02	ci left: 5.071949e-01	ci right 5.137377e-01	k: 45942	n:90000
KS ci ratio: 4.408384e-01	ci left: 6.851225e-04	ci right 1.081523e-03	k: 78	n:90000
DLST   90000 perm   19 sec   (4628 perm/sec)   p_kst 8.666667e-04   p_cons 5.104667e-01   p_joint 8.666667e-04

Joint ci ratio: 4.176874e-01	ci left: 6.968912e-04	ci right 1.073033e-03	k: 87	n:100000
Cons ci ratio: 1.212739e-02	ci left: 5.078465e-01	ci right 5.140529e-01	k: 51095	n:100000
KS ci ratio: 4.176874e-01	ci left: 6.968912e-04	ci right 1.073033e-03	k: 87	n:100000
DLST   100000 perm   22 sec   (4536 perm/sec)   p_kst 8.700000e-04   p_cons 5.109500e-01   p_joint 8.700000e-04

Joint ci ratio: 3.958016e-01	ci left: 7.151515e-04	ci right 1.075639e-03	k: 97	n:110000
Cons ci ratio: 1.154883e-02	ci left: 5.086049e-01	ci right 5.145218e-01	k: 56272	n:110000
KS ci ratio: 3.958016e-01	ci left: 7.151515e-04	ci right 1.075639e-03	k: 97	n:110000
DLST   110000 perm   25 sec   (4432 perm/sec)   p_kst 8.818182e-04   p_cons 5.115636e-01   p_joint 8.818182e-04

Joint ci ratio: 3.805743e-01	ci left: 7.157174e-04	ci right 1.059143e-03	k: 105	n:120000
Cons ci ratio: 1.105619e-02	ci left: 5.087757e-01	ci right 5.144404e-01	k: 61393	n:120000
KS ci ratio: 3.805743e-01	ci left: 7.157174e-04	ci right 1.059143e-03	k: 105	n:120000
DLST   120000 perm   28 sec   (4347 perm/sec)   p_kst 8.750000e-04   p_cons 5.116083e-01   p_joint 8.750000e-04

Joint ci ratio: 3.607001e-01	ci left: 7.443796e-04	ci right 1.078530e-03	k: 117	n:130000
Cons ci ratio: 1.064227e-02	ci left: 5.079555e-01	ci right 5.133979e-01	k: 66388	n:130000
KS ci ratio: 3.607001e-01	ci left: 7.443796e-04	ci right 1.078530e-03	k: 117	n:130000
DLST   130000 perm   30 sec   (4266 perm/sec)   p_kst 9.000000e-04   p_cons 5.106769e-01   p_joint 9.000000e-04

Joint ci ratio: 3.436459e-01	ci left: 7.693474e-04	ci right 1.094752e-03	k: 129	n:140000
Cons ci ratio: 1.025952e-02	ci left: 5.078420e-01	ci right 5.130862e-01	k: 71465	n:140000
KS ci ratio: 3.436459e-01	ci left: 7.693474e-04	ci right 1.094752e-03	k: 129	n:140000
DLST   140000 perm   33 sec   (4189 perm/sec)   p_kst 9.214286e-04   p_cons 5.104643e-01   p_joint 9.214286e-04

Joint ci ratio: 3.372269e-01	ci left: 7.485401e-04	ci right 1.057943e-03	k: 134	n:150000
Cons ci ratio: 9.917681e-03	ci left: 5.076267e-01	ci right 5.126929e-01	k: 76524	n:150000
KS ci ratio: 3.372269e-01	ci left: 7.485401e-04	ci right 1.057943e-03	k: 134	n:150000
DLST   150000 perm   36 sec   (4118 perm/sec)   p_kst 8.933333e-04   p_cons 5.101600e-01   p_joint 8.933333e-04

Joint ci ratio: 3.347637e-01	ci left: 7.131995e-04	ci right 1.005377e-03	k: 136	n:160000
Cons ci ratio: 9.604873e-03	ci left: 5.075973e-01	ci right 5.125024e-01	k: 81608	n:160000
KS ci ratio: 3.347637e-01	ci left: 7.131995e-04	ci right 1.005377e-03	k: 136	n:160000
DLST   160000 perm   40 sec   (4050 perm/sec)   p_kst 8.500000e-04   p_cons 5.100500e-01   p_joint 8.500000e-04

Joint ci ratio: 3.265273e-01	ci left: 7.090052e-04	ci right 9.908196e-04	k: 143	n:170000
Cons ci ratio: 9.307523e-03	ci left: 5.082383e-01	ci right 5.129967e-01	k: 86805	n:170000
KS ci ratio: 3.265273e-01	ci left: 7.090052e-04	ci right 9.908196e-04	k: 143	n:170000
DLST   170000 perm   43 sec   (3986 perm/sec)   p_kst 8.411765e-04   p_cons 5.106176e-01   p_joint 8.411765e-04

Joint ci ratio: 3.178188e-01	ci left: 7.104672e-04	ci right 9.838000e-04	k: 151	n:180000
Cons ci ratio: 9.041489e-03	ci left: 5.085155e-01	ci right 5.131397e-01	k: 91949	n:180000
KS ci ratio: 3.178188e-01	ci left: 7.104672e-04	ci right 9.838000e-04	k: 151	n:180000
DLST   180000 perm   46 sec   (3928 perm/sec)   p_kst 8.388889e-04   p_cons 5.108278e-01   p_joint 8.388889e-04

Joint ci ratio: 3.078522e-01	ci left: 7.215757e-04	ci right 9.887696e-04	k: 161	n:190000
Cons ci ratio: 8.802222e-03	ci left: 5.084706e-01	ci right 5.129712e-01	k: 97037	n:190000
KS ci ratio: 3.078522e-01	ci left: 7.215757e-04	ci right 9.887696e-04	k: 161	n:190000
DLST   190000 perm   49 sec   (3871 perm/sec)   p_kst 8.473684e-04   p_cons 5.107211e-01   p_joint 8.473684e-04

Joint ci ratio: 3.032113e-01	ci left: 7.085798e-04	ci right 9.662430e-04	k: 166	n:200000
Cons ci ratio: 8.570616e-03	ci left: 5.090366e-01	ci right 5.134231e-01	k: 102246	n:200000
KS ci ratio: 3.032113e-01	ci left: 7.085798e-04	ci right 9.662430e-04	k: 166	n:200000
DLST   200000 perm   52 sec   (3816 perm/sec)   p_kst 8.300000e-04   p_cons 5.112300e-01   p_joint 8.300000e-04

Joint ci ratio: 2.979086e-01	ci left: 7.012547e-04	ci right 9.509515e-04	k: 172	n:210000
Cons ci ratio: 8.364251e-03	ci left: 5.090786e-01	ci right 5.133592e-01	k: 107356	n:210000
KS ci ratio: 2.979086e-01	ci left: 7.012547e-04	ci right 9.509515e-04	k: 172	n:210000
DLST   210000 perm   56 sec   (3762 perm/sec)   p_kst 8.190476e-04   p_cons 5.112190e-01   p_joint 8.190476e-04

Joint ci ratio: 2.928747e-01	ci left: 6.946312e-04	ci right 9.370149e-04	k: 178	n:220000
Cons ci ratio: 8.168467e-03	ci left: 5.093406e-01	ci right 5.135227e-01	k: 112515	n:220000
KS ci ratio: 2.928747e-01	ci left: 6.946312e-04	ci right 9.370149e-04	k: 178	n:220000
DLST   220000 perm   59 sec   (3709 perm/sec)   p_kst 8.090909e-04   p_cons 5.114318e-01   p_joint 8.090909e-04

Joint ci ratio: 2.888700e-01	ci left: 6.845825e-04	ci right 9.195967e-04	k: 183	n:230000
Cons ci ratio: 7.988387e-03	ci left: 5.094200e-01	ci right 5.135101e-01	k: 117637	n:230000
KS ci ratio: 2.888700e-01	ci left: 6.845825e-04	ci right 9.195967e-04	k: 183	n:230000
DLST   230000 perm   63 sec   (3656 perm/sec)   p_kst 7.956522e-04   p_cons 5.114652e-01   p_joint 7.956522e-04

Joint ci ratio: 2.827879e-01	ci left: 6.870026e-04	ci right 9.169963e-04	k: 191	n:240000
Cons ci ratio: 7.816195e-03	ci left: 5.097188e-01	ci right 5.137226e-01	k: 122813	n:240000
KS ci ratio: 2.827879e-01	ci left: 6.870026e-04	ci right 9.169963e-04	k: 191	n:240000
DLST   240000 perm   67 sec   (3606 perm/sec)   p_kst 7.958333e-04   p_cons 5.117208e-01   p_joint 7.958333e-04

Joint ci ratio: 2.784714e-01	ci left: 6.818334e-04	ci right 9.060015e-04	k: 197	n:250000
Cons ci ratio: 7.655593e-03	ci left: 5.099345e-01	ci right 5.138573e-01	k: 127974	n:250000
KS ci ratio: 2.784714e-01	ci left: 6.818334e-04	ci right 9.060015e-04	k: 197	n:250000
DLST   250000 perm   70 sec   (3557 perm/sec)   p_kst 7.880000e-04   p_cons 5.118960e-01   p_joint 7.880000e-04

Joint ci ratio: 2.763881e-01	ci left: 6.663441e-04	ci right 8.834956e-04	k: 200	n:260000
Cons ci ratio: 7.507504e-03	ci left: 5.099343e-01	ci right 5.137808e-01	k: 133083	n:260000
KS ci ratio: 2.763881e-01	ci left: 6.663441e-04	ci right 8.834956e-04	k: 200	n:260000
DLST   260000 perm   74 sec   (3508 perm/sec)   p_kst 7.692308e-04   p_cons 5.118577e-01   p_joint 7.692308e-04

Joint ci ratio: 2.730146e-01	ci left: 6.589074e-04	ci right 8.705650e-04	k: 205	n:270000
Cons ci ratio: 7.367471e-03	ci left: 5.099496e-01	ci right 5.137242e-01	k: 138196	n:270000
KS ci ratio: 2.730146e-01	ci left: 6.589074e-04	ci right 8.705650e-04	k: 205	n:270000
DLST   270000 perm   78 sec   (3458 perm/sec)   p_kst 7.592593e-04   p_cons 5.118370e-01   p_joint 7.592593e-04

Joint ci ratio: 2.684913e-01	ci left: 6.586781e-04	ci right 8.661663e-04	k: 212	n:280000
Cons ci ratio: 7.238819e-03	ci left: 5.097002e-01	ci right 5.134067e-01	k: 143235	n:280000
KS ci ratio: 2.684913e-01	ci left: 6.586781e-04	ci right 8.661663e-04	k: 212	n:280000
DLST   280000 perm   82 sec   (3410 perm/sec)   p_kst 7.571429e-04   p_cons 5.115536e-01   p_joint 7.571429e-04

Joint ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
Cons ci ratio: 7.111815e-03	ci left: 5.098099e-01	ci right 5.134519e-01	k: 148373	n:290000
KS ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
DLST   290000 perm   86 sec   (3365 perm/sec)   p_kst 7.655172e-04   p_cons 5.116310e-01   p_joint 7.655172e-04

Joint ci ratio: 2.589416e-01	ci left: 6.645754e-04	ci right 8.652716e-04	k: 228	n:300000
Cons ci ratio: 6.991923e-03	ci left: 5.098662e-01	ci right 5.134469e-01	k: 153497	n:300000
KS ci ratio: 2.589416e-01	ci left: 6.645754e-04	ci right 8.652716e-04	k: 228	n:300000
DLST   300000 perm   90 sec   (3321 perm/sec)   p_kst 7.600000e-04   p_cons 5.116567e-01   p_joint 7.600000e-04

Joint ci ratio: 2.561613e-01	ci left: 6.582251e-04	ci right 8.545280e-04	k: 233	n:310000
Cons ci ratio: 6.878208e-03	ci left: 5.098967e-01	ci right 5.134192e-01	k: 158614	n:310000
KS ci ratio: 2.561613e-01	ci left: 6.582251e-04	ci right 8.545280e-04	k: 233	n:310000
DLST   310000 perm   95 sec   (3277 perm/sec)   p_kst 7.516129e-04   p_cons 5.116581e-01   p_joint 7.516129e-04

Joint ci ratio: 2.529396e-01	ci left: 6.552093e-04	ci right 8.477679e-04	k: 239	n:320000
Cons ci ratio: 6.770120e-03	ci left: 5.099071e-01	ci right 5.133740e-01	k: 163725	n:320000
KS ci ratio: 2.529396e-01	ci left: 6.552093e-04	ci right 8.477679e-04	k: 239	n:320000
DLST   320000 perm   99 sec   (3227 perm/sec)   p_kst 7.468750e-04   p_cons 5.116406e-01   p_joint 7.468750e-04

Joint ci ratio: 2.478283e-01	ci left: 6.637566e-04	ci right 8.542779e-04	k: 249	n:330000
Cons ci ratio: 6.664547e-03	ci left: 5.100990e-01	ci right 5.135129e-01	k: 168896	n:330000
KS ci ratio: 2.478283e-01	ci left: 6.637566e-04	ci right 8.542779e-04	k: 249	n:330000
DLST   330000 perm   104 sec   (3184 perm/sec)   p_kst 7.545455e-04   p_cons 5.118061e-01   p_joint 7.545455e-04

Joint ci ratio: 2.468449e-01	ci left: 6.497515e-04	ci right 8.353992e-04	k: 251	n:340000
Cons ci ratio: 6.564150e-03	ci left: 5.102506e-01	ci right 5.136139e-01	k: 174057	n:340000
KS ci ratio: 2.468449e-01	ci left: 6.497515e-04	ci right 8.353992e-04	k: 251	n:340000
DLST   340000 perm   108 sec   (3144 perm/sec)   p_kst 7.382353e-04   p_cons 5.119324e-01   p_joint 7.382353e-04

Joint ci ratio: 2.434865e-01	ci left: 6.499586e-04	ci right 8.327569e-04	k: 258	n:350000
Cons ci ratio: 6.467194e-03	ci left: 5.104682e-01	ci right 5.137830e-01	k: 179244	n:350000
KS ci ratio: 2.434865e-01	ci left: 6.499586e-04	ci right 8.327569e-04	k: 258	n:350000
DLST   350000 perm   113 sec   (3106 perm/sec)   p_kst 7.371429e-04   p_cons 5.121257e-01   p_joint 7.371429e-04

Joint ci ratio: 2.416289e-01	ci left: 6.423397e-04	ci right 8.214103e-04	k: 262	n:360000
Cons ci ratio: 6.378664e-03	ci left: 5.103407e-01	ci right 5.136091e-01	k: 184311	n:360000
KS ci ratio: 2.416289e-01	ci left: 6.423397e-04	ci right 8.214103e-04	k: 262	n:360000
DLST   360000 perm   117 sec   (3068 perm/sec)   p_kst 7.277778e-04   p_cons 5.119750e-01   p_joint 7.277778e-04

Joint ci ratio: 2.384762e-01	ci left: 6.427602e-04	ci right 8.192647e-04	k: 269	n:370000
Cons ci ratio: 6.293944e-03	ci left: 5.101987e-01	ci right 5.134227e-01	k: 189370	n:370000
KS ci ratio: 2.384762e-01	ci left: 6.427602e-04	ci right 8.192647e-04	k: 269	n:370000
DLST   370000 perm   122 sec   (3030 perm/sec)   p_kst 7.270270e-04   p_cons 5.118108e-01   p_joint 7.270270e-04

Joint ci ratio: 2.375995e-01	ci left: 6.307943e-04	ci right 8.032823e-04	k: 271	n:380000
Cons ci ratio: 6.210286e-03	ci left: 5.102435e-01	ci right 5.134247e-01	k: 194497	n:380000
KS ci ratio: 2.375995e-01	ci left: 6.307943e-04	ci right 8.032823e-04	k: 271	n:380000
DLST   380000 perm   127 sec   (2993 perm/sec)   p_kst 7.131579e-04   p_cons 5.118342e-01   p_joint 7.131579e-04

Joint ci ratio: 2.346000e-01	ci left: 6.315071e-04	ci right 8.016938e-04	k: 278	n:390000
Cons ci ratio: 6.129124e-03	ci left: 5.103478e-01	ci right 5.134879e-01	k: 199648	n:390000
KS ci ratio: 2.346000e-01	ci left: 6.315071e-04	ci right 8.016938e-04	k: 278	n:390000
DLST   390000 perm   132 sec   (2960 perm/sec)   p_kst 7.128205e-04   p_cons 5.119179e-01   p_joint 7.128205e-04

Joint ci ratio: 2.317113e-01	ci left: 6.321973e-04	ci right 8.001718e-04	k: 285	n:400000
Cons ci ratio: 6.052879e-03	ci left: 5.102971e-01	ci right 5.133977e-01	k: 204739	n:400000
KS ci ratio: 2.317113e-01	ci left: 6.321973e-04	ci right 8.001718e-04	k: 285	n:400000
DLST   400000 perm   137 sec   (2914 perm/sec)   p_kst 7.125000e-04   p_cons 5.118475e-01   p_joint 7.125000e-04

Joint ci ratio: 2.293187e-01	ci left: 6.305669e-04	ci right 7.961333e-04	k: 291	n:410000
Cons ci ratio: 5.976988e-03	ci left: 5.104516e-01	ci right 5.135141e-01	k: 209913	n:410000
KS ci ratio: 2.293187e-01	ci left: 6.305669e-04	ci right 7.961333e-04	k: 291	n:410000
DLST   410000 perm   143 sec   (2877 perm/sec)   p_kst 7.097561e-04   p_cons 5.119829e-01   p_joint 7.097561e-04

Joint ci ratio: 2.269987e-01	ci left: 6.290226e-04	ci right 7.922786e-04	k: 297	n:420000
Cons ci ratio: 5.905400e-03	ci left: 5.104704e-01	ci right 5.134961e-01	k: 215033	n:420000
KS ci ratio: 2.269987e-01	ci left: 6.290226e-04	ci right 7.922786e-04	k: 297	n:420000
DLST   420000 perm   148 sec   (2847 perm/sec)   p_kst 7.071429e-04   p_cons 5.119833e-01   p_joint 7.071429e-04

Joint ci ratio: 2.243787e-01	ci left: 6.297530e-04	ci right 7.910514e-04	k: 304	n:430000
Cons ci ratio: 5.835564e-03	ci left: 5.105536e-01	ci right 5.135439e-01	k: 220181	n:430000
KS ci ratio: 2.243787e-01	ci left: 6.297530e-04	ci right 7.910514e-04	k: 304	n:430000
DLST   430000 perm   153 sec   (2815 perm/sec)   p_kst 7.069767e-04   p_cons 5.120488e-01   p_joint 7.069767e-04

Joint ci ratio: 2.225623e-01	ci left: 6.261679e-04	ci right 7.850718e-04	k: 309	n:440000
Cons ci ratio: 5.769067e-03	ci left: 5.105537e-01	ci right 5.135098e-01	k: 225294	n:440000
KS ci ratio: 2.225623e-01	ci left: 6.261679e-04	ci right 7.850718e-04	k: 309	n:440000
DLST   440000 perm   158 sec   (2786 perm/sec)   p_kst 7.022727e-04   p_cons 5.120318e-01   p_joint 7.022727e-04

Joint ci ratio: 2.193998e-01	ci left: 6.311463e-04	ci right 7.887307e-04	k: 318	n:450000
Cons ci ratio: 5.704006e-03	ci left: 5.106228e-01	ci right 5.135459e-01	k: 230438	n:450000
KS ci ratio: 2.193998e-01	ci left: 6.311463e-04	ci right 7.887307e-04	k: 318	n:450000
DLST   450000 perm   163 sec   (2756 perm/sec)   p_kst 7.066667e-04   p_cons 5.120844e-01   p_joint 7.066667e-04

Joint ci ratio: 2.153849e-01	ci left: 6.420928e-04	ci right 7.990889e-04	k: 330	n:460000
Cons ci ratio: 5.643036e-03	ci left: 5.105174e-01	ci right 5.134085e-01	k: 235503	n:460000
KS ci ratio: 2.153849e-01	ci left: 6.420928e-04	ci right 7.990889e-04	k: 330	n:460000
DLST   460000 perm   169 sec   (2726 perm/sec)   p_kst 7.173913e-04   p_cons 5.119630e-01   p_joint 7.173913e-04

Joint ci ratio: 2.122027e-01	ci left: 6.485690e-04	ci right 8.045008e-04	k: 340	n:470000
Cons ci ratio: 5.580676e-03	ci left: 5.107124e-01	ci right 5.135726e-01	k: 240707	n:470000
KS ci ratio: 2.122027e-01	ci left: 6.485690e-04	ci right 8.045008e-04	k: 340	n:470000
DLST   470000 perm   174 sec   (2697 perm/sec)   p_kst 7.234043e-04   p_cons 5.121426e-01   p_joint 7.234043e-04

Joint ci ratio: 2.094562e-01	ci left: 6.528173e-04	ci right 8.074786e-04	k: 349	n:480000
Cons ci ratio: 5.522479e-03	ci left: 5.107057e-01	ci right 5.135359e-01	k: 245818	n:480000
KS ci ratio: 2.094562e-01	ci left: 6.528173e-04	ci right 8.074786e-04	k: 349	n:480000
DLST   480000 perm   180 sec   (2670 perm/sec)   p_kst 7.270833e-04   p_cons 5.121208e-01   p_joint 7.270833e-04

Joint ci ratio: 2.085652e-01	ci left: 6.452963e-04	ci right 7.974423e-04	k: 352	n:490000
Cons ci ratio: 5.465060e-03	ci left: 5.107912e-01	ci right 5.135923e-01	k: 250974	n:490000
KS ci ratio: 2.085652e-01	ci left: 6.452963e-04	ci right 7.974423e-04	k: 352	n:490000
DLST   490000 perm   186 sec   (2641 perm/sec)   p_kst 7.183673e-04   p_cons 5.121918e-01   p_joint 7.183673e-04

Joint ci ratio: 2.053888e-01	ci left: 6.532504e-04	ci right 8.046317e-04	k: 363	n:500000
Cons ci ratio: 5.410045e-03	ci left: 5.108134e-01	ci right 5.135864e-01	k: 256100	n:500000
KS ci ratio: 2.053888e-01	ci left: 6.532504e-04	ci right 8.046317e-04	k: 363	n:500000
DLST   500000 perm   191 sec   (2614 perm/sec)   p_kst 7.260000e-04   p_cons 5.122000e-01   p_joint 7.260000e-04

Joint ci ratio: 2.037170e-01	ci left: 6.516037e-04	ci right 8.012212e-04	k: 369	n:510000
Cons ci ratio: 5.356512e-03	ci left: 5.108487e-01	ci right 5.135943e-01	k: 261233	n:510000
KS ci ratio: 2.037170e-01	ci left: 6.516037e-04	ci right 8.012212e-04	k: 369	n:510000
DLST   510000 perm   197 sec   (2588 perm/sec)   p_kst 7.235294e-04   p_cons 5.122216e-01   p_joint 7.235294e-04

Joint ci ratio: 2.028969e-01	ci left: 6.445481e-04	ci right 7.918760e-04	k: 372	n:520000
Cons ci ratio: 5.303619e-03	ci left: 5.109692e-01	ci right 5.136883e-01	k: 266411	n:520000
KS ci ratio: 2.028969e-01	ci left: 6.445481e-04	ci right 7.918760e-04	k: 372	n:520000
DLST   520000 perm   203 sec   (2561 perm/sec)   p_kst 7.153846e-04   p_cons 5.123288e-01   p_joint 7.153846e-04

Joint ci ratio: 2.007553e-01	ci left: 6.467185e-04	ci right 7.927909e-04	k: 380	n:530000
Cons ci ratio: 5.253967e-03	ci left: 5.109231e-01	ci right 5.136164e-01	k: 271503	n:530000
KS ci ratio: 2.007553e-01	ci left: 6.467185e-04	ci right 7.927909e-04	k: 380	n:530000
DLST   530000 perm   209 sec   (2536 perm/sec)   p_kst 7.169811e-04   p_cons 5.122698e-01   p_joint 7.169811e-04

Joint ci ratio: 1.997103e-01	ci left: 6.417781e-04	ci right 7.858882e-04	k: 384	n:540000
Cons ci ratio: 5.204180e-03	ci left: 5.110232e-01	ci right 5.136914e-01	k: 276673	n:540000
KS ci ratio: 1.997103e-01	ci left: 6.417781e-04	ci right 7.858882e-04	k: 384	n:540000
DLST   540000 perm   215 sec   (2512 perm/sec)   p_kst 7.111111e-04   p_cons 5.123574e-01   p_joint 7.111111e-04

Joint ci ratio: 1.959285e-01	ci left: 6.560319e-04	ci right 8.002204e-04	k: 399	n:550000
Cons ci ratio: 5.156044e-03	ci left: 5.110944e-01	ci right 5.137382e-01	k: 281829	n:550000
KS ci ratio: 1.959285e-01	ci left: 6.560319e-04	ci right 8.002204e-04	k: 399	n:550000
DLST   550000 perm   221 sec   (2489 perm/sec)   p_kst 7.254545e-04   p_cons 5.124164e-01   p_joint 7.254545e-04

Joint ci ratio: 1.935239e-01	ci left: 6.613038e-04	ci right 8.046571e-04	k: 409	n:560000
Cons ci ratio: 5.110188e-03	ci left: 5.110685e-01	ci right 5.136886e-01	k: 286932	n:560000
KS ci ratio: 1.935239e-01	ci left: 6.613038e-04	ci right 8.046571e-04	k: 409	n:560000
DLST   560000 perm   227 sec   (2466 perm/sec)   p_kst 7.303571e-04   p_cons 5.123786e-01   p_joint 7.303571e-04

Joint ci ratio: 1.916630e-01	ci left: 6.630604e-04	ci right 8.052513e-04	k: 417	n:570000
Cons ci ratio: 5.064839e-03	ci left: 5.111120e-01	ci right 5.137090e-01	k: 292074	n:570000
KS ci ratio: 1.916630e-01	ci left: 6.630604e-04	ci right 8.052513e-04	k: 417	n:570000
DLST   570000 perm   233 sec   (2444 perm/sec)   p_kst 7.315789e-04   p_cons 5.124105e-01   p_joint 7.315789e-04

Joint ci ratio: 1.900781e-01	ci left: 6.631206e-04	ci right 8.040126e-04	k: 424	n:580000
Cons ci ratio: 5.020799e-03	ci left: 5.111420e-01	ci right 5.137165e-01	k: 297209	n:580000
KS ci ratio: 1.900781e-01	ci left: 6.631206e-04	ci right 8.040126e-04	k: 424	n:580000
DLST   580000 perm   239 sec   (2422 perm/sec)   p_kst 7.310345e-04   p_cons 5.124293e-01   p_joint 7.310345e-04

Joint ci ratio: 1.889701e-01	ci left: 6.599536e-04	ci right 7.992616e-04	k: 429	n:590000
Cons ci ratio: 4.977853e-03	ci left: 5.111745e-01	ci right 5.137271e-01	k: 302346	n:590000
KS ci ratio: 1.889701e-01	ci left: 6.599536e-04	ci right 7.992616e-04	k: 429	n:590000
DLST   590000 perm   246 sec   (2400 perm/sec)   p_kst 7.271186e-04   p_cons 5.124508e-01   p_joint 7.271186e-04

Joint ci ratio: 1.878813e-01	ci left: 6.568946e-04	ci right 7.946667e-04	k: 434	n:600000
Cons ci ratio: 4.936057e-03	ci left: 5.111994e-01	ci right 5.137305e-01	k: 307479	n:600000
KS ci ratio: 1.878813e-01	ci left: 6.568946e-04	ci right 7.946667e-04	k: 434	n:600000
DLST   600000 perm   253 sec   (2376 perm/sec)   p_kst 7.233333e-04   p_cons 5.124650e-01   p_joint 7.233333e-04

Joint ci ratio: 1.863877e-01	ci left: 6.570636e-04	ci right 7.936518e-04	k: 441	n:610000
Cons ci ratio: 4.895120e-03	ci left: 5.112415e-01	ci right 5.137518e-01	k: 312623	n:610000
KS ci ratio: 1.863877e-01	ci left: 6.570636e-04	ci right 7.936518e-04	k: 441	n:610000
DLST   610000 perm   260 sec   (2349 perm/sec)   p_kst 7.229508e-04   p_cons 5.124967e-01   p_joint 7.229508e-04

Joint ci ratio: 1.845183e-01	ci left: 6.603082e-04	ci right 7.960401e-04	k: 450	n:620000
Cons ci ratio: 4.855373e-03	ci left: 5.112630e-01	ci right 5.137530e-01	k: 317755	n:620000
KS ci ratio: 1.845183e-01	ci left: 6.603082e-04	ci right 7.960401e-04	k: 450	n:620000
DLST   620000 perm   267 sec   (2323 perm/sec)   p_kst 7.258065e-04   p_cons 5.125081e-01   p_joint 7.258065e-04

Joint ci ratio: 1.831028e-01	ci left: 6.604270e-04	ci right 7.950263e-04	k: 457	n:630000
Cons ci ratio: 4.817404e-03	ci left: 5.111982e-01	ci right 5.136683e-01	k: 322833	n:630000
KS ci ratio: 1.831028e-01	ci left: 6.604270e-04	ci right 7.950263e-04	k: 457	n:630000
DLST   630000 perm   274 sec   (2297 perm/sec)   p_kst 7.253968e-04   p_cons 5.124333e-01   p_joint 7.253968e-04

Joint ci ratio: 1.813296e-01	ci left: 6.635290e-04	ci right 7.973071e-04	k: 466	n:640000
Cons ci ratio: 4.779909e-03	ci left: 5.111777e-01	ci right 5.136284e-01	k: 327938	n:640000
KS ci ratio: 1.813296e-01	ci left: 6.635290e-04	ci right 7.973071e-04	k: 466	n:640000
DLST   640000 perm   282 sec   (2268 perm/sec)   p_kst 7.281250e-04   p_cons 5.124031e-01   p_joint 7.281250e-04

Joint ci ratio: 1.784848e-01	ci left: 6.753590e-04	ci right 8.091554e-04	k: 481	n:650000
Cons ci ratio: 4.741524e-03	ci left: 5.113425e-01	ci right 5.137743e-01	k: 333163	n:650000
KS ci ratio: 1.784848e-01	ci left: 6.753590e-04	ci right 8.091554e-04	k: 481	n:650000
DLST   650000 perm   290 sec   (2242 perm/sec)   p_kst 7.400000e-04   p_cons 5.125585e-01   p_joint 7.400000e-04

Joint ci ratio: 1.764818e-01	ci left: 6.810527e-04	ci right 8.143016e-04	k: 492	n:660000
Cons ci ratio: 4.706103e-03	ci left: 5.112842e-01	ci right 5.136975e-01	k: 338244	n:660000
KS ci ratio: 1.764818e-01	ci left: 6.810527e-04	ci right 8.143016e-04	k: 492	n:660000
DLST   660000 perm   299 sec   (2204 perm/sec)   p_kst 7.454545e-04   p_cons 5.124909e-01   p_joint 7.454545e-04

Joint ci ratio: 1.752422e-01	ci left: 6.808756e-04	ci right 8.130550e-04	k: 499	n:670000
Cons ci ratio: 4.670110e-03	ci left: 5.113725e-01	ci right 5.137677e-01	k: 343422	n:670000
KS ci ratio: 1.752422e-01	ci left: 6.808756e-04	ci right 8.130550e-04	k: 499	n:670000
DLST   670000 perm   306 sec   (2187 perm/sec)   p_kst 7.447761e-04   p_cons 5.125701e-01   p_joint 7.447761e-04

Joint ci ratio: 1.736858e-01	ci left: 6.835202e-04	ci right 8.149109e-04	k: 508	n:680000
Cons ci ratio: 4.634371e-03	ci left: 5.115185e-01	ci right 5.138961e-01	k: 348641	n:680000
KS ci ratio: 1.736858e-01	ci left: 6.835202e-04	ci right 8.149109e-04	k: 508	n:680000
DLST   680000 perm   314 sec   (2168 perm/sec)   p_kst 7.470588e-04   p_cons 5.127074e-01   p_joint 7.470588e-04

Joint ci ratio: 1.731767e-01	ci left: 6.777730e-04	ci right 8.076372e-04	k: 511	n:690000
Cons ci ratio: 4.599453e-03	ci left: 5.116590e-01	ci right 5.140192e-01	k: 353859	n:690000
KS ci ratio: 1.731767e-01	ci left: 6.777730e-04	ci right 8.076372e-04	k: 511	n:690000
DLST   690000 perm   321 sec   (2151 perm/sec)   p_kst 7.405797e-04   p_cons 5.128391e-01   p_joint 7.405797e-04

Joint ci ratio: 1.718394e-01	ci left: 6.790257e-04	ci right 8.080210e-04	k: 519	n:700000
Cons ci ratio: 4.566200e-03	ci left: 5.116983e-01	ci right 5.140416e-01	k: 359009	n:700000
KS ci ratio: 1.718394e-01	ci left: 6.790257e-04	ci right 8.080210e-04	k: 519	n:700000
DLST   700000 perm   328 sec   (2133 perm/sec)   p_kst 7.414286e-04   p_cons 5.128700e-01   p_joint 7.414286e-04

Joint ci ratio: 1.703712e-01	ci left: 6.815953e-04	ci right 8.098587e-04	k: 528	n:710000
Cons ci ratio: 4.533696e-03	ci left: 5.117324e-01	ci right 5.140591e-01	k: 364156	n:710000
KS ci ratio: 1.703712e-01	ci left: 6.815953e-04	ci right 8.098587e-04	k: 528	n:710000
DLST   710000 perm   335 sec   (2117 perm/sec)   p_kst 7.436620e-04   p_cons 5.128958e-01   p_joint 7.436620e-04

Joint ci ratio: 1.684705e-01	ci left: 6.880889e-04	ci right 8.159831e-04	k: 540	n:720000
Cons ci ratio: 4.500700e-03	ci left: 5.118961e-01	ci right 5.142066e-01	k: 369397	n:720000
KS ci ratio: 1.684705e-01	ci left: 6.880889e-04	ci right 8.159831e-04	k: 540	n:720000
DLST   720000 perm   343 sec   (2100 perm/sec)   p_kst 7.500000e-04   p_cons 5.130514e-01   p_joint 7.500000e-04

Joint ci ratio: 1.676976e-01	ci left: 6.852241e-04	ci right 8.119426e-04	k: 545	n:730000
Cons ci ratio: 4.469896e-03	ci left: 5.118897e-01	ci right 5.141842e-01	k: 374517	n:730000
KS ci ratio: 1.676976e-01	ci left: 6.852241e-04	ci right 8.119426e-04	k: 545	n:730000
DLST   730000 perm   350 sec   (2083 perm/sec)   p_kst 7.465753e-04   p_cons 5.130370e-01   p_joint 7.465753e-04

Joint ci ratio: 1.672393e-01	ci left: 6.798483e-04	ci right 8.051944e-04	k: 548	n:740000
Cons ci ratio: 4.439524e-03	ci left: 5.119051e-01	ci right 5.141840e-01	k: 379653	n:740000
KS ci ratio: 1.672393e-01	ci left: 6.798483e-04	ci right 8.051944e-04	k: 548	n:740000
DLST   740000 perm   358 sec   (2068 perm/sec)   p_kst 7.405405e-04   p_cons 5.130446e-01   p_joint 7.405405e-04

Joint ci ratio: 1.661833e-01	ci left: 6.797276e-04	ci right 8.041809e-04	k: 555	n:750000
Cons ci ratio: 4.408856e-03	ci left: 5.120228e-01	ci right 5.142865e-01	k: 384866	n:750000
KS ci ratio: 1.661833e-01	ci left: 6.797276e-04	ci right 8.041809e-04	k: 555	n:750000
DLST   750000 perm   366 sec   (2052 perm/sec)   p_kst 7.400000e-04   p_cons 5.131547e-01   p_joint 7.400000e-04

Joint ci ratio: 1.651470e-01	ci left: 6.796124e-04	ci right 8.031916e-04	k: 562	n:760000
Cons ci ratio: 4.379277e-03	ci left: 5.120848e-01	ci right 5.143335e-01	k: 390039	n:760000
KS ci ratio: 1.651470e-01	ci left: 6.796124e-04	ci right 8.031916e-04	k: 562	n:760000
DLST   760000 perm   373 sec   (2035 perm/sec)   p_kst 7.394737e-04   p_cons 5.132092e-01   p_joint 7.394737e-04

Joint ci ratio: 1.635565e-01	ci left: 6.844846e-04	ci right 8.076331e-04	k: 573	n:770000
Cons ci ratio: 4.350658e-03	ci left: 5.121024e-01	ci right 5.143365e-01	k: 395179	n:770000
KS ci ratio: 1.635565e-01	ci left: 6.844846e-04	ci right 8.076331e-04	k: 573	n:770000
DLST   770000 perm   381 sec   (2019 perm/sec)   p_kst 7.441558e-04   p_cons 5.132195e-01   p_joint 7.441558e-04

Joint ci ratio: 1.624285e-01	ci left: 6.855472e-04	ci right 8.079532e-04	k: 581	n:780000
Cons ci ratio: 4.322260e-03	ci left: 5.121580e-01	ci right 5.143778e-01	k: 400349	n:780000
KS ci ratio: 1.624285e-01	ci left: 6.855472e-04	ci right 8.079532e-04	k: 581	n:780000
DLST   780000 perm   389 sec   (2004 perm/sec)   p_kst 7.448718e-04   p_cons 5.132679e-01   p_joint 7.448718e-04

Joint ci ratio: 1.614605e-01	ci left: 6.853711e-04	ci right 8.069455e-04	k: 588	n:790000
Cons ci ratio: 4.294748e-03	ci left: 5.121731e-01	ci right 5.143787e-01	k: 405488	n:790000
KS ci ratio: 1.614605e-01	ci left: 6.853711e-04	ci right 8.069455e-04	k: 588	n:790000
DLST   790000 perm   397 sec   (1989 perm/sec)   p_kst 7.443038e-04   p_cons 5.132759e-01   p_joint 7.443038e-04

Joint ci ratio: 1.609153e-01	ci left: 6.816021e-04	ci right 8.020604e-04	k: 592	n:800000
Cons ci ratio: 4.267093e-03	ci left: 5.122653e-01	ci right 5.144571e-01	k: 410689	n:800000
KS ci ratio: 1.609153e-01	ci left: 6.816021e-04	ci right 8.020604e-04	k: 592	n:800000
DLST   800000 perm   405 sec   (1975 perm/sec)   p_kst 7.400000e-04   p_cons 5.133612e-01   p_joint 7.400000e-04

Joint ci ratio: 1.599739e-01	ci left: 6.814823e-04	ci right 8.011471e-04	k: 599	n:810000
Cons ci ratio: 4.240258e-03	ci left: 5.123207e-01	ci right 5.144989e-01	k: 415862	n:810000
KS ci ratio: 1.599739e-01	ci left: 6.814823e-04	ci right 8.011471e-04	k: 599	n:810000
DLST   810000 perm   413 sec   (1960 perm/sec)   p_kst 7.395062e-04   p_cons 5.134099e-01   p_joint 7.395062e-04

Joint ci ratio: 1.590489e-01	ci left: 6.813674e-04	ci right 8.002540e-04	k: 606	n:820000
Cons ci ratio: 4.213790e-03	ci left: 5.123907e-01	ci right 5.145555e-01	k: 421048	n:820000
KS ci ratio: 1.590489e-01	ci left: 6.813674e-04	ci right 8.002540e-04	k: 606	n:820000
DLST   820000 perm   422 sec   (1945 perm/sec)   p_kst 7.390244e-04   p_cons 5.134732e-01   p_joint 7.390244e-04

Joint ci ratio: 1.574992e-01	ci left: 6.870435e-04	ci right 8.056422e-04	k: 618	n:830000
Cons ci ratio: 4.187609e-03	ci left: 5.124831e-01	ci right 5.146349e-01	k: 426254	n:830000
KS ci ratio: 1.574992e-01	ci left: 6.870435e-04	ci right 8.056422e-04	k: 618	n:830000
DLST   830000 perm   430 sec   (1930 perm/sec)   p_kst 7.445783e-04   p_cons 5.135590e-01   p_joint 7.445783e-04

Joint ci ratio: 1.568672e-01	ci left: 6.845826e-04	ci right 8.022376e-04	k: 623	n:840000
Cons ci ratio: 4.162961e-03	ci left: 5.124472e-01	ci right 5.145861e-01	k: 431354	n:840000
KS ci ratio: 1.568672e-01	ci left: 6.845826e-04	ci right 8.022376e-04	k: 623	n:840000
DLST   840000 perm   438 sec   (1916 perm/sec)   p_kst 7.416667e-04   p_cons 5.135167e-01   p_joint 7.416667e-04

Joint ci ratio: 1.561186e-01	ci left: 6.833110e-04	ci right 8.001346e-04	k: 629	n:850000
Cons ci ratio: 4.137847e-03	ci left: 5.125203e-01	ci right 5.146466e-01	k: 436546	n:850000
KS ci ratio: 1.561186e-01	ci left: 6.833110e-04	ci right 8.001346e-04	k: 629	n:850000
DLST   850000 perm   447 sec   (1903 perm/sec)   p_kst 7.400000e-04   p_cons 5.135835e-01   p_joint 7.400000e-04

Joint ci ratio: 1.550151e-01	ci left: 6.854234e-04	ci right 8.017029e-04	k: 638	n:860000
Cons ci ratio: 4.113096e-03	ci left: 5.126023e-01	ci right 5.147162e-01	k: 441747	n:860000
KS ci ratio: 1.550151e-01	ci left: 6.854234e-04	ci right 8.017029e-04	k: 638	n:860000
DLST   860000 perm   455 sec   (1889 perm/sec)   p_kst 7.418605e-04   p_cons 5.136593e-01   p_joint 7.418605e-04

Joint ci ratio: 1.538160e-01	ci left: 6.885951e-04	ci right 8.044258e-04	k: 648	n:870000
Cons ci ratio: 4.088426e-03	ci left: 5.127261e-01	ci right 5.148278e-01	k: 446986	n:870000
KS ci ratio: 1.538160e-01	ci left: 6.885951e-04	ci right 8.044258e-04	k: 648	n:870000
DLST   870000 perm   464 sec   (1875 perm/sec)   p_kst 7.448276e-04   p_cons 5.137770e-01   p_joint 7.448276e-04

Joint ci ratio: 1.532271e-01	ci left: 6.862337e-04	ci right 8.011846e-04	k: 653	n:880000
Cons ci ratio: 4.065054e-03	ci left: 5.127415e-01	ci right 5.148312e-01	k: 452132	n:880000
KS ci ratio: 1.532271e-01	ci left: 6.862337e-04	ci right 8.011846e-04	k: 653	n:880000
DLST   880000 perm   473 sec   (1861 perm/sec)   p_kst 7.420455e-04   p_cons 5.137864e-01   p_joint 7.420455e-04

Joint ci ratio: 1.525291e-01	ci left: 6.850068e-04	ci right 7.991818e-04	k: 659	n:890000
Cons ci ratio: 4.042605e-03	ci left: 5.126913e-01	ci right 5.147692e-01	k: 457220	n:890000
KS ci ratio: 1.525291e-01	ci left: 6.850068e-04	ci right 7.991818e-04	k: 659	n:890000
DLST   890000 perm   481 sec   (1849 perm/sec)   p_kst 7.404494e-04   p_cons 5.137303e-01   p_joint 7.404494e-04

Joint ci ratio: 1.514995e-01	ci left: 6.870153e-04	ci right 8.006821e-04	k: 668	n:900000
Cons ci ratio: 4.020918e-03	ci left: 5.125935e-01	ci right 5.146598e-01	k: 462264	n:900000
KS ci ratio: 1.514995e-01	ci left: 6.870153e-04	ci right 8.006821e-04	k: 668	n:900000
DLST   900000 perm   490 sec   (1836 perm/sec)   p_kst 7.422222e-04   p_cons 5.136267e-01   p_joint 7.422222e-04

Joint ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
Cons ci ratio: 3.998925e-03	ci left: 5.125791e-01	ci right 5.146340e-01	k: 467382	n:910000
KS ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
DLST   910000 perm   499 sec   (1823 perm/sec)   p_kst 7.450549e-04   p_cons 5.136066e-01   p_joint 7.450549e-04

Joint ci ratio: 1.497197e-01	ci left: 6.888162e-04	ci right 8.013221e-04	k: 684	n:920000
Cons ci ratio: 3.977505e-03	ci left: 5.125379e-01	ci right 5.145816e-01	k: 472475	n:920000
KS ci ratio: 1.497197e-01	ci left: 6.888162e-04	ci right 8.013221e-04	k: 684	n:920000
DLST   920000 perm   508 sec   (1810 perm/sec)   p_kst 7.434783e-04   p_cons 5.135598e-01   p_joint 7.434783e-04

Joint ci ratio: 1.487456e-01	ci left: 6.907257e-04	ci right 8.027442e-04	k: 693	n:930000
Cons ci ratio: 3.956476e-03	ci left: 5.124911e-01	ci right 5.145238e-01	k: 477562	n:930000
KS ci ratio: 1.487456e-01	ci left: 6.907257e-04	ci right 8.027442e-04	k: 693	n:930000
DLST   930000 perm   517 sec   (1798 perm/sec)   p_kst 7.451613e-04   p_cons 5.135075e-01   p_joint 7.451613e-04

Joint ci ratio: 1.478955e-01	ci left: 6.915724e-04	ci right 8.030306e-04	k: 701	n:940000
Cons ci ratio: 3.935585e-03	ci left: 5.124699e-01	ci right 5.144917e-01	k: 482672	n:940000
KS ci ratio: 1.478955e-01	ci left: 6.915724e-04	ci right 8.030306e-04	k: 701	n:940000
DLST   940000 perm   526 sec   (1786 perm/sec)   p_kst 7.457447e-04   p_cons 5.134809e-01   p_joint 7.457447e-04

Joint ci ratio: 1.468531e-01	ci left: 6.944309e-04	ci right 8.054917e-04	k: 711	n:950000
Cons ci ratio: 3.915203e-03	ci left: 5.124259e-01	ci right 5.144371e-01	k: 487760	n:950000
KS ci ratio: 1.468531e-01	ci left: 6.944309e-04	ci right 8.054917e-04	k: 711	n:950000
DLST   950000 perm   535 sec   (1774 perm/sec)   p_kst 7.484211e-04   p_cons 5.134316e-01   p_joint 7.484211e-04

Joint ci ratio: 1.460349e-01	ci left: 6.952253e-04	ci right 8.057396e-04	k: 719	n:960000
Cons ci ratio: 3.894801e-03	ci left: 5.124257e-01	ci right 5.144264e-01	k: 492889	n:960000
KS ci ratio: 1.460349e-01	ci left: 6.952253e-04	ci right 8.057396e-04	k: 719	n:960000
DLST   960000 perm   545 sec   (1763 perm/sec)   p_kst 7.489583e-04   p_cons 5.134260e-01   p_joint 7.489583e-04

Joint ci ratio: 1.455307e-01	ci left: 6.930245e-04	ci right 8.027756e-04	k: 724	n:970000
Cons ci ratio: 3.874363e-03	ci left: 5.124708e-01	ci right 5.144611e-01	k: 498062	n:970000
KS ci ratio: 1.455307e-01	ci left: 6.930245e-04	ci right 8.027756e-04	k: 724	n:970000
DLST   970000 perm   554 sec   (1751 perm/sec)   p_kst 7.463918e-04   p_cons 5.134660e-01   p_joint 7.463918e-04

Joint ci ratio: 1.447343e-01	ci left: 6.938197e-04	ci right 8.030435e-04	k: 732	n:980000
Cons ci ratio: 3.855094e-03	ci left: 5.124048e-01	ci right 5.143849e-01	k: 503127	n:980000
KS ci ratio: 1.447343e-01	ci left: 6.938197e-04	ci right 8.030435e-04	k: 732	n:980000
DLST   980000 perm   563 sec   (1739 perm/sec)   p_kst 7.469388e-04   p_cons 5.133949e-01   p_joint 7.469388e-04

Joint ci ratio: 1.441456e-01	ci left: 6.926530e-04	ci right 8.012115e-04	k: 738	n:990000
Cons ci ratio: 3.835489e-03	ci left: 5.124210e-01	ci right 5.143911e-01	k: 508272	n:990000
KS ci ratio: 1.441456e-01	ci left: 6.926530e-04	ci right 8.012115e-04	k: 738	n:990000
DLST   990000 perm   573 sec   (1728 perm/sec)   p_kst 7.454545e-04   p_cons 5.134061e-01   p_joint 7.454545e-04

Joint ci ratio: 1.432757e-01	ci left: 6.944029e-04	ci right 8.025227e-04	k: 747	n:1000000
Cons ci ratio: 3.815683e-03	ci left: 5.125018e-01	ci right 5.144621e-01	k: 513482	n:1000000
KS ci ratio: 1.432757e-01	ci left: 6.944029e-04	ci right 8.025227e-04	k: 747	n:1000000
DLST   1000000 perm   582 sec   (1717 perm/sec)   p_kst 7.470000e-04   p_cons 5.134820e-01   p_joint 7.470000e-04

Joint ci ratio: 1.427994e-01	ci left: 6.923009e-04	ci right 7.997045e-04	k: 752	n:1010000
Cons ci ratio: 3.796617e-03	ci left: 5.125237e-01	ci right 5.144742e-01	k: 518634	n:1010000
KS ci ratio: 1.427994e-01	ci left: 6.923009e-04	ci right 7.997045e-04	k: 752	n:1010000
DLST   1010000 perm   592 sec   (1705 perm/sec)   p_kst 7.445545e-04   p_cons 5.134990e-01   p_joint 7.445545e-04

Joint ci ratio: 1.421403e-01	ci left: 6.921318e-04	ci right 7.989715e-04	k: 759	n:1020000
Cons ci ratio: 3.778227e-03	ci left: 5.124932e-01	ci right 5.144342e-01	k: 523733	n:1020000
KS ci ratio: 1.421403e-01	ci left: 6.921318e-04	ci right 7.989715e-04	k: 759	n:1020000
DLST   1020000 perm   602 sec   (1694 perm/sec)   p_kst 7.441176e-04   p_cons 5.134637e-01   p_joint 7.441176e-04

Joint ci ratio: 1.416752e-01	ci left: 6.900940e-04	ci right 7.962412e-04	k: 764	n:1030000
Cons ci ratio: 3.759700e-03	ci left: 5.125167e-01	ci right 5.144482e-01	k: 528887	n:1030000
KS ci ratio: 1.416752e-01	ci left: 6.900940e-04	ci right 7.962412e-04	k: 764	n:1030000
DLST   1030000 perm   612 sec   (1684 perm/sec)   p_kst 7.417476e-04   p_cons 5.134825e-01   p_joint 7.417476e-04

Joint ci ratio: 1.409401e-01	ci left: 6.908789e-04	ci right 7.965491e-04	k: 772	n:1040000
Cons ci ratio: 3.741105e-03	ci left: 5.125850e-01	ci right 5.145072e-01	k: 534088	n:1040000
KS ci ratio: 1.409401e-01	ci left: 6.908789e-04	ci right 7.965491e-04	k: 772	n:1040000
DLST   1040000 perm   621 sec   (1674 perm/sec)   p_kst 7.423077e-04   p_cons 5.135462e-01   p_joint 7.423077e-04

Joint ci ratio: 1.406677e-01	ci left: 6.870555e-04	ci right 7.919207e-04	k: 775	n:1050000
Cons ci ratio: 3.723946e-03	ci left: 5.124959e-01	ci right 5.144088e-01	k: 539125	n:1050000
KS ci ratio: 1.406677e-01	ci left: 6.870555e-04	ci right 7.919207e-04	k: 775	n:1050000
DLST   1050000 perm   631 sec   (1663 perm/sec)   p_kst 7.380952e-04   p_cons 5.134524e-01   p_joint 7.380952e-04

Joint ci ratio: 1.401271e-01	ci left: 6.860353e-04	ci right 7.903089e-04	k: 781	n:1060000
Cons ci ratio: 3.705937e-03	ci left: 5.125546e-01	ci right 5.144585e-01	k: 544317	n:1060000
KS ci ratio: 1.401271e-01	ci left: 6.860353e-04	ci right 7.903089e-04	k: 781	n:1060000
DLST   1060000 perm   642 sec   (1652 perm/sec)   p_kst 7.367925e-04   p_cons 5.135066e-01   p_joint 7.367925e-04

Joint ci ratio: 1.389764e-01	ci left: 6.913493e-04	ci right 7.954961e-04	k: 794	n:1070000
Cons ci ratio: 3.688683e-03	ci left: 5.125450e-01	ci right 5.144400e-01	k: 549437	n:1070000
KS ci ratio: 1.389764e-01	ci left: 6.913493e-04	ci right 7.954961e-04	k: 794	n:1070000
DLST   1070000 perm   652 sec   (1642 perm/sec)   p_kst 7.420561e-04   p_cons 5.134925e-01   p_joint 7.420561e-04

Joint ci ratio: 1.379389e-01	ci left: 6.956742e-04	ci right 7.996260e-04	k: 806	n:1080000
Cons ci ratio: 3.671388e-03	ci left: 5.125735e-01	ci right 5.144597e-01	k: 554598	n:1080000
KS ci ratio: 1.379389e-01	ci left: 6.956742e-04	ci right 7.996260e-04	k: 806	n:1080000
DLST   1080000 perm   662 sec   (1632 perm/sec)   p_kst 7.462963e-04   p_cons 5.135167e-01   p_joint 7.462963e-04

Joint ci ratio: 1.375137e-01	ci left: 6.937209e-04	ci right 7.970352e-04	k: 811	n:1090000
Cons ci ratio: 3.654489e-03	ci left: 5.125805e-01	ci right 5.144580e-01	k: 559736	n:1090000
KS ci ratio: 1.375137e-01	ci left: 6.937209e-04	ci right 7.970352e-04	k: 811	n:1090000
DLST   1090000 perm   672 sec   (1621 perm/sec)   p_kst 7.440367e-04   p_cons 5.135193e-01   p_joint 7.440367e-04

Joint ci ratio: 1.370924e-01	ci left: 6.918036e-04	ci right 7.944910e-04	k: 816	n:1100000
Cons ci ratio: 3.638192e-03	ci left: 5.125364e-01	ci right 5.144054e-01	k: 564818	n:1100000
KS ci ratio: 1.370924e-01	ci left: 6.918036e-04	ci right 7.944910e-04	k: 816	n:1100000
DLST   1100000 perm   683 sec   (1611 perm/sec)   p_kst 7.418182e-04   p_cons 5.134709e-01   p_joint 7.418182e-04

Joint ci ratio: 1.368417e-01	ci left: 6.881812e-04	ci right 7.901288e-04	k: 819	n:1110000
Cons ci ratio: 3.621706e-03	ci left: 5.125490e-01	ci right 5.144095e-01	k: 569962	n:1110000
KS ci ratio: 1.368417e-01	ci left: 6.881812e-04	ci right 7.901288e-04	k: 819	n:1110000
DLST   1110000 perm   693 sec   (1602 perm/sec)   p_kst 7.378378e-04   p_cons 5.134793e-01   p_joint 7.378378e-04

Joint ci ratio: 1.365923e-01	ci left: 6.846236e-04	ci right 7.858443e-04	k: 822	n:1120000
Cons ci ratio: 3.605700e-03	ci left: 5.125256e-01	ci right 5.143779e-01	k: 575066	n:1120000
KS ci ratio: 1.365923e-01	ci left: 6.846236e-04	ci right 7.858443e-04	k: 822	n:1120000
DLST   1120000 perm   703 sec   (1593 perm/sec)   p_kst 7.339286e-04   p_cons 5.134518e-01   p_joint 7.339286e-04

Joint ci ratio: 1.358514e-01	ci left: 6.862582e-04	ci right 7.871258e-04	k: 831	n:1130000
Cons ci ratio: 3.589625e-03	ci left: 5.125417e-01	ci right 5.143857e-01	k: 580214	n:1130000
KS ci ratio: 1.358514e-01	ci left: 6.862582e-04	ci right 7.871258e-04	k: 831	n:1130000
DLST   1130000 perm   714 sec   (1583 perm/sec)   p_kst 7.353982e-04   p_cons 5.134637e-01   p_joint 7.353982e-04

Joint ci ratio: 1.355263e-01	ci left: 6.836280e-04	ci right 7.838490e-04	k: 835	n:1140000
Cons ci ratio: 3.574019e-03	ci left: 5.125215e-01	ci right 5.143574e-01	k: 585321	n:1140000
KS ci ratio: 1.355263e-01	ci left: 6.836280e-04	ci right 7.838490e-04	k: 835	n:1140000
DLST   1140000 perm   725 sec   (1573 perm/sec)   p_kst 7.324561e-04   p_cons 5.134395e-01   p_joint 7.324561e-04

Joint ci ratio: 1.353647e-01	ci left: 6.793635e-04	ci right 7.788311e-04	k: 837	n:1150000
Cons ci ratio: 3.558418e-03	ci left: 5.125295e-01	ci right 5.143574e-01	k: 590460	n:1150000
KS ci ratio: 1.353647e-01	ci left: 6.793635e-04	ci right 7.788311e-04	k: 837	n:1150000
DLST   1150000 perm   735 sec   (1564 perm/sec)   p_kst 7.278261e-04   p_cons 5.134435e-01   p_joint 7.278261e-04

Joint ci ratio: 1.348029e-01	ci left: 6.793374e-04	ci right 7.783553e-04	k: 844	n:1160000
Cons ci ratio: 3.543373e-03	ci left: 5.124874e-01	ci right 5.143074e-01	k: 595541	n:1160000
KS ci ratio: 1.348029e-01	ci left: 6.793374e-04	ci right 7.783553e-04	k: 844	n:1160000
DLST   1160000 perm   746 sec   (1555 perm/sec)   p_kst 7.275862e-04   p_cons 5.133974e-01   p_joint 7.275862e-04

Joint ci ratio: 1.340121e-01	ci left: 6.817908e-04	ci right 7.805369e-04	k: 854	n:1170000
Cons ci ratio: 3.528566e-03	ci left: 5.124392e-01	ci right 5.142514e-01	k: 600614	n:1170000
KS ci ratio: 1.340121e-01	ci left: 6.817908e-04	ci right 7.805369e-04	k: 854	n:1170000
DLST   1170000 perm   757 sec   (1546 perm/sec)   p_kst 7.299145e-04   p_cons 5.133453e-01   p_joint 7.299145e-04

Joint ci ratio: 1.333122e-01	ci left: 6.833850e-04	ci right 7.818041e-04	k: 863	n:1180000
Cons ci ratio: 3.513192e-03	ci left: 5.124986e-01	ci right 5.143031e-01	k: 605813	n:1180000
KS ci ratio: 1.333122e-01	ci left: 6.833850e-04	ci right 7.818041e-04	k: 863	n:1180000
DLST   1180000 perm   768 sec   (1537 perm/sec)   p_kst 7.313559e-04   p_cons 5.134008e-01   p_joint 7.313559e-04

Joint ci ratio: 1.326992e-01	ci left: 6.841413e-04	ci right 7.821806e-04	k: 871	n:1190000
Cons ci ratio: 3.498512e-03	ci left: 5.124864e-01	ci right 5.142833e-01	k: 610928	n:1190000
KS ci ratio: 1.326992e-01	ci left: 6.841413e-04	ci right 7.821806e-04	k: 871	n:1190000
DLST   1190000 perm   778 sec   (1529 perm/sec)   p_kst 7.319328e-04   p_cons 5.133849e-01   p_joint 7.319328e-04

Joint ci ratio: 1.323961e-01	ci left: 6.816629e-04	ci right 7.791063e-04	k: 875	n:1200000
Cons ci ratio: 3.483415e-03	ci left: 5.125603e-01	ci right 5.143497e-01	k: 616146	n:1200000
KS ci ratio: 1.323961e-01	ci left: 6.816629e-04	ci right 7.791063e-04	k: 875	n:1200000
DLST   1200000 perm   790 sec   (1520 perm/sec)   p_kst 7.291667e-04   p_cons 5.134550e-01   p_joint 7.291667e-04

Joint ci ratio: 1.318703e-01	ci left: 6.816232e-04	ci right 7.786436e-04	k: 882	n:1210000
Cons ci ratio: 3.469080e-03	ci left: 5.125511e-01	ci right 5.143331e-01	k: 621265	n:1210000
KS ci ratio: 1.318703e-01	ci left: 6.816232e-04	ci right 7.786436e-04	k: 882	n:1210000
DLST   1210000 perm   801 sec   (1511 perm/sec)   p_kst 7.289256e-04   p_cons 5.134421e-01   p_joint 7.289256e-04

Joint ci ratio: 1.314246e-01	ci left: 6.807922e-04	ci right 7.773413e-04	k: 888	n:1220000
Cons ci ratio: 3.454706e-03	ci left: 5.125733e-01	ci right 5.143479e-01	k: 626422	n:1220000
KS ci ratio: 1.314246e-01	ci left: 6.807922e-04	ci right 7.773413e-04	k: 888	n:1220000
DLST   1220000 perm   812 sec   (1502 perm/sec)   p_kst 7.278689e-04   p_cons 5.134607e-01   p_joint 7.278689e-04

Joint ci ratio: 1.309102e-01	ci left: 6.807616e-04	ci right 7.768991e-04	k: 895	n:1230000
Cons ci ratio: 3.440530e-03	ci left: 5.125919e-01	ci right 5.143593e-01	k: 631575	n:1230000
KS ci ratio: 1.309102e-01	ci left: 6.807616e-04	ci right 7.768991e-04	k: 895	n:1230000
DLST   1230000 perm   823 sec   (1494 perm/sec)   p_kst 7.276423e-04   p_cons 5.134756e-01   p_joint 7.276423e-04

Joint ci ratio: 1.305466e-01	ci left: 6.791719e-04	ci right 7.747979e-04	k: 900	n:1240000
Cons ci ratio: 3.426495e-03	ci left: 5.126150e-01	ci right 5.143753e-01	k: 636734	n:1240000
KS ci ratio: 1.305466e-01	ci left: 6.791719e-04	ci right 7.747979e-04	k: 900	n:1240000
DLST   1240000 perm   835 sec   (1486 perm/sec)   p_kst 7.258065e-04   p_cons 5.134952e-01   p_joint 7.258065e-04

Joint ci ratio: 1.300425e-01	ci left: 6.791560e-04	ci right 7.743819e-04	k: 907	n:1250000
Cons ci ratio: 3.412854e-03	ci left: 5.126050e-01	ci right 5.143582e-01	k: 641852	n:1250000
KS ci ratio: 1.300425e-01	ci left: 6.791560e-04	ci right 7.743819e-04	k: 907	n:1250000
DLST   1250000 perm   846 sec   (1477 perm/sec)   p_kst 7.256000e-04   p_cons 5.134816e-01   p_joint 7.256000e-04

Joint ci ratio: 1.294026e-01	ci left: 6.806770e-04	ci right 7.756105e-04	k: 916	n:1260000
Cons ci ratio: 3.399548e-03	ci left: 5.125697e-01	ci right 5.143159e-01	k: 646938	n:1260000
KS ci ratio: 1.294026e-01	ci left: 6.806770e-04	ci right 7.756105e-04	k: 916	n:1260000
DLST   1260000 perm   858 sec   (1469 perm/sec)   p_kst 7.269841e-04   p_cons 5.134429e-01   p_joint 7.269841e-04

Joint ci ratio: 1.289116e-01	ci left: 6.806511e-04	ci right 7.751932e-04	k: 923	n:1270000
Cons ci ratio: 3.386108e-03	ci left: 5.125775e-01	ci right 5.143169e-01	k: 652078	n:1270000
KS ci ratio: 1.289116e-01	ci left: 6.806511e-04	ci right 7.751932e-04	k: 923	n:1270000
DLST   1270000 perm   869 sec   (1462 perm/sec)   p_kst 7.267717e-04   p_cons 5.134472e-01   p_joint 7.267717e-04

Joint ci ratio: 1.284951e-01	ci left: 6.798700e-04	ci right 7.739753e-04	k: 929	n:1280000
Cons ci ratio: 3.373021e-03	ci left: 5.125564e-01	ci right 5.142889e-01	k: 657181	n:1280000
KS ci ratio: 1.284951e-01	ci left: 6.798700e-04	ci right 7.739753e-04	k: 929	n:1280000
DLST   1280000 perm   880 sec   (1454 perm/sec)   p_kst 7.257812e-04   p_cons 5.134227e-01   p_joint 7.257812e-04

Joint ci ratio: 1.280827e-01	ci left: 6.791016e-04	ci right 7.727759e-04	k: 935	n:1290000
Cons ci ratio: 3.360043e-03	ci left: 5.125417e-01	ci right 5.142675e-01	k: 662292	n:1290000
KS ci ratio: 1.280827e-01	ci left: 6.791016e-04	ci right 7.727759e-04	k: 935	n:1290000
DLST   1290000 perm   892 sec   (1447 perm/sec)   p_kst 7.248062e-04   p_cons 5.134047e-01   p_joint 7.248062e-04

Joint ci ratio: 1.279463e-01	ci left: 6.753669e-04	ci right 7.684193e-04	k: 937	n:1300000
Cons ci ratio: 3.347203e-03	ci left: 5.125289e-01	ci right 5.142480e-01	k: 667405	n:1300000
KS ci ratio: 1.279463e-01	ci left: 6.753669e-04	ci right 7.684193e-04	k: 937	n:1300000
DLST   1300000 perm   903 sec   (1439 perm/sec)   p_kst 7.207692e-04   p_cons 5.133885e-01   p_joint 7.207692e-04

Joint ci ratio: 1.274716e-01	ci left: 6.753842e-04	ci right 7.680676e-04	k: 944	n:1310000
Cons ci ratio: 3.334418e-03	ci left: 5.125299e-01	ci right 5.142425e-01	k: 672536	n:1310000
KS ci ratio: 1.274716e-01	ci left: 6.753842e-04	ci right 7.680676e-04	k: 944	n:1310000
DLST   1310000 perm   915 sec   (1431 perm/sec)   p_kst 7.206107e-04   p_cons 5.133863e-01   p_joint 7.206107e-04

Joint ci ratio: 1.268688e-01	ci left: 6.768690e-04	ci right 7.692838e-04	k: 953	n:1320000
Cons ci ratio: 3.322095e-03	ci left: 5.124833e-01	ci right 5.141894e-01	k: 677604	n:1320000
KS ci ratio: 1.268688e-01	ci left: 6.768690e-04	ci right 7.692838e-04	k: 953	n:1320000
DLST   1320000 perm   927 sec   (1424 perm/sec)   p_kst 7.219697e-04   p_cons 5.133364e-01   p_joint 7.219697e-04

Joint ci ratio: 1.264717e-01	ci left: 6.761480e-04	ci right 7.681539e-04	k: 959	n:1330000
Cons ci ratio: 3.309823e-03	ci left: 5.124501e-01	ci right 5.141498e-01	k: 682689	n:1330000
KS ci ratio: 1.264717e-01	ci left: 6.761480e-04	ci right 7.681539e-04	k: 959	n:1330000
DLST   1330000 perm   939 sec   (1417 perm/sec)   p_kst 7.210526e-04   p_cons 5.133000e-01   p_joint 7.210526e-04

Joint ci ratio: 1.261438e-01	ci left: 6.747156e-04	ci right 7.662707e-04	k: 964	n:1340000
Cons ci ratio: 3.297509e-03	ci left: 5.124444e-01	ci right 5.141377e-01	k: 687810	n:1340000
KS ci ratio: 1.261438e-01	ci left: 6.747156e-04	ci right 7.662707e-04	k: 964	n:1340000
DLST   1340000 perm   951 sec   (1410 perm/sec)   p_kst 7.194030e-04   p_cons 5.132910e-01   p_joint 7.194030e-04

Joint ci ratio: 1.255595e-01	ci left: 6.761745e-04	ci right 7.674710e-04	k: 973	n:1350000
Cons ci ratio: 3.285746e-03	ci left: 5.123757e-01	ci right 5.140627e-01	k: 692846	n:1350000
KS ci ratio: 1.255595e-01	ci left: 6.761745e-04	ci right 7.674710e-04	k: 973	n:1350000
DLST   1350000 perm   963 sec   (1402 perm/sec)   p_kst 7.207407e-04   p_cons 5.132193e-01   p_joint 7.207407e-04

Joint ci ratio: 1.250470e-01	ci left: 6.769006e-04	ci right 7.678944e-04	k: 981	n:1360000
Cons ci ratio: 3.273688e-03	ci left: 5.123721e-01	ci right 5.140529e-01	k: 697969	n:1360000
KS ci ratio: 1.250470e-01	ci left: 6.769006e-04	ci right 7.678944e-04	k: 981	n:1360000
DLST   1360000 perm   975 sec   (1395 perm/sec)   p_kst 7.213235e-04   p_cons 5.132125e-01   p_joint 7.213235e-04

Joint ci ratio: 1.247300e-01	ci left: 6.754953e-04	ci right 7.660530e-04	k: 986	n:1370000
Cons ci ratio: 3.261771e-03	ci left: 5.123670e-01	ci right 5.140417e-01	k: 703090	n:1370000
KS ci ratio: 1.247300e-01	ci left: 6.754953e-04	ci right 7.660530e-04	k: 986	n:1370000
DLST   1370000 perm   989 sec   (1386 perm/sec)   p_kst 7.197080e-04   p_cons 5.132044e-01   p_joint 7.197080e-04

Joint ci ratio: 1.244781e-01	ci left: 6.734086e-04	ci right 7.634908e-04	k: 990	n:1380000
Cons ci ratio: 3.250271e-03	ci left: 5.123179e-01	ci right 5.139864e-01	k: 708150	n:1380000
KS ci ratio: 1.244781e-01	ci left: 6.734086e-04	ci right 7.634908e-04	k: 990	n:1380000
DLST   1380000 perm   1002 sec   (1377 perm/sec)   p_kst 7.173913e-04   p_cons 5.131522e-01   p_joint 7.173913e-04

Joint ci ratio: 1.239787e-01	ci left: 6.741405e-04	ci right 7.639322e-04	k: 998	n:1390000
Cons ci ratio: 3.238337e-03	ci left: 5.123550e-01	ci right 5.140176e-01	k: 713329	n:1390000
KS ci ratio: 1.239787e-01	ci left: 6.741405e-04	ci right 7.639322e-04	k: 998	n:1390000
DLST   1390000 perm   1016 sec   (1368 perm/sec)   p_kst 7.179856e-04   p_cons 5.131863e-01   p_joint 7.179856e-04

Joint ci ratio: 1.236081e-01	ci left: 6.734782e-04	ci right 7.628939e-04	k: 1004	n:1400000
Cons ci ratio: 3.226400e-03	ci left: 5.124124e-01	ci right 5.140690e-01	k: 718537	n:1400000
KS ci ratio: 1.236081e-01	ci left: 6.734782e-04	ci right 7.628939e-04	k: 1004	n:1400000
DLST   1400000 perm   1028 sec   (1362 perm/sec)   p_kst 7.171429e-04   p_cons 5.132407e-01   p_joint 7.171429e-04

Joint ci ratio: 1.230582e-01	ci left: 6.748878e-04	ci right 7.640631e-04	k: 1013	n:1410000
Cons ci ratio: 3.214602e-03	ci left: 5.124675e-01	ci right 5.141182e-01	k: 723743	n:1410000
KS ci ratio: 1.230582e-01	ci left: 6.748878e-04	ci right 7.640631e-04	k: 1013	n:1410000
DLST   1410000 perm   1041 sec   (1354 perm/sec)   p_kst 7.184397e-04   p_cons 5.132929e-01   p_joint 7.184397e-04

Joint ci ratio: 1.225157e-01	ci left: 6.762785e-04	ci right 7.652149e-04	k: 1022	n:1420000
Cons ci ratio: 3.203272e-03	ci left: 5.124691e-01	ci right 5.141140e-01	k: 728874	n:1420000
KS ci ratio: 1.225157e-01	ci left: 6.762785e-04	ci right 7.652149e-04	k: 1022	n:1420000
DLST   1420000 perm   1054 sec   (1348 perm/sec)   p_kst 7.197183e-04   p_cons 5.132915e-01   p_joint 7.197183e-04

Joint ci ratio: 1.221580e-01	ci left: 6.756166e-04	ci right 7.641879e-04	k: 1028	n:1430000
Cons ci ratio: 3.191922e-03	ci left: 5.124923e-01	ci right 5.141314e-01	k: 734036	n:1430000
KS ci ratio: 1.221580e-01	ci left: 6.756166e-04	ci right 7.641879e-04	k: 1028	n:1430000
DLST   1430000 perm   1066 sec   (1341 perm/sec)   p_kst 7.188811e-04   p_cons 5.133119e-01   p_joint 7.188811e-04

Joint ci ratio: 1.215101e-01	ci left: 6.783310e-04	ci right 7.667526e-04	k: 1039	n:1440000
Cons ci ratio: 3.180719e-03	ci left: 5.125110e-01	ci right 5.141445e-01	k: 739192	n:1440000
KS ci ratio: 1.215101e-01	ci left: 6.783310e-04	ci right 7.667526e-04	k: 1039	n:1440000
DLST   1440000 perm   1080 sec   (1334 perm/sec)   p_kst 7.215278e-04   p_cons 5.133278e-01   p_joint 7.215278e-04

Joint ci ratio: 1.209876e-01	ci left: 6.796715e-04	ci right 7.678597e-04	k: 1048	n:1450000
Cons ci ratio: 3.169580e-03	ci left: 5.125378e-01	ci right 5.141656e-01	k: 744360	n:1450000
KS ci ratio: 1.209876e-01	ci left: 6.796715e-04	ci right 7.678597e-04	k: 1048	n:1450000
DLST   1450000 perm   1093 sec   (1327 perm/sec)   p_kst 7.227586e-04   p_cons 5.133517e-01   p_joint 7.227586e-04

Joint ci ratio: 1.208152e-01	ci left: 6.770088e-04	ci right 7.647173e-04	k: 1051	n:1460000
Cons ci ratio: 3.158722e-03	ci left: 5.125382e-01	ci right 5.141604e-01	k: 749490	n:1460000
KS ci ratio: 1.208152e-01	ci left: 6.770088e-04	ci right 7.647173e-04	k: 1051	n:1460000
DLST   1460000 perm   1106 sec   (1320 perm/sec)   p_kst 7.198630e-04   p_cons 5.133493e-01   p_joint 7.198630e-04

Joint ci ratio: 1.207007e-01	ci left: 6.737227e-04	ci right 7.609169e-04	k: 1053	n:1470000
Cons ci ratio: 3.148069e-03	ci left: 5.125236e-01	ci right 5.141403e-01	k: 754598	n:1470000
KS ci ratio: 1.207007e-01	ci left: 6.737227e-04	ci right 7.609169e-04	k: 1053	n:1470000
DLST   1470000 perm   1119 sec   (1313 perm/sec)   p_kst 7.163265e-04   p_cons 5.133320e-01   p_joint 7.163265e-04

Joint ci ratio: 1.203019e-01	ci left: 6.737577e-04	ci right 7.606478e-04	k: 1060	n:1480000
Cons ci ratio: 3.137561e-03	ci left: 5.125032e-01	ci right 5.141143e-01	k: 759697	n:1480000
KS ci ratio: 1.203019e-01	ci left: 6.737577e-04	ci right 7.606478e-04	k: 1060	n:1480000
DLST   1480000 perm   1133 sec   (1306 perm/sec)   p_kst 7.162162e-04   p_cons 5.133088e-01   p_joint 7.162162e-04

Joint ci ratio: 1.200759e-01	ci left: 6.718397e-04	ci right 7.583080e-04	k: 1064	n:1490000
Cons ci ratio: 3.127057e-03	ci left: 5.124991e-01	ci right 5.141049e-01	k: 764820	n:1490000
KS ci ratio: 1.200759e-01	ci left: 6.718397e-04	ci right 7.583080e-04	k: 1064	n:1490000
DLST   1490000 perm   1146 sec   (1300 perm/sec)   p_kst 7.140940e-04   p_cons 5.133020e-01   p_joint 7.140940e-04

Joint ci ratio: 1.196274e-01	ci left: 6.725342e-04	ci right 7.587458e-04	k: 1072	n:1500000
Cons ci ratio: 3.116471e-03	ci left: 5.125251e-01	ci right 5.141255e-01	k: 769988	n:1500000
KS ci ratio: 1.196274e-01	ci left: 6.725342e-04	ci right 7.587458e-04	k: 1072	n:1500000
DLST   1500000 perm   1160 sec   (1294 perm/sec)   p_kst 7.146667e-04   p_cons 5.133253e-01   p_joint 7.146667e-04

Joint ci ratio: 1.194607e-01	ci left: 6.700076e-04	ci right 7.557672e-04	k: 1075	n:1510000
Cons ci ratio: 3.106341e-03	ci left: 5.124945e-01	ci right 5.140896e-01	k: 775071	n:1510000
KS ci ratio: 1.194607e-01	ci left: 6.700076e-04	ci right 7.557672e-04	k: 1075	n:1510000
DLST   1510000 perm   1173 sec   (1287 perm/sec)   p_kst 7.119205e-04   p_cons 5.132921e-01   p_joint 7.119205e-04

Joint ci ratio: 1.191290e-01	ci left: 6.694292e-04	ci right 7.548601e-04	k: 1081	n:1520000
Cons ci ratio: 3.096106e-03	ci left: 5.124972e-01	ci right 5.140870e-01	k: 780204	n:1520000
KS ci ratio: 1.191290e-01	ci left: 6.694292e-04	ci right 7.548601e-04	k: 1081	n:1520000
DLST   1520000 perm   1187 sec   (1281 perm/sec)   p_kst 7.111842e-04   p_cons 5.132921e-01   p_joint 7.111842e-04

Joint ci ratio: 1.188002e-01	ci left: 6.688587e-04	ci right 7.539646e-04	k: 1087	n:1530000
Cons ci ratio: 3.085951e-03	ci left: 5.125031e-01	ci right 5.140877e-01	k: 785342	n:1530000
KS ci ratio: 1.188002e-01	ci left: 6.688587e-04	ci right 7.539646e-04	k: 1087	n:1530000
DLST   1530000 perm   1201 sec   (1274 perm/sec)   p_kst 7.104575e-04   p_cons 5.132954e-01   p_joint 7.104575e-04

Joint ci ratio: 1.184740e-01	ci left: 6.682960e-04	ci right 7.530804e-04	k: 1093	n:1540000
Cons ci ratio: 3.075683e-03	ci left: 5.125434e-01	ci right 5.141228e-01	k: 790533	n:1540000
KS ci ratio: 1.184740e-01	ci left: 6.682960e-04	ci right 7.530804e-04	k: 1093	n:1540000
DLST   1540000 perm   1214 sec   (1268 perm/sec)   p_kst 7.097403e-04   p_cons 5.133331e-01   p_joint 7.097403e-04

Joint ci ratio: 1.180968e-01	ci left: 6.683669e-04	ci right 7.528715e-04	k: 1100	n:1550000
Cons ci ratio: 3.065964e-03	ci left: 5.125102e-01	ci right 5.140846e-01	k: 795611	n:1550000
KS ci ratio: 1.180968e-01	ci left: 6.683669e-04	ci right 7.528715e-04	k: 1100	n:1550000
DLST   1550000 perm   1228 sec   (1262 perm/sec)   p_kst 7.096774e-04   p_cons 5.132974e-01   p_joint 7.096774e-04

Joint ci ratio: 1.176169e-01	ci left: 6.696817e-04	ci right 7.539846e-04	k: 1109	n:1560000
Cons ci ratio: 3.056035e-03	ci left: 5.125269e-01	ci right 5.140962e-01	k: 800766	n:1560000
KS ci ratio: 1.176169e-01	ci left: 6.696817e-04	ci right 7.539846e-04	k: 1109	n:1560000
DLST   1560000 perm   1242 sec   (1256 perm/sec)   p_kst 7.108974e-04   p_cons 5.133115e-01   p_joint 7.108974e-04

Joint ci ratio: 1.172478e-01	ci left: 6.697438e-04	ci right 7.537717e-04	k: 1116	n:1570000
Cons ci ratio: 3.046194e-03	ci left: 5.125446e-01	ci right 5.141089e-01	k: 805923	n:1570000
KS ci ratio: 1.172478e-01	ci left: 6.697438e-04	ci right 7.537717e-04	k: 1116	n:1570000
DLST   1570000 perm   1257 sec   (1249 perm/sec)   p_kst 7.108280e-04   p_cons 5.133268e-01   p_joint 7.108280e-04

Joint ci ratio: 1.167264e-01	ci left: 6.716489e-04	ci right 7.555152e-04	k: 1126	n:1580000
Cons ci ratio: 3.036533e-03	ci left: 5.125482e-01	ci right 5.141075e-01	k: 811058	n:1580000
KS ci ratio: 1.167264e-01	ci left: 6.716489e-04	ci right 7.555152e-04	k: 1126	n:1580000
DLST   1580000 perm   1270 sec   (1244 perm/sec)   p_kst 7.126582e-04   p_cons 5.133278e-01   p_joint 7.126582e-04

Joint ci ratio: 1.164169e-01	ci left: 6.710882e-04	ci right 7.546471e-04	k: 1132	n:1590000
Cons ci ratio: 3.026810e-03	ci left: 5.125769e-01	ci right 5.141313e-01	k: 816233	n:1590000
KS ci ratio: 1.164169e-01	ci left: 6.710882e-04	ci right 7.546471e-04	k: 1132	n:1590000
DLST   1590000 perm   1285 sec   (1238 perm/sec)   p_kst 7.119497e-04   p_cons 5.133541e-01   p_joint 7.119497e-04

Joint ci ratio: 1.162121e-01	ci left: 6.693212e-04	ci right 7.525033e-04	k: 1136	n:1600000
Cons ci ratio: 3.017678e-03	ci left: 5.125227e-01	ci right 5.140723e-01	k: 821276	n:1600000
KS ci ratio: 1.162121e-01	ci left: 6.693212e-04	ci right 7.525033e-04	k: 1136	n:1600000
DLST   1600000 perm   1299 sec   (1232 perm/sec)   p_kst 7.100000e-04   p_cons 5.132975e-01   p_joint 7.100000e-04

Joint ci ratio: 1.158054e-01	ci left: 6.699887e-04	ci right 7.529424e-04	k: 1144	n:1610000
Cons ci ratio: 3.008329e-03	ci left: 5.125189e-01	ci right 5.140637e-01	k: 826399	n:1610000
KS ci ratio: 1.158054e-01	ci left: 6.699887e-04	ci right 7.529424e-04	k: 1144	n:1610000
DLST   1610000 perm   1313 sec   (1226 perm/sec)   p_kst 7.105590e-04   p_cons 5.132913e-01   p_joint 7.105590e-04

Joint ci ratio: 1.154530e-01	ci left: 6.700489e-04	ci right 7.527405e-04	k: 1151	n:1620000
Cons ci ratio: 2.998866e-03	ci left: 5.125485e-01	ci right 5.140885e-01	k: 831576	n:1620000
KS ci ratio: 1.154530e-01	ci left: 6.700489e-04	ci right 7.527405e-04	k: 1151	n:1620000
DLST   1620000 perm   1328 sec   (1220 perm/sec)   p_kst 7.104938e-04   p_cons 5.133185e-01   p_joint 7.104938e-04

Joint ci ratio: 1.149056e-01	ci left: 6.724923e-04	ci right 7.550652e-04	k: 1162	n:1630000
Cons ci ratio: 2.989900e-03	ci left: 5.125097e-01	ci right 5.140449e-01	k: 836642	n:1630000
KS ci ratio: 1.149056e-01	ci left: 6.724923e-04	ci right 7.550652e-04	k: 1162	n:1630000
DLST   1630000 perm   1343 sec   (1214 perm/sec)   p_kst 7.128834e-04   p_cons 5.132773e-01   p_joint 7.128834e-04

Joint ci ratio: 1.145124e-01	ci left: 6.731298e-04	ci right 7.554791e-04	k: 1170	n:1640000
Cons ci ratio: 2.980770e-03	ci left: 5.125121e-01	ci right 5.140427e-01	k: 841775	n:1640000
KS ci ratio: 1.145124e-01	ci left: 6.731298e-04	ci right 7.554791e-04	k: 1170	n:1640000
DLST   1640000 perm   1357 sec   (1208 perm/sec)   p_kst 7.134146e-04   p_cons 5.132774e-01   p_joint 7.134146e-04

Joint ci ratio: 1.143174e-01	ci left: 6.714051e-04	ci right 7.533941e-04	k: 1174	n:1650000
Cons ci ratio: 2.972094e-03	ci left: 5.124522e-01	ci right 5.139781e-01	k: 846805	n:1650000
KS ci ratio: 1.143174e-01	ci left: 6.714051e-04	ci right 7.533941e-04	k: 1174	n:1650000
DLST   1650000 perm   1372 sec   (1203 perm/sec)   p_kst 7.115152e-04   p_cons 5.132152e-01   p_joint 7.115152e-04

Joint ci ratio: 1.138339e-01	ci left: 6.732127e-04	ci right 7.550514e-04	k: 1184	n:1660000
Cons ci ratio: 2.963061e-03	ci left: 5.124658e-01	ci right 5.139871e-01	k: 851956	n:1660000
KS ci ratio: 1.138339e-01	ci left: 6.732127e-04	ci right 7.550514e-04	k: 1184	n:1660000
DLST   1660000 perm   1386 sec   (1198 perm/sec)   p_kst 7.132530e-04   p_cons 5.132265e-01   p_joint 7.132530e-04

Joint ci ratio: 1.133565e-01	ci left: 6.749994e-04	ci right 7.566882e-04	k: 1194	n:1670000
Cons ci ratio: 2.954266e-03	ci left: 5.124530e-01	ci right 5.139697e-01	k: 857063	n:1670000
KS ci ratio: 1.133565e-01	ci left: 6.749994e-04	ci right 7.566882e-04	k: 1194	n:1670000
DLST   1670000 perm   1401 sec   (1192 perm/sec)   p_kst 7.149701e-04   p_cons 5.132114e-01   p_joint 7.149701e-04

Joint ci ratio: 1.131202e-01	ci left: 6.738735e-04	ci right 7.552446e-04	k: 1199	n:1680000
Cons ci ratio: 2.945734e-03	ci left: 5.124088e-01	ci right 5.139210e-01	k: 862117	n:1680000
KS ci ratio: 1.131202e-01	ci left: 6.738735e-04	ci right 7.552446e-04	k: 1199	n:1680000
DLST   1680000 perm   1416 sec   (1187 perm/sec)   p_kst 7.136905e-04   p_cons 5.131649e-01   p_joint 7.136905e-04

Joint ci ratio: 1.126983e-01	ci left: 6.750611e-04	ci right 7.562514e-04	k: 1208	n:1690000
Cons ci ratio: 2.937019e-03	ci left: 5.124088e-01	ci right 5.139166e-01	k: 867245	n:1690000
KS ci ratio: 1.126983e-01	ci left: 6.750611e-04	ci right 7.562514e-04	k: 1208	n:1690000
DLST   1690000 perm   1432 sec   (1181 perm/sec)   p_kst 7.147929e-04   p_cons 5.131627e-01   p_joint 7.147929e-04

Joint ci ratio: 1.124661e-01	ci left: 6.739485e-04	ci right 7.548269e-04	k: 1213	n:1700000
Cons ci ratio: 2.928542e-03	ci left: 5.123813e-01	ci right 5.138846e-01	k: 872326	n:1700000
KS ci ratio: 1.124661e-01	ci left: 6.739485e-04	ci right 7.548269e-04	k: 1213	n:1700000
DLST   1700000 perm   1446 sec   (1175 perm/sec)   p_kst 7.135294e-04   p_cons 5.131329e-01   p_joint 7.135294e-04

Joint ci ratio: 1.121892e-01	ci left: 6.734175e-04	ci right 7.540200e-04	k: 1219	n:1710000
Cons ci ratio: 2.919899e-03	ci left: 5.123950e-01	ci right 5.138939e-01	k: 877477	n:1710000
KS ci ratio: 1.121892e-01	ci left: 6.734175e-04	ci right 7.540200e-04	k: 1219	n:1710000
DLST   1710000 perm   1461 sec   (1170 perm/sec)   p_kst 7.128655e-04   p_cons 5.131444e-01   p_joint 7.128655e-04

Joint ci ratio: 1.119144e-01	ci left: 6.728928e-04	ci right 7.532223e-04	k: 1225	n:1720000
Cons ci ratio: 2.911238e-03	ci left: 5.124248e-01	ci right 5.139193e-01	k: 882656	n:1720000
KS ci ratio: 1.119144e-01	ci left: 6.728928e-04	ci right 7.532223e-04	k: 1225	n:1720000
DLST   1720000 perm   1477 sec   (1165 perm/sec)   p_kst 7.122093e-04   p_cons 5.131721e-01   p_joint 7.122093e-04

Joint ci ratio: 1.115962e-01	ci left: 6.729364e-04	ci right 7.530277e-04	k: 1232	n:1730000
Cons ci ratio: 2.903177e-03	ci left: 5.123641e-01	ci right 5.138543e-01	k: 887679	n:1730000
KS ci ratio: 1.115962e-01	ci left: 6.729364e-04	ci right 7.530277e-04	k: 1232	n:1730000
DLST   1730000 perm   1492 sec   (1160 perm/sec)   p_kst 7.121387e-04   p_cons 5.131092e-01   p_joint 7.121387e-04

Joint ci ratio: 1.109233e-01	ci left: 6.774499e-04	ci right 7.575603e-04	k: 1247	n:1740000
Cons ci ratio: 2.894626e-03	ci left: 5.124001e-01	ci right 5.138860e-01	k: 892869	n:1740000
KS ci ratio: 1.109233e-01	ci left: 6.774499e-04	ci right 7.575603e-04	k: 1247	n:1740000
DLST   1740000 perm   1507 sec   (1155 perm/sec)   p_kst 7.166667e-04   p_cons 5.131431e-01   p_joint 7.166667e-04

Joint ci ratio: 1.107461e-01	ci left: 6.758010e-04	ci right 7.555805e-04	k: 1251	n:1750000
Cons ci ratio: 2.886458e-03	ci left: 5.123826e-01	ci right 5.138642e-01	k: 897966	n:1750000
KS ci ratio: 1.107461e-01	ci left: 6.758010e-04	ci right 7.555805e-04	k: 1251	n:1750000
DLST   1750000 perm   1522 sec   (1150 perm/sec)   p_kst 7.148571e-04   p_cons 5.131234e-01   p_joint 7.148571e-04

Joint ci ratio: 1.105257e-01	ci left: 6.747235e-04	ci right 7.542070e-04	k: 1256	n:1760000
Cons ci ratio: 2.878250e-03	ci left: 5.123840e-01	ci right 5.138614e-01	k: 903096	n:1760000
KS ci ratio: 1.105257e-01	ci left: 6.747235e-04	ci right 7.542070e-04	k: 1256	n:1760000
DLST   1760000 perm   1538 sec   (1144 perm/sec)   p_kst 7.136364e-04   p_cons 5.131227e-01   p_joint 7.136364e-04

Joint ci ratio: 1.100451e-01	ci left: 6.769548e-04	ci right 7.563319e-04	k: 1267	n:1770000
Cons ci ratio: 2.870050e-03	ci left: 5.123961e-01	ci right 5.138694e-01	k: 908245	n:1770000
KS ci ratio: 1.100451e-01	ci left: 6.769548e-04	ci right 7.563319e-04	k: 1267	n:1770000
DLST   1770000 perm   1554 sec   (1139 perm/sec)   p_kst 7.158192e-04   p_cons 5.131328e-01   p_joint 7.158192e-04

Joint ci ratio: 1.097857e-01	ci left: 6.764298e-04	ci right 7.555463e-04	k: 1273	n:1780000
Cons ci ratio: 2.861572e-03	ci left: 5.124688e-01	ci right 5.139379e-01	k: 913502	n:1780000
KS ci ratio: 1.097857e-01	ci left: 6.764298e-04	ci right 7.555463e-04	k: 1273	n:1780000
DLST   1780000 perm   1570 sec   (1134 perm/sec)   p_kst 7.151685e-04   p_cons 5.132034e-01   p_joint 7.151685e-04

Joint ci ratio: 1.096138e-01	ci left: 6.748242e-04	ci right 7.536213e-04	k: 1277	n:1790000
Cons ci ratio: 2.853313e-03	ci left: 5.125155e-01	ci right 5.139805e-01	k: 918714	n:1790000
KS ci ratio: 1.096138e-01	ci left: 6.748242e-04	ci right 7.536213e-04	k: 1277	n:1790000
DLST   1790000 perm   1585 sec   (1129 perm/sec)   p_kst 7.134078e-04   p_cons 5.132480e-01   p_joint 7.134078e-04

Joint ci ratio: 1.092723e-01	ci left: 6.753980e-04	ci right 7.540006e-04	k: 1285	n:1800000
Cons ci ratio: 2.845703e-03	ci left: 5.124601e-01	ci right 5.139210e-01	k: 923743	n:1800000
KS ci ratio: 1.092723e-01	ci left: 6.753980e-04	ci right 7.540006e-04	k: 1285	n:1800000
DLST   1800000 perm   1601 sec   (1124 perm/sec)   p_kst 7.138889e-04   p_cons 5.131906e-01   p_joint 7.138889e-04

Joint ci ratio: 1.090184e-01	ci left: 6.748909e-04	ci right 7.532402e-04	k: 1291	n:1810000
Cons ci ratio: 2.837985e-03	ci left: 5.124351e-01	ci right 5.138920e-01	k: 928826	n:1810000
KS ci ratio: 1.090184e-01	ci left: 6.748909e-04	ci right 7.532402e-04	k: 1291	n:1810000
DLST   1810000 perm   1618 sec   (1119 perm/sec)   p_kst 7.132597e-04   p_cons 5.131635e-01   p_joint 7.132597e-04

Joint ci ratio: 1.086824e-01	ci left: 6.754587e-04	ci right 7.536167e-04	k: 1299	n:1820000
Cons ci ratio: 2.829990e-03	ci left: 5.124703e-01	ci right 5.139231e-01	k: 934018	n:1820000
KS ci ratio: 1.086824e-01	ci left: 6.754587e-04	ci right 7.536167e-04	k: 1299	n:1820000
DLST   1820000 perm   1633 sec   (1114 perm/sec)   p_kst 7.137363e-04   p_cons 5.131967e-01   p_joint 7.137363e-04

Joint ci ratio: 1.083909e-01	ci left: 6.754889e-04	ci right 7.534276e-04	k: 1306	n:1830000
Cons ci ratio: 2.822126e-03	ci left: 5.124936e-01	ci right 5.139425e-01	k: 939189	n:1830000
KS ci ratio: 1.083909e-01	ci left: 6.754889e-04	ci right 7.534276e-04	k: 1306	n:1830000
DLST   1830000 perm   1649 sec   (1110 perm/sec)   p_kst 7.136612e-04   p_cons 5.132180e-01   p_joint 7.136612e-04

Joint ci ratio: 1.080196e-01	ci left: 6.765767e-04	ci right 7.543564e-04	k: 1315	n:1840000
Cons ci ratio: 2.814478e-03	ci left: 5.124900e-01	ci right 5.139350e-01	k: 944311	n:1840000
KS ci ratio: 1.080196e-01	ci left: 6.765767e-04	ci right 7.543564e-04	k: 1315	n:1840000
DLST   1840000 perm   1665 sec   (1105 perm/sec)   p_kst 7.146739e-04   p_cons 5.132125e-01   p_joint 7.146739e-04

Joint ci ratio: 1.078151e-01	ci left: 6.755493e-04	ci right 7.530545e-04	k: 1320	n:1850000
Cons ci ratio: 2.806953e-03	ci left: 5.124757e-01	ci right 5.139167e-01	k: 949413	n:1850000
KS ci ratio: 1.078151e-01	ci left: 6.755493e-04	ci right 7.530545e-04	k: 1320	n:1850000
DLST   1850000 perm   1681 sec   (1100 perm/sec)   p_kst 7.135135e-04   p_cons 5.131962e-01   p_joint 7.135135e-04

Joint ci ratio: 1.074900e-01	ci left: 6.761026e-04	ci right 7.534226e-04	k: 1328	n:1860000
Cons ci ratio: 2.799466e-03	ci left: 5.124653e-01	ci right 5.139024e-01	k: 954522	n:1860000
KS ci ratio: 1.074900e-01	ci left: 6.761026e-04	ci right 7.534226e-04	k: 1328	n:1860000
DLST   1860000 perm   1698 sec   (1095 perm/sec)   p_kst 7.139785e-04   p_cons 5.131839e-01   p_joint 7.139785e-04

Joint ci ratio: 1.072885e-01	ci left: 6.750890e-04	ci right 7.521392e-04	k: 1333	n:1870000
Cons ci ratio: 2.792114e-03	ci left: 5.124416e-01	ci right 5.138749e-01	k: 959606	n:1870000
KS ci ratio: 1.072885e-01	ci left: 6.750890e-04	ci right 7.521392e-04	k: 1333	n:1870000
DLST   1870000 perm   1714 sec   (1091 perm/sec)   p_kst 7.128342e-04   p_cons 5.131583e-01   p_joint 7.128342e-04

Joint ci ratio: 1.070480e-01	ci left: 6.746041e-04	ci right 7.514155e-04	k: 1339	n:1880000
Cons ci ratio: 2.784416e-03	ci left: 5.124906e-01	ci right 5.139200e-01	k: 964826	n:1880000
KS ci ratio: 1.070480e-01	ci left: 6.746041e-04	ci right 7.514155e-04	k: 1339	n:1880000
DLST   1880000 perm   1731 sec   (1086 perm/sec)   p_kst 7.122340e-04   p_cons 5.132053e-01   p_joint 7.122340e-04

Joint ci ratio: 1.066903e-01	ci left: 6.756694e-04	ci right 7.523289e-04	k: 1348	n:1890000
Cons ci ratio: 2.777046e-03	ci left: 5.124914e-01	ci right 5.139171e-01	k: 969956	n:1890000
KS ci ratio: 1.066903e-01	ci left: 6.756694e-04	ci right 7.523289e-04	k: 1348	n:1890000
DLST   1890000 perm   1746 sec   (1082 perm/sec)   p_kst 7.132275e-04   p_cons 5.132042e-01   p_joint 7.132275e-04

Joint ci ratio: 1.062188e-01	ci left: 6.782609e-04	ci right 7.548531e-04	k: 1360	n:1900000
Cons ci ratio: 2.769673e-03	ci left: 5.125032e-01	ci right 5.139252e-01	k: 975107	n:1900000
KS ci ratio: 1.062188e-01	ci left: 6.782609e-04	ci right 7.548531e-04	k: 1360	n:1900000
DLST   1900000 perm   1763 sec   (1078 perm/sec)   p_kst 7.157895e-04   p_cons 5.132142e-01   p_joint 7.157895e-04

Joint ci ratio: 1.057534e-01	ci left: 6.808260e-04	ci right 7.573501e-04	k: 1372	n:1910000
Cons ci ratio: 2.762509e-03	ci left: 5.124877e-01	ci right 5.139059e-01	k: 980206	n:1910000
KS ci ratio: 1.057534e-01	ci left: 6.808260e-04	ci right 7.573501e-04	k: 1372	n:1910000
DLST   1910000 perm   1781 sec   (1072 perm/sec)   p_kst 7.183246e-04   p_cons 5.131969e-01   p_joint 7.183246e-04

Joint ci ratio: 1.055232e-01	ci left: 6.803225e-04	ci right 7.566131e-04	k: 1378	n:1920000
Cons ci ratio: 2.755550e-03	ci left: 5.124453e-01	ci right 5.138598e-01	k: 985253	n:1920000
KS ci ratio: 1.055232e-01	ci left: 6.803225e-04	ci right 7.566131e-04	k: 1378	n:1920000
DLST   1920000 perm   1799 sec   (1067 perm/sec)   p_kst 7.177083e-04   p_cons 5.131526e-01   p_joint 7.177083e-04

Joint ci ratio: 1.052564e-01	ci left: 6.803288e-04	ci right 7.564154e-04	k: 1385	n:1930000
Cons ci ratio: 2.748449e-03	ci left: 5.124386e-01	ci right 5.138494e-01	k: 990368	n:1930000
KS ci ratio: 1.052564e-01	ci left: 6.803288e-04	ci right 7.564154e-04	k: 1385	n:1930000
DLST   1930000 perm   1816 sec   (1063 perm/sec)   p_kst 7.176166e-04   p_cons 5.131440e-01   p_joint 7.176166e-04

Joint ci ratio: 1.050671e-01	ci left: 6.793315e-04	ci right 7.551614e-04	k: 1390	n:1940000
Cons ci ratio: 2.741389e-03	ci left: 5.124345e-01	ci right 5.138417e-01	k: 995488	n:1940000
KS ci ratio: 1.050671e-01	ci left: 6.793315e-04	ci right 7.551614e-04	k: 1390	n:1940000
DLST   1940000 perm   1834 sec   (1058 perm/sec)   p_kst 7.164948e-04   p_cons 5.131381e-01   p_joint 7.164948e-04

Joint ci ratio: 1.048037e-01	ci left: 6.793433e-04	ci right 7.549727e-04	k: 1397	n:1950000
Cons ci ratio: 2.734222e-03	ci left: 5.124597e-01	ci right 5.138633e-01	k: 1000665	n:1950000
KS ci ratio: 1.048037e-01	ci left: 6.793433e-04	ci right 7.549727e-04	k: 1397	n:1950000
DLST   1950000 perm   1850 sec   (1054 perm/sec)   p_kst 7.164103e-04   p_cons 5.131615e-01   p_joint 7.164103e-04

Joint ci ratio: 1.046168e-01	ci left: 6.783614e-04	ci right 7.537387e-04	k: 1402	n:1960000
Cons ci ratio: 2.727179e-03	ci left: 5.124724e-01	ci right 5.138724e-01	k: 1005818	n:1960000
KS ci ratio: 1.046168e-01	ci left: 6.783614e-04	ci right 7.537387e-04	k: 1402	n:1960000
DLST   1960000 perm   1868 sec   (1049 perm/sec)   p_kst 7.153061e-04   p_cons 5.131724e-01   p_joint 7.153061e-04

Joint ci ratio: 1.042459e-01	ci left: 6.798616e-04	ci right 7.551212e-04	k: 1412	n:1970000
Cons ci ratio: 2.720505e-03	ci left: 5.124271e-01	ci right 5.138236e-01	k: 1010857	n:1970000
KS ci ratio: 1.042459e-01	ci left: 6.798616e-04	ci right 7.551212e-04	k: 1412	n:1970000
DLST   1970000 perm   1885 sec   (1045 perm/sec)   p_kst 7.167513e-04   p_cons 5.131254e-01   p_joint 7.167513e-04

Joint ci ratio: 1.039887e-01	ci left: 6.798712e-04	ci right 7.549349e-04	k: 1419	n:1980000
Cons ci ratio: 2.713662e-03	ci left: 5.124222e-01	ci right 5.138151e-01	k: 1015975	n:1980000
KS ci ratio: 1.039887e-01	ci left: 6.798712e-04	ci right 7.549349e-04	k: 1419	n:1980000
DLST   1980000 perm   1903 sec   (1041 perm/sec)   p_kst 7.166667e-04   p_cons 5.131187e-01   p_joint 7.166667e-04

Joint ci ratio: 1.036606e-01	ci left: 6.808600e-04	ci right 7.557812e-04	k: 1428	n:1990000
Cons ci ratio: 2.706847e-03	ci left: 5.124219e-01	ci right 5.138113e-01	k: 1021102	n:1990000
KS ci ratio: 1.036606e-01	ci left: 6.808600e-04	ci right 7.557812e-04	k: 1428	n:1990000
DLST   1990000 perm   1920 sec   (1037 perm/sec)   p_kst 7.175879e-04   p_cons 5.131166e-01   p_joint 7.175879e-04

Joint ci ratio: 1.034798e-01	ci left: 6.798909e-04	ci right 7.545671e-04	k: 1433	n:2000000
Cons ci ratio: 2.699955e-03	ci left: 5.124450e-01	ci right 5.138309e-01	k: 1026276	n:2000000
KS ci ratio: 1.034798e-01	ci left: 6.798909e-04	ci right 7.545671e-04	k: 1433	n:2000000
DLST   2000000 perm   1937 sec   (1033 perm/sec)   p_kst 7.165000e-04   p_cons 5.131380e-01   p_joint 7.165000e-04

Joint ci ratio: 1.033359e-01	ci left: 6.784469e-04	ci right 7.528545e-04	k: 1437	n:2010000
Cons ci ratio: 2.693066e-03	ci left: 5.124774e-01	ci right 5.138599e-01	k: 1031469	n:2010000
KS ci ratio: 1.033359e-01	ci left: 6.784469e-04	ci right 7.528545e-04	k: 1437	n:2010000
DLST   2010000 perm   1954 sec   (1029 perm/sec)   p_kst 7.149254e-04   p_cons 5.131687e-01   p_joint 7.149254e-04

Joint ci ratio: 1.031567e-01	ci left: 6.774996e-04	ci right 7.516667e-04	k: 1442	n:2020000
Cons ci ratio: 2.686611e-03	ci left: 5.124382e-01	ci right 5.138172e-01	k: 1036518	n:2020000
KS ci ratio: 1.031567e-01	ci left: 6.774996e-04	ci right 7.516667e-04	k: 1442	n:2020000
DLST   2020000 perm   1970 sec   (1025 perm/sec)   p_kst 7.138614e-04   p_cons 5.131277e-01   p_joint 7.138614e-04

Joint ci ratio: 1.027657e-01	ci left: 6.794414e-04	ci right 7.535221e-04	k: 1453	n:2030000
Cons ci ratio: 2.679778e-03	ci left: 5.124787e-01	ci right 5.138543e-01	k: 1041728	n:2030000
KS ci ratio: 1.027657e-01	ci left: 6.794414e-04	ci right 7.535221e-04	k: 1453	n:2030000
DLST   2030000 perm   1988 sec   (1021 perm/sec)   p_kst 7.157635e-04   p_cons 5.131665e-01   p_joint 7.157635e-04

Joint ci ratio: 1.024491e-01	ci left: 6.804093e-04	ci right 7.543532e-04	k: 1462	n:2040000
Cons ci ratio: 2.673122e-03	ci left: 5.124952e-01	ci right 5.138675e-01	k: 1046890	n:2040000
KS ci ratio: 1.024491e-01	ci left: 6.804093e-04	ci right 7.543532e-04	k: 1462	n:2040000
DLST   2040000 perm   2005 sec   (1017 perm/sec)   p_kst 7.166667e-04   p_cons 5.131814e-01   p_joint 7.166667e-04

Joint ci ratio: 1.020660e-01	ci left: 6.823189e-04	ci right 7.561765e-04	k: 1473	n:2050000
Cons ci ratio: 2.666524e-03	ci left: 5.125102e-01	ci right 5.138791e-01	k: 1052049	n:2050000
KS ci ratio: 1.020660e-01	ci left: 6.823189e-04	ci right 7.561765e-04	k: 1473	n:2050000
DLST   2050000 perm   2022 sec   (1014 perm/sec)   p_kst 7.185366e-04   p_cons 5.131946e-01   p_joint 7.185366e-04

Joint ci ratio: 1.017901e-01	ci left: 6.827912e-04	ci right 7.564882e-04	k: 1481	n:2060000
Cons ci ratio: 2.659940e-03	ci left: 5.125313e-01	ci right 5.138968e-01	k: 1057221	n:2060000
KS ci ratio: 1.017901e-01	ci left: 6.827912e-04	ci right 7.564882e-04	k: 1481	n:2060000
DLST   2060000 perm   2041 sec   (1009 perm/sec)   p_kst 7.189320e-04   p_cons 5.132141e-01   p_joint 7.189320e-04

Joint ci ratio: 1.015506e-01	ci left: 6.827883e-04	ci right 7.563012e-04	k: 1488	n:2070000
Cons ci ratio: 2.653359e-03	ci left: 5.125609e-01	ci right 5.139231e-01	k: 1062411	n:2070000
KS ci ratio: 1.015506e-01	ci left: 6.827883e-04	ci right 7.563012e-04	k: 1488	n:2070000
DLST   2070000 perm   2059 sec   (1005 perm/sec)   p_kst 7.188406e-04   p_cons 5.132420e-01   p_joint 7.188406e-04

Joint ci ratio: 1.014145e-01	ci left: 6.813800e-04	ci right 7.546371e-04	k: 1492	n:2080000
Cons ci ratio: 2.647061e-03	ci left: 5.125460e-01	ci right 5.139050e-01	k: 1067509	n:2080000
KS ci ratio: 1.014145e-01	ci left: 6.813800e-04	ci right 7.546371e-04	k: 1492	n:2080000
DLST   2080000 perm   2077 sec   (1001 perm/sec)   p_kst 7.173077e-04   p_cons 5.132255e-01   p_joint 7.173077e-04

Joint ci ratio: 1.011776e-01	ci left: 6.813842e-04	ci right 7.544605e-04	k: 1499	n:2090000
Cons ci ratio: 2.640643e-03	ci left: 5.125623e-01	ci right 5.139180e-01	k: 1072672	n:2090000
KS ci ratio: 1.011776e-01	ci left: 6.813842e-04	ci right 7.544605e-04	k: 1499	n:2090000
DLST   2090000 perm   2096 sec   (997 perm/sec)   p_kst 7.172249e-04   p_cons 5.132402e-01   p_joint 7.172249e-04

Joint ci ratio: 1.010431e-01	ci left: 6.799961e-04	ci right 7.528207e-04	k: 1503	n:2100000
Cons ci ratio: 2.634475e-03	ci left: 5.125399e-01	ci right 5.138924e-01	k: 1077754	n:2100000
KS ci ratio: 1.010431e-01	ci left: 6.799961e-04	ci right 7.528207e-04	k: 1503	n:2100000
DLST   2100000 perm   2115 sec   (993 perm/sec)   p_kst 7.157143e-04   p_cons 5.132162e-01   p_joint 7.157143e-04

Joint ci ratio: 1.006755e-01	ci left: 6.818552e-04	ci right 7.545976e-04	k: 1514	n:2110000
Cons ci ratio: 2.628352e-03	ci left: 5.125173e-01	ci right 5.138666e-01	k: 1082835	n:2110000
KS ci ratio: 1.006755e-01	ci left: 6.818552e-04	ci right 7.545976e-04	k: 1514	n:2110000
DLST   2110000 perm   2133 sec   (989 perm/sec)   p_kst 7.175355e-04   p_cons 5.131919e-01   p_joint 7.175355e-04

Joint ci ratio: 1.003119e-01	ci left: 6.836972e-04	ci right 7.563571e-04	k: 1525	n:2120000
Cons ci ratio: 2.622291e-03	ci left: 5.124911e-01	ci right 5.138372e-01	k: 1087908	n:2120000
KS ci ratio: 1.003119e-01	ci left: 6.836972e-04	ci right 7.563571e-04	k: 1525	n:2120000
DLST   2120000 perm   2152 sec   (985 perm/sec)   p_kst 7.193396e-04   p_cons 5.131642e-01   p_joint 7.193396e-04

Joint ci ratio: 1.001807e-01	ci left: 6.823181e-04	ci right 7.547312e-04	k: 1529	n:2130000
Cons ci ratio: 2.616115e-03	ci left: 5.124952e-01	ci right 5.138381e-01	k: 1093045	n:2130000
KS ci ratio: 1.001807e-01	ci left: 6.823181e-04	ci right 7.547312e-04	k: 1529	n:2130000
DLST   2130000 perm   2170 sec   (982 perm/sec)   p_kst 7.178404e-04   p_cons 5.131667e-01   p_joint 7.178404e-04

Joint ci ratio: 9.998491e-02	ci left: 6.818633e-04	ci right 7.540783e-04	k: 1535	n:2140000
Cons ci ratio: 2.609924e-03	ci left: 5.125105e-01	ci right 5.138503e-01	k: 1098206	n:2140000
KS ci ratio: 9.998491e-02	ci left: 6.818633e-04	ci right 7.540783e-04	k: 1535	n:2140000
DLST   2140000 perm   2189 sec   (978 perm/sec)   p_kst 7.172897e-04   p_cons 5.131804e-01   p_joint 7.172897e-04

Outputting figure to mutsig2_images.part000000000050/DLST.2_1422_2140000_0.00071729_0.51318_0.00071729.png
                gene_name: DLST
               theta_stop: 0.100 
                    nperm: 2140000 
                     p_ks: 0.00072 
        ci_ks_bounds_left: 0.00068 
       ci_ks_bounds_right: 0.00075 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.00072 
     ci_joint_bounds_left: 0.00068 
    ci_joint_bounds_right: 0.00075 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000050
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 50 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4421885: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000051> was used as the working directory.
Started at Wed Oct 24 17:38:54 2012
Results reported at Wed Oct 24 17:53:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000051.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000051.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 51  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000051.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    788.32 sec.
    Max Memory :      5272 MB
    Max Swap   :      7706 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
51
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 51
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 51: processing genes 4525 - 4614
Calculating significance of each gene.
Using projection method.
4525	DLX5	1.640299e-02
4526	DLX6	1
4527	DMAP1	8.752253e-01
4528	DMBT1	9.999740e-01
4529	DMBX1	3.123375e-01
4530	DMC1	7.564852e-01
4531	DMD	1
4532	DMGDH	9.742053e-01
4533	DMKN	7.086388e-01
4534	DMP1	8.767868e-01
4535	DMPK	9.758690e-01
4536	DMRT1	1.321845e-01
4537	DMRT2	4.662009e-01
4538	DMRT3	1.307494e-02
4539	DMRTA1	8.856790e-01
4540	DMRTA2	2.860081e-01
4541	DMRTB1	2.227614e-01
4542	DMRTC2	9.190412e-01
4543	DMTF1	9.161342e-01
4544	DMWD	6.498694e-01
4545	DMXL1	7.034532e-01
4546	DMXL2	9.996173e-01
4547	DNA2	7.997015e-01
4548	DNAH1	1
4549	DNAH10	1
4550	DNAH11	1
4551	DNAH17	1.000000e+00
4552	DNAH2	1.000000e+00
4553	DNAH3	9.997495e-01
4554	DNAH5	1
4555	DNAH7	1
4556	DNAH8	1
4557	DNAH9	1.000000e+00
4558	DNAI1	7.096841e-01
4559	DNAI2	6.548775e-02
4560	DNAJA1	1
4561	DNAJA2	7.658026e-01
4562	DNAJA3	1
4563	DNAJA4	8.431097e-01
4564	DNAJB1	1
4565	DNAJB11	1
4566	DNAJB12	1
4567	DNAJB13	5.110906e-01
4568	DNAJB14	3.136870e-01
4569	DNAJB2	2.955369e-01
4570	DNAJB3	3.429629e-03
4571	DNAJB4	2.514349e-01
4572	DNAJB5	1
4573	DNAJB6	1
4574	DNAJB7	2.060545e-01
4575	DNAJB8	1
4576	DNAJB9	6.093424e-01
4577	DNAJC1	4.716046e-01
4578	DNAJC10	8.427706e-01
4579	DNAJC11	6.962550e-01
4580	DNAJC12	1
4581	DNAJC13	7.898825e-01
4582	DNAJC14	5.861199e-01
4583	DNAJC15	1
4584	DNAJC16	9.304080e-01
4585	DNAJC17	1
4586	DNAJC18	5.726485e-01
4587	DNAJC19	1
4588	DNAJC2	2.988715e-01
4589	DNAJC21	8.699792e-01
4590	DNAJC22	1
4591	DNAJC24	1
4592	DNAJC25	3.797354e-01
4593	DNAJC25-GNG10	1
4594	DNAJC27	1
4595	DNAJC28	1
4596	DNAJC3	5.746456e-01
4597	DNAJC30	1
4598	DNAJC4	1
4599	DNAJC5	1
4600	DNAJC5B	5.804481e-01
4601	DNAJC5G	2.048042e-01
4602	DNAJC6	4.969655e-01
4603	DNAJC7	8.189780e-01
4604	DNAJC8	4.647016e-01
4605	DNAJC9	1
4606	DNAL1	8.124917e-02
4607	DNAL4	1
4608	DNALI1	1
4609	DNASE1	7.035354e-01
In gene DNASE1L1 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 883     n = 1	mu =   5.35e-07
4610	DNASE1L1	3.375196e-01
4611	DNASE1L2	1
4612	DNASE1L3	3.668622e-01
4613	DNASE2	8.052849e-01
4614	DNASE2B	1
Done

Running MutSig 2:
Scatter job 51: processing genes 4525 - 4614
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DNAH9
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
Cons ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
DNAH9   10000 perm   5 sec   (2129 perm/sec)   p_kst 1.101000e-01   p_cons 8.707000e-01   p_joint 2.784000e-01

Joint ci ratio: 5.455142e-02	ci left: 1.995717e-01	ci right 2.108141e-01	k: 4103	n:20000
Cons ci ratio: 1.059463e-02	ci left: 8.678491e-01	ci right 8.771423e-01	k: 17451	n:20000
KS ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
DNAH9   20000 perm   12 sec   (1674 perm/sec)   p_kst 1.078500e-01   p_cons 8.725500e-01   p_joint 2.051500e-01

Outputting figure to mutsig2_images.part000000000051/DNAH9.51_13737_20000_0.10785_0.87255_0.20515.png
                gene_name: DNAH9
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
DMD
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
Cons ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
KS ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
DMD   10000 perm   4 sec   (2838 perm/sec)   p_kst 4.365000e-01   p_cons 4.872000e-01   p_joint 4.956000e-01

Outputting figure to mutsig2_images.part000000000051/DMD.41_11651_10000_0.4365_0.4872_0.4956.png
                gene_name: DMD
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
DNAH11
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
DNAH11   10000 perm   3 sec   (2962 perm/sec)   p_kst 8.080000e-02   p_cons 3.037000e-01   p_joint 1.442000e-01

Joint ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
Cons ci ratio: 4.327639e-02	ci left: 2.845616e-01	ci right 2.971992e-01	k: 5817	n:20000
KS ci ratio: 9.377357e-02	ci left: 7.656991e-02	ci right 8.415262e-02	k: 1606	n:20000
DNAH11   20000 perm   7 sec   (2784 perm/sec)   p_kst 8.030000e-02   p_cons 2.908500e-01   p_joint 1.215500e-01

Outputting figure to mutsig2_images.part000000000051/DNAH11.39_13901_20000_0.0803_0.29085_0.12155.png
                gene_name: DNAH11
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 5 percent done.
DNAH7
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
Cons ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
KS ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
DNAH7   10000 perm   3 sec   (2984 perm/sec)   p_kst 9.149000e-01   p_cons 3.791000e-01   p_joint 8.286000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH7.39_12335_10000_0.9149_0.3791_0.8286.png
                gene_name: DNAH7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 7 percent done.
DNAH5
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
Cons ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
KS ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
DNAH5   10000 perm   3 sec   (2929 perm/sec)   p_kst 4.522000e-01   p_cons 4.490000e-02   p_joint 1.086000e-01

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
KS ci ratio: 3.172582e-02	ci left: 4.259684e-01	ci right 4.397511e-01	k: 8657	n:20000
DNAH5   20000 perm   7 sec   (2733 perm/sec)   p_kst 4.328500e-01   p_cons 4.350000e-02   p_joint 1.180000e-01

Joint ci ratio: 8.009775e-02	ci left: 7.096438e-02	ci right 7.691845e-02	k: 2217	n:30000
Cons ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
KS ci ratio: 2.564876e-02	ci left: 4.321090e-01	ci right 4.433697e-01	k: 13132	n:30000
DNAH5   30000 perm   11 sec   (2662 perm/sec)   p_kst 4.377333e-01   p_cons 4.000000e-02   p_joint 7.390000e-02

Joint ci ratio: 5.915334e-02	ci left: 9.599117e-02	ci right 1.018672e-01	k: 3956	n:40000
Cons ci ratio: 9.668172e-02	ci left: 3.756333e-02	ci right 4.140389e-02	k: 1578	n:40000
KS ci ratio: 2.214787e-02	ci left: 4.343035e-01	ci right 4.440553e-01	k: 17567	n:40000
DNAH5   40000 perm   15 sec   (2617 perm/sec)   p_kst 4.391750e-01   p_cons 3.945000e-02   p_joint 9.890000e-02

Outputting figure to mutsig2_images.part000000000051/DNAH5.37_14191_40000_0.43917_0.03945_0.0989.png
                gene_name: DNAH5
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 9 percent done.
DNAH8
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
DNAH8   10000 perm   3 sec   (2969 perm/sec)   p_kst 2.466000e-01   p_cons 4.169000e-01   p_joint 2.463000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH8.35_13829_10000_0.2466_0.4169_0.2463.png
                gene_name: DNAH8
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 11 percent done.
DNAH3
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
KS ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
DNAH3   10000 perm   3 sec   (3274 perm/sec)   p_kst 7.200000e-03   p_cons 3.841000e-01   p_joint 3.850000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 3.448479e-02	ci left: 3.856737e-01	ci right 3.992575e-01	k: 7849	n:20000
KS ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
DNAH3   20000 perm   7 sec   (3028 perm/sec)   p_kst 7.250000e-03   p_cons 3.924500e-01   p_joint 1.590000e-02

Joint ci ratio: 1.600634e-01	ci left: 1.802935e-02	ci right 2.119799e-02	k: 587	n:30000
Cons ci ratio: 2.811339e-02	ci left: 3.876665e-01	ci right 3.987541e-01	k: 11796	n:30000
KS ci ratio: 2.708548e-01	ci left: 5.994619e-03	ci right 7.902745e-03	k: 207	n:30000
DNAH3   30000 perm   10 sec   (2941 perm/sec)   p_kst 6.900000e-03   p_cons 3.932000e-01   p_joint 1.956667e-02

Joint ci ratio: 1.681779e-01	ci left: 1.227219e-02	ci right 1.454927e-02	k: 535	n:40000
Cons ci ratio: 2.531976e-02	ci left: 3.699282e-01	ci right 3.794400e-01	k: 14987	n:40000
KS ci ratio: 2.309615e-01	ci left: 6.324192e-03	ci right 7.998554e-03	k: 285	n:40000
DNAH3   40000 perm   14 sec   (2880 perm/sec)   p_kst 7.125000e-03   p_cons 3.746750e-01   p_joint 1.337500e-02

Joint ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
Cons ci ratio: 2.261095e-02	ci left: 3.711729e-01	ci right 3.796815e-01	k: 18771	n:50000
KS ci ratio: 2.064334e-01	ci left: 6.420729e-03	ci right 7.917347e-03	k: 357	n:50000
DNAH3   50000 perm   18 sec   (2832 perm/sec)   p_kst 7.140000e-03   p_cons 3.754200e-01   p_joint 1.216000e-02

Joint ci ratio: 1.283137e-01	ci left: 1.433303e-02	ci right 1.631425e-02	k: 918	n:60000
Cons ci ratio: 2.063530e-02	ci left: 3.716729e-01	ci right 3.794391e-01	k: 22533	n:60000
KS ci ratio: 1.857658e-01	ci left: 6.682119e-03	ci right 8.066173e-03	k: 441	n:60000
DNAH3   60000 perm   21 sec   (2797 perm/sec)   p_kst 7.350000e-03   p_cons 3.755500e-01   p_joint 1.530000e-02

Joint ci ratio: 1.038263e-01	ci left: 1.891999e-02	ci right 2.100579e-02	k: 1396	n:70000
Cons ci ratio: 1.907938e-02	ci left: 3.725809e-01	ci right 3.797722e-01	k: 26332	n:70000
KS ci ratio: 1.736330e-01	ci left: 6.600702e-03	ci right 7.869232e-03	k: 505	n:70000
DNAH3   70000 perm   25 sec   (2765 perm/sec)   p_kst 7.214286e-03   p_cons 3.761714e-01   p_joint 1.994286e-02

Joint ci ratio: 9.477227e-02	ci left: 1.994431e-02	ci right 2.194065e-02	k: 1674	n:80000
Cons ci ratio: 1.784658e-02	ci left: 3.728289e-01	ci right 3.795550e-01	k: 30095	n:80000
KS ci ratio: 1.633154e-01	ci left: 6.565841e-03	ci right 7.745325e-03	k: 571	n:80000
DNAH3   80000 perm   29 sec   (2735 perm/sec)   p_kst 7.137500e-03   p_cons 3.761875e-01   p_joint 2.092500e-02

Joint ci ratio: 1.015079e-01	ci left: 1.547195e-02	ci right 1.713722e-02	k: 1466	n:90000
Cons ci ratio: 1.680323e-02	ci left: 3.736548e-01	ci right 3.799976e-01	k: 33914	n:90000
KS ci ratio: 1.558775e-01	ci left: 6.433648e-03	ci right 7.531824e-03	k: 627	n:90000
DNAH3   90000 perm   33 sec   (2705 perm/sec)   p_kst 6.966667e-03   p_cons 3.768222e-01   p_joint 1.628889e-02

Joint ci ratio: 9.312596e-02	ci left: 1.659860e-02	ci right 1.822957e-02	k: 1740	n:100000
Cons ci ratio: 1.594004e-02	ci left: 3.738451e-01	ci right 3.798620e-01	k: 37685	n:100000
KS ci ratio: 1.467994e-01	ci left: 6.560039e-03	ci right 7.608857e-03	k: 707	n:100000
DNAH3   100000 perm   37 sec   (2675 perm/sec)   p_kst 7.070000e-03   p_cons 3.768500e-01   p_joint 1.740000e-02

Joint ci ratio: 9.171353e-02	ci left: 1.558658e-02	ci right 1.709362e-02	k: 1796	n:110000
Cons ci ratio: 1.518077e-02	ci left: 3.745251e-01	ci right 3.802632e-01	k: 41513	n:110000
KS ci ratio: 1.396791e-01	ci left: 6.612311e-03	ci right 7.613940e-03	k: 781	n:110000
DNAH3   110000 perm   42 sec   (2647 perm/sec)   p_kst 7.100000e-03   p_cons 3.773909e-01   p_joint 1.632727e-02

Joint ci ratio: 8.669983e-02	ci left: 1.602327e-02	ci right 1.748355e-02	k: 2009	n:120000
Cons ci ratio: 1.454866e-02	ci left: 3.741902e-01	ci right 3.796824e-01	k: 45232	n:120000
KS ci ratio: 1.343759e-01	ci left: 6.568280e-03	ci right 7.522443e-03	k: 844	n:120000
DNAH3   120000 perm   46 sec   (2621 perm/sec)   p_kst 7.033333e-03   p_cons 3.769333e-01   p_joint 1.674167e-02

Joint ci ratio: 8.785068e-02	ci left: 1.442149e-02	ci right 1.575412e-02	k: 1960	n:130000
Cons ci ratio: 1.397869e-02	ci left: 3.742723e-01	ci right 3.795486e-01	k: 48998	n:130000
KS ci ratio: 1.291338e-01	ci left: 6.583748e-03	ci right 7.499987e-03	k: 914	n:130000
DNAH3   130000 perm   50 sec   (2595 perm/sec)   p_kst 7.030769e-03   p_cons 3.769077e-01   p_joint 1.507692e-02

Joint ci ratio: 8.630570e-02	ci left: 1.389430e-02	ci right 1.515449e-02	k: 2032	n:140000
Cons ci ratio: 1.347248e-02	ci left: 3.742892e-01	ci right 3.793731e-01	k: 52756	n:140000
KS ci ratio: 1.245247e-01	ci left: 6.590704e-03	ci right 7.472756e-03	k: 983	n:140000
DNAH3   140000 perm   54 sec   (2569 perm/sec)   p_kst 7.021429e-03   p_cons 3.768286e-01   p_joint 1.451429e-02

Joint ci ratio: 8.874631e-02	ci left: 1.226983e-02	ci right 1.341578e-02	k: 1925	n:150000
Cons ci ratio: 1.301535e-02	ci left: 3.743867e-01	ci right 3.792980e-01	k: 56526	n:150000
KS ci ratio: 1.200894e-01	ci left: 6.629574e-03	ci right 7.482981e-03	k: 1057	n:150000
DNAH3   150000 perm   59 sec   (2545 perm/sec)   p_kst 7.046667e-03   p_cons 3.768400e-01   p_joint 1.283333e-02

Joint ci ratio: 7.987138e-02	ci left: 1.423851e-02	ci right 1.542916e-02	k: 2372	n:160000
Cons ci ratio: 1.260549e-02	ci left: 3.743373e-01	ci right 3.790922e-01	k: 60274	n:160000
KS ci ratio: 1.163557e-01	ci left: 6.633724e-03	ci right 7.459290e-03	k: 1126	n:160000
DNAH3   160000 perm   63 sec   (2522 perm/sec)   p_kst 7.037500e-03   p_cons 3.767125e-01   p_joint 1.482500e-02

Joint ci ratio: 7.961802e-02	ci left: 1.349875e-02	ci right 1.462379e-02	k: 2389	n:170000
Cons ci ratio: 1.276177e-02	ci left: 3.546339e-01	ci right 3.591945e-01	k: 60675	n:170000
KS ci ratio: 1.127602e-01	ci left: 6.660618e-03	ci right 7.462213e-03	k: 1199	n:170000
DNAH3   170000 perm   68 sec   (2498 perm/sec)   p_kst 7.052941e-03   p_cons 3.569118e-01   p_joint 1.405294e-02

Joint ci ratio: 7.908142e-02	ci left: 1.293382e-02	ci right 1.400416e-02	k: 2423	n:180000
Cons ci ratio: 1.239774e-02	ci left: 3.548639e-01	ci right 3.592963e-01	k: 64274	n:180000
KS ci ratio: 1.094354e-01	ci left: 6.690277e-03	ci right 7.470169e-03	k: 1273	n:180000
DNAH3   180000 perm   73 sec   (2475 perm/sec)   p_kst 7.072222e-03   p_cons 3.570778e-01   p_joint 1.346111e-02

Joint ci ratio: 7.800888e-02	ci left: 1.260387e-02	ci right 1.363212e-02	k: 2491	n:190000
Cons ci ratio: 1.206567e-02	ci left: 3.549766e-01	ci right 3.592909e-01	k: 67855	n:190000
KS ci ratio: 1.065876e-01	ci left: 6.691505e-03	ci right 7.449968e-03	k: 1342	n:190000
DNAH3   190000 perm   77 sec   (2452 perm/sec)   p_kst 7.063158e-03   p_cons 3.571316e-01   p_joint 1.311053e-02

Joint ci ratio: 7.332181e-02	ci left: 1.357310e-02	ci right 1.461106e-02	k: 2817	n:200000
Cons ci ratio: 1.175777e-02	ci left: 3.551245e-01	ci right 3.593296e-01	k: 71445	n:200000
KS ci ratio: 1.040253e-01	ci left: 6.683105e-03	ci right 7.421292e-03	k: 1409	n:200000
DNAH3   200000 perm   82 sec   (2431 perm/sec)   p_kst 7.045000e-03   p_cons 3.572250e-01   p_joint 1.408500e-02

Joint ci ratio: 7.438367e-02	ci left: 1.256662e-02	ci right 1.354213e-02	k: 2740	n:210000
Cons ci ratio: 1.148111e-02	ci left: 3.549076e-01	ci right 3.590106e-01	k: 74961	n:210000
KS ci ratio: 1.017088e-01	ci left: 6.666419e-03	ci right 7.385385e-03	k: 1474	n:210000
DNAH3   210000 perm   87 sec   (2409 perm/sec)   p_kst 7.019048e-03   p_cons 3.569571e-01   p_joint 1.304762e-02

Joint ci ratio: 7.318550e-02	ci left: 1.240138e-02	ci right 1.334789e-02	k: 2831	n:220000
Cons ci ratio: 1.121521e-02	ci left: 3.550339e-01	ci right 3.590426e-01	k: 78548	n:220000
KS ci ratio: 9.937806e-02	ci left: 6.673582e-03	ci right 7.375865e-03	k: 1544	n:220000
DNAH3   220000 perm   92 sec   (2388 perm/sec)   p_kst 7.018182e-03   p_cons 3.570364e-01   p_joint 1.286818e-02

Outputting figure to mutsig2_images.part000000000051/DNAH3.25_12598_220000_0.0070182_0.35704_0.012868.png
                gene_name: DNAH3
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0070 
        ci_ks_bounds_left: 0.0067 
       ci_ks_bounds_right: 0.0074 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 12 percent done.
DNAH2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
Cons ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DNAH2   10000 perm   3 sec   (3335 perm/sec)   p_kst 1   p_cons 4.576000e-01   p_joint 7.282000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH2.20_13624_10000_1_0.4576_0.7282.png
                gene_name: DNAH2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 14 percent done.
DMBT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
DMBT1   10000 perm   2 sec   (4223 perm/sec)   p_kst 5.060000e-02   p_cons 1.660000e-02   p_joint 1.430000e-02

Joint ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
DMBT1   20000 perm   5 sec   (3852 perm/sec)   p_kst 5.170000e-02   p_cons 1.690000e-02   p_joint 2.545000e-02

Joint ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
Cons ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
KS ci ratio: 9.709255e-02	ci left: 4.902588e-02	ci right 5.406141e-02	k: 1545	n:30000
DMBT1   30000 perm   8 sec   (3715 perm/sec)   p_kst 5.150000e-02   p_cons 1.496667e-02   p_joint 1.560000e-02

Joint ci ratio: 2.083115e-01	ci left: 7.860632e-03	ci right 9.711739e-03	k: 350	n:40000
Cons ci ratio: 1.592312e-01	ci left: 1.373554e-02	ci right 1.613563e-02	k: 596	n:40000
KS ci ratio: 8.309783e-02	ci left: 5.050591e-02	ci right 5.490931e-02	k: 2107	n:40000
DMBT1   40000 perm   11 sec   (3633 perm/sec)   p_kst 5.267500e-02   p_cons 1.490000e-02   p_joint 8.750000e-03

Joint ci ratio: 1.411072e-01	ci left: 1.412651e-02	ci right 1.629031e-02	k: 759	n:50000
Cons ci ratio: 1.398971e-01	ci left: 1.437749e-02	ci right 1.655929e-02	k: 772	n:50000
KS ci ratio: 7.372162e-02	ci left: 5.154354e-02	ci right 5.550850e-02	k: 2675	n:50000
DMBT1   50000 perm   14 sec   (3565 perm/sec)   p_kst 5.350000e-02   p_cons 1.544000e-02   p_joint 1.518000e-02

Joint ci ratio: 1.379271e-01	ci left: 1.236644e-02	ci right 1.421441e-02	k: 796	n:60000
Cons ci ratio: 1.263049e-01	ci left: 1.480119e-02	ci right 1.681270e-02	k: 947	n:60000
KS ci ratio: 6.724534e-02	ci left: 5.179473e-02	ci right 5.541526e-02	k: 3215	n:60000
DMBT1   60000 perm   17 sec   (3507 perm/sec)   p_kst 5.358333e-02   p_cons 1.578333e-02   p_joint 1.326667e-02

Joint ci ratio: 1.172052e-01	ci left: 1.480595e-02	ci right 1.666308e-02	k: 1100	n:70000
Cons ci ratio: 1.179144e-01	ci left: 1.462561e-02	ci right 1.647200e-02	k: 1087	n:70000
KS ci ratio: 6.333456e-02	ci left: 5.024004e-02	ci right 5.354009e-02	k: 3631	n:70000
DMBT1   70000 perm   20 sec   (3452 perm/sec)   p_kst 5.187143e-02   p_cons 1.552857e-02   p_joint 1.571429e-02

Joint ci ratio: 1.566915e-01	ci left: 7.153989e-03	ci right 8.382112e-03	k: 620	n:80000
Cons ci ratio: 1.099594e-01	ci left: 1.477695e-02	ci right 1.650843e-02	k: 1250	n:80000
KS ci ratio: 5.961506e-02	ci left: 4.974436e-02	ci right 5.281329e-02	k: 4101	n:80000
DMBT1   80000 perm   24 sec   (3397 perm/sec)   p_kst 5.126250e-02   p_cons 1.562500e-02   p_joint 7.750000e-03

Joint ci ratio: 1.196330e-01	ci left: 1.108316e-02	ci right 1.250412e-02	k: 1060	n:90000
Cons ci ratio: 1.039855e-01	ci left: 1.473552e-02	ci right 1.636259e-02	k: 1398	n:90000
KS ci ratio: 5.631346e-02	ci left: 4.964838e-02	ci right 5.253620e-02	k: 4597	n:90000
DMBT1   90000 perm   27 sec   (3341 perm/sec)   p_kst 5.107778e-02   p_cons 1.553333e-02   p_joint 1.177778e-02

Joint ci ratio: 1.339611e-01	ci left: 7.920967e-03	ci right 9.067815e-03	k: 848	n:100000
Cons ci ratio: 9.934780e-02	ci left: 1.456784e-02	ci right 1.610046e-02	k: 1532	n:100000
KS ci ratio: 5.341203e-02	ci left: 4.974324e-02	ci right 5.248287e-02	k: 5110	n:100000
DMBT1   100000 perm   30 sec   (3295 perm/sec)   p_kst 5.110000e-02   p_cons 1.532000e-02   p_joint 8.480000e-03

Joint ci ratio: 1.291930e-01	ci left: 7.763507e-03	ci right 8.844476e-03	k: 912	n:110000
Cons ci ratio: 9.433603e-02	ci left: 1.472497e-02	ci right 1.619165e-02	k: 1699	n:110000
KS ci ratio: 5.092210e-02	ci left: 4.981500e-02	ci right 5.242691e-02	k: 5622	n:110000
DMBT1   110000 perm   34 sec   (3253 perm/sec)   p_kst 5.110909e-02   p_cons 1.544545e-02   p_joint 8.290909e-03

Joint ci ratio: 1.723641e-01	ci left: 3.921688e-03	ci right 4.669247e-03	k: 514	n:120000
Cons ci ratio: 9.040772e-02	ci left: 1.472715e-02	ci right 1.612974e-02	k: 1850	n:120000
KS ci ratio: 4.889796e-02	ci left: 4.958899e-02	ci right 5.208277e-02	k: 6099	n:120000
DMBT1   120000 perm   37 sec   (3213 perm/sec)   p_kst 5.082500e-02   p_cons 1.541667e-02   p_joint 4.283333e-03

Joint ci ratio: 8.069022e-02	ci left: 1.711078e-02	ci right 1.855700e-02	k: 2317	n:130000
Cons ci ratio: 8.063711e-02	ci left: 1.713340e-02	ci right 1.858053e-02	k: 2320	n:130000
KS ci ratio: 4.702966e-02	ci left: 4.953644e-02	ci right 5.192980e-02	k: 6594	n:130000
DMBT1   130000 perm   41 sec   (3177 perm/sec)   p_kst 5.072308e-02   p_cons 1.784615e-02   p_joint 1.782308e-02

Outputting figure to mutsig2_images.part000000000051/DMBT1.18_7454_130000_0.050723_0.017846_0.017823.png
                gene_name: DMBT1
               theta_stop: 0.081 
                    nperm: 130000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 16 percent done.
DNAH10
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
Cons ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
KS ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
DNAH10   10000 perm   3 sec   (3314 perm/sec)   p_kst 8.519000e-01   p_cons 1.335000e-01   p_joint 4.715000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH10.16_13728_10000_0.8519_0.1335_0.4715.png
                gene_name: DNAH10
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 18 percent done.
DMXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
Cons ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
KS ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
DMXL1   10000 perm   3 sec   (3974 perm/sec)   p_kst 9.980000e-02   p_cons 3.266000e-01   p_joint 1.719000e-01

Joint ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
Cons ci ratio: 4.129571e-02	ci left: 3.041401e-01	ci right 3.170150e-01	k: 6211	n:20000
KS ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
DMXL1   20000 perm   5 sec   (3643 perm/sec)   p_kst 1.015500e-01   p_cons 3.105500e-01   p_joint 1.313000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL1.15_9256_20000_0.10155_0.31055_0.1313.png
                gene_name: DMXL1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 19 percent done.
DNAH1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
Cons ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
KS ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
DNAH1   10000 perm   3 sec   (3534 perm/sec)   p_kst 8.550000e-02   p_cons 2.915000e-01   p_joint 1.884000e-01

Joint ci ratio: 6.294913e-02	ci left: 1.572635e-01	ci right 1.675348e-01	k: 3247	n:20000
Cons ci ratio: 4.319262e-02	ci left: 2.853564e-01	ci right 2.980042e-01	k: 5833	n:20000
KS ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
DNAH1   20000 perm   6 sec   (3263 perm/sec)   p_kst 8.540000e-02   p_cons 2.916500e-01   p_joint 1.623500e-01

Outputting figure to mutsig2_images.part000000000051/DNAH1.14_13106_20000_0.0854_0.29165_0.16235.png
                gene_name: DNAH1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
DMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
Cons ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
KS ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
DMXL2   10000 perm   3 sec   (3917 perm/sec)   p_kst 6.634000e-01   p_cons 7.821000e-01   p_joint 8.704000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL2.12_9286_10000_0.6634_0.7821_0.8704.png
                gene_name: DMXL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 23 percent done.
DNAJC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
Cons ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
KS ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
DNAJC13   10000 perm   2 sec   (4395 perm/sec)   p_kst 1.588000e-01   p_cons 7.507000e-01   p_joint 2.813000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC13.10_6952_10000_0.1588_0.7507_0.2813.png
                gene_name: DNAJC13
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 25 percent done.
DNAJC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
Cons ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
KS ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
DNAJC6   10000 perm   2 sec   (5291 perm/sec)   p_kst 8.353000e-01   p_cons 1.060000e-01   p_joint 4.329000e-01

Joint ci ratio: 3.608431e-02	ci left: 3.643490e-01	ci right 3.777885e-01	k: 7421	n:20000
Cons ci ratio: 7.836327e-02	ci left: 1.068256e-01	ci right 1.155878e-01	k: 2223	n:20000
KS ci ratio: 1.332905e-02	ci left: 8.067171e-01	ci right 8.175920e-01	k: 16244	n:20000
DNAJC6   20000 perm   4 sec   (4861 perm/sec)   p_kst 8.122000e-01   p_cons 1.111500e-01   p_joint 3.710500e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC6.10_2818_20000_0.8122_0.11115_0.37105.png
                gene_name: DNAJC6
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 26 percent done.
DMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
Cons ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
KS ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
DMP1   10000 perm   2 sec   (6545 perm/sec)   p_kst 6.060000e-01   p_cons 5.152000e-01   p_joint 8.380000e-01

Outputting figure to mutsig2_images.part000000000051/DMP1.9_1562_10000_0.606_0.5152_0.838.png
                gene_name: DMP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 28 percent done.
DNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
Cons ci ratio: 6.366378e-02	ci left: 2.660670e-01	ci right 2.836643e-01	k: 2748	n:10000
KS ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
DNAI2   10000 perm   2 sec   (5542 perm/sec)   p_kst 5.882000e-01   p_cons 2.748000e-01   p_joint 4.941000e-01

Outputting figure to mutsig2_images.part000000000051/DNAI2.9_1866_10000_0.5882_0.2748_0.4941.png
                gene_name: DNAI2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 30 percent done.
DMRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
Cons ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
KS ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
DMRT3   10000 perm   2 sec   (6242 perm/sec)   p_kst 2.205000e-01   p_cons 7.464000e-01   p_joint 3.400000e-01

Outputting figure to mutsig2_images.part000000000051/DMRT3.8_1427_10000_0.2205_0.7464_0.34.png
                gene_name: DMRT3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 32 percent done.
DNAJC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
Cons ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
KS ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
DNAJC10   10000 perm   2 sec   (4734 perm/sec)   p_kst 4.480000e-02   p_cons 1.868000e-01   p_joint 9.350000e-02

Joint ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
Cons ci ratio: 5.604133e-02	ci left: 1.910125e-01	ci right 2.020759e-01	k: 3930	n:20000
KS ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
DNAJC10   20000 perm   5 sec   (4408 perm/sec)   p_kst 4.610000e-02   p_cons 1.965000e-01   p_joint 6.490000e-02

Joint ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
Cons ci ratio: 4.573120e-02	ci left: 1.922148e-01	ci right 2.012440e-01	k: 5901	n:30000
KS ci ratio: 1.028705e-01	ci left: 4.378695e-02	ci right 4.856811e-02	k: 1384	n:30000
DNAJC10   30000 perm   7 sec   (4398 perm/sec)   p_kst 4.613333e-02   p_cons 1.967000e-01   p_joint 5.206667e-02

Joint ci ratio: 8.561386e-02	ci left: 4.766398e-02	ci right 5.195167e-02	k: 1991	n:40000
Cons ci ratio: 4.130960e-02	ci left: 1.799405e-01	ci right 1.875555e-01	k: 7349	n:40000
KS ci ratio: 8.855387e-02	ci left: 4.462828e-02	ci right 4.878785e-02	k: 1867	n:40000
DNAJC10   40000 perm   9 sec   (4360 perm/sec)   p_kst 4.667500e-02   p_cons 1.837250e-01   p_joint 4.977500e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC10.7_2470_40000_0.046675_0.18372_0.049775.png
                gene_name: DNAJC10
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 33 percent done.
DLX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
DLX5   10000 perm   1 sec   (6670 perm/sec)   p_kst 2.851000e-01   p_cons 4.535000e-01   p_joint 3.835000e-01

Outputting figure to mutsig2_images.part000000000051/DLX5.6_882_10000_0.2851_0.4535_0.3835.png
                gene_name: DLX5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 35 percent done.
DNAH17
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023461e-02	ci left: 4.770586e-01	ci right 4.967491e-01	k: 4869	n:10000
Cons ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
KS ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
DNAH17   10000 perm   3 sec   (3486 perm/sec)   p_kst 4.091000e-01   p_cons 3.355000e-01   p_joint 4.869000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH17.6_13709_10000_0.4091_0.3355_0.4869.png
                gene_name: DNAH17
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 37 percent done.
DNAJC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
Cons ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
KS ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
DNAJC1   10000 perm   2 sec   (6253 perm/sec)   p_kst 5.895000e-01   p_cons 2.070000e-02   p_joint 1.064000e-01

Joint ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
Cons ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
KS ci ratio: 2.356433e-02	ci left: 5.735745e-01	ci right 5.873021e-01	k: 11609	n:20000
DNAJC1   20000 perm   4 sec   (5572 perm/sec)   p_kst 5.804500e-01   p_cons 1.995000e-02   p_joint 8.920000e-02

Joint ci ratio: 6.987964e-02	ci left: 9.160626e-02	ci right 9.827242e-02	k: 2847	n:30000
Cons ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
KS ci ratio: 1.931770e-02	ci left: 5.728882e-01	ci right 5.840966e-01	k: 17355	n:30000
DNAJC1   30000 perm   6 sec   (5322 perm/sec)   p_kst 5.785000e-01   p_cons 2.046667e-02   p_joint 9.490000e-02

Joint ci ratio: 5.445222e-02	ci left: 1.115680e-01	ci right 1.178380e-01	k: 4587	n:40000
Cons ci ratio: 1.329372e-01	ci left: 1.985904e-02	ci right 2.271105e-02	k: 850	n:40000
KS ci ratio: 1.679075e-02	ci left: 5.718652e-01	ci right 5.815737e-01	k: 23069	n:40000
DNAJC1   40000 perm   8 sec   (5155 perm/sec)   p_kst 5.767250e-01   p_cons 2.125000e-02   p_joint 1.146750e-01

Joint ci ratio: 6.040650e-02	ci left: 7.532868e-02	ci right 8.004049e-02	k: 3883	n:50000
Cons ci ratio: 1.191751e-01	ci left: 1.991639e-02	ci right 2.245963e-02	k: 1058	n:50000
KS ci ratio: 1.516650e-02	ci left: 5.675689e-01	ci right 5.762628e-01	k: 28596	n:50000
DNAJC1   50000 perm   10 sec   (5031 perm/sec)   p_kst 5.719200e-01   p_cons 2.116000e-02   p_joint 7.766000e-02

Joint ci ratio: 4.845054e-02	ci left: 9.597838e-02	ci right 1.007605e-01	k: 5901	n:60000
Cons ci ratio: 1.050440e-01	ci left: 2.149053e-02	ci right 2.388928e-02	k: 1360	n:60000
KS ci ratio: 1.387586e-02	ci left: 5.668612e-01	ci right 5.747986e-01	k: 34250	n:60000
DNAJC1   60000 perm   12 sec   (4912 perm/sec)   p_kst 5.708333e-01   p_cons 2.266667e-02   p_joint 9.835000e-02

Joint ci ratio: 4.475447e-02	ci left: 9.655660e-02	ci right 1.009910e-01	k: 6913	n:70000
Cons ci ratio: 9.538854e-02	ci left: 2.243230e-02	ci right 2.469314e-02	k: 1648	n:70000
KS ci ratio: 1.284372e-02	ci left: 5.672663e-01	ci right 5.746135e-01	k: 39966	n:70000
DNAJC1   70000 perm   15 sec   (4813 perm/sec)   p_kst 5.709429e-01   p_cons 2.354286e-02   p_joint 9.875714e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC1.6_1713_70000_0.57094_0.023543_0.098757.png
                gene_name: DNAJC1
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 39 percent done.
DNAJB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.944141e-02	ci left: 7.946610e-01	ci right 8.103624e-01	k: 8026	n:10000
KS ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
DNAJB3   10000 perm   1 sec   (7248 perm/sec)   p_kst 8.692000e-01   p_cons 8.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJB3.5_442_10000_0.8692_0.8026_1.png
                gene_name: DNAJB3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
DNAJC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 4.644672e-02	ci left: 4.062155e-01	ci right 4.256335e-01	k: 4159	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
DNAJC16   10000 perm   2 sec   (5907 perm/sec)   p_kst 1.820000e-02   p_cons 4.159000e-01   p_joint 7.310000e-02

Joint ci ratio: 1.377751e-01	ci left: 3.621414e-02	ci right 4.162097e-02	k: 777	n:20000
Cons ci ratio: 3.265057e-02	ci left: 4.119497e-01	ci right 4.256739e-01	k: 8376	n:20000
KS ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
DNAJC16   20000 perm   4 sec   (5460 perm/sec)   p_kst 1.800000e-02   p_cons 4.188000e-01   p_joint 3.885000e-02

Joint ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
Cons ci ratio: 2.663800e-02	ci left: 4.136078e-01	ci right 4.248078e-01	k: 12576	n:30000
KS ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
DNAJC16   30000 perm   6 sec   (5254 perm/sec)   p_kst 1.856667e-02   p_cons 4.192000e-01   p_joint 3.360000e-02

Joint ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
Cons ci ratio: 2.308020e-02	ci left: 4.141334e-01	ci right 4.238284e-01	k: 16759	n:40000
KS ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
DNAJC16   40000 perm   8 sec   (5112 perm/sec)   p_kst 1.890000e-02   p_cons 4.189750e-01   p_joint 4.120000e-02

Joint ci ratio: 9.840553e-02	ci left: 2.924431e-02	ci right 3.229050e-02	k: 1537	n:50000
Cons ci ratio: 2.057078e-02	ci left: 4.163676e-01	ci right 4.250416e-01	k: 21035	n:50000
KS ci ratio: 1.266475e-01	ci left: 1.760814e-02	ci right 2.000818e-02	k: 939	n:50000
DNAJC16   50000 perm   10 sec   (4987 perm/sec)   p_kst 1.878000e-02   p_cons 4.207000e-01   p_joint 3.074000e-02

Joint ci ratio: 8.094518e-02	ci left: 3.609196e-02	ci right 3.915297e-02	k: 2256	n:60000
Cons ci ratio: 1.878372e-02	ci left: 4.166123e-01	ci right 4.245287e-01	k: 25234	n:60000
KS ci ratio: 1.157176e-01	ci left: 1.767966e-02	ci right 1.986724e-02	k: 1125	n:60000
DNAJC16   60000 perm   12 sec   (4884 perm/sec)   p_kst 1.875000e-02   p_cons 4.205667e-01   p_joint 3.760000e-02

Joint ci ratio: 8.105967e-02	ci left: 3.101658e-02	ci right 3.365094e-02	k: 2262	n:70000
Cons ci ratio: 1.737038e-02	ci left: 4.174672e-01	ci right 4.247965e-01	k: 29479	n:70000
KS ci ratio: 1.073701e-01	ci left: 1.768152e-02	ci right 1.970152e-02	k: 1307	n:70000
DNAJC16   70000 perm   15 sec   (4786 perm/sec)   p_kst 1.867143e-02   p_cons 4.211286e-01   p_joint 3.231429e-02

Joint ci ratio: 8.008875e-02	ci left: 2.790932e-02	ci right 3.025000e-02	k: 2325	n:80000
Cons ci ratio: 1.626869e-02	ci left: 4.171010e-01	ci right 4.239548e-01	k: 33642	n:80000
KS ci ratio: 9.998860e-02	ci left: 1.790665e-02	ci right 1.980347e-02	k: 1507	n:80000
DNAJC16   80000 perm   17 sec   (4697 perm/sec)   p_kst 1.883750e-02   p_cons 4.205250e-01   p_joint 2.906250e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC16.5_2405_80000_0.018838_0.42052_0.029063.png
                gene_name: DNAJC16
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 42 percent done.
DMGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
Cons ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
KS ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
DMGDH   10000 perm   2 sec   (5371 perm/sec)   p_kst 5.454000e-01   p_cons 2.944000e-01   p_joint 5.214000e-01

Outputting figure to mutsig2_images.part000000000051/DMGDH.4_2665_10000_0.5454_0.2944_0.5214.png
                gene_name: DMGDH
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 44 percent done.
DMRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
Cons ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
KS ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
DMRT1   10000 perm   2 sec   (6106 perm/sec)   p_kst 3.608000e-01   p_cons 3.126000e-01   p_joint 4.592000e-01

Outputting figure to mutsig2_images.part000000000051/DMRT1.4_1142_10000_0.3608_0.3126_0.4592.png
                gene_name: DMRT1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 46 percent done.
DMRTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
KS ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
DMRTB1   10000 perm   2 sec   (6330 perm/sec)   p_kst 6.795000e-01   p_cons 1.162000e-01   p_joint 3.683000e-01

Joint ci ratio: 4.039245e-02	ci left: 3.136361e-01	ci right 3.266162e-01	k: 6402	n:20000
Cons ci ratio: 7.937067e-02	ci left: 1.043692e-01	ci right 1.130449e-01	k: 2173	n:20000
KS ci ratio: 1.893557e-02	ci left: 6.752937e-01	ci right 6.882534e-01	k: 13636	n:20000
DMRTB1   20000 perm   4 sec   (5650 perm/sec)   p_kst 6.818000e-01   p_cons 1.086500e-01   p_joint 3.201000e-01

Outputting figure to mutsig2_images.part000000000051/DMRTB1.4_1045_20000_0.6818_0.10865_0.3201.png
                gene_name: DMRTB1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 47 percent done.
DMWD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
Cons ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
DMWD   10000 perm   1 sec   (7347 perm/sec)   p_kst 2.295000e-01   p_cons 2.774000e-01   p_joint 3.792000e-01

Outputting figure to mutsig2_images.part000000000051/DMWD.4_2045_10000_0.2295_0.2774_0.3792.png
                gene_name: DMWD
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
DNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
DNA2   10000 perm   2 sec   (5215 perm/sec)   p_kst 3.409000e-01   p_cons 3.375000e-01   p_joint 4.614000e-01

Outputting figure to mutsig2_images.part000000000051/DNA2.4_3525_10000_0.3409_0.3375_0.4614.png
                gene_name: DNA2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 51 percent done.
DNAJC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
Cons ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
DNAJC11   10000 perm   2 sec   (6061 perm/sec)   p_kst 1.258000e-01   p_cons 3.767000e-01   p_joint 2.850000e-01

Joint ci ratio: 5.316103e-02	ci left: 2.080359e-01	ci right 2.194475e-01	k: 4274	n:20000
Cons ci ratio: 3.603797e-02	ci left: 3.649467e-01	ci right 3.783906e-01	k: 7433	n:20000
KS ci ratio: 7.477795e-02	ci left: 1.162646e-01	ci right 1.253460e-01	k: 2415	n:20000
DNAJC11   20000 perm   4 sec   (5651 perm/sec)   p_kst 1.207500e-01   p_cons 3.716500e-01   p_joint 2.137000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC11.4_1744_20000_0.12075_0.37165_0.2137.png
                gene_name: DNAJC11
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 53 percent done.
DNAJC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
DNAJC14   10000 perm   2 sec   (5795 perm/sec)   p_kst 3.871000e-01   p_cons 4.422000e-01   p_joint 4.649000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC14.4_2133_10000_0.3871_0.4422_0.4649.png
                gene_name: DNAJC14
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
DNAJC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
Cons ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
KS ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
DNAJC2   10000 perm   2 sec   (5763 perm/sec)   p_kst 4.852000e-01   p_cons 4.364000e-01   p_joint 6.383000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC2.4_1934_10000_0.4852_0.4364_0.6383.png
                gene_name: DNAJC2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 56 percent done.
DNAJC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
Cons ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
KS ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
DNAJC21   10000 perm   2 sec   (6144 perm/sec)   p_kst 2.751000e-01   p_cons 4.430000e-02   p_joint 1.154000e-01

Joint ci ratio: 5.595277e-02	ci left: 1.915072e-01	ci right 2.025811e-01	k: 3940	n:20000
Cons ci ratio: 1.276157e-01	ci left: 4.216829e-02	ci right 4.796490e-02	k: 900	n:20000
KS ci ratio: 4.441533e-02	ci left: 2.740329e-01	ci right 2.865310e-01	k: 5605	n:20000
DNAJC21   20000 perm   4 sec   (5612 perm/sec)   p_kst 2.802500e-01   p_cons 4.500000e-02   p_joint 1.970000e-01

Joint ci ratio: 4.750753e-02	ci left: 1.805540e-01	ci right 1.893737e-01	k: 5548	n:30000
Cons ci ratio: 1.024832e-01	ci left: 4.411210e-02	ci right 4.890955e-02	k: 1394	n:30000
KS ci ratio: 3.653354e-02	ci left: 2.722394e-01	ci right 2.824038e-01	k: 8319	n:30000
DNAJC21   30000 perm   6 sec   (5316 perm/sec)   p_kst 2.773000e-01   p_cons 4.646667e-02   p_joint 1.849333e-01

Joint ci ratio: 5.107129e-02	ci left: 1.250867e-01	ci right 1.316673e-01	k: 5134	n:40000
Cons ci ratio: 8.559125e-02	ci left: 4.768847e-02	ci right 5.197718e-02	k: 1992	n:40000
KS ci ratio: 3.212009e-02	ci left: 2.669469e-01	ci right 2.756863e-01	k: 10852	n:40000
DNAJC21   40000 perm   8 sec   (5069 perm/sec)   p_kst 2.713000e-01   p_cons 4.980000e-02   p_joint 1.283500e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC21.4_1783_40000_0.2713_0.0498_0.12835.png
                gene_name: DNAJC21
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 58 percent done.
DNAJC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
Cons ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
DNAJC5B   10000 perm   1 sec   (7203 perm/sec)   p_kst 6.138000e-01   p_cons 3.993000e-01   p_joint 6.818000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC5B.4_616_10000_0.6138_0.3993_0.6818.png
                gene_name: DNAJC5B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 60 percent done.
DMBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
KS ci ratio: 2.415377e-02	ci left: 7.159319e-01	ci right 7.335370e-01	k: 7248	n:10000
DMBX1   10000 perm   2 sec   (6323 perm/sec)   p_kst 7.248000e-01   p_cons 4.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DMBX1.3_1165_10000_0.7248_0.4347_1.png
                gene_name: DMBX1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
DMPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
DMPK   10000 perm   2 sec   (5869 perm/sec)   p_kst 4.200000e-02   p_cons 3.088000e-01   p_joint 4.450000e-02

Joint ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
Cons ci ratio: 4.055539e-02	ci left: 3.118957e-01	ci right 3.248571e-01	k: 6367	n:20000
KS ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
DMPK   20000 perm   4 sec   (5222 perm/sec)   p_kst 3.865000e-02   p_cons 3.183500e-01   p_joint 6.605000e-02

Joint ci ratio: 7.919529e-02	ci left: 7.250221e-02	ci right 7.851364e-02	k: 2264	n:30000
Cons ci ratio: 3.401137e-02	ci left: 3.016501e-01	ci right 3.121207e-01	k: 9206	n:30000
KS ci ratio: 1.154599e-01	ci left: 3.485986e-02	ci right 3.916373e-02	k: 1109	n:30000
DMPK   30000 perm   6 sec   (5188 perm/sec)   p_kst 3.696667e-02   p_cons 3.068667e-01   p_joint 7.546667e-02

Joint ci ratio: 8.049075e-02	ci left: 5.371755e-02	ci right 5.824718e-02	k: 2238	n:40000
Cons ci ratio: 2.879138e-02	ci left: 3.120924e-01	ci right 3.212343e-01	k: 12666	n:40000
KS ci ratio: 9.988648e-02	ci left: 3.522014e-02	ci right 3.894745e-02	k: 1482	n:40000
DMPK   40000 perm   8 sec   (5125 perm/sec)   p_kst 3.705000e-02   p_cons 3.166500e-01   p_joint 5.595000e-02

Outputting figure to mutsig2_images.part000000000051/DMPK.3_2147_40000_0.03705_0.31665_0.05595.png
                gene_name: DMPK
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 63 percent done.
DMRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
Cons ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
DMRT2   10000 perm   1 sec   (6942 perm/sec)   p_kst 1.150000e-02   p_cons 4.680000e-02   p_joint 8.500000e-03

Joint ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
Cons ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
KS ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
DMRT2   20000 perm   3 sec   (6091 perm/sec)   p_kst 1.200000e-02   p_cons 4.920000e-02   p_joint 4.200000e-03

Joint ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
Cons ci ratio: 9.973935e-02	ci left: 4.651929e-02	ci right 5.143519e-02	k: 1468	n:30000
KS ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
DMRT2   30000 perm   5 sec   (5781 perm/sec)   p_kst 1.216667e-02   p_cons 4.893333e-02   p_joint 1.033333e-03

Joint ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
Cons ci ratio: 8.604660e-02	ci left: 4.719868e-02	ci right 5.146705e-02	k: 1972	n:40000
KS ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
DMRT2   40000 perm   7 sec   (5575 perm/sec)   p_kst 1.222500e-02   p_cons 4.930000e-02   p_joint 1.900000e-03

Joint ci ratio: 3.821471e-01	ci left: 1.699817e-03	ci right 2.519713e-03	k: 104	n:50000
Cons ci ratio: 7.706536e-02	ci left: 4.730079e-02	ci right 5.111176e-02	k: 2459	n:50000
KS ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
DMRT2   50000 perm   9 sec   (5421 perm/sec)   p_kst 1.220000e-02   p_cons 4.918000e-02   p_joint 2.080000e-03

Joint ci ratio: 3.560012e-01	ci left: 1.658468e-03	ci right 2.391041e-03	k: 120	n:60000
Cons ci ratio: 6.759024e-02	ci left: 5.128631e-02	ci right 5.489040e-02	k: 3184	n:60000
KS ci ratio: 1.442993e-01	ci left: 1.127264e-02	ci right 1.304168e-02	k: 728	n:60000
DMRT2   60000 perm   11 sec   (5292 perm/sec)   p_kst 1.213333e-02   p_cons 5.306667e-02   p_joint 2.000000e-03

Joint ci ratio: 3.286229e-01	ci left: 1.695799e-03	ci right 2.375113e-03	k: 141	n:70000
Cons ci ratio: 6.270876e-02	ci left: 5.121104e-02	ci right 5.454043e-02	k: 3700	n:70000
KS ci ratio: 1.331602e-01	ci left: 1.141371e-02	ci right 1.305567e-02	k: 855	n:70000
DMRT2   70000 perm   14 sec   (5178 perm/sec)   p_kst 1.221429e-02   p_cons 5.285714e-02   p_joint 2.014286e-03

Joint ci ratio: 1.687490e-01	ci left: 6.134420e-03	ci right 7.276795e-03	k: 535	n:80000
Cons ci ratio: 5.868593e-02	ci left: 5.127264e-02	ci right 5.438489e-02	k: 4225	n:80000
KS ci ratio: 1.245785e-01	ci left: 1.146289e-02	ci right 1.299779e-02	k: 977	n:80000
DMRT2   80000 perm   16 sec   (5070 perm/sec)   p_kst 1.221250e-02   p_cons 5.281250e-02   p_joint 6.687500e-03

Joint ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
Cons ci ratio: 5.544210e-02	ci left: 5.116141e-02	ci right 5.408973e-02	k: 4735	n:90000
KS ci ratio: 1.173593e-01	ci left: 1.152536e-02	ci right 1.297300e-02	k: 1101	n:90000
DMRT2   90000 perm   18 sec   (4970 perm/sec)   p_kst 1.223333e-02   p_cons 5.261111e-02   p_joint 4.355556e-03

Joint ci ratio: 1.875394e-01	ci left: 3.942007e-03	ci right 4.767149e-03	k: 434	n:100000
Cons ci ratio: 5.273054e-02	ci left: 5.098739e-02	ci right 5.375864e-02	k: 5236	n:100000
KS ci ratio: 1.105825e-01	ci left: 1.172329e-02	ci right 1.310521e-02	k: 1240	n:100000
DMRT2   100000 perm   21 sec   (4878 perm/sec)   p_kst 1.240000e-02   p_cons 5.236000e-02   p_joint 4.340000e-03

Joint ci ratio: 1.827870e-01	ci left: 3.783013e-03	ci right 4.552582e-03	k: 457	n:110000
Cons ci ratio: 5.032596e-02	ci left: 5.095570e-02	ci right 5.359524e-02	k: 5749	n:110000
KS ci ratio: 1.050126e-01	ci left: 1.185177e-02	ci right 1.317412e-02	k: 1375	n:110000
DMRT2   110000 perm   23 sec   (4788 perm/sec)   p_kst 1.250000e-02   p_cons 5.226364e-02   p_joint 4.154545e-03

Joint ci ratio: 1.780061e-01	ci left: 3.666668e-03	ci right 4.390957e-03	k: 482	n:120000
Cons ci ratio: 4.819046e-02	ci left: 5.099760e-02	ci right 5.352409e-02	k: 6270	n:120000
KS ci ratio: 1.013689e-01	ci left: 1.168402e-02	ci right 1.293972e-02	k: 1476	n:120000
DMRT2   120000 perm   26 sec   (4702 perm/sec)   p_kst 1.230000e-02   p_cons 5.225000e-02   p_joint 4.016667e-03

Joint ci ratio: 1.727297e-01	ci left: 3.605248e-03	ci right 4.294093e-03	k: 512	n:130000
Cons ci ratio: 4.630920e-02	ci left: 5.102746e-02	ci right 5.345410e-02	k: 6790	n:130000
KS ci ratio: 9.705746e-02	ci left: 1.179047e-02	ci right 1.300065e-02	k: 1610	n:130000
DMRT2   130000 perm   28 sec   (4625 perm/sec)   p_kst 1.238462e-02   p_cons 5.223077e-02   p_joint 3.938462e-03

Joint ci ratio: 1.539933e-01	ci left: 4.252266e-03	ci right 4.968490e-03	k: 644	n:140000
Cons ci ratio: 4.461625e-02	ci left: 5.109004e-02	ci right 5.342854e-02	k: 7315	n:140000
KS ci ratio: 9.388161e-02	ci left: 1.172221e-02	ci right 1.288384e-02	k: 1721	n:140000
DMRT2   140000 perm   31 sec   (4543 perm/sec)   p_kst 1.229286e-02   p_cons 5.225000e-02   p_joint 4.600000e-03

Joint ci ratio: 1.602496e-01	ci left: 3.654862e-03	ci right 4.297878e-03	k: 595	n:150000
Cons ci ratio: 4.316320e-02	ci left: 5.099392e-02	ci right 5.325010e-02	k: 7817	n:150000
KS ci ratio: 9.047511e-02	ci left: 1.180046e-02	ci right 1.292517e-02	k: 1853	n:150000
DMRT2   150000 perm   34 sec   (4470 perm/sec)   p_kst 1.235333e-02   p_cons 5.211333e-02   p_joint 3.966667e-03

Joint ci ratio: 2.235108e-01	ci left: 1.704368e-03	ci right 2.138998e-03	k: 306	n:160000
Cons ci ratio: 4.175352e-02	ci left: 5.112130e-02	ci right 5.330746e-02	k: 8353	n:160000
KS ci ratio: 8.754839e-02	ci left: 1.183291e-02	ci right 1.292236e-02	k: 1979	n:160000
DMRT2   160000 perm   36 sec   (4397 perm/sec)   p_kst 1.236875e-02   p_cons 5.220625e-02   p_joint 1.912500e-03

Joint ci ratio: 1.561354e-01	ci left: 3.405628e-03	ci right 3.987970e-03	k: 627	n:170000
Cons ci ratio: 4.039446e-02	ci left: 5.142701e-02	ci right 5.355299e-02	k: 8922	n:170000
KS ci ratio: 8.552813e-02	ci left: 1.168355e-02	ci right 1.273318e-02	k: 2074	n:170000
DMRT2   170000 perm   39 sec   (4329 perm/sec)   p_kst 1.220000e-02   p_cons 5.248235e-02   p_joint 3.688235e-03

Joint ci ratio: 2.016782e-01	ci left: 1.883248e-03	ci right 2.310819e-03	k: 376	n:180000
Cons ci ratio: 3.926488e-02	ci left: 5.143557e-02	ci right 5.350110e-02	k: 9443	n:180000
KS ci ratio: 8.287168e-02	ci left: 1.176869e-02	ci right 1.279155e-02	k: 2209	n:180000
DMRT2   180000 perm   42 sec   (4260 perm/sec)   p_kst 1.227222e-02   p_cons 5.246111e-02   p_joint 2.088889e-03

Joint ci ratio: 1.121460e-01	ci left: 6.031002e-03	ci right 6.752604e-03	k: 1213	n:190000
Cons ci ratio: 3.819674e-02	ci left: 5.151699e-02	ci right 5.352827e-02	k: 9978	n:190000
KS ci ratio: 8.048304e-02	ci left: 1.183501e-02	ci right 1.283259e-02	k: 2342	n:190000
DMRT2   190000 perm   45 sec   (4197 perm/sec)   p_kst 1.232632e-02   p_cons 5.251579e-02   p_joint 6.384211e-03

Joint ci ratio: 1.119786e-01	ci left: 5.748844e-03	ci right 6.435590e-03	k: 1217	n:200000
Cons ci ratio: 3.726744e-02	ci left: 5.144227e-02	ci right 5.340073e-02	k: 10483	n:200000
KS ci ratio: 7.832173e-02	ci left: 1.188526e-02	ci right 1.285895e-02	k: 2473	n:200000
DMRT2   200000 perm   48 sec   (4137 perm/sec)   p_kst 1.236500e-02   p_cons 5.241500e-02   p_joint 6.085000e-03

Joint ci ratio: 1.313421e-01	ci left: 3.946307e-03	ci right 4.505610e-03	k: 886	n:210000
Cons ci ratio: 3.635571e-02	ci left: 5.150268e-02	ci right 5.341446e-02	k: 11015	n:210000
KS ci ratio: 7.831307e-02	ci left: 1.132851e-02	ci right 1.225647e-02	k: 2475	n:210000
DMRT2   210000 perm   51 sec   (4081 perm/sec)   p_kst 1.178571e-02   p_cons 5.245238e-02   p_joint 4.219048e-03

Joint ci ratio: 1.324081e-01	ci left: 3.705362e-03	ci right 4.235112e-03	k: 872	n:220000
Cons ci ratio: 3.551427e-02	ci left: 5.154010e-02	ci right 5.340808e-02	k: 11543	n:220000
KS ci ratio: 7.649620e-02	ci left: 1.134402e-02	ci right 1.225073e-02	k: 2594	n:220000
DMRT2   220000 perm   55 sec   (4023 perm/sec)   p_kst 1.179091e-02   p_cons 5.246818e-02   p_joint 3.963636e-03

Joint ci ratio: 1.278680e-01	ci left: 3.809269e-03	ci right 4.333785e-03	k: 935	n:230000
Cons ci ratio: 3.470896e-02	ci left: 5.163079e-02	ci right 5.345877e-02	k: 12084	n:230000
KS ci ratio: 7.485602e-02	ci left: 1.134134e-02	ci right 1.222755e-02	k: 2709	n:230000
DMRT2   230000 perm   58 sec   (3968 perm/sec)   p_kst 1.177826e-02   p_cons 5.253913e-02   p_joint 4.065217e-03

Joint ci ratio: 1.254142e-01	ci left: 3.799831e-03	ci right 4.312260e-03	k: 972	n:240000
Cons ci ratio: 3.404723e-02	ci left: 5.144983e-02	ci right 5.323600e-02	k: 12561	n:240000
KS ci ratio: 7.323836e-02	ci left: 1.136362e-02	ci right 1.223157e-02	k: 2830	n:240000
DMRT2   240000 perm   61 sec   (3914 perm/sec)   p_kst 1.179167e-02   p_cons 5.233750e-02   p_joint 4.050000e-03

Joint ci ratio: 8.232337e-02	ci left: 8.617827e-03	ci right 9.361623e-03	k: 2246	n:250000
Cons ci ratio: 3.329952e-02	ci left: 5.164479e-02	ci right 5.339760e-02	k: 13129	n:250000
KS ci ratio: 7.189394e-02	ci left: 1.132930e-02	ci right 1.217808e-02	k: 2937	n:250000
DMRT2   250000 perm   65 sec   (3862 perm/sec)   p_kst 1.174800e-02   p_cons 5.251600e-02   p_joint 8.984000e-03

Outputting figure to mutsig2_images.part000000000051/DMRT2.3_1755_250000_0.011748_0.052516_0.008984.png
                gene_name: DMRT2
               theta_stop: 0.082 
                    nperm: 250000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0094 

Current progress: 65 percent done.
DMRTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
DMRTA1   10000 perm   1 sec   (7237 perm/sec)   p_kst 3.832000e-01   p_cons 3.037000e-01   p_joint 3.268000e-01

Outputting figure to mutsig2_images.part000000000051/DMRTA1.3_1523_10000_0.3832_0.3037_0.3268.png
                gene_name: DMRTA1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 67 percent done.
DNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.074776e-01	ci left: 1.110554e-01	ci right 1.237684e-01	k: 1173	n:10000
Cons ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
KS ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
DNAI1   10000 perm   2 sec   (6344 perm/sec)   p_kst 7.480000e-02   p_cons 2.117000e-01   p_joint 1.173000e-01

Joint ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
Cons ci ratio: 5.339142e-02	ci left: 2.066002e-01	ci right 2.179836e-01	k: 4245	n:20000
KS ci ratio: 9.620311e-02	ci left: 7.295085e-02	ci right 8.037278e-02	k: 1532	n:20000
DNAI1   20000 perm   4 sec   (5368 perm/sec)   p_kst 7.660000e-02   p_cons 2.122500e-01   p_joint 8.855000e-02

Outputting figure to mutsig2_images.part000000000051/DNAI1.3_2180_20000_0.0766_0.21225_0.08855.png
                gene_name: DNAI1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 68 percent done.
DNAJA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
Cons ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
KS ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
DNAJA2   10000 perm   2 sec   (6395 perm/sec)   p_kst 2.521000e-01   p_cons 1.535000e-01   p_joint 2.622000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJA2.3_1275_10000_0.2521_0.1535_0.2622.png
                gene_name: DNAJA2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 70 percent done.
DNAJB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
KS ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
DNAJB14   10000 perm   2 sec   (6441 perm/sec)   p_kst 9.154000e-01   p_cons 4.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJB14.3_1172_10000_0.9154_0.4258_1.png
                gene_name: DNAJB14
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
DNAJB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
DNAJB2   10000 perm   2 sec   (6584 perm/sec)   p_kst 6.223000e-01   p_cons 9.192000e-01   p_joint 9.297000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB2.3_1022_10000_0.6223_0.9192_0.9297.png
                gene_name: DNAJB2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 74 percent done.
DNAJB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
Cons ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
DNAJB4   10000 perm   1 sec   (7318 perm/sec)   p_kst 1.428000e-01   p_cons 2.209000e-01   p_joint 1.873000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB4.3_1026_10000_0.1428_0.2209_0.1873.png
                gene_name: DNAJB4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
DNAJB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
Cons ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
KS ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
DNAJB8   10000 perm   1 sec   (7703 perm/sec)   p_kst 5.718000e-01   p_cons 3.282000e-01   p_joint 9.481000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB8.3_703_10000_0.5718_0.3282_0.9481.png
                gene_name: DNAJB8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 77 percent done.
DNAJC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
Cons ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
KS ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
DNAJC3   10000 perm   1 sec   (7163 perm/sec)   p_kst 1.421000e-01   p_cons 3.164000e-01   p_joint 1.972000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC3.3_1563_10000_0.1421_0.3164_0.1972.png
                gene_name: DNAJC3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
DNASE1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
Cons ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
KS ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
DNASE1L3   10000 perm   1 sec   (7673 perm/sec)   p_kst 4.161000e-01   p_cons 2.593000e-01   p_joint 2.776000e-01

Outputting figure to mutsig2_images.part000000000051/DNASE1L3.3_950_10000_0.4161_0.2593_0.2776.png
                gene_name: DNASE1L3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 81 percent done.
DMKN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
DMKN   10000 perm   2 sec   (6299 perm/sec)   p_kst 4.031000e-01   p_cons 4.069000e-01   p_joint 4.953000e-01

Outputting figure to mutsig2_images.part000000000051/DMKN.2_1812_10000_0.4031_0.4069_0.4953.png
                gene_name: DMKN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 82 percent done.
DMTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 2.164788e-02	ci left: 7.578789e-01	ci right 7.745658e-01	k: 7663	n:10000
DMTF1   10000 perm   2 sec   (6175 perm/sec)   p_kst 7.663000e-01   p_cons 3.427000e-01   p_joint 7.912000e-01

Outputting figure to mutsig2_images.part000000000051/DMTF1.2_2347_10000_0.7663_0.3427_0.7912.png
                gene_name: DMTF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 84 percent done.
DNAJB13
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 86 percent done.
DNAJB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
Cons ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KS ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
DNAJB7   10000 perm   1 sec   (6792 perm/sec)   p_kst 3.596000e-01   p_cons 4.166000e-01   p_joint 4.882000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB7.2_934_10000_0.3596_0.4166_0.4882.png
                gene_name: DNAJB7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 88 percent done.
DNAJC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
DNAJC18   10000 perm   2 sec   (6611 perm/sec)   p_kst 4.697000e-01   p_cons 5.762000e-01   p_joint 7.207000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC18.2_1109_10000_0.4697_0.5762_0.7207.png
                gene_name: DNAJC18
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 89 percent done.
DNAJC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
DNAJC25   10000 perm   2 sec   (6644 perm/sec)   p_kst 4.916000e-01   p_cons 1.590000e-02   p_joint 7.890000e-02

Joint ci ratio: 1.169324e-01	ci left: 5.008111e-02	ci right 5.634959e-02	k: 1063	n:20000
Cons ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
KS ci ratio: 2.864666e-02	ci left: 4.765521e-01	ci right 4.904527e-01	k: 9670	n:20000
DNAJC25   20000 perm   3 sec   (5986 perm/sec)   p_kst 4.835000e-01   p_cons 1.535000e-02   p_joint 5.315000e-02

Joint ci ratio: 9.408279e-02	ci left: 5.212081e-02	ci right 5.729919e-02	k: 1640	n:30000
Cons ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
KS ci ratio: 2.346087e-02	ci left: 4.763310e-01	ci right 4.876724e-01	k: 14460	n:30000
DNAJC25   30000 perm   5 sec   (5742 perm/sec)   p_kst 4.820000e-01   p_cons 1.553333e-02   p_joint 5.466667e-02

Joint ci ratio: 8.880349e-02	ci left: 4.438357e-02	ci right 4.853259e-02	k: 1857	n:40000
Cons ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
KS ci ratio: 2.041281e-02	ci left: 4.747683e-01	ci right 4.845847e-01	k: 19187	n:40000
DNAJC25   40000 perm   7 sec   (5646 perm/sec)   p_kst 4.796750e-01   p_cons 1.512500e-02   p_joint 4.642500e-02

Joint ci ratio: 7.906319e-02	ci left: 4.500430e-02	ci right 4.872854e-02	k: 2342	n:50000
Cons ci ratio: 1.434243e-01	ci left: 1.366336e-02	ci right 1.579353e-02	k: 735	n:50000
KS ci ratio: 1.823215e-02	ci left: 4.759920e-01	ci right 4.847703e-01	k: 24019	n:50000
DNAJC25   50000 perm   9 sec   (5553 perm/sec)   p_kst 4.803800e-01   p_cons 1.470000e-02   p_joint 4.684000e-02

Joint ci ratio: 7.215575e-02	ci left: 4.518914e-02	ci right 4.858820e-02	k: 2812	n:60000
Cons ci ratio: 1.299755e-01	ci left: 1.396191e-02	ci right 1.591875e-02	k: 895	n:60000
KS ci ratio: 1.668029e-02	ci left: 4.752788e-01	ci right 4.832899e-01	k: 28757	n:60000
DNAJC25   60000 perm   11 sec   (5462 perm/sec)   p_kst 4.792833e-01   p_cons 1.491667e-02   p_joint 4.686667e-02

Joint ci ratio: 9.040312e-02	ci left: 2.497337e-02	ci right 2.735184e-02	k: 1830	n:70000
Cons ci ratio: 1.209423e-01	ci left: 1.389077e-02	ci right 1.569264e-02	k: 1034	n:70000
KS ci ratio: 1.540762e-02	ci left: 4.767212e-01	ci right 4.841376e-01	k: 33630	n:70000
DNAJC25   70000 perm   13 sec   (5358 perm/sec)   p_kst 4.804286e-01   p_cons 1.477143e-02   p_joint 2.614286e-02

Joint ci ratio: 5.652250e-02	ci left: 5.510727e-02	ci right 5.832497e-02	k: 4536	n:80000
Cons ci ratio: 1.124986e-01	ci left: 1.410830e-02	ci right 1.580214e-02	k: 1195	n:80000
KS ci ratio: 1.443323e-02	ci left: 4.762451e-01	ci right 4.831813e-01	k: 38377	n:80000
DNAJC25   80000 perm   15 sec   (5263 perm/sec)   p_kst 4.797125e-01   p_cons 1.493750e-02   p_joint 5.670000e-02

Joint ci ratio: 3.976938e-02	ci left: 9.549236e-02	ci right 9.937808e-02	k: 8768	n:90000
Cons ci ratio: 1.060048e-01	ci left: 1.417269e-02	ci right 1.576990e-02	k: 1346	n:90000
KS ci ratio: 1.361452e-02	ci left: 4.761980e-01	ci right 4.827367e-01	k: 43152	n:90000
DNAJC25   90000 perm   17 sec   (5170 perm/sec)   p_kst 4.794667e-01   p_cons 1.495556e-02   p_joint 9.742222e-02

Joint ci ratio: 4.428165e-02	ci left: 7.105856e-02	ci right 7.428628e-02	k: 7266	n:100000
Cons ci ratio: 1.003497e-01	ci left: 1.427522e-02	ci right 1.579310e-02	k: 1502	n:100000
KS ci ratio: 1.291891e-02	ci left: 4.762493e-01	ci right 4.824519e-01	k: 47935	n:100000
DNAJC25   100000 perm   20 sec   (5078 perm/sec)   p_kst 4.793500e-01   p_cons 1.502000e-02   p_joint 7.266000e-02

Joint ci ratio: 4.115813e-02	ci left: 7.461173e-02	ci right 7.775612e-02	k: 8379	n:110000
Cons ci ratio: 9.586531e-02	ci left: 1.425444e-02	ci right 1.569857e-02	k: 1646	n:110000
KS ci ratio: 1.232231e-02	ci left: 4.762075e-01	ci right 4.821209e-01	k: 52708	n:110000
DNAJC25   110000 perm   22 sec   (4988 perm/sec)   p_kst 4.791636e-01   p_cons 1.496364e-02   p_joint 7.617273e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC25.2_1099_110000_0.47916_0.014964_0.076173.png
                gene_name: DNAJC25
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.078 

Current progress: 91 percent done.
DNAJC5G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
Cons ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
KS ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
DNAJC5G   10000 perm   1 sec   (7269 perm/sec)   p_kst 6.584000e-01   p_cons 3.579000e-01   p_joint 8.002000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC5G.2_586_10000_0.6584_0.3579_0.8002.png
                gene_name: DNAJC5G
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 93 percent done.
DNAJC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
Cons ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
DNAJC8   10000 perm   1 sec   (6906 perm/sec)   p_kst 7.943000e-01   p_cons 2.859000e-01   p_joint 9.602000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC8.2_798_10000_0.7943_0.2859_0.9602.png
                gene_name: DNAJC8
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 95 percent done.
DNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
DNAL1   10000 perm   1 sec   (6874 perm/sec)   p_kst 4.230000e-02   p_cons 3.740000e-01   p_joint 7.940000e-02

Joint ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
Cons ci ratio: 3.457171e-02	ci left: 3.844776e-01	ci right 3.980540e-01	k: 7825	n:20000
KS ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
DNAL1   20000 perm   3 sec   (6071 perm/sec)   p_kst 4.340000e-02   p_cons 3.912500e-01   p_joint 7.695000e-02

Joint ci ratio: 8.270391e-02	ci left: 6.677824e-02	ci right 7.257210e-02	k: 2089	n:30000
Cons ci ratio: 2.811339e-02	ci left: 3.876665e-01	ci right 3.987541e-01	k: 11796	n:30000
KS ci ratio: 1.084026e-01	ci left: 3.949821e-02	ci right 4.405774e-02	k: 1252	n:30000
DNAL1   30000 perm   5 sec   (6016 perm/sec)   p_kst 4.173333e-02   p_cons 3.932000e-01   p_joint 6.963333e-02

Joint ci ratio: 7.236167e-02	ci left: 6.587138e-02	ci right 7.084151e-02	k: 2733	n:40000
Cons ci ratio: 2.434476e-02	ci left: 3.884585e-01	ci right 3.980570e-01	k: 15730	n:40000
KS ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
DNAL1   40000 perm   7 sec   (5865 perm/sec)   p_kst 4.130000e-02   p_cons 3.932500e-01   p_joint 6.832500e-02

Outputting figure to mutsig2_images.part000000000051/DNAL1.2_605_40000_0.0413_0.39325_0.068325.png
                gene_name: DNAL1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 96 percent done.
DNASE1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
Cons ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
KS ci ratio: 5.711794e-03	ci left: 9.763158e-01	ci right 9.820003e-01	k: 9793	n:10000
DNASE1L1   10000 perm   1 sec   (6777 perm/sec)   p_kst 9.793000e-01   p_cons 5.711000e-01   p_joint 9.874000e-01

Outputting figure to mutsig2_images.part000000000051/DNASE1L1.2_937_10000_0.9793_0.5711_0.9874.png
                gene_name: DNASE1L1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
DNASE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
Cons ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
KS ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
DNASE2B   10000 perm   1 sec   (6670 perm/sec)   p_kst 4.122000e-01   p_cons 1.090000e-02   p_joint 1.113000e-01

Joint ci ratio: 5.780443e-02	ci left: 1.815181e-01	ci right 1.923731e-01	k: 3738	n:20000
Cons ci ratio: 2.616225e-01	ci left: 9.647644e-03	ci right 1.259707e-02	k: 221	n:20000
KS ci ratio: 3.316903e-02	ci left: 4.043191e-01	ci right 4.180067e-01	k: 8223	n:20000
DNASE2B   20000 perm   3 sec   (5899 perm/sec)   p_kst 4.111500e-01   p_cons 1.105000e-02   p_joint 1.869000e-01

Joint ci ratio: 6.330258e-02	ci left: 1.097342e-01	ci right 1.169408e-01	k: 3399	n:30000
Cons ci ratio: 2.126491e-01	ci left: 1.000844e-02	ci right 1.242095e-02	k: 335	n:30000
KS ci ratio: 2.709909e-02	ci left: 4.052916e-01	ci right 4.164590e-01	k: 12326	n:30000
DNASE2B   30000 perm   5 sec   (5623 perm/sec)   p_kst 4.108667e-01   p_cons 1.116667e-02   p_joint 1.133000e-01

Joint ci ratio: 5.482409e-02	ci left: 1.102095e-01	ci right 1.164468e-01	k: 4532	n:40000
Cons ci ratio: 1.886845e-01	ci left: 9.667217e-03	ci right 1.170476e-02	k: 426	n:40000
KS ci ratio: 2.352916e-02	ci left: 4.048000e-01	ci right 4.144631e-01	k: 16385	n:40000
DNASE2B   40000 perm   7 sec   (5440 perm/sec)   p_kst 4.096250e-01   p_cons 1.065000e-02   p_joint 1.133000e-01

Joint ci ratio: 5.745086e-02	ci left: 8.272759e-02	ci right 8.764070e-02	k: 4258	n:50000
Cons ci ratio: 1.676181e-01	ci left: 9.912512e-03	ci right 1.174495e-02	k: 540	n:50000
KS ci ratio: 2.102901e-02	ci left: 4.056843e-01	ci right 4.143262e-01	k: 20500	n:50000
DNASE2B   50000 perm   9 sec   (5386 perm/sec)   p_kst 4.100000e-01   p_cons 1.080000e-02   p_joint 8.516000e-02

Joint ci ratio: 6.558116e-02	ci left: 5.435395e-02	ci right 5.805579e-02	k: 3371	n:60000
Cons ci ratio: 1.543657e-01	ci left: 9.812005e-03	ci right 1.146917e-02	k: 637	n:60000
KS ci ratio: 1.924127e-02	ci left: 4.049457e-01	ci right 4.128298e-01	k: 24533	n:60000
DNASE2B   60000 perm   11 sec   (5329 perm/sec)   p_kst 4.088833e-01   p_cons 1.061667e-02   p_joint 5.618333e-02

Joint ci ratio: 7.566276e-02	ci left: 3.552958e-02	ci right 3.833754e-02	k: 2584	n:70000
Cons ci ratio: 1.437305e-01	ci left: 9.758106e-03	ci right 1.128288e-02	k: 735	n:70000
KS ci ratio: 1.780342e-02	ci left: 4.055258e-01	ci right 4.128246e-01	k: 28642	n:70000
DNASE2B   70000 perm   13 sec   (5233 perm/sec)   p_kst 4.091714e-01   p_cons 1.050000e-02   p_joint 3.691429e-02

Joint ci ratio: 7.771200e-02	ci left: 2.962580e-02	ci right 3.203338e-02	k: 2465	n:80000
Cons ci ratio: 1.344592e-01	ci left: 9.805218e-03	ci right 1.123061e-02	k: 840	n:80000
KS ci ratio: 1.663372e-02	ci left: 4.063392e-01	ci right 4.131673e-01	k: 32780	n:80000
DNASE2B   80000 perm   16 sec   (5158 perm/sec)   p_kst 4.097500e-01   p_cons 1.050000e-02   p_joint 3.081250e-02

Joint ci ratio: 7.447061e-02	ci left: 2.875329e-02	ci right 3.098826e-02	k: 2687	n:90000
Cons ci ratio: 1.261727e-01	ci left: 9.941193e-03	ci right 1.129063e-02	k: 954	n:90000
KS ci ratio: 1.569490e-02	ci left: 4.061516e-01	ci right 4.125876e-01	k: 36843	n:90000
DNASE2B   90000 perm   18 sec   (5088 perm/sec)   p_kst 4.093667e-01   p_cons 1.060000e-02   p_joint 2.985556e-02

Joint ci ratio: 6.953691e-02	ci left: 2.972794e-02	ci right 3.187939e-02	k: 3079	n:100000
Cons ci ratio: 1.198186e-01	ci left: 9.955092e-03	ci right 1.123353e-02	k: 1058	n:100000
KS ci ratio: 1.487157e-02	ci left: 4.068993e-01	ci right 4.130059e-01	k: 40995	n:100000
DNASE2B   100000 perm   20 sec   (5015 perm/sec)   p_kst 4.099500e-01   p_cons 1.058000e-02   p_joint 3.079000e-02

Joint ci ratio: 6.032841e-02	ci left: 3.584739e-02	ci right 3.808620e-02	k: 4065	n:110000
Cons ci ratio: 1.137942e-01	ci left: 1.006504e-02	ci right 1.128824e-02	k: 1173	n:110000
KS ci ratio: 1.417272e-02	ci left: 4.072730e-01	ci right 4.130954e-01	k: 45120	n:110000
DNASE2B   110000 perm   22 sec   (4936 perm/sec)   p_kst 4.101818e-01   p_cons 1.066364e-02   p_joint 3.695455e-02

Joint ci ratio: 6.077380e-02	ci left: 3.248904e-02	ci right 3.453358e-02	k: 4020	n:120000
Cons ci ratio: 1.090240e-01	ci left: 1.007691e-02	ci right 1.124692e-02	k: 1278	n:120000
KS ci ratio: 1.353992e-02	ci left: 4.084473e-01	ci right 4.140236e-01	k: 49348	n:120000
DNASE2B   120000 perm   25 sec   (4856 perm/sec)   p_kst 4.112333e-01   p_cons 1.065000e-02   p_joint 3.350000e-02

Joint ci ratio: 5.530480e-02	ci left: 3.617772e-02	ci right 3.824299e-02	k: 4836	n:130000
Cons ci ratio: 1.048841e-01	ci left: 1.007288e-02	ci right 1.119527e-02	k: 1381	n:130000
KS ci ratio: 1.299313e-02	ci left: 4.091382e-01	ci right 4.144965e-01	k: 53536	n:130000
DNASE2B   130000 perm   27 sec   (4783 perm/sec)   p_kst 4.118154e-01   p_cons 1.062308e-02   p_joint 3.720000e-02

Joint ci ratio: 5.726576e-02	ci left: 3.145751e-02	ci right 3.331906e-02	k: 4533	n:140000
Cons ci ratio: 1.003997e-01	ci left: 1.023033e-02	ci right 1.131865e-02	k: 1507	n:140000
KS ci ratio: 1.251998e-02	ci left: 4.092559e-01	ci right 4.144192e-01	k: 57657	n:140000
DNASE2B   140000 perm   30 sec   (4664 perm/sec)   p_kst 4.118357e-01   p_cons 1.076429e-02   p_joint 3.237857e-02

Joint ci ratio: 5.493863e-02	ci left: 3.192408e-02	ci right 3.373404e-02	k: 4923	n:150000
Cons ci ratio: 9.719967e-02	ci left: 1.020499e-02	ci right 1.125405e-02	k: 1608	n:150000
KS ci ratio: 1.209768e-02	ci left: 4.092545e-01	ci right 4.142423e-01	k: 61762	n:150000
DNASE2B   150000 perm   33 sec   (4595 perm/sec)   p_kst 4.117467e-01   p_cons 1.072000e-02   p_joint 3.282000e-02

Outputting figure to mutsig2_images.part000000000051/DNASE2B.2_1110_150000_0.41175_0.01072_0.03282.png
                gene_name: DNASE2B
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000051
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 51 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1530>
Subject: Job 4421891: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1530>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000052> was used as the working directory.
Started at Wed Oct 24 17:39:09 2012
Results reported at Wed Oct 24 21:26:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000052.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000052.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 52  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000052.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14612.73 sec.
    Max Memory :      5405 MB
    Max Swap   :      7802 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
52
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 52
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 52: processing genes 4615 - 4704
Calculating significance of each gene.
Using projection method.
4615	DND1	1
4616	DNER	2.182546e-02
4617	DNHD1	5.364253e-01
4618	DNLZ	1
4619	DNM1	5.641700e-01
4620	DNM1L	7.878212e-01
4621	DNM2	1
4622	DNM3	8.151364e-01
4623	DNMBP	8.983521e-01
4624	DNMT1	9.701881e-01
4625	DNMT3A	1.462701e-01
4626	DNMT3B	1
4627	DNMT3L	9.235443e-01
4628	DNPEP	1
4629	DNTT	5.820081e-01
4630	DNTTIP1	8.437367e-01
4631	DNTTIP2	8.199801e-01
4632	DOC2A	1
4633	DOCK1	9.706258e-01
4634	DOCK10	9.969060e-01
4635	DOCK11	9.956317e-01
4636	DOCK2	1
4637	DOCK3	9.999838e-01
4638	DOCK4	4.737432e-01
4639	DOCK5	7.605713e-01
4640	DOCK6	9.999333e-01
4641	DOCK7	9.997401e-01
4642	DOCK8	9.999811e-01
4643	DOCK9	9.959603e-01
4644	DOHH	1
4645	DOK1	3.510205e-01
4646	DOK2	6.852289e-01
4647	DOK3	8.415532e-01
4648	DOK4	1
4649	DOK5	1.922853e-01
4650	DOK6	6.627833e-01
4651	DOK7	1
4652	DOLK	9.192627e-01
4653	DOLPP1	6.859431e-01
4654	DOM3Z	1
4655	DONSON	8.513415e-01
4656	DOPEY1	1
4657	DOPEY2	9.998818e-01
4658	DOT1L	5.343546e-01
4659	DPAGT1	7.577729e-01
4660	DPCD	1
4661	DPEP1	3.064486e-01
4662	DPEP2	7.035217e-01
4663	DPEP3	8.239638e-02
4664	DPF1	2.809432e-01
4665	DPF2	5.509521e-01
4666	DPF3	8.675322e-01
4667	DPH1	1
4668	DPH2	8.203784e-01
4669	DPH3	1
4670	DPH3B	1
4671	DPH5	6.285671e-01
4672	DPM1	7.466130e-01
4673	DPM2	1
4674	DPM3	1
4675	DPP10	1.025828e-02
4676	DPP3	9.881148e-01
4677	DPP4	8.606245e-01
4678	DPP6	1
4679	DPP7	1
4680	DPP8	9.941364e-01
4681	DPP9	9.732642e-01
4682	DPPA2	1
4683	DPPA3	1
4684	DPPA4	1.163510e-01
4685	DPPA5	5.427747e-01
4686	DPRX	5.022163e-01
4687	DPT	2.141216e-01
4688	DPY19L1	1
4689	DPY19L2	9.518287e-01
4690	DPY19L3	1
4691	DPY19L4	9.089743e-01
4692	DPY30	1
4693	DPYD	1.584779e-01
4694	DPYS	6.439928e-01
4695	DPYSL2	9.527737e-01
4696	DPYSL3	3.898369e-01
4697	DPYSL4	4.010980e-01
4698	DPYSL5	4.537177e-01
4699	DQX1	9.634491e-01
4700	DR1	1
4701	DRAM1	1
4702	DRAM2	4.833793e-01
4703	DRAP1	1.032991e-01
4704	DRD1	9.294728e-01
Done

Running MutSig 2:
Scatter job 52: processing genes 4615 - 4704
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DOCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
DOCK2   10000 perm   4 sec   (2795 perm/sec)   p_kst 7.787000e-01   p_cons 1.480000e-02   p_joint 4.660000e-02

Joint ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
Cons ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
KS ci ratio: 1.477033e-02	ci left: 7.730329e-01	ci right 7.845859e-01	k: 15577	n:20000
DOCK2   20000 perm   10 sec   (1920 perm/sec)   p_kst 7.788500e-01   p_cons 1.880000e-02   p_joint 1.109500e-01

Joint ci ratio: 7.059395e-02	ci left: 8.990037e-02	ci right 9.651198e-02	k: 2795	n:30000
Cons ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
KS ci ratio: 1.204998e-02	ci left: 7.743956e-01	ci right 7.838170e-01	k: 23374	n:30000
DOCK2   30000 perm   14 sec   (2070 perm/sec)   p_kst 7.791333e-01   p_cons 1.896667e-02   p_joint 9.316667e-02

Joint ci ratio: 6.393695e-02	ci left: 8.314692e-02	ci right 8.866337e-02	k: 3435	n:40000
Cons ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
KS ci ratio: 1.043053e-02	ci left: 7.752031e-01	ci right 7.833563e-01	k: 31172	n:40000
DOCK2   40000 perm   19 sec   (2149 perm/sec)   p_kst 7.793000e-01   p_cons 1.890000e-02   p_joint 8.587500e-02

Joint ci ratio: 6.208613e-02	ci left: 7.154288e-02	ci right 7.614675e-02	k: 3691	n:50000
Cons ci ratio: 1.275494e-01	ci left: 1.735627e-02	ci right 1.974009e-02	k: 926	n:50000
KS ci ratio: 9.655289e-03	ci left: 7.635306e-01	ci right 7.709584e-01	k: 38363	n:50000
DOCK2   50000 perm   23 sec   (2188 perm/sec)   p_kst 7.672600e-01   p_cons 1.852000e-02   p_joint 7.382000e-02

Joint ci ratio: 6.125168e-02	ci left: 6.193940e-02	ci right 6.586958e-02	k: 3833	n:60000
Cons ci ratio: 1.170489e-01	ci left: 1.727491e-02	ci right 1.943870e-02	k: 1100	n:60000
KS ci ratio: 8.814691e-03	ci left: 7.638307e-01	ci right 7.706101e-01	k: 46034	n:60000
DOCK2   60000 perm   27 sec   (2214 perm/sec)   p_kst 7.672333e-01   p_cons 1.833333e-02   p_joint 6.388333e-02

Joint ci ratio: 5.722230e-02	ci left: 6.102791e-02	ci right 6.463701e-02	k: 4397	n:70000
Cons ci ratio: 1.077484e-01	ci left: 1.755635e-02	ci right 1.956956e-02	k: 1298	n:70000
KS ci ratio: 8.505568e-03	ci left: 7.489124e-01	ci right 7.553238e-01	k: 52649	n:70000
DOCK2   70000 perm   31 sec   (2224 perm/sec)   p_kst 7.521286e-01   p_cons 1.854286e-02   p_joint 6.281429e-02

Joint ci ratio: 5.216804e-02	ci left: 6.420260e-02	ci right 6.765396e-02	k: 5273	n:80000
Cons ci ratio: 1.010524e-01	ci left: 1.752872e-02	ci right 1.940643e-02	k: 1476	n:80000
KS ci ratio: 7.961643e-03	ci left: 7.488666e-01	ci right 7.548651e-01	k: 60150	n:80000
DOCK2   80000 perm   36 sec   (2229 perm/sec)   p_kst 7.518750e-01   p_cons 1.845000e-02   p_joint 6.591250e-02

Joint ci ratio: 4.839569e-02	ci left: 6.629776e-02	ci right 6.959682e-02	k: 6114	n:90000
Cons ci ratio: 9.558501e-02	ci left: 1.746687e-02	ci right 1.923103e-02	k: 1650	n:90000
KS ci ratio: 7.505808e-03	ci left: 7.490646e-01	ci right 7.547192e-01	k: 67671	n:90000
DOCK2   90000 perm   40 sec   (2223 perm/sec)   p_kst 7.519000e-01   p_cons 1.833333e-02   p_joint 6.793333e-02

Outputting figure to mutsig2_images.part000000000052/DOCK2.29_5701_90000_0.7519_0.018333_0.067933.png
                gene_name: DOCK2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 2 percent done.
DOCK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
Cons ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
KS ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
DOCK7   10000 perm   3 sec   (2930 perm/sec)   p_kst 5.260000e-02   p_cons 7.670000e-01   p_joint 1.402000e-01

Joint ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
Cons ci ratio: 1.550600e-02	ci left: 7.556822e-01	ci right 7.675416e-01	k: 15233	n:20000
KS ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
DOCK7   20000 perm   7 sec   (2736 perm/sec)   p_kst 4.715000e-02   p_cons 7.616500e-01   p_joint 8.800000e-02

Joint ci ratio: 7.261671e-02	ci left: 8.530935e-02	ci right 9.177059e-02	k: 2655	n:30000
Cons ci ratio: 1.200796e-02	ci left: 7.756046e-01	ci right 7.850077e-01	k: 23410	n:30000
KS ci ratio: 1.007531e-01	ci left: 4.560825e-02	ci right 5.047975e-02	k: 1440	n:30000
DOCK7   30000 perm   11 sec   (2654 perm/sec)   p_kst 4.800000e-02   p_cons 7.803333e-01   p_joint 8.850000e-02

Joint ci ratio: 6.411061e-02	ci left: 8.272812e-02	ci right 8.823223e-02	k: 3418	n:40000
Cons ci ratio: 1.037973e-02	ci left: 7.768891e-01	ci right 7.850201e-01	k: 31239	n:40000
KS ci ratio: 8.847936e-02	ci left: 4.470170e-02	ci right 4.886442e-02	k: 1870	n:40000
DOCK7   40000 perm   15 sec   (2591 perm/sec)   p_kst 4.675000e-02   p_cons 7.809750e-01   p_joint 8.545000e-02

Outputting figure to mutsig2_images.part000000000052/DOCK7.25_6526_40000_0.04675_0.78097_0.08545.png
                gene_name: DOCK7
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 4 percent done.
DOCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
KS ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
DOCK4   10000 perm   3 sec   (3341 perm/sec)   p_kst 9.380000e-01   p_cons 8.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK4.17_6109_10000_0.938_0.8028_1.png
                gene_name: DOCK4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
DPP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
DPP10   10000 perm   2 sec   (4255 perm/sec)   p_kst 4.830000e-02   p_cons 3.057000e-01   p_joint 5.940000e-02

Joint ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
Cons ci ratio: 4.330263e-02	ci left: 2.843133e-01	ci right 2.969477e-01	k: 5812	n:20000
KS ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
DPP10   20000 perm   5 sec   (3835 perm/sec)   p_kst 5.240000e-02   p_cons 2.906000e-01   p_joint 7.905000e-02

Joint ci ratio: 7.501217e-02	ci left: 8.029511e-02	ci right 8.658584e-02	k: 2502	n:30000
Cons ci ratio: 3.446709e-02	ci left: 2.960445e-01	ci right 3.064607e-01	k: 9037	n:30000
KS ci ratio: 9.460228e-02	ci left: 5.156679e-02	ci right 5.671998e-02	k: 1623	n:30000
DPP10   30000 perm   8 sec   (3676 perm/sec)   p_kst 5.410000e-02   p_cons 3.012333e-01   p_joint 8.340000e-02

Outputting figure to mutsig2_images.part000000000052/DPP10.16_2666_30000_0.0541_0.30123_0.0834.png
                gene_name: DPP10
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 7 percent done.
DOCK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
DOCK10   10000 perm   3 sec   (3133 perm/sec)   p_kst 8.570000e-02   p_cons 5.894000e-01   p_joint 1.418000e-01

Joint ci ratio: 6.736176e-02	ci left: 1.399006e-01	ci right 1.497029e-01	k: 2895	n:20000
Cons ci ratio: 2.338580e-02	ci left: 5.772825e-01	ci right 5.909930e-01	k: 11683	n:20000
KS ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
DOCK10   20000 perm   7 sec   (2919 perm/sec)   p_kst 8.435000e-02   p_cons 5.841500e-01   p_joint 1.447500e-01

Outputting figure to mutsig2_images.part000000000052/DOCK10.14_6785_20000_0.08435_0.58415_0.14475.png
                gene_name: DOCK10
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
DOCK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
Cons ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
KS ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
DOCK11   10000 perm   3 sec   (3129 perm/sec)   p_kst 1.189000e-01   p_cons 4.840000e-01   p_joint 2.518000e-01

Joint ci ratio: 5.933193e-02	ci left: 1.738079e-01	ci right 1.844856e-01	k: 3582	n:20000
Cons ci ratio: 2.857507e-02	ci left: 4.778013e-01	ci right 4.917031e-01	k: 9695	n:20000
KS ci ratio: 7.594459e-02	ci left: 1.130680e-01	ci right 1.220435e-01	k: 2350	n:20000
DOCK11   20000 perm   7 sec   (2970 perm/sec)   p_kst 1.175000e-01   p_cons 4.847500e-01   p_joint 1.791000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK11.13_6434_20000_0.1175_0.48475_0.1791.png
                gene_name: DOCK11
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 11 percent done.
DPYD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 2.510632e-02	ci left: 7.000883e-01	ci right 7.179898e-01	k: 7091	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
DPYD   10000 perm   2 sec   (4181 perm/sec)   p_kst 4.740000e-02   p_cons 7.091000e-01   p_joint 1.128000e-01

Joint ci ratio: 8.956675e-02	ci left: 8.347212e-02	ci right 9.134831e-02	k: 1747	n:20000
Cons ci ratio: 1.763932e-02	ci left: 7.054171e-01	ci right 7.180213e-01	k: 14235	n:20000
KS ci ratio: 1.249523e-01	ci left: 4.396240e-02	ci right 4.987023e-02	k: 937	n:20000
DPYD   20000 perm   5 sec   (3781 perm/sec)   p_kst 4.685000e-02   p_cons 7.117500e-01   p_joint 8.735000e-02

Joint ci ratio: 6.497407e-02	ci left: 1.046735e-01	ci right 1.117360e-01	k: 3245	n:30000
Cons ci ratio: 1.431076e-02	ci left: 7.092179e-01	ci right 7.194739e-01	k: 21431	n:30000
KS ci ratio: 1.016078e-01	ci left: 4.486009e-02	ci right 4.969474e-02	k: 1417	n:30000
DPYD   30000 perm   8 sec   (3608 perm/sec)   p_kst 4.723333e-02   p_cons 7.143667e-01   p_joint 1.081667e-01

Joint ci ratio: 6.653397e-02	ci left: 7.718710e-02	ci right 8.252408e-02	k: 3193	n:40000
Cons ci ratio: 1.300081e-02	ci left: 6.899093e-01	ci right 6.989624e-01	k: 27778	n:40000
KS ci ratio: 8.910567e-02	ci left: 4.408994e-02	ci right 4.822627e-02	k: 1845	n:40000
DPYD   40000 perm   11 sec   (3518 perm/sec)   p_kst 4.612500e-02   p_cons 6.944500e-01   p_joint 7.982500e-02

Outputting figure to mutsig2_images.part000000000052/DPYD.12_3213_40000_0.046125_0.69445_0.079825.png
                gene_name: DPYD
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 12 percent done.
DNER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
Cons ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
KS ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
DNER   10000 perm   2 sec   (4358 perm/sec)   p_kst 4.273000e-01   p_cons 2.430000e-01   p_joint 2.960000e-01

Outputting figure to mutsig2_images.part000000000052/DNER.11_2266_10000_0.4273_0.243_0.296.png
                gene_name: DNER
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 14 percent done.
DNMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
Cons ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
KS ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
DNMBP   10000 perm   3 sec   (3750 perm/sec)   p_kst 5.488000e-01   p_cons 8.201000e-01   p_joint 7.651000e-01

Outputting figure to mutsig2_images.part000000000052/DNMBP.11_4798_10000_0.5488_0.8201_0.7651.png
                gene_name: DNMBP
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 16 percent done.
DNMT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
DNMT3A   10000 perm   2 sec   (4522 perm/sec)   p_kst 1.494000e-01   p_cons 2.820000e-02   p_joint 6.350000e-02

Joint ci ratio: 9.841040e-02	ci left: 6.987174e-02	ci right 7.715284e-02	k: 1469	n:20000
Cons ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
KS ci ratio: 6.837259e-02	ci left: 1.363027e-01	ci right 1.460018e-01	k: 2822	n:20000
DNMT3A   20000 perm   5 sec   (4088 perm/sec)   p_kst 1.411000e-01   p_cons 2.905000e-02   p_joint 7.345000e-02

Joint ci ratio: 9.199587e-02	ci left: 5.443544e-02	ci right 5.971741e-02	k: 1711	n:30000
Cons ci ratio: 1.318969e-01	ci left: 2.671071e-02	ci right 3.051465e-02	k: 857	n:30000
KS ci ratio: 5.531400e-02	ci left: 1.394191e-01	ci right 1.473835e-01	k: 4301	n:30000
DNMT3A   30000 perm   8 sec   (3927 perm/sec)   p_kst 1.433667e-01   p_cons 2.856667e-02   p_joint 5.703333e-02

Joint ci ratio: 9.174184e-02	ci left: 4.164399e-02	ci right 4.567260e-02	k: 1745	n:40000
Cons ci ratio: 1.142780e-01	ci left: 2.693975e-02	ci right 3.022916e-02	k: 1142	n:40000
KS ci ratio: 4.794738e-02	ci left: 1.397313e-01	ci right 1.466205e-01	k: 5726	n:40000
DNMT3A   40000 perm   10 sec   (3819 perm/sec)   p_kst 1.431500e-01   p_cons 2.855000e-02   p_joint 4.362500e-02

Joint ci ratio: 9.129643e-02	ci left: 3.393422e-02	ci right 3.719999e-02	k: 1777	n:50000
Cons ci ratio: 1.016202e-01	ci left: 2.742950e-02	ci right 3.038554e-02	k: 1444	n:50000
KS ci ratio: 4.297225e-02	ci left: 1.396054e-01	ci right 1.457562e-01	k: 7133	n:50000
DNMT3A   50000 perm   13 sec   (3726 perm/sec)   p_kst 1.426600e-01   p_cons 2.888000e-02   p_joint 3.554000e-02

Joint ci ratio: 7.359459e-02	ci left: 4.348595e-02	ci right 4.682489e-02	k: 2708	n:60000
Cons ci ratio: 9.265628e-02	ci left: 2.762291e-02	ci right 3.032291e-02	k: 1737	n:60000
KS ci ratio: 3.923565e-02	ci left: 1.398277e-01	ci right 1.454403e-01	k: 8557	n:60000
DNMT3A   60000 perm   16 sec   (3657 perm/sec)   p_kst 1.426167e-01   p_cons 2.895000e-02   p_joint 4.513333e-02

Outputting figure to mutsig2_images.part000000000052/DNMT3A.11_2960_60000_0.14262_0.02895_0.045133.png
                gene_name: DNMT3A
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 18 percent done.
DPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
Cons ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
KS ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
DPP6   10000 perm   2 sec   (4463 perm/sec)   p_kst 8.211000e-01   p_cons 6.464000e-01   p_joint 8.967000e-01

Outputting figure to mutsig2_images.part000000000052/DPP6.11_2818_10000_0.8211_0.6464_0.8967.png
                gene_name: DPP6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 19 percent done.
DNHD1
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
DNHD1   10000 perm   5 sec   (2115 perm/sec)   p_kst 1.600000e-03   p_cons 3.104000e-01   p_joint 9.600000e-03

Joint ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
Cons ci ratio: 4.332364e-02	ci left: 2.841146e-01	ci right 2.967464e-01	k: 5808	n:20000
KS ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
DNHD1   20000 perm   10 sec   (1992 perm/sec)   p_kst 2.250000e-03   p_cons 2.904000e-01   p_joint 8.800000e-03

Joint ci ratio: 3.214209e-01	ci left: 4.141425e-03	ci right 5.756742e-03	k: 147	n:30000
Cons ci ratio: 3.609798e-02	ci left: 2.770454e-01	ci right 2.872635e-01	k: 8464	n:30000
KS ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
DNHD1   30000 perm   15 sec   (1936 perm/sec)   p_kst 2.033333e-03   p_cons 2.821333e-01   p_joint 4.900000e-03

Joint ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
Cons ci ratio: 3.147081e-02	ci left: 2.750562e-01	ci right 2.838759e-01	k: 11178	n:40000
KS ci ratio: 4.272524e-01	ci left: 1.653054e-03	ci right 2.571635e-03	k: 83	n:40000
DNHD1   40000 perm   21 sec   (1916 perm/sec)   p_kst 2.075000e-03   p_cons 2.794500e-01   p_joint 9.775000e-03

Joint ci ratio: 2.052814e-01	ci left: 6.496630e-03	ci right 8.001431e-03	k: 361	n:50000
Cons ci ratio: 2.656596e-02	ci left: 2.993121e-01	ci right 3.073907e-01	k: 15167	n:50000
KS ci ratio: 3.803365e-01	ci left: 1.717903e-03	ci right 2.541616e-03	k: 105	n:50000
DNHD1   50000 perm   26 sec   (1892 perm/sec)   p_kst 2.100000e-03   p_cons 3.033400e-01   p_joint 7.220000e-03

Joint ci ratio: 1.919901e-01	ci left: 6.237376e-03	ci right 7.577653e-03	k: 413	n:60000
Cons ci ratio: 2.422512e-02	ci left: 3.001213e-01	ci right 3.074976e-01	k: 18228	n:60000
KS ci ratio: 3.345229e-01	ci left: 1.902072e-03	ci right 2.680657e-03	k: 136	n:60000
DNHD1   60000 perm   32 sec   (1869 perm/sec)   p_kst 2.266667e-03   p_cons 3.038000e-01   p_joint 6.883333e-03

Joint ci ratio: 1.897933e-01	ci left: 5.482145e-03	ci right 6.645086e-03	k: 423	n:70000
Cons ci ratio: 2.241537e-02	ci left: 3.006362e-01	ci right 3.074657e-01	k: 21283	n:70000
KS ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
DNHD1   70000 perm   38 sec   (1838 perm/sec)   p_kst 2.200000e-03   p_cons 3.040429e-01   p_joint 6.042857e-03

Joint ci ratio: 2.204304e-01	ci left: 3.503543e-03	ci right 4.383033e-03	k: 314	n:80000
Cons ci ratio: 2.142259e-02	ci left: 2.918785e-01	ci right 2.982114e-01	k: 23603	n:80000
KS ci ratio: 2.934875e-01	ci left: 1.898837e-03	ci right 2.563088e-03	k: 177	n:80000
DNHD1   80000 perm   44 sec   (1826 perm/sec)   p_kst 2.212500e-03   p_cons 2.950375e-01   p_joint 3.925000e-03

Joint ci ratio: 2.088246e-01	ci left: 3.492769e-03	ci right 4.317491e-03	k: 350	n:90000
Cons ci ratio: 2.019768e-02	ci left: 2.920549e-01	ci right 2.980250e-01	k: 26553	n:90000
KS ci ratio: 2.734712e-01	ci left: 1.966562e-03	ci right 2.599536e-03	k: 204	n:90000
DNHD1   90000 perm   50 sec   (1812 perm/sec)   p_kst 2.266667e-03   p_cons 2.950333e-01   p_joint 3.888889e-03

Joint ci ratio: 2.157597e-01	ci left: 2.935092e-03	ci right 3.654194e-03	k: 328	n:100000
Cons ci ratio: 1.916510e-02	ci left: 2.921246e-01	ci right 2.977873e-01	k: 29495	n:100000
KS ci ratio: 2.616212e-01	ci left: 1.947165e-03	ci right 2.542297e-03	k: 223	n:100000
DNHD1   100000 perm   56 sec   (1799 perm/sec)   p_kst 2.230000e-03   p_cons 2.949500e-01   p_joint 3.280000e-03

Joint ci ratio: 2.161219e-01	ci left: 2.659625e-03	ci right 3.312472e-03	k: 327	n:110000
Cons ci ratio: 1.823517e-02	ci left: 2.931219e-01	ci right 2.985252e-01	k: 32540	n:110000
KS ci ratio: 2.491423e-01	ci left: 1.965866e-03	ci right 2.533615e-03	k: 246	n:110000
DNHD1   110000 perm   62 sec   (1782 perm/sec)   p_kst 2.236364e-03   p_cons 2.958182e-01   p_joint 2.972727e-03

Joint ci ratio: 1.507927e-01	ci left: 5.177583e-03	ci right 6.029910e-03	k: 671	n:120000
Cons ci ratio: 1.742792e-02	ci left: 2.939749e-01	ci right 2.991516e-01	k: 35587	n:120000
KS ci ratio: 2.365444e-01	ci left: 2.013367e-03	ci right 2.561130e-03	k: 273	n:120000
DNHD1   120000 perm   68 sec   (1769 perm/sec)   p_kst 2.275000e-03   p_cons 2.965583e-01   p_joint 5.591667e-03

Joint ci ratio: 1.511649e-01	ci left: 4.757023e-03	ci right 5.542222e-03	k: 668	n:130000
Cons ci ratio: 1.677595e-02	ci left: 2.932891e-01	ci right 2.982585e-01	k: 38450	n:130000
KS ci ratio: 2.275850e-01	ci left: 2.017888e-03	ci right 2.543170e-03	k: 295	n:130000
DNHD1   130000 perm   74 sec   (1752 perm/sec)   p_kst 2.269231e-03   p_cons 2.957692e-01   p_joint 5.138462e-03

Joint ci ratio: 1.502926e-01	ci left: 4.472174e-03	ci right 5.205709e-03	k: 676	n:140000
Cons ci ratio: 1.615124e-02	ci left: 2.937520e-01	ci right 2.985422e-01	k: 41460	n:140000
KS ci ratio: 2.199189e-01	ci left: 2.015348e-03	ci right 2.519907e-03	k: 316	n:140000
DNHD1   140000 perm   81 sec   (1738 perm/sec)   p_kst 2.257143e-03   p_cons 2.961429e-01   p_joint 4.828571e-03

Joint ci ratio: 1.598462e-01	ci left: 3.674064e-03	ci right 4.318675e-03	k: 598	n:150000
Cons ci ratio: 1.559448e-02	ci left: 2.940763e-01	ci right 2.987049e-01	k: 44458	n:150000
KS ci ratio: 2.104966e-01	ci left: 2.063914e-03	ci right 2.555640e-03	k: 345	n:150000
DNHD1   150000 perm   87 sec   (1727 perm/sec)   p_kst 2.300000e-03   p_cons 2.963867e-01   p_joint 3.986667e-03

Joint ci ratio: 1.474147e-01	ci left: 4.075555e-03	ci right 4.730104e-03	k: 703	n:160000
Cons ci ratio: 1.508978e-02	ci left: 2.944124e-01	ci right 2.988950e-01	k: 47464	n:160000
KS ci ratio: 2.005878e-01	ci left: 2.142424e-03	ci right 2.625890e-03	k: 380	n:160000
DNHD1   160000 perm   93 sec   (1716 perm/sec)   p_kst 2.375000e-03   p_cons 2.966500e-01   p_joint 4.393750e-03

Joint ci ratio: 1.494730e-01	ci left: 3.728152e-03	ci right 4.336012e-03	k: 684	n:170000
Cons ci ratio: 1.463110e-02	ci left: 2.947110e-01	ci right 2.990606e-01	k: 50470	n:170000
KS ci ratio: 1.957687e-01	ci left: 2.122617e-03	ci right 2.588732e-03	k: 399	n:170000
DNHD1   170000 perm   100 sec   (1701 perm/sec)   p_kst 2.347059e-03   p_cons 2.968824e-01   p_joint 4.023529e-03

Joint ci ratio: 1.369157e-01	ci left: 4.222854e-03	ci right 4.848823e-03	k: 815	n:180000
Cons ci ratio: 1.422397e-02	ci left: 2.946235e-01	ci right 2.988497e-01	k: 53412	n:180000
KS ci ratio: 1.883741e-01	ci left: 2.173931e-03	ci right 2.631220e-03	k: 431	n:180000
DNHD1   180000 perm   107 sec   (1689 perm/sec)   p_kst 2.394444e-03   p_cons 2.967333e-01   p_joint 4.527778e-03

Joint ci ratio: 1.379546e-01	ci left: 3.939573e-03	ci right 4.528343e-03	k: 803	n:190000
Cons ci ratio: 1.386424e-02	ci left: 2.940897e-01	ci right 2.982007e-01	k: 56267	n:190000
KS ci ratio: 1.829482e-01	ci left: 2.189998e-03	ci right 2.635927e-03	k: 457	n:190000
DNHD1   190000 perm   113 sec   (1675 perm/sec)   p_kst 2.405263e-03   p_cons 2.961421e-01   p_joint 4.226316e-03

Joint ci ratio: 1.353734e-01	ci left: 3.892288e-03	ci right 4.462231e-03	k: 834	n:200000
Cons ci ratio: 1.350695e-02	ci left: 2.943342e-01	ci right 2.983417e-01	k: 59267	n:200000
KS ci ratio: 1.796478e-01	ci left: 2.161638e-03	ci right 2.592988e-03	k: 474	n:200000
DNHD1   200000 perm   120 sec   (1663 perm/sec)   p_kst 2.370000e-03   p_cons 2.963350e-01   p_joint 4.170000e-03

Joint ci ratio: 1.400072e-01	ci left: 3.458599e-03	ci right 3.983818e-03	k: 780	n:210000
Cons ci ratio: 1.318330e-02	ci left: 2.943237e-01	ci right 2.982343e-01	k: 62218	n:210000
KS ci ratio: 1.730294e-01	ci left: 2.227125e-03	ci right 2.653461e-03	k: 511	n:210000
DNHD1   210000 perm   127 sec   (1649 perm/sec)   p_kst 2.433333e-03   p_cons 2.962762e-01   p_joint 3.714286e-03

Joint ci ratio: 1.365531e-01	ci left: 3.476920e-03	ci right 3.990837e-03	k: 820	n:220000
Cons ci ratio: 1.287862e-02	ci left: 2.944196e-01	ci right 2.982403e-01	k: 65192	n:220000
KS ci ratio: 1.689535e-01	ci left: 2.234666e-03	ci right 2.651343e-03	k: 536	n:220000
DNHD1   220000 perm   134 sec   (1638 perm/sec)   p_kst 2.436364e-03   p_cons 2.963273e-01   p_joint 3.727273e-03

Joint ci ratio: 1.348443e-01	ci left: 3.413947e-03	ci right 3.911734e-03	k: 841	n:230000
Cons ci ratio: 1.259663e-02	ci left: 2.944256e-01	ci right 2.981622e-01	k: 68147	n:230000
KS ci ratio: 1.658941e-01	ci left: 2.220818e-03	ci right 2.626666e-03	k: 556	n:230000
DNHD1   230000 perm   141 sec   (1627 perm/sec)   p_kst 2.417391e-03   p_cons 2.962913e-01   p_joint 3.656522e-03

Joint ci ratio: 1.313027e-01	ci left: 3.456991e-03	ci right 3.946782e-03	k: 887	n:240000
Cons ci ratio: 1.232549e-02	ci left: 2.946649e-01	ci right 2.983234e-01	k: 71158	n:240000
KS ci ratio: 1.621522e-01	ci left: 2.232172e-03	ci right 2.629997e-03	k: 582	n:240000
DNHD1   240000 perm   149 sec   (1615 perm/sec)   p_kst 2.425000e-03   p_cons 2.964917e-01   p_joint 3.695833e-03

Joint ci ratio: 1.092863e-01	ci left: 4.840090e-03	ci right 5.403477e-03	k: 1279	n:250000
Cons ci ratio: 1.207762e-02	ci left: 2.946622e-01	ci right 2.982466e-01	k: 74113	n:250000
KS ci ratio: 1.595745e-01	ci left: 2.215824e-03	ci right 2.603856e-03	k: 601	n:250000
DNHD1   250000 perm   156 sec   (1604 perm/sec)   p_kst 2.404000e-03   p_cons 2.964520e-01   p_joint 5.116000e-03

Joint ci ratio: 1.075382e-01	ci left: 4.811087e-03	ci right 5.361572e-03	k: 1321	n:260000
Cons ci ratio: 1.183921e-02	ci left: 2.948331e-01	ci right 2.983483e-01	k: 77113	n:260000
KS ci ratio: 1.563605e-01	ci left: 2.222954e-03	ci right 2.603658e-03	k: 626	n:260000
DNHD1   260000 perm   163 sec   (1592 perm/sec)   p_kst 2.407692e-03   p_cons 2.965885e-01   p_joint 5.080769e-03

Joint ci ratio: 1.056768e-01	ci left: 4.802330e-03	ci right 5.341711e-03	k: 1368	n:270000
Cons ci ratio: 1.162584e-02	ci left: 2.945817e-01	ci right 2.980301e-01	k: 80002	n:270000
KS ci ratio: 1.536881e-01	ci left: 2.218943e-03	ci right 2.591867e-03	k: 648	n:270000
DNHD1   270000 perm   171 sec   (1582 perm/sec)   p_kst 2.400000e-03   p_cons 2.963037e-01   p_joint 5.066667e-03

Joint ci ratio: 1.053007e-01	ci left: 4.665573e-03	ci right 5.187612e-03	k: 1378	n:280000
Cons ci ratio: 1.141127e-02	ci left: 2.947980e-01	ci right 2.981848e-01	k: 83017	n:280000
KS ci ratio: 1.511482e-01	ci left: 2.215269e-03	ci right 2.580866e-03	k: 670	n:280000
DNHD1   280000 perm   178 sec   (1571 perm/sec)   p_kst 2.392857e-03   p_cons 2.964893e-01   p_joint 4.921429e-03

Joint ci ratio: 9.028371e-02	ci left: 6.166917e-03	ci right 6.753356e-03	k: 1872	n:290000
Cons ci ratio: 1.144077e-02	ci left: 2.865141e-01	ci right 2.898143e-01	k: 83567	n:290000
KS ci ratio: 1.485155e-01	ci left: 2.218537e-03	ci right 2.577730e-03	k: 694	n:290000
DNHD1   290000 perm   186 sec   (1562 perm/sec)   p_kst 2.393103e-03   p_cons 2.881621e-01   p_joint 6.455172e-03

Joint ci ratio: 8.955077e-02	ci left: 6.062348e-03	ci right 6.633918e-03	k: 1903	n:300000
Cons ci ratio: 1.125092e-02	ci left: 2.864532e-01	ci right 2.896976e-01	k: 86422	n:300000
KS ci ratio: 1.456103e-01	ci left: 2.234486e-03	ci right 2.588569e-03	k: 722	n:300000
DNHD1   300000 perm   193 sec   (1551 perm/sec)   p_kst 2.406667e-03   p_cons 2.880733e-01   p_joint 6.343333e-03

Joint ci ratio: 8.930081e-02	ci left: 5.901457e-03	ci right 6.456223e-03	k: 1914	n:310000
Cons ci ratio: 1.106725e-02	ci left: 2.865062e-01	ci right 2.896978e-01	k: 89311	n:310000
KS ci ratio: 1.437352e-01	ci left: 2.221476e-03	ci right 2.568576e-03	k: 741	n:310000
DNHD1   310000 perm   201 sec   (1541 perm/sec)   p_kst 2.390323e-03   p_cons 2.881000e-01   p_joint 6.174194e-03

Joint ci ratio: 8.838556e-02	ci left: 5.839251e-03	ci right 6.382252e-03	k: 1954	n:320000
Cons ci ratio: 1.089727e-02	ci left: 2.863690e-01	ci right 2.895098e-01	k: 92140	n:320000
KS ci ratio: 1.418372e-01	ci left: 2.212322e-03	ci right 2.553040e-03	k: 761	n:320000
DNHD1   320000 perm   209 sec   (1532 perm/sec)   p_kst 2.378125e-03   p_cons 2.879375e-01   p_joint 6.106250e-03

Joint ci ratio: 8.749782e-02	ci left: 5.780842e-03	ci right 6.312736e-03	k: 1994	n:330000
Cons ci ratio: 1.072941e-02	ci left: 2.864493e-01	ci right 2.895423e-01	k: 95038	n:330000
KS ci ratio: 1.401923e-01	ci left: 2.197902e-03	ci right 2.532145e-03	k: 779	n:330000
DNHD1   330000 perm   217 sec   (1522 perm/sec)   p_kst 2.360606e-03   p_cons 2.879939e-01   p_joint 6.042424e-03

Joint ci ratio: 8.876763e-02	ci left: 5.449701e-03	ci right 5.958780e-03	k: 1938	n:340000
Cons ci ratio: 1.056643e-02	ci left: 2.866280e-01	ci right 2.896756e-01	k: 97971	n:340000
KS ci ratio: 1.377410e-01	ci left: 2.212748e-03	ci right 2.542883e-03	k: 807	n:340000
DNHD1   340000 perm   225 sec   (1512 perm/sec)   p_kst 2.373529e-03   p_cons 2.881500e-01   p_joint 5.700000e-03

Joint ci ratio: 8.784579e-02	ci left: 5.408546e-03	ci right 5.908264e-03	k: 1979	n:350000
Cons ci ratio: 1.041856e-02	ci left: 2.864859e-01	ci right 2.894891e-01	k: 100795	n:350000
KS ci ratio: 1.359036e-01	ci left: 2.210232e-03	ci right 2.535237e-03	k: 829	n:350000
DNHD1   350000 perm   233 sec   (1502 perm/sec)   p_kst 2.368571e-03   p_cons 2.879857e-01   p_joint 5.654286e-03

Joint ci ratio: 8.686565e-02	ci left: 5.380574e-03	ci right 5.871880e-03	k: 2024	n:360000
Cons ci ratio: 1.027555e-02	ci left: 2.863991e-01	ci right 2.893599e-01	k: 103636	n:360000
KS ci ratio: 1.350142e-01	ci left: 2.178355e-03	ci right 2.496407e-03	k: 840	n:360000
DNHD1   360000 perm   241 sec   (1491 perm/sec)   p_kst 2.333333e-03   p_cons 2.878778e-01   p_joint 5.622222e-03

Joint ci ratio: 8.711051e-02	ci left: 5.206050e-03	ci right 5.682827e-03	k: 2013	n:370000
Cons ci ratio: 1.013760e-02	ci left: 2.863442e-01	ci right 2.892645e-01	k: 106487	n:370000
KS ci ratio: 1.333599e-01	ci left: 2.174331e-03	ci right 2.487598e-03	k: 861	n:370000
DNHD1   370000 perm   250 sec   (1481 perm/sec)   p_kst 2.327027e-03   p_cons 2.878027e-01   p_joint 5.440541e-03

Joint ci ratio: 8.615441e-02	ci left: 5.184901e-03	ci right 5.654268e-03	k: 2058	n:380000
Cons ci ratio: 1.000750e-02	ci left: 2.861927e-01	ci right 2.890737e-01	k: 109300	n:380000
KS ci ratio: 1.311707e-01	ci left: 2.190904e-03	ci right 2.500973e-03	k: 890	n:380000
DNHD1   380000 perm   259 sec   (1467 perm/sec)   p_kst 2.342105e-03   p_cons 2.876316e-01   p_joint 5.415789e-03

Joint ci ratio: 8.494544e-02	ci left: 5.200002e-03	ci right 5.663803e-03	k: 2117	n:390000
Cons ci ratio: 9.884072e-03	ci left: 2.859749e-01	ci right 2.888180e-01	k: 112084	n:390000
KS ci ratio: 1.291563e-01	ci left: 2.204185e-03	ci right 2.510976e-03	k: 918	n:390000
DNHD1   390000 perm   267 sec   (1459 perm/sec)   p_kst 2.353846e-03   p_cons 2.873949e-01   p_joint 5.428205e-03

Joint ci ratio: 8.545977e-02	ci left: 5.008813e-03	ci right 5.458400e-03	k: 2092	n:400000
Cons ci ratio: 9.761287e-03	ci left: 2.859280e-01	ci right 2.887351e-01	k: 114932	n:400000
KS ci ratio: 1.275699e-01	ci left: 2.204734e-03	ci right 2.507547e-03	k: 941	n:400000
DNHD1   400000 perm   276 sec   (1449 perm/sec)   p_kst 2.352500e-03   p_cons 2.873300e-01   p_joint 5.230000e-03

Joint ci ratio: 8.515907e-02	ci left: 4.922442e-03	ci right 5.362645e-03	k: 2107	n:410000
Cons ci ratio: 9.642105e-03	ci left: 2.859201e-01	ci right 2.886927e-01	k: 117795	n:410000
KS ci ratio: 1.258446e-01	ci left: 2.212365e-03	ci right 2.511810e-03	k: 967	n:410000
DNHD1   410000 perm   285 sec   (1441 perm/sec)   p_kst 2.358537e-03   p_cons 2.873049e-01   p_joint 5.139024e-03

Joint ci ratio: 8.476113e-02	ci left: 4.851841e-03	ci right 5.283602e-03	k: 2127	n:420000
Cons ci ratio: 9.527295e-03	ci left: 2.859080e-01	ci right 2.886473e-01	k: 120656	n:420000
KS ci ratio: 1.242502e-01	ci left: 2.217352e-03	ci right 2.513390e-03	k: 992	n:420000
DNHD1   420000 perm   293 sec   (1432 perm/sec)   p_kst 2.361905e-03   p_cons 2.872762e-01   p_joint 5.064286e-03

Joint ci ratio: 8.549598e-02	ci left: 4.657049e-03	ci right 5.075247e-03	k: 2091	n:430000
Cons ci ratio: 9.415903e-03	ci left: 2.859222e-01	ci right 2.886295e-01	k: 123528	n:430000
KS ci ratio: 1.228358e-01	ci left: 2.217621e-03	ci right 2.510079e-03	k: 1015	n:430000
DNHD1   430000 perm   302 sec   (1424 perm/sec)   p_kst 2.360465e-03   p_cons 2.872744e-01   p_joint 4.862791e-03

Joint ci ratio: 8.633399e-02	ci left: 4.462232e-03	ci right 4.867061e-03	k: 2051	n:440000
Cons ci ratio: 9.305282e-03	ci left: 2.860699e-01	ci right 2.887465e-01	k: 126459	n:440000
KS ci ratio: 1.208293e-01	ci left: 2.242140e-03	ci right 2.532657e-03	k: 1049	n:440000
DNHD1   440000 perm   311 sec   (1415 perm/sec)   p_kst 2.384091e-03   p_cons 2.874068e-01   p_joint 4.661364e-03

Joint ci ratio: 8.633849e-02	ci left: 4.363062e-03	ci right 4.758915e-03	k: 2051	n:450000
Cons ci ratio: 9.203011e-03	ci left: 2.860092e-01	ci right 2.886557e-01	k: 129299	n:450000
KS ci ratio: 1.191384e-01	ci left: 2.256981e-03	ci right 2.545041e-03	k: 1079	n:450000
DNHD1   450000 perm   320 sec   (1406 perm/sec)   p_kst 2.397778e-03   p_cons 2.873311e-01   p_joint 4.557778e-03

Joint ci ratio: 8.630056e-02	ci left: 4.272458e-03	ci right 4.659911e-03	k: 2053	n:460000
Cons ci ratio: 9.100802e-03	ci left: 2.860968e-01	ci right 2.887146e-01	k: 132206	n:460000
KS ci ratio: 1.179972e-01	ci left: 2.252214e-03	ci right 2.536720e-03	k: 1100	n:460000
DNHD1   460000 perm   329 sec   (1397 perm/sec)   p_kst 2.391304e-03   p_cons 2.874043e-01   p_joint 4.463043e-03

Joint ci ratio: 8.609443e-02	ci left: 4.202366e-03	ci right 4.582507e-03	k: 2063	n:470000
Cons ci ratio: 9.003094e-03	ci left: 2.861277e-01	ci right 2.887175e-01	k: 135088	n:470000
KS ci ratio: 1.165243e-01	ci left: 2.262123e-03	ci right 2.544067e-03	k: 1128	n:470000
DNHD1   470000 perm   339 sec   (1388 perm/sec)   p_kst 2.400000e-03   p_cons 2.874213e-01   p_joint 4.389362e-03

Joint ci ratio: 8.513035e-02	ci left: 4.210638e-03	ci right 4.587050e-03	k: 2110	n:480000
Cons ci ratio: 8.907469e-03	ci left: 2.862032e-01	ci right 2.887660e-01	k: 137992	n:480000
KS ci ratio: 1.152551e-01	ci left: 2.265569e-03	ci right 2.544658e-03	k: 1153	n:480000
DNHD1   480000 perm   348 sec   (1380 perm/sec)   p_kst 2.402083e-03   p_cons 2.874833e-01   p_joint 4.395833e-03

Joint ci ratio: 8.585192e-02	ci left: 4.054791e-03	ci right 4.420497e-03	k: 2075	n:490000
Cons ci ratio: 8.816497e-03	ci left: 2.861983e-01	ci right 2.887348e-01	k: 140858	n:490000
KS ci ratio: 1.145634e-01	ci left: 2.247082e-03	ci right 2.522120e-03	k: 1167	n:490000
DNHD1   490000 perm   357 sec   (1372 perm/sec)   p_kst 2.381633e-03   p_cons 2.874653e-01   p_joint 4.234694e-03

Joint ci ratio: 8.544326e-02	ci left: 4.012835e-03	ci right 4.372948e-03	k: 2095	n:500000
Cons ci ratio: 8.729109e-03	ci left: 2.861538e-01	ci right 2.886646e-01	k: 143704	n:500000
KS ci ratio: 1.133090e-01	ci left: 2.252659e-03	ci right 2.525159e-03	k: 1193	n:500000
DNHD1   500000 perm   366 sec   (1364 perm/sec)   p_kst 2.386000e-03   p_cons 2.874080e-01   p_joint 4.190000e-03

Joint ci ratio: 8.518194e-02	ci left: 3.959093e-03	ci right 4.313243e-03	k: 2108	n:510000
Cons ci ratio: 8.644682e-03	ci left: 2.860916e-01	ci right 2.885775e-01	k: 146540	n:510000
KS ci ratio: 1.120488e-01	ci left: 2.259938e-03	ci right 2.530078e-03	k: 1220	n:510000
DNHD1   510000 perm   376 sec   (1357 perm/sec)   p_kst 2.392157e-03   p_cons 2.873333e-01   p_joint 4.133333e-03

Joint ci ratio: 7.878325e-02	ci left: 4.551726e-03	ci right 4.926902e-03	k: 2463	n:520000
Cons ci ratio: 8.563061e-03	ci left: 2.860127e-01	ci right 2.884743e-01	k: 149366	n:520000
KS ci ratio: 1.110530e-01	ci left: 2.257605e-03	ci right 2.524910e-03	k: 1242	n:520000
DNHD1   520000 perm   385 sec   (1349 perm/sec)   p_kst 2.388462e-03   p_cons 2.872423e-01   p_joint 4.736538e-03

Joint ci ratio: 7.841992e-02	ci left: 4.508384e-03	ci right 4.878195e-03	k: 2486	n:530000
Cons ci ratio: 8.480542e-03	ci left: 2.860895e-01	ci right 2.885279e-01	k: 152273	n:530000
KS ci ratio: 1.099962e-01	ci left: 2.259040e-03	ci right 2.523805e-03	k: 1266	n:530000
DNHD1   530000 perm   395 sec   (1341 perm/sec)   p_kst 2.388679e-03   p_cons 2.873075e-01   p_joint 4.690566e-03

Joint ci ratio: 7.853446e-02	ci left: 4.412178e-03	ci right 4.774650e-03	k: 2479	n:540000
Cons ci ratio: 8.403137e-03	ci left: 2.860286e-01	ci right 2.884441e-01	k: 155107	n:540000
KS ci ratio: 1.091386e-01	ci left: 2.253228e-03	ci right 2.515120e-03	k: 1286	n:540000
DNHD1   540000 perm   405 sec   (1333 perm/sec)   p_kst 2.381481e-03   p_cons 2.872352e-01   p_joint 4.590741e-03

Joint ci ratio: 8.053568e-02	ci left: 4.116306e-03	ci right 4.463493e-03	k: 2358	n:550000
Cons ci ratio: 8.325225e-03	ci left: 2.860971e-01	ci right 2.884906e-01	k: 158011	n:550000
KS ci ratio: 1.082177e-01	ci left: 2.251173e-03	ci right 2.510477e-03	k: 1308	n:550000
DNHD1   550000 perm   415 sec   (1326 perm/sec)   p_kst 2.378182e-03   p_cons 2.872927e-01   p_joint 4.287273e-03

Joint ci ratio: 8.059026e-02	ci left: 4.037545e-03	ci right 4.378330e-03	k: 2355	n:560000
Cons ci ratio: 8.252427e-03	ci left: 2.860152e-01	ci right 2.883870e-01	k: 160832	n:560000
KS ci ratio: 1.071183e-01	ci left: 2.257889e-03	ci right 2.515159e-03	k: 1335	n:560000
DNHD1   560000 perm   425 sec   (1318 perm/sec)   p_kst 2.383929e-03   p_cons 2.872000e-01   p_joint 4.205357e-03

Joint ci ratio: 7.584224e-02	ci left: 4.487940e-03	ci right 4.843440e-03	k: 2658	n:570000
Cons ci ratio: 8.176845e-03	ci left: 2.861693e-01	ci right 2.885206e-01	k: 163786	n:570000
KS ci ratio: 1.062081e-01	ci left: 2.257552e-03	ci right 2.512461e-03	k: 1358	n:570000
DNHD1   570000 perm   435 sec   (1310 perm/sec)   p_kst 2.382456e-03   p_cons 2.873439e-01   p_joint 4.663158e-03

Joint ci ratio: 7.597459e-02	ci left: 4.395331e-03	ci right 4.744129e-03	k: 2649	n:580000
Cons ci ratio: 8.102380e-03	ci left: 2.863647e-01	ci right 2.886961e-01	k: 166767	n:580000
KS ci ratio: 1.054738e-01	ci left: 2.250519e-03	ci right 2.502768e-03	k: 1377	n:580000
DNHD1   580000 perm   445 sec   (1303 perm/sec)   p_kst 2.374138e-03   p_cons 2.875293e-01   p_joint 4.567241e-03

Joint ci ratio: 7.071474e-02	ci left: 4.998081e-03	ci right 5.366126e-03	k: 3056	n:590000
Cons ci ratio: 8.033466e-03	ci left: 2.863724e-01	ci right 2.886839e-01	k: 169641	n:590000
KS ci ratio: 1.049052e-01	ci left: 2.237129e-03	ci right 2.486442e-03	k: 1392	n:590000
DNHD1   590000 perm   455 sec   (1296 perm/sec)   p_kst 2.359322e-03   p_cons 2.875271e-01   p_joint 5.179661e-03

Joint ci ratio: 7.059027e-02	ci left: 4.932783e-03	ci right 5.295354e-03	k: 3067	n:600000
Cons ci ratio: 7.965212e-03	ci left: 2.864349e-01	ci right 2.887272e-01	k: 172548	n:600000
KS ci ratio: 1.040129e-01	ci left: 2.238798e-03	ci right 2.486046e-03	k: 1416	n:600000
DNHD1   600000 perm   466 sec   (1289 perm/sec)   p_kst 2.360000e-03   p_cons 2.875800e-01   p_joint 5.111667e-03

Joint ci ratio: 6.993194e-02	ci left: 4.945330e-03	ci right 5.305296e-03	k: 3125	n:610000
Cons ci ratio: 7.898857e-03	ci left: 2.864856e-01	ci right 2.887591e-01	k: 175449	n:610000
KS ci ratio: 1.031790e-01	ci left: 2.238825e-03	ci right 2.483972e-03	k: 1439	n:610000
DNHD1   610000 perm   476 sec   (1281 perm/sec)   p_kst 2.359016e-03   p_cons 2.876213e-01   p_joint 5.122951e-03

Joint ci ratio: 7.025177e-02	ci left: 4.821186e-03	ci right 5.173786e-03	k: 3097	n:620000
Cons ci ratio: 7.836416e-03	ci left: 2.864155e-01	ci right 2.886704e-01	k: 178276	n:620000
KS ci ratio: 1.024701e-01	ci left: 2.234143e-03	ci right 2.476996e-03	k: 1459	n:620000
DNHD1   620000 perm   487 sec   (1274 perm/sec)   p_kst 2.353226e-03   p_cons 2.875419e-01   p_joint 4.995161e-03

Joint ci ratio: 7.052964e-02	ci left: 4.707225e-03	ci right 5.052908e-03	k: 3073	n:630000
Cons ci ratio: 7.774378e-03	ci left: 2.864032e-01	ci right 2.886400e-01	k: 181138	n:630000
KS ci ratio: 1.016725e-01	ci left: 2.234256e-03	ci right 2.475118e-03	k: 1482	n:630000
DNHD1   630000 perm   497 sec   (1267 perm/sec)   p_kst 2.352381e-03   p_cons 2.875206e-01   p_joint 4.877778e-03

Joint ci ratio: 8.663046e-02	ci left: 3.050873e-03	ci right 3.328654e-03	k: 2040	n:640000
Cons ci ratio: 7.880624e-03	ci left: 2.777157e-01	ci right 2.799144e-01	k: 178441	n:640000
KS ci ratio: 1.009267e-01	ci left: 2.232850e-03	ci right 2.471690e-03	k: 1504	n:640000
DNHD1   640000 perm   508 sec   (1261 perm/sec)   p_kst 2.350000e-03   p_cons 2.788141e-01   p_joint 3.187500e-03

Joint ci ratio: 8.579330e-02	ci left: 3.064149e-03	ci right 3.340308e-03	k: 2080	n:650000
Cons ci ratio: 7.818517e-03	ci left: 2.777885e-01	ci right 2.799704e-01	k: 181271	n:650000
KS ci ratio: 1.002630e-01	ci left: 2.228493e-03	ci right 2.465208e-03	k: 1524	n:650000
DNHD1   650000 perm   519 sec   (1254 perm/sec)   p_kst 2.344615e-03   p_cons 2.788785e-01   p_joint 3.200000e-03

Joint ci ratio: 8.565100e-02	ci left: 3.028099e-03	ci right 3.300533e-03	k: 2087	n:660000
Cons ci ratio: 7.759697e-03	ci left: 2.777638e-01	ci right 2.799290e-01	k: 184038	n:660000
KS ci ratio: 9.948321e-02	ci left: 2.230184e-03	ci right 2.465128e-03	k: 1548	n:660000
DNHD1   660000 perm   530 sec   (1246 perm/sec)   p_kst 2.345455e-03   p_cons 2.788455e-01   p_joint 3.162121e-03

Outputting figure to mutsig2_images.part000000000052/DNHD1.10_14435_660000_0.0023455_0.27885_0.0031621.png
                gene_name: DNHD1
               theta_stop: 0.099 
                    nperm: 660000 
                     p_ks: 0.0023 
        ci_ks_bounds_left: 0.0022 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0032 
     ci_joint_bounds_left: 0.0030 
    ci_joint_bounds_right: 0.0033 

Current progress: 21 percent done.
DNTTIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
DNTTIP2   10000 perm   2 sec   (5102 perm/sec)   p_kst 6.552000e-01   p_cons 2.069000e-01   p_joint 4.537000e-01

Outputting figure to mutsig2_images.part000000000052/DNTTIP2.10_2299_10000_0.6552_0.2069_0.4537.png
                gene_name: DNTTIP2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 23 percent done.
DOPEY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
Cons ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
KS ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
DOPEY2   10000 perm   3 sec   (3324 perm/sec)   p_kst 8.092000e-01   p_cons 2.243000e-01   p_joint 5.623000e-01

Outputting figure to mutsig2_images.part000000000052/DOPEY2.10_7041_10000_0.8092_0.2243_0.5623.png
                gene_name: DOPEY2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 25 percent done.
DPYS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
Cons ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
KS ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
DPYS   10000 perm   2 sec   (5011 perm/sec)   p_kst 7.182000e-01   p_cons 6.123000e-01   p_joint 8.251000e-01

Outputting figure to mutsig2_images.part000000000052/DPYS.10_1596_10000_0.7182_0.6123_0.8251.png
                gene_name: DPYS
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 26 percent done.
DOCK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
Cons ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
KS ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
DOCK9   10000 perm   3 sec   (3282 perm/sec)   p_kst 5.590000e-02   p_cons 6.559000e-01   p_joint 1.189000e-01

Joint ci ratio: 5.735210e-02	ci left: 1.838912e-01	ci right 1.947992e-01	k: 3786	n:20000
Cons ci ratio: 1.986295e-02	ci left: 6.540901e-01	ci right 6.672631e-01	k: 13214	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
DOCK9   20000 perm   7 sec   (3059 perm/sec)   p_kst 5.360000e-02   p_cons 6.607000e-01   p_joint 1.893000e-01

Joint ci ratio: 5.153700e-02	ci left: 1.574840e-01	ci right 1.658482e-01	k: 4849	n:30000
Cons ci ratio: 1.618329e-02	ci left: 6.562805e-01	ci right 6.670215e-01	k: 19850	n:30000
KS ci ratio: 9.432627e-02	ci left: 5.186009e-02	ci right 5.702663e-02	k: 1632	n:30000
DOCK9   30000 perm   10 sec   (2961 perm/sec)   p_kst 5.440000e-02   p_cons 6.616667e-01   p_joint 1.616333e-01

Outputting figure to mutsig2_images.part000000000052/DOCK9.9_6625_30000_0.0544_0.66167_0.16163.png
                gene_name: DOCK9
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 28 percent done.
DOCK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
Cons ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
KS ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
DOCK5   10000 perm   3 sec   (3612 perm/sec)   p_kst 6.938000e-01   p_cons 2.209000e-01   p_joint 5.778000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK5.8_5821_10000_0.6938_0.2209_0.5778.png
                gene_name: DOCK5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 30 percent done.
DOCK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
Cons ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
KS ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
DOCK8   10000 perm   3 sec   (3490 perm/sec)   p_kst 3.908000e-01   p_cons 2.020000e-01   p_joint 3.059000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK8.8_6492_10000_0.3908_0.202_0.3059.png
                gene_name: DOCK8
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 32 percent done.
DOT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
Cons ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
DOT1L   10000 perm   3 sec   (3952 perm/sec)   p_kst 5.482000e-01   p_cons 2.200000e-01   p_joint 5.501000e-01

Outputting figure to mutsig2_images.part000000000052/DOT1L.8_4726_10000_0.5482_0.22_0.5501.png
                gene_name: DOT1L
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 33 percent done.
DPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
Cons ci ratio: 2.408115e-02	ci left: 7.171434e-01	ci right 7.347248e-01	k: 7260	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
DPP4   10000 perm   2 sec   (4807 perm/sec)   p_kst 1.904000e-01   p_cons 7.260000e-01   p_joint 3.166000e-01

Outputting figure to mutsig2_images.part000000000052/DPP4.8_2405_10000_0.1904_0.726_0.3166.png
                gene_name: DPP4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 35 percent done.
DOCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
Cons ci ratio: 3.284314e-02	ci left: 5.777771e-01	ci right 5.971719e-01	k: 5875	n:10000
KS ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
DOCK1   10000 perm   3 sec   (3409 perm/sec)   p_kst 2.832000e-01   p_cons 5.875000e-01   p_joint 4.256000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK1.7_5806_10000_0.2832_0.5875_0.4256.png
                gene_name: DOCK1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 37 percent done.
DPEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
KS ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
DPEP3   10000 perm   2 sec   (5521 perm/sec)   p_kst 6.517000e-01   p_cons 7.440000e-02   p_joint 2.446000e-01

Joint ci ratio: 4.711129e-02	ci left: 2.510538e-01	ci right 2.632169e-01	k: 5142	n:20000
Cons ci ratio: 9.477110e-02	ci left: 7.505352e-02	ci right 8.256947e-02	k: 1575	n:20000
KS ci ratio: 2.024748e-02	ci left: 6.454019e-01	ci right 6.586538e-01	k: 13041	n:20000
DPEP3   20000 perm   4 sec   (4904 perm/sec)   p_kst 6.520500e-01   p_cons 7.875000e-02   p_joint 2.571000e-01

Outputting figure to mutsig2_images.part000000000052/DPEP3.7_1582_20000_0.65205_0.07875_0.2571.png
                gene_name: DPEP3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 39 percent done.
DPY19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
Cons ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KS ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
DPY19L2   10000 perm   2 sec   (5167 perm/sec)   p_kst 4.153000e-01   p_cons 8.816000e-01   p_joint 6.956000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L2.7_2365_10000_0.4153_0.8816_0.6956.png
                gene_name: DPY19L2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 40 percent done.
DOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
DOCK3   10000 perm   3 sec   (3589 perm/sec)   p_kst 9.080000e-02   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
Cons ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
KS ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
DOCK3   20000 perm   6 sec   (3228 perm/sec)   p_kst 9.325000e-02   p_cons 1.500000e-04   p_joint 5.800000e-03

Joint ci ratio: 4.271008e-01	ci left: 2.204219e-03	ci right 3.428562e-03	k: 83	n:30000
Cons ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
KS ci ratio: 7.117087e-02	ci left: 8.855559e-02	ci right 9.512370e-02	k: 2754	n:30000
DOCK3   30000 perm   10 sec   (3122 perm/sec)   p_kst 9.180000e-02   p_cons 1.333333e-04   p_joint 2.766667e-03

Joint ci ratio: 3.784488e-01	ci left: 2.170097e-03	ci right 3.204209e-03	k: 106	n:40000
Cons ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
KS ci ratio: 6.150089e-02	ci left: 8.935735e-02	ci right 9.505201e-02	k: 3687	n:40000
DOCK3   40000 perm   13 sec   (3064 perm/sec)   p_kst 9.217500e-02   p_cons 1.000000e-04   p_joint 2.650000e-03

Joint ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
Cons ci ratio: 1.752972e+00	ci left: 2.179772e-05	ci right 2.048190e-04	k: 4	n:50000
KS ci ratio: 5.533939e-02	ci left: 8.867058e-02	ci right 9.373699e-02	k: 4559	n:50000
DOCK3   50000 perm   17 sec   (3007 perm/sec)   p_kst 9.118000e-02   p_cons 8.000000e-05   p_joint 1.940000e-03

Joint ci ratio: 3.667896e-01	ci left: 1.552377e-03	ci right 2.263855e-03	k: 113	n:60000
Cons ci ratio: 1.752990e+00	ci left: 1.816471e-05	ci right 1.706843e-04	k: 4	n:60000
KS ci ratio: 5.055337e-02	ci left: 8.877608e-02	ci right 9.339689e-02	k: 5464	n:60000
DOCK3   60000 perm   20 sec   (2948 perm/sec)   p_kst 9.106667e-02   p_cons 6.666667e-05   p_joint 1.883333e-03

Joint ci ratio: 3.502998e-01	ci left: 1.473592e-03	ci right 2.111702e-03	k: 124	n:70000
Cons ci ratio: 1.753002e+00	ci left: 1.556972e-05	ci right 1.463019e-04	k: 4	n:70000
KS ci ratio: 4.681078e-02	ci left: 8.892165e-02	ci right 9.319804e-02	k: 6373	n:70000
DOCK3   70000 perm   24 sec   (2904 perm/sec)   p_kst 9.104286e-02   p_cons 5.714286e-05   p_joint 1.771429e-03

Joint ci ratio: 3.560918e-01	ci left: 1.243801e-03	ci right 1.793369e-03	k: 120	n:80000
Cons ci ratio: 1.753012e+00	ci left: 1.362348e-05	ci right 1.280149e-04	k: 4	n:80000
KS ci ratio: 4.372009e-02	ci left: 8.931265e-02	ci right 9.331705e-02	k: 7304	n:80000
DOCK3   80000 perm   28 sec   (2866 perm/sec)   p_kst 9.130000e-02   p_cons 5.000000e-05   p_joint 1.500000e-03

Joint ci ratio: 3.787333e-01	ci left: 9.643656e-04	ci right 1.424313e-03	k: 106	n:90000
Cons ci ratio: 1.600271e+00	ci left: 1.803898e-05	ci right 1.296433e-04	k: 5	n:90000
KS ci ratio: 4.124769e-02	ci left: 8.931576e-02	ci right 9.308841e-02	k: 8207	n:90000
DOCK3   90000 perm   32 sec   (2831 perm/sec)   p_kst 9.118889e-02   p_cons 5.555556e-05   p_joint 1.177778e-03

Joint ci ratio: 3.787560e-01	ci left: 8.679202e-04	ci right 1.281897e-03	k: 106	n:100000
Cons ci ratio: 1.481561e+00	ci left: 2.201925e-05	ci right 1.305901e-04	k: 6	n:100000
KS ci ratio: 3.922336e-02	ci left: 8.902606e-02	ci right 9.259771e-02	k: 9080	n:100000
DOCK3   100000 perm   36 sec   (2799 perm/sec)   p_kst 9.080000e-02   p_cons 6.000000e-05   p_joint 1.060000e-03

Joint ci ratio: 4.130333e-01	ci left: 6.498153e-04	ci right 9.955631e-04	k: 89	n:110000
Cons ci ratio: 1.481567e+00	ci left: 2.001748e-05	ci right 1.187187e-04	k: 6	n:110000
KS ci ratio: 3.730179e-02	ci left: 8.953198e-02	ci right 9.294415e-02	k: 10035	n:110000
DOCK3   110000 perm   40 sec   (2763 perm/sec)   p_kst 9.122727e-02   p_cons 5.454545e-05   p_joint 8.090909e-04

Joint ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
Cons ci ratio: 1.481571e+00	ci left: 1.834933e-05	ci right 1.088257e-04	k: 6	n:120000
KS ci ratio: 3.520368e-02	ci left: 9.199901e-02	ci right 9.530399e-02	k: 11237	n:120000
DOCK3   120000 perm   44 sec   (2731 perm/sec)   p_kst 9.364167e-02   p_cons 5.000000e-05   p_joint 5.416667e-04

Joint ci ratio: 4.525103e-01	ci left: 4.469942e-04	ci right 7.145652e-04	k: 74	n:130000
Cons ci ratio: 1.481575e+00	ci left: 1.693783e-05	ci right 1.004548e-04	k: 6	n:130000
KS ci ratio: 3.384946e-02	ci left: 9.193028e-02	ci right 9.510326e-02	k: 12156	n:130000
DOCK3   130000 perm   48 sec   (2697 perm/sec)   p_kst 9.350769e-02   p_cons 4.615385e-05   p_joint 5.692308e-04

Joint ci ratio: 4.898862e-01	ci left: 3.458091e-04	ci right 5.757093e-04	k: 63	n:140000
Cons ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
KS ci ratio: 3.263625e-02	ci left: 9.189476e-02	ci right 9.495068e-02	k: 13078	n:140000
DOCK3   140000 perm   53 sec   (2664 perm/sec)   p_kst 9.341429e-02   p_cons 4.285714e-05   p_joint 4.500000e-04

Joint ci ratio: 4.898938e-01	ci left: 3.227542e-04	ci right 5.373309e-04	k: 63	n:150000
Cons ci ratio: 1.481581e+00	ci left: 1.467943e-05	ci right 8.706111e-05	k: 6	n:150000
KS ci ratio: 3.148901e-02	ci left: 9.216362e-02	ci right 9.511878e-02	k: 14045	n:150000
DOCK3   150000 perm   57 sec   (2626 perm/sec)   p_kst 9.363333e-02   p_cons 4.000000e-05   p_joint 4.200000e-04

Joint ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
Cons ci ratio: 1.481584e+00	ci left: 1.376196e-05	ci right 8.161991e-05	k: 6	n:160000
KS ci ratio: 3.053680e-02	ci left: 9.194738e-02	ci right 9.480487e-02	k: 14939	n:160000
DOCK3   160000 perm   62 sec   (2595 perm/sec)   p_kst 9.336875e-02   p_cons 3.750000e-05   p_joint 4.000000e-04

Joint ci ratio: 5.102505e-01	ci left: 2.590795e-04	ci right 4.410277e-04	k: 58	n:170000
Cons ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
KS ci ratio: 2.966294e-02	ci left: 9.177532e-02	ci right 9.454445e-02	k: 15836	n:170000
DOCK3   170000 perm   66 sec   (2561 perm/sec)   p_kst 9.315294e-02   p_cons 3.529412e-05   p_joint 3.411765e-04

Joint ci ratio: 6.197358e-01	ci left: 1.540756e-04	ci right 2.961787e-04	k: 39	n:180000
Cons ci ratio: 1.481588e+00	ci left: 1.223284e-05	ci right 7.255121e-05	k: 6	n:180000
KS ci ratio: 2.877575e-02	ci left: 9.211468e-02	ci right 9.480954e-02	k: 16822	n:180000
DOCK3   180000 perm   71 sec   (2533 perm/sec)   p_kst 9.345556e-02   p_cons 3.333333e-05   p_joint 2.166667e-04

Joint ci ratio: 6.121335e-01	ci left: 1.504072e-04	ci right 2.866662e-04	k: 40	n:190000
Cons ci ratio: 1.481590e+00	ci left: 1.158900e-05	ci right 6.873280e-05	k: 6	n:190000
KS ci ratio: 2.798880e-02	ci left: 9.226773e-02	ci right 9.489205e-02	k: 17779	n:190000
DOCK3   190000 perm   76 sec   (2505 perm/sec)   p_kst 9.357368e-02   p_cons 3.157895e-05   p_joint 2.105263e-04

Joint ci ratio: 5.977286e-01	ci left: 1.513536e-04	ci right 2.838485e-04	k: 42	n:200000
Cons ci ratio: 1.481591e+00	ci left: 1.100955e-05	ci right 6.529622e-05	k: 6	n:200000
KS ci ratio: 2.726869e-02	ci left: 9.237159e-02	ci right 9.493020e-02	k: 18729	n:200000
DOCK3   200000 perm   81 sec   (2477 perm/sec)   p_kst 9.364500e-02   p_cons 3.000000e-05   p_joint 2.100000e-04

Joint ci ratio: 5.717254e-01	ci left: 1.603747e-04	ci right 2.921681e-04	k: 46	n:210000
Cons ci ratio: 1.481593e+00	ci left: 1.048528e-05	ci right 6.218693e-05	k: 6	n:210000
KS ci ratio: 2.659548e-02	ci left: 9.250421e-02	ci right 9.500226e-02	k: 19687	n:210000
DOCK3   210000 perm   86 sec   (2452 perm/sec)   p_kst 9.374762e-02   p_cons 2.857143e-05   p_joint 2.190476e-04

Joint ci ratio: 5.435407e-01	ci left: 1.726086e-04	ci right 3.047870e-04	k: 51	n:220000
Cons ci ratio: 1.481594e+00	ci left: 1.000867e-05	ci right 5.936029e-05	k: 6	n:220000
KS ci ratio: 2.596979e-02	ci left: 9.262547e-02	ci right 9.506707e-02	k: 20645	n:220000
DOCK3   220000 perm   91 sec   (2425 perm/sec)   p_kst 9.384091e-02   p_cons 2.727273e-05   p_joint 2.318182e-04

Joint ci ratio: 5.383902e-01	ci left: 1.688570e-04	ci right 2.964725e-04	k: 52	n:230000
Cons ci ratio: 1.481595e+00	ci left: 9.573512e-06	ci right 5.677945e-05	k: 6	n:230000
KS ci ratio: 2.539796e-02	ci left: 9.265899e-02	ci right 9.504691e-02	k: 21585	n:230000
DOCK3   230000 perm   96 sec   (2401 perm/sec)   p_kst 9.384783e-02   p_cons 2.608696e-05   p_joint 2.260870e-04

Joint ci ratio: 5.977396e-01	ci left: 1.261274e-04	ci right 2.365419e-04	k: 42	n:240000
Cons ci ratio: 1.481596e+00	ci left: 9.174613e-06	ci right 5.441367e-05	k: 6	n:240000
KS ci ratio: 2.484891e-02	ci left: 9.278142e-02	ci right 9.512006e-02	k: 22547	n:240000
DOCK3   240000 perm   101 sec   (2376 perm/sec)   p_kst 9.394583e-02   p_cons 2.500000e-05   p_joint 1.750000e-04

Joint ci ratio: 5.779181e-01	ci left: 1.312962e-04	ci right 2.408468e-04	k: 45	n:250000
Cons ci ratio: 1.385904e+00	ci left: 1.125752e-05	ci right 5.768985e-05	k: 7	n:250000
KS ci ratio: 2.431517e-02	ci left: 9.302585e-02	ci right 9.531957e-02	k: 23542	n:250000
DOCK3   250000 perm   106 sec   (2350 perm/sec)   p_kst 9.416800e-02   p_cons 2.800000e-05   p_joint 1.800000e-04

Joint ci ratio: 5.657499e-01	ci left: 1.328254e-04	ci right 2.403776e-04	k: 47	n:260000
Cons ci ratio: 1.385905e+00	ci left: 1.082454e-05	ci right 5.547104e-05	k: 7	n:260000
KS ci ratio: 2.385306e-02	ci left: 9.297651e-02	ci right 9.522485e-02	k: 24465	n:260000
DOCK3   260000 perm   112 sec   (2327 perm/sec)   p_kst 9.409615e-02   p_cons 2.692308e-05   p_joint 1.807692e-04

Joint ci ratio: 5.657519e-01	ci left: 1.279058e-04	ci right 2.314750e-04	k: 47	n:270000
Cons ci ratio: 1.385906e+00	ci left: 1.042363e-05	ci right 5.341658e-05	k: 7	n:270000
KS ci ratio: 2.341022e-02	ci left: 9.297543e-02	ci right 9.518144e-02	k: 25400	n:270000
DOCK3   270000 perm   117 sec   (2303 perm/sec)   p_kst 9.407407e-02   p_cons 2.592593e-05   p_joint 1.740741e-04

Joint ci ratio: 5.543212e-01	ci left: 1.294687e-04	ci right 2.313528e-04	k: 49	n:280000
Cons ci ratio: 1.385907e+00	ci left: 1.005135e-05	ci right 5.150887e-05	k: 7	n:280000
KS ci ratio: 2.297624e-02	ci left: 9.308493e-02	ci right 9.525205e-02	k: 26366	n:280000
DOCK3   280000 perm   123 sec   (2278 perm/sec)   p_kst 9.416429e-02   p_cons 2.500000e-05   p_joint 1.750000e-04

Joint ci ratio: 5.543230e-01	ci left: 1.250042e-04	ci right 2.233753e-04	k: 49	n:290000
Cons ci ratio: 1.306644e+00	ci left: 1.190984e-05	ci right 5.435510e-05	k: 8	n:290000
KS ci ratio: 2.261214e-02	ci left: 9.283728e-02	ci right 9.496394e-02	k: 27230	n:290000
DOCK3   290000 perm   129 sec   (2256 perm/sec)   p_kst 9.389655e-02   p_cons 2.758621e-05   p_joint 1.689655e-04

Joint ci ratio: 5.779272e-01	ci left: 1.094131e-04	ci right 2.007067e-04	k: 45	n:300000
Cons ci ratio: 1.306645e+00	ci left: 1.151284e-05	ci right 5.254328e-05	k: 8	n:300000
KS ci ratio: 2.224036e-02	ci left: 9.279215e-02	ci right 9.488237e-02	k: 28150	n:300000
DOCK3   300000 perm   134 sec   (2235 perm/sec)   p_kst 9.383333e-02   p_cons 2.666667e-05   p_joint 1.500000e-04

Joint ci ratio: 5.717465e-01	ci left: 1.086400e-04	ci right 1.979227e-04	k: 46	n:310000
Cons ci ratio: 1.306646e+00	ci left: 1.114146e-05	ci right 5.084836e-05	k: 8	n:310000
KS ci ratio: 2.189007e-02	ci left: 9.272130e-02	ci right 9.477662e-02	k: 29061	n:310000
DOCK3   310000 perm   140 sec   (2212 perm/sec)   p_kst 9.374516e-02   p_cons 2.580645e-05   p_joint 1.483871e-04

Joint ci ratio: 5.488652e-01	ci left: 1.159739e-04	ci right 2.059910e-04	k: 50	n:320000
Cons ci ratio: 1.306646e+00	ci left: 1.079329e-05	ci right 4.925937e-05	k: 8	n:320000
KS ci ratio: 2.154195e-02	ci left: 9.276398e-02	ci right 9.478714e-02	k: 30007	n:320000
DOCK3   320000 perm   146 sec   (2191 perm/sec)   p_kst 9.377188e-02   p_cons 2.500000e-05   p_joint 1.562500e-04

Joint ci ratio: 5.488665e-01	ci left: 1.124595e-04	ci right 1.997490e-04	k: 50	n:330000
Cons ci ratio: 1.306647e+00	ci left: 1.046621e-05	ci right 4.776668e-05	k: 8	n:330000
KS ci ratio: 2.121787e-02	ci left: 9.274098e-02	ci right 9.473283e-02	k: 30932	n:330000
DOCK3   330000 perm   152 sec   (2170 perm/sec)   p_kst 9.373333e-02   p_cons 2.424242e-05   p_joint 1.515152e-04

Joint ci ratio: 5.435638e-01	ci left: 1.116868e-04	ci right 1.972176e-04	k: 51	n:340000
Cons ci ratio: 1.306647e+00	ci left: 1.015838e-05	ci right 4.636179e-05	k: 8	n:340000
KS ci ratio: 2.089027e-02	ci left: 9.286299e-02	ci right 9.482630e-02	k: 31906	n:340000
DOCK3   340000 perm   158 sec   (2149 perm/sec)   p_kst 9.384118e-02   p_cons 2.352941e-05   p_joint 1.500000e-04

Joint ci ratio: 5.334025e-01	ci left: 1.134324e-04	ci right 1.980677e-04	k: 53	n:350000
Cons ci ratio: 1.306648e+00	ci left: 9.868142e-06	ci right 4.503718e-05	k: 8	n:350000
KS ci ratio: 2.058914e-02	ci left: 9.288155e-02	ci right 9.481661e-02	k: 32846	n:350000
DOCK3   350000 perm   164 sec   (2131 perm/sec)   p_kst 9.384571e-02   p_cons 2.285714e-05   p_joint 1.514286e-04

Joint ci ratio: 5.237906e-01	ci left: 1.150951e-04	ci right 1.988567e-04	k: 55	n:360000
Cons ci ratio: 1.306649e+00	ci left: 9.594026e-06	ci right 4.378616e-05	k: 8	n:360000
KS ci ratio: 2.029138e-02	ci left: 9.297670e-02	ci right 9.488540e-02	k: 33814	n:360000
DOCK3   360000 perm   170 sec   (2112 perm/sec)   p_kst 9.392778e-02   p_cons 2.222222e-05   p_joint 1.527778e-04

Joint ci ratio: 5.146802e-01	ci left: 1.166811e-04	ci right 1.995904e-04	k: 57	n:370000
Cons ci ratio: 1.306649e+00	ci left: 9.334726e-06	ci right 4.260277e-05	k: 8	n:370000
KS ci ratio: 2.002207e-02	ci left: 9.293236e-02	ci right 9.481454e-02	k: 34732	n:370000
DOCK3   370000 perm   177 sec   (2093 perm/sec)   p_kst 9.387027e-02   p_cons 2.162162e-05   p_joint 1.540541e-04

Joint ci ratio: 5.060292e-01	ci left: 1.181955e-04	ci right 2.002737e-04	k: 59	n:380000
Cons ci ratio: 1.239595e+00	ci left: 1.082998e-05	ci right 4.495953e-05	k: 9	n:380000
KS ci ratio: 1.976963e-02	ci left: 9.283551e-02	ci right 9.469175e-02	k: 35629	n:380000
DOCK3   380000 perm   183 sec   (2075 perm/sec)   p_kst 9.376053e-02   p_cons 2.368421e-05   p_joint 1.552632e-04

Joint ci ratio: 5.435693e-01	ci left: 9.736778e-05	ci right 1.719338e-04	k: 51	n:390000
Cons ci ratio: 1.239595e+00	ci left: 1.055229e-05	ci right 4.380673e-05	k: 9	n:390000
KS ci ratio: 1.950795e-02	ci left: 9.290459e-02	ci right 9.473735e-02	k: 36589	n:390000
DOCK3   390000 perm   190 sec   (2056 perm/sec)   p_kst 9.381795e-02   p_cons 2.307692e-05   p_joint 1.307692e-04

Joint ci ratio: 5.384171e-01	ci left: 9.709169e-05	ci right 1.704743e-04	k: 52	n:400000
Cons ci ratio: 1.239596e+00	ci left: 1.028848e-05	ci right 4.271158e-05	k: 9	n:400000
KS ci ratio: 1.927338e-02	ci left: 9.282102e-02	ci right 9.462987e-02	k: 37489	n:400000
DOCK3   400000 perm   196 sec   (2038 perm/sec)   p_kst 9.372250e-02   p_cons 2.250000e-05   p_joint 1.300000e-04

Joint ci ratio: 5.657695e-01	ci left: 8.423004e-05	ci right 1.524362e-04	k: 47	n:410000
Cons ci ratio: 1.239596e+00	ci left: 1.003754e-05	ci right 4.166984e-05	k: 9	n:410000
KS ci ratio: 1.903286e-02	ci left: 9.286795e-02	ci right 9.465487e-02	k: 38441	n:410000
DOCK3   410000 perm   203 sec   (2021 perm/sec)   p_kst 9.375854e-02   p_cons 2.195122e-05   p_joint 1.146341e-04

Joint ci ratio: 5.599667e-01	ci left: 8.426643e-05	ci right 1.515235e-04	k: 48	n:420000
Cons ci ratio: 1.239597e+00	ci left: 9.798553e-06	ci right 4.067771e-05	k: 9	n:420000
KS ci ratio: 1.880270e-02	ci left: 9.289854e-02	ci right 9.466421e-02	k: 39387	n:420000
DOCK3   420000 perm   210 sec   (2001 perm/sec)   p_kst 9.377857e-02   p_cons 2.142857e-05   p_joint 1.142857e-04

Joint ci ratio: 5.599674e-01	ci left: 8.230672e-05	ci right 1.479997e-04	k: 48	n:430000
Cons ci ratio: 1.239597e+00	ci left: 9.570678e-06	ci right 3.973173e-05	k: 9	n:430000
KS ci ratio: 1.857257e-02	ci left: 9.300195e-02	ci right 9.474771e-02	k: 40365	n:430000
DOCK3   430000 perm   217 sec   (1984 perm/sec)   p_kst 9.387209e-02   p_cons 2.093023e-05   p_joint 1.116279e-04

Joint ci ratio: 5.488774e-01	ci left: 8.434424e-05	ci right 1.498127e-04	k: 50	n:440000
Cons ci ratio: 1.239597e+00	ci left: 9.353162e-06	ci right 3.882874e-05	k: 9	n:440000
KS ci ratio: 1.835779e-02	ci left: 9.303514e-02	ci right 9.476112e-02	k: 41314	n:440000
DOCK3   440000 perm   224 sec   (1968 perm/sec)   p_kst 9.389545e-02   p_cons 2.045455e-05   p_joint 1.136364e-04

Joint ci ratio: 5.384211e-01	ci left: 8.630358e-05	ci right 1.515330e-04	k: 52	n:450000
Cons ci ratio: 1.239598e+00	ci left: 9.145313e-06	ci right 3.796589e-05	k: 9	n:450000
KS ci ratio: 1.815836e-02	ci left: 9.299172e-02	ci right 9.469796e-02	k: 42229	n:450000
DOCK3   450000 perm   231 sec   (1952 perm/sec)   p_kst 9.384222e-02   p_cons 2.000000e-05   p_joint 1.155556e-04

Joint ci ratio: 5.285405e-01	ci left: 8.818915e-05	ci right 1.531674e-04	k: 54	n:460000
Cons ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
KS ci ratio: 1.797586e-02	ci left: 9.285069e-02	ci right 9.453704e-02	k: 43098	n:460000
DOCK3   460000 perm   238 sec   (1936 perm/sec)   p_kst 9.369130e-02   p_cons 2.173913e-05   p_joint 1.173913e-04

Joint ci ratio: 5.238003e-01	ci left: 8.815762e-05	ci right 1.523166e-04	k: 55	n:470000
Cons ci ratio: 1.131591e+00	ci left: 1.168338e-05	ci right 4.187629e-05	k: 11	n:470000
KS ci ratio: 1.778247e-02	ci left: 9.287045e-02	ci right 9.453882e-02	k: 44040	n:470000
DOCK3   470000 perm   245 sec   (1920 perm/sec)   p_kst 9.370213e-02   p_cons 2.340426e-05   p_joint 1.170213e-04

Joint ci ratio: 5.238009e-01	ci left: 8.632098e-05	ci right 1.491434e-04	k: 55	n:480000
Cons ci ratio: 1.131591e+00	ci left: 1.143997e-05	ci right 4.100388e-05	k: 11	n:480000
KS ci ratio: 1.759368e-02	ci left: 9.290400e-02	ci right 9.455508e-02	k: 44989	n:480000
DOCK3   480000 perm   252 sec   (1902 perm/sec)   p_kst 9.372708e-02   p_cons 2.291667e-05   p_joint 1.145833e-04

Joint ci ratio: 5.191860e-01	ci left: 8.633132e-05	ci right 1.484070e-04	k: 56	n:490000
Cons ci ratio: 1.131592e+00	ci left: 1.120650e-05	ci right 4.016707e-05	k: 11	n:490000
KS ci ratio: 1.740451e-02	ci left: 9.299725e-02	ci right 9.463204e-02	k: 45968	n:490000
DOCK3   490000 perm   260 sec   (1887 perm/sec)   p_kst 9.381224e-02   p_cons 2.244898e-05   p_joint 1.142857e-04

Joint ci ratio: 5.146908e-01	ci left: 8.634359e-05	ci right 1.476977e-04	k: 57	n:500000
Cons ci ratio: 1.131592e+00	ci left: 1.098237e-05	ci right 3.936374e-05	k: 11	n:500000
KS ci ratio: 1.722860e-02	ci left: 9.301515e-02	ci right 9.463356e-02	k: 46911	n:500000
DOCK3   500000 perm   267 sec   (1872 perm/sec)   p_kst 9.382200e-02   p_cons 2.200000e-05   p_joint 1.140000e-04

Joint ci ratio: 5.060396e-01	ci left: 8.806688e-05	ci right 1.492244e-04	k: 59	n:510000
Cons ci ratio: 1.131592e+00	ci left: 1.076703e-05	ci right 3.859190e-05	k: 11	n:510000
KS ci ratio: 1.705733e-02	ci left: 9.303828e-02	ci right 9.464085e-02	k: 47857	n:510000
DOCK3   510000 perm   275 sec   (1858 perm/sec)   p_kst 9.383725e-02   p_cons 2.156863e-05   p_joint 1.156863e-04

Joint ci ratio: 4.978103e-01	ci left: 8.973224e-05	ci right 1.506841e-04	k: 61	n:520000
Cons ci ratio: 1.131592e+00	ci left: 1.055997e-05	ci right 3.784976e-05	k: 11	n:520000
KS ci ratio: 1.689298e-02	ci left: 9.304144e-02	ci right 9.462847e-02	k: 48793	n:520000
DOCK3   520000 perm   282 sec   (1843 perm/sec)   p_kst 9.383269e-02   p_cons 2.115385e-05   p_joint 1.173077e-04

Joint ci ratio: 4.978109e-01	ci left: 8.803916e-05	ci right 1.478411e-04	k: 61	n:530000
Cons ci ratio: 1.131593e+00	ci left: 1.036072e-05	ci right 3.713562e-05	k: 11	n:530000
KS ci ratio: 1.673143e-02	ci left: 9.306335e-02	ci right 9.463543e-02	k: 49739	n:530000
DOCK3   530000 perm   290 sec   (1829 perm/sec)   p_kst 9.384717e-02   p_cons 2.075472e-05   p_joint 1.150943e-04

Joint ci ratio: 5.543455e-01	ci left: 6.713123e-05	ci right 1.199623e-04	k: 49	n:540000
Cons ci ratio: 1.087198e+00	ci left: 1.148260e-05	ci right 3.881743e-05	k: 12	n:540000
KS ci ratio: 1.657263e-02	ci left: 9.310297e-02	ci right 9.466065e-02	k: 50695	n:540000
DOCK3   540000 perm   297 sec   (1816 perm/sec)   p_kst 9.387963e-02   p_cons 2.222222e-05   p_joint 9.074074e-05

Joint ci ratio: 5.543460e-01	ci left: 6.591065e-05	ci right 1.177812e-04	k: 49	n:550000
Cons ci ratio: 1.087199e+00	ci left: 1.127382e-05	ci right 3.811166e-05	k: 12	n:550000
KS ci ratio: 1.642212e-02	ci left: 9.310137e-02	ci right 9.464473e-02	k: 51629	n:550000
DOCK3   550000 perm   305 sec   (1802 perm/sec)   p_kst 9.387091e-02   p_cons 2.181818e-05   p_joint 8.909091e-05

Joint ci ratio: 5.488843e-01	ci left: 6.627028e-05	ci right 1.177104e-04	k: 50	n:560000
Cons ci ratio: 1.087199e+00	ci left: 1.107250e-05	ci right 3.743110e-05	k: 12	n:560000
KS ci ratio: 1.628180e-02	ci left: 9.303583e-02	ci right 9.456481e-02	k: 52527	n:560000
DOCK3   560000 perm   313 sec   (1789 perm/sec)   p_kst 9.379821e-02   p_cons 2.142857e-05   p_joint 8.928571e-05

Joint ci ratio: 5.435809e-01	ci left: 6.661974e-05	ci right 1.176397e-04	k: 51	n:570000
Cons ci ratio: 1.047650e+00	ci left: 1.214383e-05	ci right 3.900038e-05	k: 13	n:570000
KS ci ratio: 1.613884e-02	ci left: 9.303732e-02	ci right 9.455278e-02	k: 53462	n:570000
DOCK3   570000 perm   321 sec   (1775 perm/sec)   p_kst 9.379298e-02   p_cons 2.280702e-05   p_joint 8.947368e-05

Joint ci ratio: 5.543473e-01	ci left: 6.250144e-05	ci right 1.116892e-04	k: 49	n:580000
Cons ci ratio: 1.047651e+00	ci left: 1.193445e-05	ci right 3.832796e-05	k: 13	n:580000
KS ci ratio: 1.600267e-02	ci left: 9.300618e-02	ci right 9.450823e-02	k: 54378	n:580000
DOCK3   580000 perm   329 sec   (1762 perm/sec)   p_kst 9.375517e-02   p_cons 2.241379e-05   p_joint 8.448276e-05

Joint ci ratio: 5.543478e-01	ci left: 6.144209e-05	ci right 1.097962e-04	k: 49	n:590000
Cons ci ratio: 1.047651e+00	ci left: 1.173217e-05	ci right 3.767834e-05	k: 13	n:590000
KS ci ratio: 1.586926e-02	ci left: 9.298290e-02	ci right 9.447194e-02	k: 55298	n:590000
DOCK3   590000 perm   337 sec   (1750 perm/sec)   p_kst 9.372542e-02   p_cons 2.203390e-05   p_joint 8.305085e-05

Joint ci ratio: 5.435822e-01	ci left: 6.328872e-05	ci right 1.117578e-04	k: 51	n:600000
Cons ci ratio: 1.047651e+00	ci left: 1.153664e-05	ci right 3.705037e-05	k: 13	n:600000
KS ci ratio: 1.574392e-02	ci left: 9.290897e-02	ci right 9.438496e-02	k: 56187	n:600000
DOCK3   600000 perm   345 sec   (1737 perm/sec)   p_kst 9.364500e-02   p_cons 2.166667e-05   p_joint 8.500000e-05

Joint ci ratio: 5.384296e-01	ci left: 6.366635e-05	ci right 1.117872e-04	k: 52	n:610000
Cons ci ratio: 1.047651e+00	ci left: 1.134751e-05	ci right 3.644300e-05	k: 13	n:610000
KS ci ratio: 1.561621e-02	ci left: 9.289468e-02	ci right 9.435837e-02	k: 57111	n:610000
DOCK3   610000 perm   354 sec   (1724 perm/sec)   p_kst 9.362459e-02   p_cons 2.131148e-05   p_joint 8.524590e-05

Joint ci ratio: 5.334208e-01	ci left: 6.403392e-05	ci right 1.118135e-04	k: 53	n:620000
Cons ci ratio: 1.047651e+00	ci left: 1.116449e-05	ci right 3.585521e-05	k: 13	n:620000
KS ci ratio: 1.548613e-02	ci left: 9.294037e-02	ci right 9.439247e-02	k: 58072	n:620000
DOCK3   620000 perm   362 sec   (1712 perm/sec)   p_kst 9.366452e-02   p_cons 2.096774e-05   p_joint 8.548387e-05

Joint ci ratio: 5.285492e-01	ci left: 6.439184e-05	ci right 1.118371e-04	k: 54	n:630000
Cons ci ratio: 1.047652e+00	ci left: 1.098727e-05	ci right 3.528608e-05	k: 13	n:630000
KS ci ratio: 1.536254e-02	ci left: 9.294827e-02	ci right 9.438880e-02	k: 59010	n:630000
DOCK3   630000 perm   371 sec   (1699 perm/sec)   p_kst 9.366667e-02   p_cons 2.063492e-05   p_joint 8.571429e-05

Joint ci ratio: 5.191932e-01	ci left: 6.609722e-05	ci right 1.136245e-04	k: 56	n:640000
Cons ci ratio: 1.047652e+00	ci left: 1.081559e-05	ci right 3.473474e-05	k: 13	n:640000
KS ci ratio: 1.523976e-02	ci left: 9.297933e-02	ci right 9.440873e-02	k: 59963	n:640000
DOCK3   640000 perm   379 sec   (1687 perm/sec)   p_kst 9.369219e-02   p_cons 2.031250e-05   p_joint 8.750000e-05

Joint ci ratio: 5.103170e-01	ci left: 6.775734e-05	ci right 1.153500e-04	k: 58	n:650000
Cons ci ratio: 1.012127e+00	ci left: 1.177533e-05	ci right 3.613761e-05	k: 14	n:650000
KS ci ratio: 1.512672e-02	ci left: 9.293282e-02	ci right 9.435081e-02	k: 60866	n:650000
DOCK3   650000 perm   388 sec   (1676 perm/sec)   p_kst 9.364000e-02   p_cons 2.153846e-05   p_joint 8.923077e-05

Joint ci ratio: 5.060464e-01	ci left: 6.805148e-05	ci right 1.153102e-04	k: 59	n:660000
Cons ci ratio: 1.012127e+00	ci left: 1.159691e-05	ci right 3.559008e-05	k: 14	n:660000
KS ci ratio: 1.501416e-02	ci left: 9.291040e-02	ci right 9.431741e-02	k: 61784	n:660000
DOCK3   660000 perm   397 sec   (1664 perm/sec)   p_kst 9.361212e-02   p_cons 2.121212e-05   p_joint 8.939394e-05

Joint ci ratio: 3.148253e-01	ci left: 1.949854e-04	ci right 2.691503e-04	k: 154	n:670000
Cons ci ratio: 9.799876e-01	ci left: 1.253048e-05	ci right 3.692543e-05	k: 15	n:670000
KS ci ratio: 1.490551e-02	ci left: 9.287233e-02	ci right 9.426850e-02	k: 62691	n:670000
DOCK3   670000 perm   405 sec   (1653 perm/sec)   p_kst 9.356866e-02   p_cons 2.238806e-05   p_joint 2.298507e-04

Joint ci ratio: 3.118220e-01	ci left: 1.961829e-04	ci right 2.699498e-04	k: 157	n:680000
Cons ci ratio: 9.799877e-01	ci left: 1.234621e-05	ci right 3.638241e-05	k: 15	n:680000
KS ci ratio: 1.479624e-02	ci left: 9.286913e-02	ci right 9.425493e-02	k: 63621	n:680000
DOCK3   680000 perm   414 sec   (1641 perm/sec)   p_kst 9.356029e-02   p_cons 2.205882e-05   p_joint 2.308824e-04

Joint ci ratio: 3.189699e-01	ci left: 1.839974e-04	ci right 2.550925e-04	k: 150	n:690000
Cons ci ratio: 9.799879e-01	ci left: 1.216728e-05	ci right 3.585514e-05	k: 15	n:690000
KS ci ratio: 1.468657e-02	ci left: 9.289783e-02	ci right 9.427370e-02	k: 64573	n:690000
DOCK3   690000 perm   423 sec   (1631 perm/sec)   p_kst 9.358406e-02   p_cons 2.173913e-05   p_joint 2.173913e-04

Joint ci ratio: 3.179192e-01	ci left: 1.826832e-04	ci right 2.529908e-04	k: 151	n:700000
Cons ci ratio: 9.799881e-01	ci left: 1.199346e-05	ci right 3.534292e-05	k: 15	n:700000
KS ci ratio: 1.458483e-02	ci left: 9.286168e-02	ci right 9.422740e-02	k: 65480	n:700000
DOCK3   700000 perm   432 sec   (1619 perm/sec)   p_kst 9.354286e-02   p_cons 2.142857e-05   p_joint 2.157143e-04

Joint ci ratio: 3.158481e-01	ci left: 1.827031e-04	ci right 2.524677e-04	k: 153	n:710000
Cons ci ratio: 9.507276e-01	ci left: 1.288087e-05	ci right 3.659551e-05	k: 16	n:710000
KS ci ratio: 1.448013e-02	ci left: 9.288554e-02	ci right 9.424172e-02	k: 66429	n:710000
DOCK3   710000 perm   441 sec   (1608 perm/sec)   p_kst 9.356197e-02   p_cons 2.253521e-05   p_joint 2.154930e-04

Joint ci ratio: 3.255053e-01	ci left: 1.686712e-04	ci right 2.354590e-04	k: 144	n:720000
Cons ci ratio: 9.507278e-01	ci left: 1.270197e-05	ci right 3.608725e-05	k: 16	n:720000
KS ci ratio: 1.437835e-02	ci left: 9.290046e-02	ci right 9.424725e-02	k: 67372	n:720000
DOCK3   720000 perm   451 sec   (1597 perm/sec)   p_kst 9.357222e-02   p_cons 2.222222e-05   p_joint 2.000000e-04

Joint ci ratio: 3.232834e-01	ci left: 1.688773e-04	ci right 2.351956e-04	k: 146	n:730000
Cons ci ratio: 9.507279e-01	ci left: 1.252797e-05	ci right 3.559290e-05	k: 16	n:730000
KS ci ratio: 1.427570e-02	ci left: 9.295051e-02	ci right 9.428833e-02	k: 68341	n:730000
DOCK3   730000 perm   460 sec   (1586 perm/sec)   p_kst 9.361781e-02   p_cons 2.191781e-05   p_joint 2.000000e-04

Joint ci ratio: 3.221896e-01	ci left: 1.678370e-04	ci right 2.334778e-04	k: 147	n:740000
Cons ci ratio: 9.507281e-01	ci left: 1.235867e-05	ci right 3.511192e-05	k: 16	n:740000
KS ci ratio: 1.417589e-02	ci left: 9.299116e-02	ci right 9.432013e-02	k: 69304	n:740000
DOCK3   740000 perm   470 sec   (1576 perm/sec)   p_kst 9.365405e-02   p_cons 2.162162e-05   p_joint 1.986486e-04

Joint ci ratio: 3.200344e-01	ci left: 1.680509e-04	ci right 2.332456e-04	k: 149	n:750000
Cons ci ratio: 9.507282e-01	ci left: 1.219389e-05	ci right 3.464377e-05	k: 16	n:750000
KS ci ratio: 1.407792e-02	ci left: 9.303342e-02	ci right 9.435372e-02	k: 70269	n:750000
DOCK3   750000 perm   479 sec   (1565 perm/sec)   p_kst 9.369200e-02   p_cons 2.133333e-05   p_joint 1.986667e-04

Joint ci ratio: 3.189732e-01	ci left: 1.670500e-04	ci right 2.315976e-04	k: 150	n:760000
Cons ci ratio: 9.239413e-01	ci left: 1.303048e-05	ci right 3.581377e-05	k: 17	n:760000
KS ci ratio: 1.398802e-02	ci left: 9.300114e-02	ci right 9.431249e-02	k: 71178	n:760000
DOCK3   760000 perm   489 sec   (1554 perm/sec)   p_kst 9.365526e-02   p_cons 2.236842e-05   p_joint 1.973684e-04

Joint ci ratio: 3.179224e-01	ci left: 1.660754e-04	ci right 2.299920e-04	k: 151	n:770000
Cons ci ratio: 9.239415e-01	ci left: 1.286125e-05	ci right 3.534866e-05	k: 17	n:770000
KS ci ratio: 1.389780e-02	ci left: 9.299432e-02	ci right 9.429705e-02	k: 72106	n:770000
DOCK3   770000 perm   499 sec   (1544 perm/sec)   p_kst 9.364416e-02   p_cons 2.207792e-05   p_joint 1.961039e-04

Joint ci ratio: 3.179228e-01	ci left: 1.639462e-04	ci right 2.270434e-04	k: 151	n:780000
Cons ci ratio: 9.239416e-01	ci left: 1.269637e-05	ci right 3.489547e-05	k: 17	n:780000
KS ci ratio: 1.381077e-02	ci left: 9.296981e-02	ci right 9.426398e-02	k: 73020	n:780000
DOCK3   780000 perm   508 sec   (1535 perm/sec)   p_kst 9.361538e-02   p_cons 2.179487e-05   p_joint 1.935897e-04

Joint ci ratio: 3.168823e-01	ci left: 1.630359e-04	ci right 2.255358e-04	k: 152	n:790000
Cons ci ratio: 9.239417e-01	ci left: 1.253565e-05	ci right 3.445376e-05	k: 17	n:790000
KS ci ratio: 1.372392e-02	ci left: 9.296361e-02	ci right 9.424949e-02	k: 73948	n:790000
DOCK3   790000 perm   518 sec   (1525 perm/sec)   p_kst 9.360506e-02   p_cons 2.151899e-05   p_joint 1.924051e-04

Joint ci ratio: 3.168827e-01	ci left: 1.609980e-04	ci right 2.227167e-04	k: 152	n:800000
Cons ci ratio: 9.239419e-01	ci left: 1.237896e-05	ci right 3.402309e-05	k: 17	n:800000
KS ci ratio: 1.363386e-02	ci left: 9.301741e-02	ci right 9.429553e-02	k: 74924	n:800000
DOCK3   800000 perm   528 sec   (1515 perm/sec)   p_kst 9.365500e-02   p_cons 2.125000e-05   p_joint 1.900000e-04

Joint ci ratio: 3.148317e-01	ci left: 1.612838e-04	ci right 2.226313e-04	k: 154	n:810000
Cons ci ratio: 9.239420e-01	ci left: 1.222613e-05	ci right 3.360306e-05	k: 17	n:810000
KS ci ratio: 1.355334e-02	ci left: 9.297268e-02	ci right 9.424258e-02	k: 75821	n:810000
DOCK3   810000 perm   538 sec   (1506 perm/sec)   p_kst 9.360617e-02   p_cons 2.098765e-05   p_joint 1.901235e-04

Joint ci ratio: 3.108459e-01	ci left: 1.638120e-04	ci right 2.251760e-04	k: 158	n:820000
Cons ci ratio: 9.239422e-01	ci left: 1.207703e-05	ci right 3.319326e-05	k: 17	n:820000
KS ci ratio: 1.346745e-02	ci left: 9.301416e-02	ci right 9.427651e-02	k: 76788	n:820000
DOCK3   820000 perm   548 sec   (1496 perm/sec)   p_kst 9.364390e-02   p_cons 2.073171e-05   p_joint 1.926829e-04

Joint ci ratio: 3.079540e-01	ci left: 1.651723e-04	ci right 2.263572e-04	k: 161	n:830000
Cons ci ratio: 8.992988e-01	ci left: 1.285299e-05	ci right 3.427419e-05	k: 18	n:830000
KS ci ratio: 1.338745e-02	ci left: 9.300062e-02	ci right 9.425523e-02	k: 77710	n:830000
DOCK3   830000 perm   558 sec   (1487 perm/sec)   p_kst 9.362651e-02   p_cons 2.168675e-05   p_joint 1.939759e-04

Joint ci ratio: 3.051414e-01	ci left: 1.665027e-04	ci right 2.275077e-04	k: 164	n:840000
Cons ci ratio: 8.992990e-01	ci left: 1.269998e-05	ci right 3.386617e-05	k: 18	n:840000
KS ci ratio: 1.330765e-02	ci left: 9.300285e-02	ci right 9.424995e-02	k: 78645	n:840000
DOCK3   840000 perm   568 sec   (1478 perm/sec)   p_kst 9.362500e-02   p_cons 2.142857e-05   p_joint 1.952381e-04

Joint ci ratio: 3.015083e-01	ci left: 1.688917e-04	ci right 2.298940e-04	k: 168	n:850000
Cons ci ratio: 8.992991e-01	ci left: 1.255057e-05	ci right 3.346775e-05	k: 18	n:850000
KS ci ratio: 1.323053e-02	ci left: 9.298863e-02	ci right 9.422826e-02	k: 79566	n:850000
DOCK3   850000 perm   578 sec   (1469 perm/sec)   p_kst 9.360706e-02   p_cons 2.117647e-05   p_joint 1.976471e-04

Joint ci ratio: 3.006204e-01	ci left: 1.680028e-04	ci right 2.284712e-04	k: 169	n:860000
Cons ci ratio: 8.992992e-01	ci left: 1.240463e-05	ci right 3.307859e-05	k: 18	n:860000
KS ci ratio: 1.315276e-02	ci left: 9.300026e-02	ci right 9.423271e-02	k: 80509	n:860000
DOCK3   860000 perm   589 sec   (1461 perm/sec)   p_kst 9.361512e-02   p_cons 2.093023e-05   p_joint 1.965116e-04

Joint ci ratio: 2.988675e-01	ci left: 1.681977e-04	ci right 2.283163e-04	k: 171	n:870000
Cons ci ratio: 8.992993e-01	ci left: 1.226205e-05	ci right 3.269838e-05	k: 18	n:870000
KS ci ratio: 1.307892e-02	ci left: 9.297842e-02	ci right 9.420360e-02	k: 81423	n:870000
DOCK3   870000 perm   600 sec   (1451 perm/sec)   p_kst 9.358966e-02   p_cons 2.068966e-05   p_joint 1.965517e-04

Joint ci ratio: 2.971449e-01	ci left: 1.683892e-04	ci right 2.281639e-04	k: 173	n:880000
Cons ci ratio: 8.992995e-01	ci left: 1.212270e-05	ci right 3.232681e-05	k: 18	n:880000
KS ci ratio: 1.300735e-02	ci left: 9.294349e-02	ci right 9.416146e-02	k: 82325	n:880000
DOCK3   880000 perm   610 sec   (1442 perm/sec)   p_kst 9.355114e-02   p_cons 2.045455e-05   p_joint 1.965909e-04

Joint ci ratio: 2.971452e-01	ci left: 1.664972e-04	ci right 2.256003e-04	k: 173	n:890000
Cons ci ratio: 8.992996e-01	ci left: 1.198649e-05	ci right 3.196359e-05	k: 18	n:890000
KS ci ratio: 1.293283e-02	ci left: 9.296314e-02	ci right 9.417434e-02	k: 83275	n:890000
DOCK3   890000 perm   621 sec   (1434 perm/sec)   p_kst 9.356742e-02   p_cons 2.022472e-05   p_joint 1.943820e-04

Joint ci ratio: 2.997412e-01	ci left: 1.615634e-04	ci right 2.195116e-04	k: 170	n:900000
Cons ci ratio: 8.992997e-01	ci left: 1.185331e-05	ci right 3.160844e-05	k: 18	n:900000
KS ci ratio: 1.286353e-02	ci left: 9.293030e-02	ci right 9.413454e-02	k: 84178	n:900000
DOCK3   900000 perm   631 sec   (1425 perm/sec)   p_kst 9.353111e-02   p_cons 2.000000e-05   p_joint 1.888889e-04

Joint ci ratio: 3.158557e-01	ci left: 1.425481e-04	ci right 1.969811e-04	k: 153	n:910000
Cons ci ratio: 8.992998e-01	ci left: 1.172305e-05	ci right 3.126110e-05	k: 18	n:910000
KS ci ratio: 1.279592e-02	ci left: 9.289053e-02	ci right 9.408788e-02	k: 85074	n:910000
DOCK3   910000 perm   642 sec   (1417 perm/sec)   p_kst 9.348791e-02   p_cons 1.978022e-05   p_joint 1.681319e-04

Joint ci ratio: 3.148353e-01	ci left: 1.419996e-04	ci right 1.960127e-04	k: 154	n:920000
Cons ci ratio: 8.992999e-01	ci left: 1.159563e-05	ci right 3.092130e-05	k: 18	n:920000
KS ci ratio: 1.272977e-02	ci left: 9.284623e-02	ci right 9.403677e-02	k: 85965	n:920000
DOCK3   920000 perm   653 sec   (1409 perm/sec)   p_kst 9.344022e-02   p_cons 1.956522e-05   p_joint 1.673913e-04

Joint ci ratio: 3.128235e-01	ci left: 1.424539e-04	ci right 1.962244e-04	k: 156	n:930000
Cons ci ratio: 8.765288e-01	ci left: 1.230030e-05	ci right 3.190396e-05	k: 19	n:930000
KS ci ratio: 1.266013e-02	ci left: 9.286293e-02	ci right 9.404713e-02	k: 86912	n:930000
DOCK3   930000 perm   664 sec   (1400 perm/sec)   p_kst 9.345376e-02   p_cons 2.043011e-05   p_joint 1.677419e-04

Joint ci ratio: 3.128238e-01	ci left: 1.409384e-04	ci right 1.941369e-04	k: 156	n:940000
Cons ci ratio: 8.765289e-01	ci left: 1.216945e-05	ci right 3.156456e-05	k: 19	n:940000
KS ci ratio: 1.259732e-02	ci left: 9.280292e-02	ci right 9.398044e-02	k: 87787	n:940000
DOCK3   940000 perm   675 sec   (1392 perm/sec)   p_kst 9.339043e-02   p_cons 2.021277e-05   p_joint 1.659574e-04

Joint ci ratio: 3.118324e-01	ci left: 1.404250e-04	ci right 1.932283e-04	k: 157	n:950000
Cons ci ratio: 8.765290e-01	ci left: 1.204135e-05	ci right 3.123230e-05	k: 19	n:950000
KS ci ratio: 1.252656e-02	ci left: 9.286385e-02	ci right 9.403547e-02	k: 88776	n:950000
DOCK3   950000 perm   686 sec   (1385 perm/sec)   p_kst 9.344842e-02   p_cons 2.000000e-05   p_joint 1.652632e-04

Joint ci ratio: 3.108503e-01	ci left: 1.399225e-04	ci right 1.923383e-04	k: 158	n:960000
Cons ci ratio: 8.765291e-01	ci left: 1.191592e-05	ci right 3.090697e-05	k: 19	n:960000
KS ci ratio: 1.246103e-02	ci left: 9.286847e-02	ci right 9.403398e-02	k: 89712	n:960000
DOCK3   960000 perm   697 sec   (1377 perm/sec)   p_kst 9.345000e-02   p_cons 1.979167e-05   p_joint 1.645833e-04

Joint ci ratio: 3.098775e-01	ci left: 1.394306e-04	ci right 1.914664e-04	k: 159	n:970000
Cons ci ratio: 8.554044e-01	ci left: 1.259439e-05	ci right 3.184351e-05	k: 20	n:970000
KS ci ratio: 1.239689e-02	ci left: 9.286788e-02	ci right 9.402734e-02	k: 90643	n:970000
DOCK3   970000 perm   709 sec   (1368 perm/sec)   p_kst 9.344639e-02   p_cons 2.061856e-05   p_joint 1.639175e-04

Joint ci ratio: 3.089137e-01	ci left: 1.389491e-04	ci right 1.906120e-04	k: 160	n:980000
Cons ci ratio: 8.554045e-01	ci left: 1.246588e-05	ci right 3.151858e-05	k: 20	n:980000
KS ci ratio: 1.232980e-02	ci left: 9.292124e-02	ci right 9.407504e-02	k: 91627	n:980000
DOCK3   980000 perm   720 sec   (1361 perm/sec)   p_kst 9.349694e-02   p_cons 2.040816e-05   p_joint 1.632653e-04

Joint ci ratio: 3.336691e-01	ci left: 1.161836e-04	ci right 1.635903e-04	k: 137	n:990000
Cons ci ratio: 8.554046e-01	ci left: 1.233996e-05	ci right 3.120021e-05	k: 20	n:990000
KS ci ratio: 1.226343e-02	ci left: 9.297858e-02	ci right 9.412683e-02	k: 92616	n:990000
DOCK3   990000 perm   732 sec   (1353 perm/sec)   p_kst 9.355152e-02   p_cons 2.020202e-05   p_joint 1.383838e-04

Joint ci ratio: 3.324668e-01	ci left: 1.159381e-04	ci right 1.630377e-04	k: 138	n:1000000
Cons ci ratio: 8.554047e-01	ci left: 1.221656e-05	ci right 3.088821e-05	k: 20	n:1000000
KS ci ratio: 1.220422e-02	ci left: 9.295002e-02	ci right 9.409234e-02	k: 93520	n:1000000
DOCK3   1000000 perm   743 sec   (1345 perm/sec)   p_kst 9.352000e-02   p_cons 2.000000e-05   p_joint 1.380000e-04

Joint ci ratio: 3.324670e-01	ci left: 1.147902e-04	ci right 1.614235e-04	k: 138	n:1010000
Cons ci ratio: 8.554048e-01	ci left: 1.209560e-05	ci right 3.058239e-05	k: 20	n:1010000
KS ci ratio: 1.214282e-02	ci left: 9.296449e-02	ci right 9.410121e-02	k: 94467	n:1010000
DOCK3   1010000 perm   755 sec   (1338 perm/sec)   p_kst 9.353168e-02   p_cons 1.980198e-05   p_joint 1.366337e-04

Joint ci ratio: 3.301006e-01	ci left: 1.154625e-04	ci right 1.619642e-04	k: 140	n:1020000
Cons ci ratio: 8.357374e-01	ci left: 1.274449e-05	ci right 3.147113e-05	k: 21	n:1020000
KS ci ratio: 1.207912e-02	ci left: 9.302367e-02	ci right 9.415511e-02	k: 95460	n:1020000
DOCK3   1020000 perm   767 sec   (1331 perm/sec)   p_kst 9.358824e-02   p_cons 2.058824e-05   p_joint 1.372549e-04

Joint ci ratio: 3.289363e-01	ci left: 1.152321e-04	ci right 1.614426e-04	k: 141	n:1030000
Cons ci ratio: 8.357375e-01	ci left: 1.262075e-05	ci right 3.116559e-05	k: 21	n:1030000
KS ci ratio: 1.202123e-02	ci left: 9.301395e-02	ci right 9.413980e-02	k: 96383	n:1030000
DOCK3   1030000 perm   779 sec   (1323 perm/sec)   p_kst 9.357573e-02   p_cons 2.038835e-05   p_joint 1.368932e-04

Joint ci ratio: 3.255154e-01	ci left: 1.167718e-04	ci right 1.630110e-04	k: 144	n:1040000
Cons ci ratio: 8.357376e-01	ci left: 1.249940e-05	ci right 3.086592e-05	k: 21	n:1040000
KS ci ratio: 1.196294e-02	ci left: 9.302168e-02	ci right 9.414213e-02	k: 97324	n:1040000
DOCK3   1040000 perm   791 sec   (1315 perm/sec)   p_kst 9.358077e-02   p_cons 2.019231e-05   p_joint 1.384615e-04

Joint ci ratio: 3.221992e-01	ci left: 1.182846e-04	ci right 1.645471e-04	k: 147	n:1050000
Cons ci ratio: 8.173672e-01	ci left: 1.313079e-05	ci right 3.172199e-05	k: 22	n:1050000
KS ci ratio: 1.190516e-02	ci left: 9.303402e-02	ci right 9.414917e-02	k: 98270	n:1050000
DOCK3   1050000 perm   803 sec   (1308 perm/sec)   p_kst 9.359048e-02   p_cons 2.095238e-05   p_joint 1.400000e-04

Joint ci ratio: 3.200439e-01	ci left: 1.189035e-04	ci right 1.650331e-04	k: 149	n:1060000
Cons ci ratio: 8.173672e-01	ci left: 1.300691e-05	ci right 3.142272e-05	k: 22	n:1060000
KS ci ratio: 1.185150e-02	ci left: 9.299911e-02	ci right 9.410878e-02	k: 99166	n:1060000
DOCK3   1060000 perm   815 sec   (1300 perm/sec)   p_kst 9.355283e-02   p_cons 2.075472e-05   p_joint 1.405660e-04

Joint ci ratio: 3.200441e-01	ci left: 1.177922e-04	ci right 1.634908e-04	k: 149	n:1070000
Cons ci ratio: 8.173673e-01	ci left: 1.288535e-05	ci right 3.112905e-05	k: 22	n:1070000
KS ci ratio: 1.179596e-02	ci left: 9.300214e-02	ci right 9.410661e-02	k: 100102	n:1070000
DOCK3   1070000 perm   828 sec   (1292 perm/sec)   p_kst 9.355327e-02   p_cons 2.056075e-05   p_joint 1.392523e-04

Joint ci ratio: 3.189826e-01	ci left: 1.175532e-04	ci right 1.629769e-04	k: 150	n:1080000
Cons ci ratio: 8.173674e-01	ci left: 1.276605e-05	ci right 3.084082e-05	k: 22	n:1080000
KS ci ratio: 1.174280e-02	ci left: 9.298203e-02	ci right 9.408126e-02	k: 101013	n:1080000
DOCK3   1080000 perm   840 sec   (1285 perm/sec)   p_kst 9.353056e-02   p_cons 2.037037e-05   p_joint 1.388889e-04

Joint ci ratio: 3.478233e-01	ci left: 9.629572e-05	ci right 1.376306e-04	k: 126	n:1090000
Cons ci ratio: 8.173675e-01	ci left: 1.264893e-05	ci right 3.055788e-05	k: 22	n:1090000
KS ci ratio: 1.188223e-02	ci left: 9.024568e-02	ci right 9.132530e-02	k: 98955	n:1090000
DOCK3   1090000 perm   853 sec   (1279 perm/sec)   p_kst 9.078440e-02   p_cons 2.018349e-05   p_joint 1.155963e-04

Joint ci ratio: 3.464620e-01	ci left: 9.625013e-05	ci right 1.373675e-04	k: 127	n:1100000
Cons ci ratio: 8.173676e-01	ci left: 1.253393e-05	ci right 3.028008e-05	k: 22	n:1100000
KS ci ratio: 1.182718e-02	ci left: 9.026096e-02	ci right 9.133574e-02	k: 99877	n:1100000
DOCK3   1100000 perm   865 sec   (1272 perm/sec)   p_kst 9.079727e-02   p_cons 2.000000e-05   p_joint 1.154545e-04

Joint ci ratio: 3.451165e-01	ci left: 9.620568e-05	ci right 1.371088e-04	k: 128	n:1110000
Cons ci ratio: 8.001576e-01	ci left: 1.313520e-05	ci right 3.109109e-05	k: 23	n:1110000
KS ci ratio: 1.177243e-02	ci left: 9.028228e-02	ci right 9.135229e-02	k: 100806	n:1110000
DOCK3   1110000 perm   878 sec   (1264 perm/sec)   p_kst 9.081622e-02   p_cons 2.072072e-05   p_joint 1.153153e-04

Joint ci ratio: 3.424718e-01	ci left: 9.697826e-05	ci right 1.378239e-04	k: 130	n:1120000
Cons ci ratio: 8.001577e-01	ci left: 1.301792e-05	ci right 3.081350e-05	k: 23	n:1120000
KS ci ratio: 1.172116e-02	ci left: 9.026493e-02	ci right 9.133005e-02	k: 101692	n:1120000
DOCK3   1120000 perm   891 sec   (1258 perm/sec)   p_kst 9.079643e-02   p_cons 2.053571e-05   p_joint 1.160714e-04

Joint ci ratio: 3.411721e-01	ci left: 9.692904e-05	ci right 1.375649e-04	k: 131	n:1130000
Cons ci ratio: 8.001578e-01	ci left: 1.290272e-05	ci right 3.054081e-05	k: 23	n:1130000
KS ci ratio: 1.166612e-02	ci left: 9.031056e-02	ci right 9.137118e-02	k: 102649	n:1130000
DOCK3   1130000 perm   904 sec   (1250 perm/sec)   p_kst 9.083982e-02   p_cons 2.035398e-05   p_joint 1.159292e-04

Joint ci ratio: 3.411723e-01	ci left: 9.607877e-05	ci right 1.363582e-04	k: 131	n:1140000
Cons ci ratio: 8.001579e-01	ci left: 1.278954e-05	ci right 3.027291e-05	k: 23	n:1140000
KS ci ratio: 1.161456e-02	ci left: 9.031691e-02	ci right 9.137289e-02	k: 103562	n:1140000
DOCK3   1140000 perm   917 sec   (1243 perm/sec)   p_kst 9.084386e-02   p_cons 2.017544e-05   p_joint 1.149123e-04

Joint ci ratio: 3.398873e-01	ci left: 9.603852e-05	ci right 1.361161e-04	k: 132	n:1150000
Cons ci ratio: 8.001580e-01	ci left: 1.267833e-05	ci right 3.000967e-05	k: 23	n:1150000
KS ci ratio: 1.156458e-02	ci left: 9.031015e-02	ci right 9.136147e-02	k: 104460	n:1150000
DOCK3   1150000 perm   930 sec   (1237 perm/sec)   p_kst 9.083478e-02   p_cons 2.000000e-05   p_joint 1.147826e-04

Joint ci ratio: 3.373601e-01	ci left: 9.678815e-05	ci right 1.368128e-04	k: 134	n:1160000
Cons ci ratio: 8.001580e-01	ci left: 1.256903e-05	ci right 2.975097e-05	k: 23	n:1160000
KS ci ratio: 1.151213e-02	ci left: 9.034823e-02	ci right 9.139519e-02	k: 105410	n:1160000
DOCK3   1160000 perm   943 sec   (1230 perm/sec)   p_kst 9.087069e-02   p_cons 1.982759e-05   p_joint 1.155172e-04

Joint ci ratio: 3.373603e-01	ci left: 9.596090e-05	ci right 1.356435e-04	k: 134	n:1170000
Cons ci ratio: 8.001581e-01	ci left: 1.246160e-05	ci right 2.949669e-05	k: 23	n:1170000
KS ci ratio: 1.146186e-02	ci left: 9.036435e-02	ci right 9.140690e-02	k: 106335	n:1170000
DOCK3   1170000 perm   956 sec   (1224 perm/sec)   p_kst 9.088462e-02   p_cons 1.965812e-05   p_joint 1.145299e-04

Joint ci ratio: 3.336729e-01	ci left: 9.747590e-05	ci right 1.372497e-04	k: 137	n:1180000
Cons ci ratio: 7.839914e-01	ci left: 1.303161e-05	ci right 3.026264e-05	k: 24	n:1180000
KS ci ratio: 1.141429e-02	ci left: 9.035063e-02	ci right 9.138867e-02	k: 107225	n:1180000
DOCK3   1180000 perm   969 sec   (1217 perm/sec)   p_kst 9.086864e-02   p_cons 2.033898e-05   p_joint 1.161017e-04

Joint ci ratio: 3.324705e-01	ci left: 9.742684e-05	ci right 1.370067e-04	k: 138	n:1190000
Cons ci ratio: 7.687665e-01	ci left: 1.359558e-05	ci right 3.101239e-05	k: 25	n:1190000
KS ci ratio: 1.137015e-02	ci left: 9.029608e-02	ci right 9.132945e-02	k: 108066	n:1190000
DOCK3   1190000 perm   983 sec   (1211 perm/sec)   p_kst 9.081176e-02   p_cons 2.100840e-05   p_joint 1.159664e-04

Joint ci ratio: 3.312810e-01	ci left: 9.737885e-05	ci right 1.367675e-04	k: 139	n:1200000
Cons ci ratio: 7.687666e-01	ci left: 1.348228e-05	ci right 3.075396e-05	k: 25	n:1200000
KS ci ratio: 1.132131e-02	ci left: 9.031808e-02	ci right 9.134723e-02	k: 108998	n:1200000
DOCK3   1200000 perm   996 sec   (1205 perm/sec)   p_kst 9.083167e-02   p_cons 2.083333e-05   p_joint 1.158333e-04

Joint ci ratio: 3.289397e-01	ci left: 9.808999e-05	ci right 1.374266e-04	k: 141	n:1210000
Cons ci ratio: 7.687667e-01	ci left: 1.337085e-05	ci right 3.049979e-05	k: 25	n:1210000
KS ci ratio: 1.127473e-02	ci left: 9.031582e-02	ci right 9.134069e-02	k: 109901	n:1210000
DOCK3   1210000 perm   1009 sec   (1199 perm/sec)   p_kst 9.082727e-02   p_cons 2.066116e-05   p_joint 1.165289e-04

Joint ci ratio: 3.289398e-01	ci left: 9.728597e-05	ci right 1.363002e-04	k: 141	n:1220000
Cons ci ratio: 7.687667e-01	ci left: 1.326126e-05	ci right 3.024980e-05	k: 25	n:1220000
KS ci ratio: 1.122633e-02	ci left: 9.034876e-02	ci right 9.136957e-02	k: 110847	n:1220000
DOCK3   1220000 perm   1023 sec   (1193 perm/sec)   p_kst 9.085820e-02   p_cons 2.049180e-05   p_joint 1.155738e-04

Joint ci ratio: 3.277877e-01	ci left: 9.724102e-05	ci right 1.360718e-04	k: 142	n:1230000
Cons ci ratio: 7.687668e-01	ci left: 1.315344e-05	ci right 3.000386e-05	k: 25	n:1230000
KS ci ratio: 1.117931e-02	ci left: 9.036983e-02	ci right 9.138657e-02	k: 111779	n:1230000
DOCK3   1230000 perm   1036 sec   (1187 perm/sec)   p_kst 9.087724e-02   p_cons 2.032520e-05   p_joint 1.154472e-04

Joint ci ratio: 3.324713e-01	ci left: 9.349830e-05	ci right 1.314823e-04	k: 138	n:1240000
Cons ci ratio: 7.543958e-01	ci left: 1.369687e-05	ci right 3.072245e-05	k: 26	n:1240000
KS ci ratio: 1.113483e-02	ci left: 9.036160e-02	ci right 9.137418e-02	k: 112675	n:1240000
DOCK3   1240000 perm   1050 sec   (1181 perm/sec)   p_kst 9.086694e-02   p_cons 2.096774e-05   p_joint 1.112903e-04

Joint ci ratio: 3.312818e-01	ci left: 9.348366e-05	ci right 1.312969e-04	k: 139	n:1250000
Cons ci ratio: 7.543959e-01	ci left: 1.358729e-05	ci right 3.047667e-05	k: 26	n:1250000
KS ci ratio: 1.108681e-02	ci left: 9.041416e-02	ci right 9.142293e-02	k: 113647	n:1250000
DOCK3   1250000 perm   1063 sec   (1175 perm/sec)   p_kst 9.091760e-02   p_cons 2.080000e-05   p_joint 1.112000e-04

Joint ci ratio: 3.289404e-01	ci left: 9.419750e-05	ci right 1.319732e-04	k: 141	n:1260000
Cons ci ratio: 7.543960e-01	ci left: 1.347946e-05	ci right 3.023479e-05	k: 26	n:1260000
KS ci ratio: 1.104210e-02	ci left: 9.042552e-02	ci right 9.143033e-02	k: 114568	n:1260000
DOCK3   1260000 perm   1077 sec   (1170 perm/sec)   p_kst 9.092698e-02   p_cons 2.063492e-05   p_joint 1.119048e-04

Joint ci ratio: 3.244027e-01	ci left: 9.634716e-05	ci right 1.343410e-04	k: 145	n:1270000
Cons ci ratio: 7.408019e-01	ci left: 1.401042e-05	ci right 3.093181e-05	k: 27	n:1270000
KS ci ratio: 1.099682e-02	ci left: 9.045321e-02	ci right 9.145417e-02	k: 115510	n:1270000
DOCK3   1270000 perm   1091 sec   (1164 perm/sec)   p_kst 9.095276e-02   p_cons 2.125984e-05   p_joint 1.141732e-04

Joint ci ratio: 3.222033e-01	ci left: 9.703016e-05	ci right 1.349803e-04	k: 147	n:1280000
Cons ci ratio: 7.279172e-01	ci left: 1.453583e-05	ci right 3.161531e-05	k: 28	n:1280000
KS ci ratio: 1.095298e-02	ci left: 9.046722e-02	ci right 9.146432e-02	k: 116435	n:1280000
DOCK3   1280000 perm   1105 sec   (1158 perm/sec)   p_kst 9.096484e-02   p_cons 2.187500e-05   p_joint 1.148437e-04

Joint ci ratio: 3.222034e-01	ci left: 9.627799e-05	ci right 1.339340e-04	k: 147	n:1290000
Cons ci ratio: 7.279173e-01	ci left: 1.442315e-05	ci right 3.137023e-05	k: 28	n:1290000
KS ci ratio: 1.091115e-02	ci left: 9.045859e-02	ci right 9.145177e-02	k: 117331	n:1290000
DOCK3   1290000 perm   1120 sec   (1152 perm/sec)   p_kst 9.095426e-02   p_cons 2.170543e-05   p_joint 1.139535e-04

Joint ci ratio: 3.222035e-01	ci left: 9.553738e-05	ci right 1.329037e-04	k: 147	n:1300000
Cons ci ratio: 7.279173e-01	ci left: 1.431220e-05	ci right 3.112892e-05	k: 28	n:1300000
KS ci ratio: 1.087049e-02	ci left: 9.043937e-02	ci right 9.142861e-02	k: 118213	n:1300000
DOCK3   1300000 perm   1134 sec   (1147 perm/sec)   p_kst 9.093308e-02   p_cons 2.153846e-05   p_joint 1.130769e-04

Joint ci ratio: 3.211205e-01	ci left: 9.550982e-05	ci right 1.327140e-04	k: 148	n:1310000
Cons ci ratio: 7.279174e-01	ci left: 1.420294e-05	ci right 3.089130e-05	k: 28	n:1310000
KS ci ratio: 1.082914e-02	ci left: 9.043796e-02	ci right 9.142340e-02	k: 119118	n:1310000
DOCK3   1310000 perm   1148 sec   (1141 perm/sec)   p_kst 9.092977e-02   p_cons 2.137405e-05   p_joint 1.129771e-04

Joint ci ratio: 3.211207e-01	ci left: 9.478625e-05	ci right 1.317086e-04	k: 148	n:1320000
Cons ci ratio: 7.279175e-01	ci left: 1.409535e-05	ci right 3.065728e-05	k: 28	n:1320000
KS ci ratio: 1.078529e-02	ci left: 9.048192e-02	ci right 9.146382e-02	k: 120083	n:1320000
DOCK3   1320000 perm   1162 sec   (1136 perm/sec)   p_kst 9.097197e-02   p_cons 2.121212e-05   p_joint 1.121212e-04

Joint ci ratio: 3.200485e-01	ci left: 9.476496e-05	ci right 1.315305e-04	k: 149	n:1330000
Cons ci ratio: 7.279175e-01	ci left: 1.398936e-05	ci right 3.042677e-05	k: 28	n:1330000
KS ci ratio: 1.074392e-02	ci left: 9.049522e-02	ci right 9.147348e-02	k: 121008	n:1330000
DOCK3   1330000 perm   1177 sec   (1130 perm/sec)   p_kst 9.098346e-02   p_cons 2.105263e-05   p_joint 1.120301e-04

Joint ci ratio: 3.312830e-01	ci left: 8.720486e-05	ci right 1.224785e-04	k: 139	n:1340000
Cons ci ratio: 7.040444e-01	ci left: 1.510518e-05	ci right 3.196019e-05	k: 30	n:1340000
KS ci ratio: 1.070143e-02	ci left: 9.053290e-02	ci right 9.150767e-02	k: 121966	n:1340000
DOCK3   1340000 perm   1191 sec   (1125 perm/sec)   p_kst 9.101940e-02   p_cons 2.238806e-05   p_joint 1.037313e-04

Joint ci ratio: 3.312832e-01	ci left: 8.655889e-05	ci right 1.215713e-04	k: 139	n:1350000
Cons ci ratio: 7.040444e-01	ci left: 1.499329e-05	ci right 3.172345e-05	k: 30	n:1350000
KS ci ratio: 1.066207e-02	ci left: 9.052939e-02	ci right 9.150051e-02	k: 122869	n:1350000
DOCK3   1350000 perm   1206 sec   (1120 perm/sec)   p_kst 9.101407e-02   p_cons 2.222222e-05   p_joint 1.029630e-04

Joint ci ratio: 2.814194e-01	ci left: 1.225971e-04	ci right 1.634053e-04	k: 193	n:1360000
Cons ci ratio: 7.040445e-01	ci left: 1.488304e-05	ci right 3.149019e-05	k: 30	n:1360000
KS ci ratio: 1.035019e-02	ci left: 9.491484e-02	ci right 9.590306e-02	k: 129755	n:1360000
DOCK3   1360000 perm   1221 sec   (1114 perm/sec)   p_kst 9.540809e-02   p_cons 2.205882e-05   p_joint 1.419118e-04

Joint ci ratio: 2.499075e-01	ci left: 1.571400e-04	ci right 2.026813e-04	k: 245	n:1370000
Cons ci ratio: 7.040446e-01	ci left: 1.477441e-05	ci right 3.126034e-05	k: 30	n:1370000
KS ci ratio: 1.034537e-02	ci left: 9.436749e-02	ci right 9.534955e-02	k: 129955	n:1370000
DOCK3   1370000 perm   1235 sec   (1109 perm/sec)   p_kst 9.485766e-02   p_cons 2.189781e-05   p_joint 1.788321e-04

Joint ci ratio: 2.483974e-01	ci left: 1.580395e-04	ci right 2.035220e-04	k: 248	n:1380000
Cons ci ratio: 7.040446e-01	ci left: 1.466735e-05	ci right 3.103382e-05	k: 30	n:1380000
KS ci ratio: 1.030624e-02	ci left: 9.439560e-02	ci right 9.537421e-02	k: 130940	n:1380000
DOCK3   1380000 perm   1250 sec   (1104 perm/sec)   p_kst 9.488406e-02   p_cons 2.173913e-05   p_joint 1.797101e-04

Joint ci ratio: 2.474058e-01	ci left: 1.582520e-04	ci right 2.035859e-04	k: 250	n:1390000
Cons ci ratio: 7.040447e-01	ci left: 1.456183e-05	ci right 3.081055e-05	k: 30	n:1390000
KS ci ratio: 1.026862e-02	ci left: 9.440537e-02	ci right 9.538049e-02	k: 131900	n:1390000
DOCK3   1390000 perm   1265 sec   (1099 perm/sec)   p_kst 9.489209e-02   p_cons 2.158273e-05   p_joint 1.798561e-04

Joint ci ratio: 2.454575e-01	ci left: 1.598024e-04	ci right 2.051649e-04	k: 254	n:1400000
Cons ci ratio: 7.040447e-01	ci left: 1.445781e-05	ci right 3.059048e-05	k: 30	n:1400000
KS ci ratio: 1.023272e-02	ci left: 9.439292e-02	ci right 9.536448e-02	k: 132829	n:1400000
DOCK3   1400000 perm   1280 sec   (1094 perm/sec)   p_kst 9.487786e-02   p_cons 2.142857e-05   p_joint 1.814286e-04

Joint ci ratio: 2.445005e-01	ci left: 1.600004e-04	ci right 2.052151e-04	k: 256	n:1410000
Cons ci ratio: 6.929565e-01	ci left: 1.493834e-05	ci right 3.120697e-05	k: 31	n:1410000
KS ci ratio: 1.019826e-02	ci left: 9.436295e-02	ci right 9.533091e-02	k: 133733	n:1410000
DOCK3   1410000 perm   1295 sec   (1089 perm/sec)   p_kst 9.484610e-02   p_cons 2.198582e-05   p_joint 1.815603e-04

Joint ci ratio: 2.445007e-01	ci left: 1.588736e-04	ci right 2.037700e-04	k: 256	n:1420000
Cons ci ratio: 6.929566e-01	ci left: 1.483314e-05	ci right 3.098720e-05	k: 31	n:1420000
KS ci ratio: 1.016464e-02	ci left: 9.432498e-02	ci right 9.528935e-02	k: 134625	n:1420000
DOCK3   1420000 perm   1310 sec   (1084 perm/sec)   p_kst 9.480634e-02   p_cons 2.183099e-05   p_joint 1.802817e-04

Joint ci ratio: 2.464264e-01	ci left: 1.551374e-04	ci right 1.993762e-04	k: 252	n:1430000
Cons ci ratio: 6.823763e-01	ci left: 1.530633e-05	ci right 3.159038e-05	k: 32	n:1430000
KS ci ratio: 1.012859e-02	ci left: 9.433430e-02	ci right 9.529532e-02	k: 135584	n:1430000
DOCK3   1430000 perm   1325 sec   (1079 perm/sec)   p_kst 9.481399e-02   p_cons 2.237762e-05   p_joint 1.762238e-04

Joint ci ratio: 2.464266e-01	ci left: 1.540601e-04	ci right 1.979916e-04	k: 252	n:1440000
Cons ci ratio: 6.625927e-01	ci left: 1.635143e-05	ci right 3.299401e-05	k: 34	n:1440000
KS ci ratio: 1.009287e-02	ci left: 9.434418e-02	ci right 9.530189e-02	k: 136544	n:1440000
DOCK3   1440000 perm   1340 sec   (1074 perm/sec)   p_kst 9.482222e-02   p_cons 2.361111e-05   p_joint 1.750000e-04

Joint ci ratio: 2.464267e-01	ci left: 1.529976e-04	ci right 1.966262e-04	k: 252	n:1450000
Cons ci ratio: 6.625927e-01	ci left: 1.623867e-05	ci right 3.276646e-05	k: 34	n:1450000
KS ci ratio: 1.005846e-02	ci left: 9.433811e-02	ci right 9.529247e-02	k: 137481	n:1450000
DOCK3   1450000 perm   1355 sec   (1070 perm/sec)   p_kst 9.481448e-02   p_cons 2.344828e-05   p_joint 1.737931e-04

Joint ci ratio: 2.464268e-01	ci left: 1.519496e-04	ci right 1.952794e-04	k: 252	n:1460000
Cons ci ratio: 6.625928e-01	ci left: 1.612744e-05	ci right 3.254204e-05	k: 34	n:1460000
KS ci ratio: 1.002580e-02	ci left: 9.430821e-02	ci right 9.525915e-02	k: 138383	n:1460000
DOCK3   1460000 perm   1371 sec   (1065 perm/sec)   p_kst 9.478288e-02   p_cons 2.328767e-05   p_joint 1.726027e-04

Joint ci ratio: 2.459413e-01	ci left: 1.515543e-04	ci right 1.946732e-04	k: 253	n:1470000
Cons ci ratio: 6.533251e-01	ci left: 1.658426e-05	ci right 3.311313e-05	k: 35	n:1470000
KS ci ratio: 9.992549e-03	ci left: 9.429433e-02	ci right 9.524196e-02	k: 139308	n:1470000
DOCK3   1470000 perm   1387 sec   (1060 perm/sec)   p_kst 9.476735e-02   p_cons 2.380952e-05   p_joint 1.721088e-04

Joint ci ratio: 2.445016e-01	ci left: 1.524327e-04	ci right 1.955091e-04	k: 256	n:1480000
Cons ci ratio: 6.533252e-01	ci left: 1.647220e-05	ci right 3.288939e-05	k: 35	n:1480000
KS ci ratio: 9.957427e-03	ci left: 9.431840e-02	ci right 9.526292e-02	k: 140289	n:1480000
DOCK3   1480000 perm   1402 sec   (1055 perm/sec)   p_kst 9.478986e-02   p_cons 2.364865e-05   p_joint 1.729730e-04

Joint ci ratio: 1.977117e-01	ci left: 2.376877e-04	ci right 2.904612e-04	k: 392	n:1490000
Cons ci ratio: 6.444358e-01	ci left: 1.692217e-05	ci right 3.344896e-05	k: 36	n:1490000
KS ci ratio: 9.922556e-03	ci left: 9.434415e-02	ci right 9.528561e-02	k: 141273	n:1490000
DOCK3   1490000 perm   1418 sec   (1051 perm/sec)   p_kst 9.481409e-02   p_cons 2.416107e-05   p_joint 2.630872e-04

Joint ci ratio: 1.969613e-01	ci left: 2.380043e-04	ci right 2.906235e-04	k: 395	n:1500000
Cons ci ratio: 6.444359e-01	ci left: 1.680936e-05	ci right 3.322596e-05	k: 36	n:1500000
KS ci ratio: 9.888049e-03	ci left: 9.436957e-02	ci right 9.530799e-02	k: 142257	n:1500000
DOCK3   1500000 perm   1434 sec   (1046 perm/sec)   p_kst 9.483800e-02   p_cons 2.400000e-05   p_joint 2.633333e-04

Joint ci ratio: 1.969615e-01	ci left: 2.364281e-04	ci right 2.886988e-04	k: 395	n:1510000
Cons ci ratio: 6.444359e-01	ci left: 1.669804e-05	ci right 3.300592e-05	k: 36	n:1510000
KS ci ratio: 9.856180e-03	ci left: 9.435502e-02	ci right 9.529025e-02	k: 143181	n:1510000
DOCK3   1510000 perm   1450 sec   (1041 perm/sec)   p_kst 9.482185e-02   p_cons 2.384106e-05   p_joint 2.615894e-04

Joint ci ratio: 1.967134e-01	ci left: 2.354982e-04	ci right 2.874898e-04	k: 396	n:1520000
Cons ci ratio: 6.444360e-01	ci left: 1.658818e-05	ci right 3.278878e-05	k: 36	n:1520000
KS ci ratio: 9.822885e-03	ci left: 9.437085e-02	ci right 9.530306e-02	k: 144151	n:1520000
DOCK3   1520000 perm   1466 sec   (1037 perm/sec)   p_kst 9.483618e-02   p_cons 2.368421e-05   p_joint 2.605263e-04

Joint ci ratio: 1.962198e-01	ci left: 2.352018e-04	ci right 2.869822e-04	k: 398	n:1530000
Cons ci ratio: 6.444360e-01	ci left: 1.647976e-05	ci right 3.257448e-05	k: 36	n:1530000
KS ci ratio: 9.792721e-03	ci left: 9.433757e-02	ci right 9.526658e-02	k: 145046	n:1530000
DOCK3   1530000 perm   1482 sec   (1032 perm/sec)   p_kst 9.480131e-02   p_cons 2.352941e-05   p_joint 2.601307e-04

Joint ci ratio: 1.957299e-01	ci left: 2.349095e-04	ci right 2.864810e-04	k: 400	n:1540000
Cons ci ratio: 6.444361e-01	ci left: 1.637275e-05	ci right 3.236295e-05	k: 36	n:1540000
KS ci ratio: 9.761023e-03	ci left: 9.433648e-02	ci right 9.526245e-02	k: 145990	n:1540000
DOCK3   1540000 perm   1498 sec   (1028 perm/sec)   p_kst 9.479870e-02   p_cons 2.337662e-05   p_joint 2.597403e-04

Joint ci ratio: 1.950018e-01	ci left: 2.352348e-04	ci right 2.866628e-04	k: 403	n:1550000
Cons ci ratio: 6.444361e-01	ci left: 1.626712e-05	ci right 3.215416e-05	k: 36	n:1550000
KS ci ratio: 9.730253e-03	ci left: 9.432446e-02	ci right 9.524738e-02	k: 146917	n:1550000
DOCK3   1550000 perm   1514 sec   (1023 perm/sec)   p_kst 9.478516e-02   p_cons 2.322581e-05   p_joint 2.600000e-04

Joint ci ratio: 1.942818e-01	ci left: 2.355563e-04	ci right 2.868419e-04	k: 406	n:1560000
Cons ci ratio: 6.444362e-01	ci left: 1.616284e-05	ci right 3.194805e-05	k: 36	n:1560000
KS ci ratio: 9.700859e-03	ci left: 9.429341e-02	ci right 9.521322e-02	k: 147814	n:1560000
DOCK3   1560000 perm   1531 sec   (1019 perm/sec)   p_kst 9.475256e-02   p_cons 2.307692e-05   p_joint 2.602564e-04

Joint ci ratio: 1.940436e-01	ci left: 2.346619e-04	ci right 2.856827e-04	k: 407	n:1570000
Cons ci ratio: 6.444362e-01	ci left: 1.605990e-05	ci right 3.174456e-05	k: 36	n:1570000
KS ci ratio: 9.670868e-03	ci left: 9.427802e-02	ci right 9.519482e-02	k: 148735	n:1570000
DOCK3   1570000 perm   1547 sec   (1015 perm/sec)   p_kst 9.473567e-02   p_cons 2.292994e-05   p_joint 2.592357e-04

Joint ci ratio: 1.930993e-01	ci left: 2.355856e-04	ci right 2.865288e-04	k: 411	n:1580000
Cons ci ratio: 6.444363e-01	ci left: 1.595825e-05	ci right 3.154364e-05	k: 36	n:1580000
KS ci ratio: 9.639375e-03	ci left: 9.429440e-02	ci right 9.520835e-02	k: 149706	n:1580000
DOCK3   1580000 perm   1564 sec   (1010 perm/sec)   p_kst 9.475063e-02   p_cons 2.278481e-05   p_joint 2.601266e-04

Joint ci ratio: 1.938065e-01	ci left: 2.323085e-04	ci right 2.827487e-04	k: 408	n:1590000
Cons ci ratio: 6.444363e-01	ci left: 1.585788e-05	ci right 3.134526e-05	k: 36	n:1590000
KS ci ratio: 9.608786e-03	ci left: 9.429991e-02	ci right 9.521100e-02	k: 150660	n:1590000
DOCK3   1590000 perm   1581 sec   (1006 perm/sec)   p_kst 9.475472e-02   p_cons 2.264151e-05   p_joint 2.566038e-04

Joint ci ratio: 1.930996e-01	ci left: 2.326408e-04	ci right 2.829472e-04	k: 411	n:1600000
Cons ci ratio: 6.444364e-01	ci left: 1.575877e-05	ci right 3.114935e-05	k: 36	n:1600000
KS ci ratio: 9.579359e-03	ci left: 9.428976e-02	ci right 9.519795e-02	k: 151589	n:1600000
DOCK3   1600000 perm   1597 sec   (1002 perm/sec)   p_kst 9.474312e-02   p_cons 2.250000e-05   p_joint 2.568750e-04

Joint ci ratio: 1.926327e-01	ci left: 2.323781e-04	ci right 2.824919e-04	k: 413	n:1610000
Cons ci ratio: 6.444364e-01	ci left: 1.566089e-05	ci right 3.095588e-05	k: 36	n:1610000
KS ci ratio: 9.550028e-03	ci left: 9.428285e-02	ci right 9.518818e-02	k: 152523	n:1610000
DOCK3   1610000 perm   1614 sec   (998 perm/sec)   p_kst 9.473478e-02   p_cons 2.236025e-05   p_joint 2.565217e-04

Joint ci ratio: 1.910242e-01	ci left: 2.350571e-04	ci right 2.852764e-04	k: 420	n:1620000
Cons ci ratio: 6.444365e-01	ci left: 1.556422e-05	ci right 3.076479e-05	k: 36	n:1620000
KS ci ratio: 9.519354e-03	ci left: 9.430497e-02	ci right 9.520759e-02	k: 153504	n:1620000
DOCK3   1620000 perm   1631 sec   (993 perm/sec)   p_kst 9.475556e-02   p_cons 2.222222e-05   p_joint 2.592593e-04

Joint ci ratio: 1.905721e-01	ci left: 2.347835e-04	ci right 2.848117e-04	k: 422	n:1630000
Cons ci ratio: 6.359004e-01	ci left: 1.598251e-05	ci right 3.128798e-05	k: 37	n:1630000
KS ci ratio: 9.492572e-03	ci left: 9.426194e-02	ci right 9.516159e-02	k: 154379	n:1630000
DOCK3   1630000 perm   1648 sec   (989 perm/sec)   p_kst 9.471104e-02   p_cons 2.269939e-05   p_joint 2.588957e-04

Joint ci ratio: 1.959760e-01	ci left: 2.200057e-04	ci right 2.683733e-04	k: 399	n:1640000
Cons ci ratio: 6.276947e-01	ci left: 1.639704e-05	ci right 3.180350e-05	k: 38	n:1640000
KS ci ratio: 9.463221e-03	ci left: 9.426993e-02	ci right 9.516686e-02	k: 155337	n:1640000
DOCK3   1640000 perm   1665 sec   (985 perm/sec)   p_kst 9.471768e-02   p_cons 2.317073e-05   p_joint 2.432927e-04

Joint ci ratio: 1.954880e-01	ci left: 2.198251e-04	ci right 2.680182e-04	k: 401	n:1650000
Cons ci ratio: 6.197987e-01	ci left: 1.680782e-05	ci right 3.231155e-05	k: 39	n:1650000
KS ci ratio: 9.434174e-03	ci left: 9.427723e-02	ci right 9.517146e-02	k: 156294	n:1650000
DOCK3   1650000 perm   1682 sec   (981 perm/sec)   p_kst 9.472364e-02   p_cons 2.363636e-05   p_joint 2.430303e-04

Joint ci ratio: 1.950035e-01	ci left: 2.196468e-04	ci right 2.676673e-04	k: 403	n:1660000
Cons ci ratio: 6.197988e-01	ci left: 1.670657e-05	ci right 3.211690e-05	k: 39	n:1660000
KS ci ratio: 9.405260e-03	ci left: 9.428685e-02	ci right 9.517842e-02	k: 157255	n:1660000
DOCK3   1660000 perm   1699 sec   (977 perm/sec)   p_kst 9.473193e-02   p_cons 2.349398e-05   p_joint 2.427711e-04

Joint ci ratio: 2.045998e-01	ci left: 1.972833e-04	ci right 2.428028e-04	k: 366	n:1670000
Cons ci ratio: 6.197988e-01	ci left: 1.660653e-05	ci right 3.192458e-05	k: 39	n:1670000
KS ci ratio: 9.377527e-03	ci left: 9.427963e-02	ci right 9.516848e-02	k: 158188	n:1670000
DOCK3   1670000 perm   1717 sec   (973 perm/sec)   p_kst 9.472335e-02   p_cons 2.335329e-05   p_joint 2.191617e-04

Joint ci ratio: 2.040446e-01	ci left: 1.972386e-04	ci right 2.426089e-04	k: 368	n:1680000
Cons ci ratio: 6.197989e-01	ci left: 1.650768e-05	ci right 3.173456e-05	k: 39	n:1680000
KS ci ratio: 9.349682e-03	ci left: 9.427903e-02	ci right 9.516523e-02	k: 159132	n:1680000
DOCK3   1680000 perm   1734 sec   (969 perm/sec)   p_kst 9.472143e-02   p_cons 2.321429e-05   p_joint 2.190476e-04

Joint ci ratio: 2.034939e-01	ci left: 1.971945e-04	ci right 2.424170e-04	k: 370	n:1690000
Cons ci ratio: 6.197989e-01	ci left: 1.641000e-05	ci right 3.154678e-05	k: 39	n:1690000
KS ci ratio: 9.322018e-03	ci left: 9.427962e-02	ci right 9.516319e-02	k: 160078	n:1690000
DOCK3   1690000 perm   1752 sec   (965 perm/sec)   p_kst 9.472071e-02   p_cons 2.307692e-05   p_joint 2.189349e-04

Joint ci ratio: 2.029476e-01	ci left: 1.971512e-04	ci right 2.422273e-04	k: 372	n:1700000
Cons ci ratio: 6.197989e-01	ci left: 1.631347e-05	ci right 3.136121e-05	k: 39	n:1700000
KS ci ratio: 9.293164e-03	ci left: 9.430663e-02	ci right 9.518770e-02	k: 161069	n:1700000
DOCK3   1700000 perm   1769 sec   (961 perm/sec)   p_kst 9.474647e-02   p_cons 2.294118e-05   p_joint 2.188235e-04

Joint ci ratio: 2.024057e-01	ci left: 1.971085e-04	ci right 2.420397e-04	k: 374	n:1710000
Cons ci ratio: 6.197990e-01	ci left: 1.621807e-05	ci right 3.117781e-05	k: 39	n:1710000
KS ci ratio: 9.265082e-03	ci left: 9.432398e-02	ci right 9.520254e-02	k: 162044	n:1710000
DOCK3   1710000 perm   1787 sec   (957 perm/sec)   p_kst 9.476257e-02   p_cons 2.280702e-05   p_joint 2.187135e-04

Joint ci ratio: 2.021364e-01	ci left: 1.965144e-04	ci right 2.412433e-04	k: 375	n:1720000
Cons ci ratio: 6.197990e-01	ci left: 1.612378e-05	ci right 3.099655e-05	k: 39	n:1720000
KS ci ratio: 9.238129e-03	ci left: 9.432489e-02	ci right 9.520089e-02	k: 162991	n:1720000
DOCK3   1720000 perm   1804 sec   (953 perm/sec)   p_kst 9.476221e-02   p_cons 2.267442e-05   p_joint 2.180233e-04

Joint ci ratio: 2.018682e-01	ci left: 1.959273e-04	ci right 2.404560e-04	k: 376	n:1730000
Cons ci ratio: 6.197991e-01	ci left: 1.603058e-05	ci right 3.081738e-05	k: 39	n:1730000
KS ci ratio: 9.211938e-03	ci left: 9.431599e-02	ci right 9.518941e-02	k: 163921	n:1730000
DOCK3   1730000 perm   1822 sec   (949 perm/sec)   p_kst 9.475202e-02   p_cons 2.254335e-05   p_joint 2.173410e-04

Joint ci ratio: 2.013349e-01	ci left: 1.958927e-04	ci right 2.402815e-04	k: 378	n:1740000
Cons ci ratio: 6.121938e-01	ci left: 1.642337e-05	ci right 3.130369e-05	k: 40	n:1740000
KS ci ratio: 9.184460e-03	ci left: 9.433530e-02	ci right 9.520628e-02	k: 164900	n:1740000
DOCK3   1740000 perm   1840 sec   (946 perm/sec)   p_kst 9.477011e-02   p_cons 2.298851e-05   p_joint 2.172414e-04

Joint ci ratio: 2.002807e-01	ci left: 1.969441e-04	ci right 2.413089e-04	k: 382	n:1750000
Cons ci ratio: 6.048617e-01	ci left: 1.681280e-05	ci right 3.178337e-05	k: 41	n:1750000
KS ci ratio: 9.157044e-03	ci left: 9.435782e-02	ci right 9.522638e-02	k: 165885	n:1750000
DOCK3   1750000 perm   1858 sec   (942 perm/sec)   p_kst 9.479143e-02   p_cons 2.342857e-05   p_joint 2.182857e-04

Joint ci ratio: 1.997598e-01	ci left: 1.969046e-04	ci right 2.411310e-04	k: 384	n:1760000
Cons ci ratio: 6.048617e-01	ci left: 1.671727e-05	ci right 3.160278e-05	k: 41	n:1760000
KS ci ratio: 9.130748e-03	ci left: 9.436363e-02	ci right 9.522975e-02	k: 166841	n:1760000
DOCK3   1760000 perm   1876 sec   (938 perm/sec)   p_kst 9.479602e-02   p_cons 2.329545e-05   p_joint 2.181818e-04

Joint ci ratio: 1.995009e-01	ci left: 1.963288e-04	ci right 2.403619e-04	k: 385	n:1770000
Cons ci ratio: 6.048618e-01	ci left: 1.662282e-05	ci right 3.142424e-05	k: 41	n:1770000
KS ci ratio: 9.105367e-03	ci left: 9.435642e-02	ci right 9.522005e-02	k: 167774	n:1770000
DOCK3   1770000 perm   1894 sec   (934 perm/sec)   p_kst 9.478757e-02   p_cons 2.316384e-05   p_joint 2.175141e-04

Joint ci ratio: 1.987301e-01	ci left: 1.968272e-04	ci right 2.407808e-04	k: 388	n:1780000
Cons ci ratio: 6.048618e-01	ci left: 1.652944e-05	ci right 3.124770e-05	k: 41	n:1780000
KS ci ratio: 9.080464e-03	ci left: 9.434425e-02	ci right 9.520539e-02	k: 168698	n:1780000
DOCK3   1780000 perm   1913 sec   (931 perm/sec)   p_kst 9.477416e-02   p_cons 2.303371e-05   p_joint 2.179775e-04

Joint ci ratio: 1.984752e-01	ci left: 1.962585e-04	ci right 2.400221e-04	k: 389	n:1790000
Cons ci ratio: 6.048619e-01	ci left: 1.643709e-05	ci right 3.107313e-05	k: 41	n:1790000
KS ci ratio: 9.055617e-03	ci left: 9.433500e-02	ci right 9.519369e-02	k: 169627	n:1790000
DOCK3   1790000 perm   1931 sec   (927 perm/sec)   p_kst 9.476369e-02   p_cons 2.290503e-05   p_joint 2.173184e-04

Joint ci ratio: 1.982213e-01	ci left: 1.956962e-04	ci right 2.392718e-04	k: 390	n:1800000
Cons ci ratio: 6.048619e-01	ci left: 1.634577e-05	ci right 3.090050e-05	k: 41	n:1800000
KS ci ratio: 9.029657e-03	ci left: 9.435081e-02	ci right 9.520716e-02	k: 170601	n:1800000
DOCK3   1800000 perm   1949 sec   (923 perm/sec)   p_kst 9.477833e-02   p_cons 2.277778e-05   p_joint 2.166667e-04

Joint ci ratio: 1.974652e-01	ci left: 1.961903e-04	ci right 2.396893e-04	k: 393	n:1810000
Cons ci ratio: 6.048619e-01	ci left: 1.625547e-05	ci right 3.072978e-05	k: 41	n:1810000
KS ci ratio: 9.005919e-03	ci left: 9.432840e-02	ci right 9.518229e-02	k: 171506	n:1810000
DOCK3   1810000 perm   1968 sec   (920 perm/sec)   p_kst 9.475470e-02   p_cons 2.265193e-05   p_joint 2.171271e-04

Joint ci ratio: 1.995015e-01	ci left: 1.909351e-04	ci right 2.337586e-04	k: 385	n:1820000
Cons ci ratio: 6.048620e-01	ci left: 1.616615e-05	ci right 3.056094e-05	k: 41	n:1820000
KS ci ratio: 8.981361e-03	ci left: 9.432543e-02	ci right 9.517696e-02	k: 172446	n:1820000
DOCK3   1820000 perm   1986 sec   (916 perm/sec)   p_kst 9.475055e-02   p_cons 2.252747e-05   p_joint 2.115385e-04

Joint ci ratio: 1.992437e-01	ci left: 1.904109e-04	ci right 2.330549e-04	k: 386	n:1830000
Cons ci ratio: 6.048620e-01	ci left: 1.607781e-05	ci right 3.039394e-05	k: 41	n:1830000
KS ci ratio: 8.956147e-03	ci left: 9.433886e-02	ci right 9.518810e-02	k: 173416	n:1830000
DOCK3   1830000 perm   2005 sec   (913 perm/sec)   p_kst 9.476284e-02   p_cons 2.240437e-05   p_joint 2.109290e-04

Joint ci ratio: 1.987308e-01	ci left: 1.904089e-04	ci right 2.329294e-04	k: 388	n:1840000
Cons ci ratio: 6.048621e-01	ci left: 1.599043e-05	ci right 3.022875e-05	k: 41	n:1840000
KS ci ratio: 8.931455e-03	ci left: 9.434618e-02	ci right 9.519314e-02	k: 174375	n:1840000
DOCK3   1840000 perm   2024 sec   (909 perm/sec)   p_kst 9.476902e-02   p_cons 2.228261e-05   p_joint 2.108696e-04

Joint ci ratio: 1.987309e-01	ci left: 1.893797e-04	ci right 2.316703e-04	k: 388	n:1850000
Cons ci ratio: 6.048621e-01	ci left: 1.590400e-05	ci right 3.006536e-05	k: 41	n:1850000
KS ci ratio: 8.904694e-03	ci left: 9.439712e-02	ci right 9.524198e-02	k: 175415	n:1850000
DOCK3   1850000 perm   2043 sec   (906 perm/sec)   p_kst 9.481892e-02   p_cons 2.216216e-05   p_joint 2.097297e-04

Joint ci ratio: 1.987311e-01	ci left: 1.883615e-04	ci right 2.304248e-04	k: 388	n:1860000
Cons ci ratio: 5.977873e-01	ci left: 1.627419e-05	ci right 3.052235e-05	k: 42	n:1860000
KS ci ratio: 8.880257e-03	ci left: 9.440728e-02	ci right 9.524990e-02	k: 176380	n:1860000
DOCK3   1860000 perm   2062 sec   (902 perm/sec)   p_kst 9.482796e-02   p_cons 2.258065e-05   p_joint 2.086022e-04

Joint ci ratio: 1.977170e-01	ci left: 1.893871e-04	ci right 2.314376e-04	k: 392	n:1870000
Cons ci ratio: 5.977874e-01	ci left: 1.618716e-05	ci right 3.035913e-05	k: 42	n:1870000
KS ci ratio: 8.857289e-03	ci left: 9.439278e-02	ci right 9.523308e-02	k: 177299	n:1870000
DOCK3   1870000 perm   2081 sec   (899 perm/sec)   p_kst 9.481230e-02   p_cons 2.245989e-05   p_joint 2.096257e-04

Joint ci ratio: 1.972158e-01	ci left: 1.893909e-04	ci right 2.313229e-04	k: 394	n:1880000
Cons ci ratio: 5.843519e-01	ci left: 1.700562e-05	ci right 3.141899e-05	k: 44	n:1880000
KS ci ratio: 8.833184e-03	ci left: 9.440391e-02	ci right 9.524202e-02	k: 178266	n:1880000
DOCK3   1880000 perm   2100 sec   (895 perm/sec)   p_kst 9.482234e-02   p_cons 2.340426e-05   p_joint 2.095745e-04

Joint ci ratio: 1.964711e-01	ci left: 1.898979e-04	ci right 2.317644e-04	k: 397	n:1890000
Cons ci ratio: 5.843520e-01	ci left: 1.691564e-05	ci right 3.125276e-05	k: 44	n:1890000
KS ci ratio: 8.808732e-03	ci left: 9.442550e-02	ci right 9.526146e-02	k: 179253	n:1890000
DOCK3   1890000 perm   2119 sec   (892 perm/sec)   p_kst 9.484286e-02   p_cons 2.328042e-05   p_joint 2.100529e-04

Joint ci ratio: 1.959793e-01	ci left: 1.898994e-04	ci right 2.316489e-04	k: 399	n:1900000
Cons ci ratio: 5.843520e-01	ci left: 1.682661e-05	ci right 3.108827e-05	k: 44	n:1900000
KS ci ratio: 8.784509e-03	ci left: 9.444633e-02	ci right 9.528017e-02	k: 180239	n:1900000
DOCK3   1900000 perm   2139 sec   (888 perm/sec)   p_kst 9.486263e-02   p_cons 2.315789e-05   p_joint 2.100000e-04

Joint ci ratio: 1.954912e-01	ci left: 1.899010e-04	ci right 2.315344e-04	k: 401	n:1910000
Cons ci ratio: 5.843521e-01	ci left: 1.673851e-05	ci right 3.092550e-05	k: 44	n:1910000
KS ci ratio: 8.762649e-03	ci left: 9.442463e-02	ci right 9.525618e-02	k: 181144	n:1910000
DOCK3   1910000 perm   2158 sec   (885 perm/sec)   p_kst 9.483979e-02   p_cons 2.303665e-05   p_joint 2.099476e-04

Joint ci ratio: 1.945257e-01	ci left: 1.908935e-04	ci right 2.325134e-04	k: 405	n:1920000
Cons ci ratio: 5.779654e-01	ci left: 1.709552e-05	ci right 3.136109e-05	k: 45	n:1920000
KS ci ratio: 8.739598e-03	ci left: 9.442966e-02	ci right 9.525906e-02	k: 182100	n:1920000
DOCK3   1920000 perm   2178 sec   (882 perm/sec)   p_kst 9.484375e-02   p_cons 2.343750e-05   p_joint 2.109375e-04

Joint ci ratio: 1.942866e-01	ci left: 1.903974e-04	ci right 2.318520e-04	k: 406	n:1930000
Cons ci ratio: 5.779654e-01	ci left: 1.700694e-05	ci right 3.119860e-05	k: 45	n:1930000
KS ci ratio: 8.715598e-03	ci left: 9.445688e-02	ci right 9.528423e-02	k: 183099	n:1930000
DOCK3   1930000 perm   2198 sec   (878 perm/sec)   p_kst 9.486995e-02   p_cons 2.331606e-05   p_joint 2.103627e-04

Joint ci ratio: 1.962252e-01	ci left: 1.854938e-04	ci right 2.263319e-04	k: 398	n:1940000
Cons ci ratio: 5.657961e-01	ci left: 1.780100e-05	ci right 3.221638e-05	k: 47	n:1940000
KS ci ratio: 8.692915e-03	ci left: 9.446170e-02	ci right 9.528693e-02	k: 184055	n:1940000
DOCK3   1940000 perm   2217 sec   (875 perm/sec)   p_kst 9.487371e-02   p_cons 2.422680e-05   p_joint 2.051546e-04

Joint ci ratio: 1.959798e-01	ci left: 1.850301e-04	ci right 2.257092e-04	k: 399	n:1950000
Cons ci ratio: 5.657962e-01	ci left: 1.770971e-05	ci right 3.205117e-05	k: 47	n:1950000
KS ci ratio: 8.669452e-03	ci left: 9.448541e-02	ci right 9.530861e-02	k: 185048	n:1950000
DOCK3   1950000 perm   2236 sec   (872 perm/sec)   p_kst 9.489641e-02   p_cons 2.410256e-05   p_joint 2.046154e-04

Joint ci ratio: 1.950071e-01	ci left: 1.860271e-04	ci right 2.266982e-04	k: 403	n:1960000
Cons ci ratio: 5.657962e-01	ci left: 1.761935e-05	ci right 3.188765e-05	k: 47	n:1960000
KS ci ratio: 8.647949e-03	ci left: 9.447375e-02	ci right 9.529480e-02	k: 185972	n:1960000
DOCK3   1960000 perm   2256 sec   (869 perm/sec)   p_kst 9.488367e-02   p_cons 2.397959e-05   p_joint 2.056122e-04

Joint ci ratio: 1.945262e-01	ci left: 1.860485e-04	ci right 2.266122e-04	k: 405	n:1970000
Cons ci ratio: 5.599929e-01	ci left: 1.796524e-05	ci right 3.230497e-05	k: 48	n:1970000
KS ci ratio: 8.626554e-03	ci left: 9.446322e-02	ci right 9.528213e-02	k: 186898	n:1970000
DOCK3   1970000 perm   2276 sec   (866 perm/sec)   p_kst 9.487208e-02   p_cons 2.436548e-05   p_joint 2.055838e-04

Joint ci ratio: 1.957356e-01	ci left: 1.827069e-04	ci right 2.228192e-04	k: 400	n:1980000
Cons ci ratio: 5.599929e-01	ci left: 1.787450e-05	ci right 3.214181e-05	k: 48	n:1980000
KS ci ratio: 8.605166e-03	ci left: 9.445582e-02	ci right 9.527263e-02	k: 187830	n:1980000
DOCK3   1980000 perm   2296 sec   (862 perm/sec)   p_kst 9.486364e-02   p_cons 2.424242e-05   p_joint 2.020202e-04

Joint ci ratio: 1.962257e-01	ci left: 1.808331e-04	ci right 2.206453e-04	k: 398	n:1990000
Cons ci ratio: 5.543646e-01	ci left: 1.821637e-05	ci right 3.255294e-05	k: 49	n:1990000
KS ci ratio: 8.582755e-03	ci left: 9.447208e-02	ci right 9.528689e-02	k: 188809	n:1990000
DOCK3   1990000 perm   2315 sec   (860 perm/sec)   p_kst 9.487889e-02   p_cons 2.462312e-05   p_joint 2.000000e-04

Joint ci ratio: 1.954921e-01	ci left: 1.813553e-04	ci right 2.211155e-04	k: 401	n:2000000
Cons ci ratio: 5.543646e-01	ci left: 1.812529e-05	ci right 3.239017e-05	k: 49	n:2000000
KS ci ratio: 8.561042e-03	ci left: 9.447769e-02	ci right 9.529048e-02	k: 189767	n:2000000
DOCK3   2000000 perm   2335 sec   (857 perm/sec)   p_kst 9.488350e-02   p_cons 2.450000e-05   p_joint 2.005000e-04

Joint ci ratio: 1.947667e-01	ci left: 1.818727e-04	ci right 2.215808e-04	k: 404	n:2010000
Cons ci ratio: 5.543647e-01	ci left: 1.803511e-05	ci right 3.222903e-05	k: 49	n:2010000
KS ci ratio: 8.539295e-03	ci left: 9.448723e-02	ci right 9.529802e-02	k: 190733	n:2010000
DOCK3   2010000 perm   2355 sec   (853 perm/sec)   p_kst 9.489204e-02   p_cons 2.437811e-05   p_joint 2.009950e-04

Joint ci ratio: 1.938119e-01	ci left: 1.828562e-04	ci right 2.225602e-04	k: 408	n:2020000
Cons ci ratio: 5.489027e-01	ci left: 1.837182e-05	ci right 3.263292e-05	k: 50	n:2020000
KS ci ratio: 8.519235e-03	ci left: 9.446603e-02	ci right 9.527473e-02	k: 191637	n:2020000
DOCK3   2020000 perm   2375 sec   (850 perm/sec)   p_kst 9.486980e-02   p_cons 2.475248e-05   p_joint 2.019802e-04

Joint ci ratio: 1.945268e-01	ci left: 1.805495e-04	ci right 2.199143e-04	k: 405	n:2030000
Cons ci ratio: 5.489028e-01	ci left: 1.828132e-05	ci right 3.247217e-05	k: 50	n:2030000
KS ci ratio: 8.559463e-03	ci left: 9.324341e-02	ci right 9.404543e-02	k: 190097	n:2030000
DOCK3   2030000 perm   2396 sec   (847 perm/sec)   p_kst 9.364384e-02   p_cons 2.463054e-05   p_joint 1.995074e-04

Joint ci ratio: 1.940495e-01	ci left: 1.805971e-04	ci right 2.198643e-04	k: 407	n:2040000
Cons ci ratio: 5.435991e-01	ci left: 1.861420e-05	ci right 3.287025e-05	k: 51	n:2040000
KS ci ratio: 8.539776e-03	ci left: 9.321825e-02	ci right 9.401820e-02	k: 190980	n:2040000
DOCK3   2040000 perm   2416 sec   (844 perm/sec)   p_kst 9.361765e-02   p_cons 2.500000e-05   p_joint 1.995098e-04

Joint ci ratio: 1.940496e-01	ci left: 1.797161e-04	ci right 2.187918e-04	k: 407	n:2050000
Cons ci ratio: 5.435992e-01	ci left: 1.852340e-05	ci right 3.270991e-05	k: 51	n:2050000
KS ci ratio: 8.519417e-03	ci left: 9.320940e-02	ci right 9.400736e-02	k: 191896	n:2050000
DOCK3   2050000 perm   2437 sec   (841 perm/sec)   p_kst 9.360780e-02   p_cons 2.487805e-05   p_joint 1.985366e-04

Joint ci ratio: 1.933400e-01	ci left: 1.802294e-04	ci right 2.192566e-04	k: 410	n:2060000
Cons ci ratio: 5.384464e-01	ci left: 1.885253e-05	ci right 3.310234e-05	k: 52	n:2060000
KS ci ratio: 8.498326e-03	ci left: 9.321808e-02	ci right 9.401413e-02	k: 192848	n:2060000
DOCK3   2060000 perm   2457 sec   (838 perm/sec)   p_kst 9.361553e-02   p_cons 2.524272e-05   p_joint 1.990291e-04

Joint ci ratio: 1.933401e-01	ci left: 1.793588e-04	ci right 2.181974e-04	k: 410	n:2070000
Cons ci ratio: 5.384464e-01	ci left: 1.876145e-05	ci right 3.294242e-05	k: 52	n:2070000
KS ci ratio: 8.478140e-03	ci left: 9.321173e-02	ci right 9.400583e-02	k: 193769	n:2070000
DOCK3   2070000 perm   2478 sec   (835 perm/sec)   p_kst 9.360821e-02   p_cons 2.512077e-05   p_joint 1.980676e-04

Joint ci ratio: 1.945273e-01	ci left: 1.762093e-04	ci right 2.146280e-04	k: 405	n:2080000
Cons ci ratio: 5.384464e-01	ci left: 1.867125e-05	ci right 3.278405e-05	k: 52	n:2080000
KS ci ratio: 8.457306e-03	ci left: 9.322129e-02	ci right 9.401350e-02	k: 194723	n:2080000
DOCK3   2080000 perm   2498 sec   (833 perm/sec)   p_kst 9.361683e-02   p_cons 2.500000e-05   p_joint 1.947115e-04

Joint ci ratio: 1.942882e-01	ci left: 1.758214e-04	ci right 2.141028e-04	k: 406	n:2090000
Cons ci ratio: 5.334374e-01	ci left: 1.899558e-05	ci right 3.316987e-05	k: 53	n:2090000
KS ci ratio: 8.437172e-03	ci left: 9.321976e-02	ci right 9.401007e-02	k: 195654	n:2090000
DOCK3   2090000 perm   2519 sec   (830 perm/sec)   p_kst 9.361435e-02   p_cons 2.535885e-05   p_joint 1.942584e-04

Joint ci ratio: 1.938126e-01	ci left: 1.758902e-04	ci right 2.140818e-04	k: 408	n:2100000
Cons ci ratio: 5.334374e-01	ci left: 1.890512e-05	ci right 3.301192e-05	k: 53	n:2100000
KS ci ratio: 8.416425e-03	ci left: 9.323347e-02	ci right 9.402194e-02	k: 196617	n:2100000
DOCK3   2100000 perm   2540 sec   (827 perm/sec)   p_kst 9.362714e-02   p_cons 2.523810e-05   p_joint 1.942857e-04

Joint ci ratio: 1.938127e-01	ci left: 1.750566e-04	ci right 2.130672e-04	k: 408	n:2110000
Cons ci ratio: 5.334375e-01	ci left: 1.881552e-05	ci right 3.285547e-05	k: 53	n:2110000
KS ci ratio: 8.397308e-03	ci left: 9.321724e-02	ci right 9.400378e-02	k: 197517	n:2110000
DOCK3   2110000 perm   2562 sec   (824 perm/sec)   p_kst 9.360995e-02   p_cons 2.511848e-05   p_joint 1.933649e-04

Joint ci ratio: 1.935762e-01	ci left: 1.746797e-04	ci right 2.125568e-04	k: 409	n:2120000
Cons ci ratio: 5.285657e-01	ci left: 1.913518e-05	ci right 3.323491e-05	k: 54	n:2120000
KS ci ratio: 8.376854e-03	ci left: 9.323084e-02	ci right 9.401556e-02	k: 198480	n:2120000
DOCK3   2120000 perm   2583 sec   (821 perm/sec)   p_kst 9.362264e-02   p_cons 2.547170e-05   p_joint 1.929245e-04

Joint ci ratio: 1.931058e-01	ci left: 1.747531e-04	ci right 2.125432e-04	k: 411	n:2130000
Cons ci ratio: 5.285657e-01	ci left: 1.904534e-05	ci right 3.307888e-05	k: 54	n:2130000
KS ci ratio: 8.356317e-03	ci left: 9.324899e-02	ci right 9.403193e-02	k: 199453	n:2130000
DOCK3   2130000 perm   2604 sec   (818 perm/sec)   p_kst 9.363991e-02   p_cons 2.535211e-05   p_joint 1.929577e-04

Joint ci ratio: 1.924065e-01	ci left: 1.752707e-04	ci right 2.130194e-04	k: 414	n:2140000
Cons ci ratio: 5.285658e-01	ci left: 1.895635e-05	ci right 3.292431e-05	k: 54	n:2140000
KS ci ratio: 8.337674e-03	ci left: 9.323152e-02	ci right 9.401257e-02	k: 200350	n:2140000
DOCK3   2140000 perm   2625 sec   (815 perm/sec)   p_kst 9.362150e-02   p_cons 2.523364e-05   p_joint 1.934579e-04

Joint ci ratio: 1.917148e-01	ci left: 1.757838e-04	ci right 2.134910e-04	k: 417	n:2150000
Cons ci ratio: 5.285658e-01	ci left: 1.886818e-05	ci right 3.277117e-05	k: 54	n:2150000
KS ci ratio: 8.319635e-03	ci left: 9.320448e-02	ci right 9.398359e-02	k: 201226	n:2150000
DOCK3   2150000 perm   2646 sec   (812 perm/sec)   p_kst 9.359349e-02   p_cons 2.511628e-05   p_joint 1.939535e-04

Joint ci ratio: 1.908039e-01	ci left: 1.767332e-04	ci right 2.144430e-04	k: 421	n:2160000
Cons ci ratio: 5.238251e-01	ci left: 1.918224e-05	ci right 3.314342e-05	k: 55	n:2160000
KS ci ratio: 8.300262e-03	ci left: 9.320726e-02	ci right 9.398457e-02	k: 202166	n:2160000
DOCK3   2160000 perm   2668 sec   (810 perm/sec)   p_kst 9.359537e-02   p_cons 2.546296e-05   p_joint 1.949074e-04

Joint ci ratio: 2.034988e-01	ci left: 1.535751e-04	ci right 1.887953e-04	k: 370	n:2170000
Cons ci ratio: 5.238252e-01	ci left: 1.909385e-05	ci right 3.299068e-05	k: 55	n:2170000
KS ci ratio: 8.282351e-03	ci left: 9.318287e-02	ci right 9.395830e-02	k: 203047	n:2170000
DOCK3   2170000 perm   2690 sec   (807 perm/sec)   p_kst 9.357005e-02   p_cons 2.534562e-05   p_joint 1.705069e-04

Joint ci ratio: 2.029525e-01	ci left: 1.537414e-04	ci right 1.888934e-04	k: 372	n:2180000
Cons ci ratio: 5.192098e-01	ci left: 1.940455e-05	ci right 3.335797e-05	k: 56	n:2180000
KS ci ratio: 8.264310e-03	ci left: 9.316375e-02	ci right 9.393733e-02	k: 203939	n:2180000
DOCK3   2180000 perm   2712 sec   (804 perm/sec)   p_kst 9.355000e-02   p_cons 2.568807e-05   p_joint 1.706422e-04

Joint ci ratio: 2.026810e-01	ci left: 1.534728e-04	ci right 1.885106e-04	k: 373	n:2190000
Cons ci ratio: 5.192098e-01	ci left: 1.931595e-05	ci right 3.320565e-05	k: 56	n:2190000
KS ci ratio: 8.245698e-03	ci left: 9.315894e-02	ci right 9.393072e-02	k: 204862	n:2190000
DOCK3   2190000 perm   2734 sec   (801 perm/sec)   p_kst 9.354429e-02   p_cons 2.557078e-05   p_joint 1.703196e-04

Joint ci ratio: 2.024106e-01	ci left: 1.532067e-04	ci right 1.881313e-04	k: 374	n:2200000
Cons ci ratio: 5.192098e-01	ci left: 1.922815e-05	ci right 3.305472e-05	k: 56	n:2200000
KS ci ratio: 8.226946e-03	ci left: 9.315961e-02	ci right 9.392964e-02	k: 205797	n:2200000
DOCK3   2200000 perm   2756 sec   (798 perm/sec)   p_kst 9.354409e-02   p_cons 2.545455e-05   p_joint 1.700000e-04

Joint ci ratio: 2.018730e-01	ci left: 1.533726e-04	ci right 1.882308e-04	k: 376	n:2210000
Cons ci ratio: 5.147143e-01	ci left: 1.953456e-05	ci right 3.341621e-05	k: 57	n:2210000
KS ci ratio: 8.208300e-03	ci left: 9.316074e-02	ci right 9.392902e-02	k: 206733	n:2210000
DOCK3   2210000 perm   2779 sec   (795 perm/sec)   p_kst 9.354434e-02   p_cons 2.579186e-05   p_joint 1.701357e-04

Joint ci ratio: 2.018731e-01	ci left: 1.526817e-04	ci right 1.873829e-04	k: 376	n:2220000
Cons ci ratio: 5.147144e-01	ci left: 1.944656e-05	ci right 3.326569e-05	k: 57	n:2220000
KS ci ratio: 8.190019e-03	ci left: 9.315690e-02	ci right 9.392343e-02	k: 207658	n:2220000
DOCK3   2220000 perm   2801 sec   (793 perm/sec)   p_kst 9.353964e-02   p_cons 2.567568e-05   p_joint 1.693694e-04

Joint ci ratio: 2.018732e-01	ci left: 1.519971e-04	ci right 1.865426e-04	k: 376	n:2230000
Cons ci ratio: 5.147144e-01	ci left: 1.935936e-05	ci right 3.311652e-05	k: 57	n:2230000
KS ci ratio: 8.172724e-03	ci left: 9.313521e-02	ci right 9.389993e-02	k: 208543	n:2230000
DOCK3   2230000 perm   2823 sec   (790 perm/sec)   p_kst 9.351704e-02   p_cons 2.556054e-05   p_joint 1.686099e-04

Joint ci ratio: 2.018732e-01	ci left: 1.513185e-04	ci right 1.857098e-04	k: 376	n:2240000
Cons ci ratio: 5.147144e-01	ci left: 1.927293e-05	ci right 3.296868e-05	k: 57	n:2240000
KS ci ratio: 8.154186e-03	ci left: 9.314178e-02	ci right 9.390481e-02	k: 209491	n:2240000
DOCK3   2240000 perm   2845 sec   (787 perm/sec)   p_kst 9.352277e-02   p_cons 2.544643e-05   p_joint 1.678571e-04

Joint ci ratio: 2.018733e-01	ci left: 1.506460e-04	ci right 1.848845e-04	k: 376	n:2250000
Cons ci ratio: 5.147145e-01	ci left: 1.918727e-05	ci right 3.282215e-05	k: 57	n:2250000
KS ci ratio: 8.135858e-03	ci left: 9.314651e-02	ci right 9.390787e-02	k: 210435	n:2250000
DOCK3   2250000 perm   2867 sec   (785 perm/sec)   p_kst 9.352667e-02   p_cons 2.533333e-05   p_joint 1.671111e-04

Joint ci ratio: 2.032258e-01	ci left: 1.478792e-04	ci right 1.817420e-04	k: 371	n:2260000
Cons ci ratio: 5.147145e-01	ci left: 1.910237e-05	ci right 3.267692e-05	k: 57	n:2260000
KS ci ratio: 8.118099e-03	ci left: 9.314194e-02	ci right 9.390158e-02	k: 211358	n:2260000
DOCK3   2260000 perm   2890 sec   (782 perm/sec)   p_kst 9.352124e-02   p_cons 2.522124e-05   p_joint 1.641593e-04

Joint ci ratio: 2.029532e-01	ci left: 1.476459e-04	ci right 1.814043e-04	k: 372	n:2270000
Cons ci ratio: 5.147145e-01	ci left: 1.901822e-05	ci right 3.253297e-05	k: 57	n:2270000
KS ci ratio: 8.101444e-03	ci left: 9.311674e-02	ci right 9.387461e-02	k: 212234	n:2270000
DOCK3   2270000 perm   2912 sec   (780 perm/sec)   p_kst 9.349515e-02   p_cons 2.511013e-05   p_joint 1.638767e-04

Joint ci ratio: 2.026817e-01	ci left: 1.474146e-04	ci right 1.810695e-04	k: 373	n:2280000
Cons ci ratio: 5.147146e-01	ci left: 1.893481e-05	ci right 3.239028e-05	k: 57	n:2280000
KS ci ratio: 8.084118e-03	ci left: 9.310796e-02	ci right 9.386413e-02	k: 213147	n:2280000
DOCK3   2280000 perm   2934 sec   (777 perm/sec)   p_kst 9.348553e-02   p_cons 2.500000e-05   p_joint 1.635965e-04

Joint ci ratio: 2.026818e-01	ci left: 1.467709e-04	ci right 1.802788e-04	k: 373	n:2290000
Cons ci ratio: 5.147146e-01	ci left: 1.885212e-05	ci right 3.224884e-05	k: 57	n:2290000
KS ci ratio: 8.066403e-03	ci left: 9.310971e-02	ci right 9.386424e-02	k: 214084	n:2290000
DOCK3   2290000 perm   2957 sec   (774 perm/sec)   p_kst 9.348646e-02   p_cons 2.489083e-05   p_joint 1.628821e-04

Joint ci ratio: 2.024114e-01	ci left: 1.465455e-04	ci right 1.799518e-04	k: 374	n:2300000
Cons ci ratio: 5.147146e-01	ci left: 1.877016e-05	ci right 3.210863e-05	k: 57	n:2300000
KS ci ratio: 8.048309e-03	ci left: 9.312188e-02	ci right 9.387480e-02	k: 215045	n:2300000
DOCK3   2300000 perm   2980 sec   (772 perm/sec)   p_kst 9.349783e-02   p_cons 2.478261e-05   p_joint 1.626087e-04

Joint ci ratio: 2.018738e-01	ci left: 1.467331e-04	ci right 1.800823e-04	k: 376	n:2310000
Cons ci ratio: 5.147146e-01	ci left: 1.868890e-05	ci right 3.196963e-05	k: 57	n:2310000
KS ci ratio: 8.030684e-03	ci left: 9.312659e-02	ci right 9.387789e-02	k: 215989	n:2310000
DOCK3   2310000 perm   3002 sec   (769 perm/sec)   p_kst 9.350173e-02   p_cons 2.467532e-05   p_joint 1.627706e-04

Joint ci ratio: 2.016066e-01	ci left: 1.465098e-04	ci right 1.797589e-04	k: 377	n:2320000
Cons ci ratio: 5.147147e-01	ci left: 1.860835e-05	ci right 3.183183e-05	k: 57	n:2320000
KS ci ratio: 8.013501e-03	ci left: 9.312438e-02	ci right 9.387405e-02	k: 216917	n:2320000
DOCK3   2320000 perm   3026 sec   (767 perm/sec)   p_kst 9.349871e-02   p_cons 2.456897e-05   p_joint 1.625000e-04

Joint ci ratio: 2.008112e-01	ci left: 1.471037e-04	ci right 1.803397e-04	k: 380	n:2330000
Cons ci ratio: 5.147147e-01	ci left: 1.852848e-05	ci right 3.169521e-05	k: 57	n:2330000
KS ci ratio: 7.995537e-03	ci left: 9.314104e-02	ci right 9.388916e-02	k: 217889	n:2330000
DOCK3   2330000 perm   3049 sec   (764 perm/sec)   p_kst 9.351459e-02   p_cons 2.446352e-05   p_joint 1.630901e-04

Joint ci ratio: 2.008113e-01	ci left: 1.464751e-04	ci right 1.795690e-04	k: 380	n:2340000
Cons ci ratio: 5.147147e-01	ci left: 1.844930e-05	ci right 3.155976e-05	k: 57	n:2340000
KS ci ratio: 7.978981e-03	ci left: 9.313026e-02	ci right 9.387673e-02	k: 218797	n:2340000
DOCK3   2340000 perm   3072 sec   (762 perm/sec)   p_kst 9.350299e-02   p_cons 2.435897e-05   p_joint 1.623932e-04

Joint ci ratio: 2.002863e-01	ci left: 1.466601e-04	ci right 1.796986e-04	k: 382	n:2350000
Cons ci ratio: 5.147148e-01	ci left: 1.837079e-05	ci right 3.142547e-05	k: 57	n:2350000
KS ci ratio: 7.962566e-03	ci left: 9.311872e-02	ci right 9.386356e-02	k: 219703	n:2350000
DOCK3   2350000 perm   3095 sec   (759 perm/sec)   p_kst 9.349064e-02   p_cons 2.425532e-05   p_joint 1.625532e-04

Joint ci ratio: 1.995064e-01	ci left: 1.472463e-04	ci right 1.802719e-04	k: 385	n:2360000
Cons ci ratio: 5.147148e-01	ci left: 1.829295e-05	ci right 3.129231e-05	k: 57	n:2360000
KS ci ratio: 7.946312e-03	ci left: 9.310601e-02	ci right 9.384922e-02	k: 220606	n:2360000
DOCK3   2360000 perm   3118 sec   (757 perm/sec)   p_kst 9.347712e-02   p_cons 2.415254e-05   p_joint 1.631356e-04

Joint ci ratio: 2.016069e-01	ci left: 1.434189e-04	ci right 1.759665e-04	k: 377	n:2370000
Cons ci ratio: 5.147148e-01	ci left: 1.821576e-05	ci right 3.116027e-05	k: 57	n:2370000
KS ci ratio: 7.929881e-03	ci left: 9.309931e-02	ci right 9.384092e-02	k: 221523	n:2370000
DOCK3   2370000 perm   3141 sec   (754 perm/sec)   p_kst 9.346962e-02   p_cons 2.405063e-05   p_joint 1.590717e-04

Joint ci ratio: 2.013408e-01	ci left: 1.432153e-04	ci right 1.756685e-04	k: 378	n:2380000
Cons ci ratio: 5.147148e-01	ci left: 1.813923e-05	ci right 3.102935e-05	k: 57	n:2380000
KS ci ratio: 7.913571e-03	ci left: 9.309225e-02	ci right 9.383227e-02	k: 222439	n:2380000
DOCK3   2380000 perm   3165 sec   (752 perm/sec)   p_kst 9.346176e-02   p_cons 2.394958e-05   p_joint 1.588235e-04

Joint ci ratio: 2.010757e-01	ci left: 1.430134e-04	ci right 1.753730e-04	k: 379	n:2390000
Cons ci ratio: 5.147149e-01	ci left: 1.806333e-05	ci right 3.089952e-05	k: 57	n:2390000
KS ci ratio: 7.896757e-03	ci left: 9.309819e-02	ci right 9.383668e-02	k: 223386	n:2390000
DOCK3   2390000 perm   3188 sec   (750 perm/sec)   p_kst 9.346695e-02   p_cons 2.384937e-05   p_joint 1.585774e-04

Joint ci ratio: 2.010758e-01	ci left: 1.424175e-04	ci right 1.746422e-04	k: 379	n:2400000
Cons ci ratio: 5.147149e-01	ci left: 1.798807e-05	ci right 3.077077e-05	k: 57	n:2400000
KS ci ratio: 7.880805e-03	ci left: 9.308787e-02	ci right 9.382478e-02	k: 224294	n:2400000
DOCK3   2400000 perm   3212 sec   (747 perm/sec)   p_kst 9.345583e-02   p_cons 2.375000e-05   p_joint 1.579167e-04

Joint ci ratio: 2.010759e-01	ci left: 1.418265e-04	ci right 1.739176e-04	k: 379	n:2410000
Cons ci ratio: 5.103342e-01	ci left: 1.827467e-05	ci right 3.111128e-05	k: 58	n:2410000
KS ci ratio: 7.865181e-03	ci left: 9.307266e-02	ci right 9.380798e-02	k: 225190	n:2410000
DOCK3   2410000 perm   3236 sec   (745 perm/sec)   p_kst 9.343983e-02   p_cons 2.406639e-05   p_joint 1.572614e-04

Joint ci ratio: 2.008118e-01	ci left: 1.416329e-04	ci right 1.736329e-04	k: 380	n:2420000
Cons ci ratio: 5.103342e-01	ci left: 1.819915e-05	ci right 3.098272e-05	k: 58	n:2420000
KS ci ratio: 7.849534e-03	ci left: 9.306006e-02	ci right 9.379381e-02	k: 226092	n:2420000
DOCK3   2420000 perm   3260 sec   (742 perm/sec)   p_kst 9.342645e-02   p_cons 2.396694e-05   p_joint 1.570248e-04

Joint ci ratio: 2.005488e-01	ci left: 1.414409e-04	ci right 1.733505e-04	k: 381	n:2430000
Cons ci ratio: 5.103342e-01	ci left: 1.812426e-05	ci right 3.085522e-05	k: 58	n:2430000
KS ci ratio: 7.833276e-03	ci left: 9.306275e-02	ci right 9.379500e-02	k: 227031	n:2430000
DOCK3   2430000 perm   3285 sec   (740 perm/sec)   p_kst 9.342840e-02   p_cons 2.386831e-05   p_joint 1.567901e-04

Joint ci ratio: 1.995069e-01	ci left: 1.424185e-04	ci right 1.743614e-04	k: 385	n:2440000
Cons ci ratio: 5.060635e-01	ci left: 1.840724e-05	ci right 3.119075e-05	k: 59	n:2440000
KS ci ratio: 7.817175e-03	ci left: 9.306421e-02	ci right 9.379496e-02	k: 227967	n:2440000
DOCK3   2440000 perm   3309 sec   (737 perm/sec)   p_kst 9.342910e-02   p_cons 2.418033e-05   p_joint 1.577869e-04

Joint ci ratio: 1.987361e-01	ci left: 1.430006e-04	ci right 1.749352e-04	k: 388	n:2450000
Cons ci ratio: 5.060635e-01	ci left: 1.833210e-05	ci right 3.106344e-05	k: 59	n:2450000
KS ci ratio: 7.800760e-03	ci left: 9.307461e-02	ci right 9.380390e-02	k: 228925	n:2450000
DOCK3   2450000 perm   3333 sec   (735 perm/sec)   p_kst 9.343878e-02   p_cons 2.408163e-05   p_joint 1.583673e-04

Joint ci ratio: 1.987361e-01	ci left: 1.424193e-04	ci right 1.742241e-04	k: 388	n:2460000
Cons ci ratio: 5.060635e-01	ci left: 1.825758e-05	ci right 3.093717e-05	k: 59	n:2460000
KS ci ratio: 7.785643e-03	ci left: 9.305896e-02	ci right 9.378671e-02	k: 229819	n:2460000
DOCK3   2460000 perm   3358 sec   (733 perm/sec)   p_kst 9.342236e-02   p_cons 2.398374e-05   p_joint 1.577236e-04

Joint ci ratio: 1.984812e-01	ci left: 1.422274e-04	ci right 1.739437e-04	k: 389	n:2470000
Cons ci ratio: 5.060636e-01	ci left: 1.818367e-05	ci right 3.081192e-05	k: 59	n:2470000
KS ci ratio: 7.769741e-03	ci left: 9.306244e-02	ci right 9.378872e-02	k: 230760	n:2470000
DOCK3   2470000 perm   3382 sec   (730 perm/sec)   p_kst 9.342510e-02   p_cons 2.388664e-05   p_joint 1.574899e-04

Joint ci ratio: 1.979742e-01	ci left: 1.424204e-04	ci right 1.740887e-04	k: 391	n:2480000
Cons ci ratio: 5.060636e-01	ci left: 1.811034e-05	ci right 3.068768e-05	k: 59	n:2480000
KS ci ratio: 7.754194e-03	ci left: 9.306025e-02	ci right 9.378506e-02	k: 231687	n:2480000
DOCK3   2480000 perm   3406 sec   (728 perm/sec)   p_kst 9.342218e-02   p_cons 2.379032e-05   p_joint 1.576613e-04

Joint ci ratio: 1.979743e-01	ci left: 1.418484e-04	ci right 1.733896e-04	k: 391	n:2490000
Cons ci ratio: 5.060636e-01	ci left: 1.803761e-05	ci right 3.056443e-05	k: 59	n:2490000
KS ci ratio: 7.738814e-03	ci left: 9.305648e-02	ci right 9.377981e-02	k: 232610	n:2490000
DOCK3   2490000 perm   3430 sec   (726 perm/sec)   p_kst 9.341767e-02   p_cons 2.369478e-05   p_joint 1.570281e-04

Joint ci ratio: 1.997663e-01	ci left: 1.386204e-04	ci right 1.697568e-04	k: 384	n:2500000
Cons ci ratio: 5.060636e-01	ci left: 1.796546e-05	ci right 3.044218e-05	k: 59	n:2500000
KS ci ratio: 7.723123e-03	ci left: 9.306152e-02	ci right 9.378342e-02	k: 233555	n:2500000
DOCK3   2500000 perm   3455 sec   (724 perm/sec)   p_kst 9.342200e-02   p_cons 2.360000e-05   p_joint 1.536000e-04

Joint ci ratio: 1.997663e-01	ci left: 1.380681e-04	ci right 1.690805e-04	k: 384	n:2510000
Cons ci ratio: 5.060637e-01	ci left: 1.789388e-05	ci right 3.032089e-05	k: 59	n:2510000
KS ci ratio: 7.708289e-03	ci left: 9.304982e-02	ci right 9.377024e-02	k: 234458	n:2510000
DOCK3   2510000 perm   3480 sec   (721 perm/sec)   p_kst 9.340956e-02   p_cons 2.350598e-05   p_joint 1.529880e-04

Joint ci ratio: 1.995074e-01	ci left: 1.378972e-04	ci right 1.688262e-04	k: 385	n:2520000
Cons ci ratio: 5.060637e-01	ci left: 1.782288e-05	ci right 3.020057e-05	k: 59	n:2520000
KS ci ratio: 7.692405e-03	ci left: 9.306318e-02	ci right 9.378220e-02	k: 235424	n:2520000
DOCK3   2520000 perm   3505 sec   (719 perm/sec)   p_kst 9.342222e-02   p_cons 2.341270e-05   p_joint 1.527778e-04

Joint ci ratio: 1.989925e-01	ci left: 1.381032e-04	ci right 1.689888e-04	k: 387	n:2530000
Cons ci ratio: 5.060637e-01	ci left: 1.775243e-05	ci right 3.008120e-05	k: 59	n:2530000
KS ci ratio: 7.677514e-03	ci left: 9.305670e-02	ci right 9.377427e-02	k: 236340	n:2530000
DOCK3   2530000 perm   3530 sec   (717 perm/sec)   p_kst 9.341502e-02   p_cons 2.332016e-05   p_joint 1.529644e-04

Joint ci ratio: 1.984816e-01	ci left: 1.383078e-04	ci right 1.691500e-04	k: 389	n:2540000
Cons ci ratio: 5.060637e-01	ci left: 1.768254e-05	ci right 2.996277e-05	k: 59	n:2540000
KS ci ratio: 7.662157e-03	ci left: 9.306245e-02	ci right 9.377863e-02	k: 237287	n:2540000
DOCK3   2540000 perm   3554 sec   (715 perm/sec)   p_kst 9.342008e-02   p_cons 2.322835e-05   p_joint 1.531496e-04

Joint ci ratio: 1.969721e-01	ci left: 1.400018e-04	ci right 1.709559e-04	k: 395	n:2550000
Cons ci ratio: 5.060638e-01	ci left: 1.761320e-05	ci right 2.984527e-05	k: 59	n:2550000
KS ci ratio: 7.646591e-03	ci left: 9.307482e-02	ci right 9.378963e-02	k: 238251	n:2550000
DOCK3   2550000 perm   3580 sec   (712 perm/sec)   p_kst 9.343176e-02   p_cons 2.313725e-05   p_joint 1.549020e-04

Joint ci ratio: 1.964765e-01	ci left: 1.401977e-04	ci right 1.711078e-04	k: 397	n:2560000
Cons ci ratio: 5.060638e-01	ci left: 1.754439e-05	ci right 2.972869e-05	k: 59	n:2560000
KS ci ratio: 7.630504e-03	ci left: 9.310074e-02	ci right 9.381424e-02	k: 239250	n:2560000
DOCK3   2560000 perm   3605 sec   (710 perm/sec)   p_kst 9.345703e-02   p_cons 2.304687e-05   p_joint 1.550781e-04

Joint ci ratio: 1.959847e-01	ci left: 1.403922e-04	ci right 1.712584e-04	k: 399	n:2570000
Cons ci ratio: 5.060638e-01	ci left: 1.747613e-05	ci right 2.961301e-05	k: 59	n:2570000
KS ci ratio: 7.616459e-03	ci left: 9.308334e-02	ci right 9.379539e-02	k: 240138	n:2570000
DOCK3   2570000 perm   3630 sec   (708 perm/sec)   p_kst 9.343891e-02   p_cons 2.295720e-05   p_joint 1.552529e-04

Joint ci ratio: 1.957402e-01	ci left: 1.402166e-04	ci right 1.710012e-04	k: 400	n:2580000
Cons ci ratio: 5.060638e-01	ci left: 1.740839e-05	ci right 2.949824e-05	k: 59	n:2580000
KS ci ratio: 7.602647e-03	ci left: 9.306260e-02	ci right 9.377320e-02	k: 241017	n:2580000
DOCK3   2580000 perm   3655 sec   (706 perm/sec)   p_kst 9.341744e-02   p_cons 2.286822e-05   p_joint 1.550388e-04

Joint ci ratio: 1.957403e-01	ci left: 1.396753e-04	ci right 1.703410e-04	k: 400	n:2590000
Cons ci ratio: 5.060639e-01	ci left: 1.734118e-05	ci right 2.938434e-05	k: 59	n:2590000
KS ci ratio: 7.588288e-03	ci left: 9.305589e-02	ci right 9.376509e-02	k: 241932	n:2590000
DOCK3   2590000 perm   3680 sec   (704 perm/sec)   p_kst 9.341004e-02   p_cons 2.277992e-05   p_joint 1.544402e-04

Joint ci ratio: 1.979749e-01	ci left: 1.358471e-04	ci right 1.660539e-04	k: 391	n:2600000
Cons ci ratio: 5.060639e-01	ci left: 1.727448e-05	ci right 2.927133e-05	k: 59	n:2600000
KS ci ratio: 7.573717e-03	ci left: 9.305577e-02	ci right 9.376360e-02	k: 242864	n:2600000
DOCK3   2600000 perm   3706 sec   (702 perm/sec)   p_kst 9.340923e-02   p_cons 2.269231e-05   p_joint 1.503846e-04

Joint ci ratio: 1.992500e-01	ci left: 1.335061e-04	ci right 1.634069e-04	k: 386	n:2610000
Cons ci ratio: 5.060639e-01	ci left: 1.720829e-05	ci right 2.915918e-05	k: 59	n:2610000
KS ci ratio: 7.559897e-03	ci left: 9.304073e-02	ci right 9.374715e-02	k: 243757	n:2610000
DOCK3   2610000 perm   3731 sec   (699 perm/sec)   p_kst 9.339349e-02   p_cons 2.260536e-05   p_joint 1.478927e-04

Joint ci ratio: 1.989931e-01	ci left: 1.333592e-04	ci right 1.631839e-04	k: 387	n:2620000
Cons ci ratio: 4.978345e-01	ci left: 1.780927e-05	ci right 2.990717e-05	k: 61	n:2620000
KS ci ratio: 7.545795e-03	ci left: 9.303381e-02	ci right 9.373885e-02	k: 244671	n:2620000
DOCK3   2620000 perm   3757 sec   (697 perm/sec)   p_kst 9.338588e-02   p_cons 2.328244e-05   p_joint 1.477099e-04

Joint ci ratio: 1.989931e-01	ci left: 1.328521e-04	ci right 1.625634e-04	k: 387	n:2630000
Cons ci ratio: 4.978345e-01	ci left: 1.774155e-05	ci right 2.979346e-05	k: 61	n:2630000
KS ci ratio: 7.530926e-03	ci left: 9.304592e-02	ci right 9.374965e-02	k: 245635	n:2630000
DOCK3   2630000 perm   3783 sec   (695 perm/sec)   p_kst 9.339734e-02   p_cons 2.319392e-05   p_joint 1.471483e-04

Joint ci ratio: 1.987372e-01	ci left: 1.327088e-04	ci right 1.623453e-04	k: 388	n:2640000
Cons ci ratio: 4.938676e-01	ci left: 1.800574e-05	ci right 3.010642e-05	k: 62	n:2640000
KS ci ratio: 7.516397e-03	ci left: 9.305227e-02	ci right 9.375469e-02	k: 246584	n:2640000
DOCK3   2640000 perm   3808 sec   (693 perm/sec)   p_kst 9.340303e-02   p_cons 2.348485e-05   p_joint 1.469697e-04

Joint ci ratio: 1.984823e-01	ci left: 1.325666e-04	ci right 1.621287e-04	k: 389	n:2650000
Cons ci ratio: 4.938676e-01	ci left: 1.793780e-05	ci right 2.999281e-05	k: 62	n:2650000
KS ci ratio: 7.502370e-03	ci left: 9.304915e-02	ci right 9.375023e-02	k: 247508	n:2650000
DOCK3   2650000 perm   3834 sec   (691 perm/sec)   p_kst 9.339925e-02   p_cons 2.339623e-05   p_joint 1.467925e-04

Joint ci ratio: 1.984823e-01	ci left: 1.320683e-04	ci right 1.615192e-04	k: 389	n:2660000
Cons ci ratio: 4.938676e-01	ci left: 1.787036e-05	ci right 2.988005e-05	k: 62	n:2660000
KS ci ratio: 7.487440e-03	ci left: 9.306820e-02	ci right 9.376802e-02	k: 248491	n:2660000
DOCK3   2660000 perm   3860 sec   (689 perm/sec)   p_kst 9.341767e-02   p_cons 2.330827e-05   p_joint 1.462406e-04

Joint ci ratio: 1.982284e-01	ci left: 1.319296e-04	ci right 1.613074e-04	k: 390	n:2670000
Cons ci ratio: 4.938677e-01	ci left: 1.780343e-05	ci right 2.976814e-05	k: 62	n:2670000
KS ci ratio: 7.473243e-03	ci left: 9.307253e-02	ci right 9.377105e-02	k: 249435	n:2670000
DOCK3   2670000 perm   3885 sec   (687 perm/sec)   p_kst 9.342135e-02   p_cons 2.322097e-05   p_joint 1.460674e-04

Joint ci ratio: 1.982284e-01	ci left: 1.314373e-04	ci right 1.607055e-04	k: 390	n:2680000
Cons ci ratio: 4.938677e-01	ci left: 1.773700e-05	ci right 2.965707e-05	k: 62	n:2680000
KS ci ratio: 7.458223e-03	ci left: 9.309731e-02	ci right 9.379461e-02	k: 250434	n:2680000
DOCK3   2680000 perm   3911 sec   (685 perm/sec)   p_kst 9.344552e-02   p_cons 2.313433e-05   p_joint 1.455224e-04

Joint ci ratio: 1.982285e-01	ci left: 1.309487e-04	ci right 1.601081e-04	k: 390	n:2690000
Cons ci ratio: 4.938677e-01	ci left: 1.767106e-05	ci right 2.954682e-05	k: 62	n:2690000
KS ci ratio: 7.444649e-03	ci left: 9.309111e-02	ci right 9.378709e-02	k: 251350	n:2690000
DOCK3   2690000 perm   3938 sec   (683 perm/sec)   p_kst 9.343866e-02   p_cons 2.304833e-05   p_joint 1.449814e-04

Joint ci ratio: 2.068759e-01	ci left: 1.192125e-04	ci right 1.470633e-04	k: 358	n:2700000
Cons ci ratio: 4.938677e-01	ci left: 1.760562e-05	ci right 2.943739e-05	k: 62	n:2700000
KS ci ratio: 7.430677e-03	ci left: 9.309568e-02	ci right 9.379038e-02	k: 252295	n:2700000
DOCK3   2700000 perm   3964 sec   (681 perm/sec)   p_kst 9.344259e-02   p_cons 2.296296e-05   p_joint 1.325926e-04

Joint ci ratio: 2.068759e-01	ci left: 1.187726e-04	ci right 1.465207e-04	k: 358	n:2710000
Cons ci ratio: 4.938677e-01	ci left: 1.754065e-05	ci right 2.932876e-05	k: 62	n:2710000
KS ci ratio: 7.417155e-03	ci left: 9.309174e-02	ci right 9.378514e-02	k: 253217	n:2710000
DOCK3   2710000 perm   3990 sec   (679 perm/sec)   p_kst 9.343801e-02   p_cons 2.287823e-05   p_joint 1.321033e-04

Joint ci ratio: 2.068760e-01	ci left: 1.183360e-04	ci right 1.459820e-04	k: 358	n:2720000
Cons ci ratio: 4.938678e-01	ci left: 1.747616e-05	ci right 2.922094e-05	k: 62	n:2720000
KS ci ratio: 7.402567e-03	ci left: 9.311389e-02	ci right 9.380609e-02	k: 254210	n:2720000
DOCK3   2720000 perm   4016 sec   (677 perm/sec)   p_kst 9.345956e-02   p_cons 2.279412e-05   p_joint 1.316176e-04

Joint ci ratio: 2.068760e-01	ci left: 1.179025e-04	ci right 1.454473e-04	k: 358	n:2730000
Cons ci ratio: 4.899942e-01	ci left: 1.773299e-05	ci right 2.952531e-05	k: 63	n:2730000
KS ci ratio: 7.389437e-03	ci left: 9.310443e-02	ci right 9.379533e-02	k: 255117	n:2730000
DOCK3   2730000 perm   4043 sec   (675 perm/sec)   p_kst 9.344945e-02   p_cons 2.307692e-05   p_joint 1.311355e-04

Joint ci ratio: 2.060170e-01	ci left: 1.185105e-04	ci right 1.460679e-04	k: 361	n:2740000
Cons ci ratio: 4.899942e-01	ci left: 1.766827e-05	ci right 2.941756e-05	k: 63	n:2740000
KS ci ratio: 7.375679e-03	ci left: 9.311108e-02	ci right 9.380073e-02	k: 256068	n:2740000
DOCK3   2740000 perm   4069 sec   (673 perm/sec)   p_kst 9.345547e-02   p_cons 2.299270e-05   p_joint 1.317518e-04

Joint ci ratio: 2.051685e-01	ci left: 1.191143e-04	ci right 1.466837e-04	k: 364	n:2750000
Cons ci ratio: 4.899942e-01	ci left: 1.760402e-05	ci right 2.931059e-05	k: 63	n:2750000
KS ci ratio: 7.362328e-03	ci left: 9.311005e-02	ci right 9.379844e-02	k: 256998	n:2750000
DOCK3   2750000 perm   4096 sec   (671 perm/sec)   p_kst 9.345382e-02   p_cons 2.290909e-05   p_joint 1.323636e-04

Joint ci ratio: 2.083322e-01	ci left: 1.149035e-04	ci right 1.419607e-04	k: 353	n:2760000
Cons ci ratio: 4.899942e-01	ci left: 1.754024e-05	ci right 2.920439e-05	k: 63	n:2760000
KS ci ratio: 7.349364e-03	ci left: 9.310180e-02	ci right 9.378891e-02	k: 257908	n:2760000
DOCK3   2760000 perm   4122 sec   (670 perm/sec)   p_kst 9.344493e-02   p_cons 2.282609e-05   p_joint 1.278986e-04

Joint ci ratio: 2.080386e-01	ci left: 1.148309e-04	ci right 1.418280e-04	k: 354	n:2770000
Cons ci ratio: 4.899943e-01	ci left: 1.747691e-05	ci right 2.909896e-05	k: 63	n:2770000
KS ci ratio: 7.335452e-03	ci left: 9.311703e-02	ci right 9.380295e-02	k: 258883	n:2770000
DOCK3   2770000 perm   4149 sec   (668 perm/sec)   p_kst 9.345957e-02   p_cons 2.274368e-05   p_joint 1.277978e-04

Joint ci ratio: 2.135230e-01	ci left: 1.082847e-04	ci right 1.345019e-04	k: 336	n:2780000
Cons ci ratio: 4.899943e-01	ci left: 1.741405e-05	ci right 2.899428e-05	k: 63	n:2780000
KS ci ratio: 7.321386e-03	ci left: 9.313755e-02	ci right 9.382229e-02	k: 259873	n:2780000
DOCK3   2780000 perm   4176 sec   (666 perm/sec)   p_kst 9.347950e-02   p_cons 2.266187e-05   p_joint 1.208633e-04

Joint ci ratio: 2.128922e-01	ci left: 1.085751e-04	ci right 1.347748e-04	k: 338	n:2790000
Cons ci ratio: 4.899943e-01	ci left: 1.735163e-05	ci right 2.889036e-05	k: 63	n:2790000
KS ci ratio: 7.307972e-03	ci left: 9.314467e-02	ci right 9.382821e-02	k: 260826	n:2790000
DOCK3   2790000 perm   4203 sec   (664 perm/sec)   p_kst 9.348602e-02   p_cons 2.258065e-05   p_joint 1.211470e-04

Joint ci ratio: 2.125789e-01	ci left: 1.085255e-04	ci right 1.346696e-04	k: 339	n:2800000
Cons ci ratio: 4.899943e-01	ci left: 1.728966e-05	ci right 2.878718e-05	k: 63	n:2800000
KS ci ratio: 7.295139e-03	ci left: 9.313998e-02	ci right 9.382229e-02	k: 261746	n:2800000
DOCK3   2800000 perm   4230 sec   (662 perm/sec)   p_kst 9.348071e-02   p_cons 2.250000e-05   p_joint 1.210714e-04

Joint ci ratio: 2.119564e-01	ci left: 1.088132e-04	ci right 1.349399e-04	k: 341	n:2810000
Cons ci ratio: 4.862104e-01	ci left: 1.754018e-05	ci right 2.908410e-05	k: 64	n:2810000
KS ci ratio: 7.282633e-03	ci left: 9.312929e-02	ci right 9.381034e-02	k: 262649	n:2810000
DOCK3   2810000 perm   4257 sec   (660 perm/sec)   p_kst 9.346940e-02   p_cons 2.277580e-05   p_joint 1.213523e-04

Joint ci ratio: 2.116472e-01	ci left: 1.087631e-04	ci right 1.348348e-04	k: 342	n:2820000
Cons ci ratio: 4.862105e-01	ci left: 1.747799e-05	ci right 2.898096e-05	k: 64	n:2820000
KS ci ratio: 7.270374e-03	ci left: 9.311442e-02	ci right 9.379421e-02	k: 263540	n:2820000
DOCK3   2820000 perm   4284 sec   (658 perm/sec)   p_kst 9.345390e-02   p_cons 2.269504e-05   p_joint 1.212766e-04

Joint ci ratio: 2.116472e-01	ci left: 1.083788e-04	ci right 1.343584e-04	k: 342	n:2830000
Cons ci ratio: 4.862105e-01	ci left: 1.741623e-05	ci right 2.887856e-05	k: 64	n:2830000
KS ci ratio: 7.257375e-03	ci left: 9.311836e-02	ci right 9.379696e-02	k: 264484	n:2830000
DOCK3   2830000 perm   4312 sec   (656 perm/sec)   p_kst 9.345724e-02   p_cons 2.261484e-05   p_joint 1.208481e-04

Joint ci ratio: 2.113394e-01	ci left: 1.083307e-04	ci right 1.342560e-04	k: 343	n:2840000
Cons ci ratio: 4.862105e-01	ci left: 1.735490e-05	ci right 2.877687e-05	k: 64	n:2840000
KS ci ratio: 7.244836e-03	ci left: 9.311313e-02	ci right 9.379051e-02	k: 265402	n:2840000
DOCK3   2840000 perm   4339 sec   (654 perm/sec)   p_kst 9.345141e-02   p_cons 2.253521e-05   p_joint 1.207746e-04

Joint ci ratio: 2.113394e-01	ci left: 1.079505e-04	ci right 1.337849e-04	k: 343	n:2850000
Cons ci ratio: 4.862105e-01	ci left: 1.729401e-05	ci right 2.867590e-05	k: 64	n:2850000
KS ci ratio: 7.232557e-03	ci left: 9.310339e-02	ci right 9.377954e-02	k: 266307	n:2850000
DOCK3   2850000 perm   4366 sec   (653 perm/sec)   p_kst 9.344105e-02   p_cons 2.245614e-05   p_joint 1.203509e-04

Joint ci ratio: 2.113395e-01	ci left: 1.075731e-04	ci right 1.333172e-04	k: 343	n:2860000
Cons ci ratio: 4.862105e-01	ci left: 1.723354e-05	ci right 2.857564e-05	k: 64	n:2860000
KS ci ratio: 7.219684e-03	ci left: 9.310907e-02	ci right 9.378406e-02	k: 267256	n:2860000
DOCK3   2860000 perm   4394 sec   (651 perm/sec)   p_kst 9.344615e-02   p_cons 2.237762e-05   p_joint 1.199301e-04

Joint ci ratio: 2.101213e-01	ci left: 1.085185e-04	ci right 1.343198e-04	k: 347	n:2870000
Cons ci ratio: 4.862106e-01	ci left: 1.717349e-05	ci right 2.847607e-05	k: 64	n:2870000
KS ci ratio: 7.206865e-03	ci left: 9.311506e-02	ci right 9.378889e-02	k: 268206	n:2870000
DOCK3   2870000 perm   4421 sec   (649 perm/sec)   p_kst 9.345157e-02   p_cons 2.229965e-05   p_joint 1.209059e-04

Joint ci ratio: 2.101213e-01	ci left: 1.081417e-04	ci right 1.338534e-04	k: 347	n:2880000
Cons ci ratio: 4.862106e-01	ci left: 1.711386e-05	ci right 2.837719e-05	k: 64	n:2880000
KS ci ratio: 7.193598e-03	ci left: 9.313315e-02	ci right 9.380586e-02	k: 269191	n:2880000
DOCK3   2880000 perm   4450 sec   (647 perm/sec)   p_kst 9.346910e-02   p_cons 2.222222e-05   p_joint 1.204861e-04

Joint ci ratio: 2.098201e-01	ci left: 1.080953e-04	ci right 1.337544e-04	k: 348	n:2890000
Cons ci ratio: 4.862106e-01	ci left: 1.705464e-05	ci right 2.827900e-05	k: 64	n:2890000
KS ci ratio: 7.181034e-03	ci left: 9.313625e-02	ci right 9.380781e-02	k: 270133	n:2890000
DOCK3   2890000 perm   4478 sec   (645 perm/sec)   p_kst 9.347163e-02   p_cons 2.214533e-05   p_joint 1.204152e-04

Joint ci ratio: 2.098201e-01	ci left: 1.077225e-04	ci right 1.332932e-04	k: 348	n:2900000
Cons ci ratio: 4.862106e-01	ci left: 1.699583e-05	ci right 2.818149e-05	k: 64	n:2900000
KS ci ratio: 7.169149e-03	ci left: 9.312488e-02	ci right 9.379524e-02	k: 271033	n:2900000
DOCK3   2900000 perm   4507 sec   (644 perm/sec)   p_kst 9.345966e-02   p_cons 2.206897e-05   p_joint 1.200000e-04

Joint ci ratio: 2.092215e-01	ci left: 1.080036e-04	ci right 1.335585e-04	k: 350	n:2910000
Cons ci ratio: 4.862106e-01	ci left: 1.693743e-05	ci right 2.808465e-05	k: 64	n:2910000
KS ci ratio: 7.156365e-03	ci left: 9.313623e-02	ci right 9.380547e-02	k: 271999	n:2910000
DOCK3   2910000 perm   4534 sec   (642 perm/sec)   p_kst 9.347045e-02   p_cons 2.199313e-05   p_joint 1.202749e-04

Joint ci ratio: 2.089241e-01	ci left: 1.079583e-04	ci right 1.334614e-04	k: 351	n:2920000
Cons ci ratio: 4.862107e-01	ci left: 1.687942e-05	ci right 2.798847e-05	k: 64	n:2920000
KS ci ratio: 7.143865e-03	ci left: 9.314237e-02	ci right 9.381049e-02	k: 272950	n:2920000
DOCK3   2920000 perm   4563 sec   (640 perm/sec)   p_kst 9.347603e-02   p_cons 2.191781e-05   p_joint 1.202055e-04

Joint ci ratio: 2.086279e-01	ci left: 1.079132e-04	ci right 1.333651e-04	k: 352	n:2930000
Cons ci ratio: 4.825131e-01	ci left: 1.712142e-05	ci right 2.827563e-05	k: 65	n:2930000
KS ci ratio: 7.131789e-03	ci left: 9.313996e-02	ci right 9.380692e-02	k: 273876	n:2930000
DOCK3   2930000 perm   4591 sec   (638 perm/sec)   p_kst 9.347304e-02   p_cons 2.218430e-05   p_joint 1.201365e-04

Joint ci ratio: 2.086280e-01	ci left: 1.075462e-04	ci right 1.329114e-04	k: 352	n:2940000
Cons ci ratio: 4.825131e-01	ci left: 1.706318e-05	ci right 2.817945e-05	k: 65	n:2940000
KS ci ratio: 7.119275e-03	ci left: 9.314945e-02	ci right 9.381530e-02	k: 274837	n:2940000
DOCK3   2940000 perm   4619 sec   (637 perm/sec)   p_kst 9.348197e-02   p_cons 2.210884e-05   p_joint 1.197279e-04

Joint ci ratio: 1.674385e-01	ci left: 1.702096e-04	ci right 2.016327e-04	k: 547	n:2950000
Cons ci ratio: 4.788987e-01	ci left: 1.730323e-05	ci right 2.846370e-05	k: 66	n:2950000
KS ci ratio: 7.107110e-03	ci left: 9.315210e-02	ci right 9.381683e-02	k: 275778	n:2950000
DOCK3   2950000 perm   4648 sec   (635 perm/sec)   p_kst 9.348407e-02   p_cons 2.237288e-05   p_joint 1.854237e-04

Joint ci ratio: 1.669820e-01	ci left: 1.706057e-04	ci right 2.020074e-04	k: 550	n:2960000
Cons ci ratio: 4.788987e-01	ci left: 1.724477e-05	ci right 2.836754e-05	k: 66	n:2960000
KS ci ratio: 7.095404e-03	ci left: 9.314530e-02	ci right 9.380888e-02	k: 276691	n:2960000
DOCK3   2960000 perm   4676 sec   (633 perm/sec)   p_kst 9.347669e-02   p_cons 2.229730e-05   p_joint 1.858108e-04

Joint ci ratio: 1.671339e-01	ci left: 1.697086e-04	ci right 2.009765e-04	k: 549	n:2970000
Cons ci ratio: 4.788987e-01	ci left: 1.718671e-05	ci right 2.827203e-05	k: 66	n:2970000
KS ci ratio: 7.083023e-03	ci left: 9.315602e-02	ci right 9.381851e-02	k: 277656	n:2970000
DOCK3   2970000 perm   4705 sec   (631 perm/sec)   p_kst 9.348687e-02   p_cons 2.222222e-05   p_joint 1.848485e-04

Joint ci ratio: 1.668308e-01	ci left: 1.697822e-04	ci right 2.010012e-04	k: 551	n:2980000
Cons ci ratio: 4.788988e-01	ci left: 1.712903e-05	ci right 2.817716e-05	k: 66	n:2980000
KS ci ratio: 7.071253e-03	ci left: 9.315360e-02	ci right 9.381497e-02	k: 278582	n:2980000
DOCK3   2980000 perm   4734 sec   (630 perm/sec)   p_kst 9.348389e-02   p_cons 2.214765e-05   p_joint 1.848993e-04

Joint ci ratio: 1.665294e-01	ci left: 1.698554e-04	ci right 2.010257e-04	k: 553	n:2990000
Cons ci ratio: 4.788988e-01	ci left: 1.707174e-05	ci right 2.808292e-05	k: 66	n:2990000
KS ci ratio: 7.058803e-03	ci left: 9.316890e-02	ci right 9.382921e-02	k: 279561	n:2990000
DOCK3   2990000 perm   4762 sec   (628 perm/sec)   p_kst 9.349866e-02   p_cons 2.207358e-05   p_joint 1.849498e-04

Joint ci ratio: 1.662296e-01	ci left: 1.699281e-04	ci right 2.010501e-04	k: 555	n:3000000
Cons ci ratio: 4.788988e-01	ci left: 1.701484e-05	ci right 2.798931e-05	k: 66	n:3000000
KS ci ratio: 7.047458e-03	ci left: 9.315914e-02	ci right 9.381831e-02	k: 280465	n:3000000
DOCK3   3000000 perm   4791 sec   (626 perm/sec)   p_kst 9.348833e-02   p_cons 2.200000e-05   p_joint 1.850000e-04

Joint ci ratio: 1.660803e-01	ci left: 1.696820e-04	ci right 2.007281e-04	k: 556	n:3010000
Cons ci ratio: 4.788988e-01	ci left: 1.695831e-05	ci right 2.789632e-05	k: 66	n:3010000
KS ci ratio: 7.035947e-03	ci left: 9.315475e-02	ci right 9.381281e-02	k: 281385	n:3010000
DOCK3   3010000 perm   4819 sec   (625 perm/sec)   p_kst 9.348339e-02   p_cons 2.192691e-05   p_joint 1.847176e-04

Joint ci ratio: 1.660804e-01	ci left: 1.691201e-04	ci right 2.000635e-04	k: 556	n:3020000
Cons ci ratio: 4.788988e-01	ci left: 1.690216e-05	ci right 2.780395e-05	k: 66	n:3020000
KS ci ratio: 7.024328e-03	ci left: 9.315435e-02	ci right 9.381133e-02	k: 282317	n:3020000
DOCK3   3020000 perm   4849 sec   (623 perm/sec)   p_kst 9.348245e-02   p_cons 2.185430e-05   p_joint 1.841060e-04

Joint ci ratio: 1.499777e-01	ci left: 2.085063e-04	ci right 2.426258e-04	k: 682	n:3030000
Cons ci ratio: 4.753644e-01	ci left: 1.713670e-05	ci right 2.808164e-05	k: 67	n:3030000
KS ci ratio: 7.012615e-03	ci left: 9.315759e-02	ci right 9.381348e-02	k: 283260	n:3030000
DOCK3   3030000 perm   4878 sec   (621 perm/sec)   p_kst 9.348515e-02   p_cons 2.211221e-05   p_joint 2.250825e-04

Joint ci ratio: 1.496494e-01	ci left: 2.087703e-04	ci right 2.428515e-04	k: 685	n:3040000
Cons ci ratio: 4.753644e-01	ci left: 1.708033e-05	ci right 2.798927e-05	k: 67	n:3040000
KS ci ratio: 7.000879e-03	ci left: 9.316278e-02	ci right 9.381760e-02	k: 284209	n:3040000
DOCK3   3040000 perm   4907 sec   (620 perm/sec)   p_kst 9.348980e-02   p_cons 2.203947e-05   p_joint 2.253289e-04

Joint ci ratio: 1.491069e-01	ci left: 2.096639e-04	ci right 2.437558e-04	k: 690	n:3050000
Cons ci ratio: 4.753644e-01	ci left: 1.702433e-05	ci right 2.789750e-05	k: 67	n:3050000
KS ci ratio: 6.988784e-03	ci left: 9.317808e-02	ci right 9.383188e-02	k: 285189	n:3050000
DOCK3   3050000 perm   4936 sec   (618 perm/sec)   p_kst 9.350459e-02   p_cons 2.196721e-05   p_joint 2.262295e-04

Joint ci ratio: 1.488916e-01	ci left: 2.096079e-04	ci right 2.436372e-04	k: 692	n:3060000
Cons ci ratio: 4.753645e-01	ci left: 1.696869e-05	ci right 2.780633e-05	k: 67	n:3060000
KS ci ratio: 6.977423e-03	ci left: 9.317696e-02	ci right 9.382969e-02	k: 286119	n:3060000
DOCK3   3060000 perm   4965 sec   (616 perm/sec)   p_kst 9.350294e-02   p_cons 2.189542e-05   p_joint 2.261438e-04

Joint ci ratio: 1.487843e-01	ci left: 2.092387e-04	ci right 2.431815e-04	k: 693	n:3070000
Cons ci ratio: 4.753645e-01	ci left: 1.691342e-05	ci right 2.771576e-05	k: 67	n:3070000
KS ci ratio: 6.965836e-03	ci left: 9.318269e-02	ci right 9.383437e-02	k: 287070	n:3070000
DOCK3   3070000 perm   4994 sec   (615 perm/sec)   p_kst 9.350814e-02   p_cons 2.182410e-05   p_joint 2.257329e-04

Joint ci ratio: 1.492151e-01	ci left: 2.073091e-04	ci right 2.410448e-04	k: 689	n:3080000
Cons ci ratio: 4.719072e-01	ci left: 1.714441e-05	ci right 2.798894e-05	k: 68	n:3080000
KS ci ratio: 6.955092e-03	ci left: 9.316925e-02	ci right 9.381983e-02	k: 287962	n:3080000
DOCK3   3080000 perm   5023 sec   (613 perm/sec)   p_kst 9.349416e-02   p_cons 2.207792e-05   p_joint 2.237013e-04

Joint ci ratio: 1.487844e-01	ci left: 2.078844e-04	ci right 2.416075e-04	k: 693	n:3090000
Cons ci ratio: 4.719072e-01	ci left: 1.708893e-05	ci right 2.789837e-05	k: 68	n:3090000
KS ci ratio: 6.943563e-03	ci left: 9.317626e-02	ci right 9.382580e-02	k: 288917	n:3090000
DOCK3   3090000 perm   5052 sec   (612 perm/sec)   p_kst 9.350065e-02   p_cons 2.200647e-05   p_joint 2.242718e-04

Joint ci ratio: 1.486774e-01	ci left: 2.075244e-04	ci right 2.411627e-04	k: 694	n:3100000
Cons ci ratio: 4.685242e-01	ci left: 1.731814e-05	ci right 2.816892e-05	k: 69	n:3100000
KS ci ratio: 6.931867e-03	ci left: 9.318870e-02	ci right 9.383722e-02	k: 289889	n:3100000
DOCK3   3100000 perm   5082 sec   (610 perm/sec)   p_kst 9.351258e-02   p_cons 2.225806e-05   p_joint 2.238710e-04

Joint ci ratio: 1.485706e-01	ci left: 2.071667e-04	ci right 2.407207e-04	k: 695	n:3110000
Cons ci ratio: 4.685243e-01	ci left: 1.726246e-05	ci right 2.807835e-05	k: 69	n:3110000
KS ci ratio: 6.920361e-03	ci left: 9.319784e-02	ci right 9.384536e-02	k: 290851	n:3110000
DOCK3   3110000 perm   5112 sec   (608 perm/sec)   p_kst 9.352122e-02   p_cons 2.218650e-05   p_joint 2.234727e-04

Joint ci ratio: 1.485706e-01	ci left: 2.065027e-04	ci right 2.399492e-04	k: 695	n:3120000
Cons ci ratio: 4.685243e-01	ci left: 1.720713e-05	ci right 2.798835e-05	k: 69	n:3120000
KS ci ratio: 6.908912e-03	ci left: 9.320694e-02	ci right 9.385343e-02	k: 291813	n:3120000
DOCK3   3120000 perm   5142 sec   (607 perm/sec)   p_kst 9.352981e-02   p_cons 2.211538e-05   p_joint 2.227564e-04

Joint ci ratio: 1.480398e-01	ci left: 2.073811e-04	ci right 2.408393e-04	k: 700	n:3130000
Cons ci ratio: 4.685243e-01	ci left: 1.715215e-05	ci right 2.789893e-05	k: 69	n:3130000
KS ci ratio: 6.898052e-03	ci left: 9.320289e-02	ci right 9.384834e-02	k: 292734	n:3130000
DOCK3   3130000 perm   5172 sec   (605 perm/sec)   p_kst 9.352524e-02   p_cons 2.204473e-05   p_joint 2.236422e-04

Joint ci ratio: 1.479343e-01	ci left: 2.070274e-04	ci right 2.404025e-04	k: 701	n:3140000
Cons ci ratio: 4.685243e-01	ci left: 1.709753e-05	ci right 2.781008e-05	k: 69	n:3140000
KS ci ratio: 6.887308e-03	ci left: 9.319728e-02	ci right 9.384168e-02	k: 293650	n:3140000
DOCK3   3140000 perm   5202 sec   (604 perm/sec)   p_kst 9.351911e-02   p_cons 2.197452e-05   p_joint 2.232484e-04

Joint ci ratio: 1.475146e-01	ci left: 2.075930e-04	ci right 2.409561e-04	k: 705	n:3150000
Cons ci ratio: 4.685243e-01	ci left: 1.704325e-05	ci right 2.772180e-05	k: 69	n:3150000
KS ci ratio: 6.876602e-03	ci left: 9.319203e-02	ci right 9.383539e-02	k: 294567	n:3150000
DOCK3   3150000 perm   5232 sec   (602 perm/sec)   p_kst 9.351333e-02   p_cons 2.190476e-05   p_joint 2.238095e-04

Joint ci ratio: 1.472022e-01	ci left: 2.078505e-04	ci right 2.411779e-04	k: 708	n:3160000
Cons ci ratio: 4.652131e-01	ci left: 1.726853e-05	ci right 2.798751e-05	k: 70	n:3160000
KS ci ratio: 6.865996e-03	ci left: 9.318554e-02	ci right 9.382786e-02	k: 295480	n:3160000
DOCK3   3160000 perm   5262 sec   (601 perm/sec)   p_kst 9.350633e-02   p_cons 2.215190e-05   p_joint 2.240506e-04

Joint ci ratio: 1.470985e-01	ci left: 2.074986e-04	ci right 2.407441e-04	k: 709	n:3170000
Cons ci ratio: 4.652131e-01	ci left: 1.721406e-05	ci right 2.789922e-05	k: 70	n:3170000
KS ci ratio: 6.854776e-03	ci left: 9.319548e-02	ci right 9.383681e-02	k: 296445	n:3170000
DOCK3   3170000 perm   5292 sec   (599 perm/sec)   p_kst 9.351577e-02   p_cons 2.208202e-05   p_joint 2.236593e-04

Joint ci ratio: 1.469950e-01	ci left: 2.071490e-04	ci right 2.403131e-04	k: 710	n:3180000
Cons ci ratio: 4.652131e-01	ci left: 1.715992e-05	ci right 2.781149e-05	k: 70	n:3180000
KS ci ratio: 6.844080e-03	ci left: 9.319373e-02	ci right 9.383405e-02	k: 297373	n:3180000
DOCK3   3180000 perm   5322 sec   (597 perm/sec)   p_kst 9.351352e-02   p_cons 2.201258e-05   p_joint 2.232704e-04

Joint ci ratio: 1.483579e-01	ci left: 2.025749e-04	ci right 2.353341e-04	k: 697	n:3190000
Cons ci ratio: 4.619711e-01	ci left: 1.738298e-05	ci right 2.807416e-05	k: 71	n:3190000
KS ci ratio: 6.833094e-03	ci left: 9.320045e-02	ci right 9.383978e-02	k: 298328	n:3190000
DOCK3   3190000 perm   5353 sec   (596 perm/sec)   p_kst 9.351975e-02   p_cons 2.225705e-05   p_joint 2.184953e-04

Joint ci ratio: 1.510890e-01	ci left: 1.944220e-04	ci right 2.264938e-04	k: 672	n:3200000
Cons ci ratio: 4.619712e-01	ci left: 1.732866e-05	ci right 2.798643e-05	k: 71	n:3200000
KS ci ratio: 6.822461e-03	ci left: 9.319964e-02	ci right 9.383797e-02	k: 299259	n:3200000
DOCK3   3200000 perm   5383 sec   (594 perm/sec)   p_kst 9.351844e-02   p_cons 2.218750e-05   p_joint 2.100000e-04

Joint ci ratio: 1.509769e-01	ci left: 1.941161e-04	ci right 2.261116e-04	k: 673	n:3210000
Cons ci ratio: 4.619712e-01	ci left: 1.727468e-05	ci right 2.789925e-05	k: 71	n:3210000
KS ci ratio: 6.811316e-03	ci left: 9.321283e-02	ci right 9.385021e-02	k: 300235	n:3210000
DOCK3   3210000 perm   5413 sec   (593 perm/sec)   p_kst 9.353115e-02   p_cons 2.211838e-05   p_joint 2.096573e-04

Joint ci ratio: 1.507534e-01	ci left: 1.941109e-04	ci right 2.260539e-04	k: 675	n:3220000
Cons ci ratio: 4.619712e-01	ci left: 1.722103e-05	ci right 2.781260e-05	k: 71	n:3220000
KS ci ratio: 6.800585e-03	ci left: 9.321695e-02	ci right 9.385334e-02	k: 301182	n:3220000
DOCK3   3220000 perm   5444 sec   (591 perm/sec)   p_kst 9.353478e-02   p_cons 2.204969e-05   p_joint 2.096273e-04

Joint ci ratio: 1.514271e-01	ci left: 1.917225e-04	ci right 2.234263e-04	k: 669	n:3230000
Cons ci ratio: 4.619712e-01	ci left: 1.716771e-05	ci right 2.772650e-05	k: 71	n:3230000
KS ci ratio: 6.790600e-03	ci left: 9.320374e-02	ci right 9.383910e-02	k: 302073	n:3230000
DOCK3   3230000 perm   5474 sec   (590 perm/sec)   p_kst 9.352105e-02   p_cons 2.198142e-05   p_joint 2.071207e-04

Joint ci ratio: 1.513142e-01	ci left: 1.914278e-04	ci right 2.230570e-04	k: 670	n:3240000
Cons ci ratio: 4.619712e-01	ci left: 1.711473e-05	ci right 2.764092e-05	k: 71	n:3240000
KS ci ratio: 6.779584e-03	ci left: 9.321741e-02	ci right 9.385183e-02	k: 303051	n:3240000
DOCK3   3240000 perm   5505 sec   (589 perm/sec)   p_kst 9.353426e-02   p_cons 2.191358e-05   p_joint 2.067901e-04

Joint ci ratio: 1.512016e-01	ci left: 1.911348e-04	ci right 2.226900e-04	k: 671	n:3250000
Cons ci ratio: 4.619712e-01	ci left: 1.706207e-05	ci right 2.755587e-05	k: 71	n:3250000
KS ci ratio: 6.768843e-03	ci left: 9.322547e-02	ci right 9.385894e-02	k: 304011	n:3250000
DOCK3   3250000 perm   5535 sec   (587 perm/sec)   p_kst 9.354185e-02   p_cons 2.184615e-05   p_joint 2.064615e-04

Joint ci ratio: 1.508652e-01	ci left: 1.914340e-04	ci right 2.229619e-04	k: 674	n:3260000
Cons ci ratio: 4.587961e-01	ci left: 1.728089e-05	ci right 2.781344e-05	k: 72	n:3260000
KS ci ratio: 6.758605e-03	ci left: 9.322216e-02	ci right 9.385464e-02	k: 304934	n:3260000
DOCK3   3260000 perm   5566 sec   (586 perm/sec)   p_kst 9.353804e-02   p_cons 2.208589e-05   p_joint 2.067485e-04

Joint ci ratio: 1.506422e-01	ci left: 1.914371e-04	ci right 2.229148e-04	k: 676	n:3270000
Cons ci ratio: 4.587961e-01	ci left: 1.722804e-05	ci right 2.772839e-05	k: 72	n:3270000
KS ci ratio: 6.747769e-03	ci left: 9.323504e-02	ci right 9.386659e-02	k: 305910	n:3270000
DOCK3   3270000 perm   5597 sec   (584 perm/sec)   p_kst 9.355046e-02   p_cons 2.201835e-05   p_joint 2.067278e-04

Joint ci ratio: 1.505311e-01	ci left: 1.911468e-04	ci right 2.225515e-04	k: 677	n:3280000
Cons ci ratio: 4.587961e-01	ci left: 1.717552e-05	ci right 2.764385e-05	k: 72	n:3280000
KS ci ratio: 6.737869e-03	ci left: 9.322563e-02	ci right 9.385619e-02	k: 306813	n:3280000
DOCK3   3280000 perm   5628 sec   (583 perm/sec)   p_kst 9.354055e-02   p_cons 2.195122e-05   p_joint 2.064024e-04

Joint ci ratio: 1.504202e-01	ci left: 1.908583e-04	ci right 2.221904e-04	k: 678	n:3290000
Cons ci ratio: 4.556855e-01	ci left: 1.739224e-05	ci right 2.789856e-05	k: 73	n:3290000
KS ci ratio: 6.727891e-03	ci left: 9.321931e-02	ci right 9.384889e-02	k: 307726	n:3290000
DOCK3   3290000 perm   5659 sec   (581 perm/sec)   p_kst 9.353374e-02   p_cons 2.218845e-05   p_joint 2.060790e-04

Joint ci ratio: 1.501992e-01	ci left: 1.908633e-04	ci right 2.221460e-04	k: 680	n:3300000
Cons ci ratio: 4.556856e-01	ci left: 1.733954e-05	ci right 2.781402e-05	k: 73	n:3300000
KS ci ratio: 6.718150e-03	ci left: 9.320818e-02	ci right 9.383677e-02	k: 308623	n:3300000
DOCK3   3300000 perm   5690 sec   (580 perm/sec)   p_kst 9.352212e-02   p_cons 2.212121e-05   p_joint 2.060606e-04

Joint ci ratio: 1.500891e-01	ci left: 1.905774e-04	ci right 2.217883e-04	k: 681	n:3310000
Cons ci ratio: 4.556856e-01	ci left: 1.728715e-05	ci right 2.772999e-05	k: 73	n:3310000
KS ci ratio: 6.707985e-03	ci left: 9.320889e-02	ci right 9.383653e-02	k: 309559	n:3310000
DOCK3   3310000 perm   5722 sec   (578 perm/sec)   p_kst 9.352236e-02   p_cons 2.205438e-05   p_joint 2.057402e-04

Joint ci ratio: 1.499792e-01	ci left: 1.902933e-04	ci right 2.214328e-04	k: 682	n:3320000
Cons ci ratio: 4.556856e-01	ci left: 1.723508e-05	ci right 2.764647e-05	k: 73	n:3320000
KS ci ratio: 6.698008e-03	ci left: 9.320599e-02	ci right 9.383267e-02	k: 310483	n:3320000
DOCK3   3320000 perm   5771 sec   (575 perm/sec)   p_kst 9.351898e-02   p_cons 2.198795e-05   p_joint 2.054217e-04

Joint ci ratio: 1.495419e-01	ci left: 1.908780e-04	ci right 2.220140e-04	k: 686	n:3330000
Cons ci ratio: 4.556856e-01	ci left: 1.718333e-05	ci right 2.756345e-05	k: 73	n:3330000
KS ci ratio: 6.688254e-03	ci left: 9.319861e-02	ci right 9.382432e-02	k: 311392	n:3330000
DOCK3   3330000 perm   5814 sec   (573 perm/sec)   p_kst 9.351111e-02   p_cons 2.192192e-05   p_joint 2.060060e-04

Joint ci ratio: 1.494332e-01	ci left: 1.905947e-04	ci right 2.216599e-04	k: 687	n:3340000
Cons ci ratio: 4.556856e-01	ci left: 1.713188e-05	ci right 2.748092e-05	k: 73	n:3340000
KS ci ratio: 6.678412e-03	ci left: 9.319456e-02	ci right 9.381932e-02	k: 312312	n:3340000
DOCK3   3340000 perm   5846 sec   (571 perm/sec)   p_kst 9.350659e-02   p_cons 2.185629e-05   p_joint 2.056886e-04

Joint ci ratio: 1.493247e-01	ci left: 1.903131e-04	ci right 2.213079e-04	k: 688	n:3350000
Cons ci ratio: 4.556856e-01	ci left: 1.708074e-05	ci right 2.739889e-05	k: 73	n:3350000
KS ci ratio: 6.668591e-03	ci left: 9.319113e-02	ci right 9.381495e-02	k: 313234	n:3350000
DOCK3   3350000 perm   5878 sec   (570 perm/sec)   p_kst 9.350269e-02   p_cons 2.179104e-05   p_joint 2.053731e-04

Joint ci ratio: 1.493248e-01	ci left: 1.897467e-04	ci right 2.206492e-04	k: 688	n:3360000
Cons ci ratio: 4.556857e-01	ci left: 1.702990e-05	ci right 2.731735e-05	k: 73	n:3360000
KS ci ratio: 6.658929e-03	ci left: 9.318475e-02	ci right 9.380762e-02	k: 314146	n:3360000
DOCK3   3360000 perm   5909 sec   (569 perm/sec)   p_kst 9.349583e-02   p_cons 2.172619e-05   p_joint 2.047619e-04

Joint ci ratio: 1.490007e-01	ci left: 1.900406e-04	ci right 2.209179e-04	k: 691	n:3370000
Cons ci ratio: 4.526375e-01	ci left: 1.724215e-05	ci right 2.756675e-05	k: 74	n:3370000
KS ci ratio: 6.649286e-03	ci left: 9.317900e-02	ci right 9.380093e-02	k: 315060	n:3370000
DOCK3   3370000 perm   5941 sec   (567 perm/sec)   p_kst 9.348961e-02   p_cons 2.195846e-05   p_joint 2.050445e-04

Joint ci ratio: 1.488932e-01	ci left: 1.897632e-04	ci right 2.205711e-04	k: 692	n:3380000
Cons ci ratio: 4.526375e-01	ci left: 1.719114e-05	ci right 2.748520e-05	k: 74	n:3380000
KS ci ratio: 6.639418e-03	ci left: 9.318008e-02	ci right 9.380109e-02	k: 315997	n:3380000
DOCK3   3380000 perm   5973 sec   (566 perm/sec)   p_kst 9.349024e-02   p_cons 2.189349e-05   p_joint 2.047337e-04

Joint ci ratio: 1.487859e-01	ci left: 1.894874e-04	ci right 2.202265e-04	k: 693	n:3390000
Cons ci ratio: 4.496497e-01	ci left: 1.740188e-05	ci right 2.773241e-05	k: 75	n:3390000
KS ci ratio: 6.629859e-03	ci left: 9.317438e-02	ci right 9.379445e-02	k: 316911	n:3390000
DOCK3   3390000 perm   6006 sec   (564 perm/sec)   p_kst 9.348407e-02   p_cons 2.212389e-05   p_joint 2.044248e-04

Joint ci ratio: 1.485720e-01	ci left: 1.894965e-04	ci right 2.201888e-04	k: 695	n:3400000
Cons ci ratio: 4.496497e-01	ci left: 1.735070e-05	ci right 2.765085e-05	k: 75	n:3400000
KS ci ratio: 6.619963e-03	ci left: 9.317841e-02	ci right 9.379758e-02	k: 317858	n:3400000
DOCK3   3400000 perm   6038 sec   (563 perm/sec)   p_kst 9.348765e-02   p_cons 2.205882e-05   p_joint 2.044118e-04

Joint ci ratio: 1.483590e-01	ci left: 1.895055e-04	ci right 2.201514e-04	k: 697	n:3410000
Cons ci ratio: 4.467204e-01	ci left: 1.755997e-05	ci right 2.789591e-05	k: 76	n:3410000
KS ci ratio: 6.610133e-03	ci left: 9.318183e-02	ci right 9.380010e-02	k: 318803	n:3410000
DOCK3   3410000 perm   6071 sec   (562 perm/sec)   p_kst 9.349062e-02   p_cons 2.228739e-05   p_joint 2.043988e-04

Joint ci ratio: 1.479357e-01	ci left: 1.900776e-04	ci right 2.207206e-04	k: 701	n:3420000
Cons ci ratio: 4.467204e-01	ci left: 1.750862e-05	ci right 2.781435e-05	k: 76	n:3420000
KS ci ratio: 6.600666e-03	ci left: 9.317705e-02	ci right 9.379440e-02	k: 319720	n:3420000
DOCK3   3420000 perm   6103 sec   (560 perm/sec)   p_kst 9.348538e-02   p_cons 2.222222e-05   p_joint 2.049708e-04

Joint ci ratio: 1.478304e-01	ci left: 1.898042e-04	ci right 2.203794e-04	k: 702	n:3430000
Cons ci ratio: 4.467204e-01	ci left: 1.745758e-05	ci right 2.773326e-05	k: 76	n:3430000
KS ci ratio: 6.590900e-03	ci left: 9.318104e-02	ci right 9.379749e-02	k: 320667	n:3430000
DOCK3   3430000 perm   6135 sec   (559 perm/sec)   p_kst 9.348892e-02   p_cons 2.215743e-05   p_joint 2.046647e-04

Joint ci ratio: 1.477254e-01	ci left: 1.895324e-04	ci right 2.200402e-04	k: 703	n:3440000
Cons ci ratio: 4.467204e-01	ci left: 1.740683e-05	ci right 2.765264e-05	k: 76	n:3440000
KS ci ratio: 6.581820e-03	ci left: 9.316845e-02	ci right 9.378398e-02	k: 321557	n:3440000
DOCK3   3440000 perm   6167 sec   (558 perm/sec)   p_kst 9.347587e-02   p_cons 2.209302e-05   p_joint 2.043605e-04

Joint ci ratio: 1.475160e-01	ci left: 1.895413e-04	ci right 2.200035e-04	k: 705	n:3450000
Cons ci ratio: 4.467204e-01	ci left: 1.735637e-05	ci right 2.757248e-05	k: 76	n:3450000
KS ci ratio: 6.572687e-03	ci left: 9.315826e-02	ci right 9.377286e-02	k: 322455	n:3450000
DOCK3   3450000 perm   6200 sec   (556 perm/sec)   p_kst 9.346522e-02   p_cons 2.202899e-05   p_joint 2.043478e-04

Joint ci ratio: 1.474117e-01	ci left: 1.892719e-04	ci right 2.196674e-04	k: 706	n:3460000
Cons ci ratio: 4.467204e-01	ci left: 1.730621e-05	ci right 2.749279e-05	k: 76	n:3460000
KS ci ratio: 6.564040e-03	ci left: 9.313658e-02	ci right 9.375023e-02	k: 323313	n:3460000
DOCK3   3460000 perm   6233 sec   (555 perm/sec)   p_kst 9.344306e-02   p_cons 2.196532e-05   p_joint 2.040462e-04

Joint ci ratio: 1.470999e-01	ci left: 1.895591e-04	ci right 2.199307e-04	k: 709	n:3470000
Cons ci ratio: 4.467204e-01	ci left: 1.725634e-05	ci right 2.741357e-05	k: 76	n:3470000
KS ci ratio: 6.554725e-03	ci left: 9.313316e-02	ci right 9.374591e-02	k: 324234	n:3470000
DOCK3   3470000 perm   6265 sec   (554 perm/sec)   p_kst 9.343919e-02   p_cons 2.190202e-05   p_joint 2.043228e-04

Joint ci ratio: 1.470999e-01	ci left: 1.890144e-04	ci right 2.192987e-04	k: 709	n:3480000
Cons ci ratio: 4.467205e-01	ci left: 1.720675e-05	ci right 2.733479e-05	k: 76	n:3480000
KS ci ratio: 6.545260e-03	ci left: 9.313463e-02	ci right 9.374650e-02	k: 325172	n:3480000
DOCK3   3480000 perm   6298 sec   (553 perm/sec)   p_kst 9.344023e-02   p_cons 2.183908e-05   p_joint 2.037356e-04

Joint ci ratio: 1.465846e-01	ci left: 1.898529e-04	ci right 2.201556e-04	k: 714	n:3490000
Cons ci ratio: 4.467205e-01	ci left: 1.715745e-05	ci right 2.725647e-05	k: 76	n:3490000
KS ci ratio: 6.536191e-03	ci left: 9.312695e-02	ci right 9.373791e-02	k: 326078	n:3490000
DOCK3   3490000 perm   6331 sec   (551 perm/sec)   p_kst 9.343209e-02   p_cons 2.177650e-05   p_joint 2.045845e-04

Joint ci ratio: 1.462781e-01	ci left: 1.901362e-04	ci right 2.204151e-04	k: 717	n:3500000
Cons ci ratio: 4.467205e-01	ci left: 1.710842e-05	ci right 2.717859e-05	k: 76	n:3500000
KS ci ratio: 6.526135e-03	ci left: 9.314583e-02	ci right 9.375598e-02	k: 327077	n:3500000
DOCK3   3500000 perm   6364 sec   (550 perm/sec)   p_kst 9.345057e-02   p_cons 2.171429e-05   p_joint 2.048571e-04

Joint ci ratio: 1.485725e-01	ci left: 1.835578e-04	ci right 2.132884e-04	k: 695	n:3510000
Cons ci ratio: 4.467205e-01	ci left: 1.705968e-05	ci right 2.710116e-05	k: 76	n:3510000
KS ci ratio: 6.516969e-03	ci left: 9.314271e-02	ci right 9.375198e-02	k: 327999	n:3510000
DOCK3   3510000 perm   6398 sec   (549 perm/sec)   p_kst 9.344701e-02   p_cons 2.165242e-05   p_joint 1.980057e-04

Joint ci ratio: 1.482533e-01	ci left: 1.838570e-04	ci right 2.135663e-04	k: 698	n:3520000
Cons ci ratio: 4.410294e-01	ci left: 1.751588e-05	ci right 2.765547e-05	k: 78	n:3520000
KS ci ratio: 6.507721e-03	ci left: 9.314273e-02	ci right 9.375112e-02	k: 328932	n:3520000
DOCK3   3520000 perm   6431 sec   (547 perm/sec)   p_kst 9.344659e-02   p_cons 2.215909e-05   p_joint 1.982955e-04

Joint ci ratio: 1.481474e-01	ci left: 1.836089e-04	ci right 2.132551e-04	k: 699	n:3530000
Cons ci ratio: 4.410295e-01	ci left: 1.746626e-05	ci right 2.757713e-05	k: 78	n:3530000
KS ci ratio: 6.499110e-03	ci left: 9.312718e-02	ci right 9.373467e-02	k: 329810	n:3530000
DOCK3   3530000 perm   6464 sec   (546 perm/sec)   p_kst 9.343059e-02   p_cons 2.209632e-05   p_joint 1.980170e-04

Joint ci ratio: 1.477258e-01	ci left: 1.841784e-04	ci right 2.138244e-04	k: 703	n:3540000
Cons ci ratio: 4.410295e-01	ci left: 1.741692e-05	ci right 2.749923e-05	k: 78	n:3540000
KS ci ratio: 6.490371e-03	ci left: 9.311596e-02	ci right 9.372256e-02	k: 330703	n:3540000
DOCK3   3540000 perm   6497 sec   (545 perm/sec)   p_kst 9.341893e-02   p_cons 2.203390e-05   p_joint 1.985876e-04

Joint ci ratio: 1.476211e-01	ci left: 1.839308e-04	ci right 2.135142e-04	k: 704	n:3550000
Cons ci ratio: 4.382643e-01	ci left: 1.761836e-05	ci right 2.773445e-05	k: 79	n:3550000
KS ci ratio: 6.481678e-03	ci left: 9.310452e-02	ci right 9.371023e-02	k: 331595	n:3550000
DOCK3   3550000 perm   6530 sec   (544 perm/sec)   p_kst 9.340704e-02   p_cons 2.225352e-05   p_joint 1.983099e-04

Joint ci ratio: 1.507549e-01	ci left: 1.755721e-04	ci right 2.044646e-04	k: 675	n:3560000
Cons ci ratio: 4.382643e-01	ci left: 1.756887e-05	ci right 2.765655e-05	k: 79	n:3560000
KS ci ratio: 6.472945e-03	ci left: 9.309511e-02	ci right 9.369993e-02	k: 332494	n:3560000
DOCK3   3560000 perm   6563 sec   (542 perm/sec)   p_kst 9.339719e-02   p_cons 2.219101e-05   p_joint 1.896067e-04

Joint ci ratio: 1.535050e-01	ci left: 1.686134e-04	ci right 1.969136e-04	k: 651	n:3570000
Cons ci ratio: 4.382644e-01	ci left: 1.751966e-05	ci right 2.757908e-05	k: 79	n:3570000
KS ci ratio: 6.464258e-03	ci left: 9.308547e-02	ci right 9.368942e-02	k: 333392	n:3570000
DOCK3   3570000 perm   6596 sec   (541 perm/sec)   p_kst 9.338711e-02   p_cons 2.212885e-05   p_joint 1.823529e-04

Joint ci ratio: 1.585727e-01	ci left: 1.571369e-04	ci right 1.844644e-04	k: 610	n:3580000
Cons ci ratio: 4.382644e-01	ci left: 1.747072e-05	ci right 2.750204e-05	k: 79	n:3580000
KS ci ratio: 6.455381e-03	ci left: 9.308174e-02	ci right 9.368484e-02	k: 334311	n:3580000
DOCK3   3580000 perm   6630 sec   (540 perm/sec)   p_kst 9.338296e-02   p_cons 2.206704e-05   p_joint 1.703911e-04

Joint ci ratio: 1.581848e-01	ci left: 1.575017e-04	ci right 1.848193e-04	k: 613	n:3590000
Cons ci ratio: 4.355506e-01	ci left: 1.766996e-05	ci right 2.773444e-05	k: 80	n:3590000
KS ci ratio: 6.446573e-03	ci left: 9.307720e-02	ci right 9.367944e-02	k: 335227	n:3590000
DOCK3   3590000 perm   6664 sec   (539 perm/sec)   p_kst 9.337799e-02   p_cons 2.228412e-05   p_joint 1.707521e-04

Joint ci ratio: 1.580561e-01	ci left: 1.573310e-04	ci right 1.845947e-04	k: 614	n:3600000
Cons ci ratio: 4.355506e-01	ci left: 1.762088e-05	ci right 2.765740e-05	k: 80	n:3600000
KS ci ratio: 6.437865e-03	ci left: 9.307103e-02	ci right 9.367241e-02	k: 336137	n:3600000
DOCK3   3600000 perm   6699 sec   (537 perm/sec)   p_kst 9.337139e-02   p_cons 2.222222e-05   p_joint 1.705556e-04

Joint ci ratio: 1.576720e-01	ci left: 1.576934e-04	ci right 1.849472e-04	k: 617	n:3610000
Cons ci ratio: 4.328866e-01	ci left: 1.781879e-05	ci right 2.788790e-05	k: 81	n:3610000
KS ci ratio: 6.429055e-03	ci left: 9.306848e-02	ci right 9.366902e-02	k: 337060	n:3610000
DOCK3   3610000 perm   6732 sec   (536 perm/sec)   p_kst 9.336842e-02   p_cons 2.243767e-05   p_joint 1.709141e-04

Joint ci ratio: 1.574175e-01	ci left: 1.577885e-04	ci right 1.850105e-04	k: 619	n:3620000
Cons ci ratio: 4.328866e-01	ci left: 1.776957e-05	ci right 2.781086e-05	k: 81	n:3620000
KS ci ratio: 6.420323e-03	ci left: 9.306484e-02	ci right 9.366454e-02	k: 337979	n:3620000
DOCK3   3620000 perm   6766 sec   (535 perm/sec)   p_kst 9.336436e-02   p_cons 2.237569e-05   p_joint 1.709945e-04

Joint ci ratio: 1.571642e-01	ci left: 1.578831e-04	ci right 1.850735e-04	k: 621	n:3630000
Cons ci ratio: 4.328866e-01	ci left: 1.772061e-05	ci right 2.773425e-05	k: 81	n:3630000
KS ci ratio: 6.411803e-03	ci left: 9.305655e-02	ci right 9.365539e-02	k: 338881	n:3630000
DOCK3   3630000 perm   6801 sec   (534 perm/sec)   p_kst 9.335565e-02   p_cons 2.231405e-05   p_joint 1.710744e-04

Joint ci ratio: 1.570380e-01	ci left: 1.577133e-04	ci right 1.848506e-04	k: 622	n:3640000
Cons ci ratio: 4.328866e-01	ci left: 1.767193e-05	ci right 2.765806e-05	k: 81	n:3640000
KS ci ratio: 6.402840e-03	ci left: 9.306092e-02	ci right 9.365895e-02	k: 339829	n:3640000
DOCK3   3640000 perm   6836 sec   (533 perm/sec)   p_kst 9.335962e-02   p_cons 2.225275e-05   p_joint 1.708791e-04

Joint ci ratio: 1.569122e-01	ci left: 1.575444e-04	ci right 1.846289e-04	k: 623	n:3650000
Cons ci ratio: 4.328867e-01	ci left: 1.762352e-05	ci right 2.758228e-05	k: 81	n:3650000
KS ci ratio: 6.394058e-03	ci left: 9.306144e-02	ci right 9.365865e-02	k: 340763	n:3650000
DOCK3   3650000 perm   6870 sec   (531 perm/sec)   p_kst 9.335973e-02   p_cons 2.219178e-05   p_joint 1.706849e-04

Joint ci ratio: 1.565363e-01	ci left: 1.579015e-04	ci right 1.849762e-04	k: 626	n:3660000
Cons ci ratio: 4.328867e-01	ci left: 1.757536e-05	ci right 2.750692e-05	k: 81	n:3660000
KS ci ratio: 6.385726e-03	ci left: 9.305105e-02	ci right 9.364741e-02	k: 341657	n:3660000
DOCK3   3660000 perm   6905 sec   (530 perm/sec)   p_kst 9.334891e-02   p_cons 2.213115e-05   p_joint 1.710383e-04

Joint ci ratio: 1.562872e-01	ci left: 1.579948e-04	ci right 1.850384e-04	k: 628	n:3670000
Cons ci ratio: 4.328867e-01	ci left: 1.752747e-05	ci right 2.743197e-05	k: 81	n:3670000
KS ci ratio: 6.376686e-03	ci left: 9.306030e-02	ci right 9.365587e-02	k: 342623	n:3670000
DOCK3   3670000 perm   6952 sec   (528 perm/sec)   p_kst 9.335777e-02   p_cons 2.207084e-05   p_joint 1.711172e-04

Joint ci ratio: 1.560393e-01	ci left: 1.580878e-04	ci right 1.851003e-04	k: 630	n:3680000
Cons ci ratio: 4.328867e-01	ci left: 1.747984e-05	ci right 2.735743e-05	k: 81	n:3680000
KS ci ratio: 6.368482e-03	ci left: 9.304834e-02	ci right 9.364307e-02	k: 343511	n:3680000
DOCK3   3680000 perm   6987 sec   (527 perm/sec)   p_kst 9.334538e-02   p_cons 2.201087e-05   p_joint 1.711957e-04

Joint ci ratio: 1.704225e-01	ci left: 1.311438e-04	ci right 1.558306e-04	k: 528	n:3690000
Cons ci ratio: 4.328867e-01	ci left: 1.743247e-05	ci right 2.728329e-05	k: 81	n:3690000
KS ci ratio: 6.359393e-03	ci left: 9.306079e-02	ci right 9.365475e-02	k: 344489	n:3690000
DOCK3   3690000 perm   7022 sec   (526 perm/sec)   p_kst 9.335745e-02   p_cons 2.195122e-05   p_joint 1.430894e-04

Joint ci ratio: 1.702617e-01	ci left: 1.310481e-04	ci right 1.556913e-04	k: 529	n:3700000
Cons ci ratio: 4.277022e-01	ci left: 1.786735e-05	ci right 2.780830e-05	k: 83	n:3700000
KS ci ratio: 6.350719e-03	ci left: 9.306320e-02	ci right 9.365636e-02	k: 345430	n:3700000
DOCK3   3700000 perm   7057 sec   (524 perm/sec)   p_kst 9.335946e-02   p_cons 2.243243e-05   p_joint 1.429730e-04

Joint ci ratio: 1.702617e-01	ci left: 1.306949e-04	ci right 1.552716e-04	k: 529	n:3710000
Cons ci ratio: 4.277022e-01	ci left: 1.781919e-05	ci right 2.773335e-05	k: 83	n:3710000
KS ci ratio: 6.341948e-03	ci left: 9.306909e-02	ci right 9.366146e-02	k: 346384	n:3710000
DOCK3   3710000 perm   7092 sec   (523 perm/sec)   p_kst 9.336496e-02   p_cons 2.237197e-05   p_joint 1.425876e-04

Joint ci ratio: 1.694642e-01	ci left: 1.316305e-04	ci right 1.562554e-04	k: 534	n:3720000
Cons ci ratio: 4.277022e-01	ci left: 1.777128e-05	ci right 2.765879e-05	k: 83	n:3720000
KS ci ratio: 6.333344e-03	ci left: 9.307146e-02	ci right 9.366304e-02	k: 347325	n:3720000
DOCK3   3720000 perm   7128 sec   (522 perm/sec)   p_kst 9.336694e-02   p_cons 2.231183e-05   p_joint 1.435484e-04

Joint ci ratio: 1.691483e-01	ci left: 1.317911e-04	ci right 1.563954e-04	k: 536	n:3730000
Cons ci ratio: 4.277022e-01	ci left: 1.772364e-05	ci right 2.758464e-05	k: 83	n:3730000
KS ci ratio: 6.325486e-03	ci left: 9.305481e-02	ci right 9.364555e-02	k: 348195	n:3730000
DOCK3   3730000 perm   7164 sec   (521 perm/sec)   p_kst 9.334987e-02   p_cons 2.225201e-05   p_joint 1.436997e-04

Joint ci ratio: 1.689910e-01	ci left: 1.316948e-04	ci right 1.562559e-04	k: 537	n:3740000
Cons ci ratio: 4.277022e-01	ci left: 1.767625e-05	ci right 2.751089e-05	k: 83	n:3740000
KS ci ratio: 6.317259e-03	ci left: 9.304893e-02	ci right 9.363886e-02	k: 349105	n:3740000
DOCK3   3740000 perm   7199 sec   (519 perm/sec)   p_kst 9.334358e-02   p_cons 2.219251e-05   p_joint 1.435829e-04

Joint ci ratio: 1.688342e-01	ci left: 1.315990e-04	ci right 1.561171e-04	k: 538	n:3750000
Cons ci ratio: 4.226996e-01	ci left: 1.810537e-05	ci right 2.802761e-05	k: 85	n:3750000
KS ci ratio: 6.309023e-03	ci left: 9.304415e-02	ci right 9.363328e-02	k: 350019	n:3750000
DOCK3   3750000 perm   7236 sec   (518 perm/sec)   p_kst 9.333840e-02   p_cons 2.266667e-05   p_joint 1.434667e-04

Joint ci ratio: 1.686778e-01	ci left: 1.315037e-04	ci right 1.559791e-04	k: 539	n:3760000
Cons ci ratio: 4.226996e-01	ci left: 1.805721e-05	ci right 2.795307e-05	k: 85	n:3760000
KS ci ratio: 6.301038e-03	ci left: 9.303355e-02	ci right 9.362186e-02	k: 350911	n:3760000
DOCK3   3760000 perm   7272 sec   (517 perm/sec)   p_kst 9.332739e-02   p_cons 2.260638e-05   p_joint 1.433511e-04

Joint ci ratio: 1.686778e-01	ci left: 1.311549e-04	ci right 1.555654e-04	k: 539	n:3770000
Cons ci ratio: 4.202632e-01	ci left: 1.824643e-05	ci right 2.817215e-05	k: 86	n:3770000
KS ci ratio: 6.292807e-03	ci left: 9.303042e-02	ci right 9.361795e-02	k: 351831	n:3770000
DOCK3   3770000 perm   7306 sec   (516 perm/sec)   p_kst 9.332387e-02   p_cons 2.281167e-05   p_joint 1.429708e-04

Joint ci ratio: 1.686779e-01	ci left: 1.308079e-04	ci right 1.551538e-04	k: 539	n:3780000
Cons ci ratio: 4.202632e-01	ci left: 1.819816e-05	ci right 2.809762e-05	k: 86	n:3780000
KS ci ratio: 6.284794e-03	ci left: 9.302229e-02	ci right 9.360902e-02	k: 352732	n:3780000
DOCK3   3780000 perm   7341 sec   (515 perm/sec)   p_kst 9.331534e-02   p_cons 2.275132e-05   p_joint 1.425926e-04

Joint ci ratio: 1.683664e-01	ci left: 1.309683e-04	ci right 1.552944e-04	k: 541	n:3790000
Cons ci ratio: 4.202632e-01	ci left: 1.815014e-05	ci right 2.802349e-05	k: 86	n:3790000
KS ci ratio: 6.276597e-03	ci left: 9.302001e-02	ci right 9.360595e-02	k: 353655	n:3790000
DOCK3   3790000 perm   7376 sec   (514 perm/sec)   p_kst 9.331266e-02   p_cons 2.269129e-05   p_joint 1.427441e-04

Joint ci ratio: 1.682113e-01	ci left: 1.308757e-04	ci right 1.551599e-04	k: 542	n:3800000
Cons ci ratio: 4.178685e-01	ci left: 1.833779e-05	ci right 2.824050e-05	k: 87	n:3800000
KS ci ratio: 6.268275e-03	ci left: 9.302193e-02	ci right 9.360711e-02	k: 354594	n:3800000
DOCK3   3800000 perm   7412 sec   (513 perm/sec)   p_kst 9.331421e-02   p_cons 2.289474e-05   p_joint 1.426316e-04

Joint ci ratio: 1.680566e-01	ci left: 1.307836e-04	ci right 1.550262e-04	k: 543	n:3810000
Cons ci ratio: 4.178685e-01	ci left: 1.828965e-05	ci right 2.816638e-05	k: 87	n:3810000
KS ci ratio: 6.260521e-03	ci left: 9.300944e-02	ci right 9.359381e-02	k: 355478	n:3810000
DOCK3   3810000 perm   7448 sec   (512 perm/sec)   p_kst 9.330131e-02   p_cons 2.283465e-05   p_joint 1.425197e-04

Joint ci ratio: 1.679024e-01	ci left: 1.306920e-04	ci right 1.548931e-04	k: 544	n:3820000
Cons ci ratio: 4.155143e-01	ci left: 1.847611e-05	ci right 2.838172e-05	k: 88	n:3820000
KS ci ratio: 6.252350e-03	ci left: 9.300903e-02	ci right 9.359263e-02	k: 356408	n:3820000
DOCK3   3820000 perm   7484 sec   (510 perm/sec)   p_kst 9.330052e-02   p_cons 2.303665e-05   p_joint 1.424084e-04

Joint ci ratio: 1.674421e-01	ci left: 1.311012e-04	ci right 1.553048e-04	k: 547	n:3830000
Cons ci ratio: 4.155143e-01	ci left: 1.842787e-05	ci right 2.830762e-05	k: 88	n:3830000
KS ci ratio: 6.244424e-03	ci left: 9.300289e-02	ci right 9.358571e-02	k: 357316	n:3830000
DOCK3   3830000 perm   7520 sec   (509 perm/sec)   p_kst 9.329399e-02   p_cons 2.297650e-05   p_joint 1.428198e-04

Joint ci ratio: 1.674421e-01	ci left: 1.307598e-04	ci right 1.549004e-04	k: 547	n:3840000
Cons ci ratio: 4.155143e-01	ci left: 1.837988e-05	ci right 2.823390e-05	k: 88	n:3840000
KS ci ratio: 6.236690e-03	ci left: 9.299237e-02	ci right 9.357439e-02	k: 358207	n:3840000
DOCK3   3840000 perm   7556 sec   (508 perm/sec)   p_kst 9.328307e-02   p_cons 2.291667e-05   p_joint 1.424479e-04

Joint ci ratio: 1.669856e-01	ci left: 1.311668e-04	ci right 1.553099e-04	k: 550	n:3850000
Cons ci ratio: 4.155143e-01	ci left: 1.833214e-05	ci right 2.816056e-05	k: 88	n:3850000
KS ci ratio: 6.228220e-03	ci left: 9.300264e-02	ci right 9.358394e-02	k: 359178	n:3850000
DOCK3   3850000 perm   7592 sec   (507 perm/sec)   p_kst 9.329299e-02   p_cons 2.285714e-05   p_joint 1.428571e-04

Joint ci ratio: 1.663827e-01	ci left: 1.318200e-04	ci right 1.559870e-04	k: 554	n:3860000
Cons ci ratio: 4.131994e-01	ci left: 1.851670e-05	ci right 2.837354e-05	k: 89	n:3860000
KS ci ratio: 6.220061e-03	ci left: 9.300537e-02	ci right 9.358592e-02	k: 360120	n:3860000
DOCK3   3860000 perm   7627 sec   (506 perm/sec)   p_kst 9.329534e-02   p_cons 2.305699e-05   p_joint 1.435233e-04

Joint ci ratio: 2.057370e-01	ci left: 8.415158e-05	ci right 1.036895e-04	k: 362	n:3870000
Cons ci ratio: 4.131994e-01	ci left: 1.846885e-05	ci right 2.830022e-05	k: 89	n:3870000
KS ci ratio: 6.072868e-03	ci left: 9.690452e-02	ci right 9.749505e-02	k: 376162	n:3870000
DOCK3   3870000 perm   7664 sec   (505 perm/sec)   p_kst 9.719948e-02   p_cons 2.299742e-05   p_joint 9.354005e-05

Joint ci ratio: 2.051725e-01	ci left: 8.442364e-05	ci right 1.039642e-04	k: 364	n:3880000
Cons ci ratio: 4.131994e-01	ci left: 1.842125e-05	ci right 2.822729e-05	k: 89	n:3880000
KS ci ratio: 6.065464e-03	ci left: 9.689255e-02	ci right 9.748228e-02	k: 377086	n:3880000
DOCK3   3880000 perm   7700 sec   (504 perm/sec)   p_kst 9.718711e-02   p_cons 2.293814e-05   p_joint 9.381443e-05

Joint ci ratio: 2.048920e-01	ci left: 8.445049e-05	ci right 1.039672e-04	k: 365	n:3890000
Cons ci ratio: 4.131994e-01	ci left: 1.837390e-05	ci right 2.815472e-05	k: 89	n:3890000
KS ci ratio: 6.057263e-03	ci left: 9.690451e-02	ci right 9.749352e-02	k: 378103	n:3890000
DOCK3   3890000 perm   7737 sec   (503 perm/sec)   p_kst 9.719871e-02   p_cons 2.287918e-05   p_joint 9.383033e-05

Joint ci ratio: 2.043345e-01	ci left: 8.472050e-05	ci right 1.042396e-04	k: 367	n:3900000
Cons ci ratio: 4.109228e-01	ci left: 1.855661e-05	ci right 2.836538e-05	k: 90	n:3900000
KS ci ratio: 6.048891e-03	ci left: 9.692230e-02	ci right 9.751060e-02	k: 379143	n:3900000
DOCK3   3900000 perm   7774 sec   (502 perm/sec)   p_kst 9.721615e-02   p_cons 2.307692e-05   p_joint 9.410256e-05

Joint ci ratio: 2.043345e-01	ci left: 8.450382e-05	ci right 1.039730e-04	k: 367	n:3910000
Cons ci ratio: 4.086834e-01	ci left: 1.873854e-05	ci right 2.857482e-05	k: 91	n:3910000
KS ci ratio: 6.041267e-03	ci left: 9.691932e-02	ci right 9.750685e-02	k: 380102	n:3910000
DOCK3   3910000 perm   7811 sec   (501 perm/sec)   p_kst 9.721279e-02   p_cons 2.327366e-05   p_joint 9.386189e-05

Joint ci ratio: 2.040574e-01	ci left: 8.453031e-05	ci right 1.039759e-04	k: 368	n:3920000
Cons ci ratio: 4.086834e-01	ci left: 1.869073e-05	ci right 2.850192e-05	k: 91	n:3920000
KS ci ratio: 6.033619e-03	ci left: 9.691788e-02	ci right 9.750466e-02	k: 381067	n:3920000
DOCK3   3920000 perm   7847 sec   (500 perm/sec)   p_kst 9.721097e-02   p_cons 2.321429e-05   p_joint 9.387755e-05

Joint ci ratio: 2.040574e-01	ci left: 8.431522e-05	ci right 1.037114e-04	k: 368	n:3930000
Cons ci ratio: 4.086834e-01	ci left: 1.864318e-05	ci right 2.842940e-05	k: 91	n:3930000
KS ci ratio: 6.026034e-03	ci left: 9.691543e-02	ci right 9.750145e-02	k: 382028	n:3930000
DOCK3   3930000 perm   7885 sec   (498 perm/sec)   p_kst 9.720814e-02   p_cons 2.315522e-05   p_joint 9.363868e-05

Joint ci ratio: 2.037815e-01	ci left: 8.434207e-05	ci right 1.037149e-04	k: 369	n:3940000
Cons ci ratio: 4.086834e-01	ci left: 1.859586e-05	ci right 2.835724e-05	k: 91	n:3940000
KS ci ratio: 6.018035e-03	ci left: 9.692592e-02	ci right 9.751122e-02	k: 383040	n:3940000
DOCK3   3940000 perm   7922 sec   (497 perm/sec)   p_kst 9.721827e-02   p_cons 2.309645e-05   p_joint 9.365482e-05

Joint ci ratio: 2.037815e-01	ci left: 8.412854e-05	ci right 1.034523e-04	k: 369	n:3950000
Cons ci ratio: 4.086834e-01	ci left: 1.854878e-05	ci right 2.828545e-05	k: 91	n:3950000
KS ci ratio: 6.010128e-03	ci left: 9.693458e-02	ci right 9.751917e-02	k: 384045	n:3950000
DOCK3   3950000 perm   7958 sec   (496 perm/sec)   p_kst 9.722658e-02   p_cons 2.303797e-05   p_joint 9.341772e-05

Joint ci ratio: 2.037815e-01	ci left: 8.391609e-05	ci right 1.031911e-04	k: 369	n:3960000
Cons ci ratio: 4.086835e-01	ci left: 1.850194e-05	ci right 2.821403e-05	k: 91	n:3960000
KS ci ratio: 6.002554e-03	ci left: 9.693438e-02	ci right 9.751823e-02	k: 385015	n:3960000
DOCK3   3960000 perm   7995 sec   (495 perm/sec)   p_kst 9.722601e-02   p_cons 2.297980e-05   p_joint 9.318182e-05

Joint ci ratio: 2.037816e-01	ci left: 8.370472e-05	ci right 1.029311e-04	k: 369	n:3970000
Cons ci ratio: 4.086835e-01	ci left: 1.845533e-05	ci right 2.814296e-05	k: 91	n:3970000
KS ci ratio: 5.994639e-03	ci left: 9.694500e-02	ci right 9.752814e-02	k: 386028	n:3970000
DOCK3   3970000 perm   8032 sec   (494 perm/sec)   p_kst 9.723627e-02   p_cons 2.292191e-05   p_joint 9.294710e-05

Joint ci ratio: 2.037816e-01	ci left: 8.349440e-05	ci right 1.026725e-04	k: 369	n:3980000
Cons ci ratio: 4.086835e-01	ci left: 1.840896e-05	ci right 2.807225e-05	k: 91	n:3980000
KS ci ratio: 5.987175e-03	ci left: 9.694326e-02	ci right 9.752566e-02	k: 386992	n:3980000
DOCK3   3980000 perm   8069 sec   (493 perm/sec)   p_kst 9.723417e-02   p_cons 2.286432e-05   p_joint 9.271357e-05

Joint ci ratio: 2.037816e-01	ci left: 8.328514e-05	ci right 1.024152e-04	k: 369	n:3990000
Cons ci ratio: 4.086835e-01	ci left: 1.836283e-05	ci right 2.800189e-05	k: 91	n:3990000
KS ci ratio: 5.980004e-03	ci left: 9.693378e-02	ci right 9.751542e-02	k: 387925	n:3990000
DOCK3   3990000 perm   8108 sec   (492 perm/sec)   p_kst 9.722431e-02   p_cons 2.280702e-05   p_joint 9.248120e-05

Joint ci ratio: 2.035068e-01	ci left: 8.331418e-05	ci right 1.024219e-04	k: 370	n:4000000
Cons ci ratio: 4.064803e-01	ci left: 1.854129e-05	ci right 2.820738e-05	k: 92	n:4000000
KS ci ratio: 5.972577e-03	ci left: 9.693259e-02	ci right 9.751350e-02	k: 388891	n:4000000
DOCK3   4000000 perm   8145 sec   (491 perm/sec)   p_kst 9.722275e-02   p_cons 2.300000e-05   p_joint 9.250000e-05

Joint ci ratio: 2.035068e-01	ci left: 8.310642e-05	ci right 1.021665e-04	k: 370	n:4010000
Cons ci ratio: 4.064803e-01	ci left: 1.849505e-05	ci right 2.813704e-05	k: 92	n:4010000
KS ci ratio: 5.965119e-03	ci left: 9.693314e-02	ci right 9.751333e-02	k: 389864	n:4010000
DOCK3   4010000 perm   8183 sec   (490 perm/sec)   p_kst 9.722294e-02   p_cons 2.294264e-05   p_joint 9.226933e-05

Joint ci ratio: 2.035068e-01	ci left: 8.289968e-05	ci right 1.019123e-04	k: 370	n:4020000
Cons ci ratio: 4.064803e-01	ci left: 1.844904e-05	ci right 2.806705e-05	k: 92	n:4020000
KS ci ratio: 5.957545e-03	ci left: 9.693792e-02	ci right 9.751739e-02	k: 390854	n:4020000
DOCK3   4020000 perm   8220 sec   (489 perm/sec)   p_kst 9.722736e-02   p_cons 2.288557e-05   p_joint 9.203980e-05

Joint ci ratio: 2.035069e-01	ci left: 8.269398e-05	ci right 1.016595e-04	k: 370	n:4030000
Cons ci ratio: 4.064803e-01	ci left: 1.840326e-05	ci right 2.799740e-05	k: 92	n:4030000
KS ci ratio: 5.949798e-03	ci left: 9.694861e-02	ci right 9.752740e-02	k: 391868	n:4030000
DOCK3   4030000 perm   8258 sec   (488 perm/sec)   p_kst 9.723772e-02   p_cons 2.282878e-05   p_joint 9.181141e-05

Joint ci ratio: 2.032331e-01	ci left: 8.272421e-05	ci right 1.016679e-04	k: 371	n:4040000
Cons ci ratio: 4.043124e-01	ci left: 1.857999e-05	ci right 2.820074e-05	k: 93	n:4040000
KS ci ratio: 5.942693e-03	ci left: 9.694122e-02	ci right 9.751926e-02	k: 392809	n:4040000
DOCK3   4040000 perm   8296 sec   (487 perm/sec)   p_kst 9.722995e-02   p_cons 2.301980e-05   p_joint 9.183168e-05

Joint ci ratio: 2.029605e-01	ci left: 8.275431e-05	ci right 1.016764e-04	k: 372	n:4050000
Cons ci ratio: 4.021787e-01	ci left: 1.875598e-05	ci right 2.840294e-05	k: 94	n:4050000
KS ci ratio: 5.935162e-03	ci left: 9.694717e-02	ci right 9.752452e-02	k: 393804	n:4050000
DOCK3   4050000 perm   8334 sec   (486 perm/sec)   p_kst 9.723556e-02   p_cons 2.320988e-05   p_joint 9.185185e-05

Joint ci ratio: 2.024186e-01	ci left: 8.301809e-05	ci right 1.019435e-04	k: 374	n:4060000
Cons ci ratio: 4.021788e-01	ci left: 1.870979e-05	ci right 2.833298e-05	k: 94	n:4060000
KS ci ratio: 5.928009e-03	ci left: 9.694276e-02	ci right 9.751939e-02	k: 394757	n:4060000
DOCK3   4060000 perm   8372 sec   (485 perm/sec)   p_kst 9.723079e-02   p_cons 2.315271e-05   p_joint 9.211823e-05

Joint ci ratio: 2.024186e-01	ci left: 8.281411e-05	ci right 1.016930e-04	k: 374	n:4070000
Cons ci ratio: 4.000786e-01	ci left: 1.888473e-05	ci right 2.853373e-05	k: 95	n:4070000
KS ci ratio: 5.921172e-03	ci left: 9.692979e-02	ci right 9.750567e-02	k: 395675	n:4070000
DOCK3   4070000 perm   8409 sec   (484 perm/sec)   p_kst 9.721744e-02   p_cons 2.334152e-05   p_joint 9.189189e-05

Joint ci ratio: 2.024186e-01	ci left: 8.261114e-05	ci right 1.014438e-04	k: 374	n:4080000
Cons ci ratio: 4.000786e-01	ci left: 1.883844e-05	ci right 2.846379e-05	k: 95	n:4080000
KS ci ratio: 5.914243e-03	ci left: 9.692031e-02	ci right 9.749546e-02	k: 396607	n:4080000
DOCK3   4080000 perm   8448 sec   (483 perm/sec)   p_kst 9.720760e-02   p_cons 2.328431e-05   p_joint 9.166667e-05

Joint ci ratio: 2.024186e-01	ci left: 8.240915e-05	ci right 1.011957e-04	k: 374	n:4090000
Cons ci ratio: 4.000786e-01	ci left: 1.879238e-05	ci right 2.839420e-05	k: 95	n:4090000
KS ci ratio: 5.907404e-03	ci left: 9.690892e-02	ci right 9.748333e-02	k: 397531	n:4090000
DOCK3   4090000 perm   8485 sec   (482 perm/sec)   p_kst 9.719584e-02   p_cons 2.322738e-05   p_joint 9.144254e-05

Joint ci ratio: 2.021493e-01	ci left: 8.243971e-05	ci right 1.012052e-04	k: 375	n:4100000
Cons ci ratio: 4.000786e-01	ci left: 1.874654e-05	ci right 2.832494e-05	k: 95	n:4100000
KS ci ratio: 5.900589e-03	ci left: 9.689759e-02	ci right 9.747127e-02	k: 398455	n:4100000
DOCK3   4100000 perm   8524 sec   (481 perm/sec)   p_kst 9.718415e-02   p_cons 2.317073e-05   p_joint 9.146341e-05

Joint ci ratio: 2.021493e-01	ci left: 8.223912e-05	ci right 1.009589e-04	k: 375	n:4110000
Cons ci ratio: 4.000786e-01	ci left: 1.870093e-05	ci right 2.825603e-05	k: 95	n:4110000
KS ci ratio: 5.893176e-03	ci left: 9.690478e-02	ci right 9.747778e-02	k: 399455	n:4110000
DOCK3   4110000 perm   8562 sec   (480 perm/sec)   p_kst 9.719100e-02   p_cons 2.311436e-05   p_joint 9.124088e-05

Joint ci ratio: 2.018810e-01	ci left: 8.226995e-05	ci right 1.009689e-04	k: 376	n:4120000
Cons ci ratio: 4.000786e-01	ci left: 1.865554e-05	ci right 2.818745e-05	k: 95	n:4120000
KS ci ratio: 5.885913e-03	ci left: 9.690830e-02	ci right 9.748061e-02	k: 400440	n:4120000
DOCK3   4120000 perm   8600 sec   (479 perm/sec)   p_kst 9.719417e-02   p_cons 2.305825e-05   p_joint 9.126214e-05

Joint ci ratio: 2.013476e-01	ci left: 8.253057e-05	ci right 1.012331e-04	k: 378	n:4130000
Cons ci ratio: 4.000786e-01	ci left: 1.861037e-05	ci right 2.811920e-05	k: 95	n:4130000
KS ci ratio: 5.879075e-03	ci left: 9.689996e-02	ci right 9.747155e-02	k: 401376	n:4130000
DOCK3   4130000 perm   8638 sec   (478 perm/sec)   p_kst 9.718547e-02   p_cons 2.300242e-05   p_joint 9.152542e-05

Joint ci ratio: 2.010825e-01	ci left: 8.256060e-05	ci right 1.012422e-04	k: 379	n:4140000
Cons ci ratio: 4.000786e-01	ci left: 1.856542e-05	ci right 2.805127e-05	k: 95	n:4140000
KS ci ratio: 5.871589e-03	ci left: 9.691168e-02	ci right 9.748261e-02	k: 402395	n:4140000
DOCK3   4140000 perm   8676 sec   (477 perm/sec)   p_kst 9.719686e-02   p_cons 2.294686e-05   p_joint 9.154589e-05

Joint ci ratio: 2.005554e-01	ci left: 8.281935e-05	ci right 1.015044e-04	k: 381	n:4150000
Cons ci ratio: 4.000786e-01	ci left: 1.852068e-05	ci right 2.798368e-05	k: 95	n:4150000
KS ci ratio: 5.864776e-03	ci left: 9.690409e-02	ci right 9.747431e-02	k: 403334	n:4150000
DOCK3   4150000 perm   8715 sec   (476 perm/sec)   p_kst 9.718892e-02   p_cons 2.289157e-05   p_joint 9.180723e-05

Joint ci ratio: 2.024188e-01	ci left: 8.102246e-05	ci right 9.949294e-05	k: 374	n:4160000
Cons ci ratio: 4.000787e-01	ci left: 1.847616e-05	ci right 2.791641e-05	k: 95	n:4160000
KS ci ratio: 5.857618e-03	ci left: 9.690758e-02	ci right 9.747712e-02	k: 404319	n:4160000
DOCK3   4160000 perm   8753 sec   (475 perm/sec)   p_kst 9.719207e-02   p_cons 2.283654e-05   p_joint 8.990385e-05

Joint ci ratio: 2.024188e-01	ci left: 8.082816e-05	ci right 9.925435e-05	k: 374	n:4170000
Cons ci ratio: 4.000787e-01	ci left: 1.843185e-05	ci right 2.784947e-05	k: 95	n:4170000
KS ci ratio: 5.850638e-03	ci left: 9.690650e-02	ci right 9.747536e-02	k: 405285	n:4170000
DOCK3   4170000 perm   8792 sec   (474 perm/sec)   p_kst 9.719065e-02   p_cons 2.278177e-05   p_joint 8.968825e-05

Joint ci ratio: 2.043351e-01	ci left: 7.904542e-05	ci right 9.725711e-05	k: 367	n:4180000
Cons ci ratio: 3.980110e-01	ci left: 1.860298e-05	ci right 2.804596e-05	k: 96	n:4180000
KS ci ratio: 5.843475e-03	ci left: 9.691164e-02	ci right 9.747983e-02	k: 406277	n:4180000
DOCK3   4180000 perm   8831 sec   (473 perm/sec)   p_kst 9.719545e-02   p_cons 2.296651e-05   p_joint 8.779904e-05

Joint ci ratio: 2.043351e-01	ci left: 7.885676e-05	ci right 9.702499e-05	k: 367	n:4190000
Cons ci ratio: 3.980110e-01	ci left: 1.855858e-05	ci right 2.797903e-05	k: 96	n:4190000
KS ci ratio: 5.836505e-03	ci left: 9.691175e-02	ci right 9.747926e-02	k: 407248	n:4190000
DOCK3   4190000 perm   8869 sec   (472 perm/sec)   p_kst 9.719523e-02   p_cons 2.291169e-05   p_joint 8.758950e-05

Joint ci ratio: 2.035072e-01	ci left: 7.934682e-05	ci right 9.754469e-05	k: 370	n:4200000
Cons ci ratio: 3.939701e-01	ci left: 1.894317e-05	ci right 2.843579e-05	k: 98	n:4200000
KS ci ratio: 5.829640e-03	ci left: 9.690948e-02	ci right 9.747631e-02	k: 408209	n:4200000
DOCK3   4200000 perm   8909 sec   (471 perm/sec)   p_kst 9.719262e-02   p_cons 2.333333e-05   p_joint 8.809524e-05

Joint ci ratio: 2.029609e-01	ci left: 7.960924e-05	ci right 9.781219e-05	k: 372	n:4210000
Cons ci ratio: 3.919953e-01	ci left: 1.911223e-05	ci right 2.862913e-05	k: 99	n:4210000
KS ci ratio: 5.822680e-03	ci left: 9.691079e-02	ci right 9.747694e-02	k: 409185	n:4210000
DOCK3   4210000 perm   8948 sec   (470 perm/sec)   p_kst 9.719359e-02   p_cons 2.351544e-05   p_joint 8.836105e-05

Joint ci ratio: 2.104279e-01	ci left: 7.357821e-05	ci right 9.110096e-05	k: 346	n:4220000
Cons ci ratio: 3.900499e-01	ci left: 1.928061e-05	ci right 2.882144e-05	k: 100	n:4220000
KS ci ratio: 5.815713e-03	ci left: 9.691303e-02	ci right 9.747852e-02	k: 410165	n:4220000
DOCK3   4220000 perm   8987 sec   (470 perm/sec)   p_kst 9.719550e-02   p_cons 2.369668e-05   p_joint 8.199052e-05

Joint ci ratio: 2.101254e-01	ci left: 7.362822e-05	ci right 9.113443e-05	k: 347	n:4230000
Cons ci ratio: 3.900499e-01	ci left: 1.923503e-05	ci right 2.875331e-05	k: 100	n:4230000
KS ci ratio: 5.808874e-03	ci left: 9.691219e-02	ci right 9.747701e-02	k: 411132	n:4230000
DOCK3   4230000 perm   9027 sec   (469 perm/sec)   p_kst 9.719433e-02   p_cons 2.364066e-05   p_joint 8.203310e-05

Joint ci ratio: 2.098241e-01	ci left: 7.367802e-05	ci right 9.116772e-05	k: 348	n:4240000
Cons ci ratio: 3.900499e-01	ci left: 1.918966e-05	ci right 2.868549e-05	k: 100	n:4240000
KS ci ratio: 5.802417e-03	ci left: 9.690053e-02	ci right 9.746465e-02	k: 412053	n:4240000
DOCK3   4240000 perm   9067 sec   (468 perm/sec)   p_kst 9.718231e-02   p_cons 2.358491e-05   p_joint 8.207547e-05

Joint ci ratio: 2.092255e-01	ci left: 7.395056e-05	ci right 9.144845e-05	k: 350	n:4250000
Cons ci ratio: 3.900499e-01	ci left: 1.914451e-05	ci right 2.861800e-05	k: 100	n:4250000
KS ci ratio: 5.795772e-03	ci left: 9.689526e-02	ci right 9.745870e-02	k: 413001	n:4250000
DOCK3   4250000 perm   9107 sec   (467 perm/sec)   p_kst 9.717671e-02   p_cons 2.352941e-05   p_joint 8.235294e-05

Joint ci ratio: 2.083370e-01	ci left: 7.444437e-05	ci right 9.197478e-05	k: 353	n:4260000
Cons ci ratio: 3.900499e-01	ci left: 1.909957e-05	ci right 2.855082e-05	k: 100	n:4260000
KS ci ratio: 5.788692e-03	ci left: 9.690385e-02	ci right 9.746665e-02	k: 414008	n:4260000
DOCK3   4260000 perm   9146 sec   (466 perm/sec)   p_kst 9.718498e-02   p_cons 2.347418e-05   p_joint 8.286385e-05

Joint ci ratio: 2.077509e-01	ci left: 7.471401e-05	ci right 9.225213e-05	k: 355	n:4270000
Cons ci ratio: 3.900499e-01	ci left: 1.905484e-05	ci right 2.848395e-05	k: 100	n:4270000
KS ci ratio: 5.781855e-03	ci left: 9.690585e-02	ci right 9.746800e-02	k: 414987	n:4270000
DOCK3   4270000 perm   9186 sec   (465 perm/sec)   p_kst 9.718665e-02   p_cons 2.341920e-05   p_joint 8.313817e-05

Joint ci ratio: 2.077509e-01	ci left: 7.453945e-05	ci right 9.203659e-05	k: 355	n:4280000
Cons ci ratio: 3.900499e-01	ci left: 1.901032e-05	ci right 2.841740e-05	k: 100	n:4280000
KS ci ratio: 5.775111e-03	ci left: 9.690574e-02	ci right 9.746723e-02	k: 415957	n:4280000
DOCK3   4280000 perm   9227 sec   (464 perm/sec)   p_kst 9.718621e-02   p_cons 2.336449e-05   p_joint 8.294393e-05

Joint ci ratio: 2.077509e-01	ci left: 7.436570e-05	ci right 9.182205e-05	k: 355	n:4290000
Cons ci ratio: 3.881332e-01	ci left: 1.917630e-05	ci right 2.860696e-05	k: 101	n:4290000
KS ci ratio: 5.768222e-03	ci left: 9.691076e-02	ci right 9.747160e-02	k: 416949	n:4290000
DOCK3   4290000 perm   9267 sec   (463 perm/sec)   p_kst 9.719091e-02   p_cons 2.354312e-05   p_joint 8.275058e-05

Joint ci ratio: 2.068810e-01	ci left: 7.485421e-05	ci right 9.234235e-05	k: 358	n:4300000
Cons ci ratio: 3.881332e-01	ci left: 1.913170e-05	ci right 2.854043e-05	k: 101	n:4300000
KS ci ratio: 5.761518e-03	ci left: 9.691087e-02	ci right 9.747106e-02	k: 417920	n:4300000
DOCK3   4300000 perm   9307 sec   (462 perm/sec)   p_kst 9.719070e-02   p_cons 2.348837e-05   p_joint 8.325581e-05

Joint ci ratio: 2.065935e-01	ci left: 7.490054e-05	ci right 9.237211e-05	k: 359	n:4310000
Cons ci ratio: 3.881332e-01	ci left: 1.908732e-05	ci right 2.847421e-05	k: 101	n:4310000
KS ci ratio: 5.754936e-03	ci left: 9.690798e-02	ci right 9.746751e-02	k: 418878	n:4310000
DOCK3   4310000 perm   9346 sec   (461 perm/sec)   p_kst 9.718747e-02   p_cons 2.343387e-05   p_joint 8.329466e-05

Joint ci ratio: 2.063071e-01	ci left: 7.494668e-05	ci right 9.240172e-05	k: 360	n:4320000
Cons ci ratio: 3.881332e-01	ci left: 1.904313e-05	ci right 2.840830e-05	k: 101	n:4320000
KS ci ratio: 5.748278e-03	ci left: 9.690810e-02	ci right 9.746698e-02	k: 419849	n:4320000
DOCK3   4320000 perm   9387 sec   (460 perm/sec)   p_kst 9.718727e-02   p_cons 2.337963e-05   p_joint 8.333333e-05

Joint ci ratio: 2.063072e-01	ci left: 7.477359e-05	ci right 9.218832e-05	k: 360	n:4330000
Cons ci ratio: 3.862444e-01	ci left: 1.920762e-05	ci right 2.859601e-05	k: 102	n:4330000
KS ci ratio: 5.741469e-03	ci left: 9.691352e-02	ci right 9.747177e-02	k: 420843	n:4330000
DOCK3   4330000 perm   9427 sec   (459 perm/sec)   p_kst 9.719238e-02   p_cons 2.355658e-05   p_joint 8.314088e-05

Joint ci ratio: 2.057380e-01	ci left: 7.503836e-05	ci right 9.246047e-05	k: 362	n:4340000
Cons ci ratio: 3.862444e-01	ci left: 1.916336e-05	ci right 2.853012e-05	k: 102	n:4340000
KS ci ratio: 5.734707e-03	ci left: 9.691823e-02	ci right 9.747585e-02	k: 421834	n:4340000
DOCK3   4340000 perm   9468 sec   (458 perm/sec)   p_kst 9.719677e-02   p_cons 2.350230e-05   p_joint 8.341014e-05

Joint ci ratio: 2.051735e-01	ci left: 7.530197e-05	ci right 9.273131e-05	k: 364	n:4350000
Cons ci ratio: 3.862445e-01	ci left: 1.911931e-05	ci right 2.846454e-05	k: 102	n:4350000
KS ci ratio: 5.728036e-03	ci left: 9.692086e-02	ci right 9.747784e-02	k: 422816	n:4350000
DOCK3   4350000 perm   9508 sec   (458 perm/sec)   p_kst 9.719908e-02   p_cons 2.344828e-05   p_joint 8.367816e-05

Joint ci ratio: 2.051736e-01	ci left: 7.512926e-05	ci right 9.251863e-05	k: 364	n:4360000
Cons ci ratio: 3.862445e-01	ci left: 1.907545e-05	ci right 2.839925e-05	k: 102	n:4360000
KS ci ratio: 5.721770e-03	ci left: 9.691179e-02	ci right 9.746810e-02	k: 423747	n:4360000
DOCK3   4360000 perm   9549 sec   (457 perm/sec)   p_kst 9.718968e-02   p_cons 2.339450e-05   p_joint 8.348624e-05

Joint ci ratio: 2.048931e-01	ci left: 7.517442e-05	ci right 9.254748e-05	k: 365	n:4370000
Cons ci ratio: 3.807394e-01	ci left: 1.965212e-05	ci right 2.908663e-05	k: 105	n:4370000
KS ci ratio: 5.714824e-03	ci left: 9.692424e-02	ci right 9.747995e-02	k: 424772	n:4370000
DOCK3   4370000 perm   9590 sec   (456 perm/sec)   p_kst 9.720183e-02   p_cons 2.402746e-05   p_joint 8.352403e-05

Joint ci ratio: 2.048931e-01	ci left: 7.500279e-05	ci right 9.233618e-05	k: 365	n:4380000
Cons ci ratio: 3.807394e-01	ci left: 1.960725e-05	ci right 2.902022e-05	k: 105	n:4380000
KS ci ratio: 5.708319e-03	ci left: 9.692387e-02	ci right 9.747894e-02	k: 425741	n:4380000
DOCK3   4380000 perm   9630 sec   (455 perm/sec)   p_kst 9.720114e-02   p_cons 2.397260e-05   p_joint 8.333333e-05

Joint ci ratio: 2.046138e-01	ci left: 7.504806e-05	ci right 9.236530e-05	k: 366	n:4390000
Cons ci ratio: 3.807394e-01	ci left: 1.956259e-05	ci right 2.895412e-05	k: 105	n:4390000
KS ci ratio: 5.701866e-03	ci left: 9.692259e-02	ci right 9.747703e-02	k: 426706	n:4390000
DOCK3   4390000 perm   9672 sec   (454 perm/sec)   p_kst 9.719954e-02   p_cons 2.391800e-05   p_joint 8.337130e-05

Joint ci ratio: 2.043356e-01	ci left: 7.509313e-05	ci right 9.239428e-05	k: 367	n:4400000
Cons ci ratio: 3.807394e-01	ci left: 1.951813e-05	ci right 2.888831e-05	k: 105	n:4400000
KS ci ratio: 5.695530e-03	ci left: 9.691837e-02	ci right 9.747216e-02	k: 427658	n:4400000
DOCK3   4400000 perm   9712 sec   (453 perm/sec)   p_kst 9.719500e-02   p_cons 2.386364e-05   p_joint 8.340909e-05

Joint ci ratio: 2.037825e-01	ci left: 7.535319e-05	ci right 9.266142e-05	k: 369	n:4410000
Cons ci ratio: 3.789561e-01	ci left: 1.967898e-05	ci right 2.907112e-05	k: 106	n:4410000
KS ci ratio: 5.688973e-03	ci left: 9.692164e-02	ci right 9.747481e-02	k: 428643	n:4410000
DOCK3   4410000 perm   9755 sec   (452 perm/sec)   p_kst 9.719796e-02   p_cons 2.403628e-05   p_joint 8.367347e-05

Joint ci ratio: 2.035077e-01	ci left: 7.539742e-05	ci right 9.268954e-05	k: 370	n:4420000
Cons ci ratio: 3.789561e-01	ci left: 1.963446e-05	ci right 2.900534e-05	k: 106	n:4420000
KS ci ratio: 5.682248e-03	ci left: 9.693077e-02	ci right 9.748334e-02	k: 429654	n:4420000
DOCK3   4420000 perm   9796 sec   (451 perm/sec)   p_kst 9.720679e-02   p_cons 2.398190e-05   p_joint 8.371041e-05

Joint ci ratio: 2.029613e-01	ci left: 7.565572e-05	ci right 9.295472e-05	k: 372	n:4430000
Cons ci ratio: 3.771975e-01	ci left: 1.979442e-05	ci right 2.918696e-05	k: 107	n:4430000
KS ci ratio: 5.676087e-03	ci left: 9.692317e-02	ci right 9.747510e-02	k: 430591	n:4430000
DOCK3   4430000 perm   9838 sec   (450 perm/sec)   p_kst 9.719887e-02   p_cons 2.415350e-05   p_joint 8.397291e-05

Joint ci ratio: 2.026898e-01	ci left: 7.569911e-05	ci right 9.298201e-05	k: 373	n:4440000
Cons ci ratio: 3.771975e-01	ci left: 1.974983e-05	ci right 2.912122e-05	k: 107	n:4440000
KS ci ratio: 5.669961e-03	ci left: 9.691516e-02	ci right 9.746644e-02	k: 431526	n:4440000
DOCK3   4440000 perm   9879 sec   (449 perm/sec)   p_kst 9.719054e-02   p_cons 2.409910e-05   p_joint 8.400901e-05

Joint ci ratio: 2.154546e-01	ci left: 6.637146e-05	ci right 8.260548e-05	k: 330	n:4450000
Cons ci ratio: 3.771976e-01	ci left: 1.970545e-05	ci right 2.905578e-05	k: 107	n:4450000
KS ci ratio: 5.663513e-03	ci left: 9.691774e-02	ci right 9.746841e-02	k: 432508	n:4450000
DOCK3   4450000 perm   9922 sec   (449 perm/sec)   p_kst 9.719281e-02   p_cons 2.404494e-05   p_joint 7.415730e-05

Joint ci ratio: 2.151299e-01	ci left: 6.643477e-05	ci right 8.265655e-05	k: 331	n:4460000
Cons ci ratio: 3.771976e-01	ci left: 1.966127e-05	ci right 2.899063e-05	k: 107	n:4460000
KS ci ratio: 5.657312e-03	ci left: 9.691336e-02	ci right 9.746340e-02	k: 433459	n:4460000
DOCK3   4460000 perm   9964 sec   (448 perm/sec)   p_kst 9.718812e-02   p_cons 2.399103e-05   p_joint 7.421525e-05

Joint ci ratio: 2.151299e-01	ci left: 6.628615e-05	ci right 8.247163e-05	k: 331	n:4470000
Cons ci ratio: 3.771976e-01	ci left: 1.961728e-05	ci right 2.892578e-05	k: 107	n:4470000
KS ci ratio: 5.650749e-03	ci left: 9.692084e-02	ci right 9.747028e-02	k: 434463	n:4470000
DOCK3   4470000 perm   10006 sec   (447 perm/sec)   p_kst 9.719530e-02   p_cons 2.393736e-05   p_joint 7.404922e-05

Joint ci ratio: 1.728938e-01	ci left: 1.048135e-04	ci right 1.248598e-04	k: 513	n:4480000
Cons ci ratio: 3.754633e-01	ci left: 1.977560e-05	ci right 2.910544e-05	k: 108	n:4480000
KS ci ratio: 5.644086e-03	ci left: 9.693208e-02	ci right 9.748094e-02	k: 435484	n:4480000
DOCK3   4480000 perm   10047 sec   (446 perm/sec)   p_kst 9.720625e-02   p_cons 2.410714e-05   p_joint 1.145089e-04

Joint ci ratio: 1.728939e-01	ci left: 1.045801e-04	ci right 1.245817e-04	k: 513	n:4490000
Cons ci ratio: 3.737527e-01	ci left: 1.993330e-05	ci right 2.928421e-05	k: 109	n:4490000
KS ci ratio: 5.637426e-03	ci left: 9.694394e-02	ci right 9.749221e-02	k: 436508	n:4490000
DOCK3   4490000 perm   10089 sec   (445 perm/sec)   p_kst 9.721782e-02   p_cons 2.427617e-05   p_joint 1.142539e-04

Joint ci ratio: 1.728939e-01	ci left: 1.043477e-04	ci right 1.243049e-04	k: 513	n:4500000
Cons ci ratio: 3.737527e-01	ci left: 1.988901e-05	ci right 2.921914e-05	k: 109	n:4500000
KS ci ratio: 5.631032e-03	ci left: 9.694820e-02	ci right 9.749587e-02	k: 437498	n:4500000
DOCK3   4500000 perm   10132 sec   (444 perm/sec)   p_kst 9.722178e-02   p_cons 2.422222e-05   p_joint 1.140000e-04

Joint ci ratio: 1.727260e-01	ci left: 1.043285e-04	ci right 1.242606e-04	k: 514	n:4510000
Cons ci ratio: 3.720653e-01	ci left: 2.004586e-05	ci right 2.939677e-05	k: 110	n:4510000
KS ci ratio: 5.624638e-03	ci left: 9.695311e-02	ci right 9.750018e-02	k: 438491	n:4510000
DOCK3   4510000 perm   10173 sec   (443 perm/sec)   p_kst 9.722639e-02   p_cons 2.439024e-05   p_joint 1.139690e-04

Joint ci ratio: 1.722250e-01	ci left: 1.047327e-04	ci right 1.246780e-04	k: 517	n:4520000
Cons ci ratio: 3.687579e-01	ci left: 2.040280e-05	ci right 2.981521e-05	k: 112	n:4520000
KS ci ratio: 5.618195e-03	ci left: 9.696020e-02	ci right 9.750669e-02	k: 439494	n:4520000
DOCK3   4520000 perm   10215 sec   (442 perm/sec)   p_kst 9.723319e-02   p_cons 2.477876e-05   p_joint 1.143805e-04

Joint ci ratio: 1.720590e-01	ci left: 1.047128e-04	ci right 1.246330e-04	k: 518	n:4530000
Cons ci ratio: 3.687579e-01	ci left: 2.035776e-05	ci right 2.974940e-05	k: 112	n:4530000
KS ci ratio: 5.611922e-03	ci left: 9.696263e-02	ci right 9.750852e-02	k: 440476	n:4530000
DOCK3   4530000 perm   10257 sec   (442 perm/sec)   p_kst 9.723532e-02   p_cons 2.472406e-05   p_joint 1.143488e-04

Joint ci ratio: 1.713997e-01	ci left: 1.053253e-04	ci right 1.252774e-04	k: 522	n:4540000
Cons ci ratio: 3.687580e-01	ci left: 2.031292e-05	ci right 2.968387e-05	k: 112	n:4540000
KS ci ratio: 5.605825e-03	ci left: 9.696022e-02	ci right 9.750550e-02	k: 441436	n:4540000
DOCK3   4540000 perm   10299 sec   (441 perm/sec)   p_kst 9.723260e-02   p_cons 2.466960e-05   p_joint 1.149780e-04

Joint ci ratio: 1.811927e-01	ci left: 9.353883e-05	ci right 1.123818e-04	k: 467	n:4550000
Cons ci ratio: 3.655372e-01	ci left: 2.066728e-05	ci right 3.009857e-05	k: 114	n:4550000
KS ci ratio: 5.599699e-03	ci left: 9.695935e-02	ci right 9.750402e-02	k: 442403	n:4550000
DOCK3   4550000 perm   10342 sec   (440 perm/sec)   p_kst 9.723143e-02   p_cons 2.505495e-05   p_joint 1.026374e-04

Joint ci ratio: 1.811927e-01	ci left: 9.333370e-05	ci right 1.121353e-04	k: 467	n:4560000
Cons ci ratio: 3.655372e-01	ci left: 2.062196e-05	ci right 3.003256e-05	k: 114	n:4560000
KS ci ratio: 5.593446e-03	ci left: 9.696308e-02	ci right 9.750717e-02	k: 443391	n:4560000
DOCK3   4560000 perm   10385 sec   (439 perm/sec)   p_kst 9.723487e-02   p_cons 2.500000e-05   p_joint 1.024123e-04

Joint ci ratio: 1.811928e-01	ci left: 9.312947e-05	ci right 1.118900e-04	k: 467	n:4570000
Cons ci ratio: 3.655372e-01	ci left: 2.057684e-05	ci right 2.996684e-05	k: 114	n:4570000
KS ci ratio: 5.587088e-03	ci left: 9.697073e-02	ci right 9.751424e-02	k: 444397	n:4570000
DOCK3   4570000 perm   10427 sec   (438 perm/sec)   p_kst 9.724223e-02   p_cons 2.494530e-05   p_joint 1.021882e-04

Joint ci ratio: 1.808068e-01	ci left: 9.334303e-05	ci right 1.121021e-04	k: 469	n:4580000
Cons ci ratio: 3.639582e-01	ci left: 2.073024e-05	ci right 3.013968e-05	k: 115	n:4580000
KS ci ratio: 5.581051e-03	ci left: 9.696897e-02	ci right 9.751189e-02	k: 445360	n:4580000
DOCK3   4580000 perm   10470 sec   (437 perm/sec)   p_kst 9.724017e-02   p_cons 2.510917e-05   p_joint 1.024017e-04

Joint ci ratio: 1.804233e-01	ci left: 9.355570e-05	ci right 1.123133e-04	k: 471	n:4590000
Cons ci ratio: 3.623995e-01	ci left: 2.088306e-05	ci right 3.031168e-05	k: 116	n:4590000
KS ci ratio: 5.574528e-03	ci left: 9.698311e-02	ci right 9.752546e-02	k: 446396	n:4590000
DOCK3   4590000 perm   10513 sec   (437 perm/sec)   p_kst 9.725403e-02   p_cons 2.527233e-05   p_joint 1.026144e-04

Joint ci ratio: 1.802325e-01	ci left: 9.355989e-05	ci right 1.122963e-04	k: 472	n:4600000
Cons ci ratio: 3.608606e-01	ci left: 2.103530e-05	ci right 3.048284e-05	k: 117	n:4600000
KS ci ratio: 5.568532e-03	ci left: 9.698133e-02	ci right 9.752309e-02	k: 447359	n:4600000
DOCK3   4600000 perm   10554 sec   (436 perm/sec)   p_kst 9.725196e-02   p_cons 2.543478e-05   p_joint 1.026087e-04

Joint ci ratio: 1.802325e-01	ci left: 9.335694e-05	ci right 1.120527e-04	k: 472	n:4610000
Cons ci ratio: 3.608606e-01	ci left: 2.098967e-05	ci right 3.041672e-05	k: 117	n:4610000
KS ci ratio: 5.562540e-03	ci left: 9.698000e-02	ci right 9.752116e-02	k: 448324	n:4610000
DOCK3   4610000 perm   10597 sec   (435 perm/sec)   p_kst 9.725033e-02   p_cons 2.537961e-05   p_joint 1.023861e-04

Joint ci ratio: 1.858169e-01	ci left: 8.737183e-05	ci right 1.054723e-04	k: 444	n:4620000
Cons ci ratio: 3.608606e-01	ci left: 2.094424e-05	ci right 3.035088e-05	k: 117	n:4620000
KS ci ratio: 5.556609e-03	ci left: 9.697737e-02	ci right 9.751794e-02	k: 449283	n:4620000
DOCK3   4620000 perm   10640 sec   (434 perm/sec)   p_kst 9.724740e-02   p_cons 2.532468e-05   p_joint 9.610390e-05

Joint ci ratio: 1.856084e-01	ci left: 8.738907e-05	ci right 1.054705e-04	k: 445	n:4630000
Cons ci ratio: 3.593412e-01	ci left: 2.109545e-05	ci right 3.052077e-05	k: 118	n:4630000
KS ci ratio: 5.550670e-03	ci left: 9.697562e-02	ci right 9.751560e-02	k: 450246	n:4630000
DOCK3   4630000 perm   10683 sec   (433 perm/sec)   p_kst 9.724536e-02   p_cons 2.548596e-05   p_joint 9.611231e-05

Joint ci ratio: 1.851936e-01	ci left: 8.761176e-05	ci right 1.056942e-04	k: 447	n:4640000
Cons ci ratio: 3.593412e-01	ci left: 2.104998e-05	ci right 3.045499e-05	k: 118	n:4640000
KS ci ratio: 5.544777e-03	ci left: 9.697301e-02	ci right 9.751241e-02	k: 451205	n:4640000
DOCK3   4640000 perm   10726 sec   (433 perm/sec)   p_kst 9.724246e-02   p_cons 2.543103e-05   p_joint 9.633621e-05

Joint ci ratio: 1.851937e-01	ci left: 8.742335e-05	ci right 1.054669e-04	k: 447	n:4650000
Cons ci ratio: 3.593412e-01	ci left: 2.100471e-05	ci right 3.038950e-05	k: 118	n:4650000
KS ci ratio: 5.539188e-03	ci left: 9.696140e-02	ci right 9.750018e-02	k: 452122	n:4650000
DOCK3   4650000 perm   10769 sec   (432 perm/sec)   p_kst 9.723054e-02   p_cons 2.537634e-05   p_joint 9.612903e-05

Joint ci ratio: 1.847816e-01	ci left: 8.764505e-05	ci right 1.056896e-04	k: 449	n:4660000
Cons ci ratio: 3.578408e-01	ci left: 2.115490e-05	ci right 3.055813e-05	k: 119	n:4660000
KS ci ratio: 5.532966e-03	ci left: 9.697041e-02	ci right 9.750863e-02	k: 453135	n:4660000
DOCK3   4660000 perm   10811 sec   (431 perm/sec)   p_kst 9.723927e-02   p_cons 2.553648e-05   p_joint 9.635193e-05

Joint ci ratio: 1.841687e-01	ci left: 8.807011e-05	ci right 1.061354e-04	k: 452	n:4670000
Cons ci ratio: 3.563590e-01	ci left: 2.130453e-05	ci right 3.072596e-05	k: 120	n:4670000
KS ci ratio: 5.527076e-03	ci left: 9.696954e-02	ci right 9.750719e-02	k: 454102	n:4670000
DOCK3   4670000 perm   10855 sec   (430 perm/sec)   p_kst 9.723812e-02   p_cons 2.569593e-05   p_joint 9.678801e-05

Joint ci ratio: 1.837635e-01	ci left: 8.828960e-05	ci right 1.063556e-04	k: 454	n:4680000
Cons ci ratio: 3.563590e-01	ci left: 2.125900e-05	ci right 3.066030e-05	k: 120	n:4680000
KS ci ratio: 5.520915e-03	ci left: 9.697786e-02	ci right 9.751495e-02	k: 455112	n:4680000
DOCK3   4680000 perm   10899 sec   (429 perm/sec)   p_kst 9.724615e-02   p_cons 2.564103e-05   p_joint 9.700855e-05

Joint ci ratio: 1.833609e-01	ci left: 8.850820e-05	ci right 1.065748e-04	k: 456	n:4690000
Cons ci ratio: 3.548955e-01	ci left: 2.140785e-05	ci right 3.082712e-05	k: 121	n:4690000
KS ci ratio: 5.515216e-03	ci left: 9.697208e-02	ci right 9.750859e-02	k: 456056	n:4690000
DOCK3   4690000 perm   10943 sec   (429 perm/sec)   p_kst 9.724009e-02   p_cons 2.579957e-05   p_joint 9.722814e-05

Joint ci ratio: 1.829610e-01	ci left: 8.872590e-05	ci right 1.067931e-04	k: 458	n:4700000
Cons ci ratio: 3.548955e-01	ci left: 2.136230e-05	ci right 3.076153e-05	k: 121	n:4700000
KS ci ratio: 5.509409e-03	ci left: 9.697037e-02	ci right 9.750630e-02	k: 457019	n:4700000
DOCK3   4700000 perm   10987 sec   (428 perm/sec)   p_kst 9.723809e-02   p_cons 2.574468e-05   p_joint 9.744681e-05

Joint ci ratio: 1.825636e-01	ci left: 8.894273e-05	ci right 1.070104e-04	k: 460	n:4710000
Cons ci ratio: 3.548955e-01	ci left: 2.131694e-05	ci right 3.069622e-05	k: 121	n:4710000
KS ci ratio: 5.503806e-03	ci left: 9.696273e-02	ci right 9.749807e-02	k: 457954	n:4710000
DOCK3   4710000 perm   11031 sec   (427 perm/sec)   p_kst 9.723015e-02   p_cons 2.569002e-05   p_joint 9.766454e-05

Joint ci ratio: 2.048937e-01	ci left: 6.960003e-05	ci right 8.568488e-05	k: 365	n:4720000
Cons ci ratio: 3.534499e-01	ci left: 2.146480e-05	ci right 3.086182e-05	k: 122	n:4720000
KS ci ratio: 5.498114e-03	ci left: 9.695850e-02	ci right 9.749326e-02	k: 458905	n:4720000
DOCK3   4720000 perm   11075 sec   (426 perm/sec)   p_kst 9.722564e-02   p_cons 2.584746e-05   p_joint 7.733051e-05

Joint ci ratio: 2.048937e-01	ci left: 6.945288e-05	ci right 8.550372e-05	k: 365	n:4730000
Cons ci ratio: 3.534499e-01	ci left: 2.141942e-05	ci right 3.079658e-05	k: 122	n:4730000
KS ci ratio: 5.492426e-03	ci left: 9.695472e-02	ci right 9.748890e-02	k: 459858	n:4730000
DOCK3   4730000 perm   11118 sec   (425 perm/sec)   p_kst 9.722156e-02   p_cons 2.579281e-05   p_joint 7.716702e-05

Joint ci ratio: 2.046144e-01	ci left: 6.950651e-05	ci right 8.554511e-05	k: 366	n:4740000
Cons ci ratio: 3.520218e-01	ci left: 2.156651e-05	ci right 3.096119e-05	k: 123	n:4740000
KS ci ratio: 5.486473e-03	ci left: 9.696001e-02	ci right 9.749364e-02	k: 460854	n:4740000
DOCK3   4740000 perm   11162 sec   (425 perm/sec)   p_kst 9.722658e-02   p_cons 2.594937e-05   p_joint 7.721519e-05

Joint ci ratio: 2.040591e-01	ci left: 6.975969e-05	ci right 8.580758e-05	k: 368	n:4750000
Cons ci ratio: 3.520218e-01	ci left: 2.152110e-05	ci right 3.089601e-05	k: 123	n:4750000
KS ci ratio: 5.480709e-03	ci left: 9.695982e-02	ci right 9.749289e-02	k: 461824	n:4750000
DOCK3   4750000 perm   11206 sec   (424 perm/sec)   p_kst 9.722611e-02   p_cons 2.589474e-05   p_joint 7.747368e-05

Joint ci ratio: 2.037832e-01	ci left: 6.981250e-05	ci right 8.584811e-05	k: 369	n:4760000
Cons ci ratio: 3.506108e-01	ci left: 2.166744e-05	ci right 3.105965e-05	k: 124	n:4760000
KS ci ratio: 5.474866e-03	ci left: 9.696277e-02	ci right 9.749528e-02	k: 462809	n:4760000
DOCK3   4760000 perm   11250 sec   (423 perm/sec)   p_kst 9.722878e-02   p_cons 2.605042e-05   p_joint 7.752101e-05

Joint ci ratio: 2.035083e-01	ci left: 6.986509e-05	ci right 8.588845e-05	k: 370	n:4770000
Cons ci ratio: 3.506108e-01	ci left: 2.162201e-05	ci right 3.099454e-05	k: 124	n:4770000
KS ci ratio: 5.469237e-03	ci left: 9.695943e-02	ci right 9.749138e-02	k: 463764	n:4770000
DOCK3   4770000 perm   11295 sec   (422 perm/sec)   p_kst 9.722516e-02   p_cons 2.599581e-05   p_joint 7.756813e-05

Joint ci ratio: 2.032346e-01	ci left: 6.991748e-05	ci right 8.592861e-05	k: 371	n:4780000
Cons ci ratio: 3.506108e-01	ci left: 2.157678e-05	ci right 3.092970e-05	k: 124	n:4780000
KS ci ratio: 5.463482e-03	ci left: 9.696070e-02	ci right 9.749209e-02	k: 464741	n:4780000
DOCK3   4780000 perm   11339 sec   (422 perm/sec)   p_kst 9.722615e-02   p_cons 2.594142e-05   p_joint 7.761506e-05

Joint ci ratio: 2.032346e-01	ci left: 6.977152e-05	ci right 8.574922e-05	k: 371	n:4790000
Cons ci ratio: 3.506108e-01	ci left: 2.153173e-05	ci right 3.086512e-05	k: 124	n:4790000
KS ci ratio: 5.457466e-03	ci left: 9.697093e-02	ci right 9.750179e-02	k: 465761	n:4790000
DOCK3   4790000 perm   11384 sec   (421 perm/sec)   p_kst 9.723612e-02   p_cons 2.588727e-05   p_joint 7.745303e-05

Joint ci ratio: 2.032346e-01	ci left: 6.962616e-05	ci right 8.557058e-05	k: 371	n:4800000
Cons ci ratio: 3.492167e-01	ci left: 2.167690e-05	ci right 3.102739e-05	k: 125	n:4800000
KS ci ratio: 5.451742e-03	ci left: 9.697238e-02	ci right 9.750269e-02	k: 466739	n:4800000
DOCK3   4800000 perm   11429 sec   (420 perm/sec)   p_kst 9.723729e-02   p_cons 2.604167e-05   p_joint 7.729167e-05

Joint ci ratio: 2.026905e-01	ci left: 6.987608e-05	ci right 8.582958e-05	k: 373	n:4810000
Cons ci ratio: 3.492167e-01	ci left: 2.163183e-05	ci right 3.096289e-05	k: 125	n:4810000
KS ci ratio: 5.446113e-03	ci left: 9.697133e-02	ci right 9.750109e-02	k: 467705	n:4810000
DOCK3   4810000 perm   11474 sec   (419 perm/sec)   p_kst 9.723597e-02   p_cons 2.598753e-05   p_joint 7.754678e-05

Joint ci ratio: 2.026905e-01	ci left: 6.973111e-05	ci right 8.565151e-05	k: 373	n:4820000
Cons ci ratio: 3.492168e-01	ci left: 2.158695e-05	ci right 3.089865e-05	k: 125	n:4820000
KS ci ratio: 5.440546e-03	ci left: 9.696884e-02	ci right 9.749804e-02	k: 468664	n:4820000
DOCK3   4820000 perm   11519 sec   (418 perm/sec)   p_kst 9.723320e-02   p_cons 2.593361e-05   p_joint 7.738589e-05

Joint ci ratio: 2.026905e-01	ci left: 6.958673e-05	ci right 8.547418e-05	k: 373	n:4830000
Cons ci ratio: 3.478391e-01	ci left: 2.173118e-05	ci right 3.105977e-05	k: 126	n:4830000
KS ci ratio: 5.434529e-03	ci left: 9.698145e-02	ci right 9.751013e-02	k: 469696	n:4830000
DOCK3   4830000 perm   11564 sec   (418 perm/sec)   p_kst 9.724555e-02   p_cons 2.608696e-05   p_joint 7.722567e-05

Joint ci ratio: 2.024201e-01	ci left: 6.963909e-05	ci right 8.551465e-05	k: 374	n:4840000
Cons ci ratio: 3.478392e-01	ci left: 2.168628e-05	ci right 3.099560e-05	k: 126	n:4840000
KS ci ratio: 5.428755e-03	ci left: 9.698679e-02	ci right 9.751493e-02	k: 470693	n:4840000
DOCK3   4840000 perm   11609 sec   (417 perm/sec)   p_kst 9.725062e-02   p_cons 2.603306e-05   p_joint 7.727273e-05

Joint ci ratio: 2.018824e-01	ci left: 6.988701e-05	ci right 8.577155e-05	k: 376	n:4850000
Cons ci ratio: 3.464777e-01	ci left: 2.182977e-05	ci right 3.115578e-05	k: 127	n:4850000
KS ci ratio: 5.423343e-03	ci left: 9.698098e-02	ci right 9.750857e-02	k: 471636	n:4850000
DOCK3   4850000 perm   11655 sec   (416 perm/sec)   p_kst 9.724454e-02   p_cons 2.618557e-05   p_joint 7.752577e-05

Joint ci ratio: 2.016152e-01	ci left: 6.993857e-05	ci right 8.581121e-05	k: 377	n:4860000
Cons ci ratio: 3.438021e-01	ci left: 2.216071e-05	ci right 3.153873e-05	k: 129	n:4860000
KS ci ratio: 5.417313e-03	ci left: 9.699575e-02	ci right 9.752283e-02	k: 472679	n:4860000
DOCK3   4860000 perm   11699 sec   (415 perm/sec)   p_kst 9.725905e-02   p_cons 2.654321e-05   p_joint 7.757202e-05

Joint ci ratio: 2.016152e-01	ci left: 6.979496e-05	ci right 8.563500e-05	k: 377	n:4870000
Cons ci ratio: 3.438021e-01	ci left: 2.211521e-05	ci right 3.147397e-05	k: 129	n:4870000
KS ci ratio: 5.411436e-03	ci left: 9.700616e-02	ci right 9.753272e-02	k: 473701	n:4870000
DOCK3   4870000 perm   11744 sec   (415 perm/sec)   p_kst 9.726920e-02   p_cons 2.648871e-05   p_joint 7.741273e-05

Joint ci ratio: 2.016152e-01	ci left: 6.965194e-05	ci right 8.545952e-05	k: 377	n:4880000
Cons ci ratio: 3.438021e-01	ci left: 2.206989e-05	ci right 3.140947e-05	k: 129	n:4880000
KS ci ratio: 5.406214e-03	ci left: 9.699585e-02	ci right 9.752184e-02	k: 474622	n:4880000
DOCK3   4880000 perm   11788 sec   (414 perm/sec)   p_kst 9.725861e-02   p_cons 2.643443e-05   p_joint 7.725410e-05

Joint ci ratio: 2.010839e-01	ci left: 6.989788e-05	ci right 8.571435e-05	k: 379	n:4890000
Cons ci ratio: 3.424874e-01	ci left: 2.221163e-05	ci right 3.156729e-05	k: 130	n:4890000
KS ci ratio: 5.400901e-03	ci left: 9.698905e-02	ci right 9.751449e-02	k: 475560	n:4890000
DOCK3   4890000 perm   11833 sec   (413 perm/sec)   p_kst 9.725153e-02   p_cons 2.658487e-05   p_joint 7.750511e-05

Joint ci ratio: 2.010839e-01	ci left: 6.975523e-05	ci right 8.553942e-05	k: 379	n:4900000
Cons ci ratio: 3.424874e-01	ci left: 2.216630e-05	ci right 3.150287e-05	k: 130	n:4900000
KS ci ratio: 5.395447e-03	ci left: 9.698738e-02	ci right 9.751228e-02	k: 476523	n:4900000
DOCK3   4900000 perm   11878 sec   (413 perm/sec)   p_kst 9.724959e-02   p_cons 2.653061e-05   p_joint 7.734694e-05

Joint ci ratio: 2.008199e-01	ci left: 6.980658e-05	ci right 8.557911e-05	k: 380	n:4910000
Cons ci ratio: 3.424874e-01	ci left: 2.212116e-05	ci right 3.143871e-05	k: 130	n:4910000
KS ci ratio: 5.390234e-03	ci left: 9.697839e-02	ci right 9.750273e-02	k: 477450	n:4910000
DOCK3   4910000 perm   11924 sec   (412 perm/sec)   p_kst 9.724033e-02   p_cons 2.647658e-05   p_joint 7.739308e-05

Joint ci ratio: 2.005568e-01	ci left: 6.985774e-05	ci right 8.561862e-05	k: 381	n:4920000
Cons ci ratio: 3.424874e-01	ci left: 2.207620e-05	ci right 3.137481e-05	k: 130	n:4920000
KS ci ratio: 5.384918e-03	ci left: 9.697330e-02	ci right 9.749709e-02	k: 478396	n:4920000
DOCK3   4920000 perm   11971 sec   (411 perm/sec)   p_kst 9.723496e-02   p_cons 2.642276e-05   p_joint 7.743902e-05

Joint ci ratio: 2.002948e-01	ci left: 6.990870e-05	ci right 8.565796e-05	k: 382	n:4930000
Cons ci ratio: 3.424874e-01	ci left: 2.203142e-05	ci right 3.131117e-05	k: 130	n:4930000
KS ci ratio: 5.379394e-03	ci left: 9.697552e-02	ci right 9.749879e-02	k: 479378	n:4930000
DOCK3   4930000 perm   12017 sec   (410 perm/sec)   p_kst 9.723692e-02   p_cons 2.636917e-05   p_joint 7.748479e-05

Joint ci ratio: 2.002949e-01	ci left: 6.976718e-05	ci right 8.548456e-05	k: 382	n:4940000
Cons ci ratio: 3.424874e-01	ci left: 2.198682e-05	ci right 3.124779e-05	k: 130	n:4940000
KS ci ratio: 5.373788e-03	ci left: 9.698097e-02	ci right 9.750372e-02	k: 480376	n:4940000
DOCK3   4940000 perm   12062 sec   (410 perm/sec)   p_kst 9.724211e-02   p_cons 2.631579e-05   p_joint 7.732794e-05

Joint ci ratio: 2.002949e-01	ci left: 6.962624e-05	ci right 8.531186e-05	k: 382	n:4950000
Cons ci ratio: 3.424874e-01	ci left: 2.194240e-05	ci right 3.118466e-05	k: 130	n:4950000
KS ci ratio: 5.368168e-03	ci left: 9.698740e-02	ci right 9.750964e-02	k: 481379	n:4950000
DOCK3   4950000 perm   12107 sec   (409 perm/sec)   p_kst 9.724828e-02   p_cons 2.626263e-05   p_joint 7.717172e-05

Joint ci ratio: 2.002949e-01	ci left: 6.948586e-05	ci right 8.513986e-05	k: 382	n:4960000
Cons ci ratio: 3.424874e-01	ci left: 2.189816e-05	ci right 3.112179e-05	k: 130	n:4960000
KS ci ratio: 5.362560e-03	ci left: 9.699401e-02	ci right 9.751574e-02	k: 482383	n:4960000
DOCK3   4960000 perm   12152 sec   (408 perm/sec)   p_kst 9.725464e-02   p_cons 2.620968e-05   p_joint 7.701613e-05

Joint ci ratio: 2.000339e-01	ci left: 6.953718e-05	ci right 8.517983e-05	k: 383	n:4970000
Cons ci ratio: 3.424874e-01	ci left: 2.185410e-05	ci right 3.105917e-05	k: 130	n:4970000
KS ci ratio: 5.357092e-03	ci left: 9.699657e-02	ci right 9.751778e-02	k: 483367	n:4970000
DOCK3   4970000 perm   12199 sec   (407 perm/sec)   p_kst 9.725694e-02   p_cons 2.615694e-05   p_joint 7.706237e-05

Joint ci ratio: 1.995150e-01	ci left: 6.977906e-05	ci right 8.543046e-05	k: 385	n:4980000
Cons ci ratio: 3.411876e-01	ci left: 2.199378e-05	ci right 3.121478e-05	k: 131	n:4980000
KS ci ratio: 5.351929e-03	ci left: 9.698970e-02	ci right 9.751037e-02	k: 484304	n:4980000
DOCK3   4980000 perm   12244 sec   (407 perm/sec)   p_kst 9.724980e-02   p_cons 2.630522e-05   p_joint 7.730924e-05

Joint ci ratio: 1.995150e-01	ci left: 6.963923e-05	ci right 8.525926e-05	k: 385	n:4990000
Cons ci ratio: 3.411877e-01	ci left: 2.194971e-05	ci right 3.115222e-05	k: 131	n:4990000
KS ci ratio: 5.346688e-03	ci left: 9.698586e-02	ci right 9.750599e-02	k: 485256	n:4990000
DOCK3   4990000 perm   12289 sec   (406 perm/sec)   p_kst 9.724569e-02   p_cons 2.625251e-05   p_joint 7.715431e-05

Joint ci ratio: 1.995150e-01	ci left: 6.949995e-05	ci right 8.508874e-05	k: 385	n:5000000
Cons ci ratio: 3.411877e-01	ci left: 2.190581e-05	ci right 3.108992e-05	k: 131	n:5000000
KS ci ratio: 5.341415e-03	ci left: 9.698363e-02	ci right 9.750324e-02	k: 486216	n:5000000
DOCK3   5000000 perm   12335 sec   (405 perm/sec)   p_kst 9.724320e-02   p_cons 2.620000e-05   p_joint 7.700000e-05

Outputting figure to mutsig2_images.part000000000052/DOCK3.6_6305_5000000_0.097243_2.62e-05_7.7e-05.png
                gene_name: DOCK3
               theta_stop: 0.34 
                    nperm: 5000000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.098 
                   p_cons: 2.62e-05 
      ci_cons_bounds_left: 2.19e-05 
     ci_cons_bounds_right: 3.11e-05 
                  p_joint: 7.70e-05 
     ci_joint_bounds_left: 6.95e-05 
    ci_joint_bounds_right: 8.51e-05 

Current progress: 42 percent done.
DNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
Cons ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
DNM1   10000 perm   2 sec   (5026 perm/sec)   p_kst 4.578000e-01   p_cons 7.590000e-02   p_joint 1.772000e-01

Joint ci ratio: 6.243353e-02	ci left: 1.594848e-01	ci right 1.698129e-01	k: 3292	n:20000
Cons ci ratio: 9.569699e-02	ci left: 7.368425e-02	ci right 8.113917e-02	k: 1547	n:20000
KS ci ratio: 2.969057e-02	ci left: 4.587173e-01	ci right 4.725927e-01	k: 9313	n:20000
DNM1   20000 perm   4 sec   (4514 perm/sec)   p_kst 4.656500e-01   p_cons 7.735000e-02   p_joint 1.646000e-01

Outputting figure to mutsig2_images.part000000000052/DNM1.5_2704_20000_0.46565_0.07735_0.1646.png
                gene_name: DNM1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 44 percent done.
DNMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
Cons ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
DNMT1   10000 perm   3 sec   (3921 perm/sec)   p_kst 8.226000e-01   p_cons 3.089000e-01   p_joint 7.872000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT1.5_5063_10000_0.8226_0.3089_0.7872.png
                gene_name: DNMT1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 46 percent done.
DPY19L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
Cons ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
KS ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
DPY19L3   10000 perm   2 sec   (5165 perm/sec)   p_kst 4.096000e-01   p_cons 1.878000e-01   p_joint 3.245000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L3.5_2223_10000_0.4096_0.1878_0.3245.png
                gene_name: DPY19L3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 47 percent done.
DPYSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
Cons ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
KS ci ratio: 8.279696e-02	ci left: 1.754646e-01	ci right 1.907205e-01	k: 1830	n:10000
DPYSL3   10000 perm   2 sec   (5479 perm/sec)   p_kst 1.830000e-01   p_cons 3.095000e-01   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL3.5_1769_10000_0.183_0.3095_0.1865.png
                gene_name: DPYSL3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 49 percent done.
DNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
KS ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
DNM3   10000 perm   2 sec   (5443 perm/sec)   p_kst 9.734000e-01   p_cons 8.536000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DNM3.4_2676_10000_0.9734_0.8536_1.png
                gene_name: DNM3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
DNMT3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
KS ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
DNMT3B   10000 perm   2 sec   (4988 perm/sec)   p_kst 9.740000e-01   p_cons 5.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DNMT3B.4_2690_10000_0.974_0.5832_1.png
                gene_name: DNMT3B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
DOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
Cons ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
KS ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
DOK1   10000 perm   2 sec   (6120 perm/sec)   p_kst 1.643000e-01   p_cons 3.844000e-01   p_joint 3.033000e-01

Outputting figure to mutsig2_images.part000000000052/DOK1.4_1466_10000_0.1643_0.3844_0.3033.png
                gene_name: DOK1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 54 percent done.
DPEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
DPEP1   10000 perm   2 sec   (5851 perm/sec)   p_kst 9.525000e-01   p_cons 3.672000e-01   p_joint 7.288000e-01

Outputting figure to mutsig2_images.part000000000052/DPEP1.4_1276_10000_0.9525_0.3672_0.7288.png
                gene_name: DPEP1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 56 percent done.
DPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
Cons ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
KS ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
DPF3   10000 perm   2 sec   (5702 perm/sec)   p_kst 2.817000e-01   p_cons 7.513000e-01   p_joint 5.469000e-01

Outputting figure to mutsig2_images.part000000000052/DPF3.4_1110_10000_0.2817_0.7513_0.5469.png
                gene_name: DPF3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 58 percent done.
DPPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
DPPA4   10000 perm   2 sec   (6054 perm/sec)   p_kst 1.907000e-01   p_cons 8.450000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000052/DPPA4.4_943_10000_0.1907_0.845_0.411.png
                gene_name: DPPA4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 60 percent done.
DPYSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
Cons ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
DPYSL4   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.287000e-01   p_cons 8.358000e-01   p_joint 4.984000e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL4.4_1775_10000_0.3287_0.8358_0.4984.png
                gene_name: DPYSL4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 61 percent done.
DPYSL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
DPYSL5   10000 perm   2 sec   (5581 perm/sec)   p_kst 8.455000e-01   p_cons 4.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPYSL5.4_1743_10000_0.8455_0.4633_1.png
                gene_name: DPYSL5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
DNM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
DNM1L   10000 perm   2 sec   (5412 perm/sec)   p_kst 1.912000e-01   p_cons 2.916000e-01   p_joint 3.242000e-01

Outputting figure to mutsig2_images.part000000000052/DNM1L.3_2291_10000_0.1912_0.2916_0.3242.png
                gene_name: DNM1L
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 65 percent done.
DNTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
Cons ci ratio: 2.801423e-02	ci left: 6.525320e-01	ci right 6.711736e-01	k: 6619	n:10000
KS ci ratio: 5.602013e-02	ci left: 3.193950e-01	ci right 3.379049e-01	k: 3286	n:10000
DNTT   10000 perm   2 sec   (5952 perm/sec)   p_kst 3.286000e-01   p_cons 6.619000e-01   p_joint 4.705000e-01

Outputting figure to mutsig2_images.part000000000052/DNTT.3_1574_10000_0.3286_0.6619_0.4705.png
                gene_name: DNTT
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 67 percent done.
DOCK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
DOCK6   10000 perm   3 sec   (3829 perm/sec)   p_kst 9.304000e-01   p_cons 1.293000e-01   p_joint 5.351000e-01

Joint ci ratio: 2.814382e-02	ci left: 4.853978e-01	ci right 4.993044e-01	k: 9847	n:20000
Cons ci ratio: 7.272146e-02	ci left: 1.222179e-01	ci right 1.314909e-01	k: 2536	n:20000
KS ci ratio: 7.409135e-03	ci left: 9.298049e-01	ci right 9.367685e-01	k: 18667	n:20000
DOCK6   20000 perm   6 sec   (3513 perm/sec)   p_kst 9.333500e-01   p_cons 1.268000e-01   p_joint 4.923500e-01

Outputting figure to mutsig2_images.part000000000052/DOCK6.3_6336_20000_0.93335_0.1268_0.49235.png
                gene_name: DOCK6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 68 percent done.
DOK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
KS ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
DOK5   10000 perm   2 sec   (6192 perm/sec)   p_kst 8.261000e-01   p_cons 3.724000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000052/DOK5.3_953_10000_0.8261_0.3724_0.7229.png
                gene_name: DOK5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 70 percent done.
DOLPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
Cons ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
KS ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
DOLPP1   10000 perm   1 sec   (6668 perm/sec)   p_kst 7.990000e-02   p_cons 8.510000e-02   p_joint 5.460000e-02

Joint ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
Cons ci ratio: 9.079590e-02	ci left: 8.136634e-02	ci right 8.915473e-02	k: 1704	n:20000
KS ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
DOLPP1   20000 perm   3 sec   (5721 perm/sec)   p_kst 8.135000e-02   p_cons 8.520000e-02   p_joint 1.008500e-01

Outputting figure to mutsig2_images.part000000000052/DOLPP1.3_749_20000_0.08135_0.0852_0.10085.png
                gene_name: DOLPP1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 72 percent done.
DOPEY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
Cons ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
DOPEY1   10000 perm   3 sec   (3572 perm/sec)   p_kst 2.057000e-01   p_cons 8.936000e-01   p_joint 2.631000e-01

Outputting figure to mutsig2_images.part000000000052/DOPEY1.3_7546_10000_0.2057_0.8936_0.2631.png
                gene_name: DOPEY1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
DPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
Cons ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
DPF1   10000 perm   2 sec   (5992 perm/sec)   p_kst 1.220000e-02   p_cons 1.901000e-01   p_joint 1.770000e-02

Joint ci ratio: 1.564056e-01	ci left: 2.806407e-02	ci right 3.287372e-02	k: 608	n:20000
Cons ci ratio: 5.708264e-02	ci left: 1.853251e-01	ci right 1.962649e-01	k: 3815	n:20000
KS ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
DPF1   20000 perm   4 sec   (5247 perm/sec)   p_kst 1.215000e-02   p_cons 1.907500e-01   p_joint 3.040000e-02

Joint ci ratio: 1.394401e-01	ci left: 2.387437e-02	ci right 2.748495e-02	k: 769	n:30000
Cons ci ratio: 4.658285e-02	ci left: 1.864992e-01	ci right 1.954274e-01	k: 5728	n:30000
KS ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
DPF1   30000 perm   6 sec   (4982 perm/sec)   p_kst 1.306667e-02   p_cons 1.909333e-01   p_joint 2.563333e-02

Joint ci ratio: 1.306041e-01	ci left: 2.058481e-02	ci right 2.348516e-02	k: 880	n:40000
Cons ci ratio: 4.061056e-02	ci left: 1.850742e-01	ci right 1.927710e-01	k: 7556	n:40000
KS ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
DPF1   40000 perm   8 sec   (4803 perm/sec)   p_kst 1.332500e-02   p_cons 1.889000e-01   p_joint 2.200000e-02

Joint ci ratio: 1.708395e-01	ci left: 9.529293e-03	ci right 1.132823e-02	k: 520	n:50000
Cons ci ratio: 3.793463e-02	ci left: 1.726312e-01	ci right 1.793265e-01	k: 8798	n:50000
KS ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
DPF1   50000 perm   11 sec   (4662 perm/sec)   p_kst 1.282000e-02   p_cons 1.759600e-01   p_joint 1.040000e-02

Joint ci ratio: 1.589625e-01	ci left: 9.235305e-03	ci right 1.084595e-02	k: 601	n:60000
Cons ci ratio: 3.460718e-02	ci left: 1.731092e-01	ci right 1.792221e-01	k: 10569	n:60000
KS ci ratio: 1.406342e-01	ci left: 1.188366e-02	ci right 1.369725e-02	k: 766	n:60000
DPF1   60000 perm   13 sec   (4539 perm/sec)   p_kst 1.276667e-02   p_cons 1.761500e-01   p_joint 1.001667e-02

Joint ci ratio: 1.494812e-01	ci left: 9.000940e-03	ci right 1.046870e-02	k: 680	n:70000
Cons ci ratio: 3.213445e-02	ci left: 1.724897e-01	ci right 1.781373e-01	k: 12271	n:70000
KS ci ratio: 1.297500e-01	ci left: 1.203567e-02	ci right 1.371935e-02	k: 900	n:70000
DPF1   70000 perm   16 sec   (4437 perm/sec)   p_kst 1.285714e-02   p_cons 1.753000e-01   p_joint 9.714286e-03

Joint ci ratio: 1.426569e-01	ci left: 8.682620e-03	ci right 1.002832e-02	k: 747	n:80000
Cons ci ratio: 3.012436e-02	ci left: 1.720495e-01	ci right 1.773241e-01	k: 13974	n:80000
KS ci ratio: 1.226257e-01	ci left: 1.183854e-02	ci right 1.339710e-02	k: 1008	n:80000
DPF1   80000 perm   18 sec   (4337 perm/sec)   p_kst 1.260000e-02   p_cons 1.746750e-01   p_joint 9.337500e-03

Joint ci ratio: 1.140025e-01	ci left: 1.222694e-02	ci right 1.371581e-02	k: 1166	n:90000
Cons ci ratio: 2.840249e-02	ci left: 1.721911e-01	ci right 1.771632e-01	k: 15720	n:90000
KS ci ratio: 1.160340e-01	ci left: 1.179513e-02	ci right 1.325877e-02	k: 1126	n:90000
DPF1   90000 perm   21 sec   (4242 perm/sec)   p_kst 1.251111e-02   p_cons 1.746667e-01   p_joint 1.295556e-02

Joint ci ratio: 1.083075e-01	ci left: 1.222922e-02	ci right 1.363924e-02	k: 1292	n:100000
Cons ci ratio: 2.698127e-02	ci left: 1.719333e-01	ci right 1.766456e-01	k: 17428	n:100000
KS ci ratio: 1.101787e-01	ci left: 1.181083e-02	ci right 1.319766e-02	k: 1249	n:100000
DPF1   100000 perm   24 sec   (4150 perm/sec)   p_kst 1.249000e-02   p_cons 1.742800e-01   p_joint 1.292000e-02

Joint ci ratio: 1.052452e-01	ci left: 1.179864e-02	ci right 1.311816e-02	k: 1369	n:110000
Cons ci ratio: 2.573043e-02	ci left: 1.719898e-01	ci right 1.764819e-01	k: 19165	n:110000
KS ci ratio: 1.050126e-01	ci left: 1.185177e-02	ci right 1.317412e-02	k: 1375	n:110000
DPF1   110000 perm   27 sec   (4070 perm/sec)   p_kst 1.250000e-02   p_cons 1.742273e-01   p_joint 1.244545e-02

Joint ci ratio: 8.082491e-02	ci left: 1.844738e-02	ci right 2.000931e-02	k: 2306	n:120000
Cons ci ratio: 2.466815e-02	ci left: 1.717012e-01	ci right 1.759979e-01	k: 20861	n:120000
KS ci ratio: 1.036300e-01	ci left: 1.117232e-02	ci right 1.240144e-02	k: 1413	n:120000
DPF1   120000 perm   30 sec   (4001 perm/sec)   p_kst 1.177500e-02   p_cons 1.738417e-01   p_joint 1.921667e-02

Joint ci ratio: 7.884034e-02	ci left: 1.792527e-02	ci right 1.940400e-02	k: 2425	n:130000
Cons ci ratio: 2.370960e-02	ci left: 1.716747e-01	ci right 1.758015e-01	k: 22585	n:130000
KS ci ratio: 1.002232e-01	ci left: 1.104751e-02	ci right 1.222058e-02	k: 1511	n:130000
DPF1   130000 perm   33 sec   (3933 perm/sec)   p_kst 1.162308e-02   p_cons 1.737308e-01   p_joint 1.865385e-02

Joint ci ratio: 7.949624e-02	ci left: 1.639232e-02	ci right 1.775636e-02	k: 2389	n:140000
Cons ci ratio: 2.282579e-02	ci left: 1.720173e-01	ci right 1.759962e-01	k: 24360	n:140000
KS ci ratio: 9.652675e-02	ci left: 1.108053e-02	ci right 1.221126e-02	k: 1629	n:140000
DPF1   140000 perm   36 sec   (3870 perm/sec)   p_kst 1.163571e-02   p_cons 1.740000e-01   p_joint 1.706429e-02

Outputting figure to mutsig2_images.part000000000052/DPF1.3_1323_140000_0.011636_0.174_0.017064.png
                gene_name: DPF1
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 75 percent done.
DPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
Cons ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
KS ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
DPP3   10000 perm   2 sec   (5750 perm/sec)   p_kst 6.162000e-01   p_cons 1.512000e-01   p_joint 6.052000e-01

Outputting figure to mutsig2_images.part000000000052/DPP3.3_2282_10000_0.6162_0.1512_0.6052.png
                gene_name: DPP3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 77 percent done.
DQX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
DQX1   10000 perm   2 sec   (6258 perm/sec)   p_kst 6.894000e-01   p_cons 7.158000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DQX1.3_2198_10000_0.6894_0.7158_1.png
                gene_name: DQX1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
DRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.747785e-02	ci left: 6.611889e-01	ci right 6.797117e-01	k: 6705	n:10000
KS ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
DRAP1   10000 perm   1 sec   (6866 perm/sec)   p_kst 7.638000e-01   p_cons 6.705000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DRAP1.3_646_10000_0.7638_0.6705_1.png
                gene_name: DRAP1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
DRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
KS ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
DRD1   10000 perm   2 sec   (6334 perm/sec)   p_kst 8.682000e-01   p_cons 7.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DRD1.3_1345_10000_0.8682_0.7867_1.png
                gene_name: DRD1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
DNPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
Cons ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
KS ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
DNPEP   10000 perm   2 sec   (6279 perm/sec)   p_kst 5.033000e-01   p_cons 1.849000e-01   p_joint 6.257000e-01

Outputting figure to mutsig2_images.part000000000052/DNPEP.2_1518_10000_0.5033_0.1849_0.6257.png
                gene_name: DNPEP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 84 percent done.
DOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
Cons ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
DOK2   10000 perm   2 sec   (6388 perm/sec)   p_kst 1.258000e-01   p_cons 1.319000e-01   p_joint 1.132000e-01

Joint ci ratio: 6.999770e-02	ci left: 1.307849e-01	ci right 1.403213e-01	k: 2710	n:20000
Cons ci ratio: 6.680972e-02	ci left: 1.419218e-01	ci right 1.517811e-01	k: 2936	n:20000
KS ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
DOK2   20000 perm   4 sec   (5626 perm/sec)   p_kst 1.283000e-01   p_cons 1.468000e-01   p_joint 1.355000e-01

Outputting figure to mutsig2_images.part000000000052/DOK2.2_1259_20000_0.1283_0.1468_0.1355.png
                gene_name: DOK2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 86 percent done.
DPEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
Cons ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
KS ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
DPEP2   10000 perm   2 sec   (6394 perm/sec)   p_kst 1.775000e-01   p_cons 2.991000e-01   p_joint 4.777000e-01

Outputting figure to mutsig2_images.part000000000052/DPEP2.2_1501_10000_0.1775_0.2991_0.4777.png
                gene_name: DPEP2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 88 percent done.
DPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
KS ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
DPF2   10000 perm   2 sec   (6516 perm/sec)   p_kst 8.936000e-01   p_cons 9.410000e-02   p_joint 1

Joint ci ratio: 9.101704e-03	ci left: 8.985089e-01	ci right 9.067736e-01	k: 18054	n:20000
Cons ci ratio: 8.517995e-02	ci left: 9.165694e-02	ci right 9.986102e-02	k: 1914	n:20000
KS ci ratio: 9.651204e-03	ci left: 8.875146e-01	ci right 8.961711e-01	k: 17838	n:20000
DPF2   20000 perm   4 sec   (5656 perm/sec)   p_kst 8.919000e-01   p_cons 9.570000e-02   p_joint 9.027000e-01

Outputting figure to mutsig2_images.part000000000052/DPF2.2_1220_20000_0.8919_0.0957_0.9027.png
                gene_name: DPF2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 89 percent done.
DPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
Cons ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
KS ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
DPH1   10000 perm   2 sec   (6422 perm/sec)   p_kst 6.804000e-01   p_cons 8.114000e-01   p_joint 9.143000e-01

Outputting figure to mutsig2_images.part000000000052/DPH1.2_1380_10000_0.6804_0.8114_0.9143.png
                gene_name: DPH1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 91 percent done.
DPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
DPH2   10000 perm   1 sec   (6693 perm/sec)   p_kst 1.240000e-02   p_cons 6.200000e-01   p_joint 1.539000e-01

Joint ci ratio: 3.333741e-02	ci left: 4.018757e-01	ci right 4.155509e-01	k: 8174	n:20000
Cons ci ratio: 2.097558e-02	ci left: 6.291368e-01	ci right 6.425237e-01	k: 12717	n:20000
KS ci ratio: 2.473661e-01	ci left: 1.086559e-02	ci right 1.397857e-02	k: 247	n:20000
DPH2   20000 perm   3 sec   (5806 perm/sec)   p_kst 1.235000e-02   p_cons 6.358500e-01   p_joint 4.087000e-01

Joint ci ratio: 2.982796e-02	ci left: 3.598811e-01	ci right 3.708117e-01	k: 10960	n:30000
Cons ci ratio: 1.706825e-02	ci left: 6.319636e-01	ci right 6.428765e-01	k: 19123	n:30000
KS ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
DPH2   30000 perm   5 sec   (5472 perm/sec)   p_kst 1.183333e-02   p_cons 6.374333e-01   p_joint 3.653333e-01

Joint ci ratio: 1.602208e-02	ci left: 5.946034e-01	ci right 6.042322e-01	k: 23977	n:40000
Cons ci ratio: 1.477392e-02	ci left: 6.329421e-01	ci right 6.423879e-01	k: 25507	n:40000
KS ci ratio: 1.795553e-01	ci left: 1.071704e-02	ci right 1.285471e-02	k: 470	n:40000
DPH2   40000 perm   8 sec   (5245 perm/sec)   p_kst 1.175000e-02   p_cons 6.376750e-01   p_joint 5.994250e-01

Joint ci ratio: 1.992101e-02	ci left: 4.320668e-01	ci right 4.407806e-01	k: 21821	n:50000
Cons ci ratio: 1.317011e-02	ci left: 6.349927e-01	ci right 6.434311e-01	k: 31961	n:50000
KS ci ratio: 1.623882e-01	ci left: 1.058390e-02	ci right 1.247345e-02	k: 575	n:50000
DPH2   50000 perm   10 sec   (5073 perm/sec)   p_kst 1.150000e-02   p_cons 6.392200e-01   p_joint 4.364200e-01

Joint ci ratio: 2.864032e-02	ci left: 2.345140e-01	ci right 2.413447e-01	k: 14275	n:60000
Cons ci ratio: 1.203142e-02	ci left: 6.350250e-01	ci right 6.427282e-01	k: 38333	n:60000
KS ci ratio: 1.489169e-01	ci left: 1.056592e-02	ci right 1.228183e-02	k: 684	n:60000
DPH2   60000 perm   12 sec   (4926 perm/sec)   p_kst 1.140000e-02   p_cons 6.388833e-01   p_joint 2.379167e-01

Joint ci ratio: 2.493553e-02	ci left: 2.576640e-01	ci right 2.641844e-01	k: 18264	n:70000
Cons ci ratio: 1.114649e-02	ci left: 6.349997e-01	ci right 6.421317e-01	k: 44700	n:70000
KS ci ratio: 1.379723e-01	ci left: 1.061293e-02	ci right 1.219939e-02	k: 797	n:70000
DPH2   70000 perm   15 sec   (4801 perm/sec)   p_kst 1.138571e-02   p_cons 6.385714e-01   p_joint 2.609143e-01

Joint ci ratio: 2.375238e-02	ci left: 2.509614e-01	ci right 2.570064e-01	k: 20318	n:80000
Cons ci ratio: 1.043301e-02	ci left: 6.349467e-01	ci right 6.416183e-01	k: 51063	n:80000
KS ci ratio: 1.290614e-01	ci left: 1.066377e-02	ci right 1.214698e-02	k: 911	n:80000
DPH2   80000 perm   17 sec   (4697 perm/sec)   p_kst 1.138750e-02   p_cons 6.382875e-01   p_joint 2.539750e-01

Joint ci ratio: 2.236241e-02	ci left: 2.516677e-01	ci right 2.573703e-01	k: 22906	n:90000
Cons ci ratio: 9.842003e-03	ci left: 6.348726e-01	ci right 6.411630e-01	k: 57422	n:90000
KS ci ratio: 1.225900e-01	ci left: 1.054425e-02	ci right 1.193196e-02	k: 1010	n:90000
DPH2   90000 perm   20 sec   (4597 perm/sec)   p_kst 1.122222e-02   p_cons 6.380222e-01   p_joint 2.545111e-01

Joint ci ratio: 2.247194e-02	ci left: 2.306715e-01	ci right 2.359240e-01	k: 23329	n:100000
Cons ci ratio: 9.346703e-03	ci left: 6.345516e-01	ci right 6.405204e-01	k: 63754	n:100000
KS ci ratio: 1.166850e-01	ci left: 1.050840e-02	ci right 1.182018e-02	k: 1115	n:100000
DPH2   100000 perm   22 sec   (4498 perm/sec)   p_kst 1.115000e-02   p_cons 6.375400e-01   p_joint 2.332900e-01

Joint ci ratio: 2.326168e-02	ci left: 2.027986e-01	ci right 2.075806e-01	k: 22570	n:110000
Cons ci ratio: 8.907778e-03	ci left: 6.348969e-01	ci right 6.405868e-01	k: 70152	n:110000
KS ci ratio: 1.109626e-01	ci left: 1.059532e-02	ci right 1.184884e-02	k: 1233	n:110000
DPH2   110000 perm   25 sec   (4404 perm/sec)   p_kst 1.120909e-02   p_cons 6.377455e-01   p_joint 2.051818e-01

Joint ci ratio: 2.776090e-02	ci left: 1.405018e-01	ci right 1.444655e-01	k: 17097	n:120000
Cons ci ratio: 8.523241e-03	ci left: 6.353068e-01	ci right 6.407532e-01	k: 76564	n:120000
KS ci ratio: 1.064862e-01	ci left: 1.057168e-02	ci right 1.176878e-02	k: 1339	n:120000
DPH2   120000 perm   28 sec   (4312 perm/sec)   p_kst 1.115833e-02   p_cons 6.380333e-01   p_joint 1.424750e-01

Joint ci ratio: 2.681023e-02	ci left: 1.393265e-01	ci right 1.431203e-01	k: 18358	n:130000
Cons ci ratio: 8.190007e-03	ci left: 6.353499e-01	ci right 6.405824e-01	k: 82936	n:130000
KS ci ratio: 1.026189e-01	ci left: 1.053006e-02	ci right 1.167652e-02	k: 1442	n:130000
DPH2   130000 perm   31 sec   (4232 perm/sec)   p_kst 1.109231e-02   p_cons 6.379692e-01   p_joint 1.412154e-01

Joint ci ratio: 2.575256e-02	ci left: 1.401683e-01	ci right 1.438322e-01	k: 19879	n:140000
Cons ci ratio: 7.887661e-03	ci left: 6.357051e-01	ci right 6.407463e-01	k: 89352	n:140000
KS ci ratio: 9.888610e-02	ci left: 1.055079e-02	ci right 1.165531e-02	k: 1553	n:140000
DPH2   140000 perm   34 sec   (4153 perm/sec)   p_kst 1.109286e-02   p_cons 6.382286e-01   p_joint 1.419929e-01

Outputting figure to mutsig2_images.part000000000052/DPH2.2_1494_140000_0.011093_0.63823_0.14199.png
                gene_name: DPH2
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 93 percent done.
DPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385131e-02	ci left: 7.209804e-01	ci right 7.384856e-01	k: 7298	n:10000
Cons ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
DPPA2   10000 perm   1 sec   (6747 perm/sec)   p_kst 7.527000e-01   p_cons 1.703000e-01   p_joint 7.298000e-01

Outputting figure to mutsig2_images.part000000000052/DPPA2.2_925_10000_0.7527_0.1703_0.7298.png
                gene_name: DPPA2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 95 percent done.
DPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
DPT   10000 perm   1 sec   (7356 perm/sec)   p_kst 3.479000e-01   p_cons 2.458000e-01   p_joint 1.177000e-01

Joint ci ratio: 7.061667e-02	ci left: 1.287656e-01	ci right 1.382412e-01	k: 2669	n:20000
Cons ci ratio: 4.837726e-02	ci left: 2.411343e-01	ci right 2.531393e-01	k: 4942	n:20000
KS ci ratio: 3.852480e-02	ci left: 3.344784e-01	ci right 3.476678e-01	k: 6821	n:20000
DPT   20000 perm   3 sec   (6314 perm/sec)   p_kst 3.410500e-01   p_cons 2.471000e-01   p_joint 1.334500e-01

Outputting figure to mutsig2_images.part000000000052/DPT.2_622_20000_0.34105_0.2471_0.13345.png
                gene_name: DPT
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
DPY19L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
KS ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
DPY19L4   10000 perm   2 sec   (5911 perm/sec)   p_kst 1.326000e-01   p_cons 3.806000e-01   p_joint 2.446000e-01

Joint ci ratio: 5.059497e-02	ci left: 2.249750e-01	ci right 2.367033e-01	k: 4616	n:20000
Cons ci ratio: 3.617725e-02	ci left: 3.631537e-01	ci right 3.765842e-01	k: 7397	n:20000
KS ci ratio: 7.090811e-02	ci left: 1.278300e-01	ci right 1.372771e-01	k: 2650	n:20000
DPY19L4   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.325000e-01   p_cons 3.698500e-01   p_joint 2.308000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L4.2_2248_20000_0.1325_0.36985_0.2308.png
                gene_name: DPY19L4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
DRAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
Cons ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
DRAM2   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.840000e-01   p_cons 5.543000e-01   p_joint 5.730000e-01

Outputting figure to mutsig2_images.part000000000052/DRAM2.2_829_10000_0.584_0.5543_0.573.png
                gene_name: DRAM2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000052
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 52 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4421895: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000053> was used as the working directory.
Started at Wed Oct 24 17:39:41 2012
Results reported at Wed Oct 24 18:36:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000053.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000053.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 53  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000053.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2705.43 sec.
    Max Memory :      5352 MB
    Max Swap   :      7644 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
53
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 53
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 53: processing genes 4705 - 4795
Calculating significance of each gene.
Using projection method.
4705	DRD2	2.661768e-02
4706	DRD3	7.389884e-01
4707	DRD4	1
4708	DRD5	1
4709	DRG1	1
4710	DRG2	7.100356e-01
4711	DRGX	1.099891e-01
4712	DRP2	7.008242e-01
4713	DSC1	9.350482e-01
4714	DSC2	6.828307e-01
4715	DSC3	8.016140e-01
4716	DSCAM	9.567288e-01
4717	DSCAML1	9.989901e-01
4718	DSCC1	1
4719	DSCR3	1
4720	DSCR4	1
4721	DSCR6	4.947123e-01
4722	DSE	2.067936e-02
4723	DSEL	9.872918e-01
4724	DSG1	9.182320e-01
4725	DSG2	9.877288e-01
4726	DSG3	9.457172e-01
4727	DSG4	9.838445e-01
4728	DSN1	1.164003e-01
4729	DSP	1
4730	DSPP	2.398163e-01
4731	DST	1
4732	DSTN	6.035115e-01
4733	DSTYK	8.888989e-01
4734	DTD1	1
4735	DTL	1
4736	DTNA	1.922925e-03
4737	DTNB	7.811219e-01
4738	DTNBP1	5.438372e-01
4739	DTWD1	7.648337e-01
4740	DTWD2	7.012827e-01
4741	DTX1	4.829384e-01
4742	DTX2	1
4743	DTX3	7.400011e-02
4744	DTX3L	9.550727e-01
4745	DTX4	1
4746	DTYMK	3.896726e-01
4747	DULLARD	5.963157e-01
4748	DUOX1	9.755420e-01
4749	DUOX2	3.299883e-01
4750	DUOXA1	8.468273e-01
4751	DUOXA2	9.394809e-01
4752	DUPD1	8.550359e-01
4753	DUS1L	1
4754	DUS2L	2.336802e-01
4755	DUS3L	9.210968e-01
4756	DUS4L	1
4757	DUSP1	1
4758	DUSP10	3.048924e-01
4759	DUSP11	6.019892e-01
4760	DUSP12	8.663695e-01
4761	DUSP13	1
4762	DUSP14	5.155205e-01
4763	DUSP15	3.365376e-01
4764	DUSP16	9.241500e-01
4765	DUSP18	1
4766	DUSP19	2.257937e-01
4767	DUSP2	5.046068e-01
4768	DUSP21	1
4769	DUSP22	8.222737e-02
4770	DUSP23	1
4771	DUSP26	6.781316e-01
4772	DUSP27	7.686837e-01
4773	DUSP28	2.809354e-01
4774	DUSP3	1
4775	DUSP4	1
4776	DUSP5	1
4777	DUSP6	3.250766e-01
4778	DUSP7	4.896404e-01
4779	DUSP8	7.082695e-01
4780	DUSP9	1
4781	DUT	1
4782	DUXA	3.140864e-01
4783	DVL1	9.648039e-01
4784	DVL2	9.832947e-01
4785	DVL3	7.031174e-01
4786	DYDC1	1
4787	DYDC2	3.166866e-02
4788	DYM	7.645068e-01
4789	DYNC1H1	9.999984e-01
4790	DYNC1I1	1
4791	DYNC1I2	1
4792	DYNC1LI1	7.624477e-01
4793	DYNC1LI2	1
4794	DYNC2H1	9.999998e-01
4795	DYNC2LI1	7.514054e-02
Done

Running MutSig 2:
Scatter job 53: processing genes 4705 - 4795
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DST
Processing conservation and coverage...
48% 97% 
Processing mutations... 
Skipping 5 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
Cons ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
KS ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
DST   10000 perm   5 sec   (1863 perm/sec)   p_kst 1.423000e-01   p_cons 1.290000e-02   p_joint 8.300000e-03

Joint ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
Cons ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
KS ci ratio: 6.842904e-02	ci left: 1.361056e-01	ci right 1.457990e-01	k: 2818	n:20000
DST   20000 perm   13 sec   (1499 perm/sec)   p_kst 1.409000e-01   p_cons 1.515000e-02   p_joint 1.410000e-02

Joint ci ratio: 1.075544e-01	ci left: 4.011513e-02	ci right 4.470736e-02	k: 1271	n:30000
Cons ci ratio: 1.682762e-01	ci left: 1.627003e-02	ci right 1.929105e-02	k: 532	n:30000
KS ci ratio: 5.553269e-02	ci left: 1.384637e-01	ci right 1.464057e-01	k: 4272	n:30000
DST   30000 perm   19 sec   (1605 perm/sec)   p_kst 1.424000e-01   p_cons 1.773333e-02   p_joint 4.236667e-02

Joint ci ratio: 9.515489e-02	ci left: 3.876009e-02	ci right 4.265695e-02	k: 1627	n:40000
Cons ci ratio: 1.433544e-01	ci left: 1.703317e-02	ci right 1.968741e-02	k: 733	n:40000
KS ci ratio: 4.810434e-02	ci left: 1.389394e-01	ci right 1.458126e-01	k: 5694	n:40000
DST   40000 perm   24 sec   (1686 perm/sec)   p_kst 1.423500e-01   p_cons 1.832500e-02   p_joint 4.067500e-02

Joint ci ratio: 9.361401e-02	ci left: 3.229175e-02	ci right 3.548266e-02	k: 1693	n:50000
Cons ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
KS ci ratio: 4.283229e-02	ci left: 1.403982e-01	ci right 1.465633e-01	k: 7173	n:50000
DST   50000 perm   29 sec   (1752 perm/sec)   p_kst 1.434600e-01   p_cons 1.780000e-02   p_joint 3.386000e-02

Joint ci ratio: 8.761773e-02	ci left: 3.086706e-02	ci right 3.371174e-02	k: 1936	n:60000
Cons ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
KS ci ratio: 3.917960e-02	ci left: 1.401748e-01	ci right 1.457931e-01	k: 8578	n:60000
DST   60000 perm   33 sec   (1796 perm/sec)   p_kst 1.429667e-01   p_cons 1.815000e-02   p_joint 3.226667e-02

Joint ci ratio: 8.827261e-02	ci left: 2.618918e-02	ci right 2.862164e-02	k: 1917	n:70000
Cons ci ratio: 1.228228e-01	ci left: 1.346123e-02	ci right 1.523650e-02	k: 1003	n:70000
KS ci ratio: 3.614032e-02	ci left: 1.412792e-01	ci right 1.464932e-01	k: 10071	n:70000
DST   70000 perm   38 sec   (1825 perm/sec)   p_kst 1.438714e-01   p_cons 1.432857e-02   p_joint 2.738571e-02

Joint ci ratio: 8.968147e-02	ci left: 2.227794e-02	ci right 2.438182e-02	k: 1865	n:80000
Cons ci ratio: 1.143571e-01	ci left: 1.364660e-02	ci right 1.531389e-02	k: 1157	n:80000
KS ci ratio: 3.376485e-02	ci left: 1.417476e-01	ci right 1.466283e-01	k: 11534	n:80000
DST   80000 perm   43 sec   (1845 perm/sec)   p_kst 1.441750e-01   p_cons 1.446250e-02   p_joint 2.331250e-02

Joint ci ratio: 8.643122e-02	ci left: 2.137781e-02	ci right 2.331981e-02	k: 2010	n:90000
Cons ci ratio: 1.079326e-01	ci left: 1.366425e-02	ci right 1.523394e-02	k: 1299	n:90000
KS ci ratio: 3.187239e-02	ci left: 1.415908e-01	ci right 1.461877e-01	k: 12949	n:90000
DST   90000 perm   48 sec   (1859 perm/sec)   p_kst 1.438778e-01   p_cons 1.443333e-02   p_joint 2.233333e-02

Joint ci ratio: 8.476183e-02	ci left: 2.005168e-02	ci right 2.183626e-02	k: 2093	n:100000
Cons ci ratio: 1.021947e-01	ci left: 1.375846e-02	ci right 1.524990e-02	k: 1449	n:100000
KS ci ratio: 3.021583e-02	ci left: 1.418790e-01	ci right 1.462417e-01	k: 14405	n:100000
DST   100000 perm   54 sec   (1859 perm/sec)   p_kst 1.440500e-01   p_cons 1.449000e-02   p_joint 2.093000e-02

Joint ci ratio: 7.796762e-02	ci left: 2.158707e-02	ci right 2.334732e-02	k: 2470	n:110000
Cons ci ratio: 9.778155e-02	ci left: 1.369539e-02	ci right 1.511220e-02	k: 1583	n:110000
KS ci ratio: 2.884009e-02	ci left: 1.417223e-01	ci right 1.458784e-01	k: 15817	n:110000
DST   110000 perm   59 sec   (1864 perm/sec)   p_kst 1.437909e-01   p_cons 1.439091e-02   p_joint 2.245455e-02

Outputting figure to mutsig2_images.part000000000053/DST.35_20492_110000_0.14379_0.014391_0.022455.png
                gene_name: DST
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 2 percent done.
DUSP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
DUSP27   10000 perm   4 sec   (2772 perm/sec)   p_kst 5.081000e-01   p_cons 6.920000e-02   p_joint 1.810000e-01

Joint ci ratio: 6.993803e-02	ci left: 1.309819e-01	ci right 1.405243e-01	k: 2714	n:20000
Cons ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
KS ci ratio: 2.743251e-02	ci left: 4.981955e-01	ci right 5.121030e-01	k: 10103	n:20000
DUSP27   20000 perm   9 sec   (2270 perm/sec)   p_kst 5.051500e-01   p_cons 6.775000e-02   p_joint 1.357000e-01

Joint ci ratio: 5.122864e-02	ci left: 1.591003e-01	ci right 1.674983e-01	k: 4898	n:30000
Cons ci ratio: 8.332699e-02	ci left: 6.583024e-02	ci right 7.158696e-02	k: 2060	n:30000
KS ci ratio: 2.323342e-02	ci left: 4.811955e-01	ci right 4.925404e-01	k: 14606	n:30000
DUSP27   30000 perm   14 sec   (2121 perm/sec)   p_kst 4.868667e-01   p_cons 6.866667e-02   p_joint 1.632667e-01

Outputting figure to mutsig2_images.part000000000053/DUSP27.22_3497_30000_0.48687_0.068667_0.16327.png
                gene_name: DUSP27
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 4 percent done.
DYNC1H1
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
DYNC1H1   10000 perm   9 sec   (1162 perm/sec)   p_kst 5.457000e-01   p_cons 9.200000e-02   p_joint 2.230000e-01

Joint ci ratio: 4.076656e-02	ci left: 3.096583e-01	ci right 3.225952e-01	k: 6322	n:20000
Cons ci ratio: 7.750332e-02	ci left: 1.089878e-01	ci right 1.178249e-01	k: 2267	n:20000
KS ci ratio: 2.499743e-02	ci left: 5.445252e-01	ci right 5.583598e-01	k: 11029	n:20000
DYNC1H1   20000 perm   20 sec   (991 perm/sec)   p_kst 5.514500e-01   p_cons 1.133500e-01   p_joint 3.161000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1H1.19_14253_20000_0.55145_0.11335_0.3161.png
                gene_name: DYNC1H1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 5 percent done.
DYNC2H1
Processing conservation and coverage...
75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
Cons ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
KS ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
DYNC2H1   10000 perm   7 sec   (1490 perm/sec)   p_kst 2.099000e-01   p_cons 8.510000e-02   p_joint 1.807000e-01

Joint ci ratio: 6.936269e-02	ci left: 1.329030e-01	ci right 1.425026e-01	k: 2753	n:20000
Cons ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
KS ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
DYNC2H1   20000 perm   19 sec   (1058 perm/sec)   p_kst 2.184500e-01   p_cons 8.420000e-02   p_joint 1.376500e-01

Outputting figure to mutsig2_images.part000000000053/DYNC2H1.19_13305_20000_0.21845_0.0842_0.13765.png
                gene_name: DYNC2H1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 7 percent done.
DSCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
DSCAM   10000 perm   4 sec   (2254 perm/sec)   p_kst 5.590000e-02   p_cons 1.078000e-01   p_joint 4.450000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 7.878237e-02	ci left: 1.057938e-01	ci right 1.145199e-01	k: 2202	n:20000
KS ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
DSCAM   20000 perm   13 sec   (1534 perm/sec)   p_kst 5.365000e-02   p_cons 1.101000e-01   p_joint 3.490000e-02

Joint ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
Cons ci ratio: 6.375818e-02	ci left: 1.083209e-01	ci right 1.154878e-01	k: 3356	n:30000
KS ci ratio: 9.630694e-02	ci left: 4.980752e-02	ci right 5.487962e-02	k: 1569	n:30000
DSCAM   30000 perm   22 sec   (1365 perm/sec)   p_kst 5.230000e-02   p_cons 1.118667e-01   p_joint 3.000000e-02

Joint ci ratio: 1.370237e-01	ci left: 1.867461e-02	ci right 2.144568e-02	k: 801	n:40000
Cons ci ratio: 6.011915e-02	ci left: 9.317928e-02	ci right 9.897951e-02	k: 3842	n:40000
KS ci ratio: 8.334856e-02	ci left: 5.021183e-02	ci right 5.460343e-02	k: 2095	n:40000
DSCAM   40000 perm   32 sec   (1266 perm/sec)   p_kst 5.237500e-02   p_cons 9.605000e-02   p_joint 2.002500e-02

Joint ci ratio: 9.215981e-02	ci left: 3.330840e-02	ci right 3.654589e-02	k: 1745	n:50000
Cons ci ratio: 5.160554e-02	ci left: 1.007838e-01	ci right 1.061424e-01	k: 5172	n:50000
KS ci ratio: 7.399959e-02	ci left: 5.117019e-02	ci right 5.512190e-02	k: 2656	n:50000
DSCAM   50000 perm   41 sec   (1217 perm/sec)   p_kst 5.312000e-02   p_cons 1.034400e-01   p_joint 3.490000e-02

Outputting figure to mutsig2_images.part000000000053/DSCAM.17_6171_50000_0.05312_0.10344_0.0349.png
                gene_name: DSCAM
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.037 

Current progress: 9 percent done.
DSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
Cons ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
KS ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
DSG1   10000 perm   12 sec   (859 perm/sec)   p_kst 7.059000e-01   p_cons 8.430000e-02   p_joint 2.714000e-01

Joint ci ratio: 3.901843e-02	ci left: 3.288063e-01	ci right 3.419416e-01	k: 6707	n:20000
Cons ci ratio: 8.399665e-02	ci left: 9.406032e-02	ci right 1.023569e-01	k: 1963	n:20000
KS ci ratio: 1.777910e-02	ci left: 7.021467e-01	ci right 7.147926e-01	k: 14170	n:20000
DSG1   20000 perm   20 sec   (1004 perm/sec)   p_kst 7.085000e-01   p_cons 9.815000e-02   p_joint 3.353500e-01

Outputting figure to mutsig2_images.part000000000053/DSG1.16_3210_20000_0.7085_0.09815_0.33535.png
                gene_name: DSG1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 11 percent done.
DSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
Cons ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
KS ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
DSG3   10000 perm   10 sec   (973 perm/sec)   p_kst 8.268000e-01   p_cons 1.399000e-01   p_joint 4.606000e-01

Outputting figure to mutsig2_images.part000000000053/DSG3.16_3064_10000_0.8268_0.1399_0.4606.png
                gene_name: DSG3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 12 percent done.
DSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.541083e-02	ci left: 6.950453e-01	ci right 7.130357e-01	k: 7041	n:10000
Cons ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
DSG4   10000 perm   7 sec   (1418 perm/sec)   p_kst 5.741000e-01   p_cons 9.141000e-01   p_joint 7.041000e-01

Outputting figure to mutsig2_images.part000000000053/DSG4.16_3308_10000_0.5741_0.9141_0.7041.png
                gene_name: DSG4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 14 percent done.
DTNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
Cons ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
KS ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
DTNA   10000 perm   2 sec   (4115 perm/sec)   p_kst 3.875000e-01   p_cons 6.950000e-01   p_joint 5.671000e-01

Outputting figure to mutsig2_images.part000000000053/DTNA.14_2406_10000_0.3875_0.695_0.5671.png
                gene_name: DTNA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 16 percent done.
DUOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
Cons ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
KS ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
DUOX2   10000 perm   5 sec   (2059 perm/sec)   p_kst 8.251000e-01   p_cons 4.172000e-01   p_joint 7.516000e-01

Outputting figure to mutsig2_images.part000000000053/DUOX2.14_4779_10000_0.8251_0.4172_0.7516.png
                gene_name: DUOX2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 18 percent done.
DSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
Cons ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
KS ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
DSC3   10000 perm   7 sec   (1474 perm/sec)   p_kst 2.601000e-01   p_cons 4.287000e-01   p_joint 4.242000e-01

Outputting figure to mutsig2_images.part000000000053/DSC3.13_2786_10000_0.2601_0.4287_0.4242.png
                gene_name: DSC3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 19 percent done.
DSCAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
Cons ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
KS ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
DSCAML1   10000 perm   4 sec   (2251 perm/sec)   p_kst 4.943000e-01   p_cons 5.618000e-01   p_joint 6.608000e-01

Outputting figure to mutsig2_images.part000000000053/DSCAML1.12_6474_10000_0.4943_0.5618_0.6608.png
                gene_name: DSCAML1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 21 percent done.
DSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
Cons ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
KS ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
DSC1   10000 perm   2 sec   (4339 perm/sec)   p_kst 1.312000e-01   p_cons 3.651000e-01   p_joint 1.907000e-01

Joint ci ratio: 5.393203e-02	ci left: 2.032836e-01	ci right 2.146011e-01	k: 4178	n:20000
Cons ci ratio: 3.764581e-02	ci left: 3.448801e-01	ci right 3.581631e-01	k: 7030	n:20000
KS ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
DSC1   20000 perm   10 sec   (1964 perm/sec)   p_kst 1.277500e-01   p_cons 3.515000e-01   p_joint 2.089000e-01

Outputting figure to mutsig2_images.part000000000053/DSC1.10_2789_20000_0.12775_0.3515_0.2089.png
                gene_name: DSC1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
DSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
KS ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
DSE   10000 perm   3 sec   (2920 perm/sec)   p_kst 7.911000e-01   p_cons 8.513000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DSE.10_2897_10000_0.7911_0.8513_1.png
                gene_name: DSE
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
DYNC1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
Cons ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
KS ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
DYNC1I1   10000 perm   2 sec   (4869 perm/sec)   p_kst 2.141000e-01   p_cons 4.566000e-01   p_joint 3.098000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1I1.10_2002_10000_0.2141_0.4566_0.3098.png
                gene_name: DYNC1I1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
DRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
Cons ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
KS ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
DRD2   10000 perm   2 sec   (4954 perm/sec)   p_kst 2.751000e-01   p_cons 4.216000e-01   p_joint 2.862000e-01

Outputting figure to mutsig2_images.part000000000053/DRD2.9_1360_10000_0.2751_0.4216_0.2862.png
                gene_name: DRD2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 28 percent done.
DRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
KS ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
DRD3   10000 perm   3 sec   (3693 perm/sec)   p_kst 8.524000e-01   p_cons 6.465000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DRD3.9_1227_10000_0.8524_0.6465_1.png
                gene_name: DRD3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
DRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
KS ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
DRD5   10000 perm   2 sec   (5914 perm/sec)   p_kst 6.402000e-01   p_cons 3.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DRD5.9_1438_10000_0.6402_0.373_1.png
                gene_name: DRD5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
DSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
Cons ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
KS ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
DSG2   10000 perm   2 sec   (5126 perm/sec)   p_kst 2.513000e-01   p_cons 6.399000e-01   p_joint 3.765000e-01

Outputting figure to mutsig2_images.part000000000053/DSG2.8_3417_10000_0.2513_0.6399_0.3765.png
                gene_name: DSG2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 33 percent done.
DSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
Cons ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
KS ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
DSP   10000 perm   2 sec   (4244 perm/sec)   p_kst 3.430000e-02   p_cons 1.535000e-01   p_joint 4.860000e-02

Joint ci ratio: 1.249523e-01	ci left: 4.396240e-02	ci right 4.987023e-02	k: 937	n:20000
Cons ci ratio: 6.486688e-02	ci left: 1.493685e-01	ci right 1.594322e-01	k: 3087	n:20000
KS ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
DSP   20000 perm   5 sec   (3827 perm/sec)   p_kst 3.670000e-02   p_cons 1.543500e-01   p_joint 4.685000e-02

Joint ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
Cons ci ratio: 5.315398e-02	ci left: 1.493721e-01	ci right 1.575618e-01	k: 4603	n:30000
KS ci ratio: 1.168889e-01	ci left: 3.401751e-02	ci right 3.827293e-02	k: 1083	n:30000
DSP   30000 perm   8 sec   (3723 perm/sec)   p_kst 3.610000e-02   p_cons 1.534333e-01   p_joint 4.626667e-02

Joint ci ratio: 9.176932e-02	ci left: 4.161954e-02	ci right 4.564705e-02	k: 1744	n:40000
Cons ci ratio: 4.585062e-02	ci left: 1.509460e-01	ci right 1.580543e-01	k: 6179	n:40000
KS ci ratio: 1.025366e-01	ci left: 3.343973e-02	ci right 3.707814e-02	k: 1409	n:40000
DSP   40000 perm   11 sec   (3641 perm/sec)   p_kst 3.522500e-02   p_cons 1.544750e-01   p_joint 4.360000e-02

Joint ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
Cons ci ratio: 4.181991e-02	ci left: 1.463254e-01	ci right 1.525953e-01	k: 7472	n:50000
KS ci ratio: 9.151010e-02	ci left: 3.377775e-02	ci right 3.703648e-02	k: 1769	n:50000
DSP   50000 perm   14 sec   (3588 perm/sec)   p_kst 3.538000e-02   p_cons 1.494400e-01   p_joint 2.760000e-02

Joint ci ratio: 9.662172e-02	ci left: 2.540844e-02	ci right 2.800428e-02	k: 1601	n:60000
Cons ci ratio: 3.739881e-02	ci left: 1.518645e-01	ci right 1.576689e-01	k: 9285	n:60000
KS ci ratio: 8.400973e-02	ci left: 3.354368e-02	ci right 3.650152e-02	k: 2100	n:60000
DSP   60000 perm   17 sec   (3547 perm/sec)   p_kst 3.500000e-02   p_cons 1.547500e-01   p_joint 2.668333e-02

Outputting figure to mutsig2_images.part000000000053/DSP.8_8712_60000_0.035_0.15475_0.026683.png
                gene_name: DSP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 35 percent done.
DUSP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
KS ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
DUSP22   10000 perm   2 sec   (5998 perm/sec)   p_kst 1.419000e-01   p_cons 4.400000e-03   p_joint 2.270000e-02

Joint ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
Cons ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
KS ci ratio: 6.824597e-02	ci left: 1.367463e-01	ci right 1.464582e-01	k: 2831	n:20000
DUSP22   20000 perm   4 sec   (5564 perm/sec)   p_kst 1.415500e-01   p_cons 3.700000e-03   p_joint 1.550000e-02

Joint ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
Cons ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
KS ci ratio: 5.557061e-02	ci left: 1.382989e-01	ci right 1.462371e-01	k: 4267	n:30000
DUSP22   30000 perm   6 sec   (5424 perm/sec)   p_kst 1.422333e-01   p_cons 3.300000e-03   p_joint 1.333333e-02

Joint ci ratio: 1.564608e-01	ci left: 1.424009e-02	ci right 1.668099e-02	k: 617	n:40000
Cons ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
KS ci ratio: 4.802571e-02	ci left: 1.393354e-01	ci right 1.462166e-01	k: 5710	n:40000
DUSP22   40000 perm   8 sec   (5304 perm/sec)   p_kst 1.427500e-01   p_cons 3.200000e-03   p_joint 1.542500e-02

Joint ci ratio: 1.613990e-01	ci left: 1.071829e-02	ci right 1.261904e-02	k: 582	n:50000
Cons ci ratio: 2.773251e-01	ci left: 3.428477e-03	ci right 4.550319e-03	k: 198	n:50000
KS ci ratio: 4.303912e-02	ci left: 1.392288e-01	ci right 1.453728e-01	k: 7114	n:50000
DUSP22   50000 perm   10 sec   (5197 perm/sec)   p_kst 1.422800e-01   p_cons 3.960000e-03   p_joint 1.164000e-02

Joint ci ratio: 1.109887e-01	ci left: 1.923514e-02	ci right 2.151158e-02	k: 1221	n:60000
Cons ci ratio: 2.439966e-01	ci left: 3.760892e-03	ci right 4.821271e-03	k: 256	n:60000
KS ci ratio: 3.935372e-02	ci left: 1.391004e-01	ci right 1.447010e-01	k: 8513	n:60000
DUSP22   60000 perm   12 sec   (5095 perm/sec)   p_kst 1.418833e-01   p_cons 4.266667e-03   p_joint 2.035000e-02

Joint ci ratio: 1.355032e-01	ci left: 1.101319e-02	ci right 1.262765e-02	k: 826	n:70000
Cons ci ratio: 2.367844e-01	ci left: 3.438357e-03	ci right 4.374932e-03	k: 272	n:70000
KS ci ratio: 3.650734e-02	ci left: 1.388266e-01	ci right 1.440032e-01	k: 9898	n:70000
DUSP22   70000 perm   14 sec   (5006 perm/sec)   p_kst 1.414000e-01   p_cons 3.885714e-03   p_joint 1.180000e-02

Joint ci ratio: 1.270338e-01	ci left: 1.101478e-02	ci right 1.252094e-02	k: 940	n:80000
Cons ci ratio: 2.214917e-01	ci left: 3.468112e-03	ci right 4.343470e-03	k: 311	n:80000
KS ci ratio: 3.422909e-02	ci left: 1.384338e-01	ci right 1.432672e-01	k: 11267	n:80000
DUSP22   80000 perm   16 sec   (4941 perm/sec)   p_kst 1.408375e-01   p_cons 3.887500e-03   p_joint 1.175000e-02

Joint ci ratio: 1.239613e-01	ci left: 1.030727e-02	ci right 1.168008e-02	k: 988	n:90000
Cons ci ratio: 2.109468e-01	ci left: 3.419066e-03	ci right 4.235649e-03	k: 343	n:90000
KS ci ratio: 3.221607e-02	ci left: 1.389862e-01	ci right 1.435481e-01	k: 12713	n:90000
DUSP22   90000 perm   18 sec   (4878 perm/sec)   p_kst 1.412556e-01   p_cons 3.811111e-03   p_joint 1.097778e-02

Joint ci ratio: 1.121485e-01	ci left: 1.139265e-02	ci right 1.275587e-02	k: 1206	n:100000
Cons ci ratio: 2.009739e-01	ci left: 3.409114e-03	ci right 4.180107e-03	k: 378	n:100000
KS ci ratio: 3.061545e-02	ci left: 1.386894e-01	ci right 1.430114e-01	k: 14084	n:100000
DUSP22   100000 perm   21 sec   (4815 perm/sec)   p_kst 1.408400e-01   p_cons 3.780000e-03   p_joint 1.206000e-02

Joint ci ratio: 1.023704e-01	ci left: 1.248069e-02	ci right 1.383607e-02	k: 1446	n:110000
Cons ci ratio: 1.934700e-01	ci left: 3.358449e-03	ci right 4.086284e-03	k: 408	n:110000
KS ci ratio: 2.923629e-02	ci left: 1.384152e-01	ci right 1.425310e-01	k: 15451	n:110000
DUSP22   110000 perm   23 sec   (4751 perm/sec)   p_kst 1.404636e-01   p_cons 3.709091e-03   p_joint 1.314545e-02

Joint ci ratio: 9.719028e-02	ci left: 1.272453e-02	ci right 1.403248e-02	k: 1604	n:120000
Cons ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
KS ci ratio: 2.801456e-02	ci left: 1.383064e-01	ci right 1.422443e-01	k: 16832	n:120000
DUSP22   120000 perm   26 sec   (4688 perm/sec)   p_kst 1.402667e-01   p_cons 3.733333e-03   p_joint 1.336667e-02

Joint ci ratio: 8.984866e-02	ci left: 1.378197e-02	ci right 1.508598e-02	k: 1875	n:130000
Cons ci ratio: 1.857163e-01	ci left: 3.098182e-03	ci right 3.739669e-03	k: 443	n:130000
KS ci ratio: 2.691188e-02	ci left: 1.384163e-01	ci right 1.421998e-01	k: 18239	n:130000
DUSP22   130000 perm   28 sec   (4617 perm/sec)   p_kst 1.403000e-01   p_cons 3.407692e-03   p_joint 1.442308e-02

Joint ci ratio: 9.255733e-02	ci left: 1.206414e-02	ci right 1.324188e-02	k: 1770	n:140000
Cons ci ratio: 1.788021e-01	ci left: 3.115482e-03	ci right 3.733938e-03	k: 478	n:140000
KS ci ratio: 2.593838e-02	ci left: 1.384349e-01	ci right 1.420800e-01	k: 19635	n:140000
DUSP22   140000 perm   31 sec   (4552 perm/sec)   p_kst 1.402500e-01   p_cons 3.414286e-03   p_joint 1.264286e-02

Joint ci ratio: 9.392059e-02	ci left: 1.094052e-02	ci right 1.202516e-02	k: 1721	n:150000
Cons ci ratio: 1.660861e-01	ci left: 3.392648e-03	ci right 4.013445e-03	k: 554	n:150000
KS ci ratio: 2.504818e-02	ci left: 1.385991e-01	ci right 1.421214e-01	k: 21053	n:150000
DUSP22   150000 perm   33 sec   (4488 perm/sec)   p_kst 1.403533e-01   p_cons 3.693333e-03   p_joint 1.147333e-02

Joint ci ratio: 8.925262e-02	ci left: 1.138052e-02	ci right 1.244978e-02	k: 1905	n:160000
Cons ci ratio: 1.605402e-01	ci left: 3.414400e-03	ci right 4.016303e-03	k: 593	n:160000
KS ci ratio: 2.428967e-02	ci left: 1.382908e-01	ci right 1.416973e-01	k: 22398	n:160000
DUSP22   160000 perm   36 sec   (4425 perm/sec)   p_kst 1.399875e-01   p_cons 3.706250e-03   p_joint 1.190625e-02

Joint ci ratio: 8.726904e-02	ci left: 1.121726e-02	ci right 1.224656e-02	k: 1993	n:170000
Cons ci ratio: 1.567630e-01	ci left: 3.377364e-03	ci right 3.957412e-03	k: 622	n:170000
KS ci ratio: 2.355290e-02	ci left: 1.384591e-01	ci right 1.417649e-01	k: 23818	n:170000
DUSP22   170000 perm   39 sec   (4361 perm/sec)   p_kst 1.401059e-01   p_cons 3.658824e-03   p_joint 1.172353e-02

Joint ci ratio: 8.685840e-02	ci left: 1.070264e-02	ci right 1.167986e-02	k: 2013	n:180000
Cons ci ratio: 1.521897e-01	ci left: 3.392686e-03	ci right 3.956818e-03	k: 660	n:180000
KS ci ratio: 2.288621e-02	ci left: 1.385383e-01	ci right 1.417511e-01	k: 25225	n:180000
DUSP22   180000 perm   42 sec   (4302 perm/sec)   p_kst 1.401389e-01   p_cons 3.666667e-03   p_joint 1.118333e-02

Joint ci ratio: 9.162290e-02	ci left: 9.104695e-03	ci right 9.984051e-03	k: 1812	n:190000
Cons ci ratio: 1.477826e-01	ci left: 3.416753e-03	ci right 3.966981e-03	k: 700	n:190000
KS ci ratio: 2.231257e-02	ci left: 1.381860e-01	ci right 1.413092e-01	k: 26551	n:190000
DUSP22   190000 perm   45 sec   (4242 perm/sec)   p_kst 1.397421e-01   p_cons 3.684211e-03   p_joint 9.536842e-03

Joint ci ratio: 9.096390e-02	ci left: 8.781311e-03	ci right 9.623007e-03	k: 1839	n:200000
Cons ci ratio: 1.442266e-01	ci left: 3.414523e-03	ci right 3.950021e-03	k: 735	n:200000
KS ci ratio: 2.175235e-02	ci left: 1.381734e-01	ci right 1.412170e-01	k: 27938	n:200000
DUSP22   200000 perm   48 sec   (4183 perm/sec)   p_kst 1.396900e-01   p_cons 3.675000e-03   p_joint 9.195000e-03

Joint ci ratio: 8.976168e-02	ci left: 8.595831e-03	ci right 9.408286e-03	k: 1889	n:210000
Cons ci ratio: 1.401875e-01	ci left: 3.449408e-03	ci right 3.973962e-03	k: 778	n:210000
KS ci ratio: 2.121843e-02	ci left: 1.383194e-01	ci right 1.412905e-01	k: 29358	n:210000
DUSP22   210000 perm   51 sec   (4126 perm/sec)   p_kst 1.398000e-01   p_cons 3.704762e-03   p_joint 8.995238e-03

Joint ci ratio: 7.778020e-02	ci left: 1.096948e-02	ci right 1.186164e-02	k: 2510	n:220000
Cons ci ratio: 1.368882e-01	ci left: 3.459358e-03	ci right 3.972036e-03	k: 816	n:220000
KS ci ratio: 2.073962e-02	ci left: 1.382493e-01	ci right 1.411511e-01	k: 30733	n:220000
DUSP22   220000 perm   54 sec   (4072 perm/sec)   p_kst 1.396955e-01   p_cons 3.709091e-03   p_joint 1.140909e-02

Joint ci ratio: 8.067484e-02	ci left: 9.750760e-03	ci right 1.057470e-02	k: 2336	n:230000
Cons ci ratio: 1.335765e-01	ci left: 3.481184e-03	ci right 3.983624e-03	k: 857	n:230000
KS ci ratio: 2.029403e-02	ci left: 1.381600e-01	ci right 1.409969e-01	k: 32102	n:230000
DUSP22   230000 perm   57 sec   (4021 perm/sec)   p_kst 1.395739e-01   p_cons 3.726087e-03   p_joint 1.015652e-02

Joint ci ratio: 8.266132e-02	ci left: 8.899424e-03	ci right 9.670830e-03	k: 2227	n:240000
Cons ci ratio: 1.310069e-01	ci left: 3.473112e-03	ci right 3.963993e-03	k: 891	n:240000
KS ci ratio: 1.987460e-02	ci left: 1.380954e-01	ci right 1.408717e-01	k: 33475	n:240000
DUSP22   240000 perm   60 sec   (3969 perm/sec)   p_kst 1.394792e-01   p_cons 3.712500e-03   p_joint 9.279167e-03

Joint ci ratio: 8.116496e-02	ci left: 8.868640e-03	ci right 9.622803e-03	k: 2310	n:250000
Cons ci ratio: 1.294246e-01	ci left: 3.419315e-03	ci right 3.896306e-03	k: 913	n:250000
KS ci ratio: 1.946391e-02	ci left: 1.382357e-01	ci right 1.409567e-01	k: 34898	n:250000
DUSP22   250000 perm   64 sec   (3917 perm/sec)   p_kst 1.395920e-01   p_cons 3.652000e-03   p_joint 9.240000e-03

Joint ci ratio: 7.500547e-02	ci left: 1.000604e-02	ci right 1.078954e-02	k: 2702	n:260000
Cons ci ratio: 1.272854e-01	ci left: 3.403203e-03	ci right 3.869508e-03	k: 944	n:260000
KS ci ratio: 1.909663e-02	ci left: 1.381282e-01	ci right 1.407952e-01	k: 36259	n:260000
DUSP22   260000 perm   68 sec   (3848 perm/sec)   p_kst 1.394577e-01   p_cons 3.630769e-03   p_joint 1.039231e-02

Joint ci ratio: 7.554408e-02	ci left: 9.500898e-03	ci right 1.025042e-02	k: 2665	n:270000
Cons ci ratio: 1.248005e-01	ci left: 3.413463e-03	ci right 3.871367e-03	k: 982	n:270000
KS ci ratio: 1.874301e-02	ci left: 1.381103e-01	ci right 1.407271e-01	k: 37642	n:270000
DUSP22   270000 perm   72 sec   (3771 perm/sec)   p_kst 1.394148e-01   p_cons 3.637037e-03   p_joint 9.870370e-03

Joint ci ratio: 7.499160e-02	ci left: 9.301713e-03	ci right 1.002992e-02	k: 2705	n:280000
Cons ci ratio: 1.227578e-01	ci left: 3.405761e-03	ci right 3.854610e-03	k: 1015	n:280000
KS ci ratio: 1.838699e-02	ci left: 1.383716e-01	ci right 1.409430e-01	k: 39103	n:280000
DUSP22   280000 perm   76 sec   (3700 perm/sec)   p_kst 1.396536e-01   p_cons 3.625000e-03   p_joint 9.660714e-03

Joint ci ratio: 6.780741e-02	ci left: 1.100662e-02	ci right 1.178251e-02	k: 3303	n:290000
Cons ci ratio: 1.203524e-01	ci left: 3.425403e-03	ci right 3.867366e-03	k: 1056	n:290000
KS ci ratio: 1.806734e-02	ci left: 1.383920e-01	ci right 1.409186e-01	k: 40499	n:290000
DUSP22   290000 perm   80 sec   (3631 perm/sec)   p_kst 1.396517e-01   p_cons 3.641379e-03   p_joint 1.138966e-02

Joint ci ratio: 6.764469e-02	ci left: 1.069538e-02	ci right 1.144745e-02	k: 3320	n:300000
Cons ci ratio: 1.180832e-01	ci left: 3.443816e-03	ci right 3.879192e-03	k: 1097	n:300000
KS ci ratio: 1.775470e-02	ci left: 1.385343e-01	ci right 1.410193e-01	k: 41932	n:300000
DUSP22   300000 perm   84 sec   (3565 perm/sec)   p_kst 1.397733e-01   p_cons 3.656667e-03   p_joint 1.106667e-02

Joint ci ratio: 7.197666e-02	ci left: 9.136159e-03	ci right 9.821445e-03	k: 2937	n:310000
Cons ci ratio: 1.162968e-01	ci left: 3.439187e-03	ci right 3.866948e-03	k: 1131	n:310000
KS ci ratio: 1.746499e-02	ci left: 1.385682e-01	ci right 1.410128e-01	k: 43334	n:310000
DUSP22   310000 perm   89 sec   (3501 perm/sec)   p_kst 1.397871e-01   p_cons 3.648387e-03   p_joint 9.474194e-03

Joint ci ratio: 8.435509e-02	ci left: 6.420261e-03	ci right 6.988728e-03	k: 2144	n:320000
Cons ci ratio: 1.149359e-01	ci left: 3.413645e-03	ci right 3.832923e-03	k: 1158	n:320000
KS ci ratio: 1.740490e-02	ci left: 1.356360e-01	ci right 1.380206e-01	k: 43784	n:320000
DUSP22   320000 perm   93 sec   (3442 perm/sec)   p_kst 1.368250e-01   p_cons 3.618750e-03   p_joint 6.700000e-03

Joint ci ratio: 7.263634e-02	ci left: 8.430590e-03	ci right 9.068991e-03	k: 2886	n:330000
Cons ci ratio: 1.132390e-01	ci left: 3.413235e-03	ci right 3.825860e-03	k: 1193	n:330000
KS ci ratio: 1.714780e-02	ci left: 1.355356e-01	ci right 1.378829e-01	k: 45113	n:330000
DUSP22   330000 perm   97 sec   (3388 perm/sec)   p_kst 1.367061e-01   p_cons 3.615152e-03   p_joint 8.745455e-03

Joint ci ratio: 7.150546e-02	ci left: 8.448346e-03	ci right 9.077717e-03	k: 2978	n:340000
Cons ci ratio: 1.119355e-01	ci left: 3.392877e-03	ci right 3.798009e-03	k: 1221	n:340000
KS ci ratio: 1.690472e-02	ci left: 1.354004e-01	ci right 1.377117e-01	k: 46428	n:340000
DUSP22   340000 perm   102 sec   (3336 perm/sec)   p_kst 1.365529e-01   p_cons 3.591176e-03   p_joint 8.758824e-03

Joint ci ratio: 7.091668e-02	ci left: 8.347262e-03	ci right 8.963771e-03	k: 3028	n:350000
Cons ci ratio: 1.103663e-01	ci left: 3.393158e-03	ci right 3.792273e-03	k: 1256	n:350000
KS ci ratio: 1.665493e-02	ci left: 1.355094e-01	ci right 1.377881e-01	k: 47826	n:350000
DUSP22   350000 perm   107 sec   (3282 perm/sec)   p_kst 1.366457e-01   p_cons 3.588571e-03   p_joint 8.651429e-03

Joint ci ratio: 6.967194e-02	ci left: 8.412859e-03	ci right 9.022866e-03	k: 3137	n:360000
Cons ci ratio: 1.089036e-01	ci left: 3.390758e-03	ci right 3.783966e-03	k: 1290	n:360000
KS ci ratio: 1.642556e-02	ci left: 1.354742e-01	ci right 1.377206e-01	k: 49174	n:360000
DUSP22   360000 perm   111 sec   (3233 perm/sec)   p_kst 1.365944e-01   p_cons 3.583333e-03   p_joint 8.713889e-03

Joint ci ratio: 6.873652e-02	ci left: 8.413895e-03	ci right 9.015459e-03	k: 3223	n:370000
Cons ci ratio: 1.077836e-01	ci left: 3.370109e-03	ci right 3.756649e-03	k: 1317	n:370000
KS ci ratio: 1.621563e-02	ci left: 1.352929e-01	ci right 1.375074e-01	k: 50467	n:370000
DUSP22   370000 perm   116 sec   (3186 perm/sec)   p_kst 1.363973e-01   p_cons 3.559459e-03   p_joint 8.710811e-03

Joint ci ratio: 6.792065e-02	ci left: 8.394229e-03	ci right 8.986983e-03	k: 3301	n:380000
Cons ci ratio: 1.064991e-01	ci left: 3.363375e-03	ci right 3.744257e-03	k: 1349	n:380000
KS ci ratio: 1.599692e-02	ci left: 1.353653e-01	ci right 1.375508e-01	k: 51853	n:380000
DUSP22   380000 perm   121 sec   (3141 perm/sec)   p_kst 1.364553e-01   p_cons 3.550000e-03   p_joint 8.686842e-03

Joint ci ratio: 6.719334e-02	ci left: 8.360484e-03	ci right 8.944287e-03	k: 3373	n:390000
Cons ci ratio: 1.051449e-01	ci left: 3.364503e-03	ci right 3.740368e-03	k: 1384	n:390000
KS ci ratio: 1.579042e-02	ci left: 1.353805e-01	ci right 1.375377e-01	k: 53218	n:390000
DUSP22   390000 perm   126 sec   (3097 perm/sec)   p_kst 1.364564e-01   p_cons 3.548718e-03   p_joint 8.648718e-03

Joint ci ratio: 6.645000e-02	ci left: 8.338294e-03	ci right 8.913858e-03	k: 3449	n:400000
Cons ci ratio: 1.038411e-01	ci left: 3.365604e-03	ci right 3.736645e-03	k: 1419	n:400000
KS ci ratio: 1.559586e-02	ci left: 1.353328e-01	ci right 1.374625e-01	k: 54558	n:400000
DUSP22   400000 perm   131 sec   (3058 perm/sec)   p_kst 1.363950e-01   p_cons 3.547500e-03   p_joint 8.622500e-03

Joint ci ratio: 6.635046e-02	ci left: 8.161280e-03	ci right 8.723748e-03	k: 3460	n:410000
Cons ci ratio: 1.026909e-01	ci left: 3.359549e-03	ci right 3.725572e-03	k: 1451	n:410000
KS ci ratio: 1.539191e-02	ci left: 1.355380e-01	ci right 1.376428e-01	k: 56001	n:410000
DUSP22   410000 perm   135 sec   (3033 perm/sec)   p_kst 1.365878e-01   p_cons 3.539024e-03   p_joint 8.439024e-03

Joint ci ratio: 7.539445e-02	ci left: 6.154043e-03	ci right 6.638519e-03	k: 2685	n:420000
Cons ci ratio: 1.014752e-01	ci left: 3.360765e-03	ci right 3.722328e-03	k: 1486	n:420000
KS ci ratio: 1.520479e-02	ci left: 1.355936e-01	ci right 1.376734e-01	k: 57385	n:420000
DUSP22   420000 perm   140 sec   (2997 perm/sec)   p_kst 1.366310e-01   p_cons 3.538095e-03   p_joint 6.392857e-03

Joint ci ratio: 7.443029e-02	ci left: 6.170669e-03	ci right 6.649972e-03	k: 2755	n:430000
Cons ci ratio: 1.005340e-01	ci left: 3.346078e-03	ci right 3.702524e-03	k: 1514	n:430000
KS ci ratio: 1.503026e-02	ci left: 1.355540e-01	ci right 1.376091e-01	k: 58729	n:430000
DUSP22   430000 perm   146 sec   (2953 perm/sec)   p_kst 1.365791e-01   p_cons 3.520930e-03   p_joint 6.406977e-03

Joint ci ratio: 7.360713e-02	ci left: 6.168727e-03	ci right 6.642354e-03	k: 2817	n:440000
Cons ci ratio: 9.916799e-02	ci left: 3.363103e-03	ci right 3.716212e-03	k: 1556	n:440000
KS ci ratio: 1.485602e-02	ci left: 1.356046e-01	ci right 1.376365e-01	k: 60112	n:440000
DUSP22   440000 perm   151 sec   (2916 perm/sec)   p_kst 1.366182e-01   p_cons 3.536364e-03   p_joint 6.402273e-03

Outputting figure to mutsig2_images.part000000000053/DUSP22.8_587_440000_0.13662_0.0035364_0.0064023.png
                gene_name: DUSP22
               theta_stop: 0.099 
                    nperm: 440000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0035 
      ci_cons_bounds_left: 0.0034 
     ci_cons_bounds_right: 0.0037 
                  p_joint: 0.0064 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0066 

Current progress: 37 percent done.
DSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
DSC2   10000 perm   2 sec   (5081 perm/sec)   p_kst 9.737000e-01   p_cons 1.893000e-01   p_joint 4.686000e-01

Outputting figure to mutsig2_images.part000000000053/DSC2.7_2810_10000_0.9737_0.1893_0.4686.png
                gene_name: DSC2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
DRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
Cons ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
KS ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
DRP2   10000 perm   2 sec   (4994 perm/sec)   p_kst 2.967000e-01   p_cons 2.204000e-01   p_joint 3.005000e-01

Outputting figure to mutsig2_images.part000000000053/DRP2.6_2962_10000_0.2967_0.2204_0.3005.png
                gene_name: DRP2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 40 percent done.
DSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
Cons ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
KS ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
DSN1   10000 perm   2 sec   (5658 perm/sec)   p_kst 4.832000e-01   p_cons 3.705000e-01   p_joint 6.530000e-01

Outputting figure to mutsig2_images.part000000000053/DSN1.6_1111_10000_0.4832_0.3705_0.653.png
                gene_name: DSN1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
DUOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
KS ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
DUOX1   10000 perm   2 sec   (4541 perm/sec)   p_kst 7.432000e-01   p_cons 4.028000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000053/DUOX1.6_4788_10000_0.7432_0.4028_0.8048.png
                gene_name: DUOX1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 44 percent done.
DUS2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
Cons ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
KS ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
DUS2L   10000 perm   2 sec   (5809 perm/sec)   p_kst 3.895000e-01   p_cons 4.485000e-01   p_joint 5.572000e-01

Outputting figure to mutsig2_images.part000000000053/DUS2L.6_1542_10000_0.3895_0.4485_0.5572.png
                gene_name: DUS2L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
DUSP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 3.831829e-02	ci left: 5.014506e-01	ci right 5.211428e-01	k: 5113	n:10000
DUSP10   10000 perm   2 sec   (5311 perm/sec)   p_kst 5.113000e-01   p_cons 9.682000e-01   p_joint 6.971000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP10.6_1461_10000_0.5113_0.9682_0.6971.png
                gene_name: DUSP10
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 47 percent done.
DSEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
KS ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
DSEL   10000 perm   2 sec   (4750 perm/sec)   p_kst 5.010000e-01   p_cons 1.953000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000053/DSEL.5_3673_10000_0.501_0.1953_0.3663.png
                gene_name: DSEL
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 49 percent done.
DSPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
Cons ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
DSPP   10000 perm   2 sec   (4482 perm/sec)   p_kst 1.100000e-03   p_cons 4.402000e-01   p_joint 4.310000e-02

Joint ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
Cons ci ratio: 3.276484e-02	ci left: 4.102539e-01	ci right 4.239703e-01	k: 8342	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
DSPP   20000 perm   5 sec   (4070 perm/sec)   p_kst 1.050000e-03   p_cons 4.171000e-01   p_joint 1.425000e-02

Joint ci ratio: 2.132920e-01	ci left: 9.945298e-03	ci right 1.235078e-02	k: 333	n:30000
Cons ci ratio: 2.678256e-02	ci left: 4.109797e-01	ci right 4.221698e-01	k: 12497	n:30000
KS ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
DSPP   30000 perm   7 sec   (4011 perm/sec)   p_kst 9.000000e-04   p_cons 4.165667e-01   p_joint 1.110000e-02

Joint ci ratio: 2.214143e-01	ci left: 6.914018e-03	ci right 8.658579e-03	k: 310	n:40000
Cons ci ratio: 2.318837e-02	ci left: 4.118623e-01	ci right 4.215498e-01	k: 16668	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
DSPP   40000 perm   10 sec   (4017 perm/sec)   p_kst 9.750000e-04   p_cons 4.167000e-01   p_joint 7.750000e-03

Joint ci ratio: 2.198171e-01	ci left: 5.625264e-03	ci right 7.032976e-03	k: 315	n:50000
Cons ci ratio: 2.065880e-02	ci left: 4.142907e-01	ci right 4.229588e-01	k: 20931	n:50000
KS ci ratio: 5.715163e-01	ci left: 6.736319e-04	ci right 1.226963e-03	k: 46	n:50000
DSPP   50000 perm   13 sec   (3995 perm/sec)   p_kst 9.200000e-04   p_cons 4.186200e-01   p_joint 6.300000e-03

Joint ci ratio: 2.328815e-01	ci left: 4.152773e-03	ci right 5.262638e-03	k: 281	n:60000
Cons ci ratio: 1.883648e-02	ci left: 4.152475e-01	ci right 4.231603e-01	k: 25152	n:60000
KS ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
DSPP   60000 perm   15 sec   (3958 perm/sec)   p_kst 1.033333e-03   p_cons 4.192000e-01   p_joint 4.683333e-03

Joint ci ratio: 3.590377e-01	ci left: 1.395503e-03	ci right 2.018400e-03	k: 118	n:70000
Cons ci ratio: 1.740861e-02	ci left: 4.163970e-01	ci right 4.237239e-01	k: 29404	n:70000
KS ci ratio: 4.716765e-01	ci left: 7.544288e-04	ci right 1.231357e-03	k: 68	n:70000
DSPP   70000 perm   18 sec   (3920 perm/sec)   p_kst 9.714286e-04   p_cons 4.200571e-01   p_joint 1.685714e-03

Joint ci ratio: 2.326059e-01	ci left: 3.126152e-03	ci right 3.960490e-03	k: 282	n:80000
Cons ci ratio: 1.627119e-02	ci left: 4.170261e-01	ci right 4.238797e-01	k: 33636	n:80000
KS ci ratio: 4.465076e-01	ci left: 7.485627e-04	ci right 1.188925e-03	k: 76	n:80000
DSPP   80000 perm   21 sec   (3874 perm/sec)   p_kst 9.500000e-04   p_cons 4.204500e-01   p_joint 3.525000e-03

Joint ci ratio: 2.451306e-01	ci left: 2.486193e-03	ci right 3.190902e-03	k: 254	n:90000
Cons ci ratio: 1.533001e-02	ci left: 4.175606e-01	ci right 4.240223e-01	k: 37871	n:90000
KS ci ratio: 4.084770e-01	ci left: 8.141593e-04	ci right 1.241277e-03	k: 91	n:90000
DSPP   90000 perm   23 sec   (3858 perm/sec)   p_kst 1.011111e-03   p_cons 4.207889e-01   p_joint 2.822222e-03

Joint ci ratio: 2.432601e-01	ci left: 2.275095e-03	ci right 2.914300e-03	k: 258	n:100000
Cons ci ratio: 1.455645e-02	ci left: 4.172879e-01	ci right 4.234167e-01	k: 42035	n:100000
KS ci ratio: 3.860482e-01	ci left: 8.317623e-04	ci right 1.238075e-03	k: 102	n:100000
DSPP   100000 perm   26 sec   (3834 perm/sec)   p_kst 1.020000e-03   p_cons 4.203500e-01   p_joint 2.580000e-03

Joint ci ratio: 2.283123e-01	ci left: 2.367684e-03	ci right 2.986274e-03	k: 293	n:110000
Cons ci ratio: 1.389110e-02	ci left: 4.170082e-01	ci right 4.228505e-01	k: 46192	n:110000
KS ci ratio: 3.591498e-01	ci left: 8.880028e-04	ci right 1.284514e-03	k: 118	n:110000
DSPP   110000 perm   29 sec   (3801 perm/sec)   p_kst 1.072727e-03   p_cons 4.199273e-01   p_joint 2.663636e-03

Joint ci ratio: 2.256606e-01	ci left: 2.225374e-03	ci right 2.799090e-03	k: 300	n:120000
Cons ci ratio: 1.331118e-02	ci left: 4.167141e-01	ci right 4.223065e-01	k: 50341	n:120000
KS ci ratio: 3.397173e-01	ci left: 9.204398e-04	ci right 1.304326e-03	k: 132	n:120000
DSPP   120000 perm   32 sec   (3768 perm/sec)   p_kst 1.100000e-03   p_cons 4.195083e-01   p_joint 2.500000e-03

Joint ci ratio: 1.728990e-01	ci left: 3.597887e-03	ci right 4.286070e-03	k: 511	n:130000
Cons ci ratio: 1.278012e-02	ci left: 4.171613e-01	ci right 4.225346e-01	k: 54580	n:130000
KS ci ratio: 3.299432e-01	ci left: 9.060015e-04	ci right 1.270688e-03	k: 140	n:130000
DSPP   130000 perm   35 sec   (3733 perm/sec)   p_kst 1.076923e-03   p_cons 4.198462e-01   p_joint 3.930769e-03

Joint ci ratio: 1.229613e-01	ci left: 6.763784e-03	ci right 7.656809e-03	k: 1008	n:140000
Cons ci ratio: 1.231586e-02	ci left: 4.172343e-01	ci right 4.224119e-01	k: 58775	n:140000
KS ci ratio: 3.188319e-01	ci left: 9.069011e-04	ci right 1.257149e-03	k: 150	n:140000
DSPP   140000 perm   42 sec   (3314 perm/sec)   p_kst 1.071429e-03   p_cons 4.198214e-01   p_joint 7.200000e-03

Joint ci ratio: 1.231755e-01	ci left: 6.293386e-03	ci right 7.125853e-03	k: 1005	n:150000
Cons ci ratio: 1.189749e-02	ci left: 4.173540e-01	ci right 4.223558e-01	k: 62978	n:150000
KS ci ratio: 3.078169e-01	ci left: 9.140105e-04	ci right 1.252418e-03	k: 161	n:150000
DSPP   150000 perm   48 sec   (3094 perm/sec)   p_kst 1.073333e-03   p_cons 4.198533e-01   p_joint 6.700000e-03

Joint ci ratio: 1.196615e-01	ci left: 6.263655e-03	ci right 7.066879e-03	k: 1065	n:160000
Cons ci ratio: 1.151638e-02	ci left: 4.175737e-01	ci right 4.224167e-01	k: 67199	n:160000
KS ci ratio: 2.996087e-01	ci left: 9.088490e-04	ci right 1.234665e-03	k: 170	n:160000
DSPP   160000 perm   55 sec   (2906 perm/sec)   p_kst 1.062500e-03   p_cons 4.199937e-01   p_joint 6.656250e-03

Joint ci ratio: 1.193476e-01	ci left: 5.929382e-03	ci right 6.687602e-03	k: 1071	n:170000
Cons ci ratio: 1.116875e-02	ci left: 4.178110e-01	ci right 4.225094e-01	k: 71427	n:170000
KS ci ratio: 2.953273e-01	ci left: 8.826026e-04	ci right 1.193641e-03	k: 175	n:170000
DSPP   170000 perm   61 sec   (2807 perm/sec)   p_kst 1.029412e-03   p_cons 4.201588e-01   p_joint 6.300000e-03

Joint ci ratio: 1.193127e-01	ci left: 5.605305e-03	ci right 6.321858e-03	k: 1072	n:180000
Cons ci ratio: 1.085032e-02	ci left: 4.180460e-01	ci right 4.226122e-01	k: 75659	n:180000
KS ci ratio: 2.865091e-01	ci left: 8.902226e-04	ci right 1.192884e-03	k: 186	n:180000
DSPP   180000 perm   64 sec   (2815 perm/sec)   p_kst 1.033333e-03   p_cons 4.203278e-01   p_joint 5.955556e-03

Joint ci ratio: 1.166293e-01	ci left: 5.565675e-03	ci right 6.260056e-03	k: 1122	n:190000
Cons ci ratio: 1.056302e-02	ci left: 4.180107e-01	ci right 4.224549e-01	k: 79844	n:190000
KS ci ratio: 2.749823e-01	ci left: 9.216554e-04	ci right 1.220220e-03	k: 202	n:190000
DSPP   190000 perm   69 sec   (2753 perm/sec)   p_kst 1.063158e-03   p_cons 4.202316e-01   p_joint 5.905263e-03

Joint ci ratio: 1.166989e-01	ci left: 5.282492e-03	ci right 5.941962e-03	k: 1121	n:200000
Cons ci ratio: 1.029137e-02	ci left: 4.182653e-01	ci right 4.225970e-01	k: 84086	n:200000
KS ci ratio: 2.684502e-01	ci left: 9.221669e-04	ci right 1.212606e-03	k: 212	n:200000
DSPP   200000 perm   76 sec   (2630 perm/sec)   p_kst 1.060000e-03   p_cons 4.204300e-01   p_joint 5.605000e-03

Joint ci ratio: 1.148264e-01	ci left: 5.202021e-03	ci right 5.840316e-03	k: 1158	n:210000
Cons ci ratio: 1.004623e-02	ci left: 4.181781e-01	ci right 4.224051e-01	k: 88261	n:210000
KS ci ratio: 2.555689e-01	ci left: 9.761433e-04	ci right 1.266481e-03	k: 234	n:210000
DSPP   210000 perm   83 sec   (2521 perm/sec)   p_kst 1.114286e-03   p_cons 4.202905e-01   p_joint 5.514286e-03

Joint ci ratio: 1.142968e-01	ci left: 5.014105e-03	ci right 5.626313e-03	k: 1169	n:220000
Cons ci ratio: 9.813873e-03	ci left: 4.182952e-01	ci right 4.224251e-01	k: 92479	n:220000
KS ci ratio: 2.508125e-01	ci left: 9.700862e-04	ci right 1.252414e-03	k: 243	n:220000
DSPP   220000 perm   91 sec   (2422 perm/sec)   p_kst 1.104545e-03   p_cons 4.203591e-01   p_joint 5.313636e-03

Joint ci ratio: 1.215136e-01	ci left: 4.230552e-03	ci right 4.782049e-03	k: 1035	n:230000
Cons ci ratio: 9.597183e-03	ci left: 4.183902e-01	ci right 4.224292e-01	k: 96694	n:230000
KS ci ratio: 2.388663e-01	ci left: 1.029943e-03	ci right 1.313304e-03	k: 268	n:230000
DSPP   230000 perm   98 sec   (2339 perm/sec)   p_kst 1.165217e-03   p_cons 4.204087e-01   p_joint 4.500000e-03

Joint ci ratio: 1.246448e-01	ci left: 3.848273e-03	ci right 4.363816e-03	k: 984	n:240000
Cons ci ratio: 9.401071e-03	ci left: 4.181242e-01	ci right 4.220777e-01	k: 100824	n:240000
KS ci ratio: 2.341276e-01	ci left: 1.030147e-03	ci right 1.307127e-03	k: 279	n:240000
DSPP   240000 perm   108 sec   (2220 perm/sec)   p_kst 1.162500e-03   p_cons 4.201000e-01   p_joint 4.100000e-03

Joint ci ratio: 1.233419e-01	ci left: 3.775728e-03	ci right 4.275879e-03	k: 1005	n:250000
Cons ci ratio: 9.210453e-03	ci left: 4.182001e-01	ci right 4.220737e-01	k: 105034	n:250000
KS ci ratio: 2.292662e-01	ci left: 1.034155e-03	ci right 1.305622e-03	k: 291	n:250000
DSPP   250000 perm   120 sec   (2088 perm/sec)   p_kst 1.164000e-03   p_cons 4.201360e-01   p_joint 4.020000e-03

Joint ci ratio: 1.287289e-01	ci left: 3.325012e-03	ci right 3.786164e-03	k: 923	n:260000
Cons ci ratio: 9.035186e-03	ci left: 4.180442e-01	ci right 4.218422e-01	k: 109185	n:260000
KS ci ratio: 2.250664e-01	ci left: 1.034280e-03	ci right 1.300117e-03	k: 302	n:260000
DSPP   260000 perm   132 sec   (1976 perm/sec)   p_kst 1.161538e-03   p_cons 4.199423e-01   p_joint 3.550000e-03

Joint ci ratio: 1.272940e-01	ci left: 3.277145e-03	ci right 3.726209e-03	k: 944	n:270000
Cons ci ratio: 8.864029e-03	ci left: 4.182040e-01	ci right 4.219311e-01	k: 113418	n:270000
KS ci ratio: 2.228730e-01	ci left: 1.016948e-03	ci right 1.275433e-03	k: 308	n:270000
DSPP   270000 perm   144 sec   (1873 perm/sec)   p_kst 1.140741e-03   p_cons 4.200667e-01   p_joint 3.496296e-03

Joint ci ratio: 1.229401e-01	ci left: 3.395374e-03	ci right 3.843568e-03	k: 1012	n:280000
Cons ci ratio: 8.329070e-03	ci left: 4.398345e-01	ci right 4.435167e-01	k: 123669	n:280000
KS ci ratio: 2.207423e-01	ci left: 1.000866e-03	ci right 1.252501e-03	k: 314	n:280000
DSPP   280000 perm   152 sec   (1838 perm/sec)   p_kst 1.121429e-03   p_cons 4.416750e-01   p_joint 3.614286e-03

Joint ci ratio: 1.224635e-01	ci left: 3.305023e-03	ci right 3.739475e-03	k: 1020	n:290000
Cons ci ratio: 8.185795e-03	ci left: 4.397709e-01	ci right 4.433889e-01	k: 128058	n:290000
KS ci ratio: 2.153393e-01	ci left: 1.018514e-03	ci right 1.267490e-03	k: 330	n:290000
DSPP   290000 perm   160 sec   (1807 perm/sec)   p_kst 1.137931e-03   p_cons 4.415793e-01   p_joint 3.517241e-03

Joint ci ratio: 1.238787e-01	ci left: 3.120532e-03	ci right 3.535820e-03	k: 997	n:300000
Cons ci ratio: 8.050158e-03	ci left: 4.396820e-01	ci right 4.432391e-01	k: 132438	n:300000
KS ci ratio: 2.118481e-01	ci left: 1.019269e-03	ci right 1.263865e-03	k: 341	n:300000
DSPP   300000 perm   167 sec   (1795 perm/sec)   p_kst 1.136667e-03   p_cons 4.414600e-01   p_joint 3.323333e-03

Joint ci ratio: 1.231448e-01	ci left: 3.057377e-03	ci right 3.461674e-03	k: 1009	n:310000
Cons ci ratio: 7.922290e-03	ci left: 4.395220e-01	ci right 4.430210e-01	k: 136794	n:310000
KS ci ratio: 2.085214e-01	ci left: 1.020005e-03	ci right 1.260444e-03	k: 352	n:310000
DSPP   310000 perm   171 sec   (1808 perm/sec)   p_kst 1.135484e-03   p_cons 4.412710e-01   p_joint 3.254839e-03

Joint ci ratio: 1.213562e-01	ci left: 3.052717e-03	ci right 3.450113e-03	k: 1039	n:320000
Cons ci ratio: 7.795433e-03	ci left: 4.396817e-01	ci right 4.431257e-01	k: 141249	n:320000
KS ci ratio: 2.050648e-01	ci left: 1.023689e-03	ci right 1.260494e-03	k: 364	n:320000
DSPP   320000 perm   176 sec   (1820 perm/sec)   p_kst 1.137500e-03   p_cons 4.414031e-01   p_joint 3.246875e-03

Joint ci ratio: 1.196433e-01	ci left: 3.048379e-03	ci right 3.439213e-03	k: 1069	n:330000
Cons ci ratio: 7.674151e-03	ci left: 4.398533e-01	ci right 4.432447e-01	k: 145711	n:330000
KS ci ratio: 2.023126e-01	ci left: 1.021425e-03	ci right 1.254144e-03	k: 374	n:330000
DSPP   330000 perm   180 sec   (1828 perm/sec)   p_kst 1.133333e-03   p_cons 4.415485e-01   p_joint 3.239394e-03

Joint ci ratio: 1.181627e-01	ci left: 3.035769e-03	ci right 3.419834e-03	k: 1096	n:340000
Cons ci ratio: 7.561063e-03	ci left: 4.398387e-01	ci right 4.431799e-01	k: 150113	n:340000
KS ci ratio: 1.991511e-01	ci left: 1.024904e-03	ci right 1.254323e-03	k: 386	n:340000
DSPP   340000 perm   185 sec   (1839 perm/sec)   p_kst 1.135294e-03   p_cons 4.415088e-01   p_joint 3.223529e-03

Joint ci ratio: 1.173659e-01	ci left: 2.990623e-03	ci right 3.366248e-03	k: 1111	n:350000
Cons ci ratio: 7.453349e-03	ci left: 4.397911e-01	ci right 4.430841e-01	k: 154503	n:350000
KS ci ratio: 1.953992e-01	ci left: 1.036362e-03	ci right 1.263456e-03	k: 401	n:350000
DSPP   350000 perm   189 sec   (1848 perm/sec)   p_kst 1.145714e-03   p_cons 4.414371e-01   p_joint 3.174286e-03

Joint ci ratio: 1.164296e-01	ci left: 2.956085e-03	ci right 3.324206e-03	k: 1129	n:360000
Cons ci ratio: 7.351230e-03	ci left: 4.396715e-01	ci right 4.429183e-01	k: 158866	n:360000
KS ci ratio: 1.923140e-01	ci left: 1.041933e-03	ci right 1.266221e-03	k: 414	n:360000
DSPP   360000 perm   194 sec   (1855 perm/sec)   p_kst 1.150000e-03   p_cons 4.412944e-01   p_joint 3.136111e-03

Joint ci ratio: 1.024236e-01	ci left: 3.741214e-03	ci right 4.147696e-03	k: 1458	n:370000
Cons ci ratio: 7.251883e-03	ci left: 4.396478e-01	ci right 4.428504e-01	k: 163262	n:370000
KS ci ratio: 1.900384e-01	ci left: 1.039506e-03	ci right 1.260318e-03	k: 424	n:370000
DSPP   370000 perm   199 sec   (1862 perm/sec)   p_kst 1.145946e-03   p_cons 4.412486e-01   p_joint 3.940541e-03

Joint ci ratio: 1.018697e-01	ci left: 3.683785e-03	ci right 4.081733e-03	k: 1474	n:380000
Cons ci ratio: 7.156152e-03	ci left: 4.396467e-01	ci right 4.428068e-01	k: 167666	n:380000
KS ci ratio: 1.865581e-01	ci left: 1.052272e-03	ci right 1.271239e-03	k: 440	n:380000
DSPP   380000 perm   203 sec   (1868 perm/sec)   p_kst 1.157895e-03   p_cons 4.412263e-01   p_joint 3.878947e-03

Joint ci ratio: 1.041311e-01	ci left: 3.431928e-03	ci right 3.811403e-03	k: 1411	n:390000
Cons ci ratio: 7.062462e-03	ci left: 4.397613e-01	ci right 4.428806e-01	k: 172115	n:390000
KS ci ratio: 1.850960e-01	ci left: 1.042404e-03	ci right 1.257426e-03	k: 447	n:390000
DSPP   390000 perm   208 sec   (1872 perm/sec)   p_kst 1.146154e-03   p_cons 4.413205e-01   p_joint 3.617949e-03

Joint ci ratio: 1.102593e-01	ci left: 2.976271e-03	ci right 3.325988e-03	k: 1259	n:400000
Cons ci ratio: 6.972464e-03	ci left: 4.398629e-01	ci right 4.429430e-01	k: 176561	n:400000
KS ci ratio: 1.822693e-01	ci left: 1.049735e-03	ci right 1.262598e-03	k: 461	n:400000
DSPP   400000 perm   216 sec   (1850 perm/sec)   p_kst 1.152500e-03   p_cons 4.414025e-01   p_joint 3.147500e-03

Joint ci ratio: 1.091397e-01	ci left: 2.965353e-03	ci right 3.310021e-03	k: 1285	n:410000
Cons ci ratio: 6.888955e-03	ci left: 4.397354e-01	ci right 4.427776e-01	k: 180915	n:410000
KS ci ratio: 1.805201e-01	ci left: 1.045086e-03	ci right 1.254750e-03	k: 470	n:410000
DSPP   410000 perm   227 sec   (1807 perm/sec)   p_kst 1.146341e-03   p_cons 4.412561e-01   p_joint 3.134146e-03

Joint ci ratio: 1.081363e-01	ci left: 2.950338e-03	ci right 3.289908e-03	k: 1309	n:420000
Cons ci ratio: 6.806600e-03	ci left: 4.397428e-01	ci right 4.427485e-01	k: 185323	n:420000
KS ci ratio: 1.786340e-01	ci left: 1.042942e-03	ci right 1.249753e-03	k: 480	n:420000
DSPP   420000 perm   233 sec   (1803 perm/sec)   p_kst 1.142857e-03   p_cons 4.412452e-01   p_joint 3.116667e-03

Joint ci ratio: 1.066798e-01	ci left: 2.963198e-03	ci right 3.299366e-03	k: 1345	n:430000
Cons ci ratio: 6.728113e-03	ci left: 4.396780e-01	ci right 4.426484e-01	k: 189700	n:430000
KS ci ratio: 1.750304e-01	ci left: 1.063141e-03	ci right 1.269256e-03	k: 500	n:430000
DSPP   430000 perm   243 sec   (1768 perm/sec)   p_kst 1.162791e-03   p_cons 4.411628e-01   p_joint 3.127907e-03

Joint ci ratio: 1.075283e-01	ci left: 2.849395e-03	ci right 3.175386e-03	k: 1324	n:440000
Cons ci ratio: 6.652035e-03	ci left: 4.396344e-01	ci right 4.425709e-01	k: 194085	n:440000
KS ci ratio: 1.729711e-01	ci left: 1.065064e-03	ci right 1.268869e-03	k: 512	n:440000
DSPP   440000 perm   254 sec   (1730 perm/sec)   p_kst 1.163636e-03   p_cons 4.411023e-01   p_joint 3.009091e-03

Joint ci ratio: 1.088583e-01	ci left: 2.716878e-03	ci right 3.031799e-03	k: 1292	n:450000
Cons ci ratio: 6.579429e-03	ci left: 4.395220e-01	ci right 4.424255e-01	k: 198438	n:450000
KS ci ratio: 1.711461e-01	ci left: 1.064788e-03	ci right 1.266168e-03	k: 523	n:450000
DSPP   450000 perm   265 sec   (1700 perm/sec)   p_kst 1.162222e-03   p_cons 4.409733e-01   p_joint 2.871111e-03

Joint ci ratio: 1.083586e-01	ci left: 2.683192e-03	ci right 2.992688e-03	k: 1304	n:460000
Cons ci ratio: 6.507829e-03	ci left: 4.395145e-01	ci right 4.423862e-01	k: 202837	n:460000
KS ci ratio: 1.687472e-01	ci left: 1.072863e-03	ci right 1.272636e-03	k: 538	n:460000
DSPP   460000 perm   275 sec   (1675 perm/sec)   p_kst 1.169565e-03   p_cons 4.409500e-01   p_joint 2.834783e-03

Joint ci ratio: 1.070938e-01	ci left: 2.690283e-03	ci right 2.996748e-03	k: 1335	n:470000
Cons ci ratio: 6.437156e-03	ci left: 4.396117e-01	ci right 4.424528e-01	k: 207285	n:470000
KS ci ratio: 1.667481e-01	ci left: 1.076534e-03	ci right 1.274378e-03	k: 551	n:470000
DSPP   470000 perm   280 sec   (1679 perm/sec)   p_kst 1.172340e-03   p_cons 4.410319e-01   p_joint 2.840426e-03

Joint ci ratio: 1.067370e-01	ci left: 2.652481e-03	ci right 2.953570e-03	k: 1344	n:480000
Cons ci ratio: 6.372639e-03	ci left: 4.394031e-01	ci right 4.422143e-01	k: 211588	n:480000
KS ci ratio: 1.655534e-01	ci left: 1.070080e-03	ci right 1.265188e-03	k: 559	n:480000
DSPP   480000 perm   285 sec   (1682 perm/sec)   p_kst 1.164583e-03   p_cons 4.408083e-01   p_joint 2.800000e-03

Joint ci ratio: 9.391611e-02	ci left: 3.376422e-03	ci right 3.711123e-03	k: 1735	n:490000
Cons ci ratio: 6.306549e-03	ci left: 4.394745e-01	ci right 4.422568e-01	k: 216024	n:490000
KS ci ratio: 1.633792e-01	ci left: 1.077594e-03	ci right 1.271239e-03	k: 574	n:490000
DSPP   490000 perm   291 sec   (1685 perm/sec)   p_kst 1.171429e-03   p_cons 4.408653e-01   p_joint 3.540816e-03

Joint ci ratio: 9.539188e-02	ci left: 3.205389e-03	ci right 3.528408e-03	k: 1682	n:500000
Cons ci ratio: 6.241080e-03	ci left: 4.396531e-01	ci right 4.424076e-01	k: 220515	n:500000
KS ci ratio: 1.617006e-01	ci left: 1.079066e-03	ci right 1.270789e-03	k: 586	n:500000
DSPP   500000 perm   296 sec   (1688 perm/sec)   p_kst 1.172000e-03   p_cons 4.410300e-01   p_joint 3.364000e-03

Joint ci ratio: 8.604656e-02	ci left: 3.878497e-03	ci right 4.229135e-03	k: 2066	n:510000
Cons ci ratio: 6.180556e-03	ci left: 4.395897e-01	ci right 4.423169e-01	k: 224886	n:510000
KS ci ratio: 1.591443e-01	ci left: 1.093668e-03	ci right 1.284620e-03	k: 605	n:510000
DSPP   510000 perm   302 sec   (1688 perm/sec)   p_kst 1.186275e-03   p_cons 4.409529e-01   p_joint 4.050980e-03

Joint ci ratio: 8.522593e-02	ci left: 3.879186e-03	ci right 4.226376e-03	k: 2106	n:520000
Cons ci ratio: 6.121760e-03	ci left: 4.395288e-01	ci right 4.422296e-01	k: 229257	n:520000
KS ci ratio: 1.582338e-01	ci left: 1.085562e-03	ci right 1.273912e-03	k: 612	n:520000
DSPP   520000 perm   308 sec   (1690 perm/sec)   p_kst 1.176923e-03   p_cons 4.408788e-01   p_joint 4.050000e-03

Joint ci ratio: 8.427083e-02	ci left: 3.894642e-03	ci right 4.239116e-03	k: 2154	n:530000
Cons ci ratio: 6.062243e-03	ci left: 4.396627e-01	ci right 4.423380e-01	k: 233730	n:530000
KS ci ratio: 1.557128e-01	ci left: 1.101334e-03	ci right 1.289092e-03	k: 632	n:530000
DSPP   530000 perm   313 sec   (1691 perm/sec)   p_kst 1.192453e-03   p_cons 4.410000e-01   p_joint 4.064151e-03

Joint ci ratio: 8.437235e-02	ci left: 3.813448e-03	ci right 4.151167e-03	k: 2149	n:540000
Cons ci ratio: 6.005488e-03	ci left: 4.397047e-01	ci right 4.423551e-01	k: 238156	n:540000
KS ci ratio: 1.541379e-01	ci left: 1.104080e-03	ci right 1.290227e-03	k: 645	n:540000
DSPP   540000 perm   319 sec   (1693 perm/sec)   p_kst 1.194444e-03   p_cons 4.410296e-01   p_joint 3.979630e-03

Joint ci ratio: 8.369424e-02	ci left: 3.806411e-03	ci right 4.140666e-03	k: 2184	n:550000
Cons ci ratio: 5.951220e-03	ci left: 4.396691e-01	ci right 4.422952e-01	k: 242540	n:550000
KS ci ratio: 1.529588e-01	ci left: 1.101489e-03	ci right 1.285648e-03	k: 655	n:550000
DSPP   550000 perm   325 sec   (1694 perm/sec)   p_kst 1.190909e-03   p_cons 4.409818e-01   p_joint 3.970909e-03

Joint ci ratio: 7.939765e-02	ci left: 4.161805e-03	ci right 4.507640e-03	k: 2426	n:560000
Cons ci ratio: 5.896602e-03	ci left: 4.397847e-01	ci right 4.423873e-01	k: 247008	n:560000
KS ci ratio: 1.512391e-01	ci left: 1.107586e-03	ci right 1.290494e-03	k: 670	n:560000
DSPP   560000 perm   331 sec   (1694 perm/sec)   p_kst 1.196429e-03   p_cons 4.410857e-01   p_joint 4.332143e-03

Joint ci ratio: 7.974792e-02	ci left: 4.052673e-03	ci right 4.390993e-03	k: 2405	n:570000
Cons ci ratio: 5.843669e-03	ci left: 4.398788e-01	ci right 4.424586e-01	k: 251466	n:570000
KS ci ratio: 1.504570e-01	ci left: 1.099972e-03	ci right 1.280598e-03	k: 677	n:570000
DSPP   570000 perm   337 sec   (1692 perm/sec)   p_kst 1.187719e-03   p_cons 4.411684e-01   p_joint 4.219298e-03

Joint ci ratio: 7.914207e-02	ci left: 4.045324e-03	ci right 4.380348e-03	k: 2442	n:580000
Cons ci ratio: 5.792864e-03	ci left: 4.399078e-01	ci right 4.424652e-01	k: 255888	n:580000
KS ci ratio: 1.490348e-01	ci left: 1.102581e-03	ci right 1.281772e-03	k: 690	n:580000
DSPP   580000 perm   343 sec   (1692 perm/sec)   p_kst 1.189655e-03   p_cons 4.411862e-01   p_joint 4.210345e-03

Joint ci ratio: 7.864541e-02	ci left: 4.028264e-03	ci right 4.359685e-03	k: 2473	n:590000
Cons ci ratio: 5.743264e-03	ci left: 4.399443e-01	ci right 4.424800e-01	k: 260315	n:590000
KS ci ratio: 1.475474e-01	ci left: 1.106742e-03	ci right 1.284655e-03	k: 704	n:590000
DSPP   590000 perm   349 sec   (1692 perm/sec)   p_kst 1.193220e-03   p_cons 4.412119e-01   p_joint 4.191525e-03

Joint ci ratio: 7.804855e-02	ci left: 4.023218e-03	ci right 4.351598e-03	k: 2511	n:600000
Cons ci ratio: 5.696399e-03	ci left: 4.398514e-01	ci right 4.423658e-01	k: 264665	n:600000
KS ci ratio: 1.466149e-01	ci left: 1.102744e-03	ci right 1.278796e-03	k: 713	n:600000
DSPP   600000 perm   355 sec   (1691 perm/sec)   p_kst 1.188333e-03   p_cons 4.411083e-01   p_joint 4.185000e-03

Joint ci ratio: 7.744983e-02	ci left: 4.019955e-03	ci right 4.345438e-03	k: 2550	n:610000
Cons ci ratio: 5.649610e-03	ci left: 4.398535e-01	ci right 4.423471e-01	k: 269071	n:610000
KS ci ratio: 1.453981e-01	ci left: 1.103619e-03	ci right 1.278222e-03	k: 725	n:610000
DSPP   610000 perm   361 sec   (1690 perm/sec)   p_kst 1.188525e-03   p_cons 4.411000e-01   p_joint 4.180328e-03

Joint ci ratio: 7.782090e-02	ci left: 3.917151e-03	ci right 4.235898e-03	k: 2526	n:620000
Cons ci ratio: 5.605257e-03	ci left: 4.397410e-01	ci right 4.422144e-01	k: 273406	n:620000
KS ci ratio: 1.441135e-01	ci left: 1.106028e-03	ci right 1.279333e-03	k: 738	n:620000
DSPP   620000 perm   367 sec   (1689 perm/sec)   p_kst 1.190323e-03   p_cons 4.409774e-01   p_joint 4.074194e-03

Joint ci ratio: 7.742453e-02	ci left: 3.895441e-03	ci right 4.210734e-03	k: 2552	n:630000
Cons ci ratio: 5.561717e-03	ci left: 4.396513e-01	ci right 4.421048e-01	k: 277753	n:630000
KS ci ratio: 1.431484e-01	ci left: 1.103774e-03	ci right 1.275469e-03	k: 748	n:630000
DSPP   630000 perm   373 sec   (1687 perm/sec)   p_kst 1.187302e-03   p_cons 4.408778e-01   p_joint 4.050794e-03

Joint ci ratio: 7.377334e-02	ci left: 4.230109e-03	ci right 4.555652e-03	k: 2810	n:640000
Cons ci ratio: 5.519578e-03	ci left: 4.395285e-01	ci right 4.419627e-01	k: 282077	n:640000
KS ci ratio: 1.418288e-01	ci left: 1.107623e-03	ci right 1.278194e-03	k: 762	n:640000
DSPP   640000 perm   380 sec   (1685 perm/sec)   p_kst 1.190625e-03   p_cons 4.407453e-01   p_joint 4.390625e-03

Joint ci ratio: 7.404085e-02	ci left: 4.134822e-03	ci right 4.454236e-03	k: 2790	n:650000
Cons ci ratio: 5.476826e-03	ci left: 4.395495e-01	ci right 4.419649e-01	k: 286492	n:650000
KS ci ratio: 1.410915e-01	ci left: 1.102454e-03	ci right 1.271273e-03	k: 770	n:650000
DSPP   650000 perm   386 sec   (1684 perm/sec)   p_kst 1.184615e-03   p_cons 4.407569e-01   p_joint 4.292308e-03

Joint ci ratio: 7.346398e-02	ci left: 4.137611e-03	ci right 4.454643e-03	k: 2834	n:660000
Cons ci ratio: 5.435521e-03	ci left: 4.395275e-01	ci right 4.419245e-01	k: 290879	n:660000
KS ci ratio: 1.397384e-01	ci left: 1.107680e-03	ci right 1.275536e-03	k: 785	n:660000
DSPP   660000 perm   393 sec   (1681 perm/sec)   p_kst 1.189394e-03   p_cons 4.407258e-01   p_joint 4.293939e-03

Joint ci ratio: 7.295130e-02	ci left: 4.134464e-03	ci right 4.448951e-03	k: 2874	n:670000
Cons ci ratio: 5.393927e-03	ci left: 4.396167e-01	ci right 4.419958e-01	k: 295340	n:670000
KS ci ratio: 1.386837e-01	ci left: 1.108434e-03	ci right 1.275032e-03	k: 797	n:670000
DSPP   670000 perm   399 sec   (1679 perm/sec)   p_kst 1.189552e-03   p_cons 4.408060e-01   p_joint 4.289552e-03

Joint ci ratio: 7.492911e-02	ci left: 3.858575e-03	ci right 4.160380e-03	k: 2725	n:680000
Cons ci ratio: 5.354328e-03	ci left: 4.396062e-01	ci right 4.419678e-01	k: 299735	n:680000
KS ci ratio: 1.376526e-01	ci left: 1.109170e-03	ci right 1.274538e-03	k: 809	n:680000
DSPP   680000 perm   406 sec   (1676 perm/sec)   p_kst 1.189706e-03   p_cons 4.407868e-01   p_joint 4.007353e-03

Joint ci ratio: 6.743128e-02	ci left: 4.709521e-03	ci right 5.039585e-03	k: 3362	n:690000
Cons ci ratio: 5.315979e-03	ci left: 4.395600e-01	ci right 4.419043e-01	k: 304105	n:690000
KS ci ratio: 1.368945e-01	ci left: 1.105691e-03	ci right 1.269558e-03	k: 818	n:690000
DSPP   690000 perm   412 sec   (1674 perm/sec)   p_kst 1.185507e-03   p_cons 4.407319e-01   p_joint 4.872464e-03

Joint ci ratio: 6.888957e-02	ci left: 4.445629e-03	ci right 4.764206e-03	k: 3222	n:700000
Cons ci ratio: 5.276958e-03	ci left: 4.396536e-01	ci right 4.419812e-01	k: 308572	n:700000
KS ci ratio: 1.360665e-01	ci left: 1.103693e-03	ci right 1.266194e-03	k: 828	n:700000
DSPP   700000 perm   419 sec   (1669 perm/sec)   p_kst 1.182857e-03   p_cons 4.408171e-01   p_joint 4.602857e-03

Joint ci ratio: 6.987877e-02	ci left: 4.258439e-03	ci right 4.568161e-03	k: 3132	n:710000
Cons ci ratio: 5.239727e-03	ci left: 4.396560e-01	ci right 4.419671e-01	k: 312976	n:710000
KS ci ratio: 1.352533e-01	ci left: 1.101755e-03	ci right 1.262923e-03	k: 838	n:710000
DSPP   710000 perm   426 sec   (1666 perm/sec)   p_kst 1.180282e-03   p_cons 4.408113e-01   p_joint 4.411268e-03

Joint ci ratio: 6.940417e-02	ci left: 4.257976e-03	ci right 4.565476e-03	k: 3175	n:720000
Cons ci ratio: 5.203420e-03	ci left: 4.396444e-01	ci right 4.419394e-01	k: 317370	n:720000
KS ci ratio: 1.340600e-01	ci left: 1.106584e-03	ci right 1.266917e-03	k: 853	n:720000
DSPP   720000 perm   433 sec   (1663 perm/sec)   p_kst 1.184722e-03   p_cons 4.407917e-01   p_joint 4.409722e-03

Joint ci ratio: 6.717993e-02	ci left: 4.486465e-03	ci right 4.799678e-03	k: 3388	n:730000
Cons ci ratio: 5.168317e-03	ci left: 4.395894e-01	ci right 4.418686e-01	k: 321732	n:730000
KS ci ratio: 1.302964e-01	ci left: 1.157656e-03	ci right 1.320316e-03	k: 903	n:730000
DSPP   730000 perm   440 sec   (1660 perm/sec)   p_kst 1.236986e-03   p_cons 4.407288e-01   p_joint 4.641096e-03

Joint ci ratio: 6.663124e-02	ci left: 4.500247e-03	ci right 4.811758e-03	k: 3444	n:740000
Cons ci ratio: 5.133929e-03	ci left: 4.395346e-01	ci right 4.417983e-01	k: 326093	n:740000
KS ci ratio: 1.291581e-01	ci left: 1.162932e-03	ci right 1.324796e-03	k: 919	n:740000
DSPP   740000 perm   447 sec   (1656 perm/sec)   p_kst 1.241892e-03   p_cons 4.406662e-01   p_joint 4.654054e-03

Joint ci ratio: 6.637253e-02	ci left: 4.475644e-03	ci right 4.784202e-03	k: 3471	n:750000
Cons ci ratio: 5.101018e-03	ci left: 4.394040e-01	ci right 4.416524e-01	k: 330396	n:750000
KS ci ratio: 1.283930e-01	ci left: 1.161621e-03	ci right 1.322271e-03	k: 930	n:750000
DSPP   750000 perm   454 sec   (1652 perm/sec)   p_kst 1.240000e-03   p_cons 4.405280e-01   p_joint 4.628000e-03

Joint ci ratio: 6.590895e-02	ci left: 4.480161e-03	ci right 4.786791e-03	k: 3520	n:760000
Cons ci ratio: 5.068569e-03	ci left: 4.392927e-01	ci right 4.415262e-01	k: 334711	n:760000
KS ci ratio: 1.277771e-01	ci left: 1.157799e-03	ci right 1.317095e-03	k: 939	n:760000
DSPP   760000 perm   461 sec   (1648 perm/sec)   p_kst 1.235526e-03   p_cons 4.404092e-01   p_joint 4.631579e-03

Joint ci ratio: 6.558428e-02	ci left: 4.466684e-03	ci right 4.770828e-03	k: 3555	n:770000
Cons ci ratio: 5.034834e-03	ci left: 4.393699e-01	ci right 4.415889e-01	k: 339169	n:770000
KS ci ratio: 1.271701e-01	ci left: 1.154078e-03	ci right 1.312051e-03	k: 948	n:770000
DSPP   770000 perm   468 sec   (1644 perm/sec)   p_kst 1.231169e-03   p_cons 4.404792e-01   p_joint 4.616883e-03

Joint ci ratio: 6.322700e-02	ci left: 4.748759e-03	ci right 5.060063e-03	k: 3824	n:780000
Cons ci ratio: 5.002791e-03	ci left: 4.393440e-01	ci right 4.415487e-01	k: 343548	n:780000
KS ci ratio: 1.262422e-01	ci left: 1.156662e-03	ci right 1.313747e-03	k: 962	n:780000
DSPP   780000 perm   476 sec   (1640 perm/sec)   p_kst 1.233333e-03   p_cons 4.404462e-01   p_joint 4.902564e-03

Joint ci ratio: 6.286665e-02	ci left: 4.743466e-03	ci right 5.052587e-03	k: 3868	n:790000
Cons ci ratio: 4.970879e-03	ci left: 4.393656e-01	ci right 4.415563e-01	k: 347964	n:790000
KS ci ratio: 1.253985e-01	ci left: 1.157958e-03	ci right 1.314090e-03	k: 975	n:790000
DSPP   790000 perm   483 sec   (1636 perm/sec)   p_kst 1.234177e-03   p_cons 4.404608e-01   p_joint 4.896203e-03

Joint ci ratio: 6.279524e-02	ci left: 4.695242e-03	ci right 5.000860e-03	k: 3877	n:800000
Cons ci ratio: 4.939283e-03	ci left: 4.394155e-01	ci right 4.415925e-01	k: 352403	n:800000
KS ci ratio: 1.247612e-01	ci left: 1.155593e-03	ci right 1.310555e-03	k: 985	n:800000
DSPP   800000 perm   491 sec   (1631 perm/sec)   p_kst 1.231250e-03   p_cons 4.405038e-01   p_joint 4.846250e-03

Joint ci ratio: 6.244218e-02	ci left: 4.690747e-03	ci right 4.994293e-03	k: 3921	n:810000
Cons ci ratio: 4.908232e-03	ci left: 4.394691e-01	ci right 4.416326e-01	k: 356846	n:810000
KS ci ratio: 1.243211e-01	ci left: 1.149699e-03	ci right 1.303287e-03	k: 992	n:810000
DSPP   810000 perm   498 sec   (1626 perm/sec)   p_kst 1.224691e-03   p_cons 4.405506e-01   p_joint 4.840741e-03

Joint ci ratio: 6.204001e-02	ci left: 4.694770e-03	ci right 4.996549e-03	k: 3972	n:820000
Cons ci ratio: 4.877350e-03	ci left: 4.395629e-01	ci right 4.417132e-01	k: 361323	n:820000
KS ci ratio: 1.232090e-01	ci left: 1.156950e-03	ci right 1.310023e-03	k: 1010	n:820000
DSPP   820000 perm   506 sec   (1621 perm/sec)   p_kst 1.231707e-03   p_cons 4.406378e-01   p_joint 4.843902e-03

Joint ci ratio: 6.156102e-02	ci left: 4.711752e-03	ci right 5.012202e-03	k: 4034	n:830000
Cons ci ratio: 4.848204e-03	ci left: 4.395364e-01	ci right 4.416737e-01	k: 365702	n:830000
KS ci ratio: 1.222452e-01	ci left: 1.161696e-03	ci right 1.314108e-03	k: 1026	n:830000
DSPP   830000 perm   514 sec   (1615 perm/sec)   p_kst 1.236145e-03   p_cons 4.406048e-01   p_joint 4.860241e-03

Joint ci ratio: 6.134929e-02	ci left: 4.688479e-03	ci right 4.986380e-03	k: 4062	n:840000
Cons ci ratio: 4.818887e-03	ci left: 4.395808e-01	ci right 4.417053e-01	k: 370140	n:840000
KS ci ratio: 1.215958e-01	ci left: 1.160562e-03	ci right 1.311959e-03	k: 1037	n:840000
DSPP   840000 perm   522 sec   (1610 perm/sec)   p_kst 1.234524e-03   p_cons 4.406429e-01   p_joint 4.835714e-03

Joint ci ratio: 6.151097e-02	ci left: 4.608988e-03	ci right 4.902638e-03	k: 4041	n:850000
Cons ci ratio: 4.790005e-03	ci left: 4.396336e-01	ci right 4.417456e-01	k: 374586	n:850000
KS ci ratio: 1.207839e-01	ci left: 1.162880e-03	ci right 1.313493e-03	k: 1051	n:850000
DSPP   850000 perm   531 sec   (1601 perm/sec)   p_kst 1.236471e-03   p_cons 4.406894e-01   p_joint 4.754118e-03

Joint ci ratio: 6.179751e-02	ci left: 4.513029e-03	ci right 4.801951e-03	k: 4004	n:860000
Cons ci ratio: 4.762601e-03	ci left: 4.395852e-01	ci right 4.416849e-01	k: 378946	n:860000
KS ci ratio: 1.202708e-01	ci left: 1.159507e-03	ci right 1.309001e-03	k: 1060	n:860000
DSPP   860000 perm   539 sec   (1596 perm/sec)   p_kst 1.232558e-03   p_cons 4.406349e-01   p_joint 4.655814e-03

Joint ci ratio: 6.173725e-02	ci left: 4.470205e-03	ci right 4.756097e-03	k: 4012	n:870000
Cons ci ratio: 4.735729e-03	ci left: 4.395311e-01	ci right 4.416187e-01	k: 383300	n:870000
KS ci ratio: 1.199326e-01	ci left: 1.152869e-03	ci right 1.301059e-03	k: 1066	n:870000
DSPP   870000 perm   556 sec   (1566 perm/sec)   p_kst 1.225287e-03   p_cons 4.405747e-01   p_joint 4.611494e-03

Joint ci ratio: 6.309577e-02	ci left: 4.229224e-03	ci right 4.505873e-03	k: 3842	n:880000
Cons ci ratio: 4.708688e-03	ci left: 4.395430e-01	ci right 4.416187e-01	k: 387711	n:880000
KS ci ratio: 1.191533e-01	ci left: 1.155202e-03	ci right 1.302658e-03	k: 1080	n:880000
DSPP   880000 perm   572 sec   (1538 perm/sec)   p_kst 1.227273e-03   p_cons 4.405807e-01   p_joint 4.365909e-03

Joint ci ratio: 6.303969e-02	ci left: 4.189443e-03	ci right 4.463237e-03	k: 3849	n:890000
Cons ci ratio: 4.682040e-03	ci left: 4.395615e-01	ci right 4.416254e-01	k: 392128	n:890000
KS ci ratio: 1.187151e-01	ci left: 1.150943e-03	ci right 1.297278e-03	k: 1088	n:890000
DSPP   890000 perm   589 sec   (1512 perm/sec)   p_kst 1.222472e-03   p_cons 4.405933e-01   p_joint 4.324719e-03

Joint ci ratio: 6.276349e-02	ci left: 4.180076e-03	ci right 4.452018e-03	k: 3883	n:900000
Cons ci ratio: 4.656008e-03	ci left: 4.395617e-01	ci right 4.416142e-01	k: 396529	n:900000
KS ci ratio: 1.181201e-01	ci left: 1.150015e-03	ci right 1.295448e-03	k: 1099	n:900000
DSPP   900000 perm   606 sec   (1485 perm/sec)   p_kst 1.221111e-03   p_cons 4.405878e-01   p_joint 4.314444e-03

Joint ci ratio: 6.287074e-02	ci left: 4.120076e-03	ci right 4.388589e-03	k: 3870	n:910000
Cons ci ratio: 4.631758e-03	ci left: 4.394181e-01	ci right 4.414592e-01	k: 400799	n:910000
KS ci ratio: 1.172701e-01	ci left: 1.154442e-03	ci right 1.299312e-03	k: 1115	n:910000
DSPP   910000 perm   623 sec   (1460 perm/sec)   p_kst 1.225275e-03   p_cons 4.404385e-01   p_joint 4.252747e-03

Joint ci ratio: 6.270163e-02	ci left: 4.097759e-03	ci right 4.364073e-03	k: 3891	n:920000
Cons ci ratio: 4.605982e-03	ci left: 4.394809e-01	ci right 4.415108e-01	k: 405256	n:920000
KS ci ratio: 1.167483e-01	ci left: 1.152445e-03	ci right 1.296377e-03	k: 1125	n:920000
DSPP   920000 perm   640 sec   (1437 perm/sec)   p_kst 1.222826e-03   p_cons 4.404957e-01   p_joint 4.229348e-03

Joint ci ratio: 6.313622e-02	ci left: 3.997598e-03	ci right 4.259269e-03	k: 3838	n:930000
Cons ci ratio: 4.580802e-03	ci left: 4.395240e-01	ci right 4.415430e-01	k: 409696	n:930000
KS ci ratio: 1.158259e-01	ci left: 1.158846e-03	ci right 1.302354e-03	k: 1143	n:930000
DSPP   930000 perm   660 sec   (1410 perm/sec)   p_kst 1.229032e-03   p_cons 4.405333e-01   p_joint 4.126882e-03

Joint ci ratio: 5.865711e-02	ci left: 4.589987e-03	ci right 4.868398e-03	k: 4444	n:940000
Cons ci ratio: 4.556138e-03	ci left: 4.395546e-01	ci right 4.415628e-01	k: 414125	n:940000
KS ci ratio: 1.151733e-01	ci left: 1.159948e-03	ci right 1.302729e-03	k: 1156	n:940000
DSPP   940000 perm   686 sec   (1370 perm/sec)   p_kst 1.229787e-03   p_cons 4.405585e-01   p_joint 4.727660e-03

Joint ci ratio: 5.836904e-02	ci left: 4.587309e-03	ci right 4.864145e-03	k: 4488	n:950000
Cons ci ratio: 4.532120e-03	ci left: 4.395571e-01	ci right 4.415548e-01	k: 418528	n:950000
KS ci ratio: 1.146789e-01	ci left: 1.157961e-03	ci right 1.299845e-03	k: 1166	n:950000
DSPP   950000 perm   704 sec   (1349 perm/sec)   p_kst 1.227368e-03   p_cons 4.405558e-01   p_joint 4.724211e-03

Joint ci ratio: 5.952037e-02	ci left: 4.364010e-03	ci right 4.632743e-03	k: 4317	n:960000
Cons ci ratio: 4.508964e-03	ci left: 4.395066e-01	ci right 4.414938e-01	k: 422880	n:960000
KS ci ratio: 1.141908e-01	ci left: 1.156018e-03	ci right 1.297019e-03	k: 1176	n:960000
DSPP   960000 perm   722 sec   (1330 perm/sec)   p_kst 1.225000e-03   p_cons 4.405000e-01   p_joint 4.496875e-03

Joint ci ratio: 5.923309e-02	ci left: 4.361676e-03	ci right 4.628925e-03	k: 4359	n:970000
Cons ci ratio: 4.484536e-03	ci left: 4.396354e-01	ci right 4.416124e-01	k: 427405	n:970000
KS ci ratio: 1.135653e-01	ci left: 1.157120e-03	ci right 1.297432e-03	k: 1189	n:970000
DSPP   970000 perm   732 sec   (1325 perm/sec)   p_kst 1.225773e-03   p_cons 4.406237e-01   p_joint 4.493814e-03

Joint ci ratio: 5.917994e-02	ci left: 4.325209e-03	ci right 4.589978e-03	k: 4367	n:980000
Cons ci ratio: 4.462015e-03	ci left: 4.395943e-01	ci right 4.415612e-01	k: 431766	n:980000
KS ci ratio: 1.131385e-01	ci left: 1.154236e-03	ci right 1.293637e-03	k: 1198	n:980000
DSPP   980000 perm   741 sec   (1323 perm/sec)   p_kst 1.222449e-03   p_cons 4.405776e-01   p_joint 4.456122e-03

Joint ci ratio: 5.960074e-02	ci left: 4.220812e-03	ci right 4.481091e-03	k: 4306	n:990000
Cons ci ratio: 4.439439e-03	ci left: 4.395975e-01	ci right 4.415544e-01	k: 436170	n:990000
KS ci ratio: 1.127164e-01	ci left: 1.151411e-03	ci right 1.289917e-03	k: 1207	n:990000
DSPP   990000 perm   750 sec   (1320 perm/sec)   p_kst 1.219192e-03   p_cons 4.405758e-01   p_joint 4.349495e-03

Joint ci ratio: 5.939465e-02	ci left: 4.208157e-03	ci right 4.466727e-03	k: 4336	n:1000000
Cons ci ratio: 4.417739e-03	ci left: 4.395407e-01	ci right 4.414877e-01	k: 440514	n:1000000
KS ci ratio: 1.120229e-01	ci left: 1.154476e-03	ci right 1.292439e-03	k: 1222	n:1000000
DSPP   1000000 perm   759 sec   (1318 perm/sec)   p_kst 1.222000e-03   p_cons 4.405140e-01   p_joint 4.336000e-03

Joint ci ratio: 5.937531e-02	ci left: 4.169416e-03	ci right 4.425519e-03	k: 4339	n:1010000
Cons ci ratio: 4.395313e-03	ci left: 4.396018e-01	ci right 4.415392e-01	k: 444976	n:1010000
KS ci ratio: 1.115678e-01	ci left: 1.152669e-03	ci right 1.289821e-03	k: 1232	n:1010000
DSPP   1010000 perm   768 sec   (1315 perm/sec)   p_kst 1.219802e-03   p_cons 4.405703e-01   p_joint 4.296040e-03

Joint ci ratio: 5.932168e-02	ci left: 4.136264e-03	ci right 4.390093e-03	k: 4347	n:1020000
Cons ci ratio: 4.374321e-03	ci left: 4.395382e-01	ci right 4.414661e-01	k: 449312	n:1020000
KS ci ratio: 1.111183e-01	ci left: 1.150900e-03	ci right 1.287252e-03	k: 1242	n:1020000
DSPP   1020000 perm   777 sec   (1312 perm/sec)   p_kst 1.217647e-03   p_cons 4.405020e-01   p_joint 4.261765e-03

Joint ci ratio: 6.016240e-02	ci left: 3.981332e-03	ci right 4.229236e-03	k: 4227	n:1030000
Cons ci ratio: 4.353497e-03	ci left: 4.394905e-01	ci right 4.414089e-01	k: 453663	n:1030000
KS ci ratio: 1.104977e-01	ci left: 1.152941e-03	ci right 1.288723e-03	k: 1256	n:1030000
DSPP   1030000 perm   788 sec   (1307 perm/sec)   p_kst 1.219417e-03   p_cons 4.404495e-01   p_joint 4.103883e-03

Joint ci ratio: 6.183028e-02	ci left: 3.730935e-03	ci right 3.969918e-03	k: 4003	n:1040000
Cons ci ratio: 4.525106e-03	ci left: 4.181870e-01	ci right 4.200846e-01	k: 435901	n:1040000
KS ci ratio: 1.097577e-01	ci left: 1.157751e-03	ci right 1.293128e-03	k: 1273	n:1040000
DSPP   1040000 perm   797 sec   (1304 perm/sec)   p_kst 1.224038e-03   p_cons 4.191356e-01   p_joint 3.849038e-03

Joint ci ratio: 5.835613e-02	ci left: 4.154150e-03	ci right 4.404787e-03	k: 4492	n:1050000
Cons ci ratio: 4.503351e-03	ci left: 4.182083e-01	ci right 4.200969e-01	k: 440110	n:1050000
KS ci ratio: 1.092019e-01	ci left: 1.158767e-03	ci right 1.293532e-03	k: 1286	n:1050000
DSPP   1050000 perm   807 sec   (1302 perm/sec)   p_kst 1.224762e-03   p_cons 4.191524e-01   p_joint 4.278095e-03

Joint ci ratio: 5.812392e-02	ci left: 4.148427e-03	ci right 4.397690e-03	k: 4528	n:1060000
Cons ci ratio: 4.482471e-03	ci left: 4.181680e-01	ci right 4.200475e-01	k: 444254	n:1060000
KS ci ratio: 1.087802e-01	ci left: 1.157012e-03	ci right 1.291020e-03	k: 1296	n:1060000
DSPP   1060000 perm   816 sec   (1299 perm/sec)   p_kst 1.222642e-03   p_cons 4.191075e-01   p_joint 4.271698e-03

Joint ci ratio: 5.836500e-02	ci left: 4.075576e-03	ci right 4.321512e-03	k: 4491	n:1070000
Cons ci ratio: 4.462256e-03	ci left: 4.180873e-01	ci right 4.199580e-01	k: 448354	n:1070000
KS ci ratio: 1.083634e-01	ci left: 1.155291e-03	ci right 1.288554e-03	k: 1306	n:1070000
DSPP   1070000 perm   826 sec   (1296 perm/sec)   p_kst 1.220561e-03   p_cons 4.190224e-01   p_joint 4.197196e-03

Joint ci ratio: 5.845113e-02	ci left: 4.025975e-03	ci right 4.269288e-03	k: 4478	n:1080000
Cons ci ratio: 4.441323e-03	ci left: 4.181164e-01	ci right 4.199784e-01	k: 452571	n:1080000
KS ci ratio: 1.078694e-01	ci left: 1.155404e-03	ci right 1.288035e-03	k: 1318	n:1080000
DSPP   1080000 perm   835 sec   (1293 perm/sec)   p_kst 1.220370e-03   p_cons 4.190472e-01   p_joint 4.146296e-03

Joint ci ratio: 5.812736e-02	ci left: 4.034243e-03	ci right 4.276660e-03	k: 4528	n:1090000
Cons ci ratio: 4.420799e-03	ci left: 4.181322e-01	ci right 4.199857e-01	k: 456774	n:1090000
KS ci ratio: 1.075439e-01	ci left: 1.151946e-03	ci right 1.283755e-03	k: 1326	n:1090000
DSPP   1090000 perm   845 sec   (1290 perm/sec)   p_kst 1.216514e-03   p_cons 4.190587e-01   p_joint 4.154128e-03

Joint ci ratio: 5.637420e-02	ci left: 4.252964e-03	ci right 4.500566e-03	k: 4813	n:1100000
Cons ci ratio: 4.401173e-03	ci left: 4.180795e-01	ci right 4.199245e-01	k: 460902	n:1100000
KS ci ratio: 1.067819e-01	ci left: 1.158284e-03	ci right 1.289820e-03	k: 1345	n:1100000
DSPP   1100000 perm   854 sec   (1287 perm/sec)   p_kst 1.222727e-03   p_cons 4.190018e-01   p_joint 4.375455e-03

Joint ci ratio: 5.614735e-02	ci left: 4.249290e-03	ci right 4.495650e-03	k: 4852	n:1110000
Cons ci ratio: 4.379877e-03	ci left: 4.182422e-01	ci right 4.200789e-01	k: 465268	n:1110000
KS ci ratio: 1.063090e-01	ci left: 1.158371e-03	ci right 1.289299e-03	k: 1357	n:1110000
DSPP   1110000 perm   864 sec   (1285 perm/sec)   p_kst 1.222523e-03   p_cons 4.191604e-01   p_joint 4.371171e-03

Joint ci ratio: 5.764696e-02	ci left: 3.993056e-03	ci right 4.230948e-03	k: 4604	n:1120000
Cons ci ratio: 4.360077e-03	ci left: 4.182690e-01	ci right 4.200975e-01	k: 469485	n:1120000
KS ci ratio: 1.059587e-01	ci left: 1.155851e-03	ci right 1.286036e-03	k: 1366	n:1120000
DSPP   1120000 perm   874 sec   (1282 perm/sec)   p_kst 1.219643e-03   p_cons 4.191830e-01   p_joint 4.110714e-03

Joint ci ratio: 5.739204e-02	ci left: 3.993480e-03	ci right 4.230311e-03	k: 4645	n:1130000
Cons ci ratio: 4.340086e-03	ci left: 4.183466e-01	ci right 4.201671e-01	k: 473760	n:1130000
KS ci ratio: 1.054201e-01	ci left: 1.157684e-03	ci right 1.287372e-03	k: 1380	n:1130000
DSPP   1130000 perm   883 sec   (1279 perm/sec)   p_kst 1.221239e-03   p_cons 4.192566e-01   p_joint 4.110619e-03

Joint ci ratio: 5.748010e-02	ci left: 3.946343e-03	ci right 4.180749e-03	k: 4631	n:1140000
Cons ci ratio: 4.320810e-03	ci left: 4.183729e-01	ci right 4.201854e-01	k: 477978	n:1140000
KS ci ratio: 1.050406e-01	ci left: 1.156070e-03	ci right 1.285082e-03	k: 1390	n:1140000
DSPP   1140000 perm   893 sec   (1276 perm/sec)   p_kst 1.219298e-03   p_cons 4.192789e-01   p_joint 4.062281e-03

Joint ci ratio: 5.740030e-02	ci left: 3.923167e-03	ci right 4.155863e-03	k: 4644	n:1150000
Cons ci ratio: 4.302358e-03	ci left: 4.183345e-01	ci right 4.201390e-01	k: 482122	n:1150000
KS ci ratio: 1.048151e-01	ci left: 1.151098e-03	ci right 1.279262e-03	k: 1396	n:1150000
DSPP   1150000 perm   903 sec   (1274 perm/sec)   p_kst 1.213913e-03   p_cons 4.192365e-01   p_joint 4.038261e-03

Joint ci ratio: 5.709970e-02	ci left: 3.930984e-03	ci right 4.162882e-03	k: 4693	n:1160000
Cons ci ratio: 4.283564e-03	ci left: 4.183622e-01	ci right 4.201589e-01	k: 486342	n:1160000
KS ci ratio: 1.043307e-01	ci left: 1.152088e-03	ci right 1.279733e-03	k: 1409	n:1160000
DSPP   1160000 perm   913 sec   (1271 perm/sec)   p_kst 1.214655e-03   p_cons 4.192603e-01   p_joint 4.045690e-03

Joint ci ratio: 5.682785e-02	ci left: 3.935300e-03	ci right 4.166311e-03	k: 4738	n:1170000
Cons ci ratio: 4.265403e-03	ci left: 4.183450e-01	ci right 4.201340e-01	k: 490510	n:1170000
KS ci ratio: 1.036345e-01	ci left: 1.158059e-03	ci right 1.285457e-03	k: 1428	n:1170000
DSPP   1170000 perm   923 sec   (1268 perm/sec)   p_kst 1.220513e-03   p_cons 4.192393e-01   p_joint 4.049573e-03

Joint ci ratio: 5.751525e-02	ci left: 3.808384e-03	ci right 4.034739e-03	k: 4626	n:1180000
Cons ci ratio: 4.246821e-03	ci left: 4.184027e-01	ci right 4.201842e-01	k: 494766	n:1180000
KS ci ratio: 1.032021e-01	ci left: 1.158151e-03	ci right 1.284996e-03	k: 1440	n:1180000
DSPP   1180000 perm   933 sec   (1265 perm/sec)   p_kst 1.220339e-03   p_cons 4.192932e-01   p_joint 3.920339e-03

Joint ci ratio: 5.798992e-02	ci left: 3.714261e-03	ci right 3.936904e-03	k: 4551	n:1190000
Cons ci ratio: 4.228654e-03	ci left: 4.184392e-01	ci right 4.202132e-01	k: 498998	n:1190000
KS ci ratio: 1.026337e-01	ci left: 1.161518e-03	ci right 1.287988e-03	k: 1456	n:1190000
DSPP   1190000 perm   943 sec   (1262 perm/sec)   p_kst 1.223529e-03   p_cons 4.193261e-01   p_joint 3.824370e-03

Joint ci ratio: 5.799085e-02	ci left: 3.683307e-03	ci right 3.904099e-03	k: 4551	n:1200000
Cons ci ratio: 4.211014e-03	ci left: 4.184411e-01	ci right 4.202077e-01	k: 503189	n:1200000
KS ci ratio: 1.022485e-01	ci left: 1.160771e-03	ci right 1.286657e-03	k: 1467	n:1200000
DSPP   1200000 perm   953 sec   (1259 perm/sec)   p_kst 1.222500e-03   p_cons 4.193242e-01   p_joint 3.792500e-03

Joint ci ratio: 5.781989e-02	ci left: 3.674857e-03	ci right 3.894471e-03	k: 4578	n:1210000
Cons ci ratio: 4.193252e-03	ci left: 4.184825e-01	ci right 4.202418e-01	k: 507428	n:1210000
KS ci ratio: 1.019021e-01	ci left: 1.159231e-03	ci right 1.284499e-03	k: 1477	n:1210000
DSPP   1210000 perm   963 sec   (1256 perm/sec)   p_kst 1.220661e-03   p_cons 4.193620e-01   p_joint 3.783471e-03

Joint ci ratio: 5.602533e-02	ci left: 3.884725e-03	ci right 4.109443e-03	k: 4875	n:1220000
Cons ci ratio: 4.175986e-03	ci left: 4.184914e-01	ci right 4.202434e-01	k: 511628	n:1220000
KS ci ratio: 1.015934e-01	ci left: 1.156918e-03	ci right 1.281535e-03	k: 1486	n:1220000
DSPP   1220000 perm   974 sec   (1253 perm/sec)   p_kst 1.218033e-03   p_cons 4.193672e-01   p_joint 3.995902e-03

Joint ci ratio: 5.585971e-02	ci left: 3.876389e-03	ci right 4.099940e-03	k: 4904	n:1230000
Cons ci ratio: 4.159154e-03	ci left: 4.184741e-01	ci right 4.202190e-01	k: 515796	n:1230000
KS ci ratio: 1.012198e-01	ci left: 1.156229e-03	ci right 1.280286e-03	k: 1497	n:1230000
DSPP   1230000 perm   984 sec   (1250 perm/sec)   p_kst 1.217073e-03   p_cons 4.193463e-01   p_joint 3.986992e-03

Joint ci ratio: 5.456885e-02	ci left: 4.031241e-03	ci right 4.258181e-03	k: 5138	n:1240000
Cons ci ratio: 4.141989e-03	ci left: 4.185200e-01	ci right 4.202578e-01	k: 520042	n:1240000
KS ci ratio: 1.009172e-01	ci left: 1.153979e-03	ci right 1.277402e-03	k: 1506	n:1240000
DSPP   1240000 perm   995 sec   (1247 perm/sec)   p_kst 1.214516e-03   p_cons 4.193887e-01   p_joint 4.143548e-03

Joint ci ratio: 5.476808e-02	ci left: 3.969793e-03	ci right 4.194115e-03	k: 5101	n:1250000
Cons ci ratio: 4.125333e-03	ci left: 4.185299e-01	ci right 4.202608e-01	k: 524244	n:1250000
KS ci ratio: 1.003856e-01	ci left: 1.157225e-03	ci right 1.280305e-03	k: 1522	n:1250000
DSPP   1250000 perm   1005 sec   (1243 perm/sec)   p_kst 1.217600e-03   p_cons 4.193952e-01   p_joint 4.080800e-03

Joint ci ratio: 5.468295e-02	ci left: 3.950810e-03	ci right 4.173702e-03	k: 5117	n:1260000
Cons ci ratio: 4.108327e-03	ci left: 4.186048e-01	ci right 4.203289e-01	k: 528528	n:1260000
KS ci ratio: 1.001559e-01	ci left: 1.153457e-03	ci right 1.275839e-03	k: 1529	n:1260000
DSPP   1260000 perm   1016 sec   (1240 perm/sec)   p_kst 1.213492e-03   p_cons 4.194667e-01   p_joint 4.061111e-03

Joint ci ratio: 5.457153e-02	ci left: 3.936010e-03	ci right 4.157600e-03	k: 5138	n:1270000
Cons ci ratio: 4.092185e-03	ci left: 4.186006e-01	ci right 4.203179e-01	k: 532713	n:1270000
KS ci ratio: 9.989519e-02	ci left: 1.150516e-03	ci right 1.272250e-03	k: 1537	n:1270000
DSPP   1270000 perm   1028 sec   (1236 perm/sec)   p_kst 1.210236e-03   p_cons 4.194591e-01   p_joint 4.045669e-03

Outputting figure to mutsig2_images.part000000000053/DSPP.5_3922_1270000_0.0012102_0.41946_0.0040457.png
                gene_name: DSPP
               theta_stop: 0.100 
                    nperm: 1270000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 51 percent done.
DVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
DVL3   10000 perm   2 sec   (4593 perm/sec)   p_kst 6.530000e-02   p_cons 4.310000e-02   p_joint 7.400000e-02

Joint ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
Cons ci ratio: 1.275416e-01	ci left: 4.221676e-02	ci right 4.801642e-02	k: 901	n:20000
KS ci ratio: 1.037251e-01	ci left: 6.318274e-02	ci right 7.014389e-02	k: 1332	n:20000
DVL3   20000 perm   4 sec   (4469 perm/sec)   p_kst 6.660000e-02   p_cons 4.505000e-02   p_joint 6.405000e-02

Joint ci ratio: 9.211004e-02	ci left: 5.430500e-02	ci right 5.958121e-02	k: 1707	n:30000
Cons ci ratio: 1.059128e-01	ci left: 4.134938e-02	ci right 4.600618e-02	k: 1309	n:30000
KS ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
DVL3   30000 perm   7 sec   (4463 perm/sec)   p_kst 6.576667e-02   p_cons 4.363333e-02   p_joint 5.690000e-02

Joint ci ratio: 7.949883e-02	ci left: 5.501754e-02	ci right 5.959699e-02	k: 2291	n:40000
Cons ci ratio: 9.334650e-02	ci left: 4.025059e-02	ci right 4.421621e-02	k: 1688	n:40000
KS ci ratio: 7.469018e-02	ci left: 6.201368e-02	ci right 6.684979e-02	k: 2576	n:40000
DVL3   40000 perm   9 sec   (4429 perm/sec)   p_kst 6.440000e-02   p_cons 4.220000e-02   p_joint 5.727500e-02

Outputting figure to mutsig2_images.part000000000053/DVL3.5_2211_40000_0.0644_0.0422_0.057275.png
                gene_name: DVL3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 53 percent done.
DYNC2LI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
KS ci ratio: 4.071259e-02	ci left: 4.711640e-01	ci right 4.908471e-01	k: 4810	n:10000
DYNC2LI1   10000 perm   2 sec   (4673 perm/sec)   p_kst 4.810000e-01   p_cons 1.052000e-01   p_joint 3.481000e-01

Joint ci ratio: 4.504561e-02	ci left: 2.684227e-01	ci right 2.808429e-01	k: 5492	n:20000
Cons ci ratio: 7.978301e-02	ci left: 1.033868e-01	ci right 1.120276e-01	k: 2153	n:20000
KS ci ratio: 2.866100e-02	ci left: 4.763022e-01	ci right 4.902026e-01	k: 9665	n:20000
DYNC2LI1   20000 perm   9 sec   (2287 perm/sec)   p_kst 4.832500e-01   p_cons 1.076500e-01   p_joint 2.746000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC2LI1.5_1219_20000_0.48325_0.10765_0.2746.png
                gene_name: DYNC2LI1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 54 percent done.
DSTYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
DSTYK   10000 perm   2 sec   (4539 perm/sec)   p_kst 3.829000e-01   p_cons 4.551000e-01   p_joint 6.103000e-01

Outputting figure to mutsig2_images.part000000000053/DSTYK.4_2842_10000_0.3829_0.4551_0.6103.png
                gene_name: DSTYK
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 56 percent done.
DTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
Cons ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
KS ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
DTX1   10000 perm   2 sec   (4241 perm/sec)   p_kst 8.219000e-01   p_cons 1.236000e-01   p_joint 4.724000e-01

Joint ci ratio: 3.623941e-02	ci left: 3.623568e-01	ci right 3.757813e-01	k: 7381	n:20000
Cons ci ratio: 7.202407e-02	ci left: 1.243344e-01	ci right 1.336738e-01	k: 2579	n:20000
KS ci ratio: 1.263169e-02	ci left: 8.227479e-01	ci right 8.332566e-01	k: 16561	n:20000
DTX1   20000 perm   7 sec   (2723 perm/sec)   p_kst 8.280500e-01   p_cons 1.289500e-01   p_joint 3.690500e-01

Outputting figure to mutsig2_images.part000000000053/DTX1.4_1899_20000_0.82805_0.12895_0.36905.png
                gene_name: DTX1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 58 percent done.
DTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
DTX3   10000 perm   2 sec   (4968 perm/sec)   p_kst 1.064000e-01   p_cons 1.951000e-01   p_joint 8.470000e-02

Joint ci ratio: 9.859149e-02	ci left: 6.962745e-02	ci right 7.689721e-02	k: 1464	n:20000
Cons ci ratio: 5.547982e-02	ci left: 1.941785e-01	ci right 2.053090e-01	k: 3994	n:20000
KS ci ratio: 8.094596e-02	ci left: 1.006859e-01	ci right 1.092293e-01	k: 2098	n:20000
DTX3   20000 perm   7 sec   (3037 perm/sec)   p_kst 1.049000e-01   p_cons 1.997000e-01   p_joint 7.320000e-02

Outputting figure to mutsig2_images.part000000000053/DTX3.4_1060_20000_0.1049_0.1997_0.0732.png
                gene_name: DTX3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 60 percent done.
DRGX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
Cons ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
KS ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
DRGX   10000 perm   3 sec   (3509 perm/sec)   p_kst 2.386000e-01   p_cons 8.461000e-01   p_joint 3.591000e-01

Outputting figure to mutsig2_images.part000000000053/DRGX.3_830_10000_0.2386_0.8461_0.3591.png
                gene_name: DRGX
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
DUSP15
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 63 percent done.
DUSP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
DUSP6   10000 perm   2 sec   (5403 perm/sec)   p_kst 5.110000e-02   p_cons 3.319000e-01   p_joint 7.100000e-02

Joint ci ratio: 9.576406e-02	ci left: 7.358645e-02	ci right 8.103699e-02	k: 1545	n:20000
Cons ci ratio: 3.949584e-02	ci left: 3.234337e-01	ci right 3.365158e-01	k: 6599	n:20000
KS ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
DUSP6   20000 perm   7 sec   (2754 perm/sec)   p_kst 5.115000e-02   p_cons 3.299500e-01   p_joint 7.725000e-02

Joint ci ratio: 9.003241e-02	ci left: 5.675135e-02	ci right 6.213436e-02	k: 1782	n:30000
Cons ci ratio: 3.270825e-02	ci left: 3.184393e-01	ci right 3.290616e-01	k: 9712	n:30000
KS ci ratio: 9.779484e-02	ci left: 4.834209e-02	ci right 5.334535e-02	k: 1524	n:30000
DUSP6   30000 perm   12 sec   (2505 perm/sec)   p_kst 5.080000e-02   p_cons 3.237333e-01   p_joint 5.940000e-02

Outputting figure to mutsig2_images.part000000000053/DUSP6.3_1158_30000_0.0508_0.32373_0.0594.png
                gene_name: DUSP6
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 65 percent done.
DYDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
DYDC2   10000 perm   6 sec   (1540 perm/sec)   p_kst 8.730000e-01   p_cons 1.503000e-01   p_joint 6.349000e-01

Outputting figure to mutsig2_images.part000000000053/DYDC2.3_546_10000_0.873_0.1503_0.6349.png
                gene_name: DYDC2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 67 percent done.
DYM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
DYM   10000 perm   2 sec   (4704 perm/sec)   p_kst 7.169000e-01   p_cons 2.000000e-02   p_joint 2.260000e-01

Joint ci ratio: 6.197228e-02	ci left: 1.615090e-01	ci right 1.718881e-01	k: 3333	n:20000
Cons ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
KS ci ratio: 1.768876e-02	ci left: 7.042599e-01	ci right 7.168789e-01	k: 14212	n:20000
DYM   20000 perm   15 sec   (1366 perm/sec)   p_kst 7.106000e-01   p_cons 1.955000e-02   p_joint 1.666500e-01

Joint ci ratio: 6.819902e-02	ci left: 9.580678e-02	ci right 1.026044e-01	k: 2975	n:30000
Cons ci ratio: 1.573553e-01	ci left: 1.867001e-02	ci right 2.189050e-02	k: 607	n:30000
KS ci ratio: 1.449678e-02	ci left: 7.038903e-01	ci right 7.142025e-01	k: 21272	n:30000
DYM   30000 perm   25 sec   (1202 perm/sec)   p_kst 7.090667e-01   p_cons 2.023333e-02   p_joint 9.916667e-02

Joint ci ratio: 3.407527e-02	ci left: 2.443455e-01	ci right 2.528410e-01	k: 9943	n:40000
Cons ci ratio: 1.340683e-01	ci left: 1.952050e-02	ci right 2.234965e-02	k: 836	n:40000
KS ci ratio: 1.254677e-02	ci left: 7.048476e-01	ci right 7.137720e-01	k: 28373	n:40000
DYM   40000 perm   33 sec   (1201 perm/sec)   p_kst 7.093250e-01   p_cons 2.090000e-02   p_joint 2.485750e-01

Joint ci ratio: 3.427894e-02	ci left: 2.037539e-01	ci right 2.108801e-01	k: 10365	n:50000
Cons ci ratio: 1.199879e-01	ci left: 1.964460e-02	ci right 2.217145e-02	k: 1044	n:50000
KS ci ratio: 1.124466e-02	ci left: 7.044946e-01	ci right 7.124812e-01	k: 35425	n:50000
DYM   50000 perm   38 sec   (1322 perm/sec)   p_kst 7.085000e-01   p_cons 2.088000e-02   p_joint 2.073000e-01

Joint ci ratio: 4.747951e-02	ci left: 9.958931e-02	ci right 1.044493e-01	k: 6120	n:60000
Cons ci ratio: 1.109424e-01	ci left: 1.925135e-02	ci right 2.152870e-02	k: 1222	n:60000
KS ci ratio: 1.027778e-02	ci left: 7.043268e-01	ci right 7.116197e-01	k: 42479	n:60000
DYM   60000 perm   42 sec   (1413 perm/sec)   p_kst 7.079833e-01   p_cons 2.036667e-02   p_joint 1.020000e-01

Joint ci ratio: 2.535329e-02	ci left: 2.513332e-01	ci right 2.578014e-01	k: 17819	n:70000
Cons ci ratio: 1.038263e-01	ci left: 1.891999e-02	ci right 2.100579e-02	k: 1396	n:70000
KS ci ratio: 9.561371e-03	ci left: 7.025950e-01	ci right 7.093593e-01	k: 49419	n:70000
DYM   70000 perm   47 sec   (1479 perm/sec)   p_kst 7.059857e-01   p_cons 1.994286e-02   p_joint 2.545571e-01

Joint ci ratio: 2.296416e-02	ci left: 2.639118e-01	ci right 2.700551e-01	k: 21358	n:80000
Cons ci ratio: 9.801941e-02	ci left: 1.863842e-02	ci right 2.057164e-02	k: 1567	n:80000
KS ci ratio: 8.933850e-03	ci left: 7.032807e-01	ci right 7.096043e-01	k: 56516	n:80000
DYM   80000 perm   52 sec   (1529 perm/sec)   p_kst 7.064500e-01   p_cons 1.958750e-02   p_joint 2.669750e-01

Outputting figure to mutsig2_images.part000000000053/DYM.3_2074_80000_0.70645_0.019588_0.26698.png
                gene_name: DYM
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 68 percent done.
DRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
DRG2   10000 perm   2 sec   (5342 perm/sec)   p_kst 2.336000e-01   p_cons 5.750000e-01   p_joint 4.503000e-01

Outputting figure to mutsig2_images.part000000000053/DRG2.2_1147_10000_0.2336_0.575_0.4503.png
                gene_name: DRG2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 70 percent done.
DTNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
Cons ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
KS ci ratio: 3.813473e-02	ci left: 5.038511e-01	ci right 5.235409e-01	k: 5137	n:10000
DTNB   10000 perm   3 sec   (2981 perm/sec)   p_kst 5.137000e-01   p_cons 5.370000e-02   p_joint 1.586000e-01

Joint ci ratio: 3.840512e-02	ci left: 3.358718e-01	ci right 3.490741e-01	k: 6849	n:20000
Cons ci ratio: 1.166432e-01	ci left: 5.032418e-02	ci right 5.660644e-02	k: 1068	n:20000
KS ci ratio: 2.713507e-02	ci left: 5.036459e-01	ci right 5.175510e-01	k: 10212	n:20000
DTNB   20000 perm   8 sec   (2391 perm/sec)   p_kst 5.106000e-01   p_cons 5.340000e-02   p_joint 3.424500e-01

Joint ci ratio: 3.676274e-02	ci left: 2.697538e-01	ci right 2.798899e-01	k: 8244	n:30000
Cons ci ratio: 9.553883e-02	ci left: 5.058932e-02	ci right 5.569766e-02	k: 1593	n:30000
KS ci ratio: 2.224655e-02	ci left: 5.028923e-01	ci right 5.142394e-01	k: 15257	n:30000
DTNB   30000 perm   11 sec   (2689 perm/sec)   p_kst 5.085667e-01   p_cons 5.310000e-02   p_joint 2.748000e-01

Outputting figure to mutsig2_images.part000000000053/DTNB.2_1960_30000_0.50857_0.0531_0.2748.png
                gene_name: DTNB
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 72 percent done.
DTNBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
DTNBP1   10000 perm   1 sec   (6983 perm/sec)   p_kst 5.548000e-01   p_cons 7.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTNBP1.2_1197_10000_0.5548_0.7089_1.png
                gene_name: DTNBP1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
DTWD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
KS ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
DTWD2   10000 perm   1 sec   (6924 perm/sec)   p_kst 2.939000e-01   p_cons 6.114000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTWD2.2_921_10000_0.2939_0.6114_1.png
                gene_name: DTWD2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
DTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
Cons ci ratio: 3.227721e-02	ci left: 5.862053e-01	ci right 6.055388e-01	k: 5959	n:10000
KS ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
DTX2   10000 perm   2 sec   (6281 perm/sec)   p_kst 2.935000e-01   p_cons 5.959000e-01   p_joint 7.326000e-01

Outputting figure to mutsig2_images.part000000000053/DTX2.2_1905_10000_0.2935_0.5959_0.7326.png
                gene_name: DTX2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 77 percent done.
DTX3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
DTX3L   10000 perm   2 sec   (6291 perm/sec)   p_kst 5.510000e-02   p_cons 3.970000e-02   p_joint 8.550000e-02

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 1.318068e-01	ci left: 3.955227e-02	ci right 4.518176e-02	k: 846	n:20000
KS ci ratio: 1.169324e-01	ci left: 5.008111e-02	ci right 5.634959e-02	k: 1063	n:20000
DTX3L   20000 perm   5 sec   (3664 perm/sec)   p_kst 5.315000e-02   p_cons 4.230000e-02   p_joint 8.780000e-02

Joint ci ratio: 6.313516e-02	ci left: 1.102602e-01	ci right 1.174815e-01	k: 3415	n:30000
Cons ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
KS ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
DTX3L   30000 perm   10 sec   (3020 perm/sec)   p_kst 5.386667e-02   p_cons 4.230000e-02   p_joint 1.138333e-01

Joint ci ratio: 6.091139e-02	ci left: 9.095992e-02	ci right 9.669920e-02	k: 3752	n:40000
Cons ci ratio: 9.291654e-02	ci left: 4.061722e-02	ci right 4.459953e-02	k: 1703	n:40000
KS ci ratio: 8.221636e-02	ci left: 5.155987e-02	ci right 5.600519e-02	k: 2150	n:40000
DTX3L   40000 perm   14 sec   (2803 perm/sec)   p_kst 5.375000e-02   p_cons 4.257500e-02   p_joint 9.380000e-02

Outputting figure to mutsig2_images.part000000000053/DTX3L.2_2243_40000_0.05375_0.042575_0.0938.png
                gene_name: DTX3L
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 79 percent done.
DTYMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
Cons ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
KS ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
DTYMK   10000 perm   3 sec   (3583 perm/sec)   p_kst 5.849000e-01   p_cons 1.400000e-02   p_joint 7.140000e-02

Joint ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
Cons ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
KS ci ratio: 2.327527e-02	ci left: 5.795877e-01	ci right 5.932872e-01	k: 11729	n:20000
DTYMK   20000 perm   7 sec   (3075 perm/sec)   p_kst 5.864500e-01   p_cons 1.370000e-02   p_joint 5.010000e-02

Joint ci ratio: 1.181383e-01	ci left: 3.330500e-02	ci right 3.751892e-02	k: 1061	n:30000
Cons ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
KS ci ratio: 1.895431e-02	ci left: 5.821382e-01	ci right 5.933114e-01	k: 17632	n:30000
DTYMK   30000 perm   10 sec   (2923 perm/sec)   p_kst 5.877333e-01   p_cons 1.380000e-02   p_joint 3.536667e-02

Joint ci ratio: 9.693766e-02	ci left: 3.736799e-02	ci right 4.119926e-02	k: 1570	n:40000
Cons ci ratio: 1.628698e-01	ci left: 1.311139e-02	ci right 1.545990e-02	k: 570	n:40000
KS ci ratio: 1.642382e-02	ci left: 5.826320e-01	ci right 5.923053e-01	k: 23499	n:40000
DTYMK   40000 perm   16 sec   (2504 perm/sec)   p_kst 5.874750e-01   p_cons 1.425000e-02   p_joint 3.925000e-02

Joint ci ratio: 8.676714e-02	ci left: 3.751573e-02	ci right 4.093804e-02	k: 1960	n:50000
Cons ci ratio: 1.459611e-01	ci left: 1.318122e-02	ci right 1.527573e-02	k: 710	n:50000
KS ci ratio: 1.466682e-02	ci left: 5.839112e-01	ci right 5.925586e-01	k: 29412	n:50000
DTYMK   50000 perm   22 sec   (2261 perm/sec)   p_kst 5.882400e-01   p_cons 1.420000e-02   p_joint 3.920000e-02

Joint ci ratio: 6.956135e-02	ci left: 4.851544e-02	ci right 5.202822e-02	k: 3015	n:60000
Cons ci ratio: 1.325521e-01	ci left: 1.341360e-02	ci right 1.533379e-02	k: 861	n:60000
KS ci ratio: 1.340666e-02	ci left: 5.836486e-01	ci right 5.915429e-01	k: 35256	n:60000
DTYMK   60000 perm   29 sec   (2101 perm/sec)   p_kst 5.876000e-01   p_cons 1.435000e-02   p_joint 5.025000e-02

Joint ci ratio: 9.296335e-02	ci left: 2.361865e-02	ci right 2.593526e-02	k: 1733	n:70000
Cons ci ratio: 1.229471e-01	ci left: 1.343353e-02	ci right 1.520707e-02	k: 1001	n:70000
KS ci ratio: 1.236250e-02	ci left: 5.858880e-01	ci right 5.931903e-01	k: 41268	n:70000
DTYMK   70000 perm   35 sec   (1986 perm/sec)   p_kst 5.895429e-01   p_cons 1.430000e-02   p_joint 2.475714e-02

Joint ci ratio: 4.760799e-02	ci left: 7.626205e-02	ci right 7.999362e-02	k: 6249	n:80000
Cons ci ratio: 1.153722e-01	ci left: 1.340368e-02	ci right 1.505682e-02	k: 1137	n:80000
KS ci ratio: 1.158483e-02	ci left: 5.852557e-01	ci right 5.920878e-01	k: 47094	n:80000
DTYMK   80000 perm   41 sec   (1972 perm/sec)   p_kst 5.886750e-01   p_cons 1.421250e-02   p_joint 7.811250e-02

Joint ci ratio: 6.551567e-02	ci left: 3.700081e-02	ci right 3.951795e-02	k: 3442	n:90000
Cons ci ratio: 1.087417e-01	ci left: 1.345878e-02	ci right 1.501720e-02	k: 1280	n:90000
KS ci ratio: 1.092349e-02	ci left: 5.853990e-01	ci right 5.918398e-01	k: 52976	n:90000
DTYMK   90000 perm   49 sec   (1847 perm/sec)   p_kst 5.886222e-01   p_cons 1.422222e-02   p_joint 3.824444e-02

Joint ci ratio: 6.210771e-02	ci left: 3.711890e-02	ci right 3.950798e-02	k: 3830	n:100000
Cons ci ratio: 1.029904e-01	ci left: 1.354403e-02	ci right 1.502434e-02	k: 1427	n:100000
KS ci ratio: 1.034695e-02	ci left: 5.863134e-01	ci right 5.924214e-01	k: 58937	n:100000
DTYMK   100000 perm   59 sec   (1699 perm/sec)   p_kst 5.893700e-01   p_cons 1.427000e-02   p_joint 3.830000e-02

Joint ci ratio: 5.610627e-02	ci left: 4.129748e-02	ci right 4.369035e-02	k: 4673	n:110000
Cons ci ratio: 9.841384e-02	ci left: 1.351797e-02	ci right 1.492599e-02	k: 1563	n:110000
KS ci ratio: 9.865758e-03	ci left: 5.864405e-01	ci right 5.922639e-01	k: 64829	n:110000
DTYMK   110000 perm   66 sec   (1661 perm/sec)   p_kst 5.893545e-01   p_cons 1.420909e-02   p_joint 4.248182e-02

Outputting figure to mutsig2_images.part000000000053/DTYMK.2_659_110000_0.58935_0.014209_0.042482.png
                gene_name: DTYMK
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 81 percent done.
DUOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
Cons ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
KS ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
DUOXA1   10000 perm   1 sec   (6671 perm/sec)   p_kst 3.026000e-01   p_cons 5.270000e-02   p_joint 1.955000e-01

Joint ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 4.186173e-02	ci left: 2.983744e-01	ci right 3.111824e-01	k: 6095	n:20000
DUOXA1   20000 perm   5 sec   (3838 perm/sec)   p_kst 3.047500e-01   p_cons 5.405000e-02   p_joint 1.168000e-01

Joint ci ratio: 6.426585e-02	ci left: 1.067763e-01	ci right 1.138993e-01	k: 3309	n:30000
Cons ci ratio: 9.390133e-02	ci left: 5.231636e-02	ci right 5.750360e-02	k: 1646	n:30000
KS ci ratio: 3.420420e-02	ci left: 2.992618e-01	ci right 3.097094e-01	k: 9134	n:30000
DUOXA1   30000 perm   9 sec   (3264 perm/sec)   p_kst 3.044667e-01   p_cons 5.486667e-02   p_joint 1.103000e-01

Outputting figure to mutsig2_images.part000000000053/DUOXA1.2_1484_30000_0.30447_0.054867_0.1103.png
                gene_name: DUOXA1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 82 percent done.
DUS3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
DUS3L   10000 perm   2 sec   (4913 perm/sec)   p_kst 1.803000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUS3L.2_2005_10000_0.1803_0.7722_1.png
                gene_name: DUS3L
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
DUSP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
DUSP11   10000 perm   6 sec   (1656 perm/sec)   p_kst 1.024000e-01   p_cons 2.997000e-01   p_joint 6.554000e-01

Joint ci ratio: 3.436937e-02	ci left: 3.872687e-01	ci right 4.008622e-01	k: 7881	n:20000
Cons ci ratio: 4.215493e-02	ci left: 2.954423e-01	ci right 3.082153e-01	k: 6036	n:20000
KS ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
DUSP11   20000 perm   15 sec   (1369 perm/sec)   p_kst 1.054500e-01   p_cons 3.018000e-01   p_joint 3.940500e-01

Outputting figure to mutsig2_images.part000000000053/DUSP11.2_1170_20000_0.10545_0.3018_0.39405.png
                gene_name: DUSP11
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 86 percent done.
DUSP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
Cons ci ratio: 7.300181e-02	ci left: 2.155637e-01	ci right 2.319975e-01	k: 2237	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
DUSP16   10000 perm   2 sec   (4906 perm/sec)   p_kst 2.274000e-01   p_cons 2.237000e-01   p_joint 1.350000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP16.2_2022_10000_0.2274_0.2237_0.135.png
                gene_name: DUSP16
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 88 percent done.
DUSP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
Cons ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
KS ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
DUSP19   10000 perm   2 sec   (5608 perm/sec)   p_kst 1.496000e-01   p_cons 3.805000e-01   p_joint 3.014000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP19.2_670_10000_0.1496_0.3805_0.3014.png
                gene_name: DUSP19
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 89 percent done.
DUSP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
DUSP21   10000 perm   2 sec   (4671 perm/sec)   p_kst 1.080000e-02   p_cons 7.292000e-01   p_joint 1.460000e-02

Joint ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
Cons ci ratio: 1.676739e-02	ci left: 7.259039e-01	ci right 7.382286e-01	k: 14642	n:20000
KS ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
DUSP21   20000 perm   6 sec   (3430 perm/sec)   p_kst 1.110000e-02   p_cons 7.321000e-01   p_joint 1.555000e-02

Joint ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
Cons ci ratio: 1.325706e-02	ci left: 7.395580e-01	ci right 7.494612e-01	k: 22336	n:30000
KS ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
DUSP21   30000 perm   10 sec   (3129 perm/sec)   p_kst 1.126667e-02   p_cons 7.445333e-01   p_joint 1.333333e-02

Joint ci ratio: 1.677029e-01	ci left: 1.234407e-02	ci right 1.462737e-02	k: 538	n:40000
Cons ci ratio: 1.191386e-02	ci left: 7.258212e-01	ci right 7.345454e-01	k: 29208	n:40000
KS ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
DUSP21   40000 perm   13 sec   (2977 perm/sec)   p_kst 1.130000e-02   p_cons 7.302000e-01   p_joint 1.345000e-02

Joint ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
Cons ci ratio: 1.065231e-02	ci left: 7.264268e-01	ci right 7.342264e-01	k: 36517	n:50000
KS ci ratio: 1.642739e-01	ci left: 1.033442e-02	ci right 1.220297e-02	k: 562	n:50000
DUSP21   50000 perm   17 sec   (2930 perm/sec)   p_kst 1.124000e-02   p_cons 7.303400e-01   p_joint 1.442000e-02

Joint ci ratio: 1.207908e-01	ci left: 1.620708e-02	ci right 1.830665e-02	k: 1034	n:60000
Cons ci ratio: 9.750286e-03	ci left: 7.257087e-01	ci right 7.328358e-01	k: 43757	n:60000
KS ci ratio: 1.505937e-01	ci left: 1.032519e-02	ci right 1.202259e-02	k: 669	n:60000
DUSP21   60000 perm   19 sec   (3083 perm/sec)   p_kst 1.115000e-02   p_cons 7.292833e-01   p_joint 1.723333e-02

Joint ci ratio: 1.130515e-01	ci left: 1.593028e-02	ci right 1.785292e-02	k: 1181	n:70000
Cons ci ratio: 9.025984e-03	ci left: 7.260206e-01	ci right 7.326176e-01	k: 51053	n:70000
KS ci ratio: 1.407644e-01	ci left: 1.018536e-02	ci right 1.174129e-02	k: 766	n:70000
DUSP21   70000 perm   22 sec   (3249 perm/sec)   p_kst 1.094286e-02   p_cons 7.293286e-01   p_joint 1.687143e-02

Joint ci ratio: 1.053092e-01	ci left: 1.612769e-02	ci right 1.793258e-02	k: 1361	n:80000
Cons ci ratio: 8.433226e-03	ci left: 7.266958e-01	ci right 7.328626e-01	k: 58383	n:80000
KS ci ratio: 1.302218e-01	ci left: 1.047019e-02	ci right 1.194058e-02	k: 895	n:80000
DUSP21   80000 perm   24 sec   (3370 perm/sec)   p_kst 1.118750e-02   p_cons 7.297875e-01   p_joint 1.701250e-02

Joint ci ratio: 8.950698e-02	ci left: 1.993187e-02	ci right 2.181030e-02	k: 1877	n:90000
Cons ci ratio: 7.932532e-03	ci left: 7.277889e-01	ci right 7.335962e-01	k: 65763	n:90000
KS ci ratio: 1.227744e-01	ci left: 1.051193e-02	ci right 1.189762e-02	k: 1007	n:90000
DUSP21   90000 perm   26 sec   (3461 perm/sec)   p_kst 1.118889e-02   p_cons 7.307000e-01   p_joint 2.085556e-02

Joint ci ratio: 8.530432e-02	ci left: 1.979710e-02	ci right 2.157086e-02	k: 2067	n:100000
Cons ci ratio: 7.518007e-03	ci left: 7.283302e-01	ci right 7.338364e-01	k: 73109	n:100000
KS ci ratio: 1.175400e-01	ci left: 1.035304e-02	ci right 1.165555e-02	k: 1099	n:100000
DUSP21   100000 perm   28 sec   (3533 perm/sec)   p_kst 1.099000e-02   p_cons 7.310900e-01   p_joint 2.067000e-02

Joint ci ratio: 8.175386e-02	ci left: 1.963508e-02	ci right 2.131761e-02	k: 2251	n:110000
Cons ci ratio: 7.158843e-03	ci left: 7.289707e-01	ci right 7.342171e-01	k: 80476	n:110000
KS ci ratio: 1.124465e-01	ci left: 1.031245e-02	ci right 1.154990e-02	k: 1201	n:110000
DUSP21   110000 perm   31 sec   (3583 perm/sec)   p_kst 1.091818e-02   p_cons 7.316000e-01   p_joint 2.046364e-02

Joint ci ratio: 7.813918e-02	ci left: 1.973839e-02	ci right 2.135157e-02	k: 2464	n:120000
Cons ci ratio: 6.858436e-03	ci left: 7.288323e-01	ci right 7.338565e-01	k: 87762	n:120000
KS ci ratio: 1.076707e-01	ci left: 1.033642e-02	ci right 1.152073e-02	k: 1310	n:120000
DUSP21   120000 perm   33 sec   (3620 perm/sec)   p_kst 1.091667e-02   p_cons 7.313500e-01   p_joint 2.053333e-02

Joint ci ratio: 7.588153e-02	ci left: 1.935153e-02	ci right 2.088537e-02	k: 2614	n:130000
Cons ci ratio: 6.585052e-03	ci left: 7.291899e-01	ci right 7.340152e-01	k: 95109	n:130000
KS ci ratio: 1.037147e-01	ci left: 1.030518e-02	ci right 1.143987e-02	k: 1412	n:130000
DUSP21   130000 perm   36 sec   (3646 perm/sec)   p_kst 1.086154e-02   p_cons 7.316077e-01   p_joint 2.010769e-02

Joint ci ratio: 7.322956e-02	ci left: 1.932213e-02	ci right 2.079784e-02	k: 2807	n:140000
Cons ci ratio: 6.342871e-03	ci left: 7.294423e-01	ci right 7.340909e-01	k: 102448	n:140000
KS ci ratio: 9.989860e-02	ci left: 1.033481e-02	ci right 1.142844e-02	k: 1522	n:140000
DUSP21   140000 perm   38 sec   (3662 perm/sec)   p_kst 1.087143e-02   p_cons 7.317714e-01   p_joint 2.005000e-02

Outputting figure to mutsig2_images.part000000000053/DUSP21.2_577_140000_0.010871_0.73177_0.02005.png
                gene_name: DUSP21
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 91 percent done.
DUSP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
Cons ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
DUSP26   10000 perm   1 sec   (6855 perm/sec)   p_kst 2.700000e-03   p_cons 9.340000e-02   p_joint 1.000000e-04

Joint ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
Cons ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
KS ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
DUSP26   20000 perm   3 sec   (5830 perm/sec)   p_kst 2.250000e-03   p_cons 9.180000e-02   p_joint 1.500000e-04

Joint ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
Cons ci ratio: 7.091607e-02	ci left: 8.914596e-02	ci right 9.573322e-02	k: 2772	n:30000
KS ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
DUSP26   30000 perm   5 sec   (5807 perm/sec)   p_kst 1.933333e-03   p_cons 9.240000e-02   p_joint 1.666667e-04

Joint ci ratio: 9.505257e-01	ci left: 2.286513e-04	ci right 6.494939e-04	k: 16	n:40000
Cons ci ratio: 6.141837e-02	ci left: 8.957923e-02	ci right 9.528010e-02	k: 3696	n:40000
KS ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
DUSP26   40000 perm   7 sec   (5736 perm/sec)   p_kst 1.825000e-03   p_cons 9.240000e-02   p_joint 4.000000e-04

Joint ci ratio: 8.171803e-01	ci left: 2.757655e-04	ci right 6.660900e-04	k: 22	n:50000
Cons ci ratio: 5.515326e-02	ci left: 8.922359e-02	ci right 9.430392e-02	k: 4587	n:50000
KS ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
DUSP26   50000 perm   9 sec   (5665 perm/sec)   p_kst 2.060000e-03   p_cons 9.174000e-02   p_joint 4.400000e-04

Joint ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
Cons ci ratio: 5.050763e-02	ci left: 8.892437e-02	ci right 9.354859e-02	k: 5473	n:60000
KS ci ratio: 3.474725e-01	ci left: 1.749648e-03	ci right 2.499817e-03	k: 126	n:60000
DUSP26   60000 perm   11 sec   (5575 perm/sec)   p_kst 2.100000e-03   p_cons 9.121667e-02   p_joint 4.500000e-04

Joint ci ratio: 7.155323e-01	ci left: 2.774706e-04	ci right 5.949296e-04	k: 29	n:70000
Cons ci ratio: 4.692019e-02	ci left: 8.854001e-02	ci right 9.280827e-02	k: 6346	n:70000
KS ci ratio: 3.286229e-01	ci left: 1.695799e-03	ci right 2.375113e-03	k: 141	n:70000
DUSP26   70000 perm   13 sec   (5483 perm/sec)   p_kst 2.014286e-03   p_cons 9.065714e-02   p_joint 4.142857e-04

Joint ci ratio: 6.822394e-01	ci left: 2.736153e-04	ci right 5.646342e-04	k: 32	n:80000
Cons ci ratio: 4.389223e-02	ci left: 8.866908e-02	ci right 9.266066e-02	k: 7252	n:80000
KS ci ratio: 3.067232e-01	ci left: 1.725422e-03	ci right 2.361557e-03	k: 162	n:80000
DUSP26   80000 perm   15 sec   (5396 perm/sec)   p_kst 2.025000e-03   p_cons 9.065000e-02   p_joint 4.000000e-04

Joint ci ratio: 6.443080e-01	ci left: 2.801703e-04	ci right 5.537260e-04	k: 36	n:90000
Cons ci ratio: 4.140608e-02	ci left: 8.868834e-02	ci right 9.244921e-02	k: 8150	n:90000
KS ci ratio: 2.886891e-01	ci left: 1.749634e-03	ci right 2.349854e-03	k: 183	n:90000
DUSP26   90000 perm   17 sec   (5312 perm/sec)   p_kst 2.033333e-03   p_cons 9.055556e-02   p_joint 4.000000e-04

Joint ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
Cons ci ratio: 3.932585e-02	ci left: 8.859988e-02	ci right 9.216392e-02	k: 9037	n:100000
KS ci ratio: 2.728365e-01	ci left: 1.779196e-03	ci right 2.350303e-03	k: 205	n:100000
DUSP26   100000 perm   19 sec   (5224 perm/sec)   p_kst 2.050000e-03   p_cons 9.037000e-02   p_joint 4.500000e-04

Joint ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
Cons ci ratio: 3.745806e-02	ci left: 8.884690e-02	ci right 9.224745e-02	k: 9959	n:110000
KS ci ratio: 2.610647e-01	ci left: 1.778624e-03	ci right 2.320895e-03	k: 224	n:110000
DUSP26   110000 perm   21 sec   (5139 perm/sec)   p_kst 2.036364e-03   p_cons 9.053636e-02   p_joint 4.727273e-04

Joint ci ratio: 4.225512e-01	ci left: 5.658295e-04	ci right 8.757918e-04	k: 85	n:120000
Cons ci ratio: 3.594429e-02	ci left: 8.855187e-02	ci right 9.180130e-02	k: 10820	n:120000
KS ci ratio: 2.476632e-01	ci left: 1.825471e-03	ci right 2.349059e-03	k: 249	n:120000
DUSP26   120000 perm   24 sec   (5057 perm/sec)   p_kst 2.075000e-03   p_cons 9.016667e-02   p_joint 7.083333e-04

Joint ci ratio: 4.177303e-01	ci left: 5.360601e-04	ci right 8.254292e-04	k: 87	n:130000
Cons ci ratio: 3.461332e-02	ci left: 8.824357e-02	ci right 9.135937e-02	k: 11673	n:130000
KS ci ratio: 2.396527e-01	ci left: 1.807835e-03	ci right 2.307102e-03	k: 266	n:130000
DUSP26   130000 perm   26 sec   (4938 perm/sec)   p_kst 2.046154e-03   p_cons 8.979231e-02   p_joint 6.692308e-04

Joint ci ratio: 4.130700e-01	ci left: 5.105609e-04	ci right 7.822438e-04	k: 89	n:140000
Cons ci ratio: 3.330624e-02	ci left: 8.853420e-02	ci right 9.153994e-02	k: 12604	n:140000
KS ci ratio: 2.319635e-01	ci left: 1.799680e-03	ci right 2.278463e-03	k: 284	n:140000
DUSP26   140000 perm   29 sec   (4841 perm/sec)   p_kst 2.028571e-03   p_cons 9.002857e-02   p_joint 6.357143e-04

Joint ci ratio: 4.020548e-01	ci left: 5.064392e-04	ci right 7.668275e-04	k: 94	n:150000
Cons ci ratio: 3.220750e-02	ci left: 8.843060e-02	ci right 9.133194e-02	k: 13481	n:150000
KS ci ratio: 2.249698e-01	ci left: 1.792834e-03	ci right 2.253422e-03	k: 302	n:150000
DUSP26   150000 perm   32 sec   (4746 perm/sec)   p_kst 2.013333e-03   p_cons 8.987333e-02   p_joint 6.266667e-04

Joint ci ratio: 4.718093e-01	ci left: 3.300438e-04	ci right 5.387581e-04	k: 68	n:160000
Cons ci ratio: 3.119766e-02	ci left: 8.840966e-02	ci right 9.121772e-02	k: 14369	n:160000
KS ci ratio: 2.192583e-01	ci left: 1.775217e-03	ci right 2.218140e-03	k: 318	n:160000
DUSP26   160000 perm   34 sec   (4661 perm/sec)   p_kst 1.987500e-03   p_cons 8.980625e-02   p_joint 4.250000e-04

Joint ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
Cons ci ratio: 3.026196e-02	ci left: 8.847424e-02	ci right 9.119859e-02	k: 15271	n:170000
KS ci ratio: 2.105253e-01	ci left: 1.821076e-03	ci right 2.255011e-03	k: 345	n:170000
DUSP26   170000 perm   37 sec   (4583 perm/sec)   p_kst 2.029412e-03   p_cons 8.982941e-02   p_joint 4.235294e-04

Joint ci ratio: 4.437552e-01	ci left: 3.376098e-04	ci right 5.346203e-04	k: 77	n:180000
Cons ci ratio: 2.941469e-02	ci left: 8.848309e-02	ci right 9.113014e-02	k: 16164	n:180000
KS ci ratio: 2.038572e-01	ci left: 1.841056e-03	ci right 2.264127e-03	k: 368	n:180000
DUSP26   180000 perm   40 sec   (4508 perm/sec)   p_kst 2.044444e-03   p_cons 8.980000e-02   p_joint 4.277778e-04

Joint ci ratio: 4.327970e-01	ci left: 3.385702e-04	ci right 5.298442e-04	k: 81	n:190000
Cons ci ratio: 2.863206e-02	ci left: 8.850766e-02	ci right 9.108382e-02	k: 17060	n:190000
KS ci ratio: 1.998389e-01	ci left: 1.819114e-03	ci right 2.227898e-03	k: 383	n:190000
DUSP26   190000 perm   43 sec   (4437 perm/sec)   p_kst 2.015789e-03   p_cons 8.978947e-02   p_joint 4.263158e-04

Joint ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
Cons ci ratio: 2.789083e-02	ci left: 8.863495e-02	ci right 9.114695e-02	k: 17977	n:200000
KS ci ratio: 1.933960e-01	ci left: 1.851763e-03	ci right 2.252889e-03	k: 409	n:200000
DUSP26   200000 perm   46 sec   (4371 perm/sec)   p_kst 2.045000e-03   p_cons 8.988500e-02   p_joint 4.300000e-04

Joint ci ratio: 4.085977e-01	ci left: 3.489069e-04	ci right 5.320111e-04	k: 91	n:210000
Cons ci ratio: 2.719801e-02	ci left: 8.878875e-02	ci right 9.124163e-02	k: 18902	n:210000
KS ci ratio: 1.897314e-01	ci left: 1.836119e-03	ci right 2.225451e-03	k: 425	n:210000
DUSP26   210000 perm   49 sec   (4303 perm/sec)   p_kst 2.023810e-03   p_cons 9.000952e-02   p_joint 4.333333e-04

Joint ci ratio: 4.042298e-01	ci left: 3.412086e-04	ci right 5.178448e-04	k: 93	n:220000
Cons ci ratio: 2.656837e-02	ci left: 8.884342e-02	ci right 9.124012e-02	k: 19808	n:220000
KS ci ratio: 1.866913e-01	ci left: 1.813295e-03	ci right 2.190928e-03	k: 439	n:220000
DUSP26   220000 perm   52 sec   (4238 perm/sec)   p_kst 1.995455e-03   p_cons 9.003636e-02   p_joint 4.227273e-04

Joint ci ratio: 4.042336e-01	ci left: 3.263729e-04	ci right 4.953309e-04	k: 93	n:230000
Cons ci ratio: 2.600882e-02	ci left: 8.871673e-02	ci right 9.105884e-02	k: 20673	n:230000
KS ci ratio: 1.827869e-01	ci left: 1.813245e-03	ci right 2.182095e-03	k: 458	n:230000
DUSP26   230000 perm   55 sec   (4178 perm/sec)   p_kst 1.991304e-03   p_cons 8.988261e-02   p_joint 4.043478e-04

Joint ci ratio: 3.919175e-01	ci left: 3.352719e-04	ci right 5.021814e-04	k: 99	n:240000
Cons ci ratio: 2.545400e-02	ci left: 8.878750e-02	ci right 9.108075e-02	k: 21583	n:240000
KS ci ratio: 1.789302e-01	ci left: 1.817254e-03	ci right 2.178276e-03	k: 478	n:240000
DUSP26   240000 perm   58 sec   (4120 perm/sec)   p_kst 1.991667e-03   p_cons 8.992917e-02   p_joint 4.125000e-04

Joint ci ratio: 3.824717e-01	ci left: 3.399144e-04	ci right 5.040314e-04	k: 104	n:250000
Cons ci ratio: 2.495456e-02	ci left: 8.871389e-02	ci right 9.095963e-02	k: 22458	n:250000
KS ci ratio: 1.751320e-01	ci left: 1.824842e-03	ci right 2.178862e-03	k: 499	n:250000
DUSP26   250000 perm   62 sec   (4060 perm/sec)   p_kst 1.996000e-03   p_cons 8.983200e-02   p_joint 4.160000e-04

Joint ci ratio: 3.753885e-01	ci left: 3.407601e-04	ci right 5.014888e-04	k: 108	n:260000
Cons ci ratio: 2.443972e-02	ci left: 8.893705e-02	ci right 9.114133e-02	k: 23409	n:260000
KS ci ratio: 1.697793e-01	ci left: 1.872426e-03	ci right 2.223438e-03	k: 531	n:260000
DUSP26   260000 perm   65 sec   (4003 perm/sec)   p_kst 2.042308e-03   p_cons 9.003462e-02   p_joint 4.153846e-04

Joint ci ratio: 3.670634e-01	ci left: 3.449306e-04	ci right 5.031534e-04	k: 113	n:270000
Cons ci ratio: 2.399066e-02	ci left: 8.890467e-02	ci right 9.106710e-02	k: 24295	n:270000
KS ci ratio: 1.674369e-01	ci left: 1.856286e-03	ci right 2.198988e-03	k: 546	n:270000
DUSP26   270000 perm   68 sec   (3949 perm/sec)   p_kst 2.022222e-03   p_cons 8.998148e-02   p_joint 4.185185e-04

Joint ci ratio: 3.577681e-01	ci left: 3.520895e-04	ci right 5.085546e-04	k: 119	n:280000
Cons ci ratio: 2.357269e-02	ci left: 8.882522e-02	ci right 9.094756e-02	k: 25167	n:280000
KS ci ratio: 1.638792e-01	ci left: 1.872153e-03	ci right 2.209716e-03	k: 570	n:280000
DUSP26   280000 perm   72 sec   (3895 perm/sec)   p_kst 2.035714e-03   p_cons 8.988214e-02   p_joint 4.250000e-04

Joint ci ratio: 3.562887e-01	ci left: 3.430871e-04	ci right 4.947751e-04	k: 120	n:290000
Cons ci ratio: 2.316946e-02	ci left: 8.879615e-02	ci right 9.088102e-02	k: 26052	n:290000
KS ci ratio: 1.624657e-01	ci left: 1.840668e-03	ci right 2.169412e-03	k: 580	n:290000
DUSP26   290000 perm   75 sec   (3843 perm/sec)   p_kst 2.000000e-03   p_cons 8.983448e-02   p_joint 4.137931e-04

Joint ci ratio: 3.477695e-01	ci left: 3.498829e-04	ci right 5.000435e-04	k: 126	n:300000
Cons ci ratio: 2.280113e-02	ci left: 8.866319e-02	ci right 9.071141e-02	k: 26905	n:300000
KS ci ratio: 1.593416e-01	ci left: 1.852893e-03	ci right 2.176848e-03	k: 603	n:300000
DUSP26   300000 perm   79 sec   (3793 perm/sec)   p_kst 2.010000e-03   p_cons 8.968333e-02   p_joint 4.200000e-04

Joint ci ratio: 3.385627e-01	ci left: 3.592317e-04	ci right 5.084315e-04	k: 133	n:310000
Cons ci ratio: 2.244404e-02	ci left: 8.858078e-02	ci right 9.059464e-02	k: 27771	n:310000
KS ci ratio: 1.557699e-01	ci left: 1.879886e-03	ci right 2.200505e-03	k: 631	n:310000
DUSP26   310000 perm   83 sec   (3744 perm/sec)   p_kst 2.035484e-03   p_cons 8.958387e-02   p_joint 4.290323e-04

Joint ci ratio: 3.336201e-01	ci left: 3.594510e-04	ci right 5.060940e-04	k: 137	n:320000
Cons ci ratio: 2.209475e-02	ci left: 8.856595e-02	ci right 9.054774e-02	k: 28657	n:320000
KS ci ratio: 1.534803e-01	ci left: 1.878217e-03	ci right 2.193410e-03	k: 650	n:320000
DUSP26   320000 perm   87 sec   (3698 perm/sec)   p_kst 2.031250e-03   p_cons 8.955312e-02   p_joint 4.281250e-04

Joint ci ratio: 2.743696e-01	ci left: 5.334564e-04	ci right 7.058125e-04	k: 203	n:330000
Cons ci ratio: 2.177058e-02	ci left: 8.848290e-02	ci right 9.043341e-02	k: 29520	n:330000
KS ci ratio: 1.510630e-01	ci left: 1.882513e-03	ci right 2.193002e-03	k: 671	n:330000
DUSP26   330000 perm   90 sec   (3651 perm/sec)   p_kst 2.033333e-03   p_cons 8.945455e-02   p_joint 6.151515e-04

Joint ci ratio: 2.723755e-01	ci left: 5.259850e-04	ci right 6.944806e-04	k: 206	n:340000
Cons ci ratio: 2.145795e-02	ci left: 8.842249e-02	ci right 9.034334e-02	k: 30389	n:340000
KS ci ratio: 1.492971e-01	ci left: 1.872435e-03	ci right 2.177329e-03	k: 687	n:340000
DUSP26   340000 perm   94 sec   (3607 perm/sec)   p_kst 2.020588e-03   p_cons 8.937941e-02   p_joint 6.058824e-04

Joint ci ratio: 2.678834e-01	ci left: 5.296027e-04	ci right 6.959893e-04	k: 213	n:350000
Cons ci ratio: 2.115543e-02	ci left: 8.838848e-02	ci right 9.028118e-02	k: 31266	n:350000
KS ci ratio: 1.469655e-01	ci left: 1.879465e-03	ci right 2.180304e-03	k: 709	n:350000
DUSP26   350000 perm   98 sec   (3565 perm/sec)   p_kst 2.025714e-03   p_cons 8.933143e-02   p_joint 6.085714e-04

Joint ci ratio: 2.654151e-01	ci left: 5.252597e-04	ci right 6.885086e-04	k: 217	n:360000
Cons ci ratio: 2.085326e-02	ci left: 8.845054e-02	ci right 9.031719e-02	k: 32177	n:360000
KS ci ratio: 1.448390e-01	ci left: 1.883462e-03	ci right 2.180201e-03	k: 730	n:360000
DUSP26   360000 perm   102 sec   (3523 perm/sec)   p_kst 2.027778e-03   p_cons 8.938056e-02   p_joint 6.027778e-04

Joint ci ratio: 2.618364e-01	ci left: 5.262082e-04	ci right 6.871856e-04	k: 223	n:370000
Cons ci ratio: 2.057152e-02	ci left: 8.844755e-02	ci right 9.028862e-02	k: 33065	n:370000
KS ci ratio: 1.430884e-01	ci left: 1.879453e-03	ci right 2.171677e-03	k: 748	n:370000
DUSP26   370000 perm   106 sec   (3481 perm/sec)   p_kst 2.021622e-03   p_cons 8.936486e-02   p_joint 6.027027e-04

Joint ci ratio: 2.578383e-01	ci left: 5.295821e-04	ci right 6.887197e-04	k: 230	n:380000
Cons ci ratio: 2.028516e-02	ci left: 8.857061e-02	ci right 9.038828e-02	k: 34001	n:380000
KS ci ratio: 1.413076e-01	ci left: 1.878215e-03	ci right 2.166305e-03	k: 767	n:380000
DUSP26   380000 perm   110 sec   (3443 perm/sec)   p_kst 2.018421e-03   p_cons 8.947632e-02   p_joint 6.052632e-04

Joint ci ratio: 2.540180e-01	ci left: 5.328007e-04	ci right 6.901576e-04	k: 237	n:390000
Cons ci ratio: 2.001483e-02	ci left: 8.865180e-02	ci right 9.044661e-02	k: 34923	n:390000
KS ci ratio: 1.393258e-01	ci left: 1.884486e-03	ci right 2.169148e-03	k: 789	n:390000
DUSP26   390000 perm   115 sec   (3405 perm/sec)   p_kst 2.023077e-03   p_cons 8.954615e-02   p_joint 6.076923e-04

Joint ci ratio: 2.519106e-01	ci left: 5.288466e-04	ci right 6.835366e-04	k: 241	n:400000
Cons ci ratio: 1.975171e-02	ci left: 8.875645e-02	ci right 9.052949e-02	k: 35856	n:400000
KS ci ratio: 1.380226e-01	ci left: 1.873572e-03	ci right 2.153720e-03	k: 804	n:400000
DUSP26   400000 perm   119 sec   (3368 perm/sec)   p_kst 2.010000e-03   p_cons 8.964000e-02   p_joint 6.025000e-04

Joint ci ratio: 2.503645e-01	ci left: 5.228043e-04	ci right 6.746419e-04	k: 244	n:410000
Cons ci ratio: 1.951793e-02	ci left: 8.869588e-02	ci right 9.044651e-02	k: 36723	n:410000
KS ci ratio: 1.368388e-01	ci left: 1.860847e-03	ci right 2.136511e-03	k: 818	n:410000
DUSP26   410000 perm   123 sec   (3330 perm/sec)   p_kst 1.995122e-03   p_cons 8.956829e-02   p_joint 5.951220e-04

Joint ci ratio: 2.483460e-01	ci left: 5.192851e-04	ci right 6.686969e-04	k: 248	n:420000
Cons ci ratio: 1.929282e-02	ci left: 8.863358e-02	ci right 9.036257e-02	k: 37588	n:420000
KS ci ratio: 1.353598e-01	ci left: 1.857938e-03	ci right 2.129958e-03	k: 836	n:420000
DUSP26   420000 perm   128 sec   (3293 perm/sec)   p_kst 1.990476e-03   p_cons 8.949524e-02   p_joint 5.904762e-04

Joint ci ratio: 2.444495e-01	ci left: 5.246649e-04	ci right 6.728966e-04	k: 256	n:430000
Cons ci ratio: 1.906961e-02	ci left: 8.862291e-02	ci right 9.033147e-02	k: 38474	n:430000
KS ci ratio: 1.338493e-01	ci left: 1.857429e-03	ci right 2.126097e-03	k: 855	n:430000
DUSP26   430000 perm   132 sec   (3256 perm/sec)   p_kst 1.988372e-03   p_cons 8.947442e-02   p_joint 5.953488e-04

Joint ci ratio: 2.411867e-01	ci left: 5.276820e-04	ci right 6.744786e-04	k: 263	n:440000
Cons ci ratio: 1.885134e-02	ci left: 8.863546e-02	ci right 9.032449e-02	k: 39370	n:440000
KS ci ratio: 1.319357e-01	ci left: 1.870144e-03	ci right 2.136482e-03	k: 880	n:440000
DUSP26   440000 perm   137 sec   (3221 perm/sec)   p_kst 2.000000e-03   p_cons 8.947727e-02   p_joint 5.977273e-04

Joint ci ratio: 2.354572e-01	ci left: 5.431204e-04	ci right 6.900999e-04	k: 276	n:450000
Cons ci ratio: 1.864066e-02	ci left: 8.864535e-02	ci right 9.031549e-02	k: 40265	n:450000
KS ci ratio: 1.301740e-01	ci left: 1.880171e-03	ci right 2.144085e-03	k: 904	n:450000
DUSP26   450000 perm   141 sec   (3186 perm/sec)   p_kst 2.008889e-03   p_cons 8.947778e-02   p_joint 6.133333e-04

Joint ci ratio: 1.755641e-01	ci left: 9.875672e-04	ci right 1.179676e-03	k: 497	n:460000
Cons ci ratio: 1.843688e-02	ci left: 8.865491e-02	ci right 9.030678e-02	k: 41160	n:460000
KS ci ratio: 1.286893e-01	ci left: 1.883472e-03	ci right 2.144603e-03	k: 925	n:460000
DUSP26   460000 perm   146 sec   (3151 perm/sec)   p_kst 2.010870e-03   p_cons 8.947826e-02   p_joint 1.080435e-03

Joint ci ratio: 2.289372e-01	ci left: 5.520719e-04	ci right 6.967525e-04	k: 292	n:470000
Cons ci ratio: 1.824035e-02	ci left: 8.865781e-02	ci right 9.029194e-02	k: 42052	n:470000
KS ci ratio: 1.273217e-01	ci left: 1.884589e-03	ci right 2.142889e-03	k: 945	n:470000
DUSP26   470000 perm   151 sec   (3118 perm/sec)   p_kst 2.010638e-03   p_cons 8.947234e-02   p_joint 6.212766e-04

Joint ci ratio: 1.713160e-01	ci left: 9.962416e-04	ci right 1.184864e-03	k: 522	n:480000
Cons ci ratio: 1.803753e-02	ci left: 8.877271e-02	ci right 9.039058e-02	k: 42998	n:480000
KS ci ratio: 1.257362e-01	ci left: 1.893744e-03	ci right 2.149826e-03	k: 969	n:480000
DUSP26   480000 perm   156 sec   (3085 perm/sec)   p_kst 2.018750e-03   p_cons 8.957917e-02   p_joint 1.087500e-03

Joint ci ratio: 2.255009e-01	ci left: 5.468602e-04	ci right 6.877249e-04	k: 301	n:490000
Cons ci ratio: 1.784690e-02	ci left: 8.883221e-02	ci right 9.043387e-02	k: 43919	n:490000
KS ci ratio: 1.246491e-01	ci left: 1.888704e-03	ci right 2.141732e-03	k: 986	n:490000
DUSP26   490000 perm   160 sec   (3053 perm/sec)   p_kst 2.012245e-03   p_cons 8.963061e-02   p_joint 6.142857e-04

Joint ci ratio: 1.692273e-01	ci left: 9.812833e-04	ci right 1.164577e-03	k: 535	n:500000
Cons ci ratio: 1.766392e-02	ci left: 8.887347e-02	ci right 9.045928e-02	k: 44832	n:500000
KS ci ratio: 1.234665e-01	ci left: 1.887750e-03	ci right 2.138077e-03	k: 1005	n:500000
DUSP26   500000 perm   165 sec   (3022 perm/sec)   p_kst 2.010000e-03   p_cons 8.966400e-02   p_joint 1.070000e-03

Joint ci ratio: 2.207985e-01	ci left: 5.494804e-04	ci right 6.876677e-04	k: 314	n:510000
Cons ci ratio: 1.750370e-02	ci left: 8.875305e-02	ci right 9.032220e-02	k: 45663	n:510000
KS ci ratio: 1.222573e-01	ci left: 1.888746e-03	ci right 2.136574e-03	k: 1025	n:510000
DUSP26   510000 perm   170 sec   (2993 perm/sec)   p_kst 2.009804e-03   p_cons 8.953529e-02   p_joint 6.156863e-04

Joint ci ratio: 1.654131e-01	ci left: 9.896059e-04	ci right 1.169873e-03	k: 560	n:520000
Cons ci ratio: 1.733506e-02	ci left: 8.875609e-02	ci right 9.031003e-02	k: 46556	n:520000
KS ci ratio: 1.210249e-01	ci left: 1.891580e-03	ci right 2.137098e-03	k: 1046	n:520000
DUSP26   520000 perm   175 sec   (2964 perm/sec)   p_kst 2.011538e-03   p_cons 8.953077e-02   p_joint 1.076923e-03

Joint ci ratio: 1.645363e-01	ci left: 9.817871e-04	ci right 1.159588e-03	k: 566	n:530000
Cons ci ratio: 1.717260e-02	ci left: 8.874593e-02	ci right 9.028498e-02	k: 47442	n:530000
KS ci ratio: 1.194932e-01	ci left: 1.905301e-03	ci right 2.149250e-03	k: 1073	n:530000
DUSP26   530000 perm   181 sec   (2934 perm/sec)   p_kst 2.024528e-03   p_cons 8.951321e-02   p_joint 1.067925e-03

Joint ci ratio: 1.632460e-01	ci left: 9.795889e-04	ci right 1.155464e-03	k: 575	n:540000
Cons ci ratio: 1.700535e-02	ci left: 8.882475e-02	ci right 9.035002e-02	k: 48376	n:540000
KS ci ratio: 1.183959e-01	ci left: 1.905953e-03	ci right 2.147588e-03	k: 1093	n:540000
DUSP26   540000 perm   186 sec   (2908 perm/sec)   p_kst 2.024074e-03   p_cons 8.958519e-02   p_joint 1.064815e-03

Joint ci ratio: 1.606172e-01	ci left: 9.949244e-04	ci right 1.170399e-03	k: 594	n:550000
Cons ci ratio: 1.685190e-02	ci left: 8.881384e-02	ci right 9.032503e-02	k: 49262	n:550000
KS ci ratio: 1.172756e-01	ci left: 1.908356e-03	ci right 2.147847e-03	k: 1114	n:550000
DUSP26   550000 perm   196 sec   (2809 perm/sec)   p_kst 2.025455e-03   p_cons 8.956727e-02   p_joint 1.080000e-03

Joint ci ratio: 1.583699e-01	ci left: 1.006304e-03	ci right 1.181066e-03	k: 611	n:560000
Cons ci ratio: 1.670070e-02	ci left: 8.882117e-02	ci right 9.031879e-02	k: 50158	n:560000
KS ci ratio: 1.163920e-01	ci left: 1.903748e-03	ci right 2.140737e-03	k: 1131	n:560000
DUSP26   560000 perm   207 sec   (2702 perm/sec)   p_kst 2.019643e-03   p_cons 8.956786e-02   p_joint 1.091071e-03

Joint ci ratio: 1.567139e-01	ci left: 1.010558e-03	ci right 1.184051e-03	k: 624	n:570000
Cons ci ratio: 1.656526e-02	ci left: 8.871294e-02	ci right 9.019649e-02	k: 50988	n:570000
KS ci ratio: 1.151272e-01	ci left: 1.912939e-03	ci right 2.148309e-03	k: 1156	n:570000
DUSP26   570000 perm   219 sec   (2606 perm/sec)   p_kst 2.028070e-03   p_cons 8.945263e-02   p_joint 1.094737e-03

Joint ci ratio: 1.549872e-01	ci left: 1.016331e-03	ci right 1.188715e-03	k: 638	n:580000
Cons ci ratio: 1.643411e-02	ci left: 8.859819e-02	ci right 9.006798e-02	k: 51812	n:580000
KS ci ratio: 1.140963e-01	ci left: 1.915126e-03	ci right 2.148513e-03	k: 1177	n:580000
DUSP26   580000 perm   231 sec   (2516 perm/sec)   p_kst 2.029310e-03   p_cons 8.933103e-02   p_joint 1.100000e-03

Joint ci ratio: 1.531990e-01	ci left: 1.023549e-03	ci right 1.194970e-03	k: 653	n:590000
Cons ci ratio: 1.629413e-02	ci left: 8.860558e-02	ci right 9.006286e-02	k: 52706	n:590000
KS ci ratio: 1.129983e-01	ci left: 1.920543e-03	ci right 2.152187e-03	k: 1200	n:590000
DUSP26   590000 perm   242 sec   (2436 perm/sec)   p_kst 2.033898e-03   p_cons 8.933220e-02   p_joint 1.106780e-03

Joint ci ratio: 1.520412e-01	ci left: 1.022520e-03	ci right 1.192356e-03	k: 663	n:600000
Cons ci ratio: 1.616396e-02	ci left: 8.854968e-02	ci right 8.999429e-02	k: 53562	n:600000
KS ci ratio: 1.122072e-01	ci left: 1.916069e-03	ci right 2.145449e-03	k: 1217	n:600000
DUSP26   600000 perm   254 sec   (2361 perm/sec)   p_kst 2.028333e-03   p_cons 8.927000e-02   p_joint 1.105000e-03

Joint ci ratio: 1.510214e-01	ci left: 1.019952e-03	ci right 1.188123e-03	k: 672	n:610000
Cons ci ratio: 1.602554e-02	ci left: 8.860999e-02	ci right 9.004309e-02	k: 54488	n:610000
KS ci ratio: 1.117504e-01	ci left: 1.900591e-03	ci right 2.127131e-03	k: 1227	n:610000
DUSP26   610000 perm   266 sec   (2292 perm/sec)   p_kst 2.011475e-03   p_cons 8.932459e-02   p_joint 1.101639e-03

Joint ci ratio: 1.499119e-01	ci left: 1.019023e-03	ci right 1.185695e-03	k: 682	n:620000
Cons ci ratio: 1.588889e-02	ci left: 8.868608e-02	ci right 9.010808e-02	k: 55425	n:620000
KS ci ratio: 1.110298e-01	ci left: 1.895024e-03	ci right 2.119348e-03	k: 1243	n:620000
DUSP26   620000 perm   278 sec   (2229 perm/sec)   p_kst 2.004839e-03   p_cons 8.939516e-02   p_joint 1.100000e-03

Joint ci ratio: 1.493669e-01	ci left: 1.010487e-03	ci right 1.175109e-03	k: 687	n:630000
Cons ci ratio: 1.576228e-02	ci left: 8.869180e-02	ci right 9.010245e-02	k: 56319	n:630000
KS ci ratio: 1.102353e-01	ci left: 1.892725e-03	ci right 2.115069e-03	k: 1261	n:630000
DUSP26   630000 perm   290 sec   (2171 perm/sec)   p_kst 2.001587e-03   p_cons 8.939524e-02   p_joint 1.090476e-03

Joint ci ratio: 1.486132e-01	ci left: 1.005227e-03	ci right 1.168093e-03	k: 694	n:640000
Cons ci ratio: 1.563730e-02	ci left: 8.871140e-02	ci right 9.011107e-02	k: 57222	n:640000
KS ci ratio: 1.096725e-01	ci left: 1.882904e-03	ci right 2.102893e-03	k: 1274	n:640000
DUSP26   640000 perm   303 sec   (2113 perm/sec)   p_kst 1.990625e-03   p_cons 8.940937e-02   p_joint 1.084375e-03

Joint ci ratio: 1.477655e-01	ci left: 1.001614e-03	ci right 1.162886e-03	k: 702	n:650000
Cons ci ratio: 1.552566e-02	ci left: 8.862159e-02	ci right 9.000977e-02	k: 58054	n:650000
KS ci ratio: 1.089488e-01	ci left: 1.879375e-03	ci right 2.097409e-03	k: 1291	n:650000
DUSP26   650000 perm   316 sec   (2060 perm/sec)   p_kst 1.986154e-03   p_cons 8.931385e-02   p_joint 1.080000e-03

Joint ci ratio: 1.467257e-01	ci left: 1.001031e-03	ci right 1.160976e-03	k: 712	n:660000
Cons ci ratio: 1.540976e-02	ci left: 8.860398e-02	ci right 8.998144e-02	k: 58932	n:660000
KS ci ratio: 1.083638e-01	ci left: 1.871535e-03	ci right 2.087419e-03	k: 1305	n:660000
DUSP26   660000 perm   328 sec   (2009 perm/sec)   p_kst 1.977273e-03   p_cons 8.929091e-02   p_joint 1.078788e-03

Joint ci ratio: 1.460111e-01	ci left: 9.961550e-04	ci right 1.154478e-03	k: 719	n:670000
Cons ci ratio: 1.528661e-02	ci left: 8.869106e-02	ci right 9.005876e-02	k: 59880	n:670000
KS ci ratio: 1.076655e-01	ci left: 1.868289e-03	ci right 2.082322e-03	k: 1322	n:670000
DUSP26   670000 perm   342 sec   (1959 perm/sec)   p_kst 1.973134e-03   p_cons 8.937313e-02   p_joint 1.073134e-03

Joint ci ratio: 1.439262e-01	ci left: 1.011268e-03	ci right 1.169502e-03	k: 740	n:680000
Cons ci ratio: 1.516650e-02	ci left: 8.877416e-02	ci right 9.013228e-02	k: 60827	n:680000
KS ci ratio: 1.069007e-01	ci left: 1.868006e-03	ci right 2.080391e-03	k: 1341	n:680000
DUSP26   680000 perm   355 sec   (1915 perm/sec)   p_kst 1.972059e-03   p_cons 8.945147e-02   p_joint 1.088235e-03

Joint ci ratio: 1.896433e-01	ci left: 5.601636e-04	ci right 6.788767e-04	k: 426	n:690000
Cons ci ratio: 1.505024e-02	ci left: 8.884333e-02	ci right 9.019200e-02	k: 61766	n:690000
KS ci ratio: 1.060739e-01	ci left: 1.870557e-03	ci right 2.081485e-03	k: 1362	n:690000
DUSP26   690000 perm   365 sec   (1892 perm/sec)   p_kst 1.973913e-03   p_cons 8.951594e-02   p_joint 6.173913e-04

Joint ci ratio: 1.894223e-01	ci left: 5.535219e-04	ci right 6.706750e-04	k: 427	n:700000
Cons ci ratio: 1.493635e-02	ci left: 8.891341e-02	ci right 9.025285e-02	k: 62707	n:700000
KS ci ratio: 1.057262e-01	ci left: 1.856351e-03	ci right 2.064948e-03	k: 1371	n:700000
DUSP26   700000 perm   371 sec   (1886 perm/sec)   p_kst 1.958571e-03   p_cons 8.958143e-02   p_joint 6.100000e-04

Joint ci ratio: 1.883256e-01	ci left: 5.524351e-04	ci right 6.686037e-04	k: 432	n:710000
Cons ci ratio: 1.483103e-02	ci left: 8.891558e-02	ci right 9.024552e-02	k: 63601	n:710000
KS ci ratio: 1.050017e-01	ci left: 1.856261e-03	ci right 2.063330e-03	k: 1390	n:710000
DUSP26   710000 perm   378 sec   (1876 perm/sec)   p_kst 1.957746e-03   p_cons 8.957887e-02   p_joint 6.084507e-04

Joint ci ratio: 1.872477e-01	ci left: 5.513803e-04	ci right 6.665882e-04	k: 437	n:720000
Cons ci ratio: 1.472702e-02	ci left: 8.892741e-02	ci right 9.024812e-02	k: 64502	n:720000
KS ci ratio: 1.039600e-01	ci left: 1.868352e-03	ci right 2.074576e-03	k: 1418	n:720000
DUSP26   720000 perm   386 sec   (1867 perm/sec)   p_kst 1.969444e-03   p_cons 8.958611e-02   p_joint 6.069444e-04

Joint ci ratio: 1.853527e-01	ci left: 5.555811e-04	ci right 6.703598e-04	k: 446	n:730000
Cons ci ratio: 1.462874e-02	ci left: 8.889935e-02	ci right 9.021076e-02	k: 65374	n:730000
KS ci ratio: 1.033430e-01	ci left: 1.865442e-03	ci right 2.070049e-03	k: 1435	n:730000
DUSP26   730000 perm   392 sec   (1861 perm/sec)   p_kst 1.965753e-03   p_cons 8.955342e-02   p_joint 6.109589e-04

Joint ci ratio: 1.839181e-01	ci left: 5.570955e-04	ci right 6.711970e-04	k: 453	n:740000
Cons ci ratio: 1.452565e-02	ci left: 8.894751e-02	ci right 9.025030e-02	k: 66302	n:740000
KS ci ratio: 1.025602e-01	ci left: 1.869198e-03	ci right 2.072570e-03	k: 1457	n:740000
DUSP26   740000 perm   399 sec   (1854 perm/sec)   p_kst 1.968919e-03   p_cons 8.959730e-02   p_joint 6.121622e-04

Joint ci ratio: 1.831135e-01	ci left: 5.547558e-04	ci right 6.678258e-04	k: 457	n:750000
Cons ci ratio: 1.442660e-02	ci left: 8.897315e-02	ci right 9.026736e-02	k: 67214	n:750000
KS ci ratio: 1.017260e-01	ci left: 1.875458e-03	ci right 2.077753e-03	k: 1481	n:750000
DUSP26   750000 perm   406 sec   (1848 perm/sec)   p_kst 1.974667e-03   p_cons 8.961867e-02   p_joint 6.093333e-04

Joint ci ratio: 1.819258e-01	ci left: 5.549905e-04	ci right 6.672937e-04	k: 463	n:760000
Cons ci ratio: 1.433152e-02	ci left: 8.897584e-02	ci right 9.026150e-02	k: 68109	n:760000
KS ci ratio: 1.011140e-01	ci left: 1.873865e-03	ci right 2.074699e-03	k: 1499	n:760000
DUSP26   760000 perm   413 sec   (1840 perm/sec)   p_kst 1.972368e-03   p_cons 8.961711e-02   p_joint 6.092105e-04

Joint ci ratio: 1.811469e-01	ci left: 5.527415e-04	ci right 6.640582e-04	k: 467	n:770000
Cons ci ratio: 1.423704e-02	ci left: 8.899274e-02	ci right 9.027009e-02	k: 69015	n:770000
KS ci ratio: 1.004134e-01	ci left: 1.876114e-03	ci right 2.075714e-03	k: 1520	n:770000
DUSP26   770000 perm   420 sec   (1833 perm/sec)   p_kst 1.974026e-03   p_cons 8.962987e-02   p_joint 6.064935e-04

Joint ci ratio: 1.796180e-01	ci left: 5.554485e-04	ci right 6.662636e-04	k: 475	n:780000
Cons ci ratio: 1.414507e-02	ci left: 8.900156e-02	ci right 9.027072e-02	k: 69915	n:780000
KS ci ratio: 9.979213e-02	ci left: 1.875811e-03	ci right 2.074071e-03	k: 1539	n:780000
DUSP26   780000 perm   427 sec   (1826 perm/sec)   p_kst 1.973077e-03   p_cons 8.963462e-02   p_joint 6.089744e-04

Joint ci ratio: 1.788682e-01	ci left: 5.532535e-04	ci right 6.631202e-04	k: 479	n:790000
Cons ci ratio: 1.405366e-02	ci left: 8.902407e-02	ci right 9.028527e-02	k: 70826	n:790000
KS ci ratio: 9.905497e-02	ci left: 1.880456e-03	ci right 2.077654e-03	k: 1562	n:790000
DUSP26   790000 perm   434 sec   (1818 perm/sec)   p_kst 1.977215e-03   p_cons 8.965316e-02   p_joint 6.063291e-04

Joint ci ratio: 1.775780e-01	ci left: 5.546976e-04	ci right 6.639711e-04	k: 486	n:800000
Cons ci ratio: 1.396882e-02	ci left: 8.898996e-02	ci right 9.024301e-02	k: 71692	n:800000
KS ci ratio: 9.855206e-02	ci left: 1.876456e-03	ci right 2.072178e-03	k: 1578	n:800000
DUSP26   800000 perm   442 sec   (1812 perm/sec)   p_kst 1.972500e-03   p_cons 8.961500e-02   p_joint 6.075000e-04

Joint ci ratio: 1.766735e-01	ci left: 5.537486e-04	ci right 6.622202e-04	k: 491	n:810000
Cons ci ratio: 1.388087e-02	ci left: 8.901087e-02	ci right 9.025626e-02	k: 72602	n:810000
KS ci ratio: 9.787246e-02	ci left: 1.879784e-03	ci right 2.074423e-03	k: 1600	n:810000
DUSP26   810000 perm   449 sec   (1805 perm/sec)   p_kst 1.975309e-03   p_cons 8.963210e-02   p_joint 6.061728e-04

Joint ci ratio: 1.752542e-01	ci left: 5.563220e-04	ci right 6.643296e-04	k: 499	n:820000
Cons ci ratio: 1.379889e-02	ci left: 8.898023e-02	ci right 9.021779e-02	k: 73470	n:820000
KS ci ratio: 9.714677e-02	ci left: 1.885414e-03	ci right 2.079106e-03	k: 1624	n:820000
DUSP26   820000 perm   456 sec   (1797 perm/sec)   p_kst 1.980488e-03   p_cons 8.959756e-02   p_joint 6.085366e-04

Joint ci ratio: 1.738685e-01	ci left: 5.588369e-04	ci right 6.663848e-04	k: 507	n:830000
Cons ci ratio: 1.371379e-02	ci left: 8.900441e-02	ci right 9.023460e-02	k: 74383	n:830000
KS ci ratio: 9.649564e-02	ci left: 1.888563e-03	ci right 2.081205e-03	k: 1646	n:830000
DUSP26   830000 perm   464 sec   (1789 perm/sec)   p_kst 1.983133e-03   p_cons 8.961807e-02   p_joint 6.108434e-04

Joint ci ratio: 1.726828e-01	ci left: 5.601560e-04	ci right 6.671460e-04	k: 514	n:840000
Cons ci ratio: 1.363065e-02	ci left: 8.902328e-02	ci right 9.024622e-02	k: 75292	n:840000
KS ci ratio: 9.582866e-02	ci left: 1.892803e-03	ci right 2.084467e-03	k: 1669	n:840000
DUSP26   840000 perm   476 sec   (1763 perm/sec)   p_kst 1.986905e-03   p_cons 8.963333e-02   p_joint 6.119048e-04

Joint ci ratio: 1.711931e-01	ci left: 5.636986e-04	ci right 6.703405e-04	k: 523	n:850000
Cons ci ratio: 1.355065e-02	ci left: 8.902179e-02	ci right 9.023748e-02	k: 76184	n:850000
KS ci ratio: 9.523171e-02	ci left: 1.894650e-03	ci right 2.085240e-03	k: 1690	n:850000
DUSP26   850000 perm   488 sec   (1742 perm/sec)   p_kst 1.988235e-03   p_cons 8.962824e-02   p_joint 6.152941e-04

Joint ci ratio: 1.702213e-01	ci left: 5.638227e-04	ci right 6.698204e-04	k: 529	n:860000
Cons ci ratio: 1.346764e-02	ci left: 8.907368e-02	ci right 9.028257e-02	k: 77122	n:860000
KS ci ratio: 9.453518e-02	ci left: 1.900999e-03	ci right 2.090752e-03	k: 1715	n:860000
DUSP26   860000 perm   498 sec   (1728 perm/sec)   p_kst 1.994186e-03   p_cons 8.967674e-02   p_joint 6.151163e-04

Joint ci ratio: 1.692659e-01	ci left: 5.639455e-04	ci right 6.693106e-04	k: 535	n:870000
Cons ci ratio: 1.338726e-02	ci left: 8.911066e-02	ci right 9.031277e-02	k: 78048	n:870000
KS ci ratio: 9.412496e-02	ci left: 1.895983e-03	ci right 2.084369e-03	k: 1730	n:870000
DUSP26   870000 perm   505 sec   (1722 perm/sec)   p_kst 1.988506e-03   p_cons 8.971034e-02   p_joint 6.149425e-04

Joint ci ratio: 1.681713e-01	ci left: 5.651557e-04	ci right 6.699949e-04	k: 542	n:880000
Cons ci ratio: 1.331507e-02	ci left: 8.906410e-02	ci right 9.025906e-02	k: 78901	n:880000
KS ci ratio: 9.361265e-02	ci left: 1.895522e-03	ci right 2.082780e-03	k: 1749	n:880000
DUSP26   880000 perm   513 sec   (1716 perm/sec)   p_kst 1.987500e-03   p_cons 8.966023e-02   p_joint 6.159091e-04

Joint ci ratio: 1.672498e-01	ci left: 5.652643e-04	ci right 6.694911e-04	k: 548	n:890000
Cons ci ratio: 1.324220e-02	ci left: 8.904101e-02	ci right 9.022907e-02	k: 79774	n:890000
KS ci ratio: 9.321427e-02	ci left: 1.890684e-03	ci right 2.076626e-03	k: 1764	n:890000
DUSP26   890000 perm   521 sec   (1709 perm/sec)   p_kst 1.982022e-03   p_cons 8.963371e-02   p_joint 6.157303e-04

Joint ci ratio: 1.669464e-01	ci left: 5.611128e-04	ci right 6.643675e-04	k: 550	n:900000
Cons ci ratio: 1.316882e-02	ci left: 8.903951e-02	ci right 9.022091e-02	k: 80666	n:900000
KS ci ratio: 9.269058e-02	ci left: 1.891382e-03	ci right 2.076291e-03	k: 1784	n:900000
DUSP26   900000 perm   528 sec   (1703 perm/sec)   p_kst 1.982222e-03   p_cons 8.962889e-02   p_joint 6.111111e-04

Joint ci ratio: 1.663439e-01	ci left: 5.591589e-04	ci right 6.616456e-04	k: 554	n:910000
Cons ci ratio: 1.309638e-02	ci left: 8.904134e-02	ci right 9.021622e-02	k: 81561	n:910000
KS ci ratio: 9.222683e-02	ci left: 1.889920e-03	ci right 2.073712e-03	k: 1802	n:910000
DUSP26   910000 perm   536 sec   (1697 perm/sec)   p_kst 1.980220e-03   p_cons 8.962747e-02   p_joint 6.087912e-04

Joint ci ratio: 1.654520e-01	ci left: 5.593321e-04	ci right 6.612461e-04	k: 560	n:920000
Cons ci ratio: 1.302269e-02	ci left: 8.907349e-02	ci right 9.024214e-02	k: 82484	n:920000
KS ci ratio: 9.174474e-02	ci left: 1.889555e-03	ci right 2.072299e-03	k: 1821	n:920000
DUSP26   920000 perm   544 sec   (1691 perm/sec)   p_kst 1.979348e-03   p_cons 8.965652e-02   p_joint 6.086957e-04

Joint ci ratio: 1.645742e-01	ci left: 5.595029e-04	ci right 6.608537e-04	k: 566	n:930000
Cons ci ratio: 1.294691e-02	ci left: 8.914679e-02	ci right 9.030953e-02	k: 83446	n:930000
KS ci ratio: 9.114619e-02	ci left: 1.894454e-03	ci right 2.076413e-03	k: 1845	n:930000
DUSP26   930000 perm   552 sec   (1685 perm/sec)   p_kst 1.983871e-03   p_cons 8.972688e-02   p_joint 6.086022e-04

Joint ci ratio: 1.634252e-01	ci left: 5.617122e-04	ci right 6.626829e-04	k: 574	n:940000
Cons ci ratio: 1.288006e-02	ci left: 8.912201e-02	ci right 9.027839e-02	k: 84317	n:940000
KS ci ratio: 9.055921e-02	ci left: 1.899252e-03	ci right 2.080435e-03	k: 1869	n:940000
DUSP26   940000 perm   560 sec   (1679 perm/sec)   p_kst 1.988298e-03   p_cons 8.969894e-02   p_joint 6.106383e-04

Joint ci ratio: 1.624394e-01	ci left: 5.628674e-04	ci right 6.633759e-04	k: 581	n:950000
Cons ci ratio: 1.281218e-02	ci left: 8.912401e-02	ci right 9.027428e-02	k: 85213	n:950000
KS ci ratio: 9.000723e-02	ci left: 1.902924e-03	ci right 2.083292e-03	k: 1892	n:950000
DUSP26   950000 perm   568 sec   (1674 perm/sec)   p_kst 1.991579e-03   p_cons 8.969789e-02   p_joint 6.115789e-04

Joint ci ratio: 1.613342e-01	ci left: 5.650000e-04	ci right 6.651363e-04	k: 589	n:960000
Cons ci ratio: 1.274698e-02	ci left: 8.910522e-02	ci right 9.024934e-02	k: 86089	n:960000
KS ci ratio: 8.951205e-02	ci left: 1.904486e-03	ci right 2.083957e-03	k: 1913	n:960000
DUSP26   960000 perm   576 sec   (1667 perm/sec)   p_kst 1.992708e-03   p_cons 8.967604e-02   p_joint 6.135417e-04

Joint ci ratio: 1.605200e-01	ci left: 5.651117e-04	ci right 6.647137e-04	k: 595	n:970000
Cons ci ratio: 1.268020e-02	ci left: 8.911972e-02	ci right 9.025799e-02	k: 86997	n:970000
KS ci ratio: 8.907109e-02	ci left: 1.904002e-03	ci right 2.082498e-03	k: 1932	n:970000
DUSP26   970000 perm   584 sec   (1662 perm/sec)   p_kst 1.991753e-03   p_cons 8.968763e-02   p_joint 6.134021e-04

Joint ci ratio: 1.597181e-01	ci left: 5.652224e-04	ci right 6.642984e-04	k: 601	n:980000
Cons ci ratio: 1.261313e-02	ci left: 8.915123e-02	ci right 9.028385e-02	k: 87922	n:980000
KS ci ratio: 8.868211e-02	ci left: 1.901535e-03	ci right 2.078980e-03	k: 1949	n:980000
DUSP26   980000 perm   592 sec   (1655 perm/sec)   p_kst 1.988776e-03   p_cons 8.971633e-02   p_joint 6.132653e-04

Joint ci ratio: 1.591903e-01	ci left: 5.633922e-04	ci right 6.617899e-04	k: 605	n:990000
Cons ci ratio: 1.254633e-02	ci left: 8.919220e-02	ci right 9.031929e-02	k: 88857	n:990000
KS ci ratio: 8.843344e-02	ci left: 1.893192e-03	ci right 2.069338e-03	k: 1960	n:990000
DUSP26   990000 perm   600 sec   (1649 perm/sec)   p_kst 1.979798e-03   p_cons 8.975455e-02   p_joint 6.111111e-04

Joint ci ratio: 1.577645e-01	ci left: 5.683222e-04	ci right 6.666077e-04	k: 616	n:1000000
Cons ci ratio: 1.247966e-02	ci left: 8.924433e-02	ci right 9.036604e-02	k: 89804	n:1000000
KS ci ratio: 8.803042e-02	ci left: 1.891863e-03	ci right 2.067042e-03	k: 1978	n:1000000
DUSP26   1000000 perm   609 sec   (1643 perm/sec)   p_kst 1.978000e-03   p_cons 8.980400e-02   p_joint 6.160000e-04

Joint ci ratio: 1.571292e-01	ci left: 5.674507e-04	ci right 6.651531e-04	k: 621	n:1010000
Cons ci ratio: 1.241939e-02	ci left: 8.922535e-02	ci right 9.034136e-02	k: 90680	n:1010000
KS ci ratio: 8.765487e-02	ci left: 1.889593e-03	ci right 2.063778e-03	k: 1995	n:1010000
DUSP26   1010000 perm   617 sec   (1636 perm/sec)   p_kst 1.975248e-03   p_cons 8.978218e-02   p_joint 6.148515e-04

Joint ci ratio: 1.560044e-01	ci left: 5.703654e-04	ci right 6.678008e-04	k: 630	n:1020000
Cons ci ratio: 1.235783e-02	ci left: 8.923510e-02	ci right 9.034566e-02	k: 91585	n:1020000
KS ci ratio: 8.728407e-02	ci left: 1.887370e-03	ci right 2.060576e-03	k: 2012	n:1020000
DUSP26   1020000 perm   626 sec   (1630 perm/sec)   p_kst 1.972549e-03   p_cons 8.978922e-02   p_joint 6.176471e-04

Joint ci ratio: 1.550246e-01	ci left: 5.722926e-04	ci right 6.693863e-04	k: 638	n:1030000
Cons ci ratio: 1.229323e-02	ci left: 8.929695e-02	ci right 9.040244e-02	k: 92544	n:1030000
KS ci ratio: 8.702540e-02	ci left: 1.880442e-03	ci right 2.052475e-03	k: 2024	n:1030000
DUSP26   1030000 perm   634 sec   (1624 perm/sec)   p_kst 1.965049e-03   p_cons 8.984854e-02   p_joint 6.194175e-04

Joint ci ratio: 1.549038e-01	ci left: 5.677139e-04	ci right 6.639488e-04	k: 639	n:1040000
Cons ci ratio: 1.223704e-02	ci left: 8.925887e-02	ci right 9.035880e-02	k: 93400	n:1040000
KS ci ratio: 8.664125e-02	ci left: 1.879293e-03	ci right 2.050423e-03	k: 2042	n:1040000
DUSP26   1040000 perm   643 sec   (1617 perm/sec)   p_kst 1.963462e-03   p_cons 8.980769e-02   p_joint 6.144231e-04

Joint ci ratio: 1.539445e-01	ci left: 5.696318e-04	ci right 6.655386e-04	k: 647	n:1050000
Cons ci ratio: 1.217729e-02	ci left: 8.927946e-02	ci right 9.037423e-02	k: 94317	n:1050000
KS ci ratio: 8.615749e-02	ci left: 1.882826e-03	ci right 2.053273e-03	k: 2065	n:1050000
DUSP26   1050000 perm   652 sec   (1611 perm/sec)   p_kst 1.966667e-03   p_cons 8.982571e-02   p_joint 6.161905e-04

Joint ci ratio: 1.533541e-01	ci left: 5.687936e-04	ci right 6.641582e-04	k: 652	n:1060000
Cons ci ratio: 1.212281e-02	ci left: 8.924040e-02	ci right 9.032977e-02	k: 95171	n:1060000
KS ci ratio: 8.580530e-02	ci left: 1.880757e-03	ci right 2.050285e-03	k: 2082	n:1060000
DUSP26   1060000 perm   660 sec   (1605 perm/sec)   p_kst 1.964151e-03   p_cons 8.978396e-02   p_joint 6.150943e-04

Joint ci ratio: 1.523079e-01	ci left: 5.715673e-04	ci right 6.666837e-04	k: 661	n:1070000
Cons ci ratio: 1.206754e-02	ci left: 8.922259e-02	ci right 9.030674e-02	k: 96047	n:1070000
KS ci ratio: 8.539629e-02	ci left: 1.881471e-03	ci right 2.050215e-03	k: 2102	n:1070000
DUSP26   1070000 perm   671 sec   (1595 perm/sec)   p_kst 1.964486e-03   p_cons 8.976355e-02   p_joint 6.177570e-04

Joint ci ratio: 1.516224e-01	ci left: 5.716194e-04	ci right 6.662773e-04	k: 667	n:1080000
Cons ci ratio: 1.200947e-02	ci left: 8.925314e-02	ci right 9.033240e-02	k: 96975	n:1080000
KS ci ratio: 8.495300e-02	ci left: 1.883987e-03	ci right 2.052036e-03	k: 2124	n:1080000
DUSP26   1080000 perm   681 sec   (1586 perm/sec)   p_kst 1.966667e-03   p_cons 8.979167e-02   p_joint 6.175926e-04

Joint ci ratio: 1.506110e-01	ci left: 5.743199e-04	ci right 6.687335e-04	k: 676	n:1090000
Cons ci ratio: 1.195398e-02	ci left: 8.925934e-02	ci right 9.033366e-02	k: 97877	n:1090000
KS ci ratio: 8.455601e-02	ci left: 1.884662e-03	ci right 2.051947e-03	k: 2144	n:1090000
DUSP26   1090000 perm   691 sec   (1577 perm/sec)   p_kst 1.966972e-03   p_cons 8.979541e-02   p_joint 6.201835e-04

Joint ci ratio: 1.494018e-01	ci left: 5.787236e-04	ci right 6.730290e-04	k: 687	n:1100000
Cons ci ratio: 1.189734e-02	ci left: 8.929175e-02	ci right 9.036132e-02	k: 98808	n:1100000
KS ci ratio: 8.404792e-02	ci left: 1.890667e-03	ci right 2.057427e-03	k: 2170	n:1100000
DUSP26   1100000 perm   702 sec   (1567 perm/sec)   p_kst 1.972727e-03   p_cons 8.982545e-02   p_joint 6.245455e-04

Joint ci ratio: 1.481153e-01	ci left: 5.839184e-04	ci right 6.781785e-04	k: 699	n:1110000
Cons ci ratio: 1.184240e-02	ci left: 8.931099e-02	ci right 9.037583e-02	k: 99725	n:1110000
KS ci ratio: 8.345378e-02	ci left: 1.900977e-03	ci right 2.067404e-03	k: 2201	n:1110000
DUSP26   1110000 perm   712 sec   (1559 perm/sec)   p_kst 1.982883e-03   p_cons 8.984234e-02   p_joint 6.297297e-04

Joint ci ratio: 1.473802e-01	ci left: 5.847238e-04	ci right 6.786042e-04	k: 706	n:1120000
Cons ci ratio: 1.178648e-02	ci left: 8.935395e-02	ci right 9.041424e-02	k: 100669	n:1120000
KS ci ratio: 8.309608e-02	ci left: 1.900615e-03	ci right 2.066263e-03	k: 2220	n:1120000
DUSP26   1120000 perm   723 sec   (1549 perm/sec)   p_kst 1.982143e-03   p_cons 8.988304e-02   p_joint 6.303571e-04

Joint ci ratio: 1.469652e-01	ci left: 5.829587e-04	ci right 6.762689e-04	k: 710	n:1130000
Cons ci ratio: 1.173497e-02	ci left: 8.934586e-02	ci right 9.040138e-02	k: 101556	n:1130000
KS ci ratio: 8.272445e-02	ci left: 1.901128e-03	ci right 2.066043e-03	k: 2240	n:1130000
DUSP26   1130000 perm   734 sec   (1540 perm/sec)   p_kst 1.982301e-03   p_cons 8.987257e-02   p_joint 6.283186e-04

Joint ci ratio: 1.464512e-01	ci left: 5.820700e-04	ci right 6.748836e-04	k: 715	n:1140000
Cons ci ratio: 1.168487e-02	ci left: 8.932741e-02	ci right 9.037818e-02	k: 102431	n:1140000
KS ci ratio: 8.241255e-02	ci left: 1.899056e-03	ci right 2.063140e-03	k: 2257	n:1140000
DUSP26   1140000 perm   745 sec   (1531 perm/sec)   p_kst 1.979825e-03   p_cons 8.985175e-02   p_joint 6.271930e-04

Joint ci ratio: 1.456397e-01	ci left: 5.837108e-04	ci right 6.762256e-04	k: 723	n:1150000
Cons ci ratio: 1.163201e-02	ci left: 8.935700e-02	ci right 9.040333e-02	k: 103361	n:1150000
KS ci ratio: 8.214035e-02	ci left: 1.895317e-03	ci right 2.058512e-03	k: 2272	n:1150000
DUSP26   1150000 perm   755 sec   (1522 perm/sec)   p_kst 1.975652e-03   p_cons 8.987913e-02   p_joint 6.286957e-04

Joint ci ratio: 1.449407e-01	ci left: 5.844940e-04	ci right 6.766497e-04	k: 730	n:1160000
Cons ci ratio: 1.158432e-02	ci left: 8.932332e-02	ci right 9.036494e-02	k: 104218	n:1160000
KS ci ratio: 8.172778e-02	ci left: 1.898400e-03	ci right 2.061000e-03	k: 2295	n:1160000
DUSP26   1160000 perm   766 sec   (1514 perm/sec)   p_kst 1.978448e-03   p_cons 8.984310e-02   p_joint 6.293103e-04

Joint ci ratio: 1.445459e-01	ci left: 5.827933e-04	ci right 6.744090e-04	k: 734	n:1170000
Cons ci ratio: 1.153395e-02	ci left: 8.933626e-02	ci right 9.037347e-02	k: 105129	n:1170000
KS ci ratio: 8.137413e-02	ci left: 1.898920e-03	ci right 2.060827e-03	k: 2315	n:1170000
DUSP26   1170000 perm   777 sec   (1506 perm/sec)   p_kst 1.978632e-03   p_cons 8.985385e-02   p_joint 6.273504e-04

Joint ci ratio: 1.441543e-01	ci left: 5.811217e-04	ci right 6.722059e-04	k: 738	n:1180000
Cons ci ratio: 1.148506e-02	ci left: 8.933715e-02	ci right 9.036995e-02	k: 106026	n:1180000
KS ci ratio: 8.095560e-02	ci left: 1.902753e-03	ci right 2.064114e-03	k: 2339	n:1180000
DUSP26   1180000 perm   788 sec   (1497 perm/sec)   p_kst 1.982203e-03   p_cons 8.985254e-02   p_joint 6.254237e-04

Joint ci ratio: 1.436692e-01	ci left: 5.802887e-04	ci right 6.709100e-04	k: 743	n:1190000
Cons ci ratio: 1.143585e-02	ci left: 8.935145e-02	ci right 9.037996e-02	k: 106939	n:1190000
KS ci ratio: 8.062895e-02	ci left: 1.902408e-03	ci right 2.063057e-03	k: 2358	n:1190000
DUSP26   1190000 perm   799 sec   (1489 perm/sec)   p_kst 1.981513e-03   p_cons 8.986471e-02   p_joint 6.243697e-04

Joint ci ratio: 1.431889e-01	ci left: 5.794701e-04	ci right 6.696352e-04	k: 748	n:1200000
Cons ci ratio: 1.138820e-02	ci left: 8.935222e-02	ci right 9.037642e-02	k: 107836	n:1200000
KS ci ratio: 8.039095e-02	ci left: 1.897986e-03	ci right 2.057767e-03	k: 2372	n:1200000
DUSP26   1200000 perm   810 sec   (1481 perm/sec)   p_kst 1.976667e-03   p_cons 8.986333e-02   p_joint 6.233333e-04

Joint ci ratio: 1.419618e-01	ci left: 5.850418e-04	ci right 6.752276e-04	k: 761	n:1210000
Cons ci ratio: 1.134137e-02	ci left: 8.934969e-02	ci right 9.036963e-02	k: 108729	n:1210000
KS ci ratio: 8.008784e-02	ci left: 1.896877e-03	ci right 2.055935e-03	k: 2390	n:1210000
DUSP26   1210000 perm   822 sec   (1473 perm/sec)   p_kst 1.975207e-03   p_cons 8.985868e-02   p_joint 6.289256e-04

Joint ci ratio: 1.414062e-01	ci left: 5.849900e-04	ci right 6.747852e-04	k: 767	n:1220000
Cons ci ratio: 1.129398e-02	ci left: 8.936356e-02	ci right 9.037937e-02	k: 109642	n:1220000
KS ci ratio: 7.982134e-02	ci left: 1.894182e-03	ci right 2.052460e-03	k: 2406	n:1220000
DUSP26   1220000 perm   833 sec   (1464 perm/sec)   p_kst 1.972131e-03   p_cons 8.987049e-02   p_joint 6.286885e-04

Joint ci ratio: 1.409482e-01	ci left: 5.841555e-04	ci right 6.735077e-04	k: 772	n:1230000
Cons ci ratio: 1.124706e-02	ci left: 8.937884e-02	ci right 9.039057e-02	k: 110557	n:1230000
KS ci ratio: 7.959040e-02	ci left: 1.889937e-03	ci right 2.047382e-03	k: 2420	n:1230000
DUSP26   1230000 perm   845 sec   (1456 perm/sec)   p_kst 1.967480e-03   p_cons 8.988374e-02   p_joint 6.276423e-04

Joint ci ratio: 1.405851e-01	ci left: 5.825567e-04	ci right 6.714156e-04	k: 776	n:1240000
Cons ci ratio: 1.120122e-02	ci left: 8.938664e-02	ci right 9.039431e-02	k: 111463	n:1240000
KS ci ratio: 7.924740e-02	ci left: 1.891295e-03	ci right 2.048143e-03	k: 2441	n:1240000
DUSP26   1240000 perm   856 sec   (1449 perm/sec)   p_kst 1.968548e-03   p_cons 8.988952e-02   p_joint 6.258065e-04

Joint ci ratio: 2.131910e-01	ci left: 2.415842e-04	ci right 2.999723e-04	k: 337	n:1250000
Cons ci ratio: 1.115791e-02	ci left: 8.936560e-02	ci right 9.036910e-02	k: 112333	n:1250000
KS ci ratio: 7.890879e-02	ci left: 1.892632e-03	ci right 2.048890e-03	k: 2462	n:1250000
DUSP26   1250000 perm   867 sec   (1441 perm/sec)   p_kst 1.969600e-03   p_cons 8.986640e-02   p_joint 2.696000e-04

Joint ci ratio: 1.651713e-01	ci left: 4.099202e-04	ci right 4.844709e-04	k: 562	n:1260000
Cons ci ratio: 1.111379e-02	ci left: 8.936389e-02	ci right 9.036339e-02	k: 113227	n:1260000
KS ci ratio: 7.865385e-02	ci left: 1.890059e-03	ci right 2.045577e-03	k: 2478	n:1260000
DUSP26   1260000 perm   879 sec   (1433 perm/sec)   p_kst 1.966667e-03   p_cons 8.986270e-02   p_joint 4.460317e-04

Joint ci ratio: 1.382039e-01	ci left: 5.893141e-04	ci right 6.775560e-04	k: 803	n:1270000
Cons ci ratio: 1.106935e-02	ci left: 8.937479e-02	ci right 9.037039e-02	k: 114137	n:1270000
KS ci ratio: 7.833847e-02	ci left: 1.890616e-03	ci right 2.045528e-03	k: 2498	n:1270000
DUSP26   1270000 perm   891 sec   (1425 perm/sec)   p_kst 1.966929e-03   p_cons 8.987165e-02   p_joint 6.322835e-04

Joint ci ratio: 1.376911e-01	ci left: 5.892358e-04	ci right 6.771117e-04	k: 809	n:1280000
Cons ci ratio: 1.102680e-02	ci left: 8.936527e-02	ci right 9.035690e-02	k: 115021	n:1280000
KS ci ratio: 7.804237e-02	ci left: 1.890399e-03	ci right 2.044681e-03	k: 2517	n:1280000
DUSP26   1280000 perm   903 sec   (1418 perm/sec)   p_kst 1.966406e-03   p_cons 8.986016e-02   p_joint 6.320312e-04

Joint ci ratio: 1.371840e-01	ci left: 5.891593e-04	ci right 6.766738e-04	k: 815	n:1290000
Cons ci ratio: 1.098463e-02	ci left: 8.935744e-02	ci right 9.034518e-02	k: 115907	n:1290000
KS ci ratio: 7.771892e-02	ci left: 1.891707e-03	ci right 2.045427e-03	k: 2538	n:1290000
DUSP26   1290000 perm   915 sec   (1410 perm/sec)   p_kst 1.967442e-03   p_cons 8.985039e-02   p_joint 6.317829e-04

Joint ci ratio: 1.365993e-01	ci left: 5.898276e-04	ci right 6.770375e-04	k: 822	n:1300000
Cons ci ratio: 1.094361e-02	ci left: 8.933977e-02	ci right 9.032360e-02	k: 116780	n:1300000
KS ci ratio: 7.730873e-02	ci left: 1.897522e-03	ci right 2.050864e-03	k: 2565	n:1300000
DUSP26   1300000 perm   928 sec   (1401 perm/sec)   p_kst 1.973077e-03   p_cons 8.983077e-02   p_joint 6.323077e-04

Joint ci ratio: 1.041533e-01	ci left: 1.023884e-03	ci right 1.137119e-03	k: 1414	n:1310000
Cons ci ratio: 1.090132e-02	ci left: 8.934826e-02	ci right 9.032836e-02	k: 117687	n:1310000
KS ci ratio: 7.708389e-02	ci left: 1.894267e-03	ci right 2.046880e-03	k: 2580	n:1310000
DUSP26   1310000 perm   940 sec   (1394 perm/sec)   p_kst 1.969466e-03   p_cons 8.983740e-02   p_joint 1.079389e-03

Joint ci ratio: 1.036780e-01	ci left: 1.025719e-03	ci right 1.138609e-03	k: 1427	n:1320000
Cons ci ratio: 1.085886e-02	ci left: 8.936646e-02	ci right 9.034292e-02	k: 118607	n:1320000
KS ci ratio: 7.678695e-02	ci left: 1.894776e-03	ci right 2.046816e-03	k: 2600	n:1320000
DUSP26   1320000 perm   952 sec   (1386 perm/sec)   p_kst 1.969697e-03   p_cons 8.985379e-02   p_joint 1.081061e-03

Joint ci ratio: 1.033529e-01	ci left: 1.024599e-03	ci right 1.136990e-03	k: 1436	n:1330000
Cons ci ratio: 1.081615e-02	ci left: 8.939564e-02	ci right 9.036855e-02	k: 119542	n:1330000
KS ci ratio: 7.642041e-02	ci left: 1.898967e-03	ci right 2.050584e-03	k: 2625	n:1330000
DUSP26   1330000 perm   965 sec   (1379 perm/sec)   p_kst 1.973684e-03   p_cons 8.988120e-02   p_joint 1.079699e-03

Joint ci ratio: 1.351299e-01	ci left: 5.851969e-04	ci right 6.707167e-04	k: 840	n:1340000
Cons ci ratio: 1.077708e-02	ci left: 8.937675e-02	ci right 9.034592e-02	k: 120413	n:1340000
KS ci ratio: 7.615989e-02	ci left: 1.897972e-03	ci right 2.048970e-03	k: 2643	n:1340000
DUSP26   1340000 perm   977 sec   (1372 perm/sec)   p_kst 1.972388e-03   p_cons 8.986045e-02   p_joint 6.268657e-04

Joint ci ratio: 1.347301e-01	ci left: 5.844408e-04	ci right 6.695771e-04	k: 845	n:1350000
Cons ci ratio: 1.073888e-02	ci left: 8.935150e-02	ci right 9.031693e-02	k: 121275	n:1350000
KS ci ratio: 7.591630e-02	ci left: 1.896266e-03	ci right 2.046624e-03	k: 2660	n:1350000
DUSP26   1350000 perm   989 sec   (1365 perm/sec)   p_kst 1.970370e-03   p_cons 8.983333e-02   p_joint 6.259259e-04

Joint ci ratio: 1.344128e-01	ci left: 5.829856e-04	ci right 6.676939e-04	k: 849	n:1360000
Cons ci ratio: 1.069948e-02	ci left: 8.935082e-02	ci right 9.031269e-02	k: 122170	n:1360000
KS ci ratio: 7.567503e-02	ci left: 1.894586e-03	ci right 2.044313e-03	k: 2677	n:1360000
DUSP26   1360000 perm   1001 sec   (1358 perm/sec)   p_kst 1.968382e-03   p_cons 8.983088e-02   p_joint 6.242647e-04

Joint ci ratio: 1.342552e-01	ci left: 5.801410e-04	ci right 6.643292e-04	k: 851	n:1370000
Cons ci ratio: 1.066238e-02	ci left: 8.932177e-02	ci right 9.027997e-02	k: 123026	n:1370000
KS ci ratio: 7.553440e-02	ci left: 1.887918e-03	ci right 2.036828e-03	k: 2687	n:1370000
DUSP26   1370000 perm   1014 sec   (1351 perm/sec)   p_kst 1.961314e-03   p_cons 8.980000e-02   p_joint 6.211679e-04

Joint ci ratio: 1.337849e-01	ci left: 5.801391e-04	ci right 6.640087e-04	k: 857	n:1380000
Cons ci ratio: 1.062203e-02	ci left: 8.934880e-02	ci right 9.030364e-02	k: 123959	n:1380000
KS ci ratio: 7.524103e-02	ci left: 1.889168e-03	ci right 2.037573e-03	k: 2708	n:1380000
DUSP26   1380000 perm   1026 sec   (1344 perm/sec)   p_kst 1.962319e-03   p_cons 8.982536e-02   p_joint 6.210145e-04

Joint ci ratio: 1.334743e-01	ci left: 5.787469e-04	ci right 6.622056e-04	k: 861	n:1390000
Cons ci ratio: 1.058278e-02	ci left: 8.936541e-02	ci right 9.031688e-02	k: 124878	n:1390000
KS ci ratio: 7.506132e-02	ci left: 1.884753e-03	ci right 2.032442e-03	k: 2721	n:1390000
DUSP26   1390000 perm   1039 sec   (1338 perm/sec)   p_kst 1.957554e-03   p_cons 8.984029e-02   p_joint 6.194245e-04

Joint ci ratio: 1.330122e-01	ci left: 5.787558e-04	ci right 6.619040e-04	k: 867	n:1400000
Cons ci ratio: 1.054374e-02	ci left: 8.938535e-02	ci right 9.033349e-02	k: 125802	n:1400000
KS ci ratio: 7.481441e-02	ci left: 1.883907e-03	ci right 2.031023e-03	k: 2739	n:1400000
DUSP26   1400000 perm   1052 sec   (1331 perm/sec)   p_kst 1.956429e-03   p_cons 8.985857e-02   p_joint 6.192857e-04

Joint ci ratio: 1.323278e-01	ci left: 5.808224e-04	ci right 6.638043e-04	k: 876	n:1410000
Cons ci ratio: 1.050659e-02	ci left: 8.938237e-02	ci right 9.032712e-02	k: 126694	n:1410000
KS ci ratio: 7.461058e-02	ci left: 1.880985e-03	ci right 2.027456e-03	k: 2754	n:1410000
DUSP26   1410000 perm   1065 sec   (1324 perm/sec)   p_kst 1.953191e-03   p_cons 8.985390e-02   p_joint 6.212766e-04

Joint ci ratio: 1.318774e-01	ci left: 5.808178e-04	ci right 6.634946e-04	k: 882	n:1420000
Cons ci ratio: 1.046775e-02	ci left: 8.941175e-02	ci right 9.035330e-02	k: 127632	n:1420000
KS ci ratio: 7.440841e-02	ci left: 1.878105e-03	ci right 2.023938e-03	k: 2769	n:1420000
DUSP26   1420000 perm   1078 sec   (1318 perm/sec)   p_kst 1.950000e-03   p_cons 8.988169e-02   p_joint 6.211268e-04

Joint ci ratio: 1.314317e-01	ci left: 5.808137e-04	ci right 6.631887e-04	k: 888	n:1430000
Cons ci ratio: 1.042787e-02	ci left: 8.946376e-02	ci right 9.040224e-02	k: 128603	n:1430000
KS ci ratio: 7.415454e-02	ci left: 1.878012e-03	ci right 2.023318e-03	k: 2788	n:1430000
DUSP26   1430000 perm   1091 sec   (1311 perm/sec)   p_kst 1.949650e-03   p_cons 8.993217e-02   p_joint 6.209790e-04

Joint ci ratio: 1.309904e-01	ci left: 5.808102e-04	ci right 6.628865e-04	k: 894	n:1440000
Cons ci ratio: 1.039209e-02	ci left: 8.945754e-02	ci right 9.039272e-02	k: 129491	n:1440000
KS ci ratio: 7.386372e-02	ci left: 1.879965e-03	ci right 2.024828e-03	k: 2810	n:1440000
DUSP26   1440000 perm   1104 sec   (1304 perm/sec)   p_kst 1.951389e-03   p_cons 8.992431e-02   p_joint 6.208333e-04

Joint ci ratio: 1.305535e-01	ci left: 5.808072e-04	ci right 6.625881e-04	k: 900	n:1450000
Cons ci ratio: 1.035721e-02	ci left: 8.944316e-02	ci right 9.037503e-02	k: 130367	n:1450000
KS ci ratio: 7.366755e-02	ci left: 1.877154e-03	ci right 2.021399e-03	k: 2825	n:1450000
DUSP26   1450000 perm   1117 sec   (1298 perm/sec)   p_kst 1.948276e-03   p_cons 8.990828e-02   p_joint 6.206897e-04

Joint ci ratio: 1.298348e-01	ci left: 5.834553e-04	ci right 6.651221e-04	k: 910	n:1460000
Cons ci ratio: 1.032078e-02	ci left: 8.945904e-02	ci right 9.038779e-02	k: 131287	n:1460000
KS ci ratio: 7.325366e-02	ci left: 1.885812e-03	ci right 2.029874e-03	k: 2857	n:1460000
DUSP26   1460000 perm   1130 sec   (1292 perm/sec)   p_kst 1.956849e-03   p_cons 8.992260e-02   p_joint 6.232877e-04

Joint ci ratio: 1.293388e-01	ci left: 5.840938e-04	ci right 6.655136e-04	k: 917	n:1470000
Cons ci ratio: 1.028571e-02	ci left: 8.945911e-02	ci right 9.038468e-02	k: 132184	n:1470000
KS ci ratio: 7.299867e-02	ci left: 1.886340e-03	ci right 2.029919e-03	k: 2877	n:1470000
DUSP26   1470000 perm   1144 sec   (1285 perm/sec)   p_kst 1.957143e-03   p_cons 8.992109e-02   p_joint 6.238095e-04

Joint ci ratio: 1.284324e-01	ci left: 5.886479e-04	ci right 6.700836e-04	k: 930	n:1480000
Cons ci ratio: 1.025044e-02	ci left: 8.946795e-02	ci right 9.039042e-02	k: 133094	n:1480000
KS ci ratio: 7.277150e-02	ci left: 1.885535e-03	ci right 2.028587e-03	k: 2895	n:1480000
DUSP26   1480000 perm   1157 sec   (1279 perm/sec)   p_kst 1.956081e-03   p_cons 8.992838e-02   p_joint 6.283784e-04

Joint ci ratio: 9.743054e-02	ci left: 1.032350e-03	ci right 1.138732e-03	k: 1616	n:1490000
Cons ci ratio: 1.021642e-02	ci left: 8.946261e-02	ci right 9.038194e-02	k: 133983	n:1490000
KS ci ratio: 7.244686e-02	ci left: 1.890013e-03	ci right 2.032739e-03	k: 2921	n:1490000
DUSP26   1490000 perm   1170 sec   (1273 perm/sec)   p_kst 1.960403e-03   p_cons 8.992148e-02   p_joint 1.084564e-03

Outputting figure to mutsig2_images.part000000000053/DUSP26.2_648_1490000_0.0019604_0.089921_0.0010846.png
                gene_name: DUSP26
               theta_stop: 0.097 
                    nperm: 1490000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0010 
    ci_joint_bounds_right: 0.0011 

Current progress: 93 percent done.
DUSP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
DUSP7   10000 perm   2 sec   (5963 perm/sec)   p_kst 1.506000e-01   p_cons 6.120000e-02   p_joint 6.700000e-01

Joint ci ratio: 4.263486e-02	ci left: 2.907219e-01	ci right 3.034372e-01	k: 5941	n:20000
Cons ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
KS ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
DUSP7   20000 perm   4 sec   (5539 perm/sec)   p_kst 1.482000e-01   p_cons 5.035000e-02   p_joint 2.970500e-01

Joint ci ratio: 5.219314e-02	ci left: 1.541201e-01	ci right 1.624129e-01	k: 4747	n:30000
Cons ci ratio: 9.776107e-02	ci left: 4.837465e-02	ci right 5.337945e-02	k: 1525	n:30000
KS ci ratio: 5.432277e-02	ci left: 1.438675e-01	ci right 1.519342e-01	k: 4436	n:30000
DUSP7   30000 perm   6 sec   (5314 perm/sec)   p_kst 1.478667e-01   p_cons 5.083333e-02   p_joint 1.582333e-01

Outputting figure to mutsig2_images.part000000000053/DUSP7.2_1272_30000_0.14787_0.050833_0.15823.png
                gene_name: DUSP7
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 95 percent done.
DUSP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 5.735389e-02	ci left: 3.091742e-01	ci right 3.275318e-01	k: 3183	n:10000
DUSP9   10000 perm   1 sec   (6728 perm/sec)   p_kst 3.183000e-01   p_cons 1.519000e-01   p_joint 1.356000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP9.2_1167_10000_0.3183_0.1519_0.1356.png
                gene_name: DUSP9
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
DUXA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
KS ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
DUXA   10000 perm   1 sec   (7277 perm/sec)   p_kst 7.096000e-01   p_cons 1.193000e-01   p_joint 1

Joint ci ratio: 3.293046e-02	ci left: 4.078100e-01	ci right 4.215148e-01	k: 8293	n:20000
Cons ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
KS ci ratio: 1.782860e-02	ci left: 7.009896e-01	ci right 7.136501e-01	k: 14147	n:20000
DUXA   20000 perm   3 sec   (6335 perm/sec)   p_kst 7.073500e-01   p_cons 1.185000e-01   p_joint 4.146500e-01

Outputting figure to mutsig2_images.part000000000053/DUXA.2_639_20000_0.70735_0.1185_0.41465.png
                gene_name: DUXA
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 98 percent done.
DYNC1LI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061910e-02	ci left: 9.265789e-01	ci right 9.365679e-01	k: 9317	n:10000
Cons ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
KS ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
DYNC1LI1   10000 perm   2 sec   (6047 perm/sec)   p_kst 2.553000e-01   p_cons 1.049000e-01   p_joint 9.317000e-01

Joint ci ratio: 1.705393e-02	ci left: 7.191571e-01	ci right 7.315773e-01	k: 14508	n:20000
Cons ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
KS ci ratio: 4.733429e-02	ci left: 2.492680e-01	ci right 2.614032e-01	k: 5106	n:20000
DYNC1LI1   20000 perm   4 sec   (5535 perm/sec)   p_kst 2.553000e-01   p_cons 1.057500e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1LI1.2_1624_20000_0.2553_0.10575_0.7254.png
                gene_name: DYNC1LI1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000053
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 53 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 4421901: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000054> was used as the working directory.
Started at Wed Oct 24 17:39:56 2012
Results reported at Wed Oct 24 18:32:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000054.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000054.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 54  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000054.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3261.57 sec.
    Max Memory :      5297 MB
    Max Swap   :      7628 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
54
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 54
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 54: processing genes 4796 - 4885
Calculating significance of each gene.
Using projection method.
4796	DYNLL1	1
4797	DYNLL2	1.555112e-01
4798	DYNLRB1	1
4799	DYNLRB2	3.852149e-01
4800	DYNLT1	2.540863e-01
4801	DYNLT3	1
4802	DYRK1A	8.635278e-01
4803	DYRK1B	6.721780e-01
4804	DYRK2	1
4805	DYRK3	5.496720e-01
4806	DYRK4	7.249634e-01
4807	DYSF	1
4808	DYSFIP1	1
4809	DYTN	4.441470e-04
4810	DYX1C1	1
4811	DZIP1	8.605768e-01
4812	DZIP1L	4.148580e-02
4813	DZIP3	6.025133e-02
4814	E2F1	2.589786e-01
4815	E2F2	1
4816	E2F3	8.889055e-01
4817	E2F4	1
4818	E2F5	1
4819	E2F6	4.702674e-01
4820	E2F7	2.294254e-01
4821	E2F8	9.713983e-01
4822	E4F1	6.908650e-01
4823	EAF1	8.009260e-01
4824	EAF2	4.987557e-01
4825	EAPP	7.442113e-01
4826	EARS2	7.375794e-01
4827	EBAG9	5.045346e-01
4828	EBF1	3.578271e-01
4829	EBF2	2.292828e-01
4830	EBF3	7.761327e-01
4831	EBI3	2.532419e-01
4832	EBLN2	1
4833	EBNA1BP2	1
4834	EBP	1.876330e-01
4835	EBPL	1
4836	ECD	9.336526e-01
4837	ECE1	8.906803e-01
4838	ECE2	9.742315e-01
4839	ECEL1	2.842773e-01
4840	ECH1	1
4841	ECHDC1	4.294190e-01
4842	ECHDC2	8.060792e-01
4843	ECHDC3	2.516368e-01
4844	ECHS1	1
4845	ECM1	6.092612e-01
4846	ECM2	1
4847	ECSCR	1
4848	ECSIT	1
4849	ECT2	7.767786e-01
4850	ECT2L	8.760068e-01
4851	EDA	2.708996e-01
4852	EDA2R	2.299589e-01
4853	EDAR	4.202480e-01
4854	EDARADD	4.791389e-01
4855	EDC3	9.717830e-01
4856	EDC4	9.993332e-01
4857	EDDM3A	4.294053e-01
4858	EDDM3B	3.226575e-01
4859	EDEM1	9.415169e-01
4860	EDEM2	6.079628e-01
4861	EDEM3	3.676907e-01
4862	EDF1	3.666052e-01
4863	EDIL3	1.462981e-01
4864	EDN1	4.969015e-01
4865	EDN2	4.064879e-01
4866	EDN3	3.710673e-02
4867	EDNRA	1
4868	EDNRB	3.844974e-02
4869	EEA1	9.113000e-01
4870	EED	4.061267e-01
4871	EEF1A1	7.862417e-01
4872	EEF1A2	2.534164e-02
4873	EEF1B2	4.708905e-02
4874	EEF1D	9.426203e-01
4875	EEF1E1	4.879745e-01
4876	EEF1G	7.318435e-01
4877	EEF2	1
4878	EEF2K	1
4879	EEFSEC	9.052264e-01
4880	EEPD1	4.198383e-01
4881	EFCAB1	5.239062e-01
4882	EFCAB2	1
4883	EFCAB3	7.768658e-01
4884	EFCAB4A	1
4885	EFCAB4B	6.013612e-02
Done

Running MutSig 2:
Scatter job 54: processing genes 4796 - 4885
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DYSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
Cons ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
KS ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
DYSF   10000 perm   3 sec   (3578 perm/sec)   p_kst 2.310000e-02   p_cons 1.823000e-01   p_joint 4.650000e-02

Joint ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
Cons ci ratio: 6.001664e-02	ci left: 1.704976e-01	ci right 1.810969e-01	k: 3515	n:20000
KS ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
DYSF   20000 perm   8 sec   (2446 perm/sec)   p_kst 2.335000e-02   p_cons 1.757500e-01   p_joint 2.815000e-02

Joint ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
Cons ci ratio: 4.889118e-02	ci left: 1.721347e-01	ci right 1.807947e-01	k: 5293	n:30000
KS ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
DYSF   30000 perm   11 sec   (2623 perm/sec)   p_kst 2.526667e-02   p_cons 1.764333e-01   p_joint 2.943333e-02

Joint ci ratio: 1.097172e-01	ci left: 2.922580e-02	ci right 3.264275e-02	k: 1236	n:40000
Cons ci ratio: 4.247146e-02	ci left: 1.718329e-01	ci right 1.793142e-01	k: 7022	n:40000
KS ci ratio: 1.228422e-01	ci left: 2.329805e-02	ci right 2.637146e-02	k: 992	n:40000
DYSF   40000 perm   15 sec   (2706 perm/sec)   p_kst 2.480000e-02   p_cons 1.755500e-01   p_joint 3.090000e-02

Joint ci ratio: 8.911076e-02	ci left: 3.559722e-02	ci right 3.893678e-02	k: 1862	n:50000
Cons ci ratio: 3.857466e-02	ci left: 1.678677e-01	ci right 1.744905e-01	k: 8558	n:50000
KS ci ratio: 1.097038e-01	ci left: 2.353237e-02	ci right 2.628317e-02	k: 1244	n:50000
DYSF   50000 perm   18 sec   (2750 perm/sec)   p_kst 2.488000e-02   p_cons 1.711600e-01   p_joint 3.724000e-02

Joint ci ratio: 1.169948e-01	ci left: 1.729110e-02	ci right 1.945584e-02	k: 1101	n:60000
Cons ci ratio: 3.616036e-02	ci left: 1.608136e-01	ci right 1.667523e-01	k: 9826	n:60000
KS ci ratio: 1.001113e-01	ci left: 2.366789e-02	ci right 2.617835e-02	k: 1494	n:60000
DYSF   60000 perm   22 sec   (2769 perm/sec)   p_kst 2.490000e-02   p_cons 1.637667e-01   p_joint 1.835000e-02

Joint ci ratio: 9.146009e-02	ci left: 2.440065e-02	ci right 2.675319e-02	k: 1789	n:70000
Cons ci ratio: 3.342022e-02	ci left: 1.615051e-01	ci right 1.670085e-01	k: 11497	n:70000
KS ci ratio: 9.301838e-02	ci left: 2.359073e-02	ci right 2.590604e-02	k: 1731	n:70000
DYSF   70000 perm   25 sec   (2772 perm/sec)   p_kst 2.472857e-02   p_cons 1.642429e-01   p_joint 2.555714e-02

Outputting figure to mutsig2_images.part000000000054/DYSF.17_6722_70000_0.024729_0.16424_0.025557.png
                gene_name: DYSF
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 2 percent done.
DZIP3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
DZIP3   10000 perm   2 sec   (4743 perm/sec)   p_kst 8.749000e-01   p_cons 4.953000e-01   p_joint 8.974000e-01

Outputting figure to mutsig2_images.part000000000054/DZIP3.10_3751_10000_0.8749_0.4953_0.8974.png
                gene_name: DZIP3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 4 percent done.
DYTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
DYTN   10000 perm   2 sec   (4826 perm/sec)   p_kst 5.372000e-01   p_cons 1.292000e-01   p_joint 2.798000e-01

Joint ci ratio: 4.583879e-02	ci left: 2.615729e-01	ci right 2.738947e-01	k: 5354	n:20000
Cons ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
KS ci ratio: 2.586070e-02	ci left: 5.276575e-01	ci right 5.415325e-01	k: 10692	n:20000
DYTN   20000 perm   5 sec   (4389 perm/sec)   p_kst 5.346000e-01   p_cons 1.309000e-01   p_joint 2.677000e-01

Outputting figure to mutsig2_images.part000000000054/DYTN.10_1785_20000_0.5346_0.1309_0.2677.png
                gene_name: DYTN
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
DZIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
DZIP1L   10000 perm   2 sec   (4684 perm/sec)   p_kst 7.320000e-01   p_cons 3.960000e-02   p_joint 1.542000e-01

Joint ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
Cons ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
KS ci ratio: 1.557431e-02	ci left: 7.540689e-01	ci right 7.659554e-01	k: 15201	n:20000
DZIP1L   20000 perm   5 sec   (4256 perm/sec)   p_kst 7.600500e-01   p_cons 4.145000e-02   p_joint 1.293000e-01

Joint ci ratio: 4.940187e-02	ci left: 1.691640e-01	ci right 1.777660e-01	k: 5203	n:30000
Cons ci ratio: 1.095946e-01	ci left: 3.865423e-02	ci right 4.316856e-02	k: 1226	n:30000
KS ci ratio: 1.275879e-02	ci left: 7.539509e-01	ci right 7.636656e-01	k: 22765	n:30000
DZIP1L   30000 perm   7 sec   (4102 perm/sec)   p_kst 7.588333e-01   p_cons 4.086667e-02   p_joint 1.734333e-01

Joint ci ratio: 4.918714e-02	ci left: 1.336443e-01	ci right 1.404085e-01	k: 5480	n:40000
Cons ci ratio: 9.446145e-02	ci left: 3.932200e-02	ci right 4.324495e-02	k: 1650	n:40000
KS ci ratio: 1.108969e-02	ci left: 7.532687e-01	ci right 7.616938e-01	k: 30300	n:40000
DZIP1L   40000 perm   10 sec   (4007 perm/sec)   p_kst 7.575000e-01   p_cons 4.125000e-02   p_joint 1.370000e-01

Outputting figure to mutsig2_images.part000000000054/DZIP1L.10_2373_40000_0.7575_0.04125_0.137.png
                gene_name: DZIP1L
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 8 percent done.
E2F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
Cons ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
KS ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
E2F7   10000 perm   2 sec   (4996 perm/sec)   p_kst 3.774000e-01   p_cons 6.927000e-01   p_joint 5.946000e-01

Outputting figure to mutsig2_images.part000000000054/E2F7.10_2784_10000_0.3774_0.6927_0.5946.png
                gene_name: E2F7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 10 percent done.
EDIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
Cons ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
EDIL3   10000 perm   2 sec   (5453 perm/sec)   p_kst 8.185000e-01   p_cons 8.789000e-01   p_joint 9.089000e-01

Outputting figure to mutsig2_images.part000000000054/EDIL3.8_1487_10000_0.8185_0.8789_0.9089.png
                gene_name: EDIL3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 12 percent done.
EBF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
Cons ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
KS ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
EBF3   10000 perm   2 sec   (5686 perm/sec)   p_kst 1.231000e-01   p_cons 3.223000e-01   p_joint 1.433000e-01

Joint ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
Cons ci ratio: 4.021682e-02	ci left: 3.155257e-01	ci right 3.285261e-01	k: 6440	n:20000
KS ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
EBF3   20000 perm   4 sec   (5079 perm/sec)   p_kst 1.213500e-01   p_cons 3.220000e-01   p_joint 1.300000e-01

Outputting figure to mutsig2_images.part000000000054/EBF3.7_1720_20000_0.12135_0.322_0.13.png
                gene_name: EBF3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 14 percent done.
EEF1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
EEF1A2   10000 perm   2 sec   (5778 perm/sec)   p_kst 8.210000e-02   p_cons 1.444000e-01   p_joint 7.780000e-02

Joint ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
Cons ci ratio: 6.824597e-02	ci left: 1.367463e-01	ci right 1.464582e-01	k: 2831	n:20000
KS ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
EEF1A2   20000 perm   4 sec   (5089 perm/sec)   p_kst 8.340000e-02   p_cons 1.415500e-01   p_joint 9.425000e-02

Outputting figure to mutsig2_images.part000000000054/EEF1A2.7_1420_20000_0.0834_0.14155_0.09425.png
                gene_name: EEF1A2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 16 percent done.
DZIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
Cons ci ratio: 1.725614e-02	ci left: 8.303250e-01	ci right 8.448778e-01	k: 8377	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
DZIP1   10000 perm   2 sec   (5086 perm/sec)   p_kst 6.510000e-02   p_cons 8.377000e-01   p_joint 1.099000e-01

Joint ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
Cons ci ratio: 1.160603e-02	ci left: 8.458369e-01	ci right 8.557608e-01	k: 17017	n:20000
KS ci ratio: 1.046962e-01	ci left: 6.206076e-02	ci right 6.896621e-02	k: 1309	n:20000
DZIP1   20000 perm   4 sec   (4556 perm/sec)   p_kst 6.545000e-02   p_cons 8.508500e-01   p_joint 1.155500e-01

Joint ci ratio: 6.366213e-02	ci left: 1.086167e-01	ci right 1.157919e-01	k: 3365	n:30000
Cons ci ratio: 9.989036e-03	ci left: 8.327374e-01	ci right 8.411306e-01	k: 25109	n:30000
KS ci ratio: 8.676748e-02	ci left: 6.092949e-02	ci right 6.648870e-02	k: 1910	n:30000
DZIP1   30000 perm   7 sec   (4376 perm/sec)   p_kst 6.366667e-02   p_cons 8.369667e-01   p_joint 1.121667e-01

Outputting figure to mutsig2_images.part000000000054/DZIP1.6_2684_30000_0.063667_0.83697_0.11217.png
                gene_name: DZIP1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
EBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
EBF1   10000 perm   2 sec   (5312 perm/sec)   p_kst 7.525000e-01   p_cons 1.960000e-02   p_joint 2.322000e-01

Joint ci ratio: 4.352419e-02	ci left: 2.822271e-01	ci right 2.948345e-01	k: 5770	n:20000
Cons ci ratio: 1.874375e-01	ci left: 1.939152e-02	ci right 2.344929e-02	k: 427	n:20000
KS ci ratio: 1.593280e-02	ci left: 7.456008e-01	ci right 7.576260e-01	k: 15033	n:20000
EBF1   20000 perm   4 sec   (4774 perm/sec)   p_kst 7.516500e-01   p_cons 2.135000e-02   p_joint 2.885000e-01

Joint ci ratio: 3.333331e-02	ci left: 3.102428e-01	ci right 3.207930e-01	k: 9465	n:30000
Cons ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
KS ci ratio: 1.297949e-02	ci left: 7.475756e-01	ci right 7.573755e-01	k: 22575	n:30000
EBF1   30000 perm   7 sec   (4574 perm/sec)   p_kst 7.525000e-01   p_cons 2.083333e-02   p_joint 3.155000e-01

Joint ci ratio: 3.207952e-02	ci left: 2.674444e-01	ci right 2.761888e-01	k: 10872	n:40000
Cons ci ratio: 1.317556e-01	ci left: 2.022187e-02	ci right 2.309816e-02	k: 865	n:40000
KS ci ratio: 1.126548e-02	ci left: 7.474104e-01	ci right 7.559030e-01	k: 30067	n:40000
EBF1   40000 perm   9 sec   (4427 perm/sec)   p_kst 7.516750e-01   p_cons 2.162500e-02   p_joint 2.718000e-01

Joint ci ratio: 2.578366e-02	ci left: 3.120453e-01	ci right 3.202161e-01	k: 15806	n:50000
Cons ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
KS ci ratio: 1.006793e-02	ci left: 7.481701e-01	ci right 7.557607e-01	k: 37599	n:50000
EBF1   50000 perm   12 sec   (4329 perm/sec)   p_kst 7.519800e-01   p_cons 2.148000e-02   p_joint 3.161200e-01

Joint ci ratio: 2.559782e-02	ci left: 2.774057e-01	ci right 2.846154e-01	k: 16860	n:60000
Cons ci ratio: 1.082188e-01	ci left: 2.024071e-02	ci right 2.257257e-02	k: 1283	n:60000
KS ci ratio: 9.189407e-03	ci left: 7.485575e-01	ci right 7.554847e-01	k: 45122	n:60000
EBF1   60000 perm   14 sec   (4248 perm/sec)   p_kst 7.520333e-01   p_cons 2.138333e-02   p_joint 2.810000e-01

Joint ci ratio: 2.370834e-02	ci left: 2.775156e-01	ci right 2.841883e-01	k: 19659	n:70000
Cons ci ratio: 9.995287e-02	ci left: 2.042431e-02	ci right 2.258704e-02	k: 1504	n:70000
KS ci ratio: 8.525771e-03	ci left: 7.480229e-01	ci right 7.544419e-01	k: 52587	n:70000
EBF1   70000 perm   17 sec   (4175 perm/sec)   p_kst 7.512429e-01   p_cons 2.148571e-02   p_joint 2.808429e-01

Outputting figure to mutsig2_images.part000000000054/EBF1.6_1840_70000_0.75124_0.021486_0.28084.png
                gene_name: EBF1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.28 

Current progress: 20 percent done.
EBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
EBF2   10000 perm   2 sec   (5772 perm/sec)   p_kst 7.676000e-01   p_cons 9.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EBF2.6_1792_10000_0.7676_0.9204_1.png
                gene_name: EBF2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ECT2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
Cons ci ratio: 3.128802e-02	ci left: 6.011627e-01	ci right 6.203727e-01	k: 6108	n:10000
KS ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
ECT2L   10000 perm   2 sec   (5407 perm/sec)   p_kst 3.204000e-01   p_cons 6.108000e-01   p_joint 5.686000e-01

Outputting figure to mutsig2_images.part000000000054/ECT2L.6_2795_10000_0.3204_0.6108_0.5686.png
                gene_name: ECT2L
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 24 percent done.
EDEM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.254126e-02	ci left: 7.429077e-01	ci right 7.599456e-01	k: 7515	n:10000
Cons ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
EDEM3   10000 perm   2 sec   (4866 perm/sec)   p_kst 5.438000e-01   p_cons 5.797000e-01   p_joint 7.515000e-01

Outputting figure to mutsig2_images.part000000000054/EDEM3.6_2879_10000_0.5438_0.5797_0.7515.png
                gene_name: EDEM3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 25 percent done.
EDNRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
Cons ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
KS ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
EDNRB   10000 perm   2 sec   (5264 perm/sec)   p_kst 6.093000e-01   p_cons 5.623000e-01   p_joint 9.027000e-01

Outputting figure to mutsig2_images.part000000000054/EDNRB.6_1478_10000_0.6093_0.5623_0.9027.png
                gene_name: EDNRB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 27 percent done.
EEA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
Cons ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
KS ci ratio: 2.618745e-02	ci left: 6.822418e-01	ci right 7.004466e-01	k: 6914	n:10000
EEA1   10000 perm   2 sec   (4889 perm/sec)   p_kst 6.914000e-01   p_cons 2.622000e-01   p_joint 7.211000e-01

Outputting figure to mutsig2_images.part000000000054/EEA1.6_4352_10000_0.6914_0.2622_0.7211.png
                gene_name: EEA1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
EEPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
Cons ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KS ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
EEPD1   10000 perm   2 sec   (5443 perm/sec)   p_kst 3.030000e-01   p_cons 3.977000e-01   p_joint 3.603000e-01

Outputting figure to mutsig2_images.part000000000054/EEPD1.6_1738_10000_0.303_0.3977_0.3603.png
                gene_name: EEPD1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 31 percent done.
ECEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
ECEL1   10000 perm   2 sec   (5182 perm/sec)   p_kst 1.652000e-01   p_cons 2.850000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.442662e-01	ci left: 3.302649e-02	ci right 3.820965e-02	k: 711	n:20000
Cons ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
KS ci ratio: 6.328675e-02	ci left: 1.558322e-01	ci right 1.660666e-01	k: 3218	n:20000
ECEL1   20000 perm   4 sec   (4692 perm/sec)   p_kst 1.609000e-01   p_cons 2.595000e-02   p_joint 3.555000e-02

Joint ci ratio: 1.400009e-01	ci left: 2.368120e-02	ci right 2.727816e-02	k: 763	n:30000
Cons ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
KS ci ratio: 5.145476e-02	ci left: 1.579128e-01	ci right 1.662860e-01	k: 4862	n:30000
ECEL1   30000 perm   7 sec   (4482 perm/sec)   p_kst 1.620667e-01   p_cons 2.926667e-02   p_joint 2.543333e-02

Joint ci ratio: 1.001322e-01	ci left: 3.504936e-02	ci right 3.876826e-02	k: 1475	n:40000
Cons ci ratio: 1.116891e-01	ci left: 2.820403e-02	ci right 3.156468e-02	k: 1194	n:40000
KS ci ratio: 4.409542e-02	ci left: 1.613249e-01	ci right 1.686239e-01	k: 6598	n:40000
ECEL1   40000 perm   9 sec   (4357 perm/sec)   p_kst 1.649500e-01   p_cons 2.985000e-02   p_joint 3.687500e-02

Joint ci ratio: 9.620117e-02	ci left: 3.059174e-02	ci right 3.370289e-02	k: 1606	n:50000
Cons ci ratio: 1.000968e-01	ci left: 2.826841e-02	ci right 3.126652e-02	k: 1487	n:50000
KS ci ratio: 3.956881e-02	ci left: 1.608235e-01	ci right 1.673355e-01	k: 8203	n:50000
ECEL1   50000 perm   12 sec   (4260 perm/sec)   p_kst 1.640600e-01   p_cons 2.974000e-02   p_joint 3.212000e-02

Joint ci ratio: 9.820780e-02	ci left: 2.459490e-02	ci right 2.715124e-02	k: 1551	n:60000
Cons ci ratio: 9.115483e-02	ci left: 2.853539e-02	ci right 3.127699e-02	k: 1793	n:60000
KS ci ratio: 3.623756e-02	ci left: 1.602345e-01	ci right 1.661648e-01	k: 9791	n:60000
ECEL1   60000 perm   14 sec   (4175 perm/sec)   p_kst 1.631833e-01   p_cons 2.988333e-02   p_joint 2.585000e-02

Outputting figure to mutsig2_images.part000000000054/ECEL1.5_2396_60000_0.16318_0.029883_0.02585.png
                gene_name: ECEL1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 33 percent done.
EDEM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.294683e-02	ci left: 8.956973e-01	ci right 9.074676e-01	k: 9017	n:10000
KS ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
EDEM2   10000 perm   2 sec   (5488 perm/sec)   p_kst 5.851000e-01   p_cons 9.017000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDEM2.5_1781_10000_0.5851_0.9017_1.png
                gene_name: EDEM2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
EDN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
Cons ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
EDN3   10000 perm   2 sec   (6296 perm/sec)   p_kst 7.075000e-01   p_cons 9.244000e-01   p_joint 8.514000e-01

Outputting figure to mutsig2_images.part000000000054/EDN3.5_776_10000_0.7075_0.9244_0.8514.png
                gene_name: EDN3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 37 percent done.
EFCAB4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
EFCAB4B   10000 perm   2 sec   (5233 perm/sec)   p_kst 1.479000e-01   p_cons 5.621000e-01   p_joint 1.990000e-01

Outputting figure to mutsig2_images.part000000000054/EFCAB4B.5_2456_10000_0.1479_0.5621_0.199.png
                gene_name: EFCAB4B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
ECE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813322e-02	ci left: 6.506199e-01	ci right 6.692868e-01	k: 6600	n:10000
Cons ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
KS ci ratio: 1.440314e-02	ci left: 8.745949e-01	ci right 8.873822e-01	k: 8811	n:10000
ECE1   10000 perm   2 sec   (5372 perm/sec)   p_kst 8.811000e-01   p_cons 2.617000e-01   p_joint 6.600000e-01

Outputting figure to mutsig2_images.part000000000054/ECE1.4_2540_10000_0.8811_0.2617_0.66.png
                gene_name: ECE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 41 percent done.
ECM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
KS ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
ECM1   10000 perm   2 sec   (5535 perm/sec)   p_kst 2.913000e-01   p_cons 1.600000e-03   p_joint 1.170000e-02

Joint ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
Cons ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
KS ci ratio: 4.278334e-02	ci left: 2.892810e-01	ci right 3.019784e-01	k: 5912	n:20000
ECM1   20000 perm   4 sec   (5003 perm/sec)   p_kst 2.956000e-01   p_cons 1.600000e-03   p_joint 1.950000e-02

Joint ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
Cons ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
KS ci ratio: 3.502638e-02	ci left: 2.893455e-01	ci right 2.996944e-01	k: 8835	n:30000
ECM1   30000 perm   6 sec   (4790 perm/sec)   p_kst 2.945000e-01   p_cons 1.466667e-03   p_joint 2.003333e-02

Joint ci ratio: 1.479373e-01	ci left: 1.597260e-02	ci right 1.854817e-02	k: 689	n:40000
Cons ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
KS ci ratio: 2.984526e-02	ci left: 2.968057e-01	ci right 3.058232e-01	k: 12052	n:40000
ECM1   40000 perm   9 sec   (4655 perm/sec)   p_kst 3.013000e-01   p_cons 1.475000e-03   p_joint 1.722500e-02

Joint ci ratio: 1.248984e-01	ci left: 1.811207e-02	ci right 2.054419e-02	k: 965	n:50000
Cons ci ratio: 4.616391e-01	ci left: 1.109193e-03	ci right 1.790804e-03	k: 71	n:50000
KS ci ratio: 2.668967e-02	ci left: 2.973596e-01	ci right 3.054234e-01	k: 15069	n:50000
ECM1   50000 perm   11 sec   (4542 perm/sec)   p_kst 3.013800e-01   p_cons 1.420000e-03   p_joint 1.930000e-02

Joint ci ratio: 1.586964e-01	ci left: 9.267325e-03	ci right 1.088059e-02	k: 603	n:60000
Cons ci ratio: 4.223979e-01	ci left: 1.131735e-03	ci right 1.751437e-03	k: 85	n:60000
KS ci ratio: 2.434784e-02	ci left: 2.979954e-01	ci right 3.053571e-01	k: 18100	n:60000
ECM1   60000 perm   14 sec   (4441 perm/sec)   p_kst 3.016667e-01   p_cons 1.416667e-03   p_joint 1.005000e-02

Joint ci ratio: 1.409503e-01	ci left: 1.015778e-02	ci right 1.171173e-02	k: 764	n:70000
Cons ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
KS ci ratio: 2.252327e-02	ci left: 2.986142e-01	ci right 3.054308e-01	k: 21141	n:70000
ECM1   70000 perm   16 sec   (4352 perm/sec)   p_kst 3.020143e-01   p_cons 1.414286e-03   p_joint 1.091429e-02

Joint ci ratio: 1.474054e-01	ci left: 8.116259e-03	ci right 9.419740e-03	k: 700	n:80000
Cons ci ratio: 3.734980e-01	ci left: 1.118884e-03	ci right 1.643349e-03	k: 109	n:80000
KS ci ratio: 2.109191e-02	ci left: 2.983708e-01	ci right 3.047436e-01	k: 24124	n:80000
ECM1   80000 perm   19 sec   (4266 perm/sec)   p_kst 3.015500e-01   p_cons 1.362500e-03   p_joint 8.750000e-03

Joint ci ratio: 1.411235e-01	ci left: 7.899839e-03	ci right 9.109938e-03	k: 764	n:90000
Cons ci ratio: 3.517819e-01	ci left: 1.135958e-03	ci right 1.630412e-03	k: 123	n:90000
KS ci ratio: 1.988125e-02	ci left: 2.986468e-01	ci right 3.046549e-01	k: 27148	n:90000
ECM1   90000 perm   21 sec   (4189 perm/sec)   p_kst 3.016444e-01   p_cons 1.366667e-03   p_joint 8.488889e-03

Joint ci ratio: 1.544542e-01	ci left: 5.905497e-03	ci right 6.903457e-03	k: 639	n:100000
Cons ci ratio: 3.346770e-01	ci left: 1.141164e-03	ci right 1.608528e-03	k: 136	n:100000
KS ci ratio: 1.886529e-02	ci left: 2.987064e-01	ci right 3.044052e-01	k: 30155	n:100000
ECM1   100000 perm   24 sec   (4123 perm/sec)   p_kst 3.015500e-01   p_cons 1.360000e-03   p_joint 6.390000e-03

Joint ci ratio: 1.900039e-01	ci left: 3.488289e-03	ci right 4.229157e-03	k: 423	n:110000
Cons ci ratio: 4.153492e-01	ci left: 6.416713e-04	ci right 9.855309e-04	k: 88	n:110000
KS ci ratio: 1.796122e-02	ci left: 2.994507e-01	ci right 3.048870e-01	k: 33238	n:110000
ECM1   110000 perm   27 sec   (4058 perm/sec)   p_kst 3.021636e-01   p_cons 8.000000e-04   p_joint 3.845455e-03

Joint ci ratio: 1.946979e-01	ci left: 3.038887e-03	ci right 3.702139e-03	k: 403	n:120000
Cons ci ratio: 3.978531e-01	ci left: 6.480491e-04	ci right 9.768505e-04	k: 96	n:120000
KS ci ratio: 1.718187e-02	ci left: 2.999267e-01	ci right 3.051329e-01	k: 36303	n:120000
ECM1   120000 perm   30 sec   (3995 perm/sec)   p_kst 3.025250e-01   p_cons 8.000000e-04   p_joint 3.358333e-03

Joint ci ratio: 1.312449e-01	ci left: 6.367890e-03	ci right 7.269705e-03	k: 885	n:130000
Cons ci ratio: 3.735977e-01	ci left: 6.885132e-04	ci right 1.011347e-03	k: 109	n:130000
KS ci ratio: 1.646438e-02	ci left: 3.011394e-01	ci right 3.061463e-01	k: 39473	n:130000
ECM1   130000 perm   33 sec   (3935 perm/sec)   p_kst 3.036385e-01   p_cons 8.384615e-04   p_joint 6.807692e-03

Joint ci ratio: 1.519940e-01	ci left: 4.369065e-03	ci right 5.094539e-03	k: 661	n:140000
Cons ci ratio: 3.622514e-01	ci left: 6.847114e-04	ci right 9.937104e-04	k: 116	n:140000
KS ci ratio: 1.586291e-02	ci left: 3.012988e-01	ci right 3.061236e-01	k: 42519	n:140000
ECM1   140000 perm   36 sec   (3879 perm/sec)   p_kst 3.037071e-01   p_cons 8.285714e-04   p_joint 4.721429e-03

Joint ci ratio: 1.083749e-01	ci left: 8.177829e-03	ci right 9.121312e-03	k: 1296	n:150000
Cons ci ratio: 3.533084e-01	ci left: 6.754685e-04	ci right 9.710445e-04	k: 122	n:150000
KS ci ratio: 1.531420e-02	ci left: 3.016793e-01	ci right 3.063416e-01	k: 45601	n:150000
ECM1   150000 perm   39 sec   (3821 perm/sec)   p_kst 3.040067e-01   p_cons 8.133333e-04   p_joint 8.640000e-03

Joint ci ratio: 7.784814e-02	ci left: 1.499233e-02	ci right 1.621282e-02	k: 2495	n:160000
Cons ci ratio: 3.359933e-01	ci left: 7.074754e-04	ci right 9.986029e-04	k: 135	n:160000
KS ci ratio: 1.483517e-02	ci left: 3.015470e-01	ci right 3.060601e-01	k: 48608	n:160000
ECM1   160000 perm   42 sec   (3767 perm/sec)   p_kst 3.038000e-01   p_cons 8.437500e-04   p_joint 1.559375e-02

Joint ci ratio: 7.637670e-02	ci left: 1.467569e-02	ci right 1.584681e-02	k: 2593	n:170000
Cons ci ratio: 3.299857e-01	ci left: 6.928113e-04	ci right 9.717249e-04	k: 140	n:170000
KS ci ratio: 1.438344e-02	ci left: 3.018725e-01	ci right 3.062518e-01	k: 51690	n:170000
ECM1   170000 perm   46 sec   (3714 perm/sec)   p_kst 3.040588e-01   p_cons 8.235294e-04   p_joint 1.525294e-02

Joint ci ratio: 7.581863e-02	ci left: 1.407820e-02	ci right 1.519307e-02	k: 2633	n:180000
Cons ci ratio: 3.276757e-01	ci left: 6.645140e-04	ci right 9.297682e-04	k: 142	n:180000
KS ci ratio: 1.397171e-02	ci left: 3.021305e-01	ci right 3.063869e-01	k: 54766	n:180000
ECM1   180000 perm   49 sec   (3666 perm/sec)   p_kst 3.042556e-01   p_cons 7.888889e-04   p_joint 1.462778e-02

Joint ci ratio: 7.309699e-02	ci left: 1.436519e-02	ci right 1.546021e-02	k: 2832	n:190000
Cons ci ratio: 3.188775e-01	ci left: 6.682291e-04	ci right 9.263427e-04	k: 150	n:190000
KS ci ratio: 1.360154e-02	ci left: 3.021107e-01	ci right 3.062532e-01	k: 57794	n:190000
ECM1   190000 perm   53 sec   (3618 perm/sec)   p_kst 3.041789e-01   p_cons 7.894737e-04   p_joint 1.490526e-02

Joint ci ratio: 7.382834e-02	ci left: 1.338655e-02	ci right 1.441761e-02	k: 2779	n:200000
Cons ci ratio: 3.097785e-01	ci left: 6.762692e-04	ci right 9.285627e-04	k: 159	n:200000
KS ci ratio: 1.325711e-02	ci left: 3.021641e-01	ci right 3.062016e-01	k: 60836	n:200000
ECM1   200000 perm   56 sec   (3572 perm/sec)   p_kst 3.041800e-01   p_cons 7.950000e-04   p_joint 1.389500e-02

Joint ci ratio: 7.786873e-02	ci left: 1.145927e-02	ci right 1.239237e-02	k: 2503	n:210000
Cons ci ratio: 3.078647e-01	ci left: 6.528504e-04	ci right 8.946071e-04	k: 161	n:210000
KS ci ratio: 1.292872e-02	ci left: 3.025036e-01	ci right 3.064447e-01	k: 63939	n:210000
ECM1   210000 perm   60 sec   (3526 perm/sec)   p_kst 3.044714e-01   p_cons 7.666667e-04   p_joint 1.191905e-02

Joint ci ratio: 7.428264e-02	ci left: 1.203544e-02	ci right 1.296838e-02	k: 2749	n:220000
Cons ci ratio: 2.979142e-01	ci left: 6.693778e-04	ci right 9.077292e-04	k: 172	n:220000
KS ci ratio: 1.262697e-02	ci left: 3.026998e-01	ci right 3.065508e-01	k: 67017	n:220000
ECM1   220000 perm   63 sec   (3480 perm/sec)   p_kst 3.046227e-01   p_cons 7.818182e-04   p_joint 1.249545e-02

Joint ci ratio: 7.304972e-02	ci left: 1.191330e-02	ci right 1.282079e-02	k: 2843	n:230000
Cons ci ratio: 2.937021e-01	ci left: 6.604001e-04	ci right 8.916111e-04	k: 177	n:230000
KS ci ratio: 1.235249e-02	ci left: 3.026369e-01	ci right 3.064028e-01	k: 70039	n:230000
ECM1   230000 perm   67 sec   (3435 perm/sec)   p_kst 3.045174e-01   p_cons 7.695652e-04   p_joint 1.236087e-02

Joint ci ratio: 7.394195e-02	ci left: 1.114680e-02	ci right 1.200672e-02	k: 2777	n:240000
Cons ci ratio: 2.880924e-01	ci left: 6.599222e-04	ci right 8.857495e-04	k: 184	n:240000
KS ci ratio: 1.209589e-02	ci left: 3.025552e-01	ci right 3.062412e-01	k: 73055	n:240000
ECM1   240000 perm   71 sec   (3392 perm/sec)   p_kst 3.043958e-01   p_cons 7.666667e-04   p_joint 1.157083e-02

Joint ci ratio: 7.378489e-02	ci left: 1.075189e-02	ci right 1.157950e-02	k: 2790	n:250000
Cons ci ratio: 2.813298e-01	ci left: 6.669556e-04	ci right 8.888824e-04	k: 193	n:250000
KS ci ratio: 1.185296e-02	ci left: 3.025406e-01	ci right 3.061519e-01	k: 76086	n:250000
ECM1   250000 perm   75 sec   (3351 perm/sec)   p_kst 3.043440e-01   p_cons 7.720000e-04   p_joint 1.116000e-02

Joint ci ratio: 7.369422e-02	ci left: 1.036848e-02	ci right 1.116556e-02	k: 2798	n:260000
Cons ci ratio: 2.777745e-01	ci left: 6.591859e-04	ci right 8.752707e-04	k: 198	n:260000
KS ci ratio: 1.162368e-02	ci left: 3.025432e-01	ci right 3.060842e-01	k: 79121	n:260000
ECM1   260000 perm   79 sec   (3310 perm/sec)   p_kst 3.043115e-01   p_cons 7.615385e-04   p_joint 1.076154e-02

Joint ci ratio: 6.749978e-02	ci left: 1.192042e-02	ci right 1.275677e-02	k: 3330	n:270000
Cons ci ratio: 2.697580e-01	ci left: 6.761668e-04	ci right 8.903392e-04	k: 210	n:270000
KS ci ratio: 1.140471e-02	ci left: 3.026387e-01	ci right 3.061137e-01	k: 82181	n:270000
ECM1   270000 perm   83 sec   (3271 perm/sec)   p_kst 3.043741e-01   p_cons 7.777778e-04   p_joint 1.233333e-02

Joint ci ratio: 7.054550e-02	ci left: 1.052220e-02	ci right 1.129512e-02	k: 3053	n:280000
Cons ci ratio: 2.653921e-01	ci left: 6.753411e-04	ci right 8.852145e-04	k: 217	n:280000
KS ci ratio: 1.119616e-02	ci left: 3.027850e-01	ci right 3.061976e-01	k: 85257	n:280000
ECM1   280000 perm   87 sec   (3233 perm/sec)   p_kst 3.044893e-01   p_cons 7.750000e-04   p_joint 1.090357e-02

Joint ci ratio: 6.947494e-02	ci left: 1.048121e-02	ci right 1.123896e-02	k: 3148	n:290000
Cons ci ratio: 2.612315e-01	ci left: 6.745983e-04	ci right 8.804174e-04	k: 224	n:290000
KS ci ratio: 1.099552e-02	ci left: 3.030422e-01	ci right 3.063962e-01	k: 88368	n:290000
ECM1   290000 perm   91 sec   (3194 perm/sec)   p_kst 3.047172e-01   p_cons 7.724138e-04   p_joint 1.085517e-02

Joint ci ratio: 7.100728e-02	ci left: 9.699422e-03	ci right 1.041676e-02	k: 3016	n:300000
Cons ci ratio: 2.583776e-01	ci left: 6.676927e-04	ci right 8.688203e-04	k: 229	n:300000
KS ci ratio: 1.081319e-02	ci left: 3.029733e-01	ci right 3.062705e-01	k: 91386	n:300000
ECM1   300000 perm   95 sec   (3156 perm/sec)   p_kst 3.046200e-01   p_cons 7.633333e-04   p_joint 1.005333e-02

Joint ci ratio: 6.976864e-02	ci left: 9.728797e-03	ci right 1.043525e-02	k: 3124	n:310000
Cons ci ratio: 2.556153e-01	ci left: 6.612441e-04	ci right 8.579600e-04	k: 234	n:310000
KS ci ratio: 1.064548e-02	ci left: 3.026773e-01	ci right 3.059199e-01	k: 94332	n:310000
ECM1   310000 perm   99 sec   (3120 perm/sec)   p_kst 3.042968e-01   p_cons 7.548387e-04   p_joint 1.007742e-02

Joint ci ratio: 6.929986e-02	ci left: 9.556781e-03	ci right 1.024589e-02	k: 3167	n:320000
Cons ci ratio: 2.513722e-01	ci left: 6.639922e-04	ci right 8.577335e-04	k: 242	n:320000
KS ci ratio: 1.048448e-02	ci left: 3.024346e-01	ci right 3.056252e-01	k: 97289	n:320000
ECM1   320000 perm   104 sec   (3084 perm/sec)   p_kst 3.040281e-01   p_cons 7.562500e-04   p_joint 9.896875e-03

Joint ci ratio: 6.909049e-02	ci left: 9.326701e-03	ci right 9.997103e-03	k: 3187	n:330000
Cons ci ratio: 2.478283e-01	ci left: 6.637566e-04	ci right 8.542779e-04	k: 249	n:330000
KS ci ratio: 1.032509e-02	ci left: 3.024308e-01	ci right 3.055726e-01	k: 100320	n:330000
ECM1   330000 perm   108 sec   (3052 perm/sec)   p_kst 3.040000e-01   p_cons 7.545455e-04   p_joint 9.657576e-03

Joint ci ratio: 6.889347e-02	ci left: 9.107269e-03	ci right 9.759956e-03	k: 3206	n:340000
Cons ci ratio: 2.463562e-01	ci left: 6.525110e-04	ci right 8.385216e-04	k: 252	n:340000
KS ci ratio: 1.017297e-02	ci left: 3.024188e-01	ci right 3.055139e-01	k: 103348	n:340000
ECM1   340000 perm   112 sec   (3023 perm/sec)   p_kst 3.039647e-01   p_cons 7.411765e-04   p_joint 9.429412e-03

Joint ci ratio: 6.635043e-02	ci left: 9.546534e-03	ci right 1.020448e-02	k: 3455	n:350000
Cons ci ratio: 2.420874e-01	ci left: 6.580089e-04	ci right 8.418483e-04	k: 261	n:350000
KS ci ratio: 1.002237e-02	ci left: 3.026190e-01	ci right 3.056700e-01	k: 106450	n:350000
ECM1   350000 perm   117 sec   (2990 perm/sec)   p_kst 3.041429e-01   p_cons 7.457143e-04   p_joint 9.871429e-03

Joint ci ratio: 6.840770e-02	ci left: 8.729566e-03	ci right 9.350597e-03	k: 3253	n:360000
Cons ci ratio: 2.389170e-01	ci left: 6.580037e-04	ci right 8.390776e-04	k: 268	n:360000
KS ci ratio: 9.880465e-03	ci left: 3.027140e-01	ci right 3.057225e-01	k: 109518	n:360000
ECM1   360000 perm   122 sec   (2957 perm/sec)   p_kst 3.042167e-01   p_cons 7.444444e-04   p_joint 9.036111e-03

Joint ci ratio: 6.921458e-02	ci left: 8.297010e-03	ci right 8.894508e-03	k: 3179	n:370000
Cons ci ratio: 2.358679e-01	ci left: 6.580135e-04	ci right 8.364419e-04	k: 275	n:370000
KS ci ratio: 9.742373e-03	ci left: 3.028932e-01	ci right 3.058612e-01	k: 112619	n:370000
ECM1   370000 perm   127 sec   (2924 perm/sec)   p_kst 3.043757e-01   p_cons 7.432432e-04   p_joint 8.591892e-03

Joint ci ratio: 6.645422e-02	ci left: 8.772041e-03	ci right 9.377586e-03	k: 3447	n:380000
Cons ci ratio: 2.313026e-01	ci left: 6.679513e-04	ci right 8.450679e-04	k: 286	n:380000
KS ci ratio: 9.617799e-03	ci left: 3.027164e-01	ci right 3.056445e-01	k: 115588	n:380000
ECM1   380000 perm   131 sec   (2891 perm/sec)   p_kst 3.041789e-01   p_cons 7.526316e-04   p_joint 9.071053e-03

Joint ci ratio: 7.140121e-02	ci left: 7.395301e-03	ci right 7.945385e-03	k: 2990	n:390000
Cons ci ratio: 2.285326e-01	ci left: 6.677393e-04	ci right 8.423803e-04	k: 293	n:390000
KS ci ratio: 9.493568e-03	ci left: 3.027409e-01	ci right 3.056312e-01	k: 118632	n:390000
ECM1   390000 perm   136 sec   (2861 perm/sec)   p_kst 3.041846e-01   p_cons 7.512821e-04   p_joint 7.666667e-03

Joint ci ratio: 7.357025e-02	ci left: 6.788133e-03	ci right 7.309047e-03	k: 2818	n:400000
Cons ci ratio: 2.243727e-01	ci left: 6.769864e-04	ci right 8.503775e-04	k: 304	n:400000
KS ci ratio: 9.380898e-03	ci left: 3.024549e-01	ci right 3.053080e-01	k: 121552	n:400000
ECM1   400000 perm   141 sec   (2830 perm/sec)   p_kst 3.038800e-01   p_cons 7.600000e-04   p_joint 7.045000e-03

Joint ci ratio: 7.300510e-02	ci left: 6.727911e-03	ci right 7.240069e-03	k: 2862	n:410000
Cons ci ratio: 2.232785e-01	ci left: 6.673810e-04	ci right 8.373638e-04	k: 307	n:410000
KS ci ratio: 9.266530e-03	ci left: 3.024387e-01	ci right 3.052567e-01	k: 124577	n:410000
ECM1   410000 perm   146 sec   (2799 perm/sec)   p_kst 3.038463e-01   p_cons 7.487805e-04   p_joint 6.980488e-03

Joint ci ratio: 7.215343e-02	ci left: 6.726689e-03	ci right 7.232530e-03	k: 2930	n:420000
Cons ci ratio: 2.207839e-01	ci left: 6.672308e-04	ci right 8.350186e-04	k: 314	n:420000
KS ci ratio: 9.157997e-03	ci left: 3.023427e-01	ci right 3.051267e-01	k: 127568	n:420000
ECM1   420000 perm   152 sec   (2771 perm/sec)   p_kst 3.037333e-01   p_cons 7.476190e-04   p_joint 6.976190e-03

Joint ci ratio: 7.145093e-02	ci left: 6.702713e-03	ci right 7.201640e-03	k: 2988	n:430000
Cons ci ratio: 2.176955e-01	ci left: 6.714949e-04	ci right 8.376771e-04	k: 323	n:430000
KS ci ratio: 9.050054e-03	ci left: 3.023977e-01	ci right 3.051491e-01	k: 130622	n:430000
ECM1   430000 perm   157 sec   (2742 perm/sec)   p_kst 3.037721e-01   p_cons 7.511628e-04   p_joint 6.948837e-03

Joint ci ratio: 7.351529e-02	ci left: 6.184345e-03	ci right 6.658553e-03	k: 2824	n:440000
Cons ci ratio: 2.157077e-01	ci left: 6.691299e-04	ci right 8.330145e-04	k: 329	n:440000
KS ci ratio: 8.948099e-03	ci left: 3.023437e-01	ci right 3.050635e-01	k: 133629	n:440000
ECM1   440000 perm   162 sec   (2713 perm/sec)   p_kst 3.037023e-01   p_cons 7.477273e-04   p_joint 6.418182e-03

Joint ci ratio: 7.366503e-02	ci left: 6.022902e-03	ci right 6.485712e-03	k: 2813	n:450000
Cons ci ratio: 2.134558e-01	ci left: 6.689799e-04	ci right 8.308933e-04	k: 336	n:450000
KS ci ratio: 8.845935e-03	ci left: 3.024631e-01	ci right 3.051527e-01	k: 136713	n:450000
ECM1   450000 perm   168 sec   (2685 perm/sec)   p_kst 3.038067e-01   p_cons 7.466667e-04   p_joint 6.251111e-03

Joint ci ratio: 7.495380e-02	ci left: 5.689249e-03	ci right 6.134401e-03	k: 2718	n:460000
Cons ci ratio: 2.115809e-01	ci left: 6.667861e-04	ci right 8.265672e-04	k: 342	n:460000
KS ci ratio: 8.751058e-03	ci left: 3.023908e-01	ci right 3.050508e-01	k: 139711	n:460000
ECM1   460000 perm   173 sec   (2658 perm/sec)   p_kst 3.037196e-01   p_cons 7.434783e-04   p_joint 5.908696e-03

Joint ci ratio: 7.403305e-02	ci left: 5.710189e-03	ci right 6.151255e-03	k: 2786	n:470000
Cons ci ratio: 2.082670e-01	ci left: 6.747734e-04	ci right 8.336131e-04	k: 353	n:470000
KS ci ratio: 8.656774e-03	ci left: 3.024386e-01	ci right 3.050702e-01	k: 142764	n:470000
ECM1   470000 perm   179 sec   (2632 perm/sec)   p_kst 3.037532e-01   p_cons 7.510638e-04   p_joint 5.927660e-03

Joint ci ratio: 7.565171e-02	ci left: 5.352000e-03	ci right 5.774835e-03	k: 2669	n:480000
Cons ci ratio: 2.071009e-01	ci left: 6.686153e-04	ci right 8.250126e-04	k: 357	n:480000
KS ci ratio: 8.563575e-03	ci left: 3.025782e-01	ci right 3.051825e-01	k: 145862	n:480000
ECM1   480000 perm   184 sec   (2607 perm/sec)   p_kst 3.038792e-01   p_cons 7.437500e-04   p_joint 5.560417e-03

Joint ci ratio: 7.621775e-02	ci left: 5.164676e-03	ci right 5.575899e-03	k: 2630	n:490000
Cons ci ratio: 2.051055e-01	ci left: 6.685186e-04	ci right 8.231976e-04	k: 364	n:490000
KS ci ratio: 8.474793e-03	ci left: 3.026388e-01	ci right 3.052165e-01	k: 148924	n:490000
ECM1   490000 perm   190 sec   (2582 perm/sec)   p_kst 3.039265e-01   p_cons 7.428571e-04   p_joint 5.367347e-03

Joint ci ratio: 7.584603e-02	ci left: 5.112389e-03	ci right 5.517376e-03	k: 2656	n:500000
Cons ci ratio: 2.023518e-01	ci left: 6.741282e-04	ci right 8.277522e-04	k: 374	n:500000
KS ci ratio: 8.389192e-03	ci left: 3.026732e-01	ci right 3.052251e-01	k: 151974	n:500000
ECM1   500000 perm   196 sec   (2557 perm/sec)   p_kst 3.039480e-01   p_cons 7.480000e-04   p_joint 5.312000e-03

Joint ci ratio: 7.512859e-02	ci left: 5.110258e-03	ci right 5.511079e-03	k: 2707	n:510000
Cons ci ratio: 2.012818e-01	ci left: 6.683565e-04	ci right 8.197610e-04	k: 378	n:510000
KS ci ratio: 8.305749e-03	ci left: 3.027260e-01	ci right 3.052527e-01	k: 155034	n:510000
ECM1   510000 perm   201 sec   (2533 perm/sec)   p_kst 3.039882e-01   p_cons 7.411765e-04   p_joint 5.307843e-03

Joint ci ratio: 7.150625e-02	ci left: 5.540622e-03	ci right 5.953376e-03	k: 2987	n:520000
Cons ci ratio: 1.994485e-01	ci left: 6.682897e-04	ci right 8.181324e-04	k: 385	n:520000
KS ci ratio: 8.226467e-03	ci left: 3.026884e-01	ci right 3.051907e-01	k: 158048	n:520000
ECM1   520000 perm   207 sec   (2508 perm/sec)   p_kst 3.039385e-01   p_cons 7.403846e-04   p_joint 5.744231e-03

Joint ci ratio: 7.091588e-02	ci left: 5.528740e-03	ci right 5.937069e-03	k: 3037	n:530000
Cons ci ratio: 1.979165e-01	ci left: 6.664380e-04	ci right 8.145793e-04	k: 391	n:530000
KS ci ratio: 8.149267e-03	ci left: 3.026600e-01	ci right 3.051384e-01	k: 161066	n:530000
ECM1   530000 perm   213 sec   (2485 perm/sec)   p_kst 3.038981e-01   p_cons 7.377358e-04   p_joint 5.730189e-03

Joint ci ratio: 7.061642e-02	ci left: 5.473647e-03	ci right 5.876129e-03	k: 3063	n:540000
Cons ci ratio: 1.966666e-01	ci left: 6.628983e-04	ci right 8.092107e-04	k: 396	n:540000
KS ci ratio: 8.072610e-03	ci left: 3.027159e-01	ci right 3.051714e-01	k: 164129	n:540000
ECM1   540000 perm   219 sec   (2461 perm/sec)   p_kst 3.039426e-01   p_cons 7.333333e-04   p_joint 5.672222e-03

Joint ci ratio: 7.120669e-02	ci left: 5.284810e-03	ci right 5.676790e-03	k: 3013	n:550000
Cons ci ratio: 1.956839e-01	ci left: 6.577610e-04	ci right 8.021275e-04	k: 400	n:550000
KS ci ratio: 7.999555e-03	ci left: 3.026919e-01	ci right 3.051248e-01	k: 167149	n:550000
ECM1   550000 perm   226 sec   (2438 perm/sec)   p_kst 3.039073e-01   p_cons 7.272727e-04   p_joint 5.478182e-03

Joint ci ratio: 6.887121e-02	ci left: 5.553635e-03	ci right 5.951504e-03	k: 3220	n:560000
Cons ci ratio: 1.942364e-01	ci left: 6.562065e-04	ci right 7.990405e-04	k: 406	n:560000
KS ci ratio: 7.927878e-03	ci left: 3.026991e-01	ci right 3.051101e-01	k: 170186	n:560000
ECM1   560000 perm   232 sec   (2416 perm/sec)   p_kst 3.039036e-01   p_cons 7.250000e-04   p_joint 5.750000e-03

Joint ci ratio: 6.314464e-02	ci left: 6.503666e-03	ci right 6.929441e-03	k: 3827	n:570000
Cons ci ratio: 1.923550e-01	ci left: 6.580501e-04	ci right 7.997356e-04	k: 414	n:570000
KS ci ratio: 7.858518e-03	ci left: 3.026833e-01	ci right 3.050731e-01	k: 173210	n:570000
ECM1   570000 perm   238 sec   (2395 perm/sec)   p_kst 3.038772e-01   p_cons 7.263158e-04   p_joint 6.714035e-03

Joint ci ratio: 6.258303e-02	ci left: 6.508630e-03	ci right 6.930803e-03	k: 3896	n:580000
Cons ci ratio: 1.909796e-01	ci left: 6.565528e-04	ci right 7.967878e-04	k: 420	n:580000
KS ci ratio: 7.789805e-03	ci left: 3.027302e-01	ci right 3.050993e-01	k: 176270	n:580000
ECM1   580000 perm   244 sec   (2372 perm/sec)   p_kst 3.039138e-01   p_cons 7.241379e-04   p_joint 6.717241e-03

Joint ci ratio: 6.220215e-02	ci left: 6.478398e-03	ci right 6.895960e-03	k: 3944	n:590000
Cons ci ratio: 1.894115e-01	ci left: 6.567243e-04	ci right 7.957116e-04	k: 427	n:590000
KS ci ratio: 7.722460e-03	ci left: 3.027976e-01	ci right 3.051467e-01	k: 179343	n:590000
ECM1   590000 perm   251 sec   (2353 perm/sec)   p_kst 3.039712e-01   p_cons 7.237288e-04   p_joint 6.684746e-03

Joint ci ratio: 6.421042e-02	ci left: 5.975055e-03	ci right 6.373070e-03	k: 3703	n:600000
Cons ci ratio: 1.878813e-01	ci left: 6.568946e-04	ci right 7.946667e-04	k: 434	n:600000
KS ci ratio: 7.654963e-03	ci left: 3.029661e-01	ci right 3.052958e-01	k: 182478	n:600000
ECM1   600000 perm   257 sec   (2333 perm/sec)   p_kst 3.041300e-01   p_cons 7.233333e-04   p_joint 6.171667e-03

Joint ci ratio: 6.367116e-02	ci left: 5.978731e-03	ci right 6.373522e-03	k: 3766	n:610000
Cons ci ratio: 1.868111e-01	ci left: 6.539380e-04	ci right 7.902202e-04	k: 439	n:610000
KS ci ratio: 7.589410e-03	ci left: 3.031176e-01	ci right 3.054285e-01	k: 185606	n:610000
ECM1   610000 perm   264 sec   (2314 perm/sec)   p_kst 3.042721e-01   p_cons 7.196721e-04   p_joint 6.173770e-03

Joint ci ratio: 6.824391e-02	ci left: 5.112848e-03	ci right 5.475669e-03	k: 3281	n:620000
Cons ci ratio: 1.845183e-01	ci left: 6.603082e-04	ci right 7.960401e-04	k: 450	n:620000
KS ci ratio: 7.528035e-03	ci left: 3.031226e-01	ci right 3.054147e-01	k: 188646	n:620000
ECM1   620000 perm   270 sec   (2295 perm/sec)   p_kst 3.042677e-01   p_cons 7.258065e-04   p_joint 5.291935e-03

Joint ci ratio: 6.753679e-02	ci left: 5.139359e-03	ci right 5.500134e-03	k: 3350	n:630000
Cons ci ratio: 1.827041e-01	ci left: 6.634563e-04	ci right 7.983460e-04	k: 459	n:630000
KS ci ratio: 7.467957e-03	ci left: 3.031370e-01	ci right 3.054108e-01	k: 191692	n:630000
ECM1   630000 perm   277 sec   (2275 perm/sec)   p_kst 3.042730e-01   p_cons 7.285714e-04   p_joint 5.317460e-03

Joint ci ratio: 6.695954e-02	ci left: 5.148158e-03	ci right 5.506342e-03	k: 3408	n:640000
Cons ci ratio: 1.803659e-01	ci left: 6.709881e-04	ci right 8.054726e-04	k: 471	n:640000
KS ci ratio: 7.412715e-03	ci left: 3.029559e-01	ci right 3.052115e-01	k: 194613	n:640000
ECM1   640000 perm   284 sec   (2256 perm/sec)   p_kst 3.040828e-01   p_cons 7.359375e-04   p_joint 5.325000e-03

Joint ci ratio: 6.648366e-02	ci left: 5.143082e-03	ci right 5.498272e-03	k: 3457	n:650000
Cons ci ratio: 1.790432e-01	ci left: 6.709500e-04	ci right 8.043339e-04	k: 478	n:650000
KS ci ratio: 7.357314e-03	ci left: 3.028588e-01	ci right 3.050968e-01	k: 197585	n:650000
ECM1   650000 perm   291 sec   (2237 perm/sec)   p_kst 3.039769e-01   p_cons 7.353846e-04   p_joint 5.318462e-03

Joint ci ratio: 6.599887e-02	ci left: 5.141149e-03	ci right 5.493518e-03	k: 3508	n:660000
Cons ci ratio: 1.784858e-01	ci left: 6.651260e-04	ci right 7.968959e-04	k: 481	n:660000
KS ci ratio: 7.300679e-03	ci left: 3.029070e-01	ci right 3.051280e-01	k: 200651	n:660000
ECM1   660000 perm   297 sec   (2219 perm/sec)   p_kst 3.040167e-01   p_cons 7.287879e-04   p_joint 5.315152e-03

Joint ci ratio: 6.549679e-02	ci left: 5.143688e-03	ci right 5.493446e-03	k: 3562	n:670000
Cons ci ratio: 1.773853e-01	ci left: 6.637550e-04	ci right 7.943556e-04	k: 487	n:670000
KS ci ratio: 7.246635e-03	ci left: 3.028778e-01	ci right 3.050821e-01	k: 203666	n:670000
ECM1   670000 perm   304 sec   (2201 perm/sec)   p_kst 3.039791e-01   p_cons 7.268657e-04   p_joint 5.316418e-03

Joint ci ratio: 6.790738e-02	ci left: 4.710830e-03	ci right 5.043409e-03	k: 3315	n:680000
Cons ci ratio: 1.761266e-01	ci left: 6.638326e-04	ci right 7.934230e-04	k: 494	n:680000
KS ci ratio: 7.193848e-03	ci left: 3.028451e-01	ci right 3.050330e-01	k: 206678	n:680000
ECM1   680000 perm   312 sec   (2183 perm/sec)   p_kst 3.039382e-01   p_cons 7.264706e-04   p_joint 4.875000e-03

Joint ci ratio: 6.745143e-02	ci left: 4.706671e-03	ci right 5.036638e-03	k: 3360	n:690000
Cons ci ratio: 1.750690e-01	ci left: 6.625253e-04	ci right 7.910017e-04	k: 500	n:690000
KS ci ratio: 7.141857e-03	ci left: 3.028337e-01	ci right 3.050056e-01	k: 209704	n:690000
ECM1   690000 perm   319 sec   (2164 perm/sec)   p_kst 3.039188e-01   p_cons 7.246377e-04   p_joint 4.869565e-03

Joint ci ratio: 6.714336e-02	ci left: 4.682971e-03	ci right 5.009719e-03	k: 3391	n:700000
Cons ci ratio: 1.740301e-01	ci left: 6.612576e-04	ci right 7.886472e-04	k: 506	n:700000
KS ci ratio: 7.090665e-03	ci left: 3.028412e-01	ci right 3.049976e-01	k: 212743	n:700000
ECM1   700000 perm   326 sec   (2147 perm/sec)   p_kst 3.039186e-01   p_cons 7.228571e-04   p_joint 4.844286e-03

Joint ci ratio: 6.730535e-02	ci left: 4.594851e-03	ci right 4.916253e-03	k: 3375	n:710000
Cons ci ratio: 1.728411e-01	ci left: 6.613753e-04	ci right 7.878262e-04	k: 513	n:710000
KS ci ratio: 7.040956e-03	ci left: 3.028246e-01	ci right 3.049657e-01	k: 215765	n:710000
ECM1   710000 perm   333 sec   (2130 perm/sec)   p_kst 3.038944e-01   p_cons 7.225352e-04   p_joint 4.753521e-03

Joint ci ratio: 6.579722e-02	ci left: 4.744106e-03	ci right 5.068230e-03	k: 3531	n:720000
Cons ci ratio: 1.711836e-01	ci left: 6.654806e-04	ci right 7.913703e-04	k: 523	n:720000
KS ci ratio: 6.991889e-03	ci left: 3.028322e-01	ci right 3.049583e-01	k: 218804	n:720000
ECM1   720000 perm   341 sec   (2113 perm/sec)   p_kst 3.038944e-01   p_cons 7.263889e-04   p_joint 4.904167e-03

Joint ci ratio: 6.487385e-02	ci left: 4.815220e-03	ci right 5.139412e-03	k: 3632	n:730000
Cons ci ratio: 1.690981e-01	ci left: 6.734146e-04	ci right 7.990951e-04	k: 536	n:730000
KS ci ratio: 6.942440e-03	ci left: 3.029244e-01	ci right 3.050361e-01	k: 221905	n:730000
ECM1   730000 perm   348 sec   (2097 perm/sec)   p_kst 3.039795e-01   p_cons 7.342466e-04   p_joint 4.975342e-03

Joint ci ratio: 6.448479e-02	ci left: 4.808647e-03	ci right 5.130382e-03	k: 3676	n:740000
Cons ci ratio: 1.686283e-01	ci left: 6.681969e-04	ci right 7.925220e-04	k: 539	n:740000
KS ci ratio: 6.896138e-03	ci left: 3.028846e-01	ci right 3.049818e-01	k: 224910	n:740000
ECM1   740000 perm   356 sec   (2080 perm/sec)   p_kst 3.039324e-01   p_cons 7.283784e-04   p_joint 4.967568e-03

Joint ci ratio: 6.401625e-02	ci left: 4.815375e-03	ci right 5.135133e-03	k: 3730	n:750000
Cons ci ratio: 1.675459e-01	ci left: 6.682283e-04	ci right 7.916806e-04	k: 546	n:750000
KS ci ratio: 6.849995e-03	ci left: 3.028925e-01	ci right 3.049757e-01	k: 227950	n:750000
ECM1   750000 perm   363 sec   (2064 perm/sec)   p_kst 3.039333e-01   p_cons 7.280000e-04   p_joint 4.973333e-03

Joint ci ratio: 6.448022e-02	ci left: 4.683388e-03	ci right 4.996720e-03	k: 3677	n:760000
Cons ci ratio: 1.672410e-01	ci left: 6.619570e-04	ci right 7.840057e-04	k: 548	n:760000
KS ci ratio: 6.803941e-03	ci left: 3.029515e-01	ci right 3.050211e-01	k: 231029	n:760000
ECM1   760000 perm   371 sec   (2049 perm/sec)   p_kst 3.039855e-01   p_cons 7.210526e-04   p_joint 4.838158e-03

Joint ci ratio: 6.408949e-02	ci left: 4.680067e-03	ci right 4.991209e-03	k: 3722	n:770000
Cons ci ratio: 1.661849e-01	ci left: 6.620718e-04	ci right 7.832937e-04	k: 555	n:770000
KS ci ratio: 6.759322e-03	ci left: 3.029766e-01	ci right 3.050327e-01	k: 234083	n:770000
ECM1   770000 perm   379 sec   (2033 perm/sec)   p_kst 3.040039e-01   p_cons 7.207792e-04   p_joint 4.833766e-03

Joint ci ratio: 6.434377e-02	ci left: 4.583476e-03	ci right 4.889450e-03	k: 3693	n:780000
Cons ci ratio: 1.657388e-01	ci left: 6.572700e-04	ci right 7.772574e-04	k: 558	n:780000
KS ci ratio: 6.717870e-03	ci left: 3.028563e-01	ci right 3.048990e-01	k: 237024	n:780000
ECM1   780000 perm   387 sec   (2017 perm/sec)   p_kst 3.038769e-01   p_cons 7.153846e-04   p_joint 4.734615e-03

Joint ci ratio: 6.382699e-02	ci left: 4.600191e-03	ci right 4.904723e-03	k: 3753	n:790000
Cons ci ratio: 1.650027e-01	ci left: 6.550172e-04	ci right 7.740096e-04	k: 563	n:790000
KS ci ratio: 6.675971e-03	ci left: 3.028150e-01	ci right 3.048446e-01	k: 240025	n:790000
ECM1   790000 perm   395 sec   (2002 perm/sec)   p_kst 3.038291e-01   p_cons 7.126582e-04   p_joint 4.750633e-03

Joint ci ratio: 6.540549e-02	ci left: 4.323763e-03	ci right 4.617343e-03	k: 3575	n:800000
Cons ci ratio: 1.645661e-01	ci left: 6.504247e-04	ci right 7.682392e-04	k: 566	n:800000
KS ci ratio: 6.636023e-03	ci left: 3.026999e-01	ci right 3.047165e-01	k: 242966	n:800000
ECM1   800000 perm   403 sec   (1987 perm/sec)   p_kst 3.037075e-01   p_cons 7.075000e-04   p_joint 4.468750e-03

Joint ci ratio: 6.496176e-02	ci left: 4.329892e-03	ci right 4.621818e-03	k: 3624	n:810000
Cons ci ratio: 1.639890e-01	ci left: 6.471299e-04	ci right 7.638960e-04	k: 570	n:810000
KS ci ratio: 6.594972e-03	ci left: 3.027036e-01	ci right 3.047077e-01	k: 246001	n:810000
ECM1   810000 perm   410 sec   (1973 perm/sec)   p_kst 3.037049e-01   p_cons 7.037037e-04   p_joint 4.474074e-03

Joint ci ratio: 6.451813e-02	ci left: 4.337077e-03	ci right 4.627416e-03	k: 3674	n:820000
Cons ci ratio: 1.625713e-01	ci left: 6.509350e-04	ci right 7.672730e-04	k: 580	n:820000
KS ci ratio: 6.554580e-03	ci left: 3.027133e-01	ci right 3.047052e-01	k: 249041	n:820000
ECM1   820000 perm   419 sec   (1959 perm/sec)   p_kst 3.037085e-01   p_cons 7.073171e-04   p_joint 4.480488e-03

Joint ci ratio: 6.418739e-02	ci left: 4.329869e-03	ci right 4.618184e-03	k: 3712	n:830000
Cons ci ratio: 1.622927e-01	ci left: 6.454040e-04	ci right 7.605365e-04	k: 582	n:830000
KS ci ratio: 6.515014e-03	ci left: 3.027168e-01	ci right 3.046966e-01	k: 252076	n:830000
ECM1   830000 perm   427 sec   (1945 perm/sec)   p_kst 3.037060e-01   p_cons 7.012048e-04   p_joint 4.472289e-03

Joint ci ratio: 6.377636e-02	ci left: 4.334552e-03	ci right 4.621262e-03	k: 3760	n:840000
Cons ci ratio: 1.617391e-01	ci left: 6.422893e-04	ci right 7.564374e-04	k: 586	n:840000
KS ci ratio: 6.475573e-03	ci left: 3.027583e-01	ci right 3.047264e-01	k: 255143	n:840000
ECM1   840000 perm   435 sec   (1931 perm/sec)   p_kst 3.037417e-01   p_cons 6.976190e-04   p_joint 4.476190e-03

Joint ci ratio: 6.350724e-02	ci left: 4.320604e-03	ci right 4.605142e-03	k: 3792	n:850000
Cons ci ratio: 1.613277e-01	ci left: 6.381196e-04	ci right 7.512102e-04	k: 589	n:850000
KS ci ratio: 6.437895e-03	ci left: 3.027295e-01	ci right 3.046859e-01	k: 258151	n:850000
ECM1   850000 perm   443 sec   (1917 perm/sec)   p_kst 3.037071e-01   p_cons 6.929412e-04   p_joint 4.461176e-03

Joint ci ratio: 6.321660e-02	ci left: 4.310417e-03	ci right 4.592937e-03	k: 3827	n:860000
Cons ci ratio: 1.602449e-01	ci left: 6.396277e-04	ci right 7.521515e-04	k: 597	n:860000
KS ci ratio: 6.401079e-03	ci left: 3.026875e-01	ci right 3.046324e-01	k: 261147	n:860000
ECM1   860000 perm   452 sec   (1904 perm/sec)   p_kst 3.036593e-01   p_cons 6.941860e-04   p_joint 4.450000e-03

Joint ci ratio: 6.287272e-02	ci left: 4.308387e-03	ci right 4.589181e-03	k: 3869	n:870000
Cons ci ratio: 1.598448e-01	ci left: 6.355857e-04	ci right 7.470925e-04	k: 600	n:870000
KS ci ratio: 6.363936e-03	ci left: 3.027097e-01	ci right 3.046434e-01	k: 264198	n:870000
ECM1   870000 perm   460 sec   (1890 perm/sec)   p_kst 3.036759e-01   p_cons 6.896552e-04   p_joint 4.447126e-03

Joint ci ratio: 6.244627e-02	ci left: 4.318712e-03	ci right 4.598202e-03	k: 3922	n:880000
Cons ci ratio: 1.578859e-01	ci left: 6.447312e-04	ci right 7.563250e-04	k: 615	n:880000
KS ci ratio: 6.328963e-03	ci left: 3.026292e-01	ci right 3.045517e-01	k: 267159	n:880000
ECM1   880000 perm   469 sec   (1877 perm/sec)   p_kst 3.035898e-01   p_cons 6.988636e-04   p_joint 4.456818e-03

Joint ci ratio: 6.210687e-02	ci left: 4.317749e-03	ci right 4.595603e-03	k: 3965	n:890000
Cons ci ratio: 1.571227e-01	ci left: 6.439629e-04	ci right 7.548341e-04	k: 621	n:890000
KS ci ratio: 6.293455e-03	ci left: 3.026246e-01	ci right 3.045362e-01	k: 270186	n:890000
ECM1   890000 perm   478 sec   (1864 perm/sec)   p_kst 3.035798e-01   p_cons 6.977528e-04   p_joint 4.455056e-03

Joint ci ratio: 6.333931e-02	ci left: 4.103520e-03	ci right 4.373020e-03	k: 3813	n:900000
Cons ci ratio: 1.563704e-01	ci left: 6.432129e-04	ci right 7.533750e-04	k: 627	n:900000
KS ci ratio: 6.259098e-03	ci left: 3.025824e-01	ci right 3.044833e-01	k: 273179	n:900000
ECM1   900000 perm   486 sec   (1851 perm/sec)   p_kst 3.035322e-01   p_cons 6.966667e-04   p_joint 4.236667e-03

Joint ci ratio: 6.322437e-02	ci left: 4.073565e-03	ci right 4.340595e-03	k: 3827	n:910000
Cons ci ratio: 1.559985e-01	ci left: 6.393124e-04	ci right 7.485217e-04	k: 630	n:910000
KS ci ratio: 6.223890e-03	ci left: 3.026367e-01	ci right 3.045272e-01	k: 276259	n:910000
ECM1   910000 perm   495 sec   (1838 perm/sec)   p_kst 3.035813e-01   p_cons 6.923077e-04   p_joint 4.205495e-03

Joint ci ratio: 6.281519e-02	ci left: 4.082779e-03	ci right 4.348618e-03	k: 3877	n:920000
Cons ci ratio: 1.550189e-01	ci left: 6.407207e-04	ci right 7.494193e-04	k: 638	n:920000
KS ci ratio: 6.190574e-03	ci left: 3.026008e-01	ci right 3.044809e-01	k: 279257	n:920000
ECM1   920000 perm   504 sec   (1825 perm/sec)   p_kst 3.035402e-01   p_cons 6.934783e-04   p_joint 4.214130e-03

Joint ci ratio: 6.246178e-02	ci left: 4.085450e-03	ci right 4.349911e-03	k: 3921	n:930000
Cons ci ratio: 1.544161e-01	ci left: 6.389994e-04	ci right 7.469455e-04	k: 643	n:930000
KS ci ratio: 6.157411e-03	ci left: 3.025914e-01	ci right 3.044614e-01	k: 282279	n:930000
ECM1   930000 perm   513 sec   (1813 perm/sec)   p_kst 3.035258e-01   p_cons 6.913978e-04   p_joint 4.216129e-03

Joint ci ratio: 6.224047e-02	ci left: 4.071309e-03	ci right 4.333888e-03	k: 3949	n:940000
Cons ci ratio: 1.535836e-01	ci left: 6.393614e-04	ci right 7.467328e-04	k: 650	n:940000
KS ci ratio: 6.124083e-03	ci left: 3.026302e-01	ci right 3.044902e-01	k: 285346	n:940000
ECM1   940000 perm   522 sec   (1801 perm/sec)   p_kst 3.035596e-01   p_cons 6.914894e-04   p_joint 4.201064e-03

Joint ci ratio: 6.034581e-02	ci left: 4.288630e-03	ci right 4.556511e-03	k: 4200	n:950000
Cons ci ratio: 1.521870e-01	ci left: 6.447797e-04	ci right 7.519867e-04	k: 662	n:950000
KS ci ratio: 6.091486e-03	ci left: 3.026544e-01	ci right 3.045047e-01	k: 288400	n:950000
ECM1   950000 perm   531 sec   (1789 perm/sec)   p_kst 3.035789e-01   p_cons 6.968421e-04   p_joint 4.421053e-03

Joint ci ratio: 6.044846e-02	ci left: 4.229589e-03	ci right 4.494248e-03	k: 4186	n:960000
Cons ci ratio: 1.512769e-01	ci left: 6.460803e-04	ci right 7.528029e-04	k: 670	n:960000
KS ci ratio: 6.059495e-03	ci left: 3.026719e-01	ci right 3.045126e-01	k: 291448	n:960000
ECM1   960000 perm   540 sec   (1777 perm/sec)   p_kst 3.035917e-01   p_cons 6.979167e-04   p_joint 4.360417e-03

Joint ci ratio: 6.019765e-02	ci left: 4.221523e-03	ci right 4.484543e-03	k: 4221	n:970000
Cons ci ratio: 1.510524e-01	ci left: 6.414034e-04	ci right 7.471820e-04	k: 672	n:970000
KS ci ratio: 6.027517e-03	ci left: 3.027231e-01	ci right 3.045543e-01	k: 294529	n:970000
ECM1   970000 perm   549 sec   (1765 perm/sec)   p_kst 3.036381e-01   p_cons 6.927835e-04   p_joint 4.351546e-03

Joint ci ratio: 5.995701e-02	ci left: 4.212618e-03	ci right 4.473998e-03	k: 4255	n:980000
Cons ci ratio: 1.506057e-01	ci left: 6.387860e-04	ci right 7.437934e-04	k: 676	n:980000
KS ci ratio: 5.996734e-03	ci left: 3.027244e-01	ci right 3.045462e-01	k: 297562	n:980000
ECM1   980000 perm   559 sec   (1754 perm/sec)   p_kst 3.036347e-01   p_cons 6.897959e-04   p_joint 4.341837e-03

Joint ci ratio: 5.967035e-02	ci left: 4.210861e-03	ci right 4.470840e-03	k: 4296	n:990000
Cons ci ratio: 1.500528e-01	ci left: 6.371941e-04	ci right 7.415207e-04	k: 681	n:990000
KS ci ratio: 5.966761e-03	ci left: 3.027014e-01	ci right 3.045139e-01	k: 300571	n:990000
ECM1   990000 perm   568 sec   (1743 perm/sec)   p_kst 3.036071e-01   p_cons 6.878788e-04   p_joint 4.339394e-03

Joint ci ratio: 5.934657e-02	ci left: 4.215054e-03	ci right 4.473830e-03	k: 4343	n:1000000
Cons ci ratio: 1.490722e-01	ci left: 6.394854e-04	ci right 7.434420e-04	k: 690	n:1000000
KS ci ratio: 5.937036e-03	ci left: 3.026929e-01	ci right 3.044963e-01	k: 303594	n:1000000
ECM1   1000000 perm   577 sec   (1732 perm/sec)   p_kst 3.035940e-01   p_cons 6.900000e-04   p_joint 4.343000e-03

Joint ci ratio: 5.900775e-02	ci left: 4.222093e-03	ci right 4.479772e-03	k: 4393	n:1010000
Cons ci ratio: 1.478994e-01	ci left: 6.436404e-04	ci right 7.473765e-04	k: 701	n:1010000
KS ci ratio: 5.906755e-03	ci left: 3.027558e-01	ci right 3.045503e-01	k: 306689	n:1010000
ECM1   1010000 perm   587 sec   (1721 perm/sec)   p_kst 3.036525e-01   p_cons 6.940594e-04   p_joint 4.349505e-03

Joint ci ratio: 6.300788e-02	ci left: 3.661253e-03	ci right 3.900402e-03	k: 3855	n:1020000
Cons ci ratio: 1.477946e-01	ci left: 6.382742e-04	ci right 7.410660e-04	k: 702	n:1020000
KS ci ratio: 5.878772e-03	ci left: 3.026852e-01	ci right 3.044708e-01	k: 309649	n:1020000
ECM1   1020000 perm   597 sec   (1710 perm/sec)   p_kst 3.035775e-01   p_cons 6.882353e-04   p_joint 3.779412e-03

Joint ci ratio: 6.365858e-02	ci left: 3.551171e-03	ci right 3.785614e-03	k: 3777	n:1030000
Cons ci ratio: 1.476900e-01	ci left: 6.330122e-04	ci right 7.348781e-04	k: 703	n:1030000
KS ci ratio: 5.850968e-03	ci left: 3.026316e-01	ci right 3.044084e-01	k: 312625	n:1030000
ECM1   1030000 perm   606 sec   (1699 perm/sec)   p_kst 3.035194e-01   p_cons 6.825243e-04   p_joint 3.666990e-03

Joint ci ratio: 5.854498e-02	ci left: 4.166617e-03	ci right 4.418848e-03	k: 4463	n:1040000
Cons ci ratio: 1.468578e-01	ci left: 6.343345e-04	ci right 7.357875e-04	k: 711	n:1040000
KS ci ratio: 5.823157e-03	ci left: 3.026078e-01	ci right 3.043760e-01	k: 315631	n:1040000
ECM1   1040000 perm   616 sec   (1688 perm/sec)   p_kst 3.034913e-01   p_cons 6.836538e-04   p_joint 4.291346e-03

Joint ci ratio: 5.895879e-02	ci left: 4.068749e-03	ci right 4.316855e-03	k: 4401	n:1050000
Cons ci ratio: 1.461412e-01	ci left: 6.347155e-04	ci right 7.356909e-04	k: 718	n:1050000
KS ci ratio: 5.795687e-03	ci left: 3.025883e-01	ci right 3.043480e-01	k: 318641	n:1050000
ECM1   1050000 perm   626 sec   (1678 perm/sec)   p_kst 3.034676e-01   p_cons 6.838095e-04   p_joint 4.191429e-03

Joint ci ratio: 5.870606e-02	ci left: 4.065686e-03	ci right 4.312507e-03	k: 4439	n:1060000
Cons ci ratio: 1.456358e-01	ci left: 6.332724e-04	ci right 7.336395e-04	k: 723	n:1060000
KS ci ratio: 5.769503e-03	ci left: 3.025032e-01	ci right 3.042545e-01	k: 321581	n:1060000
ECM1   1060000 perm   636 sec   (1667 perm/sec)   p_kst 3.033783e-01   p_cons 6.820755e-04   p_joint 4.187736e-03

Joint ci ratio: 5.767285e-02	ci left: 4.175053e-03	ci right 4.423904e-03	k: 4599	n:1070000
Cons ci ratio: 1.447388e-01	ci left: 6.354597e-04	ci right 7.354995e-04	k: 732	n:1070000
KS ci ratio: 5.742603e-03	ci left: 3.024982e-01	ci right 3.042412e-01	k: 324605	n:1070000
ECM1   1070000 perm   646 sec   (1657 perm/sec)   p_kst 3.033692e-01   p_cons 6.841121e-04   p_joint 4.298131e-03

Joint ci ratio: 5.733081e-02	ci left: 4.186589e-03	ci right 4.434599e-03	k: 4654	n:1080000
Cons ci ratio: 1.434718e-01	ci left: 6.411790e-04	ci right 7.411599e-04	k: 745	n:1080000
KS ci ratio: 5.715113e-03	ci left: 3.025645e-01	ci right 3.042995e-01	k: 327706	n:1080000
ECM1   1080000 perm   656 sec   (1647 perm/sec)   p_kst 3.034315e-01   p_cons 6.898148e-04   p_joint 4.309259e-03

Joint ci ratio: 6.180478e-02	ci left: 3.563395e-03	ci right 3.791549e-03	k: 4007	n:1090000
Cons ci ratio: 1.428033e-01	ci left: 6.414886e-04	ci right 7.410121e-04	k: 752	n:1090000
KS ci ratio: 5.688803e-03	ci left: 3.025709e-01	ci right 3.042980e-01	k: 330743	n:1090000
ECM1   1090000 perm   666 sec   (1637 perm/sec)   p_kst 3.034339e-01   p_cons 6.899083e-04   p_joint 3.676147e-03

Joint ci ratio: 6.150620e-02	ci left: 3.565908e-03	ci right 3.793081e-03	k: 4046	n:1100000
Cons ci ratio: 1.417713e-01	ci left: 6.453010e-04	ci right 7.446313e-04	k: 763	n:1100000
KS ci ratio: 5.662330e-03	ci left: 3.026163e-01	ci right 3.043356e-01	k: 333823	n:1100000
ECM1   1100000 perm   676 sec   (1627 perm/sec)   p_kst 3.034755e-01   p_cons 6.936364e-04   p_joint 3.678182e-03

Joint ci ratio: 5.988763e-02	ci left: 3.729870e-03	ci right 3.961019e-03	k: 4267	n:1110000
Cons ci ratio: 1.408523e-01	ci left: 6.481781e-04	ci right 7.472501e-04	k: 773	n:1110000
KS ci ratio: 5.636535e-03	ci left: 3.026375e-01	ci right 3.043491e-01	k: 336877	n:1110000
ECM1   1110000 perm   686 sec   (1617 perm/sec)   p_kst 3.034928e-01   p_cons 6.963964e-04   p_joint 3.844144e-03

Joint ci ratio: 5.998750e-02	ci left: 3.684252e-03	ci right 3.912968e-03	k: 4253	n:1120000
Cons ci ratio: 1.403997e-01	ci left: 6.466979e-04	ci right 7.451996e-04	k: 778	n:1120000
KS ci ratio: 5.612465e-03	ci left: 3.025549e-01	ci right 3.042586e-01	k: 339815	n:1120000
ECM1   1120000 perm   697 sec   (1606 perm/sec)   p_kst 3.034062e-01   p_cons 6.946429e-04   p_joint 3.797321e-03

Joint ci ratio: 5.967253e-02	ci left: 3.690876e-03	ci right 3.918759e-03	k: 4298	n:1130000
Cons ci ratio: 1.392423e-01	ci left: 6.520771e-04	ci right 7.505113e-04	k: 791	n:1130000
KS ci ratio: 5.586851e-03	ci left: 3.026134e-01	ci right 3.043097e-01	k: 342911	n:1130000
ECM1   1130000 perm   708 sec   (1596 perm/sec)   p_kst 3.034611e-01   p_cons 7.000000e-04   p_joint 3.803540e-03

Joint ci ratio: 5.947941e-02	ci left: 3.682695e-03	ci right 3.909311e-03	k: 4326	n:1140000
Cons ci ratio: 1.388049e-01	ci left: 6.505905e-04	ci right 7.484664e-04	k: 796	n:1140000
KS ci ratio: 5.562682e-03	ci left: 3.025877e-01	ci right 3.042764e-01	k: 345912	n:1140000
ECM1   1140000 perm   719 sec   (1586 perm/sec)   p_kst 3.034316e-01   p_cons 6.982456e-04   p_joint 3.794737e-03

Joint ci ratio: 5.974430e-02	ci left: 3.618117e-03	ci right 3.841785e-03	k: 4288	n:1150000
Cons ci ratio: 1.382854e-01	ci left: 6.499697e-04	ci right 7.473561e-04	k: 802	n:1150000
KS ci ratio: 5.538219e-03	ci left: 3.026085e-01	ci right 3.042899e-01	k: 348966	n:1150000
ECM1   1150000 perm   729 sec   (1577 perm/sec)   p_kst 3.034487e-01   p_cons 6.973913e-04   p_joint 3.728696e-03

Joint ci ratio: 5.955047e-02	ci left: 3.610704e-03	ci right 3.833165e-03	k: 4316	n:1160000
Cons ci ratio: 1.378570e-01	ci left: 6.485279e-04	ci right 7.453726e-04	k: 807	n:1160000
KS ci ratio: 5.514436e-03	ci left: 3.026014e-01	ci right 3.042755e-01	k: 351988	n:1160000
ECM1   1160000 perm   740 sec   (1567 perm/sec)   p_kst 3.034379e-01   p_cons 6.956897e-04   p_joint 3.720690e-03

Joint ci ratio: 5.995704e-02	ci left: 3.531007e-03	ci right 3.750094e-03	k: 4258	n:1170000
Cons ci ratio: 1.375172e-01	ci left: 6.462859e-04	ci right 7.425384e-04	k: 811	n:1170000
KS ci ratio: 5.490647e-03	ci left: 3.026183e-01	ci right 3.042853e-01	k: 355038	n:1170000
ECM1   1170000 perm   751 sec   (1558 perm/sec)   p_kst 3.034513e-01   p_cons 6.931624e-04   p_joint 3.639316e-03

Joint ci ratio: 5.967039e-02	ci left: 3.535309e-03	ci right 3.753579e-03	k: 4299	n:1180000
Cons ci ratio: 1.370120e-01	ci left: 6.457190e-04	ci right 7.415050e-04	k: 817	n:1180000
KS ci ratio: 5.466855e-03	ci left: 3.026586e-01	ci right 3.043186e-01	k: 358116	n:1180000
ECM1   1180000 perm   762 sec   (1549 perm/sec)   p_kst 3.034881e-01   p_cons 6.923729e-04   p_joint 3.643220e-03

Joint ci ratio: 5.933982e-02	ci left: 3.545338e-03	ci right 3.762972e-03	k: 4347	n:1190000
Cons ci ratio: 1.362643e-01	ci left: 6.475974e-04	ci right 7.430952e-04	k: 826	n:1190000
KS ci ratio: 5.443911e-03	ci left: 3.026564e-01	ci right 3.043093e-01	k: 361144	n:1190000
ECM1   1190000 perm   773 sec   (1540 perm/sec)   p_kst 3.034824e-01   p_cons 6.941176e-04   p_joint 3.652941e-03

Joint ci ratio: 5.749842e-02	ci left: 3.747372e-03	ci right 3.970033e-03	k: 4629	n:1200000
Cons ci ratio: 1.355287e-01	ci left: 6.494458e-04	ci right 7.446575e-04	k: 835	n:1200000
KS ci ratio: 5.421382e-03	ci left: 3.026441e-01	ci right 3.042901e-01	k: 364160	n:1200000
ECM1   1200000 perm   784 sec   (1531 perm/sec)   p_kst 3.034667e-01   p_cons 6.958333e-04   p_joint 3.857500e-03

Joint ci ratio: 5.723931e-02	ci left: 3.750615e-03	ci right 3.972431e-03	k: 4671	n:1210000
Cons ci ratio: 1.346456e-01	ci left: 6.528622e-04	ci right 7.479012e-04	k: 846	n:1210000
KS ci ratio: 5.398835e-03	ci left: 3.026552e-01	ci right 3.042945e-01	k: 367204	n:1210000
ECM1   1210000 perm   795 sec   (1522 perm/sec)   p_kst 3.034744e-01   p_cons 6.991736e-04   p_joint 3.860331e-03

Joint ci ratio: 5.706881e-02	ci left: 3.742495e-03	ci right 3.963150e-03	k: 4699	n:1220000
Cons ci ratio: 1.341713e-01	ci left: 6.522635e-04	ci right 7.468542e-04	k: 852	n:1220000
KS ci ratio: 5.377129e-03	ci left: 3.026220e-01	ci right 3.042544e-01	k: 370194	n:1220000
ECM1   1220000 perm   806 sec   (1514 perm/sec)   p_kst 3.034377e-01   p_cons 6.983607e-04   p_joint 3.851639e-03

Joint ci ratio: 5.680341e-02	ci left: 3.747331e-03	ci right 3.967210e-03	k: 4743	n:1230000
Cons ci ratio: 1.333915e-01	ci left: 6.548186e-04	ci right 7.491842e-04	k: 862	n:1230000
KS ci ratio: 5.354613e-03	ci left: 3.026737e-01	ci right 3.042996e-01	k: 373288	n:1230000
ECM1   1230000 perm   817 sec   (1505 perm/sec)   p_kst 3.034862e-01   p_cons 7.008130e-04   p_joint 3.856098e-03

Joint ci ratio: 5.732210e-02	ci left: 3.649535e-03	ci right 3.865696e-03	k: 4658	n:1240000
Cons ci ratio: 1.330836e-01	ci left: 6.526561e-04	ci right 7.464757e-04	k: 866	n:1240000
KS ci ratio: 5.332763e-03	ci left: 3.026940e-01	ci right 3.043133e-01	k: 376344	n:1240000
ECM1   1240000 perm   828 sec   (1497 perm/sec)   p_kst 3.035032e-01   p_cons 6.983871e-04   p_joint 3.756452e-03

Joint ci ratio: 5.754656e-02	ci left: 3.591950e-03	ci right 3.805560e-03	k: 4622	n:1250000
Cons ci ratio: 1.323981e-01	ci left: 6.543958e-04	ci right 7.479428e-04	k: 875	n:1250000
KS ci ratio: 5.311208e-03	ci left: 3.027116e-01	ci right 3.043245e-01	k: 379397	n:1250000
ECM1   1250000 perm   840 sec   (1489 perm/sec)   p_kst 3.035176e-01   p_cons 7.000000e-04   p_joint 3.697600e-03

Joint ci ratio: 5.781791e-02	ci left: 3.529804e-03	ci right 3.740742e-03	k: 4579	n:1260000
Cons ci ratio: 1.320970e-01	ci left: 6.522717e-04	ci right 7.452864e-04	k: 879	n:1260000
KS ci ratio: 5.289874e-03	ci left: 3.027322e-01	ci right 3.043386e-01	k: 382454	n:1260000
ECM1   1260000 perm   851 sec   (1481 perm/sec)   p_kst 3.035349e-01   p_cons 6.976190e-04   p_joint 3.634127e-03

Joint ci ratio: 5.761708e-02	ci left: 3.526843e-03	ci right 3.736848e-03	k: 4611	n:1270000
Cons ci ratio: 1.317979e-01	ci left: 6.501813e-04	ci right 7.426715e-04	k: 883	n:1270000
KS ci ratio: 5.268519e-03	ci left: 3.027744e-01	ci right 3.043745e-01	k: 385539	n:1270000
ECM1   1270000 perm   862 sec   (1473 perm/sec)   p_kst 3.035740e-01   p_cons 6.952756e-04   p_joint 3.630709e-03

Joint ci ratio: 5.763044e-02	ci left: 3.497748e-03	ci right 3.706070e-03	k: 4609	n:1280000
Cons ci ratio: 1.313530e-01	ci left: 6.496349e-04	ci right 7.417111e-04	k: 889	n:1280000
KS ci ratio: 5.248701e-03	ci left: 3.027129e-01	ci right 3.043067e-01	k: 388492	n:1280000
ECM1   1280000 perm   874 sec   (1464 perm/sec)   p_kst 3.035094e-01   p_cons 6.945313e-04   p_joint 3.600781e-03

Joint ci ratio: 5.735101e-02	ci left: 3.505017e-03	ci right 3.712726e-03	k: 4654	n:1290000
Cons ci ratio: 1.306937e-01	ci left: 6.513471e-04	ci right 7.431667e-04	k: 898	n:1290000
KS ci ratio: 5.228165e-03	ci left: 3.027283e-01	ci right 3.043160e-01	k: 391543	n:1290000
ECM1   1290000 perm   886 sec   (1455 perm/sec)   p_kst 3.035217e-01   p_cons 6.961240e-04   p_joint 3.607752e-03

Joint ci ratio: 5.709999e-02	ci left: 3.509142e-03	ci right 3.716156e-03	k: 4695	n:1300000
Cons ci ratio: 1.302598e-01	ci left: 6.508015e-04	ci right 7.422160e-04	k: 904	n:1300000
KS ci ratio: 5.208219e-03	ci left: 3.027151e-01	ci right 3.042966e-01	k: 394557	n:1300000
ECM1   1300000 perm   898 sec   (1447 perm/sec)   p_kst 3.035054e-01   p_cons 6.953846e-04   p_joint 3.611538e-03

Joint ci ratio: 5.687635e-02	ci left: 3.510197e-03	ci right 3.716435e-03	k: 4732	n:1310000
Cons ci ratio: 1.298302e-01	ci left: 6.502646e-04	ci right 7.412793e-04	k: 910	n:1310000
KS ci ratio: 5.188359e-03	ci left: 3.027135e-01	ci right 3.042889e-01	k: 397586	n:1310000
ECM1   1310000 perm   910 sec   (1439 perm/sec)   p_kst 3.035008e-01   p_cons 6.946565e-04   p_joint 3.612214e-03

Joint ci ratio: 5.661958e-02	ci left: 3.515718e-03	ci right 3.721318e-03	k: 4775	n:1320000
Cons ci ratio: 1.292638e-01	ci left: 6.512026e-04	ci right 7.419204e-04	k: 918	n:1320000
KS ci ratio: 5.168438e-03	ci left: 3.027354e-01	ci right 3.043049e-01	k: 400646	n:1320000
ECM1   1320000 perm   922 sec   (1432 perm/sec)   p_kst 3.035197e-01   p_cons 6.954545e-04   p_joint 3.617424e-03

Joint ci ratio: 5.643094e-02	ci left: 3.513004e-03	ci right 3.717738e-03	k: 4807	n:1330000
Cons ci ratio: 1.286354e-01	ci left: 6.528550e-04	ci right 7.433271e-04	k: 927	n:1330000
KS ci ratio: 5.148542e-03	ci left: 3.027735e-01	ci right 3.043371e-01	k: 403728	n:1330000
ECM1   1330000 perm   934 sec   (1424 perm/sec)   p_kst 3.035549e-01   p_cons 6.969925e-04   p_joint 3.614286e-03

Joint ci ratio: 5.634356e-02	ci left: 3.497823e-03	ci right 3.701346e-03	k: 4822	n:1340000
Cons ci ratio: 1.280160e-01	ci left: 6.544838e-04	ci right 7.447118e-04	k: 936	n:1340000
KS ci ratio: 5.129563e-03	ci left: 3.027544e-01	ci right 3.043121e-01	k: 406734	n:1340000
ECM1   1340000 perm   946 sec   (1417 perm/sec)   p_kst 3.035328e-01   p_cons 6.985075e-04   p_joint 3.598507e-03

Joint ci ratio: 5.614605e-02	ci left: 3.496745e-03	ci right 3.699468e-03	k: 4856	n:1350000
Cons ci ratio: 1.274729e-01	ci left: 6.553724e-04	ci right 7.453106e-04	k: 944	n:1350000
KS ci ratio: 5.110971e-03	ci left: 3.027208e-01	ci right 3.042727e-01	k: 409720	n:1350000
ECM1   1350000 perm   958 sec   (1409 perm/sec)   p_kst 3.034963e-01   p_cons 6.992593e-04   p_joint 3.597037e-03

Joint ci ratio: 5.641553e-02	ci left: 3.437683e-03	ci right 3.637970e-03	k: 4810	n:1360000
Cons ci ratio: 1.272041e-01	ci left: 6.534009e-04	ci right 7.428652e-04	k: 948	n:1360000
KS ci ratio: 5.092854e-03	ci left: 3.026649e-01	ci right 3.042110e-01	k: 412675	n:1360000
ECM1   1360000 perm   970 sec   (1402 perm/sec)   p_kst 3.034375e-01   p_cons 6.970588e-04   p_joint 3.536765e-03

Joint ci ratio: 5.617075e-02	ci left: 3.442816e-03	ci right 3.642504e-03	k: 4852	n:1370000
Cons ci ratio: 1.266051e-01	ci left: 6.549924e-04	ci right 7.442206e-04	k: 957	n:1370000
KS ci ratio: 5.074824e-03	ci left: 3.026186e-01	ci right 3.041589e-01	k: 415642	n:1370000
ECM1   1370000 perm   983 sec   (1394 perm/sec)   p_kst 3.033883e-01   p_cons 6.985401e-04   p_joint 3.541606e-03

Joint ci ratio: 5.595780e-02	ci left: 3.444304e-03	ci right 3.643296e-03	k: 4889	n:1380000
Cons ci ratio: 1.259493e-01	ci left: 6.572636e-04	ci right 7.463028e-04	k: 967	n:1380000
KS ci ratio: 5.056350e-03	ci left: 3.026258e-01	ci right 3.041605e-01	k: 418682	n:1380000
ECM1   1380000 perm   995 sec   (1387 perm/sec)   p_kst 3.033928e-01   p_cons 7.007246e-04   p_joint 3.542754e-03

Joint ci ratio: 5.575862e-02	ci left: 3.444353e-03	ci right 3.642617e-03	k: 4924	n:1390000
Cons ci ratio: 1.255608e-01	ci left: 6.567158e-04	ci right 7.453860e-04	k: 973	n:1390000
KS ci ratio: 5.037820e-03	ci left: 3.026545e-01	ci right 3.041837e-01	k: 421752	n:1390000
ECM1   1390000 perm   1007 sec   (1380 perm/sec)   p_kst 3.034187e-01   p_cons 7.000000e-04   p_joint 3.542446e-03

Joint ci ratio: 5.450205e-02	ci left: 3.581074e-03	ci right 3.782417e-03	k: 5153	n:1400000
Cons ci ratio: 1.249846e-01	ci left: 6.582521e-04	ci right 7.466917e-04	k: 982	n:1400000
KS ci ratio: 5.020493e-03	ci left: 3.025986e-01	ci right 3.041223e-01	k: 424704	n:1400000
ECM1   1400000 perm   1020 sec   (1373 perm/sec)   p_kst 3.033600e-01   p_cons 7.014286e-04   p_joint 3.680714e-03

Joint ci ratio: 5.423410e-02	ci left: 3.591355e-03	ci right 3.792252e-03	k: 5204	n:1410000
Cons ci ratio: 1.244163e-01	ci left: 6.597676e-04	ci right 7.479779e-04	k: 991	n:1410000
KS ci ratio: 5.002210e-03	ci left: 3.026391e-01	ci right 3.041574e-01	k: 427791	n:1410000
ECM1   1410000 perm   1032 sec   (1366 perm/sec)   p_kst 3.033979e-01   p_cons 7.028369e-04   p_joint 3.690780e-03

Joint ci ratio: 5.403202e-02	ci left: 3.593157e-03	ci right 3.793383e-03	k: 5243	n:1420000
Cons ci ratio: 1.241663e-01	ci left: 6.578506e-04	ci right 7.456150e-04	k: 995	n:1420000
KS ci ratio: 4.983967e-03	ci left: 3.026925e-01	ci right 3.042055e-01	k: 430897	n:1420000
ECM1   1420000 perm   1045 sec   (1359 perm/sec)   p_kst 3.034486e-01   p_cons 7.007042e-04   p_joint 3.692254e-03

Joint ci ratio: 5.384240e-02	ci left: 3.593555e-03	ci right 3.793078e-03	k: 5280	n:1430000
Cons ci ratio: 1.237323e-01	ci left: 6.579936e-04	ci right 7.454477e-04	k: 1002	n:1430000
KS ci ratio: 4.966785e-03	ci left: 3.026717e-01	ci right 3.041794e-01	k: 433898	n:1430000
ECM1   1430000 perm   1057 sec   (1352 perm/sec)   p_kst 3.034252e-01   p_cons 7.006993e-04   p_joint 3.692308e-03

Joint ci ratio: 5.364465e-02	ci left: 3.595320e-03	ci right 3.794185e-03	k: 5319	n:1440000
Cons ci ratio: 1.235478e-01	ci left: 6.554430e-04	ci right 7.424188e-04	k: 1005	n:1440000
KS ci ratio: 4.949715e-03	ci left: 3.026568e-01	ci right 3.041593e-01	k: 436907	n:1440000
ECM1   1440000 perm   1070 sec   (1346 perm/sec)   p_kst 3.034076e-01   p_cons 6.979167e-04   p_joint 3.693750e-03

Joint ci ratio: 5.388989e-02	ci left: 3.537863e-03	ci right 3.734473e-03	k: 5271	n:1450000
Cons ci ratio: 1.233031e-01	ci left: 6.535962e-04	ci right 7.401424e-04	k: 1009	n:1450000
KS ci ratio: 4.932288e-03	ci left: 3.026876e-01	ci right 3.041849e-01	k: 439982	n:1450000
ECM1   1450000 perm   1083 sec   (1339 perm/sec)   p_kst 3.034359e-01   p_cons 6.958621e-04   p_joint 3.635172e-03

Joint ci ratio: 5.374241e-02	ci left: 3.533227e-03	ci right 3.729025e-03	k: 5300	n:1460000
Cons ci ratio: 1.229991e-01	ci left: 6.524386e-04	ci right 7.386031e-04	k: 1014	n:1460000
KS ci ratio: 4.915912e-03	ci left: 3.026434e-01	ci right 3.041355e-01	k: 442948	n:1460000
ECM1   1460000 perm   1096 sec   (1332 perm/sec)   p_kst 3.033890e-01   p_cons 6.945205e-04   p_joint 3.630137e-03

Joint ci ratio: 5.353066e-02	ci left: 3.537379e-03	ci right 3.732611e-03	k: 5342	n:1470000
Cons ci ratio: 1.225771e-01	ci left: 6.526159e-04	ci right 7.384867e-04	k: 1021	n:1470000
KS ci ratio: 4.898768e-03	ci left: 3.026800e-01	ci right 3.041670e-01	k: 446032	n:1470000
ECM1   1470000 perm   1109 sec   (1326 perm/sec)   p_kst 3.034231e-01   p_cons 6.945578e-04   p_joint 3.634014e-03

Joint ci ratio: 5.333631e-02	ci left: 3.539478e-03	ci right 3.734094e-03	k: 5381	n:1480000
Cons ci ratio: 1.222189e-01	ci left: 6.521362e-04	ci right 7.376750e-04	k: 1027	n:1480000
KS ci ratio: 4.882270e-03	ci left: 3.026756e-01	ci right 3.041576e-01	k: 449056	n:1480000
ECM1   1480000 perm   1122 sec   (1319 perm/sec)   p_kst 3.034162e-01   p_cons 6.939189e-04   p_joint 3.635811e-03

Joint ci ratio: 5.367330e-02	ci left: 3.471355e-03	ci right 3.663469e-03	k: 5314	n:1490000
Cons ci ratio: 1.219820e-01	ci left: 6.503620e-04	ci right 7.354908e-04	k: 1031	n:1490000
KS ci ratio: 4.865690e-03	ci left: 3.026927e-01	ci right 3.041698e-01	k: 452112	n:1490000
ECM1   1490000 perm   1135 sec   (1313 perm/sec)   p_kst 3.034309e-01   p_cons 6.919463e-04   p_joint 3.566443e-03

Joint ci ratio: 5.349746e-02	ci left: 3.471233e-03	ci right 3.662692e-03	k: 5349	n:1500000
Cons ci ratio: 1.215119e-01	ci left: 6.511972e-04	ci right 7.360831e-04	k: 1039	n:1500000
KS ci ratio: 4.849477e-03	ci left: 3.026923e-01	ci right 3.041644e-01	k: 455142	n:1500000
ECM1   1500000 perm   1148 sec   (1306 perm/sec)   p_kst 3.034280e-01   p_cons 6.926667e-04   p_joint 3.566000e-03

Joint ci ratio: 5.331837e-02	ci left: 3.471767e-03	ci right 3.662595e-03	k: 5385	n:1510000
Cons ci ratio: 1.212209e-01	ci left: 6.500954e-04	ci right 7.346202e-04	k: 1044	n:1510000
KS ci ratio: 4.832925e-03	ci left: 3.027356e-01	ci right 3.042029e-01	k: 458238	n:1510000
ECM1   1510000 perm   1161 sec   (1300 perm/sec)   p_kst 3.034689e-01   p_cons 6.913907e-04   p_joint 3.566225e-03

Joint ci ratio: 5.311157e-02	ci left: 3.476191e-03	ci right 3.666498e-03	k: 5427	n:1520000
Cons ci ratio: 1.205306e-01	ci left: 6.534745e-04	ci right 7.379204e-04	k: 1056	n:1520000
KS ci ratio: 4.817464e-03	ci left: 3.026975e-01	ci right 3.041599e-01	k: 461211	n:1520000
ECM1   1520000 perm   1175 sec   (1294 perm/sec)   p_kst 3.034283e-01   p_cons 6.947368e-04   p_joint 3.570395e-03

Joint ci ratio: 5.297525e-02	ci left: 3.471529e-03	ci right 3.661077e-03	k: 5455	n:1530000
Cons ci ratio: 1.201335e-01	ci left: 6.536409e-04	ci right 7.378102e-04	k: 1063	n:1530000
KS ci ratio: 4.801756e-03	ci left: 3.026945e-01	ci right 3.041520e-01	k: 464237	n:1530000
ECM1   1530000 perm   1188 sec   (1288 perm/sec)   p_kst 3.034229e-01   p_cons 6.947712e-04   p_joint 3.565359e-03

Joint ci ratio: 5.197211e-02	ci left: 3.584848e-03	ci right 3.776766e-03	k: 5667	n:1540000
Cons ci ratio: 1.196843e-01	ci left: 6.544355e-04	ci right 7.383697e-04	k: 1071	n:1540000
KS ci ratio: 4.785540e-03	ci left: 3.027499e-01	ci right 3.042028e-01	k: 467353	n:1540000
ECM1   1540000 perm   1201 sec   (1282 perm/sec)   p_kst 3.034760e-01   p_cons 6.954545e-04   p_joint 3.679870e-03

Joint ci ratio: 4.600682e-02	ci left: 4.554663e-03	ci right 4.769775e-03	k: 7225	n:1550000
Cons ci ratio: 1.193508e-01	ci left: 6.539686e-04	ci right 7.375927e-04	k: 1077	n:1550000
KS ci ratio: 4.792665e-03	ci left: 3.007602e-01	ci right 3.022057e-01	k: 467298	n:1550000
ECM1   1550000 perm   1215 sec   (1276 perm/sec)   p_kst 3.014826e-01   p_cons 6.948387e-04   p_joint 4.661290e-03

Joint ci ratio: 4.586109e-02	ci left: 4.554615e-03	ci right 4.769025e-03	k: 7271	n:1560000
Cons ci ratio: 1.189104e-01	ci left: 6.547519e-04	ci right 7.381455e-04	k: 1085	n:1560000
KS ci ratio: 4.776863e-03	ci left: 3.007991e-01	ci right 3.022401e-01	k: 470370	n:1560000
ECM1   1560000 perm   1228 sec   (1270 perm/sec)   p_kst 3.015192e-01   p_cons 6.955128e-04   p_joint 4.660897e-03

Joint ci ratio: 4.587128e-02	ci left: 4.523714e-03	ci right 4.736718e-03	k: 7268	n:1570000
Cons ci ratio: 1.184206e-01	ci left: 6.561438e-04	ci right 7.393465e-04	k: 1094	n:1570000
KS ci ratio: 4.761231e-03	ci left: 3.008363e-01	ci right 3.022727e-01	k: 473440	n:1570000
ECM1   1570000 perm   1242 sec   (1264 perm/sec)   p_kst 3.015541e-01   p_cons 6.968153e-04   p_joint 4.629299e-03

Joint ci ratio: 4.571427e-02	ci left: 4.526366e-03	ci right 4.738747e-03	k: 7318	n:1580000
Cons ci ratio: 1.180976e-01	ci left: 6.556761e-04	ci right 7.385768e-04	k: 1100	n:1580000
KS ci ratio: 4.745759e-03	ci left: 3.008724e-01	ci right 3.023043e-01	k: 476509	n:1580000
ECM1   1580000 perm   1255 sec   (1258 perm/sec)   p_kst 3.015880e-01   p_cons 6.962025e-04   p_joint 4.631646e-03

Joint ci ratio: 4.564295e-02	ci left: 4.512198e-03	ci right 4.723575e-03	k: 7341	n:1590000
Cons ci ratio: 1.179371e-01	ci left: 6.533834e-04	ci right 7.358742e-04	k: 1103	n:1590000
KS ci ratio: 4.730966e-03	ci left: 3.008609e-01	ci right 3.022882e-01	k: 479503	n:1590000
ECM1   1590000 perm   1269 sec   (1253 perm/sec)   p_kst 3.015742e-01   p_cons 6.937107e-04   p_joint 4.616981e-03

Joint ci ratio: 4.548209e-02	ci left: 4.516127e-03	ci right 4.726922e-03	k: 7393	n:1600000
Cons ci ratio: 1.177242e-01	ci left: 6.517261e-04	ci right 7.338487e-04	k: 1107	n:1600000
KS ci ratio: 4.716178e-03	ci left: 3.008614e-01	ci right 3.022843e-01	k: 482516	n:1600000
ECM1   1600000 perm   1283 sec   (1247 perm/sec)   p_kst 3.015725e-01   p_cons 6.918750e-04   p_joint 4.620625e-03

Joint ci ratio: 4.536271e-02	ci left: 4.512025e-03	ci right 4.722062e-03	k: 7432	n:1610000
Cons ci ratio: 1.174595e-01	ci left: 6.506923e-04	ci right 7.324875e-04	k: 1112	n:1610000
KS ci ratio: 4.701278e-03	ci left: 3.008843e-01	ci right 3.023028e-01	k: 485565	n:1610000
ECM1   1610000 perm   1297 sec   (1241 perm/sec)   p_kst 3.015932e-01   p_cons 6.906832e-04   p_joint 4.616149e-03

Joint ci ratio: 4.519872e-02	ci left: 4.517129e-03	ci right 4.726623e-03	k: 7486	n:1620000
Cons ci ratio: 1.170919e-01	ci left: 6.508699e-04	ci right 7.324137e-04	k: 1119	n:1620000
KS ci ratio: 4.686993e-03	ci left: 3.008643e-01	ci right 3.022784e-01	k: 488545	n:1620000
ECM1   1620000 perm   1311 sec   (1236 perm/sec)   p_kst 3.015710e-01   p_cons 6.907407e-04   p_joint 4.620988e-03

Joint ci ratio: 4.503349e-02	ci left: 4.522778e-03	ci right 4.731748e-03	k: 7541	n:1630000
Cons ci ratio: 1.167277e-01	ci left: 6.510458e-04	ci right 7.323403e-04	k: 1126	n:1630000
KS ci ratio: 4.672802e-03	ci left: 3.008477e-01	ci right 3.022573e-01	k: 491530	n:1630000
ECM1   1630000 perm   1325 sec   (1230 perm/sec)   p_kst 3.015521e-01   p_cons 6.907975e-04   p_joint 4.626380e-03

Joint ci ratio: 4.488787e-02	ci left: 4.524743e-03	ci right 4.733110e-03	k: 7590	n:1640000
Cons ci ratio: 1.163668e-01	ci left: 6.512198e-04	ci right 7.322675e-04	k: 1133	n:1640000
KS ci ratio: 4.658895e-03	ci left: 3.008172e-01	ci right 3.022225e-01	k: 494492	n:1640000
ECM1   1640000 perm   1339 sec   (1224 perm/sec)   p_kst 3.015195e-01   p_cons 6.908537e-04   p_joint 4.628049e-03

Joint ci ratio: 4.473189e-02	ci left: 4.529082e-03	ci right 4.736905e-03	k: 7643	n:1650000
Cons ci ratio: 1.160602e-01	ci left: 6.508037e-04	ci right 7.315716e-04	k: 1139	n:1650000
KS ci ratio: 4.644463e-03	ci left: 3.008459e-01	ci right 3.022470e-01	k: 497551	n:1650000
ECM1   1650000 perm   1354 sec   (1219 perm/sec)   p_kst 3.015461e-01   p_cons 6.903030e-04   p_joint 4.632121e-03

Joint ci ratio: 4.460374e-02	ci left: 4.528008e-03	ci right 4.735172e-03	k: 7687	n:1660000
Cons ci ratio: 1.157560e-01	ci left: 6.503929e-04	ci right 7.308837e-04	k: 1145	n:1660000
KS ci ratio: 4.630204e-03	ci left: 3.008706e-01	ci right 3.022675e-01	k: 500604	n:1660000
ECM1   1660000 perm   1368 sec   (1214 perm/sec)   p_kst 3.015687e-01   p_cons 6.897590e-04   p_joint 4.630723e-03

Joint ci ratio: 4.444204e-02	ci left: 4.534054e-03	ci right 4.740723e-03	k: 7743	n:1670000
Cons ci ratio: 1.153541e-01	ci left: 6.511503e-04	ci right 7.314360e-04	k: 1153	n:1670000
KS ci ratio: 4.616246e-03	ci left: 3.008794e-01	ci right 3.022722e-01	k: 503631	n:1670000
ECM1   1670000 perm   1382 sec   (1209 perm/sec)   p_kst 3.015754e-01   p_cons 6.904192e-04   p_joint 4.636527e-03

Joint ci ratio: 4.519337e-02	ci left: 4.357560e-03	ci right 4.559630e-03	k: 7489	n:1680000
Cons ci ratio: 1.152544e-01	ci left: 6.484305e-04	ci right 7.283070e-04	k: 1155	n:1680000
KS ci ratio: 4.602446e-03	ci left: 3.008852e-01	ci right 3.022738e-01	k: 506653	n:1680000
ECM1   1680000 perm   1396 sec   (1203 perm/sec)   p_kst 3.015792e-01   p_cons 6.875000e-04   p_joint 4.457738e-03

Joint ci ratio: 4.508226e-02	ci left: 4.353422e-03	ci right 4.554791e-03	k: 7526	n:1690000
Cons ci ratio: 1.148083e-01	ci left: 6.497658e-04	ci right 7.294761e-04	k: 1164	n:1690000
KS ci ratio: 4.588814e-03	ci left: 3.008868e-01	ci right 3.022713e-01	k: 509668	n:1690000
ECM1   1690000 perm   1411 sec   (1198 perm/sec)   p_kst 3.015787e-01   p_cons 6.887574e-04   p_joint 4.453254e-03

Joint ci ratio: 4.496898e-02	ci left: 4.349915e-03	ci right 4.550602e-03	k: 7564	n:1700000
Cons ci ratio: 1.143186e-01	ci left: 6.516575e-04	ci right 7.312359e-04	k: 1174	n:1700000
KS ci ratio: 4.575629e-03	ci left: 3.008584e-01	ci right 3.022387e-01	k: 512632	n:1700000
ECM1   1700000 perm   1425 sec   (1193 perm/sec)   p_kst 3.015482e-01   p_cons 6.905882e-04   p_joint 4.449412e-03

Joint ci ratio: 4.485062e-02	ci left: 4.347606e-03	ci right 4.547645e-03	k: 7604	n:1710000
Cons ci ratio: 1.139314e-01	ci left: 6.523915e-04	ci right 7.317715e-04	k: 1182	n:1710000
KS ci ratio: 4.562423e-03	ci left: 3.008426e-01	ci right 3.022189e-01	k: 515617	n:1710000
ECM1   1710000 perm   1440 sec   (1188 perm/sec)   p_kst 3.015304e-01   p_cons 6.912281e-04   p_joint 4.446784e-03

Joint ci ratio: 4.472144e-02	ci left: 4.347624e-03	ci right 4.547073e-03	k: 7648	n:1720000
Cons ci ratio: 1.135958e-01	ci left: 6.525525e-04	ci right 7.317025e-04	k: 1189	n:1720000
KS ci ratio: 4.549087e-03	ci left: 3.008497e-01	ci right 3.022219e-01	k: 518641	n:1720000
ECM1   1720000 perm   1454 sec   (1183 perm/sec)   p_kst 3.015355e-01   p_cons 6.912791e-04   p_joint 4.446512e-03

Joint ci ratio: 4.458464e-02	ci left: 4.349358e-03	ci right 4.548261e-03	k: 7695	n:1730000
Cons ci ratio: 1.130272e-01	ci left: 6.555204e-04	ci right 7.346059e-04	k: 1201	n:1730000
KS ci ratio: 4.536227e-03	ci left: 3.008231e-01	ci right 3.021914e-01	k: 521607	n:1730000
ECM1   1730000 perm   1469 sec   (1178 perm/sec)   p_kst 3.015069e-01   p_cons 6.942197e-04   p_joint 4.447977e-03

Joint ci ratio: 4.444332e-02	ci left: 4.352209e-03	ci right 4.550595e-03	k: 7744	n:1740000
Cons ci ratio: 1.126529e-01	ci left: 6.562210e-04	ci right 7.351114e-04	k: 1209	n:1740000
KS ci ratio: 4.522896e-03	ci left: 3.008509e-01	ci right 3.022153e-01	k: 524667	n:1740000
ECM1   1740000 perm   1484 sec   (1173 perm/sec)   p_kst 3.015328e-01   p_cons 6.948276e-04   p_joint 4.450575e-03

Joint ci ratio: 4.579062e-02	ci left: 4.074778e-03	ci right 4.266297e-03	k: 7297	n:1750000
Cons ci ratio: 1.123746e-01	ci left: 6.558032e-04	ci right 7.344358e-04	k: 1215	n:1750000
KS ci ratio: 4.509761e-03	ci left: 3.008710e-01	ci right 3.022314e-01	k: 527714	n:1750000
ECM1   1750000 perm   1499 sec   (1167 perm/sec)   p_kst 3.015509e-01   p_cons 6.942857e-04   p_joint 4.169714e-03

Joint ci ratio: 4.567192e-02	ci left: 4.072970e-03	ci right 4.263895e-03	k: 7335	n:1760000
Cons ci ratio: 1.120984e-01	ci left: 6.553904e-04	ci right 7.337676e-04	k: 1221	n:1760000
KS ci ratio: 4.497056e-03	ci left: 3.008612e-01	ci right 3.022178e-01	k: 530709	n:1760000
ECM1   1760000 perm   1514 sec   (1162 perm/sec)   p_kst 3.015392e-01   p_cons 6.937500e-04   p_joint 4.167614e-03

Joint ci ratio: 4.554794e-02	ci left: 4.072300e-03	ci right 4.262661e-03	k: 7375	n:1770000
Cons ci ratio: 1.117787e-01	ci left: 6.555317e-04	ci right 7.336875e-04	k: 1228	n:1770000
KS ci ratio: 4.484643e-03	ci left: 3.008341e-01	ci right 3.021868e-01	k: 533673	n:1770000
ECM1   1770000 perm   1529 sec   (1157 perm/sec)   p_kst 3.015102e-01   p_cons 6.937853e-04   p_joint 4.166667e-03

Joint ci ratio: 4.565737e-02	ci left: 4.029981e-03	ci right 4.218829e-03	k: 7340	n:1780000
Cons ci ratio: 1.115521e-01	ci left: 6.545795e-04	ci right 7.324531e-04	k: 1233	n:1780000
KS ci ratio: 4.472303e-03	ci left: 3.008102e-01	ci right 3.021590e-01	k: 536642	n:1780000
ECM1   1780000 perm   1544 sec   (1152 perm/sec)   p_kst 3.014843e-01   p_cons 6.926966e-04   p_joint 4.123596e-03

Joint ci ratio: 4.635742e-02	ci left: 3.886522e-03	ci right 4.071514e-03	k: 7121	n:1790000
Cons ci ratio: 1.111027e-01	ci left: 6.563537e-04	ci right 7.341032e-04	k: 1243	n:1790000
KS ci ratio: 4.459721e-03	ci left: 3.008188e-01	ci right 3.021639e-01	k: 539669	n:1790000
ECM1   1790000 perm   1560 sec   (1148 perm/sec)   p_kst 3.014911e-01   p_cons 6.944134e-04   p_joint 3.978212e-03

Joint ci ratio: 4.748917e-02	ci left: 3.681542e-03	ci right 3.861172e-03	k: 6787	n:1800000
Cons ci ratio: 1.106588e-01	ci left: 6.581088e-04	ci right 7.357344e-04	k: 1253	n:1800000
KS ci ratio: 4.447081e-03	ci left: 3.008430e-01	ci right 3.021843e-01	k: 542724	n:1800000
ECM1   1800000 perm   1575 sec   (1143 perm/sec)   p_kst 3.015133e-01   p_cons 6.961111e-04   p_joint 3.770556e-03

Joint ci ratio: 4.816014e-02	ci left: 3.559117e-03	ci right 3.735295e-03	k: 6600	n:1810000
Cons ci ratio: 1.103950e-01	ci left: 6.576961e-04	ci right 7.350761e-04	k: 1259	n:1810000
KS ci ratio: 4.434605e-03	ci left: 3.008613e-01	ci right 3.021990e-01	k: 545769	n:1810000
ECM1   1810000 perm   1590 sec   (1138 perm/sec)   p_kst 3.015298e-01   p_cons 6.955801e-04   p_joint 3.646409e-03

Joint ci ratio: 4.803662e-02	ci left: 3.558018e-03	ci right 3.733677e-03	k: 6634	n:1820000
Cons ci ratio: 1.101331e-01	ci left: 6.572882e-04	ci right 7.344248e-04	k: 1265	n:1820000
KS ci ratio: 4.422263e-03	ci left: 3.008767e-01	ci right 3.022107e-01	k: 548809	n:1820000
ECM1   1820000 perm   1606 sec   (1134 perm/sec)   p_kst 3.015434e-01   p_cons 6.950549e-04   p_joint 3.645055e-03

Joint ci ratio: 4.789242e-02	ci left: 3.560171e-03	ci right 3.735395e-03	k: 6674	n:1830000
Cons ci ratio: 1.099164e-01	ci left: 6.563535e-04	ci right 7.332190e-04	k: 1270	n:1830000
KS ci ratio: 4.409749e-03	ci left: 3.009182e-01	ci right 3.022486e-01	k: 551897	n:1830000
ECM1   1830000 perm   1621 sec   (1129 perm/sec)   p_kst 3.015831e-01   p_cons 6.939891e-04   p_joint 3.646995e-03

Joint ci ratio: 4.779240e-02	ci left: 3.555857e-03	ci right 3.730493e-03	k: 6702	n:1840000
Cons ci ratio: 1.097008e-01	ci left: 6.554291e-04	ci right 7.320261e-04	k: 1275	n:1840000
KS ci ratio: 4.397896e-03	ci left: 3.009059e-01	ci right 3.022327e-01	k: 554887	n:1840000
ECM1   1840000 perm   1636 sec   (1125 perm/sec)   p_kst 3.015690e-01   p_cons 6.929348e-04   p_joint 3.642391e-03

Joint ci ratio: 4.304309e-02	ci left: 4.367160e-03	ci right 4.559801e-03	k: 8256	n:1850000
Cons ci ratio: 1.093159e-01	ci left: 6.566179e-04	ci right 7.330673e-04	k: 1284	n:1850000
KS ci ratio: 4.385930e-03	ci left: 3.009138e-01	ci right 3.022370e-01	k: 557914	n:1850000
ECM1   1850000 perm   1651 sec   (1120 perm/sec)   p_kst 3.015751e-01   p_cons 6.940541e-04   p_joint 4.462703e-03

Joint ci ratio: 4.311184e-02	ci left: 4.329851e-03	ci right 4.521159e-03	k: 8230	n:1860000
Cons ci ratio: 1.090616e-01	ci left: 6.562254e-04	ci right 7.324399e-04	k: 1290	n:1860000
KS ci ratio: 4.374246e-03	ci left: 3.009039e-01	ci right 3.022236e-01	k: 560908	n:1860000
ECM1   1860000 perm   1667 sec   (1116 perm/sec)   p_kst 3.015634e-01   p_cons 6.935484e-04   p_joint 4.424731e-03

Joint ci ratio: 4.546956e-02	ci left: 3.868795e-03	ci right 4.049324e-03	k: 7402	n:1870000
Cons ci ratio: 1.086834e-01	ci left: 6.573979e-04	ci right 7.334670e-04	k: 1299	n:1870000
KS ci ratio: 4.362743e-03	ci left: 3.008856e-01	ci right 3.022017e-01	k: 563886	n:1870000
ECM1   1870000 perm   1682 sec   (1112 perm/sec)   p_kst 3.015433e-01   p_cons 6.946524e-04   p_joint 3.958289e-03

Joint ci ratio: 4.607056e-02	ci left: 3.747778e-03	ci right 3.925033e-03	k: 7211	n:1880000
Cons ci ratio: 1.083505e-01	ci left: 6.580410e-04	ci right 7.339363e-04	k: 1307	n:1880000
KS ci ratio: 4.351313e-03	ci left: 3.008690e-01	ci right 3.021816e-01	k: 566867	n:1880000
ECM1   1880000 perm   1698 sec   (1107 perm/sec)   p_kst 3.015250e-01   p_cons 6.952128e-04   p_joint 3.835638e-03

Joint ci ratio: 4.597195e-02	ci left: 3.744162e-03	ci right 3.920856e-03	k: 7242	n:1890000
Cons ci ratio: 1.081853e-01	ci left: 6.566183e-04	ci right 7.322268e-04	k: 1311	n:1890000
KS ci ratio: 4.339853e-03	ci left: 3.008643e-01	ci right 3.021733e-01	k: 569870	n:1890000
ECM1   1890000 perm   1713 sec   (1103 perm/sec)   p_kst 3.015185e-01   p_cons 6.936508e-04   p_joint 3.831746e-03

Joint ci ratio: 4.491998e-02	ci left: 3.902417e-03	ci right 4.082258e-03	k: 7584	n:1900000
Cons ci ratio: 1.080619e-01	ci left: 6.546987e-04	ci right 7.299946e-04	k: 1314	n:1900000
KS ci ratio: 4.328749e-03	ci left: 3.008338e-01	ci right 3.021394e-01	k: 572824	n:1900000
ECM1   1900000 perm   1729 sec   (1099 perm/sec)   p_kst 3.014863e-01   p_cons 6.915789e-04   p_joint 3.991579e-03

Joint ci ratio: 4.483448e-02	ci left: 3.896998e-03	ci right 4.076238e-03	k: 7613	n:1910000
Cons ci ratio: 1.078980e-01	ci left: 6.533086e-04	ci right 7.283234e-04	k: 1318	n:1910000
KS ci ratio: 4.317594e-03	ci left: 3.008168e-01	ci right 3.021189e-01	k: 575803	n:1910000
ECM1   1910000 perm   1745 sec   (1094 perm/sec)   p_kst 3.014675e-01   p_cons 6.900524e-04   p_joint 3.985864e-03

Joint ci ratio: 4.470838e-02	ci left: 3.898847e-03	ci right 4.077654e-03	k: 7656	n:1920000
Cons ci ratio: 1.076129e-01	ci left: 6.534535e-04	ci right 7.282741e-04	k: 1325	n:1920000
KS ci ratio: 4.306281e-03	ci left: 3.008239e-01	ci right 3.021226e-01	k: 578828	n:1920000
ECM1   1920000 perm   1761 sec   (1090 perm/sec)   p_kst 3.014729e-01   p_cons 6.901042e-04   p_joint 3.987500e-03

Joint ci ratio: 4.618225e-02	ci left: 3.633267e-03	ci right 3.805533e-03	k: 7177	n:1930000
Cons ci ratio: 1.071691e-01	ci left: 6.556142e-04	ci right 7.303532e-04	k: 1336	n:1930000
KS ci ratio: 4.295194e-03	ci left: 3.008174e-01	ci right 3.021127e-01	k: 581827	n:1930000
ECM1   1930000 perm   1778 sec   (1086 perm/sec)   p_kst 3.014648e-01   p_cons 6.922280e-04   p_joint 3.718653e-03

Joint ci ratio: 4.608292e-02	ci left: 3.630334e-03	ci right 3.802081e-03	k: 7208	n:1940000
Cons ci ratio: 1.066913e-01	ci left: 6.582549e-04	ci right 7.329393e-04	k: 1348	n:1940000
KS ci ratio: 4.284212e-03	ci left: 3.008089e-01	ci right 3.021009e-01	k: 584822	n:1940000
ECM1   1940000 perm   1794 sec   (1081 perm/sec)   p_kst 3.014546e-01   p_cons 6.948454e-04   p_joint 3.715464e-03

Joint ci ratio: 4.596512e-02	ci left: 3.630472e-03	ci right 3.801776e-03	k: 7245	n:1950000
Cons ci ratio: 1.064548e-01	ci left: 6.578741e-04	ci right 7.323396e-04	k: 1354	n:1950000
KS ci ratio: 4.272893e-03	ci left: 3.008421e-01	ci right 3.021308e-01	k: 587898	n:1950000
ECM1   1950000 perm   1810 sec   (1078 perm/sec)   p_kst 3.014862e-01   p_cons 6.943590e-04   p_joint 3.715385e-03

Joint ci ratio: 4.200623e-02	ci left: 4.330537e-03	ci right 4.516850e-03	k: 8669	n:1960000
Cons ci ratio: 1.061419e-01	ci left: 6.584908e-04	ci right 7.327933e-04	k: 1362	n:1960000
KS ci ratio: 4.261793e-03	ci left: 3.008622e-01	ci right 3.021476e-01	k: 590949	n:1960000
ECM1   1960000 perm   1826 sec   (1073 perm/sec)   p_kst 3.015046e-01   p_cons 6.948980e-04   p_joint 4.422959e-03

Joint ci ratio: 4.189281e-02	ci left: 4.332163e-03	ci right 4.518030e-03	k: 8716	n:1970000
Cons ci ratio: 1.059091e-01	ci left: 6.581131e-04	ci right 7.321999e-04	k: 1368	n:1970000
KS ci ratio: 4.250742e-03	ci left: 3.008856e-01	ci right 3.021678e-01	k: 594007	n:1970000
ECM1   1970000 perm   1843 sec   (1069 perm/sec)   p_kst 3.015264e-01   p_cons 6.944162e-04   p_joint 4.424365e-03

Joint ci ratio: 4.178508e-02	ci left: 4.332773e-03	ci right 4.518177e-03	k: 8761	n:1980000
Cons ci ratio: 1.055626e-01	ci left: 6.592146e-04	ci right 7.331675e-04	k: 1377	n:1980000
KS ci ratio: 4.240041e-03	ci left: 3.008825e-01	ci right 3.021615e-01	k: 597013	n:1980000
ECM1   1980000 perm   1859 sec   (1065 perm/sec)   p_kst 3.015217e-01   p_cons 6.954545e-04   p_joint 4.424747e-03

Joint ci ratio: 4.169008e-02	ci left: 4.330890e-03	ci right 4.515782e-03	k: 8801	n:1990000
Cons ci ratio: 1.052575e-01	ci left: 6.598160e-04	ci right 7.336093e-04	k: 1385	n:1990000
KS ci ratio: 4.229320e-03	ci left: 3.008896e-01	ci right 3.021653e-01	k: 600039	n:1990000
ECM1   1990000 perm   1876 sec   (1061 perm/sec)   p_kst 3.015271e-01   p_cons 6.959799e-04   p_joint 4.422613e-03

Joint ci ratio: 4.158863e-02	ci left: 4.330512e-03	ci right 4.514927e-03	k: 8844	n:2000000
Cons ci ratio: 1.049927e-01	ci left: 6.599249e-04	ci right 7.335333e-04	k: 1392	n:2000000
KS ci ratio: 4.218400e-03	ci left: 3.009245e-01	ci right 3.021971e-01	k: 603121	n:2000000
ECM1   2000000 perm   1893 sec   (1057 perm/sec)   p_kst 3.015605e-01   p_cons 6.960000e-04   p_joint 4.422000e-03

Joint ci ratio: 4.151138e-02	ci left: 4.325214e-03	ci right 4.509054e-03	k: 8877	n:2010000
Cons ci ratio: 1.047673e-01	ci left: 6.595485e-04	ci right 7.329472e-04	k: 1398	n:2010000
KS ci ratio: 4.208517e-03	ci left: 3.008636e-01	ci right 3.021330e-01	k: 606011	n:2010000
ECM1   2010000 perm   1909 sec   (1053 perm/sec)   p_kst 3.014980e-01   p_cons 6.955224e-04   p_joint 4.416418e-03

Joint ci ratio: 4.142989e-02	ci left: 4.320949e-03	ci right 4.504238e-03	k: 8912	n:2020000
Cons ci ratio: 1.044319e-01	ci left: 6.606223e-04	ci right 7.338907e-04	k: 1407	n:2020000
KS ci ratio: 4.197944e-03	ci left: 3.008796e-01	ci right 3.021458e-01	k: 609055	n:2020000
ECM1   2020000 perm   1926 sec   (1049 perm/sec)   p_kst 3.015124e-01   p_cons 6.965347e-04   p_joint 4.411881e-03

Joint ci ratio: 4.134191e-02	ci left: 4.318189e-03	ci right 4.500963e-03	k: 8950	n:2030000
Cons ci ratio: 1.042840e-01	ci left: 6.592870e-04	ci right 7.322973e-04	k: 1411	n:2030000
KS ci ratio: 4.187484e-03	ci left: 3.008919e-01	ci right 3.021550e-01	k: 612092	n:2030000
ECM1   2030000 perm   1944 sec   (1044 perm/sec)   p_kst 3.015232e-01   p_cons 6.950739e-04   p_joint 4.408867e-03

Joint ci ratio: 4.122687e-02	ci left: 4.321279e-03	ci right 4.503662e-03	k: 9000	n:2040000
Cons ci ratio: 1.038435e-01	ci left: 6.617845e-04	ci right 7.347430e-04	k: 1423	n:2040000
KS ci ratio: 4.176971e-03	ci left: 3.009173e-01	ci right 3.021774e-01	k: 615156	n:2040000
ECM1   2040000 perm   1960 sec   (1041 perm/sec)   p_kst 3.015471e-01   p_cons 6.975490e-04   p_joint 4.411765e-03

Joint ci ratio: 4.111278e-02	ci left: 4.324339e-03	ci right 4.506334e-03	k: 9050	n:2050000
Cons ci ratio: 1.036617e-01	ci left: 6.609320e-04	ci right 7.336612e-04	k: 1428	n:2050000
KS ci ratio: 4.166928e-03	ci left: 3.009030e-01	ci right 3.021600e-01	k: 618139	n:2050000
ECM1   2050000 perm   1977 sec   (1037 perm/sec)   p_kst 3.015312e-01   p_cons 6.965854e-04   p_joint 4.414634e-03

Joint ci ratio: 4.102454e-02	ci left: 4.322084e-03	ci right 4.503585e-03	k: 9089	n:2060000
Cons ci ratio: 1.033008e-01	ci left: 6.624524e-04	ci right 7.350797e-04	k: 1438	n:2060000
KS ci ratio: 4.157239e-03	ci left: 3.008603e-01	ci right 3.021141e-01	k: 621063	n:2060000
ECM1   2060000 perm   1995 sec   (1033 perm/sec)   p_kst 3.014869e-01   p_cons 6.980583e-04   p_joint 4.412136e-03

Joint ci ratio: 4.093912e-02	ci left: 4.319374e-03	ci right 4.500374e-03	k: 9127	n:2070000
Cons ci ratio: 1.029437e-01	ci left: 6.639585e-04	ci right 7.364840e-04	k: 1448	n:2070000
KS ci ratio: 4.146871e-03	ci left: 3.008937e-01	ci right 3.021445e-01	k: 624144	n:2070000
ECM1   2070000 perm   2012 sec   (1029 perm/sec)   p_kst 3.015188e-01   p_cons 6.995169e-04   p_joint 4.409179e-03

Joint ci ratio: 4.219035e-02	ci left: 4.045959e-03	ci right 4.220810e-03	k: 8596	n:2080000
Cons ci ratio: 1.027312e-01	ci left: 6.635768e-04	ci right 7.359020e-04	k: 1454	n:2080000
KS ci ratio: 4.136523e-03	ci left: 3.009326e-01	ci right 3.021805e-01	k: 627237	n:2080000
ECM1   2080000 perm   2029 sec   (1025 perm/sec)   p_kst 3.015563e-01   p_cons 6.990385e-04   p_joint 4.132692e-03

Joint ci ratio: 4.036009e-02	ci left: 4.402602e-03	ci right 4.584421e-03	k: 9390	n:2090000
Cons ci ratio: 1.025552e-01	ci left: 6.627327e-04	ci right 7.348347e-04	k: 1459	n:2090000
KS ci ratio: 4.126585e-03	ci left: 3.009372e-01	ci right 3.021820e-01	k: 630259	n:2090000
ECM1   2090000 perm   2046 sec   (1021 perm/sec)   p_kst 3.015593e-01   p_cons 6.980861e-04   p_joint 4.492823e-03

Joint ci ratio: 3.981068e-02	ci left: 4.504211e-03	ci right 4.687636e-03	k: 9650	n:2100000
Cons ci ratio: 1.022405e-01	ci left: 6.637528e-04	ci right 7.357309e-04	k: 1468	n:2100000
KS ci ratio: 4.116872e-03	ci left: 3.009260e-01	ci right 3.021679e-01	k: 633248	n:2100000
ECM1   2100000 perm   2063 sec   (1018 perm/sec)   p_kst 3.015467e-01   p_cons 6.990476e-04   p_joint 4.595238e-03

Joint ci ratio: 3.971202e-02	ci left: 4.505387e-03	ci right 4.688394e-03	k: 9698	n:2110000
Cons ci ratio: 1.019978e-01	ci left: 6.638398e-04	ci right 7.356462e-04	k: 1475	n:2110000
KS ci ratio: 4.106880e-03	ci left: 3.009505e-01	ci right 3.021894e-01	k: 636312	n:2110000
ECM1   2110000 perm   2081 sec   (1014 perm/sec)   p_kst 3.015697e-01   p_cons 6.990521e-04   p_joint 4.596209e-03

Joint ci ratio: 3.956316e-02	ci left: 4.518228e-03	ci right 4.701054e-03	k: 9771	n:2120000
Cons ci ratio: 1.017225e-01	ci left: 6.643860e-04	ci right 7.360459e-04	k: 1483	n:2120000
KS ci ratio: 4.097305e-03	ci left: 3.009393e-01	ci right 3.021754e-01	k: 639301	n:2120000
ECM1   2120000 perm   2099 sec   (1010 perm/sec)   p_kst 3.015571e-01   p_cons 6.995283e-04   p_joint 4.608962e-03

Joint ci ratio: 3.947845e-02	ci left: 4.516539e-03	ci right 4.698896e-03	k: 9813	n:2130000
Cons ci ratio: 1.014834e-01	ci left: 6.644697e-04	ci right 7.359601e-04	k: 1490	n:2130000
KS ci ratio: 4.087524e-03	ci left: 3.009565e-01	ci right 3.021896e-01	k: 642350	n:2130000
ECM1   2130000 perm   2116 sec   (1007 perm/sec)   p_kst 3.015728e-01   p_cons 6.995305e-04   p_joint 4.607042e-03

Joint ci ratio: 3.940031e-02	ci left: 4.513478e-03	ci right 4.695343e-03	k: 9852	n:2140000
Cons ci ratio: 1.013476e-01	ci left: 6.631864e-04	ci right 7.344377e-04	k: 1494	n:2140000
KS ci ratio: 4.077848e-03	ci left: 3.009697e-01	ci right 3.022000e-01	k: 645391	n:2140000
ECM1   2140000 perm   2133 sec   (1003 perm/sec)   p_kst 3.015846e-01   p_cons 6.981308e-04   p_joint 4.603738e-03

Joint ci ratio: 3.932263e-02	ci left: 4.510446e-03	ci right 4.691822e-03	k: 9891	n:2150000
Cons ci ratio: 1.010775e-01	ci left: 6.637286e-04	ci right 7.348367e-04	k: 1502	n:2150000
KS ci ratio: 4.068407e-03	ci left: 3.009656e-01	ci right 3.021930e-01	k: 648395	n:2150000
ECM1   2150000 perm   2151 sec   (1000 perm/sec)   p_kst 3.015791e-01   p_cons 6.986047e-04   p_joint 4.600465e-03

Joint ci ratio: 3.922160e-02	ci left: 4.512944e-03	ci right 4.693944e-03	k: 9942	n:2160000
Cons ci ratio: 1.009099e-01	ci left: 6.629121e-04	ci right 7.338080e-04	k: 1507	n:2160000
KS ci ratio: 4.058968e-03	ci left: 3.009681e-01	ci right 3.021926e-01	k: 651413	n:2160000
ECM1   2160000 perm   2169 sec   (996 perm/sec)   p_kst 3.015801e-01   p_cons 6.976852e-04   p_joint 4.602778e-03

Joint ci ratio: 3.914497e-02	ci left: 4.509943e-03	ci right 4.690461e-03	k: 9981	n:2170000
Cons ci ratio: 1.006432e-01	ci left: 6.634509e-04	ci right 7.342059e-04	k: 1515	n:2170000
KS ci ratio: 4.049440e-03	ci left: 3.009866e-01	ci right 3.022084e-01	k: 654466	n:2170000
ECM1   2170000 perm   2187 sec   (992 perm/sec)   p_kst 3.015972e-01   p_cons 6.981567e-04   p_joint 4.599539e-03

Joint ci ratio: 3.901992e-02	ci left: 4.518327e-03	ci right 4.698590e-03	k: 10045	n:2180000
Cons ci ratio: 1.002800e-01	ci left: 6.653267e-04	ci right 7.360106e-04	k: 1526	n:2180000
KS ci ratio: 4.040124e-03	ci left: 3.009899e-01	ci right 3.022088e-01	k: 657486	n:2180000
ECM1   2180000 perm   2206 sec   (988 perm/sec)   p_kst 3.015991e-01   p_cons 7.000000e-04   p_joint 4.607798e-03

Joint ci ratio: 3.866430e-02	ci left: 4.581352e-03	ci right 4.762427e-03	k: 10230	n:2190000
Cons ci ratio: 9.995317e-02	ci left: 6.667406e-04	ci right 7.373303e-04	k: 1536	n:2190000
KS ci ratio: 4.030566e-03	ci left: 3.010250e-01	ci right 3.022412e-01	k: 660576	n:2190000
ECM1   2190000 perm   2223 sec   (985 perm/sec)   p_kst 3.016329e-01   p_cons 7.013699e-04   p_joint 4.671233e-03

Outputting figure to mutsig2_images.part000000000054/ECM1.4_1663_2190000_0.30163_0.00070137_0.0046712.png
                gene_name: ECM1
               theta_stop: 0.100 
                    nperm: 2190000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.00070 
      ci_cons_bounds_left: 0.00067 
     ci_cons_bounds_right: 0.00074 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0048 

Current progress: 43 percent done.
ECT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661754e-02	ci left: 8.405065e-01	ci right 8.546904e-01	k: 8477	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 1.669465e-02	ci left: 8.392842e-01	ci right 8.535134e-01	k: 8465	n:10000
ECT2   10000 perm   2 sec   (5764 perm/sec)   p_kst 8.465000e-01   p_cons 2.824000e-01   p_joint 8.477000e-01

Outputting figure to mutsig2_images.part000000000054/ECT2.4_2744_10000_0.8465_0.2824_0.8477.png
                gene_name: ECT2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
EED
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
KS ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
EED   10000 perm   2 sec   (6374 perm/sec)   p_kst 6.202000e-01   p_cons 4.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EED.4_1378_10000_0.6202_0.4574_1.png
                gene_name: EED
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
EEF1B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
EEF1B2   10000 perm   2 sec   (6352 perm/sec)   p_kst 4.630000e-02   p_cons 9.775000e-01   p_joint 7.710000e-02

Joint ci ratio: 6.915897e-02	ci left: 1.335927e-01	ci right 1.432126e-01	k: 2767	n:20000
Cons ci ratio: 4.034397e-03	ci left: 9.772307e-01	ci right 9.812283e-01	k: 19586	n:20000
KS ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
EEF1B2   20000 perm   4 sec   (5669 perm/sec)   p_kst 4.520000e-02   p_cons 9.793000e-01   p_joint 1.383500e-01

Joint ci ratio: 6.927655e-02	ci left: 9.308278e-02	ci right 9.979561e-02	k: 2892	n:30000
Cons ci ratio: 3.235638e-03	ci left: 9.783518e-01	ci right 9.815543e-01	k: 29400	n:30000
KS ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
EEF1B2   30000 perm   6 sec   (5404 perm/sec)   p_kst 4.343333e-02   p_cons 9.800000e-01   p_joint 9.640000e-02

Joint ci ratio: 6.660198e-02	ci left: 7.703939e-02	ci right 8.237181e-02	k: 3187	n:40000
Cons ci ratio: 2.771118e-03	ci left: 9.790195e-01	ci right 9.817602e-01	k: 39217	n:40000
KS ci ratio: 9.179683e-02	ci left: 4.159509e-02	ci right 4.562151e-02	k: 1743	n:40000
EEF1B2   40000 perm   8 sec   (5228 perm/sec)   p_kst 4.357500e-02   p_cons 9.804250e-01   p_joint 7.967500e-02

Outputting figure to mutsig2_images.part000000000054/EEF1B2.4_702_40000_0.043575_0.98042_0.079675.png
                gene_name: EEF1B2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 49 percent done.
DYRK1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
DYRK1A   10000 perm   2 sec   (5776 perm/sec)   p_kst 8.178000e-01   p_cons 5.700000e-02   p_joint 4.417000e-01

Joint ci ratio: 4.031834e-02	ci left: 3.144317e-01	ci right 3.274204e-01	k: 6418	n:20000
Cons ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
KS ci ratio: 1.321535e-02	ci left: 8.093457e-01	ci right 8.201626e-01	k: 16296	n:20000
DYRK1A   20000 perm   4 sec   (5112 perm/sec)   p_kst 8.148000e-01   p_cons 5.515000e-02   p_joint 3.209000e-01

Joint ci ratio: 1.811482e-02	ci left: 6.039524e-01	ci right 6.150264e-01	k: 18285	n:30000
Cons ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
KS ci ratio: 1.077946e-02	ci left: 8.106599e-01	ci right 8.194790e-01	k: 24453	n:30000
DYRK1A   30000 perm   6 sec   (4852 perm/sec)   p_kst 8.151000e-01   p_cons 5.730000e-02   p_joint 6.095000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK1A.3_2420_30000_0.8151_0.0573_0.6095.png
                gene_name: DYRK1A
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 51 percent done.
DYRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
Cons ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
KS ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
DYRK3   10000 perm   2 sec   (6647 perm/sec)   p_kst 2.434000e-01   p_cons 1.834000e-01   p_joint 3.234000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK3.3_1800_10000_0.2434_0.1834_0.3234.png
                gene_name: DYRK3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 53 percent done.
DYRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
KS ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
DYRK4   10000 perm   2 sec   (6325 perm/sec)   p_kst 9.655000e-01   p_cons 9.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/DYRK4.3_1607_10000_0.9655_0.9082_1.png
                gene_name: DYRK4
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
E2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
Cons ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
KS ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
E2F1   10000 perm   2 sec   (6038 perm/sec)   p_kst 3.493000e-01   p_cons 5.884000e-01   p_joint 5.443000e-01

Outputting figure to mutsig2_images.part000000000054/E2F1.3_1342_10000_0.3493_0.5884_0.5443.png
                gene_name: E2F1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 57 percent done.
E2F6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
Cons ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
KS ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
E2F6   10000 perm   2 sec   (6660 perm/sec)   p_kst 3.880000e-02   p_cons 2.300000e-03   p_joint 1.900000e-03

Joint ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
Cons ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
KS ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
E2F6   20000 perm   3 sec   (5816 perm/sec)   p_kst 3.615000e-02   p_cons 2.300000e-03   p_joint 2.750000e-03

Joint ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
Cons ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
KS ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
E2F6   30000 perm   5 sec   (5540 perm/sec)   p_kst 3.633333e-02   p_cons 2.566667e-03   p_joint 1.700000e-03

Joint ci ratio: 2.423137e-01	ci left: 5.712489e-03	ci right 7.310422e-03	k: 259	n:40000
Cons ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
KS ci ratio: 1.013504e-01	ci left: 3.422003e-02	ci right 3.789772e-02	k: 1441	n:40000
E2F6   40000 perm   7 sec   (5334 perm/sec)   p_kst 3.602500e-02   p_cons 3.200000e-03   p_joint 6.475000e-03

Joint ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 9.035222e-02	ci left: 3.463843e-02	ci right 3.793569e-02	k: 1813	n:50000
E2F6   50000 perm   10 sec   (5172 perm/sec)   p_kst 3.626000e-02   p_cons 3.100000e-03   p_joint 1.100000e-02

Joint ci ratio: 1.520929e-01	ci left: 1.011665e-02	ci right 1.179782e-02	k: 656	n:60000
Cons ci ratio: 2.869801e-01	ci left: 2.655564e-03	ci right 3.560224e-03	k: 185	n:60000
KS ci ratio: 8.309195e-02	ci left: 3.427855e-02	ci right 3.726658e-02	k: 2145	n:60000
E2F6   60000 perm   12 sec   (5037 perm/sec)   p_kst 3.575000e-02   p_cons 3.083333e-03   p_joint 1.093333e-02

Joint ci ratio: 1.871471e-01	ci left: 5.645528e-03	ci right 6.824536e-03	k: 435	n:70000
Cons ci ratio: 2.675539e-01	ci left: 2.648417e-03	ci right 3.479337e-03	k: 213	n:70000
KS ci ratio: 7.689113e-02	ci left: 3.442177e-02	ci right 3.718831e-02	k: 2505	n:70000
E2F6   70000 perm   14 sec   (4922 perm/sec)   p_kst 3.578571e-02   p_cons 3.042857e-03   p_joint 6.214286e-03

Joint ci ratio: 7.277892e-01	ci left: 2.325847e-04	ci right 5.058080e-04	k: 28	n:80000
Cons ci ratio: 2.977078e-01	ci left: 1.840963e-03	ci right 2.495980e-03	k: 172	n:80000
KS ci ratio: 7.130767e-02	ci left: 3.510052e-02	ci right 3.770824e-02	k: 2911	n:80000
E2F6   80000 perm   17 sec   (4817 perm/sec)   p_kst 3.638750e-02   p_cons 2.150000e-03   p_joint 3.500000e-04

Joint ci ratio: 3.841633e-01	ci left: 9.342257e-04	ci right 1.387803e-03	k: 103	n:90000
Cons ci ratio: 2.811346e-01	ci left: 1.852821e-03	ci right 2.468861e-03	k: 193	n:90000
KS ci ratio: 6.745425e-02	ci left: 3.494537e-02	ci right 3.739576e-02	k: 3254	n:90000
E2F6   90000 perm   19 sec   (4719 perm/sec)   p_kst 3.615556e-02   p_cons 2.144444e-03   p_joint 1.144444e-03

Joint ci ratio: 3.805403e-01	ci left: 8.588738e-04	ci right 1.270948e-03	k: 105	n:100000
Cons ci ratio: 2.708672e-01	ci left: 1.807155e-03	ci right 2.382337e-03	k: 208	n:100000
KS ci ratio: 6.419251e-02	ci left: 3.479479e-02	ci right 3.711223e-02	k: 3594	n:100000
E2F6   100000 perm   22 sec   (4627 perm/sec)   p_kst 3.594000e-02   p_cons 2.080000e-03   p_joint 1.050000e-03

Joint ci ratio: 3.532552e-01	ci left: 9.211154e-04	ci right 1.324114e-03	k: 122	n:110000
Cons ci ratio: 2.548952e-01	ci left: 1.872170e-03	ci right 2.427330e-03	k: 235	n:110000
KS ci ratio: 6.109709e-02	ci left: 3.496952e-02	ci right 3.718230e-02	k: 3967	n:110000
E2F6   110000 perm   24 sec   (4542 perm/sec)   p_kst 3.606364e-02   p_cons 2.136364e-03   p_joint 1.109091e-03

Joint ci ratio: 5.017749e-01	ci left: 3.815737e-04	ci right 6.435529e-04	k: 60	n:120000
Cons ci ratio: 2.414515e-01	ci left: 1.927178e-03	ci right 2.464000e-03	k: 262	n:120000
KS ci ratio: 5.852218e-02	ci left: 3.498591e-02	ci right 3.710326e-02	k: 4324	n:120000
E2F6   120000 perm   27 sec   (4433 perm/sec)   p_kst 3.603333e-02   p_cons 2.183333e-03   p_joint 5.000000e-04

Joint ci ratio: 5.778680e-01	ci left: 2.524978e-04	ci right 4.631540e-04	k: 45	n:130000
Cons ci ratio: 2.327652e-01	ci left: 1.923643e-03	ci right 2.437429e-03	k: 282	n:130000
KS ci ratio: 5.624758e-02	ci left: 3.500144e-02	ci right 3.703471e-02	k: 4681	n:130000
E2F6   130000 perm   30 sec   (4358 perm/sec)   p_kst 3.600769e-02   p_cons 2.169231e-03   p_joint 3.461538e-04

Joint ci ratio: 5.599000e-01	ci left: 2.528063e-04	ci right 4.545534e-04	k: 48	n:140000
Cons ci ratio: 2.245824e-01	ci left: 1.927649e-03	ci right 2.421903e-03	k: 303	n:140000
KS ci ratio: 5.425265e-02	ci left: 3.497382e-02	ci right 3.693117e-02	k: 5032	n:140000
E2F6   140000 perm   33 sec   (4288 perm/sec)   p_kst 3.594286e-02   p_cons 2.164286e-03   p_joint 3.428571e-04

Joint ci ratio: 5.435101e-01	ci left: 2.531625e-04	ci right 4.470133e-04	k: 51	n:150000
Cons ci ratio: 2.155507e-01	ci left: 1.962926e-03	ci right 2.443307e-03	k: 329	n:150000
KS ci ratio: 5.255220e-02	ci left: 3.482594e-02	ci right 3.671206e-02	k: 5364	n:150000
E2F6   150000 perm   36 sec   (4217 perm/sec)   p_kst 3.576000e-02   p_cons 2.193333e-03   p_joint 3.400000e-04

Joint ci ratio: 5.284802e-01	ci left: 2.535502e-04	ci right 4.403416e-04	k: 54	n:160000
Cons ci ratio: 2.066568e-01	ci left: 2.011920e-03	ci right 2.481409e-03	k: 358	n:160000
KS ci ratio: 5.093734e-02	ci left: 3.478381e-02	ci right 3.660806e-02	k: 5710	n:160000
E2F6   160000 perm   39 sec   (4153 perm/sec)   p_kst 3.568750e-02   p_cons 2.237500e-03   p_joint 3.375000e-04

Joint ci ratio: 2.805552e-01	ci left: 9.863088e-04	ci right 1.313439e-03	k: 194	n:170000
Cons ci ratio: 2.000763e-01	ci left: 2.027562e-03	ci right 2.483796e-03	k: 382	n:170000
KS ci ratio: 4.947120e-02	ci left: 3.473581e-02	ci right 3.650360e-02	k: 6054	n:170000
E2F6   170000 perm   42 sec   (4084 perm/sec)   p_kst 3.561176e-02   p_cons 2.247059e-03   p_joint 1.141176e-03

Joint ci ratio: 2.467632e-01	ci left: 1.227355e-03	ci right 1.577908e-03	k: 251	n:180000
Cons ci ratio: 1.940868e-01	ci left: 2.041676e-03	ci right 2.485709e-03	k: 406	n:180000
KS ci ratio: 4.798500e-02	ci left: 3.489150e-02	ci right 3.661239e-02	k: 6434	n:180000
E2F6   180000 perm   45 sec   (4019 perm/sec)   p_kst 3.574444e-02   p_cons 2.255556e-03   p_joint 1.394444e-03

Joint ci ratio: 2.653428e-01	ci left: 9.952622e-04	ci right 1.304493e-03	k: 217	n:190000
Cons ci ratio: 1.908368e-01	ci left: 2.004349e-03	ci right 2.432118e-03	k: 420	n:190000
KS ci ratio: 4.675696e-02	ci left: 3.483896e-02	ci right 3.651209e-02	k: 6777	n:190000
E2F6   190000 perm   48 sec   (3957 perm/sec)   p_kst 3.566842e-02   p_cons 2.210526e-03   p_joint 1.142105e-03

Joint ci ratio: 2.544798e-01	ci left: 1.034315e-03	ci right 1.340437e-03	k: 236	n:200000
Cons ci ratio: 1.845821e-01	ci left: 2.042323e-03	ci right 2.462312e-03	k: 449	n:200000
KS ci ratio: 4.554240e-02	ci left: 3.490592e-02	ci right 3.653758e-02	k: 7143	n:200000
E2F6   200000 perm   51 sec   (3899 perm/sec)   p_kst 3.571500e-02   p_cons 2.245000e-03   p_joint 1.180000e-03

Joint ci ratio: 2.443726e-01	ci left: 1.074352e-03	ci right 1.377780e-03	k: 256	n:210000
Cons ci ratio: 1.794687e-01	ci left: 2.063241e-03	ci right 2.474501e-03	k: 475	n:210000
KS ci ratio: 4.440250e-02	ci left: 3.499056e-02	ci right 3.658419e-02	k: 7514	n:210000
E2F6   210000 perm   55 sec   (3843 perm/sec)   p_kst 3.578095e-02   p_cons 2.261905e-03   p_joint 1.219048e-03

Joint ci ratio: 2.379758e-01	ci left: 1.085310e-03	ci right 1.382627e-03	k: 270	n:220000
Cons ci ratio: 1.759922e-01	ci left: 2.051978e-03	ci right 2.452227e-03	k: 494	n:220000
KS ci ratio: 4.329573e-02	ci left: 3.514444e-02	ci right 3.670418e-02	k: 7902	n:220000
E2F6   220000 perm   58 sec   (3792 perm/sec)   p_kst 3.591818e-02   p_cons 2.245455e-03   p_joint 1.227273e-03

Joint ci ratio: 2.358141e-01	ci left: 1.058570e-03	ci right 1.345542e-03	k: 275	n:230000
Cons ci ratio: 1.695968e-01	ci left: 2.120842e-03	ci right 2.517954e-03	k: 532	n:230000
KS ci ratio: 4.234733e-02	ci left: 3.515628e-02	ci right 3.668153e-02	k: 8260	n:230000
E2F6   230000 perm   61 sec   (3741 perm/sec)   p_kst 3.591304e-02   p_cons 2.313043e-03   p_joint 1.195652e-03

Joint ci ratio: 2.304489e-01	ci left: 1.065467e-03	ci right 1.346802e-03	k: 288	n:240000
Cons ci ratio: 1.660520e-01	ci left: 2.124282e-03	ci right 2.512894e-03	k: 555	n:240000
KS ci ratio: 4.145365e-02	ci left: 3.517572e-02	ci right 3.666885e-02	k: 8620	n:240000
E2F6   240000 perm   65 sec   (3693 perm/sec)   p_kst 3.591667e-02   p_cons 2.312500e-03   p_joint 1.200000e-03

Joint ci ratio: 2.235884e-01	ci left: 1.090756e-03	ci right 1.369015e-03	k: 306	n:250000
Cons ci ratio: 1.625799e-01	ci left: 2.131364e-03	ci right 2.512321e-03	k: 579	n:250000
KS ci ratio: 4.056276e-02	ci left: 3.528106e-02	ci right 3.674572e-02	k: 9002	n:250000
E2F6   250000 perm   69 sec   (3647 perm/sec)   p_kst 3.600800e-02   p_cons 2.316000e-03   p_joint 1.224000e-03

Joint ci ratio: 2.534467e-01	ci left: 8.028173e-04	ci right 1.039305e-03	k: 238	n:260000
Cons ci ratio: 1.597149e-01	ci left: 2.126900e-03	ci right 2.499718e-03	k: 600	n:260000
KS ci ratio: 3.979296e-02	ci left: 3.526433e-02	ci right 3.669988e-02	k: 9354	n:260000
E2F6   260000 perm   72 sec   (3600 perm/sec)   p_kst 3.597692e-02   p_cons 2.307692e-03   p_joint 9.153846e-04

Joint ci ratio: 2.498157e-01	ci left: 7.973741e-04	ci right 1.028370e-03	k: 245	n:270000
Cons ci ratio: 1.568699e-01	ci left: 2.126380e-03	ci right 2.491842e-03	k: 622	n:270000
KS ci ratio: 3.905496e-02	ci left: 3.526743e-02	ci right 3.667588e-02	k: 9711	n:270000
E2F6   270000 perm   76 sec   (3555 perm/sec)   p_kst 3.596667e-02   p_cons 2.303704e-03   p_joint 9.074074e-04

Joint ci ratio: 2.463365e-01	ci left: 7.923421e-04	ci right 1.018194e-03	k: 252	n:280000
Cons ci ratio: 1.542916e-01	ci left: 2.122517e-03	ci right 2.480766e-03	k: 643	n:280000
KS ci ratio: 3.841992e-02	ci left: 3.515731e-02	ci right 3.653803e-02	k: 10036	n:280000
E2F6   280000 perm   80 sec   (3510 perm/sec)   p_kst 3.584286e-02   p_cons 2.296429e-03   p_joint 9.000000e-04

Joint ci ratio: 2.439395e-01	ci left: 7.812017e-04	ci right 1.001383e-03	k: 257	n:290000
Cons ci ratio: 1.508169e-01	ci left: 2.148829e-03	ci right 2.502614e-03	k: 673	n:290000
KS ci ratio: 3.778275e-02	ci left: 3.511305e-02	ci right 3.646866e-02	k: 10378	n:290000
E2F6   290000 perm   84 sec   (3468 perm/sec)   p_kst 3.578621e-02   p_cons 2.320690e-03   p_joint 8.862069e-04

Joint ci ratio: 2.384558e-01	ci left: 7.927452e-04	ci right 1.010416e-03	k: 269	n:300000
Cons ci ratio: 1.478830e-01	ci left: 2.163839e-03	ci right 2.512552e-03	k: 700	n:300000
KS ci ratio: 3.711168e-02	ci left: 3.519084e-02	ci right 3.652481e-02	k: 10756	n:300000
E2F6   300000 perm   87 sec   (3430 perm/sec)   p_kst 3.585333e-02   p_cons 2.333333e-03   p_joint 8.966667e-04

Joint ci ratio: 2.341586e-01	ci left: 7.975214e-04	ci right 1.011986e-03	k: 279	n:310000
Cons ci ratio: 1.450141e-01	ci left: 2.181053e-03	ci right 2.525130e-03	k: 728	n:310000
KS ci ratio: 3.647854e-02	ci left: 3.525742e-02	ci right 3.657063e-02	k: 11132	n:310000
E2F6   310000 perm   91 sec   (3392 perm/sec)   p_kst 3.590968e-02   p_cons 2.348387e-03   p_joint 9.000000e-04

Joint ci ratio: 2.312861e-01	ci left: 7.931983e-04	ci right 1.003509e-03	k: 286	n:320000
Cons ci ratio: 1.433538e-01	ci left: 2.164102e-03	ci right 2.501262e-03	k: 745	n:320000
KS ci ratio: 3.588320e-02	ci left: 3.530762e-02	ci right 3.660080e-02	k: 11504	n:320000
E2F6   320000 perm   95 sec   (3355 perm/sec)   p_kst 3.595000e-02   p_cons 2.328125e-03   p_joint 8.937500e-04

Joint ci ratio: 2.273587e-01	ci left: 7.977245e-04	ci right 1.005141e-03	k: 296	n:330000
Cons ci ratio: 1.405540e-01	ci left: 2.186205e-03	ci right 2.519600e-03	k: 775	n:330000
KS ci ratio: 3.529298e-02	ci left: 3.540002e-02	ci right 3.667481e-02	k: 11891	n:330000
E2F6   330000 perm   99 sec   (3317 perm/sec)   p_kst 3.603333e-02   p_cons 2.348485e-03   p_joint 8.969697e-04

Joint ci ratio: 2.250974e-01	ci left: 7.909087e-04	ci right 9.942236e-04	k: 302	n:340000
Cons ci ratio: 1.386034e-01	ci left: 2.184351e-03	ci right 2.512458e-03	k: 797	n:340000
KS ci ratio: 3.477063e-02	ci left: 3.540839e-02	ci right 3.666424e-02	k: 12251	n:340000
E2F6   340000 perm   104 sec   (3278 perm/sec)   p_kst 3.603235e-02   p_cons 2.344118e-03   p_joint 8.882353e-04

Joint ci ratio: 2.211188e-01	ci left: 7.979840e-04	ci right 9.989988e-04	k: 313	n:350000
Cons ci ratio: 1.367317e-01	ci left: 2.182633e-03	ci right 2.505695e-03	k: 819	n:350000
KS ci ratio: 3.429903e-02	ci left: 3.535974e-02	ci right 3.659652e-02	k: 12591	n:350000
E2F6   350000 perm   108 sec   (3242 perm/sec)   p_kst 3.597429e-02   p_cons 2.340000e-03   p_joint 8.942857e-04

Joint ci ratio: 2.180165e-01	ci left: 7.994431e-04	ci right 9.976214e-04	k: 322	n:360000
Cons ci ratio: 1.354183e-01	ci left: 2.164934e-03	ci right 2.482050e-03	k: 835	n:360000
KS ci ratio: 3.380681e-02	ci left: 3.539381e-02	ci right 3.661367e-02	k: 12960	n:360000
E2F6   360000 perm   112 sec   (3206 perm/sec)   p_kst 3.600000e-02   p_cons 2.319444e-03   p_joint 8.944444e-04

Joint ci ratio: 2.143957e-01	ci left: 8.059568e-04	ci right 1.001995e-03	k: 333	n:370000
Cons ci ratio: 1.334375e-01	ci left: 2.171718e-03	ci right 2.484806e-03	k: 860	n:370000
KS ci ratio: 3.337416e-02	ci left: 3.534573e-02	ci right 3.654804e-02	k: 13299	n:370000
E2F6   370000 perm   117 sec   (3171 perm/sec)   p_kst 3.594324e-02   p_cons 2.324324e-03   p_joint 9.000000e-04

Joint ci ratio: 2.115643e-01	ci left: 8.071684e-04	ci right 1.000573e-03	k: 342	n:380000
Cons ci ratio: 1.316903e-01	ci left: 2.173087e-03	ci right 2.481949e-03	k: 883	n:380000
KS ci ratio: 3.293643e-02	ci left: 3.534465e-02	ci right 3.653086e-02	k: 13655	n:380000
E2F6   380000 perm   121 sec   (3137 perm/sec)   p_kst 3.593421e-02   p_cons 2.323684e-03   p_joint 9.000000e-04

Joint ci ratio: 2.085458e-01	ci left: 8.107642e-04	ci right 1.001905e-03	k: 352	n:390000
Cons ci ratio: 1.301538e-01	ci left: 2.169449e-03	ci right 2.473918e-03	k: 904	n:390000
KS ci ratio: 3.249985e-02	ci left: 3.537680e-02	ci right 3.654806e-02	k: 14024	n:390000
E2F6   390000 perm   126 sec   (3103 perm/sec)   p_kst 3.595897e-02   p_cons 2.317949e-03   p_joint 9.025641e-04

Joint ci ratio: 2.053701e-01	ci left: 8.165703e-04	ci right 1.005780e-03	k: 363	n:400000
Cons ci ratio: 1.285308e-01	ci left: 2.170853e-03	ci right 2.471429e-03	k: 927	n:400000
KS ci ratio: 3.213580e-02	ci left: 3.528837e-02	ci right 3.644337e-02	k: 14345	n:400000
E2F6   400000 perm   130 sec   (3071 perm/sec)   p_kst 3.586250e-02   p_cons 2.317500e-03   p_joint 9.075000e-04

Joint ci ratio: 2.079617e-01	ci left: 7.758369e-04	ci right 9.581653e-04	k: 354	n:410000
Cons ci ratio: 1.265012e-01	ci left: 2.188743e-03	ci right 2.486653e-03	k: 957	n:410000
KS ci ratio: 3.170979e-02	ci left: 3.536407e-02	ci right 3.650592e-02	k: 14732	n:410000
E2F6   410000 perm   135 sec   (3038 perm/sec)   p_kst 3.593171e-02   p_cons 2.334146e-03   p_joint 8.634146e-04

Joint ci ratio: 2.056575e-01	ci left: 7.754258e-04	ci right 9.553845e-04	k: 362	n:420000
Cons ci ratio: 1.253301e-01	ci left: 2.178136e-03	ci right 2.471654e-03	k: 975	n:420000
KS ci ratio: 3.136057e-02	ci left: 3.530393e-02	ci right 3.643106e-02	k: 15063	n:420000
E2F6   420000 perm   140 sec   (3004 perm/sec)   p_kst 3.586429e-02   p_cons 2.321429e-03   p_joint 8.619048e-04

Joint ci ratio: 2.023394e-01	ci left: 7.838745e-04	ci right 9.624964e-04	k: 374	n:430000
Cons ci ratio: 1.238790e-01	ci left: 2.179303e-03	ci right 2.469328e-03	k: 998	n:430000
KS ci ratio: 3.099655e-02	ci left: 3.530436e-02	ci right 3.641819e-02	k: 15419	n:430000
E2F6   430000 perm   145 sec   (2970 perm/sec)   p_kst 3.585814e-02   p_cons 2.320930e-03   p_joint 8.697674e-04

Joint ci ratio: 2.002152e-01	ci left: 7.833247e-04	ci right 9.597184e-04	k: 382	n:440000
Cons ci ratio: 1.228391e-01	ci left: 2.167217e-03	ci right 2.453036e-03	k: 1015	n:440000
KS ci ratio: 3.064895e-02	ci left: 3.529582e-02	ci right 3.639667e-02	k: 15771	n:440000
E2F6   440000 perm   150 sec   (2937 perm/sec)   p_kst 3.584318e-02   p_cons 2.306818e-03   p_joint 8.681818e-04

Joint ci ratio: 1.984107e-01	ci left: 7.806966e-04	ci right 9.547223e-04	k: 389	n:450000
Cons ci ratio: 1.211800e-01	ci left: 2.179381e-03	ci right 2.462644e-03	k: 1043	n:450000
KS ci ratio: 3.028552e-02	ci left: 3.534949e-02	ci right 3.643872e-02	k: 16151	n:450000
E2F6   450000 perm   155 sec   (2905 perm/sec)   p_kst 3.589111e-02   p_cons 2.317778e-03   p_joint 8.644444e-04

Joint ci ratio: 1.974019e-01	ci left: 7.719894e-04	ci right 9.430940e-04	k: 393	n:460000
Cons ci ratio: 1.194190e-01	ci left: 2.197367e-03	ci right 2.478525e-03	k: 1074	n:460000
KS ci ratio: 2.994975e-02	ci left: 3.536637e-02	ci right 3.644383e-02	k: 16515	n:460000
E2F6   460000 perm   160 sec   (2873 perm/sec)   p_kst 3.590217e-02   p_cons 2.334783e-03   p_joint 8.543478e-04

Joint ci ratio: 1.951852e-01	ci left: 7.737720e-04	ci right 9.431169e-04	k: 402	n:470000
Cons ci ratio: 1.179465e-01	ci left: 2.206357e-03	ci right 2.484941e-03	k: 1101	n:470000
KS ci ratio: 2.964861e-02	ci left: 3.532768e-02	ci right 3.639295e-02	k: 16853	n:470000
E2F6   470000 perm   165 sec   (2844 perm/sec)   p_kst 3.585745e-02   p_cons 2.342553e-03   p_joint 8.553191e-04

Joint ci ratio: 1.930414e-01	ci left: 7.754906e-04	ci right 9.431287e-04	k: 411	n:480000
Cons ci ratio: 1.169432e-01	ci left: 2.198811e-03	ci right 2.473918e-03	k: 1120	n:480000
KS ci ratio: 2.933337e-02	ci left: 3.534443e-02	ci right 3.639868e-02	k: 17217	n:480000
E2F6   480000 perm   170 sec   (2816 perm/sec)   p_kst 3.586875e-02   p_cons 2.333333e-03   p_joint 8.562500e-04

Joint ci ratio: 1.902895e-01	ci left: 7.829793e-04	ci right 9.495443e-04	k: 423	n:490000
Cons ci ratio: 1.153581e-01	ci left: 2.215366e-03	ci right 2.488531e-03	k: 1151	n:490000
KS ci ratio: 2.902027e-02	ci left: 3.537879e-02	ci right 3.642262e-02	k: 17590	n:490000
E2F6   490000 perm   176 sec   (2789 perm/sec)   p_kst 3.589796e-02   p_cons 2.348980e-03   p_joint 8.632653e-04

Joint ci ratio: 1.872226e-01	ci left: 7.939971e-04	ci right 9.598743e-04	k: 437	n:500000
Cons ci ratio: 1.144680e-01	ci left: 2.206023e-03	ci right 2.475795e-03	k: 1169	n:500000
KS ci ratio: 2.872777e-02	ci left: 3.538602e-02	ci right 3.641937e-02	k: 17950	n:500000
E2F6   500000 perm   181 sec   (2762 perm/sec)   p_kst 3.590000e-02   p_cons 2.338000e-03   p_joint 8.740000e-04

Joint ci ratio: 1.851210e-01	ci left: 7.971227e-04	ci right 9.615738e-04	k: 447	n:510000
Cons ci ratio: 1.130746e-01	ci left: 2.218013e-03	ci right 2.485730e-03	k: 1198	n:510000
KS ci ratio: 2.845926e-02	ci left: 3.535602e-02	ci right 3.637868e-02	k: 18291	n:510000
E2F6   510000 perm   186 sec   (2736 perm/sec)   p_kst 3.586471e-02   p_cons 2.349020e-03   p_joint 8.764706e-04

Joint ci ratio: 1.836918e-01	ci left: 7.946335e-04	ci right 9.571644e-04	k: 454	n:520000
Cons ci ratio: 1.118679e-01	ci left: 2.223953e-03	ci right 2.489333e-03	k: 1224	n:520000
KS ci ratio: 2.816602e-02	ci left: 3.540552e-02	ci right 3.641889e-02	k: 18673	n:520000
E2F6   520000 perm   192 sec   (2710 perm/sec)   p_kst 3.590962e-02   p_cons 2.353846e-03   p_joint 8.730769e-04

Joint ci ratio: 1.822952e-01	ci left: 7.922428e-04	ci right 9.529167e-04	k: 461	n:530000
Cons ci ratio: 1.103899e-01	ci left: 2.242526e-03	ci right 2.506357e-03	k: 1257	n:530000
KS ci ratio: 2.791586e-02	ci left: 3.536887e-02	ci right 3.637206e-02	k: 19010	n:530000
E2F6   530000 perm   197 sec   (2685 perm/sec)   p_kst 3.586792e-02   p_cons 2.371698e-03   p_joint 8.698113e-04

Joint ci ratio: 1.799724e-01	ci left: 7.987866e-04	ci right 9.584985e-04	k: 473	n:540000
Cons ci ratio: 1.091811e-01	ci left: 2.251426e-03	ci right 2.513217e-03	k: 1285	n:540000
KS ci ratio: 2.766632e-02	ci left: 3.534834e-02	ci right 3.634184e-02	k: 19355	n:540000
E2F6   540000 perm   203 sec   (2661 perm/sec)   p_kst 3.584259e-02   p_cons 2.379630e-03   p_joint 8.759259e-04

Joint ci ratio: 1.786583e-01	ci left: 7.964191e-04	ci right 9.543693e-04	k: 480	n:550000
Cons ci ratio: 1.078878e-01	ci left: 2.265326e-03	ci right 2.525415e-03	k: 1316	n:550000
KS ci ratio: 2.742480e-02	ci left: 3.532497e-02	ci right 3.630901e-02	k: 19698	n:550000
E2F6   550000 perm   209 sec   (2637 perm/sec)   p_kst 3.581455e-02   p_cons 2.392727e-03   p_joint 8.727273e-04

Joint ci ratio: 1.777375e-01	ci left: 7.907275e-04	ci right 9.466537e-04	k: 485	n:560000
Cons ci ratio: 1.073198e-01	ci left: 2.249200e-03	ci right 2.505992e-03	k: 1330	n:560000
KS ci ratio: 2.718739e-02	ci left: 3.530781e-02	ci right 3.628272e-02	k: 20044	n:560000
E2F6   560000 perm   214 sec   (2612 perm/sec)   p_kst 3.579286e-02   p_cons 2.375000e-03   p_joint 8.660714e-04

Joint ci ratio: 1.761142e-01	ci left: 7.919454e-04	ci right 9.465336e-04	k: 494	n:570000
Cons ci ratio: 1.062865e-01	ci left: 2.254136e-03	ci right 2.508859e-03	k: 1356	n:570000
KS ci ratio: 2.695260e-02	ci left: 3.529999e-02	ci right 3.626614e-02	k: 20395	n:570000
E2F6   570000 perm   221 sec   (2576 perm/sec)   p_kst 3.578070e-02   p_cons 2.378947e-03   p_joint 8.666667e-04

Joint ci ratio: 1.803590e-01	ci left: 7.404030e-04	ci right 8.887942e-04	k: 471	n:580000
Cons ci ratio: 1.054355e-01	ci left: 2.252198e-03	ci right 2.504538e-03	k: 1378	n:580000
KS ci ratio: 2.670979e-02	ci left: 3.532845e-02	ci right 3.628654e-02	k: 20767	n:580000
E2F6   580000 perm   227 sec   (2550 perm/sec)   p_kst 3.580517e-02   p_cons 2.375862e-03   p_joint 8.120690e-04

Joint ci ratio: 1.784780e-01	ci left: 7.440419e-04	ci right 8.914393e-04	k: 481	n:590000
Cons ci ratio: 1.040477e-01	ci left: 2.275096e-03	ci right 2.526440e-03	k: 1415	n:590000
KS ci ratio: 2.647601e-02	ci left: 3.534925e-02	ci right 3.629938e-02	k: 21135	n:590000
E2F6   590000 perm   234 sec   (2522 perm/sec)   p_kst 3.582203e-02   p_cons 2.398305e-03   p_joint 8.152542e-04

Joint ci ratio: 1.762964e-01	ci left: 7.507535e-04	ci right 8.974687e-04	k: 493	n:600000
Cons ci ratio: 1.032129e-01	ci left: 2.274517e-03	ci right 2.523660e-03	k: 1438	n:600000
KS ci ratio: 2.626474e-02	ci left: 3.532633e-02	ci right 3.626816e-02	k: 21477	n:600000
E2F6   600000 perm   241 sec   (2494 perm/sec)   p_kst 3.579500e-02   p_cons 2.396667e-03   p_joint 8.216667e-04

Joint ci ratio: 1.750606e-01	ci left: 7.494168e-04	ci right 8.947357e-04	k: 500	n:610000
Cons ci ratio: 1.024682e-01	ci left: 2.270770e-03	ci right 2.517600e-03	k: 1459	n:610000
KS ci ratio: 2.607270e-02	ci left: 3.526673e-02	ci right 3.619998e-02	k: 21796	n:610000
E2F6   610000 perm   247 sec   (2470 perm/sec)   p_kst 3.573115e-02   p_cons 2.391803e-03   p_joint 8.196721e-04

Joint ci ratio: 1.740220e-01	ci left: 7.465840e-04	ci right 8.904044e-04	k: 506	n:620000
Cons ci ratio: 1.014992e-01	ci left: 2.278155e-03	ci right 2.523306e-03	k: 1487	n:620000
KS ci ratio: 2.587754e-02	ci left: 3.522830e-02	ci right 3.615346e-02	k: 22127	n:620000
E2F6   620000 perm   254 sec   (2445 perm/sec)   p_kst 3.568871e-02   p_cons 2.398387e-03   p_joint 8.161290e-04

Joint ci ratio: 1.726651e-01	ci left: 7.468810e-04	ci right 8.895198e-04	k: 514	n:630000
Cons ci ratio: 1.006570e-01	ci left: 2.280673e-03	ci right 2.523939e-03	k: 1512	n:630000
KS ci ratio: 2.569321e-02	ci left: 3.517377e-02	ci right 3.609082e-02	k: 22447	n:630000
E2F6   630000 perm   260 sec   (2423 perm/sec)   p_kst 3.563016e-02   p_cons 2.400000e-03   p_joint 8.158730e-04

Joint ci ratio: 1.716683e-01	ci left: 7.441819e-04	ci right 8.853997e-04	k: 520	n:640000
Cons ci ratio: 9.993327e-02	ci left: 2.278550e-03	ci right 2.519739e-03	k: 1534	n:640000
KS ci ratio: 2.547913e-02	ci left: 3.521104e-02	ci right 3.612130e-02	k: 22825	n:640000
E2F6   640000 perm   266 sec   (2403 perm/sec)   p_kst 3.566406e-02   p_cons 2.396875e-03   p_joint 8.125000e-04

Joint ci ratio: 1.700439e-01	ci left: 7.474598e-04	ci right 8.878199e-04	k: 530	n:650000
Cons ci ratio: 9.928884e-02	ci left: 2.273498e-03	ci right 2.512510e-03	k: 1554	n:650000
KS ci ratio: 2.526750e-02	ci left: 3.525483e-02	ci right 3.615854e-02	k: 23208	n:650000
E2F6   650000 perm   273 sec   (2384 perm/sec)   p_kst 3.570462e-02   p_cons 2.390769e-03   p_joint 8.153846e-04

Joint ci ratio: 1.681540e-01	ci left: 7.535472e-04	ci right 8.933184e-04	k: 542	n:660000
Cons ci ratio: 9.850011e-02	ci left: 2.275993e-03	ci right 2.513257e-03	k: 1579	n:660000
KS ci ratio: 2.507373e-02	ci left: 3.526269e-02	ci right 3.615957e-02	k: 23568	n:660000
E2F6   660000 perm   279 sec   (2364 perm/sec)   p_kst 3.570909e-02   p_cons 2.392424e-03   p_joint 8.212121e-04

Joint ci ratio: 1.686218e-01	ci left: 7.380108e-04	ci right 8.753198e-04	k: 539	n:670000
Cons ci ratio: 9.776043e-02	ci left: 2.276965e-03	ci right 2.512445e-03	k: 1603	n:670000
KS ci ratio: 2.489514e-02	ci left: 3.524067e-02	ci right 3.613052e-02	k: 23908	n:670000
E2F6   670000 perm   286 sec   (2345 perm/sec)   p_kst 3.568358e-02   p_cons 2.392537e-03   p_joint 8.044776e-04

Joint ci ratio: 2.407566e-01	ci left: 3.428190e-04	ci right 4.379924e-04	k: 264	n:680000
Cons ci ratio: 9.700729e-02	ci left: 2.279350e-03	ci right 2.513157e-03	k: 1628	n:680000
KS ci ratio: 2.470922e-02	ci left: 3.525002e-02	ci right 3.613336e-02	k: 24269	n:680000
E2F6   680000 perm   293 sec   (2325 perm/sec)   p_kst 3.568971e-02   p_cons 2.394118e-03   p_joint 3.882353e-04

Joint ci ratio: 2.372021e-01	ci left: 3.487508e-04	ci right 4.439316e-04	k: 272	n:690000
Cons ci ratio: 9.624214e-02	ci left: 2.283086e-03	ci right 2.515326e-03	k: 1654	n:690000
KS ci ratio: 2.453463e-02	ci left: 3.523895e-02	ci right 3.611568e-02	k: 24616	n:690000
E2F6   690000 perm   299 sec   (2304 perm/sec)   p_kst 3.567536e-02   p_cons 2.397101e-03   p_joint 3.942029e-04

Joint ci ratio: 2.350591e-01	ci left: 3.504890e-04	ci right 4.451543e-04	k: 277	n:700000
Cons ci ratio: 9.535277e-02	ci left: 2.293696e-03	ci right 2.524738e-03	k: 1685	n:700000
KS ci ratio: 2.437028e-02	ci left: 3.520975e-02	ci right 3.607981e-02	k: 24950	n:700000
E2F6   700000 perm   307 sec   (2283 perm/sec)   p_kst 3.564286e-02   p_cons 2.407143e-03   p_joint 3.957143e-04

Joint ci ratio: 2.333861e-01	ci left: 3.508558e-04	ci right 4.448483e-04	k: 281	n:710000
Cons ci ratio: 9.465353e-02	ci left: 2.295765e-03	ci right 2.525226e-03	k: 1710	n:710000
KS ci ratio: 2.420124e-02	ci left: 3.520380e-02	ci right 3.606760e-02	k: 25300	n:710000
E2F6   710000 perm   314 sec   (2263 perm/sec)   p_kst 3.563380e-02   p_cons 2.408451e-03   p_joint 3.957746e-04

Joint ci ratio: 2.317483e-01	ci left: 3.512147e-04	ci right 4.445485e-04	k: 285	n:720000
Cons ci ratio: 9.405095e-02	ci left: 2.293714e-03	ci right 2.521430e-03	k: 1732	n:720000
KS ci ratio: 2.403130e-02	ci left: 3.521047e-02	ci right 3.606828e-02	k: 25659	n:720000
E2F6   720000 perm   321 sec   (2244 perm/sec)   p_kst 3.563750e-02   p_cons 2.405556e-03   p_joint 3.958333e-04

Joint ci ratio: 2.305424e-01	ci left: 3.502751e-04	ci right 4.428060e-04	k: 288	n:730000
Cons ci ratio: 9.348644e-02	ci left: 2.290386e-03	ci right 2.516332e-03	k: 1753	n:730000
KS ci ratio: 2.387013e-02	ci left: 3.520199e-02	ci right 3.605376e-02	k: 26007	n:730000
E2F6   730000 perm   328 sec   (2226 perm/sec)   p_kst 3.562603e-02   p_cons 2.401370e-03   p_joint 3.945205e-04

Joint ci ratio: 2.289633e-01	ci left: 3.506360e-04	ci right 4.425381e-04	k: 292	n:740000
Cons ci ratio: 9.243735e-02	ci left: 2.312233e-03	ci right 2.537636e-03	k: 1793	n:740000
KS ci ratio: 2.371915e-02	ci left: 3.517360e-02	ci right 3.601923e-02	k: 26340	n:740000
E2F6   740000 perm   335 sec   (2206 perm/sec)   p_kst 3.559459e-02   p_cons 2.422973e-03   p_joint 3.945946e-04

Joint ci ratio: 2.281862e-01	ci left: 3.484748e-04	ci right 4.394568e-04	k: 294	n:750000
Cons ci ratio: 9.164849e-02	ci left: 2.321786e-03	ci right 2.546085e-03	k: 1824	n:750000
KS ci ratio: 2.355224e-02	ci left: 3.520034e-02	ci right 3.604058e-02	k: 26714	n:750000
E2F6   750000 perm   343 sec   (2188 perm/sec)   p_kst 3.561867e-02   p_cons 2.432000e-03   p_joint 3.920000e-04

Joint ci ratio: 1.499271e-01	ci left: 8.313018e-04	ci right 9.672855e-04	k: 682	n:760000
Cons ci ratio: 9.080595e-02	ci left: 2.334953e-03	ci right 2.558340e-03	k: 1858	n:760000
KS ci ratio: 2.340853e-02	ci left: 3.516884e-02	ci right 3.600313e-02	k: 27044	n:760000
E2F6   760000 perm   350 sec   (2170 perm/sec)   p_kst 3.558421e-02   p_cons 2.444737e-03   p_joint 8.973684e-04

Joint ci ratio: 1.492732e-01	ci left: 8.280061e-04	ci right 9.628072e-04	k: 688	n:770000
Cons ci ratio: 9.003390e-02	ci left: 2.345248e-03	ci right 2.567612e-03	k: 1890	n:770000
KS ci ratio: 2.325333e-02	ci left: 3.517949e-02	ci right 3.600843e-02	k: 27406	n:770000
E2F6   770000 perm   357 sec   (2154 perm/sec)   p_kst 3.559221e-02   p_cons 2.454545e-03   p_joint 8.935065e-04

Joint ci ratio: 9.573518e-02	ci left: 2.042164e-03	ci right 2.248741e-03	k: 1672	n:780000
Cons ci ratio: 7.635249e-02	ci left: 3.239324e-03	ci right 3.497719e-03	k: 2626	n:780000
KS ci ratio: 2.310031e-02	ci left: 3.519243e-02	ci right 3.601615e-02	k: 27770	n:780000
E2F6   780000 perm   365 sec   (2137 perm/sec)   p_kst 3.560256e-02   p_cons 3.366667e-03   p_joint 2.143590e-03

Outputting figure to mutsig2_images.part000000000054/E2F6.3_874_780000_0.035603_0.0033667_0.0021436.png
                gene_name: E2F6
               theta_stop: 0.096 
                    nperm: 780000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0035 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0022 

Current progress: 59 percent done.
E4F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
E4F1   10000 perm   2 sec   (5685 perm/sec)   p_kst 4.000000e-01   p_cons 8.780000e-02   p_joint 2.468000e-01

Joint ci ratio: 5.581171e-02	ci left: 1.922986e-01	ci right 2.033894e-01	k: 3956	n:20000
Cons ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
KS ci ratio: 3.398032e-02	ci left: 3.927019e-01	ci right 4.063273e-01	k: 7990	n:20000
E4F1   20000 perm   4 sec   (5066 perm/sec)   p_kst 3.995000e-01   p_cons 9.215000e-02   p_joint 1.978000e-01

Outputting figure to mutsig2_images.part000000000054/E4F1.3_2411_20000_0.3995_0.09215_0.1978.png
                gene_name: E4F1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 61 percent done.
EBI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
Cons ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
KS ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
EBI3   10000 perm   2 sec   (6461 perm/sec)   p_kst 3.503000e-01   p_cons 3.086000e-01   p_joint 3.690000e-01

Outputting figure to mutsig2_images.part000000000054/EBI3.3_710_10000_0.3503_0.3086_0.369.png
                gene_name: EBI3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 63 percent done.
EBNA1BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
EBNA1BP2   10000 perm   1 sec   (6916 perm/sec)   p_kst 6.727000e-01   p_cons 1.383000e-01   p_joint 6.864000e-01

Outputting figure to mutsig2_images.part000000000054/EBNA1BP2.3_1126_10000_0.6727_0.1383_0.6864.png
                gene_name: EBNA1BP2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 65 percent done.
ECE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
Cons ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
KS ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
ECE2   10000 perm   2 sec   (5498 perm/sec)   p_kst 7.473000e-01   p_cons 2.911000e-01   p_joint 7.787000e-01

Outputting figure to mutsig2_images.part000000000054/ECE2.3_3292_10000_0.7473_0.2911_0.7787.png
                gene_name: ECE2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 67 percent done.
ECM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
Cons ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
KS ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
ECM2   10000 perm   2 sec   (5925 perm/sec)   p_kst 1.103000e-01   p_cons 6.678000e-01   p_joint 2.688000e-01

Joint ci ratio: 4.615060e-02	ci left: 2.589427e-01	ci right 2.712257e-01	k: 5301	n:20000
Cons ci ratio: 1.918255e-02	ci left: 6.696145e-01	ci right 6.826343e-01	k: 13523	n:20000
KS ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
ECM2   20000 perm   4 sec   (5282 perm/sec)   p_kst 1.044500e-01   p_cons 6.761500e-01   p_joint 2.650500e-01

Outputting figure to mutsig2_images.part000000000054/ECM2.3_2136_20000_0.10445_0.67615_0.26505.png
                gene_name: ECM2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 69 percent done.
EDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
Cons ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
KS ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
EDA   10000 perm   2 sec   (6126 perm/sec)   p_kst 7.574000e-01   p_cons 7.784000e-01   p_joint 9.885000e-01

Outputting figure to mutsig2_images.part000000000054/EDA.3_1344_10000_0.7574_0.7784_0.9885.png
                gene_name: EDA
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 71 percent done.
EDAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
Cons ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
KS ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
EDAR   10000 perm   2 sec   (6215 perm/sec)   p_kst 6.261000e-01   p_cons 1.890000e-02   p_joint 1.148000e-01

Joint ci ratio: 3.468081e-02	ci left: 3.829825e-01	ci right 3.965496e-01	k: 7795	n:20000
Cons ci ratio: 2.024506e-01	ci left: 1.653520e-02	ci right 2.030666e-02	k: 367	n:20000
KS ci ratio: 2.103450e-02	ci left: 6.278319e-01	ci right 6.412289e-01	k: 12691	n:20000
EDAR   20000 perm   4 sec   (5461 perm/sec)   p_kst 6.345500e-01   p_cons 1.835000e-02   p_joint 3.897500e-01

Joint ci ratio: 2.711029e-02	ci left: 4.050920e-01	ci right 4.162587e-01	k: 12320	n:30000
Cons ci ratio: 1.673200e-01	ci left: 1.646177e-02	ci right 1.949927e-02	k: 538	n:30000
KS ci ratio: 1.712244e-02	ci left: 6.304923e-01	ci right 6.414147e-01	k: 19079	n:30000
EDAR   30000 perm   6 sec   (5187 perm/sec)   p_kst 6.359667e-01   p_cons 1.793333e-02   p_joint 4.106667e-01

Joint ci ratio: 2.209624e-02	ci left: 4.354521e-01	ci right 4.452066e-01	k: 17613	n:40000
Cons ci ratio: 1.439550e-01	ci left: 1.688847e-02	ci right 1.953214e-02	k: 727	n:40000
KS ci ratio: 1.480830e-02	ci left: 6.318642e-01	ci right 6.413159e-01	k: 25464	n:40000
EDAR   40000 perm   8 sec   (5010 perm/sec)   p_kst 6.366000e-01   p_cons 1.817500e-02   p_joint 4.403250e-01

Joint ci ratio: 2.154972e-02	ci left: 3.939252e-01	ci right 4.025267e-01	k: 19911	n:50000
Cons ci ratio: 1.281138e-01	ci left: 1.720130e-02	ci right 1.957509e-02	k: 918	n:50000
KS ci ratio: 1.323929e-02	ci left: 6.325668e-01	ci right 6.410173e-01	k: 31840	n:50000
EDAR   50000 perm   10 sec   (4878 perm/sec)   p_kst 6.368000e-01   p_cons 1.836000e-02   p_joint 3.982200e-01

Joint ci ratio: 1.983960e-02	ci left: 3.902534e-01	ci right 3.980902e-01	k: 23650	n:60000
Cons ci ratio: 1.156130e-01	ci left: 1.771204e-02	ci right 1.990152e-02	k: 1127	n:60000
KS ci ratio: 1.207578e-02	ci left: 6.333212e-01	ci right 6.410322e-01	k: 38231	n:60000
EDAR   60000 perm   13 sec   (4764 perm/sec)   p_kst 6.371833e-01   p_cons 1.878333e-02   p_joint 3.941667e-01

Joint ci ratio: 1.807019e-02	ci left: 3.983648e-01	ci right 4.056433e-01	k: 28140	n:70000
Cons ci ratio: 1.072448e-01	ci left: 1.772325e-02	ci right 1.974550e-02	k: 1310	n:70000
KS ci ratio: 1.118135e-02	ci left: 6.335538e-01	ci right 6.406919e-01	k: 44599	n:70000
EDAR   70000 perm   15 sec   (4663 perm/sec)   p_kst 6.371286e-01   p_cons 1.871429e-02   p_joint 4.020000e-01

Joint ci ratio: 1.488766e-02	ci left: 4.608017e-01	ci right 4.677259e-01	k: 37141	n:80000
Cons ci ratio: 1.013675e-01	ci left: 1.741902e-02	ci right 1.929114e-02	k: 1467	n:80000
KS ci ratio: 1.045562e-02	ci left: 6.339447e-01	ci right 6.406203e-01	k: 50983	n:80000
EDAR   80000 perm   17 sec   (4573 perm/sec)   p_kst 6.372875e-01   p_cons 1.833750e-02   p_joint 4.642625e-01

Joint ci ratio: 1.411318e-02	ci left: 4.582832e-01	ci right 4.648081e-01	k: 41539	n:90000
Cons ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
KS ci ratio: 9.871617e-03	ci left: 6.334811e-01	ci right 6.397767e-01	k: 57297	n:90000
EDAR   90000 perm   20 sec   (4488 perm/sec)   p_kst 6.366333e-01   p_cons 1.821111e-02   p_joint 4.615444e-01

Outputting figure to mutsig2_images.part000000000054/EDAR.3_1391_90000_0.63663_0.018211_0.46154.png
                gene_name: EDAR
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
EDARADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
KS ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
EDARADD   10000 perm   2 sec   (6490 perm/sec)   p_kst 3.587000e-01   p_cons 7.411000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000054/EDARADD.3_707_10000_0.3587_0.7411_0.5145.png
                gene_name: EDARADD
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 75 percent done.
EDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
EDC4   10000 perm   2 sec   (5218 perm/sec)   p_kst 7.394000e-01   p_cons 9.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDC4.3_4322_10000_0.7394_0.9565_1.png
                gene_name: EDC4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
EEFSEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
Cons ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
KS ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
EEFSEC   10000 perm   2 sec   (6029 perm/sec)   p_kst 1.526000e-01   p_cons 4.621000e-01   p_joint 1.877000e-01

Outputting figure to mutsig2_images.part000000000054/EEFSEC.3_1819_10000_0.1526_0.4621_0.1877.png
                gene_name: EEFSEC
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 78 percent done.
EFCAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
Cons ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
KS ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
EFCAB1   10000 perm   2 sec   (6491 perm/sec)   p_kst 8.089000e-01   p_cons 3.433000e-01   p_joint 7.445000e-01

Outputting figure to mutsig2_images.part000000000054/EFCAB1.3_660_10000_0.8089_0.3433_0.7445.png
                gene_name: EFCAB1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 80 percent done.
DYRK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
Cons ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
KS ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
DYRK1B   10000 perm   2 sec   (6455 perm/sec)   p_kst 1.742000e-01   p_cons 4.552000e-01   p_joint 1.423000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK1B.2_1930_10000_0.1742_0.4552_0.1423.png
                gene_name: DYRK1B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 82 percent done.
E2F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
E2F8   10000 perm   2 sec   (5925 perm/sec)   p_kst 4.687000e-01   p_cons 8.070000e-02   p_joint 3.268000e-01

Joint ci ratio: 4.577458e-02	ci left: 2.621188e-01	ci right 2.744486e-01	k: 5365	n:20000
Cons ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
KS ci ratio: 2.905989e-02	ci left: 4.694071e-01	ci right 4.832998e-01	k: 9527	n:20000
E2F8   20000 perm   4 sec   (5266 perm/sec)   p_kst 4.763500e-01   p_cons 8.115000e-02   p_joint 2.682500e-01

Outputting figure to mutsig2_images.part000000000054/E2F8.2_2652_20000_0.47635_0.08115_0.26825.png
                gene_name: E2F8
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 84 percent done.
EARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
EARS2   10000 perm   2 sec   (6371 perm/sec)   p_kst 7.170000e-02   p_cons 3.800000e-02   p_joint 1.090000e-02

Joint ci ratio: 2.652715e-01	ci left: 9.367279e-03	ci right 1.227757e-02	k: 215	n:20000
Cons ci ratio: 1.390823e-01	ci left: 3.553751e-02	ci right 4.089781e-02	k: 763	n:20000
KS ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
EARS2   20000 perm   4 sec   (5628 perm/sec)   p_kst 7.005000e-02   p_cons 3.815000e-02   p_joint 1.075000e-02

Joint ci ratio: 2.162579e-01	ci left: 9.661284e-03	ci right 1.203487e-02	k: 324	n:30000
Cons ci ratio: 1.152982e-01	ci left: 3.495708e-02	ci right 3.926649e-02	k: 1112	n:30000
KS ci ratio: 8.186495e-02	ci left: 6.808608e-02	ci right 7.393066e-02	k: 2129	n:30000
EARS2   30000 perm   6 sec   (5352 perm/sec)   p_kst 7.096667e-02   p_cons 3.706667e-02   p_joint 1.080000e-02

Joint ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
Cons ci ratio: 9.974686e-02	ci left: 3.531773e-02	ci right 3.904984e-02	k: 1486	n:40000
KS ci ratio: 7.130359e-02	ci left: 6.773966e-02	ci right 7.277295e-02	k: 2809	n:40000
EARS2   40000 perm   8 sec   (5167 perm/sec)   p_kst 7.022500e-02   p_cons 3.715000e-02   p_joint 1.792500e-02

Joint ci ratio: 1.447271e-01	ci left: 1.341261e-02	ci right 1.552431e-02	k: 722	n:50000
Cons ci ratio: 9.024903e-02	ci left: 3.471669e-02	ci right 3.801742e-02	k: 1817	n:50000
KS ci ratio: 6.377112e-02	ci left: 6.801503e-02	ci right 7.251501e-02	k: 3512	n:50000
EARS2   50000 perm   10 sec   (5025 perm/sec)   p_kst 7.024000e-02   p_cons 3.634000e-02   p_joint 1.444000e-02

Joint ci ratio: 1.123573e-01	ci left: 1.876505e-02	ci right 2.101506e-02	k: 1192	n:60000
Cons ci ratio: 8.214389e-02	ci left: 3.506260e-02	ci right 3.808244e-02	k: 2193	n:60000
KS ci ratio: 5.812300e-02	ci left: 6.841486e-02	ci right 7.252681e-02	k: 4227	n:60000
EARS2   60000 perm   12 sec   (4907 perm/sec)   p_kst 7.045000e-02   p_cons 3.655000e-02   p_joint 1.986667e-02

Joint ci ratio: 1.308580e-01	ci left: 1.182829e-02	ci right 1.349818e-02	k: 885	n:70000
Cons ci ratio: 7.572361e-02	ci left: 3.547348e-02	ci right 3.827936e-02	k: 2580	n:70000
KS ci ratio: 5.381540e-02	ci left: 6.855791e-02	ci right 7.236350e-02	k: 4931	n:70000
EARS2   70000 perm   15 sec   (4802 perm/sec)   p_kst 7.044286e-02   p_cons 3.685714e-02   p_joint 1.264286e-02

Joint ci ratio: 1.015438e-01	ci left: 1.735808e-02	ci right 1.922708e-02	k: 1462	n:80000
Cons ci ratio: 7.059375e-02	ci left: 3.580083e-02	ci right 3.843287e-02	k: 2968	n:80000
KS ci ratio: 5.006590e-02	ci left: 6.939027e-02	ci right 7.296590e-02	k: 5693	n:80000
EARS2   80000 perm   17 sec   (4709 perm/sec)   p_kst 7.116250e-02   p_cons 3.710000e-02   p_joint 1.827500e-02

Joint ci ratio: 1.143504e-01	ci left: 1.215135e-02	ci right 1.363585e-02	k: 1159	n:90000
Cons ci ratio: 6.697538e-02	ci left: 3.543727e-02	ci right 3.790382e-02	k: 3299	n:90000
KS ci ratio: 4.727316e-02	ci left: 6.929743e-02	ci right 7.266362e-02	k: 6387	n:90000
EARS2   90000 perm   19 sec   (4622 perm/sec)   p_kst 7.096667e-02   p_cons 3.665556e-02   p_joint 1.287778e-02

Joint ci ratio: 1.090793e-01	ci left: 1.205406e-02	ci right 1.345442e-02	k: 1274	n:100000
Cons ci ratio: 6.351748e-02	ci left: 3.552339e-02	ci right 3.786358e-02	k: 3668	n:100000
KS ci ratio: 4.475158e-02	ci left: 6.966308e-02	ci right 7.286184e-02	k: 7125	n:100000
EARS2   100000 perm   22 sec   (4533 perm/sec)   p_kst 7.125000e-02   p_cons 3.668000e-02   p_joint 1.274000e-02

Joint ci ratio: 1.039093e-01	ci left: 1.210860e-02	ci right 1.344454e-02	k: 1404	n:110000
Cons ci ratio: 6.058416e-02	ci left: 3.555176e-02	ci right 3.778185e-02	k: 4032	n:110000
KS ci ratio: 4.266487e-02	ci left: 6.975010e-02	ci right 7.279982e-02	k: 7839	n:110000
EARS2   110000 perm   25 sec   (4452 perm/sec)   p_kst 7.126364e-02   p_cons 3.665455e-02   p_joint 1.276364e-02

Joint ci ratio: 1.019647e-01	ci left: 1.154591e-02	ci right 1.279450e-02	k: 1459	n:120000
Cons ci ratio: 5.794779e-02	ci left: 3.566786e-02	ci right 3.780460e-02	k: 4407	n:120000
KS ci ratio: 4.090191e-02	ci left: 6.964391e-02	ci right 7.256019e-02	k: 8531	n:120000
EARS2   120000 perm   27 sec   (4376 perm/sec)   p_kst 7.109167e-02   p_cons 3.672500e-02   p_joint 1.215833e-02

Joint ci ratio: 9.594790e-02	ci left: 1.206830e-02	ci right 1.329204e-02	k: 1647	n:130000
Cons ci ratio: 5.578571e-02	ci left: 3.557057e-02	ci right 3.761940e-02	k: 4756	n:130000
KS ci ratio: 3.934084e-02	ci left: 6.955629e-02	ci right 7.235519e-02	k: 9223	n:130000
EARS2   130000 perm   30 sec   (4306 perm/sec)   p_kst 7.094615e-02   p_cons 3.658462e-02   p_joint 1.266923e-02

Outputting figure to mutsig2_images.part000000000054/EARS2.2_1608_130000_0.070946_0.036585_0.012669.png
                gene_name: EARS2
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 86 percent done.
EBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
Cons ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
KS ci ratio: 1.888769e-02	ci left: 8.037956e-01	ci right 8.192225e-01	k: 8116	n:10000
EBP   10000 perm   1 sec   (6808 perm/sec)   p_kst 8.116000e-01   p_cons 5.143000e-01   p_joint 8.826000e-01

Outputting figure to mutsig2_images.part000000000054/EBP.2_709_10000_0.8116_0.5143_0.8826.png
                gene_name: EBP
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 88 percent done.
ECHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
Cons ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
KS ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
ECHDC1   10000 perm   2 sec   (6618 perm/sec)   p_kst 4.250000e-02   p_cons 4.141000e-01   p_joint 2.648000e-01

Joint ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
Cons ci ratio: 3.274127e-02	ci left: 4.106030e-01	ci right 4.243210e-01	k: 8349	n:20000
KS ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
ECHDC1   20000 perm   3 sec   (5863 perm/sec)   p_kst 4.030000e-02   p_cons 4.174500e-01   p_joint 1.135500e-01

Joint ci ratio: 3.379672e-02	ci left: 3.043372e-01	ci right 3.148331e-01	k: 9287	n:30000
Cons ci ratio: 2.683773e-02	ci left: 4.099817e-01	ci right 4.211680e-01	k: 12467	n:30000
KS ci ratio: 1.112595e-01	ci left: 3.751855e-02	ci right 4.197115e-02	k: 1191	n:30000
ECHDC1   30000 perm   5 sec   (5562 perm/sec)   p_kst 3.970000e-02   p_cons 4.155667e-01   p_joint 3.095667e-01

Joint ci ratio: 3.723100e-02	ci left: 2.129438e-01	ci right 2.210473e-01	k: 8679	n:40000
Cons ci ratio: 2.202466e-02	ci left: 4.370501e-01	ci right 4.468083e-01	k: 17677	n:40000
KS ci ratio: 9.671361e-02	ci left: 3.753892e-02	ci right 4.137831e-02	k: 1577	n:40000
ECHDC1   40000 perm   7 sec   (5380 perm/sec)   p_kst 3.942500e-02   p_cons 4.419250e-01   p_joint 2.169750e-01

Outputting figure to mutsig2_images.part000000000054/ECHDC1.2_948_40000_0.039425_0.44193_0.21698.png
                gene_name: ECHDC1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 90 percent done.
ECHDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
Cons ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
KS ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
ECHDC3   10000 perm   1 sec   (6706 perm/sec)   p_kst 4.330000e-01   p_cons 9.076000e-01   p_joint 7.632000e-01

Outputting figure to mutsig2_images.part000000000054/ECHDC3.2_932_10000_0.433_0.9076_0.7632.png
                gene_name: ECHDC3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 92 percent done.
EDA2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
Cons ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
KS ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
EDA2R   10000 perm   1 sec   (6712 perm/sec)   p_kst 1.728000e-01   p_cons 4.811000e-01   p_joint 9.780000e-01

Outputting figure to mutsig2_images.part000000000054/EDA2R.2_914_10000_0.1728_0.4811_0.978.png
                gene_name: EDA2R
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 94 percent done.
EEF1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.714091e-03	ci left: 9.589035e-01	ci right 9.664239e-01	k: 9628	n:10000
Cons ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
KS ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
EEF1A1   10000 perm   2 sec   (6403 perm/sec)   p_kst 5.974000e-01   p_cons 6.552000e-01   p_joint 9.628000e-01

Outputting figure to mutsig2_images.part000000000054/EEF1A1.2_1417_10000_0.5974_0.6552_0.9628.png
                gene_name: EEF1A1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 96 percent done.
EEF1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
Cons ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
KS ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
EEF1G   10000 perm   2 sec   (6563 perm/sec)   p_kst 3.502000e-01   p_cons 7.624000e-01   p_joint 5.160000e-01

Outputting figure to mutsig2_images.part000000000054/EEF1G.2_1354_10000_0.3502_0.7624_0.516.png
                gene_name: EEF1G
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 98 percent done.
EEF2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
Cons ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
EEF2K   10000 perm   2 sec   (6050 perm/sec)   p_kst 2.709000e-01   p_cons 1.510000e-02   p_joint 1.665000e-01

Joint ci ratio: 1.617601e-02	ci left: 7.398563e-01	ci right 7.519721e-01	k: 14919	n:20000
Cons ci ratio: 2.187629e-01	ci left: 1.407013e-02	ci right 1.757269e-02	k: 315	n:20000
KS ci ratio: 4.561772e-02	ci left: 2.634589e-01	ci right 2.758082e-01	k: 5392	n:20000
EEF2K   20000 perm   4 sec   (5382 perm/sec)   p_kst 2.696000e-01   p_cons 1.575000e-02   p_joint 7.459500e-01

Joint ci ratio: 2.488835e-02	ci left: 4.469557e-01	ci right 4.582535e-01	k: 13578	n:30000
Cons ci ratio: 1.769217e-01	ci left: 1.467425e-02	ci right 1.755390e-02	k: 482	n:30000
KS ci ratio: 3.718542e-02	ci left: 2.652471e-01	ci right 2.753308e-01	k: 8108	n:30000
EEF2K   30000 perm   6 sec   (5130 perm/sec)   p_kst 2.702667e-01   p_cons 1.606667e-02   p_joint 4.526000e-01

Joint ci ratio: 2.833373e-02	ci left: 3.190405e-01	ci right 3.282351e-01	k: 12945	n:40000
Cons ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
KS ci ratio: 3.226080e-02	ci left: 2.652308e-01	ci right 2.739527e-01	k: 10783	n:40000
EEF2K   40000 perm   8 sec   (4957 perm/sec)   p_kst 2.695750e-01   p_cons 1.527500e-02   p_joint 3.236250e-01

Joint ci ratio: 1.924933e-02	ci left: 4.489893e-01	ci right 4.577361e-01	k: 22668	n:50000
Cons ci ratio: 1.393488e-01	ci left: 1.449336e-02	ci right 1.668340e-02	k: 778	n:50000
KS ci ratio: 2.891368e-02	ci left: 2.648977e-01	ci right 2.726892e-01	k: 13439	n:50000
EEF2K   50000 perm   10 sec   (4834 perm/sec)   p_kst 2.687800e-01   p_cons 1.556000e-02   p_joint 4.533600e-01

Joint ci ratio: 9.687338e-03	ci left: 7.282691e-01	ci right 7.353751e-01	k: 43910	n:60000
Cons ci ratio: 1.283847e-01	ci left: 1.431689e-02	ci right 1.629706e-02	k: 917	n:60000
KS ci ratio: 2.642584e-02	ci left: 2.647743e-01	ci right 2.718815e-01	k: 16099	n:60000
EEF2K   60000 perm   13 sec   (4723 perm/sec)   p_kst 2.683167e-01   p_cons 1.528333e-02   p_joint 7.318333e-01

Joint ci ratio: 1.536184e-02	ci left: 4.782064e-01	ci right 4.856237e-01	k: 33734	n:70000
Cons ci ratio: 1.188613e-01	ci left: 1.438985e-02	ci right 1.622208e-02	k: 1070	n:70000
KS ci ratio: 2.449707e-02	ci left: 2.645364e-01	ci right 2.711114e-01	k: 18747	n:70000
EEF2K   70000 perm   15 sec   (4630 perm/sec)   p_kst 2.678143e-01   p_cons 1.528571e-02   p_joint 4.819143e-01

Joint ci ratio: 1.436978e-02	ci left: 4.784445e-01	ci right 4.853818e-01	k: 38553	n:80000
Cons ci ratio: 1.109547e-01	ci left: 1.450944e-02	ci right 1.622597e-02	k: 1228	n:80000
KS ci ratio: 2.287430e-02	ci left: 2.654436e-01	ci right 2.715982e-01	k: 21481	n:80000
EEF2K   80000 perm   18 sec   (4539 perm/sec)   p_kst 2.685125e-01   p_cons 1.535000e-02   p_joint 4.819125e-01

Joint ci ratio: 7.306146e-03	ci left: 7.590253e-01	ci right 7.646022e-01	k: 68564	n:90000
Cons ci ratio: 1.046332e-01	ci left: 1.455148e-02	ci right 1.616886e-02	k: 1381	n:90000
KS ci ratio: 2.156930e-02	ci left: 2.655623e-01	ci right 2.713638e-01	k: 24161	n:90000
EEF2K   90000 perm   20 sec   (4458 perm/sec)   p_kst 2.684556e-01   p_cons 1.534444e-02   p_joint 7.618222e-01

Joint ci ratio: 6.930306e-03	ci left: 7.592175e-01	ci right 7.645073e-01	k: 76187	n:100000
Cons ci ratio: 9.840674e-02	ci left: 1.485077e-02	ci right 1.639751e-02	k: 1561	n:100000
KS ci ratio: 2.047269e-02	ci left: 2.655157e-01	ci right 2.710177e-01	k: 26826	n:100000
EEF2K   100000 perm   23 sec   (4380 perm/sec)   p_kst 2.682600e-01   p_cons 1.561000e-02   p_joint 7.618700e-01

Outputting figure to mutsig2_images.part000000000054/EEF2K.2_2246_100000_0.26826_0.01561_0.76187.png
                gene_name: EEF2K
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000054
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 54 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4421906: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000055> was used as the working directory.
Started at Wed Oct 24 17:41:28 2012
Results reported at Wed Oct 24 20:42:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000055.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000055.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 55  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000055.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10879.12 sec.
    Max Memory :      5244 MB
    Max Swap   :      7988 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
55
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 55
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 55: processing genes 4886 - 4976
Calculating significance of each gene.
Using projection method.
4886	EFCAB5	2.261507e-01
4887	EFCAB6	1
4888	EFCAB7	4.400216e-01
4889	EFEMP1	9.663765e-01
4890	EFEMP2	4.792354e-01
4891	EFHA1	1
4892	EFHA2	2.655105e-01
4893	EFHB	1.608630e-02
4894	EFHC1	1
4895	EFHC2	8.787789e-01
4896	EFHD1	6.010877e-01
4897	EFHD2	1
4898	EFNA1	6.030152e-01
4899	EFNA2	6.758220e-01
4900	EFNA3	6.652952e-01
4901	EFNA4	1
4902	EFNA5	1
4903	EFNB1	6.190598e-01
4904	EFNB2	8.430268e-01
4905	EFNB3	1
4906	EFR3A	9.593759e-01
4907	EFS	7.583384e-01
4908	EFTUD1	1
4909	EFTUD2	6.820597e-01
4910	EGF	7.465884e-01
4911	EGFL6	8.470613e-02
4912	EGFL7	1
4913	EGFL8	8.179783e-01
4914	EGFLAM	9.781719e-01
In gene EGFR the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 4009    n = 1	mu =   5.69e-07
    LUAD-75-6212-TP	categ 6	N = 4009    n = 1	mu =   2.01e-07
4915	EGFR	1.669874e-03
4916	EGLN1	1
4917	EGLN2	5.997982e-01
4918	EGLN3	1.455793e-01
4919	EGR1	7.884645e-01
4920	EGR2	7.879393e-01
4921	EGR3	8.563028e-01
4922	EGR4	5.332469e-01
4923	EHBP1	3.165479e-01
4924	EHBP1L1	9.484714e-01
4925	EHD1	9.591454e-01
4926	EHD2	8.814252e-01
4927	EHD3	9.440726e-01
4928	EHD4	8.866140e-01
4929	EHF	6.422335e-02
4930	EHHADH	1.111858e-01
4931	EHMT1	7.436897e-01
4932	EHMT2	9.994862e-01
4933	EI24	1
4934	EID1	1
4935	EID2	1
4936	EID2B	1
4937	EID3	1.981553e-01
4938	EIF1	3.743663e-01
4939	EIF1AD	4.222441e-01
4940	EIF1AX	4.953318e-01
4941	EIF1AY	1
4942	EIF1B	4.024141e-01
4943	EIF2A	1
4944	EIF2AK1	7.938771e-02
4945	EIF2AK2	3.013855e-01
4946	EIF2AK3	7.977351e-01
4947	EIF2AK4	9.809688e-01
4948	EIF2B1	6.348761e-01
4949	EIF2B2	8.422223e-01
4950	EIF2B3	9.109837e-01
4951	EIF2B4	4.069600e-01
4952	EIF2B5	9.904690e-01
4953	EIF2C1	6.836948e-01
4954	EIF2C2	6.436525e-01
4955	EIF2C3	8.574333e-01
4956	EIF2C4	9.924452e-01
4957	EIF2S1	1
4958	EIF2S2	1
4959	EIF2S3	5.985750e-01
4960	EIF3A	9.532094e-01
4961	EIF3B	9.571577e-01
4962	EIF3D	1
4963	EIF3E	1
4964	EIF3F	1
4965	EIF3G	1
4966	EIF3H	2.380661e-01
4967	EIF3I	9.114262e-01
4968	EIF3J	1
4969	EIF3K	5.939781e-01
4970	EIF3L	9.217919e-01
4971	EIF3M	1
4972	EIF4A1	7.296734e-01
4973	EIF4A2	2.344908e-01
4974	EIF4A3	1
4975	EIF4B	2.471716e-01
4976	EIF4E	1.029805e-01
Done

Running MutSig 2:
Scatter job 55: processing genes 4886 - 4976
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
EGFR   10000 perm   3 sec   (3276 perm/sec)   p_kst 1.000000e-04   p_cons 8.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
EGFR   20000 perm   9 sec   (2286 perm/sec)   p_kst 5.000000e-05   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
EGFR   30000 perm   12 sec   (2547 perm/sec)   p_kst 3.333333e-05   p_cons 7.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
EGFR   40000 perm   15 sec   (2712 perm/sec)   p_kst 2.500000e-05   p_cons 9.000000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
EGFR   50000 perm   18 sec   (2842 perm/sec)   p_kst 2.000000e-05   p_cons 9.400000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
EGFR   60000 perm   20 sec   (2935 perm/sec)   p_kst 1.666667e-05   p_cons 9.166667e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
EGFR   70000 perm   23 sec   (2993 perm/sec)   p_kst 1.428571e-05   p_cons 9.142857e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 4.436334e-01	ci left: 7.596623e-04	ci right 1.202815e-03	k: 77	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
EGFR   80000 perm   26 sec   (3032 perm/sec)   p_kst 1.250000e-05   p_cons 9.625000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 3.977989e-01	ci left: 8.640862e-04	ci right 1.302429e-03	k: 96	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
EGFR   90000 perm   29 sec   (3058 perm/sec)   p_kst 1.111111e-05   p_cons 1.066667e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.669305e-01	ci left: 9.313678e-04	ci right 1.358416e-03	k: 113	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
EGFR   100000 perm   33 sec   (3070 perm/sec)   p_kst 1.000000e-05   p_cons 1.130000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.518263e-01	ci left: 9.294020e-04	ci right 1.334005e-03	k: 123	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
EGFR   110000 perm   36 sec   (3072 perm/sec)   p_kst 9.090909e-06   p_cons 1.118182e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.347156e-01	ci left: 9.509533e-04	ci right 1.340467e-03	k: 136	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
EGFR   120000 perm   39 sec   (3067 perm/sec)   p_kst 8.333333e-06   p_cons 1.133333e-03   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 3.209536e-01	ci left: 9.625181e-04	ci right 1.337229e-03	k: 148	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
EGFR   130000 perm   42 sec   (3059 perm/sec)   p_kst 7.692308e-06   p_cons 1.138462e-03   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 3.136752e-01	ci left: 9.397836e-04	ci right 1.295684e-03	k: 155	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
EGFR   140000 perm   46 sec   (3048 perm/sec)   p_kst 7.142857e-06   p_cons 1.107143e-03   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 3.031688e-01	ci left: 9.447914e-04	ci right 1.288295e-03	k: 166	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
EGFR   150000 perm   49 sec   (3033 perm/sec)   p_kst 6.666667e-06   p_cons 1.106667e-03   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.944813e-01	ci left: 9.435575e-04	ci right 1.274948e-03	k: 176	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
EGFR   160000 perm   53 sec   (3013 perm/sec)   p_kst 6.250000e-06   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.834810e-01	ci left: 9.644418e-04	ci right 1.288252e-03	k: 190	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
EGFR   170000 perm   57 sec   (2994 perm/sec)   p_kst 5.882353e-06   p_cons 1.117647e-03   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.756547e-01	ci left: 9.676897e-04	ci right 1.282066e-03	k: 201	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
EGFR   180000 perm   61 sec   (2972 perm/sec)   p_kst 5.555556e-06   p_cons 1.116667e-03   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.703555e-01	ci left: 9.559813e-04	ci right 1.259571e-03	k: 209	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
EGFR   190000 perm   64 sec   (2949 perm/sec)   p_kst 5.263158e-06   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.635414e-01	ci left: 9.595024e-04	ci right 1.255264e-03	k: 220	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
EGFR   200000 perm   68 sec   (2927 perm/sec)   p_kst 5.000000e-06   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.566646e-01	ci left: 9.672302e-04	ci right 1.256348e-03	k: 232	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
EGFR   210000 perm   72 sec   (2904 perm/sec)   p_kst 4.761905e-06   p_cons 1.104762e-03   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.513286e-01	ci left: 9.658264e-04	ci right 1.247584e-03	k: 242	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
EGFR   220000 perm   76 sec   (2883 perm/sec)   p_kst 4.545455e-06   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.463122e-01	ci left: 9.646013e-04	ci right 1.239525e-03	k: 252	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
EGFR   230000 perm   80 sec   (2858 perm/sec)   p_kst 4.347826e-06   p_cons 1.095652e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.402169e-01	ci left: 9.752757e-04	ci right 1.245339e-03	k: 265	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
EGFR   240000 perm   85 sec   (2835 perm/sec)   p_kst 4.166667e-06   p_cons 1.104167e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.345528e-01	ci left: 9.851729e-04	ci right 1.250611e-03	k: 278	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
EGFR   250000 perm   89 sec   (2803 perm/sec)   p_kst 4.000000e-06   p_cons 1.112000e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.284893e-01	ci left: 1.001629e-03	ci right 1.263542e-03	k: 293	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
EGFR   260000 perm   94 sec   (2775 perm/sec)   p_kst 3.846154e-06   p_cons 1.126923e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.232349e-01	ci left: 1.013451e-03	ci right 1.271523e-03	k: 307	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
EGFR   270000 perm   98 sec   (2753 perm/sec)   p_kst 3.703704e-06   p_cons 1.137037e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.176514e-01	ci left: 1.031246e-03	ci right 1.286403e-03	k: 323	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
EGFR   280000 perm   102 sec   (2733 perm/sec)   p_kst 3.571429e-06   p_cons 1.153571e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.121547e-01	ci left: 1.051153e-03	ci right 1.303813e-03	k: 340	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
EGFR   290000 perm   107 sec   (2712 perm/sec)   p_kst 3.448276e-06   p_cons 1.172414e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.106186e-01	ci left: 1.031898e-03	ci right 1.277902e-03	k: 345	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
EGFR   300000 perm   112 sec   (2689 perm/sec)   p_kst 3.333333e-06   p_cons 1.150000e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.079325e-01	ci left: 1.026121e-03	ci right 1.267231e-03	k: 354	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
EGFR   310000 perm   116 sec   (2667 perm/sec)   p_kst 3.225806e-06   p_cons 1.141935e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.053466e-01	ci left: 1.020724e-03	ci right 1.257209e-03	k: 363	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
EGFR   320000 perm   121 sec   (2646 perm/sec)   p_kst 3.125000e-06   p_cons 1.134375e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.009756e-01	ci left: 1.035813e-03	ci right 1.270059e-03	k: 379	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
EGFR   330000 perm   126 sec   (2624 perm/sec)   p_kst 3.030303e-06   p_cons 1.148485e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.981286e-01	ci left: 1.036084e-03	ci right 1.266671e-03	k: 390	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
EGFR   340000 perm   131 sec   (2601 perm/sec)   p_kst 2.941176e-06   p_cons 1.147059e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.958877e-01	ci left: 1.030927e-03	ci right 1.257462e-03	k: 399	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
EGFR   350000 perm   136 sec   (2579 perm/sec)   p_kst 2.857143e-06   p_cons 1.140000e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.941970e-01	ci left: 1.020785e-03	ci right 1.242926e-03	k: 406	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
EGFR   360000 perm   141 sec   (2557 perm/sec)   p_kst 2.777778e-06   p_cons 1.127778e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.923170e-01	ci left: 1.013771e-03	ci right 1.232001e-03	k: 414	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
EGFR   370000 perm   146 sec   (2536 perm/sec)   p_kst 2.702703e-06   p_cons 1.118919e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.900413e-01	ci left: 1.012149e-03	ci right 1.227154e-03	k: 424	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
EGFR   380000 perm   151 sec   (2514 perm/sec)   p_kst 2.631579e-06   p_cons 1.115789e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.867730e-01	ci left: 1.022845e-03	ci right 1.235961e-03	k: 439	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
EGFR   390000 perm   156 sec   (2493 perm/sec)   p_kst 2.564103e-06   p_cons 1.125641e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.846864e-01	ci left: 1.021111e-03	ci right 1.231223e-03	k: 449	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
EGFR   400000 perm   162 sec   (2472 perm/sec)   p_kst 2.500000e-06   p_cons 1.122500e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.824697e-01	ci left: 1.021802e-03	ci right 1.229254e-03	k: 460	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
EGFR   410000 perm   167 sec   (2452 perm/sec)   p_kst 2.439024e-06   p_cons 1.121951e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.799497e-01	ci left: 1.027022e-03	ci right 1.232341e-03	k: 473	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
EGFR   420000 perm   173 sec   (2432 perm/sec)   p_kst 2.380952e-06   p_cons 1.126190e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.782658e-01	ci left: 1.023130e-03	ci right 1.225549e-03	k: 482	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
EGFR   430000 perm   178 sec   (2412 perm/sec)   p_kst 2.325581e-06   p_cons 1.120930e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.755598e-01	ci left: 1.032459e-03	ci right 1.233294e-03	k: 497	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
EGFR   440000 perm   184 sec   (2392 perm/sec)   p_kst 2.272727e-06   p_cons 1.129545e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.723021e-01	ci left: 1.049900e-03	ci right 1.249945e-03	k: 516	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
EGFR   450000 perm   190 sec   (2372 perm/sec)   p_kst 2.222222e-06   p_cons 1.146667e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.708222e-01	ci left: 1.045801e-03	ci right 1.243177e-03	k: 525	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
EGFR   460000 perm   195 sec   (2354 perm/sec)   p_kst 2.173913e-06   p_cons 1.141304e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.693797e-01	ci left: 1.041884e-03	ci right 1.236690e-03	k: 534	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
EGFR   470000 perm   201 sec   (2336 perm/sec)   p_kst 2.127660e-06   p_cons 1.136170e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.678188e-01	ci left: 1.040132e-03	ci right 1.232638e-03	k: 544	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
EGFR   480000 perm   207 sec   (2319 perm/sec)   p_kst 2.083333e-06   p_cons 1.133333e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.655554e-01	ci left: 1.048240e-03	ci right 1.239369e-03	k: 559	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
EGFR   490000 perm   213 sec   (2302 perm/sec)   p_kst 2.040816e-06   p_cons 1.140816e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.630974e-01	ci left: 1.059878e-03	ci right 1.249978e-03	k: 576	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
EGFR   500000 perm   219 sec   (2286 perm/sec)   p_kst 2.000000e-06   p_cons 1.152000e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.610173e-01	ci left: 1.067315e-03	ci right 1.256072e-03	k: 591	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
EGFR   510000 perm   225 sec   (2270 perm/sec)   p_kst 1.960784e-06   p_cons 1.158824e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.595420e-01	ci left: 1.067095e-03	ci right 1.253919e-03	k: 602	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
EGFR   520000 perm   231 sec   (2254 perm/sec)   p_kst 1.923077e-06   p_cons 1.157692e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.574659e-01	ci left: 1.075953e-03	ci right 1.261644e-03	k: 618	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
EGFR   530000 perm   237 sec   (2237 perm/sec)   p_kst 1.886792e-06   p_cons 1.166038e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.559614e-01	ci left: 1.077379e-03	ci right 1.261373e-03	k: 630	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
EGFR   540000 perm   243 sec   (2221 perm/sec)   p_kst 1.851852e-06   p_cons 1.166667e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.548613e-01	ci left: 1.073517e-03	ci right 1.255439e-03	k: 639	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
EGFR   550000 perm   250 sec   (2204 perm/sec)   p_kst 1.818182e-06   p_cons 1.161818e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.539029e-01	ci left: 1.068081e-03	ci right 1.247858e-03	k: 647	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
EGFR   560000 perm   256 sec   (2188 perm/sec)   p_kst 1.785714e-06   p_cons 1.155357e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.522665e-01	ci left: 1.072964e-03	ci right 1.251467e-03	k: 661	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
EGFR   570000 perm   263 sec   (2171 perm/sec)   p_kst 1.754386e-06   p_cons 1.159649e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.516956e-01	ci left: 1.062757e-03	ci right 1.238839e-03	k: 666	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
EGFR   580000 perm   269 sec   (2156 perm/sec)   p_kst 1.724138e-06   p_cons 1.148276e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.490364e-01	ci left: 1.083892e-03	ci right 1.260048e-03	k: 690	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
EGFR   590000 perm   276 sec   (2140 perm/sec)   p_kst 1.694915e-06   p_cons 1.169492e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.475489e-01	ci left: 1.088295e-03	ci right 1.263245e-03	k: 704	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
EGFR   600000 perm   282 sec   (2124 perm/sec)   p_kst 1.666667e-06   p_cons 1.173333e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.461050e-01	ci left: 1.092562e-03	ci right 1.266329e-03	k: 718	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
EGFR   610000 perm   289 sec   (2109 perm/sec)   p_kst 1.639344e-06   p_cons 1.177049e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.449008e-01	ci left: 1.093590e-03	ci right 1.265964e-03	k: 730	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
EGFR   620000 perm   296 sec   (2094 perm/sec)   p_kst 1.612903e-06   p_cons 1.177419e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.431484e-01	ci left: 1.103774e-03	ci right 1.275469e-03	k: 748	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
EGFR   630000 perm   303 sec   (2079 perm/sec)   p_kst 1.587302e-06   p_cons 1.187302e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.422025e-01	ci left: 1.101595e-03	ci right 1.271722e-03	k: 758	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
EGFR   640000 perm   310 sec   (2064 perm/sec)   p_kst 1.562500e-06   p_cons 1.184375e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.412751e-01	ci left: 1.099486e-03	ci right 1.268087e-03	k: 768	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
EGFR   650000 perm   317 sec   (2050 perm/sec)   p_kst 1.538462e-06   p_cons 1.181538e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.404558e-01	ci left: 1.095983e-03	ci right 1.262991e-03	k: 777	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
EGFR   660000 perm   324 sec   (2036 perm/sec)   p_kst 1.515152e-06   p_cons 1.177273e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.398287e-01	ci left: 1.089706e-03	ci right 1.254954e-03	k: 784	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
EGFR   670000 perm   331 sec   (2022 perm/sec)   p_kst 1.492537e-06   p_cons 1.170149e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.386849e-01	ci left: 1.092133e-03	ci right 1.256282e-03	k: 797	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
EGFR   680000 perm   339 sec   (2008 perm/sec)   p_kst 1.470588e-06   p_cons 1.172059e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.376538e-01	ci left: 1.093095e-03	ci right 1.256067e-03	k: 809	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
EGFR   690000 perm   346 sec   (1993 perm/sec)   p_kst 1.449275e-06   p_cons 1.172464e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.372316e-01	ci left: 1.084376e-03	ci right 1.245512e-03	k: 814	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
EGFR   700000 perm   354 sec   (1980 perm/sec)   p_kst 1.428571e-06   p_cons 1.162857e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.361499e-01	ci left: 1.086787e-03	ci right 1.246905e-03	k: 827	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
EGFR   710000 perm   361 sec   (1966 perm/sec)   p_kst 1.408451e-06   p_cons 1.164789e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.351738e-01	ci left: 1.087794e-03	ci right 1.246819e-03	k: 839	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
EGFR   720000 perm   369 sec   (1952 perm/sec)   p_kst 1.388889e-06   p_cons 1.165278e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.343765e-01	ci left: 1.086129e-03	ci right 1.243900e-03	k: 849	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
EGFR   730000 perm   376 sec   (1939 perm/sec)   p_kst 1.369863e-06   p_cons 1.163014e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.332831e-01	ci left: 1.089737e-03	ci right 1.246642e-03	k: 863	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
EGFR   740000 perm   384 sec   (1926 perm/sec)   p_kst 1.351351e-06   p_cons 1.166216e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.325946e-01	ci left: 1.086808e-03	ci right 1.242419e-03	k: 872	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
EGFR   750000 perm   392 sec   (1914 perm/sec)   p_kst 1.333333e-06   p_cons 1.162667e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.321417e-01	ci left: 1.080141e-03	ci right 1.234228e-03	k: 878	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
EGFR   760000 perm   400 sec   (1901 perm/sec)   p_kst 1.315789e-06   p_cons 1.155263e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.308817e-01	ci left: 1.087465e-03	ci right 1.241002e-03	k: 895	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
EGFR   770000 perm   408 sec   (1888 perm/sec)   p_kst 1.298701e-06   p_cons 1.162338e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.300139e-01	ci left: 1.088406e-03	ci right 1.240978e-03	k: 907	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
EGFR   780000 perm   416 sec   (1875 perm/sec)   p_kst 1.282051e-06   p_cons 1.162821e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.292336e-01	ci left: 1.088101e-03	ci right 1.239645e-03	k: 918	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
EGFR   790000 perm   424 sec   (1863 perm/sec)   p_kst 1.265823e-06   p_cons 1.162025e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.279857e-01	ci left: 1.096276e-03	ci right 1.247373e-03	k: 936	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
EGFR   800000 perm   432 sec   (1850 perm/sec)   p_kst 1.250000e-06   p_cons 1.170000e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.269732e-01	ci left: 1.100670e-03	ci right 1.251082e-03	k: 951	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
EGFR   810000 perm   440 sec   (1839 perm/sec)   p_kst 1.234568e-06   p_cons 1.174074e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.263116e-01	ci left: 1.099056e-03	ci right 1.248406e-03	k: 961	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
EGFR   820000 perm   449 sec   (1827 perm/sec)   p_kst 1.219512e-06   p_cons 1.171951e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.256603e-01	ci left: 1.097483e-03	ci right 1.245793e-03	k: 971	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
EGFR   830000 perm   457 sec   (1815 perm/sec)   p_kst 1.204819e-06   p_cons 1.169880e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.248283e-01	ci left: 1.099409e-03	ci right 1.246923e-03	k: 984	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
EGFR   840000 perm   466 sec   (1804 perm/sec)   p_kst 1.190476e-06   p_cons 1.171429e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.240125e-01	ci left: 1.101293e-03	ci right 1.248023e-03	k: 997	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
EGFR   850000 perm   474 sec   (1793 perm/sec)   p_kst 1.176471e-06   p_cons 1.172941e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.235802e-01	ci left: 1.096375e-03	ci right 1.241902e-03	k: 1004	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
EGFR   860000 perm   483 sec   (1782 perm/sec)   p_kst 1.162791e-06   p_cons 1.167442e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.229094e-01	ci left: 1.096026e-03	ci right 1.240661e-03	k: 1015	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
EGFR   870000 perm   491 sec   (1770 perm/sec)   p_kst 1.149425e-06   p_cons 1.166667e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.220118e-01	ci left: 1.100095e-03	ci right 1.244130e-03	k: 1030	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
EGFR   880000 perm   500 sec   (1759 perm/sec)   p_kst 1.136364e-06   p_cons 1.170455e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.214245e-01	ci left: 1.098628e-03	ci right 1.241729e-03	k: 1040	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
EGFR   890000 perm   509 sec   (1748 perm/sec)   p_kst 1.123596e-06   p_cons 1.168539e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.209032e-01	ci left: 1.096118e-03	ci right 1.238235e-03	k: 1049	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
EGFR   900000 perm   518 sec   (1738 perm/sec)   p_kst 1.111111e-06   p_cons 1.165556e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.203885e-01	ci left: 1.093664e-03	ci right 1.234816e-03	k: 1058	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
EGFR   910000 perm   527 sec   (1727 perm/sec)   p_kst 1.098901e-06   p_cons 1.162637e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.198242e-01	ci left: 1.092320e-03	ci right 1.232590e-03	k: 1068	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
EGFR   920000 perm   536 sec   (1717 perm/sec)   p_kst 1.086957e-06   p_cons 1.160870e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.191021e-01	ci left: 1.094135e-03	ci right 1.233733e-03	k: 1081	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
EGFR   930000 perm   545 sec   (1706 perm/sec)   p_kst 1.075269e-06   p_cons 1.162366e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.187190e-01	ci left: 1.089721e-03	ci right 1.228276e-03	k: 1088	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
EGFR   940000 perm   554 sec   (1696 perm/sec)   p_kst 1.063830e-06   p_cons 1.157447e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.180702e-01	ci left: 1.090507e-03	ci right 1.228353e-03	k: 1100	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
EGFR   950000 perm   563 sec   (1686 perm/sec)   p_kst 1.052632e-06   p_cons 1.157895e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.175377e-01	ci left: 1.089258e-03	ci right 1.226281e-03	k: 1110	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
EGFR   960000 perm   573 sec   (1677 perm/sec)   p_kst 1.041667e-06   p_cons 1.156250e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.168560e-01	ci left: 1.091037e-03	ci right 1.227433e-03	k: 1123	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
EGFR   970000 perm   582 sec   (1667 perm/sec)   p_kst 1.030928e-06   p_cons 1.157732e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.162884e-01	ci left: 1.090802e-03	ci right 1.226460e-03	k: 1134	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
EGFR   980000 perm   591 sec   (1657 perm/sec)   p_kst 1.020408e-06   p_cons 1.157143e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.156784e-01	ci left: 1.091553e-03	ci right 1.226544e-03	k: 1146	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
EGFR   990000 perm   601 sec   (1648 perm/sec)   p_kst 1.010101e-06   p_cons 1.157576e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.154275e-01	ci left: 1.085493e-03	ci right 1.219424e-03	k: 1151	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
EGFR   1000000 perm   610 sec   (1638 perm/sec)   p_kst 1.000000e-06   p_cons 1.151000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.149298e-01	ci left: 1.084361e-03	ci right 1.217536e-03	k: 1161	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
EGFR   1010000 perm   620 sec   (1629 perm/sec)   p_kst 9.900990e-07   p_cons 1.149505e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.147330e-01	ci left: 1.077539e-03	ci right 1.209634e-03	k: 1165	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
EGFR   1020000 perm   630 sec   (1619 perm/sec)   p_kst 9.803922e-07   p_cons 1.142157e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.142442e-01	ci left: 1.076508e-03	ci right 1.207877e-03	k: 1175	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
EGFR   1030000 perm   640 sec   (1609 perm/sec)   p_kst 9.708738e-07   p_cons 1.140777e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.135700e-01	ci left: 1.079235e-03	ci right 1.210107e-03	k: 1189	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
EGFR   1040000 perm   650 sec   (1600 perm/sec)   p_kst 9.615385e-07   p_cons 1.143269e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.128139e-01	ci left: 1.083763e-03	ci right 1.214252e-03	k: 1205	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
EGFR   1050000 perm   660 sec   (1591 perm/sec)   p_kst 9.523810e-07   p_cons 1.147619e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.121646e-01	ci left: 1.086375e-03	ci right 1.216375e-03	k: 1219	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
EGFR   1060000 perm   670 sec   (1582 perm/sec)   p_kst 9.433962e-07   p_cons 1.150000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.116624e-01	ci left: 1.086215e-03	ci right 1.215575e-03	k: 1230	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
EGFR   1070000 perm   680 sec   (1573 perm/sec)   p_kst 9.345794e-07   p_cons 1.149533e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.111220e-01	ci left: 1.086959e-03	ci right 1.215741e-03	k: 1242	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
EGFR   1080000 perm   690 sec   (1564 perm/sec)   p_kst 9.259259e-07   p_cons 1.150000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.106336e-01	ci left: 1.086798e-03	ci right 1.214959e-03	k: 1253	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
EGFR   1090000 perm   701 sec   (1556 perm/sec)   p_kst 9.174312e-07   p_cons 1.149541e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.102826e-01	ci left: 1.083990e-03	ci right 1.211387e-03	k: 1261	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
EGFR   1100000 perm   711 sec   (1547 perm/sec)   p_kst 9.090909e-07   p_cons 1.146364e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.098916e-01	ci left: 1.082109e-03	ci right 1.208805e-03	k: 1270	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
EGFR   1110000 perm   721 sec   (1539 perm/sec)   p_kst 9.009009e-07   p_cons 1.144144e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.093338e-01	ci left: 1.083737e-03	ci right 1.209937e-03	k: 1283	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
EGFR   1120000 perm   732 sec   (1530 perm/sec)   p_kst 8.928571e-07   p_cons 1.145536e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.085333e-01	ci left: 1.090502e-03	ci right 1.216502e-03	k: 1302	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
EGFR   1130000 perm   742 sec   (1522 perm/sec)   p_kst 8.849558e-07   p_cons 1.152212e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.080781e-01	ci left: 1.090324e-03	ci right 1.215741e-03	k: 1313	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
EGFR   1140000 perm   753 sec   (1514 perm/sec)   p_kst 8.771930e-07   p_cons 1.151754e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.251025e-01	ci left: 7.996694e-04	ci right 9.072180e-04	k: 980	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
EGFR   1150000 perm   764 sec   (1506 perm/sec)   p_kst 8.695652e-07   p_cons 8.521739e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.247218e-01	ci left: 7.977864e-04	ci right 9.047312e-04	k: 986	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
EGFR   1160000 perm   774 sec   (1498 perm/sec)   p_kst 8.620690e-07   p_cons 8.500000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.240324e-01	ci left: 8.000770e-04	ci right 9.066925e-04	k: 997	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
EGFR   1170000 perm   785 sec   (1490 perm/sec)   p_kst 8.547009e-07   p_cons 8.521368e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.232322e-01	ci left: 8.039730e-04	ci right 9.103660e-04	k: 1010	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
EGFR   1180000 perm   796 sec   (1482 perm/sec)   p_kst 8.474576e-07   p_cons 8.559322e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.228079e-01	ci left: 8.029182e-04	ci right 9.087792e-04	k: 1017	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
EGFR   1190000 perm   807 sec   (1474 perm/sec)   p_kst 8.403361e-07   p_cons 8.546218e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.222090e-01	ci left: 8.043052e-04	ci right 9.097946e-04	k: 1027	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
EGFR   1200000 perm   819 sec   (1466 perm/sec)   p_kst 8.333333e-07   p_cons 8.558333e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.216775e-01	ci left: 8.048692e-04	ci right 9.099404e-04	k: 1036	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
EGFR   1210000 perm   830 sec   (1458 perm/sec)   p_kst 8.264463e-07   p_cons 8.561983e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.210371e-01	ci left: 8.070147e-04	ci right 9.117718e-04	k: 1047	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
EGFR   1220000 perm   841 sec   (1451 perm/sec)   p_kst 8.196721e-07   p_cons 8.581967e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.206923e-01	ci left: 8.051841e-04	ci right 9.093845e-04	k: 1053	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
EGFR   1230000 perm   853 sec   (1443 perm/sec)   p_kst 8.130081e-07   p_cons 8.560976e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.202368e-01	ci left: 8.049479e-04	ci right 9.086967e-04	k: 1061	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
EGFR   1240000 perm   864 sec   (1435 perm/sec)   p_kst 8.064516e-07   p_cons 8.556452e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.199550e-01	ci left: 8.023881e-04	ci right 9.055473e-04	k: 1066	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
EGFR   1250000 perm   876 sec   (1428 perm/sec)   p_kst 8.000000e-07   p_cons 8.528000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.193967e-01	ci left: 8.037189e-04	ci right 9.065343e-04	k: 1076	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
EGFR   1260000 perm   888 sec   (1419 perm/sec)   p_kst 7.936508e-07   p_cons 8.539683e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 9.996029e-02	ci left: 1.148980e-03	ci right 1.270636e-03	k: 1535	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
EGFR   1270000 perm   900 sec   (1411 perm/sec)   p_kst 7.874016e-07   p_cons 1.208661e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 9.957210e-02	ci left: 1.149145e-03	ci right 1.270318e-03	k: 1547	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
EGFR   1280000 perm   912 sec   (1404 perm/sec)   p_kst 7.812500e-07   p_cons 1.208594e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 9.922024e-02	ci left: 1.148552e-03	ci right 1.269209e-03	k: 1558	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
EGFR   1290000 perm   924 sec   (1397 perm/sec)   p_kst 7.751938e-07   p_cons 1.207752e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 9.884057e-02	ci left: 1.148719e-03	ci right 1.268905e-03	k: 1570	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
EGFR   1300000 perm   935 sec   (1390 perm/sec)   p_kst 7.692308e-07   p_cons 1.207692e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 9.852756e-02	ci left: 1.147395e-03	ci right 1.267041e-03	k: 1580	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
EGFR   1310000 perm   947 sec   (1383 perm/sec)   p_kst 7.633588e-07   p_cons 1.206107e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 9.831035e-02	ci left: 1.143875e-03	ci right 1.262876e-03	k: 1587	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
EGFR   1320000 perm   959 sec   (1376 perm/sec)   p_kst 7.575758e-07   p_cons 1.202273e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 9.800234e-02	ci left: 1.142609e-03	ci right 1.261084e-03	k: 1597	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
EGFR   1330000 perm   971 sec   (1370 perm/sec)   p_kst 7.518797e-07   p_cons 1.200752e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 9.763643e-02	ci left: 1.142818e-03	ci right 1.260847e-03	k: 1609	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
EGFR   1340000 perm   983 sec   (1364 perm/sec)   p_kst 7.462687e-07   p_cons 1.200746e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 9.724459e-02	ci left: 1.143748e-03	ci right 1.261372e-03	k: 1622	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
EGFR   1350000 perm   995 sec   (1357 perm/sec)   p_kst 7.407407e-07   p_cons 1.201481e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 9.685742e-02	ci left: 1.144665e-03	ci right 1.261888e-03	k: 1635	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
EGFR   1360000 perm   1007 sec   (1351 perm/sec)   p_kst 7.352941e-07   p_cons 1.202206e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 9.656282e-02	ci left: 1.143432e-03	ci right 1.260153e-03	k: 1645	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
EGFR   1370000 perm   1019 sec   (1344 perm/sec)   p_kst 7.299270e-07   p_cons 1.200730e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 9.632915e-02	ci left: 1.140804e-03	ci right 1.256958e-03	k: 1653	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
EGFR   1380000 perm   1031 sec   (1338 perm/sec)   p_kst 7.246377e-07   p_cons 1.197826e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 9.598160e-02	ci left: 1.141022e-03	ci right 1.256756e-03	k: 1665	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
EGFR   1390000 perm   1044 sec   (1332 perm/sec)   p_kst 7.194245e-07   p_cons 1.197842e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 9.560927e-02	ci left: 1.141935e-03	ci right 1.257287e-03	k: 1678	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
EGFR   1400000 perm   1056 sec   (1326 perm/sec)   p_kst 7.142857e-07   p_cons 1.198571e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 9.538244e-02	ci left: 1.139375e-03	ci right 1.254179e-03	k: 1686	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
EGFR   1410000 perm   1068 sec   (1320 perm/sec)   p_kst 7.092199e-07   p_cons 1.195745e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 9.512912e-02	ci left: 1.137538e-03	ci right 1.251836e-03	k: 1695	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
EGFR   1420000 perm   1081 sec   (1314 perm/sec)   p_kst 7.042254e-07   p_cons 1.193662e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 9.484997e-02	ci left: 1.136410e-03	ci right 1.250241e-03	k: 1705	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
EGFR   1430000 perm   1094 sec   (1308 perm/sec)   p_kst 6.993007e-07   p_cons 1.192308e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 9.449060e-02	ci left: 1.137332e-03	ci right 1.250800e-03	k: 1718	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
EGFR   1440000 perm   1106 sec   (1302 perm/sec)   p_kst 6.944444e-07   p_cons 1.193056e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 9.424430e-02	ci left: 1.135549e-03	ci right 1.248528e-03	k: 1727	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
EGFR   1450000 perm   1119 sec   (1296 perm/sec)   p_kst 6.896552e-07   p_cons 1.191034e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 9.391876e-02	ci left: 1.135797e-03	ci right 1.248389e-03	k: 1739	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
EGFR   1460000 perm   1132 sec   (1290 perm/sec)   p_kst 6.849315e-07   p_cons 1.191096e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 9.356983e-02	ci left: 1.136707e-03	ci right 1.248947e-03	k: 1752	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
EGFR   1470000 perm   1145 sec   (1284 perm/sec)   p_kst 6.802721e-07   p_cons 1.191837e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 9.319835e-02	ci left: 1.138265e-03	ci right 1.250188e-03	k: 1766	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
EGFR   1480000 perm   1158 sec   (1278 perm/sec)   p_kst 6.756757e-07   p_cons 1.193243e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 9.283126e-02	ci left: 1.139803e-03	ci right 1.251412e-03	k: 1780	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
EGFR   1490000 perm   1171 sec   (1272 perm/sec)   p_kst 6.711409e-07   p_cons 1.194631e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 9.254593e-02	ci left: 1.139367e-03	ci right 1.250573e-03	k: 1791	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
EGFR   1500000 perm   1184 sec   (1267 perm/sec)   p_kst 6.666667e-07   p_cons 1.194000e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 9.234017e-02	ci left: 1.136997e-03	ci right 1.247711e-03	k: 1799	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
EGFR   1510000 perm   1197 sec   (1261 perm/sec)   p_kst 6.622517e-07   p_cons 1.191391e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 9.190703e-02	ci left: 1.140444e-03	ci right 1.250944e-03	k: 1816	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
EGFR   1520000 perm   1212 sec   (1255 perm/sec)   p_kst 6.578947e-07   p_cons 1.194737e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 9.157997e-02	ci left: 1.141292e-03	ci right 1.251460e-03	k: 1829	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
EGFR   1530000 perm   1225 sec   (1249 perm/sec)   p_kst 6.535948e-07   p_cons 1.195425e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 9.128118e-02	ci left: 1.141495e-03	ci right 1.251304e-03	k: 1841	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
EGFR   1540000 perm   1238 sec   (1244 perm/sec)   p_kst 6.493506e-07   p_cons 1.195455e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 9.093619e-02	ci left: 1.142957e-03	ci right 1.252469e-03	k: 1855	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
EGFR   1550000 perm   1252 sec   (1238 perm/sec)   p_kst 6.451613e-07   p_cons 1.196774e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 9.049824e-02	ci left: 1.146907e-03	ci right 1.256240e-03	k: 1873	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
EGFR   1560000 perm   1265 sec   (1233 perm/sec)   p_kst 6.410256e-07   p_cons 1.200641e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 9.023383e-02	ci left: 1.146450e-03	ci right 1.255403e-03	k: 1884	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
EGFR   1570000 perm   1279 sec   (1228 perm/sec)   p_kst 6.369427e-07   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 8.987685e-02	ci left: 1.148474e-03	ci right 1.257165e-03	k: 1899	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
EGFR   1580000 perm   1292 sec   (1223 perm/sec)   p_kst 6.329114e-07   p_cons 1.201899e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 8.945395e-02	ci left: 1.152318e-03	ci right 1.260833e-03	k: 1917	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
EGFR   1590000 perm   1305 sec   (1218 perm/sec)   p_kst 6.289308e-07   p_cons 1.205660e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 8.919856e-02	ci left: 1.151837e-03	ci right 1.259981e-03	k: 1928	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
EGFR   1600000 perm   1319 sec   (1213 perm/sec)   p_kst 6.250000e-07   p_cons 1.205000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 8.892241e-02	ci left: 1.151970e-03	ci right 1.259775e-03	k: 1940	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
EGFR   1610000 perm   1333 sec   (1208 perm/sec)   p_kst 6.211180e-07   p_cons 1.204969e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 8.860339e-02	ci left: 1.153310e-03	ci right 1.260832e-03	k: 1954	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
EGFR   1620000 perm   1347 sec   (1203 perm/sec)   p_kst 6.172840e-07   p_cons 1.206173e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 8.822052e-02	ci left: 1.156433e-03	ci right 1.263757e-03	k: 1971	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
EGFR   1630000 perm   1361 sec   (1198 perm/sec)   p_kst 6.134969e-07   p_cons 1.209202e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 8.790897e-02	ci left: 1.157730e-03	ci right 1.264775e-03	k: 1985	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
EGFR   1640000 perm   1376 sec   (1192 perm/sec)   p_kst 6.097561e-07   p_cons 1.210366e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 8.762263e-02	ci left: 1.158420e-03	ci right 1.265162e-03	k: 1998	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
EGFR   1650000 perm   1391 sec   (1186 perm/sec)   p_kst 6.060606e-07   p_cons 1.210909e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 8.746975e-02	ci left: 1.155566e-03	ci right 1.261850e-03	k: 2005	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
EGFR   1660000 perm   1405 sec   (1181 perm/sec)   p_kst 6.024096e-07   p_cons 1.207831e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 8.727427e-02	ci left: 1.153917e-03	ci right 1.259801e-03	k: 2014	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
EGFR   1670000 perm   1419 sec   (1177 perm/sec)   p_kst 5.988024e-07   p_cons 1.205988e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 8.695116e-02	ci left: 1.155783e-03	ci right 1.261425e-03	k: 2029	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
EGFR   1680000 perm   1435 sec   (1171 perm/sec)   p_kst 5.952381e-07   p_cons 1.207738e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 8.665282e-02	ci left: 1.157048e-03	ci right 1.262424e-03	k: 2043	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
EGFR   1690000 perm   1451 sec   (1165 perm/sec)   p_kst 5.917160e-07   p_cons 1.208876e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 8.635753e-02	ci left: 1.158299e-03	ci right 1.263412e-03	k: 2057	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
EGFR   1700000 perm   1466 sec   (1160 perm/sec)   p_kst 5.882353e-07   p_cons 1.210000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 8.610686e-02	ci left: 1.158392e-03	ci right 1.263192e-03	k: 2069	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
EGFR   1710000 perm   1481 sec   (1155 perm/sec)   p_kst 5.847953e-07   p_cons 1.209942e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 8.577590e-02	ci left: 1.160759e-03	ci right 1.265350e-03	k: 2085	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
EGFR   1720000 perm   1496 sec   (1150 perm/sec)   p_kst 5.813953e-07   p_cons 1.212209e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 8.553024e-02	ci left: 1.160838e-03	ci right 1.265121e-03	k: 2097	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
EGFR   1730000 perm   1511 sec   (1145 perm/sec)   p_kst 5.780347e-07   p_cons 1.212139e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 8.540835e-02	ci left: 1.157541e-03	ci right 1.261372e-03	k: 2103	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
EGFR   1740000 perm   1526 sec   (1140 perm/sec)   p_kst 5.747126e-07   p_cons 1.208621e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 8.514569e-02	ci left: 1.158196e-03	ci right 1.261751e-03	k: 2116	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
EGFR   1750000 perm   1541 sec   (1136 perm/sec)   p_kst 5.714286e-07   p_cons 1.209143e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 8.496535e-02	ci left: 1.156621e-03	ci right 1.259805e-03	k: 2125	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
EGFR   1760000 perm   1556 sec   (1131 perm/sec)   p_kst 5.681818e-07   p_cons 1.207386e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 8.480604e-02	ci left: 1.154510e-03	ci right 1.257303e-03	k: 2133	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
EGFR   1770000 perm   1572 sec   (1126 perm/sec)   p_kst 5.649718e-07   p_cons 1.205085e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 8.458833e-02	ci left: 1.154073e-03	ci right 1.256550e-03	k: 2144	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
EGFR   1780000 perm   1587 sec   (1122 perm/sec)   p_kst 5.617978e-07   p_cons 1.204494e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 8.435271e-02	ci left: 1.154188e-03	ci right 1.256376e-03	k: 2156	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
EGFR   1790000 perm   1603 sec   (1116 perm/sec)   p_kst 5.586592e-07   p_cons 1.204469e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 8.419681e-02	ci left: 1.152126e-03	ci right 1.253934e-03	k: 2164	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
EGFR   1800000 perm   1620 sec   (1111 perm/sec)   p_kst 5.555556e-07   p_cons 1.202222e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 8.398375e-02	ci left: 1.151710e-03	ci right 1.253211e-03	k: 2175	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
EGFR   1810000 perm   1635 sec   (1107 perm/sec)   p_kst 5.524862e-07   p_cons 1.201657e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 8.386835e-02	ci left: 1.148610e-03	ci right 1.249692e-03	k: 2181	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
EGFR   1820000 perm   1650 sec   (1103 perm/sec)   p_kst 5.494505e-07   p_cons 1.198352e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 8.361960e-02	ci left: 1.149288e-03	ci right 1.250115e-03	k: 2194	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
EGFR   1830000 perm   1666 sec   (1099 perm/sec)   p_kst 5.464481e-07   p_cons 1.198907e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 8.346772e-02	ci left: 1.147299e-03	ci right 1.247760e-03	k: 2202	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
EGFR   1840000 perm   1681 sec   (1094 perm/sec)   p_kst 5.434783e-07   p_cons 1.196739e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 8.322251e-02	ci left: 1.147978e-03	ci right 1.248189e-03	k: 2215	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
EGFR   1850000 perm   1697 sec   (1090 perm/sec)   p_kst 5.405405e-07   p_cons 1.197297e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 8.296082e-02	ci left: 1.149177e-03	ci right 1.249161e-03	k: 2229	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
EGFR   1860000 perm   1713 sec   (1086 perm/sec)   p_kst 5.376344e-07   p_cons 1.198387e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 8.277547e-02	ci left: 1.148268e-03	ci right 1.247939e-03	k: 2239	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
EGFR   1870000 perm   1729 sec   (1082 perm/sec)   p_kst 5.347594e-07   p_cons 1.197326e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 8.259137e-02	ci left: 1.147369e-03	ci right 1.246731e-03	k: 2249	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
EGFR   1880000 perm   1745 sec   (1078 perm/sec)   p_kst 5.319149e-07   p_cons 1.196277e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 8.239024e-02	ci left: 1.146999e-03	ci right 1.246074e-03	k: 2260	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
EGFR   1890000 perm   1761 sec   (1073 perm/sec)   p_kst 5.291005e-07   p_cons 1.195767e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 8.219057e-02	ci left: 1.146632e-03	ci right 1.245425e-03	k: 2271	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
EGFR   1900000 perm   1778 sec   (1069 perm/sec)   p_kst 5.263158e-07   p_cons 1.195263e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 8.208238e-02	ci left: 1.143706e-03	ci right 1.242110e-03	k: 2277	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
EGFR   1910000 perm   1794 sec   (1064 perm/sec)   p_kst 5.235602e-07   p_cons 1.192147e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 8.183127e-02	ci left: 1.144891e-03	ci right 1.243082e-03	k: 2291	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
EGFR   1920000 perm   1810 sec   (1061 perm/sec)   p_kst 5.208333e-07   p_cons 1.193229e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 8.160016e-02	ci left: 1.145557e-03	ci right 1.243514e-03	k: 2304	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
EGFR   1930000 perm   1827 sec   (1057 perm/sec)   p_kst 5.181347e-07   p_cons 1.193782e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 8.138857e-02	ci left: 1.145712e-03	ci right 1.243416e-03	k: 2316	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
EGFR   1940000 perm   1843 sec   (1053 perm/sec)   p_kst 5.154639e-07   p_cons 1.193814e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 8.117863e-02	ci left: 1.145865e-03	ci right 1.243318e-03	k: 2328	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
EGFR   1950000 perm   1859 sec   (1049 perm/sec)   p_kst 5.128205e-07   p_cons 1.193846e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 8.086661e-02	ci left: 1.149016e-03	ci right 1.246345e-03	k: 2346	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
EGFR   1960000 perm   1875 sec   (1045 perm/sec)   p_kst 5.102041e-07   p_cons 1.196939e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 8.076356e-02	ci left: 1.146168e-03	ci right 1.243125e-03	k: 2352	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
EGFR   1970000 perm   1892 sec   (1041 perm/sec)   p_kst 5.076142e-07   p_cons 1.193909e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 8.055841e-02	ci left: 1.146318e-03	ci right 1.243030e-03	k: 2364	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
EGFR   1980000 perm   1909 sec   (1037 perm/sec)   p_kst 5.050505e-07   p_cons 1.193939e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 8.030408e-02	ci left: 1.147943e-03	ci right 1.244472e-03	k: 2379	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
EGFR   1990000 perm   1925 sec   (1034 perm/sec)   p_kst 5.025126e-07   p_cons 1.195477e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 8.006889e-02	ci left: 1.149063e-03	ci right 1.245390e-03	k: 2393	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
EGFR   2000000 perm   1942 sec   (1030 perm/sec)   p_kst 5.000000e-07   p_cons 1.196500e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 7.991887e-02	ci left: 1.147735e-03	ci right 1.243762e-03	k: 2402	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
EGFR   2010000 perm   1959 sec   (1026 perm/sec)   p_kst 4.975124e-07   p_cons 1.195025e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 7.963757e-02	ci left: 1.150301e-03	ci right 1.246188e-03	k: 2419	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
EGFR   2020000 perm   1976 sec   (1023 perm/sec)   p_kst 4.950495e-07   p_cons 1.197525e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 7.939184e-02	ci left: 1.151876e-03	ci right 1.247585e-03	k: 2434	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
EGFR   2030000 perm   1992 sec   (1019 perm/sec)   p_kst 4.926108e-07   p_cons 1.199015e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 7.913220e-02	ci left: 1.153918e-03	ci right 1.249468e-03	k: 2450	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
EGFR   2040000 perm   2009 sec   (1015 perm/sec)   p_kst 4.901961e-07   p_cons 1.200980e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 7.898737e-02	ci left: 1.152592e-03	ci right 1.247850e-03	k: 2459	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
EGFR   2050000 perm   2027 sec   (1011 perm/sec)   p_kst 4.878049e-07   p_cons 1.199512e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 7.871576e-02	ci left: 1.155087e-03	ci right 1.250208e-03	k: 2476	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
EGFR   2060000 perm   2045 sec   (1008 perm/sec)   p_kst 4.854369e-07   p_cons 1.201942e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 7.847844e-02	ci left: 1.156611e-03	ci right 1.251557e-03	k: 2491	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
EGFR   2070000 perm   2062 sec   (1004 perm/sec)   p_kst 4.830918e-07   p_cons 1.203382e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 7.827452e-02	ci left: 1.157178e-03	ci right 1.251912e-03	k: 2504	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
EGFR   2080000 perm   2079 sec   (1001 perm/sec)   p_kst 4.807692e-07   p_cons 1.203846e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 7.810325e-02	ci left: 1.156801e-03	ci right 1.251288e-03	k: 2515	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
EGFR   2090000 perm   2096 sec   (997 perm/sec)   p_kst 4.784689e-07   p_cons 1.203349e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 7.782524e-02	ci left: 1.159697e-03	ci right 1.254068e-03	k: 2533	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
EGFR   2100000 perm   2114 sec   (993 perm/sec)   p_kst 4.761905e-07   p_cons 1.206190e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 7.764162e-02	ci left: 1.159777e-03	ci right 1.253922e-03	k: 2545	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
EGFR   2110000 perm   2132 sec   (990 perm/sec)   p_kst 4.739336e-07   p_cons 1.206161e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 7.747446e-02	ci left: 1.159395e-03	ci right 1.253297e-03	k: 2556	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
EGFR   2120000 perm   2149 sec   (986 perm/sec)   p_kst 4.716981e-07   p_cons 1.205660e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 7.732344e-02	ci left: 1.158556e-03	ci right 1.252199e-03	k: 2566	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
EGFR   2130000 perm   2167 sec   (983 perm/sec)   p_kst 4.694836e-07   p_cons 1.204695e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 7.715832e-02	ci left: 1.158183e-03	ci right 1.251587e-03	k: 2577	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
EGFR   2140000 perm   2185 sec   (980 perm/sec)   p_kst 4.672897e-07   p_cons 1.204206e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 7.702404e-02	ci left: 1.156901e-03	ci right 1.250032e-03	k: 2586	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
EGFR   2150000 perm   2202 sec   (976 perm/sec)   p_kst 4.651163e-07   p_cons 1.202791e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 7.687564e-02	ci left: 1.156086e-03	ci right 1.248964e-03	k: 2596	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
EGFR   2160000 perm   2220 sec   (973 perm/sec)   p_kst 4.629630e-07   p_cons 1.201852e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 7.675758e-02	ci left: 1.154374e-03	ci right 1.246966e-03	k: 2604	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
EGFR   2170000 perm   2238 sec   (970 perm/sec)   p_kst 4.608295e-07   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 7.659605e-02	ci left: 1.154028e-03	ci right 1.246388e-03	k: 2615	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
EGFR   2180000 perm   2256 sec   (966 perm/sec)   p_kst 4.587156e-07   p_cons 1.199541e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 7.649386e-02	ci left: 1.151893e-03	ci right 1.243954e-03	k: 2622	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
EGFR   2190000 perm   2275 sec   (963 perm/sec)   p_kst 4.566210e-07   p_cons 1.197260e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 7.627602e-02	ci left: 1.153345e-03	ci right 1.245248e-03	k: 2637	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
EGFR   2200000 perm   2293 sec   (959 perm/sec)   p_kst 4.545455e-07   p_cons 1.198636e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 7.608875e-02	ci left: 1.153897e-03	ci right 1.245608e-03	k: 2650	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
EGFR   2210000 perm   2314 sec   (955 perm/sec)   p_kst 4.524887e-07   p_cons 1.199095e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 7.593140e-02	ci left: 1.153560e-03	ci right 1.245046e-03	k: 2661	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
EGFR   2220000 perm   2332 sec   (952 perm/sec)   p_kst 4.504505e-07   p_cons 1.198649e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 7.577502e-02	ci left: 1.153226e-03	ci right 1.244490e-03	k: 2672	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
EGFR   2230000 perm   2350 sec   (949 perm/sec)   p_kst 4.484305e-07   p_cons 1.198206e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 7.567608e-02	ci left: 1.151144e-03	ci right 1.242118e-03	k: 2679	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
EGFR   2240000 perm   2368 sec   (946 perm/sec)   p_kst 4.464286e-07   p_cons 1.195982e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 7.556345e-02	ci left: 1.149516e-03	ci right 1.240220e-03	k: 2687	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
EGFR   2250000 perm   2387 sec   (943 perm/sec)   p_kst 4.444444e-07   p_cons 1.194222e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 7.539534e-02	ci left: 1.149639e-03	ci right 1.240143e-03	k: 2699	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
EGFR   2260000 perm   2406 sec   (939 perm/sec)   p_kst 4.424779e-07   p_cons 1.194248e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 7.525614e-02	ci left: 1.148897e-03	ci right 1.239168e-03	k: 2709	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
EGFR   2270000 perm   2425 sec   (936 perm/sec)   p_kst 4.405286e-07   p_cons 1.193392e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 7.504868e-02	ci left: 1.150313e-03	ci right 1.240435e-03	k: 2724	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
EGFR   2280000 perm   2443 sec   (933 perm/sec)   p_kst 4.385965e-07   p_cons 1.194737e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 7.481559e-02	ci left: 1.152574e-03	ci right 1.242581e-03	k: 2741	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
EGFR   2290000 perm   2462 sec   (930 perm/sec)   p_kst 4.366812e-07   p_cons 1.196943e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 7.467957e-02	ci left: 1.151830e-03	ci right 1.241608e-03	k: 2751	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
EGFR   2300000 perm   2481 sec   (927 perm/sec)   p_kst 4.347826e-07   p_cons 1.196087e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 7.458485e-02	ci left: 1.149817e-03	ci right 1.239320e-03	k: 2758	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
EGFR   2310000 perm   2499 sec   (924 perm/sec)   p_kst 4.329004e-07   p_cons 1.193939e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 7.442318e-02	ci left: 1.149937e-03	ci right 1.239246e-03	k: 2770	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
EGFR   2320000 perm   2518 sec   (921 perm/sec)   p_kst 4.310345e-07   p_cons 1.193966e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 7.427591e-02	ci left: 1.149635e-03	ci right 1.238737e-03	k: 2781	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
EGFR   2330000 perm   2537 sec   (918 perm/sec)   p_kst 4.291845e-07   p_cons 1.193562e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 7.415610e-02	ci left: 1.148497e-03	ci right 1.237360e-03	k: 2790	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
EGFR   2340000 perm   2557 sec   (915 perm/sec)   p_kst 4.273504e-07   p_cons 1.192308e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 7.406336e-02	ci left: 1.146533e-03	ci right 1.235129e-03	k: 2797	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
EGFR   2350000 perm   2576 sec   (912 perm/sec)   p_kst 4.255319e-07   p_cons 1.190213e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 7.395777e-02	ci left: 1.145002e-03	ci right 1.233348e-03	k: 2805	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
EGFR   2360000 perm   2595 sec   (909 perm/sec)   p_kst 4.237288e-07   p_cons 1.188559e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 7.383949e-02	ci left: 1.143898e-03	ci right 1.232012e-03	k: 2814	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
EGFR   2370000 perm   2614 sec   (907 perm/sec)   p_kst 4.219409e-07   p_cons 1.187342e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 7.370872e-02	ci left: 1.143216e-03	ci right 1.231114e-03	k: 2824	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
EGFR   2380000 perm   2634 sec   (904 perm/sec)   p_kst 4.201681e-07   p_cons 1.186555e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 7.352672e-02	ci left: 1.144182e-03	ci right 1.231929e-03	k: 2838	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
EGFR   2390000 perm   2653 sec   (901 perm/sec)   p_kst 4.184100e-07   p_cons 1.187448e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 7.334606e-02	ci left: 1.145141e-03	ci right 1.232736e-03	k: 2852	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
EGFR   2400000 perm   2673 sec   (898 perm/sec)   p_kst 4.166667e-07   p_cons 1.188333e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 7.323069e-02	ci left: 1.144056e-03	ci right 1.231424e-03	k: 2861	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
EGFR   2410000 perm   2692 sec   (895 perm/sec)   p_kst 4.149378e-07   p_cons 1.187137e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 7.307765e-02	ci left: 1.144196e-03	ci right 1.231385e-03	k: 2873	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
EGFR   2420000 perm   2713 sec   (892 perm/sec)   p_kst 4.132231e-07   p_cons 1.187190e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 7.302696e-02	ci left: 1.141103e-03	ci right 1.227994e-03	k: 2877	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
EGFR   2430000 perm   2732 sec   (889 perm/sec)   p_kst 4.115226e-07   p_cons 1.183951e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 7.287519e-02	ci left: 1.141255e-03	ci right 1.227969e-03	k: 2889	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
EGFR   2440000 perm   2752 sec   (887 perm/sec)   p_kst 4.098361e-07   p_cons 1.184016e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 7.271182e-02	ci left: 1.141806e-03	ci right 1.228359e-03	k: 2902	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
EGFR   2450000 perm   2773 sec   (884 perm/sec)   p_kst 4.081633e-07   p_cons 1.184490e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 8.579157e-02	ci left: 8.115817e-04	ci right 8.847235e-04	k: 2085	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
EGFR   2460000 perm   2793 sec   (881 perm/sec)   p_kst 4.065041e-07   p_cons 8.475610e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 8.566850e-02	ci left: 8.106730e-04	ci right 8.836229e-04	k: 2091	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
EGFR   2470000 perm   2813 sec   (878 perm/sec)   p_kst 4.048583e-07   p_cons 8.465587e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 8.554595e-02	ci left: 8.097717e-04	ci right 8.825310e-04	k: 2097	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
EGFR   2480000 perm   2833 sec   (876 perm/sec)   p_kst 4.032258e-07   p_cons 8.455645e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 8.536304e-02	ci left: 8.100568e-04	ci right 8.826784e-04	k: 2106	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
EGFR   2490000 perm   2853 sec   (873 perm/sec)   p_kst 4.016064e-07   p_cons 8.457831e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 8.514104e-02	ci left: 8.111228e-04	ci right 8.836414e-04	k: 2117	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
EGFR   2500000 perm   2873 sec   (870 perm/sec)   p_kst 4.000000e-07   p_cons 8.468000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 8.490081e-02	ci left: 8.125705e-04	ci right 8.850034e-04	k: 2129	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
EGFR   2510000 perm   2894 sec   (867 perm/sec)   p_kst 3.984064e-07   p_cons 8.482072e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 8.476167e-02	ci left: 8.120648e-04	ci right 8.843282e-04	k: 2136	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
EGFR   2520000 perm   2914 sec   (865 perm/sec)   p_kst 3.968254e-07   p_cons 8.476190e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 8.454431e-02	ci left: 8.131109e-04	ci right 8.852727e-04	k: 2147	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
EGFR   2530000 perm   2934 sec   (862 perm/sec)   p_kst 3.952569e-07   p_cons 8.486166e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 8.442652e-02	ci left: 8.122220e-04	ci right 8.841995e-04	k: 2153	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
EGFR   2540000 perm   2955 sec   (860 perm/sec)   p_kst 3.937008e-07   p_cons 8.476378e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 8.425069e-02	ci left: 8.124918e-04	ci right 8.843358e-04	k: 2162	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
EGFR   2550000 perm   2975 sec   (857 perm/sec)   p_kst 3.921569e-07   p_cons 8.478431e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 8.405658e-02	ci left: 8.131420e-04	ci right 8.848698e-04	k: 2172	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
EGFR   2560000 perm   2996 sec   (854 perm/sec)   p_kst 3.906250e-07   p_cons 8.484375e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 8.390229e-02	ci left: 8.130255e-04	ci right 8.846049e-04	k: 2180	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
EGFR   2570000 perm   3017 sec   (852 perm/sec)   p_kst 3.891051e-07   p_cons 8.482490e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 8.376799e-02	ci left: 8.125305e-04	ci right 8.839463e-04	k: 2187	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
EGFR   2580000 perm   3038 sec   (849 perm/sec)   p_kst 3.875969e-07   p_cons 8.476744e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 8.363434e-02	ci left: 8.120395e-04	ci right 8.832927e-04	k: 2194	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
EGFR   2590000 perm   3060 sec   (846 perm/sec)   p_kst 3.861004e-07   p_cons 8.471042e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 8.357733e-02	ci left: 8.100459e-04	ci right 8.810734e-04	k: 2197	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
EGFR   2600000 perm   3081 sec   (844 perm/sec)   p_kst 3.846154e-07   p_cons 8.450000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 8.346353e-02	ci left: 8.091931e-04	ci right 8.800445e-04	k: 2203	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
EGFR   2610000 perm   3102 sec   (841 perm/sec)   p_kst 3.831418e-07   p_cons 8.440613e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 8.327480e-02	ci left: 8.098419e-04	ci right 8.805819e-04	k: 2213	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
EGFR   2620000 perm   3123 sec   (839 perm/sec)   p_kst 3.816794e-07   p_cons 8.446565e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 8.312476e-02	ci left: 8.097411e-04	ci right 8.803387e-04	k: 2221	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
EGFR   2630000 perm   3144 sec   (836 perm/sec)   p_kst 3.802281e-07   p_cons 8.444867e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 8.301280e-02	ci left: 8.088994e-04	ci right 8.793241e-04	k: 2227	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
EGFR   2640000 perm   3166 sec   (834 perm/sec)   p_kst 3.787879e-07   p_cons 8.435606e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 8.277160e-02	ci left: 8.106510e-04	ci right 8.810132e-04	k: 2240	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
EGFR   2650000 perm   3187 sec   (831 perm/sec)   p_kst 3.773585e-07   p_cons 8.452830e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 8.260588e-02	ci left: 8.109169e-04	ci right 8.811545e-04	k: 2249	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
EGFR   2660000 perm   3209 sec   (829 perm/sec)   p_kst 3.759398e-07   p_cons 8.454887e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 8.247771e-02	ci left: 8.104474e-04	ci right 8.805301e-04	k: 2256	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
EGFR   2670000 perm   3230 sec   (827 perm/sec)   p_kst 3.745318e-07   p_cons 8.449438e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 8.225926e-02	ci left: 8.118087e-04	ci right 8.818143e-04	k: 2268	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
EGFR   2680000 perm   3253 sec   (824 perm/sec)   p_kst 3.731343e-07   p_cons 8.462687e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 8.207857e-02	ci left: 8.124320e-04	ci right 8.823301e-04	k: 2278	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
EGFR   2690000 perm   3274 sec   (822 perm/sec)   p_kst 3.717472e-07   p_cons 8.468401e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 8.191697e-02	ci left: 8.126880e-04	ci right 8.824638e-04	k: 2287	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
EGFR   2700000 perm   3297 sec   (819 perm/sec)   p_kst 3.703704e-07   p_cons 8.470370e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 8.173852e-02	ci left: 8.133036e-04	ci right 8.829730e-04	k: 2297	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
EGFR   2710000 perm   3319 sec   (817 perm/sec)   p_kst 3.690037e-07   p_cons 8.476015e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 8.156123e-02	ci left: 8.139150e-04	ci right 8.834783e-04	k: 2307	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
EGFR   2720000 perm   3341 sec   (814 perm/sec)   p_kst 3.676471e-07   p_cons 8.481618e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 8.129738e-02	ci left: 8.163163e-04	ci right 8.858484e-04	k: 2322	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
EGFR   2730000 perm   3363 sec   (812 perm/sec)   p_kst 3.663004e-07   p_cons 8.505495e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 8.121008e-02	ci left: 8.151247e-04	ci right 8.844773e-04	k: 2327	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
EGFR   2740000 perm   3386 sec   (809 perm/sec)   p_kst 3.649635e-07   p_cons 8.492701e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 8.100153e-02	ci left: 8.164358e-04	ci right 8.857131e-04	k: 2339	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
EGFR   2750000 perm   3408 sec   (807 perm/sec)   p_kst 3.636364e-07   p_cons 8.505455e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 8.091518e-02	ci left: 8.152526e-04	ci right 8.843523e-04	k: 2344	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
EGFR   2760000 perm   3431 sec   (805 perm/sec)   p_kst 3.623188e-07   p_cons 8.492754e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 8.077752e-02	ci left: 8.151391e-04	ci right 8.841062e-04	k: 2352	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
EGFR   2770000 perm   3453 sec   (802 perm/sec)   p_kst 3.610108e-07   p_cons 8.490975e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 8.060639e-02	ci left: 8.157315e-04	ci right 8.845956e-04	k: 2362	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
EGFR   2780000 perm   3476 sec   (800 perm/sec)   p_kst 3.597122e-07   p_cons 8.496403e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 8.041939e-02	ci left: 8.166711e-04	ci right 8.854470e-04	k: 2373	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
EGFR   2790000 perm   3498 sec   (798 perm/sec)   p_kst 3.584229e-07   p_cons 8.505376e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 8.030111e-02	ci left: 8.162041e-04	ci right 8.848349e-04	k: 2380	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
EGFR   2800000 perm   3521 sec   (795 perm/sec)   p_kst 3.571429e-07   p_cons 8.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 8.018335e-02	ci left: 8.157406e-04	ci right 8.842271e-04	k: 2387	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
EGFR   2810000 perm   3543 sec   (793 perm/sec)   p_kst 3.558719e-07   p_cons 8.494662e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 7.999928e-02	ci left: 8.166705e-04	ci right 8.850704e-04	k: 2398	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
EGFR   2820000 perm   3566 sec   (791 perm/sec)   p_kst 3.546099e-07   p_cons 8.503546e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 7.978333e-02	ci left: 8.182866e-04	ci right 8.866283e-04	k: 2411	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
EGFR   2830000 perm   3588 sec   (789 perm/sec)   p_kst 3.533569e-07   p_cons 8.519435e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 7.960199e-02	ci left: 8.192014e-04	ci right 8.874568e-04	k: 2422	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
EGFR   2840000 perm   3611 sec   (787 perm/sec)   p_kst 3.521127e-07   p_cons 8.528169e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 7.953643e-02	ci left: 8.177026e-04	ci right 8.857743e-04	k: 2426	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
EGFR   2850000 perm   3634 sec   (784 perm/sec)   p_kst 3.508772e-07   p_cons 8.512281e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 7.942200e-02	ci left: 8.172424e-04	ci right 8.851734e-04	k: 2433	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
EGFR   2860000 perm   3657 sec   (782 perm/sec)   p_kst 3.496503e-07   p_cons 8.506993e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 7.924311e-02	ci left: 8.181516e-04	ci right 8.859979e-04	k: 2444	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
EGFR   2870000 perm   3680 sec   (780 perm/sec)   p_kst 3.484321e-07   p_cons 8.515679e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 7.904931e-02	ci left: 8.193950e-04	ci right 8.871706e-04	k: 2456	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
EGFR   2880000 perm   3704 sec   (778 perm/sec)   p_kst 3.472222e-07   p_cons 8.527778e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 7.890492e-02	ci left: 8.196124e-04	ci right 8.872765e-04	k: 2465	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
EGFR   2890000 perm   3727 sec   (775 perm/sec)   p_kst 3.460208e-07   p_cons 8.529412e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 7.874540e-02	ci left: 8.201665e-04	ci right 8.877332e-04	k: 2475	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
EGFR   2900000 perm   3750 sec   (773 perm/sec)   p_kst 3.448276e-07   p_cons 8.534483e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 7.871370e-02	ci left: 8.180218e-04	ci right 8.853834e-04	k: 2477	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
EGFR   2910000 perm   3773 sec   (771 perm/sec)   p_kst 3.436426e-07   p_cons 8.512027e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 7.850798e-02	ci left: 8.195849e-04	ci right 8.868908e-04	k: 2490	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
EGFR   2920000 perm   3796 sec   (769 perm/sec)   p_kst 3.424658e-07   p_cons 8.527397e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 7.839792e-02	ci left: 8.191299e-04	ci right 8.862998e-04	k: 2497	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
EGFR   2930000 perm   3820 sec   (767 perm/sec)   p_kst 3.412969e-07   p_cons 8.522184e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 7.821025e-02	ci left: 8.203454e-04	ci right 8.874467e-04	k: 2509	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
EGFR   2940000 perm   3844 sec   (765 perm/sec)   p_kst 3.401361e-07   p_cons 8.534014e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 7.805490e-02	ci left: 8.208882e-04	ci right 8.878944e-04	k: 2519	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
EGFR   2950000 perm   3867 sec   (763 perm/sec)   p_kst 3.389831e-07   p_cons 8.538983e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 7.794673e-02	ci left: 8.204337e-04	ci right 8.873058e-04	k: 2526	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
EGFR   2960000 perm   3890 sec   (761 perm/sec)   p_kst 3.378378e-07   p_cons 8.533784e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 7.774695e-02	ci left: 8.219632e-04	ci right 8.887805e-04	k: 2539	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
EGFR   2970000 perm   3914 sec   (759 perm/sec)   p_kst 3.367003e-07   p_cons 8.548822e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 7.767058e-02	ci left: 8.208502e-04	ci right 8.875085e-04	k: 2544	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
EGFR   2980000 perm   3937 sec   (757 perm/sec)   p_kst 3.355705e-07   p_cons 8.536913e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 7.751842e-02	ci left: 8.213844e-04	ci right 8.879496e-04	k: 2554	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
EGFR   2990000 perm   3961 sec   (755 perm/sec)   p_kst 3.344482e-07   p_cons 8.541806e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 7.732190e-02	ci left: 8.228960e-04	ci right 8.894069e-04	k: 2567	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
EGFR   3000000 perm   3985 sec   (753 perm/sec)   p_kst 3.333333e-07   p_cons 8.556667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 7.712687e-02	ci left: 8.243977e-04	ci right 8.908544e-04	k: 2580	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
EGFR   3010000 perm   4009 sec   (751 perm/sec)   p_kst 3.322259e-07   p_cons 8.571429e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 7.699275e-02	ci left: 8.245906e-04	ci right 8.909421e-04	k: 2589	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
EGFR   3020000 perm   4033 sec   (749 perm/sec)   p_kst 3.311258e-07   p_cons 8.572848e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 7.687412e-02	ci left: 8.244586e-04	ci right 8.906927e-04	k: 2597	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
EGFR   3030000 perm   4057 sec   (747 perm/sec)   p_kst 3.300330e-07   p_cons 8.570957e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 7.675604e-02	ci left: 8.243276e-04	ci right 8.904449e-04	k: 2605	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
EGFR   3040000 perm   4081 sec   (745 perm/sec)   p_kst 3.289474e-07   p_cons 8.569079e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 7.666786e-02	ci left: 8.235544e-04	ci right 8.895304e-04	k: 2611	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
EGFR   3050000 perm   4106 sec   (743 perm/sec)   p_kst 3.278689e-07   p_cons 8.560656e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 7.657999e-02	ci left: 8.227862e-04	ci right 8.886218e-04	k: 2617	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
EGFR   3060000 perm   4130 sec   (741 perm/sec)   p_kst 3.267974e-07   p_cons 8.552288e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 7.640504e-02	ci left: 8.239402e-04	ci right 8.897108e-04	k: 2629	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
EGFR   3070000 perm   4154 sec   (739 perm/sec)   p_kst 3.257329e-07   p_cons 8.563518e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 7.630358e-02	ci left: 8.234944e-04	ci right 8.891382e-04	k: 2636	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
EGFR   3080000 perm   4179 sec   (737 perm/sec)   p_kst 3.246753e-07   p_cons 8.558442e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 7.617370e-02	ci left: 8.236864e-04	ci right 8.892289e-04	k: 2645	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
EGFR   3090000 perm   4204 sec   (735 perm/sec)   p_kst 3.236246e-07   p_cons 8.559871e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 7.603015e-02	ci left: 8.241938e-04	ci right 8.896476e-04	k: 2655	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
EGFR   3100000 perm   4228 sec   (733 perm/sec)   p_kst 3.225806e-07   p_cons 8.564516e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 7.593017e-02	ci left: 8.237517e-04	ci right 8.890805e-04	k: 2662	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
EGFR   3110000 perm   4253 sec   (731 perm/sec)   p_kst 3.215434e-07   p_cons 8.559486e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 7.585904e-02	ci left: 8.226836e-04	ci right 8.878639e-04	k: 2667	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
EGFR   3120000 perm   4277 sec   (729 perm/sec)   p_kst 3.205128e-07   p_cons 8.548077e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 7.573140e-02	ci left: 8.228761e-04	ci right 8.879572e-04	k: 2676	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
EGFR   3130000 perm   4302 sec   (728 perm/sec)   p_kst 3.194888e-07   p_cons 8.549521e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 7.559033e-02	ci left: 8.233800e-04	ci right 8.883742e-04	k: 2686	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
EGFR   3140000 perm   4327 sec   (726 perm/sec)   p_kst 3.184713e-07   p_cons 8.554140e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 7.543605e-02	ci left: 8.241922e-04	ci right 8.891120e-04	k: 2697	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
EGFR   3150000 perm   4351 sec   (724 perm/sec)   p_kst 3.174603e-07   p_cons 8.561905e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 7.532447e-02	ci left: 8.240679e-04	ci right 8.888777e-04	k: 2705	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
EGFR   3160000 perm   4376 sec   (722 perm/sec)   p_kst 3.164557e-07   p_cons 8.560127e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 7.511648e-02	ci left: 8.261112e-04	ci right 8.908945e-04	k: 2720	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
EGFR   3170000 perm   4401 sec   (720 perm/sec)   p_kst 3.154574e-07   p_cons 8.580442e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 7.493763e-02	ci left: 8.275248e-04	ci right 8.922576e-04	k: 2733	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
EGFR   3180000 perm   4426 sec   (718 perm/sec)   p_kst 3.144654e-07   p_cons 8.594340e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 7.489662e-02	ci left: 8.258535e-04	ci right 8.904186e-04	k: 2736	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
EGFR   3190000 perm   4451 sec   (717 perm/sec)   p_kst 3.134796e-07   p_cons 8.576803e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 7.478741e-02	ci left: 8.257259e-04	ci right 8.901829e-04	k: 2744	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
EGFR   3200000 perm   4477 sec   (715 perm/sec)   p_kst 3.125000e-07   p_cons 8.575000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 7.467867e-02	ci left: 8.255992e-04	ci right 8.899485e-04	k: 2752	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
EGFR   3210000 perm   4502 sec   (713 perm/sec)   p_kst 3.115265e-07   p_cons 8.573209e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 7.455690e-02	ci left: 8.257781e-04	ci right 8.900318e-04	k: 2761	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
EGFR   3220000 perm   4528 sec   (711 perm/sec)   p_kst 3.105590e-07   p_cons 8.574534e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 7.448954e-02	ci left: 8.247406e-04	ci right 8.888532e-04	k: 2766	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
EGFR   3230000 perm   4554 sec   (709 perm/sec)   p_kst 3.095975e-07   p_cons 8.563467e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 7.442238e-02	ci left: 8.237096e-04	ci right 8.876818e-04	k: 2771	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
EGFR   3240000 perm   4580 sec   (707 perm/sec)   p_kst 3.086420e-07   p_cons 8.552469e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 7.427512e-02	ci left: 8.244968e-04	ci right 8.883979e-04	k: 2782	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
EGFR   3250000 perm   4605 sec   (706 perm/sec)   p_kst 3.076923e-07   p_cons 8.560000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 7.422185e-02	ci left: 8.231718e-04	ci right 8.869226e-04	k: 2786	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
EGFR   3260000 perm   4631 sec   (704 perm/sec)   p_kst 3.067485e-07   p_cons 8.546012e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 7.407578e-02	ci left: 8.239561e-04	ci right 8.876365e-04	k: 2797	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
EGFR   3270000 perm   4656 sec   (702 perm/sec)   p_kst 3.058104e-07   p_cons 8.553517e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 7.395693e-02	ci left: 8.241371e-04	ci right 8.877250e-04	k: 2806	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
EGFR   3280000 perm   4682 sec   (701 perm/sec)   p_kst 3.048780e-07   p_cons 8.554878e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 7.374697e-02	ci left: 8.264056e-04	ci right 8.899797e-04	k: 2822	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
EGFR   3290000 perm   4708 sec   (699 perm/sec)   p_kst 3.039514e-07   p_cons 8.577508e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 7.362969e-02	ci left: 8.265784e-04	ci right 8.900603e-04	k: 2831	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
EGFR   3300000 perm   4734 sec   (697 perm/sec)   p_kst 3.030303e-07   p_cons 8.578788e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 7.351296e-02	ci left: 8.267502e-04	ci right 8.901404e-04	k: 2840	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
EGFR   3310000 perm   4760 sec   (695 perm/sec)   p_kst 3.021148e-07   p_cons 8.580060e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 7.342258e-02	ci left: 8.263296e-04	ci right 8.896064e-04	k: 2847	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
EGFR   3320000 perm   4786 sec   (694 perm/sec)   p_kst 3.012048e-07   p_cons 8.575301e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 7.334539e-02	ci left: 8.256169e-04	ci right 8.887698e-04	k: 2853	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
EGFR   3330000 perm   4812 sec   (692 perm/sec)   p_kst 3.003003e-07   p_cons 8.567568e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 7.323001e-02	ci left: 8.257902e-04	ci right 8.888528e-04	k: 2862	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
EGFR   3340000 perm   4838 sec   (690 perm/sec)   p_kst 2.994012e-07   p_cons 8.568862e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 7.316619e-02	ci left: 8.247904e-04	ci right 8.877193e-04	k: 2867	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
EGFR   3350000 perm   4864 sec   (689 perm/sec)   p_kst 2.985075e-07   p_cons 8.558209e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 7.310253e-02	ci left: 8.237965e-04	ci right 8.865926e-04	k: 2872	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
EGFR   3360000 perm   4891 sec   (687 perm/sec)   p_kst 2.976190e-07   p_cons 8.547619e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 7.305175e-02	ci left: 8.225173e-04	ci right 8.851705e-04	k: 2876	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
EGFR   3370000 perm   4918 sec   (685 perm/sec)   p_kst 2.967359e-07   p_cons 8.534125e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 7.295040e-02	ci left: 8.224074e-04	ci right 8.849617e-04	k: 2884	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
EGFR   3380000 perm   4945 sec   (684 perm/sec)   p_kst 2.958580e-07   p_cons 8.532544e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 7.287469e-02	ci left: 8.217191e-04	ci right 8.841534e-04	k: 2890	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
EGFR   3390000 perm   4972 sec   (682 perm/sec)   p_kst 2.949853e-07   p_cons 8.525074e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 7.273641e-02	ci left: 8.224787e-04	ci right 8.848471e-04	k: 2901	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
EGFR   3400000 perm   4999 sec   (680 perm/sec)   p_kst 2.941176e-07   p_cons 8.532353e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 7.262388e-02	ci left: 8.226580e-04	ci right 8.849395e-04	k: 2910	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
EGFR   3410000 perm   5025 sec   (679 perm/sec)   p_kst 2.932551e-07   p_cons 8.533724e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 7.261149e-02	ci left: 8.205397e-04	ci right 8.826497e-04	k: 2911	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
EGFR   3420000 perm   5052 sec   (677 perm/sec)   p_kst 2.923977e-07   p_cons 8.511696e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 7.251196e-02	ci left: 8.204375e-04	ci right 8.824510e-04	k: 2919	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
EGFR   3430000 perm   5080 sec   (675 perm/sec)   p_kst 2.915452e-07   p_cons 8.510204e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 7.242522e-02	ci left: 8.200505e-04	ci right 8.819575e-04	k: 2926	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
EGFR   3440000 perm   5106 sec   (674 perm/sec)   p_kst 2.906977e-07   p_cons 8.505814e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 7.235112e-02	ci left: 8.193812e-04	ci right 8.811717e-04	k: 2932	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
EGFR   3450000 perm   5133 sec   (672 perm/sec)   p_kst 2.898551e-07   p_cons 8.498551e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 7.226496e-02	ci left: 8.189995e-04	ci right 8.806847e-04	k: 2939	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
EGFR   3460000 perm   5161 sec   (670 perm/sec)   p_kst 2.890173e-07   p_cons 8.494220e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 7.217910e-02	ci left: 8.186202e-04	ci right 8.802004e-04	k: 2946	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
EGFR   3470000 perm   5188 sec   (669 perm/sec)   p_kst 2.881844e-07   p_cons 8.489914e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 7.199603e-02	ci left: 8.205005e-04	ci right 8.820591e-04	k: 2961	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
EGFR   3480000 perm   5215 sec   (667 perm/sec)   p_kst 2.873563e-07   p_cons 8.508621e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 7.191113e-02	ci left: 8.201191e-04	ci right 8.815735e-04	k: 2968	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
EGFR   3490000 perm   5243 sec   (666 perm/sec)   p_kst 2.865330e-07   p_cons 8.504298e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 7.179031e-02	ci left: 8.205817e-04	ci right 8.819632e-04	k: 2978	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
EGFR   3500000 perm   5270 sec   (664 perm/sec)   p_kst 2.857143e-07   p_cons 8.508571e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 7.163414e-02	ci left: 8.218812e-04	ci right 8.832206e-04	k: 2991	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
EGFR   3510000 perm   5298 sec   (662 perm/sec)   p_kst 2.849003e-07   p_cons 8.521368e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 7.157439e-02	ci left: 8.209413e-04	ci right 8.821573e-04	k: 2996	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
EGFR   3520000 perm   5326 sec   (661 perm/sec)   p_kst 2.840909e-07   p_cons 8.511364e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 7.141962e-02	ci left: 8.222326e-04	ci right 8.834068e-04	k: 3009	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
EGFR   3530000 perm   5354 sec   (659 perm/sec)   p_kst 2.832861e-07   p_cons 8.524079e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 7.131308e-02	ci left: 8.224069e-04	ci right 8.834990e-04	k: 3018	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
EGFR   3540000 perm   5382 sec   (658 perm/sec)   p_kst 2.824859e-07   p_cons 8.525424e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 7.123056e-02	ci left: 8.220270e-04	ci right 8.830173e-04	k: 3025	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
EGFR   3550000 perm   5410 sec   (656 perm/sec)   p_kst 2.816901e-07   p_cons 8.521127e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 7.111314e-02	ci left: 8.224769e-04	ci right 8.833959e-04	k: 3035	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
EGFR   3560000 perm   5438 sec   (655 perm/sec)   p_kst 2.808989e-07   p_cons 8.525281e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 7.097298e-02	ci left: 8.234747e-04	ci right 8.843424e-04	k: 3047	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
EGFR   3570000 perm   5466 sec   (653 perm/sec)   p_kst 2.801120e-07   p_cons 8.535014e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 7.085683e-02	ci left: 8.239183e-04	ci right 8.847150e-04	k: 3057	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
EGFR   3580000 perm   5494 sec   (652 perm/sec)   p_kst 2.793296e-07   p_cons 8.539106e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 7.075278e-02	ci left: 8.240858e-04	ci right 8.848019e-04	k: 3066	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
EGFR   3590000 perm   5523 sec   (650 perm/sec)   p_kst 2.785515e-07   p_cons 8.540390e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 7.063770e-02	ci left: 8.245254e-04	ci right 8.851710e-04	k: 3076	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
EGFR   3600000 perm   5551 sec   (649 perm/sec)   p_kst 2.777778e-07   p_cons 8.544444e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 7.055751e-02	ci left: 8.241462e-04	ci right 8.846923e-04	k: 3083	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
EGFR   3610000 perm   5580 sec   (647 perm/sec)   p_kst 2.770083e-07   p_cons 8.540166e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 7.051184e-02	ci left: 8.229550e-04	ci right 8.833729e-04	k: 3087	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
EGFR   3620000 perm   5608 sec   (645 perm/sec)   p_kst 2.762431e-07   p_cons 8.527624e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 7.042069e-02	ci left: 8.228529e-04	ci right 8.831820e-04	k: 3095	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
EGFR   3630000 perm   5636 sec   (644 perm/sec)   p_kst 2.754821e-07   p_cons 8.526171e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 7.027326e-02	ci left: 8.241010e-04	ci right 8.843899e-04	k: 3108	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
EGFR   3640000 perm   5665 sec   (643 perm/sec)   p_kst 2.747253e-07   p_cons 8.538462e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 7.020557e-02	ci left: 8.234581e-04	ci right 8.836397e-04	k: 3114	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
EGFR   3650000 perm   5693 sec   (641 perm/sec)   p_kst 2.739726e-07   p_cons 8.531507e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 7.012684e-02	ci left: 8.230872e-04	ci right 8.831715e-04	k: 3121	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
EGFR   3660000 perm   5722 sec   (640 perm/sec)   p_kst 2.732240e-07   p_cons 8.527322e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 7.004837e-02	ci left: 8.227184e-04	ci right 8.827058e-04	k: 3128	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
EGFR   3670000 perm   5751 sec   (638 perm/sec)   p_kst 2.724796e-07   p_cons 8.523161e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 6.993669e-02	ci left: 8.231526e-04	ci right 8.830721e-04	k: 3138	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
EGFR   3680000 perm   5780 sec   (637 perm/sec)   p_kst 2.717391e-07   p_cons 8.527174e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 6.981444e-02	ci left: 8.238508e-04	ci right 8.837120e-04	k: 3149	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
EGFR   3690000 perm   5809 sec   (635 perm/sec)   p_kst 2.710027e-07   p_cons 8.533875e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 6.973702e-02	ci left: 8.234831e-04	ci right 8.832485e-04	k: 3156	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
EGFR   3700000 perm   5838 sec   (634 perm/sec)   p_kst 2.702703e-07   p_cons 8.529730e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 6.965984e-02	ci left: 8.231173e-04	ci right 8.827874e-04	k: 3163	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
EGFR   3710000 perm   5867 sec   (632 perm/sec)   p_kst 2.695418e-07   p_cons 8.525606e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 6.955001e-02	ci left: 8.235460e-04	ci right 8.831493e-04	k: 3173	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
EGFR   3720000 perm   5896 sec   (631 perm/sec)   p_kst 2.688172e-07   p_cons 8.529570e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 6.947346e-02	ci left: 8.231822e-04	ci right 8.826909e-04	k: 3180	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
EGFR   3730000 perm   5925 sec   (629 perm/sec)   p_kst 2.680965e-07   p_cons 8.525469e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 6.938627e-02	ci left: 8.230831e-04	ci right 8.825069e-04	k: 3188	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
EGFR   3740000 perm   5954 sec   (628 perm/sec)   p_kst 2.673797e-07   p_cons 8.524064e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 6.928856e-02	ci left: 8.232466e-04	ci right 8.825952e-04	k: 3197	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
EGFR   3750000 perm   5984 sec   (627 perm/sec)   p_kst 2.666667e-07   p_cons 8.525333e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 6.915889e-02	ci left: 8.241934e-04	ci right 8.834946e-04	k: 3209	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
EGFR   3760000 perm   6013 sec   (625 perm/sec)   p_kst 2.659574e-07   p_cons 8.534574e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 6.904068e-02	ci left: 8.248745e-04	ci right 8.841192e-04	k: 3220	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
EGFR   3770000 perm   6043 sec   (624 perm/sec)   p_kst 2.652520e-07   p_cons 8.541114e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 6.894442e-02	ci left: 8.250322e-04	ci right 8.842023e-04	k: 3229	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
EGFR   3780000 perm   6073 sec   (622 perm/sec)   p_kst 2.645503e-07   p_cons 8.542328e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 6.876362e-02	ci left: 8.272636e-04	ci right 8.864320e-04	k: 3246	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
EGFR   3790000 perm   6102 sec   (621 perm/sec)   p_kst 2.638522e-07   p_cons 8.564644e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 6.873193e-02	ci left: 8.258625e-04	ci right 8.849024e-04	k: 3249	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
EGFR   3800000 perm   6132 sec   (620 perm/sec)   p_kst 2.631579e-07   p_cons 8.550000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 6.862642e-02	ci left: 8.262745e-04	ci right 8.852495e-04	k: 3259	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
EGFR   3810000 perm   6162 sec   (618 perm/sec)   p_kst 2.624672e-07   p_cons 8.553806e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 6.854237e-02	ci left: 8.261698e-04	ci right 8.850623e-04	k: 3267	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
EGFR   3820000 perm   6192 sec   (617 perm/sec)   p_kst 2.617801e-07   p_cons 8.552356e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 6.846910e-02	ci left: 8.258091e-04	ci right 8.846104e-04	k: 3274	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
EGFR   3830000 perm   6221 sec   (616 perm/sec)   p_kst 2.610966e-07   p_cons 8.548303e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 6.838563e-02	ci left: 8.257062e-04	ci right 8.844257e-04	k: 3282	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
EGFR   3840000 perm   6252 sec   (614 perm/sec)   p_kst 2.604167e-07   p_cons 8.546875e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 6.831285e-02	ci left: 8.253486e-04	ci right 8.839777e-04	k: 3289	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
EGFR   3850000 perm   6282 sec   (613 perm/sec)   p_kst 2.597403e-07   p_cons 8.542857e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 6.818858e-02	ci left: 8.262662e-04	ci right 8.848495e-04	k: 3301	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
EGFR   3860000 perm   6312 sec   (612 perm/sec)   p_kst 2.590674e-07   p_cons 8.551813e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 6.813704e-02	ci left: 8.254011e-04	ci right 8.838770e-04	k: 3306	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
EGFR   3870000 perm   6343 sec   (610 perm/sec)   p_kst 2.583979e-07   p_cons 8.542636e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 6.805478e-02	ci left: 8.253005e-04	ci right 8.836960e-04	k: 3314	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
EGFR   3880000 perm   6373 sec   (609 perm/sec)   p_kst 2.577320e-07   p_cons 8.541237e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 6.798306e-02	ci left: 8.249478e-04	ci right 8.832544e-04	k: 3321	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
EGFR   3890000 perm   6404 sec   (607 perm/sec)   p_kst 2.570694e-07   p_cons 8.537275e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 6.787076e-02	ci left: 8.256051e-04	ci right 8.838580e-04	k: 3332	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
EGFR   3900000 perm   6434 sec   (606 perm/sec)   p_kst 2.564103e-07   p_cons 8.543590e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 6.774888e-02	ci left: 8.265107e-04	ci right 8.847186e-04	k: 3344	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
EGFR   3910000 perm   6465 sec   (605 perm/sec)   p_kst 2.557545e-07   p_cons 8.552430e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 6.763773e-02	ci left: 8.271608e-04	ci right 8.853152e-04	k: 3355	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
EGFR   3920000 perm   6496 sec   (603 perm/sec)   p_kst 2.551020e-07   p_cons 8.558673e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 6.752714e-02	ci left: 8.278078e-04	ci right 8.859088e-04	k: 3366	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
EGFR   3930000 perm   6526 sec   (602 perm/sec)   p_kst 2.544529e-07   p_cons 8.564885e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 6.743706e-02	ci left: 8.279525e-04	ci right 8.859831e-04	k: 3375	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
EGFR   3940000 perm   6557 sec   (601 perm/sec)   p_kst 2.538071e-07   p_cons 8.565990e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 6.736727e-02	ci left: 8.275987e-04	ci right 8.855421e-04	k: 3382	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
EGFR   3950000 perm   6587 sec   (600 perm/sec)   p_kst 2.531646e-07   p_cons 8.562025e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 6.726791e-02	ci left: 8.279915e-04	ci right 8.858736e-04	k: 3392	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
EGFR   3960000 perm   6618 sec   (598 perm/sec)   p_kst 2.525253e-07   p_cons 8.565657e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 6.717887e-02	ci left: 8.281348e-04	ci right 8.859473e-04	k: 3401	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
EGFR   3970000 perm   6649 sec   (597 perm/sec)   p_kst 2.518892e-07   p_cons 8.566751e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 6.704102e-02	ci left: 8.295127e-04	ci right 8.872979e-04	k: 3415	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
EGFR   3980000 perm   6680 sec   (596 perm/sec)   p_kst 2.512563e-07   p_cons 8.580402e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 6.698224e-02	ci left: 8.289122e-04	ci right 8.866031e-04	k: 3421	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
EGFR   3990000 perm   6711 sec   (595 perm/sec)   p_kst 2.506266e-07   p_cons 8.573935e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 6.692362e-02	ci left: 8.283148e-04	ci right 8.859117e-04	k: 3427	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
EGFR   4000000 perm   6742 sec   (593 perm/sec)   p_kst 2.500000e-07   p_cons 8.567500e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 6.685541e-02	ci left: 8.279657e-04	ci right 8.854772e-04	k: 3434	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
EGFR   4010000 perm   6772 sec   (592 perm/sec)   p_kst 2.493766e-07   p_cons 8.563591e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 6.676799e-02	ci left: 8.281074e-04	ci right 8.855508e-04	k: 3443	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
EGFR   4020000 perm   6804 sec   (591 perm/sec)   p_kst 2.487562e-07   p_cons 8.564677e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 6.669059e-02	ci left: 8.280046e-04	ci right 8.853716e-04	k: 3451	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
EGFR   4030000 perm   6835 sec   (590 perm/sec)   p_kst 2.481390e-07   p_cons 8.563275e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 6.664237e-02	ci left: 8.271720e-04	ci right 8.844383e-04	k: 3456	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
EGFR   4040000 perm   6867 sec   (588 perm/sec)   p_kst 2.475248e-07   p_cons 8.554455e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 6.660389e-02	ci left: 8.261008e-04	ci right 8.832587e-04	k: 3460	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
EGFR   4050000 perm   6898 sec   (587 perm/sec)   p_kst 2.469136e-07   p_cons 8.543210e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 6.655586e-02	ci left: 8.252771e-04	ci right 8.823352e-04	k: 3465	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
EGFR   4060000 perm   6930 sec   (586 perm/sec)   p_kst 2.463054e-07   p_cons 8.534483e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 6.648876e-02	ci left: 8.249407e-04	ci right 8.819158e-04	k: 3472	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
EGFR   4070000 perm   6961 sec   (585 perm/sec)   p_kst 2.457002e-07   p_cons 8.530713e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 6.642187e-02	ci left: 8.246059e-04	ci right 8.814984e-04	k: 3479	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
EGFR   4080000 perm   6994 sec   (583 perm/sec)   p_kst 2.450980e-07   p_cons 8.526961e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 6.636470e-02	ci left: 8.240324e-04	ci right 8.808345e-04	k: 3485	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
EGFR   4090000 perm   7026 sec   (582 perm/sec)   p_kst 2.444988e-07   p_cons 8.520782e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 6.632670e-02	ci left: 8.229820e-04	ci right 8.796780e-04	k: 3489	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
EGFR   4100000 perm   7058 sec   (581 perm/sec)   p_kst 2.439024e-07   p_cons 8.509756e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 6.629825e-02	ci left: 8.216974e-04	ci right 8.782797e-04	k: 3492	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
EGFR   4110000 perm   7090 sec   (580 perm/sec)   p_kst 2.433090e-07   p_cons 8.496350e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 6.622247e-02	ci left: 8.216126e-04	ci right 8.781219e-04	k: 3500	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
EGFR   4120000 perm   7122 sec   (579 perm/sec)   p_kst 2.427184e-07   p_cons 8.495146e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 6.616581e-02	ci left: 8.210519e-04	ci right 8.774725e-04	k: 3506	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
EGFR   4130000 perm   7153 sec   (577 perm/sec)   p_kst 2.421308e-07   p_cons 8.489104e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 6.609048e-02	ci left: 8.209691e-04	ci right 8.773173e-04	k: 3514	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
EGFR   4140000 perm   7185 sec   (576 perm/sec)   p_kst 2.415459e-07   p_cons 8.487923e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 6.597793e-02	ci left: 8.218347e-04	ci right 8.781426e-04	k: 3526	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
EGFR   4150000 perm   7218 sec   (575 perm/sec)   p_kst 2.409639e-07   p_cons 8.496386e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 6.585663e-02	ci left: 8.229327e-04	ci right 8.792081e-04	k: 3539	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
EGFR   4160000 perm   7251 sec   (574 perm/sec)   p_kst 2.403846e-07   p_cons 8.507212e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 6.581020e-02	ci left: 8.221385e-04	ci right 8.783185e-04	k: 3544	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
EGFR   4170000 perm   7284 sec   (572 perm/sec)   p_kst 2.398082e-07   p_cons 8.498801e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 6.571756e-02	ci left: 8.225247e-04	ci right 8.786489e-04	k: 3554	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
EGFR   4180000 perm   7317 sec   (571 perm/sec)   p_kst 2.392344e-07   p_cons 8.502392e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 6.563453e-02	ci left: 8.226743e-04	ci right 8.787352e-04	k: 3563	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
EGFR   4190000 perm   7350 sec   (570 perm/sec)   p_kst 2.386635e-07   p_cons 8.503580e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 6.556099e-02	ci left: 8.225891e-04	ci right 8.785789e-04	k: 3571	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
EGFR   4200000 perm   7382 sec   (569 perm/sec)   p_kst 2.380952e-07   p_cons 8.502381e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 6.549686e-02	ci left: 8.222707e-04	ci right 8.781820e-04	k: 3578	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
EGFR   4210000 perm   7415 sec   (568 perm/sec)   p_kst 2.375297e-07   p_cons 8.498812e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 6.537820e-02	ci left: 8.233523e-04	ci right 8.792320e-04	k: 3591	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
EGFR   4220000 perm   7448 sec   (567 perm/sec)   p_kst 2.369668e-07   p_cons 8.509479e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 6.529644e-02	ci left: 8.234988e-04	ci right 8.793158e-04	k: 3600	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
EGFR   4230000 perm   7480 sec   (565 perm/sec)   p_kst 2.364066e-07   p_cons 8.510638e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 6.523308e-02	ci left: 8.231806e-04	ci right 8.789198e-04	k: 3607	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
EGFR   4240000 perm   7513 sec   (564 perm/sec)   p_kst 2.358491e-07   p_cons 8.507075e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 6.511584e-02	ci left: 8.242526e-04	ci right 8.799604e-04	k: 3620	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
EGFR   4250000 perm   7546 sec   (563 perm/sec)   p_kst 2.352941e-07   p_cons 8.517647e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 6.500819e-02	ci left: 8.250889e-04	ci right 8.807575e-04	k: 3632	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
EGFR   4260000 perm   7579 sec   (562 perm/sec)   p_kst 2.347418e-07   p_cons 8.525822e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 6.492781e-02	ci left: 8.252301e-04	ci right 8.808368e-04	k: 3641	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
EGFR   4270000 perm   7613 sec   (561 perm/sec)   p_kst 2.341920e-07   p_cons 8.526932e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 6.488331e-02	ci left: 8.244512e-04	ci right 8.799660e-04	k: 3646	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
EGFR   4280000 perm   7646 sec   (560 perm/sec)   p_kst 2.336449e-07   p_cons 8.518692e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 6.483003e-02	ci left: 8.239053e-04	ci right 8.793361e-04	k: 3652	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
EGFR   4290000 perm   7679 sec   (559 perm/sec)   p_kst 2.331002e-07   p_cons 8.512821e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 6.476801e-02	ci left: 8.235908e-04	ci right 8.789454e-04	k: 3659	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
EGFR   4300000 perm   7712 sec   (558 perm/sec)   p_kst 2.325581e-07   p_cons 8.509302e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 6.466207e-02	ci left: 8.244191e-04	ci right 8.797353e-04	k: 3671	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
EGFR   4310000 perm   7745 sec   (556 perm/sec)   p_kst 2.320186e-07   p_cons 8.517401e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 6.456542e-02	ci left: 8.250159e-04	ci right 8.802863e-04	k: 3682	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
EGFR   4320000 perm   7779 sec   (555 perm/sec)   p_kst 2.314815e-07   p_cons 8.523148e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 6.449541e-02	ci left: 8.249283e-04	ci right 8.801307e-04	k: 3690	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
EGFR   4330000 perm   7812 sec   (554 perm/sec)   p_kst 2.309469e-07   p_cons 8.521940e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 6.445180e-02	ci left: 8.241610e-04	ci right 8.792734e-04	k: 3695	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
EGFR   4340000 perm   7845 sec   (553 perm/sec)   p_kst 2.304147e-07   p_cons 8.513825e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 6.437346e-02	ci left: 8.243021e-04	ci right 8.793544e-04	k: 3704	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
EGFR   4350000 perm   7879 sec   (552 perm/sec)   p_kst 2.298851e-07   p_cons 8.514943e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 6.430408e-02	ci left: 8.242168e-04	ci right 8.792019e-04	k: 3712	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
EGFR   4360000 perm   7913 sec   (551 perm/sec)   p_kst 2.293578e-07   p_cons 8.513761e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 6.426951e-02	ci left: 8.232313e-04	ci right 8.781200e-04	k: 3716	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
EGFR   4370000 perm   7947 sec   (550 perm/sec)   p_kst 2.288330e-07   p_cons 8.503432e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 6.424363e-02	ci left: 8.220257e-04	ci right 8.768111e-04	k: 3719	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
EGFR   4380000 perm   7980 sec   (549 perm/sec)   p_kst 2.283105e-07   p_cons 8.490868e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 6.416605e-02	ci left: 8.221704e-04	ci right 8.768969e-04	k: 3728	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
EGFR   4390000 perm   8014 sec   (548 perm/sec)   p_kst 2.277904e-07   p_cons 8.492027e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 6.409733e-02	ci left: 8.220909e-04	ci right 8.767513e-04	k: 3736	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
EGFR   4400000 perm   8048 sec   (547 perm/sec)   p_kst 2.272727e-07   p_cons 8.490909e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 6.404596e-02	ci left: 8.215655e-04	ci right 8.761455e-04	k: 3742	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
EGFR   4410000 perm   8082 sec   (546 perm/sec)   p_kst 2.267574e-07   p_cons 8.485261e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 6.393499e-02	ci left: 8.226009e-04	ci right 8.771515e-04	k: 3755	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
EGFR   4420000 perm   8116 sec   (545 perm/sec)   p_kst 2.262443e-07   p_cons 8.495475e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 6.390101e-02	ci left: 8.216325e-04	ci right 8.760888e-04	k: 3759	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
EGFR   4430000 perm   8150 sec   (544 perm/sec)   p_kst 2.257336e-07   p_cons 8.485327e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 6.384162e-02	ci left: 8.213333e-04	ci right 8.757174e-04	k: 3766	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
EGFR   4440000 perm   8184 sec   (543 perm/sec)   p_kst 2.252252e-07   p_cons 8.481982e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 6.377394e-02	ci left: 8.212567e-04	ci right 8.755759e-04	k: 3774	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
EGFR   4450000 perm   8219 sec   (541 perm/sec)   p_kst 2.247191e-07   p_cons 8.480899e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 6.367279e-02	ci left: 8.220630e-04	ci right 8.763462e-04	k: 3786	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
EGFR   4460000 perm   8253 sec   (540 perm/sec)   p_kst 2.242152e-07   p_cons 8.488789e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 6.362243e-02	ci left: 8.215449e-04	ci right 8.757493e-04	k: 3792	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
EGFR   4470000 perm   8288 sec   (539 perm/sec)   p_kst 2.237136e-07   p_cons 8.483221e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 6.353036e-02	ci left: 8.221274e-04	ci right 8.762889e-04	k: 3803	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
EGFR   4480000 perm   8323 sec   (538 perm/sec)   p_kst 2.232143e-07   p_cons 8.488839e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 6.349701e-02	ci left: 8.211731e-04	ci right 8.752423e-04	k: 3807	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
EGFR   4490000 perm   8358 sec   (537 perm/sec)   p_kst 2.227171e-07   p_cons 8.478842e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 6.346372e-02	ci left: 8.202230e-04	ci right 8.742003e-04	k: 3811	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
EGFR   4500000 perm   8392 sec   (536 perm/sec)   p_kst 2.222222e-07   p_cons 8.468889e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 6.337234e-02	ci left: 8.208047e-04	ci right 8.747397e-04	k: 3822	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
EGFR   4510000 perm   8427 sec   (535 perm/sec)   p_kst 2.217295e-07   p_cons 8.474501e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 6.331441e-02	ci left: 8.205129e-04	ci right 8.743776e-04	k: 3829	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
EGFR   4520000 perm   8462 sec   (534 perm/sec)   p_kst 2.212389e-07   p_cons 8.471239e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 6.325664e-02	ci left: 8.202224e-04	ci right 8.740171e-04	k: 3836	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
EGFR   4530000 perm   8497 sec   (533 perm/sec)   p_kst 2.207506e-07   p_cons 8.467991e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 6.320726e-02	ci left: 8.197165e-04	ci right 8.734344e-04	k: 3842	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
EGFR   4540000 perm   8531 sec   (532 perm/sec)   p_kst 2.202643e-07   p_cons 8.462555e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 6.314157e-02	ci left: 8.196454e-04	ci right 8.733008e-04	k: 3850	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
EGFR   4550000 perm   8567 sec   (531 perm/sec)   p_kst 2.197802e-07   p_cons 8.461538e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 6.307609e-02	ci left: 8.195746e-04	ci right 8.731678e-04	k: 3858	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
EGFR   4560000 perm   8602 sec   (530 perm/sec)   p_kst 2.192982e-07   p_cons 8.460526e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 6.298637e-02	ci left: 8.201503e-04	ci right 8.737020e-04	k: 3869	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
EGFR   4570000 perm   8637 sec   (529 perm/sec)   p_kst 2.188184e-07   p_cons 8.466083e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 6.292949e-02	ci left: 8.198639e-04	ci right 8.733468e-04	k: 3876	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
EGFR   4580000 perm   8672 sec   (528 perm/sec)   p_kst 2.183406e-07   p_cons 8.462882e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 6.284039e-02	ci left: 8.204365e-04	ci right 8.738783e-04	k: 3887	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
EGFR   4590000 perm   8708 sec   (527 perm/sec)   p_kst 2.178649e-07   p_cons 8.468410e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 6.276778e-02	ci left: 8.205788e-04	ci right 8.739658e-04	k: 3896	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
EGFR   4600000 perm   8743 sec   (526 perm/sec)   p_kst 2.173913e-07   p_cons 8.469565e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 6.267936e-02	ci left: 8.211475e-04	ci right 8.744935e-04	k: 3907	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
EGFR   4610000 perm   8779 sec   (525 perm/sec)   p_kst 2.169197e-07   p_cons 8.475054e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 6.263132e-02	ci left: 8.206485e-04	ci right 8.739197e-04	k: 3913	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
EGFR   4620000 perm   8814 sec   (524 perm/sec)   p_kst 2.164502e-07   p_cons 8.469697e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 6.251161e-02	ci left: 8.220651e-04	ci right 8.753226e-04	k: 3928	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
EGFR   4630000 perm   8849 sec   (523 perm/sec)   p_kst 2.159827e-07   p_cons 8.483801e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 6.241634e-02	ci left: 8.228392e-04	ci right 8.760627e-04	k: 3940	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
EGFR   4640000 perm   8885 sec   (522 perm/sec)   p_kst 2.155172e-07   p_cons 8.491379e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 6.236099e-02	ci left: 8.225515e-04	ci right 8.757076e-04	k: 3947	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
EGFR   4650000 perm   8921 sec   (521 perm/sec)   p_kst 2.150538e-07   p_cons 8.488172e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 6.224282e-02	ci left: 8.239552e-04	ci right 8.770974e-04	k: 3962	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
EGFR   4660000 perm   8957 sec   (520 perm/sec)   p_kst 2.145923e-07   p_cons 8.502146e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 6.219577e-02	ci left: 8.234556e-04	ci right 8.765240e-04	k: 3968	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
EGFR   4670000 perm   8993 sec   (519 perm/sec)   p_kst 2.141328e-07   p_cons 8.496788e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 6.215665e-02	ci left: 8.227479e-04	ci right 8.757361e-04	k: 3973	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
EGFR   4680000 perm   9029 sec   (518 perm/sec)   p_kst 2.136752e-07   p_cons 8.489316e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 6.205521e-02	ci left: 8.237224e-04	ci right 8.766837e-04	k: 3986	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
EGFR   4690000 perm   9065 sec   (517 perm/sec)   p_kst 2.132196e-07   p_cons 8.498934e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 6.199305e-02	ci left: 8.236455e-04	ci right 8.765470e-04	k: 3994	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
EGFR   4700000 perm   9102 sec   (516 perm/sec)   p_kst 2.127660e-07   p_cons 8.497872e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 6.195431e-02	ci left: 8.229419e-04	ci right 8.757640e-04	k: 3999	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
EGFR   4710000 perm   9138 sec   (515 perm/sec)   p_kst 2.123142e-07   p_cons 8.490446e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 6.188473e-02	ci left: 8.230757e-04	ci right 8.758448e-04	k: 4008	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
EGFR   4720000 perm   9174 sec   (514 perm/sec)   p_kst 2.118644e-07   p_cons 8.491525e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 6.184619e-02	ci left: 8.223763e-04	ci right 8.750666e-04	k: 4013	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
EGFR   4730000 perm   9210 sec   (514 perm/sec)   p_kst 2.114165e-07   p_cons 8.484144e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 6.174626e-02	ci left: 8.233416e-04	ci right 8.760054e-04	k: 4026	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
EGFR   4740000 perm   9247 sec   (513 perm/sec)   p_kst 2.109705e-07   p_cons 8.493671e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 6.170033e-02	ci left: 8.228519e-04	ci right 8.754439e-04	k: 4032	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
EGFR   4750000 perm   9284 sec   (512 perm/sec)   p_kst 2.105263e-07   p_cons 8.488421e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 6.164686e-02	ci left: 8.225711e-04	ci right 8.750980e-04	k: 4039	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
EGFR   4760000 perm   9321 sec   (511 perm/sec)   p_kst 2.100840e-07   p_cons 8.485294e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 6.159353e-02	ci left: 8.222915e-04	ci right 8.747535e-04	k: 4046	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
EGFR   4770000 perm   9358 sec   (510 perm/sec)   p_kst 2.096436e-07   p_cons 8.482180e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 6.150998e-02	ci left: 8.228371e-04	ci right 8.752601e-04	k: 4057	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
EGFR   4780000 perm   9394 sec   (509 perm/sec)   p_kst 2.092050e-07   p_cons 8.487448e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 6.146457e-02	ci left: 8.223526e-04	ci right 8.747047e-04	k: 4063	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
EGFR   4790000 perm   9432 sec   (508 perm/sec)   p_kst 2.087683e-07   p_cons 8.482255e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 6.138154e-02	ci left: 8.228959e-04	ci right 8.752093e-04	k: 4074	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
EGFR   4800000 perm   9469 sec   (507 perm/sec)   p_kst 2.083333e-07   p_cons 8.487500e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 6.129134e-02	ci left: 8.236416e-04	ci right 8.759228e-04	k: 4086	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
EGFR   4810000 perm   9506 sec   (506 perm/sec)   p_kst 2.079002e-07   p_cons 8.494802e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 6.124642e-02	ci left: 8.231585e-04	ci right 8.753694e-04	k: 4092	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
EGFR   4820000 perm   9543 sec   (505 perm/sec)   p_kst 2.074689e-07   p_cons 8.489627e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 6.118665e-02	ci left: 8.230852e-04	ci right 8.752387e-04	k: 4100	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
EGFR   4830000 perm   9581 sec   (504 perm/sec)   p_kst 2.070393e-07   p_cons 8.488613e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 6.112706e-02	ci left: 8.230123e-04	ci right 8.751085e-04	k: 4108	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
EGFR   4840000 perm   9618 sec   (503 perm/sec)   p_kst 2.066116e-07   p_cons 8.487603e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 6.108993e-02	ci left: 8.223305e-04	ci right 8.743509e-04	k: 4113	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
EGFR   4850000 perm   9655 sec   (502 perm/sec)   p_kst 2.061856e-07   p_cons 8.480412e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 6.103803e-02	ci left: 8.220568e-04	ci right 8.740141e-04	k: 4120	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
EGFR   4860000 perm   9692 sec   (501 perm/sec)   p_kst 2.057613e-07   p_cons 8.477366e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 6.096410e-02	ci left: 8.223909e-04	ci right 8.743041e-04	k: 4130	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
EGFR   4870000 perm   9730 sec   (501 perm/sec)   p_kst 2.053388e-07   p_cons 8.480493e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 6.089779e-02	ci left: 8.225218e-04	ci right 8.743849e-04	k: 4139	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
EGFR   4880000 perm   9768 sec   (500 perm/sec)   p_kst 2.049180e-07   p_cons 8.481557e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 6.084638e-02	ci left: 8.222495e-04	ci right 8.740500e-04	k: 4146	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
EGFR   4890000 perm   9805 sec   (499 perm/sec)   p_kst 2.044990e-07   p_cons 8.478528e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 6.079510e-02	ci left: 8.219783e-04	ci right 8.737166e-04	k: 4153	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
EGFR   4900000 perm   9842 sec   (498 perm/sec)   p_kst 2.040816e-07   p_cons 8.475510e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 6.074395e-02	ci left: 8.217082e-04	ci right 8.733844e-04	k: 4160	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
EGFR   4910000 perm   9880 sec   (497 perm/sec)   p_kst 2.036660e-07   p_cons 8.472505e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 6.071481e-02	ci left: 8.208387e-04	ci right 8.724346e-04	k: 4164	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
EGFR   4920000 perm   9917 sec   (496 perm/sec)   p_kst 2.032520e-07   p_cons 8.463415e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 6.064204e-02	ci left: 8.211713e-04	ci right 8.727241e-04	k: 4174	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
EGFR   4930000 perm   9955 sec   (495 perm/sec)   p_kst 2.028398e-07   p_cons 8.466531e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 6.059853e-02	ci left: 8.207052e-04	ci right 8.721905e-04	k: 4180	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
EGFR   4940000 perm   9992 sec   (494 perm/sec)   p_kst 2.024291e-07   p_cons 8.461538e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 6.054064e-02	ci left: 8.206389e-04	ci right 8.720691e-04	k: 4188	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
EGFR   4950000 perm   10029 sec   (494 perm/sec)   p_kst 2.020202e-07   p_cons 8.460606e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 6.050456e-02	ci left: 8.199772e-04	ci right 8.713342e-04	k: 4193	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
EGFR   4960000 perm   10067 sec   (493 perm/sec)   p_kst 2.016129e-07   p_cons 8.453629e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 6.044694e-02	ci left: 8.199126e-04	ci right 8.712150e-04	k: 4201	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
EGFR   4970000 perm   10105 sec   (492 perm/sec)   p_kst 2.012072e-07   p_cons 8.452716e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 6.038948e-02	ci left: 8.198484e-04	ci right 8.710963e-04	k: 4209	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
EGFR   4980000 perm   10143 sec   (491 perm/sec)   p_kst 2.008032e-07   p_cons 8.451807e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 6.034651e-02	ci left: 8.193896e-04	ci right 8.705712e-04	k: 4215	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
EGFR   4990000 perm   10182 sec   (490 perm/sec)   p_kst 2.004008e-07   p_cons 8.446894e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 5.125679e-02	ci left: 1.138448e-03	ci right 1.198532e-03	k: 5841	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
EGFR   5000000 perm   10220 sec   (489 perm/sec)   p_kst 2.000000e-07   p_cons 1.168200e-03   p_joint 0

Outputting figure to mutsig2_images.part000000000055/EGFR.33_4009_5000000_2e-07_0.0011682_0.png
                gene_name: EGFR
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0012 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
EGFLAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
EGFLAM   10000 perm   2 sec   (5004 perm/sec)   p_kst 7.656000e-01   p_cons 2.168000e-01   p_joint 5.608000e-01

Outputting figure to mutsig2_images.part000000000055/EGFLAM.18_3132_10000_0.7656_0.2168_0.5608.png
                gene_name: EGFLAM
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
EFHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
Cons ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
KS ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
EFHB   10000 perm   2 sec   (5452 perm/sec)   p_kst 7.214000e-01   p_cons 1.226000e-01   p_joint 3.101000e-01

Joint ci ratio: 4.218996e-02	ci left: 2.950945e-01	ci right 3.078633e-01	k: 6029	n:20000
Cons ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
KS ci ratio: 1.718881e-02	ci left: 7.159857e-01	ci right 7.284497e-01	k: 14445	n:20000
EFHB   20000 perm   4 sec   (4947 perm/sec)   p_kst 7.222500e-01   p_cons 1.237000e-01   p_joint 3.014500e-01

Outputting figure to mutsig2_images.part000000000055/EFHB.11_2554_20000_0.72225_0.1237_0.30145.png
                gene_name: EFHB
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 6 percent done.
EFCAB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
Cons ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
KS ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
EFCAB5   10000 perm   2 sec   (5040 perm/sec)   p_kst 3.692000e-01   p_cons 7.107000e-01   p_joint 6.977000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB5.10_4771_10000_0.3692_0.7107_0.6977.png
                gene_name: EFCAB5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 9 percent done.
EFCAB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
Cons ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
KS ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
EFCAB6   10000 perm   2 sec   (5181 perm/sec)   p_kst 4.844000e-01   p_cons 6.012000e-01   p_joint 7.800000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB6.9_4626_10000_0.4844_0.6012_0.78.png
                gene_name: EFCAB6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 11 percent done.
EGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 1.534925e-02	ci left: 8.602896e-01	ci right 8.736958e-01	k: 8671	n:10000
KS ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
EGF   10000 perm   2 sec   (5048 perm/sec)   p_kst 2.570000e-02   p_cons 8.671000e-01   p_joint 7.560000e-02

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 1.113109e-02	ci left: 8.562802e-01	ci right 8.659146e-01	k: 17223	n:20000
KS ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
EGF   20000 perm   4 sec   (4641 perm/sec)   p_kst 2.575000e-02   p_cons 8.611500e-01   p_joint 8.525000e-02

Joint ci ratio: 9.268685e-02	ci left: 5.365288e-02	ci right 5.890013e-02	k: 1687	n:30000
Cons ci ratio: 9.193750e-03	ci left: 8.543698e-01	ci right 8.622940e-01	k: 25751	n:30000
KS ci ratio: 1.434081e-01	ci left: 2.255495e-02	ci right 2.607133e-02	k: 728	n:30000
EGF   30000 perm   7 sec   (4469 perm/sec)   p_kst 2.426667e-02   p_cons 8.583667e-01   p_joint 5.623333e-02

Joint ci ratio: 8.908038e-02	ci left: 4.411441e-02	ci right 4.825179e-02	k: 1846	n:40000
Cons ci ratio: 7.973108e-03	ci left: 8.545661e-01	ci right 8.614318e-01	k: 34321	n:40000
KS ci ratio: 1.250553e-01	ci left: 2.247381e-02	ci right 2.549584e-02	k: 958	n:40000
EGF   40000 perm   9 sec   (4344 perm/sec)   p_kst 2.395000e-02   p_cons 8.580250e-01   p_joint 4.615000e-02

Joint ci ratio: 6.756203e-02	ci left: 6.094484e-02	ci right 6.522606e-02	k: 3153	n:50000
Cons ci ratio: 7.262647e-03	ci left: 8.503902e-01	ci right 8.566087e-01	k: 42676	n:50000
KS ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
EGF   50000 perm   12 sec   (4233 perm/sec)   p_kst 2.384000e-02   p_cons 8.535200e-01   p_joint 6.306000e-02

Joint ci ratio: 7.033830e-02	ci left: 4.748289e-02	ci right 5.096087e-02	k: 2952	n:60000
Cons ci ratio: 6.624615e-03	ci left: 8.508636e-01	ci right 8.565355e-01	k: 51223	n:60000
KS ci ratio: 1.020894e-01	ci left: 2.275760e-02	ci right 2.522207e-02	k: 1438	n:60000
EGF   60000 perm   14 sec   (4159 perm/sec)   p_kst 2.396667e-02   p_cons 8.537167e-01   p_joint 4.920000e-02

Joint ci ratio: 5.068797e-02	ci left: 7.671561e-02	ci right 8.071940e-02	k: 5509	n:70000
Cons ci ratio: 6.152870e-03	ci left: 8.502687e-01	ci right 8.555306e-01	k: 59704	n:70000
KS ci ratio: 9.233732e-02	ci left: 2.393979e-02	ci right 2.627123e-02	k: 1756	n:70000
EGF   70000 perm   17 sec   (4088 perm/sec)   p_kst 2.508571e-02   p_cons 8.529143e-01   p_joint 7.870000e-02

Outputting figure to mutsig2_images.part000000000055/EGF.9_3720_70000_0.025086_0.85291_0.0787.png
                gene_name: EGF
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 13 percent done.
EHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
Cons ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
EHBP1   10000 perm   2 sec   (5361 perm/sec)   p_kst 5.790000e-02   p_cons 5.644000e-01   p_joint 7.350000e-02

Joint ci ratio: 9.001893e-02	ci left: 8.268849e-02	ci right 9.053218e-02	k: 1731	n:20000
Cons ci ratio: 2.446881e-02	ci left: 5.550904e-01	ci right 5.688916e-01	k: 11240	n:20000
KS ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
EHBP1   20000 perm   4 sec   (4894 perm/sec)   p_kst 5.960000e-02   p_cons 5.620000e-01   p_joint 8.655000e-02

Joint ci ratio: 6.803418e-02	ci left: 9.623351e-02	ci right 1.030443e-01	k: 2988	n:30000
Cons ci ratio: 2.007126e-02	ci left: 5.540937e-01	ci right 5.653614e-01	k: 16792	n:30000
KS ci ratio: 8.992521e-02	ci left: 5.688186e-02	ci right 6.227049e-02	k: 1786	n:30000
EHBP1   30000 perm   6 sec   (4702 perm/sec)   p_kst 5.953333e-02   p_cons 5.597333e-01   p_joint 9.960000e-02

Outputting figure to mutsig2_images.part000000000055/EHBP1.9_3792_30000_0.059533_0.55973_0.0996.png
                gene_name: EHBP1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 15 percent done.
EHHADH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
KS ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
EHHADH   10000 perm   2 sec   (6006 perm/sec)   p_kst 4.700000e-03   p_cons 4.200000e-02   p_joint 1.460000e-02

Joint ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
Cons ci ratio: 1.306830e-01	ci left: 4.023021e-02	ci right 4.590360e-02	k: 860	n:20000
KS ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
EHHADH   20000 perm   4 sec   (5406 perm/sec)   p_kst 4.850000e-03   p_cons 4.300000e-02   p_joint 5.700000e-03

Joint ci ratio: 3.541719e-01	ci left: 3.347848e-03	ci right 4.817423e-03	k: 121	n:30000
Cons ci ratio: 1.077757e-01	ci left: 3.995277e-02	ci right 4.453642e-02	k: 1266	n:30000
KS ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
EHHADH   30000 perm   6 sec   (5167 perm/sec)   p_kst 5.133333e-03   p_cons 4.220000e-02   p_joint 4.033333e-03

Joint ci ratio: 3.260741e-01	ci left: 3.013892e-03	ci right 4.209958e-03	k: 143	n:40000
Cons ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
KS ci ratio: 2.837070e-01	ci left: 4.076631e-03	ci right 5.446791e-03	k: 189	n:40000
EHHADH   40000 perm   8 sec   (5012 perm/sec)   p_kst 4.725000e-03   p_cons 4.280000e-02   p_joint 3.575000e-03

Joint ci ratio: 1.811333e-01	ci left: 8.439034e-03	ci right 1.013867e-02	k: 463	n:50000
Cons ci ratio: 8.921028e-02	ci left: 3.551894e-02	ci right 3.885507e-02	k: 1858	n:50000
KS ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
EHHADH   50000 perm   10 sec   (4883 perm/sec)   p_kst 5.200000e-03   p_cons 3.716000e-02   p_joint 9.260000e-03

Joint ci ratio: 3.502471e-01	ci left: 1.719231e-03	ci right 2.463582e-03	k: 124	n:60000
Cons ci ratio: 7.833143e-02	ci left: 3.849504e-02	ci right 4.164965e-02	k: 2403	n:60000
KS ci ratio: 2.250004e-01	ci left: 4.467073e-03	ci right 5.614940e-03	k: 301	n:60000
EHHADH   60000 perm   13 sec   (4782 perm/sec)   p_kst 5.016667e-03   p_cons 4.005000e-02   p_joint 2.066667e-03

Joint ci ratio: 3.286229e-01	ci left: 1.695799e-03	ci right 2.375113e-03	k: 141	n:70000
Cons ci ratio: 7.250294e-02	ci left: 3.863048e-02	ci right 4.155066e-02	k: 2805	n:70000
KS ci ratio: 2.087074e-01	ci left: 4.490952e-03	ci right 5.550718e-03	k: 350	n:70000
EHHADH   70000 perm   15 sec   (4683 perm/sec)   p_kst 5.000000e-03   p_cons 4.007143e-02   p_joint 2.014286e-03

Joint ci ratio: 1.975030e-01	ci left: 4.416016e-03	ci right 5.395419e-03	k: 391	n:80000
Cons ci ratio: 7.060610e-02	ci left: 3.578854e-02	ci right 3.842016e-02	k: 2967	n:80000
KS ci ratio: 1.952630e-01	ci left: 4.523008e-03	ci right 5.513412e-03	k: 400	n:80000
EHHADH   80000 perm   17 sec   (4596 perm/sec)   p_kst 5.000000e-03   p_cons 3.708750e-02   p_joint 4.887500e-03

Joint ci ratio: 1.455034e-01	ci left: 7.417630e-03	ci right 8.592192e-03	k: 719	n:90000
Cons ci ratio: 6.635172e-02	ci left: 3.609323e-02	ci right 3.858115e-02	k: 3359	n:90000
KS ci ratio: 1.866335e-01	ci left: 4.422474e-03	ci right 5.343217e-03	k: 438	n:90000
EHHADH   90000 perm   20 sec   (4513 perm/sec)   p_kst 4.866667e-03   p_cons 3.732222e-02   p_joint 7.988889e-03

Joint ci ratio: 1.408135e-01	ci left: 7.148247e-03	ci right 8.240599e-03	k: 768	n:100000
Cons ci ratio: 6.269717e-02	ci left: 3.643926e-02	ci right 3.880766e-02	k: 3761	n:100000
KS ci ratio: 1.745176e-01	ci left: 4.581809e-03	ci right 5.467275e-03	k: 501	n:100000
EHHADH   100000 perm   23 sec   (4438 perm/sec)   p_kst 5.010000e-03   p_cons 3.761000e-02   p_joint 7.680000e-03

Joint ci ratio: 1.374828e-01	ci left: 6.831756e-03	ci right 7.849024e-03	k: 806	n:110000
Cons ci ratio: 5.970601e-02	ci left: 3.658207e-02	ci right 3.884238e-02	k: 4147	n:110000
KS ci ratio: 1.664264e-01	ci left: 4.600444e-03	ci right 5.444160e-03	k: 551	n:110000
EHHADH   110000 perm   25 sec   (4365 perm/sec)   p_kst 5.009091e-03   p_cons 3.770000e-02   p_joint 7.327273e-03

Joint ci ratio: 1.370982e-01	ci left: 6.302560e-03	ci right 7.238182e-03	k: 811	n:120000
Cons ci ratio: 5.703392e-02	ci left: 3.679373e-02	ci right 3.896201e-02	k: 4544	n:120000
KS ci ratio: 1.581813e-01	ci left: 4.688796e-03	ci right 5.502071e-03	k: 610	n:120000
EHHADH   120000 perm   28 sec   (4292 perm/sec)   p_kst 5.083333e-03   p_cons 3.786667e-02   p_joint 6.758333e-03

Joint ci ratio: 1.429159e-01	ci left: 5.342485e-03	ci right 6.172102e-03	k: 747	n:130000
Cons ci ratio: 5.455362e-02	ci left: 3.715692e-02	ci right 3.924836e-02	k: 4965	n:130000
KS ci ratio: 1.517359e-01	ci left: 4.720013e-03	ci right 5.502313e-03	k: 663	n:130000
EHHADH   130000 perm   31 sec   (4224 perm/sec)   p_kst 5.100000e-03   p_cons 3.819231e-02   p_joint 5.746154e-03

Joint ci ratio: 1.413396e-01	ci left: 5.077940e-03	ci right 5.857044e-03	k: 764	n:140000
Cons ci ratio: 5.248761e-02	ci left: 3.730774e-02	ci right 3.932573e-02	k: 5363	n:140000
KS ci ratio: 1.467409e-01	ci left: 4.699169e-03	ci right 5.450126e-03	k: 709	n:140000
EHHADH   140000 perm   34 sec   (4159 perm/sec)   p_kst 5.064286e-03   p_cons 3.830714e-02   p_joint 5.457143e-03

Joint ci ratio: 1.451319e-01	ci left: 4.488627e-03	ci right 5.197388e-03	k: 725	n:150000
Cons ci ratio: 5.061701e-02	ci left: 3.747266e-02	ci right 3.942523e-02	k: 5766	n:150000
KS ci ratio: 1.415517e-01	ci left: 4.726488e-03	ci right 5.452845e-03	k: 762	n:150000
EHHADH   150000 perm   37 sec   (4096 perm/sec)   p_kst 5.080000e-03   p_cons 3.844000e-02   p_joint 4.833333e-03

Joint ci ratio: 1.475200e-01	ci left: 4.069535e-03	ci right 4.723624e-03	k: 702	n:160000
Cons ci ratio: 4.907807e-02	ci left: 3.740192e-02	ci right 3.928986e-02	k: 6134	n:160000
KS ci ratio: 1.375560e-01	ci left: 4.702509e-03	ci right 5.403111e-03	k: 807	n:160000
EHHADH   160000 perm   40 sec   (4036 perm/sec)   p_kst 5.043750e-03   p_cons 3.833750e-02   p_joint 4.387500e-03

Joint ci ratio: 1.441796e-01	ci left: 4.017176e-03	ci right 4.646971e-03	k: 735	n:170000
Cons ci ratio: 4.755373e-02	ci left: 3.752056e-02	ci right 3.935405e-02	k: 6533	n:170000
KS ci ratio: 1.337232e-01	ci left: 4.692979e-03	ci right 5.371129e-03	k: 854	n:170000
EHHADH   170000 perm   43 sec   (3975 perm/sec)   p_kst 5.023529e-03   p_cons 3.842941e-02   p_joint 4.323529e-03

Joint ci ratio: 1.456954e-01	ci left: 3.713646e-03	ci right 4.302506e-03	k: 720	n:180000
Cons ci ratio: 4.622558e-02	ci left: 3.752793e-02	ci right 3.930919e-02	k: 6914	n:180000
KS ci ratio: 1.306313e-01	ci left: 4.652497e-03	ci right 5.308047e-03	k: 895	n:180000
EHHADH   180000 perm   46 sec   (3912 perm/sec)   p_kst 4.972222e-03   p_cons 3.841111e-02   p_joint 4.000000e-03

Joint ci ratio: 1.428550e-01	ci left: 3.665306e-03	ci right 4.234204e-03	k: 749	n:190000
Cons ci ratio: 4.506711e-02	ci left: 3.743105e-02	ci right 3.916202e-02	k: 7275	n:190000
KS ci ratio: 1.267959e-01	ci left: 4.687788e-03	ci right 5.327458e-03	k: 950	n:190000
EHHADH   190000 perm   49 sec   (3853 perm/sec)   p_kst 5.000000e-03   p_cons 3.828947e-02   p_joint 3.942105e-03

Joint ci ratio: 1.414562e-01	ci left: 3.554358e-03	ci right 4.100178e-03	k: 764	n:200000
Cons ci ratio: 4.289669e-02	ci left: 3.921959e-02	ci right 4.094378e-02	k: 8015	n:200000
KS ci ratio: 1.241508e-01	ci left: 4.651959e-03	ci right 5.272523e-03	k: 991	n:200000
EHHADH   200000 perm   53 sec   (3796 perm/sec)   p_kst 4.955000e-03   p_cons 4.007500e-02   p_joint 3.820000e-03

Joint ci ratio: 1.183155e-01	ci left: 4.892228e-03	ci right 5.512027e-03	k: 1091	n:210000
Cons ci ratio: 4.186755e-02	ci left: 3.923185e-02	ci right 4.091420e-02	k: 8414	n:210000
KS ci ratio: 1.234177e-01	ci left: 4.485786e-03	ci right 5.080391e-03	k: 1003	n:210000
EHHADH   210000 perm   56 sec   (3742 perm/sec)   p_kst 4.776190e-03   p_cons 4.006667e-02   p_joint 5.195238e-03

Joint ci ratio: 1.497613e-01	ci left: 2.871999e-03	ci right 3.341245e-03	k: 682	n:220000
Cons ci ratio: 4.093087e-02	ci left: 3.920295e-02	ci right 4.084556e-02	k: 8804	n:220000
KS ci ratio: 1.161579e-01	ci left: 4.850746e-03	ci right 5.453314e-03	k: 1132	n:220000
EHHADH   220000 perm   60 sec   (3689 perm/sec)   p_kst 5.145455e-03   p_cons 4.001818e-02   p_joint 3.100000e-03

Joint ci ratio: 1.474090e-01	ci left: 2.839221e-03	ci right 3.295184e-03	k: 704	n:230000
Cons ci ratio: 3.997518e-02	ci left: 3.932766e-02	ci right 4.093613e-02	k: 9229	n:230000
KS ci ratio: 1.135325e-01	ci left: 4.863662e-03	ci right 5.453263e-03	k: 1185	n:230000
EHHADH   230000 perm   63 sec   (3637 perm/sec)   p_kst 5.152174e-03   p_cons 4.012609e-02   p_joint 3.060870e-03

Joint ci ratio: 1.450640e-01	ci left: 2.813245e-03	ci right 3.257225e-03	k: 727	n:240000
Cons ci ratio: 3.911935e-02	ci left: 3.937221e-02	ci right 4.094725e-02	k: 9637	n:240000
KS ci ratio: 1.114851e-01	ci left: 4.839180e-03	ci right 5.414538e-03	k: 1229	n:240000
EHHADH   240000 perm   67 sec   (3585 perm/sec)   p_kst 5.120833e-03   p_cons 4.015417e-02   p_joint 3.029167e-03

Joint ci ratio: 1.447740e-01	ci left: 2.712269e-03	ci right 3.139384e-03	k: 730	n:250000
Cons ci ratio: 3.828645e-02	ci left: 3.947298e-02	ci right 4.101770e-02	k: 10060	n:250000
KS ci ratio: 1.092005e-01	ci left: 4.847873e-03	ci right 5.411694e-03	k: 1281	n:250000
EHHADH   250000 perm   71 sec   (3537 perm/sec)   p_kst 5.124000e-03   p_cons 4.024000e-02   p_joint 2.920000e-03

Joint ci ratio: 1.008876e-01	ci left: 5.481713e-03	ci right 6.067848e-03	k: 1500	n:260000
Cons ci ratio: 3.605094e-02	ci left: 4.271148e-02	ci right 4.428333e-02	k: 11308	n:260000
KS ci ratio: 1.072126e-01	ci left: 4.841034e-03	ci right 5.393163e-03	k: 1329	n:260000
EHHADH   260000 perm   74 sec   (3491 perm/sec)   p_kst 5.111538e-03   p_cons 4.349231e-02   p_joint 5.769231e-03

Joint ci ratio: 1.009661e-01	ci left: 5.271438e-03	ci right 5.835552e-03	k: 1498	n:270000
Cons ci ratio: 3.538957e-02	ci left: 4.269693e-02	ci right 4.423882e-02	k: 11735	n:270000
KS ci ratio: 1.048714e-01	ci left: 4.878070e-03	ci right 5.421525e-03	k: 1389	n:270000
EHHADH   270000 perm   78 sec   (3446 perm/sec)   p_kst 5.144444e-03   p_cons 4.346296e-02   p_joint 5.548148e-03

Joint ci ratio: 9.948576e-02	ci left: 5.239853e-03	ci right 5.791886e-03	k: 1543	n:280000
Cons ci ratio: 3.475586e-02	ci left: 4.270136e-02	ci right 4.421525e-02	k: 12167	n:280000
KS ci ratio: 1.032876e-01	ci left: 4.853424e-03	ci right 5.385470e-03	k: 1432	n:280000
EHHADH   280000 perm   82 sec   (3404 perm/sec)   p_kst 5.114286e-03   p_cons 4.345357e-02   p_joint 5.510714e-03

Joint ci ratio: 9.260100e-02	ci left: 5.856886e-03	ci right 6.428913e-03	k: 1780	n:290000
Cons ci ratio: 3.645038e-02	ci left: 3.765224e-02	ci right 3.905355e-02	k: 11121	n:290000
KS ci ratio: 1.014286e-01	ci left: 4.864145e-03	ci right 5.387199e-03	k: 1485	n:290000
EHHADH   290000 perm   86 sec   (3364 perm/sec)   p_kst 5.120690e-03   p_cons 3.834828e-02   p_joint 6.137931e-03

Joint ci ratio: 9.419303e-02	ci left: 5.469532e-03	ci right 6.013416e-03	k: 1721	n:300000
Cons ci ratio: 3.589701e-02	ci left: 3.754333e-02	ci right 3.891894e-02	k: 11468	n:300000
KS ci ratio: 9.996071e-02	ci left: 4.844978e-03	ci right 5.357988e-03	k: 1529	n:300000
EHHADH   300000 perm   90 sec   (3325 perm/sec)   p_kst 5.096667e-03   p_cons 3.822667e-02   p_joint 5.736667e-03

Outputting figure to mutsig2_images.part000000000055/EHHADH.8_2200_300000_0.0050967_0.038227_0.0057367.png
                gene_name: EHHADH
               theta_stop: 0.100 
                    nperm: 300000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0054 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0060 

Current progress: 17 percent done.
EHMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
Cons ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
KS ci ratio: 3.362839e-02	ci left: 5.662431e-01	ci right 5.857126e-01	k: 5760	n:10000
EHMT1   10000 perm   2 sec   (5243 perm/sec)   p_kst 5.760000e-01   p_cons 4.558000e-01   p_joint 7.524000e-01

Outputting figure to mutsig2_images.part000000000055/EHMT1.8_4054_10000_0.576_0.4558_0.7524.png
                gene_name: EHMT1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 19 percent done.
EIF2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
EIF2C1   10000 perm   2 sec   (5481 perm/sec)   p_kst 7.600000e-03   p_cons 1.426000e-01   p_joint 2.590000e-02

Joint ci ratio: 2.016150e-01	ci left: 1.667773e-02	ci right 2.046408e-02	k: 370	n:20000
Cons ci ratio: 6.751176e-02	ci left: 1.393584e-01	ci right 1.491453e-01	k: 2884	n:20000
KS ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
EIF2C1   20000 perm   4 sec   (4981 perm/sec)   p_kst 7.550000e-03   p_cons 1.442000e-01   p_joint 1.850000e-02

Joint ci ratio: 1.359467e-01	ci left: 2.513068e-02	ci right 2.882836e-02	k: 808	n:30000
Cons ci ratio: 5.510483e-02	ci left: 1.403416e-01	ci right 1.483274e-01	k: 4329	n:30000
KS ci ratio: 2.586157e-01	ci left: 6.617327e-03	ci right 8.613141e-03	k: 227	n:30000
EIF2C1   30000 perm   6 sec   (4777 perm/sec)   p_kst 7.566667e-03   p_cons 1.443000e-01   p_joint 2.693333e-02

Joint ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
Cons ci ratio: 4.747909e-02	ci left: 1.421321e-01	ci right 1.490694e-01	k: 5823	n:40000
KS ci ratio: 2.273853e-01	ci left: 6.536354e-03	ci right 8.236338e-03	k: 294	n:40000
EIF2C1   40000 perm   9 sec   (4640 perm/sec)   p_kst 7.350000e-03   p_cons 1.455750e-01   p_joint 2.075000e-02

Joint ci ratio: 1.279013e-01	ci left: 1.725941e-02	ci right 1.963697e-02	k: 921	n:50000
Cons ci ratio: 4.251110e-02	ci left: 1.422416e-01	ci right 1.484397e-01	k: 7266	n:50000
KS ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
EIF2C1   50000 perm   11 sec   (4526 perm/sec)   p_kst 7.480000e-03   p_cons 1.453200e-01   p_joint 1.842000e-02

Joint ci ratio: 1.246453e-01	ci left: 1.520497e-02	ci right 1.724221e-02	k: 972	n:60000
Cons ci ratio: 3.875365e-02	ci left: 1.428528e-01	ci right 1.485148e-01	k: 8740	n:60000
KS ci ratio: 1.859779e-01	ci left: 6.666223e-03	ci right 8.048738e-03	k: 440	n:60000
EIF2C1   60000 perm   14 sec   (4434 perm/sec)   p_kst 7.333333e-03   p_cons 1.456667e-01   p_joint 1.620000e-02

Joint ci ratio: 1.338745e-01	ci left: 1.128939e-02	ci right 1.292286e-02	k: 846	n:70000
Cons ci ratio: 3.588683e-02	ci left: 1.430089e-01	ci right 1.482490e-01	k: 10193	n:70000
KS ci ratio: 1.729458e-01	ci left: 6.655382e-03	ci right 7.928830e-03	k: 509	n:70000
EIF2C1   70000 perm   16 sec   (4351 perm/sec)   p_kst 7.271429e-03   p_cons 1.456143e-01   p_joint 1.208571e-02

Joint ci ratio: 1.309629e-01	ci left: 1.034923e-02	ci right 1.181155e-02	k: 885	n:80000
Cons ci ratio: 3.349723e-02	ci left: 1.437087e-01	ci right 1.486170e-01	k: 11692	n:80000
KS ci ratio: 1.607867e-01	ci left: 6.781776e-03	ci right 7.979366e-03	k: 589	n:80000
EIF2C1   80000 perm   19 sec   (4272 perm/sec)   p_kst 7.362500e-03   p_cons 1.461500e-01   p_joint 1.106250e-02

Joint ci ratio: 1.281541e-01	ci left: 9.629123e-03	ci right 1.095828e-02	k: 925	n:90000
Cons ci ratio: 3.161335e-02	ci left: 1.435996e-01	ci right 1.482232e-01	k: 13131	n:90000
KS ci ratio: 1.507639e-01	ci left: 6.893219e-03	ci right 8.027763e-03	k: 670	n:90000
EIF2C1   90000 perm   21 sec   (4196 perm/sec)   p_kst 7.444444e-03   p_cons 1.459000e-01   p_joint 1.027778e-02

Joint ci ratio: 1.219910e-01	ci left: 9.596174e-03	ci right 1.085248e-02	k: 1021	n:100000
Cons ci ratio: 2.996356e-02	ci left: 1.439459e-01	ci right 1.483346e-01	k: 14613	n:100000
KS ci ratio: 1.416513e-01	ci left: 7.061405e-03	ci right 8.147448e-03	k: 759	n:100000
EIF2C1   100000 perm   24 sec   (4123 perm/sec)   p_kst 7.590000e-03   p_cons 1.461300e-01   p_joint 1.021000e-02

Joint ci ratio: 1.546210e-01	ci left: 5.359776e-03	ci right 6.266578e-03	k: 638	n:110000
Cons ci ratio: 2.853319e-02	ci left: 1.443609e-01	ci right 1.485486e-01	k: 16109	n:110000
KS ci ratio: 1.302765e-01	ci left: 7.631536e-03	ci right 8.703730e-03	k: 897	n:110000
EIF2C1   110000 perm   27 sec   (4054 perm/sec)   p_kst 8.154545e-03   p_cons 1.464455e-01   p_joint 5.800000e-03

Joint ci ratio: 1.522810e-01	ci left: 5.073337e-03	ci right 5.917498e-03	k: 658	n:120000
Cons ci ratio: 2.732351e-02	ci left: 1.444043e-01	ci right 1.484128e-01	k: 17568	n:120000
KS ci ratio: 1.254839e-01	ci left: 7.560232e-03	ci right 8.580423e-03	k: 967	n:120000
EIF2C1   120000 perm   30 sec   (3992 perm/sec)   p_kst 8.058333e-03   p_cons 1.464000e-01   p_joint 5.483333e-03

Joint ci ratio: 1.310218e-01	ci left: 6.390215e-03	ci right 7.293532e-03	k: 888	n:130000
Cons ci ratio: 2.626620e-02	ci left: 1.443447e-01	ci right 1.481942e-01	k: 19014	n:130000
KS ci ratio: 1.204838e-01	ci left: 7.590050e-03	ci right 8.570545e-03	k: 1049	n:130000
EIF2C1   130000 perm   33 sec   (3927 perm/sec)   p_kst 8.069231e-03   p_cons 1.462615e-01   p_joint 6.830769e-03

Joint ci ratio: 1.396966e-01	ci left: 5.202014e-03	ci right 5.990104e-03	k: 782	n:140000
Cons ci ratio: 2.530474e-02	ci left: 1.444739e-01	ci right 1.481837e-01	k: 20485	n:140000
KS ci ratio: 1.160892e-01	ci left: 7.609363e-03	ci right 8.554039e-03	k: 1130	n:140000
EIF2C1   140000 perm   36 sec   (3872 perm/sec)   p_kst 8.071429e-03   p_cons 1.463214e-01   p_joint 5.585714e-03

Joint ci ratio: 1.368532e-01	ci left: 5.067578e-03	ci right 5.818400e-03	k: 815	n:150000
Cons ci ratio: 2.446190e-02	ci left: 1.443824e-01	ci right 1.479646e-01	k: 21925	n:150000
KS ci ratio: 1.114039e-01	ci left: 7.730371e-03	ci right 8.648792e-03	k: 1227	n:150000
EIF2C1   150000 perm   39 sec   (3812 perm/sec)   p_kst 8.180000e-03   p_cons 1.461667e-01   p_joint 5.433333e-03

Joint ci ratio: 1.357936e-01	ci left: 4.829292e-03	ci right 5.538820e-03	k: 828	n:160000
Cons ci ratio: 2.368320e-02	ci left: 1.444597e-01	ci right 1.479281e-01	k: 23390	n:160000
KS ci ratio: 1.081944e-01	ci left: 7.697014e-03	ci right 8.583448e-03	k: 1301	n:160000
EIF2C1   160000 perm   43 sec   (3756 perm/sec)   p_kst 8.131250e-03   p_cons 1.461875e-01   p_joint 5.175000e-03

Joint ci ratio: 1.154555e-01	ci left: 6.346263e-03	ci right 7.129525e-03	k: 1144	n:170000
Cons ci ratio: 2.296199e-02	ci left: 1.446641e-01	ci right 1.480303e-01	k: 24878	n:170000
KS ci ratio: 1.045600e-01	ci left: 7.771043e-03	ci right 8.634090e-03	k: 1393	n:170000
EIF2C1   170000 perm   46 sec   (3706 perm/sec)   p_kst 8.194118e-03   p_cons 1.463412e-01   p_joint 6.729412e-03

Joint ci ratio: 9.510491e-02	ci left: 8.905105e-03	ci right 9.799693e-03	k: 1682	n:180000
Cons ci ratio: 2.229892e-02	ci left: 1.448915e-01	ci right 1.481643e-01	k: 26374	n:180000
KS ci ratio: 1.015447e-01	ci left: 7.793962e-03	ci right 8.633104e-03	k: 1477	n:180000
EIF2C1   180000 perm   49 sec   (3656 perm/sec)   p_kst 8.205556e-03   p_cons 1.465222e-01   p_joint 9.344444e-03

Joint ci ratio: 9.362476e-02	ci left: 8.713878e-03	ci right 9.574883e-03	k: 1736	n:190000
Cons ci ratio: 2.169152e-02	ci left: 1.450805e-01	ci right 1.482672e-01	k: 27867	n:190000
KS ci ratio: 9.903212e-02	ci left: 7.773717e-03	ci right 8.588764e-03	k: 1553	n:190000
EIF2C1   190000 perm   53 sec   (3606 perm/sec)   p_kst 8.173684e-03   p_cons 1.466684e-01   p_joint 9.136842e-03

Outputting figure to mutsig2_images.part000000000055/EIF2C1.8_2650_190000_0.0081737_0.14667_0.0091368.png
                gene_name: EIF2C1
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0087 
    ci_joint_bounds_right: 0.0096 

Current progress: 21 percent done.
EIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
Cons ci ratio: 1.459481e-02	ci left: 8.717317e-01	ci right 8.846470e-01	k: 8783	n:10000
KS ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
EIF3A   10000 perm   2 sec   (5129 perm/sec)   p_kst 4.619000e-01   p_cons 8.783000e-01   p_joint 6.677000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3A.8_4237_10000_0.4619_0.8783_0.6677.png
                gene_name: EIF3A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 23 percent done.
EGFL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
Cons ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
KS ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
EGFL6   10000 perm   2 sec   (5840 perm/sec)   p_kst 4.460000e-02   p_cons 3.385000e-01   p_joint 1.111000e-01

Joint ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
Cons ci ratio: 3.901843e-02	ci left: 3.288063e-01	ci right 3.419416e-01	k: 6707	n:20000
KS ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
EGFL6   20000 perm   4 sec   (5258 perm/sec)   p_kst 4.245000e-02   p_cons 3.353500e-01   p_joint 7.145000e-02

Joint ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
Cons ci ratio: 3.182510e-02	ci left: 3.304885e-01	ci right 3.412100e-01	k: 10075	n:30000
KS ci ratio: 1.075985e-01	ci left: 4.008265e-02	ci right 4.467317e-02	k: 1270	n:30000
EGFL6   30000 perm   6 sec   (5047 perm/sec)   p_kst 4.233333e-02   p_cons 3.358333e-01   p_joint 5.416667e-02

Joint ci ratio: 7.544398e-02	ci left: 6.083476e-02	ci right 6.562889e-02	k: 2528	n:40000
Cons ci ratio: 2.750994e-02	ci left: 3.320434e-01	ci right 3.413304e-01	k: 13467	n:40000
KS ci ratio: 9.082104e-02	ci left: 4.247542e-02	ci right 4.654104e-02	k: 1779	n:40000
EGFL6   40000 perm   8 sec   (4903 perm/sec)   p_kst 4.447500e-02   p_cons 3.366750e-01   p_joint 6.320000e-02

Outputting figure to mutsig2_images.part000000000055/EGFL6.7_1713_40000_0.044475_0.33668_0.0632.png
                gene_name: EGFL6
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 26 percent done.
EIF2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
EIF2C2   10000 perm   2 sec   (5875 perm/sec)   p_kst 8.857000e-01   p_cons 4.923000e-01   p_joint 7.685000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2C2.7_2656_10000_0.8857_0.4923_0.7685.png
                gene_name: EIF2C2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 28 percent done.
EFEMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
Cons ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
KS ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
EFEMP2   10000 perm   1 sec   (7058 perm/sec)   p_kst 3.044000e-01   p_cons 6.846000e-01   p_joint 4.782000e-01

Outputting figure to mutsig2_images.part000000000055/EFEMP2.6_1372_10000_0.3044_0.6846_0.4782.png
                gene_name: EFEMP2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
EFTUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
Cons ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
EFTUD1   10000 perm   2 sec   (6089 perm/sec)   p_kst 7.605000e-01   p_cons 4.343000e-01   p_joint 7.501000e-01

Outputting figure to mutsig2_images.part000000000055/EFTUD1.6_3439_10000_0.7605_0.4343_0.7501.png
                gene_name: EFTUD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 32 percent done.
EHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
Cons ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
EHD3   10000 perm   2 sec   (6593 perm/sec)   p_kst 4.189000e-01   p_cons 8.621000e-01   p_joint 7.866000e-01

Outputting figure to mutsig2_images.part000000000055/EHD3.6_1632_10000_0.4189_0.8621_0.7866.png
                gene_name: EHD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 34 percent done.
EIF2AK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 3.621153e-02	ci left: 5.296705e-01	ci right 5.493065e-01	k: 5395	n:10000
EIF2AK1   10000 perm   2 sec   (6521 perm/sec)   p_kst 5.395000e-01   p_cons 8.872000e-01   p_joint 7.788000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK1.6_1953_10000_0.5395_0.8872_0.7788.png
                gene_name: EIF2AK1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 36 percent done.
EIF2AK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
EIF2AK3   10000 perm   2 sec   (6267 perm/sec)   p_kst 5.961000e-01   p_cons 1.309000e-01   p_joint 3.026000e-01

Joint ci ratio: 4.452014e-02	ci left: 2.730895e-01	ci right 2.855747e-01	k: 5586	n:20000
Cons ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
KS ci ratio: 2.283891e-02	ci left: 5.887598e-01	ci right 6.024124e-01	k: 11912	n:20000
EIF2AK3   20000 perm   4 sec   (5610 perm/sec)   p_kst 5.956000e-01   p_cons 1.231500e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK3.6_3419_20000_0.5956_0.12315_0.2793.png
                gene_name: EIF2AK3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
EIF2AK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
Cons ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
KS ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
EIF2AK4   10000 perm   2 sec   (4868 perm/sec)   p_kst 9.610000e-02   p_cons 3.651000e-01   p_joint 1.778000e-01

Joint ci ratio: 6.027681e-02	ci left: 1.692626e-01	ci right 1.798322e-01	k: 3490	n:20000
Cons ci ratio: 3.613848e-02	ci left: 3.636517e-01	ci right 3.770860e-01	k: 7407	n:20000
KS ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
EIF2AK4   20000 perm   5 sec   (4426 perm/sec)   p_kst 9.685000e-02   p_cons 3.703500e-01   p_joint 1.745000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK4.6_5106_20000_0.09685_0.37035_0.1745.png
                gene_name: EIF2AK4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 40 percent done.
EFTUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
EFTUD2   10000 perm   2 sec   (6060 perm/sec)   p_kst 8.856000e-01   p_cons 9.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFTUD2.5_3027_10000_0.8856_0.9609_1.png
                gene_name: EFTUD2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
EIF2AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
KS ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
EIF2AK2   10000 perm   2 sec   (6314 perm/sec)   p_kst 2.947000e-01   p_cons 6.903000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK2.5_1716_10000_0.2947_0.6903_0.529.png
                gene_name: EIF2AK2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 45 percent done.
EIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
KS ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
EIF4B   10000 perm   2 sec   (6590 perm/sec)   p_kst 7.586000e-01   p_cons 7.970000e-02   p_joint 2.970000e-01

Joint ci ratio: 5.245169e-02	ci left: 2.125417e-01	ci right 2.240403e-01	k: 4365	n:20000
Cons ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
KS ci ratio: 1.568742e-02	ci left: 7.513971e-01	ci right 7.633280e-01	k: 15148	n:20000
EIF4B   20000 perm   3 sec   (5838 perm/sec)   p_kst 7.574000e-01   p_cons 7.385000e-02   p_joint 2.182500e-01

Outputting figure to mutsig2_images.part000000000055/EIF4B.5_1896_20000_0.7574_0.07385_0.21825.png
                gene_name: EIF4B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 47 percent done.
EFHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
Cons ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
EFHA2   10000 perm   1 sec   (6748 perm/sec)   p_kst 1.201000e-01   p_cons 2.998000e-01   p_joint 1.654000e-01

Joint ci ratio: 6.109473e-02	ci left: 1.654593e-01	ci right 1.759366e-01	k: 3413	n:20000
Cons ci ratio: 4.274228e-02	ci left: 2.896785e-01	ci right 3.023809e-01	k: 5920	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
EFHA2   20000 perm   3 sec   (6031 perm/sec)   p_kst 1.225000e-01   p_cons 2.960000e-01   p_joint 1.706500e-01

Outputting figure to mutsig2_images.part000000000055/EFHA2.4_1649_20000_0.1225_0.296_0.17065.png
                gene_name: EFHA2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
EFR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
EFR3A   10000 perm   2 sec   (6024 perm/sec)   p_kst 7.052000e-01   p_cons 3.015000e-01   p_joint 5.546000e-01

Outputting figure to mutsig2_images.part000000000055/EFR3A.4_2558_10000_0.7052_0.3015_0.5546.png
                gene_name: EFR3A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 51 percent done.
EHF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
KS ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
EHF   10000 perm   1 sec   (6948 perm/sec)   p_kst 7.484000e-01   p_cons 5.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EHF.4_935_10000_0.7484_0.5929_1.png
                gene_name: EHF
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
EID3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
KS ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
EID3   10000 perm   1 sec   (6787 perm/sec)   p_kst 3.430000e-02   p_cons 7.108000e-01   p_joint 7.340000e-02

Joint ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
Cons ci ratio: 1.771026e-02	ci left: 7.037567e-01	ci right 7.163822e-01	k: 14202	n:20000
KS ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
EID3   20000 perm   3 sec   (6162 perm/sec)   p_kst 3.490000e-02   p_cons 7.101000e-01   p_joint 6.870000e-02

Joint ci ratio: 7.379646e-02	ci left: 8.278542e-02	ci right 8.916169e-02	k: 2578	n:30000
Cons ci ratio: 1.442303e-02	ci left: 7.060011e-01	ci right 7.162913e-01	k: 21335	n:30000
KS ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
EID3   30000 perm   5 sec   (5888 perm/sec)   p_kst 3.570000e-02   p_cons 7.111667e-01   p_joint 8.593333e-02

Joint ci ratio: 5.707105e-02	ci left: 1.024811e-01	ci right 1.085263e-01	k: 4219	n:40000
Cons ci ratio: 1.250419e-02	ci left: 7.062538e-01	ci right 7.151656e-01	k: 28429	n:40000
KS ci ratio: 1.022737e-01	ci left: 3.361040e-02	ci right 3.725745e-02	k: 1416	n:40000
EID3   40000 perm   7 sec   (5721 perm/sec)   p_kst 3.540000e-02   p_cons 7.107250e-01   p_joint 1.054750e-01

Joint ci ratio: 6.600112e-02	ci left: 6.372084e-02	ci right 6.808972e-02	k: 3294	n:50000
Cons ci ratio: 1.118153e-02	ci left: 7.068238e-01	ci right 7.147917e-01	k: 35541	n:50000
KS ci ratio: 9.145655e-02	ci left: 3.381686e-02	ci right 3.707736e-02	k: 1771	n:50000
EID3   50000 perm   9 sec   (5573 perm/sec)   p_kst 3.542000e-02   p_cons 7.108200e-01   p_joint 6.588000e-02

Outputting figure to mutsig2_images.part000000000055/EID3.4_1006_50000_0.03542_0.71082_0.06588.png
                gene_name: EID3
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 55 percent done.
EIF4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 2.971065e-02	ci left: 6.255764e-01	ci right 6.445448e-01	k: 6351	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
EIF4A2   10000 perm   1 sec   (7147 perm/sec)   p_kst 6.510000e-02   p_cons 6.351000e-01   p_joint 9.490000e-02

Joint ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
Cons ci ratio: 2.090770e-02	ci left: 6.306425e-01	ci right 6.440176e-01	k: 12747	n:20000
KS ci ratio: 1.060452e-01	ci left: 6.054901e-02	ci right 6.737843e-02	k: 1278	n:20000
EIF4A2   20000 perm   3 sec   (6306 perm/sec)   p_kst 6.390000e-02   p_cons 6.373500e-01   p_joint 9.145000e-02

Joint ci ratio: 7.205264e-02	ci left: 8.655523e-02	ci right 9.305780e-02	k: 2693	n:30000
Cons ci ratio: 1.703749e-02	ci left: 6.327995e-01	ci right 6.437070e-01	k: 19148	n:30000
KS ci ratio: 8.633403e-02	ci left: 6.151734e-02	ci right 6.710074e-02	k: 1928	n:30000
EIF4A2   30000 perm   5 sec   (6036 perm/sec)   p_kst 6.426667e-02   p_cons 6.382667e-01   p_joint 8.976667e-02

Outputting figure to mutsig2_images.part000000000055/EIF4A2.4_1268_30000_0.064267_0.63827_0.089767.png
                gene_name: EIF4A2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 57 percent done.
EFCAB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
Cons ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
EFCAB7   10000 perm   1 sec   (6714 perm/sec)   p_kst 2.765000e-01   p_cons 7.417000e-01   p_joint 5.499000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB7.3_1942_10000_0.2765_0.7417_0.5499.png
                gene_name: EFCAB7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 60 percent done.
EGLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
EGLN3   10000 perm   1 sec   (7755 perm/sec)   p_kst 5.507000e-01   p_cons 6.030000e-02   p_joint 3.382000e-01

Joint ci ratio: 2.609546e-02	ci left: 5.231541e-01	ci right 5.370372e-01	k: 10602	n:20000
Cons ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
KS ci ratio: 2.498985e-02	ci left: 5.446754e-01	ci right 5.585096e-01	k: 11032	n:20000
EGLN3   20000 perm   3 sec   (6837 perm/sec)   p_kst 5.516000e-01   p_cons 5.945000e-02   p_joint 5.301000e-01

Joint ci ratio: 2.129452e-02	ci left: 5.247332e-01	ci right 5.360610e-01	k: 15912	n:30000
Cons ci ratio: 9.082027e-02	ci left: 5.580527e-02	ci right 6.114731e-02	k: 1753	n:30000
KS ci ratio: 2.036336e-02	ci left: 5.469519e-01	ci right 5.582379e-01	k: 16578	n:30000
EGLN3   30000 perm   5 sec   (6500 perm/sec)   p_kst 5.526000e-01   p_cons 5.843333e-02   p_joint 5.304000e-01

Outputting figure to mutsig2_images.part000000000055/EGLN3.3_740_30000_0.5526_0.058433_0.5304.png
                gene_name: EGLN3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 62 percent done.
EHBP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
Cons ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
EHBP1L1   10000 perm   2 sec   (5861 perm/sec)   p_kst 3.540000e-01   p_cons 7.811000e-01   p_joint 5.581000e-01

Outputting figure to mutsig2_images.part000000000055/EHBP1L1.3_4648_10000_0.354_0.7811_0.5581.png
                gene_name: EHBP1L1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 64 percent done.
EHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
EHD4   10000 perm   1 sec   (7619 perm/sec)   p_kst 8.690000e-02   p_cons 1.176000e-01   p_joint 1.408000e-01

Joint ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
Cons ci ratio: 7.605461e-02	ci left: 1.127730e-01	ci right 1.217386e-01	k: 2344	n:20000
KS ci ratio: 8.987697e-02	ci left: 8.293337e-02	ci right 9.078723e-02	k: 1736	n:20000
EHD4   20000 perm   3 sec   (6612 perm/sec)   p_kst 8.680000e-02   p_cons 1.172000e-01   p_joint 1.025500e-01

Outputting figure to mutsig2_images.part000000000055/EHD4.3_1650_20000_0.0868_0.1172_0.10255.png
                gene_name: EHD4
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 66 percent done.
EIF2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
KS ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
EIF2B3   10000 perm   1 sec   (6935 perm/sec)   p_kst 9.537000e-01   p_cons 5.015000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2B3.3_1440_10000_0.9537_0.5015_1.png
                gene_name: EIF2B3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
EIF2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
EIF2B4   10000 perm   1 sec   (6847 perm/sec)   p_kst 6.406000e-01   p_cons 4.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2B4.3_1718_10000_0.6406_0.4442_1.png
                gene_name: EIF2B4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
EIF2B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.408478e-02	ci left: 3.349839e-01	ci right 3.537069e-01	k: 3443	n:10000
Cons ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
KS ci ratio: 8.054346e-02	ci left: 1.837302e-01	ci right 1.992500e-01	k: 1914	n:10000
EIF2B5   10000 perm   1 sec   (6895 perm/sec)   p_kst 1.914000e-01   p_cons 7.702000e-01   p_joint 3.443000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2B5.3_2230_10000_0.1914_0.7702_0.3443.png
                gene_name: EIF2B5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 72 percent done.
EIF2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
KS ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
EIF2C3   10000 perm   1 sec   (6684 perm/sec)   p_kst 7.708000e-01   p_cons 1.178000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
KS ci ratio: 1.512783e-02	ci left: 7.646080e-01	ci right 7.763132e-01	k: 15410	n:20000
EIF2C3   20000 perm   3 sec   (5942 perm/sec)   p_kst 7.705000e-01   p_cons 1.178500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2C3.3_2659_20000_0.7705_0.11785_1.png
                gene_name: EIF2C3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
EIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
Cons ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
KS ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
EIF3B   10000 perm   2 sec   (6521 perm/sec)   p_kst 1.760000e-02   p_cons 7.080000e-02   p_joint 1.950000e-02

Joint ci ratio: 2.030133e-01	ci left: 1.644020e-02	ci right 2.020170e-02	k: 365	n:20000
Cons ci ratio: 1.018944e-01	ci left: 6.537877e-02	ci right 7.244718e-02	k: 1377	n:20000
KS ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
EIF3B   20000 perm   3 sec   (5788 perm/sec)   p_kst 1.640000e-02   p_cons 6.885000e-02   p_joint 1.825000e-02

Joint ci ratio: 1.838116e-01	ci left: 1.355952e-02	ci right 1.633558e-02	k: 447	n:30000
Cons ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
KS ci ratio: 1.838116e-01	ci left: 1.355952e-02	ci right 1.633558e-02	k: 447	n:30000
EIF3B   30000 perm   5 sec   (5489 perm/sec)   p_kst 1.490000e-02   p_cons 6.786667e-02   p_joint 1.490000e-02

Joint ci ratio: 1.348105e-01	ci left: 1.930292e-02	ci right 2.211726e-02	k: 827	n:40000
Cons ci ratio: 7.189702e-02	ci left: 6.668254e-02	ci right 7.168022e-02	k: 2766	n:40000
KS ci ratio: 1.635980e-01	ci left: 1.299143e-02	ci right 1.532988e-02	k: 565	n:40000
EIF3B   40000 perm   8 sec   (5321 perm/sec)   p_kst 1.412500e-02   p_cons 6.915000e-02   p_joint 2.067500e-02

Joint ci ratio: 1.233450e-01	ci left: 1.857744e-02	ci right 2.103876e-02	k: 989	n:50000
Cons ci ratio: 6.415497e-02	ci left: 6.724662e-02	ci right 7.172352e-02	k: 3473	n:50000
KS ci ratio: 1.394398e-01	ci left: 1.447405e-02	ci right 1.666272e-02	k: 777	n:50000
EIF3B   50000 perm   10 sec   (5184 perm/sec)   p_kst 1.554000e-02   p_cons 6.946000e-02   p_joint 1.978000e-02

Joint ci ratio: 1.131828e-01	ci left: 1.848956e-02	ci right 2.072391e-02	k: 1175	n:60000
Cons ci ratio: 5.897529e-02	ci left: 6.655713e-02	ci right 7.061806e-02	k: 4114	n:60000
KS ci ratio: 1.278904e-01	ci left: 1.442987e-02	ci right 1.641740e-02	k: 924	n:60000
EIF3B   60000 perm   12 sec   (5058 perm/sec)   p_kst 1.540000e-02   p_cons 6.856667e-02   p_joint 1.958333e-02

Joint ci ratio: 1.056544e-01	ci left: 1.826582e-02	ci right 2.031716e-02	k: 1349	n:70000
Cons ci ratio: 5.470360e-02	ci left: 6.647025e-02	ci right 7.022277e-02	k: 4783	n:70000
KS ci ratio: 1.197731e-01	ci left: 1.416800e-02	ci right 1.598681e-02	k: 1054	n:70000
EIF3B   70000 perm   14 sec   (4960 perm/sec)   p_kst 1.505714e-02   p_cons 6.832857e-02   p_joint 1.927143e-02

Joint ci ratio: 9.961892e-02	ci left: 1.804078e-02	ci right 1.994433e-02	k: 1518	n:80000
Cons ci ratio: 5.123814e-02	ci left: 6.642552e-02	ci right 6.993087e-02	k: 5453	n:80000
KS ci ratio: 1.131243e-01	ci left: 1.395033e-02	ci right 1.563513e-02	k: 1182	n:80000
EIF3B   80000 perm   17 sec   (4836 perm/sec)   p_kst 1.477500e-02   p_cons 6.816250e-02   p_joint 1.897500e-02

Joint ci ratio: 9.408668e-02	ci left: 1.803119e-02	ci right 1.982223e-02	k: 1702	n:90000
Cons ci ratio: 4.835752e-02	ci left: 6.639664e-02	ci right 6.969794e-02	k: 6123	n:90000
KS ci ratio: 1.069764e-01	ci left: 1.391303e-02	ci right 1.549625e-02	k: 1322	n:90000
EIF3B   90000 perm   19 sec   (4736 perm/sec)   p_kst 1.468889e-02   p_cons 6.803333e-02   p_joint 1.891111e-02

Joint ci ratio: 8.965101e-02	ci left: 1.791828e-02	ci right 1.960979e-02	k: 1875	n:100000
Cons ci ratio: 4.591019e-02	ci left: 6.638788e-02	ci right 6.951724e-02	k: 6794	n:100000
KS ci ratio: 1.020876e-01	ci left: 1.378770e-02	ci right 1.528065e-02	k: 1452	n:100000
EIF3B   100000 perm   22 sec   (4593 perm/sec)   p_kst 1.452000e-02   p_cons 6.794000e-02   p_joint 1.875000e-02

Joint ci ratio: 8.517655e-02	ci left: 1.808565e-02	ci right 1.970350e-02	k: 2077	n:110000
Cons ci ratio: 4.375640e-02	ci left: 6.651016e-02	ci right 6.949448e-02	k: 7479	n:110000
KS ci ratio: 9.688560e-02	ci left: 1.395270e-02	ci right 1.538215e-02	k: 1612	n:110000
EIF3B   110000 perm   24 sec   (4521 perm/sec)   p_kst 1.465455e-02   p_cons 6.799091e-02   p_joint 1.888182e-02

Outputting figure to mutsig2_images.part000000000055/EIF3B.3_2517_110000_0.014655_0.067991_0.018882.png
                gene_name: EIF3B
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 77 percent done.
EIF3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
EIF3H   10000 perm   1 sec   (7208 perm/sec)   p_kst 3.278000e-01   p_cons 5.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3H.3_1091_10000_0.3278_0.5084_1.png
                gene_name: EIF3H
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
EIF4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
Cons ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
KS ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
EIF4E   10000 perm   1 sec   (7372 perm/sec)   p_kst 8.491000e-01   p_cons 1.616000e-01   p_joint 8.943000e-01

Outputting figure to mutsig2_images.part000000000055/EIF4E.3_861_10000_0.8491_0.1616_0.8943.png
                gene_name: EIF4E
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 81 percent done.
EFEMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
KS ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
EFEMP1   10000 perm   1 sec   (6957 perm/sec)   p_kst 9.529000e-01   p_cons 7.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFEMP1.2_1522_10000_0.9529_0.7639_1.png
                gene_name: EFEMP1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
EFS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
KS ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
EFS   10000 perm   1 sec   (7215 perm/sec)   p_kst 2.115000e-01   p_cons 8.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFS.2_1710_10000_0.2115_0.8585_1.png
                gene_name: EFS
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
EGLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
KS ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
EGLN2   10000 perm   1 sec   (7478 perm/sec)   p_kst 6.742000e-01   p_cons 8.648000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000055/EGLN2.2_1244_10000_0.6742_0.8648_0.7715.png
                gene_name: EGLN2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 87 percent done.
EGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
Cons ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
KS ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
EGR1   10000 perm   1 sec   (7543 perm/sec)   p_kst 1.953000e-01   p_cons 5.180000e-01   p_joint 9.010000e-01

Outputting figure to mutsig2_images.part000000000055/EGR1.2_1640_10000_0.1953_0.518_0.901.png
                gene_name: EGR1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 89 percent done.
EGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
Cons ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
KS ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
EGR2   10000 perm   1 sec   (7315 perm/sec)   p_kst 8.914000e-01   p_cons 5.980000e-02   p_joint 1.924000e-01

Joint ci ratio: 5.759612e-02	ci left: 1.826057e-01	ci right 1.934851e-01	k: 3760	n:20000
Cons ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
KS ci ratio: 9.904499e-03	ci left: 8.823276e-01	ci right 8.911596e-01	k: 17736	n:20000
EGR2   20000 perm   3 sec   (6419 perm/sec)   p_kst 8.868000e-01   p_cons 6.555000e-02   p_joint 1.880000e-01

Joint ci ratio: 4.382567e-02	ci left: 2.058985e-01	ci right 2.151577e-01	k: 6315	n:30000
Cons ci ratio: 8.684030e-02	ci left: 6.083153e-02	ci right 6.638669e-02	k: 1907	n:30000
KS ci ratio: 8.179001e-03	ci left: 8.808292e-01	ci right 8.880961e-01	k: 26535	n:30000
EGR2   30000 perm   5 sec   (6103 perm/sec)   p_kst 8.845000e-01   p_cons 6.356667e-02   p_joint 2.105000e-01

Outputting figure to mutsig2_images.part000000000055/EGR2.2_1439_30000_0.8845_0.063567_0.2105.png
                gene_name: EGR2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 91 percent done.
EGR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
EGR4   10000 perm   1 sec   (7220 perm/sec)   p_kst 7.900000e-02   p_cons 4.310000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.305247e-01	ci left: 4.032708e-02	ci right 4.600670e-02	k: 862	n:20000
KS ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
EGR4   20000 perm   3 sec   (6369 perm/sec)   p_kst 8.225000e-02   p_cons 4.310000e-02   p_joint 1

Joint ci ratio: 6.229268e-03	ci left: 9.266467e-01	ci right 9.324698e-01	k: 27888	n:30000
Cons ci ratio: 1.059551e-01	ci left: 4.131689e-02	ci right 4.597201e-02	k: 1308	n:30000
KS ci ratio: 7.565708e-02	ci left: 7.901751e-02	ci right 8.526369e-02	k: 2463	n:30000
EGR4   30000 perm   5 sec   (6056 perm/sec)   p_kst 8.210000e-02   p_cons 4.360000e-02   p_joint 9.296000e-01

Joint ci ratio: 5.812658e-03	ci left: 9.164609e-01	ci right 9.218281e-01	k: 36767	n:40000
Cons ci ratio: 9.300209e-02	ci left: 4.054389e-02	ci right 4.452287e-02	k: 1700	n:40000
KS ci ratio: 6.577599e-02	ci left: 7.886133e-02	ci right 8.424960e-02	k: 3261	n:40000
EGR4   40000 perm   7 sec   (5848 perm/sec)   p_kst 8.152500e-02   p_cons 4.250000e-02   p_joint 9.191750e-01

Outputting figure to mutsig2_images.part000000000055/EGR4.2_1778_40000_0.081525_0.0425_0.91917.png
                gene_name: EGR4
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.92 

Current progress: 94 percent done.
EIF2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
KS ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
EIF2B2   10000 perm   1 sec   (7967 perm/sec)   p_kst 9.141000e-01   p_cons 7.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2B2.2_1088_10000_0.9141_0.7909_1.png
                gene_name: EIF2B2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
EIF2S3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
EIF2S3   10000 perm   1 sec   (7700 perm/sec)   p_kst 1.220000e-02   p_cons 9.605000e-01   p_joint 4.760000e-02

Joint ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
Cons ci ratio: 5.675704e-03	ci left: 9.569850e-01	ci right 9.624803e-01	k: 19196	n:20000
KS ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
EIF2S3   20000 perm   3 sec   (6818 perm/sec)   p_kst 1.210000e-02   p_cons 9.598000e-01   p_joint 2.035000e-02

Joint ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
Cons ci ratio: 4.683162e-03	ci left: 9.566604e-01	ci right 9.611835e-01	k: 28769	n:30000
KS ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
EIF2S3   30000 perm   5 sec   (6417 perm/sec)   p_kst 1.183333e-02   p_cons 9.589667e-01   p_joint 2.050000e-02

Joint ci ratio: 1.357340e-01	ci left: 1.903706e-02	ci right 2.183317e-02	k: 816	n:40000
Cons ci ratio: 4.053677e-03	ci left: 9.570107e-01	ci right 9.609223e-01	k: 38360	n:40000
KS ci ratio: 1.837459e-01	ci left: 1.021567e-02	ci right 1.230619e-02	k: 449	n:40000
EIF2S3   40000 perm   6 sec   (6181 perm/sec)   p_kst 1.122500e-02   p_cons 9.590000e-01   p_joint 2.040000e-02

Joint ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
Cons ci ratio: 3.656758e-03	ci left: 9.565314e-01	ci right 9.600551e-01	k: 47916	n:50000
KS ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
EIF2S3   50000 perm   8 sec   (5990 perm/sec)   p_kst 1.142000e-02   p_cons 9.583200e-01   p_joint 2.052000e-02

Joint ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
Cons ci ratio: 3.330512e-03	ci left: 9.568735e-01	ci right 9.600820e-01	k: 57510	n:60000
KS ci ratio: 1.494697e-01	ci left: 1.048566e-02	ci right 1.219543e-02	k: 679	n:60000
EIF2S3   60000 perm   10 sec   (5822 perm/sec)   p_kst 1.131667e-02   p_cons 9.585000e-01   p_joint 2.041667e-02

Joint ci ratio: 1.022323e-01	ci left: 1.951875e-02	ci right 2.163554e-02	k: 1439	n:70000
Cons ci ratio: 3.092227e-03	ci left: 9.567638e-01	ci right 9.597409e-01	k: 67079	n:70000
KS ci ratio: 1.371059e-01	ci left: 1.075092e-02	ci right 1.234710e-02	k: 807	n:70000
EIF2S3   70000 perm   12 sec   (5679 perm/sec)   p_kst 1.152857e-02   p_cons 9.582714e-01   p_joint 2.055714e-02

Joint ci ratio: 1.708916e-02	ci left: 3.933575e-01	ci right 4.001500e-01	k: 31740	n:80000
Cons ci ratio: 2.878747e-03	ci left: 9.572474e-01	ci right 9.600193e-01	k: 76692	n:80000
KS ci ratio: 1.273079e-01	ci left: 1.096635e-02	ci right 1.246937e-02	k: 936	n:80000
EIF2S3   80000 perm   14 sec   (5545 perm/sec)   p_kst 1.170000e-02   p_cons 9.586500e-01   p_joint 3.967500e-01

Joint ci ratio: 8.982501e-02	ci left: 1.979060e-02	ci right 2.166270e-02	k: 1864	n:90000
Cons ci ratio: 2.707409e-03	ci left: 9.575262e-01	ci right 9.601330e-01	k: 86296	n:90000
KS ci ratio: 1.200343e-01	ci left: 1.100769e-02	ci right 1.242405e-02	k: 1053	n:90000
EIF2S3   90000 perm   17 sec   (5422 perm/sec)   p_kst 1.170000e-02   p_cons 9.588444e-01   p_joint 2.071111e-02

Joint ci ratio: 8.492767e-02	ci left: 1.997334e-02	ci right 2.175460e-02	k: 2085	n:100000
Cons ci ratio: 2.572816e-03	ci left: 9.574585e-01	ci right 9.599348e-01	k: 95871	n:100000
KS ci ratio: 1.131008e-01	ci left: 1.119822e-02	ci right 1.255031e-02	k: 1186	n:100000
EIF2S3   100000 perm   19 sec   (5305 perm/sec)   p_kst 1.186000e-02   p_cons 9.587100e-01   p_joint 2.085000e-02

Joint ci ratio: 8.077072e-02	ci left: 2.011622e-02	ci right 2.181826e-02	k: 2305	n:110000
Cons ci ratio: 2.455904e-03	ci left: 9.574245e-01	ci right 9.597876e-01	k: 105448	n:110000
KS ci ratio: 1.081185e-01	ci left: 1.117021e-02	ci right 1.245572e-02	k: 1298	n:110000
EIF2S3   110000 perm   21 sec   (5187 perm/sec)   p_kst 1.180000e-02   p_cons 9.586182e-01   p_joint 2.095455e-02

Joint ci ratio: 7.712313e-02	ci left: 2.026157e-02	ci right 2.189502e-02	k: 2528	n:120000
Cons ci ratio: 2.352857e-03	ci left: 9.574238e-01	ci right 9.596873e-01	k: 115028	n:120000
KS ci ratio: 1.040028e-01	ci left: 1.109113e-02	ci right 1.231597e-02	k: 1403	n:120000
EIF2S3   120000 perm   24 sec   (5066 perm/sec)   p_kst 1.169167e-02   p_cons 9.585667e-01   p_joint 2.106667e-02

Joint ci ratio: 7.398382e-02	ci left: 2.035582e-02	ci right 2.192718e-02	k: 2747	n:130000
Cons ci ratio: 2.254110e-03	ci left: 9.576977e-01	ci right 9.598664e-01	k: 124643	n:130000
KS ci ratio: 9.982315e-02	ci left: 1.113753e-02	ci right 1.231517e-02	k: 1523	n:130000
EIF2S3   130000 perm   26 sec   (4976 perm/sec)   p_kst 1.171538e-02   p_cons 9.587923e-01   p_joint 2.113077e-02

Outputting figure to mutsig2_images.part000000000055/EIF2S3.2_1467_130000_0.011715_0.95879_0.021131.png
                gene_name: EIF2S3
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 98 percent done.
EIF4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
Cons ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
EIF4A1   10000 perm   1 sec   (7473 perm/sec)   p_kst 3.323000e-01   p_cons 2.557000e-01   p_joint 7.465000e-01

Outputting figure to mutsig2_images.part000000000055/EIF4A1.2_1265_10000_0.3323_0.2557_0.7465.png
                gene_name: EIF4A1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000055
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 55 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4421910: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000056> was used as the working directory.
Started at Wed Oct 24 17:42:14 2012
Results reported at Wed Oct 24 18:02:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000056.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000056.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 56  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000056.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1200.25 sec.
    Max Memory :      5384 MB
    Max Swap   :      7741 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
56
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 56
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 56: processing genes 4977 - 5066
Calculating significance of each gene.
Using projection method.
4977	EIF4E1B	4.183220e-01
4978	EIF4E2	1.421492e-01
4979	EIF4E3	2.020283e-01
4980	EIF4EBP1	1
4981	EIF4EBP2	1
4982	EIF4EBP3	1
4983	EIF4ENIF1	9.976173e-01
4984	EIF4G1	9.999254e-01
4985	EIF4G2	1
4986	EIF4G3	1.037597e-01
4987	EIF4H	2.977659e-01
4988	EIF5	6.109758e-01
4989	EIF5A	1
4990	EIF5A2	1
4991	EIF5AL1	1
4992	EIF5B	9.430569e-01
4993	EIF6	8.568238e-01
4994	ELAC1	8.786452e-01
4995	ELAC2	7.093248e-01
4996	ELANE	7.448639e-01
4997	ELAVL1	4.895838e-01
4998	ELAVL2	8.423698e-01
4999	ELAVL3	1
5000/18094 5000	ELAVL4	3.679987e-01
5001	ELF1	2.344008e-01
5002	ELF2	4.934175e-01
5003	ELF3	4.999804e-01
5004	ELF4	1
5005	ELF5	1
5006	ELFN2	9.609559e-01
5007	ELK1	4.062312e-01
5008	ELK3	4.385468e-01
5009	ELK4	3.451275e-01
5010	ELL	1
5011	ELL2	5.515763e-01
5012	ELL3	7.222305e-01
5013	ELMO1	6.824710e-01
5014	ELMO2	2.901702e-01
5015	ELMO3	1
5016	ELMOD1	7.776315e-03
5017	ELMOD2	2.804195e-01
5018	ELMOD3	8.766184e-01
5019	ELN	1
5020	ELOF1	1
5021	ELOVL1	1
5022	ELOVL2	8.721066e-02
5023	ELOVL3	1
5024	ELOVL4	6.279599e-01
5025	ELOVL5	1
5026	ELOVL6	7.616448e-01
5027	ELOVL7	4.296434e-01
5028	ELP2	8.361057e-01
5029	ELP3	1
5030	ELP4	1.116852e-02
5031	ELSPBP1	5.661778e-02
5032	ELTD1	1.390719e-09
5033	EMB	1
5034	EMCN	1.647826e-01
5035	EMD	1.586520e-01
5036	EME1	6.533267e-01
5037	EME2	7.277637e-01
5038	EMG1	7.448654e-01
5039	EMID1	8.625954e-01
5040	EMID2	1
5041	EMILIN1	1.747182e-01
5042	EMILIN2	9.611056e-01
5043	EMILIN3	4.441244e-01
5044	EML1	5.273237e-01
5045	EML2	7.498571e-01
5046	EML3	9.947631e-01
5047	EML4	9.859408e-01
5048	EML5	9.755227e-01
5049	EMP1	1
5050	EMP2	6.131897e-01
5051	EMP3	1
5052	EMR1	1
5053	EMR2	1
5054	EMR3	3.425424e-01
5055	EMX1	5.261104e-01
5056	EMX2	2.500464e-01
5057	EN1	6.003446e-01
5058	EN2	5.321891e-01
5059	ENAH	2.325752e-01
5060	ENAM	1.941307e-01
5061	ENC1	8.733602e-01
5062	ENDOD1	6.912158e-01
5063	ENDOG	1
5064	ENDOU	9.181829e-01
5065	ENG	3.020349e-01
5066	ENGASE	9.826711e-01
Done

Running MutSig 2:
Scatter job 56: processing genes 4977 - 5066
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ELTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
ELTD1   10000 perm   2 sec   (4965 perm/sec)   p_kst 6.082000e-01   p_cons 5.420000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELTD1.20_2133_10000_0.6082_0.542_1.png
                gene_name: ELTD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
EIF4G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
Cons ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
EIF4G3   10000 perm   2 sec   (4581 perm/sec)   p_kst 4.300000e-03   p_cons 4.010000e-01   p_joint 3.030000e-02

Joint ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
Cons ci ratio: 3.303242e-02	ci left: 4.063139e-01	ci right 4.200114e-01	k: 8263	n:20000
KS ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
EIF4G3   20000 perm   5 sec   (4195 perm/sec)   p_kst 4.400000e-03   p_cons 4.131500e-01   p_joint 1.660000e-02

Joint ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
Cons ci ratio: 2.685984e-02	ci left: 4.095825e-01	ci right 4.207672e-01	k: 12455	n:30000
KS ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
EIF4G3   30000 perm   7 sec   (4059 perm/sec)   p_kst 4.266667e-03   p_cons 4.151667e-01   p_joint 9.133333e-03

Joint ci ratio: 2.098245e-01	ci left: 7.742128e-03	ci right 9.580270e-03	k: 345	n:40000
Cons ci ratio: 2.329243e-02	ci left: 4.096911e-01	ci right 4.193713e-01	k: 16581	n:40000
KS ci ratio: 2.915178e-01	ci left: 3.844594e-03	ci right 5.178911e-03	k: 179	n:40000
EIF4G3   40000 perm   10 sec   (3966 perm/sec)   p_kst 4.475000e-03   p_cons 4.145250e-01   p_joint 8.625000e-03

Joint ci ratio: 1.696913e-01	ci left: 9.663382e-03	ci right 1.147412e-02	k: 527	n:50000
Cons ci ratio: 2.075160e-02	ci left: 4.121140e-01	ci right 4.207757e-01	k: 20822	n:50000
KS ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
EIF4G3   50000 perm   13 sec   (3892 perm/sec)   p_kst 4.620000e-03   p_cons 4.164400e-01   p_joint 1.054000e-02

Joint ci ratio: 9.724720e-02	ci left: 2.508298e-02	ci right 2.766311e-02	k: 1581	n:60000
Cons ci ratio: 1.815476e-02	ci left: 4.332757e-01	ci right 4.412304e-01	k: 26235	n:60000
KS ci ratio: 2.345587e-01	ci left: 4.089995e-03	ci right 5.192096e-03	k: 277	n:60000
EIF4G3   60000 perm   16 sec   (3822 perm/sec)   p_kst 4.616667e-03   p_cons 4.372500e-01   p_joint 2.635000e-02

Joint ci ratio: 1.180799e-01	ci left: 1.458400e-02	ci right 1.642790e-02	k: 1084	n:70000
Cons ci ratio: 1.684745e-02	ci left: 4.324220e-01	ci right 4.397833e-01	k: 30527	n:70000
KS ci ratio: 2.130199e-01	ci left: 4.301468e-03	ci right 5.340234e-03	k: 336	n:70000
EIF4G3   70000 perm   19 sec   (3762 perm/sec)   p_kst 4.800000e-03   p_cons 4.361000e-01   p_joint 1.548571e-02

Joint ci ratio: 1.248372e-01	ci left: 1.141443e-02	ci right 1.294625e-02	k: 973	n:80000
Cons ci ratio: 1.575699e-02	ci left: 4.327347e-01	ci right 4.396199e-01	k: 34894	n:80000
KS ci ratio: 2.027682e-01	ci left: 4.178490e-03	ci right 5.132979e-03	k: 371	n:80000
EIF4G3   80000 perm   22 sec   (3704 perm/sec)   p_kst 4.637500e-03   p_cons 4.361750e-01   p_joint 1.216250e-02

Joint ci ratio: 1.215008e-01	ci left: 1.073821e-02	ci right 1.213799e-02	k: 1028	n:90000
Cons ci ratio: 1.483902e-02	ci left: 4.334895e-01	ci right 4.399812e-01	k: 39306	n:90000
KS ci ratio: 1.929163e-01	ci left: 4.126079e-03	ci right 5.017427e-03	k: 410	n:90000
EIF4G3   90000 perm   25 sec   (3649 perm/sec)   p_kst 4.555556e-03   p_cons 4.367333e-01   p_joint 1.142222e-02

Joint ci ratio: 1.163166e-01	ci left: 1.057639e-02	ci right 1.189219e-02	k: 1122	n:100000
Cons ci ratio: 1.408624e-02	ci left: 4.333531e-01	ci right 4.395106e-01	k: 43643	n:100000
KS ci ratio: 1.829495e-01	ci left: 4.151846e-03	ci right 4.997285e-03	k: 456	n:100000
EIF4G3   100000 perm   28 sec   (3594 perm/sec)   p_kst 4.560000e-03   p_cons 4.364300e-01   p_joint 1.122000e-02

Joint ci ratio: 9.775025e-02	ci left: 1.370426e-02	ci right 1.512151e-02	k: 1584	n:110000
Cons ci ratio: 1.342484e-02	ci left: 4.337117e-01	ci right 4.395826e-01	k: 48031	n:110000
KS ci ratio: 1.736909e-01	ci left: 4.208683e-03	ci right 5.017777e-03	k: 506	n:110000
EIF4G3   110000 perm   31 sec   (3544 perm/sec)   p_kst 4.600000e-03   p_cons 4.366455e-01   p_joint 1.440000e-02

Joint ci ratio: 1.061264e-01	ci left: 1.064471e-02	ci right 1.184575e-02	k: 1348	n:120000
Cons ci ratio: 1.284777e-02	ci left: 4.340494e-01	ci right 4.396703e-01	k: 52423	n:120000
KS ci ratio: 1.679970e-01	ci left: 4.137143e-03	ci right 4.903772e-03	k: 541	n:120000
EIF4G3   120000 perm   34 sec   (3494 perm/sec)   p_kst 4.508333e-03   p_cons 4.368583e-01   p_joint 1.123333e-02

Joint ci ratio: 9.609566e-02	ci left: 1.203075e-02	ci right 1.325267e-02	k: 1642	n:130000
Cons ci ratio: 1.233884e-02	ci left: 4.343551e-01	ci right 4.397554e-01	k: 56817	n:130000
KS ci ratio: 1.626870e-01	ci left: 4.084358e-03	ci right 4.814941e-03	k: 577	n:130000
EIF4G3   130000 perm   38 sec   (3448 perm/sec)   p_kst 4.438462e-03   p_cons 4.370538e-01   p_joint 1.263077e-02

Joint ci ratio: 9.526339e-02	ci left: 1.138039e-02	ci right 1.252567e-02	k: 1672	n:140000
Cons ci ratio: 1.189132e-02	ci left: 4.343995e-01	ci right 4.396031e-01	k: 61180	n:140000
KS ci ratio: 1.567011e-01	ci left: 4.101206e-03	ci right 4.805275e-03	k: 622	n:140000
EIF4G3   140000 perm   41 sec   (3404 perm/sec)   p_kst 4.442857e-03   p_cons 4.370000e-01   p_joint 1.194286e-02

Joint ci ratio: 9.243855e-02	ci left: 1.129873e-02	ci right 1.240026e-02	k: 1776	n:150000
Cons ci ratio: 1.147396e-02	ci left: 4.350940e-01	ci right 4.401217e-01	k: 65641	n:150000
KS ci ratio: 1.507650e-01	ci left: 4.148314e-03	ci right 4.831058e-03	k: 672	n:150000
EIF4G3   150000 perm   45 sec   (3362 perm/sec)   p_kst 4.480000e-03   p_cons 4.376067e-01   p_joint 1.184000e-02

Joint ci ratio: 9.260503e-02	ci left: 1.056185e-02	ci right 1.159348e-02	k: 1771	n:160000
Cons ci ratio: 1.109751e-02	ci left: 4.357106e-01	ci right 4.405791e-01	k: 70103	n:160000
KS ci ratio: 1.459640e-01	ci left: 4.159856e-03	ci right 4.820797e-03	k: 717	n:160000
EIF4G3   160000 perm   48 sec   (3320 perm/sec)   p_kst 4.481250e-03   p_cons 4.381437e-01   p_joint 1.106875e-02

Joint ci ratio: 9.211167e-02	ci left: 1.005537e-02	ci right 1.103202e-02	k: 1791	n:170000
Cons ci ratio: 1.076585e-02	ci left: 4.357984e-01	ci right 4.405214e-01	k: 74487	n:170000
KS ci ratio: 1.417811e-01	ci left: 4.158996e-03	ci right 4.799261e-03	k: 760	n:170000
EIF4G3   170000 perm   52 sec   (3278 perm/sec)   p_kst 4.470588e-03   p_cons 4.381588e-01   p_joint 1.053529e-02

Joint ci ratio: 1.013031e-01	ci left: 7.831872e-03	ci right 8.672970e-03	k: 1484	n:180000
Cons ci ratio: 1.091278e-02	ci left: 4.152537e-01	ci right 4.198156e-01	k: 75156	n:180000
KS ci ratio: 1.386328e-01	ci left: 4.115557e-03	ci right 4.733904e-03	k: 795	n:180000
EIF4G3   180000 perm   56 sec   (3238 perm/sec)   p_kst 4.416667e-03   p_cons 4.175333e-01   p_joint 8.244444e-03

Joint ci ratio: 8.950375e-02	ci left: 9.547171e-03	ci right 1.044682e-02	k: 1898	n:190000
Cons ci ratio: 1.061613e-02	ci left: 4.155705e-01	ci right 4.200110e-01	k: 79380	n:190000
KS ci ratio: 1.349532e-01	ci left: 4.122604e-03	ci right 4.724249e-03	k: 839	n:190000
EIF4G3   190000 perm   59 sec   (3198 perm/sec)   p_kst 4.415789e-03   p_cons 4.177895e-01   p_joint 9.989474e-03

Joint ci ratio: 8.464398e-02	ci left: 1.016068e-02	ci right 1.106359e-02	k: 2121	n:200000
Cons ci ratio: 1.035562e-02	ci left: 4.152375e-01	ci right 4.195649e-01	k: 83480	n:200000
KS ci ratio: 1.317766e-01	ci left: 4.114633e-03	ci right 4.699874e-03	k: 880	n:200000
EIF4G3   200000 perm   63 sec   (3161 perm/sec)   p_kst 4.400000e-03   p_cons 4.174000e-01   p_joint 1.060500e-02

Joint ci ratio: 8.321204e-02	ci left: 1.002179e-02	ci right 1.089656e-02	k: 2195	n:210000
Cons ci ratio: 1.010348e-02	ci left: 4.154134e-01	ci right 4.196365e-01	k: 87680	n:210000
KS ci ratio: 1.286742e-01	ci left: 4.116790e-03	ci right 4.687499e-03	k: 923	n:210000
EIF4G3   210000 perm   67 sec   (3124 perm/sec)   p_kst 4.395238e-03   p_cons 4.175238e-01   p_joint 1.045238e-02

Joint ci ratio: 8.420573e-02	ci left: 9.343603e-03	ci right 1.016939e-02	k: 2145	n:220000
Cons ci ratio: 9.881183e-03	ci left: 4.149703e-01	ci right 4.190955e-01	k: 91747	n:220000
KS ci ratio: 1.261090e-01	ci left: 4.096883e-03	ci right 4.652663e-03	k: 961	n:220000
EIF4G3   220000 perm   71 sec   (3089 perm/sec)   p_kst 4.368182e-03   p_cons 4.170318e-01   p_joint 9.750000e-03

Joint ci ratio: 8.330776e-02	ci left: 9.137387e-03	ci right 9.935916e-03	k: 2192	n:230000
Cons ci ratio: 9.667908e-03	ci left: 4.148187e-01	ci right 4.188529e-01	k: 95872	n:230000
KS ci ratio: 1.231973e-01	ci left: 4.112524e-03	ci right 4.656604e-03	k: 1007	n:230000
EIF4G3   230000 perm   75 sec   (3056 perm/sec)   p_kst 4.378261e-03   p_cons 4.168348e-01   p_joint 9.530435e-03

Joint ci ratio: 8.184941e-02	ci left: 9.079020e-03	ci right 9.857896e-03	k: 2271	n:240000
Cons ci ratio: 9.468601e-03	ci left: 4.146432e-01	ci right 4.185921e-01	k: 99988	n:240000
KS ci ratio: 1.208243e-01	ci left: 4.102747e-03	ci right 4.634332e-03	k: 1047	n:240000
EIF4G3   240000 perm   79 sec   (3022 perm/sec)   p_kst 4.362500e-03   p_cons 4.166167e-01   p_joint 9.462500e-03

Joint ci ratio: 8.041325e-02	ci left: 9.037196e-03	ci right 9.798243e-03	k: 2353	n:250000
Cons ci ratio: 9.277846e-03	ci left: 4.146545e-01	ci right 4.185235e-01	k: 104147	n:250000
KS ci ratio: 1.181479e-01	ci left: 4.124902e-03	ci right 4.646691e-03	k: 1095	n:250000
EIF4G3   250000 perm   84 sec   (2990 perm/sec)   p_kst 4.380000e-03   p_cons 4.165880e-01   p_joint 9.412000e-03

Joint ci ratio: 7.867604e-02	ci left: 9.085433e-03	ci right 9.833255e-03	k: 2458	n:260000
Cons ci ratio: 9.095727e-03	ci left: 4.147963e-01	ci right 4.185902e-01	k: 108340	n:260000
KS ci ratio: 1.152377e-01	ci left: 4.175356e-03	ci right 4.689633e-03	k: 1151	n:260000
EIF4G3   260000 perm   88 sec   (2959 perm/sec)   p_kst 4.426923e-03   p_cons 4.166923e-01   p_joint 9.453846e-03

Joint ci ratio: 7.806758e-02	ci left: 8.890514e-03	ci right 9.616375e-03	k: 2497	n:270000
Cons ci ratio: 8.929913e-03	ci left: 4.146025e-01	ci right 4.183252e-01	k: 112445	n:270000
KS ci ratio: 1.135761e-01	ci left: 4.143031e-03	ci right 4.645476e-03	k: 1185	n:270000
EIF4G3   270000 perm   92 sec   (2927 perm/sec)   p_kst 4.388889e-03   p_cons 4.164630e-01   p_joint 9.248148e-03

Joint ci ratio: 7.584528e-02	ci left: 9.091431e-03	ci right 9.811634e-03	k: 2645	n:280000
Cons ci ratio: 8.764792e-03	ci left: 4.148694e-01	ci right 4.185252e-01	k: 116675	n:280000
KS ci ratio: 1.121229e-01	ci left: 4.102650e-03	ci right 4.593410e-03	k: 1216	n:280000
EIF4G3   280000 perm   97 sec   (2896 perm/sec)   p_kst 4.342857e-03   p_cons 4.166964e-01   p_joint 9.446429e-03

Joint ci ratio: 7.244019e-02	ci left: 9.634274e-03	ci right 1.036178e-02	k: 2898	n:290000
Cons ci ratio: 8.609356e-03	ci left: 4.150702e-01	ci right 4.186625e-01	k: 120891	n:290000
KS ci ratio: 1.106794e-01	ci left: 4.068446e-03	ci right 4.548440e-03	k: 1248	n:290000
EIF4G3   290000 perm   101 sec   (2866 perm/sec)   p_kst 4.303448e-03   p_cons 4.168655e-01   p_joint 9.993103e-03

Joint ci ratio: 6.803940e-02	ci left: 1.057084e-02	ci right 1.131866e-02	k: 3282	n:300000
Cons ci ratio: 8.459412e-03	ci left: 4.154013e-01	ci right 4.189336e-01	k: 125150	n:300000
KS ci ratio: 1.083597e-01	ci left: 4.107905e-03	ci right 4.581749e-03	k: 1302	n:300000
EIF4G3   300000 perm   106 sec   (2838 perm/sec)   p_kst 4.340000e-03   p_cons 4.171667e-01   p_joint 1.094000e-02

Joint ci ratio: 6.772909e-02	ci left: 1.032810e-02	ci right 1.105528e-02	k: 3313	n:310000
Cons ci ratio: 8.321282e-03	ci left: 4.154634e-01	ci right 4.189382e-01	k: 129332	n:310000
KS ci ratio: 1.066946e-01	ci left: 4.104092e-03	ci right 4.569765e-03	k: 1343	n:310000
EIF4G3   310000 perm   110 sec   (2809 perm/sec)   p_kst 4.332258e-03   p_cons 4.172000e-01   p_joint 1.068710e-02

Joint ci ratio: 6.935516e-02	ci left: 9.541425e-03	ci right 1.022999e-02	k: 3162	n:320000
Cons ci ratio: 8.187443e-03	ci left: 4.156563e-01	ci right 4.190765e-01	k: 133557	n:320000
KS ci ratio: 1.052184e-01	ci left: 4.091441e-03	ci right 4.548857e-03	k: 1381	n:320000
EIF4G3   320000 perm   115 sec   (2779 perm/sec)   p_kst 4.315625e-03   p_cons 4.173656e-01   p_joint 9.881250e-03

Joint ci ratio: 6.933246e-02	ci left: 9.261178e-03	ci right 9.929295e-03	k: 3165	n:330000
Cons ci ratio: 8.058905e-03	ci left: 4.158954e-01	ci right 4.192636e-01	k: 137801	n:330000
KS ci ratio: 1.037651e-01	ci left: 4.082550e-03	ci right 4.532284e-03	k: 1420	n:330000
EIF4G3   330000 perm   120 sec   (2752 perm/sec)   p_kst 4.303030e-03   p_cons 4.175788e-01   p_joint 9.590909e-03

Joint ci ratio: 6.841057e-02	ci left: 9.237371e-03	ci right 9.894558e-03	k: 3251	n:340000
Cons ci ratio: 7.940939e-03	ci left: 4.158328e-01	ci right 4.191510e-01	k: 141947	n:340000
KS ci ratio: 1.025823e-01	ci left: 4.057026e-03	ci right 4.498547e-03	k: 1453	n:340000
EIF4G3   340000 perm   125 sec   (2724 perm/sec)   p_kst 4.273529e-03   p_cons 4.174912e-01   p_joint 9.561765e-03

Joint ci ratio: 6.806179e-02	ci left: 9.068905e-03	ci right 9.710686e-03	k: 3285	n:350000
Cons ci ratio: 7.823776e-03	ci left: 4.160368e-01	ci right 4.193074e-01	k: 146185	n:350000
KS ci ratio: 1.011322e-01	ci left: 4.058054e-03	ci right 4.493073e-03	k: 1495	n:350000
EIF4G3   350000 perm   130 sec   (2697 perm/sec)   p_kst 4.271429e-03   p_cons 4.176714e-01   p_joint 9.385714e-03

Joint ci ratio: 6.767693e-02	ci left: 8.920732e-03	ci right 9.548317e-03	k: 3323	n:360000
Cons ci ratio: 7.711385e-03	ci left: 4.162465e-01	ci right 4.194715e-01	k: 150429	n:360000
KS ci ratio: 9.993786e-02	ci left: 4.042815e-03	ci right 4.470781e-03	k: 1531	n:360000
EIF4G3   360000 perm   135 sec   (2671 perm/sec)   p_kst 4.252778e-03   p_cons 4.178583e-01   p_joint 9.230556e-03

Outputting figure to mutsig2_images.part000000000056/EIF4G3.13_4878_360000_0.0042528_0.41786_0.0092306.png
                gene_name: EIF4G3
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.0092 
     ci_joint_bounds_left: 0.0089 
    ci_joint_bounds_right: 0.0095 

Current progress: 4 percent done.
ELMO1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
Cons ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
ELMO1   10000 perm   2 sec   (5543 perm/sec)   p_kst 7.394000e-01   p_cons 4.527000e-01   p_joint 7.725000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO1.11_2268_10000_0.7394_0.4527_0.7725.png
                gene_name: ELMO1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 5 percent done.
ENAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
ENAM   10000 perm   2 sec   (5057 perm/sec)   p_kst 8.986000e-01   p_cons 2.419000e-01   p_joint 7.309000e-01

Outputting figure to mutsig2_images.part000000000056/ENAM.12_3461_10000_0.8986_0.2419_0.7309.png
                gene_name: ENAM
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 7 percent done.
EMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
Cons ci ratio: 1.177489e-02	ci left: 9.117293e-01	ci right 9.226262e-01	k: 9173	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
EMR1   10000 perm   2 sec   (5529 perm/sec)   p_kst 4.021000e-01   p_cons 9.173000e-01   p_joint 6.615000e-01

Outputting figure to mutsig2_images.part000000000056/EMR1.10_2745_10000_0.4021_0.9173_0.6615.png
                gene_name: EMR1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 9 percent done.
EIF5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
Cons ci ratio: 8.478738e-02	ci left: 1.685812e-01	ci right 1.836080e-01	k: 1760	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
EIF5B   10000 perm   2 sec   (5137 perm/sec)   p_kst 3.585000e-01   p_cons 1.760000e-01   p_joint 3.250000e-01

Outputting figure to mutsig2_images.part000000000056/EIF5B.9_3759_10000_0.3585_0.176_0.325.png
                gene_name: EIF5B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 11 percent done.
EMILIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
EMILIN1   10000 perm   2 sec   (5501 perm/sec)   p_kst 1.836000e-01   p_cons 7.112000e-01   p_joint 3.314000e-01

Outputting figure to mutsig2_images.part000000000056/EMILIN1.9_3083_10000_0.1836_0.7112_0.3314.png
                gene_name: EMILIN1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 12 percent done.
EIF4G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
Cons ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
KS ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
EIF4G1   10000 perm   2 sec   (5085 perm/sec)   p_kst 3.965000e-01   p_cons 8.244000e-01   p_joint 6.222000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G1.8_4924_10000_0.3965_0.8244_0.6222.png
                gene_name: EIF4G1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
ELF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
Cons ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
KS ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
ELF1   10000 perm   2 sec   (5851 perm/sec)   p_kst 4.633000e-01   p_cons 6.727000e-01   p_joint 6.778000e-01

Outputting figure to mutsig2_images.part000000000056/ELF1.7_1892_10000_0.4633_0.6727_0.6778.png
                gene_name: ELF1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 16 percent done.
ELMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
KS ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
ELMO2   10000 perm   2 sec   (5888 perm/sec)   p_kst 3.582000e-01   p_cons 8.854000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO2.7_2243_10000_0.3582_0.8854_0.4799.png
                gene_name: ELMO2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
ELP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
Cons ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
KS ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
ELP4   10000 perm   1 sec   (6901 perm/sec)   p_kst 7.028000e-01   p_cons 3.342000e-01   p_joint 5.739000e-01

Outputting figure to mutsig2_images.part000000000056/ELP4.7_1315_10000_0.7028_0.3342_0.5739.png
                gene_name: ELP4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 20 percent done.
EMILIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
Cons ci ratio: 1.343032e-02	ci left: 8.888262e-01	ci right 9.009427e-01	k: 8950	n:10000
KS ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
EMILIN3   10000 perm   2 sec   (6062 perm/sec)   p_kst 2.856000e-01   p_cons 8.950000e-01   p_joint 5.087000e-01

Outputting figure to mutsig2_images.part000000000056/EMILIN3.7_2317_10000_0.2856_0.895_0.5087.png
                gene_name: EMILIN3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
ENAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
Cons ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
KS ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
ENAH   10000 perm   2 sec   (5790 perm/sec)   p_kst 1.619000e-01   p_cons 1.692000e-01   p_joint 9.530000e-02

Joint ci ratio: 7.069307e-02	ci left: 1.285194e-01	ci right 1.379875e-01	k: 2664	n:20000
Cons ci ratio: 6.105161e-02	ci left: 1.656569e-01	ci right 1.761390e-01	k: 3417	n:20000
KS ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
ENAH   20000 perm   4 sec   (5209 perm/sec)   p_kst 1.613500e-01   p_cons 1.708500e-01   p_joint 1.332000e-01

Outputting figure to mutsig2_images.part000000000056/ENAH.7_1836_20000_0.16135_0.17085_0.1332.png
                gene_name: ENAH
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 23 percent done.
ELMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
Cons ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
KS ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
ELMOD1   10000 perm   2 sec   (5993 perm/sec)   p_kst 5.035000e-01   p_cons 6.156000e-01   p_joint 6.278000e-01

Outputting figure to mutsig2_images.part000000000056/ELMOD1.6_1049_10000_0.5035_0.6156_0.6278.png
                gene_name: ELMOD1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 25 percent done.
ELAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
ELAC2   10000 perm   2 sec   (5815 perm/sec)   p_kst 3.275000e-01   p_cons 2.997000e-01   p_joint 3.817000e-01

Outputting figure to mutsig2_images.part000000000056/ELAC2.5_2577_10000_0.3275_0.2997_0.3817.png
                gene_name: ELAC2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
ELF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
ELF2   10000 perm   2 sec   (6635 perm/sec)   p_kst 8.869000e-01   p_cons 6.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELF2.5_1876_10000_0.8869_0.6254_1.png
                gene_name: ELF2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
ELFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
KS ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
ELFN2   10000 perm   2 sec   (5803 perm/sec)   p_kst 1.800000e-01   p_cons 2.433000e-01   p_joint 2.226000e-01

Outputting figure to mutsig2_images.part000000000056/ELFN2.5_2467_10000_0.18_0.2433_0.2226.png
                gene_name: ELFN2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 30 percent done.
ELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
Cons ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
KS ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
ELL2   10000 perm   2 sec   (5855 perm/sec)   p_kst 4.398000e-01   p_cons 1.697000e-01   p_joint 3.910000e-01

Outputting figure to mutsig2_images.part000000000056/ELL2.5_1971_10000_0.4398_0.1697_0.391.png
                gene_name: ELL2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 32 percent done.
EML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
EML1   10000 perm   2 sec   (5992 perm/sec)   p_kst 4.156000e-01   p_cons 1.401000e-01   p_joint 2.639000e-01

Outputting figure to mutsig2_images.part000000000056/EML1.5_2597_10000_0.4156_0.1401_0.2639.png
                gene_name: EML1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 34 percent done.
EML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
KS ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
EML2   10000 perm   2 sec   (6042 perm/sec)   p_kst 9.504000e-01   p_cons 7.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EML2.5_2026_10000_0.9504_0.7616_1.png
                gene_name: EML2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
EMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
Cons ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
KS ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
EMR3   10000 perm   2 sec   (6381 perm/sec)   p_kst 5.698000e-01   p_cons 3.120000e-01   p_joint 6.376000e-01

Outputting figure to mutsig2_images.part000000000056/EMR3.5_2023_10000_0.5698_0.312_0.6376.png
                gene_name: EMR3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 38 percent done.
ENG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
Cons ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
KS ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
ENG   10000 perm   2 sec   (6396 perm/sec)   p_kst 4.479000e-01   p_cons 3.813000e-01   p_joint 4.667000e-01

Outputting figure to mutsig2_images.part000000000056/ENG.5_2063_10000_0.4479_0.3813_0.4667.png
                gene_name: ENG
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
ELAVL2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
KS ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
ELAVL2   10000 perm   1 sec   (7198 perm/sec)   p_kst 4.034000e-01   p_cons 4.076000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL2.3_1104_10000_0.4034_0.4076_0.4286.png
                gene_name: ELAVL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 41 percent done.
ELK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
Cons ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
KS ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
ELK4   10000 perm   2 sec   (6383 perm/sec)   p_kst 4.845000e-01   p_cons 6.409000e-01   p_joint 7.460000e-01

Outputting figure to mutsig2_images.part000000000056/ELK4.4_1450_10000_0.4845_0.6409_0.746.png
                gene_name: ELK4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 43 percent done.
ELOVL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
Cons ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
KS ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
ELOVL2   10000 perm   1 sec   (7200 perm/sec)   p_kst 6.151000e-01   p_cons 3.365000e-01   p_joint 7.013000e-01

Outputting figure to mutsig2_images.part000000000056/ELOVL2.4_923_10000_0.6151_0.3365_0.7013.png
                gene_name: ELOVL2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 45 percent done.
ELP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
Cons ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
KS ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
ELP2   10000 perm   2 sec   (6291 perm/sec)   p_kst 5.046000e-01   p_cons 5.010000e-02   p_joint 2.561000e-01

Joint ci ratio: 6.136585e-02	ci left: 1.642247e-01	ci right 1.746715e-01	k: 3388	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 2.779144e-02	ci left: 4.916961e-01	ci right 5.056043e-01	k: 9973	n:20000
ELP2   20000 perm   4 sec   (5613 perm/sec)   p_kst 4.986500e-01   p_cons 5.025000e-02   p_joint 1.694000e-01

Joint ci ratio: 4.965605e-02	ci left: 1.677119e-01	ci right 1.762851e-01	k: 5159	n:30000
Cons ci ratio: 9.823677e-02	ci left: 4.791886e-02	ci right 5.290200e-02	k: 1511	n:30000
KS ci ratio: 2.262949e-02	ci left: 4.943590e-01	ci right 5.057077e-01	k: 15001	n:30000
ELP2   30000 perm   6 sec   (5354 perm/sec)   p_kst 5.000333e-01   p_cons 5.036667e-02   p_joint 1.719667e-01

Outputting figure to mutsig2_images.part000000000056/ELP2.4_2569_30000_0.50003_0.050367_0.17197.png
                gene_name: ELP2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
ELSPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
Cons ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
KS ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
ELSPBP1   10000 perm   1 sec   (6783 perm/sec)   p_kst 2.255000e-01   p_cons 6.180000e-02   p_joint 1.211000e-01

Joint ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
Cons ci ratio: 1.072141e-01	ci left: 5.928153e-02	ci right 6.604631e-02	k: 1252	n:20000
KS ci ratio: 5.122272e-02	ci left: 2.206646e-01	ci right 2.323150e-01	k: 4529	n:20000
ELSPBP1   20000 perm   3 sec   (6002 perm/sec)   p_kst 2.264500e-01   p_cons 6.260000e-02   p_joint 9.530000e-02

Joint ci ratio: 6.217382e-02	ci left: 1.133505e-01	ci right 1.206572e-01	k: 3509	n:30000
Cons ci ratio: 8.856300e-02	ci left: 5.857883e-02	ci right 6.403984e-02	k: 1838	n:30000
KS ci ratio: 4.179946e-02	ci left: 2.219390e-01	ci right 2.314473e-01	k: 6800	n:30000
ELSPBP1   30000 perm   5 sec   (5746 perm/sec)   p_kst 2.266667e-01   p_cons 6.126667e-02   p_joint 1.169667e-01

Outputting figure to mutsig2_images.part000000000056/ELSPBP1.4_692_30000_0.22667_0.061267_0.11697.png
                gene_name: ELSPBP1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
EMILIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
KS ci ratio: 1.263071e-02	ci left: 9.001114e-01	ci right 9.116509e-01	k: 9060	n:10000
EMILIN2   10000 perm   2 sec   (5736 perm/sec)   p_kst 9.060000e-01   p_cons 4.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EMILIN2.4_3194_10000_0.906_0.4895_1.png
                gene_name: EMILIN2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
EML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
Cons ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
KS ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
EML4   10000 perm   2 sec   (6069 perm/sec)   p_kst 1.805000e-01   p_cons 2.422000e-01   p_joint 2.642000e-01

Outputting figure to mutsig2_images.part000000000056/EML4.4_3038_10000_0.1805_0.2422_0.2642.png
                gene_name: EML4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 52 percent done.
EML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
Cons ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
KS ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
EML5   10000 perm   2 sec   (5100 perm/sec)   p_kst 6.454000e-01   p_cons 3.912000e-01   p_joint 7.140000e-01

Outputting figure to mutsig2_images.part000000000056/EML5.4_6106_10000_0.6454_0.3912_0.714.png
                gene_name: EML5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 54 percent done.
EIF4E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
Cons ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
KS ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
EIF4E2   10000 perm   1 sec   (7297 perm/sec)   p_kst 7.015000e-01   p_cons 1.505000e-01   p_joint 5.105000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4E2.3_766_10000_0.7015_0.1505_0.5105.png
                gene_name: EIF4E2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 55 percent done.
ELAVL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
ELAVL1   10000 perm   1 sec   (7090 perm/sec)   p_kst 4.167000e-01   p_cons 4.564000e-01   p_joint 4.812000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL1.3_1001_10000_0.4167_0.4564_0.4812.png
                gene_name: ELAVL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 57 percent done.
ELAVL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
ELAVL4   10000 perm   1 sec   (7122 perm/sec)   p_kst 2.129000e-01   p_cons 2.823000e-01   p_joint 2.755000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL4.3_1270_10000_0.2129_0.2823_0.2755.png
                gene_name: ELAVL4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 59 percent done.
ELK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
Cons ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
KS ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
ELK3   10000 perm   1 sec   (6998 perm/sec)   p_kst 4.700000e-02   p_cons 6.390000e-01   p_joint 2.434000e-01

Joint ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
Cons ci ratio: 2.045089e-02	ci left: 6.408328e-01	ci right 6.541243e-01	k: 12950	n:20000
KS ci ratio: 1.303669e-01	ci left: 4.042395e-02	ci right 4.610980e-02	k: 864	n:20000
ELK3   20000 perm   3 sec   (6170 perm/sec)   p_kst 4.320000e-02   p_cons 6.475000e-01   p_joint 7.385000e-02

Joint ci ratio: 6.993391e-02	ci left: 9.147502e-02	ci right 9.813702e-02	k: 2843	n:30000
Cons ci ratio: 1.674956e-02	ci left: 6.406584e-01	ci right 6.515133e-01	k: 19383	n:30000
KS ci ratio: 1.077314e-01	ci left: 3.998524e-02	ci right 4.457061e-02	k: 1267	n:30000
ELK3   30000 perm   5 sec   (5856 perm/sec)   p_kst 4.223333e-02   p_cons 6.461000e-01   p_joint 9.476667e-02

Joint ci ratio: 6.492377e-02	ci left: 8.080682e-02	ci right 8.625382e-02	k: 3340	n:40000
Cons ci ratio: 1.449296e-02	ci left: 6.417921e-01	ci right 6.511866e-01	k: 25860	n:40000
KS ci ratio: 9.087449e-02	ci left: 4.242651e-02	ci right 4.648996e-02	k: 1777	n:40000
ELK3   40000 perm   7 sec   (5662 perm/sec)   p_kst 4.442500e-02   p_cons 6.465000e-01   p_joint 8.350000e-02

Outputting figure to mutsig2_images.part000000000056/ELK3.3_1240_40000_0.044425_0.6465_0.0835.png
                gene_name: ELK3
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 61 percent done.
EMCN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.474606e-03	ci left: 9.612099e-01	ci right 9.685160e-01	k: 9650	n:10000
Cons ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
KS ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
EMCN   10000 perm   1 sec   (7700 perm/sec)   p_kst 5.041000e-01   p_cons 6.007000e-01   p_joint 9.650000e-01

Outputting figure to mutsig2_images.part000000000056/EMCN.2_830_10000_0.5041_0.6007_0.965.png
                gene_name: EMCN
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 62 percent done.
EMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 1.749511e-01	ci left: 4.360497e-02	ci right 5.206094e-02	k: 477	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
EMD   10000 perm   1 sec   (7180 perm/sec)   p_kst 1.030000e-02   p_cons 4.770000e-02   p_joint 7.200000e-03

Joint ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
Cons ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
KS ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
EMD   20000 perm   3 sec   (6410 perm/sec)   p_kst 1.015000e-02   p_cons 4.120000e-02   p_joint 2.950000e-03

Joint ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
Cons ci ratio: 1.009372e-01	ci left: 4.544559e-02	ci right 5.030911e-02	k: 1435	n:30000
KS ci ratio: 2.204090e-01	ci left: 9.282959e-03	ci right 1.161331e-02	k: 312	n:30000
EMD   30000 perm   5 sec   (6076 perm/sec)   p_kst 1.040000e-02   p_cons 4.783333e-02   p_joint 2.900000e-03

Joint ci ratio: 3.173454e-01	ci left: 3.197791e-03	ci right 4.425976e-03	k: 151	n:40000
Cons ci ratio: 8.648552e-02	ci left: 4.673343e-02	ci right 5.098237e-02	k: 1953	n:40000
KS ci ratio: 1.916555e-01	ci left: 9.357548e-03	ci right 1.136449e-02	k: 413	n:40000
EMD   40000 perm   7 sec   (5867 perm/sec)   p_kst 1.032500e-02   p_cons 4.882500e-02   p_joint 3.775000e-03

Joint ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
Cons ci ratio: 7.695028e-02	ci left: 4.743823e-02	ci right 5.125431e-02	k: 2466	n:50000
KS ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
EMD   50000 perm   9 sec   (5702 perm/sec)   p_kst 1.000000e-02   p_cons 4.932000e-02   p_joint 2.860000e-03

Joint ci ratio: 2.726478e-01	ci left: 2.965586e-03	ci right 3.916778e-03	k: 205	n:60000
Cons ci ratio: 6.990368e-02	ci left: 4.805650e-02	ci right 5.155387e-02	k: 2987	n:60000
KS ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
EMD   60000 perm   11 sec   (5561 perm/sec)   p_kst 1.036667e-02   p_cons 4.978333e-02   p_joint 3.416667e-03

Joint ci ratio: 2.541981e-01	ci left: 2.955574e-03	ci right 3.829249e-03	k: 236	n:70000
Cons ci ratio: 6.473785e-02	ci left: 4.815788e-02	ci right 5.139386e-02	k: 3483	n:70000
KS ci ratio: 1.454376e-01	ci left: 9.523951e-03	ci right 1.103134e-02	k: 718	n:70000
EMD   70000 perm   13 sec   (5430 perm/sec)   p_kst 1.025714e-02   p_cons 4.975714e-02   p_joint 3.371429e-03

Joint ci ratio: 2.603843e-01	ci left: 2.457407e-03	ci right 3.204372e-03	k: 225	n:80000
Cons ci ratio: 6.050652e-02	ci left: 4.833967e-02	ci right 5.136808e-02	k: 3987	n:80000
KS ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
EMD   80000 perm   15 sec   (5313 perm/sec)   p_kst 1.002500e-02   p_cons 4.983750e-02   p_joint 2.812500e-03

Joint ci ratio: 1.845332e-01	ci left: 4.528446e-03	ci right 5.459455e-03	k: 448	n:90000
Cons ci ratio: 5.689613e-02	ci left: 4.867277e-02	ci right 5.153409e-02	k: 4508	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
EMD   90000 perm   17 sec   (5202 perm/sec)   p_kst 1.001111e-02   p_cons 5.008889e-02   p_joint 4.977778e-03

Joint ci ratio: 1.020163e-01	ci left: 1.380720e-02	ci right 1.530115e-02	k: 1454	n:100000
Cons ci ratio: 5.391981e-02	ci left: 4.884482e-02	ci right 5.156134e-02	k: 5019	n:100000
KS ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
EMD   100000 perm   20 sec   (5102 perm/sec)   p_kst 1.004000e-02   p_cons 5.019000e-02   p_joint 1.454000e-02

Joint ci ratio: 1.518953e-01	ci left: 5.560892e-03	ci right 6.483627e-03	k: 661	n:110000
Cons ci ratio: 5.144979e-02	ci left: 4.883612e-02	ci right 5.142403e-02	k: 5513	n:110000
KS ci ratio: 1.175995e-01	ci left: 9.411586e-03	ci right 1.059628e-02	k: 1099	n:110000
EMD   110000 perm   22 sec   (5004 perm/sec)   p_kst 9.990909e-03   p_cons 5.011818e-02   p_joint 6.009091e-03

Joint ci ratio: 1.447429e-01	ci left: 5.635120e-03	ci right 6.522338e-03	k: 728	n:120000
Cons ci ratio: 4.935571e-02	ci left: 4.870772e-02	ci right 5.118076e-02	k: 5992	n:120000
KS ci ratio: 1.124983e-01	ci left: 9.452843e-03	ci right 1.058769e-02	k: 1201	n:120000
EMD   120000 perm   24 sec   (4908 perm/sec)   p_kst 1.000833e-02   p_cons 4.993333e-02   p_joint 6.066667e-03

Joint ci ratio: 1.408475e-01	ci left: 5.505740e-03	ci right 6.347297e-03	k: 769	n:130000
Cons ci ratio: 4.739800e-02	ci left: 4.879864e-02	ci right 5.117533e-02	k: 6497	n:130000
KS ci ratio: 1.077996e-01	ci left: 9.526126e-03	ci right 1.061897e-02	k: 1308	n:130000
EMD   130000 perm   27 sec   (4826 perm/sec)   p_kst 1.006154e-02   p_cons 4.997692e-02   p_joint 5.915385e-03

Joint ci ratio: 1.567011e-01	ci left: 4.101206e-03	ci right 4.805275e-03	k: 622	n:140000
Cons ci ratio: 4.561847e-02	ci left: 4.895596e-02	ci right 5.124843e-02	k: 7013	n:140000
KS ci ratio: 1.038668e-01	ci left: 9.548028e-03	ci right 1.060098e-02	k: 1409	n:140000
EMD   140000 perm   29 sec   (4748 perm/sec)   p_kst 1.006429e-02   p_cons 5.009286e-02   p_joint 4.442857e-03

Joint ci ratio: 1.347925e-01	ci left: 5.228610e-03	ci right 5.990692e-03	k: 840	n:150000
Cons ci ratio: 4.401310e-02	ci left: 4.912014e-02	ci right 5.133729e-02	k: 7533	n:150000
KS ci ratio: 1.000348e-01	ci left: 9.626149e-03	ci right 1.064625e-02	k: 1519	n:150000
EMD   150000 perm   32 sec   (4669 perm/sec)   p_kst 1.012667e-02   p_cons 5.022000e-02   p_joint 5.600000e-03

Joint ci ratio: 1.306638e-01	ci left: 5.228116e-03	ci right 5.964974e-03	k: 894	n:160000
Cons ci ratio: 4.273115e-02	ci left: 4.890001e-02	ci right 5.104134e-02	k: 7994	n:160000
KS ci ratio: 9.632952e-02	ci left: 9.750034e-03	ci right 1.074283e-02	k: 1638	n:160000
EMD   160000 perm   35 sec   (4591 perm/sec)   p_kst 1.023750e-02   p_cons 4.996250e-02   p_joint 5.587500e-03

Joint ci ratio: 1.074744e-01	ci left: 7.347203e-03	ci right 8.187361e-03	k: 1319	n:170000
Cons ci ratio: 4.137766e-02	ci left: 4.910850e-02	ci right 5.118922e-02	k: 8524	n:170000
KS ci ratio: 9.556718e-02	ci left: 9.331418e-03	ci right 1.027365e-02	k: 1665	n:170000
EMD   170000 perm   38 sec   (4519 perm/sec)   p_kst 9.794118e-03   p_cons 5.014118e-02   p_joint 7.758824e-03

Joint ci ratio: 1.066866e-01	ci left: 7.047102e-03	ci right 7.846662e-03	k: 1339	n:180000
Cons ci ratio: 4.026465e-02	ci left: 4.901415e-02	ci right 5.103371e-02	k: 9003	n:180000
KS ci ratio: 9.260989e-02	ci left: 9.398903e-03	ci right 1.031699e-02	k: 1773	n:180000
EMD   180000 perm   40 sec   (4451 perm/sec)   p_kst 9.850000e-03   p_cons 5.001667e-02   p_joint 7.438889e-03

Joint ci ratio: 1.520891e-01	ci left: 3.219164e-03	ci right 3.754056e-03	k: 661	n:190000
Cons ci ratio: 3.921729e-02	ci left: 4.897733e-02	ci right 5.094169e-02	k: 9491	n:190000
KS ci ratio: 9.012906e-02	ci left: 9.413374e-03	ci right 1.030694e-02	k: 1872	n:190000
EMD   190000 perm   43 sec   (4378 perm/sec)   p_kst 9.852632e-03   p_cons 4.995263e-02   p_joint 3.478947e-03

Joint ci ratio: 1.487577e-01	ci left: 3.202558e-03	ci right 3.721997e-03	k: 691	n:200000
Cons ci ratio: 3.824964e-02	ci left: 4.893986e-02	ci right 5.085322e-02	k: 9978	n:200000
KS ci ratio: 8.788250e-02	ci left: 9.416910e-03	ci right 1.028739e-02	k: 1969	n:200000
EMD   200000 perm   46 sec   (4310 perm/sec)   p_kst 9.845000e-03   p_cons 4.989000e-02   p_joint 3.455000e-03

Joint ci ratio: 1.512007e-01	ci left: 2.949196e-03	ci right 3.436106e-03	k: 669	n:210000
Cons ci ratio: 3.734462e-02	ci left: 4.892065e-02	ci right 5.078703e-02	k: 10468	n:210000
KS ci ratio: 8.592200e-02	ci left: 9.392396e-03	ci right 1.024026e-02	k: 2060	n:210000
EMD   210000 perm   49 sec   (4243 perm/sec)   p_kst 9.809524e-03   p_cons 4.984762e-02   p_joint 3.185714e-03

Joint ci ratio: 1.484587e-01	ci left: 2.924515e-03	ci right 3.397816e-03	k: 694	n:220000
Cons ci ratio: 3.650445e-02	ci left: 4.889467e-02	ci right 5.071721e-02	k: 10956	n:220000
KS ci ratio: 8.396897e-02	ci left: 9.397012e-03	ci right 1.022507e-02	k: 2157	n:220000
EMD   220000 perm   53 sec   (4179 perm/sec)   p_kst 9.804545e-03   p_cons 4.980000e-02   p_joint 3.154545e-03

Joint ci ratio: 1.456578e-01	ci left: 2.910432e-03	ci right 3.371795e-03	k: 721	n:230000
Cons ci ratio: 3.573333e-02	ci left: 4.883259e-02	ci right 5.061357e-02	k: 11435	n:230000
KS ci ratio: 8.194174e-02	ci left: 9.448281e-03	ci right 1.025980e-02	k: 2265	n:230000
EMD   230000 perm   56 sec   (4120 perm/sec)   p_kst 9.847826e-03   p_cons 4.971739e-02   p_joint 3.134783e-03

Joint ci ratio: 1.428186e-01	ci left: 2.905636e-03	ci right 3.356495e-03	k: 750	n:240000
Cons ci ratio: 3.498131e-02	ci left: 4.885042e-02	ci right 5.059380e-02	k: 11932	n:240000
KS ci ratio: 8.041457e-02	ci left: 9.409736e-03	ci right 1.020217e-02	k: 2352	n:240000
EMD   240000 perm   59 sec   (4063 perm/sec)   p_kst 9.800000e-03   p_cons 4.971667e-02   p_joint 3.125000e-03

Joint ci ratio: 1.397800e-01	ci left: 2.916746e-03	ci right 3.358898e-03	k: 783	n:250000
Cons ci ratio: 3.432136e-02	ci left: 4.874024e-02	ci right 5.044622e-02	k: 12397	n:250000
KS ci ratio: 7.882304e-02	ci left: 9.409700e-03	ci right 1.018573e-02	k: 2448	n:250000
EMD   250000 perm   62 sec   (4007 perm/sec)   p_kst 9.792000e-03   p_cons 4.958800e-02   p_joint 3.132000e-03

Joint ci ratio: 1.360121e-01	ci left: 2.967961e-03	ci right 3.404768e-03	k: 827	n:260000
Cons ci ratio: 3.363144e-02	ci left: 4.882196e-02	ci right 5.049579e-02	k: 12910	n:260000
KS ci ratio: 7.695679e-02	ci left: 9.500354e-03	ci right 1.026448e-02	k: 2568	n:260000
EMD   260000 perm   66 sec   (3952 perm/sec)   p_kst 9.876923e-03   p_cons 4.965385e-02   p_joint 3.180769e-03

Joint ci ratio: 1.336135e-01	ci left: 2.965400e-03	ci right 3.393522e-03	k: 857	n:270000
Cons ci ratio: 3.298927e-02	ci left: 4.887590e-02	ci right 5.051897e-02	k: 13417	n:270000
KS ci ratio: 7.565881e-02	ci left: 9.471823e-03	ci right 1.022024e-02	k: 2657	n:270000
EMD   270000 perm   69 sec   (3897 perm/sec)   p_kst 9.840741e-03   p_cons 4.969259e-02   p_joint 3.174074e-03

Joint ci ratio: 1.352921e-01	ci left: 2.786998e-03	ci right 3.194825e-03	k: 836	n:280000
Cons ci ratio: 3.240826e-02	ci left: 4.885184e-02	ci right 5.046464e-02	k: 13903	n:280000
KS ci ratio: 7.431515e-02	ci left: 9.473477e-03	ci right 1.020815e-02	k: 2754	n:280000
EMD   280000 perm   73 sec   (3844 perm/sec)   p_kst 9.835714e-03   p_cons 4.965357e-02   p_joint 2.985714e-03

Joint ci ratio: 1.325480e-01	ci left: 2.807543e-03	ci right 3.209387e-03	k: 871	n:290000
Cons ci ratio: 3.182085e-02	ci left: 4.893577e-02	ci right 5.052152e-02	k: 14420	n:290000
KS ci ratio: 7.295026e-02	ci left: 9.498827e-03	ci right 1.022136e-02	k: 2858	n:290000
EMD   290000 perm   76 sec   (3792 perm/sec)   p_kst 9.855172e-03   p_cons 4.972414e-02   p_joint 3.003448e-03

Joint ci ratio: 1.298925e-01	ci left: 2.830022e-03	ci right 3.226342e-03	k: 907	n:300000
Cons ci ratio: 3.129073e-02	ci left: 4.893494e-02	ci right 5.049377e-02	k: 14913	n:300000
KS ci ratio: 7.160912e-02	ci left: 9.535698e-03	ci right 1.024715e-02	k: 2966	n:300000
EMD   300000 perm   80 sec   (3741 perm/sec)   p_kst 9.886667e-03   p_cons 4.971000e-02   p_joint 3.023333e-03

Joint ci ratio: 1.282795e-01	ci left: 2.810526e-03	ci right 3.198857e-03	k: 930	n:310000
Cons ci ratio: 3.077469e-02	ci left: 4.896960e-02	ci right 5.050335e-02	k: 15417	n:310000
KS ci ratio: 7.042031e-02	ci left: 9.548118e-03	ci right 1.024819e-02	k: 3067	n:310000
EMD   310000 perm   84 sec   (3690 perm/sec)   p_kst 9.893548e-03   p_cons 4.973226e-02   p_joint 3.000000e-03

Joint ci ratio: 1.252201e-01	ci left: 2.861895e-03	ci right 3.247192e-03	k: 976	n:320000
Cons ci ratio: 3.025339e-02	ci left: 4.909536e-02	ci right 5.060655e-02	k: 15951	n:320000
KS ci ratio: 6.920065e-02	ci left: 9.584424e-03	ci right 1.027449e-02	k: 3176	n:320000
EMD   320000 perm   88 sec   (3639 perm/sec)   p_kst 9.925000e-03   p_cons 4.984687e-02   p_joint 3.050000e-03

Joint ci ratio: 1.228524e-01	ci left: 2.886751e-03	ci right 3.267512e-03	k: 1014	n:330000
Cons ci ratio: 2.980244e-02	ci left: 4.907229e-02	ci right 5.055987e-02	k: 16438	n:330000
KS ci ratio: 6.807362e-02	ci left: 9.609690e-03	ci right 1.028987e-02	k: 3282	n:330000
EMD   330000 perm   92 sec   (3592 perm/sec)   p_kst 9.945455e-03   p_cons 4.981212e-02   p_joint 3.072727e-03

Joint ci ratio: 1.213093e-01	ci left: 2.875981e-03	ci right 3.250215e-03	k: 1040	n:340000
Cons ci ratio: 2.936013e-02	ci left: 4.908578e-02	ci right 5.055132e-02	k: 16937	n:340000
KS ci ratio: 6.689037e-02	ci left: 9.665372e-03	ci right 1.033714e-02	k: 3399	n:340000
EMD   340000 perm   96 sec   (3548 perm/sec)   p_kst 9.997059e-03   p_cons 4.981471e-02   p_joint 3.058824e-03

Joint ci ratio: 1.198794e-01	ci left: 2.863083e-03	ci right 3.230935e-03	k: 1065	n:350000
Cons ci ratio: 2.892646e-02	ci left: 4.913271e-02	ci right 5.057761e-02	k: 17448	n:350000
KS ci ratio: 6.595643e-02	ci left: 9.661757e-03	ci right 1.032354e-02	k: 3496	n:350000
EMD   350000 perm   100 sec   (3504 perm/sec)   p_kst 9.988571e-03   p_cons 4.985143e-02   p_joint 3.042857e-03

Joint ci ratio: 1.189370e-01	ci left: 2.829362e-03	ci right 3.189823e-03	k: 1082	n:360000
Cons ci ratio: 2.852735e-02	ci left: 4.912475e-02	ci right 5.054917e-02	k: 17940	n:360000
KS ci ratio: 6.508799e-02	ci left: 9.650206e-03	ci right 1.030216e-02	k: 3590	n:360000
EMD   360000 perm   104 sec   (3463 perm/sec)   p_kst 9.972222e-03   p_cons 4.983333e-02   p_joint 3.005556e-03

Joint ci ratio: 1.171649e-01	ci left: 2.839449e-03	ci right 3.195432e-03	k: 1115	n:370000
Cons ci ratio: 2.811463e-02	ci left: 4.921670e-02	ci right 5.062280e-02	k: 18469	n:370000
KS ci ratio: 6.412129e-02	ci left: 9.679230e-03	ci right 1.032307e-02	k: 3699	n:370000
EMD   370000 perm   108 sec   (3422 perm/sec)   p_kst 9.997297e-03   p_cons 4.991622e-02   p_joint 3.013514e-03

Joint ci ratio: 1.159259e-01	ci left: 2.826042e-03	ci right 3.176341e-03	k: 1139	n:380000
Cons ci ratio: 2.773315e-02	ci left: 4.925688e-02	ci right 5.064473e-02	k: 18980	n:380000
KS ci ratio: 6.331405e-02	ci left: 9.670528e-03	ci right 1.030540e-02	k: 3794	n:380000
EMD   380000 perm   112 sec   (3383 perm/sec)   p_kst 9.984211e-03   p_cons 4.994737e-02   p_joint 2.997368e-03

Joint ci ratio: 1.141856e-01	ci left: 2.840742e-03	ci right 3.187221e-03	k: 1174	n:390000
Cons ci ratio: 2.738898e-02	ci left: 4.921870e-02	ci right 5.058800e-02	k: 19461	n:390000
KS ci ratio: 6.256905e-02	ci left: 9.652224e-03	ci right 1.027817e-02	k: 3885	n:390000
EMD   390000 perm   117 sec   (3344 perm/sec)   p_kst 9.961538e-03   p_cons 4.990000e-02   p_joint 3.010256e-03

Joint ci ratio: 1.129435e-01	ci left: 2.832876e-03	ci right 3.174386e-03	k: 1200	n:400000
Cons ci ratio: 2.703877e-02	ci left: 4.924712e-02	ci right 5.059941e-02	k: 19968	n:400000
KS ci ratio: 6.176353e-02	ci left: 9.661956e-03	ci right 1.028017e-02	k: 3987	n:400000
EMD   400000 perm   121 sec   (3305 perm/sec)   p_kst 9.967500e-03   p_cons 4.992000e-02   p_joint 3.000000e-03

Joint ci ratio: 1.112419e-01	ci left: 2.851497e-03	ci right 3.189734e-03	k: 1237	n:410000
Cons ci ratio: 2.669823e-02	ci left: 4.928637e-02	ci right 5.062244e-02	k: 20480	n:410000
KS ci ratio: 6.095824e-02	ci left: 9.680871e-03	ci right 1.029194e-02	k: 4093	n:410000
EMD   410000 perm   125 sec   (3268 perm/sec)   p_kst 9.982927e-03   p_cons 4.995122e-02   p_joint 3.017073e-03

Joint ci ratio: 1.096582e-01	ci left: 2.866952e-03	ci right 3.201867e-03	k: 1273	n:420000
Cons ci ratio: 2.637685e-02	ci left: 4.930020e-02	ci right 5.062031e-02	k: 20982	n:420000
KS ci ratio: 6.008978e-02	ci left: 9.729426e-03	ci right 1.033450e-02	k: 4212	n:420000
EMD   420000 perm   130 sec   (3233 perm/sec)   p_kst 1.002857e-02   p_cons 4.995714e-02   p_joint 3.030952e-03

Joint ci ratio: 1.060885e-01	ci left: 2.997157e-03	ci right 3.335174e-03	k: 1360	n:430000
Cons ci ratio: 2.605531e-02	ci left: 4.935507e-02	ci right 5.066030e-02	k: 21502	n:430000
KS ci ratio: 5.945878e-02	ci left: 9.709332e-03	ci right 1.030660e-02	k: 4302	n:430000
EMD   430000 perm   134 sec   (3198 perm/sec)   p_kst 1.000465e-02   p_cons 5.000465e-02   p_joint 3.162791e-03

Joint ci ratio: 1.049763e-01	ci left: 2.993208e-03	ci right 3.327024e-03	k: 1389	n:440000
Cons ci ratio: 2.575696e-02	ci left: 4.936463e-02	ci right 5.065494e-02	k: 22003	n:440000
KS ci ratio: 5.882019e-02	ci left: 9.699140e-03	ci right 1.028916e-02	k: 4396	n:440000
EMD   440000 perm   139 sec   (3163 perm/sec)   p_kst 9.990909e-03   p_cons 5.000682e-02   p_joint 3.156818e-03

Joint ci ratio: 1.014530e-01	ci left: 3.138862e-03	ci right 3.476472e-03	k: 1487	n:450000
Cons ci ratio: 2.546802e-02	ci left: 4.937605e-02	ci right 5.065197e-02	k: 22505	n:450000
KS ci ratio: 5.799342e-02	ci left: 9.759523e-03	ci right 1.034459e-02	k: 4522	n:450000
EMD   450000 perm   144 sec   (3129 perm/sec)   p_kst 1.004889e-02   p_cons 5.001111e-02   p_joint 3.304444e-03

Joint ci ratio: 1.004458e-01	ci left: 3.134196e-03	ci right 3.467761e-03	k: 1517	n:460000
Cons ci ratio: 2.520417e-02	ci left: 4.932871e-02	ci right 5.059001e-02	k: 22980	n:460000
KS ci ratio: 5.740043e-02	ci left: 9.748758e-03	ci right 1.032700e-02	k: 4616	n:460000
EMD   460000 perm   149 sec   (3095 perm/sec)   p_kst 1.003478e-02   p_cons 4.995652e-02   p_joint 3.297826e-03

Joint ci ratio: 9.959727e-02	ci left: 3.121445e-03	ci right 3.450682e-03	k: 1543	n:470000
Cons ci ratio: 2.493381e-02	ci left: 4.933844e-02	ci right 5.058626e-02	k: 23481	n:470000
KS ci ratio: 5.682527e-02	ci left: 9.738480e-03	ci right 1.031014e-02	k: 4710	n:470000
EMD   470000 perm   153 sec   (3063 perm/sec)   p_kst 1.002128e-02   p_cons 4.995957e-02   p_joint 3.282979e-03

Outputting figure to mutsig2_images.part000000000056/EMD.3_789_470000_0.010021_0.04996_0.003283.png
                gene_name: EMD
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0035 

Current progress: 64 percent done.
EML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
KS ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
EML3   10000 perm   2 sec   (6381 perm/sec)   p_kst 6.400000e-03   p_cons 2.770000e-02   p_joint 7.200000e-03

Joint ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
Cons ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
KS ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
EML3   20000 perm   4 sec   (5690 perm/sec)   p_kst 6.500000e-03   p_cons 2.385000e-02   p_joint 2.200000e-03

Joint ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
Cons ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
KS ci ratio: 2.702015e-01	ci left: 6.025704e-03	ci right 7.938315e-03	k: 208	n:30000
EML3   30000 perm   6 sec   (5422 perm/sec)   p_kst 6.933333e-03   p_cons 2.240000e-02   p_joint 1.933333e-03

Joint ci ratio: 5.188401e-01	ci left: 1.057713e-03	ci right 1.817636e-03	k: 56	n:40000
Cons ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
KS ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
EML3   40000 perm   8 sec   (5258 perm/sec)   p_kst 6.650000e-03   p_cons 2.207500e-02   p_joint 1.400000e-03

Joint ci ratio: 5.381626e-01	ci left: 7.768163e-04	ci right 1.363601e-03	k: 52	n:50000
Cons ci ratio: 1.174860e-01	ci left: 2.049898e-02	ci right 2.307695e-02	k: 1088	n:50000
KS ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
EML3   50000 perm   10 sec   (5124 perm/sec)   p_kst 6.160000e-03   p_cons 2.176000e-02   p_joint 1.040000e-03

Joint ci ratio: 8.991598e-01	ci left: 1.778084e-04	ci right 4.740881e-04	k: 18	n:60000
Cons ci ratio: 1.070323e-01	ci left: 2.069507e-02	ci right 2.305150e-02	k: 1311	n:60000
KS ci ratio: 2.028844e-01	ci left: 5.555911e-03	ci right 6.825899e-03	k: 370	n:60000
EML3   60000 perm   12 sec   (5009 perm/sec)   p_kst 6.166667e-03   p_cons 2.185000e-02   p_joint 3.000000e-04

Joint ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
Cons ci ratio: 9.951451e-02	ci left: 2.060549e-02	ci right 2.277727e-02	k: 1517	n:70000
KS ci ratio: 1.768292e-01	ci left: 6.354766e-03	ci right 7.600915e-03	k: 487	n:70000
EML3   70000 perm   14 sec   (4895 perm/sec)   p_kst 6.957143e-03   p_cons 2.167143e-02   p_joint 2.200000e-03

Joint ci ratio: 2.639211e-01	ci left: 2.387324e-03	ci right 3.124472e-03	k: 219	n:80000
Cons ci ratio: 9.346966e-02	ci left: 2.050605e-02	ci right 2.252886e-02	k: 1720	n:80000
KS ci ratio: 1.662686e-01	ci left: 6.326087e-03	ci right 7.485106e-03	k: 551	n:80000
EML3   80000 perm   17 sec   (4806 perm/sec)   p_kst 6.887500e-03   p_cons 2.150000e-02   p_joint 2.737500e-03

Joint ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
Cons ci ratio: 8.843092e-02	ci left: 2.042097e-02	ci right 2.232117e-02	k: 1922	n:90000
KS ci ratio: 1.580461e-01	ci left: 6.252132e-03	ci right 7.335579e-03	k: 610	n:90000
EML3   90000 perm   19 sec   (4711 perm/sec)   p_kst 6.777778e-03   p_cons 2.135556e-02   p_joint 1.744444e-03

Joint ci ratio: 3.077332e-01	ci left: 1.371068e-03	ci right 1.878542e-03	k: 161	n:100000
Cons ci ratio: 8.398674e-02	ci left: 2.042382e-02	ci right 2.222409e-02	k: 2131	n:100000
KS ci ratio: 1.534916e-01	ci left: 5.982433e-03	ci right 6.986515e-03	k: 647	n:100000
EML3   100000 perm   22 sec   (4625 perm/sec)   p_kst 6.470000e-03   p_cons 2.131000e-02   p_joint 1.610000e-03

Joint ci ratio: 1.953974e-01	ci left: 3.289251e-03	ci right 4.010036e-03	k: 400	n:110000
Cons ci ratio: 8.020414e-02	ci left: 2.040139e-02	ci right 2.211489e-02	k: 2337	n:110000
KS ci ratio: 1.451039e-01	ci left: 6.112470e-03	ci right 7.077458e-03	k: 724	n:110000
EML3   110000 perm   24 sec   (4545 perm/sec)   p_kst 6.581818e-03   p_cons 2.124545e-02   p_joint 3.636364e-03

Joint ci ratio: 1.462646e-01	ci left: 5.514646e-03	ci right 6.392821e-03	k: 713	n:120000
Cons ci ratio: 7.693687e-02	ci left: 2.035969e-02	ci right 2.199690e-02	k: 2540	n:120000
KS ci ratio: 1.391844e-01	ci left: 6.109430e-03	ci right 7.031326e-03	k: 787	n:120000
EML3   120000 perm   27 sec   (4471 perm/sec)   p_kst 6.558333e-03   p_cons 2.116667e-02   p_joint 5.941667e-03

Joint ci ratio: 1.688101e-01	ci left: 3.782002e-03	ci right 4.486554e-03	k: 536	n:130000
Cons ci ratio: 7.405267e-02	ci left: 2.031805e-02	ci right 2.188803e-02	k: 2742	n:130000
KS ci ratio: 1.329167e-01	ci left: 6.204217e-03	ci right 7.094927e-03	k: 863	n:130000
EML3   130000 perm   30 sec   (4398 perm/sec)   p_kst 6.638462e-03   p_cons 2.109231e-02   p_joint 4.123077e-03

Joint ci ratio: 1.657644e-01	ci left: 3.648713e-03	ci right 4.314946e-03	k: 556	n:140000
Cons ci ratio: 7.153231e-02	ci left: 2.024827e-02	ci right 2.175738e-02	k: 2939	n:140000
KS ci ratio: 1.282527e-01	ci left: 6.203269e-03	ci right 7.060214e-03	k: 927	n:140000
EML3   140000 perm   32 sec   (4323 perm/sec)   p_kst 6.621429e-03   p_cons 2.099286e-02   p_joint 3.971429e-03

Joint ci ratio: 1.602496e-01	ci left: 3.654862e-03	ci right 4.297878e-03	k: 595	n:150000
Cons ci ratio: 6.902849e-02	ci left: 2.031965e-02	ci right 2.177895e-02	k: 3156	n:150000
KS ci ratio: 1.240475e-01	ci left: 6.202921e-03	ci right 7.029657e-03	k: 991	n:150000
EML3   150000 perm   35 sec   (4255 perm/sec)   p_kst 6.606667e-03   p_cons 2.104000e-02   p_joint 3.966667e-03

Joint ci ratio: 1.554970e-01	ci left: 3.648547e-03	ci right 4.269640e-03	k: 632	n:160000
Cons ci ratio: 6.681090e-02	ci left: 2.035832e-02	ci right 2.177161e-02	k: 3369	n:160000
KS ci ratio: 1.194924e-01	ci left: 6.281847e-03	ci right 7.086185e-03	k: 1068	n:160000
EML3   160000 perm   38 sec   (4191 perm/sec)   p_kst 6.675000e-03   p_cons 2.105625e-02   p_joint 3.950000e-03

Joint ci ratio: 1.520577e-01	ci left: 3.597944e-03	ci right 4.195641e-03	k: 661	n:170000
Cons ci ratio: 6.485890e-02	ci left: 2.035259e-02	ci right 2.172264e-02	k: 3575	n:170000
KS ci ratio: 1.156081e-01	ci left: 6.329123e-03	ci right 7.111372e-03	k: 1141	n:170000
EML3   170000 perm   41 sec   (4126 perm/sec)   p_kst 6.711765e-03   p_cons 2.102941e-02   p_joint 3.888235e-03

Joint ci ratio: 1.525375e-01	ci left: 3.376653e-03	ci right 3.939519e-03	k: 657	n:180000
Cons ci ratio: 6.289891e-02	ci left: 2.045742e-02	ci right 2.179140e-02	k: 3801	n:180000
KS ci ratio: 1.117098e-01	ci left: 6.414729e-03	ci right 7.179064e-03	k: 1222	n:180000
EML3   180000 perm   44 sec   (4066 perm/sec)   p_kst 6.788889e-03   p_cons 2.111667e-02   p_joint 3.650000e-03

Joint ci ratio: 1.805919e-01	ci left: 2.250288e-03	ci right 2.701947e-03	k: 469	n:190000
Cons ci ratio: 6.135593e-02	ci left: 2.038588e-02	ci right 2.168142e-02	k: 3995	n:190000
KS ci ratio: 1.089406e-01	ci left: 6.399538e-03	ci right 7.141947e-03	k: 1285	n:190000
EML3   190000 perm   47 sec   (4007 perm/sec)   p_kst 6.763158e-03   p_cons 2.102632e-02   p_joint 2.468421e-03

Joint ci ratio: 1.811836e-01	ci left: 2.123440e-03	ci right 2.551188e-03	k: 466	n:200000
Cons ci ratio: 5.968158e-02	ci left: 2.048444e-02	ci right 2.174949e-02	k: 4222	n:200000
KS ci ratio: 1.058944e-01	ci left: 6.444494e-03	ci right 7.169911e-03	k: 1360	n:200000
EML3   200000 perm   51 sec   (3952 perm/sec)   p_kst 6.800000e-03   p_cons 2.111000e-02   p_joint 2.330000e-03

Joint ci ratio: 1.825702e-01	ci left: 1.990496e-03	ci right 2.394871e-03	k: 459	n:210000
Cons ci ratio: 5.830475e-02	ci left: 2.045670e-02	ci right 2.168990e-02	k: 4424	n:210000
KS ci ratio: 1.034171e-01	ci left: 6.443673e-03	ci right 7.150997e-03	k: 1426	n:210000
EML3   210000 perm   54 sec   (3898 perm/sec)   p_kst 6.790476e-03   p_cons 2.106667e-02   p_joint 2.185714e-03

Joint ci ratio: 1.913216e-01	ci left: 1.722349e-03	ci right 2.090973e-03	k: 418	n:220000
Cons ci ratio: 5.689979e-02	ci left: 2.051694e-02	ci right 2.172299e-02	k: 4645	n:220000
KS ci ratio: 1.009020e-01	ci left: 6.469693e-03	ci right 7.161578e-03	k: 1498	n:220000
EML3   220000 perm   57 sec   (3844 perm/sec)   p_kst 6.809091e-03   p_cons 2.111364e-02   p_joint 1.900000e-03

Joint ci ratio: 1.864872e-01	ci left: 1.738594e-03	ci right 2.100229e-03	k: 440	n:230000
Cons ci ratio: 5.559756e-02	ci left: 2.056798e-02	ci right 2.174848e-02	k: 4865	n:230000
KS ci ratio: 9.903901e-02	ci left: 6.430025e-03	ci right 7.104234e-03	k: 1555	n:230000
EML3   230000 perm   61 sec   (3789 perm/sec)   p_kst 6.760870e-03   p_cons 2.115217e-02   p_joint 1.913043e-03

Joint ci ratio: 2.250554e-01	ci left: 1.120476e-03	ci right 1.408452e-03	k: 302	n:240000
Cons ci ratio: 5.038087e-02	ci left: 2.398393e-02	ci right 2.522758e-02	k: 5904	n:240000
KS ci ratio: 9.661441e-02	ci left: 6.483230e-03	ci right 7.145432e-03	k: 1634	n:240000
EML3   240000 perm   64 sec   (3736 perm/sec)   p_kst 6.808333e-03   p_cons 2.460000e-02   p_joint 1.258333e-03

Joint ci ratio: 2.214323e-01	ci left: 1.113420e-03	ci right 1.394348e-03	k: 312	n:250000
Cons ci ratio: 4.937550e-02	ci left: 2.398445e-02	ci right 2.520260e-02	k: 6147	n:250000
KS ci ratio: 9.483426e-02	ci left: 6.465960e-03	ci right 7.113554e-03	k: 1696	n:250000
EML3   250000 perm   68 sec   (3685 perm/sec)   p_kst 6.784000e-03   p_cons 2.458800e-02   p_joint 1.248000e-03

Joint ci ratio: 2.193428e-01	ci left: 1.092398e-03	ci right 1.365070e-03	k: 318	n:260000
Cons ci ratio: 4.853711e-02	ci left: 2.387874e-02	ci right 2.507035e-02	k: 6362	n:260000
KS ci ratio: 9.259414e-02	ci left: 6.529028e-03	ci right 7.166655e-03	k: 1779	n:260000
EML3   260000 perm   71 sec   (3637 perm/sec)   p_kst 6.842308e-03   p_cons 2.446923e-02   p_joint 1.223077e-03

Joint ci ratio: 2.137200e-01	ci left: 1.111489e-03	ci right 1.380882e-03	k: 335	n:270000
Cons ci ratio: 4.762511e-02	ci left: 2.389450e-02	ci right 2.506388e-02	k: 6608	n:270000
KS ci ratio: 9.082521e-02	ci left: 6.540527e-03	ci right 7.166425e-03	k: 1849	n:270000
EML3   270000 perm   75 sec   (3593 perm/sec)   p_kst 6.848148e-03   p_cons 2.447407e-02   p_joint 1.240741e-03

Joint ci ratio: 2.112220e-01	ci left: 1.098843e-03	ci right 1.361655e-03	k: 343	n:280000
Cons ci ratio: 4.672425e-02	ci left: 2.394817e-02	ci right 2.509741e-02	k: 6865	n:280000
KS ci ratio: 8.945940e-02	ci left: 6.505914e-03	ci right 7.118647e-03	k: 1906	n:280000
EML3   280000 perm   79 sec   (3549 perm/sec)   p_kst 6.807143e-03   p_cons 2.451786e-02   p_joint 1.225000e-03

Joint ci ratio: 2.103103e-01	ci left: 1.070749e-03	ci right 1.325594e-03	k: 346	n:290000
Cons ci ratio: 4.575752e-02	ci left: 2.411768e-02	ci right 2.525047e-02	k: 7157	n:290000
KS ci ratio: 8.783872e-02	ci left: 6.520974e-03	ci right 7.123428e-03	k: 1977	n:290000
EML3   290000 perm   83 sec   (3505 perm/sec)   p_kst 6.817241e-03   p_cons 2.467931e-02   p_joint 1.193103e-03

Joint ci ratio: 2.193608e-01	ci left: 9.467368e-04	ci right 1.183072e-03	k: 318	n:300000
Cons ci ratio: 4.500348e-02	ci left: 2.411126e-02	ci right 2.522461e-02	k: 7399	n:300000
KS ci ratio: 8.630306e-02	ci left: 6.535123e-03	ci right 7.127797e-03	k: 2048	n:300000
EML3   300000 perm   87 sec   (3463 perm/sec)   p_kst 6.826667e-03   p_cons 2.466333e-02   p_joint 1.060000e-03

Joint ci ratio: 2.221709e-01	ci left: 8.918145e-04	ci right 1.117681e-03	k: 310	n:310000
Cons ci ratio: 4.433909e-02	ci left: 2.404797e-02	ci right 2.514158e-02	k: 7623	n:310000
KS ci ratio: 8.488554e-02	ci left: 6.542130e-03	ci right 7.125211e-03	k: 2117	n:310000
EML3   310000 perm   91 sec   (3420 perm/sec)   p_kst 6.829032e-03   p_cons 2.459032e-02   p_joint 1.000000e-03

Joint ci ratio: 1.909231e-01	ci left: 1.190034e-03	ci right 1.444135e-03	k: 420	n:320000
Cons ci ratio: 4.366906e-02	ci left: 2.402585e-02	ci right 2.510153e-02	k: 7859	n:320000
KS ci ratio: 8.357413e-02	ci left: 6.542653e-03	ci right 7.116333e-03	k: 2184	n:320000
EML3   320000 perm   95 sec   (3379 perm/sec)   p_kst 6.825000e-03   p_cons 2.455938e-02   p_joint 1.312500e-03

Joint ci ratio: 1.956362e-01	ci left: 1.096293e-03	ci right 1.336846e-03	k: 400	n:330000
Cons ci ratio: 4.291995e-02	ci left: 2.412513e-02	ci right 2.518627e-02	k: 8135	n:330000
KS ci ratio: 8.217486e-02	ci left: 6.566957e-03	ci right 7.132665e-03	k: 2259	n:330000
EML3   330000 perm   99 sec   (3340 perm/sec)   p_kst 6.845455e-03   p_cons 2.465152e-02   p_joint 1.212121e-03

Joint ci ratio: 1.932422e-01	ci left: 1.092029e-03	ci right 1.328369e-03	k: 410	n:340000
Cons ci ratio: 4.235287e-02	ci left: 2.405571e-02	ci right 2.509947e-02	k: 8355	n:340000
KS ci ratio: 8.108872e-02	ci left: 6.549558e-03	ci right 7.105957e-03	k: 2320	n:340000
EML3   340000 perm   103 sec   (3302 perm/sec)   p_kst 6.823529e-03   p_cons 2.457353e-02   p_joint 1.205882e-03

Joint ci ratio: 1.907073e-01	ci left: 1.090746e-03	ci right 1.323353e-03	k: 421	n:350000
Cons ci ratio: 4.177773e-02	ci left: 2.402428e-02	ci right 2.505218e-02	k: 8587	n:350000
KS ci ratio: 7.975847e-02	ci left: 6.580807e-03	ci right 7.130263e-03	k: 2398	n:350000
EML3   350000 perm   107 sec   (3265 perm/sec)   p_kst 6.851429e-03   p_cons 2.453429e-02   p_joint 1.202857e-03

Joint ci ratio: 1.887064e-01	ci left: 1.084260e-03	ci right 1.312780e-03	k: 430	n:360000
Cons ci ratio: 4.117995e-02	ci left: 2.404694e-02	ci right 2.506074e-02	k: 8838	n:360000
KS ci ratio: 7.881262e-02	ci left: 6.555920e-03	ci right 7.096509e-03	k: 2456	n:360000
EML3   360000 perm   112 sec   (3226 perm/sec)   p_kst 6.822222e-03   p_cons 2.455000e-02   p_joint 1.194444e-03

Joint ci ratio: 1.451417e-01	ci left: 1.824739e-03	ci right 2.112880e-03	k: 727	n:370000
Cons ci ratio: 4.064151e-02	ci left: 2.402833e-02	ci right 2.502779e-02	k: 9074	n:370000
KS ci ratio: 7.754343e-02	ci left: 6.593377e-03	ci right 7.127904e-03	k: 2537	n:370000
EML3   370000 perm   116 sec   (3188 perm/sec)   p_kst 6.856757e-03   p_cons 2.452432e-02   p_joint 1.964865e-03

Joint ci ratio: 1.434766e-01	ci left: 1.819841e-03	ci right 2.103629e-03	k: 744	n:380000
Cons ci ratio: 4.011261e-02	ci left: 2.402381e-02	ci right 2.500978e-02	k: 9315	n:380000
KS ci ratio: 7.621651e-02	ci left: 6.649582e-03	ci right 7.179032e-03	k: 2626	n:380000
EML3   380000 perm   121 sec   (3152 perm/sec)   p_kst 6.910526e-03   p_cons 2.451316e-02   p_joint 1.957895e-03

Joint ci ratio: 1.417745e-01	ci left: 1.817685e-03	ci right 2.097490e-03	k: 762	n:390000
Cons ci ratio: 3.957413e-02	ci left: 2.405515e-02	ci right 2.502885e-02	k: 9570	n:390000
KS ci ratio: 7.531933e-02	ci left: 6.637556e-03	ci right 7.159554e-03	k: 2689	n:390000
EML3   390000 perm   125 sec   (3115 perm/sec)   p_kst 6.894872e-03   p_cons 2.453846e-02   p_joint 1.953846e-03

Joint ci ratio: 1.533937e-01	ci left: 1.504955e-03	ci right 1.757352e-03	k: 651	n:400000
Cons ci ratio: 3.908737e-02	ci left: 2.404787e-02	ci right 2.500903e-02	k: 9810	n:400000
KS ci ratio: 7.441228e-02	ci left: 6.633527e-03	ci right 7.148655e-03	k: 2755	n:400000
EML3   400000 perm   130 sec   (3082 perm/sec)   p_kst 6.887500e-03   p_cons 2.452500e-02   p_joint 1.627500e-03

Joint ci ratio: 1.700031e-01	ci left: 1.185020e-03	ci right 1.407490e-03	k: 530	n:410000
Cons ci ratio: 3.860239e-02	ci left: 2.406034e-02	ci right 2.500981e-02	k: 10058	n:410000
KS ci ratio: 7.604678e-02	ci left: 6.194076e-03	ci right 6.686109e-03	k: 2639	n:410000
EML3   410000 perm   134 sec   (3050 perm/sec)   p_kst 6.436585e-03   p_cons 2.453171e-02   p_joint 1.292683e-03

Joint ci ratio: 1.681143e-01	ci left: 1.184168e-03	ci right 1.403757e-03	k: 542	n:420000
Cons ci ratio: 3.817491e-02	ci left: 2.402276e-02	ci right 2.496001e-02	k: 10285	n:420000
KS ci ratio: 7.518346e-02	ci left: 6.189089e-03	ci right 6.674901e-03	k: 2700	n:420000
EML3   420000 perm   139 sec   (3018 perm/sec)   p_kst 6.428571e-03   p_cons 2.448810e-02   p_joint 1.290476e-03

Joint ci ratio: 1.661373e-01	ci left: 1.185597e-03	ci right 1.402608e-03	k: 555	n:430000
Cons ci ratio: 3.774110e-02	ci left: 2.401232e-02	ci right 2.493829e-02	k: 10523	n:430000
KS ci ratio: 7.436243e-02	ci left: 6.182082e-03	ci right 6.661815e-03	k: 2760	n:430000
EML3   430000 perm   144 sec   (2988 perm/sec)   p_kst 6.418605e-03   p_cons 2.447209e-02   p_joint 1.290698e-03

Joint ci ratio: 1.552034e-01	ci left: 1.335357e-03	ci right 1.562198e-03	k: 636	n:440000
Cons ci ratio: 3.731463e-02	ci left: 2.401142e-02	ci right 2.492667e-02	k: 10765	n:440000
KS ci ratio: 7.368612e-02	ci left: 6.155340e-03	ci right 6.628468e-03	k: 2811	n:440000
EML3   440000 perm   149 sec   (2957 perm/sec)   p_kst 6.388636e-03   p_cons 2.446591e-02   p_joint 1.445455e-03

Joint ci ratio: 1.556962e-01	ci left: 1.297137e-03	ci right 1.518251e-03	k: 632	n:450000
Cons ci ratio: 3.691777e-02	ci left: 2.399080e-02	ci right 2.489533e-02	k: 10998	n:450000
KS ci ratio: 7.281069e-02	ci left: 6.166899e-03	ci right 6.635046e-03	k: 2879	n:450000
EML3   450000 perm   154 sec   (2928 perm/sec)   p_kst 6.397778e-03   p_cons 2.444000e-02   p_joint 1.404444e-03

Joint ci ratio: 1.538835e-01	ci left: 1.300285e-03	ci right 1.519116e-03	k: 647	n:460000
Cons ci ratio: 3.650834e-02	ci left: 2.400345e-02	ci right 2.489821e-02	k: 11246	n:460000
KS ci ratio: 7.203955e-02	ci left: 6.165178e-03	ci right 6.628029e-03	k: 2941	n:460000
EML3   460000 perm   159 sec   (2898 perm/sec)   p_kst 6.393478e-03   p_cons 2.444783e-02   p_joint 1.406522e-03

Joint ci ratio: 1.523629e-01	ci left: 1.299219e-03	ci right 1.515513e-03	k: 660	n:470000
Cons ci ratio: 3.611223e-02	ci left: 2.401561e-02	ci right 2.490091e-02	k: 11494	n:470000
KS ci ratio: 7.126854e-02	ci left: 6.167734e-03	ci right 6.625617e-03	k: 3005	n:470000
EML3   470000 perm   164 sec   (2868 perm/sec)   p_kst 6.393617e-03   p_cons 2.445532e-02   p_joint 1.404255e-03

Joint ci ratio: 1.501080e-01	ci left: 1.312242e-03	ci right 1.527181e-03	k: 680	n:480000
Cons ci ratio: 3.577561e-02	ci left: 2.396536e-02	ci right 2.484040e-02	k: 11712	n:480000
KS ci ratio: 7.036048e-02	ci left: 6.198866e-03	ci right 6.652956e-03	k: 3083	n:480000
EML3   480000 perm   169 sec   (2841 perm/sec)   p_kst 6.422917e-03   p_cons 2.440000e-02   p_joint 1.416667e-03

Joint ci ratio: 1.514523e-01	ci left: 1.261893e-03	ci right 1.470605e-03	k: 668	n:490000
Cons ci ratio: 3.539050e-02	ci left: 2.399407e-02	ci right 2.486054e-02	k: 11968	n:490000
KS ci ratio: 6.959711e-02	ci left: 6.208706e-03	ci right 6.658384e-03	k: 3151	n:490000
EML3   490000 perm   174 sec   (2813 perm/sec)   p_kst 6.430612e-03   p_cons 2.442449e-02   p_joint 1.363265e-03

Joint ci ratio: 1.501122e-01	ci left: 1.259750e-03	ci right 1.466097e-03	k: 680	n:500000
Cons ci ratio: 3.503961e-02	ci left: 2.399195e-02	ci right 2.484957e-02	k: 12209	n:500000
KS ci ratio: 6.898755e-02	ci left: 6.194590e-03	ci right 6.639159e-03	k: 3207	n:500000
EML3   500000 perm   179 sec   (2786 perm/sec)   p_kst 6.414000e-03   p_cons 2.441800e-02   p_joint 1.360000e-03

Joint ci ratio: 1.490226e-01	ci left: 1.253923e-03	ci right 1.457692e-03	k: 690	n:510000
Cons ci ratio: 3.470467e-02	ci left: 2.398217e-02	ci right 2.483109e-02	k: 12446	n:510000
KS ci ratio: 6.834108e-02	ci left: 6.190681e-03	ci right 6.630641e-03	k: 3268	n:510000
EML3   510000 perm   185 sec   (2760 perm/sec)   p_kst 6.407843e-03   p_cons 2.440392e-02   p_joint 1.352941e-03

Joint ci ratio: 1.433221e-01	ci left: 1.333568e-03	ci right 1.541281e-03	k: 746	n:520000
Cons ci ratio: 3.439166e-02	ci left: 2.395564e-02	ci right 2.479582e-02	k: 12674	n:520000
KS ci ratio: 6.766134e-02	ci left: 6.196395e-03	ci right 6.632209e-03	k: 3334	n:520000
EML3   520000 perm   190 sec   (2734 perm/sec)   p_kst 6.411538e-03   p_cons 2.437308e-02   p_joint 1.434615e-03

Joint ci ratio: 1.422788e-01	ci left: 1.328419e-03	ci right 1.533697e-03	k: 757	n:530000
Cons ci ratio: 3.406128e-02	ci left: 2.396570e-02	ci right 2.479800e-02	k: 12921	n:530000
KS ci ratio: 6.709089e-02	ci left: 6.185216e-03	ci right 6.616433e-03	k: 3391	n:530000
EML3   530000 perm   196 sec   (2708 perm/sec)   p_kst 6.398113e-03   p_cons 2.437925e-02   p_joint 1.428302e-03

Joint ci ratio: 1.410744e-01	ci left: 1.327039e-03	ci right 1.530222e-03	k: 770	n:540000
Cons ci ratio: 3.375994e-02	ci left: 2.394787e-02	ci right 2.477206e-02	k: 13153	n:540000
KS ci ratio: 6.650552e-02	ci left: 6.179929e-03	ci right 6.606874e-03	k: 3451	n:540000
EML3   540000 perm   201 sec   (2681 perm/sec)   p_kst 6.390741e-03   p_cons 2.435741e-02   p_joint 1.425926e-03

Joint ci ratio: 1.400791e-01	ci left: 1.322208e-03	ci right 1.523103e-03	k: 781	n:550000
Cons ci ratio: 3.344855e-02	ci left: 2.395597e-02	ci right 2.477268e-02	k: 13399	n:550000
KS ci ratio: 6.594466e-02	ci left: 6.173063e-03	ci right 6.595799e-03	k: 3510	n:550000
EML3   550000 perm   207 sec   (2655 perm/sec)   p_kst 6.381818e-03   p_cons 2.436182e-02   p_joint 1.420000e-03

Joint ci ratio: 1.388418e-01	ci left: 1.322725e-03	ci right 1.521776e-03	k: 795	n:560000
Cons ci ratio: 3.317553e-02	ci left: 2.392131e-02	ci right 2.473005e-02	k: 13621	n:560000
KS ci ratio: 6.544389e-02	ci left: 6.157672e-03	ci right 6.576031e-03	k: 3564	n:560000
EML3   560000 perm   213 sec   (2630 perm/sec)   p_kst 6.364286e-03   p_cons 2.432321e-02   p_joint 1.419643e-03

Joint ci ratio: 1.374669e-01	ci left: 1.326619e-03	ci right 1.524118e-03	k: 811	n:570000
Cons ci ratio: 3.288596e-02	ci left: 2.392095e-02	ci right 2.472249e-02	k: 13862	n:570000
KS ci ratio: 6.473868e-02	ci left: 6.184260e-03	ci right 6.599728e-03	k: 3642	n:570000
EML3   570000 perm   219 sec   (2604 perm/sec)   p_kst 6.389474e-03   p_cons 2.431930e-02   p_joint 1.422807e-03

Joint ci ratio: 1.364625e-01	ci left: 1.323727e-03	ci right 1.519239e-03	k: 823	n:580000
Cons ci ratio: 3.260977e-02	ci left: 2.391208e-02	ci right 2.470647e-02	k: 14098	n:580000
KS ci ratio: 6.427344e-02	ci left: 6.167539e-03	ci right 6.578794e-03	k: 3695	n:580000
EML3   580000 perm   225 sec   (2580 perm/sec)   p_kst 6.370690e-03   p_cons 2.430690e-02   p_joint 1.418966e-03

Joint ci ratio: 1.340424e-01	ci left: 1.350419e-03	ci right 1.546054e-03	k: 853	n:590000
Cons ci ratio: 3.234390e-02	ci left: 2.389850e-02	ci right 2.468584e-02	k: 14331	n:590000
KS ci ratio: 6.373260e-02	ci left: 6.168075e-03	ci right 6.575778e-03	k: 3758	n:590000
EML3   590000 perm   231 sec   (2556 perm/sec)   p_kst 6.369492e-03   p_cons 2.428983e-02   p_joint 1.445763e-03

Joint ci ratio: 1.323477e-01	ci left: 1.363358e-03	ci right 1.558174e-03	k: 875	n:600000
Cons ci ratio: 3.208216e-02	ci left: 2.388870e-02	ci right 2.466924e-02	k: 14566	n:600000
KS ci ratio: 6.310556e-02	ci left: 6.188294e-03	ci right 6.593161e-03	k: 3833	n:600000
EML3   600000 perm   237 sec   (2533 perm/sec)   p_kst 6.388333e-03   p_cons 2.427667e-02   p_joint 1.458333e-03

Joint ci ratio: 1.312289e-01	ci left: 1.364787e-03	ci right 1.558030e-03	k: 890	n:610000
Cons ci ratio: 3.176187e-02	ci left: 2.397522e-02	ci right 2.475062e-02	k: 14860	n:610000
KS ci ratio: 6.253694e-02	ci left: 6.199799e-03	ci right 6.601632e-03	k: 3903	n:610000
EML3   610000 perm   243 sec   (2511 perm/sec)   p_kst 6.398361e-03   p_cons 2.436066e-02   p_joint 1.459016e-03

Joint ci ratio: 1.303543e-01	ci left: 1.361496e-03	ci right 1.552889e-03	k: 902	n:620000
Cons ci ratio: 3.151604e-02	ci left: 2.396135e-02	ci right 2.473020e-02	k: 15093	n:620000
KS ci ratio: 6.206993e-02	ci left: 6.193480e-03	ci right 6.591798e-03	k: 3962	n:620000
EML3   620000 perm   249 sec   (2489 perm/sec)   p_kst 6.390323e-03   p_cons 2.434355e-02   p_joint 1.454839e-03

Joint ci ratio: 1.342060e-01	ci left: 1.261606e-03	ci right 1.444616e-03	k: 851	n:630000
Cons ci ratio: 3.124660e-02	ci left: 2.399205e-02	ci right 2.475518e-02	k: 15354	n:630000
KS ci ratio: 6.152093e-02	ci left: 6.206129e-03	ci right 6.601605e-03	k: 4033	n:630000
EML3   630000 perm   255 sec   (2468 perm/sec)   p_kst 6.401587e-03   p_cons 2.437143e-02   p_joint 1.350794e-03

Joint ci ratio: 1.357314e-01	ci left: 1.213206e-03	ci right 1.391357e-03	k: 832	n:640000
Cons ci ratio: 3.100227e-02	ci left: 2.399391e-02	ci right 2.475103e-02	k: 15597	n:640000
KS ci ratio: 6.114385e-02	ci left: 6.186083e-03	ci right 6.577780e-03	k: 4083	n:640000
EML3   640000 perm   262 sec   (2446 perm/sec)   p_kst 6.379687e-03   p_cons 2.437031e-02   p_joint 1.300000e-03

Joint ci ratio: 1.352460e-01	ci left: 1.203459e-03	ci right 1.379495e-03	k: 838	n:650000
Cons ci ratio: 3.075264e-02	ci left: 2.401253e-02	ci right 2.476402e-02	k: 15851	n:650000
KS ci ratio: 6.061151e-02	ci left: 6.199997e-03	ci right 6.589037e-03	k: 4155	n:650000
EML3   650000 perm   268 sec   (2425 perm/sec)   p_kst 6.392308e-03   p_cons 2.438615e-02   p_joint 1.289231e-03

Joint ci ratio: 1.342102e-01	ci left: 1.204258e-03	ci right 1.378954e-03	k: 851	n:660000
Cons ci ratio: 3.053032e-02	ci left: 2.399752e-02	ci right 2.474302e-02	k: 16083	n:660000
KS ci ratio: 6.016449e-02	ci left: 6.198579e-03	ci right 6.584561e-03	k: 4217	n:660000
EML3   660000 perm   275 sec   (2404 perm/sec)   p_kst 6.389394e-03   p_cons 2.436818e-02   p_joint 1.289394e-03

Joint ci ratio: 1.305788e-01	ci left: 1.255556e-03	ci right 1.432383e-03	k: 899	n:670000
Cons ci ratio: 3.025768e-02	ci left: 2.406891e-02	ci right 2.480984e-02	k: 16373	n:670000
KS ci ratio: 5.967111e-02	ci left: 6.208976e-03	ci right 6.592326e-03	k: 4287	n:670000
EML3   670000 perm   281 sec   (2384 perm/sec)   p_kst 6.398507e-03   p_cons 2.443731e-02   p_joint 1.341791e-03

Joint ci ratio: 1.294331e-01	ci left: 1.259856e-03	ci right 1.435613e-03	k: 915	n:680000
Cons ci ratio: 3.007836e-02	ci left: 2.400246e-02	ci right 2.473689e-02	k: 16570	n:680000
KS ci ratio: 5.927873e-02	ci left: 6.200243e-03	ci right 6.580451e-03	k: 4344	n:680000
EML3   680000 perm   288 sec   (2364 perm/sec)   p_kst 6.388235e-03   p_cons 2.436765e-02   p_joint 1.345588e-03

Joint ci ratio: 1.284551e-01	ci left: 1.261233e-03	ci right 1.435751e-03	k: 929	n:690000
Cons ci ratio: 2.985751e-02	ci left: 2.400845e-02	ci right 2.473758e-02	k: 16816	n:690000
KS ci ratio: 5.879996e-02	ci left: 6.211765e-03	ci right 6.589498e-03	k: 4415	n:690000
EML3   690000 perm   294 sec   (2345 perm/sec)   p_kst 6.398551e-03   p_cons 2.437101e-02   p_joint 1.346377e-03

Joint ci ratio: 1.284564e-01	ci left: 1.243214e-03	ci right 1.415241e-03	k: 929	n:700000
Cons ci ratio: 2.963166e-02	ci left: 2.402989e-02	ci right 2.475405e-02	k: 17073	n:700000
KS ci ratio: 5.828033e-02	ci left: 6.234233e-03	ci right 6.609869e-03	k: 4494	n:700000
EML3   700000 perm   301 sec   (2326 perm/sec)   p_kst 6.420000e-03   p_cons 2.439000e-02   p_joint 1.327143e-03

Joint ci ratio: 1.285961e-01	ci left: 1.222977e-03	ci right 1.392402e-03	k: 927	n:710000
Cons ci ratio: 2.942043e-02	ci left: 2.403536e-02	ci right 2.475444e-02	k: 17319	n:710000
KS ci ratio: 5.788260e-02	ci left: 6.232482e-03	ci right 6.605365e-03	k: 4556	n:710000
EML3   710000 perm   308 sec   (2307 perm/sec)   p_kst 6.416901e-03   p_cons 2.439296e-02   p_joint 1.305634e-03

Joint ci ratio: 1.271646e-01	ci left: 1.234225e-03	ci right 1.403161e-03	k: 948	n:720000
Cons ci ratio: 2.922389e-02	ci left: 2.402416e-02	ci right 2.473801e-02	k: 17553	n:720000
KS ci ratio: 5.738048e-02	ci left: 6.255432e-03	ci right 6.626333e-03	k: 4636	n:720000
EML3   720000 perm   315 sec   (2288 perm/sec)   p_kst 6.438889e-03   p_cons 2.437917e-02   p_joint 1.316667e-03

Joint ci ratio: 1.130204e-01	ci left: 1.552203e-03	ci right 1.739459e-03	k: 1200	n:730000
Cons ci ratio: 2.902120e-02	ci left: 2.402959e-02	ci right 2.473857e-02	k: 17799	n:730000
KS ci ratio: 5.700688e-02	ci left: 6.252108e-03	ci right 6.620319e-03	k: 4697	n:730000
EML3   730000 perm   322 sec   (2270 perm/sec)   p_kst 6.434247e-03   p_cons 2.438219e-02   p_joint 1.643836e-03

Joint ci ratio: 1.125998e-01	ci left: 1.543046e-03	ci right 1.728458e-03	k: 1209	n:740000
Cons ci ratio: 2.880876e-02	ci left: 2.405771e-02	ci right 2.476224e-02	k: 18062	n:740000
KS ci ratio: 5.656874e-02	ci left: 6.264869e-03	ci right 6.630903e-03	k: 4770	n:740000
EML3   740000 perm   329 sec   (2252 perm/sec)   p_kst 6.445946e-03   p_cons 2.440811e-02   p_joint 1.633784e-03

Joint ci ratio: 1.145618e-01	ci left: 1.469355e-03	ci right 1.649197e-03	k: 1168	n:750000
Cons ci ratio: 2.863940e-02	ci left: 2.402154e-02	ci right 2.472081e-02	k: 18277	n:750000
KS ci ratio: 5.619312e-02	ci left: 6.265468e-03	ci right 6.629027e-03	k: 4834	n:750000
EML3   750000 perm   336 sec   (2234 perm/sec)   p_kst 6.445333e-03   p_cons 2.436933e-02   p_joint 1.557333e-03

Joint ci ratio: 1.136417e-01	ci left: 1.474308e-03	ci right 1.653210e-03	k: 1187	n:760000
Cons ci ratio: 2.845800e-02	ci left: 2.401116e-02	ci right 2.470563e-02	k: 18511	n:760000
KS ci ratio: 5.580196e-02	ci left: 6.271249e-03	ci right 6.632529e-03	k: 4902	n:760000
EML3   760000 perm   343 sec   (2216 perm/sec)   p_kst 6.450000e-03   p_cons 2.435658e-02   p_joint 1.561842e-03

Joint ci ratio: 1.128841e-01	ci left: 1.475352e-03	ci right 1.653107e-03	k: 1203	n:770000
Cons ci ratio: 2.828774e-02	ci left: 2.398817e-02	ci right 2.467775e-02	k: 18735	n:770000
KS ci ratio: 5.537402e-02	ci left: 6.287135e-03	ci right 6.646464e-03	k: 4978	n:770000
EML3   770000 perm   350 sec   (2199 perm/sec)   p_kst 6.464935e-03   p_cons 2.433117e-02   p_joint 1.562338e-03

Joint ci ratio: 1.124650e-01	ci left: 1.467650e-03	ci right 1.643777e-03	k: 1212	n:780000
Cons ci ratio: 2.810531e-02	ci left: 2.399124e-02	ci right 2.467640e-02	k: 18979	n:780000
KS ci ratio: 5.507654e-02	ci left: 6.274804e-03	ci right 6.631440e-03	k: 5032	n:780000
EML3   780000 perm   357 sec   (2183 perm/sec)   p_kst 6.451282e-03   p_cons 2.433205e-02   p_joint 1.553846e-03

Joint ci ratio: 1.116850e-01	ci left: 1.469988e-03	ci right 1.645092e-03	k: 1229	n:790000
Cons ci ratio: 2.795022e-02	ci left: 2.395403e-02	ci right 2.463428e-02	k: 19191	n:790000
KS ci ratio: 5.472428e-02	ci left: 6.276525e-03	ci right 6.630906e-03	k: 5097	n:790000
EML3   790000 perm   365 sec   (2166 perm/sec)   p_kst 6.451899e-03   p_cons 2.429241e-02   p_joint 1.555696e-03

Joint ci ratio: 1.119141e-01	ci left: 1.445537e-03	ci right 1.618105e-03	k: 1224	n:800000
Cons ci ratio: 2.776249e-02	ci left: 2.397734e-02	ci right 2.465361e-02	k: 19451	n:800000
KS ci ratio: 5.436810e-02	ci left: 6.280677e-03	ci right 6.632911e-03	k: 5164	n:800000
EML3   800000 perm   372 sec   (2149 perm/sec)   p_kst 6.455000e-03   p_cons 2.431375e-02   p_joint 1.530000e-03

Joint ci ratio: 1.249526e-01	ci left: 1.137737e-03	ci right 1.290557e-03	k: 982	n:810000
Cons ci ratio: 2.758926e-02	ci left: 2.398170e-02	ci right 2.465381e-02	k: 19696	n:810000
KS ci ratio: 5.407603e-02	ci left: 6.271335e-03	ci right 6.621097e-03	k: 5220	n:810000
EML3   810000 perm   380 sec   (2133 perm/sec)   p_kst 6.444444e-03   p_cons 2.431605e-02   p_joint 1.212346e-03

Joint ci ratio: 1.170523e-01	ci left: 1.285890e-03	ci right 1.446934e-03	k: 1119	n:820000
Cons ci ratio: 2.741782e-02	ci left: 2.398839e-02	ci right 2.465644e-02	k: 19943	n:820000
KS ci ratio: 5.370162e-02	ci left: 6.282681e-03	ci right 6.630575e-03	k: 5293	n:820000
EML3   820000 perm   388 sec   (2115 perm/sec)   p_kst 6.454878e-03   p_cons 2.432073e-02   p_joint 1.364634e-03

Joint ci ratio: 1.183837e-01	ci left: 1.241162e-03	ci right 1.398496e-03	k: 1094	n:830000
Cons ci ratio: 2.724677e-02	ci left: 2.399972e-02	ci right 2.466385e-02	k: 20194	n:830000
KS ci ratio: 5.341508e-02	ci left: 6.274741e-03	ci right 6.620284e-03	k: 5350	n:830000
EML3   830000 perm   396 sec   (2097 perm/sec)   p_kst 6.445783e-03   p_cons 2.433012e-02   p_joint 1.318072e-03

Joint ci ratio: 1.174222e-01	ci left: 1.247183e-03	ci right 1.403908e-03	k: 1112	n:840000
Cons ci ratio: 2.709859e-02	ci left: 2.397649e-02	ci right 2.463632e-02	k: 20416	n:840000
KS ci ratio: 5.311825e-02	ci left: 6.270518e-03	ci right 6.613851e-03	k: 5410	n:840000
EML3   840000 perm   404 sec   (2082 perm/sec)   p_kst 6.440476e-03   p_cons 2.430476e-02   p_joint 1.323810e-03

Joint ci ratio: 1.168464e-01	ci left: 1.245072e-03	ci right 1.400711e-03	k: 1123	n:850000
Cons ci ratio: 2.694410e-02	ci left: 2.396902e-02	ci right 2.462482e-02	k: 20651	n:850000
KS ci ratio: 5.281659e-02	ci left: 6.268723e-03	ci right 6.609948e-03	k: 5472	n:850000
EML3   850000 perm   411 sec   (2067 perm/sec)   p_kst 6.437647e-03   p_cons 2.429529e-02   p_joint 1.321176e-03

Joint ci ratio: 1.177422e-01	ci left: 1.211406e-03	ci right 1.364078e-03	k: 1106	n:860000
Cons ci ratio: 2.678960e-02	ci left: 2.396635e-02	ci right 2.461826e-02	k: 20890	n:860000
KS ci ratio: 5.259180e-02	ci left: 6.249760e-03	ci right 6.588461e-03	k: 5519	n:860000
EML3   860000 perm   419 sec   (2052 perm/sec)   p_kst 6.417442e-03   p_cons 2.429070e-02   p_joint 1.286047e-03

Joint ci ratio: 1.169003e-01	ci left: 1.215333e-03	ci right 1.367329e-03	k: 1122	n:870000
Cons ci ratio: 2.662933e-02	ci left: 2.397860e-02	ci right 2.462688e-02	k: 21142	n:870000
KS ci ratio: 5.228484e-02	ci left: 6.251657e-03	ci right 6.588424e-03	k: 5584	n:870000
EML3   870000 perm   427 sec   (2038 perm/sec)   p_kst 6.418391e-03   p_cons 2.430115e-02   p_joint 1.289655e-03

Joint ci ratio: 1.235818e-01	ci left: 1.071456e-03	ci right 1.213678e-03	k: 1004	n:880000
Cons ci ratio: 2.647951e-02	ci left: 2.397703e-02	ci right 2.462156e-02	k: 21382	n:880000
KS ci ratio: 5.200172e-02	ci left: 6.249029e-03	ci right 6.583778e-03	k: 5645	n:880000
EML3   880000 perm   435 sec   (2024 perm/sec)   p_kst 6.414773e-03   p_cons 2.429773e-02   p_joint 1.140909e-03

Joint ci ratio: 1.231540e-01	ci left: 1.067040e-03	ci right 1.208150e-03	k: 1011	n:890000
Cons ci ratio: 2.633344e-02	ci left: 2.397327e-02	ci right 2.461410e-02	k: 21620	n:890000
KS ci ratio: 5.172771e-02	ci left: 6.245357e-03	ci right 6.578093e-03	k: 5705	n:890000
EML3   890000 perm   443 sec   (2009 perm/sec)   p_kst 6.410112e-03   p_cons 2.429213e-02   p_joint 1.135955e-03

Joint ci ratio: 1.232768e-01	ci left: 1.053029e-03	ci right 1.192436e-03	k: 1009	n:900000
Cons ci ratio: 2.618178e-02	ci left: 2.398396e-02	ci right 2.462133e-02	k: 21871	n:900000
KS ci ratio: 5.143555e-02	ci left: 6.247255e-03	ci right 6.578156e-03	k: 5770	n:900000
EML3   900000 perm   451 sec   (1995 perm/sec)   p_kst 6.411111e-03   p_cons 2.430111e-02   p_joint 1.121111e-03

Joint ci ratio: 1.097481e-01	ci left: 1.323151e-03	ci right 1.477853e-03	k: 1273	n:910000
Cons ci ratio: 2.602910e-02	ci left: 2.400098e-02	ci right 2.463502e-02	k: 22128	n:910000
KS ci ratio: 5.157245e-02	ci left: 6.146053e-03	ci right 6.472486e-03	k: 5740	n:910000
EML3   910000 perm   459 sec   (1982 perm/sec)   p_kst 6.307692e-03   p_cons 2.431648e-02   p_joint 1.398901e-03

Joint ci ratio: 1.190463e-01	ci left: 1.107083e-03	ci right 1.248262e-03	k: 1082	n:920000
Cons ci ratio: 2.590398e-02	ci left: 2.397227e-02	ci right 2.460247e-02	k: 22343	n:920000
KS ci ratio: 5.129624e-02	ci left: 6.145773e-03	ci right 6.470391e-03	k: 5802	n:920000
EML3   920000 perm   467 sec   (1968 perm/sec)   p_kst 6.306522e-03   p_cons 2.428587e-02   p_joint 1.176087e-03

Joint ci ratio: 1.182841e-01	ci left: 1.109786e-03	ci right 1.250340e-03	k: 1096	n:930000
Cons ci ratio: 2.575900e-02	ci left: 2.398373e-02	ci right 2.461064e-02	k: 22595	n:930000
KS ci ratio: 5.100692e-02	ci left: 6.149749e-03	ci right 6.472692e-03	k: 5868	n:930000
EML3   930000 perm   476 sec   (1955 perm/sec)   p_kst 6.309677e-03   p_cons 2.429570e-02   p_joint 1.178495e-03

Joint ci ratio: 1.178020e-01	ci left: 1.107271e-03	ci right 1.246895e-03	k: 1105	n:940000
Cons ci ratio: 2.563195e-02	ci left: 2.396640e-02	ci right 2.458973e-02	k: 22820	n:940000
KS ci ratio: 5.075256e-02	ci left: 6.146294e-03	ci right 6.467398e-03	k: 5927	n:940000
EML3   940000 perm   484 sec   (1942 perm/sec)   p_kst 6.305319e-03   p_cons 2.427660e-02   p_joint 1.175532e-03

Joint ci ratio: 1.171156e-01	ci left: 1.108898e-03	ci right 1.247856e-03	k: 1118	n:950000
Cons ci ratio: 2.549373e-02	ci left: 2.397351e-02	ci right 2.459361e-02	k: 23068	n:950000
KS ci ratio: 5.050198e-02	ci left: 6.142915e-03	ci right 6.462212e-03	k: 5986	n:950000
EML3   950000 perm   493 sec   (1928 perm/sec)   p_kst 6.301053e-03   p_cons 2.428211e-02   p_joint 1.176842e-03

Joint ci ratio: 1.165443e-01	ci left: 1.108471e-03	ci right 1.246651e-03	k: 1129	n:960000
Cons ci ratio: 2.536330e-02	ci left: 2.397012e-02	ci right 2.458692e-02	k: 23306	n:960000
KS ci ratio: 5.018828e-02	ci left: 6.156069e-03	ci right 6.474005e-03	k: 6061	n:960000
EML3   960000 perm   501 sec   (1915 perm/sec)   p_kst 6.313542e-03   p_cons 2.427708e-02   p_joint 1.176042e-03

Joint ci ratio: 9.964958e-02	ci left: 1.513396e-03	ci right 1.673109e-03	k: 1544	n:970000
Cons ci ratio: 2.524639e-02	ci left: 2.394530e-02	ci right 2.455858e-02	k: 23523	n:970000
KS ci ratio: 4.992541e-02	ci left: 6.157758e-03	ci right 6.474067e-03	k: 6125	n:970000
EML3   970000 perm   510 sec   (1902 perm/sec)   p_kst 6.314433e-03   p_cons 2.425052e-02   p_joint 1.591753e-03

Outputting figure to mutsig2_images.part000000000056/EML3.3_2779_970000_0.0063144_0.024251_0.0015918.png
                gene_name: EML3
               theta_stop: 0.100 
                    nperm: 970000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0062 
       ci_ks_bounds_right: 0.0065 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0017 

Current progress: 66 percent done.
EMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 1.982091e-02	ci left: 7.883719e-01	ci right 8.042551e-01	k: 7964	n:10000
EMR2   10000 perm   2 sec   (6448 perm/sec)   p_kst 7.964000e-01   p_cons 4.949000e-01   p_joint 8.808000e-01

Outputting figure to mutsig2_images.part000000000056/EMR2.3_2552_10000_0.7964_0.4949_0.8808.png
                gene_name: EMR2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 68 percent done.
ENGASE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
KS ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
ENGASE   10000 perm   2 sec   (6209 perm/sec)   p_kst 9.656000e-01   p_cons 7.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ENGASE.3_2288_10000_0.9656_0.7425_1.png
                gene_name: ENGASE
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
EIF4E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.416248e-02	ci left: 2.629989e-01	ci right 2.805343e-01	k: 2717	n:10000
Cons ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
KS ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
EIF4E3   10000 perm   1 sec   (7483 perm/sec)   p_kst 7.852000e-01   p_cons 6.330000e-02   p_joint 2.717000e-01

Joint ci ratio: 8.832658e-02	ci left: 8.567661e-02	ci right 9.364316e-02	k: 1792	n:20000
Cons ci ratio: 1.065354e-01	ci left: 6.001272e-02	ci right 6.681489e-02	k: 1267	n:20000
KS ci ratio: 1.449351e-02	ci left: 7.795430e-01	ci right 7.909739e-01	k: 15706	n:20000
EIF4E3   20000 perm   3 sec   (6596 perm/sec)   p_kst 7.853000e-01   p_cons 6.335000e-02   p_joint 8.960000e-02

Joint ci ratio: 3.307271e-02	ci left: 3.136273e-01	ci right 3.242078e-01	k: 9567	n:30000
Cons ci ratio: 8.655001e-02	ci left: 6.122341e-02	ci right 6.679473e-02	k: 1919	n:30000
KS ci ratio: 1.187829e-02	ci left: 7.793329e-01	ci right 7.886787e-01	k: 23521	n:30000
EIF4E3   30000 perm   5 sec   (6277 perm/sec)   p_kst 7.840333e-01   p_cons 6.396667e-02   p_joint 3.189000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4E3.2_703_30000_0.78403_0.063967_0.3189.png
                gene_name: EIF4E3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 71 percent done.
EIF4H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
KS ci ratio: 1.175938e-02	ci left: 9.119352e-01	ci right 9.228202e-01	k: 9175	n:10000
EIF4H   10000 perm   1 sec   (7314 perm/sec)   p_kst 9.175000e-01   p_cons 5.250000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EIF4H.2_775_10000_0.9175_0.525_1.png
                gene_name: EIF4H
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
EIF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
Cons ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
EIF5   10000 perm   2 sec   (6439 perm/sec)   p_kst 2.405000e-01   p_cons 4.099000e-01   p_joint 8.523000e-01

Outputting figure to mutsig2_images.part000000000056/EIF5.2_1336_10000_0.2405_0.4099_0.8523.png
                gene_name: EIF5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 75 percent done.
ELAVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
KS ci ratio: 4.638942e-02	ci left: 4.068133e-01	ci right 4.262354e-01	k: 4165	n:10000
ELAVL3   10000 perm   1 sec   (7376 perm/sec)   p_kst 4.165000e-01   p_cons 4.420000e-02   p_joint 6.010000e-02

Joint ci ratio: 1.104472e-01	ci left: 5.596855e-02	ci right 6.256031e-02	k: 1184	n:20000
Cons ci ratio: 1.297411e-01	ci left: 4.081147e-02	ci right 4.652216e-02	k: 872	n:20000
KS ci ratio: 3.258359e-02	ci left: 4.129473e-01	ci right 4.266760e-01	k: 8396	n:20000
ELAVL3   20000 perm   3 sec   (6513 perm/sec)   p_kst 4.198000e-01   p_cons 4.360000e-02   p_joint 5.920000e-02

Joint ci ratio: 9.024786e-02	ci left: 5.649034e-02	ci right 6.186209e-02	k: 1774	n:30000
Cons ci ratio: 1.055343e-01	ci left: 4.164178e-02	ci right 4.631372e-02	k: 1318	n:30000
KS ci ratio: 2.672571e-02	ci left: 4.120110e-01	ci right 4.232050e-01	k: 12528	n:30000
ELAVL3   30000 perm   5 sec   (6184 perm/sec)   p_kst 4.176000e-01   p_cons 4.393333e-02   p_joint 5.913333e-02

Joint ci ratio: 6.393695e-02	ci left: 8.314692e-02	ci right 8.866337e-02	k: 3435	n:40000
Cons ci ratio: 5.350176e-02	ci left: 1.151503e-01	ci right 1.215052e-01	k: 4732	n:40000
KS ci ratio: 2.319672e-02	ci left: 4.116876e-01	ci right 4.213746e-01	k: 16661	n:40000
ELAVL3   40000 perm   7 sec   (5971 perm/sec)   p_kst 4.165250e-01   p_cons 1.183000e-01   p_joint 8.587500e-02

Outputting figure to mutsig2_images.part000000000056/ELAVL3.2_1132_40000_0.41652_0.1183_0.085875.png
                gene_name: ELAVL3
               theta_stop: 0.064 
                    nperm: 40000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 77 percent done.
ELF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
ELF3   10000 perm   1 sec   (7501 perm/sec)   p_kst 1.274000e-01   p_cons 1.293000e-01   p_joint 3.297000e-01

Joint ci ratio: 9.926676e-03	ci left: 8.818701e-01	ci right 8.907173e-01	k: 17727	n:20000
Cons ci ratio: 7.257410e-02	ci left: 1.226609e-01	ci right 1.319478e-01	k: 2545	n:20000
KS ci ratio: 7.278719e-02	ci left: 1.220210e-01	ci right 1.312878e-01	k: 2532	n:20000
ELF3   20000 perm   3 sec   (6648 perm/sec)   p_kst 1.266000e-01   p_cons 1.272500e-01   p_joint 8.863500e-01

Outputting figure to mutsig2_images.part000000000056/ELF3.2_1148_20000_0.1266_0.12725_0.88635.png
                gene_name: ELF3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 79 percent done.
ELK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
Cons ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
ELK1   10000 perm   1 sec   (7229 perm/sec)   p_kst 3.849000e-01   p_cons 4.333000e-01   p_joint 5.402000e-01

Outputting figure to mutsig2_images.part000000000056/ELK1.2_1307_10000_0.3849_0.4333_0.5402.png
                gene_name: ELK1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 80 percent done.
ELL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
Cons ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KS ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
ELL3   10000 perm   1 sec   (7181 perm/sec)   p_kst 8.020000e-02   p_cons 5.917000e-01   p_joint 2.615000e-01

Joint ci ratio: 4.231550e-02	ci left: 2.938522e-01	ci right 3.066059e-01	k: 6004	n:20000
Cons ci ratio: 2.307432e-02	ci left: 5.837975e-01	ci right 5.974761e-01	k: 11813	n:20000
KS ci ratio: 9.246592e-02	ci left: 7.862504e-02	ci right 8.629687e-02	k: 1648	n:20000
ELL3   20000 perm   3 sec   (6349 perm/sec)   p_kst 8.240000e-02   p_cons 5.906500e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000056/ELL3.2_1238_20000_0.0824_0.59065_0.3002.png
                gene_name: ELL3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 82 percent done.
ELMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
KS ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
ELMOD2   10000 perm   1 sec   (7356 perm/sec)   p_kst 7.002000e-01   p_cons 7.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELMOD2.2_914_10000_0.7002_0.7168_1.png
                gene_name: ELMOD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ELN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
ELN   10000 perm   2 sec   (6660 perm/sec)   p_kst 4.418000e-01   p_cons 5.140000e-02   p_joint 9.100000e-02

Joint ci ratio: 4.531278e-02	ci left: 2.660896e-01	ci right 2.784767e-01	k: 5445	n:20000
Cons ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
KS ci ratio: 3.114780e-02	ci left: 4.350013e-01	ci right 4.488156e-01	k: 8838	n:20000
ELN   20000 perm   3 sec   (5896 perm/sec)   p_kst 4.419000e-01   p_cons 7.275000e-02   p_joint 2.722500e-01

Outputting figure to mutsig2_images.part000000000056/ELN.2_2322_20000_0.4419_0.07275_0.27225.png
                gene_name: ELN
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 86 percent done.
ELOVL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
ELOVL4   10000 perm   1 sec   (7428 perm/sec)   p_kst 8.163000e-01   p_cons 6.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELOVL4.2_969_10000_0.8163_0.6783_1.png
                gene_name: ELOVL4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ELOVL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
KS ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
ELOVL7   10000 perm   1 sec   (7442 perm/sec)   p_kst 8.338000e-01   p_cons 2.907000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELOVL7.2_874_10000_0.8338_0.2907_1.png
                gene_name: ELOVL7
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
EME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
Cons ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
KS ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
EME1   10000 perm   1 sec   (6926 perm/sec)   p_kst 4.114000e-01   p_cons 6.739000e-01   p_joint 8.928000e-01

Outputting figure to mutsig2_images.part000000000056/EME1.2_1784_10000_0.4114_0.6739_0.8928.png
                gene_name: EME1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
EME2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
KS ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
EME2   10000 perm   1 sec   (7195 perm/sec)   p_kst 8.487000e-01   p_cons 5.428000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EME2.2_1366_10000_0.8487_0.5428_1.png
                gene_name: EME2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
EMID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
EMID2   10000 perm   1 sec   (7082 perm/sec)   p_kst 8.547000e-01   p_cons 5.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EMID2.2_1371_10000_0.8547_0.5565_1.png
                gene_name: EMID2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
EMX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
KS ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
EMX2   10000 perm   1 sec   (7553 perm/sec)   p_kst 6.828000e-01   p_cons 8.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EMX2.2_771_10000_0.6828_0.8087_1.png
                gene_name: EMX2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ENC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
KS ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
ENC1   10000 perm   1 sec   (6983 perm/sec)   p_kst 1.703000e-01   p_cons 3.232000e-01   p_joint 2.821000e-01

Outputting figure to mutsig2_images.part000000000056/ENC1.2_1774_10000_0.1703_0.3232_0.2821.png
                gene_name: ENC1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 98 percent done.
ENDOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
KS ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
ENDOD1   10000 perm   1 sec   (7030 perm/sec)   p_kst 6.427000e-01   p_cons 6.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ENDOD1.2_1511_10000_0.6427_0.6111_1.png
                gene_name: ENDOD1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000056
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 56 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4421915: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000057> was used as the working directory.
Started at Wed Oct 24 17:42:31 2012
Results reported at Wed Oct 24 19:48:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000057.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000057.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 57  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000057.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7698.34 sec.
    Max Memory :      8080 MB
    Max Swap   :     10580 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
57
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 57
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 57: processing genes 5067 - 5157
Calculating significance of each gene.
Using projection method.
5067	ENHO	2.836977e-01
5068	ENKUR	2.102608e-01
5069	ENO1	7.242580e-01
5070	ENO2	1
5071	ENO3	1
5072	ENOPH1	7.436108e-01
5073	ENOSF1	5.967631e-01
5074	ENOX1	8.545092e-02
5075	ENOX2	2.144621e-02
5076	ENPEP	7.033969e-01
5077	ENPP1	7.769748e-01
5078	ENPP2	1.315236e-01
5079	ENPP3	6.747117e-04
5080	ENPP4	1
5081	ENPP5	9.095234e-01
5082	ENPP6	7.100021e-01
5083	ENPP7	9.003895e-01
5084	ENSA	1.597305e-01
5085	ENTHD1	2.329030e-01
5086	ENTPD1	3.196270e-01
5087	ENTPD2	7.116916e-01
5088	ENTPD3	1
5089	ENTPD4	1
5090	ENTPD5	1
5091	ENTPD6	4.704059e-01
5092	ENTPD7	5.717491e-01
5093	ENTPD8	1
5094	ENY2	1
5095	EOMES	6.552030e-01
5096	EP300	9.999799e-01
5097	EP400	1
5098	EPAS1	6.428648e-01
5099	EPB41	1
5100	EPB41L1	6.558569e-01
5101	EPB41L2	9.943074e-01
5102	EPB41L3	1
5103	EPB41L4A	9.609119e-01
5104	EPB41L4B	8.215087e-01
5105	EPB41L5	6.654053e-01
5106	EPB42	9.033857e-01
5107	EPB49	1
5108	EPC1	7.394671e-01
5109	EPC2	5.674089e-01
5110	EPCAM	3.441337e-01
5111	EPDR1	1.206798e-01
5112	EPGN	1
5113	EPHA1	8.067974e-01
5114	EPHA10	1
5115	EPHA2	9.862963e-01
5116	EPHA3	9.064049e-01
5117	EPHA4	9.963257e-02
5118	EPHA5	1.343623e-01
5119	EPHA6	7.583171e-09
5120	EPHA7	9.477706e-05
5121	EPHA8	9.560981e-01
5122	EPHB1	1.104679e-05
5123	EPHB2	6.927446e-01
5124	EPHB3	6.564141e-01
5125	EPHB4	6.084512e-01
5126	EPHB6	7.860209e-01
5127	EPHX1	6.978571e-01
5128	EPHX2	9.442444e-01
5129	EPHX3	6.496716e-01
5130	EPHX4	6.716181e-01
5131	EPM2A	6.463284e-01
5132	EPM2AIP1	8.875873e-01
5133	EPN1	4.938906e-02
5134	EPN2	4.463019e-01
5135	EPN3	1
5136	EPO	1
5137	EPOR	9.491415e-01
5138	EPPK1	1
5139	EPRS	4.508129e-01
5140	EPS15	1
5141	EPS15L1	6.301790e-01
5142	EPS8	9.302438e-01
5143	EPS8L1	1
5144	EPS8L2	7.906580e-01
5145	EPS8L3	6.089954e-01
5146	EPSTI1	4.860365e-01
5147	EPT1	5.970780e-02
5148	EPX	9.847124e-01
5149	EPYC	2.735051e-01
5150	ERAL1	8.392255e-01
5151	ERAP1	1
5152	ERAP2	9.877835e-01
5153	ERAS	1.173453e-01
In gene ERBB2 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 3764    n = 1	mu =   3.68e-07
5154	ERBB2	2.281744e-01
5155	ERBB2IP	9.097876e-01
5156	ERBB3	9.992315e-01
5157	ERBB4	7.859207e-01
Done

Running MutSig 2:
Scatter job 57: processing genes 5067 - 5157
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EPHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
KS ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
EPHA6   10000 perm   3 sec   (3666 perm/sec)   p_kst 1.220000e-01   p_cons 2.600000e-03   p_joint 6.600000e-03

Joint ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
Cons ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
KS ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
EPHA6   20000 perm   8 sec   (2542 perm/sec)   p_kst 1.155000e-01   p_cons 2.600000e-03   p_joint 8.000000e-03

Joint ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
Cons ci ratio: 5.379686e-01	ci left: 1.294799e-03	ci right 2.272423e-03	k: 52	n:30000
KS ci ratio: 6.253758e-02	ci left: 1.121669e-01	ci right 1.194410e-01	k: 3473	n:30000
EPHA6   30000 perm   11 sec   (2726 perm/sec)   p_kst 1.157667e-01   p_cons 1.733333e-03   p_joint 7.133333e-03

Joint ci ratio: 2.368725e-01	ci left: 5.994581e-03	ci right 7.628253e-03	k: 271	n:40000
Cons ci ratio: 4.858149e-01	ci left: 1.232406e-03	ci right 2.042711e-03	k: 64	n:40000
KS ci ratio: 5.447234e-02	ci left: 1.114939e-01	ci right 1.177621e-01	k: 4584	n:40000
EPHA6   40000 perm   14 sec   (2801 perm/sec)   p_kst 1.146000e-01   p_cons 1.600000e-03   p_joint 6.775000e-03

Joint ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
Cons ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
KS ci ratio: 4.783633e-02	ci left: 1.155605e-01	ci right 1.212438e-01	k: 5919	n:50000
EPHA6   50000 perm   18 sec   (2842 perm/sec)   p_kst 1.183800e-01   p_cons 1.720000e-03   p_joint 4.960000e-03

Joint ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
Cons ci ratio: 3.859142e-01	ci left: 1.386353e-03	ci right 2.063309e-03	k: 102	n:60000
KS ci ratio: 4.367542e-02	ci left: 1.157755e-01	ci right 1.209615e-01	k: 7101	n:60000
EPHA6   60000 perm   21 sec   (2859 perm/sec)   p_kst 1.183500e-01   p_cons 1.700000e-03   p_joint 3.400000e-03

Joint ci ratio: 1.976871e-01	ci left: 5.033459e-03	ci right 6.150982e-03	k: 390	n:70000
Cons ci ratio: 3.560530e-01	ci left: 1.421511e-03	ci right 2.049521e-03	k: 120	n:70000
KS ci ratio: 4.056251e-02	ci left: 1.153215e-01	ci right 1.201102e-01	k: 8239	n:70000
EPHA6   70000 perm   24 sec   (2860 perm/sec)   p_kst 1.177000e-01   p_cons 1.714286e-03   p_joint 5.571429e-03

Joint ci ratio: 2.204304e-01	ci left: 3.503543e-03	ci right 4.383033e-03	k: 314	n:80000
Cons ci ratio: 3.346192e-01	ci left: 1.426492e-03	ci right 2.010597e-03	k: 136	n:80000
KS ci ratio: 3.792713e-02	ci left: 1.155614e-01	ci right 1.200414e-01	k: 9423	n:80000
EPHA6   80000 perm   28 sec   (2855 perm/sec)   p_kst 1.177875e-01   p_cons 1.700000e-03   p_joint 3.925000e-03

Joint ci ratio: 2.506105e-01	ci left: 2.371545e-03	ci right 3.061129e-03	k: 243	n:90000
Cons ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
KS ci ratio: 3.608094e-02	ci left: 1.138486e-01	ci right 1.180429e-01	k: 10434	n:90000
EPHA6   90000 perm   32 sec   (2843 perm/sec)   p_kst 1.159333e-01   p_cons 1.744444e-03   p_joint 2.700000e-03

Joint ci ratio: 2.437323e-01	ci left: 2.265704e-03	ci right 2.903693e-03	k: 257	n:100000
Cons ci ratio: 2.952195e-01	ci left: 1.500499e-03	ci right 2.029073e-03	k: 175	n:100000
KS ci ratio: 3.423515e-02	ci left: 1.139222e-01	ci right 1.179001e-01	k: 11590	n:100000
EPHA6   100000 perm   35 sec   (2830 perm/sec)   p_kst 1.159000e-01   p_cons 1.750000e-03   p_joint 2.570000e-03

Joint ci ratio: 2.335477e-01	ci left: 2.256323e-03	ci right 2.861289e-03	k: 280	n:110000
Cons ci ratio: 2.819189e-01	ci left: 1.507456e-03	ci right 2.010307e-03	k: 192	n:110000
KS ci ratio: 3.277453e-02	ci left: 1.131926e-01	ci right 1.169732e-01	k: 12658	n:110000
EPHA6   110000 perm   39 sec   (2813 perm/sec)   p_kst 1.150727e-01   p_cons 1.745455e-03   p_joint 2.545455e-03

Joint ci ratio: 1.979189e-01	ci left: 2.935862e-03	ci right 3.588508e-03	k: 390	n:120000
Cons ci ratio: 2.683544e-01	ci left: 1.537013e-03	ci right 2.020908e-03	k: 212	n:120000
KS ci ratio: 3.135463e-02	ci left: 1.134319e-01	ci right 1.170534e-01	k: 13828	n:120000
EPHA6   120000 perm   43 sec   (2792 perm/sec)   p_kst 1.152333e-01   p_cons 1.766667e-03   p_joint 3.250000e-03

Joint ci ratio: 2.002690e-01	ci left: 2.644206e-03	ci right 3.239847e-03	k: 381	n:130000
Cons ci ratio: 2.593796e-01	ci left: 1.526534e-03	ci right 1.988453e-03	k: 227	n:130000
KS ci ratio: 3.007853e-02	ci left: 1.138131e-01	ci right 1.172963e-01	k: 15021	n:130000
EPHA6   130000 perm   47 sec   (2773 perm/sec)   p_kst 1.155462e-01   p_cons 1.746154e-03   p_joint 2.930769e-03

Joint ci ratio: 2.035209e-01	ci left: 2.373919e-03	ci right 2.918434e-03	k: 369	n:140000
Cons ci ratio: 2.502195e-01	ci left: 1.531173e-03	ci right 1.975585e-03	k: 244	n:140000
KS ci ratio: 2.898596e-02	ci left: 1.138656e-01	ci right 1.172217e-01	k: 16175	n:140000
EPHA6   140000 perm   51 sec   (2752 perm/sec)   p_kst 1.155357e-01   p_cons 1.742857e-03   p_joint 2.635714e-03

Joint ci ratio: 1.435509e-01	ci left: 4.591458e-03	ci right 5.307883e-03	k: 741	n:150000
Cons ci ratio: 2.401366e-01	ci left: 1.560500e-03	ci right 1.992457e-03	k: 265	n:150000
KS ci ratio: 2.799072e-02	ci left: 1.140125e-01	ci right 1.172557e-01	k: 17344	n:150000
EPHA6   150000 perm   55 sec   (2725 perm/sec)   p_kst 1.156267e-01   p_cons 1.766667e-03   p_joint 4.940000e-03

Joint ci ratio: 1.433792e-01	ci left: 4.316499e-03	ci right 4.989144e-03	k: 743	n:160000
Cons ci ratio: 2.295847e-01	ci left: 1.610033e-03	ci right 2.033346e-03	k: 290	n:160000
KS ci ratio: 2.712373e-02	ci left: 1.139004e-01	ci right 1.170385e-01	k: 18474	n:160000
EPHA6   160000 perm   59 sec   (2693 perm/sec)   p_kst 1.154625e-01   p_cons 1.812500e-03   p_joint 4.643750e-03

Joint ci ratio: 1.512570e-01	ci left: 3.637563e-03	ci right 4.238372e-03	k: 668	n:170000
Cons ci ratio: 2.227976e-01	ci left: 1.615210e-03	ci right 2.025608e-03	k: 308	n:170000
KS ci ratio: 2.628339e-02	ci left: 1.141831e-01	ci right 1.172300e-01	k: 19669	n:170000
EPHA6   170000 perm   64 sec   (2669 perm/sec)   p_kst 1.157000e-01   p_cons 1.811765e-03   p_joint 3.929412e-03

Joint ci ratio: 1.596325e-01	ci left: 3.072310e-03	ci right 3.610549e-03	k: 600	n:180000
Cons ci ratio: 2.142932e-01	ci left: 1.656769e-03	ci right 2.059546e-03	k: 333	n:180000
KS ci ratio: 2.551797e-02	ci left: 1.144246e-01	ci right 1.173877e-01	k: 20862	n:180000
EPHA6   180000 perm   68 sec   (2645 perm/sec)   p_kst 1.159000e-01   p_cons 1.850000e-03   p_joint 3.333333e-03

Joint ci ratio: 1.309425e-01	ci left: 4.387225e-03	ci right 5.006983e-03	k: 891	n:190000
Cons ci ratio: 2.081509e-01	ci left: 1.669268e-03	ci right 2.061970e-03	k: 353	n:190000
KS ci ratio: 2.443504e-02	ci left: 1.178352e-01	ci right 1.207554e-01	k: 22665	n:190000
EPHA6   190000 perm   73 sec   (2621 perm/sec)   p_kst 1.192895e-01   p_cons 1.857895e-03   p_joint 4.689474e-03

Joint ci ratio: 1.384890e-01	ci left: 3.713601e-03	ci right 4.270926e-03	k: 797	n:200000
Cons ci ratio: 2.030529e-01	ci left: 1.671171e-03	ci right 2.053498e-03	k: 371	n:200000
KS ci ratio: 2.382992e-02	ci left: 1.177531e-01	ci right 1.205979e-01	k: 23834	n:200000
EPHA6   200000 perm   77 sec   (2596 perm/sec)   p_kst 1.191700e-01   p_cons 1.855000e-03   p_joint 3.985000e-03

Joint ci ratio: 1.385023e-01	ci left: 3.536741e-03	ci right 4.067577e-03	k: 797	n:210000
Cons ci ratio: 1.995980e-01	ci left: 1.650374e-03	ci right 2.020736e-03	k: 384	n:210000
KS ci ratio: 2.323915e-02	ci left: 1.179355e-01	ci right 1.207131e-01	k: 25057	n:210000
EPHA6   210000 perm   82 sec   (2574 perm/sec)   p_kst 1.193190e-01   p_cons 1.828571e-03   p_joint 3.795238e-03

Joint ci ratio: 1.341946e-01	ci left: 3.604290e-03	ci right 4.127097e-03	k: 849	n:220000
Cons ci ratio: 1.958213e-01	ci left: 1.640163e-03	ci right 2.000439e-03	k: 399	n:220000
KS ci ratio: 2.270791e-02	ci left: 1.179392e-01	ci right 1.206526e-01	k: 26244	n:220000
EPHA6   220000 perm   86 sec   (2550 perm/sec)   p_kst 1.192909e-01   p_cons 1.813636e-03   p_joint 3.859091e-03

Joint ci ratio: 1.212201e-01	ci left: 4.251634e-03	ci right 4.804445e-03	k: 1040	n:230000
Cons ci ratio: 1.614510e-01	ci left: 2.350093e-03	ci right 2.766948e-03	k: 587	n:230000
KS ci ratio: 2.223268e-02	ci left: 1.177443e-01	ci right 1.203958e-01	k: 27385	n:230000
EPHA6   230000 perm   91 sec   (2526 perm/sec)   p_kst 1.190652e-01   p_cons 2.552174e-03   p_joint 4.521739e-03

Joint ci ratio: 1.125946e-01	ci left: 4.741969e-03	ci right 5.311753e-03	k: 1205	n:240000
Cons ci ratio: 1.589062e-01	ci left: 2.328164e-03	ci right 2.733999e-03	k: 606	n:240000
KS ci ratio: 2.156533e-02	ci left: 1.197060e-01	ci right 1.223198e-01	k: 29042	n:240000
EPHA6   240000 perm   96 sec   (2502 perm/sec)   p_kst 1.210083e-01   p_cons 2.525000e-03   p_joint 5.020833e-03

Joint ci ratio: 1.112243e-01	ci left: 4.668921e-03	ci right 5.222652e-03	k: 1235	n:250000
Cons ci ratio: 1.824038e-01	ci left: 1.675808e-03	ci right 2.015907e-03	k: 460	n:250000
KS ci ratio: 2.111538e-02	ci left: 1.198753e-01	ci right 1.224375e-01	k: 30288	n:250000
EPHA6   250000 perm   101 sec   (2479 perm/sec)   p_kst 1.211520e-01   p_cons 1.840000e-03   p_joint 4.940000e-03

Joint ci ratio: 1.228013e-01	ci left: 3.664044e-03	ci right 4.147118e-03	k: 1014	n:260000
Cons ci ratio: 1.789440e-01	ci left: 1.677454e-03	ci right 2.010731e-03	k: 478	n:260000
KS ci ratio: 2.073176e-02	ci left: 1.196300e-01	ci right 1.221400e-01	k: 31429	n:260000
EPHA6   260000 perm   106 sec   (2455 perm/sec)   p_kst 1.208808e-01   p_cons 1.838462e-03   p_joint 3.900000e-03

Joint ci ratio: 1.229928e-01	ci left: 3.517553e-03	ci right 3.982088e-03	k: 1011	n:270000
Cons ci ratio: 1.762074e-01	ci left: 1.668412e-03	ci right 1.994282e-03	k: 493	n:270000
KS ci ratio: 2.034948e-02	ci left: 1.195988e-01	ci right 1.220612e-01	k: 32623	n:270000
EPHA6   270000 perm   111 sec   (2431 perm/sec)   p_kst 1.208259e-01   p_cons 1.825926e-03   p_joint 3.744444e-03

Joint ci ratio: 1.025706e-01	ci left: 4.923022e-03	ci right 5.458727e-03	k: 1452	n:280000
Cons ci ratio: 1.741074e-01	ci left: 1.649802e-03	ci right 1.967794e-03	k: 505	n:280000
KS ci ratio: 2.068351e-02	ci left: 1.125193e-01	ci right 1.148744e-01	k: 31834	n:280000
EPHA6   280000 perm   116 sec   (2409 perm/sec)   p_kst 1.136929e-01   p_cons 1.803571e-03   p_joint 5.185714e-03

Joint ci ratio: 1.122239e-01	ci left: 3.954460e-03	ci right 4.427947e-03	k: 1214	n:290000
Cons ci ratio: 1.715837e-01	ci left: 1.642399e-03	ci right 1.953900e-03	k: 520	n:290000
KS ci ratio: 2.031924e-02	ci left: 1.125845e-01	ci right 1.148991e-01	k: 32984	n:290000
EPHA6   290000 perm   122 sec   (2387 perm/sec)   p_kst 1.137379e-01   p_cons 1.793103e-03   p_joint 4.186207e-03

Joint ci ratio: 9.924604e-02	ci left: 4.916493e-03	ci right 5.433137e-03	k: 1551	n:300000
Cons ci ratio: 1.688513e-01	ci left: 1.641905e-03	ci right 1.947848e-03	k: 537	n:300000
KS ci ratio: 2.001527e-02	ci left: 1.122276e-01	ci right 1.144999e-01	k: 34008	n:300000
EPHA6   300000 perm   127 sec   (2364 perm/sec)   p_kst 1.133600e-01   p_cons 1.790000e-03   p_joint 5.170000e-03

Joint ci ratio: 9.783886e-02	ci left: 4.899478e-03	ci right 5.406615e-03	k: 1596	n:310000
Cons ci ratio: 1.663957e-01	ci left: 1.638387e-03	ci right 1.938791e-03	k: 553	n:310000
KS ci ratio: 1.969000e-02	ci left: 1.122441e-01	ci right 1.144793e-01	k: 35141	n:310000
EPHA6   310000 perm   132 sec   (2342 perm/sec)   p_kst 1.133581e-01   p_cons 1.783871e-03   p_joint 5.148387e-03

Joint ci ratio: 9.607902e-02	ci left: 4.926277e-03	ci right 5.426499e-03	k: 1655	n:320000
Cons ci ratio: 1.634706e-01	ci left: 1.647109e-03	ci right 1.943280e-03	k: 573	n:320000
KS ci ratio: 1.937316e-02	ci left: 1.123313e-01	ci right 1.145319e-01	k: 36297	n:320000
EPHA6   320000 perm   138 sec   (2321 perm/sec)   p_kst 1.134281e-01   p_cons 1.790625e-03   p_joint 5.171875e-03

Joint ci ratio: 9.491284e-02	ci left: 4.898267e-03	ci right 5.389272e-03	k: 1696	n:330000
Cons ci ratio: 1.606945e-01	ci left: 1.655345e-03	ci right 1.947455e-03	k: 593	n:330000
KS ci ratio: 1.908062e-02	ci left: 1.123140e-01	ci right 1.144807e-01	k: 37420	n:330000
EPHA6   330000 perm   144 sec   (2299 perm/sec)   p_kst 1.133939e-01   p_cons 1.796970e-03   p_joint 5.139394e-03

Joint ci ratio: 9.710053e-02	ci left: 4.538867e-03	ci right 5.004929e-03	k: 1621	n:340000
Cons ci ratio: 1.368944e-01	ci left: 2.241152e-03	ci right 2.573302e-03	k: 817	n:340000
KS ci ratio: 1.877431e-02	ci left: 1.125821e-01	ci right 1.147186e-01	k: 38640	n:340000
EPHA6   340000 perm   149 sec   (2280 perm/sec)   p_kst 1.136471e-01   p_cons 2.402941e-03   p_joint 4.767647e-03

Joint ci ratio: 9.648169e-02	ci left: 4.467725e-03	ci right 4.923392e-03	k: 1642	n:350000
Cons ci ratio: 1.350097e-01	ci left: 2.240598e-03	ci right 2.567727e-03	k: 840	n:350000
KS ci ratio: 1.850403e-02	ci left: 1.125989e-01	ci right 1.147047e-01	k: 39777	n:350000
EPHA6   350000 perm   155 sec   (2261 perm/sec)   p_kst 1.136486e-01   p_cons 2.400000e-03   p_joint 4.691429e-03

Joint ci ratio: 9.631151e-02	ci left: 4.359875e-03	ci right 4.803713e-03	k: 1648	n:360000
Cons ci ratio: 1.335888e-01	ci left: 2.226678e-03	ci right 2.548082e-03	k: 858	n:360000
KS ci ratio: 1.823605e-02	ci left: 1.127146e-01	ci right 1.147917e-01	k: 40950	n:360000
EPHA6   360000 perm   161 sec   (2242 perm/sec)   p_kst 1.137500e-01   p_cons 2.383333e-03   p_joint 4.577778e-03

Joint ci ratio: 9.510842e-02	ci left: 4.352836e-03	ci right 4.790114e-03	k: 1690	n:370000
Cons ci ratio: 1.321364e-01	ci left: 2.216141e-03	ci right 2.532273e-03	k: 877	n:370000
KS ci ratio: 1.799602e-02	ci left: 1.126384e-01	ci right 1.146865e-01	k: 42054	n:370000
EPHA6   370000 perm   166 sec   (2223 perm/sec)   p_kst 1.136595e-01   p_cons 2.370270e-03   p_joint 4.567568e-03

Joint ci ratio: 9.414051e-02	ci left: 4.328210e-03	ci right 4.758346e-03	k: 1725	n:380000
Cons ci ratio: 1.304390e-01	ci left: 2.216360e-03	ci right 2.528148e-03	k: 900	n:380000
KS ci ratio: 1.775177e-02	ci left: 1.127185e-01	ci right 1.147400e-01	k: 43216	n:380000
EPHA6   380000 perm   172 sec   (2205 perm/sec)   p_kst 1.137263e-01   p_cons 2.368421e-03   p_joint 4.539474e-03

Joint ci ratio: 9.481041e-02	ci left: 4.157129e-03	ci right 4.573365e-03	k: 1701	n:390000
Cons ci ratio: 1.290156e-01	ci left: 2.209148e-03	ci right 2.516269e-03	k: 920	n:390000
KS ci ratio: 1.752901e-02	ci left: 1.126593e-01	ci right 1.146541e-01	k: 44325	n:390000
EPHA6   390000 perm   178 sec   (2187 perm/sec)   p_kst 1.136538e-01   p_cons 2.358974e-03   p_joint 4.361538e-03

Joint ci ratio: 9.428852e-02	ci left: 4.099572e-03	ci right 4.507660e-03	k: 1720	n:400000
Cons ci ratio: 1.275699e-01	ci left: 2.204734e-03	ci right 2.507547e-03	k: 941	n:400000
KS ci ratio: 1.729940e-02	ci left: 1.127776e-01	ci right 1.147480e-01	k: 45504	n:400000
EPHA6   400000 perm   184 sec   (2170 perm/sec)   p_kst 1.137600e-01   p_cons 2.352500e-03   p_joint 4.300000e-03

Joint ci ratio: 9.372099e-02	ci left: 4.049593e-03	ci right 4.450146e-03	k: 1741	n:410000
Cons ci ratio: 1.266338e-01	ci left: 2.184019e-03	ci right 2.481621e-03	k: 955	n:410000
KS ci ratio: 1.708231e-02	ci left: 1.128465e-01	ci right 1.147931e-01	k: 46665	n:410000
EPHA6   410000 perm   191 sec   (2152 perm/sec)   p_kst 1.138171e-01   p_cons 2.329268e-03   p_joint 4.246341e-03

Joint ci ratio: 9.359098e-02	ci left: 3.964792e-03	ci right 4.356383e-03	k: 1746	n:420000
Cons ci ratio: 1.248184e-01	ci left: 2.196589e-03	ci right 2.491296e-03	k: 983	n:420000
KS ci ratio: 1.687617e-02	ci left: 1.128766e-01	ci right 1.148001e-01	k: 47811	n:420000
EPHA6   420000 perm   197 sec   (2135 perm/sec)   p_kst 1.138357e-01   p_cons 2.340476e-03   p_joint 4.157143e-03

Joint ci ratio: 9.474595e-02	ci left: 3.777196e-03	ci right 4.155118e-03	k: 1704	n:430000
Cons ci ratio: 1.230180e-01	ci left: 2.210858e-03	ci right 2.502889e-03	k: 1012	n:430000
KS ci ratio: 1.667232e-02	ci left: 1.129658e-01	ci right 1.148673e-01	k: 48983	n:430000
EPHA6   430000 perm   203 sec   (2117 perm/sec)   p_kst 1.139140e-01   p_cons 2.353488e-03   p_joint 3.962791e-03

Joint ci ratio: 8.235565e-02	ci left: 4.911690e-03	ci right 5.335776e-03	k: 2253	n:440000
Cons ci ratio: 1.214687e-01	ci left: 2.217896e-03	ci right 2.506901e-03	k: 1038	n:440000
KS ci ratio: 1.648663e-02	ci left: 1.129174e-01	ci right 1.147968e-01	k: 50096	n:440000
EPHA6   440000 perm   209 sec   (2101 perm/sec)   p_kst 1.138545e-01   p_cons 2.359091e-03   p_joint 5.120455e-03

Joint ci ratio: 8.183294e-02	ci left: 4.865658e-03	ci right 5.282976e-03	k: 2282	n:450000
Cons ci ratio: 1.202030e-01	ci left: 2.216020e-03	ci right 2.501559e-03	k: 1060	n:450000
KS ci ratio: 1.629964e-02	ci left: 1.129621e-01	ci right 1.148207e-01	k: 51250	n:450000
EPHA6   450000 perm   216 sec   (2085 perm/sec)   p_kst 1.138889e-01   p_cons 2.355556e-03   p_joint 5.071111e-03

Joint ci ratio: 8.050172e-02	ci left: 4.921752e-03	ci right 5.336693e-03	k: 2358	n:460000
Cons ci ratio: 1.185925e-01	ci left: 2.229007e-03	ci right 2.512101e-03	k: 1089	n:460000
KS ci ratio: 1.611957e-02	ci left: 1.129963e-01	ci right 1.148347e-01	k: 52400	n:460000
EPHA6   460000 perm   222 sec   (2068 perm/sec)   p_kst 1.139130e-01   p_cons 2.367391e-03   p_joint 5.126087e-03

Joint ci ratio: 8.079927e-02	ci left: 4.781579e-03	ci right 5.186262e-03	k: 2341	n:470000
Cons ci ratio: 1.174137e-01	ci left: 2.227008e-03	ci right 2.506842e-03	k: 1111	n:470000
KS ci ratio: 1.593896e-02	ci left: 1.131097e-01	ci right 1.149291e-01	k: 53588	n:470000
EPHA6   470000 perm   229 sec   (2052 perm/sec)   p_kst 1.140170e-01   p_cons 2.363830e-03   p_joint 4.980851e-03

Joint ci ratio: 8.108228e-02	ci left: 4.649292e-03	ci right 5.044221e-03	k: 2325	n:480000
Cons ci ratio: 1.163723e-01	ci left: 2.221060e-03	ci right 2.497501e-03	k: 1131	n:480000
KS ci ratio: 1.577339e-02	ci left: 1.131022e-01	ci right 1.149024e-01	k: 54720	n:480000
EPHA6   480000 perm   236 sec   (2036 perm/sec)   p_kst 1.140000e-01   p_cons 2.356250e-03   p_joint 4.843750e-03

Joint ci ratio: 8.029242e-02	ci left: 4.646391e-03	ci right 5.037050e-03	k: 2371	n:490000
Cons ci ratio: 1.152079e-01	ci left: 2.221312e-03	ci right 2.494829e-03	k: 1154	n:490000
KS ci ratio: 1.561256e-02	ci left: 1.130992e-01	ci right 1.148809e-01	k: 55854	n:490000
EPHA6   490000 perm   243 sec   (2020 perm/sec)   p_kst 1.139878e-01   p_cons 2.355102e-03   p_joint 4.838776e-03

Joint ci ratio: 8.031334e-02	ci left: 4.551495e-03	ci right 4.934279e-03	k: 2370	n:500000
Cons ci ratio: 1.142723e-01	ci left: 2.213795e-03	ci right 2.484024e-03	k: 1173	n:500000
KS ci ratio: 1.546528e-02	ci left: 1.129828e-01	ci right 1.147457e-01	k: 56931	n:500000
EPHA6   500000 perm   249 sec   (2006 perm/sec)   p_kst 1.138620e-01   p_cons 2.346000e-03   p_joint 4.740000e-03

Joint ci ratio: 7.966152e-02	ci left: 4.537189e-03	ci right 4.915530e-03	k: 2409	n:510000
Cons ci ratio: 1.134069e-01	ci left: 2.204675e-03	ci right 2.471617e-03	k: 1191	n:510000
KS ci ratio: 1.531702e-02	ci left: 1.129375e-01	ci right 1.146826e-01	k: 58042	n:510000
EPHA6   510000 perm   256 sec   (1990 perm/sec)   p_kst 1.138078e-01   p_cons 2.335294e-03   p_joint 4.723529e-03

Joint ci ratio: 7.917160e-02	ci left: 4.506479e-03	ci right 4.879841e-03	k: 2439	n:520000
Cons ci ratio: 1.120054e-01	ci left: 2.218345e-03	ci right 2.483403e-03	k: 1221	n:520000
KS ci ratio: 1.516398e-02	ci left: 1.130128e-01	ci right 1.147415e-01	k: 59215	n:520000
EPHA6   520000 perm   263 sec   (1976 perm/sec)   p_kst 1.138750e-01   p_cons 2.348077e-03   p_joint 4.690385e-03

Joint ci ratio: 7.862666e-02	ci left: 4.484335e-03	ci right 4.853188e-03	k: 2473	n:530000
Cons ci ratio: 1.110108e-01	ci left: 2.216841e-03	ci right 2.479213e-03	k: 1243	n:530000
KS ci ratio: 1.501642e-02	ci left: 1.130722e-01	ci right 1.147848e-01	k: 60381	n:530000
EPHA6   530000 perm   270 sec   (1961 perm/sec)   p_kst 1.139264e-01   p_cons 2.345283e-03   p_joint 4.666038e-03

Joint ci ratio: 8.226674e-02	ci left: 4.014738e-03	ci right 4.360985e-03	k: 2260	n:540000
Cons ci ratio: 1.103484e-01	ci left: 2.202796e-03	ci right 2.461849e-03	k: 1258	n:540000
KS ci ratio: 1.487445e-02	ci left: 1.131110e-01	ci right 1.148079e-01	k: 61537	n:540000
EPHA6   540000 perm   278 sec   (1946 perm/sec)   p_kst 1.139574e-01   p_cons 2.329630e-03   p_joint 4.185185e-03

Joint ci ratio: 8.174514e-02	ci left: 3.993387e-03	ci right 4.335505e-03	k: 2289	n:550000
Cons ci ratio: 1.093968e-01	ci left: 2.201646e-03	ci right 2.458187e-03	k: 1280	n:550000
KS ci ratio: 1.473325e-02	ci left: 1.131920e-01	ci right 1.148739e-01	k: 62717	n:550000
EPHA6   550000 perm   285 sec   (1931 perm/sec)   p_kst 1.140309e-01   p_cons 2.327273e-03   p_joint 4.161818e-03

Joint ci ratio: 8.139207e-02	ci left: 3.957059e-03	ci right 4.294531e-03	k: 2309	n:560000
Cons ci ratio: 1.086368e-01	ci left: 2.193597e-03	ci right 2.447310e-03	k: 1298	n:560000
KS ci ratio: 1.459561e-02	ci left: 1.132755e-01	ci right 1.149428e-01	k: 63900	n:560000
EPHA6   560000 perm   292 sec   (1917 perm/sec)   p_kst 1.141071e-01   p_cons 2.317857e-03   p_joint 4.123214e-03

Joint ci ratio: 8.085210e-02	ci left: 3.940918e-03	ci right 4.274679e-03	k: 2340	n:570000
Cons ci ratio: 1.077694e-01	ci left: 2.190957e-03	ci right 2.442214e-03	k: 1319	n:570000
KS ci ratio: 1.446162e-02	ci left: 1.133579e-01	ci right 1.150109e-01	k: 65084	n:570000
EPHA6   570000 perm   300 sec   (1902 perm/sec)   p_kst 1.141825e-01   p_cons 2.314035e-03   p_joint 4.105263e-03

Joint ci ratio: 8.088968e-02	ci left: 3.869587e-03	ci right 4.197466e-03	k: 2338	n:580000
Cons ci ratio: 1.068027e-01	ci left: 2.193451e-03	ci right 2.442596e-03	k: 1343	n:580000
KS ci ratio: 1.434104e-02	ci left: 1.133000e-01	ci right 1.149383e-01	k: 66188	n:580000
EPHA6   580000 perm   307 sec   (1888 perm/sec)   p_kst 1.141172e-01   p_cons 2.315517e-03   p_joint 4.031034e-03

Joint ci ratio: 8.015606e-02	ci left: 3.875415e-03	ci right 4.200671e-03	k: 2381	n:590000
Cons ci ratio: 1.060951e-01	ci left: 2.185970e-03	ci right 2.432517e-03	k: 1361	n:590000
KS ci ratio: 1.422521e-02	ci left: 1.132188e-01	ci right 1.148426e-01	k: 67277	n:590000
EPHA6   590000 perm   315 sec   (1874 perm/sec)   p_kst 1.140288e-01   p_cons 2.306780e-03   p_joint 4.035593e-03

Joint ci ratio: 7.952440e-02	ci left: 3.872894e-03	ci right 4.195258e-03	k: 2419	n:600000
Cons ci ratio: 1.054780e-01	ci left: 2.175498e-03	ci right 2.419348e-03	k: 1377	n:600000
KS ci ratio: 1.410888e-02	ci left: 1.131869e-01	ci right 1.147968e-01	k: 68394	n:600000
EPHA6   600000 perm   322 sec   (1861 perm/sec)   p_kst 1.139900e-01   p_cons 2.295000e-03   p_joint 4.031667e-03

Joint ci ratio: 7.892357e-02	ci left: 3.868857e-03	ci right 4.188340e-03	k: 2456	n:610000
Cons ci ratio: 1.048715e-01	ci left: 2.165373e-03	ci right 2.406606e-03	k: 1393	n:610000
KS ci ratio: 1.399331e-02	ci left: 1.131855e-01	ci right 1.147821e-01	k: 69529	n:610000
EPHA6   610000 perm   330 sec   (1848 perm/sec)   p_kst 1.139820e-01   p_cons 2.283607e-03   p_joint 4.026230e-03

Joint ci ratio: 7.858967e-02	ci left: 3.839658e-03	ci right 4.155327e-03	k: 2477	n:620000
Cons ci ratio: 1.041274e-01	ci left: 2.161862e-03	ci right 2.400891e-03	k: 1413	n:620000
KS ci ratio: 1.388265e-02	ci left: 1.131536e-01	ci right 1.147371e-01	k: 70645	n:620000
EPHA6   620000 perm   338 sec   (1836 perm/sec)   p_kst 1.139435e-01   p_cons 2.279032e-03   p_joint 3.995161e-03

Joint ci ratio: 7.936763e-02	ci left: 3.704015e-03	ci right 4.011686e-03	k: 2429	n:630000
Cons ci ratio: 1.035438e-01	ci left: 2.152283e-03	ci right 2.388839e-03	k: 1429	n:630000
KS ci ratio: 1.377749e-02	ci left: 1.130801e-01	ci right 1.146504e-01	k: 71734	n:630000
EPHA6   630000 perm   346 sec   (1822 perm/sec)   p_kst 1.138635e-01   p_cons 2.268254e-03   p_joint 3.855556e-03

Joint ci ratio: 7.914151e-02	ci left: 3.667579e-03	ci right 3.971315e-03	k: 2443	n:640000
Cons ci ratio: 1.030772e-01	ci left: 2.138441e-03	ci right 2.372351e-03	k: 1442	n:640000
KS ci ratio: 1.367374e-02	ci left: 1.130229e-01	ci right 1.145806e-01	k: 72832	n:640000
EPHA6   640000 perm   354 sec   (1809 perm/sec)   p_kst 1.138000e-01   p_cons 2.253125e-03   p_joint 3.817187e-03

Joint ci ratio: 7.511609e-02	ci left: 4.015541e-03	ci right 4.330442e-03	k: 2711	n:650000
Cons ci ratio: 1.020215e-01	ci left: 2.150513e-03	ci right 2.383190e-03	k: 1472	n:650000
KS ci ratio: 1.356980e-02	ci left: 1.130044e-01	ci right 1.145498e-01	k: 73954	n:650000
EPHA6   650000 perm   362 sec   (1796 perm/sec)   p_kst 1.137754e-01   p_cons 2.264615e-03   p_joint 4.170769e-03

Joint ci ratio: 7.593820e-02	ci left: 3.868469e-03	ci right 4.175303e-03	k: 2653	n:660000
Cons ci ratio: 1.014383e-01	ci left: 2.143031e-03	ci right 2.373494e-03	k: 1489	n:660000
KS ci ratio: 1.346204e-02	ci left: 1.130786e-01	ci right 1.146127e-01	k: 75137	n:660000
EPHA6   660000 perm   370 sec   (1784 perm/sec)   p_kst 1.138439e-01   p_cons 2.256061e-03   p_joint 4.019697e-03

Joint ci ratio: 7.537235e-02	ci left: 3.869303e-03	ci right 4.173816e-03	k: 2693	n:670000
Cons ci ratio: 1.005977e-01	ci left: 2.147416e-03	ci right 2.376324e-03	k: 1514	n:670000
KS ci ratio: 1.336421e-02	ci left: 1.130390e-01	ci right 1.145613e-01	k: 76245	n:670000
EPHA6   670000 perm   378 sec   (1771 perm/sec)   p_kst 1.137985e-01   p_cons 2.259701e-03   p_joint 4.019403e-03

Joint ci ratio: 7.476407e-02	ci left: 3.875893e-03	ci right 4.178356e-03	k: 2737	n:680000
Cons ci ratio: 9.994034e-02	ci left: 2.144511e-03	ci right 2.371528e-03	k: 1534	n:680000
KS ci ratio: 1.326548e-02	ci left: 1.130461e-01	ci right 1.145572e-01	k: 77384	n:680000
EPHA6   680000 perm   386 sec   (1760 perm/sec)   p_kst 1.138000e-01   p_cons 2.255882e-03   p_joint 4.025000e-03

Outputting figure to mutsig2_images.part000000000057/EPHA6.33_3582_680000_0.1138_0.0022559_0.004025.png
                gene_name: EPHA6
               theta_stop: 0.100 
                    nperm: 680000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0023 
      ci_cons_bounds_left: 0.0021 
     ci_cons_bounds_right: 0.0024 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 1 percent done.
EPHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
Cons ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
KS ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
EPHB1   10000 perm   3 sec   (3901 perm/sec)   p_kst 5.229000e-01   p_cons 5.928000e-01   p_joint 6.483000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB1.30_3019_10000_0.5229_0.5928_0.6483.png
                gene_name: EPHB1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 3 percent done.
EPHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
Cons ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
KS ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
EPHA5   10000 perm   3 sec   (3939 perm/sec)   p_kst 5.688000e-01   p_cons 7.840000e-02   p_joint 2.073000e-01

Joint ci ratio: 5.330378e-02	ci left: 2.071447e-01	ci right 2.185389e-01	k: 4256	n:20000
Cons ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
KS ci ratio: 2.400740e-02	ci left: 5.644564e-01	ci right 5.782228e-01	k: 11427	n:20000
EPHA5   20000 perm   6 sec   (3606 perm/sec)   p_kst 5.713500e-01   p_cons 8.795000e-02   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA5.26_3186_20000_0.57135_0.08795_0.2128.png
                gene_name: EPHA5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 4 percent done.
EPHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
Cons ci ratio: 3.026420e-02	ci left: 6.169333e-01	ci right 6.359930e-01	k: 6265	n:10000
KS ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
EPHA3   10000 perm   2 sec   (4038 perm/sec)   p_kst 5.534000e-01   p_cons 6.265000e-01   p_joint 6.482000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA3.25_3046_10000_0.5534_0.6265_0.6482.png
                gene_name: EPHA3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 6 percent done.
EPHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
EPHA7   10000 perm   2 sec   (4219 perm/sec)   p_kst 4.258000e-01   p_cons 1.264000e-01   p_joint 2.108000e-01

Joint ci ratio: 5.385059e-02	ci left: 2.037786e-01	ci right 2.151060e-01	k: 4188	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 3.200520e-02	ci left: 4.216774e-01	ci right 4.354434e-01	k: 8571	n:20000
EPHA7   20000 perm   5 sec   (3866 perm/sec)   p_kst 4.285500e-01   p_cons 1.156000e-01   p_joint 2.094000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA7.24_3065_20000_0.42855_0.1156_0.2094.png
                gene_name: EPHA7
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 7 percent done.
EPHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
KS ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
EPHB6   10000 perm   2 sec   (4029 perm/sec)   p_kst 4.590000e-02   p_cons 6.661000e-01   p_joint 1.196000e-01

Joint ci ratio: 7.674209e-02	ci left: 1.109540e-01	ci right 1.198582e-01	k: 2307	n:20000
Cons ci ratio: 1.959780e-02	ci left: 6.601181e-01	ci right 6.732334e-01	k: 13334	n:20000
KS ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
EPHB6   20000 perm   5 sec   (3721 perm/sec)   p_kst 4.965000e-02   p_cons 6.667000e-01   p_joint 1.153500e-01

Joint ci ratio: 6.854473e-02	ci left: 9.492057e-02	ci right 1.016908e-01	k: 2948	n:30000
Cons ci ratio: 1.546812e-02	ci left: 6.762944e-01	ci right 6.868704e-01	k: 20448	n:30000
KS ci ratio: 9.927831e-02	ci left: 4.694235e-02	ci right 5.187871e-02	k: 1481	n:30000
EPHB6   30000 perm   8 sec   (3588 perm/sec)   p_kst 4.936667e-02   p_cons 6.816000e-01   p_joint 9.826667e-02

Outputting figure to mutsig2_images.part000000000057/EPHB6.24_3130_30000_0.049367_0.6816_0.098267.png
                gene_name: EPHB6
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 8 percent done.
ERBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
ERBB4   10000 perm   2 sec   (4079 perm/sec)   p_kst 4.019000e-01   p_cons 3.361000e-01   p_joint 4.093000e-01

Outputting figure to mutsig2_images.part000000000057/ERBB4.21_4039_10000_0.4019_0.3361_0.4093.png
                gene_name: ERBB4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 10 percent done.
EPB41L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
Cons ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
KS ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
EPB41L3   10000 perm   2 sec   (4518 perm/sec)   p_kst 6.801000e-01   p_cons 4.231000e-01   p_joint 6.832000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L3.17_3348_10000_0.6801_0.4231_0.6832.png
                gene_name: EPB41L3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 11 percent done.
EP400
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
KS ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
EP400   10000 perm   3 sec   (3136 perm/sec)   p_kst 1.129000e-01   p_cons 5.578000e-01   p_joint 2.692000e-01

Joint ci ratio: 5.650691e-02	ci left: 1.884406e-01	ci right 1.994485e-01	k: 3878	n:20000
Cons ci ratio: 2.357159e-02	ci left: 5.734242e-01	ci right 5.871525e-01	k: 11606	n:20000
KS ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
EP400   20000 perm   7 sec   (2913 perm/sec)   p_kst 1.142000e-01   p_cons 5.803000e-01   p_joint 1.939000e-01

Outputting figure to mutsig2_images.part000000000057/EP400.14_9577_20000_0.1142_0.5803_0.1939.png
                gene_name: EP400
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 13 percent done.
EPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
Cons ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
EPRS   10000 perm   2 sec   (4259 perm/sec)   p_kst 6.210000e-02   p_cons 5.472000e-01   p_joint 1.415000e-01

Joint ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
Cons ci ratio: 2.496208e-02	ci left: 5.452261e-01	ci right 5.590587e-01	k: 11043	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
EPRS   20000 perm   5 sec   (3899 perm/sec)   p_kst 6.120000e-02   p_cons 5.521500e-01   p_joint 1.114000e-01

Joint ci ratio: 6.207372e-02	ci left: 1.136793e-01	ci right 1.209950e-01	k: 3519	n:30000
Cons ci ratio: 2.025924e-02	ci left: 5.494881e-01	ci right 5.607679e-01	k: 16654	n:30000
KS ci ratio: 8.782760e-02	ci left: 5.952549e-02	ci right 6.502633e-02	k: 1867	n:30000
EPRS   30000 perm   8 sec   (3750 perm/sec)   p_kst 6.223333e-02   p_cons 5.551333e-01   p_joint 1.173000e-01

Outputting figure to mutsig2_images.part000000000057/EPRS.13_4667_30000_0.062233_0.55513_0.1173.png
                gene_name: EPRS
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
ENOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
Cons ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
ENOX1   10000 perm   2 sec   (4918 perm/sec)   p_kst 9.760000e-02   p_cons 4.829000e-01   p_joint 1.382000e-01

Joint ci ratio: 5.670648e-02	ci left: 1.873526e-01	ci right 1.983368e-01	k: 3856	n:20000
Cons ci ratio: 2.866674e-02	ci left: 4.762023e-01	ci right 4.901026e-01	k: 9663	n:20000
KS ci ratio: 8.421077e-02	ci left: 9.361882e-02	ci right 1.018985e-01	k: 1954	n:20000
ENOX1   20000 perm   5 sec   (4431 perm/sec)   p_kst 9.770000e-02   p_cons 4.831500e-01   p_joint 1.928000e-01

Outputting figure to mutsig2_images.part000000000057/ENOX1.12_1988_20000_0.0977_0.48315_0.1928.png
                gene_name: ENOX1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 15 percent done.
ENPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
ENPP3   10000 perm   2 sec   (4725 perm/sec)   p_kst 8.322000e-01   p_cons 3.515000e-01   p_joint 7.575000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP3.12_2728_10000_0.8322_0.3515_0.7575.png
                gene_name: ENPP3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 17 percent done.
ENPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
ENPP2   10000 perm   2 sec   (4970 perm/sec)   p_kst 1.502000e-01   p_cons 7.137000e-01   p_joint 2.230000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP2.10_2931_10000_0.1502_0.7137_0.223.png
                gene_name: ENPP2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
EPHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
KS ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
EPHA1   10000 perm   2 sec   (4688 perm/sec)   p_kst 5.854000e-01   p_cons 4.610000e-02   p_joint 2.117000e-01

Joint ci ratio: 7.055569e-02	ci left: 1.289626e-01	ci right 1.384442e-01	k: 2673	n:20000
Cons ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
KS ci ratio: 2.312206e-02	ci left: 5.827952e-01	ci right 5.964788e-01	k: 11793	n:20000
EPHA1   20000 perm   5 sec   (4250 perm/sec)   p_kst 5.896500e-01   p_cons 4.475000e-02   p_joint 1.336500e-01

Joint ci ratio: 5.335262e-02	ci left: 1.484161e-01	ci right 1.565847e-01	k: 4574	n:30000
Cons ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
KS ci ratio: 1.900911e-02	ci left: 5.807356e-01	ci right 5.919144e-01	k: 17590	n:30000
EPHA1   30000 perm   7 sec   (4098 perm/sec)   p_kst 5.863333e-01   p_cons 4.496667e-02   p_joint 1.524667e-01

Joint ci ratio: 4.411143e-02	ci left: 1.612257e-01	ci right 1.685230e-01	k: 6594	n:40000
Cons ci ratio: 8.987397e-02	ci left: 4.335598e-02	ci right 4.746035e-02	k: 1815	n:40000
KS ci ratio: 1.689414e-02	ci left: 5.688609e-01	ci right 5.785784e-01	k: 22949	n:40000
EPHA1   40000 perm   10 sec   (3984 perm/sec)   p_kst 5.737250e-01   p_cons 4.537500e-02   p_joint 1.648500e-01

Outputting figure to mutsig2_images.part000000000057/EPHA1.10_3003_40000_0.57373_0.045375_0.16485.png
                gene_name: EPHA1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
ERBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
Cons ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
KS ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
ERBB2   10000 perm   2 sec   (4502 perm/sec)   p_kst 3.920000e-02   p_cons 3.333000e-01   p_joint 2.067000e-01

Joint ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
Cons ci ratio: 3.958980e-02	ci left: 3.223891e-01	ci right 3.354607e-01	k: 6578	n:20000
KS ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
ERBB2   20000 perm   5 sec   (4092 perm/sec)   p_kst 3.860000e-02   p_cons 3.289000e-01   p_joint 7.020000e-02

Joint ci ratio: 7.219995e-02	ci left: 8.622735e-02	ci right 9.271908e-02	k: 2683	n:30000
Cons ci ratio: 3.245105e-02	ci left: 3.218910e-01	ci right 3.325425e-01	k: 9816	n:30000
KS ci ratio: 1.113082e-01	ci left: 3.748611e-02	ci right 4.193693e-02	k: 1190	n:30000
ERBB2   30000 perm   8 sec   (3944 perm/sec)   p_kst 3.966667e-02   p_cons 3.272000e-01   p_joint 8.943333e-02

Joint ci ratio: 6.393695e-02	ci left: 8.314692e-02	ci right 8.866337e-02	k: 3435	n:40000
Cons ci ratio: 2.822086e-02	ci left: 3.207839e-01	ci right 3.299914e-01	k: 13015	n:40000
KS ci ratio: 9.677747e-02	ci left: 3.749008e-02	ci right 4.132716e-02	k: 1575	n:40000
ERBB2   40000 perm   10 sec   (3864 perm/sec)   p_kst 3.937500e-02   p_cons 3.253750e-01   p_joint 8.587500e-02

Outputting figure to mutsig2_images.part000000000057/ERBB2.10_3876_40000_0.039375_0.32538_0.085875.png
                gene_name: ERBB2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 21 percent done.
ENOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
ENOX2   10000 perm   2 sec   (4687 perm/sec)   p_kst 9.265000e-01   p_cons 7.581000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENOX2.9_1885_10000_0.9265_0.7581_1.png
                gene_name: ENOX2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
EPB41L1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
Cons ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
EPB41L1   10000 perm   2 sec   (4867 perm/sec)   p_kst 3.670000e-01   p_cons 7.719000e-01   p_joint 5.721000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L1.8_2730_10000_0.367_0.7719_0.5721.png
                gene_name: EPB41L1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 24 percent done.
EPB41L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
KS ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
EPB41L2   10000 perm   2 sec   (4532 perm/sec)   p_kst 9.580000e-01   p_cons 6.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPB41L2.9_3090_10000_0.958_0.6104_1.png
                gene_name: EPB41L2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
EPHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
KS ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
EPHA4   10000 perm   2 sec   (4815 perm/sec)   p_kst 7.620000e-01   p_cons 4.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPHA4.9_3029_10000_0.762_0.4978_1.png
                gene_name: EPHA4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ENPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
ENPEP   10000 perm   2 sec   (5061 perm/sec)   p_kst 6.523000e-01   p_cons 6.190000e-02   p_joint 2.756000e-01

Joint ci ratio: 6.809199e-02	ci left: 1.372884e-01	ci right 1.470159e-01	k: 2842	n:20000
Cons ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
KS ci ratio: 2.161189e-02	ci left: 6.151372e-01	ci right 6.286273e-01	k: 12438	n:20000
ENPEP   20000 perm   4 sec   (4570 perm/sec)   p_kst 6.219000e-01   p_cons 5.715000e-02   p_joint 1.421000e-01

Joint ci ratio: 5.483868e-02	ci left: 1.415278e-01	ci right 1.495410e-01	k: 4365	n:30000
Cons ci ratio: 9.553883e-02	ci left: 5.058932e-02	ci right 5.569766e-02	k: 1593	n:30000
KS ci ratio: 1.769514e-02	ci left: 6.150810e-01	ci right 6.260957e-01	k: 18618	n:30000
ENPEP   30000 perm   7 sec   (4373 perm/sec)   p_kst 6.206000e-01   p_cons 5.310000e-02   p_joint 1.455000e-01

Outputting figure to mutsig2_images.part000000000057/ENPEP.8_2954_30000_0.6206_0.0531_0.1455.png
                gene_name: ENPEP
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
EPPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
Cons ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
KS ci ratio: 1.418936e-02	ci left: 8.777662e-01	ci right 8.904090e-01	k: 8842	n:10000
EPPK1   10000 perm   3 sec   (3893 perm/sec)   p_kst 8.842000e-01   p_cons 1.233000e-01   p_joint 4.052000e-01

Joint ci ratio: 4.064432e-02	ci left: 3.109510e-01	ci right 3.239021e-01	k: 6348	n:20000
Cons ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
KS ci ratio: 1.007140e-02	ci left: 8.788712e-01	ci right 8.878170e-01	k: 17668	n:20000
EPPK1   20000 perm   6 sec   (3561 perm/sec)   p_kst 8.834000e-01   p_cons 1.213000e-01   p_joint 3.174000e-01

Outputting figure to mutsig2_images.part000000000057/EPPK1.8_7267_20000_0.8834_0.1213_0.3174.png
                gene_name: EPPK1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 30 percent done.
EPS8L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
Cons ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
KS ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
EPS8L3   10000 perm   2 sec   (5385 perm/sec)   p_kst 2.760000e-02   p_cons 8.556000e-01   p_joint 8.540000e-02

Joint ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
Cons ci ratio: 1.247617e-02	ci left: 8.262899e-01	ci right 8.367135e-01	k: 16631	n:20000
KS ci ratio: 1.679987e-01	ci left: 2.427010e-02	ci right 2.876898e-02	k: 529	n:20000
EPS8L3   20000 perm   4 sec   (4812 perm/sec)   p_kst 2.645000e-02   p_cons 8.315500e-01   p_joint 7.330000e-02

Joint ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
Cons ci ratio: 1.016054e-02	ci left: 8.279899e-01	ci right 8.364789e-01	k: 24968	n:30000
KS ci ratio: 1.386109e-01	ci left: 2.416419e-02	ci right 2.779507e-02	k: 778	n:30000
EPS8L3   30000 perm   7 sec   (4592 perm/sec)   p_kst 2.593333e-02   p_cons 8.322667e-01   p_joint 6.663333e-02

Joint ci ratio: 7.299413e-02	ci left: 6.479000e-02	ci right 6.972305e-02	k: 2689	n:40000
Cons ci ratio: 8.769790e-03	ci left: 8.295100e-01	ci right 8.368416e-01	k: 33328	n:40000
KS ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
EPS8L3   40000 perm   9 sec   (4457 perm/sec)   p_kst 2.637500e-02   p_cons 8.332000e-01   p_joint 6.722500e-02

Joint ci ratio: 7.194903e-02	ci left: 5.402017e-02	ci right 5.807157e-02	k: 2801	n:50000
Cons ci ratio: 7.851239e-03	ci left: 8.296410e-01	ci right 8.362003e-01	k: 41647	n:50000
KS ci ratio: 1.065012e-01	ci left: 2.497333e-02	ci right 2.780202e-02	k: 1318	n:50000
EPS8L3   50000 perm   11 sec   (4354 perm/sec)   p_kst 2.636000e-02   p_cons 8.329400e-01   p_joint 5.602000e-02

Joint ci ratio: 6.161298e-02	ci left: 6.124945e-02	ci right 6.515959e-02	k: 3791	n:60000
Cons ci ratio: 7.176329e-03	ci left: 8.295716e-01	ci right 8.355629e-01	k: 49955	n:60000
KS ci ratio: 9.640553e-02	ci left: 2.552236e-02	ci right 2.812368e-02	k: 1608	n:60000
EPS8L3   60000 perm   14 sec   (4250 perm/sec)   p_kst 2.680000e-02   p_cons 8.325833e-01   p_joint 6.318333e-02

Outputting figure to mutsig2_images.part000000000057/EPS8L3.8_1857_60000_0.0268_0.83258_0.063183.png
                gene_name: EPS8L3
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 31 percent done.
EPHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
EPHA8   10000 perm   2 sec   (4497 perm/sec)   p_kst 8.520000e-02   p_cons 2.778000e-01   p_joint 7.590000e-02

Joint ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
Cons ci ratio: 4.616244e-02	ci left: 2.588434e-01	ci right 2.711250e-01	k: 5299	n:20000
KS ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
EPHA8   20000 perm   5 sec   (4102 perm/sec)   p_kst 8.335000e-02   p_cons 2.649500e-01   p_joint 1.239000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA8.7_3259_20000_0.08335_0.26495_0.1239.png
                gene_name: EPHA8
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
EPHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
Cons ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
KS ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
EPHB2   10000 perm   2 sec   (4758 perm/sec)   p_kst 8.286000e-01   p_cons 1.823000e-01   p_joint 5.788000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB2.7_3028_10000_0.8286_0.1823_0.5788.png
                gene_name: EPHB2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
EPHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
Cons ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
KS ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
EPHB4   10000 perm   2 sec   (4737 perm/sec)   p_kst 6.631000e-01   p_cons 4.657000e-01   p_joint 7.467000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB4.7_3032_10000_0.6631_0.4657_0.7467.png
                gene_name: EPHB4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 35 percent done.
EPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 3.603702e-02	ci left: 5.320736e-01	ci right 5.517020e-01	k: 5419	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
EPX   10000 perm   2 sec   (5282 perm/sec)   p_kst 5.099000e-01   p_cons 5.419000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000057/EPX.7_2196_10000_0.5099_0.5419_0.6985.png
                gene_name: EPX
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 37 percent done.
ENPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
ENPP1   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.445000e-01   p_cons 2.606000e-01   p_joint 7.592000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP1.6_2878_10000_0.8445_0.2606_0.7592.png
                gene_name: ENPP1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 38 percent done.
EPAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
Cons ci ratio: 4.068000e-02	ci left: 4.715636e-01	ci right 4.912473e-01	k: 4814	n:10000
KS ci ratio: 1.831127e-02	ci left: 8.132417e-01	ci right 8.283709e-01	k: 8209	n:10000
EPAS1   10000 perm   2 sec   (4876 perm/sec)   p_kst 8.209000e-01   p_cons 4.814000e-01   p_joint 7.957000e-01

Outputting figure to mutsig2_images.part000000000057/EPAS1.6_2677_10000_0.8209_0.4814_0.7957.png
                gene_name: EPAS1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 39 percent done.
EPHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
KS ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
EPHA10   10000 perm   2 sec   (4996 perm/sec)   p_kst 3.519000e-01   p_cons 2.509000e-01   p_joint 3.070000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA10.6_3133_10000_0.3519_0.2509_0.307.png
                gene_name: EPHA10
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 41 percent done.
EPHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
EPHB3   10000 perm   2 sec   (4550 perm/sec)   p_kst 3.051000e-01   p_cons 8.200000e-03   p_joint 6.900000e-02

Joint ci ratio: 1.506346e-01	ci left: 3.027829e-02	ci right 3.525876e-02	k: 654	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 4.201533e-02	ci left: 2.968338e-01	ci right 3.096235e-01	k: 6064	n:20000
EPHB3   20000 perm   5 sec   (4241 perm/sec)   p_kst 3.032000e-01   p_cons 9.200000e-03   p_joint 3.270000e-02

Joint ci ratio: 1.216245e-01	ci left: 3.142775e-02	ci right 3.552991e-02	k: 1003	n:30000
Cons ci ratio: 2.310914e-01	ci left: 8.401935e-03	ci right 1.062794e-02	k: 284	n:30000
KS ci ratio: 3.438540e-02	ci left: 2.970395e-01	ci right 3.074655e-01	k: 9067	n:30000
EPHB3   30000 perm   7 sec   (4094 perm/sec)   p_kst 3.022333e-01   p_cons 9.466667e-03   p_joint 3.343333e-02

Joint ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
Cons ci ratio: 2.020189e-01	ci left: 8.382601e-03	ci right 1.028965e-02	k: 372	n:40000
KS ci ratio: 2.986299e-02	ci left: 2.965568e-01	ci right 3.055721e-01	k: 12042	n:40000
EPHB3   40000 perm   10 sec   (3995 perm/sec)   p_kst 3.010500e-01   p_cons 9.300000e-03   p_joint 3.225000e-02

Joint ci ratio: 9.897129e-02	ci left: 2.891245e-02	ci right 3.194239e-02	k: 1520	n:50000
Cons ci ratio: 1.815286e-01	ci left: 8.400834e-03	ci right 1.009688e-02	k: 461	n:50000
KS ci ratio: 2.766527e-02	ci left: 2.825196e-01	ci right 2.904652e-01	k: 14324	n:50000
EPHB3   50000 perm   13 sec   (3911 perm/sec)   p_kst 2.864800e-01   p_cons 9.220000e-03   p_joint 3.040000e-02

Joint ci ratio: 9.896315e-02	ci left: 2.422079e-02	ci right 2.675873e-02	k: 1528	n:60000
Cons ci ratio: 1.642828e-01	ci left: 8.627360e-03	ci right 1.018731e-02	k: 563	n:60000
KS ci ratio: 2.524042e-02	ci left: 2.831002e-01	ci right 2.903538e-01	k: 17203	n:60000
EPHB3   60000 perm   16 sec   (3839 perm/sec)   p_kst 2.867167e-01   p_cons 9.383333e-03   p_joint 2.546667e-02

Joint ci ratio: 9.422466e-02	ci left: 2.299049e-02	ci right 2.527776e-02	k: 1688	n:70000
Cons ci ratio: 1.533962e-01	ci left: 8.533471e-03	ci right 9.964795e-03	k: 646	n:70000
KS ci ratio: 2.234143e-02	ci left: 3.020318e-01	ci right 3.088701e-01	k: 21381	n:70000
EPHB3   70000 perm   19 sec   (3776 perm/sec)   p_kst 3.054429e-01   p_cons 9.228571e-03   p_joint 2.411429e-02

Joint ci ratio: 7.872231e-02	ci left: 2.887777e-02	ci right 3.125647e-02	k: 2404	n:80000
Cons ci ratio: 1.420828e-01	ci left: 8.754971e-03	ci right 1.010596e-02	k: 753	n:80000
KS ci ratio: 2.091425e-02	ci left: 3.019351e-01	ci right 3.083290e-01	k: 24410	n:80000
EPHB3   80000 perm   22 sec   (3717 perm/sec)   p_kst 3.051250e-01   p_cons 9.412500e-03   p_joint 3.005000e-02

Joint ci ratio: 7.215147e-02	ci left: 3.060860e-02	ci right 3.291059e-02	k: 2857	n:90000
Cons ci ratio: 1.328741e-01	ci left: 8.941012e-03	ci right 1.022423e-02	k: 861	n:90000
KS ci ratio: 1.985873e-02	ci left: 2.991232e-01	ci right 3.051340e-01	k: 27191	n:90000
EPHB3   90000 perm   25 sec   (3651 perm/sec)   p_kst 3.021222e-01   p_cons 9.566667e-03   p_joint 3.174444e-02

Joint ci ratio: 6.674798e-02	ci left: 3.222604e-02	ci right 3.446113e-02	k: 3333	n:100000
Cons ci ratio: 1.255127e-01	ci left: 9.053348e-03	ci right 1.027535e-02	k: 965	n:100000
KS ci ratio: 1.884158e-02	ci left: 2.992349e-01	ci right 3.049366e-01	k: 30208	n:100000
EPHB3   100000 perm   28 sec   (3597 perm/sec)   p_kst 3.020800e-01   p_cons 9.650000e-03   p_joint 3.333000e-02

Joint ci ratio: 6.107315e-02	ci left: 3.499639e-02	ci right 3.720998e-02	k: 3970	n:110000
Cons ci ratio: 1.194788e-01	ci left: 9.111576e-03	ci right 1.027813e-02	k: 1065	n:110000
KS ci ratio: 1.795890e-02	ci left: 2.995051e-01	ci right 3.049417e-01	k: 33244	n:110000
EPHB3   110000 perm   31 sec   (3542 perm/sec)   p_kst 3.022182e-01   p_cons 9.681818e-03   p_joint 3.609091e-02

Joint ci ratio: 6.150559e-02	ci left: 3.173371e-02	ci right 3.375562e-02	k: 3928	n:120000
Cons ci ratio: 1.143878e-01	ci left: 9.136980e-03	ci right 1.025357e-02	k: 1162	n:120000
KS ci ratio: 1.719545e-02	ci left: 2.995941e-01	ci right 3.047988e-01	k: 36263	n:120000
EPHB3   120000 perm   34 sec   (3494 perm/sec)   p_kst 3.021917e-01   p_cons 9.683333e-03   p_joint 3.273333e-02

Joint ci ratio: 5.730338e-02	ci left: 3.374959e-02	ci right 3.574816e-02	k: 4516	n:130000
Cons ci ratio: 1.175294e-01	ci left: 7.985701e-03	ci right 8.990255e-03	k: 1102	n:130000
KS ci ratio: 1.651242e-02	ci left: 2.999115e-01	ci right 3.049127e-01	k: 39313	n:130000
EPHB3   130000 perm   38 sec   (3447 perm/sec)   p_kst 3.024077e-01   p_cons 8.476923e-03   p_joint 3.473846e-02

Joint ci ratio: 5.271283e-02	ci left: 3.699743e-02	ci right 3.900748e-02	k: 5319	n:140000
Cons ci ratio: 1.139747e-01	ci left: 7.900797e-03	ci right 8.862588e-03	k: 1172	n:140000
KS ci ratio: 1.590265e-02	ci left: 3.002441e-01	ci right 3.050641e-01	k: 42371	n:140000
EPHB3   140000 perm   41 sec   (3401 perm/sec)   p_kst 3.026500e-01   p_cons 8.371429e-03   p_joint 3.799286e-02

Joint ci ratio: 4.214901e-02	ci left: 5.336972e-02	ci right 5.567420e-02	k: 8177	n:150000
Cons ci ratio: 1.102333e-01	ci left: 7.898937e-03	ci right 8.826884e-03	k: 1253	n:150000
KS ci ratio: 1.554775e-02	ci left: 2.953268e-01	ci right 2.999610e-01	k: 44646	n:150000
EPHB3   150000 perm   45 sec   (3357 perm/sec)   p_kst 2.976400e-01   p_cons 8.353333e-03   p_joint 5.451333e-02

Joint ci ratio: 4.346281e-02	ci left: 4.732875e-02	ci right 4.943765e-02	k: 7740	n:160000
Cons ci ratio: 1.061582e-01	ci left: 8.001203e-03	ci right 8.904245e-03	k: 1351	n:160000
KS ci ratio: 1.504201e-02	ci left: 2.957345e-01	ci right 3.002228e-01	k: 47676	n:160000
EPHB3   160000 perm   48 sec   (3315 perm/sec)   p_kst 2.979750e-01   p_cons 8.443750e-03   p_joint 4.837500e-02

Joint ci ratio: 4.346309e-02	ci left: 4.467135e-02	ci right 4.666183e-02	k: 7762	n:170000
Cons ci ratio: 1.027185e-01	ci left: 8.057597e-03	ci right 8.935759e-03	k: 1443	n:170000
KS ci ratio: 1.459962e-02	ci left: 2.956091e-01	ci right 2.999625e-01	k: 50623	n:170000
EPHB3   170000 perm   52 sec   (3271 perm/sec)   p_kst 2.977824e-01   p_cons 8.488235e-03   p_joint 4.565882e-02

Joint ci ratio: 4.353255e-02	ci left: 4.216641e-02	ci right 4.404834e-02	k: 7758	n:180000
Cons ci ratio: 9.913821e-02	ci left: 8.184005e-03	ci right 9.043045e-03	k: 1549	n:180000
KS ci ratio: 1.418506e-02	ci left: 2.957656e-01	ci right 2.999965e-01	k: 53618	n:180000
EPHB3   180000 perm   56 sec   (3231 perm/sec)   p_kst 2.978778e-01   p_cons 8.605556e-03   p_joint 4.310000e-02

Outputting figure to mutsig2_images.part000000000057/EPHB3.6_3061_180000_0.29788_0.0086056_0.0431.png
                gene_name: EPHB3
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.0086 
      ci_cons_bounds_left: 0.0082 
     ci_cons_bounds_right: 0.0090 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 42 percent done.
EPM2AIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
Cons ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
KS ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
EPM2AIP1   10000 perm   2 sec   (5213 perm/sec)   p_kst 3.879000e-01   p_cons 5.700000e-03   p_joint 1.930000e-02

Joint ci ratio: 1.564056e-01	ci left: 2.806407e-02	ci right 3.287372e-02	k: 608	n:20000
Cons ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
KS ci ratio: 3.487845e-02	ci left: 3.802914e-01	ci right 3.938414e-01	k: 7741	n:20000
EPM2AIP1   20000 perm   4 sec   (4642 perm/sec)   p_kst 3.870500e-01   p_cons 5.550000e-03   p_joint 3.040000e-02

Joint ci ratio: 1.426081e-01	ci left: 2.281229e-02	ci right 2.634727e-02	k: 736	n:30000
Cons ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
KS ci ratio: 2.845208e-02	ci left: 3.819816e-01	ci right 3.930402e-01	k: 11625	n:30000
EPM2AIP1   30000 perm   7 sec   (4477 perm/sec)   p_kst 3.875000e-01   p_cons 5.333333e-03   p_joint 2.453333e-02

Joint ci ratio: 1.217774e-01	ci left: 2.371035e-02	ci right 2.680909e-02	k: 1009	n:40000
Cons ci ratio: 2.653809e-01	ci left: 4.705407e-03	ci right 6.167803e-03	k: 216	n:40000
KS ci ratio: 2.555234e-02	ci left: 3.656646e-01	ci right 3.751542e-01	k: 14816	n:40000
EPM2AIP1   40000 perm   9 sec   (4354 perm/sec)   p_kst 3.704000e-01   p_cons 5.400000e-03   p_joint 2.522500e-02

Joint ci ratio: 1.136008e-01	ci left: 2.193712e-02	ci right 2.459862e-02	k: 1162	n:50000
Cons ci ratio: 2.401623e-01	ci left: 4.663632e-03	ci right 5.954827e-03	k: 264	n:50000
KS ci ratio: 2.293453e-02	ci left: 3.645487e-01	ci right 3.730265e-01	k: 18439	n:50000
EPM2AIP1   50000 perm   12 sec   (4260 perm/sec)   p_kst 3.687800e-01   p_cons 5.280000e-03   p_joint 2.324000e-02

Joint ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
Cons ci ratio: 2.101303e-01	ci left: 5.160675e-03	ci right 6.387872e-03	k: 345	n:60000
KS ci ratio: 2.093551e-02	ci left: 3.649375e-01	ci right 3.726752e-01	k: 22128	n:60000
EPM2AIP1   60000 perm   14 sec   (4182 perm/sec)   p_kst 3.688000e-01   p_cons 5.750000e-03   p_joint 2.066667e-02

Joint ci ratio: 1.060153e-01	ci left: 1.814059e-02	ci right 2.018526e-02	k: 1340	n:70000
Cons ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
KS ci ratio: 1.953578e-02	ci left: 3.615746e-01	ci right 3.687222e-01	k: 25560	n:70000
EPM2AIP1   70000 perm   17 sec   (4108 perm/sec)   p_kst 3.651429e-01   p_cons 5.557143e-03   p_joint 1.914286e-02

Joint ci ratio: 9.195217e-02	ci left: 2.119015e-02	ci right 2.324470e-02	k: 1776	n:80000
Cons ci ratio: 1.830458e-01	ci left: 5.178137e-03	ci right 6.233196e-03	k: 455	n:80000
KS ci ratio: 1.829751e-02	ci left: 3.612135e-01	ci right 3.678963e-01	k: 29164	n:80000
EPM2AIP1   80000 perm   20 sec   (4035 perm/sec)   p_kst 3.645500e-01   p_cons 5.687500e-03   p_joint 2.220000e-02

Joint ci ratio: 9.546726e-02	ci left: 1.751027e-02	ci right 1.927652e-02	k: 1654	n:90000
Cons ci ratio: 1.793857e-01	ci left: 4.804238e-03	ci right 5.761408e-03	k: 474	n:90000
KS ci ratio: 1.724263e-02	ci left: 3.616317e-01	ci right 3.679325e-01	k: 32830	n:90000
EPM2AIP1   90000 perm   23 sec   (3968 perm/sec)   p_kst 3.647778e-01   p_cons 5.266667e-03   p_joint 1.837778e-02

Joint ci ratio: 9.623894e-02	ci left: 1.553399e-02	ci right 1.711424e-02	k: 1631	n:100000
Cons ci ratio: 1.701443e-01	ci left: 4.830647e-03	ci right 5.738411e-03	k: 527	n:100000
KS ci ratio: 1.639063e-02	ci left: 3.608671e-01	ci right 3.668408e-01	k: 36385	n:100000
EPM2AIP1   100000 perm   26 sec   (3905 perm/sec)   p_kst 3.638500e-01   p_cons 5.270000e-03   p_joint 1.631000e-02

Joint ci ratio: 9.822289e-02	ci left: 1.357120e-02	ci right 1.498186e-02	k: 1569	n:110000
Cons ci ratio: 1.620581e-01	ci left: 4.862014e-03	ci right 5.728020e-03	k: 581	n:110000
KS ci ratio: 1.562006e-02	ci left: 3.612374e-01	ci right 3.669334e-01	k: 40049	n:110000
EPM2AIP1   110000 perm   29 sec   (3842 perm/sec)   p_kst 3.640818e-01   p_cons 5.281818e-03   p_joint 1.426364e-02

Joint ci ratio: 8.227296e-02	ci left: 1.780223e-02	ci right 1.933783e-02	k: 2227	n:120000
Cons ci ratio: 1.550250e-01	ci left: 4.889004e-03	ci right 5.718513e-03	k: 635	n:120000
KS ci ratio: 1.494831e-02	ci left: 3.615680e-01	ci right 3.670219e-01	k: 43715	n:120000
EPM2AIP1   120000 perm   32 sec   (3784 perm/sec)   p_kst 3.642917e-01   p_cons 5.291667e-03   p_joint 1.855833e-02

Joint ci ratio: 7.427427e-02	ci left: 2.019721e-02	ci right 2.176272e-02	k: 2726	n:130000
Cons ci ratio: 1.495995e-01	ci left: 4.860682e-03	ci right 5.653940e-03	k: 682	n:130000
KS ci ratio: 1.435115e-02	ci left: 3.620212e-01	ci right 3.672618e-01	k: 47403	n:130000
EPM2AIP1   130000 perm   35 sec   (3726 perm/sec)   p_kst 3.646385e-01   p_cons 5.246154e-03   p_joint 2.096923e-02

Joint ci ratio: 7.384922e-02	ci left: 1.899949e-02	ci right 2.046336e-02	k: 2761	n:140000
Cons ci ratio: 1.447064e-01	ci left: 4.836842e-03	ci right 5.598158e-03	k: 729	n:140000
KS ci ratio: 1.382601e-02	ci left: 3.622206e-01	ci right 3.672707e-01	k: 51064	n:140000
EPM2AIP1   140000 perm   38 sec   (3671 perm/sec)   p_kst 3.647429e-01   p_cons 5.207143e-03   p_joint 1.972143e-02

Joint ci ratio: 8.872298e-02	ci left: 1.227636e-02	ci right 1.342259e-02	k: 1926	n:150000
Cons ci ratio: 1.345514e-01	ci left: 5.247939e-03	ci right 6.011361e-03	k: 843	n:150000
KS ci ratio: 1.334596e-02	ci left: 3.626961e-01	ci right 3.675758e-01	k: 54770	n:150000
EPM2AIP1   150000 perm   42 sec   (3614 perm/sec)   p_kst 3.651333e-01   p_cons 5.620000e-03   p_joint 1.284000e-02

Joint ci ratio: 7.726840e-02	ci left: 1.521916e-02	ci right 1.644847e-02	k: 2532	n:160000
Cons ci ratio: 1.310323e-01	ci left: 5.197883e-03	ci right 5.932707e-03	k: 889	n:160000
KS ci ratio: 1.293881e-02	ci left: 3.621785e-01	ci right 3.669014e-01	k: 58326	n:160000
EPM2AIP1   160000 perm   45 sec   (3561 perm/sec)   p_kst 3.645375e-01   p_cons 5.556250e-03   p_joint 1.582500e-02

Joint ci ratio: 7.847687e-02	ci left: 1.389672e-02	ci right 1.503757e-02	k: 2458	n:170000
Cons ci ratio: 1.270272e-01	ci left: 5.216601e-03	ci right 5.929831e-03	k: 946	n:170000
KS ci ratio: 1.254507e-02	ci left: 3.625229e-01	ci right 3.671053e-01	k: 62018	n:170000
EPM2AIP1   170000 perm   48 sec   (3510 perm/sec)   p_kst 3.648118e-01   p_cons 5.564706e-03   p_joint 1.445882e-02

Joint ci ratio: 7.739946e-02	ci left: 1.350589e-02	ci right 1.459874e-02	k: 2528	n:180000
Cons ci ratio: 1.235540e-01	ci left: 5.217388e-03	ci right 5.909794e-03	k: 1000	n:180000
KS ci ratio: 1.221902e-02	ci left: 3.615492e-01	ci right 3.659996e-01	k: 65479	n:180000
EPM2AIP1   180000 perm   52 sec   (3451 perm/sec)   p_kst 3.637722e-01   p_cons 5.555556e-03   p_joint 1.404444e-02

Joint ci ratio: 7.359969e-02	ci left: 1.416880e-02	ci right 1.525660e-02	k: 2794	n:190000
Cons ci ratio: 1.197249e-01	ci left: 5.274495e-03	ci right 5.951250e-03	k: 1065	n:190000
KS ci ratio: 1.189836e-02	ci left: 3.614050e-01	ci right 3.657360e-01	k: 69078	n:190000
EPM2AIP1   190000 perm   56 sec   (3407 perm/sec)   p_kst 3.635684e-01   p_cons 5.605263e-03   p_joint 1.470526e-02

Joint ci ratio: 7.483103e-02	ci left: 1.302824e-02	ci right 1.404593e-02	k: 2706	n:200000
Cons ci ratio: 1.163864e-01	ci left: 5.311622e-03	ci right 5.972830e-03	k: 1127	n:200000
KS ci ratio: 1.159518e-02	ci left: 3.615362e-01	ci right 3.657577e-01	k: 72729	n:200000
EPM2AIP1   200000 perm   59 sec   (3363 perm/sec)   p_kst 3.636450e-01   p_cons 5.635000e-03   p_joint 1.353000e-02

Joint ci ratio: 7.322832e-02	ci left: 1.296868e-02	ci right 1.395910e-02	k: 2826	n:210000
Cons ci ratio: 1.135044e-01	ci left: 5.326940e-03	ci right 5.972535e-03	k: 1185	n:210000
KS ci ratio: 1.131859e-02	ci left: 3.614708e-01	ci right 3.655901e-01	k: 76341	n:210000
EPM2AIP1   210000 perm   63 sec   (3321 perm/sec)   p_kst 3.635286e-01   p_cons 5.642857e-03   p_joint 1.345714e-02

Joint ci ratio: 7.192250e-02	ci left: 1.284332e-02	ci right 1.380593e-02	k: 2930	n:220000
Cons ci ratio: 1.114134e-01	ci left: 5.283591e-03	ci right 5.911361e-03	k: 1230	n:220000
KS ci ratio: 1.106241e-02	ci left: 3.613488e-01	ci right 3.653729e-01	k: 79939	n:220000
EPM2AIP1   220000 perm   67 sec   (3273 perm/sec)   p_kst 3.633591e-01   p_cons 5.590909e-03   p_joint 1.331818e-02

Joint ci ratio: 7.145137e-02	ci left: 1.245562e-02	ci right 1.338281e-02	k: 2970	n:230000
Cons ci ratio: 1.089626e-01	ci left: 5.290639e-03	ci right 5.904530e-03	k: 1286	n:230000
KS ci ratio: 1.081261e-02	ci left: 3.616771e-01	ci right 3.656133e-01	k: 83638	n:230000
EPM2AIP1   230000 perm   71 sec   (3228 perm/sec)   p_kst 3.636435e-01   p_cons 5.591304e-03   p_joint 1.291304e-02

Joint ci ratio: 7.159295e-02	ci left: 1.189559e-02	ci right 1.278291e-02	k: 2960	n:240000
Cons ci ratio: 1.065869e-01	ci left: 5.305350e-03	ci right 5.906684e-03	k: 1344	n:240000
KS ci ratio: 1.059043e-02	ci left: 3.614795e-01	ci right 3.653322e-01	k: 87217	n:240000
EPM2AIP1   240000 perm   75 sec   (3182 perm/sec)   p_kst 3.634042e-01   p_cons 5.600000e-03   p_joint 1.233333e-02

Joint ci ratio: 6.588047e-02	ci left: 1.350374e-02	ci right 1.442758e-02	k: 3490	n:250000
Cons ci ratio: 1.045100e-01	ci left: 5.303433e-03	ci right 5.892118e-03	k: 1398	n:250000
KS ci ratio: 1.038464e-02	ci left: 3.611546e-01	ci right 3.649286e-01	k: 90760	n:250000
EPM2AIP1   250000 perm   80 sec   (3141 perm/sec)   p_kst 3.630400e-01   p_cons 5.592000e-03   p_joint 1.396000e-02

Joint ci ratio: 6.179281e-02	ci left: 1.477108e-02	ci right 1.571669e-02	k: 3962	n:260000
Cons ci ratio: 1.026566e-01	ci left: 5.290525e-03	ci right 5.866734e-03	k: 1449	n:260000
KS ci ratio: 1.019013e-02	ci left: 3.608670e-01	ci right 3.645669e-01	k: 94306	n:260000
EPM2AIP1   260000 perm   84 sec   (3101 perm/sec)   p_kst 3.627154e-01   p_cons 5.573077e-03   p_joint 1.523846e-02

Joint ci ratio: 6.007265e-02	ci left: 1.505930e-02	ci right 1.599559e-02	k: 4191	n:270000
Cons ci ratio: 1.007972e-01	ci left: 5.289491e-03	ci right 5.854535e-03	k: 1503	n:270000
KS ci ratio: 1.000446e-02	ci left: 3.606790e-01	ci right 3.643092e-01	k: 97873	n:270000
EPM2AIP1   270000 perm   88 sec   (3060 perm/sec)   p_kst 3.624926e-01   p_cons 5.566667e-03   p_joint 1.552222e-02

Joint ci ratio: 5.999520e-02	ci left: 1.456709e-02	ci right 1.547156e-02	k: 4204	n:280000
Cons ci ratio: 9.945338e-02	ci left: 5.243336e-03	ci right 5.795546e-03	k: 1544	n:280000
KS ci ratio: 9.822744e-03	ci left: 3.607797e-01	ci right 3.643446e-01	k: 101517	n:280000
EPM2AIP1   280000 perm   93 sec   (3023 perm/sec)   p_kst 3.625607e-01   p_cons 5.514286e-03   p_joint 1.501429e-02

Outputting figure to mutsig2_images.part000000000057/EPM2AIP1.6_1828_280000_0.36256_0.0055143_0.015014.png
                gene_name: EPM2AIP1
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.015 

Current progress: 44 percent done.
EPS15L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
EPS15L1   10000 perm   2 sec   (5016 perm/sec)   p_kst 8.115000e-01   p_cons 4.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS15L1.6_2687_10000_0.8115_0.4198_1.png
                gene_name: EPS15L1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ENPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
KS ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
ENPP7   10000 perm   2 sec   (5347 perm/sec)   p_kst 1.106000e-01   p_cons 8.951000e-01   p_joint 2.209000e-01

Joint ci ratio: 5.980009e-02	ci left: 1.715350e-01	ci right 1.821591e-01	k: 3536	n:20000
Cons ci ratio: 9.578505e-03	ci left: 8.889898e-01	ci right 8.975954e-01	k: 17867	n:20000
KS ci ratio: 8.075267e-02	ci left: 1.011278e-01	ci right 1.096873e-01	k: 2107	n:20000
ENPP7   20000 perm   4 sec   (4825 perm/sec)   p_kst 1.053500e-01   p_cons 8.933500e-01   p_joint 1.768000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP7.5_1397_20000_0.10535_0.89335_0.1768.png
                gene_name: ENPP7
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
ENTHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
ENTHD1   10000 perm   2 sec   (5108 perm/sec)   p_kst 3.993000e-01   p_cons 1.248000e-01   p_joint 2.500000e-01

Joint ci ratio: 4.698830e-02	ci left: 2.520459e-01	ci right 2.642245e-01	k: 5162	n:20000
Cons ci ratio: 7.278719e-02	ci left: 1.220210e-01	ci right 1.312878e-01	k: 2532	n:20000
KS ci ratio: 3.392374e-02	ci left: 3.934995e-01	ci right 4.071295e-01	k: 8006	n:20000
ENTHD1   20000 perm   4 sec   (4614 perm/sec)   p_kst 4.003000e-01   p_cons 1.266000e-01   p_joint 2.581000e-01

Outputting figure to mutsig2_images.part000000000057/ENTHD1.5_1848_20000_0.4003_0.1266_0.2581.png
                gene_name: ENTHD1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 48 percent done.
EPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
Cons ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KS ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
EPN1   10000 perm   2 sec   (5011 perm/sec)   p_kst 5.490000e-02   p_cons 8.921000e-01   p_joint 1.182000e-01

Joint ci ratio: 6.228641e-02	ci left: 1.601266e-01	ci right 1.704709e-01	k: 3305	n:20000
Cons ci ratio: 9.921750e-03	ci left: 8.819717e-01	ci right 8.908156e-01	k: 17729	n:20000
KS ci ratio: 1.119615e-01	ci left: 5.450789e-02	ci right 6.102142e-02	k: 1154	n:20000
EPN1   20000 perm   4 sec   (4547 perm/sec)   p_kst 5.770000e-02   p_cons 8.864500e-01   p_joint 1.652500e-01

Joint ci ratio: 5.717354e-02	ci left: 1.315800e-01	ci right 1.393574e-01	k: 4063	n:30000
Cons ci ratio: 7.712684e-03	ci left: 8.924568e-01	ci right 8.993996e-01	k: 26879	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
EPN1   30000 perm   7 sec   (4361 perm/sec)   p_kst 5.750000e-02   p_cons 8.959667e-01   p_joint 1.354333e-01

Outputting figure to mutsig2_images.part000000000057/EPN1.5_2112_30000_0.0575_0.89597_0.13543.png
                gene_name: EPN1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 49 percent done.
ENTPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
Cons ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
KS ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
ENTPD1   10000 perm   2 sec   (5315 perm/sec)   p_kst 4.779000e-01   p_cons 5.133000e-01   p_joint 5.758000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD1.4_1670_10000_0.4779_0.5133_0.5758.png
                gene_name: ENTPD1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 51 percent done.
EPB41L4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
EPB41L4A   10000 perm   2 sec   (5203 perm/sec)   p_kst 2.253000e-01   p_cons 6.770000e-02   p_joint 8.710000e-02

Joint ci ratio: 8.848931e-02	ci left: 8.538264e-02	ci right 9.333722e-02	k: 1786	n:20000
Cons ci ratio: 1.021734e-01	ci left: 6.503709e-02	ci right 7.208897e-02	k: 1370	n:20000
KS ci ratio: 5.200245e-02	ci left: 2.154636e-01	ci right 2.270176e-01	k: 4424	n:20000
EPB41L4A   20000 perm   4 sec   (4727 perm/sec)   p_kst 2.212000e-01   p_cons 6.850000e-02   p_joint 8.930000e-02

Joint ci ratio: 6.008906e-02	ci left: 1.204878e-01	ci right 1.279852e-01	k: 3726	n:30000
Cons ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
KS ci ratio: 4.265601e-02	ci left: 2.149592e-01	ci right 2.243618e-01	k: 6589	n:30000
EPB41L4A   30000 perm   7 sec   (4529 perm/sec)   p_kst 2.196333e-01   p_cons 6.786667e-02   p_joint 1.242000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L4A.4_2153_30000_0.21963_0.067867_0.1242.png
                gene_name: EPB41L4A
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
EPB41L4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
Cons ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
KS ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
EPB41L4B   10000 perm   2 sec   (4945 perm/sec)   p_kst 5.633000e-01   p_cons 2.370000e-02   p_joint 1.127000e-01

Joint ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
Cons ci ratio: 1.730984e-01	ci left: 2.283264e-02	ci right 2.720694e-02	k: 499	n:20000
KS ci ratio: 2.442908e-02	ci left: 5.558916e-01	ci right 5.696901e-01	k: 11256	n:20000
EPB41L4B   20000 perm   4 sec   (4475 perm/sec)   p_kst 5.628000e-01   p_cons 2.495000e-02   p_joint 8.705000e-02

Joint ci ratio: 8.795320e-02	ci left: 5.936226e-02	ci right 6.485626e-02	k: 1862	n:30000
Cons ci ratio: 1.386109e-01	ci left: 2.416419e-02	ci right 2.779507e-02	k: 778	n:30000
KS ci ratio: 2.013241e-02	ci left: 5.525918e-01	ci right 5.638636e-01	k: 16747	n:30000
EPB41L4B   30000 perm   7 sec   (4299 perm/sec)   p_kst 5.582333e-01   p_cons 2.593333e-02   p_joint 6.206667e-02

Joint ci ratio: 5.793426e-02	ci left: 9.971684e-02	ci right 1.056910e-01	k: 4107	n:40000
Cons ci ratio: 1.265505e-01	ci left: 2.194073e-02	ci right 2.492900e-02	k: 936	n:40000
KS ci ratio: 1.752154e-02	ci left: 5.509143e-01	ci right 5.606776e-01	k: 22232	n:40000
EPB41L4B   40000 perm   10 sec   (4178 perm/sec)   p_kst 5.558000e-01   p_cons 2.340000e-02   p_joint 1.026750e-01

Joint ci ratio: 5.587358e-02	ci left: 8.711046e-02	ci right 9.213730e-02	k: 4480	n:50000
Cons ci ratio: 1.129562e-01	ci left: 2.218992e-02	ci right 2.486580e-02	k: 1175	n:50000
KS ci ratio: 1.561289e-02	ci left: 5.532934e-01	ci right 5.620199e-01	k: 27883	n:50000
EPB41L4B   50000 perm   12 sec   (4087 perm/sec)   p_kst 5.576600e-01   p_cons 2.350000e-02   p_joint 8.960000e-02

Joint ci ratio: 5.000165e-02	ci left: 9.058862e-02	ci right 9.525085e-02	k: 5574	n:60000
Cons ci ratio: 1.030846e-01	ci left: 2.231889e-02	ci right 2.476083e-02	k: 1411	n:60000
KS ci ratio: 1.423318e-02	ci left: 5.543488e-01	ci right 5.623122e-01	k: 33500	n:60000
EPB41L4B   60000 perm   15 sec   (4005 perm/sec)   p_kst 5.583333e-01   p_cons 2.351667e-02   p_joint 9.290000e-02

Joint ci ratio: 5.385653e-02	ci left: 6.845916e-02	ci right 7.226226e-02	k: 4924	n:70000
Cons ci ratio: 9.439662e-02	ci left: 2.290675e-02	ci right 2.519008e-02	k: 1682	n:70000
KS ci ratio: 1.315922e-02	ci left: 5.553267e-01	ci right 5.626970e-01	k: 39131	n:70000
EPB41L4B   70000 perm   18 sec   (3922 perm/sec)   p_kst 5.590143e-01   p_cons 2.402857e-02   p_joint 7.034286e-02

Outputting figure to mutsig2_images.part000000000057/EPB41L4B.4_2959_70000_0.55901_0.024029_0.070343.png
                gene_name: EPB41L4B
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 54 percent done.
EPB41L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
Cons ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
EPB41L5   10000 perm   2 sec   (5322 perm/sec)   p_kst 7.794000e-01   p_cons 2.309000e-01   p_joint 5.883000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L5.4_2483_10000_0.7794_0.2309_0.5883.png
                gene_name: EPB41L5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 55 percent done.
EPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
Cons ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
EPC1   10000 perm   2 sec   (5582 perm/sec)   p_kst 3.787000e-01   p_cons 6.090000e-02   p_joint 1.559000e-01

Joint ci ratio: 6.413168e-02	ci left: 1.523286e-01	ci right 1.624712e-01	k: 3147	n:20000
Cons ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
KS ci ratio: 3.469175e-02	ci left: 3.828330e-01	ci right 3.963991e-01	k: 7792	n:20000
EPC1   20000 perm   4 sec   (4978 perm/sec)   p_kst 3.896000e-01   p_cons 6.065000e-02   p_joint 1.573500e-01

Joint ci ratio: 5.624063e-02	ci left: 1.354331e-01	ci right 1.433035e-01	k: 4180	n:30000
Cons ci ratio: 8.976508e-02	ci left: 5.707763e-02	ci right 6.247468e-02	k: 1792	n:30000
KS ci ratio: 2.822169e-02	ci left: 3.858380e-01	ci right 3.969164e-01	k: 11741	n:30000
EPC1   30000 perm   6 sec   (4684 perm/sec)   p_kst 3.913667e-01   p_cons 5.973333e-02   p_joint 1.393333e-01

Outputting figure to mutsig2_images.part000000000057/EPC1.4_2571_30000_0.39137_0.059733_0.13933.png
                gene_name: EPC1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 56 percent done.
EPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
Cons ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
EPC2   10000 perm   2 sec   (5050 perm/sec)   p_kst 9.030000e-02   p_cons 3.215000e-01   p_joint 1.598000e-01

Joint ci ratio: 7.063193e-02	ci left: 1.287164e-01	ci right 1.381905e-01	k: 2668	n:20000
Cons ci ratio: 4.037390e-02	ci left: 3.138350e-01	ci right 3.268173e-01	k: 6406	n:20000
KS ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
EPC2   20000 perm   4 sec   (4569 perm/sec)   p_kst 8.745000e-02   p_cons 3.203000e-01   p_joint 1.334000e-01

Outputting figure to mutsig2_images.part000000000057/EPC2.4_2480_20000_0.08745_0.3203_0.1334.png
                gene_name: EPC2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 58 percent done.
EPDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
Cons ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
KS ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
EPDR1   10000 perm   2 sec   (5744 perm/sec)   p_kst 6.690000e-02   p_cons 5.020000e-02   p_joint 6.620000e-02

Joint ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
Cons ci ratio: 1.165856e-01	ci left: 5.037280e-02	ci right 5.665781e-02	k: 1069	n:20000
KS ci ratio: 1.056048e-01	ci left: 6.103661e-02	ci right 6.789068e-02	k: 1288	n:20000
EPDR1   20000 perm   4 sec   (5148 perm/sec)   p_kst 6.440000e-02   p_cons 5.345000e-02   p_joint 2.905000e-02

Joint ci ratio: 9.601689e-02	ci left: 5.010068e-02	ci right 5.518640e-02	k: 1578	n:30000
Cons ci ratio: 9.676305e-02	ci left: 4.935155e-02	ci right 5.440235e-02	k: 1555	n:30000
KS ci ratio: 8.671902e-02	ci left: 6.099481e-02	ci right 6.655671e-02	k: 1912	n:30000
EPDR1   30000 perm   6 sec   (4920 perm/sec)   p_kst 6.373333e-02   p_cons 5.183333e-02   p_joint 5.260000e-02

Outputting figure to mutsig2_images.part000000000057/EPDR1.4_1047_30000_0.063733_0.051833_0.0526.png
                gene_name: EPDR1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 59 percent done.
EPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
Cons ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
KS ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
EPN2   10000 perm   2 sec   (5473 perm/sec)   p_kst 3.270000e-02   p_cons 5.022000e-01   p_joint 5.910000e-02

Joint ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
Cons ci ratio: 2.852078e-02	ci left: 4.787508e-01	ci right 4.926533e-01	k: 9714	n:20000
KS ci ratio: 1.534422e-01	ci left: 2.917075e-02	ci right 3.406667e-02	k: 631	n:20000
EPN2   20000 perm   4 sec   (4871 perm/sec)   p_kst 3.155000e-02   p_cons 4.857000e-01   p_joint 4.795000e-02

Joint ci ratio: 1.123436e-01	ci left: 3.680495e-02	ci right 4.121823e-02	k: 1169	n:30000
Cons ci ratio: 2.329239e-02	ci left: 4.799294e-01	ci right 4.912734e-01	k: 14568	n:30000
KS ci ratio: 1.240085e-01	ci left: 3.023114e-02	ci right 3.426011e-02	k: 966	n:30000
EPN2   30000 perm   6 sec   (4629 perm/sec)   p_kst 3.220000e-02   p_cons 4.856000e-01   p_joint 3.896667e-02

Joint ci ratio: 8.534367e-02	ci left: 4.795789e-02	ci right 5.225773e-02	k: 2003	n:40000
Cons ci ratio: 2.026414e-02	ci left: 4.784167e-01	ci right 4.882357e-01	k: 19333	n:40000
KS ci ratio: 1.056026e-01	ci left: 3.153881e-02	ci right 3.507936e-02	k: 1331	n:40000
EPN2   40000 perm   9 sec   (4479 perm/sec)   p_kst 3.327500e-02   p_cons 4.833250e-01   p_joint 5.007500e-02

Joint ci ratio: 7.759764e-02	ci left: 4.667257e-02	ci right 5.046006e-02	k: 2427	n:50000
Cons ci ratio: 1.814618e-02	ci left: 4.783511e-01	ci right 4.871309e-01	k: 24137	n:50000
KS ci ratio: 9.510600e-02	ci left: 3.129505e-02	ci right 3.443949e-02	k: 1642	n:50000
EPN2   50000 perm   11 sec   (4364 perm/sec)   p_kst 3.284000e-02   p_cons 4.827400e-01   p_joint 4.854000e-02

Outputting figure to mutsig2_images.part000000000057/EPN2.4_1962_50000_0.03284_0.48274_0.04854.png
                gene_name: EPN2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 61 percent done.
EPS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
KS ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
EPS8   10000 perm   2 sec   (5145 perm/sec)   p_kst 1.453000e-01   p_cons 3.812000e-01   p_joint 2.702000e-01

Outputting figure to mutsig2_images.part000000000057/EPS8.4_2549_10000_0.1453_0.3812_0.2702.png
                gene_name: EPS8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
EPSTI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
Cons ci ratio: 1.135904e-02	ci left: 9.171884e-01	ci right 9.277639e-01	k: 9226	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
EPSTI1   10000 perm   2 sec   (6098 perm/sec)   p_kst 4.200000e-02   p_cons 9.226000e-01   p_joint 1.290000e-01

Joint ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
Cons ci ratio: 7.791796e-03	ci left: 9.231028e-01	ci right 9.303726e-01	k: 18536	n:20000
KS ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
EPSTI1   20000 perm   4 sec   (5420 perm/sec)   p_kst 4.045000e-02   p_cons 9.268000e-01   p_joint 1.021000e-01

Joint ci ratio: 7.478422e-02	ci left: 8.075379e-02	ci right 8.706040e-02	k: 2516	n:30000
Cons ci ratio: 6.278287e-03	ci left: 9.255939e-01	ci right 9.314561e-01	k: 27857	n:30000
KS ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
EPSTI1   30000 perm   6 sec   (5159 perm/sec)   p_kst 4.156667e-02   p_cons 9.285667e-01   p_joint 8.386667e-02

Joint ci ratio: 6.531922e-02	ci left: 7.989558e-02	ci right 8.531520e-02	k: 3303	n:40000
Cons ci ratio: 5.452961e-03	ci left: 9.256010e-01	ci right 9.306866e-01	k: 37127	n:40000
KS ci ratio: 9.485163e-02	ci left: 3.900438e-02	ci right 4.291261e-02	k: 1637	n:40000
EPSTI1   40000 perm   8 sec   (4960 perm/sec)   p_kst 4.092500e-02   p_cons 9.281750e-01   p_joint 8.257500e-02

Outputting figure to mutsig2_images.part000000000057/EPSTI1.4_1285_40000_0.040925_0.92817_0.082575.png
                gene_name: EPSTI1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 63 percent done.
EPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KS ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
EPT1   10000 perm   2 sec   (5772 perm/sec)   p_kst 7.926000e-01   p_cons 7.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPT1.4_1234_10000_0.7926_0.7495_1.png
                gene_name: EPT1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ERBB2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
KS ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
ERBB2IP   10000 perm   2 sec   (5038 perm/sec)   p_kst 6.081000e-01   p_cons 4.520000e-02   p_joint 1

Joint ci ratio: 2.224628e-02	ci left: 6.013943e-01	ci right 6.149742e-01	k: 12164	n:20000
Cons ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
KS ci ratio: 2.228597e-02	ci left: 6.005419e-01	ci right 6.141269e-01	k: 12147	n:20000
ERBB2IP   20000 perm   4 sec   (4543 perm/sec)   p_kst 6.073500e-01   p_cons 4.615000e-02   p_joint 6.082000e-01

Joint ci ratio: 3.484741e-02	ci left: 2.914678e-01	ci right 3.018383e-01	k: 8899	n:30000
Cons ci ratio: 9.827099e-02	ci left: 4.788630e-02	ci right 5.286790e-02	k: 1510	n:30000
KS ci ratio: 1.819356e-02	ci left: 6.018807e-01	ci right 6.129652e-01	k: 18223	n:30000
ERBB2IP   30000 perm   7 sec   (4334 perm/sec)   p_kst 6.074333e-01   p_cons 5.033333e-02   p_joint 2.966333e-01

Outputting figure to mutsig2_images.part000000000057/ERBB2IP.4_4208_30000_0.60743_0.050333_0.29663.png
                gene_name: ERBB2IP
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 66 percent done.
ENKUR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
ENKUR   10000 perm   2 sec   (6436 perm/sec)   p_kst 9.800000e-03   p_cons 6.400000e-03   p_joint 0

Joint ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
Cons ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
KS ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
ENKUR   20000 perm   4 sec   (5657 perm/sec)   p_kst 8.750000e-03   p_cons 6.200000e-03   p_joint 2.250000e-03

Joint ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
Cons ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
KS ci ratio: 2.509646e-01	ci left: 7.054391e-03	ci right 9.109257e-03	k: 241	n:30000
ENKUR   30000 perm   6 sec   (5365 perm/sec)   p_kst 8.033333e-03   p_cons 6.166667e-03   p_joint 6.166667e-03

Joint ci ratio: 2.915178e-01	ci left: 3.844594e-03	ci right 5.178911e-03	k: 179	n:40000
Cons ci ratio: 2.423137e-01	ci left: 5.712489e-03	ci right 7.310422e-03	k: 259	n:40000
KS ci ratio: 2.203457e-01	ci left: 6.984896e-03	ci right 8.737684e-03	k: 313	n:40000
ENKUR   40000 perm   8 sec   (5165 perm/sec)   p_kst 7.825000e-03   p_cons 6.475000e-03   p_joint 4.475000e-03

Joint ci ratio: 3.065342e-01	ci left: 2.760914e-03	ci right 3.778109e-03	k: 162	n:50000
Cons ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
KS ci ratio: 1.944787e-01	ci left: 7.275890e-03	ci right 8.862022e-03	k: 402	n:50000
ENKUR   50000 perm   10 sec   (5018 perm/sec)   p_kst 8.040000e-03   p_cons 6.440000e-03   p_joint 3.240000e-03

Joint ci ratio: 3.011110e-01	ci left: 2.393067e-03	ci right 3.256140e-03	k: 168	n:60000
Cons ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
KS ci ratio: 1.747506e-01	ci left: 7.589587e-03	ci right 9.058568e-03	k: 498	n:60000
ENKUR   60000 perm   12 sec   (4897 perm/sec)   p_kst 8.300000e-03   p_cons 6.600000e-03   p_joint 2.800000e-03

Joint ci ratio: 2.994014e-01	ci left: 2.077566e-03	ci right 2.821779e-03	k: 170	n:70000
Cons ci ratio: 1.815731e-01	ci left: 6.013545e-03	ci right 7.227896e-03	k: 462	n:70000
KS ci ratio: 1.641012e-01	ci left: 7.421892e-03	ci right 8.762223e-03	k: 565	n:70000
ENKUR   70000 perm   15 sec   (4782 perm/sec)   p_kst 8.071429e-03   p_cons 6.600000e-03   p_joint 2.428571e-03

Joint ci ratio: 3.718094e-01	ci left: 1.130214e-03	ci right 1.657013e-03	k: 110	n:80000
Cons ci ratio: 1.726848e-01	ci left: 5.847163e-03	ci right 6.964086e-03	k: 511	n:80000
KS ci ratio: 1.542082e-01	ci left: 7.394333e-03	ci right 8.641742e-03	k: 640	n:80000
ENKUR   80000 perm   17 sec   (4681 perm/sec)   p_kst 8.000000e-03   p_cons 6.387500e-03   p_joint 1.375000e-03

Joint ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
Cons ci ratio: 1.621023e-01	ci left: 5.932071e-03	ci right 6.989007e-03	k: 580	n:90000
KS ci ratio: 1.450977e-01	ci left: 7.460470e-03	ci right 8.638236e-03	k: 723	n:90000
ENKUR   90000 perm   20 sec   (4591 perm/sec)   p_kst 8.033333e-03   p_cons 6.444444e-03   p_joint 7.222222e-04

Joint ci ratio: 5.542303e-01	ci left: 3.625260e-04	ci right 6.477549e-04	k: 49	n:100000
Cons ci ratio: 1.550650e-01	ci left: 5.857423e-03	ci right 6.851536e-03	k: 634	n:100000
KS ci ratio: 1.370047e-01	ci left: 7.563412e-03	ci right 8.685399e-03	k: 811	n:100000
ENKUR   100000 perm   22 sec   (4503 perm/sec)   p_kst 8.110000e-03   p_cons 6.340000e-03   p_joint 4.900000e-04

Joint ci ratio: 5.598727e-01	ci left: 3.217571e-04	ci right 5.785137e-04	k: 48	n:110000
Cons ci ratio: 1.481157e-01	ci left: 5.858447e-03	ci right 6.804228e-03	k: 695	n:110000
KS ci ratio: 1.308655e-01	ci left: 7.561167e-03	ci right 8.628650e-03	k: 889	n:110000
ENKUR   110000 perm   25 sec   (4415 perm/sec)   p_kst 8.081818e-03   p_cons 6.318182e-03   p_joint 4.363636e-04

Joint ci ratio: 6.047608e-01	ci left: 2.451967e-04	ci right 4.634812e-04	k: 41	n:120000
Cons ci ratio: 1.429776e-01	ci left: 5.779751e-03	ci right 6.677696e-03	k: 746	n:120000
KS ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
ENKUR   120000 perm   28 sec   (4337 perm/sec)   p_kst 8.091667e-03   p_cons 6.216667e-03   p_joint 3.416667e-04

Joint ci ratio: 6.121022e-01	ci left: 2.198287e-04	ci right 4.189663e-04	k: 40	n:130000
Cons ci ratio: 1.373898e-01	ci left: 5.795358e-03	ci right 6.657660e-03	k: 808	n:130000
KS ci ratio: 1.201383e-01	ci left: 7.634825e-03	ci right 8.618074e-03	k: 1055	n:130000
ENKUR   130000 perm   30 sec   (4266 perm/sec)   p_kst 8.115385e-03   p_cons 6.215385e-03   p_joint 3.076923e-04

Joint ci ratio: 5.842631e-01	ci left: 2.283695e-04	ci right 4.218912e-04	k: 44	n:140000
Cons ci ratio: 1.318021e-01	ci left: 5.864585e-03	ci right 6.698919e-03	k: 878	n:140000
KS ci ratio: 1.161410e-01	ci left: 7.602426e-03	ci right 8.546690e-03	k: 1129	n:140000
ENKUR   140000 perm   33 sec   (4192 perm/sec)   p_kst 8.064286e-03   p_cons 6.271429e-03   p_joint 3.142857e-04

Joint ci ratio: 3.918680e-01	ci left: 5.364468e-04	ci right 8.034686e-04	k: 99	n:150000
Cons ci ratio: 1.269797e-01	ci left: 5.912284e-03	ci right 6.720311e-03	k: 946	n:150000
KS ci ratio: 1.119104e-01	ci left: 7.659070e-03	ci right 8.573430e-03	k: 1216	n:150000
ENKUR   150000 perm   36 sec   (4112 perm/sec)   p_kst 8.106667e-03   p_cons 6.306667e-03   p_joint 6.600000e-04

Joint ci ratio: 3.824261e-01	ci left: 5.311270e-04	ci right 7.875296e-04	k: 104	n:160000
Cons ci ratio: 1.225899e-01	ci left: 5.960565e-03	ci right 6.744984e-03	k: 1015	n:160000
KS ci ratio: 1.081944e-01	ci left: 7.697014e-03	ci right 8.583448e-03	k: 1301	n:160000
ENKUR   160000 perm   40 sec   (4041 perm/sec)   p_kst 8.131250e-03   p_cons 6.343750e-03   p_joint 6.500000e-04

Joint ci ratio: 3.880202e-01	ci left: 4.839438e-04	ci right 7.218607e-04	k: 101	n:170000
Cons ci ratio: 1.188466e-01	ci left: 5.980755e-03	ci right 6.742109e-03	k: 1080	n:170000
KS ci ratio: 1.046357e-01	ci left: 7.759584e-03	ci right 8.622021e-03	k: 1391	n:170000
ENKUR   170000 perm   43 sec   (3975 perm/sec)   p_kst 8.182353e-03   p_cons 6.352941e-03   p_joint 5.941176e-04

Joint ci ratio: 3.824402e-01	ci left: 4.721100e-04	ci right 7.000317e-04	k: 104	n:180000
Cons ci ratio: 1.162978e-01	ci left: 5.907302e-03	ci right 6.642069e-03	k: 1128	n:180000
KS ci ratio: 1.018229e-01	ci left: 7.750640e-03	ci right 8.587539e-03	k: 1469	n:180000
ENKUR   180000 perm   46 sec   (3910 perm/sec)   p_kst 8.161111e-03   p_cons 6.266667e-03   p_joint 5.777778e-04

Joint ci ratio: 1.306632e+00	ci left: 1.817823e-05	ci right 8.296246e-05	k: 8	n:190000
Cons ci ratio: 1.248321e-01	ci left: 4.840737e-03	ci right 5.490292e-03	k: 980	n:190000
KS ci ratio: 9.868059e-02	ci left: 7.830191e-03	ci right 8.648077e-03	k: 1564	n:190000
ENKUR   190000 perm   49 sec   (3851 perm/sec)   p_kst 8.231579e-03   p_cons 5.157895e-03   p_joint 4.210526e-05

Joint ci ratio: 5.435342e-01	ci left: 1.898700e-04	ci right 3.352644e-04	k: 51	n:200000
Cons ci ratio: 1.213546e-01	ci left: 4.874930e-03	ci right 5.509542e-03	k: 1037	n:200000
KS ci ratio: 9.651833e-02	ci left: 7.785007e-03	ci right 8.579347e-03	k: 1635	n:200000
ENKUR   200000 perm   53 sec   (3789 perm/sec)   p_kst 8.175000e-03   p_cons 5.185000e-03   p_joint 2.550000e-04

Joint ci ratio: 5.237609e-01	ci left: 1.973084e-04	ci right 3.408916e-04	k: 55	n:210000
Cons ci ratio: 1.187536e-01	ci left: 4.855257e-03	ci right 5.472809e-03	k: 1083	n:210000
KS ci ratio: 9.432521e-02	ci left: 7.772206e-03	ci right 8.546224e-03	k: 1712	n:210000
ENKUR   210000 perm   56 sec   (3730 perm/sec)   p_kst 8.152381e-03   p_cons 5.157143e-03   p_joint 2.619048e-04

Joint ci ratio: 5.059997e-01	ci left: 2.041585e-04	ci right 3.459216e-04	k: 59	n:220000
Cons ci ratio: 1.155445e-01	ci left: 4.903719e-03	ci right 5.509430e-03	k: 1144	n:220000
KS ci ratio: 9.201632e-02	ci left: 7.805170e-03	ci right 8.562419e-03	k: 1799	n:220000
ENKUR   220000 perm   60 sec   (3677 perm/sec)   p_kst 8.177273e-03   p_cons 5.200000e-03   p_joint 2.681818e-04

Joint ci ratio: 4.977723e-01	ci left: 2.028762e-04	ci right 3.406700e-04	k: 61	n:230000
Cons ci ratio: 1.132927e-01	ci left: 4.884787e-03	ci right 5.475615e-03	k: 1190	n:230000
KS ci ratio: 9.028001e-02	ci left: 7.763218e-03	ci right 8.501433e-03	k: 1869	n:230000
ENKUR   230000 perm   64 sec   (3618 perm/sec)   p_kst 8.126087e-03   p_cons 5.173913e-03   p_joint 2.652174e-04

Joint ci ratio: 4.977752e-01	ci left: 1.944228e-04	ci right 3.264759e-04	k: 61	n:240000
Cons ci ratio: 1.113941e-01	ci left: 4.847282e-03	ci right 5.423102e-03	k: 1231	n:240000
KS ci ratio: 8.840897e-02	ci left: 7.765636e-03	ci right 8.487986e-03	k: 1949	n:240000
ENKUR   240000 perm   67 sec   (3564 perm/sec)   p_kst 8.120833e-03   p_cons 5.129167e-03   p_joint 2.541667e-04

Joint ci ratio: 4.824540e-01	ci left: 2.006681e-04	ci right 3.313795e-04	k: 65	n:250000
Cons ci ratio: 1.094152e-01	ci left: 4.828417e-03	ci right 5.391150e-03	k: 1276	n:250000
KS ci ratio: 8.677903e-02	ci left: 7.744522e-03	ci right 8.450953e-03	k: 2023	n:250000
ENKUR   250000 perm   71 sec   (3512 perm/sec)   p_kst 8.092000e-03   p_cons 5.104000e-03   p_joint 2.600000e-04

Joint ci ratio: 4.651540e-01	ci left: 2.098844e-04	ci right 3.401448e-04	k: 70	n:260000
Cons ci ratio: 1.072126e-01	ci left: 4.841034e-03	ci right 5.393163e-03	k: 1329	n:260000
KS ci ratio: 8.527701e-02	ci left: 7.717617e-03	ci right 8.408801e-03	k: 2095	n:260000
ENKUR   260000 perm   75 sec   (3462 perm/sec)   p_kst 8.057692e-03   p_cons 5.111538e-03   p_joint 2.692308e-04

Joint ci ratio: 4.525789e-01	ci left: 2.152130e-04	ci right 3.440629e-04	k: 74	n:270000
Cons ci ratio: 1.050997e-01	ci left: 4.856428e-03	ci right 5.398722e-03	k: 1383	n:270000
KS ci ratio: 8.361740e-02	ci left: 7.736323e-03	ci right 8.415041e-03	k: 2179	n:270000
ENKUR   270000 perm   79 sec   (3412 perm/sec)   p_kst 8.070370e-03   p_cons 5.122222e-03   p_joint 2.740741e-04

Joint ci ratio: 4.382059e-01	ci left: 2.233813e-04	ci right 3.516220e-04	k: 79	n:280000
Cons ci ratio: 1.036151e-01	ci left: 4.822108e-03	ci right 5.352501e-03	k: 1423	n:280000
KS ci ratio: 8.223435e-02	ci left: 7.718828e-03	ci right 8.384273e-03	k: 2253	n:280000
ENKUR   280000 perm   83 sec   (3366 perm/sec)   p_kst 8.046429e-03   p_cons 5.082143e-03   p_joint 2.821429e-04

Joint ci ratio: 4.276444e-01	ci left: 2.279684e-04	ci right 3.547843e-04	k: 83	n:290000
Cons ci ratio: 1.018427e-01	ci left: 4.823813e-03	ci right 5.344774e-03	k: 1473	n:290000
KS ci ratio: 8.034562e-02	ci left: 7.814142e-03	ci right 8.471607e-03	k: 2360	n:290000
ENKUR   290000 perm   87 sec   (3319 perm/sec)   p_kst 8.137931e-03   p_cons 5.079310e-03   p_joint 2.862069e-04

Joint ci ratio: 4.251228e-01	ci left: 2.233449e-04	ci right 3.466475e-04	k: 84	n:300000
Cons ci ratio: 1.002907e-01	ci left: 4.812475e-03	ci right 5.323824e-03	k: 1519	n:300000
KS ci ratio: 7.854918e-02	ci left: 7.909800e-03	ci right 8.559753e-03	k: 2469	n:300000
ENKUR   300000 perm   92 sec   (3276 perm/sec)   p_kst 8.230000e-03   p_cons 5.063333e-03   p_joint 2.800000e-04

Joint ci ratio: 5.060200e-01	ci left: 1.448854e-04	ci right 2.454955e-04	k: 59	n:310000
Cons ci ratio: 9.877578e-02	ci left: 4.805072e-03	ci right 5.307475e-03	k: 1566	n:310000
KS ci ratio: 7.709441e-02	ci left: 7.951977e-03	ci right 8.592751e-03	k: 2563	n:310000
ENKUR   310000 perm   96 sec   (3236 perm/sec)   p_kst 8.267742e-03   p_cons 5.051613e-03   p_joint 1.903226e-04

Joint ci ratio: 5.060216e-01	ci left: 1.403577e-04	ci right 2.378240e-04	k: 59	n:320000
Cons ci ratio: 9.750984e-02	ci left: 4.779890e-03	ci right 5.272889e-03	k: 1607	n:320000
KS ci ratio: 7.566019e-02	ci left: 8.003886e-03	ci right 8.636317e-03	k: 2661	n:320000
ENKUR   320000 perm   100 sec   (3195 perm/sec)   p_kst 8.315625e-03   p_cons 5.021875e-03   p_joint 1.843750e-04

Joint ci ratio: 5.060230e-01	ci left: 1.361043e-04	ci right 2.306174e-04	k: 59	n:330000
Cons ci ratio: 9.623272e-02	ci left: 4.762189e-03	ci right 5.246566e-03	k: 1650	n:330000
KS ci ratio: 7.442560e-02	ci left: 8.025983e-03	ci right 8.649364e-03	k: 2750	n:330000
ENKUR   330000 perm   105 sec   (3157 perm/sec)   p_kst 8.333333e-03   p_cons 5.000000e-03   p_joint 1.787879e-04

Joint ci ratio: 6.625659e-01	ci left: 6.925387e-05	ci right 1.397372e-04	k: 34	n:340000
Cons ci ratio: 9.458454e-02	ci left: 4.788646e-03	ci right 5.266909e-03	k: 1708	n:340000
KS ci ratio: 7.331464e-02	ci left: 8.032421e-03	ci right 8.646591e-03	k: 2834	n:340000
ENKUR   340000 perm   109 sec   (3122 perm/sec)   p_kst 8.335294e-03   p_cons 5.023529e-03   p_joint 1.000000e-04

Joint ci ratio: 6.625669e-01	ci left: 6.727516e-05	ci right 1.357448e-04	k: 34	n:350000
Cons ci ratio: 9.312424e-02	ci left: 4.802493e-03	ci right 5.274331e-03	k: 1762	n:350000
KS ci ratio: 7.238966e-02	ci left: 8.007691e-03	ci right 8.611921e-03	k: 2907	n:350000
ENKUR   350000 perm   113 sec   (3084 perm/sec)   p_kst 8.305714e-03   p_cons 5.034286e-03   p_joint 9.714286e-05

Joint ci ratio: 6.444100e-01	ci left: 7.003972e-05	ci right 1.384395e-04	k: 36	n:360000
Cons ci ratio: 9.172955e-02	ci left: 4.815624e-03	ci right 5.281286e-03	k: 1816	n:360000
KS ci ratio: 7.152302e-02	ci left: 7.978924e-03	ci right 8.573476e-03	k: 2978	n:360000
ENKUR   360000 perm   118 sec   (3046 perm/sec)   p_kst 8.272222e-03   p_cons 5.044444e-03   p_joint 1.000000e-04

Joint ci ratio: 6.197721e-01	ci left: 7.495459e-05	ci right 1.440899e-04	k: 39	n:370000
Cons ci ratio: 9.068846e-02	ci left: 4.796394e-03	ci right 5.254653e-03	k: 1858	n:370000
KS ci ratio: 7.035032e-02	ci left: 8.028761e-03	ci right 8.616816e-03	k: 3078	n:370000
ENKUR   370000 perm   123 sec   (3012 perm/sec)   p_kst 8.318919e-03   p_cons 5.021622e-03   p_joint 1.054054e-04

Joint ci ratio: 5.285337e-01	ci left: 1.067556e-04	ci right 1.854125e-04	k: 54	n:380000
Cons ci ratio: 8.970574e-02	ci left: 4.775632e-03	ci right 5.226704e-03	k: 1899	n:380000
KS ci ratio: 6.937664e-02	ci left: 8.042427e-03	ci right 8.623002e-03	k: 3165	n:380000
ENKUR   380000 perm   128 sec   (2978 perm/sec)   p_kst 8.328947e-03   p_cons 4.997368e-03   p_joint 1.421053e-04

Joint ci ratio: 5.435693e-01	ci left: 9.736778e-05	ci right 1.719338e-04	k: 51	n:390000
Cons ci ratio: 8.859388e-02	ci left: 4.773513e-03	ci right 5.218506e-03	k: 1947	n:390000
KS ci ratio: 6.834703e-02	ci left: 8.078131e-03	ci right 8.652286e-03	k: 3261	n:390000
ENKUR   390000 perm   132 sec   (2945 perm/sec)   p_kst 8.361538e-03   p_cons 4.992308e-03   p_joint 1.307692e-04

Joint ci ratio: 5.657686e-01	ci left: 8.633582e-05	ci right 1.562471e-04	k: 47	n:400000
Cons ci ratio: 8.741239e-02	ci left: 4.783760e-03	ci right 5.223458e-03	k: 2000	n:400000
KS ci ratio: 6.757535e-02	ci left: 8.060489e-03	ci right 8.626668e-03	k: 3336	n:400000
ENKUR   400000 perm   138 sec   (2908 perm/sec)   p_kst 8.340000e-03   p_cons 5.000000e-03   p_joint 1.175000e-04

Joint ci ratio: 5.657695e-01	ci left: 8.423004e-05	ci right 1.524362e-04	k: 47	n:410000
Cons ci ratio: 8.629806e-02	ci left: 4.791158e-03	ci right 5.225639e-03	k: 2052	n:410000
KS ci ratio: 6.668157e-02	ci left: 8.079722e-03	ci right 8.639455e-03	k: 3426	n:410000
ENKUR   410000 perm   143 sec   (2877 perm/sec)   p_kst 8.356098e-03   p_cons 5.004878e-03   p_joint 1.146341e-04

Joint ci ratio: 5.657703e-01	ci left: 8.222453e-05	ci right 1.488069e-04	k: 47	n:420000
Cons ci ratio: 8.524563e-02	ci left: 4.795907e-03	ci right 5.225251e-03	k: 2103	n:420000
KS ci ratio: 6.578463e-02	ci left: 8.107454e-03	ci right 8.661265e-03	k: 3520	n:420000
ENKUR   420000 perm   148 sec   (2847 perm/sec)   p_kst 8.380952e-03   p_cons 5.007143e-03   p_joint 1.119048e-04

Joint ci ratio: 5.543388e-01	ci left: 8.430457e-05	ci right 1.506498e-04	k: 49	n:430000
Cons ci ratio: 8.425045e-02	ci left: 4.798189e-03	ci right 5.222476e-03	k: 2153	n:430000
KS ci ratio: 6.514136e-02	ci left: 8.079030e-03	ci right 8.625300e-03	k: 3590	n:430000
ENKUR   430000 perm   153 sec   (2814 perm/sec)   p_kst 8.348837e-03   p_cons 5.006977e-03   p_joint 1.139535e-04

Joint ci ratio: 5.435735e-01	ci left: 8.630311e-05	ci right 1.523963e-04	k: 51	n:440000
Cons ci ratio: 8.332733e-02	ci left: 4.795944e-03	ci right 5.215160e-03	k: 2201	n:440000
KS ci ratio: 6.438372e-02	ci left: 8.085470e-03	ci right 8.625579e-03	k: 3675	n:440000
ENKUR   440000 perm   158 sec   (2783 perm/sec)   p_kst 8.352273e-03   p_cons 5.002273e-03   p_joint 1.159091e-04

Joint ci ratio: 5.384211e-01	ci left: 8.630358e-05	ci right 1.515330e-04	k: 52	n:450000
Cons ci ratio: 8.261863e-02	ci left: 4.772058e-03	ci right 5.185467e-03	k: 2239	n:450000
KS ci ratio: 6.372885e-02	ci left: 8.071975e-03	ci right 8.605496e-03	k: 3751	n:450000
ENKUR   450000 perm   163 sec   (2754 perm/sec)   p_kst 8.335556e-03   p_cons 4.975556e-03   p_joint 1.155556e-04

Joint ci ratio: 5.237996e-01	ci left: 9.007412e-05	ci right 1.556278e-04	k: 55	n:460000
Cons ci ratio: 8.178350e-02	ci left: 4.766261e-03	ci right 5.174795e-03	k: 2285	n:460000
KS ci ratio: 6.300234e-02	ci left: 8.082632e-03	ci right 8.610545e-03	k: 3838	n:460000
ENKUR   460000 perm   169 sec   (2725 perm/sec)   p_kst 8.343478e-03   p_cons 4.967391e-03   p_joint 1.195652e-04

Joint ci ratio: 5.191846e-01	ci left: 9.000504e-05	ci right 1.547221e-04	k: 56	n:470000
Cons ci ratio: 8.067818e-02	ci left: 4.796174e-03	ci right 5.201455e-03	k: 2348	n:470000
KS ci ratio: 6.221230e-02	ci left: 8.115912e-03	ci right 8.639112e-03	k: 3936	n:470000
ENKUR   470000 perm   174 sec   (2696 perm/sec)   p_kst 8.374468e-03   p_cons 4.995745e-03   p_joint 1.191489e-04

Joint ci ratio: 5.191853e-01	ci left: 8.812991e-05	ci right 1.514987e-04	k: 56	n:480000
Cons ci ratio: 7.961649e-02	ci left: 4.824876e-03	ci right 5.226968e-03	k: 2411	n:480000
KS ci ratio: 6.166740e-02	ci left: 8.090402e-03	ci right 8.607226e-03	k: 4006	n:480000
ENKUR   480000 perm   180 sec   (2669 perm/sec)   p_kst 8.345833e-03   p_cons 5.022917e-03   p_joint 1.166667e-04

Joint ci ratio: 5.191860e-01	ci left: 8.633132e-05	ci right 1.484070e-04	k: 56	n:490000
Cons ci ratio: 7.888446e-02	ci left: 4.816425e-03	ci right 5.213953e-03	k: 2456	n:490000
KS ci ratio: 6.091098e-02	ci left: 8.126250e-03	ci right 8.638772e-03	k: 4106	n:490000
ENKUR   490000 perm   186 sec   (2640 perm/sec)   p_kst 8.379592e-03   p_cons 5.012245e-03   p_joint 1.142857e-04

Joint ci ratio: 5.146908e-01	ci left: 8.634359e-05	ci right 1.476977e-04	k: 57	n:500000
Cons ci ratio: 7.818796e-02	ci left: 4.806367e-03	ci right 5.199403e-03	k: 2500	n:500000
KS ci ratio: 6.039199e-02	ci left: 8.103569e-03	ci right 8.610153e-03	k: 4177	n:500000
ENKUR   500000 perm   191 sec   (2613 perm/sec)   p_kst 8.354000e-03   p_cons 5.000000e-03   p_joint 1.140000e-04

Joint ci ratio: 5.103105e-01	ci left: 8.635763e-05	ci right 1.470141e-04	k: 58	n:510000
Cons ci ratio: 7.738744e-02	ci left: 4.812102e-03	ci right 5.201397e-03	k: 2552	n:510000
KS ci ratio: 5.981510e-02	ci left: 8.101111e-03	ci right 8.602537e-03	k: 4258	n:510000
ENKUR   510000 perm   197 sec   (2585 perm/sec)   p_kst 8.349020e-03   p_cons 5.003922e-03   p_joint 1.137255e-04

Joint ci ratio: 5.018746e-01	ci left: 8.805174e-05	ci right 1.485204e-04	k: 60	n:520000
Cons ci ratio: 7.655197e-02	ci left: 4.825183e-03	ci right 5.211133e-03	k: 2608	n:520000
KS ci ratio: 5.922004e-02	ci left: 8.108245e-03	ci right 8.604949e-03	k: 4344	n:520000
ENKUR   520000 perm   203 sec   (2559 perm/sec)   p_kst 8.353846e-03   p_cons 5.015385e-03   p_joint 1.153846e-04

Joint ci ratio: 5.018752e-01	ci left: 8.639036e-05	ci right 1.457182e-04	k: 60	n:530000
Cons ci ratio: 7.575727e-02	ci left: 4.835940e-03	ci right 5.218558e-03	k: 2663	n:530000
KS ci ratio: 5.867579e-02	ci left: 8.105836e-03	ci right 8.597674e-03	k: 4425	n:530000
ENKUR   530000 perm   209 sec   (2533 perm/sec)   p_kst 8.349057e-03   p_cons 5.024528e-03   p_joint 1.132075e-04

Joint ci ratio: 4.938443e-01	ci left: 8.802896e-05	ci right 1.471850e-04	k: 62	n:540000
Cons ci ratio: 7.500068e-02	ci left: 4.844501e-03	ci right 5.223802e-03	k: 2717	n:540000
KS ci ratio: 5.819186e-02	ci left: 8.090761e-03	ci right 8.577499e-03	k: 4499	n:540000
ENKUR   540000 perm   215 sec   (2508 perm/sec)   p_kst 8.331481e-03   p_cons 5.031481e-03   p_joint 1.148148e-04

Joint ci ratio: 4.899710e-01	ci left: 8.802096e-05	ci right 1.465510e-04	k: 63	n:550000
Cons ci ratio: 7.425285e-02	ci left: 4.854554e-03	ci right 5.230689e-03	k: 2772	n:550000
KS ci ratio: 5.762451e-02	ci left: 8.103133e-03	ci right 8.585704e-03	k: 4588	n:550000
ENKUR   550000 perm   221 sec   (2483 perm/sec)   p_kst 8.341818e-03   p_cons 5.040000e-03   p_joint 1.145455e-04

Joint ci ratio: 5.146941e-01	ci left: 7.709239e-05	ci right 1.318732e-04	k: 57	n:560000
Cons ci ratio: 7.342265e-02	ci left: 4.878291e-03	ci right 5.251858e-03	k: 2835	n:560000
KS ci ratio: 5.711038e-02	ci left: 8.104522e-03	ci right 8.582728e-03	k: 4671	n:560000
ENKUR   560000 perm   228 sec   (2459 perm/sec)   p_kst 8.341071e-03   p_cons 5.062500e-03   p_joint 1.017857e-04

Joint ci ratio: 5.384279e-01	ci left: 6.813421e-05	ci right 1.196318e-04	k: 52	n:570000
Cons ci ratio: 7.275856e-02	ci left: 4.882268e-03	ci right 5.252615e-03	k: 2887	n:570000
KS ci ratio: 5.667591e-02	ci left: 8.086854e-03	ci right 8.560269e-03	k: 4743	n:570000
ENKUR   570000 perm   234 sec   (2435 perm/sec)   p_kst 8.321053e-03   p_cons 5.064912e-03   p_joint 9.122807e-05

Joint ci ratio: 5.334191e-01	ci left: 6.845010e-05	ci right 1.195247e-04	k: 53	n:580000
Cons ci ratio: 7.213683e-02	ci left: 4.882736e-03	ci right 5.249821e-03	k: 2937	n:580000
KS ci ratio: 5.612794e-02	ci left: 8.105511e-03	ci right 8.575281e-03	k: 4836	n:580000
ENKUR   580000 perm   240 sec   (2413 perm/sec)   p_kst 8.337931e-03   p_cons 5.063793e-03   p_joint 9.137931e-05

Joint ci ratio: 4.651900e-01	ci left: 9.249000e-05	ci right 1.498973e-04	k: 70	n:590000
Cons ci ratio: 7.153077e-02	ci left: 4.883201e-03	ci right 5.247109e-03	k: 2987	n:590000
KS ci ratio: 5.564681e-02	ci left: 8.108514e-03	ci right 8.574300e-03	k: 4920	n:590000
ENKUR   590000 perm   247 sec   (2389 perm/sec)   p_kst 8.338983e-03   p_cons 5.062712e-03   p_joint 1.186441e-04

Joint ci ratio: 4.556623e-01	ci left: 9.536842e-05	ci right 1.529752e-04	k: 73	n:600000
Cons ci ratio: 7.092800e-02	ci left: 4.885300e-03	ci right 5.246171e-03	k: 3038	n:600000
KS ci ratio: 5.525583e-02	ci left: 8.088418e-03	ci right 8.549681e-03	k: 4990	n:600000
ENKUR   600000 perm   254 sec   (2366 perm/sec)   p_kst 8.316667e-03   p_cons 5.063333e-03   p_joint 1.216667e-04

Joint ci ratio: 4.466969e-01	ci left: 9.816410e-05	ci right 1.559407e-04	k: 76	n:610000
Cons ci ratio: 7.036311e-02	ci left: 4.884122e-03	ci right 5.241915e-03	k: 3087	n:610000
KS ci ratio: 5.474766e-02	ci left: 8.106186e-03	ci right 8.564076e-03	k: 5083	n:610000
ENKUR   610000 perm   260 sec   (2344 perm/sec)   p_kst 8.332787e-03   p_cons 5.060656e-03   p_joint 1.245902e-04

Joint ci ratio: 4.466974e-01	ci left: 9.658078e-05	ci right 1.534256e-04	k: 76	n:620000
Cons ci ratio: 6.987870e-02	ci left: 4.873484e-03	ci right 5.227939e-03	k: 3130	n:620000
KS ci ratio: 5.425855e-02	ci left: 8.121807e-03	ci right 8.576353e-03	k: 5175	n:620000
ENKUR   620000 perm   267 sec   (2323 perm/sec)   p_kst 8.346774e-03   p_cons 5.048387e-03   p_joint 1.225806e-04

Joint ci ratio: 4.438248e-01	ci left: 9.645703e-05	ci right 1.527545e-04	k: 77	n:630000
Cons ci ratio: 6.940416e-02	ci left: 4.863192e-03	ci right 5.214400e-03	k: 3173	n:630000
KS ci ratio: 5.384419e-02	ci left: 8.118157e-03	ci right 8.568921e-03	k: 5255	n:630000
ENKUR   630000 perm   274 sec   (2301 perm/sec)   p_kst 8.341270e-03   p_cons 5.036508e-03   p_joint 1.222222e-04

Joint ci ratio: 4.438252e-01	ci left: 9.494987e-05	ci right 1.503677e-04	k: 77	n:640000
Cons ci ratio: 6.888537e-02	ci left: 4.860907e-03	ci right 5.209221e-03	k: 3221	n:640000
KS ci ratio: 5.342404e-02	ci left: 8.119259e-03	ci right 8.566458e-03	k: 5338	n:640000
ENKUR   640000 perm   281 sec   (2280 perm/sec)   p_kst 8.340625e-03   p_cons 5.032812e-03   p_joint 1.203125e-04

Joint ci ratio: 4.438256e-01	ci left: 9.348909e-05	ci right 1.480544e-04	k: 77	n:650000
Cons ci ratio: 6.837805e-02	ci left: 4.858703e-03	ci right 5.204193e-03	k: 3269	n:650000
KS ci ratio: 5.297909e-02	ci left: 8.130969e-03	ci right 8.574969e-03	k: 5428	n:650000
ENKUR   650000 perm   288 sec   (2261 perm/sec)   p_kst 8.350769e-03   p_cons 5.029231e-03   p_joint 1.184615e-04

Joint ci ratio: 4.382424e-01	ci left: 9.476633e-05	ci right 1.491759e-04	k: 79	n:660000
Cons ci ratio: 6.786121e-02	ci left: 4.859553e-03	ci right 5.202389e-03	k: 3319	n:660000
KS ci ratio: 5.255949e-02	ci left: 8.137852e-03	ci right 8.578601e-03	k: 5515	n:660000
ENKUR   660000 perm   294 sec   (2241 perm/sec)   p_kst 8.356061e-03   p_cons 5.028788e-03   p_joint 1.196970e-04

Joint ci ratio: 4.718879e-01	ci left: 7.881376e-05	ci right 1.286642e-04	k: 68	n:670000
Cons ci ratio: 6.729574e-02	ci left: 4.869193e-03	ci right 5.209735e-03	k: 3375	n:670000
KS ci ratio: 5.213563e-02	ci left: 8.148962e-03	ci right 8.586648e-03	k: 5605	n:670000
ENKUR   670000 perm   302 sec   (2221 perm/sec)   p_kst 8.365672e-03   p_cons 5.037313e-03   p_joint 1.014925e-04

Joint ci ratio: 4.651938e-01	ci left: 8.024855e-05	ci right 1.300582e-04	k: 70	n:680000
Cons ci ratio: 6.694050e-02	ci left: 4.849638e-03	ci right 5.186953e-03	k: 3411	n:680000
KS ci ratio: 5.179068e-02	ci left: 8.137985e-03	ci right 8.572102e-03	k: 5680	n:680000
ENKUR   680000 perm   309 sec   (2202 perm/sec)   p_kst 8.352941e-03   p_cons 5.016176e-03   p_joint 1.029412e-04

Joint ci ratio: 4.651941e-01	ci left: 7.908551e-05	ci right 1.281733e-04	k: 70	n:690000
Cons ci ratio: 6.641680e-02	ci left: 4.856310e-03	ci right 5.191345e-03	k: 3465	n:690000
KS ci ratio: 5.142996e-02	ci left: 8.134488e-03	ci right 8.565307e-03	k: 5760	n:690000
ENKUR   690000 perm   316 sec   (2183 perm/sec)   p_kst 8.347826e-03   p_cons 5.021739e-03   p_joint 1.014493e-04

Joint ci ratio: 4.619523e-01	ci left: 7.921738e-05	ci right 1.279366e-04	k: 71	n:700000
Cons ci ratio: 6.604679e-02	ci left: 4.841725e-03	ci right 5.173821e-03	k: 3504	n:700000
KS ci ratio: 5.104584e-02	ci left: 8.140975e-03	ci right 8.568823e-03	k: 5847	n:700000
ENKUR   700000 perm   324 sec   (2163 perm/sec)   p_kst 8.352857e-03   p_cons 5.005714e-03   p_joint 1.014286e-04

Joint ci ratio: 4.556667e-01	ci left: 8.059288e-05	ci right 1.292751e-04	k: 73	n:710000
Cons ci ratio: 6.550665e-02	ci left: 4.853879e-03	ci right 5.183982e-03	k: 3562	n:710000
KS ci ratio: 5.059289e-02	ci left: 8.172325e-03	ci right 8.597898e-03	k: 5952	n:710000
ENKUR   710000 perm   331 sec   (2145 perm/sec)   p_kst 8.383099e-03   p_cons 5.016901e-03   p_joint 1.028169e-04

Joint ci ratio: 4.788816e-01	ci left: 7.089568e-05	ci right 1.166210e-04	k: 66	n:720000
Cons ci ratio: 6.494351e-02	ci left: 4.871172e-03	ci right 5.199497e-03	k: 3624	n:720000
KS ci ratio: 5.020613e-02	ci left: 8.184989e-03	ci right 8.607869e-03	k: 6044	n:720000
ENKUR   720000 perm   339 sec   (2127 perm/sec)   p_kst 8.394444e-03   p_cons 5.033333e-03   p_joint 9.166667e-05

Joint ci ratio: 3.519963e-01	ci left: 1.400362e-04	ci right 2.010329e-04	k: 123	n:730000
Cons ci ratio: 6.448258e-02	ci left: 4.874524e-03	ci right 5.200656e-03	k: 3676	n:730000
KS ci ratio: 4.984040e-02	ci left: 8.193260e-03	ci right 8.613395e-03	k: 6133	n:730000
ENKUR   730000 perm   346 sec   (2110 perm/sec)   p_kst 8.401370e-03   p_cons 5.035616e-03   p_joint 1.684932e-04

Joint ci ratio: 3.505856e-01	ci left: 1.393759e-04	ci right 1.997864e-04	k: 124	n:740000
Cons ci ratio: 6.405724e-02	ci left: 4.873804e-03	ci right 5.197657e-03	k: 3725	n:740000
KS ci ratio: 4.957099e-02	ci left: 8.171953e-03	ci right 8.588666e-03	k: 6200	n:740000
ENKUR   740000 perm   353 sec   (2094 perm/sec)   p_kst 8.378378e-03   p_cons 5.033784e-03   p_joint 1.675676e-04

Joint ci ratio: 3.881112e-01	ci left: 1.096895e-04	ci right 1.636298e-04	k: 101	n:750000
Cons ci ratio: 6.355565e-02	ci left: 4.886233e-03	ci right 5.208275e-03	k: 3784	n:750000
KS ci ratio: 4.923861e-02	ci left: 8.173611e-03	ci right 8.587533e-03	k: 6284	n:750000
ENKUR   750000 perm   361 sec   (2076 perm/sec)   p_kst 8.378667e-03   p_cons 5.045333e-03   p_joint 1.346667e-04

Joint ci ratio: 3.881115e-01	ci left: 1.082462e-04	ci right 1.614768e-04	k: 101	n:760000
Cons ci ratio: 6.309042e-02	ci left: 4.894458e-03	ci right 5.214595e-03	k: 3840	n:760000
KS ci ratio: 4.895159e-02	ci left: 8.162235e-03	ci right 8.573104e-03	k: 6358	n:760000
ENKUR   760000 perm   369 sec   (2059 perm/sec)   p_kst 8.365789e-03   p_cons 5.052632e-03   p_joint 1.328947e-04

Joint ci ratio: 3.825265e-01	ci left: 1.103591e-04	ci right 1.636514e-04	k: 104	n:770000
Cons ci ratio: 6.264333e-02	ci left: 4.901200e-03	ci right 5.219424e-03	k: 3895	n:770000
KS ci ratio: 4.858963e-02	ci left: 8.178106e-03	ci right 8.586645e-03	k: 6453	n:770000
ENKUR   770000 perm   377 sec   (2043 perm/sec)   p_kst 8.380519e-03   p_cons 5.058442e-03   p_joint 1.350649e-04

Joint ci ratio: 3.807179e-01	ci left: 1.101033e-04	ci right 1.629578e-04	k: 105	n:780000
Cons ci ratio: 6.218979e-02	ci left: 4.910301e-03	ci right 5.226725e-03	k: 3952	n:780000
KS ci ratio: 4.826159e-02	ci left: 8.184713e-03	ci right 8.590745e-03	k: 6541	n:780000
ENKUR   780000 perm   385 sec   (2026 perm/sec)   p_kst 8.385897e-03   p_cons 5.066667e-03   p_joint 1.346154e-04

Joint ci ratio: 3.807183e-01	ci left: 1.087096e-04	ci right 1.608951e-04	k: 105	n:790000
Cons ci ratio: 6.179245e-02	ci left: 4.911702e-03	ci right 5.226121e-03	k: 4003	n:790000
KS ci ratio: 4.798391e-02	ci left: 8.176153e-03	ci right 8.579363e-03	k: 6617	n:790000
ENKUR   790000 perm   393 sec   (2010 perm/sec)   p_kst 8.375949e-03   p_cons 5.067089e-03   p_joint 1.329114e-04

Joint ci ratio: 3.771765e-01	ci left: 1.096126e-04	ci right 1.616209e-04	k: 107	n:800000
Cons ci ratio: 6.146359e-02	ci left: 4.903227e-03	ci right 5.215374e-03	k: 4046	n:800000
KS ci ratio: 4.763926e-02	ci left: 8.192519e-03	ci right 8.593553e-03	k: 6713	n:800000
ENKUR   800000 perm   401 sec   (1994 perm/sec)   p_kst 8.391250e-03   p_cons 5.057500e-03   p_joint 1.337500e-04

Joint ci ratio: 3.754424e-01	ci left: 1.093772e-04	ci right 1.609764e-04	k: 108	n:810000
Cons ci ratio: 6.113993e-02	ci left: 4.894965e-03	ci right 5.204887e-03	k: 4089	n:810000
KS ci ratio: 4.734402e-02	ci left: 8.193849e-03	ci right 8.592395e-03	k: 6797	n:810000
ENKUR   810000 perm   409 sec   (1978 perm/sec)   p_kst 8.391358e-03   p_cons 5.048148e-03   p_joint 1.333333e-04

Joint ci ratio: 3.720445e-01	ci left: 1.102532e-04	ci right 1.616804e-04	k: 110	n:820000
Cons ci ratio: 6.076962e-02	ci left: 4.895317e-03	ci right 5.203318e-03	k: 4139	n:820000
KS ci ratio: 4.704385e-02	ci left: 8.198770e-03	ci right 8.594959e-03	k: 6884	n:820000
ENKUR   820000 perm   418 sec   (1963 perm/sec)   p_kst 8.395122e-03   p_cons 5.047561e-03   p_joint 1.341463e-04

Joint ci ratio: 3.703800e-01	ci left: 1.100173e-04	ci right 1.610492e-04	k: 111	n:830000
Cons ci ratio: 6.034086e-02	ci left: 4.906346e-03	ci right 5.212787e-03	k: 4198	n:830000
KS ci ratio: 4.682389e-02	ci left: 8.177382e-03	ci right 8.570639e-03	k: 6949	n:830000
ENKUR   830000 perm   426 sec   (1947 perm/sec)   p_kst 8.372289e-03   p_cons 5.057831e-03   p_joint 1.337349e-04

Joint ci ratio: 3.979925e-01	ci left: 9.257275e-05	ci right 1.395607e-04	k: 96	n:840000
Cons ci ratio: 5.994228e-02	ci left: 4.913602e-03	ci right 5.218398e-03	k: 4254	n:840000
KS ci ratio: 4.656683e-02	ci left: 8.170628e-03	ci right 8.561346e-03	k: 7026	n:840000
ENKUR   840000 perm   435 sec   (1933 perm/sec)   p_kst 8.364286e-03   p_cons 5.064286e-03   p_joint 1.142857e-04

Joint ci ratio: 3.491953e-01	ci left: 1.224119e-04	ci right 1.752115e-04	k: 125	n:850000
Cons ci ratio: 5.959319e-02	ci left: 4.913739e-03	ci right 5.216708e-03	k: 4304	n:850000
KS ci ratio: 4.627128e-02	ci left: 8.179157e-03	ci right 8.567734e-03	k: 7116	n:850000
ENKUR   850000 perm   443 sec   (1919 perm/sec)   p_kst 8.371765e-03   p_cons 5.063529e-03   p_joint 1.470588e-04

Joint ci ratio: 3.464563e-01	ci left: 1.231109e-04	ci right 1.757021e-04	k: 127	n:860000
Cons ci ratio: 5.931862e-02	ci left: 4.902422e-03	ci right 5.203252e-03	k: 4344	n:860000
KS ci ratio: 4.598129e-02	ci left: 8.187495e-03	ci right 8.573967e-03	k: 7206	n:860000
ENKUR   860000 perm   451 sec   (1906 perm/sec)   p_kst 8.379070e-03   p_cons 5.051163e-03   p_joint 1.476744e-04

Joint ci ratio: 3.437809e-01	ci left: 1.237955e-04	ci right 1.761798e-04	k: 129	n:870000
Cons ci ratio: 5.898700e-02	ci left: 4.901561e-03	ci right 5.200600e-03	k: 4393	n:870000
KS ci ratio: 4.574095e-02	ci left: 8.179740e-03	ci right 8.563774e-03	k: 7282	n:870000
ENKUR   870000 perm   460 sec   (1893 perm/sec)   p_kst 8.370115e-03   p_cons 5.049425e-03   p_joint 1.482759e-04

Joint ci ratio: 3.424663e-01	ci left: 1.234272e-04	ci right 1.754117e-04	k: 130	n:880000
Cons ci ratio: 5.868079e-02	ci left: 4.897365e-03	ci right 5.194544e-03	k: 4439	n:880000
KS ci ratio: 4.552619e-02	ci left: 8.164301e-03	ci right 8.545764e-03	k: 7351	n:880000
ENKUR   880000 perm   468 sec   (1881 perm/sec)   p_kst 8.353409e-03   p_cons 5.044318e-03   p_joint 1.477273e-04

Joint ci ratio: 3.411667e-01	ci left: 1.230675e-04	ci right 1.746605e-04	k: 131	n:890000
Cons ci ratio: 5.832705e-02	ci left: 4.902125e-03	ci right 5.197740e-03	k: 4493	n:890000
KS ci ratio: 4.523764e-02	ci left: 8.176988e-03	ci right 8.556559e-03	k: 7445	n:890000
ENKUR   890000 perm   477 sec   (1867 perm/sec)   p_kst 8.365169e-03   p_cons 5.048315e-03   p_joint 1.471910e-04

Joint ci ratio: 3.373544e-01	ci left: 1.247495e-04	ci right 1.763360e-04	k: 134	n:900000
Cons ci ratio: 5.804381e-02	ci left: 4.895834e-03	ci right 5.189588e-03	k: 4537	n:900000
KS ci ratio: 4.491548e-02	ci left: 8.203684e-03	ci right 8.581712e-03	k: 7552	n:900000
ENKUR   900000 perm   486 sec   (1853 perm/sec)   p_kst 8.391111e-03   p_cons 5.041111e-03   p_joint 1.488889e-04

Joint ci ratio: 3.348828e-01	ci left: 1.253910e-04	ci right 1.767809e-04	k: 136	n:910000
Cons ci ratio: 5.770140e-02	ci left: 4.900516e-03	ci right 5.192758e-03	k: 4591	n:910000
KS ci ratio: 4.467368e-02	ci left: 8.202635e-03	ci right 8.578527e-03	k: 7634	n:910000
ENKUR   910000 perm   494 sec   (1841 perm/sec)   p_kst 8.389011e-03   p_cons 5.045055e-03   p_joint 1.494505e-04

Joint ci ratio: 3.324648e-01	ci left: 1.260198e-04	ci right 1.772147e-04	k: 138	n:920000
Cons ci ratio: 5.738982e-02	ci left: 4.900815e-03	ci right 5.191445e-03	k: 4641	n:920000
KS ci ratio: 4.437200e-02	ci left: 8.225263e-03	ci right 8.599582e-03	k: 7738	n:920000
ENKUR   920000 perm   503 sec   (1828 perm/sec)   p_kst 8.410870e-03   p_cons 5.044565e-03   p_joint 1.500000e-04

Joint ci ratio: 3.300983e-01	ci left: 1.266365e-04	ci right 1.776379e-04	k: 140	n:930000
Cons ci ratio: 5.719974e-02	ci left: 4.880973e-03	ci right 5.169435e-03	k: 4672	n:930000
KS ci ratio: 4.414168e-02	ci left: 8.222952e-03	ci right 8.595174e-03	k: 7819	n:930000
ENKUR   930000 perm   512 sec   (1816 perm/sec)   p_kst 8.407527e-03   p_cons 5.023656e-03   p_joint 1.505376e-04

Joint ci ratio: 3.277818e-01	ci left: 1.272413e-04	ci right 1.780509e-04	k: 142	n:940000
Cons ci ratio: 5.682970e-02	ci left: 4.893017e-03	ci right 5.180259e-03	k: 4733	n:940000
KS ci ratio: 4.393453e-02	ci left: 8.213329e-03	ci right 8.583327e-03	k: 7893	n:940000
ENKUR   940000 perm   521 sec   (1803 perm/sec)   p_kst 8.396809e-03   p_cons 5.035106e-03   p_joint 1.510638e-04

Joint ci ratio: 3.255133e-01	ci left: 1.278345e-04	ci right 1.784539e-04	k: 144	n:950000
Cons ci ratio: 5.656167e-02	ci left: 4.888208e-03	ci right 5.173770e-03	k: 4778	n:950000
KS ci ratio: 4.364199e-02	ci left: 8.237233e-03	ci right 8.605774e-03	k: 7999	n:950000
ENKUR   950000 perm   531 sec   (1791 perm/sec)   p_kst 8.420000e-03   p_cons 5.029474e-03   p_joint 1.515789e-04

Joint ci ratio: 3.243967e-01	ci left: 1.274596e-04	ci right 1.777214e-04	k: 145	n:960000
Cons ci ratio: 5.626224e-02	ci left: 4.889665e-03	ci right 5.173751e-03	k: 4829	n:960000
KS ci ratio: 4.342008e-02	ci left: 8.235915e-03	ci right 8.602477e-03	k: 8081	n:960000
ENKUR   960000 perm   540 sec   (1778 perm/sec)   p_kst 8.417708e-03   p_cons 5.030208e-03   p_joint 1.510417e-04

Joint ci ratio: 3.232915e-01	ci left: 1.270927e-04	ci right 1.770037e-04	k: 146	n:970000
Cons ci ratio: 5.599635e-02	ci left: 4.886013e-03	ci right 5.168502e-03	k: 4875	n:970000
KS ci ratio: 4.322021e-02	ci left: 8.227490e-03	ci right 8.591950e-03	k: 8156	n:970000
ENKUR   970000 perm   549 sec   (1767 perm/sec)   p_kst 8.408247e-03   p_cons 5.025773e-03   p_joint 1.505155e-04

Joint ci ratio: 3.232917e-01	ci left: 1.257958e-04	ci right 1.751975e-04	k: 146	n:980000
Cons ci ratio: 5.572281e-02	ci left: 4.884451e-03	ci right 5.165426e-03	k: 4923	n:980000
KS ci ratio: 4.304945e-02	ci left: 8.209145e-03	ci right 8.571320e-03	k: 8221	n:980000
ENKUR   980000 perm   558 sec   (1755 perm/sec)   p_kst 8.388776e-03   p_cons 5.023469e-03   p_joint 1.489796e-04

Joint ci ratio: 3.221978e-01	ci left: 1.254535e-04	ci right 1.745195e-04	k: 147	n:990000
Cons ci ratio: 5.542524e-02	ci left: 4.887905e-03	ci right 5.167528e-03	k: 4976	n:990000
KS ci ratio: 4.281043e-02	ci left: 8.218157e-03	ci right 8.578667e-03	k: 8313	n:990000
ENKUR   990000 perm   568 sec   (1742 perm/sec)   p_kst 8.396970e-03   p_cons 5.026263e-03   p_joint 1.484848e-04

Joint ci ratio: 3.221980e-01	ci left: 1.241989e-04	ci right 1.727743e-04	k: 147	n:1000000
Cons ci ratio: 5.513239e-02	ci left: 4.891293e-03	ci right 5.169585e-03	k: 5029	n:1000000
KS ci ratio: 4.256513e-02	ci left: 8.230952e-03	ci right 8.589904e-03	k: 8409	n:1000000
ENKUR   1000000 perm   578 sec   (1731 perm/sec)   p_kst 8.409000e-03   p_cons 5.029000e-03   p_joint 1.470000e-04

Joint ci ratio: 3.211151e-01	ci left: 1.238794e-04	ci right 1.721335e-04	k: 148	n:1010000
Cons ci ratio: 5.488757e-02	ci left: 4.886806e-03	ci right 5.163569e-03	k: 5074	n:1010000
KS ci ratio: 4.236671e-02	ci left: 8.226845e-03	ci right 8.583904e-03	k: 8488	n:1010000
ENKUR   1010000 perm   587 sec   (1720 perm/sec)   p_kst 8.403960e-03   p_cons 5.023762e-03   p_joint 1.465347e-04

Joint ci ratio: 3.200430e-01	ci left: 1.235664e-04	ci right 1.715049e-04	k: 149	n:1020000
Cons ci ratio: 5.461382e-02	ci left: 4.888212e-03	ci right 5.163630e-03	k: 5125	n:1020000
KS ci ratio: 4.213634e-02	ci left: 8.236403e-03	ci right 8.591887e-03	k: 8581	n:1020000
ENKUR   1020000 perm   597 sec   (1709 perm/sec)   p_kst 8.412745e-03   p_cons 5.024510e-03   p_joint 1.460784e-04

Joint ci ratio: 3.200432e-01	ci left: 1.223667e-04	ci right 1.698398e-04	k: 149	n:1030000
Cons ci ratio: 5.434412e-02	ci left: 4.889594e-03	ci right 5.163687e-03	k: 5176	n:1030000
KS ci ratio: 4.191944e-02	ci left: 8.241939e-03	ci right 8.595786e-03	k: 8670	n:1030000
ENKUR   1030000 perm   607 sec   (1697 perm/sec)   p_kst 8.417476e-03   p_cons 5.025243e-03   p_joint 1.446602e-04

Joint ci ratio: 3.189818e-01	ci left: 1.220745e-04	ci right 1.692452e-04	k: 150	n:1040000
Cons ci ratio: 5.406280e-02	ci left: 4.893798e-03	ci right 5.166662e-03	k: 5230	n:1040000
KS ci ratio: 4.173950e-02	ci left: 8.234050e-03	ci right 8.586004e-03	k: 8745	n:1040000
ENKUR   1040000 perm   617 sec   (1686 perm/sec)   p_kst 8.408654e-03   p_cons 5.028846e-03   p_joint 1.442308e-04

Joint ci ratio: 3.168900e-01	ci left: 1.226647e-04	ci right 1.696895e-04	k: 152	n:1050000
Cons ci ratio: 5.381139e-02	ci left: 4.893228e-03	ci right 5.164752e-03	k: 5279	n:1050000
KS ci ratio: 4.154524e-02	ci left: 8.232912e-03	ci right 8.583141e-03	k: 8827	n:1050000
ENKUR   1050000 perm   627 sec   (1674 perm/sec)   p_kst 8.406667e-03   p_cons 5.027619e-03   p_joint 1.447619e-04

Joint ci ratio: 3.158595e-01	ci left: 1.223760e-04	ci right 1.691068e-04	k: 153	n:1060000
Cons ci ratio: 5.351805e-02	ci left: 4.901048e-03	ci right 5.171478e-03	k: 5337	n:1060000
KS ci ratio: 4.136537e-02	ci left: 8.227131e-03	ci right 8.575563e-03	k: 8904	n:1060000
ENKUR   1060000 perm   637 sec   (1663 perm/sec)   p_kst 8.400000e-03   p_cons 5.034906e-03   p_joint 1.443396e-04

Joint ci ratio: 3.158597e-01	ci left: 1.212323e-04	ci right 1.675263e-04	k: 153	n:1070000
Cons ci ratio: 5.322946e-02	ci left: 4.908727e-03	ci right 5.178075e-03	k: 5395	n:1070000
KS ci ratio: 4.119707e-02	ci left: 8.217761e-03	ci right 8.564347e-03	k: 8977	n:1070000
ENKUR   1070000 perm   648 sec   (1652 perm/sec)   p_kst 8.389720e-03   p_cons 5.042056e-03   p_joint 1.429907e-04

Joint ci ratio: 3.138284e-01	ci left: 1.218153e-04	ci right 1.679729e-04	k: 155	n:1080000
Cons ci ratio: 5.297967e-02	ci left: 4.909871e-03	ci right 5.177979e-03	k: 5446	n:1080000
KS ci ratio: 4.100797e-02	ci left: 8.217733e-03	ci right 8.562689e-03	k: 9060	n:1080000
ENKUR   1080000 perm   658 sec   (1642 perm/sec)   p_kst 8.388889e-03   p_cons 5.042593e-03   p_joint 1.435185e-04

Joint ci ratio: 3.118357e-01	ci left: 1.223886e-04	ci right 1.684103e-04	k: 157	n:1090000
Cons ci ratio: 5.269484e-02	ci left: 4.918240e-03	ci right 5.185318e-03	k: 5505	n:1090000
KS ci ratio: 4.082821e-02	ci left: 8.214984e-03	ci right 8.558278e-03	k: 9140	n:1090000
ENKUR   1090000 perm   668 sec   (1632 perm/sec)   p_kst 8.385321e-03   p_cons 5.050459e-03   p_joint 1.440367e-04

Joint ci ratio: 3.098805e-01	ci left: 1.229523e-04	ci right 1.688388e-04	k: 159	n:1100000
Cons ci ratio: 5.241456e-02	ci left: 4.926461e-03	ci right 5.192519e-03	k: 5564	n:1100000
KS ci ratio: 4.067303e-02	ci left: 8.203290e-03	ci right 8.544761e-03	k: 9210	n:1100000
ENKUR   1100000 perm   678 sec   (1623 perm/sec)   p_kst 8.372727e-03   p_cons 5.058182e-03   p_joint 1.445455e-04

Joint ci ratio: 3.089167e-01	ci left: 1.226756e-04	ci right 1.682884e-04	k: 160	n:1110000
Cons ci ratio: 5.218068e-02	ci left: 4.926535e-03	ci right 5.191374e-03	k: 5614	n:1110000
KS ci ratio: 4.050641e-02	ci left: 8.197159e-03	ci right 8.536945e-03	k: 9286	n:1110000
ENKUR   1110000 perm   688 sec   (1613 perm/sec)   p_kst 8.365766e-03   p_cons 5.057658e-03   p_joint 1.441441e-04

Joint ci ratio: 3.060780e-01	ci left: 1.240522e-04	ci right 1.696704e-04	k: 163	n:1120000
Cons ci ratio: 5.192688e-02	ci left: 4.931016e-03	ci right 5.194768e-03	k: 5669	n:1120000
KS ci ratio: 4.030277e-02	ci left: 8.207052e-03	ci right 8.545498e-03	k: 9380	n:1120000
ENKUR   1120000 perm   698 sec   (1604 perm/sec)   p_kst 8.375000e-03   p_cons 5.061607e-03   p_joint 1.455357e-04

Joint ci ratio: 3.042285e-01	ci left: 1.245888e-04	ci right 1.700739e-04	k: 165	n:1130000
Cons ci ratio: 5.166315e-02	ci left: 4.938042e-03	ci right 5.200788e-03	k: 5727	n:1130000
KS ci ratio: 4.013635e-02	ci left: 8.202755e-03	ci right 8.539595e-03	k: 9458	n:1130000
ENKUR   1130000 perm   708 sec   (1595 perm/sec)   p_kst 8.369912e-03   p_cons 5.068142e-03   p_joint 1.460177e-04

Joint ci ratio: 3.015160e-01	ci left: 1.259276e-04	ci right 1.714129e-04	k: 168	n:1140000
Cons ci ratio: 5.142573e-02	ci left: 4.940618e-03	ci right 5.202257e-03	k: 5780	n:1140000
KS ci ratio: 3.996354e-02	ci left: 8.202011e-03	ci right 8.537336e-03	k: 9540	n:1140000
ENKUR   1140000 perm   719 sec   (1586 perm/sec)   p_kst 8.368421e-03   p_cons 5.070175e-03   p_joint 1.473684e-04

Joint ci ratio: 3.015162e-01	ci left: 1.248325e-04	ci right 1.699224e-04	k: 168	n:1150000
Cons ci ratio: 5.124897e-02	ci left: 4.931991e-03	ci right 5.192250e-03	k: 5820	n:1150000
KS ci ratio: 3.980754e-02	ci left: 8.195255e-03	ci right 8.528967e-03	k: 9615	n:1150000
ENKUR   1150000 perm   729 sec   (1577 perm/sec)   p_kst 8.360870e-03   p_cons 5.060870e-03   p_joint 1.460870e-04

Joint ci ratio: 3.301033e-01	ci left: 1.015273e-04	ci right 1.424170e-04	k: 140	n:1160000
Cons ci ratio: 5.100410e-02	ci left: 4.937133e-03	ci right 5.196382e-03	k: 5876	n:1160000
KS ci ratio: 3.962861e-02	ci left: 8.198862e-03	ci right 8.531186e-03	k: 9702	n:1160000
ENKUR   1160000 perm   740 sec   (1568 perm/sec)   p_kst 8.363793e-03   p_cons 5.065517e-03   p_joint 1.206897e-04

Joint ci ratio: 3.289390e-01	ci left: 1.014435e-04	ci right 1.421249e-04	k: 141	n:1170000
Cons ci ratio: 5.070690e-02	ci left: 4.953161e-03	ci right 5.211691e-03	k: 5945	n:1170000
KS ci ratio: 3.946224e-02	ci left: 8.198179e-03	ci right 8.529048e-03	k: 9784	n:1170000
ENKUR   1170000 perm   751 sec   (1557 perm/sec)   p_kst 8.362393e-03   p_cons 5.081197e-03   p_joint 1.205128e-04

Joint ci ratio: 3.277869e-01	ci left: 1.013614e-04	ci right 1.418375e-04	k: 142	n:1180000
Cons ci ratio: 5.049929e-02	ci left: 4.952185e-03	ci right 5.209575e-03	k: 5994	n:1180000
KS ci ratio: 3.930599e-02	ci left: 8.194153e-03	ci right 8.523521e-03	k: 9862	n:1180000
ENKUR   1180000 perm   762 sec   (1548 perm/sec)   p_kst 8.357627e-03   p_cons 5.079661e-03   p_joint 1.203390e-04

Joint ci ratio: 3.232960e-01	ci left: 1.035964e-04	ci right 1.442806e-04	k: 146	n:1190000
Cons ci ratio: 5.034027e-02	ci left: 4.942100e-03	ci right 5.198133e-03	k: 6032	n:1190000
KS ci ratio: 3.909213e-02	ci left: 8.215163e-03	ci right 8.543539e-03	k: 9970	n:1190000
ENKUR   1190000 perm   774 sec   (1537 perm/sec)   p_kst 8.378151e-03   p_cons 5.068908e-03   p_joint 1.226891e-04

Joint ci ratio: 3.189849e-01	ci left: 1.057978e-04	ci right 1.466794e-04	k: 150	n:1200000
Cons ci ratio: 5.012469e-02	ci left: 4.943705e-03	ci right 5.198693e-03	k: 6084	n:1200000
KS ci ratio: 3.889341e-02	ci left: 8.230876e-03	ci right 8.558170e-03	k: 10072	n:1200000
ENKUR   1200000 perm   785 sec   (1528 perm/sec)   p_kst 8.393333e-03   p_cons 5.070000e-03   p_joint 1.250000e-04

Joint ci ratio: 3.168930e-01	ci left: 1.064444e-04	ci right 1.472515e-04	k: 152	n:1210000
Cons ci ratio: 4.988735e-02	ci left: 4.950183e-03	ci right 5.204261e-03	k: 6142	n:1210000
KS ci ratio: 3.874764e-02	ci left: 8.225052e-03	ci right 8.550861e-03	k: 10148	n:1210000
ENKUR   1210000 perm   797 sec   (1519 perm/sec)   p_kst 8.386777e-03   p_cons 5.076033e-03   p_joint 1.256198e-04

Joint ci ratio: 3.158625e-01	ci left: 1.063265e-04	ci right 1.469291e-04	k: 153	n:1220000
Cons ci ratio: 4.968557e-02	ci left: 4.950081e-03	ci right 5.203097e-03	k: 6192	n:1220000
KS ci ratio: 3.855978e-02	ci left: 8.237998e-03	ci right 8.562703e-03	k: 10247	n:1220000
ENKUR   1220000 perm   808 sec   (1511 perm/sec)   p_kst 8.399180e-03   p_cons 5.075410e-03   p_joint 1.254098e-04

Joint ci ratio: 3.148420e-01	ci left: 1.062108e-04	ci right 1.466117e-04	k: 154	n:1230000
Cons ci ratio: 4.943848e-02	ci left: 4.959619e-03	ci right 5.211826e-03	k: 6254	n:1230000
KS ci ratio: 3.840459e-02	ci left: 8.237853e-03	ci right 8.561216e-03	k: 10330	n:1230000
ENKUR   1230000 perm   818 sec   (1503 perm/sec)   p_kst 8.398374e-03   p_cons 5.084553e-03   p_joint 1.252033e-04

Joint ci ratio: 3.108562e-01	ci left: 1.083268e-04	ci right 1.489075e-04	k: 158	n:1240000
Cons ci ratio: 4.924601e-02	ci left: 4.958650e-03	ci right 5.209799e-03	k: 6303	n:1240000
KS ci ratio: 3.824200e-02	ci left: 8.241707e-03	ci right 8.563822e-03	k: 10418	n:1240000
ENKUR   1240000 perm   829 sec   (1495 perm/sec)   p_kst 8.401613e-03   p_cons 5.083065e-03   p_joint 1.274194e-04

Joint ci ratio: 3.089193e-01	ci left: 1.089358e-04	ci right 1.494403e-04	k: 160	n:1250000
Cons ci ratio: 4.909461e-02	ci left: 4.949797e-03	ci right 5.199705e-03	k: 6342	n:1250000
KS ci ratio: 3.807780e-02	ci left: 8.247086e-03	ci right 8.567998e-03	k: 10508	n:1250000
ENKUR   1250000 perm   841 sec   (1487 perm/sec)   p_kst 8.406400e-03   p_cons 5.073600e-03   p_joint 1.280000e-04

Joint ci ratio: 3.060805e-01	ci left: 1.102685e-04	ci right 1.508183e-04	k: 163	n:1260000
Cons ci ratio: 4.889074e-02	ci left: 4.952061e-03	ci right 5.201016e-03	k: 6395	n:1260000
KS ci ratio: 3.792292e-02	ci left: 8.249239e-03	ci right 8.568900e-03	k: 10594	n:1260000
ENKUR   1260000 perm   852 sec   (1479 perm/sec)   p_kst 8.407937e-03   p_cons 5.075397e-03   p_joint 1.293651e-04

Joint ci ratio: 3.051516e-01	ci left: 1.101273e-04	ci right 1.504784e-04	k: 164	n:1270000
Cons ci ratio: 4.869697e-02	ci left: 4.952736e-03	ci right 5.200710e-03	k: 6446	n:1270000
KS ci ratio: 3.775565e-02	ci left: 8.257600e-03	ci right 8.576144e-03	k: 10688	n:1270000
ENKUR   1270000 perm   863 sec   (1471 perm/sec)   p_kst 8.415748e-03   p_cons 5.075591e-03   p_joint 1.291339e-04

Joint ci ratio: 2.685715e-01	ci left: 1.440805e-04	ci right 1.894820e-04	k: 212	n:1280000
Cons ci ratio: 4.843810e-02	ci left: 4.967296e-03	ci right 5.214640e-03	k: 6515	n:1280000
KS ci ratio: 3.759234e-02	ci left: 8.265060e-03	ci right 8.582482e-03	k: 10781	n:1280000
ENKUR   1280000 perm   874 sec   (1464 perm/sec)   p_kst 8.422656e-03   p_cons 5.089844e-03   p_joint 1.656250e-04

Joint ci ratio: 2.685717e-01	ci left: 1.429636e-04	ci right 1.880131e-04	k: 212	n:1290000
Cons ci ratio: 4.825334e-02	ci left: 4.967080e-03	ci right 5.213444e-03	k: 6565	n:1290000
KS ci ratio: 3.747285e-02	ci left: 8.253976e-03	ci right 8.569943e-03	k: 10850	n:1290000
ENKUR   1290000 perm   886 sec   (1456 perm/sec)   p_kst 8.410853e-03   p_cons 5.089147e-03   p_joint 1.643411e-04

Joint ci ratio: 2.685719e-01	ci left: 1.418639e-04	ci right 1.865669e-04	k: 212	n:1300000
Cons ci ratio: 4.805243e-02	ci left: 4.970671e-03	ci right 5.216158e-03	k: 6620	n:1300000
KS ci ratio: 3.735449e-02	ci left: 8.243063e-03	ci right 8.557594e-03	k: 10919	n:1300000
ENKUR   1300000 perm   898 sec   (1448 perm/sec)   p_kst 8.399231e-03   p_cons 5.092308e-03   p_joint 1.630769e-04

Joint ci ratio: 2.679437e-01	ci left: 1.414929e-04	ci right 1.859573e-04	k: 213	n:1310000
Cons ci ratio: 4.785400e-02	ci left: 4.974208e-03	ci right 5.218827e-03	k: 6675	n:1310000
KS ci ratio: 3.721676e-02	ci left: 8.241395e-03	ci right 8.554678e-03	k: 11000	n:1310000
ENKUR   1310000 perm   910 sec   (1440 perm/sec)   p_kst 8.396947e-03   p_cons 5.095420e-03   p_joint 1.625954e-04

Joint ci ratio: 2.673199e-01	ci left: 1.411278e-04	ci right 1.853568e-04	k: 214	n:1320000
Cons ci ratio: 4.766870e-02	ci left: 4.975448e-03	ci right 5.219155e-03	k: 6727	n:1320000
KS ci ratio: 3.708561e-02	ci left: 8.237501e-03	ci right 8.549510e-03	k: 11078	n:1320000
ENKUR   1320000 perm   922 sec   (1432 perm/sec)   p_kst 8.392424e-03   p_cons 5.096212e-03   p_joint 1.621212e-04

Joint ci ratio: 2.654740e-01	ci left: 1.421717e-04	ci right 1.863691e-04	k: 217	n:1330000
Cons ci ratio: 4.749257e-02	ci left: 4.975186e-03	ci right 5.217955e-03	k: 6777	n:1330000
KS ci ratio: 3.692413e-02	ci left: 8.247824e-03	ci right 8.558834e-03	k: 11175	n:1330000
ENKUR   1330000 perm   934 sec   (1424 perm/sec)   p_kst 8.402256e-03   p_cons 5.095489e-03   p_joint 1.631579e-04

Joint ci ratio: 2.636659e-01	ci left: 1.432010e-04	ci right 1.873652e-04	k: 220	n:1340000
Cons ci ratio: 4.730793e-02	ci left: 4.977141e-03	ci right 5.219035e-03	k: 6830	n:1340000
KS ci ratio: 3.679604e-02	ci left: 8.243945e-03	ci right 8.553708e-03	k: 11253	n:1340000
ENKUR   1340000 perm   946 sec   (1416 perm/sec)   p_kst 8.397761e-03   p_cons 5.097015e-03   p_joint 1.641791e-04

Joint ci ratio: 2.636661e-01	ci left: 1.421403e-04	ci right 1.859773e-04	k: 220	n:1350000
Cons ci ratio: 4.713232e-02	ci left: 4.977605e-03	ci right 5.218600e-03	k: 6881	n:1350000
KS ci ratio: 3.666437e-02	ci left: 8.242328e-03	ci right 8.550898e-03	k: 11334	n:1350000
ENKUR   1350000 perm   959 sec   (1408 perm/sec)   p_kst 8.395556e-03   p_cons 5.097037e-03   p_joint 1.629630e-04

Joint ci ratio: 2.624810e-01	ci left: 1.424688e-04	ci right 1.861772e-04	k: 222	n:1360000
Cons ci ratio: 4.693483e-02	ci left: 4.983151e-03	ci right 5.223376e-03	k: 6939	n:1360000
KS ci ratio: 3.652443e-02	ci left: 8.245108e-03	ci right 8.552580e-03	k: 11421	n:1360000
ENKUR   1360000 perm   971 sec   (1401 perm/sec)   p_kst 8.397794e-03   p_cons 5.102206e-03   p_joint 1.632353e-04

Joint ci ratio: 2.624812e-01	ci left: 1.414288e-04	ci right 1.848182e-04	k: 222	n:1370000
Cons ci ratio: 4.675660e-02	ci left: 4.985011e-03	ci right 5.224388e-03	k: 6992	n:1370000
KS ci ratio: 3.640203e-02	ci left: 8.240616e-03	ci right 8.546869e-03	k: 11498	n:1370000
ENKUR   1370000 perm   983 sec   (1393 perm/sec)   p_kst 8.392701e-03   p_cons 5.103650e-03   p_joint 1.620438e-04

Joint ci ratio: 2.601580e-01	ci left: 1.431127e-04	ci right 1.865669e-04	k: 226	n:1380000
Cons ci ratio: 4.659700e-02	ci left: 4.983264e-03	ci right 5.221719e-03	k: 7040	n:1380000
KS ci ratio: 3.627769e-02	ci left: 8.237627e-03	ci right 8.542702e-03	k: 11577	n:1380000
ENKUR   1380000 perm   996 sec   (1385 perm/sec)   p_kst 8.389130e-03   p_cons 5.101449e-03   p_joint 1.637681e-04

Joint ci ratio: 2.590195e-01	ci left: 1.434284e-04	ci right 1.867570e-04	k: 228	n:1390000
Cons ci ratio: 4.644891e-02	ci left: 4.979411e-03	ci right 5.216903e-03	k: 7085	n:1390000
KS ci ratio: 3.613743e-02	ci left: 8.242526e-03	ci right 8.546578e-03	k: 11667	n:1390000
ENKUR   1390000 perm   1009 sec   (1378 perm/sec)   p_kst 8.393525e-03   p_cons 5.097122e-03   p_joint 1.640288e-04

Joint ci ratio: 2.584558e-01	ci left: 1.430718e-04	ci right 1.861835e-04	k: 229	n:1400000
Cons ci ratio: 4.629570e-02	ci left: 4.977025e-03	ci right 5.213601e-03	k: 7132	n:1400000
KS ci ratio: 3.601423e-02	ci left: 8.240278e-03	ci right 8.543189e-03	k: 11747	n:1400000
ENKUR   1400000 perm   1022 sec   (1370 perm/sec)   p_kst 8.390714e-03   p_cons 5.094286e-03   p_joint 1.635714e-04

Joint ci ratio: 2.562371e-01	ci left: 1.447111e-04	ci right 1.878825e-04	k: 233	n:1410000
Cons ci ratio: 4.614722e-02	ci left: 4.973974e-03	ci right 5.209626e-03	k: 7178	n:1410000
KS ci ratio: 3.586171e-02	ci left: 8.252122e-03	ci right 8.554157e-03	k: 11847	n:1410000
ENKUR   1410000 perm   1034 sec   (1363 perm/sec)   p_kst 8.402128e-03   p_cons 5.090780e-03   p_joint 1.652482e-04

Joint ci ratio: 2.562372e-01	ci left: 1.436920e-04	ci right 1.865594e-04	k: 233	n:1420000
Cons ci ratio: 4.602257e-02	ci left: 4.966094e-03	ci right 5.200720e-03	k: 7217	n:1420000
KS ci ratio: 3.576247e-02	ci left: 8.240071e-03	ci right 8.540813e-03	k: 11913	n:1420000
ENKUR   1420000 perm   1048 sec   (1355 perm/sec)   p_kst 8.389437e-03   p_cons 5.082394e-03   p_joint 1.640845e-04

Joint ci ratio: 2.562374e-01	ci left: 1.426871e-04	ci right 1.852548e-04	k: 233	n:1430000
Cons ci ratio: 4.584499e-02	ci left: 4.970077e-03	ci right 5.203962e-03	k: 7273	n:1430000
KS ci ratio: 3.562060e-02	ci left: 8.248289e-03	ci right 8.548113e-03	k: 12008	n:1430000
ENKUR   1430000 perm   1061 sec   (1348 perm/sec)   p_kst 8.397203e-03   p_cons 5.086014e-03   p_joint 1.629371e-04

Joint ci ratio: 2.562375e-01	ci left: 1.416962e-04	ci right 1.839683e-04	k: 233	n:1440000
Cons ci ratio: 4.570079e-02	ci left: 4.967142e-03	ci right 5.200133e-03	k: 7319	n:1440000
KS ci ratio: 3.548631e-02	ci left: 8.253642e-03	ci right 8.552507e-03	k: 12099	n:1440000
ENKUR   1440000 perm   1074 sec   (1340 perm/sec)   p_kst 8.402083e-03   p_cons 5.082639e-03   p_joint 1.618056e-04

Joint ci ratio: 2.556918e-01	ci left: 1.413644e-04	ci right 1.834334e-04	k: 234	n:1450000
Cons ci ratio: 4.555173e-02	ci left: 4.965611e-03	ci right 5.197752e-03	k: 7367	n:1450000
KS ci ratio: 3.537989e-02	ci left: 8.246619e-03	ci right 8.544315e-03	k: 12172	n:1450000
ENKUR   1450000 perm   1087 sec   (1334 perm/sec)   p_kst 8.394483e-03   p_cons 5.080690e-03   p_joint 1.613793e-04

Joint ci ratio: 2.551496e-01	ci left: 1.410372e-04	ci right 1.829057e-04	k: 235	n:1460000
Cons ci ratio: 4.540720e-02	ci left: 4.963426e-03	ci right 5.194709e-03	k: 7414	n:1460000
KS ci ratio: 3.526860e-02	ci left: 8.242409e-03	ci right 8.538998e-03	k: 12249	n:1460000
ENKUR   1460000 perm   1101 sec   (1327 perm/sec)   p_kst 8.389726e-03   p_cons 5.078082e-03   p_joint 1.609589e-04

Joint ci ratio: 2.551497e-01	ci left: 1.400778e-04	ci right 1.816614e-04	k: 235	n:1470000
Cons ci ratio: 4.526098e-02	ci left: 4.961944e-03	ci right 5.192394e-03	k: 7462	n:1470000
KS ci ratio: 3.514973e-02	ci left: 8.242304e-03	ci right 8.537869e-03	k: 12332	n:1470000
ENKUR   1470000 perm   1114 sec   (1319 perm/sec)   p_kst 8.389116e-03   p_cons 5.076190e-03   p_joint 1.598639e-04

Joint ci ratio: 2.530143e-01	ci left: 1.416619e-04	ci right 1.833084e-04	k: 239	n:1480000
Cons ci ratio: 4.511013e-02	ci left: 4.961819e-03	ci right 5.191475e-03	k: 7512	n:1480000
KS ci ratio: 3.504630e-02	ci left: 8.235503e-03	ci right 8.529939e-03	k: 12405	n:1480000
ENKUR   1480000 perm   1128 sec   (1312 perm/sec)   p_kst 8.381757e-03   p_cons 5.075676e-03   p_joint 1.614865e-04

Joint ci ratio: 2.519666e-01	ci left: 1.419685e-04	ci right 1.835052e-04	k: 241	n:1490000
Cons ci ratio: 4.495182e-02	ci left: 4.963689e-03	ci right 5.192604e-03	k: 7565	n:1490000
KS ci ratio: 3.491556e-02	ci left: 8.242102e-03	ci right 8.535652e-03	k: 12498	n:1490000
ENKUR   1490000 perm   1141 sec   (1305 perm/sec)   p_kst 8.387919e-03   p_cons 5.077181e-03   p_joint 1.617450e-04

Joint ci ratio: 2.504191e-01	ci left: 1.428962e-04	ci right 1.844075e-04	k: 244	n:1500000
Cons ci ratio: 4.478335e-02	ci left: 4.968171e-03	ci right 5.196413e-03	k: 7622	n:1500000
KS ci ratio: 3.479185e-02	ci left: 8.245971e-03	ci right 8.538598e-03	k: 12587	n:1500000
ENKUR   1500000 perm   1155 sec   (1299 perm/sec)   p_kst 8.391333e-03   p_cons 5.081333e-03   p_joint 1.626667e-04

Joint ci ratio: 2.317724e-01	ci left: 1.674647e-04	ci right 2.119729e-04	k: 285	n:1510000
Cons ci ratio: 4.467234e-02	ci left: 4.960153e-03	ci right 5.187447e-03	k: 7660	n:1510000
KS ci ratio: 3.466394e-02	ci left: 8.252418e-03	ci right 8.544175e-03	k: 12680	n:1510000
ENKUR   1510000 perm   1169 sec   (1292 perm/sec)   p_kst 8.397351e-03   p_cons 5.072848e-03   p_joint 1.887417e-04

Joint ci ratio: 2.317726e-01	ci left: 1.663629e-04	ci right 2.105783e-04	k: 285	n:1520000
Cons ci ratio: 4.454470e-02	ci left: 4.956145e-03	ci right 5.182589e-03	k: 7704	n:1520000
KS ci ratio: 3.456608e-02	ci left: 8.245083e-03	ci right 8.535742e-03	k: 12752	n:1520000
ENKUR   1520000 perm   1182 sec   (1286 perm/sec)   p_kst 8.389474e-03   p_cons 5.068421e-03   p_joint 1.875000e-04

Joint ci ratio: 2.297725e-01	ci left: 1.683547e-04	ci right 2.126585e-04	k: 290	n:1530000
Cons ci ratio: 4.438938e-02	ci left: 4.958654e-03	ci right 5.184403e-03	k: 7758	n:1530000
KS ci ratio: 3.444198e-02	ci left: 8.250806e-03	ci right 8.540602e-03	k: 12844	n:1530000
ENKUR   1530000 perm   1196 sec   (1279 perm/sec)   p_kst 8.394771e-03   p_cons 5.070588e-03   p_joint 1.895425e-04

Joint ci ratio: 2.293788e-01	ci left: 1.678735e-04	ci right 2.119643e-04	k: 291	n:1540000
Cons ci ratio: 4.423282e-02	ci left: 4.961773e-03	ci right 5.186847e-03	k: 7813	n:1540000
KS ci ratio: 3.433527e-02	ci left: 8.248731e-03	ci right 8.537538e-03	k: 12924	n:1540000
ENKUR   1540000 perm   1210 sec   (1273 perm/sec)   p_kst 8.392208e-03   p_cons 5.073377e-03   p_joint 1.889610e-04

Joint ci ratio: 2.289871e-01	ci left: 1.673985e-04	ci right 2.112789e-04	k: 292	n:1550000
Cons ci ratio: 4.405259e-02	ci left: 4.970597e-03	ci right 5.195129e-03	k: 7877	n:1550000
KS ci ratio: 3.421363e-02	ci left: 8.254360e-03	ci right 8.542320e-03	k: 13016	n:1550000
ENKUR   1550000 perm   1224 sec   (1266 perm/sec)   p_kst 8.397419e-03   p_cons 5.081935e-03   p_joint 1.883871e-04

Joint ci ratio: 2.289873e-01	ci left: 1.663255e-04	ci right 2.099246e-04	k: 292	n:1560000
Cons ci ratio: 4.395249e-02	ci left: 4.961557e-03	ci right 5.185158e-03	k: 7913	n:1560000
KS ci ratio: 3.410902e-02	ci left: 8.252291e-03	ci right 8.539282e-03	k: 13096	n:1560000
ENKUR   1560000 perm   1238 sec   (1260 perm/sec)   p_kst 8.394872e-03   p_cons 5.072436e-03   p_joint 1.871795e-04

Joint ci ratio: 2.274399e-01	ci left: 1.676682e-04	ci right 2.112806e-04	k: 296	n:1570000
Cons ci ratio: 4.380326e-02	ci left: 4.963972e-03	ci right 5.186904e-03	k: 7967	n:1570000
KS ci ratio: 3.398976e-02	ci left: 8.257829e-03	ci right 8.543989e-03	k: 13188	n:1570000
ENKUR   1570000 perm   1253 sec   (1253 perm/sec)   p_kst 8.400000e-03   p_cons 5.074522e-03   p_joint 1.885350e-04

Joint ci ratio: 2.262997e-01	ci left: 1.683979e-04	ci right 2.119499e-04	k: 299	n:1580000
Cons ci ratio: 4.366921e-02	ci left: 4.963228e-03	ci right 5.185427e-03	k: 8016	n:1580000
KS ci ratio: 3.387303e-02	ci left: 8.262671e-03	ci right 8.547996e-03	k: 13279	n:1580000
ENKUR   1580000 perm   1267 sec   (1247 perm/sec)   p_kst 8.404430e-03   p_cons 5.073418e-03   p_joint 1.892405e-04

Joint ci ratio: 2.255492e-01	ci left: 1.685254e-04	ci right 2.119458e-04	k: 301	n:1590000
Cons ci ratio: 4.353097e-02	ci left: 4.963739e-03	ci right 5.185240e-03	k: 8067	n:1590000
KS ci ratio: 3.377278e-02	ci left: 8.259970e-03	ci right 8.544341e-03	k: 13358	n:1590000
ENKUR   1590000 perm   1281 sec   (1241 perm/sec)   p_kst 8.401258e-03   p_cons 5.073585e-03   p_joint 1.893082e-04

Joint ci ratio: 2.248060e-01	ci left: 1.686516e-04	ci right 2.119415e-04	k: 303	n:1600000
Cons ci ratio: 4.335915e-02	ci left: 4.972281e-03	ci right 5.193266e-03	k: 8131	n:1600000
KS ci ratio: 3.365700e-02	ci left: 8.265360e-03	ci right 8.548923e-03	k: 13450	n:1600000
ENKUR   1600000 perm   1296 sec   (1234 perm/sec)   p_kst 8.406250e-03   p_cons 5.081875e-03   p_joint 1.893750e-04

Joint ci ratio: 2.244372e-01	ci left: 1.681903e-04	ci right 2.112811e-04	k: 304	n:1610000
Cons ci ratio: 4.319730e-02	ci left: 4.978876e-03	ci right 5.199307e-03	k: 8192	n:1610000
KS ci ratio: 3.356365e-02	ci left: 8.260215e-03	ci right 8.542800e-03	k: 13525	n:1610000
ENKUR   1610000 perm   1310 sec   (1229 perm/sec)   p_kst 8.400621e-03   p_cons 5.088199e-03   p_joint 1.888199e-04

Joint ci ratio: 2.226197e-01	ci left: 1.700657e-04	ci right 2.132358e-04	k: 309	n:1620000
Cons ci ratio: 4.303725e-02	ci left: 4.985391e-03	ci right 5.205273e-03	k: 8253	n:1620000
KS ci ratio: 3.344629e-02	ci left: 8.267377e-03	ci right 8.549199e-03	k: 13620	n:1620000
ENKUR   1620000 perm   1325 sec   (1223 perm/sec)   p_kst 8.407407e-03   p_cons 5.094444e-03   p_joint 1.907407e-04

Joint ci ratio: 2.219050e-01	ci left: 1.701811e-04	ci right 2.132228e-04	k: 311	n:1630000
Cons ci ratio: 4.289193e-02	ci left: 4.988793e-03	ci right 5.208063e-03	k: 8309	n:1630000
KS ci ratio: 3.334854e-02	ci left: 8.265327e-03	ci right 8.546240e-03	k: 13700	n:1630000
ENKUR   1630000 perm   1339 sec   (1217 perm/sec)   p_kst 8.404908e-03   p_cons 5.097546e-03   p_joint 1.907975e-04

Joint ci ratio: 2.219051e-01	ci left: 1.691434e-04	ci right 2.119227e-04	k: 311	n:1640000
Cons ci ratio: 4.275320e-02	ci left: 4.990948e-03	ci right 5.209586e-03	k: 8363	n:1640000
KS ci ratio: 3.324678e-02	ci left: 8.265722e-03	ci right 8.545775e-03	k: 13784	n:1640000
ENKUR   1640000 perm   1353 sec   (1212 perm/sec)   p_kst 8.404878e-03   p_cons 5.099390e-03   p_joint 1.896341e-04

Joint ci ratio: 2.215504e-01	ci left: 1.686906e-04	ci right 2.112780e-04	k: 312	n:1650000
Cons ci ratio: 4.261581e-02	ci left: 4.993078e-03	ci right 5.211089e-03	k: 8417	n:1650000
KS ci ratio: 3.314836e-02	ci left: 8.264911e-03	ci right 8.544092e-03	k: 13866	n:1650000
ENKUR   1650000 perm   1368 sec   (1206 perm/sec)   p_kst 8.403636e-03   p_cons 5.101212e-03   p_joint 1.890909e-04

Joint ci ratio: 2.215505e-01	ci left: 1.676744e-04	ci right 2.100052e-04	k: 312	n:1660000
Cons ci ratio: 4.250497e-02	ci left: 4.989223e-03	ci right 5.206485e-03	k: 8461	n:1660000
KS ci ratio: 3.304841e-02	ci left: 8.265306e-03	ci right 8.543642e-03	k: 13950	n:1660000
ENKUR   1660000 perm   1383 sec   (1201 perm/sec)   p_kst 8.403614e-03   p_cons 5.096988e-03   p_joint 1.879518e-04

Joint ci ratio: 2.211975e-01	ci left: 1.672360e-04	ci right 2.093797e-04	k: 313	n:1670000
Cons ci ratio: 4.238997e-02	ci left: 4.986600e-03	ci right 5.203146e-03	k: 8507	n:1670000
KS ci ratio: 3.294700e-02	ci left: 8.266885e-03	ci right 8.544404e-03	k: 14036	n:1670000
ENKUR   1670000 perm   1397 sec   (1195 perm/sec)   p_kst 8.404790e-03   p_cons 5.094012e-03   p_joint 1.874251e-04

Joint ci ratio: 2.201483e-01	ci left: 1.679276e-04	ci right 2.100176e-04	k: 316	n:1680000
Cons ci ratio: 4.226100e-02	ci left: 4.987542e-03	ci right 5.203455e-03	k: 8559	n:1680000
KS ci ratio: 3.283948e-02	ci left: 8.271989e-03	ci right 8.548757e-03	k: 14128	n:1680000
ENKUR   1680000 perm   1412 sec   (1190 perm/sec)   p_kst 8.409524e-03   p_cons 5.094643e-03   p_joint 1.880952e-04

Joint ci ratio: 2.194571e-01	ci left: 1.680522e-04	ci right 2.100234e-04	k: 318	n:1690000
Cons ci ratio: 4.214059e-02	ci left: 4.986718e-03	ci right 5.201965e-03	k: 8608	n:1690000
KS ci ratio: 3.275043e-02	ci left: 8.268231e-03	ci right 8.544108e-03	k: 14205	n:1690000
ENKUR   1690000 perm   1427 sec   (1184 perm/sec)   p_kst 8.405325e-03   p_cons 5.093491e-03   p_joint 1.881657e-04

Joint ci ratio: 2.184323e-01	ci left: 1.687316e-04	ci right 2.106493e-04	k: 321	n:1700000
Cons ci ratio: 4.203096e-02	ci left: 4.983577e-03	ci right 5.198115e-03	k: 8653	n:1700000
KS ci ratio: 3.265979e-02	ci left: 8.265685e-03	ci right 8.540700e-03	k: 14284	n:1700000
ENKUR   1700000 perm   1442 sec   (1179 perm/sec)   p_kst 8.402353e-03   p_cons 5.090000e-03   p_joint 1.888235e-04

Joint ci ratio: 2.170880e-01	ci left: 1.699565e-04	ci right 2.118839e-04	k: 325	n:1710000
Cons ci ratio: 4.191491e-02	ci left: 4.982208e-03	ci right 5.196081e-03	k: 8701	n:1710000
KS ci ratio: 3.254022e-02	ci left: 8.278251e-03	ci right 8.552657e-03	k: 14389	n:1710000
ENKUR   1710000 perm   1458 sec   (1173 perm/sec)   p_kst 8.414620e-03   p_cons 5.088304e-03   p_joint 1.900585e-04

Joint ci ratio: 2.160959e-01	ci left: 1.706179e-04	ci right 2.124907e-04	k: 328	n:1720000
Cons ci ratio: 4.177583e-02	ci left: 4.986610e-03	ci right 5.199945e-03	k: 8759	n:1720000
KS ci ratio: 3.245357e-02	ci left: 8.274525e-03	ci right 8.548064e-03	k: 14466	n:1720000
ENKUR   1720000 perm   1473 sec   (1167 perm/sec)   p_kst 8.410465e-03   p_cons 5.092442e-03   p_joint 1.906977e-04

Joint ci ratio: 2.160960e-01	ci left: 1.696317e-04	ci right 2.112624e-04	k: 328	n:1730000
Cons ci ratio: 4.165238e-02	ci left: 4.987530e-03	ci right 5.200259e-03	k: 8811	n:1730000
KS ci ratio: 3.234744e-02	ci left: 8.281165e-03	ci right 8.554011e-03	k: 14561	n:1730000
ENKUR   1730000 perm   1489 sec   (1162 perm/sec)   p_kst 8.416763e-03   p_cons 5.093064e-03   p_joint 1.895954e-04

Joint ci ratio: 2.154421e-01	ci left: 1.697441e-04	ci right 2.112597e-04	k: 330	n:1740000
Cons ci ratio: 4.152530e-02	ci left: 4.989578e-03	ci right 5.201729e-03	k: 8865	n:1740000
KS ci ratio: 3.225788e-02	ci left: 8.279747e-03	ci right 8.551778e-03	k: 14642	n:1740000
ENKUR   1740000 perm   1505 sec   (1156 perm/sec)   p_kst 8.414943e-03   p_cons 5.094828e-03   p_joint 1.896552e-04

Joint ci ratio: 2.147942e-01	ci left: 1.698554e-04	ci right 2.112569e-04	k: 332	n:1750000
Cons ci ratio: 4.138306e-02	ci left: 4.995563e-03	ci right 5.207223e-03	k: 8926	n:1750000
KS ci ratio: 3.216024e-02	ci left: 8.282882e-03	ci right 8.554177e-03	k: 14731	n:1750000
ENKUR   1750000 perm   1520 sec   (1151 perm/sec)   p_kst 8.417714e-03   p_cons 5.100571e-03   p_joint 1.897143e-04

Joint ci ratio: 2.135155e-01	ci left: 1.710412e-04	ci right 2.124510e-04	k: 336	n:1760000
Cons ci ratio: 4.125381e-02	ci left: 4.998668e-03	ci right 5.209783e-03	k: 8982	n:1760000
KS ci ratio: 3.206240e-02	ci left: 8.286547e-03	ci right 8.557120e-03	k: 14821	n:1760000
ENKUR   1760000 perm   1535 sec   (1147 perm/sec)   p_kst 8.421023e-03   p_cons 5.103409e-03   p_joint 1.909091e-04

Joint ci ratio: 2.131995e-01	ci left: 1.706096e-04	ci right 2.118458e-04	k: 337	n:1770000
Cons ci ratio: 4.111891e-02	ci left: 5.003418e-03	ci right 5.214026e-03	k: 9041	n:1770000
KS ci ratio: 3.195681e-02	ci left: 8.294655e-03	ci right 8.564585e-03	k: 14919	n:1770000
ENKUR   1770000 perm   1550 sec   (1142 perm/sec)   p_kst 8.428814e-03   p_cons 5.107910e-03   p_joint 1.903955e-04

Joint ci ratio: 2.125715e-01	ci left: 1.707149e-04	ci right 2.118391e-04	k: 339	n:1780000
Cons ci ratio: 4.101704e-02	ci left: 5.000330e-03	ci right 5.210274e-03	k: 9086	n:1780000
KS ci ratio: 3.187580e-02	ci left: 8.290411e-03	ci right 8.559507e-03	k: 14995	n:1780000
ENKUR   1780000 perm   1566 sec   (1137 perm/sec)   p_kst 8.424157e-03   p_cons 5.104494e-03   p_joint 1.904494e-04

Joint ci ratio: 2.119490e-01	ci left: 1.708191e-04	ci right 2.118322e-04	k: 341	n:1790000
Cons ci ratio: 4.090692e-02	ci left: 4.999489e-03	ci right 5.208821e-03	k: 9135	n:1790000
KS ci ratio: 3.178796e-02	ci left: 8.290096e-03	ci right 8.558426e-03	k: 15078	n:1790000
ENKUR   1790000 perm   1582 sec   (1132 perm/sec)   p_kst 8.423464e-03   p_cons 5.103352e-03   p_joint 1.905028e-04

Joint ci ratio: 2.119491e-01	ci left: 1.698701e-04	ci right 2.106554e-04	k: 341	n:1800000
Cons ci ratio: 4.081332e-02	ci left: 4.994809e-03	ci right 5.203455e-03	k: 9177	n:1800000
KS ci ratio: 3.169136e-02	ci left: 8.294745e-03	ci right 8.562395e-03	k: 15170	n:1800000
ENKUR   1800000 perm   1597 sec   (1127 perm/sec)   p_kst 8.427778e-03   p_cons 5.098333e-03   p_joint 1.894444e-04

Joint ci ratio: 2.104164e-01	ci left: 1.715479e-04	ci right 2.123999e-04	k: 346	n:1810000
Cons ci ratio: 4.069153e-02	ci left: 4.997290e-03	ci right 5.205403e-03	k: 9232	n:1810000
KS ci ratio: 3.160922e-02	ci left: 8.292219e-03	ci right 8.559081e-03	k: 15249	n:1810000
ENKUR   1810000 perm   1613 sec   (1122 perm/sec)   p_kst 8.424862e-03   p_cons 5.100552e-03   p_joint 1.911602e-04

Joint ci ratio: 2.098126e-01	ci left: 1.716464e-04	ci right 2.123895e-04	k: 348	n:1820000
Cons ci ratio: 4.055547e-02	ci left: 5.003553e-03	ci right 5.211213e-03	k: 9294	n:1820000
KS ci ratio: 3.151112e-02	ci left: 8.298444e-03	ci right 8.564663e-03	k: 15344	n:1820000
ENKUR   1820000 perm   1629 sec   (1117 perm/sec)   p_kst 8.430769e-03   p_cons 5.106593e-03   p_joint 1.912088e-04

Joint ci ratio: 2.098127e-01	ci left: 1.707085e-04	ci right 2.112289e-04	k: 348	n:1830000
Cons ci ratio: 4.044684e-02	ci left: 5.003257e-03	ci right 5.210336e-03	k: 9344	n:1830000
KS ci ratio: 3.142113e-02	ci left: 8.300806e-03	ci right 8.566327e-03	k: 15432	n:1830000
ENKUR   1830000 perm   1645 sec   (1113 perm/sec)   p_kst 8.432787e-03   p_cons 5.106011e-03   p_joint 1.901639e-04

Joint ci ratio: 2.089167e-01	ci left: 1.713257e-04	ci right 2.117967e-04	k: 351	n:1840000
Cons ci ratio: 4.035419e-02	ci left: 4.999198e-03	ci right 5.205625e-03	k: 9387	n:1840000
KS ci ratio: 3.133800e-02	ci left: 8.299909e-03	ci right 8.564686e-03	k: 15514	n:1840000
ENKUR   1840000 perm   1661 sec   (1108 perm/sec)   p_kst 8.431522e-03   p_cons 5.101630e-03   p_joint 1.907609e-04

Joint ci ratio: 2.080320e-01	ci left: 1.719365e-04	ci right 2.123580e-04	k: 354	n:1850000
Cons ci ratio: 4.025574e-02	ci left: 4.996790e-03	ci right 5.202602e-03	k: 9433	n:1850000
KS ci ratio: 3.124543e-02	ci left: 8.304385e-03	ci right 8.568508e-03	k: 15606	n:1850000
ENKUR   1850000 perm   1677 sec   (1103 perm/sec)   p_kst 8.435676e-03   p_cons 5.098919e-03   p_joint 1.913514e-04

Joint ci ratio: 2.074484e-01	ci left: 1.720315e-04	ci right 2.123474e-04	k: 356	n:1860000
Cons ci ratio: 4.016440e-02	ci left: 4.992811e-03	ci right 5.197982e-03	k: 9476	n:1860000
KS ci ratio: 3.114268e-02	ci left: 8.314683e-03	ci right 8.578249e-03	k: 15709	n:1860000
ENKUR   1860000 perm   1693 sec   (1099 perm/sec)   p_kst 8.445699e-03   p_cons 5.094624e-03   p_joint 1.913978e-04

Joint ci ratio: 2.068698e-01	ci left: 1.721256e-04	ci right 2.123368e-04	k: 358	n:1870000
Cons ci ratio: 4.007368e-02	ci left: 4.988875e-03	ci right 5.193411e-03	k: 9519	n:1870000
KS ci ratio: 3.106472e-02	ci left: 8.312137e-03	ci right 8.574950e-03	k: 15788	n:1870000
ENKUR   1870000 perm   1709 sec   (1094 perm/sec)   p_kst 8.442781e-03   p_cons 5.090374e-03   p_joint 1.914439e-04

Joint ci ratio: 2.062959e-01	ci left: 1.722188e-04	ci right 2.123261e-04	k: 360	n:1880000
Cons ci ratio: 3.995208e-02	ci left: 4.992881e-03	ci right 5.196946e-03	k: 9577	n:1880000
KS ci ratio: 3.096766e-02	ci left: 8.320175e-03	ci right 8.582406e-03	k: 15887	n:1880000
ENKUR   1880000 perm   1725 sec   (1090 perm/sec)   p_kst 8.450532e-03   p_cons 5.094149e-03   p_joint 1.914894e-04

Joint ci ratio: 1.926363e-01	ci left: 1.979513e-04	ci right 2.406417e-04	k: 413	n:1890000
Cons ci ratio: 3.984198e-02	ci left: 4.994227e-03	ci right 5.197770e-03	k: 9630	n:1890000
KS ci ratio: 3.088515e-02	ci left: 8.320779e-03	ci right 8.582318e-03	k: 15972	n:1890000
ENKUR   1890000 perm   1742 sec   (1085 perm/sec)   p_kst 8.450794e-03   p_cons 5.095238e-03   p_joint 2.185185e-04

Joint ci ratio: 1.926364e-01	ci left: 1.969095e-04	ci right 2.393752e-04	k: 413	n:1900000
Cons ci ratio: 3.975342e-02	ci left: 4.990348e-03	ci right 5.193271e-03	k: 9673	n:1900000
KS ci ratio: 3.079943e-02	ci left: 8.323466e-03	ci right 8.584351e-03	k: 16061	n:1900000
ENKUR   1900000 perm   1759 sec   (1080 perm/sec)   p_kst 8.453158e-03   p_cons 5.091053e-03   p_joint 2.173684e-04

Joint ci ratio: 1.924043e-01	ci left: 1.963769e-04	ci right 2.386707e-04	k: 414	n:1910000
Cons ci ratio: 3.965724e-02	ci left: 4.988583e-03	ci right 5.190932e-03	k: 9720	n:1910000
KS ci ratio: 3.072881e-02	ci left: 8.318333e-03	ci right 8.578449e-03	k: 16135	n:1910000
ENKUR   1910000 perm   1776 sec   (1075 perm/sec)   p_kst 8.447644e-03   p_cons 5.089005e-03   p_joint 2.167539e-04

Joint ci ratio: 1.919423e-01	ci left: 1.963456e-04	ci right 2.385194e-04	k: 416	n:1920000
Cons ci ratio: 3.955769e-02	ci left: 4.987869e-03	ci right 5.189670e-03	k: 9769	n:1920000
KS ci ratio: 3.064914e-02	ci left: 8.318423e-03	ci right 8.577855e-03	k: 16219	n:1920000
ENKUR   1920000 perm   1793 sec   (1071 perm/sec)   p_kst 8.447396e-03   p_cons 5.088021e-03   p_joint 2.166667e-04

Joint ci ratio: 1.912556e-01	ci left: 1.968081e-04	ci right 2.389124e-04	k: 419	n:1930000
Cons ci ratio: 3.944273e-02	ci left: 4.991267e-03	ci right 5.192606e-03	k: 9826	n:1930000
KS ci ratio: 3.057860e-02	ci left: 8.313885e-03	ci right 8.572568e-03	k: 16294	n:1930000
ENKUR   1930000 perm   1810 sec   (1066 perm/sec)   p_kst 8.442487e-03   p_cons 5.091192e-03   p_joint 2.170984e-04

Joint ci ratio: 1.910283e-01	ci left: 1.962844e-04	ci right 2.382210e-04	k: 420	n:1940000
Cons ci ratio: 3.934278e-02	ci left: 4.991058e-03	ci right 5.191867e-03	k: 9876	n:1940000
KS ci ratio: 3.050573e-02	ci left: 8.310928e-03	ci right 8.568893e-03	k: 16372	n:1940000
ENKUR   1940000 perm   1827 sec   (1062 perm/sec)   p_kst 8.439175e-03   p_cons 5.090722e-03   p_joint 2.164948e-04

Joint ci ratio: 1.908019e-01	ci left: 1.957662e-04	ci right 2.375366e-04	k: 421	n:1950000
Cons ci ratio: 3.925352e-02	ci left: 4.988313e-03	ci right 5.188546e-03	k: 9921	n:1950000
KS ci ratio: 3.043058e-02	ci left: 8.309530e-03	ci right 8.566805e-03	k: 16453	n:1950000
ENKUR   1950000 perm   1844 sec   (1058 perm/sec)   p_kst 8.437436e-03   p_cons 5.087692e-03   p_joint 2.158974e-04

Joint ci ratio: 1.905763e-01	ci left: 1.952532e-04	ci right 2.368593e-04	k: 422	n:1960000
Cons ci ratio: 3.912150e-02	ci left: 4.996712e-03	ci right 5.196591e-03	k: 9988	n:1960000
KS ci ratio: 3.036524e-02	ci left: 8.303083e-03	ci right 8.559597e-03	k: 16524	n:1960000
ENKUR   1960000 perm   1861 sec   (1053 perm/sec)   p_kst 8.430612e-03   p_cons 5.095918e-03   p_joint 2.153061e-04

Joint ci ratio: 1.899040e-01	ci left: 1.957124e-04	ci right 2.372522e-04	k: 425	n:1970000
Cons ci ratio: 3.903373e-02	ci left: 4.993967e-03	ci right 5.193279e-03	k: 10033	n:1970000
KS ci ratio: 3.027182e-02	ci left: 8.312321e-03	ci right 8.568315e-03	k: 16626	n:1970000
ENKUR   1970000 perm   1879 sec   (1049 perm/sec)   p_kst 8.439594e-03   p_cons 5.092893e-03   p_joint 2.157360e-04

Joint ci ratio: 1.892388e-01	ci left: 1.961672e-04	ci right 2.376409e-04	k: 428	n:1980000
Cons ci ratio: 3.891552e-02	ci left: 4.999253e-03	ci right 5.198158e-03	k: 10094	n:1980000
KS ci ratio: 3.019200e-02	ci left: 8.314448e-03	ci right 8.569821e-03	k: 16714	n:1980000
ENKUR   1980000 perm   1896 sec   (1044 perm/sec)   p_kst 8.441414e-03   p_cons 5.097980e-03   p_joint 2.161616e-04

Joint ci ratio: 1.887993e-01	ci left: 1.961389e-04	ci right 2.374993e-04	k: 430	n:1990000
Cons ci ratio: 3.883876e-02	ci left: 4.994036e-03	ci right 5.192333e-03	k: 10134	n:1990000
KS ci ratio: 3.011733e-02	ci left: 8.314061e-03	ci right 8.568780e-03	k: 16797	n:1990000
ENKUR   1990000 perm   1913 sec   (1040 perm/sec)   p_kst 8.440704e-03   p_cons 5.092462e-03   p_joint 2.160804e-04

Joint ci ratio: 1.881456e-01	ci left: 1.965874e-04	ci right 2.378825e-04	k: 433	n:2000000
Cons ci ratio: 3.873758e-02	ci left: 4.995309e-03	ci right 5.193128e-03	k: 10187	n:2000000
KS ci ratio: 3.004141e-02	ci left: 8.314671e-03	ci right 8.568756e-03	k: 16882	n:2000000
ENKUR   2000000 perm   1931 sec   (1036 perm/sec)   p_kst 8.441000e-03   p_cons 5.093500e-03   p_joint 2.165000e-04

Joint ci ratio: 1.872844e-01	ci left: 1.975059e-04	ci right 2.387824e-04	k: 437	n:2010000
Cons ci ratio: 3.862961e-02	ci left: 4.998541e-03	ci right 5.195924e-03	k: 10244	n:2010000
KS ci ratio: 2.996518e-02	ci left: 8.315770e-03	ci right 8.569232e-03	k: 16968	n:2010000
ENKUR   2010000 perm   1948 sec   (1032 perm/sec)   p_kst 8.441791e-03   p_cons 5.096517e-03   p_joint 2.174129e-04

Joint ci ratio: 1.864349e-01	ci left: 1.984158e-04	ci right 2.396730e-04	k: 441	n:2020000
Cons ci ratio: 3.855453e-02	ci left: 4.993406e-03	ci right 5.190195e-03	k: 10284	n:2020000
KS ci ratio: 2.989394e-02	ci left: 8.314401e-03	ci right 8.567209e-03	k: 17049	n:2020000
ENKUR   2020000 perm   1966 sec   (1027 perm/sec)   p_kst 8.440099e-03   p_cons 5.091089e-03   p_joint 2.183168e-04

Joint ci ratio: 1.862245e-01	ci left: 1.979080e-04	ci right 2.390080e-04	k: 442	n:2030000
Cons ci ratio: 3.846303e-02	ci left: 4.992714e-03	ci right 5.188998e-03	k: 10333	n:2030000
KS ci ratio: 2.982935e-02	ci left: 8.309624e-03	ci right 8.561732e-03	k: 17123	n:2030000
ENKUR   2030000 perm   1984 sec   (1023 perm/sec)   p_kst 8.434975e-03   p_cons 5.090148e-03   p_joint 2.177340e-04

Joint ci ratio: 1.860147e-01	ci left: 1.974052e-04	ci right 2.383494e-04	k: 443	n:2040000
Cons ci ratio: 3.838705e-02	ci left: 4.988144e-03	ci right 5.183853e-03	k: 10374	n:2040000
KS ci ratio: 2.974949e-02	ci left: 8.313653e-03	ci right 8.565196e-03	k: 17215	n:2040000
ENKUR   2040000 perm   2002 sec   (1019 perm/sec)   p_kst 8.438725e-03   p_cons 5.085294e-03   p_joint 2.171569e-04

Joint ci ratio: 1.858056e-01	ci left: 1.969073e-04	ci right 2.376972e-04	k: 444	n:2050000
Cons ci ratio: 3.830412e-02	ci left: 4.985553e-03	ci right 5.180728e-03	k: 10419	n:2050000
KS ci ratio: 2.968237e-02	ci left: 8.310865e-03	ci right 8.561746e-03	k: 17293	n:2050000
ENKUR   2050000 perm   2020 sec   (1015 perm/sec)   p_kst 8.435610e-03   p_cons 5.082439e-03   p_joint 2.165854e-04

Joint ci ratio: 1.853895e-01	ci left: 1.968772e-04	ci right 2.375592e-04	k: 446	n:2060000
Cons ci ratio: 3.821990e-02	ci left: 4.983467e-03	ci right 5.178122e-03	k: 10465	n:2060000
KS ci ratio: 2.962000e-02	ci left: 8.305695e-03	ci right 8.555884e-03	k: 17366	n:2060000
ENKUR   2060000 perm   2038 sec   (1011 perm/sec)   p_kst 8.430097e-03   p_cons 5.080097e-03   p_joint 2.165049e-04

Joint ci ratio: 1.851825e-01	ci left: 1.963868e-04	ci right 2.369171e-04	k: 447	n:2070000
Cons ci ratio: 3.813258e-02	ci left: 4.982360e-03	ci right 5.176517e-03	k: 10513	n:2070000
KS ci ratio: 2.955034e-02	ci left: 8.304891e-03	ci right 8.554458e-03	k: 17448	n:2070000
ENKUR   2070000 perm   2056 sec   (1007 perm/sec)   p_kst 8.428986e-03   p_cons 5.078744e-03   p_joint 2.159420e-04

Joint ci ratio: 1.845655e-01	ci left: 1.968182e-04	ci right 2.372870e-04	k: 450	n:2080000
Cons ci ratio: 3.805129e-02	ci left: 4.979834e-03	ci right 5.173471e-03	k: 10558	n:2080000
KS ci ratio: 2.948286e-02	ci left: 8.303141e-03	ci right 8.552077e-03	k: 17528	n:2080000
ENKUR   2080000 perm   2073 sec   (1003 perm/sec)   p_kst 8.426923e-03   p_cons 5.075962e-03   p_joint 2.163462e-04

Joint ci ratio: 1.841577e-01	ci left: 1.967893e-04	ci right 2.371527e-04	k: 452	n:2090000
Cons ci ratio: 3.795074e-02	ci left: 4.982547e-03	ci right 5.175766e-03	k: 10614	n:2090000
KS ci ratio: 2.939397e-02	ci left: 8.313758e-03	ci right 8.562248e-03	k: 17634	n:2090000
ENKUR   2090000 perm   2091 sec   (999 perm/sec)   p_kst 8.437321e-03   p_cons 5.078469e-03   p_joint 2.162679e-04

Joint ci ratio: 1.833499e-01	ci left: 1.976693e-04	ci right 2.380157e-04	k: 456	n:2100000
Cons ci ratio: 3.785812e-02	ci left: 4.983348e-03	ci right 5.176116e-03	k: 10666	n:2100000
KS ci ratio: 2.932839e-02	ci left: 8.311512e-03	ci right 8.559371e-03	k: 17713	n:2100000
ENKUR   2100000 perm   2110 sec   (995 perm/sec)   p_kst 8.434762e-03   p_cons 5.079048e-03   p_joint 2.171429e-04

Joint ci ratio: 1.827510e-01	ci left: 1.980892e-04	ci right 2.383745e-04	k: 459	n:2110000
Cons ci ratio: 3.775024e-02	ci left: 4.988367e-03	ci right 5.180767e-03	k: 10727	n:2110000
KS ci ratio: 2.925247e-02	ci left: 8.315404e-03	ci right 8.562726e-03	k: 17805	n:2110000
ENKUR   2110000 perm   2127 sec   (992 perm/sec)   p_kst 8.438389e-03   p_cons 5.083886e-03   p_joint 2.175355e-04

Joint ci ratio: 1.823550e-01	ci left: 1.980551e-04	ci right 2.382366e-04	k: 461	n:2120000
Cons ci ratio: 3.766083e-02	ci left: 4.988667e-03	ci right 5.180613e-03	k: 10778	n:2120000
KS ci ratio: 2.918618e-02	ci left: 8.314108e-03	ci right 8.560822e-03	k: 17886	n:2120000
ENKUR   2120000 perm   2146 sec   (988 perm/sec)   p_kst 8.436792e-03   p_cons 5.083962e-03   p_joint 2.174528e-04

Joint ci ratio: 1.821580e-01	ci left: 1.975733e-04	ci right 2.376090e-04	k: 462	n:2130000
Cons ci ratio: 3.756333e-02	ci left: 4.991290e-03	ci right 5.182829e-03	k: 10834	n:2130000
KS ci ratio: 2.911953e-02	ci left: 8.313292e-03	ci right 8.559409e-03	k: 17968	n:2130000
ENKUR   2130000 perm   2164 sec   (984 perm/sec)   p_kst 8.435681e-03   p_cons 5.086385e-03   p_joint 2.169014e-04

Joint ci ratio: 1.819617e-01	ci left: 1.970961e-04	ci right 2.369872e-04	k: 463	n:2140000
Cons ci ratio: 3.745967e-02	ci left: 4.995741e-03	ci right 5.186911e-03	k: 10894	n:2140000
KS ci ratio: 2.905495e-02	ci left: 8.311556e-03	ci right 8.557067e-03	k: 18048	n:2140000
ENKUR   2140000 perm   2183 sec   (980 perm/sec)   p_kst 8.433645e-03   p_cons 5.090654e-03   p_joint 2.163551e-04

Joint ci ratio: 1.817659e-01	ci left: 1.966233e-04	ci right 2.363713e-04	k: 464	n:2150000
Cons ci ratio: 3.738260e-02	ci left: 4.993239e-03	ci right 5.183912e-03	k: 10939	n:2150000
KS ci ratio: 2.898758e-02	ci left: 8.311684e-03	ci right 8.556620e-03	k: 18132	n:2150000
ENKUR   2150000 perm   2202 sec   (977 perm/sec)   p_kst 8.433488e-03   p_cons 5.087907e-03   p_joint 2.158140e-04

Joint ci ratio: 1.815709e-01	ci left: 1.961549e-04	ci right 2.357609e-04	k: 465	n:2160000
Cons ci ratio: 3.728895e-02	ci left: 4.995348e-03	ci right 5.185612e-03	k: 10994	n:2160000
KS ci ratio: 2.892147e-02	ci left: 8.311352e-03	ci right 8.555710e-03	k: 18215	n:2160000
ENKUR   2160000 perm   2221 sec   (973 perm/sec)   p_kst 8.432870e-03   p_cons 5.089815e-03   p_joint 2.152778e-04

Joint ci ratio: 1.809892e-01	ci left: 1.965707e-04	ci right 2.361196e-04	k: 468	n:2170000
Cons ci ratio: 3.717741e-02	ci left: 5.002460e-03	ci right 5.192413e-03	k: 11060	n:2170000
KS ci ratio: 2.884549e-02	ci left: 8.316971e-03	ci right 8.560841e-03	k: 18311	n:2170000
ENKUR   2170000 perm   2239 sec   (969 perm/sec)   p_kst 8.438249e-03   p_cons 5.096774e-03   p_joint 2.156682e-04

Joint ci ratio: 1.800319e-01	ci left: 1.978590e-04	ci right 2.374336e-04	k: 473	n:2180000
Cons ci ratio: 3.709032e-02	ci left: 5.003144e-03	ci right 5.192669e-03	k: 11112	n:2180000
KS ci ratio: 2.877798e-02	ci left: 8.317985e-03	ci right 8.561305e-03	k: 18397	n:2180000
ENKUR   2180000 perm   2258 sec   (965 perm/sec)   p_kst 8.438991e-03   p_cons 5.097248e-03   p_joint 2.169725e-04

Joint ci ratio: 1.800320e-01	ci left: 1.969555e-04	ci right 2.363494e-04	k: 473	n:2190000
Cons ci ratio: 3.701216e-02	ci left: 5.001561e-03	ci right 5.190619e-03	k: 11159	n:2190000
KS ci ratio: 2.870624e-02	ci left: 8.321711e-03	ci right 8.564523e-03	k: 18489	n:2190000
ENKUR   2190000 perm   2277 sec   (962 perm/sec)   p_kst 8.442466e-03   p_cons 5.095434e-03   p_joint 2.159817e-04

Joint ci ratio: 1.792771e-01	ci left: 1.977967e-04	ci right 2.371750e-04	k: 477	n:2200000
Cons ci ratio: 3.692457e-02	ci left: 5.002695e-03	ci right 5.191338e-03	k: 11212	n:2200000
KS ci ratio: 2.862572e-02	ci left: 8.330819e-03	ci right 8.573204e-03	k: 18593	n:2200000
ENKUR   2200000 perm   2296 sec   (958 perm/sec)   p_kst 8.451364e-03   p_cons 5.096364e-03   p_joint 2.168182e-04

Joint ci ratio: 1.790899e-01	ci left: 1.973338e-04	ci right 2.365746e-04	k: 478	n:2210000
Cons ci ratio: 3.682774e-02	ci left: 5.006509e-03	ci right 5.194791e-03	k: 11271	n:2210000
KS ci ratio: 2.855512e-02	ci left: 8.334455e-03	ci right 8.576338e-03	k: 18685	n:2210000
ENKUR   2210000 perm   2315 sec   (955 perm/sec)   p_kst 8.454751e-03   p_cons 5.100000e-03   p_joint 2.162896e-04

Joint ci ratio: 1.789033e-01	ci left: 1.968752e-04	ci right 2.359795e-04	k: 479	n:2220000
Cons ci ratio: 3.674634e-02	ci left: 5.006273e-03	ci right 5.194121e-03	k: 11321	n:2220000
KS ci ratio: 2.848580e-02	ci left: 8.337611e-03	ci right 8.578989e-03	k: 18776	n:2220000
ENKUR   2220000 perm   2334 sec   (951 perm/sec)   p_kst 8.457658e-03   p_cons 5.099550e-03   p_joint 2.157658e-04

Joint ci ratio: 1.785318e-01	ci left: 1.968491e-04	ci right 2.358583e-04	k: 481	n:2230000
Cons ci ratio: 3.665252e-02	ci left: 5.009594e-03	ci right 5.197076e-03	k: 11379	n:2230000
KS ci ratio: 2.840711e-02	ci left: 8.346529e-03	ci right 8.587486e-03	k: 18880	n:2230000
ENKUR   2230000 perm   2353 sec   (948 perm/sec)   p_kst 8.466368e-03   p_cons 5.102691e-03   p_joint 2.156951e-04

Joint ci ratio: 1.772491e-01	ci left: 1.989562e-04	ci right 2.380693e-04	k: 488	n:2240000
Cons ci ratio: 3.656424e-02	ci left: 5.011558e-03	ci right 5.198653e-03	k: 11434	n:2240000
KS ci ratio: 2.834263e-02	ci left: 8.347388e-03	ci right 8.587814e-03	k: 18966	n:2240000
ENKUR   2240000 perm   2371 sec   (945 perm/sec)   p_kst 8.466964e-03   p_cons 5.104464e-03   p_joint 2.178571e-04

Joint ci ratio: 1.765285e-01	ci left: 1.997710e-04	ci right 2.388676e-04	k: 492	n:2250000
Cons ci ratio: 3.649575e-02	ci left: 5.008221e-03	ci right 5.194834e-03	k: 11477	n:2250000
KS ci ratio: 2.827709e-02	ci left: 8.349123e-03	ci right 8.589034e-03	k: 19054	n:2250000
ENKUR   2250000 perm   2390 sec   (941 perm/sec)   p_kst 8.468444e-03   p_cons 5.100889e-03   p_joint 2.186667e-04

Joint ci ratio: 1.759938e-01	ci left: 2.001560e-04	ci right 2.391966e-04	k: 495	n:2260000
Cons ci ratio: 3.642129e-02	ci left: 5.006668e-03	ci right 5.192834e-03	k: 11524	n:2260000
KS ci ratio: 2.821794e-02	ci left: 8.347328e-03	ci right 8.586678e-03	k: 19134	n:2260000
ENKUR   2260000 perm   2409 sec   (938 perm/sec)   p_kst 8.466372e-03   p_cons 5.099115e-03   p_joint 2.190265e-04

Joint ci ratio: 1.758167e-01	ci left: 1.996953e-04	ci right 2.386028e-04	k: 496	n:2270000
Cons ci ratio: 3.634728e-02	ci left: 5.005128e-03	ci right 5.190851e-03	k: 11571	n:2270000
KS ci ratio: 2.815917e-02	ci left: 8.345549e-03	ci right 8.584342e-03	k: 19214	n:2270000
ENKUR   2270000 perm   2428 sec   (935 perm/sec)   p_kst 8.464317e-03   p_cons 5.097357e-03   p_joint 2.185022e-04

Joint ci ratio: 1.756402e-01	ci left: 1.992388e-04	ci right 2.380142e-04	k: 497	n:2280000
Cons ci ratio: 3.628314e-02	ci left: 5.000995e-03	ci right 5.186230e-03	k: 11612	n:2280000
KS ci ratio: 2.810003e-02	ci left: 8.344222e-03	ci right 8.582467e-03	k: 19295	n:2280000
ENKUR   2280000 perm   2447 sec   (932 perm/sec)   p_kst 8.462719e-03   p_cons 5.092982e-03   p_joint 2.179825e-04

Joint ci ratio: 1.754641e-01	ci left: 1.987862e-04	ci right 2.374306e-04	k: 498	n:2290000
Cons ci ratio: 3.621466e-02	ci left: 4.998196e-03	ci right 5.182971e-03	k: 11656	n:2290000
KS ci ratio: 2.804199e-02	ci left: 8.342474e-03	ci right 8.580169e-03	k: 19375	n:2290000
ENKUR   2290000 perm   2467 sec   (928 perm/sec)   p_kst 8.460699e-03   p_cons 5.089956e-03   p_joint 2.174672e-04

Joint ci ratio: 1.754642e-01	ci left: 1.979219e-04	ci right 2.363983e-04	k: 498	n:2300000
Cons ci ratio: 3.614656e-02	ci left: 4.995422e-03	ci right 5.179740e-03	k: 11700	n:2300000
KS ci ratio: 2.799374e-02	ci left: 8.335128e-03	ci right 8.572199e-03	k: 19442	n:2300000
ENKUR   2300000 perm   2487 sec   (925 perm/sec)   p_kst 8.453043e-03   p_cons 5.086957e-03   p_joint 2.165217e-04

Joint ci ratio: 1.749391e-01	ci left: 1.983069e-04	ci right 2.367306e-04	k: 501	n:2310000
Cons ci ratio: 3.605263e-02	ci left: 4.999966e-03	ci right 5.183962e-03	k: 11761	n:2310000
KS ci ratio: 2.792914e-02	ci left: 8.337734e-03	ci right 8.574323e-03	k: 19532	n:2310000
ENKUR   2310000 perm   2506 sec   (922 perm/sec)   p_kst 8.455411e-03   p_cons 5.091342e-03   p_joint 2.168831e-04

Joint ci ratio: 1.744187e-01	ci left: 1.986887e-04	ci right 2.370598e-04	k: 504	n:2320000
Cons ci ratio: 3.596707e-02	ci left: 5.002335e-03	ci right 5.185973e-03	k: 11817	n:2320000
KS ci ratio: 2.785854e-02	ci left: 8.344171e-03	ci right 8.580334e-03	k: 19631	n:2320000
ENKUR   2320000 perm   2526 sec   (919 perm/sec)   p_kst 8.461638e-03   p_cons 5.093534e-03   p_joint 2.172414e-04

Joint ci ratio: 1.740743e-01	ci left: 1.986569e-04	ci right 2.369381e-04	k: 506	n:2330000
Cons ci ratio: 3.587604e-02	ci left: 5.006386e-03	ci right 5.189697e-03	k: 11877	n:2330000
KS ci ratio: 2.780696e-02	ci left: 8.339471e-03	ci right 8.575058e-03	k: 19704	n:2330000
ENKUR   2330000 perm   2545 sec   (916 perm/sec)   p_kst 8.456652e-03   p_cons 5.097425e-03   p_joint 2.171674e-04

Joint ci ratio: 1.739030e-01	ci left: 1.982167e-04	ci right 2.363715e-04	k: 507	n:2340000
Cons ci ratio: 3.580832e-02	ci left: 5.004049e-03	ci right 5.186922e-03	k: 11922	n:2340000
KS ci ratio: 2.773375e-02	ci left: 8.347969e-03	ci right 8.583165e-03	k: 19808	n:2340000
ENKUR   2340000 perm   2564 sec   (913 perm/sec)   p_kst 8.464957e-03   p_cons 5.094872e-03   p_joint 2.166667e-04

Joint ci ratio: 1.732223e-01	ci left: 1.990014e-04	ci right 2.371416e-04	k: 511	n:2350000
Cons ci ratio: 3.571999e-02	ci left: 5.007638e-03	ci right 5.190181e-03	k: 11981	n:2350000
KS ci ratio: 2.767795e-02	ci left: 8.346252e-03	ci right 8.580919e-03	k: 19888	n:2350000
ENKUR   2350000 perm   2584 sec   (910 perm/sec)   p_kst 8.462979e-03   p_cons 5.098298e-03   p_joint 2.174468e-04

Joint ci ratio: 1.730534e-01	ci left: 1.985635e-04	ci right 2.365789e-04	k: 512	n:2360000
Cons ci ratio: 3.565464e-02	ci left: 5.004896e-03	ci right 5.186999e-03	k: 12025	n:2360000
KS ci ratio: 2.761550e-02	ci left: 8.348759e-03	ci right 8.582958e-03	k: 19978	n:2360000
ENKUR   2360000 perm   2604 sec   (906 perm/sec)   p_kst 8.465254e-03   p_cons 5.095339e-03   p_joint 2.169492e-04

Joint ci ratio: 1.723826e-01	ci left: 1.993405e-04	ci right 2.373413e-04	k: 516	n:2370000
Cons ci ratio: 3.556891e-02	ci left: 5.008034e-03	ci right 5.189803e-03	k: 12083	n:2370000
KS ci ratio: 2.755417e-02	ci left: 8.350826e-03	ci right 8.584555e-03	k: 20067	n:2370000
ENKUR   2370000 perm   2624 sec   (903 perm/sec)   p_kst 8.467089e-03   p_cons 5.098312e-03   p_joint 2.177215e-04

Joint ci ratio: 1.720501e-01	ci left: 1.993071e-04	ci right 2.372206e-04	k: 518	n:2380000
Cons ci ratio: 3.550880e-02	ci left: 5.004065e-03	ci right 5.185378e-03	k: 12124	n:2380000
KS ci ratio: 2.749463e-02	ci left: 8.352041e-03	ci right 8.585291e-03	k: 20154	n:2380000
ENKUR   2380000 perm   2644 sec   (900 perm/sec)   p_kst 8.468067e-03   p_cons 5.094118e-03   p_joint 2.176471e-04

Joint ci ratio: 1.720502e-01	ci left: 1.984731e-04	ci right 2.362280e-04	k: 518	n:2390000
Cons ci ratio: 3.542559e-02	ci left: 5.006766e-03	ci right 5.187742e-03	k: 12181	n:2390000
KS ci ratio: 2.745120e-02	ci left: 8.343690e-03	ci right 8.576332e-03	k: 20218	n:2390000
ENKUR   2390000 perm   2665 sec   (897 perm/sec)   p_kst 8.459414e-03   p_cons 5.096653e-03   p_joint 2.167364e-04

Joint ci ratio: 1.718847e-01	ci left: 1.980449e-04	ci right 2.356784e-04	k: 519	n:2400000
Cons ci ratio: 3.534295e-02	ci left: 5.009444e-03	ci right 5.190087e-03	k: 12238	n:2400000
KS ci ratio: 2.738144e-02	ci left: 8.351547e-03	ci right 8.583808e-03	k: 20321	n:2400000
ENKUR   2400000 perm   2685 sec   (894 perm/sec)   p_kst 8.467083e-03   p_cons 5.099167e-03   p_joint 2.162500e-04

Joint ci ratio: 1.712273e-01	ci left: 1.988116e-04	ci right 2.364314e-04	k: 523	n:2410000
Cons ci ratio: 3.525369e-02	ci left: 5.014157e-03	ci right 5.194504e-03	k: 12300	n:2410000
KS ci ratio: 2.731558e-02	ci left: 8.357280e-03	ci right 8.589132e-03	k: 20419	n:2410000
ENKUR   2410000 perm   2705 sec   (891 perm/sec)   p_kst 8.472614e-03   p_cons 5.103734e-03   p_joint 2.170124e-04

Joint ci ratio: 1.710642e-01	ci left: 1.983856e-04	ci right 2.358853e-04	k: 524	n:2420000
Cons ci ratio: 3.518370e-02	ci left: 5.013507e-03	ci right 5.193465e-03	k: 12349	n:2420000
KS ci ratio: 2.726829e-02	ci left: 8.351884e-03	ci right 8.583179e-03	k: 20490	n:2420000
ENKUR   2420000 perm   2725 sec   (888 perm/sec)   p_kst 8.466942e-03   p_cons 5.102893e-03   p_joint 2.165289e-04

Joint ci ratio: 1.705775e-01	ci left: 1.987510e-04	ci right 2.362019e-04	k: 527	n:2430000
Cons ci ratio: 3.511839e-02	ci left: 5.011639e-03	ci right 5.191190e-03	k: 12395	n:2430000
KS ci ratio: 2.721991e-02	ci left: 8.347350e-03	ci right 8.578103e-03	k: 20563	n:2430000
ENKUR   2430000 perm   2746 sec   (885 perm/sec)   p_kst 8.462140e-03   p_cons 5.100823e-03   p_joint 2.168724e-04

Joint ci ratio: 1.704163e-01	ci left: 1.983288e-04	ci right 2.356611e-04	k: 528	n:2440000
Cons ci ratio: 3.502940e-02	ci left: 5.016693e-03	ci right 5.195960e-03	k: 12458	n:2440000
KS ci ratio: 2.717246e-02	ci left: 8.342447e-03	ci right 8.572656e-03	k: 20635	n:2440000
ENKUR   2440000 perm   2766 sec   (882 perm/sec)   p_kst 8.456967e-03   p_cons 5.105738e-03   p_joint 2.163934e-04

Joint ci ratio: 1.702555e-01	ci left: 1.979100e-04	ci right 2.351248e-04	k: 529	n:2450000
Cons ci ratio: 3.494530e-02	ci left: 5.020492e-03	ci right 5.199456e-03	k: 12518	n:2450000
KS ci ratio: 2.710875e-02	ci left: 8.347720e-03	ci right 8.577526e-03	k: 20732	n:2450000
ENKUR   2450000 perm   2786 sec   (879 perm/sec)   p_kst 8.462041e-03   p_cons 5.109388e-03   p_joint 2.159184e-04

Joint ci ratio: 1.700951e-01	ci left: 1.974947e-04	ci right 2.345928e-04	k: 530	n:2460000
Cons ci ratio: 3.487573e-02	ci left: 5.020232e-03	ci right 5.198822e-03	k: 12568	n:2460000
KS ci ratio: 2.705138e-02	ci left: 8.349316e-03	ci right 8.578673e-03	k: 20820	n:2460000
ENKUR   2460000 perm   2807 sec   (876 perm/sec)   p_kst 8.463415e-03   p_cons 5.108943e-03   p_joint 2.154472e-04

Joint ci ratio: 1.694580e-01	ci left: 1.982458e-04	ci right 2.353312e-04	k: 534	n:2470000
Cons ci ratio: 3.480796e-02	ci left: 5.019572e-03	ci right 5.197785e-03	k: 12617	n:2470000
KS ci ratio: 2.699633e-02	ci left: 8.349694e-03	ci right 8.578587e-03	k: 20905	n:2470000
ENKUR   2470000 perm   2828 sec   (874 perm/sec)   p_kst 8.463563e-03   p_cons 5.108097e-03   p_joint 2.161943e-04

Joint ci ratio: 1.692999e-01	ci left: 1.978325e-04	ci right 2.348026e-04	k: 535	n:2480000
Cons ci ratio: 3.473232e-02	ci left: 5.021317e-03	ci right 5.199197e-03	k: 12672	n:2480000
KS ci ratio: 2.694097e-02	ci left: 8.350469e-03	ci right 8.578907e-03	k: 20991	n:2480000
ENKUR   2480000 perm   2848 sec   (871 perm/sec)   p_kst 8.464113e-03   p_cons 5.109677e-03   p_joint 2.157258e-04

Joint ci ratio: 1.688280e-01	ci left: 1.981919e-04	ci right 2.351154e-04	k: 538	n:2490000
Cons ci ratio: 3.464759e-02	ci left: 5.025835e-03	ci right 5.203432e-03	k: 12734	n:2490000
KS ci ratio: 2.688337e-02	ci left: 8.352835e-03	ci right 8.580841e-03	k: 21081	n:2490000
ENKUR   2490000 perm   2869 sec   (868 perm/sec)   p_kst 8.466265e-03   p_cons 5.114056e-03   p_joint 2.160643e-04

Joint ci ratio: 1.688281e-01	ci left: 1.973991e-04	ci right 2.341749e-04	k: 538	n:2500000
Cons ci ratio: 3.457978e-02	ci left: 5.025558e-03	ci right 5.202791e-03	k: 12784	n:2500000
KS ci ratio: 2.683445e-02	ci left: 8.350016e-03	ci right 8.577524e-03	k: 21158	n:2500000
ENKUR   2500000 perm   2890 sec   (865 perm/sec)   p_kst 8.463200e-03   p_cons 5.113600e-03   p_joint 2.152000e-04

Joint ci ratio: 1.685158e-01	ci left: 1.973758e-04	ci right 2.340724e-04	k: 540	n:2510000
Cons ci ratio: 3.450562e-02	ci left: 5.027259e-03	ci right 5.204164e-03	k: 12839	n:2510000
KS ci ratio: 2.678707e-02	ci left: 8.346429e-03	ci right 8.573432e-03	k: 21233	n:2510000
ENKUR   2510000 perm   2911 sec   (862 perm/sec)   p_kst 8.459363e-03   p_cons 5.115139e-03   p_joint 2.151394e-04

Joint ci ratio: 1.683603e-01	ci left: 1.969727e-04	ci right 2.335571e-04	k: 541	n:2520000
Cons ci ratio: 3.442388e-02	ci left: 5.031308e-03	ci right 5.207928e-03	k: 12900	n:2520000
KS ci ratio: 2.672729e-02	ci left: 8.350755e-03	ci right 8.577361e-03	k: 21328	n:2520000
ENKUR   2520000 perm   2933 sec   (859 perm/sec)   p_kst 8.463492e-03   p_cons 5.119048e-03   p_joint 2.146825e-04

Joint ci ratio: 1.678962e-01	ci left: 1.973300e-04	ci right 2.338695e-04	k: 544	n:2530000
Cons ci ratio: 3.435337e-02	ci left: 5.032190e-03	ci right 5.208472e-03	k: 12953	n:2530000
KS ci ratio: 2.667419e-02	ci left: 8.351121e-03	ci right 8.577279e-03	k: 21413	n:2530000
ENKUR   2530000 perm   2954 sec   (857 perm/sec)   p_kst 8.463636e-03   p_cons 5.119763e-03   p_joint 2.150198e-04

Joint ci ratio: 1.672834e-01	ci left: 1.980619e-04	ci right 2.345896e-04	k: 548	n:2540000
Cons ci ratio: 3.429788e-02	ci left: 5.028771e-03	ci right 5.204643e-03	k: 12995	n:2540000
KS ci ratio: 2.662641e-02	ci left: 8.348355e-03	ci right 8.574028e-03	k: 21490	n:2540000
ENKUR   2540000 perm   2975 sec   (854 perm/sec)   p_kst 8.460630e-03   p_cons 5.116142e-03   p_joint 2.157480e-04

Joint ci ratio: 2.334196e-01	ci left: 9.768772e-05	ci right 1.238619e-04	k: 281	n:2550000
Cons ci ratio: 3.424793e-02	ci left: 5.023825e-03	ci right 5.199263e-03	k: 13033	n:2550000
KS ci ratio: 2.657639e-02	ci left: 8.347170e-03	ci right 8.572380e-03	k: 21571	n:2550000
ENKUR   2550000 perm   2996 sec   (851 perm/sec)   p_kst 8.459216e-03   p_cons 5.110980e-03   p_joint 1.101961e-04

Joint ci ratio: 2.394395e-01	ci left: 9.216122e-05	ci right 1.175861e-04	k: 267	n:2560000
Cons ci ratio: 3.416801e-02	ci left: 5.027825e-03	ci right 5.202985e-03	k: 13094	n:2560000
KS ci ratio: 2.652789e-02	ci left: 8.345218e-03	ci right 8.569959e-03	k: 21650	n:2560000
ENKUR   2560000 perm   3019 sec   (848 perm/sec)   p_kst 8.457031e-03   p_cons 5.114844e-03   p_joint 1.042969e-04

Joint ci ratio: 1.662270e-01	ci left: 1.983599e-04	ci right 2.346885e-04	k: 555	n:2570000
Cons ci ratio: 3.412385e-02	ci left: 5.021378e-03	ci right 5.196083e-03	k: 13128	n:2570000
KS ci ratio: 2.647412e-02	ci left: 8.346761e-03	ci right 8.571080e-03	k: 21738	n:2570000
ENKUR   2570000 perm   3041 sec   (845 perm/sec)   p_kst 8.458366e-03   p_cons 5.108171e-03   p_joint 2.159533e-04

Joint ci ratio: 1.657803e-01	ci left: 1.987056e-04	ci right 2.349899e-04	k: 558	n:2580000
Cons ci ratio: 3.405517e-02	ci left: 5.022283e-03	ci right 5.196661e-03	k: 13181	n:2580000
KS ci ratio: 2.642129e-02	ci left: 8.347907e-03	ci right 8.571803e-03	k: 21825	n:2580000
ENKUR   2580000 perm   3062 sec   (842 perm/sec)   p_kst 8.459302e-03   p_cons 5.108915e-03   p_joint 2.162791e-04

Joint ci ratio: 1.650438e-01	ci left: 1.997890e-04	ci right 2.360929e-04	k: 563	n:2590000
Cons ci ratio: 3.397916e-02	ci left: 5.025478e-03	ci right 5.199570e-03	k: 13240	n:2590000
KS ci ratio: 2.636635e-02	ci left: 8.350579e-03	ci right 8.574074e-03	k: 21916	n:2590000
ENKUR   2590000 perm   3084 sec   (840 perm/sec)   p_kst 8.461776e-03   p_cons 5.111969e-03   p_joint 2.173745e-04

Joint ci ratio: 1.648977e-01	ci left: 1.993893e-04	ci right 2.355853e-04	k: 564	n:2600000
Cons ci ratio: 3.392161e-02	ci left: 5.023310e-03	ci right 5.197026e-03	k: 13285	n:2600000
KS ci ratio: 2.631779e-02	ci left: 8.349410e-03	ci right 8.572456e-03	k: 21997	n:2600000
ENKUR   2600000 perm   3105 sec   (837 perm/sec)   p_kst 8.460385e-03   p_cons 5.109615e-03   p_joint 2.169231e-04

Joint ci ratio: 1.646066e-01	ci left: 1.993600e-04	ci right 2.354806e-04	k: 566	n:2610000
Cons ci ratio: 3.386817e-02	ci left: 5.020019e-03	ci right 5.193343e-03	k: 13327	n:2610000
KS ci ratio: 2.626409e-02	ci left: 8.351676e-03	ci right 8.574321e-03	k: 22087	n:2610000
ENKUR   2610000 perm   3127 sec   (835 perm/sec)   p_kst 8.462452e-03   p_cons 5.106130e-03   p_joint 2.168582e-04

Joint ci ratio: 1.646067e-01	ci left: 1.985991e-04	ci right 2.345818e-04	k: 566	n:2620000
Cons ci ratio: 3.382390e-02	ci left: 5.014104e-03	ci right 5.186993e-03	k: 13362	n:2620000
KS ci ratio: 2.621548e-02	ci left: 8.350892e-03	ci right 8.573097e-03	k: 22169	n:2620000
ENKUR   2620000 perm   3148 sec   (832 perm/sec)   p_kst 8.461450e-03   p_cons 5.100000e-03   p_joint 2.160305e-04

Joint ci ratio: 1.644618e-01	ci left: 1.982086e-04	ci right 2.340857e-04	k: 567	n:2630000
Cons ci ratio: 3.376460e-02	ci left: 5.012759e-03	ci right 5.185292e-03	k: 13409	n:2630000
KS ci ratio: 2.616715e-02	ci left: 8.350114e-03	ci right 8.571883e-03	k: 22251	n:2630000
ENKUR   2630000 perm   3169 sec   (830 perm/sec)   p_kst 8.460456e-03   p_cons 5.098479e-03   p_joint 2.155894e-04

Joint ci ratio: 1.641730e-01	ci left: 1.981842e-04	ci right 2.339877e-04	k: 569	n:2640000
Cons ci ratio: 3.370561e-02	ci left: 5.011424e-03	ci right 5.183604e-03	k: 13456	n:2640000
KS ci ratio: 2.611731e-02	ci left: 8.350471e-03	ci right 8.571821e-03	k: 22336	n:2640000
ENKUR   2640000 perm   3191 sec   (827 perm/sec)   p_kst 8.460606e-03   p_cons 5.096970e-03   p_joint 2.155303e-04

Joint ci ratio: 1.637426e-01	ci left: 1.985219e-04	ci right 2.342832e-04	k: 572	n:2650000
Cons ci ratio: 3.364567e-02	ci left: 5.010473e-03	ci right 5.182309e-03	k: 13504	n:2650000
KS ci ratio: 2.607186e-02	ci left: 8.348202e-03	ci right 8.569101e-03	k: 22414	n:2650000
ENKUR   2650000 perm   3213 sec   (825 perm/sec)   p_kst 8.458113e-03   p_cons 5.095849e-03   p_joint 2.158491e-04

Joint ci ratio: 1.631740e-01	ci left: 1.992179e-04	ci right 2.349677e-04	k: 576	n:2660000
Cons ci ratio: 3.357486e-02	ci left: 5.012885e-03	ci right 5.184435e-03	k: 13561	n:2660000
KS ci ratio: 2.602490e-02	ci left: 8.347071e-03	ci right 8.567535e-03	k: 22495	n:2660000
ENKUR   2660000 perm   3236 sec   (822 perm/sec)   p_kst 8.456767e-03   p_cons 5.098120e-03   p_joint 2.165414e-04

Joint ci ratio: 1.630328e-01	ci left: 1.988310e-04	ci right 2.344775e-04	k: 577	n:2670000
Cons ci ratio: 3.350819e-02	ci left: 5.014166e-03	ci right 5.185412e-03	k: 13615	n:2670000
KS ci ratio: 2.597065e-02	ci left: 8.350785e-03	ci right 8.570882e-03	k: 22589	n:2670000
ENKUR   2670000 perm   3258 sec   (820 perm/sec)   p_kst 8.460300e-03   p_cons 5.099251e-03   p_joint 2.161049e-04

Joint ci ratio: 1.626113e-01	ci left: 1.991629e-04	ci right 2.347675e-04	k: 580	n:2680000
Cons ci ratio: 3.344808e-02	ci left: 5.013587e-03	ci right 5.184500e-03	k: 13664	n:2680000
KS ci ratio: 2.591444e-02	ci left: 8.355956e-03	ci right 8.575705e-03	k: 22687	n:2680000
ENKUR   2680000 perm   3280 sec   (817 perm/sec)   p_kst 8.465299e-03   p_cons 5.098507e-03   p_joint 2.164179e-04

Joint ci ratio: 1.620544e-01	ci left: 1.998491e-04	ci right 2.354421e-04	k: 584	n:2690000
Cons ci ratio: 3.338216e-02	ci left: 5.014856e-03	ci right 5.185469e-03	k: 13718	n:2690000
KS ci ratio: 2.586374e-02	ci left: 8.357765e-03	ci right 8.577125e-03	k: 22776	n:2690000
ENKUR   2690000 perm   3303 sec   (814 perm/sec)   p_kst 8.466914e-03   p_cons 5.099628e-03   p_joint 2.171004e-04

Joint ci ratio: 2.266869e-01	ci left: 9.819416e-05	ci right 1.236392e-04	k: 298	n:2700000
Cons ci ratio: 3.331664e-02	ci left: 5.016115e-03	ci right 5.186430e-03	k: 13772	n:2700000
KS ci ratio: 2.581162e-02	ci left: 8.360664e-03	ci right 8.579651e-03	k: 22868	n:2700000
ENKUR   2700000 perm   3325 sec   (812 perm/sec)   p_kst 8.469630e-03   p_cons 5.100741e-03   p_joint 1.103704e-04

Joint ci ratio: 2.259325e-01	ci left: 9.852799e-05	ci right 1.239627e-04	k: 300	n:2710000
Cons ci ratio: 3.327449e-02	ci left: 5.010413e-03	ci right 5.180315e-03	k: 13807	n:2710000
KS ci ratio: 2.576549e-02	ci left: 8.359876e-03	ci right 8.578446e-03	k: 22950	n:2710000
ENKUR   2710000 perm   3348 sec   (810 perm/sec)   p_kst 8.468635e-03   p_cons 5.094834e-03   p_joint 1.107011e-04

Joint ci ratio: 2.255581e-01	ci left: 9.851261e-05	ci right 1.238953e-04	k: 301	n:2720000
Cons ci ratio: 3.320719e-02	ci left: 5.012410e-03	ci right 5.182029e-03	k: 13863	n:2720000
KS ci ratio: 2.571115e-02	ci left: 8.364574e-03	ci right 8.582798e-03	k: 23047	n:2720000
ENKUR   2720000 perm   3371 sec   (807 perm/sec)   p_kst 8.473162e-03   p_cons 5.096691e-03   p_joint 1.106618e-04

Joint ci ratio: 2.251856e-01	ci left: 9.849738e-05	ci right 1.238285e-04	k: 302	n:2730000
Cons ci ratio: 3.313910e-02	ci left: 5.014755e-03	ci right 5.184099e-03	k: 13920	n:2730000
KS ci ratio: 2.566051e-02	ci left: 8.367054e-03	ci right 8.584907e-03	k: 23138	n:2730000
ENKUR   2730000 perm   3395 sec   (804 perm/sec)   p_kst 8.475458e-03   p_cons 5.098901e-03   p_joint 1.106227e-04

Joint ci ratio: 2.251856e-01	ci left: 9.813790e-05	ci right 1.233765e-04	k: 302	n:2740000
Cons ci ratio: 3.308213e-02	ci left: 5.013826e-03	ci right 5.182843e-03	k: 13968	n:2740000
KS ci ratio: 2.561073e-02	ci left: 8.369153e-03	ci right 8.586632e-03	k: 23228	n:2740000
ENKUR   2740000 perm   3419 sec   (802 perm/sec)   p_kst 8.477372e-03   p_cons 5.097810e-03   p_joint 1.102190e-04

Joint ci ratio: 2.237137e-01	ci left: 9.915381e-05	ci right 1.244641e-04	k: 306	n:2750000
Cons ci ratio: 3.301717e-02	ci left: 5.015429e-03	ci right 5.184161e-03	k: 14023	n:2750000
KS ci ratio: 2.556787e-02	ci left: 8.366902e-03	ci right 8.583953e-03	k: 23306	n:2750000
ENKUR   2750000 perm   3442 sec   (799 perm/sec)   p_kst 8.474909e-03   p_cons 5.099273e-03   p_joint 1.112727e-04

Joint ci ratio: 2.237137e-01	ci left: 9.879456e-05	ci right 1.240131e-04	k: 306	n:2760000
Cons ci ratio: 3.294671e-02	ci left: 5.018817e-03	ci right 5.187296e-03	k: 14083	n:2760000
KS ci ratio: 2.551587e-02	ci left: 8.370788e-03	ci right 8.587492e-03	k: 23401	n:2760000
ENKUR   2760000 perm   3465 sec   (796 perm/sec)   p_kst 8.478623e-03   p_cons 5.102536e-03   p_joint 1.108696e-04

Joint ci ratio: 2.237138e-01	ci left: 9.843790e-05	ci right 1.235654e-04	k: 306	n:2770000
Cons ci ratio: 3.288839e-02	ci left: 5.018601e-03	ci right 5.186769e-03	k: 14133	n:2770000
KS ci ratio: 2.547185e-02	ci left: 8.369624e-03	ci right 8.585918e-03	k: 23482	n:2770000
ENKUR   2770000 perm   3489 sec   (794 perm/sec)   p_kst 8.477256e-03   p_cons 5.102166e-03   p_joint 1.104693e-04

Joint ci ratio: 2.233503e-01	ci left: 9.842338e-05	ci right 1.235008e-04	k: 307	n:2780000
Cons ci ratio: 3.282224e-02	ci left: 5.020884e-03	ci right 5.188783e-03	k: 14190	n:2780000
KS ci ratio: 2.543295e-02	ci left: 8.365251e-03	ci right 8.581098e-03	k: 23554	n:2780000
ENKUR   2780000 perm   3513 sec   (791 perm/sec)   p_kst 8.472662e-03   p_cons 5.104317e-03   p_joint 1.104317e-04

Joint ci ratio: 2.233504e-01	ci left: 9.807060e-05	ci right 1.230581e-04	k: 307	n:2790000
Cons ci ratio: 3.276804e-02	ci left: 5.019595e-03	ci right 5.187169e-03	k: 14237	n:2790000
KS ci ratio: 2.537960e-02	ci left: 8.370527e-03	ci right 8.586050e-03	k: 23653	n:2790000
ENKUR   2790000 perm   3536 sec   (789 perm/sec)   p_kst 8.477778e-03   p_cons 5.102867e-03   p_joint 1.100358e-04

Joint ci ratio: 2.229887e-01	ci left: 9.805753e-05	ci right 1.229957e-04	k: 308	n:2800000
Cons ci ratio: 3.270146e-02	ci left: 5.022213e-03	ci right 5.189527e-03	k: 14295	n:2800000
KS ci ratio: 2.533143e-02	ci left: 8.372572e-03	ci right 8.587732e-03	k: 23743	n:2800000
ENKUR   2800000 perm   3561 sec   (786 perm/sec)   p_kst 8.479643e-03   p_cons 5.105357e-03   p_joint 1.100000e-04

Joint ci ratio: 2.226287e-01	ci left: 9.804458e-05	ci right 1.229337e-04	k: 309	n:2810000
Cons ci ratio: 3.263986e-02	ci left: 5.023400e-03	ci right 5.190433e-03	k: 14349	n:2810000
KS ci ratio: 2.528782e-02	ci left: 8.371773e-03	ci right 8.586537e-03	k: 23825	n:2810000
ENKUR   2810000 perm   3585 sec   (784 perm/sec)   p_kst 8.478648e-03   p_cons 5.106406e-03   p_joint 1.099644e-04

Joint ci ratio: 2.222705e-01	ci left: 9.803176e-05	ci right 1.228721e-04	k: 310	n:2820000
Cons ci ratio: 3.259680e-02	ci left: 5.018952e-03	ci right 5.185613e-03	k: 14387	n:2820000
KS ci ratio: 2.523911e-02	ci left: 8.374504e-03	ci right 8.588919e-03	k: 23917	n:2820000
ENKUR   2820000 perm   3608 sec   (782 perm/sec)   p_kst 8.481206e-03   p_cons 5.101773e-03   p_joint 1.099291e-04

Joint ci ratio: 2.219140e-01	ci left: 9.801906e-05	ci right 1.228109e-04	k: 311	n:2830000
Cons ci ratio: 3.253352e-02	ci left: 5.020844e-03	ci right 5.187238e-03	k: 14443	n:2830000
KS ci ratio: 2.520444e-02	ci left: 8.368086e-03	ci right 8.582038e-03	k: 23983	n:2830000
ENKUR   2830000 perm   3632 sec   (779 perm/sec)   p_kst 8.474558e-03   p_cons 5.103534e-03   p_joint 1.098940e-04

Joint ci ratio: 2.219141e-01	ci left: 9.767392e-05	ci right 1.223785e-04	k: 311	n:2840000
Cons ci ratio: 3.248300e-02	ci left: 5.018881e-03	ci right 5.184947e-03	k: 14488	n:2840000
KS ci ratio: 2.516675e-02	ci left: 8.363813e-03	ci right 8.577332e-03	k: 24055	n:2840000
ENKUR   2840000 perm   3656 sec   (777 perm/sec)   p_kst 8.470070e-03   p_cons 5.101408e-03   p_joint 1.095070e-04

Joint ci ratio: 2.215593e-01	ci left: 9.766259e-05	ci right 1.223194e-04	k: 312	n:2850000
Cons ci ratio: 3.241702e-02	ci left: 5.021805e-03	ci right 5.187624e-03	k: 14547	n:2850000
KS ci ratio: 2.513080e-02	ci left: 8.358525e-03	ci right 8.571599e-03	k: 24124	n:2850000
ENKUR   2850000 perm   3680 sec   (775 perm/sec)   p_kst 8.464561e-03   p_cons 5.104211e-03   p_joint 1.094737e-04

Joint ci ratio: 2.208548e-01	ci left: 9.798167e-05	ci right 1.226297e-04	k: 314	n:2860000
Cons ci ratio: 3.236480e-02	ci left: 5.020547e-03	ci right 5.186052e-03	k: 14594	n:2860000
KS ci ratio: 2.508351e-02	ci left: 8.360918e-03	ci right 8.573646e-03	k: 24215	n:2860000
ENKUR   2860000 perm   3704 sec   (772 perm/sec)   p_kst 8.466783e-03   p_cons 5.102797e-03   p_joint 1.097902e-04

Joint ci ratio: 2.205050e-01	ci left: 9.796945e-05	ci right 1.225701e-04	k: 315	n:2870000
Cons ci ratio: 3.230619e-02	ci left: 5.021371e-03	ci right 5.186598e-03	k: 14647	n:2870000
KS ci ratio: 2.503960e-02	ci left: 8.361217e-03	ci right 8.573575e-03	k: 24300	n:2870000
ENKUR   2870000 perm   3727 sec   (770 perm/sec)   p_kst 8.466899e-03   p_cons 5.103484e-03   p_joint 1.097561e-04

Joint ci ratio: 2.198105e-01	ci left: 9.828543e-05	ci right 1.228772e-04	k: 317	n:2880000
Cons ci ratio: 3.225451e-02	ci left: 5.020124e-03	ci right 5.185040e-03	k: 14694	n:2880000
KS ci ratio: 2.499231e-02	ci left: 8.363929e-03	ci right 8.575949e-03	k: 24392	n:2880000
ENKUR   2880000 perm   3750 sec   (768 perm/sec)   p_kst 8.469444e-03   p_cons 5.102083e-03   p_joint 1.100694e-04

Joint ci ratio: 2.198106e-01	ci left: 9.794534e-05	ci right 1.224520e-04	k: 317	n:2890000
Cons ci ratio: 3.220966e-02	ci left: 5.016825e-03	ci right 5.181400e-03	k: 14735	n:2890000
KS ci ratio: 2.495402e-02	ci left: 8.360778e-03	ci right 8.572389e-03	k: 24467	n:2890000
ENKUR   2890000 perm   3775 sec   (766 perm/sec)   p_kst 8.466090e-03   p_cons 5.098616e-03   p_joint 1.096886e-04

Joint ci ratio: 2.194658e-01	ci left: 9.793346e-05	ci right 1.223935e-04	k: 318	n:2900000
Cons ci ratio: 3.215625e-02	ci left: 5.016287e-03	ci right 5.180566e-03	k: 14784	n:2900000
KS ci ratio: 2.491897e-02	ci left: 8.355592e-03	ci right 8.566770e-03	k: 24536	n:2900000
ENKUR   2900000 perm   3800 sec   (763 perm/sec)   p_kst 8.460690e-03   p_cons 5.097931e-03   p_joint 1.096552e-04

Joint ci ratio: 2.187810e-01	ci left: 9.824649e-05	ci right 1.226978e-04	k: 320	n:2910000
Cons ci ratio: 3.210637e-02	ci left: 5.014729e-03	ci right 5.178698e-03	k: 14830	n:2910000
KS ci ratio: 2.486828e-02	ci left: 8.361029e-03	ci right 8.571909e-03	k: 24636	n:2910000
ENKUR   2910000 perm   3824 sec   (761 perm/sec)   p_kst 8.465979e-03   p_cons 5.096220e-03   p_joint 1.099656e-04

Joint ci ratio: 2.187810e-01	ci left: 9.791002e-05	ci right 1.222776e-04	k: 320	n:2920000
Cons ci ratio: 3.205672e-02	ci left: 5.013182e-03	ci right 5.176843e-03	k: 14876	n:2920000
KS ci ratio: 2.482752e-02	ci left: 8.359963e-03	ci right 8.570465e-03	k: 24717	n:2920000
ENKUR   2920000 perm   3849 sec   (759 perm/sec)   p_kst 8.464726e-03   p_cons 5.094521e-03   p_joint 1.095890e-04

Joint ci ratio: 2.184410e-01	ci left: 9.789847e-05	ci right 1.222203e-04	k: 321	n:2930000
Cons ci ratio: 3.200623e-02	ci left: 5.011985e-03	ci right 5.175344e-03	k: 14923	n:2930000
KS ci ratio: 2.478998e-02	ci left: 8.356869e-03	ci right 8.566971e-03	k: 24792	n:2930000
ENKUR   2930000 perm   3874 sec   (756 perm/sec)   p_kst 8.461433e-03   p_cons 5.093174e-03   p_joint 1.095563e-04

Joint ci ratio: 2.177657e-01	ci left: 9.820860e-05	ci right 1.225219e-04	k: 323	n:2940000
Cons ci ratio: 3.195275e-02	ci left: 5.011808e-03	ci right 5.174883e-03	k: 14973	n:2940000
KS ci ratio: 2.475010e-02	ci left: 8.355487e-03	ci right 8.565211e-03	k: 24872	n:2940000
ENKUR   2940000 perm   3899 sec   (754 perm/sec)   p_kst 8.459864e-03   p_cons 5.092857e-03   p_joint 1.098639e-04

Joint ci ratio: 2.177658e-01	ci left: 9.787568e-05	ci right 1.221066e-04	k: 323	n:2950000
Cons ci ratio: 3.189634e-02	ci left: 5.012642e-03	ci right 5.175451e-03	k: 15026	n:2950000
KS ci ratio: 2.470542e-02	ci left: 8.357483e-03	ci right 8.566873e-03	k: 24962	n:2950000
ENKUR   2950000 perm   3923 sec   (752 perm/sec)   p_kst 8.461695e-03   p_cons 5.093559e-03   p_joint 1.094915e-04

Joint ci ratio: 2.170967e-01	ci left: 9.818391e-05	ci right 1.224065e-04	k: 325	n:2960000
Cons ci ratio: 3.183493e-02	ci left: 5.015146e-03	ci right 5.177717e-03	k: 15084	n:2960000
KS ci ratio: 2.466198e-02	ci left: 8.358795e-03	ci right 8.567844e-03	k: 25050	n:2960000
ENKUR   2960000 perm   3948 sec   (750 perm/sec)   p_kst 8.462838e-03   p_cons 5.095946e-03   p_joint 1.097973e-04

Joint ci ratio: 2.170968e-01	ci left: 9.785332e-05	ci right 1.219944e-04	k: 325	n:2970000
Cons ci ratio: 3.178230e-02	ci left: 5.014961e-03	ci right 5.177252e-03	k: 15134	n:2970000
KS ci ratio: 2.462222e-02	ci left: 8.357755e-03	ci right 8.566437e-03	k: 25131	n:2970000
ENKUR   2970000 perm   3973 sec   (748 perm/sec)   p_kst 8.461616e-03   p_cons 5.095623e-03   p_joint 1.094276e-04

Joint ci ratio: 2.167646e-01	ci left: 9.784229e-05	ci right 1.219387e-04	k: 326	n:2980000
Cons ci ratio: 3.174465e-02	ci left: 5.010116e-03	ci right 5.172056e-03	k: 15170	n:2980000
KS ci ratio: 2.457626e-02	ci left: 8.361059e-03	ci right 8.569428e-03	k: 25225	n:2980000
ENKUR   2980000 perm   3998 sec   (745 perm/sec)   p_kst 8.464765e-03   p_cons 5.090604e-03   p_joint 1.093960e-04

Joint ci ratio: 2.164339e-01	ci left: 9.783136e-05	ci right 1.218835e-04	k: 327	n:2990000
Cons ci ratio: 3.169143e-02	ci left: 5.010282e-03	ci right 5.171950e-03	k: 15221	n:2990000
KS ci ratio: 2.453496e-02	ci left: 8.361349e-03	ci right 8.569371e-03	k: 25310	n:2990000
ENKUR   2990000 perm   4023 sec   (743 perm/sec)   p_kst 8.464883e-03   p_cons 5.090635e-03   p_joint 1.093645e-04

Joint ci ratio: 2.154508e-01	ci left: 9.845118e-05	ci right 1.225312e-04	k: 330	n:3000000
Cons ci ratio: 3.164472e-02	ci left: 5.008462e-03	ci right 5.169829e-03	k: 15266	n:3000000
KS ci ratio: 2.449435e-02	ci left: 8.361306e-03	ci right 8.568978e-03	k: 25394	n:3000000
ENKUR   3000000 perm   4047 sec   (741 perm/sec)   p_kst 8.464667e-03   p_cons 5.088667e-03   p_joint 1.100000e-04

Joint ci ratio: 2.151260e-01	ci left: 9.843842e-05	ci right 1.224742e-04	k: 331	n:3010000
Cons ci ratio: 3.159200e-02	ci left: 5.008632e-03	ci right 5.169731e-03	k: 15317	n:3010000
KS ci ratio: 2.445588e-02	ci left: 8.359943e-03	ci right 8.567250e-03	k: 25474	n:3010000
ENKUR   3010000 perm   4071 sec   (739 perm/sec)   p_kst 8.463123e-03   p_cons 5.088704e-03   p_joint 1.099668e-04

Joint ci ratio: 2.151261e-01	ci left: 9.811246e-05	ci right 1.220687e-04	k: 331	n:3020000
Cons ci ratio: 3.153026e-02	ci left: 5.011758e-03	ci right 5.172637e-03	k: 15377	n:3020000
KS ci ratio: 2.441422e-02	ci left: 8.360893e-03	ci right 8.567866e-03	k: 25561	n:3020000
ENKUR   3020000 perm   4096 sec   (737 perm/sec)   p_kst 8.463907e-03   p_cons 5.091722e-03   p_joint 1.096026e-04

Joint ci ratio: 2.148028e-01	ci left: 9.810092e-05	ci right 1.220136e-04	k: 332	n:3030000
Cons ci ratio: 3.147605e-02	ci left: 5.012572e-03	ci right 5.173195e-03	k: 15430	n:3030000
KS ci ratio: 2.437612e-02	ci left: 8.359541e-03	ci right 8.566152e-03	k: 25641	n:3030000
ENKUR   3030000 perm   4121 sec   (735 perm/sec)   p_kst 8.462376e-03   p_cons 5.092409e-03   p_joint 1.095710e-04

Joint ci ratio: 2.144810e-01	ci left: 9.808949e-05	ci right 1.219588e-04	k: 333	n:3040000
Cons ci ratio: 3.142519e-02	ci left: 5.012401e-03	ci right 5.172754e-03	k: 15480	n:3040000
KS ci ratio: 2.433629e-02	ci left: 8.359506e-03	ci right 8.565774e-03	k: 25725	n:3040000
ENKUR   3040000 perm   4146 sec   (733 perm/sec)   p_kst 8.462171e-03   p_cons 5.092105e-03   p_joint 1.095395e-04

Joint ci ratio: 2.138417e-01	ci left: 9.838845e-05	ci right 1.222498e-04	k: 335	n:3050000
Cons ci ratio: 3.136645e-02	ci left: 5.014834e-03	ci right 5.174960e-03	k: 15538	n:3050000
KS ci ratio: 2.430284e-02	ci left: 8.355235e-03	ci right 8.561110e-03	k: 25796	n:3050000
ENKUR   3050000 perm   4172 sec   (731 perm/sec)   p_kst 8.457705e-03   p_cons 5.094426e-03   p_joint 1.098361e-04

Joint ci ratio: 2.138418e-01	ci left: 9.806692e-05	ci right 1.218503e-04	k: 335	n:3060000
Cons ci ratio: 3.130904e-02	ci left: 5.016928e-03	ci right 5.176822e-03	k: 15595	n:3060000
KS ci ratio: 2.426431e-02	ci left: 8.354565e-03	ci right 8.560093e-03	k: 25878	n:3060000
ENKUR   3060000 perm   4198 sec   (729 perm/sec)   p_kst 8.456863e-03   p_cons 5.096405e-03   p_joint 1.094771e-04

Joint ci ratio: 2.128934e-01	ci left: 9.867247e-05	ci right 1.224828e-04	k: 338	n:3070000
Cons ci ratio: 3.125095e-02	ci left: 5.019331e-03	ci right 5.178999e-03	k: 15653	n:3070000
KS ci ratio: 2.422268e-02	ci left: 8.356166e-03	ci right 8.561376e-03	k: 25967	n:3070000
ENKUR   3070000 perm   4225 sec   (727 perm/sec)   p_kst 8.458306e-03   p_cons 5.098697e-03   p_joint 1.100977e-04

Joint ci ratio: 2.125801e-01	ci left: 9.865948e-05	ci right 1.224270e-04	k: 339	n:3080000
Cons ci ratio: 3.119518e-02	ci left: 5.021074e-03	ci right 5.180508e-03	k: 15709	n:3080000
KS ci ratio: 2.418594e-02	ci left: 8.354529e-03	ci right 8.559384e-03	k: 26046	n:3080000
ENKUR   3080000 perm   4250 sec   (725 perm/sec)   p_kst 8.456494e-03   p_cons 5.100325e-03   p_joint 1.100649e-04

Joint ci ratio: 2.122682e-01	ci left: 9.864660e-05	ci right 1.223716e-04	k: 340	n:3090000
Cons ci ratio: 3.114864e-02	ci left: 5.019916e-03	ci right 5.179072e-03	k: 15756	n:3090000
KS ci ratio: 2.414797e-02	ci left: 8.353869e-03	ci right 8.558381e-03	k: 26128	n:3090000
ENKUR   3090000 perm   4276 sec   (723 perm/sec)   p_kst 8.455663e-03   p_cons 5.099029e-03   p_joint 1.100324e-04

Joint ci ratio: 2.122682e-01	ci left: 9.832839e-05	ci right 1.219769e-04	k: 340	n:3100000
Cons ci ratio: 3.111517e-02	ci left: 5.014605e-03	ci right 5.173418e-03	k: 15790	n:3100000
KS ci ratio: 2.411157e-02	ci left: 8.352251e-03	ci right 8.556411e-03	k: 26207	n:3100000
ENKUR   3100000 perm   4303 sec   (720 perm/sec)   p_kst 8.453871e-03   p_cons 5.093548e-03   p_joint 1.096774e-04

Joint ci ratio: 2.119576e-01	ci left: 9.831668e-05	ci right 1.219233e-04	k: 341	n:3110000
Cons ci ratio: 3.106505e-02	ci left: 5.014752e-03	ci right 5.173310e-03	k: 15841	n:3110000
KS ci ratio: 2.406979e-02	ci left: 8.354479e-03	ci right 8.558335e-03	k: 26298	n:3110000
ENKUR   3110000 perm   4328 sec   (719 perm/sec)   p_kst 8.455949e-03   p_cons 5.093569e-03   p_joint 1.096463e-04

Joint ci ratio: 2.119577e-01	ci left: 9.800156e-05	ci right 1.215325e-04	k: 341	n:3120000
Cons ci ratio: 3.103087e-02	ci left: 5.009810e-03	ci right 5.168034e-03	k: 15876	n:3120000
KS ci ratio: 2.404110e-02	ci left: 8.347772e-03	ci right 8.551218e-03	k: 26361	n:3120000
ENKUR   3120000 perm   4354 sec   (717 perm/sec)   p_kst 8.449038e-03   p_cons 5.088462e-03   p_joint 1.092949e-04

Joint ci ratio: 2.116485e-01	ci left: 9.799100e-05	ci right 1.214806e-04	k: 342	n:3130000
Cons ci ratio: 3.098310e-02	ci left: 5.009338e-03	ci right 5.167299e-03	k: 15925	n:3130000
KS ci ratio: 2.400563e-02	ci left: 8.345873e-03	ci right 8.548968e-03	k: 26439	n:3130000
ENKUR   3130000 perm   4381 sec   (714 perm/sec)   p_kst 8.446965e-03   p_cons 5.087859e-03   p_joint 1.092652e-04

Joint ci ratio: 2.116485e-01	ci left: 9.767893e-05	ci right 1.210938e-04	k: 342	n:3140000
Cons ci ratio: 3.093167e-02	ci left: 5.010133e-03	ci right 5.167852e-03	k: 15978	n:3140000
KS ci ratio: 2.397398e-02	ci left: 8.341452e-03	ci right 8.544169e-03	k: 26509	n:3140000
ENKUR   3140000 perm   4408 sec   (712 perm/sec)   p_kst 8.442357e-03   p_cons 5.088535e-03   p_joint 1.089172e-04

Joint ci ratio: 2.110341e-01	ci left: 9.797016e-05	ci right 1.213778e-04	k: 344	n:3150000
Cons ci ratio: 3.089114e-02	ci left: 5.007458e-03	ci right 5.164883e-03	k: 16020	n:3150000
KS ci ratio: 2.393972e-02	ci left: 8.338954e-03	ci right 8.541316e-03	k: 26585	n:3150000
ENKUR   3150000 perm   4434 sec   (710 perm/sec)   p_kst 8.439683e-03   p_cons 5.085714e-03   p_joint 1.092063e-04

Joint ci ratio: 2.110342e-01	ci left: 9.766012e-05	ci right 1.209937e-04	k: 344	n:3160000
Cons ci ratio: 3.084305e-02	ci left: 5.007312e-03	ci right 5.164483e-03	k: 16070	n:3160000
KS ci ratio: 2.390018e-02	ci left: 8.340247e-03	ci right 8.542301e-03	k: 26673	n:3160000
ENKUR   3160000 perm   4461 sec   (708 perm/sec)   p_kst 8.440823e-03   p_cons 5.085443e-03   p_joint 1.088608e-04

Joint ci ratio: 2.110342e-01	ci left: 9.735204e-05	ci right 1.206120e-04	k: 344	n:3170000
Cons ci ratio: 3.079999e-02	ci left: 5.005602e-03	ci right 5.162496e-03	k: 16115	n:3170000
KS ci ratio: 2.386399e-02	ci left: 8.339336e-03	ci right 8.541059e-03	k: 26754	n:3170000
ENKUR   3170000 perm   4489 sec   (706 perm/sec)   p_kst 8.439748e-03   p_cons 5.083596e-03   p_joint 1.085174e-04

Joint ci ratio: 2.104251e-01	ci left: 9.764165e-05	ci right 1.208948e-04	k: 346	n:3180000
Cons ci ratio: 3.075042e-02	ci left: 5.006088e-03	ci right 5.162740e-03	k: 16167	n:3180000
KS ci ratio: 2.382438e-02	ci left: 8.340932e-03	ci right 8.542354e-03	k: 26843	n:3180000
ENKUR   3180000 perm   4515 sec   (704 perm/sec)   p_kst 8.441195e-03   p_cons 5.083962e-03   p_joint 1.088050e-04

Joint ci ratio: 2.104251e-01	ci left: 9.733556e-05	ci right 1.205158e-04	k: 346	n:3190000
Cons ci ratio: 3.070108e-02	ci left: 5.006571e-03	ci right 5.162982e-03	k: 16219	n:3190000
KS ci ratio: 2.378719e-02	ci left: 8.340961e-03	ci right 8.542065e-03	k: 26927	n:3190000
ENKUR   3190000 perm   4541 sec   (702 perm/sec)   p_kst 8.441066e-03   p_cons 5.084326e-03   p_joint 1.084639e-04

Joint ci ratio: 2.104252e-01	ci left: 9.703138e-05	ci right 1.201392e-04	k: 346	n:3200000
Cons ci ratio: 3.066145e-02	ci left: 5.003949e-03	ci right 5.160073e-03	k: 16261	n:3200000
KS ci ratio: 2.374707e-02	ci left: 8.343164e-03	ci right 8.543977e-03	k: 27018	n:3200000
ENKUR   3200000 perm   4568 sec   (700 perm/sec)   p_kst 8.443125e-03   p_cons 5.081563e-03   p_joint 1.081250e-04

Joint ci ratio: 2.104252e-01	ci left: 9.672910e-05	ci right 1.197650e-04	k: 346	n:3210000
Cons ci ratio: 3.061820e-02	ci left: 5.002581e-03	ci right 5.158438e-03	k: 16307	n:3210000
KS ci ratio: 2.370540e-02	ci left: 8.346592e-03	ci right 8.547131e-03	k: 27113	n:3210000
ENKUR   3210000 perm   4595 sec   (699 perm/sec)   p_kst 8.446417e-03   p_cons 5.080062e-03   p_joint 1.077882e-04

Joint ci ratio: 2.098214e-01	ci left: 9.701714e-05	ci right 1.200468e-04	k: 348	n:3220000
Cons ci ratio: 3.056199e-02	ci left: 5.005536e-03	ci right 5.161194e-03	k: 16367	n:3220000
KS ci ratio: 2.366745e-02	ci left: 8.347530e-03	ci right 8.547765e-03	k: 27200	n:3220000
ENKUR   3220000 perm   4622 sec   (697 perm/sec)   p_kst 8.447205e-03   p_cons 5.082919e-03   p_joint 1.080745e-04

Joint ci ratio: 2.098214e-01	ci left: 9.671678e-05	ci right 1.196751e-04	k: 348	n:3230000
Cons ci ratio: 3.051542e-02	ci left: 5.005401e-03	ci right 5.160813e-03	k: 16417	n:3230000
KS ci ratio: 2.363230e-02	ci left: 8.346615e-03	ci right 8.546528e-03	k: 27281	n:3230000
ENKUR   3230000 perm   4649 sec   (695 perm/sec)   p_kst 8.446130e-03   p_cons 5.082663e-03   p_joint 1.077399e-04

Joint ci ratio: 2.095215e-01	ci left: 9.671071e-05	ci right 1.196306e-04	k: 349	n:3240000
Cons ci ratio: 3.046255e-02	ci left: 5.007411e-03	ci right 5.162612e-03	k: 16474	n:3240000
KS ci ratio: 2.359644e-02	ci left: 8.346320e-03	ci right 8.545918e-03	k: 27364	n:3240000
ENKUR   3240000 perm   4676 sec   (693 perm/sec)   p_kst 8.445679e-03   p_cons 5.084568e-03   p_joint 1.077160e-04

Joint ci ratio: 2.092228e-01	ci left: 9.670469e-05	ci right 1.195863e-04	k: 350	n:3250000
Cons ci ratio: 3.041089e-02	ci left: 5.009103e-03	ci right 5.164088e-03	k: 16530	n:3250000
KS ci ratio: 2.356247e-02	ci left: 8.344804e-03	ci right 8.544074e-03	k: 27443	n:3250000
ENKUR   3250000 perm   4703 sec   (691 perm/sec)   p_kst 8.444000e-03   p_cons 5.086154e-03   p_joint 1.076923e-04

Joint ci ratio: 2.092228e-01	ci left: 9.640805e-05	ci right 1.192194e-04	k: 350	n:3260000
Cons ci ratio: 3.036593e-02	ci left: 5.008654e-03	ci right 5.163393e-03	k: 16579	n:3260000
KS ci ratio: 2.352908e-02	ci left: 8.342991e-03	ci right 8.541932e-03	k: 27521	n:3260000
ENKUR   3260000 perm   4731 sec   (689 perm/sec)   p_kst 8.442025e-03   p_cons 5.085583e-03   p_joint 1.073620e-04

Joint ci ratio: 2.092229e-01	ci left: 9.611322e-05	ci right 1.188549e-04	k: 350	n:3270000
Cons ci ratio: 3.033125e-02	ci left: 5.004870e-03	ci right 5.159312e-03	k: 16617	n:3270000
KS ci ratio: 2.349326e-02	ci left: 8.343015e-03	ci right 8.541649e-03	k: 27605	n:3270000
ENKUR   3270000 perm   4758 sec   (687 perm/sec)   p_kst 8.441896e-03   p_cons 5.081651e-03   p_joint 1.070336e-04

Joint ci ratio: 2.092229e-01	ci left: 9.582019e-05	ci right 1.184925e-04	k: 350	n:3280000
Cons ci ratio: 3.029669e-02	ci left: 5.001108e-03	ci right 5.155255e-03	k: 16655	n:3280000
KS ci ratio: 2.345931e-02	ci left: 8.341826e-03	ci right 8.540141e-03	k: 27685	n:3280000
ENKUR   3280000 perm   4786 sec   (685 perm/sec)   p_kst 8.440549e-03   p_cons 5.077744e-03   p_joint 1.067073e-04

Joint ci ratio: 2.089255e-01	ci left: 9.581699e-05	ci right 1.184522e-04	k: 351	n:3290000
Cons ci ratio: 3.024222e-02	ci left: 5.004007e-03	ci right 5.157961e-03	k: 16715	n:3290000
KS ci ratio: 2.342721e-02	ci left: 8.339435e-03	ci right 8.537419e-03	k: 27761	n:3290000
ENKUR   3290000 perm   4814 sec   (683 perm/sec)   p_kst 8.437994e-03   p_cons 5.080547e-03   p_joint 1.066869e-04

Joint ci ratio: 2.083344e-01	ci left: 9.610103e-05	ci right 1.187309e-04	k: 353	n:3300000
Cons ci ratio: 3.020344e-02	ci left: 5.001775e-03	ci right 5.155459e-03	k: 16758	n:3300000
KS ci ratio: 2.339227e-02	ci left: 8.339169e-03	ci right 8.536847e-03	k: 27844	n:3300000
ENKUR   3300000 perm   4841 sec   (682 perm/sec)   p_kst 8.437576e-03   p_cons 5.078182e-03   p_joint 1.069697e-04

Joint ci ratio: 2.083345e-01	ci left: 9.581069e-05	ci right 1.183722e-04	k: 353	n:3310000
Cons ci ratio: 3.015758e-02	ci left: 5.001955e-03	ci right 5.155408e-03	k: 16809	n:3310000
KS ci ratio: 2.335707e-02	ci left: 8.339204e-03	ci right 8.536582e-03	k: 27928	n:3310000
ENKUR   3310000 perm   4869 sec   (680 perm/sec)   p_kst 8.437462e-03   p_cons 5.078248e-03   p_joint 1.066465e-04

Joint ci ratio: 2.083345e-01	ci left: 9.552211e-05	ci right 1.180157e-04	k: 353	n:3320000
Cons ci ratio: 3.011912e-02	ci left: 4.999743e-03	ci right 5.152929e-03	k: 16852	n:3320000
KS ci ratio: 2.332622e-02	ci left: 8.336245e-03	ci right 8.533288e-03	k: 28002	n:3320000
ENKUR   3320000 perm   4896 sec   (678 perm/sec)   p_kst 8.434337e-03   p_cons 5.075904e-03   p_joint 1.063253e-04

Joint ci ratio: 2.083345e-01	ci left: 9.523525e-05	ci right 1.176613e-04	k: 353	n:3330000
Cons ci ratio: 3.007544e-02	ci left: 4.999333e-03	ci right 5.152280e-03	k: 16901	n:3330000
KS ci ratio: 2.328923e-02	ci left: 8.337782e-03	ci right 8.534545e-03	k: 28091	n:3330000
ENKUR   3330000 perm   4924 sec   (676 perm/sec)   p_kst 8.435736e-03   p_cons 5.075375e-03   p_joint 1.060060e-04

Joint ci ratio: 2.077485e-01	ci left: 9.551773e-05	ci right 1.179389e-04	k: 355	n:3340000
Cons ci ratio: 3.003195e-02	ci left: 4.998925e-03	ci right 5.151635e-03	k: 16950	n:3340000
KS ci ratio: 2.325657e-02	ci left: 8.336334e-03	ci right 8.532783e-03	k: 28170	n:3340000
ENKUR   3340000 perm   4952 sec   (675 perm/sec)   p_kst 8.434132e-03   p_cons 5.074850e-03   p_joint 1.062874e-04

Joint ci ratio: 2.068786e-01	ci left: 9.608163e-05	ci right 1.185288e-04	k: 358	n:3350000
Cons ci ratio: 2.999219e-02	ci left: 4.997335e-03	ci right 5.149791e-03	k: 16995	n:3350000
KS ci ratio: 2.322073e-02	ci left: 8.337269e-03	ci right 8.533433e-03	k: 28257	n:3350000
ENKUR   3350000 perm   4980 sec   (673 perm/sec)   p_kst 8.434925e-03   p_cons 5.073134e-03   p_joint 1.068657e-04

Joint ci ratio: 2.068786e-01	ci left: 9.579568e-05	ci right 1.181761e-04	k: 358	n:3360000
Cons ci ratio: 2.993670e-02	ci left: 5.001072e-03	ci right 5.153355e-03	k: 17058	n:3360000
KS ci ratio: 2.318671e-02	ci left: 8.337014e-03	ci right 8.532882e-03	k: 28340	n:3360000
ENKUR   3360000 perm   5008 sec   (671 perm/sec)   p_kst 8.434524e-03   p_cons 5.076786e-03   p_joint 1.065476e-04

Joint ci ratio: 2.068786e-01	ci left: 9.551141e-05	ci right 1.178254e-04	k: 358	n:3370000
Cons ci ratio: 2.990259e-02	ci left: 4.997718e-03	ci right 5.149722e-03	k: 17097	n:3370000
KS ci ratio: 2.315489e-02	ci left: 8.335287e-03	ci right 8.530841e-03	k: 28418	n:3370000
ENKUR   3370000 perm   5035 sec   (669 perm/sec)   p_kst 8.432641e-03   p_cons 5.073294e-03   p_joint 1.062315e-04

Joint ci ratio: 2.063047e-01	ci left: 9.578994e-05	ci right 1.180991e-04	k: 360	n:3380000
Cons ci ratio: 2.984148e-02	ci left: 5.003487e-03	ci right 5.155351e-03	k: 17167	n:3380000
KS ci ratio: 2.311911e-02	ci left: 8.336511e-03	ci right 8.531788e-03	k: 28506	n:3380000
ENKUR   3380000 perm   5063 sec   (668 perm/sec)   p_kst 8.433728e-03   p_cons 5.078994e-03   p_joint 1.065089e-04

Joint ci ratio: 2.057356e-01	ci left: 9.606691e-05	ci right 1.183711e-04	k: 362	n:3390000
Cons ci ratio: 2.979030e-02	ci left: 5.006002e-03	ci right 5.157677e-03	k: 17226	n:3390000
KS ci ratio: 2.308064e-02	ci left: 8.339782e-03	ci right 8.534806e-03	k: 28601	n:3390000
ENKUR   3390000 perm   5092 sec   (666 perm/sec)   p_kst 8.436873e-03   p_cons 5.081416e-03   p_joint 1.067847e-04

Joint ci ratio: 2.057356e-01	ci left: 9.578436e-05	ci right 1.180229e-04	k: 362	n:3400000
Cons ci ratio: 2.974025e-02	ci left: 5.008211e-03	ci right 5.159693e-03	k: 17284	n:3400000
KS ci ratio: 2.305372e-02	ci left: 8.334845e-03	ci right 8.529523e-03	k: 28668	n:3400000
ENKUR   3400000 perm   5121 sec   (664 perm/sec)   p_kst 8.431765e-03   p_cons 5.083529e-03   p_joint 1.064706e-04

Joint ci ratio: 2.054528e-01	ci left: 9.578163e-05	ci right 1.179852e-04	k: 363	n:3410000
Cons ci ratio: 2.969991e-02	ci left: 5.007204e-03	ci right 5.158447e-03	k: 17331	n:3410000
KS ci ratio: 2.301881e-02	ci left: 8.335769e-03	ci right 8.530170e-03	k: 28755	n:3410000
ENKUR   3410000 perm   5149 sec   (662 perm/sec)   p_kst 8.432551e-03   p_cons 5.082405e-03   p_joint 1.064516e-04

Joint ci ratio: 2.054529e-01	ci left: 9.550156e-05	ci right 1.176402e-04	k: 363	n:3420000
Cons ci ratio: 2.965117e-02	ci left: 5.009106e-03	ci right 5.160155e-03	k: 17388	n:3420000
KS ci ratio: 2.298848e-02	ci left: 8.333489e-03	ci right 8.527578e-03	k: 28831	n:3420000
ENKUR   3420000 perm   5177 sec   (661 perm/sec)   p_kst 8.430117e-03   p_cons 5.084211e-03   p_joint 1.061404e-04

Joint ci ratio: 2.051712e-01	ci left: 9.549969e-05	ci right 1.176037e-04	k: 364	n:3430000
Cons ci ratio: 2.960949e-02	ci left: 5.008682e-03	ci right 5.159502e-03	k: 17437	n:3430000
KS ci ratio: 2.295426e-02	ci left: 8.334122e-03	ci right 8.527933e-03	k: 28917	n:3430000
ENKUR   3430000 perm   5206 sec   (659 perm/sec)   p_kst 8.430612e-03   p_cons 5.083673e-03   p_joint 1.061224e-04

Joint ci ratio: 2.051713e-01	ci left: 9.522207e-05	ci right 1.172618e-04	k: 364	n:3440000
Cons ci ratio: 2.957223e-02	ci left: 5.006818e-03	ci right 5.157389e-03	k: 17481	n:3440000
KS ci ratio: 2.293057e-02	ci left: 8.327237e-03	ci right 8.520685e-03	k: 28977	n:3440000
ENKUR   3440000 perm   5234 sec   (657 perm/sec)   p_kst 8.423547e-03   p_cons 5.081686e-03   p_joint 1.058140e-04

Joint ci ratio: 2.043332e-01	ci left: 9.577105e-05	ci right 1.178360e-04	k: 367	n:3450000
Cons ci ratio: 2.952411e-02	ci left: 5.008706e-03	ci right 5.159083e-03	k: 17538	n:3450000
KS ci ratio: 2.289622e-02	ci left: 8.328173e-03	ci right 8.521349e-03	k: 29064	n:3450000
ENKUR   3450000 perm   5261 sec   (656 perm/sec)   p_kst 8.424348e-03   p_cons 5.083478e-03   p_joint 1.063768e-04

Joint ci ratio: 2.043332e-01	ci left: 9.549426e-05	ci right 1.174955e-04	k: 367	n:3460000
Cons ci ratio: 2.948718e-02	ci left: 5.006852e-03	ci right 5.156983e-03	k: 17582	n:3460000
KS ci ratio: 2.287032e-02	ci left: 8.323069e-03	ci right 8.515906e-03	k: 29130	n:3460000
ENKUR   3460000 perm   5290 sec   (654 perm/sec)   p_kst 8.419075e-03   p_cons 5.081503e-03   p_joint 1.060694e-04

Joint ci ratio: 2.043333e-01	ci left: 9.521906e-05	ci right 1.171569e-04	k: 367	n:3470000
Cons ci ratio: 2.944618e-02	ci left: 5.006440e-03	ci right 5.156347e-03	k: 17631	n:3470000
KS ci ratio: 2.283939e-02	ci left: 8.321719e-03	ci right 8.514261e-03	k: 29209	n:3470000
ENKUR   3470000 perm   5320 sec   (652 perm/sec)   p_kst 8.417579e-03   p_cons 5.080980e-03   p_joint 1.057637e-04

Joint ci ratio: 2.040562e-01	ci left: 9.521810e-05	ci right 1.171222e-04	k: 368	n:3480000
Cons ci ratio: 2.941205e-02	ci left: 5.003749e-03	ci right 5.153398e-03	k: 17672	n:3480000
KS ci ratio: 2.280977e-02	ci left: 8.319521e-03	ci right 8.511758e-03	k: 29285	n:3480000
ENKUR   3480000 perm   5349 sec   (651 perm/sec)   p_kst 8.415230e-03   p_cons 5.078161e-03   p_joint 1.057471e-04

Joint ci ratio: 2.037803e-01	ci left: 9.521717e-05	ci right 1.170878e-04	k: 369	n:3490000
Cons ci ratio: 2.936887e-02	ci left: 5.004202e-03	ci right 5.153641e-03	k: 17724	n:3490000
KS ci ratio: 2.277400e-02	ci left: 8.321894e-03	ci right 8.513880e-03	k: 29377	n:3490000
ENKUR   3490000 perm   5378 sec   (649 perm/sec)   p_kst 8.417479e-03   p_cons 5.078510e-03   p_joint 1.057307e-04

Joint ci ratio: 2.035054e-01	ci left: 9.521627e-05	ci right 1.170535e-04	k: 370	n:3500000
Cons ci ratio: 2.932091e-02	ci left: 5.006354e-03	ci right 5.155609e-03	k: 17782	n:3500000
KS ci ratio: 2.274540e-02	ci left: 8.319139e-03	ci right 8.510818e-03	k: 29451	n:3500000
ENKUR   3500000 perm   5407 sec   (647 perm/sec)   p_kst 8.414571e-03   p_cons 5.080571e-03   p_joint 1.057143e-04

Joint ci ratio: 2.035055e-01	ci left: 9.494500e-05	ci right 1.167200e-04	k: 370	n:3510000
Cons ci ratio: 2.928390e-02	ci left: 5.004817e-03	ci right 5.153836e-03	k: 17827	n:3510000
KS ci ratio: 2.271497e-02	ci left: 8.317817e-03	ci right 8.509206e-03	k: 29530	n:3510000
ENKUR   3510000 perm   5436 sec   (646 perm/sec)   p_kst 8.413105e-03   p_cons 5.078917e-03   p_joint 1.054131e-04

Joint ci ratio: 2.032318e-01	ci left: 9.494489e-05	ci right 1.166870e-04	k: 371	n:3520000
Cons ci ratio: 2.925280e-02	ci left: 5.001316e-03	ci right 5.150069e-03	k: 17865	n:3520000
KS ci ratio: 2.268583e-02	ci left: 8.315655e-03	ci right 8.506746e-03	k: 29606	n:3520000
ENKUR   3520000 perm   5465 sec   (644 perm/sec)   p_kst 8.410795e-03   p_cons 5.075284e-03   p_joint 1.053977e-04

Joint ci ratio: 2.029592e-01	ci left: 9.494481e-05	ci right 1.166541e-04	k: 372	n:3530000
Cons ci ratio: 2.920049e-02	ci left: 5.005145e-03	ci right 5.153742e-03	k: 17929	n:3530000
KS ci ratio: 2.265487e-02	ci left: 8.314914e-03	ci right 8.505724e-03	k: 29687	n:3530000
ENKUR   3530000 perm   5493 sec   (643 perm/sec)   p_kst 8.409915e-03   p_cons 5.079037e-03   p_joint 1.053824e-04

Joint ci ratio: 2.026876e-01	ci left: 9.494474e-05	ci right 1.166214e-04	k: 373	n:3540000
Cons ci ratio: 2.915823e-02	ci left: 5.005589e-03	ci right 5.153980e-03	k: 17981	n:3540000
KS ci ratio: 2.262289e-02	ci left: 8.315020e-03	ci right 8.505559e-03	k: 29771	n:3540000
ENKUR   3540000 perm   5523 sec   (641 perm/sec)   p_kst 8.409887e-03   p_cons 5.079379e-03   p_joint 1.053672e-04

Joint ci ratio: 2.021478e-01	ci left: 9.521212e-05	ci right 1.168848e-04	k: 375	n:3550000
Cons ci ratio: 2.912509e-02	ci left: 5.002954e-03	ci right 5.151095e-03	k: 18022	n:3550000
KS ci ratio: 2.259409e-02	ci left: 8.312885e-03	ci right 8.503130e-03	k: 29847	n:3550000
ENKUR   3550000 perm   5553 sec   (639 perm/sec)   p_kst 8.407606e-03   p_cons 5.076620e-03   p_joint 1.056338e-04

Joint ci ratio: 2.018796e-01	ci left: 9.521136e-05	ci right 1.168515e-04	k: 376	n:3560000
Cons ci ratio: 2.908801e-02	ci left: 5.001728e-03	ci right 5.149641e-03	k: 18068	n:3560000
KS ci ratio: 2.256503e-02	ci left: 8.311041e-03	ci right 8.500996e-03	k: 29924	n:3560000
ENKUR   3560000 perm   5584 sec   (638 perm/sec)   p_kst 8.405618e-03   p_cons 5.075281e-03   p_joint 1.056180e-04

Joint ci ratio: 2.016123e-01	ci left: 9.521062e-05	ci right 1.168184e-04	k: 377	n:3570000
Cons ci ratio: 2.905349e-02	ci left: 4.999674e-03	ci right 5.147349e-03	k: 18111	n:3570000
KS ci ratio: 2.253418e-02	ci left: 8.310601e-03	ci right 8.500282e-03	k: 30006	n:3570000
ENKUR   3570000 perm   5613 sec   (636 perm/sec)   p_kst 8.405042e-03   p_cons 5.073109e-03   p_joint 1.056022e-04

Joint ci ratio: 2.010811e-01	ci left: 9.547517e-05	ci right 1.170789e-04	k: 379	n:3580000
Cons ci ratio: 2.901829e-02	ci left: 4.997910e-03	ci right 5.145350e-03	k: 18155	n:3580000
KS ci ratio: 2.250573e-02	ci left: 8.308496e-03	ci right 8.497887e-03	k: 30082	n:3580000
ENKUR   3580000 perm   5643 sec   (634 perm/sec)   p_kst 8.402793e-03   p_cons 5.071229e-03   p_joint 1.058659e-04

Joint ci ratio: 2.010811e-01	ci left: 9.520922e-05	ci right 1.167528e-04	k: 379	n:3590000
Cons ci ratio: 2.898722e-02	ci left: 4.994773e-03	ci right 5.141960e-03	k: 18194	n:3590000
KS ci ratio: 2.248151e-02	ci left: 8.303356e-03	ci right 8.492424e-03	k: 30147	n:3590000
ENKUR   3590000 perm   5673 sec   (633 perm/sec)   p_kst 8.397493e-03   p_cons 5.067967e-03   p_joint 1.055710e-04

Joint ci ratio: 2.010811e-01	ci left: 9.494475e-05	ci right 1.164285e-04	k: 379	n:3600000
Cons ci ratio: 2.894190e-02	ci left: 4.996617e-03	ci right 5.143625e-03	k: 18251	n:3600000
KS ci ratio: 2.244988e-02	ci left: 8.303770e-03	ci right 8.492578e-03	k: 30232	n:3600000
ENKUR   3600000 perm   5704 sec   (631 perm/sec)   p_kst 8.397778e-03   p_cons 5.069722e-03   p_joint 1.052778e-04

Joint ci ratio: 2.008171e-01	ci left: 9.494481e-05	ci right 1.163969e-04	k: 380	n:3610000
Cons ci ratio: 2.891187e-02	ci left: 4.993226e-03	ci right 5.139979e-03	k: 18289	n:3610000
KS ci ratio: 2.242361e-02	ci left: 8.300325e-03	ci right 8.488830e-03	k: 30303	n:3610000
ENKUR   3610000 perm   5734 sec   (630 perm/sec)   p_kst 8.394183e-03   p_cons 5.066205e-03   p_joint 1.052632e-04

Joint ci ratio: 2.002920e-01	ci left: 9.520728e-05	ci right 1.166556e-04	k: 382	n:3620000
Cons ci ratio: 2.886848e-02	ci left: 4.994517e-03	ci right 5.141084e-03	k: 18344	n:3620000
KS ci ratio: 2.239037e-02	ci left: 8.302119e-03	ci right 8.490382e-03	k: 30393	n:3620000
ENKUR   3620000 perm   5764 sec   (628 perm/sec)   p_kst 8.395856e-03   p_cons 5.067403e-03   p_joint 1.055249e-04

Joint ci ratio: 2.002920e-01	ci left: 9.494500e-05	ci right 1.163342e-04	k: 382	n:3630000
Cons ci ratio: 2.882607e-02	ci left: 4.995526e-03	ci right 5.141904e-03	k: 18398	n:3630000
KS ci ratio: 2.236578e-02	ci left: 8.297602e-03	ci right 8.485553e-03	k: 30460	n:3630000
ENKUR   3630000 perm   5795 sec   (626 perm/sec)   p_kst 8.391185e-03   p_cons 5.068320e-03   p_joint 1.052342e-04

Joint ci ratio: 2.002921e-01	ci left: 9.468416e-05	ci right 1.160146e-04	k: 382	n:3640000
Cons ci ratio: 2.878934e-02	ci left: 4.994621e-03	ci right 5.140783e-03	k: 18445	n:3640000
KS ci ratio: 2.233574e-02	ci left: 8.297208e-03	ci right 8.484894e-03	k: 30542	n:3640000
ENKUR   3640000 perm   5826 sec   (625 perm/sec)   p_kst 8.390659e-03   p_cons 5.067308e-03   p_joint 1.049451e-04

Joint ci ratio: 1.995122e-01	ci left: 9.520553e-05	ci right 1.165597e-04	k: 385	n:3650000
Cons ci ratio: 2.874259e-02	ci left: 4.997258e-03	ci right 5.143255e-03	k: 18505	n:3650000
KS ci ratio: 2.230583e-02	ci left: 8.296816e-03	ci right 8.484239e-03	k: 30624	n:3650000
ENKUR   3650000 perm   5856 sec   (623 perm/sec)   p_kst 8.390137e-03   p_cons 5.069863e-03   p_joint 1.054795e-04

Joint ci ratio: 1.995122e-01	ci left: 9.494541e-05	ci right 1.162413e-04	k: 385	n:3660000
Cons ci ratio: 2.870540e-02	ci left: 4.996625e-03	ci right 5.142412e-03	k: 18553	n:3660000
KS ci ratio: 2.227164e-02	ci left: 8.299687e-03	ci right 8.486884e-03	k: 30718	n:3660000
ENKUR   3660000 perm   5885 sec   (622 perm/sec)   p_kst 8.392896e-03   p_cons 5.069126e-03   p_joint 1.051913e-04

Joint ci ratio: 1.992543e-01	ci left: 9.494558e-05	ci right 1.162106e-04	k: 386	n:3670000
Cons ci ratio: 2.866293e-02	ci left: 4.997889e-03	ci right 5.143493e-03	k: 18608	n:3670000
KS ci ratio: 2.224781e-02	ci left: 8.294955e-03	ci right 8.481843e-03	k: 30784	n:3670000
ENKUR   3670000 perm   5916 sec   (620 perm/sec)   p_kst 8.388011e-03   p_cons 5.070300e-03   p_joint 1.051771e-04

Joint ci ratio: 1.992543e-01	ci left: 9.468757e-05	ci right 1.158948e-04	k: 386	n:3680000
Cons ci ratio: 2.862836e-02	ci left: 4.996448e-03	ci right 5.141832e-03	k: 18653	n:3680000
KS ci ratio: 2.221788e-02	ci left: 8.294844e-03	ci right 8.481475e-03	k: 30867	n:3680000
ENKUR   3680000 perm   5946 sec   (619 perm/sec)   p_kst 8.387772e-03   p_cons 5.068750e-03   p_joint 1.048913e-04

Joint ci ratio: 1.992543e-01	ci left: 9.443097e-05	ci right 1.155807e-04	k: 386	n:3690000
Cons ci ratio: 2.858316e-02	ci left: 4.998783e-03	ci right 5.144001e-03	k: 18712	n:3690000
KS ci ratio: 2.218771e-02	ci left: 8.295002e-03	ci right 8.481380e-03	k: 30951	n:3690000
ENKUR   3690000 perm   5976 sec   (617 perm/sec)   p_kst 8.387805e-03   p_cons 5.071003e-03   p_joint 1.046070e-04

Joint ci ratio: 1.989974e-01	ci left: 9.443254e-05	ci right 1.155521e-04	k: 387	n:3700000
Cons ci ratio: 2.854429e-02	ci left: 4.998958e-03	ci right 5.143981e-03	k: 18763	n:3700000
KS ci ratio: 2.216163e-02	ci left: 8.292204e-03	ci right 8.478297e-03	k: 31024	n:3700000
ENKUR   3700000 perm   6008 sec   (616 perm/sec)   p_kst 8.384865e-03   p_cons 5.071081e-03   p_joint 1.045946e-04

Joint ci ratio: 1.989974e-01	ci left: 9.417801e-05	ci right 1.152406e-04	k: 387	n:3710000
Cons ci ratio: 2.850482e-02	ci left: 4.999400e-03	ci right 5.144232e-03	k: 18815	n:3710000
KS ci ratio: 2.212953e-02	ci left: 8.293977e-03	ci right 8.479837e-03	k: 31114	n:3710000
ENKUR   3710000 perm   6038 sec   (614 perm/sec)   p_kst 8.386523e-03   p_cons 5.071429e-03   p_joint 1.043127e-04

Joint ci ratio: 1.989974e-01	ci left: 9.392484e-05	ci right 1.149308e-04	k: 387	n:3720000
Cons ci ratio: 2.846702e-02	ci left: 4.999305e-03	ci right 5.143940e-03	k: 18865	n:3720000
KS ci ratio: 2.209972e-02	ci left: 8.294137e-03	ci right 8.479747e-03	k: 31198	n:3720000
ENKUR   3720000 perm   6068 sec   (613 perm/sec)   p_kst 8.386559e-03   p_cons 5.071237e-03   p_joint 1.040323e-04

Joint ci ratio: 1.987415e-01	ci left: 9.392778e-05	ci right 1.149041e-04	k: 388	n:3730000
Cons ci ratio: 2.842258e-02	ci left: 5.001608e-03	ci right 5.146079e-03	k: 18924	n:3730000
KS ci ratio: 2.206754e-02	ci left: 8.296163e-03	ci right 8.481545e-03	k: 31289	n:3730000
ENKUR   3730000 perm   6099 sec   (612 perm/sec)   p_kst 8.388472e-03   p_cons 5.073458e-03   p_joint 1.040214e-04

Joint ci ratio: 1.984865e-01	ci left: 9.393072e-05	ci right 1.148776e-04	k: 389	n:3740000
Cons ci ratio: 2.838812e-02	ci left: 5.000447e-03	ci right 5.144706e-03	k: 18970	n:3740000
KS ci ratio: 2.203267e-02	ci left: 8.300306e-03	ci right 8.485483e-03	k: 31388	n:3740000
ENKUR   3740000 perm   6131 sec   (610 perm/sec)   p_kst 8.392513e-03   p_cons 5.072193e-03   p_joint 1.040107e-04

Joint ci ratio: 1.982326e-01	ci left: 9.393366e-05	ci right 1.148511e-04	k: 390	n:3750000
Cons ci ratio: 2.835678e-02	ci left: 4.998233e-03	ci right 5.142267e-03	k: 19012	n:3750000
KS ci ratio: 2.199233e-02	ci left: 8.308670e-03	ci right 8.493690e-03	k: 31503	n:3750000
ENKUR   3750000 perm   6161 sec   (609 perm/sec)   p_kst 8.400800e-03   p_cons 5.069867e-03   p_joint 1.040000e-04

Joint ci ratio: 1.982326e-01	ci left: 9.368383e-05	ci right 1.145457e-04	k: 390	n:3760000
Cons ci ratio: 2.831808e-02	ci left: 4.998671e-03	ci right 5.142518e-03	k: 19064	n:3760000
KS ci ratio: 2.196657e-02	ci left: 8.306145e-03	ci right 8.490890e-03	k: 31577	n:3760000
ENKUR   3760000 perm   6193 sec   (607 perm/sec)   p_kst 8.398138e-03   p_cons 5.070213e-03   p_joint 1.037234e-04

Joint ci ratio: 1.974764e-01	ci left: 9.419168e-05	ci right 1.150770e-04	k: 393	n:3770000
Cons ci ratio: 2.827879e-02	ci left: 4.999371e-03	ci right 5.143035e-03	k: 19117	n:3770000
KS ci ratio: 2.193602e-02	ci left: 8.307327e-03	ci right 8.491838e-03	k: 31665	n:3770000
ENKUR   3770000 perm   6224 sec   (606 perm/sec)   p_kst 8.399204e-03   p_cons 5.070822e-03   p_joint 1.042440e-04

Joint ci ratio: 1.964815e-01	ci left: 9.494851e-05	ci right 1.158828e-04	k: 397	n:3780000
Cons ci ratio: 2.824485e-02	ci left: 4.998228e-03	ci right 5.141685e-03	k: 19163	n:3780000
KS ci ratio: 2.190872e-02	ci left: 8.306135e-03	ci right 8.490387e-03	k: 31744	n:3780000
ENKUR   3780000 perm   6254 sec   (604 perm/sec)   p_kst 8.397884e-03   p_cons 5.069577e-03   p_joint 1.050265e-04

Joint ci ratio: 8.964914e-02	ci left: 4.816131e-04	ci right 5.270712e-04	k: 1910	n:3790000
Cons ci ratio: 2.547986e-02	ci left: 6.127249e-03	ci right 6.285644e-03	k: 23521	n:3790000
KS ci ratio: 2.187702e-02	ci left: 8.308361e-03	ci right 8.492392e-03	k: 31836	n:3790000
ENKUR   3790000 perm   6285 sec   (603 perm/sec)   p_kst 8.400000e-03   p_cons 6.206069e-03   p_joint 5.039578e-04

Outputting figure to mutsig2_images.part000000000057/ENKUR.3_795_3790000_0.0084_0.0062061_0.00050396.png
                gene_name: ENKUR
               theta_stop: 0.090 
                    nperm: 3790000 
                     p_ks: 0.0084 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0063 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00048 
    ci_joint_bounds_right: 0.00053 

Current progress: 68 percent done.
ENO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
ENO1   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.341000e-01   p_cons 7.452000e-01   p_joint 5.704000e-01

Outputting figure to mutsig2_images.part000000000057/ENO1.3_1349_10000_0.4341_0.7452_0.5704.png
                gene_name: ENO1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 69 percent done.
ENTPD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
ENTPD6   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.573000e-01   p_cons 1.000000e-02   p_joint 4.900000e-02

Joint ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
Cons ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
KS ci ratio: 3.752640e-02	ci left: 3.463237e-01	ci right 3.596191e-01	k: 7059	n:20000
ENTPD6   20000 perm   4 sec   (5430 perm/sec)   p_kst 3.529500e-01   p_cons 9.950000e-03   p_joint 1.965000e-02

Joint ci ratio: 1.599248e-01	ci left: 1.806137e-02	ci right 2.123262e-02	k: 588	n:30000
Cons ci ratio: 2.251832e-01	ci left: 8.873598e-03	ci right 1.115613e-02	k: 299	n:30000
KS ci ratio: 3.043554e-02	ci left: 3.506125e-01	ci right 3.614821e-01	k: 10681	n:30000
ENTPD6   30000 perm   6 sec   (5116 perm/sec)   p_kst 3.560333e-01   p_cons 9.966667e-03   p_joint 1.960000e-02

Joint ci ratio: 1.257964e-01	ci left: 2.220724e-02	ci right 2.521245e-02	k: 947	n:40000
Cons ci ratio: 1.955095e-01	ci left: 8.976763e-03	ci right 1.094536e-02	k: 397	n:40000
KS ci ratio: 2.624290e-02	ci left: 3.533496e-01	ci right 3.627710e-01	k: 14322	n:40000
ENTPD6   40000 perm   8 sec   (4931 perm/sec)   p_kst 3.580500e-01   p_cons 9.925000e-03   p_joint 2.367500e-02

Joint ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
Cons ci ratio: 1.751363e-01	ci left: 9.050745e-03	ci right 1.080686e-02	k: 495	n:50000
KS ci ratio: 2.352837e-02	ci left: 3.527590e-01	ci right 3.611777e-01	k: 17848	n:50000
ENTPD6   50000 perm   10 sec   (4786 perm/sec)   p_kst 3.569600e-01   p_cons 9.900000e-03   p_joint 2.532000e-02

Joint ci ratio: 6.979313e-02	ci left: 4.820401e-02	ci right 5.170635e-02	k: 2996	n:60000
Cons ci ratio: 1.618384e-01	ci left: 8.899230e-03	ci right 1.048207e-02	k: 580	n:60000
KS ci ratio: 2.137025e-02	ci left: 3.554428e-01	ci right 3.631375e-01	k: 21557	n:60000
ENTPD6   60000 perm   13 sec   (4667 perm/sec)   p_kst 3.592833e-01   p_cons 9.666667e-03   p_joint 4.993333e-02

Joint ci ratio: 7.103863e-02	ci left: 4.020292e-02	ci right 4.317808e-02	k: 2917	n:70000
Cons ci ratio: 1.493705e-01	ci left: 9.014696e-03	ci right 1.048351e-02	k: 681	n:70000
KS ci ratio: 1.980221e-02	ci left: 3.553311e-01	ci right 3.624521e-01	k: 25122	n:70000
ENTPD6   70000 perm   15 sec   (4562 perm/sec)   p_kst 3.588857e-01   p_cons 9.728571e-03   p_joint 4.167143e-02

Joint ci ratio: 6.471677e-02	ci left: 4.242911e-02	ci right 4.527909e-02	k: 3507	n:80000
Cons ci ratio: 1.398529e-01	ci left: 9.044482e-03	ci right 1.041642e-02	k: 777	n:80000
KS ci ratio: 1.854694e-02	ci left: 3.549762e-01	ci right 3.616341e-01	k: 28664	n:80000
ENTPD6   80000 perm   18 sec   (4473 perm/sec)   p_kst 3.583000e-01   p_cons 9.712500e-03   p_joint 4.383750e-02

Joint ci ratio: 6.467076e-02	ci left: 3.795235e-02	ci right 4.049968e-02	k: 3529	n:90000
Cons ci ratio: 1.327963e-01	ci left: 8.951757e-03	ci right 1.023570e-02	k: 862	n:90000
KS ci ratio: 1.748416e-02	ci left: 3.552218e-01	ci right 3.614984e-01	k: 32252	n:90000
ENTPD6   90000 perm   21 sec   (4388 perm/sec)   p_kst 3.583556e-01   p_cons 9.577778e-03   p_joint 3.921111e-02

Joint ci ratio: 6.047655e-02	ci left: 3.909930e-02	ci right 4.154745e-02	k: 4031	n:100000
Cons ci ratio: 1.270488e-01	ci left: 8.830550e-03	ci right 1.003816e-02	k: 942	n:100000
KS ci ratio: 1.660413e-02	ci left: 3.549080e-01	ci right 3.608602e-01	k: 35788	n:100000
ENTPD6   100000 perm   23 sec   (4306 perm/sec)   p_kst 3.578800e-01   p_cons 9.420000e-03   p_joint 4.031000e-02

Joint ci ratio: 6.100942e-02	ci left: 3.506804e-02	ci right 3.728377e-02	k: 3978	n:110000
Cons ci ratio: 1.216286e-01	ci left: 8.785266e-03	ci right 9.931735e-03	k: 1028	n:110000
KS ci ratio: 1.584330e-02	ci left: 3.547033e-01	ci right 3.603769e-01	k: 39329	n:110000
ENTPD6   110000 perm   26 sec   (4235 perm/sec)   p_kst 3.575364e-01   p_cons 9.345455e-03   p_joint 3.616364e-02

Joint ci ratio: 5.353650e-02	ci left: 4.162056e-02	ci right 4.391827e-02	k: 5131	n:120000
Cons ci ratio: 1.169535e-01	ci left: 8.732262e-03	ci right 9.824984e-03	k: 1112	n:120000
KS ci ratio: 1.516452e-02	ci left: 3.549540e-01	ci right 3.603862e-01	k: 42920	n:120000
ENTPD6   120000 perm   29 sec   (4163 perm/sec)   p_kst 3.576667e-01   p_cons 9.266667e-03   p_joint 4.275833e-02

Joint ci ratio: 5.290807e-02	ci left: 3.944242e-02	ci right 4.159352e-02	k: 5266	n:130000
Cons ci ratio: 1.126841e-01	ci left: 8.703084e-03	ci right 9.749753e-03	k: 1198	n:130000
KS ci ratio: 1.454932e-02	ci left: 3.557005e-01	ci right 3.609212e-01	k: 46580	n:130000
ENTPD6   130000 perm   32 sec   (4102 perm/sec)   p_kst 3.583077e-01   p_cons 9.215385e-03   p_joint 4.050769e-02

Joint ci ratio: 6.240165e-02	ci left: 2.655814e-02	ci right 2.827579e-02	k: 3837	n:140000
Cons ci ratio: 1.087652e-01	ci left: 8.692597e-03	ci right 9.699317e-03	k: 1286	n:140000
KS ci ratio: 1.404890e-02	ci left: 3.548534e-01	ci right 3.598811e-01	k: 50031	n:140000
ENTPD6   140000 perm   35 sec   (4037 perm/sec)   p_kst 3.573643e-01   p_cons 9.185714e-03   p_joint 2.740714e-02

Joint ci ratio: 5.053959e-02	ci left: 3.758462e-02	ci right 3.953993e-02	k: 5783	n:150000
Cons ci ratio: 1.046920e-01	ci left: 8.774960e-03	ci right 9.750817e-03	k: 1388	n:150000
KS ci ratio: 1.356637e-02	ci left: 3.551473e-01	ci right 3.600049e-01	k: 53636	n:150000
ENTPD6   150000 perm   38 sec   (3980 perm/sec)   p_kst 3.575733e-01   p_cons 9.253333e-03   p_joint 3.855333e-02

Joint ci ratio: 5.083128e-02	ci left: 3.492580e-02	ci right 3.675357e-02	k: 5733	n:160000
Cons ci ratio: 1.010445e-01	ci left: 8.847642e-03	ci right 9.795266e-03	k: 1490	n:160000
KS ci ratio: 1.314716e-02	ci left: 3.548204e-01	ci right 3.595223e-01	k: 57147	n:160000
ENTPD6   160000 perm   41 sec   (3916 perm/sec)   p_kst 3.571687e-01   p_cons 9.312500e-03   p_joint 3.583125e-02

Joint ci ratio: 4.913560e-02	ci left: 3.520081e-02	ci right 3.697977e-02	k: 6134	n:170000
Cons ci ratio: 9.828432e-02	ci left: 8.814722e-03	ci right 9.731542e-03	k: 1575	n:170000
KS ci ratio: 1.275703e-02	ci left: 3.548042e-01	ci right 3.593654e-01	k: 60704	n:170000
ENTPD6   170000 perm   44 sec   (3856 perm/sec)   p_kst 3.570824e-01   p_cons 9.264706e-03   p_joint 3.608235e-02

Outputting figure to mutsig2_images.part000000000057/ENTPD6.3_1518_170000_0.35708_0.0092647_0.036082.png
                gene_name: ENTPD6
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 70 percent done.
ENTPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
Cons ci ratio: 2.873093e-02	ci left: 6.410619e-01	ci right 6.598504e-01	k: 6505	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
ENTPD7   10000 perm   2 sec   (5899 perm/sec)   p_kst 2.666000e-01   p_cons 6.505000e-01   p_joint 3.467000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD7.3_1863_10000_0.2666_0.6505_0.3467.png
                gene_name: ENTPD7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 72 percent done.
EPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
Cons ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
EPO   10000 perm   2 sec   (6347 perm/sec)   p_kst 1.783000e-01   p_cons 1.785000e-01   p_joint 2.196000e-01

Outputting figure to mutsig2_images.part000000000057/EPO.3_602_10000_0.1783_0.1785_0.2196.png
                gene_name: EPO
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 73 percent done.
EPS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 7.284938e-03	ci left: 9.629948e-01	ci right 9.701301e-01	k: 9667	n:10000
EPS15   10000 perm   2 sec   (5798 perm/sec)   p_kst 9.667000e-01   p_cons 4.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS15.3_2889_10000_0.9667_0.4851_1.png
                gene_name: EPS15
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
EPYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
KS ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
EPYC   10000 perm   1 sec   (6715 perm/sec)   p_kst 8.849000e-01   p_cons 6.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPYC.3_993_10000_0.8849_0.6214_1.png
                gene_name: EPYC
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ERBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
Cons ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
ERBB3   10000 perm   2 sec   (4913 perm/sec)   p_kst 2.610000e-02   p_cons 6.239000e-01   p_joint 4.540000e-02

Joint ci ratio: 6.476770e-02	ci left: 1.497631e-01	ci right 1.598375e-01	k: 3095	n:20000
Cons ci ratio: 2.139647e-02	ci left: 6.198533e-01	ci right 6.333099e-01	k: 12532	n:20000
KS ci ratio: 1.773270e-01	ci left: 2.173197e-02	ci right 2.600799e-02	k: 476	n:20000
ERBB3   20000 perm   5 sec   (4430 perm/sec)   p_kst 2.380000e-02   p_cons 6.266000e-01   p_joint 1.547500e-01

Joint ci ratio: 5.432277e-02	ci left: 1.438675e-01	ci right 1.519342e-01	k: 4436	n:30000
Cons ci ratio: 1.762132e-02	ci left: 6.170530e-01	ci right 6.280565e-01	k: 18677	n:30000
KS ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
ERBB3   30000 perm   7 sec   (4246 perm/sec)   p_kst 2.406667e-02   p_cons 6.225667e-01   p_joint 1.478667e-01

Joint ci ratio: 5.363681e-02	ci left: 1.146314e-01	ci right 1.209742e-01	k: 4711	n:40000
Cons ci ratio: 1.569545e-02	ci left: 6.044732e-01	ci right 6.140609e-01	k: 24371	n:40000
KS ci ratio: 1.237396e-01	ci left: 2.295860e-02	ci right 2.601097e-02	k: 978	n:40000
ERBB3   40000 perm   10 sec   (4150 perm/sec)   p_kst 2.445000e-02   p_cons 6.092750e-01   p_joint 1.177750e-01

Joint ci ratio: 4.872283e-02	ci left: 1.118204e-01	ci right 1.174245e-01	k: 5730	n:50000
Cons ci ratio: 1.400948e-02	ci left: 6.059690e-01	ci right 6.145382e-01	k: 30513	n:50000
KS ci ratio: 1.044453e-01	ci left: 2.596711e-02	ci right 2.884811e-02	k: 1369	n:50000
ERBB3   50000 perm   12 sec   (4059 perm/sec)   p_kst 2.738000e-02   p_cons 6.102600e-01   p_joint 1.146000e-01

Joint ci ratio: 5.135342e-02	ci left: 8.623901e-02	ci right 9.080088e-02	k: 5310	n:60000
Cons ci ratio: 1.278916e-02	ci left: 6.063341e-01	ci right 6.141552e-01	k: 36615	n:60000
KS ci ratio: 9.649801e-02	ci left: 2.547354e-02	ci right 2.807251e-02	k: 1605	n:60000
ERBB3   60000 perm   15 sec   (3987 perm/sec)   p_kst 2.675000e-02   p_cons 6.102500e-01   p_joint 8.850000e-02

Outputting figure to mutsig2_images.part000000000057/ERBB3.3_4272_60000_0.02675_0.61025_0.0885.png
                gene_name: ERBB3
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 77 percent done.
ENO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.049740e-02	ci left: 6.133161e-01	ci right 6.324122e-01	k: 6229	n:10000
Cons ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
KS ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
ENO3   10000 perm   2 sec   (6288 perm/sec)   p_kst 5.943000e-01   p_cons 5.488000e-01   p_joint 6.229000e-01

Outputting figure to mutsig2_images.part000000000057/ENO3.2_1349_10000_0.5943_0.5488_0.6229.png
                gene_name: ENO3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 79 percent done.
ENOSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
Cons ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
KS ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
ENOSF1   10000 perm   2 sec   (6366 perm/sec)   p_kst 4.040000e-01   p_cons 3.988000e-01   p_joint 6.863000e-01

Outputting figure to mutsig2_images.part000000000057/ENOSF1.2_1540_10000_0.404_0.3988_0.6863.png
                gene_name: ENOSF1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 80 percent done.
ENPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
Cons ci ratio: 3.614601e-02	ci left: 5.305716e-01	ci right 5.502048e-01	k: 5404	n:10000
KS ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
ENPP6   10000 perm   2 sec   (6262 perm/sec)   p_kst 3.503000e-01   p_cons 5.404000e-01   p_joint 9.299000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP6.2_1355_10000_0.3503_0.5404_0.9299.png
                gene_name: ENPP6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 82 percent done.
ENSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
ENSA   10000 perm   1 sec   (6892 perm/sec)   p_kst 5.489000e-01   p_cons 2.013000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENSA.2_622_10000_0.5489_0.2013_1.png
                gene_name: ENSA
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ENTPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.956580e-02	ci left: 3.751490e-01	ci right 3.943182e-01	k: 3847	n:10000
Cons ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
KS ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
ENTPD2   10000 perm   2 sec   (6363 perm/sec)   p_kst 2.290000e-01   p_cons 3.775000e-01   p_joint 3.847000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD2.2_1524_10000_0.229_0.3775_0.3847.png
                gene_name: ENTPD2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 85 percent done.
ENTPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
ENTPD4   10000 perm   2 sec   (6047 perm/sec)   p_kst 5.811000e-01   p_cons 8.251000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENTPD4.2_1899_10000_0.5811_0.8251_1.png
                gene_name: ENTPD4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
EOMES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
Cons ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
KS ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
EOMES   10000 perm   2 sec   (5988 perm/sec)   p_kst 1.847000e-01   p_cons 3.046000e-01   p_joint 3.819000e-01

Outputting figure to mutsig2_images.part000000000057/EOMES.2_2085_10000_0.1847_0.3046_0.3819.png
                gene_name: EOMES
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 87 percent done.
EP300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
EP300   10000 perm   2 sec   (4326 perm/sec)   p_kst 4.049000e-01   p_cons 9.730000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.488614e-02	ci left: 9.224545e-02	ci right 1.004723e-01	k: 1926	n:20000
KS ci ratio: 3.324105e-02	ci left: 4.032719e-01	ci right 4.169543e-01	k: 8202	n:20000
EP300   20000 perm   5 sec   (3945 perm/sec)   p_kst 4.101000e-01   p_cons 9.630000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EP300.2_7369_20000_0.4101_0.0963_1.png
                gene_name: EP300
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
EPB42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
KS ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
EPB42   10000 perm   2 sec   (5945 perm/sec)   p_kst 1.589000e-01   p_cons 2.471000e-01   p_joint 2.794000e-01

Outputting figure to mutsig2_images.part000000000057/EPB42.2_2218_10000_0.1589_0.2471_0.2794.png
                gene_name: EPB42
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 90 percent done.
EPCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
Cons ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
KS ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
EPCAM   10000 perm   2 sec   (6565 perm/sec)   p_kst 3.089000e-01   p_cons 4.565000e-01   p_joint 7.933000e-01

Outputting figure to mutsig2_images.part000000000057/EPCAM.2_981_10000_0.3089_0.4565_0.7933.png
                gene_name: EPCAM
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 92 percent done.
EPHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
Cons ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
KS ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
EPHA2   10000 perm   2 sec   (5648 perm/sec)   p_kst 3.650000e-02   p_cons 8.998000e-01   p_joint 9.290000e-02

Joint ci ratio: 3.805389e-02	ci left: 3.400024e-01	ci right 3.532423e-01	k: 6932	n:20000
Cons ci ratio: 8.800833e-03	ci left: 9.043686e-01	ci right 9.124122e-01	k: 18169	n:20000
KS ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
EPHA2   20000 perm   4 sec   (5017 perm/sec)   p_kst 3.750000e-02   p_cons 9.084500e-01   p_joint 3.466000e-01

Joint ci ratio: 2.178245e-02	ci left: 5.134279e-01	ci right 5.247684e-01	k: 15573	n:30000
Cons ci ratio: 7.201983e-03	ci left: 9.047408e-01	ci right 9.113132e-01	k: 27242	n:30000
KS ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
EPHA2   30000 perm   6 sec   (4760 perm/sec)   p_kst 3.770000e-02   p_cons 9.080667e-01   p_joint 5.191000e-01

Joint ci ratio: 1.375211e-02	ci left: 6.654676e-01	ci right 6.747077e-01	k: 26804	n:40000
Cons ci ratio: 6.248744e-03	ci left: 9.048720e-01	ci right 9.105687e-01	k: 36310	n:40000
KS ci ratio: 9.804732e-02	ci left: 3.653794e-02	ci right 4.032944e-02	k: 1536	n:40000
EPHA2   40000 perm   9 sec   (4615 perm/sec)   p_kst 3.840000e-02   p_cons 9.077500e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA2.2_2999_40000_0.0384_0.90775_0.6701.png
                gene_name: EPHA2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.67 

Current progress: 93 percent done.
EPHX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
KS ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
EPHX1   10000 perm   2 sec   (6284 perm/sec)   p_kst 9.296000e-01   p_cons 8.727000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPHX1.2_1400_10000_0.9296_0.8727_1.png
                gene_name: EPHX1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
EPHX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
EPHX4   10000 perm   2 sec   (6553 perm/sec)   p_kst 7.220000e-02   p_cons 5.830000e-02   p_joint 2.191000e-01

Joint ci ratio: 5.162805e-02	ci left: 2.179401e-01	ci right 2.295403e-01	k: 4474	n:20000
Cons ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
KS ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
EPHX4   20000 perm   3 sec   (5810 perm/sec)   p_kst 7.260000e-02   p_cons 5.840000e-02   p_joint 2.237000e-01

Joint ci ratio: 2.551029e-02	ci left: 4.347717e-01	ci right 4.460398e-01	k: 13212	n:30000
Cons ci ratio: 9.049195e-02	ci left: 5.619672e-02	ci right 6.155577e-02	k: 1765	n:30000
KS ci ratio: 8.155625e-02	ci left: 6.857660e-02	ci right 7.444004e-02	k: 2144	n:30000
EPHX4   30000 perm   5 sec   (5531 perm/sec)   p_kst 7.146667e-02   p_cons 5.883333e-02   p_joint 4.404000e-01

Outputting figure to mutsig2_images.part000000000057/EPHX4.2_1117_30000_0.071467_0.058833_0.4404.png
                gene_name: EPHX4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 96 percent done.
EPS8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 9.518041e-03	ci left: 9.397278e-01	ci right 9.488113e-01	k: 9444	n:10000
EPS8L2   10000 perm   2 sec   (5842 perm/sec)   p_kst 9.444000e-01   p_cons 7.788000e-01   p_joint 9.817000e-01

Outputting figure to mutsig2_images.part000000000057/EPS8L2.2_2228_10000_0.9444_0.7788_0.9817.png
                gene_name: EPS8L2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
ERAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
ERAP2   10000 perm   2 sec   (5659 perm/sec)   p_kst 9.895000e-01   p_cons 4.925000e-01   p_joint 8.972000e-01

Outputting figure to mutsig2_images.part000000000057/ERAP2.2_2955_10000_0.9895_0.4925_0.8972.png
                gene_name: ERAP2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 99 percent done.
ERAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
Cons ci ratio: 4.071259e-02	ci left: 4.711640e-01	ci right 4.908471e-01	k: 4810	n:10000
KS ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
ERAS   10000 perm   1 sec   (6718 perm/sec)   p_kst 4.990000e-01   p_cons 4.810000e-01   p_joint 9.631000e-01

Outputting figure to mutsig2_images.part000000000057/ERAS.2_706_10000_0.499_0.481_0.9631.png
                gene_name: ERAS
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000057
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 57 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4421919: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000058> was used as the working directory.
Started at Wed Oct 24 17:42:53 2012
Results reported at Wed Oct 24 20:39:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000058.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000058.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 58  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000058.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10629.65 sec.
    Max Memory :      5544 MB
    Max Swap   :      7947 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
58
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 58
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 58: processing genes 5158 - 5247
Calculating significance of each gene.
Using projection method.
5158	ERC1	1
5159	ERC2	9.324563e-01
5160	ERCC1	1
5161	ERCC2	7.246308e-01
5162	ERCC3	9.669975e-01
5163	ERCC4	8.768413e-01
5164	ERCC5	1
5165	ERCC6	8.891508e-01
5166	ERCC6L	9.359609e-01
5167	ERCC8	1
5168	EREG	3.334381e-02
5169	ERF	1
5170	ERG	6.409051e-01
5171	ERGIC1	6.863167e-01
5172	ERGIC2	1
5173	ERGIC3	3.543533e-01
5174	ERH	1
5175	ERI1	8.383826e-01
5176	ERI2	1
5177	ERI3	6.901848e-01
5178	ERICH1	7.813771e-01
5179	ERLEC1	6.051026e-01
5180	ERLIN1	1
5181	ERLIN2	4.299429e-01
5182	ERMAP	7.214961e-01
5183	ERMN	1
5184	ERMP1	9.518716e-01
5185	ERN1	9.647406e-01
In gene ERN2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 2735    n = 1	mu =   9.71e-07
5186	ERN2	9.524487e-01
5187	ERO1L	5.430602e-01
5188	ERO1LB	1
5189	ERP27	4.850756e-01
5190	ERP29	8.608517e-01
5191	ERP44	4.512638e-01
5192	ERRFI1	5.729050e-01
5193	ERV3	1
5194	ERVFRDE1	6.505263e-01
5195	ESAM	8.946076e-01
5196	ESCO1	6.098510e-01
5197	ESCO2	8.705910e-01
5198	ESD	6.587658e-01
5199	ESF1	8.666317e-01
5200	ESM1	6.305782e-01
5201	ESPL1	1
5202	ESPN	9.563024e-01
5203	ESPNL	5.155928e-01
5204	ESR1	8.982612e-01
5205	ESR2	7.160652e-01
5206	ESRP1	8.568519e-01
5207	ESRP2	9.230571e-01
5208	ESRRA	1
5209	ESRRB	2.232139e-03
5210	ESRRG	5.825276e-01
5211	ESX1	1
5212	ESYT1	9.915091e-01
5213	ESYT2	2.768023e-01
5214	ESYT3	9.723339e-01
5215	ETAA1	4.934098e-01
5216	ETF1	1
5217	ETFA	1
5218	ETFB	1
5219	ETFDH	9.797577e-01
5220	ETHE1	1
5221	ETNK1	8.999133e-01
5222	ETNK2	5.875379e-01
5223	ETS1	8.930540e-01
5224	ETS2	4.971376e-01
5225	ETV1	5.886820e-01
5226	ETV2	1
5227	ETV3	1
5228	ETV3L	1.744742e-01
5229	ETV4	9.506968e-01
5230	ETV5	6.420037e-02
5231	ETV6	2.261745e-01
5232	ETV7	1
5233	EVC	9.930975e-01
5234	EVC2	6.316903e-01
5235	EVI2A	1.272095e-01
5236	EVI2B	4.319009e-01
5237	EVI5	9.740620e-01
5238	EVI5L	9.383180e-01
5239	EVL	8.384864e-01
5240	EVPL	9.939147e-01
5241	EVPLL	2.849778e-01
5242	EVX1	1
5243	EVX2	5.170483e-01
5244	EWSR1	9.689069e-01
5245	EXD1	8.499677e-01
5246	EXD2	1
5247	EXD3	1
Done

Running MutSig 2:
Scatter job 58: processing genes 5158 - 5247
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ERCC5
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
Cons ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
KS ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
ERCC5   10000 perm   2 sec   (4062 perm/sec)   p_kst 3.673000e-01   p_cons 7.981000e-01   p_joint 6.640000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC5.10_3621_10000_0.3673_0.7981_0.664.png
                gene_name: ERCC5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
EVC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
EVC2   10000 perm   2 sec   (5252 perm/sec)   p_kst 5.561000e-01   p_cons 1.869000e-01   p_joint 3.903000e-01

Outputting figure to mutsig2_images.part000000000058/EVC2.11_4015_10000_0.5561_0.1869_0.3903.png
                gene_name: EVC2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 4 percent done.
ESRRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
Cons ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
KS ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
ESRRB   10000 perm   2 sec   (6534 perm/sec)   p_kst 5.475000e-01   p_cons 8.570000e-01   p_joint 7.926000e-01

Outputting figure to mutsig2_images.part000000000058/ESRRB.9_1559_10000_0.5475_0.857_0.7926.png
                gene_name: ESRRB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 5 percent done.
ERC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
Cons ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
KS ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
ERC2   10000 perm   2 sec   (5024 perm/sec)   p_kst 6.732000e-01   p_cons 7.114000e-01   p_joint 9.015000e-01

Outputting figure to mutsig2_images.part000000000058/ERC2.8_2928_10000_0.6732_0.7114_0.9015.png
                gene_name: ERC2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 7 percent done.
ERCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
Cons ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
KS ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
ERCC6   10000 perm   2 sec   (4162 perm/sec)   p_kst 9.207000e-01   p_cons 1.580000e-01   p_joint 3.440000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6.8_4562_10000_0.9207_0.158_0.344.png
                gene_name: ERCC6
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 9 percent done.
ESRRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
Cons ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
KS ci ratio: 1.496550e-01	ci left: 5.937693e-02	ci right 6.907883e-02	k: 641	n:10000
ESRRG   10000 perm   2 sec   (4801 perm/sec)   p_kst 6.410000e-02   p_cons 3.781000e-01   p_joint 1.321000e-01

Joint ci ratio: 6.952379e-02	ci left: 1.323611e-01	ci right 1.419446e-01	k: 2742	n:20000
Cons ci ratio: 3.571992e-02	ci left: 3.690811e-01	ci right 3.825550e-01	k: 7516	n:20000
KS ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
ESRRG   20000 perm   4 sec   (4714 perm/sec)   p_kst 6.820000e-02   p_cons 3.758000e-01   p_joint 1.371000e-01

Joint ci ratio: 6.126802e-02	ci left: 1.163759e-01	ci right 1.237645e-01	k: 3601	n:30000
Cons ci ratio: 2.921805e-02	ci left: 3.694842e-01	ci right 3.804734e-01	k: 11249	n:30000
KS ci ratio: 8.343572e-02	ci left: 6.566681e-02	ci right 7.141709e-02	k: 2055	n:30000
ESRRG   30000 perm   6 sec   (4655 perm/sec)   p_kst 6.850000e-02   p_cons 3.749667e-01   p_joint 1.200333e-01

Outputting figure to mutsig2_images.part000000000058/ESRRG.8_1405_30000_0.0685_0.37497_0.12003.png
                gene_name: ESRRG
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 11 percent done.
ETV5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
ETV5   10000 perm   2 sec   (5616 perm/sec)   p_kst 4.308000e-01   p_cons 3.764000e-01   p_joint 5.572000e-01

Outputting figure to mutsig2_images.part000000000058/ETV5.8_1581_10000_0.4308_0.3764_0.5572.png
                gene_name: ETV5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 13 percent done.
ESCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
KS ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
ESCO1   10000 perm   2 sec   (5139 perm/sec)   p_kst 1.727000e-01   p_cons 6.952000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000058/ESCO1.7_2559_10000_0.1727_0.6952_0.3654.png
                gene_name: ESCO1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 15 percent done.
ESYT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
ESYT2   10000 perm   2 sec   (5231 perm/sec)   p_kst 4.184000e-01   p_cons 2.000000e-04   p_joint 8.700000e-03

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 3.215265e-02	ci left: 4.194323e-01	ci right 4.331891e-01	k: 8526	n:20000
ESYT2   20000 perm   4 sec   (4907 perm/sec)   p_kst 4.263000e-01   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.629809e-02	ci left: 4.198627e-01	ci right 4.310850e-01	k: 12764	n:30000
ESYT2   30000 perm   6 sec   (4845 perm/sec)   p_kst 4.254667e-01   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 2.965237e-01	ci left: 3.705617e-03	ci right 5.017941e-03	k: 173	n:40000
Cons ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
KS ci ratio: 2.319076e-02	ci left: 4.118123e-01	ci right 4.214998e-01	k: 16666	n:40000
ESYT2   40000 perm   8 sec   (4795 perm/sec)   p_kst 4.166500e-01   p_cons 7.500000e-05   p_joint 4.325000e-03

Joint ci ratio: 2.699344e-01	ci left: 3.633436e-03	ci right 4.785298e-03	k: 209	n:50000
Cons ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
KS ci ratio: 2.067324e-02	ci left: 4.139512e-01	ci right 4.226183e-01	k: 20914	n:50000
ESYT2   50000 perm   11 sec   (4737 perm/sec)   p_kst 4.182800e-01   p_cons 6.000000e-05   p_joint 4.180000e-03

Joint ci ratio: 3.620476e-01	ci left: 1.597806e-03	ci right 2.318402e-03	k: 116	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 1.882295e-02	ci left: 4.155970e-01	ci right 4.235108e-01	k: 25173	n:60000
ESYT2   60000 perm   13 sec   (4668 perm/sec)   p_kst 4.195500e-01   p_cons 1.666667e-05   p_joint 1.933333e-03

Joint ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 1.740147e-02	ci left: 4.165968e-01	ci right 4.239241e-01	k: 29418	n:70000
ESYT2   70000 perm   15 sec   (4601 perm/sec)   p_kst 4.202571e-01   p_cons 1.428571e-05   p_joint 1.700000e-03

Joint ci ratio: 3.115484e-01	ci left: 1.667762e-03	ci right 2.294237e-03	k: 157	n:80000
Cons ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
KS ci ratio: 1.629584e-02	ci left: 4.162894e-01	ci right 4.231414e-01	k: 33577	n:80000
ESYT2   80000 perm   18 sec   (4533 perm/sec)   p_kst 4.197125e-01   p_cons 3.750000e-05   p_joint 1.962500e-03

Joint ci ratio: 3.003645e-01	ci left: 1.605548e-03	ci right 2.182871e-03	k: 169	n:90000
Cons ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
KS ci ratio: 1.455851e-02	ci left: 4.428931e-01	ci right 4.493993e-01	k: 40153	n:90000
ESYT2   90000 perm   20 sec   (4460 perm/sec)   p_kst 4.461444e-01   p_cons 3.333333e-05   p_joint 1.877778e-03

Joint ci ratio: 2.871595e-01	ci left: 1.593207e-03	ci right 2.136339e-03	k: 185	n:100000
Cons ci ratio: 1.753025e+00	ci left: 1.089876e-05	ci right 1.024127e-04	k: 4	n:100000
KS ci ratio: 1.381884e-02	ci left: 4.427958e-01	ci right 4.489673e-01	k: 44588	n:100000
ESYT2   100000 perm   23 sec   (4397 perm/sec)   p_kst 4.458800e-01   p_cons 4.000000e-05   p_joint 1.850000e-03

Joint ci ratio: 2.960870e-01	ci left: 1.355657e-03	ci right 1.834874e-03	k: 174	n:110000
Cons ci ratio: 1.600282e+00	ci left: 1.475913e-05	ci right 1.060725e-04	k: 5	n:110000
KS ci ratio: 1.317402e-02	ci left: 4.430049e-01	ci right 4.488888e-01	k: 49054	n:110000
ESYT2   110000 perm   25 sec   (4331 perm/sec)   p_kst 4.459455e-01   p_cons 4.545455e-05   p_joint 1.581818e-03

Joint ci ratio: 3.013248e-01	ci left: 1.196417e-03	ci right 1.628256e-03	k: 168	n:120000
Cons ci ratio: 1.385877e+00	ci left: 2.345334e-05	ci right 1.201852e-04	k: 7	n:120000
KS ci ratio: 1.262456e-02	ci left: 4.426851e-01	ci right 4.483176e-01	k: 53460	n:120000
ESYT2   120000 perm   28 sec   (4268 perm/sec)   p_kst 4.455000e-01   p_cons 5.833333e-05   p_joint 1.400000e-03

Joint ci ratio: 3.097113e-01	ci left: 1.040446e-03	ci right 1.428507e-03	k: 159	n:130000
Cons ci ratio: 1.385881e+00	ci left: 2.164921e-05	ci right 1.109405e-04	k: 7	n:130000
KS ci ratio: 1.213043e-02	ci left: 4.427495e-01	ci right 4.481606e-01	k: 57909	n:130000
ESYT2   130000 perm   31 sec   (4196 perm/sec)   p_kst 4.454538e-01   p_cons 5.384615e-05   p_joint 1.223077e-03

Joint ci ratio: 3.287910e-01	ci left: 8.478349e-04	ci right 1.187664e-03	k: 141	n:140000
Cons ci ratio: 1.385885e+00	ci left: 2.010282e-05	ci right 1.030164e-04	k: 7	n:140000
KS ci ratio: 1.169756e-02	ci left: 4.424943e-01	ci right 4.477080e-01	k: 62314	n:140000
ESYT2   140000 perm   34 sec   (4101 perm/sec)   p_kst 4.451000e-01   p_cons 5.000000e-05   p_joint 1.007143e-03

Joint ci ratio: 3.504682e-01	ci left: 6.876241e-04	ci right 9.855504e-04	k: 124	n:150000
Cons ci ratio: 1.385888e+00	ci left: 1.876262e-05	ci right 9.614879e-05	k: 7	n:150000
KS ci ratio: 1.129757e-02	ci left: 4.427293e-01	ci right 4.477661e-01	k: 66787	n:150000
ESYT2   150000 perm   37 sec   (4001 perm/sec)   p_kst 4.452467e-01   p_cons 4.666667e-05   p_joint 8.266667e-04

Joint ci ratio: 3.423507e-01	ci left: 6.788849e-04	ci right 9.647043e-04	k: 130	n:160000
Cons ci ratio: 1.306626e+00	ci left: 2.158669e-05	ci right 9.851754e-05	k: 8	n:160000
KS ci ratio: 1.094527e-02	ci left: 4.425191e-01	ci right 4.473954e-01	k: 71193	n:160000
ESYT2   160000 perm   41 sec   (3911 perm/sec)   p_kst 4.449562e-01   p_cons 5.000000e-05   p_joint 8.125000e-04

Joint ci ratio: 3.385019e-01	ci left: 6.550875e-04	ci right 9.271095e-04	k: 133	n:170000
Cons ci ratio: 1.306628e+00	ci left: 2.031687e-05	ci right 9.272253e-05	k: 8	n:170000
KS ci ratio: 1.061956e-02	ci left: 4.425416e-01	ci right 4.472721e-01	k: 75634	n:170000
ESYT2   170000 perm   44 sec   (3858 perm/sec)   p_kst 4.449059e-01   p_cons 4.705882e-05   p_joint 7.823529e-04

Joint ci ratio: 3.397806e-01	ci left: 6.136090e-04	ci right 8.695805e-04	k: 132	n:180000
Cons ci ratio: 1.306630e+00	ci left: 1.918815e-05	ci right 8.757138e-05	k: 8	n:180000
KS ci ratio: 1.031642e-02	ci left: 4.427967e-01	ci right 4.473940e-01	k: 80117	n:180000
ESYT2   180000 perm   47 sec   (3813 perm/sec)   p_kst 4.450944e-01   p_cons 4.444444e-05   p_joint 7.333333e-04

Joint ci ratio: 3.288353e-01	ci left: 6.247079e-04	ci right 8.751414e-04	k: 141	n:190000
Cons ci ratio: 1.306632e+00	ci left: 1.817823e-05	ci right 8.296246e-05	k: 8	n:190000
KS ci ratio: 1.004009e-02	ci left: 4.429162e-01	ci right 4.473908e-01	k: 84579	n:190000
ESYT2   190000 perm   50 sec   (3768 perm/sec)   p_kst 4.451526e-01   p_cons 4.210526e-05   p_joint 7.421053e-04

Joint ci ratio: 3.231965e-01	ci left: 6.164263e-04	ci right 8.584240e-04	k: 146	n:200000
Cons ci ratio: 1.306634e+00	ci left: 1.726931e-05	ci right 7.881442e-05	k: 8	n:200000
KS ci ratio: 9.784639e-03	ci left: 4.430352e-01	ci right 4.473964e-01	k: 89043	n:200000
ESYT2   200000 perm   54 sec   (3724 perm/sec)   p_kst 4.452150e-01   p_cons 4.000000e-05   p_joint 7.300000e-04

Joint ci ratio: 3.157660e-01	ci left: 6.177336e-04	ci right 8.535437e-04	k: 153	n:210000
Cons ci ratio: 1.239580e+00	ci left: 1.959720e-05	ci right 8.135464e-05	k: 9	n:210000
KS ci ratio: 9.547283e-03	ci left: 4.431680e-01	ci right 4.474240e-01	k: 93512	n:210000
ESYT2   210000 perm   57 sec   (3680 perm/sec)   p_kst 4.452952e-01   p_cons 4.285714e-05   p_joint 7.285714e-04

Joint ci ratio: 3.157713e-01	ci left: 5.896534e-04	ci right 8.147486e-04	k: 153	n:220000
Cons ci ratio: 1.239582e+00	ci left: 1.870641e-05	ci right 7.765677e-05	k: 9	n:220000
KS ci ratio: 9.323656e-03	ci left: 4.434352e-01	ci right 4.475935e-01	k: 98013	n:220000
ESYT2   220000 perm   61 sec   (3636 perm/sec)   p_kst 4.455136e-01   p_cons 4.090909e-05   p_joint 6.954545e-04

Joint ci ratio: 3.265637e-01	ci left: 5.240387e-04	ci right 7.323592e-04	k: 143	n:230000
Cons ci ratio: 1.181894e+00	ci left: 2.084971e-05	ci right 7.995661e-05	k: 10	n:230000
KS ci ratio: 9.121860e-03	ci left: 4.433108e-01	ci right 4.473775e-01	k: 102429	n:230000
ESYT2   230000 perm   64 sec   (3593 perm/sec)   p_kst 4.453435e-01   p_cons 4.347826e-05   p_joint 6.217391e-04

Joint ci ratio: 3.360413e-01	ci left: 4.716400e-04	ci right 6.657524e-04	k: 135	n:240000
Cons ci ratio: 1.181895e+00	ci left: 1.998096e-05	ci right 7.662514e-05	k: 10	n:240000
KS ci ratio: 8.925468e-03	ci left: 4.435934e-01	ci right 4.475746e-01	k: 106940	n:240000
ESYT2   240000 perm   68 sec   (3549 perm/sec)   p_kst 4.455833e-01   p_cons 4.166667e-05   p_joint 5.625000e-04

Joint ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
Cons ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
KS ci ratio: 8.743924e-03	ci left: 4.437023e-01	ci right 4.476030e-01	k: 111413	n:250000
ESYT2   250000 perm   71 sec   (3505 perm/sec)   p_kst 4.456520e-01   p_cons 4.000000e-05   p_joint 5.320000e-04

Joint ci ratio: 3.577621e-01	ci left: 3.791743e-04	ci right 5.476724e-04	k: 119	n:260000
Cons ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
KS ci ratio: 8.572358e-03	ci left: 4.438420e-01	ci right 4.476669e-01	k: 115896	n:260000
ESYT2   260000 perm   75 sec   (3465 perm/sec)   p_kst 4.457538e-01   p_cons 3.846154e-05   p_joint 4.576923e-04

Joint ci ratio: 3.548193e-01	ci left: 3.718749e-04	ci right 5.354565e-04	k: 121	n:270000
Cons ci ratio: 1.181898e+00	ci left: 1.776084e-05	ci right 6.811137e-05	k: 10	n:270000
KS ci ratio: 8.407233e-03	ci left: 4.441645e-01	ci right 4.479181e-01	k: 120431	n:270000
ESYT2   270000 perm   79 sec   (3424 perm/sec)   p_kst 4.460407e-01   p_cons 3.703704e-05   p_joint 4.481481e-04

Joint ci ratio: 3.533762e-01	ci left: 3.618471e-04	ci right 5.202215e-04	k: 122	n:280000
Cons ci ratio: 1.131580e+00	ci left: 1.961144e-05	ci right 7.029190e-05	k: 11	n:280000
KS ci ratio: 8.260778e-03	ci left: 4.438970e-01	ci right 4.475827e-01	k: 124807	n:280000
ESYT2   280000 perm   83 sec   (3383 perm/sec)   p_kst 4.457393e-01   p_cons 3.928571e-05   p_joint 4.357143e-04

Joint ci ratio: 3.450594e-01	ci left: 3.682450e-04	ci right 5.247796e-04	k: 128	n:290000
Cons ci ratio: 1.047637e+00	ci left: 2.386901e-05	ci right 7.665532e-05	k: 13	n:290000
KS ci ratio: 8.121149e-03	ci left: 4.436830e-01	ci right 4.473043e-01	k: 129193	n:290000
ESYT2   290000 perm   87 sec   (3344 perm/sec)   p_kst 4.454931e-01   p_cons 4.482759e-05   p_joint 4.413793e-04

Joint ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
Cons ci ratio: 1.047638e+00	ci left: 2.307337e-05	ci right 7.410018e-05	k: 13	n:300000
KS ci ratio: 7.978240e-03	ci left: 4.441102e-01	ci right 4.476709e-01	k: 133767	n:300000
ESYT2   300000 perm   91 sec   (3304 perm/sec)   p_kst 4.458900e-01   p_cons 4.333333e-05   p_joint 4.500000e-04

Joint ci ratio: 3.398336e-01	ci left: 3.562806e-04	ci right 5.049321e-04	k: 132	n:310000
Cons ci ratio: 1.047639e+00	ci left: 2.232906e-05	ci right 7.170989e-05	k: 13	n:310000
KS ci ratio: 7.847168e-03	ci left: 4.442233e-01	ci right 4.477261e-01	k: 138252	n:310000
ESYT2   310000 perm   95 sec   (3265 perm/sec)   p_kst 4.459742e-01   p_cons 4.193548e-05   p_joint 4.258065e-04

Joint ci ratio: 3.654756e-01	ci left: 2.938710e-04	ci right 4.279497e-04	k: 114	n:320000
Cons ci ratio: 1.047640e+00	ci left: 2.163127e-05	ci right 6.946899e-05	k: 13	n:320000
KS ci ratio: 7.725135e-03	ci left: 4.441517e-01	ci right 4.475992e-01	k: 142680	n:320000
ESYT2   320000 perm   99 sec   (3227 perm/sec)   p_kst 4.458750e-01   p_cons 4.062500e-05   p_joint 3.562500e-04

Joint ci ratio: 3.654776e-01	ci left: 2.849656e-04	ci right 4.149820e-04	k: 114	n:330000
Cons ci ratio: 1.047640e+00	ci left: 2.097577e-05	ci right 6.736389e-05	k: 13	n:330000
KS ci ratio: 7.606243e-03	ci left: 4.442394e-01	ci right 4.476343e-01	k: 147159	n:330000
ESYT2   330000 perm   103 sec   (3190 perm/sec)   p_kst 4.459364e-01   p_cons 3.939394e-05   p_joint 3.454545e-04

Joint ci ratio: 3.562997e-01	ci left: 2.926317e-04	ci right 4.220166e-04	k: 120	n:340000
Cons ci ratio: 1.047641e+00	ci left: 2.035884e-05	ci right 6.538263e-05	k: 13	n:340000
KS ci ratio: 7.495621e-03	ci left: 4.441282e-01	ci right 4.474727e-01	k: 151572	n:340000
ESYT2   340000 perm   108 sec   (3151 perm/sec)   p_kst 4.458000e-01   p_cons 3.823529e-05   p_joint 3.529412e-04

Joint ci ratio: 3.519635e-01	ci left: 2.920798e-04	ci right 4.192898e-04	k: 123	n:350000
Cons ci ratio: 1.047642e+00	ci left: 1.977715e-05	ci right 6.351458e-05	k: 13	n:350000
KS ci ratio: 7.382813e-03	ci left: 4.444836e-01	ci right 4.477801e-01	k: 156146	n:350000
ESYT2   350000 perm   112 sec   (3116 perm/sec)   p_kst 4.461314e-01   p_cons 3.714286e-05   p_joint 3.514286e-04

Joint ci ratio: 3.623447e-01	ci left: 2.662655e-04	ci right 3.864624e-04	k: 116	n:360000
Cons ci ratio: 1.047642e+00	ci left: 1.922778e-05	ci right 6.175031e-05	k: 13	n:360000
KS ci ratio: 7.281407e-03	ci left: 4.443809e-01	ci right 4.476311e-01	k: 160562	n:360000
ESYT2   360000 perm   117 sec   (3083 perm/sec)   p_kst 4.460056e-01   p_cons 3.611111e-05   p_joint 3.222222e-04

Joint ci ratio: 3.654846e-01	ci left: 2.541577e-04	ci right 3.701205e-04	k: 114	n:370000
Cons ci ratio: 1.047643e+00	ci left: 1.870811e-05	ci right 6.008140e-05	k: 13	n:370000
KS ci ratio: 7.181907e-03	ci left: 4.444325e-01	ci right 4.476386e-01	k: 165033	n:370000
ESYT2   370000 perm   121 sec   (3050 perm/sec)   p_kst 4.460351e-01   p_cons 3.513514e-05   p_joint 3.081081e-04

Joint ci ratio: 3.623479e-01	ci left: 2.522512e-04	ci right 3.661229e-04	k: 116	n:380000
Cons ci ratio: 1.047643e+00	ci left: 1.821579e-05	ci right 5.850033e-05	k: 13	n:380000
KS ci ratio: 7.088868e-03	ci left: 4.443082e-01	ci right 4.474716e-01	k: 169438	n:380000
ESYT2   380000 perm   126 sec   (3018 perm/sec)   p_kst 4.458895e-01   p_cons 3.421053e-05   p_joint 3.052632e-04

Joint ci ratio: 3.592905e-01	ci left: 2.504465e-04	ci right 3.623264e-04	k: 118	n:390000
Cons ci ratio: 1.047644e+00	ci left: 1.774871e-05	ci right 5.700034e-05	k: 13	n:390000
KS ci ratio: 6.995758e-03	ci left: 4.444442e-01	ci right 4.475669e-01	k: 173942	n:390000
ESYT2   390000 perm   131 sec   (2983 perm/sec)   p_kst 4.460051e-01   p_cons 3.333333e-05   p_joint 3.025641e-04

Joint ci ratio: 3.592919e-01	ci left: 2.441852e-04	ci right 3.532685e-04	k: 118	n:400000
Cons ci ratio: 1.012119e+00	ci left: 1.913495e-05	ci right 5.872336e-05	k: 14	n:400000
KS ci ratio: 6.911886e-03	ci left: 4.441688e-01	ci right 4.472520e-01	k: 178284	n:400000
ESYT2   400000 perm   135 sec   (2953 perm/sec)   p_kst 4.457100e-01   p_cons 3.500000e-05   p_joint 2.950000e-04

Joint ci ratio: 3.534010e-01	ci left: 2.471123e-04	ci right 3.552780e-04	k: 122	n:410000
Cons ci ratio: 9.507188e-01	ci left: 2.230597e-05	ci right 6.337239e-05	k: 16	n:410000
KS ci ratio: 6.827988e-03	ci left: 4.441217e-01	ci right 4.471669e-01	k: 182714	n:410000
ESYT2   410000 perm   140 sec   (2922 perm/sec)   p_kst 4.456439e-01   p_cons 3.902439e-05   p_joint 2.975610e-04

Joint ci ratio: 3.505629e-01	ci left: 2.455696e-04	ci right 3.520003e-04	k: 124	n:420000
Cons ci ratio: 9.507193e-01	ci left: 2.177487e-05	ci right 6.186354e-05	k: 16	n:420000
KS ci ratio: 6.741938e-03	ci left: 4.444530e-01	ci right 4.474620e-01	k: 187302	n:420000
ESYT2   420000 perm   145 sec   (2893 perm/sec)   p_kst 4.459571e-01   p_cons 3.809524e-05   p_joint 2.952381e-04

Joint ci ratio: 3.491698e-01	ci left: 2.419798e-04	ci right 3.463435e-04	k: 125	n:430000
Cons ci ratio: 9.507198e-01	ci left: 2.126848e-05	ci right 6.042487e-05	k: 16	n:430000
KS ci ratio: 6.664167e-03	ci left: 4.443903e-01	ci right 4.473639e-01	k: 191727	n:430000
ESYT2   430000 perm   150 sec   (2863 perm/sec)   p_kst 4.458767e-01   p_cons 3.720930e-05   p_joint 2.906977e-04

Joint ci ratio: 3.437556e-01	ci left: 2.447803e-04	ci right 3.483508e-04	k: 129	n:440000
Cons ci ratio: 9.239329e-01	ci left: 2.250726e-05	ci right 6.185984e-05	k: 17	n:440000
KS ci ratio: 6.587663e-03	ci left: 4.444328e-01	ci right 4.473725e-01	k: 196197	n:440000
ESYT2   440000 perm   155 sec   (2835 perm/sec)   p_kst 4.459023e-01   p_cons 3.863636e-05   p_joint 2.931818e-04

Joint ci ratio: 3.424418e-01	ci left: 2.413714e-04	ci right 3.430228e-04	k: 130	n:450000
Cons ci ratio: 8.765182e-01	ci left: 2.542072e-05	ci right 6.593445e-05	k: 19	n:450000
KS ci ratio: 6.513735e-03	ci left: 4.444736e-01	ci right 4.473804e-01	k: 200667	n:450000
ESYT2   450000 perm   160 sec   (2808 perm/sec)   p_kst 4.459267e-01   p_cons 4.222222e-05   p_joint 2.888889e-04

Joint ci ratio: 3.437578e-01	ci left: 2.341374e-04	ci right 3.332055e-04	k: 129	n:460000
Cons ci ratio: 8.553937e-01	ci left: 2.655785e-05	ci right 6.714785e-05	k: 20	n:460000
KS ci ratio: 6.442382e-03	ci left: 4.445020e-01	ci right 4.473770e-01	k: 205132	n:460000
ESYT2   460000 perm   165 sec   (2780 perm/sec)   p_kst 4.459391e-01   p_cons 4.347826e-05   p_joint 2.804348e-04

Joint ci ratio: 3.398587e-01	ci left: 2.349909e-04	ci right 3.330448e-04	k: 132	n:470000
Cons ci ratio: 8.553941e-01	ci left: 2.599278e-05	ci right 6.571919e-05	k: 20	n:470000
KS ci ratio: 6.374779e-03	ci left: 4.444165e-01	ci right 4.472607e-01	k: 209544	n:470000
ESYT2   470000 perm   171 sec   (2752 perm/sec)   p_kst 4.458383e-01   p_cons 4.255319e-05   p_joint 2.808511e-04

Joint ci ratio: 3.373321e-01	ci left: 2.339077e-04	ci right 3.306261e-04	k: 134	n:480000
Cons ci ratio: 8.553945e-01	ci left: 2.545126e-05	ci right 6.435006e-05	k: 20	n:480000
KS ci ratio: 6.308302e-03	ci left: 4.444098e-01	ci right 4.472242e-01	k: 213992	n:480000
ESYT2   480000 perm   176 sec   (2725 perm/sec)   p_kst 4.458167e-01   p_cons 4.166667e-05   p_joint 2.791667e-04

Joint ci ratio: 3.348610e-01	ci left: 2.328712e-04	ci right 3.283035e-04	k: 136	n:490000
Cons ci ratio: 8.553949e-01	ci left: 2.493185e-05	ci right 6.303681e-05	k: 20	n:490000
KS ci ratio: 6.242728e-03	ci left: 4.444933e-01	ci right 4.472788e-01	k: 218484	n:490000
ESYT2   490000 perm   182 sec   (2698 perm/sec)   p_kst 4.458857e-01   p_cons 4.081633e-05   p_joint 2.775510e-04

Joint ci ratio: 3.289120e-01	ci left: 2.373808e-04	ci right 3.325674e-04	k: 141	n:500000
Cons ci ratio: 8.173569e-01	ci left: 2.757476e-05	ci right 6.661578e-05	k: 22	n:500000
KS ci ratio: 6.178331e-03	ci left: 4.446395e-01	ci right 4.473971e-01	k: 223009	n:500000
ESYT2   500000 perm   187 sec   (2672 perm/sec)   p_kst 4.460180e-01   p_cons 4.400000e-05   p_joint 2.820000e-04

Joint ci ratio: 3.266202e-01	ci left: 2.363251e-04	ci right 3.302897e-04	k: 143	n:510000
Cons ci ratio: 8.173573e-01	ci left: 2.703408e-05	ci right 6.530960e-05	k: 22	n:510000
KS ci ratio: 6.115717e-03	ci left: 4.447939e-01	ci right 4.475244e-01	k: 227541	n:510000
ESYT2   510000 perm   193 sec   (2647 perm/sec)   p_kst 4.461588e-01   p_cons 4.313725e-05   p_joint 2.803922e-04

Joint ci ratio: 3.221758e-01	ci left: 2.388465e-04	ci right 3.322544e-04	k: 147	n:520000
Cons ci ratio: 8.173576e-01	ci left: 2.651419e-05	ci right 6.405366e-05	k: 22	n:520000
KS ci ratio: 6.055981e-03	ci left: 4.448598e-01	ci right 4.475639e-01	k: 232030	n:520000
ESYT2   520000 perm   198 sec   (2622 perm/sec)   p_kst 4.462115e-01   p_cons 4.230769e-05   p_joint 2.826923e-04

Joint ci ratio: 3.210935e-01	ci left: 2.360743e-04	ci right 3.280241e-04	k: 148	n:530000
Cons ci ratio: 8.173580e-01	ci left: 2.601392e-05	ci right 6.284511e-05	k: 22	n:530000
KS ci ratio: 5.996153e-03	ci left: 4.450723e-01	ci right 4.477509e-01	k: 236598	n:530000
ESYT2   530000 perm   204 sec   (2598 perm/sec)   p_kst 4.464113e-01   p_cons 4.150943e-05   p_joint 2.792453e-04

Joint ci ratio: 3.189602e-01	ci left: 2.351088e-04	ci right 3.259499e-04	k: 150	n:540000
Cons ci ratio: 8.173583e-01	ci left: 2.553218e-05	ci right 6.168133e-05	k: 22	n:540000
KS ci ratio: 5.940844e-03	ci left: 4.450457e-01	ci right 4.476993e-01	k: 241041	n:540000
ESYT2   540000 perm   210 sec   (2574 perm/sec)   p_kst 4.463722e-01   p_cons 4.074074e-05   p_joint 2.777778e-04

Joint ci ratio: 3.158381e-01	ci left: 2.358542e-04	ci right 3.259111e-04	k: 153	n:550000
Cons ci ratio: 8.173587e-01	ci left: 2.506795e-05	ci right 6.055986e-05	k: 22	n:550000
KS ci ratio: 5.888836e-03	ci left: 4.448693e-01	ci right 4.474986e-01	k: 245401	n:550000
ESYT2   550000 perm   216 sec   (2550 perm/sec)   p_kst 4.461836e-01   p_cons 4.000000e-05   p_joint 2.781818e-04

Joint ci ratio: 3.200235e-01	ci left: 2.250693e-04	ci right 3.123807e-04	k: 149	n:560000
Cons ci ratio: 8.173590e-01	ci left: 2.462031e-05	ci right 5.947844e-05	k: 22	n:560000
KS ci ratio: 5.834794e-03	ci left: 4.449849e-01	ci right 4.475906e-01	k: 249921	n:560000
ESYT2   560000 perm   222 sec   (2526 perm/sec)   p_kst 4.462875e-01   p_cons 3.928571e-05   p_joint 2.660714e-04

Joint ci ratio: 3.200243e-01	ci left: 2.211207e-04	ci right 3.069004e-04	k: 149	n:570000
Cons ci ratio: 8.173593e-01	ci left: 2.418837e-05	ci right 5.843497e-05	k: 22	n:570000
KS ci ratio: 5.782931e-03	ci left: 4.450352e-01	ci right 4.476180e-01	k: 254406	n:570000
ESYT2   570000 perm   228 sec   (2503 perm/sec)   p_kst 4.463263e-01   p_cons 3.859649e-05   p_joint 2.614035e-04

Joint ci ratio: 3.168711e-01	ci left: 2.220673e-04	ci right 3.071935e-04	k: 152	n:580000
Cons ci ratio: 8.173596e-01	ci left: 2.377133e-05	ci right 5.742748e-05	k: 22	n:580000
KS ci ratio: 5.731268e-03	ci left: 4.451838e-01	ci right 4.477443e-01	k: 258949	n:580000
ESYT2   580000 perm   234 sec   (2480 perm/sec)   p_kst 4.464638e-01   p_cons 3.793103e-05   p_joint 2.620690e-04

Joint ci ratio: 3.300838e-01	ci left: 1.996147e-04	ci right 2.800033e-04	k: 140	n:590000
Cons ci ratio: 8.173599e-01	ci left: 2.336842e-05	ci right 5.645414e-05	k: 22	n:590000
KS ci ratio: 5.681899e-03	ci left: 4.452462e-01	ci right 4.477849e-01	k: 263444	n:590000
ESYT2   590000 perm   240 sec   (2458 perm/sec)   p_kst 4.465153e-01   p_cons 3.728814e-05   p_joint 2.372881e-04

Joint ci ratio: 3.312615e-01	ci left: 1.947594e-04	ci right 2.735322e-04	k: 139	n:600000
Cons ci ratio: 8.173602e-01	ci left: 2.297894e-05	ci right 5.551325e-05	k: 22	n:600000
KS ci ratio: 5.633613e-03	ci left: 4.453215e-01	ci right 4.478390e-01	k: 267948	n:600000
ESYT2   600000 perm   246 sec   (2435 perm/sec)   p_kst 4.465800e-01   p_cons 3.666667e-05   p_joint 2.316667e-04

Joint ci ratio: 3.300851e-01	ci left: 1.930699e-04	ci right 2.708231e-04	k: 140	n:610000
Cons ci ratio: 8.173604e-01	ci left: 2.260224e-05	ci right 5.460321e-05	k: 22	n:610000
KS ci ratio: 5.588242e-03	ci left: 4.452437e-01	ci right 4.477404e-01	k: 272360	n:610000
ESYT2   610000 perm   253 sec   (2413 perm/sec)   p_kst 4.464918e-01   p_cons 3.606557e-05   p_joint 2.295082e-04

Joint ci ratio: 3.289212e-01	ci left: 1.914353e-04	ci right 2.682009e-04	k: 141	n:620000
Cons ci ratio: 8.001505e-01	ci left: 2.351631e-05	ci right 5.566286e-05	k: 23	n:620000
KS ci ratio: 5.542828e-03	ci left: 4.452685e-01	ci right 4.477449e-01	k: 276834	n:620000
ESYT2   620000 perm   259 sec   (2392 perm/sec)   p_kst 4.465065e-01   p_cons 3.709677e-05   p_joint 2.274194e-04

Joint ci ratio: 3.277694e-01	ci left: 1.898531e-04	ci right 2.656614e-04	k: 142	n:630000
Cons ci ratio: 7.839838e-01	ci left: 2.440849e-05	ci right 5.668217e-05	k: 24	n:630000
KS ci ratio: 5.498610e-03	ci left: 4.452830e-01	ci right 4.477397e-01	k: 281302	n:630000
ESYT2   630000 perm   266 sec   (2371 perm/sec)   p_kst 4.465111e-01   p_cons 3.809524e-05   p_joint 2.253968e-04

Joint ci ratio: 3.300869e-01	ci left: 1.840196e-04	ci right 2.581285e-04	k: 140	n:640000
Cons ci ratio: 7.687590e-01	ci left: 2.527934e-05	ci right 5.766342e-05	k: 25	n:640000
KS ci ratio: 5.458142e-03	ci left: 4.450519e-01	ci right 4.474892e-01	k: 285613	n:640000
ESYT2   640000 perm   272 sec   (2351 perm/sec)   p_kst 4.462703e-01   p_cons 3.906250e-05   p_joint 2.187500e-04

Joint ci ratio: 3.255017e-01	ci left: 1.868361e-04	ci right 2.608157e-04	k: 144	n:650000
Cons ci ratio: 7.543881e-01	ci left: 2.612949e-05	ci right 5.860872e-05	k: 26	n:650000
KS ci ratio: 5.416056e-03	ci left: 4.450556e-01	ci right 4.474741e-01	k: 290072	n:650000
ESYT2   650000 perm   279 sec   (2331 perm/sec)   p_kst 4.462646e-01   p_cons 4.000000e-05   p_joint 2.215385e-04

Joint ci ratio: 3.221856e-01	ci left: 1.881812e-04	ci right 2.617776e-04	k: 147	n:660000
Cons ci ratio: 7.543883e-01	ci left: 2.573359e-05	ci right 5.772072e-05	k: 26	n:660000
KS ci ratio: 5.373858e-03	ci left: 4.451577e-01	ci right 4.475579e-01	k: 294596	n:660000
ESYT2   660000 perm   286 sec   (2311 perm/sec)   p_kst 4.463576e-01   p_cons 3.939394e-05   p_joint 2.227273e-04

Joint ci ratio: 3.200306e-01	ci left: 1.881170e-04	ci right 2.610953e-04	k: 149	n:670000
Cons ci ratio: 7.407943e-01	ci left: 2.655713e-05	ci right 5.863168e-05	k: 27	n:670000
KS ci ratio: 5.334612e-03	ci left: 4.450734e-01	ci right 4.474555e-01	k: 298997	n:670000
ESYT2   670000 perm   292 sec   (2292 perm/sec)   p_kst 4.462642e-01   p_cons 4.029851e-05   p_joint 2.223881e-04

Joint ci ratio: 3.221867e-01	ci left: 1.826464e-04	ci right 2.540784e-04	k: 147	n:680000
Cons ci ratio: 7.407946e-01	ci left: 2.616658e-05	ci right 5.776945e-05	k: 27	n:680000
KS ci ratio: 5.295741e-03	ci left: 4.450356e-01	ci right 4.474001e-01	k: 303428	n:680000
ESYT2   680000 perm   299 sec   (2273 perm/sec)   p_kst 4.462176e-01   p_cons 3.970588e-05   p_joint 2.161765e-04

Joint ci ratio: 3.277727e-01	ci left: 1.733439e-04	ci right 2.425609e-04	k: 142	n:690000
Cons ci ratio: 7.407948e-01	ci left: 2.578736e-05	ci right 5.693222e-05	k: 27	n:690000
KS ci ratio: 5.257552e-03	ci left: 4.450136e-01	ci right 4.473608e-01	k: 307869	n:690000
ESYT2   690000 perm   306 sec   (2254 perm/sec)   p_kst 4.461870e-01   p_cons 3.913043e-05   p_joint 2.057971e-04

Joint ci ratio: 3.232820e-01	ci left: 1.761150e-04	ci right 2.452752e-04	k: 146	n:700000
Cons ci ratio: 7.156750e-01	ci left: 2.774553e-05	ci right 5.949780e-05	k: 29	n:700000
KS ci ratio: 5.218730e-03	ci left: 4.451293e-01	ci right 4.474597e-01	k: 312406	n:700000
ESYT2   700000 perm   313 sec   (2235 perm/sec)   p_kst 4.462943e-01   p_cons 4.142857e-05   p_joint 2.085714e-04

Joint ci ratio: 3.255048e-01	ci left: 1.710469e-04	ci right 2.387753e-04	k: 144	n:710000
Cons ci ratio: 7.156752e-01	ci left: 2.735475e-05	ci right 5.865981e-05	k: 29	n:710000
KS ci ratio: 5.181434e-03	ci left: 4.451770e-01	ci right 4.474910e-01	k: 316897	n:710000
ESYT2   710000 perm   320 sec   (2217 perm/sec)   p_kst 4.463338e-01   p_cons 4.084507e-05   p_joint 2.028169e-04

Joint ci ratio: 3.336603e-01	ci left: 1.597531e-04	ci right 2.249356e-04	k: 137	n:720000
Cons ci ratio: 7.839858e-01	ci left: 2.135741e-05	ci right 4.959695e-05	k: 24	n:720000
KS ci ratio: 5.146126e-03	ci left: 4.451082e-01	ci right 4.474061e-01	k: 321305	n:720000
ESYT2   720000 perm   327 sec   (2199 perm/sec)   p_kst 4.462569e-01   p_cons 3.333333e-05   p_joint 1.902778e-04

Joint ci ratio: 3.324582e-01	ci left: 1.588200e-04	ci right 2.233383e-04	k: 138	n:730000
Cons ci ratio: 7.839860e-01	ci left: 2.106484e-05	ci right 4.891755e-05	k: 24	n:730000
KS ci ratio: 5.111899e-03	ci left: 4.450058e-01	ci right 4.472878e-01	k: 325687	n:730000
ESYT2   730000 perm   335 sec   (2182 perm/sec)   p_kst 4.461466e-01   p_cons 3.287671e-05   p_joint 1.890411e-04

Joint ci ratio: 3.300919e-01	ci left: 1.591517e-04	ci right 2.232469e-04	k: 140	n:740000
Cons ci ratio: 7.543901e-01	ci left: 2.295156e-05	ci right 5.148069e-05	k: 26	n:740000
KS ci ratio: 5.078095e-03	ci left: 4.449305e-01	ci right 4.471970e-01	k: 330087	n:740000
ESYT2   740000 perm   342 sec   (2165 perm/sec)   p_kst 4.460635e-01   p_cons 3.513514e-05   p_joint 1.891892e-04

Joint ci ratio: 3.289277e-01	ci left: 1.582527e-04	ci right 2.217135e-04	k: 141	n:750000
Cons ci ratio: 7.543903e-01	ci left: 2.264554e-05	ci right 5.079429e-05	k: 26	n:750000
KS ci ratio: 5.043483e-03	ci left: 4.450012e-01	ci right 4.472525e-01	k: 334595	n:750000
ESYT2   750000 perm   349 sec   (2148 perm/sec)   p_kst 4.461267e-01   p_cons 3.466667e-05   p_joint 1.880000e-04

Joint ci ratio: 3.300927e-01	ci left: 1.549634e-04	ci right 2.173720e-04	k: 140	n:760000
Cons ci ratio: 7.543905e-01	ci left: 2.234757e-05	ci right 5.012595e-05	k: 26	n:760000
KS ci ratio: 5.009196e-03	ci left: 4.451070e-01	ci right 4.473435e-01	k: 339131	n:760000
ESYT2   760000 perm   356 sec   (2132 perm/sec)   p_kst 4.462250e-01   p_cons 3.421053e-05   p_joint 1.842105e-04

Joint ci ratio: 3.312701e-01	ci left: 1.517600e-04	ci right 2.131430e-04	k: 139	n:770000
Cons ci ratio: 7.407964e-01	ci left: 2.310814e-05	ci right 5.101723e-05	k: 27	n:770000
KS ci ratio: 4.976958e-03	ci left: 4.450750e-01	ci right 4.472969e-01	k: 343563	n:770000
ESYT2   770000 perm   364 sec   (2117 perm/sec)   p_kst 4.461857e-01   p_cons 3.506494e-05   p_joint 1.805195e-04

Joint ci ratio: 3.398779e-01	ci left: 1.415959e-04	ci right 2.006829e-04	k: 132	n:780000
Cons ci ratio: 7.156766e-01	ci left: 2.489982e-05	ci right 5.339551e-05	k: 29	n:780000
KS ci ratio: 4.944937e-03	ci left: 4.450836e-01	ci right 4.472912e-01	k: 348026	n:780000
ESYT2   780000 perm   371 sec   (2102 perm/sec)   p_kst 4.461872e-01   p_cons 3.717949e-05   p_joint 1.692308e-04

Joint ci ratio: 3.398783e-01	ci left: 1.398035e-04	ci right 1.981427e-04	k: 132	n:790000
Cons ci ratio: 7.156768e-01	ci left: 2.458463e-05	ci right 5.271963e-05	k: 29	n:790000
KS ci ratio: 4.913765e-03	ci left: 4.450680e-01	ci right 4.472615e-01	k: 352470	n:790000
ESYT2   790000 perm   379 sec   (2086 perm/sec)   p_kst 4.461646e-01   p_cons 3.670886e-05   p_joint 1.670886e-04

Joint ci ratio: 3.386078e-01	ci left: 1.391994e-04	ci right 1.970220e-04	k: 133	n:800000
Cons ci ratio: 7.156769e-01	ci left: 2.427732e-05	ci right 5.206064e-05	k: 29	n:800000
KS ci ratio: 4.883398e-03	ci left: 4.450303e-01	ci right 4.472101e-01	k: 356896	n:800000
ESYT2   800000 perm   386 sec   (2071 perm/sec)   p_kst 4.461200e-01   p_cons 3.625000e-05   p_joint 1.662500e-04

Joint ci ratio: 3.361088e-01	ci left: 1.397409e-04	ci right 1.972672e-04	k: 135	n:810000
Cons ci ratio: 7.156771e-01	ci left: 2.397760e-05	ci right 5.141792e-05	k: 29	n:810000
KS ci ratio: 4.853054e-03	ci left: 4.450479e-01	ci right 4.472142e-01	k: 361366	n:810000
ESYT2   810000 perm   394 sec   (2056 perm/sec)   p_kst 4.461309e-01   p_cons 3.580247e-05   p_joint 1.666667e-04

Joint ci ratio: 3.348800e-01	ci left: 1.391536e-04	ci right 1.961833e-04	k: 136	n:820000
Cons ci ratio: 6.929507e-01	ci left: 2.568672e-05	ci right 5.366058e-05	k: 31	n:820000
KS ci ratio: 4.821899e-03	ci left: 4.452053e-01	ci right 4.473585e-01	k: 365951	n:820000
ESYT2   820000 perm   402 sec   (2041 perm/sec)   p_kst 4.462817e-01   p_cons 3.780488e-05   p_joint 1.658537e-04

Joint ci ratio: 3.336646e-01	ci left: 1.385807e-04	ci right 1.951253e-04	k: 137	n:830000
Cons ci ratio: 6.929509e-01	ci left: 2.537724e-05	ci right 5.301407e-05	k: 31	n:830000
KS ci ratio: 4.792937e-03	ci left: 4.451940e-01	ci right 4.473341e-01	k: 370399	n:830000
ESYT2   830000 perm   410 sec   (2026 perm/sec)   p_kst 4.462639e-01   p_cons 3.734940e-05   p_joint 1.650602e-04

Joint ci ratio: 3.336649e-01	ci left: 1.369309e-04	ci right 1.928024e-04	k: 137	n:840000
Cons ci ratio: 6.929510e-01	ci left: 2.507513e-05	ci right 5.238296e-05	k: 31	n:840000
KS ci ratio: 4.764674e-03	ci left: 4.451639e-01	ci right 4.472912e-01	k: 374831	n:840000
ESYT2   840000 perm   418 sec   (2010 perm/sec)   p_kst 4.462274e-01   p_cons 3.690476e-05   p_joint 1.630952e-04

Joint ci ratio: 3.324627e-01	ci left: 1.363981e-04	ci right 1.918086e-04	k: 138	n:850000
Cons ci ratio: 6.929512e-01	ci left: 2.478013e-05	ci right 5.176669e-05	k: 31	n:850000
KS ci ratio: 4.736138e-03	ci left: 4.452146e-01	ci right 4.473293e-01	k: 379331	n:850000
ESYT2   850000 perm   426 sec   (1993 perm/sec)   p_kst 4.462718e-01   p_cons 3.647059e-05   p_joint 1.623529e-04

Joint ci ratio: 3.255106e-01	ci left: 1.412127e-04	ci right 1.971291e-04	k: 144	n:860000
Cons ci ratio: 6.929514e-01	ci left: 2.449198e-05	ci right 5.116476e-05	k: 31	n:860000
KS ci ratio: 4.707910e-03	ci left: 4.452850e-01	ci right 4.473874e-01	k: 383849	n:860000
ESYT2   860000 perm   435 sec   (1978 perm/sec)   p_kst 4.463360e-01   p_cons 3.604651e-05   p_joint 1.674419e-04

Joint ci ratio: 3.232886e-01	ci left: 1.417013e-04	ci right 1.973486e-04	k: 146	n:870000
Cons ci ratio: 6.929515e-01	ci left: 2.421046e-05	ci right 5.057666e-05	k: 31	n:870000
KS ci ratio: 4.680691e-03	ci left: 4.452998e-01	ci right 4.473902e-01	k: 388320	n:870000
ESYT2   870000 perm   443 sec   (1965 perm/sec)   p_kst 4.463448e-01   p_cons 3.563218e-05   p_joint 1.678161e-04

Joint ci ratio: 3.221947e-01	ci left: 1.411353e-04	ci right 1.963341e-04	k: 147	n:880000
Cons ci ratio: 6.823712e-01	ci left: 2.487283e-05	ci right 5.133422e-05	k: 32	n:880000
KS ci ratio: 4.654454e-03	ci left: 4.452599e-01	ci right 4.473382e-01	k: 392743	n:880000
ESYT2   880000 perm   451 sec   (1951 perm/sec)   p_kst 4.462989e-01   p_cons 3.636364e-05   p_joint 1.670455e-04

Joint ci ratio: 3.232893e-01	ci left: 1.385169e-04	ci right 1.929139e-04	k: 146	n:890000
Cons ci ratio: 6.823714e-01	ci left: 2.459336e-05	ci right 5.075744e-05	k: 32	n:890000
KS ci ratio: 4.628684e-03	ci left: 4.452174e-01	ci right 4.472841e-01	k: 397163	n:890000
ESYT2   890000 perm   459 sec   (1938 perm/sec)   p_kst 4.462506e-01   p_cons 3.595506e-05   p_joint 1.640449e-04

Joint ci ratio: 3.221953e-01	ci left: 1.379990e-04	ci right 1.919712e-04	k: 147	n:900000
Cons ci ratio: 6.823715e-01	ci left: 2.432010e-05	ci right 5.019347e-05	k: 32	n:900000
KS ci ratio: 4.602612e-03	ci left: 4.452537e-01	ci right 4.473089e-01	k: 401653	n:900000
ESYT2   900000 perm   468 sec   (1925 perm/sec)   p_kst 4.462811e-01   p_cons 3.555556e-05   p_joint 1.633333e-04

Joint ci ratio: 3.211124e-01	ci left: 1.374927e-04	ci right 1.910490e-04	k: 148	n:910000
Cons ci ratio: 6.823717e-01	ci left: 2.405284e-05	ci right 4.964190e-05	k: 32	n:910000
KS ci ratio: 4.577638e-03	ci left: 4.452178e-01	ci right 4.472616e-01	k: 406078	n:910000
ESYT2   910000 perm   476 sec   (1912 perm/sec)   p_kst 4.462396e-01   p_cons 3.516484e-05   p_joint 1.626374e-04

Joint ci ratio: 3.200404e-01	ci left: 1.369977e-04	ci right 1.901465e-04	k: 149	n:920000
Cons ci ratio: 6.823718e-01	ci left: 2.379140e-05	ci right 4.910231e-05	k: 32	n:920000
KS ci ratio: 4.552215e-03	ci left: 4.452751e-01	ci right 4.473078e-01	k: 410588	n:920000
ESYT2   920000 perm   484 sec   (1899 perm/sec)   p_kst 4.462913e-01   p_cons 3.478261e-05   p_joint 1.619565e-04

Joint ci ratio: 3.324650e-01	ci left: 1.246648e-04	ci right 1.753092e-04	k: 138	n:930000
Cons ci ratio: 6.722618e-01	ci left: 2.442559e-05	ci right 4.983219e-05	k: 33	n:930000
KS ci ratio: 4.527349e-03	ci left: 4.453162e-01	ci right 4.473379e-01	k: 415084	n:930000
ESYT2   930000 perm   493 sec   (1886 perm/sec)   p_kst 4.463269e-01   p_cons 3.548387e-05   p_joint 1.483871e-04

Joint ci ratio: 3.312756e-01	ci left: 1.243137e-04	ci right 1.745963e-04	k: 139	n:940000
Cons ci ratio: 6.722619e-01	ci left: 2.416574e-05	ci right 4.930206e-05	k: 33	n:940000
KS ci ratio: 4.502653e-03	ci left: 4.453819e-01	ci right 4.473929e-01	k: 419604	n:940000
ESYT2   940000 perm   502 sec   (1874 perm/sec)   p_kst 4.463872e-01   p_cons 3.510638e-05   p_joint 1.478723e-04

Joint ci ratio: 3.289343e-01	ci left: 1.249360e-04	ci right 1.750376e-04	k: 141	n:950000
Cons ci ratio: 6.722621e-01	ci left: 2.391136e-05	ci right 4.878310e-05	k: 33	n:950000
KS ci ratio: 4.478748e-03	ci left: 4.454031e-01	ci right 4.474035e-01	k: 424083	n:950000
ESYT2   950000 perm   510 sec   (1862 perm/sec)   p_kst 4.464032e-01   p_cons 3.473684e-05   p_joint 1.484211e-04

Joint ci ratio: 3.671196e-01	ci left: 9.700928e-05	ci right 1.415162e-04	k: 113	n:960000
Cons ci ratio: 6.722622e-01	ci left: 2.366228e-05	ci right 4.827494e-05	k: 33	n:960000
KS ci ratio: 4.455408e-03	ci left: 4.454031e-01	ci right 4.473930e-01	k: 428542	n:960000
ESYT2   960000 perm   519 sec   (1849 perm/sec)   p_kst 4.463979e-01   p_cons 3.437500e-05   p_joint 1.177083e-04

Joint ci ratio: 3.655200e-01	ci left: 9.694522e-05	ci right 1.411827e-04	k: 114	n:970000
Cons ci ratio: 6.722623e-01	ci left: 2.341834e-05	ci right 4.777727e-05	k: 33	n:970000
KS ci ratio: 4.432327e-03	ci left: 4.454145e-01	ci right 4.473941e-01	k: 433012	n:970000
ESYT2   970000 perm   528 sec   (1837 perm/sec)   p_kst 4.464041e-01   p_cons 3.402062e-05   p_joint 1.175258e-04

Joint ci ratio: 3.655203e-01	ci left: 9.595597e-05	ci right 1.397421e-04	k: 114	n:980000
Cons ci ratio: 6.722624e-01	ci left: 2.317938e-05	ci right 4.728975e-05	k: 33	n:980000
KS ci ratio: 4.409646e-03	ci left: 4.454205e-01	ci right 4.473900e-01	k: 437477	n:980000
ESYT2   980000 perm   537 sec   (1826 perm/sec)   p_kst 4.464051e-01   p_cons 3.367347e-05   p_joint 1.163265e-04

Joint ci ratio: 3.593240e-01	ci left: 9.865927e-05	ci right 1.427372e-04	k: 118	n:990000
Cons ci ratio: 6.625889e-01	ci left: 2.378394e-05	ci right 4.799118e-05	k: 34	n:990000
KS ci ratio: 4.386916e-03	ci left: 4.454709e-01	ci right 4.474304e-01	k: 441986	n:990000
ESYT2   990000 perm   546 sec   (1814 perm/sec)   p_kst 4.464505e-01   p_cons 3.434343e-05   p_joint 1.191919e-04

Joint ci ratio: 3.578238e-01	ci left: 9.858259e-05	ci right 1.423996e-04	k: 119	n:1000000
Cons ci ratio: 6.625890e-01	ci left: 2.354610e-05	ci right 4.751127e-05	k: 34	n:1000000
KS ci ratio: 4.364392e-03	ci left: 4.455363e-01	ci right 4.474860e-01	k: 446511	n:1000000
ESYT2   1000000 perm   555 sec   (1802 perm/sec)   p_kst 4.465110e-01   p_cons 3.400000e-05   p_joint 1.190000e-04

Joint ci ratio: 3.563421e-01	ci left: 9.850781e-05	ci right 1.420682e-04	k: 120	n:1010000
Cons ci ratio: 6.625891e-01	ci left: 2.331297e-05	ci right 4.704087e-05	k: 34	n:1010000
KS ci ratio: 4.343612e-03	ci left: 4.454410e-01	ci right 4.473810e-01	k: 450875	n:1010000
ESYT2   1010000 perm   564 sec   (1791 perm/sec)   p_kst 4.464109e-01   p_cons 3.366337e-05   p_joint 1.188119e-04

Joint ci ratio: 3.548787e-01	ci left: 9.843486e-05	ci right 1.417430e-04	k: 121	n:1020000
Cons ci ratio: 6.625892e-01	ci left: 2.308441e-05	ci right 4.657968e-05	k: 34	n:1020000
KS ci ratio: 4.321883e-03	ci left: 4.454898e-01	ci right 4.474203e-01	k: 455384	n:1020000
ESYT2   1020000 perm   573 sec   (1779 perm/sec)   p_kst 4.464549e-01   p_cons 3.333333e-05   p_joint 1.186275e-04

Joint ci ratio: 3.534332e-01	ci left: 9.836368e-05	ci right 1.414238e-04	k: 122	n:1030000
Cons ci ratio: 6.533216e-01	ci left: 2.366883e-05	ci right 4.725845e-05	k: 35	n:1030000
KS ci ratio: 4.301312e-03	ci left: 4.454416e-01	ci right 4.473626e-01	k: 459794	n:1030000
ESYT2   1030000 perm   583 sec   (1768 perm/sec)   p_kst 4.464019e-01   p_cons 3.398058e-05   p_joint 1.184466e-04

Joint ci ratio: 3.505942e-01	ci left: 9.917093e-05	ci right 1.421564e-04	k: 124	n:1040000
Cons ci ratio: 6.533217e-01	ci left: 2.344125e-05	ci right 4.680405e-05	k: 35	n:1040000
KS ci ratio: 4.280517e-03	ci left: 4.454539e-01	ci right 4.473657e-01	k: 464266	n:1040000
ESYT2   1040000 perm   592 sec   (1756 perm/sec)   p_kst 4.464096e-01   p_cons 3.365385e-05   p_joint 1.192308e-04

Joint ci ratio: 3.478225e-01	ci left: 9.996416e-05	ci right 1.428737e-04	k: 126	n:1050000
Cons ci ratio: 6.444324e-01	ci left: 2.401340e-05	ci right 4.746557e-05	k: 36	n:1050000
KS ci ratio: 4.260274e-03	ci left: 4.454364e-01	ci right 4.473391e-01	k: 468707	n:1050000
ESYT2   1050000 perm   602 sec   (1745 perm/sec)   p_kst 4.463876e-01   p_cons 3.428571e-05   p_joint 1.200000e-04

Joint ci ratio: 3.464612e-01	ci left: 9.988225e-05	ci right 1.425511e-04	k: 127	n:1060000
Cons ci ratio: 6.444325e-01	ci left: 2.378686e-05	ci right 4.701778e-05	k: 36	n:1060000
KS ci ratio: 4.240494e-03	ci left: 4.453986e-01	ci right 4.472922e-01	k: 473126	n:1060000
ESYT2   1060000 perm   611 sec   (1734 perm/sec)   p_kst 4.463453e-01   p_cons 3.396226e-05   p_joint 1.198113e-04

Joint ci ratio: 3.451158e-01	ci left: 9.980219e-05	ci right 1.422343e-04	k: 128	n:1070000
Cons ci ratio: 6.444326e-01	ci left: 2.356455e-05	ci right 4.657837e-05	k: 36	n:1070000
KS ci ratio: 4.220388e-03	ci left: 4.454316e-01	ci right 4.473164e-01	k: 477620	n:1070000
ESYT2   1070000 perm   621 sec   (1723 perm/sec)   p_kst 4.463738e-01   p_cons 3.364486e-05   p_joint 1.196262e-04

Joint ci ratio: 3.437859e-01	ci left: 9.972393e-05	ci right 1.419230e-04	k: 129	n:1080000
Cons ci ratio: 6.444327e-01	ci left: 2.334636e-05	ci right 4.614709e-05	k: 36	n:1080000
KS ci ratio: 4.200511e-03	ci left: 4.454705e-01	ci right 4.473465e-01	k: 482121	n:1080000
ESYT2   1080000 perm   630 sec   (1713 perm/sec)   p_kst 4.464083e-01   p_cons 3.333333e-05   p_joint 1.194444e-04

Joint ci ratio: 3.411714e-01	ci left: 1.004861e-04	ci right 1.426130e-04	k: 131	n:1090000
Cons ci ratio: 6.358966e-01	ci left: 2.390049e-05	ci right 4.678835e-05	k: 37	n:1090000
KS ci ratio: 4.181424e-03	ci left: 4.454481e-01	ci right 4.473155e-01	k: 486556	n:1090000
ESYT2   1090000 perm   640 sec   (1703 perm/sec)   p_kst 4.463817e-01   p_cons 3.394495e-05   p_joint 1.201835e-04

Joint ci ratio: 3.386156e-01	ci left: 1.012356e-04	ci right 1.432893e-04	k: 133	n:1100000
Cons ci ratio: 6.358967e-01	ci left: 2.368321e-05	ci right 4.636300e-05	k: 37	n:1100000
KS ci ratio: 4.162564e-03	ci left: 4.454298e-01	ci right 4.472887e-01	k: 490995	n:1100000
ESYT2   1100000 perm   650 sec   (1692 perm/sec)   p_kst 4.463591e-01   p_cons 3.363636e-05   p_joint 1.209091e-04

Joint ci ratio: 3.361165e-01	ci left: 1.019728e-04	ci right 1.439523e-04	k: 135	n:1110000
Cons ci ratio: 6.358968e-01	ci left: 2.346985e-05	ci right 4.594532e-05	k: 37	n:1110000
KS ci ratio: 4.143814e-03	ci left: 4.454290e-01	ci right 4.472794e-01	k: 495453	n:1110000
ESYT2   1110000 perm   660 sec   (1682 perm/sec)   p_kst 4.463541e-01   p_cons 3.333333e-05   p_joint 1.216216e-04

Joint ci ratio: 3.398868e-01	ci left: 9.861100e-05	ci right 1.397620e-04	k: 132	n:1120000
Cons ci ratio: 6.358969e-01	ci left: 2.326029e-05	ci right 4.553510e-05	k: 37	n:1120000
KS ci ratio: 4.125300e-03	ci left: 4.454299e-01	ci right 4.472721e-01	k: 499913	n:1120000
ESYT2   1120000 perm   670 sec   (1672 perm/sec)   p_kst 4.463509e-01   p_cons 3.303571e-05   p_joint 1.178571e-04

Joint ci ratio: 3.424720e-01	ci left: 9.612003e-05	ci right 1.366042e-04	k: 130	n:1130000
Cons ci ratio: 6.358970e-01	ci left: 2.305445e-05	ci right 4.513213e-05	k: 37	n:1130000
KS ci ratio: 4.106524e-03	ci left: 4.454920e-01	ci right 4.473260e-01	k: 504442	n:1130000
ESYT2   1130000 perm   680 sec   (1662 perm/sec)   p_kst 4.464088e-01   p_cons 3.274336e-05   p_joint 1.150442e-04

Joint ci ratio: 3.411723e-01	ci left: 9.607877e-05	ci right 1.363582e-04	k: 131	n:1140000
Cons ci ratio: 6.358971e-01	ci left: 2.285222e-05	ci right 4.473624e-05	k: 37	n:1140000
KS ci ratio: 4.088800e-03	ci left: 4.454565e-01	ci right 4.472824e-01	k: 508861	n:1140000
ESYT2   1140000 perm   690 sec   (1652 perm/sec)   p_kst 4.463693e-01   p_cons 3.245614e-05   p_joint 1.149123e-04

Joint ci ratio: 3.386165e-01	ci left: 9.683402e-05	ci right 1.370594e-04	k: 133	n:1150000
Cons ci ratio: 6.358972e-01	ci left: 2.265350e-05	ci right 4.434723e-05	k: 37	n:1150000
KS ci ratio: 4.071763e-03	ci left: 4.453659e-01	ci right 4.471839e-01	k: 513216	n:1150000
ESYT2   1150000 perm   700 sec   (1642 perm/sec)   p_kst 4.462748e-01   p_cons 3.217391e-05   p_joint 1.156522e-04

Joint ci ratio: 3.386167e-01	ci left: 9.599923e-05	ci right 1.358779e-04	k: 133	n:1160000
Cons ci ratio: 6.358973e-01	ci left: 2.245821e-05	ci right 4.396493e-05	k: 37	n:1160000
KS ci ratio: 4.054271e-03	ci left: 4.453580e-01	ci right 4.471681e-01	k: 517665	n:1160000
ESYT2   1160000 perm   711 sec   (1632 perm/sec)   p_kst 4.462629e-01   p_cons 3.189655e-05   p_joint 1.146552e-04

Joint ci ratio: 3.505966e-01	ci left: 8.815185e-05	ci right 1.263614e-04	k: 124	n:1170000
Cons ci ratio: 6.358974e-01	ci left: 2.226626e-05	ci right 4.358916e-05	k: 37	n:1170000
KS ci ratio: 4.037241e-03	ci left: 4.453212e-01	ci right 4.471235e-01	k: 522080	n:1170000
ESYT2   1170000 perm   721 sec   (1622 perm/sec)   p_kst 4.462222e-01   p_cons 3.162393e-05   p_joint 1.059829e-04

Joint ci ratio: 3.492026e-01	ci left: 8.817778e-05	ci right 1.262122e-04	k: 125	n:1180000
Cons ci ratio: 6.276917e-01	ci left: 2.278913e-05	ci right 4.420140e-05	k: 38	n:1180000
KS ci ratio: 4.019410e-03	ci left: 4.454096e-01	ci right 4.472043e-01	k: 526642	n:1180000
ESYT2   1180000 perm   731 sec   (1613 perm/sec)   p_kst 4.463068e-01   p_cons 3.220339e-05   p_joint 1.059322e-04

Joint ci ratio: 3.492027e-01	ci left: 8.743678e-05	ci right 1.251516e-04	k: 125	n:1190000
Cons ci ratio: 6.276918e-01	ci left: 2.259763e-05	ci right 4.382997e-05	k: 38	n:1190000
KS ci ratio: 4.003004e-03	ci left: 4.453494e-01	ci right 4.471365e-01	k: 531029	n:1190000
ESYT2   1190000 perm   742 sec   (1604 perm/sec)   p_kst 4.462429e-01   p_cons 3.193277e-05   p_joint 1.050420e-04

Joint ci ratio: 3.492029e-01	ci left: 8.670814e-05	ci right 1.241086e-04	k: 125	n:1200000
Cons ci ratio: 6.276919e-01	ci left: 2.240931e-05	ci right 4.346472e-05	k: 38	n:1200000
KS ci ratio: 3.985990e-03	ci left: 4.453903e-01	ci right 4.471700e-01	k: 535536	n:1200000
ESYT2   1200000 perm   752 sec   (1595 perm/sec)   p_kst 4.462800e-01   p_cons 3.166667e-05   p_joint 1.041667e-04

Joint ci ratio: 3.478254e-01	ci left: 8.674565e-05	ci right 1.239815e-04	k: 126	n:1210000
Cons ci ratio: 6.197959e-01	ci left: 2.291978e-05	ci right 4.406113e-05	k: 39	n:1210000
KS ci ratio: 3.969583e-03	ci left: 4.453818e-01	ci right 4.471540e-01	k: 539984	n:1210000
ESYT2   1210000 perm   763 sec   (1586 perm/sec)   p_kst 4.462678e-01   p_cons 3.223140e-05   p_joint 1.041322e-04

Joint ci ratio: 3.464640e-01	ci left: 8.678283e-05	ci right 1.238561e-04	k: 127	n:1220000
Cons ci ratio: 6.048585e-01	ci left: 2.411675e-05	ci right 4.559082e-05	k: 41	n:1220000
KS ci ratio: 3.953528e-03	ci left: 4.453545e-01	ci right 4.471195e-01	k: 544409	n:1220000
ESYT2   1220000 perm   774 sec   (1577 perm/sec)   p_kst 4.462369e-01   p_cons 3.360656e-05   p_joint 1.040984e-04

Joint ci ratio: 3.464642e-01	ci left: 8.607727e-05	ci right 1.228491e-04	k: 127	n:1230000
Cons ci ratio: 6.048586e-01	ci left: 2.392068e-05	ci right 4.522016e-05	k: 41	n:1230000
KS ci ratio: 3.937310e-03	ci left: 4.453724e-01	ci right 4.471303e-01	k: 548889	n:1230000
ESYT2   1230000 perm   784 sec   (1568 perm/sec)   p_kst 4.462512e-01   p_cons 3.333333e-05   p_joint 1.032520e-04

Joint ci ratio: 3.464643e-01	ci left: 8.538309e-05	ci right 1.218584e-04	k: 127	n:1240000
Cons ci ratio: 6.048586e-01	ci left: 2.372777e-05	ci right 4.485549e-05	k: 41	n:1240000
KS ci ratio: 3.921801e-03	ci left: 4.453256e-01	ci right 4.470763e-01	k: 553289	n:1240000
ESYT2   1240000 perm   795 sec   (1560 perm/sec)   p_kst 4.462008e-01   p_cons 3.306452e-05   p_joint 1.024194e-04

Joint ci ratio: 3.464644e-01	ci left: 8.470002e-05	ci right 1.208836e-04	k: 127	n:1250000
Cons ci ratio: 6.048587e-01	ci left: 2.353795e-05	ci right 4.449664e-05	k: 41	n:1250000
KS ci ratio: 3.905318e-03	ci left: 4.454259e-01	ci right 4.471696e-01	k: 557872	n:1250000
ESYT2   1250000 perm   806 sec   (1551 perm/sec)   p_kst 4.462976e-01   p_cons 3.280000e-05   p_joint 1.016000e-04

Joint ci ratio: 3.437889e-01	ci left: 8.547754e-05	ci right 1.216485e-04	k: 129	n:1260000
Cons ci ratio: 5.977840e-01	ci left: 2.402384e-05	ci right 4.505672e-05	k: 42	n:1260000
KS ci ratio: 3.889896e-03	ci left: 4.454159e-01	ci right 4.471526e-01	k: 562318	n:1260000
ESYT2   1260000 perm   817 sec   (1543 perm/sec)   p_kst 4.462841e-01   p_cons 3.333333e-05   p_joint 1.023810e-04

Joint ci ratio: 3.411743e-01	ci left: 8.624386e-05	ci right 1.224004e-04	k: 131	n:1270000
Cons ci ratio: 5.843485e-01	ci left: 2.517371e-05	ci right 4.650992e-05	k: 44	n:1270000
KS ci ratio: 3.874575e-03	ci left: 4.454163e-01	ci right 4.471462e-01	k: 566777	n:1270000
ESYT2   1270000 perm   827 sec   (1535 perm/sec)   p_kst 4.462811e-01   p_cons 3.464567e-05   p_joint 1.031496e-04

Joint ci ratio: 3.398893e-01	ci left: 8.628453e-05	ci right 1.222919e-04	k: 132	n:1280000
Cons ci ratio: 5.843486e-01	ci left: 2.497704e-05	ci right 4.614656e-05	k: 44	n:1280000
KS ci ratio: 3.858927e-03	ci left: 4.454815e-01	ci right 4.472047e-01	k: 571319	n:1280000
ESYT2   1280000 perm   838 sec   (1527 perm/sec)   p_kst 4.463430e-01   p_cons 3.437500e-05   p_joint 1.031250e-04

Joint ci ratio: 3.398895e-01	ci left: 8.561565e-05	ci right 1.213439e-04	k: 132	n:1290000
Cons ci ratio: 5.843487e-01	ci left: 2.478341e-05	ci right 4.578884e-05	k: 44	n:1290000
KS ci ratio: 3.843690e-03	ci left: 4.455171e-01	ci right 4.472336e-01	k: 575824	n:1290000
ESYT2   1290000 perm   850 sec   (1518 perm/sec)   p_kst 4.463752e-01   p_cons 3.410853e-05   p_joint 1.023256e-04

Joint ci ratio: 3.373622e-01	ci left: 8.636473e-05	ci right 1.220793e-04	k: 134	n:1300000
Cons ci ratio: 5.779620e-01	ci left: 2.524881e-05	ci right 4.631784e-05	k: 45	n:1300000
KS ci ratio: 3.828489e-03	ci left: 4.455706e-01	ci right 4.472804e-01	k: 580353	n:1300000
ESYT2   1300000 perm   861 sec   (1510 perm/sec)   p_kst 4.464254e-01   p_cons 3.461538e-05   p_joint 1.030769e-04

Joint ci ratio: 3.348906e-01	ci left: 8.710334e-05	ci right 1.228025e-04	k: 136	n:1310000
Cons ci ratio: 5.779621e-01	ci left: 2.505607e-05	ci right 4.596427e-05	k: 45	n:1310000
KS ci ratio: 3.813432e-03	ci left: 4.456278e-01	ci right 4.473312e-01	k: 584888	n:1310000
ESYT2   1310000 perm   872 sec   (1502 perm/sec)   p_kst 4.464794e-01   p_cons 3.435115e-05   p_joint 1.038168e-04

Joint ci ratio: 3.348907e-01	ci left: 8.644346e-05	ci right 1.218722e-04	k: 136	n:1320000
Cons ci ratio: 5.779622e-01	ci left: 2.486625e-05	ci right 4.561606e-05	k: 45	n:1320000
KS ci ratio: 3.799273e-03	ci left: 4.455903e-01	ci right 4.472872e-01	k: 589299	n:1320000
ESYT2   1320000 perm   884 sec   (1493 perm/sec)   p_kst 4.464386e-01   p_cons 3.409091e-05   p_joint 1.030303e-04

Joint ci ratio: 3.324726e-01	ci left: 8.717130e-05	ci right 1.225851e-04	k: 138	n:1330000
Cons ci ratio: 5.779623e-01	ci left: 2.467928e-05	ci right 4.527308e-05	k: 45	n:1330000
KS ci ratio: 3.784948e-03	ci left: 4.455955e-01	ci right 4.472860e-01	k: 593766	n:1330000
ESYT2   1330000 perm   896 sec   (1485 perm/sec)   p_kst 4.464406e-01   p_cons 3.383459e-05   p_joint 1.037594e-04

Joint ci ratio: 3.324727e-01	ci left: 8.652076e-05	ci right 1.216703e-04	k: 138	n:1340000
Cons ci ratio: 5.717805e-01	ci left: 2.513278e-05	ci right 4.578896e-05	k: 46	n:1340000
KS ci ratio: 3.770585e-03	ci left: 4.456267e-01	ci right 4.473109e-01	k: 598268	n:1340000
ESYT2   1340000 perm   907 sec   (1477 perm/sec)   p_kst 4.464687e-01   p_cons 3.432836e-05   p_joint 1.029851e-04

Joint ci ratio: 3.277894e-01	ci left: 8.859731e-05	ci right 1.239767e-04	k: 142	n:1350000
Cons ci ratio: 5.657930e-01	ci left: 2.558073e-05	ci right 4.629606e-05	k: 47	n:1350000
KS ci ratio: 3.756249e-03	ci left: 4.456752e-01	ci right 4.473532e-01	k: 602794	n:1350000
ESYT2   1350000 perm   919 sec   (1469 perm/sec)   p_kst 4.465141e-01   p_cons 3.481481e-05   p_joint 1.051852e-04

Joint ci ratio: 3.266493e-01	ci left: 8.862075e-05	ci right 1.238606e-04	k: 143	n:1360000
Cons ci ratio: 5.657931e-01	ci left: 2.539263e-05	ci right 4.595565e-05	k: 47	n:1360000
KS ci ratio: 3.742169e-03	ci left: 4.457106e-01	ci right 4.473823e-01	k: 607303	n:1360000
ESYT2   1360000 perm   931 sec   (1461 perm/sec)   p_kst 4.465463e-01   p_cons 3.455882e-05   p_joint 1.051471e-04

Joint ci ratio: 3.244041e-01	ci left: 8.931447e-05	ci right 1.245352e-04	k: 145	n:1370000
Cons ci ratio: 5.657931e-01	ci left: 2.520728e-05	ci right 4.562021e-05	k: 47	n:1370000
KS ci ratio: 3.728473e-03	ci left: 4.457155e-01	ci right 4.473811e-01	k: 611771	n:1370000
ESYT2   1370000 perm   942 sec   (1454 perm/sec)   p_kst 4.465482e-01   p_cons 3.430657e-05   p_joint 1.058394e-04

Joint ci ratio: 3.232988e-01	ci left: 8.933299e-05	ci right 1.244161e-04	k: 146	n:1380000
Cons ci ratio: 5.599899e-01	ci left: 2.564606e-05	ci right 4.611643e-05	k: 48	n:1380000
KS ci ratio: 3.714964e-03	ci left: 4.457152e-01	ci right 4.473748e-01	k: 616232	n:1380000
ESYT2   1380000 perm   954 sec   (1446 perm/sec)   p_kst 4.465449e-01   p_cons 3.478261e-05   p_joint 1.057971e-04

Joint ci ratio: 3.222047e-01	ci left: 8.935146e-05	ci right 1.242985e-04	k: 147	n:1390000
Cons ci ratio: 5.599899e-01	ci left: 2.546155e-05	ci right 4.578466e-05	k: 48	n:1390000
KS ci ratio: 3.701277e-03	ci left: 4.457582e-01	ci right 4.474118e-01	k: 620753	n:1390000
ESYT2   1390000 perm   966 sec   (1439 perm/sec)   p_kst 4.465849e-01   p_cons 3.453237e-05   p_joint 1.057554e-04

Joint ci ratio: 1.964638e-01	ci left: 2.563631e-04	ci right 3.128808e-04	k: 397	n:1400000
Cons ci ratio: 5.543616e-01	ci left: 2.589330e-05	ci right 4.627160e-05	k: 49	n:1400000
KS ci ratio: 3.688050e-03	ci left: 4.457591e-01	ci right 4.474068e-01	k: 625216	n:1400000
ESYT2   1400000 perm   978 sec   (1432 perm/sec)   p_kst 4.465829e-01   p_cons 3.500000e-05   p_joint 2.835714e-04

Joint ci ratio: 1.972089e-01	ci left: 2.525221e-04	ci right 3.084295e-04	k: 394	n:1410000
Cons ci ratio: 5.488997e-01	ci left: 2.631994e-05	ci right 4.675063e-05	k: 50	n:1410000
KS ci ratio: 3.674990e-03	ci left: 4.457565e-01	ci right 4.473983e-01	k: 629674	n:1410000
ESYT2   1410000 perm   990 sec   (1424 perm/sec)   p_kst 4.465773e-01   p_cons 3.546099e-05   p_joint 2.794326e-04

Joint ci ratio: 1.957277e-01	ci left: 2.547613e-04	ci right 3.106903e-04	k: 400	n:1420000
Cons ci ratio: 5.435960e-01	ci left: 2.674156e-05	ci right 4.722197e-05	k: 51	n:1420000
KS ci ratio: 3.662422e-03	ci left: 4.457060e-01	ci right 4.473421e-01	k: 634064	n:1420000
ESYT2   1420000 perm   1002 sec   (1417 perm/sec)   p_kst 4.465239e-01   p_cons 3.591549e-05   p_joint 2.816901e-04

Joint ci ratio: 1.949997e-01	ci left: 2.549750e-04	ci right 3.107180e-04	k: 403	n:1430000
Cons ci ratio: 5.435961e-01	ci left: 2.655455e-05	ci right 4.689175e-05	k: 51	n:1430000
KS ci ratio: 3.649601e-03	ci left: 4.457080e-01	ci right 4.473383e-01	k: 638528	n:1430000
ESYT2   1430000 perm   1014 sec   (1410 perm/sec)   p_kst 4.465231e-01   p_cons 3.566434e-05   p_joint 2.818182e-04

Joint ci ratio: 1.940414e-01	ci left: 2.558469e-04	ci right 3.114732e-04	k: 407	n:1440000
Cons ci ratio: 5.384433e-01	ci left: 2.696962e-05	ci right 4.735465e-05	k: 52	n:1440000
KS ci ratio: 3.637137e-03	ci left: 4.456795e-01	ci right 4.473041e-01	k: 642948	n:1440000
ESYT2   1440000 perm   1026 sec   (1403 perm/sec)   p_kst 4.464917e-01   p_cons 3.611111e-05   p_joint 2.826389e-04

Joint ci ratio: 1.935676e-01	ci left: 2.553948e-04	ci right 3.107712e-04	k: 409	n:1450000
Cons ci ratio: 5.384434e-01	ci left: 2.678362e-05	ci right 4.702807e-05	k: 52	n:1450000
KS ci ratio: 3.624508e-03	ci left: 4.456913e-01	ci right 4.473103e-01	k: 647426	n:1450000
ESYT2   1450000 perm   1038 sec   (1396 perm/sec)   p_kst 4.465007e-01   p_cons 3.586207e-05   p_joint 2.820690e-04

Joint ci ratio: 1.935677e-01	ci left: 2.536455e-04	ci right 3.086427e-04	k: 409	n:1460000
Cons ci ratio: 5.384435e-01	ci left: 2.660017e-05	ci right 4.670596e-05	k: 52	n:1460000
KS ci ratio: 3.611944e-03	ci left: 4.457119e-01	ci right 4.473253e-01	k: 651917	n:1460000
ESYT2   1460000 perm   1051 sec   (1389 perm/sec)   p_kst 4.465185e-01   p_cons 3.561644e-05   p_joint 2.801370e-04

Joint ci ratio: 1.917061e-01	ci left: 2.570998e-04	ci right 3.122473e-04	k: 417	n:1470000
Cons ci ratio: 5.334345e-01	ci left: 2.700735e-05	ci right 4.715981e-05	k: 53	n:1470000
KS ci ratio: 3.599380e-03	ci left: 4.457499e-01	ci right 4.473578e-01	k: 656434	n:1470000
ESYT2   1470000 perm   1063 sec   (1383 perm/sec)   p_kst 4.465537e-01   p_cons 3.605442e-05   p_joint 2.836735e-04

Joint ci ratio: 1.903447e-01	ci left: 2.592228e-04	ci right 3.143852e-04	k: 423	n:1480000
Cons ci ratio: 5.334345e-01	ci left: 2.682487e-05	ci right 4.684116e-05	k: 53	n:1480000
KS ci ratio: 3.586938e-03	ci left: 4.457887e-01	ci right 4.473912e-01	k: 660953	n:1480000
ESYT2   1480000 perm   1075 sec   (1376 perm/sec)   p_kst 4.465899e-01   p_cons 3.581081e-05   p_joint 2.858108e-04

Joint ci ratio: 1.903449e-01	ci left: 2.574831e-04	ci right 3.122753e-04	k: 423	n:1490000
Cons ci ratio: 5.334346e-01	ci left: 2.664483e-05	ci right 4.652680e-05	k: 53	n:1490000
KS ci ratio: 3.574701e-03	ci left: 4.458163e-01	ci right 4.474134e-01	k: 665456	n:1490000
ESYT2   1490000 perm   1088 sec   (1369 perm/sec)   p_kst 4.466148e-01   p_cons 3.557047e-05   p_joint 2.838926e-04

Joint ci ratio: 1.754541e-01	ci left: 3.034818e-04	ci right 3.624755e-04	k: 498	n:1500000
Cons ci ratio: 5.147111e-01	ci left: 2.878095e-05	ci right 4.923313e-05	k: 57	n:1500000
KS ci ratio: 3.562891e-03	ci left: 4.458015e-01	ci right 4.473933e-01	k: 669896	n:1500000
ESYT2   1500000 perm   1101 sec   (1363 perm/sec)   p_kst 4.465973e-01   p_cons 3.800000e-05   p_joint 3.320000e-04

Joint ci ratio: 1.752786e-01	ci left: 3.021051e-04	ci right 3.607664e-04	k: 499	n:1510000
Cons ci ratio: 5.103304e-01	ci left: 2.916690e-05	ci right 4.965432e-05	k: 58	n:1510000
KS ci ratio: 3.550840e-03	ci left: 4.458366e-01	ci right 4.474232e-01	k: 674411	n:1510000
ESYT2   1510000 perm   1113 sec   (1356 perm/sec)   p_kst 4.466298e-01   p_cons 3.841060e-05   p_joint 3.304636e-04

Joint ci ratio: 1.754544e-01	ci left: 2.994885e-04	ci right 3.577062e-04	k: 498	n:1520000
Cons ci ratio: 5.103305e-01	ci left: 2.897501e-05	ci right 4.932765e-05	k: 58	n:1520000
KS ci ratio: 3.538888e-03	ci left: 4.458746e-01	ci right 4.474559e-01	k: 678931	n:1520000
ESYT2   1520000 perm   1126 sec   (1350 perm/sec)   p_kst 4.466651e-01   p_cons 3.815789e-05   p_joint 3.276316e-04

Joint ci ratio: 1.747554e-01	ci left: 3.000309e-04	ci right 3.580971e-04	k: 502	n:1530000
Cons ci ratio: 5.103305e-01	ci left: 2.878563e-05	ci right 4.900525e-05	k: 58	n:1530000
KS ci ratio: 3.527055e-03	ci left: 4.459120e-01	ci right 4.474882e-01	k: 683451	n:1530000
ESYT2   1530000 perm   1139 sec   (1343 perm/sec)   p_kst 4.467000e-01   p_cons 3.790850e-05   p_joint 3.281046e-04

Joint ci ratio: 1.737222e-01	ci left: 3.018089e-04	ci right 3.598376e-04	k: 508	n:1540000
Cons ci ratio: 5.103306e-01	ci left: 2.859871e-05	ci right 4.868704e-05	k: 58	n:1540000
KS ci ratio: 3.515225e-03	ci left: 4.459652e-01	ci right 4.475363e-01	k: 687996	n:1540000
ESYT2   1540000 perm   1152 sec   (1337 perm/sec)   p_kst 4.467506e-01   p_cons 3.766234e-05   p_joint 3.298701e-04

Joint ci ratio: 1.733819e-01	ci left: 3.010960e-04	ci right 3.588624e-04	k: 510	n:1550000
Cons ci ratio: 5.103307e-01	ci left: 2.841420e-05	ci right 4.837293e-05	k: 58	n:1550000
KS ci ratio: 3.504139e-03	ci left: 4.459294e-01	ci right 4.474953e-01	k: 692404	n:1550000
ESYT2   1550000 perm   1165 sec   (1330 perm/sec)   p_kst 4.467123e-01   p_cons 3.741935e-05   p_joint 3.290323e-04

Joint ci ratio: 1.730437e-01	ci left: 3.003923e-04	ci right 3.578996e-04	k: 512	n:1560000
Cons ci ratio: 5.103307e-01	ci left: 2.823206e-05	ci right 4.806285e-05	k: 58	n:1560000
KS ci ratio: 3.492750e-03	ci left: 4.459517e-01	ci right 4.475126e-01	k: 696902	n:1560000
ESYT2   1560000 perm   1178 sec   (1324 perm/sec)   p_kst 4.467321e-01   p_cons 3.717949e-05   p_joint 3.282051e-04

Joint ci ratio: 1.732129e-01	ci left: 2.978696e-04	ci right 3.549555e-04	k: 511	n:1570000
Cons ci ratio: 5.103308e-01	ci left: 2.805224e-05	ci right 4.775672e-05	k: 58	n:1570000
KS ci ratio: 3.481543e-03	ci left: 4.459635e-01	ci right 4.475195e-01	k: 701384	n:1570000
ESYT2   1570000 perm   1192 sec   (1318 perm/sec)   p_kst 4.467414e-01   p_cons 3.694268e-05   p_joint 3.254777e-04

Joint ci ratio: 1.735524e-01	ci left: 2.947735e-04	ci right 3.513883e-04	k: 509	n:1580000
Cons ci ratio: 5.103308e-01	ci left: 2.787469e-05	ci right 4.745446e-05	k: 58	n:1580000
KS ci ratio: 3.470545e-03	ci left: 4.459607e-01	ci right 4.475117e-01	k: 705843	n:1580000
ESYT2   1580000 perm   1205 sec   (1311 perm/sec)   p_kst 4.467361e-01   p_cons 3.670886e-05   p_joint 3.221519e-04

Joint ci ratio: 1.735526e-01	ci left: 2.929195e-04	ci right 3.491783e-04	k: 509	n:1590000
Cons ci ratio: 5.103309e-01	ci left: 2.769938e-05	ci right 4.715601e-05	k: 58	n:1590000
KS ci ratio: 3.459748e-03	ci left: 4.459440e-01	ci right 4.474901e-01	k: 710280	n:1590000
ESYT2   1590000 perm   1218 sec   (1305 perm/sec)   p_kst 4.467170e-01   p_cons 3.647799e-05   p_joint 3.201258e-04

Joint ci ratio: 1.735528e-01	ci left: 2.910887e-04	ci right 3.469960e-04	k: 509	n:1600000
Cons ci ratio: 5.060602e-01	ci left: 2.807107e-05	ci right 4.756581e-05	k: 59	n:1600000
KS ci ratio: 3.448894e-03	ci left: 4.459501e-01	ci right 4.474914e-01	k: 714753	n:1600000
ESYT2   1600000 perm   1232 sec   (1299 perm/sec)   p_kst 4.467206e-01   p_cons 3.687500e-05   p_joint 3.181250e-04

Joint ci ratio: 1.728761e-01	ci left: 2.916575e-04	ci right 3.474328e-04	k: 513	n:1610000
Cons ci ratio: 5.018949e-01	ci left: 2.843883e-05	ci right 4.796986e-05	k: 60	n:1610000
KS ci ratio: 3.438163e-03	ci left: 4.459530e-01	ci right 4.474895e-01	k: 719221	n:1610000
ESYT2   1610000 perm   1245 sec   (1293 perm/sec)   p_kst 4.467211e-01   p_cons 3.726708e-05   p_joint 3.186335e-04

Joint ci ratio: 1.728763e-01	ci left: 2.898571e-04	ci right 3.452882e-04	k: 513	n:1620000
Cons ci ratio: 5.018950e-01	ci left: 2.826328e-05	ci right 4.767375e-05	k: 60	n:1620000
KS ci ratio: 3.427587e-03	ci left: 4.459478e-01	ci right 4.474795e-01	k: 723676	n:1620000
ESYT2   1620000 perm   1259 sec   (1286 perm/sec)   p_kst 4.467136e-01   p_cons 3.703704e-05   p_joint 3.166667e-04

Joint ci ratio: 1.742382e-01	ci left: 2.833840e-04	ci right 3.380490e-04	k: 505	n:1630000
Cons ci ratio: 4.978309e-01	ci left: 2.862599e-05	ci right 4.807156e-05	k: 61	n:1630000
KS ci ratio: 3.417062e-03	ci left: 4.459495e-01	ci right 4.474765e-01	k: 728142	n:1630000
ESYT2   1630000 perm   1273 sec   (1280 perm/sec)   p_kst 4.467129e-01   p_cons 3.742331e-05   p_joint 3.098160e-04

Joint ci ratio: 1.732141e-01	ci left: 2.851555e-04	ci right 3.398052e-04	k: 511	n:1640000
Cons ci ratio: 4.978309e-01	ci left: 2.845144e-05	ci right 4.777844e-05	k: 61	n:1640000
KS ci ratio: 3.406368e-03	ci left: 4.459895e-01	ci right 4.475119e-01	k: 732671	n:1640000
ESYT2   1640000 perm   1287 sec   (1274 perm/sec)   p_kst 4.467506e-01   p_cons 3.719512e-05   p_joint 3.115854e-04

Joint ci ratio: 1.723743e-01	ci left: 2.863266e-04	ci right 3.409070e-04	k: 516	n:1650000
Cons ci ratio: 4.938640e-01	ci left: 2.880924e-05	ci right 4.817017e-05	k: 62	n:1650000
KS ci ratio: 3.395832e-03	ci left: 4.460206e-01	ci right 4.475384e-01	k: 737186	n:1650000
ESYT2   1650000 perm   1301 sec   (1268 perm/sec)   p_kst 4.467794e-01   p_cons 3.757576e-05   p_joint 3.127273e-04

Joint ci ratio: 1.718764e-01	ci left: 2.863311e-04	ci right 3.407383e-04	k: 519	n:1660000
Cons ci ratio: 4.938641e-01	ci left: 2.863569e-05	ci right 4.787999e-05	k: 62	n:1660000
KS ci ratio: 3.386000e-03	ci left: 4.459628e-01	ci right 4.474760e-01	k: 741554	n:1660000
ESYT2   1660000 perm   1315 sec   (1263 perm/sec)   p_kst 4.467193e-01   p_cons 3.734940e-05   p_joint 3.126506e-04

Joint ci ratio: 1.718766e-01	ci left: 2.846165e-04	ci right 3.386980e-04	k: 519	n:1670000
Cons ci ratio: 4.938641e-01	ci left: 2.846421e-05	ci right 4.759328e-05	k: 62	n:1670000
KS ci ratio: 3.375869e-03	ci left: 4.459619e-01	ci right 4.474706e-01	k: 746016	n:1670000
ESYT2   1670000 perm   1329 sec   (1257 perm/sec)   p_kst 4.467162e-01   p_cons 3.712575e-05   p_joint 3.107784e-04

Joint ci ratio: 1.713829e-01	ci left: 2.846314e-04	ci right 3.385443e-04	k: 522	n:1680000
Cons ci ratio: 4.938642e-01	ci left: 2.829478e-05	ci right 4.730999e-05	k: 62	n:1680000
KS ci ratio: 3.365985e-03	ci left: 4.459379e-01	ci right 4.474420e-01	k: 750439	n:1680000
ESYT2   1680000 perm   1344 sec   (1250 perm/sec)   p_kst 4.466899e-01   p_cons 3.690476e-05   p_joint 3.107143e-04

Joint ci ratio: 1.705694e-01	ci left: 2.857792e-04	ci right 3.396261e-04	k: 527	n:1690000
Cons ci ratio: 4.899906e-01	ci left: 2.864564e-05	ci right 4.769464e-05	k: 63	n:1690000
KS ci ratio: 3.356229e-03	ci left: 4.459083e-01	ci right 4.474079e-01	k: 754852	n:1690000
ESYT2   1690000 perm   1358 sec   (1245 perm/sec)   p_kst 4.466580e-01   p_cons 3.727811e-05   p_joint 3.118343e-04

Joint ci ratio: 1.700869e-01	ci left: 2.857876e-04	ci right 3.394682e-04	k: 530	n:1700000
Cons ci ratio: 4.862067e-01	ci left: 2.899294e-05	ci right 4.807420e-05	k: 64	n:1700000
KS ci ratio: 3.346620e-03	ci left: 4.458695e-01	ci right 4.473648e-01	k: 759249	n:1700000
ESYT2   1700000 perm   1372 sec   (1239 perm/sec)   p_kst 4.466171e-01   p_cons 3.764706e-05   p_joint 3.117647e-04

Joint ci ratio: 1.699271e-01	ci left: 2.846762e-04	ci right 3.380926e-04	k: 531	n:1710000
Cons ci ratio: 4.862068e-01	ci left: 2.882339e-05	ci right 4.779307e-05	k: 64	n:1710000
KS ci ratio: 3.336635e-03	ci left: 4.458991e-01	ci right 4.473900e-01	k: 763762	n:1710000
ESYT2   1710000 perm   1386 sec   (1233 perm/sec)   p_kst 4.466444e-01   p_cons 3.742690e-05   p_joint 3.105263e-04

Joint ci ratio: 1.707317e-01	ci left: 2.802380e-04	ci right 3.330963e-04	k: 526	n:1720000
Cons ci ratio: 4.862068e-01	ci left: 2.865581e-05	ci right 4.751520e-05	k: 64	n:1720000
KS ci ratio: 3.327244e-03	ci left: 4.458534e-01	ci right 4.473398e-01	k: 768146	n:1720000
ESYT2   1720000 perm   1401 sec   (1228 perm/sec)   p_kst 4.465965e-01   p_cons 3.720930e-05   p_joint 3.058140e-04

Joint ci ratio: 1.357872e-01	ci left: 4.488042e-04	ci right 5.147364e-04	k: 832	n:1730000
Cons ci ratio: 4.825093e-01	ci left: 2.899759e-05	ci right 4.788868e-05	k: 65	n:1730000
KS ci ratio: 3.317540e-03	ci left: 4.458665e-01	ci right 4.473487e-01	k: 772631	n:1730000
ESYT2   1730000 perm   1415 sec   (1222 perm/sec)   p_kst 4.466075e-01   p_cons 3.757225e-05   p_joint 4.809249e-04

Joint ci ratio: 1.357059e-01	ci left: 4.467800e-04	ci right 5.123724e-04	k: 833	n:1740000
Cons ci ratio: 4.825094e-01	ci left: 2.883094e-05	ci right 4.761345e-05	k: 65	n:1740000
KS ci ratio: 3.307721e-03	ci left: 4.459094e-01	ci right 4.473873e-01	k: 777168	n:1740000
ESYT2   1740000 perm   1430 sec   (1217 perm/sec)   p_kst 4.466483e-01   p_cons 3.735632e-05   p_joint 4.787356e-04

Joint ci ratio: 1.358692e-01	ci left: 4.431229e-04	ci right 5.082630e-04	k: 831	n:1750000
Cons ci ratio: 4.788949e-01	ci left: 2.916834e-05	ci right 4.798157e-05	k: 66	n:1750000
KS ci ratio: 3.298380e-03	ci left: 4.458930e-01	ci right 4.473667e-01	k: 781602	n:1750000
ESYT2   1750000 perm   1444 sec   (1212 perm/sec)   p_kst 4.466297e-01   p_cons 3.771429e-05   p_joint 4.748571e-04

Joint ci ratio: 1.359511e-01	ci left: 4.400563e-04	ci right 5.047877e-04	k: 830	n:1760000
Cons ci ratio: 4.788950e-01	ci left: 2.900261e-05	ci right 4.770895e-05	k: 66	n:1760000
KS ci ratio: 3.289293e-03	ci left: 4.458506e-01	ci right 4.473201e-01	k: 785990	n:1760000
ESYT2   1760000 perm   1459 sec   (1206 perm/sec)   p_kst 4.465852e-01   p_cons 3.750000e-05   p_joint 4.715909e-04

Joint ci ratio: 1.353013e-01	ci left: 4.419365e-04	ci right 5.066088e-04	k: 838	n:1770000
Cons ci ratio: 4.753606e-01	ci left: 2.933575e-05	ci right 4.807186e-05	k: 67	n:1770000
KS ci ratio: 3.279905e-03	ci left: 4.458652e-01	ci right 4.473305e-01	k: 790478	n:1770000
ESYT2   1770000 perm   1474 sec   (1201 perm/sec)   p_kst 4.465977e-01   p_cons 3.785311e-05   p_joint 4.734463e-04

Joint ci ratio: 1.349800e-01	ci left: 4.416249e-04	ci right 5.060858e-04	k: 842	n:1780000
Cons ci ratio: 4.753606e-01	ci left: 2.917095e-05	ci right 4.780180e-05	k: 67	n:1780000
KS ci ratio: 3.270890e-03	ci left: 4.458352e-01	ci right 4.472964e-01	k: 794887	n:1780000
ESYT2   1780000 perm   1488 sec   (1196 perm/sec)   p_kst 4.465657e-01   p_cons 3.764045e-05   p_joint 4.730337e-04

Joint ci ratio: 1.345021e-01	ci left: 4.423967e-04	ci right 5.067234e-04	k: 848	n:1790000
Cons ci ratio: 4.753607e-01	ci left: 2.900798e-05	ci right 4.753475e-05	k: 67	n:1790000
KS ci ratio: 3.261367e-03	ci left: 4.458939e-01	ci right 4.473510e-01	k: 799454	n:1790000
ESYT2   1790000 perm   1503 sec   (1191 perm/sec)   p_kst 4.466223e-01   p_cons 3.743017e-05   p_joint 4.737430e-04

Joint ci ratio: 1.345816e-01	ci left: 4.394021e-04	ci right 5.033341e-04	k: 847	n:1800000
Cons ci ratio: 4.719034e-01	ci left: 2.933604e-05	ci right 4.789209e-05	k: 68	n:1800000
KS ci ratio: 3.252172e-03	ci left: 4.459147e-01	ci right 4.473677e-01	k: 803954	n:1800000
ESYT2   1800000 perm   1518 sec   (1186 perm/sec)   p_kst 4.466411e-01   p_cons 3.777778e-05   p_joint 4.705556e-04

Joint ci ratio: 1.340295e-01	ci left: 4.407119e-04	ci right 5.045505e-04	k: 854	n:1810000
Cons ci ratio: 4.719034e-01	ci left: 2.917396e-05	ci right 4.762750e-05	k: 68	n:1810000
KS ci ratio: 3.243224e-03	ci left: 4.459093e-01	ci right 4.473583e-01	k: 808407	n:1810000
ESYT2   1810000 perm   1533 sec   (1180 perm/sec)   p_kst 4.466337e-01   p_cons 3.756906e-05   p_joint 4.718232e-04

Joint ci ratio: 1.366117e-01	ci left: 4.213029e-04	ci right 4.836013e-04	k: 822	n:1820000
Cons ci ratio: 4.719035e-01	ci left: 2.901366e-05	ci right 4.736581e-05	k: 68	n:1820000
KS ci ratio: 3.234612e-03	ci left: 4.458638e-01	ci right 4.473089e-01	k: 812787	n:1820000
ESYT2   1820000 perm   1549 sec   (1175 perm/sec)   p_kst 4.465863e-01   p_cons 3.736264e-05   p_joint 4.516484e-04

Joint ci ratio: 1.363634e-01	ci left: 4.205840e-04	ci right 4.826540e-04	k: 825	n:1830000
Cons ci ratio: 4.719035e-01	ci left: 2.885512e-05	ci right 4.710698e-05	k: 68	n:1830000
KS ci ratio: 3.225862e-03	ci left: 4.458506e-01	ci right 4.472917e-01	k: 817225	n:1830000
ESYT2   1830000 perm   1564 sec   (1170 perm/sec)   p_kst 4.465710e-01   p_cons 3.715847e-05   p_joint 4.508197e-04

Joint ci ratio: 1.371970e-01	ci left: 4.130493e-04	ci right 4.744104e-04	k: 815	n:1840000
Cons ci ratio: 4.719036e-01	ci left: 2.869830e-05	ci right 4.685097e-05	k: 68	n:1840000
KS ci ratio: 3.216956e-03	ci left: 4.458723e-01	ci right 4.473094e-01	k: 821727	n:1840000
ESYT2   1840000 perm   1579 sec   (1165 perm/sec)   p_kst 4.465908e-01   p_cons 3.695652e-05   p_joint 4.429348e-04

Joint ci ratio: 1.374502e-01	ci left: 4.092507e-04	ci right 4.701688e-04	k: 812	n:1850000
Cons ci ratio: 4.719036e-01	ci left: 2.854317e-05	ci right 4.659772e-05	k: 68	n:1850000
KS ci ratio: 3.208183e-03	ci left: 4.458845e-01	ci right 4.473178e-01	k: 826212	n:1850000
ESYT2   1850000 perm   1595 sec   (1160 perm/sec)   p_kst 4.466011e-01   p_cons 3.675676e-05   p_joint 4.389189e-04

Joint ci ratio: 1.375350e-01	ci left: 4.065312e-04	ci right 4.670849e-04	k: 811	n:1860000
Cons ci ratio: 4.685207e-01	ci left: 2.886362e-05	ci right 4.694811e-05	k: 69	n:1860000
KS ci ratio: 3.199526e-03	ci left: 4.458897e-01	ci right 4.473191e-01	k: 830684	n:1860000
ESYT2   1860000 perm   1610 sec   (1155 perm/sec)   p_kst 4.466043e-01   p_cons 3.709677e-05   p_joint 4.360215e-04

Joint ci ratio: 1.401496e-01	ci left: 3.888714e-04	ci right 4.479878e-04	k: 781	n:1870000
Cons ci ratio: 4.685207e-01	ci left: 2.870926e-05	ci right 4.669705e-05	k: 69	n:1870000
KS ci ratio: 3.190666e-03	ci left: 4.459370e-01	ci right 4.473626e-01	k: 835235	n:1870000
ESYT2   1870000 perm   1626 sec   (1150 perm/sec)   p_kst 4.466497e-01   p_cons 3.689840e-05   p_joint 4.176471e-04

Joint ci ratio: 1.397925e-01	ci left: 3.888561e-04	ci right 4.478070e-04	k: 785	n:1880000
Cons ci ratio: 4.685208e-01	ci left: 2.855655e-05	ci right 4.644867e-05	k: 69	n:1880000
KS ci ratio: 3.182171e-03	ci left: 4.459386e-01	ci right 4.473605e-01	k: 839701	n:1880000
ESYT2   1880000 perm   1641 sec   (1145 perm/sec)   p_kst 4.466495e-01   p_cons 3.670213e-05   p_joint 4.175532e-04

Joint ci ratio: 1.399709e-01	ci left: 3.857775e-04	ci right 4.443425e-04	k: 783	n:1890000
Cons ci ratio: 4.685208e-01	ci left: 2.840546e-05	ci right 4.620291e-05	k: 69	n:1890000
KS ci ratio: 3.173940e-03	ci left: 4.459096e-01	ci right 4.473276e-01	k: 844109	n:1890000
ESYT2   1890000 perm   1657 sec   (1140 perm/sec)   p_kst 4.466185e-01   p_cons 3.650794e-05   p_joint 4.142857e-04

Joint ci ratio: 1.396152e-01	ci left: 3.857787e-04	ci right 4.441827e-04	k: 787	n:1900000
Cons ci ratio: 4.652096e-01	ci left: 2.872034e-05	ci right 4.654756e-05	k: 70	n:1900000
KS ci ratio: 3.165479e-03	ci left: 4.459266e-01	ci right 4.473409e-01	k: 848604	n:1900000
ESYT2   1900000 perm   1673 sec   (1136 perm/sec)   p_kst 4.466337e-01   p_cons 3.684211e-05   p_joint 4.142105e-04

Joint ci ratio: 1.386506e-01	ci left: 3.893177e-04	ci right 4.478166e-04	k: 798	n:1910000
Cons ci ratio: 4.652096e-01	ci left: 2.856997e-05	ci right 4.630385e-05	k: 70	n:1910000
KS ci ratio: 3.157056e-03	ci left: 4.459482e-01	ci right 4.473588e-01	k: 853108	n:1910000
ESYT2   1910000 perm   1689 sec   (1131 perm/sec)   p_kst 4.466534e-01   p_cons 3.664921e-05   p_joint 4.178010e-04

Joint ci ratio: 1.385640e-01	ci left: 3.877927e-04	ci right 4.460231e-04	k: 799	n:1920000
Cons ci ratio: 4.652097e-01	ci left: 2.842117e-05	ci right 4.606269e-05	k: 70	n:1920000
KS ci ratio: 3.148633e-03	ci left: 4.459799e-01	ci right 4.473869e-01	k: 857632	n:1920000
ESYT2   1920000 perm   1705 sec   (1126 perm/sec)   p_kst 4.466833e-01   p_cons 3.645833e-05   p_joint 4.161458e-04

Joint ci ratio: 1.390869e-01	ci left: 3.827825e-04	ci right 4.404955e-04	k: 793	n:1930000
Cons ci ratio: 4.652097e-01	ci left: 2.827391e-05	ci right 4.582402e-05	k: 70	n:1930000
KS ci ratio: 3.140531e-03	ci left: 4.459715e-01	ci right 4.473748e-01	k: 862079	n:1930000
ESYT2   1930000 perm   1721 sec   (1121 perm/sec)   p_kst 4.466731e-01   p_cons 3.626943e-05   p_joint 4.108808e-04

Joint ci ratio: 1.384778e-01	ci left: 3.842924e-04	ci right 4.419583e-04	k: 800	n:1940000
Cons ci ratio: 4.652098e-01	ci left: 2.812816e-05	ci right 4.558782e-05	k: 70	n:1940000
KS ci ratio: 3.132291e-03	ci left: 4.459946e-01	ci right 4.473942e-01	k: 866587	n:1940000
ESYT2   1940000 perm   1737 sec   (1117 perm/sec)   p_kst 4.466943e-01   p_cons 3.608247e-05   p_joint 4.123711e-04

Joint ci ratio: 1.393508e-01	ci left: 3.773716e-04	ci right 4.343856e-04	k: 790	n:1950000
Cons ci ratio: 4.619678e-01	ci left: 2.843682e-05	ci right 4.592637e-05	k: 71	n:1950000
KS ci ratio: 3.124168e-03	ci left: 4.460092e-01	ci right 4.474053e-01	k: 871079	n:1950000
ESYT2   1950000 perm   1753 sec   (1112 perm/sec)   p_kst 4.467072e-01   p_cons 3.641026e-05   p_joint 4.051282e-04

Joint ci ratio: 1.389125e-01	ci left: 3.779085e-04	ci right 4.348091e-04	k: 795	n:1960000
Cons ci ratio: 4.556820e-01	ci left: 2.919416e-05	ci right 4.682964e-05	k: 73	n:1960000
KS ci ratio: 3.116221e-03	ci left: 4.460059e-01	ci right 4.473984e-01	k: 875536	n:1960000
ESYT2   1960000 perm   1769 sec   (1108 perm/sec)   p_kst 4.467020e-01   p_cons 3.724490e-05   p_joint 4.056122e-04

Joint ci ratio: 1.393511e-01	ci left: 3.735404e-04	ci right 4.299757e-04	k: 790	n:1970000
Cons ci ratio: 4.556821e-01	ci left: 2.904597e-05	ci right 4.659193e-05	k: 73	n:1970000
KS ci ratio: 3.108334e-03	ci left: 4.460025e-01	ci right 4.473915e-01	k: 879993	n:1970000
ESYT2   1970000 perm   1785 sec   (1104 perm/sec)   p_kst 4.466970e-01   p_cons 3.705584e-05   p_joint 4.010152e-04

Joint ci ratio: 1.391754e-01	ci left: 3.726287e-04	ci right 4.288494e-04	k: 792	n:1980000
Cons ci ratio: 4.556821e-01	ci left: 2.889927e-05	ci right 4.635662e-05	k: 73	n:1980000
KS ci ratio: 3.100468e-03	ci left: 4.460053e-01	ci right 4.473908e-01	k: 884462	n:1980000
ESYT2   1980000 perm   1801 sec   (1099 perm/sec)   p_kst 4.466980e-01   p_cons 3.686869e-05   p_joint 4.000000e-04

Joint ci ratio: 1.405113e-01	ci left: 3.634821e-04	ci right 4.188933e-04	k: 777	n:1990000
Cons ci ratio: 4.526340e-01	ci left: 2.919906e-05	ci right 4.668331e-05	k: 74	n:1990000
KS ci ratio: 3.092967e-03	ci left: 4.459594e-01	ci right 4.473413e-01	k: 888834	n:1990000
ESYT2   1990000 perm   1818 sec   (1095 perm/sec)   p_kst 4.466503e-01   p_cons 3.718593e-05   p_joint 3.904523e-04

Joint ci ratio: 1.400619e-01	ci left: 3.640769e-04	ci right 4.193865e-04	k: 782	n:2000000
Cons ci ratio: 4.496462e-01	ci left: 2.949624e-05	ci right 4.700635e-05	k: 75	n:2000000
KS ci ratio: 3.085307e-03	ci left: 4.459478e-01	ci right 4.473263e-01	k: 893274	n:2000000
ESYT2   2000000 perm   1834 sec   (1090 perm/sec)   p_kst 4.466370e-01   p_cons 3.750000e-05   p_joint 3.910000e-04

Joint ci ratio: 1.397944e-01	ci left: 3.637059e-04	ci right 4.188448e-04	k: 785	n:2010000
Cons ci ratio: 4.496462e-01	ci left: 2.934949e-05	ci right 4.677249e-05	k: 75	n:2010000
KS ci ratio: 3.077667e-03	ci left: 4.459424e-01	ci right 4.473175e-01	k: 897726	n:2010000
ESYT2   2010000 perm   1850 sec   (1086 perm/sec)   p_kst 4.466299e-01   p_cons 3.731343e-05   p_joint 3.905473e-04

Joint ci ratio: 1.432071e-01	ci left: 3.442366e-04	ci right 3.978068e-04	k: 748	n:2020000
Cons ci ratio: 4.467168e-01	ci left: 2.964336e-05	ci right 4.709153e-05	k: 76	n:2020000
KS ci ratio: 3.069973e-03	ci left: 4.459548e-01	ci right 4.473265e-01	k: 902214	n:2020000
ESYT2   2020000 perm   1867 sec   (1082 perm/sec)   p_kst 4.466406e-01   p_cons 3.762376e-05   p_joint 3.702970e-04

Joint ci ratio: 1.433989e-01	ci left: 3.415910e-04	ci right 3.948267e-04	k: 746	n:2030000
Cons ci ratio: 4.467169e-01	ci left: 2.949733e-05	ci right 4.685955e-05	k: 76	n:2030000
KS ci ratio: 3.062593e-03	ci left: 4.459258e-01	ci right 4.472941e-01	k: 906618	n:2030000
ESYT2   2030000 perm   1883 sec   (1078 perm/sec)   p_kst 4.466099e-01   p_cons 3.743842e-05   p_joint 3.674877e-04

Joint ci ratio: 1.428263e-01	ci left: 3.427524e-04	ci right 3.959377e-04	k: 752	n:2040000
Cons ci ratio: 4.467169e-01	ci left: 2.935273e-05	ci right 4.662985e-05	k: 76	n:2040000
KS ci ratio: 3.055023e-03	ci left: 4.459363e-01	ci right 4.473012e-01	k: 911102	n:2040000
ESYT2   2040000 perm   1900 sec   (1074 perm/sec)   p_kst 4.466186e-01   p_cons 3.725490e-05   p_joint 3.686275e-04

Joint ci ratio: 1.434952e-01	ci left: 3.377880e-04	ci right 3.904695e-04	k: 745	n:2050000
Cons ci ratio: 4.438440e-01	ci left: 2.964264e-05	ci right 4.694455e-05	k: 77	n:2050000
KS ci ratio: 3.047494e-03	ci left: 4.459490e-01	ci right 4.473106e-01	k: 915591	n:2050000
ESYT2   2050000 perm   1917 sec   (1069 perm/sec)   p_kst 4.466298e-01   p_cons 3.756098e-05   p_joint 3.634146e-04

Joint ci ratio: 1.446640e-01	ci left: 3.305329e-04	ci right 3.825390e-04	k: 733	n:2060000
Cons ci ratio: 4.438441e-01	ci left: 2.949875e-05	ci right 4.671667e-05	k: 77	n:2060000
KS ci ratio: 3.039865e-03	ci left: 4.459870e-01	ci right 4.473452e-01	k: 920132	n:2060000
ESYT2   2060000 perm   1934 sec   (1065 perm/sec)   p_kst 4.466660e-01   p_cons 3.737864e-05   p_joint 3.558252e-04

Joint ci ratio: 1.444674e-01	ci left: 3.298674e-04	ci right 3.816921e-04	k: 735	n:2070000
Cons ci ratio: 4.438441e-01	ci left: 2.935624e-05	ci right 4.649099e-05	k: 77	n:2070000
KS ci ratio: 3.032527e-03	ci left: 4.459864e-01	ci right 4.473413e-01	k: 924594	n:2070000
ESYT2   2070000 perm   1951 sec   (1061 perm/sec)   p_kst 4.466638e-01   p_cons 3.719807e-05   p_joint 3.550725e-04

Joint ci ratio: 1.459631e-01	ci left: 3.213319e-04	ci right 3.723838e-04	k: 720	n:2080000
Cons ci ratio: 4.438442e-01	ci left: 2.921510e-05	ci right 4.626747e-05	k: 77	n:2080000
KS ci ratio: 3.025216e-03	ci left: 4.459901e-01	ci right 4.473418e-01	k: 929065	n:2080000
ESYT2   2080000 perm   1968 sec   (1057 perm/sec)   p_kst 4.466659e-01   p_cons 3.701923e-05   p_joint 3.461538e-04

Joint ci ratio: 1.454595e-01	ci left: 3.220995e-04	ci right 3.730816e-04	k: 725	n:2090000
Cons ci ratio: 4.438442e-01	ci left: 2.907532e-05	ci right 4.604610e-05	k: 77	n:2090000
KS ci ratio: 3.017858e-03	ci left: 4.460100e-01	ci right 4.473585e-01	k: 933570	n:2090000
ESYT2   2090000 perm   1985 sec   (1053 perm/sec)   p_kst 4.466842e-01   p_cons 3.684211e-05   p_joint 3.468900e-04

Joint ci ratio: 1.449612e-01	ci left: 3.228602e-04	ci right 3.737724e-04	k: 730	n:2100000
Cons ci ratio: 4.438442e-01	ci left: 2.893686e-05	ci right 4.582683e-05	k: 77	n:2100000
KS ci ratio: 3.010539e-03	ci left: 4.460322e-01	ci right 4.473775e-01	k: 938080	n:2100000
ESYT2   2100000 perm   2002 sec   (1049 perm/sec)   p_kst 4.467048e-01   p_cons 3.666667e-05   p_joint 3.476190e-04

Joint ci ratio: 1.449613e-01	ci left: 3.213300e-04	ci right 3.720010e-04	k: 730	n:2110000
Cons ci ratio: 4.355471e-01	ci left: 3.006410e-05	ci right 4.718790e-05	k: 80	n:2110000
KS ci ratio: 3.003428e-03	ci left: 4.460286e-01	ci right 4.473706e-01	k: 942536	n:2110000
ESYT2   2110000 perm   2020 sec   (1045 perm/sec)   p_kst 4.466995e-01   p_cons 3.791469e-05   p_joint 3.459716e-04

Joint ci ratio: 1.454599e-01	ci left: 3.175414e-04	ci right 3.678022e-04	k: 725	n:2120000
Cons ci ratio: 4.355471e-01	ci left: 2.992229e-05	ci right 4.696531e-05	k: 80	n:2120000
KS ci ratio: 2.996454e-03	ci left: 4.460108e-01	ci right 4.473497e-01	k: 946962	n:2120000
ESYT2   2120000 perm   2037 sec   (1041 perm/sec)   p_kst 4.466802e-01   p_cons 3.773585e-05   p_joint 3.419811e-04

Joint ci ratio: 1.448624e-01	ci left: 3.187653e-04	ci right 3.689945e-04	k: 731	n:2130000
Cons ci ratio: 4.328831e-01	ci left: 3.019997e-05	ci right 4.726532e-05	k: 81	n:2130000
KS ci ratio: 2.989459e-03	ci left: 4.460045e-01	ci right 4.473402e-01	k: 951412	n:2130000
ESYT2   2130000 perm   2054 sec   (1037 perm/sec)   p_kst 4.466723e-01   p_cons 3.802817e-05   p_joint 3.431925e-04

Joint ci ratio: 1.447637e-01	ci left: 3.177260e-04	ci right 3.677545e-04	k: 732	n:2140000
Cons ci ratio: 4.302675e-01	ci left: 3.047536e-05	ci right 4.756222e-05	k: 82	n:2140000
KS ci ratio: 2.982544e-03	ci left: 4.459931e-01	ci right 4.473257e-01	k: 955851	n:2140000
ESYT2   2140000 perm   2072 sec   (1033 perm/sec)   p_kst 4.466593e-01   p_cons 3.831776e-05   p_joint 3.420561e-04

Joint ci ratio: 1.443703e-01	ci left: 3.180414e-04	ci right 3.679717e-04	k: 736	n:2150000
Cons ci ratio: 4.276986e-01	ci left: 3.074850e-05	ci right 4.785605e-05	k: 83	n:2150000
KS ci ratio: 2.975697e-03	ci left: 4.459786e-01	ci right 4.473081e-01	k: 960283	n:2150000
ESYT2   2150000 perm   2089 sec   (1029 perm/sec)   p_kst 4.466433e-01   p_cons 3.860465e-05   p_joint 3.423256e-04

Joint ci ratio: 1.440773e-01	ci left: 3.179078e-04	ci right 3.677071e-04	k: 739	n:2160000
Cons ci ratio: 4.251752e-01	ci left: 3.101942e-05	ci right 4.814687e-05	k: 84	n:2160000
KS ci ratio: 2.969094e-03	ci left: 4.459313e-01	ci right 4.472577e-01	k: 964644	n:2160000
ESYT2   2160000 perm   2107 sec   (1025 perm/sec)   p_kst 4.465944e-01   p_cons 3.888889e-05   p_joint 3.421296e-04

Joint ci ratio: 1.434006e-01	ci left: 3.195526e-04	ci right 3.693543e-04	k: 746	n:2170000
Cons ci ratio: 4.251753e-01	ci left: 3.087647e-05	ci right 4.792499e-05	k: 84	n:2170000
KS ci ratio: 2.962245e-03	ci left: 4.459329e-01	ci right 4.472562e-01	k: 969110	n:2170000
ESYT2   2170000 perm   2124 sec   (1022 perm/sec)   p_kst 4.465945e-01   p_cons 3.870968e-05   p_joint 3.437788e-04

Joint ci ratio: 1.440776e-01	ci left: 3.149912e-04	ci right 3.643337e-04	k: 739	n:2180000
Cons ci ratio: 4.251753e-01	ci left: 3.073483e-05	ci right 4.770516e-05	k: 84	n:2180000
KS ci ratio: 2.955429e-03	ci left: 4.459367e-01	ci right 4.472570e-01	k: 973581	n:2180000
ESYT2   2180000 perm   2142 sec   (1018 perm/sec)   p_kst 4.465968e-01   p_cons 3.853211e-05   p_joint 3.389908e-04

Joint ci ratio: 1.432092e-01	ci left: 3.175148e-04	ci right 3.669272e-04	k: 748	n:2190000
Cons ci ratio: 4.226961e-01	ci left: 3.100239e-05	ci right 4.799239e-05	k: 85	n:2190000
KS ci ratio: 2.948709e-03	ci left: 4.459323e-01	ci right 4.472496e-01	k: 978034	n:2190000
ESYT2   2190000 perm   2160 sec   (1014 perm/sec)   p_kst 4.465909e-01   p_cons 3.881279e-05   p_joint 3.415525e-04

Joint ci ratio: 1.430184e-01	ci left: 3.169481e-04	ci right 3.662010e-04	k: 750	n:2200000
Cons ci ratio: 4.226961e-01	ci left: 3.086147e-05	ci right 4.777424e-05	k: 85	n:2200000
KS ci ratio: 2.942067e-03	ci left: 4.459225e-01	ci right 4.472368e-01	k: 982475	n:2200000
ESYT2   2200000 perm   2178 sec   (1010 perm/sec)   p_kst 4.465795e-01   p_cons 3.863636e-05   p_joint 3.409091e-04

Joint ci ratio: 1.427336e-01	ci left: 3.168228e-04	ci right 3.659499e-04	k: 753	n:2210000
Cons ci ratio: 4.226962e-01	ci left: 3.072182e-05	ci right 4.755807e-05	k: 85	n:2210000
KS ci ratio: 2.935440e-03	ci left: 4.459177e-01	ci right 4.472290e-01	k: 986927	n:2210000
ESYT2   2210000 perm   2196 sec   (1006 perm/sec)   p_kst 4.465733e-01   p_cons 3.846154e-05   p_joint 3.407240e-04

Joint ci ratio: 1.424505e-01	ci left: 3.166988e-04	ci right 3.657010e-04	k: 756	n:2220000
Cons ci ratio: 4.202598e-01	ci left: 3.098610e-05	ci right 4.784181e-05	k: 86	n:2220000
KS ci ratio: 2.929021e-03	ci left: 4.458855e-01	ci right 4.471939e-01	k: 991318	n:2220000
ESYT2   2220000 perm   2214 sec   (1002 perm/sec)   p_kst 4.465396e-01   p_cons 3.873874e-05   p_joint 3.405405e-04

Joint ci ratio: 1.432096e-01	ci left: 3.118194e-04	ci right 3.603456e-04	k: 748	n:2230000
Cons ci ratio: 4.202598e-01	ci left: 3.084715e-05	ci right 4.762727e-05	k: 86	n:2230000
KS ci ratio: 2.922474e-03	ci left: 4.458823e-01	ci right 4.471878e-01	k: 995773	n:2230000
ESYT2   2230000 perm   2233 sec   (999 perm/sec)   p_kst 4.465350e-01   p_cons 3.856502e-05   p_joint 3.354260e-04

Joint ci ratio: 1.438839e-01	ci left: 3.074145e-04	ci right 3.554999e-04	k: 741	n:2240000
Cons ci ratio: 4.178651e-01	ci left: 3.110879e-05	ci right 4.790790e-05	k: 87	n:2240000
KS ci ratio: 2.915994e-03	ci left: 4.458752e-01	ci right 4.471777e-01	k: 1000219	n:2240000
ESYT2   2240000 perm   2251 sec   (995 perm/sec)   p_kst 4.465263e-01   p_cons 3.883929e-05   p_joint 3.308036e-04

Joint ci ratio: 1.434015e-01	ci left: 3.081906e-04	ci right 3.562219e-04	k: 746	n:2250000
Cons ci ratio: 4.155109e-01	ci left: 3.136837e-05	ci right 4.818576e-05	k: 88	n:2250000
KS ci ratio: 2.909623e-03	ci left: 4.458569e-01	ci right 4.471565e-01	k: 1004640	n:2250000
ESYT2   2250000 perm   2269 sec   (992 perm/sec)   p_kst 4.465067e-01   p_cons 3.911111e-05   p_joint 3.315556e-04

Joint ci ratio: 1.432099e-01	ci left: 3.076801e-04	ci right 3.555624e-04	k: 748	n:2260000
Cons ci ratio: 4.155109e-01	ci left: 3.122957e-05	ci right 4.797255e-05	k: 88	n:2260000
KS ci ratio: 2.903114e-03	ci left: 4.458694e-01	ci right 4.471661e-01	k: 1009130	n:2260000
ESYT2   2260000 perm   2287 sec   (988 perm/sec)   p_kst 4.465177e-01   p_cons 3.893805e-05   p_joint 3.309735e-04

Joint ci ratio: 1.435941e-01	ci left: 3.046258e-04	ci right 3.521708e-04	k: 744	n:2270000
Cons ci ratio: 4.155109e-01	ci left: 3.109199e-05	ci right 4.776122e-05	k: 88	n:2270000
KS ci ratio: 2.896573e-03	ci left: 4.458945e-01	ci right 4.471884e-01	k: 1013649	n:2270000
ESYT2   2270000 perm   2306 sec   (985 perm/sec)   p_kst 4.465414e-01   p_cons 3.876652e-05   p_joint 3.277533e-04

Joint ci ratio: 1.433059e-01	ci left: 3.045583e-04	ci right 3.519891e-04	k: 747	n:2280000
Cons ci ratio: 4.155110e-01	ci left: 3.095563e-05	ci right 4.755174e-05	k: 88	n:2280000
KS ci ratio: 2.890377e-03	ci left: 4.458682e-01	ci right 4.471592e-01	k: 1018051	n:2280000
ESYT2   2280000 perm   2324 sec   (981 perm/sec)   p_kst 4.465136e-01   p_cons 3.859649e-05   p_joint 3.276316e-04

Joint ci ratio: 1.430193e-01	ci left: 3.044914e-04	ci right 3.518090e-04	k: 750	n:2290000
Cons ci ratio: 4.131961e-01	ci left: 3.121160e-05	ci right 4.782606e-05	k: 89	n:2290000
KS ci ratio: 2.884108e-03	ci left: 4.458612e-01	ci right 4.471494e-01	k: 1022497	n:2290000
ESYT2   2290000 perm   2342 sec   (978 perm/sec)   p_kst 4.465052e-01   p_cons 3.886463e-05   p_joint 3.275109e-04

Joint ci ratio: 1.427345e-01	ci left: 3.044253e-04	ci right 3.516303e-04	k: 753	n:2300000
Cons ci ratio: 4.131961e-01	ci left: 3.107590e-05	ci right 4.761812e-05	k: 89	n:2300000
KS ci ratio: 2.878107e-03	ci left: 4.458152e-01	ci right 4.471006e-01	k: 1026853	n:2300000
ESYT2   2300000 perm   2361 sec   (974 perm/sec)   p_kst 4.464578e-01   p_cons 3.869565e-05   p_joint 3.273913e-04

Joint ci ratio: 1.444701e-01	ci left: 2.955951e-04	ci right 3.420363e-04	k: 735	n:2310000
Cons ci ratio: 4.131961e-01	ci left: 3.094137e-05	ci right 4.741198e-05	k: 89	n:2310000
KS ci ratio: 2.872043e-03	ci left: 4.457869e-01	ci right 4.470695e-01	k: 1031249	n:2310000
ESYT2   2310000 perm   2379 sec   (971 perm/sec)   p_kst 4.464281e-01   p_cons 3.852814e-05   p_joint 3.181818e-04

Joint ci ratio: 1.440791e-01	ci left: 2.959829e-04	ci right 3.423483e-04	k: 739	n:2320000
Cons ci ratio: 4.109195e-01	ci left: 3.119435e-05	ci right 4.768310e-05	k: 90	n:2320000
KS ci ratio: 2.866087e-03	ci left: 4.457468e-01	ci right 4.470266e-01	k: 1035617	n:2320000
ESYT2   2320000 perm   2398 sec   (968 perm/sec)   p_kst 4.463866e-01   p_cons 3.879310e-05   p_joint 3.185345e-04

Joint ci ratio: 1.436912e-01	ci left: 2.963675e-04	ci right 3.426575e-04	k: 743	n:2330000
Cons ci ratio: 4.109195e-01	ci left: 3.106047e-05	ci right 4.747845e-05	k: 90	n:2330000
KS ci ratio: 2.859826e-03	ci left: 4.457663e-01	ci right 4.470433e-01	k: 1040123	n:2330000
ESYT2   2330000 perm   2417 sec   (964 perm/sec)   p_kst 4.464047e-01   p_cons 3.862661e-05   p_joint 3.188841e-04

Joint ci ratio: 1.431152e-01	ci left: 2.975731e-04	ci right 3.438492e-04	k: 749	n:2340000
Cons ci ratio: 4.109196e-01	ci left: 3.092773e-05	ci right 4.727555e-05	k: 90	n:2340000
KS ci ratio: 2.853869e-03	ci left: 4.457398e-01	ci right 4.470141e-01	k: 1044522	n:2340000
ESYT2   2340000 perm   2436 sec   (961 perm/sec)   p_kst 4.463769e-01   p_cons 3.846154e-05   p_joint 3.200855e-04

Joint ci ratio: 1.429248e-01	ci left: 2.971274e-04	ci right 3.432675e-04	k: 751	n:2350000
Cons ci ratio: 4.086802e-01	ci left: 3.117778e-05	ci right 4.754355e-05	k: 91	n:2350000
KS ci ratio: 2.847908e-03	ci left: 4.457209e-01	ci right 4.469925e-01	k: 1048938	n:2350000
ESYT2   2350000 perm   2455 sec   (957 perm/sec)   p_kst 4.463566e-01   p_cons 3.872340e-05   p_joint 3.195745e-04

Joint ci ratio: 1.429249e-01	ci left: 2.958684e-04	ci right 3.418130e-04	k: 751	n:2360000
Cons ci ratio: 4.086802e-01	ci left: 3.104567e-05	ci right 4.734210e-05	k: 91	n:2360000
KS ci ratio: 2.841733e-03	ci left: 4.457457e-01	ci right 4.470146e-01	k: 1053457	n:2360000
ESYT2   2360000 perm   2474 sec   (954 perm/sec)   p_kst 4.463801e-01   p_cons 3.855932e-05   p_joint 3.182203e-04

Joint ci ratio: 1.427352e-01	ci left: 2.954337e-04	ci right 3.412447e-04	k: 753	n:2370000
Cons ci ratio: 4.086802e-01	ci left: 3.091468e-05	ci right 4.714234e-05	k: 91	n:2370000
KS ci ratio: 2.835622e-03	ci left: 4.457661e-01	ci right 4.470323e-01	k: 1057966	n:2370000
ESYT2   2370000 perm   2493 sec   (951 perm/sec)   p_kst 4.463992e-01   p_cons 3.839662e-05   p_joint 3.177215e-04

Joint ci ratio: 1.426407e-01	ci left: 2.945976e-04	ci right 3.402461e-04	k: 754	n:2380000
Cons ci ratio: 4.086803e-01	ci left: 3.078478e-05	ci right 4.694426e-05	k: 91	n:2380000
KS ci ratio: 2.829660e-03	ci left: 4.457670e-01	ci right 4.470306e-01	k: 1062429	n:2380000
ESYT2   2380000 perm   2512 sec   (947 perm/sec)   p_kst 4.463987e-01   p_cons 3.823529e-05   p_joint 3.168067e-04

Joint ci ratio: 1.425464e-01	ci left: 2.937684e-04	ci right 3.392558e-04	k: 755	n:2390000
Cons ci ratio: 4.086803e-01	ci left: 3.065597e-05	ci right 4.674785e-05	k: 91	n:2390000
KS ci ratio: 2.823718e-03	ci left: 4.457713e-01	ci right 4.470322e-01	k: 1066900	n:2390000
ESYT2   2390000 perm   2532 sec   (944 perm/sec)   p_kst 4.464017e-01   p_cons 3.807531e-05   p_joint 3.158996e-04

Joint ci ratio: 1.420773e-01	ci left: 2.945535e-04	ci right 3.399997e-04	k: 760	n:2400000
Cons ci ratio: 4.086803e-01	ci left: 3.052824e-05	ci right 4.655306e-05	k: 91	n:2400000
KS ci ratio: 2.817841e-03	ci left: 4.457705e-01	ci right 4.470288e-01	k: 1071359	n:2400000
ESYT2   2400000 perm   2551 sec   (941 perm/sec)   p_kst 4.463996e-01   p_cons 3.791667e-05   p_joint 3.166667e-04

Joint ci ratio: 1.417054e-01	ci left: 2.949322e-04	ci right 3.403076e-04	k: 764	n:2410000
Cons ci ratio: 4.064771e-01	ci left: 3.077396e-05	ci right 4.681716e-05	k: 92	n:2410000
KS ci ratio: 2.812088e-03	ci left: 4.457544e-01	ci right 4.470101e-01	k: 1075781	n:2410000
ESYT2   2410000 perm   2570 sec   (938 perm/sec)   p_kst 4.463822e-01   p_cons 3.817427e-05   p_joint 3.170124e-04

Joint ci ratio: 1.414283e-01	ci left: 2.949092e-04	ci right 3.401849e-04	k: 767	n:2420000
Cons ci ratio: 4.043092e-01	ci left: 3.101788e-05	ci right 4.707884e-05	k: 93	n:2420000
KS ci ratio: 2.806349e-03	ci left: 4.457421e-01	ci right 4.469952e-01	k: 1080212	n:2420000
ESYT2   2420000 perm   2590 sec   (934 perm/sec)   p_kst 4.463686e-01   p_cons 3.842975e-05   p_joint 3.169421e-04

Joint ci ratio: 1.411529e-01	ci left: 2.948865e-04	ci right 3.400631e-04	k: 770	n:2430000
Cons ci ratio: 4.021756e-01	ci left: 3.126001e-05	ci right 4.733815e-05	k: 94	n:2430000
KS ci ratio: 2.800498e-03	ci left: 4.457559e-01	ci right 4.470064e-01	k: 1084706	n:2430000
ESYT2   2430000 perm   2609 sec   (931 perm/sec)   p_kst 4.463811e-01   p_cons 3.868313e-05   p_joint 3.168724e-04

Joint ci ratio: 1.431161e-01	ci left: 2.853773e-04	ci right 3.297571e-04	k: 749	n:2440000
Cons ci ratio: 4.000754e-01	ci left: 3.150039e-05	ci right 4.759511e-05	k: 95	n:2440000
KS ci ratio: 2.794685e-03	ci left: 4.457691e-01	ci right 4.470171e-01	k: 1089199	n:2440000
ESYT2   2440000 perm   2628 sec   (928 perm/sec)   p_kst 4.463930e-01   p_cons 3.893443e-05   p_joint 3.069672e-04

Joint ci ratio: 1.426414e-01	ci left: 2.861804e-04	ci right 3.305249e-04	k: 754	n:2450000
Cons ci ratio: 3.959718e-01	ci left: 3.210643e-05	ci right 4.829847e-05	k: 97	n:2450000
KS ci ratio: 2.789045e-03	ci left: 4.457582e-01	ci right 4.470036e-01	k: 1093633	n:2450000
ESYT2   2450000 perm   2648 sec   (925 perm/sec)   p_kst 4.463808e-01   p_cons 3.959184e-05   p_joint 3.077551e-04

Joint ci ratio: 1.424529e-01	ci left: 2.858011e-04	ci right 3.300233e-04	k: 756	n:2460000
Cons ci ratio: 3.959718e-01	ci left: 3.197591e-05	ci right 4.810214e-05	k: 97	n:2460000
KS ci ratio: 2.783304e-03	ci left: 4.457713e-01	ci right 4.470142e-01	k: 1098126	n:2460000
ESYT2   2460000 perm   2668 sec   (922 perm/sec)   p_kst 4.463927e-01   p_cons 3.943089e-05   p_joint 3.073171e-04

Joint ci ratio: 1.424530e-01	ci left: 2.846440e-04	ci right 3.286872e-04	k: 756	n:2470000
Cons ci ratio: 3.959719e-01	ci left: 3.184645e-05	ci right 4.790739e-05	k: 97	n:2470000
KS ci ratio: 2.777736e-03	ci left: 4.457597e-01	ci right 4.470000e-01	k: 1102558	n:2470000
ESYT2   2470000 perm   2688 sec   (919 perm/sec)   p_kst 4.463798e-01   p_cons 3.927126e-05   p_joint 3.060729e-04

Joint ci ratio: 1.448660e-01	ci left: 2.737778e-04	ci right 3.169193e-04	k: 731	n:2480000
Cons ci ratio: 3.959719e-01	ci left: 3.171804e-05	ci right 4.771422e-05	k: 97	n:2480000
KS ci ratio: 2.772053e-03	ci left: 4.457747e-01	ci right 4.470125e-01	k: 1107056	n:2480000
ESYT2   2480000 perm   2707 sec   (916 perm/sec)   p_kst 4.463935e-01   p_cons 3.911290e-05   p_joint 2.947581e-04

Joint ci ratio: 1.445700e-01	ci left: 2.738394e-04	ci right 3.168949e-04	k: 734	n:2490000
Cons ci ratio: 3.959719e-01	ci left: 3.159066e-05	ci right 4.752260e-05	k: 97	n:2490000
KS ci ratio: 2.766602e-03	ci left: 4.457543e-01	ci right 4.469896e-01	k: 1111466	n:2490000
ESYT2   2490000 perm   2727 sec   (913 perm/sec)   p_kst 4.463719e-01   p_cons 3.895582e-05   p_joint 2.947791e-04

Joint ci ratio: 1.444718e-01	ci left: 2.731296e-04	ci right 3.160418e-04	k: 735	n:2500000
Cons ci ratio: 3.959720e-01	ci left: 3.146430e-05	ci right 4.733251e-05	k: 97	n:2500000
KS ci ratio: 2.761210e-03	ci left: 4.457292e-01	ci right 4.469621e-01	k: 1115864	n:2500000
ESYT2   2500000 perm   2747 sec   (910 perm/sec)   p_kst 4.463456e-01   p_cons 3.880000e-05   p_joint 2.940000e-04

Joint ci ratio: 1.442760e-01	ci left: 2.728095e-04	ci right 3.156083e-04	k: 737	n:2510000
Cons ci ratio: 3.959720e-01	ci left: 3.133894e-05	ci right 4.714393e-05	k: 97	n:2510000
KS ci ratio: 2.755650e-03	ci left: 4.457403e-01	ci right 4.469706e-01	k: 1120352	n:2510000
ESYT2   2510000 perm   2768 sec   (907 perm/sec)   p_kst 4.463554e-01   p_cons 3.864542e-05   p_joint 2.936255e-04

Joint ci ratio: 1.436929e-01	ci left: 2.740221e-04	ci right 3.168225e-04	k: 743	n:2520000
Cons ci ratio: 3.919921e-01	ci left: 3.192960e-05	ci right 4.782874e-05	k: 99	n:2520000
KS ci ratio: 2.750207e-03	ci left: 4.457361e-01	ci right 4.469640e-01	k: 1124802	n:2520000
ESYT2   2520000 perm   2788 sec   (904 perm/sec)   p_kst 4.463500e-01   p_cons 3.928571e-05   p_joint 2.948413e-04

Joint ci ratio: 1.435002e-01	ci left: 2.737011e-04	ci right 3.163891e-04	k: 745	n:2530000
Cons ci ratio: 3.919922e-01	ci left: 3.180340e-05	ci right 4.763970e-05	k: 99	n:2530000
KS ci ratio: 2.744840e-03	ci left: 4.457241e-01	ci right 4.469496e-01	k: 1129232	n:2530000
ESYT2   2530000 perm   2808 sec   (901 perm/sec)   p_kst 4.463368e-01   p_cons 3.913043e-05   p_joint 2.944664e-04

Joint ci ratio: 1.433083e-01	ci left: 2.733827e-04	ci right 3.159591e-04	k: 747	n:2540000
Cons ci ratio: 3.919922e-01	ci left: 3.167819e-05	ci right 4.745214e-05	k: 99	n:2540000
KS ci ratio: 2.739358e-03	ci left: 4.457385e-01	ci right 4.469616e-01	k: 1133729	n:2540000
ESYT2   2540000 perm   2829 sec   (898 perm/sec)   p_kst 4.463500e-01   p_cons 3.897638e-05   p_joint 2.940945e-04

Joint ci ratio: 1.430217e-01	ci left: 2.734449e-04	ci right 3.159387e-04	k: 750	n:2550000
Cons ci ratio: 3.919922e-01	ci left: 3.155396e-05	ci right 4.726605e-05	k: 99	n:2550000
KS ci ratio: 2.733800e-03	ci left: 4.457725e-01	ci right 4.469932e-01	k: 1138276	n:2550000
ESYT2   2550000 perm   2849 sec   (895 perm/sec)   p_kst 4.463827e-01   p_cons 3.882353e-05   p_joint 2.941176e-04

Joint ci ratio: 1.427369e-01	ci left: 2.735068e-04	ci right 3.159183e-04	k: 753	n:2560000
Cons ci ratio: 3.919923e-01	ci left: 3.143070e-05	ci right 4.708142e-05	k: 99	n:2560000
KS ci ratio: 2.728574e-03	ci left: 4.457522e-01	ci right 4.469705e-01	k: 1142685	n:2560000
ESYT2   2560000 perm   2870 sec   (892 perm/sec)   p_kst 4.463613e-01   p_cons 3.867188e-05   p_joint 2.941406e-04

Joint ci ratio: 1.424538e-01	ci left: 2.735682e-04	ci right 3.158979e-04	k: 756	n:2570000
Cons ci ratio: 3.900468e-01	ci left: 3.165925e-05	ci right 4.732540e-05	k: 100	n:2570000
KS ci ratio: 2.723114e-03	ci left: 4.457800e-01	ci right 4.469960e-01	k: 1147217	n:2570000
ESYT2   2570000 perm   2890 sec   (889 perm/sec)   p_kst 4.463879e-01   p_cons 3.891051e-05   p_joint 2.941634e-04

Joint ci ratio: 1.421724e-01	ci left: 2.736293e-04	ci right 3.158777e-04	k: 759	n:2580000
Cons ci ratio: 3.900469e-01	ci left: 3.153654e-05	ci right 4.714197e-05	k: 100	n:2580000
KS ci ratio: 2.717818e-03	ci left: 4.457836e-01	ci right 4.469972e-01	k: 1151687	n:2580000
ESYT2   2580000 perm   2911 sec   (886 perm/sec)   p_kst 4.463903e-01   p_cons 3.875969e-05   p_joint 2.941860e-04

Joint ci ratio: 1.425482e-01	ci left: 2.710834e-04	ci right 3.130588e-04	k: 755	n:2590000
Cons ci ratio: 3.862413e-01	ci left: 3.211162e-05	ci right 4.780715e-05	k: 102	n:2590000
KS ci ratio: 2.712585e-03	ci left: 4.457813e-01	ci right 4.469925e-01	k: 1156142	n:2590000
ESYT2   2590000 perm   2932 sec   (883 perm/sec)   p_kst 4.463869e-01   p_cons 3.938224e-05   p_joint 2.915058e-04

Joint ci ratio: 1.419858e-01	ci left: 2.722663e-04	ci right 3.142444e-04	k: 761	n:2600000
Cons ci ratio: 3.862414e-01	ci left: 3.198811e-05	ci right 4.762328e-05	k: 102	n:2600000
KS ci ratio: 2.707351e-03	ci left: 4.457848e-01	ci right 4.469937e-01	k: 1160612	n:2600000
ESYT2   2600000 perm   2952 sec   (881 perm/sec)   p_kst 4.463892e-01   p_cons 3.923077e-05   p_joint 2.926923e-04

Joint ci ratio: 1.416145e-01	ci left: 2.727013e-04	ci right 3.146273e-04	k: 765	n:2610000
Cons ci ratio: 3.843799e-01	ci left: 3.221158e-05	ci right 4.786089e-05	k: 103	n:2610000
KS ci ratio: 2.702354e-03	ci left: 4.457504e-01	ci right 4.469570e-01	k: 1164983	n:2610000
ESYT2   2610000 perm   2973 sec   (878 perm/sec)   p_kst 4.463536e-01   p_cons 3.946360e-05   p_joint 2.931034e-04

Joint ci ratio: 1.414301e-01	ci left: 2.723968e-04	ci right 3.142168e-04	k: 767	n:2620000
Cons ci ratio: 3.843799e-01	ci left: 3.208864e-05	ci right 4.767822e-05	k: 103	n:2620000
KS ci ratio: 2.697334e-03	ci left: 4.457254e-01	ci right 4.469297e-01	k: 1169378	n:2620000
ESYT2   2620000 perm   2993 sec   (875 perm/sec)   p_kst 4.463275e-01   p_cons 3.931298e-05   p_joint 2.927481e-04

Joint ci ratio: 1.411546e-01	ci left: 2.724614e-04	ci right 3.142031e-04	k: 770	n:2630000
Cons ci ratio: 3.807363e-01	ci left: 3.265395e-05	ci right 4.833018e-05	k: 105	n:2630000
KS ci ratio: 2.691985e-03	ci left: 4.457664e-01	ci right 4.469683e-01	k: 1173946	n:2630000
ESYT2   2630000 perm   3015 sec   (872 perm/sec)   p_kst 4.463673e-01   p_cons 3.992395e-05   p_joint 2.927757e-04

Joint ci ratio: 1.416148e-01	ci left: 2.696024e-04	ci right 3.110521e-04	k: 765	n:2640000
Cons ci ratio: 3.807363e-01	ci left: 3.253026e-05	ci right 4.814711e-05	k: 105	n:2640000
KS ci ratio: 2.686838e-03	ci left: 4.457756e-01	ci right 4.469753e-01	k: 1178431	n:2640000
ESYT2   2640000 perm   3035 sec   (870 perm/sec)   p_kst 4.463754e-01   p_cons 3.977273e-05   p_joint 2.897727e-04

Joint ci ratio: 1.414303e-01	ci left: 2.693130e-04	ci right 3.106597e-04	k: 767	n:2650000
Cons ci ratio: 3.807364e-01	ci left: 3.240751e-05	ci right 4.796542e-05	k: 105	n:2650000
KS ci ratio: 2.681742e-03	ci left: 4.457806e-01	ci right 4.469780e-01	k: 1182905	n:2650000
ESYT2   2650000 perm   3056 sec   (867 perm/sec)   p_kst 4.463792e-01   p_cons 3.962264e-05   p_joint 2.894340e-04

Joint ci ratio: 1.409721e-01	ci left: 2.701139e-04	ci right 3.114379e-04	k: 772	n:2660000
Cons ci ratio: 3.789530e-01	ci left: 3.262572e-05	ci right 4.819677e-05	k: 106	n:2660000
KS ci ratio: 2.676798e-03	ci left: 4.457630e-01	ci right 4.469582e-01	k: 1187319	n:2660000
ESYT2   2660000 perm   3078 sec   (864 perm/sec)   p_kst 4.463605e-01   p_cons 3.984962e-05   p_joint 2.902256e-04

Joint ci ratio: 1.406993e-01	ci left: 2.701862e-04	ci right 3.114346e-04	k: 775	n:2670000
Cons ci ratio: 3.789530e-01	ci left: 3.250352e-05	ci right 4.801626e-05	k: 106	n:2670000
KS ci ratio: 2.671745e-03	ci left: 4.457706e-01	ci right 4.469636e-01	k: 1191800	n:2670000
ESYT2   2670000 perm   3099 sec   (862 perm/sec)   p_kst 4.463670e-01   p_cons 3.970037e-05   p_joint 2.902622e-04

Joint ci ratio: 1.404281e-01	ci left: 2.702581e-04	ci right 3.114313e-04	k: 778	n:2680000
Cons ci ratio: 3.789531e-01	ci left: 3.238224e-05	ci right 4.783710e-05	k: 106	n:2680000
KS ci ratio: 2.666822e-03	ci left: 4.457596e-01	ci right 4.469503e-01	k: 1196231	n:2680000
ESYT2   2680000 perm   3120 sec   (859 perm/sec)   p_kst 4.463549e-01   p_cons 3.955224e-05   p_joint 2.902985e-04

Joint ci ratio: 1.401585e-01	ci left: 2.703295e-04	ci right 3.114279e-04	k: 781	n:2690000
Cons ci ratio: 3.789531e-01	ci left: 3.226186e-05	ci right 4.765926e-05	k: 106	n:2690000
KS ci ratio: 2.661968e-03	ci left: 4.457408e-01	ci right 4.469292e-01	k: 1200641	n:2690000
ESYT2   2690000 perm   3142 sec   (856 perm/sec)   p_kst 4.463349e-01   p_cons 3.940520e-05   p_joint 2.903346e-04

Joint ci ratio: 1.398014e-01	ci left: 2.707579e-04	ci right 3.118078e-04	k: 785	n:2700000
Cons ci ratio: 3.771946e-01	ci left: 3.247755e-05	ci right 4.788815e-05	k: 107	n:2700000
KS ci ratio: 2.656958e-03	ci left: 4.457558e-01	ci right 4.469421e-01	k: 1205142	n:2700000
ESYT2   2700000 perm   3163 sec   (854 perm/sec)   p_kst 4.463489e-01   p_cons 3.962963e-05   p_joint 2.907407e-04

Joint ci ratio: 1.398015e-01	ci left: 2.697588e-04	ci right 3.106572e-04	k: 785	n:2710000
Cons ci ratio: 3.771946e-01	ci left: 3.235770e-05	ci right 4.771144e-05	k: 107	n:2710000
KS ci ratio: 2.652088e-03	ci left: 4.457501e-01	ci right 4.469342e-01	k: 1209587	n:2710000
ESYT2   2710000 perm   3185 sec   (851 perm/sec)   p_kst 4.463421e-01   p_cons 3.948339e-05   p_joint 2.896679e-04

Joint ci ratio: 1.424550e-01	ci left: 2.584816e-04	ci right 2.984773e-04	k: 756	n:2720000
Cons ci ratio: 3.754603e-01	ci left: 3.257162e-05	ci right 4.793830e-05	k: 108	n:2720000
KS ci ratio: 2.647036e-03	ci left: 4.457834e-01	ci right 4.469653e-01	k: 1214138	n:2720000
ESYT2   2720000 perm   3207 sec   (848 perm/sec)   p_kst 4.463743e-01   p_cons 3.970588e-05   p_joint 2.779412e-04

Joint ci ratio: 1.420801e-01	ci left: 2.589478e-04	ci right 2.989013e-04	k: 760	n:2730000
Cons ci ratio: 3.754603e-01	ci left: 3.245230e-05	ci right 4.776270e-05	k: 108	n:2730000
KS ci ratio: 2.642046e-03	ci left: 4.458102e-01	ci right 4.469899e-01	k: 1218672	n:2730000
ESYT2   2730000 perm   3228 sec   (846 perm/sec)   p_kst 4.464000e-01   p_cons 3.956044e-05   p_joint 2.783883e-04

Joint ci ratio: 1.420801e-01	ci left: 2.580028e-04	ci right 2.978104e-04	k: 760	n:2740000
Cons ci ratio: 3.754604e-01	ci left: 3.233387e-05	ci right 4.758839e-05	k: 108	n:2740000
KS ci ratio: 2.637248e-03	ci left: 4.458061e-01	ci right 4.469837e-01	k: 1223122	n:2740000
ESYT2   2740000 perm   3250 sec   (843 perm/sec)   p_kst 4.463949e-01   p_cons 3.941606e-05   p_joint 2.773723e-04

Joint ci ratio: 1.418938e-01	ci left: 2.577660e-04	ci right 2.974806e-04	k: 762	n:2750000
Cons ci ratio: 3.737498e-01	ci left: 3.254569e-05	ci right 4.781306e-05	k: 109	n:2750000
KS ci ratio: 2.632514e-03	ci left: 4.457949e-01	ci right 4.469703e-01	k: 1227552	n:2750000
ESYT2   2750000 perm   3272 sec   (841 perm/sec)   p_kst 4.463825e-01   p_cons 3.963636e-05   p_joint 2.770909e-04

Joint ci ratio: 1.416157e-01	ci left: 2.578805e-04	ci right 2.975282e-04	k: 765	n:2760000
Cons ci ratio: 3.737498e-01	ci left: 3.242777e-05	ci right 4.763982e-05	k: 109	n:2760000
KS ci ratio: 2.627698e-03	ci left: 4.458040e-01	ci right 4.469773e-01	k: 1232038	n:2760000
ESYT2   2760000 perm   3294 sec   (838 perm/sec)   p_kst 4.463906e-01   p_cons 3.949275e-05   p_joint 2.771739e-04

Joint ci ratio: 1.426439e-01	ci left: 2.531195e-04	ci right 2.923419e-04	k: 754	n:2770000
Cons ci ratio: 3.720624e-01	ci left: 3.263788e-05	ci right 4.786253e-05	k: 110	n:2770000
KS ci ratio: 2.623002e-03	ci left: 4.457953e-01	ci right 4.469665e-01	k: 1236475	n:2770000
ESYT2   2770000 perm   3316 sec   (835 perm/sec)   p_kst 4.463809e-01   p_cons 3.971119e-05   p_joint 2.722022e-04

Joint ci ratio: 1.425496e-01	ci left: 2.525559e-04	ci right 2.916629e-04	k: 755	n:2780000
Cons ci ratio: 3.720624e-01	ci left: 3.252048e-05	ci right 4.769036e-05	k: 110	n:2780000
KS ci ratio: 2.618314e-03	ci left: 4.457900e-01	ci right 4.469591e-01	k: 1240921	n:2780000
ESYT2   2780000 perm   3338 sec   (833 perm/sec)   p_kst 4.463745e-01   p_cons 3.956835e-05   p_joint 2.715827e-04

Joint ci ratio: 1.423614e-01	ci left: 2.523420e-04	ci right 2.913599e-04	k: 757	n:2790000
Cons ci ratio: 3.720625e-01	ci left: 3.240392e-05	ci right 4.751943e-05	k: 110	n:2790000
KS ci ratio: 2.613794e-03	ci left: 4.457578e-01	ci right 4.469248e-01	k: 1245292	n:2790000
ESYT2   2790000 perm   3360 sec   (830 perm/sec)   p_kst 4.463412e-01   p_cons 3.942652e-05   p_joint 2.713262e-04

Joint ci ratio: 1.420806e-01	ci left: 2.524741e-04	ci right 2.914288e-04	k: 760	n:2800000
Cons ci ratio: 3.703977e-01	ci left: 3.261201e-05	ci right 4.774003e-05	k: 111	n:2800000
KS ci ratio: 2.609085e-03	ci left: 4.457658e-01	ci right 4.469307e-01	k: 1249775	n:2800000
ESYT2   2800000 perm   3382 sec   (828 perm/sec)   p_kst 4.463482e-01   p_cons 3.964286e-05   p_joint 2.714286e-04

Joint ci ratio: 1.419873e-01	ci left: 2.519188e-04	ci right 2.907602e-04	k: 761	n:2810000
Cons ci ratio: 3.703977e-01	ci left: 3.249595e-05	ci right 4.757014e-05	k: 111	n:2810000
KS ci ratio: 2.604355e-03	ci left: 4.457827e-01	ci right 4.469455e-01	k: 1254283	n:2810000
ESYT2   2810000 perm   3404 sec   (825 perm/sec)   p_kst 4.463641e-01   p_cons 3.950178e-05   p_joint 2.708185e-04

Joint ci ratio: 1.416161e-01	ci left: 2.523936e-04	ci right 2.911979e-04	k: 765	n:2820000
Cons ci ratio: 3.703978e-01	ci left: 3.238072e-05	ci right 4.740145e-05	k: 111	n:2820000
KS ci ratio: 2.599744e-03	ci left: 4.457817e-01	ci right 4.469425e-01	k: 1258741	n:2820000
ESYT2   2820000 perm   3427 sec   (823 perm/sec)   p_kst 4.463621e-01   p_cons 3.936170e-05   p_joint 2.712766e-04

Joint ci ratio: 1.414316e-01	ci left: 2.521834e-04	ci right 2.909006e-04	k: 767	n:2830000
Cons ci ratio: 3.703978e-01	ci left: 3.226630e-05	ci right 4.723396e-05	k: 111	n:2830000
KS ci ratio: 2.595027e-03	ci left: 4.458055e-01	ci right 4.469642e-01	k: 1263269	n:2830000
ESYT2   2830000 perm   3449 sec   (821 perm/sec)   p_kst 4.463848e-01   p_cons 3.922261e-05   p_joint 2.710247e-04

Joint ci ratio: 1.412478e-01	ci left: 2.519748e-04	ci right 2.906054e-04	k: 769	n:2840000
Cons ci ratio: 3.703978e-01	ci left: 3.215269e-05	ci right 4.706764e-05	k: 111	n:2840000
KS ci ratio: 2.590559e-03	ci left: 4.457865e-01	ci right 4.469432e-01	k: 1267676	n:2840000
ESYT2   2840000 perm   3471 sec   (818 perm/sec)   p_kst 4.463648e-01   p_cons 3.908451e-05   p_joint 2.707746e-04

Joint ci ratio: 1.409735e-01	ci left: 2.521061e-04	ci right 2.906755e-04	k: 772	n:2850000
Cons ci ratio: 3.703978e-01	ci left: 3.203987e-05	ci right 4.690249e-05	k: 111	n:2850000
KS ci ratio: 2.586070e-03	ci left: 4.457761e-01	ci right 4.469307e-01	k: 1272107	n:2850000
ESYT2   2850000 perm   3494 sec   (816 perm/sec)   p_kst 4.463533e-01   p_cons 3.894737e-05   p_joint 2.708772e-04

Joint ci ratio: 1.407007e-01	ci left: 2.522366e-04	ci right 2.907451e-04	k: 775	n:2860000
Cons ci ratio: 3.703979e-01	ci left: 3.192784e-05	ci right 4.673850e-05	k: 111	n:2860000
KS ci ratio: 2.581564e-03	ci left: 4.457734e-01	ci right 4.469260e-01	k: 1276560	n:2860000
ESYT2   2860000 perm   3517 sec   (813 perm/sec)   p_kst 4.463497e-01   p_cons 3.881119e-05   p_joint 2.709790e-04

Joint ci ratio: 1.416164e-01	ci left: 2.479965e-04	ci right 2.861248e-04	k: 765	n:2870000
Cons ci ratio: 3.687553e-01	ci left: 3.213267e-05	ci right 4.695630e-05	k: 112	n:2870000
KS ci ratio: 2.576988e-03	ci left: 4.457889e-01	ci right 4.469395e-01	k: 1281065	n:2870000
ESYT2   2870000 perm   3539 sec   (811 perm/sec)   p_kst 4.463641e-01   p_cons 3.902439e-05   p_joint 2.665505e-04

Joint ci ratio: 1.414319e-01	ci left: 2.478052e-04	ci right 2.858503e-04	k: 767	n:2880000
Cons ci ratio: 3.687553e-01	ci left: 3.202110e-05	ci right 4.679325e-05	k: 112	n:2880000
KS ci ratio: 2.572513e-03	ci left: 4.457893e-01	ci right 4.469379e-01	k: 1285527	n:2880000
ESYT2   2880000 perm   3562 sec   (809 perm/sec)   p_kst 4.463635e-01   p_cons 3.888889e-05   p_joint 2.663194e-04

Joint ci ratio: 1.410650e-01	ci left: 2.482829e-04	ci right 2.862942e-04	k: 771	n:2890000
Cons ci ratio: 3.687553e-01	ci left: 3.191030e-05	ci right 4.663134e-05	k: 112	n:2890000
KS ci ratio: 2.568112e-03	ci left: 4.457800e-01	ci right 4.469266e-01	k: 1289961	n:2890000
ESYT2   2890000 perm   3585 sec   (806 perm/sec)   p_kst 4.463533e-01   p_cons 3.875433e-05   p_joint 2.667820e-04

Joint ci ratio: 1.407917e-01	ci left: 2.484248e-04	ci right 2.863779e-04	k: 774	n:2900000
Cons ci ratio: 3.687553e-01	ci left: 3.180026e-05	ci right 4.647054e-05	k: 112	n:2900000
KS ci ratio: 2.563627e-03	ci left: 4.457912e-01	ci right 4.469358e-01	k: 1294454	n:2900000
ESYT2   2900000 perm   3608 sec   (804 perm/sec)   p_kst 4.463634e-01   p_cons 3.862069e-05   p_joint 2.668966e-04

Joint ci ratio: 1.406104e-01	ci left: 2.482342e-04	ci right 2.861052e-04	k: 776	n:2910000
Cons ci ratio: 3.671344e-01	ci left: 3.200285e-05	ci right 4.668613e-05	k: 113	n:2910000
KS ci ratio: 2.559236e-03	ci left: 4.457889e-01	ci right 4.469315e-01	k: 1298908	n:2910000
ESYT2   2910000 perm   3631 sec   (801 perm/sec)   p_kst 4.463601e-01   p_cons 3.883162e-05   p_joint 2.666667e-04

Joint ci ratio: 1.404298e-01	ci left: 2.480449e-04	ci right 2.858344e-04	k: 778	n:2920000
Cons ci ratio: 3.655346e-01	ci left: 3.220419e-05	ci right 4.690010e-05	k: 114	n:2920000
KS ci ratio: 2.554911e-03	ci left: 4.457780e-01	ci right 4.469187e-01	k: 1303337	n:2920000
ESYT2   2920000 perm   3654 sec   (799 perm/sec)   p_kst 4.463483e-01   p_cons 3.904110e-05   p_joint 2.664384e-04

Joint ci ratio: 1.403398e-01	ci left: 2.475277e-04	ci right 2.852122e-04	k: 779	n:2930000
Cons ci ratio: 3.639556e-01	ci left: 3.240430e-05	ci right 4.711247e-05	k: 115	n:2930000
KS ci ratio: 2.550543e-03	ci left: 4.457798e-01	ci right 4.469186e-01	k: 1307803	n:2930000
ESYT2   2930000 perm   3677 sec   (797 perm/sec)   p_kst 4.463491e-01   p_cons 3.924915e-05   p_joint 2.658703e-04

Joint ci ratio: 1.405202e-01	ci left: 2.460293e-04	ci right 2.835379e-04	k: 777	n:2940000
Cons ci ratio: 3.639556e-01	ci left: 3.229408e-05	ci right 4.695223e-05	k: 115	n:2940000
KS ci ratio: 2.546082e-03	ci left: 4.458041e-01	ci right 4.469409e-01	k: 1312335	n:2940000
ESYT2   2940000 perm   3701 sec   (794 perm/sec)   p_kst 4.463724e-01   p_cons 3.911565e-05   p_joint 2.642857e-04

Joint ci ratio: 1.404300e-01	ci left: 2.455224e-04	ci right 2.829277e-04	k: 778	n:2950000
Cons ci ratio: 3.639556e-01	ci left: 3.218461e-05	ci right 4.679307e-05	k: 115	n:2950000
KS ci ratio: 2.541905e-03	ci left: 4.457774e-01	ci right 4.469122e-01	k: 1316717	n:2950000
ESYT2   2950000 perm   3724 sec   (792 perm/sec)   p_kst 4.463447e-01   p_cons 3.898305e-05   p_joint 2.637288e-04

Joint ci ratio: 1.401604e-01	ci left: 2.456709e-04	ci right 2.830209e-04	k: 781	n:2960000
Cons ci ratio: 3.639557e-01	ci left: 3.207588e-05	ci right 4.663498e-05	k: 115	n:2960000
KS ci ratio: 2.537464e-03	ci left: 4.458062e-01	ci right 4.469392e-01	k: 1321263	n:2960000
ESYT2   2960000 perm   3747 sec   (790 perm/sec)   p_kst 4.463726e-01   p_cons 3.885135e-05   p_joint 2.638514e-04

Joint ci ratio: 1.405204e-01	ci left: 2.435442e-04	ci right 2.806739e-04	k: 777	n:2970000
Cons ci ratio: 3.639557e-01	ci left: 3.196788e-05	ci right 4.647796e-05	k: 115	n:2970000
KS ci ratio: 2.533138e-03	ci left: 4.458170e-01	ci right 4.469481e-01	k: 1325756	n:2970000
ESYT2   2970000 perm   3771 sec   (788 perm/sec)   p_kst 4.463825e-01   p_cons 3.872054e-05   p_joint 2.616162e-04

Joint ci ratio: 1.400709e-01	ci left: 2.443459e-04	ci right 2.814688e-04	k: 782	n:2980000
Cons ci ratio: 3.639557e-01	ci left: 3.186060e-05	ci right 4.632200e-05	k: 115	n:2980000
KS ci ratio: 2.528848e-03	ci left: 4.458251e-01	ci right 4.469542e-01	k: 1330241	n:2980000
ESYT2   2980000 perm   3794 sec   (785 perm/sec)   p_kst 4.463896e-01   p_cons 3.859060e-05   p_joint 2.624161e-04

Joint ci ratio: 1.409744e-01	ci left: 2.403017e-04	ci right 2.770655e-04	k: 772	n:2990000
Cons ci ratio: 3.639557e-01	ci left: 3.175405e-05	ci right 4.616707e-05	k: 115	n:2990000
KS ci ratio: 2.524597e-03	ci left: 4.458297e-01	ci right 4.469570e-01	k: 1334716	n:2990000
ESYT2   2990000 perm   3818 sec   (783 perm/sec)   p_kst 4.463933e-01   p_cons 3.846154e-05   p_joint 2.581940e-04

Joint ci ratio: 1.405206e-01	ci left: 2.411087e-04	ci right 2.778672e-04	k: 777	n:3000000
Cons ci ratio: 3.623970e-01	ci left: 3.195112e-05	ci right 4.637680e-05	k: 116	n:3000000
KS ci ratio: 2.520321e-03	ci left: 4.458434e-01	ci right 4.469688e-01	k: 1339218	n:3000000
ESYT2   3000000 perm   3842 sec   (781 perm/sec)   p_kst 4.464060e-01   p_cons 3.866667e-05   p_joint 2.590000e-04

Joint ci ratio: 1.408833e-01	ci left: 2.390255e-04	ci right 2.755684e-04	k: 773	n:3010000
Cons ci ratio: 3.623970e-01	ci left: 3.184497e-05	ci right 4.622273e-05	k: 116	n:3010000
KS ci ratio: 2.516184e-03	ci left: 4.458340e-01	ci right 4.469575e-01	k: 1343651	n:3010000
ESYT2   3010000 perm   3865 sec   (779 perm/sec)   p_kst 4.463957e-01   p_cons 3.853821e-05   p_joint 2.568106e-04

Joint ci ratio: 1.401607e-01	ci left: 2.407900e-04	ci right 2.773980e-04	k: 781	n:3020000
Cons ci ratio: 3.593387e-01	ci left: 3.234173e-05	ci right 4.679172e-05	k: 118	n:3020000
KS ci ratio: 2.512002e-03	ci left: 4.458372e-01	ci right 4.469589e-01	k: 1348122	n:3020000
ESYT2   3020000 perm   3889 sec   (777 perm/sec)   p_kst 4.463980e-01   p_cons 3.907285e-05   p_joint 2.586093e-04

Joint ci ratio: 1.172680e-01	ci left: 3.470256e-04	ci right 3.905722e-04	k: 1116	n:3030000
Cons ci ratio: 3.578383e-01	ci left: 3.253530e-05	ci right 4.699693e-05	k: 119	n:3030000
KS ci ratio: 2.507897e-03	ci left: 4.458296e-01	ci right 4.469494e-01	k: 1352560	n:3030000
ESYT2   3030000 perm   3913 sec   (774 perm/sec)   p_kst 4.463894e-01   p_cons 3.927393e-05   p_joint 3.683168e-04

Joint ci ratio: 1.167983e-01	ci left: 3.487579e-04	ci right 3.923346e-04	k: 1125	n:3040000
Cons ci ratio: 3.563565e-01	ci left: 3.272771e-05	ci right 4.720067e-05	k: 120	n:3040000
KS ci ratio: 2.503874e-03	ci left: 4.458098e-01	ci right 4.469278e-01	k: 1356961	n:3040000
ESYT2   3040000 perm   3936 sec   (772 perm/sec)   p_kst 4.463687e-01   p_cons 3.947368e-05   p_joint 3.700658e-04

Joint ci ratio: 1.166947e-01	ci left: 3.482511e-04	ci right 3.917231e-04	k: 1127	n:3050000
Cons ci ratio: 3.563565e-01	ci left: 3.262041e-05	ci right 4.704591e-05	k: 120	n:3050000
KS ci ratio: 2.499747e-03	ci left: 4.458144e-01	ci right 4.469306e-01	k: 1361436	n:3050000
ESYT2   3050000 perm   3960 sec   (770 perm/sec)   p_kst 4.463725e-01   p_cons 3.934426e-05   p_joint 3.695082e-04

Joint ci ratio: 1.165398e-01	ci left: 3.480648e-04	ci right 3.914519e-04	k: 1130	n:3060000
Cons ci ratio: 3.563565e-01	ci left: 3.251380e-05	ci right 4.689217e-05	k: 120	n:3060000
KS ci ratio: 2.495598e-03	ci left: 4.458275e-01	ci right 4.469418e-01	k: 1365937	n:3060000
ESYT2   3060000 perm   3984 sec   (768 perm/sec)   p_kst 4.463846e-01   p_cons 3.921569e-05   p_joint 3.692810e-04

Joint ci ratio: 1.163343e-01	ci left: 3.481960e-04	ci right 3.915177e-04	k: 1134	n:3070000
Cons ci ratio: 3.548930e-01	ci left: 3.270453e-05	ci right 4.709414e-05	k: 121	n:3070000
KS ci ratio: 2.491475e-03	ci left: 4.458392e-01	ci right 4.469517e-01	k: 1370434	n:3070000
ESYT2   3070000 perm   4009 sec   (766 perm/sec)   p_kst 4.463954e-01   p_cons 3.941368e-05   p_joint 3.693811e-04

Joint ci ratio: 1.052325e-01	ci left: 4.266232e-04	ci right 4.743242e-04	k: 1386	n:3080000
Cons ci ratio: 3.534474e-01	ci left: 3.289414e-05	ci right 4.729468e-05	k: 122	n:3080000
KS ci ratio: 2.487369e-03	ci left: 4.458519e-01	ci right 4.469625e-01	k: 1374934	n:3080000
ESYT2   3080000 perm   4032 sec   (764 perm/sec)   p_kst 4.464071e-01   p_cons 3.961039e-05   p_joint 4.500000e-04

Joint ci ratio: 1.050811e-01	ci left: 4.265030e-04	ci right 4.741177e-04	k: 1390	n:3090000
Cons ci ratio: 3.534474e-01	ci left: 3.278769e-05	ci right 4.714162e-05	k: 122	n:3090000
KS ci ratio: 2.483246e-03	ci left: 4.458715e-01	ci right 4.469804e-01	k: 1379456	n:3090000
ESYT2   3090000 perm   4056 sec   (762 perm/sec)   p_kst 4.464259e-01   p_cons 3.948220e-05   p_joint 4.498382e-04

Joint ci ratio: 1.049304e-01	ci left: 4.263836e-04	ci right 4.739125e-04	k: 1394	n:3100000
Cons ci ratio: 3.534474e-01	ci left: 3.268192e-05	ci right 4.698955e-05	k: 122	n:3100000
KS ci ratio: 2.479363e-03	ci left: 4.458475e-01	ci right 4.469546e-01	k: 1383843	n:3100000
ESYT2   3100000 perm   4081 sec   (760 perm/sec)   p_kst 4.464010e-01   p_cons 3.935484e-05   p_joint 4.496774e-04

Joint ci ratio: 1.047803e-01	ci left: 4.262650e-04	ci right 4.737086e-04	k: 1398	n:3110000
Cons ci ratio: 3.534475e-01	ci left: 3.257683e-05	ci right 4.683846e-05	k: 122	n:3110000
KS ci ratio: 2.475248e-03	ci left: 4.458734e-01	ci right 4.469788e-01	k: 1388385	n:3110000
ESYT2   3110000 perm   4105 sec   (758 perm/sec)   p_kst 4.464260e-01   p_cons 3.922830e-05   p_joint 4.495177e-04

Joint ci ratio: 1.045935e-01	ci left: 4.264594e-04	ci right 4.738348e-04	k: 1403	n:3120000
Cons ci ratio: 3.520193e-01	ci left: 3.276454e-05	ci right 4.703713e-05	k: 123	n:3120000
KS ci ratio: 2.471214e-03	ci left: 4.458871e-01	ci right 4.469906e-01	k: 1392889	n:3120000
ESYT2   3120000 perm   4129 sec   (756 perm/sec)   p_kst 4.464388e-01   p_cons 3.942308e-05   p_joint 4.496795e-04

Joint ci ratio: 1.043337e-01	ci left: 4.272749e-04	ci right 4.746157e-04	k: 1410	n:3130000
Cons ci ratio: 3.520194e-01	ci left: 3.265986e-05	ci right 4.688686e-05	k: 123	n:3130000
KS ci ratio: 2.467199e-03	ci left: 4.459009e-01	ci right 4.470027e-01	k: 1397394	n:3130000
ESYT2   3130000 perm   4154 sec   (754 perm/sec)   p_kst 4.464518e-01   p_cons 3.929712e-05   p_joint 4.504792e-04

Joint ci ratio: 1.047805e-01	ci left: 4.221924e-04	ci right 4.691827e-04	k: 1398	n:3140000
Cons ci ratio: 3.492143e-01	ci left: 3.313670e-05	ci right 4.743035e-05	k: 125	n:3140000
KS ci ratio: 2.463211e-03	ci left: 4.459131e-01	ci right 4.470131e-01	k: 1401894	n:3140000
ESYT2   3140000 perm   4178 sec   (751 perm/sec)   p_kst 4.464631e-01   p_cons 3.980892e-05   p_joint 4.452229e-04

Joint ci ratio: 1.044079e-01	ci left: 4.239436e-04	ci right 4.709509e-04	k: 1408	n:3150000
Cons ci ratio: 3.492143e-01	ci left: 3.303150e-05	ci right 4.727977e-05	k: 125	n:3150000
KS ci ratio: 2.459354e-03	ci left: 4.459027e-01	ci right 4.470009e-01	k: 1406323	n:3150000
ESYT2   3150000 perm   4203 sec   (749 perm/sec)   p_kst 4.464517e-01   p_cons 3.968254e-05   p_joint 4.469841e-04

Joint ci ratio: 1.042231e-01	ci left: 4.241431e-04	ci right 4.710841e-04	k: 1413	n:3160000
Cons ci ratio: 3.492143e-01	ci left: 3.292697e-05	ci right 4.713016e-05	k: 125	n:3160000
KS ci ratio: 2.455434e-03	ci left: 4.459087e-01	ci right 4.470053e-01	k: 1410804	n:3160000
ESYT2   3160000 perm   4227 sec   (748 perm/sec)   p_kst 4.464570e-01   p_cons 3.955696e-05   p_joint 4.471519e-04

Joint ci ratio: 1.040760e-01	ci left: 4.240340e-04	ci right 4.708927e-04	k: 1417	n:3170000
Cons ci ratio: 3.492144e-01	ci left: 3.282310e-05	ci right 4.698148e-05	k: 125	n:3170000
KS ci ratio: 2.451485e-03	ci left: 4.459243e-01	ci right 4.470191e-01	k: 1415315	n:3170000
ESYT2   3170000 perm   4252 sec   (746 perm/sec)   p_kst 4.464716e-01   p_cons 3.943218e-05   p_joint 4.470032e-04

Joint ci ratio: 1.040394e-01	ci left: 4.230069e-04	ci right 4.697345e-04	k: 1418	n:3180000
Cons ci ratio: 3.492144e-01	ci left: 3.271988e-05	ci right 4.683374e-05	k: 125	n:3180000
KS ci ratio: 2.447658e-03	ci left: 4.459189e-01	ci right 4.470120e-01	k: 1419760	n:3180000
ESYT2   3180000 perm   4277 sec   (744 perm/sec)   p_kst 4.464654e-01   p_cons 3.930818e-05   p_joint 4.459119e-04

Joint ci ratio: 1.038931e-01	ci left: 4.229021e-04	ci right 4.695485e-04	k: 1422	n:3190000
Cons ci ratio: 3.492144e-01	ci left: 3.261731e-05	ci right 4.668693e-05	k: 125	n:3190000
KS ci ratio: 2.443756e-03	ci left: 4.459324e-01	ci right 4.470238e-01	k: 1424265	n:3190000
ESYT2   3190000 perm   4301 sec   (742 perm/sec)   p_kst 4.464781e-01   p_cons 3.918495e-05   p_joint 4.457680e-04

Joint ci ratio: 1.037110e-01	ci left: 4.231025e-04	ci right 4.696842e-04	k: 1427	n:3200000
Cons ci ratio: 3.464753e-01	ci left: 3.308578e-05	ci right 4.722042e-05	k: 127	n:3200000
KS ci ratio: 2.439865e-03	ci left: 4.459474e-01	ci right 4.470371e-01	k: 1428775	n:3200000
ESYT2   3200000 perm   4326 sec   (740 perm/sec)   p_kst 4.464922e-01   p_cons 3.968750e-05   p_joint 4.459375e-04

Joint ci ratio: 1.033857e-01	ci left: 4.245156e-04	ci right 4.710974e-04	k: 1436	n:3210000
Cons ci ratio: 3.451298e-01	ci left: 3.326719e-05	ci right 4.741179e-05	k: 128	n:3210000
KS ci ratio: 2.436078e-03	ci left: 4.459448e-01	ci right 4.470328e-01	k: 1433229	n:3210000
ESYT2   3210000 perm   4351 sec   (738 perm/sec)   p_kst 4.464888e-01   p_cons 3.987539e-05   p_joint 4.473520e-04

Joint ci ratio: 8.929516e-02	ci left: 5.714230e-04	ci right 6.251339e-04	k: 1925	n:3220000
Cons ci ratio: 3.437997e-01	ci left: 3.344757e-05	ci right 4.760187e-05	k: 129	n:3220000
KS ci ratio: 2.432282e-03	ci left: 4.459479e-01	ci right 4.470342e-01	k: 1437701	n:3220000
ESYT2   3220000 perm   4376 sec   (736 perm/sec)   p_kst 4.464910e-01   p_cons 4.006211e-05   p_joint 5.978261e-04

Joint ci ratio: 8.913332e-02	ci left: 5.717727e-04	ci right 6.254140e-04	k: 1932	n:3230000
Cons ci ratio: 3.437998e-01	ci left: 3.334401e-05	ci right 4.745450e-05	k: 129	n:3230000
KS ci ratio: 2.428518e-03	ci left: 4.459478e-01	ci right 4.470324e-01	k: 1442163	n:3230000
ESYT2   3230000 perm   4402 sec   (734 perm/sec)   p_kst 4.464901e-01   p_cons 3.993808e-05   p_joint 5.981424e-04

Joint ci ratio: 8.917958e-02	ci left: 5.694044e-04	ci right 6.228527e-04	k: 1930	n:3240000
Cons ci ratio: 3.437998e-01	ci left: 3.324110e-05	ci right 4.730803e-05	k: 129	n:3240000
KS ci ratio: 2.424752e-03	ci left: 4.459518e-01	ci right 4.470347e-01	k: 1446638	n:3240000
ESYT2   3240000 perm   4427 sec   (732 perm/sec)   p_kst 4.464932e-01   p_cons 3.981481e-05   p_joint 5.956790e-04

Joint ci ratio: 8.894950e-02	ci left: 5.706608e-04	ci right 6.240817e-04	k: 1940	n:3250000
Cons ci ratio: 3.411852e-01	ci left: 3.370128e-05	ci right 4.783058e-05	k: 131	n:3250000
KS ci ratio: 2.420965e-03	ci left: 4.459637e-01	ci right 4.470450e-01	k: 1451139	n:3250000
ESYT2   3250000 perm   4452 sec   (730 perm/sec)   p_kst 4.465043e-01   p_cons 4.030769e-05   p_joint 5.969231e-04

Joint ci ratio: 8.878952e-02	ci left: 5.710098e-04	ci right 6.243622e-04	k: 1947	n:3260000
Cons ci ratio: 3.411852e-01	ci left: 3.359790e-05	ci right 4.768386e-05	k: 131	n:3260000
KS ci ratio: 2.417229e-03	ci left: 4.459685e-01	ci right 4.470481e-01	k: 1455617	n:3260000
ESYT2   3260000 perm   4478 sec   (728 perm/sec)   p_kst 4.465083e-01   p_cons 4.018405e-05   p_joint 5.972393e-04

Joint ci ratio: 8.858508e-02	ci left: 5.719549e-04	ci right 6.252662e-04	k: 1956	n:3270000
Cons ci ratio: 3.411853e-01	ci left: 3.349516e-05	ci right 4.753804e-05	k: 131	n:3270000
KS ci ratio: 2.413492e-03	ci left: 4.459773e-01	ci right 4.470552e-01	k: 1460108	n:3270000
ESYT2   3270000 perm   4504 sec   (726 perm/sec)   p_kst 4.465162e-01   p_cons 4.006116e-05   p_joint 5.981651e-04

Joint ci ratio: 8.849472e-02	ci left: 5.714036e-04	ci right 6.246064e-04	k: 1960	n:3280000
Cons ci ratio: 3.411853e-01	ci left: 3.339304e-05	ci right 4.739310e-05	k: 131	n:3280000
KS ci ratio: 2.409797e-03	ci left: 4.459808e-01	ci right 4.470571e-01	k: 1464582	n:3280000
ESYT2   3280000 perm   4529 sec   (724 perm/sec)   p_kst 4.465189e-01   p_cons 3.993902e-05   p_joint 5.975610e-04

Joint ci ratio: 8.840463e-02	ci left: 5.708558e-04	ci right 6.239506e-04	k: 1964	n:3290000
Cons ci ratio: 3.411853e-01	ci left: 3.329154e-05	ci right 4.724905e-05	k: 131	n:3290000
KS ci ratio: 2.406266e-03	ci left: 4.459539e-01	ci right 4.470286e-01	k: 1468956	n:3290000
ESYT2   3290000 perm   4555 sec   (722 perm/sec)   p_kst 4.464912e-01   p_cons 3.981763e-05   p_joint 5.969605e-04

Joint ci ratio: 8.831481e-02	ci left: 5.703112e-04	ci right 6.232987e-04	k: 1968	n:3300000
Cons ci ratio: 3.411853e-01	ci left: 3.319065e-05	ci right 4.710587e-05	k: 131	n:3300000
KS ci ratio: 2.402740e-03	ci left: 4.459296e-01	ci right 4.470026e-01	k: 1473338	n:3300000
ESYT2   3300000 perm   4580 sec   (720 perm/sec)   p_kst 4.464661e-01   p_cons 3.969697e-05   p_joint 5.963636e-04

Joint ci ratio: 8.811362e-02	ci left: 5.712473e-04	ci right 6.241946e-04	k: 1977	n:3310000
Cons ci ratio: 3.399002e-01	ci left: 3.336666e-05	ci right 4.729141e-05	k: 132	n:3310000
KS ci ratio: 2.399066e-03	ci left: 4.459390e-01	ci right 4.470104e-01	k: 1477831	n:3310000
ESYT2   3310000 perm   4606 sec   (719 perm/sec)   p_kst 4.464746e-01   p_cons 3.987915e-05   p_joint 5.972810e-04

Joint ci ratio: 8.800248e-02	ci left: 5.709995e-04	ci right 6.238537e-04	k: 1982	n:3320000
Cons ci ratio: 3.399002e-01	ci left: 3.326616e-05	ci right 4.714897e-05	k: 132	n:3320000
KS ci ratio: 2.395457e-03	ci left: 4.459383e-01	ci right 4.470081e-01	k: 1482291	n:3320000
ESYT2   3320000 perm   4632 sec   (717 perm/sec)   p_kst 4.464732e-01   p_cons 3.975904e-05   p_joint 5.969880e-04

Joint ci ratio: 8.780341e-02	ci left: 5.719281e-04	ci right 6.247424e-04	k: 1991	n:3330000
Cons ci ratio: 3.386296e-01	ci left: 3.344098e-05	ci right 4.733317e-05	k: 133	n:3330000
KS ci ratio: 2.391866e-03	ci left: 4.459374e-01	ci right 4.470056e-01	k: 1486750	n:3330000
ESYT2   3330000 perm   4658 sec   (715 perm/sec)   p_kst 4.464715e-01   p_cons 3.993994e-05   p_joint 5.978979e-04

Joint ci ratio: 8.754006e-02	ci left: 5.737298e-04	ci right 6.265434e-04	k: 2003	n:3340000
Cons ci ratio: 3.386296e-01	ci left: 3.334086e-05	ci right 4.719145e-05	k: 133	n:3340000
KS ci ratio: 2.388314e-03	ci left: 4.459317e-01	ci right 4.469983e-01	k: 1491193	n:3340000
ESYT2   3340000 perm   4684 sec   (713 perm/sec)   p_kst 4.464650e-01   p_cons 3.982036e-05   p_joint 5.997006e-04

Joint ci ratio: 8.762768e-02	ci left: 5.708493e-04	ci right 6.234530e-04	k: 1999	n:3350000
Cons ci ratio: 3.386296e-01	ci left: 3.324133e-05	ci right 4.705058e-05	k: 133	n:3350000
KS ci ratio: 2.384672e-03	ci left: 4.459481e-01	ci right 4.470131e-01	k: 1495710	n:3350000
ESYT2   3350000 perm   4710 sec   (711 perm/sec)   p_kst 4.464806e-01   p_cons 3.970149e-05   p_joint 5.967164e-04

Joint ci ratio: 8.743114e-02	ci left: 5.717703e-04	ci right 6.243347e-04	k: 2008	n:3360000
Cons ci ratio: 3.373731e-01	ci left: 3.341476e-05	ci right 4.723334e-05	k: 134	n:3360000
KS ci ratio: 2.381030e-03	ci left: 4.459677e-01	ci right 4.470312e-01	k: 1500238	n:3360000
ESYT2   3360000 perm   4736 sec   (709 perm/sec)   p_kst 4.464994e-01   p_cons 3.988095e-05   p_joint 5.976190e-04

Joint ci ratio: 8.895045e-02	ci left: 5.503403e-04	ci right 6.018594e-04	k: 1940	n:3370000
Cons ci ratio: 3.373731e-01	ci left: 3.331561e-05	ci right 4.709318e-05	k: 134	n:3370000
KS ci ratio: 2.377517e-03	ci left: 4.459638e-01	ci right 4.470256e-01	k: 1504687	n:3370000
ESYT2   3370000 perm   4762 sec   (708 perm/sec)   p_kst 4.464947e-01   p_cons 3.976261e-05   p_joint 5.756677e-04

Joint ci ratio: 8.971689e-02	ci left: 5.391667e-04	ci right 5.900976e-04	k: 1907	n:3380000
Cons ci ratio: 3.373731e-01	ci left: 3.321704e-05	ci right 4.695385e-05	k: 134	n:3380000
KS ci ratio: 2.373978e-03	ci left: 4.459687e-01	ci right 4.470290e-01	k: 1509166	n:3380000
ESYT2   3380000 perm   4789 sec   (706 perm/sec)   p_kst 4.464988e-01   p_cons 3.964497e-05   p_joint 5.642012e-04

Joint ci ratio: 8.959957e-02	ci left: 5.390181e-04	ci right 5.898649e-04	k: 1912	n:3390000
Cons ci ratio: 3.373731e-01	ci left: 3.311905e-05	ci right 4.681534e-05	k: 134	n:3390000
KS ci ratio: 2.370524e-03	ci left: 4.459589e-01	ci right 4.470176e-01	k: 1513595	n:3390000
ESYT2   3390000 perm   4815 sec   (704 perm/sec)   p_kst 4.464882e-01   p_cons 3.952802e-05   p_joint 5.640118e-04

Joint ci ratio: 8.978769e-02	ci left: 5.351326e-04	ci right 5.857243e-04	k: 1904	n:3400000
Cons ci ratio: 3.373731e-01	ci left: 3.302165e-05	ci right 4.667765e-05	k: 134	n:3400000
KS ci ratio: 2.366971e-03	ci left: 4.459732e-01	ci right 4.470304e-01	k: 1518106	n:3400000
ESYT2   3400000 perm   4842 sec   (702 perm/sec)   p_kst 4.465018e-01   p_cons 3.941176e-05   p_joint 5.600000e-04

Joint ci ratio: 8.959972e-02	ci left: 5.358567e-04	ci right 5.864053e-04	k: 1912	n:3410000
Cons ci ratio: 3.373732e-01	ci left: 3.292481e-05	ci right 4.654077e-05	k: 134	n:3410000
KS ci ratio: 2.363415e-03	ci left: 4.459913e-01	ci right 4.470469e-01	k: 1522630	n:3410000
ESYT2   3410000 perm   4868 sec   (700 perm/sec)   p_kst 4.465191e-01   p_cons 3.929619e-05   p_joint 5.607038e-04

Joint ci ratio: 9.074614e-02	ci left: 5.205711e-04	ci right 5.703394e-04	k: 1864	n:3420000
Cons ci ratio: 3.373732e-01	ci left: 3.282854e-05	ci right 4.640468e-05	k: 134	n:3420000
KS ci ratio: 2.359839e-03	ci left: 4.460169e-01	ci right 4.470709e-01	k: 1527180	n:3420000
ESYT2   3420000 perm   4895 sec   (699 perm/sec)   p_kst 4.465439e-01   p_cons 3.918129e-05   p_joint 5.450292e-04

Joint ci ratio: 9.089261e-02	ci left: 5.173438e-04	ci right 5.668877e-04	k: 1858	n:3430000
Cons ci ratio: 3.373732e-01	ci left: 3.273283e-05	ci right 4.626939e-05	k: 134	n:3430000
KS ci ratio: 2.356359e-03	ci left: 4.460254e-01	ci right 4.470779e-01	k: 1531672	n:3430000
ESYT2   3430000 perm   4921 sec   (697 perm/sec)   p_kst 4.465516e-01   p_cons 3.906706e-05   p_joint 5.416910e-04

Joint ci ratio: 9.072195e-02	ci left: 5.178285e-04	ci right 5.673208e-04	k: 1865	n:3440000
Cons ci ratio: 3.373732e-01	ci left: 3.263767e-05	ci right 4.613489e-05	k: 134	n:3440000
KS ci ratio: 2.352891e-03	ci left: 4.460347e-01	ci right 4.470857e-01	k: 1536167	n:3440000
ESYT2   3440000 perm   4948 sec   (695 perm/sec)   p_kst 4.465602e-01   p_cons 3.895349e-05   p_joint 5.421512e-04

Joint ci ratio: 9.060065e-02	ci left: 5.177440e-04	ci right 5.671585e-04	k: 1870	n:3450000
Cons ci ratio: 3.373732e-01	ci left: 3.254307e-05	ci right 4.600117e-05	k: 134	n:3450000
KS ci ratio: 2.349609e-03	ci left: 4.460081e-01	ci right 4.470575e-01	k: 1540538	n:3450000
ESYT2   3450000 perm   4974 sec   (694 perm/sec)   p_kst 4.465328e-01   p_cons 3.884058e-05   p_joint 5.420290e-04

Joint ci ratio: 9.050398e-02	ci left: 5.173775e-04	ci right 5.667016e-04	k: 1874	n:3460000
Cons ci ratio: 3.373733e-01	ci left: 3.244901e-05	ci right 4.586822e-05	k: 134	n:3460000
KS ci ratio: 2.346286e-03	ci left: 4.459931e-01	ci right 4.470411e-01	k: 1544949	n:3460000
ESYT2   3460000 perm   5001 sec   (692 perm/sec)   p_kst 4.465171e-01   p_cons 3.872832e-05   p_joint 5.416185e-04

Joint ci ratio: 9.026353e-02	ci left: 5.187032e-04	ci right 5.680154e-04	k: 1884	n:3470000
Cons ci ratio: 3.373733e-01	ci left: 3.235550e-05	ci right 4.573603e-05	k: 134	n:3470000
KS ci ratio: 2.342974e-03	ci left: 4.459789e-01	ci right 4.470253e-01	k: 1549362	n:3470000
ESYT2   3470000 perm   5028 sec   (690 perm/sec)   p_kst 4.465020e-01   p_cons 3.861671e-05   p_joint 5.429395e-04

Joint ci ratio: 9.014406e-02	ci left: 5.186171e-04	ci right 5.678523e-04	k: 1889	n:3480000
Cons ci ratio: 3.373733e-01	ci left: 3.226253e-05	ci right 4.560461e-05	k: 134	n:3480000
KS ci ratio: 2.339685e-03	ci left: 4.459627e-01	ci right 4.470076e-01	k: 1553768	n:3480000
ESYT2   3480000 perm   5055 sec   (688 perm/sec)   p_kst 4.464851e-01   p_cons 3.850575e-05   p_joint 5.428161e-04

Joint ci ratio: 9.004884e-02	ci left: 5.182514e-04	ci right 5.673972e-04	k: 1893	n:3490000
Cons ci ratio: 3.373733e-01	ci left: 3.217008e-05	ci right 4.547393e-05	k: 134	n:3490000
KS ci ratio: 2.336333e-03	ci left: 4.459629e-01	ci right 4.470063e-01	k: 1558231	n:3490000
ESYT2   3490000 perm   5082 sec   (687 perm/sec)   p_kst 4.464845e-01   p_cons 3.839542e-05   p_joint 5.424069e-04

Joint ci ratio: 8.990654e-02	ci left: 5.184464e-04	ci right 5.675289e-04	k: 1899	n:3500000
Cons ci ratio: 3.373733e-01	ci left: 3.207817e-05	ci right 4.534401e-05	k: 134	n:3500000
KS ci ratio: 2.332910e-03	ci left: 4.459814e-01	ci right 4.470233e-01	k: 1562758	n:3500000
ESYT2   3500000 perm   5109 sec   (685 perm/sec)   p_kst 4.465023e-01   p_cons 3.828571e-05   p_joint 5.425714e-04

Joint ci ratio: 8.983568e-02	ci left: 5.178048e-04	ci right 5.667859e-04	k: 1902	n:3510000
Cons ci ratio: 3.373733e-01	ci left: 3.198678e-05	ci right 4.521482e-05	k: 134	n:3510000
KS ci ratio: 2.329507e-03	ci left: 4.459983e-01	ci right 4.470388e-01	k: 1567280	n:3510000
ESYT2   3510000 perm   5136 sec   (683 perm/sec)   p_kst 4.465185e-01   p_cons 3.817664e-05   p_joint 5.418803e-04

Joint ci ratio: 8.988302e-02	ci left: 5.157783e-04	ci right 5.645948e-04	k: 1900	n:3520000
Cons ci ratio: 3.349016e-01	ci left: 3.241614e-05	ci right 4.570233e-05	k: 136	n:3520000
KS ci ratio: 2.326162e-03	ci left: 4.460064e-01	ci right 4.470454e-01	k: 1571771	n:3520000
ESYT2   3520000 perm   5164 sec   (682 perm/sec)   p_kst 4.465259e-01   p_cons 3.863636e-05   p_joint 5.397727e-04

Joint ci ratio: 8.988309e-02	ci left: 5.143172e-04	ci right 5.629954e-04	k: 1900	n:3530000
Cons ci ratio: 3.324835e-01	ci left: 3.284342e-05	ci right 4.618673e-05	k: 138	n:3530000
KS ci ratio: 2.322781e-03	ci left: 4.460249e-01	ci right 4.470624e-01	k: 1576299	n:3530000
ESYT2   3530000 perm   5191 sec   (680 perm/sec)   p_kst 4.465436e-01   p_cons 3.909348e-05   p_joint 5.382436e-04

Joint ci ratio: 8.976512e-02	ci left: 5.142450e-04	ci right 5.628492e-04	k: 1905	n:3540000
Cons ci ratio: 3.324835e-01	ci left: 3.275064e-05	ci right 4.605626e-05	k: 138	n:3540000
KS ci ratio: 2.319622e-03	ci left: 4.459993e-01	ci right 4.470353e-01	k: 1580671	n:3540000
ESYT2   3540000 perm   5218 sec   (678 perm/sec)   p_kst 4.465172e-01   p_cons 3.898305e-05   p_joint 5.381356e-04

Joint ci ratio: 8.964761e-02	ci left: 5.141733e-04	ci right 5.627038e-04	k: 1910	n:3550000
Cons ci ratio: 3.324835e-01	ci left: 3.265838e-05	ci right 4.592652e-05	k: 138	n:3550000
KS ci ratio: 2.316358e-03	ci left: 4.459988e-01	ci right 4.470334e-01	k: 1585132	n:3550000
ESYT2   3550000 perm   5245 sec   (677 perm/sec)   p_kst 4.465161e-01   p_cons 3.887324e-05   p_joint 5.380282e-04

Joint ci ratio: 8.955396e-02	ci left: 5.138274e-04	ci right 5.622719e-04	k: 1914	n:3560000
Cons ci ratio: 3.312939e-01	ci left: 3.282414e-05	ci right 4.610174e-05	k: 139	n:3560000
KS ci ratio: 2.313020e-03	ci left: 4.460172e-01	ci right 4.470503e-01	k: 1589660	n:3560000
ESYT2   3560000 perm   5273 sec   (675 perm/sec)   p_kst 4.465337e-01   p_cons 3.904494e-05   p_joint 5.376404e-04

Joint ci ratio: 8.946059e-02	ci left: 5.134835e-04	ci right 5.618424e-04	k: 1918	n:3570000
Cons ci ratio: 3.312939e-01	ci left: 3.273220e-05	ci right 4.597260e-05	k: 139	n:3570000
KS ci ratio: 2.309789e-03	ci left: 4.460156e-01	ci right 4.470472e-01	k: 1594117	n:3570000
ESYT2   3570000 perm   5301 sec   (673 perm/sec)   p_kst 4.465314e-01   p_cons 3.893557e-05   p_joint 5.372549e-04

Joint ci ratio: 8.929785e-02	ci left: 5.139608e-04	ci right 5.622720e-04	k: 1925	n:3580000
Cons ci ratio: 3.301170e-01	ci left: 3.289691e-05	ci right 4.614662e-05	k: 140	n:3580000
KS ci ratio: 2.306604e-03	ci left: 4.460070e-01	ci right 4.470372e-01	k: 1598549	n:3580000
ESYT2   3580000 perm   5330 sec   (672 perm/sec)   p_kst 4.465221e-01   p_cons 3.910615e-05   p_joint 5.377095e-04

Joint ci ratio: 8.925157e-02	ci left: 5.130738e-04	ci right 5.612754e-04	k: 1927	n:3590000
Cons ci ratio: 3.289525e-01	ci left: 3.306078e-05	ci right 4.631959e-05	k: 141	n:3590000
KS ci ratio: 2.303402e-03	ci left: 4.460049e-01	ci right 4.470336e-01	k: 1603004	n:3590000
ESYT2   3590000 perm   5358 sec   (670 perm/sec)   p_kst 4.465192e-01   p_cons 3.927577e-05   p_joint 5.367688e-04

Joint ci ratio: 8.969492e-02	ci left: 5.064888e-04	ci right 5.543205e-04	k: 1908	n:3600000
Cons ci ratio: 3.289526e-01	ci left: 3.296894e-05	ci right 4.619093e-05	k: 141	n:3600000
KS ci ratio: 2.300177e-03	ci left: 4.460108e-01	ci right 4.470382e-01	k: 1607488	n:3600000
ESYT2   3600000 perm   5385 sec   (668 perm/sec)   p_kst 4.465244e-01   p_cons 3.916667e-05   p_joint 5.300000e-04

Joint ci ratio: 8.960112e-02	ci left: 5.061690e-04	ci right 5.539179e-04	k: 1912	n:3610000
Cons ci ratio: 3.289526e-01	ci left: 3.287762e-05	ci right 4.606298e-05	k: 141	n:3610000
KS ci ratio: 2.296908e-03	ci left: 4.460289e-01	ci right 4.470548e-01	k: 1612016	n:3610000
ESYT2   3610000 perm   5413 sec   (667 perm/sec)   p_kst 4.465418e-01   p_cons 3.905817e-05   p_joint 5.296399e-04

Joint ci ratio: 8.946092e-02	ci left: 5.063911e-04	ci right 5.540823e-04	k: 1918	n:3620000
Cons ci ratio: 3.278003e-01	ci left: 3.304027e-05	ci right 4.623467e-05	k: 142	n:3620000
KS ci ratio: 2.293749e-03	ci left: 4.460262e-01	ci right 4.470507e-01	k: 1616469	n:3620000
ESYT2   3620000 perm   5441 sec   (665 perm/sec)   p_kst 4.465384e-01   p_cons 3.922652e-05   p_joint 5.298343e-04

Joint ci ratio: 8.946099e-02	ci left: 5.049960e-04	ci right 5.525559e-04	k: 1918	n:3630000
Cons ci ratio: 3.278004e-01	ci left: 3.294925e-05	ci right 4.610730e-05	k: 142	n:3630000
KS ci ratio: 2.290509e-03	ci left: 4.460439e-01	ci right 4.470670e-01	k: 1620996	n:3630000
ESYT2   3630000 perm   5470 sec   (664 perm/sec)   p_kst 4.465554e-01   p_cons 3.911846e-05   p_joint 5.283747e-04

Joint ci ratio: 8.976578e-02	ci left: 5.001172e-04	ci right 5.473865e-04	k: 1905	n:3640000
Cons ci ratio: 3.266602e-01	ci left: 3.311089e-05	ci right 4.627784e-05	k: 143	n:3640000
KS ci ratio: 2.287384e-03	ci left: 4.460395e-01	ci right 4.470612e-01	k: 1625443	n:3640000
ESYT2   3640000 perm   5498 sec   (662 perm/sec)   p_kst 4.465503e-01   p_cons 3.928571e-05   p_joint 5.233516e-04

Joint ci ratio: 8.960138e-02	ci left: 5.006219e-04	ci right 5.478476e-04	k: 1912	n:3650000
Cons ci ratio: 3.255318e-01	ci left: 3.327172e-05	ci right 4.644738e-05	k: 144	n:3650000
KS ci ratio: 2.284302e-03	ci left: 4.460285e-01	ci right 4.470488e-01	k: 1629866	n:3650000
ESYT2   3650000 perm   5526 sec   (661 perm/sec)   p_kst 4.465386e-01   p_cons 3.945205e-05   p_joint 5.238356e-04

Joint ci ratio: 8.946118e-02	ci left: 5.008567e-04	ci right 5.480268e-04	k: 1918	n:3660000
Cons ci ratio: 3.244150e-01	ci left: 3.343175e-05	ci right 4.661590e-05	k: 145	n:3660000
KS ci ratio: 2.281159e-03	ci left: 4.460338e-01	ci right 4.470527e-01	k: 1634348	n:3660000
ESYT2   3660000 perm   5554 sec   (659 perm/sec)   p_kst 4.465432e-01   p_cons 3.961749e-05   p_joint 5.240437e-04

Joint ci ratio: 9.012148e-02	ci left: 4.920337e-04	ci right 5.387330e-04	k: 1890	n:3670000
Cons ci ratio: 3.233096e-01	ci left: 3.359099e-05	ci right 4.678344e-05	k: 146	n:3670000
KS ci ratio: 2.278109e-03	ci left: 4.460213e-01	ci right 4.470388e-01	k: 1638765	n:3670000
ESYT2   3670000 perm   5583 sec   (657 perm/sec)   p_kst 4.465300e-01   p_cons 3.978202e-05   p_joint 5.149864e-04

Joint ci ratio: 9.005011e-02	ci left: 4.914935e-04	ci right 5.381026e-04	k: 1893	n:3680000
Cons ci ratio: 3.222155e-01	ci left: 3.374943e-05	ci right 4.694999e-05	k: 147	n:3680000
KS ci ratio: 2.275116e-03	ci left: 4.459993e-01	ci right 4.470154e-01	k: 1643147	n:3680000
ESYT2   3680000 perm   5611 sec   (656 perm/sec)   p_kst 4.465073e-01   p_cons 3.994565e-05   p_joint 5.144022e-04

Joint ci ratio: 8.993148e-02	ci left: 4.914861e-04	ci right 5.380298e-04	k: 1898	n:3690000
Cons ci ratio: 3.222155e-01	ci left: 3.365797e-05	ci right 4.682275e-05	k: 147	n:3690000
KS ci ratio: 2.272141e-03	ci left: 4.459761e-01	ci right 4.469909e-01	k: 1647524	n:3690000
ESYT2   3690000 perm   5639 sec   (654 perm/sec)   p_kst 4.464835e-01   p_cons 3.983740e-05   p_joint 5.143631e-04

Joint ci ratio: 1.004591e-01	ci left: 3.906831e-04	ci right 4.322674e-04	k: 1521	n:3700000
Cons ci ratio: 2.828943e-01	ci left: 4.456015e-05	ci right 5.948421e-05	k: 191	n:3700000
KS ci ratio: 2.269089e-03	ci left: 4.459723e-01	ci right 4.469856e-01	k: 1651972	n:3700000
ESYT2   3700000 perm   5668 sec   (653 perm/sec)   p_kst 4.464789e-01   p_cons 5.162162e-05   p_joint 4.110811e-04

Joint ci ratio: 1.002945e-01	ci left: 3.909439e-04	ci right 4.324838e-04	k: 1526	n:3710000
Cons ci ratio: 2.821604e-01	ci left: 4.469049e-05	ci right 5.961247e-05	k: 192	n:3710000
KS ci ratio: 2.266052e-03	ci left: 4.459679e-01	ci right 4.469799e-01	k: 1656418	n:3710000
ESYT2   3710000 perm   5696 sec   (651 perm/sec)   p_kst 4.464739e-01   p_cons 5.175202e-05   p_joint 4.113208e-04

Joint ci ratio: 1.000980e-01	ci left: 3.914655e-04	ci right 4.329745e-04	k: 1532	n:3720000
Cons ci ratio: 2.814322e-01	ci left: 4.482017e-05	ci right 5.973998e-05	k: 193	n:3720000
KS ci ratio: 2.263006e-03	ci left: 4.459684e-01	ci right 4.469790e-01	k: 1660882	n:3720000
ESYT2   3720000 perm   5725 sec   (650 perm/sec)   p_kst 4.464737e-01   p_cons 5.188172e-05   p_joint 4.118280e-04

Joint ci ratio: 9.987021e-02	ci left: 3.922457e-04	ci right 4.337373e-04	k: 1539	n:3730000
Cons ci ratio: 2.814322e-01	ci left: 4.470001e-05	ci right 5.957982e-05	k: 193	n:3730000
KS ci ratio: 2.260029e-03	ci left: 4.459563e-01	ci right 4.469655e-01	k: 1665299	n:3730000
ESYT2   3730000 perm   5754 sec   (648 perm/sec)   p_kst 4.464609e-01   p_cons 5.174263e-05   p_joint 4.126005e-04

Joint ci ratio: 1.004924e-01	ci left: 3.862440e-04	ci right 4.273702e-04	k: 1520	n:3740000
Cons ci ratio: 2.807097e-01	ci left: 4.482903e-05	ci right 5.970669e-05	k: 194	n:3740000
KS ci ratio: 2.257078e-03	ci left: 4.459410e-01	ci right 4.469489e-01	k: 1669704	n:3740000
ESYT2   3740000 perm   5783 sec   (647 perm/sec)   p_kst 4.464449e-01   p_cons 5.187166e-05   p_joint 4.064171e-04

Joint ci ratio: 1.003605e-01	ci left: 3.862539e-04	ci right 4.273240e-04	k: 1524	n:3750000
Cons ci ratio: 2.807097e-01	ci left: 4.470948e-05	ci right 5.954748e-05	k: 194	n:3750000
KS ci ratio: 2.254044e-03	ci left: 4.459466e-01	ci right 4.469532e-01	k: 1674187	n:3750000
ESYT2   3750000 perm   5812 sec   (645 perm/sec)   p_kst 4.464499e-01   p_cons 5.173333e-05   p_joint 4.064000e-04

Joint ci ratio: 1.001636e-01	ci left: 3.867823e-04	ci right 4.278232e-04	k: 1530	n:3760000
Cons ci ratio: 2.807097e-01	ci left: 4.459057e-05	ci right 5.938911e-05	k: 194	n:3760000
KS ci ratio: 2.251032e-03	ci left: 4.459501e-01	ci right 4.469553e-01	k: 1678662	n:3760000
ESYT2   3760000 perm   5841 sec   (644 perm/sec)   p_kst 4.464527e-01   p_cons 5.159574e-05   p_joint 4.069149e-04

Joint ci ratio: 1.001310e-01	ci left: 3.860150e-04	ci right 4.269603e-04	k: 1531	n:3770000
Cons ci ratio: 2.807097e-01	ci left: 4.447230e-05	ci right 5.923158e-05	k: 194	n:3770000
KS ci ratio: 2.248102e-03	ci left: 4.459381e-01	ci right 4.469420e-01	k: 1683079	n:3770000
ESYT2   3770000 perm   5870 sec   (642 perm/sec)   p_kst 4.464401e-01   p_cons 5.145889e-05   p_joint 4.061008e-04

Joint ci ratio: 1.000331e-01	ci left: 3.857676e-04	ci right 4.266443e-04	k: 1534	n:3780000
Cons ci ratio: 2.807098e-01	ci left: 4.435464e-05	ci right 5.907488e-05	k: 194	n:3780000
KS ci ratio: 2.245106e-03	ci left: 4.459432e-01	ci right 4.469458e-01	k: 1687560	n:3780000
ESYT2   3780000 perm   5899 sec   (641 perm/sec)   p_kst 4.464444e-01   p_cons 5.132275e-05   p_joint 4.058201e-04

Joint ci ratio: 1.000005e-01	ci left: 3.850069e-04	ci right 4.257891e-04	k: 1535	n:3790000
Cons ci ratio: 2.807098e-01	ci left: 4.423761e-05	ci right 5.891901e-05	k: 194	n:3790000
KS ci ratio: 2.242157e-03	ci left: 4.459406e-01	ci right 4.469418e-01	k: 1692012	n:3790000
ESYT2   3790000 perm   5928 sec   (639 perm/sec)   p_kst 4.464412e-01   p_cons 5.118734e-05   p_joint 4.050132e-04

Joint ci ratio: 1.017726e-01	ci left: 3.703981e-04	ci right 4.103696e-04	k: 1482	n:3800000
Cons ci ratio: 2.807098e-01	ci left: 4.412120e-05	ci right 5.876396e-05	k: 194	n:3800000
KS ci ratio: 2.239129e-03	ci left: 4.459580e-01	ci right 4.469579e-01	k: 1696540	n:3800000
ESYT2   3800000 perm   5958 sec   (638 perm/sec)   p_kst 4.464579e-01   p_cons 5.105263e-05   p_joint 3.900000e-04

Joint ci ratio: 1.018757e-01	ci left: 3.686586e-04	ci right 4.084851e-04	k: 1479	n:3810000
Cons ci ratio: 2.799928e-01	ci left: 4.424941e-05	ci right 5.889059e-05	k: 195	n:3810000
KS ci ratio: 2.236220e-03	ci left: 4.459517e-01	ci right 4.469503e-01	k: 1700978	n:3810000
ESYT2   3810000 perm   5987 sec   (636 perm/sec)   p_kst 4.464509e-01   p_cons 5.118110e-05   p_joint 3.881890e-04

Joint ci ratio: 1.017383e-01	ci left: 3.687140e-04	ci right 4.084895e-04	k: 1483	n:3820000
Cons ci ratio: 2.792812e-01	ci left: 4.437700e-05	ci right 5.901652e-05	k: 196	n:3820000
KS ci ratio: 2.233356e-03	ci left: 4.459380e-01	ci right 4.469353e-01	k: 1705388	n:3820000
ESYT2   3820000 perm   6017 sec   (635 perm/sec)   p_kst 4.464366e-01   p_cons 5.130890e-05   p_joint 3.882199e-04

Joint ci ratio: 1.019448e-01	ci left: 3.662246e-04	ci right 4.058165e-04	k: 1477	n:3830000
Cons ci ratio: 2.792812e-01	ci left: 4.426113e-05	ci right 5.886243e-05	k: 196	n:3830000
KS ci ratio: 2.230355e-03	ci left: 4.459571e-01	ci right 4.469531e-01	k: 1709923	n:3830000
ESYT2   3830000 perm   6047 sec   (633 perm/sec)   p_kst 4.464551e-01   p_cons 5.117493e-05   p_joint 3.856397e-04

Joint ci ratio: 1.017385e-01	ci left: 3.667936e-04	ci right 4.063620e-04	k: 1483	n:3840000
Cons ci ratio: 2.792812e-01	ci left: 4.414587e-05	ci right 5.870914e-05	k: 196	n:3840000
KS ci ratio: 2.227375e-03	ci left: 4.459743e-01	ci right 4.469690e-01	k: 1714451	n:3840000
ESYT2   3840000 perm   6077 sec   (632 perm/sec)   p_kst 4.464716e-01   p_cons 5.104167e-05   p_joint 3.861979e-04

Joint ci ratio: 1.016016e-01	ci left: 3.668534e-04	ci right 4.063719e-04	k: 1487	n:3850000
Cons ci ratio: 2.792813e-01	ci left: 4.403121e-05	ci right 5.855665e-05	k: 196	n:3850000
KS ci ratio: 2.224511e-03	ci left: 4.459680e-01	ci right 4.469614e-01	k: 1718889	n:3850000
ESYT2   3850000 perm   6107 sec   (630 perm/sec)   p_kst 4.464647e-01   p_cons 5.090909e-05   p_joint 3.862338e-04

Joint ci ratio: 1.013634e-01	ci left: 3.676705e-04	ci right 4.071786e-04	k: 1494	n:3860000
Cons ci ratio: 2.792813e-01	ci left: 4.391713e-05	ci right 5.840495e-05	k: 196	n:3860000
KS ci ratio: 2.221564e-03	ci left: 4.459830e-01	ci right 4.469751e-01	k: 1723409	n:3860000
ESYT2   3860000 perm   6137 sec   (629 perm/sec)   p_kst 4.464790e-01   p_cons 5.077720e-05   p_joint 3.870466e-04

Joint ci ratio: 1.012619e-01	ci left: 3.674760e-04	ci right 4.069213e-04	k: 1497	n:3870000
Cons ci ratio: 2.785751e-01	ci left: 4.404398e-05	ci right 5.853046e-05	k: 197	n:3870000
KS ci ratio: 2.218764e-03	ci left: 4.459674e-01	ci right 4.469582e-01	k: 1727811	n:3870000
ESYT2   3870000 perm   6166 sec   (628 perm/sec)   p_kst 4.464628e-01   p_cons 5.090439e-05   p_joint 3.868217e-04

Joint ci ratio: 1.011944e-01	ci left: 3.670313e-04	ci right 4.064010e-04	k: 1499	n:3880000
Cons ci ratio: 2.785751e-01	ci left: 4.393046e-05	ci right 5.837961e-05	k: 197	n:3880000
KS ci ratio: 2.215857e-03	ci left: 4.459785e-01	ci right 4.469680e-01	k: 1732316	n:3880000
ESYT2   3880000 perm   6197 sec   (626 perm/sec)   p_kst 4.464732e-01   p_cons 5.077320e-05   p_joint 3.863402e-04

Joint ci ratio: 1.011270e-01	ci left: 3.665889e-04	ci right 4.058834e-04	k: 1501	n:3890000
Cons ci ratio: 2.785751e-01	ci left: 4.381753e-05	ci right 5.822953e-05	k: 197	n:3890000
KS ci ratio: 2.212923e-03	ci left: 4.459977e-01	ci right 4.469860e-01	k: 1736853	n:3890000
ESYT2   3890000 perm   6226 sec   (625 perm/sec)   p_kst 4.464918e-01   p_cons 5.064267e-05   p_joint 3.858612e-04

Joint ci ratio: 1.010262e-01	ci left: 3.663987e-04	ci right 4.056314e-04	k: 1504	n:3900000
Cons ci ratio: 2.771787e-01	ci left: 4.418227e-05	ci right 5.862869e-05	k: 199	n:3900000
KS ci ratio: 2.210074e-03	ci left: 4.460006e-01	ci right 4.469877e-01	k: 1741327	n:3900000
ESYT2   3900000 perm   6256 sec   (623 perm/sec)   p_kst 4.464941e-01   p_cons 5.102564e-05   p_joint 3.856410e-04

Joint ci ratio: 1.008922e-01	ci left: 3.664588e-04	ci right 4.056428e-04	k: 1508	n:3910000
Cons ci ratio: 2.764883e-01	ci left: 4.430728e-05	ci right 5.875220e-05	k: 200	n:3910000
KS ci ratio: 2.207261e-03	ci left: 4.459980e-01	ci right 4.469837e-01	k: 1745779	n:3910000
ESYT2   3910000 perm   6286 sec   (622 perm/sec)   p_kst 4.464908e-01   p_cons 5.115090e-05   p_joint 3.856777e-04

Joint ci ratio: 1.007921e-01	ci left: 3.662700e-04	ci right 4.053926e-04	k: 1511	n:3920000
Cons ci ratio: 2.764884e-01	ci left: 4.419425e-05	ci right 5.860232e-05	k: 200	n:3920000
KS ci ratio: 2.204453e-03	ci left: 4.459966e-01	ci right 4.469811e-01	k: 1750236	n:3920000
ESYT2   3920000 perm   6316 sec   (621 perm/sec)   p_kst 4.464888e-01   p_cons 5.102041e-05   p_joint 3.854592e-04

Joint ci ratio: 1.006922e-01	ci left: 3.660821e-04	ci right 4.051436e-04	k: 1514	n:3930000
Cons ci ratio: 2.764884e-01	ci left: 4.408179e-05	ci right 5.845321e-05	k: 200	n:3930000
KS ci ratio: 2.201639e-03	ci left: 4.459987e-01	ci right 4.469820e-01	k: 1754707	n:3930000
ESYT2   3930000 perm   6346 sec   (619 perm/sec)   p_kst 4.464903e-01   p_cons 5.089059e-05   p_joint 3.852417e-04

Joint ci ratio: 1.005927e-01	ci left: 3.658952e-04	ci right 4.048959e-04	k: 1517	n:3940000
Cons ci ratio: 2.764884e-01	ci left: 4.396991e-05	ci right 5.830485e-05	k: 200	n:3940000
KS ci ratio: 2.198803e-03	ci left: 4.460085e-01	ci right 4.469905e-01	k: 1759208	n:3940000
ESYT2   3940000 perm   6377 sec   (618 perm/sec)   p_kst 4.464995e-01   p_cons 5.076142e-05   p_joint 3.850254e-04

Joint ci ratio: 1.004274e-01	ci left: 3.662029e-04	ci right 4.051685e-04	k: 1522	n:3950000
Cons ci ratio: 2.764884e-01	ci left: 4.385859e-05	ci right 5.815724e-05	k: 200	n:3950000
KS ci ratio: 2.196041e-03	ci left: 4.460038e-01	ci right 4.469846e-01	k: 1763652	n:3950000
ESYT2   3950000 perm   6407 sec   (616 perm/sec)   p_kst 4.464942e-01   p_cons 5.063291e-05   p_joint 3.853165e-04

Joint ci ratio: 1.003287e-01	ci left: 3.660167e-04	ci right 4.049220e-04	k: 1525	n:3960000
Cons ci ratio: 2.764884e-01	ci left: 4.374784e-05	ci right 5.801038e-05	k: 200	n:3960000
KS ci ratio: 2.193214e-03	ci left: 4.460163e-01	ci right 4.469959e-01	k: 1768164	n:3960000
ESYT2   3960000 perm   6438 sec   (615 perm/sec)   p_kst 4.465061e-01   p_cons 5.050505e-05   p_joint 3.851010e-04

Joint ci ratio: 1.002302e-01	ci left: 3.658315e-04	ci right 4.046766e-04	k: 1528	n:3970000
Cons ci ratio: 2.758032e-01	ci left: 4.387209e-05	ci right 5.813355e-05	k: 201	n:3970000
KS ci ratio: 2.190476e-03	ci left: 4.460111e-01	ci right 4.469894e-01	k: 1772606	n:3970000
ESYT2   3970000 perm   6468 sec   (614 perm/sec)   p_kst 4.465003e-01   p_cons 5.062972e-05   p_joint 3.848866e-04

Joint ci ratio: 1.000994e-01	ci left: 3.658921e-04	ci right 4.046900e-04	k: 1532	n:3980000
Cons ci ratio: 2.737776e-01	ci left: 4.446370e-05	ci right 5.879305e-05	k: 204	n:3980000
KS ci ratio: 2.187702e-03	ci left: 4.460163e-01	ci right 4.469933e-01	k: 1777089	n:3980000
ESYT2   3980000 perm   6499 sec   (612 perm/sec)   p_kst 4.465048e-01   p_cons 5.125628e-05   p_joint 3.849246e-04

Joint ci ratio: 1.000016e-01	ci left: 3.657082e-04	ci right 4.044465e-04	k: 1535	n:3990000
Cons ci ratio: 2.731123e-01	ci left: 4.458571e-05	ci right 5.891347e-05	k: 205	n:3990000
KS ci ratio: 2.185026e-03	ci left: 4.460019e-01	ci right 4.469777e-01	k: 1781494	n:3990000
ESYT2   3990000 perm   6530 sec   (611 perm/sec)   p_kst 4.464897e-01   p_cons 5.137845e-05   p_joint 3.847118e-04

Joint ci ratio: 1.002304e-01	ci left: 3.630877e-04	ci right 4.016416e-04	k: 1528	n:4000000
Cons ci ratio: 2.731123e-01	ci left: 4.447425e-05	ci right 5.876619e-05	k: 205	n:4000000
KS ci ratio: 2.182198e-03	ci left: 4.460240e-01	ci right 4.469986e-01	k: 1786045	n:4000000
ESYT2   4000000 perm   6561 sec   (610 perm/sec)   p_kst 4.465113e-01   p_cons 5.125000e-05   p_joint 3.820000e-04

Joint ci ratio: 1.000342e-01	ci left: 3.636410e-04	ci right 4.021737e-04	k: 1534	n:4010000
Cons ci ratio: 2.724518e-01	ci left: 4.459566e-05	ci right 5.888603e-05	k: 206	n:4010000
KS ci ratio: 2.179467e-03	ci left: 4.460263e-01	ci right 4.469997e-01	k: 1790517	n:4010000
ESYT2   4010000 perm   6592 sec   (608 perm/sec)   p_kst 4.465130e-01   p_cons 5.137157e-05   p_joint 3.825436e-04

Joint ci ratio: 9.983928e-02	ci left: 3.641917e-04	ci right 4.027031e-04	k: 1540	n:4020000
Cons ci ratio: 2.724518e-01	ci left: 4.448473e-05	ci right 5.873954e-05	k: 206	n:4020000
KS ci ratio: 2.176674e-03	ci left: 4.460453e-01	ci right 4.470175e-01	k: 1795056	n:4020000
ESYT2   4020000 perm   6623 sec   (607 perm/sec)   p_kst 4.465313e-01   p_cons 5.124378e-05   p_joint 3.830846e-04

Joint ci ratio: 9.967769e-02	ci left: 3.644977e-04	ci right 4.029754e-04	k: 1545	n:4030000
Cons ci ratio: 2.724518e-01	ci left: 4.437434e-05	ci right 5.859379e-05	k: 206	n:4030000
KS ci ratio: 2.173966e-03	ci left: 4.460473e-01	ci right 4.470183e-01	k: 1799527	n:4030000
ESYT2   4030000 perm   6654 sec   (606 perm/sec)   p_kst 4.465328e-01   p_cons 5.111663e-05   p_joint 3.833747e-04

Joint ci ratio: 9.977462e-02	ci left: 3.628714e-04	ci right 4.012169e-04	k: 1542	n:4040000
Cons ci ratio: 2.717961e-01	ci left: 4.449514e-05	ci right 5.871313e-05	k: 207	n:4040000
KS ci ratio: 2.171310e-03	ci left: 4.460397e-01	ci right 4.470094e-01	k: 1803959	n:4040000
ESYT2   4040000 perm   6686 sec   (604 perm/sec)   p_kst 4.465245e-01   p_cons 5.123762e-05   p_joint 3.816832e-04

Joint ci ratio: 9.961334e-02	ci left: 3.631793e-04	ci right 4.014916e-04	k: 1547	n:4050000
Cons ci ratio: 2.711450e-01	ci left: 4.461539e-05	ci right 5.883183e-05	k: 208	n:4050000
KS ci ratio: 2.168695e-03	ci left: 4.460249e-01	ci right 4.469935e-01	k: 1808362	n:4050000
ESYT2   4050000 perm   6718 sec   (603 perm/sec)   p_kst 4.465091e-01   p_cons 5.135802e-05   p_joint 3.819753e-04

Joint ci ratio: 9.945284e-02	ci left: 3.634856e-04	ci right 4.017649e-04	k: 1552	n:4060000
Cons ci ratio: 2.704987e-01	ci left: 4.473508e-05	ci right 5.894992e-05	k: 209	n:4060000
KS ci ratio: 2.166041e-03	ci left: 4.460213e-01	ci right 4.469887e-01	k: 1812810	n:4060000
ESYT2   4060000 perm   6750 sec   (602 perm/sec)   p_kst 4.465049e-01   p_cons 5.147783e-05   p_joint 3.822660e-04

Joint ci ratio: 9.926126e-02	ci left: 3.640301e-04	ci right 4.022885e-04	k: 1558	n:4070000
Cons ci ratio: 2.704987e-01	ci left: 4.462517e-05	ci right 5.880508e-05	k: 209	n:4070000
KS ci ratio: 2.163435e-03	ci left: 4.460088e-01	ci right 4.469750e-01	k: 1817222	n:4070000
ESYT2   4070000 perm   6781 sec   (600 perm/sec)   p_kst 4.464919e-01   p_cons 5.135135e-05   p_joint 3.828010e-04

Joint ci ratio: 1.009600e-01	ci left: 3.507117e-04	ci right 3.882386e-04	k: 1506	n:4080000
Cons ci ratio: 2.704987e-01	ci left: 4.451579e-05	ci right 5.866095e-05	k: 209	n:4080000
KS ci ratio: 2.160929e-03	ci left: 4.459759e-01	ci right 4.469409e-01	k: 1821550	n:4080000
ESYT2   4080000 perm   6812 sec   (599 perm/sec)   p_kst 4.464583e-01   p_cons 5.122549e-05   p_joint 3.691176e-04

Joint ci ratio: 1.008596e-01	ci left: 3.505692e-04	ci right 3.880414e-04	k: 1509	n:4090000
Cons ci ratio: 2.704987e-01	ci left: 4.440695e-05	ci right 5.851752e-05	k: 209	n:4090000
KS ci ratio: 2.158368e-03	ci left: 4.459575e-01	ci right 4.469213e-01	k: 1825937	n:4090000
ESYT2   4090000 perm   6844 sec   (598 perm/sec)   p_kst 4.464394e-01   p_cons 5.110024e-05   p_joint 3.689487e-04

Joint ci ratio: 1.008597e-01	ci left: 3.497142e-04	ci right 3.870949e-04	k: 1509	n:4100000
Cons ci ratio: 2.704987e-01	ci left: 4.429864e-05	ci right 5.837480e-05	k: 209	n:4100000
KS ci ratio: 2.155657e-03	ci left: 4.459758e-01	ci right 4.469384e-01	k: 1830474	n:4100000
ESYT2   4100000 perm   6876 sec   (596 perm/sec)   p_kst 4.464571e-01   p_cons 5.097561e-05   p_joint 3.680488e-04

Joint ci ratio: 1.007596e-01	ci left: 3.495748e-04	ci right 3.869014e-04	k: 1512	n:4110000
Cons ci ratio: 2.698570e-01	ci left: 4.441769e-05	ci right 5.849251e-05	k: 210	n:4110000
KS ci ratio: 2.152994e-03	ci left: 4.459855e-01	ci right 4.469470e-01	k: 1834976	n:4110000
ESYT2   4110000 perm   6907 sec   (595 perm/sec)   p_kst 4.464662e-01   p_cons 5.109489e-05   p_joint 3.678832e-04

Joint ci ratio: 1.005935e-01	ci left: 3.499093e-04	ci right 3.872065e-04	k: 1517	n:4120000
Cons ci ratio: 2.698570e-01	ci left: 4.430988e-05	ci right 5.835054e-05	k: 210	n:4120000
KS ci ratio: 2.150350e-03	ci left: 4.459927e-01	ci right 4.469530e-01	k: 1839468	n:4120000
ESYT2   4120000 perm   6940 sec   (594 perm/sec)   p_kst 4.464728e-01   p_cons 5.097087e-05   p_joint 3.682039e-04

Joint ci ratio: 1.002638e-01	ci left: 3.514226e-04	ci right 3.887510e-04	k: 1527	n:4130000
Cons ci ratio: 2.685870e-01	ci left: 4.465417e-05	ci right 5.872613e-05	k: 212	n:4130000
KS ci ratio: 2.147741e-03	ci left: 4.459943e-01	ci right 4.469535e-01	k: 1843937	n:4130000
ESYT2   4130000 perm   6971 sec   (592 perm/sec)   p_kst 4.464738e-01   p_cons 5.133172e-05   p_joint 3.697337e-04

Joint ci ratio: 1.001655e-01	ci left: 3.512802e-04	ci right 3.885548e-04	k: 1530	n:4140000
Cons ci ratio: 2.685870e-01	ci left: 4.454631e-05	ci right 5.858428e-05	k: 212	n:4140000
KS ci ratio: 2.145101e-03	ci left: 4.460051e-01	ci right 4.469631e-01	k: 1848444	n:4140000
ESYT2   4140000 perm   7003 sec   (591 perm/sec)   p_kst 4.464841e-01   p_cons 5.120773e-05   p_joint 3.695652e-04

Joint ci ratio: 1.001328e-01	ci left: 3.506687e-04	ci right 3.878655e-04	k: 1531	n:4150000
Cons ci ratio: 2.685870e-01	ci left: 4.443897e-05	ci right 5.844311e-05	k: 212	n:4150000
KS ci ratio: 2.142471e-03	ci left: 4.460158e-01	ci right 4.469727e-01	k: 1852951	n:4150000
ESYT2   4150000 perm   7035 sec   (590 perm/sec)   p_kst 4.464942e-01   p_cons 5.108434e-05   p_joint 3.689157e-04

Joint ci ratio: 1.000349e-01	ci left: 3.505289e-04	ci right 3.876724e-04	k: 1534	n:4160000
Cons ci ratio: 2.679588e-01	ci left: 4.455636e-05	ci right 5.855913e-05	k: 213	n:4160000
KS ci ratio: 2.139909e-03	ci left: 4.460131e-01	ci right 4.469687e-01	k: 1857402	n:4160000
ESYT2   4160000 perm   7068 sec   (589 perm/sec)   p_kst 4.464909e-01   p_cons 5.120192e-05   p_joint 3.687500e-04

Joint ci ratio: 9.996985e-02	ci left: 3.501559e-04	ci right 3.872343e-04	k: 1536	n:4170000
Cons ci ratio: 2.679588e-01	ci left: 4.444951e-05	ci right 5.841870e-05	k: 213	n:4170000
KS ci ratio: 2.137284e-03	ci left: 4.460271e-01	ci right 4.469816e-01	k: 1861923	n:4170000
ESYT2   4170000 perm   7099 sec   (587 perm/sec)   p_kst 4.465043e-01   p_cons 5.107914e-05   p_joint 3.683453e-04

Joint ci ratio: 9.990489e-02	ci left: 3.497847e-04	ci right 3.867983e-04	k: 1538	n:4180000
Cons ci ratio: 2.679588e-01	ci left: 4.434317e-05	ci right 5.827895e-05	k: 213	n:4180000
KS ci ratio: 2.134747e-03	ci left: 4.460226e-01	ci right 4.469760e-01	k: 1866367	n:4180000
ESYT2   4180000 perm   7131 sec   (586 perm/sec)   p_kst 4.464993e-01   p_cons 5.095694e-05   p_joint 3.679426e-04

Joint ci ratio: 1.005939e-01	ci left: 3.440636e-04	ci right 3.807377e-04	k: 1517	n:4190000
Cons ci ratio: 2.673349e-01	ci left: 4.445999e-05	ci right 5.839450e-05	k: 214	n:4190000
KS ci ratio: 2.132235e-03	ci left: 4.460146e-01	ci right 4.469669e-01	k: 1870796	n:4190000
ESYT2   4190000 perm   7163 sec   (585 perm/sec)   p_kst 4.464907e-01   p_cons 5.107399e-05   p_joint 3.620525e-04

Joint ci ratio: 1.005277e-01	ci left: 3.437086e-04	ci right 3.803193e-04	k: 1519	n:4200000
Cons ci ratio: 2.673349e-01	ci left: 4.435414e-05	ci right 5.825546e-05	k: 214	n:4200000
KS ci ratio: 2.129675e-03	ci left: 4.460200e-01	ci right 4.469711e-01	k: 1875281	n:4200000
ESYT2   4200000 perm   7196 sec   (584 perm/sec)   p_kst 4.464955e-01   p_cons 5.095238e-05   p_joint 3.616667e-04

Joint ci ratio: 1.004947e-01	ci left: 3.431237e-04	ci right 3.796595e-04	k: 1520	n:4210000
Cons ci ratio: 2.673349e-01	ci left: 4.424878e-05	ci right 5.811709e-05	k: 214	n:4210000
KS ci ratio: 2.127179e-03	ci left: 4.460125e-01	ci right 4.469624e-01	k: 1879712	n:4210000
ESYT2   4210000 perm   7229 sec   (582 perm/sec)   p_kst 4.464874e-01   p_cons 5.083135e-05   p_joint 3.610451e-04

Joint ci ratio: 1.004287e-01	ci left: 3.427726e-04	ci right 3.792457e-04	k: 1522	n:4220000
Cons ci ratio: 2.667154e-01	ci left: 4.436503e-05	ci right 5.823216e-05	k: 215	n:4220000
KS ci ratio: 2.124673e-03	ci left: 4.460093e-01	ci right 4.469581e-01	k: 1884161	n:4220000
ESYT2   4220000 perm   7261 sec   (581 perm/sec)   p_kst 4.464836e-01   p_cons 5.094787e-05   p_joint 3.606635e-04

Joint ci ratio: 1.007602e-01	ci left: 3.396577e-04	ci right 3.759256e-04	k: 1512	n:4230000
Cons ci ratio: 2.661001e-01	ci left: 4.448077e-05	ci right 5.834665e-05	k: 216	n:4230000
KS ci ratio: 2.122088e-03	ci left: 4.460266e-01	ci right 4.469744e-01	k: 1888697	n:4230000
ESYT2   4230000 perm   7294 sec   (580 perm/sec)   p_kst 4.465005e-01   p_cons 5.106383e-05   p_joint 3.574468e-04

Joint ci ratio: 1.013991e-01	ci left: 3.344887e-04	ci right 3.704447e-04	k: 1493	n:4240000
Cons ci ratio: 2.654890e-01	ci left: 4.459600e-05	ci right 5.846057e-05	k: 217	n:4240000
KS ci ratio: 2.119640e-03	ci left: 4.460142e-01	ci right 4.469608e-01	k: 1893107	n:4240000
ESYT2   4240000 perm   7327 sec   (579 perm/sec)   p_kst 4.464875e-01   p_cons 5.117925e-05   p_joint 3.521226e-04

Joint ci ratio: 1.013313e-01	ci left: 3.341603e-04	ci right 3.700555e-04	k: 1495	n:4250000
Cons ci ratio: 2.654891e-01	ci left: 4.449107e-05	ci right 5.832302e-05	k: 217	n:4250000
KS ci ratio: 2.117085e-03	ci left: 4.460287e-01	ci right 4.469742e-01	k: 1897631	n:4250000
ESYT2   4250000 perm   7360 sec   (577 perm/sec)   p_kst 4.465014e-01   p_cons 5.105882e-05   p_joint 3.517647e-04

Joint ci ratio: 1.012299e-01	ci left: 3.340623e-04	ci right 3.699089e-04	k: 1498	n:4260000
Cons ci ratio: 2.654891e-01	ci left: 4.438663e-05	ci right 5.818611e-05	k: 217	n:4260000
KS ci ratio: 2.114645e-03	ci left: 4.460185e-01	ci right 4.469628e-01	k: 1902050	n:4260000
ESYT2   4260000 perm   7392 sec   (576 perm/sec)   p_kst 4.464906e-01   p_cons 5.093897e-05   p_joint 3.516432e-04

Joint ci ratio: 1.010951e-01	ci left: 3.341930e-04	ci right 3.700031e-04	k: 1502	n:4270000
Cons ci ratio: 2.654891e-01	ci left: 4.428268e-05	ci right 5.804984e-05	k: 217	n:4270000
KS ci ratio: 2.112199e-03	ci left: 4.460115e-01	ci right 4.469548e-01	k: 1906483	n:4270000
ESYT2   4270000 perm   7425 sec   (575 perm/sec)   p_kst 4.464831e-01   p_cons 5.081967e-05   p_joint 3.517564e-04

Joint ci ratio: 1.009273e-01	ci left: 3.345509e-04	ci right 3.703363e-04	k: 1507	n:4280000
Cons ci ratio: 2.654891e-01	ci left: 4.417921e-05	ci right 5.791421e-05	k: 217	n:4280000
KS ci ratio: 2.109755e-03	ci left: 4.460063e-01	ci right 4.469485e-01	k: 1910923	n:4280000
ESYT2   4280000 perm   7457 sec   (574 perm/sec)   p_kst 4.464773e-01   p_cons 5.070093e-05   p_joint 3.521028e-04

Joint ci ratio: 1.008939e-01	ci left: 3.339983e-04	ci right 3.697121e-04	k: 1508	n:4290000
Cons ci ratio: 2.648823e-01	ci left: 4.429383e-05	ci right 5.802777e-05	k: 218	n:4290000
KS ci ratio: 2.107289e-03	ci left: 4.460081e-01	ci right 4.469491e-01	k: 1915393	n:4290000
ESYT2   4290000 perm   7490 sec   (573 perm/sec)   p_kst 4.464786e-01   p_cons 5.081585e-05   p_joint 3.515152e-04

Joint ci ratio: 1.008940e-01	ci left: 3.332215e-04	ci right 3.688523e-04	k: 1508	n:4300000
Cons ci ratio: 2.648823e-01	ci left: 4.419083e-05	ci right 5.789283e-05	k: 218	n:4300000
KS ci ratio: 2.104875e-03	ci left: 4.459998e-01	ci right 4.469398e-01	k: 1919820	n:4300000
ESYT2   4300000 perm   7523 sec   (572 perm/sec)   p_kst 4.464698e-01   p_cons 5.069767e-05   p_joint 3.506977e-04

Joint ci ratio: 1.006939e-01	ci left: 3.338054e-04	ci right 3.694236e-04	k: 1514	n:4310000
Cons ci ratio: 2.636809e-01	ci left: 4.452159e-05	ci right 5.825321e-05	k: 220	n:4310000
KS ci ratio: 2.102401e-03	ci left: 4.460076e-01	ci right 4.469465e-01	k: 1924316	n:4310000
ESYT2   4310000 perm   7556 sec   (570 perm/sec)   p_kst 4.464770e-01   p_cons 5.104408e-05   p_joint 3.512761e-04

Joint ci ratio: 1.006608e-01	ci left: 3.332584e-04	ci right 3.688058e-04	k: 1515	n:4320000
Cons ci ratio: 2.630864e-01	ci left: 4.463473e-05	ci right 5.836510e-05	k: 221	n:4320000
KS ci ratio: 2.099942e-03	ci left: 4.460138e-01	ci right 4.469516e-01	k: 1928805	n:4320000
ESYT2   4320000 perm   7590 sec   (569 perm/sec)   p_kst 4.464826e-01   p_cons 5.115741e-05   p_joint 3.506944e-04

Joint ci ratio: 1.005282e-01	ci left: 3.333893e-04	ci right 3.689011e-04	k: 1519	n:4330000
Cons ci ratio: 2.630864e-01	ci left: 4.453165e-05	ci right 5.823030e-05	k: 221	n:4330000
KS ci ratio: 2.097504e-03	ci left: 4.460171e-01	ci right 4.469538e-01	k: 1933282	n:4330000
ESYT2   4330000 perm   7623 sec   (568 perm/sec)   p_kst 4.464855e-01   p_cons 5.103926e-05   p_joint 3.508083e-04

Joint ci ratio: 1.018094e-01	ci left: 3.240868e-04	ci right 3.590740e-04	k: 1481	n:4340000
Cons ci ratio: 2.624958e-01	ci left: 4.464428e-05	ci right 5.834169e-05	k: 222	n:4340000
KS ci ratio: 2.095120e-03	ci left: 4.460096e-01	ci right 4.469453e-01	k: 1937712	n:4340000
ESYT2   4340000 perm   7656 sec   (567 perm/sec)   p_kst 4.464774e-01   p_cons 5.115207e-05   p_joint 3.412442e-04

Joint ci ratio: 1.016380e-01	ci left: 3.244620e-04	ci right 3.594272e-04	k: 1486	n:4350000
Cons ci ratio: 2.619092e-01	ci left: 4.475643e-05	ci right 5.845253e-05	k: 223	n:4350000
KS ci ratio: 2.092778e-03	ci left: 4.459944e-01	ci right 4.469289e-01	k: 1942108	n:4350000
ESYT2   4350000 perm   7690 sec   (566 perm/sec)   p_kst 4.464616e-01   p_cons 5.126437e-05   p_joint 3.416092e-04

Joint ci ratio: 1.016723e-01	ci left: 3.234942e-04	ci right 3.583676e-04	k: 1485	n:4360000
Cons ci ratio: 2.613266e-01	ci left: 4.486809e-05	ci right 5.856283e-05	k: 224	n:4360000
KS ci ratio: 2.090410e-03	ci left: 4.459870e-01	ci right 4.469204e-01	k: 1946538	n:4360000
ESYT2   4360000 perm   7723 sec   (565 perm/sec)   p_kst 4.464537e-01   p_cons 5.137615e-05   p_joint 3.405963e-04

Joint ci ratio: 1.015016e-01	ci left: 3.238691e-04	ci right 3.587208e-04	k: 1490	n:4370000
Cons ci ratio: 2.613266e-01	ci left: 4.476542e-05	ci right 5.842882e-05	k: 224	n:4370000
KS ci ratio: 2.088069e-03	ci left: 4.459750e-01	ci right 4.469074e-01	k: 1950948	n:4370000
ESYT2   4370000 perm   7757 sec   (563 perm/sec)   p_kst 4.464412e-01   p_cons 5.125858e-05   p_joint 3.409611e-04

Joint ci ratio: 1.013658e-01	ci left: 3.240197e-04	ci right 3.588382e-04	k: 1494	n:4380000
Cons ci ratio: 2.613266e-01	ci left: 4.466322e-05	ci right 5.829542e-05	k: 224	n:4380000
KS ci ratio: 2.085745e-03	ci left: 4.459613e-01	ci right 4.468926e-01	k: 1955350	n:4380000
ESYT2   4380000 perm   7790 sec   (562 perm/sec)   p_kst 4.464269e-01   p_cons 5.114155e-05   p_joint 3.410959e-04

Joint ci ratio: 1.012304e-01	ci left: 3.241697e-04	ci right 3.589550e-04	k: 1498	n:4390000
Cons ci ratio: 2.613266e-01	ci left: 4.456148e-05	ci right 5.816263e-05	k: 224	n:4390000
KS ci ratio: 2.083388e-03	ci left: 4.459570e-01	ci right 4.468873e-01	k: 1959793	n:4390000
ESYT2   4390000 perm   7824 sec   (561 perm/sec)   p_kst 4.464221e-01   p_cons 5.102506e-05   p_joint 3.412301e-04

Joint ci ratio: 1.010956e-01	ci left: 3.243191e-04	ci right 3.590713e-04	k: 1502	n:4400000
Cons ci ratio: 2.613266e-01	ci left: 4.446020e-05	ci right 5.803044e-05	k: 224	n:4400000
KS ci ratio: 2.080937e-03	ci left: 4.459770e-01	ci right 4.469062e-01	k: 1964343	n:4400000
ESYT2   4400000 perm   7857 sec   (560 perm/sec)   p_kst 4.464416e-01   p_cons 5.090909e-05   p_joint 3.413636e-04

Joint ci ratio: 1.010284e-01	ci left: 3.240257e-04	ci right 3.587220e-04	k: 1504	n:4410000
Cons ci ratio: 2.607478e-01	ci left: 4.457131e-05	ci right 5.814041e-05	k: 225	n:4410000
KS ci ratio: 2.078545e-03	ci left: 4.459849e-01	ci right 4.469131e-01	k: 1968840	n:4410000
ESYT2   4410000 perm   7891 sec   (559 perm/sec)   p_kst 4.464490e-01   p_cons 5.102041e-05   p_joint 3.410431e-04

Joint ci ratio: 1.008944e-01	ci left: 3.241747e-04	ci right 3.588383e-04	k: 1508	n:4420000
Cons ci ratio: 2.601728e-01	ci left: 4.468194e-05	ci right 5.824986e-05	k: 226	n:4420000
KS ci ratio: 2.076209e-03	ci left: 4.459815e-01	ci right 4.469086e-01	k: 1973287	n:4420000
ESYT2   4420000 perm   7925 sec   (558 perm/sec)   p_kst 4.464450e-01   p_cons 5.113122e-05   p_joint 3.411765e-04

Joint ci ratio: 1.007610e-01	ci left: 3.243231e-04	ci right 3.589539e-04	k: 1512	n:4430000
Cons ci ratio: 2.596016e-01	ci left: 4.479211e-05	ci right 5.835877e-05	k: 227	n:4430000
KS ci ratio: 2.073938e-03	ci left: 4.459645e-01	ci right 4.468906e-01	k: 1977674	n:4430000
ESYT2   4430000 perm   7959 sec   (557 perm/sec)   p_kst 4.464275e-01   p_cons 5.124153e-05   p_joint 3.413093e-04

Joint ci ratio: 1.006612e-01	ci left: 3.242513e-04	ci right 3.588382e-04	k: 1515	n:4440000
Cons ci ratio: 2.590342e-01	ci left: 4.490181e-05	ci right 5.846717e-05	k: 228	n:4440000
KS ci ratio: 2.071603e-03	ci left: 4.459645e-01	ci right 4.468896e-01	k: 1982136	n:4440000
ESYT2   4440000 perm   7992 sec   (556 perm/sec)   p_kst 4.464270e-01   p_cons 5.135135e-05   p_joint 3.412162e-04

Joint ci ratio: 1.010622e-01	ci left: 3.208940e-04	ci right 3.552672e-04	k: 1503	n:4450000
Cons ci ratio: 2.584704e-01	ci left: 4.501106e-05	ci right 5.857504e-05	k: 229	n:4450000
KS ci ratio: 2.069279e-03	ci left: 4.459639e-01	ci right 4.468879e-01	k: 1986595	n:4450000
ESYT2   4450000 perm   8027 sec   (554 perm/sec)   p_kst 4.464258e-01   p_cons 5.146067e-05   p_joint 3.377528e-04

Joint ci ratio: 1.009281e-01	ci left: 3.210488e-04	ci right 3.553901e-04	k: 1507	n:4460000
Cons ci ratio: 2.579104e-01	ci left: 4.511984e-05	ci right 5.868240e-05	k: 230	n:4460000
KS ci ratio: 2.066935e-03	ci left: 4.459699e-01	ci right 4.468929e-01	k: 1991084	n:4460000
ESYT2   4460000 perm   8060 sec   (553 perm/sec)   p_kst 4.464314e-01   p_cons 5.156951e-05   p_joint 3.378924e-04

Joint ci ratio: 9.159102e-02	ci left: 3.908552e-04	ci right 4.285888e-04	k: 1830	n:4470000
Cons ci ratio: 2.573539e-01	ci left: 4.522817e-05	ci right 5.878925e-05	k: 231	n:4470000
KS ci ratio: 2.064541e-03	ci left: 4.459899e-01	ci right 4.469118e-01	k: 1995635	n:4470000
ESYT2   4470000 perm   8095 sec   (552 perm/sec)   p_kst 4.464508e-01   p_cons 5.167785e-05   p_joint 4.093960e-04

Joint ci ratio: 9.144130e-02	ci left: 3.912914e-04	ci right 4.290021e-04	k: 1836	n:4480000
Cons ci ratio: 2.573539e-01	ci left: 4.512721e-05	ci right 5.865802e-05	k: 231	n:4480000
KS ci ratio: 2.062190e-03	ci left: 4.460012e-01	ci right 4.469221e-01	k: 2000148	n:4480000
ESYT2   4480000 perm   8129 sec   (551 perm/sec)   p_kst 4.464616e-01   p_cons 5.156250e-05   p_joint 4.098214e-04

Joint ci ratio: 9.141645e-02	ci left: 3.906376e-04	ci right 4.282744e-04	k: 1837	n:4490000
Cons ci ratio: 2.573539e-01	ci left: 4.502671e-05	ci right 5.852738e-05	k: 231	n:4490000
KS ci ratio: 2.059837e-03	ci left: 4.460149e-01	ci right 4.469348e-01	k: 2004672	n:4490000
ESYT2   4490000 perm   8164 sec   (550 perm/sec)   p_kst 4.464748e-01   p_cons 5.144766e-05   p_joint 4.091314e-04

Joint ci ratio: 9.134195e-02	ci left: 3.904209e-04	ci right 4.280046e-04	k: 1840	n:4500000
Cons ci ratio: 2.573539e-01	ci left: 4.492665e-05	ci right 5.839732e-05	k: 231	n:4500000
KS ci ratio: 2.057488e-03	ci left: 4.460297e-01	ci right 4.469486e-01	k: 2009201	n:4500000
ESYT2   4500000 perm   8199 sec   (549 perm/sec)   p_kst 4.464891e-01   p_cons 5.133333e-05   p_joint 4.088889e-04

Joint ci ratio: 9.121815e-02	ci left: 3.906386e-04	ci right 4.281895e-04	k: 1845	n:4510000
Cons ci ratio: 2.568011e-01	ci left: 4.503448e-05	ci right 5.850382e-05	k: 232	n:4510000
KS ci ratio: 2.055184e-03	ci left: 4.460354e-01	ci right 4.469532e-01	k: 2013689	n:4510000
ESYT2   4510000 perm   8233 sec   (548 perm/sec)   p_kst 4.464942e-01   p_cons 5.144124e-05   p_joint 4.090909e-04

Joint ci ratio: 9.114413e-02	ci left: 3.904229e-04	ci right 4.279210e-04	k: 1848	n:4520000
Cons ci ratio: 2.568011e-01	ci left: 4.493484e-05	ci right 5.837439e-05	k: 232	n:4520000
KS ci ratio: 2.052863e-03	ci left: 4.460472e-01	ci right 4.469640e-01	k: 2018205	n:4520000
ESYT2   4520000 perm   8268 sec   (547 perm/sec)   p_kst 4.465055e-01   p_cons 5.132743e-05   p_joint 4.088496e-04

Joint ci ratio: 9.102114e-02	ci left: 3.906397e-04	ci right 4.281053e-04	k: 1853	n:4530000
Cons ci ratio: 2.562518e-01	ci left: 4.504221e-05	ci right 5.848044e-05	k: 233	n:4530000
KS ci ratio: 2.050638e-03	ci left: 4.460375e-01	ci right 4.469533e-01	k: 2022624	n:4530000
ESYT2   4530000 perm   8303 sec   (546 perm/sec)   p_kst 4.464954e-01   p_cons 5.143488e-05   p_joint 4.090508e-04

Joint ci ratio: 9.094760e-02	ci left: 3.904250e-04	ci right 4.278382e-04	k: 1856	n:4540000
Cons ci ratio: 2.557060e-01	ci left: 4.514913e-05	ci right 5.858599e-05	k: 234	n:4540000
KS ci ratio: 2.048373e-03	ci left: 4.460393e-01	ci right 4.469541e-01	k: 2027095	n:4540000
ESYT2   4540000 perm   8338 sec   (545 perm/sec)   p_kst 4.464967e-01   p_cons 5.154185e-05   p_joint 4.088106e-04

Joint ci ratio: 9.082540e-02	ci left: 3.906408e-04	ci right 4.280217e-04	k: 1861	n:4550000
Cons ci ratio: 2.557060e-01	ci left: 4.504990e-05	ci right 5.845723e-05	k: 234	n:4550000
KS ci ratio: 2.046128e-03	ci left: 4.460381e-01	ci right 4.469519e-01	k: 2031552	n:4550000
ESYT2   4550000 perm   8372 sec   (543 perm/sec)   p_kst 4.464949e-01   p_cons 5.142857e-05   p_joint 4.090110e-04

Joint ci ratio: 9.072800e-02	ci left: 3.906414e-04	ci right 4.279802e-04	k: 1865	n:4560000
Cons ci ratio: 2.551636e-01	ci left: 4.515637e-05	ci right 5.856234e-05	k: 235	n:4560000
KS ci ratio: 2.043895e-03	ci left: 4.460357e-01	ci right 4.469485e-01	k: 2036004	n:4560000
ESYT2   4560000 perm   8407 sec   (542 perm/sec)   p_kst 4.464921e-01   p_cons 5.153509e-05   p_joint 4.089912e-04

Joint ci ratio: 9.072804e-02	ci left: 3.897866e-04	ci right 4.270437e-04	k: 1865	n:4570000
Cons ci ratio: 2.546247e-01	ci left: 4.526240e-05	ci right 5.866696e-05	k: 236	n:4570000
KS ci ratio: 2.041644e-03	ci left: 4.460393e-01	ci right 4.469511e-01	k: 2040483	n:4570000
ESYT2   4570000 perm   8442 sec   (541 perm/sec)   p_kst 4.464952e-01   p_cons 5.164114e-05   p_joint 4.080963e-04

Joint ci ratio: 9.779960e-02	ci left: 3.335029e-04	ci right 3.680073e-04	k: 1605	n:4580000
Cons ci ratio: 2.540892e-01	ci left: 4.536799e-05	ci right 5.877110e-05	k: 237	n:4580000
KS ci ratio: 2.059718e-03	ci left: 4.411493e-01	ci right 4.420591e-01	k: 2022547	n:4580000
ESYT2   4580000 perm   8477 sec   (540 perm/sec)   p_kst 4.416041e-01   p_cons 5.174672e-05   p_joint 3.504367e-04

Joint ci ratio: 9.764770e-02	ci left: 3.338390e-04	ci right 3.683215e-04	k: 1610	n:4590000
Cons ci ratio: 2.530283e-01	ci left: 4.567719e-05	ci right 5.910642e-05	k: 239	n:4590000
KS ci ratio: 2.057456e-03	ci left: 4.411537e-01	ci right 4.420625e-01	k: 2026981	n:4590000
ESYT2   4590000 perm   8512 sec   (539 perm/sec)   p_kst 4.416081e-01   p_cons 5.206972e-05   p_joint 3.507625e-04

Joint ci ratio: 9.749650e-02	ci left: 3.341737e-04	ci right 3.686342e-04	k: 1615	n:4600000
Cons ci ratio: 2.530283e-01	ci left: 4.557790e-05	ci right 5.897793e-05	k: 239	n:4600000
KS ci ratio: 2.055218e-03	ci left: 4.411544e-01	ci right 4.420622e-01	k: 2031398	n:4600000
ESYT2   4600000 perm   8547 sec   (538 perm/sec)   p_kst 4.416083e-01   p_cons 5.195652e-05   p_joint 3.510870e-04

Joint ci ratio: 9.743624e-02	ci left: 3.338721e-04	ci right 3.682790e-04	k: 1617	n:4610000
Cons ci ratio: 2.525028e-01	ci left: 4.568221e-05	ci right 5.908062e-05	k: 240	n:4610000
KS ci ratio: 2.052946e-03	ci left: 4.411648e-01	ci right 4.420717e-01	k: 2035860	n:4610000
ESYT2   4610000 perm   8582 sec   (537 perm/sec)   p_kst 4.416182e-01   p_cons 5.206074e-05   p_joint 3.507592e-04

Joint ci ratio: 9.728603e-02	ci left: 3.342053e-04	ci right 3.685905e-04	k: 1622	n:4620000
Cons ci ratio: 2.519805e-01	ci left: 4.578610e-05	ci right 5.918285e-05	k: 241	n:4620000
KS ci ratio: 2.050692e-03	ci left: 4.411729e-01	ci right 4.420787e-01	k: 2040311	n:4620000
ESYT2   4620000 perm   8617 sec   (536 perm/sec)   p_kst 4.416258e-01   p_cons 5.216450e-05   p_joint 3.510823e-04

Joint ci ratio: 9.722616e-02	ci left: 3.339049e-04	ci right 3.682368e-04	k: 1624	n:4630000
Cons ci ratio: 2.519805e-01	ci left: 4.568721e-05	ci right 5.905502e-05	k: 241	n:4630000
KS ci ratio: 2.048443e-03	ci left: 4.411813e-01	ci right 4.420862e-01	k: 2044764	n:4630000
ESYT2   4630000 perm   8653 sec   (535 perm/sec)   p_kst 4.416337e-01   p_cons 5.205184e-05   p_joint 3.507559e-04

Joint ci ratio: 9.716639e-02	ci left: 3.336059e-04	ci right 3.678847e-04	k: 1626	n:4640000
Cons ci ratio: 2.514615e-01	ci left: 4.579066e-05	ci right 5.915683e-05	k: 242	n:4640000
KS ci ratio: 2.046249e-03	ci left: 4.411783e-01	ci right 4.420822e-01	k: 2049164	n:4640000
ESYT2   4640000 perm   8689 sec   (534 perm/sec)   p_kst 4.416302e-01   p_cons 5.215517e-05   p_joint 3.504310e-04

Joint ci ratio: 9.838376e-02	ci left: 3.244966e-04	ci right 3.582813e-04	k: 1586	n:4650000
Cons ci ratio: 2.509457e-01	ci left: 4.589371e-05	ci right 5.925818e-05	k: 243	n:4650000
KS ci ratio: 2.044093e-03	ci left: 4.411677e-01	ci right 4.420706e-01	k: 2053529	n:4650000
ESYT2   4650000 perm   8724 sec   (533 perm/sec)   p_kst 4.416191e-01   p_cons 5.225806e-05   p_joint 3.410753e-04

Joint ci ratio: 9.819828e-02	ci left: 3.250561e-04	ci right 3.588316e-04	k: 1592	n:4660000
Cons ci ratio: 2.509457e-01	ci left: 4.579522e-05	ci right 5.913101e-05	k: 243	n:4660000
KS ci ratio: 2.041940e-03	ci left: 4.411583e-01	ci right 4.420602e-01	k: 2057899	n:4660000
ESYT2   4660000 perm   8759 sec   (532 perm/sec)   p_kst 4.416092e-01   p_cons 5.214592e-05   p_joint 3.416309e-04

Joint ci ratio: 9.807522e-02	ci left: 3.251956e-04	ci right 3.589408e-04	k: 1596	n:4670000
Cons ci ratio: 2.504330e-01	ci left: 4.589784e-05	ci right 5.923195e-05	k: 244	n:4670000
KS ci ratio: 2.039791e-03	ci left: 4.411496e-01	ci right 4.420505e-01	k: 2062272	n:4670000
ESYT2   4670000 perm   8795 sec   (531 perm/sec)   p_kst 4.416000e-01   p_cons 5.224839e-05   p_joint 3.417559e-04

Joint ci ratio: 9.798324e-02	ci left: 3.251260e-04	ci right 3.588305e-04	k: 1599	n:4680000
Cons ci ratio: 2.494170e-01	ci left: 4.620036e-05	ci right 5.955945e-05	k: 246	n:4680000
KS ci ratio: 2.037632e-03	ci left: 4.411447e-01	ci right 4.420447e-01	k: 2066663	n:4680000
ESYT2   4680000 perm   8831 sec   (530 perm/sec)   p_kst 4.415947e-01   p_cons 5.256410e-05   p_joint 3.416667e-04

Joint ci ratio: 9.786098e-02	ci left: 3.252648e-04	ci right 3.589392e-04	k: 1603	n:4690000
Cons ci ratio: 2.489136e-01	ci left: 4.630175e-05	ci right 5.965896e-05	k: 247	n:4690000
KS ci ratio: 2.035440e-03	ci left: 4.411499e-01	ci right 4.420489e-01	k: 2071101	n:4690000
ESYT2   4690000 perm   8867 sec   (529 perm/sec)   p_kst 4.415994e-01   p_cons 5.266525e-05   p_joint 3.417910e-04

Joint ci ratio: 9.780004e-02	ci left: 3.249878e-04	ci right 3.586114e-04	k: 1605	n:4700000
Cons ci ratio: 2.484133e-01	ci left: 4.640275e-05	ci right 5.975803e-05	k: 248	n:4700000
KS ci ratio: 2.033243e-03	ci left: 4.411576e-01	ci right 4.420557e-01	k: 2075551	n:4700000
ESYT2   4700000 perm   8903 sec   (528 perm/sec)   p_kst 4.416066e-01   p_cons 5.276596e-05   p_joint 3.414894e-04

Joint ci ratio: 9.773922e-02	ci left: 3.247121e-04	ci right 3.582851e-04	k: 1607	n:4710000
Cons ci ratio: 2.484133e-01	ci left: 4.630423e-05	ci right 5.963115e-05	k: 248	n:4710000
KS ci ratio: 2.031057e-03	ci left: 4.411646e-01	ci right 4.420618e-01	k: 2079998	n:4710000
ESYT2   4710000 perm   8939 sec   (527 perm/sec)   p_kst 4.416132e-01   p_cons 5.265393e-05   p_joint 3.411890e-04

Joint ci ratio: 9.758760e-02	ci left: 3.250576e-04	ci right 3.586112e-04	k: 1612	n:4720000
Cons ci ratio: 2.484133e-01	ci left: 4.620613e-05	ci right 5.950481e-05	k: 248	n:4720000
KS ci ratio: 2.028930e-03	ci left: 4.411587e-01	ci right 4.420549e-01	k: 2084384	n:4720000
ESYT2   4720000 perm   8976 sec   (526 perm/sec)   p_kst 4.416068e-01   p_cons 5.254237e-05   p_joint 3.415254e-04

Joint ci ratio: 9.755738e-02	ci left: 3.245766e-04	ci right 3.580696e-04	k: 1613	n:4730000
Cons ci ratio: 2.484133e-01	ci left: 4.610844e-05	ci right 5.937901e-05	k: 248	n:4730000
KS ci ratio: 2.026777e-03	ci left: 4.411611e-01	ci right 4.420563e-01	k: 2088809	n:4730000
ESYT2   4730000 perm   9011 sec   (525 perm/sec)   p_kst 4.416087e-01   p_cons 5.243129e-05   p_joint 3.410148e-04

Joint ci ratio: 9.749701e-02	ci left: 3.243035e-04	ci right 3.577464e-04	k: 1615	n:4740000
Cons ci ratio: 2.479160e-01	ci left: 4.620901e-05	ci right 5.947780e-05	k: 249	n:4740000
KS ci ratio: 2.024645e-03	ci left: 4.411596e-01	ci right 4.420539e-01	k: 2093216	n:4740000
ESYT2   4740000 perm   9047 sec   (524 perm/sec)   p_kst 4.416068e-01   p_cons 5.253165e-05   p_joint 3.407173e-04

Joint ci ratio: 9.737656e-02	ci left: 3.244424e-04	ci right 3.578559e-04	k: 1619	n:4750000
Cons ci ratio: 2.479160e-01	ci left: 4.611173e-05	ci right 5.935259e-05	k: 249	n:4750000
KS ci ratio: 2.022482e-03	ci left: 4.411677e-01	ci right 4.420610e-01	k: 2097668	n:4750000
ESYT2   4750000 perm   9083 sec   (523 perm/sec)   p_kst 4.416143e-01   p_cons 5.242105e-05   p_joint 3.408421e-04

Joint ci ratio: 9.746692e-02	ci left: 3.231458e-04	ci right 3.564585e-04	k: 1616	n:4760000
Cons ci ratio: 2.479160e-01	ci left: 4.601486e-05	ci right 5.922790e-05	k: 249	n:4760000
KS ci ratio: 2.020365e-03	ci left: 4.411660e-01	ci right 4.420584e-01	k: 2102074	n:4760000
ESYT2   4760000 perm   9119 sec   (522 perm/sec)   p_kst 4.416122e-01   p_cons 5.231092e-05   p_joint 3.394958e-04

Joint ci ratio: 9.731656e-02	ci left: 3.234911e-04	ci right 3.567849e-04	k: 1621	n:4770000
Cons ci ratio: 2.479160e-01	ci left: 4.591839e-05	ci right 5.910373e-05	k: 249	n:4770000
KS ci ratio: 2.018222e-03	ci left: 4.411725e-01	ci right 4.420640e-01	k: 2106519	n:4770000
ESYT2   4770000 perm   9156 sec   (521 perm/sec)   p_kst 4.416182e-01   p_cons 5.220126e-05   p_joint 3.398323e-04

Joint ci ratio: 9.813710e-02	ci left: 3.173038e-04	ci right 3.502520e-04	k: 1594	n:4780000
Cons ci ratio: 2.479161e-01	ci left: 4.582233e-05	ci right 5.898008e-05	k: 249	n:4780000
KS ci ratio: 2.016071e-03	ci left: 4.411824e-01	ci right 4.420729e-01	k: 2110980	n:4780000
ESYT2   4780000 perm   9192 sec   (520 perm/sec)   p_kst 4.416276e-01   p_cons 5.209205e-05   p_joint 3.334728e-04

Joint ci ratio: 9.813713e-02	ci left: 3.166414e-04	ci right 3.495208e-04	k: 1594	n:4790000
Cons ci ratio: 2.479161e-01	ci left: 4.572666e-05	ci right 5.885695e-05	k: 249	n:4790000
KS ci ratio: 2.013967e-03	ci left: 4.411824e-01	ci right 4.420720e-01	k: 2115394	n:4790000
ESYT2   4790000 perm   9229 sec   (519 perm/sec)   p_kst 4.416271e-01   p_cons 5.198330e-05   p_joint 3.327766e-04

Joint ci ratio: 9.804497e-02	ci left: 3.165913e-04	ci right 3.494330e-04	k: 1597	n:4800000
Cons ci ratio: 2.474217e-01	ci left: 4.582680e-05	ci right 5.895557e-05	k: 250	n:4800000
KS ci ratio: 2.011868e-03	ci left: 4.411830e-01	ci right 4.420717e-01	k: 2119811	n:4800000
ESYT2   4800000 perm   9265 sec   (518 perm/sec)   p_kst 4.416273e-01   p_cons 5.208333e-05   p_joint 3.327083e-04

Joint ci ratio: 9.792249e-02	ci left: 3.167444e-04	ci right 3.495585e-04	k: 1601	n:4810000
Cons ci ratio: 2.474217e-01	ci left: 4.573153e-05	ci right 5.883300e-05	k: 250	n:4810000
KS ci ratio: 2.009861e-03	ci left: 4.411624e-01	ci right 4.420502e-01	k: 2124126	n:4810000
ESYT2   4810000 perm   9302 sec   (517 perm/sec)   p_kst 4.416062e-01   p_cons 5.197505e-05   p_joint 3.328482e-04

Joint ci ratio: 9.792252e-02	ci left: 3.160872e-04	ci right 3.488333e-04	k: 1601	n:4820000
Cons ci ratio: 2.474217e-01	ci left: 4.563665e-05	ci right 5.871094e-05	k: 250	n:4820000
KS ci ratio: 2.007787e-03	ci left: 4.411599e-01	ci right 4.420468e-01	k: 2128528	n:4820000
ESYT2   4820000 perm   9338 sec   (516 perm/sec)   p_kst 4.416033e-01   p_cons 5.186722e-05   p_joint 3.321577e-04

Joint ci ratio: 9.789200e-02	ci left: 3.156348e-04	ci right 3.483232e-04	k: 1602	n:4830000
Cons ci ratio: 2.474218e-01	ci left: 4.554216e-05	ci right 5.858939e-05	k: 250	n:4830000
KS ci ratio: 2.005679e-03	ci left: 4.411674e-01	ci right 4.420533e-01	k: 2132978	n:4830000
ESYT2   4830000 perm   9376 sec   (515 perm/sec)   p_kst 4.416104e-01   p_cons 5.175983e-05   p_joint 3.316770e-04

Joint ci ratio: 9.780053e-02	ci left: 3.155873e-04	ci right 3.482385e-04	k: 1605	n:4840000
Cons ci ratio: 2.474218e-01	ci left: 4.544807e-05	ci right 5.846833e-05	k: 250	n:4840000
KS ci ratio: 2.003608e-03	ci left: 4.411675e-01	ci right 4.420525e-01	k: 2137392	n:4840000
ESYT2   4840000 perm   9413 sec   (514 perm/sec)   p_kst 4.416099e-01   p_cons 5.165289e-05   p_joint 3.316116e-04

Joint ci ratio: 9.767895e-02	ci left: 3.157412e-04	ci right 3.483654e-04	k: 1609	n:4850000
Cons ci ratio: 2.474218e-01	ci left: 4.535436e-05	ci right 5.834778e-05	k: 250	n:4850000
KS ci ratio: 2.001564e-03	ci left: 4.411621e-01	ci right 4.420462e-01	k: 2141780	n:4850000
ESYT2   4850000 perm   9450 sec   (513 perm/sec)   p_kst 4.416041e-01   p_cons 5.154639e-05   p_joint 3.317526e-04

Joint ci ratio: 9.758808e-02	ci left: 3.156937e-04	ci right 3.482809e-04	k: 1612	n:4860000
Cons ci ratio: 2.474218e-01	ci left: 4.526104e-05	ci right 5.822773e-05	k: 250	n:4860000
KS ci ratio: 1.999493e-03	ci left: 4.411652e-01	ci right 4.420484e-01	k: 2146209	n:4860000
ESYT2   4860000 perm   9487 sec   (512 perm/sec)   p_kst 4.416068e-01   p_cons 5.144033e-05   p_joint 3.316872e-04

Joint ci ratio: 9.777018e-02	ci left: 3.138435e-04	ci right 3.463036e-04	k: 1606	n:4870000
Cons ci ratio: 2.474218e-01	ci left: 4.516810e-05	ci right 5.810816e-05	k: 250	n:4870000
KS ci ratio: 1.997435e-03	ci left: 4.411667e-01	ci right 4.420490e-01	k: 2150630	n:4870000
ESYT2   4870000 perm   9524 sec   (511 perm/sec)   p_kst 4.416078e-01   p_cons 5.133470e-05   p_joint 3.297741e-04

Joint ci ratio: 9.758814e-02	ci left: 3.143999e-04	ci right 3.468535e-04	k: 1612	n:4880000
Cons ci ratio: 2.464419e-01	ci left: 4.546002e-05	ci right 5.842423e-05	k: 252	n:4880000
KS ci ratio: 1.995391e-03	ci left: 4.411663e-01	ci right 4.420477e-01	k: 2155042	n:4880000
ESYT2   4880000 perm   9561 sec   (510 perm/sec)   p_kst 4.416070e-01   p_cons 5.163934e-05   p_joint 3.303279e-04

Joint ci ratio: 9.752771e-02	ci left: 3.141560e-04	ci right 3.465632e-04	k: 1614	n:4890000
Cons ci ratio: 2.464419e-01	ci left: 4.536706e-05	ci right 5.830475e-05	k: 252	n:4890000
KS ci ratio: 1.993380e-03	ci left: 4.411592e-01	ci right 4.420397e-01	k: 2159421	n:4890000
ESYT2   4890000 perm   9598 sec   (509 perm/sec)   p_kst 4.415994e-01   p_cons 5.153374e-05   p_joint 3.300613e-04

Joint ci ratio: 9.731700e-02	ci left: 3.149086e-04	ci right 3.473193e-04	k: 1621	n:4900000
Cons ci ratio: 2.454735e-01	ci left: 4.565748e-05	ci right 5.861903e-05	k: 254	n:4900000
KS ci ratio: 1.991394e-03	ci left: 4.411476e-01	ci right 4.420272e-01	k: 2163778	n:4900000
ESYT2   4900000 perm   9636 sec   (509 perm/sec)   p_kst 4.415873e-01   p_cons 5.183673e-05   p_joint 3.308163e-04

Joint ci ratio: 9.719722e-02	ci left: 3.150621e-04	ci right 3.474464e-04	k: 1625	n:4910000
Cons ci ratio: 2.454735e-01	ci left: 4.556449e-05	ci right 5.849965e-05	k: 254	n:4910000
KS ci ratio: 1.989294e-03	ci left: 4.411656e-01	ci right 4.420443e-01	k: 2168280	n:4910000
ESYT2   4910000 perm   9674 sec   (508 perm/sec)   p_kst 4.416049e-01   p_cons 5.173116e-05   p_joint 3.309572e-04

Joint ci ratio: 9.713751e-02	ci left: 3.148183e-04	ci right 3.471566e-04	k: 1627	n:4920000
Cons ci ratio: 2.449936e-01	ci left: 4.566264e-05	ci right 5.859646e-05	k: 255	n:4920000
KS ci ratio: 1.987248e-03	ci left: 4.411719e-01	ci right 4.420497e-01	k: 2172725	n:4920000
ESYT2   4920000 perm   9711 sec   (507 perm/sec)   p_kst 4.416108e-01   p_cons 5.182927e-05   p_joint 3.306911e-04

Joint ci ratio: 9.743735e-02	ci left: 3.122007e-04	ci right 3.443747e-04	k: 1617	n:4930000
Cons ci ratio: 2.445165e-01	ci left: 4.576042e-05	ci right 5.869286e-05	k: 256	n:4930000
KS ci ratio: 1.985236e-03	ci left: 4.411711e-01	ci right 4.420480e-01	k: 2177135	n:4930000
ESYT2   4930000 perm   9749 sec   (506 perm/sec)   p_kst 4.416095e-01   p_cons 5.192698e-05   p_joint 3.279919e-04

Joint ci ratio: 9.755809e-02	ci left: 3.107787e-04	ci right 3.428481e-04	k: 1613	n:4940000
Cons ci ratio: 2.445165e-01	ci left: 4.566779e-05	ci right 5.857405e-05	k: 256	n:4940000
KS ci ratio: 1.983168e-03	ci left: 4.411859e-01	ci right 4.420619e-01	k: 2181622	n:4940000
ESYT2   4940000 perm   9786 sec   (505 perm/sec)   p_kst 4.416239e-01   p_cons 5.182186e-05   p_joint 3.265182e-04

Joint ci ratio: 9.749772e-02	ci left: 3.105451e-04	ci right 3.425694e-04	k: 1615	n:4950000
Cons ci ratio: 2.445165e-01	ci left: 4.557553e-05	ci right 5.845572e-05	k: 256	n:4950000
KS ci ratio: 1.981183e-03	ci left: 4.411817e-01	ci right 4.420568e-01	k: 2186015	n:4950000
ESYT2   4950000 perm   9823 sec   (504 perm/sec)   p_kst 4.416192e-01   p_cons 5.171717e-05   p_joint 3.262626e-04

Joint ci ratio: 9.746759e-02	ci left: 3.101157e-04	ci right 3.420853e-04	k: 1616	n:4960000
Cons ci ratio: 2.440422e-01	ci left: 4.567292e-05	ci right 5.855179e-05	k: 257	n:4960000
KS ci ratio: 1.979171e-03	ci left: 4.411855e-01	ci right 4.420597e-01	k: 2190448	n:4960000
ESYT2   4960000 perm   9861 sec   (503 perm/sec)   p_kst 4.416226e-01   p_cons 5.181452e-05   p_joint 3.258065e-04

Joint ci ratio: 9.731723e-02	ci left: 3.104732e-04	ci right 3.424275e-04	k: 1621	n:4970000
Cons ci ratio: 2.435706e-01	ci left: 4.576994e-05	ci right 5.864746e-05	k: 258	n:4970000
KS ci ratio: 1.977146e-03	ci left: 4.411941e-01	ci right 4.420675e-01	k: 2194905	n:4970000
ESYT2   4970000 perm   9898 sec   (502 perm/sec)   p_kst 4.416308e-01   p_cons 5.191147e-05   p_joint 3.261569e-04

Joint ci ratio: 9.722736e-02	ci left: 3.104375e-04	ci right 3.423570e-04	k: 1624	n:4980000
Cons ci ratio: 2.431017e-01	ci left: 4.586659e-05	ci right 5.874271e-05	k: 259	n:4980000
KS ci ratio: 1.975121e-03	ci left: 4.412044e-01	ci right 4.420768e-01	k: 2199370	n:4980000
ESYT2   4980000 perm   9937 sec   (501 perm/sec)   p_kst 4.416406e-01   p_cons 5.200803e-05   p_joint 3.261044e-04

Joint ci ratio: 9.710790e-02	ci left: 3.105976e-04	ci right 3.424919e-04	k: 1628	n:4990000
Cons ci ratio: 2.431017e-01	ci left: 4.577467e-05	ci right 5.862499e-05	k: 259	n:4990000
KS ci ratio: 1.973067e-03	ci left: 4.412233e-01	ci right 4.420950e-01	k: 2203879	n:4990000
ESYT2   4990000 perm   9974 sec   (500 perm/sec)   p_kst 4.416591e-01   p_cons 5.190381e-05   p_joint 3.262525e-04

Joint ci ratio: 9.698889e-02	ci left: 3.107569e-04	ci right 3.426264e-04	k: 1632	n:5000000
Cons ci ratio: 2.426356e-01	ci left: 4.587095e-05	ci right 5.871989e-05	k: 260	n:5000000
KS ci ratio: 1.971048e-03	ci left: 4.412351e-01	ci right 4.421058e-01	k: 2208352	n:5000000
ESYT2   5000000 perm   10012 sec   (499 perm/sec)   p_kst 4.416704e-01   p_cons 5.200000e-05   p_joint 3.264000e-04

Outputting figure to mutsig2_images.part000000000058/ESYT2.7_2770_5000000_0.44167_5.2e-05_0.0003264.png
                gene_name: ESYT2
               theta_stop: 0.24 
                    nperm: 5000000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 5.20e-05 
      ci_cons_bounds_left: 4.59e-05 
     ci_cons_bounds_right: 5.87e-05 
                  p_joint: 0.00033 
     ci_joint_bounds_left: 0.00031 
    ci_joint_bounds_right: 0.00034 

Current progress: 16 percent done.
ETS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.149076e-02	ci left: 7.605104e-01	ci right 7.771327e-01	k: 7689	n:10000
KS ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
ETS1   10000 perm   2 sec   (6301 perm/sec)   p_kst 6.612000e-01   p_cons 7.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETS1.7_1580_10000_0.6612_0.7689_1.png
                gene_name: ETS1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ERN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
Cons ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
KS ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
ERN2   10000 perm   2 sec   (5723 perm/sec)   p_kst 4.990000e-02   p_cons 3.590000e-02   p_joint 1.510000e-02

Joint ci ratio: 1.937784e-01	ci left: 1.810475e-02	ci right 2.203652e-02	k: 400	n:20000
Cons ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
KS ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
ERN2   20000 perm   4 sec   (5212 perm/sec)   p_kst 4.945000e-02   p_cons 2.960000e-02   p_joint 2.000000e-02

Joint ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
Cons ci ratio: 1.202071e-01	ci left: 3.217197e-02	ci right 3.631887e-02	k: 1026	n:30000
KS ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
ERN2   30000 perm   6 sec   (5004 perm/sec)   p_kst 4.933333e-02   p_cons 3.420000e-02   p_joint 1.446667e-02

Joint ci ratio: 1.799423e-01	ci left: 1.066927e-02	ci right 1.280250e-02	k: 468	n:40000
Cons ci ratio: 1.044721e-01	ci left: 3.222101e-02	ci right 3.579705e-02	k: 1359	n:40000
KS ci ratio: 8.518715e-02	ci left: 4.812934e-02	ci right 5.243625e-02	k: 2010	n:40000
ERN2   40000 perm   8 sec   (4849 perm/sec)   p_kst 5.025000e-02   p_cons 3.397500e-02   p_joint 1.170000e-02

Joint ci ratio: 1.397137e-01	ci left: 1.441612e-02	ci right 1.660066e-02	k: 774	n:50000
Cons ci ratio: 9.433693e-02	ci left: 3.180313e-02	ci right 3.497135e-02	k: 1668	n:50000
KS ci ratio: 7.651088e-02	ci left: 4.796838e-02	ci right 5.180410e-02	k: 2493	n:50000
ERN2   50000 perm   11 sec   (4720 perm/sec)   p_kst 4.986000e-02   p_cons 3.336000e-02   p_joint 1.548000e-02

Joint ci ratio: 1.118798e-01	ci left: 1.892713e-02	ci right 2.118629e-02	k: 1202	n:60000
Cons ci ratio: 8.595786e-02	ci left: 3.205817e-02	ci right 3.495385e-02	k: 2009	n:60000
KS ci ratio: 6.978088e-02	ci left: 4.822040e-02	ci right 5.172329e-02	k: 2997	n:60000
ERN2   60000 perm   13 sec   (4633 perm/sec)   p_kst 4.995000e-02   p_cons 3.348333e-02   p_joint 2.003333e-02

Joint ci ratio: 9.277152e-02	ci left: 2.371638e-02	ci right 2.603752e-02	k: 1740	n:70000
Cons ci ratio: 7.944151e-02	ci left: 3.227732e-02	ci right 3.496152e-02	k: 2352	n:70000
KS ci ratio: 6.435965e-02	ci left: 4.870648e-02	ci right 5.195949e-02	k: 3522	n:70000
ERN2   70000 perm   15 sec   (4533 perm/sec)   p_kst 5.031429e-02   p_cons 3.360000e-02   p_joint 2.485714e-02

Outputting figure to mutsig2_images.part000000000058/ERN2.6_3013_70000_0.050314_0.0336_0.024857.png
                gene_name: ERN2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 20 percent done.
EVPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
Cons ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
KS ci ratio: 2.287912e-02	ci left: 7.372464e-01	ci right 7.544102e-01	k: 7459	n:10000
EVPL   10000 perm   2 sec   (5003 perm/sec)   p_kst 7.459000e-01   p_cons 5.838000e-01   p_joint 7.985000e-01

Outputting figure to mutsig2_images.part000000000058/EVPL.6_6190_10000_0.7459_0.5838_0.7985.png
                gene_name: EVPL
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 22 percent done.
ERC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
KS ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
ERC1   10000 perm   2 sec   (5893 perm/sec)   p_kst 9.764000e-01   p_cons 7.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERC1.5_3423_10000_0.9764_0.7726_1.png
                gene_name: ERC1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
ERCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
Cons ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
KS ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
ERCC3   10000 perm   2 sec   (6207 perm/sec)   p_kst 2.238000e-01   p_cons 1.624000e-01   p_joint 2.960000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC3.5_2409_10000_0.2238_0.1624_0.296.png
                gene_name: ERCC3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
ERCC6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
Cons ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
ERCC6L   10000 perm   2 sec   (5522 perm/sec)   p_kst 2.629000e-01   p_cons 5.955000e-01   p_joint 4.648000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6L.5_3761_10000_0.2629_0.5955_0.4648.png
                gene_name: ERCC6L
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 27 percent done.
ETFDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
Cons ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
KS ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
ETFDH   10000 perm   1 sec   (6707 perm/sec)   p_kst 6.427000e-01   p_cons 3.030000e-01   p_joint 6.114000e-01

Outputting figure to mutsig2_images.part000000000058/ETFDH.5_1906_10000_0.6427_0.303_0.6114.png
                gene_name: ETFDH
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
EVC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
EVC   10000 perm   2 sec   (5687 perm/sec)   p_kst 1.847000e-01   p_cons 9.027000e-01   p_joint 3.325000e-01

Outputting figure to mutsig2_images.part000000000058/EVC.5_3063_10000_0.1847_0.9027_0.3325.png
                gene_name: EVC
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
EVI5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.580070e-02	ci left: 2.029395e-01	ci right 2.190293e-01	k: 2109	n:10000
Cons ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
KS ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
EVI5   10000 perm   2 sec   (6007 perm/sec)   p_kst 5.964000e-01   p_cons 2.890000e-02   p_joint 2.109000e-01

Joint ci ratio: 5.921117e-02	ci left: 1.744008e-01	ci right 1.850924e-01	k: 3594	n:20000
Cons ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
KS ci ratio: 2.278207e-02	ci left: 5.899629e-01	ci right 6.036089e-01	k: 11936	n:20000
EVI5   20000 perm   4 sec   (5406 perm/sec)   p_kst 5.968000e-01   p_cons 2.975000e-02   p_joint 1.797000e-01

Joint ci ratio: 4.311323e-02	ci left: 2.113544e-01	ci right 2.207007e-01	k: 6480	n:30000
Cons ci ratio: 1.263217e-01	ci left: 2.913224e-02	ci right 3.309259e-02	k: 932	n:30000
KS ci ratio: 1.849508e-02	ci left: 5.939960e-01	ci right 6.051181e-01	k: 17987	n:30000
EVI5   30000 perm   6 sec   (5156 perm/sec)   p_kst 5.995667e-01   p_cons 3.106667e-02   p_joint 2.160000e-01

Joint ci ratio: 4.342339e-02	ci left: 1.655622e-01	ci right 1.729359e-01	k: 6769	n:40000
Cons ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
KS ci ratio: 1.606966e-02	ci left: 5.931757e-01	ci right 6.028101e-01	k: 23920	n:40000
EVI5   40000 perm   8 sec   (4996 perm/sec)   p_kst 5.980000e-01   p_cons 3.120000e-02   p_joint 1.692250e-01

Joint ci ratio: 3.910501e-02	ci left: 1.640577e-01	ci right 1.706210e-01	k: 8366	n:50000
Cons ci ratio: 9.759018e-02	ci left: 2.973241e-02	ci right 3.280232e-02	k: 1562	n:50000
KS ci ratio: 1.439595e-02	ci left: 5.929255e-01	ci right 6.015432e-01	k: 29862	n:50000
EVI5   50000 perm   10 sec   (4866 perm/sec)   p_kst 5.972400e-01   p_cons 3.124000e-02   p_joint 1.673200e-01

Outputting figure to mutsig2_images.part000000000058/EVI5.5_2505_50000_0.59724_0.03124_0.16732.png
                gene_name: EVI5
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 33 percent done.
EREG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
Cons ci ratio: 2.437178e-02	ci left: 7.122978e-01	ci right 7.299732e-01	k: 7212	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
EREG   10000 perm   1 sec   (7682 perm/sec)   p_kst 6.230000e-01   p_cons 7.212000e-01   p_joint 7.913000e-01

Outputting figure to mutsig2_images.part000000000058/EREG.4_530_10000_0.623_0.7212_0.7913.png
                gene_name: EREG
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 35 percent done.
ESF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
Cons ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
KS ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
ESF1   10000 perm   2 sec   (6508 perm/sec)   p_kst 2.096000e-01   p_cons 1.536000e-01   p_joint 2.026000e-01

Outputting figure to mutsig2_images.part000000000058/ESF1.4_2608_10000_0.2096_0.1536_0.2026.png
                gene_name: ESF1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 36 percent done.
ESPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
Cons ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
KS ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
ESPL1   10000 perm   2 sec   (5004 perm/sec)   p_kst 4.604000e-01   p_cons 6.073000e-01   p_joint 6.454000e-01

Outputting figure to mutsig2_images.part000000000058/ESPL1.4_6483_10000_0.4604_0.6073_0.6454.png
                gene_name: ESPL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 38 percent done.
ESRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
Cons ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
ESRP1   10000 perm   2 sec   (6366 perm/sec)   p_kst 6.040000e-02   p_cons 5.400000e-03   p_joint 2.300000e-02

Joint ci ratio: 1.596804e-01	ci left: 2.691024e-02	ci right 3.162794e-02	k: 584	n:20000
Cons ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
KS ci ratio: 1.116030e-01	ci left: 5.484866e-02	ci right 6.138055e-02	k: 1161	n:20000
ESRP1   20000 perm   4 sec   (5668 perm/sec)   p_kst 5.805000e-02   p_cons 4.900000e-03   p_joint 2.920000e-02

Joint ci ratio: 1.490585e-01	ci left: 2.085152e-02	ci right 2.424182e-02	k: 675	n:30000
Cons ci ratio: 3.120252e-01	ci left: 4.417678e-03	ci right 6.080355e-03	k: 156	n:30000
KS ci ratio: 8.942081e-02	ci left: 5.750183e-02	ci right 6.291706e-02	k: 1805	n:30000
ESRP1   30000 perm   6 sec   (5395 perm/sec)   p_kst 6.016667e-02   p_cons 5.200000e-03   p_joint 2.250000e-02

Joint ci ratio: 1.530985e-01	ci left: 1.488932e-02	ci right 1.738165e-02	k: 644	n:40000
Cons ci ratio: 2.611784e-01	ci left: 4.868911e-03	ci right 6.354248e-03	k: 223	n:40000
KS ci ratio: 7.686520e-02	ci left: 5.869859e-02	ci right 6.341539e-02	k: 2441	n:40000
ESRP1   40000 perm   8 sec   (5206 perm/sec)   p_kst 6.102500e-02   p_cons 5.575000e-03   p_joint 1.610000e-02

Joint ci ratio: 1.348472e-01	ci left: 1.549822e-02	ci right 1.775840e-02	k: 830	n:50000
Cons ci ratio: 2.374745e-01	ci left: 4.776484e-03	ci right 6.081948e-03	k: 270	n:50000
KS ci ratio: 6.930222e-02	ci left: 5.805201e-02	ci right 6.223924e-02	k: 3006	n:50000
ESRP1   50000 perm   10 sec   (5071 perm/sec)   p_kst 6.012000e-02   p_cons 5.400000e-03   p_joint 1.660000e-02

Joint ci ratio: 1.044954e-01	ci left: 2.171788e-02	ci right 2.412857e-02	k: 1374	n:60000
Cons ci ratio: 2.185477e-01	ci left: 4.750485e-03	ci right 5.931473e-03	k: 319	n:60000
KS ci ratio: 6.338940e-02	ci left: 5.801421e-02	ci right 6.182849e-02	k: 3594	n:60000
ESRP1   60000 perm   12 sec   (4955 perm/sec)   p_kst 5.990000e-02   p_cons 5.316667e-03   p_joint 2.290000e-02

Joint ci ratio: 1.105565e-01	ci left: 1.666659e-02	ci right 1.863082e-02	k: 1234	n:70000
Cons ci ratio: 1.981975e-01	ci left: 5.006296e-03	ci right 6.121005e-03	k: 388	n:70000
KS ci ratio: 5.857713e-02	ci left: 5.836454e-02	ci right 6.190060e-02	k: 4208	n:70000
ESRP1   70000 perm   14 sec   (4845 perm/sec)   p_kst 6.011429e-02   p_cons 5.542857e-03   p_joint 1.762857e-02

Joint ci ratio: 1.082576e-01	ci left: 1.525135e-02	ci right 1.700900e-02	k: 1289	n:80000
Cons ci ratio: 1.848898e-01	ci left: 5.070792e-03	ci right 6.115554e-03	k: 446	n:80000
KS ci ratio: 5.462670e-02	ci left: 5.882062e-02	ci right 6.213635e-02	k: 4837	n:80000
ESRP1   80000 perm   17 sec   (4747 perm/sec)   p_kst 6.046250e-02   p_cons 5.575000e-03   p_joint 1.611250e-02

Joint ci ratio: 1.097013e-01	ci left: 1.322093e-02	ci right 1.476619e-02	k: 1258	n:90000
Cons ci ratio: 1.775168e-01	ci left: 4.910409e-03	ci right 5.877447e-03	k: 484	n:90000
KS ci ratio: 5.160230e-02	ci left: 5.869857e-02	ci right 6.181873e-02	k: 5422	n:90000
ESRP1   90000 perm   19 sec   (4674 perm/sec)   p_kst 6.024444e-02   p_cons 5.377778e-03   p_joint 1.397778e-02

Joint ci ratio: 8.950525e-02	ci left: 1.797696e-02	ci right 1.967111e-02	k: 1881	n:100000
Cons ci ratio: 1.530170e-01	ci left: 6.020908e-03	ci right 7.028036e-03	k: 651	n:100000
KS ci ratio: 4.899128e-02	ci left: 5.869401e-02	ci right 6.165157e-02	k: 6016	n:100000
ESRP1   100000 perm   22 sec   (4597 perm/sec)   p_kst 6.016000e-02   p_cons 6.510000e-03   p_joint 1.881000e-02

Joint ci ratio: 7.123562e-02	ci left: 2.583570e-02	ci right 2.775299e-02	k: 2946	n:110000
Cons ci ratio: 1.452048e-01	ci left: 6.103707e-03	ci right 7.068039e-03	k: 723	n:110000
KS ci ratio: 4.684973e-02	ci left: 5.843281e-02	ci right 6.124500e-02	k: 6581	n:110000
ESRP1   110000 perm   24 sec   (4528 perm/sec)   p_kst 5.982727e-02   p_cons 6.572727e-03   p_joint 2.678182e-02

Joint ci ratio: 7.175534e-02	ci left: 2.339520e-02	ci right 2.514456e-02	k: 2911	n:120000
Cons ci ratio: 1.382166e-01	ci left: 6.197934e-03	ci right 7.126148e-03	k: 798	n:120000
KS ci ratio: 4.469115e-02	ci left: 5.890192e-02	ci right 6.160271e-02	k: 7229	n:120000
ESRP1   120000 perm   27 sec   (4458 perm/sec)   p_kst 6.024167e-02   p_cons 6.650000e-03   p_joint 2.425833e-02

Joint ci ratio: 6.936592e-02	ci left: 2.314457e-02	ci right 2.481522e-02	k: 3116	n:130000
Cons ci ratio: 1.320730e-01	ci left: 6.286044e-03	ci right 7.182325e-03	k: 874	n:130000
KS ci ratio: 4.285207e-02	ci left: 5.917951e-02	ci right 6.177859e-02	k: 7861	n:130000
ESRP1   130000 perm   30 sec   (4392 perm/sec)   p_kst 6.046923e-02   p_cons 6.723077e-03   p_joint 2.396923e-02

Joint ci ratio: 6.290051e-02	ci left: 2.614314e-02	ci right 2.784796e-02	k: 3778	n:140000
Cons ci ratio: 1.276311e-01	ci left: 6.265510e-03	ci right 7.126541e-03	k: 936	n:140000
KS ci ratio: 4.136816e-02	ci left: 5.902326e-02	ci right 6.152356e-02	k: 8437	n:140000
ESRP1   140000 perm   32 sec   (4326 perm/sec)   p_kst 6.026429e-02   p_cons 6.685714e-03   p_joint 2.698571e-02

Joint ci ratio: 6.076713e-02	ci left: 2.617244e-02	ci right 2.781924e-02	k: 4048	n:150000
Cons ci ratio: 1.226245e-01	ci left: 6.351553e-03	ci right 7.187683e-03	k: 1014	n:150000
KS ci ratio: 4.000245e-02	ci left: 5.896185e-02	ci right 6.137519e-02	k: 9024	n:150000
ESRP1   150000 perm   35 sec   (4260 perm/sec)   p_kst 6.016000e-02   p_cons 6.760000e-03   p_joint 2.698667e-02

Joint ci ratio: 5.917588e-02	ci left: 2.590325e-02	ci right 2.748896e-02	k: 4270	n:160000
Cons ci ratio: 1.186021e-01	ci left: 6.378888e-03	ci right 7.189140e-03	k: 1084	n:160000
KS ci ratio: 3.883462e-02	ci left: 5.870494e-02	ci right 6.103604e-02	k: 9578	n:160000
ESRP1   160000 perm   38 sec   (4195 perm/sec)   p_kst 5.986250e-02   p_cons 6.775000e-03   p_joint 2.668750e-02

Joint ci ratio: 5.641383e-02	ci left: 2.683797e-02	ci right 2.840172e-02	k: 4694	n:170000
Cons ci ratio: 1.151018e-01	ci left: 6.386259e-03	ci right 7.171879e-03	k: 1151	n:170000
KS ci ratio: 3.765483e-02	ci left: 5.879985e-02	ci right 6.106224e-02	k: 10187	n:170000
ESRP1   170000 perm   41 sec   (4132 perm/sec)   p_kst 5.992353e-02   p_cons 6.770588e-03   p_joint 2.761176e-02

Joint ci ratio: 5.574912e-02	ci left: 2.598754e-02	ci right 2.748331e-02	k: 4811	n:180000
Cons ci ratio: 1.123124e-01	ci left: 6.344517e-03	ci right 7.104834e-03	k: 1209	n:180000
KS ci ratio: 3.662155e-02	ci left: 5.874747e-02	ci right 6.094451e-02	k: 10771	n:180000
ESRP1   180000 perm   44 sec   (4073 perm/sec)   p_kst 5.983889e-02   p_cons 6.716667e-03   p_joint 2.672778e-02

Joint ci ratio: 5.359555e-02	ci left: 2.664978e-02	ci right 2.812258e-02	k: 5202	n:190000
Cons ci ratio: 1.097599e-01	ci left: 6.302256e-03	ci right 7.039233e-03	k: 1266	n:190000
KS ci ratio: 3.564721e-02	ci left: 5.876922e-02	ci right 6.090739e-02	k: 11368	n:190000
ESRP1   190000 perm   47 sec   (4012 perm/sec)   p_kst 5.983158e-02   p_cons 6.663158e-03   p_joint 2.737895e-02

Joint ci ratio: 5.218386e-02	ci left: 2.672347e-02	ci right 2.816027e-02	k: 5487	n:200000
Cons ci ratio: 1.066066e-01	ci left: 6.356871e-03	ci right 7.077538e-03	k: 1342	n:200000
KS ci ratio: 3.475599e-02	ci left: 5.875974e-02	ci right 6.084304e-02	k: 11959	n:200000
ESRP1   200000 perm   51 sec   (3952 perm/sec)   p_kst 5.979500e-02   p_cons 6.710000e-03   p_joint 2.743500e-02

Joint ci ratio: 5.112454e-02	ci left: 2.653665e-02	ci right 2.793359e-02	k: 5718	n:210000
Cons ci ratio: 1.035634e-01	ci left: 6.425115e-03	ci right 7.131460e-03	k: 1422	n:210000
KS ci ratio: 3.382537e-02	ci left: 5.909190e-02	ci right 6.112979e-02	k: 12622	n:210000
ESRP1   210000 perm   54 sec   (3896 perm/sec)   p_kst 6.010476e-02   p_cons 6.771429e-03   p_joint 2.722857e-02

Joint ci ratio: 5.392703e-02	ci left: 2.282166e-02	ci right 2.409093e-02	k: 5159	n:220000
Cons ci ratio: 1.008343e-01	ci left: 6.478557e-03	ci right 7.170897e-03	k: 1500	n:220000
KS ci ratio: 3.302389e-02	ci left: 5.919607e-02	ci right 6.118826e-02	k: 13241	n:220000
ESRP1   220000 perm   57 sec   (3840 perm/sec)   p_kst 6.018636e-02   p_cons 6.818182e-03   p_joint 2.345000e-02

Joint ci ratio: 5.361078e-02	ci left: 2.210801e-02	ci right 2.333015e-02	k: 5224	n:230000
Cons ci ratio: 9.875188e-02	ci left: 6.468194e-03	ci right 7.144325e-03	k: 1564	n:230000
KS ci ratio: 3.229541e-02	ci left: 5.922698e-02	ci right 6.117542e-02	k: 13845	n:230000
ESRP1   230000 perm   61 sec   (3786 perm/sec)   p_kst 6.019565e-02   p_cons 6.800000e-03   p_joint 2.271304e-02

Outputting figure to mutsig2_images.part000000000058/ESRP1.4_2131_230000_0.060196_0.0068_0.022713.png
                gene_name: ESRP1
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.0068 
      ci_cons_bounds_left: 0.0065 
     ci_cons_bounds_right: 0.0071 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 40 percent done.
ESYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
ESYT1   10000 perm   2 sec   (5927 perm/sec)   p_kst 1.860000e-02   p_cons 2.147000e-01   p_joint 4.500000e-02

Joint ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
Cons ci ratio: 5.454306e-02	ci left: 1.996212e-01	ci right 2.108646e-01	k: 4104	n:20000
KS ci ratio: 2.038660e-01	ci left: 1.629772e-02	ci right 2.004424e-02	k: 362	n:20000
ESYT1   20000 perm   4 sec   (5321 perm/sec)   p_kst 1.810000e-02   p_cons 2.052000e-01   p_joint 4.970000e-02

Joint ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
Cons ci ratio: 4.462332e-02	ci left: 2.000141e-01	ci right 2.091765e-01	k: 6137	n:30000
KS ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
ESYT1   30000 perm   6 sec   (5084 perm/sec)   p_kst 1.766667e-02   p_cons 2.045667e-01   p_joint 2.530000e-02

Joint ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
Cons ci ratio: 3.786974e-02	ci left: 2.072583e-01	ci right 2.152836e-01	k: 8450	n:40000
KS ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
ESYT1   40000 perm   8 sec   (4924 perm/sec)   p_kst 1.837500e-02   p_cons 2.112500e-01   p_joint 3.217500e-02

Joint ci ratio: 7.855448e-02	ci left: 4.557340e-02	ci right 4.931937e-02	k: 2371	n:50000
Cons ci ratio: 3.389566e-02	ci left: 2.074504e-01	ci right 2.146232e-01	k: 10551	n:50000
KS ci ratio: 1.285419e-01	ci left: 1.708509e-02	ci right 1.945132e-02	k: 912	n:50000
ESYT1   50000 perm   10 sec   (4805 perm/sec)   p_kst 1.824000e-02   p_cons 2.110200e-01   p_joint 4.742000e-02

Joint ci ratio: 8.851898e-02	ci left: 3.024725e-02	ci right 3.306496e-02	k: 1898	n:60000
Cons ci ratio: 3.095851e-02	ci left: 2.075918e-01	ci right 2.141362e-01	k: 12651	n:60000
KS ci ratio: 1.156653e-01	ci left: 1.769585e-02	ci right 1.988438e-02	k: 1126	n:60000
ESYT1   60000 perm   13 sec   (4702 perm/sec)   p_kst 1.876667e-02   p_cons 2.108500e-01   p_joint 3.163333e-02

Joint ci ratio: 7.317106e-02	ci left: 3.794273e-02	ci right 4.083847e-02	k: 2756	n:70000
Cons ci ratio: 2.861617e-02	ci left: 2.083660e-01	ci right 2.144294e-01	k: 14797	n:70000
KS ci ratio: 1.069542e-01	ci left: 1.782061e-02	ci right 1.984812e-02	k: 1317	n:70000
ESYT1   70000 perm   15 sec   (4601 perm/sec)   p_kst 1.881429e-02   p_cons 2.113857e-01   p_joint 3.937143e-02

Joint ci ratio: 6.993587e-02	ci left: 3.646441e-02	ci right 3.911924e-02	k: 3022	n:80000
Cons ci ratio: 2.681927e-02	ci left: 2.079281e-01	ci right 2.135929e-01	k: 16860	n:80000
KS ci ratio: 9.655365e-02	ci left: 1.921190e-02	ci right 2.117311e-02	k: 1614	n:80000
ESYT1   80000 perm   18 sec   (4505 perm/sec)   p_kst 2.017500e-02   p_cons 2.107500e-01   p_joint 3.777500e-02

Outputting figure to mutsig2_images.part000000000058/ESYT1.4_3469_80000_0.020175_0.21075_0.037775.png
                gene_name: ESYT1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 42 percent done.
ETAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
ETAA1   10000 perm   2 sec   (6398 perm/sec)   p_kst 3.987000e-01   p_cons 2.900000e-02   p_joint 6.190000e-02

Joint ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
Cons ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
KS ci ratio: 3.465167e-02	ci left: 3.833812e-01	ci right 3.969508e-01	k: 7803	n:20000
ETAA1   20000 perm   3 sec   (5753 perm/sec)   p_kst 3.901500e-01   p_cons 2.930000e-02   p_joint 1.180500e-01

Joint ci ratio: 7.078956e-02	ci left: 8.944116e-02	ci right 9.603796e-02	k: 2781	n:30000
Cons ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
KS ci ratio: 2.819604e-02	ci left: 3.862702e-01	ci right 3.973508e-01	k: 11754	n:30000
ETAA1   30000 perm   5 sec   (5480 perm/sec)   p_kst 3.918000e-01   p_cons 2.943333e-02   p_joint 9.270000e-02

Joint ci ratio: 6.630861e-02	ci left: 7.767948e-02	ci right 8.303162e-02	k: 3213	n:40000
Cons ci ratio: 1.121251e-01	ci left: 2.798515e-02	ci right 3.133359e-02	k: 1185	n:40000
KS ci ratio: 2.453971e-02	ci left: 3.846670e-01	ci right 3.942490e-01	k: 15578	n:40000
ETAA1   40000 perm   8 sec   (5294 perm/sec)   p_kst 3.894500e-01   p_cons 2.962500e-02   p_joint 8.032500e-02

Joint ci ratio: 6.430429e-02	ci left: 6.695109e-02	ci right 7.141908e-02	k: 3458	n:50000
Cons ci ratio: 9.951241e-02	ci left: 2.860017e-02	ci right 3.161472e-02	k: 1504	n:50000
KS ci ratio: 2.189990e-02	ci left: 3.862402e-01	ci right 3.948125e-01	k: 19526	n:50000
ETAA1   50000 perm   10 sec   (5139 perm/sec)   p_kst 3.905200e-01   p_cons 3.008000e-02   p_joint 6.916000e-02

Outputting figure to mutsig2_images.part000000000058/ETAA1.4_2805_50000_0.39052_0.03008_0.06916.png
                gene_name: ETAA1
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 44 percent done.
ETV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
ETV3L   10000 perm   1 sec   (6864 perm/sec)   p_kst 8.501000e-01   p_cons 6.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETV3L.4_1106_10000_0.8501_0.6068_1.png
                gene_name: ETV3L
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ETV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
Cons ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KS ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
ETV6   10000 perm   2 sec   (6399 perm/sec)   p_kst 1.611000e-01   p_cons 4.140000e-02   p_joint 1.111000e-01

Joint ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
Cons ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
KS ci ratio: 6.250170e-02	ci left: 1.591886e-01	ci right 1.695091e-01	k: 3286	n:20000
ETV6   20000 perm   3 sec   (5776 perm/sec)   p_kst 1.643000e-01   p_cons 4.095000e-02   p_joint 1.005500e-01

Joint ci ratio: 8.257658e-02	ci left: 6.697440e-02	ci right 7.277590e-02	k: 2095	n:30000
Cons ci ratio: 1.149767e-01	ci left: 3.515152e-02	ci right 3.947201e-02	k: 1118	n:30000
KS ci ratio: 5.102340e-02	ci left: 1.601889e-01	ci right 1.686095e-01	k: 4931	n:30000
ETV6   30000 perm   5 sec   (5522 perm/sec)   p_kst 1.643667e-01   p_cons 3.726667e-02   p_joint 6.983333e-02

Joint ci ratio: 8.173557e-02	ci left: 5.214823e-02	ci right 5.661674e-02	k: 2174	n:40000
Cons ci ratio: 9.909120e-02	ci left: 3.578135e-02	ci right 3.953616e-02	k: 1505	n:40000
KS ci ratio: 4.407942e-02	ci left: 1.614240e-01	ci right 1.687247e-01	k: 6602	n:40000
ETV6   40000 perm   7 sec   (5352 perm/sec)   p_kst 1.650500e-01   p_cons 3.762500e-02   p_joint 5.435000e-02

Outputting figure to mutsig2_images.part000000000058/ETV6.4_1391_40000_0.16505_0.037625_0.05435.png
                gene_name: ETV6
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 47 percent done.
ERCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
ERCC2   10000 perm   2 sec   (6624 perm/sec)   p_kst 2.045000e-01   p_cons 9.062000e-01   p_joint 3.368000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC2.3_2432_10000_0.2045_0.9062_0.3368.png
                gene_name: ERCC2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 49 percent done.
ERCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
ERCC4   10000 perm   2 sec   (6458 perm/sec)   p_kst 3.147000e-01   p_cons 7.393000e-01   p_joint 4.967000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC4.3_2795_10000_0.3147_0.7393_0.4967.png
                gene_name: ERCC4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 51 percent done.
ERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
Cons ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
KS ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
ERG   10000 perm   1 sec   (6847 perm/sec)   p_kst 7.516000e-01   p_cons 5.664000e-01   p_joint 7.951000e-01

Outputting figure to mutsig2_images.part000000000058/ERG.3_1523_10000_0.7516_0.5664_0.7951.png
                gene_name: ERG
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 53 percent done.
ERGIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
Cons ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
KS ci ratio: 1.424469e-02	ci left: 8.769477e-01	ci right 8.896281e-01	k: 8834	n:10000
ERGIC3   10000 perm   1 sec   (7719 perm/sec)   p_kst 8.834000e-01   p_cons 6.368000e-01   p_joint 8.920000e-01

Outputting figure to mutsig2_images.part000000000058/ERGIC3.3_1223_10000_0.8834_0.6368_0.892.png
                gene_name: ERGIC3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 55 percent done.
ERICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
Cons ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
KS ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
ERICH1   10000 perm   1 sec   (7113 perm/sec)   p_kst 6.236000e-01   p_cons 6.500000e-02   p_joint 9.090000e-02

Joint ci ratio: 5.770953e-02	ci left: 1.820125e-01	ci right 1.928785e-01	k: 3748	n:20000
Cons ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
KS ci ratio: 2.160500e-02	ci left: 6.152877e-01	ci right 6.287768e-01	k: 12441	n:20000
ERICH1   20000 perm   3 sec   (6305 perm/sec)   p_kst 6.220500e-01   p_cons 6.685000e-02   p_joint 1.874000e-01

Joint ci ratio: 4.542482e-02	ci left: 1.943296e-01	ci right 2.033955e-01	k: 5965	n:30000
Cons ci ratio: 8.383035e-02	ci left: 6.507850e-02	ci right 7.080552e-02	k: 2037	n:30000
KS ci ratio: 1.770390e-02	ci left: 6.148470e-01	ci right 6.258630e-01	k: 18611	n:30000
ERICH1   30000 perm   5 sec   (5984 perm/sec)   p_kst 6.203667e-01   p_cons 6.790000e-02   p_joint 1.988333e-01

Outputting figure to mutsig2_images.part000000000058/ERICH1.3_1356_30000_0.62037_0.0679_0.19883.png
                gene_name: ERICH1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
ERLIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
Cons ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
KS ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
ERLIN2   10000 perm   1 sec   (7032 perm/sec)   p_kst 4.319000e-01   p_cons 5.789000e-01   p_joint 5.036000e-01

Outputting figure to mutsig2_images.part000000000058/ERLIN2.3_1103_10000_0.4319_0.5789_0.5036.png
                gene_name: ERLIN2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 58 percent done.
ERN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
ERN1   10000 perm   2 sec   (6364 perm/sec)   p_kst 5.832000e-01   p_cons 1.541000e-01   p_joint 5.338000e-01

Outputting figure to mutsig2_images.part000000000058/ERN1.3_3022_10000_0.5832_0.1541_0.5338.png
                gene_name: ERN1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 60 percent done.
ERP44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
Cons ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
KS ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
ERP44   10000 perm   1 sec   (7216 perm/sec)   p_kst 2.764000e-01   p_cons 2.015000e-01   p_joint 4.395000e-01

Outputting figure to mutsig2_images.part000000000058/ERP44.3_1269_10000_0.2764_0.2015_0.4395.png
                gene_name: ERP44
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
ESPNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
Cons ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
KS ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
ESPNL   10000 perm   2 sec   (6340 perm/sec)   p_kst 5.089000e-01   p_cons 9.161000e-01   p_joint 6.841000e-01

Outputting figure to mutsig2_images.part000000000058/ESPNL.3_3054_10000_0.5089_0.9161_0.6841.png
                gene_name: ESPNL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 64 percent done.
ESR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
ESR2   10000 perm   1 sec   (6960 perm/sec)   p_kst 7.797000e-01   p_cons 9.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESR2.3_1711_10000_0.7797_0.9373_1.png
                gene_name: ESR2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ETS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
Cons ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
KS ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
ETS2   10000 perm   1 sec   (7043 perm/sec)   p_kst 5.295000e-01   p_cons 4.249000e-01   p_joint 5.398000e-01

Outputting figure to mutsig2_images.part000000000058/ETS2.3_1446_10000_0.5295_0.4249_0.5398.png
                gene_name: ETS2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 67 percent done.
ETV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
KS ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
ETV1   10000 perm   1 sec   (7013 perm/sec)   p_kst 5.603000e-01   p_cons 5.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETV1.3_1547_10000_0.5603_0.5449_1.png
                gene_name: ETV1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
EVI2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
EVI2A   10000 perm   1 sec   (7307 perm/sec)   p_kst 2.350000e-02   p_cons 7.666000e-01   p_joint 6.490000e-02

Joint ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
Cons ci ratio: 1.463522e-02	ci left: 7.762120e-01	ci right 7.877059e-01	k: 15640	n:20000
KS ci ratio: 1.802519e-01	ci left: 2.101484e-02	ci right 2.522538e-02	k: 461	n:20000
EVI2A   20000 perm   3 sec   (6470 perm/sec)   p_kst 2.305000e-02   p_cons 7.820000e-01   p_joint 5.960000e-02

Joint ci ratio: 7.316202e-02	ci left: 8.412923e-02	ci right 9.055095e-02	k: 2619	n:30000
Cons ci ratio: 1.197761e-02	ci left: 7.764779e-01	ci right 7.858676e-01	k: 23436	n:30000
KS ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
EVI2A   30000 perm   5 sec   (6143 perm/sec)   p_kst 2.333333e-02   p_cons 7.812000e-01   p_joint 8.730000e-02

Joint ci ratio: 8.201508e-02	ci left: 5.180501e-02	ci right 5.626002e-02	k: 2160	n:40000
Cons ci ratio: 1.095158e-02	ci left: 7.578707e-01	ci right 7.662413e-01	k: 30483	n:40000
KS ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
EVI2A   40000 perm   7 sec   (5929 perm/sec)   p_kst 2.380000e-02   p_cons 7.620750e-01   p_joint 5.400000e-02

Joint ci ratio: 4.364895e-02	ci left: 1.358598e-01	ci right 1.419422e-01	k: 6944	n:50000
Cons ci ratio: 9.781210e-03	ci left: 7.588453e-01	ci right 7.663242e-01	k: 38130	n:50000
KS ci ratio: 1.051577e-01	ci left: 2.561630e-02	ci right 2.847896e-02	k: 1351	n:50000
EVI2A   50000 perm   9 sec   (5763 perm/sec)   p_kst 2.702000e-02   p_cons 7.626000e-01   p_joint 1.388800e-01

Joint ci ratio: 3.856277e-02	ci left: 1.440762e-01	ci right 1.497580e-01	k: 8814	n:60000
Cons ci ratio: 8.929395e-03	ci left: 7.591577e-01	ci right 7.659835e-01	k: 45755	n:60000
KS ci ratio: 9.649801e-02	ci left: 2.547354e-02	ci right 2.807251e-02	k: 1605	n:60000
EVI2A   60000 perm   11 sec   (5622 perm/sec)   p_kst 2.675000e-02   p_cons 7.625833e-01   p_joint 1.469000e-01

Outputting figure to mutsig2_images.part000000000058/EVI2A.3_788_60000_0.02675_0.76258_0.1469.png
                gene_name: EVI2A
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 71 percent done.
EVI2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
EVI2B   10000 perm   1 sec   (7194 perm/sec)   p_kst 9.318000e-01   p_cons 7.640000e-02   p_joint 3.343000e-01

Joint ci ratio: 5.403010e-02	ci left: 2.026897e-01	ci right 2.139953e-01	k: 4166	n:20000
Cons ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
KS ci ratio: 7.728485e-03	ci left: 9.242277e-01	ci right 9.314473e-01	k: 18558	n:20000
EVI2B   20000 perm   3 sec   (6352 perm/sec)   p_kst 9.279000e-01   p_cons 7.165000e-02   p_joint 2.083000e-01

Outputting figure to mutsig2_images.part000000000058/EVI2B.3_1351_20000_0.9279_0.07165_0.2083.png
                gene_name: EVI2B
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 73 percent done.
ERI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
KS ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
ERI3   10000 perm   1 sec   (7673 perm/sec)   p_kst 2.102000e-01   p_cons 2.268000e-01   p_joint 2.153000e-01

Outputting figure to mutsig2_images.part000000000058/ERI3.2_1050_10000_0.2102_0.2268_0.2153.png
                gene_name: ERI3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 75 percent done.
ERLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
KS ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
ERLEC1   10000 perm   1 sec   (7187 perm/sec)   p_kst 7.584000e-01   p_cons 1.203000e-01   p_joint 1

Joint ci ratio: 6.360495e-02	ci left: 1.544997e-01	ci right 1.646994e-01	k: 3191	n:20000
Cons ci ratio: 7.497220e-02	ci left: 1.157235e-01	ci right 1.247872e-01	k: 2404	n:20000
KS ci ratio: 1.557644e-02	ci left: 7.540185e-01	ci right 7.659058e-01	k: 15200	n:20000
ERLEC1   20000 perm   3 sec   (6409 perm/sec)   p_kst 7.600000e-01   p_cons 1.202000e-01   p_joint 1.595500e-01

Outputting figure to mutsig2_images.part000000000058/ERLEC1.2_1508_20000_0.76_0.1202_0.15955.png
                gene_name: ERLEC1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 76 percent done.
ERMAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
KS ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
ERMAP   10000 perm   1 sec   (7590 perm/sec)   p_kst 8.911000e-01   p_cons 4.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERMAP.2_1468_10000_0.8911_0.4476_1.png
                gene_name: ERMAP
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ERMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
KS ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
ERMN   10000 perm   1 sec   (7699 perm/sec)   p_kst 9.452000e-01   p_cons 4.060000e-02   p_joint 7.340000e-02

Joint ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
Cons ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
KS ci ratio: 6.711915e-03	ci left: 9.413908e-01	ci right 9.477792e-01	k: 18893	n:20000
ERMN   20000 perm   3 sec   (6785 perm/sec)   p_kst 9.446500e-01   p_cons 4.070000e-02   p_joint 5.480000e-02

Joint ci ratio: 9.512983e-02	ci left: 5.101286e-02	ci right 5.614069e-02	k: 1606	n:30000
Cons ci ratio: 1.095016e-01	ci left: 3.871914e-02	ci right 4.323697e-02	k: 1228	n:30000
KS ci ratio: 5.419130e-03	ci left: 9.431778e-01	ci right 9.483354e-01	k: 28374	n:30000
ERMN   30000 perm   5 sec   (6435 perm/sec)   p_kst 9.458000e-01   p_cons 4.093333e-02   p_joint 5.353333e-02

Joint ci ratio: 8.189496e-02	ci left: 5.195210e-02	ci right 5.641290e-02	k: 2166	n:40000
Cons ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
KS ci ratio: 4.637665e-03	ci left: 9.447594e-01	ci right 9.491755e-01	k: 37880	n:40000
ERMN   40000 perm   7 sec   (6143 perm/sec)   p_kst 9.470000e-01   p_cons 4.130000e-02   p_joint 5.415000e-02

Outputting figure to mutsig2_images.part000000000058/ERMN.2_910_40000_0.947_0.0413_0.05415.png
                gene_name: ERMN
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 80 percent done.
ERO1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
Cons ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
KS ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
ERO1L   10000 perm   1 sec   (7404 perm/sec)   p_kst 5.474000e-01   p_cons 3.968000e-01   p_joint 4.616000e-01

Outputting figure to mutsig2_images.part000000000058/ERO1L.2_1471_10000_0.5474_0.3968_0.4616.png
                gene_name: ERO1L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
ERP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
Cons ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
KS ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
ERP27   10000 perm   1 sec   (7688 perm/sec)   p_kst 3.163000e-01   p_cons 7.114000e-01   p_joint 5.754000e-01

Outputting figure to mutsig2_images.part000000000058/ERP27.2_850_10000_0.3163_0.7114_0.5754.png
                gene_name: ERP27
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 84 percent done.
ERRFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.776735e-02	ci left: 8.220852e-01	ci right 8.369224e-01	k: 8296	n:10000
Cons ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
ERRFI1   10000 perm   1 sec   (7295 perm/sec)   p_kst 4.837000e-01   p_cons 7.529000e-01   p_joint 8.296000e-01

Outputting figure to mutsig2_images.part000000000058/ERRFI1.2_1401_10000_0.4837_0.7529_0.8296.png
                gene_name: ERRFI1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 85 percent done.
ESCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
KS ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
ESCO2   10000 perm   1 sec   (7233 perm/sec)   p_kst 4.363000e-01   p_cons 6.147000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000058/ESCO2.2_1846_10000_0.4363_0.6147_0.6803.png
                gene_name: ESCO2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 87 percent done.
ESRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
ESRP2   10000 perm   1 sec   (6917 perm/sec)   p_kst 8.009000e-01   p_cons 9.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESRP2.2_2214_10000_0.8009_0.9758_1.png
                gene_name: ESRP2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ESX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
Cons ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
ESX1   10000 perm   1 sec   (7366 perm/sec)   p_kst 1.070000e-02   p_cons 5.819000e-01   p_joint 1.707000e-01

Joint ci ratio: 4.843583e-02	ci left: 2.406881e-01	ci right 2.526857e-01	k: 4933	n:20000
Cons ci ratio: 2.206932e-02	ci left: 6.052057e-01	ci right 6.187617e-01	k: 12240	n:20000
KS ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
ESX1   20000 perm   3 sec   (6452 perm/sec)   p_kst 1.140000e-02   p_cons 6.120000e-01   p_joint 2.466500e-01

Joint ci ratio: 3.152546e-02	ci left: 3.347050e-01	ci right 3.454593e-01	k: 10202	n:30000
Cons ci ratio: 1.805020e-02	ci left: 6.056566e-01	ci right 6.167219e-01	k: 18336	n:30000
KS ci ratio: 2.071094e-01	ci left: 1.057722e-02	ci right 1.305201e-02	k: 353	n:30000
ESX1   30000 perm   5 sec   (6145 perm/sec)   p_kst 1.176667e-02   p_cons 6.112000e-01   p_joint 3.400667e-01

Joint ci ratio: 2.838396e-02	ci left: 3.182684e-01	ci right 3.274573e-01	k: 12914	n:40000
Cons ci ratio: 1.566333e-02	ci left: 6.054503e-01	ci right 6.150337e-01	k: 24410	n:40000
KS ci ratio: 1.813164e-01	ci left: 1.050210e-02	ci right 1.261970e-02	k: 461	n:40000
ESX1   40000 perm   7 sec   (5942 perm/sec)   p_kst 1.152500e-02   p_cons 6.102500e-01   p_joint 3.228500e-01

Joint ci ratio: 2.538826e-02	ci left: 3.187421e-01	ci right 3.269585e-01	k: 16142	n:50000
Cons ci ratio: 1.396829e-02	ci left: 6.073717e-01	ci right 6.159353e-01	k: 30583	n:50000
KS ci ratio: 1.628177e-01	ci left: 1.052632e-02	ci right 1.241104e-02	k: 572	n:50000
ESX1   50000 perm   9 sec   (5780 perm/sec)   p_kst 1.144000e-02   p_cons 6.116600e-01   p_joint 3.228400e-01

Joint ci ratio: 2.531467e-02	ci left: 2.819048e-01	ci right 2.891493e-01	k: 17131	n:60000
Cons ci ratio: 1.275334e-02	ci left: 6.076698e-01	ci right 6.154861e-01	k: 36695	n:60000
KS ci ratio: 1.491373e-01	ci left: 1.053382e-02	ci right 1.224727e-02	k: 682	n:60000
ESX1   60000 perm   11 sec   (5642 perm/sec)   p_kst 1.136667e-02   p_cons 6.115833e-01   p_joint 2.855167e-01

Joint ci ratio: 2.393080e-02	ci left: 2.737724e-01	ci right 2.804176e-01	k: 19396	n:70000
Cons ci ratio: 1.177251e-02	ci left: 6.093658e-01	ci right 6.165963e-01	k: 42909	n:70000
KS ci ratio: 1.384999e-01	ci left: 1.053015e-02	ci right 1.211075e-02	k: 791	n:70000
ESX1   70000 perm   13 sec   (5519 perm/sec)   p_kst 1.130000e-02   p_cons 6.129857e-01   p_joint 2.770857e-01

Joint ci ratio: 2.280101e-02	ci left: 2.667015e-01	ci right 2.728652e-01	k: 21582	n:80000
Cons ci ratio: 1.100693e-02	ci left: 6.098274e-01	ci right 6.165894e-01	k: 49057	n:80000
KS ci ratio: 1.300019e-01	ci left: 1.050648e-02	ci right 1.197929e-02	k: 898	n:80000
ESX1   80000 perm   15 sec   (5401 perm/sec)   p_kst 1.122500e-02   p_cons 6.132125e-01   p_joint 2.697750e-01

Joint ci ratio: 2.147815e-02	ci left: 2.672232e-01	ci right 2.730361e-01	k: 24311	n:90000
Cons ci ratio: 1.037602e-02	ci left: 6.100869e-01	ci right 6.164613e-01	k: 55195	n:90000
KS ci ratio: 1.218005e-01	ci left: 1.068433e-02	ci right 1.208076e-02	k: 1023	n:90000
ESX1   90000 perm   17 sec   (5289 perm/sec)   p_kst 1.136667e-02   p_cons 6.132778e-01   p_joint 2.701222e-01

Joint ci ratio: 1.929958e-02	ci left: 2.892328e-01	ci right 2.948792e-01	k: 29205	n:100000
Cons ci ratio: 9.852448e-03	ci left: 6.098228e-01	ci right 6.158707e-01	k: 61285	n:100000
KS ci ratio: 1.143752e-01	ci left: 1.094554e-02	ci right 1.228301e-02	k: 1160	n:100000
ESX1   100000 perm   19 sec   (5185 perm/sec)   p_kst 1.160000e-02   p_cons 6.128500e-01   p_joint 2.920500e-01

Joint ci ratio: 1.628189e-02	ci left: 3.422811e-01	ci right 3.479089e-01	k: 37960	n:110000
Cons ci ratio: 9.401600e-03	ci left: 6.095771e-01	ci right 6.153442e-01	k: 67371	n:110000
KS ci ratio: 1.088415e-01	ci left: 1.101981e-02	ci right 1.229704e-02	k: 1281	n:110000
ESX1   110000 perm   22 sec   (5088 perm/sec)   p_kst 1.164545e-02   p_cons 6.124636e-01   p_joint 3.450909e-01

Joint ci ratio: 1.550033e-02	ci left: 3.449717e-01	ci right 3.503690e-01	k: 41720	n:120000
Cons ci ratio: 9.000980e-03	ci left: 6.097200e-01	ci right 6.152412e-01	k: 73498	n:120000
KS ci ratio: 1.047987e-01	ci left: 1.092065e-02	ci right 1.213646e-02	k: 1382	n:120000
ESX1   120000 perm   24 sec   (4979 perm/sec)   p_kst 1.151667e-02   p_cons 6.124833e-01   p_joint 3.476667e-01

Joint ci ratio: 1.495450e-02	ci left: 3.431911e-01	ci right 3.483696e-01	k: 44951	n:130000
Cons ci ratio: 8.637758e-03	ci left: 6.103845e-01	ci right 6.156874e-01	k: 79695	n:130000
KS ci ratio: 1.007981e-01	ci left: 1.091999e-02	ci right 1.208657e-02	k: 1494	n:130000
ESX1   130000 perm   27 sec   (4891 perm/sec)   p_kst 1.149231e-02   p_cons 6.130385e-01   p_joint 3.457769e-01

Joint ci ratio: 1.434656e-02	ci left: 3.452977e-01	ci right 3.502944e-01	k: 48691	n:140000
Cons ci ratio: 8.317591e-03	ci left: 6.108218e-01	ci right 6.159307e-01	k: 85873	n:140000
KS ci ratio: 9.704005e-02	ci left: 1.096201e-02	ci right 1.208693e-02	k: 1612	n:140000
ESX1   140000 perm   29 sec   (4803 perm/sec)   p_kst 1.151429e-02   p_cons 6.133786e-01   p_joint 3.477929e-01

Outputting figure to mutsig2_images.part000000000058/ESX1.2_1237_140000_0.011514_0.61338_0.34779.png
                gene_name: ESX1
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.35 

Current progress: 91 percent done.
ESYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
Cons ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
KS ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
ESYT3   10000 perm   1 sec   (6700 perm/sec)   p_kst 2.156000e-01   p_cons 2.747000e-01   p_joint 3.748000e-01

Outputting figure to mutsig2_images.part000000000058/ESYT3.2_2753_10000_0.2156_0.2747_0.3748.png
                gene_name: ESYT3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 93 percent done.
EVX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
KS ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
EVX1   10000 perm   1 sec   (7430 perm/sec)   p_kst 4.831000e-01   p_cons 3.680000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.428166e-01	ci left: 3.370219e-02	ci right 3.893373e-02	k: 725	n:20000
KS ci ratio: 2.883370e-02	ci left: 4.733042e-01	ci right 4.872016e-01	k: 9605	n:20000
EVX1   20000 perm   3 sec   (6584 perm/sec)   p_kst 4.802500e-01   p_cons 3.625000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
KS ci ratio: 2.352202e-02	ci left: 4.750317e-01	ci right 4.863720e-01	k: 14421	n:30000
EVX1   30000 perm   5 sec   (6270 perm/sec)   p_kst 4.807000e-01   p_cons 3.526667e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.017906e-01	ci left: 3.392739e-02	ci right 3.759041e-02	k: 1429	n:40000
KS ci ratio: 2.036482e-02	ci left: 4.759427e-01	ci right 4.857601e-01	k: 19234	n:40000
EVX1   40000 perm   7 sec   (6062 perm/sec)   p_kst 4.808500e-01   p_cons 3.572500e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 9.111062e-02	ci left: 3.407113e-02	ci right 3.734306e-02	k: 1784	n:50000
KS ci ratio: 1.824384e-02	ci left: 4.756721e-01	ci right 4.844502e-01	k: 24003	n:50000
EVX1   50000 perm   8 sec   (5903 perm/sec)   p_kst 4.800600e-01   p_cons 3.568000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000058/EVX1.2_1236_50000_0.48006_0.03568_1.png
                gene_name: EVX1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
EVX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
Cons ci ratio: 1.114312e-02	ci left: 9.199722e-01	ci right 9.303785e-01	k: 9253	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
EVX2   10000 perm   1 sec   (7279 perm/sec)   p_kst 6.400000e-02   p_cons 9.253000e-01   p_joint 4.873000e-01

Joint ci ratio: 5.309785e-02	ci left: 2.084319e-01	ci right 2.198513e-01	k: 4282	n:20000
Cons ci ratio: 7.471429e-03	ci left: 9.287299e-01	ci right 9.357438e-01	k: 18646	n:20000
KS ci ratio: 1.043556e-01	ci left: 6.245098e-02	ci right 6.937587e-02	k: 1317	n:20000
EVX2   20000 perm   3 sec   (6435 perm/sec)   p_kst 6.585000e-02   p_cons 9.323000e-01   p_joint 2.141000e-01

Joint ci ratio: 1.445697e-02	ci left: 7.050295e-01	ci right 7.153298e-01	k: 21306	n:30000
Cons ci ratio: 6.159212e-03	ci left: 9.281413e-01	ci right 9.339083e-01	k: 27932	n:30000
KS ci ratio: 8.443197e-02	ci left: 6.419615e-02	ci right 6.988805e-02	k: 2010	n:30000
EVX2   30000 perm   5 sec   (6101 perm/sec)   p_kst 6.700000e-02   p_cons 9.310667e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000058/EVX2.2_1441_30000_0.067_0.93107_0.7102.png
                gene_name: EVX2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 96 percent done.
EXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
KS ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
EXD1   10000 perm   1 sec   (7649 perm/sec)   p_kst 4.438000e-01   p_cons 4.223000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/EXD1.2_1585_10000_0.4438_0.4223_1.png
                gene_name: EXD1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
EXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
EXD2   10000 perm   1 sec   (7353 perm/sec)   p_kst 5.287000e-01   p_cons 2.103000e-01   p_joint 5.674000e-01

Outputting figure to mutsig2_images.part000000000058/EXD2.2_1519_10000_0.5287_0.2103_0.5674.png
                gene_name: EXD2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000058
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 58 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4421924: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000059> was used as the working directory.
Started at Wed Oct 24 17:43:32 2012
Results reported at Wed Oct 24 18:08:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000059.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000059.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 59  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000059.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1582.73 sec.
    Max Memory :      5304 MB
    Max Swap   :      7679 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
59
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 59
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 59: processing genes 5248 - 5338
Calculating significance of each gene.
Using projection method.
5248	EXO1	1
5249	EXOC1	1
5250	EXOC2	9.749789e-01
5251	EXOC3	1
5252	EXOC3L	8.143098e-01
5253	EXOC3L2	8.641556e-01
5254	EXOC4	3.835493e-01
5255	EXOC5	3.799660e-01
5256	EXOC6	7.005713e-02
5257	EXOC6B	1
5258	EXOC7	9.181219e-01
5259	EXOC8	9.433856e-01
5260	EXOG	5.340980e-01
5261	EXOSC1	7.500572e-01
5262	EXOSC10	9.182466e-01
5263	EXOSC2	1
5264	EXOSC3	8.215336e-01
5265	EXOSC4	7.335877e-01
5266	EXOSC5	1
5267	EXOSC7	1.907449e-01
5268	EXOSC8	1
5269	EXOSC9	5.161823e-01
5270	EXPH5	2.223199e-01
5271	EXT1	9.618747e-01
5272	EXT2	4.237476e-01
5273	EXTL1	7.779778e-01
5274	EXTL2	1
5275	EXTL3	9.893032e-01
5276	EYA1	9.213707e-01
5277	EYA2	1
5278	EYA3	5.424300e-01
5279	EYA4	1.385421e-03
5280	EZH1	9.019540e-01
5281	EZH2	9.022612e-01
5282	EZR	9.610253e-01
5283	F10	6.473689e-01
5284	F11	3.453009e-02
5285	F11R	5.942647e-01
5286	F12	1
5287	F13A1	1
5288	F13B	2.494334e-01
5289	F2	8.334690e-01
5290	F2R	1.724117e-01
5291	F2RL1	8.043315e-01
5292	F2RL2	4.328938e-02
5293	F2RL3	4.665135e-01
5294	F3	6.025911e-01
5295	F5	8.963240e-01
5296	F7	8.903072e-01
5297	F8	9.201161e-01
5298	F9	5.579293e-03
5299	FA2H	1
5300	FAAH	9.087008e-01
5301	FAAH2	1
5302	FABP1	2.605187e-01
5303	FABP12	5.021863e-05
5304	FABP2	5.446428e-01
5305	FABP3	1.415468e-01
5306	FABP4	1
5307	FABP5	2.468075e-01
5308	FABP6	5.903775e-01
5309	FABP7	1
5310	FABP9	6.203318e-02
5311	FADD	4.611284e-01
5312	FADS1	1
5313	FADS2	8.064042e-01
5314	FADS3	1
5315	FADS6	8.663906e-01
5316	FAF1	1
5317	FAF2	7.775456e-01
5318	FAH	9.606778e-01
5319	FAHD1	1
5320	FAHD2A	6.475862e-01
5321	FAHD2B	7.666824e-01
5322	FAIM	6.972739e-01
5323	FAIM2	5.080168e-01
5324	FAIM3	4.486259e-01
5325	FAM100A	1
5326	FAM100B	1
5327	FAM101A	1
5328	FAM101B	1
5329	FAM102A	1
5330	FAM102B	1
5331	FAM103A1	1
5332	FAM104A	1.857224e-01
5333	FAM104B	1
5334	FAM105A	5.213632e-01
5335	FAM105B	5.594851e-01
5336	FAM107A	1
5337	FAM107B	1
5338	FAM108A1	8.767955e-01
Done

Running MutSig 2:
Scatter job 59: processing genes 5248 - 5338
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
Cons ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
KS ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
F5   10000 perm   3 sec   (3353 perm/sec)   p_kst 2.654000e-01   p_cons 3.840000e-02   p_joint 4.890000e-02

Joint ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
Cons ci ratio: 1.394623e-01	ci left: 3.534423e-02	ci right 4.069115e-02	k: 759	n:20000
KS ci ratio: 4.644255e-02	ci left: 2.565112e-01	ci right 2.687579e-01	k: 5252	n:20000
F5   20000 perm   8 sec   (2438 perm/sec)   p_kst 2.626000e-01   p_cons 3.795000e-02   p_joint 6.990000e-02

Joint ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
Cons ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
KS ci ratio: 3.746073e-02	ci left: 2.623645e-01	ci right 2.724139e-01	k: 8021	n:30000
F5   30000 perm   12 sec   (2584 perm/sec)   p_kst 2.673667e-01   p_cons 3.806667e-02   p_joint 4.603333e-02

Joint ci ratio: 9.071442e-02	ci left: 4.257325e-02	ci right 4.664320e-02	k: 1783	n:40000
Cons ci ratio: 9.623840e-02	ci left: 3.790521e-02	ci right 4.176196e-02	k: 1592	n:40000
KS ci ratio: 3.241096e-02	ci left: 2.634153e-01	ci right 2.721185e-01	k: 10710	n:40000
F5   40000 perm   15 sec   (2652 perm/sec)   p_kst 2.677500e-01   p_cons 3.980000e-02   p_joint 4.457500e-02

Outputting figure to mutsig2_images.part000000000059/F5.23_6775_40000_0.26775_0.0398_0.044575.png
                gene_name: F5
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 2 percent done.
F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
Cons ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
KS ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
F8   10000 perm   3 sec   (3403 perm/sec)   p_kst 1.930000e-01   p_cons 8.692000e-01   p_joint 3.637000e-01

Outputting figure to mutsig2_images.part000000000059/F8.23_7188_10000_0.193_0.8692_0.3637.png
                gene_name: F8
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 4 percent done.
EXPH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
KS ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
EXPH5   10000 perm   3 sec   (3929 perm/sec)   p_kst 9.708000e-01   p_cons 7.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXPH5.16_5994_10000_0.9708_0.711_1.png
                gene_name: EXPH5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
F13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
Cons ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
F13B   10000 perm   2 sec   (4465 perm/sec)   p_kst 1.542000e-01   p_cons 6.598000e-01   p_joint 3.239000e-01

Outputting figure to mutsig2_images.part000000000059/F13B.16_2034_10000_0.1542_0.6598_0.3239.png
                gene_name: F13B
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 8 percent done.
EYA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
Cons ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
KS ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
EYA4   10000 perm   2 sec   (4905 perm/sec)   p_kst 6.801000e-01   p_cons 3.188000e-01   p_joint 6.354000e-01

Outputting figure to mutsig2_images.part000000000059/EYA4.13_2101_10000_0.6801_0.3188_0.6354.png
                gene_name: EYA4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 10 percent done.
F13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
Cons ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
F13A1   10000 perm   2 sec   (5088 perm/sec)   p_kst 9.368000e-01   p_cons 4.380000e-01   p_joint 7.528000e-01

Outputting figure to mutsig2_images.part000000000059/F13A1.13_2255_10000_0.9368_0.438_0.7528.png
                gene_name: F13A1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 12 percent done.
EYA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
Cons ci ratio: 3.819582e-02	ci left: 5.030509e-01	ci right 5.227416e-01	k: 5129	n:10000
KS ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
EYA1   10000 perm   2 sec   (5019 perm/sec)   p_kst 4.458000e-01   p_cons 5.129000e-01   p_joint 5.508000e-01

Outputting figure to mutsig2_images.part000000000059/EYA1.10_1872_10000_0.4458_0.5129_0.5508.png
                gene_name: EYA1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 14 percent done.
EXOC6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
KS ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
EXOC6   10000 perm   2 sec   (4703 perm/sec)   p_kst 8.839000e-01   p_cons 7.855000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOC6.8_2593_10000_0.8839_0.7855_1.png
                gene_name: EXOC6
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
EXOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
Cons ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
KS ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
EXOC2   10000 perm   2 sec   (4811 perm/sec)   p_kst 2.828000e-01   p_cons 7.860000e-02   p_joint 1.303000e-01

Joint ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
Cons ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
KS ci ratio: 4.447043e-02	ci left: 2.735364e-01	ci right 2.860277e-01	k: 5595	n:20000
EXOC2   20000 perm   5 sec   (4387 perm/sec)   p_kst 2.797500e-01   p_cons 7.165000e-02   p_joint 9.075000e-02

Outputting figure to mutsig2_images.part000000000059/EXOC2.8_2883_20000_0.27975_0.07165_0.09075.png
                gene_name: EXOC2
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 18 percent done.
EZH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
KS ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
EZH2   10000 perm   2 sec   (5133 perm/sec)   p_kst 9.699000e-01   p_cons 6.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EZH2.8_2332_10000_0.9699_0.6442_1.png
                gene_name: EZH2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
Cons ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
KS ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
F11   10000 perm   2 sec   (5323 perm/sec)   p_kst 8.555000e-01   p_cons 2.937000e-01   p_joint 6.297000e-01

Outputting figure to mutsig2_images.part000000000059/F11.8_1934_10000_0.8555_0.2937_0.6297.png
                gene_name: F11
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 22 percent done.
F9
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
Cons ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
KS ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
F9   10000 perm   2 sec   (5773 perm/sec)   p_kst 6.779000e-01   p_cons 2.369000e-01   p_joint 5.131000e-01

Outputting figure to mutsig2_images.part000000000059/F9.7_1418_10000_0.6779_0.2369_0.5131.png
                gene_name: F9
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 24 percent done.
EXT2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
EXT2   10000 perm   2 sec   (5432 perm/sec)   p_kst 6.554000e-01   p_cons 1.700000e-03   p_joint 3.770000e-02

Joint ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
Cons ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
KS ci ratio: 2.002265e-02	ci left: 6.504739e-01	ci right 6.636804e-01	k: 13142	n:20000
EXT2   20000 perm   4 sec   (4871 perm/sec)   p_kst 6.571000e-01   p_cons 1.950000e-03   p_joint 2.020000e-02

Joint ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
Cons ci ratio: 5.280792e-01	ci left: 1.352496e-03	ci right 2.347965e-03	k: 54	n:30000
KS ci ratio: 1.648550e-02	ci left: 6.479167e-01	ci right 6.587203e-01	k: 19600	n:30000
EXT2   30000 perm   6 sec   (4638 perm/sec)   p_kst 6.533333e-01   p_cons 1.800000e-03   p_joint 2.190000e-02

Joint ci ratio: 1.206185e-01	ci left: 2.417129e-02	ci right 2.729807e-02	k: 1028	n:40000
Cons ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
KS ci ratio: 1.355041e-02	ci left: 6.719907e-01	ci right 6.811836e-01	k: 27064	n:40000
EXT2   40000 perm   9 sec   (4511 perm/sec)   p_kst 6.766000e-01   p_cons 1.750000e-03   p_joint 2.570000e-02

Joint ci ratio: 1.067091e-01	ci left: 2.487593e-02	ci right 2.769943e-02	k: 1313	n:50000
Cons ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
KS ci ratio: 1.233092e-02	ci left: 6.648556e-01	ci right 6.731248e-01	k: 33450	n:50000
EXT2   50000 perm   11 sec   (4405 perm/sec)   p_kst 6.690000e-01   p_cons 1.760000e-03   p_joint 2.626000e-02

Joint ci ratio: 1.154567e-01	ci left: 1.776062e-02	ci right 1.995293e-02	k: 1130	n:60000
Cons ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
KS ci ratio: 1.120493e-02	ci left: 6.672574e-01	ci right 6.747927e-01	k: 40262	n:60000
EXT2   60000 perm   14 sec   (4298 perm/sec)   p_kst 6.710333e-01   p_cons 1.716667e-03   p_joint 1.883333e-02

Joint ci ratio: 9.225656e-02	ci left: 2.398168e-02	ci right 2.631505e-02	k: 1759	n:70000
Cons ci ratio: 3.545882e-01	ci left: 1.434524e-03	ci right 2.065074e-03	k: 121	n:70000
KS ci ratio: 1.039302e-02	ci left: 6.667174e-01	ci right 6.736971e-01	k: 46915	n:70000
EXT2   70000 perm   17 sec   (4210 perm/sec)   p_kst 6.702143e-01   p_cons 1.728571e-03   p_joint 2.512857e-02

Joint ci ratio: 9.559155e-02	ci left: 1.960247e-02	ci right 2.158251e-02	k: 1646	n:80000
Cons ci ratio: 3.252411e-01	ci left: 1.518222e-03	ci right 2.118831e-03	k: 144	n:80000
KS ci ratio: 9.724577e-03	ci left: 6.668170e-01	ci right 6.733457e-01	k: 53607	n:80000
EXT2   80000 perm   19 sec   (4131 perm/sec)   p_kst 6.700875e-01   p_cons 1.800000e-03   p_joint 2.057500e-02

Joint ci ratio: 8.410750e-02	ci left: 2.257455e-02	ci right 2.456743e-02	k: 2120	n:90000
Cons ci ratio: 3.021505e-01	ci left: 1.585003e-03	ci right 2.158978e-03	k: 167	n:90000
KS ci ratio: 9.295637e-03	ci left: 6.608699e-01	ci right 6.670529e-01	k: 59757	n:90000
EXT2   90000 perm   22 sec   (4050 perm/sec)   p_kst 6.639667e-01   p_cons 1.855556e-03   p_joint 2.355556e-02

Joint ci ratio: 8.102650e-02	ci left: 2.194253e-02	ci right 2.380529e-02	k: 2286	n:100000
Cons ci ratio: 2.887188e-01	ci left: 1.574649e-03	ci right 2.114902e-03	k: 183	n:100000
KS ci ratio: 8.815988e-03	ci left: 6.611630e-01	ci right 6.670275e-01	k: 66410	n:100000
EXT2   100000 perm   25 sec   (3975 perm/sec)   p_kst 6.641000e-01   p_cons 1.830000e-03   p_joint 2.286000e-02

Joint ci ratio: 8.256219e-02	ci left: 1.925205e-02	ci right 2.091884e-02	k: 2208	n:110000
Cons ci ratio: 2.776287e-01	ci left: 1.558180e-03	ci right 2.068661e-03	k: 198	n:110000
KS ci ratio: 8.400926e-03	ci left: 6.615551e-01	ci right 6.671453e-01	k: 73079	n:110000
EXT2   110000 perm   28 sec   (3905 perm/sec)   p_kst 6.643545e-01   p_cons 1.800000e-03   p_joint 2.007273e-02

Joint ci ratio: 8.324910e-02	ci left: 1.738587e-02	ci right 1.890421e-02	k: 2176	n:120000
Cons ci ratio: 2.664810e-01	ci left: 1.560340e-03	ci right 2.047576e-03	k: 215	n:120000
KS ci ratio: 8.049974e-03	ci left: 6.613027e-01	ci right 6.666560e-01	k: 79678	n:120000
EXT2   120000 perm   31 sec   (3839 perm/sec)   p_kst 6.639833e-01   p_cons 1.791667e-03   p_joint 1.813333e-02

Joint ci ratio: 6.855893e-02	ci left: 2.368909e-02	ci right 2.537837e-02	k: 3188	n:130000
Cons ci ratio: 2.565765e-01	ci left: 1.562513e-03	ci right 2.029391e-03	k: 232	n:130000
KS ci ratio: 7.735880e-03	ci left: 6.613093e-01	ci right 6.664526e-01	k: 86305	n:130000
EXT2   130000 perm   34 sec   (3777 perm/sec)   p_kst 6.638846e-01   p_cons 1.784615e-03   p_joint 2.452308e-02

Joint ci ratio: 6.530210e-02	ci left: 2.427281e-02	ci right 2.591837e-02	k: 3512	n:140000
Cons ci ratio: 2.457386e-01	ci left: 1.591470e-03	ci right 2.043849e-03	k: 253	n:140000
KS ci ratio: 7.458522e-03	ci left: 6.611611e-01	ci right 6.661179e-01	k: 92910	n:140000
EXT2   140000 perm   38 sec   (3708 perm/sec)   p_kst 6.636429e-01   p_cons 1.807143e-03   p_joint 2.508571e-02

Joint ci ratio: 6.178619e-02	ci left: 2.532528e-02	ci right 2.694644e-02	k: 3919	n:150000
Cons ci ratio: 2.396857e-01	ci left: 1.566766e-03	ci right 1.999523e-03	k: 266	n:150000
KS ci ratio: 7.207818e-03	ci left: 6.611090e-01	ci right 6.658980e-01	k: 99526	n:150000
EXT2   150000 perm   41 sec   (3654 perm/sec)   p_kst 6.635067e-01   p_cons 1.773333e-03   p_joint 2.612667e-02

Joint ci ratio: 5.984873e-02	ci left: 2.533042e-02	ci right 2.689931e-02	k: 4177	n:160000
Cons ci ratio: 2.361809e-01	ci left: 1.515858e-03	ci right 1.927535e-03	k: 274	n:160000
KS ci ratio: 6.976702e-03	ci left: 6.613289e-01	ci right 6.659652e-01	k: 106184	n:160000
EXT2   160000 perm   44 sec   (3605 perm/sec)   p_kst 6.636500e-01   p_cons 1.712500e-03   p_joint 2.610625e-02

Joint ci ratio: 5.300952e-02	ci left: 3.033796e-02	ci right 3.199573e-02	k: 5297	n:170000
Cons ci ratio: 2.299932e-01	ci left: 1.509772e-03	ci right 1.907530e-03	k: 289	n:170000
KS ci ratio: 6.761932e-03	ci left: 6.618256e-01	ci right 6.663218e-01	k: 112893	n:170000
EXT2   170000 perm   48 sec   (3558 perm/sec)   p_kst 6.640765e-01   p_cons 1.700000e-03   p_joint 3.115882e-02

Joint ci ratio: 5.604299e-02	ci left: 2.571902e-02	ci right 2.720740e-02	k: 4762	n:180000
Cons ci ratio: 2.224486e-01	ci left: 1.530714e-03	ci right 1.918950e-03	k: 309	n:180000
KS ci ratio: 6.569108e-03	ci left: 6.620462e-01	ci right 6.664151e-01	k: 119562	n:180000
EXT2   180000 perm   51 sec   (3514 perm/sec)   p_kst 6.642333e-01   p_cons 1.716667e-03   p_joint 2.645556e-02

Joint ci ratio: 5.519216e-02	ci left: 2.514886e-02	ci right 2.658144e-02	k: 4913	n:190000
Cons ci ratio: 2.156009e-01	ci left: 1.549642e-03	ci right 1.928978e-03	k: 329	n:190000
KS ci ratio: 6.397021e-03	ci left: 6.618868e-01	ci right 6.661397e-01	k: 126163	n:190000
EXT2   190000 perm   55 sec   (3467 perm/sec)   p_kst 6.640158e-01   p_cons 1.731579e-03   p_joint 2.585789e-02

Joint ci ratio: 5.442236e-02	ci left: 2.459643e-02	ci right 2.597738e-02	k: 5056	n:200000
Cons ci ratio: 2.108631e-01	ci left: 1.543154e-03	ci right 1.911529e-03	k: 344	n:200000
KS ci ratio: 6.236734e-03	ci left: 6.618199e-01	ci right 6.659654e-01	k: 132779	n:200000
EXT2   200000 perm   58 sec   (3424 perm/sec)   p_kst 6.638950e-01   p_cons 1.720000e-03   p_joint 2.528000e-02

Joint ci ratio: 5.705922e-02	ci left: 2.135338e-02	ci right 2.261224e-02	k: 4615	n:210000
Cons ci ratio: 2.058525e-01	ci left: 1.546400e-03	ci right 1.905673e-03	k: 361	n:210000
KS ci ratio: 6.088050e-03	ci left: 6.617510e-01	ci right 6.657968e-01	k: 139393	n:210000
EXT2   210000 perm   62 sec   (3381 perm/sec)   p_kst 6.637762e-01   p_cons 1.719048e-03   p_joint 2.197619e-02

Joint ci ratio: 5.638738e-02	ci left: 2.088898e-02	ci right 2.210549e-02	k: 4728	n:220000
Cons ci ratio: 2.014493e-01	ci left: 1.545128e-03	ci right 1.895483e-03	k: 377	n:220000
KS ci ratio: 5.952061e-03	ci left: 6.614984e-01	ci right 6.654519e-01	k: 145965	n:220000
EXT2   220000 perm   66 sec   (3341 perm/sec)   p_kst 6.634773e-01   p_cons 1.713636e-03   p_joint 2.149091e-02

Joint ci ratio: 5.815861e-02	ci left: 1.880592e-02	ci right 1.993667e-02	k: 4454	n:230000
Cons ci ratio: 1.973171e-01	ci left: 1.544041e-03	ci right 1.886104e-03	k: 393	n:230000
KS ci ratio: 5.820595e-03	ci left: 6.615908e-01	ci right 6.654572e-01	k: 152611	n:230000
EXT2   230000 perm   70 sec   (3300 perm/sec)   p_kst 6.635261e-01   p_cons 1.708696e-03   p_joint 1.936522e-02

Joint ci ratio: 5.175889e-02	ci left: 2.273717e-02	ci right 2.394938e-02	k: 5601	n:240000
Cons ci ratio: 1.922584e-01	ci left: 1.562940e-03	ci right 1.899276e-03	k: 414	n:240000
KS ci ratio: 5.696303e-03	ci left: 6.617683e-01	ci right 6.655528e-01	k: 159279	n:240000
EXT2   240000 perm   74 sec   (3259 perm/sec)   p_kst 6.636625e-01   p_cons 1.725000e-03   p_joint 2.333750e-02

Joint ci ratio: 5.087593e-02	ci left: 2.260553e-02	ci right 2.378956e-02	k: 5798	n:250000
Cons ci ratio: 1.893177e-01	ci left: 1.549938e-03	ci right 1.877787e-03	k: 427	n:250000
KS ci ratio: 5.582496e-03	ci left: 6.617040e-01	ci right 6.654122e-01	k: 165890	n:250000
EXT2   250000 perm   78 sec   (3220 perm/sec)   p_kst 6.635600e-01   p_cons 1.708000e-03   p_joint 2.319200e-02

Joint ci ratio: 5.203954e-02	ci left: 2.080160e-02	ci right 2.191680e-02	k: 5552	n:260000
Cons ci ratio: 1.867201e-01	ci left: 1.534305e-03	ci right 1.853890e-03	k: 439	n:260000
KS ci ratio: 5.480342e-03	ci left: 6.612294e-01	ci right 6.648669e-01	k: 172393	n:260000
EXT2   260000 perm   82 sec   (3182 perm/sec)   p_kst 6.630500e-01   p_cons 1.688462e-03   p_joint 2.135385e-02

Joint ci ratio: 4.815430e-02	ci left: 2.337839e-02	ci right 2.453557e-02	k: 6467	n:270000
Cons ci ratio: 1.810446e-01	ci left: 1.576413e-03	ci right 1.893695e-03	k: 467	n:270000
KS ci ratio: 5.380015e-03	ci left: 6.610874e-01	ci right 6.646573e-01	k: 178976	n:270000
EXT2   270000 perm   86 sec   (3144 perm/sec)   p_kst 6.628741e-01   p_cons 1.729630e-03   p_joint 2.395185e-02

Joint ci ratio: 4.725252e-02	ci left: 2.342213e-02	ci right 2.455918e-02	k: 6716	n:280000
Cons ci ratio: 1.765716e-01	ci left: 1.601993e-03	ci right 1.915607e-03	k: 491	n:280000
KS ci ratio: 5.284791e-03	ci left: 6.609739e-01	ci right 6.644798e-01	k: 185564	n:280000
EXT2   280000 perm   90 sec   (3108 perm/sec)   p_kst 6.627286e-01   p_cons 1.753571e-03   p_joint 2.398571e-02

Joint ci ratio: 4.756330e-02	ci left: 2.234158e-02	ci right 2.343350e-02	k: 6636	n:290000
Cons ci ratio: 1.742855e-01	ci left: 1.589610e-03	ci right 1.896346e-03	k: 504	n:290000
KS ci ratio: 5.196692e-03	ci left: 6.606755e-01	ci right 6.641212e-01	k: 192096	n:290000
EXT2   290000 perm   94 sec   (3073 perm/sec)   p_kst 6.624000e-01   p_cons 1.737931e-03   p_joint 2.288276e-02

Joint ci ratio: 4.709437e-02	ci left: 2.204146e-02	ci right 2.310779e-02	k: 6771	n:300000
Cons ci ratio: 1.707699e-01	ci left: 1.603602e-03	ci right 1.906153e-03	k: 525	n:300000
KS ci ratio: 5.202526e-03	ci left: 6.525649e-01	ci right 6.559721e-01	k: 196281	n:300000
EXT2   300000 perm   99 sec   (3038 perm/sec)   p_kst 6.542700e-01   p_cons 1.750000e-03   p_joint 2.257000e-02

Joint ci ratio: 4.616593e-02	ci left: 2.220405e-02	ci right 2.325651e-02	k: 7045	n:310000
Cons ci ratio: 1.683866e-01	ci left: 1.598206e-03	ci right 1.895104e-03	k: 540	n:310000
KS ci ratio: 5.116894e-03	ci left: 6.526841e-01	ci right 6.560356e-01	k: 202852	n:310000
EXT2   310000 perm   103 sec   (3004 perm/sec)   p_kst 6.543613e-01   p_cons 1.741935e-03   p_joint 2.272581e-02

Joint ci ratio: 4.626670e-02	ci left: 2.143275e-02	ci right 2.245093e-02	k: 7020	n:320000
Cons ci ratio: 1.659509e-01	ci left: 1.596170e-03	ci right 1.887972e-03	k: 556	n:320000
KS ci ratio: 5.037409e-03	ci left: 6.526117e-01	ci right 6.559105e-01	k: 209364	n:320000
EXT2   320000 perm   108 sec   (2970 perm/sec)   p_kst 6.542625e-01   p_cons 1.737500e-03   p_joint 2.193750e-02

Joint ci ratio: 4.554874e-02	ci left: 2.145128e-02	ci right 2.245411e-02	k: 7243	n:330000
Cons ci ratio: 1.627664e-01	ci left: 1.611727e-03	ci right 1.900166e-03	k: 578	n:330000
KS ci ratio: 4.960651e-03	ci left: 6.526229e-01	ci right 6.558714e-01	k: 215902	n:330000
EXT2   330000 perm   112 sec   (2940 perm/sec)   p_kst 6.542485e-01   p_cons 1.751515e-03   p_joint 2.194848e-02

Joint ci ratio: 4.584587e-02	ci left: 2.056719e-02	ci right 2.153512e-02	k: 7156	n:340000
Cons ci ratio: 1.611068e-01	ci left: 1.598186e-03	ci right 1.881003e-03	k: 590	n:340000
KS ci ratio: 4.886759e-03	ci left: 6.526839e-01	ci right 6.558841e-01	k: 222457	n:340000
EXT2   340000 perm   117 sec   (2909 perm/sec)   p_kst 6.542853e-01   p_cons 1.735294e-03   p_joint 2.104706e-02

Joint ci ratio: 4.510028e-02	ci left: 2.065184e-02	ci right 2.160754e-02	k: 7394	n:350000
Cons ci ratio: 1.588386e-01	ci left: 1.599151e-03	ci right 1.877774e-03	k: 607	n:350000
KS ci ratio: 4.815556e-03	ci left: 6.527903e-01	ci right 6.559443e-01	k: 229029	n:350000
EXT2   350000 perm   122 sec   (2879 perm/sec)   p_kst 6.543686e-01   p_cons 1.734286e-03   p_joint 2.112571e-02

Joint ci ratio: 4.418629e-02	ci left: 2.092150e-02	ci right 2.186956e-02	k: 7701	n:360000
Cons ci ratio: 1.572951e-01	ci left: 1.586744e-03	ci right 1.860266e-03	k: 619	n:360000
KS ci ratio: 4.748135e-03	ci left: 6.528189e-01	ci right 6.559286e-01	k: 235575	n:360000
EXT2   360000 perm   126 sec   (2849 perm/sec)   p_kst 6.543750e-01   p_cons 1.719444e-03   p_joint 2.139167e-02

Joint ci ratio: 4.201697e-02	ci left: 2.250065e-02	ci right 2.346900e-02	k: 8503	n:370000
Cons ci ratio: 1.548173e-01	ci left: 1.595803e-03	ci right 1.866151e-03	k: 639	n:370000
KS ci ratio: 4.681594e-03	ci left: 6.530274e-01	ci right 6.560945e-01	k: 242188	n:370000
EXT2   370000 perm   131 sec   (2819 perm/sec)   p_kst 6.545622e-01   p_cons 1.727027e-03   p_joint 2.298108e-02

Joint ci ratio: 3.767690e-02	ci left: 2.717528e-02	ci right 2.822141e-02	k: 10524	n:380000
Cons ci ratio: 1.522222e-01	ci left: 1.609480e-03	ci right 1.877157e-03	k: 661	n:380000
KS ci ratio: 4.620138e-03	ci left: 6.529935e-01	ci right 6.560200e-01	k: 248713	n:380000
EXT2   380000 perm   136 sec   (2787 perm/sec)   p_kst 6.545079e-01   p_cons 1.739474e-03   p_joint 2.769474e-02

Joint ci ratio: 3.728843e-02	ci left: 2.704234e-02	ci right 2.807239e-02	k: 10746	n:390000
Cons ci ratio: 1.506383e-01	ci left: 1.602748e-03	ci right 1.866282e-03	k: 675	n:390000
KS ci ratio: 4.557886e-03	ci left: 6.532746e-01	ci right 6.562615e-01	k: 255360	n:390000
EXT2   390000 perm   141 sec   (2759 perm/sec)   p_kst 6.547692e-01   p_cons 1.730769e-03   p_joint 2.755385e-02

Joint ci ratio: 3.667178e-02	ci left: 2.726297e-02	ci right 2.828389e-02	k: 11108	n:400000
Cons ci ratio: 1.480322e-01	ci left: 1.620438e-03	ci right 1.881864e-03	k: 699	n:400000
KS ci ratio: 4.501217e-03	ci left: 6.532267e-01	ci right 6.561761e-01	k: 261881	n:400000
EXT2   400000 perm   146 sec   (2732 perm/sec)   p_kst 6.547025e-01   p_cons 1.747500e-03   p_joint 2.777000e-02

Joint ci ratio: 3.677653e-02	ci left: 2.646732e-02	ci right 2.746133e-02	k: 11054	n:410000
Cons ci ratio: 1.460629e-01	ci left: 1.625552e-03	ci right 1.884010e-03	k: 718	n:410000
KS ci ratio: 4.447329e-03	ci left: 6.531080e-01	ci right 6.560215e-01	k: 268372	n:410000
EXT2   410000 perm   152 sec   (2705 perm/sec)   p_kst 6.545659e-01   p_cons 1.751220e-03   p_joint 2.696098e-02

Joint ci ratio: 3.401213e-02	ci left: 3.013548e-02	ci right 3.118053e-02	k: 12875	n:420000
Cons ci ratio: 1.444646e-01	ci left: 1.623559e-03	ci right 1.878632e-03	k: 734	n:420000
KS ci ratio: 4.395446e-03	ci left: 6.529833e-01	ci right 6.558621e-01	k: 274858	n:420000
EXT2   420000 perm   157 sec   (2679 perm/sec)   p_kst 6.544238e-01   p_cons 1.747619e-03   p_joint 3.065476e-02

Joint ci ratio: 3.368763e-02	ci left: 3.001341e-02	ci right 3.104410e-02	k: 13126	n:430000
Cons ci ratio: 1.428225e-01	ci left: 1.623916e-03	ci right 1.875897e-03	k: 751	n:430000
KS ci ratio: 4.343192e-03	ci left: 6.530881e-01	ci right 6.559331e-01	k: 281440	n:430000
EXT2   430000 perm   162 sec   (2654 perm/sec)   p_kst 6.545116e-01   p_cons 1.746512e-03   p_joint 3.052558e-02

Joint ci ratio: 3.349509e-02	ci left: 2.968276e-02	ci right 3.069616e-02	k: 13282	n:440000
Cons ci ratio: 1.411432e-01	ci left: 1.626465e-03	ci right 1.875625e-03	k: 769	n:440000
KS ci ratio: 4.293643e-03	ci left: 6.530950e-01	ci right 6.559075e-01	k: 287981	n:440000
EXT2   440000 perm   167 sec   (2628 perm/sec)   p_kst 6.545023e-01   p_cons 1.747727e-03   p_joint 3.018636e-02

Joint ci ratio: 3.220678e-02	ci left: 3.135759e-02	ci right 3.238623e-02	k: 14341	n:450000
Cons ci ratio: 1.396105e-01	ci left: 1.626772e-03	ci right 1.873048e-03	k: 786	n:450000
KS ci ratio: 4.244083e-03	ci left: 6.532798e-01	ci right 6.560604e-01	k: 294602	n:450000
EXT2   450000 perm   173 sec   (2603 perm/sec)   p_kst 6.546711e-01   p_cons 1.746667e-03   p_joint 3.186889e-02

Joint ci ratio: 3.252147e-02	ci left: 3.011925e-02	ci right 3.111711e-02	k: 14083	n:460000
Cons ci ratio: 1.383856e-01	ci left: 1.620783e-03	ci right 1.863822e-03	k: 800	n:460000
KS ci ratio: 4.198762e-03	ci left: 6.531803e-01	ci right 6.559308e-01	k: 301096	n:460000
EXT2   460000 perm   178 sec   (2578 perm/sec)   p_kst 6.545565e-01   p_cons 1.739130e-03   p_joint 3.061522e-02

Joint ci ratio: 3.147550e-02	ci left: 3.144376e-02	ci right 3.245138e-02	k: 15014	n:470000
Cons ci ratio: 1.368563e-01	ci left: 1.623278e-03	ci right 1.863782e-03	k: 818	n:470000
KS ci ratio: 4.152908e-03	ci left: 6.532982e-01	ci right 6.560190e-01	k: 307690	n:470000
EXT2   470000 perm   184 sec   (2554 perm/sec)   p_kst 6.546596e-01   p_cons 1.740426e-03   p_joint 3.194468e-02

Joint ci ratio: 2.949633e-02	ci left: 3.496588e-02	ci right 3.601474e-02	k: 17034	n:480000
Cons ci ratio: 1.352150e-01	ci left: 1.629709e-03	ci right 1.868037e-03	k: 838	n:480000
KS ci ratio: 4.109773e-03	ci left: 6.532737e-01	ci right 6.559661e-01	k: 314218	n:480000
EXT2   480000 perm   190 sec   (2529 perm/sec)   p_kst 6.546208e-01   p_cons 1.745833e-03   p_joint 3.548750e-02

Joint ci ratio: 2.888092e-02	ci left: 3.571115e-02	ci right 3.675965e-02	k: 17754	n:490000
Cons ci ratio: 1.340226e-01	ci left: 1.626030e-03	ci right 1.861556e-03	k: 853	n:490000
KS ci ratio: 4.067184e-03	ci left: 6.533361e-01	ci right 6.560008e-01	k: 320788	n:490000
EXT2   490000 perm   196 sec   (2506 perm/sec)   p_kst 6.546694e-01   p_cons 1.740816e-03   p_joint 3.623265e-02

Joint ci ratio: 2.954678e-02	ci left: 3.350334e-02	ci right 3.451007e-02	k: 17002	n:500000
Cons ci ratio: 1.331685e-01	ci left: 1.614774e-03	ci right 1.847061e-03	k: 864	n:500000
KS ci ratio: 4.027370e-03	ci left: 6.532301e-01	ci right 6.558681e-01	k: 327275	n:500000
EXT2   500000 perm   201 sec   (2483 perm/sec)   p_kst 6.545500e-01   p_cons 1.728000e-03   p_joint 3.400400e-02

Joint ci ratio: 3.009679e-02	ci left: 3.170746e-02	ci right 3.267826e-02	k: 16417	n:510000
Cons ci ratio: 1.321795e-01	ci left: 1.607755e-03	ci right 1.837180e-03	k: 877	n:510000
KS ci ratio: 3.987163e-03	ci left: 6.533030e-01	ci right 6.559149e-01	k: 333851	n:510000
EXT2   510000 perm   207 sec   (2461 perm/sec)   p_kst 6.546098e-01   p_cons 1.719608e-03   p_joint 3.219020e-02

Joint ci ratio: 3.007616e-02	ci left: 3.115864e-02	ci right 3.211197e-02	k: 16449	n:520000
Cons ci ratio: 1.309915e-01	ci left: 1.606593e-03	ci right 1.833632e-03	k: 893	n:520000
KS ci ratio: 3.948456e-03	ci left: 6.533366e-01	ci right 6.559232e-01	k: 340408	n:520000
EXT2   520000 perm   213 sec   (2438 perm/sec)   p_kst 6.546308e-01   p_cons 1.717308e-03   p_joint 3.163269e-02

Joint ci ratio: 2.999054e-02	ci left: 3.075978e-02	ci right 3.169818e-02	k: 16550	n:530000
Cons ci ratio: 1.302659e-01	ci left: 1.594531e-03	ci right 1.818520e-03	k: 903	n:530000
KS ci ratio: 3.912340e-03	ci left: 6.531972e-01	ci right 6.557596e-01	k: 346874	n:530000
EXT2   530000 perm   219 sec   (2416 perm/sec)   p_kst 6.544792e-01   p_cons 1.703774e-03   p_joint 3.122642e-02

Joint ci ratio: 3.004352e-02	ci left: 3.010362e-02	ci right 3.102365e-02	k: 16503	n:540000
Cons ci ratio: 1.291283e-01	ci left: 1.593671e-03	ci right 1.815434e-03	k: 919	n:540000
KS ci ratio: 3.876085e-03	ci left: 6.531929e-01	ci right 6.557314e-01	k: 353410	n:540000
EXT2   540000 perm   225 sec   (2395 perm/sec)   p_kst 6.544630e-01   p_cons 1.701852e-03   p_joint 3.056111e-02

Joint ci ratio: 2.926180e-02	ci left: 3.113563e-02	ci right 3.206204e-02	k: 17378	n:550000
Cons ci ratio: 1.275432e-01	ci left: 1.605171e-03	ci right 1.825585e-03	k: 942	n:550000
KS ci ratio: 3.839862e-03	ci left: 6.533016e-01	ci right 6.558168e-01	k: 360008	n:550000
EXT2   550000 perm   232 sec   (2375 perm/sec)   p_kst 6.545600e-01   p_cons 1.712727e-03   p_joint 3.159636e-02

Joint ci ratio: 2.853795e-02	ci left: 3.212931e-02	ci right 3.306125e-02	k: 18252	n:560000
Cons ci ratio: 1.259497e-01	ci left: 1.618006e-03	ci right 1.837200e-03	k: 966	n:560000
KS ci ratio: 3.807116e-03	ci left: 6.531117e-01	ci right 6.556046e-01	k: 366441	n:560000
EXT2   560000 perm   238 sec   (2354 perm/sec)   p_kst 6.543589e-01   p_cons 1.725000e-03   p_joint 3.259286e-02

Joint ci ratio: 3.137069e-02	ci left: 2.624473e-02	ci right 2.708289e-02	k: 15197	n:570000
Cons ci ratio: 1.243517e-01	ci left: 1.632108e-03	ci right 1.850200e-03	k: 991	n:570000
KS ci ratio: 3.772000e-03	ci left: 6.533113e-01	ci right 6.557819e-01	k: 373092	n:570000
EXT2   570000 perm   244 sec   (2335 perm/sec)   p_kst 6.545474e-01   p_cons 1.738596e-03   p_joint 2.666140e-02

Joint ci ratio: 3.113388e-02	ci left: 2.619081e-02	ci right 2.702082e-02	k: 15430	n:580000
Cons ci ratio: 1.230556e-01	ci left: 1.639055e-03	ci right 1.855626e-03	k: 1012	n:580000
KS ci ratio: 3.739220e-03	ci left: 6.533367e-01	ci right 6.557859e-01	k: 379646	n:580000
EXT2   580000 perm   251 sec   (2315 perm/sec)   p_kst 6.545621e-01   p_cons 1.744828e-03   p_joint 2.660345e-02

Joint ci ratio: 3.093787e-02	ci left: 2.607986e-02	ci right 2.690106e-02	k: 15628	n:590000
Cons ci ratio: 1.219766e-01	ci left: 1.640848e-03	ci right 1.855618e-03	k: 1030	n:590000
KS ci ratio: 3.708447e-03	ci left: 6.532188e-01	ci right 6.556474e-01	k: 386116	n:590000
EXT2   590000 perm   257 sec   (2295 perm/sec)   p_kst 6.544339e-01   p_cons 1.745763e-03   p_joint 2.648814e-02

Joint ci ratio: 3.064027e-02	ci left: 2.614798e-02	ci right 2.696327e-02	k: 15932	n:600000
Cons ci ratio: 1.209255e-01	ci left: 1.642589e-03	ci right 1.855601e-03	k: 1048	n:600000
KS ci ratio: 3.678015e-03	ci left: 6.531551e-01	ci right 6.555634e-01	k: 392616	n:600000
EXT2   600000 perm   264 sec   (2275 perm/sec)   p_kst 6.543600e-01   p_cons 1.746667e-03   p_joint 2.655333e-02

Joint ci ratio: 3.015798e-02	ci left: 2.654424e-02	ci right 2.735863e-02	k: 16439	n:610000
Cons ci ratio: 1.195649e-01	ci left: 1.653823e-03	ci right 1.865708e-03	k: 1072	n:610000
KS ci ratio: 3.647658e-03	ci left: 6.531755e-01	ci right 6.555640e-01	k: 399166	n:610000
EXT2   610000 perm   270 sec   (2255 perm/sec)   p_kst 6.543705e-01   p_cons 1.757377e-03   p_joint 2.694918e-02

Joint ci ratio: 2.991425e-02	ci left: 2.654672e-02	ci right 2.735449e-02	k: 16708	n:620000
Cons ci ratio: 1.183572e-01	ci left: 1.661576e-03	ci right 1.872155e-03	k: 1094	n:620000
KS ci ratio: 3.617551e-03	ci left: 6.532567e-01	ci right 6.556257e-01	k: 405754	n:620000
EXT2   620000 perm   277 sec   (2236 perm/sec)   p_kst 6.544419e-01   p_cons 1.764516e-03   p_joint 2.694839e-02

Joint ci ratio: 2.969161e-02	ci left: 2.652235e-02	ci right 2.732327e-02	k: 16960	n:630000
Cons ci ratio: 1.170281e-01	ci left: 1.673717e-03	ci right 1.883288e-03	k: 1119	n:630000
KS ci ratio: 3.588957e-03	ci left: 6.532369e-01	ci right 6.555871e-01	k: 412280	n:630000
EXT2   630000 perm   284 sec   (2218 perm/sec)   p_kst 6.544127e-01   p_cons 1.776190e-03   p_joint 2.692063e-02

Joint ci ratio: 2.950648e-02	ci left: 2.644138e-02	ci right 2.723479e-02	k: 17175	n:640000
Cons ci ratio: 1.160478e-01	ci left: 1.676388e-03	ci right 1.884414e-03	k: 1138	n:640000
KS ci ratio: 3.561326e-03	ci left: 6.531802e-01	ci right 6.555121e-01	k: 418782	n:640000
EXT2   640000 perm   291 sec   (2201 perm/sec)   p_kst 6.543469e-01   p_cons 1.778125e-03   p_joint 2.683594e-02

Joint ci ratio: 2.927292e-02	ci left: 2.645456e-02	ci right 2.724198e-02	k: 17450	n:650000
Cons ci ratio: 1.150918e-01	ci left: 1.678983e-03	ci right 1.885498e-03	k: 1157	n:650000
KS ci ratio: 3.534600e-03	ci left: 6.530900e-01	ci right 6.554040e-01	k: 425261	n:650000
EXT2   650000 perm   298 sec   (2183 perm/sec)   p_kst 6.542477e-01   p_cons 1.780000e-03   p_joint 2.684615e-02

Joint ci ratio: 2.904734e-02	ci left: 2.646285e-02	ci right 2.724434e-02	k: 17722	n:660000
Cons ci ratio: 1.138204e-01	ci left: 1.691811e-03	ci right 1.897450e-03	k: 1183	n:660000
KS ci ratio: 3.507409e-03	ci left: 6.531390e-01	ci right 6.554354e-01	k: 431830	n:660000
EXT2   660000 perm   305 sec   (2166 perm/sec)   p_kst 6.542879e-01   p_cons 1.792424e-03   p_joint 2.685152e-02

Joint ci ratio: 2.719191e-02	ci left: 2.967585e-02	ci right 3.049538e-02	k: 20156	n:670000
Cons ci ratio: 1.127771e-01	ci left: 1.698465e-03	ci right 1.902896e-03	k: 1205	n:670000
KS ci ratio: 3.481215e-03	ci left: 6.531374e-01	ci right 6.554165e-01	k: 438366	n:670000
EXT2   670000 perm   312 sec   (2149 perm/sec)   p_kst 6.542776e-01   p_cons 1.798507e-03   p_joint 3.008358e-02

Joint ci ratio: 2.714127e-02	ci left: 2.935914e-02	ci right 3.016840e-02	k: 20238	n:680000
Cons ci ratio: 1.119448e-01	ci left: 1.699215e-03	ci right 1.902126e-03	k: 1223	n:680000
KS ci ratio: 3.455914e-03	ci left: 6.530946e-01	ci right 6.553570e-01	k: 444874	n:680000
EXT2   680000 perm   319 sec   (2132 perm/sec)   p_kst 6.542265e-01   p_cons 1.798529e-03   p_joint 2.976176e-02

Joint ci ratio: 2.692741e-02	ci left: 2.939717e-02	ci right 3.020099e-02	k: 20560	n:690000
Cons ci ratio: 1.110858e-01	ci left: 1.701357e-03	ci right 1.902863e-03	k: 1242	n:690000
KS ci ratio: 3.430046e-03	ci left: 6.531997e-01	ci right 6.554454e-01	k: 451483	n:690000
EXT2   690000 perm   326 sec   (2116 perm/sec)   p_kst 6.543232e-01   p_cons 1.800000e-03   p_joint 2.979710e-02

Joint ci ratio: 2.672843e-02	ci left: 2.941284e-02	ci right 3.021106e-02	k: 20867	n:700000
Cons ci ratio: 1.102464e-01	ci left: 1.703443e-03	ci right 1.903573e-03	k: 1261	n:700000
KS ci ratio: 3.405256e-03	ci left: 6.532346e-01	ci right 6.554642e-01	k: 458045	n:700000
EXT2   700000 perm   333 sec   (2099 perm/sec)   p_kst 6.543500e-01   p_cons 1.801429e-03   p_joint 2.981000e-02

Joint ci ratio: 2.636550e-02	ci left: 2.979614e-02	ci right 3.059361e-02	k: 21437	n:710000
Cons ci ratio: 1.093829e-01	ci left: 1.706846e-03	ci right 1.905704e-03	k: 1281	n:710000
KS ci ratio: 3.381532e-03	ci left: 6.531966e-01	ci right 6.554106e-01	k: 464556	n:710000
EXT2   710000 perm   341 sec   (2083 perm/sec)   p_kst 6.543042e-01   p_cons 1.804225e-03   p_joint 3.019296e-02

Joint ci ratio: 2.618049e-02	ci left: 2.980176e-02	ci right 3.059370e-02	k: 21741	n:720000
Cons ci ratio: 1.089171e-01	ci left: 1.698000e-03	ci right 1.894931e-03	k: 1292	n:720000
KS ci ratio: 3.358535e-03	ci left: 6.531279e-01	ci right 6.553265e-01	k: 471044	n:720000
EXT2   720000 perm   348 sec   (2067 perm/sec)   p_kst 6.542278e-01   p_cons 1.794444e-03   p_joint 3.019583e-02

Joint ci ratio: 2.615942e-02	ci left: 2.945196e-02	ci right 3.023397e-02	k: 21784	n:730000
Cons ci ratio: 1.080431e-01	ci left: 1.702727e-03	ci right 1.898521e-03	k: 1313	n:730000
KS ci ratio: 3.335495e-03	ci left: 6.531296e-01	ci right 6.553130e-01	k: 477582	n:730000
EXT2   730000 perm   356 sec   (2052 perm/sec)   p_kst 6.542219e-01   p_cons 1.798630e-03   p_joint 2.984110e-02

Joint ci ratio: 2.581590e-02	ci left: 2.982601e-02	ci right 3.060740e-02	k: 22359	n:740000
Cons ci ratio: 1.074318e-01	ci left: 1.699441e-03	ci right 1.893681e-03	k: 1328	n:740000
KS ci ratio: 3.313458e-03	ci left: 6.530582e-01	ci right 6.552270e-01	k: 484066	n:740000
EXT2   740000 perm   363 sec   (2037 perm/sec)   p_kst 6.541432e-01   p_cons 1.794595e-03   p_joint 3.021486e-02

Joint ci ratio: 2.579571e-02	ci left: 2.948523e-02	ci right 3.025707e-02	k: 22402	n:750000
Cons ci ratio: 1.067911e-01	ci left: 1.697544e-03	ci right 1.890337e-03	k: 1344	n:750000
KS ci ratio: 3.290571e-03	ci left: 6.531650e-01	ci right 6.553191e-01	k: 490682	n:750000
EXT2   750000 perm   371 sec   (2022 perm/sec)   p_kst 6.542427e-01   p_cons 1.792000e-03   p_joint 2.986933e-02

Joint ci ratio: 2.563284e-02	ci left: 2.947116e-02	ci right 3.023769e-02	k: 22688	n:760000
Cons ci ratio: 1.062007e-01	ci left: 1.694418e-03	ci right 1.885727e-03	k: 1359	n:760000
KS ci ratio: 3.267990e-03	ci left: 6.532914e-01	ci right 6.554311e-01	k: 497315	n:760000
EXT2   760000 perm   379 sec   (2007 perm/sec)   p_kst 6.543618e-01   p_cons 1.788158e-03   p_joint 2.985263e-02

Joint ci ratio: 2.545645e-02	ci left: 2.949490e-02	ci right 3.025669e-02	k: 23003	n:770000
Cons ci ratio: 1.055816e-01	ci left: 1.692642e-03	ci right 1.882566e-03	k: 1375	n:770000
KS ci ratio: 3.246137e-03	ci left: 6.533768e-01	ci right 6.555025e-01	k: 503919	n:770000
EXT2   770000 perm   387 sec   (1992 perm/sec)   p_kst 6.544403e-01   p_cons 1.785714e-03   p_joint 2.987403e-02

Joint ci ratio: 2.531726e-02	ci left: 2.944160e-02	ci right 3.019780e-02	k: 23258	n:780000
Cons ci ratio: 1.050867e-01	ci left: 1.687169e-03	ci right 1.875537e-03	k: 1388	n:780000
KS ci ratio: 3.225905e-03	ci left: 6.532934e-01	ci right 6.554055e-01	k: 510393	n:780000
EXT2   780000 perm   395 sec   (1977 perm/sec)   p_kst 6.543500e-01   p_cons 1.779487e-03   p_joint 2.981795e-02

Joint ci ratio: 2.517204e-02	ci left: 2.940853e-02	ci right 3.015948e-02	k: 23528	n:790000
Cons ci ratio: 1.043751e-01	ci left: 1.689233e-03	ci right 1.876476e-03	k: 1407	n:790000
KS ci ratio: 3.206109e-03	ci left: 6.532032e-01	ci right 6.553020e-01	k: 516860	n:790000
EXT2   790000 perm   403 sec   (1962 perm/sec)   p_kst 6.542532e-01   p_cons 1.781013e-03   p_joint 2.978228e-02

Joint ci ratio: 2.501738e-02	ci left: 2.940363e-02	ci right 3.014978e-02	k: 23820	n:800000
Cons ci ratio: 1.036052e-01	ci left: 1.693685e-03	ci right 1.879952e-03	k: 1428	n:800000
KS ci ratio: 3.185960e-03	ci left: 6.532166e-01	ci right 6.553023e-01	k: 523408	n:800000
EXT2   800000 perm   411 sec   (1947 perm/sec)   p_kst 6.542600e-01   p_cons 1.785000e-03   p_joint 2.977500e-02

Joint ci ratio: 2.543600e-02	ci left: 2.812398e-02	ci right 2.884977e-02	k: 23073	n:810000
Cons ci ratio: 1.030301e-01	ci left: 1.692018e-03	ci right 1.877006e-03	k: 1444	n:810000
KS ci ratio: 3.176759e-03	ci left: 6.517188e-01	ci right 6.537937e-01	k: 528733	n:810000
EXT2   810000 perm   419 sec   (1933 perm/sec)   p_kst 6.527568e-01   p_cons 1.782716e-03   p_joint 2.848519e-02

Joint ci ratio: 2.537161e-02	ci left: 2.792880e-02	ci right 2.864771e-02	k: 23195	n:820000
Cons ci ratio: 1.023943e-01	ci left: 1.692771e-03	ci right 1.876631e-03	k: 1462	n:820000
KS ci ratio: 3.157572e-03	ci left: 6.516903e-01	ci right 6.537525e-01	k: 535232	n:820000
EXT2   820000 perm   427 sec   (1919 perm/sec)   p_kst 6.527220e-01   p_cons 1.782927e-03   p_joint 2.828659e-02

Joint ci ratio: 2.521990e-02	ci left: 2.792753e-02	ci right 2.864204e-02	k: 23475	n:830000
Cons ci ratio: 1.020466e-01	ci left: 1.684116e-03	ci right 1.866378e-03	k: 1472	n:830000
KS ci ratio: 3.138595e-03	ci left: 6.516818e-01	ci right 6.537316e-01	k: 541747	n:830000
EXT2   830000 perm   436 sec   (1904 perm/sec)   p_kst 6.527072e-01   p_cons 1.773494e-03   p_joint 2.828313e-02

Joint ci ratio: 2.550963e-02	ci left: 2.699396e-02	ci right 2.769264e-02	k: 22967	n:840000
Cons ci ratio: 1.013947e-01	ci left: 1.686110e-03	ci right 1.867353e-03	k: 1491	n:840000
KS ci ratio: 3.118989e-03	ci left: 6.518141e-01	ci right 6.538515e-01	k: 548380	n:840000
EXT2   840000 perm   444 sec   (1891 perm/sec)   p_kst 6.528333e-01   p_cons 1.775000e-03   p_joint 2.734167e-02

Joint ci ratio: 2.535993e-02	ci left: 2.699435e-02	ci right 2.768887e-02	k: 23239	n:850000
Cons ci ratio: 1.008220e-01	ci left: 1.685768e-03	ci right 1.865890e-03	k: 1508	n:850000
KS ci ratio: 3.100623e-03	ci left: 6.518151e-01	ci right 6.538404e-01	k: 554904	n:850000
EXT2   850000 perm   453 sec   (1878 perm/sec)   p_kst 6.528282e-01   p_cons 1.774118e-03   p_joint 2.734000e-02

Joint ci ratio: 2.543277e-02	ci left: 2.653942e-02	ci right 2.722423e-02	k: 23117	n:860000
Cons ci ratio: 1.001603e-01	ci left: 1.688838e-03	ci right 1.868033e-03	k: 1528	n:860000
KS ci ratio: 3.081826e-03	ci left: 6.519265e-01	ci right 6.539399e-01	k: 561523	n:860000
EXT2   860000 perm   461 sec   (1865 perm/sec)   p_kst 6.529337e-01   p_cons 1.776744e-03   p_joint 2.688023e-02

Joint ci ratio: 2.527608e-02	ci left: 2.656217e-02	ci right 2.724328e-02	k: 23404	n:870000
Cons ci ratio: 9.944718e-02	ci left: 1.694082e-03	ci right 1.872480e-03	k: 1550	n:870000
KS ci ratio: 3.063887e-03	ci left: 6.519584e-01	ci right 6.539601e-01	k: 568075	n:870000
EXT2   870000 perm   470 sec   (1852 perm/sec)   p_kst 6.529598e-01   p_cons 1.781609e-03   p_joint 2.690115e-02

Outputting figure to mutsig2_images.part000000000059/EXT2.6_2409_870000_0.65296_0.0017816_0.026901.png
                gene_name: EXT2
               theta_stop: 0.099 
                    nperm: 870000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.027 

Current progress: 26 percent done.
EXOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
EXOC4   10000 perm   2 sec   (4889 perm/sec)   p_kst 7.953000e-01   p_cons 9.240000e-02   p_joint 2.973000e-01

Joint ci ratio: 4.315085e-02	ci left: 2.857538e-01	ci right 2.984067e-01	k: 5841	n:20000
Cons ci ratio: 8.674154e-02	ci left: 8.861709e-02	ci right 9.670178e-02	k: 1852	n:20000
KS ci ratio: 1.369263e-02	ci left: 7.982778e-01	ci right 8.093337e-01	k: 16077	n:20000
EXOC4   20000 perm   4 sec   (4445 perm/sec)   p_kst 8.038500e-01   p_cons 9.260000e-02   p_joint 2.920500e-01

Outputting figure to mutsig2_images.part000000000059/EXOC4.6_3006_20000_0.80385_0.0926_0.29205.png
                gene_name: EXOC4
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 28 percent done.
FABP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
FABP12   10000 perm   2 sec   (5880 perm/sec)   p_kst 3.538000e-01   p_cons 6.521000e-01   p_joint 4.955000e-01

Outputting figure to mutsig2_images.part000000000059/FABP12.6_437_10000_0.3538_0.6521_0.4955.png
                gene_name: FABP12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 30 percent done.
EXO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
EXO1   10000 perm   2 sec   (5260 perm/sec)   p_kst 4.587000e-01   p_cons 3.510000e-01   p_joint 5.838000e-01

Outputting figure to mutsig2_images.part000000000059/EXO1.5_2593_10000_0.4587_0.351_0.5838.png
                gene_name: EXO1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 32 percent done.
EXOSC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
KS ci ratio: 2.667321e-02	ci left: 6.742815e-01	ci right 6.926115e-01	k: 6835	n:10000
EXOSC10   10000 perm   2 sec   (5273 perm/sec)   p_kst 6.835000e-01   p_cons 1.652000e-01   p_joint 3.673000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC10.5_2758_10000_0.6835_0.1652_0.3673.png
                gene_name: EXOSC10
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
EXTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
EXTL3   10000 perm   2 sec   (5061 perm/sec)   p_kst 4.108000e-01   p_cons 4.299000e-01   p_joint 4.891000e-01

Outputting figure to mutsig2_images.part000000000059/EXTL3.5_2780_10000_0.4108_0.4299_0.4891.png
                gene_name: EXTL3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
EYA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
Cons ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
EYA2   10000 perm   2 sec   (5640 perm/sec)   p_kst 3.413000e-01   p_cons 3.370000e-01   p_joint 4.780000e-01

Outputting figure to mutsig2_images.part000000000059/EYA2.5_1677_10000_0.3413_0.337_0.478.png
                gene_name: EYA2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 38 percent done.
F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
F2   10000 perm   2 sec   (5696 perm/sec)   p_kst 1   p_cons 4.822000e-01   p_joint 8.595000e-01

Outputting figure to mutsig2_images.part000000000059/F2.5_1925_10000_1_0.4822_0.8595.png
                gene_name: F2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 40 percent done.
F2RL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591030e-02	ci left: 8.516164e-01	ci right 8.653740e-01	k: 8586	n:10000
Cons ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
F2RL2   10000 perm   2 sec   (6013 perm/sec)   p_kst 8.637000e-01   p_cons 4.919000e-01   p_joint 8.586000e-01

Outputting figure to mutsig2_images.part000000000059/F2RL2.5_1133_10000_0.8637_0.4919_0.8586.png
                gene_name: F2RL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 42 percent done.
EXOC3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.734739e-02	ci left: 6.633033e-01	ci right 6.817961e-01	k: 6726	n:10000
Cons ci ratio: 2.304807e-02	ci left: 7.344164e-01	ci right 7.516418e-01	k: 7431	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
EXOC3L   10000 perm   2 sec   (5833 perm/sec)   p_kst 4.906000e-01   p_cons 7.431000e-01   p_joint 6.726000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3L.4_2293_10000_0.4906_0.7431_0.6726.png
                gene_name: EXOC3L
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 44 percent done.
EXOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
Cons ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
KS ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
EXOC5   10000 perm   2 sec   (5600 perm/sec)   p_kst 3.550000e-02   p_cons 2.572000e-01   p_joint 2.360000e-02

Joint ci ratio: 1.188317e-01	ci left: 4.852591e-02	ci right 5.470528e-02	k: 1031	n:20000
Cons ci ratio: 4.740284e-02	ci left: 2.487223e-01	ci right 2.608490e-01	k: 5095	n:20000
KS ci ratio: 1.446882e-01	ci left: 3.283349e-02	ci right 3.800272e-02	k: 707	n:20000
EXOC5   20000 perm   4 sec   (5053 perm/sec)   p_kst 3.535000e-02   p_cons 2.547500e-01   p_joint 5.155000e-02

Joint ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
Cons ci ratio: 3.865685e-02	ci left: 2.503069e-01	ci right 2.602072e-01	k: 7657	n:30000
KS ci ratio: 1.131511e-01	ci left: 3.628610e-02	ci right 4.067052e-02	k: 1153	n:30000
EXOC5   30000 perm   6 sec   (4834 perm/sec)   p_kst 3.843333e-02   p_cons 2.552333e-01   p_joint 4.550000e-02

Joint ci ratio: 9.029144e-02	ci left: 4.296459e-02	ci right 4.705179e-02	k: 1799	n:40000
Cons ci ratio: 3.330413e-02	ci left: 2.529467e-01	ci right 2.615386e-01	k: 10289	n:40000
KS ci ratio: 1.003087e-01	ci left: 3.492738e-02	ci right 3.864025e-02	k: 1470	n:40000
EXOC5   40000 perm   9 sec   (4648 perm/sec)   p_kst 3.675000e-02   p_cons 2.572250e-01   p_joint 4.497500e-02

Joint ci ratio: 8.089115e-02	ci left: 4.304248e-02	ci right 4.669059e-02	k: 2242	n:50000
Cons ci ratio: 2.982482e-02	ci left: 2.529352e-01	ci right 2.606131e-01	k: 12838	n:50000
KS ci ratio: 9.017185e-02	ci left: 3.477538e-02	ci right 3.807872e-02	k: 1820	n:50000
EXOC5   50000 perm   11 sec   (4515 perm/sec)   p_kst 3.640000e-02   p_cons 2.567600e-01   p_joint 4.484000e-02

Outputting figure to mutsig2_images.part000000000059/EXOC5.4_2199_50000_0.0364_0.25676_0.04484.png
                gene_name: EXOC5
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 46 percent done.
F2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
Cons ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
KS ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
F2R   10000 perm   2 sec   (6211 perm/sec)   p_kst 3.054000e-01   p_cons 9.249000e-01   p_joint 4.842000e-01

Outputting figure to mutsig2_images.part000000000059/F2R.4_1286_10000_0.3054_0.9249_0.4842.png
                gene_name: F2R
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 48 percent done.
F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
Cons ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
KS ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
F3   10000 perm   2 sec   (6045 perm/sec)   p_kst 7.850000e-02   p_cons 1.639000e-01   p_joint 5.030000e-02

Joint ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
Cons ci ratio: 6.336889e-02	ci left: 1.554867e-01	ci right 1.657121e-01	k: 3211	n:20000
KS ci ratio: 9.815838e-02	ci left: 7.021377e-02	ci right 7.751070e-02	k: 1476	n:20000
F3   20000 perm   4 sec   (5410 perm/sec)   p_kst 7.380000e-02   p_cons 1.605500e-01   p_joint 4.620000e-02

Joint ci ratio: 1.119954e-01	ci left: 3.703198e-02	ci right 4.145782e-02	k: 1176	n:30000
Cons ci ratio: 5.187549e-02	ci left: 1.557360e-01	ci right 1.640633e-01	k: 4796	n:30000
KS ci ratio: 8.011726e-02	ci left: 7.093166e-02	ci right 7.688450e-02	k: 2216	n:30000
F3   30000 perm   6 sec   (5152 perm/sec)   p_kst 7.386667e-02   p_cons 1.598667e-01   p_joint 3.920000e-02

Joint ci ratio: 6.895654e-02	ci left: 7.216660e-02	ci right 7.734533e-02	k: 2989	n:40000
Cons ci ratio: 4.468881e-02	ci left: 1.577077e-01	ci right 1.649415e-01	k: 6452	n:40000
KS ci ratio: 6.954910e-02	ci left: 7.101041e-02	ci right 7.615170e-02	k: 2942	n:40000
F3   40000 perm   8 sec   (4978 perm/sec)   p_kst 7.355000e-02   p_cons 1.613000e-01   p_joint 7.472500e-02

Outputting figure to mutsig2_images.part000000000059/F3.4_912_40000_0.07355_0.1613_0.074725.png
                gene_name: F3
               theta_stop: 0.070 
                    nperm: 40000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 50 percent done.
FAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
Cons ci ratio: 1.960073e-02	ci left: 7.920233e-01	ci right 8.078016e-01	k: 8000	n:10000
KS ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
FAF1   10000 perm   2 sec   (5823 perm/sec)   p_kst 5.110000e-01   p_cons 8.000000e-01   p_joint 7.716000e-01

Outputting figure to mutsig2_images.part000000000059/FAF1.4_2029_10000_0.511_0.8_0.7716.png
                gene_name: FAF1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 52 percent done.
FAIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
Cons ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
FAIM2   10000 perm   2 sec   (6324 perm/sec)   p_kst 6.747000e-01   p_cons 6.333000e-01   p_joint 7.921000e-01

Outputting figure to mutsig2_images.part000000000059/FAIM2.4_999_10000_0.6747_0.6333_0.7921.png
                gene_name: FAIM2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 54 percent done.
FAM105A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
Cons ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
KS ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
FAM105A   10000 perm   2 sec   (5942 perm/sec)   p_kst 6.331000e-01   p_cons 1.208000e-01   p_joint 3.143000e-01

Joint ci ratio: 3.658031e-02	ci left: 3.580241e-01	ci right 3.714153e-01	k: 7294	n:20000
Cons ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
KS ci ratio: 2.121398e-02	ci left: 6.238674e-01	ci right 6.372946e-01	k: 12612	n:20000
FAM105A   20000 perm   4 sec   (5314 perm/sec)   p_kst 6.306000e-01   p_cons 1.199000e-01   p_joint 3.647000e-01

Outputting figure to mutsig2_images.part000000000059/FAM105A.4_1103_20000_0.6306_0.1199_0.3647.png
                gene_name: FAM105A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 56 percent done.
EXOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
EXOC3   10000 perm   2 sec   (5601 perm/sec)   p_kst 3.352000e-01   p_cons 1.961000e-01   p_joint 3.250000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3.3_2286_10000_0.3352_0.1961_0.325.png
                gene_name: EXOC3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 58 percent done.
EXOSC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
Cons ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
KS ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
EXOSC7   10000 perm   2 sec   (6250 perm/sec)   p_kst 2.123000e-01   p_cons 6.117000e-01   p_joint 3.404000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC7.3_908_10000_0.2123_0.6117_0.3404.png
                gene_name: EXOSC7
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
EXT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
EXT1   10000 perm   2 sec   (5620 perm/sec)   p_kst 1   p_cons 9.100000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXT1.3_2285_10000_1_0.91_1.png
                gene_name: EXT1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
EXTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
Cons ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
KS ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
EXTL1   10000 perm   2 sec   (5718 perm/sec)   p_kst 5.505000e-01   p_cons 4.206000e-01   p_joint 7.631000e-01

Outputting figure to mutsig2_images.part000000000059/EXTL1.3_2075_10000_0.5505_0.4206_0.7631.png
                gene_name: EXTL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 64 percent done.
EYA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
Cons ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
KS ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
EYA3   10000 perm   2 sec   (6398 perm/sec)   p_kst 8.922000e-01   p_cons 5.216000e-01   p_joint 7.831000e-01

Outputting figure to mutsig2_images.part000000000059/EYA3.3_1790_10000_0.8922_0.5216_0.7831.png
                gene_name: EYA3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 66 percent done.
F10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
Cons ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
KS ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
F10   10000 perm   2 sec   (6119 perm/sec)   p_kst 5.434000e-01   p_cons 7.308000e-01   p_joint 7.366000e-01

Outputting figure to mutsig2_images.part000000000059/F10.3_1499_10000_0.5434_0.7308_0.7366.png
                gene_name: F10
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 68 percent done.
FAAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
FAAH   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.087000e-01   p_cons 1.100000e-03   p_joint 3.600000e-03

Joint ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
FAAH   20000 perm   4 sec   (5342 perm/sec)   p_kst 1.124500e-01   p_cons 8.500000e-04   p_joint 3.650000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
KS ci ratio: 6.417871e-02	ci left: 1.070392e-01	ci right 1.141697e-01	k: 3317	n:30000
FAAH   30000 perm   6 sec   (5082 perm/sec)   p_kst 1.105667e-01   p_cons 9.333333e-04   p_joint 2.966667e-03

Joint ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
Cons ci ratio: 6.530311e-01	ci left: 6.095429e-04	ci right 1.216705e-03	k: 35	n:40000
KS ci ratio: 5.551006e-02	ci left: 1.077645e-01	ci right 1.139421e-01	k: 4433	n:40000
FAAH   40000 perm   8 sec   (4891 perm/sec)   p_kst 1.108250e-01   p_cons 8.750000e-04   p_joint 2.100000e-03

Joint ci ratio: 2.336056e-01	ci left: 4.945911e-03	ci right 6.272480e-03	k: 279	n:50000
Cons ci ratio: 5.715163e-01	ci left: 6.736319e-04	ci right 1.226963e-03	k: 46	n:50000
KS ci ratio: 4.955683e-02	ci left: 1.084570e-01	ci right 1.139882e-01	k: 5560	n:50000
FAAH   50000 perm   11 sec   (4760 perm/sec)   p_kst 1.112000e-01   p_cons 9.200000e-04   p_joint 5.580000e-03

Joint ci ratio: 2.809819e-01	ci left: 2.779427e-03	ci right 3.702991e-03	k: 193	n:60000
Cons ci ratio: 5.331999e-01	ci left: 6.617451e-04	ci right 1.155265e-03	k: 53	n:60000
KS ci ratio: 4.514092e-02	ci left: 1.091240e-01	ci right 1.141803e-01	k: 6698	n:60000
FAAH   60000 perm   13 sec   (4644 perm/sec)   p_kst 1.116333e-01   p_cons 8.833333e-04   p_joint 3.216667e-03

Joint ci ratio: 2.505128e-01	ci left: 3.049267e-03	ci right 3.935534e-03	k: 243	n:70000
Cons ci ratio: 4.936478e-01	ci left: 6.791374e-04	ci right 1.135304e-03	k: 62	n:70000
KS ci ratio: 4.181198e-02	ci left: 1.092198e-01	ci right 1.138982e-01	k: 7808	n:70000
FAAH   70000 perm   15 sec   (4542 perm/sec)   p_kst 1.115429e-01   p_cons 8.857143e-04   p_joint 3.471429e-03

Joint ci ratio: 2.516042e-01	ci left: 2.644610e-03	ci right 3.417128e-03	k: 241	n:80000
Cons ci ratio: 4.650090e-01	ci left: 6.821670e-04	ci right 1.105382e-03	k: 70	n:80000
KS ci ratio: 3.912284e-02	ci left: 1.093144e-01	ci right 1.136888e-01	k: 8919	n:80000
FAAH   80000 perm   18 sec   (4459 perm/sec)   p_kst 1.114875e-01   p_cons 8.750000e-04   p_joint 3.012500e-03

Joint ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
Cons ci ratio: 4.494625e-01	ci left: 6.555242e-04	ci right 1.044480e-03	k: 75	n:90000
KS ci ratio: 3.686884e-02	ci left: 1.095278e-01	ci right 1.136528e-01	k: 10042	n:90000
FAAH   90000 perm   21 sec   (4369 perm/sec)   p_kst 1.115778e-01   p_cons 8.333333e-04   p_joint 2.222222e-03

Joint ci ratio: 3.396793e-01	ci left: 1.104547e-03	ci right 1.565160e-03	k: 132	n:100000
Cons ci ratio: 4.300952e-01	ci left: 6.522218e-04	ci right 1.017736e-03	k: 82	n:100000
KS ci ratio: 3.499256e-02	ci left: 1.095456e-01	ci right 1.134570e-01	k: 11149	n:100000
FAAH   100000 perm   23 sec   (4285 perm/sec)   p_kst 1.114900e-01   p_cons 8.200000e-04   p_joint 1.320000e-03

Joint ci ratio: 3.702149e-01	ci left: 8.301917e-04	ci right 1.215080e-03	k: 111	n:110000
Cons ci ratio: 4.177043e-01	ci left: 6.335328e-04	ci right 9.754933e-04	k: 87	n:110000
KS ci ratio: 3.338709e-02	ci left: 1.095013e-01	ci right 1.132283e-01	k: 12249	n:110000
FAAH   110000 perm   26 sec   (4211 perm/sec)   p_kst 1.113545e-01   p_cons 7.909091e-04   p_joint 1.009091e-03

Joint ci ratio: 3.805743e-01	ci left: 7.157174e-04	ci right 1.059143e-03	k: 105	n:120000
Cons ci ratio: 3.999216e-01	ci left: 6.405514e-04	ci right 9.676862e-04	k: 95	n:120000
KS ci ratio: 3.199757e-02	ci left: 1.093851e-01	ci right 1.129504e-01	k: 13339	n:120000
FAAH   120000 perm   29 sec   (4144 perm/sec)   p_kst 1.111583e-01   p_cons 7.916667e-04   p_joint 8.750000e-04

Joint ci ratio: 3.622396e-01	ci left: 7.373854e-04	ci right 1.070143e-03	k: 116	n:130000
Cons ci ratio: 3.823968e-01	ci left: 6.537033e-04	ci right 9.692518e-04	k: 104	n:130000
KS ci ratio: 3.083196e-02	ci left: 1.088847e-01	ci right 1.123020e-01	k: 14376	n:130000
FAAH   130000 perm   32 sec   (4079 perm/sec)   p_kst 1.105846e-01   p_cons 8.000000e-04   p_joint 8.923077e-04

Joint ci ratio: 2.303493e-01	ci left: 1.826600e-03	ci right 2.308682e-03	k: 288	n:140000
Cons ci ratio: 3.547442e-01	ci left: 7.172116e-04	ci right 1.032624e-03	k: 121	n:140000
KS ci ratio: 2.970279e-02	ci left: 1.089971e-01	ci right 1.122905e-01	k: 15489	n:140000
FAAH   140000 perm   35 sec   (4017 perm/sec)   p_kst 1.106357e-01   p_cons 8.642857e-04   p_joint 2.057143e-03

Joint ci ratio: 2.438378e-01	ci left: 1.510395e-03	ci right 1.935903e-03	k: 257	n:150000
Cons ci ratio: 3.372269e-01	ci left: 7.485401e-04	ci right 1.057943e-03	k: 134	n:150000
KS ci ratio: 2.867759e-02	ci left: 1.091760e-01	ci right 1.123591e-01	k: 16614	n:150000
FAAH   150000 perm   38 sec   (3955 perm/sec)   p_kst 1.107600e-01   p_cons 8.933333e-04   p_joint 1.713333e-03

Joint ci ratio: 2.401500e-01	ci left: 1.462959e-03	ci right 1.867942e-03	k: 265	n:160000
Cons ci ratio: 3.167607e-01	ci left: 8.050345e-04	ci right 1.113510e-03	k: 152	n:160000
KS ci ratio: 2.779225e-02	ci left: 1.090485e-01	ci right 1.121281e-01	k: 17693	n:160000
FAAH   160000 perm   41 sec   (3896 perm/sec)   p_kst 1.105813e-01   p_cons 9.500000e-04   p_joint 1.656250e-03

Joint ci ratio: 2.410712e-01	ci left: 1.365839e-03	ci right 1.745603e-03	k: 263	n:170000
Cons ci ratio: 3.107299e-01	ci left: 7.901940e-04	ci right 1.086075e-03	k: 158	n:170000
KS ci ratio: 2.695589e-02	ci left: 1.091420e-01	ci right 1.121301e-01	k: 18807	n:170000
FAAH   170000 perm   44 sec   (3841 perm/sec)   p_kst 1.106294e-01   p_cons 9.294118e-04   p_joint 1.547059e-03

Joint ci ratio: 2.605901e-01	ci left: 1.092077e-03	ci right 1.424321e-03	k: 225	n:180000
Cons ci ratio: 3.022926e-01	ci left: 7.924499e-04	ci right 1.079571e-03	k: 167	n:180000
KS ci ratio: 2.621223e-02	ci left: 1.090662e-01	ci right 1.119686e-01	k: 19892	n:180000
FAAH   180000 perm   48 sec   (3787 perm/sec)   p_kst 1.105111e-01   p_cons 9.277778e-04   p_joint 1.250000e-03

Joint ci ratio: 2.749823e-01	ci left: 9.216554e-04	ci right 1.220220e-03	k: 202	n:190000
Cons ci ratio: 2.961869e-01	ci left: 7.848182e-04	ci right 1.062352e-03	k: 174	n:190000
KS ci ratio: 2.549071e-02	ci left: 1.092768e-01	ci right 1.121035e-01	k: 21030	n:190000
FAAH   190000 perm   51 sec   (3736 perm/sec)   p_kst 1.106842e-01   p_cons 9.157895e-04   p_joint 1.063158e-03

Joint ci ratio: 3.938763e-01	ci left: 3.978230e-04	ci right 5.971211e-04	k: 98	n:200000
Cons ci ratio: 2.880701e-01	ci left: 7.919148e-04	ci right 1.062887e-03	k: 184	n:200000
KS ci ratio: 2.507570e-02	ci left: 1.075180e-01	ci right 1.102533e-01	k: 21776	n:200000
FAAH   200000 perm   54 sec   (3688 perm/sec)   p_kst 1.088800e-01   p_cons 9.200000e-04   p_joint 4.900000e-04

Joint ci ratio: 2.487726e-01	ci left: 1.034140e-03	ci right 1.332284e-03	k: 247	n:210000
Cons ci ratio: 2.820374e-01	ci left: 7.895766e-04	ci right 1.053085e-03	k: 192	n:210000
KS ci ratio: 2.451040e-02	ci left: 1.072439e-01	ci right 1.099098e-01	k: 22800	n:210000
FAAH   210000 perm   58 sec   (3638 perm/sec)   p_kst 1.085714e-01   p_cons 9.142857e-04   p_joint 1.176190e-03

Joint ci ratio: 2.458201e-01	ci left: 1.012715e-03	ci right 1.300687e-03	k: 253	n:220000
Cons ci ratio: 2.756830e-01	ci left: 7.917358e-04	ci right 1.048979e-03	k: 201	n:220000
KS ci ratio: 2.395912e-02	ci left: 1.071762e-01	ci right 1.097796e-01	k: 23864	n:220000
FAAH   220000 perm   61 sec   (3589 perm/sec)   p_kst 1.084727e-01   p_cons 9.136364e-04   p_joint 1.150000e-03

Joint ci ratio: 2.429701e-01	ci left: 9.931723e-04	ci right 1.271819e-03	k: 259	n:230000
Cons ci ratio: 2.691020e-01	ci left: 7.978222e-04	ci right 1.049811e-03	k: 211	n:230000
KS ci ratio: 2.342394e-02	ci left: 1.072750e-01	ci right 1.098219e-01	k: 24965	n:230000
FAAH   230000 perm   65 sec   (3541 perm/sec)   p_kst 1.085435e-01   p_cons 9.173913e-04   p_joint 1.126087e-03

Joint ci ratio: 2.415846e-01	ci left: 9.635294e-04	ci right 1.232087e-03	k: 262	n:240000
Cons ci ratio: 2.659861e-01	ci left: 7.840149e-04	ci right 1.028298e-03	k: 216	n:240000
KS ci ratio: 2.292555e-02	ci left: 1.073454e-01	ci right 1.098390e-01	k: 26061	n:240000
FAAH   240000 perm   69 sec   (3493 perm/sec)   p_kst 1.085875e-01   p_cons 9.000000e-04   p_joint 1.091667e-03

Joint ci ratio: 2.362544e-01	ci left: 9.701156e-04	ci right 1.233670e-03	k: 274	n:250000
Cons ci ratio: 2.594894e-01	ci left: 7.937575e-04	ci right 1.034056e-03	k: 227	n:250000
KS ci ratio: 2.245537e-02	ci left: 1.074307e-01	ci right 1.098744e-01	k: 27162	n:250000
FAAH   250000 perm   72 sec   (3449 perm/sec)   p_kst 1.086480e-01   p_cons 9.080000e-04   p_joint 1.096000e-03

Joint ci ratio: 1.536810e-01	ci left: 2.304294e-03	ci right 2.691544e-03	k: 648	n:260000
Cons ci ratio: 2.529176e-01	ci left: 8.064196e-04	ci right 1.043394e-03	k: 239	n:260000
KS ci ratio: 2.200904e-02	ci left: 1.075443e-01	ci right 1.099414e-01	k: 28272	n:260000
FAAH   260000 perm   76 sec   (3408 perm/sec)   p_kst 1.087385e-01   p_cons 9.192308e-04   p_joint 2.492308e-03

Joint ci ratio: 1.504686e-01	ci left: 2.318709e-03	ci right 2.699503e-03	k: 676	n:270000
Cons ci ratio: 2.468211e-01	ci left: 8.182147e-04	ci right 1.051971e-03	k: 251	n:270000
KS ci ratio: 2.160027e-02	ci left: 1.075430e-01	ci right 1.098950e-01	k: 29353	n:270000
FAAH   270000 perm   80 sec   (3366 perm/sec)   p_kst 1.087148e-01   p_cons 9.296296e-04   p_joint 2.503704e-03

Joint ci ratio: 1.709221e-01	ci left: 1.714735e-03	ci right 2.038572e-03	k: 524	n:280000
Cons ci ratio: 2.416036e-01	ci left: 8.258751e-04	ci right 1.056085e-03	k: 262	n:280000
KS ci ratio: 2.120292e-02	ci left: 1.076382e-01	ci right 1.099484e-01	k: 30461	n:280000
FAAH   280000 perm   84 sec   (3325 perm/sec)   p_kst 1.087893e-01   p_cons 9.357143e-04   p_joint 1.871429e-03

Joint ci ratio: 1.702790e-01	ci left: 1.668807e-03	ci right 1.982662e-03	k: 528	n:290000
Cons ci ratio: 2.358436e-01	ci left: 8.395440e-04	ci right 1.067171e-03	k: 275	n:290000
KS ci ratio: 2.082634e-02	ci left: 1.077307e-01	ci right 1.100013e-01	k: 31570	n:290000
FAAH   290000 perm   88 sec   (3283 perm/sec)   p_kst 1.088621e-01   p_cons 9.482759e-04   p_joint 1.820690e-03

Joint ci ratio: 1.858969e-01	ci left: 1.342430e-03	ci right 1.620676e-03	k: 443	n:300000
Cons ci ratio: 2.312792e-01	ci left: 8.460809e-04	ci right 1.070406e-03	k: 286	n:300000
KS ci ratio: 2.048497e-02	ci left: 1.076679e-01	ci right 1.098996e-01	k: 32634	n:300000
FAAH   300000 perm   93 sec   (3243 perm/sec)   p_kst 1.087800e-01   p_cons 9.533333e-04   p_joint 1.476667e-03

Joint ci ratio: 1.824365e-01	ci left: 1.351437e-03	ci right 1.625759e-03	k: 460	n:310000
Cons ci ratio: 2.269700e-01	ci left: 8.522356e-04	ci right 1.073394e-03	k: 297	n:310000
KS ci ratio: 2.015248e-02	ci left: 1.076802e-01	ci right 1.098755e-01	k: 33720	n:310000
FAAH   310000 perm   97 sec   (3204 perm/sec)   p_kst 1.087742e-01   p_cons 9.580645e-04   p_joint 1.483871e-03

Joint ci ratio: 1.996612e-01	ci left: 1.083026e-03	ci right 1.326152e-03	k: 384	n:320000
Cons ci ratio: 2.247203e-01	ci left: 8.432921e-04	ci right 1.059660e-03	k: 303	n:320000
KS ci ratio: 1.982863e-02	ci left: 1.077604e-01	ci right 1.099217e-01	k: 34828	n:320000
FAAH   320000 perm   101 sec   (3166 perm/sec)   p_kst 1.088375e-01   p_cons 9.468750e-04   p_joint 1.200000e-03

Joint ci ratio: 2.020431e-01	ci left: 1.024302e-03	ci right 1.257328e-03	k: 375	n:330000
Cons ci ratio: 2.211128e-01	ci left: 8.463491e-04	ci right 1.059541e-03	k: 313	n:330000
KS ci ratio: 1.950956e-02	ci left: 1.079387e-01	ci right 1.100682e-01	k: 35970	n:330000
FAAH   330000 perm   105 sec   (3130 perm/sec)   p_kst 1.090000e-01   p_cons 9.484848e-04   p_joint 1.136364e-03

Joint ci ratio: 2.042332e-01	ci left: 9.718404e-04	ci right 1.195626e-03	k: 367	n:340000
Cons ci ratio: 2.190312e-01	ci left: 8.381304e-04	ci right 1.046997e-03	k: 319	n:340000
KS ci ratio: 1.921063e-02	ci left: 1.080539e-01	ci right 1.101527e-01	k: 37094	n:340000
FAAH   340000 perm   110 sec   (3094 perm/sec)   p_kst 1.091000e-01   p_cons 9.382353e-04   p_joint 1.079412e-03

Joint ci ratio: 2.007181e-01	ci left: 9.793338e-04	ci right 1.200489e-03	k: 380	n:350000
Cons ci ratio: 2.143902e-01	ci left: 8.520137e-04	ci right 1.059249e-03	k: 333	n:350000
KS ci ratio: 1.894368e-02	ci left: 1.079722e-01	ci right 1.100400e-01	k: 38151	n:350000
FAAH   350000 perm   114 sec   (3058 perm/sec)   p_kst 1.090029e-01   p_cons 9.514286e-04   p_joint 1.085714e-03

Joint ci ratio: 1.966304e-01	ci left: 9.943646e-04	ci right 1.213793e-03	k: 396	n:360000
Cons ci ratio: 2.097308e-01	ci left: 8.678015e-04	ci right 1.073701e-03	k: 348	n:360000
KS ci ratio: 1.868194e-02	ci left: 1.079533e-01	ci right 1.099919e-01	k: 39229	n:360000
FAAH   360000 perm   119 sec   (3024 perm/sec)   p_kst 1.089694e-01   p_cons 9.666667e-04   p_joint 1.100000e-03

Joint ci ratio: 1.958938e-01	ci left: 9.751986e-04	ci right 1.189495e-03	k: 399	n:370000
Cons ci ratio: 2.042422e-01	ci left: 8.930387e-04	ci right 1.098689e-03	k: 367	n:370000
KS ci ratio: 1.842897e-02	ci left: 1.079545e-01	ci right 1.099651e-01	k: 40314	n:370000
FAAH   370000 perm   124 sec   (2991 perm/sec)   p_kst 1.089568e-01   p_cons 9.918919e-04   p_joint 1.078378e-03

Joint ci ratio: 1.946823e-01	ci left: 9.620494e-04	ci right 1.171994e-03	k: 404	n:380000
Cons ci ratio: 2.017898e-01	ci left: 8.920179e-04	ci right 1.094663e-03	k: 376	n:380000
KS ci ratio: 1.819093e-02	ci left: 1.079034e-01	ci right 1.098868e-01	k: 41379	n:380000
FAAH   380000 perm   128 sec   (2959 perm/sec)   p_kst 1.088921e-01   p_cons 9.894737e-04   p_joint 1.063158e-03

Joint ci ratio: 1.920910e-01	ci left: 9.642211e-04	ci right 1.171512e-03	k: 415	n:390000
Cons ci ratio: 1.994237e-01	ci left: 8.910634e-04	ci right 1.090829e-03	k: 385	n:390000
KS ci ratio: 1.795927e-02	ci left: 1.078831e-01	ci right 1.098407e-01	k: 42455	n:390000
FAAH   390000 perm   133 sec   (2927 perm/sec)   p_kst 1.088590e-01   p_cons 9.871795e-04   p_joint 1.064103e-03

Joint ci ratio: 1.932597e-01	ci left: 9.282169e-04	ci right 1.129124e-03	k: 410	n:400000
Cons ci ratio: 1.973892e-01	ci left: 8.877932e-04	ci right 1.084551e-03	k: 393	n:400000
KS ci ratio: 1.772916e-02	ci left: 1.079412e-01	ci right 1.098745e-01	k: 43562	n:400000
FAAH   400000 perm   138 sec   (2895 perm/sec)   p_kst 1.089050e-01   p_cons 9.825000e-04   p_joint 1.025000e-03

Joint ci ratio: 1.909508e-01	ci left: 9.287947e-04	ci right 1.127146e-03	k: 420	n:410000
Cons ci ratio: 1.934979e-01	ci left: 9.032553e-04	ci right 1.099029e-03	k: 409	n:410000
KS ci ratio: 1.750723e-02	ci left: 1.080015e-01	ci right 1.099114e-01	k: 44671	n:410000
FAAH   410000 perm   143 sec   (2865 perm/sec)   p_kst 1.089537e-01   p_cons 9.975610e-04   p_joint 1.024390e-03

Joint ci ratio: 1.896054e-01	ci left: 9.202853e-04	ci right 1.115275e-03	k: 426	n:420000
Cons ci ratio: 1.918677e-01	ci left: 8.976117e-04	ci right 1.090332e-03	k: 416	n:420000
KS ci ratio: 1.730787e-02	ci left: 1.078977e-01	ci right 1.097839e-01	k: 45712	n:420000
FAAH   420000 perm   148 sec   (2835 perm/sec)   p_kst 1.088381e-01   p_cons 9.904762e-04   p_joint 1.014286e-03

Joint ci ratio: 1.891647e-01	ci left: 9.033132e-04	ci right 1.094211e-03	k: 428	n:430000
Cons ci ratio: 1.893858e-01	ci left: 9.010977e-04	ci right 1.091776e-03	k: 427	n:430000
KS ci ratio: 1.710408e-02	ci left: 1.079240e-01	ci right 1.097882e-01	k: 46807	n:430000
FAAH   430000 perm   153 sec   (2805 perm/sec)   p_kst 1.088535e-01   p_cons 9.930233e-04   p_joint 9.953488e-04

Joint ci ratio: 1.872114e-01	ci left: 9.022743e-04	ci right 1.090760e-03	k: 437	n:440000
Cons ci ratio: 1.863615e-01	ci left: 9.109405e-04	ci right 1.100275e-03	k: 441	n:440000
KS ci ratio: 1.690099e-02	ci left: 1.080218e-01	ci right 1.098652e-01	k: 47934	n:440000
FAAH   440000 perm   159 sec   (2775 perm/sec)   p_kst 1.089409e-01   p_cons 1.002273e-03   p_joint 9.931818e-04

Joint ci ratio: 1.840847e-01	ci left: 9.140085e-04	ci right 1.101401e-03	k: 452	n:450000
Cons ci ratio: 1.844929e-01	ci left: 9.097689e-04	ci right 1.096752e-03	k: 450	n:450000
KS ci ratio: 1.670630e-02	ci left: 1.080997e-01	ci right 1.099231e-01	k: 49054	n:450000
FAAH   450000 perm   164 sec   (2747 perm/sec)   p_kst 1.090089e-01   p_cons 1.000000e-03   p_joint 1.004444e-03

Joint ci ratio: 1.832786e-01	ci left: 9.024341e-04	ci right 1.086553e-03	k: 456	n:460000
Cons ci ratio: 1.824809e-01	ci left: 9.107320e-04	ci right 1.095646e-03	k: 460	n:460000
KS ci ratio: 1.653021e-02	ci left: 1.080337e-01	ci right 1.098365e-01	k: 50109	n:460000
FAAH   460000 perm   169 sec   (2719 perm/sec)   p_kst 1.089326e-01   p_cons 1.000000e-03   p_joint 9.913043e-04

Joint ci ratio: 2.051023e-01	ci left: 6.969672e-04	ci right 8.582258e-04	k: 364	n:470000
Cons ci ratio: 1.809183e-01	ci left: 9.076017e-04	ci right 1.090129e-03	k: 468	n:470000
KS ci ratio: 1.636387e-02	ci left: 1.079196e-01	ci right 1.097022e-01	k: 51140	n:470000
FAAH   470000 perm   175 sec   (2692 perm/sec)   p_kst 1.088085e-01   p_cons 9.957447e-04   p_joint 7.744681e-04

Joint ci ratio: 2.051039e-01	ci left: 6.824465e-04	ci right 8.403468e-04	k: 364	n:480000
Cons ci ratio: 1.795836e-01	ci left: 9.026185e-04	ci right 1.082659e-03	k: 475	n:480000
KS ci ratio: 1.618263e-02	ci left: 1.080470e-01	ci right 1.098118e-01	k: 52285	n:480000
FAAH   480000 perm   180 sec   (2665 perm/sec)   p_kst 1.089271e-01   p_cons 9.895833e-04   p_joint 7.583333e-04

Joint ci ratio: 2.118951e-01	ci left: 6.240283e-04	ci right 7.738142e-04	k: 341	n:490000
Cons ci ratio: 1.773615e-01	ci left: 9.075937e-04	ci right 1.086146e-03	k: 487	n:490000
KS ci ratio: 1.600879e-02	ci left: 1.081511e-01	ci right 1.098984e-01	k: 53421	n:490000
FAAH   490000 perm   186 sec   (2638 perm/sec)   p_kst 1.090224e-01   p_cons 9.938776e-04   p_joint 6.959184e-04

Joint ci ratio: 2.079779e-01	ci left: 6.361814e-04	ci right 7.857022e-04	k: 354	n:500000
Cons ci ratio: 1.757484e-01	ci left: 9.066463e-04	ci right 1.083218e-03	k: 496	n:500000
KS ci ratio: 1.585414e-02	ci left: 1.080837e-01	ci right 1.098129e-01	k: 54473	n:500000
FAAH   500000 perm   191 sec   (2612 perm/sec)   p_kst 1.089460e-01   p_cons 9.920000e-04   p_joint 7.080000e-04

Joint ci ratio: 2.062426e-01	ci left: 6.348618e-04	ci right 7.826704e-04	k: 360	n:510000
Cons ci ratio: 1.731540e-01	ci left: 9.169970e-04	ci right 1.092673e-03	k: 511	n:510000
KS ci ratio: 1.568787e-02	ci left: 1.082163e-01	ci right 1.099293e-01	k: 55626	n:510000
FAAH   510000 perm   197 sec   (2586 perm/sec)   p_kst 1.090706e-01   p_cons 1.001961e-03   p_joint 7.058824e-04

Joint ci ratio: 2.034435e-01	ci left: 6.408975e-04	ci right 7.878346e-04	k: 370	n:520000
Cons ci ratio: 1.718172e-01	ci left: 9.140827e-04	ci right 1.087708e-03	k: 519	n:520000
KS ci ratio: 1.553118e-02	ci left: 1.082883e-01	ci right 1.099852e-01	k: 56750	n:520000
FAAH   520000 perm   203 sec   (2562 perm/sec)   p_kst 1.091346e-01   p_cons 9.980769e-04   p_joint 7.115385e-04

Joint ci ratio: 2.053931e-01	ci left: 6.162728e-04	ci right 7.590882e-04	k: 363	n:530000
Cons ci ratio: 1.713249e-01	ci left: 9.022527e-04	ci right 1.073089e-03	k: 522	n:530000
KS ci ratio: 1.538312e-02	ci left: 1.083070e-01	ci right 1.099879e-01	k: 57847	n:530000
FAAH   530000 perm   209 sec   (2538 perm/sec)   p_kst 1.091453e-01   p_cons 9.849057e-04   p_joint 6.849057e-04

Joint ci ratio: 2.039971e-01	ci left: 6.136449e-04	ci right 7.547644e-04	k: 368	n:540000
Cons ci ratio: 1.693922e-01	ci left: 9.068193e-04	ci right 1.076386e-03	k: 534	n:540000
KS ci ratio: 1.523937e-02	ci left: 1.083232e-01	ci right 1.099884e-01	k: 58943	n:540000
FAAH   540000 perm   215 sec   (2514 perm/sec)   p_kst 1.091537e-01   p_cons 9.888889e-04   p_joint 6.814815e-04

Joint ci ratio: 2.031736e-01	ci left: 6.076640e-04	ci right 7.467739e-04	k: 371	n:550000
Cons ci ratio: 1.679853e-01	ci left: 9.060044e-04	ci right 1.073869e-03	k: 543	n:550000
KS ci ratio: 1.510634e-02	ci left: 1.082518e-01	ci right 1.099014e-01	k: 59991	n:550000
FAAH   550000 perm   221 sec   (2491 perm/sec)   p_kst 1.090745e-01   p_cons 9.872727e-04   p_joint 6.745455e-04

Joint ci ratio: 2.031748e-01	ci left: 5.968125e-04	ci right 7.334391e-04	k: 371	n:560000
Cons ci ratio: 1.663121e-01	ci left: 9.086470e-04	ci right 1.075156e-03	k: 554	n:560000
KS ci ratio: 1.497055e-02	ci left: 1.082632e-01	ci right 1.098980e-01	k: 61084	n:560000
FAAH   560000 perm   227 sec   (2468 perm/sec)   p_kst 1.090786e-01   p_cons 9.892857e-04   p_joint 6.625000e-04

Joint ci ratio: 1.981747e-01	ci left: 6.180015e-04	ci right 7.555766e-04	k: 390	n:570000
Cons ci ratio: 1.646879e-01	ci left: 9.112049e-04	ci right 1.076391e-03	k: 565	n:570000
KS ci ratio: 1.483943e-02	ci left: 1.082603e-01	ci right 1.098805e-01	k: 62169	n:570000
FAAH   570000 perm   233 sec   (2445 perm/sec)   p_kst 1.090684e-01   p_cons 9.912281e-04   p_joint 6.842105e-04

Joint ci ratio: 1.961778e-01	ci left: 6.204586e-04	ci right 7.570225e-04	k: 398	n:580000
Cons ci ratio: 1.632521e-01	ci left: 9.120284e-04	ci right 1.075780e-03	k: 575	n:580000
KS ci ratio: 1.471234e-02	ci left: 1.082489e-01	ci right 1.098550e-01	k: 63249	n:580000
FAAH   580000 perm   239 sec   (2423 perm/sec)   p_kst 1.090500e-01   p_cons 9.913793e-04   p_joint 6.862069e-04

Joint ci ratio: 1.952022e-01	ci left: 6.163897e-04	ci right 7.513032e-04	k: 402	n:590000
Cons ci ratio: 1.621303e-01	ci left: 9.095774e-04	ci right 1.071658e-03	k: 583	n:590000
KS ci ratio: 1.458910e-02	ci left: 1.082295e-01	ci right 1.098218e-01	k: 64324	n:590000
FAAH   590000 perm   246 sec   (2402 perm/sec)   p_kst 1.090237e-01   p_cons 9.881356e-04   p_joint 6.813559e-04

Joint ci ratio: 1.865979e-01	ci left: 6.664262e-04	ci right 8.051345e-04	k: 440	n:600000
Cons ci ratio: 1.610314e-01	ci left: 9.072119e-04	ci right 1.067669e-03	k: 591	n:600000
KS ci ratio: 1.446097e-02	ci left: 1.083172e-01	ci right 1.098966e-01	k: 65463	n:600000
FAAH   600000 perm   252 sec   (2380 perm/sec)   p_kst 1.091050e-01   p_cons 9.850000e-04   p_joint 7.333333e-04

Joint ci ratio: 1.853415e-01	ci left: 6.648792e-04	ci right 8.022291e-04	k: 446	n:610000
Cons ci ratio: 1.596883e-01	ci left: 9.080752e-04	ci right 1.067217e-03	k: 601	n:610000
KS ci ratio: 1.433833e-02	ci left: 1.083726e-01	ci right 1.099393e-01	k: 66584	n:610000
FAAH   610000 perm   259 sec   (2359 perm/sec)   p_kst 1.091541e-01   p_cons 9.852459e-04   p_joint 7.311475e-04

Joint ci ratio: 1.914397e-01	ci left: 6.111218e-04	ci right 7.420040e-04	k: 418	n:620000
Cons ci ratio: 1.586379e-01	ci left: 9.058180e-04	ci right 1.063421e-03	k: 609	n:620000
KS ci ratio: 1.422654e-02	ci left: 1.083202e-01	ci right 1.098738e-01	k: 67639	n:620000
FAAH   620000 perm   265 sec   (2340 perm/sec)   p_kst 1.090952e-01   p_cons 9.822581e-04   p_joint 6.741935e-04

Joint ci ratio: 1.905328e-01	ci left: 6.074669e-04	ci right 7.368787e-04	k: 422	n:630000
Cons ci ratio: 1.574806e-01	ci left: 9.051606e-04	ci right 1.061391e-03	k: 618	n:630000
KS ci ratio: 1.411318e-02	ci left: 1.083264e-01	ci right 1.098677e-01	k: 68730	n:630000
FAAH   630000 perm   272 sec   (2319 perm/sec)   p_kst 1.090952e-01   p_cons 9.809524e-04   p_joint 6.698413e-04

Joint ci ratio: 1.887560e-01	ci left: 6.098819e-04	ci right 7.384576e-04	k: 430	n:640000
Cons ci ratio: 1.562237e-01	ci left: 9.060292e-04	ci right 1.061045e-03	k: 628	n:640000
KS ci ratio: 1.399798e-02	ci left: 1.083948e-01	ci right 1.099244e-01	k: 69861	n:640000
FAAH   640000 perm   278 sec   (2300 perm/sec)   p_kst 1.091578e-01   p_cons 9.812500e-04   p_joint 6.718750e-04

Joint ci ratio: 1.876708e-01	ci left: 6.078289e-04	ci right 7.351512e-04	k: 435	n:650000
Cons ci ratio: 1.556070e-01	ci left: 8.994823e-04	ci right 1.052714e-03	k: 633	n:650000
KS ci ratio: 1.389127e-02	ci left: 1.083814e-01	ci right 1.098990e-01	k: 70940	n:650000
FAAH   650000 perm   285 sec   (2280 perm/sec)   p_kst 1.091385e-01   p_cons 9.738462e-04   p_joint 6.692308e-04

Joint ci ratio: 1.859722e-01	ci left: 6.101738e-04	ci right 7.366999e-04	k: 443	n:660000
Cons ci ratio: 1.546347e-01	ci left: 8.975044e-04	ci right 1.049355e-03	k: 641	n:660000
KS ci ratio: 1.377880e-02	ci left: 1.084833e-01	ci right 1.099899e-01	k: 72095	n:660000
FAAH   660000 perm   292 sec   (2261 perm/sec)   p_kst 1.092348e-01   p_cons 9.712121e-04   p_joint 6.712121e-04

Joint ci ratio: 1.843189e-01	ci left: 6.124537e-04	ci right 7.381974e-04	k: 451	n:670000
Cons ci ratio: 1.539175e-01	ci left: 8.927182e-04	ci right 1.042994e-03	k: 647	n:670000
KS ci ratio: 1.368318e-02	ci left: 1.083812e-01	ci right 1.098759e-01	k: 73115	n:670000
FAAH   670000 perm   299 sec   (2242 perm/sec)   p_kst 1.091269e-01   p_cons 9.656716e-04   p_joint 6.731343e-04

Joint ci ratio: 1.831077e-01	ci left: 6.118647e-04	ci right 7.365704e-04	k: 457	n:680000
Cons ci ratio: 1.532103e-01	ci left: 8.880743e-04	ci right 1.036818e-03	k: 653	n:680000
KS ci ratio: 1.358233e-02	ci left: 1.083849e-01	ci right 1.098685e-01	k: 74205	n:680000
FAAH   680000 perm   306 sec   (2224 perm/sec)   p_kst 1.091250e-01   p_cons 9.602941e-04   p_joint 6.720588e-04

Joint ci ratio: 1.809471e-01	ci left: 6.182130e-04	ci right 7.425629e-04	k: 468	n:690000
Cons ci ratio: 1.520522e-01	ci left: 8.891429e-04	ci right 1.036838e-03	k: 663	n:690000
KS ci ratio: 1.348629e-02	ci left: 1.083509e-01	ci right 1.098234e-01	k: 75269	n:690000
FAAH   690000 perm   313 sec   (2206 perm/sec)   p_kst 1.090855e-01   p_cons 9.608696e-04   p_joint 6.782609e-04

Joint ci ratio: 1.796117e-01	ci left: 6.189301e-04	ci right 7.424056e-04	k: 475	n:700000
Cons ci ratio: 1.505849e-01	ci left: 8.943093e-04	ci right 1.041299e-03	k: 676	n:700000
KS ci ratio: 1.338734e-02	ci left: 1.083891e-01	ci right 1.098513e-01	k: 76383	n:700000
FAAH   700000 perm   320 sec   (2188 perm/sec)   p_kst 1.091186e-01   p_cons 9.657143e-04   p_joint 6.785714e-04

Joint ci ratio: 1.625623e-01	ci left: 7.517873e-04	ci right 8.861422e-04	k: 580	n:710000
Cons ci ratio: 1.493761e-01	ci left: 8.966250e-04	ci right 1.042707e-03	k: 687	n:710000
KS ci ratio: 1.329226e-02	ci left: 1.084010e-01	ci right 1.098529e-01	k: 77479	n:710000
FAAH   710000 perm   327 sec   (2171 perm/sec)   p_kst 1.091254e-01   p_cons 9.676056e-04   p_joint 8.169014e-04

Joint ci ratio: 7.217254e-02	ci left: 3.933246e-03	ci right 4.229099e-03	k: 2937	n:720000
Cons ci ratio: 1.193584e-01	ci left: 1.406534e-03	ci right 1.586404e-03	k: 1076	n:720000
KS ci ratio: 1.319636e-02	ci left: 1.084542e-01	ci right 1.098962e-01	k: 78605	n:720000
FAAH   720000 perm   334 sec   (2154 perm/sec)   p_kst 1.091736e-01   p_cons 1.494444e-03   p_joint 4.079167e-03

Joint ci ratio: 7.752233e-02	ci left: 3.355066e-03	ci right 3.626980e-03	k: 2547	n:730000
Cons ci ratio: 1.183189e-01	ci left: 1.412521e-03	ci right 1.591473e-03	k: 1095	n:730000
KS ci ratio: 1.310850e-02	ci left: 1.084171e-01	ci right 1.098490e-01	k: 79666	n:730000
FAAH   730000 perm   342 sec   (2137 perm/sec)   p_kst 1.091315e-01   p_cons 1.500000e-03   p_joint 3.489041e-03

Joint ci ratio: 7.677194e-02	ci left: 3.375993e-03	ci right 3.646836e-03	k: 2597	n:740000
Cons ci ratio: 1.171485e-01	ci left: 1.422287e-03	ci right 1.600571e-03	k: 1117	n:740000
KS ci ratio: 1.301776e-02	ci left: 1.084498e-01	ci right 1.098722e-01	k: 80778	n:740000
FAAH   740000 perm   349 sec   (2121 perm/sec)   p_kst 1.091595e-01   p_cons 1.509459e-03   p_joint 3.509459e-03

Joint ci ratio: 8.585306e-02	ci left: 2.652962e-03	ci right 2.892237e-03	k: 2078	n:750000
Cons ci ratio: 1.163190e-01	ci left: 1.424034e-03	ci right 1.601186e-03	k: 1133	n:750000
KS ci ratio: 1.293038e-02	ci left: 1.084591e-01	ci right 1.098719e-01	k: 81873	n:750000
FAAH   750000 perm   356 sec   (2105 perm/sec)   p_kst 1.091640e-01   p_cons 1.510667e-03   p_joint 2.770667e-03

Joint ci ratio: 8.534163e-02	ci left: 2.650245e-03	ci right 2.887780e-03	k: 2103	n:760000
Cons ci ratio: 1.158606e-01	ci left: 1.416794e-03	ci right 1.592304e-03	k: 1142	n:760000
KS ci ratio: 1.284544e-02	ci left: 1.084576e-01	ci right 1.098611e-01	k: 82960	n:760000
FAAH   760000 perm   364 sec   (2089 perm/sec)   p_kst 1.091579e-01   p_cons 1.502632e-03   p_joint 2.767105e-03

Joint ci ratio: 9.130103e-02	ci left: 2.279243e-03	ci right 2.498553e-03	k: 1838	n:770000
Cons ci ratio: 1.148103e-01	ci left: 1.424881e-03	ci right 1.599683e-03	k: 1163	n:770000
KS ci ratio: 1.276453e-02	ci left: 1.084200e-01	ci right 1.098141e-01	k: 84019	n:770000
FAAH   770000 perm   371 sec   (2073 perm/sec)   p_kst 1.091156e-01   p_cons 1.510390e-03   p_joint 2.387013e-03

Joint ci ratio: 9.078433e-02	ci left: 2.276332e-03	ci right 2.494056e-03	k: 1859	n:780000
Cons ci ratio: 1.142719e-01	ci left: 1.420311e-03	ci right 1.593681e-03	k: 1174	n:780000
KS ci ratio: 1.267686e-02	ci left: 1.085099e-01	ci right 1.098955e-01	k: 85177	n:780000
FAAH   780000 perm   379 sec   (2058 perm/sec)   p_kst 1.092013e-01   p_cons 1.505128e-03   p_joint 2.383333e-03

Joint ci ratio: 9.095742e-02	ci left: 2.238856e-03	ci right 2.453426e-03	k: 1852	n:790000
Cons ci ratio: 1.136451e-01	ci left: 1.418319e-03	ci right 1.590432e-03	k: 1187	n:790000
KS ci ratio: 1.259162e-02	ci left: 1.085875e-01	ci right 1.099647e-01	k: 86327	n:790000
FAAH   790000 perm   387 sec   (2042 perm/sec)   p_kst 1.092747e-01   p_cons 1.502532e-03   p_joint 2.344304e-03

Joint ci ratio: 9.056768e-02	ci left: 2.230416e-03	ci right 2.443213e-03	k: 1868	n:800000
Cons ci ratio: 1.129344e-01	ci left: 1.418809e-03	ci right 1.589833e-03	k: 1202	n:800000
KS ci ratio: 1.251354e-02	ci left: 1.085784e-01	ci right 1.099469e-01	k: 87409	n:800000
FAAH   800000 perm   395 sec   (2027 perm/sec)   p_kst 1.092613e-01   p_cons 1.502500e-03   p_joint 2.335000e-03

Joint ci ratio: 9.013498e-02	ci left: 2.224600e-03	ci right 2.435774e-03	k: 1886	n:810000
Cons ci ratio: 1.123755e-01	ci left: 1.415690e-03	ci right 1.585438e-03	k: 1214	n:810000
KS ci ratio: 1.243634e-02	ci left: 1.085782e-01	ci right 1.099382e-01	k: 88498	n:810000
FAAH   810000 perm   402 sec   (2013 perm/sec)   p_kst 1.092568e-01   p_cons 1.498765e-03   p_joint 2.328395e-03

Joint ci ratio: 8.961418e-02	ci left: 2.223697e-03	ci right 2.433502e-03	k: 1908	n:820000
Cons ci ratio: 1.118249e-01	ci left: 1.412649e-03	ci right 1.581148e-03	k: 1226	n:820000
KS ci ratio: 1.236195e-02	ci left: 1.085561e-01	ci right 1.099076e-01	k: 89569	n:820000
FAAH   820000 perm   410 sec   (1998 perm/sec)   p_kst 1.092305e-01   p_cons 1.495122e-03   p_joint 2.326829e-03

Joint ci ratio: 8.997042e-02	ci left: 2.179237e-03	ci right 2.385707e-03	k: 1893	n:830000
Cons ci ratio: 1.109687e-01	ci left: 1.417883e-03	ci right 1.585627e-03	k: 1245	n:830000
KS ci ratio: 1.228773e-02	ci left: 1.085526e-01	ci right 1.098959e-01	k: 90655	n:830000
FAAH   830000 perm   418 sec   (1983 perm/sec)   p_kst 1.092229e-01   p_cons 1.500000e-03   p_joint 2.280723e-03

Joint ci ratio: 8.933568e-02	ci left: 2.184716e-03	ci right 2.390169e-03	k: 1920	n:840000
Cons ci ratio: 1.100014e-01	ci left: 1.426471e-03	ci right 1.593664e-03	k: 1267	n:840000
KS ci ratio: 1.221036e-02	ci left: 1.086204e-01	ci right 1.099561e-01	k: 91801	n:840000
FAAH   840000 perm   427 sec   (1969 perm/sec)   p_kst 1.092869e-01   p_cons 1.508333e-03   p_joint 2.285714e-03

Joint ci ratio: 8.882853e-02	ci left: 2.184319e-03	ci right 2.388508e-03	k: 1942	n:850000
Cons ci ratio: 1.091861e-01	ci left: 1.431429e-03	ci right 1.597880e-03	k: 1286	n:850000
KS ci ratio: 1.213809e-02	ci left: 1.086281e-01	ci right 1.099558e-01	k: 92897	n:850000
FAAH   850000 perm   435 sec   (1955 perm/sec)   p_kst 1.092906e-01   p_cons 1.512941e-03   p_joint 2.284706e-03

Joint ci ratio: 9.745214e-02	ci left: 1.786371e-03	ci right 1.970498e-03	k: 1614	n:860000
Cons ci ratio: 1.086390e-01	ci left: 1.429489e-03	ci right 1.594828e-03	k: 1299	n:860000
KS ci ratio: 1.206479e-02	ci left: 1.086726e-01	ci right 1.099928e-01	k: 94025	n:860000
FAAH   860000 perm   443 sec   (1941 perm/sec)   p_kst 1.093314e-01   p_cons 1.510465e-03   p_joint 1.876744e-03

Joint ci ratio: 9.691361e-02	ci left: 1.786025e-03	ci right 1.969041e-03	k: 1632	n:870000
Cons ci ratio: 1.078944e-01	ci left: 1.433188e-03	ci right 1.597746e-03	k: 1317	n:870000
KS ci ratio: 1.199209e-02	ci left: 1.087276e-01	ci right 1.100405e-01	k: 95163	n:870000
FAAH   870000 perm   451 sec   (1928 perm/sec)   p_kst 1.093828e-01   p_cons 1.513793e-03   p_joint 1.875862e-03

Joint ci ratio: 9.676634e-02	ci left: 1.771273e-03	ci right 1.952486e-03	k: 1637	n:880000
Cons ci ratio: 1.072856e-01	ci left: 1.433488e-03	ci right 1.597094e-03	k: 1332	n:880000
KS ci ratio: 1.192284e-02	ci left: 1.087463e-01	ci right 1.100517e-01	k: 96270	n:880000
FAAH   880000 perm   460 sec   (1914 perm/sec)   p_kst 1.093977e-01   p_cons 1.513636e-03   p_joint 1.860227e-03

Joint ci ratio: 9.635569e-02	ci left: 1.766721e-03	ci right 1.946658e-03	k: 1651	n:890000
Cons ci ratio: 1.069256e-01	ci left: 1.427223e-03	ci right 1.589532e-03	k: 1341	n:890000
KS ci ratio: 1.185642e-02	ci left: 1.087377e-01	ci right 1.100357e-01	k: 97353	n:890000
FAAH   890000 perm   468 sec   (1901 perm/sec)   p_kst 1.093854e-01   p_cons 1.506742e-03   p_joint 1.855056e-03

Joint ci ratio: 7.933193e-02	ci left: 2.598198e-03	ci right 2.813912e-03	k: 2434	n:900000
Cons ci ratio: 1.062547e-01	ci left: 1.429750e-03	ci right 1.591263e-03	k: 1358	n:900000
KS ci ratio: 1.178834e-02	ci left: 1.087747e-01	ci right 1.100656e-01	k: 98477	n:900000
FAAH   900000 perm   477 sec   (1887 perm/sec)   p_kst 1.094189e-01   p_cons 1.508889e-03   p_joint 2.704444e-03

Joint ci ratio: 7.889573e-02	ci left: 2.598729e-03	ci right 2.813247e-03	k: 2461	n:910000
Cons ci ratio: 1.057888e-01	ci left: 1.426876e-03	ci right 1.587313e-03	k: 1370	n:910000
KS ci ratio: 1.172341e-02	ci left: 1.087780e-01	ci right 1.100618e-01	k: 99571	n:910000
FAAH   910000 perm   485 sec   (1874 perm/sec)   p_kst 1.094187e-01   p_cons 1.505495e-03   p_joint 2.704396e-03

Joint ci ratio: 7.917144e-02	ci left: 2.552367e-03	ci right 2.763827e-03	k: 2444	n:920000
Cons ci ratio: 1.050252e-01	ci left: 1.432533e-03	ci right 1.592371e-03	k: 1390	n:920000
KS ci ratio: 1.166096e-02	ci left: 1.087574e-01	ci right 1.100342e-01	k: 100643	n:920000
FAAH   920000 perm   494 sec   (1861 perm/sec)   p_kst 1.093946e-01   p_cons 1.510870e-03   p_joint 2.656522e-03

Joint ci ratio: 7.880182e-02	ci left: 2.549165e-03	ci right 2.759329e-03	k: 2467	n:930000
Cons ci ratio: 1.044263e-01	ci left: 1.433883e-03	ci right 1.592904e-03	k: 1406	n:930000
KS ci ratio: 1.159810e-02	ci left: 1.087609e-01	ci right 1.100308e-01	k: 101737	n:930000
FAAH   930000 perm   503 sec   (1848 perm/sec)   p_kst 1.093946e-01   p_cons 1.511828e-03   p_joint 2.652688e-03

Joint ci ratio: 7.837426e-02	ci left: 2.550205e-03	ci right 2.759262e-03	k: 2494	n:940000
Cons ci ratio: 1.042788e-01	ci left: 1.422772e-03	ci right 1.580325e-03	k: 1410	n:940000
KS ci ratio: 1.153611e-02	ci left: 1.087665e-01	ci right 1.100295e-01	k: 102833	n:940000
FAAH   940000 perm   512 sec   (1836 perm/sec)   p_kst 1.093968e-01   p_cons 1.500000e-03   p_joint 2.653191e-03

Joint ci ratio: 7.798459e-02	ci left: 2.549162e-03	ci right 2.757047e-03	k: 2519	n:950000
Cons ci ratio: 1.034387e-01	ci left: 1.431378e-03	ci right 1.588529e-03	k: 1433	n:950000
KS ci ratio: 1.147728e-02	ci left: 1.087352e-01	ci right 1.099914e-01	k: 103894	n:950000
FAAH   950000 perm   521 sec   (1824 perm/sec)   p_kst 1.093621e-01   p_cons 1.508421e-03   p_joint 2.651579e-03

Joint ci ratio: 8.001687e-02	ci left: 2.393943e-03	ci right 2.594495e-03	k: 2393	n:960000
Cons ci ratio: 1.029732e-01	ci left: 1.429660e-03	ci right 1.585873e-03	k: 1446	n:960000
KS ci ratio: 1.141750e-02	ci left: 1.087357e-01	ci right 1.099854e-01	k: 104985	n:960000
FAAH   960000 perm   530 sec   (1811 perm/sec)   p_kst 1.093594e-01   p_cons 1.506250e-03   p_joint 2.492708e-03

Joint ci ratio: 6.875223e-02	ci left: 3.225341e-03	ci right 3.455991e-03	k: 3239	n:970000
Cons ci ratio: 1.023384e-01	ci left: 1.433001e-03	ci right 1.588556e-03	k: 1464	n:970000
KS ci ratio: 1.135926e-02	ci left: 1.087260e-01	ci right 1.099691e-01	k: 106066	n:970000
FAAH   970000 perm   539 sec   (1799 perm/sec)   p_kst 1.093464e-01   p_cons 1.509278e-03   p_joint 3.339175e-03

Joint ci ratio: 6.852040e-02	ci left: 3.214493e-03	ci right 3.443560e-03	k: 3261	n:980000
Cons ci ratio: 1.018875e-01	ci left: 1.431305e-03	ci right 1.585951e-03	k: 1477	n:980000
KS ci ratio: 1.130189e-02	ci left: 1.087165e-01	ci right 1.099532e-01	k: 107147	n:980000
FAAH   980000 perm   548 sec   (1787 perm/sec)   p_kst 1.093337e-01   p_cons 1.507143e-03   p_joint 3.327551e-03

Joint ci ratio: 6.818680e-02	ci left: 3.213794e-03	ci right 3.441653e-03	k: 3293	n:990000
Cons ci ratio: 1.013404e-01	ci left: 1.432599e-03	ci right 1.586503e-03	k: 1493	n:990000
KS ci ratio: 1.124276e-02	ci left: 1.087525e-01	ci right 1.099831e-01	k: 108273	n:990000
FAAH   990000 perm   558 sec   (1775 perm/sec)   p_kst 1.093667e-01   p_cons 1.508081e-03   p_joint 3.326263e-03

Joint ci ratio: 6.781713e-02	ci left: 3.217044e-03	ci right 3.443848e-03	k: 3329	n:1000000
Cons ci ratio: 1.007352e-01	ci left: 1.435818e-03	ci right 1.589093e-03	k: 1511	n:1000000
KS ci ratio: 1.118685e-02	ci left: 1.087479e-01	ci right 1.099723e-01	k: 109359	n:1000000
FAAH   1000000 perm   567 sec   (1764 perm/sec)   p_kst 1.093590e-01   p_cons 1.511000e-03   p_joint 3.329000e-03

Joint ci ratio: 6.792065e-02	ci left: 3.175457e-03	ci right 3.399684e-03	k: 3319	n:1010000
Cons ci ratio: 1.002721e-01	ci left: 1.435115e-03	ci right 1.587569e-03	k: 1525	n:1010000
KS ci ratio: 1.112673e-02	ci left: 1.088314e-01	ci right 1.100501e-01	k: 110534	n:1010000
FAAH   1010000 perm   576 sec   (1752 perm/sec)   p_kst 1.094396e-01   p_cons 1.509901e-03   p_joint 3.286139e-03

Joint ci ratio: 6.763620e-02	ci left: 3.171310e-03	ci right 3.394270e-03	k: 3347	n:1020000
Cons ci ratio: 9.971814e-02	ci left: 1.437295e-03	ci right 1.589088e-03	k: 1542	n:1020000
KS ci ratio: 1.107213e-02	ci left: 1.088330e-01	ci right 1.100457e-01	k: 111627	n:1020000
FAAH   1020000 perm   586 sec   (1741 perm/sec)   p_kst 1.094382e-01   p_cons 1.511765e-03   p_joint 3.281373e-03

Outputting figure to mutsig2_images.part000000000059/FAAH.3_1800_1020000_0.10944_0.0015118_0.0032814.png
                gene_name: FAAH
               theta_stop: 0.100 
                    nperm: 1020000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0015 
      ci_cons_bounds_left: 0.0014 
     ci_cons_bounds_right: 0.0016 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0032 
    ci_joint_bounds_right: 0.0034 

Current progress: 70 percent done.
EXOC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
Cons ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
KS ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
EXOC6B   10000 perm   2 sec   (5851 perm/sec)   p_kst 3.696000e-01   p_cons 6.066000e-01   p_joint 7.130000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC6B.2_2524_10000_0.3696_0.6066_0.713.png
                gene_name: EXOC6B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 72 percent done.
EXOC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
KS ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
EXOC7   10000 perm   2 sec   (6047 perm/sec)   p_kst 8.862000e-01   p_cons 4.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOC7.2_2288_10000_0.8862_0.4775_1.png
                gene_name: EXOC7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
EXOC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
KS ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
EXOC8   10000 perm   2 sec   (6329 perm/sec)   p_kst 6.556000e-01   p_cons 2.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOC8.2_2182_10000_0.6556_0.2499_1.png
                gene_name: EXOC8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
EXOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
Cons ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
KS ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
EXOG   10000 perm   1 sec   (6763 perm/sec)   p_kst 1.475000e-01   p_cons 1.937000e-01   p_joint 9.232000e-01

Outputting figure to mutsig2_images.part000000000059/EXOG.2_1131_10000_0.1475_0.1937_0.9232.png
                gene_name: EXOG
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
EXOSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
EXOSC1   10000 perm   1 sec   (7058 perm/sec)   p_kst 7.855000e-01   p_cons 8.320000e-02   p_joint 7.949000e-01

Joint ci ratio: 1.424394e-02	ci left: 7.853989e-01	ci right 7.967164e-01	k: 15822	n:20000
Cons ci ratio: 9.271124e-02	ci left: 7.823353e-02	ci right 8.588850e-02	k: 1640	n:20000
KS ci ratio: 1.464166e-02	ci left: 7.760606e-01	ci right 7.875574e-01	k: 15637	n:20000
EXOSC1   20000 perm   3 sec   (6172 perm/sec)   p_kst 7.818500e-01   p_cons 8.200000e-02   p_joint 7.911000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC1.2_620_20000_0.78185_0.082_0.7911.png
                gene_name: EXOSC1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 80 percent done.
EXOSC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
Cons ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
KS ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
EXOSC9   10000 perm   2 sec   (6535 perm/sec)   p_kst 1.860000e-01   p_cons 2.738000e-01   p_joint 3.278000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC9.2_1423_10000_0.186_0.2738_0.3278.png
                gene_name: EXOSC9
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 82 percent done.
EZH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
EZH1   10000 perm   2 sec   (6248 perm/sec)   p_kst 8.355000e-01   p_cons 7.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EZH1.2_2320_10000_0.8355_0.7817_1.png
                gene_name: EZH1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
F11R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
Cons ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
F11R   10000 perm   1 sec   (6840 perm/sec)   p_kst 9.930000e-02   p_cons 2.960000e-01   p_joint 4.378000e-01

Joint ci ratio: 5.666099e-02	ci left: 1.875999e-01	ci right 1.985895e-01	k: 3861	n:20000
Cons ci ratio: 4.086103e-02	ci left: 3.086640e-01	ci right 3.215898e-01	k: 6302	n:20000
KS ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
F11R   20000 perm   3 sec   (6047 perm/sec)   p_kst 1.012500e-01   p_cons 3.151000e-01   p_joint 1.930500e-01

Outputting figure to mutsig2_images.part000000000059/F11R.2_940_20000_0.10125_0.3151_0.19305.png
                gene_name: F11R
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 86 percent done.
F2RL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
KS ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
F2RL3   10000 perm   1 sec   (6802 perm/sec)   p_kst 4.999000e-01   p_cons 6.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F2RL3.2_1166_10000_0.4999_0.6347_1.png
                gene_name: F2RL3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
KS ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
F7   10000 perm   2 sec   (6527 perm/sec)   p_kst 6.787000e-01   p_cons 4.824000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F7.2_1437_10000_0.6787_0.4824_1.png
                gene_name: F7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
FABP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
FABP3   10000 perm   1 sec   (7133 perm/sec)   p_kst 4.404000e-01   p_cons 1.922000e-01   p_joint 9.218000e-01

Outputting figure to mutsig2_images.part000000000059/FABP3.2_418_10000_0.4404_0.1922_0.9218.png
                gene_name: FABP3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 92 percent done.
FABP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
FABP9   10000 perm   1 sec   (7150 perm/sec)   p_kst 9.586000e-01   p_cons 4.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FABP9.2_414_10000_0.9586_0.4535_1.png
                gene_name: FABP9
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
FAIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
FAIM3   10000 perm   1 sec   (6943 perm/sec)   p_kst 4.317000e-01   p_cons 1.195000e-01   p_joint 3.571000e-01

Joint ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
Cons ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
KS ci ratio: 3.202808e-02	ci left: 4.213282e-01	ci right 4.350927e-01	k: 8564	n:20000
FAIM3   20000 perm   3 sec   (6143 perm/sec)   p_kst 4.282000e-01   p_cons 1.193500e-01   p_joint 1.142000e-01

Outputting figure to mutsig2_images.part000000000059/FAIM3.2_1205_20000_0.4282_0.11935_0.1142.png
                gene_name: FAIM3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 96 percent done.
FAM104A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
Cons ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
KS ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
FAM104A   10000 perm   1 sec   (7334 perm/sec)   p_kst 6.373000e-01   p_cons 6.030000e-01   p_joint 8.150000e-01

Outputting figure to mutsig2_images.part000000000059/FAM104A.2_640_10000_0.6373_0.603_0.815.png
                gene_name: FAM104A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 98 percent done.
FAM105B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
Cons ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
KS ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
FAM105B   10000 perm   1 sec   (6911 perm/sec)   p_kst 7.199000e-01   p_cons 2.577000e-01   p_joint 5.411000e-01

Outputting figure to mutsig2_images.part000000000059/FAM105B.2_1087_10000_0.7199_0.2577_0.5411.png
                gene_name: FAM105B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000059
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 59 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4421929: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000060> was used as the working directory.
Started at Wed Oct 24 17:43:32 2012
Results reported at Wed Oct 24 17:53:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000060.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000060.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 60  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000060.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    608.10 sec.
    Max Memory :      5425 MB
    Max Swap   :      7691 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
60
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 60
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 60: processing genes 5339 - 5428
Calculating significance of each gene.
Using projection method.
5339	FAM108B1	1
5340	FAM108C1	1
5341	FAM109A	1
5342	FAM109B	1
5343	FAM110A	3.371547e-01
5344	FAM110B	1
5345	FAM110C	1
5346	FAM111A	9.644534e-01
In gene FAM111B the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 2213    n = 1	mu =   3.35e-07
5347	FAM111B	3.914838e-01
5348	FAM113A	2.547914e-01
5349	FAM113B	8.188579e-01
5350	FAM114A1	2.095379e-01
5351	FAM114A2	8.858479e-02
5352	FAM115A	1.861347e-01
5353	FAM115C	9.385842e-01
5354	FAM116A	9.571964e-01
5355	FAM116B	1
5356	FAM117A	9.131660e-01
5357	FAM117B	1
5358	FAM118A	1
5359	FAM118B	5.863783e-01
5360	FAM119A	8.699555e-02
5361	FAM119B	6.203053e-01
5362	FAM120A	5.179195e-01
5363	FAM120AOS	4.481092e-01
5364	FAM120B	6.847118e-01
5365	FAM120C	9.399973e-01
5366	FAM122A	1
5367	FAM122B	1
5368	FAM122C	5.913570e-01
5369	FAM123A	7.687645e-01
5370	FAM123B	3.488799e-02
5371	FAM123C	8.471076e-01
5372	FAM124A	1
5373	FAM124B	8.779656e-02
5374	FAM125A	6.634662e-01
5375	FAM125B	8.550433e-01
5376	FAM126A	9.476891e-01
5377	FAM126B	7.008872e-01
5378	FAM127A	1
5379	FAM127B	1
5380	FAM127C	6.410224e-02
5381	FAM128A	5.817140e-02
5382	FAM128B	1
5383	FAM129A	9.748188e-01
5384	FAM129B	9.645978e-01
5385	FAM129C	9.745575e-01
5386	FAM131A	2.098753e-01
5387	FAM131B	1.255898e-01
5388	FAM131C	1
5389	FAM132A	4.959982e-01
5390	FAM133A	2.912793e-02
5391	FAM133B	1
5392	FAM134A	4.305114e-01
5393	FAM134B	4.986189e-01
5394	FAM134C	1
5395	FAM135A	1
5396	FAM135B	1.961114e-01
5397	FAM136A	3.660219e-01
5398	FAM136B	3.340879e-01
5399	FAM13A	9.929527e-01
5400	FAM13B	1
5401	FAM13C	1
5402	FAM149A	8.668632e-01
5403	FAM150A	1
5404	FAM150B	1
5405	FAM151A	9.569925e-01
5406	FAM151B	1
5407	FAM153A	4.129284e-01
5408	FAM153B	1.542564e-01
5409	FAM153C	2.451825e-01
5410	FAM154A	2.241180e-01
5411	FAM154B	1.044919e-01
5412	FAM155A	5.988314e-01
5413	FAM155B	6.901013e-01
5414	FAM158A	3.753294e-01
5415	FAM159A	1
5416	FAM160A2	4.765169e-01
5417	FAM160B1	3.309592e-01
5418	FAM160B2	9.075470e-01
5419	FAM161A	6.269564e-01
5420	FAM161B	9.911087e-01
5421	FAM162A	1
5422	FAM162B	5.493278e-01
5423	FAM163A	1
5424	FAM164A	5.865732e-01
5425	FAM164C	5.434332e-01
5426	FAM165B	1
5427	FAM166A	5.748190e-01
5428	FAM166B	6.202683e-01
Done

Running MutSig 2:
Scatter job 60: processing genes 5339 - 5428
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM135B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.759331e-02	ci left: 3.944612e-01	ci right 4.137947e-01	k: 4041	n:10000
Cons ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
KS ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
FAM135B   10000 perm   3 sec   (3620 perm/sec)   p_kst 7.207000e-01   p_cons 1.152000e-01   p_joint 4.041000e-01

Joint ci ratio: 3.696224e-02	ci left: 3.532438e-01	ci right 3.665969e-01	k: 7198	n:20000
Cons ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
KS ci ratio: 1.831421e-02	ci left: 6.896725e-01	ci right 7.024705e-01	k: 13922	n:20000
FAM135B   20000 perm   8 sec   (2502 perm/sec)   p_kst 6.961000e-01   p_cons 1.141500e-01   p_joint 3.599000e-01

Outputting figure to mutsig2_images.part000000000060/FAM135B.48_4297_20000_0.6961_0.11415_0.3599.png
                gene_name: FAM135B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 2 percent done.
FAM123B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KS ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
FAM123B   10000 perm   2 sec   (4981 perm/sec)   p_kst 4.060000e-02   p_cons 1.601000e-01   p_joint 4.190000e-02

Joint ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
Cons ci ratio: 6.766256e-02	ci left: 1.388162e-01	ci right 1.485876e-01	k: 2873	n:20000
KS ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
FAM123B   20000 perm   4 sec   (4594 perm/sec)   p_kst 4.025000e-02   p_cons 1.436500e-01   p_joint 5.905000e-02

Joint ci ratio: 8.971188e-02	ci left: 5.714289e-02	ci right 6.254274e-02	k: 1794	n:30000
Cons ci ratio: 5.504541e-02	ci left: 1.406052e-01	ci right 1.485971e-01	k: 4337	n:30000
KS ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
FAM123B   30000 perm   7 sec   (4437 perm/sec)   p_kst 4.050000e-02   p_cons 1.445667e-01   p_joint 5.980000e-02

Joint ci ratio: 9.068782e-02	ci left: 4.259770e-02	ci right 4.666873e-02	k: 1784	n:40000
Cons ci ratio: 4.738866e-02	ci left: 1.426024e-01	ci right 1.495491e-01	k: 5842	n:40000
KS ci ratio: 9.926255e-02	ci left: 3.565933e-02	ci right 3.940819e-02	k: 1500	n:40000
FAM123B   40000 perm   9 sec   (4313 perm/sec)   p_kst 3.750000e-02   p_cons 1.460500e-01   p_joint 4.460000e-02

Outputting figure to mutsig2_images.part000000000060/FAM123B.18_3412_40000_0.0375_0.14605_0.0446.png
                gene_name: FAM123B
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 4 percent done.
FAM123C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
Cons ci ratio: 5.892304e-02	ci left: 2.976695e-01	ci right 3.158432e-01	k: 3067	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
FAM123C   10000 perm   2 sec   (4793 perm/sec)   p_kst 4.880000e-01   p_cons 3.067000e-01   p_joint 4.859000e-01

Outputting figure to mutsig2_images.part000000000060/FAM123C.15_2590_10000_0.488_0.3067_0.4859.png
                gene_name: FAM123C
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 6 percent done.
FAM120B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
FAM120B   10000 perm   2 sec   (5721 perm/sec)   p_kst 9.710000e-02   p_cons 1.997000e-01   p_joint 1.353000e-01

Joint ci ratio: 8.030626e-02	ci left: 1.021590e-01	ci right 1.107558e-01	k: 2128	n:20000
Cons ci ratio: 5.371275e-02	ci left: 2.046201e-01	ci right 2.159643e-01	k: 4205	n:20000
KS ci ratio: 8.503271e-02	ci left: 9.195118e-02	ci right 1.001667e-01	k: 1920	n:20000
FAM120B   20000 perm   4 sec   (5181 perm/sec)   p_kst 9.600000e-02   p_cons 2.102500e-01   p_joint 1.064000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120B.9_2769_20000_0.096_0.21025_0.1064.png
                gene_name: FAM120B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 8 percent done.
FAM131B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
KS ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
FAM131B   10000 perm   2 sec   (5690 perm/sec)   p_kst 7.687000e-01   p_cons 1.721000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000060/FAM131B.9_1111_10000_0.7687_0.1721_0.3482.png
                gene_name: FAM131B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 10 percent done.
FAM120A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
Cons ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
FAM120A   10000 perm   2 sec   (4687 perm/sec)   p_kst 1.233000e-01   p_cons 2.072000e-01   p_joint 1.312000e-01

Joint ci ratio: 6.714503e-02	ci left: 1.406893e-01	ci right 1.505140e-01	k: 2911	n:20000
Cons ci ratio: 5.414501e-02	ci left: 2.019967e-01	ci right 2.132884e-01	k: 4152	n:20000
KS ci ratio: 7.486609e-02	ci left: 1.160187e-01	ci right 1.250920e-01	k: 2410	n:20000
FAM120A   20000 perm   5 sec   (4352 perm/sec)   p_kst 1.205000e-01   p_cons 2.076000e-01   p_joint 1.455500e-01

Outputting figure to mutsig2_images.part000000000060/FAM120A.8_3429_20000_0.1205_0.2076_0.14555.png
                gene_name: FAM120A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 12 percent done.
FAM13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
FAM13A   10000 perm   2 sec   (5231 perm/sec)   p_kst 2.337000e-01   p_cons 2.130000e-02   p_joint 6.430000e-02

Joint ci ratio: 1.069866e-01	ci left: 5.952524e-02	ci right 6.630252e-02	k: 1257	n:20000
Cons ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
KS ci ratio: 4.979615e-02	ci left: 2.306245e-01	ci right 2.424522e-01	k: 4730	n:20000
FAM13A   20000 perm   4 sec   (4777 perm/sec)   p_kst 2.365000e-01   p_cons 2.090000e-02   p_joint 6.285000e-02

Joint ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
Cons ci ratio: 1.425090e-01	ci left: 2.284446e-02	ci right 2.638176e-02	k: 737	n:30000
KS ci ratio: 4.042909e-02	ci left: 2.337526e-01	ci right 2.434314e-01	k: 7157	n:30000
FAM13A   30000 perm   7 sec   (4475 perm/sec)   p_kst 2.385667e-01   p_cons 2.456667e-02   p_joint 3.453333e-02

Joint ci ratio: 8.485446e-02	ci left: 4.849676e-02	ci right 5.281877e-02	k: 2025	n:40000
Cons ci ratio: 1.233527e-01	ci left: 2.310407e-02	ci right 2.616548e-02	k: 984	n:40000
KS ci ratio: 3.358090e-02	ci left: 2.498142e-01	ci right 2.583715e-01	k: 10163	n:40000
FAM13A   40000 perm   9 sec   (4378 perm/sec)   p_kst 2.540750e-01   p_cons 2.460000e-02   p_joint 5.062500e-02

Joint ci ratio: 6.753918e-02	ci left: 6.098421e-02	ci right 6.526668e-02	k: 3155	n:50000
Cons ci ratio: 1.097038e-01	ci left: 2.353237e-02	ci right 2.628317e-02	k: 1244	n:50000
KS ci ratio: 2.997244e-02	ci left: 2.510645e-01	ci right 2.587240e-01	k: 12744	n:50000
FAM13A   50000 perm   12 sec   (4308 perm/sec)   p_kst 2.548800e-01   p_cons 2.488000e-02   p_joint 6.310000e-02

Joint ci ratio: 6.161298e-02	ci left: 6.124945e-02	ci right 6.515959e-02	k: 3791	n:60000
Cons ci ratio: 1.002489e-01	ci left: 2.360285e-02	ci right 2.611006e-02	k: 1490	n:60000
KS ci ratio: 2.733699e-02	ci left: 2.517317e-01	ci right 2.587253e-01	k: 15313	n:60000
FAM13A   60000 perm   14 sec   (4248 perm/sec)   p_kst 2.552167e-01   p_cons 2.483333e-02   p_joint 6.318333e-02

Joint ci ratio: 5.157721e-02	ci left: 7.425910e-02	ci right 7.820468e-02	k: 5335	n:70000
Cons ci ratio: 9.277152e-02	ci left: 2.371638e-02	ci right 2.603752e-02	k: 1740	n:70000
KS ci ratio: 2.609482e-02	ci left: 2.405943e-01	ci right 2.469698e-01	k: 17064	n:70000
FAM13A   70000 perm   17 sec   (4181 perm/sec)   p_kst 2.437714e-01   p_cons 2.485714e-02   p_joint 7.621429e-02

Outputting figure to mutsig2_images.part000000000060/FAM13A.8_3201_70000_0.24377_0.024857_0.076214.png
                gene_name: FAM13A
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 14 percent done.
FAM160A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
Cons ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
KS ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
FAM160A2   10000 perm   2 sec   (4958 perm/sec)   p_kst 6.424000e-01   p_cons 8.663000e-01   p_joint 7.959000e-01

Outputting figure to mutsig2_images.part000000000060/FAM160A2.8_3005_10000_0.6424_0.8663_0.7959.png
                gene_name: FAM160A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 16 percent done.
FAM123A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
FAM123A   10000 perm   2 sec   (5286 perm/sec)   p_kst 7.101000e-01   p_cons 9.350000e-02   p_joint 2.812000e-01

Joint ci ratio: 5.025542e-02	ci left: 2.273536e-01	ci right 2.391241e-01	k: 4664	n:20000
Cons ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
KS ci ratio: 1.777264e-02	ci left: 7.022977e-01	ci right 7.149416e-01	k: 14173	n:20000
FAM123A   20000 perm   4 sec   (4896 perm/sec)   p_kst 7.086500e-01   p_cons 9.190000e-02   p_joint 2.332000e-01

Outputting figure to mutsig2_images.part000000000060/FAM123A.7_2020_20000_0.70865_0.0919_0.2332.png
                gene_name: FAM123A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
FAM113A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
KS ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
FAM113A   10000 perm   2 sec   (6123 perm/sec)   p_kst 7.142000e-01   p_cons 3.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM113A.6_1393_10000_0.7142_0.3992_1.png
                gene_name: FAM113A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
FAM114A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
Cons ci ratio: 3.101236e-02	ci left: 6.053805e-01	ci right 6.245524e-01	k: 6150	n:10000
KS ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
FAM114A2   10000 perm   2 sec   (6094 perm/sec)   p_kst 1.769000e-01   p_cons 6.150000e-01   p_joint 2.966000e-01

Outputting figure to mutsig2_images.part000000000060/FAM114A2.6_1570_10000_0.1769_0.615_0.2966.png
                gene_name: FAM114A2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 22 percent done.
FAM111B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
KS ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
FAM111B   10000 perm   2 sec   (5987 perm/sec)   p_kst 1.630000e-01   p_cons 6.839000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000060/FAM111B.5_2213_10000_0.163_0.6839_0.2488.png
                gene_name: FAM111B
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
FAM114A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
Cons ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
KS ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
FAM114A1   10000 perm   2 sec   (5679 perm/sec)   p_kst 2.305000e-01   p_cons 7.232000e-01   p_joint 3.014000e-01

Outputting figure to mutsig2_images.part000000000060/FAM114A1.5_1744_10000_0.2305_0.7232_0.3014.png
                gene_name: FAM114A1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
FAM129A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579881e-02	ci left: 8.533504e-01	ci right 8.670391e-01	k: 8603	n:10000
Cons ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
KS ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
FAM129A   10000 perm   2 sec   (5140 perm/sec)   p_kst 8.294000e-01   p_cons 5.320000e-01   p_joint 8.603000e-01

Outputting figure to mutsig2_images.part000000000060/FAM129A.5_2843_10000_0.8294_0.532_0.8603.png
                gene_name: FAM129A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 29 percent done.
FAM134A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
Cons ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
KS ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
FAM134A   10000 perm   2 sec   (6099 perm/sec)   p_kst 1.382000e-01   p_cons 5.531000e-01   p_joint 1.985000e-01

Outputting figure to mutsig2_images.part000000000060/FAM134A.5_1668_10000_0.1382_0.5531_0.1985.png
                gene_name: FAM134A
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 31 percent done.
FAM13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
Cons ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
KS ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
FAM13C   10000 perm   2 sec   (6004 perm/sec)   p_kst 3.985000e-01   p_cons 7.940000e-02   p_joint 1.995000e-01

Joint ci ratio: 5.724956e-02	ci left: 1.844351e-01	ci right 1.953552e-01	k: 3797	n:20000
Cons ci ratio: 9.289637e-02	ci left: 7.793991e-02	ci right 8.558220e-02	k: 1634	n:20000
KS ci ratio: 3.503330e-02	ci left: 3.781986e-01	ci right 3.917349e-01	k: 7699	n:20000
FAM13C   20000 perm   4 sec   (5320 perm/sec)   p_kst 3.849500e-01   p_cons 8.170000e-02   p_joint 1.898500e-01

Outputting figure to mutsig2_images.part000000000060/FAM13C.5_1814_20000_0.38495_0.0817_0.18985.png
                gene_name: FAM13C
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
FAM154A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
FAM154A   10000 perm   2 sec   (6166 perm/sec)   p_kst 7.735000e-01   p_cons 8.113000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM154A.5_1441_10000_0.7735_0.8113_1.png
                gene_name: FAM154A
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
FAM160B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
Cons ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
KS ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
FAM160B1   10000 perm   2 sec   (5469 perm/sec)   p_kst 1.927000e-01   p_cons 9.900000e-02   p_joint 1.235000e-01

Joint ci ratio: 6.531773e-02	ci left: 1.475927e-01	ci right 1.576085e-01	k: 3051	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 5.659743e-02	ci left: 1.879460e-01	ci right 1.989432e-01	k: 3868	n:20000
FAM160B1   20000 perm   4 sec   (4966 perm/sec)   p_kst 1.934000e-01   p_cons 9.090000e-02   p_joint 1.525500e-01

Outputting figure to mutsig2_images.part000000000060/FAM160B1.5_2395_20000_0.1934_0.0909_0.15255.png
                gene_name: FAM160B1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
FAM133A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
FAM133A   10000 perm   1 sec   (7006 perm/sec)   p_kst 8.013000e-01   p_cons 1.863000e-01   p_joint 6.039000e-01

Outputting figure to mutsig2_images.part000000000060/FAM133A.4_751_10000_0.8013_0.1863_0.6039.png
                gene_name: FAM133A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 39 percent done.
FAM134B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
FAM134B   10000 perm   2 sec   (6231 perm/sec)   p_kst 5.637000e-01   p_cons 1.040000e-02   p_joint 3.910000e-02

Joint ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
Cons ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
KS ci ratio: 2.536846e-02	ci left: 5.372165e-01	ci right 5.510706e-01	k: 10883	n:20000
FAM134B   20000 perm   4 sec   (5631 perm/sec)   p_kst 5.441500e-01   p_cons 9.050000e-03   p_joint 4.985000e-02

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 2.357281e-01	ci left: 8.056540e-03	ci right 1.024011e-02	k: 273	n:30000
KS ci ratio: 2.090160e-02	ci left: 5.340063e-01	ci right 5.453194e-01	k: 16190	n:30000
FAM134B   30000 perm   6 sec   (5396 perm/sec)   p_kst 5.396667e-01   p_cons 9.100000e-03   p_joint 7.740000e-02

Joint ci ratio: 7.403216e-02	ci left: 6.307000e-02	ci right 6.794331e-02	k: 2619	n:40000
Cons ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
KS ci ratio: 1.799492e-02	ci left: 5.377025e-01	ci right 5.474914e-01	k: 21704	n:40000
FAM134B   40000 perm   8 sec   (5250 perm/sec)   p_kst 5.426000e-01   p_cons 9.800000e-03   p_joint 6.547500e-02

Joint ci ratio: 8.096677e-02	ci left: 4.296403e-02	ci right 4.660906e-02	k: 2238	n:50000
Cons ci ratio: 1.685656e-01	ci left: 9.797512e-03	ci right 1.161997e-02	k: 534	n:50000
KS ci ratio: 1.612770e-02	ci left: 5.372203e-01	ci right 5.459749e-01	k: 27080	n:50000
FAM134B   50000 perm   10 sec   (5114 perm/sec)   p_kst 5.416000e-01   p_cons 1.068000e-02   p_joint 4.476000e-02

Joint ci ratio: 7.220964e-02	ci left: 4.512362e-02	ci right 4.852039e-02	k: 2808	n:60000
Cons ci ratio: 1.541217e-01	ci left: 9.844064e-03	ci right 1.150378e-02	k: 639	n:60000
KS ci ratio: 1.473691e-02	ci left: 5.371192e-01	ci right 5.451101e-01	k: 32467	n:60000
FAM134B   60000 perm   12 sec   (4998 perm/sec)   p_kst 5.411167e-01   p_cons 1.065000e-02   p_joint 4.680000e-02

Joint ci ratio: 6.573677e-02	ci left: 4.675147e-02	ci right 4.994325e-02	k: 3383	n:70000
Cons ci ratio: 1.434353e-01	ci left: 9.799438e-03	ci right 1.132726e-02	k: 738	n:70000
KS ci ratio: 1.361639e-02	ci left: 5.384146e-01	ci right 5.458104e-01	k: 37948	n:70000
FAM134B   70000 perm   14 sec   (4893 perm/sec)   p_kst 5.421143e-01   p_cons 1.054286e-02   p_joint 4.832857e-02

Joint ci ratio: 6.837596e-02	ci left: 3.811155e-02	ci right 4.082198e-02	k: 3156	n:80000
Cons ci ratio: 1.344592e-01	ci left: 9.805218e-03	ci right 1.123061e-02	k: 840	n:80000
KS ci ratio: 1.274410e-02	ci left: 5.383772e-01	ci right 5.452948e-01	k: 43347	n:80000
FAM134B   80000 perm   17 sec   (4777 perm/sec)   p_kst 5.418375e-01   p_cons 1.050000e-02   p_joint 3.945000e-02

Joint ci ratio: 6.957790e-02	ci left: 3.288010e-02	ci right 3.526117e-02	k: 3065	n:90000
Cons ci ratio: 1.266427e-01	ci left: 9.865851e-03	ci right 1.121042e-02	k: 947	n:90000
KS ci ratio: 1.198932e-02	ci left: 5.396497e-01	ci right 5.461698e-01	k: 48862	n:90000
FAM134B   90000 perm   19 sec   (4656 perm/sec)   p_kst 5.429111e-01   p_cons 1.052222e-02   p_joint 3.405556e-02

Joint ci ratio: 5.444714e-02	ci left: 4.793666e-02	ci right 5.062956e-02	k: 4927	n:100000
Cons ci ratio: 1.204524e-01	ci left: 9.848366e-03	ci right 1.112027e-02	k: 1047	n:100000
KS ci ratio: 1.137479e-02	ci left: 5.397862e-01	ci right 5.459713e-01	k: 54288	n:100000
FAM134B   100000 perm   22 sec   (4574 perm/sec)   p_kst 5.428800e-01   p_cons 1.047000e-02   p_joint 4.927000e-02

Joint ci ratio: 5.060516e-02	ci left: 5.041676e-02	ci right 5.304330e-02	k: 5689	n:110000
Cons ci ratio: 1.144363e-01	ci left: 9.950195e-03	ci right 1.116673e-02	k: 1160	n:110000
KS ci ratio: 1.083171e-02	ci left: 5.405599e-01	ci right 5.464560e-01	k: 59786	n:110000
FAM134B   110000 perm   25 sec   (4482 perm/sec)   p_kst 5.435091e-01   p_cons 1.054545e-02   p_joint 5.171818e-02

Joint ci ratio: 5.742906e-02	ci left: 3.630062e-02	ci right 3.845515e-02	k: 4484	n:120000
Cons ci ratio: 1.160103e-01	ci left: 8.877929e-03	ci right 9.979307e-03	k: 1130	n:120000
KS ci ratio: 1.036590e-02	ci left: 5.409100e-01	ci right 5.465545e-01	k: 65248	n:120000
FAM134B   120000 perm   27 sec   (4405 perm/sec)   p_kst 5.437333e-01   p_cons 9.416667e-03   p_joint 3.736667e-02

Joint ci ratio: 5.451938e-02	ci left: 3.720246e-02	ci right 3.929512e-02	k: 4971	n:130000
Cons ci ratio: 1.118863e-01	ci left: 8.830212e-03	ci right 9.884156e-03	k: 1215	n:130000
KS ci ratio: 9.960222e-03	ci left: 5.409722e-01	ci right 5.463950e-01	k: 70679	n:130000
FAM134B   130000 perm   30 sec   (4343 perm/sec)   p_kst 5.436846e-01   p_cons 9.346154e-03   p_joint 3.823846e-02

Joint ci ratio: 5.501109e-02	ci left: 3.403634e-02	ci right 3.596869e-02	k: 4899	n:140000
Cons ci ratio: 1.080055e-01	ci left: 8.817713e-03	ci right 9.831337e-03	k: 1304	n:140000
KS ci ratio: 9.599277e-03	ci left: 5.410007e-01	ci right 5.462261e-01	k: 76106	n:140000
FAM134B   140000 perm   33 sec   (4276 perm/sec)   p_kst 5.436143e-01   p_cons 9.314286e-03   p_joint 3.499286e-02

Joint ci ratio: 5.561367e-02	ci left: 3.116767e-02	ci right 3.295714e-02	k: 4808	n:150000
Cons ci ratio: 1.040138e-01	ci left: 8.891856e-03	ci right 9.873915e-03	k: 1406	n:150000
KS ci ratio: 9.266209e-03	ci left: 5.414954e-01	ci right 5.465429e-01	k: 81603	n:150000
FAM134B   150000 perm   36 sec   (4213 perm/sec)   p_kst 5.440200e-01   p_cons 9.373333e-03   p_joint 3.205333e-02

Joint ci ratio: 4.529783e-02	ci left: 4.369878e-02	ci right 4.573026e-02	k: 7153	n:160000
Cons ci ratio: 1.013538e-01	ci left: 8.792803e-03	ci right 9.737607e-03	k: 1481	n:160000
KS ci ratio: 9.076594e-03	ci left: 5.358159e-01	ci right 5.407077e-01	k: 86122	n:160000
FAM134B   160000 perm   39 sec   (4146 perm/sec)   p_kst 5.382625e-01   p_cons 9.256250e-03   p_joint 4.470625e-02

Joint ci ratio: 4.631102e-02	ci left: 3.950384e-02	ci right 4.138246e-02	k: 6874	n:170000
Cons ci ratio: 9.825286e-02	ci left: 8.820461e-03	ci right 9.737567e-03	k: 1576	n:170000
KS ci ratio: 8.800242e-03	ci left: 5.361914e-01	ci right 5.409367e-01	k: 91556	n:170000
FAM134B   170000 perm   42 sec   (4084 perm/sec)   p_kst 5.385647e-01   p_cons 9.270588e-03   p_joint 4.043529e-02

Outputting figure to mutsig2_images.part000000000060/FAM134B.4_1569_170000_0.53856_0.0092706_0.040435.png
                gene_name: FAM134B
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.041 

Current progress: 41 percent done.
FAM135A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
FAM135A   10000 perm   2 sec   (5269 perm/sec)   p_kst 6.810000e-02   p_cons 7.067000e-01   p_joint 1.743000e-01

Joint ci ratio: 6.100856e-02	ci left: 1.658544e-01	ci right 1.763414e-01	k: 3421	n:20000
Cons ci ratio: 1.745035e-02	ci left: 7.098453e-01	ci right 7.223918e-01	k: 14323	n:20000
KS ci ratio: 1.001491e-01	ci left: 6.757588e-02	ci right 7.474940e-02	k: 1422	n:20000
FAM135A   20000 perm   4 sec   (4764 perm/sec)   p_kst 7.110000e-02   p_cons 7.161500e-01   p_joint 1.710500e-01

Joint ci ratio: 6.444105e-02	ci left: 1.062506e-01	ci right 1.133585e-01	k: 3293	n:30000
Cons ci ratio: 1.463274e-02	ci left: 7.000041e-01	ci right 7.103561e-01	k: 21156	n:30000
KS ci ratio: 8.188564e-02	ci left: 6.805338e-02	ci right 7.389670e-02	k: 2128	n:30000
FAM135A   30000 perm   7 sec   (4583 perm/sec)   p_kst 7.093333e-02   p_cons 7.052000e-01   p_joint 1.097667e-01

Outputting figure to mutsig2_images.part000000000060/FAM135A.4_4706_30000_0.070933_0.7052_0.10977.png
                gene_name: FAM135A
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 43 percent done.
FAM149A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
Cons ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
KS ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
FAM149A   10000 perm   2 sec   (6261 perm/sec)   p_kst 3.719000e-01   p_cons 4.507000e-01   p_joint 6.508000e-01

Outputting figure to mutsig2_images.part000000000060/FAM149A.4_1493_10000_0.3719_0.4507_0.6508.png
                gene_name: FAM149A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 45 percent done.
FAM153B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
Cons ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
KS ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
FAM153B   10000 perm   2 sec   (6316 perm/sec)   p_kst 4.500000e-03   p_cons 8.589000e-01   p_joint 1.960000e-02

Joint ci ratio: 1.517155e-01	ci left: 2.984481e-02	ci right 3.479239e-02	k: 645	n:20000
Cons ci ratio: 1.063032e-02	ci left: 8.670877e-01	ci right 8.764040e-01	k: 17436	n:20000
KS ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
FAM153B   20000 perm   4 sec   (5692 perm/sec)   p_kst 4.450000e-03   p_cons 8.718000e-01   p_joint 3.225000e-02

Joint ci ratio: 1.210024e-01	ci left: 3.175129e-02	ci right 3.587297e-02	k: 1013	n:30000
Cons ci ratio: 8.743938e-03	ci left: 8.662769e-01	ci right 8.739179e-01	k: 26104	n:30000
KS ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
FAM153B   30000 perm   5 sec   (5458 perm/sec)   p_kst 4.433333e-03   p_cons 8.701333e-01   p_joint 3.376667e-02

Joint ci ratio: 1.585585e-01	ci left: 1.385564e-02	ci right 1.626552e-02	k: 601	n:40000
Cons ci ratio: 7.508861e-03	ci left: 8.687117e-01	ci right 8.752842e-01	k: 34881	n:40000
KS ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
FAM153B   40000 perm   8 sec   (5317 perm/sec)   p_kst 4.275000e-03   p_cons 8.720250e-01   p_joint 1.502500e-02

Joint ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
Cons ci ratio: 7.086914e-03	ci left: 8.564635e-01	ci right 8.625747e-01	k: 42977	n:50000
KS ci ratio: 2.680186e-01	ci left: 3.689404e-03	ci right 4.849313e-03	k: 212	n:50000
FAM153B   50000 perm   10 sec   (5188 perm/sec)   p_kst 4.240000e-03   p_cons 8.595400e-01   p_joint 1.402000e-02

Joint ci ratio: 1.366299e-01	ci left: 1.260796e-02	ci right 1.447286e-02	k: 811	n:60000
Cons ci ratio: 6.452161e-03	ci left: 8.573827e-01	ci right 8.629491e-01	k: 51611	n:60000
KS ci ratio: 2.469081e-01	ci left: 3.667021e-03	ci right 4.715164e-03	k: 250	n:60000
FAM153B   60000 perm   12 sec   (5079 perm/sec)   p_kst 4.166667e-03   p_cons 8.601833e-01   p_joint 1.351667e-02

Joint ci ratio: 1.310829e-01	ci left: 1.178682e-02	ci right 1.345394e-02	k: 882	n:70000
Cons ci ratio: 5.987288e-03	ci left: 8.570332e-01	ci right 8.621941e-01	k: 60174	n:70000
KS ci ratio: 2.321352e-01	ci left: 3.586301e-03	ci right 4.541245e-03	k: 283	n:70000
FAM153B   70000 perm   14 sec   (4976 perm/sec)   p_kst 4.042857e-03   p_cons 8.596286e-01   p_joint 1.260000e-02

Joint ci ratio: 1.335000e-01	ci left: 9.950239e-03	ci right 1.138558e-02	k: 852	n:80000
Cons ci ratio: 5.598633e-03	ci left: 8.572867e-01	ci right 8.621122e-01	k: 68777	n:80000
KS ci ratio: 2.127677e-01	ci left: 3.775506e-03	ci right 4.686025e-03	k: 337	n:80000
FAM153B   80000 perm   16 sec   (4880 perm/sec)   p_kst 4.212500e-03   p_cons 8.597125e-01   p_joint 1.065000e-02

Joint ci ratio: 1.118377e-01	ci left: 1.271299e-02	ci right 1.422972e-02	k: 1211	n:90000
Cons ci ratio: 5.001356e-03	ci left: 8.700236e-01	ci right 8.743968e-01	k: 78500	n:90000
KS ci ratio: 1.965525e-01	ci left: 3.967507e-03	ci right 4.842688e-03	k: 395	n:90000
FAM153B   90000 perm   19 sec   (4784 perm/sec)   p_kst 4.388889e-03   p_cons 8.722222e-01   p_joint 1.345556e-02

Joint ci ratio: 8.914386e-02	ci left: 1.812367e-02	ci right 1.982439e-02	k: 1896	n:100000
Cons ci ratio: 4.754739e-03	ci left: 8.696618e-01	ci right 8.738166e-01	k: 87175	n:100000
KS ci ratio: 1.790550e-01	ci left: 4.342822e-03	ci right 5.206288e-03	k: 476	n:100000
FAM153B   100000 perm   21 sec   (4697 perm/sec)   p_kst 4.760000e-03   p_cons 8.717500e-01   p_joint 1.896000e-02

Joint ci ratio: 8.073496e-02	ci left: 2.013404e-02	ci right 2.183680e-02	k: 2307	n:110000
Cons ci ratio: 4.537973e-03	ci left: 8.695355e-01	ci right 8.734994e-01	k: 95868	n:110000
KS ci ratio: 1.730066e-01	ci left: 4.243475e-03	ci right 5.055709e-03	k: 510	n:110000
FAM153B   110000 perm   24 sec   (4577 perm/sec)   p_kst 4.636364e-03   p_cons 8.715273e-01   p_joint 2.097273e-02

Joint ci ratio: 8.221658e-02	ci left: 1.782672e-02	ci right 1.936333e-02	k: 2230	n:120000
Cons ci ratio: 4.346756e-03	ci left: 8.695180e-01	ci right 8.733140e-01	k: 104571	n:120000
KS ci ratio: 1.683093e-01	ci left: 4.121175e-03	ci right 4.886408e-03	k: 539	n:120000
FAM153B   120000 perm   27 sec   (4495 perm/sec)   p_kst 4.491667e-03   p_cons 8.714250e-01   p_joint 1.858333e-02

Joint ci ratio: 7.325190e-02	ci left: 2.076371e-02	ci right 2.235004e-02	k: 2801	n:130000
Cons ci ratio: 4.184856e-03	ci left: 8.691271e-01	ci right 8.727795e-01	k: 113225	n:130000
KS ci ratio: 1.619847e-01	ci left: 4.121263e-03	ci right 4.854956e-03	k: 582	n:130000
FAM153B   130000 perm   29 sec   (4412 perm/sec)   p_kst 4.476923e-03   p_cons 8.709615e-01   p_joint 2.154615e-02

Joint ci ratio: 6.676904e-02	ci left: 2.322567e-02	ci right 2.483698e-02	k: 3363	n:140000
Cons ci ratio: 4.031293e-03	ci left: 8.692688e-01	ci right 8.727872e-01	k: 121945	n:140000
KS ci ratio: 1.567011e-01	ci left: 4.101206e-03	ci right 4.805275e-03	k: 622	n:140000
FAM153B   140000 perm   32 sec   (4338 perm/sec)   p_kst 4.442857e-03   p_cons 8.710357e-01   p_joint 2.402143e-02

Joint ci ratio: 6.703819e-02	ci left: 2.153900e-02	ci right 2.303954e-02	k: 3342	n:150000
Cons ci ratio: 3.897179e-03	ci left: 8.691792e-01	ci right 8.725798e-01	k: 130633	n:150000
KS ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
FAM153B   150000 perm   35 sec   (4267 perm/sec)   p_kst 4.446667e-03   p_cons 8.708867e-01   p_joint 2.228000e-02

Joint ci ratio: 6.942338e-02	ci left: 1.885878e-02	ci right 2.022121e-02	k: 3125	n:160000
Cons ci ratio: 3.771942e-03	ci left: 8.693226e-01	ci right 8.726140e-01	k: 139356	n:160000
KS ci ratio: 1.465805e-01	ci left: 4.123723e-03	ci right 4.781932e-03	k: 711	n:160000
FAM153B   160000 perm   38 sec   (4200 perm/sec)   p_kst 4.443750e-03   p_cons 8.709750e-01   p_joint 1.953125e-02

Joint ci ratio: 7.558173e-02	ci left: 1.498739e-02	ci right 1.617039e-02	k: 2647	n:170000
Cons ci ratio: 3.660444e-03	ci left: 8.693027e-01	ci right 8.724964e-01	k: 148054	n:170000
KS ci ratio: 1.458814e-01	ci left: 3.920791e-03	ci right 4.543362e-03	k: 718	n:170000
FAM153B   170000 perm   41 sec   (4135 perm/sec)   p_kst 4.223529e-03   p_cons 8.709059e-01   p_joint 1.557059e-02

Joint ci ratio: 7.971720e-02	ci left: 1.272684e-02	ci right 1.378892e-02	k: 2385	n:180000
Cons ci ratio: 3.550633e-03	ci left: 8.697722e-01	ci right 8.728714e-01	k: 156839	n:180000
KS ci ratio: 1.454929e-01	ci left: 3.724354e-03	ci right 4.314019e-03	k: 722	n:180000
FAM153B   180000 perm   44 sec   (4076 perm/sec)   p_kst 4.011111e-03   p_cons 8.713278e-01   p_joint 1.325000e-02

Joint ci ratio: 8.136664e-02	ci left: 1.157711e-02	ci right 1.256418e-02	k: 2292	n:190000
Cons ci ratio: 3.453763e-03	ci left: 8.699552e-01	ci right 8.729703e-01	k: 165579	n:190000
KS ci ratio: 1.414419e-01	ci left: 3.741456e-03	ci right 4.315945e-03	k: 764	n:190000
FAM153B   190000 perm   47 sec   (4006 perm/sec)   p_kst 4.021053e-03   p_cons 8.714684e-01   p_joint 1.206316e-02

Joint ci ratio: 8.077019e-02	ci left: 1.116961e-02	ci right 1.211462e-02	k: 2327	n:200000
Cons ci ratio: 3.365084e-03	ci left: 8.700757e-01	ci right 8.730135e-01	k: 174310	n:200000
KS ci ratio: 1.376259e-01	ci left: 3.761881e-03	ci right 4.322645e-03	k: 807	n:200000
FAM153B   200000 perm   51 sec   (3951 perm/sec)   p_kst 4.035000e-03   p_cons 8.715500e-01   p_joint 1.163500e-02

Joint ci ratio: 8.128862e-02	ci left: 1.050695e-02	ci right 1.140186e-02	k: 2299	n:210000
Cons ci ratio: 3.284159e-03	ci left: 8.700995e-01	ci right 8.729664e-01	k: 183023	n:210000
KS ci ratio: 1.346602e-01	ci left: 3.748331e-03	ci right 4.294071e-03	k: 843	n:210000
FAM153B   210000 perm   54 sec   (3897 perm/sec)   p_kst 4.014286e-03   p_cons 8.715381e-01   p_joint 1.094762e-02

Joint ci ratio: 7.160131e-02	ci left: 1.295940e-02	ci right 1.392621e-02	k: 2956	n:220000
Cons ci ratio: 3.208153e-03	ci left: 8.701675e-01	ci right 8.729681e-01	k: 191746	n:220000
KS ci ratio: 1.306908e-01	ci left: 3.806479e-03	ci right 4.343080e-03	k: 895	n:220000
FAM153B   220000 perm   57 sec   (3847 perm/sec)   p_kst 4.068182e-03   p_cons 8.715727e-01   p_joint 1.343636e-02

Joint ci ratio: 7.183199e-02	ci left: 1.232322e-02	ci right 1.324564e-02	k: 2939	n:230000
Cons ci ratio: 3.137557e-03	ci left: 8.702041e-01	ci right 8.729430e-01	k: 200463	n:230000
KS ci ratio: 1.286990e-01	ci left: 3.758763e-03	ci right 4.279945e-03	k: 923	n:230000
FAM153B   230000 perm   61 sec   (3798 perm/sec)   p_kst 4.013043e-03   p_cons 8.715783e-01   p_joint 1.277826e-02

Joint ci ratio: 6.941777e-02	ci left: 1.265710e-02	ci right 1.357139e-02	k: 3146	n:240000
Cons ci ratio: 3.069024e-03	ci left: 8.704141e-01	ci right 8.730936e-01	k: 209222	n:240000
KS ci ratio: 1.263962e-01	ci left: 3.739292e-03	ci right 4.247802e-03	k: 957	n:240000
FAM153B   240000 perm   64 sec   (3750 perm/sec)   p_kst 3.987500e-03   p_cons 8.717583e-01   p_joint 1.310833e-02

Joint ci ratio: 6.615003e-02	ci left: 1.339356e-02	ci right 1.431376e-02	k: 3462	n:250000
Cons ci ratio: 3.005703e-03	ci left: 8.705395e-01	ci right 8.731639e-01	k: 217964	n:250000
KS ci ratio: 1.235888e-01	ci left: 3.760220e-03	ci right 4.259387e-03	k: 1001	n:250000
FAM153B   250000 perm   68 sec   (3700 perm/sec)   p_kst 4.004000e-03   p_cons 8.718560e-01   p_joint 1.384800e-02

Joint ci ratio: 6.533167e-02	ci left: 1.321128e-02	ci right 1.410730e-02	k: 3550	n:260000
Cons ci ratio: 2.946245e-03	ci left: 8.706480e-01	ci right 8.732207e-01	k: 226704	n:260000
KS ci ratio: 1.209606e-01	ci left: 3.779653e-03	ci right 4.269966e-03	k: 1045	n:260000
FAM153B   260000 perm   71 sec   (3652 perm/sec)   p_kst 4.019231e-03   p_cons 8.719385e-01   p_joint 1.365385e-02

Joint ci ratio: 6.491448e-02	ci left: 1.289314e-02	ci right 1.376179e-02	k: 3597	n:270000
Cons ci ratio: 2.891859e-03	ci left: 8.706187e-01	ci right 8.731437e-01	k: 235409	n:270000
KS ci ratio: 1.192091e-01	ci left: 3.751029e-03	ci right 4.230085e-03	k: 1076	n:270000
FAM153B   270000 perm   75 sec   (3605 perm/sec)   p_kst 3.985185e-03   p_cons 8.718852e-01   p_joint 1.332222e-02

Joint ci ratio: 6.385985e-02	ci left: 1.285434e-02	ci right 1.370578e-02	k: 3717	n:280000
Cons ci ratio: 2.840423e-03	ci left: 8.705884e-01	ci right 8.730682e-01	k: 244113	n:280000
KS ci ratio: 1.174252e-01	ci left: 3.731430e-03	ci right 4.200357e-03	k: 1109	n:280000
FAM153B   280000 perm   79 sec   (3561 perm/sec)   p_kst 3.960714e-03   p_cons 8.718321e-01   p_joint 1.327500e-02

Joint ci ratio: 6.413730e-02	ci left: 1.230918e-02	ci right 1.312819e-02	k: 3687	n:290000
Cons ci ratio: 2.791292e-03	ci left: 8.705882e-01	ci right 8.730251e-01	k: 252825	n:290000
KS ci ratio: 1.149143e-01	ci left: 3.766820e-03	ci right 4.229386e-03	k: 1158	n:290000
FAM153B   290000 perm   82 sec   (3518 perm/sec)   p_kst 3.993103e-03   p_cons 8.718103e-01   p_joint 1.271379e-02

Joint ci ratio: 5.899543e-02	ci left: 1.407527e-02	ci right 1.493415e-02	k: 4350	n:300000
Cons ci ratio: 2.744298e-03	ci left: 8.706152e-01	ci right 8.730110e-01	k: 261545	n:300000
KS ci ratio: 1.128395e-01	ci left: 3.780512e-03	ci right 4.235819e-03	k: 1201	n:300000
FAM153B   300000 perm   86 sec   (3475 perm/sec)   p_kst 4.003333e-03   p_cons 8.718167e-01   p_joint 1.450000e-02

Joint ci ratio: 5.890654e-02	ci left: 1.366882e-02	ci right 1.450159e-02	k: 4365	n:310000
Cons ci ratio: 2.699367e-03	ci left: 8.706602e-01	ci right 8.730168e-01	k: 270271	n:310000
KS ci ratio: 1.109180e-01	ci left: 3.790253e-03	ci right 4.238452e-03	k: 1243	n:310000
FAM153B   310000 perm   90 sec   (3433 perm/sec)   p_kst 4.009677e-03   p_cons 8.718419e-01   p_joint 1.408065e-02

Joint ci ratio: 5.975783e-02	ci left: 1.287207e-02	ci right 1.366803e-02	k: 4245	n:320000
Cons ci ratio: 2.657241e-03	ci left: 8.706462e-01	ci right 8.729658e-01	k: 278979	n:320000
KS ci ratio: 1.094337e-01	ci left: 3.775128e-03	ci right 4.215179e-03	k: 1277	n:320000
FAM153B   320000 perm   94 sec   (3396 perm/sec)   p_kst 3.990625e-03   p_cons 8.718094e-01   p_joint 1.326562e-02

Joint ci ratio: 6.013694e-02	ci left: 1.232968e-02	ci right 1.309710e-02	k: 4194	n:330000
Cons ci ratio: 2.616070e-03	ci left: 8.707154e-01	ci right 8.729992e-01	k: 287714	n:330000
KS ci ratio: 1.077193e-01	ci left: 3.781599e-03	ci right 4.215061e-03	k: 1318	n:330000
FAM153B   330000 perm   98 sec   (3356 perm/sec)   p_kst 3.993939e-03   p_cons 8.718606e-01   p_joint 1.270909e-02

Joint ci ratio: 5.386965e-02	ci left: 1.492201e-02	ci right 1.575099e-02	k: 5213	n:340000
Cons ci ratio: 2.578247e-03	ci left: 8.706510e-01	ci right 8.729015e-01	k: 296405	n:340000
KS ci ratio: 1.061221e-01	ci left: 3.784877e-03	ci right 4.211880e-03	k: 1358	n:340000
FAM153B   340000 perm   102 sec   (3318 perm/sec)   p_kst 3.994118e-03   p_cons 8.717794e-01   p_joint 1.533235e-02

Joint ci ratio: 5.250332e-02	ci left: 1.526536e-02	ci right 1.609126e-02	k: 5486	n:350000
Cons ci ratio: 2.540946e-03	ci left: 8.706851e-01	ci right 8.729031e-01	k: 305129	n:350000
KS ci ratio: 1.047822e-01	ci left: 3.774099e-03	ci right 4.194179e-03	k: 1393	n:350000
FAM153B   350000 perm   107 sec   (3281 perm/sec)   p_kst 3.980000e-03   p_cons 8.717971e-01   p_joint 1.567429e-02

Joint ci ratio: 6.641786e-02	ci left: 9.264918e-03	ci right 9.904125e-03	k: 3449	n:360000
Cons ci ratio: 2.637070e-03	ci left: 8.587675e-01	ci right 8.610378e-01	k: 309566	n:360000
KS ci ratio: 1.030582e-01	ci left: 3.796427e-03	ci right 4.211619e-03	k: 1440	n:360000
FAM153B   360000 perm   111 sec   (3246 perm/sec)   p_kst 4.000000e-03   p_cons 8.599056e-01   p_joint 9.580556e-03

Joint ci ratio: 6.644599e-02	ci left: 9.009160e-03	ci right 9.630994e-03	k: 3447	n:370000
Cons ci ratio: 2.600082e-03	ci left: 8.588859e-01	ci right 8.611247e-01	k: 318203	n:370000
KS ci ratio: 1.017951e-01	ci left: 3.788625e-03	ci right 4.197582e-03	k: 1476	n:370000
FAM153B   370000 perm   115 sec   (3212 perm/sec)   p_kst 3.989189e-03   p_cons 8.600081e-01   p_joint 9.316216e-03

Joint ci ratio: 6.548370e-02	ci left: 9.036074e-03	ci right 9.650390e-03	k: 3549	n:380000
Cons ci ratio: 2.565168e-03	ci left: 8.589455e-01	ci right 8.611543e-01	k: 326820	n:380000
KS ci ratio: 1.004440e-01	ci left: 3.791526e-03	ci right 4.195043e-03	k: 1516	n:380000
FAM153B   380000 perm   120 sec   (3177 perm/sec)   p_kst 3.989474e-03   p_cons 8.600526e-01   p_joint 9.339474e-03

Joint ci ratio: 6.724361e-02	ci left: 8.347878e-03	ci right 8.931253e-03	k: 3368	n:390000
Cons ci ratio: 2.531866e-03	ci left: 8.589791e-01	ci right 8.611592e-01	k: 335428	n:390000
KS ci ratio: 9.917738e-02	ci left: 3.791811e-03	ci right 4.189973e-03	k: 1555	n:390000
FAM153B   390000 perm   124 sec   (3144 perm/sec)   p_kst 3.987179e-03   p_cons 8.600718e-01   p_joint 8.635897e-03

Outputting figure to mutsig2_images.part000000000060/FAM153B.4_1248_390000_0.0039872_0.86007_0.0086359.png
                gene_name: FAM153B
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0038 
       ci_ks_bounds_right: 0.0042 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0089 

Current progress: 47 percent done.
FAM154B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
Cons ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
KS ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
FAM154B   10000 perm   2 sec   (6074 perm/sec)   p_kst 6.430000e-02   p_cons 4.665000e-01   p_joint 1.484000e-01

Joint ci ratio: 7.086189e-02	ci left: 1.279777e-01	ci right 1.374294e-01	k: 2653	n:20000
Cons ci ratio: 3.069411e-02	ci left: 4.422392e-01	ci right 4.560756e-01	k: 8983	n:20000
KS ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
FAM154B   20000 perm   4 sec   (5515 perm/sec)   p_kst 6.605000e-02   p_cons 4.491500e-01   p_joint 1.326500e-01

Joint ci ratio: 6.327110e-02	ci left: 1.098328e-01	ci right 1.170422e-01	k: 3402	n:30000
Cons ci ratio: 2.510713e-02	ci left: 4.426277e-01	ci right 4.539157e-01	k: 13448	n:30000
KS ci ratio: 8.420777e-02	ci left: 6.452293e-02	ci right 7.022787e-02	k: 2020	n:30000
FAM154B   30000 perm   6 sec   (5253 perm/sec)   p_kst 6.733333e-02   p_cons 4.482667e-01   p_joint 1.134000e-01

Outputting figure to mutsig2_images.part000000000060/FAM154B.4_1209_30000_0.067333_0.44827_0.1134.png
                gene_name: FAM154B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
FAM115A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 2.428074e-01	ci left: 2.231105e-02	ci right 2.856957e-02	k: 253	n:10000
FAM115A   10000 perm   2 sec   (5866 perm/sec)   p_kst 2.530000e-02   p_cons 1.352000e-01   p_joint 7.400000e-03

Joint ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
Cons ci ratio: 7.069307e-02	ci left: 1.285194e-01	ci right 1.379875e-01	k: 2664	n:20000
KS ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
FAM115A   20000 perm   4 sec   (5365 perm/sec)   p_kst 2.685000e-02   p_cons 1.332000e-01   p_joint 1.820000e-02

Joint ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
Cons ci ratio: 5.732046e-02	ci left: 1.309873e-01	ci right 1.387502e-01	k: 4045	n:30000
KS ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
FAM115A   30000 perm   6 sec   (5186 perm/sec)   p_kst 2.713333e-02   p_cons 1.348333e-01   p_joint 1.810000e-02

Joint ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
Cons ci ratio: 4.998798e-02	ci left: 1.299091e-01	ci right 1.365943e-01	k: 5329	n:40000
KS ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
FAM115A   40000 perm   8 sec   (5053 perm/sec)   p_kst 2.567500e-02   p_cons 1.332250e-01   p_joint 2.922500e-02

Joint ci ratio: 8.508753e-02	ci left: 3.898475e-02	ci right 4.246883e-02	k: 2035	n:50000
Cons ci ratio: 4.682807e-02	ci left: 1.200341e-01	ci right 1.258097e-01	k: 6145	n:50000
KS ci ratio: 1.076808e-01	ci left: 2.442796e-02	ci right 2.722746e-02	k: 1290	n:50000
FAM115A   50000 perm   10 sec   (4961 perm/sec)   p_kst 2.580000e-02   p_cons 1.229000e-01   p_joint 4.070000e-02

Joint ci ratio: 8.924960e-02	ci left: 2.975803e-02	ci right 3.255423e-02	k: 1868	n:60000
Cons ci ratio: 4.262687e-02	ci left: 1.208939e-01	ci right 1.261760e-01	k: 7411	n:60000
KS ci ratio: 9.811050e-02	ci left: 2.464370e-02	ci right 2.720243e-02	k: 1554	n:60000
FAM115A   60000 perm   12 sec   (4821 perm/sec)   p_kst 2.590000e-02   p_cons 1.235167e-01   p_joint 3.113333e-02

Outputting figure to mutsig2_images.part000000000060/FAM115A.3_2798_60000_0.0259_0.12352_0.031133.png
                gene_name: FAM115A
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 51 percent done.
FAM119A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
FAM119A   10000 perm   1 sec   (7146 perm/sec)   p_kst 5.095000e-01   p_cons 7.349000e-01   p_joint 8.250000e-01

Outputting figure to mutsig2_images.part000000000060/FAM119A.3_669_10000_0.5095_0.7349_0.825.png
                gene_name: FAM119A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 53 percent done.
FAM124B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
FAM124B   10000 perm   2 sec   (6364 perm/sec)   p_kst 6.060000e-02   p_cons 8.974000e-01   p_joint 2.500000e-01

Joint ci ratio: 5.966693e-02	ci left: 1.721773e-01	ci right 1.828166e-01	k: 3549	n:20000
Cons ci ratio: 9.825426e-03	ci left: 8.839546e-01	ci right 8.927322e-01	k: 17768	n:20000
KS ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
FAM124B   20000 perm   3 sec   (5769 perm/sec)   p_kst 6.170000e-02   p_cons 8.884000e-01   p_joint 1.774500e-01

Joint ci ratio: 5.125991e-02	ci left: 1.589354e-01	ci right 1.673300e-01	k: 4893	n:30000
Cons ci ratio: 7.978897e-03	ci left: 8.858641e-01	ci right 8.929936e-01	k: 26684	n:30000
KS ci ratio: 8.963224e-02	ci left: 5.724078e-02	ci right 6.264483e-02	k: 1797	n:30000
FAM124B   30000 perm   5 sec   (5532 perm/sec)   p_kst 5.990000e-02   p_cons 8.894667e-01   p_joint 1.631000e-01

Outputting figure to mutsig2_images.part000000000060/FAM124B.3_1467_30000_0.0599_0.88947_0.1631.png
                gene_name: FAM124B
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 55 percent done.
FAM125B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
Cons ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
KS ci ratio: 6.296845e-02	ci left: 2.704228e-01	ci right 2.881060e-01	k: 2792	n:10000
FAM125B   10000 perm   1 sec   (7547 perm/sec)   p_kst 2.792000e-01   p_cons 2.610000e-02   p_joint 1.628000e-01

Joint ci ratio: 7.789121e-02	ci left: 1.080049e-01	ci right 1.168081e-01	k: 2247	n:20000
Cons ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
KS ci ratio: 4.459766e-02	ci left: 2.723944e-01	ci right 2.848700e-01	k: 5572	n:20000
FAM125B   20000 perm   3 sec   (6638 perm/sec)   p_kst 2.786000e-01   p_cons 2.395000e-02   p_joint 1.123500e-01

Joint ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
Cons ci ratio: 1.890189e-01	ci left: 1.279637e-02	ci right 1.549893e-02	k: 423	n:30000
KS ci ratio: 3.614258e-02	ci left: 2.765482e-01	ci right 2.867608e-01	k: 8449	n:30000
FAM125B   30000 perm   5 sec   (6243 perm/sec)   p_kst 2.816333e-01   p_cons 1.410000e-02   p_joint 2.323333e-02

Joint ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
Cons ci ratio: 1.634516e-01	ci left: 1.301542e-02	ci right 1.535588e-02	k: 566	n:40000
KS ci ratio: 3.127080e-02	ci left: 2.776187e-01	ci right 2.864630e-01	k: 11281	n:40000
FAM125B   40000 perm   7 sec   (6028 perm/sec)   p_kst 2.820250e-01   p_cons 1.415000e-02   p_joint 2.442500e-02

Joint ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
Cons ci ratio: 1.463793e-01	ci left: 1.310411e-02	ci right 1.519286e-02	k: 706	n:50000
KS ci ratio: 2.798259e-02	ci left: 2.778993e-01	ci right 2.858060e-01	k: 14092	n:50000
FAM125B   50000 perm   9 sec   (5850 perm/sec)   p_kst 2.818400e-01   p_cons 1.412000e-02   p_joint 2.314000e-02

Joint ci ratio: 1.047295e-01	ci left: 2.162044e-02	ci right 2.402602e-02	k: 1368	n:60000
Cons ci ratio: 1.347907e-01	ci left: 1.296234e-02	ci right 1.485178e-02	k: 833	n:60000
KS ci ratio: 2.548009e-02	ci left: 2.792651e-01	ci right 2.864893e-01	k: 16972	n:60000
FAM125B   60000 perm   11 sec   (5697 perm/sec)   p_kst 2.828667e-01   p_cons 1.388333e-02   p_joint 2.280000e-02

Joint ci ratio: 9.687287e-02	ci left: 2.174876e-02	ci right 2.397675e-02	k: 1599	n:70000
Cons ci ratio: 1.245975e-01	ci left: 1.307345e-02	ci right 1.482433e-02	k: 975	n:70000
KS ci ratio: 2.361229e-02	ci left: 2.791525e-01	ci right 2.858370e-01	k: 19774	n:70000
FAM125B   70000 perm   13 sec   (5558 perm/sec)   p_kst 2.824857e-01   p_cons 1.392857e-02   p_joint 2.284286e-02

Joint ci ratio: 9.106513e-02	ci left: 2.160564e-02	ci right 2.367918e-02	k: 1810	n:80000
Cons ci ratio: 1.167324e-01	ci left: 1.308799e-02	ci right 1.472254e-02	k: 1111	n:80000
KS ci ratio: 2.214805e-02	ci left: 2.782607e-01	ci right 2.845051e-01	k: 22510	n:80000
FAM125B   80000 perm   15 sec   (5437 perm/sec)   p_kst 2.813750e-01   p_cons 1.388750e-02   p_joint 2.262500e-02

Joint ci ratio: 8.640925e-02	ci left: 2.138869e-02	ci right 2.333115e-02	k: 2011	n:90000
Cons ci ratio: 1.109594e-01	ci left: 1.291829e-02	ci right 1.444662e-02	k: 1230	n:90000
KS ci ratio: 2.088246e-02	ci left: 2.784194e-01	ci right 2.843059e-01	k: 25322	n:90000
FAM125B   90000 perm   17 sec   (5325 perm/sec)   p_kst 2.813556e-01   p_cons 1.366667e-02   p_joint 2.234444e-02

Joint ci ratio: 1.573133e-02	ci left: 3.800454e-01	ci right 3.860814e-01	k: 38306	n:100000
Cons ci ratio: 7.957843e-02	ci left: 2.274643e-02	ci right 2.464133e-02	k: 2368	n:100000
KS ci ratio: 1.982686e-02	ci left: 2.782454e-01	ci right 2.838273e-01	k: 28103	n:100000
FAM125B   100000 perm   19 sec   (5216 perm/sec)   p_kst 2.810300e-01   p_cons 2.368000e-02   p_joint 3.830600e-01

Outputting figure to mutsig2_images.part000000000060/FAM125B.3_1004_100000_0.28103_0.02368_0.38306.png
                gene_name: FAM125B
               theta_stop: 0.080 
                    nperm: 100000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 57 percent done.
FAM126A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
Cons ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
KS ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
FAM126A   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.440000e-02   p_cons 1.520000e-01   p_joint 1.990000e-02

Joint ci ratio: 7.145284e-02	ci left: 1.261067e-01	ci right 1.355010e-01	k: 2615	n:20000
Cons ci ratio: 6.274169e-02	ci left: 1.581520e-01	ci right 1.684461e-01	k: 3265	n:20000
KS ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
FAM126A   20000 perm   4 sec   (5562 perm/sec)   p_kst 3.735000e-02   p_cons 1.632500e-01   p_joint 1.307500e-01

Joint ci ratio: 7.016582e-02	ci left: 9.091730e-02	ci right 9.756152e-02	k: 2826	n:30000
Cons ci ratio: 5.100483e-02	ci left: 1.602879e-01	ci right 1.687105e-01	k: 4934	n:30000
KS ci ratio: 1.147638e-01	ci left: 3.528116e-02	ci right 3.960901e-02	k: 1122	n:30000
FAM126A   30000 perm   6 sec   (5296 perm/sec)   p_kst 3.740000e-02   p_cons 1.644667e-01   p_joint 9.420000e-02

Joint ci ratio: 8.151781e-02	ci left: 5.241792e-02	ci right 5.689701e-02	k: 2185	n:40000
Cons ci ratio: 4.415553e-02	ci left: 1.609532e-01	ci right 1.682456e-01	k: 6583	n:40000
KS ci ratio: 9.940024e-02	ci left: 3.556173e-02	ci right 3.930581e-02	k: 1496	n:40000
FAM126A   40000 perm   8 sec   (5190 perm/sec)   p_kst 3.740000e-02   p_cons 1.645750e-01   p_joint 5.462500e-02

Outputting figure to mutsig2_images.part000000000060/FAM126A.3_1606_40000_0.0374_0.16457_0.054625.png
                gene_name: FAM126A
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 59 percent done.
FAM129C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
Cons ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
FAM129C   10000 perm   2 sec   (6195 perm/sec)   p_kst 4.535000e-01   p_cons 2.637000e-01   p_joint 3.771000e-01

Outputting figure to mutsig2_images.part000000000060/FAM129C.3_2275_10000_0.4535_0.2637_0.3771.png
                gene_name: FAM129C
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 61 percent done.
FAM131A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
Cons ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
FAM131A   10000 perm   1 sec   (6793 perm/sec)   p_kst 6.144000e-01   p_cons 2.446000e-01   p_joint 4.830000e-01

Outputting figure to mutsig2_images.part000000000060/FAM131A.3_1125_10000_0.6144_0.2446_0.483.png
                gene_name: FAM131A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 63 percent done.
FAM161A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
FAM161A   10000 perm   2 sec   (6223 perm/sec)   p_kst 3.570000e-01   p_cons 1.263000e-01   p_joint 2.101000e-01

Joint ci ratio: 5.154645e-02	ci left: 2.184850e-01	ci right 2.300953e-01	k: 4485	n:20000
Cons ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
KS ci ratio: 3.752640e-02	ci left: 3.463237e-01	ci right 3.596191e-01	k: 7059	n:20000
FAM161A   20000 perm   4 sec   (5596 perm/sec)   p_kst 3.529500e-01   p_cons 1.307000e-01   p_joint 2.242500e-01

Outputting figure to mutsig2_images.part000000000060/FAM161A.3_2007_20000_0.35295_0.1307_0.22425.png
                gene_name: FAM161A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 65 percent done.
FAM108B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.231743e-02	ci left: 5.856032e-01	ci right 6.049412e-01	k: 5953	n:10000
KS ci ratio: 1.764158e-02	ci left: 8.241191e-01	ci right 8.388872e-01	k: 8316	n:10000
FAM108B1   10000 perm   1 sec   (7478 perm/sec)   p_kst 8.316000e-01   p_cons 5.953000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM108B1.2_910_10000_0.8316_0.5953_1.png
                gene_name: FAM108B1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FAM113B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
Cons ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
KS ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
FAM113B   10000 perm   1 sec   (6854 perm/sec)   p_kst 8.104000e-01   p_cons 5.619000e-01   p_joint 7.160000e-01

Outputting figure to mutsig2_images.part000000000060/FAM113B.2_1303_10000_0.8104_0.5619_0.716.png
                gene_name: FAM113B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 69 percent done.
FAM117B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
Cons ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
FAM117B   10000 perm   2 sec   (6548 perm/sec)   p_kst 1.994000e-01   p_cons 1.407000e-01   p_joint 2.381000e-01

Outputting figure to mutsig2_images.part000000000060/FAM117B.2_1802_10000_0.1994_0.1407_0.2381.png
                gene_name: FAM117B
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 71 percent done.
FAM118B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
FAM118B   10000 perm   1 sec   (6772 perm/sec)   p_kst 2.033000e-01   p_cons 1.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM118B.2_1084_10000_0.2033_0.199_1.png
                gene_name: FAM118B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
FAM120AOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
KS ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
FAM120AOS   10000 perm   1 sec   (7064 perm/sec)   p_kst 6.820000e-01   p_cons 7.915000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM120AOS.2_783_10000_0.682_0.7915_1.png
                gene_name: FAM120AOS
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
FAM120C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
Cons ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
FAM120C   10000 perm   2 sec   (6138 perm/sec)   p_kst 5.308000e-01   p_cons 3.826000e-01   p_joint 4.409000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120C.2_3377_10000_0.5308_0.3826_0.4409.png
                gene_name: FAM120C
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 78 percent done.
FAM124A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.053044e-03	ci left: 9.736569e-01	ci right 9.796610e-01	k: 9768	n:10000
Cons ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
FAM124A   10000 perm   2 sec   (6525 perm/sec)   p_kst 5.579000e-01   p_cons 4.657000e-01   p_joint 9.768000e-01

Outputting figure to mutsig2_images.part000000000060/FAM124A.2_1769_10000_0.5579_0.4657_0.9768.png
                gene_name: FAM124A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 80 percent done.
FAM126B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
Cons ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
KS ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
FAM126B   10000 perm   2 sec   (6583 perm/sec)   p_kst 4.544000e-01   p_cons 6.818000e-01   p_joint 6.936000e-01

Outputting figure to mutsig2_images.part000000000060/FAM126B.2_1633_10000_0.4544_0.6818_0.6936.png
                gene_name: FAM126B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 82 percent done.
FAM127C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
Cons ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
KS ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
FAM127C   10000 perm   1 sec   (7243 perm/sec)   p_kst 1.940000e-01   p_cons 8.391000e-01   p_joint 2.175000e-01

Outputting figure to mutsig2_images.part000000000060/FAM127C.2_346_10000_0.194_0.8391_0.2175.png
                gene_name: FAM127C
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 84 percent done.
FAM128A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
Cons ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
KS ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
FAM128A   10000 perm   1 sec   (7068 perm/sec)   p_kst 1.091000e-01   p_cons 3.695000e-01   p_joint 3.368000e-01

Joint ci ratio: 2.691605e-02	ci left: 5.076967e-01	ci right 5.215990e-01	k: 10293	n:20000
Cons ci ratio: 3.846061e-02	ci left: 3.352249e-01	ci right 3.484212e-01	k: 6836	n:20000
KS ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
FAM128A   20000 perm   3 sec   (6425 perm/sec)   p_kst 1.095000e-01   p_cons 3.418000e-01   p_joint 5.146500e-01

Outputting figure to mutsig2_images.part000000000060/FAM128A.2_489_20000_0.1095_0.3418_0.51465.png
                gene_name: FAM128A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 86 percent done.
FAM153A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
Cons ci ratio: 2.270525e-02	ci left: 7.410154e-01	ci right 7.581351e-01	k: 7462	n:9954
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
FAM153A   10000 perm   1 sec   (6777 perm/sec)   p_kst 4.150000e-02   p_cons 7.496484e-01   p_joint 5.277000e-01

Joint ci ratio: 4.505126e-02	ci left: 2.683730e-01	ci right 2.807926e-01	k: 5491	n:20000
Cons ci ratio: 1.594253e-02	ci left: 7.462147e-01	ci right 7.582573e-01	k: 14977	n:19909
KS ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
FAM153A   20000 perm   3 sec   (6218 perm/sec)   p_kst 4.115000e-02   p_cons 7.522728e-01   p_joint 2.745500e-01

Joint ci ratio: 3.508829e-02	ci left: 2.886159e-01	ci right 2.989573e-01	k: 8813	n:30000
Cons ci ratio: 1.301016e-02	ci left: 7.474073e-01	ci right 7.572284e-01	k: 22483	n:29884
KS ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
FAM153A   30000 perm   5 sec   (5940 perm/sec)   p_kst 4.213333e-02   p_cons 7.523424e-01   p_joint 2.937667e-01

Joint ci ratio: 2.033527e-02	ci left: 4.766674e-01	ci right 4.864853e-01	k: 19263	n:40000
Cons ci ratio: 1.126564e-02	ci left: 7.481342e-01	ci right 7.566353e-01	k: 29978	n:39843
KS ci ratio: 9.291654e-02	ci left: 4.061722e-02	ci right 4.459953e-02	k: 1703	n:40000
FAM153A   40000 perm   7 sec   (5705 perm/sec)   p_kst 4.257500e-02   p_cons 7.524032e-01   p_joint 4.815750e-01

Outputting figure to mutsig2_images.part000000000060/FAM153A.2_1009_40000_0.042575_0.7524_0.48157.png
                gene_name: FAM153A
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 88 percent done.
FAM155A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
Cons ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
KS ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
FAM155A   10000 perm   1 sec   (6966 perm/sec)   p_kst 1.379000e-01   p_cons 1.034000e-01   p_joint 5.506000e-01

Joint ci ratio: 9.194635e-03	ci left: 8.966755e-01	ci right 9.050075e-01	k: 18018	n:20000
Cons ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
KS ci ratio: 6.939191e-02	ci left: 1.328045e-01	ci right 1.424011e-01	k: 2751	n:20000
FAM155A   20000 perm   3 sec   (6211 perm/sec)   p_kst 1.375500e-01   p_cons 1.029500e-01   p_joint 9.009000e-01

Outputting figure to mutsig2_images.part000000000060/FAM155A.2_1389_20000_0.13755_0.10295_0.9009.png
                gene_name: FAM155A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 90 percent done.
FAM158A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
FAM158A   10000 perm   1 sec   (7820 perm/sec)   p_kst 6.188000e-01   p_cons 8.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM158A.2_647_10000_0.6188_0.8282_1.png
                gene_name: FAM158A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
FAM162B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
Cons ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
KS ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
FAM162B   10000 perm   1 sec   (7694 perm/sec)   p_kst 2.878000e-01   p_cons 3.980000e-02   p_joint 8.437000e-01

Joint ci ratio: 1.201466e-02	ci left: 8.367185e-01	ci right 8.468820e-01	k: 16837	n:20000
Cons ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
KS ci ratio: 4.378533e-02	ci left: 2.797934e-01	ci right 2.923689e-01	k: 5721	n:20000
FAM162B   20000 perm   3 sec   (6767 perm/sec)   p_kst 2.860500e-01   p_cons 3.940000e-02   p_joint 8.418500e-01

Joint ci ratio: 1.804893e-02	ci left: 6.056900e-01	ci right 6.167552e-01	k: 18337	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 3.604459e-02	ci left: 2.776421e-01	ci right 2.878667e-01	k: 8482	n:30000
FAM162B   30000 perm   5 sec   (6317 perm/sec)   p_kst 2.827333e-01   p_cons 3.980000e-02   p_joint 6.112333e-01

Joint ci ratio: 1.563453e-02	ci left: 6.063272e-01	ci right 6.159067e-01	k: 24445	n:40000
Cons ci ratio: 9.515489e-02	ci left: 3.876009e-02	ci right 4.265695e-02	k: 1627	n:40000
KS ci ratio: 3.134625e-02	ci left: 2.766484e-01	ci right 2.854834e-01	k: 11242	n:40000
FAM162B   40000 perm   7 sec   (6125 perm/sec)   p_kst 2.810500e-01   p_cons 4.067500e-02   p_joint 6.111250e-01

Outputting figure to mutsig2_images.part000000000060/FAM162B.2_505_40000_0.28105_0.040675_0.61113.png
                gene_name: FAM162B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 94 percent done.
FAM164A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
Cons ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
KS ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
FAM164A   10000 perm   1 sec   (6891 perm/sec)   p_kst 6.267000e-01   p_cons 3.842000e-01   p_joint 5.193000e-01

Outputting figure to mutsig2_images.part000000000060/FAM164A.2_1014_10000_0.6267_0.3842_0.5193.png
                gene_name: FAM164A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 96 percent done.
FAM164C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
Cons ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
FAM164C   10000 perm   1 sec   (6713 perm/sec)   p_kst 8.620000e-02   p_cons 2.730000e-01   p_joint 1.809000e-01

Joint ci ratio: 6.229770e-02	ci left: 1.600772e-01	ci right 1.704203e-01	k: 3304	n:20000
Cons ci ratio: 4.482617e-02	ci left: 2.703588e-01	ci right 2.828062e-01	k: 5531	n:20000
KS ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
FAM164C   20000 perm   3 sec   (6054 perm/sec)   p_kst 8.800000e-02   p_cons 2.765500e-01   p_joint 1.652000e-01

Outputting figure to mutsig2_images.part000000000060/FAM164C.2_1379_20000_0.088_0.27655_0.1652.png
                gene_name: FAM164C
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 98 percent done.
FAM166A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
Cons ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
KS ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
FAM166A   10000 perm   1 sec   (7105 perm/sec)   p_kst 4.760000e-01   p_cons 8.681000e-01   p_joint 8.094000e-01

Outputting figure to mutsig2_images.part000000000060/FAM166A.2_982_10000_0.476_0.8681_0.8094.png
                gene_name: FAM166A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000060
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 60 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 4421934: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000061> was used as the working directory.
Started at Wed Oct 24 17:43:39 2012
Results reported at Wed Oct 24 18:09:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000061.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000061.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 61  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000061.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1792.38 sec.
    Max Memory :      5306 MB
    Max Swap   :      7669 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
61
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 61
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 61: processing genes 5429 - 5519
Calculating significance of each gene.
Using projection method.
5429	FAM167A	2.867348e-01
5430	FAM167B	1
5431	FAM168A	1
5432	FAM168B	1.145644e-01
5433	FAM169A	4.388352e-01
5434	FAM169B	1
5435	FAM170A	2.253695e-01
5436	FAM171A1	2.493118e-02
5437	FAM171B	5.474109e-02
5438	FAM172A	6.287337e-01
5439	FAM173A	1
5440	FAM173B	3.204378e-01
5441	FAM174A	5.859773e-01
5442	FAM174B	1.327510e-01
5443	FAM175A	6.143788e-01
5444	FAM175B	6.757113e-01
5445	FAM176A	1
5446	FAM176B	1
5447	FAM177A1	3.942551e-01
5448	FAM177B	1.012868e-01
5449	FAM178A	7.578775e-01
5450	FAM179A	8.603313e-01
5451	FAM179B	9.684639e-01
5452	FAM180A	1
5453	FAM181A	3.449727e-01
5454	FAM181B	1.821985e-01
5455	FAM183A	1
5456	FAM184A	8.797604e-01
5457	FAM186B	9.129918e-01
5458	FAM187B	8.446274e-01
5459	FAM188A	8.175862e-01
5460	FAM188B	1
5461	FAM189A2	1
5462	FAM189B	1
5463	FAM18A	4.417434e-01
5464	FAM18B	7.265480e-01
5465	FAM18B2	7.650218e-01
5466	FAM190A	4.621776e-01
5467	FAM190B	4.445930e-01
5468	FAM192A	1
5469	FAM193A	1
5470	FAM193B	1
5471	FAM194A	2.546794e-01
5472	FAM195A	1
5473	FAM196A	7.199688e-01
5474	FAM198B	9.040615e-01
5475	FAM199X	5.475738e-01
5476	FAM19A1	1.885628e-01
5477	FAM19A2	1.085973e-01
5478	FAM19A3	4.419377e-01
5479	FAM19A4	1
5480	FAM19A5	5.560341e-01
5481	FAM20A	1
5482	FAM20B	2.827162e-01
5483	FAM21A	9.628262e-01
5484	FAM21B	1
5485	FAM21C	6.939592e-01
5486	FAM22F	1
5487	FAM22G	1
5488	FAM24A	1
5489	FAM24B	1
5490	FAM26D	3.849264e-01
5491	FAM26E	8.217692e-01
5492	FAM26F	1
5493	FAM32A	1.405153e-01
5494	FAM35A	1
5495	FAM36A	1
5496	FAM3A	5.076451e-01
5497	FAM3B	7.439399e-01
5498	FAM3C	3.570440e-02
5499	FAM3D	1
5500	FAM40A	9.789638e-01
5501	FAM40B	1
5502	FAM43A	6.999513e-01
5503	FAM43B	1
5504	FAM45A	4.541884e-01
5505	FAM46A	2.766666e-01
5506	FAM46B	8.809156e-01
5507	FAM46C	9.284876e-01
In gene FAM46D the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 1171    n = 1	mu =   3.68e-07
5508	FAM46D	6.551851e-01
5509	FAM47A	1
5510	FAM47B	5.226262e-04
5511	FAM47C	7.719060e-01
5512	FAM48A	9.465852e-01
5513	FAM48B1	2.735432e-04
5514	FAM48B2	1.254330e-01
5515	FAM49A	4.377218e-01
5516	FAM49B	7.126625e-01
5517	FAM50A	1
5518	FAM50B	8.194705e-01
5519	FAM53A	9.061125e-01
Done

Running MutSig 2:
Scatter job 61: processing genes 5429 - 5519
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM47C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
FAM47C   10000 perm   3 sec   (3377 perm/sec)   p_kst 8.106000e-01   p_cons 7.828000e-01   p_joint 9.303000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47C.27_3112_10000_0.8106_0.7828_0.9303.png
                gene_name: FAM47C
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 2 percent done.
FAM47A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
KS ci ratio: 1.112701e-02	ci left: 9.201785e-01	ci right 9.305721e-01	k: 9255	n:10000
FAM47A   10000 perm   3 sec   (3794 perm/sec)   p_kst 9.255000e-01   p_cons 8.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM47A.23_2380_10000_0.9255_0.8136_1.png
                gene_name: FAM47A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
FAM47B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
Cons ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
KS ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
FAM47B   10000 perm   2 sec   (4183 perm/sec)   p_kst 1.986000e-01   p_cons 1.767000e-01   p_joint 1.056000e-01

Joint ci ratio: 5.731476e-02	ci left: 1.840890e-01	ci right 1.950014e-01	k: 3790	n:20000
Cons ci ratio: 5.953444e-02	ci left: 1.728196e-01	ci right 1.834741e-01	k: 3562	n:20000
KS ci ratio: 5.608573e-02	ci left: 1.907652e-01	ci right 2.018232e-01	k: 3925	n:20000
FAM47B   20000 perm   5 sec   (3791 perm/sec)   p_kst 1.962500e-01   p_cons 1.781000e-01   p_joint 1.895000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47B.21_1942_20000_0.19625_0.1781_0.1895.png
                gene_name: FAM47B
               theta_stop: 0.060 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 6 percent done.
FAM48B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
Cons ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
FAM48B1   10000 perm   2 sec   (4216 perm/sec)   p_kst 5.090000e-02   p_cons 9.349000e-01   p_joint 1.279000e-01

Joint ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
Cons ci ratio: 7.244127e-03	ci left: 9.326216e-01	ci right 9.394510e-01	k: 18722	n:20000
KS ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
FAM48B1   20000 perm   5 sec   (3838 perm/sec)   p_kst 5.365000e-02   p_cons 9.361000e-01   p_joint 1.281000e-01

Joint ci ratio: 6.251723e-02	ci left: 1.122326e-01	ci right 1.195086e-01	k: 3475	n:30000
Cons ci ratio: 5.925756e-03	ci left: 9.330353e-01	ci right 9.386133e-01	k: 28076	n:30000
KS ci ratio: 9.488055e-02	ci left: 5.127353e-02	ci right 5.641331e-02	k: 1614	n:30000
FAM48B1   30000 perm   8 sec   (3696 perm/sec)   p_kst 5.380000e-02   p_cons 9.358667e-01   p_joint 1.158333e-01

Outputting figure to mutsig2_images.part000000000061/FAM48B1.13_2667_30000_0.0538_0.93587_0.11583.png
                gene_name: FAM48B1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
FAM171A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
Cons ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
FAM171A1   10000 perm   2 sec   (4424 perm/sec)   p_kst 9.287000e-01   p_cons 1.233000e-01   p_joint 3.281000e-01

Joint ci ratio: 4.023064e-02	ci left: 3.153765e-01	ci right 3.283753e-01	k: 6437	n:20000
Cons ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
KS ci ratio: 7.693796e-03	ci left: 9.248414e-01	ci right 9.320334e-01	k: 18570	n:20000
FAM171A1   20000 perm   5 sec   (3967 perm/sec)   p_kst 9.285000e-01   p_cons 1.260500e-01   p_joint 3.218500e-01

Outputting figure to mutsig2_images.part000000000061/FAM171A1.12_2705_20000_0.9285_0.12605_0.32185.png
                gene_name: FAM171A1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 10 percent done.
FAM171B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
Cons ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
FAM171B   10000 perm   2 sec   (4292 perm/sec)   p_kst 7.539000e-01   p_cons 4.634000e-01   p_joint 8.093000e-01

Outputting figure to mutsig2_images.part000000000061/FAM171B.12_2513_10000_0.7539_0.4634_0.8093.png
                gene_name: FAM171B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 12 percent done.
FAM179B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
Cons ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
KS ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
FAM179B   10000 perm   3 sec   (3928 perm/sec)   p_kst 1.463000e-01   p_cons 4.016000e-01   p_joint 2.028000e-01

Outputting figure to mutsig2_images.part000000000061/FAM179B.10_5239_10000_0.1463_0.4016_0.2028.png
                gene_name: FAM179B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 14 percent done.
FAM178A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
KS ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
FAM178A   10000 perm   2 sec   (4211 perm/sec)   p_kst 3.487000e-01   p_cons 1.025000e-01   p_joint 2.683000e-01

Joint ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
Cons ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
KS ci ratio: 3.904908e-02	ci left: 3.284580e-01	ci right 3.415900e-01	k: 6700	n:20000
FAM178A   20000 perm   5 sec   (3889 perm/sec)   p_kst 3.350000e-01   p_cons 8.525000e-02   p_joint 1.326000e-01

Outputting figure to mutsig2_images.part000000000061/FAM178A.7_3677_20000_0.335_0.08525_0.1326.png
                gene_name: FAM178A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
FAM48B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
FAM48B2   10000 perm   2 sec   (4978 perm/sec)   p_kst 6.681000e-01   p_cons 3.184000e-01   p_joint 6.723000e-01

Outputting figure to mutsig2_images.part000000000061/FAM48B2.7_2457_10000_0.6681_0.3184_0.6723.png
                gene_name: FAM48B2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 18 percent done.
FAM184A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
Cons ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
KS ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
FAM184A   10000 perm   2 sec   (4709 perm/sec)   p_kst 9.139000e-01   p_cons 1.262000e-01   p_joint 3.601000e-01

Joint ci ratio: 2.767774e-02	ci left: 4.937458e-01	ci right 5.076540e-01	k: 10014	n:20000
Cons ci ratio: 6.857068e-02	ci left: 1.356129e-01	ci right 1.452919e-01	k: 2808	n:20000
KS ci ratio: 8.667985e-03	ci left: 9.069177e-01	ci right 9.148623e-01	k: 18219	n:20000
FAM184A   20000 perm   5 sec   (4203 perm/sec)   p_kst 9.109500e-01   p_cons 1.404000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000061/FAM184A.6_3495_20000_0.91095_0.1404_0.5007.png
                gene_name: FAM184A
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 20 percent done.
FAM196A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
Cons ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
FAM196A   10000 perm   2 sec   (5202 perm/sec)   p_kst 9.400000e-01   p_cons 1.873000e-01   p_joint 5.567000e-01

Outputting figure to mutsig2_images.part000000000061/FAM196A.6_1452_10000_0.94_0.1873_0.5567.png
                gene_name: FAM196A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 22 percent done.
FAM169A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
Cons ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
FAM169A   10000 perm   2 sec   (5635 perm/sec)   p_kst 1.050000e-01   p_cons 5.900000e-02   p_joint 5.120000e-02

Joint ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
Cons ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
KS ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
FAM169A   20000 perm   4 sec   (5002 perm/sec)   p_kst 1.109000e-01   p_cons 5.790000e-02   p_joint 4.825000e-02

Joint ci ratio: 9.871899e-02	ci left: 4.746312e-02	ci right 5.242450e-02	k: 1497	n:30000
Cons ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
KS ci ratio: 6.364084e-02	ci left: 1.086824e-01	ci right 1.158595e-01	k: 3367	n:30000
FAM169A   30000 perm   6 sec   (4763 perm/sec)   p_kst 1.122333e-01   p_cons 6.213333e-02   p_joint 4.990000e-02

Outputting figure to mutsig2_images.part000000000061/FAM169A.5_2061_30000_0.11223_0.062133_0.0499.png
                gene_name: FAM169A
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 24 percent done.
FAM190B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
Cons ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
KS ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
FAM190B   10000 perm   2 sec   (4772 perm/sec)   p_kst 4.290000e-01   p_cons 6.959000e-01   p_joint 7.852000e-01

Outputting figure to mutsig2_images.part000000000061/FAM190B.5_2545_10000_0.429_0.6959_0.7852.png
                gene_name: FAM190B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 27 percent done.
FAM194A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
Cons ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
FAM194A   10000 perm   2 sec   (5222 perm/sec)   p_kst 6.702000e-01   p_cons 3.833000e-01   p_joint 6.090000e-01

Outputting figure to mutsig2_images.part000000000061/FAM194A.5_2048_10000_0.6702_0.3833_0.609.png
                gene_name: FAM194A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
FAM21C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
Cons ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
FAM21C   10000 perm   2 sec   (4336 perm/sec)   p_kst 4.691000e-01   p_cons 1.962000e-01   p_joint 4.413000e-01

Outputting figure to mutsig2_images.part000000000061/FAM21C.5_4083_10000_0.4691_0.1962_0.4413.png
                gene_name: FAM21C
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 31 percent done.
FAM3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
FAM3C   10000 perm   2 sec   (6302 perm/sec)   p_kst 3.421000e-01   p_cons 6.510000e-02   p_joint 3.309000e-01

Joint ci ratio: 5.736144e-02	ci left: 1.838418e-01	ci right 1.947487e-01	k: 3785	n:20000
Cons ci ratio: 1.041443e-01	ci left: 6.269489e-02	ci right 6.963189e-02	k: 1322	n:20000
KS ci ratio: 3.810856e-02	ci left: 3.393554e-01	ci right 3.525894e-01	k: 6919	n:20000
FAM3C   20000 perm   4 sec   (5488 perm/sec)   p_kst 3.459500e-01   p_cons 6.610000e-02   p_joint 1.892500e-01

Joint ci ratio: 4.950549e-02	ci left: 1.685699e-01	ci right 1.771602e-01	k: 5185	n:30000
Cons ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
KS ci ratio: 3.120738e-02	ci left: 3.392541e-01	ci right 3.500427e-01	k: 10339	n:30000
FAM3C   30000 perm   6 sec   (5292 perm/sec)   p_kst 3.446333e-01   p_cons 6.473333e-02   p_joint 1.728333e-01

Outputting figure to mutsig2_images.part000000000061/FAM3C.5_720_30000_0.34463_0.064733_0.17283.png
                gene_name: FAM3C
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
FAM46C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
Cons ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
KS ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
FAM46C   10000 perm   2 sec   (6100 perm/sec)   p_kst 1.389000e-01   p_cons 7.810000e-02   p_joint 1.350000e-01

Joint ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
Cons ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
KS ci ratio: 7.022260e-02	ci left: 1.300461e-01	ci right 1.395604e-01	k: 2695	n:20000
FAM46C   20000 perm   4 sec   (5448 perm/sec)   p_kst 1.347500e-01   p_cons 7.865000e-02   p_joint 7.390000e-02

Outputting figure to mutsig2_images.part000000000061/FAM46C.5_1180_20000_0.13475_0.07865_0.0739.png
                gene_name: FAM46C
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.078 

Current progress: 35 percent done.
FAM46D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
KS ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
FAM46D   10000 perm   2 sec   (5302 perm/sec)   p_kst 8.217000e-01   p_cons 7.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM46D.5_1174_10000_0.8217_0.7552_1.png
                gene_name: FAM46D
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
FAM170A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
KS ci ratio: 2.030862e-02	ci left: 7.802612e-01	ci right 7.963705e-01	k: 7884	n:10000
FAM170A   10000 perm   2 sec   (5529 perm/sec)   p_kst 7.884000e-01   p_cons 9.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM170A.4_1006_10000_0.7884_0.9211_1.png
                gene_name: FAM170A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
FAM188B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
Cons ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
KS ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
FAM188B   10000 perm   2 sec   (5151 perm/sec)   p_kst 5.122000e-01   p_cons 5.785000e-01   p_joint 7.241000e-01

Outputting figure to mutsig2_images.part000000000061/FAM188B.4_2346_10000_0.5122_0.5785_0.7241.png
                gene_name: FAM188B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 41 percent done.
FAM20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KS ci ratio: 2.437178e-02	ci left: 7.122978e-01	ci right 7.299732e-01	k: 7212	n:10000
FAM20B   10000 perm   2 sec   (5269 perm/sec)   p_kst 7.212000e-01   p_cons 1.142000e-01   p_joint 4.514000e-01

Joint ci ratio: 2.228363e-02	ci left: 6.005920e-01	ci right 6.141768e-01	k: 12148	n:20000
Cons ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
KS ci ratio: 1.756198e-02	ci left: 7.072286e-01	ci right 7.198093e-01	k: 14271	n:20000
FAM20B   20000 perm   4 sec   (4871 perm/sec)   p_kst 7.135500e-01   p_cons 1.140500e-01   p_joint 6.074000e-01

Outputting figure to mutsig2_images.part000000000061/FAM20B.4_1258_20000_0.71355_0.11405_0.6074.png
                gene_name: FAM20B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 43 percent done.
FAM46A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
Cons ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KS ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
FAM46A   10000 perm   2 sec   (6116 perm/sec)   p_kst 4.035000e-01   p_cons 2.406000e-01   p_joint 4.170000e-01

Outputting figure to mutsig2_images.part000000000061/FAM46A.4_1337_10000_0.4035_0.2406_0.417.png
                gene_name: FAM46A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 45 percent done.
FAM49A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
Cons ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
KS ci ratio: 1.387633e-01	ci left: 6.875045e-02	ci right 7.909941e-02	k: 738	n:10000
FAM49A   10000 perm   2 sec   (6420 perm/sec)   p_kst 7.380000e-02   p_cons 9.274000e-01   p_joint 1.043000e-01

Joint ci ratio: 8.607760e-02	ci left: 8.989170e-02	ci right 9.802679e-02	k: 1878	n:20000
Cons ci ratio: 7.863302e-03	ci left: 9.218248e-01	ci right 9.291510e-01	k: 18511	n:20000
KS ci ratio: 9.769493e-02	ci left: 7.084903e-02	ci right 7.817525e-02	k: 1489	n:20000
FAM49A   20000 perm   4 sec   (5604 perm/sec)   p_kst 7.445000e-02   p_cons 9.255500e-01   p_joint 9.390000e-02

Outputting figure to mutsig2_images.part000000000061/FAM49A.4_1012_20000_0.07445_0.92555_0.0939.png
                gene_name: FAM49A
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 47 percent done.
FAM168B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
KS ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
FAM168B   10000 perm   2 sec   (6217 perm/sec)   p_kst 6.486000e-01   p_cons 3.708000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000061/FAM168B.3_608_10000_0.6486_0.3708_0.6995.png
                gene_name: FAM168B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 49 percent done.
FAM179A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
Cons ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
KS ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
FAM179A   10000 perm   2 sec   (5181 perm/sec)   p_kst 9.465000e-01   p_cons 2.090000e-02   p_joint 1.373000e-01

Joint ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
Cons ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
KS ci ratio: 6.543524e-03	ci left: 9.440614e-01	ci right 9.503078e-01	k: 18945	n:20000
FAM179A   20000 perm   4 sec   (4602 perm/sec)   p_kst 9.472500e-01   p_cons 2.085000e-02   p_joint 7.995000e-02

Joint ci ratio: 7.773835e-02	ci left: 7.508792e-02	ci right 8.119407e-02	k: 2343	n:30000
Cons ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
KS ci ratio: 5.389130e-03	ci left: 9.437571e-01	ci right 9.488894e-01	k: 28391	n:30000
FAM179A   30000 perm   7 sec   (4410 perm/sec)   p_kst 9.463667e-01   p_cons 2.070000e-02   p_joint 7.810000e-02

Joint ci ratio: 6.198343e-02	ci left: 8.807550e-02	ci right 9.373406e-02	k: 3635	n:40000
Cons ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
KS ci ratio: 4.673346e-03	ci left: 9.439693e-01	ci right 9.484156e-01	k: 37849	n:40000
FAM179A   40000 perm   9 sec   (4284 perm/sec)   p_kst 9.462250e-01   p_cons 2.150000e-02   p_joint 9.087500e-02

Joint ci ratio: 6.007176e-02	ci left: 7.611760e-02	ci right 8.085147e-02	k: 3923	n:50000
Cons ci ratio: 1.191751e-01	ci left: 1.991639e-02	ci right 2.245963e-02	k: 1058	n:50000
KS ci ratio: 4.204599e-03	ci left: 9.435963e-01	ci right 9.475917e-01	k: 47281	n:50000
FAM179A   50000 perm   12 sec   (4180 perm/sec)   p_kst 9.456200e-01   p_cons 2.116000e-02   p_joint 7.846000e-02

Joint ci ratio: 5.811560e-02	ci left: 6.843130e-02	ci right 7.254370e-02	k: 4228	n:60000
Cons ci ratio: 1.089582e-01	ci left: 1.996491e-02	ci right 2.228173e-02	k: 1266	n:60000
KS ci ratio: 3.856907e-03	ci left: 9.432643e-01	ci right 9.469258e-01	k: 56707	n:60000
FAM179A   60000 perm   15 sec   (4082 perm/sec)   p_kst 9.451167e-01   p_cons 2.110000e-02   p_joint 7.046667e-02

Joint ci ratio: 5.436889e-02	ci left: 6.724601e-02	ci right 7.101837e-02	k: 4838	n:70000
Cons ci ratio: 1.002254e-01	ci left: 2.031283e-02	ci right 2.246996e-02	k: 1496	n:70000
KS ci ratio: 3.552600e-03	ci left: 9.439376e-01	ci right 9.473110e-01	k: 66195	n:70000
FAM179A   70000 perm   18 sec   (3996 perm/sec)   p_kst 9.456429e-01   p_cons 2.137143e-02   p_joint 6.911429e-02

Joint ci ratio: 4.344575e-02	ci left: 9.035233e-02	ci right 9.437729e-02	k: 7388	n:80000
Cons ci ratio: 9.366452e-02	ci left: 2.042055e-02	ci right 2.243936e-02	k: 1713	n:80000
KS ci ratio: 3.332564e-03	ci left: 9.437525e-01	ci right 9.469151e-01	k: 75628	n:80000
FAM179A   80000 perm   20 sec   (3923 perm/sec)   p_kst 9.453500e-01   p_cons 2.141250e-02   p_joint 9.235000e-02

Outputting figure to mutsig2_images.part000000000061/FAM179A.3_3136_80000_0.94535_0.021413_0.09235.png
                gene_name: FAM179A
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 51 percent done.
FAM181A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
Cons ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
FAM181A   10000 perm   2 sec   (6378 perm/sec)   p_kst 4.553000e-01   p_cons 1.630000e-02   p_joint 9.710000e-02

Joint ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
Cons ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
KS ci ratio: 3.023311e-02	ci left: 4.497283e-01	ci right 4.635843e-01	k: 9133	n:20000
FAM181A   20000 perm   4 sec   (5587 perm/sec)   p_kst 4.566500e-01   p_cons 1.475000e-02   p_joint 5.905000e-02

Joint ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
Cons ci ratio: 1.863617e-01	ci left: 1.317781e-02	ci right 1.591739e-02	k: 435	n:30000
KS ci ratio: 2.525825e-02	ci left: 4.396649e-01	ci right 4.509457e-01	k: 13359	n:30000
FAM181A   30000 perm   6 sec   (5275 perm/sec)   p_kst 4.453000e-01   p_cons 1.450000e-02   p_joint 5.180000e-02

Joint ci ratio: 8.366497e-02	ci left: 4.984426e-02	ci right 5.422106e-02	k: 2080	n:40000
Cons ci ratio: 1.521423e-01	ci left: 1.508179e-02	ci right 1.758914e-02	k: 652	n:40000
KS ci ratio: 2.201462e-02	ci left: 4.372748e-01	ci right 4.470336e-01	k: 17686	n:40000
FAM181A   40000 perm   8 sec   (5092 perm/sec)   p_kst 4.421500e-01   p_cons 1.630000e-02   p_joint 5.200000e-02

Joint ci ratio: 6.453509e-02	ci left: 6.649798e-02	ci right 7.095225e-02	k: 3435	n:50000
Cons ci ratio: 1.341106e-01	ci left: 1.567226e-02	ci right 1.794434e-02	k: 839	n:50000
KS ci ratio: 1.970941e-02	ci left: 4.373208e-01	ci right 4.460460e-01	k: 22084	n:50000
FAM181A   50000 perm   10 sec   (4950 perm/sec)   p_kst 4.416800e-01   p_cons 1.678000e-02   p_joint 6.870000e-02

Joint ci ratio: 6.921170e-02	ci left: 4.899081e-02	ci right 5.251947e-02	k: 3044	n:60000
Cons ci ratio: 1.296088e-01	ci left: 1.404257e-02	ci right 1.600474e-02	k: 900	n:60000
KS ci ratio: 1.795449e-02	ci left: 4.387368e-01	ci right 4.467021e-01	k: 26563	n:60000
FAM181A   60000 perm   12 sec   (4834 perm/sec)   p_kst 4.427167e-01   p_cons 1.500000e-02   p_joint 5.073333e-02

Joint ci ratio: 7.492844e-02	ci left: 3.621689e-02	ci right 3.905018e-02	k: 2633	n:70000
Cons ci ratio: 1.199463e-01	ci left: 1.412641e-02	ci right 1.594269e-02	k: 1051	n:70000
KS ci ratio: 1.665071e-02	ci left: 4.382022e-01	ci right 4.455741e-01	k: 30932	n:70000
FAM181A   70000 perm   15 sec   (4713 perm/sec)   p_kst 4.418857e-01   p_cons 1.501429e-02   p_joint 3.761429e-02

Joint ci ratio: 7.226601e-02	ci left: 3.419153e-02	ci right 3.676730e-02	k: 2837	n:80000
Cons ci ratio: 1.117890e-01	ci left: 1.429062e-02	ci right 1.599481e-02	k: 1210	n:80000
KS ci ratio: 1.556702e-02	ci left: 4.387044e-01	ci right 4.455998e-01	k: 35372	n:80000
FAM181A   80000 perm   17 sec   (4601 perm/sec)   p_kst 4.421500e-01   p_cons 1.512500e-02   p_joint 3.546250e-02

Joint ci ratio: 6.514279e-02	ci left: 3.741640e-02	ci right 3.994678e-02	k: 3480	n:90000
Cons ci ratio: 1.052146e-01	ci left: 1.438913e-02	ci right 1.599790e-02	k: 1366	n:90000
KS ci ratio: 1.466768e-02	ci left: 4.392070e-01	ci right 4.457078e-01	k: 39821	n:90000
FAM181A   90000 perm   20 sec   (4502 perm/sec)   p_kst 4.424556e-01   p_cons 1.517778e-02   p_joint 3.866667e-02

Joint ci ratio: 6.647005e-02	ci left: 3.249169e-02	ci right 3.473547e-02	k: 3360	n:100000
Cons ci ratio: 9.981167e-02	ci left: 1.443127e-02	ci right 1.595704e-02	k: 1518	n:100000
KS ci ratio: 1.391432e-02	ci left: 4.393983e-01	ci right 4.455650e-01	k: 44248	n:100000
FAM181A   100000 perm   23 sec   (4414 perm/sec)   p_kst 4.424800e-01   p_cons 1.518000e-02   p_joint 3.360000e-02

Outputting figure to mutsig2_images.part000000000061/FAM181A.3_1073_100000_0.44248_0.01518_0.0336.png
                gene_name: FAM181A
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 53 percent done.
FAM186B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
FAM186B   10000 perm   2 sec   (5704 perm/sec)   p_kst 9.806000e-01   p_cons 4.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM186B.3_2710_10000_0.9806_0.485_1.png
                gene_name: FAM186B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
FAM190A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
Cons ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
KS ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
FAM190A   10000 perm   2 sec   (5136 perm/sec)   p_kst 2.496000e-01   p_cons 5.650000e-01   p_joint 4.589000e-01

Outputting figure to mutsig2_images.part000000000061/FAM190A.3_2771_10000_0.2496_0.565_0.4589.png
                gene_name: FAM190A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 57 percent done.
FAM193A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
FAM193A   10000 perm   2 sec   (4539 perm/sec)   p_kst 3.274000e-01   p_cons 2.649000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000061/FAM193A.3_3743_10000_0.3274_0.2649_0.2918.png
                gene_name: FAM193A
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 59 percent done.
FAM198B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
FAM198B   10000 perm   2 sec   (5617 perm/sec)   p_kst 2.161000e-01   p_cons 3.100000e-03   p_joint 7.900000e-03

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
KS ci ratio: 5.255950e-02	ci left: 2.118484e-01	ci right 2.233338e-01	k: 4351	n:20000
FAM198B   20000 perm   4 sec   (5059 perm/sec)   p_kst 2.175500e-01   p_cons 3.200000e-03   p_joint 3.675000e-02

Joint ci ratio: 1.573553e-01	ci left: 1.867001e-02	ci right 2.189050e-02	k: 607	n:30000
Cons ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
KS ci ratio: 4.284771e-02	ci left: 2.134379e-01	ci right 2.228168e-01	k: 6543	n:30000
FAM198B   30000 perm   6 sec   (4826 perm/sec)   p_kst 2.181000e-01   p_cons 1.900000e-03   p_joint 2.023333e-02

Joint ci ratio: 1.620085e-01	ci left: 1.325537e-02	ci right 1.561589e-02	k: 576	n:40000
Cons ci ratio: 4.522124e-01	ci left: 1.452919e-03	ci right 2.321957e-03	k: 74	n:40000
KS ci ratio: 3.693498e-02	ci left: 2.156504e-01	ci right 2.237903e-01	k: 8788	n:40000
FAM198B   40000 perm   9 sec   (4676 perm/sec)   p_kst 2.197000e-01   p_cons 1.850000e-03   p_joint 1.440000e-02

Joint ci ratio: 1.335458e-01	ci left: 1.580765e-02	ci right 1.808893e-02	k: 846	n:50000
Cons ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
KS ci ratio: 3.324177e-02	ci left: 2.139699e-01	ci right 2.212229e-01	k: 10879	n:50000
FAM198B   50000 perm   11 sec   (4551 perm/sec)   p_kst 2.175800e-01   p_cons 1.720000e-03   p_joint 1.692000e-02

Joint ci ratio: 1.411947e-01	ci left: 1.178714e-02	ci right 1.359378e-02	k: 760	n:60000
Cons ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
KS ci ratio: 3.038116e-02	ci left: 2.138895e-01	ci right 2.205046e-01	k: 13031	n:60000
FAM198B   60000 perm   14 sec   (4439 perm/sec)   p_kst 2.171833e-01   p_cons 1.716667e-03   p_joint 1.266667e-02

Joint ci ratio: 1.028539e-01	ci left: 1.928200e-02	ci right 2.138660e-02	k: 1422	n:70000
Cons ci ratio: 3.517120e-01	ci left: 1.460564e-03	ci right 2.096164e-03	k: 123	n:70000
KS ci ratio: 2.811687e-02	ci left: 2.142637e-01	ci right 2.203883e-01	k: 15212	n:70000
FAM198B   70000 perm   16 sec   (4347 perm/sec)   p_kst 2.173143e-01   p_cons 1.757143e-03   p_joint 2.031429e-02

Joint ci ratio: 1.156302e-01	ci left: 1.334297e-02	ci right 1.499254e-02	k: 1132	n:80000
Cons ci ratio: 3.321990e-01	ci left: 1.449402e-03	ci right 2.037678e-03	k: 138	n:80000
KS ci ratio: 2.636613e-02	ci left: 2.136252e-01	ci right 2.193454e-01	k: 17318	n:80000
FAM198B   80000 perm   19 sec   (4255 perm/sec)   p_kst 2.164750e-01   p_cons 1.725000e-03   p_joint 1.415000e-02

Joint ci ratio: 1.116977e-01	ci left: 1.274540e-02	ci right 1.426397e-02	k: 1214	n:90000
Cons ci ratio: 3.135773e-01	ci left: 1.461951e-03	ci right 2.015403e-03	k: 155	n:90000
KS ci ratio: 2.487443e-02	ci left: 2.135695e-01	ci right 2.189599e-01	k: 19463	n:90000
FAM198B   90000 perm   22 sec   (4171 perm/sec)   p_kst 2.162556e-01   p_cons 1.722222e-03   p_joint 1.348889e-02

Joint ci ratio: 1.048302e-01	ci left: 1.306659e-02	ci right 1.452181e-02	k: 1378	n:100000
Cons ci ratio: 2.977727e-01	ci left: 1.472727e-03	ci right 1.996853e-03	k: 172	n:100000
KS ci ratio: 2.357131e-02	ci left: 2.140900e-01	ci right 2.192065e-01	k: 21664	n:100000
FAM198B   100000 perm   24 sec   (4092 perm/sec)   p_kst 2.166400e-01   p_cons 1.720000e-03   p_joint 1.378000e-02

Joint ci ratio: 9.601337e-02	ci left: 1.421006e-02	ci right 1.565204e-02	k: 1641	n:110000
Cons ci ratio: 2.841397e-01	ci left: 1.482116e-03	ci right 1.981108e-03	k: 189	n:110000
KS ci ratio: 2.251205e-02	ci left: 2.136435e-01	ci right 2.185169e-01	k: 23768	n:110000
FAM198B   110000 perm   27 sec   (4017 perm/sec)   p_kst 2.160727e-01   p_cons 1.718182e-03   p_joint 1.491818e-02

Joint ci ratio: 9.882572e-02	ci left: 1.230169e-02	ci right 1.358868e-02	k: 1552	n:120000
Cons ci ratio: 2.689877e-01	ci left: 1.529240e-03	ci right 2.012016e-03	k: 211	n:120000
KS ci ratio: 2.153819e-02	ci left: 2.139898e-01	ci right 2.186572e-01	k: 25958	n:120000
FAM198B   120000 perm   30 sec   (3946 perm/sec)   p_kst 2.163167e-01   p_cons 1.758333e-03   p_joint 1.293333e-02

Joint ci ratio: 8.688846e-02	ci left: 1.474514e-02	ci right 1.609199e-02	k: 2003	n:130000
Cons ci ratio: 2.549376e-01	ci left: 1.584113e-03	ci right 2.053941e-03	k: 235	n:130000
KS ci ratio: 2.072627e-02	ci left: 2.135433e-01	ci right 2.180232e-01	k: 28051	n:130000
FAM198B   130000 perm   34 sec   (3876 perm/sec)   p_kst 2.157769e-01   p_cons 1.807692e-03   p_joint 1.540769e-02

Joint ci ratio: 8.798980e-02	ci left: 1.336312e-02	ci right 1.459999e-02	k: 1956	n:140000
Cons ci ratio: 2.477002e-01	ci left: 1.564662e-03	ci right 2.013519e-03	k: 249	n:140000
KS ci ratio: 1.998788e-02	ci left: 2.133628e-01	ci right 2.176776e-01	k: 30172	n:140000
FAM198B   140000 perm   37 sec   (3810 perm/sec)   p_kst 2.155143e-01   p_cons 1.778571e-03   p_joint 1.397143e-02

Joint ci ratio: 8.731093e-02	ci left: 1.268070e-02	ci right 1.384489e-02	k: 1988	n:150000
Cons ci ratio: 2.415048e-01	ci left: 1.541705e-03	ci right 1.971255e-03	k: 262	n:150000
KS ci ratio: 1.932316e-02	ci left: 2.132088e-01	ci right 2.173755e-01	k: 32293	n:150000
FAM198B   150000 perm   40 sec   (3746 perm/sec)   p_kst 2.152867e-01   p_cons 1.746667e-03   p_joint 1.325333e-02

Joint ci ratio: 8.848063e-02	ci left: 1.158224e-02	ci right 1.266055e-02	k: 1938	n:160000
Cons ci ratio: 2.315865e-01	ci left: 1.580586e-03	ci right 2.000298e-03	k: 285	n:160000
KS ci ratio: 1.868536e-02	ci left: 2.137116e-01	ci right 2.177487e-01	k: 34516	n:160000
FAM198B   160000 perm   43 sec   (3685 perm/sec)   p_kst 2.157250e-01   p_cons 1.781250e-03   p_joint 1.211250e-02

Joint ci ratio: 9.279443e-02	ci left: 9.905933e-03	ci right 1.087558e-02	k: 1765	n:170000
Cons ci ratio: 2.246256e-01	ci left: 1.587444e-03	ci right 1.994554e-03	k: 303	n:170000
KS ci ratio: 1.812976e-02	ci left: 2.137291e-01	ci right 2.176453e-01	k: 36666	n:170000
FAM198B   170000 perm   47 sec   (3626 perm/sec)   p_kst 2.156824e-01   p_cons 1.782353e-03   p_joint 1.038235e-02

Joint ci ratio: 9.007982e-02	ci left: 9.941891e-03	ci right 1.088509e-02	k: 1873	n:180000
Cons ci ratio: 2.189392e-01	ci left: 1.583204e-03	ci right 1.977565e-03	k: 319	n:180000
KS ci ratio: 1.760101e-02	ci left: 2.141284e-01	ci right 2.179363e-01	k: 38885	n:180000
FAM198B   180000 perm   50 sec   (3569 perm/sec)   p_kst 2.160278e-01   p_cons 1.772222e-03   p_joint 1.040556e-02

Joint ci ratio: 8.708114e-02	ci left: 1.009287e-02	ci right 1.101689e-02	k: 2004	n:190000
Cons ci ratio: 2.124010e-01	ci left: 1.599457e-03	ci right 1.984420e-03	k: 339	n:190000
KS ci ratio: 1.711809e-02	ci left: 2.144452e-01	ci right 2.181530e-01	k: 41096	n:190000
FAM198B   190000 perm   54 sec   (3517 perm/sec)   p_kst 2.162947e-01   p_cons 1.784211e-03   p_joint 1.054737e-02

Joint ci ratio: 8.213757e-02	ci left: 1.079727e-02	ci right 1.172698e-02	k: 2251	n:200000
Cons ci ratio: 2.069924e-01	ci left: 1.604759e-03	ci right 1.979917e-03	k: 357	n:200000
KS ci ratio: 1.668589e-02	ci left: 2.144673e-01	ci right 2.180809e-01	k: 43254	n:200000
FAM198B   200000 perm   58 sec   (3467 perm/sec)   p_kst 2.162700e-01   p_cons 1.785000e-03   p_joint 1.125500e-02

Joint ci ratio: 7.668416e-02	ci left: 1.181893e-02	ci right 1.276603e-02	k: 2580	n:210000
Cons ci ratio: 2.025173e-01	ci left: 1.600626e-03	ci right 1.965728e-03	k: 373	n:210000
KS ci ratio: 1.627776e-02	ci left: 2.146356e-01	ci right 2.181627e-01	k: 45443	n:210000
FAM198B   210000 perm   61 sec   (3418 perm/sec)   p_kst 2.163952e-01   p_cons 1.776190e-03   p_joint 1.228571e-02

Joint ci ratio: 7.722217e-02	ci left: 1.112998e-02	ci right 1.202841e-02	k: 2546	n:220000
Cons ci ratio: 1.978130e-01	ci left: 1.605588e-03	ci right 1.962289e-03	k: 391	n:220000
KS ci ratio: 1.589115e-02	ci left: 2.149391e-01	ci right 2.183866e-01	k: 47665	n:220000
FAM198B   220000 perm   65 sec   (3370 perm/sec)   p_kst 2.166591e-01   p_cons 1.777273e-03   p_joint 1.157273e-02

Joint ci ratio: 7.598475e-02	ci left: 1.100426e-02	ci right 1.187768e-02	k: 2630	n:230000
Cons ci ratio: 1.931861e-01	ci left: 1.614347e-03	ci right 1.963618e-03	k: 410	n:230000
KS ci ratio: 1.555134e-02	ci left: 2.147705e-01	ci right 2.181410e-01	k: 49784	n:230000
FAM198B   230000 perm   69 sec   (3324 perm/sec)   p_kst 2.164522e-01   p_cons 1.782609e-03   p_joint 1.143478e-02

Joint ci ratio: 7.094084e-02	ci left: 1.211663e-02	ci right 1.301187e-02	k: 3014	n:240000
Cons ci ratio: 1.888694e-01	ci left: 1.622464e-03	ci right 1.964748e-03	k: 429	n:240000
KS ci ratio: 1.522533e-02	ci left: 2.147747e-01	ci right 2.180739e-01	k: 51941	n:240000
FAM198B   240000 perm   73 sec   (3278 perm/sec)   p_kst 2.164208e-01   p_cons 1.787500e-03   p_joint 1.255833e-02

Joint ci ratio: 7.098273e-02	ci left: 1.162400e-02	ci right 1.248337e-02	k: 3012	n:250000
Cons ci ratio: 1.852434e-01	ci left: 1.622381e-03	ci right 1.957339e-03	k: 446	n:250000
KS ci ratio: 1.490387e-02	ci left: 2.151222e-01	ci right 2.183564e-01	k: 54184	n:250000
FAM198B   250000 perm   77 sec   (3235 perm/sec)   p_kst 2.167360e-01   p_cons 1.784000e-03   p_joint 1.204800e-02

Joint ci ratio: 7.055064e-02	ci left: 1.132043e-02	ci right 1.215205e-02	k: 3050	n:260000
Cons ci ratio: 1.810386e-01	ci left: 1.637049e-03	ci right 1.966523e-03	k: 467	n:260000
KS ci ratio: 1.461501e-02	ci left: 2.151406e-01	ci right 2.183118e-01	k: 56348	n:260000
FAM198B   260000 perm   82 sec   (3190 perm/sec)   p_kst 2.167231e-01   p_cons 1.796154e-03   p_joint 1.173077e-02

Joint ci ratio: 6.838874e-02	ci left: 1.161089e-02	ci right 1.243667e-02	k: 3245	n:270000
Cons ci ratio: 1.774716e-01	ci left: 1.643632e-03	ci right 1.967213e-03	k: 486	n:270000
KS ci ratio: 1.435203e-02	ci left: 2.149292e-01	ci right 2.180398e-01	k: 58450	n:270000
FAM198B   270000 perm   86 sec   (3146 perm/sec)   p_kst 2.164815e-01   p_cons 1.800000e-03   p_joint 1.201852e-02

Joint ci ratio: 6.591133e-02	ci left: 1.206364e-02	ci right 1.288936e-02	k: 3492	n:280000
Cons ci ratio: 1.729133e-01	ci left: 1.673719e-03	ci right 1.993877e-03	k: 512	n:280000
KS ci ratio: 1.409636e-02	ci left: 2.148866e-01	ci right 2.179407e-01	k: 60595	n:280000
FAM198B   280000 perm   90 sec   (3104 perm/sec)   p_kst 2.164107e-01   p_cons 1.828571e-03   p_joint 1.247143e-02

Joint ci ratio: 6.528545e-02	ci left: 1.187825e-02	ci right 1.268327e-02	k: 3560	n:290000
Cons ci ratio: 1.701180e-01	ci left: 1.672108e-03	ci right 1.986257e-03	k: 529	n:290000
KS ci ratio: 1.384713e-02	ci left: 2.150124e-01	ci right 2.180139e-01	k: 62788	n:290000
FAM198B   290000 perm   95 sec   (3065 perm/sec)   p_kst 2.165103e-01   p_cons 1.824138e-03   p_joint 1.227586e-02

Joint ci ratio: 6.456891e-02	ci left: 1.174462e-02	ci right 1.253151e-02	k: 3640	n:300000
Cons ci ratio: 1.673008e-01	ci left: 1.673838e-03	ci right 1.982579e-03	k: 547	n:300000
KS ci ratio: 1.362136e-02	ci left: 2.148644e-01	ci right 2.178145e-01	k: 64901	n:300000
FAM198B   300000 perm   99 sec   (3026 perm/sec)   p_kst 2.163367e-01   p_cons 1.823333e-03   p_joint 1.213333e-02

Joint ci ratio: 6.321659e-02	ci left: 1.186414e-02	ci right 1.264179e-02	k: 3797	n:310000
Cons ci ratio: 1.631813e-01	ci left: 1.706433e-03	ci right 2.012676e-03	k: 575	n:310000
KS ci ratio: 1.339889e-02	ci left: 2.149128e-01	ci right 2.178150e-01	k: 67072	n:310000
FAM198B   310000 perm   104 sec   (2987 perm/sec)   p_kst 2.163613e-01   p_cons 1.854839e-03   p_joint 1.224839e-02

Joint ci ratio: 6.065446e-02	ci left: 1.249341e-02	ci right 1.327795e-02	k: 4122	n:320000
Cons ci ratio: 1.606899e-01	ci left: 1.707078e-03	ci right 2.008308e-03	k: 593	n:320000
KS ci ratio: 1.318224e-02	ci left: 2.150803e-01	ci right 2.179374e-01	k: 69282	n:320000
FAM198B   320000 perm   108 sec   (2950 perm/sec)   p_kst 2.165063e-01   p_cons 1.853125e-03   p_joint 1.288125e-02

Joint ci ratio: 5.978428e-02	ci left: 1.247596e-02	ci right 1.324778e-02	k: 4243	n:330000
Cons ci ratio: 1.579221e-01	ci left: 1.716449e-03	ci right 2.013620e-03	k: 614	n:330000
KS ci ratio: 1.298528e-02	ci left: 2.149900e-01	ci right 2.178029e-01	k: 71410	n:330000
FAM198B   330000 perm   113 sec   (2915 perm/sec)   p_kst 2.163939e-01   p_cons 1.860606e-03   p_joint 1.285758e-02

Joint ci ratio: 5.888903e-02	ci left: 1.248570e-02	ci right 1.324616e-02	k: 4373	n:340000
Cons ci ratio: 1.557840e-01	ci left: 1.714002e-03	ci right 2.006357e-03	k: 631	n:340000
KS ci ratio: 1.279511e-02	ci left: 2.149522e-01	ci right 2.177232e-01	k: 73554	n:340000
FAM198B   340000 perm   118 sec   (2881 perm/sec)   p_kst 2.163353e-01   p_cons 1.855882e-03   p_joint 1.286176e-02

Joint ci ratio: 5.491725e-02	ci left: 1.395436e-02	ci right 1.474514e-02	k: 5021	n:350000
Cons ci ratio: 1.540877e-01	ci left: 1.703479e-03	ci right 1.990584e-03	k: 645	n:350000
KS ci ratio: 1.261253e-02	ci left: 2.149312e-01	ci right 2.176621e-01	k: 75703	n:350000
FAM198B   350000 perm   123 sec   (2846 perm/sec)   p_kst 2.162943e-01   p_cons 1.842857e-03   p_joint 1.434571e-02

Joint ci ratio: 5.328948e-02	ci left: 1.441355e-02	ci right 1.520539e-02	k: 5330	n:360000
Cons ci ratio: 1.514149e-01	ci left: 1.717608e-03	ci right 2.001617e-03	k: 668	n:360000
KS ci ratio: 1.243622e-02	ci left: 2.149477e-01	ci right 2.176402e-01	k: 77865	n:360000
FAM198B   360000 perm   128 sec   (2812 perm/sec)   p_kst 2.162917e-01   p_cons 1.855556e-03   p_joint 1.480556e-02

Joint ci ratio: 5.165373e-02	ci left: 1.493096e-02	ci right 1.572530e-02	k: 5670	n:370000
Cons ci ratio: 1.494182e-01	ci left: 1.718004e-03	ci right 1.997998e-03	k: 686	n:370000
KS ci ratio: 1.226534e-02	ci left: 2.150120e-01	ci right 2.176681e-01	k: 80045	n:370000
FAM198B   370000 perm   133 sec   (2779 perm/sec)   p_kst 2.163378e-01   p_cons 1.854054e-03   p_joint 1.532432e-02

Joint ci ratio: 5.182224e-02	ci left: 1.444964e-02	ci right 1.522095e-02	k: 5636	n:380000
Cons ci ratio: 1.471851e-01	ci left: 1.726006e-03	ci right 2.002731e-03	k: 707	n:380000
KS ci ratio: 1.209869e-02	ci left: 2.151467e-01	ci right 2.177681e-01	k: 82253	n:380000
FAM198B   380000 perm   138 sec   (2747 perm/sec)   p_kst 2.164553e-01   p_cons 1.860526e-03   p_joint 1.483158e-02

Joint ci ratio: 5.143557e-02	ci left: 1.429677e-02	ci right 1.505406e-02	k: 5722	n:390000
Cons ci ratio: 1.456510e-01	ci left: 1.718802e-03	ci right 1.991249e-03	k: 722	n:390000
KS ci ratio: 1.194118e-02	ci left: 2.152031e-01	ci right 2.177908e-01	k: 84433	n:390000
FAM198B   390000 perm   144 sec   (2715 perm/sec)   p_kst 2.164949e-01   p_cons 1.851282e-03   p_joint 1.467179e-02

Joint ci ratio: 5.136780e-02	ci left: 1.398125e-02	ci right 1.472081e-02	k: 5739	n:400000
Cons ci ratio: 1.435803e-01	ci left: 1.726433e-03	ci right 1.995865e-03	k: 743	n:400000
KS ci ratio: 1.178784e-02	ci left: 2.153093e-01	ci right 2.178648e-01	k: 86634	n:400000
FAM198B   400000 perm   149 sec   (2684 perm/sec)   p_kst 2.165850e-01   p_cons 1.857500e-03   p_joint 1.434750e-02

Joint ci ratio: 4.532776e-02	ci left: 1.750840e-02	ci right 1.832282e-02	k: 7344	n:410000
Cons ci ratio: 1.417812e-01	ci left: 1.729012e-03	ci right 1.995180e-03	k: 762	n:410000
KS ci ratio: 1.163734e-02	ci left: 2.154957e-01	ci right 2.180205e-01	k: 88870	n:410000
FAM198B   410000 perm   154 sec   (2654 perm/sec)   p_kst 2.167561e-01   p_cons 1.858537e-03   p_joint 1.791220e-02

Joint ci ratio: 4.481871e-02	ci left: 1.748702e-02	ci right 1.829107e-02	k: 7512	n:420000
Cons ci ratio: 1.403181e-01	ci left: 1.724596e-03	ci right 1.987115e-03	k: 778	n:420000
KS ci ratio: 1.149600e-02	ci left: 2.155688e-01	ci right 2.180637e-01	k: 91062	n:420000
FAM198B   420000 perm   160 sec   (2624 perm/sec)   p_kst 2.168143e-01   p_cons 1.852381e-03   p_joint 1.788571e-02

Joint ci ratio: 4.753743e-02	ci left: 1.519724e-02	ci right 1.593955e-02	k: 6693	n:430000
Cons ci ratio: 1.382044e-01	ci left: 1.738359e-03	ci right 1.998659e-03	k: 802	n:430000
KS ci ratio: 1.135914e-02	ci left: 2.156550e-01	ci right 2.181209e-01	k: 93261	n:430000
FAM198B   430000 perm   166 sec   (2596 perm/sec)   p_kst 2.168860e-01   p_cons 1.865116e-03   p_joint 1.556512e-02

Joint ci ratio: 4.918316e-02	ci left: 1.388166e-02	ci right 1.458385e-02	k: 6261	n:440000
Cons ci ratio: 1.369320e-01	ci left: 1.731768e-03	ci right 1.988499e-03	k: 817	n:440000
KS ci ratio: 1.123036e-02	ci left: 2.156376e-01	ci right 2.180752e-01	k: 95416	n:440000
FAM198B   440000 perm   171 sec   (2568 perm/sec)   p_kst 2.168545e-01   p_cons 1.856818e-03   p_joint 1.422955e-02

Joint ci ratio: 4.864640e-02	ci left: 1.387829e-02	ci right 1.457243e-02	k: 6400	n:450000
Cons ci ratio: 1.356940e-01	ci left: 1.725480e-03	ci right 1.978780e-03	k: 832	n:450000
KS ci ratio: 1.110571e-02	ci left: 2.156256e-01	ci right 2.180358e-01	k: 97573	n:450000
FAM198B   450000 perm   177 sec   (2541 perm/sec)   p_kst 2.168289e-01   p_cons 1.848889e-03   p_joint 1.422222e-02

Joint ci ratio: 4.706498e-02	ci left: 1.450674e-02	ci right 1.520809e-02	k: 6833	n:460000
Cons ci ratio: 1.340149e-01	ci left: 1.732082e-03	ci right 1.982954e-03	k: 853	n:460000
KS ci ratio: 1.098921e-02	ci left: 2.154884e-01	ci right 2.178717e-01	k: 99672	n:460000
FAM198B   460000 perm   183 sec   (2513 perm/sec)   p_kst 2.166783e-01   p_cons 1.854348e-03   p_joint 1.485435e-02

Joint ci ratio: 4.607034e-02	ci left: 1.482059e-02	ci right 1.552157e-02	k: 7129	n:470000
Cons ci ratio: 1.326246e-01	ci left: 1.732250e-03	ci right 1.980338e-03	k: 871	n:470000
KS ci ratio: 1.087275e-02	ci left: 2.154676e-01	ci right 2.178252e-01	k: 101823	n:470000
FAM198B   470000 perm   189 sec   (2487 perm/sec)   p_kst 2.166447e-01   p_cons 1.853191e-03   p_joint 1.516809e-02

Joint ci ratio: 4.556474e-02	ci left: 1.483929e-02	ci right 1.553325e-02	k: 7288	n:480000
Cons ci ratio: 1.307625e-01	ci left: 1.746530e-03	ci right 1.992879e-03	k: 896	n:480000
KS ci ratio: 1.075972e-02	ci left: 2.154541e-01	ci right 2.177869e-01	k: 103977	n:480000
FAM198B   480000 perm   195 sec   (2460 perm/sec)   p_kst 2.166187e-01   p_cons 1.866667e-03   p_joint 1.518333e-02

Joint ci ratio: 4.538267e-02	ci left: 1.465747e-02	ci right 1.534012e-02	k: 7348	n:490000
Cons ci ratio: 1.297545e-01	ci left: 1.738526e-03	ci right 1.981710e-03	k: 910	n:490000
KS ci ratio: 1.065220e-02	ci left: 2.153760e-01	ci right 2.176845e-01	k: 106099	n:490000
FAM198B   490000 perm   201 sec   (2433 perm/sec)   p_kst 2.165286e-01   p_cons 1.857143e-03   p_joint 1.499592e-02

Joint ci ratio: 4.146353e-02	ci left: 1.719773e-02	ci right 1.792787e-02	k: 8780	n:500000
Cons ci ratio: 1.286997e-01	ci left: 1.732785e-03	ci right 1.973046e-03	k: 925	n:500000
KS ci ratio: 1.054945e-02	ci left: 2.152493e-01	ci right 2.175340e-01	k: 108195	n:500000
FAM198B   500000 perm   208 sec   (2408 perm/sec)   p_kst 2.163900e-01   p_cons 1.850000e-03   p_joint 1.756000e-02

Joint ci ratio: 4.458450e-02	ci left: 1.459836e-02	ci right 1.526599e-02	k: 7614	n:510000
Cons ci ratio: 1.278747e-01	ci left: 1.721583e-03	ci right 1.958643e-03	k: 937	n:510000
KS ci ratio: 1.044659e-02	ci left: 2.152255e-01	ci right 2.174876e-01	k: 110341	n:510000
FAM198B   510000 perm   214 sec   (2384 perm/sec)   p_kst 2.163549e-01   p_cons 1.837255e-03   p_joint 1.492941e-02

Joint ci ratio: 4.096356e-02	ci left: 1.695115e-02	ci right 1.766194e-02	k: 8998	n:520000
Cons ci ratio: 1.260720e-01	ci left: 1.738750e-03	ci right 1.974547e-03	k: 964	n:520000
KS ci ratio: 1.034405e-02	ci left: 2.152891e-01	ci right 2.175295e-01	k: 112532	n:520000
FAM198B   520000 perm   220 sec   (2360 perm/sec)   p_kst 2.164077e-01   p_cons 1.853846e-03   p_joint 1.730385e-02

Joint ci ratio: 4.078405e-02	ci left: 1.678255e-02	ci right 1.748312e-02	k: 9079	n:530000
Cons ci ratio: 1.245954e-01	ci left: 1.747980e-03	ci right 1.982047e-03	k: 987	n:530000
KS ci ratio: 1.024600e-02	ci left: 2.152995e-01	ci right 2.175187e-01	k: 114696	n:530000
FAM198B   530000 perm   227 sec   (2338 perm/sec)   p_kst 2.164075e-01   p_cons 1.862264e-03   p_joint 1.713019e-02

Joint ci ratio: 4.042760e-02	ci left: 1.676688e-02	ci right 1.746053e-02	k: 9240	n:540000
Cons ci ratio: 1.234143e-01	ci left: 1.749704e-03	ci right 1.981619e-03	k: 1006	n:540000
KS ci ratio: 1.015069e-02	ci left: 2.153097e-01	ci right 2.175082e-01	k: 116860	n:540000
FAM198B   540000 perm   233 sec   (2313 perm/sec)   p_kst 2.164074e-01   p_cons 1.862963e-03   p_joint 1.711111e-02

Joint ci ratio: 4.043845e-02	ci left: 1.645838e-02	ci right 1.713945e-02	k: 9238	n:550000
Cons ci ratio: 1.223260e-01	ci left: 1.749612e-03	ci right 1.979322e-03	k: 1024	n:550000
KS ci ratio: 1.006139e-02	ci left: 2.152052e-01	ci right 2.173832e-01	k: 118961	n:550000
FAM198B   550000 perm   240 sec   (2290 perm/sec)   p_kst 2.162927e-01   p_cons 1.861818e-03   p_joint 1.679636e-02

Joint ci ratio: 3.965968e-02	ci left: 1.680626e-02	ci right 1.748803e-02	k: 9601	n:560000
Cons ci ratio: 1.217345e-01	ci left: 1.735681e-03	ci right 1.962380e-03	k: 1034	n:560000
KS ci ratio: 9.969368e-03	ci left: 2.152757e-01	ci right 2.174344e-01	k: 121158	n:560000
FAM198B   560000 perm   247 sec   (2269 perm/sec)   p_kst 2.163536e-01   p_cons 1.846429e-03   p_joint 1.714464e-02

Joint ci ratio: 3.930302e-02	ci left: 1.681540e-02	ci right 1.749127e-02	k: 9776	n:570000
Cons ci ratio: 1.206323e-01	ci left: 1.737553e-03	ci right 1.962295e-03	k: 1053	n:570000
KS ci ratio: 9.879770e-03	ci left: 2.153456e-01	ci right 2.174854e-01	k: 123356	n:570000
FAM198B   570000 perm   254 sec   (2248 perm/sec)   p_kst 2.164140e-01   p_cons 1.847368e-03   p_joint 1.715088e-02

Joint ci ratio: 3.897374e-02	ci left: 1.680889e-02	ci right 1.747871e-02	k: 9942	n:580000
Cons ci ratio: 1.198395e-01	ci left: 1.731007e-03	ci right 1.953327e-03	k: 1067	n:580000
KS ci ratio: 9.792296e-03	ci left: 2.154217e-01	ci right 2.175432e-01	k: 125559	n:580000
FAM198B   580000 perm   260 sec   (2227 perm/sec)   p_kst 2.164810e-01   p_cons 1.839655e-03   p_joint 1.714138e-02

Joint ci ratio: 3.927382e-02	ci left: 1.627887e-02	ci right 1.693267e-02	k: 9796	n:590000
Cons ci ratio: 1.184061e-01	ci left: 1.744423e-03	ci right 1.965599e-03	k: 1093	n:590000
KS ci ratio: 9.710985e-03	ci left: 2.153600e-01	ci right 2.174632e-01	k: 127682	n:590000
FAM198B   590000 perm   267 sec   (2207 perm/sec)   p_kst 2.164102e-01   p_cons 1.852542e-03   p_joint 1.660339e-02

Joint ci ratio: 3.913140e-02	ci left: 1.612800e-02	ci right 1.677335e-02	k: 9869	n:600000
Cons ci ratio: 1.174968e-01	ci left: 1.742847e-03	ci right 1.962008e-03	k: 1110	n:600000
KS ci ratio: 9.630388e-03	ci left: 2.153453e-01	ci right 2.174308e-01	k: 129832	n:600000
FAM198B   600000 perm   275 sec   (2185 perm/sec)   p_kst 2.163867e-01   p_cons 1.850000e-03   p_joint 1.644833e-02

Joint ci ratio: 3.915491e-02	ci left: 1.584895e-02	ci right 1.648352e-02	k: 9860	n:610000
Cons ci ratio: 1.166601e-01	ci left: 1.739737e-03	ci right 1.956841e-03	k: 1126	n:610000
KS ci ratio: 9.551443e-03	ci left: 2.153426e-01	ci right 2.174109e-01	k: 131989	n:610000
FAM198B   610000 perm   282 sec   (2165 perm/sec)   p_kst 2.163754e-01   p_cons 1.845902e-03   p_joint 1.616393e-02

Joint ci ratio: 3.904959e-02	ci left: 1.568114e-02	ci right 1.630726e-02	k: 9915	n:620000
Cons ci ratio: 1.157395e-01	ci left: 1.739865e-03	ci right 1.955155e-03	k: 1144	n:620000
KS ci ratio: 9.478509e-03	ci left: 2.151936e-01	ci right 2.172446e-01	k: 134055	n:620000
FAM198B   620000 perm   289 sec   (2145 perm/sec)   p_kst 2.162177e-01   p_cons 1.845161e-03   p_joint 1.599194e-02

Joint ci ratio: 3.872268e-02	ci left: 1.569631e-02	ci right 1.631767e-02	k: 10083	n:630000
Cons ci ratio: 1.148404e-01	ci left: 1.739995e-03	ci right 1.953516e-03	k: 1162	n:630000
KS ci ratio: 9.403035e-03	ci left: 2.151999e-01	ci right 2.172345e-01	k: 136216	n:630000
FAM198B   630000 perm   296 sec   (2126 perm/sec)   p_kst 2.162159e-01   p_cons 1.844444e-03   p_joint 1.600476e-02

Joint ci ratio: 4.088394e-02	ci left: 1.387134e-02	ci right 1.445182e-02	k: 9062	n:640000
Cons ci ratio: 1.139136e-01	ci left: 1.741646e-03	ci right 1.953529e-03	k: 1181	n:640000
KS ci ratio: 9.328002e-03	ci left: 2.152544e-01	ci right 2.172732e-01	k: 138408	n:640000
FAM198B   640000 perm   304 sec   (2106 perm/sec)   p_kst 2.162625e-01   p_cons 1.845312e-03   p_joint 1.415938e-02

Joint ci ratio: 4.057183e-02	ci left: 1.387112e-02	ci right 1.444706e-02	k: 9202	n:650000
Cons ci ratio: 1.127740e-01	ci left: 1.750728e-03	ci right 1.961443e-03	k: 1205	n:650000
KS ci ratio: 9.256165e-03	ci left: 2.152550e-01	ci right 2.172583e-01	k: 140566	n:650000
FAM198B   650000 perm   311 sec   (2088 perm/sec)   p_kst 2.162554e-01   p_cons 1.853846e-03   p_joint 1.415692e-02

Joint ci ratio: 4.027550e-02	ci left: 1.386493e-02	ci right 1.443631e-02	k: 9338	n:660000
Cons ci ratio: 1.118045e-01	ci left: 1.755127e-03	ci right 1.964436e-03	k: 1226	n:660000
KS ci ratio: 9.188263e-03	ci left: 2.151711e-01	ci right 2.171587e-01	k: 142668	n:660000
FAM198B   660000 perm   319 sec   (2070 perm/sec)   p_kst 2.161636e-01   p_cons 1.857576e-03   p_joint 1.414848e-02

Joint ci ratio: 3.998558e-02	ci left: 1.385894e-02	ci right 1.442587e-02	k: 9474	n:670000
Cons ci ratio: 1.111276e-01	ci left: 1.750695e-03	ci right 1.958128e-03	k: 1241	n:670000
KS ci ratio: 9.121350e-03	ci left: 2.151075e-01	ci right 2.170800e-01	k: 144782	n:670000
FAM198B   670000 perm   326 sec   (2053 perm/sec)   p_kst 2.160925e-01   p_cons 1.852239e-03   p_joint 1.414030e-02

Joint ci ratio: 3.966208e-02	ci left: 1.388081e-02	ci right 1.444393e-02	k: 9629	n:680000
Cons ci ratio: 1.098084e-01	ci left: 1.767849e-03	ci right 1.974667e-03	k: 1271	n:680000
KS ci ratio: 9.055092e-03	ci left: 2.150752e-01	ci right 2.170331e-01	k: 146916	n:680000
FAM198B   680000 perm   334 sec   (2035 perm/sec)   p_kst 2.160529e-01   p_cons 1.869118e-03   p_joint 1.416029e-02

Joint ci ratio: 3.938511e-02	ci left: 1.387479e-02	ci right 1.443365e-02	k: 9765	n:690000
Cons ci ratio: 1.089551e-01	ci left: 1.770420e-03	ci right 1.975827e-03	k: 1291	n:690000
KS ci ratio: 8.988872e-03	ci left: 2.150961e-01	ci right 2.170397e-01	k: 149086	n:690000
FAM198B   690000 perm   342 sec   (2017 perm/sec)   p_kst 2.160667e-01   p_cons 1.871014e-03   p_joint 1.415217e-02

Joint ci ratio: 4.110947e-02	ci left: 1.255918e-02	ci right 1.308772e-02	k: 8975	n:700000
Cons ci ratio: 1.080389e-01	ci left: 1.775705e-03	ci right 1.979882e-03	k: 1313	n:700000
KS ci ratio: 8.710490e-03	ci left: 2.234231e-01	ci right 2.253792e-01	k: 157080	n:700000
FAM198B   700000 perm   350 sec   (2001 perm/sec)   p_kst 2.244000e-01   p_cons 1.875714e-03   p_joint 1.282143e-02

Joint ci ratio: 4.081719e-02	ci left: 1.256212e-02	ci right 1.308694e-02	k: 9104	n:710000
Cons ci ratio: 1.073873e-01	ci left: 1.772623e-03	ci right 1.975138e-03	k: 1329	n:710000
KS ci ratio: 8.649562e-03	ci left: 2.234047e-01	ci right 2.253468e-01	k: 159306	n:710000
FAM198B   710000 perm   358 sec   (1985 perm/sec)   p_kst 2.243746e-01   p_cons 1.871831e-03   p_joint 1.282254e-02

Joint ci ratio: 3.376073e-02	ci left: 1.807016e-02	ci right 1.869206e-02	k: 13233	n:720000
Cons ci ratio: 1.065492e-01	ci left: 1.776389e-03	ci right 1.977652e-03	k: 1350	n:720000
KS ci ratio: 8.588078e-03	ci left: 2.234604e-01	ci right 2.253891e-01	k: 161585	n:720000
FAM198B   720000 perm   366 sec   (1968 perm/sec)   p_kst 2.244236e-01   p_cons 1.875000e-03   p_joint 1.837917e-02

Joint ci ratio: 3.343591e-02	ci left: 1.817173e-02	ci right 1.879100e-02	k: 13490	n:730000
Cons ci ratio: 1.058852e-01	ci left: 1.774724e-03	ci right 1.974467e-03	k: 1367	n:730000
KS ci ratio: 8.529464e-03	ci left: 2.234502e-01	ci right 2.253656e-01	k: 163817	n:730000
FAM198B   730000 perm   374 sec   (1952 perm/sec)   p_kst 2.244068e-01   p_cons 1.872603e-03   p_joint 1.847945e-02

Joint ci ratio: 3.328469e-02	ci left: 1.809233e-02	ci right 1.870605e-02	k: 13614	n:740000
Cons ci ratio: 1.052716e-01	ci left: 1.771792e-03	ci right 1.969978e-03	k: 1383	n:740000
KS ci ratio: 8.470718e-03	ci left: 2.234944e-01	ci right 2.253969e-01	k: 166089	n:740000
FAM198B   740000 perm   382 sec   (1936 perm/sec)   p_kst 2.244446e-01   p_cons 1.868919e-03   p_joint 1.839730e-02

Joint ci ratio: 3.279668e-02	ci left: 1.838536e-02	ci right 1.899970e-02	k: 14018	n:750000
Cons ci ratio: 1.047060e-01	ci left: 1.767643e-03	ci right 1.964237e-03	k: 1398	n:750000
KS ci ratio: 8.411044e-03	ci left: 2.236253e-01	ci right 2.255155e-01	k: 168427	n:750000
FAM198B   750000 perm   390 sec   (1921 perm/sec)   p_kst 2.245693e-01   p_cons 1.864000e-03   p_joint 1.869067e-02

Joint ci ratio: 3.300769e-02	ci left: 1.791892e-02	ci right 1.852160e-02	k: 13846	n:760000
Cons ci ratio: 1.041863e-01	ci left: 1.762324e-03	ci right 1.957294e-03	k: 1412	n:760000
KS ci ratio: 8.355421e-03	ci left: 2.236359e-01	ci right 2.255136e-01	k: 170676	n:760000
FAM198B   760000 perm   399 sec   (1906 perm/sec)   p_kst 2.245737e-01   p_cons 1.857895e-03   p_joint 1.821842e-02

Joint ci ratio: 3.281076e-02	ci left: 1.790130e-02	ci right 1.849973e-02	k: 14013	n:770000
Cons ci ratio: 1.034566e-01	ci left: 1.764736e-03	ci right 1.958523e-03	k: 1432	n:770000
KS ci ratio: 8.300980e-03	ci left: 2.236423e-01	ci right 2.255078e-01	k: 172922	n:770000
FAM198B   770000 perm   407 sec   (1891 perm/sec)   p_kst 2.245740e-01   p_cons 1.859740e-03   p_joint 1.819870e-02

Joint ci ratio: 3.265368e-02	ci left: 1.784472e-02	ci right 1.843835e-02	k: 14149	n:780000
Cons ci ratio: 1.028840e-01	ci left: 1.762095e-03	ci right 1.954455e-03	k: 1448	n:780000
KS ci ratio: 8.246345e-03	ci left: 2.237011e-01	ci right 2.255547e-01	k: 175209	n:780000
FAM198B   780000 perm   416 sec   (1876 perm/sec)   p_kst 2.246269e-01   p_cons 1.856410e-03   p_joint 1.813974e-02

Joint ci ratio: 3.285786e-02	ci left: 1.740660e-02	ci right 1.798935e-02	k: 13980	n:790000
Cons ci ratio: 1.022160e-01	ci left: 1.763224e-03	ci right 1.954383e-03	k: 1467	n:790000
KS ci ratio: 8.196944e-03	ci left: 2.235815e-01	ci right 2.254230e-01	k: 177356	n:790000
FAM198B   790000 perm   424 sec   (1862 perm/sec)   p_kst 2.245013e-01   p_cons 1.856962e-03   p_joint 1.769620e-02

Joint ci ratio: 3.249563e-02	ci left: 1.757462e-02	ci right 1.815638e-02	k: 14291	n:800000
Cons ci ratio: 1.013902e-01	ci left: 1.770420e-03	ci right 1.960716e-03	k: 1491	n:800000
KS ci ratio: 8.146284e-03	ci left: 2.235561e-01	ci right 2.253859e-01	k: 179576	n:800000
FAM198B   800000 perm   433 sec   (1847 perm/sec)   p_kst 2.244700e-01   p_cons 1.863750e-03   p_joint 1.786375e-02

Joint ci ratio: 3.227245e-02	ci left: 1.760012e-02	ci right 1.817865e-02	k: 14489	n:810000
Cons ci ratio: 1.005509e-01	ci left: 1.778648e-03	ci right 1.968153e-03	k: 1516	n:810000
KS ci ratio: 8.097069e-03	ci left: 2.235091e-01	ci right 2.253274e-01	k: 181778	n:810000
FAM198B   810000 perm   442 sec   (1833 perm/sec)   p_kst 2.244173e-01   p_cons 1.871605e-03   p_joint 1.788765e-02

Joint ci ratio: 3.212515e-02	ci left: 1.754757e-02	ci right 1.812169e-02	k: 14623	n:820000
Cons ci ratio: 1.000577e-01	ci left: 1.774791e-03	ci right 1.962902e-03	k: 1531	n:820000
KS ci ratio: 8.048114e-03	ci left: 2.234901e-01	ci right 2.252972e-01	k: 184002	n:820000
FAM198B   820000 perm   451 sec   (1818 perm/sec)   p_kst 2.243927e-01   p_cons 1.867073e-03   p_joint 1.783293e-02

Joint ci ratio: 3.205178e-02	ci left: 1.741860e-02	ci right 1.798718e-02	k: 14692	n:830000
Cons ci ratio: 9.944289e-02	ci left: 1.775728e-03	ci right 1.962715e-03	k: 1550	n:830000
KS ci ratio: 7.999040e-03	ci left: 2.235149e-01	ci right 2.253111e-01	k: 186262	n:830000
FAM198B   830000 perm   460 sec   (1804 perm/sec)   p_kst 2.244120e-01   p_cons 1.867470e-03   p_joint 1.770120e-02

Outputting figure to mutsig2_images.part000000000061/FAM198B.3_1681_830000_0.22441_0.0018675_0.017701.png
                gene_name: FAM198B
               theta_stop: 0.099 
                    nperm: 830000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.0019 
      ci_cons_bounds_left: 0.0018 
     ci_cons_bounds_right: 0.0020 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 61 percent done.
FAM46B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
Cons ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
KS ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
FAM46B   10000 perm   2 sec   (5873 perm/sec)   p_kst 3.365000e-01   p_cons 1.442000e-01   p_joint 2.727000e-01

Outputting figure to mutsig2_images.part000000000061/FAM46B.3_1286_10000_0.3365_0.1442_0.2727.png
                gene_name: FAM46B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 63 percent done.
FAM167A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
FAM167A   10000 perm   1 sec   (6688 perm/sec)   p_kst 6.037000e-01   p_cons 2.458000e-01   p_joint 2.989000e-01

Outputting figure to mutsig2_images.part000000000061/FAM167A.2_653_10000_0.6037_0.2458_0.2989.png
                gene_name: FAM167A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 65 percent done.
FAM172A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
Cons ci ratio: 1.530263e-02	ci left: 8.610043e-01	ci right 8.743807e-01	k: 8678	n:10000
KS ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
FAM172A   10000 perm   2 sec   (6229 perm/sec)   p_kst 6.117000e-01   p_cons 8.678000e-01   p_joint 9.116000e-01

Outputting figure to mutsig2_images.part000000000061/FAM172A.2_1291_10000_0.6117_0.8678_0.9116.png
                gene_name: FAM172A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 67 percent done.
FAM173B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
FAM173B   10000 perm   2 sec   (6545 perm/sec)   p_kst 6.402000e-01   p_cons 3.400000e-03   p_joint 9.200000e-03

Joint ci ratio: 3.067269e-01	ci left: 6.858491e-03	ci right 9.387653e-03	k: 161	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 2.060118e-02	ci left: 6.374691e-01	ci right 6.507889e-01	k: 12883	n:20000
FAM173B   20000 perm   3 sec   (5876 perm/sec)   p_kst 6.441500e-01   p_cons 2.850000e-03   p_joint 8.050000e-03

Joint ci ratio: 2.574802e-01	ci left: 6.679709e-03	ci right 8.684070e-03	k: 229	n:30000
Cons ci ratio: 4.349599e-01	ci left: 2.115050e-03	ci right 3.317815e-03	k: 80	n:30000
KS ci ratio: 1.666054e-02	ci left: 6.431000e-01	ci right 6.539379e-01	k: 19456	n:30000
FAM173B   30000 perm   5 sec   (5579 perm/sec)   p_kst 6.485333e-01   p_cons 2.666667e-03   p_joint 7.633333e-03

Joint ci ratio: 2.247147e-01	ci left: 6.701508e-03	ci right 8.421143e-03	k: 301	n:40000
Cons ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
KS ci ratio: 1.440272e-02	ci left: 6.446506e-01	ci right 6.540277e-01	k: 25974	n:40000
FAM173B   40000 perm   7 sec   (5351 perm/sec)   p_kst 6.493500e-01   p_cons 2.550000e-03   p_joint 7.525000e-03

Joint ci ratio: 2.005903e-01	ci left: 6.819465e-03	ci right 8.358533e-03	k: 378	n:50000
Cons ci ratio: 3.369208e-01	ci left: 2.245931e-03	ci right 3.173307e-03	k: 134	n:50000
KS ci ratio: 1.286781e-02	ci left: 6.456603e-01	ci right 6.540423e-01	k: 32493	n:50000
FAM173B   50000 perm   10 sec   (5187 perm/sec)   p_kst 6.498600e-01   p_cons 2.680000e-03   p_joint 7.560000e-03

Joint ci ratio: 1.836840e-01	ci left: 6.841129e-03	ci right 8.240472e-03	k: 451	n:60000
Cons ci ratio: 3.114450e-01	ci left: 2.223788e-03	ci right 3.058813e-03	k: 157	n:60000
KS ci ratio: 1.173447e-02	ci left: 6.465022e-01	ci right 6.541500e-01	k: 39020	n:60000
FAM173B   60000 perm   12 sec   (5041 perm/sec)   p_kst 6.503333e-01   p_cons 2.616667e-03   p_joint 7.516667e-03

Joint ci ratio: 1.987118e-01	ci left: 4.979138e-03	ci right 6.091025e-03	k: 386	n:70000
Cons ci ratio: 2.918016e-01	ci left: 2.196625e-03	ci right 2.959826e-03	k: 179	n:70000
KS ci ratio: 1.084572e-02	ci left: 6.475558e-01	ci right 6.546316e-01	k: 45577	n:70000
FAM173B   70000 perm   14 sec   (4930 perm/sec)   p_kst 6.511000e-01   p_cons 2.557143e-03   p_joint 5.514286e-03

Joint ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
Cons ci ratio: 2.721044e-01	ci left: 2.235716e-03	ci right 2.951117e-03	k: 206	n:80000
KS ci ratio: 1.015252e-02	ci left: 6.474599e-01	ci right 6.540792e-01	k: 52062	n:80000
FAM173B   80000 perm   17 sec   (4829 perm/sec)   p_kst 6.507750e-01   p_cons 2.575000e-03   p_joint 5.537500e-03

Joint ci ratio: 1.749952e-01	ci left: 5.059135e-03	ci right 6.039815e-03	k: 498	n:90000
Cons ci ratio: 2.564737e-01	ci left: 2.257071e-03	ci right 2.931183e-03	k: 232	n:90000
KS ci ratio: 9.563183e-03	ci left: 6.480648e-01	ci right 6.543032e-01	k: 58607	n:90000
FAM173B   90000 perm   19 sec   (4732 perm/sec)   p_kst 6.511889e-01   p_cons 2.577778e-03   p_joint 5.533333e-03

Joint ci ratio: 1.645948e-01	ci left: 5.175644e-03	ci right 6.113379e-03	k: 563	n:100000
Cons ci ratio: 2.418597e-01	ci left: 2.303276e-03	ci right 2.946114e-03	k: 261	n:100000
KS ci ratio: 9.066428e-03	ci left: 6.485273e-01	ci right 6.544439e-01	k: 65149	n:100000
FAM173B   100000 perm   22 sec   (4629 perm/sec)   p_kst 6.514900e-01   p_cons 2.610000e-03   p_joint 5.630000e-03

Joint ci ratio: 1.281358e-01	ci left: 7.895515e-03	ci right 8.985186e-03	k: 927	n:110000
Cons ci ratio: 2.275376e-01	ci left: 2.384830e-03	ci right 3.005489e-03	k: 295	n:110000
KS ci ratio: 8.634973e-03	ci left: 6.491675e-01	ci right 6.548063e-01	k: 71719	n:110000
FAM173B   110000 perm   24 sec   (4543 perm/sec)   p_kst 6.519909e-01   p_cons 2.681818e-03   p_joint 8.427273e-03

Joint ci ratio: 1.489101e-01	ci left: 5.313965e-03	ci right 6.176851e-03	k: 688	n:120000
Cons ci ratio: 2.171469e-01	ci left: 2.414312e-03	ci right 3.010125e-03	k: 324	n:120000
KS ci ratio: 8.274637e-03	ci left: 6.488881e-01	ci right 6.542880e-01	k: 78191	n:120000
FAM173B   120000 perm   27 sec   (4456 perm/sec)   p_kst 6.515917e-01   p_cons 2.700000e-03   p_joint 5.733333e-03

Joint ci ratio: 1.432050e-01	ci left: 5.320230e-03	ci right 6.148205e-03	k: 744	n:130000
Cons ci ratio: 2.083563e-01	ci left: 2.432510e-03	ci right 3.005415e-03	k: 352	n:130000
KS ci ratio: 7.946909e-03	ci left: 6.491723e-01	ci right 6.543594e-01	k: 84730	n:130000
FAM173B   130000 perm   30 sec   (4368 perm/sec)   p_kst 6.517692e-01   p_cons 2.707692e-03   p_joint 5.723077e-03

Joint ci ratio: 1.372501e-01	ci left: 5.395121e-03	ci right 6.196984e-03	k: 810	n:140000
Cons ci ratio: 1.989885e-01	ci left: 2.489243e-03	ci right 3.045954e-03	k: 386	n:140000
KS ci ratio: 7.655511e-03	ci left: 6.494051e-01	ci right 6.544029e-01	k: 91267	n:140000
FAM173B   140000 perm   33 sec   (4291 perm/sec)   p_kst 6.519071e-01   p_cons 2.757143e-03   p_joint 5.785714e-03

Joint ci ratio: 1.328215e-01	ci left: 5.389726e-03	ci right 6.162899e-03	k: 865	n:150000
Cons ci ratio: 1.919265e-01	ci left: 2.507170e-03	ci right 3.045668e-03	k: 415	n:150000
KS ci ratio: 7.401478e-03	ci left: 6.491492e-01	ci right 6.539783e-01	k: 97735	n:150000
FAM173B   150000 perm   36 sec   (4218 perm/sec)   p_kst 6.515667e-01   p_cons 2.766667e-03   p_joint 5.766667e-03

Joint ci ratio: 1.293620e-01	ci left: 5.336976e-03	ci right 6.081107e-03	k: 912	n:160000
Cons ci ratio: 1.861971e-01	ci left: 2.505282e-03	ci right 3.025496e-03	k: 441	n:160000
KS ci ratio: 7.169083e-03	ci left: 6.490592e-01	ci right 6.537353e-01	k: 104224	n:160000
FAM173B   160000 perm   39 sec   (4147 perm/sec)   p_kst 6.514000e-01   p_cons 2.756250e-03   p_joint 5.700000e-03

Joint ci ratio: 1.267583e-01	ci left: 5.239387e-03	ci right 5.954103e-03	k: 950	n:170000
Cons ci ratio: 1.831227e-01	ci left: 2.442061e-03	ci right 2.939845e-03	k: 456	n:170000
KS ci ratio: 6.954314e-03	ci left: 6.491764e-01	ci right 6.537126e-01	k: 110746	n:170000
FAM173B   170000 perm   42 sec   (4077 perm/sec)   p_kst 6.514471e-01   p_cons 2.682353e-03   p_joint 5.588235e-03

Joint ci ratio: 1.235540e-01	ci left: 5.217388e-03	ci right 5.909794e-03	k: 1000	n:180000
Cons ci ratio: 1.800043e-01	ci left: 2.391234e-03	ci right 2.869453e-03	k: 472	n:180000
KS ci ratio: 6.754368e-03	ci left: 6.495105e-01	ci right 6.539179e-01	k: 117309	n:180000
FAM173B   180000 perm   45 sec   (4010 perm/sec)   p_kst 6.517167e-01   p_cons 2.622222e-03   p_joint 5.555556e-03

Joint ci ratio: 1.201793e-01	ci left: 5.233646e-03	ci right 5.907890e-03	k: 1057	n:190000
Cons ci ratio: 1.752523e-01	ci left: 2.396139e-03	ci right 2.861348e-03	k: 498	n:190000
KS ci ratio: 6.566233e-03	ci left: 6.501220e-01	ci right 6.544102e-01	k: 123931	n:190000
FAM173B   190000 perm   48 sec   (3942 perm/sec)   p_kst 6.522684e-01   p_cons 2.621053e-03   p_joint 5.563158e-03

Joint ci ratio: 1.175982e-01	ci left: 5.199970e-03	ci right 5.854487e-03	k: 1104	n:200000
Cons ci ratio: 1.706948e-01	ci left: 2.405489e-03	ci right 2.859118e-03	k: 525	n:200000
KS ci ratio: 6.401291e-03	ci left: 6.500830e-01	ci right 6.542626e-01	k: 130435	n:200000
FAM173B   200000 perm   52 sec   (3877 perm/sec)   p_kst 6.521750e-01   p_cons 2.625000e-03   p_joint 5.520000e-03

Joint ci ratio: 1.146772e-01	ci left: 5.215899e-03	ci right 5.855009e-03	k: 1161	n:210000
Cons ci ratio: 1.669299e-01	ci left: 2.400399e-03	ci right 2.842080e-03	k: 549	n:210000
KS ci ratio: 6.251071e-03	ci left: 6.498390e-01	ci right 6.539187e-01	k: 136895	n:210000
FAM173B   210000 perm   55 sec   (3815 perm/sec)   p_kst 6.518810e-01   p_cons 2.614286e-03   p_joint 5.528571e-03

Joint ci ratio: 1.118253e-01	ci left: 5.243818e-03	ci right 5.869317e-03	k: 1221	n:220000
Cons ci ratio: 1.625541e-01	ci left: 2.422034e-03	ci right 2.854872e-03	k: 579	n:220000
KS ci ratio: 6.108195e-03	ci left: 6.498232e-01	ci right 6.538091e-01	k: 143400	n:220000
FAM173B   220000 perm   59 sec   (3754 perm/sec)   p_kst 6.518182e-01   p_cons 2.631818e-03   p_joint 5.550000e-03

Joint ci ratio: 1.098676e-01	ci left: 5.201820e-03	ci right 5.810743e-03	k: 1265	n:230000
Cons ci ratio: 1.600918e-01	ci left: 2.391827e-03	ci right 2.812169e-03	k: 597	n:230000
KS ci ratio: 5.972456e-03	ci left: 6.499796e-01	ci right 6.538775e-01	k: 149944	n:230000
FAM173B   230000 perm   63 sec   (3673 perm/sec)   p_kst 6.519304e-01   p_cons 2.595652e-03   p_joint 5.500000e-03

Joint ci ratio: 1.070682e-01	ci left: 5.256679e-03	ci right 5.855357e-03	k: 1332	n:240000
Cons ci ratio: 1.556001e-01	ci left: 2.432245e-03	ci right 2.846579e-03	k: 632	n:240000
KS ci ratio: 5.847529e-03	ci left: 6.499569e-01	ci right 6.537728e-01	k: 156448	n:240000
FAM173B   240000 perm   66 sec   (3618 perm/sec)   p_kst 6.518667e-01   p_cons 2.633333e-03   p_joint 5.550000e-03

Joint ci ratio: 1.052310e-01	ci left: 5.229417e-03	ci right 5.814137e-03	k: 1379	n:250000
Cons ci ratio: 1.529660e-01	ci left: 2.419556e-03	ci right 2.824112e-03	k: 654	n:250000
KS ci ratio: 5.730934e-03	ci left: 6.498727e-01	ci right 6.536118e-01	k: 162936	n:250000
FAM173B   250000 perm   70 sec   (3559 perm/sec)   p_kst 6.517440e-01   p_cons 2.616000e-03   p_joint 5.516000e-03

Joint ci ratio: 1.032671e-01	ci left: 5.226816e-03	ci right 5.799676e-03	k: 1432	n:260000
Cons ci ratio: 1.505728e-01	ci left: 2.404197e-03	ci right 2.799329e-03	k: 675	n:260000
KS ci ratio: 5.618570e-03	ci left: 6.499960e-01	ci right 6.536621e-01	k: 169476	n:260000
FAM173B   260000 perm   74 sec   (3506 perm/sec)   p_kst 6.518308e-01   p_cons 2.596154e-03   p_joint 5.507692e-03

Joint ci ratio: 1.013064e-01	ci left: 5.235333e-03	ci right 5.797584e-03	k: 1488	n:270000
Cons ci ratio: 1.475476e-01	ci left: 2.414990e-03	ci right 2.803217e-03	k: 703	n:270000
KS ci ratio: 5.514140e-03	ci left: 6.499810e-01	ci right 6.535787e-01	k: 175981	n:270000
FAM173B   270000 perm   78 sec   (3451 perm/sec)   p_kst 6.517815e-01   p_cons 2.603704e-03   p_joint 5.511111e-03

Joint ci ratio: 9.938872e-02	ci left: 5.250303e-03	ci right 5.802865e-03	k: 1546	n:280000
Cons ci ratio: 1.448962e-01	ci left: 2.418200e-03	ci right 2.799354e-03	k: 729	n:280000
KS ci ratio: 5.415537e-03	ci left: 6.499498e-01	ci right 6.534827e-01	k: 182481	n:280000
FAM173B   280000 perm   82 sec   (3403 perm/sec)   p_kst 6.517179e-01   p_cons 2.603571e-03   p_joint 5.521429e-03

Joint ci ratio: 9.782137e-02	ci left: 5.237418e-03	ci right 5.779433e-03	k: 1596	n:290000
Cons ci ratio: 1.423828e-01	ci left: 2.421247e-03	ci right 2.795699e-03	k: 755	n:290000
KS ci ratio: 5.320748e-03	ci left: 6.500318e-01	ci right 6.535031e-01	k: 189013	n:290000
FAM173B   290000 perm   86 sec   (3353 perm/sec)   p_kst 6.517690e-01   p_cons 2.603448e-03   p_joint 5.503448e-03

Joint ci ratio: 9.623782e-02	ci left: 5.235216e-03	ci right 5.767738e-03	k: 1649	n:300000
Cons ci ratio: 1.399959e-01	ci left: 2.424145e-03	ci right 2.792235e-03	k: 781	n:300000
KS ci ratio: 5.232766e-03	ci left: 6.499353e-01	ci right 6.533485e-01	k: 195493	n:300000
FAM173B   300000 perm   91 sec   (3307 perm/sec)   p_kst 6.516433e-01   p_cons 2.603333e-03   p_joint 5.496667e-03

Joint ci ratio: 9.467288e-02	ci left: 5.239523e-03	ci right 5.763335e-03	k: 1704	n:310000
Cons ci ratio: 1.382406e-01	ci left: 2.408216e-03	ci right 2.768925e-03	k: 801	n:310000
KS ci ratio: 5.148679e-03	ci left: 6.498745e-01	ci right 6.532323e-01	k: 201982	n:310000
FAM173B   310000 perm   95 sec   (3256 perm/sec)   p_kst 6.515548e-01   p_cons 2.583871e-03   p_joint 5.496774e-03

Joint ci ratio: 9.326183e-02	ci left: 5.234468e-03	ci right 5.749550e-03	k: 1756	n:320000
Cons ci ratio: 1.358064e-01	ci left: 2.420478e-03	ci right 2.776125e-03	k: 830	n:320000
KS ci ratio: 5.067193e-03	ci left: 6.499369e-01	ci right 6.532417e-01	k: 208509	n:320000
FAM173B   320000 perm   100 sec   (3214 perm/sec)   p_kst 6.515906e-01   p_cons 2.593750e-03   p_joint 5.487500e-03

Joint ci ratio: 9.214282e-02	ci left: 5.203126e-03	ci right 5.708649e-03	k: 1799	n:330000
Cons ci ratio: 1.344401e-01	ci left: 2.396902e-03	ci right 2.745258e-03	k: 847	n:330000
KS ci ratio: 4.989824e-03	ci left: 6.499624e-01	ci right 6.532167e-01	k: 215025	n:330000
FAM173B   330000 perm   104 sec   (3170 perm/sec)   p_kst 6.515909e-01   p_cons 2.566667e-03   p_joint 5.451515e-03

Joint ci ratio: 9.057032e-02	ci left: 5.231157e-03	ci right 5.730270e-03	k: 1862	n:340000
Cons ci ratio: 1.325013e-01	ci left: 2.397479e-03	ci right 2.740498e-03	k: 872	n:340000
KS ci ratio: 4.915703e-03	ci left: 6.500045e-01	ci right 6.532105e-01	k: 221547	n:340000
FAM173B   340000 perm   109 sec   (3129 perm/sec)   p_kst 6.516088e-01   p_cons 2.564706e-03   p_joint 5.476471e-03

Joint ci ratio: 8.926227e-02	ci left: 5.235305e-03	ci right 5.727223e-03	k: 1917	n:350000
Cons ci ratio: 1.307901e-01	ci left: 2.392529e-03	ci right 2.730076e-03	k: 895	n:350000
KS ci ratio: 4.844211e-03	ci left: 6.500989e-01	ci right 6.532586e-01	k: 228088	n:350000
FAM173B   350000 perm   113 sec   (3090 perm/sec)   p_kst 6.516800e-01   p_cons 2.557143e-03   p_joint 5.477143e-03

Joint ci ratio: 8.800930e-02	ci left: 5.239271e-03	ci right 5.724297e-03	k: 1972	n:360000
Cons ci ratio: 1.288627e-01	ci left: 2.398635e-03	ci right 2.731675e-03	k: 922	n:360000
KS ci ratio: 4.778789e-03	ci left: 6.498992e-01	ci right 6.530151e-01	k: 234525	n:360000
FAM173B   360000 perm   118 sec   (3052 perm/sec)   p_kst 6.514583e-01   p_cons 2.561111e-03   p_joint 5.477778e-03

Joint ci ratio: 8.680766e-02	ci left: 5.243069e-03	ci right 5.721483e-03	k: 2027	n:370000
Cons ci ratio: 1.270180e-01	ci left: 2.404445e-03	ci right 2.733152e-03	k: 949	n:370000
KS ci ratio: 4.711681e-03	ci left: 6.501217e-01	ci right 6.531948e-01	k: 241114	n:370000
FAM173B   370000 perm   123 sec   (3014 perm/sec)   p_kst 6.516595e-01   p_cons 2.564865e-03   p_joint 5.478378e-03

Joint ci ratio: 8.600754e-02	ci left: 5.202928e-03	ci right 5.673083e-03	k: 2065	n:380000
Cons ci ratio: 1.257027e-01	ci left: 2.392137e-03	ci right 2.715523e-03	k: 969	n:380000
KS ci ratio: 4.649935e-03	ci left: 6.500774e-01	ci right 6.531098e-01	k: 247606	n:380000
FAM173B   380000 perm   128 sec   (2978 perm/sec)   p_kst 6.515947e-01   p_cons 2.550000e-03   p_joint 5.434211e-03

Joint ci ratio: 8.500599e-02	ci left: 5.192473e-03	ci right 5.655948e-03	k: 2114	n:390000
Cons ci ratio: 1.241761e-01	ci left: 2.390415e-03	ci right 2.709355e-03	k: 993	n:390000
KS ci ratio: 4.589414e-03	ci left: 6.501484e-01	ci right 6.531416e-01	k: 254142	n:390000
FAM173B   390000 perm   133 sec   (2940 perm/sec)   p_kst 6.516462e-01   p_cons 2.546154e-03   p_joint 5.420513e-03

Joint ci ratio: 8.384407e-02	ci left: 5.207048e-03	ci right 5.665161e-03	k: 2173	n:400000
Cons ci ratio: 1.221041e-01	ci left: 2.413038e-03	ci right 2.729236e-03	k: 1027	n:400000
KS ci ratio: 4.531420e-03	ci left: 6.501937e-01	ci right 6.531491e-01	k: 260669	n:400000
FAM173B   400000 perm   138 sec   (2906 perm/sec)   p_kst 6.516725e-01   p_cons 2.567500e-03   p_joint 5.432500e-03

Joint ci ratio: 8.257992e-02	ci left: 5.240065e-03	ci right 5.693797e-03	k: 2240	n:410000
Cons ci ratio: 1.205313e-01	ci left: 2.418039e-03	ci right 2.730520e-03	k: 1054	n:410000
KS ci ratio: 4.475018e-03	ci left: 6.502931e-01	ci right 6.532121e-01	k: 267219	n:410000
FAM173B   410000 perm   143 sec   (2873 perm/sec)   p_kst 6.517537e-01   p_cons 2.570732e-03   p_joint 5.463415e-03

Joint ci ratio: 8.144226e-02	ci left: 5.262227e-03	ci right 5.711303e-03	k: 2303	n:420000
Cons ci ratio: 1.185791e-01	ci left: 2.441310e-03	ci right 2.751330e-03	k: 1089	n:420000
KS ci ratio: 4.422735e-03	ci left: 6.501759e-01	ci right 6.530601e-01	k: 273680	n:420000
FAM173B   420000 perm   148 sec   (2840 perm/sec)   p_kst 6.516190e-01   p_cons 2.592857e-03   p_joint 5.483333e-03

Joint ci ratio: 8.059036e-02	ci left: 5.251494e-03	ci right 5.694745e-03	k: 2352	n:430000
Cons ci ratio: 1.172423e-01	ci left: 2.440960e-03	ci right 2.747199e-03	k: 1114	n:430000
KS ci ratio: 4.371345e-03	ci left: 6.501574e-01	ci right 6.530080e-01	k: 280181	n:430000
FAM173B   430000 perm   153 sec   (2807 perm/sec)   p_kst 6.515837e-01   p_cons 2.590698e-03   p_joint 5.469767e-03

Joint ci ratio: 7.984824e-02	ci left: 5.230133e-03	ci right 5.667327e-03	k: 2396	n:440000
Cons ci ratio: 1.160519e-01	ci left: 2.436231e-03	ci right 2.738561e-03	k: 1137	n:440000
KS ci ratio: 4.320841e-03	ci left: 6.502310e-01	ci right 6.530488e-01	k: 286722	n:440000
FAM173B   440000 perm   159 sec   (2776 perm/sec)   p_kst 6.516409e-01   p_cons 2.584091e-03   p_joint 5.445455e-03

Joint ci ratio: 7.875406e-02	ci left: 5.259847e-03	ci right 5.693224e-03	k: 2463	n:450000
Cons ci ratio: 1.143062e-01	ci left: 2.457631e-03	ci right 2.757719e-03	k: 1172	n:450000
KS ci ratio: 4.273324e-03	ci left: 6.501658e-01	ci right 6.529523e-01	k: 293202	n:450000
FAM173B   450000 perm   164 sec   (2745 perm/sec)   p_kst 6.515600e-01   p_cons 2.604444e-03   p_joint 5.473333e-03

Joint ci ratio: 7.796738e-02	ci left: 5.252068e-03	ci right 5.680285e-03	k: 2513	n:460000
Cons ci ratio: 1.132972e-01	ci left: 2.448556e-03	ci right 2.744721e-03	k: 1193	n:460000
KS ci ratio: 4.228534e-03	ci left: 6.499752e-01	ci right 6.527316e-01	k: 299623	n:460000
FAM173B   460000 perm   169 sec   (2716 perm/sec)   p_kst 6.513543e-01   p_cons 2.593478e-03   p_joint 5.463043e-03

Joint ci ratio: 7.693275e-02	ci left: 5.282203e-03	ci right 5.706906e-03	k: 2581	n:470000
Cons ci ratio: 1.121756e-01	ci left: 2.446083e-03	ci right 2.738826e-03	k: 1217	n:470000
KS ci ratio: 4.183926e-03	ci left: 6.499228e-01	ci right 6.526498e-01	k: 306105	n:470000
FAM173B   470000 perm   175 sec   (2686 perm/sec)   p_kst 6.512872e-01   p_cons 2.589362e-03   p_joint 5.491489e-03

Joint ci ratio: 7.590944e-02	ci left: 5.315207e-03	ci right 5.736628e-03	k: 2651	n:480000
Cons ci ratio: 1.108187e-01	ci left: 2.455880e-03	ci right 2.746009e-03	k: 1247	n:480000
KS ci ratio: 4.140055e-03	ci left: 6.499436e-01	ci right 6.526420e-01	k: 312621	n:480000
FAM173B   480000 perm   181 sec   (2656 perm/sec)   p_kst 6.512938e-01   p_cons 2.597917e-03   p_joint 5.522917e-03

Joint ci ratio: 7.514831e-02	ci left: 5.314856e-03	ci right 5.731840e-03	k: 2705	n:490000
Cons ci ratio: 1.096389e-01	ci left: 2.459344e-03	ci right 2.746588e-03	k: 1274	n:490000
KS ci ratio: 4.097259e-03	ci left: 6.499944e-01	ci right 6.526650e-01	k: 319152	n:490000
FAM173B   490000 perm   186 sec   (2628 perm/sec)   p_kst 6.513306e-01   p_cons 2.600000e-03   p_joint 5.520408e-03

Joint ci ratio: 7.460012e-02	ci left: 5.287058e-03	ci right 5.698704e-03	k: 2745	n:500000
Cons ci ratio: 1.090856e-01	ci left: 2.435444e-03	ci right 2.718369e-03	k: 1287	n:500000
KS ci ratio: 4.054782e-03	ci left: 6.501534e-01	ci right 6.527969e-01	k: 325738	n:500000
FAM173B   500000 perm   192 sec   (2601 perm/sec)   p_kst 6.514760e-01   p_cons 2.574000e-03   p_joint 5.490000e-03

Joint ci ratio: 7.389059e-02	ci left: 5.285382e-03	ci right 5.692815e-03	k: 2798	n:510000
Cons ci ratio: 1.077956e-01	ci left: 2.446826e-03	ci right 2.727499e-03	k: 1318	n:510000
KS ci ratio: 4.014169e-03	ci left: 6.502414e-01	ci right 6.528588e-01	k: 332291	n:510000
FAM173B   510000 perm   198 sec   (2574 perm/sec)   p_kst 6.515510e-01   p_cons 2.584314e-03   p_joint 5.486275e-03

Joint ci ratio: 7.313650e-02	ci left: 5.293229e-03	ci right 5.696926e-03	k: 2856	n:520000
Cons ci ratio: 1.063923e-01	ci left: 2.465278e-03	ci right 2.744156e-03	k: 1353	n:520000
KS ci ratio: 3.974703e-03	ci left: 6.503320e-01	ci right 6.529240e-01	k: 338847	n:520000
FAM173B   520000 perm   204 sec   (2548 perm/sec)   p_kst 6.516288e-01   p_cons 2.601923e-03   p_joint 5.492308e-03

Joint ci ratio: 7.248008e-02	ci left: 5.289684e-03	ci right 5.689336e-03	k: 2908	n:530000
Cons ci ratio: 1.054236e-01	ci left: 2.464684e-03	ci right 2.740798e-03	k: 1378	n:530000
KS ci ratio: 3.935936e-03	ci left: 6.504703e-01	ci right 6.530374e-01	k: 345430	n:530000
FAM173B   530000 perm   210 sec   (2522 perm/sec)   p_kst 6.517547e-01   p_cons 2.600000e-03   p_joint 5.486792e-03

Joint ci ratio: 7.180445e-02	ci left: 5.291741e-03	ci right 5.687667e-03	k: 2963	n:540000
Cons ci ratio: 1.044436e-01	ci left: 2.465926e-03	ci right 2.739454e-03	k: 1404	n:540000
KS ci ratio: 3.898280e-03	ci left: 6.506036e-01	ci right 6.531466e-01	k: 352013	n:540000
FAM173B   540000 perm   216 sec   (2495 perm/sec)   p_kst 6.518759e-01   p_cons 2.600000e-03   p_joint 5.487037e-03

Joint ci ratio: 7.123046e-02	ci left: 5.281239e-03	ci right 5.673089e-03	k: 3011	n:550000
Cons ci ratio: 1.037086e-01	ci left: 2.456507e-03	ci right 2.726956e-03	k: 1424	n:550000
KS ci ratio: 3.863774e-03	ci left: 6.504865e-01	ci right 6.530065e-01	k: 358461	n:550000
FAM173B   550000 perm   223 sec   (2470 perm/sec)   p_kst 6.517473e-01   p_cons 2.589091e-03   p_joint 5.474545e-03

Joint ci ratio: 7.058887e-02	ci left: 5.283404e-03	ci right 5.671739e-03	k: 3066	n:560000
Cons ci ratio: 1.026689e-01	ci left: 2.463091e-03	ci right 2.731382e-03	k: 1453	n:560000
KS ci ratio: 3.830288e-03	ci left: 6.503594e-01	ci right 6.528569e-01	k: 364901	n:560000
FAM173B   560000 perm   229 sec   (2445 perm/sec)   p_kst 6.516089e-01   p_cons 2.594643e-03   p_joint 5.475000e-03

Joint ci ratio: 7.005463e-02	ci left: 5.271717e-03	ci right 5.656142e-03	k: 3113	n:570000
Cons ci ratio: 1.021095e-01	ci left: 2.447229e-03	ci right 2.712253e-03	k: 1469	n:570000
KS ci ratio: 3.796057e-03	ci left: 6.504282e-01	ci right 6.529036e-01	k: 371450	n:570000
FAM173B   570000 perm   235 sec   (2421 perm/sec)   p_kst 6.516667e-01   p_cons 2.577193e-03   p_joint 5.461404e-03

Joint ci ratio: 6.953233e-02	ci left: 5.260445e-03	ci right 5.641072e-03	k: 3160	n:580000
Cons ci ratio: 1.013883e-01	ci left: 2.440321e-03	ci right 2.702618e-03	k: 1490	n:580000
KS ci ratio: 3.763429e-03	ci left: 6.504101e-01	ci right 6.528642e-01	k: 377950	n:580000
FAM173B   580000 perm   242 sec   (2396 perm/sec)   p_kst 6.516379e-01   p_cons 2.568966e-03   p_joint 5.448276e-03

Joint ci ratio: 6.901072e-02	ci left: 5.251231e-03	ci right 5.628227e-03	k: 3208	n:590000
Cons ci ratio: 1.006488e-01	ci left: 2.435305e-03	ci right 2.695042e-03	k: 1512	n:590000
KS ci ratio: 3.731627e-03	ci left: 6.503928e-01	ci right 6.528260e-01	k: 384450	n:590000
FAM173B   590000 perm   249 sec   (2372 perm/sec)   p_kst 6.516102e-01   p_cons 2.562712e-03   p_joint 5.437288e-03

Joint ci ratio: 6.851125e-02	ci left: 5.240696e-03	ci right 5.614104e-03	k: 3255	n:600000
Cons ci ratio: 9.986005e-02	ci left: 2.433713e-03	ci right 2.691127e-03	k: 1536	n:600000
KS ci ratio: 3.699695e-03	ci left: 6.504896e-01	ci right 6.529023e-01	k: 391018	n:600000
FAM173B   600000 perm   256 sec   (2348 perm/sec)   p_kst 6.516967e-01   p_cons 2.560000e-03   p_joint 5.425000e-03

Outputting figure to mutsig2_images.part000000000061/FAM173B.2_722_600000_0.6517_0.00256_0.005425.png
                gene_name: FAM173B
               theta_stop: 0.100 
                    nperm: 600000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0024 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0056 

Current progress: 69 percent done.
FAM175A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
KS ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
FAM175A   10000 perm   2 sec   (6349 perm/sec)   p_kst 7.878000e-01   p_cons 5.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM175A.2_1266_10000_0.7878_0.5591_1.png
                gene_name: FAM175A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FAM175B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
Cons ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
KS ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
FAM175B   10000 perm   2 sec   (6294 perm/sec)   p_kst 3.713000e-01   p_cons 3.620000e-01   p_joint 5.838000e-01

Outputting figure to mutsig2_images.part000000000061/FAM175B.2_1284_10000_0.3713_0.362_0.5838.png
                gene_name: FAM175B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 73 percent done.
FAM177A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
Cons ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
KS ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
FAM177A1   10000 perm   2 sec   (6658 perm/sec)   p_kst 3.778000e-01   p_cons 2.300000e-02   p_joint 1.320000e-01

Joint ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
Cons ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
KS ci ratio: 3.509997e-02	ci left: 3.773016e-01	ci right 3.908321e-01	k: 7681	n:20000
FAM177A1   20000 perm   4 sec   (5662 perm/sec)   p_kst 3.840500e-01   p_cons 2.370000e-02   p_joint 5.775000e-02

Joint ci ratio: 8.693766e-02	ci left: 6.070091e-02	ci right 6.625067e-02	k: 1903	n:30000
Cons ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
KS ci ratio: 2.862667e-02	ci left: 3.790896e-01	ci right 3.901328e-01	k: 11538	n:30000
FAM177A1   30000 perm   6 sec   (5264 perm/sec)   p_kst 3.846000e-01   p_cons 2.306667e-02   p_joint 6.343333e-02

Joint ci ratio: 7.212129e-02	ci left: 6.628924e-02	ci right 7.127359e-02	k: 2750	n:40000
Cons ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
KS ci ratio: 2.495761e-02	ci left: 3.766861e-01	ci right 3.862312e-01	k: 15258	n:40000
FAM177A1   40000 perm   8 sec   (5009 perm/sec)   p_kst 3.814500e-01   p_cons 2.250000e-02   p_joint 6.875000e-02

Joint ci ratio: 7.200350e-02	ci left: 5.394152e-02	ci right 5.799022e-02	k: 2797	n:50000
Cons ci ratio: 1.160241e-01	ci left: 2.102354e-02	ci right 2.363233e-02	k: 1115	n:50000
KS ci ratio: 2.232440e-02	ci left: 3.771594e-01	ci right 3.856944e-01	k: 19071	n:50000
FAM177A1   50000 perm   10 sec   (4810 perm/sec)   p_kst 3.814200e-01   p_cons 2.230000e-02   p_joint 5.594000e-02

Joint ci ratio: 6.837598e-02	ci left: 5.015483e-02	ci right 5.372200e-02	k: 3115	n:60000
Cons ci ratio: 1.058425e-01	ci left: 2.116580e-02	ci right 2.354738e-02	k: 1340	n:60000
KS ci ratio: 2.033144e-02	ci left: 3.786420e-01	ci right 3.864361e-01	k: 22952	n:60000
FAM177A1   60000 perm   13 sec   (4676 perm/sec)   p_kst 3.825333e-01   p_cons 2.233333e-02   p_joint 5.191667e-02

Joint ci ratio: 5.465456e-02	ci left: 6.658309e-02	ci right 7.033850e-02	k: 4791	n:70000
Cons ci ratio: 9.712164e-02	ci left: 2.163719e-02	ci right 2.385976e-02	k: 1591	n:70000
KS ci ratio: 1.881841e-02	ci left: 3.790544e-01	ci right 3.862696e-01	k: 26786	n:70000
FAM177A1   70000 perm   15 sec   (4625 perm/sec)   p_kst 3.826571e-01   p_cons 2.272857e-02   p_joint 6.844286e-02

Outputting figure to mutsig2_images.part000000000061/FAM177A1.2_731_70000_0.38266_0.022729_0.068443.png
                gene_name: FAM177A1
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.070 

Current progress: 76 percent done.
FAM177B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
Cons ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
KS ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
FAM177B   10000 perm   2 sec   (6363 perm/sec)   p_kst 3.290000e-02   p_cons 3.635000e-01   p_joint 3.969000e-01

Joint ci ratio: 6.845731e-02	ci left: 1.360071e-01	ci right 1.456976e-01	k: 2816	n:20000
Cons ci ratio: 3.657636e-02	ci left: 3.580739e-01	ci right 3.714655e-01	k: 7295	n:20000
KS ci ratio: 1.557474e-01	ci left: 2.830458e-02	ci right 3.313313e-02	k: 613	n:20000
FAM177B   20000 perm   4 sec   (5640 perm/sec)   p_kst 3.065000e-02   p_cons 3.647500e-01   p_joint 1.408000e-01

Joint ci ratio: 3.662795e-02	ci left: 2.712120e-01	ci right 2.813647e-01	k: 8288	n:30000
Cons ci ratio: 2.872974e-02	ci left: 3.773943e-01	ci right 3.884284e-01	k: 11487	n:30000
KS ci ratio: 1.289114e-01	ci left: 2.796946e-02	ci right 3.185562e-02	k: 896	n:30000
FAM177B   30000 perm   6 sec   (5392 perm/sec)   p_kst 2.986667e-02   p_cons 3.829000e-01   p_joint 2.762667e-01

Joint ci ratio: 3.713812e-02	ci left: 2.137880e-01	ci right 2.219030e-01	k: 8713	n:40000
Cons ci ratio: 2.502252e-02	ci left: 3.754641e-01	ci right 3.850033e-01	k: 15209	n:40000
KS ci ratio: 1.105500e-01	ci left: 2.878783e-02	ci right 3.218078e-02	k: 1218	n:40000
FAM177B   40000 perm   8 sec   (5170 perm/sec)   p_kst 3.045000e-02   p_cons 3.802250e-01   p_joint 2.178250e-01

Joint ci ratio: 3.303809e-02	ci left: 2.160573e-01	ci right 2.233353e-01	k: 10984	n:50000
Cons ci ratio: 2.243360e-02	ci left: 3.748645e-01	ci right 3.833895e-01	k: 18956	n:50000
KS ci ratio: 9.880392e-02	ci left: 2.901005e-02	ci right 3.204478e-02	k: 1525	n:50000
FAM177B   50000 perm   10 sec   (5062 perm/sec)   p_kst 3.050000e-02   p_cons 3.791200e-01   p_joint 2.196800e-01

Outputting figure to mutsig2_images.part000000000061/FAM177B.2_493_50000_0.0305_0.37912_0.21968.png
                gene_name: FAM177B
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 78 percent done.
FAM180A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
Cons ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
KS ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
FAM180A   10000 perm   1 sec   (7127 perm/sec)   p_kst 7.756000e-01   p_cons 7.920000e-02   p_joint 4.822000e-01

Joint ci ratio: 3.722438e-02	ci left: 3.500076e-01	ci right 3.633341e-01	k: 7133	n:20000
Cons ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
KS ci ratio: 1.490958e-02	ci left: 7.697534e-01	ci right 7.813664e-01	k: 15512	n:20000
FAM180A   20000 perm   3 sec   (6249 perm/sec)   p_kst 7.756000e-01   p_cons 7.970000e-02   p_joint 3.566500e-01

Outputting figure to mutsig2_images.part000000000061/FAM180A.2_534_20000_0.7756_0.0797_0.35665.png
                gene_name: FAM180A
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 80 percent done.
FAM181B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
Cons ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
KS ci ratio: 7.616898e-03	ci left: 9.598466e-01	ci right 9.672802e-01	k: 9637	n:10000
FAM181B   10000 perm   2 sec   (6504 perm/sec)   p_kst 9.637000e-01   p_cons 3.237000e-01   p_joint 4.925000e-01

Outputting figure to mutsig2_images.part000000000061/FAM181B.2_1285_10000_0.9637_0.3237_0.4925.png
                gene_name: FAM181B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 82 percent done.
FAM189B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
Cons ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
KS ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
FAM189B   10000 perm   2 sec   (5829 perm/sec)   p_kst 3.605000e-01   p_cons 7.389000e-01   p_joint 8.088000e-01

Outputting figure to mutsig2_images.part000000000061/FAM189B.2_2055_10000_0.3605_0.7389_0.8088.png
                gene_name: FAM189B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 84 percent done.
FAM199X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
FAM199X   10000 perm   2 sec   (6332 perm/sec)   p_kst 9.419000e-01   p_cons 5.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM199X.2_1191_10000_0.9419_0.5594_1.png
                gene_name: FAM199X
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FAM19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
KS ci ratio: 1.534925e-02	ci left: 8.602896e-01	ci right 8.736958e-01	k: 8671	n:10000
FAM19A1   10000 perm   1 sec   (6820 perm/sec)   p_kst 8.671000e-01   p_cons 7.551000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM19A1.2_418_10000_0.8671_0.7551_1.png
                gene_name: FAM19A1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
FAM19A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
FAM19A2   10000 perm   1 sec   (6876 perm/sec)   p_kst 1.133000e-01   p_cons 7.950000e-02   p_joint 4.199000e-01

Joint ci ratio: 6.403515e-02	ci left: 1.527233e-01	ci right 1.628764e-01	k: 3155	n:20000
Cons ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
KS ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
FAM19A2   20000 perm   3 sec   (6096 perm/sec)   p_kst 1.126000e-01   p_cons 7.860000e-02   p_joint 1.577500e-01

Outputting figure to mutsig2_images.part000000000061/FAM19A2.2_412_20000_0.1126_0.0786_0.15775.png
                gene_name: FAM19A2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 90 percent done.
FAM21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
FAM21A   10000 perm   2 sec   (4809 perm/sec)   p_kst 5.100000e-03   p_cons 4.090000e-01   p_joint 2.300000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 3.338228e-02	ci left: 4.012274e-01	ci right 4.148993e-01	k: 8161	n:20000
KS ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
FAM21A   20000 perm   5 sec   (4391 perm/sec)   p_kst 4.950000e-03   p_cons 4.080500e-01   p_joint 3.500000e-04

Joint ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
Cons ci ratio: 2.734880e-02	ci left: 4.008680e-01	ci right 4.120168e-01	k: 12193	n:30000
KS ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
FAM21A   30000 perm   7 sec   (4200 perm/sec)   p_kst 4.566667e-03   p_cons 4.064333e-01   p_joint 4.333333e-04

Joint ci ratio: 9.505257e-01	ci left: 2.286513e-04	ci right 6.494939e-04	k: 16	n:40000
Cons ci ratio: 2.359740e-02	ci left: 4.034026e-01	ci right 4.130607e-01	k: 16329	n:40000
KS ci ratio: 2.867557e-01	ci left: 3.983757e-03	ci right 5.339698e-03	k: 185	n:40000
FAM21A   40000 perm   10 sec   (4078 perm/sec)   p_kst 4.625000e-03   p_cons 4.082250e-01   p_joint 4.000000e-04

Joint ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
Cons ci ratio: 2.103684e-02	ci left: 4.055046e-01	ci right 4.141459e-01	k: 20491	n:50000
KS ci ratio: 2.556555e-01	ci left: 4.081954e-03	ci right 5.296654e-03	k: 233	n:50000
FAM21A   50000 perm   13 sec   (3989 perm/sec)   p_kst 4.660000e-03   p_cons 4.098200e-01   p_joint 3.800000e-04

Joint ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
Cons ci ratio: 1.916321e-02	ci left: 4.069094e-01	ci right 4.147992e-01	k: 24651	n:60000
KS ci ratio: 2.328815e-01	ci left: 4.152773e-03	ci right 5.262638e-03	k: 281	n:60000
FAM21A   60000 perm   15 sec   (3906 perm/sec)   p_kst 4.683333e-03   p_cons 4.108500e-01   p_joint 4.500000e-04

Joint ci ratio: 6.442691e-01	ci left: 3.602246e-04	ci right 7.119178e-04	k: 36	n:70000
Cons ci ratio: 1.773313e-02	ci left: 4.074374e-01	ci right 4.147414e-01	k: 28776	n:70000
KS ci ratio: 2.162680e-01	ci left: 4.166259e-03	ci right 5.189752e-03	k: 326	n:70000
FAM21A   70000 perm   18 sec   (3835 perm/sec)   p_kst 4.657143e-03   p_cons 4.110857e-01   p_joint 5.142857e-04

Joint ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
Cons ci ratio: 1.658782e-02	ci left: 4.076750e-01	ci right 4.145065e-01	k: 32887	n:80000
KS ci ratio: 2.024949e-01	ci left: 4.190358e-03	ci right 5.146109e-03	k: 372	n:80000
FAM21A   80000 perm   21 sec   (3767 perm/sec)   p_kst 4.650000e-03   p_cons 4.110875e-01   p_joint 5.375000e-04

Joint ci ratio: 5.382919e-01	ci left: 4.315412e-04	ci right 7.576105e-04	k: 52	n:90000
Cons ci ratio: 1.562874e-02	ci left: 4.081935e-01	ci right 4.146344e-01	k: 37027	n:90000
KS ci ratio: 1.899220e-01	ci left: 4.263630e-03	ci right 5.168748e-03	k: 423	n:90000
FAM21A   90000 perm   24 sec   (3702 perm/sec)   p_kst 4.700000e-03   p_cons 4.114111e-01   p_joint 5.777778e-04

Joint ci ratio: 1.566873e-01	ci left: 5.732465e-03	ci right 6.716506e-03	k: 621	n:100000
Cons ci ratio: 1.485253e-02	ci left: 4.075186e-01	ci right 4.136266e-01	k: 41057	n:100000
KS ci ratio: 1.801973e-01	ci left: 4.285509e-03	ci right 5.143608e-03	k: 470	n:100000
FAM21A   100000 perm   28 sec   (3628 perm/sec)   p_kst 4.700000e-03   p_cons 4.105700e-01   p_joint 6.210000e-03

Joint ci ratio: 2.461636e-01	ci left: 2.017033e-03	ci right 2.591530e-03	k: 252	n:110000
Cons ci ratio: 1.414241e-02	ci left: 4.083082e-01	ci right 4.141328e-01	k: 45234	n:110000
KS ci ratio: 1.703476e-01	ci left: 4.382706e-03	ci right 5.207373e-03	k: 526	n:110000
FAM21A   110000 perm   31 sec   (3567 perm/sec)   p_kst 4.781818e-03   p_cons 4.112182e-01   p_joint 2.290909e-03

Joint ci ratio: 3.359453e-01	ci left: 9.433210e-04	ci right 1.331436e-03	k: 135	n:120000
Cons ci ratio: 1.356932e-02	ci left: 4.073984e-01	ci right 4.129726e-01	k: 49222	n:120000
KS ci ratio: 1.637996e-01	ci left: 4.360830e-03	ci right 5.146731e-03	k: 569	n:120000
FAM21A   120000 perm   34 sec   (3512 perm/sec)   p_kst 4.741667e-03   p_cons 4.101833e-01   p_joint 1.125000e-03

Joint ci ratio: 2.634625e-01	ci left: 1.476211e-03	ci right 1.931094e-03	k: 220	n:130000
Cons ci ratio: 1.303759e-02	ci left: 4.074860e-01	ci right 4.128411e-01	k: 53321	n:130000
KS ci ratio: 1.565479e-01	ci left: 4.424133e-03	ci right 5.182831e-03	k: 623	n:130000
FAM21A   130000 perm   38 sec   (3458 perm/sec)   p_kst 4.792308e-03   p_cons 4.101615e-01   p_joint 1.692308e-03

Joint ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
Cons ci ratio: 1.256977e-02	ci left: 4.073364e-01	ci right 4.124960e-01	k: 57388	n:140000
KS ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
FAM21A   140000 perm   41 sec   (3404 perm/sec)   p_kst 4.735714e-03   p_cons 4.099143e-01   p_joint 5.428571e-04

Joint ci ratio: 2.457535e-01	ci left: 1.485362e-03	ci right 1.907608e-03	k: 253	n:150000
Cons ci ratio: 1.213857e-02	ci left: 4.076227e-01	ci right 4.126075e-01	k: 61517	n:150000
KS ci ratio: 1.468699e-01	ci left: 4.379415e-03	ci right 5.079940e-03	k: 708	n:150000
FAM21A   150000 perm   45 sec   (3358 perm/sec)   p_kst 4.720000e-03   p_cons 4.101133e-01   p_joint 1.686667e-03

Joint ci ratio: 2.066568e-01	ci left: 2.011920e-03	ci right 2.481409e-03	k: 358	n:160000
Cons ci ratio: 1.174905e-02	ci left: 4.078696e-01	ci right 4.126962e-01	k: 65645	n:160000
KS ci ratio: 1.439636e-01	ci left: 4.280341e-03	ci right 4.950304e-03	k: 737	n:160000
FAM21A   160000 perm   48 sec   (3310 perm/sec)   p_kst 4.606250e-03   p_cons 4.102812e-01   p_joint 2.237500e-03

Joint ci ratio: 2.872702e-01	ci left: 9.371329e-04	ci right 1.256744e-03	k: 185	n:170000
Cons ci ratio: 1.139754e-02	ci left: 4.079721e-01	ci right 4.126545e-01	k: 69753	n:170000
KS ci ratio: 1.393198e-01	ci left: 4.312257e-03	ci right 4.963637e-03	k: 787	n:170000
FAM21A   170000 perm   52 sec   (3264 perm/sec)   p_kst 4.629412e-03   p_cons 4.103118e-01   p_joint 1.088235e-03

Joint ci ratio: 2.820157e-01	ci left: 9.211819e-04	ci right 1.228584e-03	k: 192	n:180000
Cons ci ratio: 1.108025e-02	ci left: 4.078709e-01	ci right 4.124209e-01	k: 73826	n:180000
KS ci ratio: 1.351793e-01	ci left: 4.335567e-03	ci right 4.969438e-03	k: 836	n:180000
FAM21A   180000 perm   56 sec   (3223 perm/sec)   p_kst 4.644444e-03   p_cons 4.101444e-01   p_joint 1.066667e-03

Joint ci ratio: 2.729705e-01	ci left: 9.363612e-04	ci right 1.237090e-03	k: 205	n:190000
Cons ci ratio: 1.077306e-02	ci left: 4.084551e-01	ci right 4.128845e-01	k: 78027	n:190000
KS ci ratio: 1.310902e-01	ci left: 4.377043e-03	ci right 4.996113e-03	k: 889	n:190000
FAM21A   190000 perm   60 sec   (3177 perm/sec)   p_kst 4.678947e-03   p_cons 4.106684e-01   p_joint 1.078947e-03

Joint ci ratio: 2.665775e-01	ci left: 9.361619e-04	ci right 1.228609e-03	k: 215	n:200000
Cons ci ratio: 1.050709e-02	ci left: 4.081980e-01	ci right 4.125146e-01	k: 82071	n:200000
KS ci ratio: 1.277602e-01	ci left: 4.385583e-03	ci right 4.988911e-03	k: 936	n:200000
FAM21A   200000 perm   64 sec   (3130 perm/sec)   p_kst 4.680000e-03   p_cons 4.103550e-01   p_joint 1.075000e-03

Joint ci ratio: 2.635483e-01	ci left: 9.138088e-04	ci right 1.195494e-03	k: 220	n:210000
Cons ci ratio: 1.025262e-02	ci left: 4.083093e-01	ci right 4.125218e-01	k: 86187	n:210000
KS ci ratio: 1.254424e-01	ci left: 4.338128e-03	ci right 4.923294e-03	k: 971	n:210000
FAM21A   210000 perm   68 sec   (3089 perm/sec)   p_kst 4.623810e-03   p_cons 4.104143e-01   p_joint 1.047619e-03

Joint ci ratio: 2.572243e-01	ci left: 9.190095e-04	ci right 1.194409e-03	k: 231	n:220000
Cons ci ratio: 1.001936e-02	ci left: 4.082389e-01	ci right 4.123543e-01	k: 90265	n:220000
KS ci ratio: 1.225756e-01	ci left: 4.343546e-03	ci right 4.915081e-03	k: 1017	n:220000
FAM21A   220000 perm   72 sec   (3050 perm/sec)   p_kst 4.622727e-03   p_cons 4.102955e-01   p_joint 1.050000e-03

Joint ci ratio: 2.534314e-01	ci left: 9.075391e-04	ci right 1.174857e-03	k: 238	n:230000
Cons ci ratio: 9.791206e-03	ci left: 4.086754e-01	ci right 4.127008e-01	k: 94458	n:230000
KS ci ratio: 1.201808e-01	ci left: 4.327542e-03	ci right 4.885056e-03	k: 1058	n:230000
FAM21A   230000 perm   76 sec   (3012 perm/sec)   p_kst 4.600000e-03   p_cons 4.106870e-01   p_joint 1.034783e-03

Joint ci ratio: 2.468066e-01	ci left: 9.204977e-04	ci right 1.183458e-03	k: 251	n:240000
Cons ci ratio: 9.584632e-03	ci left: 4.087391e-01	ci right 4.126797e-01	k: 98570	n:240000
KS ci ratio: 1.169635e-01	ci left: 4.385778e-03	ci right 4.934623e-03	k: 1117	n:240000
FAM21A   240000 perm   81 sec   (2975 perm/sec)   p_kst 4.654167e-03   p_cons 4.107083e-01   p_joint 1.045833e-03

Joint ci ratio: 2.429811e-01	ci left: 9.137138e-04	ci right 1.170080e-03	k: 259	n:250000
Cons ci ratio: 9.387812e-03	ci left: 4.089425e-01	ci right 4.128036e-01	k: 102718	n:250000
KS ci ratio: 1.148276e-01	ci left: 4.373475e-03	ci right 4.910109e-03	k: 1159	n:250000
FAM21A   250000 perm   85 sec   (2938 perm/sec)   p_kst 4.636000e-03   p_cons 4.108720e-01   p_joint 1.036000e-03

Joint ci ratio: 2.379985e-01	ci left: 9.183298e-04	ci right 1.169929e-03	k: 270	n:260000
Cons ci ratio: 9.204173e-03	ci left: 4.090502e-01	ci right 4.128364e-01	k: 106845	n:260000
KS ci ratio: 1.124760e-01	ci left: 4.388370e-03	ci right 4.915073e-03	k: 1208	n:260000
FAM21A   260000 perm   90 sec   (2902 perm/sec)   p_kst 4.646154e-03   p_cons 4.109423e-01   p_joint 1.038462e-03

Joint ci ratio: 2.354087e-01	ci left: 9.052212e-04	ci right 1.150137e-03	k: 276	n:270000
Cons ci ratio: 9.032909e-03	ci left: 4.090433e-01	ci right 4.127586e-01	k: 110943	n:270000
KS ci ratio: 1.106617e-01	ci left: 4.369850e-03	ci right 4.885317e-03	k: 1248	n:270000
FAM21A   270000 perm   94 sec   (2870 perm/sec)   p_kst 4.622222e-03   p_cons 4.109000e-01   p_joint 1.022222e-03

Joint ci ratio: 2.281106e-01	ci left: 9.334476e-04	ci right 1.177069e-03	k: 294	n:280000
Cons ci ratio: 8.867853e-03	ci left: 4.092017e-01	ci right 4.128501e-01	k: 115087	n:280000
KS ci ratio: 1.086364e-01	ci left: 4.377038e-03	ci right 4.883299e-03	k: 1295	n:280000
FAM21A   280000 perm   99 sec   (2837 perm/sec)   p_kst 4.625000e-03   p_cons 4.110250e-01   p_joint 1.050000e-03

Joint ci ratio: 2.218065e-01	ci left: 9.565791e-04	ci right 1.198397e-03	k: 311	n:290000
Cons ci ratio: 8.715435e-03	ci left: 4.091326e-01	ci right 4.127174e-01	k: 119168	n:290000
KS ci ratio: 1.068384e-01	ci left: 4.373741e-03	ci right 4.870721e-03	k: 1339	n:290000
FAM21A   290000 perm   103 sec   (2805 perm/sec)   p_kst 4.617241e-03   p_cons 4.109241e-01   p_joint 1.072414e-03

Joint ci ratio: 2.159977e-01	ci left: 9.782546e-04	ci right 1.218217e-03	k: 328	n:300000
Cons ci ratio: 8.568373e-03	ci left: 4.091953e-01	ci right 4.127198e-01	k: 123287	n:300000
KS ci ratio: 1.044840e-01	ci left: 4.425916e-03	ci right 4.917062e-03	k: 1400	n:300000
FAM21A   300000 perm   108 sec   (2773 perm/sec)   p_kst 4.666667e-03   p_cons 4.109567e-01   p_joint 1.093333e-03

Joint ci ratio: 1.127527e-01	ci left: 3.664817e-03	ci right 4.105828e-03	k: 1203	n:310000
Cons ci ratio: 8.430478e-03	ci left: 4.091415e-01	ci right 4.126085e-01	k: 127371	n:310000
KS ci ratio: 1.022787e-01	ci left: 4.474836e-03	ci right 4.960300e-03	k: 1461	n:310000
FAM21A   310000 perm   113 sec   (2742 perm/sec)   p_kst 4.712903e-03   p_cons 4.108742e-01   p_joint 3.880645e-03

Joint ci ratio: 2.067733e-01	ci left: 1.005905e-03	ci right 1.240780e-03	k: 358	n:320000
Cons ci ratio: 8.297533e-03	ci left: 4.091790e-01	ci right 4.125914e-01	k: 131483	n:320000
KS ci ratio: 1.004062e-01	ci left: 4.502520e-03	ci right 4.981517e-03	k: 1516	n:320000
FAM21A   320000 perm   118 sec   (2710 perm/sec)   p_kst 4.737500e-03   p_cons 4.108844e-01   p_joint 1.118750e-03

Joint ci ratio: 2.045082e-01	ci left: 9.984163e-04	ci right 1.228670e-03	k: 366	n:330000
Cons ci ratio: 8.171351e-03	ci left: 4.091752e-01	ci right 4.125354e-01	k: 135582	n:330000
KS ci ratio: 9.904535e-02	ci left: 4.490176e-03	ci right 4.961010e-03	k: 1558	n:330000
FAM21A   330000 perm   123 sec   (2680 perm/sec)   p_kst 4.721212e-03   p_cons 4.108545e-01   p_joint 1.109091e-03

Joint ci ratio: 2.017780e-01	ci left: 9.969668e-04	ci right 1.223439e-03	k: 376	n:340000
Cons ci ratio: 8.052370e-03	ci left: 4.090751e-01	ci right 4.123853e-01	k: 139648	n:340000
KS ci ratio: 9.779971e-02	ci left: 4.472862e-03	ci right 4.935642e-03	k: 1598	n:340000
FAM21A   340000 perm   128 sec   (2649 perm/sec)   p_kst 4.700000e-03   p_cons 4.107294e-01   p_joint 1.105882e-03

Joint ci ratio: 1.994124e-01	ci left: 9.929045e-04	ci right 1.215488e-03	k: 385	n:350000
Cons ci ratio: 7.932584e-03	ci left: 4.093379e-01	ci right 4.126007e-01	k: 143839	n:350000
KS ci ratio: 9.668885e-02	ci left: 4.448206e-03	ci right 4.902912e-03	k: 1635	n:350000
FAM21A   350000 perm   134 sec   (2621 perm/sec)   p_kst 4.671429e-03   p_cons 4.109686e-01   p_joint 1.100000e-03

Joint ci ratio: 1.369036e-01	ci left: 2.116634e-03	ci right 2.430352e-03	k: 817	n:360000
Cons ci ratio: 7.823460e-03	ci left: 4.092478e-01	ci right 4.124648e-01	k: 147908	n:360000
KS ci ratio: 9.544320e-02	ci left: 4.441219e-03	ci right 4.889034e-03	k: 1678	n:360000
FAM21A   360000 perm   139 sec   (2592 perm/sec)   p_kst 4.661111e-03   p_cons 4.108556e-01   p_joint 2.269444e-03

Joint ci ratio: 1.348579e-01	ci left: 2.124699e-03	ci right 2.434530e-03	k: 842	n:370000
Cons ci ratio: 7.714325e-03	ci left: 4.094383e-01	ci right 4.126117e-01	k: 152079	n:370000
KS ci ratio: 9.407996e-02	ci left: 4.450480e-03	ci right 4.892467e-03	k: 1727	n:370000
FAM21A   370000 perm   144 sec   (2564 perm/sec)   p_kst 4.667568e-03   p_cons 4.110243e-01   p_joint 2.275676e-03

Joint ci ratio: 1.328246e-01	ci left: 2.134917e-03	ci right 2.441173e-03	k: 868	n:380000
Cons ci ratio: 7.614224e-03	ci left: 4.093272e-01	ci right 4.124584e-01	k: 156139	n:380000
KS ci ratio: 9.248634e-02	ci left: 4.487578e-03	ci right 4.925291e-03	k: 1787	n:380000
FAM21A   380000 perm   150 sec   (2536 perm/sec)   p_kst 4.702632e-03   p_cons 4.108921e-01   p_joint 2.284211e-03

Joint ci ratio: 1.519958e-01	ci left: 1.573142e-03	ci right 1.834351e-03	k: 663	n:390000
Cons ci ratio: 7.517443e-03	ci left: 4.092528e-01	ci right 4.123434e-01	k: 160211	n:390000
KS ci ratio: 9.134426e-02	ci left: 4.485244e-03	ci right 4.917038e-03	k: 1832	n:390000
FAM21A   390000 perm   156 sec   (2504 perm/sec)   p_kst 4.697436e-03   p_cons 4.107974e-01   p_joint 1.700000e-03

Joint ci ratio: 1.500866e-01	ci left: 1.574707e-03	ci right 1.832597e-03	k: 680	n:400000
Cons ci ratio: 7.420734e-03	ci left: 4.094122e-01	ci right 4.124641e-01	k: 164375	n:400000
KS ci ratio: 9.029180e-02	ci left: 4.478170e-03	ci right 4.904054e-03	k: 1875	n:400000
FAM21A   400000 perm   161 sec   (2477 perm/sec)   p_kst 4.687500e-03   p_cons 4.109375e-01   p_joint 1.700000e-03

Joint ci ratio: 1.830670e-01	ci left: 1.014820e-03	ci right 1.221603e-03	k: 457	n:410000
Cons ci ratio: 7.329508e-03	ci left: 4.094422e-01	ci right 4.124566e-01	k: 168489	n:410000
KS ci ratio: 8.915826e-02	ci left: 4.483393e-03	ci right 4.904142e-03	k: 1923	n:410000
FAM21A   410000 perm   167 sec   (2451 perm/sec)   p_kst 4.690244e-03   p_cons 4.109488e-01   p_joint 1.114634e-03

Joint ci ratio: 1.811009e-01	ci left: 1.013382e-03	ci right 1.217411e-03	k: 467	n:420000
Cons ci ratio: 7.243490e-03	ci left: 4.093425e-01	ci right 4.123207e-01	k: 172549	n:420000
KS ci ratio: 8.813376e-02	ci left: 4.481413e-03	ci right 4.896894e-03	k: 1968	n:420000
FAM21A   420000 perm   173 sec   (2427 perm/sec)   p_kst 4.685714e-03   p_cons 4.108310e-01   p_joint 1.111905e-03

Joint ci ratio: 1.797624e-01	ci left: 1.005358e-03	ci right 1.206113e-03	k: 474	n:430000
Cons ci ratio: 7.157851e-03	ci left: 4.094219e-01	ci right 4.123653e-01	k: 176684	n:430000
KS ci ratio: 8.723085e-02	ci left: 4.470451e-03	ci right 4.880453e-03	k: 2009	n:430000
FAM21A   430000 perm   179 sec   (2402 perm/sec)   p_kst 4.672093e-03   p_cons 4.108930e-01   p_joint 1.102326e-03

Joint ci ratio: 1.777164e-01	ci left: 1.006391e-03	ci right 1.204819e-03	k: 485	n:440000
Cons ci ratio: 7.074681e-03	ci left: 4.095320e-01	ci right 4.124419e-01	k: 180834	n:440000
KS ci ratio: 8.620746e-02	ci left: 4.475575e-03	ci right 4.880990e-03	k: 2057	n:440000
FAM21A   440000 perm   185 sec   (2377 perm/sec)   p_kst 4.675000e-03   p_cons 4.109864e-01   p_joint 1.102273e-03

Joint ci ratio: 1.752101e-01	ci left: 1.013764e-03	ci right 1.210528e-03	k: 499	n:450000
Cons ci ratio: 6.994344e-03	ci left: 4.096374e-01	ci right 4.125148e-01	k: 184984	n:450000
KS ci ratio: 8.532108e-02	ci left: 4.469624e-03	ci right 4.870128e-03	k: 2100	n:450000
FAM21A   450000 perm   191 sec   (2353 perm/sec)   p_kst 4.666667e-03   p_cons 4.110756e-01   p_joint 1.108889e-03

Joint ci ratio: 1.405102e-01	ci left: 1.570427e-03	ci right 1.809833e-03	k: 776	n:460000
Cons ci ratio: 6.917925e-03	ci left: 4.096515e-01	ci right 4.124974e-01	k: 189094	n:460000
KS ci ratio: 8.416620e-02	ci left: 4.495875e-03	ci right 4.893012e-03	k: 2158	n:460000
FAM21A   460000 perm   197 sec   (2331 perm/sec)   p_kst 4.691304e-03   p_cons 4.110739e-01   p_joint 1.686957e-03

Joint ci ratio: 1.388229e-01	ci left: 1.576027e-03	ci right 1.813163e-03	k: 795	n:470000
Cons ci ratio: 6.845732e-03	ci left: 4.095397e-01	ci right 4.123550e-01	k: 193145	n:470000
KS ci ratio: 8.313235e-02	ci left: 4.512710e-03	ci right 4.906200e-03	k: 2212	n:470000
FAM21A   470000 perm   204 sec   (2308 perm/sec)   p_kst 4.706383e-03   p_cons 4.109468e-01   p_joint 1.691489e-03

Joint ci ratio: 2.376173e-01	ci left: 4.993746e-04	ci right 6.359378e-04	k: 271	n:480000
Cons ci ratio: 6.775052e-03	ci left: 4.094827e-01	ci right 4.122684e-01	k: 197220	n:480000
KS ci ratio: 8.217211e-02	ci left: 4.524791e-03	ci right 4.914558e-03	k: 2264	n:480000
FAM21A   480000 perm   210 sec   (2286 perm/sec)   p_kst 4.716667e-03   p_cons 4.108750e-01   p_joint 5.645833e-04

Joint ci ratio: 1.349759e-01	ci left: 1.602363e-03	ci right 1.836245e-03	k: 841	n:490000
Cons ci ratio: 6.705188e-03	ci left: 4.095240e-01	ci right 4.122812e-01	k: 201342	n:490000
KS ci ratio: 8.113890e-02	ci left: 4.548400e-03	ci right 4.935042e-03	k: 2322	n:490000
FAM21A   490000 perm   216 sec   (2264 perm/sec)   p_kst 4.738776e-03   p_cons 4.109020e-01   p_joint 1.716327e-03

Joint ci ratio: 1.337897e-01	ci left: 1.599307e-03	ci right 1.830528e-03	k: 856	n:500000
Cons ci ratio: 6.638731e-03	ci left: 4.094698e-01	ci right 4.121992e-01	k: 205417	n:500000
KS ci ratio: 8.044983e-02	ci left: 4.535815e-03	ci right 4.917959e-03	k: 2362	n:500000
FAM21A   500000 perm   223 sec   (2243 perm/sec)   p_kst 4.724000e-03   p_cons 4.108340e-01   p_joint 1.712000e-03

Joint ci ratio: 1.320290e-01	ci left: 1.611548e-03	ci right 1.841231e-03	k: 879	n:510000
Cons ci ratio: 6.574531e-03	ci left: 4.093944e-01	ci right 4.120968e-01	k: 209480	n:510000
KS ci ratio: 7.957862e-02	ci left: 4.546799e-03	ci right 4.925528e-03	k: 2414	n:510000
FAM21A   510000 perm   229 sec   (2222 perm/sec)   p_kst 4.733333e-03   p_cons 4.107451e-01   p_joint 1.723529e-03

Joint ci ratio: 6.582869e-02	ci left: 6.550048e-03	ci right 6.997782e-03	k: 3521	n:520000
Cons ci ratio: 6.512520e-03	ci left: 4.092951e-01	ci right 4.119713e-01	k: 213529	n:520000
KS ci ratio: 7.883149e-02	ci left: 4.546070e-03	ci right 4.921020e-03	k: 2460	n:520000
FAM21A   520000 perm   236 sec   (2202 perm/sec)   p_kst 4.730769e-03   p_cons 4.106327e-01   p_joint 6.771154e-03

Outputting figure to mutsig2_images.part000000000061/FAM21A.2_4150_520000_0.0047308_0.41063_0.0067712.png
                gene_name: FAM21A
               theta_stop: 0.079 
                    nperm: 520000 
                     p_ks: 0.0047 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.0068 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0070 

Current progress: 92 percent done.
FAM40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
Cons ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
KS ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
FAM40B   10000 perm   2 sec   (5739 perm/sec)   p_kst 7.334000e-01   p_cons 7.567000e-01   p_joint 8.791000e-01

Outputting figure to mutsig2_images.part000000000061/FAM40B.2_2612_10000_0.7334_0.7567_0.8791.png
                gene_name: FAM40B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 94 percent done.
FAM45A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
KS ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
FAM45A   10000 perm   2 sec   (6331 perm/sec)   p_kst 3.610000e-01   p_cons 2.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM45A.2_1110_10000_0.361_0.2219_1.png
                gene_name: FAM45A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
FAM48A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
FAM48A   10000 perm   2 sec   (5508 perm/sec)   p_kst 7.141000e-01   p_cons 7.115000e-01   p_joint 8.559000e-01

Outputting figure to mutsig2_images.part000000000061/FAM48A.2_2443_10000_0.7141_0.7115_0.8559.png
                gene_name: FAM48A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 98 percent done.
FAM50A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KS ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
FAM50A   10000 perm   2 sec   (6335 perm/sec)   p_kst 8.406000e-01   p_cons 4.162000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM50A.2_1072_10000_0.8406_0.4162_1.png
                gene_name: FAM50A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000061
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 61 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4421938: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000062> was used as the working directory.
Started at Wed Oct 24 17:44:13 2012
Results reported at Wed Oct 24 23:39:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000062.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000062.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 62  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000062.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  21507.69 sec.
    Max Memory :      5421 MB
    Max Swap   :      7743 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
62
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 62
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 62: processing genes 5520 - 5609
Calculating significance of each gene.
Using projection method.
5520	FAM53B	9.538992e-01
5521	FAM53C	6.155904e-01
5522	FAM54A	1
5523	FAM54B	1
5524	FAM55A	2.639446e-02
5525	FAM55B	1
5526	FAM55C	3.753174e-01
5527	FAM55D	8.064622e-02
5528	FAM57A	1
5529	FAM57B	1
In gene FAM58A the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 601     n = 1	mu =   5.69e-07
5530	FAM58A	3.635995e-02
5531	FAM58B	1
5532	FAM59A	9.932502e-01
5533	FAM5B	6.942009e-01
5534	FAM5C	1
5535	FAM60A	5.298239e-01
5536	FAM63A	8.780780e-01
5537	FAM63B	1
5538	FAM64A	1
5539	FAM65A	9.994194e-01
5540	FAM65B	1.605026e-01
5541	FAM65C	9.963280e-01
5542	FAM69A	5.032646e-01
5543	FAM69B	1
5544	FAM69C	1
5545	FAM70A	7.660130e-01
5546	FAM70B	5.237354e-01
5547	FAM71A	4.160406e-01
5548	FAM71B	8.101173e-06
5549	FAM71C	3.131838e-01
5550	FAM71D	1.083444e-02
5551	FAM71E1	2.216336e-01
5552	FAM71F1	8.120169e-01
5553	FAM71F2	1
5554	FAM72A	1
5555	FAM72B	5.419590e-01
5556	FAM72D	2.713386e-01
5557	FAM73A	6.674238e-01
5558	FAM73B	9.354222e-01
5559	FAM75A6	1
5560	FAM75C1	1.403089e-01
5561	FAM76A	5.865229e-01
5562	FAM76B	1
5563	FAM78A	1
5564	FAM78B	2.421375e-02
5565	FAM81A	4.264508e-01
5566	FAM81B	8.859128e-01
5567	FAM82A1	1
5568	FAM82A2	1
5569	FAM82B	2.983828e-02
5570	FAM83A	1
5571	FAM83B	8.938462e-01
5572	FAM83C	4.771309e-02
5573	FAM83D	8.975637e-01
5574	FAM83E	1
5575	FAM83F	5.261471e-01
5576	FAM83G	6.358450e-01
5577	FAM83H	9.401807e-01
5578	FAM84A	6.253948e-01
5579	FAM84B	7.066926e-01
5580	FAM86A	1
5581	FAM86B1	1
5582	FAM86B2	1
5583	FAM86C	4.351127e-01
5584	FAM89A	1
5585	FAM89B	1
5586	FAM8A1	6.087622e-01
5587	FAM90A1	1
5588	FAM91A1	4.548597e-01
5589	FAM92A1	1
5590	FAM92B	4.613250e-01
5591	FAM96A	5.160229e-01
5592	FAM96B	1
5593	FAM98A	3.802064e-01
5594	FAM98B	1
5595	FAM98C	7.750696e-02
5596	FAM9A	7.566024e-01
5597	FAM9B	6.615715e-01
5598	FAM9C	5.463582e-01
5599	FANCA	9.998306e-01
5600	FANCB	6.203833e-01
5601	FANCC	9.592161e-01
In gene FANCD2 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 4555    n = 1	mu =   3.35e-07
    LUAD-64-1680-TP	categ 6	N = 4555    n = 1	mu =   5.35e-07
5602	FANCD2	6.334559e-01
5603	FANCE	6.379232e-01
5604	FANCF	6.348533e-01
In gene FANCG the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 1925    n = 1	mu =   6.02e-07
5605	FANCG	5.026536e-01
5606	FANCI	9.267933e-01
5607	FANCL	7.292682e-01
5608	FANCM	8.024263e-01
5609	FANK1	2.954435e-01
Done

Running MutSig 2:
Scatter job 62: processing genes 5520 - 5609
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
Cons ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
FAM5C   10000 perm   2 sec   (4271 perm/sec)   p_kst 3.670000e-01   p_cons 3.033000e-01   p_joint 3.311000e-01

Outputting figure to mutsig2_images.part000000000062/FAM5C.42_2329_10000_0.367_0.3033_0.3311.png
                gene_name: FAM5C
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 2 percent done.
FAM75A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
Cons ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
FAM75A6   10000 perm   2 sec   (4462 perm/sec)   p_kst 8.500000e-02   p_cons 7.531000e-01   p_joint 2.615000e-01

Joint ci ratio: 5.373702e-02	ci left: 2.044716e-01	ci right 2.158128e-01	k: 4202	n:20000
Cons ci ratio: 1.605867e-02	ci left: 7.426276e-01	ci right 7.547000e-01	k: 14974	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
FAM75A6   20000 perm   5 sec   (4108 perm/sec)   p_kst 9.130000e-02   p_cons 7.487000e-01   p_joint 2.101000e-01

Outputting figure to mutsig2_images.part000000000062/FAM75A6.30_4048_20000_0.0913_0.7487_0.2101.png
                gene_name: FAM75A6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 4 percent done.
FAM75C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
Cons ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
KS ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
FAM75C1   10000 perm   2 sec   (4947 perm/sec)   p_kst 6.223000e-01   p_cons 2.050000e-01   p_joint 4.342000e-01

Outputting figure to mutsig2_images.part000000000062/FAM75C1.20_3583_10000_0.6223_0.205_0.4342.png
                gene_name: FAM75C1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 7 percent done.
FAM71B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471055e-02	ci left: 8.699939e-01	ci right 8.829859e-01	k: 8766	n:10000
Cons ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
KS ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
FAM71B   10000 perm   2 sec   (5894 perm/sec)   p_kst 7.805000e-01   p_cons 5.005000e-01   p_joint 8.766000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71B.19_1826_10000_0.7805_0.5005_0.8766.png
                gene_name: FAM71B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 9 percent done.
FANCM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
Cons ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
KS ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
FANCM   10000 perm   2 sec   (4599 perm/sec)   p_kst 3.025000e-01   p_cons 4.331000e-01   p_joint 4.278000e-01

Outputting figure to mutsig2_images.part000000000062/FANCM.17_6239_10000_0.3025_0.4331_0.4278.png
                gene_name: FANCM
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 11 percent done.
FAM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
FAM5B   10000 perm   2 sec   (5121 perm/sec)   p_kst 3.000000e-04   p_cons 3.804000e-01   p_joint 9.700000e-03

Joint ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
Cons ci ratio: 3.420442e-02	ci left: 3.895615e-01	ci right 4.031687e-01	k: 7927	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
FAM5B   20000 perm   4 sec   (4681 perm/sec)   p_kst 2.500000e-04   p_cons 3.963500e-01   p_joint 4.350000e-03

Joint ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
Cons ci ratio: 2.800764e-02	ci left: 3.894620e-01	ci right 4.005584e-01	k: 11850	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
FAM5B   30000 perm   7 sec   (4508 perm/sec)   p_kst 2.000000e-04   p_cons 3.950000e-01   p_joint 3.100000e-03

Joint ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
Cons ci ratio: 2.427476e-02	ci left: 3.898304e-01	ci right 3.994349e-01	k: 15785	n:40000
KS ci ratio: 1.385773e+00	ci left: 7.036188e-05	ci right 3.605334e-04	k: 7	n:40000
FAM5B   40000 perm   9 sec   (4393 perm/sec)   p_kst 1.750000e-04   p_cons 3.946250e-01   p_joint 3.000000e-03

Joint ci ratio: 3.487776e-01	ci left: 2.081393e-03	ci right 2.977924e-03	k: 125	n:50000
Cons ci ratio: 2.173518e-02	ci left: 3.898330e-01	ci right 3.984193e-01	k: 19706	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
FAM5B   50000 perm   12 sec   (4307 perm/sec)   p_kst 1.800000e-04   p_cons 3.941200e-01   p_joint 2.500000e-03

Joint ci ratio: 3.502471e-01	ci left: 1.719231e-03	ci right 2.463582e-03	k: 124	n:60000
Cons ci ratio: 1.981401e-02	ci left: 3.908690e-01	ci right 3.987079e-01	k: 23687	n:60000
KS ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
FAM5B   60000 perm   14 sec   (4223 perm/sec)   p_kst 2.000000e-04   p_cons 3.947833e-01   p_joint 2.066667e-03

Joint ci ratio: 3.668399e-01	ci left: 1.330579e-03	ci right 1.940500e-03	k: 113	n:70000
Cons ci ratio: 1.836671e-02	ci left: 3.905772e-01	ci right 3.978316e-01	k: 27594	n:70000
KS ci ratio: 1.012024e+00	ci left: 1.093460e-04	ci right 3.355433e-04	k: 14	n:70000
FAM5B   70000 perm   17 sec   (4152 perm/sec)   p_kst 2.000000e-04   p_cons 3.942000e-01   p_joint 1.614286e-03

Joint ci ratio: 4.380474e-01	ci left: 7.818886e-04	ci right 1.230570e-03	k: 79	n:80000
Cons ci ratio: 1.677422e-02	ci left: 4.022822e-01	ci right 4.090997e-01	k: 32455	n:80000
KS ci ratio: 9.238431e-01	ci left: 1.237938e-04	ci right 3.402114e-04	k: 17	n:80000
FAM5B   80000 perm   20 sec   (4084 perm/sec)   p_kst 2.125000e-04   p_cons 4.056875e-01   p_joint 9.875000e-04

Joint ci ratio: 4.249805e-01	ci left: 7.445294e-04	ci right 1.155402e-03	k: 84	n:90000
Cons ci ratio: 1.583057e-02	ci left: 4.020013e-01	ci right 4.084270e-01	k: 36469	n:90000
KS ci ratio: 8.764364e-01	ci left: 1.271073e-04	ci right 3.296566e-04	k: 19	n:90000
FAM5B   90000 perm   22 sec   (4024 perm/sec)   p_kst 2.111111e-04   p_cons 4.052111e-01   p_joint 9.333333e-04

Joint ci ratio: 4.041250e-01	ci left: 7.506936e-04	ci right 1.139194e-03	k: 93	n:100000
Cons ci ratio: 1.500923e-02	ci left: 4.024547e-01	ci right 4.085508e-01	k: 40550	n:100000
KS ci ratio: 8.764466e-01	ci left: 1.143962e-04	ci right 2.966927e-04	k: 19	n:100000
FAM5B   100000 perm   25 sec   (3964 perm/sec)   p_kst 1.900000e-04   p_cons 4.055000e-01   p_joint 9.300000e-04

Joint ci ratio: 4.020080e-01	ci left: 6.906132e-04	ci right 1.045647e-03	k: 94	n:110000
Cons ci ratio: 1.430267e-02	ci left: 4.028689e-01	ci right 4.086815e-01	k: 44635	n:110000
KS ci ratio: 8.764550e-01	ci left: 1.039962e-04	ci right 2.697219e-04	k: 19	n:110000
FAM5B   110000 perm   28 sec   (3908 perm/sec)   p_kst 1.727273e-04   p_cons 4.057727e-01   p_joint 8.545455e-04

Joint ci ratio: 4.041571e-01	ci left: 6.255692e-04	ci right 9.493445e-04	k: 93	n:120000
Cons ci ratio: 1.369230e-02	ci left: 4.030448e-01	ci right 4.086097e-01	k: 48699	n:120000
KS ci ratio: 8.356667e-01	ci left: 1.083309e-04	ci right 2.674937e-04	k: 21	n:120000
FAM5B   120000 perm   31 sec   (3853 perm/sec)   p_kst 1.750000e-04   p_cons 4.058250e-01   p_joint 7.750000e-04

Joint ci ratio: 3.978657e-01	ci left: 5.981959e-04	ci right 9.017143e-04	k: 96	n:130000
Cons ci ratio: 1.316675e-02	ci left: 4.027294e-01	ci right 4.080748e-01	k: 52702	n:130000
KS ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
FAM5B   130000 perm   34 sec   (3800 perm/sec)   p_kst 2.000000e-04   p_cons 4.054000e-01   p_joint 7.384615e-04

Joint ci ratio: 3.938341e-01	ci left: 5.683292e-04	ci right 8.530105e-04	k: 98	n:140000
Cons ci ratio: 1.268913e-02	ci left: 4.027767e-01	ci right 4.079273e-01	k: 56749	n:140000
KS ci ratio: 7.278477e-01	ci left: 1.329025e-04	ci right 2.890428e-04	k: 28	n:140000
FAM5B   140000 perm   37 sec   (3748 perm/sec)   p_kst 2.000000e-04   p_cons 4.053500e-01   p_joint 7.000000e-04

Joint ci ratio: 4.063577e-01	ci left: 4.944610e-04	ci right 7.521467e-04	k: 92	n:150000
Cons ci ratio: 1.227321e-02	ci left: 4.023012e-01	ci right 4.072758e-01	k: 60718	n:150000
KS ci ratio: 7.156169e-01	ci left: 1.294821e-04	ci right 2.776472e-04	k: 29	n:150000
FAM5B   150000 perm   41 sec   (3699 perm/sec)   p_kst 1.933333e-04   p_cons 4.047867e-01   p_joint 6.133333e-04

Joint ci ratio: 3.958573e-01	ci left: 4.916546e-04	ci right 7.395243e-04	k: 97	n:160000
Cons ci ratio: 1.188147e-02	ci left: 4.024622e-01	ci right 4.072788e-01	k: 64779	n:160000
KS ci ratio: 7.039824e-01	ci left: 1.265089e-04	ci right 2.676572e-04	k: 30	n:160000
FAM5B   160000 perm   44 sec   (3652 perm/sec)   p_kst 1.875000e-04   p_cons 4.048687e-01   p_joint 6.062500e-04

Joint ci ratio: 3.918835e-01	ci left: 4.733322e-04	ci right 7.089489e-04	k: 99	n:170000
Cons ci ratio: 1.152823e-02	ci left: 4.024712e-01	ci right 4.071438e-01	k: 68817	n:170000
KS ci ratio: 7.039865e-01	ci left: 1.190670e-04	ci right 2.519132e-04	k: 30	n:170000
FAM5B   170000 perm   47 sec   (3605 perm/sec)   p_kst 1.764706e-04   p_cons 4.048059e-01   p_joint 5.823529e-04

Joint ci ratio: 2.272731e-01	ci left: 1.462554e-03	ci right 1.842675e-03	k: 296	n:180000
Cons ci ratio: 1.121223e-02	ci left: 4.021593e-01	ci right 4.066993e-01	k: 72797	n:180000
KS ci ratio: 6.722091e-01	ci left: 1.262015e-04	ci right 2.574586e-04	k: 33	n:180000
FAM5B   180000 perm   51 sec   (3556 perm/sec)   p_kst 1.833333e-04   p_cons 4.044278e-01   p_joint 1.644444e-03

Joint ci ratio: 2.292237e-01	ci left: 1.360758e-03	ci right 1.717886e-03	k: 291	n:190000
Cons ci ratio: 1.091143e-02	ci left: 4.022973e-01	ci right 4.067162e-01	k: 76856	n:190000
KS ci ratio: 6.722125e-01	ci left: 1.195591e-04	ci right 2.439086e-04	k: 33	n:190000
FAM5B   190000 perm   54 sec   (3510 perm/sec)   p_kst 1.736842e-04   p_cons 4.045053e-01   p_joint 1.531579e-03

Joint ci ratio: 2.308213e-01	ci left: 1.273865e-03	ci right 1.610851e-03	k: 287	n:200000
Cons ci ratio: 1.063836e-02	ci left: 4.022081e-01	ci right 4.065147e-01	k: 80872	n:200000
KS ci ratio: 6.625413e-01	ci left: 1.177327e-04	ci right 2.375499e-04	k: 34	n:200000
FAM5B   200000 perm   58 sec   (3466 perm/sec)   p_kst 1.700000e-04   p_cons 4.043600e-01   p_joint 1.435000e-03

Joint ci ratio: 2.261591e-01	ci left: 1.267077e-03	ci right 1.594552e-03	k: 299	n:210000
Cons ci ratio: 1.038400e-02	ci left: 4.021667e-01	ci right 4.063693e-01	k: 84896	n:210000
KS ci ratio: 6.443857e-01	ci left: 1.200693e-04	ci right 2.373216e-04	k: 36	n:210000
FAM5B   210000 perm   61 sec   (3425 perm/sec)   p_kst 1.714286e-04   p_cons 4.042667e-01   p_joint 1.423810e-03

Joint ci ratio: 2.406581e-01	ci left: 1.059671e-03	ci right 1.353724e-03	k: 264	n:220000
Cons ci ratio: 1.014235e-02	ci left: 4.023528e-01	ci right 4.064589e-01	k: 88969	n:220000
KS ci ratio: 6.443884e-01	ci left: 1.146114e-04	ci right 2.265346e-04	k: 36	n:220000
FAM5B   220000 perm   65 sec   (3382 perm/sec)   p_kst 1.636364e-04   p_cons 4.044045e-01   p_joint 1.200000e-03

Joint ci ratio: 2.439111e-01	ci left: 9.850066e-04	ci right 1.262595e-03	k: 257	n:230000
Cons ci ratio: 9.923901e-03	ci left: 4.021805e-01	ci right 4.061959e-01	k: 92963	n:230000
KS ci ratio: 6.197512e-01	ci left: 1.205801e-04	ci right 2.317940e-04	k: 39	n:230000
FAM5B   230000 perm   69 sec   (3341 perm/sec)   p_kst 1.695652e-04   p_cons 4.041870e-01   p_joint 1.117391e-03

Joint ci ratio: 2.345473e-01	ci left: 1.026224e-03	ci right 1.302716e-03	k: 278	n:240000
Cons ci ratio: 9.705455e-03	ci left: 4.026937e-01	ci right 4.066252e-01	k: 97118	n:240000
KS ci ratio: 5.779159e-01	ci left: 1.367670e-04	ci right 2.508818e-04	k: 45	n:240000
FAM5B   240000 perm   73 sec   (3301 perm/sec)   p_kst 1.875000e-04   p_cons 4.046583e-01   p_joint 1.158333e-03

Joint ci ratio: 2.320679e-01	ci left: 1.007771e-03	ci right 1.276010e-03	k: 284	n:250000
Cons ci ratio: 9.520713e-03	ci left: 4.021596e-01	ci right 4.060107e-01	k: 101021	n:250000
KS ci ratio: 5.383953e-01	ci left: 1.553481e-04	ci right 2.727555e-04	k: 52	n:250000
FAM5B   250000 perm   77 sec   (3263 perm/sec)   p_kst 2.080000e-04   p_cons 4.040840e-01   p_joint 1.136000e-03

Joint ci ratio: 2.316665e-01	ci left: 9.726317e-04	ci right 1.231004e-03	k: 285	n:260000
Cons ci ratio: 9.334476e-03	ci left: 4.022667e-01	ci right 4.060431e-01	k: 105080	n:260000
KS ci ratio: 5.333880e-01	ci left: 1.526984e-04	ci right 2.666274e-04	k: 53	n:260000
FAM5B   260000 perm   81 sec   (3226 perm/sec)   p_kst 2.038462e-04   p_cons 4.041538e-01   p_joint 1.096154e-03

Joint ci ratio: 2.254440e-01	ci left: 9.924764e-04	ci right 1.248056e-03	k: 301	n:270000
Cons ci ratio: 9.162561e-03	ci left: 4.021668e-01	ci right 4.058723e-01	k: 109085	n:270000
KS ci ratio: 5.146650e-01	ci left: 1.598973e-04	ci right 2.735104e-04	k: 57	n:270000
FAM5B   270000 perm   85 sec   (3187 perm/sec)   p_kst 2.111111e-04   p_cons 4.040185e-01   p_joint 1.114815e-03

Joint ci ratio: 2.243359e-01	ci left: 9.671401e-04	ci right 1.214801e-03	k: 304	n:280000
Cons ci ratio: 8.997337e-03	ci left: 4.022067e-01	ci right 4.058453e-01	k: 113127	n:280000
KS ci ratio: 5.146670e-01	ci left: 1.541865e-04	ci right 2.637425e-04	k: 57	n:280000
FAM5B   280000 perm   89 sec   (3151 perm/sec)   p_kst 2.035714e-04   p_cons 4.040250e-01   p_joint 1.085714e-03

Joint ci ratio: 2.200484e-01	ci left: 9.728673e-04	ci right 1.216590e-03	k: 316	n:290000
Cons ci ratio: 8.839918e-03	ci left: 4.022891e-01	ci right 4.058645e-01	k: 117182	n:290000
KS ci ratio: 5.060166e-01	ci left: 1.548777e-04	ci right 2.624257e-04	k: 59	n:290000
FAM5B   290000 perm   93 sec   (3115 perm/sec)   p_kst 2.034483e-04   p_cons 4.040759e-01   p_joint 1.089655e-03

Joint ci ratio: 2.169904e-01	ci left: 9.687963e-04	ci right 1.207677e-03	k: 325	n:300000
Cons ci ratio: 8.688799e-03	ci left: 4.024599e-01	ci right 4.059753e-01	k: 121265	n:300000
KS ci ratio: 5.060184e-01	ci left: 1.497150e-04	ci right 2.536784e-04	k: 59	n:300000
FAM5B   300000 perm   97 sec   (3079 perm/sec)   p_kst 1.966667e-04   p_cons 4.042167e-01   p_joint 1.083333e-03

Joint ci ratio: 1.778584e-01	ci left: 1.425371e-03	ci right 1.706659e-03	k: 484	n:310000
Cons ci ratio: 8.545288e-03	ci left: 4.026136e-01	ci right 4.060720e-01	k: 125346	n:310000
KS ci ratio: 4.899486e-01	ci left: 1.561677e-04	ci right 2.600067e-04	k: 63	n:310000
FAM5B   310000 perm   102 sec   (3046 perm/sec)   p_kst 2.032258e-04   p_cons 4.043419e-01   p_joint 1.561290e-03

Joint ci ratio: 1.751704e-01	ci left: 1.425632e-03	ci right 1.702270e-03	k: 499	n:320000
Cons ci ratio: 8.410241e-03	ci left: 4.026677e-01	ci right 4.060716e-01	k: 129398	n:320000
KS ci ratio: 4.899502e-01	ci left: 1.512874e-04	ci right 2.518817e-04	k: 63	n:320000
FAM5B   320000 perm   106 sec   (3014 perm/sec)   p_kst 1.968750e-04   p_cons 4.043687e-01   p_joint 1.559375e-03

Joint ci ratio: 1.762368e-01	ci left: 1.365045e-03	ci right 1.631711e-03	k: 493	n:330000
Cons ci ratio: 8.281453e-03	ci left: 4.027158e-01	ci right 4.060677e-01	k: 133449	n:330000
KS ci ratio: 4.824697e-01	ci left: 1.520202e-04	ci right 2.510473e-04	k: 65	n:330000
FAM5B   330000 perm   111 sec   (2982 perm/sec)   p_kst 1.969697e-04   p_cons 4.043909e-01   p_joint 1.493939e-03

Joint ci ratio: 1.859132e-01	ci left: 1.184488e-03	ci right 1.430020e-03	k: 443	n:340000
Cons ci ratio: 8.157311e-03	ci left: 4.028261e-01	ci right 4.061284e-01	k: 137522	n:340000
KS ci ratio: 4.824711e-01	ci left: 1.475490e-04	ci right 2.436637e-04	k: 65	n:340000
FAM5B   340000 perm   115 sec   (2951 perm/sec)   p_kst 1.911765e-04   p_cons 4.044765e-01   p_joint 1.302941e-03

Joint ci ratio: 1.830494e-01	ci left: 1.188799e-03	ci right 1.431007e-03	k: 457	n:350000
Cons ci ratio: 8.039685e-03	ci left: 4.028648e-01	ci right 4.061196e-01	k: 141572	n:350000
KS ci ratio: 4.753230e-01	ci left: 1.483575e-04	ci right 2.431012e-04	k: 67	n:350000
FAM5B   350000 perm   120 sec   (2919 perm/sec)   p_kst 1.914286e-04   p_cons 4.044914e-01   p_joint 1.305714e-03

Joint ci ratio: 1.812780e-01	ci left: 1.179636e-03	ci right 1.417397e-03	k: 466	n:360000
Cons ci ratio: 7.927462e-03	ci left: 4.028739e-01	ci right 4.060832e-01	k: 145612	n:360000
KS ci ratio: 4.718667e-01	ci left: 1.466825e-04	ci right 2.394556e-04	k: 68	n:360000
FAM5B   360000 perm   125 sec   (2889 perm/sec)   p_kst 1.888889e-04   p_cons 4.044778e-01   p_joint 1.294444e-03

Joint ci ratio: 1.795571e-01	ci left: 1.170979e-03	ci right 1.404511e-03	k: 475	n:370000
Cons ci ratio: 7.818188e-03	ci left: 4.029828e-01	ci right 4.061484e-01	k: 149689	n:370000
KS ci ratio: 4.619309e-01	ci left: 1.498721e-04	ci right 2.420394e-04	k: 71	n:370000
FAM5B   370000 perm   129 sec   (2858 perm/sec)   p_kst 1.918919e-04   p_cons 4.045649e-01   p_joint 1.283784e-03

Joint ci ratio: 1.951653e-01	ci left: 9.570428e-04	ci right 1.166475e-03	k: 402	n:380000
Cons ci ratio: 7.714365e-03	ci left: 4.030205e-01	ci right 4.061441e-01	k: 153741	n:380000
KS ci ratio: 4.496093e-01	ci left: 1.552458e-04	ci right 2.473968e-04	k: 75	n:380000
FAM5B   380000 perm   134 sec   (2828 perm/sec)   p_kst 1.973684e-04   p_cons 4.045816e-01   p_joint 1.057895e-03

Joint ci ratio: 1.930223e-01	ci left: 9.544587e-04	ci right 1.160762e-03	k: 411	n:390000
Cons ci ratio: 7.613274e-03	ci left: 4.031385e-01	ci right 4.062219e-01	k: 157825	n:390000
KS ci ratio: 4.438076e-01	ci left: 1.558164e-04	ci right 2.467549e-04	k: 77	n:390000
FAM5B   390000 perm   139 sec   (2799 perm/sec)   p_kst 1.974359e-04   p_cons 4.046795e-01   p_joint 1.053846e-03

Joint ci ratio: 1.902709e-01	ci left: 9.591581e-04	ci right 1.163180e-03	k: 423	n:400000
Cons ci ratio: 7.517811e-03	ci left: 4.031384e-01	ci right 4.061830e-01	k: 161864	n:400000
KS ci ratio: 4.328467e-01	ci left: 1.608174e-04	ci right 2.516828e-04	k: 81	n:400000
FAM5B   400000 perm   144 sec   (2772 perm/sec)   p_kst 2.025000e-04   p_cons 4.046600e-01   p_joint 1.057500e-03

Joint ci ratio: 1.874188e-01	ci left: 9.659727e-04	ci right 1.168014e-03	k: 436	n:410000
Cons ci ratio: 7.427355e-03	ci left: 4.030410e-01	ci right 4.060481e-01	k: 165863	n:410000
KS ci ratio: 4.226596e-01	ci left: 1.656008e-04	ci right 2.563445e-04	k: 85	n:410000
FAM5B   410000 perm   149 sec   (2746 perm/sec)   p_kst 2.073171e-04   p_cons 4.045439e-01   p_joint 1.063415e-03

Joint ci ratio: 1.932645e-01	ci left: 8.840141e-04	ci right 1.075359e-03	k: 410	n:420000
Cons ci ratio: 7.338454e-03	ci left: 4.030556e-01	ci right 4.060267e-01	k: 169907	n:420000
KS ci ratio: 4.226607e-01	ci left: 1.616578e-04	ci right 2.502412e-04	k: 85	n:420000
FAM5B   420000 perm   154 sec   (2721 perm/sec)   p_kst 2.023810e-04   p_cons 4.045405e-01   p_joint 9.761905e-04

Joint ci ratio: 1.916400e-01	ci left: 8.789501e-04	ci right 1.067413e-03	k: 417	n:430000
Cons ci ratio: 7.251376e-03	ci left: 4.031557e-01	ci right 4.060921e-01	k: 173988	n:430000
KS ci ratio: 4.178302e-01	ci left: 1.620576e-04	ci right 2.495620e-04	k: 87	n:430000
FAM5B   430000 perm   160 sec   (2696 perm/sec)   p_kst 2.023256e-04   p_cons 4.046233e-01   p_joint 9.697674e-04

Joint ci ratio: 1.909575e-01	ci left: 8.654650e-04	ci right 1.050299e-03	k: 420	n:440000
Cons ci ratio: 7.169930e-03	ci left: 4.030766e-01	ci right 4.059792e-01	k: 177992	n:440000
KS ci ratio: 4.131615e-01	ci left: 1.624447e-04	ci right 2.489082e-04	k: 89	n:440000
FAM5B   440000 perm   165 sec   (2670 perm/sec)   p_kst 2.022727e-04   p_cons 4.045273e-01   p_joint 9.545455e-04

Joint ci ratio: 1.889486e-01	ci left: 8.652814e-04	ci right 1.047909e-03	k: 429	n:450000
Cons ci ratio: 7.087112e-03	ci left: 4.032765e-01	ci right 4.061469e-01	k: 182120	n:450000
KS ci ratio: 4.021406e-01	ci left: 1.688067e-04	ci right 2.556211e-04	k: 94	n:450000
FAM5B   450000 perm   170 sec   (2645 perm/sec)   p_kst 2.088889e-04   p_cons 4.047111e-01   p_joint 9.533333e-04

Joint ci ratio: 1.916461e-01	ci left: 8.216249e-04	ci right 9.978026e-04	k: 417	n:460000
Cons ci ratio: 7.008458e-03	ci left: 4.033745e-01	ci right 4.062136e-01	k: 186205	n:460000
KS ci ratio: 4.000411e-01	ci left: 1.670915e-04	ci right 2.524563e-04	k: 95	n:460000
FAM5B   460000 perm   176 sec   (2621 perm/sec)   p_kst 2.065217e-04   p_cons 4.047935e-01   p_joint 9.065217e-04

Joint ci ratio: 1.949432e-01	ci left: 7.757959e-04	ci right 9.453483e-04	k: 403	n:470000
Cons ci ratio: 6.931722e-03	ci left: 4.035132e-01	ci right 4.063220e-01	k: 190311	n:470000
KS ci ratio: 4.000420e-01	ci left: 1.635363e-04	ci right 2.470850e-04	k: 95	n:470000
FAM5B   470000 perm   181 sec   (2597 perm/sec)   p_kst 2.021277e-04   p_cons 4.049170e-01   p_joint 8.574468e-04

Joint ci ratio: 1.930414e-01	ci left: 7.754906e-04	ci right 9.431287e-04	k: 411	n:480000
Cons ci ratio: 6.858846e-03	ci left: 4.035484e-01	ci right 4.063278e-01	k: 194370	n:480000
KS ci ratio: 3.939338e-01	ci left: 1.657554e-04	ci right 2.488082e-04	k: 98	n:480000
FAM5B   480000 perm   187 sec   (2573 perm/sec)   p_kst 2.041667e-04   p_cons 4.049375e-01   p_joint 8.562500e-04

Joint ci ratio: 1.907402e-01	ci left: 7.790922e-04	ci right 9.452684e-04	k: 421	n:490000
Cons ci ratio: 6.788767e-03	ci left: 4.035435e-01	ci right 4.062944e-01	k: 198410	n:490000
KS ci ratio: 3.843464e-01	ci left: 1.715785e-04	ci right 2.549279e-04	k: 103	n:490000
FAM5B   490000 perm   192 sec   (2550 perm/sec)   p_kst 2.102041e-04   p_cons 4.049184e-01   p_joint 8.591837e-04

Joint ci ratio: 1.891780e-01	ci left: 7.768445e-04	ci right 9.410281e-04	k: 428	n:500000
Cons ci ratio: 6.719538e-03	ci left: 4.036289e-01	ci right 4.063522e-01	k: 202495	n:500000
KS ci ratio: 3.825123e-01	ci left: 1.699541e-04	ci right 2.520213e-04	k: 104	n:500000
FAM5B   500000 perm   198 sec   (2527 perm/sec)   p_kst 2.080000e-04   p_cons 4.049900e-01   p_joint 8.560000e-04

Joint ci ratio: 1.898451e-01	ci left: 7.560082e-04	ci right 9.164165e-04	k: 425	n:510000
Cons ci ratio: 6.653142e-03	ci left: 4.036562e-01	ci right 4.063527e-01	k: 206552	n:510000
KS ci ratio: 3.789206e-01	ci left: 1.701680e-04	ci right 2.513748e-04	k: 106	n:510000
FAM5B   510000 perm   204 sec   (2504 perm/sec)   p_kst 2.078431e-04   p_cons 4.050039e-01   p_joint 8.333333e-04

Joint ci ratio: 1.885225e-01	ci left: 7.524614e-04	ci right 9.108776e-04	k: 431	n:520000
Cons ci ratio: 6.585680e-03	ci left: 4.039017e-01	ci right 4.065724e-01	k: 210723	n:520000
KS ci ratio: 3.737174e-01	ci left: 1.721191e-04	ci right 2.528531e-04	k: 109	n:520000
FAM5B   520000 perm   210 sec   (2482 perm/sec)   p_kst 2.096154e-04   p_cons 4.052365e-01   p_joint 8.288462e-04

Joint ci ratio: 1.868009e-01	ci left: 7.526493e-04	ci right 9.094939e-04	k: 439	n:530000
Cons ci ratio: 6.525487e-03	ci left: 4.037497e-01	ci right 4.063948e-01	k: 214688	n:530000
KS ci ratio: 3.703657e-01	ci left: 1.722923e-04	ci right 2.522071e-04	k: 111	n:530000
FAM5B   530000 perm   215 sec   (2460 perm/sec)   p_kst 2.094340e-04   p_cons 4.050717e-01   p_joint 8.283019e-04

Joint ci ratio: 1.855405e-01	ci left: 7.493045e-04	ci right 9.042800e-04	k: 445	n:540000
Cons ci ratio: 6.466367e-03	ci left: 4.036440e-01	ci right 4.062644e-01	k: 218675	n:540000
KS ci ratio: 3.655026e-01	ci left: 1.741437e-04	ci right 2.536035e-04	k: 114	n:540000
FAM5B   540000 perm   221 sec   (2438 perm/sec)   p_kst 2.111111e-04   p_cons 4.049537e-01   p_joint 8.240741e-04

Joint ci ratio: 1.838986e-01	ci left: 7.495537e-04	ci right 9.030558e-04	k: 453	n:550000
Cons ci ratio: 6.407205e-03	ci left: 4.036641e-01	ci right 4.062605e-01	k: 222729	n:550000
KS ci ratio: 3.639241e-01	ci left: 1.726290e-04	ci right 2.509767e-04	k: 115	n:550000
FAM5B   550000 perm   228 sec   (2417 perm/sec)   p_kst 2.090909e-04   p_cons 4.049618e-01   p_joint 8.236364e-04

Joint ci ratio: 1.821024e-01	ci left: 7.515041e-04	ci right 9.037366e-04	k: 462	n:560000
Cons ci ratio: 6.350767e-03	ci left: 4.035979e-01	ci right 4.061710e-01	k: 226735	n:560000
KS ci ratio: 3.623659e-01	ci left: 1.711691e-04	ci right 2.484430e-04	k: 116	n:560000
FAM5B   560000 perm   234 sec   (2397 perm/sec)   p_kst 2.071429e-04   p_cons 4.048839e-01   p_joint 8.250000e-04

Joint ci ratio: 1.809341e-01	ci left: 7.483677e-04	ci right 8.988858e-04	k: 468	n:570000
Cons ci ratio: 6.295381e-03	ci left: 4.035657e-01	ci right 4.061160e-01	k: 230759	n:570000
KS ci ratio: 3.623666e-01	ci left: 1.681661e-04	ci right 2.440844e-04	k: 116	n:570000
FAM5B   570000 perm   240 sec   (2376 perm/sec)   p_kst 2.035088e-04   p_cons 4.048404e-01   p_joint 8.210526e-04

Joint ci ratio: 1.799778e-01	ci left: 7.436959e-04	ci right 8.923977e-04	k: 473	n:580000
Cons ci ratio: 6.242112e-03	ci left: 4.034812e-01	ci right 4.060094e-01	k: 234752	n:580000
KS ci ratio: 3.593086e-01	ci left: 1.684023e-04	ci right 2.436357e-04	k: 118	n:580000
FAM5B   580000 perm   246 sec   (2356 perm/sec)   p_kst 2.034483e-04   p_cons 4.047448e-01   p_joint 8.155172e-04

Joint ci ratio: 1.786636e-01	ci left: 7.424227e-04	ci right 8.896687e-04	k: 480	n:590000
Cons ci ratio: 6.186951e-03	ci left: 4.036505e-01	ci right 4.061572e-01	k: 238893	n:590000
KS ci ratio: 3.563268e-01	ci left: 1.686332e-04	ci right 2.431995e-04	k: 120	n:590000
FAM5B   590000 perm   253 sec   (2337 perm/sec)   p_kst 2.033898e-04   p_cons 4.049034e-01   p_joint 8.135593e-04

Joint ci ratio: 1.768346e-01	ci left: 7.459743e-04	ci right 8.922482e-04	k: 490	n:600000
Cons ci ratio: 6.134775e-03	ci left: 4.036926e-01	ci right 4.061784e-01	k: 242961	n:600000
KS ci ratio: 3.534180e-01	ci left: 1.688588e-04	ci right 2.427755e-04	k: 122	n:600000
FAM5B   600000 perm   259 sec   (2318 perm/sec)   p_kst 2.033333e-04   p_cons 4.049350e-01   p_joint 8.166667e-04

Joint ci ratio: 1.752357e-01	ci left: 7.478493e-04	ci right 8.930246e-04	k: 499	n:610000
Cons ci ratio: 6.085324e-03	ci left: 4.036203e-01	ci right 4.060855e-01	k: 246960	n:610000
KS ci ratio: 3.519903e-01	ci left: 1.675847e-04	ci right 2.405796e-04	k: 123	n:610000
FAM5B   610000 perm   265 sec   (2300 perm/sec)   p_kst 2.016393e-04   p_cons 4.048525e-01   p_joint 8.180328e-04

Joint ci ratio: 1.771985e-01	ci left: 7.188268e-04	ci right 8.600986e-04	k: 488	n:620000
Cons ci ratio: 6.035333e-03	ci left: 4.036875e-01	ci right 4.061328e-01	k: 251044	n:620000
KS ci ratio: 3.491856e-01	ci left: 1.678235e-04	ci right 2.402080e-04	k: 125	n:620000
FAM5B   620000 perm   272 sec   (2282 perm/sec)   p_kst 2.016129e-04   p_cons 4.049097e-01   p_joint 7.870968e-04

Joint ci ratio: 1.755898e-01	ci left: 7.210719e-04	ci right 8.613619e-04	k: 497	n:630000
Cons ci ratio: 5.988941e-03	ci left: 4.035606e-01	ci right 4.059863e-01	k: 255007	n:630000
KS ci ratio: 3.424561e-01	ci left: 1.724070e-04	ci right 2.450182e-04	k: 130	n:630000
FAM5B   630000 perm   278 sec   (2263 perm/sec)   p_kst 2.063492e-04   p_cons 4.047730e-01   p_joint 7.888889e-04

Joint ci ratio: 1.741962e-01	ci left: 7.217580e-04	ci right 8.609498e-04	k: 505	n:640000
Cons ci ratio: 5.942946e-03	ci left: 4.034909e-01	ci right 4.058975e-01	k: 259004	n:640000
KS ci ratio: 3.386007e-01	ci left: 1.739999e-04	ci right 2.462766e-04	k: 133	n:640000
FAM5B   640000 perm   285 sec   (2246 perm/sec)   p_kst 2.078125e-04   p_cons 4.046938e-01   p_joint 7.890625e-04

Joint ci ratio: 1.763020e-01	ci left: 6.930014e-04	ci right 8.284351e-04	k: 493	n:650000
Cons ci ratio: 5.896808e-03	ci left: 4.035203e-01	ci right 4.059083e-01	k: 263064	n:650000
KS ci ratio: 3.348726e-01	ci left: 1.755481e-04	ci right 2.474918e-04	k: 136	n:650000
FAM5B   650000 perm   292 sec   (2228 perm/sec)   p_kst 2.092308e-04   p_cons 4.047138e-01   p_joint 7.584615e-04

Joint ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
Cons ci ratio: 5.851857e-03	ci left: 4.035382e-01	ci right 4.059081e-01	k: 267117	n:660000
KS ci ratio: 3.300880e-01	ci left: 1.784431e-04	ci right 2.503066e-04	k: 140	n:660000
FAM5B   660000 perm   299 sec   (2210 perm/sec)   p_kst 2.121212e-04   p_cons 4.047227e-01   p_joint 7.590909e-04

Joint ci ratio: 1.730058e-01	ci left: 6.994336e-04	ci right 8.333020e-04	k: 512	n:670000
Cons ci ratio: 5.808027e-03	ci left: 4.035468e-01	ci right 4.058988e-01	k: 271164	n:670000
KS ci ratio: 3.255028e-01	ci left: 1.812588e-04	ci right 2.530303e-04	k: 144	n:670000
FAM5B   670000 perm   306 sec   (2192 perm/sec)   p_kst 2.149254e-04   p_cons 4.047224e-01   p_joint 7.641791e-04

Joint ci ratio: 1.755949e-01	ci left: 6.680503e-04	ci right 7.980286e-04	k: 497	n:680000
Cons ci ratio: 5.764991e-03	ci left: 4.035698e-01	ci right 4.059045e-01	k: 275221	n:680000
KS ci ratio: 3.232810e-01	ci left: 1.812949e-04	ci right 2.524891e-04	k: 146	n:680000
FAM5B   680000 perm   313 sec   (2175 perm/sec)   p_kst 2.147059e-04   p_cons 4.047368e-01   p_joint 7.308824e-04

Joint ci ratio: 1.742012e-01	ci left: 6.694551e-04	ci right 7.985642e-04	k: 505	n:690000
Cons ci ratio: 5.723035e-03	ci left: 4.035807e-01	ci right 4.058984e-01	k: 279270	n:690000
KS ci ratio: 3.221872e-01	ci left: 1.799993e-04	ci right 2.503961e-04	k: 147	n:690000
FAM5B   690000 perm   320 sec   (2158 perm/sec)   p_kst 2.130435e-04   p_cons 4.047391e-01   p_joint 7.318841e-04

Joint ci ratio: 1.730087e-01	ci left: 6.694570e-04	ci right 7.975902e-04	k: 512	n:700000
Cons ci ratio: 5.681628e-03	ci left: 4.036212e-01	ci right 4.059224e-01	k: 283340	n:700000
KS ci ratio: 3.200321e-01	ci left: 1.800548e-04	ci right 2.499057e-04	k: 149	n:700000
FAM5B   700000 perm   327 sec   (2141 perm/sec)   p_kst 2.128571e-04   p_cons 4.047714e-01   p_joint 7.314286e-04

Joint ci ratio: 1.784904e-01	ci left: 6.182847e-04	ci right 7.407782e-04	k: 481	n:710000
Cons ci ratio: 5.640349e-03	ci left: 4.037255e-01	ci right 4.060105e-01	k: 287456	n:710000
KS ci ratio: 3.158481e-01	ci left: 1.827031e-04	ci right 2.524677e-04	k: 153	n:710000
FAM5B   710000 perm   334 sec   (2125 perm/sec)   p_kst 2.154930e-04   p_cons 4.048676e-01   p_joint 6.774648e-04

Joint ci ratio: 1.766667e-01	ci left: 6.229692e-04	ci right 7.449951e-04	k: 491	n:720000
Cons ci ratio: 5.602185e-03	ci left: 4.036354e-01	ci right 4.059043e-01	k: 291434	n:720000
KS ci ratio: 3.148279e-01	ci left: 1.814445e-04	ci right 2.504597e-04	k: 154	n:720000
FAM5B   720000 perm   341 sec   (2109 perm/sec)   p_kst 2.138889e-04   p_cons 4.047694e-01   p_joint 6.819444e-04

Joint ci ratio: 1.750725e-01	ci left: 6.262215e-04	ci right 7.476605e-04	k: 500	n:730000
Cons ci ratio: 5.564151e-03	ci left: 4.036025e-01	ci right 4.058558e-01	k: 295452	n:730000
KS ci ratio: 3.128162e-01	ci left: 1.814830e-04	ci right 2.499835e-04	k: 156	n:730000
FAM5B   730000 perm   349 sec   (2094 perm/sec)   p_kst 2.136986e-04   p_cons 4.047288e-01   p_joint 6.849315e-04

Joint ci ratio: 1.736911e-01	ci left: 6.280981e-04	ci right 7.488391e-04	k: 508	n:740000
Cons ci ratio: 5.525843e-03	ci left: 4.036611e-01	ci right 4.058991e-01	k: 299537	n:740000
KS ci ratio: 3.089055e-01	ci left: 1.840143e-04	ci right 2.524310e-04	k: 160	n:740000
FAM5B   740000 perm   356 sec   (2079 perm/sec)   p_kst 2.162162e-04   p_cons 4.047797e-01   p_joint 6.864865e-04

Joint ci ratio: 1.684731e-01	ci left: 6.605645e-04	ci right 7.833448e-04	k: 540	n:750000
Cons ci ratio: 5.692870e-03	ci left: 3.862226e-01	ci right 3.884289e-01	k: 290494	n:750000
KS ci ratio: 3.079508e-01	ci left: 1.827909e-04	ci right 2.505015e-04	k: 161	n:750000
FAM5B   750000 perm   363 sec   (2064 perm/sec)   p_kst 2.146667e-04   p_cons 3.873253e-01   p_joint 7.200000e-04

Joint ci ratio: 1.675467e-01	ci left: 6.594356e-04	ci right 7.812641e-04	k: 546	n:760000
Cons ci ratio: 5.654686e-03	ci left: 3.862809e-01	ci right 3.884726e-01	k: 294406	n:760000
KS ci ratio: 3.070050e-01	ci left: 1.816001e-04	ci right 2.486225e-04	k: 162	n:760000
FAM5B   760000 perm   371 sec   (2049 perm/sec)   p_kst 2.131579e-04   p_cons 3.873763e-01   p_joint 7.184211e-04

Joint ci ratio: 1.666354e-01	ci left: 6.583378e-04	ci right 7.792356e-04	k: 552	n:770000
Cons ci ratio: 5.617567e-03	ci left: 3.863117e-01	ci right 3.884892e-01	k: 298298	n:770000
KS ci ratio: 3.051387e-01	ci left: 1.816396e-04	ci right 2.481899e-04	k: 164	n:770000
FAM5B   770000 perm   378 sec   (2035 perm/sec)   p_kst 2.129870e-04   p_cons 3.874000e-01   p_joint 7.168831e-04

Joint ci ratio: 1.655907e-01	ci left: 6.584989e-04	ci right 7.785925e-04	k: 559	n:780000
Cons ci ratio: 5.581155e-03	ci left: 3.863430e-01	ci right 3.885065e-01	k: 302191	n:780000
KS ci ratio: 3.042184e-01	ci left: 1.804949e-04	ci right 2.463877e-04	k: 165	n:780000
FAM5B   780000 perm   386 sec   (2020 perm/sec)   p_kst 2.115385e-04   p_cons 3.874244e-01   p_joint 7.166667e-04

Joint ci ratio: 1.667879e-01	ci left: 6.404575e-04	ci right 7.581902e-04	k: 551	n:790000
Cons ci ratio: 5.546240e-03	ci left: 3.863053e-01	ci right 3.884550e-01	k: 306030	n:790000
KS ci ratio: 3.033065e-01	ci left: 1.793795e-04	ci right 2.446309e-04	k: 166	n:790000
FAM5B   790000 perm   394 sec   (2006 perm/sec)   p_kst 2.101266e-04   p_cons 3.873797e-01   p_joint 6.974684e-04

Joint ci ratio: 1.581375e-01	ci left: 7.068050e-04	ci right 8.293564e-04	k: 613	n:800000
Cons ci ratio: 5.512379e-03	ci left: 3.862336e-01	ci right 3.883697e-01	k: 309841	n:800000
KS ci ratio: 3.158520e-01	ci left: 1.621487e-04	ci right 2.240656e-04	k: 153	n:800000
FAM5B   800000 perm   402 sec   (1991 perm/sec)   p_kst 1.912500e-04   p_cons 3.873012e-01   p_joint 7.662500e-04

Joint ci ratio: 1.689470e-01	ci left: 6.080851e-04	ci right 7.214612e-04	k: 537	n:810000
Cons ci ratio: 5.477662e-03	ci left: 3.862908e-01	ci right 3.884137e-01	k: 313755	n:810000
KS ci ratio: 3.138208e-01	ci left: 1.624210e-04	ci right 2.239629e-04	k: 155	n:810000
FAM5B   810000 perm   410 sec   (1978 perm/sec)   p_kst 1.913580e-04   p_cons 3.873519e-01   p_joint 6.629630e-04

Joint ci ratio: 1.684783e-01	ci left: 6.041734e-04	ci right 7.164759e-04	k: 540	n:820000
Cons ci ratio: 5.444544e-03	ci left: 3.862637e-01	ci right 3.883737e-01	k: 317601	n:820000
KS ci ratio: 3.118282e-01	ci left: 1.626878e-04	ci right 2.238615e-04	k: 157	n:820000
FAM5B   820000 perm   418 sec   (1964 perm/sec)   p_kst 1.914634e-04   p_cons 3.873183e-01   p_joint 6.585366e-04

Joint ci ratio: 1.680134e-01	ci left: 6.003563e-04	ci right 7.116103e-04	k: 543	n:830000
Cons ci ratio: 5.412432e-03	ci left: 3.862012e-01	ci right 3.882984e-01	k: 321417	n:830000
KS ci ratio: 3.118286e-01	ci left: 1.607277e-04	ci right 2.211644e-04	k: 157	n:830000
FAM5B   830000 perm   426 sec   (1950 perm/sec)   p_kst 1.891566e-04   p_cons 3.872494e-01   p_joint 6.542169e-04

Joint ci ratio: 1.673994e-01	ci left: 5.977712e-04	ci right 7.081004e-04	k: 547	n:840000
Cons ci ratio: 5.380072e-03	ci left: 3.862117e-01	ci right 3.882963e-01	k: 325293	n:840000
KS ci ratio: 3.108466e-01	ci left: 1.599117e-04	ci right 2.198147e-04	k: 158	n:840000
FAM5B   840000 perm   434 sec   (1936 perm/sec)   p_kst 1.880952e-04   p_cons 3.872536e-01   p_joint 6.511905e-04

Joint ci ratio: 1.661906e-01	ci left: 5.997575e-04	ci right 7.095740e-04	k: 555	n:850000
Cons ci ratio: 5.348046e-03	ci left: 3.862430e-01	ci right 3.883154e-01	k: 329187	n:850000
KS ci ratio: 3.089098e-01	ci left: 1.602004e-04	ci right 2.197640e-04	k: 160	n:850000
FAM5B   850000 perm   442 sec   (1923 perm/sec)   p_kst 1.882353e-04   p_cons 3.872788e-01   p_joint 6.529412e-04

Joint ci ratio: 1.651541e-01	ci left: 6.005857e-04	ci right 7.097999e-04	k: 562	n:860000
Cons ci ratio: 5.317759e-03	ci left: 3.861691e-01	ci right 3.882293e-01	k: 332991	n:860000
KS ci ratio: 3.051421e-01	ci left: 1.626305e-04	ci right 2.222169e-04	k: 164	n:860000
FAM5B   860000 perm   450 sec   (1910 perm/sec)   p_kst 1.906977e-04   p_cons 3.871988e-01   p_joint 6.534884e-04

Joint ci ratio: 1.647162e-01	ci left: 5.969882e-04	ci right 7.052318e-04	k: 565	n:870000
Cons ci ratio: 5.286839e-03	ci left: 3.861992e-01	ci right 3.882475e-01	k: 336884	n:870000
KS ci ratio: 3.042218e-01	ci left: 1.618228e-04	ci right 2.208997e-04	k: 165	n:870000
FAM5B   870000 perm   458 sec   (1898 perm/sec)   p_kst 1.896552e-04   p_cons 3.872230e-01   p_joint 6.494253e-04

Joint ci ratio: 1.747341e-01	ci left: 5.216499e-04	ci right 6.225937e-04	k: 502	n:880000
Cons ci ratio: 5.255157e-03	ci left: 3.863456e-01	ci right 3.883824e-01	k: 340880	n:880000
KS ci ratio: 3.006211e-01	ci left: 1.641845e-04	ci right 2.232788e-04	k: 169	n:880000
FAM5B   880000 perm   467 sec   (1885 perm/sec)   p_kst 1.920455e-04   p_cons 3.873636e-01   p_joint 5.704545e-04

Joint ci ratio: 1.738721e-01	ci left: 5.211616e-04	ci right 6.214611e-04	k: 507	n:890000
Cons ci ratio: 5.224792e-03	ci left: 3.864203e-01	ci right 3.884456e-01	k: 344815	n:890000
KS ci ratio: 2.997409e-01	ci left: 1.633787e-04	ci right 2.219780e-04	k: 170	n:890000
FAM5B   890000 perm   475 sec   (1872 perm/sec)   p_kst 1.910112e-04   p_cons 3.874326e-01   p_joint 5.696629e-04

Joint ci ratio: 1.728543e-01	ci left: 5.217483e-04	ci right 6.215116e-04	k: 513	n:900000
Cons ci ratio: 5.195311e-03	ci left: 3.864600e-01	ci right 3.884741e-01	k: 348720	n:900000
KS ci ratio: 2.988685e-01	ci left: 1.625911e-04	ci right 2.207059e-04	k: 171	n:900000
FAM5B   900000 perm   484 sec   (1859 perm/sec)   p_kst 1.900000e-04   p_cons 3.874667e-01   p_joint 5.700000e-04

Joint ci ratio: 1.747358e-01	ci left: 5.044523e-04	ci right 6.020692e-04	k: 502	n:910000
Cons ci ratio: 5.165750e-03	ci left: 3.865516e-01	ci right 3.885546e-01	k: 352673	n:910000
KS ci ratio: 2.988688e-01	ci left: 1.608043e-04	ci right 2.182806e-04	k: 171	n:910000
FAM5B   910000 perm   493 sec   (1847 perm/sec)   p_kst 1.879121e-04   p_cons 3.875527e-01   p_joint 5.516484e-04

Joint ci ratio: 1.754356e-01	ci left: 4.948116e-04	ci right 5.909871e-04	k: 498	n:920000
Cons ci ratio: 5.138040e-03	ci left: 3.865163e-01	ci right 3.885084e-01	k: 356511	n:920000
KS ci ratio: 2.988691e-01	ci left: 1.590564e-04	ci right 2.159080e-04	k: 171	n:920000
FAM5B   920000 perm   501 sec   (1835 perm/sec)   p_kst 1.858696e-04   p_cons 3.875120e-01   p_joint 5.413043e-04

Joint ci ratio: 1.743902e-01	ci left: 4.956602e-04	ci right 5.913661e-04	k: 504	n:930000
Cons ci ratio: 5.111304e-03	ci left: 3.864323e-01	ci right 3.884136e-01	k: 360303	n:930000
KS ci ratio: 2.971465e-01	ci left: 1.593359e-04	ci right 2.158972e-04	k: 173	n:930000
FAM5B   930000 perm   510 sec   (1822 perm/sec)   p_kst 1.860215e-04   p_cons 3.874226e-01   p_joint 5.419355e-04

Joint ci ratio: 1.726884e-01	ci left: 5.005636e-04	ci right 5.961748e-04	k: 514	n:940000
Cons ci ratio: 5.083670e-03	ci left: 3.864724e-01	ci right 3.884432e-01	k: 364210	n:940000
KS ci ratio: 2.946173e-01	ci left: 1.605955e-04	ci right 2.170281e-04	k: 176	n:940000
FAM5B   940000 perm   519 sec   (1810 perm/sec)   p_kst 1.872340e-04   p_cons 3.874574e-01   p_joint 5.468085e-04

Joint ci ratio: 1.726889e-01	ci left: 4.952944e-04	ci right 5.898994e-04	k: 514	n:950000
Cons ci ratio: 5.057321e-03	ci left: 3.864328e-01	ci right 3.883931e-01	k: 368042	n:950000
KS ci ratio: 2.946176e-01	ci left: 1.589050e-04	ci right 2.147437e-04	k: 176	n:950000
FAM5B   950000 perm   528 sec   (1799 perm/sec)   p_kst 1.852632e-04   p_cons 3.874126e-01   p_joint 5.410526e-04

Joint ci ratio: 1.730259e-01	ci left: 4.881417e-04	ci right 5.815814e-04	k: 512	n:960000
Cons ci ratio: 5.031476e-03	ci left: 3.863847e-01	ci right 3.883347e-01	k: 371865	n:960000
KS ci ratio: 2.929671e-01	ci left: 1.591796e-04	ci right 2.147432e-04	k: 178	n:960000
FAM5B   960000 perm   537 sec   (1787 perm/sec)   p_kst 1.854167e-04   p_cons 3.873594e-01   p_joint 5.333333e-04

Joint ci ratio: 1.728579e-01	ci left: 4.840955e-04	ci right 5.766614e-04	k: 513	n:970000
Cons ci ratio: 5.005600e-03	ci left: 3.863778e-01	ci right 3.883177e-01	k: 375727	n:970000
KS ci ratio: 2.913440e-01	ci left: 1.594493e-04	ci right 2.147418e-04	k: 180	n:970000
FAM5B   970000 perm   546 sec   (1777 perm/sec)   p_kst 1.855670e-04   p_cons 3.873474e-01   p_joint 5.288660e-04

Joint ci ratio: 1.718577e-01	ci left: 4.850141e-04	ci right 5.771633e-04	k: 519	n:980000
Cons ci ratio: 4.980772e-03	ci left: 3.863088e-01	ci right 3.882388e-01	k: 379528	n:980000
KS ci ratio: 2.905426e-01	ci left: 1.587682e-04	ci right 2.136453e-04	k: 181	n:980000
FAM5B   980000 perm   555 sec   (1766 perm/sec)   p_kst 1.846939e-04   p_cons 3.872735e-01   p_joint 5.295918e-04

Joint ci ratio: 1.702282e-01	ci left: 4.897837e-04	ci right 5.818663e-04	k: 529	n:990000
Cons ci ratio: 4.956024e-03	ci left: 3.862686e-01	ci right 3.881887e-01	k: 383356	n:990000
KS ci ratio: 2.889592e-01	ci left: 1.590379e-04	ci right 2.136539e-04	k: 183	n:990000
FAM5B   990000 perm   564 sec   (1756 perm/sec)   p_kst 1.848485e-04   p_cons 3.872283e-01   p_joint 5.343434e-04

Joint ci ratio: 1.680228e-01	ci left: 4.982935e-04	ci right 5.906394e-04	k: 543	n:1000000
Cons ci ratio: 4.930936e-03	ci left: 3.862971e-01	ci right 3.882076e-01	k: 387252	n:1000000
KS ci ratio: 2.851110e-01	ci left: 1.620877e-04	ci right 2.168762e-04	k: 188	n:1000000
FAM5B   1000000 perm   573 sec   (1745 perm/sec)   p_kst 1.880000e-04   p_cons 3.872520e-01   p_joint 5.430000e-04

Joint ci ratio: 1.672560e-01	ci left: 4.981027e-04	ci right 5.899495e-04	k: 548	n:1010000
Cons ci ratio: 4.906163e-03	ci left: 3.863310e-01	ci right 3.882320e-01	k: 391154	n:1010000
KS ci ratio: 2.828746e-01	ci left: 1.632416e-04	ci right 2.179102e-04	k: 191	n:1010000
FAM5B   1010000 perm   582 sec   (1734 perm/sec)   p_kst 1.891089e-04   p_cons 3.872812e-01   p_joint 5.425743e-04

Joint ci ratio: 1.695905e-01	ci left: 4.791329e-04	ci right 5.688410e-04	k: 533	n:1020000
Cons ci ratio: 4.881003e-03	ci left: 3.864378e-01	ci right 3.883295e-01	k: 395131	n:1020000
KS ci ratio: 2.821409e-01	ci left: 1.625521e-04	ci right 2.168235e-04	k: 192	n:1020000
FAM5B   1020000 perm   592 sec   (1724 perm/sec)   p_kst 1.882353e-04   p_cons 3.873833e-01   p_joint 5.225490e-04

Joint ci ratio: 1.691163e-01	ci left: 4.772703e-04	ci right 5.663543e-04	k: 536	n:1030000
Cons ci ratio: 4.856445e-03	ci left: 3.865211e-01	ci right 3.884038e-01	k: 399086	n:1030000
KS ci ratio: 2.806903e-01	ci left: 1.627787e-04	ci right 2.167968e-04	k: 194	n:1030000
FAM5B   1030000 perm   601 sec   (1714 perm/sec)   p_kst 1.883495e-04   p_cons 3.874621e-01   p_joint 5.203883e-04

Joint ci ratio: 1.686461e-01	ci left: 4.754438e-04	ci right 5.639151e-04	k: 539	n:1040000
Cons ci ratio: 4.832782e-03	ci left: 3.865510e-01	ci right 3.884246e-01	k: 402987	n:1040000
KS ci ratio: 2.799735e-01	ci left: 1.621075e-04	ci right 2.157412e-04	k: 195	n:1040000
FAM5B   1040000 perm   611 sec   (1703 perm/sec)   p_kst 1.875000e-04   p_cons 3.874875e-01   p_joint 5.182692e-04

Joint ci ratio: 1.677168e-01	ci left: 4.763895e-04	ci right 5.644990e-04	k: 545	n:1050000
Cons ci ratio: 4.809635e-03	ci left: 3.865632e-01	ci right 3.884279e-01	k: 406870	n:1050000
KS ci ratio: 2.792621e-01	ci left: 1.614492e-04	ci right 2.147055e-04	k: 196	n:1050000
FAM5B   1050000 perm   620 sec   (1693 perm/sec)   p_kst 1.866667e-04   p_cons 3.874952e-01   p_joint 5.190476e-04

Joint ci ratio: 1.666518e-01	ci left: 4.782228e-04	ci right 5.660533e-04	k: 552	n:1060000
Cons ci ratio: 4.786913e-03	ci left: 3.865658e-01	ci right 3.884216e-01	k: 410743	n:1060000
KS ci ratio: 2.778552e-01	ci left: 1.616811e-04	ci right 2.146983e-04	k: 198	n:1060000
FAM5B   1060000 perm   630 sec   (1683 perm/sec)   p_kst 1.867925e-04   p_cons 3.874934e-01   p_joint 5.207547e-04

Joint ci ratio: 1.684913e-01	ci left: 4.630085e-04	ci right 5.490787e-04	k: 540	n:1070000
Cons ci ratio: 4.764679e-03	ci left: 3.865515e-01	ci right 3.883986e-01	k: 414598	n:1070000
KS ci ratio: 2.757841e-01	ci left: 1.627792e-04	ci right 2.156896e-04	k: 201	n:1070000
FAM5B   1070000 perm   640 sec   (1673 perm/sec)   p_kst 1.878505e-04   p_cons 3.874748e-01   p_joint 5.046729e-04

Joint ci ratio: 1.677180e-01	ci left: 4.631562e-04	ci right 5.488188e-04	k: 545	n:1080000
Cons ci ratio: 4.742918e-03	ci left: 3.865209e-01	ci right 3.883594e-01	k: 418435	n:1080000
KS ci ratio: 2.744288e-01	ci left: 1.629961e-04	ci right 2.156717e-04	k: 203	n:1080000
FAM5B   1080000 perm   649 sec   (1663 perm/sec)   p_kst 1.879630e-04   p_cons 3.874398e-01   p_joint 5.046296e-04

Joint ci ratio: 1.672593e-01	ci left: 4.615440e-04	ci right 5.466514e-04	k: 548	n:1090000
Cons ci ratio: 4.720933e-03	ci left: 3.865431e-01	ci right 3.883731e-01	k: 422329	n:1090000
KS ci ratio: 2.744291e-01	ci left: 1.615007e-04	ci right 2.136931e-04	k: 203	n:1090000
FAM5B   1090000 perm   659 sec   (1653 perm/sec)   p_kst 1.862385e-04   p_cons 3.874578e-01   p_joint 5.027523e-04

Joint ci ratio: 1.668043e-01	ci left: 4.599614e-04	ci right 5.445231e-04	k: 551	n:1100000
Cons ci ratio: 4.699791e-03	ci left: 3.865104e-01	ci right 3.883320e-01	k: 426163	n:1100000
KS ci ratio: 2.737590e-01	ci left: 1.608791e-04	ci right 2.127219e-04	k: 204	n:1100000
FAM5B   1100000 perm   669 sec   (1644 perm/sec)   p_kst 1.854545e-04   p_cons 3.874209e-01   p_joint 5.009091e-04

Joint ci ratio: 1.659050e-01	ci left: 4.609979e-04	ci right 5.452477e-04	k: 557	n:1110000
Cons ci ratio: 4.677864e-03	ci left: 3.865863e-01	ci right 3.883998e-01	k: 430117	n:1110000
KS ci ratio: 2.711264e-01	ci left: 1.627873e-04	ci right 2.146546e-04	k: 208	n:1110000
FAM5B   1110000 perm   679 sec   (1635 perm/sec)   p_kst 1.873874e-04   p_cons 3.874928e-01   p_joint 5.018018e-04

Joint ci ratio: 1.656087e-01	ci left: 4.585935e-04	ci right 5.422392e-04	k: 559	n:1120000
Cons ci ratio: 4.657398e-03	ci left: 3.865432e-01	ci right 3.883485e-01	k: 433939	n:1120000
KS ci ratio: 2.704802e-01	ci left: 1.621661e-04	ci right 2.136913e-04	k: 209	n:1120000
FAM5B   1120000 perm   689 sec   (1626 perm/sec)   p_kst 1.866071e-04   p_cons 3.874455e-01   p_joint 4.991071e-04

Joint ci ratio: 1.674134e-01	ci left: 4.443579e-04	ci right 5.263794e-04	k: 547	n:1130000
Cons ci ratio: 4.636947e-03	ci left: 3.865264e-01	ci right 3.883237e-01	k: 437790	n:1130000
KS ci ratio: 2.692013e-01	ci left: 1.623811e-04	ci right 2.136896e-04	k: 211	n:1130000
FAM5B   1130000 perm   699 sec   (1616 perm/sec)   p_kst 1.867257e-04   p_cons 3.874248e-01   p_joint 4.840708e-04

Joint ci ratio: 1.671090e-01	ci left: 4.421409e-04	ci right 5.235898e-04	k: 549	n:1140000
Cons ci ratio: 4.616063e-03	ci left: 3.865819e-01	ci right 3.883713e-01	k: 441723	n:1140000
KS ci ratio: 2.666968e-01	ci left: 1.642299e-04	ci right 2.155590e-04	k: 215	n:1140000
FAM5B   1140000 perm   709 sec   (1608 perm/sec)   p_kst 1.885965e-04   p_cons 3.874763e-01   p_joint 4.815789e-04

Joint ci ratio: 1.669575e-01	ci left: 4.391294e-04	ci right 5.199428e-04	k: 550	n:1150000
Cons ci ratio: 4.596478e-03	ci left: 3.865312e-01	ci right 3.883128e-01	k: 445535	n:1150000
KS ci ratio: 2.642610e-01	ci left: 1.660486e-04	ci right 2.173938e-04	k: 219	n:1150000
FAM5B   1150000 perm   719 sec   (1599 perm/sec)   p_kst 1.904348e-04   p_cons 3.874217e-01   p_joint 4.782609e-04

Joint ci ratio: 1.666555e-01	ci left: 4.369959e-04	ci right 5.172567e-04	k: 552	n:1160000
Cons ci ratio: 4.576808e-03	ci left: 3.865159e-01	ci right 3.882898e-01	k: 449387	n:1160000
KS ci ratio: 2.630679e-01	ci left: 1.662273e-04	ci right 2.173575e-04	k: 221	n:1160000
FAM5B   1160000 perm   729 sec   (1590 perm/sec)   p_kst 1.905172e-04   p_cons 3.874026e-01   p_joint 4.758621e-04

Joint ci ratio: 1.663552e-01	ci left: 4.348990e-04	ci right 5.146163e-04	k: 554	n:1170000
Cons ci ratio: 4.557314e-03	ci left: 3.865086e-01	ci right 3.882749e-01	k: 453248	n:1170000
KS ci ratio: 2.624775e-01	ci left: 1.656050e-04	ci right 2.164107e-04	k: 222	n:1170000
FAM5B   1170000 perm   740 sec   (1581 perm/sec)   p_kst 1.897436e-04   p_cons 3.873915e-01   p_joint 4.735043e-04

Joint ci ratio: 1.665057e-01	ci left: 4.304012e-04	ci right 5.093725e-04	k: 553	n:1180000
Cons ci ratio: 4.537767e-03	ci left: 3.865327e-01	ci right 3.882915e-01	k: 457146	n:1180000
KS ci ratio: 2.618910e-01	ci left: 1.649933e-04	ci right 2.154797e-04	k: 223	n:1180000
FAM5B   1180000 perm   750 sec   (1573 perm/sec)   p_kst 1.889831e-04   p_cons 3.874119e-01   p_joint 4.686441e-04

Joint ci ratio: 1.663559e-01	ci left: 4.275897e-04	ci right 5.059674e-04	k: 554	n:1190000
Cons ci ratio: 4.518637e-03	ci left: 3.865389e-01	ci right 3.882903e-01	k: 461023	n:1190000
KS ci ratio: 2.613085e-01	ci left: 1.643920e-04	ci right 2.145643e-04	k: 224	n:1190000
FAM5B   1190000 perm   761 sec   (1564 perm/sec)   p_kst 1.882353e-04   p_cons 3.874143e-01   p_joint 4.655462e-04

Joint ci ratio: 1.656115e-01	ci left: 4.280200e-04	ci right 5.060906e-04	k: 559	n:1200000
Cons ci ratio: 4.499724e-03	ci left: 3.865474e-01	ci right 3.882915e-01	k: 464903	n:1200000
KS ci ratio: 2.607299e-01	ci left: 1.638009e-04	ci right 2.136640e-04	k: 225	n:1200000
FAM5B   1200000 perm   771 sec   (1556 perm/sec)   p_kst 1.875000e-04   p_cons 3.874192e-01   p_joint 4.658333e-04

Joint ci ratio: 1.651698e-01	ci left: 4.268594e-04	ci right 5.044900e-04	k: 562	n:1210000
Cons ci ratio: 4.481163e-03	ci left: 3.865434e-01	ci right 3.882803e-01	k: 468768	n:1210000
KS ci ratio: 2.601550e-01	ci left: 1.632197e-04	ci right 2.127785e-04	k: 226	n:1210000
FAM5B   1210000 perm   782 sec   (1548 perm/sec)   p_kst 1.867769e-04   p_cons 3.874116e-01   p_joint 4.644628e-04

Joint ci ratio: 1.648774e-01	ci left: 4.249321e-04	ci right 5.020618e-04	k: 564	n:1220000
Cons ci ratio: 4.462376e-03	ci left: 3.865879e-01	ci right 3.883176e-01	k: 472692	n:1220000
KS ci ratio: 2.595840e-01	ci left: 1.626481e-04	ci right 2.119073e-04	k: 227	n:1220000
FAM5B   1220000 perm   793 sec   (1539 perm/sec)   p_kst 1.860656e-04   p_cons 3.874525e-01   p_joint 4.622951e-04

Joint ci ratio: 1.634370e-01	ci left: 4.292736e-04	ci right 5.064437e-04	k: 574	n:1230000
Cons ci ratio: 4.444234e-03	ci left: 3.865877e-01	ci right 3.883104e-01	k: 476562	n:1230000
KS ci ratio: 2.573362e-01	ci left: 1.643671e-04	ci right 2.136467e-04	k: 231	n:1230000
FAM5B   1230000 perm   803 sec   (1531 perm/sec)   p_kst 1.878049e-04   p_cons 3.874488e-01   p_joint 4.666667e-04

Joint ci ratio: 1.663574e-01	ci left: 4.103478e-04	ci right 4.855659e-04	k: 554	n:1240000
Cons ci ratio: 4.426010e-03	ci left: 3.866198e-01	ci right 3.883356e-01	k: 480472	n:1240000
KS ci ratio: 2.562341e-01	ci left: 1.645507e-04	ci right 2.136402e-04	k: 233	n:1240000
FAM5B   1240000 perm   814 sec   (1523 perm/sec)   p_kst 1.879032e-04   p_cons 3.874774e-01   p_joint 4.467742e-04

Joint ci ratio: 1.662080e-01	ci left: 4.078317e-04	ci right 4.825147e-04	k: 555	n:1250000
Cons ci ratio: 4.408239e-03	ci left: 3.866266e-01	ci right 3.883355e-01	k: 484351	n:1250000
KS ci ratio: 2.562343e-01	ci left: 1.632343e-04	ci right 2.119311e-04	k: 233	n:1250000
FAM5B   1250000 perm   825 sec   (1514 perm/sec)   p_kst 1.864000e-04   p_cons 3.874808e-01   p_joint 4.440000e-04

Joint ci ratio: 1.654656e-01	ci left: 4.083985e-04	ci right 4.828180e-04	k: 560	n:1260000
Cons ci ratio: 4.390512e-03	ci left: 3.866516e-01	ci right 3.883537e-01	k: 488253	n:1260000
KS ci ratio: 2.540718e-01	ci left: 1.649104e-04	ci right 2.136263e-04	k: 237	n:1260000
FAM5B   1260000 perm   836 sec   (1507 perm/sec)   p_kst 1.880952e-04   p_cons 3.875024e-01   p_joint 4.444444e-04

Joint ci ratio: 1.680325e-01	ci left: 3.923553e-04	ci right 4.650728e-04	k: 543	n:1270000
Cons ci ratio: 4.373127e-03	ci left: 3.866620e-01	ci right 3.883574e-01	k: 492137	n:1270000
KS ci ratio: 2.535398e-01	ci left: 1.643492e-04	ci right 2.127816e-04	k: 238	n:1270000
FAM5B   1270000 perm   847 sec   (1499 perm/sec)   p_kst 1.874016e-04   p_cons 3.875094e-01   p_joint 4.275591e-04

Joint ci ratio: 1.674182e-01	ci left: 3.922838e-04	ci right 4.646954e-04	k: 547	n:1280000
Cons ci ratio: 4.357209e-03	ci left: 3.865348e-01	ci right 3.882235e-01	k: 495845	n:1280000
KS ci ratio: 2.524855e-01	ci left: 1.645286e-04	ci right 2.127806e-04	k: 240	n:1280000
FAM5B   1280000 perm   858 sec   (1492 perm/sec)   p_kst 1.875000e-04   p_cons 3.873789e-01   p_joint 4.273437e-04

Joint ci ratio: 1.672659e-01	ci left: 3.899855e-04	ci right 4.619008e-04	k: 548	n:1290000
Cons ci ratio: 4.340506e-03	ci left: 3.865143e-01	ci right 3.881963e-01	k: 499688	n:1290000
KS ci ratio: 2.524857e-01	ci left: 1.632532e-04	ci right 2.111312e-04	k: 240	n:1290000
FAM5B   1290000 perm   869 sec   (1484 perm/sec)   p_kst 1.860465e-04   p_cons 3.873550e-01   p_joint 4.248062e-04

Joint ci ratio: 1.696001e-01	ci left: 3.759333e-04	ci right 4.463237e-04	k: 533	n:1300000
Cons ci ratio: 4.324008e-03	ci left: 3.864925e-01	ci right 3.881680e-01	k: 503529	n:1300000
KS ci ratio: 2.519636e-01	ci left: 1.627180e-04	ci right 2.103248e-04	k: 241	n:1300000
FAM5B   1300000 perm   881 sec   (1476 perm/sec)   p_kst 1.853846e-04   p_cons 3.873300e-01   p_joint 4.100000e-04

Joint ci ratio: 1.686551e-01	ci left: 3.774499e-04	ci right 4.476904e-04	k: 539	n:1310000
Cons ci ratio: 4.307336e-03	ci left: 3.865107e-01	ci right 3.881799e-01	k: 507422	n:1310000
KS ci ratio: 2.519638e-01	ci left: 1.614759e-04	ci right 2.087193e-04	k: 241	n:1310000
FAM5B   1310000 perm   892 sec   (1469 perm/sec)   p_kst 1.839695e-04   p_cons 3.873450e-01   p_joint 4.114504e-04

Joint ci ratio: 1.681886e-01	ci left: 3.767674e-04	ci right 4.466673e-04	k: 542	n:1320000
Cons ci ratio: 4.291102e-03	ci left: 3.865014e-01	ci right 3.881642e-01	k: 511279	n:1320000
KS ci ratio: 2.514449e-01	ci left: 1.609624e-04	ci right 2.079434e-04	k: 242	n:1320000
FAM5B   1320000 perm   903 sec   (1461 perm/sec)   p_kst 1.833333e-04   p_cons 3.873326e-01   p_joint 4.106061e-04

Joint ci ratio: 1.675726e-01	ci left: 3.768157e-04	ci right 4.464426e-04	k: 546	n:1330000
Cons ci ratio: 4.274624e-03	ci left: 3.865396e-01	ci right 3.881962e-01	k: 515199	n:1330000
KS ci ratio: 2.509292e-01	ci left: 1.604567e-04	ci right 2.071790e-04	k: 243	n:1330000
FAM5B   1330000 perm   915 sec   (1454 perm/sec)   p_kst 1.827068e-04   p_cons 3.873677e-01   p_joint 4.105263e-04

Joint ci ratio: 1.396031e-01	ci left: 5.470028e-04	ci right 6.298073e-04	k: 787	n:1340000
Cons ci ratio: 4.258494e-03	ci left: 3.865594e-01	ci right 3.882098e-01	k: 519095	n:1340000
KS ci ratio: 2.376607e-01	ci left: 1.788768e-04	ci right 2.278038e-04	k: 271	n:1340000
FAM5B   1340000 perm   926 sec   (1447 perm/sec)   p_kst 2.022388e-04   p_cons 3.873843e-01   p_joint 5.873134e-04

Joint ci ratio: 1.394265e-01	ci left: 5.443807e-04	ci right 6.266753e-04	k: 789	n:1350000
Cons ci ratio: 4.242957e-03	ci left: 3.865329e-01	ci right 3.881772e-01	k: 522929	n:1350000
KS ci ratio: 2.376609e-01	ci left: 1.775518e-04	ci right 2.261164e-04	k: 271	n:1350000
FAM5B   1350000 perm   937 sec   (1440 perm/sec)   p_kst 2.007407e-04   p_cons 3.873548e-01   p_joint 5.844444e-04

Joint ci ratio: 1.389874e-01	ci left: 5.439263e-04	ci right 6.258718e-04	k: 794	n:1360000
Cons ci ratio: 4.226848e-03	ci left: 3.865900e-01	ci right 3.882282e-01	k: 526876	n:1360000
KS ci ratio: 2.376611e-01	ci left: 1.762463e-04	ci right 2.244538e-04	k: 271	n:1360000
FAM5B   1360000 perm   949 sec   (1433 perm/sec)   p_kst 1.992647e-04   p_cons 3.874088e-01   p_joint 5.838235e-04

Joint ci ratio: 1.384658e-01	ci left: 5.441836e-04	ci right 6.258349e-04	k: 800	n:1370000
Cons ci ratio: 4.211387e-03	ci left: 3.865936e-01	ci right 3.882258e-01	k: 530751	n:1370000
KS ci ratio: 2.363611e-01	ci left: 1.770196e-04	ci right 2.251350e-04	k: 274	n:1370000
FAM5B   1370000 perm   961 sec   (1426 perm/sec)   p_kst 2.000000e-04   p_cons 3.874095e-01   p_joint 5.839416e-04

Joint ci ratio: 1.377794e-01	ci left: 5.458371e-04	ci right 6.272971e-04	k: 808	n:1380000
Cons ci ratio: 4.196172e-03	ci left: 3.865885e-01	ci right 3.882148e-01	k: 534614	n:1380000
KS ci ratio: 2.355062e-01	ci left: 1.771004e-04	ci right 2.250384e-04	k: 276	n:1380000
FAM5B   1380000 perm   973 sec   (1419 perm/sec)   p_kst 2.000000e-04   p_cons 3.874014e-01   p_joint 5.855072e-04

Joint ci ratio: 1.371871e-01	ci left: 5.467730e-04	ci right 6.279933e-04	k: 815	n:1390000
Cons ci ratio: 4.181925e-03	ci left: 3.864922e-01	ci right 3.881126e-01	k: 538350	n:1390000
KS ci ratio: 2.342411e-01	ci left: 1.778576e-04	ci right 2.257045e-04	k: 279	n:1390000
FAM5B   1390000 perm   984 sec   (1412 perm/sec)   p_kst 2.007194e-04   p_cons 3.873022e-01   p_joint 5.863309e-04

Joint ci ratio: 1.370195e-01	ci left: 5.442470e-04	ci right 6.249852e-04	k: 817	n:1400000
Cons ci ratio: 4.167013e-03	ci left: 3.864894e-01	ci right 3.881039e-01	k: 542215	n:1400000
KS ci ratio: 2.338240e-01	ci left: 1.772596e-04	ci right 2.248484e-04	k: 280	n:1400000
FAM5B   1400000 perm   997 sec   (1405 perm/sec)   p_kst 2.000000e-04   p_cons 3.872964e-01   p_joint 5.835714e-04

Joint ci ratio: 1.366027e-01	ci left: 5.438118e-04	ci right 6.242201e-04	k: 822	n:1410000
Cons ci ratio: 4.151919e-03	ci left: 3.865256e-01	ci right 3.881344e-01	k: 546135	n:1410000
KS ci ratio: 2.329963e-01	ci left: 1.773379e-04	ci right 2.247549e-04	k: 282	n:1410000
FAM5B   1410000 perm   1009 sec   (1398 perm/sec)   p_kst 2.000000e-04   p_cons 3.873298e-01   p_joint 5.829787e-04

Joint ci ratio: 1.361074e-01	ci left: 5.440633e-04	ci right 6.241936e-04	k: 828	n:1420000
Cons ci ratio: 4.137564e-03	ci left: 3.864951e-01	ci right 3.880983e-01	k: 549961	n:1420000
KS ci ratio: 2.325859e-01	ci left: 1.767522e-04	ci right 2.239174e-04	k: 283	n:1420000
FAM5B   1420000 perm   1021 sec   (1391 perm/sec)   p_kst 1.992958e-04   p_cons 3.872965e-01   p_joint 5.830986e-04

Joint ci ratio: 1.354553e-01	ci left: 5.456631e-04	ci right 6.256129e-04	k: 836	n:1430000
Cons ci ratio: 4.122749e-03	ci left: 3.865350e-01	ci right 3.881326e-01	k: 553887	n:1430000
KS ci ratio: 2.313670e-01	ci left: 1.774922e-04	ci right 2.245711e-04	k: 286	n:1430000
FAM5B   1430000 perm   1033 sec   (1384 perm/sec)   p_kst 2.000000e-04   p_cons 3.873336e-01   p_joint 5.846154e-04

Joint ci ratio: 1.379518e-01	ci left: 5.217524e-04	ci right 5.997235e-04	k: 806	n:1440000
Cons ci ratio: 4.108315e-03	ci left: 3.865487e-01	ci right 3.881407e-01	k: 557776	n:1440000
KS ci ratio: 2.301671e-01	ci left: 1.782225e-04	ci right 2.252152e-04	k: 289	n:1440000
FAM5B   1440000 perm   1046 sec   (1377 perm/sec)   p_kst 2.006944e-04   p_cons 3.873444e-01   p_joint 5.597222e-04

Joint ci ratio: 1.376962e-01	ci left: 5.201517e-04	ci right 5.977278e-04	k: 809	n:1450000
Cons ci ratio: 4.093901e-03	ci left: 3.865773e-01	ci right 3.881638e-01	k: 561687	n:1450000
KS ci ratio: 2.293775e-01	ci left: 1.782933e-04	ci right 2.251205e-04	k: 291	n:1450000
FAM5B   1450000 perm   1058 sec   (1370 perm/sec)   p_kst 2.006897e-04   p_cons 3.873703e-01   p_joint 5.579310e-04

Joint ci ratio: 1.380379e-01	ci left: 5.139437e-04	ci right 5.907998e-04	k: 805	n:1460000
Cons ci ratio: 4.079878e-03	ci left: 3.865775e-01	ci right 3.881586e-01	k: 565557	n:1460000
KS ci ratio: 2.289858e-01	ci left: 1.777177e-04	ci right 2.243028e-04	k: 292	n:1460000
FAM5B   1460000 perm   1071 sec   (1364 perm/sec)   p_kst 2.000000e-04   p_cons 3.873678e-01   p_joint 5.513699e-04

Joint ci ratio: 1.394298e-01	ci left: 4.999406e-04	ci right 5.755191e-04	k: 789	n:1470000
Cons ci ratio: 4.065579e-03	ci left: 3.866266e-01	ci right 3.882024e-01	k: 569499	n:1470000
KS ci ratio: 2.278224e-01	ci left: 1.784328e-04	ci right 2.249343e-04	k: 295	n:1470000
FAM5B   1470000 perm   1083 sec   (1357 perm/sec)   p_kst 2.006803e-04   p_cons 3.874143e-01   p_joint 5.367347e-04

Joint ci ratio: 1.392538e-01	ci left: 4.978669e-04	ci right 5.730290e-04	k: 791	n:1480000
Cons ci ratio: 4.051556e-03	ci left: 3.866603e-01	ci right 3.882307e-01	k: 573419	n:1480000
KS ci ratio: 2.274386e-01	ci left: 1.778644e-04	ci right 2.241286e-04	k: 296	n:1480000
FAM5B   1480000 perm   1096 sec   (1350 perm/sec)   p_kst 2.000000e-04   p_cons 3.874453e-01   p_joint 5.344595e-04

Joint ci ratio: 1.387293e-01	ci left: 4.984123e-04	ci right 5.733499e-04	k: 797	n:1490000
Cons ci ratio: 4.037838e-03	ci left: 3.866747e-01	ci right 3.882398e-01	k: 577311	n:1490000
KS ci ratio: 2.270567e-01	ci left: 1.773036e-04	ci right 2.233337e-04	k: 297	n:1490000
FAM5B   1490000 perm   1109 sec   (1344 perm/sec)   p_kst 1.993289e-04   p_cons 3.874570e-01   p_joint 5.348993e-04

Joint ci ratio: 1.385559e-01	ci left: 4.963766e-04	ci right 5.709072e-04	k: 799	n:1500000
Cons ci ratio: 4.024675e-03	ci left: 3.866396e-01	ci right 3.881995e-01	k: 581129	n:1500000
KS ci ratio: 2.270569e-01	ci left: 1.761215e-04	ci right 2.218448e-04	k: 297	n:1500000
FAM5B   1500000 perm   1121 sec   (1338 perm/sec)   p_kst 1.980000e-04   p_cons 3.874193e-01   p_joint 5.326667e-04

Joint ci ratio: 1.381250e-01	ci left: 4.962860e-04	ci right 5.705521e-04	k: 804	n:1510000
Cons ci ratio: 4.011227e-03	ci left: 3.866540e-01	ci right 3.882087e-01	k: 585021	n:1510000
KS ci ratio: 2.255480e-01	ci left: 1.774540e-04	ci right 2.231745e-04	k: 301	n:1510000
FAM5B   1510000 perm   1134 sec   (1331 perm/sec)   p_kst 1.993377e-04   p_cons 3.874311e-01   p_joint 5.324503e-04

Joint ci ratio: 1.376130e-01	ci left: 4.968322e-04	ci right 5.708819e-04	k: 810	n:1520000
Cons ci ratio: 3.997935e-03	ci left: 3.866656e-01	ci right 3.882151e-01	k: 588909	n:1520000
KS ci ratio: 2.244360e-01	ci left: 1.781490e-04	ci right 2.237910e-04	k: 304	n:1520000
FAM5B   1520000 perm   1147 sec   (1325 perm/sec)   p_kst 2.000000e-04   p_cons 3.874401e-01   p_joint 5.328947e-04

Joint ci ratio: 1.373593e-01	ci left: 4.954782e-04	ci right 5.691789e-04	k: 813	n:1530000
Cons ci ratio: 3.984653e-03	ci left: 3.866913e-01	ci right 3.882359e-01	k: 592819	n:1530000
KS ci ratio: 2.237037e-01	ci left: 1.782185e-04	ci right 2.237088e-04	k: 306	n:1530000
FAM5B   1530000 perm   1160 sec   (1319 perm/sec)   p_kst 2.000000e-04   p_cons 3.874634e-01   p_joint 5.313725e-04

Joint ci ratio: 1.371070e-01	ci left: 4.941420e-04	ci right 5.674978e-04	k: 816	n:1540000
Cons ci ratio: 3.971991e-03	ci left: 3.866584e-01	ci right 3.881979e-01	k: 596639	n:1540000
KS ci ratio: 2.233403e-01	ci left: 1.776742e-04	ci right 2.229418e-04	k: 307	n:1540000
FAM5B   1540000 perm   1173 sec   (1313 perm/sec)   p_kst 1.993506e-04   p_cons 3.874279e-01   p_joint 5.298701e-04

Joint ci ratio: 1.377838e-01	ci left: 4.859700e-04	ci right 5.584981e-04	k: 808	n:1550000
Cons ci ratio: 3.958976e-03	ci left: 3.866826e-01	ci right 3.882171e-01	k: 600547	n:1550000
KS ci ratio: 2.233405e-01	ci left: 1.765279e-04	ci right 2.215034e-04	k: 307	n:1550000
FAM5B   1550000 perm   1186 sec   (1307 perm/sec)   p_kst 1.980645e-04   p_cons 3.874497e-01   p_joint 5.212903e-04

Joint ci ratio: 1.379548e-01	ci left: 4.816169e-04	ci right 5.535918e-04	k: 806	n:1560000
Cons ci ratio: 3.946600e-03	ci left: 3.866450e-01	ci right 3.881746e-01	k: 604359	n:1560000
KS ci ratio: 2.233406e-01	ci left: 1.753963e-04	ci right 2.200836e-04	k: 307	n:1560000
FAM5B   1560000 perm   1199 sec   (1301 perm/sec)   p_kst 1.967949e-04   p_cons 3.874096e-01   p_joint 5.166667e-04

Joint ci ratio: 1.375294e-01	ci left: 4.816243e-04	ci right 5.533601e-04	k: 811	n:1570000
Cons ci ratio: 3.933695e-03	ci left: 3.866856e-01	ci right 3.882103e-01	k: 608293	n:1570000
KS ci ratio: 2.215493e-01	ci left: 1.772864e-04	ci right 2.220436e-04	k: 312	n:1570000
FAM5B   1570000 perm   1212 sec   (1295 perm/sec)   p_kst 1.987261e-04   p_cons 3.874478e-01   p_joint 5.165605e-04

Joint ci ratio: 1.369403e-01	ci left: 4.828543e-04	ci right 5.544402e-04	k: 818	n:1580000
Cons ci ratio: 3.921156e-03	ci left: 3.866966e-01	ci right 3.882165e-01	k: 612181	n:1580000
KS ci ratio: 2.204951e-01	ci left: 1.779580e-04	ci right 2.226419e-04	k: 315	n:1580000
FAM5B   1580000 perm   1226 sec   (1289 perm/sec)   p_kst 1.993671e-04   p_cons 3.874563e-01   p_joint 5.177215e-04

Joint ci ratio: 1.367736e-01	ci left: 4.810322e-04	ci right 5.522541e-04	k: 820	n:1590000
Cons ci ratio: 3.908819e-03	ci left: 3.866974e-01	ci right 3.882125e-01	k: 616053	n:1590000
KS ci ratio: 2.198006e-01	ci left: 1.780273e-04	ci right 2.225688e-04	k: 317	n:1590000
FAM5B   1590000 perm   1239 sec   (1283 perm/sec)   p_kst 1.993711e-04   p_cons 3.874547e-01   p_joint 5.157233e-04

Joint ci ratio: 1.361119e-01	ci left: 4.828552e-04	ci right 5.539731e-04	k: 828	n:1600000
Cons ci ratio: 3.896362e-03	ci left: 3.867269e-01	ci right 3.882373e-01	k: 619971	n:1600000
KS ci ratio: 2.187710e-01	ci left: 1.786866e-04	ci right 2.231555e-04	k: 320	n:1600000
FAM5B   1600000 perm   1253 sec   (1277 perm/sec)   p_kst 2.000000e-04   p_cons 3.874819e-01   p_joint 5.175000e-04

Joint ci ratio: 1.356220e-01	ci left: 4.834561e-04	ci right 5.543855e-04	k: 834	n:1610000
Cons ci ratio: 3.884460e-03	ci left: 3.867027e-01	ci right 3.882083e-01	k: 623803	n:1610000
KS ci ratio: 2.180927e-01	ci left: 1.787511e-04	ci right 2.230796e-04	k: 322	n:1610000
FAM5B   1610000 perm   1266 sec   (1272 perm/sec)   p_kst 2.000000e-04   p_cons 3.874553e-01   p_joint 5.180124e-04

Joint ci ratio: 1.348968e-01	ci left: 4.858394e-04	ci right 5.567068e-04	k: 843	n:1620000
Cons ci ratio: 3.872174e-03	ci left: 3.867392e-01	ci right 3.882402e-01	k: 627733	n:1620000
KS ci ratio: 2.177559e-01	ci left: 1.782312e-04	ci right 2.223535e-04	k: 323	n:1620000
FAM5B   1620000 perm   1280 sec   (1266 perm/sec)   p_kst 1.993827e-04   p_cons 3.874895e-01   p_joint 5.203704e-04

Joint ci ratio: 1.349770e-01	ci left: 4.822660e-04	ci right 5.526573e-04	k: 842	n:1630000
Cons ci ratio: 3.860442e-03	ci left: 3.867213e-01	ci right 3.882177e-01	k: 631575	n:1630000
KS ci ratio: 2.167547e-01	ci left: 1.788781e-04	ci right 2.229298e-04	k: 326	n:1630000
FAM5B   1630000 perm   1293 sec   (1261 perm/sec)   p_kst 2.000000e-04   p_cons 3.874693e-01   p_joint 5.165644e-04

Joint ci ratio: 1.349772e-01	ci left: 4.793253e-04	ci right 5.492875e-04	k: 842	n:1640000
Cons ci ratio: 3.848890e-03	ci left: 3.866945e-01	ci right 3.881863e-01	k: 635402	n:1640000
KS ci ratio: 2.167548e-01	ci left: 1.777874e-04	ci right 2.215705e-04	k: 326	n:1640000
FAM5B   1640000 perm   1307 sec   (1255 perm/sec)   p_kst 1.987805e-04   p_cons 3.874402e-01   p_joint 5.134146e-04

Joint ci ratio: 1.343412e-01	ci left: 4.811054e-04	ci right 5.509702e-04	k: 850	n:1650000
Cons ci ratio: 3.836848e-03	ci left: 3.867414e-01	ci right 3.882287e-01	k: 639350	n:1650000
KS ci ratio: 2.151162e-01	ci left: 1.795764e-04	ci right 2.234215e-04	k: 331	n:1650000
FAM5B   1650000 perm   1320 sec   (1250 perm/sec)   p_kst 2.006061e-04   p_cons 3.874848e-01   p_joint 5.151515e-04

Joint ci ratio: 1.341837e-01	ci left: 4.793715e-04	ci right 5.488964e-04	k: 852	n:1660000
Cons ci ratio: 3.825346e-03	ci left: 3.867347e-01	ci right 3.882175e-01	k: 643210	n:1660000
KS ci ratio: 2.144712e-01	ci left: 1.796346e-04	ci right 2.233452e-04	k: 333	n:1660000
FAM5B   1660000 perm   1334 sec   (1244 perm/sec)   p_kst 2.006024e-04   p_cons 3.874759e-01   p_joint 5.132530e-04

Joint ci ratio: 1.343416e-01	ci left: 4.753436e-04	ci right 5.443718e-04	k: 850	n:1670000
Cons ci ratio: 3.813889e-03	ci left: 3.867353e-01	ci right 3.882136e-01	k: 647082	n:1670000
KS ci ratio: 2.141509e-01	ci left: 1.791256e-04	ci right 2.226387e-04	k: 334	n:1670000
FAM5B   1670000 perm   1348 sec   (1239 perm/sec)   p_kst 2.000000e-04   p_cons 3.874743e-01   p_joint 5.089820e-04

Joint ci ratio: 1.340270e-01	ci left: 4.748152e-04	ci right 5.435924e-04	k: 854	n:1680000
Cons ci ratio: 3.802000e-03	ci left: 3.868025e-01	ci right 3.882765e-01	k: 651066	n:1680000
KS ci ratio: 2.135145e-01	ci left: 1.791861e-04	ci right 2.225676e-04	k: 336	n:1680000
FAM5B   1680000 perm   1362 sec   (1233 perm/sec)   p_kst 2.000000e-04   p_cons 3.875393e-01   p_joint 5.083333e-04

Joint ci ratio: 1.337926e-01	ci left: 4.737213e-04	ci right 5.422105e-04	k: 857	n:1690000
Cons ci ratio: 3.790704e-03	ci left: 3.868086e-01	ci right 3.882782e-01	k: 654948	n:1690000
KS ci ratio: 2.128838e-01	ci left: 1.792461e-04	ci right 2.224971e-04	k: 338	n:1690000
FAM5B   1690000 perm   1377 sec   (1228 perm/sec)   p_kst 2.000000e-04   p_cons 3.875432e-01   p_joint 5.071006e-04

Joint ci ratio: 1.335594e-01	ci left: 4.726404e-04	ci right 5.408447e-04	k: 860	n:1700000
Cons ci ratio: 3.779831e-03	ci left: 3.867740e-01	ci right 3.882393e-01	k: 658761	n:1700000
KS ci ratio: 2.122585e-01	ci left: 1.793055e-04	ci right 2.224273e-04	k: 340	n:1700000
FAM5B   1700000 perm   1391 sec   (1222 perm/sec)   p_kst 2.000000e-04   p_cons 3.875065e-01   p_joint 5.058824e-04

Joint ci ratio: 1.333274e-01	ci left: 4.715722e-04	ci right 5.394948e-04	k: 863	n:1710000
Cons ci ratio: 3.768953e-03	ci left: 3.867522e-01	ci right 3.882131e-01	k: 662595	n:1710000
KS ci ratio: 2.119481e-01	ci left: 1.788107e-04	ci right 2.217424e-04	k: 341	n:1710000
FAM5B   1710000 perm   1405 sec   (1217 perm/sec)   p_kst 1.994152e-04   p_cons 3.874825e-01   p_joint 5.046784e-04

Joint ci ratio: 1.207070e-01	ci left: 5.757962e-04	ci right 6.503206e-04	k: 1053	n:1720000
Cons ci ratio: 3.757833e-03	ci left: 3.867730e-01	ci right 3.882297e-01	k: 666502	n:1720000
KS ci ratio: 2.107192e-01	ci left: 1.799736e-04	ci right 2.229017e-04	k: 345	n:1720000
FAM5B   1720000 perm   1419 sec   (1212 perm/sec)   p_kst 2.005814e-04   p_cons 3.875012e-01   p_joint 6.122093e-04

Joint ci ratio: 1.205357e-01	ci left: 5.741496e-04	ci right 6.483479e-04	k: 1056	n:1730000
Cons ci ratio: 3.746897e-03	ci left: 3.867826e-01	ci right 3.882351e-01	k: 670390	n:1730000
KS ci ratio: 2.104155e-01	ci left: 1.794808e-04	ci right 2.222217e-04	k: 346	n:1730000
FAM5B   1730000 perm   1433 sec   (1207 perm/sec)   p_kst 2.000000e-04   p_cons 3.875087e-01   p_joint 6.104046e-04

Joint ci ratio: 1.204789e-01	ci left: 5.714072e-04	ci right 6.452139e-04	k: 1057	n:1740000
Cons ci ratio: 3.736328e-03	ci left: 3.867576e-01	ci right 3.882059e-01	k: 674218	n:1740000
KS ci ratio: 2.101130e-01	ci left: 1.789938e-04	ci right 2.215495e-04	k: 347	n:1740000
FAM5B   1740000 perm   1447 sec   (1202 perm/sec)   p_kst 1.994253e-04   p_cons 3.874816e-01   p_joint 6.074713e-04

Joint ci ratio: 1.200259e-01	ci left: 5.725760e-04	ci right 6.462358e-04	k: 1065	n:1750000
Cons ci ratio: 3.725659e-03	ci left: 3.867570e-01	ci right 3.882011e-01	k: 678088	n:1750000
KS ci ratio: 2.095118e-01	ci left: 1.790538e-04	ci right 2.214863e-04	k: 349	n:1750000
FAM5B   1750000 perm   1462 sec   (1197 perm/sec)   p_kst 1.994286e-04   p_cons 3.874789e-01   p_joint 6.085714e-04

Joint ci ratio: 1.193004e-01	ci left: 5.764881e-04	ci right 6.501713e-04	k: 1078	n:1760000
Cons ci ratio: 3.715130e-03	ci left: 3.867500e-01	ci right 3.881901e-01	k: 681947	n:1760000
KS ci ratio: 2.077385e-01	ci left: 1.812674e-04	ci right 2.238148e-04	k: 355	n:1760000
FAM5B   1760000 perm   1476 sec   (1192 perm/sec)   p_kst 2.017045e-04   p_cons 3.874699e-01   p_joint 6.125000e-04

Joint ci ratio: 1.188059e-01	ci left: 5.781644e-04	ci right 6.517341e-04	k: 1087	n:1770000
Cons ci ratio: 3.704482e-03	ci left: 3.867698e-01	ci right 3.882057e-01	k: 685853	n:1770000
KS ci ratio: 2.065811e-01	ci left: 1.823860e-04	ci right 2.249272e-04	k: 359	n:1770000
FAM5B   1770000 perm   1491 sec   (1187 perm/sec)   p_kst 2.028249e-04   p_cons 3.874876e-01   p_joint 6.141243e-04

Joint ci ratio: 1.183714e-01	ci left: 5.792774e-04	ci right 6.527002e-04	k: 1095	n:1780000
Cons ci ratio: 3.694009e-03	ci left: 3.867786e-01	ci right 3.882105e-01	k: 689740	n:1780000
KS ci ratio: 2.051611e-01	ci left: 1.840256e-04	ci right 2.266172e-04	k: 364	n:1780000
FAM5B   1780000 perm   1506 sec   (1182 perm/sec)   p_kst 2.044944e-04   p_cons 3.874944e-01   p_joint 6.151685e-04

Joint ci ratio: 1.181561e-01	ci left: 5.782097e-04	ci right 6.513546e-04	k: 1099	n:1790000
Cons ci ratio: 3.683879e-03	ci left: 3.867544e-01	ci right 3.881823e-01	k: 693568	n:1790000
KS ci ratio: 2.046013e-01	ci left: 1.840575e-04	ci right 2.265257e-04	k: 366	n:1790000
FAM5B   1790000 perm   1521 sec   (1177 perm/sec)   p_kst 2.044693e-04   p_cons 3.874682e-01   p_joint 6.139665e-04

Joint ci ratio: 1.178885e-01	ci left: 5.776932e-04	ci right 6.505957e-04	k: 1104	n:1800000
Cons ci ratio: 3.673558e-03	ci left: 3.867660e-01	ci right 3.881899e-01	k: 697460	n:1800000
KS ci ratio: 2.040461e-01	ci left: 1.840892e-04	ci right 2.264351e-04	k: 368	n:1800000
FAM5B   1800000 perm   1536 sec   (1172 perm/sec)   p_kst 2.044444e-04   p_cons 3.874778e-01   p_joint 6.133333e-04

Joint ci ratio: 1.178887e-01	ci left: 5.745015e-04	ci right 6.470013e-04	k: 1104	n:1810000
Cons ci ratio: 3.663578e-03	ci left: 3.867443e-01	ci right 3.881643e-01	k: 701292	n:1810000
KS ci ratio: 2.040462e-01	ci left: 1.830721e-04	ci right 2.251841e-04	k: 368	n:1810000
FAM5B   1810000 perm   1550 sec   (1168 perm/sec)   p_kst 2.033149e-04   p_cons 3.874541e-01   p_joint 6.099448e-04

Joint ci ratio: 1.176760e-01	ci left: 5.734779e-04	ci right 6.457089e-04	k: 1108	n:1820000
Cons ci ratio: 3.653675e-03	ci left: 3.867235e-01	ci right 3.881395e-01	k: 705125	n:1820000
KS ci ratio: 2.034955e-01	ci left: 1.831091e-04	ci right 2.251017e-04	k: 370	n:1820000
FAM5B   1820000 perm   1565 sec   (1163 perm/sec)   p_kst 2.032967e-04   p_cons 3.874313e-01   p_joint 6.087912e-04

Joint ci ratio: 1.171489e-01	ci left: 5.756482e-04	ci right 6.478053e-04	k: 1118	n:1830000
Cons ci ratio: 3.643709e-03	ci left: 3.867214e-01	ci right 3.881336e-01	k: 708992	n:1830000
KS ci ratio: 2.021377e-01	ci left: 1.847020e-04	ci right 2.267425e-04	k: 375	n:1830000
FAM5B   1830000 perm   1580 sec   (1158 perm/sec)   p_kst 2.049180e-04   p_cons 3.874273e-01   p_joint 6.109290e-04

Joint ci ratio: 1.168361e-01	ci left: 5.756851e-04	ci right 6.476409e-04	k: 1124	n:1840000
Cons ci ratio: 3.633671e-03	ci left: 3.867395e-01	ci right 3.881478e-01	k: 712896	n:1840000
KS ci ratio: 2.013361e-01	ci left: 1.852463e-04	ci right 2.272228e-04	k: 378	n:1840000
FAM5B   1840000 perm   1595 sec   (1153 perm/sec)   p_kst 2.054348e-04   p_cons 3.874435e-01   p_joint 6.108696e-04

Joint ci ratio: 1.166290e-01	ci left: 5.746723e-04	ci right 6.463654e-04	k: 1128	n:1850000
Cons ci ratio: 3.623909e-03	ci left: 3.867320e-01	ci right 3.881365e-01	k: 716753	n:1850000
KS ci ratio: 2.010710e-01	ci left: 1.847582e-04	ci right 2.265623e-04	k: 379	n:1850000
FAM5B   1850000 perm   1611 sec   (1149 perm/sec)   p_kst 2.048649e-04   p_cons 3.874341e-01   p_joint 6.097297e-04

Joint ci ratio: 1.162179e-01	ci left: 5.757585e-04	ci right 6.473166e-04	k: 1136	n:1860000
Cons ci ratio: 3.614041e-03	ci left: 3.867487e-01	ci right 3.881495e-01	k: 720655	n:1860000
KS ci ratio: 2.005440e-01	ci left: 1.847861e-04	ci right 2.264735e-04	k: 381	n:1860000
FAM5B   1860000 perm   1626 sec   (1144 perm/sec)   p_kst 2.048387e-04   p_cons 3.874489e-01   p_joint 6.107527e-04

Joint ci ratio: 1.160650e-01	ci left: 5.742372e-04	ci right 6.455059e-04	k: 1139	n:1870000
Cons ci ratio: 3.604127e-03	ci left: 3.867819e-01	ci right 3.881789e-01	k: 724588	n:1870000
KS ci ratio: 2.000211e-01	ci left: 1.848138e-04	ci right 2.263855e-04	k: 383	n:1870000
FAM5B   1870000 perm   1641 sec   (1139 perm/sec)   p_kst 2.048128e-04   p_cons 3.874802e-01   p_joint 6.090909e-04

Joint ci ratio: 1.158113e-01	ci left: 5.737652e-04	ci right 6.448090e-04	k: 1144	n:1880000
Cons ci ratio: 3.594347e-03	ci left: 3.868078e-01	ci right 3.882011e-01	k: 728508	n:1880000
KS ci ratio: 2.000212e-01	ci left: 1.838308e-04	ci right 2.251814e-04	k: 383	n:1880000
FAM5B   1880000 perm   1656 sec   (1135 perm/sec)   p_kst 2.037234e-04   p_cons 3.875043e-01   p_joint 6.085106e-04

Joint ci ratio: 1.154589e-01	ci left: 5.743260e-04	ci right 6.452081e-04	k: 1151	n:1890000
Cons ci ratio: 3.584794e-03	ci left: 3.868138e-01	ci right 3.882035e-01	k: 732391	n:1890000
KS ci ratio: 1.992443e-01	ci left: 1.843661e-04	ci right 2.256565e-04	k: 386	n:1890000
FAM5B   1890000 perm   1672 sec   (1131 perm/sec)   p_kst 2.042328e-04   p_cons 3.875085e-01   p_joint 6.089947e-04

Joint ci ratio: 1.155092e-01	ci left: 5.707921e-04	ci right 6.412708e-04	k: 1150	n:1900000
Cons ci ratio: 3.575209e-03	ci left: 3.868340e-01	ci right 3.882200e-01	k: 736301	n:1900000
KS ci ratio: 1.989875e-01	ci left: 1.838958e-04	ci right 2.250213e-04	k: 387	n:1900000
FAM5B   1900000 perm   1687 sec   (1126 perm/sec)   p_kst 2.036842e-04   p_cons 3.875268e-01   p_joint 6.052632e-04

Joint ci ratio: 1.153091e-01	ci left: 5.698374e-04	ci right 6.400681e-04	k: 1154	n:1910000
Cons ci ratio: 3.565835e-03	ci left: 3.868362e-01	ci right 3.882186e-01	k: 740177	n:1910000
KS ci ratio: 1.984766e-01	ci left: 1.839280e-04	ci right 2.249424e-04	k: 389	n:1910000
FAM5B   1910000 perm   1703 sec   (1122 perm/sec)   p_kst 2.036649e-04   p_cons 3.875272e-01   p_joint 6.041885e-04

Joint ci ratio: 1.155598e-01	ci left: 5.643404e-04	ci right 6.340552e-04	k: 1149	n:1920000
Cons ci ratio: 3.556417e-03	ci left: 3.868540e-01	ci right 3.882328e-01	k: 744083	n:1920000
KS ci ratio: 1.979696e-01	ci left: 1.839600e-04	ci right 2.248641e-04	k: 391	n:1920000
FAM5B   1920000 perm   1718 sec   (1117 perm/sec)   p_kst 2.036458e-04   p_cons 3.875432e-01   p_joint 5.984375e-04

Joint ci ratio: 1.150605e-01	ci left: 5.664483e-04	ci right 6.361006e-04	k: 1159	n:1930000
Cons ci ratio: 3.547147e-03	ci left: 3.868618e-01	ci right 3.882370e-01	k: 747970	n:1930000
KS ci ratio: 1.972164e-01	ci left: 1.844844e-04	ci right 2.253302e-04	k: 394	n:1930000
FAM5B   1930000 perm   1734 sec   (1113 perm/sec)   p_kst 2.041451e-04   p_cons 3.875492e-01   p_joint 6.005181e-04

Joint ci ratio: 1.172033e-01	ci left: 5.425074e-04	ci right 6.105442e-04	k: 1117	n:1940000
Cons ci ratio: 3.538029e-03	ci left: 3.868587e-01	ci right 3.882303e-01	k: 751836	n:1940000
KS ci ratio: 1.969673e-01	ci left: 1.840235e-04	ci right 2.247096e-04	k: 395	n:1940000
FAM5B   1940000 perm   1750 sec   (1109 perm/sec)   p_kst 2.036082e-04   p_cons 3.875443e-01   p_joint 5.757732e-04

Joint ci ratio: 1.170987e-01	ci left: 5.407209e-04	ci right 6.084689e-04	k: 1119	n:1950000
Cons ci ratio: 3.528699e-03	ci left: 3.868935e-01	ci right 3.882617e-01	k: 755776	n:1950000
KS ci ratio: 1.962253e-01	ci left: 1.845425e-04	ci right 2.251713e-04	k: 398	n:1950000
FAM5B   1950000 perm   1765 sec   (1105 perm/sec)   p_kst 2.041026e-04   p_cons 3.875774e-01   p_joint 5.738462e-04

Joint ci ratio: 1.166310e-01	ci left: 5.424198e-04	ci right 6.100904e-04	k: 1128	n:1960000
Cons ci ratio: 3.519685e-03	ci left: 3.868954e-01	ci right 3.882600e-01	k: 759652	n:1960000
KS ci ratio: 1.957354e-01	ci left: 1.845713e-04	ci right 2.250929e-04	k: 400	n:1960000
FAM5B   1960000 perm   1781 sec   (1101 perm/sec)   p_kst 2.040816e-04   p_cons 3.875776e-01   p_joint 5.755102e-04

Joint ci ratio: 1.162710e-01	ci left: 5.431162e-04	ci right 6.106503e-04	k: 1135	n:1970000
Cons ci ratio: 3.510717e-03	ci left: 3.869003e-01	ci right 3.882615e-01	k: 763534	n:1970000
KS ci ratio: 1.952491e-01	ci left: 1.845999e-04	ci right 2.250151e-04	k: 402	n:1970000
FAM5B   1970000 perm   1796 sec   (1097 perm/sec)   p_kst 2.040609e-04   p_cons 3.875807e-01   p_joint 5.761421e-04

Joint ci ratio: 1.159652e-01	ci left: 5.433155e-04	ci right 6.106844e-04	k: 1141	n:1980000
Cons ci ratio: 3.501706e-03	ci left: 3.869203e-01	ci right 3.882780e-01	k: 767446	n:1980000
KS ci ratio: 1.942872e-01	ci left: 1.855893e-04	ci right 2.259973e-04	k: 406	n:1980000
FAM5B   1980000 perm   1813 sec   (1092 perm/sec)   p_kst 2.050505e-04   p_cons 3.875990e-01   p_joint 5.762626e-04

Joint ci ratio: 1.156114e-01	ci left: 5.440010e-04	ci right 6.112351e-04	k: 1148	n:1990000
Cons ci ratio: 3.493126e-03	ci left: 3.868909e-01	ci right 3.882452e-01	k: 771260	n:1990000
KS ci ratio: 1.935750e-01	ci left: 1.860910e-04	ci right 2.264422e-04	k: 409	n:1990000
FAM5B   1990000 perm   1829 sec   (1088 perm/sec)   p_kst 2.055276e-04   p_cons 3.875678e-01   p_joint 5.768844e-04

Joint ci ratio: 1.152608e-01	ci left: 5.446799e-04	ci right 6.117799e-04	k: 1155	n:2000000
Cons ci ratio: 3.484546e-03	ci left: 3.868702e-01	ci right 3.882211e-01	k: 775091	n:2000000
KS ci ratio: 1.931046e-01	ci left: 1.861122e-04	ci right 2.263584e-04	k: 411	n:2000000
FAM5B   2000000 perm   1846 sec   (1084 perm/sec)   p_kst 2.055000e-04   p_cons 3.875455e-01   p_joint 5.775000e-04

Joint ci ratio: 1.148639e-01	ci left: 5.458356e-04	ci right 6.128308e-04	k: 1163	n:2010000
Cons ci ratio: 3.475858e-03	ci left: 3.868732e-01	ci right 3.882207e-01	k: 778969	n:2010000
KS ci ratio: 1.926376e-01	ci left: 1.861332e-04	ci right 2.262752e-04	k: 413	n:2010000
FAM5B   2010000 perm   1862 sec   (1079 perm/sec)   p_kst 2.054726e-04   p_cons 3.875468e-01   p_joint 5.786070e-04

Joint ci ratio: 1.148148e-01	ci left: 5.436143e-04	ci right 6.103063e-04	k: 1164	n:2020000
Cons ci ratio: 3.467094e-03	ci left: 3.868954e-01	ci right 3.882396e-01	k: 782886	n:2020000
KS ci ratio: 1.919434e-01	ci left: 1.866254e-04	ci right 2.267116e-04	k: 416	n:2020000
FAM5B   2020000 perm   1879 sec   (1075 perm/sec)   p_kst 2.059406e-04   p_cons 3.875673e-01   p_joint 5.762376e-04

Joint ci ratio: 1.145202e-01	ci left: 5.438073e-04	ci right 6.103403e-04	k: 1170	n:2030000
Cons ci ratio: 3.458496e-03	ci left: 3.869036e-01	ci right 3.882445e-01	k: 786775	n:2030000
KS ci ratio: 1.912566e-01	ci left: 1.871131e-04	ci right 2.271434e-04	k: 419	n:2030000
FAM5B   2030000 perm   1895 sec   (1071 perm/sec)   p_kst 2.064039e-04   p_cons 3.875739e-01   p_joint 5.763547e-04

Joint ci ratio: 1.142765e-01	ci left: 5.435224e-04	ci right 6.098695e-04	k: 1175	n:2040000
Cons ci ratio: 3.450118e-03	ci left: 3.868902e-01	ci right 3.882278e-01	k: 790620	n:2040000
KS ci ratio: 1.912567e-01	ci left: 1.861958e-04	ci right 2.260300e-04	k: 419	n:2040000
FAM5B   2040000 perm   1911 sec   (1067 perm/sec)   p_kst 2.053922e-04   p_cons 3.875588e-01   p_joint 5.759804e-04

Joint ci ratio: 1.145695e-01	ci left: 5.380279e-04	ci right 6.038841e-04	k: 1169	n:2050000
Cons ci ratio: 3.441705e-03	ci left: 3.868901e-01	ci right 3.882244e-01	k: 794492	n:2050000
KS ci ratio: 1.912568e-01	ci left: 1.852875e-04	ci right 2.249274e-04	k: 419	n:2050000
FAM5B   2050000 perm   1928 sec   (1063 perm/sec)   p_kst 2.043902e-04   p_cons 3.875571e-01   p_joint 5.702439e-04

Joint ci ratio: 1.142769e-01	ci left: 5.382454e-04	ci right 6.039485e-04	k: 1175	n:2060000
Cons ci ratio: 3.433105e-03	ci left: 3.869244e-01	ci right 3.882555e-01	k: 798435	n:2060000
KS ci ratio: 1.912569e-01	ci left: 1.843881e-04	ci right 2.238355e-04	k: 419	n:2060000
FAM5B   2060000 perm   1945 sec   (1059 perm/sec)   p_kst 2.033981e-04   p_cons 3.875898e-01   p_joint 5.703883e-04

Joint ci ratio: 1.139864e-01	ci left: 5.384610e-04	ci right 6.040122e-04	k: 1181	n:2070000
Cons ci ratio: 3.424900e-03	ci left: 3.869126e-01	ci right 3.882404e-01	k: 802283	n:2070000
KS ci ratio: 1.910296e-01	ci left: 1.839573e-04	ci right 2.232604e-04	k: 420	n:2070000
FAM5B   2070000 perm   1961 sec   (1055 perm/sec)   p_kst 2.028986e-04   p_cons 3.875763e-01   p_joint 5.705314e-04

Joint ci ratio: 1.136504e-01	ci left: 5.391418e-04	ci right 6.045694e-04	k: 1188	n:2080000
Cons ci ratio: 3.416590e-03	ci left: 3.869234e-01	ci right 3.882481e-01	k: 806178	n:2080000
KS ci ratio: 1.903526e-01	ci left: 1.844463e-04	ci right 2.236981e-04	k: 423	n:2080000
FAM5B   2080000 perm   1978 sec   (1052 perm/sec)   p_kst 2.033654e-04   p_cons 3.875856e-01   p_joint 5.711538e-04

Joint ci ratio: 1.141802e-01	ci left: 5.314489e-04	ci right 5.962638e-04	k: 1177	n:2090000
Cons ci ratio: 3.408434e-03	ci left: 3.869212e-01	ci right 3.882427e-01	k: 810046	n:2090000
KS ci ratio: 1.901286e-01	ci left: 1.840195e-04	ci right 2.231290e-04	k: 424	n:2090000
FAM5B   2090000 perm   1995 sec   (1048 perm/sec)   p_kst 2.028708e-04   p_cons 3.875818e-01   p_joint 5.631579e-04

Joint ci ratio: 1.139869e-01	ci left: 5.307686e-04	ci right 5.953836e-04	k: 1181	n:2100000
Cons ci ratio: 3.400264e-03	ci left: 3.869291e-01	ci right 3.882474e-01	k: 813935	n:2100000
KS ci ratio: 1.899053e-01	ci left: 1.835967e-04	ci right 2.225653e-04	k: 425	n:2100000
FAM5B   2100000 perm   2012 sec   (1044 perm/sec)   p_kst 2.023810e-04   p_cons 3.875881e-01   p_joint 5.623810e-04

Joint ci ratio: 1.137466e-01	ci left: 5.305552e-04	ci right 5.949990e-04	k: 1186	n:2110000
Cons ci ratio: 3.392091e-03	ci left: 3.869454e-01	ci right 3.882606e-01	k: 817842	n:2110000
KS ci ratio: 1.892401e-01	ci left: 1.840809e-04	ci right 2.229997e-04	k: 428	n:2110000
FAM5B   2110000 perm   2029 sec   (1040 perm/sec)   p_kst 2.028436e-04   p_cons 3.876028e-01   p_joint 5.620853e-04

Joint ci ratio: 1.134602e-01	ci left: 5.308024e-04	ci right 5.951029e-04	k: 1192	n:2120000
Cons ci ratio: 3.383860e-03	ci left: 3.869780e-01	ci right 3.882902e-01	k: 821784	n:2120000
KS ci ratio: 1.885818e-01	ci left: 1.845608e-04	ci right 2.234297e-04	k: 431	n:2120000
FAM5B   2120000 perm   2046 sec   (1036 perm/sec)   p_kst 2.033019e-04   p_cons 3.876340e-01   p_joint 5.622642e-04

Joint ci ratio: 1.131759e-01	ci left: 5.310474e-04	ci right 5.952057e-04	k: 1198	n:2130000
Cons ci ratio: 3.375808e-03	ci left: 3.869935e-01	ci right 3.883026e-01	k: 825690	n:2130000
KS ci ratio: 1.885819e-01	ci left: 1.836943e-04	ci right 2.223808e-04	k: 431	n:2130000
FAM5B   2130000 perm   2063 sec   (1032 perm/sec)   p_kst 2.023474e-04   p_cons 3.876479e-01   p_joint 5.624413e-04

Joint ci ratio: 1.129407e-01	ci left: 5.308363e-04	ci right 5.948269e-04	k: 1203	n:2140000
Cons ci ratio: 3.367791e-03	ci left: 3.870121e-01	ci right 3.883181e-01	k: 829603	n:2140000
KS ci ratio: 1.879305e-01	ci left: 1.841718e-04	ci right 2.228095e-04	k: 434	n:2140000
FAM5B   2140000 perm   2081 sec   (1029 perm/sec)   p_kst 2.028037e-04   p_cons 3.876650e-01   p_joint 5.621495e-04

Joint ci ratio: 1.127069e-01	ci left: 5.306272e-04	ci right 5.944514e-04	k: 1208	n:2150000
Cons ci ratio: 3.360205e-03	ci left: 3.869775e-01	ci right 3.882805e-01	k: 833402	n:2150000
KS ci ratio: 1.877149e-01	ci left: 1.837584e-04	ci right 2.222601e-04	k: 435	n:2150000
FAM5B   2150000 perm   2098 sec   (1025 perm/sec)   p_kst 2.023256e-04   p_cons 3.876288e-01   p_joint 5.618605e-04

Joint ci ratio: 1.125210e-01	ci left: 5.299703e-04	ci right 5.936034e-04	k: 1212	n:2160000
Cons ci ratio: 3.352252e-03	ci left: 3.870025e-01	ci right 3.883024e-01	k: 837329	n:2160000
KS ci ratio: 1.875000e-01	ci left: 1.833489e-04	ci right 2.217158e-04	k: 436	n:2160000
FAM5B   2160000 perm   2115 sec   (1021 perm/sec)   p_kst 2.018519e-04   p_cons 3.876523e-01   p_joint 5.611111e-04

Joint ci ratio: 1.156141e-01	ci left: 4.988758e-04	ci right 5.605344e-04	k: 1148	n:2170000
Cons ci ratio: 3.426567e-03	ci left: 3.755660e-01	ci right 3.768555e-01	k: 816377	n:2170000
KS ci ratio: 1.866477e-01	ci left: 1.842609e-04	ci right 2.226236e-04	k: 440	n:2170000
FAM5B   2170000 perm   2133 sec   (1018 perm/sec)   p_kst 2.027650e-04   p_cons 3.762106e-01   p_joint 5.290323e-04

Joint ci ratio: 1.155137e-01	ci left: 4.974783e-04	ci right 5.589071e-04	k: 1150	n:2180000
Cons ci ratio: 3.418619e-03	ci left: 3.755784e-01	ci right 3.768650e-01	k: 820163	n:2180000
KS ci ratio: 1.864364e-01	ci left: 1.838530e-04	ci right 2.220825e-04	k: 441	n:2180000
FAM5B   2180000 perm   2150 sec   (1014 perm/sec)   p_kst 2.022936e-04   p_cons 3.762216e-01   p_joint 5.275229e-04

Joint ci ratio: 1.152138e-01	ci left: 4.978673e-04	ci right 5.591737e-04	k: 1156	n:2190000
Cons ci ratio: 3.410617e-03	ci left: 3.756058e-01	ci right 3.768895e-01	k: 823982	n:2190000
KS ci ratio: 1.860161e-01	ci left: 1.838842e-04	ci right 2.220242e-04	k: 443	n:2190000
FAM5B   2190000 perm   2168 sec   (1010 perm/sec)   p_kst 2.022831e-04   p_cons 3.762475e-01   p_joint 5.278539e-04

Joint ci ratio: 1.155643e-01	ci left: 4.925142e-04	ci right 5.533585e-04	k: 1149	n:2200000
Cons ci ratio: 3.402895e-03	ci left: 3.756021e-01	ci right 3.768828e-01	k: 827733	n:2200000
KS ci ratio: 1.853908e-01	ci left: 1.843486e-04	ci right 2.224420e-04	k: 446	n:2200000
FAM5B   2200000 perm   2185 sec   (1007 perm/sec)   p_kst 2.027273e-04   p_cons 3.762423e-01   p_joint 5.222727e-04

Joint ci ratio: 1.150649e-01	ci left: 4.946801e-04	ci right 5.555099e-04	k: 1159	n:2210000
Cons ci ratio: 3.395077e-03	ci left: 3.756187e-01	ci right 3.768966e-01	k: 831529	n:2210000
KS ci ratio: 1.843624e-01	ci left: 1.856722e-04	ci right 2.238025e-04	k: 451	n:2210000
FAM5B   2210000 perm   2203 sec   (1003 perm/sec)   p_kst 2.040724e-04   p_cons 3.762575e-01   p_joint 5.244344e-04

Joint ci ratio: 1.166866e-01	ci left: 4.784549e-04	ci right 5.381759e-04	k: 1127	n:2220000
Cons ci ratio: 3.387317e-03	ci left: 3.756347e-01	ci right 3.769097e-01	k: 835324	n:2220000
KS ci ratio: 1.839559e-01	ci left: 1.856952e-04	ci right 2.237367e-04	k: 453	n:2220000
FAM5B   2220000 perm   2221 sec   (1000 perm/sec)   p_kst 2.040541e-04   p_cons 3.762721e-01   p_joint 5.076577e-04

Joint ci ratio: 1.165318e-01	ci left: 4.776154e-04	ci right 5.371471e-04	k: 1130	n:2230000
Cons ci ratio: 3.379835e-03	ci left: 3.756193e-01	ci right 3.768914e-01	k: 839049	n:2230000
KS ci ratio: 1.835520e-01	ci left: 1.857181e-04	ci right 2.236715e-04	k: 455	n:2230000
FAM5B   2230000 perm   2239 sec   (996 perm/sec)   p_kst 2.040359e-04   p_cons 3.762552e-01   p_joint 5.067265e-04

Joint ci ratio: 1.163263e-01	ci left: 4.772169e-04	ci right 5.365868e-04	k: 1134	n:2240000
Cons ci ratio: 3.372178e-03	ci left: 3.756352e-01	ci right 3.769044e-01	k: 842844	n:2240000
KS ci ratio: 1.835521e-01	ci left: 1.848890e-04	ci right 2.226730e-04	k: 455	n:2240000
FAM5B   2240000 perm   2257 sec   (993 perm/sec)   p_kst 2.031250e-04   p_cons 3.762696e-01   p_joint 5.062500e-04

Joint ci ratio: 1.160709e-01	ci left: 4.772536e-04	ci right 5.364888e-04	k: 1139	n:2250000
Cons ci ratio: 3.364462e-03	ci left: 3.756665e-01	ci right 3.769329e-01	k: 846674	n:2250000
KS ci ratio: 1.831509e-01	ci left: 1.849153e-04	ci right 2.226130e-04	k: 457	n:2250000
FAM5B   2250000 perm   2275 sec   (989 perm/sec)   p_kst 2.031111e-04   p_cons 3.762996e-01   p_joint 5.062222e-04

Joint ci ratio: 1.158172e-01	ci left: 4.772901e-04	ci right 5.363914e-04	k: 1144	n:2260000
Cons ci ratio: 3.356959e-03	ci left: 3.756750e-01	ci right 3.769386e-01	k: 850453	n:2260000
KS ci ratio: 1.829513e-01	ci left: 1.845193e-04	ci right 2.220907e-04	k: 458	n:2260000
FAM5B   2260000 perm   2293 sec   (986 perm/sec)   p_kst 2.026549e-04   p_cons 3.763066e-01   p_joint 5.061947e-04

Joint ci ratio: 1.155149e-01	ci left: 4.777542e-04	ci right 5.367481e-04	k: 1150	n:2270000
Cons ci ratio: 3.349611e-03	ci left: 3.756688e-01	ci right 3.769297e-01	k: 854199	n:2270000
KS ci ratio: 1.823563e-01	ci left: 1.849676e-04	ci right 2.224942e-04	k: 461	n:2270000
FAM5B   2270000 perm   2311 sec   (982 perm/sec)   p_kst 2.030837e-04   p_cons 3.762991e-01   p_joint 5.066079e-04

Joint ci ratio: 1.066178e-01	ci left: 5.609464e-04	ci right 6.245437e-04	k: 1350	n:2280000
Cons ci ratio: 3.302209e-03	ci left: 3.813434e-01	ci right 3.826052e-01	k: 870901	n:2280000
KS ci ratio: 1.819629e-01	ci left: 1.849936e-04	ci right 2.224355e-04	k: 463	n:2280000
FAM5B   2280000 perm   2329 sec   (979 perm/sec)   p_kst 2.030702e-04   p_cons 3.819741e-01   p_joint 5.921053e-04

Joint ci ratio: 1.064210e-01	ci left: 5.606221e-04	ci right 6.240580e-04	k: 1355	n:2290000
Cons ci ratio: 3.294994e-03	ci left: 3.813444e-01	ci right 3.826035e-01	k: 874720	n:2290000
KS ci ratio: 1.811835e-01	ci left: 1.858531e-04	ci right 2.232902e-04	k: 467	n:2290000
FAM5B   2290000 perm   2347 sec   (976 perm/sec)   p_kst 2.039301e-04   p_cons 3.819738e-01   p_joint 5.917031e-04

Joint ci ratio: 1.062254e-01	ci left: 5.603007e-04	ci right 6.235764e-04	k: 1360	n:2300000
Cons ci ratio: 3.287638e-03	ci left: 3.813724e-01	ci right 3.826287e-01	k: 878601	n:2300000
KS ci ratio: 1.804141e-01	ci left: 1.867054e-04	ci right 2.241371e-04	k: 471	n:2300000
FAM5B   2300000 perm   2366 sec   (972 perm/sec)   p_kst 2.047826e-04   p_cons 3.820004e-01   p_joint 5.913043e-04

Joint ci ratio: 1.068559e-01	ci left: 5.511332e-04	ci right 6.137662e-04	k: 1344	n:2310000
Cons ci ratio: 3.280448e-03	ci left: 3.813833e-01	ci right 3.826369e-01	k: 882443	n:2310000
KS ci ratio: 1.804142e-01	ci left: 1.858972e-04	ci right 2.231669e-04	k: 471	n:2310000
FAM5B   2310000 perm   2384 sec   (969 perm/sec)   p_kst 2.038961e-04   p_cons 3.820100e-01   p_joint 5.818182e-04

Joint ci ratio: 1.065394e-01	ci left: 5.521139e-04	ci right 6.146609e-04	k: 1352	n:2320000
Cons ci ratio: 3.273239e-03	ci left: 3.814036e-01	ci right 3.826545e-01	k: 886307	n:2320000
KS ci ratio: 1.802234e-01	ci left: 1.855075e-04	ci right 2.226554e-04	k: 472	n:2320000
FAM5B   2320000 perm   2402 sec   (966 perm/sec)   p_kst 2.034483e-04   p_cons 3.820289e-01   p_joint 5.827586e-04

Joint ci ratio: 1.063040e-01	ci left: 5.522508e-04	ci right 6.146665e-04	k: 1358	n:2330000
Cons ci ratio: 3.266140e-03	ci left: 3.814147e-01	ci right 3.826629e-01	k: 890150	n:2330000
KS ci ratio: 1.794661e-01	ci left: 1.863508e-04	ci right 2.234937e-04	k: 476	n:2330000
FAM5B   2330000 perm   2421 sec   (962 perm/sec)   p_kst 2.042918e-04   p_cons 3.820386e-01   p_joint 5.828326e-04

Joint ci ratio: 1.074171e-01	ci left: 5.382446e-04	ci right 5.997545e-04	k: 1330	n:2340000
Cons ci ratio: 3.259039e-03	ci left: 3.814325e-01	ci right 3.826780e-01	k: 894009	n:2340000
KS ci ratio: 1.792783e-01	ci left: 1.859626e-04	ci right 2.229852e-04	k: 477	n:2340000
FAM5B   2340000 perm   2439 sec   (959 perm/sec)   p_kst 2.038462e-04   p_cons 3.820551e-01   p_joint 5.683761e-04

Joint ci ratio: 1.070157e-01	ci left: 5.400954e-04	ci right 6.015717e-04	k: 1340	n:2350000
Cons ci ratio: 3.252270e-03	ci left: 3.814089e-01	ci right 3.826518e-01	k: 897771	n:2350000
KS ci ratio: 1.789044e-01	ci left: 1.859842e-04	ci right 2.229255e-04	k: 479	n:2350000
FAM5B   2350000 perm   2458 sec   (956 perm/sec)   p_kst 2.038298e-04   p_cons 3.820302e-01   p_joint 5.702128e-04

Joint ci ratio: 1.070958e-01	ci left: 5.369820e-04	ci right 5.981526e-04	k: 1338	n:2360000
Cons ci ratio: 3.245207e-03	ci left: 3.814343e-01	ci right 3.826745e-01	k: 901648	n:2360000
KS ci ratio: 1.785328e-01	ci left: 1.860056e-04	ci right 2.228662e-04	k: 481	n:2360000
FAM5B   2360000 perm   2477 sec   (953 perm/sec)   p_kst 2.038136e-04   p_cons 3.820542e-01   p_joint 5.669492e-04

Joint ci ratio: 1.069761e-01	ci left: 5.359482e-04	ci right 5.969284e-04	k: 1341	n:2370000
Cons ci ratio: 3.238274e-03	ci left: 3.814472e-01	ci right 3.826848e-01	k: 905496	n:2370000
KS ci ratio: 1.779798e-01	ci left: 1.864301e-04	ci right 2.232481e-04	k: 484	n:2370000
FAM5B   2370000 perm   2495 sec   (950 perm/sec)   p_kst 2.042194e-04   p_cons 3.820658e-01   p_joint 5.658228e-04

Joint ci ratio: 1.068568e-01	ci left: 5.349231e-04	ci right 5.957145e-04	k: 1344	n:2380000
Cons ci ratio: 3.231638e-03	ci left: 3.814230e-01	ci right 3.826580e-01	k: 909256	n:2380000
KS ci ratio: 1.777966e-01	ci left: 1.860483e-04	ci right 2.227489e-04	k: 485	n:2380000
FAM5B   2380000 perm   2514 sec   (947 perm/sec)   p_kst 2.037815e-04   p_cons 3.820403e-01   p_joint 5.647059e-04

Joint ci ratio: 1.068569e-01	ci left: 5.326849e-04	ci right 5.932221e-04	k: 1344	n:2390000
Cons ci ratio: 3.224877e-03	ci left: 3.814233e-01	ci right 3.826557e-01	k: 913074	n:2390000
KS ci ratio: 1.774319e-01	ci left: 1.860695e-04	ci right 2.226909e-04	k: 487	n:2390000
FAM5B   2390000 perm   2533 sec   (943 perm/sec)   p_kst 2.037657e-04   p_cons 3.820393e-01   p_joint 5.623431e-04

Joint ci ratio: 1.094099e-01	ci left: 5.053302e-04	ci right 5.642191e-04	k: 1282	n:2400000
Cons ci ratio: 3.218050e-03	ci left: 3.814394e-01	ci right 3.826692e-01	k: 916930	n:2400000
KS ci ratio: 1.770694e-01	ci left: 1.860905e-04	ci right 2.226333e-04	k: 489	n:2400000
FAM5B   2400000 perm   2552 sec   (940 perm/sec)   p_kst 2.037500e-04   p_cons 3.820542e-01   p_joint 5.341667e-04

Joint ci ratio: 1.092398e-01	ci left: 5.048478e-04	ci right 5.635831e-04	k: 1286	n:2410000
Cons ci ratio: 3.211495e-03	ci left: 3.814218e-01	ci right 3.826491e-01	k: 920705	n:2410000
KS ci ratio: 1.767092e-01	ci left: 1.861115e-04	ci right 2.225761e-04	k: 491	n:2410000
FAM5B   2410000 perm   2572 sec   (937 perm/sec)   p_kst 2.037344e-04   p_cons 3.820353e-01   p_joint 5.336100e-04

Joint ci ratio: 1.091550e-01	ci left: 5.035655e-04	ci right 5.621033e-04	k: 1288	n:2420000
Cons ci ratio: 3.204868e-03	ci left: 3.814208e-01	ci right 3.826456e-01	k: 924520	n:2420000
KS ci ratio: 1.765299e-01	ci left: 1.857374e-04	ci right 2.220878e-04	k: 492	n:2420000
FAM5B   2420000 perm   2591 sec   (934 perm/sec)   p_kst 2.033058e-04   p_cons 3.820331e-01   p_joint 5.322314e-04

Joint ci ratio: 1.098394e-01	ci left: 4.950891e-04	ci right 5.530256e-04	k: 1272	n:2430000
Cons ci ratio: 3.198335e-03	ci left: 3.814121e-01	ci right 3.826343e-01	k: 928316	n:2430000
KS ci ratio: 1.759952e-01	ci left: 1.861532e-04	ci right 2.224628e-04	k: 495	n:2430000
FAM5B   2430000 perm   2611 sec   (931 perm/sec)   p_kst 2.037037e-04   p_cons 3.820230e-01   p_joint 5.234568e-04

Joint ci ratio: 1.096243e-01	ci left: 4.950529e-04	ci right 5.528645e-04	k: 1277	n:2440000
Cons ci ratio: 3.191697e-03	ci left: 3.814247e-01	ci right 3.826444e-01	k: 932164	n:2440000
KS ci ratio: 1.756414e-01	ci left: 1.861738e-04	ci right 2.224068e-04	k: 497	n:2440000
FAM5B   2440000 perm   2630 sec   (928 perm/sec)   p_kst 2.036885e-04   p_cons 3.820344e-01   p_joint 5.233607e-04

Joint ci ratio: 1.092402e-01	ci left: 4.966053e-04	ci right 5.543819e-04	k: 1286	n:2450000
Cons ci ratio: 3.185249e-03	ci left: 3.814152e-01	ci right 3.826324e-01	k: 935958	n:2450000
KS ci ratio: 1.749402e-01	ci left: 1.869750e-04	ci right 2.232032e-04	k: 501	n:2450000
FAM5B   2450000 perm   2649 sec   (925 perm/sec)   p_kst 2.044898e-04   p_cons 3.820237e-01   p_joint 5.248980e-04

Joint ci ratio: 1.093254e-01	ci left: 4.937957e-04	ci right 5.512931e-04	k: 1284	n:2460000
Cons ci ratio: 3.178865e-03	ci left: 3.814021e-01	ci right 3.826169e-01	k: 939743	n:2460000
KS ci ratio: 1.747663e-01	ci left: 1.866036e-04	ci right 2.227202e-04	k: 502	n:2460000
FAM5B   2460000 perm   2669 sec   (922 perm/sec)   p_kst 2.040650e-04   p_cons 3.820093e-01   p_joint 5.219512e-04

Joint ci ratio: 1.092829e-01	ci left: 4.921903e-04	ci right 5.494771e-04	k: 1285	n:2470000
Cons ci ratio: 3.172299e-03	ci left: 3.814219e-01	ci right 3.826342e-01	k: 943609	n:2470000
KS ci ratio: 1.747663e-01	ci left: 1.858481e-04	ci right 2.218185e-04	k: 502	n:2470000
FAM5B   2470000 perm   2688 sec   (919 perm/sec)   p_kst 2.032389e-04   p_cons 3.820279e-01   p_joint 5.202429e-04

Joint ci ratio: 1.091558e-01	ci left: 4.913823e-04	ci right 5.485042e-04	k: 1288	n:2480000
Cons ci ratio: 3.165800e-03	ci left: 3.814376e-01	ci right 3.826474e-01	k: 947465	n:2480000
KS ci ratio: 1.747664e-01	ci left: 1.850987e-04	ci right 2.209241e-04	k: 502	n:2480000
FAM5B   2480000 perm   2708 sec   (916 perm/sec)   p_kst 2.024194e-04   p_cons 3.820423e-01   p_joint 5.193548e-04

Joint ci ratio: 1.089026e-01	ci left: 4.917528e-04	ci right 5.487767e-04	k: 1294	n:2490000
Cons ci ratio: 3.159510e-03	ci left: 3.814278e-01	ci right 3.826352e-01	k: 951258	n:2490000
KS ci ratio: 1.744200e-01	ci left: 1.851235e-04	ci right 2.208751e-04	k: 504	n:2490000
FAM5B   2490000 perm   2728 sec   (913 perm/sec)   p_kst 2.024096e-04   p_cons 3.820313e-01   p_joint 5.196787e-04

Joint ci ratio: 1.087348e-01	ci left: 4.913422e-04	ci right 5.482251e-04	k: 1298	n:2500000
Cons ci ratio: 3.153079e-03	ci left: 3.814448e-01	ci right 3.826498e-01	k: 955118	n:2500000
KS ci ratio: 1.737332e-01	ci left: 1.859133e-04	ci right 2.216612e-04	k: 508	n:2500000
FAM5B   2500000 perm   2747 sec   (910 perm/sec)   p_kst 2.032000e-04   p_cons 3.820472e-01   p_joint 5.192000e-04

Joint ci ratio: 1.085678e-01	ci left: 4.909350e-04	ci right 5.476779e-04	k: 1302	n:2510000
Cons ci ratio: 3.146931e-03	ci left: 3.814251e-01	ci right 3.826277e-01	k: 958886	n:2510000
KS ci ratio: 1.733929e-01	ci left: 1.859348e-04	ci right 2.216095e-04	k: 510	n:2510000
FAM5B   2510000 perm   2767 sec   (907 perm/sec)   p_kst 2.031873e-04   p_cons 3.820263e-01   p_joint 5.187251e-04

Joint ci ratio: 1.084846e-01	ci left: 4.897590e-04	ci right 5.463197e-04	k: 1304	n:2520000
Cons ci ratio: 3.140811e-03	ci left: 3.814068e-01	ci right 3.826070e-01	k: 962657	n:2520000
KS ci ratio: 1.733930e-01	ci left: 1.851970e-04	ci right 2.207301e-04	k: 510	n:2520000
FAM5B   2520000 perm   2787 sec   (904 perm/sec)   p_kst 2.023810e-04   p_cons 3.820067e-01   p_joint 5.174603e-04

Joint ci ratio: 1.081948e-01	ci left: 4.905150e-04	ci right 5.470021e-04	k: 1311	n:2530000
Cons ci ratio: 3.134708e-03	ci left: 3.813914e-01	ci right 3.825892e-01	k: 966435	n:2530000
KS ci ratio: 1.728862e-01	ci left: 1.855993e-04	ci right 2.210948e-04	k: 513	n:2530000
FAM5B   2530000 perm   2807 sec   (901 perm/sec)   p_kst 2.027668e-04   p_cons 3.819901e-01   p_joint 5.181818e-04

Joint ci ratio: 1.080714e-01	ci left: 4.897330e-04	ci right 5.460616e-04	k: 1314	n:2540000
Cons ci ratio: 3.128367e-03	ci left: 3.814174e-01	ci right 3.826128e-01	k: 970318	n:2540000
KS ci ratio: 1.728863e-01	ci left: 1.848686e-04	ci right 2.202243e-04	k: 513	n:2540000
FAM5B   2540000 perm   2827 sec   (899 perm/sec)   p_kst 2.019685e-04   p_cons 3.820150e-01   p_joint 5.173228e-04

Joint ci ratio: 1.086935e-01	ci left: 4.820895e-04	ci right 5.378786e-04	k: 1299	n:2550000
Cons ci ratio: 3.122232e-03	ci left: 3.814177e-01	ci right 3.826108e-01	k: 974136	n:2550000
KS ci ratio: 1.723839e-01	ci left: 1.852693e-04	ci right 2.205880e-04	k: 516	n:2550000
FAM5B   2550000 perm   2847 sec   (896 perm/sec)   p_kst 2.023529e-04   p_cons 3.820141e-01   p_joint 5.094118e-04

Joint ci ratio: 1.100139e-01	ci left: 4.684279e-04	ci right 5.233372e-04	k: 1268	n:2560000
Cons ci ratio: 3.116129e-03	ci left: 3.814188e-01	ci right 3.826096e-01	k: 977956	n:2560000
KS ci ratio: 1.717208e-01	ci left: 1.860408e-04	ci right 2.213560e-04	k: 520	n:2560000
FAM5B   2560000 perm   2867 sec   (893 perm/sec)   p_kst 2.031250e-04   p_cons 3.820141e-01   p_joint 4.953125e-04

Joint ci ratio: 1.099274e-01	ci left: 4.673620e-04	ci right 5.221005e-04	k: 1270	n:2570000
Cons ci ratio: 3.110073e-03	ci left: 3.814180e-01	ci right 3.826064e-01	k: 981771	n:2570000
KS ci ratio: 1.715563e-01	ci left: 1.856893e-04	ci right 2.209005e-04	k: 521	n:2570000
FAM5B   2570000 perm   2888 sec   (890 perm/sec)   p_kst 2.027237e-04   p_cons 3.820121e-01   p_joint 4.941634e-04

Joint ci ratio: 1.096688e-01	ci left: 4.678123e-04	ci right 5.224663e-04	k: 1276	n:2580000
Cons ci ratio: 3.103834e-03	ci left: 3.814505e-01	ci right 3.826366e-01	k: 985672	n:2580000
KS ci ratio: 1.710654e-01	ci left: 1.860825e-04	ci right 2.212569e-04	k: 524	n:2580000
FAM5B   2580000 perm   2908 sec   (887 perm/sec)   p_kst 2.031008e-04   p_cons 3.820434e-01   p_joint 4.945736e-04

Joint ci ratio: 1.092418e-01	ci left: 4.697614e-04	ci right 5.244157e-04	k: 1286	n:2590000
Cons ci ratio: 3.097898e-03	ci left: 3.814422e-01	ci right 3.826260e-01	k: 989468	n:2590000
KS ci ratio: 1.702565e-01	ci left: 1.872121e-04	ci right 2.224155e-04	k: 529	n:2590000
FAM5B   2590000 perm   2928 sec   (885 perm/sec)   p_kst 2.042471e-04   p_cons 3.820340e-01   p_joint 4.965251e-04

Joint ci ratio: 1.091995e-01	ci left: 4.683287e-04	ci right 5.227938e-04	k: 1287	n:2600000
Cons ci ratio: 3.092027e-03	ci left: 3.814293e-01	ci right 3.826109e-01	k: 993252	n:2600000
KS ci ratio: 1.700961e-01	ci left: 1.868603e-04	ci right 2.219610e-04	k: 530	n:2600000
FAM5B   2600000 perm   2949 sec   (882 perm/sec)   p_kst 2.038462e-04   p_cons 3.820200e-01   p_joint 4.950000e-04

Joint ci ratio: 1.088618e-01	ci left: 4.695159e-04	ci right 5.239395e-04	k: 1295	n:2610000
Cons ci ratio: 3.086176e-03	ci left: 3.814185e-01	ci right 3.825978e-01	k: 997041	n:2610000
KS ci ratio: 1.696176e-01	ci left: 1.872449e-04	ci right 2.223088e-04	k: 533	n:2610000
FAM5B   2610000 perm   2969 sec   (879 perm/sec)   p_kst 2.042146e-04   p_cons 3.820080e-01   p_joint 4.961686e-04

Joint ci ratio: 1.086942e-01	ci left: 4.692090e-04	ci right 5.235080e-04	k: 1299	n:2620000
Cons ci ratio: 3.080216e-03	ci left: 3.814295e-01	ci right 3.826066e-01	k: 1000887	n:2620000
KS ci ratio: 1.693009e-01	ci left: 1.872612e-04	ci right 2.222560e-04	k: 535	n:2620000
FAM5B   2620000 perm   2989 sec   (876 perm/sec)   p_kst 2.041985e-04   p_cons 3.820179e-01   p_joint 4.958015e-04

Joint ci ratio: 1.083199e-01	ci left: 4.707542e-04	ci right 5.250323e-04	k: 1308	n:2630000
Cons ci ratio: 3.074417e-03	ci left: 3.814211e-01	ci right 3.825959e-01	k: 1004682	n:2630000
KS ci ratio: 1.688290e-01	ci left: 1.876416e-04	ci right 2.225998e-04	k: 538	n:2630000
FAM5B   2630000 perm   3010 sec   (874 perm/sec)   p_kst 2.045627e-04   p_cons 3.820084e-01   p_joint 4.973384e-04

Joint ci ratio: 1.081960e-01	ci left: 4.700766e-04	ci right 5.242107e-04	k: 1311	n:2640000
Cons ci ratio: 3.068640e-03	ci left: 3.814142e-01	ci right 3.825868e-01	k: 1008481	n:2640000
KS ci ratio: 1.688291e-01	ci left: 1.869309e-04	ci right 2.217567e-04	k: 538	n:2640000
FAM5B   2640000 perm   3031 sec   (871 perm/sec)   p_kst 2.037879e-04   p_cons 3.820004e-01   p_joint 4.965909e-04

Joint ci ratio: 1.079904e-01	ci left: 4.701385e-04	ci right 5.241703e-04	k: 1316	n:2650000
Cons ci ratio: 3.063048e-03	ci left: 3.813840e-01	ci right 3.825544e-01	k: 1012218	n:2650000
KS ci ratio: 1.683612e-01	ci left: 1.873098e-04	ci right 2.220997e-04	k: 541	n:2650000
FAM5B   2650000 perm   3052 sec   (868 perm/sec)   p_kst 2.041509e-04   p_cons 3.819691e-01   p_joint 4.966038e-04

Joint ci ratio: 1.078677e-01	ci left: 4.694684e-04	ci right 5.233580e-04	k: 1319	n:2660000
Cons ci ratio: 3.056983e-03	ci left: 3.814318e-01	ci right 3.826000e-01	k: 1016162	n:2660000
KS ci ratio: 1.683612e-01	ci left: 1.866056e-04	ci right 2.212647e-04	k: 541	n:2660000
FAM5B   2660000 perm   3073 sec   (866 perm/sec)   p_kst 2.033835e-04   p_cons 3.820158e-01   p_joint 4.958647e-04

Joint ci ratio: 1.079087e-01	ci left: 4.673457e-04	ci right 5.210132e-04	k: 1318	n:2670000
Cons ci ratio: 3.051105e-03	ci left: 3.814557e-01	ci right 3.826217e-01	k: 1020043	n:2670000
KS ci ratio: 1.682062e-01	ci left: 1.862655e-04	ci right 2.208263e-04	k: 542	n:2670000
FAM5B   2670000 perm   3093 sec   (863 perm/sec)   p_kst 2.029963e-04   p_cons 3.820386e-01   p_joint 4.936330e-04

Joint ci ratio: 1.075018e-01	ci left: 4.692327e-04	ci right 5.229010e-04	k: 1328	n:2680000
Cons ci ratio: 3.045324e-03	ci left: 3.814697e-01	ci right 3.826335e-01	k: 1023898	n:2680000
KS ci ratio: 1.675900e-01	ci left: 1.870003e-04	ci right 2.215575e-04	k: 546	n:2680000
FAM5B   2680000 perm   3114 sec   (861 perm/sec)   p_kst 2.037313e-04   p_cons 3.820515e-01   p_joint 4.955224e-04

Joint ci ratio: 1.072599e-01	ci left: 4.696589e-04	ci right 5.232474e-04	k: 1334	n:2690000
Cons ci ratio: 3.039856e-03	ci left: 3.814401e-01	ci right 3.826018e-01	k: 1027636	n:2690000
KS ci ratio: 1.674370e-01	ci left: 1.866613e-04	ci right 2.211212e-04	k: 547	n:2690000
FAM5B   2690000 perm   3135 sec   (858 perm/sec)   p_kst 2.033457e-04   p_cons 3.820208e-01   p_joint 4.959108e-04

Joint ci ratio: 1.071397e-01	ci left: 4.690008e-04	ci right 5.224504e-04	k: 1337	n:2700000
Cons ci ratio: 3.034270e-03	ci left: 3.814337e-01	ci right 3.825932e-01	k: 1031436	n:2700000
KS ci ratio: 1.672845e-01	ci left: 1.863248e-04	ci right 2.206881e-04	k: 548	n:2700000
FAM5B   2700000 perm   3157 sec   (855 perm/sec)   p_kst 2.029630e-04   p_cons 3.820133e-01   p_joint 4.951852e-04

Joint ci ratio: 1.070597e-01	ci left: 4.679884e-04	ci right 5.212803e-04	k: 1339	n:2710000
Cons ci ratio: 3.028534e-03	ci left: 3.814554e-01	ci right 3.826127e-01	k: 1035312	n:2710000
KS ci ratio: 1.671324e-01	ci left: 1.859908e-04	ci right 2.202582e-04	k: 549	n:2710000
FAM5B   2710000 perm   3178 sec   (853 perm/sec)   p_kst 2.025830e-04   p_cons 3.820339e-01   p_joint 4.940959e-04

Joint ci ratio: 1.070199e-01	ci left: 4.666256e-04	ci right 5.197414e-04	k: 1340	n:2720000
Cons ci ratio: 3.022866e-03	ci left: 3.814714e-01	ci right 3.826266e-01	k: 1039173	n:2720000
KS ci ratio: 1.669807e-01	ci left: 1.856593e-04	ci right 2.198314e-04	k: 550	n:2720000
FAM5B   2720000 perm   3199 sec   (850 perm/sec)   p_kst 2.022059e-04   p_cons 3.820489e-01   p_joint 4.926471e-04

Joint ci ratio: 1.069004e-01	ci left: 4.659858e-04	ci right 5.189658e-04	k: 1343	n:2730000
Cons ci ratio: 3.017379e-03	ci left: 3.814639e-01	ci right 3.826170e-01	k: 1042970	n:2730000
KS ci ratio: 1.669807e-01	ci left: 1.849792e-04	ci right 2.190262e-04	k: 550	n:2730000
FAM5B   2730000 perm   3221 sec   (848 perm/sec)   p_kst 2.014652e-04   p_cons 3.820403e-01   p_joint 4.919414e-04

Joint ci ratio: 1.069403e-01	ci left: 4.639299e-04	ci right 5.166971e-04	k: 1342	n:2740000
Cons ci ratio: 3.011979e-03	ci left: 3.814476e-01	ci right 3.825986e-01	k: 1046743	n:2740000
KS ci ratio: 1.665280e-01	ci left: 1.853533e-04	ci right 2.193673e-04	k: 553	n:2740000
FAM5B   2740000 perm   3242 sec   (845 perm/sec)   p_kst 2.018248e-04   p_cons 3.820230e-01   p_joint 4.897810e-04

Joint ci ratio: 1.067814e-01	ci left: 4.636586e-04	ci right 5.163116e-04	k: 1346	n:2750000
Cons ci ratio: 3.006526e-03	ci left: 3.814442e-01	ci right 3.825931e-01	k: 1050551	n:2750000
KS ci ratio: 1.663779e-01	ci left: 1.850278e-04	ci right 2.189484e-04	k: 554	n:2750000
FAM5B   2750000 perm   3263 sec   (843 perm/sec)   p_kst 2.014545e-04   p_cons 3.820185e-01   p_joint 4.894545e-04

Joint ci ratio: 1.066628e-01	ci left: 4.630366e-04	ci right 5.155569e-04	k: 1349	n:2760000
Cons ci ratio: 3.001144e-03	ci left: 3.814343e-01	ci right 3.825811e-01	k: 1054341	n:2760000
KS ci ratio: 1.662283e-01	ci left: 1.847046e-04	ci right 2.185325e-04	k: 555	n:2760000
FAM5B   2760000 perm   3285 sec   (840 perm/sec)   p_kst 2.010870e-04   p_cons 3.820076e-01   p_joint 4.887681e-04

Joint ci ratio: 1.065445e-01	ci left: 4.624191e-04	ci right 5.148076e-04	k: 1352	n:2770000
Cons ci ratio: 2.995903e-03	ci left: 3.814068e-01	ci right 3.825515e-01	k: 1058082	n:2770000
KS ci ratio: 1.662283e-01	ci left: 1.840378e-04	ci right 2.177436e-04	k: 555	n:2770000
FAM5B   2770000 perm   3307 sec   (838 perm/sec)   p_kst 2.003610e-04   p_cons 3.819791e-01   p_joint 4.880866e-04

Joint ci ratio: 1.064266e-01	ci left: 4.618061e-04	ci right 5.140636e-04	k: 1355	n:2780000
Cons ci ratio: 2.990349e-03	ci left: 3.814331e-01	ci right 3.825758e-01	k: 1061972	n:2780000
KS ci ratio: 1.660791e-01	ci left: 1.837205e-04	ci right 2.173350e-04	k: 556	n:2780000
FAM5B   2780000 perm   3329 sec   (835 perm/sec)   p_kst 2.000000e-04   p_cons 3.820043e-01   p_joint 4.874101e-04

Joint ci ratio: 1.061919e-01	ci left: 4.622443e-04	ci right 5.144288e-04	k: 1361	n:2790000
Cons ci ratio: 2.984954e-03	ci left: 3.814391e-01	ci right 3.825798e-01	k: 1065806	n:2790000
KS ci ratio: 1.656336e-01	ci left: 1.840927e-04	ci right 2.176759e-04	k: 559	n:2790000
FAM5B   2790000 perm   3351 sec   (833 perm/sec)   p_kst 2.003584e-04   p_cons 3.820093e-01   p_joint 4.878136e-04

Joint ci ratio: 1.061141e-01	ci left: 4.612887e-04	ci right 5.133248e-04	k: 1363	n:2800000
Cons ci ratio: 2.979820e-03	ci left: 3.814083e-01	ci right 3.825469e-01	k: 1069537	n:2800000
KS ci ratio: 1.654859e-01	ci left: 1.837776e-04	ci right 2.172704e-04	k: 560	n:2800000
FAM5B   2800000 perm   3373 sec   (830 perm/sec)   p_kst 2.000000e-04   p_cons 3.819775e-01   p_joint 4.867857e-04

Joint ci ratio: 1.063093e-01	ci left: 4.579150e-04	ci right 5.096715e-04	k: 1358	n:2810000
Cons ci ratio: 2.974443e-03	ci left: 3.814205e-01	ci right 3.825570e-01	k: 1073388	n:2810000
KS ci ratio: 1.654860e-01	ci left: 1.831235e-04	ci right 2.164972e-04	k: 560	n:2810000
FAM5B   2810000 perm   3395 sec   (828 perm/sec)   p_kst 1.992883e-04   p_cons 3.819886e-01   p_joint 4.832740e-04

Joint ci ratio: 1.061143e-01	ci left: 4.580171e-04	ci right 5.096843e-04	k: 1363	n:2820000
Cons ci ratio: 2.969122e-03	ci left: 3.814282e-01	ci right 3.825628e-01	k: 1077227	n:2820000
KS ci ratio: 1.650452e-01	ci left: 1.834940e-04	ci right 2.168373e-04	k: 563	n:2820000
FAM5B   2820000 perm   3417 sec   (825 perm/sec)   p_kst 1.996454e-04   p_cons 3.819954e-01   p_joint 4.833333e-04

Joint ci ratio: 1.058816e-01	ci left: 4.584626e-04	ci right 5.100596e-04	k: 1369	n:2830000
Cons ci ratio: 2.963955e-03	ci left: 3.814158e-01	ci right 3.825484e-01	k: 1081009	n:2830000
KS ci ratio: 1.648991e-01	ci left: 1.831844e-04	ci right 2.164390e-04	k: 564	n:2830000
FAM5B   2830000 perm   3439 sec   (823 perm/sec)   p_kst 1.992933e-04   p_cons 3.819820e-01   p_joint 4.837456e-04

Joint ci ratio: 1.057659e-01	ci left: 4.578767e-04	ci right 5.093479e-04	k: 1372	n:2840000
Cons ci ratio: 2.958604e-03	ci left: 3.814373e-01	ci right 3.825678e-01	k: 1084887	n:2840000
KS ci ratio: 1.644631e-01	ci left: 1.835522e-04	ci right 2.167767e-04	k: 567	n:2840000
FAM5B   2840000 perm   3461 sec   (821 perm/sec)   p_kst 1.996479e-04   p_cons 3.820025e-01   p_joint 4.830986e-04

Joint ci ratio: 1.056506e-01	ci left: 4.572949e-04	ci right 5.086412e-04	k: 1375	n:2850000
Cons ci ratio: 2.953161e-03	ci left: 3.814779e-01	ci right 3.826065e-01	k: 1088820	n:2850000
KS ci ratio: 1.641743e-01	ci left: 1.835810e-04	ci right 2.167467e-04	k: 569	n:2850000
FAM5B   2850000 perm   3483 sec   (818 perm/sec)   p_kst 1.996491e-04   p_cons 3.820421e-01   p_joint 4.824561e-04

Joint ci ratio: 1.063881e-01	ci left: 4.492287e-04	ci right 5.000434e-04	k: 1356	n:2860000
Cons ci ratio: 2.948137e-03	ci left: 3.814561e-01	ci right 3.825826e-01	k: 1092575	n:2860000
KS ci ratio: 1.640305e-01	ci left: 1.832744e-04	ci right 2.163528e-04	k: 570	n:2860000
FAM5B   2860000 perm   3506 sec   (816 perm/sec)   p_kst 1.993007e-04   p_cons 3.820192e-01   p_joint 4.741259e-04

Joint ci ratio: 1.063098e-01	ci left: 4.483417e-04	ci right 4.990165e-04	k: 1358	n:2870000
Cons ci ratio: 2.943164e-03	ci left: 3.814302e-01	ci right 3.825548e-01	k: 1096318	n:2870000
KS ci ratio: 1.640305e-01	ci left: 1.826358e-04	ci right 2.155990e-04	k: 570	n:2870000
FAM5B   2870000 perm   3528 sec   (814 perm/sec)   p_kst 1.986063e-04   p_cons 3.819923e-01   p_joint 4.731707e-04

Joint ci ratio: 1.062317e-01	ci left: 4.474610e-04	ci right 4.979967e-04	k: 1360	n:2880000
Cons ci ratio: 2.938054e-03	ci left: 3.814305e-01	ci right 3.825531e-01	k: 1100136	n:2880000
KS ci ratio: 1.640306e-01	ci left: 1.820017e-04	ci right 2.148504e-04	k: 570	n:2880000
FAM5B   2880000 perm   3551 sec   (811 perm/sec)   p_kst 1.979167e-04   p_cons 3.819917e-01   p_joint 4.722222e-04

Joint ci ratio: 1.059983e-01	ci left: 4.479337e-04	ci right 4.984047e-04	k: 1366	n:2890000
Cons ci ratio: 2.932882e-03	ci left: 3.814450e-01	ci right 3.825657e-01	k: 1103995	n:2890000
KS ci ratio: 1.636014e-01	ci left: 1.823674e-04	ci right 2.151875e-04	k: 573	n:2890000
FAM5B   2890000 perm   3573 sec   (809 perm/sec)   p_kst 1.982699e-04   p_cons 3.820052e-01   p_joint 4.726644e-04

Joint ci ratio: 1.058050e-01	ci left: 4.480676e-04	ci right 4.984558e-04	k: 1371	n:2900000
Cons ci ratio: 2.927813e-03	ci left: 3.814473e-01	ci right 3.825661e-01	k: 1107819	n:2900000
KS ci ratio: 1.634591e-01	ci left: 1.820693e-04	ci right 2.148044e-04	k: 574	n:2900000
FAM5B   2900000 perm   3596 sec   (807 perm/sec)   p_kst 1.979310e-04   p_cons 3.820066e-01   p_joint 4.727586e-04

Joint ci ratio: 1.056895e-01	ci left: 4.475315e-04	ci right 4.978011e-04	k: 1374	n:2910000
Cons ci ratio: 2.922861e-03	ci left: 3.814348e-01	ci right 3.825517e-01	k: 1111600	n:2910000
KS ci ratio: 1.633171e-01	ci left: 1.817732e-04	ci right 2.144240e-04	k: 575	n:2910000
FAM5B   2910000 perm   3618 sec   (804 perm/sec)   p_kst 1.975945e-04   p_cons 3.819931e-01   p_joint 4.721649e-04

Joint ci ratio: 1.054597e-01	ci left: 4.479994e-04	ci right 4.982054e-04	k: 1380	n:2920000
Cons ci ratio: 2.917784e-03	ci left: 3.814468e-01	ci right 3.825617e-01	k: 1115452	n:2920000
KS ci ratio: 1.630343e-01	ci left: 1.818077e-04	ci right 2.144025e-04	k: 577	n:2920000
FAM5B   2920000 perm   3641 sec   (802 perm/sec)   p_kst 1.976027e-04   p_cons 3.820041e-01   p_joint 4.726027e-04

Joint ci ratio: 1.052693e-01	ci left: 4.481319e-04	ci right 4.982564e-04	k: 1385	n:2930000
Cons ci ratio: 2.913053e-03	ci left: 3.814068e-01	ci right 3.825198e-01	k: 1119152	n:2930000
KS ci ratio: 1.627530e-01	ci left: 1.818419e-04	ci right 2.143812e-04	k: 579	n:2930000
FAM5B   2930000 perm   3664 sec   (800 perm/sec)   p_kst 1.976109e-04   p_cons 3.819631e-01   p_joint 4.726962e-04

Joint ci ratio: 1.052694e-01	ci left: 4.466076e-04	ci right 4.965617e-04	k: 1385	n:2940000
Cons ci ratio: 2.908226e-03	ci left: 3.813864e-01	ci right 3.824975e-01	k: 1122909	n:2940000
KS ci ratio: 1.624731e-01	ci left: 1.818760e-04	ci right 2.143599e-04	k: 581	n:2940000
FAM5B   2940000 perm   3690 sec   (797 perm/sec)   p_kst 1.976190e-04   p_cons 3.819418e-01   p_joint 4.710884e-04

Joint ci ratio: 1.071419e-01	ci left: 4.292545e-04	ci right 4.781755e-04	k: 1337	n:2950000
Cons ci ratio: 2.903248e-03	ci left: 3.813947e-01	ci right 3.825039e-01	k: 1126750	n:2950000
KS ci ratio: 1.621947e-01	ci left: 1.819099e-04	ci right 2.143387e-04	k: 583	n:2950000
FAM5B   2950000 perm   3716 sec   (794 perm/sec)   p_kst 1.976271e-04   p_cons 3.819492e-01   p_joint 4.532203e-04

Joint ci ratio: 1.076666e-01	ci left: 4.235303e-04	ci right 4.720503e-04	k: 1324	n:2960000
Cons ci ratio: 2.898287e-03	ci left: 3.814042e-01	ci right 3.825116e-01	k: 1130595	n:2960000
KS ci ratio: 1.620560e-01	ci left: 1.816195e-04	ci right 2.139662e-04	k: 584	n:2960000
FAM5B   2960000 perm   3743 sec   (791 perm/sec)   p_kst 1.972973e-04   p_cons 3.819578e-01   p_joint 4.472973e-04

Joint ci ratio: 1.073027e-01	ci left: 4.250531e-04	ci right 4.735726e-04	k: 1333	n:2970000
Cons ci ratio: 2.893351e-03	ci left: 3.814137e-01	ci right 3.825192e-01	k: 1134440	n:2970000
KS ci ratio: 1.615047e-01	ci left: 1.823002e-04	ci right 2.146470e-04	k: 588	n:2970000
FAM5B   2970000 perm   3769 sec   (788 perm/sec)   p_kst 1.979798e-04   p_cons 3.819663e-01   p_joint 4.488215e-04

Joint ci ratio: 1.072224e-01	ci left: 4.242799e-04	ci right 4.726726e-04	k: 1335	n:2980000
Cons ci ratio: 2.888411e-03	ci left: 3.814278e-01	ci right 3.825315e-01	k: 1138299	n:2980000
KS ci ratio: 1.613678e-01	ci left: 1.820105e-04	ci right 2.142758e-04	k: 589	n:2980000
FAM5B   2980000 perm   3795 sec   (785 perm/sec)   p_kst 1.976510e-04   p_cons 3.819795e-01   p_joint 4.479866e-04

Joint ci ratio: 1.070622e-01	ci left: 4.241628e-04	ci right 4.724654e-04	k: 1339	n:2990000
Cons ci ratio: 2.883618e-03	ci left: 3.814221e-01	ci right 3.825239e-01	k: 1142099	n:2990000
KS ci ratio: 1.610950e-01	ci left: 1.820437e-04	ci right 2.142551e-04	k: 591	n:2990000
FAM5B   2990000 perm   3822 sec   (782 perm/sec)   p_kst 1.976589e-04   p_cons 3.819729e-01   p_joint 4.478261e-04

Joint ci ratio: 1.208951e-01	ci left: 3.291508e-04	ci right 3.718233e-04	k: 1050	n:3000000
Cons ci ratio: 2.878917e-03	ci left: 3.814051e-01	ci right 3.825051e-01	k: 1145865	n:3000000
KS ci ratio: 1.626132e-01	ci left: 1.779187e-04	ci right 2.097259e-04	k: 580	n:3000000
FAM5B   3000000 perm   3849 sec   (780 perm/sec)   p_kst 1.933333e-04   p_cons 3.819550e-01   p_joint 3.500000e-04

Joint ci ratio: 1.204375e-01	ci left: 3.306349e-04	ci right 3.733260e-04	k: 1058	n:3010000
Cons ci ratio: 2.873994e-03	ci left: 3.814285e-01	ci right 3.825266e-01	k: 1149752	n:3010000
KS ci ratio: 1.620563e-01	ci left: 1.786025e-04	ci right 2.104119e-04	k: 584	n:3010000
FAM5B   3010000 perm   3875 sec   (777 perm/sec)   p_kst 1.940199e-04   p_cons 3.819774e-01   p_joint 3.514950e-04

Joint ci ratio: 1.206085e-01	ci left: 3.285766e-04	ci right 3.710665e-04	k: 1055	n:3020000
Cons ci ratio: 2.869245e-03	ci left: 3.814271e-01	ci right 3.825234e-01	k: 1153565	n:3020000
KS ci ratio: 1.616423e-01	ci left: 1.789643e-04	ci right 2.107488e-04	k: 587	n:3020000
FAM5B   3020000 perm   3903 sec   (774 perm/sec)   p_kst 1.943709e-04   p_cons 3.819752e-01   p_joint 3.493377e-04

Joint ci ratio: 1.211840e-01	ci left: 3.242916e-04	ci right 3.664419e-04	k: 1045	n:3030000
Cons ci ratio: 2.864478e-03	ci left: 3.814327e-01	ci right 3.825272e-01	k: 1157399	n:3030000
KS ci ratio: 1.613681e-01	ci left: 1.790070e-04	ci right 2.107400e-04	k: 589	n:3030000
FAM5B   3030000 perm   3930 sec   (771 perm/sec)   p_kst 1.943894e-04   p_cons 3.819799e-01   p_joint 3.448845e-04

Joint ci ratio: 1.210106e-01	ci left: 3.241818e-04	ci right 3.662532e-04	k: 1048	n:3040000
Cons ci ratio: 2.859661e-03	ci left: 3.814505e-01	ci right 3.825432e-01	k: 1161270	n:3040000
KS ci ratio: 1.613682e-01	ci left: 1.784182e-04	ci right 2.100467e-04	k: 589	n:3040000
FAM5B   3040000 perm   3956 sec   (768 perm/sec)   p_kst 1.937500e-04   p_cons 3.819967e-01   p_joint 3.447368e-04

Joint ci ratio: 1.208954e-01	ci left: 3.237548e-04	ci right 3.657279e-04	k: 1050	n:3050000
Cons ci ratio: 2.855031e-03	ci left: 3.814412e-01	ci right 3.825321e-01	k: 1165059	n:3050000
KS ci ratio: 1.612316e-01	ci left: 1.781478e-04	ci right 2.096992e-04	k: 590	n:3050000
FAM5B   3050000 perm   3983 sec   (766 perm/sec)   p_kst 1.934426e-04   p_cons 3.819866e-01   p_joint 3.442623e-04

Joint ci ratio: 1.215334e-01	ci left: 3.192110e-04	ci right 3.608291e-04	k: 1039	n:3060000
Cons ci ratio: 2.850399e-03	ci left: 3.814360e-01	ci right 3.825251e-01	k: 1168860	n:3060000
KS ci ratio: 1.610954e-01	ci left: 1.778792e-04	ci right 2.093538e-04	k: 591	n:3060000
FAM5B   3060000 perm   4011 sec   (763 perm/sec)   p_kst 1.931373e-04   p_cons 3.819804e-01   p_joint 3.395425e-04

Joint ci ratio: 1.213003e-01	ci left: 3.194346e-04	ci right 3.609962e-04	k: 1043	n:3070000
Cons ci ratio: 2.845941e-03	ci left: 3.814056e-01	ci right 3.824930e-01	k: 1172584	n:3070000
KS ci ratio: 1.608240e-01	ci left: 1.779251e-04	ci right 2.093496e-04	k: 593	n:3070000
FAM5B   3070000 perm   4038 sec   (760 perm/sec)   p_kst 1.931596e-04   p_cons 3.819492e-01   p_joint 3.397394e-04

Joint ci ratio: 1.211264e-01	ci left: 3.193420e-04	ci right 3.608277e-04	k: 1046	n:3080000
Cons ci ratio: 2.841303e-03	ci left: 3.814090e-01	ci right 3.824945e-01	k: 1176411	n:3080000
KS ci ratio: 1.605539e-01	ci left: 1.779706e-04	ci right 2.093453e-04	k: 595	n:3080000
FAM5B   3080000 perm   4065 sec   (758 perm/sec)   p_kst 1.931818e-04   p_cons 3.819516e-01   p_joint 3.396104e-04

Joint ci ratio: 1.210109e-01	ci left: 3.189361e-04	ci right 3.603268e-04	k: 1048	n:3090000
Cons ci ratio: 2.836718e-03	ci left: 3.814071e-01	ci right 3.824909e-01	k: 1180222	n:3090000
KS ci ratio: 1.602852e-01	ci left: 1.780159e-04	ci right 2.093410e-04	k: 597	n:3090000
FAM5B   3090000 perm   4093 sec   (755 perm/sec)   p_kst 1.932039e-04   p_cons 3.819489e-01   p_joint 3.391586e-04

Joint ci ratio: 1.208957e-01	ci left: 3.185329e-04	ci right 3.598291e-04	k: 1050	n:3100000
Cons ci ratio: 2.832184e-03	ci left: 3.814004e-01	ci right 3.824824e-01	k: 1184018	n:3100000
KS ci ratio: 1.601514e-01	ci left: 1.777513e-04	ci right 2.090013e-04	k: 598	n:3100000
FAM5B   3100000 perm   4120 sec   (752 perm/sec)   p_kst 1.929032e-04   p_cons 3.819413e-01   p_joint 3.387097e-04

Joint ci ratio: 1.207809e-01	ci left: 3.181324e-04	ci right 3.593347e-04	k: 1052	n:3110000
Cons ci ratio: 2.827486e-03	ci left: 3.814249e-01	ci right 3.825052e-01	k: 1187911	n:3110000
KS ci ratio: 1.596192e-01	ci left: 1.784145e-04	ci right 2.096668e-04	k: 602	n:3110000
FAM5B   3110000 perm   4148 sec   (750 perm/sec)   p_kst 1.935691e-04   p_cons 3.819650e-01   p_joint 3.382637e-04

Joint ci ratio: 1.205521e-01	ci left: 3.183561e-04	ci right 3.595037e-04	k: 1056	n:3120000
Cons ci ratio: 2.822873e-03	ci left: 3.814387e-01	ci right 3.825173e-01	k: 1191771	n:3120000
KS ci ratio: 1.594871e-01	ci left: 1.781504e-04	ci right 2.093281e-04	k: 603	n:3120000
FAM5B   3120000 perm   4175 sec   (747 perm/sec)   p_kst 1.932692e-04   p_cons 3.819779e-01   p_joint 3.384615e-04

Joint ci ratio: 1.206093e-01	ci left: 3.170291e-04	ci right 3.580260e-04	k: 1055	n:3130000
Cons ci ratio: 2.818324e-03	ci left: 3.814457e-01	ci right 3.825226e-01	k: 1195610	n:3130000
KS ci ratio: 1.590924e-01	ci left: 1.785015e-04	ci right 2.096560e-04	k: 606	n:3130000
FAM5B   3130000 perm   4203 sec   (745 perm/sec)   p_kst 1.936102e-04   p_cons 3.819840e-01   p_joint 3.370607e-04

Joint ci ratio: 1.087406e-01	ci left: 3.911950e-04	ci right 4.364862e-04	k: 1298	n:3140000
Cons ci ratio: 2.813866e-03	ci left: 3.814409e-01	ci right 3.825160e-01	k: 1199412	n:3140000
KS ci ratio: 1.589616e-01	ci left: 1.782388e-04	ci right 2.093194e-04	k: 607	n:3140000
FAM5B   3140000 perm   4231 sec   (742 perm/sec)   p_kst 1.933121e-04   p_cons 3.819783e-01   p_joint 4.133758e-04

Joint ci ratio: 1.093316e-01	ci left: 3.856298e-04	ci right 4.305350e-04	k: 1284	n:3150000
Cons ci ratio: 2.809381e-03	ci left: 3.814443e-01	ci right 3.825178e-01	k: 1203240	n:3150000
KS ci ratio: 1.587008e-01	ci left: 1.782826e-04	ci right 2.093150e-04	k: 609	n:3150000
FAM5B   3150000 perm   4259 sec   (740 perm/sec)   p_kst 1.933333e-04   p_cons 3.819810e-01   p_joint 4.076190e-04

Joint ci ratio: 1.090350e-01	ci left: 3.865641e-04	ci right 4.314482e-04	k: 1291	n:3160000
Cons ci ratio: 2.804804e-03	ci left: 3.814668e-01	ci right 3.825385e-01	k: 1207128	n:3160000
KS ci ratio: 1.583119e-01	ci left: 1.786302e-04	ci right 2.096396e-04	k: 612	n:3160000
FAM5B   3160000 perm   4287 sec   (737 perm/sec)   p_kst 1.936709e-04   p_cons 3.820025e-01   p_joint 4.085443e-04

Joint ci ratio: 1.089507e-01	ci left: 3.859584e-04	ci right 4.307353e-04	k: 1293	n:3170000
Cons ci ratio: 2.800249e-03	ci left: 3.814891e-01	ci right 3.825591e-01	k: 1211016	n:3170000
KS ci ratio: 1.580543e-01	ci left: 1.786726e-04	ci right 2.096342e-04	k: 614	n:3170000
FAM5B   3170000 perm   4316 sec   (735 perm/sec)   p_kst 1.936909e-04   p_cons 3.820240e-01   p_joint 4.078864e-04

Joint ci ratio: 1.087827e-01	ci left: 3.859683e-04	ci right 4.306729e-04	k: 1297	n:3180000
Cons ci ratio: 2.795864e-03	ci left: 3.814864e-01	ci right 3.825547e-01	k: 1214825	n:3180000
KS ci ratio: 1.580543e-01	ci left: 1.781107e-04	ci right 2.089750e-04	k: 614	n:3180000
FAM5B   3180000 perm   4344 sec   (732 perm/sec)   p_kst 1.930818e-04   p_cons 3.820204e-01   p_joint 4.078616e-04

Joint ci ratio: 1.085738e-01	ci left: 3.862832e-04	ci right 4.309328e-04	k: 1302	n:3190000
Cons ci ratio: 2.791693e-03	ci left: 3.814508e-01	ci right 3.825175e-01	k: 1218529	n:3190000
KS ci ratio: 1.576702e-01	ci left: 1.784557e-04	ci right 2.092974e-04	k: 617	n:3190000
FAM5B   3190000 perm   4372 sec   (730 perm/sec)   p_kst 1.934169e-04   p_cons 3.819840e-01   p_joint 4.081505e-04

Joint ci ratio: 1.084491e-01	ci left: 3.859881e-04	ci right 4.305491e-04	k: 1305	n:3200000
Cons ci ratio: 2.787370e-03	ci left: 3.814445e-01	ci right 3.825095e-01	k: 1222326	n:3200000
KS ci ratio: 1.575428e-01	ci left: 1.781982e-04	ci right 2.089682e-04	k: 618	n:3200000
FAM5B   3200000 perm   4401 sec   (727 perm/sec)   p_kst 1.931250e-04   p_cons 3.819769e-01   p_joint 4.078125e-04

Joint ci ratio: 1.090776e-01	ci left: 3.802398e-04	ci right 4.244079e-04	k: 1290	n:3210000
Cons ci ratio: 2.782975e-03	ci left: 3.814538e-01	ci right 3.825171e-01	k: 1226173	n:3210000
KS ci ratio: 1.571624e-01	ci left: 1.785408e-04	ci right 2.092885e-04	k: 621	n:3210000
FAM5B   3210000 perm   4429 sec   (725 perm/sec)   p_kst 1.934579e-04   p_cons 3.819854e-01   p_joint 4.018692e-04

Joint ci ratio: 1.105436e-01	ci left: 3.687898e-04	ci right 4.122411e-04	k: 1256	n:3220000
Cons ci ratio: 2.778778e-03	ci left: 3.814329e-01	ci right 3.824946e-01	k: 1229923	n:3220000
KS ci ratio: 1.570363e-01	ci left: 1.782847e-04	ci right 2.089613e-04	k: 622	n:3220000
FAM5B   3220000 perm   4458 sec   (722 perm/sec)   p_kst 1.931677e-04   p_cons 3.819637e-01   p_joint 3.900621e-04

Joint ci ratio: 1.103244e-01	ci left: 3.691533e-04	ci right 4.125556e-04	k: 1261	n:3230000
Cons ci ratio: 2.774407e-03	ci left: 3.814450e-01	ci right 3.825051e-01	k: 1233779	n:3230000
KS ci ratio: 1.567848e-01	ci left: 1.783276e-04	ci right 2.089579e-04	k: 624	n:3230000
FAM5B   3230000 perm   4487 sec   (720 perm/sec)   p_kst 1.931889e-04   p_cons 3.819749e-01   p_joint 3.904025e-04

Joint ci ratio: 1.101935e-01	ci left: 3.689143e-04	ci right 4.122337e-04	k: 1264	n:3240000
Cons ci ratio: 2.770259e-03	ci left: 3.814225e-01	ci right 3.824808e-01	k: 1237523	n:3240000
KS ci ratio: 1.567849e-01	ci left: 1.777772e-04	ci right 2.083130e-04	k: 624	n:3240000
FAM5B   3240000 perm   4515 sec   (718 perm/sec)   p_kst 1.925926e-04   p_cons 3.819515e-01   p_joint 3.901235e-04

Joint ci ratio: 1.100197e-01	ci left: 3.689760e-04	ci right 4.122299e-04	k: 1268	n:3250000
Cons ci ratio: 2.766026e-03	ci left: 3.814179e-01	ci right 3.824746e-01	k: 1241325	n:3250000
KS ci ratio: 1.566596e-01	ci left: 1.775258e-04	ci right 2.079917e-04	k: 625	n:3250000
FAM5B   3250000 perm   4541 sec   (716 perm/sec)   p_kst 1.923077e-04   p_cons 3.819462e-01   p_joint 3.901538e-04

Joint ci ratio: 1.098899e-01	ci left: 3.687391e-04	ci right 4.119110e-04	k: 1271	n:3260000
Cons ci ratio: 2.761817e-03	ci left: 3.814124e-01	ci right 3.824675e-01	k: 1245124	n:3260000
KS ci ratio: 1.564099e-01	ci left: 1.775708e-04	ci right 2.079912e-04	k: 627	n:3260000
FAM5B   3260000 perm   4566 sec   (714 perm/sec)   p_kst 1.923313e-04   p_cons 3.819399e-01   p_joint 3.898773e-04

Joint ci ratio: 1.097605e-01	ci left: 3.685037e-04	ci right 4.115939e-04	k: 1274	n:3270000
Cons ci ratio: 2.757704e-03	ci left: 3.813938e-01	ci right 3.824473e-01	k: 1248880	n:3270000
KS ci ratio: 1.561615e-01	ci left: 1.776154e-04	ci right 2.079907e-04	k: 629	n:3270000
FAM5B   3270000 perm   4591 sec   (712 perm/sec)   p_kst 1.923547e-04   p_cons 3.819205e-01   p_joint 3.896024e-04

Joint ci ratio: 1.095459e-01	ci left: 3.688628e-04	ci right 4.119053e-04	k: 1279	n:3280000
Cons ci ratio: 2.753533e-03	ci left: 3.813885e-01	ci right 3.824404e-01	k: 1252679	n:3280000
KS ci ratio: 1.559142e-01	ci left: 1.776599e-04	ci right 2.079901e-04	k: 631	n:3280000
FAM5B   3280000 perm   4616 sec   (711 perm/sec)   p_kst 1.923780e-04   p_cons 3.819143e-01   p_joint 3.899390e-04

Joint ci ratio: 1.095032e-01	ci left: 3.680373e-04	ci right 4.109656e-04	k: 1280	n:3290000
Cons ci ratio: 2.749322e-03	ci left: 3.813932e-01	ci right 3.824435e-01	k: 1256511	n:3290000
KS ci ratio: 1.559142e-01	ci left: 1.771199e-04	ci right 2.073579e-04	k: 631	n:3290000
FAM5B   3290000 perm   4641 sec   (709 perm/sec)   p_kst 1.917933e-04   p_cons 3.819182e-01   p_joint 3.890578e-04

Joint ci ratio: 1.093752e-01	ci left: 3.678062e-04	ci right 4.106542e-04	k: 1283	n:3300000
Cons ci ratio: 2.745206e-03	ci left: 3.813848e-01	ci right 3.824335e-01	k: 1260300	n:3300000
KS ci ratio: 1.559143e-01	ci left: 1.765831e-04	ci right 2.067296e-04	k: 631	n:3300000
FAM5B   3300000 perm   4667 sec   (707 perm/sec)   p_kst 1.912121e-04   p_cons 3.819091e-01   p_joint 3.887879e-04

Joint ci ratio: 1.092053e-01	ci left: 3.678704e-04	ci right 4.106550e-04	k: 1287	n:3310000
Cons ci ratio: 2.741113e-03	ci left: 3.813759e-01	ci right 3.824231e-01	k: 1264087	n:3310000
KS ci ratio: 1.555455e-01	ci left: 1.769207e-04	ci right 2.070467e-04	k: 634	n:3310000
FAM5B   3310000 perm   4693 sec   (705 perm/sec)   p_kst 1.915408e-04   p_cons 3.818994e-01   p_joint 3.888218e-04

Joint ci ratio: 1.091629e-01	ci left: 3.670554e-04	ci right 4.097275e-04	k: 1288	n:3320000
Cons ci ratio: 2.736985e-03	ci left: 3.813761e-01	ci right 3.824217e-01	k: 1267904	n:3320000
KS ci ratio: 1.554232e-01	ci left: 1.766773e-04	ci right 2.067359e-04	k: 635	n:3320000
FAM5B   3320000 perm   4718 sec   (704 perm/sec)   p_kst 1.912651e-04   p_cons 3.818988e-01   p_joint 3.879518e-04

Joint ci ratio: 1.089518e-01	ci left: 3.674137e-04	ci right 4.100396e-04	k: 1293	n:3330000
Cons ci ratio: 2.733017e-03	ci left: 3.813520e-01	ci right 3.823960e-01	k: 1271640	n:3330000
KS ci ratio: 1.550579e-01	ci left: 1.770126e-04	ci right 2.070510e-04	k: 638	n:3330000
FAM5B   3330000 perm   4744 sec   (702 perm/sec)   p_kst 1.915916e-04   p_cons 3.818739e-01   p_joint 3.882883e-04

Joint ci ratio: 1.088677e-01	ci left: 3.668961e-04	ci right 4.094270e-04	k: 1295	n:3340000
Cons ci ratio: 2.728946e-03	ci left: 3.813487e-01	ci right 3.823911e-01	k: 1275445	n:3340000
KS ci ratio: 1.549367e-01	ci left: 1.767704e-04	ci right 2.067421e-04	k: 639	n:3340000
FAM5B   3340000 perm   4770 sec   (700 perm/sec)   p_kst 1.913174e-04   p_cons 3.818698e-01   p_joint 3.877246e-04

Joint ci ratio: 1.085749e-01	ci left: 3.678336e-04	ci right 4.103512e-04	k: 1302	n:3350000
Cons ci ratio: 2.724931e-03	ci left: 3.813388e-01	ci right 3.823796e-01	k: 1279228	n:3350000
KS ci ratio: 1.546952e-01	ci left: 1.768166e-04	ci right 2.067451e-04	k: 641	n:3350000
FAM5B   3350000 perm   4796 sec   (699 perm/sec)   p_kst 1.913433e-04   p_cons 3.818591e-01   p_joint 3.886567e-04

Joint ci ratio: 1.082430e-01	ci left: 3.690553e-04	ci right 4.115754e-04	k: 1310	n:3360000
Cons ci ratio: 2.720991e-03	ci left: 3.813192e-01	ci right 3.823584e-01	k: 1282978	n:3360000
KS ci ratio: 1.542155e-01	ci left: 1.774349e-04	ci right 2.073662e-04	k: 645	n:3360000
FAM5B   3360000 perm   4821 sec   (697 perm/sec)   p_kst 1.919643e-04   p_cons 3.818387e-01   p_joint 3.898810e-04

Joint ci ratio: 1.080783e-01	ci left: 3.691150e-04	ci right 4.115731e-04	k: 1314	n:3370000
Cons ci ratio: 2.716926e-03	ci left: 3.813243e-01	ci right 3.823620e-01	k: 1286811	n:3370000
KS ci ratio: 1.539773e-01	ci left: 1.774789e-04	ci right 2.073672e-04	k: 647	n:3370000
FAM5B   3370000 perm   4847 sec   (695 perm/sec)   p_kst 1.919881e-04   p_cons 3.818430e-01   p_joint 3.899110e-04

Joint ci ratio: 1.079143e-01	ci left: 3.691744e-04	ci right 4.115708e-04	k: 1318	n:3380000
Cons ci ratio: 2.713054e-03	ci left: 3.812989e-01	ci right 3.823350e-01	k: 1290541	n:3380000
KS ci ratio: 1.539774e-01	ci left: 1.769539e-04	ci right 2.067537e-04	k: 647	n:3380000
FAM5B   3380000 perm   4873 sec   (694 perm/sec)   p_kst 1.914201e-04   p_cons 3.818169e-01   p_joint 3.899408e-04

Joint ci ratio: 1.077510e-01	ci left: 3.692335e-04	ci right 4.115685e-04	k: 1322	n:3390000
Cons ci ratio: 2.709087e-03	ci left: 3.812931e-01	ci right 3.823277e-01	k: 1294337	n:3390000
KS ci ratio: 1.538587e-01	ci left: 1.767155e-04	ci right 2.064501e-04	k: 648	n:3390000
FAM5B   3390000 perm   4899 sec   (692 perm/sec)   p_kst 1.911504e-04   p_cons 3.818103e-01   p_joint 3.899705e-04

Joint ci ratio: 1.081196e-01	ci left: 3.655719e-04	ci right 4.076396e-04	k: 1313	n:3400000
Cons ci ratio: 2.705028e-03	ci left: 3.813065e-01	ci right 3.823396e-01	k: 1298198	n:3400000
KS ci ratio: 1.533867e-01	ci left: 1.773270e-04	ci right 2.070646e-04	k: 652	n:3400000
FAM5B   3400000 perm   4925 sec   (690 perm/sec)   p_kst 1.917647e-04   p_cons 3.818229e-01   p_joint 3.861765e-04

Joint ci ratio: 1.078327e-01	ci left: 3.664972e-04	ci right 4.085523e-04	k: 1320	n:3410000
Cons ci ratio: 2.701083e-03	ci left: 3.813031e-01	ci right 3.823347e-01	k: 1302002	n:3410000
KS ci ratio: 1.528027e-01	ci left: 1.782171e-04	ci right 2.079798e-04	k: 657	n:3410000
FAM5B   3410000 perm   4951 sec   (689 perm/sec)   p_kst 1.926686e-04   p_cons 3.818188e-01   p_joint 3.870968e-04

Joint ci ratio: 1.077105e-01	ci left: 3.662791e-04	ci right 4.082586e-04	k: 1323	n:3420000
Cons ci ratio: 2.697063e-03	ci left: 3.813158e-01	ci right 3.823458e-01	k: 1305861	n:3420000
KS ci ratio: 1.525710e-01	ci left: 1.782584e-04	ci right 2.079787e-04	k: 659	n:3420000
FAM5B   3420000 perm   4977 sec   (687 perm/sec)   p_kst 1.926901e-04   p_cons 3.818307e-01   p_joint 3.868421e-04

Joint ci ratio: 1.075481e-01	ci left: 3.663461e-04	ci right 4.082659e-04	k: 1327	n:3430000
Cons ci ratio: 2.693170e-03	ci left: 3.813091e-01	ci right 3.823377e-01	k: 1309654	n:3430000
KS ci ratio: 1.519963e-01	ci left: 1.791409e-04	ci right 2.088856e-04	k: 664	n:3430000
FAM5B   3430000 perm   5003 sec   (686 perm/sec)   p_kst 1.935860e-04   p_cons 3.818233e-01   p_joint 3.868805e-04

Joint ci ratio: 1.073462e-01	ci left: 3.666955e-04	ci right 4.085716e-04	k: 1332	n:3440000
Cons ci ratio: 2.689196e-03	ci left: 3.813200e-01	ci right 3.823471e-01	k: 1313507	n:3440000
KS ci ratio: 1.518822e-01	ci left: 1.788998e-04	ci right 2.085801e-04	k: 665	n:3440000
FAM5B   3440000 perm   5029 sec   (684 perm/sec)   p_kst 1.933140e-04   p_cons 3.818334e-01   p_joint 3.872093e-04

Joint ci ratio: 1.072256e-01	ci left: 3.664789e-04	ci right 4.082802e-04	k: 1335	n:3450000
Cons ci ratio: 2.685319e-03	ci left: 3.813166e-01	ci right 3.823422e-01	k: 1317311	n:3450000
KS ci ratio: 1.515412e-01	ci left: 1.792178e-04	ci right 2.088781e-04	k: 668	n:3450000
FAM5B   3450000 perm   5055 sec   (682 perm/sec)   p_kst 1.936232e-04   p_cons 3.818293e-01   p_joint 3.869565e-04

Joint ci ratio: 1.074674e-01	ci left: 3.637321e-04	ci right 4.053196e-04	k: 1329	n:3460000
Cons ci ratio: 2.681456e-03	ci left: 3.813138e-01	ci right 3.823379e-01	k: 1321117	n:3460000
KS ci ratio: 1.514281e-01	ci left: 1.789779e-04	ci right 2.085744e-04	k: 669	n:3460000
FAM5B   3460000 perm   5082 sec   (681 perm/sec)   p_kst 1.933526e-04   p_cons 3.818257e-01   p_joint 3.841040e-04

Joint ci ratio: 1.073061e-01	ci left: 3.638057e-04	ci right 4.053352e-04	k: 1333	n:3470000
Cons ci ratio: 2.677648e-03	ci left: 3.813041e-01	ci right 3.823267e-01	k: 1324899	n:3470000
KS ci ratio: 1.514282e-01	ci left: 1.784621e-04	ci right 2.079733e-04	k: 669	n:3470000
FAM5B   3470000 perm   5108 sec   (679 perm/sec)   p_kst 1.927954e-04   p_cons 3.818153e-01   p_joint 3.841499e-04

Joint ci ratio: 1.071456e-01	ci left: 3.638788e-04	ci right 4.053507e-04	k: 1337	n:3480000
Cons ci ratio: 2.673730e-03	ci left: 3.813168e-01	ci right 3.823380e-01	k: 1328759	n:3480000
KS ci ratio: 1.514282e-01	ci left: 1.779493e-04	ci right 2.073757e-04	k: 669	n:3480000
FAM5B   3480000 perm   5135 sec   (678 perm/sec)   p_kst 1.922414e-04   p_cons 3.818273e-01   p_joint 3.841954e-04

Joint ci ratio: 1.069858e-01	ci left: 3.639517e-04	ci right 4.053660e-04	k: 1341	n:3490000
Cons ci ratio: 2.670021e-03	ci left: 3.812957e-01	ci right 3.823154e-01	k: 1332501	n:3490000
KS ci ratio: 1.513154e-01	ci left: 1.777151e-04	ci right 2.070789e-04	k: 670	n:3490000
FAM5B   3490000 perm   5161 sec   (676 perm/sec)   p_kst 1.919771e-04   p_cons 3.818054e-01   p_joint 3.842407e-04

Joint ci ratio: 1.070258e-01	ci left: 3.626337e-04	ci right 4.039145e-04	k: 1340	n:3500000
Cons ci ratio: 2.666255e-03	ci left: 3.812873e-01	ci right 3.823055e-01	k: 1336287	n:3500000
KS ci ratio: 1.510903e-01	ci left: 1.777571e-04	ci right 2.070802e-04	k: 672	n:3500000
FAM5B   3500000 perm   5188 sec   (675 perm/sec)   p_kst 1.920000e-04   p_cons 3.817963e-01   p_joint 3.828571e-04

Joint ci ratio: 1.068665e-01	ci left: 3.627097e-04	ci right 4.039338e-04	k: 1344	n:3510000
Cons ci ratio: 2.662573e-03	ci left: 3.812669e-01	ci right 3.822837e-01	k: 1340031	n:3510000
KS ci ratio: 1.507547e-01	ci left: 1.780731e-04	ci right 2.073772e-04	k: 675	n:3510000
FAM5B   3510000 perm   5215 sec   (673 perm/sec)   p_kst 1.923077e-04   p_cons 3.817752e-01   p_joint 3.829060e-04

Joint ci ratio: 1.065107e-01	ci left: 3.641679e-04	ci right 4.054113e-04	k: 1353	n:3520000
Cons ci ratio: 2.658681e-03	ci left: 3.812867e-01	ci right 3.823021e-01	k: 1343916	n:3520000
KS ci ratio: 1.503106e-01	ci left: 1.786608e-04	ci right 2.079672e-04	k: 679	n:3520000
FAM5B   3520000 perm   5241 sec   (672 perm/sec)   p_kst 1.928977e-04   p_cons 3.817943e-01   p_joint 3.843750e-04

Joint ci ratio: 1.064321e-01	ci left: 3.636877e-04	ci right 4.048445e-04	k: 1355	n:3530000
Cons ci ratio: 2.654811e-03	ci left: 3.813056e-01	ci right 3.823195e-01	k: 1347798	n:3530000
KS ci ratio: 1.503106e-01	ci left: 1.781547e-04	ci right 2.073781e-04	k: 679	n:3530000
FAM5B   3530000 perm   5268 sec   (670 perm/sec)   p_kst 1.923513e-04   p_cons 3.818125e-01   p_joint 3.838527e-04

Joint ci ratio: 1.028168e-01	ci left: 3.893449e-04	ci right 4.318182e-04	k: 1452	n:3540000
Cons ci ratio: 2.650943e-03	ci left: 3.813269e-01	ci right 3.823394e-01	k: 1351689	n:3540000
KS ci ratio: 1.502003e-01	ci left: 1.779233e-04	ci right 2.070854e-04	k: 680	n:3540000
FAM5B   3540000 perm   5295 sec   (669 perm/sec)   p_kst 1.920904e-04   p_cons 3.818331e-01   p_joint 4.101695e-04

Joint ci ratio: 1.026756e-01	ci left: 3.893460e-04	ci right 4.317575e-04	k: 1456	n:3550000
Cons ci ratio: 2.647292e-03	ci left: 3.813123e-01	ci right 3.823234e-01	k: 1355453	n:3550000
KS ci ratio: 1.500901e-01	ci left: 1.776932e-04	ci right 2.067943e-04	k: 681	n:3550000
FAM5B   3550000 perm   5322 sec   (667 perm/sec)   p_kst 1.918310e-04   p_cons 3.818177e-01   p_joint 4.101408e-04

Joint ci ratio: 1.024998e-01	ci left: 3.896208e-04	ci right 4.319852e-04	k: 1461	n:3560000
Cons ci ratio: 2.643646e-03	ci left: 3.812998e-01	ci right 3.823094e-01	k: 1359224	n:3560000
KS ci ratio: 1.498705e-01	ci left: 1.777348e-04	ci right 2.067963e-04	k: 683	n:3560000
FAM5B   3560000 perm   5349 sec   (666 perm/sec)   p_kst 1.918539e-04   p_cons 3.818045e-01   p_joint 4.103933e-04

Joint ci ratio: 1.023599e-01	ci left: 3.896212e-04	ci right 4.319243e-04	k: 1465	n:3570000
Cons ci ratio: 2.640039e-03	ci left: 3.812828e-01	ci right 3.822910e-01	k: 1362979	n:3570000
KS ci ratio: 1.498706e-01	ci left: 1.772369e-04	ci right 2.062170e-04	k: 683	n:3570000
FAM5B   3570000 perm   5376 sec   (664 perm/sec)   p_kst 1.913165e-04   p_cons 3.817868e-01   p_joint 4.103641e-04

Joint ci ratio: 1.022553e-01	ci left: 3.893494e-04	ci right 4.315773e-04	k: 1468	n:3580000
Cons ci ratio: 2.636305e-03	ci left: 3.812914e-01	ci right 3.822982e-01	k: 1366825	n:3580000
KS ci ratio: 1.497612e-01	ci left: 1.770107e-04	ci right 2.059308e-04	k: 684	n:3580000
FAM5B   3580000 perm   5404 sec   (663 perm/sec)   p_kst 1.910615e-04   p_cons 3.817947e-01   p_joint 4.100559e-04

Joint ci ratio: 1.021858e-01	ci left: 3.888077e-04	ci right 4.309464e-04	k: 1470	n:3590000
Cons ci ratio: 2.632681e-03	ci left: 3.812832e-01	ci right 3.822886e-01	k: 1370611	n:3590000
KS ci ratio: 1.496520e-01	ci left: 1.767857e-04	ci right 2.056461e-04	k: 685	n:3590000
FAM5B   3590000 perm   5431 sec   (661 perm/sec)   p_kst 1.908078e-04   p_cons 3.817858e-01   p_joint 4.094708e-04

Joint ci ratio: 1.020472e-01	ci left: 3.888104e-04	ci right 4.308888e-04	k: 1474	n:3600000
Cons ci ratio: 2.628929e-03	ci left: 3.813006e-01	ci right 3.823046e-01	k: 1374489	n:3600000
KS ci ratio: 1.494343e-01	ci left: 1.768294e-04	ci right 2.056512e-04	k: 687	n:3600000
FAM5B   3600000 perm   5459 sec   (659 perm/sec)   p_kst 1.908333e-04   p_cons 3.818025e-01   p_joint 4.094444e-04

Joint ci ratio: 1.021512e-01	ci left: 3.869236e-04	ci right 4.288430e-04	k: 1471	n:3610000
Cons ci ratio: 2.625285e-03	ci left: 3.813013e-01	ci right 3.823039e-01	k: 1378307	n:3610000
KS ci ratio: 1.492176e-01	ci left: 1.768729e-04	ci right 2.056562e-04	k: 689	n:3610000
FAM5B   3610000 perm   5486 sec   (658 perm/sec)   p_kst 1.908587e-04   p_cons 3.818025e-01   p_joint 4.074792e-04

Joint ci ratio: 1.018403e-01	ci left: 3.882775e-04	ci right 4.302080e-04	k: 1480	n:3620000
Cons ci ratio: 2.621571e-03	ci left: 3.813174e-01	ci right 3.823187e-01	k: 1382181	n:3620000
KS ci ratio: 1.486798e-01	ci left: 1.777141e-04	ci right 2.065208e-04	k: 694	n:3620000
FAM5B   3620000 perm   5514 sec   (657 perm/sec)   p_kst 1.917127e-04   p_cons 3.818180e-01   p_joint 4.088398e-04

Joint ci ratio: 1.016688e-01	ci left: 3.885502e-04	ci right 4.304353e-04	k: 1485	n:3630000
Cons ci ratio: 2.617809e-03	ci left: 3.813448e-01	ci right 3.823446e-01	k: 1386096	n:3630000
KS ci ratio: 1.482537e-01	ci left: 1.782855e-04	ci right 2.070947e-04	k: 698	n:3630000
FAM5B   3630000 perm   5541 sec   (655 perm/sec)   p_kst 1.922865e-04   p_cons 3.818446e-01   p_joint 4.090909e-04

Joint ci ratio: 1.014982e-01	ci left: 3.888215e-04	ci right 4.306612e-04	k: 1490	n:3640000
Cons ci ratio: 2.614129e-03	ci left: 3.813602e-01	ci right 3.823587e-01	k: 1389968	n:3640000
KS ci ratio: 1.481478e-01	ci left: 1.780602e-04	ci right 2.068107e-04	k: 699	n:3640000
FAM5B   3640000 perm   5569 sec   (654 perm/sec)   p_kst 1.920330e-04   p_cons 3.818593e-01   p_joint 4.093407e-04

Joint ci ratio: 1.013284e-01	ci left: 3.890914e-04	ci right 4.308859e-04	k: 1495	n:3650000
Cons ci ratio: 2.610630e-03	ci left: 3.813456e-01	ci right 3.823428e-01	k: 1393731	n:3650000
KS ci ratio: 1.478313e-01	ci left: 1.783639e-04	ci right 2.070964e-04	k: 702	n:3650000
FAM5B   3650000 perm   5597 sec   (652 perm/sec)   p_kst 1.923288e-04   p_cons 3.818441e-01   p_joint 4.095890e-04

Joint ci ratio: 1.026410e-01	ci left: 3.779104e-04	ci right 4.190616e-04	k: 1457	n:3660000
Cons ci ratio: 2.607047e-03	ci left: 3.813489e-01	ci right 3.823447e-01	k: 1397559	n:3660000
KS ci ratio: 1.475169e-01	ci left: 1.786659e-04	ci right 2.073805e-04	k: 705	n:3660000
FAM5B   3660000 perm   5625 sec   (651 perm/sec)   p_kst 1.926230e-04   p_cons 3.818467e-01   p_joint 3.980874e-04

Joint ci ratio: 1.025355e-01	ci left: 3.776772e-04	ci right 4.187581e-04	k: 1460	n:3670000
Cons ci ratio: 2.603574e-03	ci left: 3.813348e-01	ci right 3.823292e-01	k: 1401323	n:3670000
KS ci ratio: 1.474126e-01	ci left: 1.784415e-04	ci right 2.070979e-04	k: 706	n:3670000
FAM5B   3670000 perm   5653 sec   (649 perm/sec)   p_kst 1.923706e-04   p_cons 3.818319e-01   p_joint 3.978202e-04

Joint ci ratio: 1.023955e-01	ci left: 3.777100e-04	ci right 4.187350e-04	k: 1464	n:3680000
Cons ci ratio: 2.600046e-03	ci left: 3.813335e-01	ci right 3.823265e-01	k: 1405134	n:3680000
KS ci ratio: 1.472045e-01	ci left: 1.784801e-04	ci right 2.070987e-04	k: 708	n:3680000
FAM5B   3680000 perm   5681 sec   (648 perm/sec)   p_kst 1.923913e-04   p_cons 3.818299e-01   p_joint 3.978261e-04

Joint ci ratio: 1.022560e-01	ci left: 3.777427e-04	ci right 4.187119e-04	k: 1468	n:3690000
Cons ci ratio: 2.596516e-03	ci left: 3.813349e-01	ci right 3.823266e-01	k: 1408955	n:3690000
KS ci ratio: 1.468940e-01	ci left: 1.787795e-04	ci right 2.073803e-04	k: 711	n:3690000
FAM5B   3690000 perm   5709 sec   (646 perm/sec)   p_kst 1.926829e-04   p_cons 3.818306e-01   p_joint 3.978320e-04

Joint ci ratio: 1.021865e-01	ci left: 3.772484e-04	ci right 4.181347e-04	k: 1470	n:3700000
Cons ci ratio: 2.593069e-03	ci left: 3.813238e-01	ci right 3.823142e-01	k: 1412730	n:3700000
KS ci ratio: 1.468941e-01	ci left: 1.782963e-04	ci right 2.068198e-04	k: 711	n:3700000
FAM5B   3700000 perm   5738 sec   (645 perm/sec)   p_kst 1.921622e-04   p_cons 3.818189e-01   p_joint 3.972973e-04

Joint ci ratio: 1.020132e-01	ci left: 3.775449e-04	ci right 4.183897e-04	k: 1475	n:3710000
Cons ci ratio: 2.589509e-03	ci left: 3.813360e-01	ci right 3.823251e-01	k: 1416591	n:3710000
KS ci ratio: 1.468941e-01	ci left: 1.778157e-04	ci right 2.062624e-04	k: 711	n:3710000
FAM5B   3710000 perm   5766 sec   (643 perm/sec)   p_kst 1.916442e-04   p_cons 3.818305e-01   p_joint 3.975741e-04

Joint ci ratio: 1.018065e-01	ci left: 3.781018e-04	ci right 4.189190e-04	k: 1481	n:3720000
Cons ci ratio: 2.586138e-03	ci left: 3.813162e-01	ci right 3.823039e-01	k: 1420333	n:3720000
KS ci ratio: 1.463810e-01	ci left: 1.786325e-04	ci right 2.071013e-04	k: 716	n:3720000
FAM5B   3720000 perm   5794 sec   (642 perm/sec)   p_kst 1.924731e-04   p_cons 3.818099e-01   p_joint 3.981183e-04

Joint ci ratio: 1.017036e-01	ci left: 3.778719e-04	ci right 4.186206e-04	k: 1484	n:3730000
Cons ci ratio: 2.582724e-03	ci left: 3.813069e-01	ci right 3.822933e-01	k: 1424114	n:3730000
KS ci ratio: 1.461772e-01	ci left: 1.786702e-04	ci right 2.071018e-04	k: 718	n:3730000
FAM5B   3730000 perm   5822 sec   (641 perm/sec)   p_kst 1.924933e-04   p_cons 3.818000e-01   p_joint 3.978552e-04

Joint ci ratio: 1.016694e-01	ci left: 3.771222e-04	ci right 4.177755e-04	k: 1485	n:3740000
Cons ci ratio: 2.579298e-03	ci left: 3.813022e-01	ci right 3.822872e-01	k: 1427912	n:3740000
KS ci ratio: 1.461773e-01	ci left: 1.781924e-04	ci right 2.065481e-04	k: 718	n:3740000
FAM5B   3740000 perm   5851 sec   (639 perm/sec)   p_kst 1.919786e-04   p_cons 3.817947e-01   p_joint 3.970588e-04

Joint ci ratio: 1.015329e-01	ci left: 3.771561e-04	ci right 4.177552e-04	k: 1489	n:3750000
Cons ci ratio: 2.575931e-03	ci left: 3.812893e-01	ci right 3.822730e-01	k: 1431679	n:3750000
KS ci ratio: 1.461773e-01	ci left: 1.777173e-04	ci right 2.059973e-04	k: 718	n:3750000
FAM5B   3750000 perm   5879 sec   (638 perm/sec)   p_kst 1.914667e-04   p_cons 3.817811e-01   p_joint 3.970667e-04

Joint ci ratio: 1.012951e-01	ci left: 3.779675e-04	ci right 4.185531e-04	k: 1496	n:3760000
Cons ci ratio: 2.572356e-03	ci left: 3.813169e-01	ci right 3.822993e-01	k: 1435598	n:3760000
KS ci ratio: 1.459744e-01	ci left: 1.777571e-04	ci right 2.060008e-04	k: 720	n:3760000
FAM5B   3760000 perm   5908 sec   (636 perm/sec)   p_kst 1.914894e-04   p_cons 3.818080e-01   p_joint 3.978723e-04

Joint ci ratio: 1.011938e-01	ci left: 3.777405e-04	ci right 4.182587e-04	k: 1499	n:3770000
Cons ci ratio: 2.568908e-03	ci left: 3.813239e-01	ci right 3.823050e-01	k: 1439440	n:3770000
KS ci ratio: 1.457724e-01	ci left: 1.777967e-04	ci right 2.060042e-04	k: 722	n:3770000
FAM5B   3770000 perm   5936 sec   (635 perm/sec)   p_kst 1.915119e-04   p_cons 3.818143e-01   p_joint 3.976127e-04

Joint ci ratio: 1.021522e-01	ci left: 3.695221e-04	ci right 4.095566e-04	k: 1471	n:3780000
Cons ci ratio: 2.565636e-03	ci left: 3.813009e-01	ci right 3.822807e-01	k: 1443169	n:3780000
KS ci ratio: 1.455712e-01	ci left: 1.778362e-04	ci right 2.060076e-04	k: 724	n:3780000
FAM5B   3780000 perm   5965 sec   (634 perm/sec)   p_kst 1.915344e-04   p_cons 3.817907e-01   p_joint 3.891534e-04

Joint ci ratio: 1.020829e-01	ci left: 3.690613e-04	ci right 4.090172e-04	k: 1473	n:3790000
Cons ci ratio: 2.562147e-03	ci left: 3.813203e-01	ci right 3.822988e-01	k: 1447058	n:3790000
KS ci ratio: 1.454709e-01	ci left: 1.776212e-04	ci right 2.057375e-04	k: 725	n:3790000
FAM5B   3790000 perm   5994 sec   (632 perm/sec)   p_kst 1.912929e-04   p_cons 3.818095e-01   p_joint 3.886544e-04

Joint ci ratio: 1.019101e-01	ci left: 3.693723e-04	ci right 4.092902e-04	k: 1478	n:3800000
Cons ci ratio: 2.558714e-03	ci left: 3.813320e-01	ci right 3.823092e-01	k: 1450918	n:3800000
KS ci ratio: 1.452709e-01	ci left: 1.776609e-04	ci right 2.057415e-04	k: 727	n:3800000
FAM5B   3800000 perm   6023 sec   (631 perm/sec)   p_kst 1.913158e-04   p_cons 3.818205e-01   p_joint 3.889474e-04

Joint ci ratio: 1.018069e-01	ci left: 3.691702e-04	ci right 4.090234e-04	k: 1481	n:3810000
Cons ci ratio: 2.555298e-03	ci left: 3.813428e-01	ci right 3.823188e-01	k: 1454775	n:3810000
KS ci ratio: 1.449725e-01	ci left: 1.779535e-04	ci right 2.060175e-04	k: 730	n:3810000
FAM5B   3810000 perm   6051 sec   (630 perm/sec)   p_kst 1.916010e-04   p_cons 3.818307e-01   p_joint 3.887139e-04

Joint ci ratio: 1.017727e-01	ci left: 3.684589e-04	ci right 4.082211e-04	k: 1482	n:3820000
Cons ci ratio: 2.552038e-03	ci left: 3.813274e-01	ci right 3.823021e-01	k: 1458532	n:3820000
KS ci ratio: 1.448735e-01	ci left: 1.777399e-04	ci right 2.057494e-04	k: 731	n:3820000
FAM5B   3820000 perm   6080 sec   (628 perm/sec)   p_kst 1.913613e-04   p_cons 3.818147e-01   p_joint 3.879581e-04

Joint ci ratio: 1.016699e-01	ci left: 3.682602e-04	ci right 4.079584e-04	k: 1485	n:3830000
Cons ci ratio: 2.548551e-03	ci left: 3.813565e-01	ci right 3.823299e-01	k: 1462459	n:3830000
KS ci ratio: 1.445775e-01	ci left: 1.780307e-04	ci right 2.060239e-04	k: 734	n:3830000
FAM5B   3830000 perm   6110 sec   (627 perm/sec)   p_kst 1.916449e-04   p_cons 3.818431e-01   p_joint 3.877285e-04

Joint ci ratio: 1.015333e-01	ci left: 3.683164e-04	ci right 4.079642e-04	k: 1489	n:3840000
Cons ci ratio: 2.545190e-03	ci left: 3.813645e-01	ci right 3.823367e-01	k: 1466306	n:3840000
KS ci ratio: 1.442833e-01	ci left: 1.783201e-04	ci right 2.062968e-04	k: 737	n:3840000
FAM5B   3840000 perm   6139 sec   (626 perm/sec)   p_kst 1.919271e-04   p_cons 3.818505e-01   p_joint 3.877604e-04

Joint ci ratio: 1.012956e-01	ci left: 3.691318e-04	ci right 4.087688e-04	k: 1496	n:3850000
Cons ci ratio: 2.541895e-03	ci left: 3.813630e-01	ci right 3.823338e-01	k: 1470116	n:3850000
KS ci ratio: 1.437970e-01	ci left: 1.791089e-04	ci right 2.071064e-04	k: 742	n:3850000
FAM5B   3850000 perm   6168 sec   (624 perm/sec)   p_kst 1.927273e-04   p_cons 3.818483e-01   p_joint 3.885714e-04

Joint ci ratio: 1.011943e-01	ci left: 3.689330e-04	ci right 4.085067e-04	k: 1499	n:3860000
Cons ci ratio: 2.538601e-03	ci left: 3.813635e-01	ci right 3.823331e-01	k: 1473934	n:3860000
KS ci ratio: 1.437003e-01	ci left: 1.788946e-04	ci right 2.068383e-04	k: 743	n:3860000
FAM5B   3860000 perm   6197 sec   (623 perm/sec)   p_kst 1.924870e-04   p_cons 3.818482e-01   p_joint 3.883420e-04

Joint ci ratio: 1.010260e-01	ci left: 3.692390e-04	ci right 4.087758e-04	k: 1504	n:3870000
Cons ci ratio: 2.535404e-03	ci left: 3.813482e-01	ci right 3.823166e-01	k: 1477691	n:3870000
KS ci ratio: 1.437003e-01	ci left: 1.784324e-04	ci right 2.063038e-04	k: 743	n:3870000
FAM5B   3870000 perm   6227 sec   (622 perm/sec)   p_kst 1.919897e-04   p_cons 3.818323e-01   p_joint 3.886305e-04

Joint ci ratio: 1.008920e-01	ci left: 3.692923e-04	ci right 4.087792e-04	k: 1508	n:3880000
Cons ci ratio: 2.532161e-03	ci left: 3.813439e-01	ci right 3.823110e-01	k: 1481490	n:3880000
KS ci ratio: 1.435076e-01	ci left: 1.784694e-04	ci right 2.063061e-04	k: 745	n:3880000
FAM5B   3880000 perm   6257 sec   (620 perm/sec)   p_kst 1.920103e-04   p_cons 3.818273e-01   p_joint 3.886598e-04

Joint ci ratio: 1.008253e-01	ci left: 3.688441e-04	ci right 4.082554e-04	k: 1510	n:3890000
Cons ci ratio: 2.528964e-03	ci left: 3.813334e-01	ci right 3.822992e-01	k: 1485265	n:3890000
KS ci ratio: 1.434115e-01	ci left: 1.782585e-04	ci right 2.060420e-04	k: 746	n:3890000
FAM5B   3890000 perm   6287 sec   (619 perm/sec)   p_kst 1.917738e-04   p_cons 3.818162e-01   p_joint 3.881748e-04

Joint ci ratio: 1.023268e-01	ci left: 3.569028e-04	ci right 3.956402e-04	k: 1466	n:3900000
Cons ci ratio: 2.525732e-03	ci left: 3.813316e-01	ci right 3.822962e-01	k: 1489074	n:3900000
KS ci ratio: 1.433156e-01	ci left: 1.780486e-04	ci right 2.057793e-04	k: 747	n:3900000
FAM5B   3900000 perm   6316 sec   (617 perm/sec)   p_kst 1.915385e-04   p_cons 3.818138e-01   p_joint 3.758974e-04

Joint ci ratio: 1.021875e-01	ci left: 3.569868e-04	ci right 3.956775e-04	k: 1470	n:3910000
Cons ci ratio: 2.522584e-03	ci left: 3.813166e-01	ci right 3.822800e-01	k: 1492831	n:3910000
KS ci ratio: 1.432199e-01	ci left: 1.778398e-04	ci right 2.055179e-04	k: 748	n:3910000
FAM5B   3910000 perm   6346 sec   (616 perm/sec)   p_kst 1.913043e-04   p_cons 3.817982e-01   p_joint 3.759591e-04

Joint ci ratio: 1.020835e-01	ci left: 3.568219e-04	ci right 3.954530e-04	k: 1473	n:3920000
Cons ci ratio: 2.519322e-03	ci left: 3.813251e-01	ci right 3.822873e-01	k: 1496680	n:3920000
KS ci ratio: 1.432200e-01	ci left: 1.773862e-04	ci right 2.049937e-04	k: 748	n:3920000
FAM5B   3920000 perm   6377 sec   (615 perm/sec)   p_kst 1.908163e-04   p_cons 3.818061e-01   p_joint 3.757653e-04

Joint ci ratio: 1.019453e-01	ci left: 3.569058e-04	ci right 3.954905e-04	k: 1477	n:3930000
Cons ci ratio: 2.516032e-03	ci left: 3.813413e-01	ci right 3.823022e-01	k: 1500559	n:3930000
KS ci ratio: 1.428390e-01	ci left: 1.779162e-04	ci right 2.055262e-04	k: 752	n:3930000
FAM5B   3930000 perm   6406 sec   (613 perm/sec)   p_kst 1.913486e-04   p_cons 3.818216e-01   p_joint 3.758270e-04

Joint ci ratio: 1.019108e-01	ci left: 3.562473e-04	ci right 3.947470e-04	k: 1478	n:3940000
Cons ci ratio: 2.512816e-03	ci left: 3.813459e-01	ci right 3.823056e-01	k: 1504393	n:3940000
KS ci ratio: 1.428391e-01	ci left: 1.774646e-04	ci right 2.050046e-04	k: 752	n:3940000
FAM5B   3940000 perm   6436 sec   (612 perm/sec)   p_kst 1.908629e-04   p_cons 3.818256e-01   p_joint 3.751269e-04

Joint ci ratio: 1.017390e-01	ci left: 3.565790e-04	ci right 3.950457e-04	k: 1483	n:3950000
Cons ci ratio: 2.509617e-03	ci left: 3.813495e-01	ci right 3.823079e-01	k: 1508223	n:3950000
KS ci ratio: 1.427443e-01	ci left: 1.772595e-04	ci right 2.047478e-04	k: 753	n:3950000
FAM5B   3950000 perm   6467 sec   (611 perm/sec)   p_kst 1.906329e-04   p_cons 3.818286e-01   p_joint 3.754430e-04

Joint ci ratio: 1.015680e-01	ci left: 3.569091e-04	ci right 3.953428e-04	k: 1488	n:3960000
Cons ci ratio: 2.506348e-03	ci left: 3.813687e-01	ci right 3.823259e-01	k: 1512115	n:3960000
KS ci ratio: 1.427444e-01	ci left: 1.768118e-04	ci right 2.042308e-04	k: 753	n:3960000
FAM5B   3960000 perm   6497 sec   (610 perm/sec)   p_kst 1.901515e-04   p_cons 3.818472e-01   p_joint 3.757576e-04

Joint ci ratio: 1.015340e-01	ci left: 3.562555e-04	ci right 3.946053e-04	k: 1489	n:3970000
Cons ci ratio: 2.503299e-03	ci left: 3.813485e-01	ci right 3.823046e-01	k: 1515851	n:3970000
KS ci ratio: 1.427444e-01	ci left: 1.763665e-04	ci right 2.037163e-04	k: 753	n:3970000
FAM5B   3970000 perm   6528 sec   (608 perm/sec)   p_kst 1.896725e-04   p_cons 3.818264e-01   p_joint 3.750630e-04

Joint ci ratio: 1.013980e-01	ci left: 3.563399e-04	ci right 3.946443e-04	k: 1493	n:3980000
Cons ci ratio: 2.500204e-03	ci left: 3.813395e-01	ci right 3.822943e-01	k: 1519631	n:3980000
KS ci ratio: 1.422734e-01	ci left: 1.771348e-04	ci right 2.045055e-04	k: 758	n:3980000
FAM5B   3980000 perm   6559 sec   (607 perm/sec)   p_kst 1.904523e-04   p_cons 3.818168e-01   p_joint 3.751256e-04

Joint ci ratio: 1.032824e-01	ci left: 3.422593e-04	ci right 3.797753e-04	k: 1439	n:3990000
Cons ci ratio: 2.497059e-03	ci left: 3.813418e-01	ci right 3.822955e-01	k: 1523456	n:3990000
KS ci ratio: 1.419930e-01	ci left: 1.774160e-04	ci right 2.047716e-04	k: 761	n:3990000
FAM5B   3990000 perm   6589 sec   (606 perm/sec)   p_kst 1.907268e-04   p_cons 3.818185e-01   p_joint 3.606516e-04

Joint ci ratio: 1.032466e-01	ci left: 3.416472e-04	ci right 3.790823e-04	k: 1440	n:4000000
Cons ci ratio: 2.493779e-03	ci left: 3.813721e-01	ci right 3.823246e-01	k: 1527393	n:4000000
KS ci ratio: 1.419931e-01	ci left: 1.769725e-04	ci right 2.042597e-04	k: 761	n:4000000
FAM5B   4000000 perm   6619 sec   (604 perm/sec)   p_kst 1.902500e-04   p_cons 3.818483e-01   p_joint 3.600000e-04

Joint ci ratio: 1.031036e-01	ci left: 3.417669e-04	ci right 3.791602e-04	k: 1444	n:4010000
Cons ci ratio: 2.490553e-03	ci left: 3.813945e-01	ci right 3.823458e-01	k: 1531299	n:4010000
KS ci ratio: 1.418071e-01	ci left: 1.770122e-04	ci right 2.042667e-04	k: 763	n:4010000
FAM5B   4010000 perm   6650 sec   (603 perm/sec)   p_kst 1.902743e-04   p_cons 3.818701e-01   p_joint 3.600998e-04

Joint ci ratio: 1.034264e-01	ci left: 3.387358e-04	ci right 3.759205e-04	k: 1435	n:4020000
Cons ci ratio: 2.487438e-03	ci left: 3.813979e-01	ci right 3.823480e-01	k: 1535129	n:4020000
KS ci ratio: 1.416218e-01	ci left: 1.770517e-04	ci right 2.042737e-04	k: 765	n:4020000
FAM5B   4020000 perm   6681 sec   (602 perm/sec)   p_kst 1.902985e-04   p_cons 3.818729e-01   p_joint 3.569652e-04

Joint ci ratio: 1.033544e-01	ci left: 3.383787e-04	ci right 3.754968e-04	k: 1437	n:4030000
Cons ci ratio: 2.484437e-03	ci left: 3.813819e-01	ci right 3.823309e-01	k: 1538881	n:4030000
KS ci ratio: 1.414373e-01	ci left: 1.770911e-04	ci right 2.042807e-04	k: 767	n:4030000
FAM5B   4030000 perm   6713 sec   (600 perm/sec)   p_kst 1.903226e-04   p_cons 3.818563e-01   p_joint 3.565757e-04

Joint ci ratio: 1.032826e-01	ci left: 3.380233e-04	ci right 3.750752e-04	k: 1439	n:4040000
Cons ci ratio: 2.481425e-03	ci left: 3.813703e-01	ci right 3.823180e-01	k: 1542650	n:4040000
KS ci ratio: 1.411619e-01	ci left: 1.773691e-04	ci right 2.045439e-04	k: 770	n:4040000
FAM5B   4040000 perm   6744 sec   (599 perm/sec)   p_kst 1.905941e-04   p_cons 3.818441e-01   p_joint 3.561881e-04

Joint ci ratio: 1.031752e-01	ci left: 3.379103e-04	ci right 3.749089e-04	k: 1442	n:4050000
Cons ci ratio: 2.478324e-03	ci left: 3.813777e-01	ci right 3.823242e-01	k: 1546496	n:4050000
KS ci ratio: 1.409791e-01	ci left: 1.774075e-04	ci right 2.045501e-04	k: 772	n:4050000
FAM5B   4050000 perm   6775 sec   (598 perm/sec)   p_kst 1.906173e-04   p_cons 3.818509e-01   p_joint 3.560494e-04

Joint ci ratio: 1.029969e-01	ci left: 3.382778e-04	ci right 3.752488e-04	k: 1447	n:4060000
Cons ci ratio: 2.475311e-03	ci left: 3.813705e-01	ci right 3.823159e-01	k: 1550283	n:4060000
KS ci ratio: 1.407063e-01	ci left: 1.776835e-04	ci right 2.048112e-04	k: 775	n:4060000
FAM5B   4060000 perm   6806 sec   (597 perm/sec)   p_kst 1.908867e-04   p_cons 3.818431e-01   p_joint 3.564039e-04

Joint ci ratio: 1.028195e-01	ci left: 3.386436e-04	ci right 3.755869e-04	k: 1452	n:4070000
Cons ci ratio: 2.472249e-03	ci left: 3.813746e-01	ci right 3.823189e-01	k: 1554116	n:4070000
KS ci ratio: 1.405254e-01	ci left: 1.777210e-04	ci right 2.048166e-04	k: 777	n:4070000
FAM5B   4070000 perm   6837 sec   (595 perm/sec)   p_kst 1.909091e-04   p_cons 3.818467e-01   p_joint 3.567568e-04

Joint ci ratio: 1.029970e-01	ci left: 3.366196e-04	ci right 3.734093e-04	k: 1447	n:4080000
Cons ci ratio: 2.469263e-03	ci left: 3.813665e-01	ci right 3.823096e-01	k: 1557899	n:4080000
KS ci ratio: 1.402552e-01	ci left: 1.779949e-04	ci right 2.050757e-04	k: 780	n:4080000
FAM5B   4080000 perm   6867 sec   (594 perm/sec)   p_kst 1.911765e-04   p_cons 3.818380e-01   p_joint 3.546569e-04

Joint ci ratio: 1.028550e-01	ci left: 3.367494e-04	ci right 3.734995e-04	k: 1451	n:4090000
Cons ci ratio: 2.466301e-03	ci left: 3.813560e-01	ci right 3.822979e-01	k: 1561672	n:4090000
KS ci ratio: 1.399866e-01	ci left: 1.782675e-04	ci right 2.053335e-04	k: 783	n:4090000
FAM5B   4090000 perm   6898 sec   (593 perm/sec)   p_kst 1.914425e-04   p_cons 3.818269e-01   p_joint 3.547677e-04

Joint ci ratio: 1.027137e-01	ci left: 3.368786e-04	ci right 3.735892e-04	k: 1455	n:4100000
Cons ci ratio: 2.463257e-03	ci left: 3.813631e-01	ci right 3.823039e-01	k: 1565517	n:4100000
KS ci ratio: 1.399866e-01	ci left: 1.778327e-04	ci right 2.048327e-04	k: 783	n:4100000
FAM5B   4100000 perm   6929 sec   (592 perm/sec)   p_kst 1.909756e-04   p_cons 3.818334e-01   p_joint 3.548780e-04

Joint ci ratio: 1.025729e-01	ci left: 3.370072e-04	ci right 3.736784e-04	k: 1459	n:4110000
Cons ci ratio: 2.460217e-03	ci left: 3.813716e-01	ci right 3.823113e-01	k: 1569368	n:4110000
KS ci ratio: 1.396308e-01	ci left: 1.783392e-04	ci right 2.053416e-04	k: 787	n:4110000
FAM5B   4110000 perm   6961 sec   (590 perm/sec)   p_kst 1.914842e-04   p_cons 3.818414e-01   p_joint 3.549878e-04

Joint ci ratio: 1.033908e-01	ci left: 3.307504e-04	ci right 3.670453e-04	k: 1436	n:4120000
Cons ci ratio: 2.457264e-03	ci left: 3.813655e-01	ci right 3.823040e-01	k: 1573159	n:4120000
KS ci ratio: 1.394540e-01	ci left: 1.783748e-04	ci right 2.053456e-04	k: 789	n:4120000
FAM5B   4120000 perm   6993 sec   (589 perm/sec)   p_kst 1.915049e-04   p_cons 3.818347e-01   p_joint 3.485437e-04

Joint ci ratio: 1.033549e-01	ci left: 3.301854e-04	ci right 3.664049e-04	k: 1437	n:4130000
Cons ci ratio: 2.454284e-03	ci left: 3.813668e-01	ci right 3.823041e-01	k: 1576980	n:4130000
KS ci ratio: 1.394540e-01	ci left: 1.779429e-04	ci right 2.048484e-04	k: 789	n:4130000
FAM5B   4130000 perm   7024 sec   (588 perm/sec)   p_kst 1.910412e-04   p_cons 3.818354e-01   p_joint 3.479419e-04

Joint ci ratio: 1.038984e-01	ci left: 3.258585e-04	ci right 3.618029e-04	k: 1422	n:4140000
Cons ci ratio: 2.451312e-03	ci left: 3.813684e-01	ci right 3.823047e-01	k: 1580803	n:4140000
KS ci ratio: 1.392778e-01	ci left: 1.779793e-04	ci right 2.048535e-04	k: 791	n:4140000
FAM5B   4140000 perm   7055 sec   (587 perm/sec)   p_kst 1.910628e-04   p_cons 3.818365e-01   p_joint 3.434783e-04

Joint ci ratio: 1.037891e-01	ci left: 3.257774e-04	ci right 3.616727e-04	k: 1425	n:4150000
Cons ci ratio: 2.448399e-03	ci left: 3.813610e-01	ci right 3.822961e-01	k: 1584588	n:4150000
KS ci ratio: 1.391023e-01	ci left: 1.780156e-04	ci right 2.048586e-04	k: 793	n:4150000
FAM5B   4150000 perm   7086 sec   (586 perm/sec)   p_kst 1.910843e-04   p_cons 3.818284e-01   p_joint 3.433735e-04

Joint ci ratio: 1.036076e-01	ci left: 3.261651e-04	ci right 3.620364e-04	k: 1430	n:4160000
Cons ci ratio: 2.445437e-03	ci left: 3.813648e-01	ci right 3.822988e-01	k: 1588420	n:4160000
KS ci ratio: 1.387532e-01	ci left: 1.785158e-04	ci right 2.053610e-04	k: 797	n:4160000
FAM5B   4160000 perm   7118 sec   (584 perm/sec)   p_kst 1.915865e-04   p_cons 3.818317e-01   p_joint 3.437500e-04

Joint ci ratio: 1.035353e-01	ci left: 3.258501e-04	ci right 3.616602e-04	k: 1432	n:4170000
Cons ci ratio: 2.442452e-03	ci left: 3.813754e-01	ci right 3.823082e-01	k: 1592280	n:4170000
KS ci ratio: 1.386663e-01	ci left: 1.783192e-04	ci right 2.051167e-04	k: 798	n:4170000
FAM5B   4170000 perm   7150 sec   (583 perm/sec)   p_kst 1.913669e-04   p_cons 3.818417e-01   p_joint 3.434053e-04

Joint ci ratio: 1.034271e-01	ci left: 3.257697e-04	ci right 3.615313e-04	k: 1435	n:4180000
Cons ci ratio: 2.439581e-03	ci left: 3.813658e-01	ci right 3.822975e-01	k: 1596056	n:4180000
KS ci ratio: 1.384931e-01	ci left: 1.783545e-04	ci right 2.051210e-04	k: 800	n:4180000
FAM5B   4180000 perm   7182 sec   (582 perm/sec)   p_kst 1.913876e-04   p_cons 3.818316e-01   p_joint 3.433014e-04

Joint ci ratio: 1.033911e-01	ci left: 3.252247e-04	ci right 3.609133e-04	k: 1436	n:4190000
Cons ci ratio: 2.436649e-03	ci left: 3.813701e-01	ci right 3.823007e-01	k: 1599890	n:4190000
KS ci ratio: 1.384931e-01	ci left: 1.779288e-04	ci right 2.046315e-04	k: 800	n:4190000
FAM5B   4190000 perm   7214 sec   (581 perm/sec)   p_kst 1.909308e-04   p_cons 3.818353e-01   p_joint 3.427208e-04

Joint ci ratio: 1.033911e-01	ci left: 3.244503e-04	ci right 3.600540e-04	k: 1436	n:4200000
Cons ci ratio: 2.433706e-03	ci left: 3.813784e-01	ci right 3.823079e-01	k: 1603741	n:4200000
KS ci ratio: 1.384932e-01	ci left: 1.775052e-04	ci right 2.041443e-04	k: 800	n:4200000
FAM5B   4200000 perm   7246 sec   (580 perm/sec)   p_kst 1.904762e-04   p_cons 3.818431e-01   p_joint 3.419048e-04

Joint ci ratio: 1.032834e-01	ci left: 3.243738e-04	ci right 3.599297e-04	k: 1439	n:4210000
Cons ci ratio: 2.430928e-03	ci left: 3.813568e-01	ci right 3.822852e-01	k: 1607466	n:4210000
KS ci ratio: 1.383206e-01	ci left: 1.775422e-04	ci right 2.041509e-04	k: 802	n:4210000
FAM5B   4210000 perm   7278 sec   (578 perm/sec)   p_kst 1.904988e-04   p_cons 3.818209e-01   p_joint 3.418052e-04

Joint ci ratio: 9.217088e-02	ci left: 4.086853e-04	ci right 4.484035e-04	k: 1807	n:4220000
Cons ci ratio: 2.428026e-03	ci left: 3.813613e-01	ci right 3.822886e-01	k: 1611301	n:4220000
KS ci ratio: 1.382346e-01	ci left: 1.773502e-04	ci right 2.039123e-04	k: 803	n:4220000
FAM5B   4220000 perm   7310 sec   (577 perm/sec)   p_kst 1.902844e-04   p_cons 3.818249e-01   p_joint 4.281991e-04

Joint ci ratio: 9.206910e-02	ci left: 4.086430e-04	ci right 4.483108e-04	k: 1811	n:4230000
Cons ci ratio: 2.425165e-03	ci left: 3.813597e-01	ci right 3.822859e-01	k: 1615110	n:4230000
KS ci ratio: 1.381487e-01	ci left: 1.771592e-04	ci right 2.036748e-04	k: 804	n:4230000
FAM5B   4230000 perm   7343 sec   (576 perm/sec)   p_kst 1.900709e-04   p_cons 3.818227e-01   p_joint 4.281324e-04

Joint ci ratio: 9.250428e-02	ci left: 4.037623e-04	ci right 4.431516e-04	k: 1794	n:4240000
Cons ci ratio: 2.422241e-03	ci left: 3.813724e-01	ci right 3.822975e-01	k: 1618980	n:4240000
KS ci ratio: 1.379774e-01	ci left: 1.771968e-04	ci right 2.036824e-04	k: 806	n:4240000
FAM5B   4240000 perm   7375 sec   (575 perm/sec)   p_kst 1.900943e-04   p_cons 3.818349e-01   p_joint 4.231132e-04

Joint ci ratio: 9.237571e-02	ci left: 4.039615e-04	ci right 4.433126e-04	k: 1799	n:4250000
Cons ci ratio: 2.419336e-03	ci left: 3.813835e-01	ci right 3.823075e-01	k: 1622843	n:4250000
KS ci ratio: 1.376367e-01	ci left: 1.776886e-04	ci right 2.041767e-04	k: 810	n:4250000
FAM5B   4250000 perm   7407 sec   (574 perm/sec)   p_kst 1.905882e-04   p_cons 3.818454e-01   p_joint 4.232941e-04

Joint ci ratio: 9.229884e-02	ci left: 4.037012e-04	ci right 4.429924e-04	k: 1802	n:4260000
Cons ci ratio: 2.416454e-03	ci left: 3.813919e-01	ci right 3.823148e-01	k: 1626695	n:4260000
KS ci ratio: 1.375519e-01	ci left: 1.774981e-04	ci right 2.039403e-04	k: 811	n:4260000
FAM5B   4260000 perm   7439 sec   (573 perm/sec)   p_kst 1.903756e-04   p_cons 3.818533e-01   p_joint 4.230047e-04

Joint ci ratio: 9.227329e-02	ci left: 4.029846e-04	ci right 4.421946e-04	k: 1803	n:4270000
Cons ci ratio: 2.413609e-03	ci left: 3.813951e-01	ci right 3.823170e-01	k: 1630525	n:4270000
KS ci ratio: 1.375519e-01	ci left: 1.770824e-04	ci right 2.034627e-04	k: 811	n:4270000
FAM5B   4270000 perm   7471 sec   (572 perm/sec)   p_kst 1.899297e-04   p_cons 3.818560e-01   p_joint 4.222482e-04

Joint ci ratio: 9.219667e-02	ci left: 4.027278e-04	ci right 4.418785e-04	k: 1806	n:4280000
Cons ci ratio: 2.410809e-03	ci left: 3.813916e-01	ci right 3.823123e-01	k: 1634326	n:4280000
KS ci ratio: 1.374673e-01	ci left: 1.768943e-04	ci right 2.032290e-04	k: 812	n:4280000
FAM5B   4280000 perm   7503 sec   (570 perm/sec)   p_kst 1.897196e-04   p_cons 3.818519e-01   p_joint 4.219626e-04

Joint ci ratio: 9.237589e-02	ci left: 4.001949e-04	ci right 4.391792e-04	k: 1799	n:4290000
Cons ci ratio: 2.407965e-03	ci left: 3.813985e-01	ci right 3.823182e-01	k: 1638172	n:4290000
KS ci ratio: 1.374674e-01	ci left: 1.764819e-04	ci right 2.027552e-04	k: 812	n:4290000
FAM5B   4290000 perm   7536 sec   (569 perm/sec)   p_kst 1.892774e-04   p_cons 3.818583e-01   p_joint 4.193473e-04

Joint ci ratio: 9.222229e-02	ci left: 4.006274e-04	ci right 4.395854e-04	k: 1805	n:4300000
Cons ci ratio: 2.405170e-03	ci left: 3.813977e-01	ci right 3.823164e-01	k: 1641985	n:4300000
KS ci ratio: 1.372986e-01	ci left: 1.765206e-04	ci right 2.027648e-04	k: 814	n:4300000
FAM5B   4300000 perm   7568 sec   (568 perm/sec)   p_kst 1.893023e-04   p_cons 3.818570e-01   p_joint 4.197674e-04

Joint ci ratio: 9.204406e-02	ci left: 4.012846e-04	ci right 4.402270e-04	k: 1812	n:4310000
Cons ci ratio: 2.402307e-03	ci left: 3.814123e-01	ci right 3.823299e-01	k: 1645864	n:4310000
KS ci ratio: 1.371304e-01	ci left: 1.765592e-04	ci right 2.027743e-04	k: 816	n:4310000
FAM5B   4310000 perm   7600 sec   (567 perm/sec)   p_kst 1.893271e-04   p_cons 3.818710e-01   p_joint 4.204176e-04

Joint ci ratio: 9.199335e-02	ci left: 4.008080e-04	ci right 4.396815e-04	k: 1814	n:4320000
Cons ci ratio: 2.399554e-03	ci left: 3.814071e-01	ci right 3.823236e-01	k: 1649658	n:4320000
KS ci ratio: 1.370466e-01	ci left: 1.763740e-04	ci right 2.025443e-04	k: 817	n:4320000
FAM5B   4320000 perm   7632 sec   (566 perm/sec)   p_kst 1.891204e-04   p_cons 3.818653e-01   p_joint 4.199074e-04

Joint ci ratio: 9.273757e-02	ci left: 3.933395e-04	ci right 4.318141e-04	k: 1785	n:4330000
Cons ci ratio: 2.396866e-03	ci left: 3.813909e-01	ci right 3.823063e-01	k: 1653404	n:4330000
KS ci ratio: 1.370466e-01	ci left: 1.759667e-04	ci right 2.020766e-04	k: 817	n:4330000
FAM5B   4330000 perm   7666 sec   (565 perm/sec)   p_kst 1.886836e-04   p_cons 3.818485e-01   p_joint 4.122402e-04

Joint ci ratio: 9.263389e-02	ci left: 3.933335e-04	ci right 4.317621e-04	k: 1789	n:4340000
Cons ci ratio: 2.394111e-03	ci left: 3.813899e-01	ci right 3.823043e-01	k: 1657216	n:4340000
KS ci ratio: 1.370467e-01	ci left: 1.755612e-04	ci right 2.016110e-04	k: 817	n:4340000
FAM5B   4340000 perm   7699 sec   (564 perm/sec)   p_kst 1.882488e-04   p_cons 3.818470e-01   p_joint 4.122120e-04

Joint ci ratio: 9.289389e-02	ci left: 3.901837e-04	ci right 4.284174e-04	k: 1779	n:4350000
Cons ci ratio: 2.391377e-03	ci left: 3.813866e-01	ci right 3.823000e-01	k: 1661018	n:4350000
KS ci ratio: 1.367960e-01	ci left: 1.758237e-04	ci right 2.018607e-04	k: 820	n:4350000
FAM5B   4350000 perm   7731 sec   (563 perm/sec)   p_kst 1.885057e-04   p_cons 3.818432e-01   p_joint 4.089655e-04

Joint ci ratio: 9.278969e-02	ci left: 3.901849e-04	ci right 4.283736e-04	k: 1783	n:4360000
Cons ci ratio: 2.388631e-03	ci left: 3.813875e-01	ci right 3.822998e-01	k: 1664838	n:4360000
KS ci ratio: 1.366297e-01	ci left: 1.758634e-04	ci right 2.018722e-04	k: 822	n:4360000
FAM5B   4360000 perm   7764 sec   (562 perm/sec)   p_kst 1.885321e-04   p_cons 3.818436e-01   p_joint 4.089450e-04

Joint ci ratio: 9.271178e-02	ci left: 3.899626e-04	ci right 4.280957e-04	k: 1786	n:4370000
Cons ci ratio: 2.385866e-03	ci left: 3.813941e-01	ci right 3.823054e-01	k: 1668683	n:4370000
KS ci ratio: 1.364640e-01	ci left: 1.759030e-04	ci right 2.018835e-04	k: 824	n:4370000
FAM5B   4370000 perm   7797 sec   (560 perm/sec)   p_kst 1.885584e-04   p_cons 3.818497e-01   p_joint 4.086957e-04

Joint ci ratio: 9.260819e-02	ci left: 3.899644e-04	ci right 4.280527e-04	k: 1790	n:4380000
Cons ci ratio: 2.383069e-03	ci left: 3.814089e-01	ci right 3.823191e-01	k: 1672564	n:4380000
KS ci ratio: 1.363814e-01	ci left: 1.757220e-04	ci right 2.016587e-04	k: 825	n:4380000
FAM5B   4380000 perm   7830 sec   (559 perm/sec)   p_kst 1.883562e-04   p_cons 3.818639e-01   p_joint 4.086758e-04

Joint ci ratio: 9.237633e-02	ci left: 3.910788e-04	ci right 4.291752e-04	k: 1799	n:4390000
Cons ci ratio: 2.380221e-03	ci left: 3.814355e-01	ci right 3.823447e-01	k: 1676497	n:4390000
KS ci ratio: 1.358070e-01	ci left: 1.768619e-04	ci right 2.028481e-04	k: 832	n:4390000
FAM5B   4390000 perm   7864 sec   (558 perm/sec)   p_kst 1.895216e-04   p_cons 3.818900e-01   p_joint 4.097950e-04

Joint ci ratio: 9.312994e-02	ci left: 3.837519e-04	ci right 4.214561e-04	k: 1770	n:4400000
Cons ci ratio: 2.377468e-03	ci left: 3.814453e-01	ci right 3.823535e-01	k: 1680357	n:4400000
KS ci ratio: 1.354821e-01	ci left: 1.773382e-04	ci right 2.033270e-04	k: 836	n:4400000
FAM5B   4400000 perm   7896 sec   (557 perm/sec)   p_kst 1.900000e-04   p_cons 3.818993e-01   p_joint 4.022727e-04

Joint ci ratio: 9.305117e-02	ci left: 3.835461e-04	ci right 4.211965e-04	k: 1773	n:4410000
Cons ci ratio: 2.374696e-03	ci left: 3.814608e-01	ci right 3.823679e-01	k: 1684242	n:4410000
KS ci ratio: 1.354013e-01	ci left: 1.771552e-04	ci right 2.031004e-04	k: 837	n:4410000
FAM5B   4410000 perm   7930 sec   (556 perm/sec)   p_kst 1.897959e-04   p_cons 3.819143e-01   p_joint 4.020408e-04

Joint ci ratio: 9.292031e-02	ci left: 3.837833e-04	ci right 4.214011e-04	k: 1778	n:4420000
Cons ci ratio: 2.372018e-03	ci left: 3.814592e-01	ci right 3.823654e-01	k: 1688052	n:4420000
KS ci ratio: 1.350792e-01	ci left: 1.776287e-04	ci right 2.035764e-04	k: 841	n:4420000
FAM5B   4420000 perm   7963 sec   (555 perm/sec)   p_kst 1.902715e-04   p_cons 3.819122e-01   p_joint 4.022624e-04

Joint ci ratio: 9.286814e-02	ci left: 3.833579e-04	ci right 4.209118e-04	k: 1780	n:4430000
Cons ci ratio: 2.369387e-03	ci left: 3.814502e-01	ci right 3.823553e-01	k: 1691829	n:4430000
KS ci ratio: 1.349991e-01	ci left: 1.774459e-04	ci right 2.033503e-04	k: 842	n:4430000
FAM5B   4430000 perm   7997 sec   (554 perm/sec)   p_kst 1.900677e-04   p_cons 3.819027e-01   p_joint 4.018059e-04

Joint ci ratio: 9.268614e-02	ci left: 3.840345e-04	ci right 4.215770e-04	k: 1787	n:4440000
Cons ci ratio: 2.366675e-03	ci left: 3.814593e-01	ci right 3.823634e-01	k: 1695686	n:4440000
KS ci ratio: 1.346005e-01	ci left: 1.781344e-04	ci right 2.040563e-04	k: 847	n:4440000
FAM5B   4440000 perm   8030 sec   (553 perm/sec)   p_kst 1.907658e-04   p_cons 3.819113e-01   p_joint 4.024775e-04

Joint ci ratio: 9.297273e-02	ci left: 3.807570e-04	ci right 4.181004e-04	k: 1776	n:4450000
Cons ci ratio: 2.364002e-03	ci left: 3.814623e-01	ci right 3.823653e-01	k: 1699516	n:4450000
KS ci ratio: 1.344420e-01	ci left: 1.781684e-04	ci right 2.040623e-04	k: 849	n:4450000
FAM5B   4450000 perm   8064 sec   (552 perm/sec)   p_kst 1.907865e-04   p_cons 3.819137e-01   p_joint 3.991011e-04

Joint ci ratio: 9.292047e-02	ci left: 3.803413e-04	ci right 4.176218e-04	k: 1778	n:4460000
Cons ci ratio: 2.361412e-03	ci left: 3.814504e-01	ci right 3.823524e-01	k: 1703280	n:4460000
KS ci ratio: 1.343630e-01	ci left: 1.779856e-04	ci right 2.038366e-04	k: 850	n:4460000
FAM5B   4460000 perm   8098 sec   (551 perm/sec)   p_kst 1.905830e-04   p_cons 3.819013e-01   p_joint 3.986547e-04

Joint ci ratio: 9.279016e-02	ci left: 3.805830e-04	ci right 4.178320e-04	k: 1783	n:4470000
Cons ci ratio: 2.358881e-03	ci left: 3.814285e-01	ci right 3.823296e-01	k: 1706999	n:4470000
KS ci ratio: 1.341268e-01	ci left: 1.782360e-04	ci right 2.040742e-04	k: 853	n:4470000
FAM5B   4470000 perm   8132 sec   (550 perm/sec)   p_kst 1.908277e-04   p_cons 3.818790e-01   p_joint 3.988814e-04

Joint ci ratio: 9.266039e-02	ci left: 3.808237e-04	ci right 4.180413e-04	k: 1788	n:4480000
Cons ci ratio: 2.356209e-03	ci left: 3.814367e-01	ci right 3.823367e-01	k: 1710852	n:4480000
KS ci ratio: 1.339700e-01	ci left: 1.782696e-04	ci right 2.040801e-04	k: 855	n:4480000
FAM5B   4480000 perm   8166 sec   (549 perm/sec)   p_kst 1.908482e-04   p_cons 3.818866e-01   p_joint 3.991071e-04

Joint ci ratio: 9.247961e-02	ci left: 3.814984e-04	ci right 4.187054e-04	k: 1795	n:4490000
Cons ci ratio: 2.353585e-03	ci left: 3.814368e-01	ci right 3.823358e-01	k: 1714669	n:4490000
KS ci ratio: 1.336581e-01	ci left: 1.787336e-04	ci right 2.045462e-04	k: 859	n:4490000
FAM5B   4490000 perm   8199 sec   (548 perm/sec)   p_kst 1.913140e-04   p_cons 3.818862e-01   p_joint 3.997773e-04

Joint ci ratio: 9.235114e-02	ci left: 3.817361e-04	ci right 4.189117e-04	k: 1800	n:4500000
Cons ci ratio: 2.350883e-03	ci left: 3.814544e-01	ci right 3.823524e-01	k: 1718565	n:4500000
KS ci ratio: 1.335029e-01	ci left: 1.787660e-04	ci right 2.045510e-04	k: 861	n:4500000
FAM5B   4500000 perm   8233 sec   (547 perm/sec)   p_kst 1.913333e-04   p_cons 3.819033e-01   p_joint 4.000000e-04

Joint ci ratio: 9.232554e-02	ci left: 3.811063e-04	ci right 4.182097e-04	k: 1801	n:4510000
Cons ci ratio: 2.348314e-03	ci left: 3.814471e-01	ci right 3.823441e-01	k: 1722349	n:4510000
KS ci ratio: 1.333483e-01	ci left: 1.787983e-04	ci right 2.045557e-04	k: 863	n:4510000
FAM5B   4510000 perm   8266 sec   (546 perm/sec)   p_kst 1.913525e-04   p_cons 3.818956e-01   p_joint 3.993348e-04

Joint ci ratio: 9.224879e-02	ci left: 3.809115e-04	ci right 4.179635e-04	k: 1804	n:4520000
Cons ci ratio: 2.345727e-03	ci left: 3.814452e-01	ci right 3.823412e-01	k: 1726157	n:4520000
KS ci ratio: 1.333483e-01	ci left: 1.784027e-04	ci right 2.041031e-04	k: 863	n:4520000
FAM5B   4520000 perm   8301 sec   (545 perm/sec)   p_kst 1.909292e-04   p_cons 3.818931e-01   p_joint 3.991150e-04

Joint ci ratio: 9.222328e-02	ci left: 3.802863e-04	ci right 4.172667e-04	k: 1805	n:4530000
Cons ci ratio: 2.343148e-03	ci left: 3.814435e-01	ci right 3.823385e-01	k: 1729966	n:4530000
KS ci ratio: 1.333484e-01	ci left: 1.780089e-04	ci right 2.036526e-04	k: 863	n:4530000
FAM5B   4530000 perm   8335 sec   (543 perm/sec)   p_kst 1.905077e-04   p_cons 3.818909e-01   p_joint 3.984547e-04

Joint ci ratio: 9.209587e-02	ci left: 3.805246e-04	ci right 4.174743e-04	k: 1810	n:4540000
Cons ci ratio: 2.340578e-03	ci left: 3.814416e-01	ci right 3.823356e-01	k: 1733774	n:4540000
KS ci ratio: 1.331175e-01	ci left: 1.782556e-04	ci right 2.038868e-04	k: 866	n:4540000
FAM5B   4540000 perm   8370 sec   (542 perm/sec)   p_kst 1.907489e-04   p_cons 3.818885e-01   p_joint 3.986784e-04

Joint ci ratio: 9.207048e-02	ci left: 3.799030e-04	ci right 4.167816e-04	k: 1811	n:4550000
Cons ci ratio: 2.337902e-03	ci left: 3.814628e-01	ci right 3.823558e-01	k: 1737687	n:4550000
KS ci ratio: 1.330408e-01	ci left: 1.780763e-04	ci right 2.036658e-04	k: 867	n:4550000
FAM5B   4550000 perm   8403 sec   (541 perm/sec)   p_kst 1.905495e-04   p_cons 3.819092e-01   p_joint 3.980220e-04

Joint ci ratio: 9.201973e-02	ci left: 3.794984e-04	ci right 4.163163e-04	k: 1813	n:4560000
Cons ci ratio: 2.335283e-03	ci left: 3.814742e-01	ci right 3.823663e-01	k: 1741556	n:4560000
KS ci ratio: 1.328878e-01	ci left: 1.781098e-04	ci right 2.036723e-04	k: 869	n:4560000
FAM5B   4560000 perm   8438 sec   (540 perm/sec)   p_kst 1.905702e-04   p_cons 3.819202e-01   p_joint 3.975877e-04

Joint ci ratio: 9.181745e-02	ci left: 3.803783e-04	ci right 4.171961e-04	k: 1821	n:4570000
Cons ci ratio: 2.332798e-03	ci left: 3.814602e-01	ci right 3.823513e-01	k: 1745309	n:4570000
KS ci ratio: 1.326592e-01	ci left: 1.783547e-04	ci right 2.039049e-04	k: 872	n:4570000
FAM5B   4570000 perm   8472 sec   (539 perm/sec)   p_kst 1.908096e-04   p_cons 3.819057e-01   p_joint 3.984683e-04

Joint ci ratio: 9.174197e-02	ci left: 3.801878e-04	ci right 4.169552e-04	k: 1824	n:4580000
Cons ci ratio: 2.330213e-03	ci left: 3.814681e-01	ci right 3.823582e-01	k: 1749162	n:4580000
KS ci ratio: 1.325075e-01	ci left: 1.783874e-04	ci right 2.039108e-04	k: 874	n:4580000
FAM5B   4580000 perm   8507 sec   (538 perm/sec)   p_kst 1.908297e-04   p_cons 3.819131e-01   p_joint 3.982533e-04

Joint ci ratio: 9.159151e-02	ci left: 3.806367e-04	ci right 4.173840e-04	k: 1830	n:4590000
Cons ci ratio: 2.327741e-03	ci left: 3.814548e-01	ci right 3.823440e-01	k: 1752918	n:4590000
KS ci ratio: 1.322809e-01	ci left: 1.786308e-04	ci right 2.041418e-04	k: 877	n:4590000
FAM5B   4590000 perm   8541 sec   (537 perm/sec)   p_kst 1.910675e-04   p_cons 3.818993e-01   p_joint 3.986928e-04

Joint ci ratio: 9.154155e-02	ci left: 3.802340e-04	ci right 4.169214e-04	k: 1832	n:4600000
Cons ci ratio: 2.325168e-03	ci left: 3.814638e-01	ci right 3.823520e-01	k: 1756776	n:4600000
KS ci ratio: 1.322057e-01	ci left: 1.784526e-04	ci right 2.039226e-04	k: 878	n:4600000
FAM5B   4600000 perm   8575 sec   (536 perm/sec)   p_kst 1.908696e-04   p_cons 3.819078e-01   p_joint 3.982609e-04

Joint ci ratio: 9.313079e-02	ci left: 3.662706e-04	ci right 4.022576e-04	k: 1770	n:4610000
Cons ci ratio: 2.322711e-03	ci left: 3.814508e-01	ci right 3.823380e-01	k: 1760533	n:4610000
KS ci ratio: 1.319806e-01	ci left: 1.786948e-04	ci right 2.041525e-04	k: 881	n:4610000
FAM5B   4610000 perm   8610 sec   (535 perm/sec)   p_kst 1.911063e-04   p_cons 3.818944e-01   p_joint 3.839479e-04

Joint ci ratio: 9.374177e-02	ci left: 3.606158e-04	ci right 3.962924e-04	k: 1747	n:4620000
Cons ci ratio: 2.320253e-03	ci left: 3.814396e-01	ci right 3.823259e-01	k: 1764298	n:4620000
KS ci ratio: 1.318312e-01	ci left: 1.787266e-04	ci right 2.041578e-04	k: 883	n:4620000
FAM5B   4620000 perm   8645 sec   (534 perm/sec)   p_kst 1.911255e-04   p_cons 3.818827e-01   p_joint 3.781385e-04

Joint ci ratio: 9.371499e-02	ci left: 3.600478e-04	ci right 3.956575e-04	k: 1748	n:4630000
Cons ci ratio: 2.317729e-03	ci left: 3.814436e-01	ci right 3.823289e-01	k: 1768133	n:4630000
KS ci ratio: 1.317568e-01	ci left: 1.785495e-04	ci right 2.039400e-04	k: 884	n:4630000
FAM5B   4630000 perm   8680 sec   (533 perm/sec)   p_kst 1.909287e-04   p_cons 3.818862e-01   p_joint 3.775378e-04

Joint ci ratio: 9.368824e-02	ci left: 3.594823e-04	ci right 3.950253e-04	k: 1749	n:4640000
Cons ci ratio: 2.315213e-03	ci left: 3.814476e-01	ci right 3.823319e-01	k: 1771968	n:4640000
KS ci ratio: 1.317568e-01	ci left: 1.781646e-04	ci right 2.035004e-04	k: 884	n:4640000
FAM5B   4640000 perm   8715 sec   (532 perm/sec)   p_kst 1.905172e-04   p_cons 3.818897e-01   p_joint 3.769397e-04

Joint ci ratio: 9.360805e-02	ci left: 3.593393e-04	ci right 3.948361e-04	k: 1752	n:4650000
Cons ci ratio: 2.312758e-03	ci left: 3.814407e-01	ci right 3.823241e-01	k: 1775753	n:4650000
KS ci ratio: 1.315340e-01	ci left: 1.784054e-04	ci right 2.037292e-04	k: 887	n:4650000
FAM5B   4650000 perm   8750 sec   (531 perm/sec)   p_kst 1.907527e-04   p_cons 3.818824e-01   p_joint 3.767742e-04

Joint ci ratio: 9.352806e-02	ci left: 3.591969e-04	ci right 3.946476e-04	k: 1755	n:4660000
Cons ci ratio: 2.310289e-03	ci left: 3.814385e-01	ci right 3.823209e-01	k: 1779559	n:4660000
KS ci ratio: 1.313124e-01	ci left: 1.786452e-04	ci right 2.039569e-04	k: 890	n:4660000
FAM5B   4660000 perm   8785 sec   (530 perm/sec)   p_kst 1.909871e-04   p_cons 3.818796e-01   p_joint 3.766094e-04

Joint ci ratio: 9.350147e-02	ci left: 3.586368e-04	ci right 3.940217e-04	k: 1756	n:4670000
Cons ci ratio: 2.307761e-03	ci left: 3.814497e-01	ci right 3.823312e-01	k: 1783428	n:4670000
KS ci ratio: 1.312388e-01	ci left: 1.784697e-04	ci right 2.037414e-04	k: 891	n:4670000
FAM5B   4670000 perm   8821 sec   (529 perm/sec)   p_kst 1.907923e-04   p_cons 3.818904e-01   p_joint 3.760171e-04

Joint ci ratio: 9.336870e-02	ci left: 3.589139e-04	ci right 3.942731e-04	k: 1761	n:4680000
Cons ci ratio: 2.305339e-03	ci left: 3.814410e-01	ci right 3.823216e-01	k: 1787204	n:4680000
KS ci ratio: 1.310186e-01	ci left: 1.787084e-04	ci right 2.039681e-04	k: 894	n:4680000
FAM5B   4680000 perm   8857 sec   (528 perm/sec)   p_kst 1.910256e-04   p_cons 3.818812e-01   p_joint 3.762821e-04

Joint ci ratio: 9.321011e-02	ci left: 3.593981e-04	ci right 3.947416e-04	k: 1767	n:4690000
Cons ci ratio: 2.302822e-03	ci left: 3.814534e-01	ci right 3.823331e-01	k: 1791079	n:4690000
KS ci ratio: 1.307268e-01	ci left: 1.791523e-04	ci right 2.044139e-04	k: 898	n:4690000
FAM5B   4690000 perm   8891 sec   (527 perm/sec)   p_kst 1.914712e-04   p_cons 3.818932e-01   p_joint 3.767591e-04

Joint ci ratio: 9.315745e-02	ci left: 3.590491e-04	ci right 3.943372e-04	k: 1769	n:4700000
Cons ci ratio: 2.300428e-03	ci left: 3.814420e-01	ci right 3.823207e-01	k: 1794842	n:4700000
KS ci ratio: 1.306541e-01	ci left: 1.789769e-04	ci right 2.041987e-04	k: 899	n:4700000
FAM5B   4700000 perm   8927 sec   (527 perm/sec)   p_kst 1.912766e-04   p_cons 3.818813e-01   p_joint 3.763830e-04

Joint ci ratio: 9.294759e-02	ci left: 3.599457e-04	ci right 3.952380e-04	k: 1777	n:4710000
Cons ci ratio: 2.297978e-03	ci left: 3.814440e-01	ci right 3.823218e-01	k: 1798668	n:4710000
KS ci ratio: 1.304369e-01	ci left: 1.792131e-04	ci right 2.044229e-04	k: 902	n:4710000
FAM5B   4710000 perm   8962 sec   (526 perm/sec)   p_kst 1.915074e-04   p_cons 3.818828e-01   p_joint 3.772824e-04

Joint ci ratio: 9.286929e-02	ci left: 3.598040e-04	ci right 3.950510e-04	k: 1780	n:4720000
Cons ci ratio: 2.295468e-03	ci left: 3.814598e-01	ci right 3.823366e-01	k: 1802559	n:4720000
KS ci ratio: 1.302927e-01	ci left: 1.792433e-04	ci right 2.044274e-04	k: 904	n:4720000
FAM5B   4720000 perm   8998 sec   (525 perm/sec)   p_kst 1.915254e-04   p_cons 3.818981e-01   p_joint 3.771186e-04

Joint ci ratio: 9.279118e-02	ci left: 3.596628e-04	ci right 3.948647e-04	k: 1783	n:4730000
Cons ci ratio: 2.293041e-03	ci left: 3.814600e-01	ci right 3.823359e-01	k: 1806377	n:4730000
KS ci ratio: 1.302208e-01	ci left: 1.790689e-04	ci right 2.042135e-04	k: 905	n:4730000
FAM5B   4730000 perm   9034 sec   (524 perm/sec)   p_kst 1.913319e-04   p_cons 3.818979e-01   p_joint 3.769556e-04

Joint ci ratio: 9.307872e-02	ci left: 3.566373e-04	ci right 3.916571e-04	k: 1772	n:4740000
Cons ci ratio: 2.290621e-03	ci left: 3.814605e-01	ci right 3.823355e-01	k: 1810196	n:4740000
KS ci ratio: 1.300773e-01	ci left: 1.790993e-04	ci right 2.042183e-04	k: 907	n:4740000
FAM5B   4740000 perm   9070 sec   (523 perm/sec)   p_kst 1.913502e-04   p_cons 3.818979e-01   p_joint 3.738397e-04

Joint ci ratio: 9.297390e-02	ci left: 3.567090e-04	ci right 3.916943e-04	k: 1776	n:4750000
Cons ci ratio: 2.288313e-03	ci left: 3.814393e-01	ci right 3.823133e-01	k: 1813912	n:4750000
KS ci ratio: 1.299343e-01	ci left: 1.791296e-04	ci right 2.042231e-04	k: 909	n:4750000
FAM5B   4750000 perm   9105 sec   (522 perm/sec)   p_kst 1.913684e-04   p_cons 3.818762e-01   p_joint 3.738947e-04

Joint ci ratio: 9.292164e-02	ci left: 3.563700e-04	ci right 3.913013e-04	k: 1778	n:4760000
Cons ci ratio: 2.285879e-03	ci left: 3.814459e-01	ci right 3.823190e-01	k: 1817760	n:4760000
KS ci ratio: 1.297917e-01	ci left: 1.791598e-04	ci right 2.042279e-04	k: 911	n:4760000
FAM5B   4760000 perm   9141 sec   (521 perm/sec)   p_kst 1.913866e-04   p_cons 3.818824e-01   p_joint 3.735294e-04

Joint ci ratio: 9.334254e-02	ci left: 3.523467e-04	ci right 3.870486e-04	k: 1762	n:4770000
Cons ci ratio: 2.283481e-03	ci left: 3.814464e-01	ci right 3.823186e-01	k: 1821579	n:4770000
KS ci ratio: 1.296496e-01	ci left: 1.791899e-04	ci right 2.042326e-04	k: 913	n:4770000
FAM5B   4770000 perm   9176 sec   (520 perm/sec)   p_kst 1.914046e-04   p_cons 3.818824e-01   p_joint 3.693920e-04

Joint ci ratio: 9.321044e-02	ci left: 3.526312e-04	ci right 3.873093e-04	k: 1767	n:4780000
Cons ci ratio: 2.281045e-03	ci left: 3.814565e-01	ci right 3.823278e-01	k: 1825444	n:4780000
KS ci ratio: 1.294374e-01	ci left: 1.794223e-04	ci right 2.044533e-04	k: 916	n:4780000
FAM5B   4780000 perm   9212 sec   (519 perm/sec)   p_kst 1.916318e-04   p_cons 3.818921e-01   p_joint 3.696653e-04

Joint ci ratio: 9.310517e-02	ci left: 3.527106e-04	ci right 3.873552e-04	k: 1771	n:4790000
Cons ci ratio: 2.278663e-03	ci left: 3.814567e-01	ci right 3.823271e-01	k: 1829262	n:4790000
KS ci ratio: 1.291560e-01	ci left: 1.798558e-04	ci right 2.048885e-04	k: 920	n:4790000
FAM5B   4790000 perm   9248 sec   (518 perm/sec)   p_kst 1.920668e-04   p_cons 3.818919e-01   p_joint 3.697286e-04

Joint ci ratio: 9.302647e-02	ci left: 3.525862e-04	ci right 3.871878e-04	k: 1774	n:4800000
Cons ci ratio: 2.276268e-03	ci left: 3.814614e-01	ci right 3.823309e-01	k: 1833101	n:4800000
KS ci ratio: 1.291560e-01	ci left: 1.794811e-04	ci right 2.044617e-04	k: 920	n:4800000
FAM5B   4800000 perm   9283 sec   (517 perm/sec)   p_kst 1.916667e-04   p_cons 3.818960e-01   p_joint 3.695833e-04

Joint ci ratio: 9.294796e-02	ci left: 3.524624e-04	ci right 3.870210e-04	k: 1777	n:4810000
Cons ci ratio: 2.273916e-03	ci left: 3.814587e-01	ci right 3.823273e-01	k: 1836905	n:4810000
KS ci ratio: 1.290160e-01	ci left: 1.795103e-04	ci right 2.044658e-04	k: 922	n:4810000
FAM5B   4810000 perm   9319 sec   (516 perm/sec)   p_kst 1.916840e-04   p_cons 3.818929e-01   p_joint 3.694387e-04

Joint ci ratio: 9.286965e-02	ci left: 3.523391e-04	ci right 3.868550e-04	k: 1780	n:4820000
Cons ci ratio: 2.271481e-03	ci left: 3.814747e-01	ci right 3.823424e-01	k: 1840799	n:4820000
KS ci ratio: 1.288764e-01	ci left: 1.795395e-04	ci right 2.044699e-04	k: 924	n:4820000
FAM5B   4820000 perm   9355 sec   (515 perm/sec)   p_kst 1.917012e-04   p_cons 3.819085e-01   p_joint 3.692946e-04

Joint ci ratio: 9.271359e-02	ci left: 3.528230e-04	ci right 3.873251e-04	k: 1786	n:4830000
Cons ci ratio: 2.269224e-03	ci left: 3.814553e-01	ci right 3.823221e-01	k: 1844522	n:4830000
KS ci ratio: 1.285295e-01	ci left: 1.801696e-04	ci right 2.051151e-04	k: 929	n:4830000
FAM5B   4830000 perm   9391 sec   (514 perm/sec)   p_kst 1.923395e-04   p_cons 3.818886e-01   p_joint 3.697723e-04

Joint ci ratio: 9.263587e-02	ci left: 3.526995e-04	ci right 3.871590e-04	k: 1789	n:4840000
Cons ci ratio: 2.266846e-03	ci left: 3.814626e-01	ci right 3.823285e-01	k: 1848374	n:4840000
KS ci ratio: 1.285295e-01	ci left: 1.797974e-04	ci right 2.046913e-04	k: 929	n:4840000
FAM5B   4840000 perm   9427 sec   (513 perm/sec)   p_kst 1.919421e-04   p_cons 3.818955e-01   p_joint 3.696281e-04

Joint ci ratio: 9.250675e-02	ci left: 3.529794e-04	ci right 3.874155e-04	k: 1794	n:4850000
Cons ci ratio: 2.264434e-03	ci left: 3.814783e-01	ci right 3.823433e-01	k: 1852267	n:4850000
KS ci ratio: 1.283915e-01	ci left: 1.798258e-04	ci right 2.046949e-04	k: 931	n:4850000
FAM5B   4850000 perm   9464 sec   (512 perm/sec)   p_kst 1.919588e-04   p_cons 3.819107e-01   p_joint 3.698969e-04

Joint ci ratio: 9.292200e-02	ci left: 3.490372e-04	ci right 3.832499e-04	k: 1778	n:4860000
Cons ci ratio: 2.262131e-03	ci left: 3.814730e-01	ci right 3.823371e-01	k: 1856058	n:4860000
KS ci ratio: 1.283227e-01	ci left: 1.796549e-04	ci right 2.044861e-04	k: 932	n:4860000
FAM5B   4860000 perm   9500 sec   (512 perm/sec)   p_kst 1.917695e-04   p_cons 3.819049e-01   p_joint 3.658436e-04

Joint ci ratio: 9.276567e-02	ci left: 3.495239e-04	ci right 3.837236e-04	k: 1784	n:4870000
Cons ci ratio: 2.259748e-03	ci left: 3.814857e-01	ci right 3.823489e-01	k: 1859937	n:4870000
KS ci ratio: 1.282540e-01	ci left: 1.794847e-04	ci right 2.042781e-04	k: 933	n:4870000
FAM5B   4870000 perm   9537 sec   (511 perm/sec)   p_kst 1.915811e-04   p_cons 3.819172e-01   p_joint 3.663244e-04

Joint ci ratio: 9.271376e-02	ci left: 3.492080e-04	ci right 3.833566e-04	k: 1786	n:4880000
Cons ci ratio: 2.257431e-03	ci left: 3.814863e-01	ci right 3.823487e-01	k: 1863757	n:4880000
KS ci ratio: 1.281169e-01	ci left: 1.795136e-04	ci right 2.042825e-04	k: 935	n:4880000
FAM5B   4880000 perm   9574 sec   (510 perm/sec)   p_kst 1.915984e-04   p_cons 3.819174e-01   p_joint 3.659836e-04

Joint ci ratio: 9.263605e-02	ci left: 3.490932e-04	ci right 3.832004e-04	k: 1789	n:4890000
Cons ci ratio: 2.255135e-03	ci left: 3.814841e-01	ci right 3.823455e-01	k: 1867563	n:4890000
KS ci ratio: 1.279121e-01	ci left: 1.797404e-04	ci right 2.044979e-04	k: 938	n:4890000
FAM5B   4890000 perm   9610 sec   (509 perm/sec)   p_kst 1.918200e-04   p_cons 3.819147e-01   p_joint 3.658487e-04

Joint ci ratio: 9.250692e-02	ci left: 3.493775e-04	ci right 3.834623e-04	k: 1794	n:4900000
Cons ci ratio: 2.252836e-03	ci left: 3.814837e-01	ci right 3.823442e-01	k: 1871378	n:4900000
KS ci ratio: 1.278440e-01	ci left: 1.795711e-04	ci right 2.042911e-04	k: 939	n:4900000
FAM5B   4900000 perm   9647 sec   (508 perm/sec)   p_kst 1.916327e-04   p_cons 3.819139e-01   p_joint 3.661224e-04

Joint ci ratio: 9.263611e-02	ci left: 3.476712e-04	ci right 3.816395e-04	k: 1789	n:4910000
Cons ci ratio: 2.250448e-03	ci left: 3.815036e-01	ci right 3.823633e-01	k: 1875293	n:4910000
KS ci ratio: 1.278440e-01	ci left: 1.792054e-04	ci right 2.038751e-04	k: 939	n:4910000
FAM5B   4910000 perm   9684 sec   (507 perm/sec)   p_kst 1.912424e-04   p_cons 3.819334e-01   p_joint 3.643585e-04

Joint ci ratio: 9.336956e-02	ci left: 3.414058e-04	ci right 3.750405e-04	k: 1761	n:4920000
Cons ci ratio: 2.248123e-03	ci left: 3.815117e-01	ci right 3.823705e-01	k: 1879150	n:4920000
KS ci ratio: 1.278441e-01	ci left: 1.788412e-04	ci right 2.034607e-04	k: 939	n:4920000
FAM5B   4920000 perm   9721 sec   (506 perm/sec)   p_kst 1.908537e-04   p_cons 3.819411e-01   p_joint 3.579268e-04

Joint ci ratio: 9.329018e-02	ci left: 3.413076e-04	ci right 3.749024e-04	k: 1764	n:4930000
Cons ci ratio: 2.245811e-03	ci left: 3.815188e-01	ci right 3.823767e-01	k: 1883002	n:4930000
KS ci ratio: 1.278441e-01	ci left: 1.784784e-04	ci right 2.030480e-04	k: 939	n:4930000
FAM5B   4930000 perm   9759 sec   (505 perm/sec)   p_kst 1.904665e-04   p_cons 3.819477e-01   p_joint 3.578093e-04

Joint ci ratio: 9.326378e-02	ci left: 3.408144e-04	ci right 3.743507e-04	k: 1765	n:4940000
Cons ci ratio: 2.243561e-03	ci left: 3.815140e-01	ci right 3.823711e-01	k: 1886796	n:4940000
KS ci ratio: 1.277762e-01	ci left: 1.783131e-04	ci right 2.028458e-04	k: 940	n:4940000
FAM5B   4940000 perm   9796 sec   (504 perm/sec)   p_kst 1.902834e-04   p_cons 3.819425e-01   p_joint 3.572874e-04

Joint ci ratio: 9.310573e-02	ci left: 3.413098e-04	ci right 3.748348e-04	k: 1771	n:4950000
Cons ci ratio: 2.241329e-03	ci left: 3.815069e-01	ci right 3.823631e-01	k: 1890578	n:4950000
KS ci ratio: 1.277083e-01	ci left: 1.781484e-04	ci right 2.026445e-04	k: 941	n:4950000
FAM5B   4950000 perm   9834 sec   (503 perm/sec)   p_kst 1.901010e-04   p_cons 3.819349e-01   p_joint 3.577778e-04

Joint ci ratio: 9.305325e-02	ci left: 3.410155e-04	ci right 3.744917e-04	k: 1773	n:4960000
Cons ci ratio: 2.239050e-03	ci left: 3.815113e-01	ci right 3.823667e-01	k: 1894417	n:4960000
KS ci ratio: 1.276406e-01	ci left: 1.779844e-04	ci right 2.024440e-04	k: 942	n:4960000
FAM5B   4960000 perm   9872 sec   (502 perm/sec)   p_kst 1.899194e-04   p_cons 3.819389e-01   p_joint 3.574597e-04

Joint ci ratio: 9.297467e-02	ci left: 3.409189e-04	ci right 3.743558e-04	k: 1776	n:4970000
Cons ci ratio: 2.236765e-03	ci left: 3.815183e-01	ci right 3.823728e-01	k: 1898269	n:4970000
KS ci ratio: 1.275730e-01	ci left: 1.778211e-04	ci right 2.022443e-04	k: 943	n:4970000
FAM5B   4970000 perm   9909 sec   (502 perm/sec)   p_kst 1.897384e-04   p_cons 3.819455e-01   p_joint 3.573441e-04

Joint ci ratio: 9.287020e-02	ci left: 3.410189e-04	ci right 3.744260e-04	k: 1780	n:4980000
Cons ci ratio: 2.234525e-03	ci left: 3.815172e-01	ci right 3.823709e-01	k: 1902081	n:4980000
KS ci ratio: 1.275730e-01	ci left: 1.774640e-04	ci right 2.018382e-04	k: 943	n:4980000
FAM5B   4980000 perm   9947 sec   (501 perm/sec)   p_kst 1.893574e-04   p_cons 3.819440e-01   p_joint 3.574297e-04

Joint ci ratio: 9.287024e-02	ci left: 3.403355e-04	ci right 3.736756e-04	k: 1780	n:4990000
Cons ci ratio: 2.232273e-03	ci left: 3.815202e-01	ci right 3.823730e-01	k: 1905913	n:4990000
KS ci ratio: 1.275731e-01	ci left: 1.771083e-04	ci right 2.014337e-04	k: 943	n:4990000
FAM5B   4990000 perm   9984 sec   (500 perm/sec)   p_kst 1.889780e-04   p_cons 3.819465e-01   p_joint 3.567134e-04

Joint ci ratio: 8.967809e-02	ci left: 3.648663e-04	ci right 3.993166e-04	k: 1909	n:5000000
Cons ci ratio: 2.176233e-03	ci left: 3.931141e-01	ci right 3.939708e-01	k: 1967712	n:5000000
KS ci ratio: 1.275731e-01	ci left: 1.767541e-04	ci right 2.010309e-04	k: 943	n:5000000
FAM5B   5000000 perm   10022 sec   (499 perm/sec)   p_kst 1.886000e-04   p_cons 3.935424e-01   p_joint 3.818000e-04

Outputting figure to mutsig2_images.part000000000062/FAM5B.16_2380_5000000_0.0001886_0.39354_0.0003818.png
                gene_name: FAM5B
               theta_stop: 0.13 
                    nperm: 5000000 
                     p_ks: 0.00019 
        ci_ks_bounds_left: 0.00018 
       ci_ks_bounds_right: 0.00020 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.00038 
     ci_joint_bounds_left: 0.00036 
    ci_joint_bounds_right: 0.00040 

Current progress: 13 percent done.
FAM83B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
FAM83B   10000 perm   2 sec   (5274 perm/sec)   p_kst 3.351000e-01   p_cons 4.350000e-02   p_joint 1.160000e-01

Joint ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
Cons ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
KS ci ratio: 3.768713e-02	ci left: 3.443824e-01	ci right 3.576610e-01	k: 7020	n:20000
FAM83B   20000 perm   4 sec   (4839 perm/sec)   p_kst 3.510000e-01   p_cons 4.600000e-02   p_joint 1.069500e-01

Joint ci ratio: 5.772515e-02	ci left: 1.293740e-01	ci right 1.370972e-01	k: 3996	n:30000
Cons ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
KS ci ratio: 3.095119e-02	ci left: 3.429734e-01	ci right 3.537893e-01	k: 10451	n:30000
FAM83B   30000 perm   6 sec   (4660 perm/sec)   p_kst 3.483667e-01   p_cons 4.510000e-02   p_joint 1.332000e-01

Joint ci ratio: 5.290762e-02	ci left: 1.174731e-01	ci right 1.238821e-01	k: 4826	n:40000
Cons ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
KS ci ratio: 2.671179e-02	ci left: 3.452745e-01	ci right 3.546473e-01	k: 13998	n:40000
FAM83B   40000 perm   9 sec   (4533 perm/sec)   p_kst 3.499500e-01   p_cons 4.055000e-02   p_joint 1.206500e-01

Outputting figure to mutsig2_images.part000000000062/FAM83B.12_3052_40000_0.34995_0.04055_0.12065.png
                gene_name: FAM83B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 15 percent done.
FAM83C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
FAM83C   10000 perm   2 sec   (5616 perm/sec)   p_kst 1.866000e-01   p_cons 9.054000e-01   p_joint 3.377000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83C.10_2260_10000_0.1866_0.9054_0.3377.png
                gene_name: FAM83C
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
FANCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
FANCD2   10000 perm   2 sec   (5660 perm/sec)   p_kst 2.000000e-04   p_cons 9.983000e-01   p_joint 1.280000e-02

Joint ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
Cons ci ratio: 1.176913e-03	ci left: 9.975670e-01	ci right 9.987808e-01	k: 19965	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
FANCD2   20000 perm   4 sec   (5095 perm/sec)   p_kst 1.000000e-04   p_cons 9.982500e-01   p_joint 6.950000e-03

Joint ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
Cons ci ratio: 8.059269e-04	ci left: 9.983004e-01	ci right 9.991315e-01	k: 29963	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
FANCD2   30000 perm   6 sec   (4888 perm/sec)   p_kst 1.666667e-04   p_cons 9.987667e-01   p_joint 4.200000e-03

Joint ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
Cons ci ratio: 7.138793e-04	ci left: 9.982956e-01	ci right 9.990290e-01	k: 39948	n:40000
KS ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
FANCD2   40000 perm   8 sec   (4757 perm/sec)   p_kst 1.500000e-04   p_cons 9.987000e-01   p_joint 3.125000e-03

Joint ci ratio: 3.344457e-01	ci left: 2.282567e-03	ci right 3.216655e-03	k: 136	n:50000
Cons ci ratio: 6.469107e-04	ci left: 9.982986e-01	ci right 9.989614e-01	k: 49933	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
FANCD2   50000 perm   11 sec   (4654 perm/sec)   p_kst 1.800000e-04   p_cons 9.986600e-01   p_joint 2.720000e-03

Joint ci ratio: 3.395274e-01	ci left: 1.841037e-03	ci right 2.608386e-03	k: 132	n:60000
Cons ci ratio: 5.919985e-04	ci left: 9.983223e-01	ci right 9.989278e-01	k: 59919	n:60000
KS ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
FANCD2   60000 perm   13 sec   (4569 perm/sec)   p_kst 1.500000e-04   p_cons 9.986500e-01   p_joint 2.200000e-03

Joint ci ratio: 3.684622e-01	ci left: 1.317612e-03	ci right 1.924903e-03	k: 112	n:70000
Cons ci ratio: 5.315855e-04	ci left: 9.984356e-01	ci right 9.989788e-01	k: 69911	n:70000
KS ci ratio: 1.047552e+00	ci left: 9.888862e-05	ci right 3.175561e-04	k: 13	n:70000
FANCD2   70000 perm   16 sec   (4481 perm/sec)   p_kst 1.857143e-04   p_cons 9.987286e-01   p_joint 1.600000e-03

Joint ci ratio: 3.590762e-01	ci left: 1.221044e-03	ci right 1.766137e-03	k: 118	n:80000
Cons ci ratio: 4.927396e-04	ci left: 9.984799e-01	ci right 9.989828e-01	k: 79900	n:80000
KS ci ratio: 1.012038e+00	ci left: 9.567733e-05	ci right 2.936028e-04	k: 14	n:80000
FANCD2   80000 perm   18 sec   (4381 perm/sec)   p_kst 1.750000e-04   p_cons 9.987500e-01   p_joint 1.475000e-03

Joint ci ratio: 3.489749e-01	ci left: 1.156227e-03	ci right 1.654578e-03	k: 125	n:90000
Cons ci ratio: 4.612229e-04	ci left: 9.985149e-01	ci right 9.989853e-01	k: 89889	n:90000
KS ci ratio: 9.506446e-01	ci left: 1.016187e-04	ci right 2.886840e-04	k: 16	n:90000
FANCD2   90000 perm   21 sec   (4297 perm/sec)   p_kst 1.777778e-04   p_cons 9.987667e-01   p_joint 1.388889e-03

Joint ci ratio: 1.999177e-01	ci left: 3.447113e-03	ci right 4.222103e-03	k: 382	n:100000
Cons ci ratio: 4.278655e-04	ci left: 9.985870e-01	ci right 9.990232e-01	k: 99882	n:100000
KS ci ratio: 8.553200e-01	ci left: 1.221693e-04	ci right 3.088670e-04	k: 20	n:100000
FANCD2   100000 perm   24 sec   (4219 perm/sec)   p_kst 2.000000e-04   p_cons 9.988200e-01   p_joint 3.820000e-03

Joint ci ratio: 2.028977e-01	ci left: 3.038716e-03	ci right 3.733329e-03	k: 371	n:110000
Cons ci ratio: 4.143020e-04	ci left: 9.985574e-01	ci right 9.989792e-01	k: 109866	n:110000
KS ci ratio: 7.839073e-01	ci left: 1.397981e-04	ci right 3.246200e-04	k: 24	n:110000
FANCD2   110000 perm   27 sec   (4142 perm/sec)   p_kst 2.181818e-04   p_cons 9.987818e-01   p_joint 3.372727e-03

Joint ci ratio: 2.013044e-01	ci left: 2.832928e-03	ci right 3.474788e-03	k: 377	n:120000
Cons ci ratio: 3.962968e-04	ci left: 9.985694e-01	ci right 9.989726e-01	k: 119854	n:120000
KS ci ratio: 7.407208e-01	ci left: 1.482815e-04	ci right 3.273464e-04	k: 27	n:120000
FANCD2   120000 perm   29 sec   (4073 perm/sec)   p_kst 2.250000e-04   p_cons 9.987833e-01   p_joint 3.141667e-03

Joint ci ratio: 2.135762e-01	ci left: 2.308633e-03	ci right 2.867769e-03	k: 335	n:130000
Cons ci ratio: 3.828392e-04	ci left: 9.985632e-01	ci right 9.989525e-01	k: 129840	n:130000
KS ci ratio: 7.039661e-01	ci left: 1.557043e-04	ci right 3.294212e-04	k: 30	n:130000
FANCD2   130000 perm   32 sec   (4016 perm/sec)   p_kst 2.307692e-04   p_cons 9.987692e-01   p_joint 2.576923e-03

Joint ci ratio: 2.231161e-01	ci left: 1.954622e-03	ci right 2.452070e-03	k: 307	n:140000
Cons ci ratio: 3.727448e-04	ci left: 9.985429e-01	ci right 9.989216e-01	k: 139824	n:140000
KS ci ratio: 6.823015e-01	ci left: 1.563478e-04	ci right 3.226595e-04	k: 32	n:140000
FANCD2   140000 perm   35 sec   (3958 perm/sec)   p_kst 2.285714e-04   p_cons 9.987429e-01   p_joint 2.192857e-03

Joint ci ratio: 2.139325e-01	ci left: 1.994470e-03	ci right 2.478426e-03	k: 334	n:150000
Cons ci ratio: 3.623400e-04	ci left: 9.985329e-01	ci right 9.989008e-01	k: 149809	n:150000
KS ci ratio: 6.276187e-01	ci left: 1.792798e-04	ci right 3.477034e-04	k: 38	n:150000
FANCD2   150000 perm   38 sec   (3903 perm/sec)   p_kst 2.533333e-04   p_cons 9.987267e-01   p_joint 2.226667e-03

Joint ci ratio: 2.087061e-01	ci left: 1.970441e-03	ci right 2.435393e-03	k: 351	n:160000
Cons ci ratio: 3.594765e-04	ci left: 9.984709e-01	ci right 9.988356e-01	k: 159786	n:160000
KS ci ratio: 6.121208e-01	ci left: 1.786095e-04	ci right 3.404137e-04	k: 40	n:160000
FANCD2   160000 perm   42 sec   (3847 perm/sec)   p_kst 2.500000e-04   p_cons 9.986625e-01   p_joint 2.193750e-03

Joint ci ratio: 2.038449e-01	ci left: 1.949365e-03	ci right 2.397295e-03	k: 368	n:170000
Cons ci ratio: 3.522139e-04	ci left: 9.984481e-01	ci right 9.988052e-01	k: 169768	n:170000
KS ci ratio: 5.977170e-01	ci left: 1.780639e-04	ci right 3.339372e-04	k: 42	n:170000
FANCD2   170000 perm   45 sec   (3793 perm/sec)   p_kst 2.470588e-04   p_cons 9.986353e-01   p_joint 2.164706e-03

Joint ci ratio: 2.014107e-01	ci left: 1.888524e-03	ci right 2.316654e-03	k: 377	n:180000
Cons ci ratio: 3.404058e-04	ci left: 9.984693e-01	ci right 9.988143e-01	k: 179757	n:180000
KS ci ratio: 5.717145e-01	ci left: 1.871047e-04	ci right 3.408608e-04	k: 46	n:180000
FANCD2   180000 perm   48 sec   (3744 perm/sec)   p_kst 2.555556e-04   p_cons 9.986500e-01   p_joint 2.094444e-03

Joint ci ratio: 1.995787e-01	ci left: 1.824114e-03	ci right 2.233423e-03	k: 384	n:190000
Cons ci ratio: 3.309689e-04	ci left: 9.984772e-01	ci right 9.988125e-01	k: 189744	n:190000
KS ci ratio: 5.599263e-01	ci left: 1.862763e-04	ci right 3.349390e-04	k: 48	n:190000
FANCD2   190000 perm   51 sec   (3695 perm/sec)   p_kst 2.526316e-04   p_cons 9.986526e-01   p_joint 2.021053e-03

Joint ci ratio: 1.962957e-01	ci left: 1.794685e-03	ci right 2.189973e-03	k: 397	n:200000
Cons ci ratio: 3.222744e-04	ci left: 9.984844e-01	ci right 9.988109e-01	k: 199731	n:200000
KS ci ratio: 5.435342e-01	ci left: 1.898700e-04	ci right 3.352644e-04	k: 51	n:200000
FANCD2   200000 perm   55 sec   (3646 perm/sec)   p_kst 2.550000e-04   p_cons 9.986550e-01   p_joint 1.985000e-03

Joint ci ratio: 2.041645e-01	ci left: 1.573507e-03	ci right 1.935706e-03	k: 367	n:210000
Cons ci ratio: 3.158934e-04	ci left: 9.984759e-01	ci right 9.987958e-01	k: 209715	n:210000
KS ci ratio: 5.333746e-01	ci left: 1.890562e-04	ci right 3.301077e-04	k: 53	n:210000
FANCD2   210000 perm   58 sec   (3599 perm/sec)   p_kst 2.523810e-04   p_cons 9.986429e-01   p_joint 1.747619e-03

Joint ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
Cons ci ratio: 3.072770e-04	ci left: 9.984923e-01	ci right 9.988034e-01	k: 219704	n:220000
KS ci ratio: 5.237642e-01	ci left: 1.883396e-04	ci right 3.253971e-04	k: 55	n:220000
FANCD2   220000 perm   62 sec   (3551 perm/sec)   p_kst 2.500000e-04   p_cons 9.986545e-01   p_joint 1.650000e-03

Joint ci ratio: 2.061534e-01	ci left: 1.407796e-03	ci right 1.735405e-03	k: 360	n:230000
Cons ci ratio: 3.007652e-04	ci left: 9.984936e-01	ci right 9.987980e-01	k: 229690	n:230000
KS ci ratio: 5.060027e-01	ci left: 1.952818e-04	ci right 3.308820e-04	k: 59	n:230000
FANCD2   230000 perm   66 sec   (3504 perm/sec)   p_kst 2.565217e-04   p_cons 9.986522e-01   p_joint 1.565217e-03

Joint ci ratio: 2.030845e-01	ci left: 1.392622e-03	ci right 1.711277e-03	k: 371	n:240000
Cons ci ratio: 2.955563e-04	ci left: 9.984860e-01	ci right 9.987850e-01	k: 239674	n:240000
KS ci ratio: 4.938077e-01	ci left: 1.980682e-04	ci right 3.311596e-04	k: 62	n:240000
FANCD2   240000 perm   69 sec   (3460 perm/sec)   p_kst 2.583333e-04   p_cons 9.986417e-01   p_joint 1.545833e-03

Joint ci ratio: 2.001488e-01	ci left: 1.378695e-03	ci right 1.689046e-03	k: 382	n:250000
Cons ci ratio: 2.863210e-04	ci left: 9.985213e-01	ci right 9.988109e-01	k: 249668	n:250000
KS ci ratio: 4.899363e-01	ci left: 1.936490e-04	ci right 3.224061e-04	k: 63	n:250000
FANCD2   250000 perm   73 sec   (3417 perm/sec)   p_kst 2.520000e-04   p_cons 9.986720e-01   p_joint 1.528000e-03

Joint ci ratio: 2.087948e-01	ci left: 1.212528e-03	ci right 1.498773e-03	k: 351	n:260000
Cons ci ratio: 3.092319e-04	ci left: 9.982267e-01	ci right 9.985390e-01	k: 259581	n:260000
KS ci ratio: 4.788416e-01	ci left: 1.963299e-04	ci right 3.229434e-04	k: 66	n:260000
FANCD2   260000 perm   77 sec   (3376 perm/sec)   p_kst 2.538462e-04   p_cons 9.983885e-01   p_joint 1.350000e-03

Joint ci ratio: 2.079148e-01	ci left: 1.178149e-03	ci right 1.454956e-03	k: 354	n:270000
Cons ci ratio: 3.016503e-04	ci left: 9.982497e-01	ci right 9.985543e-01	k: 269570	n:270000
KS ci ratio: 4.753091e-01	ci left: 1.923164e-04	ci right 3.151288e-04	k: 67	n:270000
FANCD2   270000 perm   81 sec   (3336 perm/sec)   p_kst 2.481481e-04   p_cons 9.984074e-01   p_joint 1.311111e-03

Joint ci ratio: 2.121502e-01	ci left: 1.088696e-03	ci right 1.350375e-03	k: 340	n:280000
Cons ci ratio: 2.948967e-04	ci left: 9.982673e-01	ci right 9.985651e-01	k: 279558	n:280000
KS ci ratio: 4.684702e-01	ci left: 1.917410e-04	ci right 3.118609e-04	k: 69	n:280000
FANCD2   280000 perm   85 sec   (3296 perm/sec)   p_kst 2.464286e-04   p_cons 9.984214e-01   p_joint 1.214286e-03

Joint ci ratio: 2.088095e-01	ci left: 1.087087e-03	ci right 1.343738e-03	k: 351	n:290000
Cons ci ratio: 2.876022e-04	ci left: 9.982946e-01	ci right 9.985850e-01	k: 289549	n:290000
KS ci ratio: 4.556318e-01	ci left: 1.973166e-04	ci right 3.164951e-04	k: 73	n:290000
FANCD2   290000 perm   89 sec   (3256 perm/sec)   p_kst 2.517241e-04   p_cons 9.984448e-01   p_joint 1.210345e-03

Joint ci ratio: 2.070544e-01	ci left: 1.069808e-03	ci right 1.319988e-03	k: 357	n:300000
Cons ci ratio: 2.834984e-04	ci left: 9.982887e-01	ci right 9.985749e-01	k: 299531	n:300000
KS ci ratio: 4.437942e-01	ci left: 2.025625e-04	ci right 3.207790e-04	k: 77	n:300000
FANCD2   300000 perm   93 sec   (3218 perm/sec)   p_kst 2.566667e-04   p_cons 9.984367e-01   p_joint 1.190000e-03

Joint ci ratio: 2.106225e-01	ci left: 9.986087e-04	ci right 1.236682e-03	k: 345	n:310000
Cons ci ratio: 2.812747e-04	ci left: 9.982630e-01	ci right 9.985469e-01	k: 309507	n:310000
KS ci ratio: 4.354979e-01	ci left: 2.046342e-04	ci right 3.211735e-04	k: 80	n:310000
FANCD2   310000 perm   97 sec   (3181 perm/sec)   p_kst 2.580645e-04   p_cons 9.984097e-01   p_joint 1.112903e-03

Joint ci ratio: 2.134232e-01	ci left: 9.407674e-04	ci right 1.168424e-03	k: 336	n:320000
Cons ci ratio: 2.763182e-04	ci left: 9.982716e-01	ci right 9.985505e-01	k: 319493	n:320000
KS ci ratio: 4.276503e-01	ci left: 2.065959e-04	ci right 3.215243e-04	k: 83	n:320000
FANCD2   320000 perm   102 sec   (3147 perm/sec)   p_kst 2.593750e-04   p_cons 9.984156e-01   p_joint 1.050000e-03

Joint ci ratio: 2.207612e-01	ci left: 8.492118e-04	ci right 1.062738e-03	k: 314	n:330000
Cons ci ratio: 2.718718e-04	ci left: 9.982766e-01	ci right 9.985509e-01	k: 329478	n:330000
KS ci ratio: 4.202121e-01	ci left: 2.084563e-04	ci right 3.218365e-04	k: 86	n:330000
FANCD2   330000 perm   106 sec   (3112 perm/sec)   p_kst 2.606061e-04   p_cons 9.984182e-01   p_joint 9.515152e-04

Joint ci ratio: 2.186894e-01	ci left: 8.409105e-04	ci right 1.050099e-03	k: 320	n:340000
Cons ci ratio: 2.683789e-04	ci left: 9.982721e-01	ci right 9.985428e-01	k: 339460	n:340000
KS ci ratio: 4.131490e-01	ci left: 2.102237e-04	ci right 3.221143e-04	k: 89	n:340000
FANCD2   340000 perm   110 sec   (3079 perm/sec)   p_kst 2.617647e-04   p_cons 9.984118e-01   p_joint 9.411765e-04

Joint ci ratio: 2.150356e-01	ci left: 8.466064e-04	ci right 1.053228e-03	k: 331	n:350000
Cons ci ratio: 2.635851e-04	ci left: 9.982857e-01	ci right 9.985516e-01	k: 349448	n:350000
KS ci ratio: 4.064305e-01	ci left: 2.119051e-04	ci right 3.223614e-04	k: 92	n:350000
FANCD2   350000 perm   115 sec   (3045 perm/sec)   p_kst 2.628571e-04   p_cons 9.984229e-01   p_joint 9.457143e-04

Joint ci ratio: 2.118683e-01	ci left: 8.493826e-04	ci right 1.053232e-03	k: 341	n:360000
Cons ci ratio: 2.610856e-04	ci left: 9.982726e-01	ci right 9.985359e-01	k: 359427	n:360000
KS ci ratio: 4.021299e-01	ci left: 2.110094e-04	ci right 3.195245e-04	k: 94	n:360000
FANCD2   360000 perm   120 sec   (3012 perm/sec)   p_kst 2.611111e-04   p_cons 9.984083e-01   p_joint 9.472222e-04

Joint ci ratio: 2.134385e-01	ci left: 8.136309e-04	ci right 1.010537e-03	k: 336	n:370000
Cons ci ratio: 2.575455e-04	ci left: 9.982743e-01	ci right 9.985340e-01	k: 369411	n:370000
KS ci ratio: 4.000309e-01	ci left: 2.077364e-04	ci right 3.138629e-04	k: 95	n:370000
FANCD2   370000 perm   124 sec   (2980 perm/sec)   p_kst 2.567568e-04   p_cons 9.984081e-01   p_joint 9.081081e-04

Joint ci ratio: 2.176846e-01	ci left: 7.598534e-04	ci right 9.478924e-04	k: 323	n:380000
Cons ci ratio: 2.530932e-04	ci left: 9.982896e-01	ci right 9.985448e-01	k: 379400	n:380000
KS ci ratio: 3.979644e-01	ci left: 2.046370e-04	ci right 3.084978e-04	k: 96	n:380000
FANCD2   380000 perm   129 sec   (2949 perm/sec)   p_kst 2.526316e-04   p_cons 9.984211e-01   p_joint 8.500000e-04

Joint ci ratio: 2.190445e-01	ci left: 7.306732e-04	ci right 9.127727e-04	k: 319	n:390000
Cons ci ratio: 2.506747e-04	ci left: 9.982802e-01	ci right 9.985329e-01	k: 389380	n:390000
KS ci ratio: 3.959295e-01	ci left: 2.016980e-04	ci right 3.034065e-04	k: 97	n:390000
FANCD2   390000 perm   134 sec   (2918 perm/sec)   p_kst 2.487179e-04   p_cons 9.984103e-01   p_joint 8.179487e-04

Joint ci ratio: 2.166876e-01	ci left: 7.289514e-04	ci right 9.084069e-04	k: 326	n:400000
Cons ci ratio: 2.473418e-04	ci left: 9.982842e-01	ci right 9.985335e-01	k: 399365	n:400000
KS ci ratio: 3.919505e-01	ci left: 2.011602e-04	ci right 3.013143e-04	k: 99	n:400000
FANCD2   400000 perm   139 sec   (2888 perm/sec)   p_kst 2.475000e-04   p_cons 9.984125e-01   p_joint 8.150000e-04

Joint ci ratio: 2.147272e-01	ci left: 7.250155e-04	ci right 9.016744e-04	k: 332	n:410000
Cons ci ratio: 2.437619e-04	ci left: 9.982931e-01	ci right 9.985388e-01	k: 409352	n:410000
KS ci ratio: 3.880891e-01	ci left: 2.006535e-04	ci right 2.993193e-04	k: 101	n:410000
FANCD2   410000 perm   143 sec   (2858 perm/sec)   p_kst 2.463415e-04   p_cons 9.984195e-01   p_joint 8.097561e-04

Joint ci ratio: 2.073800e-01	ci left: 7.618783e-04	ci right 9.403618e-04	k: 356	n:420000
Cons ci ratio: 2.397827e-04	ci left: 9.983090e-01	ci right 9.985507e-01	k: 419342	n:420000
KS ci ratio: 3.843396e-01	ci left: 2.001756e-04	ci right 2.974148e-04	k: 103	n:420000
FANCD2   420000 perm   148 sec   (2830 perm/sec)   p_kst 2.452381e-04   p_cons 9.984333e-01   p_joint 8.476190e-04

Joint ci ratio: 2.076733e-01	ci left: 7.419547e-04	ci right 9.160478e-04	k: 355	n:430000
Cons ci ratio: 2.365045e-04	ci left: 9.983170e-01	ci right 9.985553e-01	k: 429329	n:430000
KS ci ratio: 3.754199e-01	ci left: 2.060381e-04	ci right 3.032310e-04	k: 108	n:430000
FANCD2   430000 perm   153 sec   (2804 perm/sec)   p_kst 2.511628e-04   p_cons 9.984395e-01   p_joint 8.255814e-04

Joint ci ratio: 2.045367e-01	ci left: 7.488021e-04	ci right 9.215166e-04	k: 366	n:440000
Cons ci ratio: 2.336946e-04	ci left: 9.983198e-01	ci right 9.985553e-01	k: 439314	n:440000
KS ci ratio: 3.703576e-01	ci left: 2.075347e-04	ci right 3.037936e-04	k: 111	n:440000
FANCD2   440000 perm   158 sec   (2776 perm/sec)   p_kst 2.522727e-04   p_cons 9.984409e-01   p_joint 8.318182e-04

Joint ci ratio: 2.031583e-01	ci left: 7.427058e-04	ci right 9.127163e-04	k: 371	n:450000
Cons ci ratio: 2.322968e-04	ci left: 9.983042e-01	ci right 9.985382e-01	k: 449291	n:450000
KS ci ratio: 3.703587e-01	ci left: 2.029227e-04	ci right 2.970428e-04	k: 111	n:450000
FANCD2   450000 perm   164 sec   (2750 perm/sec)   p_kst 2.466667e-04   p_cons 9.984244e-01   p_joint 8.244444e-04

Joint ci ratio: 2.020757e-01	ci left: 7.348142e-04	ci right 9.020113e-04	k: 375	n:460000
Cons ci ratio: 2.302682e-04	ci left: 9.982982e-01	ci right 9.985302e-01	k: 459272	n:460000
KS ci ratio: 3.703597e-01	ci left: 1.985113e-04	ci right 2.905855e-04	k: 111	n:460000
FANCD2   460000 perm   169 sec   (2724 perm/sec)   p_kst 2.413043e-04   p_cons 9.984174e-01   p_joint 8.152174e-04

Joint ci ratio: 1.996996e-01	ci left: 7.373657e-04	ci right 9.029303e-04	k: 384	n:470000
Cons ci ratio: 2.275222e-04	ci left: 9.983036e-01	ci right 9.985328e-01	k: 469258	n:470000
KS ci ratio: 3.654968e-01	ci left: 2.000805e-04	ci right 2.913734e-04	k: 114	n:470000
FANCD2   470000 perm   174 sec   (2698 perm/sec)   p_kst 2.425532e-04   p_cons 9.984213e-01   p_joint 8.170213e-04

Joint ci ratio: 1.969059e-01	ci left: 7.437831e-04	ci right 9.081720e-04	k: 395	n:480000
Cons ci ratio: 2.256135e-04	ci left: 9.982979e-01	ci right 9.985252e-01	k: 479239	n:480000
KS ci ratio: 3.639185e-01	ci left: 1.978045e-04	ci right 2.875766e-04	k: 115	n:480000
FANCD2   480000 perm   180 sec   (2673 perm/sec)   p_kst 2.395833e-04   p_cons 9.984146e-01   p_joint 8.229167e-04

Joint ci ratio: 1.951886e-01	ci left: 7.421883e-04	ci right 9.046240e-04	k: 402	n:490000
Cons ci ratio: 2.224533e-04	ci left: 9.983115e-01	ci right 9.985356e-01	k: 489229	n:490000
KS ci ratio: 3.608214e-01	ci left: 1.974777e-04	ci right 2.861594e-04	k: 117	n:490000
FANCD2   490000 perm   185 sec   (2649 perm/sec)   p_kst 2.387755e-04   p_cons 9.984265e-01   p_joint 8.204082e-04

Joint ci ratio: 1.935154e-01	ci left: 7.406632e-04	ci right 9.012120e-04	k: 409	n:500000
Cons ci ratio: 2.206713e-04	ci left: 9.983060e-01	ci right 9.985282e-01	k: 499210	n:500000
KS ci ratio: 3.608223e-01	ci left: 1.935281e-04	ci right 2.804363e-04	k: 117	n:500000
FANCD2   500000 perm   191 sec   (2624 perm/sec)   p_kst 2.340000e-04   p_cons 9.984200e-01   p_joint 8.180000e-04

Joint ci ratio: 1.923467e-01	ci left: 7.354706e-04	ci right 8.938183e-04	k: 414	n:510000
Cons ci ratio: 2.185216e-04	ci left: 9.983067e-01	ci right 9.985268e-01	k: 509194	n:510000
KS ci ratio: 3.578030e-01	ci left: 1.933010e-04	ci right 2.792117e-04	k: 119	n:510000
FANCD2   510000 perm   196 sec   (2600 perm/sec)   p_kst 2.333333e-04   p_cons 9.984196e-01   p_joint 8.117647e-04

Joint ci ratio: 1.928138e-01	ci left: 7.176656e-04	ci right 8.725990e-04	k: 412	n:520000
Cons ci ratio: 2.159061e-04	ci left: 9.983154e-01	ci right 9.985328e-01	k: 519182	n:520000
KS ci ratio: 3.519841e-01	ci left: 1.965903e-04	ci right 2.822174e-04	k: 123	n:520000
FANCD2   520000 perm   202 sec   (2576 perm/sec)   p_kst 2.365385e-04   p_cons 9.984269e-01   p_joint 7.923077e-04

Joint ci ratio: 1.900715e-01	ci left: 7.256814e-04	ci right 8.798598e-04	k: 424	n:530000
Cons ci ratio: 2.136349e-04	ci left: 9.983199e-01	ci right 9.985350e-01	k: 529168	n:530000
KS ci ratio: 3.450944e-01	ci left: 2.014894e-04	ci right 2.871490e-04	k: 128	n:530000
FANCD2   530000 perm   208 sec   (2553 perm/sec)   p_kst 2.415094e-04   p_cons 9.984302e-01   p_joint 8.000000e-04

Joint ci ratio: 1.876580e-01	ci left: 7.316504e-04	ci right 8.848982e-04	k: 435	n:540000
Cons ci ratio: 2.113080e-04	ci left: 9.983261e-01	ci right 9.985389e-01	k: 539155	n:540000
KS ci ratio: 3.385941e-01	ci left: 2.062227e-04	ci right 2.918823e-04	k: 133	n:540000
FANCD2   540000 perm   213 sec   (2531 perm/sec)   p_kst 2.462963e-04   p_cons 9.984352e-01   p_joint 8.055556e-04

Joint ci ratio: 1.853341e-01	ci left: 7.374141e-04	ci right 8.897416e-04	k: 446	n:550000
Cons ci ratio: 2.086875e-04	ci left: 9.983378e-01	ci right 9.985478e-01	k: 549145	n:550000
KS ci ratio: 3.348662e-01	ci left: 2.074666e-04	ci right 2.924893e-04	k: 136	n:550000
FANCD2   550000 perm   219 sec   (2508 perm/sec)   p_kst 2.472727e-04   p_cons 9.984455e-01   p_joint 8.109091e-04

Joint ci ratio: 1.834959e-01	ci left: 7.395756e-04	ci right 8.906658e-04	k: 455	n:560000
Cons ci ratio: 2.069865e-04	ci left: 9.983361e-01	ci right 9.985444e-01	k: 559128	n:560000
KS ci ratio: 3.312588e-01	ci left: 2.086711e-04	ci right 2.930698e-04	k: 139	n:560000
FANCD2   560000 perm   225 sec   (2485 perm/sec)   p_kst 2.482143e-04   p_cons 9.984429e-01   p_joint 8.125000e-04

Joint ci ratio: 1.839013e-01	ci left: 7.232526e-04	ci right 8.713709e-04	k: 453	n:570000
Cons ci ratio: 2.057875e-04	ci left: 9.983272e-01	ci right 9.985343e-01	k: 569107	n:570000
KS ci ratio: 3.266251e-01	ci left: 2.114483e-04	ci right 2.955231e-04	k: 143	n:570000
FANCD2   570000 perm   231 sec   (2464 perm/sec)   p_kst 2.508772e-04   p_cons 9.984333e-01   p_joint 7.947368e-04

Joint ci ratio: 1.533149e-01	ci left: 1.039539e-03	ci right 1.213782e-03	k: 652	n:580000
Cons ci ratio: 2.033664e-04	ci left: 9.983382e-01	ci right 9.985429e-01	k: 579097	n:580000
KS ci ratio: 3.179120e-01	ci left: 2.204805e-04	ci right 3.053325e-04	k: 151	n:580000
FANCD2   580000 perm   237 sec   (2443 perm/sec)   p_kst 2.603448e-04   p_cons 9.984431e-01   p_joint 1.124138e-03

Joint ci ratio: 1.523848e-01	ci left: 1.034960e-03	ci right 1.207287e-03	k: 660	n:590000
Cons ci ratio: 2.011314e-04	ci left: 9.983472e-01	ci right 9.985496e-01	k: 589086	n:590000
KS ci ratio: 3.168719e-01	ci left: 2.183034e-04	ci right 3.019869e-04	k: 152	n:590000
FANCD2   590000 perm   244 sec   (2422 perm/sec)   p_kst 2.576271e-04   p_cons 9.984508e-01   p_joint 1.118644e-03

Joint ci ratio: 1.563430e-01	ci left: 9.648320e-04	ci right 1.130046e-03	k: 627	n:600000
Cons ci ratio: 1.996083e-04	ci left: 9.983455e-01	ci right 9.985463e-01	k: 599069	n:600000
KS ci ratio: 3.158418e-01	ci left: 2.161993e-04	ci right 2.987524e-04	k: 153	n:600000
FANCD2   600000 perm   250 sec   (2401 perm/sec)   p_kst 2.550000e-04   p_cons 9.984483e-01   p_joint 1.045000e-03

Joint ci ratio: 1.548702e-01	ci left: 9.679214e-04	ci right 1.131958e-03	k: 639	n:610000
Cons ci ratio: 1.972807e-04	ci left: 9.983574e-01	ci right 9.985559e-01	k: 609060	n:610000
KS ci ratio: 3.128095e-01	ci left: 2.171852e-04	ci right 2.991596e-04	k: 156	n:610000
FANCD2   610000 perm   256 sec   (2381 perm/sec)   p_kst 2.557377e-04   p_cons 9.984590e-01   p_joint 1.047541e-03

Joint ci ratio: 1.534382e-01	ci left: 9.709181e-04	ci right 1.133802e-03	k: 651	n:620000
Cons ci ratio: 1.955370e-04	ci left: 9.983605e-01	ci right 9.985573e-01	k: 619046	n:620000
KS ci ratio: 3.118185e-01	ci left: 2.151687e-04	ci right 2.960734e-04	k: 157	n:620000
FANCD2   620000 perm   263 sec   (2361 perm/sec)   p_kst 2.532258e-04   p_cons 9.984613e-01   p_joint 1.050000e-03

Joint ci ratio: 1.532044e-01	ci left: 9.585590e-04	ci right 1.119102e-03	k: 653	n:630000
Cons ci ratio: 1.941387e-04	ci left: 9.983587e-01	ci right 9.985541e-01	k: 629029	n:630000
KS ci ratio: 3.088996e-01	ci left: 2.161444e-04	ci right 2.965054e-04	k: 160	n:630000
FANCD2   630000 perm   269 sec   (2341 perm/sec)   p_kst 2.539683e-04   p_cons 9.984587e-01   p_joint 1.036508e-03

Joint ci ratio: 1.523915e-01	ci left: 9.541007e-04	ci right 1.112971e-03	k: 660	n:640000
Cons ci ratio: 1.933543e-04	ci left: 9.983473e-01	ci right 9.985419e-01	k: 639006	n:640000
KS ci ratio: 3.069988e-01	ci left: 2.156507e-04	ci right 2.952382e-04	k: 162	n:640000
FANCD2   640000 perm   276 sec   (2321 perm/sec)   p_kst 2.531250e-04   p_cons 9.984469e-01   p_joint 1.031250e-03

Joint ci ratio: 1.518190e-01	ci left: 9.468215e-04	ci right 1.103834e-03	k: 665	n:650000
Cons ci ratio: 1.919043e-04	ci left: 9.983474e-01	ci right 9.985404e-01	k: 648990	n:650000
KS ci ratio: 3.042119e-01	ci left: 2.165945e-04	ci right 2.956642e-04	k: 165	n:650000
FANCD2   650000 perm   282 sec   (2302 perm/sec)   p_kst 2.538462e-04   p_cons 9.984462e-01   p_joint 1.023077e-03

Joint ci ratio: 1.506919e-01	ci left: 9.470538e-04	ci right 1.102834e-03	k: 675	n:660000
Cons ci ratio: 1.910428e-04	ci left: 9.983381e-01	ci right 9.985303e-01	k: 658968	n:660000
KS ci ratio: 3.023958e-01	ci left: 2.161125e-04	ci right 2.944447e-04	k: 167	n:660000
FANCD2   660000 perm   289 sec   (2283 perm/sec)   p_kst 2.530303e-04   p_cons 9.984364e-01   p_joint 1.022727e-03

Joint ci ratio: 1.530921e-01	ci left: 9.027650e-04	ci right 1.053842e-03	k: 654	n:670000
Cons ci ratio: 1.894622e-04	ci left: 9.983413e-01	ci right 9.985319e-01	k: 668954	n:670000
KS ci ratio: 3.023964e-01	ci left: 2.128869e-04	ci right 2.900501e-04	k: 167	n:670000
FANCD2   670000 perm   296 sec   (2265 perm/sec)   p_kst 2.492537e-04   p_cons 9.984388e-01   p_joint 9.761194e-04

Joint ci ratio: 1.523961e-01	ci left: 8.979751e-04	ci right 1.047505e-03	k: 660	n:680000
Cons ci ratio: 1.881856e-04	ci left: 9.983400e-01	ci right 9.985293e-01	k: 678937	n:680000
KS ci ratio: 3.023970e-01	ci left: 2.097561e-04	ci right 2.857847e-04	k: 167	n:680000
FANCD2   680000 perm   303 sec   (2247 perm/sec)   p_kst 2.455882e-04   p_cons 9.984368e-01   p_joint 9.705882e-04

Joint ci ratio: 1.517095e-01	ci left: 8.933256e-04	ci right 1.041350e-03	k: 666	n:690000
Cons ci ratio: 1.870208e-04	ci left: 9.983372e-01	ci right 9.985253e-01	k: 688919	n:690000
KS ci ratio: 2.997325e-01	ci left: 2.107357e-04	ci right 2.863182e-04	k: 170	n:690000
FANCD2   690000 perm   309 sec   (2230 perm/sec)   p_kst 2.463768e-04   p_cons 9.984333e-01   p_joint 9.652174e-04

Joint ci ratio: 1.508080e-01	ci left: 8.915598e-04	ci right 1.038335e-03	k: 674	n:700000
Cons ci ratio: 1.854528e-04	ci left: 9.983418e-01	ci right 9.985283e-01	k: 698906	n:700000
KS ci ratio: 2.988603e-01	ci left: 2.090464e-04	ci right 2.837635e-04	k: 171	n:700000
FANCD2   700000 perm   316 sec   (2213 perm/sec)   p_kst 2.442857e-04   p_cons 9.984371e-01   p_joint 9.628571e-04

Joint ci ratio: 1.492675e-01	ci left: 8.979809e-04	ci right 1.044168e-03	k: 688	n:710000
Cons ci ratio: 1.846693e-04	ci left: 9.983333e-01	ci right 9.985190e-01	k: 708884	n:710000
KS ci ratio: 2.971378e-01	ci left: 2.087085e-04	ci right 2.827937e-04	k: 173	n:710000
FANCD2   710000 perm   323 sec   (2197 perm/sec)   p_kst 2.436620e-04   p_cons 9.984282e-01   p_joint 9.690141e-04

Joint ci ratio: 1.519408e-01	ci left: 8.534301e-04	ci right 9.950792e-04	k: 664	n:720000
Cons ci ratio: 1.834041e-04	ci left: 9.983335e-01	ci right 9.985180e-01	k: 718868	n:720000
KS ci ratio: 2.937799e-01	ci left: 2.109536e-04	ci right 2.848321e-04	k: 177	n:720000
FANCD2   720000 perm   330 sec   (2180 perm/sec)   p_kst 2.458333e-04   p_cons 9.984278e-01   p_joint 9.222222e-04

Joint ci ratio: 1.511476e-01	ci left: 8.509647e-04	ci right 9.914005e-04	k: 671	n:730000
Cons ci ratio: 1.823232e-04	ci left: 9.983310e-01	ci right 9.985143e-01	k: 728850	n:730000
KS ci ratio: 2.929584e-01	ci left: 2.093329e-04	ci right 2.824007e-04	k: 178	n:730000
FANCD2   730000 perm   337 sec   (2164 perm/sec)   p_kst 2.438356e-04   p_cons 9.984247e-01   p_joint 9.191781e-04

Joint ci ratio: 1.512612e-01	ci left: 8.381645e-04	ci right 9.766013e-04	k: 670	n:740000
Cons ci ratio: 1.807162e-04	ci left: 9.983382e-01	ci right 9.985200e-01	k: 738839	n:740000
KS ci ratio: 2.921438e-01	ci left: 2.077562e-04	ci right 2.800347e-04	k: 179	n:740000
FANCD2   740000 perm   345 sec   (2148 perm/sec)   p_kst 2.418919e-04   p_cons 9.984311e-01   p_joint 9.054054e-04

Joint ci ratio: 1.502569e-01	ci left: 8.385363e-04	ci right 9.760322e-04	k: 679	n:750000
Cons ci ratio: 1.793774e-04	ci left: 9.983412e-01	ci right 9.985216e-01	k: 748825	n:750000
KS ci ratio: 2.897392e-01	ci left: 2.086943e-04	ci right 2.805920e-04	k: 182	n:750000
FANCD2   750000 perm   352 sec   (2132 perm/sec)   p_kst 2.426667e-04   p_cons 9.984333e-01   p_joint 9.053333e-04

Joint ci ratio: 1.586523e-01	ci left: 7.389517e-04	ci right 8.675339e-04	k: 609	n:760000
Cons ci ratio: 1.779176e-04	ci left: 9.983468e-01	ci right 9.985257e-01	k: 758813	n:760000
KS ci ratio: 2.866233e-01	ci left: 2.108311e-04	ci right 2.825425e-04	k: 186	n:760000
FANCD2   760000 perm   359 sec   (2116 perm/sec)   p_kst 2.447368e-04   p_cons 9.984382e-01   p_joint 8.013158e-04

Joint ci ratio: 1.576221e-01	ci left: 7.393334e-04	ci right 8.670676e-04	k: 617	n:770000
Cons ci ratio: 1.770061e-04	ci left: 9.983429e-01	ci right 9.985209e-01	k: 768794	n:770000
KS ci ratio: 2.843514e-01	ci left: 2.117102e-04	ci right 2.830474e-04	k: 189	n:770000
FANCD2   770000 perm   367 sec   (2100 perm/sec)   p_kst 2.454545e-04   p_cons 9.984338e-01   p_joint 8.012987e-04

Joint ci ratio: 1.564867e-01	ci left: 7.409398e-04	ci right 8.679429e-04	k: 626	n:780000
Cons ci ratio: 1.756028e-04	ci left: 9.983483e-01	ci right 9.985249e-01	k: 778782	n:780000
KS ci ratio: 2.814044e-01	ci left: 2.137605e-04	ci right 2.849095e-04	k: 193	n:780000
FANCD2   780000 perm   374 sec   (2085 perm/sec)   p_kst 2.474359e-04   p_cons 9.984385e-01   p_joint 8.025641e-04

Joint ci ratio: 1.550100e-01	ci left: 7.461589e-04	ci right 8.727375e-04	k: 638	n:790000
Cons ci ratio: 1.746557e-04	ci left: 9.983458e-01	ci right 9.985214e-01	k: 788764	n:790000
KS ci ratio: 2.806822e-01	ci left: 2.122312e-04	ci right 2.826579e-04	k: 194	n:790000
FANCD2   790000 perm   382 sec   (2070 perm/sec)   p_kst 2.455696e-04   p_cons 9.984354e-01   p_joint 8.075949e-04

Joint ci ratio: 1.542875e-01	ci left: 7.440416e-04	ci right 8.696184e-04	k: 644	n:800000
Cons ci ratio: 1.735150e-04	ci left: 9.983472e-01	ci right 9.985217e-01	k: 798749	n:800000
KS ci ratio: 2.799655e-01	ci left: 2.107405e-04	ci right 2.804624e-04	k: 195	n:800000
FANCD2   800000 perm   389 sec   (2054 perm/sec)   p_kst 2.437500e-04   p_cons 9.984363e-01   p_joint 8.050000e-04

Joint ci ratio: 1.541687e-01	ci left: 7.360426e-04	ci right 8.601648e-04	k: 645	n:810000
Cons ci ratio: 1.722600e-04	ci left: 9.983511e-01	ci right 9.985243e-01	k: 808736	n:810000
KS ci ratio: 2.778471e-01	ci left: 2.115834e-04	ci right 2.809619e-04	k: 198	n:810000
FANCD2   810000 perm   397 sec   (2040 perm/sec)   p_kst 2.444444e-04   p_cons 9.984395e-01   p_joint 7.962963e-04

Joint ci ratio: 1.533403e-01	ci left: 7.352746e-04	ci right 8.585398e-04	k: 652	n:820000
Cons ci ratio: 1.710981e-04	ci left: 9.983537e-01	ci right 9.985257e-01	k: 818722	n:820000
KS ci ratio: 2.764614e-01	ci left: 2.112727e-04	ci right 2.801437e-04	k: 200	n:820000
FANCD2   820000 perm   405 sec   (2026 perm/sec)   p_kst 2.439024e-04   p_cons 9.984415e-01   p_joint 7.951220e-04

Joint ci ratio: 1.531065e-01	ci left: 7.287329e-04	ci right 8.506981e-04	k: 654	n:830000
Cons ci ratio: 1.698933e-04	ci left: 9.983574e-01	ci right 9.985282e-01	k: 828709	n:830000
KS ci ratio: 2.757765e-01	ci left: 2.098486e-04	ci right 2.780565e-04	k: 201	n:830000
FANCD2   830000 perm   413 sec   (2011 perm/sec)   p_kst 2.421687e-04   p_cons 9.984446e-01   p_joint 7.879518e-04

Joint ci ratio: 1.547715e-01	ci left: 7.040322e-04	ci right 8.232635e-04	k: 640	n:840000
Cons ci ratio: 1.688424e-04	ci left: 9.983586e-01	ci right 9.985284e-01	k: 838694	n:840000
KS ci ratio: 2.744214e-01	ci left: 2.095672e-04	ci right 2.772911e-04	k: 203	n:840000
FANCD2   840000 perm   421 sec   (1997 perm/sec)   p_kst 2.416667e-04   p_cons 9.984452e-01   p_joint 7.619048e-04

Joint ci ratio: 1.538146e-01	ci left: 7.047978e-04	ci right 8.233529e-04	k: 648	n:850000
Cons ci ratio: 1.675562e-04	ci left: 9.983647e-01	ci right 9.985331e-01	k: 848683	n:850000
KS ci ratio: 2.717697e-01	ci left: 2.114854e-04	ci right 2.790561e-04	k: 207	n:850000
FANCD2   850000 perm   429 sec   (1983 perm/sec)   p_kst 2.435294e-04   p_cons 9.984506e-01   p_joint 7.623529e-04

Joint ci ratio: 1.551366e-01	ci left: 6.843057e-04	ci right 8.004950e-04	k: 637	n:860000
Cons ci ratio: 1.668601e-04	ci left: 9.983598e-01	ci right 9.985275e-01	k: 858663	n:860000
KS ci ratio: 2.704725e-01	ci left: 2.111937e-04	ci right 2.782946e-04	k: 209	n:860000
FANCD2   860000 perm   437 sec   (1969 perm/sec)   p_kst 2.430233e-04   p_cons 9.984453e-01   p_joint 7.406977e-04

Joint ci ratio: 1.544124e-01	ci left: 6.830695e-04	ci right 7.984574e-04	k: 643	n:870000
Cons ci ratio: 1.658641e-04	ci left: 9.983609e-01	ci right 9.985277e-01	k: 868648	n:870000
KS ci ratio: 2.685609e-01	ci left: 2.119815e-04	ci right 2.787765e-04	k: 212	n:870000
FANCD2   870000 perm   445 sec   (1956 perm/sec)   p_kst 2.436782e-04   p_cons 9.984460e-01   p_joint 7.390805e-04

Joint ci ratio: 1.340745e-01	ci left: 9.053806e-04	ci right 1.036576e-03	k: 853	n:880000
Cons ci ratio: 1.646441e-04	ci left: 9.983667e-01	ci right 9.985322e-01	k: 878637	n:880000
KS ci ratio: 2.660740e-01	ci left: 2.138136e-04	ci right 2.804579e-04	k: 216	n:880000
FANCD2   880000 perm   453 sec   (1943 perm/sec)   p_kst 2.454545e-04   p_cons 9.984511e-01   p_joint 9.693182e-04

Joint ci ratio: 1.337620e-01	ci left: 8.995515e-04	ci right 1.029574e-03	k: 857	n:890000
Cons ci ratio: 1.635084e-04	ci left: 9.983713e-01	ci right 9.985356e-01	k: 888625	n:890000
KS ci ratio: 2.654632e-01	ci left: 2.124599e-04	ci right 2.785050e-04	k: 217	n:890000
FANCD2   890000 perm   461 sec   (1930 perm/sec)   p_kst 2.438202e-04   p_cons 9.984551e-01   p_joint 9.629213e-04

Joint ci ratio: 1.364971e-01	ci left: 8.530542e-04	ci right 9.790824e-04	k: 823	n:900000
Cons ci ratio: 1.625120e-04	ci left: 9.983734e-01	ci right 9.985367e-01	k: 898611	n:900000
KS ci ratio: 2.648567e-01	ci left: 2.111364e-04	ci right 2.765953e-04	k: 218	n:900000
FANCD2   900000 perm   470 sec   (1917 perm/sec)   p_kst 2.422222e-04   p_cons 9.984567e-01   p_joint 9.144444e-04

Joint ci ratio: 1.358393e-01	ci left: 8.521717e-04	ci right 9.774138e-04	k: 831	n:910000
Cons ci ratio: 1.619937e-04	ci left: 9.983665e-01	ci right 9.985293e-01	k: 908589	n:910000
KS ci ratio: 2.636556e-01	ci left: 2.108685e-04	ci right 2.758989e-04	k: 220	n:910000
FANCD2   910000 perm   478 sec   (1904 perm/sec)   p_kst 2.417582e-04   p_cons 9.984495e-01   p_joint 9.131868e-04

Joint ci ratio: 1.348700e-01	ci left: 8.555109e-04	ci right 9.802745e-04	k: 843	n:920000
Cons ci ratio: 1.609686e-04	ci left: 9.983697e-01	ci right 9.985315e-01	k: 918576	n:920000
KS ci ratio: 2.595760e-01	ci left: 2.156863e-04	ci right 2.810064e-04	k: 227	n:920000
FANCD2   920000 perm   487 sec   (1891 perm/sec)   p_kst 2.467391e-04   p_cons 9.984522e-01   p_joint 9.163043e-04

Joint ci ratio: 1.339211e-01	ci left: 8.587813e-04	ci right 9.830706e-04	k: 855	n:930000
Cons ci ratio: 1.601292e-04	ci left: 9.983696e-01	ci right 9.985305e-01	k: 928560	n:930000
KS ci ratio: 2.567754e-01	ci left: 2.183956e-04	ci right 2.837082e-04	k: 232	n:930000
FANCD2   930000 perm   495 sec   (1878 perm/sec)   p_kst 2.494624e-04   p_cons 9.984516e-01   p_joint 9.193548e-04

Joint ci ratio: 1.341573e-01	ci left: 8.465605e-04	ci right 9.693144e-04	k: 852	n:940000
Cons ci ratio: 1.592481e-04	ci left: 9.983706e-01	ci right 9.985306e-01	k: 938545	n:940000
KS ci ratio: 2.562264e-01	ci left: 2.170677e-04	ci right 2.818221e-04	k: 233	n:940000
FANCD2   940000 perm   504 sec   (1866 perm/sec)   p_kst 2.478723e-04   p_cons 9.984521e-01   p_joint 9.063830e-04

Joint ci ratio: 1.363349e-01	ci left: 8.101888e-04	ci right 9.297303e-04	k: 825	n:950000
Cons ci ratio: 1.584892e-04	ci left: 9.983694e-01	ci right 9.985286e-01	k: 948528	n:950000
KS ci ratio: 2.545995e-01	ci left: 2.177385e-04	ci right 2.822152e-04	k: 236	n:950000
FANCD2   950000 perm   512 sec   (1854 perm/sec)   p_kst 2.484211e-04   p_cons 9.984505e-01   p_joint 8.684211e-04

Joint ci ratio: 1.352742e-01	ci left: 8.148311e-04	ci right 9.340469e-04	k: 838	n:960000
Cons ci ratio: 1.577408e-04	ci left: 9.983682e-01	ci right 9.985267e-01	k: 958511	n:960000
KS ci ratio: 2.519552e-01	ci left: 2.203482e-04	ci right 2.848136e-04	k: 241	n:960000
FANCD2   960000 perm   521 sec   (1842 perm/sec)   p_kst 2.510417e-04   p_cons 9.984490e-01   p_joint 8.729167e-04

Joint ci ratio: 1.344751e-01	ci left: 8.163922e-04	ci right 9.350744e-04	k: 848	n:970000
Cons ci ratio: 1.565849e-04	ci left: 9.983755e-01	ci right 9.985328e-01	k: 968502	n:970000
KS ci ratio: 2.504079e-01	ci left: 2.209747e-04	ci right 2.851645e-04	k: 244	n:970000
FANCD2   970000 perm   530 sec   (1830 perm/sec)   p_kst 2.515464e-04   p_cons 9.984557e-01   p_joint 8.742268e-04

Joint ci ratio: 1.374233e-01	ci left: 7.725751e-04	ci right 8.875512e-04	k: 812	n:980000
Cons ci ratio: 1.557090e-04	ci left: 9.983774e-01	ci right 9.985339e-01	k: 978488	n:980000
KS ci ratio: 2.498986e-01	ci left: 2.196762e-04	ci right 2.833389e-04	k: 245	n:980000
FANCD2   980000 perm   539 sec   (1817 perm/sec)   p_kst 2.500000e-04   p_cons 9.984571e-01   p_joint 8.285714e-04

Joint ci ratio: 1.370868e-01	ci left: 7.686728e-04	ci right 8.827652e-04	k: 816	n:990000
Cons ci ratio: 1.548476e-04	ci left: 9.983793e-01	ci right 9.985349e-01	k: 988474	n:990000
KS ci ratio: 2.493924e-01	ci left: 2.184042e-04	ci right 2.815501e-04	k: 246	n:990000
FANCD2   990000 perm   548 sec   (1806 perm/sec)   p_kst 2.484848e-04   p_cons 9.984586e-01   p_joint 8.242424e-04

Joint ci ratio: 1.360907e-01	ci left: 7.725761e-04	ci right 8.863472e-04	k: 828	n:1000000
Cons ci ratio: 1.540002e-04	ci left: 9.983812e-01	ci right 9.985359e-01	k: 998460	n:1000000
KS ci ratio: 2.464170e-01	ci left: 2.218475e-04	ci right 2.851065e-04	k: 252	n:1000000
FANCD2   1000000 perm   557 sec   (1794 perm/sec)   p_kst 2.520000e-04   p_cons 9.984600e-01   p_joint 8.280000e-04

Joint ci ratio: 1.354388e-01	ci left: 7.725786e-04	ci right 8.857612e-04	k: 836	n:1010000
Cons ci ratio: 1.535113e-04	ci left: 9.983759e-01	ci right 9.985301e-01	k: 1008439	n:1010000
KS ci ratio: 2.459316e-01	ci left: 2.205800e-04	ci right 2.833347e-04	k: 253	n:1010000
FANCD2   1010000 perm   567 sec   (1783 perm/sec)   p_kst 2.504950e-04   p_cons 9.984545e-01   p_joint 8.277228e-04

Joint ci ratio: 1.349561e-01	ci left: 7.706877e-04	ci right 8.831585e-04	k: 842	n:1020000
Cons ci ratio: 1.525402e-04	ci left: 9.983808e-01	ci right 9.985340e-01	k: 1018428	n:1020000
KS ci ratio: 2.449691e-01	ci left: 2.202576e-04	ci right 2.826381e-04	k: 255	n:1020000
FANCD2   1020000 perm   576 sec   (1772 perm/sec)   p_kst 2.500000e-04   p_cons 9.984588e-01   p_joint 8.254902e-04

Joint ci ratio: 1.343203e-01	ci left: 7.707106e-04	ci right 8.826126e-04	k: 850	n:1030000
Cons ci ratio: 1.518256e-04	ci left: 9.983806e-01	ci right 9.985331e-01	k: 1028412	n:1030000
KS ci ratio: 2.440179e-01	ci left: 2.199420e-04	ci right 2.819545e-04	k: 257	n:1030000
FANCD2   1030000 perm   585 sec   (1761 perm/sec)   p_kst 2.495146e-04   p_cons 9.984583e-01   p_joint 8.252427e-04

Joint ci ratio: 1.354404e-01	ci left: 7.502921e-04	ci right 8.602111e-04	k: 836	n:1040000
Cons ci ratio: 1.509794e-04	ci left: 9.983833e-01	ci right 9.985350e-01	k: 1038399	n:1040000
KS ci ratio: 2.435465e-01	ci left: 2.187299e-04	ci right 2.802636e-04	k: 258	n:1040000
FANCD2   1040000 perm   594 sec   (1750 perm/sec)   p_kst 2.480769e-04   p_cons 9.984606e-01   p_joint 8.038462e-04

Joint ci ratio: 1.347180e-01	ci left: 7.514283e-04	ci right 8.608795e-04	k: 845	n:1050000
Cons ci ratio: 1.501934e-04	ci left: 9.983851e-01	ci right 9.985360e-01	k: 1048385	n:1050000
KS ci ratio: 2.416872e-01	ci left: 2.202248e-04	ci right 2.816351e-04	k: 262	n:1050000
FANCD2   1050000 perm   604 sec   (1740 perm/sec)   p_kst 2.495238e-04   p_cons 9.984619e-01   p_joint 8.047619e-04

Joint ci ratio: 1.346389e-01	ci left: 7.452508e-04	ci right 8.537333e-04	k: 846	n:1060000
Cons ci ratio: 1.494195e-04	ci left: 9.983868e-01	ci right 9.985369e-01	k: 1058371	n:1060000
KS ci ratio: 2.407735e-01	ci left: 2.199199e-04	ci right 2.809788e-04	k: 264	n:1060000
FANCD2   1060000 perm   613 sec   (1729 perm/sec)   p_kst 2.490566e-04   p_cons 9.984632e-01   p_joint 7.981132e-04

Joint ci ratio: 1.340860e-01	ci left: 7.446080e-04	ci right 8.525164e-04	k: 853	n:1070000
Cons ci ratio: 1.483399e-04	ci left: 9.983952e-01	ci right 9.985442e-01	k: 1068364	n:1070000
KS ci ratio: 2.398701e-01	ci left: 2.196212e-04	ci right 2.803343e-04	k: 266	n:1070000
FANCD2   1070000 perm   623 sec   (1718 perm/sec)   p_kst 2.485981e-04   p_cons 9.984710e-01   p_joint 7.971963e-04

Joint ci ratio: 1.333077e-01	ci left: 7.466631e-04	ci right 8.541914e-04	k: 863	n:1080000
Cons ci ratio: 1.474591e-04	ci left: 9.983996e-01	ci right 9.985477e-01	k: 1078353	n:1080000
KS ci ratio: 2.389767e-01	ci left: 2.193284e-04	ci right 2.797013e-04	k: 268	n:1080000
FANCD2   1080000 perm   632 sec   (1708 perm/sec)   p_kst 2.481481e-04   p_cons 9.984750e-01   p_joint 7.990741e-04

Joint ci ratio: 1.327710e-01	ci left: 7.460212e-04	ci right 8.529905e-04	k: 870	n:1090000
Cons ci ratio: 1.467254e-04	ci left: 9.984011e-01	ci right 9.985485e-01	k: 1088339	n:1090000
KS ci ratio: 2.385339e-01	ci left: 2.181788e-04	ci right 2.781075e-04	k: 269	n:1090000
FANCD2   1090000 perm   642 sec   (1698 perm/sec)   p_kst 2.467890e-04   p_cons 9.984761e-01   p_joint 7.981651e-04

Joint ci ratio: 1.360959e-01	ci left: 7.023402e-04	ci right 8.057723e-04	k: 828	n:1100000
Cons ci ratio: 1.460026e-04	ci left: 9.984026e-01	ci right 9.985493e-01	k: 1098325	n:1100000
KS ci ratio: 2.380936e-01	ci left: 2.170501e-04	ci right 2.765426e-04	k: 270	n:1100000
FANCD2   1100000 perm   652 sec   (1688 perm/sec)   p_kst 2.454545e-04   p_cons 9.984773e-01   p_joint 7.527273e-04

Joint ci ratio: 1.355249e-01	ci left: 7.021048e-04	ci right 8.050336e-04	k: 835	n:1110000
Cons ci ratio: 1.452041e-04	ci left: 9.984059e-01	ci right 9.985518e-01	k: 1108313	n:1110000
KS ci ratio: 2.372199e-01	ci left: 2.167892e-04	ci right 2.759601e-04	k: 272	n:1110000
FANCD2   1110000 perm   662 sec   (1678 perm/sec)   p_kst 2.450450e-04   p_cons 9.984802e-01   p_joint 7.522523e-04

Joint ci ratio: 1.347214e-01	ci left: 7.044629e-04	ci right 8.070759e-04	k: 845	n:1120000
Cons ci ratio: 1.447155e-04	ci left: 9.984028e-01	ci right 9.985482e-01	k: 1118294	n:1120000
KS ci ratio: 2.363558e-01	ci left: 2.165334e-04	ci right 2.753876e-04	k: 274	n:1120000
FANCD2   1120000 perm   672 sec   (1667 perm/sec)   p_kst 2.446429e-04   p_cons 9.984768e-01   p_joint 7.544643e-04

Joint ci ratio: 1.340889e-01	ci left: 7.050703e-04	ci right 8.072512e-04	k: 853	n:1130000
Cons ci ratio: 1.440636e-04	ci left: 9.984034e-01	ci right 9.985481e-01	k: 1128279	n:1130000
KS ci ratio: 2.355010e-01	ci left: 2.162825e-04	ci right 2.748249e-04	k: 276	n:1130000
FANCD2   1130000 perm   682 sec   (1657 perm/sec)   p_kst 2.442478e-04   p_cons 9.984770e-01   p_joint 7.548673e-04

Joint ci ratio: 1.337762e-01	ci left: 7.022766e-04	ci right 8.037964e-04	k: 857	n:1140000
Cons ci ratio: 1.436271e-04	ci left: 9.983994e-01	ci right 9.985437e-01	k: 1138259	n:1140000
KS ci ratio: 2.355013e-01	ci left: 2.143852e-04	ci right 2.724142e-04	k: 276	n:1140000
FANCD2   1140000 perm   692 sec   (1648 perm/sec)   p_kst 2.421053e-04   p_cons 9.984728e-01   p_joint 7.517544e-04

Joint ci ratio: 1.330799e-01	ci left: 7.037347e-04	ci right 8.048940e-04	k: 866	n:1150000
Cons ci ratio: 1.432342e-04	ci left: 9.983946e-01	ci right 9.985385e-01	k: 1148238	n:1150000
KS ci ratio: 2.346557e-01	ci left: 2.141577e-04	ci right 2.718867e-04	k: 278	n:1150000
FANCD2   1150000 perm   702 sec   (1638 perm/sec)   p_kst 2.417391e-04   p_cons 9.984678e-01   p_joint 7.530435e-04

Joint ci ratio: 1.323945e-01	ci left: 7.051691e-04	ci right 8.059713e-04	k: 875	n:1160000
Cons ci ratio: 1.426022e-04	ci left: 9.983952e-01	ci right 9.985385e-01	k: 1158223	n:1160000
KS ci ratio: 2.338192e-01	ci left: 2.139345e-04	ci right 2.713680e-04	k: 280	n:1160000
FANCD2   1160000 perm   712 sec   (1629 perm/sec)   p_kst 2.413793e-04   p_cons 9.984681e-01   p_joint 7.543103e-04

Joint ci ratio: 1.317195e-01	ci left: 7.065802e-04	ci right 8.070289e-04	k: 884	n:1170000
Cons ci ratio: 1.420974e-04	ci left: 9.983932e-01	ci right 9.985359e-01	k: 1168205	n:1170000
KS ci ratio: 2.313618e-01	ci left: 2.169354e-04	ci right 2.744751e-04	k: 286	n:1170000
FANCD2   1170000 perm   722 sec   (1620 perm/sec)   p_kst 2.444444e-04   p_cons 9.984658e-01   p_joint 7.555556e-04

Joint ci ratio: 1.310547e-01	ci left: 7.079687e-04	ci right 8.080673e-04	k: 893	n:1180000
Cons ci ratio: 1.413237e-04	ci left: 9.983973e-01	ci right 9.985392e-01	k: 1178194	n:1180000
KS ci ratio: 2.301619e-01	ci left: 2.174924e-04	ci right 2.748381e-04	k: 289	n:1180000
FANCD2   1180000 perm   733 sec   (1610 perm/sec)   p_kst 2.449153e-04   p_cons 9.984695e-01   p_joint 7.567797e-04

Joint ci ratio: 1.306172e-01	ci left: 7.068963e-04	ci right 8.064838e-04	k: 899	n:1190000
Cons ci ratio: 1.407552e-04	ci left: 9.983970e-01	ci right 9.985384e-01	k: 1188178	n:1190000
KS ci ratio: 2.301622e-01	ci left: 2.156647e-04	ci right 2.725286e-04	k: 289	n:1190000
FANCD2   1190000 perm   743 sec   (1601 perm/sec)   p_kst 2.428571e-04   p_cons 9.984689e-01   p_joint 7.554622e-04

Joint ci ratio: 1.301841e-01	ci left: 7.058424e-04	ci right 8.049262e-04	k: 905	n:1200000
Cons ci ratio: 1.401553e-04	ci left: 9.983976e-01	ci right 9.985383e-01	k: 1198163	n:1200000
KS ci ratio: 2.289808e-01	ci left: 2.162238e-04	ci right 2.729010e-04	k: 292	n:1200000
FANCD2   1200000 perm   753 sec   (1593 perm/sec)   p_kst 2.433333e-04   p_cons 9.984692e-01   p_joint 7.541667e-04

Joint ci ratio: 1.303285e-01	ci left: 6.984098e-04	ci right 7.965674e-04	k: 903	n:1210000
Cons ci ratio: 1.397891e-04	ci left: 9.983931e-01	ci right 9.985334e-01	k: 1208142	n:1210000
KS ci ratio: 2.289810e-01	ci left: 2.144368e-04	ci right 2.706457e-04	k: 292	n:1210000
FANCD2   1210000 perm   764 sec   (1584 perm/sec)   p_kst 2.413223e-04   p_cons 9.984645e-01   p_joint 7.462810e-04

Joint ci ratio: 1.299697e-01	ci left: 6.966500e-04	ci right 7.942699e-04	k: 908	n:1220000
Cons ci ratio: 1.391271e-04	ci left: 9.983953e-01	ci right 9.985351e-01	k: 1218129	n:1220000
KS ci ratio: 2.285914e-01	ci left: 2.134518e-04	ci right 2.692938e-04	k: 293	n:1220000
FANCD2   1220000 perm   775 sec   (1575 perm/sec)   p_kst 2.401639e-04   p_cons 9.984664e-01   p_joint 7.442623e-04

Joint ci ratio: 1.296138e-01	ci left: 6.949192e-04	ci right 7.920095e-04	k: 913	n:1230000
Cons ci ratio: 1.384742e-04	ci left: 9.983976e-01	ci right 9.985366e-01	k: 1228116	n:1230000
KS ci ratio: 2.282038e-01	ci left: 2.124829e-04	ci right 2.679639e-04	k: 294	n:1230000
FANCD2   1230000 perm   785 sec   (1566 perm/sec)   p_kst 2.390244e-04   p_cons 9.984683e-01   p_joint 7.422764e-04

Joint ci ratio: 1.290503e-01	ci left: 6.955579e-04	ci right 7.922825e-04	k: 921	n:1240000
Cons ci ratio: 1.380845e-04	ci left: 9.983940e-01	ci right 9.985327e-01	k: 1238096	n:1240000
KS ci ratio: 2.278181e-01	ci left: 2.115297e-04	ci right 2.666554e-04	k: 295	n:1240000
FANCD2   1240000 perm   796 sec   (1558 perm/sec)   p_kst 2.379032e-04   p_cons 9.984645e-01   p_joint 7.427419e-04

Joint ci ratio: 1.280812e-01	ci left: 7.008334e-04	ci right 7.975041e-04	k: 935	n:1250000
Cons ci ratio: 1.377689e-04	ci left: 9.983889e-01	ci right 9.985272e-01	k: 1248074	n:1250000
KS ci ratio: 2.262941e-01	ci left: 2.128555e-04	ci right 2.679038e-04	k: 299	n:1250000
FANCD2   1250000 perm   807 sec   (1549 perm/sec)   p_kst 2.392000e-04   p_cons 9.984592e-01   p_joint 7.480000e-04

Joint ci ratio: 1.276727e-01	ci left: 6.998807e-04	ci right 7.960889e-04	k: 941	n:1260000
Cons ci ratio: 1.372771e-04	ci left: 9.983879e-01	ci right 9.985257e-01	k: 1258057	n:1260000
KS ci ratio: 2.262943e-01	ci left: 2.111661e-04	ci right 2.657776e-04	k: 299	n:1260000
FANCD2   1260000 perm   818 sec   (1541 perm/sec)   p_kst 2.373016e-04   p_cons 9.984579e-01   p_joint 7.468254e-04

Joint ci ratio: 1.268670e-01	ci left: 7.035179e-04	ci right 7.995699e-04	k: 953	n:1270000
Cons ci ratio: 1.365807e-04	ci left: 9.983917e-01	ci right 9.985288e-01	k: 1268046	n:1270000
KS ci ratio: 2.251712e-01	ci left: 2.117320e-04	ci right 2.661804e-04	k: 302	n:1270000
FANCD2   1270000 perm   829 sec   (1533 perm/sec)   p_kst 2.377953e-04   p_cons 9.984614e-01   p_joint 7.503937e-04

Joint ci ratio: 1.261416e-01	ci left: 7.063436e-04	ci right 8.021887e-04	k: 964	n:1280000
Cons ci ratio: 1.360671e-04	ci left: 9.983915e-01	ci right 9.985281e-01	k: 1278030	n:1280000
KS ci ratio: 2.240646e-01	ci left: 2.122898e-04	ci right 2.665763e-04	k: 305	n:1280000
FANCD2   1280000 perm   840 sec   (1524 perm/sec)   p_kst 2.382812e-04   p_cons 9.984609e-01   p_joint 7.531250e-04

Joint ci ratio: 1.256220e-01	ci left: 7.068743e-04	ci right 8.023669e-04	k: 972	n:1290000
Cons ci ratio: 1.356617e-04	ci left: 9.983889e-01	ci right 9.985251e-01	k: 1288011	n:1290000
KS ci ratio: 2.233360e-01	ci left: 2.121076e-04	ci right 2.661469e-04	k: 307	n:1290000
FANCD2   1290000 perm   851 sec   (1516 perm/sec)   p_kst 2.379845e-04   p_cons 9.984581e-01   p_joint 7.534884e-04

Joint ci ratio: 1.251726e-01	ci left: 7.066525e-04	ci right 8.017483e-04	k: 979	n:1300000
Cons ci ratio: 1.349219e-04	ci left: 9.983942e-01	ci right 9.985297e-01	k: 1298002	n:1300000
KS ci ratio: 2.218996e-01	ci left: 2.133814e-04	ci right 2.673478e-04	k: 311	n:1300000
FANCD2   1300000 perm   862 sec   (1508 perm/sec)   p_kst 2.392308e-04   p_cons 9.984631e-01   p_joint 7.530769e-04

Joint ci ratio: 1.266693e-01	ci left: 6.842535e-04	ci right 7.775187e-04	k: 956	n:1310000
Cons ci ratio: 1.341592e-04	ci left: 9.984002e-01	ci right 9.985349e-01	k: 1307994	n:1310000
KS ci ratio: 2.218998e-01	ci left: 2.117525e-04	ci right 2.653070e-04	k: 311	n:1310000
FANCD2   1310000 perm   873 sec   (1500 perm/sec)   p_kst 2.374046e-04   p_cons 9.984687e-01   p_joint 7.297710e-04

Joint ci ratio: 1.305495e-01	ci left: 6.380091e-04	ci right 7.278415e-04	k: 900	n:1320000
Cons ci ratio: 1.338379e-04	ci left: 9.983961e-01	ci right 9.985305e-01	k: 1317973	n:1320000
KS ci ratio: 2.208405e-01	ci left: 2.122950e-04	ci right 2.656957e-04	k: 314	n:1320000
FANCD2   1320000 perm   885 sec   (1492 perm/sec)   p_kst 2.378788e-04   p_cons 9.984644e-01   p_joint 6.818182e-04

Joint ci ratio: 1.296885e-01	ci left: 6.419410e-04	ci right 7.316850e-04	k: 912	n:1330000
Cons ci ratio: 1.333546e-04	ci left: 9.983959e-01	ci right 9.985298e-01	k: 1327957	n:1330000
KS ci ratio: 2.194515e-01	ci left: 2.135406e-04	ci right 2.668710e-04	k: 318	n:1330000
FANCD2   1330000 perm   896 sec   (1484 perm/sec)   p_kst 2.390977e-04   p_cons 9.984639e-01   p_joint 6.857143e-04

Joint ci ratio: 1.291942e-01	ci left: 6.422051e-04	ci right 7.316176e-04	k: 919	n:1340000
Cons ci ratio: 1.327796e-04	ci left: 9.983979e-01	ci right 9.985312e-01	k: 1337944	n:1340000
KS ci ratio: 2.191084e-01	ci left: 2.126522e-04	ci right 2.656667e-04	k: 319	n:1340000
FANCD2   1340000 perm   907 sec   (1477 perm/sec)   p_kst 2.380597e-04   p_cons 9.984657e-01   p_joint 6.858209e-04

Joint ci ratio: 1.327050e-01	ci left: 6.030562e-04	ci right 6.894798e-04	k: 871	n:1350000
Cons ci ratio: 1.321157e-04	ci left: 9.984022e-01	ci right 9.985349e-01	k: 1347934	n:1350000
KS ci ratio: 2.191086e-01	ci left: 2.110770e-04	ci right 2.636988e-04	k: 319	n:1350000
FANCD2   1350000 perm   919 sec   (1469 perm/sec)   p_kst 2.362963e-04   p_cons 9.984696e-01   p_joint 6.451852e-04

Joint ci ratio: 1.318010e-01	ci left: 6.071537e-04	ci right 6.935252e-04	k: 883	n:1360000
Cons ci ratio: 1.314292e-04	ci left: 9.984072e-01	ci right 9.985392e-01	k: 1357925	n:1360000
KS ci ratio: 2.174164e-01	ci left: 2.130005e-04	ci right 2.656369e-04	k: 324	n:1360000
FANCD2   1360000 perm   930 sec   (1462 perm/sec)   p_kst 2.382353e-04   p_cons 9.984743e-01   p_joint 6.492647e-04

Joint ci ratio: 1.147005e-01	ci left: 8.029575e-04	ci right 9.013621e-04	k: 1166	n:1370000
Cons ci ratio: 1.307834e-04	ci left: 9.984114e-01	ci right 9.985427e-01	k: 1367915	n:1370000
KS ci ratio: 2.164198e-01	ci left: 2.135166e-04	ci right 2.660065e-04	k: 327	n:1370000
FANCD2   1370000 perm   942 sec   (1454 perm/sec)   p_kst 2.386861e-04   p_cons 9.984781e-01   p_joint 8.510949e-04

Joint ci ratio: 1.144069e-01	ci left: 8.013622e-04	ci right 8.993029e-04	k: 1172	n:1380000
Cons ci ratio: 1.302085e-04	ci left: 9.984140e-01	ci right 9.985447e-01	k: 1377903	n:1380000
KS ci ratio: 2.157630e-01	ci left: 2.133402e-04	ci right 2.656065e-04	k: 329	n:1380000
FANCD2   1380000 perm   954 sec   (1447 perm/sec)   p_kst 2.384058e-04   p_cons 9.984804e-01   p_joint 8.492754e-04

Joint ci ratio: 1.142125e-01	ci left: 7.983924e-04	ci right 8.957931e-04	k: 1176	n:1390000
Cons ci ratio: 1.296408e-04	ci left: 9.984166e-01	ci right 9.985468e-01	k: 1387891	n:1390000
KS ci ratio: 2.154370e-01	ci left: 2.124859e-04	ci right 2.644539e-04	k: 330	n:1390000
FANCD2   1390000 perm   965 sec   (1440 perm/sec)   p_kst 2.374101e-04   p_cons 9.984827e-01   p_joint 8.460432e-04

Joint ci ratio: 1.139226e-01	ci left: 7.968530e-04	ci right 8.938026e-04	k: 1182	n:1400000
Cons ci ratio: 1.291715e-04	ci left: 9.984170e-01	ci right 9.985467e-01	k: 1397876	n:1400000
KS ci ratio: 2.147891e-01	ci left: 2.123198e-04	ci right 2.640704e-04	k: 332	n:1400000
FANCD2   1400000 perm   977 sec   (1433 perm/sec)   p_kst 2.371429e-04   p_cons 9.984829e-01   p_joint 8.442857e-04

Joint ci ratio: 1.135871e-01	ci left: 7.960248e-04	ci right 8.925693e-04	k: 1189	n:1410000
Cons ci ratio: 1.286771e-04	ci left: 9.984181e-01	ci right 9.985472e-01	k: 1407862	n:1410000
KS ci ratio: 2.135104e-01	ci left: 2.134987e-04	ci right 2.651863e-04	k: 336	n:1410000
FANCD2   1410000 perm   989 sec   (1425 perm/sec)   p_kst 2.382979e-04   p_cons 9.984837e-01   p_joint 8.432624e-04

Joint ci ratio: 1.131128e-01	ci left: 7.972616e-04	ci right 8.935254e-04	k: 1199	n:1420000
Cons ci ratio: 1.280690e-04	ci left: 9.984220e-01	ci right 9.985506e-01	k: 1417852	n:1420000
KS ci ratio: 2.128797e-01	ci left: 2.133285e-04	ci right 2.648024e-04	k: 338	n:1420000
FANCD2   1420000 perm   1001 sec   (1418 perm/sec)   p_kst 2.380282e-04   p_cons 9.984873e-01   p_joint 8.443662e-04

Joint ci ratio: 1.126910e-01	ci left: 7.978023e-04	ci right 8.937483e-04	k: 1208	n:1430000
Cons ci ratio: 1.277345e-04	ci left: 9.984195e-01	ci right 9.985477e-01	k: 1427833	n:1430000
KS ci ratio: 2.122545e-01	ci left: 2.131608e-04	ci right 2.644235e-04	k: 340	n:1430000
FANCD2   1430000 perm   1014 sec   (1411 perm/sec)   p_kst 2.377622e-04   p_cons 9.984846e-01   p_joint 8.447552e-04

Joint ci ratio: 1.123200e-01	ci left: 7.976613e-04	ci right 8.932536e-04	k: 1216	n:1440000
Cons ci ratio: 1.271979e-04	ci left: 9.984220e-01	ci right 9.985496e-01	k: 1437821	n:1440000
KS ci ratio: 2.119441e-01	ci left: 2.123381e-04	ci right 2.633186e-04	k: 341	n:1440000
FANCD2   1440000 perm   1026 sec   (1404 perm/sec)   p_kst 2.368056e-04   p_cons 9.984868e-01   p_joint 8.444444e-04

Joint ci ratio: 1.117247e-01	ci left: 8.008745e-04	ci right 8.963097e-04	k: 1229	n:1450000
Cons ci ratio: 1.271587e-04	ci left: 9.984124e-01	ci right 9.985401e-01	k: 1447792	n:1450000
KS ci ratio: 2.104114e-01	ci left: 2.141396e-04	ci right 2.651329e-04	k: 346	n:1450000
FANCD2   1450000 perm   1038 sec   (1397 perm/sec)   p_kst 2.386207e-04   p_cons 9.984772e-01   p_joint 8.475862e-04

Joint ci ratio: 1.114533e-01	ci left: 7.993840e-04	ci right 8.943949e-04	k: 1235	n:1460000
Cons ci ratio: 1.266873e-04	ci left: 9.984135e-01	ci right 9.985407e-01	k: 1457778	n:1460000
KS ci ratio: 2.098076e-01	ci left: 2.139707e-04	ci right 2.647588e-04	k: 348	n:1460000
FANCD2   1460000 perm   1050 sec   (1390 perm/sec)   p_kst 2.383562e-04   p_cons 9.984781e-01   p_joint 8.458904e-04

Joint ci ratio: 1.132089e-01	ci left: 7.688212e-04	ci right 8.617351e-04	k: 1197	n:1470000
Cons ci ratio: 1.262210e-04	ci left: 9.984146e-01	ci right 9.985413e-01	k: 1467764	n:1470000
KS ci ratio: 2.083205e-01	ci left: 2.157384e-04	ci right 2.665368e-04	k: 353	n:1470000
FANCD2   1470000 perm   1062 sec   (1384 perm/sec)   p_kst 2.401361e-04   p_cons 9.984789e-01   p_joint 8.142857e-04

Joint ci ratio: 1.127860e-01	ci left: 7.695357e-04	ci right 8.621654e-04	k: 1206	n:1480000
Cons ci ratio: 1.258717e-04	ci left: 9.984129e-01	ci right 9.985392e-01	k: 1477746	n:1480000
KS ci ratio: 2.071533e-01	ci left: 2.168429e-04	ci right 2.675790e-04	k: 357	n:1480000
FANCD2   1480000 perm   1075 sec   (1377 perm/sec)   p_kst 2.412162e-04   p_cons 9.984770e-01   p_joint 8.148649e-04

Joint ci ratio: 1.124141e-01	ci left: 7.695889e-04	ci right 8.618994e-04	k: 1214	n:1490000
Cons ci ratio: 1.253313e-04	ci left: 9.984160e-01	ci right 9.985418e-01	k: 1487735	n:1490000
KS ci ratio: 2.060055e-01	ci left: 2.179332e-04	ci right 2.686064e-04	k: 361	n:1490000
FANCD2   1490000 perm   1087 sec   (1370 perm/sec)   p_kst 2.422819e-04   p_cons 9.984799e-01   p_joint 8.147651e-04

Joint ci ratio: 1.120000e-01	ci left: 7.702900e-04	ci right 8.623217e-04	k: 1223	n:1500000
Cons ci ratio: 1.248523e-04	ci left: 9.984177e-01	ci right 9.985430e-01	k: 1497722	n:1500000
KS ci ratio: 2.051571e-01	ci left: 2.183774e-04	ci right 2.689185e-04	k: 364	n:1500000
FANCD2   1500000 perm   1100 sec   (1364 perm/sec)   p_kst 2.426667e-04   p_cons 9.984813e-01   p_joint 8.153333e-04

Joint ci ratio: 1.116358e-01	ci left: 7.703385e-04	ci right 8.620571e-04	k: 1231	n:1510000
Cons ci ratio: 1.244329e-04	ci left: 9.984181e-01	ci right 9.985429e-01	k: 1507707	n:1510000
KS ci ratio: 2.045974e-01	ci left: 2.181878e-04	ci right 2.685299e-04	k: 366	n:1510000
FANCD2   1510000 perm   1112 sec   (1358 perm/sec)   p_kst 2.423841e-04   p_cons 9.984815e-01   p_joint 8.152318e-04

Joint ci ratio: 1.111406e-01	ci left: 7.723058e-04	ci right 8.638240e-04	k: 1242	n:1520000
Cons ci ratio: 1.241253e-04	ci left: 9.984157e-01	ci right 9.985403e-01	k: 1517688	n:1520000
KS ci ratio: 2.037662e-01	ci left: 2.186251e-04	ci right 2.688377e-04	k: 369	n:1520000
FANCD2   1520000 perm   1124 sec   (1352 perm/sec)   p_kst 2.427632e-04   p_cons 9.984789e-01   p_joint 8.171053e-04

Joint ci ratio: 1.125544e-01	ci left: 7.475629e-04	ci right 8.373507e-04	k: 1211	n:1530000
Cons ci ratio: 1.235801e-04	ci left: 9.984194e-01	ci right 9.985434e-01	k: 1527678	n:1530000
KS ci ratio: 2.037664e-01	ci left: 2.171962e-04	ci right 2.670807e-04	k: 369	n:1530000
FANCD2   1530000 perm   1137 sec   (1345 perm/sec)   p_kst 2.411765e-04   p_cons 9.984824e-01   p_joint 7.915033e-04

Joint ci ratio: 1.124156e-01	ci left: 7.446017e-04	ci right 8.339163e-04	k: 1214	n:1540000
Cons ci ratio: 1.233052e-04	ci left: 9.984164e-01	ci right 9.985402e-01	k: 1537658	n:1540000
KS ci ratio: 2.029453e-01	ci left: 2.176347e-04	ci right 2.673935e-04	k: 372	n:1540000
FANCD2   1540000 perm   1150 sec   (1339 perm/sec)   p_kst 2.415584e-04   p_cons 9.984792e-01   p_joint 7.883117e-04

Joint ci ratio: 1.122311e-01	ci left: 7.423060e-04	ci right 8.311893e-04	k: 1218	n:1550000
Cons ci ratio: 1.228490e-04	ci left: 9.984181e-01	ci right 9.985414e-01	k: 1547645	n:1550000
KS ci ratio: 2.026739e-01	ci left: 2.168429e-04	ci right 2.663462e-04	k: 373	n:1550000
FANCD2   1550000 perm   1163 sec   (1333 perm/sec)   p_kst 2.406452e-04   p_cons 9.984806e-01   p_joint 7.858065e-04

Joint ci ratio: 1.119560e-01	ci left: 7.412859e-04	ci right 8.298152e-04	k: 1224	n:1560000
Cons ci ratio: 1.223718e-04	ci left: 9.984204e-01	ci right 9.985432e-01	k: 1557633	n:1560000
KS ci ratio: 2.018658e-01	ci left: 2.172786e-04	ci right 2.666592e-04	k: 376	n:1560000
FANCD2   1560000 perm   1176 sec   (1327 perm/sec)   p_kst 2.410256e-04   p_cons 9.984827e-01   p_joint 7.846154e-04

Joint ci ratio: 1.130231e-01	ci left: 7.223264e-04	ci right 8.094685e-04	k: 1201	n:1570000
Cons ci ratio: 1.220282e-04	ci left: 9.984194e-01	ci right 9.985418e-01	k: 1567616	n:1570000
KS ci ratio: 2.015987e-01	ci left: 2.164994e-04	ci right 2.656299e-04	k: 377	n:1570000
FANCD2   1570000 perm   1189 sec   (1321 perm/sec)   p_kst 2.401274e-04   p_cons 9.984815e-01   p_joint 7.649682e-04

Joint ci ratio: 1.127422e-01	ci left: 7.214450e-04	ci right 8.082499e-04	k: 1207	n:1580000
Cons ci ratio: 1.216619e-04	ci left: 9.984190e-01	ci right 9.985411e-01	k: 1577600	n:1580000
KS ci ratio: 2.013327e-01	ci left: 2.157302e-04	ci right 2.646135e-04	k: 378	n:1580000
FANCD2   1580000 perm   1202 sec   (1315 perm/sec)   p_kst 2.392405e-04   p_cons 9.984810e-01   p_joint 7.639241e-04

Joint ci ratio: 1.123245e-01	ci left: 7.224086e-04	ci right 8.089862e-04	k: 1216	n:1590000
Cons ci ratio: 1.212486e-04	ci left: 9.984200e-01	ci right 9.985417e-01	k: 1587586	n:1590000
KS ci ratio: 2.008036e-01	ci left: 2.155679e-04	ci right 2.642703e-04	k: 380	n:1590000
FANCD2   1590000 perm   1215 sec   (1309 perm/sec)   p_kst 2.389937e-04   p_cons 9.984818e-01   p_joint 7.647799e-04

Joint ci ratio: 1.124635e-01	ci left: 7.160712e-04	ci right 8.020025e-04	k: 1213	n:1600000
Cons ci ratio: 1.207149e-04	ci left: 9.984241e-01	ci right 9.985453e-01	k: 1597577	n:1600000
KS ci ratio: 2.005406e-01	ci left: 2.148142e-04	ci right 2.632750e-04	k: 381	n:1600000
FANCD2   1600000 perm   1228 sec   (1303 perm/sec)   p_kst 2.381250e-04   p_cons 9.984856e-01   p_joint 7.581250e-04

Joint ci ratio: 1.121867e-01	ci left: 7.152455e-04	ci right 8.008525e-04	k: 1219	n:1610000
Cons ci ratio: 1.203357e-04	ci left: 9.984244e-01	ci right 9.985452e-01	k: 1607562	n:1610000
KS ci ratio: 2.002788e-01	ci left: 2.140699e-04	ci right 2.622920e-04	k: 382	n:1610000
FANCD2   1610000 perm   1241 sec   (1297 perm/sec)   p_kst 2.372671e-04   p_cons 9.984857e-01   p_joint 7.571429e-04

Joint ci ratio: 1.117297e-01	ci left: 7.168304e-04	ci right 8.022546e-04	k: 1229	n:1620000
Cons ci ratio: 1.200091e-04	ci left: 9.984235e-01	ci right 9.985439e-01	k: 1617545	n:1620000
KS ci ratio: 1.997579e-01	ci left: 2.139212e-04	ci right 2.619693e-04	k: 384	n:1620000
FANCD2   1620000 perm   1255 sec   (1291 perm/sec)   p_kst 2.370370e-04   p_cons 9.984846e-01   p_joint 7.586420e-04

Joint ci ratio: 1.126968e-01	ci left: 6.999105e-04	ci right 7.840883e-04	k: 1208	n:1630000
Cons ci ratio: 1.196850e-04	ci left: 9.984225e-01	ci right 9.985426e-01	k: 1627528	n:1630000
KS ci ratio: 1.992411e-01	ci left: 2.137745e-04	ci right 2.616503e-04	k: 386	n:1630000
FANCD2   1630000 perm   1268 sec   (1285 perm/sec)   p_kst 2.368098e-04   p_cons 9.984834e-01   p_joint 7.411043e-04

Joint ci ratio: 1.124646e-01	ci left: 6.986057e-04	ci right 7.824419e-04	k: 1213	n:1640000
Cons ci ratio: 1.193634e-04	ci left: 9.984215e-01	ci right 9.985413e-01	k: 1637511	n:1640000
KS ci ratio: 1.989842e-01	ci left: 2.130504e-04	ci right 2.606950e-04	k: 387	n:1640000
FANCD2   1640000 perm   1282 sec   (1279 perm/sec)   p_kst 2.359756e-04   p_cons 9.984823e-01   p_joint 7.396341e-04

Joint ci ratio: 1.121877e-01	ci left: 6.979059e-04	ci right 7.814383e-04	k: 1219	n:1650000
Cons ci ratio: 1.189968e-04	ci left: 9.984218e-01	ci right 9.985412e-01	k: 1647496	n:1650000
KS ci ratio: 1.987284e-01	ci left: 2.123350e-04	ci right 2.597512e-04	k: 388	n:1650000
FANCD2   1650000 perm   1295 sec   (1274 perm/sec)   p_kst 2.351515e-04   p_cons 9.984824e-01   p_joint 7.387879e-04

Joint ci ratio: 1.118673e-01	ci left: 6.978003e-04	ci right 7.810659e-04	k: 1226	n:1660000
Cons ci ratio: 1.186335e-04	ci left: 9.984221e-01	ci right 9.985412e-01	k: 1657481	n:1660000
KS ci ratio: 1.979665e-01	ci left: 2.127734e-04	ci right 2.600833e-04	k: 391	n:1660000
FANCD2   1660000 perm   1309 sec   (1268 perm/sec)   p_kst 2.355422e-04   p_cons 9.984825e-01   p_joint 7.385542e-04

Joint ci ratio: 1.120505e-01	ci left: 6.912936e-04	ci right 7.739267e-04	k: 1222	n:1670000
Cons ci ratio: 1.182269e-04	ci left: 9.984236e-01	ci right 9.985423e-01	k: 1667468	n:1670000
KS ci ratio: 1.969640e-01	ci left: 2.137761e-04	ci right 2.610394e-04	k: 395	n:1670000
FANCD2   1670000 perm   1323 sec   (1262 perm/sec)   p_kst 2.365269e-04   p_cons 9.984838e-01   p_joint 7.317365e-04

Joint ci ratio: 1.116404e-01	ci left: 6.923861e-04	ci right 7.748269e-04	k: 1231	n:1680000
Cons ci ratio: 1.179864e-04	ci left: 9.984209e-01	ci right 9.985393e-01	k: 1677448	n:1680000
KS ci ratio: 1.962221e-01	ci left: 2.142014e-04	ci right 2.613591e-04	k: 398	n:1680000
FANCD2   1680000 perm   1337 sec   (1257 perm/sec)   p_kst 2.369048e-04   p_cons 9.984810e-01   p_joint 7.327381e-04

Joint ci ratio: 1.112348e-01	ci left: 6.934661e-04	ci right 7.757160e-04	k: 1240	n:1690000
Cons ci ratio: 1.175175e-04	ci left: 9.984242e-01	ci right 9.985421e-01	k: 1687438	n:1690000
KS ci ratio: 1.947630e-01	ci left: 2.163105e-04	ci right 2.635364e-04	k: 404	n:1690000
FANCD2   1690000 perm   1350 sec   (1252 perm/sec)   p_kst 2.390533e-04   p_cons 9.984840e-01   p_joint 7.337278e-04

Joint ci ratio: 1.107449e-01	ci left: 6.956779e-04	ci right 7.778030e-04	k: 1251	n:1700000
Cons ci ratio: 1.172586e-04	ci left: 9.984221e-01	ci right 9.985397e-01	k: 1697419	n:1700000
KS ci ratio: 1.935716e-01	ci left: 2.178363e-04	ci right 2.650701e-04	k: 409	n:1700000
FANCD2   1700000 perm   1364 sec   (1246 perm/sec)   p_kst 2.405882e-04   p_cons 9.984818e-01   p_joint 7.358824e-04

Joint ci ratio: 1.104366e-01	ci left: 6.955900e-04	ci right 7.774612e-04	k: 1258	n:1710000
Cons ci ratio: 1.168433e-04	ci left: 9.984242e-01	ci right 9.985414e-01	k: 1707407	n:1710000
KS ci ratio: 1.931012e-01	ci left: 2.176754e-04	ci right 2.647462e-04	k: 411	n:1710000
FANCD2   1710000 perm   1378 sec   (1241 perm/sec)   p_kst 2.403509e-04   p_cons 9.984836e-01   p_joint 7.356725e-04

Joint ci ratio: 1.102181e-01	ci left: 6.943726e-04	ci right 7.759283e-04	k: 1263	n:1720000
Cons ci ratio: 1.165665e-04	ci left: 9.984227e-01	ci right 9.985396e-01	k: 1717389	n:1720000
KS ci ratio: 1.924020e-01	ci left: 2.180699e-04	ci right 2.650352e-04	k: 414	n:1720000
FANCD2   1720000 perm   1392 sec   (1235 perm/sec)   p_kst 2.406977e-04   p_cons 9.984820e-01   p_joint 7.343023e-04

Joint ci ratio: 1.113705e-01	ci left: 6.757461e-04	ci right 7.559984e-04	k: 1237	n:1730000
Cons ci ratio: 1.163135e-04	ci left: 9.984206e-01	ci right 9.985373e-01	k: 1727370	n:1730000
KS ci ratio: 1.914813e-01	ci left: 2.190104e-04	ci right 2.659263e-04	k: 418	n:1730000
FANCD2   1730000 perm   1407 sec   (1230 perm/sec)   p_kst 2.416185e-04   p_cons 9.984798e-01   p_joint 7.150289e-04

Joint ci ratio: 1.116872e-01	ci left: 6.679516e-04	ci right 7.475186e-04	k: 1230	n:1740000
Cons ci ratio: 1.159523e-04	ci left: 9.984215e-01	ci right 9.985378e-01	k: 1737356	n:1740000
KS ci ratio: 1.910259e-01	ci left: 2.188461e-04	ci right 2.656024e-04	k: 420	n:1740000
FANCD2   1740000 perm   1421 sec   (1225 perm/sec)   p_kst 2.413793e-04   p_cons 9.984805e-01   p_joint 7.068966e-04

Joint ci ratio: 1.112362e-01	ci left: 6.696897e-04	ci right 7.491205e-04	k: 1240	n:1750000
Cons ci ratio: 1.154637e-04	ci left: 9.984258e-01	ci right 9.985417e-01	k: 1747348	n:1750000
KS ci ratio: 1.907996e-01	ci left: 2.181397e-04	ci right 2.646834e-04	k: 421	n:1750000
FANCD2   1750000 perm   1435 sec   (1219 perm/sec)   p_kst 2.405714e-04   p_cons 9.984846e-01   p_joint 7.085714e-04

Joint ci ratio: 1.109683e-01	ci left: 6.691990e-04	ci right 7.483679e-04	k: 1246	n:1760000
Cons ci ratio: 1.151966e-04	ci left: 9.984243e-01	ci right 9.985399e-01	k: 1757330	n:1760000
KS ci ratio: 1.901249e-01	ci left: 2.185235e-04	ci right 2.649652e-04	k: 424	n:1760000
FANCD2   1760000 perm   1450 sec   (1214 perm/sec)   p_kst 2.409091e-04   p_cons 9.984830e-01   p_joint 7.079545e-04

Joint ci ratio: 1.105699e-01	ci left: 6.703621e-04	ci right 7.493654e-04	k: 1255	n:1770000
Cons ci ratio: 1.148669e-04	ci left: 9.984246e-01	ci right 9.985399e-01	k: 1767315	n:1770000
KS ci ratio: 1.892364e-01	ci left: 2.194415e-04	ci right 2.658353e-04	k: 428	n:1770000
FANCD2   1770000 perm   1464 sec   (1209 perm/sec)   p_kst 2.418079e-04   p_cons 9.984831e-01   p_joint 7.090395e-04

Joint ci ratio: 1.103068e-01	ci left: 6.698737e-04	ci right 7.486194e-04	k: 1261	n:1780000
Cons ci ratio: 1.144339e-04	ci left: 9.984277e-01	ci right 9.985425e-01	k: 1777305	n:1780000
KS ci ratio: 1.885781e-01	ci left: 2.198144e-04	ci right 2.661068e-04	k: 431	n:1780000
FANCD2   1780000 perm   1479 sec   (1204 perm/sec)   p_kst 2.421348e-04   p_cons 9.984860e-01   p_joint 7.084270e-04

Joint ci ratio: 1.100890e-01	ci left: 6.688477e-04	ci right 7.473074e-04	k: 1266	n:1790000
Cons ci ratio: 1.140474e-04	ci left: 9.984297e-01	ci right 9.985441e-01	k: 1787293	n:1790000
KS ci ratio: 1.879267e-01	ci left: 2.201834e-04	ci right 2.663751e-04	k: 434	n:1790000
FANCD2   1790000 perm   1493 sec   (1199 perm/sec)   p_kst 2.424581e-04   p_cons 9.984877e-01   p_joint 7.072626e-04

Joint ci ratio: 1.103510e-01	ci left: 6.618903e-04	ci right 7.397307e-04	k: 1260	n:1800000
Cons ci ratio: 1.137275e-04	ci left: 9.984299e-01	ci right 9.985440e-01	k: 1797278	n:1800000
KS ci ratio: 1.870685e-01	ci left: 2.210781e-04	ci right 2.672216e-04	k: 438	n:1800000
FANCD2   1800000 perm   1508 sec   (1194 perm/sec)   p_kst 2.433333e-04   p_cons 9.984878e-01   p_joint 7.000000e-04

Joint ci ratio: 1.112824e-01	ci left: 6.469525e-04	ci right 7.237204e-04	k: 1239	n:1810000
Cons ci ratio: 1.132857e-04	ci left: 9.984335e-01	ci right 9.985472e-01	k: 1807269	n:1810000
KS ci ratio: 1.866439e-01	ci left: 2.209099e-04	ci right 2.669018e-04	k: 440	n:1810000
FANCD2   1810000 perm   1523 sec   (1188 perm/sec)   p_kst 2.430939e-04   p_cons 9.984912e-01   p_joint 6.845304e-04

Joint ci ratio: 1.111034e-01	ci left: 6.455345e-04	ci right 7.220029e-04	k: 1243	n:1820000
Cons ci ratio: 1.130133e-04	ci left: 9.984326e-01	ci right 9.985460e-01	k: 1817252	n:1820000
KS ci ratio: 1.866440e-01	ci left: 2.196961e-04	ci right 2.654353e-04	k: 440	n:1820000
FANCD2   1820000 perm   1538 sec   (1183 perm/sec)   p_kst 2.417582e-04   p_cons 9.984901e-01   p_joint 6.829670e-04

Joint ci ratio: 1.143701e-01	ci left: 6.048333e-04	ci right 6.787291e-04	k: 1173	n:1830000
Cons ci ratio: 1.126407e-04	ci left: 9.984345e-01	ci right 9.985475e-01	k: 1827240	n:1830000
KS ci ratio: 1.858032e-01	ci left: 2.205795e-04	ci right 2.662724e-04	k: 444	n:1830000
FANCD2   1830000 perm   1553 sec   (1178 perm/sec)   p_kst 2.426230e-04   p_cons 9.984918e-01   p_joint 6.409836e-04

Joint ci ratio: 1.152080e-01	ci left: 5.925720e-04	ci right 6.655363e-04	k: 1156	n:1840000
Cons ci ratio: 1.124135e-04	ci left: 9.984325e-01	ci right 9.985453e-01	k: 1837221	n:1840000
KS ci ratio: 1.853871e-01	ci left: 2.204172e-04	ci right 2.659627e-04	k: 446	n:1840000
FANCD2   1840000 perm   1568 sec   (1173 perm/sec)   p_kst 2.423913e-04   p_cons 9.984897e-01   p_joint 6.282609e-04

Joint ci ratio: 1.150590e-01	ci left: 5.909438e-04	ci right 6.636071e-04	k: 1159	n:1850000
Cons ci ratio: 1.121271e-04	ci left: 9.984322e-01	ci right 9.985446e-01	k: 1847205	n:1850000
KS ci ratio: 1.849737e-01	ci left: 2.202567e-04	ci right 2.656562e-04	k: 448	n:1850000
FANCD2   1850000 perm   1583 sec   (1168 perm/sec)   p_kst 2.421622e-04   p_cons 9.984892e-01   p_joint 6.264865e-04

Joint ci ratio: 1.144683e-01	ci left: 5.940332e-04	ci right 6.666760e-04	k: 1171	n:1860000
Cons ci ratio: 1.118031e-04	ci left: 9.984329e-01	ci right 9.985451e-01	k: 1857191	n:1860000
KS ci ratio: 1.835483e-01	ci left: 2.226624e-04	ci right 2.681648e-04	k: 455	n:1860000
FANCD2   1860000 perm   1598 sec   (1164 perm/sec)   p_kst 2.446237e-04   p_cons 9.984898e-01   p_joint 6.295699e-04

Joint ci ratio: 1.149603e-01	ci left: 5.856622e-04	ci right 6.576101e-04	k: 1161	n:1870000
Cons ci ratio: 1.115412e-04	ci left: 9.984320e-01	ci right 9.985439e-01	k: 1867174	n:1870000
KS ci ratio: 1.831471e-01	ci left: 2.224921e-04	ci right 2.678493e-04	k: 457	n:1870000
FANCD2   1870000 perm   1613 sec   (1159 perm/sec)   p_kst 2.443850e-04   p_cons 9.984888e-01   p_joint 6.208556e-04

Joint ci ratio: 1.147630e-01	ci left: 5.846135e-04	ci right 6.563010e-04	k: 1165	n:1880000
Cons ci ratio: 1.112222e-04	ci left: 9.984328e-01	ci right 9.985444e-01	k: 1877160	n:1880000
KS ci ratio: 1.827485e-01	ci left: 2.223238e-04	ci right 2.675370e-04	k: 459	n:1880000
FANCD2   1880000 perm   1629 sec   (1154 perm/sec)   p_kst 2.441489e-04   p_cons 9.984894e-01   p_joint 6.196809e-04

Joint ci ratio: 1.144689e-01	ci left: 5.846039e-04	ci right 6.560941e-04	k: 1171	n:1890000
Cons ci ratio: 1.109254e-04	ci left: 9.984330e-01	ci right 9.985443e-01	k: 1887145	n:1890000
KS ci ratio: 1.819590e-01	ci left: 2.231672e-04	ci right 2.683344e-04	k: 463	n:1890000
FANCD2   1890000 perm   1644 sec   (1150 perm/sec)   p_kst 2.449735e-04   p_cons 9.984894e-01   p_joint 6.195767e-04

Joint ci ratio: 1.144202e-01	ci left: 5.820383e-04	ci right 6.531824e-04	k: 1172	n:1900000
Cons ci ratio: 1.106117e-04	ci left: 9.984338e-01	ci right 9.985447e-01	k: 1897131	n:1900000
KS ci ratio: 1.813736e-01	ci left: 2.234998e-04	ci right 2.685728e-04	k: 466	n:1900000
FANCD2   1900000 perm   1660 sec   (1145 perm/sec)   p_kst 2.452632e-04   p_cons 9.984900e-01   p_joint 6.168421e-04

Joint ci ratio: 1.141287e-01	ci left: 5.820425e-04	ci right 6.529937e-04	k: 1178	n:1910000
Cons ci ratio: 1.103006e-04	ci left: 9.984345e-01	ci right 9.985451e-01	k: 1907117	n:1910000
KS ci ratio: 1.811798e-01	ci left: 2.228295e-04	ci right 2.677139e-04	k: 467	n:1910000
FANCD2   1910000 perm   1675 sec   (1140 perm/sec)   p_kst 2.445026e-04   p_cons 9.984906e-01   p_joint 6.167539e-04

Joint ci ratio: 1.138875e-01	ci left: 5.815410e-04	ci right 6.522711e-04	k: 1183	n:1920000
Cons ci ratio: 1.099351e-04	ci left: 9.984368e-01	ci right 9.985471e-01	k: 1917106	n:1920000
KS ci ratio: 1.807939e-01	ci left: 2.226634e-04	ci right 2.674084e-04	k: 469	n:1920000
FANCD2   1920000 perm   1691 sec   (1135 perm/sec)   p_kst 2.442708e-04   p_cons 9.984927e-01   p_joint 6.161458e-04

Joint ci ratio: 1.136001e-01	ci left: 5.815481e-04	ci right 6.520886e-04	k: 1189	n:1930000
Cons ci ratio: 1.095918e-04	ci left: 9.984386e-01	ci right 9.985485e-01	k: 1927094	n:1930000
KS ci ratio: 1.806020e-01	ci left: 2.220044e-04	ci right 2.665644e-04	k: 470	n:1930000
FANCD2   1930000 perm   1707 sec   (1131 perm/sec)   p_kst 2.435233e-04   p_cons 9.984943e-01   p_joint 6.160622e-04

Joint ci ratio: 1.133622e-01	ci left: 5.810546e-04	ci right 6.513778e-04	k: 1194	n:1940000
Cons ci ratio: 1.093453e-04	ci left: 9.984377e-01	ci right 9.985474e-01	k: 1937077	n:1940000
KS ci ratio: 1.800295e-01	ci left: 2.223366e-04	ci right 2.668065e-04	k: 473	n:1940000
FANCD2   1940000 perm   1722 sec   (1126 perm/sec)   p_kst 2.438144e-04   p_cons 9.984933e-01   p_joint 6.154639e-04

Joint ci ratio: 1.131730e-01	ci left: 5.800680e-04	ci right 6.501468e-04	k: 1198	n:1950000
Cons ci ratio: 1.090260e-04	ci left: 9.984389e-01	ci right 9.985483e-01	k: 1947064	n:1950000
KS ci ratio: 1.798400e-01	ci left: 2.216861e-04	ci right 2.659742e-04	k: 474	n:1950000
FANCD2   1950000 perm   1738 sec   (1122 perm/sec)   p_kst 2.430769e-04   p_cons 9.984944e-01   p_joint 6.143590e-04

Joint ci ratio: 1.132677e-01	ci left: 5.761169e-04	ci right 6.457805e-04	k: 1196	n:1960000
Cons ci ratio: 1.088386e-04	ci left: 9.984365e-01	ci right 9.985457e-01	k: 1957044	n:1960000
KS ci ratio: 1.794626e-01	ci left: 2.215296e-04	ci right 2.656834e-04	k: 476	n:1960000
FANCD2   1960000 perm   1754 sec   (1117 perm/sec)   p_kst 2.428571e-04   p_cons 9.984918e-01   p_joint 6.102041e-04

Joint ci ratio: 1.128911e-01	ci left: 5.771385e-04	ci right 6.466782e-04	k: 1204	n:1970000
Cons ci ratio: 1.085238e-04	ci left: 9.984377e-01	ci right 9.985466e-01	k: 1967031	n:1970000
KS ci ratio: 1.789009e-01	ci left: 2.218596e-04	ci right 2.659258e-04	k: 479	n:1970000
FANCD2   1970000 perm   1770 sec   (1113 perm/sec)   p_kst 2.431472e-04   p_cons 9.984929e-01   p_joint 6.111675e-04

Joint ci ratio: 1.125646e-01	ci left: 5.776594e-04	ci right 6.470471e-04	k: 1211	n:1980000
Cons ci ratio: 1.082299e-04	ci left: 9.984384e-01	ci right 9.985470e-01	k: 1977017	n:1980000
KS ci ratio: 1.783444e-01	ci left: 2.221866e-04	ci right 2.661656e-04	k: 482	n:1980000
FANCD2   1980000 perm   1786 sec   (1108 perm/sec)   p_kst 2.434343e-04   p_cons 9.984934e-01   p_joint 6.116162e-04

Joint ci ratio: 1.124256e-01	ci left: 5.762217e-04	ci right 6.453456e-04	k: 1214	n:1990000
Cons ci ratio: 1.079563e-04	ci left: 9.984386e-01	ci right 9.985469e-01	k: 1987002	n:1990000
KS ci ratio: 1.781601e-01	ci left: 2.215501e-04	ci right 2.653530e-04	k: 483	n:1990000
FANCD2   1990000 perm   1803 sec   (1104 perm/sec)   p_kst 2.427136e-04   p_cons 9.984935e-01   p_joint 6.100503e-04

Joint ci ratio: 1.120114e-01	ci left: 5.777143e-04	ci right 6.467451e-04	k: 1223	n:2000000
Cons ci ratio: 1.076133e-04	ci left: 9.984408e-01	ci right 9.985487e-01	k: 1996991	n:2000000
KS ci ratio: 1.776105e-01	ci left: 2.218756e-04	ci right 2.655929e-04	k: 486	n:2000000
FANCD2   2000000 perm   1819 sec   (1100 perm/sec)   p_kst 2.430000e-04   p_cons 9.984955e-01   p_joint 6.115000e-04

Joint ci ratio: 1.116925e-01	ci left: 5.782252e-04	ci right 6.471074e-04	k: 1230	n:2010000
Cons ci ratio: 1.074154e-04	ci left: 9.984389e-01	ci right 9.985467e-01	k: 2006972	n:2010000
KS ci ratio: 1.770659e-01	ci left: 2.221980e-04	ci right 2.658303e-04	k: 489	n:2010000
FANCD2   2010000 perm   1835 sec   (1095 perm/sec)   p_kst 2.432836e-04   p_cons 9.984935e-01   p_joint 6.119403e-04

Joint ci ratio: 1.114213e-01	ci left: 5.782502e-04	ci right 6.469570e-04	k: 1236	n:2020000
Cons ci ratio: 1.072008e-04	ci left: 9.984376e-01	ci right 9.985451e-01	k: 2016954	n:2020000
KS ci ratio: 1.767057e-01	ci left: 2.220443e-04	ci right 2.655482e-04	k: 491	n:2020000
FANCD2   2020000 perm   1852 sec   (1091 perm/sec)   p_kst 2.430693e-04   p_cons 9.984921e-01   p_joint 6.118812e-04

Joint ci ratio: 1.111520e-01	ci left: 5.782750e-04	ci right 6.468079e-04	k: 1242	n:2030000
Cons ci ratio: 1.069525e-04	ci left: 9.984373e-01	ci right 9.985445e-01	k: 2026938	n:2030000
KS ci ratio: 1.761694e-01	ci left: 2.223631e-04	ci right 2.657831e-04	k: 494	n:2030000
FANCD2   2030000 perm   1868 sec   (1087 perm/sec)   p_kst 2.433498e-04   p_cons 9.984916e-01   p_joint 6.118227e-04

Joint ci ratio: 1.106633e-01	ci left: 5.806830e-04	ci right 6.491789e-04	k: 1253	n:2040000
Cons ci ratio: 1.067579e-04	ci left: 9.984355e-01	ci right 9.985425e-01	k: 2036919	n:2040000
KS ci ratio: 1.752862e-01	ci left: 2.236162e-04	ci right 2.670389e-04	k: 499	n:2040000
FANCD2   2040000 perm   1885 sec   (1082 perm/sec)   p_kst 2.446078e-04   p_cons 9.984897e-01   p_joint 6.142157e-04

Joint ci ratio: 1.103995e-01	ci left: 5.806963e-04	ci right 6.490199e-04	k: 1259	n:2050000
Cons ci ratio: 1.065642e-04	ci left: 9.984337e-01	ci right 9.985405e-01	k: 2046900	n:2050000
KS ci ratio: 1.749367e-01	ci left: 2.234583e-04	ci right 2.667546e-04	k: 501	n:2050000
FANCD2   2050000 perm   1901 sec   (1078 perm/sec)   p_kst 2.443902e-04   p_cons 9.984878e-01   p_joint 6.141463e-04

Joint ci ratio: 1.100941e-01	ci left: 5.811817e-04	ci right 6.493611e-04	k: 1266	n:2060000
Cons ci ratio: 1.062518e-04	ci left: 9.984353e-01	ci right 9.985419e-01	k: 2056888	n:2060000
KS ci ratio: 1.742438e-01	ci left: 2.242304e-04	ci right 2.674862e-04	k: 505	n:2060000
FANCD2   2060000 perm   1917 sec   (1074 perm/sec)   p_kst 2.451456e-04   p_cons 9.984893e-01   p_joint 6.145631e-04

Joint ci ratio: 1.097051e-01	ci left: 5.826024e-04	ci right 6.506913e-04	k: 1275	n:2070000
Cons ci ratio: 1.059590e-04	ci left: 9.984365e-01	ci right 9.985428e-01	k: 2066875	n:2070000
KS ci ratio: 1.739005e-01	ci left: 2.240713e-04	ci right 2.672022e-04	k: 507	n:2070000
FANCD2   2070000 perm   1936 sec   (1069 perm/sec)   p_kst 2.449275e-04   p_cons 9.984903e-01   p_joint 6.159420e-04

Joint ci ratio: 1.094054e-01	ci left: 5.830746e-04	ci right 6.510205e-04	k: 1282	n:2080000
Cons ci ratio: 1.056517e-04	ci left: 9.984381e-01	ci right 9.985441e-01	k: 2076863	n:2080000
KS ci ratio: 1.730508e-01	ci left: 2.252935e-04	ci right 2.684257e-04	k: 512	n:2080000
FANCD2   2080000 perm   1955 sec   (1064 perm/sec)   p_kst 2.461538e-04   p_cons 9.984918e-01   p_joint 6.163462e-04

Joint ci ratio: 1.092778e-01	ci left: 5.816809e-04	ci right 6.493803e-04	k: 1285	n:2090000
Cons ci ratio: 1.053805e-04	ci left: 9.984388e-01	ci right 9.985445e-01	k: 2086849	n:2090000
KS ci ratio: 1.725470e-01	ci left: 2.255889e-04	ci right 2.686388e-04	k: 515	n:2090000
FANCD2   2090000 perm   1973 sec   (1059 perm/sec)   p_kst 2.464115e-04   p_cons 9.984923e-01   p_joint 6.148325e-04

Joint ci ratio: 1.088973e-01	ci left: 5.830798e-04	ci right 6.506906e-04	k: 1294	n:2100000
Cons ci ratio: 1.051445e-04	ci left: 9.984385e-01	ci right 9.985439e-01	k: 2096833	n:2100000
KS ci ratio: 1.718820e-01	ci left: 2.263373e-04	ci right 2.693463e-04	k: 519	n:2100000
FANCD2   2100000 perm   1989 sec   (1056 perm/sec)   p_kst 2.471429e-04   p_cons 9.984919e-01   p_joint 6.161905e-04

Joint ci ratio: 1.083546e-01	ci left: 5.863102e-04	ci right 6.539351e-04	k: 1307	n:2110000
Cons ci ratio: 1.049102e-04	ci left: 9.984382e-01	ci right 9.985434e-01	k: 2106817	n:2110000
KS ci ratio: 1.712247e-01	ci left: 2.270790e-04	ci right 2.700468e-04	k: 523	n:2110000
FANCD2   2110000 perm   2007 sec   (1052 perm/sec)   p_kst 2.478673e-04   p_cons 9.984915e-01   p_joint 6.194313e-04

Joint ci ratio: 1.080247e-01	ci left: 5.872161e-04	ci right 6.547262e-04	k: 1315	n:2120000
Cons ci ratio: 1.046446e-04	ci left: 9.984388e-01	ci right 9.985438e-01	k: 2116803	n:2120000
KS ci ratio: 1.710616e-01	ci left: 2.264593e-04	ci right 2.692649e-04	k: 524	n:2120000
FANCD2   2120000 perm   2024 sec   (1048 perm/sec)   p_kst 2.471698e-04   p_cons 9.984920e-01   p_joint 6.202830e-04

Joint ci ratio: 1.076978e-01	ci left: 5.881138e-04	ci right 6.555095e-04	k: 1323	n:2130000
Cons ci ratio: 1.042833e-04	ci left: 9.984423e-01	ci right 9.985469e-01	k: 2126795	n:2130000
KS ci ratio: 1.700923e-01	ci left: 2.280928e-04	ci right 2.709378e-04	k: 530	n:2130000
FANCD2   2130000 perm   2041 sec   (1044 perm/sec)   p_kst 2.488263e-04   p_cons 9.984953e-01   p_joint 6.211268e-04

Joint ci ratio: 1.075356e-01	ci left: 5.871844e-04	ci right 6.543658e-04	k: 1327	n:2140000
Cons ci ratio: 1.041032e-04	ci left: 9.984406e-01	ci right 9.985450e-01	k: 2136776	n:2140000
KS ci ratio: 1.696138e-01	ci left: 2.283692e-04	ci right 2.711331e-04	k: 533	n:2140000
FANCD2   2140000 perm   2058 sec   (1040 perm/sec)   p_kst 2.490654e-04   p_cons 9.984935e-01   p_joint 6.200935e-04

Joint ci ratio: 1.074952e-01	ci left: 5.849059e-04	ci right 6.517999e-04	k: 1328	n:2150000
Cons ci ratio: 1.038758e-04	ci left: 9.984403e-01	ci right 9.985444e-01	k: 2146760	n:2150000
KS ci ratio: 1.694553e-01	ci left: 2.277524e-04	ci right 2.703569e-04	k: 534	n:2150000
FANCD2   2150000 perm   2075 sec   (1036 perm/sec)   p_kst 2.483721e-04   p_cons 9.984930e-01   p_joint 6.176744e-04

Joint ci ratio: 1.072132e-01	ci left: 5.853517e-04	ci right 6.521100e-04	k: 1335	n:2160000
Cons ci ratio: 1.036657e-04	ci left: 9.984395e-01	ci right 9.985434e-01	k: 2156743	n:2160000
KS ci ratio: 1.688252e-01	ci left: 2.284715e-04	ci right 2.710354e-04	k: 538	n:2160000
FANCD2   2160000 perm   2092 sec   (1033 perm/sec)   p_kst 2.490741e-04   p_cons 9.984921e-01   p_joint 6.180556e-04

Joint ci ratio: 1.070531e-01	ci left: 5.844482e-04	ci right 6.509976e-04	k: 1339	n:2170000
Cons ci ratio: 1.033619e-04	ci left: 9.984415e-01	ci right 9.985452e-01	k: 2166732	n:2170000
KS ci ratio: 1.683573e-01	ci left: 2.287428e-04	ci right 2.712271e-04	k: 541	n:2170000
FANCD2   2170000 perm   2109 sec   (1029 perm/sec)   p_kst 2.493088e-04   p_cons 9.984940e-01   p_joint 6.170507e-04

Joint ci ratio: 1.069734e-01	ci left: 5.826601e-04	ci right 6.489534e-04	k: 1341	n:2180000
Cons ci ratio: 1.031079e-04	ci left: 9.984421e-01	ci right 9.985455e-01	k: 2176718	n:2180000
KS ci ratio: 1.680476e-01	ci left: 2.285723e-04	ci right 2.709390e-04	k: 543	n:2180000
FANCD2   2180000 perm   2126 sec   (1025 perm/sec)   p_kst 2.490826e-04   p_cons 9.984945e-01   p_joint 6.151376e-04

Joint ci ratio: 1.068542e-01	ci left: 5.813327e-04	ci right 6.473967e-04	k: 1344	n:2190000
Cons ci ratio: 1.028713e-04	ci left: 9.984423e-01	ci right 9.985454e-01	k: 2186703	n:2190000
KS ci ratio: 1.680477e-01	ci left: 2.275286e-04	ci right 2.697019e-04	k: 543	n:2190000
FANCD2   2190000 perm   2144 sec   (1022 perm/sec)   p_kst 2.479452e-04   p_cons 9.984945e-01   p_joint 6.136986e-04

Joint ci ratio: 1.065377e-01	ci left: 5.822296e-04	ci right 6.481873e-04	k: 1352	n:2200000
Cons ci ratio: 1.026052e-04	ci left: 9.984433e-01	ci right 9.985462e-01	k: 2196690	n:2200000
KS ci ratio: 1.680478e-01	ci left: 2.264943e-04	ci right 2.684759e-04	k: 543	n:2200000
FANCD2   2200000 perm   2162 sec   (1017 perm/sec)   p_kst 2.468182e-04   p_cons 9.984955e-01   p_joint 6.145455e-04

Joint ci ratio: 1.033033e-01	ci left: 6.174888e-04	ci right 6.851882e-04	k: 1438	n:2210000
Cons ci ratio: 1.023567e-04	ci left: 9.984439e-01	ci right 9.985466e-01	k: 2206676	n:2210000
KS ci ratio: 1.675863e-01	ci left: 2.267699e-04	ci right 2.686755e-04	k: 546	n:2210000
FANCD2   2210000 perm   2183 sec   (1012 perm/sec)   p_kst 2.470588e-04   p_cons 9.984959e-01   p_joint 6.506787e-04

Joint ci ratio: 1.031243e-01	ci left: 6.169014e-04	ci right 6.844122e-04	k: 1443	n:2220000
Cons ci ratio: 1.021252e-04	ci left: 9.984441e-01	ci right 9.985465e-01	k: 2216661	n:2220000
KS ci ratio: 1.674334e-01	ci left: 2.261800e-04	ci right 2.679346e-04	k: 547	n:2220000
FANCD2   2220000 perm   2203 sec   (1008 perm/sec)   p_kst 2.463964e-04   p_cons 9.984959e-01   p_joint 6.500000e-04

Joint ci ratio: 1.028398e-01	ci left: 6.176301e-04	ci right 6.850229e-04	k: 1451	n:2230000
Cons ci ratio: 1.020624e-04	ci left: 9.984392e-01	ci right 9.985416e-01	k: 2226635	n:2230000
KS ci ratio: 1.669769e-01	ci left: 2.264548e-04	ci right 2.681347e-04	k: 550	n:2230000
FANCD2   2230000 perm   2223 sec   (1003 perm/sec)   p_kst 2.466368e-04   p_cons 9.984910e-01   p_joint 6.506726e-04

Joint ci ratio: 1.024874e-01	ci left: 6.192225e-04	ci right 6.865436e-04	k: 1461	n:2240000
Cons ci ratio: 1.018027e-04	ci left: 9.984403e-01	ci right 9.985424e-01	k: 2236622	n:2240000
KS ci ratio: 1.662244e-01	ci left: 2.275829e-04	ci right 2.692627e-04	k: 555	n:2240000
FANCD2   2240000 perm   2243 sec   (998 perm/sec)   p_kst 2.477679e-04   p_cons 9.984920e-01   p_joint 6.522321e-04

Joint ci ratio: 1.022081e-01	ci left: 6.199350e-04	ci right 6.871388e-04	k: 1469	n:2250000
Cons ci ratio: 1.015900e-04	ci left: 9.984400e-01	ci right 9.985418e-01	k: 2246606	n:2250000
KS ci ratio: 1.657777e-01	ci left: 2.278494e-04	ci right 2.694547e-04	k: 558	n:2250000
FANCD2   2250000 perm   2264 sec   (994 perm/sec)   p_kst 2.480000e-04   p_cons 9.984916e-01   p_joint 6.528889e-04

Joint ci ratio: 1.018277e-01	ci left: 6.219350e-04	ci right 6.890897e-04	k: 1480	n:2260000
Cons ci ratio: 1.013785e-04	ci left: 9.984397e-01	ci right 9.985413e-01	k: 2256590	n:2260000
KS ci ratio: 1.650411e-01	ci left: 2.289620e-04	ci right 2.705663e-04	k: 563	n:2260000
FANCD2   2260000 perm   2284 sec   (989 perm/sec)   p_kst 2.491150e-04   p_cons 9.984912e-01   p_joint 6.548673e-04

Joint ci ratio: 1.015879e-01	ci left: 6.222005e-04	ci right 6.892162e-04	k: 1487	n:2270000
Cons ci ratio: 1.011240e-04	ci left: 9.984407e-01	ci right 9.985421e-01	k: 2266577	n:2270000
KS ci ratio: 1.643143e-01	ci left: 2.300652e-04	ci right 2.716677e-04	k: 568	n:2270000
FANCD2   2270000 perm   2305 sec   (985 perm/sec)   p_kst 2.502203e-04   p_cons 9.984921e-01   p_joint 6.550661e-04

Joint ci ratio: 1.013837e-01	ci left: 6.220363e-04	ci right 6.888917e-04	k: 1493	n:2280000
Cons ci ratio: 1.009449e-04	ci left: 9.984395e-01	ci right 9.985408e-01	k: 2276559	n:2280000
KS ci ratio: 1.638828e-01	ci left: 2.303179e-04	ci right 2.718459e-04	k: 571	n:2280000
FANCD2   2280000 perm   2325 sec   (981 perm/sec)   p_kst 2.504386e-04   p_cons 9.984908e-01   p_joint 6.548246e-04

Joint ci ratio: 1.022783e-01	ci left: 6.082552e-04	ci right 6.742409e-04	k: 1467	n:2290000
Cons ci ratio: 1.008540e-04	ci left: 9.984357e-01	ci right 9.985368e-01	k: 2286535	n:2290000
KS ci ratio: 1.633128e-01	ci left: 2.309874e-04	ci right 2.724770e-04	k: 575	n:2290000
FANCD2   2290000 perm   2346 sec   (976 perm/sec)   p_kst 2.510917e-04   p_cons 9.984869e-01   p_joint 6.406114e-04

Joint ci ratio: 1.021046e-01	ci left: 6.077290e-04	ci right 6.735389e-04	k: 1472	n:2300000
Cons ci ratio: 1.006760e-04	ci left: 9.984345e-01	ci right 9.985355e-01	k: 2296517	n:2300000
KS ci ratio: 1.630300e-01	ci left: 2.308172e-04	ci right 2.721974e-04	k: 577	n:2300000
FANCD2   2300000 perm   2367 sec   (972 perm/sec)   p_kst 2.508696e-04   p_cons 9.984857e-01   p_joint 6.400000e-04

Joint ci ratio: 1.017597e-01	ci left: 6.093168e-04	ci right 6.750624e-04	k: 1482	n:2310000
Cons ci ratio: 1.004270e-04	ci left: 9.984356e-01	ci right 9.985363e-01	k: 2306504	n:2310000
KS ci ratio: 1.626085e-01	ci left: 2.310637e-04	ci right 2.723706e-04	k: 580	n:2310000
FANCD2   2310000 perm   2386 sec   (968 perm/sec)   p_kst 2.510823e-04   p_cons 9.984866e-01   p_joint 6.415584e-04

Joint ci ratio: 1.016228e-01	ci left: 6.083707e-04	ci right 6.739207e-04	k: 1486	n:2320000
Cons ci ratio: 1.002512e-04	ci left: 9.984345e-01	ci right 9.985350e-01	k: 2316486	n:2320000
KS ci ratio: 1.623294e-01	ci left: 2.308948e-04	ci right 2.720937e-04	k: 582	n:2320000
FANCD2   2320000 perm   2405 sec   (965 perm/sec)   p_kst 2.508621e-04   p_cons 9.984853e-01   p_joint 6.405172e-04

Joint ci ratio: 1.014865e-01	ci left: 6.074328e-04	ci right 6.727886e-04	k: 1490	n:2330000
Cons ci ratio: 1.001188e-04	ci left: 9.984320e-01	ci right 9.985324e-01	k: 2326465	n:2330000
KS ci ratio: 1.623295e-01	ci left: 2.299038e-04	ci right 2.709259e-04	k: 582	n:2330000
FANCD2   2330000 perm   2426 sec   (960 perm/sec)   p_kst 2.497854e-04   p_cons 9.984828e-01   p_joint 6.394850e-04

Joint ci ratio: 1.011141e-01	ci left: 6.094187e-04	ci right 6.747334e-04	k: 1501	n:2340000
Cons ci ratio: 9.990216e-05	ci left: 9.984322e-01	ci right 9.985324e-01	k: 2336450	n:2340000
KS ci ratio: 1.619134e-01	ci left: 2.301514e-04	ci right 2.711021e-04	k: 585	n:2340000
FANCD2   2340000 perm   2448 sec   (956 perm/sec)   p_kst 2.500000e-04   p_cons 9.984829e-01   p_joint 6.414530e-04

Joint ci ratio: 1.009797e-01	ci left: 6.084845e-04	ci right 6.736073e-04	k: 1505	n:2350000
Cons ci ratio: 9.968692e-05	ci left: 9.984324e-01	ci right 9.985323e-01	k: 2346435	n:2350000
KS ci ratio: 1.616378e-01	ci left: 2.299886e-04	ci right 2.708340e-04	k: 587	n:2350000
FANCD2   2350000 perm   2469 sec   (952 perm/sec)   p_kst 2.497872e-04   p_cons 9.984830e-01   p_joint 6.404255e-04

Joint ci ratio: 1.006793e-01	ci left: 6.096236e-04	ci right 6.746627e-04	k: 1514	n:2360000
Cons ci ratio: 9.945916e-05	ci left: 9.984330e-01	ci right 9.985327e-01	k: 2356421	n:2360000
KS ci ratio: 1.615006e-01	ci left: 2.294207e-04	ci right 2.701272e-04	k: 588	n:2360000
FANCD2   2360000 perm   2490 sec   (948 perm/sec)   p_kst 2.491525e-04   p_cons 9.984835e-01   p_joint 6.415254e-04

Joint ci ratio: 1.004145e-01	ci left: 6.103420e-04	ci right 6.752764e-04	k: 1522	n:2370000
Cons ci ratio: 9.931586e-05	ci left: 9.984310e-01	ci right 9.985306e-01	k: 2366401	n:2370000
KS ci ratio: 1.610909e-01	ci left: 2.296674e-04	ci right 2.703043e-04	k: 591	n:2370000
FANCD2   2370000 perm   2509 sec   (945 perm/sec)   p_kst 2.493671e-04   p_cons 9.984814e-01   p_joint 6.421941e-04

Joint ci ratio: 1.002173e-01	ci left: 6.102353e-04	ci right 6.750233e-04	k: 1528	n:2380000
Cons ci ratio: 9.911811e-05	ci left: 9.984308e-01	ci right 9.985302e-01	k: 2376385	n:2380000
KS ci ratio: 1.606842e-01	ci left: 2.299121e-04	ci right 2.704798e-04	k: 594	n:2380000
FANCD2   2380000 perm   2528 sec   (942 perm/sec)   p_kst 2.495798e-04   p_cons 9.984811e-01   p_joint 6.420168e-04

Joint ci ratio: 1.016580e-01	ci left: 5.901442e-04	ci right 6.537537e-04	k: 1485	n:2390000
Cons ci ratio: 9.893518e-05	ci left: 9.984301e-01	ci right 9.985293e-01	k: 2386368	n:2390000
KS ci ratio: 1.601468e-01	ci left: 2.305566e-04	ci right 2.710888e-04	k: 598	n:2390000
FANCD2   2390000 perm   2547 sec   (939 perm/sec)   p_kst 2.502092e-04   p_cons 9.984803e-01   p_joint 6.213389e-04

Joint ci ratio: 1.014194e-01	ci left: 5.905279e-04	ci right 6.540204e-04	k: 1492	n:2400000
Cons ci ratio: 9.871257e-05	ci left: 9.984307e-01	ci right 9.985297e-01	k: 2396354	n:2400000
KS ci ratio: 1.598801e-01	ci left: 2.303959e-04	ci right 2.708260e-04	k: 600	n:2400000
FANCD2   2400000 perm   2565 sec   (935 perm/sec)   p_kst 2.500000e-04   p_cons 9.984808e-01   p_joint 6.216667e-04

Joint ci ratio: 1.011824e-01	ci left: 5.909086e-04	ci right 6.542848e-04	k: 1499	n:2410000
Cons ci ratio: 9.849146e-05	ci left: 9.984314e-01	ci right 9.985301e-01	k: 2406340	n:2410000
KS ci ratio: 1.594825e-01	ci left: 2.306350e-04	ci right 2.709967e-04	k: 603	n:2410000
FANCD2   2410000 perm   2584 sec   (933 perm/sec)   p_kst 2.502075e-04   p_cons 9.984813e-01   p_joint 6.219917e-04

Joint ci ratio: 1.056077e-01	ci left: 5.389533e-04	ci right 5.994423e-04	k: 1376	n:2420000
Cons ci ratio: 1.023264e-04	ci left: 9.983023e-01	ci right 9.984048e-01	k: 2416017	n:2420000
KS ci ratio: 1.709015e-01	ci left: 1.987811e-04	ci right 2.363162e-04	k: 525	n:2420000
FANCD2   2420000 perm   2604 sec   (929 perm/sec)   p_kst 2.169421e-04   p_cons 9.983541e-01   p_joint 5.685950e-04

Joint ci ratio: 1.054546e-01	ci left: 5.383380e-04	ci right 5.986650e-04	k: 1380	n:2430000
Cons ci ratio: 1.020841e-04	ci left: 9.983034e-01	ci right 9.984057e-01	k: 2426003	n:2430000
KS ci ratio: 1.707393e-01	ci left: 1.983570e-04	ci right 2.357728e-04	k: 526	n:2430000
FANCD2   2430000 perm   2623 sec   (926 perm/sec)   p_kst 2.164609e-04   p_cons 9.983551e-01   p_joint 5.679012e-04

Joint ci ratio: 1.053023e-01	ci left: 5.377278e-04	ci right 5.978940e-04	k: 1384	n:2440000
Cons ci ratio: 1.018181e-04	ci left: 9.983053e-01	ci right 9.984074e-01	k: 2435991	n:2440000
KS ci ratio: 1.705776e-01	ci left: 1.979364e-04	ci right 2.352338e-04	k: 527	n:2440000
FANCD2   2440000 perm   2642 sec   (923 perm/sec)   p_kst 2.159836e-04   p_cons 9.983570e-01   p_joint 5.672131e-04

Joint ci ratio: 1.050749e-01	ci left: 5.379176e-04	ci right 5.979670e-04	k: 1390	n:2450000
Cons ci ratio: 1.016931e-04	ci left: 9.983027e-01	ci right 9.984047e-01	k: 2445968	n:2450000
KS ci ratio: 1.700950e-01	ci left: 1.983008e-04	ci right 2.355503e-04	k: 530	n:2450000
FANCD2   2450000 perm   2662 sec   (920 perm/sec)   p_kst 2.163265e-04   p_cons 9.983543e-01   p_joint 5.673469e-04

Joint ci ratio: 1.048115e-01	ci left: 5.385018e-04	ci right 5.984564e-04	k: 1397	n:2460000
Cons ci ratio: 1.014804e-04	ci left: 9.983030e-01	ci right 9.984047e-01	k: 2455952	n:2460000
KS ci ratio: 1.696165e-01	ci left: 1.986624e-04	ci right 2.358641e-04	k: 533	n:2460000
FANCD2   2460000 perm   2681 sec   (917 perm/sec)   p_kst 2.166667e-04   p_cons 9.983545e-01   p_joint 5.678862e-04

Joint ci ratio: 1.045873e-01	ci left: 5.386872e-04	ci right 5.985262e-04	k: 1403	n:2470000
Cons ci ratio: 1.013813e-04	ci left: 9.982996e-01	ci right 9.984012e-01	k: 2465927	n:2470000
KS ci ratio: 1.689848e-01	ci left: 1.994089e-04	ci right 2.365972e-04	k: 537	n:2470000
FANCD2   2470000 perm   2701 sec   (915 perm/sec)   p_kst 2.174089e-04   p_cons 9.983510e-01   p_joint 5.680162e-04

Joint ci ratio: 1.068978e-01	ci left: 5.129609e-04	ci right 5.712802e-04	k: 1343	n:2480000
Cons ci ratio: 1.011705e-04	ci left: 9.982999e-01	ci right 9.984013e-01	k: 2475911	n:2480000
KS ci ratio: 1.688280e-01	ci left: 1.989910e-04	ci right 2.360634e-04	k: 538	n:2480000
FANCD2   2480000 perm   2720 sec   (912 perm/sec)   p_kst 2.169355e-04   p_cons 9.983512e-01   p_joint 5.415323e-04

Joint ci ratio: 1.066599e-01	ci left: 5.132461e-04	ci right 5.714598e-04	k: 1349	n:2490000
Cons ci ratio: 1.009857e-04	ci left: 9.982994e-01	ci right 9.984006e-01	k: 2485893	n:2490000
KS ci ratio: 1.685156e-01	ci left: 1.989612e-04	ci right 2.359525e-04	k: 540	n:2490000
FANCD2   2490000 perm   2739 sec   (909 perm/sec)   p_kst 2.168675e-04   p_cons 9.983506e-01   p_joint 5.417671e-04

Joint ci ratio: 9.664786e-02	ci left: 6.258122e-04	ci right 6.897536e-04	k: 1643	n:2500000
Cons ci ratio: 1.007407e-04	ci left: 9.983009e-01	ci right 9.984019e-01	k: 2495880	n:2500000
KS ci ratio: 1.680503e-01	ci left: 1.993148e-04	ci right 2.362591e-04	k: 543	n:2500000
FANCD2   2500000 perm   2759 sec   (906 perm/sec)   p_kst 2.172000e-04   p_cons 9.983520e-01   p_joint 6.572000e-04

Joint ci ratio: 9.632605e-02	ci left: 6.275957e-04	ci right 6.914937e-04	k: 1654	n:2510000
Cons ci ratio: 1.005583e-04	ci left: 9.983004e-01	ci right 9.984012e-01	k: 2505862	n:2510000
KS ci ratio: 1.674358e-01	ci left: 2.000474e-04	ci right 2.369783e-04	k: 547	n:2510000
FANCD2   2510000 perm   2779 sec   (903 perm/sec)   p_kst 2.179283e-04   p_cons 9.983514e-01   p_joint 6.589641e-04

Joint ci ratio: 9.606515e-02	ci left: 6.285908e-04	ci right 6.924070e-04	k: 1663	n:2520000
Cons ci ratio: 1.003527e-04	ci left: 9.983007e-01	ci right 9.984013e-01	k: 2515846	n:2520000
KS ci ratio: 1.669793e-01	ci left: 2.003943e-04	ci right 2.372782e-04	k: 550	n:2520000
FANCD2   2520000 perm   2799 sec   (900 perm/sec)   p_kst 2.182540e-04   p_cons 9.983516e-01   p_joint 6.599206e-04

Joint ci ratio: 9.592118e-02	ci left: 6.280350e-04	ci right 6.916940e-04	k: 1668	n:2530000
Cons ci ratio: 1.001483e-04	ci left: 9.983010e-01	ci right 9.984014e-01	k: 2525830	n:2530000
KS ci ratio: 1.665266e-01	ci left: 2.007385e-04	ci right 2.375755e-04	k: 553	n:2530000
FANCD2   2530000 perm   2819 sec   (898 perm/sec)   p_kst 2.185771e-04   p_cons 9.983518e-01   p_joint 6.592885e-04

Joint ci ratio: 9.656024e-02	ci left: 6.171093e-04	ci right 6.801011e-04	k: 1646	n:2540000
Cons ci ratio: 1.000049e-04	ci left: 9.982993e-01	ci right 9.983995e-01	k: 2535809	n:2540000
KS ci ratio: 1.657801e-01	ci left: 2.018348e-04	ci right 2.386905e-04	k: 558	n:2540000
FANCD2   2540000 perm   2839 sec   (895 perm/sec)   p_kst 2.196850e-04   p_cons 9.983500e-01   p_joint 6.480315e-04

Joint ci ratio: 9.187867e-02	ci left: 6.805529e-04	ci right 7.464718e-04	k: 1818	n:2550000
Cons ci ratio: 9.983825e-05	ci left: 9.982984e-01	ci right 9.983985e-01	k: 2545790	n:2550000
KS ci ratio: 1.653370e-01	ci left: 2.021711e-04	ci right 2.389796e-04	k: 561	n:2550000
FANCD2   2550000 perm   2859 sec   (892 perm/sec)   p_kst 2.200000e-04   p_cons 9.983490e-01   p_joint 7.129412e-04

Joint ci ratio: 9.165217e-02	ci left: 6.813295e-04	ci right 7.471522e-04	k: 1827	n:2560000
Cons ci ratio: 9.964881e-05	ci left: 9.982983e-01	ci right 9.983982e-01	k: 2555773	n:2560000
KS ci ratio: 1.650436e-01	ci left: 2.021303e-04	ci right 2.388596e-04	k: 563	n:2560000
FANCD2   2560000 perm   2879 sec   (889 perm/sec)   p_kst 2.199219e-04   p_cons 9.983488e-01   p_joint 7.136719e-04

Joint ci ratio: 9.157713e-02	ci left: 6.798189e-04	ci right 7.454390e-04	k: 1830	n:2570000
Cons ci ratio: 9.948390e-05	ci left: 9.982974e-01	ci right 9.983971e-01	k: 2565754	n:2570000
KS ci ratio: 1.648975e-01	ci left: 2.017168e-04	ci right 2.383353e-04	k: 564	n:2570000
FANCD2   2570000 perm   2900 sec   (886 perm/sec)   p_kst 2.194553e-04   p_cons 9.983479e-01   p_joint 7.120623e-04

Joint ci ratio: 9.338090e-02	ci left: 6.506792e-04	ci right 7.147912e-04	k: 1760	n:2580000
Cons ci ratio: 9.928479e-05	ci left: 9.982978e-01	ci right 9.983972e-01	k: 2575738	n:2580000
KS ci ratio: 1.643168e-01	ci left: 2.024215e-04	ci right 2.390258e-04	k: 568	n:2580000
FANCD2   2580000 perm   2920 sec   (884 perm/sec)   p_kst 2.201550e-04   p_cons 9.983481e-01   p_joint 6.821705e-04

Joint ci ratio: 9.322224e-02	ci left: 6.504294e-04	ci right 7.144021e-04	k: 1766	n:2590000
Cons ci ratio: 9.909846e-05	ci left: 9.982977e-01	ci right 9.983970e-01	k: 2585721	n:2590000
KS ci ratio: 1.640288e-01	ci left: 2.023804e-04	ci right 2.389068e-04	k: 570	n:2590000
FANCD2   2590000 perm   2940 sec   (881 perm/sec)   p_kst 2.200772e-04   p_cons 9.983479e-01   p_joint 6.818533e-04

Joint ci ratio: 9.316961e-02	ci left: 6.486791e-04	ci right 7.124416e-04	k: 1768	n:2600000
Cons ci ratio: 9.880937e-05	ci left: 9.983011e-01	ci right 9.984001e-01	k: 2595713	n:2600000
KS ci ratio: 1.640288e-01	ci left: 2.016020e-04	ci right 2.379879e-04	k: 570	n:2600000
FANCD2   2600000 perm   2960 sec   (878 perm/sec)   p_kst 2.192308e-04   p_cons 9.983512e-01   p_joint 6.800000e-04

Joint ci ratio: 9.303825e-02	ci left: 6.480648e-04	ci right 7.116722e-04	k: 1773	n:2610000
Cons ci ratio: 9.866013e-05	ci left: 9.982998e-01	ci right 9.983987e-01	k: 2605693	n:2610000
KS ci ratio: 1.635996e-01	ci left: 2.019319e-04	ci right 2.382726e-04	k: 573	n:2610000
FANCD2   2610000 perm   2980 sec   (876 perm/sec)   p_kst 2.195402e-04   p_cons 9.983498e-01   p_joint 6.793103e-04

Joint ci ratio: 9.269911e-02	ci left: 6.504379e-04	ci right 7.140329e-04	k: 1786	n:2620000
Cons ci ratio: 9.837462e-05	ci left: 9.983032e-01	ci right 9.984018e-01	k: 2615685	n:2620000
KS ci ratio: 1.628916e-01	ci left: 2.029916e-04	ci right 2.393494e-04	k: 578	n:2620000
FANCD2   2620000 perm   3001 sec   (873 perm/sec)   p_kst 2.206107e-04   p_cons 9.983531e-01   p_joint 6.816794e-04

Joint ci ratio: 9.251808e-02	ci left: 6.505647e-04	ci right 7.140412e-04	k: 1793	n:2630000
Cons ci ratio: 9.810256e-05	ci left: 9.983062e-01	ci right 9.984045e-01	k: 2625676	n:2630000
KS ci ratio: 1.624712e-01	ci left: 2.033140e-04	ci right 2.396264e-04	k: 581	n:2630000
FANCD2   2630000 perm   3021 sec   (870 perm/sec)   p_kst 2.209125e-04   p_cons 9.983559e-01   p_joint 6.817490e-04

Joint ci ratio: 9.233810e-02	ci left: 6.506907e-04	ci right 7.140492e-04	k: 1800	n:2640000
Cons ci ratio: 9.796803e-05	ci left: 9.983045e-01	ci right 9.984027e-01	k: 2635655	n:2640000
KS ci ratio: 1.623319e-01	ci left: 2.029073e-04	ci right 2.391129e-04	k: 582	n:2640000
FANCD2   2640000 perm   3042 sec   (868 perm/sec)   p_kst 2.204545e-04   p_cons 9.983542e-01   p_joint 6.818182e-04

Joint ci ratio: 9.208276e-02	ci left: 6.519218e-04	ci right 7.152153e-04	k: 1810	n:2650000
Cons ci ratio: 9.774413e-05	ci left: 9.983059e-01	ci right 9.984039e-01	k: 2645642	n:2650000
KS ci ratio: 1.617778e-01	ci left: 2.035898e-04	ci right 2.397812e-04	k: 586	n:2650000
FANCD2   2650000 perm   3063 sec   (865 perm/sec)   p_kst 2.211321e-04   p_cons 9.983555e-01   p_joint 6.830189e-04

Joint ci ratio: 9.198128e-02	ci left: 6.509401e-04	ci right 7.140649e-04	k: 1814	n:2660000
Cons ci ratio: 9.751054e-05	ci left: 9.983077e-01	ci right 9.984055e-01	k: 2655630	n:2660000
KS ci ratio: 1.616402e-01	ci left: 2.031852e-04	ci right 2.392709e-04	k: 587	n:2660000
FANCD2   2660000 perm   3084 sec   (863 perm/sec)   p_kst 2.206767e-04   p_cons 9.983571e-01   p_joint 6.819549e-04

Joint ci ratio: 9.182964e-02	ci left: 6.506977e-04	ci right 7.136893e-04	k: 1820	n:2670000
Cons ci ratio: 9.733407e-05	ci left: 9.983076e-01	ci right 9.984052e-01	k: 2665613	n:2670000
KS ci ratio: 1.615029e-01	ci left: 2.027836e-04	ci right 2.387644e-04	k: 588	n:2670000
FANCD2   2670000 perm   3105 sec   (860 perm/sec)   p_kst 2.202247e-04   p_cons 9.983569e-01   p_joint 6.816479e-04

Joint ci ratio: 9.160351e-02	ci left: 6.515509e-04	ci right 7.144615e-04	k: 1829	n:2680000
Cons ci ratio: 9.714750e-05	ci left: 9.983079e-01	ci right 9.984052e-01	k: 2675597	n:2680000
KS ci ratio: 1.610932e-01	ci left: 2.031011e-04	ci right 2.390381e-04	k: 591	n:2680000
FANCD2   2680000 perm   3126 sec   (857 perm/sec)   p_kst 2.205224e-04   p_cons 9.983571e-01   p_joint 6.824627e-04

Joint ci ratio: 9.147866e-02	ci left: 6.509450e-04	ci right 7.137068e-04	k: 1834	n:2690000
Cons ci ratio: 9.694003e-05	ci left: 9.983089e-01	ci right 9.984060e-01	k: 2685583	n:2690000
KS ci ratio: 1.609573e-01	ci left: 2.027029e-04	ci right 2.385362e-04	k: 592	n:2690000
FANCD2   2690000 perm   3147 sec   (855 perm/sec)   p_kst 2.200743e-04   p_cons 9.983580e-01   p_joint 6.817844e-04

Joint ci ratio: 9.147877e-02	ci left: 6.485340e-04	ci right 7.110635e-04	k: 1834	n:2700000
Cons ci ratio: 9.685403e-05	ci left: 9.983057e-01	ci right 9.984028e-01	k: 2695558	n:2700000
KS ci ratio: 1.606866e-01	ci left: 2.026631e-04	ci right 2.384232e-04	k: 594	n:2700000
FANCD2   2700000 perm   3169 sec   (852 perm/sec)   p_kst 2.200000e-04   p_cons 9.983548e-01   p_joint 6.792593e-04

Joint ci ratio: 9.135443e-02	ci left: 6.479437e-04	ci right 7.103268e-04	k: 1839	n:2710000
Cons ci ratio: 9.667022e-05	ci left: 9.983060e-01	ci right 9.984029e-01	k: 2705542	n:2710000
KS ci ratio: 1.604172e-01	ci left: 2.026236e-04	ci right 2.383111e-04	k: 596	n:2710000
FANCD2   2710000 perm   3190 sec   (850 perm/sec)   p_kst 2.199262e-04   p_cons 9.983550e-01   p_joint 6.785978e-04

Joint ci ratio: 9.115645e-02	ci left: 6.484356e-04	ci right 7.107236e-04	k: 1847	n:2720000
Cons ci ratio: 9.646585e-05	ci left: 9.983070e-01	ci right 9.984037e-01	k: 2715528	n:2720000
KS ci ratio: 1.598824e-01	ci left: 2.032903e-04	ci right 2.389644e-04	k: 600	n:2720000
FANCD2   2720000 perm   3211 sec   (847 perm/sec)   p_kst 2.205882e-04   p_cons 9.983559e-01   p_joint 6.790441e-04

Joint ci ratio: 9.110725e-02	ci left: 6.467763e-04	ci right 7.088695e-04	k: 1849	n:2730000
Cons ci ratio: 9.631645e-05	ci left: 9.983062e-01	ci right 9.984027e-01	k: 2725509	n:2730000
KS ci ratio: 1.598825e-01	ci left: 2.025456e-04	ci right 2.380891e-04	k: 600	n:2730000
FANCD2   2730000 perm   3233 sec   (844 perm/sec)   p_kst 2.197802e-04   p_cons 9.983549e-01   p_joint 6.772894e-04

Joint ci ratio: 9.086195e-02	ci left: 6.479824e-04	ci right 7.100150e-04	k: 1859	n:2740000
Cons ci ratio: 9.615704e-05	ci left: 9.983057e-01	ci right 9.984020e-01	k: 2735491	n:2740000
KS ci ratio: 1.594849e-01	ci left: 2.028576e-04	ci right 2.383587e-04	k: 603	n:2740000
FANCD2   2740000 perm   3254 sec   (842 perm/sec)   p_kst 2.200730e-04   p_cons 9.983544e-01   p_joint 6.784672e-04

Joint ci ratio: 9.074010e-02	ci left: 6.474030e-04	ci right 7.092926e-04	k: 1864	n:2750000
Cons ci ratio: 9.600902e-05	ci left: 9.983048e-01	ci right 9.984010e-01	k: 2745472	n:2750000
KS ci ratio: 1.590903e-01	ci left: 2.031673e-04	ci right 2.386263e-04	k: 606	n:2750000
FANCD2   2750000 perm   3276 sec   (840 perm/sec)   p_kst 2.203636e-04   p_cons 9.983535e-01   p_joint 6.778182e-04

Joint ci ratio: 9.042539e-02	ci left: 6.496608e-04	ci right 7.115395e-04	k: 1877	n:2760000
Cons ci ratio: 9.590387e-05	ci left: 9.983025e-01	ci right 9.983986e-01	k: 2755449	n:2760000
KS ci ratio: 1.588289e-01	ci left: 2.031270e-04	ci right 2.385152e-04	k: 608	n:2760000
FANCD2   2760000 perm   3297 sec   (837 perm/sec)   p_kst 2.202899e-04   p_cons 9.983511e-01   p_joint 6.800725e-04

Joint ci ratio: 9.018555e-02	ci left: 6.508441e-04	ci right 7.126624e-04	k: 1887	n:2770000
Cons ci ratio: 9.578838e-05	ci left: 9.983006e-01	ci right 9.983966e-01	k: 2765427	n:2770000
KS ci ratio: 1.584391e-01	ci left: 2.034338e-04	ci right 2.387801e-04	k: 611	n:2770000
FANCD2   2770000 perm   3318 sec   (835 perm/sec)   p_kst 2.205776e-04   p_cons 9.983491e-01   p_joint 6.812274e-04

Joint ci ratio: 8.994760e-02	ci left: 6.520190e-04	ci right 7.137769e-04	k: 1897	n:2780000
Cons ci ratio: 9.561060e-05	ci left: 9.983009e-01	ci right 9.983967e-01	k: 2775411	n:2780000
KS ci ratio: 1.579238e-01	ci left: 2.040839e-04	ci right 2.394169e-04	k: 615	n:2780000
FANCD2   2780000 perm   3340 sec   (832 perm/sec)   p_kst 2.212230e-04   p_cons 9.983493e-01   p_joint 6.823741e-04

Joint ci ratio: 8.975862e-02	ci left: 6.524850e-04	ci right 7.141504e-04	k: 1905	n:2790000
Cons ci ratio: 9.551678e-05	ci left: 9.982982e-01	ci right 9.983939e-01	k: 2785387	n:2790000
KS ci ratio: 1.576680e-01	ci left: 2.040409e-04	ci right 2.393039e-04	k: 617	n:2790000
FANCD2   2790000 perm   3362 sec   (830 perm/sec)   p_kst 2.211470e-04   p_cons 9.983466e-01   p_joint 6.827957e-04

Joint ci ratio: 8.971164e-02	ci left: 6.508529e-04	ci right 7.123302e-04	k: 1907	n:2800000
Cons ci ratio: 9.531989e-05	ci left: 9.982992e-01	ci right 9.983947e-01	k: 2795373	n:2800000
KS ci ratio: 1.575407e-01	ci left: 2.036553e-04	ci right 2.388205e-04	k: 618	n:2800000
FANCD2   2800000 perm   3384 sec   (827 perm/sec)   p_kst 2.207143e-04   p_cons 9.983475e-01   p_joint 6.810714e-04

Joint ci ratio: 8.140364e-02	ci left: 7.909837e-04	ci right 8.584504e-04	k: 2316	n:2810000
Cons ci ratio: 9.510366e-05	ci left: 9.983009e-01	ci right 9.983962e-01	k: 2805361	n:2810000
KS ci ratio: 1.570340e-01	ci left: 2.042980e-04	ci right 2.394501e-04	k: 622	n:2810000
FANCD2   2810000 perm   3406 sec   (825 perm/sec)   p_kst 2.213523e-04   p_cons 9.983491e-01   p_joint 8.241993e-04

Joint ci ratio: 8.129848e-02	ci left: 7.902632e-04	ci right 8.575772e-04	k: 2322	n:2820000
Cons ci ratio: 9.502151e-05	ci left: 9.982980e-01	ci right 9.983932e-01	k: 2815336	n:2820000
KS ci ratio: 1.567826e-01	ci left: 2.042549e-04	ci right 2.393380e-04	k: 624	n:2820000
FANCD2   2820000 perm   3428 sec   (823 perm/sec)   p_kst 2.212766e-04   p_cons 9.983461e-01   p_joint 8.234043e-04

Joint ci ratio: 8.114144e-02	ci left: 7.905864e-04	ci right 8.577916e-04	k: 2331	n:2830000
Cons ci ratio: 9.487841e-05	ci left: 9.982972e-01	ci right 9.983923e-01	k: 2825317	n:2830000
KS ci ratio: 1.565323e-01	ci left: 2.042122e-04	ci right 2.392267e-04	k: 626	n:2830000
FANCD2   2830000 perm   3451 sec   (820 perm/sec)   p_kst 2.212014e-04   p_cons 9.983452e-01   p_joint 8.236749e-04

Joint ci ratio: 8.103729e-02	ci left: 7.898724e-04	ci right 8.569268e-04	k: 2337	n:2840000
Cons ci ratio: 9.470566e-05	ci left: 9.982975e-01	ci right 9.983924e-01	k: 2835301	n:2840000
KS ci ratio: 1.564077e-01	ci left: 2.038314e-04	ci right 2.387502e-04	k: 627	n:2840000
FANCD2   2840000 perm   3473 sec   (818 perm/sec)   p_kst 2.207746e-04   p_cons 9.983454e-01   p_joint 8.228873e-04

Joint ci ratio: 8.088175e-02	ci left: 7.901949e-04	ci right 8.571418e-04	k: 2346	n:2850000
Cons ci ratio: 9.449368e-05	ci left: 9.982992e-01	ci right 9.983938e-01	k: 2845289	n:2850000
KS ci ratio: 1.559119e-01	ci left: 2.044649e-04	ci right 2.393708e-04	k: 631	n:2850000
FANCD2   2850000 perm   3495 sec   (815 perm/sec)   p_kst 2.214035e-04   p_cons 9.983470e-01   p_joint 8.231579e-04

Joint ci ratio: 8.069284e-02	ci left: 7.912005e-04	ci right 8.580686e-04	k: 2357	n:2860000
Cons ci ratio: 9.433300e-05	ci left: 9.982991e-01	ci right 9.983936e-01	k: 2855272	n:2860000
KS ci ratio: 1.554208e-01	ci left: 2.050941e-04	ci right 2.399869e-04	k: 635	n:2860000
FANCD2   2860000 perm   3518 sec   (813 perm/sec)   p_kst 2.220280e-04   p_cons 9.983469e-01   p_joint 8.241259e-04

Joint ci ratio: 8.147476e-02	ci left: 7.730819e-04	ci right 8.390819e-04	k: 2312	n:2870000
Cons ci ratio: 9.420295e-05	ci left: 9.982979e-01	ci right 9.983923e-01	k: 2865252	n:2870000
KS ci ratio: 1.551770e-01	ci left: 2.050493e-04	ci right 2.398746e-04	k: 637	n:2870000
FANCD2   2870000 perm   3540 sec   (811 perm/sec)   p_kst 2.219512e-04   p_cons 9.983456e-01   p_joint 8.055749e-04

Joint ci ratio: 8.129918e-02	ci left: 7.737991e-04	ci right 8.397113e-04	k: 2322	n:2880000
Cons ci ratio: 9.404373e-05	ci left: 9.982979e-01	ci right 9.983921e-01	k: 2875235	n:2880000
KS ci ratio: 1.548134e-01	ci left: 2.053386e-04	ci right 2.401237e-04	k: 640	n:2880000
FANCD2   2880000 perm   3562 sec   (809 perm/sec)   p_kst 2.222222e-04   p_cons 9.983455e-01   p_joint 8.062500e-04

Joint ci ratio: 8.115955e-02	ci left: 7.738335e-04	ci right 8.396301e-04	k: 2330	n:2890000
Cons ci ratio: 9.381649e-05	ci left: 9.983002e-01	ci right 9.983942e-01	k: 2885225	n:2890000
KS ci ratio: 1.544524e-01	ci left: 2.056260e-04	ci right 2.403711e-04	k: 643	n:2890000
FANCD2   2890000 perm   3585 sec   (806 perm/sec)   p_kst 2.224913e-04   p_cons 9.983478e-01   p_joint 8.062284e-04

Joint ci ratio: 8.103798e-02	ci left: 7.735300e-04	ci right 8.391975e-04	k: 2337	n:2900000
Cons ci ratio: 9.356132e-05	ci left: 9.983037e-01	ci right 9.983974e-01	k: 2895218	n:2900000
KS ci ratio: 1.543327e-01	ci left: 2.052484e-04	ci right 2.399003e-04	k: 644	n:2900000
FANCD2   2900000 perm   3611 sec   (803 perm/sec)   p_kst 2.220690e-04   p_cons 9.983510e-01   p_joint 8.058621e-04

Joint ci ratio: 8.112495e-02	ci left: 7.691884e-04	ci right 8.345607e-04	k: 2332	n:2910000
Cons ci ratio: 9.346382e-05	ci left: 9.983015e-01	ci right 9.983951e-01	k: 2905195	n:2910000
KS ci ratio: 1.542132e-01	ci left: 2.048735e-04	ci right 2.394328e-04	k: 645	n:2910000
FANCD2   2910000 perm   3637 sec   (800 perm/sec)   p_kst 2.216495e-04   p_cons 9.983488e-01   p_joint 8.013746e-04

Joint ci ratio: 8.098622e-02	ci left: 7.692384e-04	ci right 8.344979e-04	k: 2340	n:2920000
Cons ci ratio: 9.330833e-05	ci left: 9.983014e-01	ci right 9.983949e-01	k: 2915178	n:2920000
KS ci ratio: 1.538563e-01	ci left: 2.051597e-04	ci right 2.396798e-04	k: 648	n:2920000
FANCD2   2920000 perm   3662 sec   (797 perm/sec)   p_kst 2.219178e-04   p_cons 9.983486e-01   p_joint 8.013699e-04

Joint ci ratio: 8.091717e-02	ci left: 7.679505e-04	ci right 8.330426e-04	k: 2344	n:2930000
Cons ci ratio: 9.313434e-05	ci left: 9.983020e-01	ci right 9.983953e-01	k: 2925163	n:2930000
KS ci ratio: 1.537380e-01	ci left: 2.047876e-04	ci right 2.392162e-04	k: 649	n:2930000
FANCD2   2930000 perm   3689 sec   (794 perm/sec)   p_kst 2.215017e-04   p_cons 9.983491e-01   p_joint 8.000000e-04

Joint ci ratio: 8.072801e-02	ci left: 7.690043e-04	ci right 8.340262e-04	k: 2355	n:2940000
Cons ci ratio: 9.299009e-05	ci left: 9.983016e-01	ci right 9.983947e-01	k: 2935145	n:2940000
KS ci ratio: 1.535020e-01	ci left: 2.047452e-04	ci right 2.391090e-04	k: 651	n:2940000
FANCD2   2940000 perm   3715 sec   (791 perm/sec)   p_kst 2.214286e-04   p_cons 9.983486e-01   p_joint 8.010204e-04

Joint ci ratio: 8.060837e-02	ci left: 7.687225e-04	ci right 8.336198e-04	k: 2362	n:2950000
Cons ci ratio: 9.294185e-05	ci left: 9.982977e-01	ci right 9.983908e-01	k: 2945117	n:2950000
KS ci ratio: 1.531500e-01	ci left: 2.050291e-04	ci right 2.393544e-04	k: 654	n:2950000
FANCD2   2950000 perm   3742 sec   (788 perm/sec)   p_kst 2.216949e-04   p_cons 9.983447e-01   p_joint 8.006780e-04

Joint ci ratio: 8.052326e-02	ci left: 7.677806e-04	ci right 8.325267e-04	k: 2367	n:2960000
Cons ci ratio: 9.280789e-05	ci left: 9.982969e-01	ci right 9.983899e-01	k: 2955098	n:2960000
KS ci ratio: 1.530333e-01	ci left: 2.046613e-04	ci right 2.388965e-04	k: 655	n:2960000
FANCD2   2960000 perm   3768 sec   (786 perm/sec)   p_kst 2.212838e-04   p_cons 9.983439e-01   p_joint 7.996622e-04

Joint ci ratio: 8.042147e-02	ci left: 7.671751e-04	ci right 8.317844e-04	k: 2373	n:2970000
Cons ci ratio: 9.264620e-05	ci left: 9.982972e-01	ci right 9.983900e-01	k: 2965082	n:2970000
KS ci ratio: 1.528006e-01	ci left: 2.046198e-04	ci right 2.387913e-04	k: 657	n:2970000
FANCD2   2970000 perm   3794 sec   (783 perm/sec)   p_kst 2.212121e-04   p_cons 9.983441e-01   p_joint 7.989899e-04

Joint ci ratio: 8.018530e-02	ci left: 7.692043e-04	ci right 8.337855e-04	k: 2387	n:2980000
Cons ci ratio: 9.248534e-05	ci left: 9.982975e-01	ci right 9.983901e-01	k: 2975066	n:2980000
KS ci ratio: 1.522232e-01	ci left: 2.055470e-04	ci right 2.397318e-04	k: 662	n:2980000
FANCD2   2980000 perm   3820 sec   (780 perm/sec)   p_kst 2.221477e-04   p_cons 9.983443e-01   p_joint 8.010067e-04

Joint ci ratio: 8.005132e-02	ci left: 7.692537e-04	ci right 8.337261e-04	k: 2395	n:2990000
Cons ci ratio: 9.231598e-05	ci left: 9.982981e-01	ci right 9.983906e-01	k: 2985051	n:2990000
KS ci ratio: 1.517661e-01	ci left: 2.061465e-04	ci right 2.403187e-04	k: 666	n:2990000
FANCD2   2990000 perm   3846 sec   (777 perm/sec)   p_kst 2.227425e-04   p_cons 9.983448e-01   p_joint 8.010033e-04

Joint ci ratio: 7.996797e-02	ci left: 7.683228e-04	ci right 8.326470e-04	k: 2400	n:3000000
Cons ci ratio: 9.215684e-05	ci left: 9.982984e-01	ci right 9.983907e-01	k: 2995035	n:3000000
KS ci ratio: 1.516524e-01	ci left: 2.057800e-04	ci right 2.398636e-04	k: 667	n:3000000
FANCD2   3000000 perm   3873 sec   (775 perm/sec)   p_kst 2.223333e-04   p_cons 9.983450e-01   p_joint 8.000000e-04

Joint ci ratio: 7.981850e-02	ci left: 7.687006e-04	ci right 8.329305e-04	k: 2409	n:3010000
Cons ci ratio: 9.199851e-05	ci left: 9.982986e-01	ci right 9.983908e-01	k: 3005019	n:3010000
KS ci ratio: 1.512004e-01	ci left: 2.063749e-04	ci right 2.404459e-04	k: 671	n:3010000
FANCD2   3010000 perm   3900 sec   (772 perm/sec)   p_kst 2.229236e-04   p_cons 9.983452e-01   p_joint 8.003322e-04

Joint ci ratio: 8.054092e-02	ci left: 7.522020e-04	ci right 8.156489e-04	k: 2366	n:3020000
Cons ci ratio: 9.185939e-05	ci left: 9.982982e-01	ci right 9.983902e-01	k: 3015001	n:3020000
KS ci ratio: 1.510880e-01	ci left: 2.060101e-04	ci right 2.399934e-04	k: 672	n:3020000
FANCD2   3020000 perm   3927 sec   (769 perm/sec)   p_kst 2.225166e-04   p_cons 9.983447e-01   p_joint 7.834437e-04

Joint ci ratio: 8.040516e-02	ci left: 7.523066e-04	ci right 8.156504e-04	k: 2374	n:3030000
Cons ci ratio: 9.172090e-05	ci left: 9.982978e-01	ci right 9.983897e-01	k: 3024983	n:3030000
KS ci ratio: 1.509759e-01	ci left: 2.056478e-04	ci right 2.395438e-04	k: 673	n:3030000
FANCD2   3030000 perm   3954 sec   (766 perm/sec)   p_kst 2.221122e-04   p_cons 9.983442e-01   p_joint 7.834983e-04

Joint ci ratio: 8.030381e-02	ci left: 7.517660e-04	ci right 8.149807e-04	k: 2380	n:3040000
Cons ci ratio: 9.157392e-05	ci left: 9.982977e-01	ci right 9.983895e-01	k: 3034966	n:3040000
KS ci ratio: 1.508641e-01	ci left: 2.052879e-04	ci right 2.390972e-04	k: 674	n:3040000
FANCD2   3040000 perm   3981 sec   (764 perm/sec)   p_kst 2.217105e-04   p_cons 9.983441e-01   p_joint 7.828947e-04

Joint ci ratio: 8.021966e-02	ci left: 7.509076e-04	ci right 8.139809e-04	k: 2385	n:3050000
Cons ci ratio: 9.144577e-05	ci left: 9.982970e-01	ci right 9.983886e-01	k: 3044947	n:3050000
KS ci ratio: 1.506411e-01	ci left: 2.052458e-04	ci right 2.389937e-04	k: 676	n:3050000
FANCD2   3050000 perm   4007 sec   (761 perm/sec)   p_kst 2.216393e-04   p_cons 9.983433e-01   p_joint 7.819672e-04

Joint ci ratio: 8.010226e-02	ci left: 7.506954e-04	ci right 8.136542e-04	k: 2392	n:3060000
Cons ci ratio: 9.132715e-05	ci left: 9.982959e-01	ci right 9.983874e-01	k: 3054927	n:3060000
KS ci ratio: 1.505300e-01	ci left: 2.048895e-04	ci right 2.385518e-04	k: 677	n:3060000
FANCD2   3060000 perm   4034 sec   (758 perm/sec)   p_kst 2.212418e-04   p_cons 9.983422e-01   p_joint 7.816993e-04

Joint ci ratio: 7.986889e-02	ci left: 7.527192e-04	ci right 8.156553e-04	k: 2406	n:3070000
Cons ci ratio: 9.119100e-05	ci left: 9.982955e-01	ci right 9.983869e-01	k: 3064909	n:3070000
KS ci ratio: 1.499779e-01	ci left: 2.057896e-04	ci right 2.394646e-04	k: 682	n:3070000
FANCD2   3070000 perm   4062 sec   (756 perm/sec)   p_kst 2.221498e-04   p_cons 9.983417e-01   p_joint 7.837134e-04

Joint ci ratio: 7.981922e-02	ci left: 7.512298e-04	ci right 8.140006e-04	k: 2409	n:3080000
Cons ci ratio: 9.109115e-05	ci left: 9.982938e-01	ci right 9.983851e-01	k: 3074887	n:3080000
KS ci ratio: 1.498683e-01	ci left: 2.054339e-04	ci right 2.390240e-04	k: 683	n:3080000
FANCD2   3080000 perm   4090 sec   (753 perm/sec)   p_kst 2.217532e-04   p_cons 9.983399e-01   p_joint 7.821429e-04

Joint ci ratio: 7.968707e-02	ci left: 7.513361e-04	ci right 8.140069e-04	k: 2417	n:3090000
Cons ci ratio: 9.092940e-05	ci left: 9.982944e-01	ci right 9.983855e-01	k: 3084872	n:3090000
KS ci ratio: 1.497589e-01	ci left: 2.050806e-04	ci right 2.385862e-04	k: 684	n:3090000
FANCD2   3090000 perm   4117 sec   (751 perm/sec)   p_kst 2.213592e-04   p_cons 9.983405e-01   p_joint 7.822006e-04

Joint ci ratio: 7.958841e-02	ci left: 7.508093e-04	ci right 8.133551e-04	k: 2423	n:3100000
Cons ci ratio: 9.072430e-05	ci left: 9.982967e-01	ci right 9.983876e-01	k: 3094862	n:3100000
KS ci ratio: 1.497589e-01	ci left: 2.044190e-04	ci right 2.378166e-04	k: 684	n:3100000
FANCD2   3100000 perm   4144 sec   (748 perm/sec)   p_kst 2.206452e-04   p_cons 9.983426e-01   p_joint 7.816129e-04

Joint ci ratio: 7.947375e-02	ci left: 7.506012e-04	ci right 8.130353e-04	k: 2430	n:3110000
Cons ci ratio: 9.059963e-05	ci left: 9.982960e-01	ci right 9.983867e-01	k: 3104843	n:3110000
KS ci ratio: 1.495408e-01	ci left: 2.043807e-04	ci right 2.377190e-04	k: 686	n:3110000
FANCD2   3110000 perm   4172 sec   (745 perm/sec)   p_kst 2.205788e-04   p_cons 9.983418e-01   p_joint 7.813505e-04

Joint ci ratio: 7.939218e-02	ci left: 7.497661e-04	ci right 8.120639e-04	k: 2435	n:3120000
Cons ci ratio: 9.045796e-05	ci left: 9.982959e-01	ci right 9.983865e-01	k: 3114826	n:3120000
KS ci ratio: 1.494321e-01	ci left: 2.040342e-04	ci right 2.372896e-04	k: 687	n:3120000
FANCD2   3120000 perm   4200 sec   (743 perm/sec)   p_kst 2.201923e-04   p_cons 9.983417e-01   p_joint 7.804487e-04

Joint ci ratio: 7.926214e-02	ci left: 7.498759e-04	ci right 8.120760e-04	k: 2443	n:3130000
Cons ci ratio: 9.028209e-05	ci left: 9.982971e-01	ci right 9.983876e-01	k: 3124813	n:3130000
KS ci ratio: 1.493236e-01	ci left: 2.036899e-04	ci right 2.368629e-04	k: 688	n:3130000
FANCD2   3130000 perm   4227 sec   (740 perm/sec)   p_kst 2.198083e-04   p_cons 9.983428e-01   p_joint 7.805112e-04

Joint ci ratio: 7.919740e-02	ci left: 7.487364e-04	ci right 8.107889e-04	k: 2447	n:3140000
Cons ci ratio: 9.016791e-05	ci left: 9.982961e-01	ci right 9.983864e-01	k: 3134793	n:3140000
KS ci ratio: 1.492154e-01	ci left: 2.033477e-04	ci right 2.364389e-04	k: 689	n:3140000
FANCD2   3140000 perm   4255 sec   (738 perm/sec)   p_kst 2.194268e-04   p_cons 9.983417e-01   p_joint 7.792994e-04

Joint ci ratio: 8.015345e-02	ci left: 7.283133e-04	ci right 7.894359e-04	k: 2389	n:3150000
Cons ci ratio: 9.004551e-05	ci left: 9.982954e-01	ci right 9.983856e-01	k: 3144774	n:3150000
KS ci ratio: 1.487847e-01	ci left: 2.039247e-04	ci right 2.370055e-04	k: 693	n:3150000
FANCD2   3150000 perm   4283 sec   (736 perm/sec)   p_kst 2.200000e-04   p_cons 9.983410e-01   p_joint 7.584127e-04

Joint ci ratio: 7.996959e-02	ci left: 7.294198e-04	ci right 7.904883e-04	k: 2400	n:3160000
Cons ci ratio: 8.993216e-05	ci left: 9.982944e-01	ci right 9.983845e-01	k: 3154754	n:3160000
KS ci ratio: 1.483578e-01	ci left: 2.044981e-04	ci right 2.375683e-04	k: 697	n:3160000
FANCD2   3160000 perm   4311 sec   (733 perm/sec)   p_kst 2.205696e-04   p_cons 9.983399e-01   p_joint 7.594937e-04

Joint ci ratio: 7.980354e-02	ci left: 7.302104e-04	ci right 7.912122e-04	k: 2410	n:3170000
Cons ci ratio: 8.978504e-05	ci left: 9.982946e-01	ci right 9.983846e-01	k: 3164738	n:3170000
KS ci ratio: 1.481457e-01	ci left: 2.044605e-04	ci right 2.374732e-04	k: 699	n:3170000
FANCD2   3170000 perm   4339 sec   (731 perm/sec)   p_kst 2.205047e-04   p_cons 9.983401e-01   p_joint 7.602524e-04

Joint ci ratio: 8.102352e-02	ci left: 7.057275e-04	ci right 7.656279e-04	k: 2338	n:3180000
Cons ci ratio: 8.966414e-05	ci left: 9.982939e-01	ci right 9.983838e-01	k: 3174719	n:3180000
KS ci ratio: 1.480400e-01	ci left: 2.041204e-04	ci right 2.370525e-04	k: 700	n:3180000
FANCD2   3180000 perm   4364 sec   (729 perm/sec)   p_kst 2.201258e-04   p_cons 9.983393e-01   p_joint 7.352201e-04

Joint ci ratio: 8.086807e-02	ci left: 7.062794e-04	ci right 7.661062e-04	k: 2347	n:3190000
Cons ci ratio: 8.952679e-05	ci left: 9.982939e-01	ci right 9.983836e-01	k: 3184702	n:3190000
KS ci ratio: 1.478293e-01	ci left: 2.040843e-04	ci right 2.369595e-04	k: 702	n:3190000
FANCD2   3190000 perm   4389 sec   (727 perm/sec)   p_kst 2.200627e-04   p_cons 9.983392e-01   p_joint 7.357367e-04

Joint ci ratio: 8.074780e-02	ci left: 7.062156e-04	ci right 7.659438e-04	k: 2354	n:3200000
Cons ci ratio: 8.934795e-05	ci left: 9.982954e-01	ci right 9.983849e-01	k: 3194690	n:3200000
KS ci ratio: 1.477243e-01	ci left: 2.037475e-04	ci right 2.365431e-04	k: 703	n:3200000
FANCD2   3200000 perm   4414 sec   (725 perm/sec)   p_kst 2.196875e-04   p_cons 9.983406e-01   p_joint 7.356250e-04

Joint ci ratio: 8.156652e-02	ci left: 6.896707e-04	ci right 7.486191e-04	k: 2307	n:3210000
Cons ci ratio: 8.928749e-05	ci left: 9.982925e-01	ci right 9.983820e-01	k: 3204664	n:3210000
KS ci ratio: 1.473064e-01	ci left: 2.043128e-04	ci right 2.370983e-04	k: 707	n:3210000
FANCD2   3210000 perm   4439 sec   (723 perm/sec)   p_kst 2.202492e-04   p_cons 9.983377e-01   p_joint 7.186916e-04

Joint ci ratio: 8.140792e-02	ci left: 6.902670e-04	ci right 7.491462e-04	k: 2316	n:3220000
Cons ci ratio: 8.914352e-05	ci left: 9.982928e-01	ci right 9.983821e-01	k: 3214648	n:3220000
KS ci ratio: 1.468919e-01	ci left: 2.048749e-04	ci right 2.376499e-04	k: 711	n:3220000
FANCD2   3220000 perm   4464 sec   (721 perm/sec)   p_kst 2.208075e-04   p_cons 9.983379e-01   p_joint 7.192547e-04

Joint ci ratio: 8.126774e-02	ci left: 6.905563e-04	ci right 7.493540e-04	k: 2324	n:3230000
Cons ci ratio: 8.900854e-05	ci left: 9.982927e-01	ci right 9.983819e-01	k: 3224631	n:3230000
KS ci ratio: 1.465834e-01	ci left: 2.051353e-04	ci right 2.378770e-04	k: 714	n:3230000
FANCD2   3230000 perm   4488 sec   (720 perm/sec)   p_kst 2.210526e-04   p_cons 9.983378e-01   p_joint 7.195046e-04

Joint ci ratio: 8.116309e-02	ci left: 6.902392e-04	ci right 7.489306e-04	k: 2330	n:3240000
Cons ci ratio: 8.888243e-05	ci left: 9.982924e-01	ci right 9.983814e-01	k: 3234613	n:3240000
KS ci ratio: 1.461751e-01	ci left: 2.056915e-04	ci right 2.384225e-04	k: 718	n:3240000
FANCD2   3240000 perm   4513 sec   (718 perm/sec)   p_kst 2.216049e-04   p_cons 9.983373e-01   p_joint 7.191358e-04

Joint ci ratio: 8.109358e-02	ci left: 6.893212e-04	ci right 7.478820e-04	k: 2334	n:3250000
Cons ci ratio: 8.877330e-05	ci left: 9.982914e-01	ci right 9.983803e-01	k: 3244593	n:3250000
KS ci ratio: 1.461751e-01	ci left: 2.050586e-04	ci right 2.376889e-04	k: 718	n:3250000
FANCD2   3250000 perm   4542 sec   (716 perm/sec)   p_kst 2.209231e-04   p_cons 9.983363e-01   p_joint 7.181538e-04

Joint ci ratio: 8.153162e-02	ci left: 6.796938e-04	ci right 7.377634e-04	k: 2309	n:3260000
Cons ci ratio: 8.864817e-05	ci left: 9.982910e-01	ci right 9.983798e-01	k: 3254575	n:3260000
KS ci ratio: 1.460736e-01	ci left: 2.047251e-04	ci right 2.372778e-04	k: 719	n:3260000
FANCD2   3260000 perm   4570 sec   (713 perm/sec)   p_kst 2.205521e-04   p_cons 9.983359e-01   p_joint 7.082822e-04

Joint ci ratio: 8.146116e-02	ci left: 6.788135e-04	ci right 7.367554e-04	k: 2313	n:3270000
Cons ci ratio: 8.852356e-05	ci left: 9.982907e-01	ci right 9.983794e-01	k: 3264557	n:3270000
KS ci ratio: 1.459723e-01	ci left: 2.043937e-04	ci right 2.368691e-04	k: 720	n:3270000
FANCD2   3270000 perm   4600 sec   (711 perm/sec)   p_kst 2.201835e-04   p_cons 9.983355e-01   p_joint 7.073394e-04

Joint ci ratio: 8.226564e-02	ci left: 6.633051e-04	ci right 7.205092e-04	k: 2268	n:3280000
Cons ci ratio: 8.835082e-05	ci left: 9.982922e-01	ci right 9.983807e-01	k: 3274545	n:3280000
KS ci ratio: 1.456696e-01	ci left: 2.046518e-04	ci right 2.370949e-04	k: 723	n:3280000
FANCD2   3280000 perm   4629 sec   (709 perm/sec)   p_kst 2.204268e-04   p_cons 9.983369e-01   p_joint 6.914634e-04

Joint ci ratio: 8.212098e-02	ci left: 6.636706e-04	ci right 7.208008e-04	k: 2276	n:3290000
Cons ci ratio: 8.817095e-05	ci left: 9.982940e-01	ci right 9.983823e-01	k: 3284534	n:3290000
KS ci ratio: 1.455691e-01	ci left: 2.043226e-04	ci right 2.366893e-04	k: 724	n:3290000
FANCD2   3290000 perm   4657 sec   (706 perm/sec)   p_kst 2.200608e-04   p_cons 9.983386e-01   p_joint 6.917933e-04

Joint ci ratio: 8.195914e-02	ci left: 6.643308e-04	ci right 7.213997e-04	k: 2285	n:3300000
Cons ci ratio: 8.804837e-05	ci left: 9.982936e-01	ci right 9.983818e-01	k: 3294516	n:3300000
KS ci ratio: 1.452688e-01	ci left: 2.045795e-04	ci right 2.369142e-04	k: 727	n:3300000
FANCD2   3300000 perm   4683 sec   (705 perm/sec)   p_kst 2.203030e-04   p_cons 9.983382e-01   p_joint 6.924242e-04

Joint ci ratio: 8.186968e-02	ci left: 6.638034e-04	ci right 7.207618e-04	k: 2290	n:3310000
Cons ci ratio: 8.788628e-05	ci left: 9.982948e-01	ci right 9.983829e-01	k: 3304503	n:3310000
KS ci ratio: 1.450697e-01	ci left: 2.045437e-04	ci right 2.368246e-04	k: 729	n:3310000
FANCD2   3310000 perm   4709 sec   (703 perm/sec)   p_kst 2.202417e-04   p_cons 9.983393e-01   p_joint 6.918429e-04

Joint ci ratio: 8.176270e-02	ci left: 6.635742e-04	ci right 7.204350e-04	k: 2296	n:3320000
Cons ci ratio: 8.777287e-05	ci left: 9.982942e-01	ci right 9.983821e-01	k: 3314484	n:3320000
KS ci ratio: 1.446738e-01	ci left: 2.050887e-04	ci right 2.373598e-04	k: 733	n:3320000
FANCD2   3320000 perm   4734 sec   (701 perm/sec)   p_kst 2.207831e-04   p_cons 9.983386e-01   p_joint 6.915663e-04

Joint ci ratio: 8.165613e-02	ci left: 6.633465e-04	ci right 7.201102e-04	k: 2302	n:3330000
Cons ci ratio: 8.760434e-05	ci left: 9.982956e-01	ci right 9.983834e-01	k: 3324472	n:3330000
KS ci ratio: 1.443791e-01	ci left: 2.053412e-04	ci right 2.375804e-04	k: 736	n:3330000
FANCD2   3330000 perm   4760 sec   (700 perm/sec)   p_kst 2.210210e-04   p_cons 9.983399e-01   p_joint 6.912913e-04

Joint ci ratio: 8.149702e-02	ci left: 6.640001e-04	ci right 7.207037e-04	k: 2311	n:3340000
Cons ci ratio: 8.746833e-05	ci left: 9.982959e-01	ci right 9.983835e-01	k: 3334456	n:3340000
KS ci ratio: 1.438917e-01	ci left: 2.061694e-04	ci right 2.384200e-04	k: 741	n:3340000
FANCD2   3340000 perm   4786 sec   (698 perm/sec)   p_kst 2.218563e-04   p_cons 9.983401e-01   p_joint 6.919162e-04

Joint ci ratio: 8.140906e-02	ci left: 6.634801e-04	ci right 7.200753e-04	k: 2316	n:3350000
Cons ci ratio: 8.727788e-05	ci left: 9.982982e-01	ci right 9.983857e-01	k: 3344447	n:3350000
KS ci ratio: 1.437949e-01	ci left: 2.058418e-04	ci right 2.380176e-04	k: 742	n:3350000
FANCD2   3350000 perm   4812 sec   (696 perm/sec)   p_kst 2.214925e-04   p_cons 9.983424e-01   p_joint 6.913433e-04

Joint ci ratio: 8.119900e-02	ci left: 6.650043e-04	ci right 7.215762e-04	k: 2328	n:3360000
Cons ci ratio: 8.711202e-05	ci left: 9.982997e-01	ci right 9.983869e-01	k: 3354435	n:3360000
KS ci ratio: 1.433134e-01	ci left: 2.066638e-04	ci right 2.388507e-04	k: 747	n:3360000
FANCD2   3360000 perm   4837 sec   (695 perm/sec)   p_kst 2.223214e-04   p_cons 9.983437e-01   p_joint 6.928571e-04

Joint ci ratio: 8.104254e-02	ci left: 6.656475e-04	ci right 7.221598e-04	k: 2337	n:3370000
Cons ci ratio: 8.701727e-05	ci left: 9.982984e-01	ci right 9.983856e-01	k: 3364414	n:3370000
KS ci ratio: 1.432177e-01	ci left: 2.063366e-04	ci right 2.384493e-04	k: 748	n:3370000
FANCD2   3370000 perm   4863 sec   (693 perm/sec)   p_kst 2.219585e-04   p_cons 9.983424e-01   p_joint 6.934718e-04

Joint ci ratio: 7.637899e-02	ci left: 7.489510e-04	ci right 8.087143e-04	k: 2631	n:3380000
Cons ci ratio: 8.690726e-05	ci left: 9.982978e-01	ci right 9.983848e-01	k: 3374395	n:3380000
KS ci ratio: 1.428368e-01	ci left: 2.068673e-04	ci right 2.389696e-04	k: 752	n:3380000
FANCD2   3380000 perm   4889 sec   (691 perm/sec)   p_kst 2.224852e-04   p_cons 9.983417e-01   p_joint 7.784024e-04

Joint ci ratio: 7.620542e-02	ci left: 7.502140e-04	ci right 8.099361e-04	k: 2643	n:3390000
Cons ci ratio: 8.679764e-05	ci left: 9.982971e-01	ci right 9.983840e-01	k: 3384376	n:3390000
KS ci ratio: 1.424589e-01	ci left: 2.073949e-04	ci right 2.394867e-04	k: 756	n:3390000
FANCD2   3390000 perm   4915 sec   (690 perm/sec)   p_kst 2.230088e-04   p_cons 9.983410e-01   p_joint 7.796460e-04

Joint ci ratio: 7.606169e-02	ci left: 7.508927e-04	ci right 8.105510e-04	k: 2653	n:3400000
Cons ci ratio: 8.667304e-05	ci left: 9.982970e-01	ci right 9.983839e-01	k: 3394359	n:3400000
KS ci ratio: 1.419907e-01	ci left: 2.082031e-04	ci right 2.403052e-04	k: 761	n:3400000
FANCD2   3400000 perm   4941 sec   (688 perm/sec)   p_kst 2.238235e-04   p_cons 9.983409e-01   p_joint 7.802941e-04

Joint ci ratio: 7.589027e-02	ci left: 7.521429e-04	ci right 8.117599e-04	k: 2665	n:3410000
Cons ci ratio: 8.653364e-05	ci left: 9.982976e-01	ci right 9.983843e-01	k: 3404344	n:3410000
KS ci ratio: 1.415271e-01	ci left: 2.090069e-04	ci right 2.411187e-04	k: 766	n:3410000
FANCD2   3410000 perm   4968 sec   (686 perm/sec)   p_kst 2.246334e-04   p_cons 9.983413e-01   p_joint 7.815249e-04

Joint ci ratio: 7.758339e-02	ci left: 7.169626e-04	ci right 7.751162e-04	k: 2550	n:3420000
Cons ci ratio: 7.633838e-05	ci left: 9.986663e-01	ci right 9.987428e-01	k: 3415571	n:3420000
KS ci ratio: 1.412511e-01	ci left: 2.092419e-04	ci right 2.413219e-04	k: 769	n:3420000
FANCD2   3420000 perm   4994 sec   (685 perm/sec)   p_kst 2.248538e-04   p_cons 9.987050e-01   p_joint 7.456140e-04

Joint ci ratio: 7.749233e-02	ci left: 7.165876e-04	ci right 7.746396e-04	k: 2556	n:3430000
Cons ci ratio: 7.621883e-05	ci left: 9.986666e-01	ci right 9.987430e-01	k: 3425559	n:3430000
KS ci ratio: 1.409767e-01	ci left: 2.094756e-04	ci right 2.415238e-04	k: 772	n:3430000
FANCD2   3430000 perm   5021 sec   (683 perm/sec)   p_kst 2.250729e-04   p_cons 9.987052e-01   p_joint 7.451895e-04

Joint ci ratio: 7.753794e-02	ci left: 7.136493e-04	ci right 7.714987e-04	k: 2553	n:3440000
Cons ci ratio: 7.611695e-05	ci left: 9.986664e-01	ci right 9.987427e-01	k: 3435545	n:3440000
KS ci ratio: 1.407947e-01	ci left: 2.094276e-04	ci right 2.414236e-04	k: 774	n:3440000
FANCD2   3440000 perm   5048 sec   (681 perm/sec)   p_kst 2.250000e-04   p_cons 9.987049e-01   p_joint 7.421512e-04

Joint ci ratio: 7.744704e-02	ci left: 7.132862e-04	ci right 7.710353e-04	k: 2559	n:3450000
Cons ci ratio: 7.604951e-05	ci left: 9.986649e-01	ci right 9.987412e-01	k: 3445527	n:3450000
KS ci ratio: 1.404327e-01	ci left: 2.099392e-04	ci right 2.419240e-04	k: 778	n:3450000
FANCD2   3450000 perm   5074 sec   (680 perm/sec)   p_kst 2.255072e-04   p_cons 9.987035e-01   p_joint 7.417391e-04

Joint ci ratio: 7.743199e-02	ci left: 7.115081e-04	ci right 7.691016e-04	k: 2560	n:3460000
Cons ci ratio: 7.593980e-05	ci left: 9.986650e-01	ci right 9.987411e-01	k: 3455514	n:3460000
KS ci ratio: 1.404327e-01	ci left: 2.093324e-04	ci right 2.412248e-04	k: 778	n:3460000
FANCD2   3460000 perm   5101 sec   (678 perm/sec)   p_kst 2.248555e-04   p_cons 9.987035e-01   p_joint 7.398844e-04

Joint ci ratio: 7.728123e-02	ci left: 7.122837e-04	ci right 7.698227e-04	k: 2570	n:3470000
Cons ci ratio: 7.585588e-05	ci left: 9.986642e-01	ci right 9.987402e-01	k: 3465498	n:3470000
KS ci ratio: 1.398950e-01	ci left: 2.103976e-04	ci right 2.423193e-04	k: 784	n:3470000
FANCD2   3470000 perm   5127 sec   (677 perm/sec)   p_kst 2.259366e-04   p_cons 9.987026e-01   p_joint 7.406340e-04

Joint ci ratio: 7.725125e-02	ci left: 7.108005e-04	ci right 7.681964e-04	k: 2572	n:3480000
Cons ci ratio: 7.573021e-05	ci left: 9.986648e-01	ci right 9.987407e-01	k: 3475487	n:3480000
KS ci ratio: 1.398950e-01	ci left: 2.097930e-04	ci right 2.416230e-04	k: 784	n:3480000
FANCD2   3480000 perm   5154 sec   (675 perm/sec)   p_kst 2.252874e-04   p_cons 9.987032e-01   p_joint 7.390805e-04

Joint ci ratio: 7.726636e-02	ci left: 7.084828e-04	ci right 7.657032e-04	k: 2571	n:3490000
Cons ci ratio: 7.556331e-05	ci left: 9.986669e-01	ci right 9.987426e-01	k: 3485481	n:3490000
KS ci ratio: 1.396284e-01	ci left: 2.100215e-04	ci right 2.418203e-04	k: 787	n:3490000
FANCD2   3490000 perm   5181 sec   (674 perm/sec)   p_kst 2.255014e-04   p_cons 9.987052e-01   p_joint 7.366762e-04

Joint ci ratio: 7.713151e-02	ci left: 7.089804e-04	ci right 7.661366e-04	k: 2580	n:3500000
Cons ci ratio: 7.548069e-05	ci left: 9.986660e-01	ci right 9.987417e-01	k: 3495465	n:3500000
KS ci ratio: 1.393634e-01	ci left: 2.102486e-04	ci right 2.420164e-04	k: 790	n:3500000
FANCD2   3500000 perm   5207 sec   (672 perm/sec)   p_kst 2.257143e-04   p_cons 9.987043e-01   p_joint 7.371429e-04

Joint ci ratio: 7.772145e-02	ci left: 6.960643e-04	ci right 7.526278e-04	k: 2541	n:3510000
Cons ci ratio: 7.534023e-05	ci left: 9.986672e-01	ci right 9.987428e-01	k: 3505456	n:3510000
KS ci ratio: 1.392754e-01	ci left: 2.099246e-04	ci right 2.416217e-04	k: 791	n:3510000
FANCD2   3510000 perm   5234 sec   (671 perm/sec)   p_kst 2.253561e-04   p_cons 9.987054e-01   p_joint 7.239316e-04

Joint ci ratio: 7.761466e-02	ci left: 6.960369e-04	ci right 7.525170e-04	k: 2548	n:3520000
Cons ci ratio: 7.520050e-05	ci left: 9.986684e-01	ci right 9.987438e-01	k: 3515447	n:3520000
KS ci ratio: 1.390124e-01	ci left: 2.101508e-04	ci right 2.418172e-04	k: 794	n:3520000
FANCD2   3520000 perm   5261 sec   (669 perm/sec)   p_kst 2.255682e-04   p_cons 9.987065e-01   p_joint 7.238636e-04

Joint ci ratio: 7.744769e-02	ci left: 6.971208e-04	ci right 7.535617e-04	k: 2559	n:3530000
Cons ci ratio: 7.507796e-05	ci left: 9.986690e-01	ci right 9.987443e-01	k: 3525436	n:3530000
KS ci ratio: 1.385772e-01	ci left: 2.109227e-04	ci right 2.425978e-04	k: 799	n:3530000
FANCD2   3530000 perm   5288 sec   (668 perm/sec)   p_kst 2.263456e-04   p_cons 9.987071e-01   p_joint 7.249292e-04

Joint ci ratio: 7.734203e-02	ci left: 6.970907e-04	ci right 7.534487e-04	k: 2566	n:3540000
Cons ci ratio: 7.497240e-05	ci left: 9.986691e-01	ci right 9.987442e-01	k: 3535423	n:3540000
KS ci ratio: 1.383181e-01	ci left: 2.111450e-04	ci right 2.427893e-04	k: 802	n:3540000
FANCD2   3540000 perm   5315 sec   (666 perm/sec)   p_kst 2.265537e-04   p_cons 9.987071e-01   p_joint 7.248588e-04

Joint ci ratio: 7.723679e-02	ci left: 6.970608e-04	ci right 7.533362e-04	k: 2573	n:3550000
Cons ci ratio: 7.490809e-05	ci left: 9.986677e-01	ci right 9.987428e-01	k: 3545405	n:3550000
KS ci ratio: 1.383181e-01	ci left: 2.105502e-04	ci right 2.421054e-04	k: 802	n:3550000
FANCD2   3550000 perm   5342 sec   (665 perm/sec)   p_kst 2.259155e-04   p_cons 9.987056e-01   p_joint 7.247887e-04

Joint ci ratio: 7.716191e-02	ci left: 6.964801e-04	ci right 7.526517e-04	k: 2578	n:3560000
Cons ci ratio: 7.484386e-05	ci left: 9.986663e-01	ci right 9.987413e-01	k: 3555387	n:3560000
KS ci ratio: 1.382321e-01	ci left: 2.102300e-04	ci right 2.417159e-04	k: 803	n:3560000
FANCD2   3560000 perm   5369 sec   (663 perm/sec)   p_kst 2.255618e-04   p_cons 9.987042e-01   p_joint 7.241573e-04

Joint ci ratio: 7.696810e-02	ci left: 6.981005e-04	ci right 7.542550e-04	k: 2591	n:3570000
Cons ci ratio: 7.470693e-05	ci left: 9.986675e-01	ci right 9.987424e-01	k: 3565378	n:3570000
KS ci ratio: 1.378895e-01	ci left: 2.107229e-04	ci right 2.421980e-04	k: 807	n:3570000
FANCD2   3570000 perm   5397 sec   (662 perm/sec)   p_kst 2.260504e-04   p_cons 9.987053e-01   p_joint 7.257703e-04

Joint ci ratio: 7.699792e-02	ci left: 6.956026e-04	ci right 7.515788e-04	k: 2589	n:3580000
Cons ci ratio: 7.460292e-05	ci left: 9.986675e-01	ci right 9.987423e-01	k: 3575365	n:3580000
KS ci ratio: 1.378043e-01	ci left: 2.104039e-04	ci right 2.418104e-04	k: 808	n:3580000
FANCD2   3580000 perm   5424 sec   (660 perm/sec)   p_kst 2.256983e-04   p_cons 9.987053e-01   p_joint 7.231844e-04

Joint ci ratio: 7.687927e-02	ci left: 6.958505e-04	ci right 7.517565e-04	k: 2597	n:3590000
Cons ci ratio: 7.448330e-05	ci left: 9.986681e-01	ci right 9.987428e-01	k: 3585354	n:3590000
KS ci ratio: 1.374648e-01	ci left: 2.108937e-04	ci right 2.422894e-04	k: 812	n:3590000
FANCD2   3590000 perm   5451 sec   (659 perm/sec)   p_kst 2.261838e-04   p_cons 9.987058e-01   p_joint 7.233983e-04

Joint ci ratio: 7.679066e-02	ci left: 6.955522e-04	ci right 7.513670e-04	k: 2603	n:3600000
Cons ci ratio: 7.437223e-05	ci left: 9.986684e-01	ci right 9.987430e-01	k: 3595342	n:3600000
KS ci ratio: 1.372960e-01	ci left: 2.108444e-04	ci right 2.421910e-04	k: 814	n:3600000
FANCD2   3600000 perm   5478 sec   (657 perm/sec)   p_kst 2.261111e-04   p_cons 9.987061e-01   p_joint 7.230556e-04

Joint ci ratio: 7.710249e-02	ci left: 6.879201e-04	ci right 7.433567e-04	k: 2582	n:3610000
Cons ci ratio: 7.423778e-05	ci left: 9.986696e-01	ci right 9.987440e-01	k: 3605333	n:3610000
KS ci ratio: 1.371279e-01	ci left: 2.107953e-04	ci right 2.420931e-04	k: 816	n:3610000
FANCD2   3610000 perm   5506 sec   (656 perm/sec)   p_kst 2.260388e-04   p_cons 9.987072e-01   p_joint 7.152355e-04

Joint ci ratio: 7.698335e-02	ci left: 6.881872e-04	ci right 7.435557e-04	k: 2590	n:3620000
Cons ci ratio: 7.411986e-05	ci left: 9.986702e-01	ci right 9.987445e-01	k: 3615322	n:3620000
KS ci ratio: 1.367102e-01	ci left: 2.115469e-04	ci right 2.428528e-04	k: 821	n:3620000
FANCD2   3620000 perm   5533 sec   (654 perm/sec)   p_kst 2.267956e-04   p_cons 9.987077e-01   p_joint 7.154696e-04

Joint ci ratio: 7.683519e-02	ci left: 6.889932e-04	ci right 7.443151e-04	k: 2600	n:3630000
Cons ci ratio: 7.398668e-05	ci left: 9.986713e-01	ci right 9.987455e-01	k: 3625313	n:3630000
KS ci ratio: 1.365442e-01	ci left: 2.114963e-04	ci right 2.427536e-04	k: 823	n:3630000
FANCD2   3630000 perm   5561 sec   (653 perm/sec)   p_kst 2.267218e-04   p_cons 9.987088e-01   p_joint 7.162534e-04

Joint ci ratio: 7.674674e-02	ci left: 6.887171e-04	ci right 7.439503e-04	k: 2606	n:3640000
Cons ci ratio: 7.389352e-05	ci left: 9.986711e-01	ci right 9.987452e-01	k: 3635299	n:3640000
KS ci ratio: 1.364614e-01	ci left: 2.111806e-04	ci right 2.423708e-04	k: 824	n:3640000
FANCD2   3640000 perm   5588 sec   (651 perm/sec)   p_kst 2.263736e-04   p_cons 9.987085e-01   p_joint 7.159341e-04

Joint ci ratio: 7.792218e-02	ci left: 6.658732e-04	ci right 7.201294e-04	k: 2528	n:3650000
Cons ci ratio: 7.378504e-05	ci left: 9.986714e-01	ci right 9.987453e-01	k: 3645287	n:3650000
KS ci ratio: 1.362963e-01	ci left: 2.111312e-04	ci right 2.422734e-04	k: 826	n:3650000
FANCD2   3650000 perm   5616 sec   (650 perm/sec)   p_kst 2.263014e-04   p_cons 9.987088e-01   p_joint 6.926027e-04

Joint ci ratio: 7.779921e-02	ci left: 6.661971e-04	ci right 7.203902e-04	k: 2536	n:3660000
Cons ci ratio: 7.370824e-05	ci left: 9.986706e-01	ci right 9.987445e-01	k: 3655271	n:3660000
KS ci ratio: 1.360497e-01	ci left: 2.113461e-04	ci right 2.424590e-04	k: 829	n:3660000
FANCD2   3660000 perm   5645 sec   (648 perm/sec)   p_kst 2.265027e-04   p_cons 9.987079e-01   p_joint 6.928962e-04

Joint ci ratio: 7.773798e-02	ci left: 6.654506e-04	ci right 7.195384e-04	k: 2540	n:3670000
Cons ci ratio: 7.362389e-05	ci left: 9.986701e-01	ci right 9.987439e-01	k: 3665256	n:3670000
KS ci ratio: 1.359679e-01	ci left: 2.110335e-04	ci right 2.420801e-04	k: 830	n:3670000
FANCD2   3670000 perm   5673 sec   (647 perm/sec)   p_kst 2.261580e-04   p_cons 9.987074e-01   p_joint 6.920981e-04

Joint ci ratio: 7.772275e-02	ci left: 6.639087e-04	ci right 7.178602e-04	k: 2541	n:3680000
Cons ci ratio: 7.352434e-05	ci left: 9.986701e-01	ci right 9.987438e-01	k: 3675243	n:3680000
KS ci ratio: 1.357231e-01	ci left: 2.112475e-04	ci right 2.422652e-04	k: 833	n:3680000
FANCD2   3680000 perm   5701 sec   (646 perm/sec)   p_kst 2.263587e-04   p_cons 9.987073e-01   p_joint 6.904891e-04

Joint ci ratio: 7.763120e-02	ci left: 6.637040e-04	ci right 7.175724e-04	k: 2547	n:3690000
Cons ci ratio: 7.338665e-05	ci left: 9.986715e-01	ci right 9.987451e-01	k: 3685235	n:3690000
KS ci ratio: 1.354796e-01	ci left: 2.114605e-04	ci right 2.424492e-04	k: 836	n:3690000
FANCD2   3690000 perm   5729 sec   (644 perm/sec)   p_kst 2.265583e-04   p_cons 9.987087e-01   p_joint 6.902439e-04

Joint ci ratio: 7.747928e-02	ci left: 6.645605e-04	ci right 7.183881e-04	k: 2557	n:3700000
Cons ci ratio: 7.328806e-05	ci left: 9.986715e-01	ci right 9.987450e-01	k: 3695222	n:3700000
KS ci ratio: 1.351570e-01	ci left: 2.119334e-04	ci right 2.429116e-04	k: 840	n:3700000
FANCD2   3700000 perm   5757 sec   (643 perm/sec)   p_kst 2.270270e-04   p_cons 9.987086e-01   p_joint 6.910811e-04

Joint ci ratio: 7.740369e-02	ci left: 6.640908e-04	ci right 7.178255e-04	k: 2562	n:3710000
Cons ci ratio: 7.318221e-05	ci left: 9.986718e-01	ci right 9.987452e-01	k: 3705210	n:3710000
KS ci ratio: 1.349966e-01	ci left: 2.118830e-04	ci right 2.428142e-04	k: 842	n:3710000
FANCD2   3710000 perm   5786 sec   (641 perm/sec)   p_kst 2.269542e-04   p_cons 9.987089e-01   p_joint 6.905660e-04

Joint ci ratio: 7.723807e-02	ci left: 6.652054e-04	ci right 7.189100e-04	k: 2573	n:3720000
Cons ci ratio: 7.306159e-05	ci left: 9.986727e-01	ci right 9.987459e-01	k: 3715200	n:3720000
KS ci ratio: 1.346774e-01	ci left: 2.123525e-04	ci right 2.432729e-04	k: 846	n:3720000
FANCD2   3720000 perm   5814 sec   (640 perm/sec)   p_kst 2.274194e-04   p_cons 9.987097e-01   p_joint 6.916667e-04

Joint ci ratio: 7.716319e-02	ci left: 6.647367e-04	ci right 7.183490e-04	k: 2578	n:3730000
Cons ci ratio: 7.297947e-05	ci left: 9.986722e-01	ci right 9.987453e-01	k: 3725185	n:3730000
KS ci ratio: 1.346775e-01	ci left: 2.117831e-04	ci right 2.426207e-04	k: 846	n:3730000
FANCD2   3730000 perm   5843 sec   (638 perm/sec)   p_kst 2.268097e-04   p_cons 9.987091e-01   p_joint 6.911528e-04

Joint ci ratio: 7.704377e-02	ci left: 6.650571e-04	ci right 7.186086e-04	k: 2586	n:3740000
Cons ci ratio: 7.287496e-05	ci left: 9.986724e-01	ci right 9.987455e-01	k: 3735173	n:3740000
KS ci ratio: 1.342817e-01	ci left: 2.125088e-04	ci right 2.433539e-04	k: 851	n:3740000
FANCD2   3740000 perm   5871 sec   (637 perm/sec)   p_kst 2.275401e-04   p_cons 9.987094e-01   p_joint 6.914439e-04

Joint ci ratio: 7.689527e-02	ci left: 6.658990e-04	ci right 7.194102e-04	k: 2596	n:3750000
Cons ci ratio: 7.278593e-05	ci left: 9.986722e-01	ci right 9.987452e-01	k: 3745159	n:3750000
KS ci ratio: 1.339675e-01	ci left: 2.129730e-04	ci right 2.438074e-04	k: 855	n:3750000
FANCD2   3750000 perm   5900 sec   (636 perm/sec)   p_kst 2.280000e-04   p_cons 9.987091e-01   p_joint 6.922667e-04

Joint ci ratio: 7.676235e-02	ci left: 6.664756e-04	ci right 7.199365e-04	k: 2605	n:3760000
Cons ci ratio: 7.268224e-05	ci left: 9.986725e-01	ci right 9.987453e-01	k: 3755147	n:3760000
KS ci ratio: 1.338894e-01	ci left: 2.126636e-04	ci right 2.434338e-04	k: 856	n:3760000
FANCD2   3760000 perm   5928 sec   (634 perm/sec)   p_kst 2.276596e-04   p_cons 9.987093e-01   p_joint 6.928191e-04

Joint ci ratio: 7.667414e-02	ci left: 6.662687e-04	ci right 7.196489e-04	k: 2611	n:3770000
Cons ci ratio: 7.260139e-05	ci left: 9.986720e-01	ci right 9.987448e-01	k: 3765132	n:3770000
KS ci ratio: 1.337334e-01	ci left: 2.126123e-04	ci right 2.433363e-04	k: 858	n:3770000
FANCD2   3770000 perm   5957 sec   (633 perm/sec)   p_kst 2.275862e-04   p_cons 9.987088e-01   p_joint 6.925729e-04

Joint ci ratio: 7.657161e-02	ci left: 6.663225e-04	ci right 7.196324e-04	k: 2618	n:3780000
Cons ci ratio: 7.249105e-05	ci left: 9.986725e-01	ci right 9.987452e-01	k: 3775121	n:3780000
KS ci ratio: 1.335780e-01	ci left: 2.125612e-04	ci right 2.432394e-04	k: 860	n:3780000
FANCD2   3780000 perm   5986 sec   (631 perm/sec)   p_kst 2.275132e-04   p_cons 9.987093e-01   p_joint 6.925926e-04

Joint ci ratio: 7.649864e-02	ci left: 6.658584e-04	ci right 7.190781e-04	k: 2623	n:3790000
Cons ci ratio: 7.242565e-05	ci left: 9.986715e-01	ci right 9.987441e-01	k: 3785104	n:3790000
KS ci ratio: 1.334231e-01	ci left: 2.125105e-04	ci right 2.431429e-04	k: 862	n:3790000
FANCD2   3790000 perm   6015 sec   (630 perm/sec)   p_kst 2.274406e-04   p_cons 9.987082e-01   p_joint 6.920844e-04

Joint ci ratio: 7.635325e-02	ci left: 6.666874e-04	ci right 7.198677e-04	k: 2633	n:3800000
Cons ci ratio: 7.232349e-05	ci left: 9.986718e-01	ci right 9.987443e-01	k: 3795092	n:3800000
KS ci ratio: 1.328852e-01	ci left: 2.137320e-04	ci right 2.444065e-04	k: 869	n:3800000
FANCD2   3800000 perm   6044 sec   (629 perm/sec)   p_kst 2.286842e-04   p_cons 9.987084e-01   p_joint 6.928947e-04

Joint ci ratio: 7.626645e-02	ci left: 6.664823e-04	ci right 7.195831e-04	k: 2639	n:3810000
Cons ci ratio: 7.222177e-05	ci left: 9.986721e-01	ci right 9.987445e-01	k: 3805080	n:3810000
KS ci ratio: 1.327327e-01	ci left: 2.136785e-04	ci right 2.443073e-04	k: 871	n:3810000
FANCD2   3810000 perm   6073 sec   (627 perm/sec)   p_kst 2.286089e-04   p_cons 9.987087e-01   p_joint 6.926509e-04

Joint ci ratio: 7.648426e-02	ci left: 6.608858e-04	ci right 7.136978e-04	k: 2624	n:3820000
Cons ci ratio: 7.209119e-05	ci left: 9.986734e-01	ci right 9.987457e-01	k: 3815072	n:3820000
KS ci ratio: 1.325050e-01	ci left: 2.138784e-04	ci right 2.444792e-04	k: 874	n:3820000
FANCD2   3820000 perm   6102 sec   (626 perm/sec)   p_kst 2.287958e-04   p_cons 9.987099e-01   p_joint 6.869110e-04

Joint ci ratio: 7.636797e-02	ci left: 6.612091e-04	ci right 7.139630e-04	k: 2632	n:3830000
Cons ci ratio: 7.195395e-05	ci left: 9.986751e-01	ci right 9.987472e-01	k: 3825065	n:3830000
KS ci ratio: 1.322031e-01	ci left: 2.143298e-04	ci right 2.449198e-04	k: 878	n:3830000
FANCD2   3830000 perm   6131 sec   (625 perm/sec)   p_kst 2.292428e-04   p_cons 9.987115e-01   p_joint 6.872063e-04

Joint ci ratio: 7.631006e-02	ci left: 6.605090e-04	ci right 7.131653e-04	k: 2636	n:3840000
Cons ci ratio: 7.184647e-05	ci left: 9.986756e-01	ci right 9.987476e-01	k: 3835054	n:3840000
KS ci ratio: 1.321280e-01	ci left: 2.140234e-04	ci right 2.445510e-04	k: 879	n:3840000
FANCD2   3840000 perm   6161 sec   (623 perm/sec)   p_kst 2.289062e-04   p_cons 9.987120e-01   p_joint 6.864583e-04

Joint ci ratio: 7.623783e-02	ci left: 6.600673e-04	ci right 7.126364e-04	k: 2641	n:3850000
Cons ci ratio: 7.173947e-05	ci left: 9.986761e-01	ci right 9.987480e-01	k: 3845043	n:3850000
KS ci ratio: 1.320530e-01	ci left: 2.137187e-04	ci right 2.441841e-04	k: 880	n:3850000
FANCD2   3850000 perm   6190 sec   (622 perm/sec)   p_kst 2.285714e-04   p_cons 9.987125e-01   p_joint 6.859740e-04

Joint ci ratio: 7.615142e-02	ci left: 6.598821e-04	ci right 7.123742e-04	k: 2647	n:3860000
Cons ci ratio: 7.161127e-05	ci left: 9.986775e-01	ci right 9.987492e-01	k: 3855035	n:3860000
KS ci ratio: 1.319034e-01	ci left: 2.136660e-04	ci right 2.440868e-04	k: 882	n:3860000
FANCD2   3860000 perm   6219 sec   (621 perm/sec)   p_kst 2.284974e-04   p_cons 9.987137e-01   p_joint 6.857513e-04

Joint ci ratio: 7.607964e-02	ci left: 6.594444e-04	ci right 7.118500e-04	k: 2652	n:3870000
Cons ci ratio: 7.147650e-05	ci left: 9.986791e-01	ci right 9.987507e-01	k: 3865028	n:3870000
KS ci ratio: 1.318288e-01	ci left: 2.133638e-04	ci right 2.437230e-04	k: 883	n:3870000
FANCD2   3870000 perm   6249 sec   (619 perm/sec)   p_kst 2.281654e-04   p_cons 9.987152e-01   p_joint 6.852713e-04

Joint ci ratio: 7.597947e-02	ci left: 6.595146e-04	ci right 7.118538e-04	k: 2659	n:3880000
Cons ci ratio: 7.134238e-05	ci left: 9.986806e-01	ci right 9.987521e-01	k: 3875021	n:3880000
KS ci ratio: 1.316799e-01	ci left: 2.133124e-04	ci right 2.436273e-04	k: 885	n:3880000
FANCD2   3880000 perm   6278 sec   (618 perm/sec)   p_kst 2.280928e-04   p_cons 9.987168e-01   p_joint 6.853093e-04

Joint ci ratio: 7.593670e-02	ci left: 6.585757e-04	ci right 7.108097e-04	k: 2662	n:3890000
Cons ci ratio: 7.128038e-05	ci left: 9.986796e-01	ci right 9.987510e-01	k: 3885004	n:3890000
KS ci ratio: 1.315316e-01	ci left: 2.132612e-04	ci right 2.435320e-04	k: 887	n:3890000
FANCD2   3890000 perm   6307 sec   (617 perm/sec)   p_kst 2.280206e-04   p_cons 9.987157e-01   p_joint 6.843188e-04

Joint ci ratio: 7.586553e-02	ci left: 6.581448e-04	ci right 7.102935e-04	k: 2667	n:3900000
Cons ci ratio: 7.119003e-05	ci left: 9.986796e-01	ci right 9.987509e-01	k: 3894991	n:3900000
KS ci ratio: 1.314576e-01	ci left: 2.129624e-04	ci right 2.431724e-04	k: 888	n:3900000
FANCD2   3900000 perm   6337 sec   (615 perm/sec)   p_kst 2.276923e-04   p_cons 9.987156e-01   p_joint 6.838462e-04

Joint ci ratio: 7.568131e-02	ci left: 6.597234e-04	ci right 7.118646e-04	k: 2680	n:3910000
Cons ci ratio: 7.110003e-05	ci left: 9.986796e-01	ci right 9.987509e-01	k: 3904978	n:3910000
KS ci ratio: 1.313100e-01	ci left: 2.129124e-04	ci right 2.430788e-04	k: 890	n:3910000
FANCD2   3910000 perm   6367 sec   (614 perm/sec)   p_kst 2.276215e-04   p_cons 9.987156e-01   p_joint 6.854220e-04

Joint ci ratio: 7.555458e-02	ci left: 6.602929e-04	ci right 7.123880e-04	k: 2689	n:3920000
Cons ci ratio: 7.101742e-05	ci left: 9.986793e-01	ci right 9.987505e-01	k: 3914964	n:3920000
KS ci ratio: 1.310162e-01	ci left: 2.133562e-04	ci right 2.435126e-04	k: 894	n:3920000
FANCD2   3920000 perm   6396 sec   (613 perm/sec)   p_kst 2.280612e-04   p_cons 9.987153e-01   p_joint 6.859694e-04

Joint ci ratio: 7.540054e-02	ci left: 6.613590e-04	ci right 7.134271e-04	k: 2700	n:3930000
Cons ci ratio: 7.094213e-05	ci left: 9.986788e-01	ci right 9.987499e-01	k: 3924949	n:3930000
KS ci ratio: 1.305067e-01	ci left: 2.145362e-04	ci right 2.447323e-04	k: 901	n:3930000
FANCD2   3930000 perm   6426 sec   (612 perm/sec)   p_kst 2.292621e-04   p_cons 9.987148e-01   p_joint 6.870229e-04

Joint ci ratio: 7.531694e-02	ci left: 6.611745e-04	ci right 7.131679e-04	k: 2706	n:3940000
Cons ci ratio: 7.082504e-05	ci left: 9.986799e-01	ci right 9.987509e-01	k: 3934940	n:3940000
KS ci ratio: 1.303623e-01	ci left: 2.144828e-04	ci right 2.446354e-04	k: 903	n:3940000
FANCD2   3940000 perm   6459 sec   (610 perm/sec)   p_kst 2.291878e-04   p_cons 9.987157e-01   p_joint 6.868020e-04

Joint ci ratio: 7.519202e-02	ci left: 6.617363e-04	ci right 7.136837e-04	k: 2715	n:3950000
Cons ci ratio: 7.079223e-05	ci left: 9.986778e-01	ci right 9.987488e-01	k: 3944919	n:3950000
KS ci ratio: 1.300032e-01	ci left: 2.151644e-04	ci right 2.453231e-04	k: 908	n:3950000
FANCD2   3950000 perm   6494 sec   (608 perm/sec)   p_kst 2.298734e-04   p_cons 9.987137e-01   p_joint 6.873418e-04

Joint ci ratio: 7.510911e-02	ci left: 6.615519e-04	ci right 7.134251e-04	k: 2721	n:3960000
Cons ci ratio: 7.071067e-05	ci left: 9.986776e-01	ci right 9.987485e-01	k: 3954905	n:3960000
KS ci ratio: 1.298604e-01	ci left: 2.151097e-04	ci right 2.452250e-04	k: 910	n:3960000
FANCD2   3960000 perm   6528 sec   (607 perm/sec)   p_kst 2.297980e-04   p_cons 9.987134e-01   p_joint 6.871212e-04

Joint ci ratio: 7.501272e-02	ci left: 6.616157e-04	ci right 7.134244e-04	k: 2728	n:3970000
Cons ci ratio: 7.060170e-05	ci left: 9.986784e-01	ci right 9.987491e-01	k: 3964895	n:3970000
KS ci ratio: 1.297892e-01	ci left: 2.148115e-04	ci right 2.448674e-04	k: 911	n:3970000
FANCD2   3970000 perm   6563 sec   (605 perm/sec)   p_kst 2.294710e-04   p_cons 9.987141e-01   p_joint 6.871537e-04

Joint ci ratio: 7.491670e-02	ci left: 6.616791e-04	ci right 7.134236e-04	k: 2735	n:3980000
Cons ci ratio: 7.049321e-05	ci left: 9.986791e-01	ci right 9.987498e-01	k: 3974885	n:3980000
KS ci ratio: 1.295763e-01	ci left: 2.150011e-04	ci right 2.450303e-04	k: 914	n:3980000
FANCD2   3980000 perm   6597 sec   (603 perm/sec)   p_kst 2.296482e-04   p_cons 9.987148e-01   p_joint 6.871859e-04

Joint ci ratio: 7.482105e-02	ci left: 6.617423e-04	ci right 7.134228e-04	k: 2742	n:3990000
Cons ci ratio: 7.041269e-05	ci left: 9.986789e-01	ci right 9.987495e-01	k: 3984871	n:3990000
KS ci ratio: 1.292940e-01	ci left: 2.154323e-04	ci right 2.454512e-04	k: 918	n:3990000
FANCD2   3990000 perm   6632 sec   (602 perm/sec)   p_kst 2.300752e-04   p_cons 9.987145e-01   p_joint 6.872180e-04

Joint ci ratio: 7.471217e-02	ci left: 6.620506e-04	ci right 7.136766e-04	k: 2750	n:4000000
Cons ci ratio: 7.035982e-05	ci left: 9.986776e-01	ci right 9.987481e-01	k: 3994853	n:4000000
KS ci ratio: 1.291535e-01	ci left: 2.153776e-04	ci right 2.453537e-04	k: 920	n:4000000
FANCD2   4000000 perm   6667 sec   (600 perm/sec)   p_kst 2.300000e-04   p_cons 9.987132e-01   p_joint 6.875000e-04

Joint ci ratio: 7.467150e-02	ci left: 6.611337e-04	ci right 7.126590e-04	k: 2753	n:4010000
Cons ci ratio: 7.027292e-05	ci left: 9.986776e-01	ci right 9.987481e-01	k: 4004840	n:4010000
KS ci ratio: 1.290135e-01	ci left: 2.153231e-04	ci right 2.452567e-04	k: 922	n:4010000
FANCD2   4010000 perm   6702 sec   (598 perm/sec)   p_kst 2.299252e-04   p_cons 9.987132e-01   p_joint 6.865337e-04

Joint ci ratio: 7.460382e-02	ci left: 6.607097e-04	ci right 7.121532e-04	k: 2758	n:4020000
Cons ci ratio: 7.016597e-05	ci left: 9.986784e-01	ci right 9.987487e-01	k: 4014830	n:4020000
KS ci ratio: 1.288740e-01	ci left: 2.152690e-04	ci right 2.451602e-04	k: 924	n:4020000
FANCD2   4020000 perm   6737 sec   (597 perm/sec)   p_kst 2.298507e-04   p_cons 9.987139e-01   p_joint 6.860697e-04

Joint ci ratio: 7.450936e-02	ci left: 6.607748e-04	ci right 7.121554e-04	k: 2765	n:4030000
Cons ci ratio: 7.007978e-05	ci left: 9.986784e-01	ci right 9.987487e-01	k: 4024817	n:4030000
KS ci ratio: 1.285962e-01	ci left: 2.156954e-04	ci right 2.455763e-04	k: 928	n:4030000
FANCD2   4030000 perm   6772 sec   (595 perm/sec)   p_kst 2.302730e-04   p_cons 9.987139e-01   p_joint 6.861042e-04

Joint ci ratio: 7.444212e-02	ci left: 6.603538e-04	ci right 7.116533e-04	k: 2770	n:4040000
Cons ci ratio: 6.997369e-05	ci left: 9.986792e-01	ci right 9.987493e-01	k: 4034807	n:4040000
KS ci ratio: 1.285271e-01	ci left: 2.154010e-04	ci right 2.452239e-04	k: 929	n:4040000
FANCD2   4040000 perm   6808 sec   (593 perm/sec)   p_kst 2.299505e-04   p_cons 9.987146e-01   p_joint 6.856436e-04

Joint ci ratio: 7.434827e-02	ci left: 6.604195e-04	ci right 7.116567e-04	k: 2777	n:4050000
Cons ci ratio: 6.991508e-05	ci left: 9.986782e-01	ci right 9.987483e-01	k: 4044790	n:4050000
KS ci ratio: 1.283202e-01	ci left: 2.155861e-04	ci right 2.453830e-04	k: 932	n:4050000
FANCD2   4050000 perm   6843 sec   (592 perm/sec)   p_kst 2.301235e-04   p_cons 9.987136e-01   p_joint 6.856790e-04

Joint ci ratio: 7.461761e-02	ci left: 6.539585e-04	ci right 7.048861e-04	k: 2757	n:4060000
Cons ci ratio: 6.980974e-05	ci left: 9.986789e-01	ci right 9.987489e-01	k: 4054780	n:4060000
KS ci ratio: 1.279096e-01	ci left: 2.164856e-04	ci right 2.463037e-04	k: 938	n:4060000
FANCD2   4060000 perm   6879 sec   (590 perm/sec)   p_kst 2.310345e-04   p_cons 9.987143e-01   p_joint 6.790640e-04

Joint ci ratio: 7.448267e-02	ci left: 6.547629e-04	ci right 7.056570e-04	k: 2767	n:4070000
Cons ci ratio: 6.971152e-05	ci left: 9.986795e-01	ci right 9.987493e-01	k: 4064769	n:4070000
KS ci ratio: 1.276380e-01	ci left: 2.169051e-04	ci right 2.467128e-04	k: 942	n:4070000
FANCD2   4070000 perm   6914 sec   (589 perm/sec)   p_kst 2.314496e-04   p_cons 9.987147e-01   p_joint 6.798526e-04

Joint ci ratio: 7.441551e-02	ci left: 6.543607e-04	ci right 7.051758e-04	k: 2772	n:4080000
Cons ci ratio: 6.962701e-05	ci left: 9.986795e-01	ci right 9.987492e-01	k: 4074756	n:4080000
KS ci ratio: 1.275704e-01	ci left: 2.166107e-04	ci right 2.463610e-04	k: 943	n:4080000
FANCD2   4080000 perm   6950 sec   (587 perm/sec)   p_kst 2.311275e-04   p_cons 9.987147e-01   p_joint 6.794118e-04

Joint ci ratio: 7.430838e-02	ci left: 6.546805e-04	ci right 7.054440e-04	k: 2780	n:4090000
Cons ci ratio: 6.956265e-05	ci left: 9.986787e-01	ci right 9.987484e-01	k: 4084740	n:4090000
KS ci ratio: 1.275029e-01	ci left: 2.163178e-04	ci right 2.460110e-04	k: 944	n:4090000
FANCD2   4090000 perm   6985 sec   (586 perm/sec)   p_kst 2.308068e-04   p_cons 9.987139e-01   p_joint 6.797066e-04

Joint ci ratio: 7.417511e-02	ci left: 6.554774e-04	ci right 7.062076e-04	k: 2790	n:4100000
Cons ci ratio: 6.948527e-05	ci left: 9.986785e-01	ci right 9.987481e-01	k: 4094726	n:4100000
KS ci ratio: 1.272338e-01	ci left: 2.167347e-04	ci right 2.464176e-04	k: 948	n:4100000
FANCD2   4100000 perm   7021 sec   (584 perm/sec)   p_kst 2.312195e-04   p_cons 9.987137e-01   p_joint 6.804878e-04

Joint ci ratio: 7.408227e-02	ci left: 6.555542e-04	ci right 7.062241e-04	k: 2797	n:4110000
Cons ci ratio: 6.938185e-05	ci left: 9.986792e-01	ci right 9.987488e-01	k: 4104716	n:4110000
KS ci ratio: 1.270332e-01	ci left: 2.169141e-04	ci right 2.465712e-04	k: 951	n:4110000
FANCD2   4110000 perm   7057 sec   (582 perm/sec)   p_kst 2.313869e-04   p_cons 9.987144e-01   p_joint 6.805353e-04

Joint ci ratio: 7.393704e-02	ci left: 6.565836e-04	ci right 7.072293e-04	k: 2808	n:4120000
Cons ci ratio: 6.931162e-05	ci left: 9.986788e-01	ci right 9.987482e-01	k: 4114701	n:4120000
KS ci ratio: 1.267009e-01	ci left: 2.175627e-04	ci right 2.472248e-04	k: 956	n:4120000
FANCD2   4120000 perm   7093 sec   (581 perm/sec)   p_kst 2.320388e-04   p_cons 9.987138e-01   p_joint 6.815534e-04

Joint ci ratio: 7.385821e-02	ci left: 6.564197e-04	ci right 7.069965e-04	k: 2814	n:4130000
Cons ci ratio: 6.920244e-05	ci left: 9.986797e-01	ci right 9.987491e-01	k: 4124692	n:4130000
KS ci ratio: 1.266347e-01	ci left: 2.172704e-04	ci right 2.468760e-04	k: 957	n:4130000
FANCD2   4130000 perm   7129 sec   (579 perm/sec)   p_kst 2.317191e-04   p_cons 9.987148e-01   p_joint 6.813559e-04

Joint ci ratio: 7.372734e-02	ci left: 6.572050e-04	ci right 7.077488e-04	k: 2824	n:4140000
Cons ci ratio: 6.910675e-05	ci left: 9.986802e-01	ci right 9.987495e-01	k: 4134681	n:4140000
KS ci ratio: 1.264369e-01	ci left: 2.174473e-04	ci right 2.470272e-04	k: 960	n:4140000
FANCD2   4140000 perm   7164 sec   (578 perm/sec)   p_kst 2.318841e-04   p_cons 9.987152e-01   p_joint 6.821256e-04

Joint ci ratio: 7.364918e-02	ci left: 6.570406e-04	ci right 7.075158e-04	k: 2830	n:4150000
Cons ci ratio: 6.901145e-05	ci left: 9.986807e-01	ci right 9.987499e-01	k: 4144670	n:4150000
KS ci ratio: 1.262400e-01	ci left: 2.176234e-04	ci right 2.471777e-04	k: 963	n:4150000
FANCD2   4150000 perm   7201 sec   (576 perm/sec)   p_kst 2.320482e-04   p_cons 9.987157e-01   p_joint 6.819277e-04

Joint ci ratio: 7.348060e-02	ci left: 6.585287e-04	ci right 7.089975e-04	k: 2843	n:4160000
Cons ci ratio: 6.891654e-05	ci left: 9.986812e-01	ci right 9.987503e-01	k: 4154659	n:4160000
KS ci ratio: 1.259789e-01	ci left: 2.180314e-04	ci right 2.475754e-04	k: 967	n:4160000
FANCD2   4160000 perm   7237 sec   (575 perm/sec)   p_kst 2.324519e-04   p_cons 9.987161e-01   p_joint 6.834135e-04

Joint ci ratio: 7.336459e-02	ci left: 6.590681e-04	ci right 7.094951e-04	k: 2852	n:4170000
Cons ci ratio: 6.886061e-05	ci left: 9.986803e-01	ci right 9.987493e-01	k: 4164642	n:4170000
KS ci ratio: 1.257194e-01	ci left: 2.184376e-04	ci right 2.479711e-04	k: 971	n:4170000
FANCD2   4170000 perm   7273 sec   (573 perm/sec)   p_kst 2.328537e-04   p_cons 9.987151e-01   p_joint 6.839329e-04

Joint ci ratio: 7.322353e-02	ci left: 6.600748e-04	ci right 7.104775e-04	k: 2863	n:4180000
Cons ci ratio: 6.873426e-05	ci left: 9.986820e-01	ci right 9.987508e-01	k: 4174636	n:4180000
KS ci ratio: 1.255258e-01	ci left: 2.186102e-04	ci right 2.481181e-04	k: 974	n:4180000
FANCD2   4180000 perm   7309 sec   (572 perm/sec)   p_kst 2.330144e-04   p_cons 9.987167e-01   p_joint 6.849282e-04

Joint ci ratio: 6.840893e-02	ci left: 7.562631e-04	ci right 8.100632e-04	k: 3280	n:4190000
Cons ci ratio: 6.864686e-05	ci left: 9.986822e-01	ci right 9.987510e-01	k: 4184624	n:4190000
KS ci ratio: 1.253973e-01	ci left: 2.185508e-04	ci right 2.480182e-04	k: 976	n:4190000
FANCD2   4190000 perm   7346 sec   (570 perm/sec)   p_kst 2.329356e-04   p_cons 9.987169e-01   p_joint 7.828162e-04

Joint ci ratio: 6.883017e-02	ci left: 7.451019e-04	ci right 7.984474e-04	k: 3240	n:4200000
Cons ci ratio: 6.854704e-05	ci left: 9.986829e-01	ci right 9.987516e-01	k: 4194614	n:4200000
KS ci ratio: 1.250776e-01	ci left: 2.191836e-04	ci right 2.486554e-04	k: 981	n:4200000
FANCD2   4200000 perm   7383 sec   (569 perm/sec)   p_kst 2.335714e-04   p_cons 9.987176e-01   p_joint 7.714286e-04

Joint ci ratio: 6.880899e-02	ci left: 7.437989e-04	ci right 7.970341e-04	k: 3242	n:4210000
Cons ci ratio: 6.848572e-05	ci left: 9.986822e-01	ci right 9.987508e-01	k: 4204598	n:4210000
KS ci ratio: 1.250776e-01	ci left: 2.186630e-04	ci right 2.480648e-04	k: 981	n:4210000
FANCD2   4210000 perm   7419 sec   (567 perm/sec)   p_kst 2.330166e-04   p_cons 9.987169e-01   p_joint 7.700713e-04

Joint ci ratio: 6.873486e-02	ci left: 7.436666e-04	ci right 7.968327e-04	k: 3249	n:4220000
Cons ci ratio: 6.839294e-05	ci left: 9.986827e-01	ci right 9.987512e-01	k: 4214587	n:4220000
KS ci ratio: 1.250140e-01	ci left: 2.183744e-04	ci right 2.477214e-04	k: 982	n:4220000
FANCD2   4220000 perm   7455 sec   (566 perm/sec)   p_kst 2.327014e-04   p_cons 9.987173e-01   p_joint 7.699052e-04

Joint ci ratio: 6.791382e-02	ci left: 7.602658e-04	ci right 8.139438e-04	k: 3328	n:4230000
Cons ci ratio: 6.830052e-05	ci left: 9.986832e-01	ci right 9.987516e-01	k: 4224576	n:4230000
KS ci ratio: 1.249505e-01	ci left: 2.180871e-04	ci right 2.473795e-04	k: 983	n:4230000
FANCD2   4230000 perm   7491 sec   (565 perm/sec)   p_kst 2.323877e-04   p_cons 9.987177e-01   p_joint 7.867612e-04

Joint ci ratio: 6.782219e-02	ci left: 7.605593e-04	ci right 8.141828e-04	k: 3337	n:4240000
Cons ci ratio: 6.818961e-05	ci left: 9.986844e-01	ci right 9.987527e-01	k: 4234568	n:4240000
KS ci ratio: 1.248237e-01	ci left: 2.180298e-04	ci right 2.472825e-04	k: 985	n:4240000
FANCD2   4240000 perm   7528 sec   (563 perm/sec)   p_kst 2.323113e-04   p_cons 9.987189e-01   p_joint 7.870283e-04

Joint ci ratio: 6.773094e-02	ci left: 7.608516e-04	ci right 8.144206e-04	k: 3346	n:4250000
Cons ci ratio: 6.811677e-05	ci left: 9.986841e-01	ci right 9.987524e-01	k: 4244554	n:4250000
KS ci ratio: 1.247605e-01	ci left: 2.177447e-04	ci right 2.469433e-04	k: 986	n:4250000
FANCD2   4250000 perm   7565 sec   (562 perm/sec)   p_kst 2.320000e-04   p_cons 9.987186e-01   p_joint 7.872941e-04

Joint ci ratio: 6.767032e-02	ci left: 7.604501e-04	ci right 8.139411e-04	k: 3352	n:4260000
Cons ci ratio: 6.803792e-05	ci left: 9.986841e-01	ci right 9.987523e-01	k: 4254541	n:4260000
KS ci ratio: 1.246973e-01	ci left: 2.174610e-04	ci right 2.466057e-04	k: 987	n:4260000
FANCD2   4260000 perm   7602 sec   (560 perm/sec)   p_kst 2.316901e-04   p_cons 9.987185e-01   p_joint 7.868545e-04

Joint ci ratio: 6.759980e-02	ci left: 7.602808e-04	ci right 8.137020e-04	k: 3359	n:4270000
Cons ci ratio: 6.792825e-05	ci left: 9.986853e-01	ci right 9.987534e-01	k: 4264533	n:4270000
KS ci ratio: 1.245084e-01	ci left: 2.176324e-04	ci right 2.467526e-04	k: 990	n:4270000
FANCD2   4270000 perm   7639 sec   (559 perm/sec)   p_kst 2.318501e-04   p_cons 9.987197e-01   p_joint 7.866511e-04

Joint ci ratio: 6.749942e-02	ci left: 7.608015e-04	ci right 8.141767e-04	k: 3369	n:4280000
Cons ci ratio: 6.784386e-05	ci left: 9.986855e-01	ci right 9.987535e-01	k: 4274521	n:4280000
KS ci ratio: 1.241955e-01	ci left: 2.182558e-04	ci right 2.473806e-04	k: 995	n:4280000
FANCD2   4280000 perm   7676 sec   (558 perm/sec)   p_kst 2.324766e-04   p_cons 9.987199e-01   p_joint 7.871495e-04

Joint ci ratio: 6.743942e-02	ci left: 7.604030e-04	ci right 8.137011e-04	k: 3375	n:4290000
Cons ci ratio: 6.776595e-05	ci left: 9.986855e-01	ci right 9.987534e-01	k: 4284508	n:4290000
KS ci ratio: 1.240089e-01	ci left: 2.184246e-04	ci right 2.475250e-04	k: 998	n:4290000
FANCD2   4290000 perm   7713 sec   (556 perm/sec)   p_kst 2.326340e-04   p_cons 9.987198e-01   p_joint 7.867133e-04

Joint ci ratio: 6.784291e-02	ci left: 7.494895e-04	ci right 8.023493e-04	k: 3335	n:4300000
Cons ci ratio: 6.771908e-05	ci left: 9.986843e-01	ci right 9.987522e-01	k: 4294490	n:4300000
KS ci ratio: 1.238231e-01	ci left: 2.185927e-04	ci right 2.476686e-04	k: 1001	n:4300000
FANCD2   4300000 perm   7750 sec   (555 perm/sec)   p_kst 2.327907e-04   p_cons 9.987186e-01   p_joint 7.755814e-04

Joint ci ratio: 6.786333e-02	ci left: 7.472944e-04	ci right 8.000158e-04	k: 3333	n:4310000
Cons ci ratio: 6.766612e-05	ci left: 9.986834e-01	ci right 9.987512e-01	k: 4304473	n:4310000
KS ci ratio: 1.236997e-01	ci left: 2.185352e-04	ci right 2.475724e-04	k: 1003	n:4310000
FANCD2   4310000 perm   7788 sec   (553 perm/sec)   p_kst 2.327146e-04   p_cons 9.987176e-01   p_joint 7.733179e-04

Joint ci ratio: 6.781252e-02	ci left: 7.467023e-04	ci right 7.993409e-04	k: 3338	n:4320000
Cons ci ratio: 6.755828e-05	ci left: 9.986846e-01	ci right 9.987523e-01	k: 4314465	n:4320000
KS ci ratio: 1.236381e-01	ci left: 2.182536e-04	ci right 2.472380e-04	k: 1004	n:4320000
FANCD2   4320000 perm   7826 sec   (552 perm/sec)   p_kst 2.324074e-04   p_cons 9.987187e-01   p_joint 7.726852e-04

Joint ci ratio: 6.771119e-02	ci left: 7.472482e-04	ci right 7.998435e-04	k: 3348	n:4330000
Cons ci ratio: 6.743872e-05	ci left: 9.986862e-01	ci right 9.987538e-01	k: 4324459	n:4330000
KS ci ratio: 1.234540e-01	ci left: 2.184210e-04	ci right 2.473812e-04	k: 1007	n:4330000
FANCD2   4330000 perm   7864 sec   (551 perm/sec)   p_kst 2.325635e-04   p_cons 9.987203e-01   p_joint 7.732102e-04

Joint ci ratio: 6.766072e-02	ci left: 7.466590e-04	ci right 7.991721e-04	k: 3353	n:4340000
Cons ci ratio: 6.735612e-05	ci left: 9.986864e-01	ci right 9.987539e-01	k: 4334447	n:4340000
KS ci ratio: 1.234540e-01	ci left: 2.179177e-04	ci right 2.468112e-04	k: 1007	n:4340000
FANCD2   4340000 perm   7901 sec   (549 perm/sec)   p_kst 2.320276e-04   p_cons 9.987205e-01   p_joint 7.725806e-04

Joint ci ratio: 6.768098e-02	ci left: 7.444905e-04	ci right 7.968674e-04	k: 3351	n:4350000
Cons ci ratio: 6.724963e-05	ci left: 9.986876e-01	ci right 9.987550e-01	k: 4344439	n:4350000
KS ci ratio: 1.233929e-01	ci left: 2.176396e-04	ci right 2.464808e-04	k: 1008	n:4350000
FANCD2   4350000 perm   7939 sec   (548 perm/sec)   p_kst 2.317241e-04   p_cons 9.987216e-01   p_joint 7.703448e-04

Joint ci ratio: 6.761042e-02	ci left: 7.443613e-04	ci right 7.966724e-04	k: 3358	n:4360000
Cons ci ratio: 6.716169e-05	ci left: 9.986880e-01	ci right 9.987553e-01	k: 4354428	n:4360000
KS ci ratio: 1.233929e-01	ci left: 2.171404e-04	ci right 2.459155e-04	k: 1008	n:4360000
FANCD2   4360000 perm   7976 sec   (547 perm/sec)   p_kst 2.311927e-04   p_cons 9.987220e-01   p_joint 7.701835e-04

Joint ci ratio: 6.753005e-02	ci left: 7.444577e-04	ci right 7.967109e-04	k: 3366	n:4370000
Cons ci ratio: 6.707408e-05	ci left: 9.986885e-01	ci right 9.987557e-01	k: 4364417	n:4370000
KS ci ratio: 1.232708e-01	ci left: 2.170871e-04	ci right 2.458245e-04	k: 1010	n:4370000
FANCD2   4370000 perm   8013 sec   (545 perm/sec)   p_kst 2.311213e-04   p_cons 9.987224e-01   p_joint 7.702517e-04

Joint ci ratio: 6.743997e-02	ci left: 7.447781e-04	ci right 7.969814e-04	k: 3375	n:4380000
Cons ci ratio: 6.695684e-05	ci left: 9.986901e-01	ci right 9.987572e-01	k: 4374411	n:4380000
KS ci ratio: 1.232099e-01	ci left: 2.168127e-04	ci right 2.454986e-04	k: 1011	n:4380000
FANCD2   4380000 perm   8051 sec   (544 perm/sec)   p_kst 2.308219e-04   p_cons 9.987240e-01   p_joint 7.705479e-04

Joint ci ratio: 6.741006e-02	ci left: 7.437534e-04	ci right 7.958608e-04	k: 3378	n:4390000
Cons ci ratio: 6.687000e-05	ci left: 9.986905e-01	ci right 9.987575e-01	k: 4384400	n:4390000
KS ci ratio: 1.230883e-01	ci left: 2.167604e-04	ci right 2.454090e-04	k: 1013	n:4390000
FANCD2   4390000 perm   8089 sec   (543 perm/sec)   p_kst 2.307517e-04   p_cons 9.987244e-01   p_joint 7.694761e-04

Joint ci ratio: 6.731052e-02	ci left: 7.442975e-04	ci right 7.963631e-04	k: 3388	n:4400000
Cons ci ratio: 6.680136e-05	ci left: 9.986903e-01	ci right 9.987572e-01	k: 4394386	n:4400000
KS ci ratio: 1.229671e-01	ci left: 2.167083e-04	ci right 2.453198e-04	k: 1015	n:4400000
FANCD2   4400000 perm   8127 sec   (541 perm/sec)   p_kst 2.306818e-04   p_cons 9.987241e-01   p_joint 7.700000e-04

Joint ci ratio: 6.736032e-02	ci left: 7.414950e-04	ci right 7.934044e-04	k: 3383	n:4410000
Cons ci ratio: 6.672106e-05	ci left: 9.986905e-01	ci right 9.987574e-01	k: 4404374	n:4410000
KS ci ratio: 1.227860e-01	ci left: 2.168762e-04	ci right 2.454647e-04	k: 1018	n:4410000
FANCD2   4410000 perm   8164 sec   (540 perm/sec)   p_kst 2.308390e-04   p_cons 9.987243e-01   p_joint 7.671202e-04

Joint ci ratio: 6.728084e-02	ci left: 7.415969e-04	ci right 7.934498e-04	k: 3391	n:4420000
Cons ci ratio: 6.664696e-05	ci left: 9.986905e-01	ci right 9.987573e-01	k: 4414361	n:4420000
KS ci ratio: 1.224858e-01	ci left: 2.174821e-04	ci right 2.460753e-04	k: 1023	n:4420000
FANCD2   4420000 perm   8203 sec   (539 perm/sec)   p_kst 2.314480e-04   p_cons 9.987242e-01   p_joint 7.671946e-04

Joint ci ratio: 6.720163e-02	ci left: 7.416984e-04	ci right 7.934949e-04	k: 3399	n:4430000
Cons ci ratio: 6.653773e-05	ci left: 9.986918e-01	ci right 9.987585e-01	k: 4424354	n:4430000
KS ci ratio: 1.221878e-01	ci left: 2.180853e-04	ci right 2.466830e-04	k: 1028	n:4430000
FANCD2   4430000 perm   8241 sec   (538 perm/sec)   p_kst 2.320542e-04   p_cons 9.987255e-01   p_joint 7.672686e-04

Joint ci ratio: 6.714243e-02	ci left: 7.413566e-04	ci right 7.930818e-04	k: 3405	n:4440000
Cons ci ratio: 6.647012e-05	ci left: 9.986916e-01	ci right 9.987582e-01	k: 4434340	n:4440000
KS ci ratio: 1.220692e-01	ci left: 2.180308e-04	ci right 2.465916e-04	k: 1030	n:4440000
FANCD2   4440000 perm   8280 sec   (536 perm/sec)   p_kst 2.319820e-04   p_cons 9.987252e-01   p_joint 7.668919e-04

Joint ci ratio: 6.702443e-02	ci left: 7.423420e-04	ci right 7.940415e-04	k: 3417	n:4450000
Cons ci ratio: 6.638514e-05	ci left: 9.986920e-01	ci right 9.987586e-01	k: 4444329	n:4450000
KS ci ratio: 1.218331e-01	ci left: 2.184123e-04	ci right 2.469637e-04	k: 1034	n:4450000
FANCD2   4450000 perm   8318 sec   (535 perm/sec)   p_kst 2.323596e-04   p_cons 9.987256e-01   p_joint 7.678652e-04

Joint ci ratio: 6.707360e-02	ci left: 7.395753e-04	ci right 7.911213e-04	k: 3412	n:4460000
Cons ci ratio: 6.635302e-05	ci left: 9.986904e-01	ci right 9.987569e-01	k: 4454309	n:4460000
KS ci ratio: 1.217743e-01	ci left: 2.181400e-04	ci right 2.466410e-04	k: 1035	n:4460000
FANCD2   4460000 perm   8357 sec   (534 perm/sec)   p_kst 2.320628e-04   p_cons 9.987240e-01   p_joint 7.650224e-04

Joint ci ratio: 6.703436e-02	ci left: 7.388006e-04	ci right 7.902613e-04	k: 3416	n:4470000
Cons ci ratio: 6.629178e-05	ci left: 9.986900e-01	ci right 9.987564e-01	k: 4464294	n:4470000
KS ci ratio: 1.216569e-01	ci left: 2.180858e-04	ci right 2.465503e-04	k: 1037	n:4470000
FANCD2   4470000 perm   8395 sec   (532 perm/sec)   p_kst 2.319911e-04   p_cons 9.987235e-01   p_joint 7.642058e-04

Joint ci ratio: 6.699519e-02	ci left: 7.380293e-04	ci right 7.894052e-04	k: 3420	n:4480000
Cons ci ratio: 6.620750e-05	ci left: 9.986904e-01	ci right 9.987567e-01	k: 4474283	n:4480000
KS ci ratio: 1.215984e-01	ci left: 2.178154e-04	ci right 2.462300e-04	k: 1038	n:4480000
FANCD2   4480000 perm   8434 sec   (531 perm/sec)   p_kst 2.316964e-04   p_cons 9.987239e-01   p_joint 7.633929e-04

Joint ci ratio: 6.686822e-02	ci left: 7.392325e-04	ci right 7.905908e-04	k: 3433	n:4490000
Cons ci ratio: 6.614088e-05	ci left: 9.986901e-01	ci right 9.987564e-01	k: 4484269	n:4490000
KS ci ratio: 1.213068e-01	ci left: 2.184100e-04	ci right 2.468290e-04	k: 1043	n:4490000
FANCD2   4490000 perm   8474 sec   (530 perm/sec)   p_kst 2.322940e-04   p_cons 9.987236e-01   p_joint 7.645880e-04

Joint ci ratio: 6.676135e-02	ci left: 7.399934e-04	ci right 7.913192e-04	k: 3444	n:4500000
Cons ci ratio: 6.607445e-05	ci left: 9.986899e-01	ci right 9.987561e-01	k: 4494255	n:4500000
KS ci ratio: 1.210174e-01	ci left: 2.190021e-04	ci right 2.474252e-04	k: 1048	n:4500000
FANCD2   4500000 perm   8513 sec   (529 perm/sec)   p_kst 2.328889e-04   p_cons 9.987233e-01   p_joint 7.653333e-04

Joint ci ratio: 6.728135e-02	ci left: 7.267977e-04	ci right 7.776162e-04	k: 3391	n:4510000
Cons ci ratio: 6.599101e-05	ci left: 9.986903e-01	ci right 9.987565e-01	k: 4504244	n:4510000
KS ci ratio: 1.208447e-01	ci left: 2.191616e-04	ci right 2.475619e-04	k: 1051	n:4510000
FANCD2   4510000 perm   8552 sec   (527 perm/sec)   p_kst 2.330377e-04   p_cons 9.987237e-01   p_joint 7.518847e-04

Joint ci ratio: 6.717250e-02	ci left: 7.275825e-04	ci right 7.783703e-04	k: 3402	n:4520000
Cons ci ratio: 6.591931e-05	ci left: 9.986903e-01	ci right 9.987564e-01	k: 4514231	n:4520000
KS ci ratio: 1.207873e-01	ci left: 2.188913e-04	ci right 2.472421e-04	k: 1052	n:4520000
FANCD2   4520000 perm   8590 sec   (526 perm/sec)   p_kst 2.327434e-04   p_cons 9.987237e-01   p_joint 7.526549e-04

Joint ci ratio: 6.711337e-02	ci left: 7.272786e-04	ci right 7.779988e-04	k: 3408	n:4530000
Cons ci ratio: 6.586495e-05	ci left: 9.986896e-01	ci right 9.987556e-01	k: 4524215	n:4530000
KS ci ratio: 1.205015e-01	ci left: 2.194785e-04	ci right 2.478334e-04	k: 1057	n:4530000
FANCD2   4530000 perm   8630 sec   (525 perm/sec)   p_kst 2.333333e-04   p_cons 9.987230e-01   p_joint 7.523179e-04

Joint ci ratio: 6.708389e-02	ci left: 7.263264e-04	ci right 7.769571e-04	k: 3411	n:4540000
Cons ci ratio: 6.578230e-05	ci left: 9.986901e-01	ci right 9.987560e-01	k: 4534204	n:4540000
KS ci ratio: 1.205015e-01	ci left: 2.189951e-04	ci right 2.472875e-04	k: 1057	n:4540000
FANCD2   4540000 perm   8669 sec   (524 perm/sec)   p_kst 2.328194e-04   p_cons 9.987233e-01   p_joint 7.513216e-04

Joint ci ratio: 6.706428e-02	ci left: 7.251622e-04	ci right 7.756964e-04	k: 3413	n:4550000
Cons ci ratio: 6.569430e-05	ci left: 9.986907e-01	ci right 9.987566e-01	k: 4544194	n:4550000
KS ci ratio: 1.205016e-01	ci left: 2.185138e-04	ci right 2.467440e-04	k: 1057	n:4550000
FANCD2   4550000 perm   8708 sec   (523 perm/sec)   p_kst 2.323077e-04   p_cons 9.987240e-01   p_joint 7.501099e-04

Joint ci ratio: 6.701524e-02	ci left: 7.246500e-04	ci right 7.751102e-04	k: 3418	n:4560000
Cons ci ratio: 6.560663e-05	ci left: 9.986914e-01	ci right 9.987571e-01	k: 4554184	n:4560000
KS ci ratio: 1.204447e-01	ci left: 2.182473e-04	ci right 2.464288e-04	k: 1058	n:4560000
FANCD2   4560000 perm   8748 sec   (521 perm/sec)   p_kst 2.320175e-04   p_cons 9.987246e-01   p_joint 7.495614e-04

Joint ci ratio: 6.696631e-02	ci left: 7.241401e-04	ci right 7.745265e-04	k: 3423	n:4570000
Cons ci ratio: 6.553055e-05	ci left: 9.986916e-01	ci right 9.987572e-01	k: 4564172	n:4570000
KS ci ratio: 1.203311e-01	ci left: 2.181942e-04	ci right 2.463404e-04	k: 1060	n:4570000
FANCD2   4570000 perm   8787 sec   (520 perm/sec)   p_kst 2.319475e-04   p_cons 9.987247e-01   p_joint 7.490153e-04

Joint ci ratio: 6.687846e-02	ci left: 7.244912e-04	ci right 7.748334e-04	k: 3432	n:4580000
Cons ci ratio: 6.546595e-05	ci left: 9.986913e-01	ci right 9.987569e-01	k: 4574158	n:4580000
KS ci ratio: 1.199361e-01	ci left: 2.192002e-04	ci right 2.473768e-04	k: 1067	n:4580000
FANCD2   4580000 perm   8827 sec   (519 perm/sec)   p_kst 2.329694e-04   p_cons 9.987245e-01   p_joint 7.493450e-04

Joint ci ratio: 6.679096e-02	ci left: 7.248408e-04	ci right 7.751388e-04	k: 3441	n:4590000
Cons ci ratio: 6.536800e-05	ci left: 9.986924e-01	ci right 9.987579e-01	k: 4584150	n:4590000
KS ci ratio: 1.197679e-01	ci left: 2.193567e-04	ci right 2.475110e-04	k: 1070	n:4590000
FANCD2   4590000 perm   8867 sec   (518 perm/sec)   p_kst 2.331155e-04   p_cons 9.987255e-01   p_joint 7.496732e-04

Joint ci ratio: 6.673283e-02	ci left: 7.245477e-04	ci right 7.747798e-04	k: 3447	n:4600000
Cons ci ratio: 6.527043e-05	ci left: 9.986935e-01	ci right 9.987589e-01	k: 4594142	n:4600000
KS ci ratio: 1.196563e-01	ci left: 2.193016e-04	ci right 2.474208e-04	k: 1072	n:4600000
FANCD2   4600000 perm   8907 sec   (516 perm/sec)   p_kst 2.330435e-04   p_cons 9.987265e-01   p_joint 7.493478e-04

Joint ci ratio: 6.667486e-02	ci left: 7.242558e-04	ci right 7.744224e-04	k: 3453	n:4610000
Cons ci ratio: 6.521774e-05	ci left: 9.986928e-01	ci right 9.987582e-01	k: 4604126	n:4610000
KS ci ratio: 1.196006e-01	ci left: 2.190363e-04	ci right 2.471075e-04	k: 1073	n:4610000
FANCD2   4610000 perm   8947 sec   (515 perm/sec)   p_kst 2.327549e-04   p_cons 9.987258e-01   p_joint 7.490239e-04

Joint ci ratio: 6.662667e-02	ci left: 7.237523e-04	ci right 7.738465e-04	k: 3458	n:4620000
Cons ci ratio: 6.514854e-05	ci left: 9.986928e-01	ci right 9.987581e-01	k: 4614113	n:4620000
KS ci ratio: 1.194894e-01	ci left: 2.189821e-04	ci right 2.470185e-04	k: 1075	n:4620000
FANCD2   4620000 perm   8988 sec   (514 perm/sec)   p_kst 2.326840e-04   p_cons 9.987258e-01   p_joint 7.484848e-04

Joint ci ratio: 6.654015e-02	ci left: 7.241007e-04	ci right 7.741513e-04	k: 3467	n:4630000
Cons ci ratio: 6.507403e-05	ci left: 9.986930e-01	ci right 9.987582e-01	k: 4624101	n:4630000
KS ci ratio: 1.194339e-01	ci left: 2.187187e-04	ci right 2.467074e-04	k: 1076	n:4630000
FANCD2   4630000 perm   9028 sec   (513 perm/sec)   p_kst 2.323974e-04   p_cons 9.987259e-01   p_joint 7.488121e-04

Joint ci ratio: 6.644440e-02	ci left: 7.246594e-04	ci right 7.746739e-04	k: 3477	n:4640000
Cons ci ratio: 6.499428e-05	ci left: 9.986934e-01	ci right 9.987585e-01	k: 4634090	n:4640000
KS ci ratio: 1.191576e-01	ci left: 2.192928e-04	ci right 2.472854e-04	k: 1081	n:4640000
FANCD2   4640000 perm   9068 sec   (512 perm/sec)   p_kst 2.329741e-04   p_cons 9.987263e-01   p_joint 7.493534e-04

Joint ci ratio: 6.634907e-02	ci left: 7.252159e-04	ci right 7.751941e-04	k: 3487	n:4650000
Cons ci ratio: 6.491481e-05	ci left: 9.986938e-01	ci right 9.987589e-01	k: 4644079	n:4650000
KS ci ratio: 1.191026e-01	ci left: 2.190298e-04	ci right 2.469751e-04	k: 1082	n:4650000
FANCD2   4650000 perm   9107 sec   (511 perm/sec)   p_kst 2.326882e-04   p_cons 9.987267e-01   p_joint 7.498925e-04

Joint ci ratio: 6.628260e-02	ci left: 7.251369e-04	ci right 7.750577e-04	k: 3494	n:4660000
Cons ci ratio: 6.485204e-05	ci left: 9.986936e-01	ci right 9.987586e-01	k: 4654065	n:4660000
KS ci ratio: 1.191026e-01	ci left: 2.185598e-04	ci right 2.464451e-04	k: 1082	n:4660000
FANCD2   4660000 perm   9148 sec   (509 perm/sec)   p_kst 2.321888e-04   p_cons 9.987264e-01   p_joint 7.497854e-04

Joint ci ratio: 6.625420e-02	ci left: 7.242158e-04	ci right 7.740511e-04	k: 3497	n:4670000
Cons ci ratio: 6.476764e-05	ci left: 9.986942e-01	ci right 9.987591e-01	k: 4664055	n:4670000
KS ci ratio: 1.190477e-01	ci left: 2.182995e-04	ci right 2.461379e-04	k: 1083	n:4670000
FANCD2   4670000 perm   9188 sec   (508 perm/sec)   p_kst 2.319058e-04   p_cons 9.987270e-01   p_joint 7.488223e-04

Joint ci ratio: 6.670423e-02	ci left: 7.127924e-04	ci right 7.621876e-04	k: 3450	n:4680000
Cons ci ratio: 6.472703e-05	ci left: 9.986931e-01	ci right 9.987580e-01	k: 4674037	n:4680000
KS ci ratio: 1.188833e-01	ci left: 2.184550e-04	ci right 2.462720e-04	k: 1086	n:4680000
FANCD2   4680000 perm   9229 sec   (507 perm/sec)   p_kst 2.320513e-04   p_cons 9.987259e-01   p_joint 7.371795e-04

Joint ci ratio: 6.662704e-02	ci left: 7.129499e-04	ci right 7.622967e-04	k: 3458	n:4690000
Cons ci ratio: 6.468645e-05	ci left: 9.986920e-01	ci right 9.987568e-01	k: 4684019	n:4690000
KS ci ratio: 1.187196e-01	ci left: 2.186099e-04	ci right 2.464056e-04	k: 1089	n:4690000
FANCD2   4690000 perm   9270 sec   (506 perm/sec)   p_kst 2.321962e-04   p_cons 9.987247e-01   p_joint 7.373134e-04

Joint ci ratio: 6.667534e-02	ci left: 7.103869e-04	ci right 7.595932e-04	k: 3453	n:4700000
Cons ci ratio: 6.458654e-05	ci left: 9.986933e-01	ci right 9.987580e-01	k: 4694012	n:4700000
KS ci ratio: 1.186652e-01	ci left: 2.183512e-04	ci right 2.461004e-04	k: 1090	n:4700000
FANCD2   4700000 perm   9310 sec   (505 perm/sec)   p_kst 2.319149e-04   p_cons 9.987260e-01   p_joint 7.346809e-04

Joint ci ratio: 6.660788e-02	ci left: 7.103401e-04	ci right 7.594915e-04	k: 3460	n:4710000
Cons ci ratio: 6.453547e-05	ci left: 9.986926e-01	ci right 9.987573e-01	k: 4703996	n:4710000
KS ci ratio: 1.186108e-01	ci left: 2.180936e-04	ci right 2.457965e-04	k: 1091	n:4710000
FANCD2   4710000 perm   9351 sec   (504 perm/sec)   p_kst 2.316348e-04   p_cons 9.987253e-01   p_joint 7.346072e-04

Joint ci ratio: 6.478819e-02	ci left: 7.498874e-04	ci right 8.003045e-04	k: 3657	n:4720000
Cons ci ratio: 6.447914e-05	ci left: 9.986922e-01	ci right 9.987568e-01	k: 4713981	n:4720000
KS ci ratio: 1.185024e-01	ci left: 2.180427e-04	ci right 2.457120e-04	k: 1093	n:4720000
FANCD2   4720000 perm   9392 sec   (503 perm/sec)   p_kst 2.315678e-04   p_cons 9.987248e-01   p_joint 7.747881e-04

Joint ci ratio: 6.477052e-02	ci left: 7.487180e-04	ci right 7.990423e-04	k: 3659	n:4730000
Cons ci ratio: 6.440156e-05	ci left: 9.986926e-01	ci right 9.987571e-01	k: 4723970	n:4730000
KS ci ratio: 1.181250e-01	ci left: 2.190179e-04	ci right 2.467162e-04	k: 1100	n:4730000
FANCD2   4730000 perm   9433 sec   (501 perm/sec)   p_kst 2.325581e-04   p_cons 9.987252e-01   p_joint 7.735729e-04

Joint ci ratio: 6.466457e-02	ci left: 7.496291e-04	ci right 7.999291e-04	k: 3671	n:4740000
Cons ci ratio: 6.429761e-05	ci left: 9.986941e-01	ci right 9.987585e-01	k: 4733964	n:4740000
KS ci ratio: 1.179110e-01	ci left: 2.193748e-04	ci right 2.470645e-04	k: 1104	n:4740000
FANCD2   4740000 perm   9474 sec   (500 perm/sec)   p_kst 2.329114e-04   p_cons 9.987266e-01   p_joint 7.744726e-04

Joint ci ratio: 6.458546e-02	ci left: 7.499151e-04	ci right 8.001704e-04	k: 3680	n:4750000
Cons ci ratio: 6.425786e-05	ci left: 9.986930e-01	ci right 9.987574e-01	k: 4743946	n:4750000
KS ci ratio: 1.178577e-01	ci left: 2.191173e-04	ci right 2.467611e-04	k: 1105	n:4750000
FANCD2   4750000 perm   9515 sec   (499 perm/sec)   p_kst 2.326316e-04   p_cons 9.987255e-01   p_joint 7.747368e-04

Joint ci ratio: 6.450664e-02	ci left: 7.501999e-04	ci right 8.004106e-04	k: 3689	n:4760000
Cons ci ratio: 6.421285e-05	ci left: 9.986921e-01	ci right 9.987564e-01	k: 4753929	n:4760000
KS ci ratio: 1.178045e-01	ci left: 2.188608e-04	ci right 2.464590e-04	k: 1106	n:4760000
FANCD2   4760000 perm   9556 sec   (498 perm/sec)   p_kst 2.323529e-04   p_cons 9.987246e-01   p_joint 7.750000e-04

Joint ci ratio: 6.443683e-02	ci left: 7.502772e-04	ci right 8.004368e-04	k: 3697	n:4770000
Cons ci ratio: 6.416262e-05	ci left: 9.986915e-01	ci right 9.987557e-01	k: 4763913	n:4770000
KS ci ratio: 1.176982e-01	ci left: 2.188089e-04	ci right 2.463739e-04	k: 1108	n:4770000
FANCD2   4770000 perm   9597 sec   (497 perm/sec)   p_kst 2.322851e-04   p_cons 9.987239e-01   p_joint 7.750524e-04

Joint ci ratio: 6.436724e-02	ci left: 7.503543e-04	ci right 8.004628e-04	k: 3705	n:4780000
Cons ci ratio: 6.410198e-05	ci left: 9.986912e-01	ci right 9.987554e-01	k: 4773899	n:4780000
KS ci ratio: 1.175393e-01	ci left: 2.189603e-04	ci right 2.465046e-04	k: 1111	n:4780000
FANCD2   4780000 perm   9639 sec   (496 perm/sec)   p_kst 2.324268e-04   p_cons 9.987236e-01   p_joint 7.751046e-04

Joint ci ratio: 6.430654e-02	ci left: 7.502257e-04	ci right 8.002766e-04	k: 3712	n:4790000
Cons ci ratio: 6.404150e-05	ci left: 9.986910e-01	ci right 9.987552e-01	k: 4783885	n:4790000
KS ci ratio: 1.173284e-01	ci left: 2.193137e-04	ci right 2.468495e-04	k: 1115	n:4790000
FANCD2   4790000 perm   9679 sec   (495 perm/sec)   p_kst 2.327766e-04   p_cons 9.987234e-01   p_joint 7.749478e-04

Joint ci ratio: 6.428927e-02	ci left: 7.490726e-04	ci right 7.990327e-04	k: 3714	n:4800000
Cons ci ratio: 6.397597e-05	ci left: 9.986910e-01	ci right 9.987551e-01	k: 4793872	n:4800000
KS ci ratio: 1.173285e-01	ci left: 2.188568e-04	ci right 2.463353e-04	k: 1115	n:4800000
FANCD2   4800000 perm   9720 sec   (494 perm/sec)   p_kst 2.322917e-04   p_cons 9.987233e-01   p_joint 7.737500e-04

Joint ci ratio: 6.422016e-02	ci left: 7.491518e-04	ci right 7.990615e-04	k: 3722	n:4810000
Cons ci ratio: 6.392105e-05	ci left: 9.986905e-01	ci right 9.987546e-01	k: 4803857	n:4810000
KS ci ratio: 1.172235e-01	ci left: 2.188054e-04	ci right 2.462511e-04	k: 1117	n:4810000
FANCD2   4810000 perm   9761 sec   (493 perm/sec)   p_kst 2.322245e-04   p_cons 9.987229e-01   p_joint 7.738046e-04

Joint ci ratio: 6.416848e-02	ci left: 7.488224e-04	ci right 7.986685e-04	k: 3728	n:4820000
Cons ci ratio: 6.383511e-05	ci left: 9.986914e-01	ci right 9.987553e-01	k: 4813848	n:4820000
KS ci ratio: 1.171711e-01	ci left: 2.185529e-04	ci right 2.459538e-04	k: 1118	n:4820000
FANCD2   4820000 perm   9803 sec   (492 perm/sec)   p_kst 2.319502e-04   p_cons 9.987237e-01   p_joint 7.734440e-04

Joint ci ratio: 6.410834e-02	ci left: 7.486980e-04	ci right 7.984874e-04	k: 3735	n:4830000
Cons ci ratio: 6.375986e-05	ci left: 9.986918e-01	ci right 9.987557e-01	k: 4823837	n:4830000
KS ci ratio: 1.169622e-01	ci left: 2.189043e-04	ci right 2.462970e-04	k: 1122	n:4830000
FANCD2   4830000 perm   9845 sec   (491 perm/sec)   p_kst 2.322981e-04   p_cons 9.987240e-01   p_joint 7.732919e-04

Joint ci ratio: 6.401415e-02	ci left: 7.493875e-04	ci right 7.991468e-04	k: 3746	n:4840000
Cons ci ratio: 6.369002e-05	ci left: 9.986920e-01	ci right 9.987558e-01	k: 4833825	n:4840000
KS ci ratio: 1.168063e-01	ci left: 2.190537e-04	ci right 2.464260e-04	k: 1125	n:4840000
FANCD2   4840000 perm   9886 sec   (490 perm/sec)   p_kst 2.324380e-04   p_cons 9.987242e-01   p_joint 7.739669e-04

Joint ci ratio: 6.392037e-02	ci left: 7.500741e-04	ci right 7.998033e-04	k: 3757	n:4850000
Cons ci ratio: 6.363071e-05	ci left: 9.986917e-01	ci right 9.987555e-01	k: 4843811	n:4850000
KS ci ratio: 1.165994e-01	ci left: 2.194027e-04	ci right 2.467667e-04	k: 1129	n:4850000
FANCD2   4850000 perm   9927 sec   (489 perm/sec)   p_kst 2.327835e-04   p_cons 9.987239e-01   p_joint 7.746392e-04

Joint ci ratio: 6.385245e-02	ci left: 7.501506e-04	ci right 7.998300e-04	k: 3765	n:4860000
Cons ci ratio: 6.358694e-05	ci left: 9.986909e-01	ci right 9.987546e-01	k: 4853794	n:4860000
KS ci ratio: 1.164963e-01	ci left: 2.193508e-04	ci right 2.466825e-04	k: 1131	n:4860000
FANCD2   4860000 perm   9969 sec   (488 perm/sec)   p_kst 2.327160e-04   p_cons 9.987230e-01   p_joint 7.746914e-04

Joint ci ratio: 6.420321e-02	ci left: 7.403260e-04	ci right 7.896342e-04	k: 3724	n:4870000
Cons ci ratio: 6.351257e-05	ci left: 9.986913e-01	ci right 9.987549e-01	k: 4863783	n:4870000
KS ci ratio: 1.164964e-01	ci left: 2.189004e-04	ci right 2.461760e-04	k: 1131	n:4870000
FANCD2   4870000 perm   10011 sec   (486 perm/sec)   p_kst 2.322382e-04   p_cons 9.987234e-01   p_joint 7.646817e-04

Joint ci ratio: 6.413437e-02	ci left: 7.404220e-04	ci right 7.896817e-04	k: 3732	n:4880000
Cons ci ratio: 6.345374e-05	ci left: 9.986911e-01	ci right 9.987546e-01	k: 4873769	n:4880000
KS ci ratio: 1.164964e-01	ci left: 2.184518e-04	ci right 2.456715e-04	k: 1131	n:4880000
FANCD2   4880000 perm   10053 sec   (485 perm/sec)   p_kst 2.317623e-04   p_cons 9.987232e-01   p_joint 7.647541e-04

Joint ci ratio: 6.410006e-02	ci left: 7.397127e-04	ci right 7.888979e-04	k: 3736	n:4890000
Cons ci ratio: 6.336458e-05	ci left: 9.986921e-01	ci right 9.987556e-01	k: 4883761	n:4890000
KS ci ratio: 1.164450e-01	ci left: 2.182036e-04	ci right 2.453796e-04	k: 1132	n:4890000
FANCD2   4890000 perm   10095 sec   (484 perm/sec)   p_kst 2.314928e-04   p_cons 9.987241e-01   p_joint 7.640082e-04

Joint ci ratio: 6.402301e-02	ci left: 7.400104e-04	ci right 7.891541e-04	k: 3745	n:4900000
Cons ci ratio: 6.330617e-05	ci left: 9.986919e-01	ci right 9.987553e-01	k: 4893747	n:4900000
KS ci ratio: 1.162911e-01	ci left: 2.183527e-04	ci right 2.455089e-04	k: 1135	n:4900000
FANCD2   4900000 perm   10137 sec   (483 perm/sec)   p_kst 2.316327e-04   p_cons 9.987239e-01   p_joint 7.642857e-04

Joint ci ratio: 6.398034e-02	ci left: 7.395053e-04	ci right 7.885815e-04	k: 3750	n:4910000
Cons ci ratio: 6.322265e-05	ci left: 9.986927e-01	ci right 9.987560e-01	k: 4903738	n:4910000
KS ci ratio: 1.162400e-01	ci left: 2.181058e-04	ci right 2.452184e-04	k: 1136	n:4910000
FANCD2   4910000 perm   10179 sec   (482 perm/sec)   p_kst 2.313646e-04   p_cons 9.987246e-01   p_joint 7.637475e-04

Joint ci ratio: 6.392924e-02	ci left: 7.392022e-04	ci right 7.882177e-04	k: 3756	n:4920000
Cons ci ratio: 6.312432e-05	ci left: 9.986941e-01	ci right 9.987573e-01	k: 4913732	n:4920000
KS ci ratio: 1.161889e-01	ci left: 2.178598e-04	ci right 2.449292e-04	k: 1137	n:4920000
FANCD2   4920000 perm   10220 sec   (481 perm/sec)   p_kst 2.310976e-04   p_cons 9.987260e-01   p_joint 7.634146e-04

Joint ci ratio: 6.433327e-02	ci left: 7.283221e-04	ci right 7.769327e-04	k: 3709	n:4930000
Cons ci ratio: 6.302638e-05	ci left: 9.986955e-01	ci right 9.987587e-01	k: 4923726	n:4930000
KS ci ratio: 1.160361e-01	ci left: 2.180088e-04	ci right 2.450586e-04	k: 1140	n:4930000
FANCD2   4930000 perm   10262 sec   (480 perm/sec)   p_kst 2.312373e-04   p_cons 9.987274e-01   p_joint 7.523327e-04

Joint ci ratio: 6.427266e-02	ci left: 7.282420e-04	ci right 7.767997e-04	k: 3716	n:4940000
Cons ci ratio: 6.297394e-05	ci left: 9.986951e-01	ci right 9.987582e-01	k: 4933711	n:4940000
KS ci ratio: 1.159345e-01	ci left: 2.179606e-04	ci right 2.449791e-04	k: 1142	n:4940000
FANCD2   4940000 perm   10305 sec   (479 perm/sec)   p_kst 2.311741e-04   p_cons 9.987269e-01   p_joint 7.522267e-04

Joint ci ratio: 6.416053e-02	ci left: 7.293549e-04	ci right 7.778988e-04	k: 3729	n:4950000
Cons ci ratio: 6.291663e-05	ci left: 9.986949e-01	ci right 9.987579e-01	k: 4943697	n:4950000
KS ci ratio: 1.157321e-01	ci left: 2.183049e-04	ci right 2.453157e-04	k: 1146	n:4950000
FANCD2   4950000 perm   10347 sec   (478 perm/sec)   p_kst 2.315152e-04   p_cons 9.987267e-01   p_joint 7.533333e-04

Joint ci ratio: 6.420365e-02	ci left: 7.268925e-04	ci right 7.753063e-04	k: 3724	n:4960000
Cons ci ratio: 6.284951e-05	ci left: 9.986950e-01	ci right 9.987580e-01	k: 4953685	n:4960000
KS ci ratio: 1.156314e-01	ci left: 2.182563e-04	ci right 2.452360e-04	k: 1148	n:4960000
FANCD2   4960000 perm   10390 sec   (477 perm/sec)   p_kst 2.314516e-04   p_cons 9.987268e-01   p_joint 7.508065e-04

Joint ci ratio: 6.410904e-02	ci left: 7.276077e-04	ci right 7.759951e-04	k: 3735	n:4970000
Cons ci ratio: 6.275280e-05	ci left: 9.986964e-01	ci right 9.987593e-01	k: 4963679	n:4970000
KS ci ratio: 1.152807e-01	ci left: 2.191850e-04	ci right 2.461916e-04	k: 1155	n:4970000
FANCD2   4970000 perm   10432 sec   (476 perm/sec)   p_kst 2.323944e-04   p_cons 9.987282e-01   p_joint 7.515091e-04

Joint ci ratio: 6.405764e-02	ci left: 7.273322e-04	ci right 7.756610e-04	k: 3741	n:4980000
Cons ci ratio: 6.267628e-05	ci left: 9.986970e-01	ci right 9.987598e-01	k: 4973669	n:4980000
KS ci ratio: 1.151811e-01	ci left: 2.191349e-04	ci right 2.461104e-04	k: 1157	n:4980000
FANCD2   4980000 perm   10474 sec   (475 perm/sec)   p_kst 2.323293e-04   p_cons 9.987287e-01   p_joint 7.512048e-04

Joint ci ratio: 6.405768e-02	ci left: 7.258746e-04	ci right 7.741066e-04	k: 3741	n:4990000
Cons ci ratio: 6.262968e-05	ci left: 9.986964e-01	ci right 9.987591e-01	k: 4983653	n:4990000
KS ci ratio: 1.150322e-01	ci left: 2.192796e-04	ci right 2.462357e-04	k: 1160	n:4990000
FANCD2   4990000 perm   10517 sec   (474 perm/sec)   p_kst 2.324649e-04   p_cons 9.987281e-01   p_joint 7.496994e-04

Joint ci ratio: 6.398932e-02	ci left: 7.259972e-04	ci right 7.741840e-04	k: 3749	n:5000000
Cons ci ratio: 6.254869e-05	ci left: 9.986972e-01	ci right 9.987598e-01	k: 4993644	n:5000000
KS ci ratio: 1.149332e-01	ci left: 2.192296e-04	ci right 2.461548e-04	k: 1162	n:5000000
FANCD2   5000000 perm   10560 sec   (473 perm/sec)   p_kst 2.324000e-04   p_cons 9.987288e-01   p_joint 7.498000e-04

Outputting figure to mutsig2_images.part000000000062/FANCD2.9_4663_5000000_0.0002324_0.99873_0.0007498.png
                gene_name: FANCD2
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00023 
        ci_ks_bounds_left: 0.00022 
       ci_ks_bounds_right: 0.00025 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.00075 
     ci_joint_bounds_left: 0.00073 
    ci_joint_bounds_right: 0.00077 

Current progress: 20 percent done.
FAM78B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
FAM78B   10000 perm   2 sec   (6269 perm/sec)   p_kst 2.633000e-01   p_cons 5.575000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000062/FAM78B.7_794_10000_0.2633_0.5575_0.4286.png
                gene_name: FAM78B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 22 percent done.
FAM55D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
FAM55D   10000 perm   2 sec   (5848 perm/sec)   p_kst 8.178000e-01   p_cons 5.498000e-01   p_joint 9.447000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55D.6_1655_10000_0.8178_0.5498_0.9447.png
                gene_name: FAM55D
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 24 percent done.
FAM65B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
FAM65B   10000 perm   2 sec   (5222 perm/sec)   p_kst 8.800000e-03   p_cons 7.735000e-01   p_joint 4.660000e-02

Joint ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
Cons ci ratio: 1.534369e-02	ci left: 7.595143e-01	ci right 7.713084e-01	k: 15309	n:20000
KS ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
FAM65B   20000 perm   4 sec   (4705 perm/sec)   p_kst 9.450000e-03   p_cons 7.654500e-01   p_joint 2.040000e-02

Joint ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
Cons ci ratio: 1.260191e-02	ci left: 7.584817e-01	ci right 7.681340e-01	k: 22900	n:30000
KS ci ratio: 2.406518e-01	ci left: 7.711591e-03	ci right 9.851836e-03	k: 262	n:30000
FAM65B   30000 perm   7 sec   (4502 perm/sec)   p_kst 8.733333e-03   p_cons 7.633333e-01   p_joint 2.306667e-02

Joint ci ratio: 1.330971e-01	ci left: 1.981067e-02	ci right 2.265943e-02	k: 848	n:40000
Cons ci ratio: 1.088362e-02	ci left: 7.601342e-01	ci right 7.684774e-01	k: 30573	n:40000
KS ci ratio: 2.071242e-01	ci left: 7.955470e-03	ci right 9.816879e-03	k: 354	n:40000
FAM65B   40000 perm   9 sec   (4361 perm/sec)   p_kst 8.850000e-03   p_cons 7.643250e-01   p_joint 2.120000e-02

Joint ci ratio: 1.101127e-01	ci left: 2.335720e-02	ci right 2.609836e-02	k: 1235	n:50000
Cons ci ratio: 9.769325e-03	ci left: 7.592877e-01	ci right 7.667618e-01	k: 38152	n:50000
KS ci ratio: 1.825282e-01	ci left: 8.305354e-03	ci right 9.992373e-03	k: 456	n:50000
FAM65B   50000 perm   12 sec   (4256 perm/sec)   p_kst 9.120000e-03   p_cons 7.630400e-01   p_joint 2.470000e-02

Joint ci ratio: 1.073674e-01	ci left: 2.056523e-02	ci right 2.291468e-02	k: 1303	n:60000
Cons ci ratio: 8.905968e-03	ci left: 7.601124e-01	ci right 7.669288e-01	k: 45812	n:60000
KS ci ratio: 1.696804e-01	ci left: 8.068202e-03	ci right 9.579883e-03	k: 528	n:60000
FAM65B   60000 perm   14 sec   (4158 perm/sec)   p_kst 8.800000e-03   p_cons 7.635333e-01   p_joint 2.171667e-02

Joint ci ratio: 1.090384e-01	ci left: 1.713919e-02	ci right 1.912961e-02	k: 1268	n:70000
Cons ci ratio: 8.088118e-03	ci left: 7.672804e-01	ci right 7.735257e-01	k: 53929	n:70000
KS ci ratio: 1.564767e-01	ci left: 8.190062e-03	ci right 9.593959e-03	k: 621	n:70000
FAM65B   70000 perm   17 sec   (4077 perm/sec)   p_kst 8.871429e-03   p_cons 7.704143e-01   p_joint 1.811429e-02

Joint ci ratio: 9.431321e-02	ci left: 2.013967e-02	ci right 2.214526e-02	k: 1690	n:80000
Cons ci ratio: 7.563106e-03	ci left: 7.676077e-01	ci right 7.734477e-01	k: 61643	n:80000
KS ci ratio: 1.462521e-01	ci left: 8.248748e-03	ci right 9.562238e-03	k: 711	n:80000
FAM65B   80000 perm   20 sec   (4004 perm/sec)   p_kst 8.887500e-03   p_cons 7.705375e-01   p_joint 2.112500e-02

Joint ci ratio: 9.039586e-02	ci left: 1.954069e-02	ci right 2.140151e-02	k: 1841	n:90000
Cons ci ratio: 7.128856e-03	ci left: 7.678612e-01	ci right 7.733658e-01	k: 69356	n:90000
KS ci ratio: 1.383242e-01	ci left: 8.232338e-03	ci right 9.466298e-03	k: 795	n:90000
FAM65B   90000 perm   23 sec   (3933 perm/sec)   p_kst 8.833333e-03   p_cons 7.706222e-01   p_joint 2.045556e-02

Joint ci ratio: 8.528327e-02	ci left: 1.980689e-02	ci right 2.158107e-02	k: 2068	n:100000
Cons ci ratio: 7.190103e-03	ci left: 7.455578e-01	ci right 7.509478e-01	k: 74826	n:100000
KS ci ratio: 1.312592e-01	ci left: 8.259449e-03	ci right 9.429307e-03	k: 883	n:100000
FAM65B   100000 perm   26 sec   (3867 perm/sec)   p_kst 8.830000e-03   p_cons 7.482600e-01   p_joint 2.068000e-02

Joint ci ratio: 8.604582e-02	ci left: 1.772076e-02	ci right 1.932295e-02	k: 2036	n:110000
Cons ci ratio: 6.865024e-03	ci left: 7.451587e-01	ci right 7.503009e-01	k: 82251	n:110000
KS ci ratio: 1.255028e-01	ci left: 8.238903e-03	ci right 9.350865e-03	k: 966	n:110000
FAM65B   110000 perm   29 sec   (3804 perm/sec)   p_kst 8.781818e-03   p_cons 7.477364e-01   p_joint 1.850909e-02

Joint ci ratio: 8.387916e-02	ci left: 1.712468e-02	ci right 1.863208e-02	k: 2144	n:120000
Cons ci ratio: 6.570926e-03	ci left: 7.453746e-01	ci right 7.502968e-01	k: 89741	n:120000
KS ci ratio: 1.199255e-01	ci left: 8.295481e-03	ci right 9.361793e-03	k: 1058	n:120000
FAM65B   120000 perm   32 sec   (3741 perm/sec)   p_kst 8.816667e-03   p_cons 7.478417e-01   p_joint 1.786667e-02

Joint ci ratio: 7.372387e-02	ci left: 2.049933e-02	ci right 2.207597e-02	k: 2766	n:130000
Cons ci ratio: 6.321566e-03	ci left: 7.449670e-01	ci right 7.496989e-01	k: 97154	n:130000
KS ci ratio: 1.146299e-01	ci left: 8.404065e-03	ci right 9.433405e-03	k: 1158	n:130000
FAM65B   130000 perm   35 sec   (3683 perm/sec)   p_kst 8.907692e-03   p_cons 7.473385e-01   p_joint 2.127692e-02

Joint ci ratio: 7.221265e-02	ci left: 1.986934e-02	ci right 2.136489e-02	k: 2885	n:140000
Cons ci ratio: 6.086704e-03	ci left: 7.453589e-01	ci right 7.499166e-01	k: 104670	n:140000
KS ci ratio: 1.103333e-01	ci left: 8.442440e-03	ci right 9.435201e-03	k: 1250	n:140000
FAM65B   140000 perm   39 sec   (3627 perm/sec)   p_kst 8.928571e-03   p_cons 7.476429e-01   p_joint 2.060714e-02

Joint ci ratio: 7.207258e-02	ci left: 1.864249e-02	ci right 2.004284e-02	k: 2900	n:150000
Cons ci ratio: 5.872880e-03	ci left: 7.459151e-01	ci right 7.503153e-01	k: 112218	n:150000
KS ci ratio: 1.067674e-01	ci left: 8.430891e-03	ci right 9.388237e-03	k: 1335	n:150000
FAM65B   150000 perm   42 sec   (3571 perm/sec)   p_kst 8.900000e-03   p_cons 7.481200e-01   p_joint 1.933333e-02

Joint ci ratio: 7.155383e-02	ci left: 1.775324e-02	ci right 1.907679e-02	k: 2945	n:160000
Cons ci ratio: 5.681884e-03	ci left: 7.462850e-01	ci right 7.505435e-01	k: 119747	n:160000
KS ci ratio: 1.035263e-01	ci left: 8.421237e-03	ci right 9.346690e-03	k: 1420	n:160000
FAM65B   160000 perm   45 sec   (3520 perm/sec)   p_kst 8.875000e-03   p_cons 7.484188e-01   p_joint 1.840625e-02

Joint ci ratio: 7.030501e-02	ci left: 1.732704e-02	ci right 1.859535e-02	k: 3052	n:170000
Cons ci ratio: 5.509585e-03	ci left: 7.465306e-01	ci right 7.506609e-01	k: 127262	n:170000
KS ci ratio: 1.001283e-01	ci left: 8.487675e-03	ci right 9.388015e-03	k: 1518	n:170000
FAM65B   170000 perm   49 sec   (3471 perm/sec)   p_kst 8.929412e-03   p_cons 7.486000e-01   p_joint 1.795294e-02

Joint ci ratio: 6.883100e-02	ci left: 1.709039e-02	ci right 1.831410e-02	k: 3185	n:180000
Cons ci ratio: 5.350640e-03	ci left: 7.468509e-01	ci right 7.508633e-01	k: 134795	n:180000
KS ci ratio: 9.707467e-02	ci left: 8.541750e-03	ci right 9.418619e-03	k: 1615	n:180000
FAM65B   180000 perm   53 sec   (3425 perm/sec)   p_kst 8.972222e-03   p_cons 7.488611e-01   p_joint 1.769444e-02

Outputting figure to mutsig2_images.part000000000062/FAM65B.6_3305_180000_0.0089722_0.74886_0.017694.png
                gene_name: FAM65B
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 26 percent done.
FAM71D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
FAM71D   10000 perm   2 sec   (5729 perm/sec)   p_kst 2.587000e-01   p_cons 7.013000e-01   p_joint 3.898000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71D.6_1293_10000_0.2587_0.7013_0.3898.png
                gene_name: FAM71D
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 28 percent done.
FAM55A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 1.061910e-02	ci left: 9.265789e-01	ci right 9.365679e-01	k: 9317	n:10000
FAM55A   10000 perm   2 sec   (6011 perm/sec)   p_kst 9.317000e-01   p_cons 3.202000e-01   p_joint 7.190000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55A.5_1234_10000_0.9317_0.3202_0.719.png
                gene_name: FAM55A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 30 percent done.
FAM55B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 1.037238e-03	ci left: 9.986945e-01	ci right 9.997798e-01	k: 9994	n:10000
KS ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
FAM55B   10000 perm   2 sec   (5822 perm/sec)   p_kst 5.700000e-02   p_cons 9.994000e-01   p_joint 1.743000e-01

Joint ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
Cons ci ratio: 9.197125e-04	ci left: 9.983954e-01	ci right 9.993499e-01	k: 19979	n:20000
KS ci ratio: 1.104472e-01	ci left: 5.596855e-02	ci right 6.256031e-02	k: 1184	n:20000
FAM55B   20000 perm   4 sec   (5214 perm/sec)   p_kst 5.920000e-02   p_cons 9.989500e-01   p_joint 1.215500e-01

Joint ci ratio: 4.213204e-02	ci left: 2.191932e-01	ci right 2.286604e-01	k: 6717	n:30000
Cons ci ratio: 7.622796e-04	ci left: 9.984555e-01	ci right 9.992427e-01	k: 29967	n:30000
KS ci ratio: 8.949993e-02	ci left: 5.740394e-02	ci right 6.281498e-02	k: 1802	n:30000
FAM55B   30000 perm   6 sec   (4971 perm/sec)   p_kst 6.006667e-02   p_cons 9.989000e-01   p_joint 2.239000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55B.5_1704_30000_0.060067_0.9989_0.2239.png
                gene_name: FAM55B
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
FAM71A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
KS ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
FAM71A   10000 perm   2 sec   (5544 perm/sec)   p_kst 9.514000e-01   p_cons 7.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM71A.5_1789_10000_0.9514_0.794_1.png
                gene_name: FAM71A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
FAM83G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
Cons ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
KS ci ratio: 3.415440e-02	ci left: 5.586236e-01	ci right 5.781366e-01	k: 5684	n:10000
FAM83G   10000 perm   2 sec   (5817 perm/sec)   p_kst 5.684000e-01   p_cons 7.915000e-01   p_joint 8.672000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83G.5_2492_10000_0.5684_0.7915_0.8672.png
                gene_name: FAM83G
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 37 percent done.
FAM91A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
Cons ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
KS ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
FAM91A1   10000 perm   2 sec   (5810 perm/sec)   p_kst 9.244000e-01   p_cons 3.543000e-01   p_joint 7.517000e-01

Outputting figure to mutsig2_images.part000000000062/FAM91A1.5_2613_10000_0.9244_0.3543_0.7517.png
                gene_name: FAM91A1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 39 percent done.
FAM98A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
Cons ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
KS ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
FAM98A   10000 perm   2 sec   (5680 perm/sec)   p_kst 8.498000e-01   p_cons 2.713000e-01   p_joint 7.827000e-01

Outputting figure to mutsig2_images.part000000000062/FAM98A.5_1589_10000_0.8498_0.2713_0.7827.png
                gene_name: FAM98A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 41 percent done.
FANCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
Cons ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
KS ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
FANCA   10000 perm   2 sec   (4836 perm/sec)   p_kst 4.370000e-01   p_cons 9.848000e-01   p_joint 6.382000e-01

Outputting figure to mutsig2_images.part000000000062/FANCA.5_4545_10000_0.437_0.9848_0.6382.png
                gene_name: FANCA
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 43 percent done.
FANCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
KS ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
FANCI   10000 perm   2 sec   (4805 perm/sec)   p_kst 1.052000e-01   p_cons 6.197000e-01   p_joint 2.661000e-01

Joint ci ratio: 5.455978e-02	ci left: 1.995222e-01	ci right 2.107636e-01	k: 4102	n:20000
Cons ci ratio: 2.180071e-02	ci left: 6.110238e-01	ci right 6.245419e-01	k: 12356	n:20000
KS ci ratio: 7.945270e-02	ci left: 1.041727e-01	ci right 1.128415e-01	k: 2169	n:20000
FANCI   20000 perm   5 sec   (4360 perm/sec)   p_kst 1.084500e-01   p_cons 6.178000e-01   p_joint 2.051000e-01

Outputting figure to mutsig2_images.part000000000062/FANCI.5_4135_20000_0.10845_0.6178_0.2051.png
                gene_name: FANCI
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 46 percent done.
FAM55C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
FAM55C   10000 perm   2 sec   (6263 perm/sec)   p_kst 8.268000e-01   p_cons 3.740000e-01   p_joint 9.334000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55C.4_1700_10000_0.8268_0.374_0.9334.png
                gene_name: FAM55C
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 48 percent done.
FAM71C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
Cons ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
FAM71C   10000 perm   2 sec   (6358 perm/sec)   p_kst 4.110000e-02   p_cons 1.141000e-01   p_joint 4.570000e-02

Joint ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
Cons ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
KS ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
FAM71C   20000 perm   4 sec   (5649 perm/sec)   p_kst 4.470000e-02   p_cons 1.164500e-01   p_joint 5.230000e-02

Joint ci ratio: 9.633932e-02	ci left: 4.977495e-02	ci right 5.484553e-02	k: 1568	n:30000
Cons ci ratio: 5.917698e-02	ci left: 1.238111e-01	ci right 1.313945e-01	k: 3827	n:30000
KS ci ratio: 1.070718e-01	ci left: 4.047235e-02	ci right 4.508339e-02	k: 1282	n:30000
FAM71C   30000 perm   6 sec   (5376 perm/sec)   p_kst 4.273333e-02   p_cons 1.275667e-01   p_joint 5.226667e-02

Joint ci ratio: 7.536449e-02	ci left: 6.095755e-02	ci right 6.575608e-02	k: 2533	n:40000
Cons ci ratio: 5.139329e-02	ci left: 1.237021e-01	ci right 1.302521e-01	k: 5078	n:40000
KS ci ratio: 9.232391e-02	ci left: 4.113056e-02	ci right 4.513611e-02	k: 1724	n:40000
FAM71C   40000 perm   8 sec   (5184 perm/sec)   p_kst 4.310000e-02   p_cons 1.269500e-01   p_joint 6.332500e-02

Outputting figure to mutsig2_images.part000000000062/FAM71C.4_734_40000_0.0431_0.12695_0.063325.png
                gene_name: FAM71C
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 50 percent done.
FAM82B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
Cons ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
KS ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
FAM82B   10000 perm   2 sec   (6236 perm/sec)   p_kst 1.147000e-01   p_cons 2.400000e-02   p_joint 4.580000e-02

Joint ci ratio: 1.335450e-01	ci left: 3.853576e-02	ci right 4.409860e-02	k: 825	n:20000
Cons ci ratio: 1.775177e-01	ci left: 2.168415e-02	ci right 2.595584e-02	k: 475	n:20000
KS ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
FAM82B   20000 perm   4 sec   (5563 perm/sec)   p_kst 1.110500e-01   p_cons 2.375000e-02   p_joint 4.125000e-02

Joint ci ratio: 1.103944e-01	ci left: 3.810255e-02	ci right 4.258702e-02	k: 1209	n:30000
Cons ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
KS ci ratio: 6.335513e-02	ci left: 1.095699e-01	ci right 1.167719e-01	k: 3394	n:30000
FAM82B   30000 perm   6 sec   (5300 perm/sec)   p_kst 1.131333e-01   p_cons 2.406667e-02   p_joint 4.030000e-02

Joint ci ratio: 6.239008e-02	ci left: 8.701563e-02	ci right 9.264408e-02	k: 3592	n:40000
Cons ci ratio: 1.249219e-01	ci left: 2.252228e-02	ci right 2.554736e-02	k: 960	n:40000
KS ci ratio: 5.489924e-02	ci left: 1.099378e-01	ci right 1.161685e-01	k: 4521	n:40000
FAM82B   40000 perm   8 sec   (5120 perm/sec)   p_kst 1.130250e-01   p_cons 2.400000e-02   p_joint 8.980000e-02

Joint ci ratio: 6.958581e-02	ci left: 5.759951e-02	ci right 6.177179e-02	k: 2983	n:50000
Cons ci ratio: 1.109438e-01	ci left: 2.300693e-02	ci right 2.572868e-02	k: 1217	n:50000
KS ci ratio: 4.964224e-02	ci left: 1.081207e-01	ci right 1.136445e-01	k: 5543	n:50000
FAM82B   50000 perm   10 sec   (4979 perm/sec)   p_kst 1.108600e-01   p_cons 2.434000e-02   p_joint 5.966000e-02

Joint ci ratio: 6.247931e-02	ci left: 5.963985e-02	ci right 6.350269e-02	k: 3693	n:60000
Cons ci ratio: 1.010510e-01	ci left: 2.322894e-02	ci right 2.571735e-02	k: 1467	n:60000
KS ci ratio: 4.553206e-02	ci left: 1.074410e-01	ci right 1.124635e-01	k: 6596	n:60000
FAM82B   60000 perm   12 sec   (4860 perm/sec)   p_kst 1.099333e-01   p_cons 2.445000e-02   p_joint 6.155000e-02

Joint ci ratio: 5.898829e-02	ci left: 5.758967e-02	ci right 6.110411e-02	k: 4153	n:70000
Cons ci ratio: 9.388347e-02	ci left: 2.315798e-02	ci right 2.545311e-02	k: 1700	n:70000
KS ci ratio: 4.213762e-02	ci left: 1.077053e-01	ci right 1.123556e-01	k: 7701	n:70000
FAM82B   70000 perm   15 sec   (4754 perm/sec)   p_kst 1.100143e-01   p_cons 2.428571e-02   p_joint 5.932857e-02

Outputting figure to mutsig2_images.part000000000062/FAM82B.4_985_70000_0.11001_0.024286_0.059329.png
                gene_name: FAM82B
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 52 percent done.
FAM83H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
KS ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
FAM83H   10000 perm   2 sec   (5208 perm/sec)   p_kst 8.539000e-01   p_cons 7.119000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM83H.4_3556_10000_0.8539_0.7119_1.png
                gene_name: FAM83H
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
FAM98C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
FAM98C   10000 perm   2 sec   (5992 perm/sec)   p_kst 1.020000e-01   p_cons 1.024000e-01   p_joint 7.880000e-02

Joint ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
Cons ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
KS ci ratio: 8.127078e-02	ci left: 9.994945e-02	ci right 1.084660e-01	k: 2083	n:20000
FAM98C   20000 perm   4 sec   (5353 perm/sec)   p_kst 1.041500e-01   p_cons 1.032000e-01   p_joint 7.695000e-02

Outputting figure to mutsig2_images.part000000000062/FAM98C.4_1082_20000_0.10415_0.1032_0.07695.png
                gene_name: FAM98C
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.081 

Current progress: 57 percent done.
FANCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
FANCB   10000 perm   2 sec   (5559 perm/sec)   p_kst 2.561000e-01   p_cons 8.952000e-01   p_joint 5.752000e-01

Outputting figure to mutsig2_images.part000000000062/FANCB.4_2612_10000_0.2561_0.8952_0.5752.png
                gene_name: FANCB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 59 percent done.
FANCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
Cons ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
KS ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
FANCG   10000 perm   2 sec   (5811 perm/sec)   p_kst 2.671000e-01   p_cons 7.527000e-01   p_joint 4.815000e-01

Outputting figure to mutsig2_images.part000000000062/FANCG.4_1925_10000_0.2671_0.7527_0.4815.png
                gene_name: FANCG
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 61 percent done.
FAM53C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
Cons ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
KS ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
FAM53C   10000 perm   1 sec   (7007 perm/sec)   p_kst 9.281000e-01   p_cons 1.496000e-01   p_joint 4.874000e-01

Outputting figure to mutsig2_images.part000000000062/FAM53C.3_1195_10000_0.9281_0.1496_0.4874.png
                gene_name: FAM53C
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 63 percent done.
FAM58A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
FAM58A   10000 perm   1 sec   (6815 perm/sec)   p_kst 4.000000e-03   p_cons 2.578000e-01   p_joint 7.900000e-03

Joint ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
Cons ci ratio: 4.617429e-02	ci left: 2.587442e-01	ci right 2.710242e-01	k: 5297	n:20000
KS ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
FAM58A   20000 perm   3 sec   (5984 perm/sec)   p_kst 4.400000e-03   p_cons 2.648500e-01   p_joint 2.200000e-02

Joint ci ratio: 2.580461e-01	ci left: 6.648515e-03	ci right 8.648608e-03	k: 228	n:30000
Cons ci ratio: 3.759826e-02	ci left: 2.609398e-01	ci right 2.709722e-01	k: 7978	n:30000
KS ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
FAM58A   30000 perm   5 sec   (5676 perm/sec)   p_kst 4.200000e-03   p_cons 2.659333e-01   p_joint 7.600000e-03

Joint ci ratio: 2.476424e-01	ci left: 5.454280e-03	ci right 7.018704e-03	k: 248	n:40000
Cons ci ratio: 3.362747e-02	ci left: 2.492922e-01	ci right 2.578436e-01	k: 10142	n:40000
KS ci ratio: 2.965237e-01	ci left: 3.705617e-03	ci right 5.017941e-03	k: 173	n:40000
FAM58A   40000 perm   7 sec   (5475 perm/sec)   p_kst 4.325000e-03   p_cons 2.535500e-01   p_joint 6.200000e-03

Joint ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
Cons ci ratio: 2.994878e-02	ci left: 2.513630e-01	ci right 2.590255e-01	k: 12759	n:50000
KS ci ratio: 2.613261e-01	ci left: 3.894862e-03	ci right 5.083797e-03	k: 223	n:50000
FAM58A   50000 perm   9 sec   (5317 perm/sec)   p_kst 4.460000e-03   p_cons 2.551800e-01   p_joint 1.750000e-02

Joint ci ratio: 1.312452e-01	ci left: 1.368771e-02	ci right 1.562632e-02	k: 878	n:60000
Cons ci ratio: 2.726170e-02	ci left: 2.527770e-01	ci right 2.597800e-01	k: 15376	n:60000
KS ci ratio: 2.358406e-01	ci left: 4.042930e-03	ci right 5.139171e-03	k: 274	n:60000
FAM58A   60000 perm   12 sec   (5170 perm/sec)   p_kst 4.566667e-03   p_cons 2.562667e-01   p_joint 1.463333e-02

Joint ci ratio: 1.433374e-01	ci left: 9.813216e-03	ci right 1.134205e-02	k: 739	n:70000
Cons ci ratio: 2.521377e-02	ci left: 2.534244e-01	ci right 2.599100e-01	k: 17966	n:70000
KS ci ratio: 2.196685e-01	ci left: 4.031170e-03	ci right 5.039151e-03	k: 316	n:70000
FAM58A   70000 perm   14 sec   (5042 perm/sec)   p_kst 4.514286e-03   p_cons 2.566571e-01   p_joint 1.055714e-02

Joint ci ratio: 1.409548e-01	ci left: 8.899705e-03	ci right 1.026122e-02	k: 765	n:80000
Cons ci ratio: 2.289907e-02	ci left: 2.650202e-01	ci right 2.711716e-01	k: 21447	n:80000
KS ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
FAM58A   80000 perm   16 sec   (4927 perm/sec)   p_kst 4.600000e-03   p_cons 2.680875e-01   p_joint 9.562500e-03

Joint ci ratio: 1.475840e-01	ci left: 7.203498e-03	ci right 8.361900e-03	k: 699	n:90000
Cons ci ratio: 2.160964e-02	ci left: 2.648315e-01	ci right 2.706280e-01	k: 24095	n:90000
KS ci ratio: 1.910572e-01	ci left: 4.210713e-03	ci right 5.110561e-03	k: 418	n:90000
FAM58A   90000 perm   19 sec   (4817 perm/sec)   p_kst 4.644444e-03   p_cons 2.677222e-01   p_joint 7.766667e-03

Joint ci ratio: 1.640109e-01	ci left: 5.214008e-03	ci right 6.155012e-03	k: 567	n:100000
Cons ci ratio: 2.049932e-02	ci left: 2.650074e-01	ci right 2.705061e-01	k: 26775	n:100000
KS ci ratio: 1.835557e-01	ci left: 4.123217e-03	ci right 4.965918e-03	k: 453	n:100000
FAM58A   100000 perm   21 sec   (4714 perm/sec)   p_kst 4.530000e-03   p_cons 2.677500e-01   p_joint 5.670000e-03

Joint ci ratio: 1.340133e-01	ci left: 7.200698e-03	ci right 8.243690e-03	k: 848	n:110000
Cons ci ratio: 1.958056e-02	ci left: 2.644326e-01	ci right 2.696706e-01	k: 29375	n:110000
KS ci ratio: 1.742094e-01	ci left: 4.182593e-03	ci right 4.989325e-03	k: 503	n:110000
FAM58A   110000 perm   24 sec   (4617 perm/sec)   p_kst 4.572727e-03   p_cons 2.670455e-01   p_joint 7.709091e-03

Joint ci ratio: 1.291668e-01	ci left: 7.124459e-03	ci right 8.116225e-03	k: 913	n:120000
Cons ci ratio: 1.877635e-02	ci left: 2.639335e-01	ci right 2.689445e-01	k: 31972	n:120000
KS ci ratio: 1.675319e-01	ci left: 4.161098e-03	ci right 4.929815e-03	k: 544	n:120000
FAM58A   120000 perm   27 sec   (4527 perm/sec)   p_kst 4.533333e-03   p_cons 2.664333e-01   p_joint 7.608333e-03

Joint ci ratio: 8.730979e-02	ci left: 1.460212e-02	ci right 1.594271e-02	k: 1984	n:130000
Cons ci ratio: 1.803634e-02	ci left: 2.641057e-01	ci right 2.689201e-01	k: 34646	n:130000
KS ci ratio: 1.699258e-01	ci left: 3.730430e-03	ci right 4.430438e-03	k: 529	n:130000
FAM58A   130000 perm   29 sec   (4438 perm/sec)   p_kst 4.069231e-03   p_cons 2.665077e-01   p_joint 1.526154e-02

Joint ci ratio: 7.981964e-02	ci left: 1.625927e-02	ci right 1.761799e-02	k: 2370	n:140000
Cons ci ratio: 1.739205e-02	ci left: 2.639289e-01	ci right 2.685665e-01	k: 37274	n:140000
KS ci ratio: 1.627130e-01	ci left: 3.792571e-03	ci right 4.471077e-03	k: 577	n:140000
FAM58A   140000 perm   32 sec   (4355 perm/sec)   p_kst 4.121429e-03   p_cons 2.662429e-01   p_joint 1.692857e-02

Joint ci ratio: 6.546314e-02	ci left: 2.258184e-02	ci right 2.411667e-02	k: 3501	n:150000
Cons ci ratio: 1.684586e-02	ci left: 2.630005e-01	ci right 2.674752e-01	k: 39785	n:150000
KS ci ratio: 1.565983e-01	ci left: 3.834156e-03	ci right 4.491904e-03	k: 623	n:150000
FAM58A   150000 perm   35 sec   (4277 perm/sec)   p_kst 4.153333e-03   p_cons 2.652333e-01   p_joint 2.334000e-02

Joint ci ratio: 6.827394e-02	ci left: 1.949780e-02	ci right 2.088216e-02	k: 3229	n:160000
Cons ci ratio: 1.630215e-02	ci left: 2.632812e-01	ci right 2.676148e-01	k: 42471	n:160000
KS ci ratio: 1.523863e-01	ci left: 3.804811e-03	ci right 4.438366e-03	k: 658	n:160000
FAM58A   160000 perm   38 sec   (4201 perm/sec)   p_kst 4.112500e-03   p_cons 2.654437e-01   p_joint 2.018125e-02

Joint ci ratio: 6.911576e-02	ci left: 1.792833e-02	ci right 1.921757e-02	k: 3156	n:170000
Cons ci ratio: 1.581267e-02	ci left: 2.634136e-01	ci right 2.676179e-01	k: 45137	n:170000
KS ci ratio: 1.476446e-01	ci left: 3.824449e-03	ci right 4.439710e-03	k: 701	n:170000
FAM58A   170000 perm   41 sec   (4128 perm/sec)   p_kst 4.123529e-03   p_cons 2.655118e-01   p_joint 1.856471e-02

Joint ci ratio: 6.736075e-02	ci left: 1.784423e-02	ci right 1.909356e-02	k: 3323	n:180000
Cons ci ratio: 1.534730e-02	ci left: 2.639764e-01	ci right 2.680645e-01	k: 47883	n:180000
KS ci ratio: 1.436104e-01	ci left: 3.826106e-03	ci right 4.423372e-03	k: 741	n:180000
FAM58A   180000 perm   44 sec   (4062 perm/sec)   p_kst 4.116667e-03   p_cons 2.660167e-01   p_joint 1.846111e-02

Joint ci ratio: 6.938600e-02	ci left: 1.594748e-02	ci right 1.709892e-02	k: 3138	n:190000
Cons ci ratio: 1.492212e-02	ci left: 2.644447e-01	ci right 2.684256e-01	k: 50622	n:190000
KS ci ratio: 1.398898e-01	ci left: 3.827792e-03	ci right 4.408551e-03	k: 781	n:190000
FAM58A   190000 perm   48 sec   (3994 perm/sec)   p_kst 4.110526e-03   p_cons 2.664316e-01   p_joint 1.651579e-02

Joint ci ratio: 6.822155e-02	ci left: 1.568565e-02	ci right 1.679843e-02	k: 3247	n:200000
Cons ci ratio: 1.454603e-02	ci left: 2.644485e-01	ci right 2.683283e-01	k: 53277	n:200000
KS ci ratio: 1.366111e-01	ci left: 3.819830e-03	ci right 4.384692e-03	k: 819	n:200000
FAM58A   200000 perm   51 sec   (3933 perm/sec)   p_kst 4.095000e-03   p_cons 2.663850e-01   p_joint 1.623500e-02

Joint ci ratio: 6.611971e-02	ci left: 1.591730e-02	ci right 1.701039e-02	k: 3456	n:210000
Cons ci ratio: 1.418647e-02	ci left: 2.647429e-01	ci right 2.685302e-01	k: 55993	n:210000
KS ci ratio: 1.327012e-01	ci left: 3.863413e-03	ci right 4.417079e-03	k: 868	n:210000
FAM58A   210000 perm   54 sec   (3870 perm/sec)   p_kst 4.133333e-03   p_cons 2.666333e-01   p_joint 1.645714e-02

Joint ci ratio: 5.473629e-02	ci left: 2.215787e-02	ci right 2.340929e-02	k: 5011	n:220000
Cons ci ratio: 1.386374e-02	ci left: 2.646896e-01	ci right 2.683893e-01	k: 58638	n:220000
KS ci ratio: 1.301088e-01	ci left: 3.841661e-03	ci right 4.380624e-03	k: 903	n:220000
FAM58A   220000 perm   58 sec   (3813 perm/sec)   p_kst 4.104545e-03   p_cons 2.665364e-01   p_joint 2.277727e-02

Joint ci ratio: 5.332947e-02	ci left: 2.233972e-02	ci right 2.356799e-02	k: 5278	n:230000
Cons ci ratio: 1.355651e-02	ci left: 2.648023e-01	ci right 2.684209e-01	k: 61320	n:230000
KS ci ratio: 1.269855e-01	ci left: 3.863996e-03	ci right 4.392099e-03	k: 948	n:230000
FAM58A   230000 perm   61 sec   (3757 perm/sec)   p_kst 4.121739e-03   p_cons 2.666087e-01   p_joint 2.294783e-02

Joint ci ratio: 5.225286e-02	ci left: 2.231346e-02	ci right 2.351477e-02	k: 5498	n:240000
Cons ci ratio: 1.326855e-02	ci left: 2.649148e-01	ci right 2.684575e-01	k: 64004	n:240000
KS ci ratio: 1.243283e-01	ci left: 3.868460e-03	ci right 4.385295e-03	k: 989	n:240000
FAM58A   240000 perm   65 sec   (3702 perm/sec)   p_kst 4.120833e-03   p_cons 2.666833e-01   p_joint 2.290833e-02

Joint ci ratio: 5.125728e-02	ci left: 2.227373e-02	ci right 2.344937e-02	k: 5714	n:250000
Cons ci ratio: 1.299886e-02	ci left: 2.649991e-01	ci right 2.684703e-01	k: 66683	n:250000
KS ci ratio: 1.226098e-01	ci left: 3.822257e-03	ci right 4.325348e-03	k: 1017	n:250000
FAM58A   250000 perm   69 sec   (3649 perm/sec)   p_kst 4.068000e-03   p_cons 2.667320e-01   p_joint 2.285600e-02

Joint ci ratio: 5.045160e-02	ci left: 2.211949e-02	ci right 2.326811e-02	k: 5899	n:260000
Cons ci ratio: 1.274246e-02	ci left: 2.651544e-01	ci right 2.685585e-01	k: 69382	n:260000
KS ci ratio: 1.206138e-01	ci left: 3.802036e-03	ci right 4.293737e-03	k: 1051	n:260000
FAM58A   260000 perm   72 sec   (3597 perm/sec)   p_kst 4.042308e-03   p_cons 2.668538e-01   p_joint 2.268846e-02

Joint ci ratio: 4.994362e-02	ci left: 2.174998e-02	ci right 2.286771e-02	k: 6022	n:270000
Cons ci ratio: 1.249972e-02	ci left: 2.653283e-01	ci right 2.686693e-01	k: 72089	n:270000
KS ci ratio: 1.182755e-01	ci left: 3.812129e-03	ci right 4.294909e-03	k: 1093	n:270000
FAM58A   270000 perm   76 sec   (3544 perm/sec)   p_kst 4.048148e-03   p_cons 2.669963e-01   p_joint 2.230370e-02

Joint ci ratio: 4.990050e-02	ci left: 2.102590e-02	ci right 2.210546e-02	k: 6037	n:280000
Cons ci ratio: 1.228300e-02	ci left: 2.650876e-01	ci right 2.683673e-01	k: 74683	n:280000
KS ci ratio: 1.160682e-01	ci left: 3.821586e-03	ci right 4.295913e-03	k: 1135	n:280000
FAM58A   280000 perm   80 sec   (3494 perm/sec)   p_kst 4.053571e-03   p_cons 2.667250e-01   p_joint 2.156071e-02

Joint ci ratio: 4.979328e-02	ci left: 2.040287e-02	ci right 2.144812e-02	k: 6067	n:290000
Cons ci ratio: 1.206652e-02	ci left: 2.652081e-01	ci right 2.684311e-01	k: 77377	n:290000
KS ci ratio: 1.141260e-01	ci left: 3.820418e-03	ci right 4.286131e-03	k: 1174	n:290000
FAM58A   290000 perm   84 sec   (3444 perm/sec)   p_kst 4.048276e-03   p_cons 2.668172e-01   p_joint 2.092069e-02

Joint ci ratio: 5.217747e-02	ci left: 1.798460e-02	ci right 1.895140e-02	k: 5539	n:300000
Cons ci ratio: 1.186181e-02	ci left: 2.652978e-01	ci right 2.684667e-01	k: 80064	n:300000
KS ci ratio: 1.120007e-01	ci left: 3.838831e-03	ci right 4.297498e-03	k: 1219	n:300000
FAM58A   300000 perm   88 sec   (3398 perm/sec)   p_kst 4.063333e-03   p_cons 2.668800e-01   p_joint 1.846333e-02

Joint ci ratio: 5.429695e-02	ci left: 1.608631e-02	ci right 1.698728e-02	k: 5125	n:310000
Cons ci ratio: 1.167228e-02	ci left: 2.652114e-01	ci right 2.683284e-01	k: 82698	n:310000
KS ci ratio: 1.099897e-01	ci left: 3.856131e-03	ci right 4.308056e-03	k: 1264	n:310000
FAM58A   310000 perm   93 sec   (3351 perm/sec)   p_kst 4.077419e-03   p_cons 2.667677e-01   p_joint 1.653226e-02

Joint ci ratio: 5.335656e-02	ci left: 1.614472e-02	ci right 1.703282e-02	k: 5307	n:320000
Cons ci ratio: 1.149154e-02	ci left: 2.651309e-01	ci right 2.681983e-01	k: 85332	n:320000
KS ci ratio: 1.078357e-01	ci left: 3.890664e-03	ci right 4.337140e-03	k: 1315	n:320000
FAM58A   320000 perm   97 sec   (3306 perm/sec)   p_kst 4.109375e-03   p_cons 2.666625e-01   p_joint 1.658437e-02

Joint ci ratio: 5.332937e-02	ci left: 1.567930e-02	ci right 1.654135e-02	k: 5315	n:330000
Cons ci ratio: 1.131501e-02	ci left: 2.651917e-01	ci right 2.682124e-01	k: 88011	n:330000
KS ci ratio: 1.065893e-01	ci left: 3.864182e-03	ci right 4.302173e-03	k: 1346	n:330000
FAM58A   330000 perm   101 sec   (3261 perm/sec)   p_kst 4.078788e-03   p_cons 2.667000e-01   p_joint 1.610606e-02

Joint ci ratio: 5.288424e-02	ci left: 1.548220e-02	ci right 1.632608e-02	k: 5406	n:340000
Cons ci ratio: 1.114754e-02	ci left: 2.652082e-01	ci right 2.681840e-01	k: 90676	n:340000
KS ci ratio: 1.051936e-01	ci left: 3.853607e-03	ci right 4.284325e-03	k: 1382	n:340000
FAM58A   340000 perm   106 sec   (3218 perm/sec)   p_kst 4.064706e-03   p_cons 2.666941e-01   p_joint 1.590000e-02

Joint ci ratio: 5.570463e-02	ci left: 1.356264e-02	ci right 1.434258e-02	k: 4882	n:350000
Cons ci ratio: 1.098328e-02	ci left: 2.653666e-01	ci right 2.683001e-01	k: 93391	n:350000
KS ci ratio: 1.039986e-01	ci left: 3.832538e-03	ci right 4.255738e-03	k: 1414	n:350000
FAM58A   350000 perm   110 sec   (3178 perm/sec)   p_kst 4.040000e-03   p_cons 2.668314e-01   p_joint 1.394857e-02

Joint ci ratio: 5.770693e-02	ci left: 1.229020e-02	ci right 1.302323e-02	k: 4555	n:360000
Cons ci ratio: 1.083284e-02	ci left: 2.652725e-01	ci right 2.681646e-01	k: 96018	n:360000
KS ci ratio: 1.027366e-01	ci left: 3.820786e-03	ci right 4.237259e-03	k: 1449	n:360000
FAM58A   360000 perm   115 sec   (3138 perm/sec)   p_kst 4.025000e-03   p_cons 2.667167e-01   p_joint 1.265278e-02

Joint ci ratio: 5.693750e-02	ci left: 1.228837e-02	ci right 1.301119e-02	k: 4679	n:370000
Cons ci ratio: 1.068413e-02	ci left: 2.653403e-01	ci right 2.681931e-01	k: 98703	n:370000
KS ci ratio: 1.014508e-01	ci left: 3.814968e-03	ci right 4.225292e-03	k: 1486	n:370000
FAM58A   370000 perm   119 sec   (3099 perm/sec)   p_kst 4.016216e-03   p_cons 2.667649e-01   p_joint 1.264595e-02

Joint ci ratio: 5.303377e-02	ci left: 1.379764e-02	ci right 1.455190e-02	k: 5385	n:380000
Cons ci ratio: 1.054678e-02	ci left: 2.652051e-01	ci right 2.680195e-01	k: 101312	n:380000
KS ci ratio: 1.002122e-01	ci left: 3.809486e-03	ci right 4.213924e-03	k: 1523	n:380000
FAM58A   380000 perm   124 sec   (3062 perm/sec)   p_kst 4.007895e-03   p_cons 2.666105e-01   p_joint 1.417105e-02

Joint ci ratio: 5.514767e-02	ci left: 1.243690e-02	ci right 1.314473e-02	k: 4987	n:390000
Cons ci ratio: 1.041213e-02	ci left: 2.651692e-01	ci right 2.679471e-01	k: 103957	n:390000
KS ci ratio: 9.844950e-02	ci left: 3.849333e-03	ci right 4.250398e-03	k: 1578	n:390000
FAM58A   390000 perm   129 sec   (3023 perm/sec)   p_kst 4.046154e-03   p_cons 2.665564e-01   p_joint 1.278718e-02

Outputting figure to mutsig2_images.part000000000062/FAM58A.3_765_390000_0.0040462_0.26656_0.012787.png
                gene_name: FAM58A
               theta_stop: 0.098 
                    nperm: 390000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0038 
       ci_ks_bounds_right: 0.0043 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 65 percent done.
FAM65A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
Cons ci ratio: 1.467390e-03	ci left: 9.977780e-01	ci right 9.993076e-01	k: 9987	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
FAM65A   10000 perm   2 sec   (5748 perm/sec)   p_kst 3.900000e-03   p_cons 9.987000e-01   p_joint 5.200000e-02

Joint ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
Cons ci ratio: 1.109493e-03	ci left: 9.978006e-01	ci right 9.989466e-01	k: 19969	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
FAM65A   20000 perm   4 sec   (5129 perm/sec)   p_kst 3.950000e-03   p_cons 9.984500e-01   p_joint 2.195000e-02

Joint ci ratio: 1.776709e-01	ci left: 1.454675e-02	ci right 1.741477e-02	k: 478	n:30000
Cons ci ratio: 9.059348e-04	ci left: 9.979172e-01	ci right 9.988487e-01	k: 29953	n:30000
KS ci ratio: 3.556384e-01	ci left: 3.317477e-03	ci right 4.781146e-03	k: 120	n:30000
FAM65A   30000 perm   6 sec   (4873 perm/sec)   p_kst 4.000000e-03   p_cons 9.984333e-01   p_joint 1.593333e-02

Joint ci ratio: 1.282424e-01	ci left: 2.135945e-02	ci right 2.431039e-02	k: 912	n:40000
Cons ci ratio: 7.845789e-04	ci left: 9.979853e-01	ci right 9.987895e-01	k: 39937	n:40000
KS ci ratio: 3.054686e-01	ci left: 3.474429e-03	ci right 4.749221e-03	k: 163	n:40000
FAM65A   40000 perm   8 sec   (4724 perm/sec)   p_kst 4.075000e-03   p_cons 9.984250e-01   p_joint 2.280000e-02

Joint ci ratio: 8.642368e-02	ci left: 3.780948e-02	ci right 4.124425e-02	k: 1975	n:50000
Cons ci ratio: 7.104895e-04	ci left: 9.979869e-01	ci right 9.987133e-01	k: 49919	n:50000
KS ci ratio: 2.787349e-01	ci left: 3.391256e-03	ci right 4.507551e-03	k: 196	n:50000
FAM65A   50000 perm   11 sec   (4601 perm/sec)   p_kst 3.920000e-03   p_cons 9.983800e-01   p_joint 3.950000e-02

Joint ci ratio: 8.929893e-02	ci left: 2.972542e-02	ci right 3.252018e-02	k: 1866	n:60000
Cons ci ratio: 6.538512e-04	ci left: 9.979915e-01	ci right 9.986588e-01	k: 59901	n:60000
KS ci ratio: 2.541259e-01	ci left: 3.448285e-03	ci right 4.467286e-03	k: 236	n:60000
FAM65A   60000 perm   13 sec   (4492 perm/sec)   p_kst 3.933333e-03   p_cons 9.983500e-01   p_joint 3.110000e-02

Joint ci ratio: 7.415660e-02	ci left: 3.696044e-02	ci right 3.982084e-02	k: 2686	n:70000
Cons ci ratio: 6.266364e-04	ci left: 9.978883e-01	ci right 9.985264e-01	k: 69876	n:70000
KS ci ratio: 2.359184e-01	ci left: 3.465243e-03	ci right 4.405185e-03	k: 274	n:70000
FAM65A   70000 perm   16 sec   (4396 perm/sec)   p_kst 3.914286e-03   p_cons 9.982286e-01   p_joint 3.837143e-02

Joint ci ratio: 7.680090e-02	ci left: 3.032496e-02	ci right 3.275917e-02	k: 2522	n:80000
Cons ci ratio: 5.760988e-04	ci left: 9.979759e-01	ci right 9.985621e-01	k: 79863	n:80000
KS ci ratio: 2.232951e-01	ci left: 3.409082e-03	ci right 4.277510e-03	k: 306	n:80000
FAM65A   80000 perm   19 sec   (4309 perm/sec)   p_kst 3.825000e-03   p_cons 9.982875e-01   p_joint 3.152500e-02

Joint ci ratio: 7.589391e-02	ci left: 2.769520e-02	ci right 2.989087e-02	k: 2590	n:90000
Cons ci ratio: 5.462110e-04	ci left: 9.979726e-01	ci right 9.985278e-01	k: 89844	n:90000
KS ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
FAM65A   90000 perm   21 sec   (4229 perm/sec)   p_kst 4.000000e-03   p_cons 9.982667e-01   p_joint 2.877778e-02

Joint ci ratio: 8.303660e-02	ci left: 2.089401e-02	ci right 2.271388e-02	k: 2179	n:100000
Cons ci ratio: 5.204920e-04	ci left: 9.979709e-01	ci right 9.984995e-01	k: 99825	n:100000
KS ci ratio: 1.927253e-01	ci left: 3.722912e-03	ci right 4.526269e-03	k: 411	n:100000
FAM65A   100000 perm   24 sec   (4155 perm/sec)   p_kst 4.110000e-03   p_cons 9.982500e-01   p_joint 2.179000e-02

Joint ci ratio: 8.429192e-02	ci left: 1.846842e-02	ci right 2.010252e-02	k: 2120	n:110000
Cons ci ratio: 5.006173e-04	ci left: 9.979508e-01	ci right 9.984587e-01	k: 109804	n:110000
KS ci ratio: 1.846175e-01	ci left: 3.704944e-03	ci right 4.467024e-03	k: 448	n:110000
FAM65A   110000 perm   27 sec   (4082 perm/sec)   p_kst 4.072727e-03   p_cons 9.982182e-01   p_joint 1.927273e-02

Joint ci ratio: 6.832214e-02	ci left: 2.578700e-02	ci right 2.761930e-02	k: 3203	n:120000
Cons ci ratio: 4.771680e-04	ci left: 9.979791e-01	ci right 9.984630e-01	k: 119788	n:120000
KS ci ratio: 1.749414e-01	ci left: 3.802100e-03	ci right 4.538846e-03	k: 499	n:120000
FAM65A   120000 perm   30 sec   (4013 perm/sec)   p_kst 4.158333e-03   p_cons 9.982333e-01   p_joint 2.669167e-02

Joint ci ratio: 6.673633e-02	ci left: 2.499034e-02	ci right 2.672321e-02	k: 3360	n:130000
Cons ci ratio: 4.577020e-04	ci left: 9.979952e-01	ci right 9.984591e-01	k: 129771	n:130000
KS ci ratio: 1.677160e-01	ci left: 3.833588e-03	ci right 4.542655e-03	k: 543	n:130000
FAM65A   130000 perm   33 sec   (3946 perm/sec)   p_kst 4.176923e-03   p_cons 9.982385e-01   p_joint 2.584615e-02

Joint ci ratio: 6.589127e-02	ci left: 2.384407e-02	ci right 2.547570e-02	k: 3451	n:140000
Cons ci ratio: 4.359469e-04	ci left: 9.980472e-01	ci right 9.984889e-01	k: 139759	n:140000
KS ci ratio: 1.693106e-01	ci left: 3.491292e-03	ci right 4.143810e-03	k: 533	n:140000
FAM65A   140000 perm   36 sec   (3881 perm/sec)   p_kst 3.807143e-03   p_cons 9.982786e-01   p_joint 2.465000e-02

Joint ci ratio: 6.724421e-02	ci left: 2.140786e-02	ci right 2.290402e-02	k: 3322	n:150000
Cons ci ratio: 4.265931e-04	ci left: 9.980075e-01	ci right 9.984395e-01	k: 149735	n:150000
KS ci ratio: 1.621732e-01	ci left: 3.565281e-03	ci right 4.200799e-03	k: 581	n:150000
FAM65A   150000 perm   39 sec   (3822 perm/sec)   p_kst 3.873333e-03   p_cons 9.982333e-01   p_joint 2.214667e-02

Joint ci ratio: 6.250317e-02	ci left: 2.324327e-02	ci right 2.474904e-02	k: 3838	n:160000
Cons ci ratio: 4.139700e-04	ci left: 9.980063e-01	ci right 9.984253e-01	k: 159716	n:160000
KS ci ratio: 1.559926e-01	ci left: 3.624518e-03	ci right 4.243671e-03	k: 628	n:160000
FAM65A   160000 perm   43 sec   (3764 perm/sec)   p_kst 3.925000e-03   p_cons 9.982250e-01   p_joint 2.398750e-02

Joint ci ratio: 6.099754e-02	ci left: 2.299369e-02	ci right 2.444614e-02	k: 4031	n:170000
Cons ci ratio: 3.970590e-04	ci left: 9.980552e-01	ci right 9.984570e-01	k: 169705	n:170000
KS ci ratio: 1.509177e-01	ci left: 3.654545e-03	ci right 4.256683e-03	k: 671	n:170000
FAM65A   170000 perm   46 sec   (3709 perm/sec)   p_kst 3.947059e-03   p_cons 9.982647e-01   p_joint 2.371176e-02

Joint ci ratio: 5.838292e-02	ci left: 2.371951e-02	ci right 2.515142e-02	k: 4397	n:180000
Cons ci ratio: 3.911328e-04	ci left: 9.980107e-01	ci right 9.984063e-01	k: 179679	n:180000
KS ci ratio: 1.458987e-01	ci left: 3.702938e-03	ci right 4.290991e-03	k: 718	n:180000
FAM65A   180000 perm   49 sec   (3653 perm/sec)   p_kst 3.988889e-03   p_cons 9.982167e-01   p_joint 2.442778e-02

Joint ci ratio: 5.753044e-02	ci left: 2.316597e-02	ci right 2.454335e-02	k: 4531	n:190000
Cons ci ratio: 3.852250e-04	ci left: 9.979713e-01	ci right 9.983607e-01	k: 189653	n:190000
KS ci ratio: 1.423793e-01	ci left: 3.690686e-03	ci right 4.261454e-03	k: 754	n:190000
FAM65A   190000 perm   53 sec   (3599 perm/sec)   p_kst 3.968421e-03   p_cons 9.981737e-01   p_joint 2.384737e-02

Joint ci ratio: 5.427390e-02	ci left: 2.472964e-02	ci right 2.611416e-02	k: 5083	n:200000
Cons ci ratio: 3.747949e-04	ci left: 9.979833e-01	ci right 9.983620e-01	k: 199636	n:200000
KS ci ratio: 1.382284e-01	ci left: 3.728084e-03	ci right 4.286443e-03	k: 800	n:200000
FAM65A   200000 perm   56 sec   (3546 perm/sec)   p_kst 4.000000e-03   p_cons 9.981800e-01   p_joint 2.541500e-02

Joint ci ratio: 5.446701e-02	ci left: 2.341539e-02	ci right 2.473113e-02	k: 5054	n:210000
Cons ci ratio: 3.665983e-04	ci left: 9.979793e-01	ci right 9.983496e-01	k: 209616	n:210000
KS ci ratio: 1.353056e-01	ci left: 3.711518e-03	ci right 4.254695e-03	k: 835	n:210000
FAM65A   210000 perm   60 sec   (3494 perm/sec)   p_kst 3.976190e-03   p_cons 9.981714e-01   p_joint 2.406667e-02

Joint ci ratio: 5.415856e-02	ci left: 2.262879e-02	ci right 2.389290e-02	k: 5116	n:220000
Cons ci ratio: 3.584662e-04	ci left: 9.979805e-01	ci right 9.983425e-01	k: 219597	n:220000
KS ci ratio: 1.321803e-01	ci left: 3.718548e-03	ci right 4.249197e-03	k: 875	n:220000
FAM65A   220000 perm   64 sec   (3444 perm/sec)   p_kst 3.977273e-03   p_cons 9.981682e-01   p_joint 2.325455e-02

Joint ci ratio: 5.132495e-02	ci left: 2.409956e-02	ci right 2.537332e-02	k: 5688	n:230000
Cons ci ratio: 3.500196e-04	ci left: 9.979908e-01	ci right 9.983443e-01	k: 229580	n:230000
KS ci ratio: 1.296176e-01	ci left: 3.704061e-03	ci right 4.221606e-03	k: 910	n:230000
FAM65A   230000 perm   68 sec   (3394 perm/sec)   p_kst 3.956522e-03   p_cons 9.981739e-01   p_joint 2.473043e-02

Joint ci ratio: 4.837323e-02	ci left: 2.598869e-02	ci right 2.728111e-02	k: 6391	n:240000
Cons ci ratio: 3.433120e-04	ci left: 9.979873e-01	ci right 9.983339e-01	k: 239560	n:240000
KS ci ratio: 1.271311e-01	ci left: 3.694907e-03	ci right 4.200522e-03	k: 946	n:240000
FAM65A   240000 perm   72 sec   (3347 perm/sec)   p_kst 3.941667e-03   p_cons 9.981667e-01   p_joint 2.662917e-02

Joint ci ratio: 4.660836e-02	ci left: 2.687430e-02	ci right 2.816069e-02	k: 6878	n:250000
Cons ci ratio: 3.369713e-04	ci left: 9.979841e-01	ci right 9.983242e-01	k: 249540	n:250000
KS ci ratio: 1.249739e-01	ci left: 3.674946e-03	ci right 4.168664e-03	k: 979	n:250000
FAM65A   250000 perm   76 sec   (3301 perm/sec)   p_kst 3.916000e-03   p_cons 9.981600e-01   p_joint 2.751200e-02

Joint ci ratio: 4.668603e-02	ci left: 2.578331e-02	ci right 2.701958e-02	k: 6863	n:260000
Cons ci ratio: 3.323417e-04	ci left: 9.979652e-01	ci right 9.983005e-01	k: 259516	n:260000
KS ci ratio: 1.220193e-01	ci left: 3.712519e-03	ci right 4.198642e-03	k: 1027	n:260000
FAM65A   260000 perm   80 sec   (3257 perm/sec)   p_kst 3.950000e-03   p_cons 9.981385e-01   p_joint 2.639615e-02

Joint ci ratio: 4.620090e-02	ci left: 2.537003e-02	ci right 2.657351e-02	k: 7011	n:270000
Cons ci ratio: 3.281814e-04	ci left: 9.979439e-01	ci right 9.982749e-01	k: 269491	n:270000
KS ci ratio: 1.196000e-01	ci left: 3.725874e-03	ci right 4.203389e-03	k: 1069	n:270000
FAM65A   270000 perm   84 sec   (3215 perm/sec)   p_kst 3.959259e-03   p_cons 9.981148e-01   p_joint 2.596667e-02

Joint ci ratio: 4.577951e-02	ci left: 2.493337e-02	ci right 2.610505e-02	k: 7144	n:280000
Cons ci ratio: 3.223017e-04	ci left: 9.979465e-01	ci right 9.982716e-01	k: 279472	n:280000
KS ci ratio: 1.170552e-01	ci left: 3.755700e-03	ci right 4.226087e-03	k: 1116	n:280000
FAM65A   280000 perm   88 sec   (3174 perm/sec)   p_kst 3.985714e-03   p_cons 9.981143e-01   p_joint 2.551429e-02

Joint ci ratio: 4.194396e-02	ci left: 2.862433e-02	ci right 2.985406e-02	k: 8478	n:290000
Cons ci ratio: 3.155669e-04	ci left: 9.979634e-01	ci right 9.982817e-01	k: 289457	n:290000
KS ci ratio: 1.146168e-01	ci left: 3.786918e-03	ci right 4.250666e-03	k: 1164	n:290000
FAM65A   290000 perm   93 sec   (3134 perm/sec)   p_kst 4.013793e-03   p_cons 9.981276e-01   p_joint 2.923448e-02

Joint ci ratio: 3.742311e-02	ci left: 3.462266e-02	ci right 3.594634e-02	k: 10584	n:300000
Cons ci ratio: 3.111569e-04	ci left: 9.979549e-01	ci right 9.982686e-01	k: 299435	n:300000
KS ci ratio: 1.125578e-01	ci left: 3.799950e-03	ci right 4.256380e-03	k: 1207	n:300000
FAM65A   300000 perm   97 sec   (3096 perm/sec)   p_kst 4.023333e-03   p_cons 9.981167e-01   p_joint 3.528000e-02

Joint ci ratio: 3.591189e-02	ci left: 3.634783e-02	ci right 3.768020e-02	k: 11473	n:310000
Cons ci ratio: 3.061322e-04	ci left: 9.979571e-01	ci right 9.982657e-01	k: 309416	n:310000
KS ci ratio: 1.107394e-01	ci left: 3.802800e-03	ci right 4.251711e-03	k: 1247	n:310000
FAM65A   310000 perm   101 sec   (3058 perm/sec)   p_kst 4.022581e-03   p_cons 9.981161e-01   p_joint 3.700968e-02

Joint ci ratio: 3.537443e-02	ci left: 3.630214e-02	ci right 3.761251e-02	k: 11825	n:320000
Cons ci ratio: 3.015930e-04	ci left: 9.979559e-01	ci right 9.982599e-01	k: 319396	n:320000
KS ci ratio: 1.093478e-01	ci left: 3.781208e-03	ci right 4.221599e-03	k: 1279	n:320000
FAM65A   320000 perm   106 sec   (3021 perm/sec)   p_kst 3.996875e-03   p_cons 9.981125e-01   p_joint 3.695313e-02

Joint ci ratio: 3.532072e-02	ci left: 3.534593e-02	ci right 3.661981e-02	k: 11873	n:330000
Cons ci ratio: 2.974872e-04	ci left: 9.979517e-01	ci right 9.982515e-01	k: 329375	n:330000
KS ci ratio: 1.076783e-01	ci left: 3.784548e-03	ci right 4.218173e-03	k: 1319	n:330000
FAM65A   330000 perm   111 sec   (2984 perm/sec)   p_kst 3.996970e-03   p_cons 9.981061e-01   p_joint 3.597879e-02

Joint ci ratio: 3.557202e-02	ci left: 3.387153e-02	ci right 3.510112e-02	k: 11724	n:340000
Cons ci ratio: 2.939958e-04	ci left: 9.979417e-01	ci right 9.982379e-01	k: 339352	n:340000
KS ci ratio: 1.061614e-01	ci left: 3.782014e-03	ci right 4.208862e-03	k: 1357	n:340000
FAM65A   340000 perm   115 sec   (2948 perm/sec)   p_kst 3.991176e-03   p_cons 9.980941e-01   p_joint 3.448235e-02

Joint ci ratio: 3.608508e-02	ci left: 3.202827e-02	ci right 3.320806e-02	k: 11415	n:350000
Cons ci ratio: 2.897464e-04	ci left: 9.979442e-01	ci right 9.982361e-01	k: 349333	n:350000
KS ci ratio: 1.042951e-01	ci left: 3.810274e-03	ci right 4.232288e-03	k: 1406	n:350000
FAM65A   350000 perm   120 sec   (2914 perm/sec)   p_kst 4.017143e-03   p_cons 9.980943e-01   p_joint 3.261429e-02

Joint ci ratio: 3.558847e-02	ci left: 3.202227e-02	ci right 3.318527e-02	k: 11736	n:360000
Cons ci ratio: 2.844234e-04	ci left: 9.979638e-01	ci right 9.982503e-01	k: 359320	n:360000
KS ci ratio: 1.027366e-01	ci left: 3.820786e-03	ci right 4.237259e-03	k: 1449	n:360000
FAM65A   360000 perm   125 sec   (2881 perm/sec)   p_kst 4.025000e-03   p_cons 9.981111e-01   p_joint 3.260000e-02

Joint ci ratio: 3.358825e-02	ci left: 3.490874e-02	ci right 3.610395e-02	k: 13136	n:370000
Cons ci ratio: 2.571079e-04	ci left: 9.982799e-01	ci right 9.985392e-01	k: 369413	n:370000
KS ci ratio: 1.012459e-01	ci left: 3.830775e-03	ci right 4.241918e-03	k: 1492	n:370000
FAM65A   370000 perm   130 sec   (2848 perm/sec)   p_kst 4.032432e-03   p_cons 9.984135e-01   p_joint 3.550270e-02

Joint ci ratio: 3.382651e-02	ci left: 3.355653e-02	ci right 3.471375e-02	k: 12970	n:380000
Cons ci ratio: 2.526711e-04	ci left: 9.982951e-01	ci right 9.985498e-01	k: 379402	n:380000
KS ci ratio: 1.001792e-01	ci left: 3.812052e-03	ci right 4.216621e-03	k: 1524	n:380000
FAM65A   380000 perm   135 sec   (2816 perm/sec)   p_kst 4.010526e-03   p_cons 9.984263e-01   p_joint 3.413158e-02

Joint ci ratio: 3.374909e-02	ci left: 3.287133e-02	ci right 3.400228e-02	k: 13039	n:390000
Cons ci ratio: 2.484411e-04	ci left: 9.983095e-01	ci right 9.985599e-01	k: 389391	n:390000
KS ci ratio: 9.885894e-02	ci left: 3.816819e-03	ci right 4.216246e-03	k: 1565	n:390000
FAM65A   390000 perm   140 sec   (2785 perm/sec)   p_kst 4.012821e-03   p_cons 9.984385e-01   p_joint 3.343333e-02

Outputting figure to mutsig2_images.part000000000062/FAM65A.3_3744_390000_0.0040128_0.99844_0.033433.png
                gene_name: FAM65A
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0038 
       ci_ks_bounds_right: 0.0042 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.034 

Current progress: 67 percent done.
FAM65C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
Cons ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
KS ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
FAM65C   10000 perm   2 sec   (5782 perm/sec)   p_kst 1.686000e-01   p_cons 3.294000e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000062/FAM65C.3_2925_10000_0.1686_0.3294_0.2274.png
                gene_name: FAM65C
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 70 percent done.
FAM73A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
KS ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
FAM73A   10000 perm   2 sec   (6201 perm/sec)   p_kst 3.616000e-01   p_cons 2.236000e-01   p_joint 3.516000e-01

Outputting figure to mutsig2_images.part000000000062/FAM73A.3_1963_10000_0.3616_0.2236_0.3516.png
                gene_name: FAM73A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 72 percent done.
FAM81A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
KS ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
FAM81A   10000 perm   2 sec   (6381 perm/sec)   p_kst 6.676000e-01   p_cons 7.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM81A.3_1139_10000_0.6676_0.7618_1.png
                gene_name: FAM81A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
FAM83D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
Cons ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
FAM83D   10000 perm   2 sec   (6214 perm/sec)   p_kst 3.563000e-01   p_cons 5.406000e-01   p_joint 5.028000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83D.3_1864_10000_0.3563_0.5406_0.5028.png
                gene_name: FAM83D
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 76 percent done.
FAM83F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
FAM83F   10000 perm   2 sec   (6420 perm/sec)   p_kst 1.356000e-01   p_cons 4.900000e-02   p_joint 1.094000e-01

Joint ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
Cons ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
KS ci ratio: 6.849977e-02	ci left: 1.358592e-01	ci right 1.455455e-01	k: 2813	n:20000
FAM83F   20000 perm   4 sec   (5693 perm/sec)   p_kst 1.406500e-01   p_cons 4.910000e-02   p_joint 4.520000e-02

Joint ci ratio: 6.888198e-02	ci left: 9.406726e-02	ci right 1.008109e-01	k: 2922	n:30000
Cons ci ratio: 9.885800e-02	ci left: 4.733292e-02	ci right 5.228806e-02	k: 1493	n:30000
KS ci ratio: 5.589163e-02	ci left: 1.369154e-01	ci right 1.448210e-01	k: 4225	n:30000
FAM83F   30000 perm   6 sec   (5412 perm/sec)   p_kst 1.408333e-01   p_cons 4.976667e-02   p_joint 9.740000e-02

Outputting figure to mutsig2_images.part000000000062/FAM83F.3_1523_30000_0.14083_0.049767_0.0974.png
                gene_name: FAM83F
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 78 percent done.
FAM90A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
FAM90A1   10000 perm   1 sec   (6949 perm/sec)   p_kst 8.196000e-01   p_cons 8.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM90A1.3_1411_10000_0.8196_0.8182_1.png
                gene_name: FAM90A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FANCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
FANCE   10000 perm   2 sec   (6121 perm/sec)   p_kst 8.680000e-02   p_cons 7.376000e-01   p_joint 2.540000e-01

Joint ci ratio: 4.399527e-02	ci left: 2.778565e-01	ci right 2.904063e-01	k: 5682	n:20000
Cons ci ratio: 1.654524e-02	ci left: 7.311414e-01	ci right 7.433895e-01	k: 14746	n:20000
KS ci ratio: 8.987697e-02	ci left: 8.293337e-02	ci right 9.078723e-02	k: 1736	n:20000
FANCE   20000 perm   4 sec   (5443 perm/sec)   p_kst 8.680000e-02   p_cons 7.373000e-01   p_joint 2.841000e-01

Outputting figure to mutsig2_images.part000000000062/FANCE.3_1651_20000_0.0868_0.7373_0.2841.png
                gene_name: FANCE
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 83 percent done.
FANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
FANK1   10000 perm   2 sec   (6646 perm/sec)   p_kst 6.752000e-01   p_cons 3.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FANK1.3_1082_10000_0.6752_0.3808_1.png
                gene_name: FANK1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
FAM63B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
FAM63B   10000 perm   2 sec   (6343 perm/sec)   p_kst 9.758000e-01   p_cons 4.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM63B.2_1902_10000_0.9758_0.4794_1.png
                gene_name: FAM63B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
FAM70B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
FAM70B   10000 perm   1 sec   (6904 perm/sec)   p_kst 1.383000e-01   p_cons 3.225000e-01   p_joint 1.788000e-01

Outputting figure to mutsig2_images.part000000000062/FAM70B.2_1017_10000_0.1383_0.3225_0.1788.png
                gene_name: FAM70B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 89 percent done.
FAM71E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
KS ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
FAM71E1   10000 perm   1 sec   (7387 perm/sec)   p_kst 5.766000e-01   p_cons 9.083000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71E1.2_712_10000_0.5766_0.9083_0.6353.png
                gene_name: FAM71E1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 91 percent done.
FAM72B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
FAM72B   10000 perm   1 sec   (7586 perm/sec)   p_kst 1.335000e-01   p_cons 1.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM72B.2_466_10000_0.1335_0.1977_1.png
                gene_name: FAM72B
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
FAM73B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
KS ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
FAM73B   10000 perm   2 sec   (6429 perm/sec)   p_kst 8.545000e-01   p_cons 1.730000e-02   p_joint 3.194000e-01

Joint ci ratio: 4.011115e-02	ci left: 3.166695e-01	ci right 3.296819e-01	k: 6463	n:20000
Cons ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
KS ci ratio: 1.124947e-02	ci left: 8.536939e-01	ci right 8.634016e-01	k: 17172	n:20000
FAM73B   20000 perm   4 sec   (5694 perm/sec)   p_kst 8.586000e-01   p_cons 2.715000e-02   p_joint 3.231500e-01

Joint ci ratio: 6.160867e-02	ci left: 1.152249e-01	ci right 1.225825e-01	k: 3566	n:30000
Cons ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
KS ci ratio: 9.178624e-03	ci left: 8.547744e-01	ci right 8.626893e-01	k: 25763	n:30000
FAM73B   30000 perm   6 sec   (5404 perm/sec)   p_kst 8.587667e-01   p_cons 2.596667e-02   p_joint 1.188667e-01

Joint ci ratio: 4.896480e-02	ci left: 1.347081e-01	ci right 1.414945e-01	k: 5523	n:40000
Cons ci ratio: 1.206185e-01	ci left: 2.417129e-02	ci right 2.729807e-02	k: 1028	n:40000
KS ci ratio: 7.957559e-03	ci left: 8.550459e-01	ci right 8.619020e-01	k: 34340	n:40000
FAM73B   40000 perm   8 sec   (5217 perm/sec)   p_kst 8.585000e-01   p_cons 2.570000e-02   p_joint 1.380750e-01

Joint ci ratio: 4.823928e-02	ci left: 1.138388e-01	ci right 1.194858e-01	k: 5832	n:50000
Cons ci ratio: 1.065842e-01	ci left: 2.493437e-02	ci right 2.776098e-02	k: 1316	n:50000
KS ci ratio: 7.113305e-03	ci left: 8.555554e-01	ci right 8.616829e-01	k: 42932	n:50000
FAM73B   50000 perm   10 sec   (5069 perm/sec)   p_kst 8.586400e-01   p_cons 2.632000e-02   p_joint 1.166400e-01

Joint ci ratio: 4.856470e-02	ci left: 9.556624e-02	ci right 1.003394e-01	k: 5876	n:60000
Cons ci ratio: 9.718413e-02	ci left: 2.511552e-02	ci right 2.769723e-02	k: 1583	n:60000
KS ci ratio: 6.486988e-03	ci left: 8.560720e-01	ci right 8.616599e-01	k: 51533	n:60000
FAM73B   60000 perm   12 sec   (4937 perm/sec)   p_kst 8.588833e-01   p_cons 2.638333e-02   p_joint 9.793333e-02

Outputting figure to mutsig2_images.part000000000062/FAM73B.2_1842_60000_0.85888_0.026383_0.097933.png
                gene_name: FAM73B
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 96 percent done.
FAM92B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.301187e-02	ci left: 7.350228e-01	ci right 7.522350e-01	k: 7437	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
FAM92B   10000 perm   1 sec   (6961 perm/sec)   p_kst 6.842000e-01   p_cons 7.437000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM92B.2_947_10000_0.6842_0.7437_1.png
                gene_name: FAM92B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
FANCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
Cons ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
KS ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
FANCF   10000 perm   1 sec   (6758 perm/sec)   p_kst 6.140000e-01   p_cons 1.215000e-01   p_joint 1.842000e-01

Joint ci ratio: 5.910097e-02	ci left: 1.749444e-01	ci right 1.856487e-01	k: 3605	n:20000
Cons ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
KS ci ratio: 2.200896e-02	ci left: 6.065097e-01	ci right 6.200574e-01	k: 12266	n:20000
FANCF   20000 perm   3 sec   (5984 perm/sec)   p_kst 6.133000e-01   p_cons 1.203500e-01   p_joint 1.802500e-01

Outputting figure to mutsig2_images.part000000000062/FANCF.2_1129_20000_0.6133_0.12035_0.18025.png
                gene_name: FANCF
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000062
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 62 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 4421944: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000063> was used as the working directory.
Started at Wed Oct 24 17:44:44 2012
Results reported at Wed Oct 24 18:00:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000063.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000063.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 63  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000063.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1137.36 sec.
    Max Memory :      5390 MB
    Max Swap   :      7797 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
63
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 63
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 63: processing genes 5610 - 5700
Calculating significance of each gene.
Using projection method.
5610	FAP	1
5611	FAR1	1
5612	FAR2	7.820225e-01
5613	FARP1	8.832425e-01
5614	FARP2	9.822295e-01
5615	FARS2	9.613832e-01
5616	FARSA	9.265818e-01
5617	FARSB	5.299699e-01
5618	FAS	3.911461e-01
5619	FASLG	2.602698e-01
5620	FASN	9.993932e-01
5621	FASTK	1
5622	FASTKD1	6.955420e-01
5623	FASTKD2	4.312528e-01
5624	FASTKD3	4.430072e-01
5625	FASTKD5	8.581304e-01
5626	FAT1	9.903627e-01
5627	FAT2	1
5628	FAT3	1
5629	FAT4	1
5630	FATE1	4.057597e-01
5631	FAU	1
5632	FBF1	9.476743e-01
5633	FBL	1
5634	FBLIM1	5.055597e-01
5635	FBLN1	8.072756e-01
5636	FBLN2	2.617192e-01
5637	FBLN5	4.057136e-01
5638	FBLN7	8.149036e-01
5639	FBN1	9.743293e-01
5640	FBN2	5.887756e-01
5641	FBN3	9.999945e-01
5642	FBP1	1
5643	FBP2	1
5644	FBRS	4.856724e-01
5645	FBXL12	5.484482e-01
5646	FBXL13	5.004318e-01
5647	FBXL14	8.294848e-01
5648	FBXL15	1
5649	FBXL16	1
5650	FBXL17	3.530030e-01
5651	FBXL18	9.807912e-01
5652	FBXL19	4.563137e-01
5653	FBXL2	9.539237e-01
5654	FBXL20	8.743680e-01
5655	FBXL21	1.204381e-01
5656	FBXL22	1
5657	FBXL3	4.443773e-01
5658	FBXL4	7.523563e-01
5659	FBXL5	8.274850e-01
5660	FBXL6	1
5661	FBXL7	4.617053e-01
5662	FBXL8	1
5663	FBXO10	9.286640e-01
5664	FBXO11	9.345798e-01
5665	FBXO15	1
5666	FBXO16	5.623724e-01
5667	FBXO17	5.621888e-01
5668	FBXO18	8.246254e-01
5669	FBXO2	2.073925e-01
5670	FBXO21	9.494727e-01
5671	FBXO22	7.220743e-01
5672	FBXO24	3.004020e-01
5673	FBXO25	4.570341e-01
5674	FBXO27	5.085425e-01
5675	FBXO28	1
5676	FBXO3	9.369777e-01
5677	FBXO30	7.833556e-01
5678	FBXO31	8.951721e-01
5679	FBXO32	1
5680	FBXO33	6.092403e-01
5681	FBXO34	8.140322e-01
5682	FBXO36	7.272832e-01
5683	FBXO38	9.833964e-01
5684	FBXO39	1
5685	FBXO4	1.985189e-01
5686	FBXO40	9.341284e-01
5687	FBXO41	1
5688	FBXO42	9.701216e-01
5689	FBXO43	6.816682e-01
5690	FBXO44	1
5691	FBXO45	1
5692	FBXO46	9.492447e-01
5693	FBXO47	1
5694	FBXO48	6.091652e-01
5695	FBXO5	6.904650e-01
5696	FBXO6	1
5697	FBXO7	1
5698	FBXO8	8.324585e-01
5699	FBXO9	1
5700	FBXW10	7.264976e-01
Done

Running MutSig 2:
Scatter job 63: processing genes 5610 - 5700
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAT3
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
Cons ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
FAT3   10000 perm   7 sec   (1440 perm/sec)   p_kst 3.676000e-01   p_cons 4.407000e-01   p_joint 4.469000e-01

Outputting figure to mutsig2_images.part000000000063/FAT3.68_13774_10000_0.3676_0.4407_0.4469.png
                gene_name: FAT3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 2 percent done.
FAT4
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
FAT4   10000 perm   6 sec   (1555 perm/sec)   p_kst 2.114000e-01   p_cons 2.373000e-01   p_joint 2.454000e-01

Outputting figure to mutsig2_images.part000000000063/FAT4.56_15014_10000_0.2114_0.2373_0.2454.png
                gene_name: FAT4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 4 percent done.
FAT1
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
Cons ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
KS ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
FAT1   10000 perm   6 sec   (1634 perm/sec)   p_kst 7.158000e-01   p_cons 2.620000e-02   p_joint 1.114000e-01

Joint ci ratio: 6.645210e-02	ci left: 1.432530e-01	ci right 1.531495e-01	k: 2963	n:20000
Cons ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
KS ci ratio: 1.759634e-02	ci left: 7.064235e-01	ci right 7.190146e-01	k: 14255	n:20000
FAT1   20000 perm   13 sec   (1554 perm/sec)   p_kst 7.127500e-01   p_cons 2.840000e-02   p_joint 1.481500e-01

Joint ci ratio: 6.693283e-02	ci left: 9.915546e-02	ci right 1.060550e-01	k: 3077	n:30000
Cons ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
KS ci ratio: 1.463743e-02	ci left: 6.998701e-01	ci right 7.102235e-01	k: 21152	n:30000
FAT1   30000 perm   20 sec   (1520 perm/sec)   p_kst 7.050667e-01   p_cons 2.936667e-02   p_joint 1.025667e-01

Joint ci ratio: 4.988545e-02	ci left: 1.303790e-01	ci right 1.370743e-01	k: 5348	n:40000
Cons ci ratio: 1.137667e-01	ci left: 2.718282e-02	ci right 3.048606e-02	k: 1152	n:40000
KS ci ratio: 1.210901e-02	ci left: 7.193395e-01	ci right 7.281280e-01	k: 28950	n:40000
FAT1   40000 perm   27 sec   (1508 perm/sec)   p_kst 7.237500e-01   p_cons 2.880000e-02   p_joint 1.337000e-01

Joint ci ratio: 4.382867e-02	ci left: 1.348889e-01	ci right 1.409532e-01	k: 6895	n:50000
Cons ci ratio: 1.033263e-01	ci left: 2.653244e-02	ci right 2.944271e-02	k: 1398	n:50000
KS ci ratio: 1.083580e-02	ci left: 7.196170e-01	ci right 7.274771e-01	k: 36178	n:50000
FAT1   50000 perm   33 sec   (1494 perm/sec)   p_kst 7.235600e-01   p_cons 2.796000e-02   p_joint 1.379000e-01

Joint ci ratio: 3.985979e-02	ci left: 1.360428e-01	ci right 1.415922e-01	k: 8328	n:60000
Cons ci ratio: 9.498936e-02	ci left: 2.628743e-02	ci right 2.892519e-02	k: 1655	n:60000
KS ci ratio: 9.888236e-03	ci left: 7.201029e-01	ci right 7.272755e-01	k: 43422	n:60000
FAT1   60000 perm   40 sec   (1484 perm/sec)   p_kst 7.237000e-01   p_cons 2.758333e-02   p_joint 1.388000e-01

Outputting figure to mutsig2_images.part000000000063/FAT1.51_13871_60000_0.7237_0.027583_0.1388.png
                gene_name: FAT1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 5 percent done.
FBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
Cons ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
KS ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
FBN2   10000 perm   5 sec   (2021 perm/sec)   p_kst 1.284000e-01   p_cons 4.578000e-01   p_joint 2.008000e-01

Joint ci ratio: 4.978926e-02	ci left: 2.306740e-01	ci right 2.425026e-01	k: 4731	n:20000
Cons ci ratio: 3.023006e-02	ci left: 4.497782e-01	ci right 4.636344e-01	k: 9134	n:20000
KS ci ratio: 7.047964e-02	ci left: 1.292088e-01	ci right 1.386979e-01	k: 2678	n:20000
FBN2   20000 perm   10 sec   (1911 perm/sec)   p_kst 1.339000e-01   p_cons 4.567000e-01   p_joint 2.365500e-01

Outputting figure to mutsig2_images.part000000000063/FBN2.48_8999_20000_0.1339_0.4567_0.23655.png
                gene_name: FBN2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 7 percent done.
FBXL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
Cons ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
FBXL7   10000 perm   2 sec   (4273 perm/sec)   p_kst 5.120000e-02   p_cons 7.243000e-01   p_joint 1.090000e-01

Joint ci ratio: 7.162618e-02	ci left: 1.255651e-01	ci right 1.349427e-01	k: 2604	n:20000
Cons ci ratio: 1.742889e-02	ci left: 7.103486e-01	ci right 7.228884e-01	k: 14333	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
FBXL7   20000 perm   5 sec   (3933 perm/sec)   p_kst 5.050000e-02   p_cons 7.166500e-01   p_joint 1.302000e-01

Joint ci ratio: 7.020695e-02	ci left: 9.081888e-02	ci right 9.745996e-02	k: 2823	n:30000
Cons ci ratio: 1.339182e-02	ci left: 7.356675e-01	ci right 7.456192e-01	k: 22220	n:30000
KS ci ratio: 9.864970e-02	ci left: 4.752822e-02	ci right 5.249272e-02	k: 1499	n:30000
FBXL7   30000 perm   8 sec   (3795 perm/sec)   p_kst 4.996667e-02   p_cons 7.406667e-01   p_joint 9.410000e-02

Outputting figure to mutsig2_images.part000000000063/FBXL7.24_1492_30000_0.049967_0.74067_0.0941.png
                gene_name: FBXL7
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 9 percent done.
FBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
FBN1   10000 perm   4 sec   (2643 perm/sec)   p_kst 6.188000e-01   p_cons 4.477000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000063/FBN1.21_8876_10000_0.6188_0.4477_0.7053.png
                gene_name: FBN1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 11 percent done.
FAT2
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
FAT2   10000 perm   5 sec   (2109 perm/sec)   p_kst 8.021000e-01   p_cons 2.000000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000063/FAT2.20_13142_10000_0.8021_0.2_0.5652.png
                gene_name: FAT2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 13 percent done.
FBN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
Cons ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
KS ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
FBN3   10000 perm   4 sec   (2790 perm/sec)   p_kst 8.893000e-01   p_cons 3.715000e-01   p_joint 8.405000e-01

Outputting figure to mutsig2_images.part000000000063/FBN3.14_8682_10000_0.8893_0.3715_0.8405.png
                gene_name: FBN3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 15 percent done.
FAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
KS ci ratio: 2.415377e-02	ci left: 7.159319e-01	ci right 7.335370e-01	k: 7248	n:10000
FAP   10000 perm   2 sec   (4997 perm/sec)   p_kst 7.248000e-01   p_cons 7.527000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FAP.8_2387_10000_0.7248_0.7527_1.png
                gene_name: FAP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
FBXO38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
Cons ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
KS ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
FBXO38   10000 perm   2 sec   (4063 perm/sec)   p_kst 2.266000e-01   p_cons 1.766000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO38.8_3651_10000_0.2266_0.1766_0.225.png
                gene_name: FBXO38
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
FBLN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
FBLN2   10000 perm   2 sec   (4729 perm/sec)   p_kst 7.146000e-01   p_cons 1.519000e-01   p_joint 4.042000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN2.6_2454_10000_0.7146_0.1519_0.4042.png
                gene_name: FBLN2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
FARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
KS ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
FARP1   10000 perm   2 sec   (4281 perm/sec)   p_kst 2.646000e-01   p_cons 2.630000e-02   p_joint 8.460000e-02

Joint ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
Cons ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
KS ci ratio: 4.580958e-02	ci left: 2.618210e-01	ci right 2.741465e-01	k: 5359	n:20000
FARP1   20000 perm   5 sec   (3903 perm/sec)   p_kst 2.679500e-01   p_cons 2.635000e-02   p_joint 5.800000e-02

Joint ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
Cons ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
KS ci ratio: 3.744480e-02	ci left: 2.625301e-01	ci right 2.725816e-01	k: 8026	n:30000
FARP1   30000 perm   8 sec   (3771 perm/sec)   p_kst 2.675333e-01   p_cons 2.720000e-02   p_joint 4.140000e-02

Joint ci ratio: 8.969304e-02	ci left: 4.352722e-02	ci right 4.763907e-02	k: 1822	n:40000
Cons ci ratio: 1.172691e-01	ci left: 2.557923e-02	ci right 2.878991e-02	k: 1086	n:40000
KS ci ratio: 3.247721e-02	ci left: 2.626194e-01	ci right 2.713144e-01	k: 10678	n:40000
FARP1   40000 perm   11 sec   (3686 perm/sec)   p_kst 2.669500e-01   p_cons 2.715000e-02   p_joint 4.555000e-02

Joint ci ratio: 8.911076e-02	ci left: 3.559722e-02	ci right 3.893678e-02	k: 1862	n:50000
Cons ci ratio: 1.084595e-01	ci left: 2.407746e-02	ci right 2.685801e-02	k: 1272	n:50000
KS ci ratio: 2.925138e-02	ci left: 2.603789e-01	ci right 2.681284e-01	k: 13212	n:50000
FARP1   50000 perm   14 sec   (3605 perm/sec)   p_kst 2.642400e-01   p_cons 2.544000e-02   p_joint 3.724000e-02

Joint ci ratio: 8.015509e-02	ci left: 3.679473e-02	ci right 3.988346e-02	k: 2299	n:60000
Cons ci ratio: 9.876448e-02	ci left: 2.431837e-02	ci right 2.686113e-02	k: 1534	n:60000
KS ci ratio: 2.671717e-02	ci left: 2.605093e-01	ci right 2.675802e-01	k: 15842	n:60000
FARP1   60000 perm   17 sec   (3530 perm/sec)   p_kst 2.640333e-01   p_cons 2.556667e-02   p_joint 3.831667e-02

Outputting figure to mutsig2_images.part000000000063/FARP1.6_3465_60000_0.26403_0.025567_0.038317.png
                gene_name: FARP1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 22 percent done.
FBLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
FBLN1   10000 perm   2 sec   (4614 perm/sec)   p_kst 2.199000e-01   p_cons 7.376000e-01   p_joint 3.609000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN1.6_2660_10000_0.2199_0.7376_0.3609.png
                gene_name: FBLN1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 24 percent done.
FBXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
Cons ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
KS ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
FBXO4   10000 perm   2 sec   (6202 perm/sec)   p_kst 5.466000e-01   p_cons 6.393000e-01   p_joint 7.271000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO4.6_1218_10000_0.5466_0.6393_0.7271.png
                gene_name: FBXO4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 25 percent done.
FBXO43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.300512e-02	ci left: 8.948764e-01	ci right 9.066889e-01	k: 9009	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
FBXO43   10000 perm   2 sec   (5354 perm/sec)   p_kst 8.052000e-01   p_cons 3.888000e-01   p_joint 9.009000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO43.6_2147_10000_0.8052_0.3888_0.9009.png
                gene_name: FBXO43
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 27 percent done.
FBXW10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
Cons ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
KS ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
FBXW10   10000 perm   2 sec   (4629 perm/sec)   p_kst 7.880000e-02   p_cons 1.125000e-01   p_joint 1.001000e-01

Joint ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
Cons ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
KS ci ratio: 9.216170e-02	ci left: 7.911446e-02	ci right 8.680729e-02	k: 1658	n:20000
FBXW10   20000 perm   5 sec   (4170 perm/sec)   p_kst 8.290000e-02   p_cons 1.060500e-01   p_joint 6.930000e-02

Joint ci ratio: 7.896925e-02	ci left: 7.289491e-02	ci right 7.892086e-02	k: 2276	n:30000
Cons ci ratio: 6.539274e-02	ci left: 1.034579e-01	ci right 1.104851e-01	k: 3208	n:30000
KS ci ratio: 7.584167e-02	ci left: 7.865721e-02	ci right 8.489074e-02	k: 2452	n:30000
FBXW10   30000 perm   8 sec   (3987 perm/sec)   p_kst 8.173333e-02   p_cons 1.069333e-01   p_joint 7.586667e-02

Outputting figure to mutsig2_images.part000000000063/FBXW10.6_3212_30000_0.081733_0.10693_0.075867.png
                gene_name: FBXW10
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 29 percent done.
FASTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
Cons ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
FASTKD1   10000 perm   2 sec   (5139 perm/sec)   p_kst 5.025000e-01   p_cons 5.400000e-03   p_joint 5.280000e-02

Joint ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
Cons ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
KS ci ratio: 2.740509e-02	ci left: 4.986955e-01	ci right 5.126028e-01	k: 10113	n:20000
FASTKD1   20000 perm   4 sec   (4575 perm/sec)   p_kst 5.056500e-01   p_cons 5.250000e-03   p_joint 1.900000e-02

Joint ci ratio: 1.350911e-01	ci left: 2.545300e-02	ci right 2.917264e-02	k: 818	n:30000
Cons ci ratio: 3.090706e-01	ci left: 4.509917e-03	ci right 6.188071e-03	k: 159	n:30000
KS ci ratio: 2.229704e-02	ci left: 5.017589e-01	ci right 5.131064e-01	k: 15223	n:30000
FASTKD1   30000 perm   7 sec   (4373 perm/sec)   p_kst 5.074333e-01   p_cons 5.300000e-03   p_joint 2.726667e-02

Joint ci ratio: 1.326191e-01	ci left: 1.995578e-02	ci right 2.281429e-02	k: 854	n:40000
Cons ci ratio: 2.647682e-01	ci left: 4.728754e-03	ci right 6.194449e-03	k: 217	n:40000
KS ci ratio: 1.932388e-02	ci left: 5.021627e-01	ci right 5.119863e-01	k: 20283	n:40000
FASTKD1   40000 perm   9 sec   (4244 perm/sec)   p_kst 5.070750e-01   p_cons 5.425000e-03   p_joint 2.135000e-02

Joint ci ratio: 1.264421e-01	ci left: 1.766628e-02	ci right 2.007004e-02	k: 942	n:50000
Cons ci ratio: 2.357316e-01	ci left: 4.851763e-03	ci right 6.166651e-03	k: 274	n:50000
KS ci ratio: 1.728238e-02	ci left: 5.027275e-01	ci right 5.115116e-01	k: 25356	n:50000
FASTKD1   50000 perm   12 sec   (4140 perm/sec)   p_kst 5.071200e-01   p_cons 5.480000e-03   p_joint 1.884000e-02

Joint ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
Cons ci ratio: 2.168510e-01	ci left: 4.829295e-03	ci right 6.019314e-03	k: 324	n:60000
KS ci ratio: 1.573579e-02	ci left: 5.044078e-01	ci right 5.124247e-01	k: 30505	n:60000
FASTKD1   60000 perm   15 sec   (4048 perm/sec)   p_kst 5.084167e-01   p_cons 5.400000e-03   p_joint 2.238333e-02

Joint ci ratio: 1.011968e-01	ci left: 1.992270e-02	ci right 2.206012e-02	k: 1468	n:70000
Cons ci ratio: 1.992301e-01	ci left: 4.951983e-03	ci right 6.061041e-03	k: 384	n:70000
KS ci ratio: 1.457654e-02	ci left: 5.044319e-01	ci right 5.118531e-01	k: 35570	n:70000
FASTKD1   70000 perm   18 sec   (3966 perm/sec)   p_kst 5.081429e-01   p_cons 5.485714e-03   p_joint 2.097143e-02

Joint ci ratio: 1.114624e-01	ci left: 1.437571e-02	ci right 1.608471e-02	k: 1217	n:80000
Cons ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
KS ci ratio: 1.363188e-02	ci left: 5.047917e-01	ci right 5.117327e-01	k: 40661	n:80000
FASTKD1   80000 perm   21 sec   (3890 perm/sec)   p_kst 5.082625e-01   p_cons 5.700000e-03   p_joint 1.521250e-02

Joint ci ratio: 1.065278e-01	ci left: 1.403203e-02	ci right 1.562168e-02	k: 1333	n:90000
Cons ci ratio: 1.674043e-01	ci left: 5.548468e-03	ci right 6.572650e-03	k: 544	n:90000
KS ci ratio: 1.284218e-02	ci left: 5.053836e-01	ci right 5.119269e-01	k: 45779	n:90000
FASTKD1   90000 perm   24 sec   (3817 perm/sec)   p_kst 5.086556e-01   p_cons 6.044444e-03   p_joint 1.481111e-02

Joint ci ratio: 8.637669e-02	ci left: 1.930762e-02	ci right 2.106037e-02	k: 2017	n:100000
Cons ci ratio: 1.645948e-01	ci left: 5.175644e-03	ci right 6.113379e-03	k: 563	n:100000
KS ci ratio: 1.217479e-02	ci left: 5.058963e-01	ci right 5.121032e-01	k: 50900	n:100000
FASTKD1   100000 perm   27 sec   (3748 perm/sec)   p_kst 5.090000e-01   p_cons 5.630000e-03   p_joint 2.017000e-02

Joint ci ratio: 7.976948e-02	ci left: 2.062421e-02	ci right 2.234660e-02	k: 2362	n:110000
Cons ci ratio: 1.576265e-01	ci left: 5.150074e-03	ci right 6.039934e-03	k: 614	n:110000
KS ci ratio: 1.156060e-02	ci left: 5.080957e-01	ci right 5.140128e-01	k: 56216	n:110000
FASTKD1   110000 perm   30 sec   (3679 perm/sec)   p_kst 5.110545e-01   p_cons 5.581818e-03   p_joint 2.147273e-02

Joint ci ratio: 8.383937e-02	ci left: 1.714100e-02	ci right 1.864909e-02	k: 2146	n:120000
Cons ci ratio: 1.494565e-01	ci left: 5.273846e-03	ci right 6.133640e-03	k: 683	n:120000
KS ci ratio: 1.106707e-02	ci left: 5.082840e-01	ci right 5.139488e-01	k: 61334	n:120000
FASTKD1   120000 perm   33 sec   (3617 perm/sec)   p_kst 5.111167e-01   p_cons 5.691667e-03   p_joint 1.788333e-02

Joint ci ratio: 8.220154e-02	ci left: 1.648510e-02	ci right 1.790578e-02	k: 2234	n:130000
Cons ci ratio: 1.433988e-01	ci left: 5.305394e-03	ci right 6.132273e-03	k: 742	n:130000
KS ci ratio: 1.062705e-02	ci left: 5.086710e-01	ci right 5.141131e-01	k: 66481	n:130000
FASTKD1   130000 perm   37 sec   (3561 perm/sec)   p_kst 5.113923e-01   p_cons 5.707692e-03   p_joint 1.718462e-02

Joint ci ratio: 7.523653e-02	ci left: 1.830528e-02	ci right 1.974331e-02	k: 2662	n:140000
Cons ci ratio: 1.382828e-01	ci left: 5.312346e-03	ci right 6.108336e-03	k: 798	n:140000
KS ci ratio: 1.024531e-02	ci left: 5.085349e-01	ci right 5.137789e-01	k: 71562	n:140000
FASTKD1   140000 perm   40 sec   (3507 perm/sec)   p_kst 5.111571e-01   p_cons 5.700000e-03   p_joint 1.901429e-02

Joint ci ratio: 7.563288e-02	ci left: 1.692749e-02	ci right 1.826459e-02	k: 2638	n:150000
Cons ci ratio: 1.327444e-01	ci left: 5.396173e-03	ci right 6.169785e-03	k: 866	n:150000
KS ci ratio: 9.906046e-03	ci left: 5.082134e-01	ci right 5.132795e-01	k: 76612	n:150000
FASTKD1   150000 perm   43 sec   (3457 perm/sec)   p_kst 5.107467e-01   p_cons 5.773333e-03   p_joint 1.758667e-02

Joint ci ratio: 6.512335e-02	ci left: 2.142212e-02	ci right 2.287027e-02	k: 3542	n:160000
Cons ci ratio: 1.287957e-01	ci left: 5.385370e-03	ci right 6.132711e-03	k: 920	n:160000
KS ci ratio: 9.587712e-03	ci left: 5.084911e-01	ci right 5.133960e-01	k: 81751	n:160000
FASTKD1   160000 perm   47 sec   (3404 perm/sec)   p_kst 5.109438e-01   p_cons 5.750000e-03   p_joint 2.213750e-02

Joint ci ratio: 6.408517e-02	ci left: 2.084470e-02	ci right 2.223051e-02	k: 3660	n:170000
Cons ci ratio: 1.250507e-01	ci left: 5.387537e-03	ci right 6.111828e-03	k: 976	n:170000
KS ci ratio: 9.302157e-03	ci left: 5.085265e-01	ci right 5.132849e-01	k: 86854	n:170000
FASTKD1   170000 perm   51 sec   (3353 perm/sec)   p_kst 5.109059e-01   p_cons 5.741176e-03   p_joint 2.152941e-02

Joint ci ratio: 6.458506e-02	ci left: 1.940741e-02	ci right 2.070811e-02	k: 3609	n:180000
Cons ci ratio: 1.213782e-01	ci left: 5.411293e-03	ci right 6.115879e-03	k: 1036	n:180000
KS ci ratio: 9.043398e-03	ci left: 5.084100e-01	ci right 5.130341e-01	k: 91930	n:180000
FASTKD1   180000 perm   55 sec   (3303 perm/sec)   p_kst 5.107222e-01   p_cons 5.755556e-03   p_joint 2.005000e-02

Joint ci ratio: 6.489525e-02	ci left: 1.823027e-02	ci right 1.945816e-02	k: 3579	n:190000
Cons ci ratio: 1.177419e-01	ci left: 5.458371e-03	ci right 6.146313e-03	k: 1101	n:190000
KS ci ratio: 8.805096e-03	ci left: 5.083074e-01	ci right 5.128081e-01	k: 97006	n:190000
FASTKD1   190000 perm   58 sec   (3253 perm/sec)   p_kst 5.105579e-01   p_cons 5.794737e-03   p_joint 1.883684e-02

Joint ci ratio: 6.676335e-02	ci left: 1.637895e-02	ci right 1.751512e-02	k: 3388	n:200000
Cons ci ratio: 1.147606e-01	ci left: 5.467021e-03	ci right 6.137424e-03	k: 1159	n:200000
KS ci ratio: 8.582371e-03	ci left: 5.083515e-01	ci right 5.127382e-01	k: 102109	n:200000
FASTKD1   200000 perm   62 sec   (3207 perm/sec)   p_kst 5.105450e-01   p_cons 5.795000e-03   p_joint 1.694000e-02

Joint ci ratio: 6.647249e-02	ci left: 1.574867e-02	ci right 1.683617e-02	k: 3420	n:210000
Cons ci ratio: 1.119949e-01	ci left: 5.475046e-03	ci right 6.129184e-03	k: 1217	n:210000
KS ci ratio: 8.372065e-03	ci left: 5.086119e-01	ci right 5.128926e-01	k: 107258	n:210000
FASTKD1   210000 perm   66 sec   (3164 perm/sec)   p_kst 5.107524e-01   p_cons 5.795238e-03   p_joint 1.628571e-02

Joint ci ratio: 6.614487e-02	ci left: 1.519360e-02	ci right 1.623740e-02	k: 3456	n:220000
Cons ci ratio: 1.096797e-01	ci left: 5.455989e-03	ci right 6.093503e-03	k: 1269	n:220000
KS ci ratio: 8.178354e-03	ci left: 5.087360e-01	ci right 5.129182e-01	k: 112382	n:220000
FASTKD1   220000 perm   70 sec   (3122 perm/sec)   p_kst 5.108273e-01   p_cons 5.768182e-03   p_joint 1.570909e-02

Joint ci ratio: 5.775667e-02	ci left: 1.906737e-02	ci right 2.020565e-02	k: 4515	n:230000
Cons ci ratio: 1.075842e-01	ci left: 5.430252e-03	ci right 6.051868e-03	k: 1319	n:230000
KS ci ratio: 8.001742e-03	ci left: 5.085852e-01	ci right 5.126754e-01	k: 117445	n:230000
FASTKD1   230000 perm   75 sec   (3080 perm/sec)   p_kst 5.106304e-01   p_cons 5.734783e-03   p_joint 1.963043e-02

Joint ci ratio: 5.944582e-02	ci left: 1.726654e-02	ci right 1.832849e-02	k: 4270	n:240000
Cons ci ratio: 1.051040e-01	ci left: 5.459514e-03	ci right 6.069182e-03	k: 1382	n:240000
KS ci ratio: 7.834463e-03	ci left: 5.085520e-01	ci right 5.125560e-01	k: 122533	n:240000
FASTKD1   240000 perm   79 sec   (3040 perm/sec)   p_kst 5.105542e-01   p_cons 5.758333e-03   p_joint 1.779167e-02

Joint ci ratio: 5.043254e-02	ci left: 2.300058e-02	ci right 2.419450e-02	k: 5898	n:250000
Cons ci ratio: 1.067586e-01	ci left: 5.077531e-03	ci right 5.654028e-03	k: 1340	n:250000
KS ci ratio: 7.671787e-03	ci left: 5.088784e-01	ci right 5.128014e-01	k: 127710	n:250000
FASTKD1   250000 perm   83 sec   (2999 perm/sec)   p_kst 5.108400e-01   p_cons 5.360000e-03   p_joint 2.359200e-02

Joint ci ratio: 5.014804e-02	ci left: 2.238541e-02	ci right 2.354064e-02	k: 5969	n:260000
Cons ci ratio: 1.051274e-01	ci left: 5.039494e-03	ci right 5.602389e-03	k: 1382	n:260000
KS ci ratio: 7.520921e-03	ci left: 5.090419e-01	ci right 5.128886e-01	k: 132851	n:260000
FASTKD1   260000 perm   88 sec   (2962 perm/sec)   p_kst 5.109654e-01   p_cons 5.315385e-03   p_joint 2.295769e-02

Joint ci ratio: 5.029059e-02	ci left: 2.145366e-02	ci right 2.256404e-02	k: 5941	n:270000
Cons ci ratio: 1.036419e-01	ci left: 4.997121e-03	ci right 5.546914e-03	k: 1422	n:270000
KS ci ratio: 7.381407e-03	ci left: 5.090051e-01	ci right 5.127798e-01	k: 137941	n:270000
FASTKD1   270000 perm   92 sec   (2920 perm/sec)   p_kst 5.108926e-01   p_cons 5.266667e-03   p_joint 2.200370e-02

Joint ci ratio: 4.953284e-02	ci left: 2.133637e-02	ci right 2.242356e-02	k: 6125	n:280000
Cons ci ratio: 1.018334e-01	ci left: 4.996115e-03	ci right 5.535632e-03	k: 1473	n:280000
KS ci ratio: 7.246479e-03	ci left: 5.091716e-01	ci right 5.128782e-01	k: 143087	n:280000
FASTKD1   280000 perm   97 sec   (2886 perm/sec)   p_kst 5.110250e-01   p_cons 5.260714e-03   p_joint 2.187500e-02

Joint ci ratio: 4.798678e-02	ci left: 2.195307e-02	ci right 2.303581e-02	k: 6522	n:290000
Cons ci ratio: 9.982078e-02	ci left: 5.025518e-03	ci right 5.556856e-03	k: 1533	n:290000
KS ci ratio: 7.123013e-03	ci left: 5.090236e-01	ci right 5.126658e-01	k: 148145	n:290000
FASTKD1   290000 perm   102 sec   (2849 perm/sec)   p_kst 5.108448e-01   p_cons 5.286207e-03   p_joint 2.248966e-02

Outputting figure to mutsig2_images.part000000000063/FASTKD1.5_2600_290000_0.51084_0.0052862_0.02249.png
                gene_name: FASTKD1
               theta_stop: 0.100 
                    nperm: 290000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.0053 
      ci_cons_bounds_left: 0.0050 
     ci_cons_bounds_right: 0.0056 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 31 percent done.
FASTKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
Cons ci ratio: 3.963549e-02	ci left: 4.845536e-01	ci right 5.042496e-01	k: 4944	n:10000
KS ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
FASTKD2   10000 perm   2 sec   (5413 perm/sec)   p_kst 5.850000e-01   p_cons 4.944000e-01   p_joint 6.650000e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD2.5_2177_10000_0.585_0.4944_0.665.png
                gene_name: FASTKD2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 33 percent done.
FASTKD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
KS ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
FASTKD5   10000 perm   2 sec   (5393 perm/sec)   p_kst 6.010000e-02   p_cons 6.280000e-02   p_joint 9.370000e-02

Joint ci ratio: 1.416066e-01	ci left: 3.428157e-02	ci right 3.955417e-02	k: 737	n:20000
Cons ci ratio: 1.038922e-01	ci left: 6.298759e-02	ci right 6.993910e-02	k: 1328	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
FASTKD5   20000 perm   4 sec   (4758 perm/sec)   p_kst 5.950000e-02   p_cons 6.640000e-02   p_joint 3.685000e-02

Joint ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
Cons ci ratio: 8.550795e-02	ci left: 6.266056e-02	ci right 6.829061e-02	k: 1963	n:30000
KS ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
FASTKD5   30000 perm   7 sec   (4532 perm/sec)   p_kst 6.026667e-02   p_cons 6.543333e-02   p_joint 5.506667e-02

Outputting figure to mutsig2_images.part000000000063/FASTKD5.5_2299_30000_0.060267_0.065433_0.055067.png
                gene_name: FASTKD5
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 35 percent done.
FBXO18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
FBXO18   10000 perm   2 sec   (4653 perm/sec)   p_kst 9.000000e-02   p_cons 1.355000e-01   p_joint 1.304000e-01

Joint ci ratio: 9.848272e-02	ci left: 6.977402e-02	ci right 7.705059e-02	k: 1467	n:20000
Cons ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
KS ci ratio: 8.843498e-02	ci left: 8.548063e-02	ci right 9.343920e-02	k: 1788	n:20000
FBXO18   20000 perm   5 sec   (4185 perm/sec)   p_kst 8.940000e-02   p_cons 1.290500e-01   p_joint 7.335000e-02

Outputting figure to mutsig2_images.part000000000063/FBXO18.5_3378_20000_0.0894_0.12905_0.07335.png
                gene_name: FBXO18
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 36 percent done.
FBXO24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
KS ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
FBXO24   10000 perm   2 sec   (5190 perm/sec)   p_kst 2.270000e-02   p_cons 8.560000e-01   p_joint 4.350000e-02

Joint ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
Cons ci ratio: 1.124483e-02	ci left: 8.537953e-01	ci right 8.635001e-01	k: 17174	n:20000
KS ci ratio: 1.850223e-01	ci left: 1.991636e-02	ci right 2.402425e-02	k: 438	n:20000
FBXO24   20000 perm   4 sec   (4651 perm/sec)   p_kst 2.190000e-02   p_cons 8.587000e-01   p_joint 5.310000e-02

Joint ci ratio: 9.666480e-02	ci left: 4.944925e-02	ci right 5.450463e-02	k: 1558	n:30000
Cons ci ratio: 9.162224e-03	ci left: 8.552127e-01	ci right 8.631176e-01	k: 25776	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
FBXO24   30000 perm   7 sec   (4434 perm/sec)   p_kst 2.303333e-02   p_cons 8.592000e-01   p_joint 5.193333e-02

Joint ci ratio: 8.798714e-02	ci left: 4.519117e-02	ci right 4.937487e-02	k: 1890	n:40000
Cons ci ratio: 7.955922e-03	ci left: 8.550964e-01	ci right 8.619515e-01	k: 34342	n:40000
KS ci ratio: 1.293339e-01	ci left: 2.099627e-02	ci right 2.392362e-02	k: 897	n:40000
FBXO24   40000 perm   9 sec   (4291 perm/sec)   p_kst 2.242500e-02   p_cons 8.585500e-01   p_joint 4.725000e-02

Joint ci ratio: 8.495711e-02	ci left: 3.910230e-02	ci right 4.259126e-02	k: 2041	n:50000
Cons ci ratio: 7.123849e-03	ci left: 8.551922e-01	ci right 8.613261e-01	k: 42914	n:50000
KS ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
FBXO24   50000 perm   12 sec   (4177 perm/sec)   p_kst 2.264000e-02   p_cons 8.582800e-01   p_joint 4.082000e-02

Joint ci ratio: 7.777698e-02	ci left: 3.903473e-02	ci right 4.220990e-02	k: 2436	n:60000
Cons ci ratio: 6.804847e-03	ci left: 8.439769e-01	ci right 8.497562e-01	k: 50813	n:60000
KS ci ratio: 1.048864e-01	ci left: 2.155548e-02	ci right 2.395765e-02	k: 1364	n:60000
FBXO24   60000 perm   15 sec   (4088 perm/sec)   p_kst 2.273333e-02   p_cons 8.468833e-01   p_joint 4.060000e-02

Joint ci ratio: 6.835656e-02	ci left: 4.333552e-02	ci right 4.641664e-02	k: 3140	n:70000
Cons ci ratio: 6.299989e-03	ci left: 8.441966e-01	ci right 8.495460e-01	k: 59282	n:70000
KS ci ratio: 9.693489e-02	ci left: 2.172086e-02	ci right 2.394750e-02	k: 1597	n:70000
FBXO24   70000 perm   17 sec   (4010 perm/sec)   p_kst 2.281429e-02   p_cons 8.468857e-01   p_joint 4.485714e-02

Outputting figure to mutsig2_images.part000000000063/FBXO24.5_1940_70000_0.022814_0.84689_0.044857.png
                gene_name: FBXO24
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 38 percent done.
FBXO40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
Cons ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
KS ci ratio: 9.626139e-03	ci left: 9.384828e-01	ci right 9.476569e-01	k: 9432	n:10000
FBXO40   10000 perm   2 sec   (5717 perm/sec)   p_kst 9.432000e-01   p_cons 1.500000e-02   p_joint 1.280000e-01

Joint ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
Cons ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
KS ci ratio: 6.899079e-03	ci left: 9.383629e-01	ci right 9.449079e-01	k: 18834	n:20000
FBXO40   20000 perm   4 sec   (5004 perm/sec)   p_kst 9.417000e-01   p_cons 1.495000e-02   p_joint 1.325500e-01

Joint ci ratio: 7.633414e-02	ci left: 7.770740e-02	ci right 8.390740e-02	k: 2423	n:30000
Cons ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
KS ci ratio: 5.659753e-03	ci left: 9.384442e-01	ci right 9.438033e-01	k: 28235	n:30000
FBXO40   30000 perm   6 sec   (4778 perm/sec)   p_kst 9.411667e-01   p_cons 1.406667e-02   p_joint 8.076667e-02

Joint ci ratio: 6.095621e-02	ci left: 9.083663e-02	ci right 9.657251e-02	k: 3747	n:40000
Cons ci ratio: 1.638920e-01	ci left: 1.294346e-02	ci right 1.527787e-02	k: 563	n:40000
KS ci ratio: 4.893110e-03	ci left: 9.390026e-01	ci right 9.436330e-01	k: 37654	n:40000
FBXO40   40000 perm   9 sec   (4627 perm/sec)   p_kst 9.413500e-01   p_cons 1.407500e-02   p_joint 9.367500e-02

Joint ci ratio: 5.242315e-02	ci left: 9.793714e-02	ci right 1.032293e-01	k: 5028	n:50000
Cons ci ratio: 1.454432e-01	ci left: 1.327762e-02	ci right 1.537932e-02	k: 715	n:50000
KS ci ratio: 4.383120e-03	ci left: 9.390819e-01	ci right 9.432267e-01	k: 47059	n:50000
FBXO40   50000 perm   11 sec   (4504 perm/sec)   p_kst 9.411800e-01   p_cons 1.430000e-02   p_joint 1.005600e-01

Joint ci ratio: 4.967813e-02	ci left: 9.167627e-02	ci right 9.636308e-02	k: 5640	n:60000
Cons ci ratio: 1.320093e-01	ci left: 1.352646e-02	ci right 1.545426e-02	k: 868	n:60000
KS ci ratio: 3.985337e-03	ci left: 9.397108e-01	ci right 9.434797e-01	k: 56497	n:60000
FBXO40   60000 perm   14 sec   (4404 perm/sec)   p_kst 9.416167e-01   p_cons 1.446667e-02   p_joint 9.400000e-02

Joint ci ratio: 5.100007e-02	ci left: 7.584023e-02	ci right 7.982342e-02	k: 5447	n:70000
Cons ci ratio: 1.231343e-01	ci left: 1.339197e-02	ci right 1.516291e-02	k: 998	n:70000
KS ci ratio: 3.679172e-03	ci left: 9.401705e-01	ci right 9.436499e-01	k: 65935	n:70000
FBXO40   70000 perm   16 sec   (4290 perm/sec)   p_kst 9.419286e-01   p_cons 1.425714e-02   p_joint 7.781429e-02

Joint ci ratio: 4.835901e-02	ci left: 7.406159e-02	ci right 7.774423e-02	k: 6071	n:80000
Cons ci ratio: 1.165201e-01	ci left: 1.313655e-02	ci right 1.477397e-02	k: 1115	n:80000
KS ci ratio: 3.428630e-03	ci left: 9.406998e-01	ci right 9.439430e-01	k: 75387	n:80000
FBXO40   80000 perm   19 sec   (4205 perm/sec)   p_kst 9.423375e-01   p_cons 1.393750e-02   p_joint 7.588750e-02

Joint ci ratio: 4.440830e-02	ci left: 7.790564e-02	ci right 8.145484e-02	k: 7170	n:90000
Cons ci ratio: 1.089576e-01	ci left: 1.340472e-02	ci right 1.496016e-02	k: 1275	n:90000
KS ci ratio: 3.222713e-03	ci left: 9.411280e-01	ci right 9.441768e-01	k: 84840	n:90000
FBXO40   90000 perm   22 sec   (4126 perm/sec)   p_kst 9.426667e-01   p_cons 1.416667e-02   p_joint 7.966667e-02

Joint ci ratio: 4.212592e-02	ci left: 7.800882e-02	ci right 8.137561e-02	k: 7968	n:100000
Cons ci ratio: 1.019098e-01	ci left: 1.383644e-02	ci right 1.533191e-02	k: 1457	n:100000
KS ci ratio: 3.068513e-03	ci left: 9.408066e-01	ci right 9.437077e-01	k: 94227	n:100000
FBXO40   100000 perm   25 sec   (4049 perm/sec)   p_kst 9.422700e-01   p_cons 1.457000e-02   p_joint 7.968000e-02

Joint ci ratio: 3.676018e-02	ci left: 9.196605e-02	ci right 9.541904e-02	k: 10305	n:110000
Cons ci ratio: 9.743884e-02	ci left: 1.379298e-02	ci right 1.521460e-02	k: 1594	n:110000
KS ci ratio: 2.928798e-03	ci left: 9.407587e-01	ci right 9.435270e-01	k: 103637	n:110000
FBXO40   110000 perm   28 sec   (3978 perm/sec)   p_kst 9.421545e-01   p_cons 1.449091e-02   p_joint 9.368182e-02

Outputting figure to mutsig2_images.part000000000063/FBXO40.5_2142_110000_0.94215_0.014491_0.093682.png
                gene_name: FBXO40
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.095 

Current progress: 40 percent done.
FAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
Cons ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
FAR2   10000 perm   2 sec   (5563 perm/sec)   p_kst 3.727000e-01   p_cons 1.020000e-01   p_joint 2.611000e-01

Joint ci ratio: 5.220701e-02	ci left: 2.141264e-01	ci right 2.256552e-01	k: 4397	n:20000
Cons ci ratio: 8.280953e-02	ci left: 9.656264e-02	ci right 1.049538e-01	k: 2014	n:20000
KS ci ratio: 3.565150e-02	ci left: 3.699778e-01	ci right 3.834581e-01	k: 7534	n:20000
FAR2   20000 perm   4 sec   (4922 perm/sec)   p_kst 3.767000e-01   p_cons 1.007000e-01   p_joint 2.198500e-01

Outputting figure to mutsig2_images.part000000000063/FAR2.4_1592_20000_0.3767_0.1007_0.21985.png
                gene_name: FAR2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 42 percent done.
FASLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.229455e-02	ci left: 4.521908e-01	ci right 4.718314e-01	k: 4620	n:10000
Cons ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
KS ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
FASLG   10000 perm   2 sec   (6073 perm/sec)   p_kst 2.662000e-01   p_cons 3.939000e-01   p_joint 4.620000e-01

Outputting figure to mutsig2_images.part000000000063/FASLG.4_862_10000_0.2662_0.3939_0.462.png
                gene_name: FASLG
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 44 percent done.
FASN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
Cons ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
KS ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
FASN   10000 perm   3 sec   (3545 perm/sec)   p_kst 3.460000e-01   p_cons 3.931000e-01   p_joint 5.690000e-01

Outputting figure to mutsig2_images.part000000000063/FASN.4_7704_10000_0.346_0.3931_0.569.png
                gene_name: FASN
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 45 percent done.
FASTKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
Cons ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
FASTKD3   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.059000e-01   p_cons 1.437000e-01   p_joint 9.900000e-02

Joint ci ratio: 8.162098e-02	ci left: 9.916397e-02	ci right 1.076517e-01	k: 2067	n:20000
Cons ci ratio: 6.847146e-02	ci left: 1.359578e-01	ci right 1.456469e-01	k: 2815	n:20000
KS ci ratio: 8.107548e-02	ci left: 1.003913e-01	ci right 1.089240e-01	k: 2092	n:20000
FASTKD3   20000 perm   4 sec   (4861 perm/sec)   p_kst 1.046000e-01   p_cons 1.407500e-01   p_joint 1.033500e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD3.4_2013_20000_0.1046_0.14075_0.10335.png
                gene_name: FASTKD3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 47 percent done.
FBXL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
Cons ci ratio: 5.366825e-02	ci left: 3.384607e-01	ci right 3.572280e-01	k: 3478	n:10000
KS ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
FBXL13   10000 perm   2 sec   (5672 perm/sec)   p_kst 5.566000e-01   p_cons 3.478000e-01   p_joint 5.850000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL13.4_2280_10000_0.5566_0.3478_0.585.png
                gene_name: FBXL13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 49 percent done.
FBXL21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
Cons ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
KS ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
FBXL21   10000 perm   2 sec   (5917 perm/sec)   p_kst 4.007000e-01   p_cons 8.040000e-02   p_joint 2.587000e-01

Joint ci ratio: 5.301910e-02	ci left: 2.089270e-01	ci right 2.203560e-01	k: 4292	n:20000
Cons ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
KS ci ratio: 3.339956e-02	ci left: 4.009781e-01	ci right 4.146487e-01	k: 8156	n:20000
FBXL21   20000 perm   4 sec   (5227 perm/sec)   p_kst 4.078000e-01   p_cons 8.620000e-02   p_joint 2.146000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL21.4_1321_20000_0.4078_0.0862_0.2146.png
                gene_name: FBXL21
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 51 percent done.
FBXO21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
Cons ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
KS ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
FBXO21   10000 perm   2 sec   (5304 perm/sec)   p_kst 1.346000e-01   p_cons 3.156000e-01   p_joint 2.603000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO21.4_1935_10000_0.1346_0.3156_0.2603.png
                gene_name: FBXO21
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
FBXO30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
Cons ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
KS ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
FBXO30   10000 perm   2 sec   (5616 perm/sec)   p_kst 4.377000e-01   p_cons 8.176000e-01   p_joint 5.672000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO30.4_2246_10000_0.4377_0.8176_0.5672.png
                gene_name: FBXO30
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 55 percent done.
FARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 4.189710e-03	ci left: 9.865389e-01	ci right 9.907693e-01	k: 9888	n:10000
KS ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
FARP2   10000 perm   2 sec   (5210 perm/sec)   p_kst 3.024000e-01   p_cons 9.888000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000063/FARP2.3_3269_10000_0.3024_0.9888_0.5536.png
                gene_name: FARP2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 56 percent done.
FARSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
Cons ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
KS ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
FARSB   10000 perm   2 sec   (6354 perm/sec)   p_kst 4.421000e-01   p_cons 3.020000e-02   p_joint 2.392000e-01

Joint ci ratio: 3.313138e-02	ci left: 4.048676e-01	ci right 4.185580e-01	k: 8234	n:20000
Cons ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
KS ci ratio: 3.133476e-02	ci left: 4.320566e-01	ci right 4.458611e-01	k: 8779	n:20000
FARSB   20000 perm   4 sec   (5565 perm/sec)   p_kst 4.389500e-01   p_cons 3.050000e-02   p_joint 4.117000e-01

Joint ci ratio: 2.885577e-02	ci left: 3.753335e-01	ci right 3.863562e-01	k: 11425	n:30000
Cons ci ratio: 1.295079e-01	ci left: 2.771117e-02	ci right 3.158063e-02	k: 888	n:30000
KS ci ratio: 2.549650e-02	ci left: 4.350380e-01	ci right 4.463068e-01	k: 13220	n:30000
FARSB   30000 perm   6 sec   (5281 perm/sec)   p_kst 4.406667e-01   p_cons 2.960000e-02   p_joint 3.808333e-01

Joint ci ratio: 3.344195e-02	ci left: 2.513804e-01	ci right 2.599551e-01	k: 10226	n:40000
Cons ci ratio: 1.121251e-01	ci left: 2.798515e-02	ci right 3.133359e-02	k: 1185	n:40000
KS ci ratio: 2.196449e-02	ci left: 4.383985e-01	ci right 4.481597e-01	k: 17731	n:40000
FARSB   40000 perm   8 sec   (5086 perm/sec)   p_kst 4.432750e-01   p_cons 2.962500e-02   p_joint 2.556500e-01

Joint ci ratio: 3.048603e-02	ci left: 2.446970e-01	ci right 2.522923e-01	k: 12424	n:50000
Cons ci ratio: 1.007618e-01	ci left: 2.789769e-02	ci right 3.087729e-02	k: 1468	n:50000
KS ci ratio: 1.966950e-02	ci left: 4.383197e-01	ci right 4.470469e-01	k: 22134	n:50000
FARSB   50000 perm   10 sec   (4937 perm/sec)   p_kst 4.426800e-01   p_cons 2.936000e-02   p_joint 2.484800e-01

Joint ci ratio: 2.778891e-02	ci left: 2.455769e-01	ci right 2.525140e-01	k: 14942	n:60000
Cons ci ratio: 9.118103e-02	ci left: 2.851910e-02	ci right 3.125996e-02	k: 1792	n:60000
KS ci ratio: 1.795813e-02	ci left: 4.386369e-01	ci right 4.466020e-01	k: 26557	n:60000
FARSB   60000 perm   12 sec   (4815 perm/sec)   p_kst 4.426167e-01   p_cons 2.986667e-02   p_joint 2.490333e-01

Outputting figure to mutsig2_images.part000000000063/FARSB.3_1838_60000_0.44262_0.029867_0.24903.png
                gene_name: FARSB
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.25 

Current progress: 58 percent done.
FAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
KS ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
FAS   10000 perm   2 sec   (6394 perm/sec)   p_kst 6.602000e-01   p_cons 6.102000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FAS.3_1044_10000_0.6602_0.6102_1.png
                gene_name: FAS
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
FBLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
FBLIM1   10000 perm   2 sec   (5870 perm/sec)   p_kst 3.304000e-01   p_cons 7.549000e-01   p_joint 5.718000e-01

Outputting figure to mutsig2_images.part000000000063/FBLIM1.3_1385_10000_0.3304_0.7549_0.5718.png
                gene_name: FBLIM1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 62 percent done.
FBLN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
Cons ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
FBLN5   10000 perm   2 sec   (6090 perm/sec)   p_kst 3.309000e-01   p_cons 7.355000e-01   p_joint 4.012000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN5.3_1391_10000_0.3309_0.7355_0.4012.png
                gene_name: FBLN5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 64 percent done.
FBXL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
Cons ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
FBXL18   10000 perm   2 sec   (5776 perm/sec)   p_kst 2.590000e-02   p_cons 2.689000e-01   p_joint 4.230000e-02

Joint ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
Cons ci ratio: 4.757194e-02	ci left: 2.473831e-01	ci right 2.594887e-01	k: 5068	n:20000
KS ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
FBXL18   20000 perm   4 sec   (5070 perm/sec)   p_kst 2.595000e-02   p_cons 2.534000e-01   p_joint 2.675000e-02

Joint ci ratio: 7.501217e-02	ci left: 8.029511e-02	ci right 8.658584e-02	k: 2502	n:30000
Cons ci ratio: 3.900217e-02	ci left: 2.469622e-01	ci right 2.568193e-01	k: 7556	n:30000
KS ci ratio: 1.387939e-01	ci left: 2.409978e-02	ci right 2.772616e-02	k: 776	n:30000
FBXL18   30000 perm   6 sec   (4744 perm/sec)   p_kst 2.586667e-02   p_cons 2.518667e-01   p_joint 8.340000e-02

Joint ci ratio: 1.210418e-01	ci left: 2.400146e-02	ci right 2.711794e-02	k: 1021	n:40000
Cons ci ratio: 3.295695e-02	ci left: 2.569497e-01	ci right 2.655849e-01	k: 10450	n:40000
KS ci ratio: 1.197848e-01	ci left: 2.451102e-02	ci right 2.765829e-02	k: 1042	n:40000
FBXL18   40000 perm   9 sec   (4594 perm/sec)   p_kst 2.605000e-02   p_cons 2.612500e-01   p_joint 2.552500e-02

Joint ci ratio: 1.062120e-01	ci left: 2.510970e-02	ci right 2.794563e-02	k: 1325	n:50000
Cons ci ratio: 2.950015e-02	ci left: 2.571146e-01	ci right 2.648331e-01	k: 13048	n:50000
KS ci ratio: 1.078095e-01	ci left: 2.436954e-02	ci right 2.716589e-02	k: 1287	n:50000
FBXL18   50000 perm   11 sec   (4481 perm/sec)   p_kst 2.574000e-02   p_cons 2.609600e-01   p_joint 2.650000e-02

Joint ci ratio: 8.775828e-02	ci left: 3.076919e-02	ci right 3.360963e-02	k: 1930	n:60000
Cons ci ratio: 2.690520e-02	ci left: 2.578045e-01	ci right 2.648520e-01	k: 15679	n:60000
KS ci ratio: 9.949866e-02	ci left: 2.396058e-02	ci right 2.648563e-02	k: 1512	n:60000
FBXL18   60000 perm   14 sec   (4382 perm/sec)   p_kst 2.520000e-02   p_cons 2.613167e-01   p_joint 3.216667e-02

Outputting figure to mutsig2_images.part000000000063/FBXL18.3_2177_60000_0.0252_0.26132_0.032167.png
                gene_name: FBXL18
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 65 percent done.
FBXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
Cons ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
KS ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
FBXL3   10000 perm   2 sec   (5927 perm/sec)   p_kst 2.762000e-01   p_cons 2.220000e-01   p_joint 3.411000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL3.3_1303_10000_0.2762_0.222_0.3411.png
                gene_name: FBXL3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 67 percent done.
FBXL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
FBXL5   10000 perm   2 sec   (5552 perm/sec)   p_kst 6.303000e-01   p_cons 3.713000e-01   p_joint 8.306000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL5.3_2120_10000_0.6303_0.3713_0.8306.png
                gene_name: FBXL5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 69 percent done.
FBXO47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
FBXO47   10000 perm   2 sec   (6050 perm/sec)   p_kst 7.994000e-01   p_cons 5.130000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO47.3_1399_10000_0.7994_0.513_1.png
                gene_name: FBXO47
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FARSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
FARSA   10000 perm   2 sec   (6155 perm/sec)   p_kst 7.558000e-01   p_cons 1.790000e-02   p_joint 5.660000e-02

Joint ci ratio: 1.028190e-01	ci left: 6.425622e-02	ci right 7.127008e-02	k: 1354	n:20000
Cons ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
KS ci ratio: 1.580265e-02	ci left: 7.486752e-01	ci right 7.606507e-01	k: 15094	n:20000
FARSA   20000 perm   4 sec   (5431 perm/sec)   p_kst 7.547000e-01   p_cons 1.785000e-02   p_joint 6.770000e-02

Joint ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
Cons ci ratio: 1.684372e-01	ci left: 1.623808e-02	ci right 1.925634e-02	k: 531	n:30000
KS ci ratio: 1.287496e-02	ci left: 7.505953e-01	ci right 7.603552e-01	k: 22665	n:30000
FARSA   30000 perm   6 sec   (5156 perm/sec)   p_kst 7.555000e-01   p_cons 1.770000e-02   p_joint 6.010000e-02

Joint ci ratio: 1.024989e-01	ci left: 3.346411e-02	ci right 3.710376e-02	k: 1410	n:40000
Cons ci ratio: 1.455931e-01	ci left: 1.650272e-02	ci right 1.911795e-02	k: 711	n:40000
KS ci ratio: 1.117269e-02	ci left: 7.505029e-01	ci right 7.589601e-01	k: 30190	n:40000
FARSA   40000 perm   8 sec   (4946 perm/sec)   p_kst 7.547500e-01   p_cons 1.777500e-02   p_joint 3.525000e-02

Joint ci ratio: 9.027479e-02	ci left: 3.469712e-02	ci right 3.799699e-02	k: 1816	n:50000
Cons ci ratio: 1.303720e-01	ci left: 1.660101e-02	ci right 1.893546e-02	k: 887	n:50000
KS ci ratio: 1.003554e-02	ci left: 7.493761e-01	ci right 7.569544e-01	k: 37659	n:50000
FARSA   50000 perm   10 sec   (4791 perm/sec)   p_kst 7.531800e-01   p_cons 1.774000e-02   p_joint 3.632000e-02

Joint ci ratio: 8.265356e-02	ci left: 3.463788e-02	ci right 3.764054e-02	k: 2167	n:60000
Cons ci ratio: 1.187636e-01	ci left: 1.677323e-02	ci right 1.890711e-02	k: 1069	n:60000
KS ci ratio: 9.171339e-03	ci left: 7.492943e-01	ci right 7.562146e-01	k: 45166	n:60000
FARSA   60000 perm   13 sec   (4675 perm/sec)   p_kst 7.527667e-01   p_cons 1.781667e-02   p_joint 3.611667e-02

Joint ci ratio: 7.689113e-02	ci left: 3.442177e-02	ci right 3.718831e-02	k: 2505	n:70000
Cons ci ratio: 1.100586e-01	ci left: 1.681947e-02	ci right 1.879222e-02	k: 1245	n:70000
KS ci ratio: 8.509478e-03	ci left: 7.487403e-01	ci right 7.551531e-01	k: 52637	n:70000
FARSA   70000 perm   15 sec   (4578 perm/sec)   p_kst 7.519571e-01   p_cons 1.778571e-02   p_joint 3.578571e-02

Joint ci ratio: 7.590464e-02	ci left: 3.103654e-02	ci right 3.349753e-02	k: 2580	n:80000
Cons ci ratio: 1.029873e-01	ci left: 1.687065e-02	ci right 1.871455e-02	k: 1422	n:80000
KS ci ratio: 7.955242e-03	ci left: 7.491678e-01	ci right 7.551639e-01	k: 60174	n:80000
FARSA   80000 perm   18 sec   (4481 perm/sec)   p_kst 7.521750e-01   p_cons 1.777500e-02   p_joint 3.225000e-02

Joint ci ratio: 7.114222e-02	ci left: 3.147115e-02	ci right 3.380354e-02	k: 2936	n:90000
Cons ci ratio: 9.709358e-02	ci left: 1.692447e-02	ci right 1.866236e-02	k: 1600	n:90000
KS ci ratio: 7.496867e-03	ci left: 7.495107e-01	ci right 7.551619e-01	k: 67711	n:90000
FARSA   90000 perm   20 sec   (4396 perm/sec)   p_kst 7.523444e-01   p_cons 1.777778e-02   p_joint 3.262222e-02

Outputting figure to mutsig2_images.part000000000063/FARSA.2_1579_90000_0.75234_0.017778_0.032622.png
                gene_name: FARSA
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 73 percent done.
FBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
KS ci ratio: 1.791163e-02	ci left: 8.197466e-01	ci right 8.346623e-01	k: 8273	n:10000
FBF1   10000 perm   2 sec   (5217 perm/sec)   p_kst 8.273000e-01   p_cons 1.420000e-02   p_joint 7.200000e-02

Joint ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
Cons ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
KS ci ratio: 1.275346e-02	ci left: 8.199654e-01	ci right 8.305399e-01	k: 16506	n:20000
FBF1   20000 perm   4 sec   (4673 perm/sec)   p_kst 8.253000e-01   p_cons 1.660000e-02   p_joint 2.720000e-02

Joint ci ratio: 1.387023e-01	ci left: 2.413198e-02	ci right 2.776061e-02	k: 777	n:30000
Cons ci ratio: 1.727866e-01	ci left: 1.540785e-02	ci right 1.835345e-02	k: 505	n:30000
KS ci ratio: 1.039738e-02	ci left: 8.213926e-01	ci right 8.300108e-01	k: 24772	n:30000
FBF1   30000 perm   7 sec   (4469 perm/sec)   p_kst 8.257333e-01   p_cons 1.683333e-02   p_joint 2.590000e-02

Joint ci ratio: 7.229074e-02	ci left: 6.599428e-02	ci right 7.096859e-02	k: 2738	n:40000
Cons ci ratio: 1.494880e-01	ci left: 1.563542e-02	ci right 1.818541e-02	k: 675	n:40000
KS ci ratio: 9.020233e-03	ci left: 8.214672e-01	ci right 8.289355e-01	k: 33009	n:40000
FBF1   40000 perm   9 sec   (4311 perm/sec)   p_kst 8.252250e-01   p_cons 1.687500e-02   p_joint 6.845000e-02

Joint ci ratio: 1.102500e-01	ci left: 2.329882e-02	ci right 2.603675e-02	k: 1232	n:50000
Cons ci ratio: 1.355121e-01	ci left: 1.534355e-02	ci right 1.759309e-02	k: 822	n:50000
KS ci ratio: 8.064694e-03	ci left: 8.219832e-01	ci right 8.286590e-01	k: 41267	n:50000
FBF1   50000 perm   12 sec   (4186 perm/sec)   p_kst 8.253400e-01   p_cons 1.644000e-02   p_joint 2.464000e-02

Joint ci ratio: 1.014770e-01	ci left: 2.303389e-02	ci right 2.551242e-02	k: 1455	n:60000
Cons ci ratio: 1.253676e-01	ci left: 1.502729e-02	ci right 1.705325e-02	k: 961	n:60000
KS ci ratio: 7.367283e-03	ci left: 8.220699e-01	ci right 8.281653e-01	k: 49508	n:60000
FBF1   60000 perm   15 sec   (4091 perm/sec)   p_kst 8.251333e-01   p_cons 1.601667e-02   p_joint 2.425000e-02

Joint ci ratio: 7.497281e-02	ci left: 3.617480e-02	ci right 3.900655e-02	k: 2630	n:70000
Cons ci ratio: 1.154079e-01	ci left: 1.527774e-02	ci right 1.716267e-02	k: 1134	n:70000
KS ci ratio: 6.811085e-03	ci left: 8.227109e-01	ci right 8.283478e-01	k: 57788	n:70000
FBF1   70000 perm   17 sec   (4008 perm/sec)   p_kst 8.255429e-01   p_cons 1.620000e-02   p_joint 3.757143e-02

Joint ci ratio: 7.101713e-02	ci left: 3.538308e-02	ci right 3.800065e-02	k: 2934	n:80000
Cons ci ratio: 1.079603e-01	ci left: 1.533652e-02	ci right 1.709882e-02	k: 1296	n:80000
KS ci ratio: 6.385945e-03	ci left: 8.222233e-01	ci right 8.275032e-01	k: 65990	n:80000
FBF1   80000 perm   20 sec   (3931 perm/sec)   p_kst 8.248750e-01   p_cons 1.620000e-02   p_joint 3.667500e-02

Joint ci ratio: 6.253482e-02	ci left: 4.052362e-02	ci right 4.315046e-02	k: 3764	n:90000
Cons ci ratio: 1.024708e-01	ci left: 1.517949e-02	ci right 1.682970e-02	k: 1439	n:90000
KS ci ratio: 6.025061e-03	ci left: 8.221664e-01	ci right 8.271460e-01	k: 74220	n:90000
FBF1   90000 perm   23 sec   (3841 perm/sec)   p_kst 8.246667e-01   p_cons 1.598889e-02   p_joint 4.182222e-02

Joint ci ratio: 5.946933e-02	ci left: 4.040032e-02	ci right 4.288636e-02	k: 4163	n:100000
Cons ci ratio: 9.711988e-02	ci left: 1.525089e-02	ci right 1.681736e-02	k: 1602	n:100000
KS ci ratio: 5.720744e-03	ci left: 8.220475e-01	ci right 8.267737e-01	k: 82442	n:100000
FBF1   100000 perm   26 sec   (3775 perm/sec)   p_kst 8.244200e-01   p_cons 1.602000e-02   p_joint 4.163000e-02

Outputting figure to mutsig2_images.part000000000063/FBF1.2_3514_100000_0.82442_0.01602_0.04163.png
                gene_name: FBF1
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 75 percent done.
FBLN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
KS ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
FBLN7   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.604000e-01   p_cons 3.862000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN7.2_1352_10000_0.5604_0.3862_0.4808.png
                gene_name: FBLN7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 76 percent done.
FBXL12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
Cons ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
FBXL12   10000 perm   1 sec   (6689 perm/sec)   p_kst 5.030000e-01   p_cons 2.422000e-01   p_joint 3.659000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL12.2_993_10000_0.503_0.2422_0.3659.png
                gene_name: FBXL12
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 78 percent done.
FBXL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
KS ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
FBXL17   10000 perm   2 sec   (5920 perm/sec)   p_kst 6.212000e-01   p_cons 5.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXL17.2_2142_10000_0.6212_0.5772_1.png
                gene_name: FBXL17
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FBXL19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
FBXL19   10000 perm   2 sec   (6150 perm/sec)   p_kst 6.075000e-01   p_cons 1.218000e-01   p_joint 1.704000e-01

Joint ci ratio: 8.151112e-02	ci left: 9.940942e-02	ci right 1.079062e-01	k: 2072	n:20000
Cons ci ratio: 7.348642e-02	ci left: 1.199542e-01	ci right 1.291552e-01	k: 2490	n:20000
KS ci ratio: 2.239358e-02	ci left: 5.982353e-01	ci right 6.118342e-01	k: 12101	n:20000
FBXL19   20000 perm   4 sec   (5343 perm/sec)   p_kst 6.050500e-01   p_cons 1.245000e-01   p_joint 1.036000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL19.2_2129_20000_0.60505_0.1245_0.1036.png
                gene_name: FBXL19
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 82 percent done.
FBXL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
Cons ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KS ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
FBXL4   10000 perm   2 sec   (5867 perm/sec)   p_kst 9.475000e-01   p_cons 4.433000e-01   p_joint 9.475000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL4.2_1894_10000_0.9475_0.4433_0.9475.png
                gene_name: FBXL4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 84 percent done.
FBXO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
FBXO10   10000 perm   2 sec   (5453 perm/sec)   p_kst 9.398000e-01   p_cons 3.186000e-01   p_joint 7.450000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO10.2_2911_10000_0.9398_0.3186_0.745.png
                gene_name: FBXO10
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 85 percent done.
FBXO11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
KS ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
FBXO11   10000 perm   2 sec   (5680 perm/sec)   p_kst 3.197000e-01   p_cons 4.700000e-02   p_joint 4.790000e-02

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 6.767631e-02	ci left: 1.387669e-01	ci right 1.485369e-01	k: 2872	n:20000
KS ci ratio: 4.039245e-02	ci left: 3.136361e-01	ci right 3.266162e-01	k: 6402	n:20000
FBXO11   20000 perm   4 sec   (4956 perm/sec)   p_kst 3.201000e-01   p_cons 1.436000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO11.2_2966_20000_0.3201_0.1436_1.png
                gene_name: FBXO11
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
FBXO16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
Cons ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
FBXO16   10000 perm   1 sec   (7147 perm/sec)   p_kst 9.328000e-01   p_cons 9.516000e-01   p_joint 9.766000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO16.2_911_10000_0.9328_0.9516_0.9766.png
                gene_name: FBXO16
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 89 percent done.
FBXO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
FBXO2   10000 perm   2 sec   (6655 perm/sec)   p_kst 3.782000e-01   p_cons 1.318000e-01   p_joint 1.231000e-01

Joint ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
Cons ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
KS ci ratio: 3.566289e-02	ci left: 3.698284e-01	ci right 3.833075e-01	k: 7531	n:20000
FBXO2   20000 perm   3 sec   (5806 perm/sec)   p_kst 3.765500e-01   p_cons 1.328000e-01   p_joint 1.018000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO2.2_915_20000_0.37655_0.1328_0.1018.png
                gene_name: FBXO2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 91 percent done.
FBXO25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
Cons ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
FBXO25   10000 perm   2 sec   (6478 perm/sec)   p_kst 4.559000e-01   p_cons 3.258000e-01   p_joint 4.980000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO25.2_1144_10000_0.4559_0.3258_0.498.png
                gene_name: FBXO25
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 93 percent done.
FBXO33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
Cons ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
KS ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
FBXO33   10000 perm   2 sec   (6070 perm/sec)   p_kst 2.208000e-01   p_cons 1.684000e-01   p_joint 3.740000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO33.2_1684_10000_0.2208_0.1684_0.374.png
                gene_name: FBXO33
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 95 percent done.
FBXO34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
Cons ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
KS ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
FBXO34   10000 perm   2 sec   (5963 perm/sec)   p_kst 8.998000e-01   p_cons 2.080000e-02   p_joint 9.165000e-01

Joint ci ratio: 3.318958e-02	ci left: 4.040199e-01	ci right 4.177060e-01	k: 8217	n:20000
Cons ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
KS ci ratio: 9.287003e-03	ci left: 8.948425e-01	ci right 9.032411e-01	k: 17982	n:20000
FBXO34   20000 perm   4 sec   (5241 perm/sec)   p_kst 8.991000e-01   p_cons 2.050000e-02   p_joint 4.108500e-01

Joint ci ratio: 4.852982e-02	ci left: 1.742804e-01	ci right 1.829819e-01	k: 5358	n:30000
Cons ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
KS ci ratio: 7.578262e-03	ci left: 8.957378e-01	ci right 9.025847e-01	k: 26976	n:30000
FBXO34   30000 perm   6 sec   (4998 perm/sec)   p_kst 8.992000e-01   p_cons 2.040000e-02   p_joint 1.786000e-01

Joint ci ratio: 4.872457e-02	ci left: 1.358710e-01	ci right 1.426815e-01	k: 5570	n:40000
Cons ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
KS ci ratio: 6.543790e-03	ci left: 8.967399e-01	ci right 9.026519e-01	k: 35989	n:40000
FBXO34   40000 perm   8 sec   (4816 perm/sec)   p_kst 8.997250e-01   p_cons 2.017500e-02   p_joint 1.392500e-01

Joint ci ratio: 3.532429e-02	ci left: 1.941174e-01	ci right 2.011177e-01	k: 9880	n:50000
Cons ci ratio: 1.212984e-01	ci left: 1.921762e-02	ci right 2.171849e-02	k: 1022	n:50000
KS ci ratio: 5.843935e-03	ci left: 8.973372e-01	ci right 9.026163e-01	k: 45000	n:50000
FBXO34   50000 perm   11 sec   (4607 perm/sec)   p_kst 9.000000e-01   p_cons 2.044000e-02   p_joint 1.976000e-01

Joint ci ratio: 3.555210e-02	ci left: 1.654796e-01	ci right 1.714858e-01	k: 10108	n:60000
Cons ci ratio: 1.103908e-01	ci left: 1.944592e-02	ci right 2.173411e-02	k: 1234	n:60000
KS ci ratio: 5.343591e-03	ci left: 8.972686e-01	ci right 9.020926e-01	k: 53982	n:60000
FBXO34   60000 perm   13 sec   (4503 perm/sec)   p_kst 8.997000e-01   p_cons 2.056667e-02   p_joint 1.684667e-01

Joint ci ratio: 4.086950e-02	ci left: 1.137782e-01	ci right 1.185394e-01	k: 8130	n:70000
Cons ci ratio: 1.014794e-01	ci left: 1.981125e-02	ci right 2.194301e-02	k: 1460	n:70000
KS ci ratio: 4.947953e-03	ci left: 8.974221e-01	ci right 9.018876e-01	k: 62977	n:70000
FBXO34   70000 perm   16 sec   (4407 perm/sec)   p_kst 8.996714e-01   p_cons 2.085714e-02   p_joint 1.161429e-01

Joint ci ratio: 2.797444e-02	ci left: 1.943108e-01	ci right 1.998361e-01	k: 15765	n:80000
Cons ci ratio: 9.480118e-02	ci left: 1.993210e-02	ci right 2.192786e-02	k: 1673	n:80000
KS ci ratio: 4.641398e-03	ci left: 8.970552e-01	ci right 9.012408e-01	k: 71933	n:80000
FBXO34   80000 perm   19 sec   (4319 perm/sec)   p_kst 8.991625e-01   p_cons 2.091250e-02   p_joint 1.970625e-01

Outputting figure to mutsig2_images.part000000000063/FBXO34.2_2140_80000_0.89916_0.020913_0.19706.png
                gene_name: FBXO34
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 96 percent done.
FBXO41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
Cons ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
KS ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
FBXO41   10000 perm   2 sec   (5854 perm/sec)   p_kst 1.885000e-01   p_cons 4.521000e-01   p_joint 4.572000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO41.2_2676_10000_0.1885_0.4521_0.4572.png
                gene_name: FBXO41
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 98 percent done.
FBXO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
FBXO5   10000 perm   2 sec   (6355 perm/sec)   p_kst 7.645000e-01   p_cons 3.990000e-02   p_joint 1.842000e-01

Joint ci ratio: 3.274800e-02	ci left: 4.105032e-01	ci right 4.242208e-01	k: 8347	n:20000
Cons ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
KS ci ratio: 1.541845e-02	ci left: 7.577495e-01	ci right 7.695738e-01	k: 15274	n:20000
FBXO5   20000 perm   4 sec   (5518 perm/sec)   p_kst 7.637000e-01   p_cons 3.900000e-02   p_joint 4.173500e-01

Joint ci ratio: 2.955546e-02	ci left: 3.641341e-01	ci right 3.750912e-01	k: 11088	n:30000
Cons ci ratio: 1.137677e-01	ci left: 3.589704e-02	ci right 4.025967e-02	k: 1141	n:30000
KS ci ratio: 1.260191e-02	ci left: 7.584817e-01	ci right 7.681340e-01	k: 22900	n:30000
FBXO5   30000 perm   6 sec   (5250 perm/sec)   p_kst 7.633333e-01   p_cons 3.803333e-02   p_joint 3.696000e-01

Joint ci ratio: 2.779098e-02	ci left: 3.275343e-01	ci right 3.367901e-01	k: 13286	n:40000
Cons ci ratio: 9.742279e-02	ci left: 3.700176e-02	ci right 4.081555e-02	k: 1555	n:40000
KS ci ratio: 1.091307e-02	ci left: 7.591533e-01	ci right 7.675084e-01	k: 30534	n:40000
FBXO5   40000 perm   8 sec   (5073 perm/sec)   p_kst 7.633500e-01   p_cons 3.887500e-02   p_joint 3.321500e-01

Outputting figure to mutsig2_images.part000000000063/FBXO5.2_1364_40000_0.76335_0.038875_0.33215.png
                gene_name: FBXO5
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000063
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 63 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 4421950: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000064> was used as the working directory.
Started at Wed Oct 24 17:45:45 2012
Results reported at Wed Oct 24 18:03:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000064.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000064.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 64  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000064.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1209.52 sec.
    Max Memory :      5299 MB
    Max Swap   :      7719 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
64
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 64
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 64: processing genes 5701 - 5790
Calculating significance of each gene.
Using projection method.
5701	FBXW11	1
5702	FBXW12	7.338424e-01
5703	FBXW2	7.262945e-01
5704	FBXW4	7.279007e-01
5705	FBXW5	8.419534e-01
5706	FBXW7	7.594202e-01
5707	FBXW8	8.650942e-01
5708	FBXW9	8.467379e-01
5709	FCAMR	1
5710	FCAR	6.316553e-03
5711	FCER1A	3.721901e-02
5712	FCER1G	2.561807e-01
5713	FCER2	7.743701e-01
5714	FCF1	2.126191e-01
5715	FCGBP	9.082213e-01
5716	FCGR1A	7.895557e-01
5717	FCGR1B	7.813431e-01
5718	FCGR2A	2.952721e-01
5719	FCGR2B	3.535828e-01
5720	FCGR2C	8.214179e-01
5721	FCGR3A	6.854769e-04
5722	FCGR3B	1.055555e-02
5723	FCGRT	1
5724	FCHO1	8.768324e-01
5725	FCHO2	8.843106e-01
5726	FCHSD1	9.515571e-01
5727	FCHSD2	9.626831e-01
5728	FCN1	1
5729	FCN2	5.743143e-02
5730	FCN3	1
5731	FCRL1	4.503896e-04
5732	FCRL2	1.654488e-01
5733	FCRL3	8.139620e-01
5734	FCRL4	2.422461e-02
5735	FCRL5	8.640945e-01
5736	FCRL6	7.378781e-01
5737	FCRLA	9.320296e-02
5738	FCRLB	8.628004e-01
5739	FDFT1	4.511956e-01
5740	FDPS	8.082225e-01
5741	FDX1	1.597520e-01
5742	FDX1L	4.439992e-01
5743	FDXACB1	9.723175e-01
5744	FDXR	8.183156e-01
5745	FECH	6.829219e-01
5746	FEM1A	9.256322e-01
5747	FEM1B	8.351344e-01
5748	FEM1C	1
5749	FEN1	1
5750	FER	2.880966e-01
5751	FER1L5	1
5752	FER1L6	9.388515e-01
5753	FERD3L	5.706738e-06
5754	FERMT1	9.039675e-01
5755	FERMT2	9.608877e-01
5756	FERMT3	7.857641e-01
5757	FES	9.853361e-01
5758	FETUB	2.754096e-01
5759	FEV	3.377201e-01
5760	FEZ1	7.713191e-01
5761	FEZ2	1
5762	FEZF1	4.783257e-01
5763	FEZF2	8.807048e-01
5764	FFAR1	2.143734e-01
5765	FFAR2	5.915942e-01
5766	FFAR3	8.294120e-01
5767	FGA	3.365707e-01
5768	FGB	2.104917e-03
5769	FGD1	1
5770	FGD2	7.608873e-01
5771	FGD3	9.673132e-01
5772	FGD4	8.939686e-01
5773	FGD5	1
5774	FGD6	9.861010e-01
5775	FGF1	5.004134e-01
5776	FGF10	3.715201e-01
5777	FGF11	1
5778	FGF12	1
5779	FGF13	2.402422e-01
In gene FGF14 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 903     n = 1	mu =   9.71e-07
5780	FGF14	6.398379e-04
5781	FGF16	1
5782	FGF17	1
5783	FGF18	5.066457e-01
5784	FGF19	2.350899e-01
5785	FGF2	1
5786	FGF20	3.572321e-01
5787	FGF21	4.125263e-01
5788	FGF22	1
5789	FGF23	6.738506e-02
5790	FGF3	5.285078e-01
Done

Running MutSig 2:
Scatter job 64: processing genes 5701 - 5790
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FER1L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
Cons ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
FER1L6   10000 perm   3 sec   (2868 perm/sec)   p_kst 3.756000e-01   p_cons 5.658000e-01   p_joint 5.083000e-01

Outputting figure to mutsig2_images.part000000000064/FER1L6.25_5734_10000_0.3756_0.5658_0.5083.png
                gene_name: FER1L6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 2 percent done.
FCGBP
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
Cons ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
KS ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
FCGBP   10000 perm   5 sec   (1880 perm/sec)   p_kst 6.000000e-02   p_cons 2.027000e-01   p_joint 9.740000e-02

Joint ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
Cons ci ratio: 5.525524e-02	ci left: 1.954648e-01	ci right 2.066223e-01	k: 4020	n:20000
KS ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
FCGBP   20000 perm   11 sec   (1768 perm/sec)   p_kst 6.175000e-02   p_cons 2.010000e-01   p_joint 6.270000e-02

Joint ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
Cons ci ratio: 4.513229e-02	ci left: 1.963785e-01	ci right 2.054795e-01	k: 6027	n:30000
KS ci ratio: 8.818052e-02	ci left: 5.906845e-02	ci right 6.455012e-02	k: 1853	n:30000
FCGBP   30000 perm   18 sec   (1708 perm/sec)   p_kst 6.176667e-02   p_cons 2.009000e-01   p_joint 7.120000e-02

Outputting figure to mutsig2_images.part000000000064/FCGBP.21_16362_30000_0.061767_0.2009_0.0712.png
                gene_name: FCGBP
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 4 percent done.
FCRL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
KS ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
FCRL5   10000 perm   2 sec   (4001 perm/sec)   p_kst 9.810000e-02   p_cons 4.990000e-02   p_joint 4.300000e-02

Joint ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
Cons ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
KS ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
FCRL5   20000 perm   6 sec   (3632 perm/sec)   p_kst 1.055500e-01   p_cons 4.365000e-02   p_joint 2.250000e-02

Joint ci ratio: 1.084930e-01	ci left: 3.943328e-02	ci right 4.398935e-02	k: 1250	n:30000
Cons ci ratio: 1.030266e-01	ci left: 4.365689e-02	ci right 4.843152e-02	k: 1380	n:30000
KS ci ratio: 6.595802e-02	ci left: 1.018484e-01	ci right 1.088283e-01	k: 3159	n:30000
FCRL5   30000 perm   9 sec   (3504 perm/sec)   p_kst 1.053000e-01   p_cons 4.600000e-02   p_joint 4.166667e-02

Joint ci ratio: 8.678949e-02	ci left: 4.641514e-02	ci right 5.065071e-02	k: 1940	n:40000
Cons ci ratio: 9.037033e-02	ci left: 4.289121e-02	ci right 4.697518e-02	k: 1796	n:40000
KS ci ratio: 5.673347e-02	ci left: 1.035919e-01	ci right 1.096654e-01	k: 4264	n:40000
FCRL5   40000 perm   12 sec   (3417 perm/sec)   p_kst 1.066000e-01   p_cons 4.490000e-02   p_joint 4.850000e-02

Outputting figure to mutsig2_images.part000000000064/FCRL5.16_3002_40000_0.1066_0.0449_0.0485.png
                gene_name: FCRL5
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.051 

Current progress: 5 percent done.
FGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
KS ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
FGB   10000 perm   2 sec   (4623 perm/sec)   p_kst 1.328000e-01   p_cons 2.600000e-01   p_joint 1.699000e-01

Joint ci ratio: 7.117140e-02	ci left: 1.269929e-01	ci right 1.364144e-01	k: 2633	n:20000
Cons ci ratio: 4.684154e-02	ci left: 2.532366e-01	ci right 2.654334e-01	k: 5186	n:20000
KS ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
FGB   20000 perm   5 sec   (4166 perm/sec)   p_kst 1.252000e-01   p_cons 2.593000e-01   p_joint 1.316500e-01

Outputting figure to mutsig2_images.part000000000064/FGB.13_1508_20000_0.1252_0.2593_0.13165.png
                gene_name: FGB
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 7 percent done.
FGD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
KS ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
FGD5   10000 perm   3 sec   (4000 perm/sec)   p_kst 3.100000e-03   p_cons 5.723000e-01   p_joint 1.030000e-02

Joint ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
Cons ci ratio: 2.375108e-02	ci left: 5.697166e-01	ci right 5.834612e-01	k: 11532	n:20000
KS ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
FGD5   20000 perm   5 sec   (3666 perm/sec)   p_kst 4.050000e-03   p_cons 5.766000e-01   p_joint 2.255000e-02

Joint ci ratio: 1.956798e-01	ci left: 1.190744e-02	ci right 1.452143e-02	k: 395	n:30000
Cons ci ratio: 1.945801e-02	ci left: 5.693490e-01	ci right 5.805698e-01	k: 17249	n:30000
KS ci ratio: 3.391472e-01	ci left: 3.682707e-03	ci right 5.215703e-03	k: 132	n:30000
FGD5   30000 perm   8 sec   (3531 perm/sec)   p_kst 4.400000e-03   p_cons 5.749667e-01   p_joint 1.316667e-02

Joint ci ratio: 1.774699e-01	ci left: 1.097988e-02	ci right 1.314182e-02	k: 481	n:40000
Cons ci ratio: 1.687688e-02	ci left: 5.693616e-01	ci right 5.790776e-01	k: 22969	n:40000
KS ci ratio: 2.973832e-01	ci left: 3.682473e-03	ci right 4.991094e-03	k: 172	n:40000
FGD5   40000 perm   12 sec   (3438 perm/sec)   p_kst 4.300000e-03   p_cons 5.742250e-01   p_joint 1.202500e-02

Joint ci ratio: 1.668404e-01	ci left: 1.000837e-02	ci right 1.184908e-02	k: 545	n:50000
Cons ci ratio: 1.509477e-02	ci left: 5.698918e-01	ci right 5.785796e-01	k: 28712	n:50000
KS ci ratio: 2.738917e-01	ci left: 3.521589e-03	ci right 4.657178e-03	k: 203	n:50000
FGD5   50000 perm   15 sec   (3369 perm/sec)   p_kst 4.060000e-03   p_cons 5.742400e-01   p_joint 1.090000e-02

Joint ci ratio: 1.320093e-01	ci left: 1.352646e-02	ci right 1.545426e-02	k: 868	n:60000
Cons ci ratio: 1.379626e-02	ci left: 5.696811e-01	ci right 5.776118e-01	k: 34419	n:60000
KS ci ratio: 2.552092e-01	ci left: 3.417072e-03	ci right 4.431840e-03	k: 234	n:60000
FGD5   60000 perm   18 sec   (3298 perm/sec)   p_kst 3.900000e-03   p_cons 5.736500e-01   p_joint 1.446667e-02

Joint ci ratio: 1.079179e-01	ci left: 1.750072e-02	ci right 1.951091e-02	k: 1294	n:70000
Cons ci ratio: 1.278353e-02	ci left: 5.695687e-01	ci right 5.769109e-01	k: 40127	n:70000
KS ci ratio: 2.346370e-01	ci left: 3.505582e-03	ci right 4.450552e-03	k: 277	n:70000
FGD5   70000 perm   22 sec   (3232 perm/sec)   p_kst 3.957143e-03   p_cons 5.732429e-01   p_joint 1.848571e-02

Joint ci ratio: 1.072066e-01	ci left: 1.555556e-02	ci right 1.732976e-02	k: 1314	n:80000
Cons ci ratio: 1.193882e-02	ci left: 5.705895e-01	ci right 5.774551e-01	k: 45922	n:80000
KS ci ratio: 2.180116e-01	ci left: 3.586255e-03	ci right 4.475307e-03	k: 321	n:80000
FGD5   80000 perm   25 sec   (3178 perm/sec)   p_kst 4.012500e-03   p_cons 5.740250e-01   p_joint 1.642500e-02

Joint ci ratio: 1.104601e-01	ci left: 1.303717e-02	ci right 1.457218e-02	k: 1241	n:90000
Cons ci ratio: 1.126634e-02	ci left: 5.703388e-01	ci right 5.768120e-01	k: 51622	n:90000
KS ci ratio: 2.039248e-01	ci left: 3.671932e-03	ci right 4.516081e-03	k: 367	n:90000
FGD5   90000 perm   29 sec   (3131 perm/sec)   p_kst 4.077778e-03   p_cons 5.735778e-01   p_joint 1.378889e-02

Joint ci ratio: 1.114034e-01	ci left: 1.154823e-02	ci right 1.292028e-02	k: 1222	n:100000
Cons ci ratio: 1.068815e-02	ci left: 5.705077e-01	ci right 5.766481e-01	k: 57358	n:100000
KS ci ratio: 1.913314e-01	ci left: 3.780038e-03	ci right 4.589136e-03	k: 417	n:100000
FGD5   100000 perm   32 sec   (3087 perm/sec)   p_kst 4.170000e-03   p_cons 5.735800e-01   p_joint 1.222000e-02

Joint ci ratio: 1.086701e-01	ci left: 1.105520e-02	ci right 1.233438e-02	k: 1285	n:110000
Cons ci ratio: 1.018808e-02	ci left: 5.707802e-01	ci right 5.766341e-01	k: 63108	n:110000
KS ci ratio: 1.823876e-01	ci left: 3.800367e-03	ci right 4.571590e-03	k: 459	n:110000
FGD5   110000 perm   36 sec   (3043 perm/sec)   p_kst 4.172727e-03   p_cons 5.737091e-01   p_joint 1.168182e-02

Joint ci ratio: 9.389478e-02	ci left: 1.364400e-02	ci right 1.499629e-02	k: 1717	n:120000
Cons ci ratio: 9.739416e-03	ci left: 5.716550e-01	ci right 5.772581e-01	k: 68935	n:120000
KS ci ratio: 1.765441e-01	ci left: 3.730387e-03	ci right 4.460566e-03	k: 490	n:120000
FGD5   120000 perm   40 sec   (3005 perm/sec)   p_kst 4.083333e-03   p_cons 5.744583e-01   p_joint 1.430833e-02

Joint ci ratio: 9.350697e-02	ci left: 1.271436e-02	ci right 1.396902e-02	k: 1733	n:130000
Cons ci ratio: 9.355654e-03	ci left: 5.718531e-01	ci right 5.772359e-01	k: 74691	n:130000
KS ci ratio: 1.654409e-01	ci left: 3.944181e-03	ci right 4.662822e-03	k: 558	n:130000
FGD5   130000 perm   44 sec   (2967 perm/sec)   p_kst 4.292308e-03   p_cons 5.745462e-01   p_joint 1.333077e-02

Joint ci ratio: 9.314505e-02	ci left: 1.191061e-02	ci right 1.308114e-02	k: 1748	n:140000
Cons ci ratio: 9.011713e-03	ci left: 5.721481e-01	ci right 5.773345e-01	k: 80464	n:140000
KS ci ratio: 1.628545e-01	ci left: 3.785718e-03	ci right 4.463645e-03	k: 576	n:140000
FGD5   140000 perm   48 sec   (2929 perm/sec)   p_kst 4.114286e-03   p_cons 5.747429e-01   p_joint 1.248571e-02

Joint ci ratio: 9.241224e-02	ci left: 1.130525e-02	ci right 1.240707e-02	k: 1777	n:150000
Cons ci ratio: 8.706554e-03	ci left: 5.722134e-01	ci right 5.772238e-01	k: 86208	n:150000
KS ci ratio: 1.574878e-01	ci left: 3.789317e-03	ci right 4.443413e-03	k: 616	n:150000
FGD5   150000 perm   52 sec   (2892 perm/sec)   p_kst 4.106667e-03   p_cons 5.747200e-01   p_joint 1.184667e-02

Joint ci ratio: 9.311112e-02	ci left: 1.044583e-02	ci right 1.147201e-02	k: 1752	n:160000
Cons ci ratio: 8.425477e-03	ci left: 5.725608e-01	ci right 5.774115e-01	k: 91998	n:160000
KS ci ratio: 1.520391e-01	ci left: 3.822849e-03	ci right 4.457826e-03	k: 661	n:160000
FGD5   160000 perm   56 sec   (2854 perm/sec)   p_kst 4.131250e-03   p_cons 5.749875e-01   p_joint 1.095000e-02

Joint ci ratio: 7.574170e-02	ci left: 1.492389e-02	ci right 1.610448e-02	k: 2636	n:170000
Cons ci ratio: 8.172331e-03	ci left: 5.727283e-01	ci right 5.774339e-01	k: 97764	n:170000
KS ci ratio: 1.495827e-01	ci left: 3.722489e-03	ci right 4.329911e-03	k: 683	n:170000
FGD5   170000 perm   60 sec   (2816 perm/sec)   p_kst 4.017647e-03   p_cons 5.750824e-01   p_joint 1.550588e-02

Joint ci ratio: 7.842807e-02	ci left: 1.315172e-02	ci right 1.423070e-02	k: 2463	n:180000
Cons ci ratio: 7.931146e-03	ci left: 5.734684e-01	ci right 5.780403e-01	k: 103636	n:180000
KS ci ratio: 1.463078e-01	ci left: 3.681526e-03	ci right 4.267961e-03	k: 714	n:180000
FGD5   180000 perm   65 sec   (2776 perm/sec)   p_kst 3.966667e-03   p_cons 5.757556e-01   p_joint 1.368333e-02

Joint ci ratio: 7.667910e-02	ci left: 1.304786e-02	ci right 1.409338e-02	k: 2577	n:190000
Cons ci ratio: 7.721906e-03	ci left: 5.733844e-01	ci right 5.778344e-01	k: 109366	n:190000
KS ci ratio: 1.429507e-01	ci left: 3.660230e-03	ci right 4.228754e-03	k: 748	n:190000
FGD5   190000 perm   69 sec   (2743 perm/sec)   p_kst 3.936842e-03   p_cons 5.756105e-01   p_joint 1.356316e-02

Joint ci ratio: 7.722299e-02	ci left: 1.222854e-02	ci right 1.321566e-02	k: 2543	n:200000
Cons ci ratio: 7.528704e-03	ci left: 5.732902e-01	ci right 5.776276e-01	k: 115092	n:200000
KS ci ratio: 1.407195e-01	ci left: 3.592951e-03	ci right 4.141583e-03	k: 772	n:200000
FGD5   200000 perm   74 sec   (2712 perm/sec)   p_kst 3.860000e-03   p_cons 5.754600e-01   p_joint 1.271500e-02

Joint ci ratio: 7.727744e-02	ci left: 1.163675e-02	ci right 1.257679e-02	k: 2541	n:210000
Cons ci ratio: 7.232433e-03	ci left: 5.810259e-01	ci right 5.852480e-01	k: 122459	n:210000
KS ci ratio: 1.367921e-01	ci left: 3.628711e-03	ci right 4.166078e-03	k: 817	n:210000
FGD5   210000 perm   78 sec   (2683 perm/sec)   p_kst 3.890476e-03   p_cons 5.831381e-01   p_joint 1.210000e-02

Joint ci ratio: 7.362126e-02	ci left: 1.225410e-02	ci right 1.319517e-02	k: 2798	n:220000
Cons ci ratio: 7.064457e-03	ci left: 5.811910e-01	ci right 5.853159e-01	k: 128316	n:220000
KS ci ratio: 1.340364e-01	ci left: 3.613077e-03	ci right 4.136492e-03	k: 851	n:220000
FGD5   220000 perm   83 sec   (2654 perm/sec)   p_kst 3.868182e-03   p_cons 5.832545e-01   p_joint 1.271818e-02

Joint ci ratio: 6.683838e-02	ci left: 1.424204e-02	ci right 1.523112e-02	k: 3388	n:230000
Cons ci ratio: 6.907790e-03	ci left: 5.813341e-01	ci right 5.853681e-01	k: 134171	n:230000
KS ci ratio: 1.305562e-01	ci left: 3.649372e-03	ci right 4.163254e-03	k: 897	n:230000
FGD5   230000 perm   88 sec   (2625 perm/sec)   p_kst 3.900000e-03   p_cons 5.833522e-01   p_joint 1.473043e-02

Joint ci ratio: 7.830758e-02	ci left: 9.928503e-03	ci right 1.074172e-02	k: 2479	n:240000
Cons ci ratio: 6.769742e-03	ci left: 5.808450e-01	ci right 5.847947e-01	k: 139877	n:240000
KS ci ratio: 1.243914e-01	ci left: 3.864423e-03	ci right 4.380999e-03	k: 988	n:240000
FGD5   240000 perm   92 sec   (2596 perm/sec)   p_kst 4.116667e-03   p_cons 5.828208e-01   p_joint 1.032917e-02

Joint ci ratio: 7.901878e-02	ci left: 9.362639e-03	ci right 1.013679e-02	k: 2436	n:250000
Cons ci ratio: 6.813598e-03	ci left: 5.677564e-01	ci right 5.716420e-01	k: 142425	n:250000
KS ci ratio: 1.220096e-01	ci left: 3.861038e-03	ci right 4.366565e-03	k: 1027	n:250000
FGD5   250000 perm   97 sec   (2567 perm/sec)   p_kst 4.108000e-03   p_cons 5.697000e-01   p_joint 9.744000e-03

Joint ci ratio: 7.772435e-02	ci left: 9.311731e-03	ci right 1.006849e-02	k: 2518	n:260000
Cons ci ratio: 6.683905e-03	ci left: 5.676018e-01	ci right 5.714121e-01	k: 148072	n:260000
KS ci ratio: 1.198159e-01	ci left: 3.854269e-03	ci right 4.349194e-03	k: 1065	n:260000
FGD5   260000 perm   102 sec   (2541 perm/sec)   p_kst 4.096154e-03   p_cons 5.695077e-01   p_joint 9.684615e-03

Joint ci ratio: 7.284613e-02	ci left: 1.022440e-02	ci right 1.100097e-02	k: 2864	n:270000
Cons ci ratio: 6.555004e-03	ci left: 5.679336e-01	ci right 5.716723e-01	k: 153847	n:270000
KS ci ratio: 1.175229e-01	ci left: 3.862457e-03	ci right 4.348283e-03	k: 1107	n:270000
FGD5   270000 perm   107 sec   (2513 perm/sec)   p_kst 4.100000e-03   p_cons 5.698037e-01   p_joint 1.060741e-02

Joint ci ratio: 7.228867e-02	ci left: 1.001700e-02	ci right 1.077176e-02	k: 2909	n:280000
Cons ci ratio: 6.435576e-03	ci left: 5.680673e-01	ci right 5.717384e-01	k: 159573	n:280000
KS ci ratio: 1.152059e-01	ci left: 3.880551e-03	ci right 4.358375e-03	k: 1152	n:280000
FGD5   280000 perm   113 sec   (2487 perm/sec)   p_kst 4.114286e-03   p_cons 5.699036e-01   p_joint 1.038929e-02

Joint ci ratio: 6.965406e-02	ci left: 1.042698e-02	ci right 1.118284e-02	k: 3132	n:290000
Cons ci ratio: 6.324002e-03	ci left: 5.680715e-01	ci right 5.716788e-01	k: 165264	n:290000
KS ci ratio: 1.128789e-01	ci left: 3.907538e-03	ci right 4.378319e-03	k: 1200	n:290000
FGD5   290000 perm   118 sec   (2461 perm/sec)   p_kst 4.137931e-03   p_cons 5.698759e-01   p_joint 1.080000e-02

Joint ci ratio: 6.889315e-02	ci left: 1.030869e-02	ci right 1.104748e-02	k: 3202	n:300000
Cons ci ratio: 6.217404e-03	ci left: 5.681260e-01	ci right 5.716726e-01	k: 170970	n:300000
KS ci ratio: 1.107765e-01	ci left: 3.926333e-03	ci right 4.389993e-03	k: 1246	n:300000
FGD5   300000 perm   123 sec   (2436 perm/sec)   p_kst 4.153333e-03   p_cons 5.699000e-01   p_joint 1.067333e-02

Joint ci ratio: 6.825144e-02	ci left: 1.016952e-02	ci right 1.089128e-02	k: 3263	n:310000
Cons ci ratio: 6.114290e-03	ci left: 5.683163e-01	ci right 5.718050e-01	k: 176719	n:310000
KS ci ratio: 1.090417e-01	ci left: 3.925162e-03	ci right 4.380959e-03	k: 1286	n:310000
FGD5   310000 perm   129 sec   (2411 perm/sec)   p_kst 4.148387e-03   p_cons 5.700613e-01   p_joint 1.052581e-02

Joint ci ratio: 6.745318e-02	ci left: 1.009133e-02	ci right 1.079883e-02	k: 3341	n:320000
Cons ci ratio: 6.017905e-03	ci left: 5.683513e-01	ci right 5.717850e-01	k: 182422	n:320000
KS ci ratio: 1.069820e-01	ci left: 3.954533e-03	ci right 4.404519e-03	k: 1336	n:320000
FGD5   320000 perm   134 sec   (2387 perm/sec)   p_kst 4.175000e-03   p_cons 5.700688e-01   p_joint 1.044063e-02

Joint ci ratio: 6.452438e-02	ci left: 1.070357e-02	ci right 1.142020e-02	k: 3649	n:330000
Cons ci ratio: 5.928211e-03	ci left: 5.681966e-01	ci right 5.715780e-01	k: 188063	n:330000
KS ci ratio: 1.049587e-01	ci left: 3.988101e-03	ci right 4.432796e-03	k: 1388	n:330000
FGD5   330000 perm   140 sec   (2363 perm/sec)   p_kst 4.206061e-03   p_cons 5.698879e-01   p_joint 1.105758e-02

Joint ci ratio: 6.444581e-02	ci left: 1.041765e-02	ci right 1.111425e-02	k: 3659	n:340000
Cons ci ratio: 5.841919e-03	ci left: 5.680925e-01	ci right 5.714239e-01	k: 193718	n:340000
KS ci ratio: 1.032260e-01	ci left: 4.005442e-03	ci right 4.444250e-03	k: 1435	n:340000
FGD5   340000 perm   145 sec   (2338 perm/sec)   p_kst 4.220588e-03   p_cons 5.697588e-01   p_joint 1.076176e-02

Joint ci ratio: 6.496903e-02	ci left: 9.959706e-03	ci right 1.063130e-02	k: 3602	n:350000
Cons ci ratio: 5.758281e-03	ci left: 5.680806e-01	ci right 5.713640e-01	k: 199403	n:350000
KS ci ratio: 1.016453e-01	ci left: 4.016280e-03	ci right 4.449135e-03	k: 1480	n:350000
FGD5   350000 perm   151 sec   (2315 perm/sec)   p_kst 4.228571e-03   p_cons 5.697229e-01   p_joint 1.029143e-02

Joint ci ratio: 6.420879e-02	ci left: 9.918071e-03	ci right 1.057874e-02	k: 3688	n:360000
Cons ci ratio: 5.676141e-03	ci left: 5.682419e-01	ci right 5.714792e-01	k: 205150	n:360000
KS ci ratio: 1.003001e-01	ci left: 4.013021e-03	ci right 4.439464e-03	k: 1520	n:360000
FGD5   360000 perm   157 sec   (2293 perm/sec)   p_kst 4.222222e-03   p_cons 5.698611e-01   p_joint 1.024444e-02

Joint ci ratio: 6.350012e-02	ci left: 9.870750e-03	ci right 1.052074e-02	k: 3771	n:370000
Cons ci ratio: 5.600536e-03	ci left: 5.681217e-01	ci right 5.713151e-01	k: 210796	n:370000
KS ci ratio: 9.932702e-02	ci left: 3.983615e-03	ci right 4.402587e-03	k: 1550	n:370000
FGD5   370000 perm   163 sec   (2270 perm/sec)   p_kst 4.189189e-03   p_cons 5.697189e-01   p_joint 1.019189e-02

Outputting figure to mutsig2_images.part000000000064/FGD5.12_4469_370000_0.0041892_0.56972_0.010192.png
                gene_name: FGD5
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.0042 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0044 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0099 
    ci_joint_bounds_right: 0.011 

Current progress: 9 percent done.
FCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
FCRL1   10000 perm   2 sec   (5171 perm/sec)   p_kst 5.548000e-01   p_cons 6.180000e-01   p_joint 6.487000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL1.11_1400_10000_0.5548_0.618_0.6487.png
                gene_name: FCRL1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 11 percent done.
FCRL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
Cons ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KS ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
FCRL2   10000 perm   2 sec   (5149 perm/sec)   p_kst 3.471000e-01   p_cons 8.450000e-02   p_joint 1.773000e-01

Joint ci ratio: 5.685262e-02	ci left: 1.865614e-01	ci right 1.975283e-01	k: 3840	n:20000
Cons ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
KS ci ratio: 3.708690e-02	ci left: 3.517004e-01	ci right 3.650408e-01	k: 7167	n:20000
FCRL2   20000 perm   4 sec   (4596 perm/sec)   p_kst 3.583500e-01   p_cons 9.085000e-02   p_joint 1.920000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL2.10_1575_20000_0.35835_0.09085_0.192.png
                gene_name: FCRL2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 12 percent done.
FCRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
FCRL3   10000 perm   2 sec   (4781 perm/sec)   p_kst 5.910000e-02   p_cons 9.812000e-01   p_joint 1.475000e-01

Joint ci ratio: 6.476770e-02	ci left: 1.497631e-01	ci right 1.598375e-01	k: 3095	n:20000
Cons ci ratio: 3.888006e-03	ci left: 9.787493e-01	ci right 9.826091e-01	k: 19615	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
FCRL3   20000 perm   5 sec   (4335 perm/sec)   p_kst 5.985000e-02   p_cons 9.807500e-01   p_joint 1.547500e-01

Joint ci ratio: 5.289636e-02	ci left: 1.506249e-01	ci right 1.588421e-01	k: 4641	n:30000
Cons ci ratio: 3.238384e-03	ci left: 9.783172e-01	ci right 9.815222e-01	k: 29399	n:30000
KS ci ratio: 8.805403e-02	ci left: 5.923168e-02	ci right 6.472020e-02	k: 1858	n:30000
FCRL3   30000 perm   7 sec   (4164 perm/sec)   p_kst 6.193333e-02   p_cons 9.799667e-01   p_joint 1.547000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL3.10_2261_30000_0.061933_0.97997_0.1547.png
                gene_name: FCRL3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 14 percent done.
FERD3L
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
FERD3L   10000 perm   2 sec   (6191 perm/sec)   p_kst 4.437000e-01   p_cons 2.100000e-02   p_joint 1.128000e-01

Joint ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
Cons ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
KS ci ratio: 3.156160e-02	ci left: 4.285134e-01	ci right 4.423054e-01	k: 8708	n:20000
FERD3L   20000 perm   4 sec   (5412 perm/sec)   p_kst 4.354000e-01   p_cons 2.205000e-02   p_joint 6.070000e-02

Joint ci ratio: 7.681783e-02	ci left: 7.679047e-02	ci right 8.295785e-02	k: 2395	n:30000
Cons ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
KS ci ratio: 2.578643e-02	ci left: 4.294798e-01	ci right 4.407328e-01	k: 13053	n:30000
FERD3L   30000 perm   6 sec   (5146 perm/sec)   p_kst 4.351000e-01   p_cons 1.983333e-02   p_joint 7.983333e-02

Joint ci ratio: 6.541638e-02	ci left: 7.967394e-02	ci right 8.508687e-02	k: 3294	n:40000
Cons ci ratio: 1.341502e-01	ci left: 1.949632e-02	ci right 2.232383e-02	k: 835	n:40000
KS ci ratio: 2.219627e-02	ci left: 4.332299e-01	ci right 4.429791e-01	k: 17524	n:40000
FERD3L   40000 perm   8 sec   (4960 perm/sec)   p_kst 4.381000e-01   p_cons 2.087500e-02   p_joint 8.235000e-02

Joint ci ratio: 6.535582e-02	ci left: 6.492216e-02	ci right 6.932826e-02	k: 3355	n:50000
Cons ci ratio: 1.197540e-01	ci left: 1.972225e-02	ci right 2.225379e-02	k: 1048	n:50000
KS ci ratio: 1.983780e-02	ci left: 4.341244e-01	ci right 4.428428e-01	k: 21924	n:50000
FERD3L   50000 perm   10 sec   (4823 perm/sec)   p_kst 4.384800e-01   p_cons 2.096000e-02   p_joint 6.710000e-02

Joint ci ratio: 5.878380e-02	ci left: 6.696809e-02	ci right 7.104038e-02	k: 4139	n:60000
Cons ci ratio: 1.070323e-01	ci left: 2.069507e-02	ci right 2.305150e-02	k: 1311	n:60000
KS ci ratio: 1.868642e-02	ci left: 4.191423e-01	ci right 4.270651e-01	k: 25386	n:60000
FERD3L   60000 perm   13 sec   (4697 perm/sec)   p_kst 4.231000e-01   p_cons 2.185000e-02   p_joint 6.898333e-02

Joint ci ratio: 5.551121e-02	ci left: 6.465103e-02	ci right 6.835643e-02	k: 4654	n:70000
Cons ci ratio: 9.995287e-02	ci left: 2.042431e-02	ci right 2.258704e-02	k: 1504	n:70000
KS ci ratio: 1.742495e-02	ci left: 4.159405e-01	ci right 4.232662e-01	k: 29372	n:70000
FERD3L   70000 perm   15 sec   (4603 perm/sec)   p_kst 4.196000e-01   p_cons 2.148571e-02   p_joint 6.648571e-02

Outputting figure to mutsig2_images.part000000000064/FERD3L.8_505_70000_0.4196_0.021486_0.066486.png
                gene_name: FERD3L
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 16 percent done.
FGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
Cons ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
KS ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
FGA   10000 perm   2 sec   (4780 perm/sec)   p_kst 4.678000e-01   p_cons 6.334000e-01   p_joint 5.947000e-01

Outputting figure to mutsig2_images.part000000000064/FGA.9_2669_10000_0.4678_0.6334_0.5947.png
                gene_name: FGA
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 18 percent done.
FGF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
FGF14   10000 perm   2 sec   (5212 perm/sec)   p_kst 5.397000e-01   p_cons 4.040000e-02   p_joint 1.538000e-01

Joint ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
Cons ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
KS ci ratio: 2.617938e-02	ci left: 5.215530e-01	ci right 5.354387e-01	k: 10570	n:20000
FGF14   20000 perm   4 sec   (4721 perm/sec)   p_kst 5.285000e-01   p_cons 3.460000e-02   p_joint 1.340000e-01

Joint ci ratio: 5.514949e-02	ci left: 1.401439e-01	ci right 1.481251e-01	k: 4323	n:30000
Cons ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
KS ci ratio: 2.145749e-02	ci left: 5.209311e-01	ci right 5.322638e-01	k: 15798	n:30000
FGF14   30000 perm   7 sec   (4530 perm/sec)   p_kst 5.266000e-01   p_cons 3.380000e-02   p_joint 1.441000e-01

Joint ci ratio: 5.157958e-02	ci left: 1.229110e-01	ci right 1.294434e-01	k: 5046	n:40000
Cons ci ratio: 1.039196e-01	ci left: 3.256219e-02	ci right 3.615582e-02	k: 1373	n:40000
KS ci ratio: 1.854292e-02	ci left: 5.227682e-01	ci right 5.325777e-01	k: 21107	n:40000
FGF14   40000 perm   9 sec   (4389 perm/sec)   p_kst 5.276750e-01   p_cons 3.432500e-02   p_joint 1.261500e-01

Joint ci ratio: 4.365625e-02	ci left: 1.358202e-01	ci right 1.419018e-01	k: 6942	n:50000
Cons ci ratio: 9.335762e-02	ci left: 3.246768e-02	ci right 3.566671e-02	k: 1702	n:50000
KS ci ratio: 1.662454e-02	ci left: 5.221121e-01	ci right 5.308848e-01	k: 26325	n:50000
FGF14   50000 perm   12 sec   (4271 perm/sec)   p_kst 5.265000e-01   p_cons 3.404000e-02   p_joint 1.388400e-01

Outputting figure to mutsig2_images.part000000000064/FGF14.9_976_50000_0.5265_0.03404_0.13884.png
                gene_name: FGF14
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 19 percent done.
FCRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
FCRL4   10000 perm   2 sec   (4992 perm/sec)   p_kst 6.650000e-02   p_cons 1.735000e-01   p_joint 7.900000e-02

Joint ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
Cons ci ratio: 6.155181e-02	ci left: 1.633853e-01	ci right 1.738113e-01	k: 3371	n:20000
KS ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
FCRL4   20000 perm   4 sec   (4492 perm/sec)   p_kst 6.625000e-02   p_cons 1.685500e-01   p_joint 1.059500e-01

Joint ci ratio: 8.072833e-02	ci left: 6.991756e-02	ci right 7.583214e-02	k: 2185	n:30000
Cons ci ratio: 5.036492e-02	ci left: 1.637520e-01	ci right 1.722457e-01	k: 5039	n:30000
KS ci ratio: 8.522967e-02	ci left: 6.305258e-02	ci right 6.869851e-02	k: 1975	n:30000
FCRL4   30000 perm   7 sec   (4293 perm/sec)   p_kst 6.583333e-02   p_cons 1.679667e-01   p_joint 7.283333e-02

Outputting figure to mutsig2_images.part000000000064/FCRL4.8_1596_30000_0.065833_0.16797_0.072833.png
                gene_name: FCRL4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 21 percent done.
FCER1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
KS ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
FCER1A   10000 perm   2 sec   (5721 perm/sec)   p_kst 9.240000e-01   p_cons 7.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCER1A.7_794_10000_0.924_0.7715_1.png
                gene_name: FCER1A
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
FCGR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
FCGR3A   10000 perm   2 sec   (5387 perm/sec)   p_kst 7.859000e-01   p_cons 3.674000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000064/FCGR3A.7_893_10000_0.7859_0.3674_0.5772.png
                gene_name: FCGR3A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 25 percent done.
FCAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
Cons ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KS ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
FCAR   10000 perm   2 sec   (5867 perm/sec)   p_kst 9.804000e-01   p_cons 3.240000e-02   p_joint 1.712000e-01

Joint ci ratio: 5.824552e-02	ci left: 1.792442e-01	ci right 1.900476e-01	k: 3692	n:20000
Cons ci ratio: 1.511123e-01	ci left: 3.008562e-02	ci right 3.505150e-02	k: 650	n:20000
KS ci ratio: 4.122856e-03	ci left: 9.762893e-01	ci right 9.803700e-01	k: 19568	n:20000
FCAR   20000 perm   4 sec   (5242 perm/sec)   p_kst 9.784000e-01   p_cons 3.250000e-02   p_joint 1.846000e-01

Joint ci ratio: 5.182406e-02	ci left: 1.559999e-01	ci right 1.643327e-01	k: 4804	n:30000
Cons ci ratio: 1.266021e-01	ci left: 2.900300e-02	ci right 3.295519e-02	k: 928	n:30000
KS ci ratio: 3.314418e-03	ci left: 9.773482e-01	ci right 9.806247e-01	k: 29371	n:30000
FCAR   30000 perm   6 sec   (5009 perm/sec)   p_kst 9.790333e-01   p_cons 3.093333e-02   p_joint 1.601333e-01

Joint ci ratio: 4.731756e-02	ci left: 1.429737e-01	ci right 1.499277e-01	k: 5857	n:40000
Cons ci ratio: 1.092623e-01	ci left: 2.946915e-02	ci right 3.289936e-02	k: 1246	n:40000
KS ci ratio: 2.932642e-03	ci left: 9.766438e-01	ci right 9.795362e-01	k: 39125	n:40000
FCAR   40000 perm   8 sec   (4838 perm/sec)   p_kst 9.781250e-01   p_cons 3.115000e-02   p_joint 1.464250e-01

Joint ci ratio: 3.976029e-02	ci left: 1.595142e-01	ci right 1.660051e-01	k: 8137	n:50000
Cons ci ratio: 9.221455e-02	ci left: 3.326929e-02	ci right 3.650500e-02	k: 1743	n:50000
KS ci ratio: 2.610796e-03	ci left: 9.770053e-01	ci right 9.795787e-01	k: 48916	n:50000
FCAR   50000 perm   11 sec   (4711 perm/sec)   p_kst 9.783200e-01   p_cons 3.486000e-02   p_joint 1.627400e-01

Outputting figure to mutsig2_images.part000000000064/FCAR.6_955_50000_0.97832_0.03486_0.16274.png
                gene_name: FCAR
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 26 percent done.
FCGR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
Cons ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
KS ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
FCGR2A   10000 perm   2 sec   (5647 perm/sec)   p_kst 2.511000e-01   p_cons 1.274000e-01   p_joint 2.366000e-01

Joint ci ratio: 5.077371e-02	ci left: 2.237363e-01	ci right 2.354424e-01	k: 4591	n:20000
Cons ci ratio: 7.286956e-02	ci left: 1.217750e-01	ci right 1.310339e-01	k: 2527	n:20000
KS ci ratio: 4.743406e-02	ci left: 2.484743e-01	ci right 2.605971e-01	k: 5090	n:20000
FCGR2A   20000 perm   4 sec   (5031 perm/sec)   p_kst 2.545000e-01   p_cons 1.263500e-01   p_joint 2.295500e-01

Outputting figure to mutsig2_images.part000000000064/FCGR2A.6_982_20000_0.2545_0.12635_0.22955.png
                gene_name: FCGR2A
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 28 percent done.
FER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
Cons ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
KS ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
FER   10000 perm   2 sec   (4879 perm/sec)   p_kst 3.028000e-01   p_cons 2.480000e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000064/FER.6_2541_10000_0.3028_0.248_0.3649.png
                gene_name: FER
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 30 percent done.
FEZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
KS ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
FEZF1   10000 perm   2 sec   (5027 perm/sec)   p_kst 8.100000e-01   p_cons 7.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FEZF1.6_1444_10000_0.81_0.7743_1.png
                gene_name: FEZF1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
FGD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KS ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
FGD3   10000 perm   2 sec   (5047 perm/sec)   p_kst 1.092000e-01   p_cons 7.495000e-01   p_joint 1.622000e-01

Joint ci ratio: 6.342771e-02	ci left: 1.552400e-01	ci right 1.654590e-01	k: 3206	n:20000
Cons ci ratio: 1.594773e-02	ci left: 7.452480e-01	ci right 7.572788e-01	k: 15026	n:20000
KS ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
FGD3   20000 perm   4 sec   (4540 perm/sec)   p_kst 1.080000e-01   p_cons 7.513000e-01   p_joint 1.603000e-01

Outputting figure to mutsig2_images.part000000000064/FGD3.6_2242_20000_0.108_0.7513_0.1603.png
                gene_name: FGD3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 33 percent done.
FGD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
Cons ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
KS ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
FGD6   10000 perm   2 sec   (4422 perm/sec)   p_kst 5.883000e-01   p_cons 2.571000e-01   p_joint 5.059000e-01

Outputting figure to mutsig2_images.part000000000064/FGD6.6_4377_10000_0.5883_0.2571_0.5059.png
                gene_name: FGD6
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 35 percent done.
FGF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
Cons ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
FGF13   10000 perm   2 sec   (5536 perm/sec)   p_kst 8.455000e-01   p_cons 5.508000e-01   p_joint 9.323000e-01

Outputting figure to mutsig2_images.part000000000064/FGF13.6_1015_10000_0.8455_0.5508_0.9323.png
                gene_name: FGF13
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 37 percent done.
FCGR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
Cons ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
KS ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
FCGR3B   10000 perm   2 sec   (6125 perm/sec)   p_kst 7.472000e-01   p_cons 7.097000e-01   p_joint 8.405000e-01

Outputting figure to mutsig2_images.part000000000064/FCGR3B.5_722_10000_0.7472_0.7097_0.8405.png
                gene_name: FCGR3B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 39 percent done.
FCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
Cons ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
KS ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
FCN2   10000 perm   2 sec   (6075 perm/sec)   p_kst 4.556000e-01   p_cons 7.230000e-02   p_joint 1.492000e-01

Joint ci ratio: 6.003736e-02	ci left: 1.703988e-01	ci right 1.809957e-01	k: 3513	n:20000
Cons ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
KS ci ratio: 2.998455e-02	ci left: 4.538230e-01	ci right 4.676884e-01	k: 9215	n:20000
FCN2   20000 perm   4 sec   (5369 perm/sec)   p_kst 4.607500e-01   p_cons 7.570000e-02   p_joint 1.756500e-01

Outputting figure to mutsig2_images.part000000000064/FCN2.5_974_20000_0.46075_0.0757_0.17565.png
                gene_name: FCN2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 40 percent done.
FCRLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.442662e-02	ci left: 5.547144e-01	ci right 5.742480e-01	k: 5645	n:10000
Cons ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
KS ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
FCRLA   10000 perm   2 sec   (5986 perm/sec)   p_kst 4.726000e-01   p_cons 2.794000e-01   p_joint 5.645000e-01

Outputting figure to mutsig2_images.part000000000064/FCRLA.5_1173_10000_0.4726_0.2794_0.5645.png
                gene_name: FCRLA
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 42 percent done.
FGD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
Cons ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
KS ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
FGD4   10000 perm   2 sec   (5359 perm/sec)   p_kst 5.719000e-01   p_cons 9.680000e-02   p_joint 2.752000e-01

Joint ci ratio: 3.549639e-02	ci left: 3.720203e-01	ci right 3.855149e-01	k: 7575	n:20000
Cons ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
KS ci ratio: 2.400985e-02	ci left: 5.644063e-01	ci right 5.781729e-01	k: 11426	n:20000
FGD4   20000 perm   4 sec   (4758 perm/sec)   p_kst 5.713000e-01   p_cons 9.965000e-02   p_joint 3.787500e-01

Outputting figure to mutsig2_images.part000000000064/FGD4.5_2361_20000_0.5713_0.09965_0.37875.png
                gene_name: FGD4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 44 percent done.
FBXW7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
Cons ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
FBXW7   10000 perm   2 sec   (5470 perm/sec)   p_kst 2.100000e-02   p_cons 9.980000e-02   p_joint 2.490000e-02

Joint ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
Cons ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
KS ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
FBXW7   20000 perm   4 sec   (4882 perm/sec)   p_kst 2.090000e-02   p_cons 9.730000e-02   p_joint 3.930000e-02

Joint ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
Cons ci ratio: 6.772008e-02	ci left: 9.705419e-02	ci right 1.038901e-01	k: 3013	n:30000
KS ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
FBXW7   30000 perm   6 sec   (4650 perm/sec)   p_kst 2.093333e-02   p_cons 1.004333e-01   p_joint 2.686667e-02

Joint ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
Cons ci ratio: 5.841883e-02	ci left: 9.821161e-02	ci right 1.041464e-01	k: 4046	n:40000
KS ci ratio: 1.350605e-01	ci left: 1.923041e-02	ci right 2.203979e-02	k: 824	n:40000
FBXW7   40000 perm   9 sec   (4513 perm/sec)   p_kst 2.060000e-02   p_cons 1.011500e-01   p_joint 2.247500e-02

Joint ci ratio: 1.036315e-01	ci left: 2.637647e-02	ci right 2.927870e-02	k: 1390	n:50000
Cons ci ratio: 5.234796e-02	ci left: 9.819410e-02	ci right 1.034923e-01	k: 5041	n:50000
KS ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
FBXW7   50000 perm   11 sec   (4389 perm/sec)   p_kst 2.138000e-02   p_cons 1.008200e-01   p_joint 2.780000e-02

Joint ci ratio: 9.510755e-02	ci left: 2.622231e-02	ci right 2.885699e-02	k: 1651	n:60000
Cons ci ratio: 4.777997e-02	ci left: 9.845151e-02	ci right 1.032872e-01	k: 6051	n:60000
KS ci ratio: 1.086955e-01	ci left: 2.006225e-02	ci right 2.238439e-02	k: 1272	n:60000
FBXW7   60000 perm   14 sec   (4283 perm/sec)   p_kst 2.120000e-02   p_cons 1.008500e-01   p_joint 2.751667e-02

Joint ci ratio: 8.351284e-02	ci left: 2.923848e-02	ci right 3.180063e-02	k: 2135	n:70000
Cons ci ratio: 4.419973e-02	ci left: 9.877719e-02	ci right 1.032559e-01	k: 7070	n:70000
KS ci ratio: 1.003282e-01	ci left: 2.027102e-02	ci right 2.242605e-02	k: 1493	n:70000
FBXW7   70000 perm   17 sec   (4186 perm/sec)   p_kst 2.132857e-02   p_cons 1.010000e-01   p_joint 3.050000e-02

Joint ci ratio: 8.268796e-02	ci left: 2.619396e-02	ci right 2.846549e-02	k: 2185	n:80000
Cons ci ratio: 4.137683e-02	ci left: 9.878395e-02	ci right 1.029700e-01	k: 8069	n:80000
KS ci ratio: 9.462811e-02	ci left: 2.000536e-02	ci right 2.200459e-02	k: 1679	n:80000
FBXW7   80000 perm   20 sec   (4100 perm/sec)   p_kst 2.098750e-02   p_cons 1.008625e-01   p_joint 2.731250e-02

Outputting figure to mutsig2_images.part000000000064/FBXW7.4_2584_80000_0.020987_0.10086_0.027312.png
                gene_name: FBXW7
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 46 percent done.
FCHO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
KS ci ratio: 3.963549e-02	ci left: 4.845536e-01	ci right 5.042496e-01	k: 4944	n:10000
FCHO1   10000 perm   2 sec   (5470 perm/sec)   p_kst 4.944000e-01   p_cons 1.075000e-01   p_joint 2.945000e-01

Joint ci ratio: 4.467544e-02	ci left: 2.716993e-01	ci right 2.841653e-01	k: 5558	n:20000
Cons ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
KS ci ratio: 2.807074e-02	ci left: 4.866974e-01	ci right 5.006045e-01	k: 9873	n:20000
FCHO1   20000 perm   4 sec   (4817 perm/sec)   p_kst 4.936500e-01   p_cons 1.105000e-01   p_joint 2.779000e-01

Outputting figure to mutsig2_images.part000000000064/FCHO1.4_2788_20000_0.49365_0.1105_0.2779.png
                gene_name: FCHO1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
FCRL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
Cons ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
FCRL6   10000 perm   2 sec   (6243 perm/sec)   p_kst 7.350000e-02   p_cons 7.430000e-01   p_joint 1.731000e-01

Joint ci ratio: 5.994426e-02	ci left: 1.708434e-01	ci right 1.814509e-01	k: 3522	n:20000
Cons ci ratio: 1.555937e-02	ci left: 7.544218e-01	ci right 7.663024e-01	k: 15208	n:20000
KS ci ratio: 9.727235e-02	ci left: 7.143550e-02	ci right 7.878860e-02	k: 1501	n:20000
FCRL6   20000 perm   4 sec   (5502 perm/sec)   p_kst 7.505000e-02   p_cons 7.604000e-01   p_joint 1.761000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL6.4_1345_20000_0.07505_0.7604_0.1761.png
                gene_name: FCRL6
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
FGF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
FGF12   10000 perm   2 sec   (6260 perm/sec)   p_kst 3.778000e-01   p_cons 3.542000e-01   p_joint 3.926000e-01

Outputting figure to mutsig2_images.part000000000064/FGF12.4_769_10000_0.3778_0.3542_0.3926.png
                gene_name: FGF12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 51 percent done.
FGF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
Cons ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
KS ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
FGF23   10000 perm   2 sec   (5991 perm/sec)   p_kst 5.930000e-02   p_cons 1.509000e-01   p_joint 8.950000e-02

Joint ci ratio: 9.204076e-02	ci left: 7.931024e-02	ci right 8.701145e-02	k: 1662	n:20000
Cons ci ratio: 6.403515e-02	ci left: 1.527233e-01	ci right 1.628764e-01	k: 3155	n:20000
KS ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
FGF23   20000 perm   4 sec   (5310 perm/sec)   p_kst 6.210000e-02   p_cons 1.577500e-01   p_joint 8.310000e-02

Joint ci ratio: 6.258853e-02	ci left: 1.120025e-01	ci right 1.192721e-01	k: 3468	n:30000
Cons ci ratio: 5.235042e-02	ci left: 1.533286e-01	ci right 1.616045e-01	k: 4723	n:30000
KS ci ratio: 8.869151e-02	ci left: 5.841563e-02	ci right 6.386974e-02	k: 1833	n:30000
FGF23   30000 perm   6 sec   (5044 perm/sec)   p_kst 6.110000e-02   p_cons 1.574333e-01   p_joint 1.156000e-01

Outputting figure to mutsig2_images.part000000000064/FGF23.4_768_30000_0.0611_0.15743_0.1156.png
                gene_name: FGF23
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 53 percent done.
FDXACB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
Cons ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
FDXACB1   10000 perm   2 sec   (5803 perm/sec)   p_kst 1.745000e-01   p_cons 5.503000e-01   p_joint 3.352000e-01

Outputting figure to mutsig2_images.part000000000064/FDXACB1.3_1895_10000_0.1745_0.5503_0.3352.png
                gene_name: FDXACB1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 54 percent done.
FERMT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
Cons ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
KS ci ratio: 1.004086e-02	ci left: 9.336122e-01	ci right 9.431305e-01	k: 9385	n:10000
FERMT3   10000 perm   2 sec   (5850 perm/sec)   p_kst 9.385000e-01   p_cons 1.502000e-01   p_joint 6.036000e-01

Outputting figure to mutsig2_images.part000000000064/FERMT3.3_2060_10000_0.9385_0.1502_0.6036.png
                gene_name: FERMT3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 56 percent done.
FETUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
Cons ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
KS ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
FETUB   10000 perm   2 sec   (6147 perm/sec)   p_kst 8.836000e-01   p_cons 1.860000e-02   p_joint 1.330000e-01

Joint ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
Cons ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
KS ci ratio: 1.029007e-02	ci left: 8.742984e-01	ci right 8.833911e-01	k: 17578	n:20000
FETUB   20000 perm   4 sec   (5433 perm/sec)   p_kst 8.789000e-01   p_cons 2.005000e-02   p_joint 9.955000e-02

Joint ci ratio: 7.833811e-02	ci left: 7.400769e-02	ci right 8.007452e-02	k: 2310	n:30000
Cons ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
KS ci ratio: 7.796519e-03	ci left: 8.903940e-01	ci right 8.973961e-01	k: 26818	n:30000
FETUB   30000 perm   6 sec   (5149 perm/sec)   p_kst 8.939333e-01   p_cons 1.810000e-02   p_joint 7.700000e-02

Joint ci ratio: 6.507264e-02	ci left: 8.046201e-02	ci right 8.589868e-02	k: 3326	n:40000
Cons ci ratio: 1.438544e-01	ci left: 1.691258e-02	ci right 1.955802e-02	k: 728	n:40000
KS ci ratio: 6.749461e-03	ci left: 8.909421e-01	ci right 8.970006e-01	k: 35760	n:40000
FETUB   40000 perm   8 sec   (4970 perm/sec)   p_kst 8.940000e-01   p_cons 1.820000e-02   p_joint 8.315000e-02

Joint ci ratio: 4.484084e-02	ci left: 1.295991e-01	ci right 1.355636e-01	k: 6628	n:50000
Cons ci ratio: 1.293378e-01	ci left: 1.687206e-02	ci right 1.922437e-02	k: 901	n:50000
KS ci ratio: 6.030450e-03	ci left: 8.914711e-01	ci right 8.968831e-01	k: 44710	n:50000
FETUB   50000 perm   10 sec   (4817 perm/sec)   p_kst 8.942000e-01   p_cons 1.802000e-02   p_joint 1.325600e-01

Joint ci ratio: 4.770111e-02	ci left: 9.874832e-02	ci right 1.035903e-01	k: 6069	n:60000
Cons ci ratio: 1.187071e-01	ci left: 1.678941e-02	ci right 1.892426e-02	k: 1070	n:60000
KS ci ratio: 5.513212e-03	ci left: 8.914252e-01	ci right 8.963699e-01	k: 53635	n:60000
FETUB   60000 perm   13 sec   (4674 perm/sec)   p_kst 8.939167e-01   p_cons 1.783333e-02   p_joint 1.011500e-01

Joint ci ratio: 4.870062e-02	ci left: 8.264746e-02	ci right 8.678703e-02	k: 5929	n:70000
Cons ci ratio: 1.099240e-01	ci left: 1.686117e-02	ci right 1.883623e-02	k: 1248	n:70000
KS ci ratio: 5.078096e-03	ci left: 8.925902e-01	ci right 8.971485e-01	k: 62642	n:70000
FETUB   70000 perm   15 sec   (4552 perm/sec)   p_kst 8.948857e-01   p_cons 1.782857e-02   p_joint 8.470000e-02

Joint ci ratio: 5.040987e-02	ci left: 6.850075e-02	ci right 7.205549e-02	k: 5621	n:80000
Cons ci ratio: 1.020064e-01	ci left: 1.719965e-02	ci right 1.906053e-02	k: 1449	n:80000
KS ci ratio: 4.745952e-03	ci left: 8.929056e-01	ci right 8.971657e-01	k: 71604	n:80000
FETUB   80000 perm   18 sec   (4450 perm/sec)   p_kst 8.950500e-01   p_cons 1.811250e-02   p_joint 7.026250e-02

Joint ci ratio: 4.915018e-02	ci left: 6.438637e-02	ci right 6.764167e-02	k: 5940	n:90000
Cons ci ratio: 9.606026e-02	ci left: 1.729328e-02	ci right 1.904908e-02	k: 1634	n:90000
KS ci ratio: 4.461135e-03	ci left: 8.935952e-01	ci right 8.976015e-01	k: 80605	n:90000
FETUB   90000 perm   21 sec   (4359 perm/sec)   p_kst 8.956111e-01   p_cons 1.815556e-02   p_joint 6.600000e-02

Outputting figure to mutsig2_images.part000000000064/FETUB.3_1177_90000_0.89561_0.018156_0.066.png
                gene_name: FETUB
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 58 percent done.
FEZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
Cons ci ratio: 1.354428e-02	ci left: 8.871865e-01	ci right 8.993833e-01	k: 8934	n:10000
KS ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
FEZ1   10000 perm   2 sec   (6332 perm/sec)   p_kst 1.305000e-01   p_cons 8.934000e-01   p_joint 3.826000e-01

Joint ci ratio: 3.972470e-02	ci left: 3.208969e-01	ci right 3.339533e-01	k: 6548	n:20000
Cons ci ratio: 1.005918e-02	ci left: 8.791253e-01	ci right 8.880628e-01	k: 17673	n:20000
KS ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
FEZ1   20000 perm   4 sec   (5536 perm/sec)   p_kst 1.297500e-01   p_cons 8.836500e-01   p_joint 3.274000e-01

Outputting figure to mutsig2_images.part000000000064/FEZ1.3_1219_20000_0.12975_0.88365_0.3274.png
                gene_name: FEZ1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 60 percent done.
FFAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
KS ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
FFAR3   10000 perm   2 sec   (6041 perm/sec)   p_kst 6.080000e-02   p_cons 7.052000e-01   p_joint 2.516000e-01

Joint ci ratio: 5.442631e-02	ci left: 2.003140e-01	ci right 2.115716e-01	k: 4118	n:20000
Cons ci ratio: 1.768661e-02	ci left: 7.043102e-01	ci right 7.169285e-01	k: 14213	n:20000
KS ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
FFAR3   20000 perm   4 sec   (5356 perm/sec)   p_kst 6.030000e-02   p_cons 7.106500e-01   p_joint 2.059000e-01

Joint ci ratio: 5.016765e-02	ci left: 1.648409e-01	ci right 1.733566e-01	k: 5072	n:30000
Cons ci ratio: 1.432713e-02	ci left: 7.087487e-01	ci right 7.190098e-01	k: 21417	n:30000
KS ci ratio: 9.051919e-02	ci left: 5.616410e-02	ci right 6.152173e-02	k: 1764	n:30000
FFAR3   30000 perm   6 sec   (5107 perm/sec)   p_kst 5.880000e-02   p_cons 7.139000e-01   p_joint 1.690667e-01

Outputting figure to mutsig2_images.part000000000064/FFAR3.3_1045_30000_0.0588_0.7139_0.16907.png
                gene_name: FFAR3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
FGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
KS ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
FGD2   10000 perm   2 sec   (5833 perm/sec)   p_kst 8.255000e-01   p_cons 9.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FGD2.3_2032_10000_0.8255_0.9884_1.png
                gene_name: FGD2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
FBXW12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
KS ci ratio: 2.005892e-02	ci left: 7.844174e-01	ci right 8.004119e-01	k: 7925	n:10000
FBXW12   10000 perm   2 sec   (6480 perm/sec)   p_kst 7.925000e-01   p_cons 5.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW12.2_1472_10000_0.7925_0.5954_1.png
                gene_name: FBXW12
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
FBXW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
FBXW2   10000 perm   2 sec   (6077 perm/sec)   p_kst 5.388000e-01   p_cons 3.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW2.2_1389_10000_0.5388_0.382_1.png
                gene_name: FBXW2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FBXW4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KS ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
FBXW4   10000 perm   2 sec   (6449 perm/sec)   p_kst 3.860000e-02   p_cons 2.160000e-02   p_joint 9.900000e-03

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
KS ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
FBXW4   20000 perm   4 sec   (5632 perm/sec)   p_kst 4.015000e-02   p_cons 2.145000e-02   p_joint 4.950000e-03

Joint ci ratio: 4.245739e-01	ci left: 2.233986e-03	ci right 3.465435e-03	k: 84	n:30000
Cons ci ratio: 1.506624e-01	ci left: 2.040200e-02	ci right 2.375811e-02	k: 661	n:30000
KS ci ratio: 1.121940e-01	ci left: 3.690225e-02	ci right 4.132091e-02	k: 1172	n:30000
FBXW4   30000 perm   6 sec   (5286 perm/sec)   p_kst 3.906667e-02   p_cons 2.203333e-02   p_joint 2.800000e-03

Joint ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
Cons ci ratio: 1.309083e-01	ci left: 2.048801e-02	ci right 2.338197e-02	k: 876	n:40000
KS ci ratio: 9.674552e-02	ci left: 3.751450e-02	ci right 4.135273e-02	k: 1576	n:40000
FBXW4   40000 perm   8 sec   (5114 perm/sec)   p_kst 3.940000e-02   p_cons 2.190000e-02   p_joint 2.925000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 1.173759e-01	ci left: 2.053783e-02	ci right 2.311810e-02	k: 1090	n:50000
KS ci ratio: 8.681322e-02	ci left: 3.747656e-02	ci right 4.089720e-02	k: 1958	n:50000
FBXW4   50000 perm   10 sec   (4975 perm/sec)   p_kst 3.916000e-02   p_cons 2.180000e-02   p_joint 2.180000e-03

Joint ci ratio: 2.854448e-01	ci left: 2.686511e-03	ci right 3.595935e-03	k: 187	n:60000
Cons ci ratio: 1.075361e-01	ci left: 2.050032e-02	ci right 2.284626e-02	k: 1299	n:60000
KS ci ratio: 7.869016e-02	ci left: 3.815164e-02	ci right 4.129308e-02	k: 2382	n:60000
FBXW4   60000 perm   12 sec   (4866 perm/sec)   p_kst 3.970000e-02   p_cons 2.165000e-02   p_joint 3.116667e-03

Joint ci ratio: 2.609111e-01	ci left: 2.795179e-03	ci right 3.646824e-03	k: 224	n:70000
Cons ci ratio: 9.904864e-02	ci left: 2.080062e-02	ci right 2.298212e-02	k: 1531	n:70000
KS ci ratio: 7.285528e-02	ci left: 3.826553e-02	ci right 4.117278e-02	k: 2779	n:70000
FBXW4   70000 perm   15 sec   (4755 perm/sec)   p_kst 3.970000e-02   p_cons 2.187143e-02   p_joint 3.200000e-03

Joint ci ratio: 2.427112e-01	ci left: 2.855715e-03	ci right 3.655979e-03	k: 259	n:80000
Cons ci ratio: 9.227131e-02	ci left: 2.104354e-02	ci right 2.309133e-02	k: 1764	n:80000
KS ci ratio: 6.845501e-02	ci left: 3.802549e-02	ci right 4.073304e-02	k: 3149	n:80000
FBXW4   80000 perm   17 sec   (4654 perm/sec)   p_kst 3.936250e-02   p_cons 2.205000e-02   p_joint 3.237500e-03

Joint ci ratio: 2.255657e-01	ci left: 2.967298e-03	ci right 3.731933e-03	k: 300	n:90000
Cons ci ratio: 8.647522e-02	ci left: 2.135606e-02	ci right 2.329712e-02	k: 2008	n:90000
KS ci ratio: 6.437711e-02	ci left: 3.829145e-02	ci right 4.084944e-02	k: 3560	n:90000
FBXW4   90000 perm   20 sec   (4555 perm/sec)   p_kst 3.955556e-02   p_cons 2.231111e-02   p_joint 3.333333e-03

Joint ci ratio: 2.151047e-01	ci left: 2.954016e-03	ci right 3.675268e-03	k: 330	n:100000
Cons ci ratio: 8.211711e-02	ci left: 2.136430e-02	ci right 2.320355e-02	k: 2227	n:100000
KS ci ratio: 6.108692e-02	ci left: 3.834054e-02	ci right 4.076626e-02	k: 3954	n:100000
FBXW4   100000 perm   22 sec   (4462 perm/sec)   p_kst 3.954000e-02   p_cons 2.227000e-02   p_joint 3.300000e-03

Joint ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
Cons ci ratio: 7.845621e-02	ci left: 2.131957e-02	ci right 2.306939e-02	k: 2440	n:110000
KS ci ratio: 5.829645e-02	ci left: 3.832966e-02	ci right 4.064016e-02	k: 4342	n:110000
FBXW4   110000 perm   25 sec   (4373 perm/sec)   p_kst 3.947273e-02   p_cons 2.218182e-02   p_joint 3.281818e-03

Joint ci ratio: 1.961649e-01	ci left: 2.991326e-03	ci right 3.649705e-03	k: 397	n:120000
Cons ci ratio: 7.502842e-02	ci left: 2.140651e-02	ci right 2.308335e-02	k: 2668	n:120000
KS ci ratio: 5.582578e-02	ci left: 3.836381e-02	ci right 4.057519e-02	k: 4735	n:120000
FBXW4   120000 perm   28 sec   (4289 perm/sec)   p_kst 3.945833e-02   p_cons 2.223333e-02   p_joint 3.308333e-03

Joint ci ratio: 1.880685e-01	ci left: 3.017513e-03	ci right 3.651114e-03	k: 432	n:130000
Cons ci ratio: 7.212860e-02	ci left: 2.141348e-02	ci right 2.302331e-02	k: 2887	n:130000
KS ci ratio: 5.361756e-02	ci left: 3.843243e-02	ci right 4.055741e-02	k: 5133	n:130000
FBXW4   130000 perm   31 sec   (4205 perm/sec)   p_kst 3.948462e-02   p_cons 2.220769e-02   p_joint 3.323077e-03

Joint ci ratio: 1.808983e-01	ci left: 3.040437e-03	ci right 3.651847e-03	k: 467	n:140000
Cons ci ratio: 6.943816e-02	ci left: 2.148372e-02	ci right 2.303615e-02	k: 3115	n:140000
KS ci ratio: 5.161823e-02	ci left: 3.854210e-02	ci right 4.059131e-02	k: 5538	n:140000
FBXW4   140000 perm   34 sec   (4126 perm/sec)   p_kst 3.955714e-02   p_cons 2.225000e-02   p_joint 3.335714e-03

Joint ci ratio: 1.741432e-01	ci left: 3.073455e-03	ci right 3.665998e-03	k: 504	n:150000
Cons ci ratio: 6.698697e-02	ci left: 2.157179e-02	ci right 2.307342e-02	k: 3347	n:150000
KS ci ratio: 4.994970e-02	ci left: 3.845400e-02	ci right 4.043052e-02	k: 5915	n:150000
FBXW4   150000 perm   37 sec   (4052 perm/sec)   p_kst 3.943333e-02   p_cons 2.231333e-02   p_joint 3.360000e-03

Joint ci ratio: 1.667093e-01	ci left: 3.156617e-03	ci right 3.736607e-03	k: 550	n:160000
Cons ci ratio: 6.475053e-02	ci left: 2.166815e-02	ci right 2.312423e-02	k: 3582	n:160000
KS ci ratio: 4.841714e-02	ci left: 3.840256e-02	ci right 4.031418e-02	k: 6296	n:160000
FBXW4   160000 perm   40 sec   (3982 perm/sec)   p_kst 3.935000e-02   p_cons 2.238750e-02   p_joint 3.437500e-03

Joint ci ratio: 1.629141e-01	ci left: 3.117561e-03	ci right 3.676057e-03	k: 576	n:170000
Cons ci ratio: 6.295218e-02	ci left: 2.159752e-02	ci right 2.300708e-02	k: 3790	n:170000
KS ci ratio: 4.683168e-02	ci left: 3.865461e-02	ci right 4.051407e-02	k: 6728	n:170000
FBXW4   170000 perm   43 sec   (3916 perm/sec)   p_kst 3.957647e-02   p_cons 2.229412e-02   p_joint 3.388235e-03

Joint ci ratio: 1.572865e-01	ci left: 3.168357e-03	ci right 3.714496e-03	k: 618	n:180000
Cons ci ratio: 6.105419e-02	ci left: 2.170488e-02	ci right 2.307723e-02	k: 4029	n:180000
KS ci ratio: 4.547177e-02	ci left: 3.874768e-02	ci right 4.055607e-02	k: 7136	n:180000
FBXW4   180000 perm   47 sec   (3849 perm/sec)   p_kst 3.964444e-02   p_cons 2.238333e-02   p_joint 3.433333e-03

Joint ci ratio: 1.532550e-01	ci left: 3.168537e-03	ci right 3.699423e-03	k: 651	n:190000
Cons ci ratio: 5.943929e-02	ci left: 2.171334e-02	ci right 2.304866e-02	k: 4251	n:190000
KS ci ratio: 4.418422e-02	ci left: 3.889935e-02	ci right 4.066210e-02	k: 7557	n:190000
FBXW4   190000 perm   50 sec   (3782 perm/sec)   p_kst 3.977368e-02   p_cons 2.237368e-02   p_joint 3.426316e-03

Joint ci ratio: 1.490823e-01	ci left: 3.188116e-03	ci right 3.706441e-03	k: 688	n:200000
Cons ci ratio: 5.810573e-02	ci left: 2.160309e-02	ci right 2.290081e-02	k: 4449	n:200000
KS ci ratio: 4.306204e-02	ci left: 3.892763e-02	ci right 4.064574e-02	k: 7956	n:200000
FBXW4   200000 perm   54 sec   (3720 perm/sec)   p_kst 3.978000e-02   p_cons 2.224500e-02   p_joint 3.440000e-03

Joint ci ratio: 1.457373e-01	ci left: 3.183061e-03	ci right 3.687942e-03	k: 720	n:210000
Cons ci ratio: 5.659708e-02	ci left: 2.170087e-02	ci right 2.296951e-02	k: 4689	n:210000
KS ci ratio: 4.199508e-02	ci left: 3.900087e-02	ci right 4.067853e-02	k: 8365	n:210000
FBXW4   210000 perm   57 sec   (3660 perm/sec)   p_kst 3.983333e-02   p_cons 2.232857e-02   p_joint 3.428571e-03

Joint ci ratio: 1.434706e-01	ci left: 3.139134e-03	ci right 3.628640e-03	k: 743	n:220000
Cons ci ratio: 5.539008e-02	ci left: 2.164218e-02	ci right 2.287954e-02	k: 4896	n:220000
KS ci ratio: 4.110871e-02	ci left: 3.887440e-02	ci right 4.051049e-02	k: 8731	n:220000
FBXW4   220000 perm   61 sec   (3604 perm/sec)   p_kst 3.968636e-02   p_cons 2.225455e-02   p_joint 3.377273e-03

Joint ci ratio: 1.402102e-01	ci left: 3.149425e-03	ci right 3.628442e-03	k: 778	n:230000
Cons ci ratio: 5.420285e-02	ci left: 2.163176e-02	ci right 2.284119e-02	k: 5113	n:230000
KS ci ratio: 4.022326e-02	ci left: 3.885830e-02	ci right 4.045767e-02	k: 9120	n:230000
FBXW4   230000 perm   65 sec   (3547 perm/sec)   p_kst 3.965217e-02   p_cons 2.223043e-02   p_joint 3.382609e-03

Joint ci ratio: 1.373318e-01	ci left: 3.150925e-03	ci right 3.619528e-03	k: 811	n:240000
Cons ci ratio: 5.304305e-02	ci left: 2.165948e-02	ci right 2.284376e-02	k: 5339	n:240000
KS ci ratio: 3.930667e-02	ci left: 3.900899e-02	ci right 4.057715e-02	k: 9549	n:240000
FBXW4   240000 perm   69 sec   (3491 perm/sec)   p_kst 3.978750e-02   p_cons 2.224583e-02   p_joint 3.379167e-03

Joint ci ratio: 1.347037e-01	ci left: 3.148532e-03	ci right 3.607100e-03	k: 843	n:250000
Cons ci ratio: 5.203599e-02	ci left: 2.161811e-02	ci right 2.277700e-02	k: 5548	n:250000
KS ci ratio: 3.849020e-02	ci left: 3.906874e-02	ci right 4.060595e-02	k: 9958	n:250000
FBXW4   250000 perm   73 sec   (3438 perm/sec)   p_kst 3.983200e-02   p_cons 2.219200e-02   p_joint 3.372000e-03

Joint ci ratio: 1.319944e-01	ci left: 3.157561e-03	ci right 3.607468e-03	k: 878	n:260000
Cons ci ratio: 5.112051e-02	ci left: 2.154973e-02	ci right 2.268404e-02	k: 5749	n:260000
KS ci ratio: 3.774153e-02	ci left: 3.908609e-02	ci right 4.059342e-02	k: 10357	n:260000
FBXW4   260000 perm   77 sec   (3387 perm/sec)   p_kst 3.983462e-02   p_cons 2.211154e-02   p_joint 3.376923e-03

Joint ci ratio: 1.303033e-01	ci left: 3.123000e-03	ci right 3.561841e-03	k: 901	n:270000
Cons ci ratio: 5.014839e-02	ci left: 2.157438e-02	ci right 2.268776e-02	k: 5974	n:270000
KS ci ratio: 3.705645e-02	ci left: 3.905837e-02	ci right 4.053671e-02	k: 10744	n:270000
FBXW4   270000 perm   81 sec   (3339 perm/sec)   p_kst 3.979259e-02   p_cons 2.212593e-02   p_joint 3.337037e-03

Joint ci ratio: 1.284667e-01	ci left: 3.101314e-03	ci right 3.530497e-03	k: 927	n:280000
Cons ci ratio: 4.928256e-02	ci left: 2.155159e-02	ci right 2.264405e-02	k: 6186	n:280000
KS ci ratio: 3.644318e-02	ci left: 3.895852e-02	ci right 4.040817e-02	k: 11110	n:280000
FBXW4   280000 perm   85 sec   (3291 perm/sec)   p_kst 3.967857e-02   p_cons 2.209286e-02   p_joint 3.310714e-03

Joint ci ratio: 1.265725e-01	ci left: 3.087842e-03	ci right 3.508387e-03	k: 955	n:290000
Cons ci ratio: 4.844847e-02	ci left: 2.154075e-02	ci right 2.261366e-02	k: 6401	n:290000
KS ci ratio: 3.579286e-02	ci left: 3.900592e-02	ci right 4.043089e-02	k: 11517	n:290000
FBXW4   290000 perm   89 sec   (3243 perm/sec)   p_kst 3.971379e-02   p_cons 2.207241e-02   p_joint 3.293103e-03

Joint ci ratio: 1.249510e-01	ci left: 3.065624e-03	ci right 3.477398e-03	k: 980	n:300000
Cons ci ratio: 4.765535e-02	ci left: 2.153078e-02	ci right 2.258515e-02	k: 6616	n:300000
KS ci ratio: 3.518384e-02	ci left: 3.903384e-02	ci right 4.043507e-02	k: 11919	n:300000
FBXW4   300000 perm   94 sec   (3199 perm/sec)   p_kst 3.973000e-02   p_cons 2.205333e-02   p_joint 3.266667e-03

Joint ci ratio: 1.230226e-01	ci left: 3.063631e-03	ci right 3.468324e-03	k: 1011	n:310000
Cons ci ratio: 4.686839e-02	ci left: 2.155028e-02	ci right 2.258771e-02	k: 6840	n:310000
KS ci ratio: 3.460049e-02	ci left: 3.906974e-02	ci right 4.044855e-02	k: 12324	n:310000
FBXW4   310000 perm   98 sec   (3155 perm/sec)   p_kst 3.975484e-02   p_cons 2.206452e-02   p_joint 3.261290e-03

Joint ci ratio: 1.213562e-01	ci left: 3.052717e-03	ci right 3.450113e-03	k: 1039	n:320000
Cons ci ratio: 4.615592e-02	ci left: 2.153471e-02	ci right 2.255522e-02	k: 7053	n:320000
KS ci ratio: 3.412488e-02	ci left: 3.892692e-02	ci right 4.028143e-02	k: 12672	n:320000
FBXW4   320000 perm   103 sec   (3112 perm/sec)   p_kst 3.960000e-02   p_cons 2.204063e-02   p_joint 3.246875e-03

Joint ci ratio: 1.196433e-01	ci left: 3.048379e-03	ci right 3.439213e-03	k: 1069	n:330000
Cons ci ratio: 4.548779e-02	ci left: 2.150822e-02	ci right 2.251232e-02	k: 7262	n:330000
KS ci ratio: 3.362936e-02	ci left: 3.888005e-02	ci right 4.021290e-02	k: 13049	n:330000
FBXW4   330000 perm   107 sec   (3071 perm/sec)   p_kst 3.954242e-02   p_cons 2.200606e-02   p_joint 3.239394e-03

Joint ci ratio: 1.183794e-01	ci left: 3.024352e-03	ci right 3.407722e-03	k: 1092	n:340000
Cons ci ratio: 4.482333e-02	ci left: 2.150665e-02	ci right 2.249564e-02	k: 7479	n:340000
KS ci ratio: 3.316897e-02	ci left: 3.880397e-02	ci right 4.011566e-02	k: 13415	n:340000
FBXW4   340000 perm   112 sec   (3031 perm/sec)   p_kst 3.945588e-02   p_cons 2.199706e-02   p_joint 3.211765e-03

Joint ci ratio: 1.166317e-01	ci left: 3.029456e-03	ci right 3.407414e-03	k: 1125	n:350000
Cons ci ratio: 4.419890e-02	ci left: 2.149397e-02	ci right 2.246825e-02	k: 7692	n:350000
KS ci ratio: 3.264446e-02	ci left: 3.892229e-02	ci right 4.021678e-02	k: 13848	n:350000
FBXW4   350000 perm   117 sec   (2993 perm/sec)   p_kst 3.956571e-02   p_cons 2.197714e-02   p_joint 3.214286e-03

Joint ci ratio: 1.146618e-01	ci left: 3.050506e-03	ci right 3.424227e-03	k: 1164	n:360000
Cons ci ratio: 4.355482e-02	ci left: 2.152605e-02	ci right 2.248722e-02	k: 7921	n:360000
KS ci ratio: 3.222049e-02	ci left: 3.885502e-02	ci right 4.013018e-02	k: 14216	n:360000
FBXW4   360000 perm   122 sec   (2954 perm/sec)   p_kst 3.948889e-02   p_cons 2.200278e-02   p_joint 3.233333e-03

Joint ci ratio: 1.133089e-01	ci left: 3.041577e-03	ci right 3.409514e-03	k: 1192	n:370000
Cons ci ratio: 4.294888e-02	ci left: 2.154580e-02	ci right 2.249414e-02	k: 8146	n:370000
KS ci ratio: 3.178879e-02	ci left: 3.884782e-02	ci right 4.010535e-02	k: 14605	n:370000
FBXW4   370000 perm   127 sec   (2918 perm/sec)   p_kst 3.947297e-02   p_cons 2.201622e-02   p_joint 3.221622e-03

Joint ci ratio: 1.115000e-01	ci left: 3.061284e-03	ci right 3.425304e-03	k: 1231	n:380000
Cons ci ratio: 4.231332e-02	ci left: 2.161929e-02	ci right 2.255644e-02	k: 8392	n:380000
KS ci ratio: 3.141000e-02	ci left: 3.875492e-02	ci right 3.999422e-02	k: 14961	n:380000
FBXW4   380000 perm   132 sec   (2881 perm/sec)   p_kst 3.937105e-02   p_cons 2.208421e-02   p_joint 3.239474e-03

Joint ci ratio: 1.100797e-01	ci left: 3.062567e-03	ci right 3.421799e-03	k: 1263	n:390000
Cons ci ratio: 4.182661e-02	ci left: 2.156475e-02	ci right 2.248852e-02	k: 8589	n:390000
KS ci ratio: 3.099496e-02	ci left: 3.878648e-02	ci right 4.001012e-02	k: 15364	n:390000
FBXW4   390000 perm   137 sec   (2846 perm/sec)   p_kst 3.939487e-02   p_cons 2.202308e-02   p_joint 3.238462e-03

Joint ci ratio: 1.082523e-01	ci left: 3.090570e-03	ci right 3.446686e-03	k: 1306	n:400000
Cons ci ratio: 4.126040e-02	ci left: 2.161199e-02	ci right 2.252495e-02	k: 8826	n:400000
KS ci ratio: 3.061719e-02	ci left: 3.876446e-02	ci right 3.997223e-02	k: 15746	n:400000
FBXW4   400000 perm   142 sec   (2812 perm/sec)   p_kst 3.936500e-02   p_cons 2.206500e-02   p_joint 3.265000e-03

Joint ci ratio: 1.067911e-01	ci left: 3.100635e-03	ci right 3.452785e-03	k: 1342	n:410000
Cons ci ratio: 4.070968e-02	ci left: 2.166425e-02	ci right 2.256691e-02	k: 9066	n:410000
KS ci ratio: 3.022170e-02	ci left: 3.882107e-02	ci right 4.001471e-02	k: 16160	n:410000
FBXW4   410000 perm   148 sec   (2779 perm/sec)   p_kst 3.941463e-02   p_cons 2.211220e-02   p_joint 3.273171e-03

Joint ci ratio: 1.056569e-01	ci left: 3.094023e-03	ci right 3.441458e-03	k: 1371	n:420000
Cons ci ratio: 4.024018e-02	ci left: 2.165044e-02	ci right 2.254189e-02	k: 9279	n:420000
KS ci ratio: 2.984490e-02	ci left: 3.886563e-02	ci right 4.004549e-02	k: 16570	n:420000
FBXW4   420000 perm   153 sec   (2745 perm/sec)   p_kst 3.945238e-02   p_cons 2.209286e-02   p_joint 3.264286e-03

Joint ci ratio: 1.043342e-01	ci left: 3.101327e-03	ci right 3.444955e-03	k: 1406	n:430000
Cons ci ratio: 3.978440e-02	ci left: 2.163963e-02	ci right 2.252031e-02	k: 9493	n:430000
KS ci ratio: 2.949542e-02	ci left: 3.887357e-02	ci right 4.003962e-02	k: 16965	n:430000
FBXW4   430000 perm   158 sec   (2714 perm/sec)   p_kst 3.945349e-02   p_cons 2.207674e-02   p_joint 3.269767e-03

Joint ci ratio: 1.030242e-01	ci left: 3.110540e-03	ci right 3.450599e-03	k: 1442	n:440000
Cons ci ratio: 3.930033e-02	ci left: 2.167664e-02	ci right 2.254785e-02	k: 9728	n:440000
KS ci ratio: 2.916668e-02	ci left: 3.885866e-02	ci right 4.001105e-02	k: 17350	n:440000
FBXW4   440000 perm   164 sec   (2682 perm/sec)   p_kst 3.943182e-02   p_cons 2.210909e-02   p_joint 3.277273e-03

Joint ci ratio: 1.017277e-01	ci left: 3.121534e-03	ci right 3.458245e-03	k: 1479	n:450000
Cons ci ratio: 3.889543e-02	ci left: 2.164383e-02	ci right 2.250456e-02	k: 9932	n:450000
KS ci ratio: 2.885716e-02	ci left: 3.882241e-02	ci right 3.996131e-02	k: 17725	n:450000
FBXW4   450000 perm   170 sec   (2652 perm/sec)   p_kst 3.938889e-02   p_cons 2.207111e-02   p_joint 3.286667e-03

Joint ci ratio: 1.006790e-01	ci left: 3.119360e-03	ci right 3.452162e-03	k: 1510	n:460000
Cons ci ratio: 3.846787e-02	ci left: 2.165126e-02	ci right 2.250260e-02	k: 10154	n:460000
KS ci ratio: 2.855236e-02	ci left: 3.880076e-02	ci right 3.992679e-02	k: 18106	n:460000
FBXW4   460000 perm   175 sec   (2624 perm/sec)   p_kst 3.936087e-02   p_cons 2.207391e-02   p_joint 3.282609e-03

Joint ci ratio: 9.953261e-02	ci left: 3.125595e-03	ci right 3.455043e-03	k: 1545	n:470000
Cons ci ratio: 3.806725e-02	ci left: 2.164366e-02	ci right 2.248565e-02	k: 10369	n:470000
KS ci ratio: 2.824351e-02	ci left: 3.881601e-02	ci right 3.993011e-02	k: 18504	n:470000
FBXW4   470000 perm   182 sec   (2589 perm/sec)   p_kst 3.937021e-02   p_cons 2.206170e-02   p_joint 3.287234e-03

Outputting figure to mutsig2_images.part000000000064/FBXW4.2_1275_470000_0.03937_0.022062_0.0032872.png
                gene_name: FBXW4
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0035 

Current progress: 68 percent done.
FBXW8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
Cons ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
KS ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
FBXW8   10000 perm   2 sec   (5139 perm/sec)   p_kst 2.173000e-01   p_cons 2.042000e-01   p_joint 2.566000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW8.2_1841_10000_0.2173_0.2042_0.2566.png
                gene_name: FBXW8
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 70 percent done.
FCER1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
Cons ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
KS ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
FCER1G   10000 perm   1 sec   (7275 perm/sec)   p_kst 7.024000e-01   p_cons 3.601000e-01   p_joint 8.423000e-01

Outputting figure to mutsig2_images.part000000000064/FCER1G.2_281_10000_0.7024_0.3601_0.8423.png
                gene_name: FCER1G
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 72 percent done.
FCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
Cons ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
FCF1   10000 perm   1 sec   (6976 perm/sec)   p_kst 4.264000e-01   p_cons 9.464000e-01   p_joint 8.972000e-01

Outputting figure to mutsig2_images.part000000000064/FCF1.2_629_10000_0.4264_0.9464_0.8972.png
                gene_name: FCF1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 74 percent done.
FCGR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 1.900490e-02	ci left: 8.018666e-01	ci right 8.173526e-01	k: 8097	n:10000
FCGR2B   10000 perm   2 sec   (6066 perm/sec)   p_kst 8.097000e-01   p_cons 3.900000e-02   p_joint 9.770000e-02

Joint ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
Cons ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
KS ci ratio: 1.335525e-02	ci left: 8.061105e-01	ci right 8.169987e-01	k: 16232	n:20000
FCGR2B   20000 perm   4 sec   (5601 perm/sec)   p_kst 8.116000e-01   p_cons 3.940000e-02   p_joint 1.275500e-01

Joint ci ratio: 5.957906e-02	ci left: 1.223303e-01	ci right 1.298756e-01	k: 3782	n:30000
Cons ci ratio: 1.099219e-01	ci left: 3.842706e-02	ci right 4.292912e-02	k: 1219	n:30000
KS ci ratio: 1.087827e-02	ci left: 8.078683e-01	ci right 8.167378e-01	k: 24370	n:30000
FCGR2B   30000 perm   6 sec   (5261 perm/sec)   p_kst 8.123333e-01   p_cons 4.063333e-02   p_joint 1.260667e-01

Joint ci ratio: 5.148041e-02	ci left: 1.233313e-01	ci right 1.298730e-01	k: 5063	n:40000
Cons ci ratio: 9.449130e-02	ci left: 3.929756e-02	ci right 4.321939e-02	k: 1649	n:40000
KS ci ratio: 9.413348e-03	ci left: 8.087155e-01	ci right 8.163891e-01	k: 32503	n:40000
FCGR2B   40000 perm   8 sec   (4985 perm/sec)   p_kst 8.125750e-01   p_cons 4.122500e-02   p_joint 1.265750e-01

Outputting figure to mutsig2_images.part000000000064/FCGR2B.2_965_40000_0.81258_0.041225_0.12657.png
                gene_name: FCGR2B
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 75 percent done.
FCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
Cons ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
FCN1   10000 perm   2 sec   (5837 perm/sec)   p_kst 6.256000e-01   p_cons 5.825000e-01   p_joint 8.880000e-01

Outputting figure to mutsig2_images.part000000000064/FCN1.2_1017_10000_0.6256_0.5825_0.888.png
                gene_name: FCN1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 77 percent done.
FCRLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
KS ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
FCRLB   10000 perm   2 sec   (6554 perm/sec)   p_kst 1.226000e-01   p_cons 7.235000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.716739e-02	ci left: 7.164891e-01	ci right 7.289461e-01	k: 14455	n:20000
KS ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
FCRLB   20000 perm   4 sec   (5679 perm/sec)   p_kst 1.219000e-01   p_cons 7.227500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCRLB.2_1305_20000_0.1219_0.72275_1.png
                gene_name: FCRLB
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
FDFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
KS ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
FDFT1   10000 perm   2 sec   (6359 perm/sec)   p_kst 2.715000e-01   p_cons 4.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FDFT1.2_1286_10000_0.2715_0.458_1.png
                gene_name: FDFT1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
FDX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
Cons ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
KS ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
FDX1   10000 perm   1 sec   (7073 perm/sec)   p_kst 2.191000e-01   p_cons 9.852000e-01   p_joint 4.507000e-01

Outputting figure to mutsig2_images.part000000000064/FDX1.2_571_10000_0.2191_0.9852_0.4507.png
                gene_name: FDX1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 82 percent done.
FDX1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.371559e-02	ci left: 3.380633e-01	ci right 3.568256e-01	k: 3474	n:10000
Cons ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
FDX1L   10000 perm   1 sec   (6998 perm/sec)   p_kst 6.810000e-02   p_cons 2.928000e-01   p_joint 3.474000e-01

Joint ci ratio: 1.803980e-02	ci left: 6.960598e-01	ci right 7.087813e-01	k: 14049	n:20000
Cons ci ratio: 4.299486e-02	ci left: 2.872441e-01	ci right 2.999159e-01	k: 5871	n:20000
KS ci ratio: 1.016569e-01	ci left: 6.567166e-02	ci right 7.275421e-02	k: 1383	n:20000
FDX1L   20000 perm   3 sec   (6103 perm/sec)   p_kst 6.915000e-02   p_cons 2.935500e-01   p_joint 7.024500e-01

Joint ci ratio: 2.990832e-03	ci left: 9.813339e-01	ci right 9.843049e-01	k: 29486	n:30000
Cons ci ratio: 3.522973e-02	ci left: 2.869580e-01	ci right 2.972823e-01	k: 8763	n:30000
KS ci ratio: 8.167935e-02	ci left: 6.838039e-02	ci right 7.423629e-02	k: 2138	n:30000
FDX1L   30000 perm   5 sec   (5758 perm/sec)   p_kst 7.126667e-02   p_cons 2.921000e-01   p_joint 9.828667e-01

Outputting figure to mutsig2_images.part000000000064/FDX1L.2_572_30000_0.071267_0.2921_0.98287.png
                gene_name: FDX1L
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 84 percent done.
FDXR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
KS ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
FDXR   10000 perm   1 sec   (6673 perm/sec)   p_kst 8.456000e-01   p_cons 7.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FDXR.2_1542_10000_0.8456_0.7557_1.png
                gene_name: FDXR
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FECH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
FECH   10000 perm   1 sec   (6831 perm/sec)   p_kst 8.759000e-01   p_cons 7.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FECH.2_1334_10000_0.8759_0.7897_1.png
                gene_name: FECH
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
FEM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
KS ci ratio: 6.651539e-03	ci left: 9.686815e-01	ci right 9.752397e-01	k: 9721	n:10000
FEM1B   10000 perm   2 sec   (6096 perm/sec)   p_kst 9.721000e-01   p_cons 1.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FEM1B.2_1892_10000_0.9721_0.156_1.png
                gene_name: FEM1B
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
FFAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.326536e-02	ci left: 7.307786e-01	ci right 7.480817e-01	k: 7395	n:10000
KS ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
FFAR1   10000 perm   1 sec   (6768 perm/sec)   p_kst 2.243000e-01   p_cons 7.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FFAR1.2_907_10000_0.2243_0.7395_1.png
                gene_name: FFAR1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
FFAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
FFAR2   10000 perm   1 sec   (7029 perm/sec)   p_kst 1.070000e-01   p_cons 6.940000e-02   p_joint 6.940000e-02

Joint ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
Cons ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
KS ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
FFAR2   20000 perm   3 sec   (6109 perm/sec)   p_kst 1.118000e-01   p_cons 7.470000e-02   p_joint 2.425000e-02

Joint ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
Cons ci ratio: 7.919529e-02	ci left: 7.250221e-02	ci right 7.851364e-02	k: 2264	n:30000
KS ci ratio: 6.369411e-02	ci left: 1.085181e-01	ci right 1.156905e-01	k: 3362	n:30000
FFAR2   30000 perm   5 sec   (5756 perm/sec)   p_kst 1.120667e-01   p_cons 7.546667e-02   p_joint 6.833333e-02

Outputting figure to mutsig2_images.part000000000064/FFAR2.2_997_30000_0.11207_0.075467_0.068333.png
                gene_name: FFAR2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 93 percent done.
FGD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
KS ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
FGD1   10000 perm   2 sec   (5759 perm/sec)   p_kst 9.218000e-01   p_cons 7.654000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FGD1.2_2958_10000_0.9218_0.7654_1.png
                gene_name: FGD1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
FGF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.733497e-02	ci left: 6.635047e-01	ci right 6.819946e-01	k: 6728	n:10000
Cons ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
KS ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
FGF10   10000 perm   1 sec   (6913 perm/sec)   p_kst 4.833000e-01   p_cons 7.520000e-01   p_joint 6.728000e-01

Outputting figure to mutsig2_images.part000000000064/FGF10.2_639_10000_0.4833_0.752_0.6728.png
                gene_name: FGF10
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 96 percent done.
FGF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
FGF19   10000 perm   1 sec   (7328 perm/sec)   p_kst 4.410000e-01   p_cons 1.582000e-01   p_joint 3.959000e-01

Outputting figure to mutsig2_images.part000000000064/FGF19.2_663_10000_0.441_0.1582_0.3959.png
                gene_name: FGF19
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 98 percent done.
FGF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
FGF21   10000 perm   1 sec   (6888 perm/sec)   p_kst 1.763000e-01   p_cons 5.155000e-01   p_joint 2.762000e-01

Outputting figure to mutsig2_images.part000000000064/FGF21.2_642_10000_0.1763_0.5155_0.2762.png
                gene_name: FGF21
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000064
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 64 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1528>
Subject: Job 4421957: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1528>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000065> was used as the working directory.
Started at Wed Oct 24 17:45:52 2012
Results reported at Wed Oct 24 18:08:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000065.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000065.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 65  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000065.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1576.57 sec.
    Max Memory :      5349 MB
    Max Swap   :      7789 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
65
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 65
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 65: processing genes 5791 - 5881
Calculating significance of each gene.
Using projection method.
5791	FGF4	6.191196e-02
5792	FGF5	4.256017e-01
5793	FGF6	1
5794	FGF7	1
5795	FGF8	1
5796	FGF9	4.763198e-01
5797	FGFBP1	2.513816e-01
5798	FGFBP2	1.215499e-01
5799	FGFBP3	1
5800	FGFR1	9.746109e-01
5801	FGFR1OP	3.134486e-01
5802	FGFR1OP2	1
5803	FGFR2	3.433373e-01
5804	FGFR3	9.674026e-01
5805	FGFR4	8.951627e-01
5806	FGFRL1	6.633810e-01
5807	FGG	9.236803e-01
5808	FGGY	9.334603e-01
5809	FGL1	5.859780e-01
5810	FGL2	1
5811	FGR	1
5812	FH	3.581079e-02
5813	FHDC1	8.412465e-01
5814	FHIT	4.738762e-01
5815	FHL1	8.989051e-01
5816	FHL2	1
5817	FHL3	7.574073e-01
5818	FHL5	3.507635e-01
5819	FHOD1	9.885763e-01
5820	FHOD3	9.480790e-01
5821	FIBCD1	4.945141e-01
5822	FIBIN	1
5823	FIBP	3.660634e-01
5824	FICD	1
5825	FIG4	2.667694e-01
5826	FIGF	8.794843e-01
5827	FIGLA	1
5828	FIGN	5.589647e-01
5829	FIGNL1	1.789244e-01
5830	FILIP1	9.809822e-01
5831	FILIP1L	9.953683e-01
5832	FIP1L1	4.767483e-01
5833	FIS1	1
5834	FITM1	4.966693e-01
5835	FITM2	1
5836	FIZ1	4.225179e-02
5837	FJX1	5.792190e-01
5838	FKBP10	1
5839	FKBP11	3.187729e-01
5840	FKBP14	1
5841	FKBP15	1
5842	FKBP1A	1
5843	FKBP1B	1
5844	FKBP2	3.277972e-01
5845	FKBP3	3.489250e-01
5846	FKBP4	1
5847	FKBP5	7.753805e-01
5848	FKBP6	9.119179e-02
5849	FKBP7	6.730174e-01
5850	FKBP8	8.837001e-01
5851	FKBP9	7.569620e-01
5852	FKBPL	3.494212e-02
5853	FKRP	6.483115e-01
5854	FKSG83	3.409479e-01
5855	FKTN	5.805699e-01
5856	FLAD1	9.805454e-01
5857	FLCN	8.387001e-01
5858	FLG	1
5859	FLG2	1
5860	FLI1	4.943149e-05
5861	FLII	9.989313e-01
5862	FLJ10357	9.894185e-01
5863	FLJ35220	1
5864	FLJ37543	4.362223e-01
5865	FLJ43860	9.245849e-01
5866	FLJ44635	1
5867	FLJ46321	9.213735e-01
5868	FLNA	9.962317e-01
5869	FLNB	1
5870	FLNC	9.999629e-01
5871	FLOT1	9.634915e-01
5872	FLOT2	1
5873	FLRT1	1
5874	FLRT2	1
5875	FLRT3	1
5876	FLT1	7.832886e-01
5877	FLT3	3.006216e-02
5878	FLT3LG	2.257367e-01
5879	FLT4	3.064729e-01
5880	FLVCR1	1
5881	FLVCR2	9.364532e-01
Done

Running MutSig 2:
Scatter job 65: processing genes 5791 - 5881
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FLG
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
Cons ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
KS ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
FLG   10000 perm   12 sec   (858 perm/sec)   p_kst 2.221000e-01   p_cons 3.380000e-01   p_joint 3.918000e-01

Outputting figure to mutsig2_images.part000000000065/FLG.128_12194_10000_0.2221_0.338_0.3918.png
                gene_name: FLG
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
FLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
KS ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
FLG2   10000 perm   5 sec   (2151 perm/sec)   p_kst 8.863000e-01   p_cons 8.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLG2.52_7184_10000_0.8863_0.8764_1.png
                gene_name: FLG2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
FLJ46321
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
KS ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
FLJ46321   10000 perm   3 sec   (2923 perm/sec)   p_kst 4.383000e-01   p_cons 9.800000e-02   p_joint 3.188000e-01

Joint ci ratio: 5.934201e-02	ci left: 1.737585e-01	ci right 1.844350e-01	k: 3581	n:20000
Cons ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
KS ci ratio: 3.207717e-02	ci left: 4.205798e-01	ci right 4.343413e-01	k: 8549	n:20000
FLJ46321   20000 perm   7 sec   (2752 perm/sec)   p_kst 4.274500e-01   p_cons 9.200000e-02   p_joint 1.790500e-01

Outputting figure to mutsig2_images.part000000000065/FLJ46321.31_4747_20000_0.42745_0.092_0.17905.png
                gene_name: FLJ46321
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 5 percent done.
FLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
Cons ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
KS ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
FLT1   10000 perm   3 sec   (3469 perm/sec)   p_kst 8.254000e-01   p_cons 6.415000e-01   p_joint 9.097000e-01

Outputting figure to mutsig2_images.part000000000065/FLT1.21_4400_10000_0.8254_0.6415_0.9097.png
                gene_name: FLT1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 7 percent done.
FLNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
Cons ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
FLNC   10000 perm   4 sec   (2466 perm/sec)   p_kst 7.859000e-01   p_cons 8.940000e-02   p_joint 4.441000e-01

Joint ci ratio: 3.586884e-02	ci left: 3.671384e-01	ci right 3.805983e-01	k: 7477	n:20000
Cons ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
KS ci ratio: 1.426549e-02	ci left: 7.848940e-01	ci right 7.962214e-01	k: 15812	n:20000
FLNC   20000 perm   9 sec   (2322 perm/sec)   p_kst 7.906000e-01   p_cons 8.695000e-02   p_joint 3.738500e-01

Outputting figure to mutsig2_images.part000000000065/FLNC.18_8370_20000_0.7906_0.08695_0.37385.png
                gene_name: FLNC
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 9 percent done.
FHOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
Cons ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
KS ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
FHOD3   10000 perm   3 sec   (3374 perm/sec)   p_kst 6.816000e-01   p_cons 5.580000e-01   p_joint 7.809000e-01

Outputting figure to mutsig2_images.part000000000065/FHOD3.13_4420_10000_0.6816_0.558_0.7809.png
                gene_name: FHOD3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 11 percent done.
FLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
FLT4   10000 perm   3 sec   (3563 perm/sec)   p_kst 3.456000e-01   p_cons 1.720000e-01   p_joint 3.547000e-01

Outputting figure to mutsig2_images.part000000000065/FLT4.13_4220_10000_0.3456_0.172_0.3547.png
                gene_name: FLT4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 12 percent done.
FLI1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
Cons ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
KS ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
FLI1   10000 perm   2 sec   (4721 perm/sec)   p_kst 1.503000e-01   p_cons 5.800000e-01   p_joint 2.652000e-01

Outputting figure to mutsig2_images.part000000000065/FLI1.11_1395_10000_0.1503_0.58_0.2652.png
                gene_name: FLI1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 14 percent done.
FLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
Cons ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
KS ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
FLNB   10000 perm   3 sec   (2997 perm/sec)   p_kst 4.800000e-03   p_cons 5.665000e-01   p_joint 3.880000e-02

Joint ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
Cons ci ratio: 2.316270e-02	ci left: 5.819431e-01	ci right 5.956310e-01	k: 11776	n:20000
KS ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
FLNB   20000 perm   7 sec   (2792 perm/sec)   p_kst 4.700000e-03   p_cons 5.888000e-01   p_joint 3.080000e-02

Joint ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
Cons ci ratio: 1.895300e-02	ci left: 5.821716e-01	ci right 5.933447e-01	k: 17633	n:30000
KS ci ratio: 3.130289e-01	ci left: 4.386948e-03	ci right 6.044432e-03	k: 155	n:30000
FLNB   30000 perm   11 sec   (2712 perm/sec)   p_kst 5.166667e-03   p_cons 5.877667e-01   p_joint 2.216667e-02

Joint ci ratio: 1.533403e-01	ci left: 1.484121e-02	ci right 1.732977e-02	k: 642	n:40000
Cons ci ratio: 1.641535e-02	ci left: 5.828824e-01	ci right 5.925549e-01	k: 23509	n:40000
KS ci ratio: 2.635553e-01	ci left: 4.775457e-03	ci right 6.247731e-03	k: 219	n:40000
FLNB   40000 perm   15 sec   (2656 perm/sec)   p_kst 5.475000e-03   p_cons 5.877250e-01   p_joint 1.605000e-02

Joint ci ratio: 1.581376e-01	ci left: 1.117930e-02	ci right 1.311796e-02	k: 606	n:50000
Cons ci ratio: 1.488403e-02	ci left: 5.767608e-01	ci right 5.854298e-01	k: 29055	n:50000
KS ci ratio: 2.397081e-01	ci left: 4.682435e-03	ci right 5.976019e-03	k: 265	n:50000
FLNB   50000 perm   19 sec   (2611 perm/sec)   p_kst 5.300000e-03   p_cons 5.811000e-01   p_joint 1.212000e-02

Joint ci ratio: 1.440994e-01	ci left: 1.130479e-02	ci right 1.307620e-02	k: 730	n:60000
Cons ci ratio: 1.361146e-02	ci left: 5.762723e-01	ci right 5.841866e-01	k: 34814	n:60000
KS ci ratio: 2.142160e-01	ci left: 4.955465e-03	ci right 6.159787e-03	k: 332	n:60000
FLNB   60000 perm   23 sec   (2571 perm/sec)   p_kst 5.533333e-03   p_cons 5.802333e-01   p_joint 1.216667e-02

Joint ci ratio: 1.243393e-01	ci left: 1.312883e-02	ci right 1.488322e-02	k: 979	n:70000
Cons ci ratio: 1.257681e-02	ci left: 5.775347e-01	ci right 5.848585e-01	k: 40684	n:70000
KS ci ratio: 1.989705e-01	ci left: 4.965560e-03	ci right 6.076034e-03	k: 385	n:70000
FLNB   70000 perm   28 sec   (2540 perm/sec)   p_kst 5.500000e-03   p_cons 5.812000e-01   p_joint 1.398571e-02

Joint ci ratio: 1.126421e-01	ci left: 1.407185e-02	ci right 1.576360e-02	k: 1192	n:80000
Cons ci ratio: 1.177240e-02	ci left: 5.774467e-01	ci right 5.842974e-01	k: 46470	n:80000
KS ci ratio: 1.872205e-01	ci left: 4.939665e-03	ci right 5.971698e-03	k: 435	n:80000
FLNB   80000 perm   32 sec   (2507 perm/sec)   p_kst 5.437500e-03   p_cons 5.808750e-01   p_joint 1.490000e-02

Joint ci ratio: 1.107316e-01	ci left: 1.297233e-02	ci right 1.450370e-02	k: 1235	n:90000
Cons ci ratio: 1.110136e-02	ci left: 5.775460e-01	ci right 5.840044e-01	k: 52270	n:90000
KS ci ratio: 1.764229e-01	ci left: 4.974137e-03	ci right 5.947045e-03	k: 490	n:90000
FLNB   90000 perm   36 sec   (2480 perm/sec)   p_kst 5.444444e-03   p_cons 5.807778e-01   p_joint 1.372222e-02

Joint ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
Cons ci ratio: 1.053900e-02	ci left: 5.773741e-01	ci right 5.835012e-01	k: 58044	n:100000
KS ci ratio: 1.695000e-01	ci left: 4.868955e-03	ci right 5.780099e-03	k: 531	n:100000
FLNB   100000 perm   41 sec   (2456 perm/sec)   p_kst 5.310000e-03   p_cons 5.804400e-01   p_joint 1.205000e-02

Joint ci ratio: 1.085847e-01	ci left: 1.107289e-02	ci right 1.235305e-02	k: 1287	n:110000
Cons ci ratio: 1.004656e-02	ci left: 5.776136e-01	ci right 5.834549e-01	k: 63859	n:110000
KS ci ratio: 1.613627e-01	ci left: 4.905638e-03	ci right 5.775302e-03	k: 586	n:110000
FLNB   110000 perm   45 sec   (2429 perm/sec)   p_kst 5.327273e-03   p_cons 5.805364e-01   p_joint 1.170000e-02

Joint ci ratio: 1.048755e-01	ci left: 1.090441e-02	ci right 1.211937e-02	k: 1380	n:120000
Cons ci ratio: 9.621884e-03	ci left: 5.775851e-01	ci right 5.831777e-01	k: 69646	n:120000
KS ci ratio: 1.546587e-01	ci left: 4.913040e-03	ci right 5.744475e-03	k: 638	n:120000
FLNB   120000 perm   50 sec   (2404 perm/sec)   p_kst 5.316667e-03   p_cons 5.803833e-01   p_joint 1.150000e-02

Joint ci ratio: 9.681435e-02	ci left: 1.185054e-02	ci right 1.306366e-02	k: 1618	n:130000
Cons ci ratio: 9.242784e-03	ci left: 5.777811e-01	ci right 5.831538e-01	k: 75461	n:130000
KS ci ratio: 1.490520e-01	ci left: 4.897714e-03	ci right 5.693829e-03	k: 687	n:130000
FLNB   130000 perm   55 sec   (2379 perm/sec)   p_kst 5.284615e-03   p_cons 5.804692e-01   p_joint 1.244615e-02

Joint ci ratio: 1.080891e-01	ci left: 8.803810e-03	ci right 9.816669e-03	k: 1302	n:140000
Cons ci ratio: 8.900919e-03	ci left: 5.781886e-01	ci right 5.833652e-01	k: 81309	n:140000
KS ci ratio: 1.464303e-01	ci left: 4.719815e-03	ci right 5.472336e-03	k: 712	n:140000
FLNB   140000 perm   59 sec   (2354 perm/sec)   p_kst 5.085714e-03   p_cons 5.807786e-01   p_joint 9.300000e-03

Joint ci ratio: 1.081230e-01	ci left: 8.216754e-03	ci right 9.162384e-03	k: 1302	n:150000
Cons ci ratio: 8.607328e-03	ci left: 5.778110e-01	ci right 5.828125e-01	k: 87047	n:150000
KS ci ratio: 1.409035e-01	ci left: 4.771513e-03	ci right 5.501150e-03	k: 769	n:150000
FLNB   150000 perm   64 sec   (2331 perm/sec)   p_kst 5.126667e-03   p_cons 5.803133e-01   p_joint 8.680000e-03

Joint ci ratio: 1.073661e-01	ci left: 7.818670e-03	ci right 8.711786e-03	k: 1321	n:160000
Cons ci ratio: 8.339590e-03	ci left: 5.775645e-01	ci right 5.824076e-01	k: 92798	n:160000
KS ci ratio: 1.361242e-01	ci left: 4.805138e-03	ci right 5.512975e-03	k: 824	n:160000
FLNB   160000 perm   69 sec   (2306 perm/sec)   p_kst 5.150000e-03   p_cons 5.799875e-01   p_joint 8.256250e-03

Joint ci ratio: 1.055960e-01	ci left: 7.616362e-03	ci right 8.471131e-03	k: 1366	n:170000
Cons ci ratio: 8.085015e-03	ci left: 5.779733e-01	ci right 5.826710e-01	k: 98655	n:170000
KS ci ratio: 1.321783e-01	ci left: 4.806731e-03	ci right 5.492665e-03	k: 874	n:170000
FLNB   170000 perm   74 sec   (2283 perm/sec)   p_kst 5.141176e-03   p_cons 5.803235e-01   p_joint 8.035294e-03

Joint ci ratio: 9.547784e-02	ci left: 8.834589e-03	ci right 9.725768e-03	k: 1669	n:180000
Cons ci ratio: 7.857336e-03	ci left: 5.780328e-01	ci right 5.825980e-01	k: 104457	n:180000
KS ci ratio: 1.294746e-01	ci left: 4.738507e-03	ci right 5.399810e-03	k: 911	n:180000
FLNB   180000 perm   80 sec   (2260 perm/sec)   p_kst 5.061111e-03   p_cons 5.803167e-01   p_joint 9.272222e-03

Joint ci ratio: 7.570268e-02	ci left: 1.338870e-02	ci right 1.444726e-02	k: 2643	n:190000
Cons ci ratio: 7.643324e-03	ci left: 5.783773e-01	ci right 5.828202e-01	k: 110314	n:190000
KS ci ratio: 1.256067e-01	ci left: 4.779548e-03	ci right 5.425168e-03	k: 968	n:190000
FLNB   190000 perm   85 sec   (2238 perm/sec)   p_kst 5.094737e-03   p_cons 5.806000e-01   p_joint 1.391053e-02

Joint ci ratio: 7.415361e-02	ci left: 1.326874e-02	ci right 1.429543e-02	k: 2755	n:200000
Cons ci ratio: 7.444976e-03	ci left: 5.787489e-01	ci right 5.830787e-01	k: 116183	n:200000
KS ci ratio: 1.223058e-01	ci left: 4.797356e-03	ci right 5.427119e-03	k: 1021	n:200000
FLNB   200000 perm   90 sec   (2216 perm/sec)   p_kst 5.105000e-03   p_cons 5.809150e-01   p_joint 1.377500e-02

Joint ci ratio: 7.552246e-02	ci left: 1.218805e-02	ci right 1.314928e-02	k: 2659	n:210000
Cons ci ratio: 7.268195e-03	ci left: 5.786242e-01	ci right 5.828498e-01	k: 121955	n:210000
KS ci ratio: 1.200404e-01	ci left: 4.748989e-03	ci right 5.360034e-03	k: 1060	n:210000
FLNB   210000 perm   96 sec   (2193 perm/sec)   p_kst 5.047619e-03   p_cons 5.807381e-01   p_joint 1.266190e-02

Joint ci ratio: 7.027614e-02	ci left: 1.345512e-02	ci right 1.443957e-02	k: 3067	n:220000
Cons ci ratio: 7.096476e-03	ci left: 5.789895e-01	ci right 5.831174e-01	k: 127832	n:220000
KS ci ratio: 1.173614e-01	ci left: 4.749240e-03	ci right 5.345734e-03	k: 1109	n:220000
FLNB   220000 perm   101 sec   (2172 perm/sec)   p_kst 5.040909e-03   p_cons 5.810545e-01   p_joint 1.394091e-02

Joint ci ratio: 6.958852e-02	ci left: 1.313489e-02	ci right 1.408612e-02	k: 3129	n:230000
Cons ci ratio: 6.944865e-03	ci left: 5.787281e-01	ci right 5.827656e-01	k: 133572	n:230000
KS ci ratio: 1.150538e-01	ci left: 4.732714e-03	ci right 5.314650e-03	k: 1154	n:230000
FLNB   230000 perm   107 sec   (2152 perm/sec)   p_kst 5.017391e-03   p_cons 5.807478e-01   p_joint 1.360435e-02

Joint ci ratio: 7.278441e-02	ci left: 1.150682e-02	ci right 1.238003e-02	k: 2865	n:240000
Cons ci ratio: 6.798554e-03	ci left: 5.787770e-01	ci right 5.827294e-01	k: 139381	n:240000
KS ci ratio: 1.121283e-01	ci left: 4.782470e-03	ci right 5.354583e-03	k: 1215	n:240000
FLNB   240000 perm   113 sec   (2132 perm/sec)   p_kst 5.062500e-03   p_cons 5.807542e-01   p_joint 1.193750e-02

Joint ci ratio: 7.216785e-02	ci left: 1.124286e-02	ci right 1.208851e-02	k: 2915	n:250000
Cons ci ratio: 6.658600e-03	ci left: 5.790070e-01	ci right 5.828792e-01	k: 145236	n:250000
KS ci ratio: 1.097613e-01	ci left: 4.797290e-03	ci right 5.358278e-03	k: 1268	n:250000
FLNB   250000 perm   118 sec   (2111 perm/sec)   p_kst 5.072000e-03   p_cons 5.809440e-01   p_joint 1.166000e-02

Joint ci ratio: 6.695612e-02	ci left: 1.257567e-02	ci right 1.345062e-02	k: 3382	n:260000
Cons ci ratio: 6.529937e-03	ci left: 5.789968e-01	ci right 5.827937e-01	k: 151033	n:260000
KS ci ratio: 1.077843e-01	ci left: 4.788629e-03	ci right 5.337878e-03	k: 1315	n:260000
FLNB   260000 perm   124 sec   (2091 perm/sec)   p_kst 5.057692e-03   p_cons 5.808962e-01   p_joint 1.300769e-02

Joint ci ratio: 6.811316e-02	ci left: 1.170556e-02	ci right 1.253459e-02	k: 3271	n:270000
Cons ci ratio: 6.410211e-03	ci left: 5.788546e-01	ci right 5.825807e-01	k: 156794	n:270000
KS ci ratio: 1.063030e-01	ci left: 4.744635e-03	ci right 5.280890e-03	k: 1352	n:270000
FLNB   270000 perm   130 sec   (2072 perm/sec)   p_kst 5.007407e-03   p_cons 5.807185e-01   p_joint 1.211481e-02

Joint ci ratio: 6.712839e-02	ci left: 1.162806e-02	ci right 1.243923e-02	k: 3368	n:280000
Cons ci ratio: 6.296050e-03	ci left: 5.787839e-01	ci right 5.824430e-01	k: 162572	n:280000
KS ci ratio: 1.039827e-01	ci left: 4.787317e-03	ci right 5.315865e-03	k: 1413	n:280000
FLNB   280000 perm   136 sec   (2052 perm/sec)   p_kst 5.046429e-03   p_cons 5.806143e-01   p_joint 1.202857e-02

Joint ci ratio: 6.694174e-02	ci left: 1.129484e-02	ci right 1.208049e-02	k: 3388	n:290000
Cons ci ratio: 6.184976e-03	ci left: 5.789395e-01	ci right 5.825347e-01	k: 168414	n:290000
KS ci ratio: 1.025798e-01	ci left: 4.753241e-03	ci right 5.270520e-03	k: 1452	n:290000
FLNB   290000 perm   143 sec   (2034 perm/sec)   p_kst 5.006897e-03   p_cons 5.807379e-01   p_joint 1.168276e-02

Joint ci ratio: 6.653915e-02	ci left: 1.105596e-02	ci right 1.182019e-02	k: 3430	n:300000
Cons ci ratio: 6.077665e-03	ci left: 5.792387e-01	ci right 5.827731e-01	k: 174302	n:300000
KS ci ratio: 1.009266e-01	ci left: 4.750728e-03	ci right 5.258907e-03	k: 1500	n:300000
FLNB   300000 perm   149 sec   (2017 perm/sec)   p_kst 5.000000e-03   p_cons 5.810067e-01   p_joint 1.143333e-02

Joint ci ratio: 6.286561e-02	ci left: 1.199752e-02	ci right 1.277938e-02	k: 3839	n:310000
Cons ci ratio: 5.981175e-03	ci left: 5.790768e-01	ci right 5.825539e-01	k: 180053	n:310000
KS ci ratio: 9.906211e-02	ci left: 4.776754e-03	ci right 5.277729e-03	k: 1557	n:310000
FLNB   310000 perm   155 sec   (2000 perm/sec)   p_kst 5.022581e-03   p_cons 5.808161e-01   p_joint 1.238387e-02

Outputting figure to mutsig2_images.part000000000065/FLNB.12_8090_310000_0.0050226_0.58082_0.012384.png
                gene_name: FLNB
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.0050 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0053 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 16 percent done.
FLNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113893e-02	ci left: 4.659699e-01	ci right 4.856442e-01	k: 4758	n:10000
Cons ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
KS ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
FLNA   10000 perm   3 sec   (2990 perm/sec)   p_kst 3.783000e-01   p_cons 6.568000e-01   p_joint 4.758000e-01

Outputting figure to mutsig2_images.part000000000065/FLNA.11_8132_10000_0.3783_0.6568_0.4758.png
                gene_name: FLNA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
FILIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 9.159885e-03	ci left: 9.437779e-01	ci right 9.525587e-01	k: 9483	n:10000
FILIP1   10000 perm   3 sec   (3982 perm/sec)   p_kst 9.483000e-01   p_cons 7.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FILIP1.10_3662_10000_0.9483_0.7748_1.png
                gene_name: FILIP1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
FLT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
FLT3   10000 perm   2 sec   (4119 perm/sec)   p_kst 7.866000e-01   p_cons 7.322000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLT3.10_3078_10000_0.7866_0.7322_1.png
                gene_name: FLT3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
FGFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
KS ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
FGFR2   10000 perm   2 sec   (4188 perm/sec)   p_kst 6.413000e-01   p_cons 5.486000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR2.8_2790_10000_0.6413_0.5486_0.6924.png
                gene_name: FGFR2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 23 percent done.
FIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
KS ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
FIG4   10000 perm   2 sec   (4369 perm/sec)   p_kst 9.293000e-01   p_cons 8.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FIG4.8_2816_10000_0.9293_0.8975_1.png
                gene_name: FIG4
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
FIGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
Cons ci ratio: 2.344649e-02	ci left: 7.277477e-01	ci right 7.451144e-01	k: 7365	n:10000
KS ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
FIGNL1   10000 perm   2 sec   (4707 perm/sec)   p_kst 5.095000e-01   p_cons 7.365000e-01   p_joint 6.940000e-01

Outputting figure to mutsig2_images.part000000000065/FIGNL1.8_2029_10000_0.5095_0.7365_0.694.png
                gene_name: FIGNL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 26 percent done.
FH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752183e-02	ci left: 8.260517e-01	ci right 8.407535e-01	k: 8335	n:10000
Cons ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
KS ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
FH   10000 perm   2 sec   (4910 perm/sec)   p_kst 6.796000e-01   p_cons 6.523000e-01   p_joint 8.335000e-01

Outputting figure to mutsig2_images.part000000000065/FH.7_1573_10000_0.6796_0.6523_0.8335.png
                gene_name: FH
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 28 percent done.
FKBPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
Cons ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
FKBPL   10000 perm   2 sec   (5068 perm/sec)   p_kst 7.987000e-01   p_cons 4.257000e-01   p_joint 7.830000e-01

Outputting figure to mutsig2_images.part000000000065/FKBPL.7_1054_10000_0.7987_0.4257_0.783.png
                gene_name: FKBPL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 30 percent done.
FHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
FHDC1   10000 perm   2 sec   (4828 perm/sec)   p_kst 3.165000e-01   p_cons 6.510000e-02   p_joint 1.555000e-01

Joint ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
Cons ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
KS ci ratio: 4.074771e-02	ci left: 3.098572e-01	ci right 3.227962e-01	k: 6326	n:20000
FHDC1   20000 perm   5 sec   (4269 perm/sec)   p_kst 3.163000e-01   p_cons 6.290000e-02   p_joint 1.102000e-01

Joint ci ratio: 7.511044e-02	ci left: 8.009854e-02	ci right 8.638245e-02	k: 2496	n:30000
Cons ci ratio: 8.770250e-02	ci left: 5.968872e-02	ci right 6.519639e-02	k: 1872	n:30000
KS ci ratio: 3.294373e-02	ci left: 3.153197e-01	ci right 3.259150e-01	k: 9618	n:30000
FHDC1   30000 perm   7 sec   (4034 perm/sec)   p_kst 3.206000e-01   p_cons 6.240000e-02   p_joint 8.320000e-02

Outputting figure to mutsig2_images.part000000000065/FHDC1.6_3476_30000_0.3206_0.0624_0.0832.png
                gene_name: FHDC1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 32 percent done.
FIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 7.714091e-03	ci left: 9.589035e-01	ci right 9.664239e-01	k: 9628	n:10000
FIGN   10000 perm   2 sec   (4503 perm/sec)   p_kst 9.628000e-01   p_cons 9.357000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FIGN.6_2288_10000_0.9628_0.9357_1.png
                gene_name: FIGN
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
FKBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
FKBP6   10000 perm   2 sec   (5126 perm/sec)   p_kst 5.913000e-01   p_cons 1.300000e-03   p_joint 1.120000e-02

Joint ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
Cons ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
KS ci ratio: 2.298378e-02	ci left: 5.857022e-01	ci right 5.993709e-01	k: 11851	n:20000
FKBP6   20000 perm   4 sec   (4506 perm/sec)   p_kst 5.925500e-01   p_cons 1.500000e-03   p_joint 7.550000e-03

Joint ci ratio: 1.809622e-01	ci left: 1.400516e-02	ci right 1.682316e-02	k: 461	n:30000
Cons ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
KS ci ratio: 1.876847e-02	ci left: 5.869143e-01	ci right 5.980678e-01	k: 17775	n:30000
FKBP6   30000 perm   7 sec   (4307 perm/sec)   p_kst 5.925000e-01   p_cons 1.933333e-03   p_joint 1.536667e-02

Joint ci ratio: 1.358189e-01	ci left: 1.901289e-02	ci right 2.180735e-02	k: 815	n:40000
Cons ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
KS ci ratio: 1.631394e-02	ci left: 5.858875e-01	ci right 5.955493e-01	k: 23629	n:40000
FKBP6   40000 perm   10 sec   (4140 perm/sec)   p_kst 5.907250e-01   p_cons 1.925000e-03   p_joint 2.037500e-02

Joint ci ratio: 1.257641e-01	ci left: 1.786008e-02	ci right 2.027621e-02	k: 952	n:50000
Cons ci ratio: 3.976255e-01	ci left: 1.555474e-03	ci right 2.344151e-03	k: 96	n:50000
KS ci ratio: 1.379832e-02	ci left: 6.131833e-01	ci right 6.217230e-01	k: 30873	n:50000
FKBP6   50000 perm   12 sec   (4052 perm/sec)   p_kst 6.174600e-01   p_cons 1.920000e-03   p_joint 1.904000e-02

Joint ci ratio: 1.348727e-01	ci left: 1.294623e-02	ci right 1.483456e-02	k: 832	n:60000
Cons ci ratio: 3.667896e-01	ci left: 1.552377e-03	ci right 2.263855e-03	k: 113	n:60000
KS ci ratio: 1.260662e-02	ci left: 6.131632e-01	ci right 6.209588e-01	k: 37024	n:60000
FKBP6   60000 perm   15 sec   (3974 perm/sec)   p_kst 6.170667e-01   p_cons 1.883333e-03   p_joint 1.386667e-02

Joint ci ratio: 1.226371e-01	ci left: 1.350279e-02	ci right 1.528066e-02	k: 1006	n:70000
Cons ci ratio: 3.448161e-01	ci left: 1.525754e-03	ci right 2.173802e-03	k: 128	n:70000
KS ci ratio: 1.165621e-02	ci left: 6.140738e-01	ci right 6.212878e-01	k: 43238	n:70000
FKBP6   70000 perm   18 sec   (3905 perm/sec)   p_kst 6.176857e-01   p_cons 1.828571e-03   p_joint 1.437143e-02

Joint ci ratio: 1.157858e-01	ci left: 1.330654e-02	ci right 1.495398e-02	k: 1129	n:80000
Cons ci ratio: 3.275117e-01	ci left: 1.495268e-03	ci right 2.091794e-03	k: 142	n:80000
KS ci ratio: 1.090625e-02	ci left: 6.141844e-01	ci right 6.209321e-01	k: 49405	n:80000
FKBP6   80000 perm   21 sec   (3840 perm/sec)   p_kst 6.175625e-01   p_cons 1.775000e-03   p_joint 1.411250e-02

Joint ci ratio: 1.119783e-01	ci left: 1.268058e-02	ci right 1.419547e-02	k: 1208	n:90000
Cons ci ratio: 3.077053e-01	ci left: 1.523429e-03	ci right 2.087238e-03	k: 161	n:90000
KS ci ratio: 1.030179e-02	ci left: 6.134921e-01	ci right 6.198560e-01	k: 55501	n:90000
FKBP6   90000 perm   24 sec   (3775 perm/sec)   p_kst 6.166778e-01   p_cons 1.788889e-03   p_joint 1.342222e-02

Joint ci ratio: 1.080538e-01	ci left: 1.228762e-02	ci right 1.370084e-02	k: 1298	n:100000
Cons ci ratio: 2.927308e-01	ci left: 1.528290e-03	ci right 2.061274e-03	k: 178	n:100000
KS ci ratio: 9.785511e-03	ci left: 6.130574e-01	ci right 6.190959e-01	k: 61608	n:100000
FKBP6   100000 perm   27 sec   (3715 perm/sec)   p_kst 6.160800e-01   p_cons 1.780000e-03   p_joint 1.298000e-02

Joint ci ratio: 1.534182e-01	ci left: 5.447200e-03	ci right 6.360964e-03	k: 648	n:110000
Cons ci ratio: 2.833936e-01	ci left: 1.490561e-03	ci right 1.990843e-03	k: 190	n:110000
KS ci ratio: 9.903790e-03	ci left: 5.845749e-01	ci right 5.904023e-01	k: 64624	n:110000
FKBP6   110000 perm   30 sec   (3652 perm/sec)   p_kst 5.874909e-01   p_cons 1.727273e-03   p_joint 5.890909e-03

Joint ci ratio: 8.685378e-02	ci left: 1.596619e-02	ci right 1.742397e-02	k: 2002	n:120000
Cons ci ratio: 2.593605e-01	ci left: 1.653760e-03	ci right 2.154136e-03	k: 227	n:120000
KS ci ratio: 9.495198e-03	ci left: 5.840328e-01	ci right 5.896130e-01	k: 70419	n:120000
FKBP6   120000 perm   33 sec   (3597 perm/sec)   p_kst 5.868250e-01   p_cons 1.891667e-03   p_joint 1.668333e-02

Joint ci ratio: 8.606343e-02	ci left: 1.503122e-02	ci right 1.639051e-02	k: 2041	n:130000
Cons ci ratio: 2.522743e-01	ci left: 1.620133e-03	ci right 2.094836e-03	k: 240	n:130000
KS ci ratio: 9.118393e-03	ci left: 5.843716e-01	ci right 5.897322e-01	k: 76317	n:130000
FKBP6   130000 perm   37 sec   (3541 perm/sec)   p_kst 5.870538e-01   p_cons 1.846154e-03   p_joint 1.570000e-02

Joint ci ratio: 8.335894e-02	ci left: 1.490137e-02	ci right 1.620452e-02	k: 2176	n:140000
Cons ci ratio: 2.457386e-01	ci left: 1.591470e-03	ci right 2.043849e-03	k: 253	n:140000
KS ci ratio: 8.791051e-03	ci left: 5.842296e-01	ci right 5.893954e-01	k: 82154	n:140000
FKBP6   140000 perm   40 sec   (3490 perm/sec)   p_kst 5.868143e-01   p_cons 1.807143e-03   p_joint 1.554286e-02

Joint ci ratio: 8.134209e-02	ci left: 1.462609e-02	ci right 1.587275e-02	k: 2286	n:150000
Cons ci ratio: 2.348872e-01	ci left: 1.635747e-03	ci right 2.077198e-03	k: 277	n:150000
KS ci ratio: 8.483646e-03	ci left: 5.848503e-01	ci right 5.898397e-01	k: 88102	n:150000
FKBP6   150000 perm   44 sec   (3438 perm/sec)   p_kst 5.873467e-01   p_cons 1.846667e-03   p_joint 1.524000e-02

Joint ci ratio: 9.711075e-02	ci left: 9.591427e-03	ci right 1.057645e-02	k: 1612	n:160000
Cons ci ratio: 2.487265e-01	ci left: 1.357338e-03	ci right 1.748580e-03	k: 247	n:160000
KS ci ratio: 8.213991e-03	ci left: 5.849455e-01	ci right 5.897763e-01	k: 93978	n:160000
FKBP6   160000 perm   47 sec   (3388 perm/sec)   p_kst 5.873625e-01   p_cons 1.543750e-03   p_joint 1.007500e-02

Joint ci ratio: 8.434272e-02	ci left: 1.201756e-02	ci right 1.308151e-02	k: 2132	n:170000
Cons ci ratio: 2.415298e-01	ci left: 1.360312e-03	ci right 1.739366e-03	k: 262	n:170000
KS ci ratio: 7.966678e-03	ci left: 5.851437e-01	ci right 5.898298e-01	k: 99873	n:170000
FKBP6   170000 perm   51 sec   (3332 perm/sec)   p_kst 5.874882e-01   p_cons 1.541176e-03   p_joint 1.254118e-02

Joint ci ratio: 8.602001e-02	ci left: 1.091468e-02	ci right 1.190115e-02	k: 2052	n:180000
Cons ci ratio: 2.320162e-01	ci left: 1.399716e-03	ci right 1.772187e-03	k: 284	n:180000
KS ci ratio: 7.733341e-03	ci left: 5.857665e-01	ci right 5.903195e-01	k: 105848	n:180000
FKBP6   180000 perm   55 sec   (3267 perm/sec)   p_kst 5.880444e-01   p_cons 1.577778e-03   p_joint 1.140000e-02

Joint ci ratio: 8.765737e-02	ci left: 9.958987e-03	ci right 1.087710e-02	k: 1978	n:190000
Cons ci ratio: 2.250179e-01	ci left: 1.415363e-03	ci right 1.779062e-03	k: 302	n:190000
KS ci ratio: 7.529165e-03	ci left: 5.856934e-01	ci right 5.901250e-01	k: 111703	n:190000
FKBP6   190000 perm   59 sec   (3205 perm/sec)   p_kst 5.879105e-01   p_cons 1.589474e-03   p_joint 1.041053e-02

Joint ci ratio: 8.643193e-02	ci left: 9.739786e-03	ci right 1.062450e-02	k: 2035	n:200000
Cons ci ratio: 2.176008e-01	ci left: 1.443778e-03	ci right 1.800916e-03	k: 323	n:200000
KS ci ratio: 7.343228e-03	ci left: 5.854388e-01	ci right 5.897586e-01	k: 117520	n:200000
FKBP6   200000 perm   64 sec   (3147 perm/sec)   p_kst 5.876000e-01   p_cons 1.615000e-03   p_joint 1.017500e-02

Joint ci ratio: 8.494914e-02	ci left: 9.611469e-03	ci right 1.046880e-02	k: 2107	n:210000
Cons ci ratio: 2.130477e-01	ci left: 1.438098e-03	ci right 1.785415e-03	k: 337	n:210000
KS ci ratio: 7.167034e-03	ci left: 5.854386e-01	ci right 5.896542e-01	k: 123385	n:210000
FKBP6   210000 perm   68 sec   (3096 perm/sec)   p_kst 5.875476e-01   p_cons 1.604762e-03   p_joint 1.003333e-02

Joint ci ratio: 8.490774e-02	ci left: 9.187846e-03	ci right 1.000697e-02	k: 2110	n:220000
Cons ci ratio: 2.087690e-01	ci left: 1.433005e-03	ci right 1.771253e-03	k: 351	n:220000
KS ci ratio: 7.003139e-03	ci left: 5.854259e-01	ci right 5.895446e-01	k: 129247	n:220000
FKBP6   220000 perm   72 sec   (3044 perm/sec)   p_kst 5.874864e-01   p_cons 1.595455e-03   p_joint 9.590909e-03

Joint ci ratio: 8.357752e-02	ci left: 9.077776e-03	ci right 9.873790e-03	k: 2178	n:230000
Cons ci ratio: 2.039028e-01	ci left: 1.440796e-03	ci right 1.771968e-03	k: 368	n:230000
KS ci ratio: 6.849137e-03	ci left: 5.854762e-01	ci right 5.895042e-01	k: 135123	n:230000
FKBP6   230000 perm   77 sec   (3000 perm/sec)   p_kst 5.874913e-01   p_cons 1.600000e-03   p_joint 9.469565e-03

Joint ci ratio: 8.367172e-02	ci left: 8.683143e-03	ci right 9.445451e-03	k: 2174	n:240000
Cons ci ratio: 1.996210e-01	ci left: 1.444062e-03	ci right 1.768166e-03	k: 384	n:240000
KS ci ratio: 6.709594e-03	ci left: 5.851813e-01	ci right 5.891249e-01	k: 140917	n:240000
FKBP6   240000 perm   81 sec   (2961 perm/sec)   p_kst 5.871542e-01   p_cons 1.600000e-03   p_joint 9.058333e-03

Joint ci ratio: 8.015584e-02	ci left: 9.096002e-03	ci right 9.859435e-03	k: 2368	n:250000
Cons ci ratio: 1.943879e-01	ci left: 1.466158e-03	ci right 1.785575e-03	k: 405	n:250000
KS ci ratio: 6.574715e-03	ci left: 5.851710e-01	ci right 5.890350e-01	k: 146776	n:250000
FKBP6   250000 perm   86 sec   (2924 perm/sec)   p_kst 5.871040e-01   p_cons 1.620000e-03   p_joint 9.472000e-03

Joint ci ratio: 8.051429e-02	ci left: 8.670702e-03	ci right 9.401844e-03	k: 2348	n:260000
Cons ci ratio: 1.918089e-01	ci left: 1.450029e-03	ci right 1.761251e-03	k: 416	n:260000
KS ci ratio: 6.442797e-03	ci left: 5.855279e-01	ci right 5.893163e-01	k: 152730	n:260000
FKBP6   260000 perm   90 sec   (2890 perm/sec)   p_kst 5.874231e-01   p_cons 1.600000e-03   p_joint 9.030769e-03

Joint ci ratio: 7.415205e-02	ci left: 9.864404e-03	ci right 1.062765e-02	k: 2765	n:270000
Cons ci ratio: 1.895517e-01	ci left: 1.431591e-03	ci right 1.734824e-03	k: 426	n:270000
KS ci ratio: 6.322614e-03	ci left: 5.855440e-01	ci right 5.892615e-01	k: 158599	n:270000
FKBP6   270000 perm   95 sec   (2854 perm/sec)   p_kst 5.874037e-01   p_cons 1.577778e-03   p_joint 1.024074e-02

Joint ci ratio: 7.337939e-02	ci left: 9.718904e-03	ci right 1.046272e-02	k: 2824	n:280000
Cons ci ratio: 1.860971e-01	ci left: 1.434920e-03	ci right 1.732692e-03	k: 442	n:280000
KS ci ratio: 6.203016e-03	ci left: 5.860206e-01	ci right 5.896705e-01	k: 164597	n:280000
FKBP6   280000 perm   99 sec   (2820 perm/sec)   p_kst 5.878464e-01   p_cons 1.578571e-03   p_joint 1.008571e-02

Joint ci ratio: 7.213917e-02	ci left: 9.715551e-03	ci right 1.044601e-02	k: 2922	n:290000
Cons ci ratio: 1.832250e-01	ci left: 1.431484e-03	ci right 1.723450e-03	k: 456	n:290000
KS ci ratio: 6.096495e-03	ci left: 5.859438e-01	ci right 5.895303e-01	k: 170444	n:290000
FKBP6   290000 perm   104 sec   (2788 perm/sec)   p_kst 5.877379e-01   p_cons 1.572414e-03   p_joint 1.007586e-02

Joint ci ratio: 7.115035e-02	ci left: 9.660126e-03	ci right 1.037605e-02	k: 3004	n:300000
Cons ci ratio: 1.789660e-01	ci left: 1.453778e-03	ci right 1.742653e-03	k: 478	n:300000
KS ci ratio: 5.995567e-03	ci left: 5.858493e-01	ci right 5.893757e-01	k: 176284	n:300000
FKBP6   300000 perm   109 sec   (2756 perm/sec)   p_kst 5.876133e-01   p_cons 1.593333e-03   p_joint 1.001333e-02

Joint ci ratio: 7.315469e-02	ci left: 8.841554e-03	ci right 9.516057e-03	k: 2844	n:310000
Cons ci ratio: 1.758720e-01	ci left: 1.459286e-03	ci right 1.743710e-03	k: 495	n:310000
KS ci ratio: 5.898981e-03	ci left: 5.858034e-01	ci right 5.892724e-01	k: 182137	n:310000
FKBP6   310000 perm   114 sec   (2725 perm/sec)   p_kst 5.875387e-01   p_cons 1.596774e-03   p_joint 9.174194e-03

Joint ci ratio: 7.191335e-02	ci left: 8.869023e-03	ci right 9.533661e-03	k: 2943	n:320000
Cons ci ratio: 1.717634e-01	ci left: 1.485423e-03	ci right 1.767476e-03	k: 519	n:320000
KS ci ratio: 5.806205e-03	ci left: 5.858201e-01	ci right 5.892345e-01	k: 188009	n:320000
FKBP6   320000 perm   119 sec   (2693 perm/sec)   p_kst 5.875281e-01   p_cons 1.621875e-03   p_joint 9.196875e-03

Joint ci ratio: 7.229606e-02	ci left: 8.510938e-03	ci right 9.152277e-03	k: 2913	n:330000
Cons ci ratio: 1.690225e-01	ci left: 1.489728e-03	ci right 1.767626e-03	k: 536	n:330000
KS ci ratio: 5.718424e-03	ci left: 5.857726e-01	ci right 5.891349e-01	k: 193860	n:330000
FKBP6   330000 perm   124 sec   (2663 perm/sec)   p_kst 5.874545e-01   p_cons 1.624242e-03   p_joint 8.827273e-03

Joint ci ratio: 6.646711e-02	ci left: 9.789754e-03	ci right 1.046569e-02	k: 3442	n:340000
Cons ci ratio: 1.659594e-01	ci left: 1.502272e-03	ci right 1.776923e-03	k: 556	n:340000
KS ci ratio: 5.635397e-03	ci left: 5.856518e-01	ci right 5.889644e-01	k: 199685	n:340000
FKBP6   340000 perm   129 sec   (2633 perm/sec)   p_kst 5.873088e-01   p_cons 1.635294e-03   p_joint 1.012353e-02

Joint ci ratio: 6.567248e-02	ci left: 9.746075e-03	ci right 1.041065e-02	k: 3526	n:350000
Cons ci ratio: 1.630569e-01	ci left: 1.514141e-03	ci right 1.785646e-03	k: 576	n:350000
KS ci ratio: 5.552871e-03	ci left: 5.858012e-01	ci right 5.890659e-01	k: 205602	n:350000
FKBP6   350000 perm   134 sec   (2605 perm/sec)   p_kst 5.874343e-01   p_cons 1.645714e-03   p_joint 1.007429e-02

Joint ci ratio: 6.451874e-02	ci left: 9.822398e-03	ci right 1.047997e-02	k: 3653	n:360000
Cons ci ratio: 1.604363e-01	ci left: 1.522723e-03	ci right 1.790956e-03	k: 595	n:360000
KS ci ratio: 5.476157e-03	ci left: 5.857397e-01	ci right 5.889589e-01	k: 211446	n:360000
FKBP6   360000 perm   140 sec   (2576 perm/sec)   p_kst 5.873500e-01   p_cons 1.652778e-03   p_joint 1.014722e-02

Joint ci ratio: 6.386894e-02	ci left: 9.756366e-03	ci right 1.040269e-02	k: 3728	n:370000
Cons ci ratio: 1.583253e-01	ci left: 1.523087e-03	ci right 1.787518e-03	k: 611	n:370000
KS ci ratio: 5.402507e-03	ci left: 5.856846e-01	ci right 5.888600e-01	k: 217291	n:370000
FKBP6   370000 perm   145 sec   (2548 perm/sec)   p_kst 5.872730e-01   p_cons 1.651351e-03   p_joint 1.007568e-02

Joint ci ratio: 6.314619e-02	ci left: 9.722336e-03	ci right 1.035885e-02	k: 3814	n:380000
Cons ci ratio: 1.562955e-01	ci left: 1.523454e-03	ci right 1.784240e-03	k: 627	n:380000
KS ci ratio: 5.328856e-03	ci left: 5.858960e-01	ci right 5.890290e-01	k: 223236	n:380000
FKBP6   380000 perm   151 sec   (2520 perm/sec)   p_kst 5.874632e-01   p_cons 1.650000e-03   p_joint 1.003684e-02

Joint ci ratio: 6.251221e-02	ci left: 9.669895e-03	ci right 1.029639e-02	k: 3892	n:390000
Cons ci ratio: 1.541024e-01	ci left: 1.528752e-03	ci right 1.786435e-03	k: 645	n:390000
KS ci ratio: 5.260724e-03	ci left: 5.858581e-01	ci right 5.889508e-01	k: 229088	n:390000
FKBP6   390000 perm   156 sec   (2494 perm/sec)   p_kst 5.874051e-01   p_cons 1.653846e-03   p_joint 9.979487e-03

Joint ci ratio: 6.181836e-02	ci left: 9.644724e-03	ci right 1.026241e-02	k: 3980	n:400000
Cons ci ratio: 1.524597e-01	ci left: 1.524191e-03	ci right 1.778116e-03	k: 659	n:400000
KS ci ratio: 5.196426e-03	ci left: 5.857024e-01	ci right 5.887563e-01	k: 234892	n:400000
FKBP6   400000 perm   162 sec   (2468 perm/sec)   p_kst 5.872300e-01   p_cons 1.647500e-03   p_joint 9.950000e-03

Joint ci ratio: 7.091482e-02	ci left: 7.135137e-03	ci right 7.662104e-03	k: 3032	n:410000
Cons ci ratio: 1.422490e-01	ci left: 1.717249e-03	ci right 1.982553e-03	k: 757	n:410000
KS ci ratio: 5.134041e-03	ci left: 5.855911e-01	ci right 5.886077e-01	k: 240711	n:410000
FKBP6   410000 perm   168 sec   (2442 perm/sec)   p_kst 5.871000e-01   p_cons 1.846341e-03   p_joint 7.395122e-03

Joint ci ratio: 7.768317e-02	ci left: 5.792015e-03	ci right 6.262458e-03	k: 2530	n:420000
Cons ci ratio: 1.411373e-01	ci left: 1.703920e-03	ci right 1.964934e-03	k: 769	n:420000
KS ci ratio: 5.075145e-03	ci left: 5.853614e-01	ci right 5.883421e-01	k: 246478	n:420000
FKBP6   420000 perm   174 sec   (2417 perm/sec)   p_kst 5.868524e-01   p_cons 1.830952e-03   p_joint 6.023810e-03

Joint ci ratio: 7.686806e-02	ci left: 5.780470e-03	ci right 6.244829e-03	k: 2584	n:430000
Cons ci ratio: 1.401410e-01	ci left: 1.688974e-03	ci right 1.945720e-03	k: 780	n:430000
KS ci ratio: 5.017457e-03	ci left: 5.852171e-01	ci right 5.881631e-01	k: 252277	n:430000
FKBP6   430000 perm   180 sec   (2390 perm/sec)   p_kst 5.866907e-01   p_cons 1.813953e-03   p_joint 6.009302e-03

Joint ci ratio: 7.610710e-02	ci left: 5.765016e-03	ci right 6.223345e-03	k: 2636	n:440000
Cons ci ratio: 1.388148e-01	ci left: 1.683490e-03	ci right 1.936779e-03	k: 795	n:440000
KS ci ratio: 4.960251e-03	ci left: 5.852206e-01	ci right 5.881328e-01	k: 258138	n:440000
FKBP6   440000 perm   186 sec   (2366 perm/sec)   p_kst 5.866773e-01   p_cons 1.806818e-03   p_joint 5.990909e-03

Joint ci ratio: 7.531197e-02	ci left: 5.758992e-03	ci right 6.211849e-03	k: 2692	n:450000
Cons ci ratio: 1.371871e-01	ci left: 1.686843e-03	ci right 1.937419e-03	k: 814	n:450000
KS ci ratio: 4.903474e-03	ci left: 5.853708e-01	ci right 5.882503e-01	k: 264065	n:450000
FKBP6   450000 perm   192 sec   (2341 perm/sec)   p_kst 5.868111e-01   p_cons 1.808889e-03   p_joint 5.982222e-03

Joint ci ratio: 7.351253e-02	ci left: 5.917565e-03	ci right 6.371298e-03	k: 2825	n:460000
Cons ci ratio: 1.354526e-01	ci left: 1.694269e-03	ci right 1.942509e-03	k: 835	n:460000
KS ci ratio: 4.848581e-03	ci left: 5.855168e-01	ci right 5.883647e-01	k: 269993	n:460000
FKBP6   460000 perm   198 sec   (2319 perm/sec)   p_kst 5.869413e-01   p_cons 1.815217e-03   p_joint 6.141304e-03

Joint ci ratio: 7.270645e-02	ci left: 5.923252e-03	ci right 6.372231e-03	k: 2888	n:470000
Cons ci ratio: 1.337042e-01	ci left: 1.703453e-03	ci right 1.949561e-03	k: 857	n:470000
KS ci ratio: 4.797468e-03	ci left: 5.854566e-01	ci right 5.882742e-01	k: 275827	n:470000
FKBP6   470000 perm   205 sec   (2297 perm/sec)   p_kst 5.868660e-01   p_cons 1.823404e-03   p_joint 6.144681e-03

Joint ci ratio: 6.778656e-02	ci left: 6.684145e-03	ci right 7.155170e-03	k: 3320	n:480000
Cons ci ratio: 1.323992e-01	ci left: 1.702202e-03	ci right 1.945541e-03	k: 874	n:480000
KS ci ratio: 4.747021e-03	ci left: 5.854930e-01	ci right 5.882810e-01	k: 281706	n:480000
FKBP6   480000 perm   211 sec   (2275 perm/sec)   p_kst 5.868875e-01   p_cons 1.820833e-03   p_joint 6.916667e-03

Joint ci ratio: 6.957489e-02	ci left: 6.212717e-03	ci right 6.662536e-03	k: 3153	n:490000
Cons ci ratio: 1.313531e-01	ci left: 1.695092e-03	ci right 1.935350e-03	k: 888	n:490000
KS ci ratio: 4.697658e-03	ci left: 5.855770e-01	ci right 5.883363e-01	k: 287609	n:490000
FKBP6   490000 perm   218 sec   (2253 perm/sec)   p_kst 5.869571e-01   p_cons 1.812245e-03   p_joint 6.434694e-03

Joint ci ratio: 6.915045e-02	ci left: 6.165105e-03	ci right 6.608644e-03	k: 3192	n:500000
Cons ci ratio: 1.304763e-01	ci left: 1.684404e-03	ci right 1.921429e-03	k: 900	n:500000
KS ci ratio: 4.650877e-03	ci left: 5.855457e-01	ci right 5.882773e-01	k: 293456	n:500000
FKBP6   500000 perm   224 sec   (2231 perm/sec)   p_kst 5.869120e-01   p_cons 1.800000e-03   p_joint 6.384000e-03

Joint ci ratio: 6.846767e-02	ci left: 6.167552e-03	ci right 6.606712e-03	k: 3256	n:510000
Cons ci ratio: 1.293332e-01	ci left: 1.681729e-03	ci right 1.916146e-03	k: 916	n:510000
KS ci ratio: 4.605318e-03	ci left: 5.855315e-01	ci right 5.882362e-01	k: 299311	n:510000
FKBP6   510000 perm   231 sec   (2211 perm/sec)   p_kst 5.868843e-01   p_cons 1.796078e-03   p_joint 6.384314e-03

Joint ci ratio: 6.811505e-02	ci left: 6.113207e-03	ci right 6.546167e-03	k: 3290	n:520000
Cons ci ratio: 1.286348e-01	ci left: 1.667997e-03	ci right 1.899149e-03	k: 926	n:520000
KS ci ratio: 4.560963e-03	ci left: 5.855295e-01	ci right 5.882080e-01	k: 305172	n:520000
FKBP6   520000 perm   237 sec   (2191 perm/sec)   p_kst 5.868692e-01   p_cons 1.780769e-03   p_joint 6.326923e-03

Joint ci ratio: 6.273356e-02	ci left: 7.083715e-03	ci right 7.544337e-03	k: 3875	n:530000
Cons ci ratio: 1.276068e-01	ci left: 1.663920e-03	ci right 1.892524e-03	k: 941	n:530000
KS ci ratio: 4.517408e-03	ci left: 5.855767e-01	ci right 5.882299e-01	k: 311059	n:530000
FKBP6   530000 perm   244 sec   (2172 perm/sec)   p_kst 5.869038e-01   p_cons 1.775472e-03   p_joint 7.311321e-03

Joint ci ratio: 5.663259e-02	ci left: 8.545309e-03	ci right 9.045168e-03	k: 4748	n:540000
Cons ci ratio: 1.266695e-01	ci left: 1.658208e-03	ci right 1.884228e-03	k: 955	n:540000
KS ci ratio: 4.474736e-03	ci left: 5.856594e-01	ci right 5.882878e-01	k: 316966	n:540000
FKBP6   540000 perm   251 sec   (2153 perm/sec)   p_kst 5.869741e-01   p_cons 1.768519e-03   p_joint 8.792593e-03

Joint ci ratio: 5.632100e-02	ci left: 8.484935e-03	ci right 8.978443e-03	k: 4801	n:550000
Cons ci ratio: 1.251721e-01	ci left: 1.668560e-03	ci right 1.893104e-03	k: 978	n:550000
KS ci ratio: 4.433368e-03	ci left: 5.857265e-01	ci right 5.883308e-01	k: 322866	n:550000
FKBP6   550000 perm   258 sec   (2134 perm/sec)   p_kst 5.870291e-01   p_cons 1.778182e-03   p_joint 8.729091e-03

Joint ci ratio: 5.586378e-02	ci left: 8.472510e-03	ci right 8.961165e-03	k: 4880	n:560000
Cons ci ratio: 1.240993e-01	ci left: 1.668175e-03	ci right 1.890601e-03	k: 995	n:560000
KS ci ratio: 4.394145e-03	ci left: 5.856787e-01	ci right 5.882597e-01	k: 328703	n:560000
FKBP6   560000 perm   265 sec   (2115 perm/sec)   p_kst 5.869696e-01   p_cons 1.776786e-03   p_joint 8.714286e-03

Joint ci ratio: 5.544571e-02	ci left: 8.451884e-03	ci right 8.935585e-03	k: 4954	n:570000
Cons ci ratio: 1.228716e-01	ci left: 1.672913e-03	ci right 1.893604e-03	k: 1015	n:570000
KS ci ratio: 4.354841e-03	ci left: 5.857556e-01	ci right 5.883137e-01	k: 334610	n:570000
FKBP6   570000 perm   272 sec   (2096 perm/sec)   p_kst 5.870351e-01   p_cons 1.780702e-03   p_joint 8.691228e-03

Joint ci ratio: 5.549511e-02	ci left: 8.292542e-03	ci right 8.767559e-03	k: 4946	n:580000
Cons ci ratio: 1.219156e-01	ci left: 1.670811e-03	ci right 1.889386e-03	k: 1031	n:580000
KS ci ratio: 4.315791e-03	ci left: 5.859178e-01	ci right 5.884537e-01	k: 340568	n:580000
FKBP6   580000 perm   279 sec   (2078 perm/sec)   p_kst 5.871862e-01   p_cons 1.777586e-03   p_joint 8.527586e-03

Joint ci ratio: 5.510178e-02	ci left: 8.270663e-03	ci right 8.740962e-03	k: 5017	n:590000
Cons ci ratio: 1.210394e-01	ci left: 1.667143e-03	ci right 1.883558e-03	k: 1046	n:590000
KS ci ratio: 4.278475e-03	ci left: 5.859950e-01	ci right 5.885092e-01	k: 346479	n:590000
FKBP6   590000 perm   286 sec   (2059 perm/sec)   p_kst 5.872525e-01   p_cons 1.772881e-03   p_joint 8.503390e-03

Joint ci ratio: 5.483091e-02	ci left: 8.215000e-03	ci right 8.679765e-03	k: 5067	n:600000
Cons ci ratio: 1.206379e-01	ci left: 1.650671e-03	ci right 1.864186e-03	k: 1053	n:600000
KS ci ratio: 4.243977e-03	ci left: 5.858563e-01	ci right 5.883495e-01	k: 352262	n:600000
FKBP6   600000 perm   294 sec   (2041 perm/sec)   p_kst 5.871033e-01   p_cons 1.755000e-03   p_joint 8.445000e-03

Joint ci ratio: 5.592435e-02	ci left: 7.766648e-03	ci right 8.215093e-03	k: 4873	n:610000
Cons ci ratio: 1.195649e-01	ci left: 1.653823e-03	ci right 1.865708e-03	k: 1072	n:610000
KS ci ratio: 4.209033e-03	ci left: 5.858681e-01	ci right 5.883409e-01	k: 358134	n:610000
FKBP6   610000 perm   301 sec   (2024 perm/sec)   p_kst 5.871049e-01   p_cons 1.757377e-03   p_joint 7.988525e-03

Joint ci ratio: 5.549355e-02	ci left: 7.762252e-03	ci right 8.206880e-03	k: 4949	n:620000
Cons ci ratio: 1.186289e-01	ci left: 1.653751e-03	ci right 1.863852e-03	k: 1089	n:620000
KS ci ratio: 4.175008e-03	ci left: 5.858716e-01	ci right 5.883243e-01	k: 364001	n:620000
FKBP6   620000 perm   309 sec   (2007 perm/sec)   p_kst 5.870984e-01   p_cons 1.756452e-03   p_joint 7.982258e-03

Joint ci ratio: 5.424104e-02	ci left: 7.999139e-03	ci right 8.446671e-03	k: 5179	n:630000
Cons ci ratio: 1.179817e-01	ci left: 1.645984e-03	ci right 1.853879e-03	k: 1101	n:630000
KS ci ratio: 4.143815e-03	ci left: 5.856385e-01	ci right 5.880718e-01	k: 369719	n:630000
FKBP6   630000 perm   317 sec   (1990 perm/sec)   p_kst 5.868556e-01   p_cons 1.747619e-03   p_joint 8.220635e-03

Joint ci ratio: 5.435575e-02	ci left: 7.841768e-03	ci right 8.281452e-03	k: 5158	n:640000
Cons ci ratio: 1.170821e-01	ci left: 1.646047e-03	ci right 1.852255e-03	k: 1118	n:640000
KS ci ratio: 4.110421e-03	ci left: 5.857535e-01	ci right 5.881676e-01	k: 375655	n:640000
FKBP6   640000 perm   324 sec   (1973 perm/sec)   p_kst 5.869609e-01   p_cons 1.746875e-03   p_joint 8.059375e-03

Joint ci ratio: 5.162954e-02	ci left: 8.563745e-03	ci right 9.019111e-03	k: 5713	n:650000
Cons ci ratio: 1.159984e-01	ci left: 1.652090e-03	ci right 1.857007e-03	k: 1139	n:650000
KS ci ratio: 4.078467e-03	ci left: 5.857880e-01	ci right 5.881835e-01	k: 381541	n:650000
FKBP6   650000 perm   332 sec   (1957 perm/sec)   p_kst 5.869862e-01   p_cons 1.752308e-03   p_joint 8.789231e-03

Joint ci ratio: 5.130346e-02	ci left: 8.543171e-03	ci right 8.994490e-03	k: 5786	n:660000
Cons ci ratio: 1.154937e-01	ci left: 1.641770e-03	ci right 1.844461e-03	k: 1149	n:660000
KS ci ratio: 4.047438e-03	ci left: 5.857989e-01	ci right 5.881761e-01	k: 387412	n:660000
FKBP6   660000 perm   340 sec   (1941 perm/sec)   p_kst 5.869879e-01   p_cons 1.740909e-03   p_joint 8.766667e-03

Joint ci ratio: 5.152282e-02	ci left: 8.344919e-03	ci right 8.787704e-03	k: 5738	n:670000
Cons ci ratio: 1.143553e-01	ci left: 1.650608e-03	ci right 1.852246e-03	k: 1172	n:670000
KS ci ratio: 4.016586e-03	ci left: 5.858722e-01	ci right 5.882316e-01	k: 393325	n:670000
FKBP6   670000 perm   348 sec   (1925 perm/sec)   p_kst 5.870522e-01   p_cons 1.749254e-03   p_joint 8.564179e-03

Joint ci ratio: 5.144029e-02	ci left: 8.249771e-03	ci right 8.686785e-03	k: 5757	n:680000
Cons ci ratio: 1.134878e-01	ci left: 1.652051e-03	ci right 1.852232e-03	k: 1190	n:680000
KS ci ratio: 3.987760e-03	ci left: 5.857815e-01	ci right 5.881236e-01	k: 399128	n:680000
FKBP6   680000 perm   357 sec   (1907 perm/sec)   p_kst 5.869529e-01   p_cons 1.750000e-03   p_joint 8.466176e-03

Joint ci ratio: 5.109121e-02	ci left: 8.243233e-03	ci right 8.676851e-03	k: 5836	n:690000
Cons ci ratio: 1.127332e-01	ci left: 1.650641e-03	ci right 1.849232e-03	k: 1206	n:690000
KS ci ratio: 3.958374e-03	ci left: 5.858371e-01	ci right 5.881621e-01	k: 405030	n:690000
FKBP6   690000 perm   365 sec   (1890 perm/sec)   p_kst 5.870000e-01   p_cons 1.747826e-03   p_joint 8.457971e-03

Joint ci ratio: 5.093616e-02	ci left: 8.176238e-03	ci right 8.604988e-03	k: 5872	n:700000
Cons ci ratio: 1.117649e-01	ci left: 1.656218e-03	ci right 1.853656e-03	k: 1227	n:700000
KS ci ratio: 3.929905e-03	ci left: 5.858569e-01	ci right 5.881652e-01	k: 410908	n:700000
FKBP6   700000 perm   373 sec   (1874 perm/sec)   p_kst 5.870114e-01   p_cons 1.752857e-03   p_joint 8.388571e-03

Joint ci ratio: 5.100053e-02	ci left: 8.041599e-03	ci right 8.463837e-03	k: 5858	n:710000
Cons ci ratio: 1.108655e-01	ci left: 1.660276e-03	ci right 1.856501e-03	k: 1247	n:710000
KS ci ratio: 3.901714e-03	ci left: 5.859171e-01	ci right 5.882090e-01	k: 416815	n:710000
FKBP6   710000 perm   382 sec   (1859 perm/sec)   p_kst 5.870634e-01   p_cons 1.756338e-03   p_joint 8.250704e-03

Joint ci ratio: 5.060443e-02	ci left: 8.056066e-03	ci right 8.475683e-03	k: 5950	n:720000
Cons ci ratio: 1.099007e-01	ci left: 1.666929e-03	ci right 1.862115e-03	k: 1269	n:720000
KS ci ratio: 3.875275e-03	ci left: 5.858311e-01	ci right 5.881071e-01	k: 422618	n:720000
FKBP6   720000 perm   390 sec   (1844 perm/sec)   p_kst 5.869694e-01   p_cons 1.762500e-03   p_joint 8.263889e-03

Joint ci ratio: 4.986500e-02	ci left: 8.185143e-03	ci right 8.605074e-03	k: 6127	n:730000
Cons ci ratio: 1.092150e-01	ci left: 1.665411e-03	ci right 1.859125e-03	k: 1285	n:730000
KS ci ratio: 3.848724e-03	ci left: 5.858284e-01	ci right 5.880887e-01	k: 428480	n:730000
FKBP6   730000 perm   399 sec   (1829 perm/sec)   p_kst 5.869589e-01   p_cons 1.760274e-03   p_joint 8.393151e-03

Joint ci ratio: 4.956696e-02	ci left: 8.173288e-03	ci right 8.590034e-03	k: 6201	n:740000
Cons ci ratio: 1.085420e-01	ci left: 1.663938e-03	ci right 1.856212e-03	k: 1301	n:740000
KS ci ratio: 3.823319e-03	ci left: 5.857487e-01	ci right 5.879938e-01	k: 434285	n:740000
FKBP6   740000 perm   408 sec   (1815 perm/sec)   p_kst 5.868716e-01   p_cons 1.758108e-03   p_joint 8.379730e-03

Joint ci ratio: 4.920704e-02	ci left: 8.184147e-03	ci right 8.598330e-03	k: 6292	n:750000
Cons ci ratio: 1.072715e-01	ci left: 1.681971e-03	ci right 1.873910e-03	k: 1332	n:750000
KS ci ratio: 3.797992e-03	ci left: 5.857246e-01	ci right 5.879547e-01	k: 440130	n:750000
FKBP6   750000 perm   416 sec   (1801 perm/sec)   p_kst 5.868400e-01   p_cons 1.776000e-03   p_joint 8.389333e-03

Joint ci ratio: 4.911935e-02	ci left: 8.106344e-03	ci right 8.515838e-03	k: 6315	n:760000
Cons ci ratio: 1.068719e-01	ci left: 1.672645e-03	ci right 1.862764e-03	k: 1342	n:760000
KS ci ratio: 3.772599e-03	ci left: 5.857736e-01	ci right 5.879889e-01	k: 446030	n:760000
FKBP6   760000 perm   425 sec   (1788 perm/sec)   p_kst 5.868816e-01   p_cons 1.765789e-03   p_joint 8.309211e-03

Joint ci ratio: 4.776075e-02	ci left: 8.465540e-03	ci right 8.881026e-03	k: 6677	n:770000
Cons ci ratio: 1.063195e-01	ci left: 1.668619e-03	ci right 1.857239e-03	k: 1356	n:770000
KS ci ratio: 3.748140e-03	ci left: 5.857654e-01	ci right 5.879664e-01	k: 451887	n:770000
FKBP6   770000 perm   434 sec   (1774 perm/sec)   p_kst 5.868662e-01   p_cons 1.761039e-03   p_joint 8.671429e-03

Joint ci ratio: 4.793750e-02	ci left: 8.296188e-03	ci right 8.704910e-03	k: 6629	n:780000
Cons ci ratio: 1.054677e-01	ci left: 1.674685e-03	ci right 1.862379e-03	k: 1378	n:780000
KS ci ratio: 3.723984e-03	ci left: 5.857794e-01	ci right 5.879661e-01	k: 457761	n:780000
FKBP6   780000 perm   443 sec   (1761 perm/sec)   p_kst 5.868731e-01   p_cons 1.766667e-03   p_joint 8.498718e-03

Joint ci ratio: 4.761883e-02	ci left: 8.302486e-03	ci right 8.708725e-03	k: 6718	n:790000
Cons ci ratio: 1.046735e-01	ci left: 1.679371e-03	ci right 1.866085e-03	k: 1399	n:790000
KS ci ratio: 3.699593e-03	ci left: 5.858842e-01	ci right 5.880570e-01	k: 463707	n:790000
FKBP6   790000 perm   452 sec   (1748 perm/sec)   p_kst 5.869709e-01   p_cons 1.770886e-03   p_joint 8.503797e-03

Joint ci ratio: 4.734151e-02	ci left: 8.296282e-03	ci right 8.699789e-03	k: 6797	n:800000
Cons ci ratio: 1.037872e-01	ci left: 1.687597e-03	ci right 1.873541e-03	k: 1423	n:800000
KS ci ratio: 3.676736e-03	ci left: 5.858463e-01	ci right 5.880055e-01	k: 469541	n:800000
FKBP6   800000 perm   461 sec   (1735 perm/sec)   p_kst 5.869262e-01   p_cons 1.778750e-03   p_joint 8.496250e-03

Joint ci ratio: 4.698980e-02	ci left: 8.318302e-03	ci right 8.719793e-03	k: 6899	n:810000
Cons ci ratio: 1.032451e-01	ci left: 1.684801e-03	ci right 1.869408e-03	k: 1438	n:810000
KS ci ratio: 3.654140e-03	ci left: 5.858305e-01	ci right 5.879763e-01	k: 475392	n:810000
FKBP6   810000 perm   470 sec   (1723 perm/sec)   p_kst 5.869037e-01   p_cons 1.775309e-03   p_joint 8.517284e-03

Joint ci ratio: 4.668617e-02	ci left: 8.325331e-03	ci right 8.724494e-03	k: 6989	n:820000
Cons ci ratio: 1.026759e-01	ci left: 1.683264e-03	ci right 1.866625e-03	k: 1454	n:820000
KS ci ratio: 3.631462e-03	ci left: 5.858809e-01	ci right 5.880136e-01	k: 481297	n:820000
FKBP6   820000 perm   479 sec   (1711 perm/sec)   p_kst 5.869476e-01   p_cons 1.773171e-03   p_joint 8.523171e-03

Joint ci ratio: 4.638505e-02	ci left: 8.333389e-03	ci right 8.730293e-03	k: 7080	n:830000
Cons ci ratio: 1.019773e-01	ci left: 1.686464e-03	ci right 1.868849e-03	k: 1474	n:830000
KS ci ratio: 3.609811e-03	ci left: 5.858482e-01	ci right 5.879680e-01	k: 487134	n:830000
FKBP6   830000 perm   489 sec   (1699 perm/sec)   p_kst 5.869084e-01   p_cons 1.775904e-03   p_joint 8.530120e-03

Joint ci ratio: 4.614487e-02	ci left: 8.321257e-03	ci right 8.715477e-03	k: 7154	n:840000
Cons ci ratio: 1.012928e-01	ci left: 1.689591e-03	ci right 1.871015e-03	k: 1494	n:840000
KS ci ratio: 3.587881e-03	ci left: 5.859057e-01	ci right 5.880128e-01	k: 493046	n:840000
FKBP6   840000 perm   498 sec   (1687 perm/sec)   p_kst 5.869595e-01   p_cons 1.778571e-03   p_joint 8.516667e-03

Joint ci ratio: 4.578717e-02	ci left: 8.353613e-03	ci right 8.746217e-03	k: 7266	n:850000
Cons ci ratio: 1.006551e-01	ci left: 1.691502e-03	ci right 1.871920e-03	k: 1513	n:850000
KS ci ratio: 3.566598e-03	ci left: 5.859277e-01	ci right 5.880223e-01	k: 498929	n:850000
FKBP6   850000 perm   507 sec   (1675 perm/sec)   p_kst 5.869753e-01   p_cons 1.780000e-03   p_joint 8.548235e-03

Joint ci ratio: 4.546874e-02	ci left: 8.373732e-03	ci right 8.764473e-03	k: 7368	n:860000
Cons ci ratio: 9.983379e-02	ci left: 1.700175e-03	ci right 1.879951e-03	k: 1538	n:860000
KS ci ratio: 3.545569e-03	ci left: 5.859655e-01	ci right 5.880479e-01	k: 504826	n:860000
FKBP6   860000 perm   517 sec   (1663 perm/sec)   p_kst 5.870070e-01   p_cons 1.788372e-03   p_joint 8.567442e-03

Outputting figure to mutsig2_images.part000000000065/FKBP6.6_1062_860000_0.58701_0.0017884_0.0085674.png
                gene_name: FKBP6
               theta_stop: 0.100 
                    nperm: 860000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0084 
    ci_joint_bounds_right: 0.0088 

Current progress: 35 percent done.
FGFR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 4.928435e-02	ci left: 3.778359e-01	ci right 3.970298e-01	k: 3874	n:10000
FGFR1   10000 perm   2 sec   (4771 perm/sec)   p_kst 3.874000e-01   p_cons 4.160000e-02   p_joint 1.251000e-01

Joint ci ratio: 6.582755e-02	ci left: 1.456199e-01	ci right 1.555819e-01	k: 3011	n:20000
Cons ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
KS ci ratio: 3.398032e-02	ci left: 3.927019e-01	ci right 4.063273e-01	k: 7990	n:20000
FGFR1   20000 perm   5 sec   (4287 perm/sec)   p_kst 3.995000e-01   p_cons 3.750000e-02   p_joint 1.505500e-01

Joint ci ratio: 4.152321e-02	ci left: 2.242549e-01	ci right 2.337976e-01	k: 6870	n:30000
Cons ci ratio: 1.145520e-01	ci left: 3.541081e-02	ci right 3.974600e-02	k: 1126	n:30000
KS ci ratio: 2.762848e-02	ci left: 3.959793e-01	ci right 4.071064e-01	k: 12046	n:30000
FGFR1   30000 perm   7 sec   (4067 perm/sec)   p_kst 4.015333e-01   p_cons 3.753333e-02   p_joint 2.290000e-01

Joint ci ratio: 4.100575e-02	ci left: 1.821476e-01	ci right 1.897980e-01	k: 7438	n:40000
Cons ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
KS ci ratio: 2.383343e-02	ci left: 3.986120e-01	ci right 4.082520e-01	k: 16137	n:40000
FGFR1   40000 perm   10 sec   (3961 perm/sec)   p_kst 4.034250e-01   p_cons 3.652500e-02   p_joint 1.859500e-01

Joint ci ratio: 3.446146e-02	ci left: 2.020251e-01	ci right 2.091292e-01	k: 10278	n:50000
Cons ci ratio: 9.035222e-02	ci left: 3.463843e-02	ci right 3.793569e-02	k: 1813	n:50000
KS ci ratio: 2.133187e-02	ci left: 3.987962e-01	ci right 4.074150e-01	k: 20155	n:50000
FGFR1   50000 perm   13 sec   (3860 perm/sec)   p_kst 4.031000e-01   p_cons 3.626000e-02   p_joint 2.055600e-01

Outputting figure to mutsig2_images.part000000000065/FGFR1.5_2951_50000_0.4031_0.03626_0.20556.png
                gene_name: FGFR1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
FHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
FHL5   10000 perm   2 sec   (5769 perm/sec)   p_kst 1.309000e-01   p_cons 6.440000e-02   p_joint 9.540000e-02

Joint ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
Cons ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
KS ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
FHL5   20000 perm   4 sec   (4898 perm/sec)   p_kst 1.309000e-01   p_cons 6.405000e-02   p_joint 1.096500e-01

Joint ci ratio: 7.319263e-02	ci left: 8.406367e-02	ci right 9.048318e-02	k: 2617	n:30000
Cons ci ratio: 8.737952e-02	ci left: 6.011316e-02	ci right 6.563853e-02	k: 1885	n:30000
KS ci ratio: 5.811154e-02	ci left: 1.278596e-01	ci right 1.355452e-01	k: 3950	n:30000
FHL5   30000 perm   6 sec   (4655 perm/sec)   p_kst 1.316667e-01   p_cons 6.283333e-02   p_joint 8.723333e-02

Outputting figure to mutsig2_images.part000000000065/FHL5.5_875_30000_0.13167_0.062833_0.087233.png
                gene_name: FHL5
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 39 percent done.
FKBP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
FKBP9   10000 perm   2 sec   (5270 perm/sec)   p_kst 2.391000e-01   p_cons 8.452000e-01   p_joint 3.614000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP9.5_1753_10000_0.2391_0.8452_0.3614.png
                gene_name: FKBP9
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 40 percent done.
FLJ43860
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
Cons ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
FLJ43860   10000 perm   2 sec   (4596 perm/sec)   p_kst 2.146000e-01   p_cons 2.020000e-01   p_joint 1.850000e-01

Outputting figure to mutsig2_images.part000000000065/FLJ43860.5_4077_10000_0.2146_0.202_0.185.png
                gene_name: FLJ43860
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
FGGY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
Cons ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
KS ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
FGGY   10000 perm   2 sec   (5200 perm/sec)   p_kst 6.123000e-01   p_cons 1.697000e-01   p_joint 4.203000e-01

Outputting figure to mutsig2_images.part000000000065/FGGY.4_1792_10000_0.6123_0.1697_0.4203.png
                gene_name: FGGY
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 44 percent done.
FGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
Cons ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
FGL2   10000 perm   2 sec   (5863 perm/sec)   p_kst 5.970000e-02   p_cons 7.573000e-01   p_joint 1.122000e-01

Joint ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
Cons ci ratio: 1.569596e-02	ci left: 7.511955e-01	ci right 7.631297e-01	k: 15144	n:20000
KS ci ratio: 1.111467e-01	ci left: 5.528683e-02	ci right 6.184224e-02	k: 1170	n:20000
FGL2   20000 perm   4 sec   (5214 perm/sec)   p_kst 5.850000e-02   p_cons 7.572000e-01   p_joint 1.257500e-01

Joint ci ratio: 7.403225e-02	ci left: 8.229385e-02	ci right 8.865336e-02	k: 2563	n:30000
Cons ci ratio: 1.281572e-02	ci left: 7.523066e-01	ci right 7.620435e-01	k: 22716	n:30000
KS ci ratio: 8.777750e-02	ci left: 5.959078e-02	ci right 6.509435e-02	k: 1869	n:30000
FGL2   30000 perm   6 sec   (4943 perm/sec)   p_kst 6.230000e-02   p_cons 7.572000e-01   p_joint 8.543333e-02

Outputting figure to mutsig2_images.part000000000065/FGL2.4_1328_30000_0.0623_0.7572_0.085433.png
                gene_name: FGL2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 46 percent done.
FHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
FHL1   10000 perm   2 sec   (5954 perm/sec)   p_kst 2.621000e-01   p_cons 4.729000e-01   p_joint 3.783000e-01

Outputting figure to mutsig2_images.part000000000065/FHL1.4_1184_10000_0.2621_0.4729_0.3783.png
                gene_name: FHL1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 47 percent done.
FHOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
Cons ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
FHOD1   10000 perm   2 sec   (4734 perm/sec)   p_kst 5.160000e-02   p_cons 6.990000e-02   p_joint 2.070000e-02

Joint ci ratio: 1.818703e-01	ci left: 2.063260e-02	ci right 2.480776e-02	k: 453	n:20000
Cons ci ratio: 9.823020e-02	ci left: 7.011604e-02	ci right 7.740846e-02	k: 1474	n:20000
KS ci ratio: 1.193816e-01	ci left: 4.808865e-02	ci right 5.424267e-02	k: 1022	n:20000
FHOD1   20000 perm   5 sec   (4320 perm/sec)   p_kst 5.110000e-02   p_cons 7.370000e-02   p_joint 2.265000e-02

Joint ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
Cons ci ratio: 7.978742e-02	ci left: 7.148785e-02	ci right 7.746153e-02	k: 2233	n:30000
KS ci ratio: 9.913765e-02	ci left: 4.707254e-02	ci right 5.201516e-02	k: 1485	n:30000
FHOD1   30000 perm   7 sec   (4155 perm/sec)   p_kst 4.950000e-02   p_cons 7.443333e-02   p_joint 3.050000e-02

Joint ci ratio: 1.258645e-01	ci left: 2.218301e-02	ci right 2.518668e-02	k: 946	n:40000
Cons ci ratio: 6.880742e-02	ci left: 7.246183e-02	ci right 7.765006e-02	k: 3001	n:40000
KS ci ratio: 8.487653e-02	ci left: 4.847227e-02	ci right 5.279327e-02	k: 2024	n:40000
FHOD1   40000 perm   10 sec   (4033 perm/sec)   p_kst 5.060000e-02   p_cons 7.502500e-02   p_joint 2.365000e-02

Joint ci ratio: 8.491377e-02	ci left: 3.914149e-02	ci right 4.263207e-02	k: 2043	n:50000
Cons ci ratio: 6.148581e-02	ci left: 7.286377e-02	ci right 7.750570e-02	k: 3758	n:50000
KS ci ratio: 7.361994e-02	ci left: 5.168110e-02	ci right 5.565092e-02	k: 2682	n:50000
FHOD1   50000 perm   13 sec   (3936 perm/sec)   p_kst 5.364000e-02   p_cons 7.516000e-02   p_joint 4.086000e-02

Outputting figure to mutsig2_images.part000000000065/FHOD1.4_3583_50000_0.05364_0.07516_0.04086.png
                gene_name: FHOD1
               theta_stop: 0.085 
                    nperm: 50000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 49 percent done.
FIBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
FIBP   10000 perm   2 sec   (5833 perm/sec)   p_kst 2.168000e-01   p_cons 2.120000e-02   p_joint 1.220000e-01

Joint ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
Cons ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
KS ci ratio: 5.189704e-02	ci left: 2.161570e-01	ci right 2.277240e-01	k: 4438	n:20000
FIBP   20000 perm   4 sec   (5261 perm/sec)   p_kst 2.219000e-01   p_cons 2.215000e-02   p_joint 1.107500e-01

Joint ci ratio: 7.121357e-02	ci left: 8.845720e-02	ci right 9.502211e-02	k: 2751	n:30000
Cons ci ratio: 1.504302e-01	ci left: 2.046620e-02	ci right 2.382722e-02	k: 663	n:30000
KS ci ratio: 4.247846e-02	ci left: 2.163815e-01	ci right 2.258059e-01	k: 6632	n:30000
FIBP   30000 perm   6 sec   (5023 perm/sec)   p_kst 2.210667e-01   p_cons 2.210000e-02   p_joint 9.170000e-02

Joint ci ratio: 6.326452e-02	ci left: 8.479770e-02	ci right 9.036235e-02	k: 3502	n:40000
Cons ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
KS ci ratio: 3.693767e-02	ci left: 2.156256e-01	ci right 2.237652e-01	k: 8787	n:40000
FIBP   40000 perm   8 sec   (4867 perm/sec)   p_kst 2.196750e-01   p_cons 2.297500e-02   p_joint 8.755000e-02

Joint ci ratio: 5.319086e-02	ci left: 9.536784e-02	ci right 1.005989e-01	k: 4898	n:50000
Cons ci ratio: 1.015479e-01	ci left: 2.746851e-02	ci right 3.042652e-02	k: 1446	n:50000
KS ci ratio: 3.360722e-02	ci left: 2.102926e-01	ci right 2.175007e-01	k: 10694	n:50000
FIBP   50000 perm   11 sec   (4747 perm/sec)   p_kst 2.138800e-01   p_cons 2.892000e-02   p_joint 9.796000e-02

Joint ci ratio: 4.650407e-02	ci left: 1.034156e-01	ci right 1.083559e-01	k: 6352	n:60000
Cons ci ratio: 9.243742e-02	ci left: 2.775324e-02	ci right 3.045923e-02	k: 1745	n:60000
KS ci ratio: 2.998035e-02	ci left: 2.184146e-01	ci right 2.250790e-01	k: 13304	n:60000
FIBP   60000 perm   13 sec   (4638 perm/sec)   p_kst 2.217333e-01   p_cons 2.908333e-02   p_joint 1.058667e-01

Outputting figure to mutsig2_images.part000000000065/FIBP.4_1135_60000_0.22173_0.029083_0.10587.png
                gene_name: FIBP
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
FIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
FIZ1   10000 perm   2 sec   (6222 perm/sec)   p_kst 4.115000e-01   p_cons 6.318000e-01   p_joint 6.428000e-01

Outputting figure to mutsig2_images.part000000000065/FIZ1.4_1499_10000_0.4115_0.6318_0.6428.png
                gene_name: FIZ1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 53 percent done.
FLRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
KS ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
FLRT2   10000 perm   2 sec   (5123 perm/sec)   p_kst 8.390000e-01   p_cons 5.046000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLRT2.4_1987_10000_0.839_0.5046_1.png
                gene_name: FLRT2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
FGFBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
Cons ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
FGFBP2   10000 perm   2 sec   (6296 perm/sec)   p_kst 9.739000e-01   p_cons 1.715000e-01   p_joint 3.294000e-01

Outputting figure to mutsig2_images.part000000000065/FGFBP2.3_676_10000_0.9739_0.1715_0.3294.png
                gene_name: FGFBP2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 56 percent done.
FGFR1OP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
KS ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
FGFR1OP   10000 perm   2 sec   (5886 perm/sec)   p_kst 6.040000e-01   p_cons 1.679000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR1OP.3_1252_10000_0.604_0.1679_0.4856.png
                gene_name: FGFR1OP
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 58 percent done.
FGFR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
KS ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
FGFR4   10000 perm   2 sec   (5209 perm/sec)   p_kst 7.262000e-01   p_cons 7.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGFR4.3_2547_10000_0.7262_0.7216_1.png
                gene_name: FGFR4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
FIBIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.043147e-02	ci left: 2.281004e-01	ci right 2.448534e-01	k: 2364	n:10000
Cons ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
KS ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
FIBIN   10000 perm   2 sec   (6276 perm/sec)   p_kst 1.579000e-01   p_cons 9.780000e-01   p_joint 2.364000e-01

Outputting figure to mutsig2_images.part000000000065/FIBIN.3_640_10000_0.1579_0.978_0.2364.png
                gene_name: FIBIN
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 61 percent done.
FIP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
Cons ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
FIP1L1   10000 perm   2 sec   (5559 perm/sec)   p_kst 1.447000e-01   p_cons 7.687000e-01   p_joint 2.849000e-01

Outputting figure to mutsig2_images.part000000000065/FIP1L1.3_1888_10000_0.1447_0.7687_0.2849.png
                gene_name: FIP1L1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 63 percent done.
FKTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
Cons ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
KS ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
FKTN   10000 perm   2 sec   (6099 perm/sec)   p_kst 8.848000e-01   p_cons 1.447000e-01   p_joint 4.906000e-01

Outputting figure to mutsig2_images.part000000000065/FKTN.3_1422_10000_0.8848_0.1447_0.4906.png
                gene_name: FKTN
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 65 percent done.
FLAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.693164e-02	ci left: 5.198600e-01	ci right 5.395227e-01	k: 5297	n:10000
KS ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
FLAD1   10000 perm   2 sec   (5541 perm/sec)   p_kst 7.461000e-01   p_cons 5.297000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLAD1.3_1936_10000_0.7461_0.5297_1.png
                gene_name: FLAD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FLJ10357
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
KS ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
FLJ10357   10000 perm   2 sec   (4394 perm/sec)   p_kst 7.456000e-01   p_cons 7.344000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLJ10357.3_4652_10000_0.7456_0.7344_1.png
                gene_name: FLJ10357
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
FGF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
Cons ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
KS ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
FGF4   10000 perm   1 sec   (7155 perm/sec)   p_kst 6.399000e-01   p_cons 2.403000e-01   p_joint 7.811000e-01

Outputting figure to mutsig2_images.part000000000065/FGF4.2_633_10000_0.6399_0.2403_0.7811.png
                gene_name: FGF4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 70 percent done.
FGF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
KS ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
FGF5   10000 perm   1 sec   (6667 perm/sec)   p_kst 8.089000e-01   p_cons 9.922000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGF5.2_819_10000_0.8089_0.9922_1.png
                gene_name: FGF5
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
FGFBP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 74 percent done.
FGFR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
Cons ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
KS ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
FGFR3   10000 perm   2 sec   (5533 perm/sec)   p_kst 4.043000e-01   p_cons 3.424000e-01   p_joint 6.538000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR3.2_2644_10000_0.4043_0.3424_0.6538.png
                gene_name: FGFR3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 75 percent done.
FGFRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
Cons ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
KS ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
FGFRL1   10000 perm   2 sec   (6445 perm/sec)   p_kst 1.384000e-01   p_cons 5.930000e-02   p_joint 1.182000e-01

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
KS ci ratio: 6.986361e-02	ci left: 1.312282e-01	ci right 1.407779e-01	k: 2719	n:20000
FGFRL1   20000 perm   4 sec   (5609 perm/sec)   p_kst 1.359500e-01   p_cons 5.830000e-02   p_joint 1.180000e-01

Joint ci ratio: 7.925208e-02	ci left: 7.240404e-02	ci right 7.841183e-02	k: 2261	n:30000
Cons ci ratio: 9.024786e-02	ci left: 5.649034e-02	ci right 6.186209e-02	k: 1774	n:30000
KS ci ratio: 5.747655e-02	ci left: 1.303617e-01	ci right 1.381093e-01	k: 4026	n:30000
FGFRL1   30000 perm   6 sec   (5300 perm/sec)   p_kst 1.342000e-01   p_cons 5.913333e-02   p_joint 7.536667e-02

Outputting figure to mutsig2_images.part000000000065/FGFRL1.2_1539_30000_0.1342_0.059133_0.075367.png
                gene_name: FGFRL1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 77 percent done.
FGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
KS ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
FGG   10000 perm   2 sec   (6230 perm/sec)   p_kst 2.751000e-01   p_cons 4.866000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGG.2_1417_10000_0.2751_0.4866_1.png
                gene_name: FGG
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
FGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
Cons ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
FGR   10000 perm   2 sec   (6284 perm/sec)   p_kst 4.863000e-01   p_cons 5.454000e-01   p_joint 4.989000e-01

Outputting figure to mutsig2_images.part000000000065/FGR.2_1634_10000_0.4863_0.5454_0.4989.png
                gene_name: FGR
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 81 percent done.
FIBCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KS ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
FIBCD1   10000 perm   2 sec   (6192 perm/sec)   p_kst 3.052000e-01   p_cons 4.950000e-02   p_joint 2.630000e-02

Joint ci ratio: 2.070849e-01	ci left: 1.577558e-02	ci right 1.946657e-02	k: 351	n:20000
Cons ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
KS ci ratio: 4.199545e-02	ci left: 2.970326e-01	ci right 3.098246e-01	k: 6068	n:20000
FIBCD1   20000 perm   4 sec   (5402 perm/sec)   p_kst 3.034000e-01   p_cons 3.195000e-02   p_joint 1.755000e-02

Joint ci ratio: 7.414297e-02	ci left: 8.206446e-02	ci right 8.841614e-02	k: 2556	n:30000
Cons ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
KS ci ratio: 3.428783e-02	ci left: 2.982335e-01	ci right 3.086712e-01	k: 9103	n:30000
FIBCD1   30000 perm   6 sec   (5065 perm/sec)   p_kst 3.034333e-01   p_cons 3.213333e-02   p_joint 8.520000e-02

Joint ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
Cons ci ratio: 1.082803e-01	ci left: 3.000463e-02	ci right 3.346379e-02	k: 1268	n:40000
KS ci ratio: 2.963922e-02	ci left: 2.997182e-01	ci right 3.087603e-01	k: 12169	n:40000
FIBCD1   40000 perm   8 sec   (4880 perm/sec)   p_kst 3.042250e-01   p_cons 3.170000e-02   p_joint 3.120000e-02

Joint ci ratio: 9.944430e-02	ci left: 2.863920e-02	ci right 3.165568e-02	k: 1506	n:50000
Cons ci ratio: 9.695171e-02	ci left: 3.012298e-02	ci right 3.321171e-02	k: 1582	n:50000
KS ci ratio: 2.647073e-02	ci left: 3.008264e-01	ci right 3.089163e-01	k: 15243	n:50000
FIBCD1   50000 perm   11 sec   (4741 perm/sec)   p_kst 3.048600e-01   p_cons 3.164000e-02   p_joint 3.012000e-02

Outputting figure to mutsig2_images.part000000000065/FIBCD1.2_1414_50000_0.30486_0.03164_0.03012.png
                gene_name: FIBCD1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 82 percent done.
FILIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
FILIP1L   10000 perm   2 sec   (4998 perm/sec)   p_kst 2.292000e-01   p_cons 2.851000e-01   p_joint 6.047000e-01

Outputting figure to mutsig2_images.part000000000065/FILIP1L.2_3449_10000_0.2292_0.2851_0.6047.png
                gene_name: FILIP1L
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 84 percent done.
FITM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.557553e-02	ci left: 6.923226e-01	ci right 7.103600e-01	k: 7014	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
FITM1   10000 perm   2 sec   (6577 perm/sec)   p_kst 4.911000e-01   p_cons 7.014000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FITM1.2_887_10000_0.4911_0.7014_1.png
                gene_name: FITM1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FKBP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
Cons ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
KS ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
FKBP11   10000 perm   1 sec   (6782 perm/sec)   p_kst 2.912000e-01   p_cons 6.275000e-01   p_joint 7.175000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP11.2_687_10000_0.2912_0.6275_0.7175.png
                gene_name: FKBP11
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
FKBP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
Cons ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
KS ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
FKBP15   10000 perm   2 sec   (5030 perm/sec)   p_kst 8.640000e-01   p_cons 2.488000e-01   p_joint 6.029000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP15.2_3772_10000_0.864_0.2488_0.6029.png
                gene_name: FKBP15
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 89 percent done.
FKBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
Cons ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
KS ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
FKBP3   10000 perm   1 sec   (6702 perm/sec)   p_kst 4.472000e-01   p_cons 4.230000e-02   p_joint 6.269000e-01

Joint ci ratio: 4.327639e-02	ci left: 2.845616e-01	ci right 2.971992e-01	k: 5817	n:20000
Cons ci ratio: 1.275416e-01	ci left: 4.221676e-02	ci right 4.801642e-02	k: 901	n:20000
KS ci ratio: 3.048102e-02	ci left: 4.456840e-01	ci right 4.595298e-01	k: 9052	n:20000
FKBP3   20000 perm   3 sec   (5797 perm/sec)   p_kst 4.526000e-01   p_cons 4.505000e-02   p_joint 2.908500e-01

Joint ci ratio: 1.717918e-02	ci left: 6.289543e-01	ci right 6.398864e-01	k: 19033	n:30000
Cons ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
KS ci ratio: 2.481815e-02	ci left: 4.483541e-01	ci right 4.596548e-01	k: 13620	n:30000
FKBP3   30000 perm   6 sec   (5450 perm/sec)   p_kst 4.540000e-01   p_cons 4.546667e-02   p_joint 6.344333e-01

Joint ci ratio: 1.488039e-02	ci left: 6.296082e-01	ci right 6.390723e-01	k: 25374	n:40000
Cons ci ratio: 8.923244e-02	ci left: 4.396760e-02	ci right 4.809862e-02	k: 1840	n:40000
KS ci ratio: 2.150429e-02	ci left: 4.488621e-01	ci right 4.586446e-01	k: 18150	n:40000
FKBP3   40000 perm   8 sec   (5223 perm/sec)   p_kst 4.537500e-01   p_cons 4.600000e-02   p_joint 6.343500e-01

Outputting figure to mutsig2_images.part000000000065/FKBP3.2_703_40000_0.45375_0.046_0.63435.png
                gene_name: FKBP3
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 91 percent done.
FKBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
Cons ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
KS ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
FKBP5   10000 perm   2 sec   (6234 perm/sec)   p_kst 8.634000e-01   p_cons 3.050000e-02   p_joint 4.830000e-02

Joint ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
Cons ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
KS ci ratio: 1.090906e-02	ci left: 8.610992e-01	ci right 8.705942e-01	k: 17318	n:20000
FKBP5   20000 perm   4 sec   (5403 perm/sec)   p_kst 8.659000e-01   p_cons 3.145000e-02   p_joint 5.385000e-02

Joint ci ratio: 9.280342e-02	ci left: 5.352247e-02	ci right 5.876390e-02	k: 1683	n:30000
Cons ci ratio: 1.221288e-01	ci left: 3.116896e-02	ci right 3.525542e-02	k: 995	n:30000
KS ci ratio: 8.958026e-03	ci left: 8.606426e-01	ci right 8.684200e-01	k: 25937	n:30000
FKBP5   30000 perm   6 sec   (5072 perm/sec)   p_kst 8.645667e-01   p_cons 3.316667e-02   p_joint 5.610000e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.055617e-01	ci left: 3.156317e-02	ci right 3.510500e-02	k: 1332	n:40000
KS ci ratio: 7.775705e-03	ci left: 8.606271e-01	ci right 8.673700e-01	k: 34561	n:40000
FKBP5   40000 perm   8 sec   (4901 perm/sec)   p_kst 8.640250e-01   p_cons 3.330000e-02   p_joint 5.670000e-02

Joint ci ratio: 7.154419e-02	ci left: 5.461001e-02	ci right 5.868166e-02	k: 2831	n:50000
Cons ci ratio: 9.398794e-02	ci left: 3.203766e-02	ci right 3.521679e-02	k: 1680	n:50000
KS ci ratio: 6.992138e-03	ci left: 8.597128e-01	ci right 8.657650e-01	k: 43138	n:50000
FKBP5   50000 perm   10 sec   (4762 perm/sec)   p_kst 8.627600e-01   p_cons 3.360000e-02   p_joint 5.662000e-02

Outputting figure to mutsig2_images.part000000000065/FKBP5.2_1472_50000_0.86276_0.0336_0.05662.png
                gene_name: FKBP5
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 93 percent done.
FLCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
KS ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
FLCN   10000 perm   2 sec   (5882 perm/sec)   p_kst 5.683000e-01   p_cons 1.809000e-01   p_joint 2.496000e-01

Outputting figure to mutsig2_images.part000000000065/FLCN.2_1942_10000_0.5683_0.1809_0.2496.png
                gene_name: FLCN
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 95 percent done.
FLII
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 1.476486e-02	ci left: 8.691762e-01	ci right 8.822040e-01	k: 8758	n:10000
FLII   10000 perm   2 sec   (4937 perm/sec)   p_kst 8.758000e-01   p_cons 2.272000e-01   p_joint 9.874000e-01

Outputting figure to mutsig2_images.part000000000065/FLII.2_3930_10000_0.8758_0.2272_0.9874.png
                gene_name: FLII
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
FLOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
FLOT1   10000 perm   2 sec   (6575 perm/sec)   p_kst 9.033000e-01   p_cons 3.900000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLOT1.2_1332_10000_0.9033_0.39_1.png
                gene_name: FLOT1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
FLT3LG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
Cons ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
KS ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
FLT3LG   10000 perm   1 sec   (6688 perm/sec)   p_kst 4.615000e-01   p_cons 8.947000e-01   p_joint 8.148000e-01

Outputting figure to mutsig2_images.part000000000065/FLT3LG.2_736_10000_0.4615_0.8947_0.8148.png
                gene_name: FLT3LG
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000065
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 65 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4421961: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000066> was used as the working directory.
Started at Wed Oct 24 17:46:30 2012
Results reported at Wed Oct 24 20:39:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000066.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000066.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 66  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000066.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10449.14 sec.
    Max Memory :      6906 MB
    Max Swap   :      9284 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
66
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 66
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 66: processing genes 5882 - 5971
Calculating significance of each gene.
Using projection method.
5882	FLYWCH1	1
5883	FLYWCH2	5.599961e-01
5884	FMN1	6.855391e-01
5885	FMN2	4.855188e-02
5886	FMNL1	1
5887	FMNL2	9.507461e-01
5888	FMNL3	9.524829e-01
5889	FMO1	4.648790e-03
5890	FMO2	1.535287e-01
5891	FMO3	9.497068e-02
5892	FMO4	9.386145e-01
5893	FMO5	6.098629e-01
5894	FMOD	4.544012e-01
5895	FMR1	1.456963e-01
5896	FMR1NB	2.588071e-02
5897	FN1	8.380025e-01
5898	FN3K	1
5899	FN3KRP	4.556213e-01
5900	FNBP1	7.708655e-01
5901	FNBP1L	3.863991e-01
5902	FNBP4	1
5903	FNDC1	9.858010e-01
5904	FNDC3A	4.882276e-01
5905	FNDC3B	1
5906	FNDC4	7.487565e-01
5907	FNDC5	3.716845e-01
5908	FNDC7	3.872032e-01
5909	FNDC8	5.337285e-01
5910	FNIP1	9.749366e-01
5911	FNIP2	9.973797e-01
5912	FNTA	1.303630e-01
5913	FNTB	9.239785e-01
5914	FOLH1	1.713739e-01
5915	FOLH1B	7.851484e-01
5916	FOLR1	5.403125e-01
5917	FOLR2	1
5918	FOLR3	2.099523e-02
5919	FOLR4	4.502539e-02
5920	FOS	8.296341e-01
5921	FOSB	3.475205e-01
In gene FOSL1 the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 715     n = 1	mu =   2.01e-07
5922	FOSL1	1.200303e-01
5923	FOSL2	8.055051e-01
5924	FOXA1	6.357772e-01
5925	FOXA2	1
5926	FOXA3	8.469219e-01
5927	FOXB1	3.040708e-01
5928	FOXB2	1
5929	FOXC1	1
5930	FOXC2	1.585175e-01
5931	FOXD2	5.668990e-01
5932	FOXD3	1.322838e-02
5933	FOXD4	1
5934	FOXD4L1	1
5935	FOXD4L3	6.634357e-01
5936	FOXD4L5	5.415421e-01
5937	FOXE1	1
5938	FOXE3	4.398246e-01
5939	FOXF1	1
5940	FOXF2	5.449074e-01
5941	FOXG1	4.026861e-01
5942	FOXH1	1
5943	FOXI1	8.885113e-04
5944	FOXJ1	5.097788e-01
5945	FOXJ2	9.343934e-01
5946	FOXJ3	5.930301e-01
5947	FOXK1	9.109137e-01
5948	FOXK2	8.768025e-01
5949	FOXL1	1.825287e-01
5950	FOXL2	3.193775e-01
5951	FOXM1	7.270551e-01
5952	FOXN1	1
5953	FOXN2	5.322888e-01
5954	FOXN3	3.956408e-01
5955	FOXN4	1
5956	FOXO1	4.747460e-01
5957	FOXO3	5.776728e-01
5958	FOXO4	6.411317e-01
5959	FOXP1	9.689654e-01
5960	FOXP2	9.769540e-01
5961	FOXP3	6.496831e-01
5962	FOXP4	1
5963	FOXQ1	1
5964	FOXR1	1.349228e-01
5965	FOXR2	8.210233e-02
5966	FOXRED1	7.439966e-01
5967	FOXRED2	1
5968	FOXS1	1
5969	FPGS	9.591382e-01
5970	FPGT	1
5971	FPR1	1
Done

Running MutSig 2:
Scatter job 66: processing genes 5882 - 5971
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FMN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
FMN2   10000 perm   2 sec   (4052 perm/sec)   p_kst 1.645000e-01   p_cons 2.085000e-01   p_joint 1.468000e-01

Outputting figure to mutsig2_images.part000000000066/FMN2.33_5241_10000_0.1645_0.2085_0.1468.png
                gene_name: FMN2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
FNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
Cons ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
FNDC1   10000 perm   2 sec   (4377 perm/sec)   p_kst 1.441000e-01   p_cons 5.365000e-01   p_joint 2.484000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC1.14_5777_10000_0.1441_0.5365_0.2484.png
                gene_name: FNDC1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 3 percent done.
FN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
Cons ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
KS ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
FN1   10000 perm   3 sec   (3939 perm/sec)   p_kst 1.812000e-01   p_cons 7.480000e-01   p_joint 3.796000e-01

Outputting figure to mutsig2_images.part000000000066/FN1.13_7651_10000_0.1812_0.748_0.3796.png
                gene_name: FN1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
FOLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
KS ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
FOLH1   10000 perm   2 sec   (5252 perm/sec)   p_kst 9.073000e-01   p_cons 7.208000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOLH1.13_2329_10000_0.9073_0.7208_1.png
                gene_name: FOLH1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
FOLH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
Cons ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
KS ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
FOLH1B   10000 perm   2 sec   (5976 perm/sec)   p_kst 3.360000e-02   p_cons 3.169000e-01   p_joint 7.060000e-02

Joint ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
Cons ci ratio: 4.097013e-02	ci left: 3.075205e-01	ci right 3.204336e-01	k: 6279	n:20000
KS ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
FOLH1B   20000 perm   4 sec   (5381 perm/sec)   p_kst 3.430000e-02   p_cons 3.139500e-01   p_joint 6.030000e-02

Joint ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
Cons ci ratio: 3.386272e-02	ci left: 3.035078e-01	ci right 3.139959e-01	k: 9262	n:30000
KS ci ratio: 1.162231e-01	ci left: 3.440625e-02	ci right 3.868411e-02	k: 1095	n:30000
FOLH1B   30000 perm   6 sec   (5145 perm/sec)   p_kst 3.650000e-02   p_cons 3.087333e-01   p_joint 5.236667e-02

Joint ci ratio: 7.565176e-02	ci left: 6.051551e-02	ci right 6.529819e-02	k: 2515	n:40000
Cons ci ratio: 2.909008e-02	ci left: 3.076601e-01	ci right 3.167672e-01	k: 12488	n:40000
KS ci ratio: 1.008078e-01	ci left: 3.458588e-02	ci right 3.828181e-02	k: 1456	n:40000
FOLH1B   40000 perm   8 sec   (5001 perm/sec)   p_kst 3.640000e-02   p_cons 3.122000e-01   p_joint 6.287500e-02

Joint ci ratio: 6.004685e-02	ci left: 7.617678e-02	ci right 8.091229e-02	k: 3926	n:50000
Cons ci ratio: 2.602290e-02	ci left: 3.080795e-01	ci right 3.162223e-01	k: 15607	n:50000
KS ci ratio: 8.994144e-02	ci left: 3.495147e-02	ci right 3.826261e-02	k: 1829	n:50000
FOLH1B   50000 perm   10 sec   (4883 perm/sec)   p_kst 3.658000e-02   p_cons 3.121400e-01   p_joint 7.852000e-02

Outputting figure to mutsig2_images.part000000000066/FOLH1B.11_1377_50000_0.03658_0.31214_0.07852.png
                gene_name: FOLH1B
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 8 percent done.
FOXG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
Cons ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KS ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
FOXG1   10000 perm   2 sec   (5982 perm/sec)   p_kst 3.800000e-02   p_cons 1.390000e-02   p_joint 2.740000e-02

Joint ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 1.405228e-01	ci left: 3.481282e-02	ci right 4.012274e-02	k: 748	n:20000
FOXG1   20000 perm   4 sec   (5421 perm/sec)   p_kst 3.740000e-02   p_cons 1.220000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
Cons ci ratio: 1.867970e-01	ci left: 1.311422e-02	ci right 1.584766e-02	k: 433	n:30000
KS ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
FOXG1   30000 perm   6 sec   (5186 perm/sec)   p_kst 3.716667e-02   p_cons 1.443333e-02   p_joint 2.220000e-02

Joint ci ratio: 1.567185e-01	ci left: 1.419202e-02	ci right 1.662907e-02	k: 615	n:40000
Cons ci ratio: 1.573685e-01	ci left: 1.407186e-02	ci right 1.649925e-02	k: 610	n:40000
KS ci ratio: 9.981660e-02	ci left: 3.526894e-02	ci right 3.899865e-02	k: 1484	n:40000
FOXG1   40000 perm   8 sec   (5018 perm/sec)   p_kst 3.710000e-02   p_cons 1.525000e-02   p_joint 1.537500e-02

Joint ci ratio: 1.085470e-01	ci left: 2.403851e-02	ci right 2.681696e-02	k: 1270	n:50000
Cons ci ratio: 1.419631e-01	ci left: 1.395279e-02	ci right 1.610405e-02	k: 750	n:50000
KS ci ratio: 8.946049e-02	ci left: 3.532325e-02	ci right 3.865078e-02	k: 1848	n:50000
FOXG1   50000 perm   10 sec   (4890 perm/sec)   p_kst 3.696000e-02   p_cons 1.500000e-02   p_joint 2.540000e-02

Joint ci ratio: 1.066589e-01	ci left: 2.084114e-02	ci right 2.320541e-02	k: 1320	n:60000
Cons ci ratio: 1.308680e-01	ci left: 1.376835e-02	ci right 1.571234e-02	k: 883	n:60000
KS ci ratio: 8.143381e-02	ci left: 3.566711e-02	ci right 3.871120e-02	k: 2230	n:60000
FOXG1   60000 perm   13 sec   (4781 perm/sec)   p_kst 3.716667e-02   p_cons 1.471667e-02   p_joint 2.200000e-02

Joint ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
Cons ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
KS ci ratio: 7.367323e-02	ci left: 3.743752e-02	ci right 4.031515e-02	k: 2720	n:70000
FOXG1   70000 perm   15 sec   (4688 perm/sec)   p_kst 3.885714e-02   p_cons 1.482857e-02   p_joint 2.125714e-02

Joint ci ratio: 8.571916e-02	ci left: 2.438191e-02	ci right 2.657768e-02	k: 2037	n:80000
Cons ci ratio: 1.137111e-01	ci left: 1.380452e-02	ci right 1.548094e-02	k: 1170	n:80000
KS ci ratio: 6.878529e-02	ci left: 3.766897e-02	ci right 4.036459e-02	k: 3120	n:80000
FOXG1   80000 perm   17 sec   (4605 perm/sec)   p_kst 3.900000e-02   p_cons 1.462500e-02   p_joint 2.546250e-02

Joint ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
Cons ci ratio: 1.069354e-01	ci left: 1.392385e-02	ci right 1.550766e-02	k: 1323	n:90000
KS ci ratio: 6.501660e-02	ci left: 3.755858e-02	ci right 4.009347e-02	k: 3493	n:90000
FOXG1   90000 perm   20 sec   (4526 perm/sec)   p_kst 3.881111e-02   p_cons 1.470000e-02   p_joint 1.821111e-02

Joint ci ratio: 9.301727e-02	ci left: 1.663768e-02	ci right 1.827048e-02	k: 1744	n:100000
Cons ci ratio: 1.017329e-01	ci left: 1.388519e-02	ci right 1.538316e-02	k: 1462	n:100000
KS ci ratio: 6.164074e-02	ci left: 3.767057e-02	ci right 4.007627e-02	k: 3886	n:100000
FOXG1   100000 perm   23 sec   (4439 perm/sec)   p_kst 3.886000e-02   p_cons 1.462000e-02   p_joint 1.744000e-02

Joint ci ratio: 9.084375e-02	ci left: 1.588873e-02	ci right 1.740964e-02	k: 1830	n:110000
Cons ci ratio: 9.637148e-02	ci left: 1.410356e-02	ci right 1.554037e-02	k: 1629	n:110000
KS ci ratio: 5.862042e-02	ci left: 3.791735e-02	ci right 4.021613e-02	k: 4296	n:110000
FOXG1   110000 perm   25 sec   (4360 perm/sec)   p_kst 3.905455e-02   p_cons 1.480909e-02   p_joint 1.663636e-02

Outputting figure to mutsig2_images.part000000000066/FOXG1.11_1474_110000_0.039055_0.014809_0.016636.png
                gene_name: FOXG1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 10 percent done.
FMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
Cons ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
KS ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
FMO1   10000 perm   2 sec   (5873 perm/sec)   p_kst 5.160000e-01   p_cons 7.260000e-02   p_joint 1.862000e-01

Joint ci ratio: 5.213864e-02	ci left: 2.145721e-01	ci right 2.261093e-01	k: 4406	n:20000
Cons ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
KS ci ratio: 2.676828e-02	ci left: 5.104476e-01	ci right 5.243474e-01	k: 10348	n:20000
FMO1   20000 perm   4 sec   (5320 perm/sec)   p_kst 5.174000e-01   p_cons 7.330000e-02   p_joint 2.203000e-01

Outputting figure to mutsig2_images.part000000000066/FMO1.9_1631_20000_0.5174_0.0733_0.2203.png
                gene_name: FMO1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
FOXP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
Cons ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
KS ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
FOXP2   10000 perm   2 sec   (5633 perm/sec)   p_kst 7.522000e-01   p_cons 4.820000e-02   p_joint 2.789000e-01

Joint ci ratio: 5.221462e-02	ci left: 2.140769e-01	ci right 2.256047e-01	k: 4396	n:20000
Cons ci ratio: 1.226379e-01	ci left: 4.561215e-02	ci right 5.161995e-02	k: 971	n:20000
KS ci ratio: 1.607787e-02	ci left: 7.421741e-01	ci right 7.542537e-01	k: 14965	n:20000
FOXP2   20000 perm   4 sec   (5132 perm/sec)   p_kst 7.482500e-01   p_cons 4.855000e-02   p_joint 2.198000e-01

Joint ci ratio: 4.152713e-02	ci left: 2.242219e-01	ci right 2.337640e-01	k: 6869	n:30000
Cons ci ratio: 9.755917e-02	ci left: 4.857001e-02	ci right 5.358405e-02	k: 1531	n:30000
KS ci ratio: 1.308866e-02	ci left: 7.444220e-01	ci right 7.542630e-01	k: 22481	n:30000
FOXP2   30000 perm   6 sec   (4913 perm/sec)   p_kst 7.493667e-01   p_cons 5.103333e-02   p_joint 2.289667e-01

Outputting figure to mutsig2_images.part000000000066/FOXP2.9_2379_30000_0.74937_0.051033_0.22897.png
                gene_name: FOXP2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 13 percent done.
FMN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
FMN1   10000 perm   2 sec   (5036 perm/sec)   p_kst 4.042000e-01   p_cons 2.545000e-01   p_joint 3.412000e-01

Outputting figure to mutsig2_images.part000000000066/FMN1.8_3659_10000_0.4042_0.2545_0.3412.png
                gene_name: FMN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 15 percent done.
FOXI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
FOXI1   10000 perm   2 sec   (6385 perm/sec)   p_kst 4.630000e-02   p_cons 8.441000e-01   p_joint 1.160000e-01

Joint ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
Cons ci ratio: 1.210025e-02	ci left: 8.347942e-01	ci right 8.450068e-01	k: 16799	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
FOXI1   20000 perm   3 sec   (5803 perm/sec)   p_kst 4.710000e-02   p_cons 8.399500e-01   p_joint 1.283000e-01

Joint ci ratio: 6.057253e-02	ci left: 1.187771e-01	ci right 1.262295e-01	k: 3674	n:30000
Cons ci ratio: 9.882709e-03	ci left: 8.356673e-01	ci right 8.440001e-01	k: 25196	n:30000
KS ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
FOXI1   30000 perm   5 sec   (5552 perm/sec)   p_kst 4.633333e-02   p_cons 8.398667e-01   p_joint 1.224667e-01

Joint ci ratio: 6.387596e-02	ci left: 8.329474e-02	ci right 8.881553e-02	k: 3441	n:40000
Cons ci ratio: 8.536854e-03	ci left: 8.369251e-01	ci right 8.441254e-01	k: 33622	n:40000
KS ci ratio: 8.693079e-02	ci left: 4.626824e-02	ci right 5.049763e-02	k: 1934	n:40000
FOXI1   40000 perm   7 sec   (5380 perm/sec)   p_kst 4.835000e-02   p_cons 8.405500e-01   p_joint 8.602500e-02

Outputting figure to mutsig2_images.part000000000066/FOXI1.8_1145_40000_0.04835_0.84055_0.086025.png
                gene_name: FOXI1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 17 percent done.
FNDC3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
Cons ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
FNDC3A   10000 perm   2 sec   (4949 perm/sec)   p_kst 4.491000e-01   p_cons 6.759000e-01   p_joint 6.329000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC3A.7_3708_10000_0.4491_0.6759_0.6329.png
                gene_name: FNDC3A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 18 percent done.
FNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
Cons ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
KS ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
FNDC3B   10000 perm   2 sec   (5596 perm/sec)   p_kst 3.063000e-01   p_cons 7.205000e-01   p_joint 6.345000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC3B.7_3715_10000_0.3063_0.7205_0.6345.png
                gene_name: FNDC3B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 20 percent done.
FMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
Cons ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
KS ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
FMR1   10000 perm   2 sec   (5890 perm/sec)   p_kst 8.260000e-01   p_cons 1.903000e-01   p_joint 6.413000e-01

Outputting figure to mutsig2_images.part000000000066/FMR1.6_1967_10000_0.826_0.1903_0.6413.png
                gene_name: FMR1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 22 percent done.
FOXM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
Cons ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
KS ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
FOXM1   10000 perm   2 sec   (6054 perm/sec)   p_kst 9.536000e-01   p_cons 2.136000e-01   p_joint 4.482000e-01

Outputting figure to mutsig2_images.part000000000066/FOXM1.6_2442_10000_0.9536_0.2136_0.4482.png
                gene_name: FOXM1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 23 percent done.
FMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
Cons ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
KS ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
FMO2   10000 perm   1 sec   (6867 perm/sec)   p_kst 4.236000e-01   p_cons 1.895000e-01   p_joint 2.258000e-01

Outputting figure to mutsig2_images.part000000000066/FMO2.5_1448_10000_0.4236_0.1895_0.2258.png
                gene_name: FMO2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 25 percent done.
FMO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
Cons ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
KS ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
FMO3   10000 perm   2 sec   (6341 perm/sec)   p_kst 4.403000e-01   p_cons 4.900000e-03   p_joint 7.500000e-03

Joint ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
Cons ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
KS ci ratio: 3.140802e-02	ci left: 4.309088e-01	ci right 4.447093e-01	k: 8756	n:20000
FMO3   20000 perm   4 sec   (5677 perm/sec)   p_kst 4.378000e-01   p_cons 4.550000e-03   p_joint 2.845000e-02

Joint ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
Cons ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
KS ci ratio: 2.581967e-02	ci left: 4.288475e-01	ci right 4.400986e-01	k: 13034	n:30000
FMO3   30000 perm   6 sec   (5427 perm/sec)   p_kst 4.344667e-01   p_cons 4.333333e-03   p_joint 1.406667e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 3.283706e-01	ci left: 2.967987e-03	ci right 4.155883e-03	k: 141	n:40000
KS ci ratio: 2.235362e-02	ci left: 4.297595e-01	ci right 4.394999e-01	k: 17385	n:40000
FMO3   40000 perm   8 sec   (5270 perm/sec)   p_kst 4.346250e-01   p_cons 3.525000e-03   p_joint 2.172500e-02

Joint ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
Cons ci ratio: 2.992539e-01	ci left: 2.908789e-03	ci right 3.950180e-03	k: 170	n:50000
KS ci ratio: 2.004296e-02	ci left: 4.290704e-01	ci right 4.377773e-01	k: 21671	n:50000
FMO3   50000 perm   10 sec   (5149 perm/sec)   p_kst 4.334200e-01   p_cons 3.400000e-03   p_joint 1.786000e-02

Joint ci ratio: 1.160331e-01	ci left: 1.758251e-02	ci right 1.976440e-02	k: 1119	n:60000
Cons ci ratio: 2.674852e-01	ci left: 3.089918e-03	ci right 4.059079e-03	k: 213	n:60000
KS ci ratio: 1.825099e-02	ci left: 4.306785e-01	ci right 4.386279e-01	k: 26079	n:60000
FMO3   60000 perm   12 sec   (5040 perm/sec)   p_kst 4.346500e-01   p_cons 3.550000e-03   p_joint 1.865000e-02

Joint ci ratio: 9.659520e-02	ci left: 2.187429e-02	ci right 2.410835e-02	k: 1608	n:70000
Cons ci ratio: 2.515494e-01	ci left: 3.022488e-03	ci right 3.905176e-03	k: 241	n:70000
KS ci ratio: 1.693976e-02	ci left: 4.297390e-01	ci right 4.370951e-01	k: 30339	n:70000
FMO3   70000 perm   14 sec   (4942 perm/sec)   p_kst 4.334143e-01   p_cons 3.442857e-03   p_joint 2.297143e-02

Joint ci ratio: 9.142735e-02	ci left: 2.143454e-02	ci right 2.350029e-02	k: 1796	n:80000
Cons ci ratio: 2.232951e-01	ci left: 3.409082e-03	ci right 4.277510e-03	k: 306	n:80000
KS ci ratio: 1.581519e-02	ci left: 4.309239e-01	ci right 4.378059e-01	k: 34749	n:80000
FMO3   80000 perm   17 sec   (4848 perm/sec)   p_kst 4.343625e-01   p_cons 3.825000e-03   p_joint 2.245000e-02

Joint ci ratio: 9.244038e-02	ci left: 1.868259e-02	ci right 2.050411e-02	k: 1762	n:90000
Cons ci ratio: 2.109468e-01	ci left: 3.419066e-03	ci right 4.235649e-03	k: 343	n:90000
KS ci ratio: 1.493897e-02	ci left: 4.301924e-01	ci right 4.366785e-01	k: 39009	n:90000
FMO3   90000 perm   19 sec   (4750 perm/sec)   p_kst 4.334333e-01   p_cons 3.811111e-03   p_joint 1.957778e-02

Joint ci ratio: 9.552735e-02	ci left: 1.576832e-02	ci right 1.735989e-02	k: 1655	n:100000
Cons ci ratio: 1.991363e-01	ci left: 3.475620e-03	ci right 4.253593e-03	k: 385	n:100000
KS ci ratio: 1.414884e-02	ci left: 4.311749e-01	ci right 4.373289e-01	k: 43425	n:100000
FMO3   100000 perm   21 sec   (4660 perm/sec)   p_kst 4.342500e-01   p_cons 3.850000e-03   p_joint 1.655000e-02

Joint ci ratio: 8.235319e-02	ci left: 1.935003e-02	ci right 2.102086e-02	k: 2219	n:110000
Cons ci ratio: 1.895556e-01	ci left: 3.505610e-03	ci right 4.248198e-03	k: 425	n:110000
KS ci ratio: 1.351102e-02	ci left: 4.305687e-01	ci right 4.364348e-01	k: 47685	n:110000
FMO3   110000 perm   24 sec   (4570 perm/sec)   p_kst 4.335000e-01   p_cons 3.863636e-03   p_joint 2.017273e-02

Joint ci ratio: 8.448270e-02	ci left: 1.687985e-02	ci right 1.837692e-02	k: 2114	n:120000
Cons ci ratio: 1.814323e-01	ci left: 3.523392e-03	ci right 4.234248e-03	k: 464	n:120000
KS ci ratio: 1.292837e-02	ci left: 4.309767e-01	ci right 4.365931e-01	k: 52054	n:120000
FMO3   120000 perm   27 sec   (4494 perm/sec)   p_kst 4.337833e-01   p_cons 3.866667e-03   p_joint 1.761667e-02

Joint ci ratio: 7.971536e-02	ci left: 1.753306e-02	ci right 1.899623e-02	k: 2373	n:130000
Cons ci ratio: 1.725610e-01	ci left: 3.612609e-03	ci right 4.302116e-03	k: 513	n:130000
KS ci ratio: 1.240678e-02	ci left: 4.316570e-01	ci right 4.370536e-01	k: 56466	n:130000
FMO3   130000 perm   29 sec   (4408 perm/sec)   p_kst 4.343538e-01   p_cons 3.946154e-03   p_joint 1.825385e-02

Joint ci ratio: 7.914324e-02	ci left: 1.653940e-02	ci right 1.790928e-02	k: 2410	n:140000
Cons ci ratio: 1.659140e-01	ci left: 3.641866e-03	ci right 4.307508e-03	k: 555	n:140000
KS ci ratio: 1.196201e-02	ci left: 4.314873e-01	ci right 4.366869e-01	k: 60772	n:140000
FMO3   140000 perm   32 sec   (4335 perm/sec)   p_kst 4.340857e-01   p_cons 3.964286e-03   p_joint 1.721429e-02

Joint ci ratio: 7.383071e-02	ci left: 1.776515e-02	ci right 1.913355e-02	k: 2766	n:150000
Cons ci ratio: 1.602496e-01	ci left: 3.654862e-03	ci right 4.297878e-03	k: 595	n:150000
KS ci ratio: 1.154354e-02	ci left: 4.321227e-01	ci right 4.371465e-01	k: 65195	n:150000
FMO3   150000 perm   35 sec   (4266 perm/sec)   p_kst 4.346333e-01   p_cons 3.966667e-03   p_joint 1.844000e-02

Joint ci ratio: 7.119765e-02	ci left: 1.793131e-02	ci right 1.926121e-02	k: 2974	n:160000
Cons ci ratio: 1.546409e-01	ci left: 3.690606e-03	ci right 4.315079e-03	k: 639	n:160000
KS ci ratio: 1.117277e-02	ci left: 4.323878e-01	ci right 4.372521e-01	k: 69571	n:160000
FMO3   160000 perm   38 sec   (4205 perm/sec)   p_kst 4.348187e-01   p_cons 3.993750e-03   p_joint 1.858750e-02

Joint ci ratio: 6.491455e-02	ci left: 2.031786e-02	ci right 2.168678e-02	k: 3569	n:170000
Cons ci ratio: 1.500237e-01	ci left: 3.699839e-03	ci right 4.305504e-03	k: 679	n:170000
KS ci ratio: 1.082910e-02	ci left: 4.329178e-01	ci right 4.376373e-01	k: 73997	n:170000
FMO3   170000 perm   41 sec   (4144 perm/sec)   p_kst 4.352765e-01   p_cons 3.994118e-03   p_joint 2.099412e-02

Joint ci ratio: 6.411541e-02	ci left: 1.969175e-02	ci right 2.100154e-02	k: 3661	n:180000
Cons ci ratio: 1.465137e-01	ci left: 3.670820e-03	ci right 4.256445e-03	k: 712	n:180000
KS ci ratio: 1.052647e-02	ci left: 4.328691e-01	ci right 4.374553e-01	k: 78329	n:180000
FMO3   180000 perm   44 sec   (4086 perm/sec)   p_kst 4.351611e-01   p_cons 3.955556e-03   p_joint 2.033889e-02

Joint ci ratio: 6.397255e-02	ci left: 1.875863e-02	ci right 2.000347e-02	k: 3681	n:190000
Cons ci ratio: 1.435290e-01	ci left: 3.629779e-03	ci right 4.196049e-03	k: 742	n:190000
KS ci ratio: 1.024699e-02	ci left: 4.328692e-01	ci right 4.373328e-01	k: 82669	n:190000
FMO3   190000 perm   47 sec   (4030 perm/sec)   p_kst 4.351000e-01   p_cons 3.905263e-03   p_joint 1.937368e-02

Joint ci ratio: 9.757624e-02	ci left: 7.614222e-03	ci right 8.400138e-03	k: 1600	n:200000
Cons ci ratio: 1.622522e-01	ci left: 2.673860e-03	ci right 3.150729e-03	k: 581	n:200000
KS ci ratio: 9.985609e-03	ci left: 4.330206e-01	ci right 4.373712e-01	k: 87039	n:200000
FMO3   200000 perm   50 sec   (3975 perm/sec)   p_kst 4.351950e-01   p_cons 2.905000e-03   p_joint 8.000000e-03

Joint ci ratio: 9.624128e-02	ci left: 7.460704e-03	ci right 8.219643e-03	k: 1645	n:210000
Cons ci ratio: 1.573253e-01	ci left: 2.715684e-03	ci right 3.183918e-03	k: 618	n:210000
KS ci ratio: 9.746183e-03	ci left: 4.330114e-01	ci right 4.372570e-01	k: 91378	n:210000
FMO3   210000 perm   54 sec   (3922 perm/sec)   p_kst 4.351333e-01   p_cons 2.942857e-03   p_joint 7.833333e-03

Joint ci ratio: 6.614487e-02	ci left: 1.519360e-02	ci right 1.623740e-02	k: 3456	n:220000
Cons ci ratio: 1.466700e-01	ci left: 2.998943e-03	ci right 3.477930e-03	k: 711	n:220000
KS ci ratio: 9.520815e-03	ci left: 4.331269e-01	ci right 4.372748e-01	k: 95744	n:220000
FMO3   220000 perm   57 sec   (3868 perm/sec)   p_kst 4.352000e-01   p_cons 3.231818e-03   p_joint 1.570909e-02

Joint ci ratio: 6.525397e-02	ci left: 1.494348e-02	ci right 1.595574e-02	k: 3552	n:230000
Cons ci ratio: 1.443598e-01	ci left: 2.964909e-03	ci right 3.430359e-03	k: 734	n:230000
KS ci ratio: 9.309074e-03	ci left: 4.333028e-01	ci right 4.373597e-01	k: 100126	n:230000
FMO3   230000 perm   60 sec   (3817 perm/sec)   p_kst 4.353304e-01   p_cons 3.191304e-03   p_joint 1.544348e-02

Joint ci ratio: 6.567989e-02	ci left: 1.414441e-02	ci right 1.510903e-02	k: 3509	n:240000
Cons ci ratio: 1.414089e-01	ci left: 2.965920e-03	ci right 3.421208e-03	k: 765	n:240000
KS ci ratio: 9.109546e-03	ci left: 4.335359e-01	ci right 4.375074e-01	k: 104525	n:240000
FMO3   240000 perm   64 sec   (3765 perm/sec)   p_kst 4.355208e-01   p_cons 3.187500e-03   p_joint 1.462083e-02

Joint ci ratio: 6.465188e-02	ci left: 1.402324e-02	ci right 1.496407e-02	k: 3622	n:250000
Cons ci ratio: 1.386317e-01	ci left: 2.966940e-03	ci right 3.412701e-03	k: 796	n:250000
KS ci ratio: 8.921521e-03	ci left: 4.337950e-01	ci right 4.376864e-01	k: 108935	n:250000
FMO3   250000 perm   67 sec   (3718 perm/sec)   p_kst 4.357400e-01   p_cons 3.184000e-03   p_joint 1.448800e-02

Joint ci ratio: 6.096239e-02	ci left: 1.517640e-02	ci right 1.613444e-02	k: 4069	n:260000
Cons ci ratio: 1.363428e-01	ci left: 2.953099e-03	ci right 3.388861e-03	k: 823	n:260000
KS ci ratio: 8.745360e-03	ci left: 4.339966e-01	ci right 4.378125e-01	k: 113335	n:260000
FMO3   260000 perm   71 sec   (3667 perm/sec)   p_kst 4.359038e-01   p_cons 3.165385e-03   p_joint 1.565000e-02

Joint ci ratio: 6.186599e-02	ci left: 1.419835e-02	ci right 1.510841e-02	k: 3955	n:270000
Cons ci ratio: 1.337700e-01	ci left: 2.958240e-03	ci right 3.385868e-03	k: 855	n:270000
KS ci ratio: 8.585053e-03	ci left: 4.338507e-01	ci right 4.375951e-01	k: 117645	n:270000
FMO3   270000 perm   75 sec   (3621 perm/sec)   p_kst 4.357222e-01   p_cons 3.166667e-03   p_joint 1.464815e-02

Joint ci ratio: 6.021364e-02	ci left: 1.446153e-02	ci right 1.536284e-02	k: 4174	n:280000
Cons ci ratio: 1.308947e-01	ci left: 2.983813e-03	ci right 3.405146e-03	k: 893	n:280000
KS ci ratio: 8.425963e-03	ci left: 4.341407e-01	ci right 4.378178e-01	k: 122074	n:280000
FMO3   280000 perm   78 sec   (3575 perm/sec)   p_kst 4.359786e-01   p_cons 3.189286e-03   p_joint 1.490714e-02

Joint ci ratio: 5.924366e-02	ci left: 1.443160e-02	ci right 1.531606e-02	k: 4312	n:290000
Cons ci ratio: 1.284046e-01	ci left: 2.997699e-03	ci right 3.412327e-03	k: 928	n:290000
KS ci ratio: 8.275282e-03	ci left: 4.344181e-01	ci right 4.380314e-01	k: 126505	n:290000
FMO3   290000 perm   82 sec   (3530 perm/sec)   p_kst 4.362241e-01   p_cons 3.200000e-03   p_joint 1.486897e-02

Joint ci ratio: 5.849274e-02	ci left: 1.431836e-02	ci right 1.518438e-02	k: 4424	n:300000
Cons ci ratio: 1.263807e-01	ci left: 2.994589e-03	ci right 3.401768e-03	k: 958	n:300000
KS ci ratio: 8.137475e-03	ci left: 4.343711e-01	ci right 4.379235e-01	k: 130844	n:300000
FMO3   300000 perm   86 sec   (3487 perm/sec)   p_kst 4.361467e-01   p_cons 3.193333e-03   p_joint 1.474667e-02

Joint ci ratio: 5.750011e-02	ci left: 1.434606e-02	ci right 1.519853e-02	k: 4578	n:310000
Cons ci ratio: 1.240101e-01	ci left: 3.013608e-03	ci right 3.415123e-03	k: 995	n:310000
KS ci ratio: 8.008957e-03	ci left: 4.341663e-01	ci right 4.376607e-01	k: 135133	n:310000
FMO3   310000 perm   90 sec   (3444 perm/sec)   p_kst 4.359129e-01   p_cons 3.209677e-03   p_joint 1.476774e-02

Joint ci ratio: 5.701664e-02	ci left: 1.414104e-02	ci right 1.497404e-02	k: 4657	n:320000
Cons ci ratio: 1.223636e-01	ci left: 3.001206e-03	ci right 3.395375e-03	k: 1022	n:320000
KS ci ratio: 7.883333e-03	ci left: 4.341622e-01	ci right 4.376015e-01	k: 139482	n:320000
FMO3   320000 perm   94 sec   (3402 perm/sec)   p_kst 4.358812e-01   p_cons 3.193750e-03   p_joint 1.455313e-02

Joint ci ratio: 5.609613e-02	ci left: 1.417260e-02	ci right 1.499354e-02	k: 4811	n:330000
Cons ci ratio: 1.204936e-01	ci left: 3.004285e-03	ci right 3.392399e-03	k: 1054	n:330000
KS ci ratio: 7.761384e-03	ci left: 4.342890e-01	ci right 4.376758e-01	k: 143874	n:330000
FMO3   330000 perm   98 sec   (3361 perm/sec)   p_kst 4.359818e-01   p_cons 3.193939e-03   p_joint 1.457879e-02

Joint ci ratio: 5.398543e-02	ci left: 1.485816e-02	ci right 1.568542e-02	k: 5191	n:340000
Cons ci ratio: 1.192583e-01	ci left: 2.978687e-03	ci right 3.359270e-03	k: 1076	n:340000
KS ci ratio: 7.645609e-03	ci left: 4.343646e-01	ci right 4.377012e-01	k: 148251	n:340000
FMO3   340000 perm   102 sec   (3323 perm/sec)   p_kst 4.360324e-01   p_cons 3.164706e-03   p_joint 1.526765e-02

Joint ci ratio: 5.330851e-02	ci left: 1.480854e-02	ci right 1.562238e-02	k: 5324	n:350000
Cons ci ratio: 1.174189e-01	ci left: 2.987850e-03	ci right 3.363307e-03	k: 1110	n:350000
KS ci ratio: 7.534297e-03	ci left: 4.344734e-01	ci right 4.377620e-01	k: 152641	n:350000
FMO3   350000 perm   107 sec   (3284 perm/sec)   p_kst 4.361171e-01   p_cons 3.171429e-03   p_joint 1.521143e-02

Joint ci ratio: 5.397705e-02	ci left: 1.404899e-02	ci right 1.483107e-02	k: 5197	n:360000
Cons ci ratio: 1.156114e-01	ci left: 2.999244e-03	ci right 3.369935e-03	k: 1145	n:360000
KS ci ratio: 7.429261e-03	ci left: 4.344737e-01	ci right 4.377163e-01	k: 156994	n:360000
FMO3   360000 perm   111 sec   (3247 perm/sec)   p_kst 4.360944e-01   p_cons 3.180556e-03   p_joint 1.443611e-02

Joint ci ratio: 5.342245e-02	ci left: 1.395991e-02	ci right 1.472880e-02	k: 5306	n:370000
Cons ci ratio: 1.138366e-01	ci left: 3.012690e-03	ci right 3.378943e-03	k: 1181	n:370000
KS ci ratio: 7.332447e-03	ci left: 4.342095e-01	ci right 4.374077e-01	k: 161249	n:370000
FMO3   370000 perm   115 sec   (3210 perm/sec)   p_kst 4.358081e-01   p_cons 3.191892e-03   p_joint 1.434054e-02

Joint ci ratio: 5.277594e-02	ci left: 1.393270e-02	ci right 1.469052e-02	k: 5437	n:380000
Cons ci ratio: 1.124192e-01	ci left: 3.010122e-03	ci right 3.371204e-03	k: 1211	n:380000
KS ci ratio: 7.234128e-03	ci left: 4.343120e-01	ci right 4.374679e-01	k: 165638	n:380000
FMO3   380000 perm   120 sec   (3176 perm/sec)   p_kst 4.358895e-01   p_cons 3.186842e-03   p_joint 1.430789e-02

Joint ci ratio: 5.107001e-02	ci left: 1.450184e-02	ci right 1.526437e-02	k: 5803	n:390000
Cons ci ratio: 1.110086e-01	ci left: 3.010205e-03	ci right 3.366470e-03	k: 1242	n:390000
KS ci ratio: 7.141373e-03	ci left: 4.342917e-01	ci right 4.374067e-01	k: 169981	n:390000
FMO3   390000 perm   124 sec   (3140 perm/sec)   p_kst 4.358487e-01   p_cons 3.184615e-03   p_joint 1.487949e-02

Joint ci ratio: 5.200104e-02	ci left: 1.364311e-02	ci right 1.437396e-02	k: 5602	n:400000
Cons ci ratio: 1.000576e-01	ci left: 3.631182e-03	ci right 4.016060e-03	k: 1528	n:400000
KS ci ratio: 7.049122e-03	ci left: 4.344800e-01	ci right 4.375560e-01	k: 174407	n:400000
FMO3   400000 perm   129 sec   (3106 perm/sec)   p_kst 4.360175e-01   p_cons 3.820000e-03   p_joint 1.400500e-02

Joint ci ratio: 5.146793e-02	ci left: 1.359202e-02	ci right 1.431244e-02	k: 5719	n:410000
Cons ci ratio: 9.855329e-02	ci left: 3.654406e-03	ci right 4.035585e-03	k: 1575	n:410000
KS ci ratio: 6.964982e-03	ci left: 4.343326e-01	ci right 4.373707e-01	k: 178699	n:410000
FMO3   410000 perm   133 sec   (3073 perm/sec)   p_kst 4.358512e-01   p_cons 3.841463e-03   p_joint 1.394878e-02

Outputting figure to mutsig2_images.part000000000066/FMO3.5_1631_410000_0.43585_0.0038415_0.013949.png
                gene_name: FMO3
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0037 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.014 

Current progress: 27 percent done.
FMR1NB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
FMR1NB   10000 perm   1 sec   (7134 perm/sec)   p_kst 8.981000e-01   p_cons 8.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FMR1NB.5_788_10000_0.8981_0.8952_1.png
                gene_name: FMR1NB
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
FOLR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
Cons ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
KS ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
FOLR3   10000 perm   1 sec   (7095 perm/sec)   p_kst 6.010000e-01   p_cons 1.753000e-01   p_joint 5.462000e-01

Outputting figure to mutsig2_images.part000000000066/FOLR3.5_752_10000_0.601_0.1753_0.5462.png
                gene_name: FOLR3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 30 percent done.
FOLR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
FOLR4   10000 perm   2 sec   (6648 perm/sec)   p_kst 3.230000e-02   p_cons 5.719000e-01   p_joint 8.830000e-02

Joint ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
Cons ci ratio: 2.443652e-02	ci left: 5.557414e-01	ci right 5.695404e-01	k: 11253	n:20000
KS ci ratio: 1.503973e-01	ci left: 3.037464e-02	ci right 3.536238e-02	k: 656	n:20000
FOLR4   20000 perm   3 sec   (6050 perm/sec)   p_kst 3.280000e-02   p_cons 5.626500e-01   p_joint 7.315000e-02

Joint ci ratio: 7.955680e-02	ci left: 7.188049e-02	ci right 7.786882e-02	k: 2245	n:30000
Cons ci ratio: 1.993317e-02	ci left: 5.574981e-01	ci right 5.687563e-01	k: 16894	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
FOLR4   30000 perm   5 sec   (5773 perm/sec)   p_kst 3.243333e-02   p_cons 5.631333e-01   p_joint 7.483333e-02

Joint ci ratio: 7.217765e-02	ci left: 6.619091e-02	ci right 7.117192e-02	k: 2746	n:40000
Cons ci ratio: 1.723330e-02	ci left: 5.590984e-01	ci right 5.688423e-01	k: 22559	n:40000
KS ci ratio: 1.076685e-01	ci left: 3.034547e-02	ci right 3.382290e-02	k: 1282	n:40000
FOLR4   40000 perm   7 sec   (5607 perm/sec)   p_kst 3.205000e-02   p_cons 5.639750e-01   p_joint 6.865000e-02

Joint ci ratio: 6.160106e-02	ci left: 7.260746e-02	ci right 7.724204e-02	k: 3745	n:50000
Cons ci ratio: 1.510279e-02	ci left: 5.696314e-01	ci right 5.783200e-01	k: 28699	n:50000
KS ci ratio: 9.673107e-02	ci left: 3.025969e-02	ci right 3.335498e-02	k: 1589	n:50000
FOLR4   50000 perm   9 sec   (5467 perm/sec)   p_kst 3.178000e-02   p_cons 5.739800e-01   p_joint 7.490000e-02

Outputting figure to mutsig2_images.part000000000066/FOLR4.5_747_50000_0.03178_0.57398_0.0749.png
                gene_name: FOLR4
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.077 

Current progress: 32 percent done.
FMNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
Cons ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
KS ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
FMNL3   10000 perm   2 sec   (5824 perm/sec)   p_kst 7.481000e-01   p_cons 3.235000e-01   p_joint 6.867000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL3.4_3188_10000_0.7481_0.3235_0.6867.png
                gene_name: FMNL3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 33 percent done.
FMO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
KS ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
FMO4   10000 perm   2 sec   (6057 perm/sec)   p_kst 8.115000e-01   p_cons 7.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FMO4.4_1709_10000_0.8115_0.782_1.png
                gene_name: FMO4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
FMO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
FMO5   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.297000e-01   p_cons 5.500000e-02   p_joint 2.182000e-01

Joint ci ratio: 6.427714e-02	ci left: 1.517365e-01	ci right 1.618635e-01	k: 3135	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 4.073830e-02	ci left: 3.099566e-01	ci right 3.228968e-01	k: 6328	n:20000
FMO5   20000 perm   4 sec   (5684 perm/sec)   p_kst 3.164000e-01   p_cons 5.405000e-02   p_joint 1.567500e-01

Joint ci ratio: 5.487546e-02	ci left: 1.413630e-01	ci right 1.493725e-01	k: 4360	n:30000
Cons ci ratio: 9.572925e-02	ci left: 5.039385e-02	ci right 5.549316e-02	k: 1587	n:30000
KS ci ratio: 3.323069e-02	ci left: 3.115700e-01	ci right 3.221322e-01	k: 9505	n:30000
FMO5   30000 perm   6 sec   (5440 perm/sec)   p_kst 3.168333e-01   p_cons 5.290000e-02   p_joint 1.453333e-01

Outputting figure to mutsig2_images.part000000000066/FMO5.4_1777_30000_0.31683_0.0529_0.14533.png
                gene_name: FMO5
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 37 percent done.
FNDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
Cons ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
FNDC7   10000 perm   2 sec   (6503 perm/sec)   p_kst 1.670000e-02   p_cons 9.048000e-01   p_joint 4.600000e-02

Joint ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
Cons ci ratio: 8.935041e-03	ci left: 9.017694e-01	ci right 9.099122e-01	k: 18118	n:20000
KS ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
FNDC7   20000 perm   3 sec   (5856 perm/sec)   p_kst 1.735000e-02   p_cons 9.059000e-01   p_joint 4.540000e-02

Joint ci ratio: 8.691329e-02	ci left: 6.073356e-02	ci right 6.628467e-02	k: 1904	n:30000
Cons ci ratio: 7.456476e-03	ci left: 8.986815e-01	ci right 9.054405e-01	k: 27063	n:30000
KS ci ratio: 1.715833e-01	ci left: 1.563128e-02	ci right 1.859663e-02	k: 512	n:30000
FNDC7   30000 perm   5 sec   (5595 perm/sec)   p_kst 1.706667e-02   p_cons 9.021000e-01   p_joint 6.346667e-02

Joint ci ratio: 8.786528e-02	ci left: 4.531355e-02	ci right 4.950247e-02	k: 1895	n:40000
Cons ci ratio: 6.420720e-03	ci left: 9.001592e-01	ci right 9.059822e-01	k: 36124	n:40000
KS ci ratio: 1.475029e-01	ci left: 1.606896e-02	ci right 1.865179e-02	k: 693	n:40000
FNDC7   40000 perm   7 sec   (5389 perm/sec)   p_kst 1.732500e-02   p_cons 9.031000e-01   p_joint 4.737500e-02

Joint ci ratio: 7.555906e-02	ci left: 4.914671e-02	ci right 5.302562e-02	k: 2553	n:50000
Cons ci ratio: 5.721101e-03	ci left: 9.011415e-01	ci right 9.063315e-01	k: 45188	n:50000
KS ci ratio: 1.305967e-01	ci left: 1.654294e-02	ci right 1.887354e-02	k: 884	n:50000
FNDC7   50000 perm   10 sec   (5240 perm/sec)   p_kst 1.768000e-02   p_cons 9.037600e-01   p_joint 5.106000e-02

Joint ci ratio: 7.276853e-02	ci left: 4.445210e-02	ci right 4.782531e-02	k: 2767	n:60000
Cons ci ratio: 5.248348e-03	ci left: 9.005029e-01	ci right 9.052580e-01	k: 54174	n:60000
KS ci ratio: 1.207315e-01	ci left: 1.622326e-02	ci right 1.832381e-02	k: 1035	n:60000
FNDC7   60000 perm   12 sec   (5122 perm/sec)   p_kst 1.725000e-02   p_cons 9.029000e-01   p_joint 4.611667e-02

Joint ci ratio: 6.835656e-02	ci left: 4.333552e-02	ci right 4.641664e-02	k: 3140	n:70000
Cons ci ratio: 4.879547e-03	ci left: 8.999324e-01	ci right 9.043485e-01	k: 63151	n:70000
KS ci ratio: 1.114323e-01	ci left: 1.640258e-02	ci right 1.835201e-02	k: 1215	n:70000
FNDC7   70000 perm   14 sec   (5008 perm/sec)   p_kst 1.735714e-02   p_cons 9.021571e-01   p_joint 4.485714e-02

Joint ci ratio: 6.207037e-02	ci left: 4.601160e-02	ci right 4.897133e-02	k: 3798	n:80000
Cons ci ratio: 4.553239e-03	ci left: 9.005119e-01	ci right 9.046339e-01	k: 72207	n:80000
KS ci ratio: 1.044926e-01	ci left: 1.638341e-02	ci right 1.820184e-02	k: 1382	n:80000
FNDC7   80000 perm   16 sec   (4913 perm/sec)   p_kst 1.727500e-02   p_cons 9.025875e-01   p_joint 4.747500e-02

Joint ci ratio: 6.039796e-02	ci left: 4.335909e-02	ci right 4.607036e-02	k: 4023	n:90000
Cons ci ratio: 4.287085e-03	ci left: 9.008685e-01	ci right 9.047499e-01	k: 81254	n:90000
KS ci ratio: 9.916312e-02	ci left: 1.621968e-02	ci right 1.792276e-02	k: 1535	n:90000
FNDC7   90000 perm   19 sec   (4824 perm/sec)   p_kst 1.705556e-02   p_cons 9.028222e-01   p_joint 4.470000e-02

Outputting figure to mutsig2_images.part000000000066/FNDC7.4_2250_90000_0.017056_0.90282_0.0447.png
                gene_name: FNDC7
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 38 percent done.
FNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
Cons ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
KS ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
FNIP1   10000 perm   2 sec   (5899 perm/sec)   p_kst 4.389000e-01   p_cons 9.530000e-02   p_joint 1.872000e-01

Joint ci ratio: 5.846893e-02	ci left: 1.781074e-01	ci right 1.888848e-01	k: 3669	n:20000
Cons ci ratio: 8.500824e-02	ci left: 9.200023e-02	ci right 1.002176e-01	k: 1921	n:20000
KS ci ratio: 3.153914e-02	ci left: 4.288627e-01	ci right 4.426560e-01	k: 8715	n:20000
FNIP1   20000 perm   4 sec   (5305 perm/sec)   p_kst 4.357500e-01   p_cons 9.605000e-02   p_joint 1.834500e-01

Outputting figure to mutsig2_images.part000000000066/FNIP1.4_3573_20000_0.43575_0.09605_0.18345.png
                gene_name: FNIP1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 40 percent done.
FNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
FNIP2   10000 perm   2 sec   (6038 perm/sec)   p_kst 1.926000e-01   p_cons 2.046000e-01   p_joint 2.843000e-01

Outputting figure to mutsig2_images.part000000000066/FNIP2.4_3413_10000_0.1926_0.2046_0.2843.png
                gene_name: FNIP2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 42 percent done.
FOXC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
FOXC2   10000 perm   2 sec   (6233 perm/sec)   p_kst 9.820000e-01   p_cons 6.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXC2.4_1510_10000_0.982_0.6906_1.png
                gene_name: FOXC2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
FOXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
Cons ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
FOXD3   10000 perm   1 sec   (6711 perm/sec)   p_kst 3.260000e-02   p_cons 7.570000e-02   p_joint 3.270000e-02

Joint ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
Cons ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
KS ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
FOXD3   20000 perm   3 sec   (6070 perm/sec)   p_kst 3.380000e-02   p_cons 7.535000e-02   p_joint 3.455000e-02

Joint ci ratio: 1.498542e-01	ci left: 2.062674e-02	ci right 2.399999e-02	k: 668	n:30000
Cons ci ratio: 7.874493e-02	ci left: 7.328763e-02	ci right 7.932806e-02	k: 2288	n:30000
KS ci ratio: 1.203893e-01	ci left: 3.207488e-02	ci right 3.621597e-02	k: 1023	n:30000
FOXD3   30000 perm   5 sec   (5787 perm/sec)   p_kst 3.410000e-02   p_cons 7.626667e-02   p_joint 2.226667e-02

Joint ci ratio: 1.122715e-01	ci left: 2.791220e-02	ci right 3.125656e-02	k: 1182	n:40000
Cons ci ratio: 6.865918e-02	ci left: 7.275707e-02	ci right 7.795477e-02	k: 3013	n:40000
KS ci ratio: 1.081484e-01	ci left: 3.007766e-02	ci right 3.354074e-02	k: 1271	n:40000
FOXD3   40000 perm   7 sec   (5615 perm/sec)   p_kst 3.177500e-02   p_cons 7.532500e-02   p_joint 2.955000e-02

Joint ci ratio: 1.199879e-01	ci left: 1.964460e-02	ci right 2.217145e-02	k: 1044	n:50000
Cons ci ratio: 5.820095e-02	ci left: 8.075396e-02	ci right 8.561456e-02	k: 4158	n:50000
KS ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
FOXD3   50000 perm   9 sec   (5464 perm/sec)   p_kst 3.208000e-02   p_cons 8.316000e-02   p_joint 2.088000e-02

Joint ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
Cons ci ratio: 5.297850e-02	ci left: 8.139713e-02	ci right 8.584325e-02	k: 5016	n:60000
KS ci ratio: 8.717688e-02	ci left: 3.117703e-02	ci right 3.403508e-02	k: 1955	n:60000
FOXD3   60000 perm   11 sec   (5338 perm/sec)   p_kst 3.258333e-02   p_cons 8.360000e-02   p_joint 1.985000e-02

Joint ci ratio: 8.173393e-02	ci left: 3.051244e-02	ci right 3.312656e-02	k: 2226	n:70000
Cons ci ratio: 4.934900e-02	ci left: 8.064157e-02	ci right 8.473596e-02	k: 5787	n:70000
KS ci ratio: 7.997055e-02	ci left: 3.185702e-02	ci right 3.452472e-02	k: 2322	n:70000
FOXD3   70000 perm   13 sec   (5221 perm/sec)   p_kst 3.317143e-02   p_cons 8.267143e-02   p_joint 3.180000e-02

Outputting figure to mutsig2_images.part000000000066/FOXD3.4_1441_70000_0.033171_0.082671_0.0318.png
                gene_name: FOXD3
               theta_stop: 0.082 
                    nperm: 70000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 45 percent done.
FOXK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 3.678368e-02	ci left: 5.218619e-01	ci right 5.415197e-01	k: 5317	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
FOXK1   10000 perm   2 sec   (5977 perm/sec)   p_kst 3.000000e-04   p_cons 5.317000e-01   p_joint 1.050000e-02

Joint ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
Cons ci ratio: 2.544268e-02	ci left: 5.357650e-01	ci right 5.496226e-01	k: 10854	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
FOXK1   20000 perm   4 sec   (5426 perm/sec)   p_kst 2.000000e-04   p_cons 5.427000e-01   p_joint 5.900000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 2.166640e-02	ci left: 5.160956e-01	ci right 5.274336e-01	k: 15653	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
FOXK1   30000 perm   6 sec   (5212 perm/sec)   p_kst 2.000000e-04   p_cons 5.217667e-01   p_joint 2.966667e-03

Joint ci ratio: 3.934821e-01	ci left: 1.989462e-03	ci right 2.984965e-03	k: 98	n:40000
Cons ci ratio: 1.880684e-02	ci left: 5.157154e-01	ci right 5.255316e-01	k: 20825	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
FOXK1   40000 perm   8 sec   (5059 perm/sec)   p_kst 2.750000e-04   p_cons 5.206250e-01   p_joint 2.450000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 1.677183e-02	ci left: 5.177105e-01	ci right 5.264869e-01	k: 26105	n:50000
KS ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
FOXK1   50000 perm   10 sec   (4946 perm/sec)   p_kst 2.600000e-04   p_cons 5.221000e-01   p_joint 2.180000e-03

Joint ci ratio: 4.199598e-01	ci left: 1.146637e-03	ci right 1.769857e-03	k: 86	n:60000
Cons ci ratio: 1.527790e-02	ci left: 5.191608e-01	ci right 5.271703e-01	k: 31390	n:60000
KS ci ratio: 1.047533e+00	ci left: 1.153708e-04	ci right 3.704781e-04	k: 13	n:60000
FOXK1   60000 perm   12 sec   (4837 perm/sec)   p_kst 2.166667e-04   p_cons 5.231667e-01   p_joint 1.433333e-03

Joint ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
Cons ci ratio: 1.414530e-02	ci left: 5.194348e-01	ci right 5.268490e-01	k: 36620	n:70000
KS ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
FOXK1   70000 perm   15 sec   (4740 perm/sec)   p_kst 2.285714e-04   p_cons 5.231429e-01   p_joint 1.200000e-03

Joint ci ratio: 5.382717e-01	ci left: 4.854880e-04	ci right 8.523023e-04	k: 52	n:80000
Cons ci ratio: 1.323621e-02	ci left: 5.195069e-01	ci right 5.264415e-01	k: 41838	n:80000
KS ci ratio: 8.552965e-01	ci left: 1.527130e-04	ci right 3.860784e-04	k: 20	n:80000
FOXK1   80000 perm   17 sec   (4655 perm/sec)   p_kst 2.500000e-04   p_cons 5.229750e-01   p_joint 6.500000e-04

Joint ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
Cons ci ratio: 1.248362e-02	ci left: 5.195305e-01	ci right 5.260680e-01	k: 47052	n:90000
KS ci ratio: 8.172675e-01	ci left: 1.531982e-04	ci right 3.700686e-04	k: 22	n:90000
FOXK1   90000 perm   20 sec   (4574 perm/sec)   p_kst 2.444444e-04   p_cons 5.228000e-01   p_joint 6.111111e-04

Joint ci ratio: 5.017490e-01	ci left: 4.578935e-04	ci right 7.722524e-04	k: 60	n:100000
Cons ci ratio: 1.182831e-02	ci left: 5.203188e-01	ci right 5.265199e-01	k: 52342	n:100000
KS ci ratio: 8.000666e-01	ci left: 1.458057e-04	ci right 3.450931e-04	k: 23	n:100000
FOXK1   100000 perm   22 sec   (4499 perm/sec)   p_kst 2.300000e-04   p_cons 5.234200e-01   p_joint 6.000000e-04

Joint ci ratio: 4.860703e-01	ci left: 4.480988e-04	ci right 7.429090e-04	k: 64	n:110000
Cons ci ratio: 1.128325e-02	ci left: 5.202251e-01	ci right 5.261373e-01	k: 57550	n:110000
KS ci ratio: 7.686809e-01	ci left: 1.470842e-04	ci right 3.354812e-04	k: 25	n:110000
FOXK1   110000 perm   25 sec   (4422 perm/sec)   p_kst 2.272727e-04   p_cons 5.231818e-01   p_joint 5.818182e-04

Joint ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
Cons ci ratio: 1.079583e-02	ci left: 5.206778e-01	ci right 5.263377e-01	k: 62821	n:120000
KS ci ratio: 7.543163e-01	ci left: 1.415386e-04	ci right 3.174509e-04	k: 26	n:120000
FOXK1   120000 perm   28 sec   (4349 perm/sec)   p_kst 2.166667e-04   p_cons 5.235083e-01   p_joint 5.416667e-04

Joint ci ratio: 2.729018e-01	ci left: 1.368571e-03	ci right 1.807988e-03	k: 205	n:130000
Cons ci ratio: 1.036945e-02	ci left: 5.209269e-01	ci right 5.263644e-01	k: 68074	n:130000
KS ci ratio: 6.928767e-01	ci left: 1.620286e-04	ci right 3.384602e-04	k: 31	n:130000
FOXK1   130000 perm   30 sec   (4280 perm/sec)   p_kst 2.384615e-04   p_cons 5.236462e-01   p_joint 1.576923e-03

Joint ci ratio: 2.617055e-01	ci left: 1.390777e-03	ci right 1.816007e-03	k: 223	n:140000
Cons ci ratio: 1.000635e-02	ci left: 5.203225e-01	ci right 5.255623e-01	k: 73212	n:140000
KS ci ratio: 6.928830e-01	ci left: 1.504548e-04	ci right 3.142856e-04	k: 31	n:140000
FOXK1   140000 perm   33 sec   (4215 perm/sec)   p_kst 2.214286e-04   p_cons 5.229429e-01   p_joint 1.592857e-03

Joint ci ratio: 2.517830e-01	ci left: 1.410341e-03	ci right 1.822641e-03	k: 241	n:150000
Cons ci ratio: 9.656530e-03	ci left: 5.209554e-01	ci right 5.260170e-01	k: 78523	n:150000
KS ci ratio: 6.823071e-01	ci left: 1.459243e-04	ci right 3.011498e-04	k: 32	n:150000
FOXK1   150000 perm   36 sec   (4155 perm/sec)   p_kst 2.133333e-04   p_cons 5.234867e-01   p_joint 1.606667e-03

Joint ci ratio: 2.419793e-01	ci left: 1.439467e-03	ci right 1.841438e-03	k: 261	n:160000
Cons ci ratio: 9.335722e-03	ci left: 5.217931e-01	ci right 5.266935e-01	k: 83879	n:160000
KS ci ratio: 6.443675e-01	ci left: 1.575921e-04	ci right 3.114814e-04	k: 36	n:160000
FOXK1   160000 perm   39 sec   (4087 perm/sec)   p_kst 2.250000e-04   p_cons 5.242438e-01   p_joint 1.631250e-03

Joint ci ratio: 2.397109e-01	ci left: 1.382424e-03	ci right 1.764309e-03	k: 266	n:170000
Cons ci ratio: 9.062587e-03	ci left: 5.215579e-01	ci right 5.263119e-01	k: 89069	n:170000
KS ci ratio: 6.443720e-01	ci left: 1.483217e-04	ci right 2.931597e-04	k: 36	n:170000
FOXK1   170000 perm   42 sec   (4029 perm/sec)   p_kst 2.117647e-04   p_cons 5.239353e-01   p_joint 1.564706e-03

Joint ci ratio: 2.424653e-01	ci left: 1.274294e-03	ci right 1.630961e-03	k: 260	n:180000
Cons ci ratio: 8.811509e-03	ci left: 5.213841e-01	ci right 5.260041e-01	k: 94265	n:180000
KS ci ratio: 6.276326e-01	ci left: 1.493990e-04	ci right 2.897551e-04	k: 38	n:180000
FOXK1   180000 perm   45 sec   (3966 perm/sec)   p_kst 2.111111e-04   p_cons 5.236944e-01   p_joint 1.444444e-03

Joint ci ratio: 2.392825e-01	ci left: 1.241842e-03	ci right 1.584187e-03	k: 267	n:190000
Cons ci ratio: 8.568170e-03	ci left: 5.219304e-01	ci right 5.264268e-01	k: 99594	n:190000
KS ci ratio: 6.197395e-01	ci left: 1.459661e-04	ci right 2.805909e-04	k: 39	n:190000
FOXK1   190000 perm   49 sec   (3909 perm/sec)   p_kst 2.052632e-04   p_cons 5.241789e-01   p_joint 1.405263e-03

Joint ci ratio: 2.467806e-01	ci left: 1.104611e-03	ci right 1.420130e-03	k: 251	n:200000
Cons ci ratio: 8.345347e-03	ci left: 5.223385e-01	ci right 5.267208e-01	k: 104906	n:200000
KS ci ratio: 6.048041e-01	ci left: 1.471154e-04	ci right 2.780955e-04	k: 41	n:200000
FOXK1   200000 perm   52 sec   (3851 perm/sec)   p_kst 2.050000e-04   p_cons 5.245300e-01   p_joint 1.255000e-03

Joint ci ratio: 2.420267e-01	ci left: 1.096713e-03	ci right 1.403035e-03	k: 261	n:210000
Cons ci ratio: 8.141142e-03	ci left: 5.225805e-01	ci right 5.268570e-01	k: 110191	n:210000
KS ci ratio: 5.977318e-01	ci left: 1.441461e-04	ci right 2.703324e-04	k: 42	n:210000
FOXK1   210000 perm   55 sec   (3797 perm/sec)   p_kst 2.000000e-04   p_cons 5.247190e-01   p_joint 1.242857e-03

Joint ci ratio: 2.375374e-01	ci left: 1.089585e-03	ci right 1.387442e-03	k: 271	n:220000
Cons ci ratio: 7.954270e-03	ci left: 5.226106e-01	ci right 5.267887e-01	k: 115434	n:220000
KS ci ratio: 5.977346e-01	ci left: 1.375938e-04	ci right 2.580450e-04	k: 42	n:220000
FOXK1   220000 perm   59 sec   (3745 perm/sec)   p_kst 1.909091e-04   p_cons 5.247000e-01   p_joint 1.231818e-03

Joint ci ratio: 2.492891e-01	ci left: 9.401327e-04	ci right 1.211823e-03	k: 246	n:230000
Cons ci ratio: 7.780449e-03	ci left: 5.225914e-01	ci right 5.266776e-01	k: 120666	n:230000
KS ci ratio: 5.909044e-01	ci left: 1.353046e-04	ci right 2.518210e-04	k: 43	n:230000
FOXK1   230000 perm   62 sec   (3694 perm/sec)   p_kst 1.869565e-04   p_cons 5.246348e-01   p_joint 1.069565e-03

Joint ci ratio: 2.763791e-01	ci left: 7.218758e-04	ci right 9.571156e-04	k: 200	n:240000
Cons ci ratio: 7.615256e-03	ci left: 5.227247e-01	ci right 5.267247e-01	k: 125934	n:240000
KS ci ratio: 5.599417e-01	ci left: 1.474678e-04	ci right 2.651623e-04	k: 48	n:240000
FOXK1   240000 perm   66 sec   (3644 perm/sec)   p_kst 2.000000e-04   p_cons 5.247250e-01   p_joint 8.333333e-04

Joint ci ratio: 2.697495e-01	ci left: 7.302631e-04	ci right 9.615620e-04	k: 210	n:250000
Cons ci ratio: 7.458003e-03	ci left: 5.229922e-01	ci right 5.269112e-01	k: 131238	n:250000
KS ci ratio: 5.435486e-01	ci left: 1.518951e-04	ci right 2.682137e-04	k: 51	n:250000
FOXK1   250000 perm   70 sec   (3593 perm/sec)   p_kst 2.040000e-04   p_cons 5.249520e-01   p_joint 8.400000e-04

Joint ci ratio: 3.348193e-01	ci left: 4.388810e-04	ci right 6.187118e-04	k: 136	n:260000
Cons ci ratio: 7.309371e-03	ci left: 5.232899e-01	ci right 5.271326e-01	k: 136555	n:260000
KS ci ratio: 5.435508e-01	ci left: 1.460528e-04	ci right 2.578981e-04	k: 51	n:260000
FOXK1   260000 perm   73 sec   (3548 perm/sec)   p_kst 1.961538e-04   p_cons 5.252115e-01   p_joint 5.230769e-04

Joint ci ratio: 3.288720e-01	ci left: 4.396020e-04	ci right 6.158524e-04	k: 141	n:270000
Cons ci ratio: 7.172423e-03	ci left: 5.233476e-01	ci right 5.271185e-01	k: 141813	n:270000
KS ci ratio: 5.333901e-01	ci left: 1.470427e-04	ci right 2.567526e-04	k: 53	n:270000
FOXK1   270000 perm   77 sec   (3504 perm/sec)   p_kst 1.962963e-04   p_cons 5.252333e-01   p_joint 5.222222e-04

Joint ci ratio: 3.221363e-01	ci left: 4.435800e-04	ci right 6.170308e-04	k: 147	n:280000
Cons ci ratio: 7.048041e-03	ci left: 5.230376e-01	ci right 5.267405e-01	k: 146969	n:280000
KS ci ratio: 5.237787e-01	ci left: 1.479802e-04	ci right 2.556712e-04	k: 55	n:280000
FOXK1   280000 perm   81 sec   (3459 perm/sec)   p_kst 1.964286e-04   p_cons 5.248893e-01   p_joint 5.250000e-04

Joint ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
Cons ci ratio: 6.928614e-03	ci left: 5.228425e-01	ci right 5.264811e-01	k: 152152	n:290000
KS ci ratio: 5.191648e-01	ci left: 1.458715e-04	ci right 2.507537e-04	k: 56	n:290000
FOXK1   290000 perm   85 sec   (3417 perm/sec)   p_kst 1.931034e-04   p_cons 5.246621e-01   p_joint 5.206897e-04

Joint ci ratio: 3.117758e-01	ci left: 4.446906e-04	ci right 6.118710e-04	k: 157	n:300000
Cons ci ratio: 6.812962e-03	ci left: 5.228144e-01	ci right 5.263918e-01	k: 157381	n:300000
KS ci ratio: 5.191665e-01	ci left: 1.410090e-04	ci right 2.423954e-04	k: 56	n:300000
FOXK1   300000 perm   89 sec   (3375 perm/sec)   p_kst 1.866667e-04   p_cons 5.246033e-01   p_joint 5.233333e-04

Joint ci ratio: 3.189269e-01	ci left: 4.095506e-04	ci right 5.677735e-04	k: 150	n:310000
Cons ci ratio: 6.700400e-03	ci left: 5.229757e-01	ci right 5.264948e-01	k: 162668	n:310000
KS ci ratio: 5.191681e-01	ci left: 1.364602e-04	ci right 2.345764e-04	k: 56	n:310000
FOXK1   310000 perm   93 sec   (3335 perm/sec)   p_kst 1.806452e-04   p_cons 5.247355e-01   p_joint 4.838710e-04

Joint ci ratio: 3.158061e-01	ci left: 4.053803e-04	ci right 5.601501e-04	k: 153	n:320000
Cons ci ratio: 6.591958e-03	ci left: 5.232242e-01	ci right 5.266878e-01	k: 167986	n:320000
KS ci ratio: 5.146738e-01	ci left: 1.349128e-04	ci right 2.307755e-04	k: 57	n:320000
FOXK1   320000 perm   97 sec   (3295 perm/sec)   p_kst 1.781250e-04   p_cons 5.249563e-01   p_joint 4.781250e-04

Joint ci ratio: 3.117833e-01	ci left: 4.042628e-04	ci right 5.562486e-04	k: 157	n:330000
Cons ci ratio: 6.490585e-03	ci left: 5.233066e-01	ci right 5.267172e-01	k: 173254	n:330000
KS ci ratio: 5.060230e-01	ci left: 1.361043e-04	ci right 2.306174e-04	k: 59	n:330000
FOXK1   330000 perm   101 sec   (3256 perm/sec)   p_kst 1.787879e-04   p_cons 5.250121e-01   p_joint 4.757576e-04

Joint ci ratio: 3.348402e-01	ci left: 3.356117e-04	ci right 4.731379e-04	k: 136	n:340000
Cons ci ratio: 6.392279e-03	ci left: 5.234992e-01	ci right 5.268592e-01	k: 178561	n:340000
KS ci ratio: 4.938271e-01	ci left: 1.398117e-04	ci right 2.337622e-04	k: 62	n:340000
FOXK1   340000 perm   106 sec   (3220 perm/sec)   p_kst 1.823529e-04   p_cons 5.251794e-01   p_joint 4.000000e-04

Joint ci ratio: 3.300566e-01	ci left: 3.364976e-04	ci right 4.719987e-04	k: 140	n:350000
Cons ci ratio: 6.297225e-03	ci left: 5.237669e-01	ci right 5.270784e-01	k: 183898	n:350000
KS ci ratio: 4.899545e-01	ci left: 1.383196e-04	ci right 2.302924e-04	k: 63	n:350000
FOXK1   350000 perm   110 sec   (3184 perm/sec)   p_kst 1.800000e-04   p_cons 5.254229e-01   p_joint 4.000000e-04

Joint ci ratio: 3.254723e-01	ci left: 3.373474e-04	ci right 4.709097e-04	k: 144	n:360000
Cons ci ratio: 6.209883e-03	ci left: 5.237311e-01	ci right 5.269963e-01	k: 189131	n:360000
KS ci ratio: 4.824737e-01	ci left: 1.393516e-04	ci right 2.301272e-04	k: 65	n:360000
FOXK1   360000 perm   114 sec   (3148 perm/sec)   p_kst 1.805556e-04   p_cons 5.253639e-01   p_joint 4.000000e-04

Joint ci ratio: 3.221571e-01	ci left: 3.356790e-04	ci right 4.669474e-04	k: 147	n:370000
Cons ci ratio: 6.123786e-03	ci left: 5.238841e-01	ci right 5.271047e-01	k: 194433	n:370000
KS ci ratio: 4.788602e-01	ci left: 1.379604e-04	ci right 2.269355e-04	k: 66	n:370000
FOXK1   370000 perm   119 sec   (3113 perm/sec)   p_kst 1.783784e-04   p_cons 5.254946e-01   p_joint 3.972973e-04

Joint ci ratio: 3.266043e-01	ci left: 3.171755e-04	ci right 4.432797e-04	k: 143	n:380000
Cons ci ratio: 6.041715e-03	ci left: 5.239845e-01	ci right 5.271625e-01	k: 199718	n:380000
KS ci ratio: 4.788614e-01	ci left: 1.343298e-04	ci right 2.209637e-04	k: 66	n:380000
FOXK1   380000 perm   123 sec   (3078 perm/sec)   p_kst 1.736842e-04   p_cons 5.255737e-01   p_joint 3.763158e-04

Joint ci ratio: 3.254773e-01	ci left: 3.113969e-04	ci right 4.346871e-04	k: 144	n:390000
Cons ci ratio: 5.964544e-03	ci left: 5.239390e-01	ci right 5.270760e-01	k: 204948	n:390000
KS ci ratio: 4.753278e-01	ci left: 1.331411e-04	ci right 2.181684e-04	k: 67	n:390000
FOXK1   390000 perm   128 sec   (3044 perm/sec)   p_kst 1.717949e-04   p_cons 5.255077e-01   p_joint 3.692308e-04

Joint ci ratio: 3.221620e-01	ci left: 3.105023e-04	ci right 4.319275e-04	k: 147	n:400000
Cons ci ratio: 5.888987e-03	ci left: 5.240036e-01	ci right 5.271010e-01	k: 210221	n:400000
KS ci ratio: 4.718713e-01	ci left: 1.320140e-04	ci right 2.155106e-04	k: 68	n:400000
FOXK1   400000 perm   133 sec   (3012 perm/sec)   p_kst 1.700000e-04   p_cons 5.255525e-01   p_joint 3.675000e-04

Joint ci ratio: 3.168537e-01	ci left: 3.141465e-04	ci right 4.345623e-04	k: 152	n:410000
Cons ci ratio: 5.817140e-03	ci left: 5.239872e-01	ci right 5.270466e-01	k: 215462	n:410000
KS ci ratio: 4.619353e-01	ci left: 1.352502e-04	ci right 2.184264e-04	k: 71	n:410000
FOXK1   410000 perm   138 sec   (2980 perm/sec)   p_kst 1.731707e-04   p_cons 5.255171e-01   p_joint 3.707317e-04

Joint ci ratio: 3.148035e-01	ci left: 3.110512e-04	ci right 4.293539e-04	k: 154	n:420000
Cons ci ratio: 5.748382e-03	ci left: 5.239265e-01	ci right 5.269493e-01	k: 220684	n:420000
KS ci ratio: 4.587609e-01	ci left: 1.341346e-04	ci right 2.158811e-04	k: 72	n:420000
FOXK1   420000 perm   142 sec   (2949 perm/sec)   p_kst 1.714286e-04   p_cons 5.254381e-01   p_joint 3.666667e-04

Joint ci ratio: 3.088811e-01	ci left: 3.166793e-04	ci right 4.344105e-04	k: 160	n:430000
Cons ci ratio: 5.684073e-03	ci left: 5.236875e-01	ci right 5.266749e-01	k: 225828	n:430000
KS ci ratio: 4.526026e-01	ci left: 1.351324e-04	ci right 2.160423e-04	k: 74	n:430000
FOXK1   430000 perm   147 sec   (2918 perm/sec)   p_kst 1.720930e-04   p_cons 5.251814e-01   p_joint 3.720930e-04

Joint ci ratio: 3.060432e-01	ci left: 3.157743e-04	ci right 4.318802e-04	k: 163	n:440000
Cons ci ratio: 5.619157e-03	ci left: 5.237005e-01	ci right 5.266537e-01	k: 231078	n:440000
KS ci ratio: 4.526035e-01	ci left: 1.320611e-04	ci right 2.111323e-04	k: 74	n:440000
FOXK1   440000 perm   152 sec   (2888 perm/sec)   p_kst 1.681818e-04   p_cons 5.251773e-01   p_joint 3.704545e-04

Joint ci ratio: 2.997126e-01	ci left: 3.231310e-04	ci right 4.390165e-04	k: 170	n:450000
Cons ci ratio: 5.556737e-03	ci left: 5.236842e-01	ci right 5.266044e-01	k: 236315	n:450000
KS ci ratio: 4.409953e-01	ci left: 1.370151e-04	ci right 2.163232e-04	k: 78	n:450000
FOXK1   450000 perm   157 sec   (2858 perm/sec)   p_kst 1.733333e-04   p_cons 5.251444e-01   p_joint 3.777778e-04

Joint ci ratio: 2.945882e-01	ci left: 3.281778e-04	ci right 4.434854e-04	k: 176	n:460000
Cons ci ratio: 5.493478e-03	ci left: 5.239296e-01	ci right 5.268179e-01	k: 241672	n:460000
KS ci ratio: 4.328525e-01	ci left: 1.398408e-04	ci right 2.188553e-04	k: 81	n:460000
FOXK1   460000 perm   163 sec   (2829 perm/sec)   p_kst 1.760870e-04   p_cons 5.253739e-01   p_joint 3.826087e-04

Joint ci ratio: 2.913149e-01	ci left: 3.290806e-04	ci right 4.431837e-04	k: 180	n:470000
Cons ci ratio: 5.436966e-03	ci left: 5.237392e-01	ci right 5.265966e-01	k: 246829	n:470000
KS ci ratio: 4.276684e-01	ci left: 1.406599e-04	ci right 2.189124e-04	k: 83	n:470000
FOXK1   470000 perm   168 sec   (2801 perm/sec)   p_kst 1.765957e-04   p_cons 5.251681e-01   p_joint 3.829787e-04

Joint ci ratio: 2.913161e-01	ci left: 3.222246e-04	ci right 4.339510e-04	k: 180	n:480000
Cons ci ratio: 5.377869e-03	ci left: 5.239549e-01	ci right 5.267823e-01	k: 252177	n:480000
KS ci ratio: 4.226662e-01	ci left: 1.414503e-04	ci right 2.189617e-04	k: 85	n:480000
FOXK1   480000 perm   173 sec   (2773 perm/sec)   p_kst 1.770833e-04   p_cons 5.253688e-01   p_joint 3.750000e-04

Joint ci ratio: 2.889317e-01	ci left: 3.213256e-04	ci right 4.316616e-04	k: 183	n:490000
Cons ci ratio: 5.326059e-03	ci left: 5.236557e-01	ci right 5.264542e-01	k: 257277	n:490000
KS ci ratio: 4.202304e-01	ci left: 1.403878e-04	ci right 2.167492e-04	k: 86	n:490000
FOXK1   490000 perm   178 sec   (2746 perm/sec)   p_kst 1.755102e-04   p_cons 5.250551e-01   p_joint 3.734694e-04

Joint ci ratio: 2.843324e-01	ci left: 3.260366e-04	ci right 4.358885e-04	k: 189	n:500000
Cons ci ratio: 5.271696e-03	ci left: 5.237487e-01	ci right 5.265190e-01	k: 262567	n:500000
KS ci ratio: 4.131667e-01	ci left: 1.429510e-04	ci right 2.190398e-04	k: 89	n:500000
FOXK1   500000 perm   184 sec   (2720 perm/sec)   p_kst 1.780000e-04   p_cons 5.251340e-01   p_joint 3.780000e-04

Joint ci ratio: 1.989319e-01	ci left: 6.851200e-04	ci right 8.382903e-04	k: 387	n:510000
Cons ci ratio: 5.219784e-03	ci left: 5.237597e-01	ci right 5.265027e-01	k: 267817	n:510000
KS ci ratio: 4.526089e-01	ci left: 1.139348e-04	ci right 1.821539e-04	k: 74	n:510000
FOXK1   510000 perm   189 sec   (2694 perm/sec)   p_kst 1.450980e-04   p_cons 5.251314e-01   p_joint 7.588235e-04

Joint ci ratio: 1.976629e-01	ci left: 6.810825e-04	ci right 8.322617e-04	k: 392	n:520000
Cons ci ratio: 5.168360e-03	ci left: 5.238686e-01	ci right 5.265850e-01	k: 273118	n:520000
KS ci ratio: 4.526095e-01	ci left: 1.117437e-04	ci right 1.786510e-04	k: 74	n:520000
FOXK1   520000 perm   195 sec   (2668 perm/sec)   p_kst 1.423077e-04   p_cons 5.252269e-01   p_joint 7.538462e-04

Joint ci ratio: 1.951947e-01	ci left: 6.861721e-04	ci right 8.363531e-04	k: 402	n:530000
Cons ci ratio: 5.120286e-03	ci left: 5.237923e-01	ci right 5.264829e-01	k: 278323	n:530000
KS ci ratio: 4.496222e-01	ci left: 1.113077e-04	ci right 1.773801e-04	k: 75	n:530000
FOXK1   530000 perm   200 sec   (2643 perm/sec)   p_kst 1.415094e-04   p_cons 5.251377e-01   p_joint 7.584906e-04

Joint ci ratio: 1.935213e-01	ci left: 6.857974e-04	ci right 8.344581e-04	k: 409	n:540000
Cons ci ratio: 5.072266e-03	ci left: 5.238430e-01	ci right 5.265086e-01	k: 283595	n:540000
KS ci ratio: 4.438201e-01	ci left: 1.125334e-04	ci right 1.782131e-04	k: 77	n:540000
FOXK1   540000 perm   206 sec   (2620 perm/sec)   p_kst 1.425926e-04   p_cons 5.251759e-01   p_joint 7.574074e-04

Joint ci ratio: 1.932869e-01	ci left: 6.750581e-04	ci right 8.211927e-04	k: 410	n:550000
Cons ci ratio: 5.026635e-03	ci left: 5.237865e-01	ci right 5.264278e-01	k: 288809	n:550000
KS ci ratio: 4.382371e-01	ci left: 1.137199e-04	ci right 1.790106e-04	k: 79	n:550000
FOXK1   550000 perm   212 sec   (2597 perm/sec)   p_kst 1.436364e-04   p_cons 5.251073e-01   p_joint 7.454545e-04

Joint ci ratio: 1.912045e-01	ci left: 6.783016e-04	ci right 8.233725e-04	k: 419	n:560000
Cons ci ratio: 4.980020e-03	ci left: 5.239518e-01	ci right 5.265694e-01	k: 294146	n:560000
KS ci ratio: 4.355237e-01	ci left: 1.132784e-04	ci right 1.777950e-04	k: 80	n:560000
FOXK1   560000 perm   218 sec   (2573 perm/sec)   p_kst 1.428571e-04   p_cons 5.252607e-01   p_joint 7.482143e-04

Joint ci ratio: 1.937618e-01	ci left: 6.480322e-04	ci right 7.887016e-04	k: 408	n:570000
Cons ci ratio: 4.936084e-03	ci left: 5.239693e-01	ci right 5.265638e-01	k: 299402	n:570000
KS ci ratio: 4.302442e-01	ci left: 1.144174e-04	ci right 1.785647e-04	k: 82	n:570000
FOXK1   570000 perm   223 sec   (2550 perm/sec)   p_kst 1.438596e-04   p_cons 5.252667e-01   p_joint 7.157895e-04

Joint ci ratio: 1.925886e-01	ci left: 6.450629e-04	ci right 7.841405e-04	k: 413	n:580000
Cons ci ratio: 4.893662e-03	ci left: 5.239484e-01	ci right 5.265204e-01	k: 304636	n:580000
KS ci ratio: 4.251522e-01	ci left: 1.155217e-04	ci right 1.793033e-04	k: 84	n:580000
FOXK1   580000 perm   230 sec   (2527 perm/sec)   p_kst 1.448276e-04   p_cons 5.252345e-01   p_joint 7.120690e-04

Joint ci ratio: 1.932918e-01	ci left: 6.292900e-04	ci right 7.655206e-04	k: 410	n:590000
Cons ci ratio: 4.852695e-03	ci left: 5.238892e-01	ci right 5.264393e-01	k: 309847	n:590000
KS ci ratio: 4.251527e-01	ci left: 1.135637e-04	ci right 1.762643e-04	k: 84	n:590000
FOXK1   590000 perm   236 sec   (2505 perm/sec)   p_kst 1.423729e-04   p_cons 5.251644e-01   p_joint 6.949153e-04

Joint ci ratio: 1.916665e-01	ci left: 6.299063e-04	ci right 7.649901e-04	k: 417	n:600000
Cons ci ratio: 4.812740e-03	ci left: 5.238322e-01	ci right 5.263609e-01	k: 315058	n:600000
KS ci ratio: 4.202373e-01	ci left: 1.146497e-04	ci right 1.770125e-04	k: 86	n:600000
FOXK1   600000 perm   242 sec   (2483 perm/sec)   p_kst 1.433333e-04   p_cons 5.250967e-01   p_joint 6.950000e-04

Joint ci ratio: 1.896355e-01	ci left: 6.336300e-04	ci right 7.679066e-04	k: 426	n:610000
Cons ci ratio: 4.772893e-03	ci left: 5.238672e-01	ci right 5.263752e-01	k: 320324	n:610000
KS ci ratio: 4.202378e-01	ci left: 1.127702e-04	ci right 1.741107e-04	k: 86	n:610000
FOXK1   610000 perm   248 sec   (2461 perm/sec)   p_kst 1.409836e-04   p_cons 5.251213e-01   p_joint 6.983607e-04

Joint ci ratio: 1.874528e-01	ci left: 6.387781e-04	ci right 7.724102e-04	k: 436	n:620000
Cons ci ratio: 4.734218e-03	ci left: 5.238803e-01	ci right 5.263679e-01	k: 325577	n:620000
KS ci ratio: 4.131740e-01	ci left: 1.152827e-04	ci right 1.766457e-04	k: 89	n:620000
FOXK1   620000 perm   254 sec   (2440 perm/sec)   p_kst 1.435484e-04   p_cons 5.251242e-01   p_joint 7.032258e-04

Joint ci ratio: 1.866012e-01	ci left: 6.346906e-04	ci right 7.667961e-04	k: 440	n:630000
Cons ci ratio: 4.695452e-03	ci left: 5.240009e-01	ci right 5.264687e-01	k: 330898	n:630000
KS ci ratio: 4.131744e-01	ci left: 1.134528e-04	ci right 1.738419e-04	k: 89	n:630000
FOXK1   630000 perm   260 sec   (2419 perm/sec)   p_kst 1.412698e-04   p_cons 5.252349e-01   p_joint 6.984127e-04

Joint ci ratio: 1.866022e-01	ci left: 6.247732e-04	ci right 7.548153e-04	k: 440	n:640000
Cons ci ratio: 4.657462e-03	ci left: 5.241351e-01	ci right 5.265834e-01	k: 336230	n:640000
KS ci ratio: 4.108981e-01	ci left: 1.130806e-04	ci right 1.728492e-04	k: 90	n:640000
FOXK1   640000 perm   267 sec   (2399 perm/sec)   p_kst 1.406250e-04   p_cons 5.253594e-01   p_joint 6.875000e-04

Joint ci ratio: 2.077025e-01	ci left: 4.908248e-04	ci right 6.060101e-04	k: 355	n:650000
Cons ci ratio: 4.620736e-03	ci left: 5.242267e-01	ci right 5.266561e-01	k: 341537	n:650000
KS ci ratio: 4.108986e-01	ci left: 1.113409e-04	ci right 1.701900e-04	k: 90	n:650000
FOXK1   650000 perm   273 sec   (2379 perm/sec)   p_kst 1.384615e-04   p_cons 5.254415e-01   p_joint 5.461538e-04

Joint ci ratio: 2.051253e-01	ci left: 4.963198e-04	ci right 6.111682e-04	k: 364	n:660000
Cons ci ratio: 4.586452e-03	ci left: 5.241429e-01	ci right 5.265539e-01	k: 346730	n:660000
KS ci ratio: 4.086595e-01	ci left: 1.110128e-04	ci right 1.692819e-04	k: 91	n:660000
FOXK1   660000 perm   280 sec   (2359 perm/sec)   p_kst 1.378788e-04   p_cons 5.253485e-01   p_joint 5.515152e-04

Joint ci ratio: 2.031860e-01	ci left: 4.988257e-04	ci right 6.130273e-04	k: 371	n:670000
Cons ci ratio: 4.551572e-03	ci left: 5.242094e-01	ci right 5.266023e-01	k: 352022	n:670000
KS ci ratio: 4.042885e-01	ci left: 1.120357e-04	ci right 1.700440e-04	k: 93	n:670000
FOXK1   670000 perm   286 sec   (2340 perm/sec)   p_kst 1.388060e-04   p_cons 5.254060e-01   p_joint 5.537313e-04

Joint ci ratio: 2.040115e-01	ci left: 4.873029e-04	ci right 5.993762e-04	k: 368	n:680000
Cons ci ratio: 4.517608e-03	ci left: 5.242594e-01	ci right 5.266345e-01	k: 357304	n:680000
KS ci ratio: 4.042889e-01	ci left: 1.103881e-04	ci right 1.675434e-04	k: 93	n:680000
FOXK1   680000 perm   293 sec   (2321 perm/sec)   p_kst 1.367647e-04   p_cons 5.254471e-01   p_joint 5.411765e-04

Joint ci ratio: 2.029149e-01	ci left: 4.857423e-04	ci right 5.967817e-04	k: 372	n:690000
Cons ci ratio: 4.483625e-03	ci left: 5.243934e-01	ci right 5.267513e-01	k: 362645	n:690000
KS ci ratio: 4.021555e-01	ci left: 1.100906e-04	ci right 1.667108e-04	k: 94	n:690000
FOXK1   690000 perm   300 sec   (2302 perm/sec)   p_kst 1.362319e-04   p_cons 5.255725e-01   p_joint 5.391304e-04

Joint ci ratio: 2.015685e-01	ci left: 4.855842e-04	ci right 5.957604e-04	k: 377	n:700000
Cons ci ratio: 4.451544e-03	ci left: 5.243951e-01	ci right 5.267361e-01	k: 367896	n:700000
KS ci ratio: 3.939467e-01	ci left: 1.136602e-04	ci right 1.706125e-04	k: 98	n:700000
FOXK1   700000 perm   307 sec   (2283 perm/sec)   p_kst 1.400000e-04   p_cons 5.255657e-01   p_joint 5.385714e-04

Joint ci ratio: 2.068372e-01	ci left: 4.533518e-04	ci right 5.592436e-04	k: 358	n:710000
Cons ci ratio: 4.419656e-03	ci left: 5.244518e-01	ci right 5.267762e-01	k: 373186	n:710000
KS ci ratio: 3.900266e-01	ci left: 1.145986e-04	ci right 1.713027e-04	k: 100	n:710000
FOXK1   710000 perm   313 sec   (2265 perm/sec)   p_kst 1.408451e-04   p_cons 5.256141e-01   p_joint 5.042254e-04

Joint ci ratio: 2.147648e-01	ci left: 4.128488e-04	ci right 5.134637e-04	k: 332	n:720000
Cons ci ratio: 4.388357e-03	ci left: 5.245166e-01	ci right 5.268248e-01	k: 378483	n:720000
KS ci ratio: 3.862212e-01	ci left: 1.155137e-04	ci right 1.719711e-04	k: 102	n:720000
FOXK1   720000 perm   320 sec   (2247 perm/sec)   p_kst 1.416667e-04   p_cons 5.256708e-01   p_joint 4.611111e-04

Joint ci ratio: 2.131704e-01	ci left: 4.136756e-04	ci right 5.136457e-04	k: 337	n:730000
Cons ci ratio: 4.357654e-03	ci left: 5.245866e-01	ci right 5.268789e-01	k: 383785	n:730000
KS ci ratio: 3.843600e-01	ci left: 1.151685e-04	ci right 1.711172e-04	k: 103	n:730000
FOXK1   730000 perm   327 sec   (2229 perm/sec)   p_kst 1.410959e-04   p_cons 5.257329e-01   p_joint 4.616438e-04

Joint ci ratio: 2.113030e-01	ci left: 4.157626e-04	ci right 5.152429e-04	k: 343	n:740000
Cons ci ratio: 4.327645e-03	ci left: 5.246480e-01	ci right 5.269247e-01	k: 389082	n:740000
KS ci ratio: 3.825254e-01	ci left: 1.148332e-04	ci right 1.702859e-04	k: 104	n:740000
FOXK1   740000 perm   335 sec   (2211 perm/sec)   p_kst 1.405405e-04   p_cons 5.257865e-01   p_joint 4.635135e-04

Joint ci ratio: 2.088875e-01	ci left: 4.203247e-04	ci right 5.195999e-04	k: 351	n:750000
Cons ci ratio: 4.297673e-03	ci left: 5.247745e-01	ci right 5.270360e-01	k: 394429	n:750000
KS ci ratio: 3.771748e-01	ci left: 1.169202e-04	ci right 1.723955e-04	k: 107	n:750000
FOXK1   750000 perm   342 sec   (2194 perm/sec)   p_kst 1.426667e-04   p_cons 5.259053e-01   p_joint 4.680000e-04

Joint ci ratio: 2.071295e-01	ci left: 4.222777e-04	ci right 5.210684e-04	k: 357	n:760000
Cons ci ratio: 4.269858e-03	ci left: 5.247174e-01	ci right 5.269640e-01	k: 399639	n:760000
KS ci ratio: 3.737300e-01	ci left: 1.177650e-04	ci right 1.730059e-04	k: 109	n:760000
FOXK1   760000 perm   349 sec   (2177 perm/sec)   p_kst 1.434211e-04   p_cons 5.258408e-01   p_joint 4.697368e-04

Joint ci ratio: 2.062673e-01	ci left: 4.204880e-04	ci right 5.183988e-04	k: 360	n:770000
Cons ci ratio: 4.242366e-03	ci left: 5.246865e-01	ci right 5.269185e-01	k: 404868	n:770000
KS ci ratio: 3.737304e-01	ci left: 1.162356e-04	ci right 1.707591e-04	k: 109	n:770000
FOXK1   770000 perm   356 sec   (2160 perm/sec)   p_kst 1.415584e-04   p_cons 5.258026e-01   p_joint 4.675325e-04

Joint ci ratio: 2.042958e-01	ci left: 4.236102e-04	ci right 5.211876e-04	k: 367	n:780000
Cons ci ratio: 4.215908e-03	ci left: 5.245962e-01	ci right 5.268138e-01	k: 410050	n:780000
KS ci ratio: 3.687356e-01	ci left: 1.182328e-04	ci right 1.727733e-04	k: 112	n:780000
FOXK1   780000 perm   364 sec   (2144 perm/sec)   p_kst 1.435897e-04   p_cons 5.257051e-01   p_joint 4.705128e-04

Joint ci ratio: 2.021103e-01	ci left: 4.278595e-04	ci right 5.252313e-04	k: 375	n:790000
Cons ci ratio: 4.189194e-03	ci left: 5.245969e-01	ci right 5.268004e-01	k: 415302	n:790000
KS ci ratio: 3.639359e-01	ci left: 1.201841e-04	ci right 1.747317e-04	k: 115	n:790000
FOXK1   790000 perm   371 sec   (2128 perm/sec)   p_kst 1.455696e-04   p_cons 5.256987e-01   p_joint 4.746835e-04

Joint ci ratio: 2.015753e-01	ci left: 4.248848e-04	ci right 5.212922e-04	k: 377	n:800000
Cons ci ratio: 4.163085e-03	ci left: 5.245851e-01	ci right 5.267747e-01	k: 420544	n:800000
KS ci ratio: 3.623774e-01	ci left: 1.198177e-04	ci right 1.739112e-04	k: 116	n:800000
FOXK1   800000 perm   379 sec   (2112 perm/sec)   p_kst 1.450000e-04   p_cons 5.256800e-01   p_joint 4.712500e-04

Joint ci ratio: 1.999941e-01	ci left: 4.266744e-04	ci right 5.226357e-04	k: 383	n:810000
Cons ci ratio: 4.137367e-03	ci left: 5.245847e-01	ci right 5.267608e-01	k: 425795	n:810000
KS ci ratio: 3.593192e-01	ci left: 1.205838e-04	ci right 1.744562e-04	k: 118	n:810000
FOXK1   810000 perm   387 sec   (2095 perm/sec)   p_kst 1.456790e-04   p_cons 5.256728e-01   p_joint 4.728395e-04

Joint ci ratio: 1.981955e-01	ci left: 4.295822e-04	ci right 5.252236e-04	k: 390	n:820000
Cons ci ratio: 4.111888e-03	ci left: 5.246124e-01	ci right 5.267752e-01	k: 431069	n:820000
KS ci ratio: 3.578190e-01	ci left: 1.202229e-04	ci right 1.736576e-04	k: 119	n:820000
FOXK1   820000 perm   394 sec   (2080 perm/sec)   p_kst 1.451220e-04   p_cons 5.256939e-01   p_joint 4.756098e-04

Joint ci ratio: 1.966920e-01	ci left: 4.312781e-04	ci right 5.264814e-04	k: 396	n:830000
Cons ci ratio: 4.087299e-03	ci left: 5.245877e-01	ci right 5.267374e-01	k: 436300	n:830000
KS ci ratio: 3.563374e-01	ci left: 1.198712e-04	ci right 1.728778e-04	k: 120	n:830000
FOXK1   830000 perm   402 sec   (2064 perm/sec)   p_kst 1.445783e-04   p_cons 5.256627e-01   p_joint 4.771084e-04

Joint ci ratio: 1.959532e-01	ci left: 4.295397e-04	ci right 5.239606e-04	k: 399	n:840000
Cons ci ratio: 4.062699e-03	ci left: 5.246184e-01	ci right 5.267552e-01	k: 441577	n:840000
KS ci ratio: 3.534284e-01	ci left: 1.206129e-04	ci right 1.734120e-04	k: 122	n:840000
FOXK1   840000 perm   410 sec   (2049 perm/sec)   p_kst 1.452381e-04   p_cons 5.256869e-01   p_joint 4.750000e-04

Joint ci ratio: 1.944998e-01	ci left: 4.312001e-04	ci right 5.251997e-04	k: 405	n:850000
Cons ci ratio: 4.039034e-03	ci left: 5.245872e-01	ci right 5.267115e-01	k: 446802	n:850000
KS ci ratio: 3.534287e-01	ci left: 1.191939e-04	ci right 1.713719e-04	k: 122	n:850000
FOXK1   850000 perm   418 sec   (2033 perm/sec)   p_kst 1.435294e-04   p_cons 5.256494e-01   p_joint 4.764706e-04

Joint ci ratio: 1.632785e-01	ci left: 6.150811e-04	ci right 7.255363e-04	k: 575	n:860000
Cons ci ratio: 4.015824e-03	ci left: 5.245510e-01	ci right 5.266628e-01	k: 452022	n:860000
KS ci ratio: 3.478179e-01	ci left: 1.220495e-04	ci right 1.744383e-04	k: 126	n:860000
FOXK1   860000 perm   426 sec   (2018 perm/sec)   p_kst 1.465116e-04   p_cons 5.256070e-01   p_joint 6.686047e-04

Joint ci ratio: 1.624348e-01	ci left: 6.146267e-04	ci right 7.243742e-04	k: 581	n:870000
Cons ci ratio: 3.992891e-03	ci left: 5.245305e-01	ci right 5.266302e-01	k: 457255	n:870000
KS ci ratio: 3.464566e-01	ci left: 1.216959e-04	ci right 1.736825e-04	k: 127	n:870000
FOXK1   870000 perm   434 sec   (2003 perm/sec)   p_kst 1.459770e-04   p_cons 5.255805e-01   p_joint 6.678161e-04

Joint ci ratio: 1.705448e-01	ci left: 5.488323e-04	ci right 6.522281e-04	k: 527	n:880000
Cons ci ratio: 3.970210e-03	ci left: 5.245276e-01	ci right 5.266154e-01	k: 462503	n:880000
KS ci ratio: 3.424663e-01	ci left: 1.234272e-04	ci right 1.754117e-04	k: 130	n:880000
FOXK1   880000 perm   442 sec   (1990 perm/sec)   p_kst 1.477273e-04   p_cons 5.255716e-01   p_joint 5.988636e-04

Joint ci ratio: 1.707072e-01	ci left: 5.415899e-04	ci right 6.437284e-04	k: 526	n:890000
Cons ci ratio: 3.947760e-03	ci left: 5.245440e-01	ci right 5.266199e-01	k: 467768	n:890000
KS ci ratio: 3.411667e-01	ci left: 1.230675e-04	ci right 1.746605e-04	k: 131	n:890000
FOXK1   890000 perm   450 sec   (1976 perm/sec)   p_kst 1.471910e-04   p_cons 5.255820e-01   p_joint 5.910112e-04

Joint ci ratio: 1.694259e-01	ci left: 5.440828e-04	ci right 6.458427e-04	k: 534	n:900000
Cons ci ratio: 3.926228e-03	ci left: 5.244911e-01	ci right 5.265555e-01	k: 472971	n:900000
KS ci ratio: 3.386110e-01	ci left: 1.237327e-04	ci right 1.751310e-04	k: 133	n:900000
FOXK1   900000 perm   459 sec   (1963 perm/sec)   p_kst 1.477778e-04   p_cons 5.255233e-01   p_joint 5.933333e-04

Joint ci ratio: 1.687962e-01	ci left: 5.423134e-04	ci right 6.433270e-04	k: 538	n:910000
Cons ci ratio: 3.904392e-03	ci left: 5.245229e-01	ci right 5.265759e-01	k: 478250	n:910000
KS ci ratio: 3.386113e-01	ci left: 1.223729e-04	ci right 1.732065e-04	k: 133	n:910000
FOXK1   910000 perm   467 sec   (1949 perm/sec)   p_kst 1.461538e-04   p_cons 5.255495e-01   p_joint 5.912088e-04

Joint ci ratio: 1.750849e-01	ci left: 4.968902e-04	ci right 5.932562e-04	k: 500	n:920000
Cons ci ratio: 3.883262e-03	ci left: 5.245094e-01	ci right 5.265513e-01	k: 483488	n:920000
KS ci ratio: 3.373549e-01	ci left: 1.220375e-04	ci right 1.725027e-04	k: 134	n:920000
FOXK1   920000 perm   475 sec   (1937 perm/sec)   p_kst 1.456522e-04   p_cons 5.255304e-01   p_joint 5.434783e-04

Joint ci ratio: 1.740458e-01	ci left: 4.977170e-04	ci right 5.936103e-04	k: 506	n:930000
Cons ci ratio: 3.862106e-03	ci left: 5.245437e-01	ci right 5.265745e-01	k: 488770	n:930000
KS ci ratio: 3.361125e-01	ci left: 1.217096e-04	ci right 1.718137e-04	k: 135	n:930000
FOXK1   930000 perm   483 sec   (1924 perm/sec)   p_kst 1.451613e-04   p_cons 5.255591e-01   p_joint 5.440860e-04

Joint ci ratio: 1.740463e-01	ci left: 4.924221e-04	ci right 5.872954e-04	k: 506	n:940000
Cons ci ratio: 3.841611e-03	ci left: 5.245357e-01	ci right 5.265557e-01	k: 494013	n:940000
KS ci ratio: 3.336679e-01	ci left: 1.223636e-04	ci right 1.722918e-04	k: 137	n:940000
FOXK1   940000 perm   492 sec   (1911 perm/sec)   p_kst 1.457447e-04   p_cons 5.255457e-01   p_joint 5.382979e-04

Joint ci ratio: 1.733639e-01	ci left: 4.912661e-04	ci right 5.855068e-04	k: 510	n:950000
Cons ci ratio: 3.821544e-03	ci left: 5.245142e-01	ci right 5.265235e-01	k: 499243	n:950000
KS ci ratio: 3.324656e-01	ci left: 1.220402e-04	ci right 1.716185e-04	k: 138	n:950000
FOXK1   950000 perm   501 sec   (1898 perm/sec)   p_kst 1.452632e-04   p_cons 5.255189e-01   p_joint 5.368421e-04

Joint ci ratio: 1.720223e-01	ci left: 4.941220e-04	ci right 5.881009e-04	k: 518	n:960000
Cons ci ratio: 3.801868e-03	ci left: 5.244828e-01	ci right 5.264816e-01	k: 504463	n:960000
KS ci ratio: 3.312761e-01	ci left: 1.217238e-04	ci right 1.709590e-04	k: 139	n:960000
FOXK1   960000 perm   509 sec   (1885 perm/sec)   p_kst 1.447917e-04   p_cons 5.254823e-01   p_joint 5.395833e-04

Joint ci ratio: 1.711996e-01	ci left: 4.939612e-04	ci right 5.874138e-04	k: 523	n:970000
Cons ci ratio: 3.782508e-03	ci left: 5.244500e-01	ci right 5.264385e-01	k: 509681	n:970000
KS ci ratio: 3.312764e-01	ci left: 1.204689e-04	ci right 1.691965e-04	k: 139	n:970000
FOXK1   970000 perm   518 sec   (1874 perm/sec)   p_kst 1.432990e-04   p_cons 5.254443e-01   p_joint 5.391753e-04

Joint ci ratio: 1.708742e-01	ci left: 4.908741e-04	ci right 5.835480e-04	k: 525	n:980000
Cons ci ratio: 3.763525e-03	ci left: 5.244067e-01	ci right 5.263850e-01	k: 514888	n:980000
KS ci ratio: 3.300996e-01	ci left: 1.201754e-04	ci right 1.685749e-04	k: 140	n:980000
FOXK1   980000 perm   526 sec   (1861 perm/sec)   p_kst 1.428571e-04   p_cons 5.253959e-01   p_joint 5.357143e-04

Joint ci ratio: 1.747397e-01	ci left: 4.636876e-04	ci right 5.534182e-04	k: 502	n:990000
Cons ci ratio: 3.744309e-03	ci left: 5.244329e-01	ci right 5.264012e-01	k: 520163	n:990000
KS ci ratio: 3.300999e-01	ci left: 1.189614e-04	ci right 1.668721e-04	k: 140	n:990000
FOXK1   990000 perm   535 sec   (1849 perm/sec)   p_kst 1.414141e-04   p_cons 5.254172e-01   p_joint 5.070707e-04

Joint ci ratio: 1.805814e-01	ci left: 4.284726e-04	ci right 5.144638e-04	k: 470	n:1000000
Cons ci ratio: 3.725423e-03	ci left: 5.244537e-01	ci right 5.264121e-01	k: 525433	n:1000000
KS ci ratio: 3.301001e-01	ci left: 1.177718e-04	ci right 1.652034e-04	k: 140	n:1000000
FOXK1   1000000 perm   544 sec   (1837 perm/sec)   p_kst 1.400000e-04   p_cons 5.254330e-01   p_joint 4.700000e-04

Joint ci ratio: 1.796305e-01	ci left: 4.289576e-04	ci right 5.145436e-04	k: 475	n:1010000
Cons ci ratio: 3.706981e-03	ci left: 5.244523e-01	ci right 5.264010e-01	k: 530681	n:1010000
KS ci ratio: 3.277835e-01	ci left: 1.184225e-04	ci right 1.657109e-04	k: 142	n:1010000
FOXK1   1010000 perm   553 sec   (1826 perm/sec)   p_kst 1.405941e-04   p_cons 5.254267e-01   p_joint 4.702970e-04

Joint ci ratio: 1.898849e-01	ci left: 3.779970e-04	ci right 4.582178e-04	k: 425	n:1020000
Cons ci ratio: 3.689071e-03	ci left: 5.244157e-01	ci right 5.263548e-01	k: 535893	n:1020000
KS ci ratio: 3.424698e-01	ci left: 1.064860e-04	ci right 1.513359e-04	k: 130	n:1020000
FOXK1   1020000 perm   562 sec   (1814 perm/sec)   p_kst 1.274510e-04   p_cons 5.253853e-01   p_joint 4.166667e-04

Joint ci ratio: 1.947480e-01	ci left: 3.549198e-04	ci right 4.324010e-04	k: 404	n:1030000
Cons ci ratio: 3.671018e-03	ci left: 5.244341e-01	ci right 5.263638e-01	k: 541161	n:1030000
KS ci ratio: 3.398850e-01	ci left: 1.072276e-04	ci right 1.519741e-04	k: 132	n:1030000
FOXK1   1030000 perm   571 sec   (1803 perm/sec)   p_kst 1.281553e-04   p_cons 5.253990e-01   p_joint 3.922330e-04

Joint ci ratio: 1.940308e-01	ci left: 3.542513e-04	ci right 4.312681e-04	k: 407	n:1040000
Cons ci ratio: 3.653397e-03	ci left: 5.244292e-01	ci right 5.263495e-01	k: 546405	n:1040000
KS ci ratio: 3.398852e-01	ci left: 1.061965e-04	ci right 1.505128e-04	k: 132	n:1040000
FOXK1   1040000 perm   580 sec   (1792 perm/sec)   p_kst 1.269231e-04   p_cons 5.253894e-01   p_joint 3.913462e-04

Joint ci ratio: 1.937937e-01	ci left: 3.517836e-04	ci right 4.281594e-04	k: 408	n:1050000
Cons ci ratio: 3.635742e-03	ci left: 5.244634e-01	ci right 5.263746e-01	k: 551690	n:1050000
KS ci ratio: 3.398854e-01	ci left: 1.051851e-04	ci right 1.490794e-04	k: 132	n:1050000
FOXK1   1050000 perm   590 sec   (1780 perm/sec)   p_kst 1.257143e-04   p_cons 5.254190e-01   p_joint 3.885714e-04

Joint ci ratio: 1.926198e-01	ci left: 3.529537e-04	ci right 4.290650e-04	k: 413	n:1060000
Cons ci ratio: 3.618259e-03	ci left: 5.245083e-01	ci right 5.264104e-01	k: 556987	n:1060000
KS ci ratio: 3.373582e-01	ci left: 1.059192e-04	ci right 1.497196e-04	k: 134	n:1060000
FOXK1   1060000 perm   599 sec   (1769 perm/sec)   p_kst 1.264151e-04   p_cons 5.254594e-01   p_joint 3.896226e-04

Joint ci ratio: 1.926201e-01	ci left: 3.496550e-04	ci right 4.250552e-04	k: 413	n:1070000
Cons ci ratio: 3.601639e-03	ci left: 5.244673e-01	ci right 5.263606e-01	k: 562193	n:1070000
KS ci ratio: 3.361157e-01	ci left: 1.057849e-04	ci right 1.493336e-04	k: 135	n:1070000
FOXK1   1070000 perm   609 sec   (1758 perm/sec)   p_kst 1.261682e-04   p_cons 5.254140e-01   p_joint 3.859813e-04

Joint ci ratio: 1.923882e-01	ci left: 3.472988e-04	ci right 4.220900e-04	k: 414	n:1080000
Cons ci ratio: 3.585054e-03	ci left: 5.244540e-01	ci right 5.263385e-01	k: 567428	n:1080000
KS ci ratio: 3.348868e-01	ci left: 1.056533e-04	ci right 1.489546e-04	k: 136	n:1080000
FOXK1   1080000 perm   618 sec   (1747 perm/sec)   p_kst 1.259259e-04   p_cons 5.253963e-01   p_joint 3.833333e-04

Joint ci ratio: 1.712047e-01	ci left: 4.395791e-04	ci right 5.227458e-04	k: 523	n:1090000
Cons ci ratio: 3.568269e-03	ci left: 5.245006e-01	ci right 5.263764e-01	k: 572728	n:1090000
KS ci ratio: 3.312790e-01	ci left: 1.072062e-04	ci right 1.505696e-04	k: 139	n:1090000
FOXK1   1090000 perm   628 sec   (1737 perm/sec)   p_kst 1.275229e-04   p_cons 5.254385e-01   p_joint 4.798165e-04

Joint ci ratio: 1.694351e-01	ci left: 4.451567e-04	ci right 5.284193e-04	k: 534	n:1100000
Cons ci ratio: 3.552714e-03	ci left: 5.244063e-01	ci right 5.262736e-01	k: 577874	n:1100000
KS ci ratio: 3.289377e-01	ci left: 1.078991e-04	ci right 1.511691e-04	k: 141	n:1100000
FOXK1   1100000 perm   637 sec   (1726 perm/sec)   p_kst 1.281818e-04   p_cons 5.253400e-01   p_joint 4.854545e-04

Joint ci ratio: 1.697532e-01	ci left: 4.394209e-04	ci right 5.217807e-04	k: 532	n:1110000
Cons ci ratio: 3.536843e-03	ci left: 5.243867e-01	ci right 5.262456e-01	k: 583101	n:1110000
KS ci ratio: 3.266453e-01	ci left: 1.085806e-04	ci right 1.517568e-04	k: 143	n:1110000
FOXK1   1110000 perm   647 sec   (1716 perm/sec)   p_kst 1.288288e-04   p_cons 5.253162e-01   p_joint 4.792793e-04

Joint ci ratio: 1.688056e-01	ci left: 4.406277e-04	ci right 5.227058e-04	k: 538	n:1120000
Cons ci ratio: 3.520944e-03	ci left: 5.244015e-01	ci right 5.262520e-01	k: 588366	n:1120000
KS ci ratio: 3.255171e-01	ci left: 1.084309e-04	ci right 1.513675e-04	k: 144	n:1120000
FOXK1   1120000 perm   657 sec   (1706 perm/sec)   p_kst 1.285714e-04   p_cons 5.253268e-01   p_joint 4.803571e-04

Joint ci ratio: 1.680281e-01	ci left: 4.409666e-04	ci right 5.226912e-04	k: 543	n:1130000
Cons ci ratio: 3.505027e-03	ci left: 5.244487e-01	ci right 5.262910e-01	k: 593668	n:1130000
KS ci ratio: 3.244004e-01	ci left: 1.082841e-04	ci right 1.509848e-04	k: 145	n:1130000
FOXK1   1130000 perm   666 sec   (1696 perm/sec)   p_kst 1.283186e-04   p_cons 5.253699e-01   p_joint 4.805310e-04

Joint ci ratio: 1.677203e-01	ci left: 4.387791e-04	ci right 5.199342e-04	k: 545	n:1140000
Cons ci ratio: 3.489698e-03	ci left: 5.244416e-01	ci right 5.262758e-01	k: 598909	n:1140000
KS ci ratio: 3.232952e-01	ci left: 1.081401e-04	ci right 1.506087e-04	k: 146	n:1140000
FOXK1   1140000 perm   676 sec   (1686 perm/sec)   p_kst 1.280702e-04   p_cons 5.253588e-01   p_joint 4.780702e-04

Joint ci ratio: 1.668062e-01	ci left: 4.399626e-04	ci right 5.208486e-04	k: 551	n:1150000
Cons ci ratio: 3.474350e-03	ci left: 5.244660e-01	ci right 5.262922e-01	k: 604186	n:1150000
KS ci ratio: 3.200456e-01	ci left: 1.095979e-04	ci right 1.521176e-04	k: 149	n:1150000
FOXK1   1150000 perm   686 sec   (1676 perm/sec)   p_kst 1.295652e-04   p_cons 5.253791e-01   p_joint 4.791304e-04

Joint ci ratio: 1.653151e-01	ci left: 4.444324e-04	ci right 5.253371e-04	k: 561	n:1160000
Cons ci ratio: 3.459592e-03	ci left: 5.244339e-01	ci right 5.262522e-01	k: 609398	n:1160000
KS ci ratio: 3.179330e-01	ci left: 1.102392e-04	ci right 1.526680e-04	k: 151	n:1160000
FOXK1   1160000 perm   696 sec   (1666 perm/sec)   p_kst 1.301724e-04   p_cons 5.253431e-01   p_joint 4.836207e-04

Joint ci ratio: 1.645846e-01	ci left: 4.447309e-04	ci right 5.252968e-04	k: 566	n:1170000
Cons ci ratio: 3.444666e-03	ci left: 5.244537e-01	ci right 5.262642e-01	k: 614670	n:1170000
KS ci ratio: 3.148410e-01	ci left: 1.116575e-04	ci right 1.541301e-04	k: 154	n:1170000
FOXK1   1170000 perm   706 sec   (1656 perm/sec)   p_kst 1.316239e-04   p_cons 5.253590e-01   p_joint 4.837607e-04

Joint ci ratio: 1.638636e-01	ci left: 4.450252e-04	ci right 5.252564e-04	k: 571	n:1180000
Cons ci ratio: 3.429938e-03	ci left: 5.244723e-01	ci right 5.262751e-01	k: 619941	n:1180000
KS ci ratio: 3.108551e-01	ci left: 1.138350e-04	ci right 1.564790e-04	k: 158	n:1180000
FOXK1   1180000 perm   717 sec   (1647 perm/sec)   p_kst 1.338983e-04   p_cons 5.253737e-01   p_joint 4.838983e-04

Joint ci ratio: 1.662061e-01	ci left: 4.283951e-04	ci right 5.068427e-04	k: 555	n:1190000
Cons ci ratio: 3.414873e-03	ci left: 5.245670e-01	ci right 5.263622e-01	k: 625303	n:1190000
KS ci ratio: 3.108553e-01	ci left: 1.128784e-04	ci right 1.551641e-04	k: 158	n:1190000
FOXK1   1190000 perm   727 sec   (1637 perm/sec)   p_kst 1.327731e-04   p_cons 5.254647e-01   p_joint 4.663866e-04

Joint ci ratio: 1.656115e-01	ci left: 4.280200e-04	ci right 5.060906e-04	k: 559	n:1200000
Cons ci ratio: 3.400408e-03	ci left: 5.246011e-01	ci right 5.263888e-01	k: 630594	n:1200000
KS ci ratio: 3.108555e-01	ci left: 1.119377e-04	ci right 1.538710e-04	k: 158	n:1200000
FOXK1   1200000 perm   737 sec   (1628 perm/sec)   p_kst 1.316667e-04   p_cons 5.254950e-01   p_joint 4.658333e-04

Joint ci ratio: 1.650232e-01	ci left: 4.276517e-04	ci right 5.053505e-04	k: 563	n:1210000
Cons ci ratio: 3.386535e-03	ci left: 5.245743e-01	ci right 5.263546e-01	k: 635812	n:1210000
KS ci ratio: 3.079635e-01	ci left: 1.132995e-04	ci right 1.552706e-04	k: 161	n:1210000
FOXK1   1210000 perm   748 sec   (1619 perm/sec)   p_kst 1.330579e-04   p_cons 5.254645e-01   p_joint 4.652893e-04

Joint ci ratio: 1.642966e-01	ci left: 4.280758e-04	ci right 5.054754e-04	k: 568	n:1220000
Cons ci ratio: 3.372692e-03	ci left: 5.245684e-01	ci right 5.263414e-01	k: 641055	n:1220000
KS ci ratio: 3.060799e-01	ci left: 1.138839e-04	ci right 1.557631e-04	k: 163	n:1220000
FOXK1   1220000 perm   758 sec   (1610 perm/sec)   p_kst 1.336066e-04   p_cons 5.254549e-01   p_joint 4.655738e-04

Joint ci ratio: 1.659091e-01	ci left: 4.160217e-04	ci right 4.920538e-04	k: 557	n:1230000
Cons ci ratio: 3.358776e-03	ci left: 5.245984e-01	ci right 5.263641e-01	k: 646342	n:1230000
KS ci ratio: 3.024138e-01	ci left: 1.159618e-04	ci right 1.579962e-04	k: 167	n:1230000
FOXK1   1230000 perm   768 sec   (1601 perm/sec)   p_kst 1.357724e-04   p_cons 5.254813e-01   p_joint 4.528455e-04

Joint ci ratio: 1.657609e-01	ci left: 4.134396e-04	ci right 4.889256e-04	k: 558	n:1240000
Cons ci ratio: 3.345101e-03	ci left: 5.246174e-01	ci right 5.263760e-01	k: 651616	n:1240000
KS ci ratio: 3.024140e-01	ci left: 1.150267e-04	ci right 1.567221e-04	k: 167	n:1240000
FOXK1   1240000 perm   779 sec   (1592 perm/sec)   p_kst 1.346774e-04   p_cons 5.254968e-01   p_joint 4.500000e-04

Joint ci ratio: 1.653180e-01	ci left: 4.124327e-04	ci right 4.875136e-04	k: 561	n:1250000
Cons ci ratio: 3.331641e-03	ci left: 5.246290e-01	ci right 5.263805e-01	k: 656881	n:1250000
KS ci ratio: 3.015180e-01	ci left: 1.148458e-04	ci right 1.563287e-04	k: 168	n:1250000
FOXK1   1250000 perm   790 sec   (1583 perm/sec)   p_kst 1.344000e-04   p_cons 5.255048e-01   p_joint 4.488000e-04

Joint ci ratio: 1.665082e-01	ci left: 4.030737e-04	ci right 4.770320e-04	k: 553	n:1260000
Cons ci ratio: 3.318816e-03	ci left: 5.245689e-01	ci right 5.263135e-01	k: 662056	n:1260000
KS ci ratio: 3.015181e-01	ci left: 1.139344e-04	ci right 1.550881e-04	k: 168	n:1260000
FOXK1   1260000 perm   801 sec   (1574 perm/sec)   p_kst 1.333333e-04   p_cons 5.254413e-01   p_joint 4.388889e-04

Joint ci ratio: 1.659103e-01	ci left: 4.029184e-04	ci right 4.765564e-04	k: 557	n:1270000
Cons ci ratio: 3.305450e-03	ci left: 5.246138e-01	ci right 5.263515e-01	k: 667363	n:1270000
KS ci ratio: 3.006300e-01	ci left: 1.137652e-04	ci right 1.547136e-04	k: 169	n:1270000
FOXK1   1270000 perm   811 sec   (1565 perm/sec)   p_kst 1.330709e-04   p_cons 5.254827e-01   p_joint 4.385827e-04

Joint ci ratio: 1.653189e-01	ci left: 4.027661e-04	ci right 4.760877e-04	k: 561	n:1280000
Cons ci ratio: 3.292481e-03	ci left: 5.246220e-01	ci right 5.263529e-01	k: 672624	n:1280000
KS ci ratio: 3.006302e-01	ci left: 1.128764e-04	ci right 1.535049e-04	k: 169	n:1280000
FOXK1   1280000 perm   822 sec   (1556 perm/sec)   p_kst 1.320312e-04   p_cons 5.254875e-01   p_joint 4.382812e-04

Joint ci ratio: 1.650256e-01	ci left: 4.011302e-04	ci right 4.740115e-04	k: 563	n:1290000
Cons ci ratio: 3.279775e-03	ci left: 5.246130e-01	ci right 5.263372e-01	k: 677863	n:1290000
KS ci ratio: 2.997499e-01	ci left: 1.127182e-04	ci right 1.531483e-04	k: 170	n:1290000
FOXK1   1290000 perm   833 sec   (1548 perm/sec)   p_kst 1.317829e-04   p_cons 5.254752e-01   p_joint 4.364341e-04

Joint ci ratio: 1.641547e-01	ci left: 4.024699e-04	ci right 4.751706e-04	k: 569	n:1300000
Cons ci ratio: 3.267090e-03	ci left: 5.246235e-01	ci right 5.263410e-01	k: 683127	n:1300000
KS ci ratio: 2.971544e-01	ci left: 1.139861e-04	ci right 1.544502e-04	k: 173	n:1300000
FOXK1   1300000 perm   844 sec   (1540 perm/sec)   p_kst 1.330769e-04   p_cons 5.254823e-01   p_joint 4.376923e-04

Joint ci ratio: 1.653197e-01	ci left: 3.935423e-04	ci right 4.651851e-04	k: 561	n:1310000
Cons ci ratio: 3.254276e-03	ci left: 5.246758e-01	ci right 5.263867e-01	k: 688446	n:1310000
KS ci ratio: 2.963042e-01	ci left: 1.138225e-04	ci right 1.540912e-04	k: 174	n:1310000
FOXK1   1310000 perm   855 sec   (1531 perm/sec)   p_kst 1.328244e-04   p_cons 5.255313e-01   p_joint 4.282443e-04

Joint ci ratio: 1.648803e-01	ci left: 3.927397e-04	ci right 4.640275e-04	k: 564	n:1320000
Cons ci ratio: 3.242115e-03	ci left: 5.246500e-01	ci right 5.263544e-01	k: 693663	n:1320000
KS ci ratio: 2.963044e-01	ci left: 1.129602e-04	ci right 1.529239e-04	k: 174	n:1320000
FOXK1   1320000 perm   867 sec   (1523 perm/sec)   p_kst 1.318182e-04   p_cons 5.255023e-01   p_joint 4.272727e-04

Joint ci ratio: 1.638681e-01	ci left: 3.948335e-04	ci right 4.660180e-04	k: 571	n:1330000
Cons ci ratio: 3.229874e-03	ci left: 5.246577e-01	ci right 5.263557e-01	k: 698924	n:1330000
KS ci ratio: 2.929747e-01	ci left: 1.148961e-04	ci right 1.550032e-04	k: 178	n:1330000
FOXK1   1330000 perm   878 sec   (1515 perm/sec)   p_kst 1.338346e-04   p_cons 5.255068e-01   p_joint 4.293233e-04

Joint ci ratio: 1.632982e-01	ci left: 3.947499e-04	ci right 4.656475e-04	k: 575	n:1340000
Cons ci ratio: 3.217502e-03	ci left: 5.247071e-01	ci right 5.263988e-01	k: 704241	n:1340000
KS ci ratio: 2.913515e-01	ci left: 1.154219e-04	ci right 1.554481e-04	k: 180	n:1340000
FOXK1   1340000 perm   889 sec   (1507 perm/sec)   p_kst 1.343284e-04   p_cons 5.255530e-01   p_joint 4.291045e-04

Joint ci ratio: 1.628746e-01	ci left: 3.939573e-04	ci right 4.645111e-04	k: 578	n:1350000
Cons ci ratio: 3.205561e-03	ci left: 5.247106e-01	ci right 5.263960e-01	k: 709497	n:1350000
KS ci ratio: 2.913517e-01	ci left: 1.145669e-04	ci right 1.542966e-04	k: 180	n:1350000
FOXK1   1350000 perm   901 sec   (1499 perm/sec)   p_kst 1.333333e-04   p_cons 5.255533e-01   p_joint 4.281481e-04

Joint ci ratio: 1.638689e-01	ci left: 3.861238e-04	ci right 4.557384e-04	k: 571	n:1360000
Cons ci ratio: 3.193403e-03	ci left: 5.247684e-01	ci right 5.264476e-01	k: 714827	n:1360000
KS ci ratio: 2.913518e-01	ci left: 1.137245e-04	ci right 1.531621e-04	k: 180	n:1360000
FOXK1   1360000 perm   912 sec   (1491 perm/sec)   p_kst 1.323529e-04   p_cons 5.256081e-01   p_joint 4.198529e-04

Joint ci ratio: 1.653212e-01	ci left: 3.763066e-04	ci right 4.448124e-04	k: 561	n:1370000
Cons ci ratio: 3.181858e-03	ci left: 5.247510e-01	ci right 5.264241e-01	k: 720055	n:1370000
KS ci ratio: 2.897553e-01	ci left: 1.142478e-04	ci right 1.536101e-04	k: 182	n:1370000
FOXK1   1370000 perm   923 sec   (1484 perm/sec)   p_kst 1.328467e-04   p_cons 5.255876e-01   p_joint 4.094891e-04

Joint ci ratio: 1.689702e-01	ci left: 3.569155e-04	ci right 4.234715e-04	k: 537	n:1380000
Cons ci ratio: 3.170193e-03	ci left: 5.247723e-01	ci right 5.264392e-01	k: 725336	n:1380000
KS ci ratio: 2.889669e-01	ci left: 1.140920e-04	ci right 1.532740e-04	k: 183	n:1380000
FOXK1   1380000 perm   935 sec   (1476 perm/sec)   p_kst 1.326087e-04   p_cons 5.256058e-01   p_joint 3.891304e-04

Joint ci ratio: 1.681904e-01	ci left: 3.577932e-04	ci right 4.241736e-04	k: 542	n:1390000
Cons ci ratio: 3.158997e-03	ci left: 5.247392e-01	ci right 5.264002e-01	k: 730542	n:1390000
KS ci ratio: 2.881848e-01	ci left: 1.139386e-04	ci right 1.529427e-04	k: 184	n:1390000
FOXK1   1390000 perm   947 sec   (1468 perm/sec)   p_kst 1.323741e-04   p_cons 5.255698e-01   p_joint 3.899281e-04

Joint ci ratio: 1.677277e-01	ci left: 3.572903e-04	ci right 4.233767e-04	k: 545	n:1400000
Cons ci ratio: 3.147914e-03	ci left: 5.247074e-01	ci right 5.263625e-01	k: 735749	n:1400000
KS ci ratio: 2.874091e-01	ci left: 1.137874e-04	ci right 1.526160e-04	k: 185	n:1400000
FOXK1   1400000 perm   958 sec   (1461 perm/sec)   p_kst 1.321429e-04   p_cons 5.255350e-01   p_joint 3.892857e-04

Joint ci ratio: 1.749270e-01	ci left: 3.248876e-04	ci right 3.878327e-04	k: 501	n:1410000
Cons ci ratio: 3.136952e-03	ci left: 5.246754e-01	ci right 5.263245e-01	k: 740955	n:1410000
KS ci ratio: 2.866397e-01	ci left: 1.136386e-04	ci right 1.522937e-04	k: 186	n:1410000
FOXK1   1410000 perm   970 sec   (1454 perm/sec)   p_kst 1.319149e-04   p_cons 5.255000e-01   p_joint 3.553191e-04

Joint ci ratio: 1.742341e-01	ci left: 3.252935e-04	ci right 3.880414e-04	k: 505	n:1420000
Cons ci ratio: 3.125904e-03	ci left: 5.246755e-01	ci right 5.263188e-01	k: 746206	n:1420000
KS ci ratio: 2.866398e-01	ci left: 1.128383e-04	ci right 1.512212e-04	k: 186	n:1420000
FOXK1   1420000 perm   982 sec   (1446 perm/sec)   p_kst 1.309859e-04   p_cons 5.254972e-01   p_joint 3.556338e-04

Joint ci ratio: 1.388148e-01	ci left: 5.186501e-04	ci right 5.966825e-04	k: 796	n:1430000
Cons ci ratio: 3.115099e-03	ci left: 5.246553e-01	ci right 5.262929e-01	k: 751428	n:1430000
KS ci ratio: 3.200498e-01	ci left: 8.813799e-05	ci right 1.223326e-04	k: 149	n:1430000
FOXK1   1430000 perm   994 sec   (1439 perm/sec)   p_kst 1.041958e-04   p_cons 5.254741e-01   p_joint 5.566434e-04

Joint ci ratio: 1.383814e-01	ci left: 5.184002e-04	ci right 5.961314e-04	k: 801	n:1440000
Cons ci ratio: 3.103865e-03	ci left: 5.247222e-01	ci right 5.263541e-01	k: 756775	n:1440000
KS ci ratio: 3.200499e-01	ci left: 8.752591e-05	ci right 1.214831e-04	k: 149	n:1440000
FOXK1   1440000 perm   1006 sec   (1432 perm/sec)   p_kst 1.034722e-04   p_cons 5.255382e-01   p_joint 5.562500e-04

Joint ci ratio: 1.384681e-01	ci left: 5.141591e-04	ci right 5.913068e-04	k: 800	n:1450000
Cons ci ratio: 3.092812e-03	ci left: 5.247786e-01	ci right 5.264048e-01	k: 762108	n:1450000
KS ci ratio: 3.189884e-01	ci left: 8.755664e-05	ci right 1.213901e-04	k: 150	n:1450000
FOXK1   1450000 perm   1018 sec   (1425 perm/sec)   p_kst 1.034483e-04   p_cons 5.255917e-01   p_joint 5.517241e-04

Joint ci ratio: 1.407731e-01	ci left: 4.934509e-04	ci right 5.688273e-04	k: 774	n:1460000
Cons ci ratio: 3.082197e-03	ci left: 5.247821e-01	ci right 5.264027e-01	k: 767365	n:1460000
KS ci ratio: 3.158658e-01	ci left: 8.884806e-05	ci right 1.227766e-04	k: 153	n:1460000
FOXK1   1460000 perm   1030 sec   (1418 perm/sec)   p_kst 1.047945e-04   p_cons 5.255925e-01   p_joint 5.301370e-04

Joint ci ratio: 1.403212e-01	ci left: 4.933759e-04	ci right 5.684786e-04	k: 779	n:1470000
Cons ci ratio: 3.071608e-03	ci left: 5.247992e-01	ci right 5.264143e-01	k: 772642	n:1470000
KS ci ratio: 3.138344e-01	ci left: 8.949671e-05	ci right 1.234090e-04	k: 155	n:1470000
FOXK1   1470000 perm   1042 sec   (1411 perm/sec)   p_kst 1.054422e-04   p_cons 5.256068e-01   p_joint 5.299320e-04

Joint ci ratio: 1.430065e-01	ci left: 4.711417e-04	ci right 5.443495e-04	k: 750	n:1480000
Cons ci ratio: 3.061333e-03	ci left: 5.247823e-01	ci right 5.263919e-01	k: 777869	n:1480000
KS ci ratio: 3.128334e-01	ci left: 8.951455e-05	ci right 1.233038e-04	k: 156	n:1480000
FOXK1   1480000 perm   1054 sec   (1404 perm/sec)   p_kst 1.054054e-04   p_cons 5.255872e-01   p_joint 5.067568e-04

Joint ci ratio: 1.423445e-01	ci left: 4.725100e-04	ci right 5.455617e-04	k: 757	n:1490000
Cons ci ratio: 3.050571e-03	ci left: 5.248623e-01	ci right 5.264665e-01	k: 783240	n:1490000
KS ci ratio: 3.128335e-01	ci left: 8.891377e-05	ci right 1.224763e-04	k: 156	n:1490000
FOXK1   1490000 perm   1066 sec   (1397 perm/sec)   p_kst 1.046980e-04   p_cons 5.256644e-01   p_joint 5.080537e-04

Joint ci ratio: 1.418774e-01	ci left: 4.725747e-04	ci right 5.453764e-04	k: 762	n:1500000
Cons ci ratio: 3.040973e-03	ci left: 5.247685e-01	ci right 5.263674e-01	k: 788352	n:1500000
KS ci ratio: 3.098866e-01	ci left: 9.016478e-05	ci right 1.238155e-04	k: 159	n:1500000
FOXK1   1500000 perm   1079 sec   (1390 perm/sec)   p_kst 1.060000e-04   p_cons 5.255680e-01   p_joint 5.080000e-04

Joint ci ratio: 1.414148e-01	ci left: 4.726390e-04	ci right 5.451931e-04	k: 767	n:1510000
Cons ci ratio: 3.030797e-03	ci left: 5.247859e-01	ci right 5.263795e-01	k: 793630	n:1510000
KS ci ratio: 3.098867e-01	ci left: 8.956765e-05	ci right 1.229956e-04	k: 159	n:1510000
FOXK1   1510000 perm   1091 sec   (1383 perm/sec)   p_kst 1.052980e-04   p_cons 5.255828e-01   p_joint 5.079470e-04

Joint ci ratio: 1.410480e-01	ci left: 4.720681e-04	ci right 5.443309e-04	k: 771	n:1520000
Cons ci ratio: 3.020762e-03	ci left: 5.247966e-01	ci right 5.263849e-01	k: 798898	n:1520000
KS ci ratio: 3.089228e-01	ci left: 8.958521e-05	ci right 1.228952e-04	k: 160	n:1520000
FOXK1   1520000 perm   1104 sec   (1377 perm/sec)   p_kst 1.052632e-04   p_cons 5.255908e-01   p_joint 5.072368e-04

Joint ci ratio: 1.418781e-01	ci left: 4.633084e-04	ci right 5.346829e-04	k: 762	n:1530000
Cons ci ratio: 3.010917e-03	ci left: 5.247921e-01	ci right 5.263752e-01	k: 804143	n:1530000
KS ci ratio: 3.070216e-01	ci left: 9.020588e-05	ci right 1.234998e-04	k: 162	n:1530000
FOXK1   1530000 perm   1117 sec   (1370 perm/sec)   p_kst 1.058824e-04   p_cons 5.255837e-01   p_joint 4.980392e-04

Joint ci ratio: 1.413235e-01	ci left: 4.640580e-04	ci right 5.352450e-04	k: 768	n:1540000
Cons ci ratio: 3.001020e-03	ci left: 5.248123e-01	ci right 5.263902e-01	k: 809426	n:1540000
KS ci ratio: 3.051551e-01	ci left: 9.081910e-05	ci right 1.240960e-04	k: 164	n:1540000
FOXK1   1540000 perm   1130 sec   (1363 perm/sec)   p_kst 1.064935e-04   p_cons 5.256013e-01   p_joint 4.987013e-04

Joint ci ratio: 1.410487e-01	ci left: 4.629312e-04	ci right 5.337956e-04	k: 771	n:1550000
Cons ci ratio: 2.991184e-03	ci left: 5.248380e-01	ci right 5.264109e-01	k: 814718	n:1550000
KS ci ratio: 3.042346e-01	ci left: 9.082901e-05	ci right 1.239897e-04	k: 165	n:1550000
FOXK1   1550000 perm   1142 sec   (1357 perm/sec)   p_kst 1.064516e-04   p_cons 5.256245e-01   p_joint 4.974194e-04

Joint ci ratio: 1.410489e-01	ci left: 4.599636e-04	ci right 5.303739e-04	k: 771	n:1560000
Cons ci ratio: 2.981782e-03	ci left: 5.248071e-01	ci right 5.263749e-01	k: 819922	n:1560000
KS ci ratio: 3.033224e-01	ci left: 9.083895e-05	ci right 1.238847e-04	k: 166	n:1560000
FOXK1   1560000 perm   1155 sec   (1350 perm/sec)   p_kst 1.064103e-04   p_cons 5.255910e-01   p_joint 4.942308e-04

Joint ci ratio: 1.405944e-01	ci left: 4.601064e-04	ci right 5.302926e-04	k: 776	n:1570000
Cons ci ratio: 2.972316e-03	ci left: 5.248020e-01	ci right 5.263648e-01	k: 825166	n:1570000
KS ci ratio: 3.024183e-01	ci left: 9.084890e-05	ci right 1.237808e-04	k: 167	n:1570000
FOXK1   1570000 perm   1168 sec   (1344 perm/sec)   p_kst 1.063694e-04   p_cons 5.255834e-01   p_joint 4.942675e-04

Joint ci ratio: 1.398760e-01	ci left: 4.620800e-04	ci right 5.321771e-04	k: 784	n:1580000
Cons ci ratio: 2.963259e-03	ci left: 5.247432e-01	ci right 5.263010e-01	k: 830325	n:1580000
KS ci ratio: 2.988808e-01	ci left: 9.261464e-05	ci right 1.257194e-04	k: 171	n:1580000
FOXK1   1580000 perm   1181 sec   (1338 perm/sec)   p_kst 1.082278e-04   p_cons 5.255222e-01   p_joint 4.962025e-04

Joint ci ratio: 1.395210e-01	ci left: 4.616017e-04	ci right 5.314337e-04	k: 788	n:1590000
Cons ci ratio: 2.953800e-03	ci left: 5.247669e-01	ci right 5.263198e-01	k: 835614	n:1590000
KS ci ratio: 2.988809e-01	ci left: 9.203215e-05	ci right 1.249287e-04	k: 171	n:1590000
FOXK1   1590000 perm   1194 sec   (1332 perm/sec)   p_kst 1.075472e-04   p_cons 5.255434e-01   p_joint 4.955975e-04

Joint ci ratio: 1.389061e-01	ci left: 4.629393e-04	ci right 5.326394e-04	k: 795	n:1600000
Cons ci ratio: 2.944298e-03	ci left: 5.248128e-01	ci right 5.263609e-01	k: 840939	n:1600000
KS ci ratio: 2.980159e-01	ci left: 9.203516e-05	ci right 1.248195e-04	k: 172	n:1600000
FOXK1   1600000 perm   1207 sec   (1326 perm/sec)   p_kst 1.075000e-04   p_cons 5.255869e-01   p_joint 4.968750e-04

Joint ci ratio: 1.383855e-01	ci left: 4.636613e-04	ci right 5.331870e-04	k: 801	n:1610000
Cons ci ratio: 2.935366e-03	ci left: 5.247768e-01	ci right 5.263200e-01	k: 846133	n:1610000
KS ci ratio: 2.963079e-01	ci left: 9.261316e-05	ci right 1.253788e-04	k: 174	n:1610000
FOXK1   1610000 perm   1220 sec   (1320 perm/sec)   p_kst 1.080745e-04   p_cons 5.255484e-01   p_joint 4.975155e-04

Joint ci ratio: 1.380417e-01	ci left: 4.631830e-04	ci right 5.324502e-04	k: 805	n:1620000
Cons ci ratio: 2.926446e-03	ci left: 5.247529e-01	ci right 5.262914e-01	k: 851346	n:1620000
KS ci ratio: 2.963080e-01	ci left: 9.204147e-05	ci right 1.246049e-04	k: 174	n:1620000
FOXK1   1620000 perm   1233 sec   (1314 perm/sec)   p_kst 1.074074e-04   p_cons 5.255222e-01   p_joint 4.969136e-04

Joint ci ratio: 1.405052e-01	ci left: 4.437616e-04	ci right 5.114080e-04	k: 777	n:1630000
Cons ci ratio: 2.917392e-03	ci left: 5.247662e-01	ci right 5.263000e-01	k: 856619	n:1630000
KS ci ratio: 2.946292e-01	ci left: 9.261286e-05	ci right 1.251581e-04	k: 176	n:1630000
FOXK1   1630000 perm   1247 sec   (1308 perm/sec)   p_kst 1.079755e-04   p_cons 5.255331e-01   p_joint 4.766871e-04

Joint ci ratio: 1.353795e-01	ci left: 4.763795e-04	ci right 5.461357e-04	k: 837	n:1640000
Cons ci ratio: 2.908883e-03	ci left: 5.247000e-01	ci right 5.262291e-01	k: 861762	n:1640000
KS ci ratio: 2.946293e-01	ci left: 9.204815e-05	ci right 1.243950e-04	k: 176	n:1640000
FOXK1   1640000 perm   1260 sec   (1302 perm/sec)   p_kst 1.073171e-04   p_cons 5.254646e-01   p_joint 5.103659e-04

Joint ci ratio: 1.352990e-01	ci left: 4.740779e-04	ci right 5.434524e-04	k: 838	n:1650000
Cons ci ratio: 2.899994e-03	ci left: 5.247129e-01	ci right 5.262373e-01	k: 867034	n:1650000
KS ci ratio: 2.938005e-01	ci left: 9.205161e-05	ci right 1.242917e-04	k: 177	n:1650000
FOXK1   1650000 perm   1273 sec   (1296 perm/sec)   p_kst 1.072727e-04   p_cons 5.254752e-01   p_joint 5.078788e-04

Joint ci ratio: 1.357044e-01	ci left: 4.683120e-04	ci right 5.370646e-04	k: 833	n:1660000
Cons ci ratio: 2.891102e-03	ci left: 5.247400e-01	ci right 5.262599e-01	k: 872330	n:1660000
KS ci ratio: 2.938006e-01	ci left: 9.149708e-05	ci right 1.235430e-04	k: 177	n:1660000
FOXK1   1660000 perm   1287 sec   (1290 perm/sec)   p_kst 1.066265e-04   p_cons 5.255000e-01   p_joint 5.018072e-04

Joint ci ratio: 1.353801e-01	ci left: 4.678217e-04	ci right 5.363251e-04	k: 837	n:1670000
Cons ci ratio: 2.882305e-03	ci left: 5.247645e-01	ci right 5.262798e-01	k: 877622	n:1670000
KS ci ratio: 2.938007e-01	ci left: 9.094919e-05	ci right 1.228032e-04	k: 177	n:1670000
FOXK1   1670000 perm   1301 sec   (1284 perm/sec)   p_kst 1.059880e-04   p_cons 5.255222e-01   p_joint 5.011976e-04

Joint ci ratio: 1.348181e-01	ci left: 4.690629e-04	ci right 5.374401e-04	k: 844	n:1680000
Cons ci ratio: 2.873900e-03	ci left: 5.247345e-01	ci right 5.262452e-01	k: 882823	n:1680000
KS ci ratio: 2.921638e-01	ci left: 9.151083e-05	ci right 1.233499e-04	k: 179	n:1680000
FOXK1   1680000 perm   1314 sec   (1278 perm/sec)   p_kst 1.065476e-04   p_cons 5.254899e-01   p_joint 5.023810e-04

Joint ci ratio: 1.345002e-01	ci left: 4.685745e-04	ci right 5.367065e-04	k: 848	n:1690000
Cons ci ratio: 2.865690e-03	ci left: 5.246835e-01	ci right 5.261898e-01	k: 887988	n:1690000
KS ci ratio: 2.913556e-01	ci left: 9.151776e-05	ci right 1.232550e-04	k: 180	n:1690000
FOXK1   1690000 perm   1328 sec   (1273 perm/sec)   p_kst 1.065089e-04   p_cons 5.254367e-01   p_joint 5.017751e-04

Joint ci ratio: 1.339491e-01	ci left: 4.697976e-04	ci right 5.378052e-04	k: 855	n:1700000
Cons ci ratio: 2.857217e-03	ci left: 5.246914e-01	ci right 5.261932e-01	k: 893252	n:1700000
KS ci ratio: 2.905541e-01	ci left: 9.152473e-05	ci right 1.231610e-04	k: 181	n:1700000
FOXK1   1700000 perm   1342 sec   (1267 perm/sec)   p_kst 1.064706e-04   p_cons 5.254424e-01   p_joint 5.029412e-04

Joint ci ratio: 1.332502e-01	ci left: 4.721375e-04	ci right 5.400991e-04	k: 864	n:1710000
Cons ci ratio: 2.849022e-03	ci left: 5.246635e-01	ci right 5.261610e-01	k: 898455	n:1710000
KS ci ratio: 2.897591e-01	ci left: 9.153174e-05	ci right 1.230680e-04	k: 182	n:1710000
FOXK1   1710000 perm   1356 sec   (1261 perm/sec)   p_kst 1.064327e-04   p_cons 5.254123e-01   p_joint 5.052632e-04

Joint ci ratio: 1.324864e-01	ci left: 4.750133e-04	ci right 5.429660e-04	k: 874	n:1720000
Cons ci ratio: 2.840420e-03	ci left: 5.247197e-01	ci right 5.262128e-01	k: 903802	n:1720000
KS ci ratio: 2.889707e-01	ci left: 9.153878e-05	ci right 1.229759e-04	k: 183	n:1720000
FOXK1   1720000 perm   1370 sec   (1255 perm/sec)   p_kst 1.063953e-04   p_cons 5.254663e-01   p_joint 5.081395e-04

Joint ci ratio: 1.316612e-01	ci left: 4.784159e-04	ci right 5.463957e-04	k: 885	n:1730000
Cons ci ratio: 2.832398e-03	ci left: 5.246868e-01	ci right 5.261756e-01	k: 908996	n:1730000
KS ci ratio: 2.866432e-01	ci left: 9.261860e-05	ci right 1.241240e-04	k: 186	n:1730000
FOXK1   1730000 perm   1384 sec   (1250 perm/sec)   p_kst 1.075145e-04   p_cons 5.254312e-01   p_joint 5.115607e-04

Joint ci ratio: 1.312913e-01	ci left: 4.784454e-04	ci right 5.462236e-04	k: 890	n:1740000
Cons ci ratio: 2.824200e-03	ci left: 5.246974e-01	ci right 5.261819e-01	k: 914265	n:1740000
KS ci ratio: 2.858799e-01	ci left: 9.261977e-05	ci right 1.240265e-04	k: 187	n:1740000
FOXK1   1740000 perm   1399 sec   (1244 perm/sec)   p_kst 1.074713e-04   p_cons 5.254397e-01   p_joint 5.114943e-04

Joint ci ratio: 1.306330e-01	ci left: 4.806858e-04	ci right 5.484135e-04	k: 899	n:1750000
Cons ci ratio: 2.816272e-03	ci left: 5.246724e-01	ci right 5.261527e-01	k: 919472	n:1750000
KS ci ratio: 2.828860e-01	ci left: 9.421324e-05	ci right 1.257661e-04	k: 191	n:1750000
FOXK1   1750000 perm   1413 sec   (1239 perm/sec)   p_kst 1.091429e-04   p_cons 5.254126e-01   p_joint 5.137143e-04

Joint ci ratio: 1.301997e-01	ci left: 4.812526e-04	ci right 5.488177e-04	k: 905	n:1760000
Cons ci ratio: 2.808289e-03	ci left: 5.246693e-01	ci right 5.261454e-01	k: 924717	n:1760000
KS ci ratio: 2.814240e-01	ci left: 9.473390e-05	ci right 1.262680e-04	k: 193	n:1760000
FOXK1   1760000 perm   1427 sec   (1233 perm/sec)   p_kst 1.096591e-04   p_cons 5.254074e-01   p_joint 5.142045e-04

Joint ci ratio: 1.299848e-01	ci left: 4.801733e-04	ci right 5.474671e-04	k: 908	n:1770000
Cons ci ratio: 2.800373e-03	ci left: 5.246663e-01	ci right 5.261381e-01	k: 929962	n:1770000
KS ci ratio: 2.807015e-01	ci left: 9.472384e-05	ci right 1.261594e-04	k: 194	n:1770000
FOXK1   1770000 perm   1441 sec   (1228 perm/sec)   p_kst 1.096045e-04   p_cons 5.254023e-01   p_joint 5.129944e-04

Joint ci ratio: 1.294871e-01	ci left: 4.812807e-04	ci right 5.484516e-04	k: 915	n:1780000
Cons ci ratio: 2.792421e-03	ci left: 5.246818e-01	ci right 5.261495e-01	k: 935240	n:1780000
KS ci ratio: 2.792729e-01	ci left: 9.523640e-05	ci right 1.266529e-04	k: 196	n:1780000
FOXK1   1780000 perm   1456 sec   (1223 perm/sec)   p_kst 1.101124e-04   p_cons 5.254157e-01   p_joint 5.140449e-04

Joint ci ratio: 1.294166e-01	ci left: 4.791325e-04	ci right 5.459644e-04	k: 916	n:1790000
Cons ci ratio: 2.784788e-03	ci left: 5.246520e-01	ci right 5.261156e-01	k: 940437	n:1790000
KS ci ratio: 2.792730e-01	ci left: 9.470435e-05	ci right 1.259453e-04	k: 196	n:1790000
FOXK1   1790000 perm   1470 sec   (1217 perm/sec)   p_kst 1.094972e-04   p_cons 5.253838e-01   p_joint 5.117318e-04

Joint ci ratio: 1.290652e-01	ci left: 4.791587e-04	ci right 5.457988e-04	k: 921	n:1800000
Cons ci ratio: 2.776998e-03	ci left: 5.246619e-01	ci right 5.261214e-01	k: 945705	n:1800000
KS ci ratio: 2.785669e-01	ci left: 9.469492e-05	ci right 1.258399e-04	k: 197	n:1800000
FOXK1   1800000 perm   1485 sec   (1212 perm/sec)   p_kst 1.094444e-04   p_cons 5.253917e-01   p_joint 5.116667e-04

Joint ci ratio: 1.287862e-01	ci left: 4.786500e-04	ci right 5.450645e-04	k: 925	n:1810000
Cons ci ratio: 2.769350e-03	ci left: 5.246578e-01	ci right 5.261133e-01	k: 950948	n:1810000
KS ci ratio: 2.778661e-01	ci left: 9.468569e-05	ci right 1.257356e-04	k: 198	n:1810000
FOXK1   1810000 perm   1499 sec   (1207 perm/sec)   p_kst 1.093923e-04   p_cons 5.253856e-01   p_joint 5.110497e-04

Joint ci ratio: 1.286475e-01	ci left: 4.770836e-04	ci right 5.432040e-04	k: 927	n:1820000
Cons ci ratio: 2.761676e-03	ci left: 5.246698e-01	ci right 5.261213e-01	k: 956220	n:1820000
KS ci ratio: 2.771706e-01	ci left: 9.467665e-05	ci right 1.256324e-04	k: 199	n:1820000
FOXK1   1820000 perm   1514 sec   (1202 perm/sec)   p_kst 1.093407e-04   p_cons 5.253956e-01   p_joint 5.093407e-04

Joint ci ratio: 1.285092e-01	ci left: 4.755343e-04	ci right 5.413637e-04	k: 929	n:1830000
Cons ci ratio: 2.754144e-03	ci left: 5.246675e-01	ci right 5.261150e-01	k: 961466	n:1830000
KS ci ratio: 2.764802e-01	ci left: 9.466782e-05	ci right 1.255301e-04	k: 200	n:1830000
FOXK1   1830000 perm   1529 sec   (1197 perm/sec)   p_kst 1.092896e-04   p_cons 5.253913e-01   p_joint 5.076503e-04

Joint ci ratio: 1.281651e-01	ci left: 4.755800e-04	ci right 5.412261e-04	k: 934	n:1840000
Cons ci ratio: 2.746569e-03	ci left: 5.246841e-01	ci right 5.261277e-01	k: 966747	n:1840000
KS ci ratio: 2.737693e-01	ci left: 9.617729e-05	ci right 1.271714e-04	k: 204	n:1840000
FOXK1   1840000 perm   1543 sec   (1192 perm/sec)   p_kst 1.108696e-04   p_cons 5.254060e-01   p_joint 5.076087e-04

Joint ci ratio: 1.278238e-01	ci left: 4.756255e-04	ci right 5.410898e-04	k: 939	n:1850000
Cons ci ratio: 2.739159e-03	ci left: 5.246817e-01	ci right 5.261214e-01	k: 971993	n:1850000
KS ci ratio: 2.724435e-01	ci left: 9.666448e-05	ci right 1.276389e-04	k: 206	n:1850000
FOXK1   1850000 perm   1558 sec   (1187 perm/sec)   p_kst 1.113514e-04   p_cons 5.254016e-01   p_joint 5.075676e-04

Joint ci ratio: 1.272832e-01	ci left: 4.772322e-04	ci right 5.426189e-04	k: 947	n:1860000
Cons ci ratio: 2.731880e-03	ci left: 5.246665e-01	ci right 5.261023e-01	k: 977215	n:1860000
KS ci ratio: 2.717878e-01	ci left: 9.664573e-05	ci right 1.275269e-04	k: 207	n:1860000
FOXK1   1860000 perm   1573 sec   (1183 perm/sec)   p_kst 1.112903e-04   p_cons 5.253844e-01   p_joint 5.091398e-04

Joint ci ratio: 1.268823e-01	ci left: 4.777867e-04	ci right 5.430277e-04	k: 953	n:1870000
Cons ci ratio: 2.724802e-03	ci left: 5.246252e-01	ci right 5.260571e-01	k: 982388	n:1870000
KS ci ratio: 2.704904e-01	ci left: 9.712573e-05	ci right 1.279870e-04	k: 209	n:1870000
FOXK1   1870000 perm   1588 sec   (1178 perm/sec)   p_kst 1.117647e-04   p_cons 5.253412e-01   p_joint 5.096257e-04

Joint ci ratio: 1.265511e-01	ci left: 4.778206e-04	ci right 5.428831e-04	k: 958	n:1880000
Cons ci ratio: 2.717492e-03	ci left: 5.246370e-01	ci right 5.260651e-01	k: 987660	n:1880000
KS ci ratio: 2.704905e-01	ci left: 9.660910e-05	ci right 1.273062e-04	k: 209	n:1880000
FOXK1   1880000 perm   1603 sec   (1173 perm/sec)   p_kst 1.111702e-04   p_cons 5.253511e-01   p_joint 5.095745e-04

Joint ci ratio: 1.281660e-01	ci left: 4.629983e-04	ci right 5.269082e-04	k: 934	n:1890000
Cons ci ratio: 2.710326e-03	ci left: 5.246328e-01	ci right 5.260571e-01	k: 992902	n:1890000
KS ci ratio: 2.698488e-01	ci left: 9.659121e-05	ci right 1.271975e-04	k: 210	n:1890000
FOXK1   1890000 perm   1618 sec   (1168 perm/sec)   p_kst 1.111111e-04   p_cons 5.253450e-01   p_joint 4.941799e-04

Joint ci ratio: 1.277567e-01	ci left: 4.636183e-04	ci right 5.273939e-04	k: 940	n:1900000
Cons ci ratio: 2.703174e-03	ci left: 5.246365e-01	ci right 5.260571e-01	k: 998159	n:1900000
KS ci ratio: 2.692116e-01	ci left: 9.657359e-05	ci right 1.270898e-04	k: 211	n:1900000
FOXK1   1900000 perm   1633 sec   (1164 perm/sec)   p_kst 1.110526e-04   p_cons 5.253468e-01   p_joint 4.947368e-04

Joint ci ratio: 1.275536e-01	ci left: 4.627115e-04	ci right 5.262535e-04	k: 943	n:1910000
Cons ci ratio: 2.695875e-03	ci left: 5.246779e-01	ci right 5.260948e-01	k: 1003488	n:1910000
KS ci ratio: 2.692117e-01	ci left: 9.606796e-05	ci right 1.264244e-04	k: 211	n:1910000
FOXK1   1910000 perm   1648 sec   (1159 perm/sec)   p_kst 1.104712e-04   p_cons 5.253864e-01   p_joint 4.937173e-04

Joint ci ratio: 1.273514e-01	ci left: 4.618142e-04	ci right 5.251249e-04	k: 946	n:1920000
Cons ci ratio: 2.688879e-03	ci left: 5.246736e-01	ci right 5.260868e-01	k: 1008730	n:1920000
KS ci ratio: 2.679507e-01	ci left: 9.653914e-05	ci right 1.268776e-04	k: 213	n:1920000
FOXK1   1920000 perm   1664 sec   (1154 perm/sec)   p_kst 1.109375e-04   p_cons 5.253802e-01   p_joint 4.927083e-04

Joint ci ratio: 1.272844e-01	ci left: 4.599230e-04	ci right 5.229387e-04	k: 947	n:1930000
Cons ci ratio: 2.682059e-03	ci left: 5.246465e-01	ci right 5.260560e-01	k: 1013928	n:1930000
KS ci ratio: 2.679508e-01	ci left: 9.603894e-05	ci right 1.262202e-04	k: 213	n:1930000
FOXK1   1930000 perm   1679 sec   (1149 perm/sec)   p_kst 1.103627e-04   p_cons 5.253513e-01   p_joint 4.906736e-04

Joint ci ratio: 1.268834e-01	ci left: 4.605467e-04	ci right 5.234342e-04	k: 953	n:1940000
Cons ci ratio: 2.675020e-03	ci left: 5.246702e-01	ci right 5.260761e-01	k: 1019224	n:1940000
KS ci ratio: 2.667073e-01	ci left: 9.650574e-05	ci right 1.266694e-04	k: 215	n:1940000
FOXK1   1940000 perm   1694 sec   (1145 perm/sec)   p_kst 1.108247e-04   p_cons 5.253732e-01   p_joint 4.912371e-04

Joint ci ratio: 1.266183e-01	ci left: 4.601712e-04	ci right 5.228662e-04	k: 957	n:1950000
Cons ci ratio: 2.668121e-03	ci left: 5.246778e-01	ci right 5.260801e-01	k: 1024489	n:1950000
KS ci ratio: 2.660921e-01	ci left: 9.648941e-05	ci right 1.265668e-04	k: 216	n:1950000
FOXK1   1950000 perm   1710 sec   (1140 perm/sec)   p_kst 1.107692e-04   p_cons 5.253790e-01   p_joint 4.907692e-04

Joint ci ratio: 1.262236e-01	ci left: 4.607878e-04	ci right 5.233565e-04	k: 963	n:1960000
Cons ci ratio: 2.661314e-03	ci left: 5.246782e-01	ci right 5.260769e-01	k: 1029740	n:1960000
KS ci ratio: 2.654811e-01	ci left: 9.647333e-05	ci right 1.264652e-04	k: 217	n:1960000
FOXK1   1960000 perm   1726 sec   (1136 perm/sec)   p_kst 1.107143e-04   p_cons 5.253776e-01   p_joint 4.913265e-04

Joint ci ratio: 1.272850e-01	ci left: 4.505843e-04	ci right 5.123208e-04	k: 947	n:1970000
Cons ci ratio: 2.654358e-03	ci left: 5.247161e-01	ci right 5.261112e-01	k: 1035065	n:1970000
KS ci ratio: 2.654811e-01	ci left: 9.598361e-05	ci right 1.258232e-04	k: 217	n:1970000
FOXK1   1970000 perm   1742 sec   (1131 perm/sec)   p_kst 1.101523e-04   p_cons 5.254137e-01   p_joint 4.807107e-04

Joint ci ratio: 1.269507e-01	ci left: 4.507536e-04	ci right 5.123389e-04	k: 952	n:1980000
Cons ci ratio: 2.647468e-03	ci left: 5.247516e-01	ci right 5.261432e-01	k: 1040386	n:1980000
KS ci ratio: 2.642716e-01	ci left: 9.644189e-05	ci right 1.262648e-04	k: 219	n:1980000
FOXK1   1980000 perm   1757 sec   (1127 perm/sec)   p_kst 1.106061e-04   p_cons 5.254475e-01   p_joint 4.808081e-04

Joint ci ratio: 1.266851e-01	ci left: 4.504348e-04	ci right 5.118381e-04	k: 956	n:1990000
Cons ci ratio: 2.640883e-03	ci left: 5.247391e-01	ci right 5.261272e-01	k: 1045612	n:1990000
KS ci ratio: 2.630784e-01	ci left: 9.689586e-05	ci right 1.267016e-04	k: 221	n:1990000
FOXK1   1990000 perm   1773 sec   (1122 perm/sec)   p_kst 1.110553e-04   p_cons 5.254332e-01   p_joint 4.804020e-04

Joint ci ratio: 1.262242e-01	ci left: 4.515719e-04	ci right 5.128895e-04	k: 963	n:2000000
Cons ci ratio: 2.634218e-03	ci left: 5.247512e-01	ci right 5.261358e-01	k: 1050887	n:2000000
KS ci ratio: 2.619013e-01	ci left: 9.734559e-05	ci right 1.271337e-04	k: 223	n:2000000
FOXK1   2000000 perm   1789 sec   (1118 perm/sec)   p_kst 1.115000e-04   p_cons 5.254435e-01   p_joint 4.815000e-04

Joint ci ratio: 1.257684e-01	ci left: 4.526981e-04	ci right 5.139301e-04	k: 970	n:2010000
Cons ci ratio: 2.627834e-03	ci left: 5.247193e-01	ci right 5.261005e-01	k: 1056074	n:2010000
KS ci ratio: 2.619014e-01	ci left: 9.686128e-05	ci right 1.265012e-04	k: 223	n:2010000
FOXK1   2010000 perm   1805 sec   (1114 perm/sec)   p_kst 1.109453e-04   p_cons 5.254100e-01   p_joint 4.825871e-04

Joint ci ratio: 1.257038e-01	ci left: 4.509365e-04	ci right 5.118966e-04	k: 971	n:2020000
Cons ci ratio: 2.621519e-03	ci left: 5.246834e-01	ci right 5.260611e-01	k: 1061252	n:2020000
KS ci ratio: 2.613187e-01	ci left: 9.684436e-05	ci right 1.264024e-04	k: 224	n:2020000
FOXK1   2020000 perm   1822 sec   (1109 perm/sec)   p_kst 1.108911e-04   p_cons 5.253723e-01   p_joint 4.806931e-04

Joint ci ratio: 1.254459e-01	ci left: 4.506237e-04	ci right 5.114072e-04	k: 975	n:2030000
Cons ci ratio: 2.615116e-03	ci left: 5.246734e-01	ci right 5.260477e-01	k: 1066482	n:2030000
KS ci ratio: 2.613188e-01	ci left: 9.636729e-05	ci right 1.257797e-04	k: 224	n:2030000
FOXK1   2030000 perm   1838 sec   (1105 perm/sec)   p_kst 1.103448e-04   p_cons 5.253606e-01   p_joint 4.802956e-04

Joint ci ratio: 1.263560e-01	ci left: 4.417680e-04	ci right 5.018217e-04	k: 961	n:2040000
Cons ci ratio: 2.608495e-03	ci left: 5.247140e-01	ci right 5.260850e-01	k: 1071815	n:2040000
KS ci ratio: 2.607400e-01	ci left: 9.635302e-05	ci right 1.256854e-04	k: 225	n:2040000
FOXK1   2040000 perm   1854 sec   (1100 perm/sec)   p_kst 1.102941e-04   p_cons 5.253995e-01   p_joint 4.710784e-04

Joint ci ratio: 1.263562e-01	ci left: 4.396130e-04	ci right 4.993738e-04	k: 961	n:2050000
Cons ci ratio: 2.601903e-03	ci left: 5.247581e-01	ci right 5.261257e-01	k: 1077156	n:2050000
KS ci ratio: 2.607401e-01	ci left: 9.588300e-05	ci right 1.250723e-04	k: 225	n:2050000
FOXK1   2050000 perm   1871 sec   (1096 perm/sec)   p_kst 1.097561e-04   p_cons 5.254420e-01   p_joint 4.687805e-04

Joint ci ratio: 1.256397e-01	ci left: 4.426505e-04	ci right 5.024577e-04	k: 972	n:2060000
Cons ci ratio: 2.595442e-03	ci left: 5.247863e-01	ci right 5.261506e-01	k: 1082465	n:2060000
KS ci ratio: 2.590264e-01	ci left: 9.677901e-05	ci right 1.260161e-04	k: 228	n:2060000
FOXK1   2060000 perm   1887 sec   (1092 perm/sec)   p_kst 1.106796e-04   p_cons 5.254684e-01   p_joint 4.718447e-04

Joint ci ratio: 1.253181e-01	ci left: 4.428518e-04	ci right 5.025216e-04	k: 977	n:2070000
Cons ci ratio: 2.589240e-03	ci left: 5.247736e-01	ci right 5.261346e-01	k: 1087690	n:2070000
KS ci ratio: 2.590265e-01	ci left: 9.631148e-05	ci right 1.254073e-04	k: 228	n:2070000
FOXK1   2070000 perm   1904 sec   (1087 perm/sec)   p_kst 1.101449e-04   p_cons 5.254541e-01   p_joint 4.719807e-04

Joint ci ratio: 1.250627e-01	ci left: 4.425855e-04	ci right 5.020889e-04	k: 981	n:2080000
Cons ci ratio: 2.582895e-03	ci left: 5.247971e-01	ci right 5.261548e-01	k: 1092990	n:2080000
KS ci ratio: 2.590266e-01	ci left: 9.584844e-05	ci right 1.248044e-04	k: 228	n:2080000
FOXK1   2080000 perm   1920 sec   (1083 perm/sec)   p_kst 1.096154e-04   p_cons 5.254760e-01   p_joint 4.716346e-04

Joint ci ratio: 1.261601e-01	ci left: 4.325893e-04	ci right 4.912973e-04	k: 964	n:2090000
Cons ci ratio: 2.576886e-03	ci left: 5.247644e-01	ci right 5.261188e-01	k: 1098173	n:2090000
KS ci ratio: 2.584629e-01	ci left: 9.583727e-05	ci right 1.247167e-04	k: 229	n:2090000
FOXK1   2090000 perm   1937 sec   (1079 perm/sec)   p_kst 1.095694e-04   p_cons 5.254416e-01   p_joint 4.612440e-04

Joint ci ratio: 1.260949e-01	ci left: 4.309905e-04	ci right 4.894490e-04	k: 965	n:2100000
Cons ci ratio: 2.570631e-03	ci left: 5.247877e-01	ci right 5.261389e-01	k: 1103473	n:2100000
KS ci ratio: 2.567934e-01	ci left: 9.671724e-05	ci right 1.256434e-04	k: 232	n:2100000
FOXK1   2100000 perm   1953 sec   (1075 perm/sec)   p_kst 1.104762e-04   p_cons 5.254633e-01   p_joint 4.595238e-04

Joint ci ratio: 1.257051e-01	ci left: 4.317020e-04	ci right 4.900624e-04	k: 971	n:2110000
Cons ci ratio: 2.564439e-03	ci left: 5.248075e-01	ci right 5.261555e-01	k: 1108766	n:2110000
KS ci ratio: 2.567935e-01	ci left: 9.625886e-05	ci right 1.250479e-04	k: 232	n:2110000
FOXK1   2110000 perm   1970 sec   (1071 perm/sec)   p_kst 1.099526e-04   p_cons 5.254815e-01   p_joint 4.601896e-04

Joint ci ratio: 1.253188e-01	ci left: 4.324070e-04	ci right 4.906698e-04	k: 977	n:2120000
Cons ci ratio: 2.558383e-03	ci left: 5.248092e-01	ci right 5.261540e-01	k: 1114021	n:2120000
KS ci ratio: 2.556984e-01	ci left: 9.668762e-05	ci right 1.254619e-04	k: 234	n:2120000
FOXK1   2120000 perm   1986 sec   (1067 perm/sec)   p_kst 1.103774e-04   p_cons 5.254816e-01   p_joint 4.608491e-04

Joint ci ratio: 1.244939e-01	ci left: 4.362896e-04	ci right 4.946600e-04	k: 990	n:2130000
Cons ci ratio: 2.552538e-03	ci left: 5.247780e-01	ci right 5.261196e-01	k: 1119206	n:2130000
KS ci ratio: 2.530206e-01	ci left: 9.843149e-05	ci right 1.273696e-04	k: 239	n:2130000
FOXK1   2130000 perm   2003 sec   (1063 perm/sec)   p_kst 1.122066e-04   p_cons 5.254488e-01   p_joint 4.647887e-04

Joint ci ratio: 1.244940e-01	ci left: 4.342508e-04	ci right 4.923486e-04	k: 990	n:2140000
Cons ci ratio: 2.546640e-03	ci left: 5.247653e-01	ci right 5.261038e-01	k: 1124430	n:2140000
KS ci ratio: 2.530207e-01	ci left: 9.797152e-05	ci right 1.267745e-04	k: 239	n:2140000
FOXK1   2140000 perm   2020 sec   (1059 perm/sec)   p_kst 1.116822e-04   p_cons 5.254346e-01   p_joint 4.626168e-04

Joint ci ratio: 1.243687e-01	ci left: 4.331323e-04	ci right 4.910178e-04	k: 992	n:2150000
Cons ci ratio: 2.540662e-03	ci left: 5.247764e-01	ci right 5.261119e-01	k: 1129705	n:2150000
KS ci ratio: 2.519729e-01	ci left: 9.838722e-05	ci right 1.271738e-04	k: 241	n:2150000
FOXK1   2150000 perm   2037 sec   (1055 perm/sec)   p_kst 1.120930e-04   p_cons 5.254442e-01   p_joint 4.613953e-04

Joint ci ratio: 1.286526e-01	ci left: 4.019861e-04	ci right 4.577009e-04	k: 927	n:2160000
Cons ci ratio: 2.534789e-03	ci left: 5.247750e-01	ci right 5.261073e-01	k: 1134953	n:2160000
KS ci ratio: 2.514539e-01	ci left: 9.836548e-05	ci right 1.270771e-04	k: 242	n:2160000
FOXK1   2160000 perm   2054 sec   (1052 perm/sec)   p_kst 1.120370e-04   p_cons 5.254412e-01   p_joint 4.291667e-04

Joint ci ratio: 1.458630e-01	ci left: 3.084486e-04	ci right 3.574172e-04	k: 721	n:2170000
Cons ci ratio: 2.528950e-03	ci left: 5.247750e-01	ci right 5.261042e-01	k: 1140204	n:2170000
KS ci ratio: 2.008100e-01	ci left: 1.579502e-04	ci right 1.936365e-04	k: 380	n:2170000
FOXK1   2170000 perm   2072 sec   (1047 perm/sec)   p_kst 1.751152e-04   p_cons 5.254396e-01   p_joint 3.322581e-04

Joint ci ratio: 1.474028e-01	ci left: 3.004053e-04	ci right 3.486448e-04	k: 706	n:2180000
Cons ci ratio: 2.522886e-03	ci left: 5.248272e-01	ci right 5.261534e-01	k: 1145569	n:2180000
KS ci ratio: 2.008101e-01	ci left: 1.572256e-04	ci right 1.927483e-04	k: 380	n:2180000
FOXK1   2180000 perm   2089 sec   (1043 perm/sec)   p_kst 1.743119e-04   p_cons 5.254904e-01   p_joint 3.238532e-04

Joint ci ratio: 1.468843e-01	ci left: 3.012326e-04	ci right 3.494199e-04	k: 711	n:2190000
Cons ci ratio: 2.517209e-03	ci left: 5.248110e-01	ci right 5.261341e-01	k: 1150785	n:2190000
KS ci ratio: 2.002851e-01	ci left: 1.573751e-04	ci right 1.928272e-04	k: 382	n:2190000
FOXK1   2190000 perm   2107 sec   (1040 perm/sec)   p_kst 1.744292e-04   p_cons 5.254726e-01   p_joint 3.246575e-04

Joint ci ratio: 1.467813e-01	ci left: 3.003012e-04	ci right 3.483028e-04	k: 712	n:2200000
Cons ci ratio: 2.511431e-03	ci left: 5.248226e-01	ci right 5.261428e-01	k: 1156062	n:2200000
KS ci ratio: 1.997642e-01	ci left: 1.575233e-04	ci right 1.929053e-04	k: 384	n:2200000
FOXK1   2200000 perm   2124 sec   (1036 perm/sec)   p_kst 1.745455e-04   p_cons 5.254827e-01   p_joint 3.236364e-04

Joint ci ratio: 1.467814e-01	ci left: 2.989424e-04	ci right 3.467268e-04	k: 712	n:2210000
Cons ci ratio: 2.505644e-03	ci left: 5.248437e-01	ci right 5.261608e-01	k: 1161360	n:2210000
KS ci ratio: 1.995053e-01	ci left: 1.572404e-04	ci right 1.925075e-04	k: 385	n:2210000
FOXK1   2210000 perm   2141 sec   (1032 perm/sec)   p_kst 1.742081e-04   p_cons 5.255023e-01   p_joint 3.221719e-04

Joint ci ratio: 1.485639e-01	ci left: 2.902210e-04	ci right 3.372247e-04	k: 695	n:2220000
Cons ci ratio: 2.500017e-03	ci left: 5.248406e-01	ci right 5.261548e-01	k: 1166605	n:2220000
KS ci ratio: 1.995054e-01	ci left: 1.565321e-04	ci right 1.916403e-04	k: 385	n:2220000
FOXK1   2220000 perm   2158 sec   (1029 perm/sec)   p_kst 1.734234e-04   p_cons 5.254977e-01   p_joint 3.130631e-04

Joint ci ratio: 1.484573e-01	ci left: 2.893513e-04	ci right 3.361776e-04	k: 696	n:2230000
Cons ci ratio: 2.494435e-03	ci left: 5.248363e-01	ci right 5.261475e-01	k: 1171847	n:2230000
KS ci ratio: 1.995054e-01	ci left: 1.558302e-04	ci right 1.907810e-04	k: 385	n:2230000
FOXK1   2230000 perm   2176 sec   (1025 perm/sec)   p_kst 1.726457e-04   p_cons 5.254919e-01   p_joint 3.121076e-04

Joint ci ratio: 1.481389e-01	ci left: 2.893491e-04	ci right 3.360658e-04	k: 699	n:2240000
Cons ci ratio: 2.489048e-03	ci left: 5.248003e-01	ci right 5.261086e-01	k: 1177018	n:2240000
KS ci ratio: 1.989906e-01	ci left: 1.559828e-04	ci right 1.908666e-04	k: 387	n:2240000
FOXK1   2240000 perm   2194 sec   (1021 perm/sec)   p_kst 1.727679e-04   p_cons 5.254545e-01   p_joint 3.120536e-04

Joint ci ratio: 1.477174e-01	ci left: 2.897751e-04	ci right 3.364157e-04	k: 703	n:2250000
Cons ci ratio: 2.483595e-03	ci left: 5.247846e-01	ci right 5.260900e-01	k: 1182234	n:2250000
KS ci ratio: 1.987347e-01	ci left: 1.557119e-04	ci right 1.904849e-04	k: 388	n:2250000
FOXK1   2250000 perm   2211 sec   (1017 perm/sec)   p_kst 1.724444e-04   p_cons 5.254373e-01   p_joint 3.124444e-04

Joint ci ratio: 1.474037e-01	ci left: 2.897714e-04	ci right 3.363035e-04	k: 706	n:2260000
Cons ci ratio: 2.478065e-03	ci left: 5.247921e-01	ci right 5.260946e-01	k: 1187502	n:2260000
KS ci ratio: 1.984797e-01	ci left: 1.554434e-04	ci right 1.901065e-04	k: 389	n:2260000
FOXK1   2260000 perm   2229 sec   (1014 perm/sec)   p_kst 1.721239e-04   p_cons 5.254434e-01   p_joint 3.123894e-04

Joint ci ratio: 1.497529e-01	ci left: 2.791633e-04	ci right 3.247705e-04	k: 684	n:2270000
Cons ci ratio: 2.472562e-03	ci left: 5.248013e-01	ci right 5.261009e-01	k: 1192774	n:2270000
KS ci ratio: 1.982258e-01	ci left: 1.551772e-04	ci right 1.897314e-04	k: 390	n:2270000
FOXK1   2270000 perm   2247 sec   (1010 perm/sec)   p_kst 1.718062e-04   p_cons 5.254511e-01   p_joint 3.013216e-04

Joint ci ratio: 1.495348e-01	ci left: 2.787833e-04	ci right 3.242561e-04	k: 686	n:2280000
Cons ci ratio: 2.467115e-03	ci left: 5.248064e-01	ci right 5.261032e-01	k: 1198037	n:2280000
KS ci ratio: 1.977208e-01	ci left: 1.553304e-04	ci right 1.898198e-04	k: 392	n:2280000
FOXK1   2280000 perm   2265 sec   (1007 perm/sec)   p_kst 1.719298e-04   p_cons 5.254548e-01   p_joint 3.008772e-04

Joint ci ratio: 1.489935e-01	ci left: 2.796678e-04	ci right 3.251050e-04	k: 691	n:2290000
Cons ci ratio: 2.461698e-03	ci left: 5.248128e-01	ci right 5.261068e-01	k: 1203303	n:2290000
KS ci ratio: 1.969703e-01	ci left: 1.558974e-04	ci right 1.903656e-04	k: 395	n:2290000
FOXK1   2290000 perm   2283 sec   (1003 perm/sec)   p_kst 1.724891e-04   p_cons 5.254598e-01   p_joint 3.017467e-04

Joint ci ratio: 1.488860e-01	ci left: 2.788704e-04	ci right 3.241425e-04	k: 692	n:2300000
Cons ci ratio: 2.456280e-03	ci left: 5.248266e-01	ci right 5.261177e-01	k: 1208586	n:2300000
KS ci ratio: 1.969704e-01	ci left: 1.552196e-04	ci right 1.895379e-04	k: 395	n:2300000
FOXK1   2300000 perm   2301 sec   (1000 perm/sec)   p_kst 1.717391e-04   p_cons 5.254722e-01   p_joint 3.008696e-04

Joint ci ratio: 1.484582e-01	ci left: 2.793304e-04	ci right 3.245352e-04	k: 696	n:2310000
Cons ci ratio: 2.450617e-03	ci left: 5.248974e-01	ci right 5.261857e-01	k: 1214001	n:2310000
KS ci ratio: 1.962285e-01	ci left: 1.557824e-04	ci right 1.900800e-04	k: 398	n:2310000
FOXK1   2310000 perm   2319 sec   (996 perm/sec)   p_kst 1.722944e-04   p_cons 5.255416e-01   p_joint 3.012987e-04

Joint ci ratio: 1.493179e-01	ci left: 2.748065e-04	ci right 3.195598e-04	k: 688	n:2320000
Cons ci ratio: 2.445510e-03	ci left: 5.248619e-01	ci right 5.261475e-01	k: 1219171	n:2320000
KS ci ratio: 1.954948e-01	ci left: 1.563406e-04	ci right 1.906171e-04	k: 401	n:2320000
FOXK1   2320000 perm   2337 sec   (993 perm/sec)   p_kst 1.728448e-04   p_cons 5.255047e-01   p_joint 2.965517e-04

Joint ci ratio: 1.491017e-01	ci left: 2.744534e-04	ci right 3.190787e-04	k: 690	n:2330000
Cons ci ratio: 2.440278e-03	ci left: 5.248590e-01	ci right 5.261418e-01	k: 1224416	n:2330000
KS ci ratio: 1.952522e-01	ci left: 1.560778e-04	ci right 1.902491e-04	k: 402	n:2330000
FOXK1   2330000 perm   2355 sec   (989 perm/sec)   p_kst 1.725322e-04   p_cons 5.255004e-01   p_joint 2.961373e-04

Joint ci ratio: 1.486720e-01	ci left: 2.749262e-04	ci right 3.194881e-04	k: 694	n:2340000
Cons ci ratio: 2.435095e-03	ci left: 5.248527e-01	ci right 5.261327e-01	k: 1229653	n:2340000
KS ci ratio: 1.945294e-01	ci left: 1.566303e-04	ci right 1.907806e-04	k: 405	n:2340000
FOXK1   2340000 perm   2373 sec   (986 perm/sec)   p_kst 1.730769e-04   p_cons 5.254927e-01   p_joint 2.965812e-04

Joint ci ratio: 1.484585e-01	ci left: 2.745757e-04	ci right 3.190113e-04	k: 696	n:2350000
Cons ci ratio: 2.429875e-03	ci left: 5.248609e-01	ci right 5.261382e-01	k: 1234924	n:2350000
KS ci ratio: 1.945295e-01	ci left: 1.559638e-04	ci right 1.899688e-04	k: 405	n:2350000
FOXK1   2350000 perm   2391 sec   (983 perm/sec)   p_kst 1.723404e-04   p_cons 5.254996e-01   p_joint 2.961702e-04

Joint ci ratio: 1.480343e-01	ci left: 2.750443e-04	ci right 3.194173e-04	k: 700	n:2360000
Cons ci ratio: 2.424685e-03	ci left: 5.248699e-01	ci right 5.261445e-01	k: 1240197	n:2360000
KS ci ratio: 1.935781e-01	ci left: 1.569155e-04	ci right 1.909410e-04	k: 409	n:2360000
FOXK1   2360000 perm   2409 sec   (980 perm/sec)   p_kst 1.733051e-04   p_cons 5.255072e-01   p_joint 2.966102e-04

Joint ci ratio: 1.479289e-01	ci left: 2.742901e-04	ci right 3.185071e-04	k: 701	n:2370000
Cons ci ratio: 2.419757e-03	ci left: 5.248315e-01	ci right 5.261034e-01	k: 1245358	n:2370000
KS ci ratio: 1.935782e-01	ci left: 1.562534e-04	ci right 1.901354e-04	k: 409	n:2370000
FOXK1   2370000 perm   2427 sec   (976 perm/sec)   p_kst 1.725738e-04   p_cons 5.254675e-01   p_joint 2.957806e-04

Joint ci ratio: 1.477187e-01	ci left: 2.739469e-04	ci right 3.180402e-04	k: 703	n:2380000
Cons ci ratio: 2.414602e-03	ci left: 5.248464e-01	ci right 5.261157e-01	k: 1250645	n:2380000
KS ci ratio: 1.933426e-01	ci left: 1.559967e-04	ci right 1.897770e-04	k: 410	n:2380000
FOXK1   2380000 perm   2446 sec   (973 perm/sec)   p_kst 1.722689e-04   p_cons 5.254811e-01   p_joint 2.953782e-04

Joint ci ratio: 1.474049e-01	ci left: 2.740096e-04	ci right 3.180110e-04	k: 706	n:2390000
Cons ci ratio: 2.409407e-03	ci left: 5.248763e-01	ci right 5.261429e-01	k: 1255968	n:2390000
KS ci ratio: 1.928739e-01	ci left: 1.561404e-04	ci right 1.898601e-04	k: 412	n:2390000
FOXK1   2390000 perm   2465 sec   (970 perm/sec)   p_kst 1.723849e-04   p_cons 5.255096e-01   p_joint 2.953975e-04

Joint ci ratio: 1.469897e-01	ci left: 2.744731e-04	ci right 3.184140e-04	k: 710	n:2400000
Cons ci ratio: 2.404349e-03	ci left: 5.248847e-01	ci right 5.261486e-01	k: 1261240	n:2400000
KS ci ratio: 1.921771e-01	ci left: 1.566795e-04	ci right 1.903792e-04	k: 415	n:2400000
FOXK1   2400000 perm   2483 sec   (966 perm/sec)   p_kst 1.729167e-04   p_cons 5.255167e-01   p_joint 2.958333e-04

Joint ci ratio: 1.513088e-01	ci left: 2.573558e-04	ci right 2.998767e-04	k: 670	n:2410000
Cons ci ratio: 2.399533e-03	ci left: 5.248490e-01	ci right 5.261103e-01	k: 1266406	n:2410000
KS ci ratio: 1.917168e-01	ci left: 1.568194e-04	ci right 1.904590e-04	k: 417	n:2410000
FOXK1   2410000 perm   2502 sec   (963 perm/sec)   p_kst 1.730290e-04   p_cons 5.254797e-01   p_joint 2.780083e-04

Joint ci ratio: 1.508598e-01	ci left: 2.578828e-04	ci right 3.003528e-04	k: 674	n:2420000
Cons ci ratio: 2.394844e-03	ci left: 5.247933e-01	ci right 5.260520e-01	k: 1271523	n:2420000
KS ci ratio: 1.914879e-01	ci left: 1.565648e-04	ci right 1.901050e-04	k: 418	n:2420000
FOXK1   2420000 perm   2521 sec   (960 perm/sec)   p_kst 1.727273e-04   p_cons 5.254227e-01   p_joint 2.785124e-04

Joint ci ratio: 1.507482e-01	ci left: 2.572175e-04	ci right 2.995439e-04	k: 675	n:2430000
Cons ci ratio: 2.390004e-03	ci left: 5.247752e-01	ci right 5.260313e-01	k: 1276730	n:2430000
KS ci ratio: 1.912598e-01	ci left: 1.563123e-04	ci right 1.897539e-04	k: 419	n:2430000
FOXK1   2430000 perm   2540 sec   (957 perm/sec)   p_kst 1.724280e-04   p_cons 5.254033e-01   p_joint 2.777778e-04

Joint ci ratio: 1.501937e-01	ci left: 2.581354e-04	ci right 3.004425e-04	k: 680	n:2440000
Cons ci ratio: 2.385041e-03	ci left: 5.247892e-01	ci right 5.260427e-01	k: 1282015	n:2440000
KS ci ratio: 1.910326e-01	ci left: 1.560619e-04	ci right 1.894056e-04	k: 420	n:2440000
FOXK1   2440000 perm   2559 sec   (954 perm/sec)   p_kst 1.721311e-04   p_cons 5.254160e-01   p_joint 2.786885e-04

Joint ci ratio: 1.500836e-01	ci left: 2.574746e-04	ci right 2.996397e-04	k: 681	n:2450000
Cons ci ratio: 2.380067e-03	ci left: 5.248116e-01	ci right 5.260626e-01	k: 1287321	n:2450000
KS ci ratio: 1.908061e-01	ci left: 1.558136e-04	ci right 1.890602e-04	k: 421	n:2450000
FOXK1   2450000 perm   2578 sec   (950 perm/sec)   p_kst 1.718367e-04   p_cons 5.254371e-01   p_joint 2.779592e-04

Joint ci ratio: 1.387440e-01	ci left: 3.018817e-04	ci right 3.472755e-04	k: 797	n:2460000
Cons ci ratio: 2.375379e-03	ci left: 5.247806e-01	ci right 5.260291e-01	k: 1292496	n:2460000
KS ci ratio: 1.899081e-01	ci left: 1.567287e-04	ci right 1.899951e-04	k: 425	n:2460000
FOXK1   2460000 perm   2597 sec   (947 perm/sec)   p_kst 1.727642e-04   p_cons 5.254049e-01   p_joint 3.239837e-04

Joint ci ratio: 1.382252e-01	ci left: 3.030046e-04	ci right 3.483828e-04	k: 803	n:2470000
Cons ci ratio: 2.370716e-03	ci left: 5.247503e-01	ci right 5.259962e-01	k: 1297672	n:2470000
KS ci ratio: 1.896857e-01	ci left: 1.564798e-04	ci right 1.896499e-04	k: 426	n:2470000
FOXK1   2470000 perm   2616 sec   (944 perm/sec)   p_kst 1.724696e-04   p_cons 5.253733e-01   p_joint 3.251012e-04

Joint ci ratio: 1.379681e-01	ci left: 3.029506e-04	ci right 3.482295e-04	k: 806	n:2480000
Cons ci ratio: 2.365913e-03	ci left: 5.247553e-01	ci right 5.259987e-01	k: 1302935	n:2480000
KS ci ratio: 1.896857e-01	ci left: 1.558488e-04	ci right 1.888852e-04	k: 426	n:2480000
FOXK1   2480000 perm   2636 sec   (941 perm/sec)   p_kst 1.717742e-04   p_cons 5.253770e-01   p_joint 3.250000e-04

Joint ci ratio: 1.375426e-01	ci left: 3.036728e-04	ci right 3.489082e-04	k: 811	n:2490000
Cons ci ratio: 2.361070e-03	ci left: 5.247751e-01	ci right 5.260160e-01	k: 1308235	n:2490000
KS ci ratio: 1.885847e-01	ci left: 1.571359e-04	ci right 1.902296e-04	k: 431	n:2490000
FOXK1   2490000 perm   2655 sec   (938 perm/sec)   p_kst 1.730924e-04   p_cons 5.253956e-01   p_joint 3.257028e-04

Joint ci ratio: 1.372050e-01	ci left: 3.040031e-04	ci right 3.491675e-04	k: 815	n:2500000
Cons ci ratio: 2.356522e-03	ci left: 5.247384e-01	ci right 5.259768e-01	k: 1313394	n:2500000
KS ci ratio: 1.883668e-01	ci left: 1.568885e-04	ci right 1.898876e-04	k: 432	n:2500000
FOXK1   2500000 perm   2675 sec   (935 perm/sec)   p_kst 1.728000e-04   p_cons 5.253576e-01   p_joint 3.260000e-04

Joint ci ratio: 1.370372e-01	ci left: 3.035614e-04	ci right 3.486005e-04	k: 817	n:2510000
Cons ci ratio: 2.351774e-03	ci left: 5.247501e-01	ci right 5.259861e-01	k: 1318674	n:2510000
KS ci ratio: 1.883669e-01	ci left: 1.562634e-04	ci right 1.891310e-04	k: 432	n:2510000
FOXK1   2510000 perm   2694 sec   (932 perm/sec)   p_kst 1.721116e-04   p_cons 5.253681e-01   p_joint 3.254980e-04

Joint ci ratio: 1.369536e-01	ci left: 3.027401e-04	ci right 3.476276e-04	k: 818	n:2520000
Cons ci ratio: 2.347104e-03	ci left: 5.247511e-01	ci right 5.259846e-01	k: 1323927	n:2520000
KS ci ratio: 1.881498e-01	ci left: 1.560215e-04	ci right 1.887960e-04	k: 433	n:2520000
FOXK1   2520000 perm   2714 sec   (929 perm/sec)   p_kst 1.718254e-04   p_cons 5.253679e-01   p_joint 3.246032e-04

Joint ci ratio: 1.365374e-01	ci left: 3.034521e-04	ci right 3.482974e-04	k: 823	n:2530000
Cons ci ratio: 2.342501e-03	ci left: 5.247437e-01	ci right 5.259748e-01	k: 1329159	n:2530000
KS ci ratio: 1.879334e-01	ci left: 1.557814e-04	ci right 1.884636e-04	k: 434	n:2530000
FOXK1   2530000 perm   2734 sec   (925 perm/sec)   p_kst 1.715415e-04   p_cons 5.253593e-01   p_joint 3.252964e-04

Joint ci ratio: 1.361250e-01	ci left: 3.041588e-04	ci right 3.489618e-04	k: 828	n:2540000
Cons ci ratio: 2.337772e-03	ci left: 5.247691e-01	ci right 5.259977e-01	k: 1334474	n:2540000
KS ci ratio: 1.870752e-01	ci left: 1.566690e-04	ci right 1.893703e-04	k: 438	n:2540000
FOXK1   2540000 perm   2753 sec   (923 perm/sec)   p_kst 1.724409e-04   p_cons 5.253835e-01   p_joint 3.259843e-04

Joint ci ratio: 1.357163e-01	ci left: 3.048602e-04	ci right 3.496207e-04	k: 833	n:2550000
Cons ci ratio: 2.333345e-03	ci left: 5.247359e-01	ci right 5.259621e-01	k: 1339640	n:2550000
KS ci ratio: 1.864392e-01	ci left: 1.571761e-04	ci right 1.898591e-04	k: 441	n:2550000
FOXK1   2550000 perm   2773 sec   (920 perm/sec)   p_kst 1.729412e-04   p_cons 5.253490e-01   p_joint 3.266667e-04

Joint ci ratio: 1.353112e-01	ci left: 3.055562e-04	ci right 3.502743e-04	k: 838	n:2560000
Cons ci ratio: 2.328698e-03	ci left: 5.247553e-01	ci right 5.259791e-01	k: 1344940	n:2560000
KS ci ratio: 1.860188e-01	ci left: 1.573069e-04	ci right 1.899351e-04	k: 443	n:2560000
FOXK1   2560000 perm   2793 sec   (917 perm/sec)   p_kst 1.730469e-04   p_cons 5.253672e-01   p_joint 3.273437e-04

Joint ci ratio: 1.349098e-01	ci left: 3.062470e-04	ci right 3.509226e-04	k: 843	n:2570000
Cons ci ratio: 2.324206e-03	ci left: 5.247472e-01	ci right 5.259687e-01	k: 1350170	n:2570000
KS ci ratio: 1.853935e-01	ci left: 1.578079e-04	ci right 1.904175e-04	k: 446	n:2570000
FOXK1   2570000 perm   2813 sec   (914 perm/sec)   p_kst 1.735409e-04   p_cons 5.253580e-01   p_joint 3.280156e-04

Joint ci ratio: 1.390066e-01	ci left: 2.867182e-04	ci right 3.299202e-04	k: 794	n:2580000
Cons ci ratio: 2.319695e-03	ci left: 5.247490e-01	ci right 5.259680e-01	k: 1355425	n:2580000
KS ci ratio: 1.851865e-01	ci left: 1.575659e-04	ci right 1.900850e-04	k: 447	n:2580000
FOXK1   2580000 perm   2833 sec   (911 perm/sec)   p_kst 1.732558e-04   p_cons 5.253585e-01   p_joint 3.077519e-04

Joint ci ratio: 1.387451e-01	ci left: 2.867292e-04	ci right 3.298449e-04	k: 797	n:2590000
Cons ci ratio: 2.315377e-03	ci left: 5.247148e-01	ci right 5.259315e-01	k: 1360587	n:2590000
KS ci ratio: 1.845695e-01	ci left: 1.580622e-04	ci right 1.905630e-04	k: 450	n:2590000
FOXK1   2590000 perm   2853 sec   (908 perm/sec)   p_kst 1.737452e-04   p_cons 5.253232e-01   p_joint 3.077220e-04

Joint ci ratio: 1.385716e-01	ci left: 2.863690e-04	ci right 3.293722e-04	k: 799	n:2600000
Cons ci ratio: 2.310949e-03	ci left: 5.247097e-01	ci right 5.259241e-01	k: 1365824	n:2600000
KS ci ratio: 1.839586e-01	ci left: 1.585549e-04	ci right 1.910370e-04	k: 453	n:2600000
FOXK1   2600000 perm   2873 sec   (905 perm/sec)   p_kst 1.742308e-04   p_cons 5.253169e-01   p_joint 3.073077e-04

Joint ci ratio: 1.384851e-01	ci left: 2.856416e-04	ci right 3.285066e-04	k: 800	n:2610000
Cons ci ratio: 2.306629e-03	ci left: 5.246867e-01	ci right 5.258987e-01	k: 1371014	n:2610000
KS ci ratio: 1.839587e-01	ci left: 1.579474e-04	ci right 1.903051e-04	k: 453	n:2610000
FOXK1   2610000 perm   2893 sec   (902 perm/sec)   p_kst 1.735632e-04   p_cons 5.252927e-01   p_joint 3.065134e-04

Joint ci ratio: 1.382265e-01	ci left: 2.856568e-04	ci right 3.284375e-04	k: 803	n:2620000
Cons ci ratio: 2.302264e-03	ci left: 5.246791e-01	ci right 5.258888e-01	k: 1376244	n:2620000
KS ci ratio: 1.837564e-01	ci left: 1.577087e-04	ci right 1.899780e-04	k: 454	n:2620000
FOXK1   2620000 perm   2914 sec   (899 perm/sec)   p_kst 1.732824e-04   p_cons 5.252840e-01   p_joint 3.064885e-04

Joint ci ratio: 1.377986e-01	ci left: 2.864061e-04	ci right 3.291554e-04	k: 808	n:2630000
Cons ci ratio: 2.297592e-03	ci left: 5.247434e-01	ci right 5.259508e-01	k: 1381663	n:2630000
KS ci ratio: 1.829539e-01	ci left: 1.585601e-04	ci right 1.908462e-04	k: 458	n:2630000
FOXK1   2630000 perm   2934 sec   (896 perm/sec)   p_kst 1.741445e-04   p_cons 5.253471e-01   p_joint 3.072243e-04

Joint ci ratio: 1.373747e-01	ci left: 2.871500e-04	ci right 3.298677e-04	k: 813	n:2640000
Cons ci ratio: 2.293306e-03	ci left: 5.247292e-01	ci right 5.259343e-01	k: 1386876	n:2640000
KS ci ratio: 1.825566e-01	ci left: 1.586824e-04	ci right 1.909155e-04	k: 460	n:2640000
FOXK1   2640000 perm   2954 sec   (894 perm/sec)   p_kst 1.742424e-04   p_cons 5.253318e-01   p_joint 3.079545e-04

Joint ci ratio: 1.371223e-01	ci left: 2.871597e-04	ci right 3.297938e-04	k: 816	n:2650000
Cons ci ratio: 2.288964e-03	ci left: 5.247329e-01	ci right 5.259357e-01	k: 1392136	n:2650000
KS ci ratio: 1.821619e-01	ci left: 1.588039e-04	ci right 1.909842e-04	k: 462	n:2650000
FOXK1   2650000 perm   2975 sec   (891 perm/sec)   p_kst 1.743396e-04   p_cons 5.253343e-01   p_joint 3.079245e-04

Joint ci ratio: 1.369548e-01	ci left: 2.868062e-04	ci right 3.293316e-04	k: 818	n:2660000
Cons ci ratio: 2.284651e-03	ci left: 5.247354e-01	ci right 5.259360e-01	k: 1397393	n:2660000
KS ci ratio: 1.819655e-01	ci left: 1.585657e-04	ci right 1.906593e-04	k: 463	n:2660000
FOXK1   2660000 perm   2995 sec   (888 perm/sec)   p_kst 1.740602e-04   p_cons 5.253357e-01   p_joint 3.075188e-04

Joint ci ratio: 1.367879e-01	ci left: 2.864554e-04	ci right 3.288729e-04	k: 820	n:2670000
Cons ci ratio: 2.280307e-03	ci left: 5.247499e-01	ci right 5.259482e-01	k: 1402682	n:2670000
KS ci ratio: 1.817698e-01	ci left: 1.583293e-04	ci right 1.903368e-04	k: 464	n:2670000
FOXK1   2670000 perm   3015 sec   (885 perm/sec)   p_kst 1.737828e-04   p_cons 5.253491e-01   p_joint 3.071161e-04

Joint ci ratio: 1.365387e-01	ci left: 2.864677e-04	ci right 3.288034e-04	k: 823	n:2680000
Cons ci ratio: 2.276041e-03	ci left: 5.247527e-01	ci right 5.259488e-01	k: 1407940	n:2680000
KS ci ratio: 1.817698e-01	ci left: 1.577385e-04	ci right 1.896266e-04	k: 464	n:2680000
FOXK1   2680000 perm   3036 sec   (883 perm/sec)   p_kst 1.731343e-04   p_cons 5.253507e-01   p_joint 3.070896e-04

Joint ci ratio: 1.362084e-01	ci left: 2.868390e-04	ci right 3.291187e-04	k: 827	n:2690000
Cons ci ratio: 2.271710e-03	ci left: 5.247752e-01	ci right 5.259690e-01	k: 1413251	n:2690000
KS ci ratio: 1.815747e-01	ci left: 1.575070e-04	ci right 1.893103e-04	k: 465	n:2690000
FOXK1   2690000 perm   3057 sec   (880 perm/sec)   p_kst 1.728625e-04   p_cons 5.253721e-01   p_joint 3.074349e-04

Joint ci ratio: 1.362085e-01	ci left: 2.857766e-04	ci right 3.278998e-04	k: 827	n:2700000
Cons ci ratio: 2.267456e-03	ci left: 5.247856e-01	ci right 5.259773e-01	k: 1418530	n:2700000
KS ci ratio: 1.815748e-01	ci left: 1.569236e-04	ci right 1.886091e-04	k: 465	n:2700000
FOXK1   2700000 perm   3077 sec   (877 perm/sec)   p_kst 1.722222e-04   p_cons 5.253815e-01   p_joint 3.062963e-04

Joint ci ratio: 1.357990e-01	ci left: 2.865044e-04	ci right 3.285976e-04	k: 832	n:2710000
Cons ci ratio: 2.263401e-03	ci left: 5.247577e-01	ci right 5.259471e-01	k: 1423705	n:2710000
KS ci ratio: 1.813803e-01	ci left: 1.566968e-04	ci right 1.882989e-04	k: 466	n:2710000
FOXK1   2710000 perm   3098 sec   (875 perm/sec)   p_kst 1.719557e-04   p_cons 5.253524e-01   p_joint 3.070111e-04

Joint ci ratio: 1.594848e-01	ci left: 2.043492e-04	ci right 2.401114e-04	k: 603	n:2720000
Cons ci ratio: 2.259266e-03	ci left: 5.247523e-01	ci right 5.259395e-01	k: 1428941	n:2720000
KS ci ratio: 1.940543e-01	ci left: 1.354475e-04	ci right 1.648987e-04	k: 407	n:2720000
FOXK1   2720000 perm   3119 sec   (872 perm/sec)   p_kst 1.496324e-04   p_cons 5.253460e-01   p_joint 2.216912e-04

Joint ci ratio: 1.589593e-01	ci left: 2.050075e-04	ci right 2.407554e-04	k: 607	n:2730000
Cons ci ratio: 2.255097e-03	ci left: 5.247595e-01	ci right 5.259445e-01	k: 1434211	n:2730000
KS ci ratio: 1.935804e-01	ci left: 1.356484e-04	ci right 1.650628e-04	k: 409	n:2730000
FOXK1   2730000 perm   3140 sec   (869 perm/sec)   p_kst 1.498168e-04   p_cons 5.253520e-01   p_joint 2.223443e-04

Joint ci ratio: 1.585685e-01	ci left: 2.053107e-04	ci right 2.410150e-04	k: 610	n:2740000
Cons ci ratio: 2.250990e-03	ci left: 5.247578e-01	ci right 5.259407e-01	k: 1439457	n:2740000
KS ci ratio: 1.928760e-01	ci left: 1.361953e-04	ci right 1.656081e-04	k: 412	n:2740000
FOXK1   2740000 perm   3162 sec   (867 perm/sec)   p_kst 1.503650e-04   p_cons 5.253493e-01   p_joint 2.226277e-04

Joint ci ratio: 1.633162e-01	ci left: 1.923492e-04	ci right 2.268994e-04	k: 575	n:2750000
Cons ci ratio: 2.246940e-03	ci left: 5.247485e-01	ci right 5.259293e-01	k: 1444682	n:2750000
KS ci ratio: 1.926430e-01	ci left: 1.360461e-04	ci right 1.653871e-04	k: 413	n:2750000
FOXK1   2750000 perm   3183 sec   (864 perm/sec)   p_kst 1.501818e-04   p_cons 5.253389e-01   p_joint 2.090909e-04

Joint ci ratio: 1.631746e-01	ci left: 1.919998e-04	ci right 2.264544e-04	k: 576	n:2760000
Cons ci ratio: 2.242955e-03	ci left: 5.247299e-01	ci right 5.259085e-01	k: 1449881	n:2760000
KS ci ratio: 1.926430e-01	ci left: 1.355532e-04	ci right 1.647878e-04	k: 413	n:2760000
FOXK1   2760000 perm   3204 sec   (861 perm/sec)   p_kst 1.496377e-04   p_cons 5.253192e-01   p_joint 2.086957e-04

Joint ci ratio: 1.631747e-01	ci left: 1.913066e-04	ci right 2.256369e-04	k: 576	n:2770000
Cons ci ratio: 2.238874e-03	ci left: 5.247374e-01	ci right 5.259138e-01	k: 1455152	n:2770000
KS ci ratio: 1.926431e-01	ci left: 1.350638e-04	ci right 1.641930e-04	k: 413	n:2770000
FOXK1   2770000 perm   3225 sec   (859 perm/sec)   p_kst 1.490975e-04   p_cons 5.253256e-01   p_joint 2.079422e-04

Joint ci ratio: 1.631748e-01	ci left: 1.906185e-04	ci right 2.248253e-04	k: 576	n:2780000
Cons ci ratio: 2.234790e-03	ci left: 5.247502e-01	ci right 5.259246e-01	k: 1460438	n:2780000
KS ci ratio: 1.924108e-01	ci left: 1.349204e-04	ci right 1.639794e-04	k: 414	n:2780000
FOXK1   2780000 perm   3246 sec   (856 perm/sec)   p_kst 1.489209e-04   p_cons 5.253374e-01   p_joint 2.071942e-04

Joint ci ratio: 1.630336e-01	ci left: 1.902790e-04	ci right 2.243925e-04	k: 577	n:2790000
Cons ci ratio: 2.230797e-03	ci left: 5.247479e-01	ci right 5.259201e-01	k: 1465682	n:2790000
KS ci ratio: 1.919488e-01	ci left: 1.351191e-04	ci right 1.641429e-04	k: 416	n:2790000
FOXK1   2790000 perm   3268 sec   (854 perm/sec)   p_kst 1.491039e-04   p_cons 5.253341e-01   p_joint 2.068100e-04

Joint ci ratio: 1.626121e-01	ci left: 1.906273e-04	ci right 2.247062e-04	k: 580	n:2800000
Cons ci ratio: 2.226989e-03	ci left: 5.247088e-01	ci right 5.258790e-01	k: 1470823	n:2800000
KS ci ratio: 1.917191e-01	ci left: 1.349766e-04	ci right 1.639310e-04	k: 417	n:2800000
FOXK1   2800000 perm   3289 sec   (851 perm/sec)   p_kst 1.489286e-04   p_cons 5.252939e-01   p_joint 2.071429e-04

Joint ci ratio: 1.620552e-01	ci left: 1.913145e-04	ci right 2.253877e-04	k: 584	n:2810000
Cons ci ratio: 2.222978e-03	ci left: 5.247199e-01	ci right 5.258879e-01	k: 1476104	n:2810000
KS ci ratio: 1.910348e-01	ci left: 1.355127e-04	ci right 1.644663e-04	k: 420	n:2810000
FOXK1   2810000 perm   3310 sec   (849 perm/sec)   p_kst 1.494662e-04   p_cons 5.253039e-01   p_joint 2.078292e-04

Joint ci ratio: 1.619169e-01	ci left: 1.909763e-04	ci right 2.249575e-04	k: 585	n:2820000
Cons ci ratio: 2.218954e-03	ci left: 5.247386e-01	ci right 5.259046e-01	k: 1481407	n:2820000
KS ci ratio: 1.905826e-01	ci left: 1.357075e-04	ci right 1.646261e-04	k: 422	n:2820000
FOXK1   2820000 perm   3332 sec   (846 perm/sec)   p_kst 1.496454e-04   p_cons 5.253216e-01   p_joint 2.074468e-04

Joint ci ratio: 1.616413e-01	ci left: 1.909796e-04	ci right 2.248979e-04	k: 587	n:2830000
Cons ci ratio: 2.214907e-03	ci left: 5.247675e-01	ci right 5.259314e-01	k: 1486739	n:2830000
KS ci ratio: 1.901336e-01	ci left: 1.359010e-04	ci right 1.647848e-04	k: 424	n:2830000
FOXK1   2830000 perm   3354 sec   (844 perm/sec)   p_kst 1.498233e-04   p_cons 5.253495e-01   p_joint 2.074205e-04

Joint ci ratio: 1.616413e-01	ci left: 1.903071e-04	ci right 2.241060e-04	k: 587	n:2840000
Cons ci ratio: 2.210753e-03	ci left: 5.248250e-01	ci right 5.259869e-01	k: 1492153	n:2840000
KS ci ratio: 1.901337e-01	ci left: 1.354225e-04	ci right 1.642045e-04	k: 424	n:2840000
FOXK1   2840000 perm   3375 sec   (841 perm/sec)   p_kst 1.492958e-04   p_cons 5.254060e-01   p_joint 2.066901e-04

Joint ci ratio: 1.615041e-01	ci left: 1.899761e-04	ci right 2.236847e-04	k: 588	n:2850000
Cons ci ratio: 2.206876e-03	ci left: 5.248250e-01	ci right 5.259848e-01	k: 1497404	n:2850000
KS ci ratio: 1.901337e-01	ci left: 1.349473e-04	ci right 1.636284e-04	k: 424	n:2850000
FOXK1   2850000 perm   3397 sec   (839 perm/sec)   p_kst 1.487719e-04   p_cons 5.254049e-01   p_joint 2.063158e-04

Joint ci ratio: 1.606876e-01	ci left: 1.913252e-04	ci right 2.250850e-04	k: 594	n:2860000
Cons ci ratio: 2.202978e-03	ci left: 5.248344e-01	ci right 5.259922e-01	k: 1502682	n:2860000
KS ci ratio: 1.892452e-01	ci left: 1.358076e-04	ci right 1.645212e-04	k: 428	n:2860000
FOXK1   2860000 perm   3419 sec   (836 perm/sec)   p_kst 1.496503e-04   p_cons 5.254133e-01   p_joint 2.076923e-04

Joint ci ratio: 1.605528e-01	ci left: 1.909930e-04	ci right 2.246631e-04	k: 595	n:2870000
Cons ci ratio: 2.199097e-03	ci left: 5.248444e-01	ci right 5.260002e-01	k: 1507962	n:2870000
KS ci ratio: 1.890250e-01	ci left: 1.356664e-04	ci right 1.643129e-04	k: 429	n:2870000
FOXK1   2870000 perm   3442 sec   (834 perm/sec)   p_kst 1.494774e-04   p_cons 5.254223e-01   p_joint 2.073171e-04

Joint ci ratio: 1.604183e-01	ci left: 1.906631e-04	ci right 2.242442e-04	k: 596	n:2880000
Cons ci ratio: 2.195297e-03	ci left: 5.248404e-01	ci right 5.259942e-01	k: 1513202	n:2880000
KS ci ratio: 1.890250e-01	ci left: 1.351953e-04	ci right 1.637423e-04	k: 429	n:2880000
FOXK1   2880000 perm   3464 sec   (831 perm/sec)   p_kst 1.489583e-04   p_cons 5.254174e-01   p_joint 2.069444e-04

Joint ci ratio: 1.601502e-01	ci left: 1.906676e-04	ci right 2.241881e-04	k: 598	n:2890000
Cons ci ratio: 2.191495e-03	ci left: 5.248417e-01	ci right 5.259935e-01	k: 1518457	n:2890000
KS ci ratio: 1.888056e-01	ci left: 1.350572e-04	ci right 1.635381e-04	k: 430	n:2890000
FOXK1   2890000 perm   3485 sec   (829 perm/sec)   p_kst 1.487889e-04   p_cons 5.254176e-01   p_joint 2.069204e-04

Joint ci ratio: 1.598835e-01	ci left: 1.906722e-04	ci right 2.241323e-04	k: 600	n:2900000
Cons ci ratio: 2.187654e-03	ci left: 5.248561e-01	ci right 5.260059e-01	k: 1523750	n:2900000
KS ci ratio: 1.883691e-01	ci left: 1.352486e-04	ci right 1.636964e-04	k: 432	n:2900000
FOXK1   2900000 perm   3508 sec   (827 perm/sec)   p_kst 1.489655e-04   p_cons 5.254310e-01   p_joint 2.068966e-04

Joint ci ratio: 1.597507e-01	ci left: 1.903468e-04	ci right 2.237194e-04	k: 601	n:2910000
Cons ci ratio: 2.183641e-03	ci left: 5.249144e-01	ci right 5.260622e-01	k: 1529171	n:2910000
KS ci ratio: 1.881520e-01	ci left: 1.351112e-04	ci right 1.634937e-04	k: 433	n:2910000
FOXK1   2910000 perm   3530 sec   (824 perm/sec)   p_kst 1.487973e-04   p_cons 5.254883e-01   p_joint 2.065292e-04

Joint ci ratio: 1.594860e-01	ci left: 1.903525e-04	ci right 2.236655e-04	k: 603	n:2920000
Cons ci ratio: 2.179852e-03	ci left: 5.249260e-01	ci right 5.260719e-01	k: 1534457	n:2920000
KS ci ratio: 1.877199e-01	ci left: 1.353012e-04	ci right 1.636509e-04	k: 435	n:2920000
FOXK1   2920000 perm   3553 sec   (822 perm/sec)   p_kst 1.489726e-04   p_cons 5.254990e-01   p_joint 2.065068e-04

Joint ci ratio: 1.340416e-01	ci left: 2.722471e-04	ci right 3.116867e-04	k: 854	n:2930000
Cons ci ratio: 2.176102e-03	ci left: 5.249332e-01	ci right 5.260770e-01	k: 1539730	n:2930000
KS ci ratio: 1.870773e-01	ci left: 1.358153e-04	ci right 1.641642e-04	k: 438	n:2930000
FOXK1   2930000 perm   3575 sec   (820 perm/sec)   p_kst 1.494881e-04   p_cons 5.255051e-01   p_joint 2.914676e-04

Joint ci ratio: 1.337291e-01	ci left: 2.726360e-04	ci right 3.120326e-04	k: 858	n:2940000
Cons ci ratio: 2.172422e-03	ci left: 5.249287e-01	ci right 5.260706e-01	k: 1544969	n:2940000
KS ci ratio: 1.868647e-01	ci left: 1.356776e-04	ci right 1.639618e-04	k: 439	n:2940000
FOXK1   2940000 perm   3597 sec   (817 perm/sec)   p_kst 1.493197e-04   p_cons 5.254997e-01   p_joint 2.918367e-04

Joint ci ratio: 1.342776e-01	ci left: 2.694185e-04	ci right 3.085226e-04	k: 851	n:2950000
Cons ci ratio: 2.168700e-03	ci left: 5.249381e-01	ci right 5.260781e-01	k: 1550249	n:2950000
KS ci ratio: 1.864414e-01	ci left: 1.358639e-04	ci right 1.641156e-04	k: 441	n:2950000
FOXK1   2950000 perm   3620 sec   (815 perm/sec)   p_kst 1.494915e-04   p_cons 5.255081e-01   p_joint 2.884746e-04

Joint ci ratio: 1.340418e-01	ci left: 2.694878e-04	ci right 3.085278e-04	k: 854	n:2960000
Cons ci ratio: 2.165035e-03	ci left: 5.249387e-01	ci right 5.260768e-01	k: 1555503	n:2960000
KS ci ratio: 1.862309e-01	ci left: 1.357270e-04	ci right 1.639148e-04	k: 442	n:2960000
FOXK1   2960000 perm   3642 sec   (813 perm/sec)   p_kst 1.493243e-04   p_cons 5.255078e-01   p_joint 2.885135e-04

Joint ci ratio: 1.339635e-01	ci left: 2.689058e-04	ci right 3.078369e-04	k: 855	n:2970000
Cons ci ratio: 2.161342e-03	ci left: 5.249501e-01	ci right 5.260862e-01	k: 1560789	n:2970000
KS ci ratio: 1.860210e-01	ci left: 1.355910e-04	ci right 1.637153e-04	k: 443	n:2970000
FOXK1   2970000 perm   3666 sec   (810 perm/sec)   p_kst 1.491582e-04   p_cons 5.255182e-01   p_joint 2.878788e-04

Joint ci ratio: 1.334190e-01	ci left: 2.702739e-04	ci right 3.092314e-04	k: 862	n:2980000
Cons ci ratio: 2.157719e-03	ci left: 5.249496e-01	ci right 5.260839e-01	k: 1566040	n:2980000
KS ci ratio: 1.856035e-01	ci left: 1.357760e-04	ci right 1.638682e-04	k: 445	n:2980000
FOXK1   2980000 perm   3689 sec   (808 perm/sec)   p_kst 1.493289e-04   p_cons 5.255168e-01   p_joint 2.892617e-04

Joint ci ratio: 1.333418e-01	ci left: 2.696933e-04	ci right 3.085428e-04	k: 863	n:2990000
Cons ci ratio: 2.154132e-03	ci left: 5.249448e-01	ci right 5.260772e-01	k: 1571278	n:2990000
KS ci ratio: 1.853957e-01	ci left: 1.356408e-04	ci right 1.636701e-04	k: 446	n:2990000
FOXK1   2990000 perm   3712 sec   (806 perm/sec)   p_kst 1.491639e-04   p_cons 5.255110e-01   p_joint 2.886288e-04

Joint ci ratio: 1.369572e-01	ci left: 2.543012e-04	ci right 2.920077e-04	k: 818	n:3000000
Cons ci ratio: 2.150603e-03	ci left: 5.249311e-01	ci right 5.260615e-01	k: 1576489	n:3000000
KS ci ratio: 1.851887e-01	ci left: 1.355065e-04	ci right 1.634733e-04	k: 447	n:3000000
FOXK1   3000000 perm   3734 sec   (803 perm/sec)   p_kst 1.490000e-04   p_cons 5.254963e-01   p_joint 2.726667e-04

Joint ci ratio: 1.365410e-01	ci left: 2.550607e-04	ci right 2.927555e-04	k: 823	n:3010000
Cons ci ratio: 2.147139e-03	ci left: 5.249061e-01	ci right 5.260347e-01	k: 1581666	n:3010000
KS ci ratio: 1.845717e-01	ci left: 1.360069e-04	ci right 1.639730e-04	k: 450	n:3010000
FOXK1   3010000 perm   3757 sec   (801 perm/sec)   p_kst 1.495017e-04   p_cons 5.254704e-01   p_joint 2.734219e-04

Joint ci ratio: 1.362107e-01	ci left: 2.554954e-04	ci right 2.931558e-04	k: 827	n:3020000
Cons ci ratio: 2.143572e-03	ci left: 5.249091e-01	ci right 5.260358e-01	k: 1586927	n:3020000
KS ci ratio: 1.839609e-01	ci left: 1.365041e-04	ci right 1.644692e-04	k: 453	n:3020000
FOXK1   3020000 perm   3780 sec   (799 perm/sec)   p_kst 1.500000e-04   p_cons 5.254725e-01   p_joint 2.738411e-04

Joint ci ratio: 1.358829e-01	ci left: 2.559274e-04	ci right 2.935533e-04	k: 831	n:3030000
Cons ci ratio: 2.140091e-03	ci left: 5.248963e-01	ci right 5.260211e-01	k: 1592140	n:3030000
KS ci ratio: 1.835570e-01	ci left: 1.366833e-04	ci right 1.646167e-04	k: 455	n:3030000
FOXK1   3030000 perm   3803 sec   (797 perm/sec)   p_kst 1.501650e-04   p_cons 5.254587e-01   p_joint 2.742574e-04

Joint ci ratio: 1.382294e-01	ci left: 2.461907e-04	ci right 2.830617e-04	k: 803	n:3040000
Cons ci ratio: 2.136590e-03	ci left: 5.248921e-01	ci right 5.260151e-01	k: 1597379	n:3040000
KS ci ratio: 1.835570e-01	ci left: 1.362337e-04	ci right 1.640752e-04	k: 455	n:3040000
FOXK1   3040000 perm   3826 sec   (795 perm/sec)   p_kst 1.496711e-04   p_cons 5.254536e-01   p_joint 2.641447e-04

Joint ci ratio: 1.379723e-01	ci left: 2.463331e-04	ci right 2.831512e-04	k: 806	n:3050000
Cons ci ratio: 2.133091e-03	ci left: 5.248915e-01	ci right 5.260127e-01	k: 1602629	n:3050000
KS ci ratio: 1.831558e-01	ci left: 1.364126e-04	ci right 1.642231e-04	k: 457	n:3050000
FOXK1   3050000 perm   3849 sec   (792 perm/sec)   p_kst 1.498361e-04   p_cons 5.254521e-01   p_joint 2.642623e-04

Joint ci ratio: 1.378016e-01	ci left: 2.461592e-04	ci right 2.829020e-04	k: 808	n:3060000
Cons ci ratio: 2.129656e-03	ci left: 5.248799e-01	ci right 5.259992e-01	k: 1607845	n:3060000
KS ci ratio: 1.827572e-01	ci left: 1.365905e-04	ci right 1.643699e-04	k: 459	n:3060000
FOXK1   3060000 perm   3872 sec   (790 perm/sec)   p_kst 1.500000e-04   p_cons 5.254395e-01   p_joint 2.640523e-04

Joint ci ratio: 1.377166e-01	ci left: 2.456719e-04	ci right 2.823174e-04	k: 809	n:3070000
Cons ci ratio: 2.126137e-03	ci left: 5.248920e-01	ci right 5.260095e-01	k: 1613134	n:3070000
KS ci ratio: 1.825589e-01	ci left: 1.364564e-04	ci right 1.641751e-04	k: 460	n:3070000
FOXK1   3070000 perm   3895 sec   (788 perm/sec)   p_kst 1.498371e-04   p_cons 5.254508e-01   p_joint 2.635179e-04

Joint ci ratio: 1.375469e-01	ci left: 2.455012e-04	ci right 2.820725e-04	k: 811	n:3080000
Cons ci ratio: 2.122587e-03	ci left: 5.249155e-01	ci right 5.260312e-01	k: 1618458	n:3080000
KS ci ratio: 1.823612e-01	ci left: 1.363232e-04	ci right 1.639816e-04	k: 461	n:3080000
FOXK1   3080000 perm   3918 sec   (786 perm/sec)   p_kst 1.496753e-04   p_cons 5.254734e-01   p_joint 2.633117e-04

Joint ci ratio: 1.373778e-01	ci left: 2.453317e-04	ci right 2.818291e-04	k: 813	n:3090000
Cons ci ratio: 2.119126e-03	ci left: 5.249220e-01	ci right 5.260359e-01	k: 1623730	n:3090000
KS ci ratio: 1.821642e-01	ci left: 1.361909e-04	ci right 1.637893e-04	k: 462	n:3090000
FOXK1   3090000 perm   3942 sec   (784 perm/sec)   p_kst 1.495146e-04   p_cons 5.254790e-01   p_joint 2.631068e-04

Joint ci ratio: 1.372094e-01	ci left: 2.451633e-04	ci right 2.815873e-04	k: 815	n:3100000
Cons ci ratio: 2.115690e-03	ci left: 5.249265e-01	ci right 5.260386e-01	k: 1628996	n:3100000
KS ci ratio: 1.819678e-01	ci left: 1.360595e-04	ci right 1.635982e-04	k: 463	n:3100000
FOXK1   3100000 perm   3965 sec   (782 perm/sec)   p_kst 1.493548e-04   p_cons 5.254826e-01   p_joint 2.629032e-04

Joint ci ratio: 1.371254e-01	ci left: 2.446855e-04	ci right 2.810145e-04	k: 816	n:3110000
Cons ci ratio: 2.112533e-03	ci left: 5.248690e-01	ci right 5.259792e-01	k: 1634069	n:3110000
KS ci ratio: 1.819678e-01	ci left: 1.356220e-04	ci right 1.630721e-04	k: 463	n:3110000
FOXK1   3110000 perm   3989 sec   (780 perm/sec)   p_kst 1.488746e-04   p_cons 5.254241e-01   p_joint 2.623794e-04

Joint ci ratio: 1.368743e-01	ci left: 2.448298e-04	ci right 2.811082e-04	k: 819	n:3120000
Cons ci ratio: 2.109168e-03	ci left: 5.248643e-01	ci right 5.259728e-01	k: 1639306	n:3120000
KS ci ratio: 1.817721e-01	ci left: 1.354932e-04	ci right 1.628846e-04	k: 464	n:3120000
FOXK1   3120000 perm   4013 sec   (778 perm/sec)   p_kst 1.487179e-04   p_cons 5.254186e-01   p_joint 2.625000e-04

Joint ci ratio: 1.367077e-01	ci left: 2.446647e-04	ci right 2.808710e-04	k: 821	n:3130000
Cons ci ratio: 2.105828e-03	ci left: 5.248578e-01	ci right 5.259645e-01	k: 1644537	n:3130000
KS ci ratio: 1.813824e-01	ci left: 1.356703e-04	ci right 1.630321e-04	k: 466	n:3130000
FOXK1   3130000 perm   4037 sec   (775 perm/sec)   p_kst 1.488818e-04   p_cons 5.254112e-01   p_joint 2.623003e-04

Joint ci ratio: 1.365417e-01	ci left: 2.445007e-04	ci right 2.806352e-04	k: 823	n:3140000
Cons ci ratio: 2.102465e-03	ci left: 5.248602e-01	ci right 5.259652e-01	k: 1649796	n:3140000
KS ci ratio: 1.809952e-01	ci left: 1.358462e-04	ci right 1.631787e-04	k: 468	n:3140000
FOXK1   3140000 perm   4061 sec   (773 perm/sec)   p_kst 1.490446e-04   p_cons 5.254127e-01   p_joint 2.621019e-04

Joint ci ratio: 1.363763e-01	ci left: 2.443378e-04	ci right 2.804009e-04	k: 825	n:3150000
Cons ci ratio: 2.099195e-03	ci left: 5.248446e-01	ci right 5.259478e-01	k: 1654998	n:3150000
KS ci ratio: 1.808026e-01	ci left: 1.357181e-04	ci right 1.629925e-04	k: 469	n:3150000
FOXK1   3150000 perm   4085 sec   (771 perm/sec)   p_kst 1.488889e-04   p_cons 5.253962e-01   p_joint 2.619048e-04

Joint ci ratio: 1.362939e-01	ci left: 2.438702e-04	ci right 2.798408e-04	k: 826	n:3160000
Cons ci ratio: 2.095913e-03	ci left: 5.248353e-01	ci right 5.259368e-01	k: 1660220	n:3160000
KS ci ratio: 1.808026e-01	ci left: 1.352886e-04	ci right 1.624767e-04	k: 469	n:3160000
FOXK1   3160000 perm   4109 sec   (769 perm/sec)   p_kst 1.484177e-04   p_cons 5.253861e-01   p_joint 2.613924e-04

Joint ci ratio: 1.360474e-01	ci left: 2.440150e-04	ci right 2.799366e-04	k: 829	n:3170000
Cons ci ratio: 2.092599e-03	ci left: 5.248375e-01	ci right 5.259372e-01	k: 1665478	n:3170000
KS ci ratio: 1.806106e-01	ci left: 1.351630e-04	ci right 1.622939e-04	k: 470	n:3170000
FOXK1   3170000 perm   4133 sec   (767 perm/sec)   p_kst 1.482650e-04   p_cons 5.253874e-01   p_joint 2.615142e-04

Joint ci ratio: 1.358021e-01	ci left: 2.441590e-04	ci right 2.800317e-04	k: 832	n:3180000
Cons ci ratio: 2.089243e-03	ci left: 5.248535e-01	ci right 5.259515e-01	k: 1670780	n:3180000
KS ci ratio: 1.804192e-01	ci left: 1.350382e-04	ci right 1.621122e-04	k: 471	n:3180000
FOXK1   3180000 perm   4157 sec   (765 perm/sec)   p_kst 1.481132e-04   p_cons 5.254025e-01   p_joint 2.616352e-04

Joint ci ratio: 1.396269e-01	ci left: 2.297729e-04	ci right 2.645618e-04	k: 787	n:3190000
Cons ci ratio: 2.085963e-03	ci left: 5.248550e-01	ci right 5.259512e-01	k: 1676036	n:3190000
KS ci ratio: 1.802284e-01	ci left: 1.349142e-04	ci right 1.619316e-04	k: 472	n:3190000
FOXK1   3190000 perm   4181 sec   (763 perm/sec)   p_kst 1.479624e-04   p_cons 5.254031e-01   p_joint 2.467085e-04

Joint ci ratio: 1.394501e-01	ci left: 2.296580e-04	ci right 2.643819e-04	k: 789	n:3200000
Cons ci ratio: 2.082735e-03	ci left: 5.248477e-01	ci right 5.259423e-01	k: 1681264	n:3200000
KS ci ratio: 1.798486e-01	ci left: 1.350894e-04	ci right 1.620787e-04	k: 474	n:3200000
FOXK1   3200000 perm   4205 sec   (761 perm/sec)   p_kst 1.481250e-04   p_cons 5.253950e-01   p_joint 2.465625e-04

Joint ci ratio: 1.393620e-01	ci left: 2.292432e-04	ci right 2.638806e-04	k: 790	n:3210000
Cons ci ratio: 2.079470e-03	ci left: 5.248529e-01	ci right 5.259458e-01	k: 1686532	n:3210000
KS ci ratio: 1.798486e-01	ci left: 1.346686e-04	ci right 1.615738e-04	k: 474	n:3210000
FOXK1   3210000 perm   4229 sec   (759 perm/sec)   p_kst 1.476636e-04   p_cons 5.253994e-01   p_joint 2.461059e-04

Joint ci ratio: 1.392740e-01	ci left: 2.288310e-04	ci right 2.633825e-04	k: 791	n:3220000
Cons ci ratio: 2.076232e-03	ci left: 5.248553e-01	ci right 5.259465e-01	k: 1691791	n:3220000
KS ci ratio: 1.798486e-01	ci left: 1.342504e-04	ci right 1.610720e-04	k: 474	n:3220000
FOXK1   3220000 perm   4254 sec   (757 perm/sec)   p_kst 1.472050e-04   p_cons 5.254009e-01   p_joint 2.456522e-04

Joint ci ratio: 1.390985e-01	ci left: 2.287202e-04	ci right 2.632078e-04	k: 793	n:3230000
Cons ci ratio: 2.073115e-03	ci left: 5.248323e-01	ci right 5.259218e-01	k: 1696968	n:3230000
KS ci ratio: 1.796596e-01	ci left: 1.341304e-04	ci right 1.608969e-04	k: 475	n:3230000
FOXK1   3230000 perm   4278 sec   (755 perm/sec)   p_kst 1.470588e-04   p_cons 5.253771e-01   p_joint 2.455108e-04

Joint ci ratio: 1.389236e-01	ci left: 2.286101e-04	ci right 2.630342e-04	k: 795	n:3240000
Cons ci ratio: 2.069908e-03	ci left: 5.248345e-01	ci right 5.259223e-01	k: 1702226	n:3240000
KS ci ratio: 1.794712e-01	ci left: 1.340112e-04	ci right 1.607228e-04	k: 476	n:3240000
FOXK1   3240000 perm   4302 sec   (753 perm/sec)   p_kst 1.469136e-04   p_cons 5.253784e-01   p_joint 2.453704e-04

Joint ci ratio: 1.386626e-01	ci left: 2.287977e-04	ci right 2.631800e-04	k: 798	n:3250000
Cons ci ratio: 2.066695e-03	ci left: 5.248415e-01	ci right 5.259276e-01	k: 1707500	n:3250000
KS ci ratio: 1.790961e-01	ci left: 1.341866e-04	ci right 1.608712e-04	k: 478	n:3250000
FOXK1   3250000 perm   4327 sec   (751 perm/sec)   p_kst 1.470769e-04   p_cons 5.253846e-01   p_joint 2.455385e-04

Joint ci ratio: 1.384030e-01	ci left: 2.289842e-04	ci right 2.633248e-04	k: 801	n:3260000
Cons ci ratio: 2.063563e-03	ci left: 5.248326e-01	ci right 5.259170e-01	k: 1712722	n:3260000
KS ci ratio: 1.785379e-01	ci left: 1.346541e-04	ci right 1.613391e-04	k: 481	n:3260000
FOXK1   3260000 perm   4351 sec   (749 perm/sec)   p_kst 1.475460e-04   p_cons 5.253748e-01   p_joint 2.457055e-04

Joint ci ratio: 1.380591e-01	ci left: 2.294649e-04	ci right 2.637850e-04	k: 805	n:3270000
Cons ci ratio: 2.060404e-03	ci left: 5.248338e-01	ci right 5.259166e-01	k: 1717977	n:3270000
KS ci ratio: 1.779848e-01	ci left: 1.351188e-04	ci right 1.618041e-04	k: 484	n:3270000
FOXK1   3270000 perm   4376 sec   (747 perm/sec)   p_kst 1.480122e-04   p_cons 5.253752e-01   p_joint 2.461774e-04

Joint ci ratio: 1.374633e-01	ci left: 2.308259e-04	ci right 2.651885e-04	k: 812	n:3280000
Cons ci ratio: 2.057248e-03	ci left: 5.248378e-01	ci right 5.259189e-01	k: 1723241	n:3280000
KS ci ratio: 1.772553e-01	ci left: 1.358721e-04	ci right 1.625844e-04	k: 488	n:3280000
FOXK1   3280000 perm   4401 sec   (745 perm/sec)   p_kst 1.487805e-04   p_cons 5.253784e-01   p_joint 2.475610e-04

Joint ci ratio: 1.372946e-01	ci left: 2.307113e-04	ci right 2.650112e-04	k: 814	n:3290000
Cons ci ratio: 2.054143e-03	ci left: 5.248329e-01	ci right 5.259124e-01	k: 1728476	n:3290000
KS ci ratio: 1.770743e-01	ci left: 1.357496e-04	ci right 1.624077e-04	k: 489	n:3290000
FOXK1   3290000 perm   4426 sec   (743 perm/sec)   p_kst 1.486322e-04   p_cons 5.253726e-01   p_joint 2.474164e-04

Joint ci ratio: 1.372946e-01	ci left: 2.300122e-04	ci right 2.642081e-04	k: 814	n:3300000
Cons ci ratio: 2.051109e-03	ci left: 5.248141e-01	ci right 5.258919e-01	k: 1733665	n:3300000
KS ci ratio: 1.770744e-01	ci left: 1.353383e-04	ci right 1.619155e-04	k: 489	n:3300000
FOXK1   3300000 perm   4451 sec   (741 perm/sec)   p_kst 1.481818e-04   p_cons 5.253530e-01   p_joint 2.466667e-04

Joint ci ratio: 1.372105e-01	ci left: 2.296090e-04	ci right 2.637224e-04	k: 815	n:3310000
Cons ci ratio: 2.047934e-03	ci left: 5.248329e-01	ci right 5.259091e-01	k: 1738978	n:3310000
KS ci ratio: 1.770744e-01	ci left: 1.349294e-04	ci right 1.614264e-04	k: 489	n:3310000
FOXK1   3310000 perm   4476 sec   (740 perm/sec)   p_kst 1.477341e-04   p_cons 5.253710e-01   p_joint 2.462236e-04

Joint ci ratio: 1.372106e-01	ci left: 2.289174e-04	ci right 2.629281e-04	k: 815	n:3320000
Cons ci ratio: 2.044785e-03	ci left: 5.248488e-01	ci right 5.259234e-01	k: 1744282	n:3320000
KS ci ratio: 1.770745e-01	ci left: 1.345230e-04	ci right 1.609401e-04	k: 489	n:3320000
FOXK1   3320000 perm   4501 sec   (738 perm/sec)   p_kst 1.472892e-04   p_cons 5.253861e-01   p_joint 2.454819e-04

Joint ci ratio: 1.370427e-01	ci left: 2.288100e-04	ci right 2.627597e-04	k: 817	n:3330000
Cons ci ratio: 2.041726e-03	ci left: 5.248464e-01	ci right 5.259193e-01	k: 1749525	n:3330000
KS ci ratio: 1.768941e-01	ci left: 1.344060e-04	ci right 1.607704e-04	k: 490	n:3330000
FOXK1   3330000 perm   4526 sec   (736 perm/sec)   p_kst 1.471471e-04   p_cons 5.253829e-01   p_joint 2.453453e-04

Joint ci ratio: 1.367921e-01	ci left: 2.289924e-04	ci right 2.629019e-04	k: 820	n:3340000
Cons ci ratio: 2.038759e-03	ci left: 5.248248e-01	ci right 5.258961e-01	k: 1754704	n:3340000
KS ci ratio: 1.765349e-01	ci left: 1.345759e-04	ci right 1.609143e-04	k: 492	n:3340000
FOXK1   3340000 perm   4552 sec   (734 perm/sec)   p_kst 1.473054e-04   p_cons 5.253605e-01   p_joint 2.455090e-04

Joint ci ratio: 1.362126e-01	ci left: 2.303270e-04	ci right 2.642780e-04	k: 827	n:3350000
Cons ci ratio: 2.035650e-03	ci left: 5.248412e-01	ci right 5.259110e-01	k: 1760010	n:3350000
KS ci ratio: 1.754702e-01	ci left: 1.358863e-04	ci right 1.623038e-04	k: 498	n:3350000
FOXK1   3350000 perm   4579 sec   (732 perm/sec)   p_kst 1.486567e-04   p_cons 5.253761e-01   p_joint 2.468657e-04

Joint ci ratio: 1.360484e-01	ci left: 2.302165e-04	ci right 2.641070e-04	k: 829	n:3360000
Cons ci ratio: 2.032531e-03	ci left: 5.248635e-01	ci right 5.259317e-01	k: 1765336	n:3360000
KS ci ratio: 1.754702e-01	ci left: 1.354819e-04	ci right 1.618208e-04	k: 498	n:3360000
FOXK1   3360000 perm   4604 sec   (730 perm/sec)   p_kst 1.482143e-04   p_cons 5.253976e-01   p_joint 2.467262e-04

Joint ci ratio: 1.357217e-01	ci left: 2.306799e-04	ci right 2.645505e-04	k: 833	n:3370000
Cons ci ratio: 2.029391e-03	ci left: 5.248943e-01	ci right 5.259609e-01	k: 1770691	n:3370000
KS ci ratio: 1.749451e-01	ci left: 1.359310e-04	ci right 1.622698e-04	k: 501	n:3370000
FOXK1   3370000 perm   4629 sec   (728 perm/sec)   p_kst 1.486647e-04   p_cons 5.254276e-01   p_joint 2.471810e-04

Joint ci ratio: 1.355592e-01	ci left: 2.305691e-04	ci right 2.643796e-04	k: 835	n:3380000
Cons ci ratio: 2.026456e-03	ci left: 5.248781e-01	ci right 5.259431e-01	k: 1775888	n:3380000
KS ci ratio: 1.747711e-01	ci left: 1.358118e-04	ci right 1.620985e-04	k: 502	n:3380000
FOXK1   3380000 perm   4655 sec   (726 perm/sec)   p_kst 1.485207e-04   p_cons 5.254107e-01   p_joint 2.470414e-04

Joint ci ratio: 1.351556e-01	ci left: 2.313139e-04	ci right 2.651246e-04	k: 840	n:3390000
Cons ci ratio: 2.023371e-03	ci left: 5.249019e-01	ci right 5.259653e-01	k: 1781220	n:3390000
KS ci ratio: 1.740803e-01	ci left: 1.365396e-04	ci right 1.628518e-04	k: 506	n:3390000
FOXK1   3390000 perm   4681 sec   (724 perm/sec)   p_kst 1.492625e-04   p_cons 5.254336e-01   p_joint 2.477876e-04

Joint ci ratio: 1.349152e-01	ci left: 2.314861e-04	ci right 2.652569e-04	k: 843	n:3400000
Cons ci ratio: 2.020270e-03	ci left: 5.249332e-01	ci right 5.259950e-01	k: 1786578	n:3400000
KS ci ratio: 1.740803e-01	ci left: 1.361380e-04	ci right 1.623728e-04	k: 506	n:3400000
FOXK1   3400000 perm   4706 sec   (722 perm/sec)   p_kst 1.488235e-04   p_cons 5.254641e-01   p_joint 2.479412e-04

Joint ci ratio: 1.345966e-01	ci left: 2.319408e-04	ci right 2.656916e-04	k: 847	n:3410000
Cons ci ratio: 2.017290e-03	ci left: 5.249379e-01	ci right 5.259982e-01	k: 1791846	n:3410000
KS ci ratio: 1.735675e-01	ci left: 1.365803e-04	ci right 1.628146e-04	k: 509	n:3410000
FOXK1   3410000 perm   4732 sec   (721 perm/sec)   p_kst 1.492669e-04   p_cons 5.254680e-01   p_joint 2.483871e-04

Joint ci ratio: 1.342802e-01	ci left: 2.323928e-04	ci right 2.661236e-04	k: 851	n:3420000
Cons ci ratio: 2.014226e-03	ci left: 5.249665e-01	ci right 5.260253e-01	k: 1797196	n:3420000
KS ci ratio: 1.730592e-01	ci left: 1.370201e-04	ci right 1.632538e-04	k: 512	n:3420000
FOXK1   3420000 perm   4758 sec   (719 perm/sec)   p_kst 1.497076e-04   p_cons 5.254959e-01   p_joint 2.488304e-04

Joint ci ratio: 1.394513e-01	ci left: 2.142581e-04	ci right 2.466538e-04	k: 789	n:3430000
Cons ci ratio: 2.011202e-03	ci left: 5.249886e-01	ci right 5.260458e-01	k: 1802524	n:3430000
KS ci ratio: 1.728908e-01	ci left: 1.368995e-04	ci right 1.630820e-04	k: 513	n:3430000
FOXK1   3430000 perm   4784 sec   (717 perm/sec)   p_kst 1.495627e-04   p_cons 5.255172e-01   p_joint 2.300292e-04

Joint ci ratio: 1.392751e-01	ci left: 2.141963e-04	ci right 2.465384e-04	k: 791	n:3440000
Cons ci ratio: 2.008173e-03	ci left: 5.250149e-01	ci right 5.260705e-01	k: 1807867	n:3440000
KS ci ratio: 1.725554e-01	ci left: 1.370578e-04	ci right 1.632144e-04	k: 515	n:3440000
FOXK1   3440000 perm   4810 sec   (715 perm/sec)   p_kst 1.497093e-04   p_cons 5.255427e-01   p_joint 2.299419e-04

Joint ci ratio: 1.391873e-01	ci left: 2.138552e-04	ci right 2.461238e-04	k: 792	n:3450000
Cons ci ratio: 2.005278e-03	ci left: 5.250115e-01	ci right 5.260656e-01	k: 1813108	n:3450000
KS ci ratio: 1.722220e-01	ci left: 1.372152e-04	ci right 1.633460e-04	k: 517	n:3450000
FOXK1   3450000 perm   4836 sec   (713 perm/sec)   p_kst 1.498551e-04   p_cons 5.255386e-01   p_joint 2.295652e-04

Joint ci ratio: 1.388375e-01	ci left: 2.143530e-04	ci right 2.466087e-04	k: 796	n:3460000
Cons ci ratio: 2.002441e-03	ci left: 5.249965e-01	ci right 5.260491e-01	k: 1818309	n:3460000
KS ci ratio: 1.718904e-01	ci left: 1.373718e-04	ci right 1.634768e-04	k: 519	n:3460000
FOXK1   3460000 perm   4862 sec   (712 perm/sec)   p_kst 1.500000e-04   p_cons 5.255228e-01   p_joint 2.300578e-04

Joint ci ratio: 1.387505e-01	ci left: 2.140135e-04	ci right 2.461962e-04	k: 797	n:3470000
Cons ci ratio: 1.999622e-03	ci left: 5.249802e-01	ci right 5.260313e-01	k: 1823505	n:3470000
KS ci ratio: 1.717254e-01	ci left: 1.372517e-04	ci right 1.633063e-04	k: 520	n:3470000
FOXK1   3470000 perm   4889 sec   (710 perm/sec)   p_kst 1.498559e-04   p_cons 5.255058e-01   p_joint 2.296830e-04

Joint ci ratio: 1.391874e-01	ci left: 2.120116e-04	ci right 2.440020e-04	k: 792	n:3480000
Cons ci ratio: 1.996735e-03	ci left: 5.249838e-01	ci right 5.260334e-01	k: 1828770	n:3480000
KS ci ratio: 1.713967e-01	ci left: 1.374073e-04	ci right 1.634363e-04	k: 522	n:3480000
FOXK1   3480000 perm   4915 sec   (708 perm/sec)   p_kst 1.500000e-04   p_cons 5.255086e-01   p_joint 2.275862e-04

Joint ci ratio: 1.390997e-01	ci left: 2.116807e-04	ci right 2.435994e-04	k: 793	n:3490000
Cons ci ratio: 1.993993e-03	ci left: 5.249545e-01	ci right 5.260025e-01	k: 1833920	n:3490000
KS ci ratio: 1.712331e-01	ci left: 1.372879e-04	ci right 1.632669e-04	k: 523	n:3490000
FOXK1   3490000 perm   4941 sec   (706 perm/sec)   p_kst 1.498567e-04   p_cons 5.254785e-01   p_joint 2.272206e-04

Joint ci ratio: 1.390123e-01	ci left: 2.113517e-04	ci right 2.431990e-04	k: 794	n:3500000
Cons ci ratio: 1.991155e-03	ci left: 5.249521e-01	ci right 5.259987e-01	k: 1839164	n:3500000
KS ci ratio: 1.710700e-01	ci left: 1.371691e-04	ci right 1.630983e-04	k: 524	n:3500000
FOXK1   3500000 perm   4968 sec   (705 perm/sec)   p_kst 1.497143e-04   p_cons 5.254754e-01   p_joint 2.268571e-04

Joint ci ratio: 1.387507e-01	ci left: 2.115746e-04	ci right 2.433905e-04	k: 797	n:3510000
Cons ci ratio: 1.988242e-03	ci left: 5.249715e-01	ci right 5.260165e-01	k: 1844484	n:3510000
KS ci ratio: 1.709073e-01	ci left: 1.370510e-04	ci right 1.629307e-04	k: 525	n:3510000
FOXK1   3510000 perm   4994 sec   (703 perm/sec)   p_kst 1.495726e-04   p_cons 5.254940e-01   p_joint 2.270655e-04

Joint ci ratio: 1.386639e-01	ci left: 2.112477e-04	ci right 2.429930e-04	k: 798	n:3520000
Cons ci ratio: 1.985346e-03	ci left: 5.249898e-01	ci right 5.260334e-01	k: 1849801	n:3520000
KS ci ratio: 1.705833e-01	ci left: 1.372056e-04	ci right 1.630603e-04	k: 527	n:3520000
FOXK1   3520000 perm   5021 sec   (701 perm/sec)   p_kst 1.497159e-04   p_cons 5.255116e-01   p_joint 2.267045e-04

Joint ci ratio: 1.384043e-01	ci left: 2.114697e-04	ci right 2.431840e-04	k: 801	n:3530000
Cons ci ratio: 1.982567e-03	ci left: 5.249818e-01	ci right 5.260239e-01	k: 1855025	n:3530000
KS ci ratio: 1.704220e-01	ci left: 1.370881e-04	ci right 1.628937e-04	k: 528	n:3530000
FOXK1   3530000 perm   5047 sec   (699 perm/sec)   p_kst 1.495751e-04   p_cons 5.255028e-01   p_joint 2.269122e-04

Joint ci ratio: 1.392755e-01	ci left: 2.081456e-04	ci right 2.395741e-04	k: 791	n:3540000
Cons ci ratio: 1.979786e-03	ci left: 5.249771e-01	ci right 5.260178e-01	k: 1860261	n:3540000
KS ci ratio: 1.702611e-01	ci left: 1.369713e-04	ci right 1.627281e-04	k: 529	n:3540000
FOXK1   3540000 perm   5074 sec   (698 perm/sec)   p_kst 1.494350e-04   p_cons 5.254975e-01   p_joint 2.234463e-04

Joint ci ratio: 1.412517e-01	ci left: 2.015795e-04	ci right 2.324848e-04	k: 769	n:3550000
Cons ci ratio: 1.976918e-03	ci left: 5.249973e-01	ci right 5.260365e-01	k: 1865585	n:3550000
KS ci ratio: 1.701008e-01	ci left: 1.368551e-04	ci right 1.625634e-04	k: 530	n:3550000
FOXK1   3550000 perm   5101 sec   (696 perm/sec)   p_kst 1.492958e-04   p_cons 5.255169e-01   p_joint 2.166197e-04

Joint ci ratio: 1.409773e-01	ci left: 2.018262e-04	ci right 2.327042e-04	k: 772	n:3560000
Cons ci ratio: 1.974216e-03	ci left: 5.249789e-01	ci right 5.260166e-01	k: 1870772	n:3560000
KS ci ratio: 1.697813e-01	ci left: 1.370086e-04	ci right 1.626924e-04	k: 532	n:3560000
FOXK1   3560000 perm   5128 sec   (694 perm/sec)   p_kst 1.494382e-04   p_cons 5.254978e-01   p_joint 2.168539e-04

Joint ci ratio: 1.407045e-01	ci left: 2.020716e-04	ci right 2.329223e-04	k: 775	n:3570000
Cons ci ratio: 1.971393e-03	ci left: 5.249936e-01	ci right 5.260299e-01	k: 1876077	n:3570000
KS ci ratio: 1.694637e-01	ci left: 1.371613e-04	ci right 1.628207e-04	k: 534	n:3570000
FOXK1   3570000 perm   5155 sec   (693 perm/sec)   p_kst 1.495798e-04   p_cons 5.255118e-01   p_joint 2.170868e-04

Joint ci ratio: 1.406139e-01	ci left: 2.017766e-04	ci right 2.325608e-04	k: 776	n:3580000
Cons ci ratio: 1.968527e-03	ci left: 5.250225e-01	ci right 5.260573e-01	k: 1881433	n:3580000
KS ci ratio: 1.694637e-01	ci left: 1.367781e-04	ci right 1.623659e-04	k: 534	n:3580000
FOXK1   3580000 perm   5182 sec   (691 perm/sec)   p_kst 1.491620e-04   p_cons 5.255399e-01   p_joint 2.167598e-04

Joint ci ratio: 1.402534e-01	ci left: 2.022896e-04	ci right 2.330664e-04	k: 780	n:3590000
Cons ci ratio: 1.965886e-03	ci left: 5.249972e-01	ci right 5.260306e-01	k: 1886595	n:3590000
KS ci ratio: 1.689905e-01	ci left: 1.371974e-04	ci right 1.627846e-04	k: 537	n:3590000
FOXK1   3590000 perm   5210 sec   (689 perm/sec)   p_kst 1.495822e-04   p_cons 5.255139e-01   p_joint 2.172702e-04

Joint ci ratio: 1.400741e-01	ci left: 2.022638e-04	ci right 2.329940e-04	k: 782	n:3600000
Cons ci ratio: 1.963122e-03	ci left: 5.250060e-01	ci right 5.260379e-01	k: 1891879	n:3600000
KS ci ratio: 1.688337e-01	ci left: 1.370823e-04	ci right 1.626220e-04	k: 538	n:3600000
FOXK1   3600000 perm   5237 sec   (687 perm/sec)   p_kst 1.494444e-04   p_cons 5.255219e-01   p_joint 2.172222e-04

Joint ci ratio: 1.399848e-01	ci left: 2.019708e-04	ci right 2.326353e-04	k: 783	n:3610000
Cons ci ratio: 1.960378e-03	ci left: 5.250124e-01	ci right 5.260429e-01	k: 1897155	n:3610000
KS ci ratio: 1.688337e-01	ci left: 1.367026e-04	ci right 1.621715e-04	k: 538	n:3610000
FOXK1   3610000 perm   5264 sec   (686 perm/sec)   p_kst 1.490305e-04   p_cons 5.255277e-01   p_joint 2.168975e-04

Joint ci ratio: 1.397177e-01	ci left: 2.022126e-04	ci right 2.328503e-04	k: 786	n:3620000
Cons ci ratio: 1.957631e-03	ci left: 5.250227e-01	ci right 5.260518e-01	k: 1902445	n:3620000
KS ci ratio: 1.686773e-01	ci left: 1.365895e-04	ci right 1.620114e-04	k: 539	n:3620000
FOXK1   3620000 perm   5291 sec   (684 perm/sec)   p_kst 1.488950e-04   p_cons 5.255373e-01   p_joint 2.171271e-04

Joint ci ratio: 1.395405e-01	ci left: 2.021873e-04	ci right 2.327791e-04	k: 788	n:3630000
Cons ci ratio: 1.955020e-03	ci left: 5.250013e-01	ci right 5.260290e-01	k: 1907620	n:3630000
KS ci ratio: 1.682107e-01	ci left: 1.370049e-04	ci right 1.624263e-04	k: 542	n:3630000
FOXK1   3630000 perm   5319 sec   (682 perm/sec)   p_kst 1.493113e-04   p_cons 5.255152e-01   p_joint 2.170799e-04

Joint ci ratio: 1.393640e-01	ci left: 2.021621e-04	ci right 2.327082e-04	k: 790	n:3640000
Cons ci ratio: 1.952274e-03	ci left: 5.250168e-01	ci right 5.260430e-01	k: 1912929	n:3640000
KS ci ratio: 1.679018e-01	ci left: 1.371548e-04	ci right 1.625526e-04	k: 544	n:3640000
FOXK1   3640000 perm   5346 sec   (681 perm/sec)   p_kst 1.494505e-04   p_cons 5.255299e-01   p_joint 2.170330e-04

Joint ci ratio: 1.391881e-01	ci left: 2.021371e-04	ci right 2.326376e-04	k: 792	n:3650000
Cons ci ratio: 1.949594e-03	ci left: 5.250185e-01	ci right 5.260434e-01	k: 1918188	n:3650000
KS ci ratio: 1.677479e-01	ci left: 1.370415e-04	ci right 1.623928e-04	k: 545	n:3650000
FOXK1   3650000 perm   5374 sec   (679 perm/sec)   p_kst 1.493151e-04   p_cons 5.255310e-01   p_joint 2.169863e-04

Joint ci ratio: 1.391005e-01	ci left: 2.018485e-04	ci right 2.322848e-04	k: 793	n:3660000
Cons ci ratio: 1.946845e-03	ci left: 5.250407e-01	ci right 5.260642e-01	k: 1923522	n:3660000
KS ci ratio: 1.677480e-01	ci left: 1.366671e-04	ci right 1.619491e-04	k: 545	n:3660000
FOXK1   3660000 perm   5401 sec   (678 perm/sec)   p_kst 1.489071e-04   p_cons 5.255525e-01   p_joint 2.166667e-04

Joint ci ratio: 1.389256e-01	ci left: 2.018245e-04	ci right 2.322157e-04	k: 795	n:3670000
Cons ci ratio: 1.944144e-03	ci left: 5.250535e-01	ci right 5.260756e-01	k: 1928822	n:3670000
KS ci ratio: 1.675946e-01	ci left: 1.365557e-04	ci right 1.617917e-04	k: 546	n:3670000
FOXK1   3670000 perm   5429 sec   (676 perm/sec)   p_kst 1.487738e-04   p_cons 5.255646e-01   p_joint 2.166213e-04

Joint ci ratio: 1.386646e-01	ci left: 2.020630e-04	ci right 2.324282e-04	k: 798	n:3680000
Cons ci ratio: 1.941498e-03	ci left: 5.250549e-01	ci right 5.260755e-01	k: 1934080	n:3680000
KS ci ratio: 1.672890e-01	ci left: 1.367054e-04	ci right 1.619183e-04	k: 548	n:3680000
FOXK1   3680000 perm   5457 sec   (674 perm/sec)   p_kst 1.489130e-04   p_cons 5.255652e-01   p_joint 2.168478e-04

Joint ci ratio: 1.400745e-01	ci left: 1.973305e-04	ci right 2.273112e-04	k: 782	n:3690000
Cons ci ratio: 1.938902e-03	ci left: 5.250462e-01	ci right 5.260654e-01	k: 1939301	n:3690000
KS ci ratio: 1.671369e-01	ci left: 1.365946e-04	ci right 1.617618e-04	k: 549	n:3690000
FOXK1   3690000 perm   5485 sec   (673 perm/sec)   p_kst 1.487805e-04   p_cons 5.255558e-01   p_joint 2.119241e-04

Joint ci ratio: 1.398069e-01	ci left: 1.975796e-04	ci right 2.275361e-04	k: 785	n:3700000
Cons ci ratio: 1.936255e-03	ci left: 5.250532e-01	ci right 5.260711e-01	k: 1944580	n:3700000
KS ci ratio: 1.668338e-01	ci left: 1.367433e-04	ci right 1.618877e-04	k: 551	n:3700000
FOXK1   3700000 perm   5512 sec   (671 perm/sec)   p_kst 1.489189e-04   p_cons 5.255622e-01   p_joint 2.121622e-04

Joint ci ratio: 1.394525e-01	ci left: 1.980875e-04	ci right 2.280386e-04	k: 789	n:3710000
Cons ci ratio: 1.933632e-03	ci left: 5.250570e-01	ci right 5.260735e-01	k: 1949847	n:3710000
KS ci ratio: 1.663823e-01	ci left: 1.371497e-04	ci right 1.622937e-04	k: 554	n:3710000
FOXK1   3710000 perm   5540 sec   (670 perm/sec)   p_kst 1.493261e-04   p_cons 5.255652e-01   p_joint 2.126685e-04

Joint ci ratio: 1.393643e-01	ci left: 1.978145e-04	ci right 2.277037e-04	k: 790	n:3720000
Cons ci ratio: 1.931079e-03	ci left: 5.250454e-01	ci right 5.260605e-01	k: 1955057	n:3720000
KS ci ratio: 1.663823e-01	ci left: 1.367810e-04	ci right 1.618574e-04	k: 554	n:3720000
FOXK1   3720000 perm   5569 sec   (668 perm/sec)   p_kst 1.489247e-04   p_cons 5.255530e-01   p_joint 2.123656e-04

Joint ci ratio: 1.392763e-01	ci left: 1.975429e-04	ci right 2.273707e-04	k: 791	n:3730000
Cons ci ratio: 1.928509e-03	ci left: 5.250408e-01	ci right 5.260546e-01	k: 1960293	n:3730000
KS ci ratio: 1.663823e-01	ci left: 1.364143e-04	ci right 1.614235e-04	k: 554	n:3730000
FOXK1   3730000 perm   5597 sec   (666 perm/sec)   p_kst 1.485255e-04   p_cons 5.255477e-01   p_joint 2.120643e-04

Joint ci ratio: 1.391885e-01	ci left: 1.972728e-04	ci right 2.270395e-04	k: 792	n:3740000
Cons ci ratio: 1.925903e-03	ci left: 5.250483e-01	ci right 5.260607e-01	k: 1965574	n:3740000
KS ci ratio: 1.660833e-01	ci left: 1.365621e-04	ci right 1.615488e-04	k: 556	n:3740000
FOXK1   3740000 perm   5625 sec   (665 perm/sec)   p_kst 1.486631e-04   p_cons 5.255545e-01   p_joint 2.117647e-04

Joint ci ratio: 1.389260e-01	ci left: 1.975189e-04	ci right 2.272618e-04	k: 795	n:3750000
Cons ci ratio: 1.923449e-03	ci left: 5.250190e-01	ci right 5.260300e-01	k: 1970717	n:3750000
KS ci ratio: 1.659345e-01	ci left: 1.364535e-04	ci right 1.613958e-04	k: 557	n:3750000
FOXK1   3750000 perm   5653 sec   (663 perm/sec)   p_kst 1.485333e-04   p_cons 5.255245e-01   p_joint 2.120000e-04

Joint ci ratio: 1.387518e-01	ci left: 1.975070e-04	ci right 2.272078e-04	k: 797	n:3760000
Cons ci ratio: 1.920824e-03	ci left: 5.250366e-01	ci right 5.260463e-01	k: 1976036	n:3760000
KS ci ratio: 1.654902e-01	ci left: 1.368554e-04	ci right 1.617975e-04	k: 560	n:3760000
FOXK1   3760000 perm   5681 sec   (662 perm/sec)   p_kst 1.489362e-04   p_cons 5.255415e-01   p_joint 2.119681e-04

Joint ci ratio: 1.386649e-01	ci left: 1.972392e-04	ci right 2.268796e-04	k: 798	n:3770000
Cons ci ratio: 1.918270e-03	ci left: 5.250385e-01	ci right 5.260469e-01	k: 1981296	n:3770000
KS ci ratio: 1.654902e-01	ci left: 1.364923e-04	ci right 1.613683e-04	k: 560	n:3770000
FOXK1   3770000 perm   5709 sec   (660 perm/sec)   p_kst 1.485411e-04   p_cons 5.255427e-01   p_joint 2.116711e-04

Joint ci ratio: 1.383191e-01	ci left: 1.977389e-04	ci right 2.273742e-04	k: 802	n:3780000
Cons ci ratio: 1.915619e-03	ci left: 5.250684e-01	ci right 5.260755e-01	k: 1986662	n:3780000
KS ci ratio: 1.649033e-01	ci left: 1.371457e-04	ci right 1.620433e-04	k: 564	n:3780000
FOXK1   3780000 perm   5738 sec   (659 perm/sec)   p_kst 1.492063e-04   p_cons 5.255720e-01   p_joint 2.121693e-04

Joint ci ratio: 1.382331e-01	ci left: 1.974719e-04	ci right 2.270472e-04	k: 803	n:3790000
Cons ci ratio: 1.913060e-03	ci left: 5.250768e-01	ci right 5.260825e-01	k: 1991947	n:3790000
KS ci ratio: 1.646122e-01	ci left: 1.372898e-04	ci right 1.621652e-04	k: 566	n:3790000
FOXK1   3790000 perm   5767 sec   (657 perm/sec)   p_kst 1.493404e-04   p_cons 5.255797e-01   p_joint 2.118734e-04

Joint ci ratio: 1.380614e-01	ci left: 1.974603e-04	ci right 2.269942e-04	k: 805	n:3800000
Cons ci ratio: 1.910547e-03	ci left: 5.250759e-01	ci right 5.260803e-01	k: 1997197	n:3800000
KS ci ratio: 1.644672e-01	ci left: 1.371808e-04	ci right 1.620124e-04	k: 567	n:3800000
FOXK1   3800000 perm   5796 sec   (656 perm/sec)   p_kst 1.492105e-04   p_cons 5.255782e-01   p_joint 2.118421e-04

Joint ci ratio: 1.379759e-01	ci left: 1.971955e-04	ci right 2.266700e-04	k: 806	n:3810000
Cons ci ratio: 1.908114e-03	ci left: 5.250567e-01	ci right 5.260598e-01	k: 2002377	n:3810000
KS ci ratio: 1.643227e-01	ci left: 1.370724e-04	ci right 1.618605e-04	k: 568	n:3810000
FOXK1   3810000 perm   5825 sec   (654 perm/sec)   p_kst 1.490814e-04   p_cons 5.255583e-01   p_joint 2.115486e-04

Joint ci ratio: 1.377201e-01	ci left: 1.974375e-04	ci right 2.268890e-04	k: 809	n:3820000
Cons ci ratio: 1.905621e-03	ci left: 5.250559e-01	ci right 5.260577e-01	k: 2007627	n:3820000
KS ci ratio: 1.641785e-01	ci left: 1.369646e-04	ci right 1.617093e-04	k: 569	n:3820000
FOXK1   3820000 perm   5854 sec   (653 perm/sec)   p_kst 1.489529e-04   p_cons 5.255568e-01   p_joint 2.117801e-04

Joint ci ratio: 1.374658e-01	ci left: 1.976783e-04	ci right 2.271068e-04	k: 812	n:3830000
Cons ci ratio: 1.903080e-03	ci left: 5.250700e-01	ci right 5.260704e-01	k: 2012934	n:3830000
KS ci ratio: 1.640346e-01	ci left: 1.368574e-04	ci right 1.615589e-04	k: 570	n:3830000
FOXK1   3830000 perm   5883 sec   (651 perm/sec)   p_kst 1.488251e-04   p_cons 5.255702e-01   p_joint 2.120104e-04

Joint ci ratio: 1.372128e-01	ci left: 1.979180e-04	ci right 2.273235e-04	k: 815	n:3840000
Cons ci ratio: 1.900644e-03	ci left: 5.250593e-01	ci right 5.260584e-01	k: 2018146	n:3840000
KS ci ratio: 1.636054e-01	ci left: 1.372502e-04	ci right 1.619514e-04	k: 573	n:3840000
FOXK1   3840000 perm   5912 sec   (650 perm/sec)   p_kst 1.492187e-04   p_cons 5.255589e-01   p_joint 2.122396e-04

Joint ci ratio: 1.369613e-01	ci left: 1.981564e-04	ci right 2.275390e-04	k: 818	n:3850000
Cons ci ratio: 1.898164e-03	ci left: 5.250626e-01	ci right 5.260605e-01	k: 2023412	n:3850000
KS ci ratio: 1.633211e-01	ci left: 1.373920e-04	ci right 1.620714e-04	k: 575	n:3850000
FOXK1   3850000 perm   5941 sec   (648 perm/sec)   p_kst 1.493506e-04   p_cons 5.255616e-01   p_joint 2.124675e-04

Joint ci ratio: 1.385785e-01	ci left: 1.928904e-04	ci right 2.218577e-04	k: 799	n:3860000
Cons ci ratio: 1.895651e-03	ci left: 5.250771e-01	ci right 5.260736e-01	k: 2028721	n:3860000
KS ci ratio: 1.633211e-01	ci left: 1.370360e-04	ci right 1.616516e-04	k: 575	n:3860000
FOXK1   3860000 perm   5970 sec   (647 perm/sec)   p_kst 1.489637e-04   p_cons 5.255754e-01   p_joint 2.069948e-04

Joint ci ratio: 1.384920e-01	ci left: 1.926414e-04	ci right 2.215518e-04	k: 800	n:3870000
Cons ci ratio: 1.893209e-03	ci left: 5.250755e-01	ci right 5.260707e-01	k: 2033968	n:3870000
KS ci ratio: 1.633212e-01	ci left: 1.366819e-04	ci right 1.612339e-04	k: 575	n:3870000
FOXK1   3870000 perm   5999 sec   (645 perm/sec)   p_kst 1.485788e-04   p_cons 5.255731e-01   p_joint 2.067183e-04

Joint ci ratio: 1.265677e-01	ci left: 2.315194e-04	ci right 2.630487e-04	k: 958	n:3880000
Cons ci ratio: 1.890844e-03	ci left: 5.250558e-01	ci right 5.260498e-01	k: 2039145	n:3880000
KS ci ratio: 1.628975e-01	ci left: 1.370713e-04	ci right 1.616230e-04	k: 578	n:3880000
FOXK1   3880000 perm   6028 sec   (644 perm/sec)   p_kst 1.489691e-04   p_cons 5.255528e-01   p_joint 2.469072e-04

Joint ci ratio: 1.263702e-01	ci left: 2.316711e-04	ci right 2.631681e-04	k: 961	n:3890000
Cons ci ratio: 1.888319e-03	ci left: 5.250813e-01	ci right 5.260740e-01	k: 2044497	n:3890000
KS ci ratio: 1.624771e-01	ci left: 1.374587e-04	ci right 1.620101e-04	k: 581	n:3890000
FOXK1   3890000 perm   6058 sec   (642 perm/sec)   p_kst 1.493573e-04   p_cons 5.255776e-01   p_joint 2.470437e-04

Joint ci ratio: 1.263046e-01	ci left: 2.313254e-04	ci right 2.627578e-04	k: 962	n:3900000
Cons ci ratio: 1.885851e-03	ci left: 5.250938e-01	ci right 5.260852e-01	k: 2049799	n:3900000
KS ci ratio: 1.624771e-01	ci left: 1.371063e-04	ci right 1.615947e-04	k: 581	n:3900000
FOXK1   3900000 perm   6087 sec   (641 perm/sec)   p_kst 1.489744e-04   p_cons 5.255895e-01   p_joint 2.466667e-04

Joint ci ratio: 1.263047e-01	ci left: 2.307337e-04	ci right 2.620858e-04	k: 962	n:3910000
Cons ci ratio: 1.883454e-03	ci left: 5.250901e-01	ci right 5.260802e-01	k: 2055038	n:3910000
KS ci ratio: 1.624771e-01	ci left: 1.367556e-04	ci right 1.611814e-04	k: 581	n:3910000
FOXK1   3910000 perm   6117 sec   (639 perm/sec)   p_kst 1.485934e-04   p_cons 5.255852e-01   p_joint 2.460358e-04

Joint ci ratio: 1.263047e-01	ci left: 2.301451e-04	ci right 2.614172e-04	k: 962	n:3920000
Cons ci ratio: 1.881048e-03	ci left: 5.250913e-01	ci right 5.260801e-01	k: 2060296	n:3920000
KS ci ratio: 1.624771e-01	ci left: 1.364067e-04	ci right 1.607703e-04	k: 581	n:3920000
FOXK1   3920000 perm   6146 sec   (638 perm/sec)   p_kst 1.482143e-04   p_cons 5.255857e-01   p_joint 2.454082e-04

Joint ci ratio: 1.237599e-01	ci left: 2.394194e-04	ci right 2.712482e-04	k: 1002	n:3930000
Cons ci ratio: 1.878589e-03	ci left: 5.251090e-01	ci right 5.260966e-01	k: 2065619	n:3930000
KS ci ratio: 1.620600e-01	ci left: 1.367920e-04	ci right 1.611555e-04	k: 584	n:3930000
FOXK1   3930000 perm   6176 sec   (636 perm/sec)   p_kst 1.486005e-04   p_cons 5.256028e-01   p_joint 2.549618e-04

Joint ci ratio: 1.233914e-01	ci left: 2.402875e-04	ci right 2.721296e-04	k: 1008	n:3940000
Cons ci ratio: 1.876228e-03	ci left: 5.251032e-01	ci right 5.260896e-01	k: 2070850	n:3940000
KS ci ratio: 1.615087e-01	ci left: 1.374189e-04	ci right 1.618028e-04	k: 588	n:3940000
FOXK1   3940000 perm   6206 sec   (635 perm/sec)   p_kst 1.492386e-04   p_cons 5.255964e-01   p_joint 2.558376e-04

Joint ci ratio: 1.232693e-01	ci left: 2.401699e-04	ci right 2.719626e-04	k: 1010	n:3950000
Cons ci ratio: 1.873890e-03	ci left: 5.250935e-01	ci right 5.260786e-01	k: 2076065	n:3950000
KS ci ratio: 1.615087e-01	ci left: 1.370711e-04	ci right 1.613932e-04	k: 588	n:3950000
FOXK1   3950000 perm   6235 sec   (633 perm/sec)   p_kst 1.488608e-04   p_cons 5.255861e-01   p_joint 2.556962e-04

Joint ci ratio: 1.230868e-01	ci left: 2.402976e-04	ci right 2.720568e-04	k: 1013	n:3960000
Cons ci ratio: 1.871547e-03	ci left: 5.250876e-01	ci right 5.260715e-01	k: 2081295	n:3960000
KS ci ratio: 1.610989e-01	ci left: 1.374519e-04	ci right 1.617737e-04	k: 591	n:3960000
FOXK1   3960000 perm   6265 sec   (632 perm/sec)   p_kst 1.492424e-04   p_cons 5.255795e-01   p_joint 2.558081e-04

Joint ci ratio: 1.229656e-01	ci left: 2.401806e-04	ci right 2.718908e-04	k: 1015	n:3970000
Cons ci ratio: 1.869179e-03	ci left: 5.250908e-01	ci right 5.260734e-01	k: 2086561	n:3970000
KS ci ratio: 1.608275e-01	ci left: 1.375892e-04	ci right 1.618903e-04	k: 593	n:3970000
FOXK1   3970000 perm   6295 sec   (631 perm/sec)   p_kst 1.493703e-04   p_cons 5.255821e-01   p_joint 2.556675e-04

Joint ci ratio: 1.227844e-01	ci left: 2.403078e-04	ci right 2.719845e-04	k: 1018	n:3980000
Cons ci ratio: 1.866845e-03	ci left: 5.250872e-01	ci right 5.260686e-01	k: 2091800	n:3980000
KS ci ratio: 1.605574e-01	ci left: 1.377258e-04	ci right 1.620062e-04	k: 595	n:3980000
FOXK1   3980000 perm   6326 sec   (629 perm/sec)   p_kst 1.494975e-04   p_cons 5.255779e-01   p_joint 2.557789e-04

Joint ci ratio: 1.227243e-01	ci left: 2.399484e-04	ci right 2.715612e-04	k: 1019	n:3990000
Cons ci ratio: 1.864517e-03	ci left: 5.250843e-01	ci right 5.260645e-01	k: 2097042	n:3990000
KS ci ratio: 1.604229e-01	ci left: 1.376212e-04	ci right 1.618609e-04	k: 596	n:3990000
FOXK1   3990000 perm   6355 sec   (628 perm/sec)   p_kst 1.493734e-04   p_cons 5.255744e-01   p_joint 2.553885e-04

Joint ci ratio: 1.226041e-01	ci left: 2.398332e-04	ci right 2.713976e-04	k: 1021	n:4000000
Cons ci ratio: 1.862248e-03	ci left: 5.250680e-01	ci right 5.260470e-01	k: 2102230	n:4000000
KS ci ratio: 1.601548e-01	ci left: 1.377571e-04	ci right 1.619763e-04	k: 598	n:4000000
FOXK1   4000000 perm   6385 sec   (626 perm/sec)   p_kst 1.495000e-04   p_cons 5.255575e-01   p_joint 2.552500e-04

Joint ci ratio: 1.224843e-01	ci left: 2.397186e-04	ci right 2.712349e-04	k: 1023	n:4010000
Cons ci ratio: 1.859964e-03	ci left: 5.250582e-01	ci right 5.260360e-01	k: 2107444	n:4010000
KS ci ratio: 1.598881e-01	ci left: 1.378923e-04	ci right 1.620910e-04	k: 600	n:4010000
FOXK1   4010000 perm   6415 sec   (625 perm/sec)   p_kst 1.496259e-04   p_cons 5.255471e-01   p_joint 2.551122e-04

Joint ci ratio: 1.221864e-01	ci left: 2.403280e-04	ci right 2.718420e-04	k: 1028	n:4020000
Cons ci ratio: 1.857709e-03	ci left: 5.250426e-01	ci right 5.260191e-01	k: 2112634	n:4020000
KS ci ratio: 1.594905e-01	ci left: 1.382657e-04	ci right 1.624639e-04	k: 603	n:4020000
FOXK1   4020000 perm   6445 sec   (624 perm/sec)   p_kst 1.500000e-04   p_cons 5.255308e-01   p_joint 2.557214e-04

Joint ci ratio: 1.220678e-01	ci left: 2.402128e-04	ci right 2.716789e-04	k: 1030	n:4030000
Cons ci ratio: 1.855384e-03	ci left: 5.250483e-01	ci right 5.260236e-01	k: 2117910	n:4030000
KS ci ratio: 1.592271e-01	ci left: 1.383991e-04	ci right 1.625768e-04	k: 605	n:4030000
FOXK1   4030000 perm   6476 sec   (622 perm/sec)   p_kst 1.501241e-04   p_cons 5.255360e-01   p_joint 2.555831e-04

Joint ci ratio: 1.220087e-01	ci left: 2.398581e-04	ci right 2.712615e-04	k: 1031	n:4040000
Cons ci ratio: 1.853046e-03	ci left: 5.250597e-01	ci right 5.260338e-01	k: 2123209	n:4040000
KS ci ratio: 1.590959e-01	ci left: 1.382942e-04	ci right 1.624318e-04	k: 606	n:4040000
FOXK1   4040000 perm   6505 sec   (621 perm/sec)   p_kst 1.500000e-04   p_cons 5.255468e-01   p_joint 2.551980e-04

Joint ci ratio: 1.217729e-01	ci left: 2.402234e-04	ci right 2.716094e-04	k: 1035	n:4050000
Cons ci ratio: 1.850762e-03	ci left: 5.250590e-01	ci right 5.260319e-01	k: 2128459	n:4050000
KS ci ratio: 1.589650e-01	ci left: 1.381898e-04	ci right 1.622874e-04	k: 607	n:4050000
FOXK1   4050000 perm   6535 sec   (620 perm/sec)   p_kst 1.498765e-04   p_cons 5.255454e-01   p_joint 2.555556e-04

Joint ci ratio: 1.217142e-01	ci left: 2.398706e-04	ci right 2.711942e-04	k: 1036	n:4060000
Cons ci ratio: 1.848438e-03	ci left: 5.250713e-01	ci right 5.260430e-01	k: 2133762	n:4060000
KS ci ratio: 1.588345e-01	ci left: 1.380860e-04	ci right 1.621438e-04	k: 608	n:4060000
FOXK1   4060000 perm   6565 sec   (618 perm/sec)   p_kst 1.497537e-04   p_cons 5.255571e-01   p_joint 2.551724e-04

Joint ci ratio: 1.215385e-01	ci left: 2.399959e-04	ci right 2.712874e-04	k: 1039	n:4070000
Cons ci ratio: 1.846191e-03	ci left: 5.250651e-01	ci right 5.260356e-01	k: 2138990	n:4070000
KS ci ratio: 1.585743e-01	ci left: 1.382186e-04	ci right 1.622563e-04	k: 610	n:4070000
FOXK1   4070000 perm   6596 sec   (617 perm/sec)   p_kst 1.498771e-04   p_cons 5.255504e-01   p_joint 2.552826e-04

Joint ci ratio: 1.214218e-01	ci left: 2.398830e-04	ci right 2.711276e-04	k: 1041	n:4080000
Cons ci ratio: 1.843925e-03	ci left: 5.250663e-01	ci right 5.260356e-01	k: 2144248	n:4080000
KS ci ratio: 1.584447e-01	ci left: 1.381152e-04	ci right 1.621134e-04	k: 611	n:4080000
FOXK1   4080000 perm   6626 sec   (616 perm/sec)   p_kst 1.497549e-04   p_cons 5.255510e-01   p_joint 2.551471e-04

Joint ci ratio: 1.211315e-01	ci left: 2.404819e-04	ci right 2.717243e-04	k: 1046	n:4090000
Cons ci ratio: 1.841756e-03	ci left: 5.250433e-01	ci right 5.260114e-01	k: 2149407	n:4090000
KS ci ratio: 1.578013e-01	ci left: 1.389516e-04	ci right 1.629879e-04	k: 616	n:4090000
FOXK1   4090000 perm   6657 sec   (614 perm/sec)   p_kst 1.506112e-04   p_cons 5.255274e-01   p_joint 2.557457e-04

Joint ci ratio: 1.209583e-01	ci left: 2.406049e-04	ci right 2.718154e-04	k: 1049	n:4100000
Cons ci ratio: 1.839438e-03	ci left: 5.250631e-01	ci right 5.260300e-01	k: 2154741	n:4100000
KS ci ratio: 1.574191e-01	ci left: 1.393156e-04	ci right 1.633509e-04	k: 619	n:4100000
FOXK1   4100000 perm   6688 sec   (613 perm/sec)   p_kst 1.509756e-04   p_cons 5.255466e-01   p_joint 2.558537e-04

Joint ci ratio: 1.207859e-01	ci left: 2.407273e-04	ci right 2.719060e-04	k: 1052	n:4110000
Cons ci ratio: 1.837163e-03	ci left: 5.250736e-01	ci right 5.260393e-01	k: 2160037	n:4110000
KS ci ratio: 1.571658e-01	ci left: 1.394441e-04	ci right 1.634592e-04	k: 621	n:4110000
FOXK1   4110000 perm   6719 sec   (612 perm/sec)   p_kst 1.510949e-04   p_cons 5.255564e-01   p_joint 2.559611e-04

Joint ci ratio: 1.206142e-01	ci left: 2.408492e-04	ci right 2.719962e-04	k: 1055	n:4120000
Cons ci ratio: 1.834968e-03	ci left: 5.250643e-01	ci right 5.260289e-01	k: 2165252	n:4120000
KS ci ratio: 1.570396e-01	ci left: 1.393388e-04	ci right 1.633147e-04	k: 622	n:4120000
FOXK1   4120000 perm   6750 sec   (610 perm/sec)   p_kst 1.509709e-04   p_cons 5.255466e-01   p_joint 2.560680e-04

Joint ci ratio: 1.204432e-01	ci left: 2.409705e-04	ci right 2.720859e-04	k: 1058	n:4130000
Cons ci ratio: 1.832691e-03	ci left: 5.250795e-01	ci right 5.260429e-01	k: 2170568	n:4130000
KS ci ratio: 1.567881e-01	ci left: 1.394667e-04	ci right 1.634225e-04	k: 624	n:4130000
FOXK1   4130000 perm   6781 sec   (609 perm/sec)   p_kst 1.510896e-04   p_cons 5.255613e-01   p_joint 2.561743e-04

Joint ci ratio: 1.208434e-01	ci left: 2.387487e-04	ci right 2.696868e-04	k: 1051	n:4140000
Cons ci ratio: 1.830431e-03	ci left: 5.250925e-01	ci right 5.260548e-01	k: 2175875	n:4140000
KS ci ratio: 1.567881e-01	ci left: 1.391298e-04	ci right 1.630278e-04	k: 624	n:4140000
FOXK1   4140000 perm   6812 sec   (608 perm/sec)   p_kst 1.507246e-04   p_cons 5.255737e-01   p_joint 2.538647e-04

Joint ci ratio: 1.206715e-01	ci left: 2.388744e-04	ci right 2.697817e-04	k: 1054	n:4150000
Cons ci ratio: 1.828179e-03	ci left: 5.251055e-01	ci right 5.260666e-01	k: 2181182	n:4150000
KS ci ratio: 1.565379e-01	ci left: 1.392576e-04	ci right 1.631358e-04	k: 626	n:4150000
FOXK1   4150000 perm   6843 sec   (606 perm/sec)   p_kst 1.508434e-04   p_cons 5.255860e-01   p_joint 2.539759e-04

Joint ci ratio: 1.204433e-01	ci left: 2.392327e-04	ci right 2.701237e-04	k: 1058	n:4160000
Cons ci ratio: 1.826043e-03	ci left: 5.250890e-01	ci right 5.260489e-01	k: 2186367	n:4160000
KS ci ratio: 1.561647e-01	ci left: 1.396158e-04	ci right 1.634930e-04	k: 629	n:4160000
FOXK1   4160000 perm   6873 sec   (605 perm/sec)   p_kst 1.512019e-04   p_cons 5.255690e-01   p_joint 2.543269e-04

Joint ci ratio: 1.202165e-01	ci left: 2.395894e-04	ci right 2.704640e-04	k: 1062	n:4170000
Cons ci ratio: 1.823802e-03	ci left: 5.251031e-01	ci right 5.260619e-01	k: 2191679	n:4170000
KS ci ratio: 1.559174e-01	ci left: 1.397418e-04	ci right 1.635992e-04	k: 631	n:4170000
FOXK1   4170000 perm   6905 sec   (604 perm/sec)   p_kst 1.513189e-04   p_cons 5.255825e-01   p_joint 2.546763e-04

Joint ci ratio: 1.213639e-01	ci left: 2.343761e-04	ci right 2.648878e-04	k: 1042	n:4180000
Cons ci ratio: 1.821652e-03	ci left: 5.250948e-01	ci right 5.260525e-01	k: 2196898	n:4180000
KS ci ratio: 1.559174e-01	ci left: 1.394075e-04	ci right 1.632078e-04	k: 631	n:4180000
FOXK1   4180000 perm   6935 sec   (603 perm/sec)   p_kst 1.509569e-04   p_cons 5.255737e-01   p_joint 2.492823e-04

Joint ci ratio: 1.211898e-01	ci left: 2.345110e-04	ci right 2.649933e-04	k: 1045	n:4190000
Cons ci ratio: 1.819450e-03	ci left: 5.251026e-01	ci right 5.260591e-01	k: 2202184	n:4190000
KS ci ratio: 1.557942e-01	ci left: 1.393042e-04	ci right 1.630663e-04	k: 632	n:4190000
FOXK1   4190000 perm   6967 sec   (601 perm/sec)   p_kst 1.508353e-04   p_cons 5.255809e-01   p_joint 2.494033e-04

Joint ci ratio: 1.211319e-01	ci left: 2.341835e-04	ci right 2.646077e-04	k: 1046	n:4200000
Cons ci ratio: 1.817241e-03	ci left: 5.251147e-01	ci right 5.260700e-01	k: 2207488	n:4200000
KS ci ratio: 1.556713e-01	ci left: 1.392013e-04	ci right 1.629254e-04	k: 633	n:4200000
FOXK1   4200000 perm   6998 sec   (600 perm/sec)   p_kst 1.507143e-04   p_cons 5.255924e-01   p_joint 2.490476e-04

Joint ci ratio: 1.210164e-01	ci left: 2.340879e-04	ci right 2.644686e-04	k: 1048	n:4210000
Cons ci ratio: 1.815065e-03	ci left: 5.251198e-01	ci right 5.260740e-01	k: 2212763	n:4210000
KS ci ratio: 1.554264e-01	ci left: 1.393272e-04	ci right 1.630319e-04	k: 635	n:4210000
FOXK1   4210000 perm   7029 sec   (599 perm/sec)   p_kst 1.508314e-04   p_cons 5.255969e-01   p_joint 2.489311e-04

Joint ci ratio: 1.210164e-01	ci left: 2.335332e-04	ci right 2.638419e-04	k: 1048	n:4220000
Cons ci ratio: 1.812935e-03	ci left: 5.251144e-01	ci right 5.260675e-01	k: 2217994	n:4220000
KS ci ratio: 1.554264e-01	ci left: 1.389971e-04	ci right 1.626456e-04	k: 635	n:4220000
FOXK1   4220000 perm   7061 sec   (598 perm/sec)   p_kst 1.504739e-04   p_cons 5.255910e-01   p_joint 2.483412e-04

Joint ci ratio: 1.208437e-01	ci left: 2.336689e-04	ci right 2.639489e-04	k: 1051	n:4230000
Cons ci ratio: 1.810839e-03	ci left: 5.251018e-01	ci right 5.260537e-01	k: 2223194	n:4230000
KS ci ratio: 1.551826e-01	ci left: 1.391229e-04	ci right 1.627523e-04	k: 637	n:4230000
FOXK1   4230000 perm   7092 sec   (596 perm/sec)   p_kst 1.505910e-04   p_cons 5.255778e-01   p_joint 2.484634e-04

Joint ci ratio: 1.207290e-01	ci left: 2.335752e-04	ci right 2.638123e-04	k: 1053	n:4240000
Cons ci ratio: 1.808610e-03	ci left: 5.251276e-01	ci right 5.260785e-01	k: 2228557	n:4240000
KS ci ratio: 1.550611e-01	ci left: 1.390215e-04	ci right 1.626134e-04	k: 638	n:4240000
FOXK1   4240000 perm   7124 sec   (595 perm/sec)   p_kst 1.504717e-04   p_cons 5.256031e-01   p_joint 2.483491e-04

Joint ci ratio: 1.206718e-01	ci left: 2.332538e-04	ci right 2.634339e-04	k: 1054	n:4250000
Cons ci ratio: 1.806425e-03	ci left: 5.251437e-01	ci right 5.260934e-01	k: 2233879	n:4250000
KS ci ratio: 1.549399e-01	ci left: 1.389205e-04	ci right 1.624752e-04	k: 639	n:4250000
FOXK1   4250000 perm   7156 sec   (594 perm/sec)   p_kst 1.503529e-04   p_cons 5.256186e-01   p_joint 2.480000e-04

Joint ci ratio: 1.205576e-01	ci left: 2.331616e-04	ci right 2.632992e-04	k: 1056	n:4260000
Cons ci ratio: 1.804351e-03	ci left: 5.251311e-01	ci right 5.260797e-01	k: 2239079	n:4260000
KS ci ratio: 1.546984e-01	ci left: 1.390457e-04	ci right 1.625815e-04	k: 641	n:4260000
FOXK1   4260000 perm   7188 sec   (593 perm/sec)   p_kst 1.504695e-04   p_cons 5.256054e-01   p_joint 2.478873e-04

Joint ci ratio: 1.201603e-01	ci left: 2.342055e-04	ci right 2.643712e-04	k: 1063	n:4270000
Cons ci ratio: 1.802252e-03	ci left: 5.251276e-01	ci right 5.260751e-01	k: 2244318	n:4270000
KS ci ratio: 1.543382e-01	ci left: 1.393955e-04	ci right 1.629304e-04	k: 644	n:4270000
FOXK1   4270000 perm   7220 sec   (591 perm/sec)   p_kst 1.508197e-04   p_cons 5.256014e-01   p_joint 2.489461e-04

Joint ci ratio: 1.209590e-01	ci left: 2.304859e-04	ci right 2.603840e-04	k: 1049	n:4280000
Cons ci ratio: 1.800149e-03	ci left: 5.251270e-01	ci right 5.260734e-01	k: 2249569	n:4280000
KS ci ratio: 1.540994e-01	ci left: 1.395191e-04	ci right 1.630351e-04	k: 646	n:4280000
FOXK1   4280000 perm   7251 sec   (590 perm/sec)   p_kst 1.509346e-04   p_cons 5.256002e-01   p_joint 2.450935e-04

Joint ci ratio: 1.209014e-01	ci left: 2.301747e-04	ci right 2.600172e-04	k: 1050	n:4290000
Cons ci ratio: 1.797964e-03	ci left: 5.251514e-01	ci right 5.260966e-01	k: 2254927	n:4290000
KS ci ratio: 1.540995e-01	ci left: 1.391939e-04	ci right 1.626550e-04	k: 646	n:4290000
FOXK1   4290000 perm   7283 sec   (589 perm/sec)   p_kst 1.505828e-04   p_cons 5.256240e-01   p_joint 2.447552e-04

Joint ci ratio: 1.207292e-01	ci left: 2.303160e-04	ci right 2.601312e-04	k: 1053	n:4300000
Cons ci ratio: 1.795859e-03	ci left: 5.251556e-01	ci right 5.260997e-01	k: 2260199	n:4300000
KS ci ratio: 1.539805e-01	ci left: 1.390937e-04	ci right 1.625183e-04	k: 647	n:4300000
FOXK1   4300000 perm   7315 sec   (588 perm/sec)   p_kst 1.504651e-04   p_cons 5.256277e-01   p_joint 2.448837e-04

Joint ci ratio: 1.204439e-01	ci left: 2.309067e-04	ci right 2.607227e-04	k: 1058	n:4310000
Cons ci ratio: 1.793770e-03	ci left: 5.251574e-01	ci right 5.261005e-01	k: 2265461	n:4310000
KS ci ratio: 1.533898e-01	ci left: 1.398865e-04	ci right 1.633459e-04	k: 652	n:4310000
FOXK1   4310000 perm   7347 sec   (587 perm/sec)   p_kst 1.512761e-04   p_cons 5.256290e-01   p_joint 2.454756e-04

Joint ci ratio: 1.204439e-01	ci left: 2.303722e-04	ci right 2.601192e-04	k: 1058	n:4320000
Cons ci ratio: 1.791718e-03	ci left: 5.251508e-01	ci right 5.260927e-01	k: 2270686	n:4320000
KS ci ratio: 1.532725e-01	ci left: 1.397853e-04	ci right 1.632081e-04	k: 653	n:4320000
FOXK1   4320000 perm   7380 sec   (585 perm/sec)   p_kst 1.511574e-04   p_cons 5.256218e-01   p_joint 2.449074e-04

Joint ci ratio: 1.203303e-01	ci left: 2.302881e-04	ci right 2.599943e-04	k: 1060	n:4330000
Cons ci ratio: 1.789656e-03	ci left: 5.251492e-01	ci right 5.260901e-01	k: 2275933	n:4330000
KS ci ratio: 1.532725e-01	ci left: 1.394625e-04	ci right 1.628312e-04	k: 653	n:4330000
FOXK1   4330000 perm   7413 sec   (584 perm/sec)   p_kst 1.508083e-04   p_cons 5.256196e-01   p_joint 2.448037e-04

Joint ci ratio: 1.201041e-01	ci left: 2.306515e-04	ci right 2.603446e-04	k: 1064	n:4340000
Cons ci ratio: 1.787591e-03	ci left: 5.251501e-01	ci right 5.260899e-01	k: 2281191	n:4340000
KS ci ratio: 1.530387e-01	ci left: 1.395843e-04	ci right 1.629345e-04	k: 655	n:4340000
FOXK1   4340000 perm   7445 sec   (583 perm/sec)   p_kst 1.509217e-04   p_cons 5.256200e-01   p_joint 2.451613e-04

Joint ci ratio: 1.198231e-01	ci left: 2.312362e-04	ci right 2.609300e-04	k: 1069	n:4350000
Cons ci ratio: 1.785488e-03	ci left: 5.251640e-01	ci right 5.261027e-01	k: 2286505	n:4350000
KS ci ratio: 1.525742e-01	ci left: 1.401478e-04	ci right 1.635146e-04	k: 659	n:4350000
FOXK1   4350000 perm   7477 sec   (582 perm/sec)   p_kst 1.514943e-04   p_cons 5.256333e-01   p_joint 2.457471e-04

Joint ci ratio: 1.196555e-01	ci left: 2.313733e-04	ci right 2.610402e-04	k: 1072	n:4360000
Cons ci ratio: 1.783462e-03	ci left: 5.251580e-01	ci right 5.260956e-01	k: 2291733	n:4360000
KS ci ratio: 1.522286e-01	ci left: 1.404882e-04	ci right 1.638538e-04	k: 662	n:4360000
FOXK1   4360000 perm   7509 sec   (581 perm/sec)   p_kst 1.518349e-04   p_cons 5.256268e-01   p_joint 2.458716e-04

Joint ci ratio: 1.194331e-01	ci left: 2.317318e-04	ci right 2.613855e-04	k: 1076	n:4370000
Cons ci ratio: 1.781445e-03	ci left: 5.251518e-01	ci right 5.260884e-01	k: 2296960	n:4370000
KS ci ratio: 1.518853e-01	ci left: 1.408271e-04	ci right 1.641915e-04	k: 665	n:4370000
FOXK1   4370000 perm   7542 sec   (579 perm/sec)   p_kst 1.521739e-04   p_cons 5.256201e-01   p_joint 2.462243e-04

Joint ci ratio: 1.192671e-01	ci left: 2.318672e-04	ci right 2.614941e-04	k: 1079	n:4380000
Cons ci ratio: 1.779396e-03	ci left: 5.251562e-01	ci right 5.260917e-01	k: 2302233	n:4380000
KS ci ratio: 1.515444e-01	ci left: 1.411645e-04	ci right 1.645275e-04	k: 668	n:4380000
FOXK1   4380000 perm   7575 sec   (578 perm/sec)   p_kst 1.525114e-04   p_cons 5.256240e-01   p_joint 2.463470e-04

Joint ci ratio: 1.192119e-01	ci left: 2.315600e-04	ci right 2.611330e-04	k: 1080	n:4390000
Cons ci ratio: 1.777320e-03	ci left: 5.251704e-01	ci right 5.261048e-01	k: 2307549	n:4390000
KS ci ratio: 1.514312e-01	ci left: 1.410621e-04	ci right 1.643892e-04	k: 669	n:4390000
FOXK1   4390000 perm   7608 sec   (577 perm/sec)   p_kst 1.523918e-04   p_cons 5.256376e-01   p_joint 2.460137e-04

Joint ci ratio: 1.190468e-01	ci left: 2.316953e-04	ci right 2.612417e-04	k: 1083	n:4400000
Cons ci ratio: 1.775271e-03	ci left: 5.251788e-01	ci right 5.261121e-01	k: 2312840	n:4400000
KS ci ratio: 1.514313e-01	ci left: 1.407415e-04	ci right 1.640156e-04	k: 669	n:4400000
FOXK1   4400000 perm   7641 sec   (576 perm/sec)   p_kst 1.520455e-04   p_cons 5.256455e-01   p_joint 2.461364e-04

Joint ci ratio: 1.188824e-01	ci left: 2.318299e-04	ci right 2.613498e-04	k: 1086	n:4410000
Cons ci ratio: 1.773357e-03	ci left: 5.251511e-01	ci right 5.260834e-01	k: 2317972	n:4410000
KS ci ratio: 1.510933e-01	ci left: 1.410769e-04	ci right 1.643496e-04	k: 672	n:4410000
FOXK1   4410000 perm   7674 sec   (575 perm/sec)   p_kst 1.523810e-04   p_cons 5.256172e-01   p_joint 2.462585e-04

Joint ci ratio: 1.186099e-01	ci left: 2.324030e-04	ci right 2.619233e-04	k: 1091	n:4420000
Cons ci ratio: 1.771369e-03	ci left: 5.251463e-01	ci right 5.260776e-01	k: 2323205	n:4420000
KS ci ratio: 1.509812e-01	ci left: 1.409754e-04	ci right 1.642126e-04	k: 673	n:4420000
FOXK1   4420000 perm   7707 sec   (574 perm/sec)   p_kst 1.522624e-04   p_cons 5.256120e-01   p_joint 2.468326e-04

Joint ci ratio: 1.184473e-01	ci left: 2.325355e-04	ci right 2.620293e-04	k: 1094	n:4430000
Cons ci ratio: 1.769396e-03	ci left: 5.251392e-01	ci right 5.260694e-01	k: 2328427	n:4430000
KS ci ratio: 1.508694e-01	ci left: 1.408744e-04	ci right 1.640762e-04	k: 674	n:4430000
FOXK1   4430000 perm   7740 sec   (572 perm/sec)   p_kst 1.521445e-04   p_cons 5.256043e-01   p_joint 2.469526e-04

Joint ci ratio: 1.183393e-01	ci left: 2.324489e-04	ci right 2.619029e-04	k: 1096	n:4440000
Cons ci ratio: 1.767410e-03	ci left: 5.251374e-01	ci right 5.260666e-01	k: 2333673	n:4440000
KS ci ratio: 1.506463e-01	ci left: 1.409906e-04	ci right 1.641741e-04	k: 676	n:4440000
FOXK1   4440000 perm   7773 sec   (571 perm/sec)   p_kst 1.522523e-04   p_cons 5.256020e-01   p_joint 2.468468e-04

Joint ci ratio: 1.181241e-01	ci left: 2.327989e-04	ci right 2.622398e-04	k: 1100	n:4450000
Cons ci ratio: 1.765453e-03	ci left: 5.251296e-01	ci right 5.260578e-01	k: 2338892	n:4450000
KS ci ratio: 1.505352e-01	ci left: 1.408900e-04	ci right 1.640383e-04	k: 677	n:4450000
FOXK1   4450000 perm   7806 sec   (570 perm/sec)   p_kst 1.521348e-04   p_cons 5.255937e-01   p_joint 2.471910e-04

Joint ci ratio: 1.180705e-01	ci left: 2.324945e-04	ci right 2.618827e-04	k: 1101	n:4460000
Cons ci ratio: 1.763462e-03	ci left: 5.251331e-01	ci right 5.260602e-01	k: 2344161	n:4460000
KS ci ratio: 1.504243e-01	ci left: 1.407898e-04	ci right 1.639032e-04	k: 678	n:4460000
FOXK1   4460000 perm   7839 sec   (569 perm/sec)   p_kst 1.520179e-04   p_cons 5.255966e-01   p_joint 2.468610e-04

Joint ci ratio: 1.180170e-01	ci left: 2.321915e-04	ci right 2.615272e-04	k: 1102	n:4470000
Cons ci ratio: 1.761414e-03	ci left: 5.251546e-01	ci right 5.260807e-01	k: 2349511	n:4470000
KS ci ratio: 1.503137e-01	ci left: 1.406902e-04	ci right 1.637686e-04	k: 679	n:4470000
FOXK1   4470000 perm   7872 sec   (568 perm/sec)   p_kst 1.519016e-04   p_cons 5.256177e-01   p_joint 2.465324e-04

Joint ci ratio: 1.179636e-01	ci left: 2.318898e-04	ci right 2.611732e-04	k: 1103	n:4480000
Cons ci ratio: 1.759410e-03	ci left: 5.251656e-01	ci right 5.260906e-01	k: 2354814	n:4480000
KS ci ratio: 1.502033e-01	ci left: 1.405910e-04	ci right 1.636347e-04	k: 680	n:4480000
FOXK1   4480000 perm   7905 sec   (567 perm/sec)   p_kst 1.517857e-04   p_cons 5.256281e-01   p_joint 2.462054e-04

Joint ci ratio: 1.151299e-01	ci left: 2.432658e-04	ci right 2.731977e-04	k: 1158	n:4490000
Cons ci ratio: 1.719568e-03	ci left: 5.360197e-01	ci right 5.369424e-01	k: 2408800	n:4490000
KS ci ratio: 1.500931e-01	ci left: 1.404922e-04	ci right 1.635013e-04	k: 681	n:4490000
FOXK1   4490000 perm   7939 sec   (566 perm/sec)   p_kst 1.516704e-04   p_cons 5.364811e-01   p_joint 2.579065e-04

Joint ci ratio: 1.151300e-01	ci left: 2.427252e-04	ci right 2.725906e-04	k: 1158	n:4500000
Cons ci ratio: 1.717601e-03	ci left: 5.360360e-01	ci right 5.369577e-01	k: 2414236	n:4500000
KS ci ratio: 1.500932e-01	ci left: 1.401800e-04	ci right 1.631380e-04	k: 681	n:4500000
FOXK1   4500000 perm   7972 sec   (564 perm/sec)   p_kst 1.513333e-04   p_cons 5.364969e-01   p_joint 2.573333e-04

Joint ci ratio: 1.149812e-01	ci left: 2.428331e-04	ci right 2.726705e-04	k: 1161	n:4510000
Cons ci ratio: 1.715662e-03	ci left: 5.360465e-01	ci right 5.369672e-01	k: 2419646	n:4510000
KS ci ratio: 1.497641e-01	ci left: 1.405094e-04	ci right 1.634664e-04	k: 684	n:4510000
FOXK1   4510000 perm   8006 sec   (563 perm/sec)   p_kst 1.516630e-04   p_cons 5.365069e-01   p_joint 2.574279e-04

Joint ci ratio: 1.149813e-01	ci left: 2.422959e-04	ci right 2.720673e-04	k: 1161	n:4520000
Cons ci ratio: 1.713727e-03	ci left: 5.360574e-01	ci right 5.369771e-01	k: 2425058	n:4520000
KS ci ratio: 1.497641e-01	ci left: 1.401985e-04	ci right 1.631047e-04	k: 684	n:4520000
FOXK1   4520000 perm   8039 sec   (562 perm/sec)   p_kst 1.513274e-04   p_cons 5.365173e-01   p_joint 2.568584e-04

Joint ci ratio: 1.159333e-01	ci left: 2.376878e-04	ci right 2.671514e-04	k: 1142	n:4530000
Cons ci ratio: 1.711871e-03	ci left: 5.360473e-01	ci right 5.369659e-01	k: 2430375	n:4530000
KS ci ratio: 1.494372e-01	ci left: 1.405265e-04	ci right 1.634317e-04	k: 687	n:4530000
FOXK1   4530000 perm   8073 sec   (561 perm/sec)   p_kst 1.516556e-04   p_cons 5.365066e-01   p_joint 2.520971e-04

Joint ci ratio: 1.158320e-01	ci left: 2.375920e-04	ci right 2.670163e-04	k: 1144	n:4540000
Cons ci ratio: 1.710027e-03	ci left: 5.360354e-01	ci right 5.369531e-01	k: 2435684	n:4540000
KS ci ratio: 1.494373e-01	ci left: 1.402170e-04	ci right 1.630717e-04	k: 687	n:4540000
FOXK1   4540000 perm   8107 sec   (560 perm/sec)   p_kst 1.513216e-04   p_cons 5.364943e-01   p_joint 2.519824e-04

Joint ci ratio: 1.154294e-01	ci left: 2.387772e-04	ci right 2.682385e-04	k: 1152	n:4550000
Cons ci ratio: 1.708108e-03	ci left: 5.360472e-01	ci right 5.369638e-01	k: 2441100	n:4550000
KS ci ratio: 1.488971e-01	ci left: 1.409667e-04	ci right 1.638532e-04	k: 692	n:4550000
FOXK1   4550000 perm   8141 sec   (559 perm/sec)   p_kst 1.520879e-04   p_cons 5.365055e-01   p_joint 2.531868e-04

Joint ci ratio: 1.152795e-01	ci left: 2.388925e-04	ci right 2.683271e-04	k: 1155	n:4560000
Cons ci ratio: 1.706295e-03	ci left: 5.360301e-01	ci right 5.369457e-01	k: 2446385	n:4560000
KS ci ratio: 1.487898e-01	ci left: 1.408687e-04	ci right 1.637213e-04	k: 693	n:4560000
FOXK1   4560000 perm   8175 sec   (558 perm/sec)   p_kst 1.519737e-04   p_cons 5.364879e-01   p_joint 2.532895e-04

Joint ci ratio: 1.151799e-01	ci left: 2.387948e-04	ci right 2.681902e-04	k: 1157	n:4570000
Cons ci ratio: 1.704459e-03	ci left: 5.360212e-01	ci right 5.369358e-01	k: 2451707	n:4570000
KS ci ratio: 1.486828e-01	ci left: 1.407711e-04	ci right 1.635900e-04	k: 694	n:4570000
FOXK1   4570000 perm   8209 sec   (557 perm/sec)   p_kst 1.518600e-04   p_cons 5.364786e-01   p_joint 2.531729e-04

Joint ci ratio: 1.150310e-01	ci left: 2.389096e-04	ci right 2.682785e-04	k: 1160	n:4580000
Cons ci ratio: 1.702692e-03	ci left: 5.359940e-01	ci right 5.369077e-01	k: 2456945	n:4580000
KS ci ratio: 1.483629e-01	ci left: 1.410944e-04	ci right 1.639122e-04	k: 697	n:4580000
FOXK1   4580000 perm   8243 sec   (556 perm/sec)   p_kst 1.521834e-04   p_cons 5.364509e-01   p_joint 2.532751e-04

Joint ci ratio: 1.148827e-01	ci left: 2.390239e-04	ci right 2.683664e-04	k: 1163	n:4590000
Cons ci ratio: 1.700876e-03	ci left: 5.359829e-01	ci right 5.368955e-01	k: 2462256	n:4590000
KS ci ratio: 1.480450e-01	ci left: 1.414164e-04	ci right 1.642329e-04	k: 700	n:4590000
FOXK1   4590000 perm   8277 sec   (555 perm/sec)   p_kst 1.525054e-04   p_cons 5.364392e-01   p_joint 2.533769e-04

Joint ci ratio: 1.147841e-01	ci left: 2.389266e-04	ci right 2.682303e-04	k: 1165	n:4600000
Cons ci ratio: 1.699080e-03	ci left: 5.359676e-01	ci right 5.368793e-01	k: 2467548	n:4600000
KS ci ratio: 1.479396e-01	ci left: 1.413183e-04	ci right 1.641013e-04	k: 701	n:4600000
FOXK1   4600000 perm   8311 sec   (553 perm/sec)   p_kst 1.523913e-04   p_cons 5.364235e-01   p_joint 2.532609e-04

Joint ci ratio: 1.147349e-01	ci left: 2.386190e-04	ci right 2.678716e-04	k: 1166	n:4610000
Cons ci ratio: 1.697206e-03	ci left: 5.359770e-01	ci right 5.368876e-01	k: 2472953	n:4610000
KS ci ratio: 1.478343e-01	ci left: 1.412207e-04	ci right 1.639703e-04	k: 702	n:4610000
FOXK1   4610000 perm   8345 sec   (552 perm/sec)   p_kst 1.522777e-04   p_cons 5.364323e-01   p_joint 2.529284e-04

Joint ci ratio: 1.146858e-01	ci left: 2.383127e-04	ci right 2.675144e-04	k: 1167	n:4620000
Cons ci ratio: 1.695371e-03	ci left: 5.359768e-01	ci right 5.368864e-01	k: 2478314	n:4620000
KS ci ratio: 1.478343e-01	ci left: 1.409150e-04	ci right 1.636154e-04	k: 702	n:4620000
FOXK1   4620000 perm   8380 sec   (551 perm/sec)   p_kst 1.519481e-04   p_cons 5.364316e-01   p_joint 2.525974e-04

Joint ci ratio: 1.144899e-01	ci left: 2.386372e-04	ci right 2.678253e-04	k: 1171	n:4630000
Cons ci ratio: 1.693544e-03	ci left: 5.359759e-01	ci right 5.368845e-01	k: 2483672	n:4630000
KS ci ratio: 1.476245e-01	ci left: 1.410266e-04	ci right 1.637099e-04	k: 704	n:4630000
FOXK1   4630000 perm   8414 sec   (550 perm/sec)   p_kst 1.520518e-04   p_cons 5.364302e-01   p_joint 2.529158e-04

Joint ci ratio: 1.144411e-01	ci left: 2.383322e-04	ci right 2.674698e-04	k: 1172	n:4640000
Cons ci ratio: 1.691713e-03	ci left: 5.359778e-01	ci right 5.368855e-01	k: 2489043	n:4640000
KS ci ratio: 1.475199e-01	ci left: 1.409303e-04	ci right 1.635805e-04	k: 705	n:4640000
FOXK1   4640000 perm   8449 sec   (549 perm/sec)   p_kst 1.519397e-04   p_cons 5.364317e-01   p_joint 2.525862e-04

Joint ci ratio: 1.143437e-01	ci left: 2.382375e-04	ci right 2.673370e-04	k: 1174	n:4650000
Cons ci ratio: 1.689847e-03	ci left: 5.359918e-01	ci right 5.368985e-01	k: 2494470	n:4650000
KS ci ratio: 1.473114e-01	ci left: 1.410414e-04	ci right 1.636747e-04	k: 707	n:4650000
FOXK1   4650000 perm   8484 sec   (548 perm/sec)   p_kst 1.520430e-04   p_cons 5.364452e-01   p_joint 2.524731e-04

Joint ci ratio: 1.142951e-01	ci left: 2.379347e-04	ci right 2.669840e-04	k: 1175	n:4660000
Cons ci ratio: 1.688091e-03	ci left: 5.359752e-01	ci right 5.368810e-01	k: 2499755	n:4660000
KS ci ratio: 1.472075e-01	ci left: 1.409455e-04	ci right 1.635460e-04	k: 708	n:4660000
FOXK1   4660000 perm   8518 sec   (547 perm/sec)   p_kst 1.519313e-04   p_cons 5.364281e-01   p_joint 2.521459e-04

Joint ci ratio: 1.141980e-01	ci left: 2.378412e-04	ci right 2.668528e-04	k: 1177	n:4670000
Cons ci ratio: 1.686299e-03	ci left: 5.359707e-01	ci right 5.368755e-01	k: 2505096	n:4670000
KS ci ratio: 1.471038e-01	ci left: 1.408499e-04	ci right 1.634178e-04	k: 709	n:4670000
FOXK1   4670000 perm   8553 sec   (546 perm/sec)   p_kst 1.518201e-04   p_cons 5.364231e-01   p_joint 2.520343e-04

Joint ci ratio: 1.140046e-01	ci left: 2.381633e-04	ci right 2.671617e-04	k: 1181	n:4680000
Cons ci ratio: 1.684507e-03	ci left: 5.359682e-01	ci right 5.368720e-01	k: 2510446	n:4680000
KS ci ratio: 1.467940e-01	ci left: 1.411664e-04	ci right 1.637332e-04	k: 712	n:4680000
FOXK1   4680000 perm   8587 sec   (545 perm/sec)   p_kst 1.521368e-04   p_cons 5.364201e-01   p_joint 2.523504e-04

Joint ci ratio: 1.138602e-01	ci left: 2.382770e-04	ci right 2.672500e-04	k: 1184	n:4690000
Cons ci ratio: 1.682702e-03	ci left: 5.359712e-01	ci right 5.368740e-01	k: 2515822	n:4690000
KS ci ratio: 1.465885e-01	ci left: 1.412762e-04	ci right 1.638261e-04	k: 714	n:4690000
FOXK1   4690000 perm   8621 sec   (544 perm/sec)   p_kst 1.522388e-04   p_cons 5.364226e-01   p_joint 2.524520e-04

Joint ci ratio: 1.135730e-01	ci left: 2.390103e-04	ci right 2.679942e-04	k: 1190	n:4700000
Cons ci ratio: 1.680902e-03	ci left: 5.359741e-01	ci right 5.368760e-01	k: 2521198	n:4700000
KS ci ratio: 1.462819e-01	ci left: 1.415905e-04	ci right 1.641392e-04	k: 717	n:4700000
FOXK1   4700000 perm   8657 sec   (543 perm/sec)   p_kst 1.525532e-04   p_cons 5.364251e-01   p_joint 2.531915e-04

Joint ci ratio: 1.133353e-01	ci left: 2.395343e-04	ci right 2.685169e-04	k: 1195	n:4710000
Cons ci ratio: 1.679095e-03	ci left: 5.359809e-01	ci right 5.368819e-01	k: 2526592	n:4710000
KS ci ratio: 1.458761e-01	ci left: 1.421081e-04	ci right 1.646710e-04	k: 721	n:4710000
FOXK1   4710000 perm   8692 sec   (542 perm/sec)   p_kst 1.530786e-04   p_cons 5.364314e-01   p_joint 2.537155e-04

Joint ci ratio: 1.132407e-01	ci left: 2.394385e-04	ci right 2.683838e-04	k: 1197	n:4720000
Cons ci ratio: 1.677247e-03	ci left: 5.360017e-01	ci right 5.369017e-01	k: 2532052	n:4720000
KS ci ratio: 1.456745e-01	ci left: 1.422153e-04	ci right 1.647613e-04	k: 723	n:4720000
FOXK1   4720000 perm   8728 sec   (541 perm/sec)   p_kst 1.531780e-04   p_cons 5.364517e-01   p_joint 2.536017e-04

Joint ci ratio: 1.130521e-01	ci left: 2.397540e-04	ci right 2.686859e-04	k: 1201	n:4730000
Cons ci ratio: 1.675496e-03	ci left: 5.359955e-01	ci right 5.368945e-01	k: 2537385	n:4730000
KS ci ratio: 1.454737e-01	ci left: 1.423221e-04	ci right 1.648512e-04	k: 725	n:4730000
FOXK1   4730000 perm   8763 sec   (540 perm/sec)   p_kst 1.532770e-04   p_cons 5.364450e-01   p_joint 2.539112e-04

Joint ci ratio: 1.129582e-01	ci left: 2.396582e-04	ci right 2.685529e-04	k: 1203	n:4740000
Cons ci ratio: 1.673722e-03	ci left: 5.359976e-01	ci right 5.368956e-01	k: 2542757	n:4740000
KS ci ratio: 1.453736e-01	ci left: 1.422251e-04	ci right 1.647221e-04	k: 726	n:4740000
FOXK1   4740000 perm   8798 sec   (539 perm/sec)   p_kst 1.531646e-04   p_cons 5.364466e-01   p_joint 2.537975e-04

Joint ci ratio: 1.128645e-01	ci left: 2.395628e-04	ci right 2.684205e-04	k: 1205	n:4750000
Cons ci ratio: 1.671958e-03	ci left: 5.359984e-01	ci right 5.368955e-01	k: 2548123	n:4750000
KS ci ratio: 1.451740e-01	ci left: 1.423314e-04	ci right 1.648116e-04	k: 728	n:4750000
FOXK1   4750000 perm   8834 sec   (538 perm/sec)   p_kst 1.532632e-04   p_cons 5.364469e-01   p_joint 2.536842e-04

Joint ci ratio: 1.127243e-01	ci left: 2.396720e-04	ci right 2.685046e-04	k: 1208	n:4760000
Cons ci ratio: 1.670187e-03	ci left: 5.360032e-01	ci right 5.368993e-01	k: 2553508	n:4760000
KS ci ratio: 1.449753e-01	ci left: 1.424373e-04	ci right 1.649008e-04	k: 730	n:4760000
FOXK1   4760000 perm   8869 sec   (537 perm/sec)   p_kst 1.533613e-04   p_cons 5.364513e-01   p_joint 2.537815e-04

Joint ci ratio: 1.125383e-01	ci left: 2.399845e-04	ci right 2.688039e-04	k: 1212	n:4770000
Cons ci ratio: 1.668459e-03	ci left: 5.359966e-01	ci right 5.368918e-01	k: 2558839	n:4770000
KS ci ratio: 1.446787e-01	ci left: 1.427449e-04	ci right 1.652068e-04	k: 733	n:4770000
FOXK1   4770000 perm   8905 sec   (536 perm/sec)   p_kst 1.536688e-04   p_cons 5.364442e-01   p_joint 2.540881e-04

Joint ci ratio: 1.124920e-01	ci left: 2.396858e-04	ci right 2.684566e-04	k: 1213	n:4780000
Cons ci ratio: 1.666691e-03	ci left: 5.360035e-01	ci right 5.368978e-01	k: 2564234	n:4780000
KS ci ratio: 1.446787e-01	ci left: 1.424462e-04	ci right 1.648612e-04	k: 733	n:4780000
FOXK1   4780000 perm   8940 sec   (535 perm/sec)   p_kst 1.533473e-04   p_cons 5.364506e-01   p_joint 2.537657e-04

Joint ci ratio: 1.123532e-01	ci left: 2.397941e-04	ci right 2.685401e-04	k: 1216	n:4790000
Cons ci ratio: 1.664984e-03	ci left: 5.359940e-01	ci right 5.368874e-01	k: 2569551	n:4790000
KS ci ratio: 1.443839e-01	ci left: 1.427525e-04	ci right 1.651659e-04	k: 736	n:4790000
FOXK1   4790000 perm   8976 sec   (534 perm/sec)   p_kst 1.536534e-04   p_cons 5.364407e-01   p_joint 2.538622e-04

Joint ci ratio: 1.122150e-01	ci left: 2.399020e-04	ci right 2.686232e-04	k: 1219	n:4800000
Cons ci ratio: 1.663238e-03	ci left: 5.359977e-01	ci right 5.368901e-01	k: 2574931	n:4800000
KS ci ratio: 1.443840e-01	ci left: 1.424551e-04	ci right 1.648218e-04	k: 736	n:4800000
FOXK1   4800000 perm   9012 sec   (533 perm/sec)   p_kst 1.533333e-04   p_cons 5.364440e-01   p_joint 2.539583e-04

Joint ci ratio: 1.119857e-01	ci left: 2.404136e-04	ci right 2.691334e-04	k: 1224	n:4810000
Cons ci ratio: 1.661520e-03	ci left: 5.359946e-01	ci right 5.368861e-01	k: 2580278	n:4810000
KS ci ratio: 1.439937e-01	ci left: 1.429606e-04	ci right 1.653407e-04	k: 740	n:4810000
FOXK1   4810000 perm   9047 sec   (532 perm/sec)   p_kst 1.538462e-04   p_cons 5.364403e-01   p_joint 2.544699e-04

Joint ci ratio: 1.119401e-01	ci left: 2.401164e-04	ci right 2.687883e-04	k: 1225	n:4820000
Cons ci ratio: 1.659771e-03	ci left: 5.360024e-01	ci right 5.368930e-01	k: 2585678	n:4820000
KS ci ratio: 1.439937e-01	ci left: 1.426640e-04	ci right 1.649977e-04	k: 740	n:4820000
FOXK1   4820000 perm   9083 sec   (531 perm/sec)   p_kst 1.535270e-04   p_cons 5.364477e-01   p_joint 2.541494e-04

Joint ci ratio: 1.119401e-01	ci left: 2.396193e-04	ci right 2.682318e-04	k: 1225	n:4830000
Cons ci ratio: 1.658077e-03	ci left: 5.359953e-01	ci right 5.368850e-01	k: 2591006	n:4830000
KS ci ratio: 1.439937e-01	ci left: 1.423686e-04	ci right 1.646561e-04	k: 740	n:4830000
FOXK1   4830000 perm   9120 sec   (530 perm/sec)   p_kst 1.532091e-04   p_cons 5.364402e-01   p_joint 2.536232e-04

Joint ci ratio: 1.123072e-01	ci left: 2.375177e-04	ci right 2.659784e-04	k: 1217	n:4840000
Cons ci ratio: 1.656389e-03	ci left: 5.359878e-01	ci right 5.368766e-01	k: 2596332	n:4840000
KS ci ratio: 1.438967e-01	ci left: 1.422736e-04	ci right 1.645300e-04	k: 741	n:4840000
FOXK1   4840000 perm   9156 sec   (529 perm/sec)   p_kst 1.530992e-04   p_cons 5.364322e-01   p_joint 2.514463e-04

Joint ci ratio: 1.123073e-01	ci left: 2.370279e-04	ci right 2.654300e-04	k: 1217	n:4850000
Cons ci ratio: 1.654711e-03	ci left: 5.359792e-01	ci right 5.368670e-01	k: 2601652	n:4850000
KS ci ratio: 1.438967e-01	ci left: 1.419803e-04	ci right 1.641907e-04	k: 741	n:4850000
FOXK1   4850000 perm   9192 sec   (528 perm/sec)   p_kst 1.527835e-04   p_cons 5.364231e-01   p_joint 2.509278e-04

Joint ci ratio: 1.121233e-01	ci left: 2.373402e-04	ci right 2.657299e-04	k: 1221	n:4860000
Cons ci ratio: 1.652995e-03	ci left: 5.359837e-01	ci right 5.368706e-01	k: 2607036	n:4860000
KS ci ratio: 1.436067e-01	ci left: 1.422832e-04	ci right 1.644923e-04	k: 744	n:4860000
FOXK1   4860000 perm   9228 sec   (527 perm/sec)   p_kst 1.530864e-04   p_cons 5.364272e-01   p_joint 2.512346e-04

Joint ci ratio: 1.146866e-01	ci left: 2.260789e-04	ci right 2.537817e-04	k: 1167	n:4870000
Cons ci ratio: 1.651279e-03	ci left: 5.359894e-01	ci right 5.368754e-01	k: 2612426	n:4870000
KS ci ratio: 1.435104e-01	ci left: 1.421890e-04	ci right 1.643673e-04	k: 745	n:4870000
FOXK1   4870000 perm   9265 sec   (526 perm/sec)   p_kst 1.529774e-04   p_cons 5.364324e-01   p_joint 2.396304e-04

Joint ci ratio: 1.145885e-01	ci left: 2.260137e-04	ci right 2.536833e-04	k: 1169	n:4880000
Cons ci ratio: 1.649622e-03	ci left: 5.359792e-01	ci right 5.368642e-01	k: 2617738	n:4880000
KS ci ratio: 1.433184e-01	ci left: 1.422928e-04	ci right 1.644550e-04	k: 747	n:4880000
FOXK1   4880000 perm   9302 sec   (525 perm/sec)   p_kst 1.530738e-04   p_cons 5.364217e-01   p_joint 2.395492e-04

Joint ci ratio: 1.144419e-01	ci left: 2.261475e-04	ci right 2.537956e-04	k: 1172	n:4890000
Cons ci ratio: 1.647976e-03	ci left: 5.359671e-01	ci right 5.368513e-01	k: 2623041	n:4890000
KS ci ratio: 1.430318e-01	ci left: 1.425933e-04	ci right 1.647542e-04	k: 750	n:4890000
FOXK1   4890000 perm   9338 sec   (524 perm/sec)   p_kst 1.533742e-04   p_cons 5.364092e-01   p_joint 2.396728e-04

Joint ci ratio: 1.143931e-01	ci left: 2.258842e-04	ci right 2.534875e-04	k: 1173	n:4900000
Cons ci ratio: 1.646302e-03	ci left: 5.359649e-01	ci right 5.368481e-01	k: 2628392	n:4900000
KS ci ratio: 1.428418e-01	ci left: 1.426959e-04	ci right 1.648407e-04	k: 752	n:4900000
FOXK1   4900000 perm   9373 sec   (523 perm/sec)   p_kst 1.534694e-04   p_cons 5.364065e-01   p_joint 2.393878e-04

Joint ci ratio: 1.140536e-01	ci left: 2.268091e-04	ci right 2.544376e-04	k: 1180	n:4910000
Cons ci ratio: 1.644660e-03	ci left: 5.359547e-01	ci right 5.368371e-01	k: 2633704	n:4910000
KS ci ratio: 1.421823e-01	ci left: 1.437801e-04	ci right 1.659814e-04	k: 759	n:4910000
FOXK1   4910000 perm   9410 sec   (522 perm/sec)   p_kst 1.545825e-04   p_cons 5.363959e-01   p_joint 2.403259e-04

Joint ci ratio: 1.138609e-01	ci left: 2.271379e-04	ci right 2.547567e-04	k: 1184	n:4920000
Cons ci ratio: 1.642957e-03	ci left: 5.359645e-01	ci right 5.368460e-01	k: 2639114	n:4920000
KS ci ratio: 1.420889e-01	ci left: 1.436839e-04	ci right 1.658545e-04	k: 760	n:4920000
FOXK1   4920000 perm   9447 sec   (521 perm/sec)   p_kst 1.544715e-04   p_cons 5.364053e-01   p_joint 2.406504e-04

Joint ci ratio: 1.137649e-01	ci left: 2.270713e-04	ci right 2.546571e-04	k: 1186	n:4930000
Cons ci ratio: 1.641334e-03	ci left: 5.359514e-01	ci right 5.368320e-01	k: 2644411	n:4930000
KS ci ratio: 1.419025e-01	ci left: 1.437837e-04	ci right 1.659382e-04	k: 762	n:4930000
FOXK1   4930000 perm   9483 sec   (520 perm/sec)   p_kst 1.545639e-04   p_cons 5.363917e-01   p_joint 2.405680e-04

Joint ci ratio: 1.135737e-01	ci left: 2.273984e-04	ci right 2.549744e-04	k: 1190	n:4940000
Cons ci ratio: 1.639676e-03	ci left: 5.359506e-01	ci right 5.368303e-01	k: 2649769	n:4940000
KS ci ratio: 1.416244e-01	ci left: 1.440784e-04	ci right 1.662311e-04	k: 765	n:4940000
FOXK1   4940000 perm   9519 sec   (519 perm/sec)   p_kst 1.548583e-04   p_cons 5.363905e-01   p_joint 2.408907e-04

Joint ci ratio: 1.134309e-01	ci left: 2.275278e-04	ci right 2.550825e-04	k: 1193	n:4950000
Cons ci ratio: 1.638007e-03	ci left: 5.359547e-01	ci right 5.368335e-01	k: 2655151	n:4950000
KS ci ratio: 1.414398e-01	ci left: 1.441770e-04	ci right 1.663136e-04	k: 767	n:4950000
FOXK1   4950000 perm   9555 sec   (518 perm/sec)   p_kst 1.549495e-04   p_cons 5.363941e-01   p_joint 2.410101e-04

Joint ci ratio: 1.131470e-01	ci left: 2.282445e-04	ci right 2.558122e-04	k: 1199	n:4960000
Cons ci ratio: 1.636386e-03	ci left: 5.359457e-01	ci right 5.368236e-01	k: 2660468	n:4960000
KS ci ratio: 1.409816e-01	ci left: 1.448588e-04	ci right 1.670219e-04	k: 772	n:4960000
FOXK1   4960000 perm   9592 sec   (517 perm/sec)   p_kst 1.556452e-04   p_cons 5.363847e-01   p_joint 2.417339e-04

Joint ci ratio: 1.130058e-01	ci left: 2.283718e-04	ci right 2.559181e-04	k: 1202	n:4970000
Cons ci ratio: 1.634746e-03	ci left: 5.359442e-01	ci right 5.368212e-01	k: 2665822	n:4970000
KS ci ratio: 1.407996e-01	ci left: 1.449556e-04	ci right 1.671025e-04	k: 774	n:4970000
FOXK1   4970000 perm   9629 sec   (516 perm/sec)   p_kst 1.557344e-04   p_cons 5.363827e-01   p_joint 2.418511e-04

Joint ci ratio: 1.128184e-01	ci left: 2.286938e-04	ci right 2.562301e-04	k: 1206	n:4980000
Cons ci ratio: 1.633112e-03	ci left: 5.359420e-01	ci right 5.368182e-01	k: 2671173	n:4980000
KS ci ratio: 1.407996e-01	ci left: 1.446645e-04	ci right 1.667669e-04	k: 774	n:4980000
FOXK1   4980000 perm   9665 sec   (515 perm/sec)   p_kst 1.554217e-04   p_cons 5.363801e-01   p_joint 2.421687e-04

Joint ci ratio: 1.126784e-01	ci left: 2.288197e-04	ci right 2.563348e-04	k: 1209	n:4990000
Cons ci ratio: 1.631440e-03	ci left: 5.359531e-01	ci right 5.368284e-01	k: 2676590	n:4990000
KS ci ratio: 1.406183e-01	ci left: 1.447613e-04	ci right 1.668476e-04	k: 776	n:4990000
FOXK1   4990000 perm   9702 sec   (514 perm/sec)   p_kst 1.555110e-04   p_cons 5.363908e-01   p_joint 2.422846e-04

Joint ci ratio: 1.125854e-01	ci left: 2.287508e-04	ci right 2.562334e-04	k: 1211	n:5000000
Cons ci ratio: 1.629824e-03	ci left: 5.359486e-01	ci right 5.368230e-01	k: 2681929	n:5000000
KS ci ratio: 1.404376e-01	ci left: 1.448577e-04	ci right 1.669280e-04	k: 778	n:5000000
FOXK1   5000000 perm   9740 sec   (513 perm/sec)   p_kst 1.556000e-04   p_cons 5.363858e-01   p_joint 2.422000e-04

Outputting figure to mutsig2_images.part000000000066/FOXK1.4_2238_5000000_0.0001556_0.53639_0.0002422.png
                gene_name: FOXK1
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.00016 
        ci_ks_bounds_left: 0.00014 
       ci_ks_bounds_right: 0.00017 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.00024 
     ci_joint_bounds_left: 0.00023 
    ci_joint_bounds_right: 0.00026 

Current progress: 47 percent done.
FOXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
Cons ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
KS ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
FOXR1   10000 perm   2 sec   (6470 perm/sec)   p_kst 3.141000e-01   p_cons 3.232000e-01   p_joint 3.325000e-01

Outputting figure to mutsig2_images.part000000000066/FOXR1.4_903_10000_0.3141_0.3232_0.3325.png
                gene_name: FOXR1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
FOXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 6.551852e-02	ci left: 2.548856e-01	ci right 2.722523e-01	k: 2635	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
FOXR2   10000 perm   1 sec   (6883 perm/sec)   p_kst 3.202000e-01   p_cons 2.635000e-01   p_joint 3.126000e-01

Outputting figure to mutsig2_images.part000000000066/FOXR2.4_940_10000_0.3202_0.2635_0.3126.png
                gene_name: FOXR2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 50 percent done.
FPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
Cons ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
FPR1   10000 perm   1 sec   (7071 perm/sec)   p_kst 3.956000e-01   p_cons 5.580000e-02   p_joint 1.342000e-01

Joint ci ratio: 6.594358e-02	ci left: 1.451761e-01	ci right 1.551258e-01	k: 3002	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 3.384967e-02	ci left: 3.945464e-01	ci right 4.081822e-01	k: 8027	n:20000
FPR1   20000 perm   3 sec   (6295 perm/sec)   p_kst 4.013500e-01   p_cons 5.605000e-02   p_joint 1.501000e-01

Joint ci ratio: 6.798367e-02	ci left: 9.636481e-02	ci right 1.031796e-01	k: 2992	n:30000
Cons ci ratio: 9.868433e-02	ci left: 4.749567e-02	ci right 5.245861e-02	k: 1498	n:30000
KS ci ratio: 2.749100e-02	ci left: 3.983737e-01	ci right 4.095116e-01	k: 12118	n:30000
FPR1   30000 perm   5 sec   (5978 perm/sec)   p_kst 4.039333e-01   p_cons 4.993333e-02   p_joint 9.973333e-02

Outputting figure to mutsig2_images.part000000000066/FPR1.4_1057_30000_0.40393_0.049933_0.099733.png
                gene_name: FPR1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 52 percent done.
FMNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
FMNL2   10000 perm   2 sec   (6025 perm/sec)   p_kst 6.200000e-02   p_cons 5.410000e-02   p_joint 8.230000e-02

Joint ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
Cons ci ratio: 1.165281e-01	ci left: 5.042141e-02	ci right 5.670918e-02	k: 1070	n:20000
KS ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
FMNL2   20000 perm   4 sec   (5390 perm/sec)   p_kst 6.600000e-02   p_cons 5.350000e-02   p_joint 9.530000e-02

Joint ci ratio: 6.536993e-02	ci left: 1.035236e-01	ci right 1.105527e-01	k: 3210	n:30000
Cons ci ratio: 9.420431e-02	ci left: 5.199044e-02	ci right 5.716291e-02	k: 1636	n:30000
KS ci ratio: 8.569486e-02	ci left: 6.239923e-02	ci right 6.801866e-02	k: 1955	n:30000
FMNL2   30000 perm   6 sec   (5159 perm/sec)   p_kst 6.516667e-02   p_cons 5.453333e-02   p_joint 1.070000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL2.3_3383_30000_0.065167_0.054533_0.107.png
                gene_name: FMNL2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 53 percent done.
FNBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
Cons ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
KS ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
FNBP1   10000 perm   2 sec   (6626 perm/sec)   p_kst 8.436000e-01   p_cons 2.694000e-01   p_joint 6.061000e-01

Outputting figure to mutsig2_images.part000000000066/FNBP1.3_1922_10000_0.8436_0.2694_0.6061.png
                gene_name: FNBP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
FNBP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
Cons ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
KS ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
FNBP1L   10000 perm   2 sec   (6629 perm/sec)   p_kst 4.229000e-01   p_cons 5.370000e-02   p_joint 3.078000e-01

Joint ci ratio: 3.535727e-02	ci left: 3.738637e-01	ci right 3.873710e-01	k: 7612	n:20000
Cons ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
KS ci ratio: 3.244354e-02	ci left: 4.150423e-01	ci right 4.287804e-01	k: 8438	n:20000
FNBP1L   20000 perm   3 sec   (5902 perm/sec)   p_kst 4.219000e-01   p_cons 5.145000e-02   p_joint 3.806000e-01

Joint ci ratio: 2.732236e-02	ci left: 4.013336e-01	ci right 4.124844e-01	k: 12207	n:30000
Cons ci ratio: 9.696037e-02	ci left: 4.915615e-02	ci right 5.419779e-02	k: 1549	n:30000
KS ci ratio: 2.670192e-02	ci left: 4.124434e-01	ci right 4.236391e-01	k: 12541	n:30000
FNBP1L   30000 perm   5 sec   (5646 perm/sec)   p_kst 4.180333e-01   p_cons 5.163333e-02   p_joint 4.069000e-01

Outputting figure to mutsig2_images.part000000000066/FNBP1L.3_1906_30000_0.41803_0.051633_0.4069.png
                gene_name: FNBP1L
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 57 percent done.
FNTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
Cons ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
KS ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
FNTA   10000 perm   1 sec   (6822 perm/sec)   p_kst 2.099000e-01   p_cons 1.734000e-01   p_joint 3.040000e-01

Outputting figure to mutsig2_images.part000000000066/FNTA.3_1176_10000_0.2099_0.1734_0.304.png
                gene_name: FNTA
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
FOSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
Cons ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
KS ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
FOSB   10000 perm   1 sec   (6846 perm/sec)   p_kst 9.578000e-01   p_cons 1.322000e-01   p_joint 4.876000e-01

Joint ci ratio: 2.732846e-02	ci left: 5.000956e-01	ci right 5.140024e-01	k: 10141	n:20000
Cons ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
KS ci ratio: 6.037142e-03	ci left: 9.517775e-01	ci right 9.575893e-01	k: 19095	n:20000
FOSB   20000 perm   3 sec   (6059 perm/sec)   p_kst 9.547500e-01   p_cons 1.288500e-01   p_joint 5.070500e-01

Outputting figure to mutsig2_images.part000000000066/FOSB.3_1033_20000_0.95475_0.12885_0.50705.png
                gene_name: FOSB
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 60 percent done.
FOSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
Cons ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
FOSL1   10000 perm   1 sec   (6903 perm/sec)   p_kst 3.656000e-01   p_cons 3.217000e-01   p_joint 4.455000e-01

Outputting figure to mutsig2_images.part000000000066/FOSL1.3_832_10000_0.3656_0.3217_0.4455.png
                gene_name: FOSL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
FOXB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
KS ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
FOXB1   10000 perm   1 sec   (7062 perm/sec)   p_kst 1.490000e-01   p_cons 8.456000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000066/FOXB1.3_982_10000_0.149_0.8456_0.2906.png
                gene_name: FOXB1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 63 percent done.
FOXB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
Cons ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
KS ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
FOXB2   10000 perm   1 sec   (6837 perm/sec)   p_kst 6.443000e-01   p_cons 7.940000e-02   p_joint 3.342000e-01

Joint ci ratio: 2.759759e-02	ci left: 4.951957e-01	ci right 5.091037e-01	k: 10043	n:20000
Cons ci ratio: 9.364690e-02	ci left: 7.676561e-02	ci right 8.435686e-02	k: 1610	n:20000
KS ci ratio: 2.047777e-02	ci left: 6.402303e-01	ci right 6.535270e-01	k: 12938	n:20000
FOXB2   20000 perm   3 sec   (6135 perm/sec)   p_kst 6.469000e-01   p_cons 8.050000e-02   p_joint 5.021500e-01

Outputting figure to mutsig2_images.part000000000066/FOXB2.3_1303_20000_0.6469_0.0805_0.50215.png
                gene_name: FOXB2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 65 percent done.
FOXJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
FOXJ3   10000 perm   1 sec   (7062 perm/sec)   p_kst 9.489000e-01   p_cons 6.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXJ3.3_1917_10000_0.9489_0.6698_1.png
                gene_name: FOXJ3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FOXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
Cons ci ratio: 6.568770e-02	ci left: 2.538964e-01	ci right 2.712421e-01	k: 2625	n:10000
KS ci ratio: 2.208869e-02	ci left: 7.504927e-01	ci right 7.673562e-01	k: 7590	n:10000
FOXL1   10000 perm   1 sec   (7019 perm/sec)   p_kst 7.590000e-01   p_cons 2.625000e-01   p_joint 7.278000e-01

Outputting figure to mutsig2_images.part000000000066/FOXL1.3_1042_10000_0.759_0.2625_0.7278.png
                gene_name: FOXL1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 68 percent done.
FOXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
Cons ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KS ci ratio: 4.998711e-02	ci left: 3.711691e-01	ci right 3.903004e-01	k: 3807	n:10000
FOXN3   10000 perm   1 sec   (6670 perm/sec)   p_kst 3.807000e-01   p_cons 6.101000e-01   p_joint 5.117000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN3.3_1497_10000_0.3807_0.6101_0.5117.png
                gene_name: FOXN3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 70 percent done.
FOXO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
Cons ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
KS ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
FOXO1   10000 perm   1 sec   (6993 perm/sec)   p_kst 3.380000e-02   p_cons 4.540000e-02   p_joint 6.100000e-03

Joint ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
Cons ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
KS ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
FOXO1   20000 perm   3 sec   (6231 perm/sec)   p_kst 3.435000e-02   p_cons 4.375000e-02   p_joint 2.245000e-02

Joint ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
Cons ci ratio: 1.050768e-01	ci left: 4.199920e-02	ci right 4.668956e-02	k: 1329	n:30000
KS ci ratio: 1.186022e-01	ci left: 3.304597e-02	ci right 3.724468e-02	k: 1053	n:30000
FOXO1   30000 perm   5 sec   (5943 perm/sec)   p_kst 3.510000e-02   p_cons 4.430000e-02   p_joint 3.026667e-02

Joint ci ratio: 1.283864e-01	ci left: 2.131102e-02	ci right 2.425883e-02	k: 910	n:40000
Cons ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
KS ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
FOXO1   40000 perm   7 sec   (5738 perm/sec)   p_kst 3.565000e-02   p_cons 4.477500e-02   p_joint 2.275000e-02

Joint ci ratio: 1.251629e-01	ci left: 1.803453e-02	ci right 2.046174e-02	k: 961	n:50000
Cons ci ratio: 8.085342e-02	ci left: 4.308171e-02	ci right 4.673136e-02	k: 2244	n:50000
KS ci ratio: 9.089960e-02	ci left: 3.422762e-02	ci right 3.750655e-02	k: 1792	n:50000
FOXO1   50000 perm   9 sec   (5565 perm/sec)   p_kst 3.584000e-02   p_cons 4.488000e-02   p_joint 1.922000e-02

Joint ci ratio: 1.207315e-01	ci left: 1.622326e-02	ci right 1.832381e-02	k: 1035	n:60000
Cons ci ratio: 7.402488e-02	ci left: 4.299477e-02	ci right 4.631613e-02	k: 2678	n:60000
KS ci ratio: 8.315224e-02	ci left: 3.422955e-02	ci right 3.721558e-02	k: 2142	n:60000
FOXO1   60000 perm   11 sec   (5428 perm/sec)   p_kst 3.570000e-02   p_cons 4.463333e-02   p_joint 1.725000e-02

Joint ci ratio: 7.204940e-02	ci left: 3.910776e-02	ci right 4.204476e-02	k: 2839	n:70000
Cons ci ratio: 6.561461e-02	ci left: 4.692022e-02	ci right 5.011734e-02	k: 3395	n:70000
KS ci ratio: 7.713086e-02	ci left: 3.421147e-02	ci right 3.697006e-02	k: 2490	n:70000
FOXO1   70000 perm   13 sec   (5304 perm/sec)   p_kst 3.557143e-02   p_cons 4.850000e-02   p_joint 4.055714e-02

Outputting figure to mutsig2_images.part000000000066/FOXO1.3_1976_70000_0.035571_0.0485_0.040557.png
                gene_name: FOXO1
               theta_stop: 0.077 
                    nperm: 70000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 72 percent done.
FOXO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
Cons ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
KS ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
FOXO3   10000 perm   2 sec   (6573 perm/sec)   p_kst 2.278000e-01   p_cons 2.630000e-02   p_joint 3.320000e-01

Joint ci ratio: 7.095440e-02	ci left: 1.276823e-01	ci right 1.371249e-01	k: 2647	n:20000
Cons ci ratio: 1.673511e-01	ci left: 2.446191e-02	ci right 2.897711e-02	k: 533	n:20000
KS ci ratio: 5.101892e-02	ci left: 2.220518e-01	ci right 2.337274e-01	k: 4557	n:20000
FOXO3   20000 perm   3 sec   (5870 perm/sec)   p_kst 2.278500e-01   p_cons 2.665000e-02   p_joint 1.323500e-01

Joint ci ratio: 6.228440e-02	ci left: 1.129888e-01	ci right 1.202856e-01	k: 3498	n:30000
Cons ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
KS ci ratio: 4.172806e-02	ci left: 2.225345e-01	ci right 2.320517e-01	k: 6818	n:30000
FOXO3   30000 perm   5 sec   (5577 perm/sec)   p_kst 2.272667e-01   p_cons 2.573333e-02   p_joint 1.166000e-01

Joint ci ratio: 6.028415e-02	ci left: 9.271071e-02	ci right 9.849815e-02	k: 3823	n:40000
Cons ci ratio: 1.216539e-01	ci left: 2.375887e-02	ci right 2.686057e-02	k: 1011	n:40000
KS ci ratio: 3.623046e-02	ci left: 2.222814e-01	ci right 2.305084e-01	k: 9055	n:40000
FOXO3   40000 perm   7 sec   (5405 perm/sec)   p_kst 2.263750e-01   p_cons 2.527500e-02   p_joint 9.557500e-02

Joint ci ratio: 5.275619e-02	ci left: 9.681053e-02	ci right 1.020761e-01	k: 4971	n:50000
Cons ci ratio: 1.092101e-01	ci left: 2.374649e-02	ci right 2.650902e-02	k: 1255	n:50000
KS ci ratio: 3.246858e-02	ci left: 2.220418e-01	ci right 2.293901e-01	k: 11285	n:50000
FOXO3   50000 perm   9 sec   (5269 perm/sec)   p_kst 2.257000e-01   p_cons 2.510000e-02   p_joint 9.942000e-02

Joint ci ratio: 4.450403e-02	ci left: 1.119460e-01	ci right 1.170580e-01	k: 6869	n:60000
Cons ci ratio: 9.953241e-02	ci left: 2.394432e-02	ci right 2.646856e-02	k: 1511	n:60000
KS ci ratio: 2.966114e-02	ci left: 2.221113e-01	ci right 2.288152e-01	k: 13527	n:60000
FOXO3   60000 perm   12 sec   (5145 perm/sec)   p_kst 2.254500e-01   p_cons 2.518333e-02   p_joint 1.144833e-01

Outputting figure to mutsig2_images.part000000000066/FOXO3.3_2030_60000_0.22545_0.025183_0.11448.png
                gene_name: FOXO3
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 73 percent done.
FOXRED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.129725e-02	ci left: 7.637498e-01	ci right 7.802915e-01	k: 7721	n:10000
Cons ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
KS ci ratio: 2.176870e-02	ci left: 7.558549e-01	ci right 7.725909e-01	k: 7643	n:10000
FOXRED1   10000 perm   2 sec   (6602 perm/sec)   p_kst 7.643000e-01   p_cons 3.647000e-01   p_joint 7.721000e-01

Outputting figure to mutsig2_images.part000000000066/FOXRED1.3_1505_10000_0.7643_0.3647_0.7721.png
                gene_name: FOXRED1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 75 percent done.
FMNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
FMNL1   10000 perm   2 sec   (6209 perm/sec)   p_kst 4.235000e-01   p_cons 5.060000e-02   p_joint 3.213000e-01

Joint ci ratio: 2.542987e-02	ci left: 5.360153e-01	ci right 5.498722e-01	k: 10859	n:20000
Cons ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
KS ci ratio: 3.229767e-02	ci left: 4.172372e-01	ci right 4.309848e-01	k: 8482	n:20000
FMNL1   20000 perm   4 sec   (5505 perm/sec)   p_kst 4.241000e-01   p_cons 5.185000e-02   p_joint 5.429500e-01

Joint ci ratio: 4.125074e-02	ci left: 2.265711e-01	ci right 2.361476e-01	k: 6940	n:30000
Cons ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
KS ci ratio: 2.643300e-02	ci left: 4.173673e-01	ci right 4.285809e-01	k: 12689	n:30000
FMNL1   30000 perm   6 sec   (5263 perm/sec)   p_kst 4.229667e-01   p_cons 5.063333e-02   p_joint 2.313333e-01

Outputting figure to mutsig2_images.part000000000066/FMNL1.2_3407_30000_0.42297_0.050633_0.23133.png
                gene_name: FMNL1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
FMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
KS ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
FMOD   10000 perm   1 sec   (7140 perm/sec)   p_kst 8.994000e-01   p_cons 4.658000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FMOD.2_1139_10000_0.8994_0.4658_1.png
                gene_name: FMOD
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
FN3KRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
FN3KRP   10000 perm   1 sec   (7336 perm/sec)   p_kst 3.428000e-01   p_cons 8.369000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FN3KRP.2_954_10000_0.3428_0.8369_1.png
                gene_name: FN3KRP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FNBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
FNBP4   10000 perm   2 sec   (6261 perm/sec)   p_kst 6.759000e-01   p_cons 9.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FNBP4.2_3122_10000_0.6759_0.9682_1.png
                gene_name: FNBP4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
FNDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
Cons ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
KS ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
FNDC8   10000 perm   1 sec   (7502 perm/sec)   p_kst 3.603000e-01   p_cons 9.199000e-01   p_joint 6.278000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC8.2_991_10000_0.3603_0.9199_0.6278.png
                gene_name: FNDC8
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 83 percent done.
FOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.125455e-02	ci left: 4.645717e-01	ci right 4.842432e-01	k: 4744	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
FOXA1   10000 perm   1 sec   (6956 perm/sec)   p_kst 5.838000e-01   p_cons 3.061000e-01   p_joint 4.744000e-01

Outputting figure to mutsig2_images.part000000000066/FOXA1.2_1427_10000_0.5838_0.3061_0.4744.png
                gene_name: FOXA1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 85 percent done.
FOXD4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
FOXD4L1   10000 perm   1 sec   (7303 perm/sec)   p_kst 6.106000e-01   p_cons 8.073000e-01   p_joint 9.724000e-01

Outputting figure to mutsig2_images.part000000000066/FOXD4L1.2_1231_10000_0.6106_0.8073_0.9724.png
                gene_name: FOXD4L1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
FOXD4L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360699e-03	ci left: 9.909413e-01	ci right 9.943623e-01	k: 9928	n:10000
Cons ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
FOXD4L5   10000 perm   1 sec   (7141 perm/sec)   p_kst 7.626000e-01   p_cons 8.018000e-01   p_joint 9.928000e-01

Outputting figure to mutsig2_images.part000000000066/FOXD4L5.2_1255_10000_0.7626_0.8018_0.9928.png
                gene_name: FOXD4L5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
FOXK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
KS ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
FOXK2   10000 perm   1 sec   (6977 perm/sec)   p_kst 4.251000e-01   p_cons 1.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXK2.2_2019_10000_0.4251_0.1395_1.png
                gene_name: FOXK2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
FOXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
FOXL2   10000 perm   1 sec   (7206 perm/sec)   p_kst 8.583000e-01   p_cons 2.350000e-02   p_joint 3.946000e-01

Joint ci ratio: 5.847869e-02	ci left: 1.780579e-01	ci right 1.888343e-01	k: 3668	n:20000
Cons ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
KS ci ratio: 1.121934e-02	ci left: 8.543531e-01	ci right 8.640422e-01	k: 17185	n:20000
FOXL2   20000 perm   3 sec   (6418 perm/sec)   p_kst 8.592500e-01   p_cons 2.200000e-02   p_joint 1.834000e-01

Joint ci ratio: 5.129122e-02	ci left: 1.587705e-01	ci right 1.671616e-01	k: 4888	n:30000
Cons ci ratio: 1.569605e-01	ci left: 1.876615e-02	ci right 2.199434e-02	k: 610	n:30000
KS ci ratio: 9.294324e-03	ci left: 8.516726e-01	ci right 8.596584e-01	k: 25671	n:30000
FOXL2   30000 perm   5 sec   (6052 perm/sec)   p_kst 8.557000e-01   p_cons 2.033333e-02   p_joint 1.629333e-01

Joint ci ratio: 4.803061e-02	ci left: 1.393106e-01	ci right 1.461913e-01	k: 5709	n:40000
Cons ci ratio: 1.380816e-01	ci left: 1.838475e-02	ci right 2.113559e-02	k: 789	n:40000
KS ci ratio: 8.071013e-03	ci left: 8.515365e-01	ci right 8.584619e-01	k: 34201	n:40000
FOXL2   40000 perm   7 sec   (5829 perm/sec)   p_kst 8.550250e-01   p_cons 1.972500e-02   p_joint 1.427250e-01

Joint ci ratio: 4.734329e-02	ci left: 1.177180e-01	ci right 1.234461e-01	k: 6028	n:50000
Cons ci ratio: 1.237923e-01	ci left: 1.844169e-02	ci right 2.089453e-02	k: 982	n:50000
KS ci ratio: 7.217283e-03	ci left: 8.519639e-01	ci right 8.581549e-01	k: 42754	n:50000
FOXL2   50000 perm   9 sec   (5658 perm/sec)   p_kst 8.550800e-01   p_cons 1.964000e-02   p_joint 1.205600e-01

Joint ci ratio: 3.876143e-02	ci left: 1.428032e-01	ci right 1.484644e-01	k: 8737	n:60000
Cons ci ratio: 1.141268e-01	ci left: 1.818174e-02	ci right 2.039844e-02	k: 1156	n:60000
KS ci ratio: 6.615330e-03	ci left: 8.512164e-01	ci right 8.568827e-01	k: 51244	n:60000
FOXL2   60000 perm   11 sec   (5515 perm/sec)   p_kst 8.540667e-01   p_cons 1.926667e-02   p_joint 1.456167e-01

Joint ci ratio: 4.661392e-02	ci left: 8.961426e-02	ci right 9.390536e-02	k: 6422	n:70000
Cons ci ratio: 1.054554e-01	ci left: 1.833540e-02	ci right 2.039043e-02	k: 1354	n:70000
KS ci ratio: 6.111126e-03	ci left: 8.519812e-01	ci right 8.572179e-01	k: 59823	n:70000
FOXL2   70000 perm   13 sec   (5385 perm/sec)   p_kst 8.546143e-01   p_cons 1.934286e-02   p_joint 9.174286e-02

Joint ci ratio: 2.381522e-02	ci left: 2.499654e-01	ci right 2.560026e-01	k: 20238	n:80000
Cons ci ratio: 9.805131e-02	ci left: 1.862622e-02	ci right 2.055884e-02	k: 1566	n:80000
KS ci ratio: 5.726809e-03	ci left: 8.516977e-01	ci right 8.566016e-01	k: 68333	n:80000
FOXL2   80000 perm   15 sec   (5272 perm/sec)   p_kst 8.541625e-01   p_cons 1.957500e-02   p_joint 2.529750e-01

Outputting figure to mutsig2_images.part000000000066/FOXL2.2_1135_80000_0.85416_0.019575_0.25298.png
                gene_name: FOXL2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 92 percent done.
FOXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
Cons ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
FOXN2   10000 perm   1 sec   (7366 perm/sec)   p_kst 8.417000e-01   p_cons 6.498000e-01   p_joint 9.690000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN2.2_1316_10000_0.8417_0.6498_0.969.png
                gene_name: FOXN2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
FOXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
Cons ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
FOXN4   10000 perm   1 sec   (6785 perm/sec)   p_kst 5.860000e-02   p_cons 9.720000e-02   p_joint 5.320000e-02

Joint ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
Cons ci ratio: 8.380750e-02	ci left: 9.445279e-02	ci right 1.027643e-01	k: 1971	n:20000
KS ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
FOXN4   20000 perm   3 sec   (6093 perm/sec)   p_kst 5.910000e-02   p_cons 9.855000e-02   p_joint 8.880000e-02

Joint ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
Cons ci ratio: 6.844182e-02	ci left: 9.518314e-02	ci right 1.019615e-01	k: 2956	n:30000
KS ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
FOXN4   30000 perm   5 sec   (5835 perm/sec)   p_kst 6.060000e-02   p_cons 9.853333e-02   p_joint 6.263333e-02

Outputting figure to mutsig2_images.part000000000066/FOXN4.2_1590_30000_0.0606_0.098533_0.062633.png
                gene_name: FOXN4
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 95 percent done.
FOXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
KS ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
FOXO4   10000 perm   1 sec   (6875 perm/sec)   p_kst 2.827000e-01   p_cons 8.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXO4.2_1530_10000_0.2827_0.8596_1.png
                gene_name: FOXO4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
FOXP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
Cons ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
KS ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
FOXP1   10000 perm   2 sec   (6665 perm/sec)   p_kst 6.607000e-01   p_cons 8.675000e-01   p_joint 8.947000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP1.2_2267_10000_0.6607_0.8675_0.8947.png
                gene_name: FOXP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 98 percent done.
FPGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
KS ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
FPGT   10000 perm   1 sec   (6745 perm/sec)   p_kst 5.422000e-01   p_cons 3.153000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FPGT.2_1801_10000_0.5422_0.3153_1.png
                gene_name: FPGT
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000066
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 66 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 4421967: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000067> was used as the working directory.
Started at Wed Oct 24 17:47:19 2012
Results reported at Wed Oct 24 18:05:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000067.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000067.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 67  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000067.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1172.91 sec.
    Max Memory :      5194 MB
    Max Swap   :      7602 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
67
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 67
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 67: processing genes 5972 - 6061
Calculating significance of each gene.
Using projection method.
5972	FPR2	6.745018e-02
5973	FPR3	1
5974	FRA10AC1	1
5975	FRAS1	3.267296e-01
5976	FREM1	9.999944e-01
5977	FREM2	9.999637e-01
5978	FRG1	2.597757e-03
5979	FRG2B	4.509673e-01
5980	FRK	6.080571e-01
5981	FRMD1	7.077436e-01
5982	FRMD3	4.058873e-01
5983	FRMD4A	1
5984	FRMD4B	9.931482e-01
5985	FRMD5	1
5986	FRMD6	2.003521e-01
5987	FRMD7	1.242671e-01
5988	FRMD8	1.809325e-02
5989	FRMPD1	9.971169e-01
5990	FRMPD2	9.562857e-01
5991	FRMPD4	1
5992	FRRS1	9.580179e-01
5993	FRS2	7.692604e-01
5994	FRS3	1
5995	FRY	9.999992e-01
In gene FRYL the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 9195    n = 1	mu =   7.03e-07
5996	FRYL	9.999994e-01
5997	FRZB	4.671072e-01
5998	FSCB	6.789565e-02
5999	FSCN1	4.939404e-01
6000/18094 6000	FSCN2	1
6001	FSCN3	8.631496e-01
6002	FSD1	1
6003	FSD2	3.647340e-01
6004	FSHB	4.063881e-01
6005	FSHR	5.313580e-01
6006	FSIP1	6.037309e-01
6007	FST	4.567409e-01
6008	FSTL1	2.585721e-01
6009	FSTL3	1
6010	FSTL4	8.020923e-01
6011	FSTL5	5.332276e-04
6012	FTCD	3.104496e-01
6013	FTH1	1
6014	FTHL17	1.001481e-01
6015	FTL	2.390695e-01
6016	FTMT	3.446140e-01
6017	FTO	8.032706e-01
6018	FTSJ1	1.438596e-01
6019	FTSJ2	1.644220e-01
6020	FTSJ3	9.385812e-01
6021	FTSJD1	1.386085e-03
6022	FTSJD2	9.933882e-01
6023	FUBP1	5.960480e-01
6024	FUBP3	8.643201e-01
6025	FUCA1	8.780154e-01
6026	FUCA2	7.834334e-01
6027	FUK	8.859482e-01
6028	FUNDC1	1
6029	FUNDC2	4.226680e-01
6030	FURIN	5.232689e-01
6031	FUS	8.927121e-01
6032	FUT1	7.528760e-01
6033	FUT10	7.185998e-01
6034	FUT11	5.670689e-01
6035	FUT2	1
6036	FUT3	5.418287e-01
6037	FUT4	1
6038	FUT5	1
6039	FUT6	1
6040	FUT7	3.993152e-01
6041	FUT8	3.942837e-01
6042	FUT9	1
6043	FUZ	6.527532e-01
6044	FXC1	1
6045	FXN	6.667232e-02
6046	FXR1	9.341882e-01
6047	FXR2	7.011992e-01
6048	FXYD1	2.804713e-01
6049	FXYD2	1.826133e-01
6050	FXYD3	1
6051	FXYD4	1
6052	FXYD5	4.166528e-01
6053	FXYD6	1
6054	FXYD7	1.480694e-01
6055	FYB	8.947543e-01
6056	FYCO1	9.883590e-01
6057	FYN	1
6058	FYTTD1	8.207955e-01
6059	FZD1	1
6060	FZD10	4.769411e-02
6061	FZD2	9.422399e-01
Done

Running MutSig 2:
Scatter job 67: processing genes 5972 - 6061
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FRAS1
Processing conservation and coverage...
80% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
Cons ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
KS ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
FRAS1   10000 perm   4 sec   (2564 perm/sec)   p_kst 2.532000e-01   p_cons 3.860000e-02   p_joint 5.600000e-02

Joint ci ratio: 7.834346e-02	ci left: 1.068747e-01	ci right 1.156386e-01	k: 2224	n:20000
Cons ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
KS ci ratio: 4.571055e-02	ci left: 2.626648e-01	ci right 2.750025e-01	k: 5376	n:20000
FRAS1   20000 perm   10 sec   (1947 perm/sec)   p_kst 2.688000e-01   p_cons 4.530000e-02   p_joint 1.112000e-01

Joint ci ratio: 6.969054e-02	ci left: 9.206559e-02	ci right 9.874633e-02	k: 2861	n:30000
Cons ci ratio: 1.025218e-01	ci left: 4.407958e-02	ci right 4.887540e-02	k: 1393	n:30000
KS ci ratio: 3.708513e-02	ci left: 2.663074e-01	ci right 2.764036e-01	k: 8140	n:30000
FRAS1   30000 perm   15 sec   (2033 perm/sec)   p_kst 2.713333e-01   p_cons 4.643333e-02   p_joint 9.536667e-02

Joint ci ratio: 6.195532e-02	ci left: 8.814944e-02	ci right 9.381010e-02	k: 3638	n:40000
Cons ci ratio: 9.722791e-02	ci left: 3.714825e-02	ci right 4.096904e-02	k: 1561	n:40000
KS ci ratio: 3.223215e-02	ci left: 2.655790e-01	ci right 2.743044e-01	k: 10797	n:40000
FRAS1   40000 perm   19 sec   (2075 perm/sec)   p_kst 2.699250e-01   p_cons 3.902500e-02   p_joint 9.095000e-02

Outputting figure to mutsig2_images.part000000000067/FRAS1.37_12410_40000_0.26993_0.039025_0.09095.png
                gene_name: FRAS1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 2 percent done.
FSTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
Cons ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
FSTL5   10000 perm   2 sec   (4423 perm/sec)   p_kst 3.237000e-01   p_cons 6.389000e-01   p_joint 4.951000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL5.24_2604_10000_0.3237_0.6389_0.4951.png
                gene_name: FSTL5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 3 percent done.
FSCB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
Cons ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
FSCB   10000 perm   2 sec   (4894 perm/sec)   p_kst 6.581000e-01   p_cons 2.583000e-01   p_joint 5.595000e-01

Outputting figure to mutsig2_images.part000000000067/FSCB.21_2482_10000_0.6581_0.2583_0.5595.png
                gene_name: FSCB
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 5 percent done.
FSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
Cons ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
FSHR   10000 perm   2 sec   (4532 perm/sec)   p_kst 5.840000e-01   p_cons 8.867000e-01   p_joint 7.077000e-01

Outputting figure to mutsig2_images.part000000000067/FSHR.20_2128_10000_0.584_0.8867_0.7077.png
                gene_name: FSHR
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 7 percent done.
FYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
FYB   10000 perm   2 sec   (4696 perm/sec)   p_kst 3.249000e-01   p_cons 5.091000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000067/FYB.16_2562_10000_0.3249_0.5091_0.4437.png
                gene_name: FYB
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 8 percent done.
FREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
Cons ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
KS ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
FREM1   10000 perm   3 sec   (3787 perm/sec)   p_kst 6.781000e-01   p_cons 6.303000e-01   p_joint 7.337000e-01

Outputting figure to mutsig2_images.part000000000067/FREM1.15_6734_10000_0.6781_0.6303_0.7337.png
                gene_name: FREM1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 10 percent done.
FRY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
Cons ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
KS ci ratio: 9.777696e-03	ci left: 9.367201e-01	ci right 9.460207e-01	k: 9415	n:10000
FRY   10000 perm   3 sec   (3277 perm/sec)   p_kst 9.415000e-01   p_cons 1.052000e-01   p_joint 3.539000e-01

Joint ci ratio: 3.229767e-02	ci left: 4.172372e-01	ci right 4.309848e-01	k: 8482	n:20000
Cons ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
KS ci ratio: 7.883242e-03	ci left: 9.214670e-01	ci right 9.288089e-01	k: 18504	n:20000
FRY   20000 perm   7 sec   (3046 perm/sec)   p_kst 9.252000e-01   p_cons 1.087000e-01   p_joint 4.241000e-01

Outputting figure to mutsig2_images.part000000000067/FRY.15_9286_20000_0.9252_0.1087_0.4241.png
                gene_name: FRY
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 12 percent done.
FRMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
FRMPD1   10000 perm   2 sec   (4152 perm/sec)   p_kst 3.101000e-01   p_cons 9.334000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD1.14_4797_10000_0.3101_0.9334_0.7021.png
                gene_name: FRMPD1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 14 percent done.
FREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.529198e-02	ci left: 3.251526e-01	ci right 3.437439e-01	k: 3344	n:10000
Cons ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
FREM2   10000 perm   3 sec   (3194 perm/sec)   p_kst 1.667000e-01   p_cons 6.574000e-01   p_joint 3.344000e-01

Outputting figure to mutsig2_images.part000000000067/FREM2.13_9606_10000_0.1667_0.6574_0.3344.png
                gene_name: FREM2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 15 percent done.
FRMPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
Cons ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
KS ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
FRMPD4   10000 perm   2 sec   (4544 perm/sec)   p_kst 3.887000e-01   p_cons 9.845000e-01   p_joint 4.685000e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD4.12_4037_10000_0.3887_0.9845_0.4685.png
                gene_name: FRMPD4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 17 percent done.
FRYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
FRYL   10000 perm   3 sec   (3455 perm/sec)   p_kst 6.768000e-01   p_cons 3.375000e-01   p_joint 6.927000e-01

Outputting figure to mutsig2_images.part000000000067/FRYL.12_9286_10000_0.6768_0.3375_0.6927.png
                gene_name: FRYL
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 19 percent done.
FTSJD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.387633e-01	ci left: 6.875045e-02	ci right 7.909941e-02	k: 738	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
FTSJD1   10000 perm   2 sec   (4750 perm/sec)   p_kst 1.310000e-01   p_cons 2.450000e-02   p_joint 7.380000e-02

Joint ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
Cons ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
KS ci ratio: 7.215255e-02	ci left: 1.239406e-01	ci right 1.332677e-01	k: 2571	n:20000
FTSJD1   20000 perm   5 sec   (4300 perm/sec)   p_kst 1.285500e-01   p_cons 2.820000e-02   p_joint 6.680000e-02

Joint ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
Cons ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
KS ci ratio: 5.808615e-02	ci left: 1.279583e-01	ci right 1.356464e-01	k: 3953	n:30000
FTSJD1   30000 perm   7 sec   (4118 perm/sec)   p_kst 1.317667e-01   p_cons 2.713333e-02   p_joint 5.423333e-02

Joint ci ratio: 9.778297e-02	ci left: 3.673323e-02	ci right 4.053413e-02	k: 1544	n:40000
Cons ci ratio: 1.176031e-01	ci left: 2.543352e-02	ci right 2.863564e-02	k: 1080	n:40000
KS ci ratio: 5.040338e-02	ci left: 1.280294e-01	ci right 1.346742e-01	k: 5253	n:40000
FTSJD1   40000 perm   10 sec   (4005 perm/sec)   p_kst 1.313250e-01   p_cons 2.700000e-02   p_joint 3.860000e-02

Joint ci ratio: 7.590420e-02	ci left: 4.871462e-02	ci right 5.257777e-02	k: 2531	n:50000
Cons ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
KS ci ratio: 4.491899e-02	ci left: 1.292029e-01	ci right 1.351598e-01	k: 6608	n:50000
FTSJD1   50000 perm   13 sec   (3915 perm/sec)   p_kst 1.321600e-01   p_cons 2.708000e-02   p_joint 5.062000e-02

Joint ci ratio: 8.120725e-02	ci left: 3.586319e-02	ci right 3.891510e-02	k: 2242	n:60000
Cons ci ratio: 9.585599e-02	ci left: 2.581533e-02	ci right 2.843068e-02	k: 1626	n:60000
KS ci ratio: 4.109130e-02	ci left: 1.289872e-01	ci right 1.344152e-01	k: 7901	n:60000
FTSJD1   60000 perm   16 sec   (3836 perm/sec)   p_kst 1.316833e-01   p_cons 2.710000e-02   p_joint 3.736667e-02

Outputting figure to mutsig2_images.part000000000067/FTSJD1.11_2317_60000_0.13168_0.0271_0.037367.png
                gene_name: FTSJD1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 20 percent done.
FPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
Cons ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
FPR2   10000 perm   2 sec   (5371 perm/sec)   p_kst 6.871000e-01   p_cons 2.493000e-01   p_joint 4.847000e-01

Outputting figure to mutsig2_images.part000000000067/FPR2.10_1060_10000_0.6871_0.2493_0.4847.png
                gene_name: FPR2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 22 percent done.
FRG2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
Cons ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
KS ci ratio: 2.965940e-02	ci left: 6.263806e-01	ci right 6.453402e-01	k: 6359	n:10000
FRG2B   10000 perm   2 sec   (6018 perm/sec)   p_kst 6.359000e-01   p_cons 2.919000e-01   p_joint 6.337000e-01

Outputting figure to mutsig2_images.part000000000067/FRG2B.8_852_10000_0.6359_0.2919_0.6337.png
                gene_name: FRG2B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 24 percent done.
FYCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
Cons ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
KS ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
FYCO1   10000 perm   2 sec   (4513 perm/sec)   p_kst 4.928000e-01   p_cons 4.270000e-02   p_joint 1.247000e-01

Joint ci ratio: 8.060316e-02	ci left: 1.014715e-01	ci right 1.100435e-01	k: 2114	n:20000
Cons ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
KS ci ratio: 2.810725e-02	ci left: 4.860476e-01	ci right 4.999544e-01	k: 9860	n:20000
FYCO1   20000 perm   5 sec   (4137 perm/sec)   p_kst 4.930000e-01   p_cons 4.130000e-02   p_joint 1.057000e-01

Joint ci ratio: 7.346969e-02	ci left: 8.347369e-02	ci right 8.987329e-02	k: 2599	n:30000
Cons ci ratio: 1.093625e-01	ci left: 3.881651e-02	ci right 4.333958e-02	k: 1231	n:30000
KS ci ratio: 2.293782e-02	ci left: 4.875935e-01	ci right 4.989412e-01	k: 14798	n:30000
FYCO1   30000 perm   8 sec   (3982 perm/sec)   p_kst 4.932667e-01   p_cons 4.103333e-02   p_joint 8.663333e-02

Joint ci ratio: 6.046790e-02	ci left: 9.219284e-02	ci right 9.796610e-02	k: 3802	n:40000
Cons ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
KS ci ratio: 1.983786e-02	ci left: 4.890385e-01	ci right 4.988623e-01	k: 19758	n:40000
FYCO1   40000 perm   10 sec   (3873 perm/sec)   p_kst 4.939500e-01   p_cons 4.120000e-02   p_joint 9.505000e-02

Outputting figure to mutsig2_images.part000000000067/FYCO1.8_4505_40000_0.49395_0.0412_0.09505.png
                gene_name: FYCO1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 25 percent done.
FZD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
Cons ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
FZD10   10000 perm   2 sec   (5128 perm/sec)   p_kst 8.490000e-02   p_cons 4.653000e-01   p_joint 1.280000e-01

Joint ci ratio: 6.478008e-02	ci left: 1.497138e-01	ci right 1.597868e-01	k: 3094	n:20000
Cons ci ratio: 2.877601e-02	ci left: 4.743035e-01	ci right 4.882019e-01	k: 9625	n:20000
KS ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
FZD10   20000 perm   4 sec   (4649 perm/sec)   p_kst 7.695000e-02   p_cons 4.812500e-01   p_joint 1.547000e-01

Outputting figure to mutsig2_images.part000000000067/FZD10.8_1750_20000_0.07695_0.48125_0.1547.png
                gene_name: FZD10
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 27 percent done.
FRMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 3.442662e-02	ci left: 5.547144e-01	ci right 5.742480e-01	k: 5645	n:10000
FRMPD2   10000 perm   2 sec   (4451 perm/sec)   p_kst 5.645000e-01   p_cons 5.240000e-02   p_joint 1.650000e-01

Joint ci ratio: 6.085843e-02	ci left: 1.665459e-01	ci right 1.770497e-01	k: 3435	n:20000
Cons ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
KS ci ratio: 2.451357e-02	ci left: 5.541889e-01	ci right 5.679933e-01	k: 11222	n:20000
FRMPD2   20000 perm   5 sec   (4087 perm/sec)   p_kst 5.611000e-01   p_cons 4.800000e-02   p_joint 1.717500e-01

Joint ci ratio: 4.902618e-02	ci left: 1.713425e-01	ci right 1.799871e-01	k: 5269	n:30000
Cons ci ratio: 9.952582e-02	ci left: 4.671454e-02	ci right 5.163990e-02	k: 1474	n:30000
KS ci ratio: 1.994667e-02	ci left: 5.571644e-01	ci right 5.684235e-01	k: 16884	n:30000
FRMPD2   30000 perm   8 sec   (3941 perm/sec)   p_kst 5.628000e-01   p_cons 4.913333e-02   p_joint 1.756333e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD2.7_4046_30000_0.5628_0.049133_0.17563.png
                gene_name: FRMPD2
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 29 percent done.
FSCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
FSCN3   10000 perm   2 sec   (5559 perm/sec)   p_kst 7.424000e-01   p_cons 2.208000e-01   p_joint 5.484000e-01

Outputting figure to mutsig2_images.part000000000067/FSCN3.7_1521_10000_0.7424_0.2208_0.5484.png
                gene_name: FSCN3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 31 percent done.
FSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
Cons ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
KS ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
FSD2   10000 perm   2 sec   (5285 perm/sec)   p_kst 1.818000e-01   p_cons 4.412000e-01   p_joint 3.075000e-01

Outputting figure to mutsig2_images.part000000000067/FSD2.7_2298_10000_0.1818_0.4412_0.3075.png
                gene_name: FSD2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 32 percent done.
FURIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
Cons ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
KS ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
FURIN   10000 perm   2 sec   (5127 perm/sec)   p_kst 7.143000e-01   p_cons 2.499000e-01   p_joint 4.786000e-01

Outputting figure to mutsig2_images.part000000000067/FURIN.7_2445_10000_0.7143_0.2499_0.4786.png
                gene_name: FURIN
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 34 percent done.
FUT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
KS ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
FUT9   10000 perm   2 sec   (5975 perm/sec)   p_kst 7.227000e-01   p_cons 9.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUT9.7_1084_10000_0.7227_0.9121_1.png
                gene_name: FUT9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
FRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
Cons ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
FRG1   10000 perm   2 sec   (6159 perm/sec)   p_kst 3.090000e-02   p_cons 5.895000e-01   p_joint 6.680000e-02

Joint ci ratio: 9.222233e-02	ci left: 7.901657e-02	ci right 8.670521e-02	k: 1656	n:20000
Cons ci ratio: 2.266392e-02	ci left: 5.924695e-01	ci right 6.061016e-01	k: 11986	n:20000
KS ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
FRG1   20000 perm   4 sec   (5493 perm/sec)   p_kst 3.050000e-02   p_cons 5.993000e-01   p_joint 8.280000e-02

Joint ci ratio: 7.308563e-02	ci left: 8.429313e-02	ci right 9.072035e-02	k: 2624	n:30000
Cons ci ratio: 1.861728e-02	ci left: 5.908224e-01	ci right 6.019589e-01	k: 17892	n:30000
KS ci ratio: 1.261822e-01	ci left: 2.919686e-02	ci right 3.316128e-02	k: 934	n:30000
FRG1   30000 perm   6 sec   (5241 perm/sec)   p_kst 3.113333e-02   p_cons 5.964000e-01   p_joint 8.746667e-02

Joint ci ratio: 5.667399e-02	ci left: 1.037894e-01	ci right 1.098679e-01	k: 4272	n:40000
Cons ci ratio: 1.613240e-02	ci left: 5.912972e-01	ci right 6.009389e-01	k: 23845	n:40000
KS ci ratio: 1.089920e-01	ci left: 2.961518e-02	ci right 3.305331e-02	k: 1252	n:40000
FRG1   40000 perm   8 sec   (5088 perm/sec)   p_kst 3.130000e-02   p_cons 5.961250e-01   p_joint 1.068000e-01

Joint ci ratio: 5.642863e-02	ci left: 8.553082e-02	ci right 9.051713e-02	k: 4400	n:50000
Cons ci ratio: 1.439774e-02	ci left: 5.928654e-01	ci right 6.014833e-01	k: 29859	n:50000
KS ci ratio: 9.711020e-02	ci left: 3.002533e-02	ci right 3.310937e-02	k: 1577	n:50000
FRG1   50000 perm   10 sec   (4967 perm/sec)   p_kst 3.154000e-02   p_cons 5.971800e-01   p_joint 8.800000e-02

Outputting figure to mutsig2_images.part000000000067/FRG1.6_813_50000_0.03154_0.59718_0.088.png
                gene_name: FRG1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 37 percent done.
FRMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
FRMD3   10000 perm   2 sec   (5834 perm/sec)   p_kst 1.425000e-01   p_cons 5.880000e-02   p_joint 8.000000e-02

Joint ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
Cons ci ratio: 1.147833e-01	ci left: 5.192892e-02	ci right 5.830119e-02	k: 1101	n:20000
KS ci ratio: 6.835849e-02	ci left: 1.363520e-01	ci right 1.460525e-01	k: 2823	n:20000
FRMD3   20000 perm   4 sec   (5212 perm/sec)   p_kst 1.411500e-01   p_cons 5.505000e-02   p_joint 8.140000e-02

Joint ci ratio: 7.228873e-02	ci left: 8.603062e-02	ci right 9.251584e-02	k: 2677	n:30000
Cons ci ratio: 9.466392e-02	ci left: 5.150162e-02	ci right 5.665183e-02	k: 1621	n:30000
KS ci ratio: 5.565425e-02	ci left: 1.379366e-01	ci right 1.458663e-01	k: 4256	n:30000
FRMD3   30000 perm   6 sec   (4975 perm/sec)   p_kst 1.418667e-01   p_cons 5.403333e-02   p_joint 8.923333e-02

Outputting figure to mutsig2_images.part000000000067/FRMD3.6_1850_30000_0.14187_0.054033_0.089233.png
                gene_name: FRMD3
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.093 

Current progress: 39 percent done.
FRMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
FRMD7   10000 perm   2 sec   (5300 perm/sec)   p_kst 7.100000e-02   p_cons 5.159000e-01   p_joint 2.380000e-01

Joint ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
Cons ci ratio: 2.752594e-02	ci left: 4.964956e-01	ci right 5.104034e-01	k: 10069	n:20000
KS ci ratio: 1.006450e-01	ci left: 6.694105e-02	ci right 7.408442e-02	k: 1409	n:20000
FRMD7   20000 perm   4 sec   (4781 perm/sec)   p_kst 7.045000e-02   p_cons 5.034500e-01   p_joint 1.278000e-01

Joint ci ratio: 5.980539e-02	ci left: 1.215077e-01	ci right 1.290317e-01	k: 3757	n:30000
Cons ci ratio: 2.298069e-02	ci left: 4.866604e-01	ci right 4.980078e-01	k: 14770	n:30000
KS ci ratio: 8.236553e-02	ci left: 6.730134e-02	ci right 7.311556e-02	k: 2105	n:30000
FRMD7   30000 perm   7 sec   (4580 perm/sec)   p_kst 7.016667e-02   p_cons 4.923333e-01   p_joint 1.252333e-01

Outputting figure to mutsig2_images.part000000000067/FRMD7.6_2193_30000_0.070167_0.49233_0.12523.png
                gene_name: FRMD7
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 41 percent done.
FRMD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
Cons ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
FRMD6   10000 perm   2 sec   (5423 perm/sec)   p_kst 3.410000e-02   p_cons 2.931000e-01   p_joint 9.140000e-02

Joint ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
Cons ci ratio: 4.327114e-02	ci left: 2.846113e-01	ci right 2.972495e-01	k: 5818	n:20000
KS ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
FRMD6   20000 perm   4 sec   (4880 perm/sec)   p_kst 3.340000e-02   p_cons 2.909000e-01   p_joint 1.091500e-01

Joint ci ratio: 1.054507e-01	ci left: 4.170676e-02	ci right 4.638206e-02	k: 1320	n:30000
Cons ci ratio: 3.531795e-02	ci left: 2.859302e-01	ci right 2.962437e-01	k: 8732	n:30000
KS ci ratio: 1.199052e-01	ci left: 3.233379e-02	ci right 3.649034e-02	k: 1031	n:30000
FRMD6   30000 perm   6 sec   (4671 perm/sec)   p_kst 3.436667e-02   p_cons 2.910667e-01   p_joint 4.400000e-02

Joint ci ratio: 7.511163e-02	ci left: 6.135051e-02	ci right 6.616306e-02	k: 2549	n:40000
Cons ci ratio: 3.058812e-02	ci left: 2.866013e-01	ci right 2.955291e-01	k: 11642	n:40000
KS ci ratio: 1.010962e-01	ci left: 3.439075e-02	ci right 3.807697e-02	k: 1448	n:40000
FRMD6   40000 perm   9 sec   (4537 perm/sec)   p_kst 3.620000e-02   p_cons 2.910500e-01   p_joint 6.372500e-02

Joint ci ratio: 6.630322e-02	ci left: 6.316948e-02	ci right 6.752115e-02	k: 3266	n:50000
Cons ci ratio: 2.737577e-02	ci left: 2.868217e-01	ci right 2.948026e-01	k: 14540	n:50000
KS ci ratio: 8.951077e-02	ci left: 3.528411e-02	ci right 3.860993e-02	k: 1846	n:50000
FRMD6   50000 perm   11 sec   (4423 perm/sec)   p_kst 3.692000e-02   p_cons 2.908000e-01   p_joint 6.532000e-02

Outputting figure to mutsig2_images.part000000000067/FRMD6.5_1897_50000_0.03692_0.2908_0.06532.png
                gene_name: FRMD6
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 42 percent done.
FRMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
Cons ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
FRMD8   10000 perm   2 sec   (5781 perm/sec)   p_kst 5.463000e-01   p_cons 8.421000e-01   p_joint 8.832000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD8.5_1435_10000_0.5463_0.8421_0.8832.png
                gene_name: FRMD8
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 44 percent done.
FTO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
Cons ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
FTO   10000 perm   2 sec   (5861 perm/sec)   p_kst 4.101000e-01   p_cons 6.852000e-01   p_joint 5.950000e-01

Outputting figure to mutsig2_images.part000000000067/FTO.5_1554_10000_0.4101_0.6852_0.595.png
                gene_name: FTO
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 46 percent done.
FRRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
KS ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
FRRS1   10000 perm   2 sec   (5747 perm/sec)   p_kst 8.454000e-01   p_cons 9.250000e-02   p_joint 3.885000e-01

Joint ci ratio: 3.422945e-02	ci left: 3.892126e-01	ci right 4.028177e-01	k: 7920	n:20000
Cons ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
KS ci ratio: 1.097471e-02	ci left: 8.596787e-01	ci right 8.692151e-01	k: 17290	n:20000
FRRS1   20000 perm   4 sec   (5171 perm/sec)   p_kst 8.645000e-01   p_cons 8.610000e-02   p_joint 3.960000e-01

Outputting figure to mutsig2_images.part000000000067/FRRS1.4_1941_20000_0.8645_0.0861_0.396.png
                gene_name: FRRS1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 47 percent done.
FRZB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
Cons ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
KS ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
FRZB   10000 perm   2 sec   (6188 perm/sec)   p_kst 3.195000e-01   p_cons 2.877000e-01   p_joint 4.523000e-01

Outputting figure to mutsig2_images.part000000000067/FRZB.4_1002_10000_0.3195_0.2877_0.4523.png
                gene_name: FRZB
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 49 percent done.
FTMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
Cons ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
KS ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
FTMT   10000 perm   2 sec   (6624 perm/sec)   p_kst 5.084000e-01   p_cons 8.150000e-01   p_joint 7.482000e-01

Outputting figure to mutsig2_images.part000000000067/FTMT.4_733_10000_0.5084_0.815_0.7482.png
                gene_name: FTMT
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 51 percent done.
FTSJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
Cons ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
FTSJ1   10000 perm   2 sec   (6031 perm/sec)   p_kst 2.391000e-01   p_cons 3.950000e-01   p_joint 4.525000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ1.4_1034_10000_0.2391_0.395_0.4525.png
                gene_name: FTSJ1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 53 percent done.
FUT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
FUT8   10000 perm   2 sec   (5927 perm/sec)   p_kst 8.648000e-01   p_cons 1.521000e-01   p_joint 5.450000e-01

Outputting figure to mutsig2_images.part000000000067/FUT8.4_1863_10000_0.8648_0.1521_0.545.png
                gene_name: FUT8
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 54 percent done.
FXR2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
KS ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
FXR2   10000 perm   2 sec   (5983 perm/sec)   p_kst 7.770000e-01   p_cons 6.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FXR2.3_1990_10000_0.777_0.6285_1.png
                gene_name: FXR2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
FSCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
FSCN1   10000 perm   2 sec   (6048 perm/sec)   p_kst 8.622000e-01   p_cons 5.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FSCN1.3_1502_10000_0.8622_0.5986_1.png
                gene_name: FSCN1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
FSIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
Cons ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
KS ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
FSIP1   10000 perm   2 sec   (6087 perm/sec)   p_kst 3.509000e-01   p_cons 8.764000e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000067/FSIP1.3_1790_10000_0.3509_0.8764_0.7102.png
                gene_name: FSIP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 59 percent done.
FSTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
Cons ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
FSTL1   10000 perm   2 sec   (6356 perm/sec)   p_kst 3.456000e-01   p_cons 5.706000e-01   p_joint 3.569000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL1.3_967_10000_0.3456_0.5706_0.3569.png
                gene_name: FSTL1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
FSTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.130555e-02	ci left: 3.590346e-01	ci right 3.780420e-01	k: 3685	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
FSTL4   10000 perm   2 sec   (5620 perm/sec)   p_kst 1.947000e-01   p_cons 4.328000e-01   p_joint 3.685000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL4.3_2589_10000_0.1947_0.4328_0.3685.png
                gene_name: FSTL4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 63 percent done.
FTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
Cons ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
FTCD   10000 perm   2 sec   (6164 perm/sec)   p_kst 1.294000e-01   p_cons 2.753000e-01   p_joint 2.751000e-01

Joint ci ratio: 5.297981e-02	ci left: 2.091746e-01	ci right 2.206084e-01	k: 4297	n:20000
Cons ci ratio: 4.501736e-02	ci left: 2.686709e-01	ci right 2.810946e-01	k: 5497	n:20000
KS ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
FTCD   20000 perm   4 sec   (5478 perm/sec)   p_kst 1.298000e-01   p_cons 2.748500e-01   p_joint 2.148500e-01

Outputting figure to mutsig2_images.part000000000067/FTCD.3_1682_20000_0.1298_0.27485_0.21485.png
                gene_name: FTCD
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
FTHL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
Cons ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
KS ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
FTHL17   10000 perm   2 sec   (6472 perm/sec)   p_kst 2.510000e-01   p_cons 1.259000e-01   p_joint 2.609000e-01

Joint ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
Cons ci ratio: 7.295216e-02	ci left: 1.215289e-01	ci right 1.307801e-01	k: 2522	n:20000
KS ci ratio: 4.818950e-02	ci left: 2.425724e-01	ci right 2.546008e-01	k: 4971	n:20000
FTHL17   20000 perm   3 sec   (5722 perm/sec)   p_kst 2.485500e-01   p_cons 1.261000e-01   p_joint 1.725000e-01

Outputting figure to mutsig2_images.part000000000067/FTHL17.3_556_20000_0.24855_0.1261_0.1725.png
                gene_name: FTHL17
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 66 percent done.
FTSJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
FTSJ2   10000 perm   2 sec   (6444 perm/sec)   p_kst 2.431000e-01   p_cons 3.052000e-01   p_joint 3.516000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ2.3_753_10000_0.2431_0.3052_0.3516.png
                gene_name: FTSJ2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 68 percent done.
FTSJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
FTSJ3   10000 perm   2 sec   (5673 perm/sec)   p_kst 5.104000e-01   p_cons 5.719000e-01   p_joint 9.187000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ3.3_2624_10000_0.5104_0.5719_0.9187.png
                gene_name: FTSJ3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 69 percent done.
FUBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
Cons ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KS ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
FUBP1   10000 perm   2 sec   (5930 perm/sec)   p_kst 3.070000e-01   p_cons 6.101000e-01   p_joint 3.599000e-01

Outputting figure to mutsig2_images.part000000000067/FUBP1.3_2015_10000_0.307_0.6101_0.3599.png
                gene_name: FUBP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
FUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
FUK   10000 perm   2 sec   (5526 perm/sec)   p_kst 2.562000e-01   p_cons 8.622000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000067/FUK.3_3347_10000_0.2562_0.8622_0.4576.png
                gene_name: FUK
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 73 percent done.
FXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
FXN   10000 perm   2 sec   (6543 perm/sec)   p_kst 5.291000e-01   p_cons 8.837000e-01   p_joint 8.913000e-01

Outputting figure to mutsig2_images.part000000000067/FXN.3_699_10000_0.5291_0.8837_0.8913.png
                gene_name: FXN
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 75 percent done.
FYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
FYN   10000 perm   2 sec   (6020 perm/sec)   p_kst 8.520000e-02   p_cons 1.933000e-01   p_joint 2.888000e-01

Joint ci ratio: 4.935896e-02	ci left: 2.337967e-01	ci right 2.456790e-01	k: 4794	n:20000
Cons ci ratio: 5.698118e-02	ci left: 1.858691e-01	ci right 1.968208e-01	k: 3826	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
FYN   20000 perm   4 sec   (5365 perm/sec)   p_kst 8.875000e-02   p_cons 1.913000e-01   p_joint 2.397000e-01

Outputting figure to mutsig2_images.part000000000067/FYN.3_1818_20000_0.08875_0.1913_0.2397.png
                gene_name: FYN
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 76 percent done.
FZD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
FZD1   10000 perm   2 sec   (6137 perm/sec)   p_kst 1.035000e-01   p_cons 1.100000e-03   p_joint 1.070000e-02

Joint ci ratio: 4.293715e-01	ci left: 3.262140e-03	ci right 5.086662e-03	k: 82	n:20000
Cons ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
KS ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
FZD1   20000 perm   4 sec   (5457 perm/sec)   p_kst 1.041000e-01   p_cons 1.300000e-03   p_joint 4.100000e-03

Joint ci ratio: 4.058478e-01	ci left: 2.472860e-03	ci right 3.759688e-03	k: 92	n:30000
Cons ci ratio: 6.044355e-01	ci left: 9.809166e-04	ci right 1.853586e-03	k: 41	n:30000
KS ci ratio: 6.603981e-02	ci left: 1.016185e-01	ci right 1.085915e-01	k: 3152	n:30000
FZD1   30000 perm   6 sec   (5185 perm/sec)   p_kst 1.050667e-01   p_cons 1.366667e-03   p_joint 3.066667e-03

Joint ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
Cons ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
KS ci ratio: 5.692038e-02	ci left: 1.029747e-01	ci right 1.090326e-01	k: 4239	n:40000
FZD1   40000 perm   8 sec   (5012 perm/sec)   p_kst 1.059750e-01   p_cons 1.375000e-03   p_joint 2.600000e-03

Joint ci ratio: 2.992539e-01	ci left: 2.908789e-03	ci right 3.950180e-03	k: 170	n:50000
Cons ci ratio: 4.463769e-01	ci left: 1.197768e-03	ci right 1.902143e-03	k: 76	n:50000
KS ci ratio: 5.104600e-02	ci left: 1.028005e-01	ci right 1.082054e-01	k: 5274	n:50000
FZD1   50000 perm   10 sec   (4865 perm/sec)   p_kst 1.054800e-01   p_cons 1.520000e-03   p_joint 3.400000e-03

Joint ci ratio: 2.809819e-01	ci left: 2.779427e-03	ci right 3.702991e-03	k: 193	n:60000
Cons ci ratio: 4.039969e-01	ci left: 1.251227e-03	ci right 1.898523e-03	k: 93	n:60000
KS ci ratio: 4.658613e-02	ci left: 1.030857e-01	ci right 1.080192e-01	k: 6332	n:60000
FZD1   60000 perm   13 sec   (4659 perm/sec)   p_kst 1.055333e-01   p_cons 1.550000e-03   p_joint 3.216667e-03

Joint ci ratio: 2.021547e-01	ci left: 4.802700e-03	ci right 5.896062e-03	k: 373	n:70000
Cons ci ratio: 3.786683e-01	ci left: 1.239934e-03	ci right 1.831194e-03	k: 106	n:70000
KS ci ratio: 4.306040e-02	ci left: 1.035731e-01	ci right 1.081453e-01	k: 7409	n:70000
FZD1   70000 perm   15 sec   (4566 perm/sec)   p_kst 1.058429e-01   p_cons 1.514286e-03   p_joint 5.328571e-03

Joint ci ratio: 1.872205e-01	ci left: 4.939665e-03	ci right 5.971698e-03	k: 435	n:80000
Cons ci ratio: 3.489441e-01	ci left: 1.300773e-03	ci right 1.861370e-03	k: 125	n:80000
KS ci ratio: 4.023040e-02	ci left: 1.039492e-01	ci right 1.082294e-01	k: 8486	n:80000
FZD1   80000 perm   18 sec   (4486 perm/sec)   p_kst 1.060750e-01   p_cons 1.562500e-03   p_joint 5.437500e-03

Joint ci ratio: 1.857849e-01	ci left: 4.464856e-03	ci right 5.389720e-03	k: 442	n:90000
Cons ci ratio: 3.275445e-01	ci left: 1.329107e-03	ci right 1.859405e-03	k: 142	n:90000
KS ci ratio: 3.800731e-02	ci left: 1.036875e-01	ci right 1.077157e-01	k: 9512	n:90000
FZD1   90000 perm   20 sec   (4408 perm/sec)   p_kst 1.056889e-01   p_cons 1.577778e-03   p_joint 4.911111e-03

Joint ci ratio: 1.899671e-01	ci left: 3.837185e-03	ci right 4.651983e-03	k: 423	n:100000
Cons ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
KS ci ratio: 3.607027e-02	ci left: 1.037215e-01	ci right 1.075414e-01	k: 10562	n:100000
FZD1   100000 perm   23 sec   (4332 perm/sec)   p_kst 1.056200e-01   p_cons 1.570000e-03   p_joint 4.230000e-03

Joint ci ratio: 1.676518e-01	ci left: 4.530743e-03	ci right 5.368413e-03	k: 543	n:110000
Cons ci ratio: 2.952433e-01	ci left: 1.364075e-03	ci right 1.844635e-03	k: 175	n:110000
KS ci ratio: 3.438554e-02	ci left: 1.038439e-01	ci right 1.074861e-01	k: 11622	n:110000
FZD1   110000 perm   26 sec   (4255 perm/sec)   p_kst 1.056545e-01   p_cons 1.590909e-03   p_joint 4.936364e-03

Joint ci ratio: 1.767249e-01	ci left: 3.722421e-03	ci right 4.451866e-03	k: 489	n:120000
Cons ci ratio: 2.826740e-01	ci left: 1.374077e-03	ci right 1.833881e-03	k: 191	n:120000
KS ci ratio: 3.297641e-02	ci left: 1.036101e-01	ci right 1.070923e-01	k: 12641	n:120000
FZD1   120000 perm   29 sec   (4186 perm/sec)   p_kst 1.053417e-01   p_cons 1.591667e-03   p_joint 4.075000e-03

Joint ci ratio: 1.865614e-01	ci left: 3.068842e-03	ci right 3.707473e-03	k: 439	n:130000
Cons ci ratio: 2.690061e-01	ci left: 1.411594e-03	ci right 1.857263e-03	k: 211	n:130000
KS ci ratio: 3.171055e-02	ci left: 1.035142e-01	ci right 1.068572e-01	k: 13673	n:130000
FZD1   130000 perm   32 sec   (4121 perm/sec)   p_kst 1.051769e-01   p_cons 1.623077e-03   p_joint 3.376923e-03

Joint ci ratio: 1.650224e-01	ci left: 3.682955e-03	ci right 4.352131e-03	k: 561	n:140000
Cons ci ratio: 2.611223e-01	ci left: 1.397453e-03	ci right 1.823616e-03	k: 224	n:140000
KS ci ratio: 3.056731e-02	ci left: 1.035123e-01	ci right 1.067326e-01	k: 14716	n:140000
FZD1   140000 perm   35 sec   (4056 perm/sec)   p_kst 1.051143e-01   p_cons 1.600000e-03   p_joint 4.007143e-03

Joint ci ratio: 1.758994e-01	ci left: 3.009700e-03	ci right 3.596425e-03	k: 494	n:150000
Cons ci ratio: 2.549686e-01	ci left: 1.372878e-03	ci right 1.780111e-03	k: 235	n:150000
KS ci ratio: 2.957930e-02	ci left: 1.032609e-01	ci right 1.063677e-01	k: 15721	n:150000
FZD1   150000 perm   38 sec   (3994 perm/sec)   p_kst 1.048067e-01   p_cons 1.566667e-03   p_joint 3.293333e-03

Joint ci ratio: 1.711287e-01	ci left: 2.988992e-03	ci right 3.554245e-03	k: 522	n:160000
Cons ci ratio: 2.487265e-01	ci left: 1.357338e-03	ci right 1.748580e-03	k: 247	n:160000
KS ci ratio: 2.864112e-02	ci left: 1.033032e-01	ci right 1.063111e-01	k: 16768	n:160000
FZD1   160000 perm   41 sec   (3932 perm/sec)   p_kst 1.048000e-01   p_cons 1.543750e-03   p_joint 3.262500e-03

Joint ci ratio: 1.367290e-01	ci left: 4.482661e-03	ci right 5.146165e-03	k: 817	n:170000
Cons ci ratio: 2.401618e-01	ci left: 1.376895e-03	ci right 1.758074e-03	k: 265	n:170000
KS ci ratio: 2.775384e-02	ci left: 1.035641e-01	ci right 1.064847e-01	k: 17853	n:170000
FZD1   170000 perm   44 sec   (3868 perm/sec)   p_kst 1.050176e-01   p_cons 1.558824e-03   p_joint 4.805882e-03

Joint ci ratio: 1.463078e-01	ci left: 3.681526e-03	ci right 4.267961e-03	k: 714	n:180000
Cons ci ratio: 2.328359e-01	ci left: 1.389251e-03	ci right 1.760431e-03	k: 282	n:180000
KS ci ratio: 2.695615e-02	ci left: 1.037144e-01	ci right 1.065539e-01	k: 18923	n:180000
FZD1   180000 perm   47 sec   (3809 perm/sec)   p_kst 1.051278e-01   p_cons 1.566667e-03   p_joint 3.966667e-03

Joint ci ratio: 2.099410e-01	ci left: 1.639339e-03	ci right 2.028744e-03	k: 347	n:190000
Cons ci ratio: 2.235448e-01	ci left: 1.435235e-03	ci right 1.801294e-03	k: 306	n:190000
KS ci ratio: 2.623230e-02	ci left: 1.037872e-01	ci right 1.065512e-01	k: 19981	n:190000
FZD1   190000 perm   51 sec   (3751 perm/sec)   p_kst 1.051632e-01   p_cons 1.610526e-03   p_joint 1.826316e-03

Joint ci ratio: 2.058436e-01	ci left: 1.623727e-03	ci right 2.000948e-03	k: 361	n:200000
Cons ci ratio: 2.193022e-01	ci left: 1.420144e-03	ci right 1.774553e-03	k: 318	n:200000
KS ci ratio: 2.551774e-02	ci left: 1.041917e-01	ci right 1.068897e-01	k: 21107	n:200000
FZD1   200000 perm   54 sec   (3695 perm/sec)   p_kst 1.055350e-01   p_cons 1.590000e-03   p_joint 1.805000e-03

Joint ci ratio: 2.019770e-01	ci left: 1.609668e-03	ci right 1.975732e-03	k: 375	n:210000
Cons ci ratio: 2.149673e-01	ci left: 1.411056e-03	ci right 1.755318e-03	k: 331	n:210000
KS ci ratio: 2.492880e-02	ci left: 1.040282e-01	ci right 1.066589e-01	k: 22121	n:210000
FZD1   210000 perm   58 sec   (3642 perm/sec)   p_kst 1.053381e-01   p_cons 1.576190e-03   p_joint 1.785714e-03

Joint ci ratio: 1.943663e-01	ci left: 1.666106e-03	ci right 2.029039e-03	k: 405	n:220000
Cons ci ratio: 2.064326e-01	ci left: 1.467481e-03	ci right 1.809501e-03	k: 359	n:220000
KS ci ratio: 2.433713e-02	ci left: 1.042012e-01	ci right 1.067729e-01	k: 23206	n:220000
FZD1   220000 perm   61 sec   (3590 perm/sec)   p_kst 1.054818e-01   p_cons 1.631818e-03   p_joint 1.840909e-03

Joint ci ratio: 1.123484e-01	ci left: 4.969301e-03	ci right 5.565010e-03	k: 1210	n:230000
Cons ci ratio: 2.006608e-01	ci left: 1.490331e-03	ci right 1.826776e-03	k: 380	n:230000
KS ci ratio: 2.382847e-02	ci left: 1.040225e-01	ci right 1.065353e-01	k: 24213	n:230000
FZD1   230000 perm   65 sec   (3543 perm/sec)   p_kst 1.052739e-01   p_cons 1.652174e-03   p_joint 5.260870e-03

Joint ci ratio: 1.586444e-01	ci left: 2.336167e-03	ci right 2.742662e-03	k: 608	n:240000
Cons ci ratio: 1.963284e-01	ci left: 1.495547e-03	ci right 1.825009e-03	k: 397	n:240000
KS ci ratio: 2.332665e-02	ci left: 1.040498e-01	ci right 1.065097e-01	k: 25266	n:240000
FZD1   240000 perm   69 sec   (3498 perm/sec)   p_kst 1.052750e-01   p_cons 1.654167e-03   p_joint 2.533333e-03

Joint ci ratio: 1.546318e-01	ci left: 2.365706e-03	ci right 2.765965e-03	k: 640	n:250000
Cons ci ratio: 1.918027e-01	ci left: 1.508034e-03	ci right 1.831695e-03	k: 416	n:250000
KS ci ratio: 2.284798e-02	ci left: 1.041352e-01	ci right 1.065459e-01	k: 26334	n:250000
FZD1   250000 perm   72 sec   (3454 perm/sec)   p_kst 1.053360e-01   p_cons 1.664000e-03   p_joint 2.560000e-03

Joint ci ratio: 1.519308e-01	ci left: 2.359786e-03	ci right 2.751434e-03	k: 663	n:260000
Cons ci ratio: 1.886628e-01	ci left: 1.501314e-03	ci right 1.817653e-03	k: 430	n:260000
KS ci ratio: 2.239853e-02	ci left: 1.042069e-01	ci right 1.065712e-01	k: 27400	n:260000
FZD1   260000 perm   76 sec   (3412 perm/sec)   p_kst 1.053846e-01   p_cons 1.653846e-03   p_joint 2.550000e-03

Joint ci ratio: 1.739295e-01	ci left: 1.714454e-03	ci right 2.044534e-03	k: 506	n:270000
Cons ci ratio: 1.836172e-01	ci left: 1.530459e-03	ci right 1.843356e-03	k: 454	n:270000
KS ci ratio: 2.198151e-02	ci left: 1.042147e-01	ci right 1.065346e-01	k: 28450	n:270000
FZD1   270000 perm   80 sec   (3370 perm/sec)   p_kst 1.053704e-01   p_cons 1.681481e-03   p_joint 1.874074e-03

Joint ci ratio: 1.704349e-01	ci left: 1.724992e-03	ci right 2.049743e-03	k: 527	n:280000
Cons ci ratio: 1.800892e-01	ci left: 1.537160e-03	ci right 1.844730e-03	k: 472	n:280000
KS ci ratio: 2.158939e-02	ci left: 1.042009e-01	ci right 1.064787e-01	k: 29494	n:280000
FZD1   280000 perm   84 sec   (3329 perm/sec)   p_kst 1.053357e-01   p_cons 1.685714e-03   p_joint 1.882143e-03

Joint ci ratio: 1.677562e-01	ci left: 1.721649e-03	ci right 2.040161e-03	k: 544	n:290000
Cons ci ratio: 1.784024e-01	ci left: 1.513795e-03	ci right 1.813546e-03	k: 481	n:290000
KS ci ratio: 2.121560e-02	ci left: 1.042057e-01	ci right 1.064436e-01	k: 30543	n:290000
FZD1   290000 perm   88 sec   (3289 perm/sec)   p_kst 1.053207e-01   p_cons 1.658621e-03   p_joint 1.875862e-03

Joint ci ratio: 1.650529e-01	ci left: 1.721762e-03	ci right 2.034653e-03	k: 562	n:300000
Cons ci ratio: 1.751613e-01	ci left: 1.520681e-03	ci right 1.815746e-03	k: 499	n:300000
KS ci ratio: 2.087905e-02	ci left: 1.040445e-01	ci right 1.062431e-01	k: 31542	n:300000
FZD1   300000 perm   92 sec   (3249 perm/sec)   p_kst 1.051400e-01   p_cons 1.663333e-03   p_joint 1.873333e-03

Joint ci ratio: 1.693298e-01	ci left: 1.579668e-03	ci right 1.874933e-03	k: 534	n:310000
Cons ci ratio: 1.730978e-01	ci left: 1.508648e-03	ci right 1.797570e-03	k: 511	n:310000
KS ci ratio: 2.053194e-02	ci left: 1.041317e-01	ci right 1.062951e-01	k: 32615	n:310000
FZD1   310000 perm   97 sec   (3210 perm/sec)   p_kst 1.052097e-01   p_cons 1.648387e-03   p_joint 1.722581e-03

Joint ci ratio: 1.668535e-01	ci left: 1.578200e-03	ci right 1.868443e-03	k: 550	n:320000
Cons ci ratio: 1.709422e-01	ci left: 1.500378e-03	ci right 1.783769e-03	k: 524	n:320000
KS ci ratio: 2.021870e-02	ci left: 1.040550e-01	ci right 1.061834e-01	k: 33637	n:320000
FZD1   320000 perm   101 sec   (3169 perm/sec)   p_kst 1.051156e-01   p_cons 1.637500e-03   p_joint 1.718750e-03

Joint ci ratio: 1.636179e-01	ci left: 1.594286e-03	ci right 1.881243e-03	k: 572	n:330000
Cons ci ratio: 1.671620e-01	ci left: 1.524565e-03	ci right 1.805515e-03	k: 548	n:330000
KS ci ratio: 1.991583e-02	ci left: 1.040164e-01	ci right 1.061118e-01	k: 34670	n:330000
FZD1   330000 perm   105 sec   (3130 perm/sec)   p_kst 1.050606e-01   p_cons 1.660606e-03   p_joint 1.733333e-03

Joint ci ratio: 1.617939e-01	ci left: 1.584073e-03	ci right 1.865705e-03	k: 585	n:340000
Cons ci ratio: 1.644870e-01	ci left: 1.530469e-03	ci right 1.807547e-03	k: 566	n:340000
KS ci ratio: 1.962557e-02	ci left: 1.039861e-01	ci right 1.060500e-01	k: 35705	n:340000
FZD1   340000 perm   110 sec   (3086 perm/sec)   p_kst 1.050147e-01   p_cons 1.664706e-03   p_joint 1.720588e-03

Joint ci ratio: 1.604325e-01	ci left: 1.566232e-03	ci right 1.842123e-03	k: 595	n:350000
Cons ci ratio: 1.633407e-01	ci left: 1.508659e-03	ci right 1.779699e-03	k: 574	n:350000
KS ci ratio: 1.936000e-02	ci left: 1.038383e-01	ci right 1.058711e-01	k: 36698	n:350000
FZD1   350000 perm   115 sec   (3048 perm/sec)   p_kst 1.048514e-01   p_cons 1.640000e-03   p_joint 1.700000e-03

Joint ci ratio: 1.566636e-01	ci left: 1.600088e-03	ci right 1.874699e-03	k: 624	n:360000
Cons ci ratio: 1.607066e-01	ci left: 1.517391e-03	ci right 1.785178e-03	k: 593	n:360000
KS ci ratio: 1.908006e-02	ci left: 1.039423e-01	ci right 1.059474e-01	k: 37779	n:360000
FZD1   360000 perm   120 sec   (3010 perm/sec)   p_kst 1.049417e-01   p_cons 1.647222e-03   p_joint 1.733333e-03

Joint ci ratio: 1.545756e-01	ci left: 1.600999e-03	ci right 1.871765e-03	k: 641	n:370000
Cons ci ratio: 1.588461e-01	ci left: 1.512705e-03	ci right 1.776280e-03	k: 607	n:370000
KS ci ratio: 1.882084e-02	ci left: 1.039521e-01	ci right 1.059298e-01	k: 38827	n:370000
FZD1   370000 perm   124 sec   (2974 perm/sec)   p_kst 1.049378e-01   p_cons 1.640541e-03   p_joint 1.732432e-03

Joint ci ratio: 1.460528e-01	ci left: 1.753894e-03	ci right 2.032737e-03	k: 718	n:380000
Cons ci ratio: 1.561710e-01	ci left: 1.525982e-03	ci right 1.786974e-03	k: 628	n:380000
KS ci ratio: 1.858467e-02	ci left: 1.038331e-01	ci right 1.057835e-01	k: 39826	n:380000
FZD1   380000 perm   129 sec   (2941 perm/sec)   p_kst 1.048053e-01   p_cons 1.652632e-03   p_joint 1.889474e-03

Joint ci ratio: 1.441604e-01	ci left: 1.755871e-03	ci right 2.031101e-03	k: 737	n:390000
Cons ci ratio: 1.538640e-01	ci left: 1.533683e-03	ci right 1.791760e-03	k: 647	n:390000
KS ci ratio: 1.833887e-02	ci left: 1.039068e-01	ci right 1.058325e-01	k: 40898	n:390000
FZD1   390000 perm   134 sec   (2908 perm/sec)   p_kst 1.048667e-01   p_cons 1.658974e-03   p_joint 1.889744e-03

Joint ci ratio: 1.236203e-01	ci left: 2.352454e-03	ci right 2.664822e-03	k: 1002	n:400000
Cons ci ratio: 1.523441e-01	ci left: 1.526596e-03	ci right 1.780711e-03	k: 660	n:400000
KS ci ratio: 1.809799e-02	ci left: 1.040242e-01	ci right 1.059265e-01	k: 41989	n:400000
FZD1   400000 perm   139 sec   (2874 perm/sec)   p_kst 1.049725e-01   p_cons 1.650000e-03   p_joint 2.505000e-03

Joint ci ratio: 1.222272e-01	ci left: 2.349450e-03	ci right 2.657648e-03	k: 1025	n:410000
Cons ci ratio: 1.507564e-01	ci left: 1.522213e-03	ci right 1.772719e-03	k: 674	n:410000
KS ci ratio: 1.786635e-02	ci left: 1.041361e-01	ci right 1.060158e-01	k: 43080	n:410000
FZD1   410000 perm   144 sec   (2841 perm/sec)   p_kst 1.050732e-01   p_cons 1.643902e-03   p_joint 2.500000e-03

Joint ci ratio: 8.036213e-02	ci left: 5.406876e-03	ci right 5.861890e-03	k: 2365	n:420000
Cons ci ratio: 1.482507e-01	ci left: 1.538684e-03	ci right 1.787319e-03	k: 697	n:420000
KS ci ratio: 1.765501e-02	ci left: 1.041195e-01	ci right 1.059764e-01	k: 44119	n:420000
FZD1   420000 perm   149 sec   (2810 perm/sec)   p_kst 1.050452e-01   p_cons 1.659524e-03   p_joint 5.630952e-03

Joint ci ratio: 7.932894e-02	ci left: 5.422443e-03	ci right 5.872629e-03	k: 2427	n:430000
Cons ci ratio: 1.465803e-01	ci left: 1.538738e-03	ci right 1.784335e-03	k: 713	n:430000
KS ci ratio: 1.744861e-02	ci left: 1.041293e-01	ci right 1.059644e-01	k: 45169	n:430000
FZD1   430000 perm   155 sec   (2780 perm/sec)   p_kst 1.050442e-01   p_cons 1.658140e-03   p_joint 5.644186e-03

Joint ci ratio: 1.016206e-01	ci left: 3.199130e-03	ci right 3.543825e-03	k: 1482	n:440000
Cons ci ratio: 1.456664e-01	ci left: 1.523472e-03	ci right 1.764985e-03	k: 722	n:440000
KS ci ratio: 1.724012e-02	ci left: 1.042383e-01	ci right 1.060533e-01	k: 46263	n:440000
FZD1   440000 perm   160 sec   (2750 perm/sec)   p_kst 1.051432e-01   p_cons 1.640909e-03   p_joint 3.368182e-03

Joint ci ratio: 1.169864e-01	ci left: 2.343251e-03	ci right 2.636546e-03	k: 1119	n:450000
Cons ci ratio: 1.439834e-01	ci left: 1.526026e-03	ci right 1.764908e-03	k: 739	n:450000
KS ci ratio: 1.704919e-02	ci left: 1.042297e-01	ci right 1.060242e-01	k: 47306	n:450000
FZD1   450000 perm   165 sec   (2720 perm/sec)   p_kst 1.051244e-01   p_cons 1.642222e-03   p_joint 2.486667e-03

Joint ci ratio: 1.156516e-01	ci left: 2.347189e-03	ci right 2.637395e-03	k: 1145	n:460000
Cons ci ratio: 1.426408e-01	ci left: 1.522195e-03	ci right 1.758066e-03	k: 753	n:460000
KS ci ratio: 1.687149e-02	ci left: 1.041437e-01	ci right 1.059178e-01	k: 48313	n:460000
FZD1   460000 perm   171 sec   (2692 perm/sec)   p_kst 1.050283e-01   p_cons 1.636957e-03   p_joint 2.489130e-03

Joint ci ratio: 1.142638e-01	ci left: 2.355110e-03	ci right 2.642567e-03	k: 1173	n:470000
Cons ci ratio: 1.410594e-01	ci left: 1.524695e-03	ci right 1.758114e-03	k: 770	n:470000
KS ci ratio: 1.668335e-02	ci left: 1.042394e-01	ci right 1.059952e-01	k: 49404	n:470000
FZD1   470000 perm   176 sec   (2664 perm/sec)   p_kst 1.051149e-01   p_cons 1.638298e-03   p_joint 2.495745e-03

Joint ci ratio: 1.129718e-01	ci left: 2.360697e-03	ci right 2.645361e-03	k: 1200	n:480000
Cons ci ratio: 1.396182e-01	ci left: 1.525093e-03	ci right 1.755989e-03	k: 786	n:480000
KS ci ratio: 1.651582e-02	ci left: 1.041673e-01	ci right 1.059041e-01	k: 50416	n:480000
FZD1   480000 perm   182 sec   (2636 perm/sec)   p_kst 1.050333e-01   p_cons 1.637500e-03   p_joint 2.500000e-03

Joint ci ratio: 9.921793e-02	ci left: 3.017912e-03	ci right 3.334946e-03	k: 1555	n:490000
Cons ci ratio: 1.379624e-01	ci left: 1.531398e-03	ci right 1.760273e-03	k: 805	n:490000
KS ci ratio: 1.634507e-02	ci left: 1.041918e-01	ci right 1.059108e-01	k: 51474	n:490000
FZD1   490000 perm   188 sec   (2610 perm/sec)   p_kst 1.050490e-01   p_cons 1.642857e-03   p_joint 3.173469e-03

Joint ci ratio: 9.849354e-02	ci left: 3.002416e-03	ci right 3.315385e-03	k: 1578	n:500000
Cons ci ratio: 1.367799e-01	ci left: 1.527808e-03	ci right 1.754030e-03	k: 819	n:500000
KS ci ratio: 1.618432e-02	ci left: 1.041596e-01	ci right 1.058610e-01	k: 52504	n:500000
FZD1   500000 perm   194 sec   (2583 perm/sec)   p_kst 1.050080e-01   p_cons 1.638000e-03   p_joint 3.156000e-03

Joint ci ratio: 1.098174e-01	ci left: 2.355264e-03	ci right 2.630829e-03	k: 1270	n:510000
Cons ci ratio: 1.353837e-01	ci left: 1.530049e-03	ci right 1.754105e-03	k: 836	n:510000
KS ci ratio: 1.601904e-02	ci left: 1.042361e-01	ci right 1.059213e-01	k: 53589	n:510000
FZD1   510000 perm   199 sec   (2557 perm/sec)   p_kst 1.050765e-01   p_cons 1.639216e-03   p_joint 2.490196e-03

Joint ci ratio: 1.088372e-01	ci left: 2.352991e-03	ci right 2.625676e-03	k: 1293	n:520000
Cons ci ratio: 1.338724e-01	ci left: 1.535933e-03	ci right 1.758140e-03	k: 855	n:520000
KS ci ratio: 1.586487e-02	ci left: 1.042370e-01	ci right 1.059058e-01	k: 54636	n:520000
FZD1   520000 perm   205 sec   (2531 perm/sec)   p_kst 1.050692e-01   p_cons 1.644231e-03   p_joint 2.486538e-03

Joint ci ratio: 1.078418e-01	ci left: 2.352651e-03	ci right 2.622644e-03	k: 1317	n:530000
Cons ci ratio: 1.327912e-01	ci left: 1.532487e-03	ci right 1.752263e-03	k: 869	n:530000
KS ci ratio: 1.572139e-02	ci left: 1.041627e-01	ci right 1.058152e-01	k: 55643	n:530000
FZD1   530000 perm   211 sec   (2506 perm/sec)   p_kst 1.049868e-01   p_cons 1.639623e-03   p_joint 2.484906e-03

Joint ci ratio: 1.068733e-01	ci left: 2.352335e-03	ci right 2.619714e-03	k: 1341	n:540000
Cons ci ratio: 1.315868e-01	ci left: 1.532758e-03	ci right 1.750423e-03	k: 885	n:540000
KS ci ratio: 1.557021e-02	ci left: 1.042297e-01	ci right 1.058671e-01	k: 56725	n:540000
FZD1   540000 perm   218 sec   (2482 perm/sec)   p_kst 1.050463e-01   p_cons 1.638889e-03   p_joint 2.483333e-03

Joint ci ratio: 1.060471e-01	ci left: 2.346730e-03	ci right 2.611282e-03	k: 1362	n:550000
Cons ci ratio: 1.303422e-01	ci left: 1.534786e-03	ci right 1.750518e-03	k: 902	n:550000
KS ci ratio: 1.543137e-02	ci left: 1.041964e-01	ci right 1.058186e-01	k: 57753	n:550000
FZD1   550000 perm   224 sec   (2458 perm/sec)   p_kst 1.050055e-01   p_cons 1.640000e-03   p_joint 2.476364e-03

Joint ci ratio: 9.025609e-02	ci left: 3.205580e-03	ci right 3.510308e-03	k: 1879	n:560000
Cons ci ratio: 1.290620e-01	ci left: 1.538479e-03	ci right 1.752444e-03	k: 920	n:560000
KS ci ratio: 1.529124e-02	ci left: 1.042249e-01	ci right 1.058327e-01	k: 58815	n:560000
FZD1   560000 perm   230 sec   (2434 perm/sec)   p_kst 1.050268e-01   p_cons 1.642857e-03   p_joint 3.355357e-03

Joint ci ratio: 9.011460e-02	ci left: 3.159627e-03	ci right 3.459491e-03	k: 1885	n:570000
Cons ci ratio: 1.281611e-01	ci left: 1.533561e-03	ci right 1.745240e-03	k: 933	n:570000
KS ci ratio: 1.515514e-02	ci left: 1.042490e-01	ci right 1.058427e-01	k: 59875	n:570000
FZD1   570000 perm   236 sec   (2412 perm/sec)   p_kst 1.050439e-01   p_cons 1.636842e-03   p_joint 3.307018e-03

Joint ci ratio: 8.940657e-02	ci left: 3.155714e-03	ci right 3.452730e-03	k: 1915	n:580000
Cons ci ratio: 1.270773e-01	ci left: 1.533826e-03	ci right 1.743616e-03	k: 949	n:580000
KS ci ratio: 1.502054e-02	ci left: 1.042981e-01	ci right 1.058783e-01	k: 60950	n:580000
FZD1   580000 perm   243 sec   (2388 perm/sec)   p_kst 1.050862e-01   p_cons 1.636207e-03   p_joint 3.301724e-03

Joint ci ratio: 8.869210e-02	ci left: 3.153599e-03	ci right 3.447922e-03	k: 1946	n:590000
Cons ci ratio: 1.266127e-01	ci left: 1.519316e-03	ci right 1.726305e-03	k: 956	n:590000
KS ci ratio: 1.489994e-02	ci left: 1.042138e-01	ci right 1.057799e-01	k: 61947	n:590000
FZD1   590000 perm   249 sec   (2366 perm/sec)   p_kst 1.049949e-01   p_cons 1.620339e-03   p_joint 3.298305e-03

Joint ci ratio: 8.792762e-02	ci left: 3.156455e-03	ci right 3.448374e-03	k: 1980	n:600000
Cons ci ratio: 1.256968e-01	ci left: 1.516591e-03	ci right 1.721602e-03	k: 970	n:600000
KS ci ratio: 1.476569e-02	ci left: 1.043417e-01	ci right 1.058955e-01	k: 63070	n:600000
FZD1   600000 perm   256 sec   (2344 perm/sec)   p_kst 1.051167e-01   p_cons 1.616667e-03   p_joint 3.300000e-03

Joint ci ratio: 8.726953e-02	ci left: 3.152812e-03	ci right 3.442101e-03	k: 2010	n:610000
Cons ci ratio: 1.246107e-01	ci left: 1.518725e-03	ci right 1.722120e-03	k: 987	n:610000
KS ci ratio: 1.465210e-02	ci left: 1.042465e-01	ci right 1.057868e-01	k: 64059	n:610000
FZD1   610000 perm   263 sec   (2323 perm/sec)   p_kst 1.050148e-01   p_cons 1.618033e-03   p_joint 3.295082e-03

Joint ci ratio: 8.998321e-02	ci left: 2.914262e-03	ci right 3.190414e-03	k: 1891	n:620000
Cons ci ratio: 1.236755e-01	ci left: 1.517672e-03	ci right 1.719289e-03	k: 1002	n:620000
KS ci ratio: 1.453660e-02	ci left: 1.042123e-01	ci right 1.057398e-01	k: 65084	n:620000
FZD1   620000 perm   269 sec   (2301 perm/sec)   p_kst 1.049742e-01   p_cons 1.616129e-03   p_joint 3.050000e-03

Joint ci ratio: 8.925494e-02	ci left: 2.916107e-03	ci right 3.190081e-03	k: 1922	n:630000
Cons ci ratio: 1.227007e-01	ci left: 1.518196e-03	ci right 1.718177e-03	k: 1018	n:630000
KS ci ratio: 1.441830e-02	ci left: 1.042504e-01	ci right 1.057660e-01	k: 66154	n:630000
FZD1   630000 perm   276 sec   (2280 perm/sec)   p_kst 1.050063e-01   p_cons 1.615873e-03   p_joint 3.050794e-03

Joint ci ratio: 8.852135e-02	ci left: 2.919432e-03	ci right 3.191347e-03	k: 1954	n:640000
Cons ci ratio: 1.219258e-01	ci left: 1.514165e-03	ci right 1.712265e-03	k: 1031	n:640000
KS ci ratio: 1.430047e-02	ci left: 1.043185e-01	ci right 1.058226e-01	k: 67244	n:640000
FZD1   640000 perm   283 sec   (2260 perm/sec)   p_kst 1.050688e-01   p_cons 1.610937e-03   p_joint 3.053125e-03

Joint ci ratio: 8.773914e-02	ci left: 2.927177e-03	ci right 3.197282e-03	k: 1989	n:650000
Cons ci ratio: 1.207608e-01	ci left: 1.520706e-03	ci right 1.717625e-03	k: 1051	n:650000
KS ci ratio: 1.418792e-02	ci left: 1.043524e-01	ci right 1.058450e-01	k: 68313	n:650000
FZD1   650000 perm   290 sec   (2240 perm/sec)   p_kst 1.050969e-01   p_cons 1.616923e-03   p_joint 3.060000e-03

Joint ci ratio: 8.708522e-02	ci left: 2.927287e-03	ci right 3.195286e-03	k: 2019	n:660000
Cons ci ratio: 1.197406e-01	ci left: 1.524118e-03	ci right 1.719693e-03	k: 1069	n:660000
KS ci ratio: 1.407832e-02	ci left: 1.043807e-01	ci right 1.058621e-01	k: 69379	n:660000
FZD1   660000 perm   297 sec   (2220 perm/sec)   p_kst 1.051197e-01   p_cons 1.619697e-03   p_joint 3.059091e-03

Joint ci ratio: 7.175784e-02	ci left: 4.275166e-03	ci right 4.594814e-03	k: 2970	n:670000
Cons ci ratio: 1.186367e-01	ci left: 1.530331e-03	ci right 1.724765e-03	k: 1089	n:670000
KS ci ratio: 1.397965e-02	ci left: 1.042952e-01	ci right 1.057649e-01	k: 70369	n:670000
FZD1   670000 perm   304 sec   (2201 perm/sec)   p_kst 1.050284e-01   p_cons 1.625373e-03   p_joint 4.432836e-03

Joint ci ratio: 8.609034e-02	ci left: 2.908810e-03	ci right 3.171922e-03	k: 2066	n:680000
Cons ci ratio: 1.182044e-01	ci left: 1.519241e-03	ci right 1.711515e-03	k: 1097	n:680000
KS ci ratio: 1.387640e-02	ci left: 1.043017e-01	ci right 1.057605e-01	k: 71420	n:680000
FZD1   680000 perm   311 sec   (2183 perm/sec)   p_kst 1.050294e-01   p_cons 1.613235e-03   p_joint 3.038235e-03

Joint ci ratio: 8.543149e-02	ci left: 2.912036e-03	ci right 3.173323e-03	k: 2098	n:690000
Cons ci ratio: 1.172998e-01	ci left: 1.521136e-03	ci right 1.712073e-03	k: 1114	n:690000
KS ci ratio: 1.377753e-02	ci left: 1.042791e-01	ci right 1.057272e-01	k: 72451	n:690000
FZD1   690000 perm   319 sec   (2165 perm/sec)   p_kst 1.050014e-01   p_cons 1.614493e-03   p_joint 3.040580e-03

Joint ci ratio: 8.486746e-02	ci left: 2.909583e-03	ci right 3.168842e-03	k: 2126	n:700000
Cons ci ratio: 1.165187e-01	ci left: 1.520207e-03	ci right 1.709670e-03	k: 1129	n:700000
KS ci ratio: 1.368054e-02	ci left: 1.042600e-01	ci right 1.056976e-01	k: 73484	n:700000
FZD1   700000 perm   326 sec   (2146 perm/sec)   p_kst 1.049771e-01   p_cons 1.612857e-03   p_joint 3.037143e-03

Joint ci ratio: 6.957827e-02	ci left: 4.295807e-03	ci right 4.606849e-03	k: 3159	n:710000
Cons ci ratio: 1.157531e-01	ci left: 1.519309e-03	ci right 1.707331e-03	k: 1144	n:710000
KS ci ratio: 1.358098e-02	ci left: 1.043047e-01	ci right 1.057323e-01	k: 74562	n:710000
FZD1   710000 perm   334 sec   (2128 perm/sec)   p_kst 1.050169e-01   p_cons 1.611268e-03   p_joint 4.449296e-03

Joint ci ratio: 6.916397e-02	ci left: 4.288005e-03	ci right 4.596559e-03	k: 3197	n:720000
Cons ci ratio: 1.151516e-01	ci left: 1.514392e-03	ci right 1.700766e-03	k: 1156	n:720000
KS ci ratio: 1.348457e-02	ci left: 1.043343e-01	ci right 1.057522e-01	k: 75630	n:720000
FZD1   720000 perm   341 sec   (2111 perm/sec)   p_kst 1.050417e-01   p_cons 1.605556e-03   p_joint 4.440278e-03

Joint ci ratio: 6.878901e-02	ci left: 4.276382e-03	ci right 4.582365e-03	k: 3232	n:730000
Cons ci ratio: 1.143147e-01	ci left: 1.516267e-03	ci right 1.701423e-03	k: 1173	n:730000
KS ci ratio: 1.339505e-02	ci left: 1.042949e-01	ci right 1.057027e-01	k: 76648	n:730000
FZD1   730000 perm   349 sec   (2093 perm/sec)   p_kst 1.049973e-01   p_cons 1.606849e-03   p_joint 4.427397e-03

Joint ci ratio: 6.862074e-02	ci left: 4.239841e-03	ci right 4.542437e-03	k: 3248	n:740000
Cons ci ratio: 1.134482e-01	ci left: 1.519408e-03	ci right 1.703448e-03	k: 1191	n:740000
KS ci ratio: 1.330548e-02	ci left: 1.042822e-01	ci right 1.056803e-01	k: 77685	n:740000
FZD1   740000 perm   356 sec   (2076 perm/sec)   p_kst 1.049797e-01   p_cons 1.609459e-03   p_joint 4.389189e-03

Joint ci ratio: 6.817115e-02	ci left: 4.239663e-03	ci right 4.540185e-03	k: 3291	n:750000
Cons ci ratio: 1.126011e-01	ci left: 1.522471e-03	ci right 1.705413e-03	k: 1209	n:750000
KS ci ratio: 1.321543e-02	ci left: 1.043018e-01	ci right 1.056906e-01	k: 78746	n:750000
FZD1   750000 perm   364 sec   (2060 perm/sec)   p_kst 1.049947e-01   p_cons 1.612000e-03   p_joint 4.388000e-03

Joint ci ratio: 6.774048e-02	ci left: 4.238201e-03	ci right 4.536648e-03	k: 3333	n:760000
Cons ci ratio: 1.120012e-01	ci left: 1.519063e-03	ci right 1.700559e-03	k: 1222	n:760000
KS ci ratio: 1.312893e-02	ci left: 1.042959e-01	ci right 1.056755e-01	k: 79788	n:760000
FZD1   760000 perm   372 sec   (2044 perm/sec)   p_kst 1.049842e-01   p_cons 1.607895e-03   p_joint 4.385526e-03

Joint ci ratio: 6.729786e-02	ci left: 4.239338e-03	ci right 4.535838e-03	k: 3377	n:770000
Cons ci ratio: 1.113658e-01	ci left: 1.517009e-03	ci right 1.697164e-03	k: 1236	n:770000
KS ci ratio: 1.304591e-02	ci left: 1.042643e-01	ci right 1.056348e-01	k: 80810	n:770000
FZD1   770000 perm   380 sec   (2028 perm/sec)   p_kst 1.049481e-01   p_cons 1.605195e-03   p_joint 4.385714e-03

Joint ci ratio: 6.694244e-02	ci left: 4.230366e-03	ci right 4.524615e-03	k: 3413	n:780000
Cons ci ratio: 1.106967e-01	ci left: 1.516257e-03	ci right 1.695170e-03	k: 1251	n:780000
KS ci ratio: 1.296338e-02	ci left: 1.042489e-01	ci right 1.056104e-01	k: 81844	n:780000
FZD1   780000 perm   387 sec   (2014 perm/sec)   p_kst 1.049282e-01   p_cons 1.603846e-03   p_joint 4.375641e-03

Joint ci ratio: 6.649586e-02	ci left: 4.234074e-03	ci right 4.526541e-03	k: 3459	n:790000
Cons ci ratio: 1.098228e-01	ci left: 1.521682e-03	ci right 1.699726e-03	k: 1271	n:790000
KS ci ratio: 1.288145e-02	ci left: 1.042478e-01	ci right 1.056006e-01	k: 82889	n:790000
FZD1   790000 perm   395 sec   (2000 perm/sec)   p_kst 1.049228e-01   p_cons 1.608861e-03   p_joint 4.378481e-03

Joint ci ratio: 6.584154e-02	ci left: 4.265973e-03	ci right 4.557633e-03	k: 3528	n:800000
Cons ci ratio: 1.086747e-01	ci left: 1.535489e-03	ci right 1.713151e-03	k: 1298	n:800000
KS ci ratio: 1.280139e-02	ci left: 1.042418e-01	ci right 1.055861e-01	k: 83930	n:800000
FZD1   800000 perm   403 sec   (1984 perm/sec)   p_kst 1.049125e-01   p_cons 1.622500e-03   p_joint 4.410000e-03

Joint ci ratio: 7.802880e-02	ci left: 2.984942e-03	ci right 3.228510e-03	k: 2515	n:810000
Cons ci ratio: 1.078883e-01	ci left: 1.539354e-03	ci right 1.716092e-03	k: 1317	n:810000
KS ci ratio: 1.271929e-02	ci left: 1.042877e-01	ci right 1.056238e-01	k: 85013	n:810000
FZD1   810000 perm   412 sec   (1968 perm/sec)   p_kst 1.049543e-01   p_cons 1.625926e-03   p_joint 3.104938e-03

Joint ci ratio: 7.746103e-02	ci left: 2.992785e-03	ci right 3.235136e-03	k: 2552	n:820000
Cons ci ratio: 1.069587e-01	ci left: 1.547877e-03	ci right 1.723966e-03	k: 1340	n:820000
KS ci ratio: 1.264351e-02	ci left: 1.042619e-01	ci right 1.055897e-01	k: 86038	n:820000
FZD1   820000 perm   420 sec   (1953 perm/sec)   p_kst 1.049244e-01   p_cons 1.634146e-03   p_joint 3.112195e-03

Joint ci ratio: 6.415269e-02	ci left: 4.334611e-03	ci right 4.623080e-03	k: 3716	n:830000
Cons ci ratio: 1.064048e-01	ci left: 1.545645e-03	ci right 1.720513e-03	k: 1354	n:830000
KS ci ratio: 1.256536e-02	ci left: 1.042920e-01	ci right 1.056119e-01	k: 87109	n:830000
FZD1   830000 perm   428 sec   (1937 perm/sec)   p_kst 1.049506e-01   p_cons 1.631325e-03   p_joint 4.477108e-03

Joint ci ratio: 6.375082e-02	ci left: 4.338067e-03	ci right 4.624891e-03	k: 3763	n:840000
Cons ci ratio: 1.057049e-01	ci left: 1.548105e-03	ci right 1.722027e-03	k: 1372	n:840000
KS ci ratio: 1.249229e-02	ci left: 1.042668e-01	ci right 1.055787e-01	k: 88134	n:840000
FZD1   840000 perm   437 sec   (1924 perm/sec)   p_kst 1.049214e-01   p_cons 1.633333e-03   p_joint 4.479762e-03

Joint ci ratio: 6.334806e-02	ci left: 4.342604e-03	ci right 4.627848e-03	k: 3811	n:850000
Cons ci ratio: 1.050944e-01	ci left: 1.548220e-03	ci right 1.721088e-03	k: 1388	n:850000
KS ci ratio: 1.242102e-02	ci left: 1.042341e-01	ci right 1.055380e-01	k: 89152	n:850000
FZD1   850000 perm   445 sec   (1911 perm/sec)   p_kst 1.048847e-01   p_cons 1.632941e-03   p_joint 4.483529e-03

Joint ci ratio: 6.296103e-02	ci left: 4.345897e-03	ci right 4.629549e-03	k: 3858	n:860000
Cons ci ratio: 1.043456e-01	ci left: 1.552864e-03	ci right 1.724939e-03	k: 1408	n:860000
KS ci ratio: 1.234544e-02	ci left: 1.042856e-01	ci right 1.055822e-01	k: 90242	n:860000
FZD1   860000 perm   453 sec   (1897 perm/sec)   p_kst 1.049326e-01   p_cons 1.637209e-03   p_joint 4.486047e-03

Joint ci ratio: 6.271016e-02	ci left: 4.331016e-03	ci right 4.612529e-03	k: 3889	n:870000
Cons ci ratio: 1.040144e-01	ci left: 1.545090e-03	ci right 1.715727e-03	k: 1417	n:870000
KS ci ratio: 1.227199e-02	ci left: 1.043245e-01	ci right 1.056138e-01	k: 91322	n:870000
FZD1   870000 perm   462 sec   (1884 perm/sec)   p_kst 1.049678e-01   p_cons 1.628736e-03   p_joint 4.470115e-03

Joint ci ratio: 6.267940e-02	ci left: 4.286271e-03	ci right 4.564734e-03	k: 3893	n:880000
Cons ci ratio: 1.034687e-01	ci left: 1.544135e-03	ci right 1.713718e-03	k: 1432	n:880000
KS ci ratio: 1.220248e-02	ci left: 1.043217e-01	ci right 1.056036e-01	k: 92366	n:880000
FZD1   880000 perm   470 sec   (1870 perm/sec)   p_kst 1.049614e-01   p_cons 1.627273e-03   p_joint 4.423864e-03

Joint ci ratio: 6.548473e-02	ci left: 3.878763e-03	ci right 4.142458e-03	k: 3568	n:890000
Cons ci ratio: 1.031457e-01	ci left: 1.536636e-03	ci right 1.704837e-03	k: 1441	n:890000
KS ci ratio: 1.213320e-02	ci left: 1.043336e-01	ci right 1.056083e-01	k: 93423	n:890000
FZD1   890000 perm   479 sec   (1858 perm/sec)   p_kst 1.049697e-01   p_cons 1.619101e-03   p_joint 4.008989e-03

Joint ci ratio: 6.507558e-02	ci left: 3.884850e-03	ci right 4.147247e-03	k: 3613	n:900000
Cons ci ratio: 1.026134e-01	ci left: 1.535800e-03	ci right 1.702989e-03	k: 1456	n:900000
KS ci ratio: 1.206337e-02	ci left: 1.043718e-01	ci right 1.056396e-01	k: 94504	n:900000
FZD1   900000 perm   488 sec   (1846 perm/sec)   p_kst 1.050044e-01   p_cons 1.617778e-03   p_joint 4.014444e-03

Joint ci ratio: 6.476292e-02	ci left: 3.879997e-03	ci right 4.140759e-03	k: 3648	n:910000
Cons ci ratio: 1.020893e-01	ci left: 1.534985e-03	ci right 1.701180e-03	k: 1471	n:910000
KS ci ratio: 1.199431e-02	ci left: 1.044158e-01	ci right 1.056768e-01	k: 95591	n:910000
FZD1   910000 perm   496 sec   (1834 perm/sec)   p_kst 1.050451e-01   p_cons 1.616484e-03   p_joint 4.008791e-03

Joint ci ratio: 7.126186e-02	ci left: 3.161411e-03	ci right 3.396082e-03	k: 3015	n:920000
Cons ci ratio: 1.013346e-01	ci left: 1.541605e-03	ci right 1.707210e-03	k: 1493	n:920000
KS ci ratio: 1.193140e-02	ci left: 1.043808e-01	ci right 1.056347e-01	k: 96606	n:920000
FZD1   920000 perm   505 sec   (1822 perm/sec)   p_kst 1.050065e-01   p_cons 1.622826e-03   p_joint 3.277174e-03

Joint ci ratio: 7.093353e-02	ci left: 3.156989e-03	ci right 3.390208e-03	k: 3043	n:930000
Cons ci ratio: 1.009638e-01	ci left: 1.536557e-03	ci right 1.700980e-03	k: 1504	n:930000
KS ci ratio: 1.186769e-02	ci left: 1.043744e-01	ci right 1.056216e-01	k: 97647	n:930000
FZD1   930000 perm   514 sec   (1810 perm/sec)   p_kst 1.049968e-01   p_cons 1.617204e-03   p_joint 3.272043e-03

Joint ci ratio: 7.252979e-02	ci left: 2.985487e-03	ci right 3.211209e-03	k: 2911	n:940000
Cons ci ratio: 1.003984e-01	ci left: 1.537841e-03	ci right 1.701425e-03	k: 1521	n:940000
KS ci ratio: 1.180520e-02	ci left: 1.043651e-01	ci right 1.056055e-01	k: 98685	n:940000
FZD1   940000 perm   523 sec   (1798 perm/sec)   p_kst 1.049840e-01   p_cons 1.618085e-03   p_joint 3.096809e-03

Joint ci ratio: 6.343832e-02	ci left: 3.876135e-03	ci right 4.131114e-03	k: 3802	n:950000
Cons ci ratio: 1.000051e-01	ci left: 1.533968e-03	ci right 1.696464e-03	k: 1533	n:950000
KS ci ratio: 1.174105e-02	ci left: 1.043979e-01	ci right 1.056319e-01	k: 99763	n:950000
FZD1   950000 perm   532 sec   (1787 perm/sec)   p_kst 1.050137e-01   p_cons 1.613684e-03   p_joint 4.002105e-03

Joint ci ratio: 6.968518e-02	ci left: 3.170903e-03	ci right 3.400860e-03	k: 3153	n:960000
Cons ci ratio: 9.939134e-02	ci left: 1.537287e-03	ci right 1.699077e-03	k: 1552	n:960000
KS ci ratio: 1.167768e-02	ci left: 1.044342e-01	ci right 1.056619e-01	k: 100845	n:960000
FZD1   960000 perm   541 sec   (1775 perm/sec)   p_kst 1.050469e-01   p_cons 1.616667e-03   p_joint 3.284375e-03

Outputting figure to mutsig2_images.part000000000067/FZD1.3_1948_960000_0.10505_0.0016167_0.0032844.png
                gene_name: FZD1
               theta_stop: 0.099 
                    nperm: 960000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0016 
      ci_cons_bounds_left: 0.0015 
     ci_cons_bounds_right: 0.0017 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0032 
    ci_joint_bounds_right: 0.0034 

Current progress: 78 percent done.
FZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.739367e-02	ci left: 5.136554e-01	ci right 5.333309e-01	k: 5235	n:10000
Cons ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
KS ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
FZD2   10000 perm   2 sec   (6023 perm/sec)   p_kst 3.260000e-01   p_cons 5.094000e-01   p_joint 5.235000e-01

Outputting figure to mutsig2_images.part000000000067/FZD2.3_1702_10000_0.326_0.5094_0.5235.png
                gene_name: FZD2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 80 percent done.
FRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
KS ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
FRK   10000 perm   2 sec   (6483 perm/sec)   p_kst 8.216000e-01   p_cons 3.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRK.2_1550_10000_0.8216_0.339_1.png
                gene_name: FRK
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
FRMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
Cons ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
KS ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
FRMD1   10000 perm   2 sec   (6393 perm/sec)   p_kst 9.049000e-01   p_cons 4.363000e-01   p_joint 6.755000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD1.2_1707_10000_0.9049_0.4363_0.6755.png
                gene_name: FRMD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 83 percent done.
FRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
Cons ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
FRS2   10000 perm   2 sec   (6425 perm/sec)   p_kst 7.593000e-01   p_cons 7.047000e-01   p_joint 8.301000e-01

Outputting figure to mutsig2_images.part000000000067/FRS2.2_1547_10000_0.7593_0.7047_0.8301.png
                gene_name: FRS2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 85 percent done.
FST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
FST   10000 perm   1 sec   (6759 perm/sec)   p_kst 9.248000e-01   p_cons 7.098000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FST.2_1065_10000_0.9248_0.7098_1.png
                gene_name: FST
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
Cons ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
FTL   10000 perm   1 sec   (7356 perm/sec)   p_kst 7.360000e-01   p_cons 3.380000e-02   p_joint 5.272000e-01

Joint ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
Cons ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
KS ci ratio: 1.685716e-02	ci left: 7.237890e-01	ci right 7.361441e-01	k: 14600	n:20000
FTL   20000 perm   3 sec   (6360 perm/sec)   p_kst 7.300000e-01   p_cons 1.200000e-02   p_joint 6.650000e-03

Joint ci ratio: 2.627104e-01	ci left: 6.399145e-03	ci right 8.364734e-03	k: 220	n:30000
Cons ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
KS ci ratio: 1.377902e-02	ci left: 7.245016e-01	ci right 7.345872e-01	k: 21887	n:30000
FTL   30000 perm   5 sec   (5998 perm/sec)   p_kst 7.295667e-01   p_cons 1.166667e-02   p_joint 7.333333e-03

Joint ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
Cons ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
KS ci ratio: 1.197586e-02	ci left: 7.237610e-01	ci right 7.325059e-01	k: 29126	n:40000
FTL   40000 perm   7 sec   (5770 perm/sec)   p_kst 7.281500e-01   p_cons 1.182500e-02   p_joint 7.450000e-03

Joint ci ratio: 2.047126e-01	ci left: 6.534589e-03	ci right 8.043464e-03	k: 363	n:50000
Cons ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
KS ci ratio: 1.073509e-02	ci left: 7.233532e-01	ci right 7.311804e-01	k: 36364	n:50000
FTL   50000 perm   9 sec   (5589 perm/sec)   p_kst 7.272800e-01   p_cons 1.142000e-02   p_joint 7.260000e-03

Joint ci ratio: 2.437580e-02	ci left: 2.975138e-01	ci right 3.048721e-01	k: 18071	n:60000
Cons ci ratio: 8.405120e-02	ci left: 3.351102e-02	ci right 3.646751e-02	k: 2098	n:60000
KS ci ratio: 9.825209e-03	ci left: 7.226630e-01	ci right 7.298151e-01	k: 43575	n:60000
FTL   60000 perm   11 sec   (5436 perm/sec)   p_kst 7.262500e-01   p_cons 3.496667e-02   p_joint 3.011833e-01

Outputting figure to mutsig2_images.part000000000067/FTL.2_544_60000_0.72625_0.034967_0.30118.png
                gene_name: FTL
               theta_stop: 0.084 
                    nperm: 60000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.30 

Current progress: 88 percent done.
FUBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
KS ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
FUBP3   10000 perm   2 sec   (6320 perm/sec)   p_kst 4.853000e-01   p_cons 4.046000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000067/FUBP3.2_1795_10000_0.4853_0.4046_0.8048.png
                gene_name: FUBP3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 90 percent done.
FUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
Cons ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
KS ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
FUT1   10000 perm   1 sec   (6799 perm/sec)   p_kst 5.116000e-01   p_cons 1.654000e-01   p_joint 3.672000e-01

Outputting figure to mutsig2_images.part000000000067/FUT1.2_1102_10000_0.5116_0.1654_0.3672.png
                gene_name: FUT1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 92 percent done.
FUT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
Cons ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
KS ci ratio: 6.907414e-02	ci left: 2.351136e-01	ci right 2.520360e-01	k: 2435	n:10000
FUT10   10000 perm   2 sec   (6582 perm/sec)   p_kst 2.435000e-01   p_cons 9.098000e-01   p_joint 6.998000e-01

Outputting figure to mutsig2_images.part000000000067/FUT10.2_1456_10000_0.2435_0.9098_0.6998.png
                gene_name: FUT10
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 93 percent done.
FUT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
KS ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
FUT11   10000 perm   2 sec   (6338 perm/sec)   p_kst 7.035000e-01   p_cons 2.080000e-02   p_joint 4.100000e-02

Joint ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
Cons ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
KS ci ratio: 1.792337e-02	ci left: 6.987761e-01	ci right 7.114642e-01	k: 14103	n:20000
FUT11   20000 perm   4 sec   (5635 perm/sec)   p_kst 7.051500e-01   p_cons 2.050000e-02   p_joint 1.032000e-01

Joint ci ratio: 7.381212e-02	ci left: 8.275265e-02	ci right 8.912780e-02	k: 2577	n:30000
Cons ci ratio: 1.592367e-01	ci left: 1.822150e-02	ci right 2.140579e-02	k: 593	n:30000
KS ci ratio: 1.464330e-02	ci left: 6.997026e-01	ci right 7.100577e-01	k: 21147	n:30000
FUT11   30000 perm   6 sec   (5359 perm/sec)   p_kst 7.049000e-01   p_cons 1.976667e-02   p_joint 8.590000e-02

Joint ci ratio: 6.218115e-02	ci left: 8.755787e-02	ci right 9.320176e-02	k: 3614	n:40000
Cons ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
KS ci ratio: 1.268304e-02	ci left: 7.003529e-01	ci right 7.093173e-01	k: 28194	n:40000
FUT11   40000 perm   8 sec   (5173 perm/sec)   p_kst 7.048500e-01   p_cons 1.942500e-02   p_joint 9.035000e-02

Joint ci ratio: 4.856504e-02	ci left: 1.124733e-01	ci right 1.180914e-01	k: 5763	n:50000
Cons ci ratio: 1.241146e-01	ci left: 1.834473e-02	ci right 2.079150e-02	k: 977	n:50000
KS ci ratio: 1.133128e-02	ci left: 7.013021e-01	ci right 7.093140e-01	k: 35266	n:50000
FUT11   50000 perm   10 sec   (5024 perm/sec)   p_kst 7.053200e-01   p_cons 1.954000e-02   p_joint 1.152600e-01

Joint ci ratio: 4.663554e-02	ci left: 1.028878e-01	ci right 1.078171e-01	k: 6320	n:60000
Cons ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
KS ci ratio: 1.033290e-02	ci left: 7.021022e-01	ci right 7.094112e-01	k: 42346	n:60000
FUT11   60000 perm   12 sec   (4899 perm/sec)   p_kst 7.057667e-01   p_cons 1.940000e-02   p_joint 1.053333e-01

Joint ci ratio: 1.597616e-02	ci left: 4.586724e-01	ci right 4.660735e-01	k: 32366	n:70000
Cons ci ratio: 1.051787e-01	ci left: 1.843281e-02	ci right 2.049301e-02	k: 1361	n:70000
KS ci ratio: 9.552817e-03	ci left: 7.029677e-01	ci right 7.097295e-01	k: 49445	n:70000
FUT11   70000 perm   15 sec   (4788 perm/sec)   p_kst 7.063571e-01   p_cons 1.944286e-02   p_joint 4.623714e-01

Joint ci ratio: 2.196465e-02	ci left: 2.816243e-01	ci right 2.878913e-01	k: 22780	n:80000
Cons ci ratio: 9.846874e-02	ci left: 1.846764e-02	ci right 2.039243e-02	k: 1553	n:80000
KS ci ratio: 8.933581e-03	ci left: 7.032932e-01	ci right 7.096168e-01	k: 56517	n:80000
FUT11   80000 perm   17 sec   (4691 perm/sec)   p_kst 7.064625e-01   p_cons 1.941250e-02   p_joint 2.847500e-01

Outputting figure to mutsig2_images.part000000000067/FUT11.2_1491_80000_0.70646_0.019412_0.28475.png
                gene_name: FUT11
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 95 percent done.
FUT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
Cons ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
KS ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
FUT3   10000 perm   2 sec   (6596 perm/sec)   p_kst 8.294000e-01   p_cons 6.098000e-01   p_joint 8.759000e-01

Outputting figure to mutsig2_images.part000000000067/FUT3.2_1090_10000_0.8294_0.6098_0.8759.png
                gene_name: FUT3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 97 percent done.
FUT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
FUT7   10000 perm   2 sec   (6662 perm/sec)   p_kst 5.800000e-02   p_cons 5.380000e-02   p_joint 1.304000e-01

Joint ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
FUT7   20000 perm   3 sec   (5853 perm/sec)   p_kst 5.840000e-02   p_cons 5.225000e-02   p_joint 3.195000e-02

Joint ci ratio: 1.150836e-01	ci left: 3.508671e-02	ci right 3.940351e-02	k: 1116	n:30000
Cons ci ratio: 9.620999e-02	ci left: 4.990524e-02	ci right 5.498188e-02	k: 1572	n:30000
KS ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
FUT7   30000 perm   5 sec   (5541 perm/sec)   p_kst 5.936667e-02   p_cons 5.240000e-02   p_joint 3.720000e-02

Joint ci ratio: 9.369455e-02	ci left: 3.995732e-02	ci right 4.390953e-02	k: 1676	n:40000
Cons ci ratio: 8.370741e-02	ci left: 4.979525e-02	ci right 5.417008e-02	k: 2078	n:40000
KS ci ratio: 7.778527e-02	ci left: 5.737311e-02	ci right 6.204106e-02	k: 2387	n:40000
FUT7   40000 perm   7 sec   (5337 perm/sec)   p_kst 5.967500e-02   p_cons 5.195000e-02   p_joint 4.190000e-02

Outputting figure to mutsig2_images.part000000000067/FUT7.2_1037_40000_0.059675_0.05195_0.0419.png
                gene_name: FUT7
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 98 percent done.
FXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
KS ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
FXR1   10000 perm   2 sec   (6320 perm/sec)   p_kst 6.781000e-01   p_cons 6.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FXR1.2_1934_10000_0.6781_0.6038_1.png
                gene_name: FXR1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000067
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 67 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 4421971: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000068> was used as the working directory.
Started at Wed Oct 24 17:47:50 2012
Results reported at Wed Oct 24 18:00:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000068.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000068.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 68  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000068.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    784.92 sec.
    Max Memory :      5356 MB
    Max Swap   :      7953 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
68
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 68
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 68: processing genes 6062 - 6152
Calculating significance of each gene.
Using projection method.
6062	FZD3	1
6063	FZD4	1
6064	FZD5	9.458101e-01
6065	FZD6	1
6066	FZD7	1
6067	FZD8	1
6068	FZD9	8.710426e-01
6069	FZR1	6.073335e-01
6070	G0S2	1
6071	G2E3	7.581826e-01
6072	G3BP1	4.501801e-03
6073	G3BP2	4.968776e-01
6074	G6PC	9.203770e-01
6075	G6PC2	5.658054e-01
6076	G6PC3	8.400194e-01
6077	G6PD	8.634226e-01
6078	GAA	9.808274e-01
6079	GAB1	9.298116e-01
6080	GAB2	9.933961e-01
6081	GAB3	3.889508e-01
6082	GAB4	1
6083	GABARAP	1
6084	GABARAPL1	2.333902e-01
6085	GABARAPL2	1
6086	GABBR1	1
6087	GABBR2	1
6088	GABPA	8.992392e-01
6089	GABPB1	6.822735e-01
6090	GABPB2	1
6091	GABRA1	5.413300e-01
6092	GABRA2	4.627789e-02
6093	GABRA3	9.513072e-01
6094	GABRA4	7.756044e-02
6095	GABRA5	8.117332e-03
6096	GABRA6	9.310014e-01
6097	GABRB1	1.313998e-02
6098	GABRB2	4.999692e-01
6099	GABRB3	1.659981e-08
6100	GABRD	9.263199e-01
6101	GABRE	7.232625e-01
6102	GABRG1	7.657165e-02
6103	GABRG2	1.645275e-01
6104	GABRG3	4.167279e-01
6105	GABRP	4.367150e-01
6106	GABRQ	1
6107	GABRR1	1
6108	GABRR2	5.420874e-01
6109	GABRR3	1
6110	GAD1	7.163277e-01
6111	GAD2	5.014795e-01
6112	GADD45A	4.828856e-01
6113	GADD45B	1
6114	GADD45G	1
6115	GADD45GIP1	1
6116	GADL1	5.752868e-01
6117	GAGE1	1
6118	GAGE10	1
6119	GAGE13	1
6120	GAK	9.113141e-01
6121	GAL	4.215662e-01
6122	GAL3ST1	5.116727e-01
6123	GAL3ST2	1.117775e-01
6124	GAL3ST3	9.895307e-03
6125	GAL3ST4	9.004754e-01
6126	GALC	2.507445e-01
6127	GALE	8.137965e-01
6128	GALK1	1
6129	GALK2	7.445913e-01
6130	GALM	1
6131	GALNS	1
6132	GALNT1	5.709225e-01
6133	GALNT10	9.439322e-01
6134	GALNT11	1
6135	GALNT12	5.466556e-01
6136	GALNT13	3.535339e-04
6137	GALNT14	9.191091e-01
6138	GALNT2	8.411844e-01
6139	GALNT3	3.817294e-01
6140	GALNT4	4.862520e-01
6141	GALNT5	6.434220e-01
6142	GALNT6	1
6143	GALNT7	7.730653e-01
6144	GALNT8	2.224982e-01
6145	GALNT9	1
6146	GALNTL1	8.217185e-01
6147	GALNTL2	2.283388e-01
6148	GALNTL4	7.346414e-01
6149	GALNTL5	9.442654e-02
6150	GALNTL6	6.344001e-01
6151	GALP	1
6152	GALR1	6.853572e-01
Done

Running MutSig 2:
Scatter job 68: processing genes 6062 - 6152
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GABRB3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
Cons ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
KS ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
GABRB3   10000 perm   2 sec   (4838 perm/sec)   p_kst 1.510000e-02   p_cons 3.925000e-01   p_joint 7.820000e-02

Joint ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
Cons ci ratio: 3.489315e-02	ci left: 3.800921e-01	ci right 3.936408e-01	k: 7737	n:20000
KS ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
GABRB3   20000 perm   7 sec   (3048 perm/sec)   p_kst 1.490000e-02   p_cons 3.868500e-01   p_joint 3.380000e-02

Joint ci ratio: 1.104896e-01	ci left: 3.803765e-02	ci right 4.251860e-02	k: 1207	n:30000
Cons ci ratio: 2.736392e-02	ci left: 4.006019e-01	ci right 4.117496e-01	k: 12185	n:30000
KS ci ratio: 1.855002e-01	ci left: 1.330502e-02	ci right 1.605681e-02	k: 439	n:30000
GABRB3   30000 perm   9 sec   (3300 perm/sec)   p_kst 1.463333e-02   p_cons 4.061667e-01   p_joint 4.023333e-02

Joint ci ratio: 1.009877e-01	ci left: 3.446392e-02	ci right 3.815379e-02	k: 1451	n:40000
Cons ci ratio: 2.377412e-02	ci left: 3.998096e-01	ci right 4.094542e-01	k: 16185	n:40000
KS ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
GABRB3   40000 perm   12 sec   (3433 perm/sec)   p_kst 1.450000e-02   p_cons 4.046250e-01   p_joint 3.627500e-02

Joint ci ratio: 9.248965e-02	ci left: 3.307375e-02	ci right 3.630056e-02	k: 1733	n:50000
Cons ci ratio: 2.127877e-02	ci left: 3.999941e-01	ci right 4.086170e-01	k: 20215	n:50000
KS ci ratio: 1.451350e-01	ci left: 1.333547e-02	ci right 1.544146e-02	k: 718	n:50000
GABRB3   50000 perm   14 sec   (3491 perm/sec)   p_kst 1.436000e-02   p_cons 4.043000e-01   p_joint 3.466000e-02

Joint ci ratio: 8.959655e-02	ci left: 2.952976e-02	ci right 3.231586e-02	k: 1854	n:60000
Cons ci ratio: 1.944171e-02	ci left: 3.999536e-01	ci right 4.078224e-01	k: 24233	n:60000
KS ci ratio: 1.317787e-01	ci left: 1.357483e-02	ci right 1.550588e-02	k: 871	n:60000
GABRB3   60000 perm   17 sec   (3506 perm/sec)   p_kst 1.451667e-02   p_cons 4.038833e-01   p_joint 3.090000e-02

Joint ci ratio: 8.865353e-02	ci left: 2.596553e-02	ci right 2.838816e-02	k: 1901	n:70000
Cons ci ratio: 1.799951e-02	ci left: 4.002477e-01	ci right 4.075317e-01	k: 28272	n:70000
KS ci ratio: 1.207648e-01	ci left: 1.393235e-02	ci right 1.573677e-02	k: 1037	n:70000
GABRB3   70000 perm   20 sec   (3508 perm/sec)   p_kst 1.481429e-02   p_cons 4.038857e-01   p_joint 2.715714e-02

Joint ci ratio: 7.697433e-02	ci left: 3.019002e-02	ci right 3.261912e-02	k: 2511	n:80000
Cons ci ratio: 1.682389e-02	ci left: 4.008591e-01	ci right 4.076728e-01	k: 32341	n:80000
KS ci ratio: 1.128342e-01	ci left: 1.402324e-02	ci right 1.571221e-02	k: 1188	n:80000
GABRB3   80000 perm   23 sec   (3506 perm/sec)   p_kst 1.485000e-02   p_cons 4.042625e-01   p_joint 3.138750e-02

Joint ci ratio: 7.358639e-02	ci left: 2.944072e-02	ci right 3.170078e-02	k: 2750	n:90000
Cons ci ratio: 1.624257e-02	ci left: 3.896961e-01	ci right 3.960886e-01	k: 35360	n:90000
KS ci ratio: 1.062051e-01	ci left: 1.411859e-02	ci right 1.571290e-02	k: 1341	n:90000
GABRB3   90000 perm   26 sec   (3487 perm/sec)   p_kst 1.490000e-02   p_cons 3.928889e-01   p_joint 3.055556e-02

Joint ci ratio: 7.042656e-02	ci left: 2.899067e-02	ci right 3.111670e-02	k: 3004	n:100000
Cons ci ratio: 1.541616e-02	ci left: 3.896414e-01	ci right 3.957048e-01	k: 39267	n:100000
KS ci ratio: 1.002820e-01	ci left: 1.429473e-02	ci right 1.581359e-02	k: 1504	n:100000
GABRB3   100000 perm   29 sec   (3464 perm/sec)   p_kst 1.504000e-02   p_cons 3.926700e-01   p_joint 3.004000e-02

Joint ci ratio: 6.949815e-02	ci left: 2.713131e-02	ci right 2.909367e-02	k: 3091	n:110000
Cons ci ratio: 1.470147e-02	ci left: 3.896944e-01	ci right 3.954749e-01	k: 43184	n:110000
KS ci ratio: 9.560048e-02	ci left: 1.433433e-02	ci right 1.578231e-02	k: 1655	n:110000
GABRB3   110000 perm   32 sec   (3439 perm/sec)   p_kst 1.504545e-02   p_cons 3.925818e-01   p_joint 2.810000e-02

Outputting figure to mutsig2_images.part000000000068/GABRB3.17_1542_110000_0.015045_0.39258_0.0281.png
                gene_name: GABRB3
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 2 percent done.
GALNT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
KS ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
GALNT13   10000 perm   2 sec   (4807 perm/sec)   p_kst 9.387000e-01   p_cons 9.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT13.15_1715_10000_0.9387_0.9224_1.png
                gene_name: GALNT13
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
GABRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
GABRA2   10000 perm   2 sec   (5326 perm/sec)   p_kst 7.685000e-01   p_cons 8.400000e-01   p_joint 8.381000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA2.14_1392_10000_0.7685_0.84_0.8381.png
                gene_name: GABRA2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 5 percent done.
GABRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
GABRA5   10000 perm   2 sec   (5122 perm/sec)   p_kst 3.600000e-03   p_cons 7.788000e-01   p_joint 7.200000e-03

Joint ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
Cons ci ratio: 1.512997e-02	ci left: 7.645576e-01	ci right 7.762637e-01	k: 15409	n:20000
KS ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
GABRA5   20000 perm   4 sec   (4573 perm/sec)   p_kst 3.850000e-03   p_cons 7.704500e-01   p_joint 1.395000e-02

Joint ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
Cons ci ratio: 1.173672e-02	ci left: 7.833977e-01	ci right 7.926798e-01	k: 23642	n:30000
KS ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
GABRA5   30000 perm   7 sec   (4393 perm/sec)   p_kst 4.700000e-03   p_cons 7.880667e-01   p_joint 2.776667e-02

Joint ci ratio: 1.604635e-01	ci left: 1.351942e-02	ci right 1.590179e-02	k: 587	n:40000
Cons ci ratio: 1.017239e-02	ci left: 7.837599e-01	ci right 7.917983e-01	k: 31512	n:40000
KS ci ratio: 2.814827e-01	ci left: 4.146336e-03	ci right 5.527061e-03	k: 192	n:40000
GABRA5   40000 perm   9 sec   (4240 perm/sec)   p_kst 4.800000e-03   p_cons 7.878000e-01   p_joint 1.467500e-02

Joint ci ratio: 1.230285e-01	ci left: 1.867441e-02	ci right 2.114177e-02	k: 994	n:50000
Cons ci ratio: 9.084305e-03	ci left: 7.847127e-01	ci right 7.918938e-01	k: 39416	n:50000
KS ci ratio: 2.529545e-01	ci left: 4.175605e-03	ci right 5.402977e-03	k: 238	n:50000
GABRA5   50000 perm   12 sec   (4130 perm/sec)   p_kst 4.760000e-03   p_cons 7.883200e-01   p_joint 1.988000e-02

Joint ci ratio: 1.301230e-01	ci left: 1.392965e-02	ci right 1.588435e-02	k: 893	n:60000
Cons ci ratio: 8.275893e-03	ci left: 7.857130e-01	ci right 7.922591e-01	k: 47340	n:60000
KS ci ratio: 2.304313e-01	ci left: 4.246993e-03	ci right 5.368398e-03	k: 287	n:60000
GABRA5   60000 perm   15 sec   (4043 perm/sec)   p_kst 4.783333e-03   p_cons 7.890000e-01   p_joint 1.488333e-02

Joint ci ratio: 1.278935e-01	ci left: 1.239527e-02	ci right 1.410257e-02	k: 926	n:70000
Cons ci ratio: 7.656724e-03	ci left: 7.861881e-01	ci right 7.922451e-01	k: 55246	n:70000
KS ci ratio: 2.102175e-01	ci left: 4.423254e-03	ci right 5.475570e-03	k: 345	n:70000
GABRA5   70000 perm   18 sec   (3969 perm/sec)   p_kst 4.928571e-03   p_cons 7.892286e-01   p_joint 1.322857e-02

Joint ci ratio: 1.169459e-01	ci left: 1.303944e-02	ci right 1.467110e-02	k: 1107	n:80000
Cons ci ratio: 7.362083e-03	ci left: 7.770377e-01	ci right 7.827919e-01	k: 62394	n:80000
KS ci ratio: 1.957543e-01	ci left: 4.499226e-03	ci right 5.487197e-03	k: 398	n:80000
GABRA5   80000 perm   21 sec   (3897 perm/sec)   p_kst 4.975000e-03   p_cons 7.799250e-01   p_joint 1.383750e-02

Joint ci ratio: 1.101905e-01	ci left: 1.310202e-02	ci right 1.464066e-02	k: 1247	n:90000
Cons ci ratio: 7.207687e-03	ci left: 7.639339e-01	ci right 7.694711e-01	k: 69004	n:90000
KS ci ratio: 1.849476e-01	ci left: 4.507247e-03	ci right 5.436212e-03	k: 446	n:90000
GABRA5   90000 perm   23 sec   (3837 perm/sec)   p_kst 4.955556e-03   p_cons 7.667111e-01   p_joint 1.385556e-02

Joint ci ratio: 1.115420e-01	ci left: 1.151906e-02	ci right 1.288946e-02	k: 1219	n:100000
Cons ci ratio: 6.835922e-03	ci left: 7.641764e-01	ci right 7.694281e-01	k: 76681	n:100000
KS ci ratio: 1.752206e-01	ci left: 4.543552e-03	ci right 5.425536e-03	k: 497	n:100000
GABRA5   100000 perm   27 sec   (3773 perm/sec)   p_kst 4.970000e-03   p_cons 7.668100e-01   p_joint 1.219000e-02

Joint ci ratio: 1.309396e-01	ci left: 7.552371e-03	ci right 8.619264e-03	k: 888	n:110000
Cons ci ratio: 6.095450e-03	ci left: 7.874895e-01	ci right 7.923133e-01	k: 86890	n:110000
KS ci ratio: 1.664264e-01	ci left: 4.600444e-03	ci right 5.444160e-03	k: 551	n:110000
GABRA5   110000 perm   30 sec   (3710 perm/sec)   p_kst 5.009091e-03   p_cons 7.899091e-01   p_joint 8.072727e-03

Joint ci ratio: 1.248998e-01	ci left: 7.632900e-03	ci right 8.657750e-03	k: 976	n:120000
Cons ci ratio: 5.839185e-03	ci left: 7.874082e-01	ci right 7.920278e-01	k: 94767	n:120000
KS ci ratio: 1.576634e-01	ci left: 4.720818e-03	ci right 5.536713e-03	k: 614	n:120000
GABRA5   120000 perm   33 sec   (3654 perm/sec)   p_kst 5.116667e-03   p_cons 7.897250e-01   p_joint 8.133333e-03

Joint ci ratio: 1.012443e-01	ci left: 1.082249e-02	ci right 1.198408e-02	k: 1481	n:130000
Cons ci ratio: 5.694110e-03	ci left: 7.825018e-01	ci right 7.869778e-01	k: 102017	n:130000
KS ci ratio: 1.588669e-01	ci left: 4.291113e-03	ci right 5.038939e-03	k: 605	n:130000
GABRA5   130000 perm   36 sec   (3600 perm/sec)   p_kst 4.653846e-03   p_cons 7.847462e-01   p_joint 1.139231e-02

Joint ci ratio: 1.028764e-01	ci left: 9.735947e-03	ci right 1.079877e-02	k: 1436	n:140000
Cons ci ratio: 5.474156e-03	ci left: 7.833762e-01	ci right 7.876834e-01	k: 109975	n:140000
KS ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
GABRA5   140000 perm   39 sec   (3552 perm/sec)   p_kst 4.735714e-03   p_cons 7.855357e-01   p_joint 1.025714e-02

Joint ci ratio: 1.022672e-01	ci left: 9.203675e-03	ci right 1.020208e-02	k: 1454	n:150000
Cons ci ratio: 5.285226e-03	ci left: 7.836614e-01	ci right 7.878208e-01	k: 117862	n:150000
KS ci ratio: 1.463523e-01	ci left: 4.411531e-03	ci right 5.114489e-03	k: 713	n:150000
GABRA5   150000 perm   43 sec   (3501 perm/sec)   p_kst 4.753333e-03   p_cons 7.857467e-01   p_joint 9.693333e-03

Joint ci ratio: 9.931103e-02	ci left: 9.164572e-03	ci right 1.012832e-02	k: 1542	n:160000
Cons ci ratio: 5.116967e-03	ci left: 7.837564e-01	ci right 7.877833e-01	k: 125724	n:160000
KS ci ratio: 1.412955e-01	ci left: 4.449123e-03	ci right 5.131512e-03	k: 765	n:160000
GABRA5   160000 perm   46 sec   (3455 perm/sec)   p_kst 4.781250e-03   p_cons 7.857750e-01   p_joint 9.637500e-03

Joint ci ratio: 9.338398e-02	ci left: 9.779504e-03	ci right 1.074319e-02	k: 1743	n:170000
Cons ci ratio: 4.967114e-03	ci left: 7.836177e-01	ci right 7.875255e-01	k: 133548	n:170000
KS ci ratio: 1.367290e-01	ci left: 4.482661e-03	ci right 5.146165e-03	k: 817	n:170000
GABRA5   170000 perm   50 sec   (3411 perm/sec)   p_kst 4.805882e-03   p_cons 7.855765e-01   p_joint 1.025294e-02

Joint ci ratio: 9.101695e-02	ci left: 9.735514e-03	ci right 1.066925e-02	k: 1835	n:180000
Cons ci ratio: 4.832401e-03	ci left: 7.833066e-01	ci right 7.871065e-01	k: 141338	n:180000
KS ci ratio: 1.321215e-01	ci left: 4.545021e-03	ci right 5.193306e-03	k: 875	n:180000
GABRA5   180000 perm   53 sec   (3369 perm/sec)   p_kst 4.861111e-03   p_cons 7.852111e-01   p_joint 1.019444e-02

Joint ci ratio: 9.079230e-02	ci left: 9.274453e-03	ci right 1.016165e-02	k: 1845	n:190000
Cons ci ratio: 4.703228e-03	ci left: 7.833781e-01	ci right 7.870764e-01	k: 149194	n:190000
KS ci ratio: 1.279503e-01	ci left: 4.601152e-03	ci right 5.235151e-03	k: 933	n:190000
GABRA5   190000 perm   57 sec   (3328 perm/sec)   p_kst 4.910526e-03   p_cons 7.852316e-01   p_joint 9.710526e-03

Joint ci ratio: 9.149232e-02	ci left: 8.678686e-03	ci right 9.515636e-03	k: 1818	n:200000
Cons ci ratio: 4.583481e-03	ci left: 7.834737e-01	ci right 7.870780e-01	k: 157056	n:200000
KS ci ratio: 1.252338e-01	ci left: 4.569598e-03	ci right 5.184888e-03	k: 974	n:200000
GABRA5   200000 perm   61 sec   (3286 perm/sec)   p_kst 4.870000e-03   p_cons 7.852800e-01   p_joint 9.090000e-03

Joint ci ratio: 9.036673e-02	ci left: 8.479442e-03	ci right 9.286583e-03	k: 1864	n:210000
Cons ci ratio: 4.474333e-03	ci left: 7.834181e-01	ci right 7.869359e-01	k: 164888	n:210000
KS ci ratio: 1.220809e-01	ci left: 4.587346e-03	ci right 5.188351e-03	k: 1025	n:210000
GABRA5   210000 perm   65 sec   (3246 perm/sec)   p_kst 4.880952e-03   p_cons 7.851810e-01   p_joint 8.876190e-03

Joint ci ratio: 9.102726e-02	ci left: 7.978417e-03	ci right 8.743712e-03	k: 1838	n:220000
Cons ci ratio: 4.372216e-03	ci left: 7.834004e-01	ci right 7.868376e-01	k: 172727	n:220000
KS ci ratio: 1.186576e-01	ci left: 4.643354e-03	ci right 5.233442e-03	k: 1085	n:220000
GABRA5   220000 perm   69 sec   (3206 perm/sec)   p_kst 4.931818e-03   p_cons 7.851227e-01   p_joint 8.354545e-03

Joint ci ratio: 9.124422e-02	ci left: 7.597472e-03	ci right 8.328053e-03	k: 1830	n:230000
Cons ci ratio: 4.273864e-03	ci left: 7.836161e-01	ci right 7.869767e-01	k: 180619	n:230000
KS ci ratio: 1.159655e-01	ci left: 4.656704e-03	ci right 5.234142e-03	k: 1136	n:230000
GABRA5   230000 perm   73 sec   (3165 perm/sec)   p_kst 4.939130e-03   p_cons 7.853000e-01   p_joint 7.956522e-03

Joint ci ratio: 7.479093e-02	ci left: 1.089322e-02	ci right 1.174365e-02	k: 2715	n:240000
Cons ci ratio: 4.182172e-03	ci left: 7.837896e-01	ci right 7.870785e-01	k: 188505	n:240000
KS ci ratio: 1.134007e-01	ci left: 4.673128e-03	ci right 5.238929e-03	k: 1188	n:240000
GABRA5   240000 perm   77 sec   (3127 perm/sec)   p_kst 4.950000e-03   p_cons 7.854375e-01   p_joint 1.131250e-02

Joint ci ratio: 6.983054e-02	ci left: 1.201311e-02	ci right 1.288625e-02	k: 3111	n:250000
Cons ci ratio: 4.096964e-03	ci left: 7.838817e-01	ci right 7.871037e-01	k: 196374	n:250000
KS ci ratio: 1.110439e-01	ci left: 4.684478e-03	ci right 5.239094e-03	k: 1239	n:250000
GABRA5   250000 perm   81 sec   (3091 perm/sec)   p_kst 4.956000e-03   p_cons 7.854960e-01   p_joint 1.244400e-02

Joint ci ratio: 8.025611e-02	ci left: 8.727245e-03	ci right 9.460684e-03	k: 2363	n:260000
Cons ci ratio: 4.072281e-03	ci left: 7.792934e-01	ci right 7.824772e-01	k: 203031	n:260000
KS ci ratio: 1.087013e-01	ci left: 4.706294e-03	ci right 5.250985e-03	k: 1293	n:260000
GABRA5   260000 perm   85 sec   (3057 perm/sec)   p_kst 4.973077e-03   p_cons 7.808885e-01   p_joint 9.088462e-03

Joint ci ratio: 8.099881e-02	ci left: 8.251512e-03	ci right 8.951690e-03	k: 2321	n:270000
Cons ci ratio: 3.997493e-03	ci left: 7.792087e-01	ci right 7.823334e-01	k: 210809	n:270000
KS ci ratio: 1.068200e-01	ci left: 4.697764e-03	ci right 5.231466e-03	k: 1339	n:270000
GABRA5   270000 perm   89 sec   (3023 perm/sec)   p_kst 4.959259e-03   p_cons 7.807741e-01   p_joint 8.596296e-03

Joint ci ratio: 7.540064e-02	ci left: 9.200071e-03	ci right 9.924420e-03	k: 2676	n:280000
Cons ci ratio: 3.927661e-03	ci left: 7.790446e-01	ci right 7.821139e-01	k: 218563	n:280000
KS ci ratio: 1.046920e-01	ci left: 4.721222e-03	ci right 5.246247e-03	k: 1394	n:280000
GABRA5   280000 perm   94 sec   (2991 perm/sec)   p_kst 4.978571e-03   p_cons 7.805821e-01   p_joint 9.557143e-03

Joint ci ratio: 7.345796e-02	ci left: 9.366782e-03	ci right 1.008445e-02	k: 2819	n:290000
Cons ci ratio: 3.805875e-03	ci left: 7.838252e-01	ci right 7.868174e-01	k: 227744	n:290000
KS ci ratio: 1.032244e-01	ci left: 4.692763e-03	ci right 5.206863e-03	k: 1434	n:290000
GABRA5   290000 perm   98 sec   (2957 perm/sec)   p_kst 4.944828e-03   p_cons 7.853241e-01   p_joint 9.720690e-03

Joint ci ratio: 7.346999e-02	ci left: 9.054503e-03	ci right 9.748357e-03	k: 2819	n:300000
Cons ci ratio: 3.742100e-03	ci left: 7.838329e-01	ci right 7.867749e-01	k: 235592	n:300000
KS ci ratio: 1.016437e-01	ci left: 4.682493e-03	ci right 5.187144e-03	k: 1479	n:300000
GABRA5   300000 perm   103 sec   (2924 perm/sec)   p_kst 4.930000e-03   p_cons 7.853067e-01   p_joint 9.396667e-03

Joint ci ratio: 7.292223e-02	ci left: 8.898567e-03	ci right 9.575171e-03	k: 2862	n:310000
Cons ci ratio: 3.679983e-03	ci left: 7.839732e-01	ci right 7.868667e-01	k: 243481	n:310000
KS ci ratio: 1.001996e-01	ci left: 4.666651e-03	ci right 5.162029e-03	k: 1522	n:310000
GABRA5   310000 perm   107 sec   (2892 perm/sec)   p_kst 4.909677e-03   p_cons 7.854226e-01   p_joint 9.232258e-03

Joint ci ratio: 7.237377e-02	ci left: 8.755465e-03	ci right 9.415971e-03	k: 2906	n:320000
Cons ci ratio: 3.624351e-03	ci left: 7.837792e-01	ci right 7.866281e-01	k: 251266	n:320000
KS ci ratio: 9.856263e-02	ci left: 4.676233e-03	ci right 5.164049e-03	k: 1573	n:320000
GABRA5   320000 perm   112 sec   (2861 perm/sec)   p_kst 4.915625e-03   p_cons 7.852062e-01   p_joint 9.081250e-03

Outputting figure to mutsig2_images.part000000000068/GABRA5.14_1425_320000_0.0049156_0.78521_0.0090813.png
                gene_name: GABRA5
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.0049 
        ci_ks_bounds_left: 0.0047 
       ci_ks_bounds_right: 0.0052 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0094 

Current progress: 6 percent done.
GABRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.257961e-02	ci left: 5.816898e-01	ci right 6.010569e-01	k: 5914	n:10000
Cons ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
KS ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
GABRG1   10000 perm   2 sec   (4477 perm/sec)   p_kst 3.534000e-01   p_cons 4.967000e-01   p_joint 5.914000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG1.14_1434_10000_0.3534_0.4967_0.5914.png
                gene_name: GABRG1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 8 percent done.
GABRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GABRA6   10000 perm   2 sec   (5168 perm/sec)   p_kst 1   p_cons 2.060000e-01   p_joint 4.201000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA6.12_1398_10000_1_0.206_0.4201.png
                gene_name: GABRA6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 10 percent done.
GALNTL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
Cons ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
KS ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
GALNTL6   10000 perm   2 sec   (4861 perm/sec)   p_kst 4.570000e-02   p_cons 5.830000e-01   p_joint 1.402000e-01

Joint ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
Cons ci ratio: 2.198113e-02	ci left: 6.071115e-01	ci right 6.206554e-01	k: 12278	n:20000
KS ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
GALNTL6   20000 perm   4 sec   (4458 perm/sec)   p_kst 4.600000e-02   p_cons 6.139000e-01   p_joint 9.485000e-02

Joint ci ratio: 7.234807e-02	ci left: 8.589948e-02	ci right 9.238034e-02	k: 2673	n:30000
Cons ci ratio: 1.802742e-02	ci left: 6.062580e-01	ci right 6.173203e-01	k: 18354	n:30000
KS ci ratio: 1.025218e-01	ci left: 4.407958e-02	ci right 4.887540e-02	k: 1393	n:30000
GALNTL6   30000 perm   7 sec   (4302 perm/sec)   p_kst 4.643333e-02   p_cons 6.118000e-01   p_joint 8.910000e-02

Joint ci ratio: 6.462872e-02	ci left: 8.149646e-02	ci right 8.696407e-02	k: 3368	n:40000
Cons ci ratio: 1.570616e-02	ci left: 6.041476e-01	ci right 6.137366e-01	k: 24358	n:40000
KS ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
GALNTL6   40000 perm   10 sec   (4195 perm/sec)   p_kst 4.595000e-02   p_cons 6.089500e-01   p_joint 8.420000e-02

Outputting figure to mutsig2_images.part000000000068/GALNTL6.12_1854_40000_0.04595_0.60895_0.0842.png
                gene_name: GALNTL6
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 11 percent done.
GABRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.684256e-02	ci left: 3.130436e-01	ci right 3.314601e-01	k: 3222	n:10000
Cons ci ratio: 3.291093e-02	ci left: 5.767739e-01	ci right 5.961757e-01	k: 5865	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
GABRB1   10000 perm   2 sec   (5340 perm/sec)   p_kst 1.908000e-01   p_cons 5.865000e-01   p_joint 3.222000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB1.11_1461_10000_0.1908_0.5865_0.3222.png
                gene_name: GABRB1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 13 percent done.
GABRQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
GABRQ   10000 perm   2 sec   (5488 perm/sec)   p_kst 1.392000e-01   p_cons 9.911000e-01   p_joint 2.805000e-01

Outputting figure to mutsig2_images.part000000000068/GABRQ.11_1935_10000_0.1392_0.9911_0.2805.png
                gene_name: GABRQ
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 14 percent done.
GABRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
KS ci ratio: 2.706228e-02	ci left: 6.679356e-01	ci right 6.863611e-01	k: 6772	n:10000
GABRA4   10000 perm   2 sec   (5625 perm/sec)   p_kst 6.772000e-01   p_cons 6.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRA4.10_1701_10000_0.6772_0.6395_1.png
                gene_name: GABRA4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
GABRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
Cons ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
KS ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
GABRG2   10000 perm   2 sec   (5287 perm/sec)   p_kst 7.715000e-01   p_cons 1.831000e-01   p_joint 4.436000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG2.10_1592_10000_0.7715_0.1831_0.4436.png
                gene_name: GABRG2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
GABRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
GABRG3   10000 perm   2 sec   (4791 perm/sec)   p_kst 9.053000e-01   p_cons 2.606000e-01   p_joint 5.966000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG3.10_1444_10000_0.9053_0.2606_0.5966.png
                gene_name: GABRG3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 19 percent done.
GAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
Cons ci ratio: 5.730108e-02	ci left: 3.095710e-01	ci right 3.279347e-01	k: 3187	n:10000
KS ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
GAD2   10000 perm   2 sec   (4842 perm/sec)   p_kst 7.314000e-01   p_cons 3.187000e-01   p_joint 6.610000e-01

Outputting figure to mutsig2_images.part000000000068/GAD2.10_1822_10000_0.7314_0.3187_0.661.png
                gene_name: GAD2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 21 percent done.
GALNT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
Cons ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
GALNT14   10000 perm   2 sec   (5238 perm/sec)   p_kst 1.082000e-01   p_cons 8.763000e-01   p_joint 2.134000e-01

Joint ci ratio: 5.431010e-02	ci left: 2.010069e-01	ci right 2.122785e-01	k: 4132	n:20000
Cons ci ratio: 1.077248e-02	ci left: 8.640423e-01	ci right 8.734502e-01	k: 17376	n:20000
KS ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
GALNT14   20000 perm   4 sec   (4776 perm/sec)   p_kst 1.187000e-01   p_cons 8.688000e-01   p_joint 2.066000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT14.10_1719_20000_0.1187_0.8688_0.2066.png
                gene_name: GALNT14
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 22 percent done.
G3BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
G3BP1   10000 perm   2 sec   (5383 perm/sec)   p_kst 2.254000e-01   p_cons 4.130000e-02   p_joint 4.970000e-02

Joint ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
Cons ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
KS ci ratio: 5.100442e-02	ci left: 2.221509e-01	ci right 2.338283e-01	k: 4559	n:20000
G3BP1   20000 perm   4 sec   (4851 perm/sec)   p_kst 2.279500e-01   p_cons 3.975000e-02   p_joint 4.590000e-02

Joint ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
Cons ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
KS ci ratio: 4.176373e-02	ci left: 2.222367e-01	ci right 2.317495e-01	k: 6809	n:30000
G3BP1   30000 perm   6 sec   (4691 perm/sec)   p_kst 2.269667e-01   p_cons 4.000000e-02   p_joint 7.570000e-02

Joint ci ratio: 5.712403e-02	ci left: 1.023083e-01	ci right 1.083492e-01	k: 4212	n:40000
Cons ci ratio: 9.546093e-02	ci left: 3.851581e-02	ci right 4.240126e-02	k: 1617	n:40000
KS ci ratio: 3.610422e-02	ci left: 2.234985e-01	ci right 2.317411e-01	k: 9104	n:40000
G3BP1   40000 perm   9 sec   (4572 perm/sec)   p_kst 2.276000e-01   p_cons 4.042500e-02   p_joint 1.053000e-01

Outputting figure to mutsig2_images.part000000000068/G3BP1.8_1445_40000_0.2276_0.040425_0.1053.png
                gene_name: G3BP1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 24 percent done.
GABRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
Cons ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
GABRA1   10000 perm   2 sec   (5708 perm/sec)   p_kst 8.001000e-01   p_cons 5.400000e-02   p_joint 2.725000e-01

Joint ci ratio: 3.345148e-02	ci left: 4.002302e-01	ci right 4.138968e-01	k: 8141	n:20000
Cons ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
KS ci ratio: 1.366875e-02	ci left: 7.988336e-01	ci right 8.098778e-01	k: 16088	n:20000
GABRA1   20000 perm   4 sec   (5101 perm/sec)   p_kst 8.044000e-01   p_cons 5.235000e-02   p_joint 4.070500e-01

Joint ci ratio: 3.070959e-02	ci left: 3.465271e-01	ci right 3.573683e-01	k: 10558	n:30000
Cons ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
KS ci ratio: 1.108944e-02	ci left: 8.018826e-01	ci right 8.108579e-01	k: 24192	n:30000
GABRA1   30000 perm   6 sec   (4861 perm/sec)   p_kst 8.064000e-01   p_cons 5.096667e-02   p_joint 3.519333e-01

Outputting figure to mutsig2_images.part000000000068/GABRA1.8_1407_30000_0.8064_0.050967_0.35193.png
                gene_name: GABRA1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
GABRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
Cons ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
KS ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
GABRA3   10000 perm   2 sec   (5104 perm/sec)   p_kst 7.327000e-01   p_cons 2.378000e-01   p_joint 4.970000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA3.8_1515_10000_0.7327_0.2378_0.497.png
                gene_name: GABRA3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 27 percent done.
GAB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
Cons ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
KS ci ratio: 2.644542e-02	ci left: 6.780094e-01	ci right 6.962815e-01	k: 6872	n:10000
GAB4   10000 perm   2 sec   (5866 perm/sec)   p_kst 6.872000e-01   p_cons 5.490000e-02   p_joint 1.641000e-01

Joint ci ratio: 5.687094e-02	ci left: 1.864625e-01	ci right 1.974272e-01	k: 3838	n:20000
Cons ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
KS ci ratio: 1.858516e-02	ci left: 6.833872e-01	ci right 6.962576e-01	k: 13797	n:20000
GAB4   20000 perm   4 sec   (5218 perm/sec)   p_kst 6.898500e-01   p_cons 5.600000e-02   p_joint 1.919000e-01

Joint ci ratio: 4.065664e-02	ci left: 2.317336e-01	ci right 2.413841e-01	k: 7096	n:30000
Cons ci ratio: 9.101331e-02	ci left: 5.557693e-02	ci right 6.090902e-02	k: 1746	n:30000
KS ci ratio: 1.517665e-02	ci left: 6.845307e-01	ci right 6.950325e-01	k: 20694	n:30000
GAB4   30000 perm   6 sec   (4965 perm/sec)   p_kst 6.898000e-01   p_cons 5.820000e-02   p_joint 2.365333e-01

Outputting figure to mutsig2_images.part000000000068/GAB4.7_1765_30000_0.6898_0.0582_0.23653.png
                gene_name: GAB4
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 29 percent done.
GABBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
Cons ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
KS ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
GABBR2   10000 perm   2 sec   (5462 perm/sec)   p_kst 4.230000e-01   p_cons 1.776000e-01   p_joint 3.597000e-01

Outputting figure to mutsig2_images.part000000000068/GABBR2.6_2902_10000_0.423_0.1776_0.3597.png
                gene_name: GABBR2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 30 percent done.
GABRR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
Cons ci ratio: 4.162025e-02	ci left: 4.601778e-01	ci right 4.798397e-01	k: 4700	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
GABRR1   10000 perm   2 sec   (5606 perm/sec)   p_kst 2.990000e-01   p_cons 4.700000e-01   p_joint 3.966000e-01

Outputting figure to mutsig2_images.part000000000068/GABRR1.6_1480_10000_0.299_0.47_0.3966.png
                gene_name: GABRR1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 32 percent done.
GAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
KS ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
GAK   10000 perm   2 sec   (4881 perm/sec)   p_kst 9.308000e-01   p_cons 6.088000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAK.6_4048_10000_0.9308_0.6088_1.png
                gene_name: GAK
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
GAL3ST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
GAL3ST3   10000 perm   2 sec   (5295 perm/sec)   p_kst 1.291000e-01   p_cons 1.924000e-01   p_joint 1.622000e-01

Joint ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
Cons ci ratio: 5.634478e-02	ci left: 1.893308e-01	ci right 2.003580e-01	k: 3896	n:20000
KS ci ratio: 7.196004e-02	ci left: 1.245313e-01	ci right 1.338768e-01	k: 2583	n:20000
GAL3ST3   20000 perm   4 sec   (4842 perm/sec)   p_kst 1.291500e-01   p_cons 1.948000e-01   p_joint 1.134000e-01

Outputting figure to mutsig2_images.part000000000068/GAL3ST3.6_1304_20000_0.12915_0.1948_0.1134.png
                gene_name: GAL3ST3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
GALNT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
Cons ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
KS ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
GALNT5   10000 perm   2 sec   (4993 perm/sec)   p_kst 7.686000e-01   p_cons 8.747000e-01   p_joint 9.216000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT5.6_2863_10000_0.7686_0.8747_0.9216.png
                gene_name: GALNT5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 37 percent done.
GALNT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
KS ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
GALNT8   10000 perm   2 sec   (5301 perm/sec)   p_kst 8.421000e-01   p_cons 1.098000e-01   p_joint 2.877000e-01

Joint ci ratio: 4.887638e-02	ci left: 2.373661e-01	ci right 2.493086e-01	k: 4866	n:20000
Cons ci ratio: 8.508172e-02	ci left: 9.185310e-02	ci right 1.000648e-01	k: 1918	n:20000
KS ci ratio: 1.217217e-02	ci left: 8.331740e-01	ci right 8.434275e-01	k: 16767	n:20000
GALNT8   20000 perm   4 sec   (4814 perm/sec)   p_kst 8.383500e-01   p_cons 9.590000e-02   p_joint 2.433000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT8.6_1958_20000_0.83835_0.0959_0.2433.png
                gene_name: GALNT8
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
GALNTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
KS ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
GALNTL2   10000 perm   2 sec   (5040 perm/sec)   p_kst 1.198000e-01   p_cons 7.068000e-01   p_joint 2.760000e-01

Joint ci ratio: 5.084557e-02	ci left: 2.232408e-01	ci right 2.349380e-01	k: 4581	n:20000
Cons ci ratio: 1.796217e-02	ci left: 6.978707e-01	ci right 7.105699e-01	k: 14085	n:20000
KS ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
GALNTL2   20000 perm   4 sec   (4614 perm/sec)   p_kst 1.211500e-01   p_cons 7.042500e-01   p_joint 2.290500e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL2.6_1960_20000_0.12115_0.70425_0.22905.png
                gene_name: GALNTL2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 40 percent done.
GALNTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
Cons ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
KS ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
GALNTL4   10000 perm   2 sec   (5126 perm/sec)   p_kst 6.025000e-01   p_cons 1.940000e-01   p_joint 3.794000e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL4.6_1868_10000_0.6025_0.194_0.3794.png
                gene_name: GALNTL4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 41 percent done.
FZD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
Cons ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
FZD4   10000 perm   2 sec   (5738 perm/sec)   p_kst 3.563000e-01   p_cons 1.338000e-01   p_joint 3.234000e-01

Outputting figure to mutsig2_images.part000000000068/FZD4.5_1622_10000_0.3563_0.1338_0.3234.png
                gene_name: FZD4
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 43 percent done.
GABRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 3.225041e-02	ci left: 5.866068e-01	ci right 6.059371e-01	k: 5963	n:10000
GABRE   10000 perm   2 sec   (5470 perm/sec)   p_kst 5.963000e-01   p_cons 3.421000e-01   p_joint 6.471000e-01

Outputting figure to mutsig2_images.part000000000068/GABRE.5_1557_10000_0.5963_0.3421_0.6471.png
                gene_name: GABRE
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
GABRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
GABRP   10000 perm   2 sec   (5707 perm/sec)   p_kst 2.628000e-01   p_cons 5.410000e-02   p_joint 2.253000e-01

Joint ci ratio: 5.112061e-02	ci left: 2.213582e-01	ci right 2.330212e-01	k: 4543	n:20000
Cons ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
KS ci ratio: 4.627528e-02	ci left: 2.579006e-01	ci right 2.701681e-01	k: 5280	n:20000
GABRP   20000 perm   4 sec   (5148 perm/sec)   p_kst 2.640000e-01   p_cons 5.455000e-02   p_joint 2.271500e-01

Joint ci ratio: 4.287284e-02	ci left: 2.132394e-01	ci right 2.226153e-01	k: 6537	n:30000
Cons ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
KS ci ratio: 3.660049e-02	ci left: 2.715102e-01	ci right 2.816664e-01	k: 8297	n:30000
GABRP   30000 perm   6 sec   (4960 perm/sec)   p_kst 2.765667e-01   p_cons 5.473333e-02   p_joint 2.179000e-01

Outputting figure to mutsig2_images.part000000000068/GABRP.5_1359_30000_0.27657_0.054733_0.2179.png
                gene_name: GABRP
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
GABRR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
KS ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
GABRR2   10000 perm   2 sec   (5609 perm/sec)   p_kst 7.770000e-02   p_cons 4.203000e-01   p_joint 1.427000e-01

Joint ci ratio: 6.209524e-02	ci left: 1.609659e-01	ci right 1.713314e-01	k: 3322	n:20000
Cons ci ratio: 3.177432e-02	ci left: 4.252200e-01	ci right 4.389998e-01	k: 8642	n:20000
KS ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
GABRR2   20000 perm   4 sec   (5014 perm/sec)   p_kst 7.020000e-02   p_cons 4.321000e-01   p_joint 1.661000e-01

Joint ci ratio: 6.541557e-02	ci left: 1.033922e-01	ci right 1.104174e-01	k: 3206	n:30000
Cons ci ratio: 2.578992e-02	ci left: 4.294132e-01	ci right 4.406660e-01	k: 13051	n:30000
KS ci ratio: 7.921421e-02	ci left: 7.246949e-02	ci right 7.847970e-02	k: 2263	n:30000
GABRR2   30000 perm   6 sec   (4839 perm/sec)   p_kst 7.543333e-02   p_cons 4.350333e-01   p_joint 1.068667e-01

Outputting figure to mutsig2_images.part000000000068/GABRR2.5_1509_30000_0.075433_0.43503_0.10687.png
                gene_name: GABRR2
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 48 percent done.
GAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
KS ci ratio: 2.203437e-02	ci left: 7.514032e-01	ci right 7.682452e-01	k: 7599	n:10000
GAD1   10000 perm   2 sec   (5568 perm/sec)   p_kst 7.599000e-01   p_cons 7.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAD1.5_1890_10000_0.7599_0.7867_1.png
                gene_name: GAD1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
GADL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
Cons ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
KS ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
GADL1   10000 perm   2 sec   (5734 perm/sec)   p_kst 6.120000e-02   p_cons 6.550000e-02   p_joint 1.557000e-01

Joint ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
Cons ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
KS ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
GADL1   20000 perm   4 sec   (5168 perm/sec)   p_kst 5.960000e-02   p_cons 6.865000e-02   p_joint 7.385000e-02

Joint ci ratio: 9.239720e-02	ci left: 5.397893e-02	ci right 5.924068e-02	k: 1697	n:30000
Cons ci ratio: 8.429725e-02	ci left: 6.439222e-02	ci right 7.009194e-02	k: 2016	n:30000
KS ci ratio: 8.955279e-02	ci left: 5.733867e-02	ci right 6.274692e-02	k: 1800	n:30000
GADL1   30000 perm   6 sec   (4944 perm/sec)   p_kst 6.000000e-02   p_cons 6.720000e-02   p_joint 5.656667e-02

Outputting figure to mutsig2_images.part000000000068/GADL1.5_1626_30000_0.06_0.0672_0.056567.png
                gene_name: GADL1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 51 percent done.
GALC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
KS ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
GALC   10000 perm   2 sec   (5272 perm/sec)   p_kst 1.392000e-01   p_cons 8.400000e-02   p_joint 8.770000e-02

Joint ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 6.726673e-02	ci left: 1.402457e-01	ci right 1.500577e-01	k: 2902	n:20000
GALC   20000 perm   4 sec   (4808 perm/sec)   p_kst 1.451000e-01   p_cons 8.700000e-02   p_joint 8.490000e-02

Outputting figure to mutsig2_images.part000000000068/GALC.5_2189_20000_0.1451_0.087_0.0849.png
                gene_name: GALC
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 52 percent done.
GALNT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
Cons ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
GALNT7   10000 perm   2 sec   (5325 perm/sec)   p_kst 1.060000e-01   p_cons 9.800000e-02   p_joint 1.129000e-01

Joint ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
Cons ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
KS ci ratio: 8.077409e-02	ci left: 1.010787e-01	ci right 1.096364e-01	k: 2106	n:20000
GALNT7   20000 perm   4 sec   (4807 perm/sec)   p_kst 1.053000e-01   p_cons 1.000500e-01   p_joint 9.140000e-02

Outputting figure to mutsig2_images.part000000000068/GALNT7.5_2022_20000_0.1053_0.10005_0.0914.png
                gene_name: GALNT7
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 54 percent done.
GALNTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
Cons ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
KS ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
GALNTL5   10000 perm   2 sec   (5876 perm/sec)   p_kst 8.159000e-01   p_cons 2.297000e-01   p_joint 4.902000e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL5.5_1364_10000_0.8159_0.2297_0.4902.png
                gene_name: GALNTL5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 56 percent done.
FZD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
KS ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
FZD3   10000 perm   2 sec   (5640 perm/sec)   p_kst 8.828000e-01   p_cons 6.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD3.4_2025_10000_0.8828_0.6962_1.png
                gene_name: FZD3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
GAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
Cons ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
KS ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
GAB3   10000 perm   2 sec   (5686 perm/sec)   p_kst 3.734000e-01   p_cons 2.396000e-01   p_joint 2.824000e-01

Outputting figure to mutsig2_images.part000000000068/GAB3.4_1804_10000_0.3734_0.2396_0.2824.png
                gene_name: GAB3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 59 percent done.
GAL3ST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
Cons ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
GAL3ST2   10000 perm   2 sec   (5991 perm/sec)   p_kst 9.010000e-02   p_cons 1.363000e-01   p_joint 9.260000e-02

Joint ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
Cons ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
KS ci ratio: 8.651020e-02	ci left: 8.905828e-02	ci right 9.716047e-02	k: 1861	n:20000
GAL3ST2   20000 perm   4 sec   (5324 perm/sec)   p_kst 9.305000e-02   p_cons 1.306500e-01   p_joint 9.175000e-02

Outputting figure to mutsig2_images.part000000000068/GAL3ST2.4_1213_20000_0.09305_0.13065_0.09175.png
                gene_name: GAL3ST2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 60 percent done.
GAL3ST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
GAL3ST4   10000 perm   2 sec   (6034 perm/sec)   p_kst 7.815000e-01   p_cons 4.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAL3ST4.4_1473_10000_0.7815_0.4706_1.png
                gene_name: GAL3ST4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GALNT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
Cons ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
KS ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
GALNT12   10000 perm   2 sec   (5672 perm/sec)   p_kst 4.260000e-02   p_cons 3.129000e-01   p_joint 5.540000e-02

Joint ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
Cons ci ratio: 4.137781e-02	ci left: 3.032950e-01	ci right 3.161603e-01	k: 6194	n:20000
KS ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
GALNT12   20000 perm   4 sec   (5144 perm/sec)   p_kst 4.405000e-02   p_cons 3.097000e-01   p_joint 1.201000e-01

Joint ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
Cons ci ratio: 3.348567e-02	ci left: 3.082852e-01	ci right 3.188176e-01	k: 9406	n:30000
KS ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
GALNT12   30000 perm   6 sec   (4939 perm/sec)   p_kst 4.340000e-02   p_cons 3.135333e-01   p_joint 3.513333e-02

Joint ci ratio: 7.531690e-02	ci left: 6.103123e-02	ci right 6.583239e-02	k: 2536	n:40000
Cons ci ratio: 2.911720e-02	ci left: 3.072617e-01	ci right 3.163656e-01	k: 12472	n:40000
KS ci ratio: 9.100849e-02	ci left: 4.230423e-02	ci right 4.636226e-02	k: 1772	n:40000
GALNT12   40000 perm   8 sec   (4795 perm/sec)   p_kst 4.430000e-02   p_cons 3.118000e-01   p_joint 6.340000e-02

Outputting figure to mutsig2_images.part000000000068/GALNT12.4_1786_40000_0.0443_0.3118_0.0634.png
                gene_name: GALNT12
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 63 percent done.
GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
Cons ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
KS ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
GALNT2   10000 perm   2 sec   (5606 perm/sec)   p_kst 1.061000e-01   p_cons 2.642000e-01   p_joint 1.153000e-01

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 4.618022e-02	ci left: 2.586946e-01	ci right 2.709739e-01	k: 5296	n:20000
KS ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
GALNT2   20000 perm   4 sec   (5064 perm/sec)   p_kst 1.071500e-01   p_cons 2.648000e-01   p_joint 1.180000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT2.4_1780_20000_0.10715_0.2648_0.118.png
                gene_name: GALNT2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 65 percent done.
GALNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
GALNT3   10000 perm   2 sec   (5881 perm/sec)   p_kst 1.800000e-02   p_cons 4.750000e-02   p_joint 1.090000e-02

Joint ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
Cons ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
KS ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
GALNT3   20000 perm   4 sec   (5245 perm/sec)   p_kst 1.935000e-02   p_cons 4.655000e-02   p_joint 1.765000e-02

Joint ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
Cons ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
KS ci ratio: 1.610439e-01	ci left: 1.780522e-02	ci right 2.095549e-02	k: 580	n:30000
GALNT3   30000 perm   6 sec   (5028 perm/sec)   p_kst 1.933333e-02   p_cons 4.733333e-02   p_joint 3.456667e-02

Joint ci ratio: 1.032984e-01	ci left: 3.295217e-02	ci right 3.656578e-02	k: 1389	n:40000
Cons ci ratio: 8.643903e-02	ci left: 4.678240e-02	ci right 5.103339e-02	k: 1955	n:40000
KS ci ratio: 1.393465e-01	ci left: 1.804668e-02	ci right 2.077372e-02	k: 775	n:40000
GALNT3   40000 perm   8 sec   (4881 perm/sec)   p_kst 1.937500e-02   p_cons 4.887500e-02   p_joint 3.472500e-02

Joint ci ratio: 9.549734e-02	ci left: 3.104105e-02	ci right 3.417352e-02	k: 1629	n:50000
Cons ci ratio: 7.841576e-02	ci left: 4.573041e-02	ci right 4.948234e-02	k: 2379	n:50000
KS ci ratio: 1.254959e-01	ci left: 1.793761e-02	ci right 2.035867e-02	k: 956	n:50000
GALNT3   50000 perm   10 sec   (4763 perm/sec)   p_kst 1.912000e-02   p_cons 4.758000e-02   p_joint 3.258000e-02

Joint ci ratio: 8.540982e-02	ci left: 3.246620e-02	ci right 3.537911e-02	k: 2034	n:60000
Cons ci ratio: 7.175521e-02	ci left: 4.568056e-02	ci right 4.909672e-02	k: 2842	n:60000
KS ci ratio: 1.205540e-01	ci left: 1.627177e-02	ci right 1.837529e-02	k: 1038	n:60000
GALNT3   60000 perm   13 sec   (4662 perm/sec)   p_kst 1.730000e-02   p_cons 4.736667e-02   p_joint 3.390000e-02

Joint ci ratio: 7.332347e-02	ci left: 3.778835e-02	ci right 4.067857e-02	k: 2745	n:70000
Cons ci ratio: 6.655722e-02	ci left: 4.564067e-02	ci right 4.879700e-02	k: 3304	n:70000
KS ci ratio: 1.116192e-01	ci left: 1.634700e-02	ci right 1.829330e-02	k: 1211	n:70000
GALNT3   70000 perm   15 sec   (4576 perm/sec)   p_kst 1.730000e-02   p_cons 4.720000e-02   p_joint 3.921429e-02

Joint ci ratio: 8.650639e-02	ci left: 2.394137e-02	ci right 2.611826e-02	k: 2001	n:80000
Cons ci ratio: 6.195915e-02	ci left: 4.617170e-02	ci right 4.913621e-02	k: 3811	n:80000
KS ci ratio: 1.041483e-01	ci left: 1.649302e-02	ci right 1.831721e-02	k: 1391	n:80000
GALNT3   80000 perm   18 sec   (4495 perm/sec)   p_kst 1.738750e-02   p_cons 4.763750e-02   p_joint 2.501250e-02

Joint ci ratio: 8.113972e-02	ci left: 2.425115e-02	ci right 2.631293e-02	k: 2274	n:90000
Cons ci ratio: 5.828380e-02	ci left: 4.645905e-02	ci right 4.925907e-02	k: 4306	n:90000
KS ci ratio: 9.777980e-02	ci left: 1.668589e-02	ci right 1.841208e-02	k: 1578	n:90000
GALNT3   90000 perm   20 sec   (4419 perm/sec)   p_kst 1.753333e-02   p_cons 4.784444e-02   p_joint 2.526667e-02

Outputting figure to mutsig2_images.part000000000068/GALNT3.4_1942_90000_0.017533_0.047844_0.025267.png
                gene_name: GALNT3
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 67 percent done.
GALNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
Cons ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
KS ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
GALNT4   10000 perm   2 sec   (5777 perm/sec)   p_kst 7.205000e-01   p_cons 2.813000e-01   p_joint 5.843000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT4.4_1741_10000_0.7205_0.2813_0.5843.png
                gene_name: GALNT4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
GALNTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
Cons ci ratio: 2.024777e-02	ci left: 7.812748e-01	ci right 7.973563e-01	k: 7894	n:10000
KS ci ratio: 4.165368e-02	ci left: 4.597784e-01	ci right 4.794394e-01	k: 4696	n:10000
GALNTL1   10000 perm   2 sec   (5610 perm/sec)   p_kst 4.696000e-01   p_cons 7.894000e-01   p_joint 6.241000e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL1.4_1737_10000_0.4696_0.7894_0.6241.png
                gene_name: GALNTL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 70 percent done.
FZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
FZD7   10000 perm   2 sec   (5863 perm/sec)   p_kst 4.007000e-01   p_cons 4.320000e-02   p_joint 4.007000e-01

Joint ci ratio: 2.407854e-02	ci left: 5.630038e-01	ci right 5.767759e-01	k: 11398	n:20000
Cons ci ratio: 1.326265e-01	ci left: 3.906816e-02	ci right 4.466603e-02	k: 836	n:20000
KS ci ratio: 3.386729e-02	ci left: 3.942972e-01	ci right 4.079316e-01	k: 8022	n:20000
FZD7   20000 perm   4 sec   (5269 perm/sec)   p_kst 4.011000e-01   p_cons 4.180000e-02   p_joint 5.699000e-01

Joint ci ratio: 1.967515e-02	ci left: 5.639072e-01	ci right 5.751460e-01	k: 17086	n:30000
Cons ci ratio: 1.102047e-01	ci left: 3.823235e-02	ci right 4.272387e-02	k: 1213	n:30000
KS ci ratio: 2.758828e-02	ci left: 3.966776e-01	ci right 4.078080e-01	k: 12067	n:30000
FZD7   30000 perm   6 sec   (5027 perm/sec)   p_kst 4.022333e-01   p_cons 4.043333e-02   p_joint 5.695333e-01

Joint ci ratio: 2.406647e-02	ci left: 3.939466e-01	ci right 4.035681e-01	k: 15950	n:40000
Cons ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
KS ci ratio: 2.406647e-02	ci left: 3.939466e-01	ci right 4.035681e-01	k: 15950	n:40000
FZD7   40000 perm   8 sec   (4875 perm/sec)   p_kst 3.987500e-01   p_cons 4.007500e-02   p_joint 3.987500e-01

Outputting figure to mutsig2_images.part000000000068/FZD7.3_1729_40000_0.39875_0.040075_0.39875.png
                gene_name: FZD7
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 71 percent done.
G3BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
G3BP2   10000 perm   2 sec   (6284 perm/sec)   p_kst 6.680000e-02   p_cons 1.842000e-01   p_joint 9.840000e-02

Joint ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
Cons ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
KS ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
G3BP2   20000 perm   4 sec   (5622 perm/sec)   p_kst 6.805000e-02   p_cons 1.815000e-01   p_joint 1.005500e-01

Joint ci ratio: 6.755823e-02	ci left: 9.748097e-02	ci right 1.043299e-01	k: 3026	n:30000
Cons ci ratio: 4.821790e-02	ci left: 1.761623e-01	ci right 1.848997e-01	k: 5415	n:30000
KS ci ratio: 8.341394e-02	ci left: 6.569950e-02	ci right 7.145106e-02	k: 2056	n:30000
G3BP2   30000 perm   6 sec   (5337 perm/sec)   p_kst 6.853333e-02   p_cons 1.805000e-01   p_joint 1.008667e-01

Outputting figure to mutsig2_images.part000000000068/G3BP2.3_1493_30000_0.068533_0.1805_0.10087.png
                gene_name: G3BP2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 73 percent done.
GABBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
Cons ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
GABBR1   10000 perm   2 sec   (5408 perm/sec)   p_kst 1.004000e-01   p_cons 8.125000e-01   p_joint 2.111000e-01

Joint ci ratio: 6.336889e-02	ci left: 1.554867e-01	ci right 1.657121e-01	k: 3211	n:20000
Cons ci ratio: 1.365355e-02	ci left: 7.991872e-01	ci right 8.102240e-01	k: 16095	n:20000
KS ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
GABBR1   20000 perm   4 sec   (4870 perm/sec)   p_kst 9.965000e-02   p_cons 8.047500e-01   p_joint 1.605500e-01

Outputting figure to mutsig2_images.part000000000068/GABBR1.3_3119_20000_0.09965_0.80475_0.16055.png
                gene_name: GABBR1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 75 percent done.
GABRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
GABRB2   10000 perm   2 sec   (6095 perm/sec)   p_kst 8.480000e-02   p_cons 5.846000e-01   p_joint 1.859000e-01

Joint ci ratio: 5.873369e-02	ci left: 1.767729e-01	ci right 1.875197e-01	k: 3642	n:20000
Cons ci ratio: 2.342432e-02	ci left: 5.764807e-01	ci right 5.901950e-01	k: 11667	n:20000
KS ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
GABRB2   20000 perm   4 sec   (5461 perm/sec)   p_kst 8.610000e-02   p_cons 5.833500e-01   p_joint 1.821000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB2.3_1579_20000_0.0861_0.58335_0.1821.png
                gene_name: GABRB2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
GAL3ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
GAL3ST1   10000 perm   2 sec   (6037 perm/sec)   p_kst 2.030000e-01   p_cons 1.387000e-01   p_joint 2.318000e-01

Outputting figure to mutsig2_images.part000000000068/GAL3ST1.3_1280_10000_0.203_0.1387_0.2318.png
                gene_name: GAL3ST1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 78 percent done.
GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
Cons ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
GALNT1   10000 perm   2 sec   (5930 perm/sec)   p_kst 3.606000e-01   p_cons 7.130000e-02   p_joint 2.438000e-01

Joint ci ratio: 5.047417e-02	ci left: 2.258174e-01	ci right 2.375607e-01	k: 4633	n:20000
Cons ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
KS ci ratio: 3.661190e-02	ci left: 3.576257e-01	ci right 3.710138e-01	k: 7286	n:20000
GALNT1   20000 perm   4 sec   (5294 perm/sec)   p_kst 3.643000e-01   p_cons 7.180000e-02   p_joint 2.316500e-01

Outputting figure to mutsig2_images.part000000000068/GALNT1.3_1724_20000_0.3643_0.0718_0.23165.png
                gene_name: GALNT1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 79 percent done.
GALNT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
GALNT10   10000 perm   2 sec   (5930 perm/sec)   p_kst 4.914000e-01   p_cons 1.337000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT10.3_1860_10000_0.4914_0.1337_0.6531.png
                gene_name: GALNT10
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 81 percent done.
GALR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
GALR1   10000 perm   2 sec   (6301 perm/sec)   p_kst 4.771000e-01   p_cons 4.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALR1.3_1062_10000_0.4771_0.4908_1.png
                gene_name: GALR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
FZD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
KS ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
FZD9   10000 perm   2 sec   (6269 perm/sec)   p_kst 6.614000e-01   p_cons 7.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD9.2_1780_10000_0.6614_0.7269_1.png
                gene_name: FZD9
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
FZR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
KS ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
FZR1   10000 perm   2 sec   (6377 perm/sec)   p_kst 9.471000e-01   p_cons 1.731000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZR1.2_1543_10000_0.9471_0.1731_1.png
                gene_name: FZR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
G2E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
Cons ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
KS ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
G2E3   10000 perm   2 sec   (6113 perm/sec)   p_kst 2.705000e-01   p_cons 7.682000e-01   p_joint 5.064000e-01

Outputting figure to mutsig2_images.part000000000068/G2E3.2_2177_10000_0.2705_0.7682_0.5064.png
                gene_name: G2E3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 87 percent done.
G6PC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
Cons ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
KS ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
G6PC2   10000 perm   2 sec   (6581 perm/sec)   p_kst 3.496000e-01   p_cons 5.660000e-02   p_joint 6.750000e-01

Joint ci ratio: 4.412540e-02	ci left: 2.766647e-01	ci right 2.891985e-01	k: 5658	n:20000
Cons ci ratio: 1.159572e-01	ci left: 5.090763e-02	ci right 5.722281e-02	k: 1080	n:20000
KS ci ratio: 3.718386e-02	ci left: 3.505055e-01	ci right 3.638361e-01	k: 7143	n:20000
G6PC2   20000 perm   3 sec   (5843 perm/sec)   p_kst 3.571500e-01   p_cons 5.400000e-02   p_joint 2.829000e-01

Joint ci ratio: 2.190930e-02	ci left: 5.105270e-01	ci right 5.218698e-01	k: 15486	n:30000
Cons ci ratio: 9.381097e-02	ci left: 5.241414e-02	ci right 5.760580e-02	k: 1649	n:30000
KS ci ratio: 3.038693e-02	ci left: 3.513433e-01	ci right 3.622178e-01	k: 10703	n:30000
G6PC2   30000 perm   5 sec   (5557 perm/sec)   p_kst 3.567667e-01   p_cons 5.496667e-02   p_joint 5.162000e-01

Outputting figure to mutsig2_images.part000000000068/G6PC2.2_1088_30000_0.35677_0.054967_0.5162.png
                gene_name: G6PC2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 89 percent done.
G6PD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
Cons ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
KS ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
G6PD   10000 perm   2 sec   (6184 perm/sec)   p_kst 4.831000e-01   p_cons 2.352000e-01   p_joint 5.064000e-01

Outputting figure to mutsig2_images.part000000000068/G6PD.2_1690_10000_0.4831_0.2352_0.5064.png
                gene_name: G6PD
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 90 percent done.
GAA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
Cons ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
KS ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
GAA   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.283000e-01   p_cons 1.552000e-01   p_joint 2.064000e-01

Joint ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
Cons ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
KS ci ratio: 7.103171e-02	ci left: 1.274361e-01	ci right 1.368712e-01	k: 2642	n:20000
GAA   20000 perm   4 sec   (5166 perm/sec)   p_kst 1.321000e-01   p_cons 1.564500e-01   p_joint 6.805000e-02

Joint ci ratio: 7.507764e-02	ci left: 8.016406e-02	ci right 8.645025e-02	k: 2498	n:30000
Cons ci ratio: 5.293684e-02	ci left: 1.504271e-01	ci right 1.586400e-01	k: 4635	n:30000
KS ci ratio: 5.872937e-02	ci left: 1.254896e-01	ci right 1.331157e-01	k: 3878	n:30000
GAA   30000 perm   6 sec   (4924 perm/sec)   p_kst 1.292667e-01   p_cons 1.545000e-01   p_joint 8.326667e-02

Outputting figure to mutsig2_images.part000000000068/GAA.2_2935_30000_0.12927_0.1545_0.083267.png
                gene_name: GAA
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 92 percent done.
GAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
KS ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
GAB1   10000 perm   2 sec   (5980 perm/sec)   p_kst 6.992000e-01   p_cons 1.283000e-01   p_joint 1

Joint ci ratio: 7.408212e-02	ci left: 1.182322e-01	ci right 1.273777e-01	k: 2455	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 1.806570e-02	ci left: 6.954562e-01	ci right 7.081850e-01	k: 14037	n:20000
GAB1   20000 perm   4 sec   (5378 perm/sec)   p_kst 7.018500e-01   p_cons 9.340000e-02   p_joint 1.227500e-01

Outputting figure to mutsig2_images.part000000000068/GAB1.2_2219_20000_0.70185_0.0934_0.12275.png
                gene_name: GAB1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 94 percent done.
GABPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
KS ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
GABPB1   10000 perm   2 sec   (6638 perm/sec)   p_kst 6.370000e-01   p_cons 7.286000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABPB1.2_1268_10000_0.637_0.7286_1.png
                gene_name: GABPB1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
GALK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.874557e-02	ci left: 8.061311e-01	ci right 8.214857e-01	k: 8139	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
GALK2   10000 perm   2 sec   (6363 perm/sec)   p_kst 1.734000e-01   p_cons 8.139000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALK2.2_1441_10000_0.1734_0.8139_1.png
                gene_name: GALK2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
GALNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
KS ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
GALNT11   10000 perm   2 sec   (6319 perm/sec)   p_kst 3.451000e-01   p_cons 2.780000e-02   p_joint 1.350000e-02

Joint ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
Cons ci ratio: 1.668701e-01	ci left: 2.460579e-02	ci right 2.913318e-02	k: 536	n:20000
KS ci ratio: 3.829453e-02	ci left: 3.371656e-01	ci right 3.503798e-01	k: 6875	n:20000
GALNT11   20000 perm   4 sec   (5641 perm/sec)   p_kst 3.437500e-01   p_cons 2.680000e-02   p_joint 1.605000e-02

Joint ci ratio: 1.763658e-01	ci left: 1.476989e-02	ci right 1.765824e-02	k: 485	n:30000
Cons ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
KS ci ratio: 3.095347e-02	ci left: 3.429402e-01	ci right 3.537558e-01	k: 10450	n:30000
GALNT11   30000 perm   6 sec   (5363 perm/sec)   p_kst 3.483333e-01   p_cons 2.646667e-02   p_joint 1.616667e-02

Joint ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
Cons ci ratio: 1.207994e-01	ci left: 2.409850e-02	ci right 2.722087e-02	k: 1025	n:40000
KS ci ratio: 2.690814e-02	ci left: 3.419601e-01	ci right 3.513122e-01	k: 13865	n:40000
GALNT11   40000 perm   8 sec   (5177 perm/sec)   p_kst 3.466250e-01   p_cons 2.562500e-02   p_joint 1.557500e-02

Joint ci ratio: 1.427370e-01	ci left: 1.379841e-02	ci right 1.593845e-02	k: 742	n:50000
Cons ci ratio: 1.100670e-01	ci left: 2.337667e-02	ci right 2.611889e-02	k: 1236	n:50000
KS ci ratio: 2.407003e-02	ci left: 3.424078e-01	ci right 3.507700e-01	k: 17329	n:50000
GALNT11   50000 perm   10 sec   (5055 perm/sec)   p_kst 3.465800e-01   p_cons 2.472000e-02   p_joint 1.484000e-02

Joint ci ratio: 1.298284e-01	ci left: 1.399417e-02	ci right 1.595315e-02	k: 897	n:60000
Cons ci ratio: 1.007699e-01	ci left: 2.335899e-02	ci right 2.585395e-02	k: 1475	n:60000
KS ci ratio: 2.193246e-02	ci left: 3.436059e-01	ci right 3.512422e-01	k: 20845	n:60000
GALNT11   60000 perm   12 sec   (4944 perm/sec)   p_kst 3.474167e-01   p_cons 2.458333e-02   p_joint 1.495000e-02

Joint ci ratio: 1.185245e-01	ci left: 1.447305e-02	ci right 1.631030e-02	k: 1076	n:70000
Cons ci ratio: 9.263520e-02	ci left: 2.378620e-02	ci right 2.611055e-02	k: 1745	n:70000
KS ci ratio: 2.032557e-02	ci left: 3.434444e-01	ci right 3.505111e-01	k: 24288	n:70000
GALNT11   70000 perm   14 sec   (4842 perm/sec)   p_kst 3.469714e-01   p_cons 2.492857e-02   p_joint 1.537143e-02

Joint ci ratio: 1.100041e-01	ci left: 1.476479e-02	ci right 1.649559e-02	k: 1249	n:80000
Cons ci ratio: 8.589230e-02	ci left: 2.428400e-02	ci right 2.647560e-02	k: 2029	n:80000
KS ci ratio: 1.906953e-02	ci left: 3.423289e-01	ci right 3.489323e-01	k: 27650	n:80000
GALNT11   80000 perm   17 sec   (4731 perm/sec)   p_kst 3.456250e-01   p_cons 2.536250e-02   p_joint 1.561250e-02

Joint ci ratio: 1.044797e-01	ci left: 1.459478e-02	ci right 1.621445e-02	k: 1385	n:90000
Cons ci ratio: 8.113972e-02	ci left: 2.425115e-02	ci right 2.631293e-02	k: 2274	n:90000
KS ci ratio: 1.798174e-02	ci left: 3.424482e-01	ci right 3.486729e-01	k: 31100	n:90000
GALNT11   90000 perm   19 sec   (4633 perm/sec)   p_kst 3.455556e-01   p_cons 2.526667e-02   p_joint 1.538889e-02

Joint ci ratio: 9.898774e-02	ci left: 1.467515e-02	ci right 1.621314e-02	k: 1543	n:100000
Cons ci ratio: 7.709771e-02	ci left: 2.422756e-02	ci right 2.618011e-02	k: 2519	n:100000
KS ci ratio: 1.704528e-02	ci left: 3.429713e-01	ci right 3.488776e-01	k: 34592	n:100000
GALNT11   100000 perm   22 sec   (4535 perm/sec)   p_kst 3.459200e-01   p_cons 2.519000e-02   p_joint 1.543000e-02

Outputting figure to mutsig2_images.part000000000068/GALNT11.2_1871_100000_0.34592_0.02519_0.01543.png
                gene_name: GALNT11
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 98 percent done.
GALNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.789885e-02	ci left: 5.069520e-01	ci right 5.266382e-01	k: 5168	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
GALNT6   10000 perm   2 sec   (6428 perm/sec)   p_kst 1.394000e-01   p_cons 5.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT6.2_1909_10000_0.1394_0.5168_1.png
                gene_name: GALNT6
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000068
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 68 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 4421976: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000069> was used as the working directory.
Started at Wed Oct 24 17:47:57 2012
Results reported at Wed Oct 24 18:23:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000069.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000069.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 69  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000069.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2471.90 sec.
    Max Memory :      5348 MB
    Max Swap   :      7847 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
69
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 69
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 69: processing genes 6153 - 6242
Calculating significance of each gene.
Using projection method.
6153	GALR2	8.931493e-01
6154	GALR3	1
6155	GALT	5.649535e-01
6156	GAMT	1
6157	GAN	8.379005e-01
6158	GANAB	9.976717e-01
6159	GANC	9.973673e-01
6160	GAP43	1.498450e-02
6161	GAPDH	1.904615e-01
6162	GAPDHS	1.069315e-01
6163	GAPT	1
6164	GAPVD1	9.941371e-01
6165	GAR1	7.105408e-02
6166	GARNL3	7.936525e-01
6167	GARS	6.442336e-01
6168	GART	1
6169	GAS1	2.303324e-01
6170	GAS2	8.234850e-01
6171	GAS2L1	1
6172	GAS2L2	5.636696e-01
6173	GAS2L3	7.322496e-01
6174	GAS6	8.721031e-01
6175	GAS7	2.105813e-01
6176	GAS8	8.313004e-01
6177	GAST	2.566185e-01
6178	GATA1	5.875958e-01
6179	GATA2	7.789404e-01
In gene GATA3 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1110    n = 1	mu =   7.03e-07
6180	GATA3	4.900472e-01
6181	GATA4	1
6182	GATA5	2.449050e-02
6183	GATA6	1
6184	GATAD1	2.379486e-01
6185	GATAD2A	9.478960e-01
6186	GATAD2B	1.572162e-01
6187	GATC	4.384632e-01
6188	GATM	9.459830e-02
6189	GATS	4.339839e-02
6190	GATSL3	1
6191	GBA	1
6192	GBA2	9.677233e-01
6193	GBA3	3.202321e-04
6194	GBAS	6.685805e-01
6195	GBE1	9.051408e-01
6196	GBF1	9.998772e-01
6197	GBGT1	1
6198	GBP1	7.109746e-01
6199	GBP2	1
6200	GBP3	8.029335e-01
6201	GBP4	8.819065e-03
6202	GBP5	3.433154e-01
6203	GBP6	1.406123e-01
6204	GBP7	7.405861e-01
6205	GBX1	8.574992e-01
6206	GBX2	8.796038e-01
6207	GC	3.951756e-02
6208	GCA	4.675660e-01
6209	GCAT	2.396385e-01
6210	GCC1	3.353297e-01
6211	GCC2	5.737698e-01
6212	GCDH	6.328178e-01
6213	GCET2	1
6214	GCFC1	9.871214e-01
6215	GCG	2.602214e-02
6216	GCH1	4.020647e-02
6217	GCHFR	1
6218	GCK	1
6219	GCKR	2.415490e-01
6220	GCLC	1.017696e-01
6221	GCLM	7.584430e-01
6222	GCM1	5.598739e-01
6223	GCM2	5.871721e-01
6224	GCN1L1	9.216089e-01
6225	GCNT1	1
6226	GCNT2	9.753447e-01
6227	GCNT3	5.416551e-01
6228	GCNT4	1
6229	GCOM1	7.106855e-01
6230	GCSH	1
6231	GDA	8.910269e-01
6232	GDAP1	7.348995e-01
6233	GDAP1L1	2.975586e-01
In gene GDAP2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 1591    n = 1	mu =   9.71e-07
6234	GDAP2	5.733254e-01
6235	GDE1	1
6236	GDF10	1.270331e-01
6237	GDF11	9.310171e-01
6238	GDF15	6.278806e-01
6239	GDF2	4.098211e-01
6240	GDF3	1
6241	GDF5	5.308343e-01
6242	GDF6	5.281322e-03
Done

Running MutSig 2:
Scatter job 69: processing genes 6153 - 6242
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GCN1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
KS ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
GCN1L1   10000 perm   4 sec   (2704 perm/sec)   p_kst 2.187000e-01   p_cons 1.330000e-02   p_joint 4.950000e-02

Joint ci ratio: 1.232388e-01	ci left: 4.517535e-02	ci right 5.115689e-02	k: 962	n:20000
Cons ci ratio: 2.277143e-01	ci left: 1.293634e-02	ci right 1.630694e-02	k: 291	n:20000
KS ci ratio: 5.253636e-02	ci left: 2.119970e-01	ci right 2.234852e-01	k: 4354	n:20000
GCN1L1   20000 perm   11 sec   (1848 perm/sec)   p_kst 2.177000e-01   p_cons 1.455000e-02   p_joint 4.810000e-02

Joint ci ratio: 1.129476e-01	ci left: 3.641581e-02	ci right 4.080746e-02	k: 1157	n:30000
Cons ci ratio: 1.878983e-01	ci left: 1.295527e-02	ci right 1.567332e-02	k: 428	n:30000
KS ci ratio: 4.296108e-02	ci left: 2.125449e-01	ci right 2.219099e-01	k: 6516	n:30000
GCN1L1   30000 perm   15 sec   (1984 perm/sec)   p_kst 2.172000e-01   p_cons 1.426667e-02   p_joint 3.856667e-02

Joint ci ratio: 8.714396e-02	ci left: 4.604791e-02	ci right 5.026800e-02	k: 1925	n:40000
Cons ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
KS ci ratio: 3.742378e-02	ci left: 2.112058e-01	ci right 2.192856e-01	k: 8609	n:40000
GCN1L1   40000 perm   19 sec   (2056 perm/sec)   p_kst 2.152250e-01   p_cons 1.410000e-02   p_joint 4.812500e-02

Joint ci ratio: 8.046020e-02	ci left: 4.349361e-02	ci right 4.715941e-02	k: 2265	n:50000
Cons ci ratio: 1.478715e-01	ci left: 1.283429e-02	ci right 1.490272e-02	k: 692	n:50000
KS ci ratio: 3.350165e-02	ci left: 2.113460e-01	ci right 2.185671e-01	k: 10747	n:50000
GCN1L1   50000 perm   24 sec   (2099 perm/sec)   p_kst 2.149400e-01   p_cons 1.384000e-02   p_joint 4.530000e-02

Joint ci ratio: 7.936894e-02	ci left: 3.751399e-02	ci right 4.063080e-02	k: 2343	n:60000
Cons ci ratio: 1.347907e-01	ci left: 1.296234e-02	ci right 1.485178e-02	k: 833	n:60000
KS ci ratio: 3.068516e-02	ci left: 2.105416e-01	ci right 2.171194e-01	k: 12829	n:60000
GCN1L1   60000 perm   28 sec   (2125 perm/sec)   p_kst 2.138167e-01   p_cons 1.388333e-02   p_joint 3.905000e-02

Joint ci ratio: 7.905985e-02	ci left: 3.258559e-02	ci right 3.528180e-02	k: 2374	n:70000
Cons ci ratio: 1.242108e-01	ci left: 1.315653e-02	ci right 1.491267e-02	k: 981	n:70000
KS ci ratio: 2.820216e-02	ci left: 2.132404e-01	ci right 2.193545e-01	k: 15140	n:70000
GCN1L1   70000 perm   33 sec   (2137 perm/sec)   p_kst 2.162857e-01   p_cons 1.401429e-02   p_joint 3.391429e-02

Joint ci ratio: 7.023826e-02	ci left: 3.615718e-02	ci right 3.880149e-02	k: 2997	n:80000
Cons ci ratio: 1.137111e-01	ci left: 1.380452e-02	ci right 1.548094e-02	k: 1170	n:80000
KS ci ratio: 2.642456e-02	ci left: 2.128788e-01	ci right 2.185918e-01	k: 17258	n:80000
GCN1L1   80000 perm   37 sec   (2143 perm/sec)   p_kst 2.157250e-01   p_cons 1.462500e-02   p_joint 3.746250e-02

Joint ci ratio: 6.411511e-02	ci left: 3.859776e-02	ci right 4.116533e-02	k: 3588	n:90000
Cons ci ratio: 1.077226e-01	ci left: 1.371833e-02	ci right 1.529097e-02	k: 1304	n:90000
KS ci ratio: 2.491608e-02	ci left: 2.130054e-01	ci right 2.183907e-01	k: 19412	n:90000
GCN1L1   90000 perm   42 sec   (2143 perm/sec)   p_kst 2.156889e-01   p_cons 1.448889e-02   p_joint 3.986667e-02

Joint ci ratio: 5.912935e-02	ci left: 4.085378e-02	ci right 4.335286e-02	k: 4209	n:100000
Cons ci ratio: 1.023380e-01	ci left: 1.371947e-02	ci right 1.520889e-02	k: 1445	n:100000
KS ci ratio: 2.361445e-02	ci left: 2.134726e-01	ci right 2.185838e-01	k: 21602	n:100000
GCN1L1   100000 perm   47 sec   (2140 perm/sec)   p_kst 2.160200e-01   p_cons 1.445000e-02   p_joint 4.209000e-02

Joint ci ratio: 5.866305e-02	ci left: 3.786357e-02	ci right 4.016082e-02	k: 4290	n:110000
Cons ci ratio: 9.722259e-02	ci left: 1.385509e-02	ci right 1.527976e-02	k: 1601	n:110000
KS ci ratio: 2.247888e-02	ci left: 2.141415e-01	ci right 2.190189e-01	k: 23823	n:110000
GCN1L1   110000 perm   52 sec   (2134 perm/sec)   p_kst 2.165727e-01   p_cons 1.455455e-02   p_joint 3.900000e-02

Outputting figure to mutsig2_images.part000000000069/GCN1L1.16_8248_110000_0.21657_0.014555_0.039.png
                gene_name: GCN1L1
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 2 percent done.
GBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
GBA3   10000 perm   2 sec   (4665 perm/sec)   p_kst 1.600000e-03   p_cons 1.990000e-01   p_joint 9.900000e-03

Joint ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
Cons ci ratio: 5.178460e-02	ci left: 2.168999e-01	ci right 2.284808e-01	k: 4453	n:20000
KS ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
GBA3   20000 perm   5 sec   (4215 perm/sec)   p_kst 1.350000e-03   p_cons 2.226500e-01   p_joint 7.050000e-03

Joint ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
Cons ci ratio: 4.208362e-02	ci left: 2.195901e-01	ci right 2.290633e-01	k: 6729	n:30000
KS ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
GBA3   30000 perm   7 sec   (4045 perm/sec)   p_kst 1.466667e-03   p_cons 2.243000e-01   p_joint 4.433333e-03

Joint ci ratio: 3.698817e-01	ci left: 2.283367e-03	ci right 3.340868e-03	k: 111	n:40000
Cons ci ratio: 3.628225e-02	ci left: 2.217846e-01	ci right 2.300052e-01	k: 9035	n:40000
KS ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
GBA3   40000 perm   10 sec   (3943 perm/sec)   p_kst 1.375000e-03   p_cons 2.258750e-01   p_joint 2.775000e-03

Joint ci ratio: 3.164248e-01	ci left: 2.576504e-03	ci right 3.562591e-03	k: 152	n:50000
Cons ci ratio: 3.423936e-02	ci left: 2.041315e-01	ci right 2.112625e-01	k: 10384	n:50000
KS ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
GBA3   50000 perm   13 sec   (3855 perm/sec)   p_kst 1.360000e-03   p_cons 2.076800e-01   p_joint 3.040000e-03

Joint ci ratio: 1.847162e-01	ci left: 6.761613e-03	ci right 8.153333e-03	k: 446	n:60000
Cons ci ratio: 2.956944e-02	ci left: 2.231889e-01	ci right 2.299042e-01	k: 13592	n:60000
KS ci ratio: 4.223979e-01	ci left: 1.131735e-03	ci right 1.751437e-03	k: 85	n:60000
GBA3   60000 perm   16 sec   (3779 perm/sec)   p_kst 1.416667e-03   p_cons 2.265333e-01   p_joint 7.433333e-03

Joint ci ratio: 1.804001e-01	ci left: 6.095399e-03	ci right 7.317460e-03	k: 468	n:70000
Cons ci ratio: 2.733755e-02	ci left: 2.239295e-01	ci right 2.301503e-01	k: 15892	n:70000
KS ci ratio: 3.956997e-01	ci left: 1.123860e-03	ci right 1.690196e-03	k: 97	n:70000
GBA3   70000 perm   19 sec   (3707 perm/sec)   p_kst 1.385714e-03   p_cons 2.270286e-01   p_joint 6.685714e-03

Joint ci ratio: 1.960012e-01	ci left: 4.487337e-03	ci right 5.474088e-03	k: 397	n:80000
Cons ci ratio: 2.560425e-02	ci left: 2.236903e-01	ci right 2.295045e-01	k: 18127	n:80000
KS ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
GBA3   80000 perm   22 sec   (3643 perm/sec)   p_kst 1.412500e-03   p_cons 2.265875e-01   p_joint 4.962500e-03

Joint ci ratio: 1.943465e-01	ci left: 4.062632e-03	ci right 4.947550e-03	k: 404	n:90000
Cons ci ratio: 2.415064e-02	ci left: 2.237023e-01	ci right 2.291820e-01	k: 20379	n:90000
KS ci ratio: 3.409400e-01	ci left: 1.217125e-03	ci right 1.726987e-03	k: 131	n:90000
GBA3   90000 perm   25 sec   (3582 perm/sec)   p_kst 1.455556e-03   p_cons 2.264333e-01   p_joint 4.488889e-03

Joint ci ratio: 1.943906e-01	ci left: 3.656293e-03	ci right 4.452897e-03	k: 404	n:100000
Cons ci ratio: 2.459863e-02	ci left: 2.000229e-01	ci right 2.050144e-01	k: 20251	n:100000
KS ci ratio: 3.241830e-01	ci left: 1.223731e-03	ci right 1.705930e-03	k: 145	n:100000
GBA3   100000 perm   28 sec   (3521 perm/sec)   p_kst 1.450000e-03   p_cons 2.025100e-01   p_joint 4.040000e-03

Joint ci ratio: 1.946679e-01	ci left: 3.315196e-03	ci right 4.038633e-03	k: 403	n:110000
Cons ci ratio: 2.241045e-02	ci left: 2.151736e-01	ci right 2.200594e-01	k: 23937	n:110000
KS ci ratio: 3.049412e-01	ci left: 1.271592e-03	ci right 1.737146e-03	k: 164	n:110000
GBA3   110000 perm   32 sec   (3468 perm/sec)   p_kst 1.490909e-03   p_cons 2.176091e-01   p_joint 3.663636e-03

Joint ci ratio: 1.509056e-01	ci left: 5.169563e-03	ci right 6.021265e-03	k: 670	n:120000
Cons ci ratio: 2.146120e-02	ci left: 2.152017e-01	ci right 2.198786e-01	k: 26104	n:120000
KS ci ratio: 2.952631e-01	ci left: 1.250390e-03	ci right 1.690934e-03	k: 175	n:120000
GBA3   120000 perm   35 sec   (3417 perm/sec)   p_kst 1.458333e-03   p_cons 2.175333e-01   p_joint 5.583333e-03

Joint ci ratio: 1.521974e-01	ci left: 4.690408e-03	ci right 5.470381e-03	k: 659	n:130000
Cons ci ratio: 2.060781e-02	ci left: 2.154821e-01	ci right 2.199766e-01	k: 28304	n:130000
KS ci ratio: 2.805053e-01	ci left: 1.289818e-03	ci right 1.717529e-03	k: 194	n:130000
GBA3   130000 perm   39 sec   (3368 perm/sec)   p_kst 1.492308e-03   p_cons 2.177231e-01   p_joint 5.069231e-03

Joint ci ratio: 1.570814e-01	ci left: 4.080616e-03	ci right 4.783010e-03	k: 619	n:140000
Cons ci ratio: 1.984874e-02	ci left: 2.157256e-01	ci right 2.200575e-01	k: 30504	n:140000
KS ci ratio: 2.722564e-01	ci left: 1.277462e-03	ci right 1.686489e-03	k: 206	n:140000
GBA3   140000 perm   42 sec   (3319 perm/sec)   p_kst 1.471429e-03   p_cons 2.178857e-01   p_joint 4.421429e-03

Joint ci ratio: 1.525980e-01	ci left: 4.045679e-03	ci right 4.720366e-03	k: 656	n:150000
Cons ci ratio: 1.917268e-02	ci left: 2.158529e-01	ci right 2.200380e-01	k: 32691	n:150000
KS ci ratio: 2.594101e-01	ci left: 1.322978e-03	ci right 1.723354e-03	k: 227	n:150000
GBA3   150000 perm   46 sec   (3272 perm/sec)   p_kst 1.513333e-03   p_cons 2.179400e-01   p_joint 4.373333e-03

Joint ci ratio: 1.554970e-01	ci left: 3.648547e-03	ci right 4.269640e-03	k: 632	n:160000
Cons ci ratio: 1.856812e-02	ci left: 2.158418e-01	ci right 2.198934e-01	k: 34858	n:160000
KS ci ratio: 2.517957e-01	ci left: 1.322187e-03	ci right 1.708737e-03	k: 241	n:160000
GBA3   160000 perm   50 sec   (3227 perm/sec)   p_kst 1.506250e-03   p_cons 2.178625e-01   p_joint 3.950000e-03

Joint ci ratio: 1.511436e-01	ci left: 3.643224e-03	ci right 4.244476e-03	k: 669	n:170000
Cons ci ratio: 1.801051e-02	ci left: 2.159630e-01	ci right 2.198937e-01	k: 37047	n:170000
KS ci ratio: 2.424549e-01	ci left: 1.349259e-03	ci right 1.726891e-03	k: 260	n:170000
GBA3   170000 perm   53 sec   (3184 perm/sec)   p_kst 1.529412e-03   p_cons 2.179235e-01   p_joint 3.935294e-03

Joint ci ratio: 1.475562e-01	ci left: 3.617301e-03	ci right 4.198856e-03	k: 702	n:180000
Cons ci ratio: 1.748321e-02	ci left: 2.164045e-01	ci right 2.202268e-01	k: 39296	n:180000
KS ci ratio: 2.362036e-01	ci left: 1.347415e-03	ci right 1.713385e-03	k: 274	n:180000
GBA3   180000 perm   57 sec   (3137 perm/sec)   p_kst 1.522222e-03   p_cons 2.183111e-01   p_joint 3.900000e-03

Joint ci ratio: 1.475714e-01	ci left: 3.426892e-03	ci right 3.977895e-03	k: 702	n:190000
Cons ci ratio: 1.700961e-02	ci left: 2.166016e-01	ci right 2.203228e-01	k: 41507	n:190000
KS ci ratio: 2.320259e-01	ci left: 1.326041e-03	ci right 1.678923e-03	k: 284	n:190000
GBA3   190000 perm   61 sec   (3093 perm/sec)   p_kst 1.494737e-03   p_cons 2.184579e-01   p_joint 3.694737e-03

Joint ci ratio: 1.502909e-01	ci left: 3.135169e-03	ci right 3.649390e-03	k: 677	n:200000
Cons ci ratio: 1.659025e-02	ci left: 2.164164e-01	ci right 2.200418e-01	k: 43645	n:200000
KS ci ratio: 2.242868e-01	ci left: 1.354027e-03	ci right 1.700678e-03	k: 304	n:200000
GBA3   200000 perm   66 sec   (3052 perm/sec)   p_kst 1.520000e-03   p_cons 2.182250e-01   p_joint 3.385000e-03

Joint ci ratio: 1.532802e-01	ci left: 2.866737e-03	ci right 3.347141e-03	k: 651	n:210000
Cons ci ratio: 1.618191e-02	ci left: 2.166392e-01	ci right 2.201781e-01	k: 45865	n:210000
KS ci ratio: 2.182850e-01	ci left: 1.366017e-03	ci right 1.705124e-03	k: 321	n:210000
GBA3   210000 perm   70 sec   (3008 perm/sec)   p_kst 1.528571e-03   p_cons 2.184048e-01   p_joint 3.100000e-03

Joint ci ratio: 1.496514e-01	ci left: 2.876374e-03	ci right 3.345960e-03	k: 683	n:220000
Cons ci ratio: 1.581852e-02	ci left: 2.164937e-01	ci right 2.199501e-01	k: 48008	n:220000
KS ci ratio: 2.127406e-01	ci left: 1.377029e-03	ci right 1.709054e-03	k: 338	n:220000
GBA3   220000 perm   74 sec   (2967 perm/sec)   p_kst 1.536364e-03   p_cons 2.182182e-01   p_joint 3.104545e-03

Joint ci ratio: 1.548569e-01	ci left: 2.563082e-03	ci right 2.997426e-03	k: 638	n:230000
Cons ci ratio: 1.546751e-02	ci left: 2.166045e-01	ci right 2.199852e-01	k: 50207	n:230000
KS ci ratio: 2.159615e-01	ci left: 1.276006e-03	ci right 1.588949e-03	k: 328	n:230000
GBA3   230000 perm   79 sec   (2928 perm/sec)   p_kst 1.426087e-03   p_cons 2.182913e-01   p_joint 2.773913e-03

Joint ci ratio: 1.571002e-01	ci left: 2.384196e-03	ci right 2.794630e-03	k: 620	n:240000
Cons ci ratio: 1.515664e-02	ci left: 2.163079e-01	ci right 2.196156e-01	k: 52310	n:240000
KS ci ratio: 2.108935e-01	ci left: 1.285943e-03	ci right 1.592966e-03	k: 344	n:240000
GBA3   240000 perm   83 sec   (2890 perm/sec)   p_kst 1.433333e-03   p_cons 2.179583e-01   p_joint 2.583333e-03

Joint ci ratio: 1.585221e-01	ci left: 2.246553e-03	ci right 2.637125e-03	k: 609	n:250000
Cons ci ratio: 1.484948e-02	ci left: 2.163628e-01	ci right 2.196037e-01	k: 54495	n:250000
KS ci ratio: 2.055968e-01	ci left: 1.302753e-03	ci right 1.604995e-03	k: 362	n:250000
GBA3   250000 perm   88 sec   (2853 perm/sec)   p_kst 1.448000e-03   p_cons 2.179800e-01   p_joint 2.436000e-03

Joint ci ratio: 1.540383e-01	ci left: 2.293199e-03	ci right 2.679563e-03	k: 645	n:260000
Cons ci ratio: 1.456289e-02	ci left: 2.163528e-01	ci right 2.195304e-01	k: 56664	n:260000
KS ci ratio: 2.006801e-01	ci left: 1.318358e-03	ci right 1.616010e-03	k: 380	n:260000
GBA3   260000 perm   92 sec   (2816 perm/sec)   p_kst 1.461538e-03   p_cons 2.179385e-01   p_joint 2.480769e-03

Joint ci ratio: 1.515951e-01	ci left: 2.283069e-03	ci right 2.661071e-03	k: 666	n:270000
Cons ci ratio: 1.429741e-02	ci left: 2.162221e-01	ci right 2.193395e-01	k: 58800	n:270000
KS ci ratio: 1.946399e-01	ci left: 1.354023e-03	ci right 1.649436e-03	k: 404	n:270000
GBA3   270000 perm   97 sec   (2783 perm/sec)   p_kst 1.496296e-03   p_cons 2.177778e-01   p_joint 2.466667e-03

Joint ci ratio: 1.520596e-01	ci left: 2.187779e-03	ci right 2.551215e-03	k: 662	n:280000
Cons ci ratio: 1.404196e-02	ci left: 2.161975e-01	ci right 2.192583e-01	k: 60963	n:280000
KS ci ratio: 1.906784e-01	ci left: 1.363451e-03	ci right 1.654166e-03	k: 421	n:280000
GBA3   280000 perm   102 sec   (2750 perm/sec)   p_kst 1.503571e-03   p_cons 2.177250e-01   p_joint 2.364286e-03

Joint ci ratio: 1.521809e-01	ci left: 2.109015e-03	ci right 2.459671e-03	k: 661	n:290000
Cons ci ratio: 1.379819e-02	ci left: 2.162129e-01	ci right 2.192204e-01	k: 63137	n:290000
KS ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
GBA3   290000 perm   107 sec   (2717 perm/sec)   p_kst 1.510345e-03   p_cons 2.177138e-01   p_joint 2.279310e-03

Joint ci ratio: 1.516139e-01	ci left: 2.054743e-03	ci right 2.394987e-03	k: 666	n:300000
Cons ci ratio: 1.383195e-02	ci left: 2.097206e-01	ci right 2.126450e-01	k: 63354	n:300000
KS ci ratio: 1.854790e-01	ci left: 1.348787e-03	ci right 1.627652e-03	k: 445	n:300000
GBA3   300000 perm   112 sec   (2686 perm/sec)   p_kst 1.483333e-03   p_cons 2.111800e-01   p_joint 2.220000e-03

Joint ci ratio: 1.497193e-01	ci left: 2.041231e-03	ci right 2.374635e-03	k: 683	n:310000
Cons ci ratio: 1.359003e-02	ci left: 2.101601e-01	ci right 2.130389e-01	k: 65595	n:310000
KS ci ratio: 1.830339e-01	ci left: 1.342202e-03	ci right 1.615641e-03	k: 457	n:310000
GBA3   310000 perm   117 sec   (2654 perm/sec)   p_kst 1.474194e-03   p_cons 2.115968e-01   p_joint 2.203226e-03

Joint ci ratio: 1.495056e-01	ci left: 1.983454e-03	ci right 2.306918e-03	k: 685	n:320000
Cons ci ratio: 1.337274e-02	ci left: 2.102638e-01	ci right 2.130976e-01	k: 67737	n:320000
KS ci ratio: 1.802992e-01	ci left: 1.342019e-03	ci right 1.610889e-03	k: 471	n:320000
GBA3   320000 perm   122 sec   (2621 perm/sec)   p_kst 1.471875e-03   p_cons 2.116781e-01   p_joint 2.140625e-03

Joint ci ratio: 1.508383e-01	ci left: 1.888345e-03	ci right 2.199291e-03	k: 673	n:330000
Cons ci ratio: 1.317165e-02	ci left: 2.102075e-01	ci right 2.129976e-01	k: 69828	n:330000
KS ci ratio: 1.765952e-01	ci left: 1.359252e-03	ci right 1.625383e-03	k: 491	n:330000
GBA3   330000 perm   127 sec   (2592 perm/sec)   p_kst 1.487879e-03   p_cons 2.116000e-01   p_joint 2.039394e-03

Joint ci ratio: 1.481153e-01	ci left: 1.903586e-03	ci right 2.210882e-03	k: 698	n:340000
Cons ci ratio: 1.297091e-02	ci left: 2.103719e-01	ci right 2.131213e-01	k: 71993	n:340000
KS ci ratio: 1.741353e-01	ci left: 1.358643e-03	ci right 1.620560e-03	k: 505	n:340000
GBA3   340000 perm   133 sec   (2563 perm/sec)   p_kst 1.485294e-03   p_cons 2.117441e-01   p_joint 2.052941e-03

Joint ci ratio: 1.463471e-01	ci left: 1.895980e-03	ci right 2.198074e-03	k: 715	n:350000
Cons ci ratio: 1.279144e-02	ci left: 2.102051e-01	ci right 2.129140e-01	k: 74045	n:350000
KS ci ratio: 1.719410e-01	ci left: 1.355358e-03	ci right 1.613008e-03	k: 518	n:350000
GBA3   350000 perm   138 sec   (2535 perm/sec)   p_kst 1.480000e-03   p_cons 2.115571e-01   p_joint 2.042857e-03

Joint ci ratio: 1.448390e-01	ci left: 1.883462e-03	ci right 2.180201e-03	k: 730	n:360000
Cons ci ratio: 1.261700e-02	ci left: 2.101060e-01	ci right 2.127764e-01	k: 76118	n:360000
KS ci ratio: 1.704707e-01	ci left: 1.341638e-03	ci right 1.594274e-03	k: 527	n:360000
GBA3   360000 perm   144 sec   (2507 perm/sec)   p_kst 1.463889e-03   p_cons 2.114389e-01   p_joint 2.027778e-03

Joint ci ratio: 1.329739e-01	ci left: 2.187395e-03	ci right 2.501561e-03	k: 866	n:370000
Cons ci ratio: 1.244457e-02	ci left: 2.101446e-01	ci right 2.127788e-01	k: 78240	n:370000
KS ci ratio: 1.682548e-01	ci left: 1.341611e-03	ci right 1.590626e-03	k: 541	n:370000
GBA3   370000 perm   149 sec   (2481 perm/sec)   p_kst 1.462162e-03   p_cons 2.114595e-01   p_joint 2.340541e-03

Joint ci ratio: 1.332866e-01	ci left: 2.119652e-03	ci right 2.424859e-03	k: 862	n:380000
Cons ci ratio: 1.227747e-02	ci left: 2.102235e-01	ci right 2.128230e-01	k: 80378	n:380000
KS ci ratio: 1.665738e-01	ci left: 1.334040e-03	ci right 1.578927e-03	k: 552	n:380000
GBA3   380000 perm   155 sec   (2455 perm/sec)   p_kst 1.452632e-03   p_cons 2.115211e-01   p_joint 2.268421e-03

Joint ci ratio: 1.322955e-01	ci left: 2.097526e-03	ci right 2.397126e-03	k: 875	n:390000
Cons ci ratio: 1.212391e-02	ci left: 2.101066e-01	ci right 2.126720e-01	k: 82441	n:390000
KS ci ratio: 1.649422e-01	ci left: 1.326868e-03	ci right 1.567816e-03	k: 563	n:390000
GBA3   390000 perm   161 sec   (2429 perm/sec)   p_kst 1.443590e-03   p_cons 2.113872e-01   p_joint 2.243590e-03

Joint ci ratio: 1.304468e-01	ci left: 2.105534e-03	ci right 2.401750e-03	k: 900	n:400000
Cons ci ratio: 1.197705e-02	ci left: 2.099659e-01	ci right 2.124983e-01	k: 84492	n:400000
KS ci ratio: 1.632155e-01	ci left: 1.322464e-03	ci right 1.559852e-03	k: 575	n:400000
GBA3   400000 perm   166 sec   (2404 perm/sec)   p_kst 1.437500e-03   p_cons 2.112300e-01   p_joint 2.250000e-03

Joint ci ratio: 1.313298e-01	ci left: 2.025865e-03	ci right 2.312951e-03	k: 888	n:410000
Cons ci ratio: 1.182562e-02	ci left: 2.101072e-01	ci right 2.126090e-01	k: 86656	n:410000
KS ci ratio: 1.601836e-01	ci left: 1.341697e-03	ci right 1.577633e-03	k: 597	n:410000
GBA3   410000 perm   172 sec   (2379 perm/sec)   p_kst 1.456098e-03   p_cons 2.113561e-01   p_joint 2.165854e-03

Joint ci ratio: 1.082607e-01	ci left: 2.943388e-03	ci right 3.282572e-03	k: 1306	n:420000
Cons ci ratio: 1.168420e-02	ci left: 2.101161e-01	ci right 2.125879e-01	k: 88767	n:420000
KS ci ratio: 1.526976e-01	ci left: 1.447026e-03	ci right 1.688505e-03	k: 657	n:420000
GBA3   420000 perm   178 sec   (2356 perm/sec)   p_kst 1.564286e-03   p_cons 2.113500e-01   p_joint 3.109524e-03

Joint ci ratio: 1.070394e-01	ci left: 2.942826e-03	ci right 3.277879e-03	k: 1336	n:430000
Cons ci ratio: 1.154839e-02	ci left: 2.101061e-01	ci right 2.125489e-01	k: 90870	n:430000
KS ci ratio: 1.506505e-01	ci left: 1.453646e-03	ci right 1.692685e-03	k: 675	n:430000
GBA3   430000 perm   184 sec   (2333 perm/sec)   p_kst 1.569767e-03   p_cons 2.113256e-01   p_joint 3.106977e-03

Joint ci ratio: 1.099257e-01	ci left: 2.723363e-03	ci right 3.042330e-03	k: 1267	n:440000
Cons ci ratio: 1.140950e-02	ci left: 2.103213e-01	ci right 2.127370e-01	k: 93072	n:440000
KS ci ratio: 1.488986e-01	ci left: 1.455610e-03	ci right 1.691941e-03	k: 691	n:440000
GBA3   440000 perm   190 sec   (2311 perm/sec)   p_kst 1.570455e-03   p_cons 2.115273e-01   p_joint 2.879545e-03

Joint ci ratio: 1.198075e-01	ci left: 2.231110e-03	ci right 2.517580e-03	k: 1067	n:450000
Cons ci ratio: 1.127415e-02	ci left: 2.105671e-01	ci right 2.129567e-01	k: 95292	n:450000
KS ci ratio: 1.530554e-01	ci left: 1.344140e-03	ci right 1.569024e-03	k: 654	n:450000
GBA3   450000 perm   197 sec   (2289 perm/sec)   p_kst 1.453333e-03   p_cons 2.117600e-01   p_joint 2.371111e-03

Joint ci ratio: 1.194190e-01	ci left: 2.197367e-03	ci right 2.478525e-03	k: 1074	n:460000
Cons ci ratio: 1.114757e-02	ci left: 2.106807e-01	ci right 2.130446e-01	k: 97456	n:460000
KS ci ratio: 1.511066e-01	ci left: 1.350470e-03	ci right 1.573276e-03	k: 671	n:460000
GBA3   460000 perm   203 sec   (2267 perm/sec)   p_kst 1.458696e-03   p_cons 2.118609e-01   p_joint 2.334783e-03

Joint ci ratio: 1.201523e-01	ci left: 2.123779e-03	ci right 2.397308e-03	k: 1061	n:470000
Cons ci ratio: 1.102691e-02	ci left: 2.107367e-01	ci right 2.130754e-01	k: 99595	n:470000
KS ci ratio: 1.496662e-01	ci left: 1.348356e-03	ci right 1.568502e-03	k: 684	n:470000
GBA3   470000 perm   209 sec   (2246 perm/sec)   p_kst 1.455319e-03   p_cons 2.119043e-01   p_joint 2.257447e-03

Joint ci ratio: 1.187076e-01	ci left: 2.132083e-03	ci right 2.403148e-03	k: 1087	n:480000
Cons ci ratio: 1.090682e-02	ci left: 2.108902e-01	ci right 2.132050e-01	k: 101782	n:480000
KS ci ratio: 1.473180e-01	ci left: 1.364396e-03	ci right 1.583359e-03	k: 706	n:480000
GBA3   480000 perm   216 sec   (2224 perm/sec)   p_kst 1.470833e-03   p_cons 2.120458e-01   p_joint 2.264583e-03

Joint ci ratio: 1.180058e-01	ci left: 2.114315e-03	ci right 2.381421e-03	k: 1100	n:490000
Cons ci ratio: 1.079512e-02	ci left: 2.108970e-01	ci right 2.131880e-01	k: 103900	n:490000
KS ci ratio: 1.444827e-01	ci left: 1.391610e-03	ci right 1.610271e-03	k: 734	n:490000
GBA3   490000 perm   222 sec   (2203 perm/sec)   p_kst 1.497959e-03   p_cons 2.120408e-01   p_joint 2.244898e-03

Joint ci ratio: 1.169487e-01	ci left: 2.110853e-03	ci right 2.374968e-03	k: 1120	n:500000
Cons ci ratio: 1.068652e-02	ci left: 2.109117e-01	ci right 2.131797e-01	k: 106022	n:500000
KS ci ratio: 1.429352e-01	ci left: 1.394627e-03	ci right 1.611215e-03	k: 750	n:500000
GBA3   500000 perm   229 sec   (2182 perm/sec)   p_kst 1.500000e-03   p_cons 2.120440e-01   p_joint 2.240000e-03

Joint ci ratio: 1.153133e-01	ci left: 2.130387e-03	ci right 2.392965e-03	k: 1152	n:510000
Cons ci ratio: 1.058126e-02	ci left: 2.109220e-01	ci right 2.131676e-01	k: 108142	n:510000
KS ci ratio: 1.411602e-01	ci left: 1.403213e-03	ci right 1.618200e-03	k: 769	n:510000
GBA3   510000 perm   236 sec   (2162 perm/sec)   p_kst 1.507843e-03   p_cons 2.120431e-01   p_joint 2.258824e-03

Joint ci ratio: 1.149170e-01	ci left: 2.104358e-03	ci right 2.362776e-03	k: 1160	n:520000
Cons ci ratio: 1.047676e-02	ci left: 2.110049e-01	ci right 2.132291e-01	k: 110300	n:520000
KS ci ratio: 1.394496e-01	ci left: 1.411484e-03	ci right 1.624901e-03	k: 788	n:520000
GBA3   520000 perm   243 sec   (2143 perm/sec)   p_kst 1.515385e-03   p_cons 2.121154e-01   p_joint 2.230769e-03

Joint ci ratio: 1.090088e-01	ci left: 2.301250e-03	ci right 2.568386e-03	k: 1289	n:530000
Cons ci ratio: 1.038145e-02	ci left: 2.108871e-01	ci right 2.130897e-01	k: 112353	n:530000
KS ci ratio: 1.383151e-01	ci left: 1.408528e-03	ci right 1.619622e-03	k: 801	n:530000
GBA3   530000 perm   250 sec   (2124 perm/sec)   p_kst 1.511321e-03   p_cons 2.119868e-01   p_joint 2.432075e-03

Joint ci ratio: 1.079264e-01	ci left: 2.305477e-03	ci right 2.570277e-03	k: 1315	n:540000
Cons ci ratio: 1.028909e-02	ci left: 2.107608e-01	ci right 2.129423e-01	k: 114399	n:540000
KS ci ratio: 1.373767e-01	ci left: 1.402112e-03	ci right 1.610702e-03	k: 812	n:540000
GBA3   540000 perm   257 sec   (2105 perm/sec)   p_kst 1.503704e-03   p_cons 2.118500e-01   p_joint 2.435185e-03

Joint ci ratio: 1.073175e-01	ci left: 2.290097e-03	ci right 2.551552e-03	k: 1330	n:550000
Cons ci ratio: 1.019498e-02	ci left: 2.107752e-01	ci right 2.129369e-01	k: 116520	n:550000
KS ci ratio: 1.361267e-01	ci left: 1.402959e-03	ci right 1.609622e-03	k: 827	n:550000
GBA3   550000 perm   264 sec   (2085 perm/sec)   p_kst 1.503636e-03   p_cons 2.118545e-01   p_joint 2.418182e-03

Joint ci ratio: 1.069180e-01	ci left: 2.266579e-03	ci right 2.524326e-03	k: 1340	n:560000
Cons ci ratio: 1.010228e-02	ci left: 2.108267e-01	ci right 2.129691e-01	k: 118662	n:560000
KS ci ratio: 1.350708e-01	ci left: 1.400333e-03	ci right 1.604880e-03	k: 840	n:560000
GBA3   560000 perm   271 sec   (2065 perm/sec)   p_kst 1.500000e-03   p_cons 2.118964e-01   p_joint 2.392857e-03

Joint ci ratio: 1.066813e-01	ci left: 2.237058e-03	ci right 2.490849e-03	k: 1346	n:570000
Cons ci ratio: 1.001390e-02	ci left: 2.108152e-01	ci right 2.129386e-01	k: 120769	n:570000
KS ci ratio: 1.341965e-01	ci left: 1.394413e-03	ci right 1.596673e-03	k: 851	n:570000
GBA3   570000 perm   278 sec   (2047 perm/sec)   p_kst 1.492982e-03   p_cons 2.118754e-01   p_joint 2.361404e-03

Joint ci ratio: 1.075268e-01	ci left: 2.163247e-03	ci right 2.410732e-03	k: 1325	n:580000
Cons ci ratio: 9.928213e-03	ci left: 2.107904e-01	ci right 2.128953e-01	k: 122868	n:580000
KS ci ratio: 1.323444e-01	ci left: 1.410372e-03	ci right 1.611901e-03	k: 875	n:580000
GBA3   580000 perm   286 sec   (2029 perm/sec)   p_kst 1.508621e-03   p_cons 2.118414e-01   p_joint 2.284483e-03

Joint ci ratio: 1.068846e-01	ci left: 2.152972e-03	ci right 2.397719e-03	k: 1341	n:590000
Cons ci ratio: 9.843937e-03	ci left: 2.107918e-01	ci right 2.128788e-01	k: 124982	n:590000
KS ci ratio: 1.314474e-01	ci left: 1.406135e-03	ci right 1.605591e-03	k: 887	n:590000
GBA3   590000 perm   293 sec   (2011 perm/sec)   p_kst 1.503390e-03   p_cons 2.118339e-01   p_joint 2.272881e-03

Joint ci ratio: 1.060971e-01	ci left: 2.149535e-03	ci right 2.391978e-03	k: 1361	n:600000
Cons ci ratio: 9.759677e-03	ci left: 2.108649e-01	ci right 2.129346e-01	k: 127139	n:600000
KS ci ratio: 1.307141e-01	ci left: 1.398819e-03	ci right 1.596044e-03	k: 897	n:600000
GBA3   600000 perm   301 sec   (1994 perm/sec)   p_kst 1.495000e-03   p_cons 2.118983e-01   p_joint 2.268333e-03

Joint ci ratio: 1.047962e-01	ci left: 2.168565e-03	ci right 2.409971e-03	k: 1395	n:610000
Cons ci ratio: 9.680015e-03	ci left: 2.108505e-01	ci right 2.129031e-01	k: 129244	n:610000
KS ci ratio: 1.294231e-01	ci left: 1.404436e-03	ci right 1.600347e-03	k: 915	n:610000
GBA3   610000 perm   309 sec   (1976 perm/sec)   p_kst 1.500000e-03   p_cons 2.118754e-01   p_joint 2.286885e-03

Joint ci ratio: 1.050246e-01	ci left: 2.124163e-03	ci right 2.361172e-03	k: 1389	n:620000
Cons ci ratio: 9.602550e-03	ci left: 2.108270e-01	ci right 2.128628e-01	k: 131343	n:620000
KS ci ratio: 1.285145e-01	ci left: 1.402075e-03	ci right 1.596179e-03	k: 928	n:620000
GBA3   620000 perm   316 sec   (1960 perm/sec)   p_kst 1.496774e-03   p_cons 2.118435e-01   p_joint 2.240323e-03

Joint ci ratio: 1.041293e-01	ci left: 2.127545e-03	ci right 2.362784e-03	k: 1413	n:630000
Cons ci ratio: 9.524696e-03	ci left: 2.108819e-01	ci right 2.129017e-01	k: 133491	n:630000
KS ci ratio: 1.274894e-01	ci left: 1.402867e-03	ci right 1.595414e-03	k: 943	n:630000
GBA3   630000 perm   324 sec   (1944 perm/sec)   p_kst 1.496825e-03   p_cons 2.118905e-01   p_joint 2.242857e-03

Joint ci ratio: 1.038006e-01	ci left: 2.107998e-03	ci right 2.340295e-03	k: 1422	n:640000
Cons ci ratio: 9.450563e-03	ci left: 2.108697e-01	ci right 2.128735e-01	k: 135597	n:640000
KS ci ratio: 1.267534e-01	ci left: 1.397588e-03	ci right 1.588220e-03	k: 954	n:640000
GBA3   640000 perm   332 sec   (1927 perm/sec)   p_kst 1.490625e-03   p_cons 2.118703e-01   p_joint 2.221875e-03

Joint ci ratio: 1.036565e-01	ci left: 2.081560e-03	ci right 2.310606e-03	k: 1426	n:650000
Cons ci ratio: 9.380425e-03	ci left: 2.107765e-01	ci right 2.127645e-01	k: 137650	n:650000
KS ci ratio: 1.257696e-01	ci left: 1.398435e-03	ci right 1.587591e-03	k: 969	n:650000
GBA3   650000 perm   340 sec   (1910 perm/sec)   p_kst 1.490769e-03   p_cons 2.117692e-01   p_joint 2.193846e-03

Joint ci ratio: 1.031523e-01	ci left: 2.070684e-03	ci right 2.297358e-03	k: 1440	n:660000
Cons ci ratio: 9.307852e-03	ci left: 2.108284e-01	ci right 2.128014e-01	k: 139797	n:660000
KS ci ratio: 1.248718e-01	ci left: 1.397794e-03	ci right 1.585414e-03	k: 983	n:660000
GBA3   660000 perm   348 sec   (1894 perm/sec)   p_kst 1.489394e-03   p_cons 2.118136e-01   p_joint 2.181818e-03

Joint ci ratio: 1.023388e-01	ci left: 2.073224e-03	ci right 2.298279e-03	k: 1463	n:670000
Cons ci ratio: 9.239086e-03	ci left: 2.108013e-01	ci right 2.127594e-01	k: 141892	n:670000
KS ci ratio: 1.236830e-01	ci left: 1.404408e-03	ci right 1.590990e-03	k: 1002	n:670000
GBA3   670000 perm   357 sec   (1879 perm/sec)   p_kst 1.495522e-03   p_cons 2.117791e-01   p_joint 2.183582e-03

Joint ci ratio: 1.018881e-01	ci left: 2.061365e-03	ci right 2.284087e-03	k: 1476	n:680000
Cons ci ratio: 9.170003e-03	ci left: 2.108411e-01	ci right 2.127849e-01	k: 144032	n:680000
KS ci ratio: 1.231933e-01	ci left: 1.395156e-03	ci right 1.579721e-03	k: 1010	n:680000
GBA3   680000 perm   365 sec   (1863 perm/sec)   p_kst 1.485294e-03   p_cons 2.118118e-01   p_joint 2.170588e-03

Joint ci ratio: 1.017861e-01	ci left: 2.035725e-03	ci right 2.255444e-03	k: 1479	n:690000
Cons ci ratio: 9.105372e-03	ci left: 2.107728e-01	ci right 2.127021e-01	k: 146098	n:690000
KS ci ratio: 1.226491e-01	ci left: 1.387578e-03	ci right 1.570271e-03	k: 1019	n:690000
GBA3   690000 perm   373 sec   (1849 perm/sec)   p_kst 1.476812e-03   p_cons 2.117362e-01   p_joint 2.143478e-03

Joint ci ratio: 1.016501e-01	ci left: 2.012211e-03	ci right 2.229085e-03	k: 1483	n:700000
Cons ci ratio: 9.039147e-03	ci left: 2.108148e-01	ci right 2.127304e-01	k: 148240	n:700000
KS ci ratio: 1.216982e-01	ci left: 1.389914e-03	ci right 1.571394e-03	k: 1035	n:700000
GBA3   700000 perm   382 sec   (1835 perm/sec)   p_kst 1.478571e-03   p_cons 2.117714e-01   p_joint 2.118571e-03

Joint ci ratio: 1.025559e-01	ci left: 1.948182e-03	ci right 2.160139e-03	k: 1457	n:710000
Cons ci ratio: 8.976050e-03	ci left: 2.107924e-01	ci right 2.126944e-01	k: 150337	n:710000
KS ci ratio: 1.205970e-01	ci left: 1.396288e-03	ci right 1.576833e-03	k: 1054	n:710000
GBA3   710000 perm   390 sec   (1820 perm/sec)   p_kst 1.484507e-03   p_cons 2.117423e-01   p_joint 2.052113e-03

Joint ci ratio: 1.033055e-01	ci left: 1.892706e-03	ci right 2.100223e-03	k: 1436	n:720000
Cons ci ratio: 8.913329e-03	ci left: 2.108054e-01	ci right 2.126941e-01	k: 152459	n:720000
KS ci ratio: 1.200864e-01	ci left: 1.389019e-03	ci right 1.567809e-03	k: 1063	n:720000
GBA3   720000 perm   399 sec   (1805 perm/sec)   p_kst 1.476389e-03   p_cons 2.117486e-01   p_joint 1.994444e-03

Joint ci ratio: 1.041454e-01	ci left: 1.836086e-03	ci right 2.039132e-03	k: 1413	n:730000
Cons ci ratio: 8.850162e-03	ci left: 2.108837e-01	ci right 2.127597e-01	k: 154629	n:730000
KS ci ratio: 1.194707e-01	ci left: 1.384608e-03	ci right 1.561852e-03	k: 1074	n:730000
GBA3   730000 perm   408 sec   (1791 perm/sec)   p_kst 1.471233e-03   p_cons 2.118205e-01   p_joint 1.935616e-03

Joint ci ratio: 9.391831e-02	ci left: 2.238317e-03	ci right 2.460202e-03	k: 1737	n:740000
Cons ci ratio: 8.790417e-03	ci left: 2.108803e-01	ci right 2.127436e-01	k: 156740	n:740000
KS ci ratio: 1.184284e-01	ci left: 1.390809e-03	ci right 1.567185e-03	k: 1093	n:740000
GBA3   740000 perm   416 sec   (1778 perm/sec)   p_kst 1.477027e-03   p_cons 2.118108e-01   p_joint 2.347297e-03

Joint ci ratio: 9.314409e-02	ci left: 2.246235e-03	ci right 2.466970e-03	k: 1766	n:750000
Cons ci ratio: 8.733017e-03	ci left: 2.108332e-01	ci right 2.126837e-01	k: 158818	n:750000
KS ci ratio: 1.175187e-01	ci left: 1.394263e-03	ci right 1.569624e-03	k: 1110	n:750000
GBA3   750000 perm   425 sec   (1764 perm/sec)   p_kst 1.480000e-03   p_cons 2.117573e-01   p_joint 2.354667e-03

Joint ci ratio: 9.259564e-02	ci left: 2.243669e-03	ci right 2.462783e-03	k: 1787	n:760000
Cons ci ratio: 8.673718e-03	ci left: 2.109029e-01	ci right 2.127414e-01	k: 160984	n:760000
KS ci ratio: 1.168372e-01	ci left: 1.392521e-03	ci right 1.566578e-03	k: 1123	n:760000
GBA3   760000 perm   434 sec   (1751 perm/sec)   p_kst 1.477632e-03   p_cons 2.118211e-01   p_joint 2.351316e-03

Joint ci ratio: 9.187876e-02	ci left: 2.250056e-03	ci right 2.468001e-03	k: 1815	n:770000
Cons ci ratio: 8.617453e-03	ci left: 2.108995e-01	ci right 2.127260e-01	k: 163095	n:770000
KS ci ratio: 1.155081e-01	ci left: 1.407222e-03	ci right 1.580979e-03	k: 1149	n:770000
GBA3   770000 perm   443 sec   (1738 perm/sec)   p_kst 1.492208e-03   p_cons 2.118117e-01   p_joint 2.357143e-03

Joint ci ratio: 9.130243e-02	ci left: 2.250021e-03	ci right 2.466522e-03	k: 1838	n:780000
Cons ci ratio: 8.562729e-03	ci left: 2.108783e-01	ci right 2.126930e-01	k: 165192	n:780000
KS ci ratio: 1.149599e-01	ci left: 1.402876e-03	ci right 1.575219e-03	k: 1160	n:780000
GBA3   780000 perm   452 sec   (1724 perm/sec)   p_kst 1.487179e-03   p_cons 2.117846e-01   p_joint 2.356410e-03

Joint ci ratio: 9.081018e-02	ci left: 2.246279e-03	ci right 2.461193e-03	k: 1858	n:790000
Cons ci ratio: 8.507261e-03	ci left: 2.109272e-01	ci right 2.127306e-01	k: 167344	n:790000
KS ci ratio: 1.143217e-01	ci left: 1.401102e-03	ci right 1.572207e-03	k: 1173	n:790000
GBA3   790000 perm   462 sec   (1712 perm/sec)   p_kst 1.484810e-03   p_cons 2.118278e-01   p_joint 2.351899e-03

Joint ci ratio: 9.027765e-02	ci left: 2.245078e-03	ci right 2.458551e-03	k: 1880	n:800000
Cons ci ratio: 8.453268e-03	ci left: 2.109588e-01	ci right 2.127508e-01	k: 169483	n:800000
KS ci ratio: 1.137902e-01	ci left: 1.396946e-03	ci right 1.566696e-03	k: 1184	n:800000
GBA3   800000 perm   471 sec   (1699 perm/sec)   p_kst 1.480000e-03   p_cons 2.118538e-01   p_joint 2.350000e-03

Joint ci ratio: 8.644750e-02	ci left: 2.422611e-03	ci right 2.642699e-03	k: 2050	n:810000
Cons ci ratio: 8.402216e-03	ci left: 2.109131e-01	ci right 2.126939e-01	k: 171560	n:810000
KS ci ratio: 1.131239e-01	ci left: 1.396493e-03	ci right 1.565129e-03	k: 1198	n:810000
GBA3   810000 perm   480 sec   (1687 perm/sec)   p_kst 1.479012e-03   p_cons 2.118025e-01   p_joint 2.530864e-03

Joint ci ratio: 8.598773e-02	ci left: 2.419318e-03	ci right 2.637879e-03	k: 2072	n:820000
Cons ci ratio: 8.352231e-03	ci left: 2.108625e-01	ci right 2.126322e-01	k: 173632	n:820000
KS ci ratio: 1.124693e-01	ci left: 1.396054e-03	ci right 1.563597e-03	k: 1212	n:820000
GBA3   820000 perm   489 sec   (1675 perm/sec)   p_kst 1.478049e-03   p_cons 2.117463e-01   p_joint 2.526829e-03

Joint ci ratio: 8.543308e-02	ci left: 2.422002e-03	ci right 2.639324e-03	k: 2099	n:830000
Cons ci ratio: 8.301029e-03	ci left: 2.108973e-01	ci right 2.126565e-01	k: 175774	n:830000
KS ci ratio: 1.118259e-01	ci left: 1.395629e-03	ci right 1.562098e-03	k: 1226	n:830000
GBA3   830000 perm   499 sec   (1663 perm/sec)   p_kst 1.477108e-03   p_cons 2.117759e-01   p_joint 2.528916e-03

Joint ci ratio: 8.515029e-02	ci left: 2.409479e-03	ci right 2.624926e-03	k: 2113	n:840000
Cons ci ratio: 8.250404e-03	ci left: 2.109457e-01	ci right 2.126944e-01	k: 177928	n:840000
KS ci ratio: 1.111934e-01	ci left: 1.395216e-03	ci right 1.560633e-03	k: 1240	n:840000
GBA3   840000 perm   509 sec   (1651 perm/sec)   p_kst 1.476190e-03   p_cons 2.118190e-01   p_joint 2.515476e-03

Joint ci ratio: 8.479044e-02	ci left: 2.401859e-03	ci right 2.615672e-03	k: 2131	n:850000
Cons ci ratio: 8.203151e-03	ci left: 2.108930e-01	ci right 2.126313e-01	k: 179997	n:850000
KS ci ratio: 1.107484e-01	ci left: 1.390240e-03	ci right 1.554364e-03	k: 1250	n:850000
GBA3   850000 perm   518 sec   (1640 perm/sec)   p_kst 1.470588e-03   p_cons 2.117612e-01   p_joint 2.507059e-03

Joint ci ratio: 8.419986e-02	ci left: 2.408077e-03	ci right 2.620877e-03	k: 2161	n:860000
Cons ci ratio: 8.151418e-03	ci left: 2.110576e-01	ci right 2.127862e-01	k: 182252	n:860000
KS ci ratio: 1.100903e-01	ci left: 1.391034e-03	ci right 1.554214e-03	k: 1265	n:860000
GBA3   860000 perm   528 sec   (1630 perm/sec)   p_kst 1.470930e-03   p_cons 2.119209e-01   p_joint 2.512791e-03

Joint ci ratio: 8.489274e-02	ci left: 2.341015e-03	ci right 2.549676e-03	k: 2126	n:870000
Cons ci ratio: 8.102880e-03	ci left: 2.111266e-01	ci right 2.128454e-01	k: 184427	n:870000
KS ci ratio: 1.093584e-01	ci left: 1.394049e-03	ci right 1.556425e-03	k: 1282	n:870000
GBA3   870000 perm   537 sec   (1619 perm/sec)   p_kst 1.473563e-03   p_cons 2.119851e-01   p_joint 2.443678e-03

Joint ci ratio: 8.430005e-02	ci left: 2.347783e-03	ci right 2.555514e-03	k: 2156	n:880000
Cons ci ratio: 8.055501e-03	ci left: 2.111816e-01	ci right 2.128908e-01	k: 186591	n:880000
KS ci ratio: 1.087666e-01	ci left: 1.393683e-03	ci right 1.555082e-03	k: 1296	n:880000
GBA3   880000 perm   547 sec   (1608 perm/sec)   p_kst 1.472727e-03   p_cons 2.120352e-01   p_joint 2.450000e-03

Joint ci ratio: 8.441899e-02	ci left: 2.314802e-03	ci right 2.519918e-03	k: 2150	n:890000
Cons ci ratio: 8.010800e-03	ci left: 2.111580e-01	ci right 2.128574e-01	k: 188686	n:890000
KS ci ratio: 1.080194e-01	ci left: 1.397700e-03	ci right 1.558381e-03	k: 1314	n:890000
GBA3   890000 perm   557 sec   (1598 perm/sec)   p_kst 1.476404e-03   p_cons 2.120067e-01   p_joint 2.415730e-03

Joint ci ratio: 8.385539e-02	ci left: 2.320627e-03	ci right 2.524819e-03	k: 2179	n:900000
Cons ci ratio: 7.966545e-03	ci left: 2.111471e-01	ci right 2.128370e-01	k: 190792	n:900000
KS ci ratio: 1.074895e-01	ci left: 1.396225e-03	ci right 1.555900e-03	k: 1327	n:900000
GBA3   900000 perm   567 sec   (1587 perm/sec)   p_kst 1.474444e-03   p_cons 2.119911e-01   p_joint 2.421111e-03

Joint ci ratio: 7.730616e-02	ci left: 2.708634e-03	ci right 2.927517e-03	k: 2563	n:910000
Cons ci ratio: 7.924448e-03	ci left: 2.110761e-01	ci right 2.127565e-01	k: 192843	n:910000
KS ci ratio: 1.068875e-01	ci left: 1.396924e-03	ci right 1.555727e-03	k: 1342	n:910000
GBA3   910000 perm   577 sec   (1576 perm/sec)   p_kst 1.474725e-03   p_cons 2.119154e-01   p_joint 2.816484e-03

Joint ci ratio: 7.888084e-02	ci left: 2.571546e-03	ci right 2.783778e-03	k: 2462	n:920000
Cons ci ratio: 7.881139e-03	ci left: 2.110859e-01	ci right 2.127572e-01	k: 194967	n:920000
KS ci ratio: 1.063348e-01	ci left: 1.396551e-03	ci right 1.554440e-03	k: 1356	n:920000
GBA3   920000 perm   587 sec   (1566 perm/sec)   p_kst 1.473913e-03   p_cons 2.119207e-01   p_joint 2.676087e-03

Joint ci ratio: 7.834166e-02	ci left: 2.579736e-03	ci right 2.791122e-03	k: 2496	n:930000
Cons ci ratio: 7.838229e-03	ci left: 2.111085e-01	ci right 2.127707e-01	k: 197103	n:930000
KS ci ratio: 1.055594e-01	ci left: 1.402470e-03	ci right 1.559800e-03	k: 1376	n:930000
GBA3   930000 perm   598 sec   (1556 perm/sec)   p_kst 1.479570e-03   p_cons 2.119387e-01   p_joint 2.683871e-03

Joint ci ratio: 7.862744e-02	ci left: 2.533517e-03	ci right 2.741907e-03	k: 2478	n:940000
Cons ci ratio: 7.795218e-03	ci left: 2.111645e-01	ci right 2.128181e-01	k: 199271	n:940000
KS ci ratio: 1.047633e-01	ci left: 1.409304e-03	ci right 1.566134e-03	k: 1397	n:940000
GBA3   940000 perm   608 sec   (1545 perm/sec)   p_kst 1.486170e-03   p_cons 2.119904e-01   p_joint 2.636170e-03

Joint ci ratio: 8.128509e-02	ci left: 2.342816e-03	ci right 2.542342e-03	k: 2319	n:950000
Cons ci ratio: 7.753421e-03	ci left: 2.111974e-01	ci right 2.128423e-01	k: 201418	n:950000
KS ci ratio: 1.040583e-01	ci left: 1.413947e-03	ci right 1.570171e-03	k: 1416	n:950000
GBA3   950000 perm   619 sec   (1536 perm/sec)   p_kst 1.490526e-03   p_cons 2.120189e-01   p_joint 2.441053e-03

Joint ci ratio: 8.085062e-02	ci left: 2.343925e-03	ci right 2.542429e-03	k: 2344	n:960000
Cons ci ratio: 7.712408e-03	ci left: 2.112244e-01	ci right 2.128607e-01	k: 203560	n:960000
KS ci ratio: 1.032954e-01	ci left: 1.420526e-03	ci right 1.576256e-03	k: 1437	n:960000
GBA3   960000 perm   629 sec   (1526 perm/sec)   p_kst 1.496875e-03   p_cons 2.120417e-01   p_joint 2.441667e-03

Joint ci ratio: 8.090353e-02	ci left: 2.316730e-03	ci right 2.513065e-03	k: 2341	n:970000
Cons ci ratio: 7.673034e-03	ci left: 2.112076e-01	ci right 2.128354e-01	k: 205660	n:970000
KS ci ratio: 1.025490e-01	ci left: 1.426974e-03	ci right 1.582213e-03	k: 1458	n:970000
GBA3   970000 perm   640 sec   (1516 perm/sec)   p_kst 1.503093e-03   p_cons 2.120206e-01   p_joint 2.413402e-03

Joint ci ratio: 8.042404e-02	ci left: 2.321085e-03	ci right 2.516569e-03	k: 2369	n:980000
Cons ci ratio: 7.633511e-03	ci left: 2.112237e-01	ci right 2.128433e-01	k: 207792	n:980000
KS ci ratio: 1.020952e-01	ci left: 1.425339e-03	ci right 1.579672e-03	k: 1471	n:980000
GBA3   980000 perm   650 sec   (1507 perm/sec)   p_kst 1.501020e-03   p_cons 2.120327e-01   p_joint 2.417347e-03

Joint ci ratio: 7.986955e-02	ci left: 2.330305e-03	ci right 2.525150e-03	k: 2402	n:990000
Cons ci ratio: 7.595120e-03	ci left: 2.112164e-01	ci right 2.128277e-01	k: 209901	n:990000
KS ci ratio: 1.013064e-01	ci left: 1.433583e-03	ci right 1.587539e-03	k: 1494	n:990000
GBA3   990000 perm   661 sec   (1497 perm/sec)   p_kst 1.509091e-03   p_cons 2.120212e-01   p_joint 2.426263e-03

Joint ci ratio: 7.952296e-02	ci left: 2.327583e-03	ci right 2.521317e-03	k: 2423	n:1000000
Cons ci ratio: 7.557416e-03	ci left: 2.112042e-01	ci right 2.128074e-01	k: 212005	n:1000000
KS ci ratio: 1.007352e-01	ci left: 1.435818e-03	ci right 1.589093e-03	k: 1511	n:1000000
GBA3   1000000 perm   672 sec   (1488 perm/sec)   p_kst 1.511000e-03   p_cons 2.120050e-01   p_joint 2.423000e-03

Joint ci ratio: 7.916462e-02	ci left: 2.325888e-03	ci right 2.518567e-03	k: 2445	n:1010000
Cons ci ratio: 7.520112e-03	ci left: 2.111993e-01	ci right 2.127945e-01	k: 214116	n:1010000
KS ci ratio: 1.004040e-01	ci left: 1.431254e-03	ci right 1.583509e-03	k: 1521	n:1010000
GBA3   1010000 perm   683 sec   (1479 perm/sec)   p_kst 1.505941e-03   p_cons 2.119960e-01   p_joint 2.420792e-03

Joint ci ratio: 8.178809e-02	ci left: 2.155135e-03	ci right 2.339867e-03	k: 2291	n:1020000
Cons ci ratio: 7.482455e-03	ci left: 2.112345e-01	ci right 2.128220e-01	k: 216268	n:1020000
KS ci ratio: 9.991288e-02	ci left: 1.431559e-03	ci right 1.583059e-03	k: 1536	n:1020000
GBA3   1020000 perm   694 sec   (1470 perm/sec)   p_kst 1.505882e-03   p_cons 2.120275e-01   p_joint 2.246078e-03

Outputting figure to mutsig2_images.part000000000069/GBA3.12_1430_1020000_0.0015059_0.21203_0.0022461.png
                gene_name: GBA3
               theta_stop: 0.100 
                    nperm: 1020000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0023 

Current progress: 3 percent done.
GARNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
Cons ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
KS ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
GARNL3   10000 perm   2 sec   (4358 perm/sec)   p_kst 5.646000e-01   p_cons 4.250000e-02   p_joint 1.786000e-01

Joint ci ratio: 6.752543e-02	ci left: 1.393091e-01	ci right 1.490946e-01	k: 2883	n:20000
Cons ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
KS ci ratio: 2.401965e-02	ci left: 5.642060e-01	ci right 5.779733e-01	k: 11422	n:20000
GARNL3   20000 perm   5 sec   (3926 perm/sec)   p_kst 5.711000e-01   p_cons 4.450000e-02   p_joint 1.441500e-01

Joint ci ratio: 5.189481e-02	ci left: 1.556371e-01	ci right 1.639623e-01	k: 4793	n:30000
Cons ci ratio: 1.006797e-01	ci left: 4.567332e-02	ci right 5.054801e-02	k: 1442	n:30000
KS ci ratio: 1.969120e-02	ci left: 5.635066e-01	ci right 5.747467e-01	k: 17074	n:30000
GARNL3   30000 perm   8 sec   (3780 perm/sec)   p_kst 5.691333e-01   p_cons 4.806667e-02   p_joint 1.597667e-01

Joint ci ratio: 4.620932e-02	ci left: 1.489402e-01	ci right 1.560103e-01	k: 6098	n:40000
Cons ci ratio: 8.764713e-02	ci left: 4.553384e-02	ci right 4.973214e-02	k: 1904	n:40000
KS ci ratio: 1.706485e-02	ci left: 5.639293e-01	ci right 5.736607e-01	k: 22752	n:40000
GARNL3   40000 perm   11 sec   (3683 perm/sec)   p_kst 5.688000e-01   p_cons 4.760000e-02   p_joint 1.524500e-01

Outputting figure to mutsig2_images.part000000000069/GARNL3.10_3154_40000_0.5688_0.0476_0.15245.png
                gene_name: GARNL3
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 5 percent done.
GBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
KS ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
GBP4   10000 perm   2 sec   (4518 perm/sec)   p_kst 7.792000e-01   p_cons 7.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GBP4.9_1967_10000_0.7792_0.7173_1.png
                gene_name: GBP4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
GBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
GBP5   10000 perm   2 sec   (5013 perm/sec)   p_kst 2.794000e-01   p_cons 3.900000e-02   p_joint 8.090000e-02

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
KS ci ratio: 4.354540e-02	ci left: 2.820284e-01	ci right 2.946332e-01	k: 5766	n:20000
GBP5   20000 perm   4 sec   (4537 perm/sec)   p_kst 2.883000e-01   p_cons 3.595000e-02   p_joint 7.025000e-02

Joint ci ratio: 8.302460e-02	ci left: 6.628788e-02	ci right 7.206256e-02	k: 2074	n:30000
Cons ci ratio: 1.179083e-01	ci left: 3.343453e-02	ci right 3.765603e-02	k: 1065	n:30000
KS ci ratio: 3.585008e-02	ci left: 2.798299e-01	ci right 2.900784e-01	k: 8548	n:30000
GBP5   30000 perm   7 sec   (4355 perm/sec)   p_kst 2.849333e-01   p_cons 3.550000e-02   p_joint 6.913333e-02

Joint ci ratio: 5.215472e-02	ci left: 1.205131e-01	ci right 1.269916e-01	k: 4949	n:40000
Cons ci ratio: 1.000970e-01	ci left: 3.507376e-02	ci right 3.879386e-02	k: 1476	n:40000
KS ci ratio: 3.094962e-02	ci left: 2.817987e-01	ci right 2.906824e-01	k: 11449	n:40000
GBP5   40000 perm   9 sec   (4213 perm/sec)   p_kst 2.862250e-01   p_cons 3.690000e-02   p_joint 1.237250e-01

Joint ci ratio: 6.977250e-02	ci left: 5.730443e-02	ci right 6.146691e-02	k: 2968	n:50000
Cons ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
KS ci ratio: 2.764363e-02	ci left: 2.828382e-01	ci right 2.907865e-01	k: 14340	n:50000
GBP5   50000 perm   12 sec   (4114 perm/sec)   p_kst 2.868000e-01   p_cons 3.414000e-02   p_joint 5.936000e-02

Outputting figure to mutsig2_images.part000000000069/GBP5.9_1801_50000_0.2868_0.03414_0.05936.png
                gene_name: GBP5
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 8 percent done.
GCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
Cons ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
KS ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
GCC2   10000 perm   3 sec   (3533 perm/sec)   p_kst 3.379000e-01   p_cons 3.988000e-01   p_joint 3.538000e-01

Outputting figure to mutsig2_images.part000000000069/GCC2.9_5147_10000_0.3379_0.3988_0.3538.png
                gene_name: GCC2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 9 percent done.
GATAD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
GATAD2B   10000 perm   2 sec   (5453 perm/sec)   p_kst 1.454000e-01   p_cons 4.509000e-01   p_joint 2.933000e-01

Outputting figure to mutsig2_images.part000000000069/GATAD2B.8_1822_10000_0.1454_0.4509_0.2933.png
                gene_name: GATAD2B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
GC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
GC   10000 perm   2 sec   (5220 perm/sec)   p_kst 2.250000e-02   p_cons 2.100000e-03   p_joint 0

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 5.428855e-01	ci left: 1.899214e-03	ci right 3.351433e-03	k: 51	n:20000
KS ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
GC   20000 perm   4 sec   (4693 perm/sec)   p_kst 2.460000e-02   p_cons 2.550000e-03   p_joint 4.950000e-03

Joint ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
Cons ci ratio: 4.551208e-01	ci left: 1.907815e-03	ci right 3.058593e-03	k: 73	n:30000
KS ci ratio: 1.414321e-01	ci left: 2.319840e-02	ci right 2.676107e-02	k: 748	n:30000
GC   30000 perm   7 sec   (4476 perm/sec)   p_kst 2.493333e-02   p_cons 2.433333e-03   p_joint 4.233333e-03

Joint ci ratio: 3.132347e-01	ci left: 3.289902e-03	ci right 4.533824e-03	k: 155	n:40000
Cons ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
KS ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
GC   40000 perm   9 sec   (4338 perm/sec)   p_kst 2.457500e-02   p_cons 2.175000e-03   p_joint 3.875000e-03

Joint ci ratio: 3.153926e-01	ci left: 2.594922e-03	ci right 3.584166e-03	k: 153	n:50000
Cons ci ratio: 3.767908e-01	ci left: 1.754103e-03	ci right 2.585394e-03	k: 107	n:50000
KS ci ratio: 1.101584e-01	ci left: 2.333774e-02	ci right 2.607782e-02	k: 1234	n:50000
GC   50000 perm   12 sec   (4217 perm/sec)   p_kst 2.468000e-02   p_cons 2.140000e-03   p_joint 3.060000e-03

Joint ci ratio: 3.186008e-01	ci left: 2.116325e-03	ci right 2.932983e-03	k: 150	n:60000
Cons ci ratio: 3.369973e-01	ci left: 1.871544e-03	ci right 2.644532e-03	k: 134	n:60000
KS ci ratio: 1.010157e-01	ci left: 2.324520e-02	ci right 2.573442e-02	k: 1468	n:60000
GC   60000 perm   15 sec   (4122 perm/sec)   p_kst 2.446667e-02   p_cons 2.233333e-03   p_joint 2.500000e-03

Joint ci ratio: 3.251986e-01	ci left: 1.735145e-03	ci right 2.421465e-03	k: 144	n:70000
Cons ci ratio: 3.115041e-01	ci left: 1.906053e-03	ci right 2.621922e-03	k: 157	n:70000
KS ci ratio: 9.436790e-02	ci left: 2.292071e-02	ci right 2.520469e-02	k: 1683	n:70000
GC   70000 perm   17 sec   (4037 perm/sec)   p_kst 2.404286e-02   p_cons 2.242857e-03   p_joint 2.057143e-03

Joint ci ratio: 3.166081e-01	ci left: 1.610181e-03	ci right 2.226838e-03	k: 152	n:80000
Cons ci ratio: 2.959980e-01	ci left: 1.864105e-03	ci right 2.522831e-03	k: 174	n:80000
KS ci ratio: 8.823961e-02	ci left: 2.301163e-02	ci right 2.514807e-02	k: 1925	n:80000
GC   80000 perm   20 sec   (3958 perm/sec)   p_kst 2.406250e-02   p_cons 2.175000e-03   p_joint 1.900000e-03

Joint ci ratio: 1.823023e-01	ci left: 4.645081e-03	ci right 5.587250e-03	k: 459	n:90000
Cons ci ratio: 2.754990e-01	ci left: 1.935518e-03	ci right 2.563920e-03	k: 201	n:90000
KS ci ratio: 8.358432e-02	ci left: 2.285752e-02	ci right 2.486222e-02	k: 2146	n:90000
GC   90000 perm   23 sec   (3883 perm/sec)   p_kst 2.384444e-02   p_cons 2.233333e-03   p_joint 5.100000e-03

Joint ci ratio: 1.833530e-01	ci left: 4.132759e-03	ci right 4.976374e-03	k: 454	n:100000
Cons ci ratio: 2.633949e-01	ci left: 1.919135e-03	ci right 2.510332e-03	k: 220	n:100000
KS ci ratio: 7.942403e-02	ci left: 2.283469e-02	ci right 2.473307e-02	k: 2377	n:100000
GC   100000 perm   26 sec   (3814 perm/sec)   p_kst 2.377000e-02   p_cons 2.200000e-03   p_joint 4.540000e-03

Joint ci ratio: 1.794724e-01	ci left: 3.930578e-03	ci right 4.714092e-03	k: 474	n:110000
Cons ci ratio: 2.476396e-01	ci left: 1.991445e-03	ci right 2.562578e-03	k: 249	n:110000
KS ci ratio: 7.596321e-02	ci left: 2.273774e-02	ci right 2.454204e-02	k: 2599	n:110000
GC   110000 perm   29 sec   (3746 perm/sec)   p_kst 2.362727e-02   p_cons 2.263636e-03   p_joint 4.309091e-03

Joint ci ratio: 3.518430e-01	ci left: 8.519454e-04	ci right 1.222849e-03	k: 123	n:120000
Cons ci ratio: 2.382941e-01	ci left: 1.982013e-03	ci right 2.525823e-03	k: 269	n:120000
KS ci ratio: 7.243377e-02	ci left: 2.296131e-02	ci right 2.469514e-02	k: 2858	n:120000
GC   120000 perm   33 sec   (3687 perm/sec)   p_kst 2.381667e-02   p_cons 2.241667e-03   p_joint 1.025000e-03

Joint ci ratio: 1.944820e-01	ci left: 2.812411e-03	ci right 3.425469e-03	k: 404	n:130000
Cons ci ratio: 2.241942e-01	ci left: 2.083209e-03	ci right 2.616300e-03	k: 304	n:130000
KS ci ratio: 6.964110e-02	ci left: 2.296309e-02	ci right 2.462748e-02	k: 3092	n:130000
GC   130000 perm   36 sec   (3630 perm/sec)   p_kst 2.378462e-02   p_cons 2.338462e-03   p_joint 3.107692e-03

Joint ci ratio: 1.878735e-01	ci left: 2.808754e-03	ci right 3.397838e-03	k: 433	n:140000
Cons ci ratio: 2.132781e-01	ci left: 2.150472e-03	ci right 2.670479e-03	k: 336	n:140000
KS ci ratio: 6.701439e-02	ci left: 2.305704e-02	ci right 2.466276e-02	k: 3339	n:140000
GC   140000 perm   39 sec   (3572 perm/sec)   p_kst 2.385000e-02   p_cons 2.400000e-03   p_joint 3.092857e-03

Joint ci ratio: 1.962303e-01	ci left: 2.392987e-03	ci right 2.919864e-03	k: 397	n:150000
Cons ci ratio: 2.178789e-01	ci left: 1.918787e-03	ci right 2.394118e-03	k: 322	n:150000
KS ci ratio: 6.471957e-02	ci left: 2.310013e-02	ci right 2.465168e-02	k: 3580	n:150000
GC   150000 perm   43 sec   (3516 perm/sec)   p_kst 2.386667e-02   p_cons 2.146667e-03   p_joint 2.646667e-03

Joint ci ratio: 1.914823e-01	ci left: 2.362355e-03	ci right 2.868437e-03	k: 417	n:160000
Cons ci ratio: 2.126788e-01	ci left: 1.893469e-03	ci right 2.349873e-03	k: 338	n:160000
KS ci ratio: 6.247816e-02	ci left: 2.326174e-02	ci right 2.476808e-02	k: 3841	n:160000
GC   160000 perm   46 sec   (3465 perm/sec)   p_kst 2.400625e-02   p_cons 2.112500e-03   p_joint 2.606250e-03

Joint ci ratio: 1.990373e-01	ci left: 2.049918e-03	ci right 2.508497e-03	k: 386	n:170000
Cons ci ratio: 2.058105e-01	ci left: 1.910297e-03	ci right 2.354015e-03	k: 361	n:170000
KS ci ratio: 6.053775e-02	ci left: 2.334140e-02	ci right 2.480431e-02	k: 4091	n:170000
GC   170000 perm   50 sec   (3415 perm/sec)   p_kst 2.406471e-02   p_cons 2.123529e-03   p_joint 2.270588e-03

Joint ci ratio: 1.985365e-01	ci left: 1.946581e-03	ci right 2.380814e-03	k: 388	n:180000
Cons ci ratio: 2.008788e-01	ci left: 1.899076e-03	ci right 2.328323e-03	k: 379	n:180000
KS ci ratio: 5.889976e-02	ci left: 2.330881e-02	ci right 2.472880e-02	k: 4322	n:180000
GC   180000 perm   53 sec   (3365 perm/sec)   p_kst 2.401111e-02   p_cons 2.105556e-03   p_joint 2.155556e-03

Joint ci ratio: 1.580713e-01	ci left: 2.971244e-03	ci right 3.486203e-03	k: 612	n:190000
Cons ci ratio: 1.960388e-01	ci left: 1.894156e-03	ci right 2.310743e-03	k: 398	n:190000
KS ci ratio: 5.721437e-02	ci left: 2.342025e-02	ci right 2.480485e-02	k: 4580	n:190000
GC   190000 perm   57 sec   (3318 perm/sec)   p_kst 2.410526e-02   p_cons 2.094737e-03   p_joint 3.221053e-03

Joint ci ratio: 1.666155e-01	ci left: 2.530016e-03	ci right 2.994583e-03	k: 551	n:200000
Cons ci ratio: 1.917625e-01	ci left: 1.885078e-03	ci right 2.289571e-03	k: 416	n:200000
KS ci ratio: 5.586730e-02	ci left: 2.335338e-02	ci right 2.470047e-02	k: 4804	n:200000
GC   200000 perm   61 sec   (3269 perm/sec)   p_kst 2.402000e-02   p_cons 2.080000e-03   p_joint 2.755000e-03

Joint ci ratio: 1.621239e-01	ci left: 2.551088e-03	ci right 3.005666e-03	k: 582	n:210000
Cons ci ratio: 1.873234e-01	ci left: 1.886032e-03	ci right 2.280295e-03	k: 436	n:210000
KS ci ratio: 5.447805e-02	ci left: 2.340599e-02	ci right 2.472148e-02	k: 5052	n:210000
GC   210000 perm   65 sec   (3223 perm/sec)   p_kst 2.405714e-02   p_cons 2.076190e-03   p_joint 2.771429e-03

Joint ci ratio: 1.672450e-01	ci left: 2.282567e-03	ci right 2.703439e-03	k: 547	n:220000
Cons ci ratio: 1.827785e-01	ci left: 1.895672e-03	ci right 2.281271e-03	k: 458	n:220000
KS ci ratio: 5.319782e-02	ci left: 2.344522e-02	ci right 2.473100e-02	k: 5298	n:220000
GC   220000 perm   69 sec   (3180 perm/sec)   p_kst 2.408182e-02   p_cons 2.081818e-03   p_joint 2.486364e-03

Joint ci ratio: 1.700773e-01	ci left: 2.108351e-03	ci right 2.504358e-03	k: 529	n:230000
Cons ci ratio: 1.798655e-01	ci left: 1.875507e-03	ci right 2.250262e-03	k: 473	n:230000
KS ci ratio: 5.204229e-02	ci left: 2.344703e-02	ci right 2.470413e-02	k: 5536	n:230000
GC   230000 perm   73 sec   (3135 perm/sec)   p_kst 2.406957e-02   p_cons 2.056522e-03   p_joint 2.300000e-03

Joint ci ratio: 1.657535e-01	ci left: 2.132270e-03	ci right 2.521572e-03	k: 557	n:240000
Cons ci ratio: 1.760087e-01	ci left: 1.880965e-03	ci right 2.247894e-03	k: 494	n:240000
KS ci ratio: 5.094085e-02	ci left: 2.346542e-02	ci right 2.469611e-02	k: 5778	n:240000
GC   240000 perm   78 sec   (3093 perm/sec)   p_kst 2.407500e-02   p_cons 2.058333e-03   p_joint 2.320833e-03

Joint ci ratio: 1.476373e-01	ci left: 2.604355e-03	ci right 3.023303e-03	k: 702	n:250000
Cons ci ratio: 1.618820e-01	ci left: 2.150553e-03	ci right 2.533130e-03	k: 584	n:250000
KS ci ratio: 4.989801e-02	ci left: 2.349051e-02	ci right 2.469656e-02	k: 6022	n:250000
GC   250000 perm   82 sec   (3051 perm/sec)   p_kst 2.408800e-02   p_cons 2.336000e-03   p_joint 2.808000e-03

Joint ci ratio: 1.453817e-01	ci left: 2.585700e-03	ci right 2.994740e-03	k: 724	n:260000
Cons ci ratio: 1.587907e-01	ci left: 2.152752e-03	ci right 2.527710e-03	k: 607	n:260000
KS ci ratio: 4.895675e-02	ci left: 2.347590e-02	ci right 2.465782e-02	k: 6256	n:260000
GC   260000 perm   86 sec   (3010 perm/sec)   p_kst 2.406154e-02   p_cons 2.334615e-03   p_joint 2.784615e-03

Joint ci ratio: 1.508039e-01	ci left: 2.308016e-03	ci right 2.687974e-03	k: 673	n:270000
Cons ci ratio: 1.558700e-01	ci left: 2.154852e-03	ci right 2.522627e-03	k: 630	n:270000
KS ci ratio: 4.810480e-02	ci left: 2.342597e-02	ci right 2.458428e-02	k: 6480	n:270000
GC   270000 perm   91 sec   (2971 perm/sec)   p_kst 2.400000e-02   p_cons 2.333333e-03   p_joint 2.492593e-03

Joint ci ratio: 1.486164e-01	ci left: 2.294338e-03	ci right 2.666079e-03	k: 693	n:280000
Cons ci ratio: 1.538136e-01	ci left: 2.136253e-03	ci right 2.495600e-03	k: 647	n:280000
KS ci ratio: 4.729582e-02	ci left: 2.337977e-02	ci right 2.451583e-02	k: 6704	n:280000
GC   280000 perm   95 sec   (2933 perm/sec)   p_kst 2.394286e-02   p_cons 2.310714e-03   p_joint 2.475000e-03

Joint ci ratio: 1.479829e-01	ci left: 2.235140e-03	ci right 2.595609e-03	k: 699	n:290000
Cons ci ratio: 1.512675e-01	ci left: 2.135556e-03	ci right 2.488301e-03	k: 669	n:290000
KS ci ratio: 4.647139e-02	ci left: 2.339146e-02	ci right 2.450774e-02	k: 6944	n:290000
GC   290000 perm   100 sec   (2897 perm/sec)   p_kst 2.394483e-02   p_cons 2.306897e-03   p_joint 2.410345e-03

Joint ci ratio: 1.455095e-01	ci left: 2.237698e-03	ci right 2.592023e-03	k: 723	n:300000
Cons ci ratio: 1.482012e-01	ci left: 2.154209e-03	ci right 2.502183e-03	k: 697	n:300000
KS ci ratio: 4.560091e-02	ci left: 2.349152e-02	ci right 2.459103e-02	k: 7211	n:300000
GC   300000 perm   105 sec   (2861 perm/sec)   p_kst 2.403667e-02   p_cons 2.323333e-03   p_joint 2.410000e-03

Joint ci ratio: 1.909190e-01	ci left: 1.228424e-03	ci right 1.490717e-03	k: 420	n:310000
Cons ci ratio: 1.464303e-01	ci left: 2.137534e-03	ci right 2.478328e-03	k: 714	n:310000
KS ci ratio: 4.577523e-02	ci left: 2.258042e-02	ci right 2.364142e-02	k: 7163	n:310000
GC   310000 perm   110 sec   (2826 perm/sec)   p_kst 2.310645e-02   p_cons 2.303226e-03   p_joint 1.354839e-03

Joint ci ratio: 1.891322e-01	ci left: 1.213846e-03	ci right 1.470321e-03	k: 428	n:320000
Cons ci ratio: 1.437406e-01	ci left: 2.152050e-03	ci right 2.488315e-03	k: 741	n:320000
KS ci ratio: 4.501413e-02	ci left: 2.262864e-02	ci right 2.367377e-02	k: 7407	n:320000
GC   320000 perm   115 sec   (2791 perm/sec)   p_kst 2.314688e-02   p_cons 2.315625e-03   p_joint 1.337500e-03

Joint ci ratio: 1.859095e-01	ci left: 1.220384e-03	ci right 1.473351e-03	k: 443	n:330000
Cons ci ratio: 1.415633e-01	ci left: 2.154046e-03	ci right 2.485094e-03	k: 764	n:330000
KS ci ratio: 4.435807e-02	ci left: 2.260513e-02	ci right 2.363357e-02	k: 7628	n:330000
GC   330000 perm   120 sec   (2760 perm/sec)   p_kst 2.311515e-02   p_cons 2.315152e-03   p_joint 1.342424e-03

Joint ci ratio: 1.971217e-01	ci left: 1.047267e-03	ci right 1.279017e-03	k: 394	n:340000
Cons ci ratio: 1.394821e-01	ci left: 2.155960e-03	ci right 2.482027e-03	k: 787	n:340000
KS ci ratio: 4.218496e-02	ci left: 2.424492e-02	ci right 2.529262e-02	k: 8420	n:340000
GC   340000 perm   125 sec   (2728 perm/sec)   p_kst 2.476471e-02   p_cons 2.314706e-03   p_joint 1.158824e-03

Joint ci ratio: 2.050749e-01	ci left: 9.359395e-04	ci right 1.152458e-03	k: 364	n:350000
Cons ci ratio: 1.374901e-01	ci left: 2.157799e-03	ci right 2.479101e-03	k: 810	n:350000
KS ci ratio: 4.156979e-02	ci left: 2.426184e-02	ci right 2.529462e-02	k: 8671	n:350000
GC   350000 perm   130 sec   (2696 perm/sec)   p_kst 2.477429e-02   p_cons 2.314286e-03   p_joint 1.040000e-03

Joint ci ratio: 2.082429e-01	ci left: 8.809641e-04	ci right 1.088314e-03	k: 353	n:360000
Cons ci ratio: 1.361549e-01	ci left: 2.140782e-03	ci right 2.456204e-03	k: 826	n:360000
KS ci ratio: 4.099725e-02	ci left: 2.425868e-02	ci right 2.527677e-02	k: 8915	n:360000
GC   360000 perm   135 sec   (2664 perm/sec)   p_kst 2.476389e-02   p_cons 2.294444e-03   p_joint 9.805556e-04

Joint ci ratio: 2.059295e-01	ci left: 8.776545e-04	ci right 1.081642e-03	k: 361	n:370000
Cons ci ratio: 1.339846e-01	ci left: 2.153431e-03	ci right 2.465256e-03	k: 853	n:370000
KS ci ratio: 4.045906e-02	ci left: 2.424240e-02	ci right 2.524614e-02	k: 9154	n:370000
GC   370000 perm   140 sec   (2634 perm/sec)   p_kst 2.474054e-02   p_cons 2.305405e-03   p_joint 9.756757e-04

Joint ci ratio: 2.017898e-01	ci left: 8.920179e-04	ci right 1.094663e-03	k: 376	n:380000
Cons ci ratio: 1.316903e-01	ci left: 2.173087e-03	ci right 2.481949e-03	k: 883	n:380000
KS ci ratio: 3.996553e-02	ci left: 2.419840e-02	ci right 2.518781e-02	k: 9382	n:380000
GC   380000 perm   146 sec   (2605 perm/sec)   p_kst 2.468947e-02   p_cons 2.323684e-03   p_joint 9.894737e-04

Joint ci ratio: 2.009935e-01	ci left: 8.764493e-04	ci right 1.074675e-03	k: 379	n:390000
Cons ci ratio: 1.301538e-01	ci left: 2.169449e-03	ci right 2.473918e-03	k: 904	n:390000
KS ci ratio: 3.943496e-02	ci left: 2.422275e-02	ci right 2.519971e-02	k: 9636	n:390000
GC   390000 perm   151 sec   (2576 perm/sec)   p_kst 2.470769e-02   p_cons 2.317949e-03   p_joint 9.717949e-04

Joint ci ratio: 1.477154e-01	ci left: 1.627661e-03	ci right 1.889641e-03	k: 702	n:400000
Cons ci ratio: 1.177616e-01	ci left: 2.599779e-03	ci right 2.927490e-03	k: 1104	n:400000
KS ci ratio: 3.892902e-02	ci left: 2.424102e-02	ci right 2.520589e-02	k: 9888	n:400000
GC   400000 perm   157 sec   (2549 perm/sec)   p_kst 2.472000e-02   p_cons 2.760000e-03   p_joint 1.755000e-03

Joint ci ratio: 1.457586e-01	ci left: 1.632602e-03	ci right 1.891594e-03	k: 721	n:410000
Cons ci ratio: 1.161432e-01	ci left: 2.609769e-03	ci right 2.933907e-03	k: 1135	n:410000
KS ci ratio: 3.844595e-02	ci left: 2.425363e-02	ci right 2.520676e-02	k: 10138	n:410000
GC   410000 perm   163 sec   (2520 perm/sec)   p_kst 2.472683e-02   p_cons 2.768293e-03   p_joint 1.758537e-03

Joint ci ratio: 1.471982e-01	ci left: 1.561615e-03	ci right 1.812007e-03	k: 707	n:420000
Cons ci ratio: 1.148863e-01	ci left: 2.605435e-03	ci right 2.925296e-03	k: 1160	n:420000
KS ci ratio: 3.794113e-02	ci left: 2.431525e-02	ci right 2.525798e-02	k: 10409	n:420000
GC   420000 perm   169 sec   (2492 perm/sec)   p_kst 2.478333e-02   p_cons 2.761905e-03   p_joint 1.683333e-03

Joint ci ratio: 1.458658e-01	ci left: 1.554422e-03	ci right 1.801208e-03	k: 720	n:430000
Cons ci ratio: 1.131919e-01	ci left: 2.623918e-03	ci right 2.940980e-03	k: 1195	n:430000
KS ci ratio: 3.749710e-02	ci left: 2.432109e-02	ci right 2.525277e-02	k: 10657	n:430000
GC   430000 perm   174 sec   (2466 perm/sec)   p_kst 2.478372e-02   p_cons 2.779070e-03   p_joint 1.674419e-03

Joint ci ratio: 1.475173e-01	ci left: 1.484061e-03	ci right 1.722579e-03	k: 704	n:440000
Cons ci ratio: 1.123508e-01	ci left: 2.604038e-03	ci right 2.916204e-03	k: 1213	n:440000
KS ci ratio: 3.705089e-02	ci left: 2.434924e-02	ci right 2.527067e-02	k: 10915	n:440000
GC   440000 perm   180 sec   (2441 perm/sec)   p_kst 2.480682e-02   p_cons 2.756818e-03   p_joint 1.600000e-03

Joint ci ratio: 1.515566e-01	ci left: 1.371930e-03	ci right 1.599011e-03	k: 667	n:450000
Cons ci ratio: 1.111669e-01	ci left: 2.602333e-03	ci right 2.910792e-03	k: 1239	n:450000
KS ci ratio: 3.660345e-02	ci left: 2.439823e-02	ci right 2.531012e-02	k: 11183	n:450000
GC   450000 perm   186 sec   (2416 perm/sec)   p_kst 2.485111e-02   p_cons 2.753333e-03   p_joint 1.482222e-03

Joint ci ratio: 1.566933e-01	ci left: 1.252225e-03	ci right 1.467178e-03	k: 624	n:460000
Cons ci ratio: 1.099761e-01	ci left: 2.602832e-03	ci right 2.907832e-03	k: 1266	n:460000
KS ci ratio: 3.618966e-02	ci left: 2.442145e-02	ci right 2.532368e-02	k: 11440	n:460000
GC   460000 perm   192 sec   (2391 perm/sec)   p_kst 2.486957e-02   p_cons 2.752174e-03   p_joint 1.356522e-03

Joint ci ratio: 1.554552e-01	ci left: 1.246027e-03	ci right 1.458069e-03	k: 634	n:470000
Cons ci ratio: 1.091191e-01	ci left: 2.588839e-03	ci right 2.889683e-03	k: 1286	n:470000
KS ci ratio: 3.578646e-02	ci left: 2.444796e-02	ci right 2.534089e-02	k: 11699	n:470000
GC   470000 perm   199 sec   (2367 perm/sec)   p_kst 2.489149e-02   p_cons 2.736170e-03   p_joint 1.348936e-03

Joint ci ratio: 1.561980e-01	ci left: 1.208054e-03	ci right 1.414708e-03	k: 628	n:480000
Cons ci ratio: 1.077868e-01	ci left: 2.599764e-03	ci right 2.897955e-03	k: 1318	n:480000
KS ci ratio: 3.541618e-02	ci left: 2.444656e-02	ci right 2.533002e-02	k: 11945	n:480000
GC   480000 perm   205 sec   (2344 perm/sec)   p_kst 2.488542e-02   p_cons 2.745833e-03   p_joint 1.308333e-03

Joint ci ratio: 1.681299e-01	ci left: 1.014994e-03	ci right 1.203230e-03	k: 542	n:490000
Cons ci ratio: 1.065813e-01	ci left: 2.606291e-03	ci right 2.901678e-03	k: 1348	n:490000
KS ci ratio: 3.507635e-02	ci left: 2.441896e-02	ci right 2.529279e-02	k: 12178	n:490000
GC   490000 perm   211 sec   (2321 perm/sec)   p_kst 2.485306e-02   p_cons 2.751020e-03   p_joint 1.106122e-03

Joint ci ratio: 1.664524e-01	ci left: 1.015773e-03	ci right 1.202086e-03	k: 553	n:500000
Cons ci ratio: 1.053770e-01	ci left: 2.614523e-03	ci right 2.907286e-03	k: 1379	n:500000
KS ci ratio: 3.474899e-02	ci left: 2.438854e-02	ci right 2.525297e-02	k: 12409	n:500000
GC   500000 perm   218 sec   (2298 perm/sec)   p_kst 2.481800e-02   p_cons 2.758000e-03   p_joint 1.106000e-03

Joint ci ratio: 1.649703e-01	ci left: 1.014650e-03	ci right 1.198936e-03	k: 563	n:510000
Cons ci ratio: 1.043983e-01	ci left: 2.612900e-03	ci right 2.902598e-03	k: 1405	n:510000
KS ci ratio: 3.438463e-02	ci left: 2.442352e-02	ci right 2.527993e-02	k: 12673	n:510000
GC   510000 perm   224 sec   (2276 perm/sec)   p_kst 2.484902e-02   p_cons 2.754902e-03   p_joint 1.103922e-03

Joint ci ratio: 1.629597e-01	ci left: 1.020956e-03	ci right 1.203906e-03	k: 577	n:520000
Cons ci ratio: 1.033740e-01	ci left: 2.615100e-03	ci right 2.902024e-03	k: 1433	n:520000
KS ci ratio: 3.408150e-02	ci left: 2.438663e-02	ci right 2.523406e-02	k: 12900	n:520000
GC   520000 perm   231 sec   (2255 perm/sec)   p_kst 2.480769e-02   p_cons 2.755769e-03   p_joint 1.109615e-03

Joint ci ratio: 1.687603e-01	ci left: 9.311579e-04	ci right 1.104560e-03	k: 538	n:530000
Cons ci ratio: 1.020996e-01	ci left: 2.631938e-03	ci right 2.916936e-03	k: 1469	n:530000
KS ci ratio: 3.374279e-02	ci left: 2.441292e-02	ci right 2.525267e-02	k: 13160	n:530000
GC   530000 perm   237 sec   (2235 perm/sec)   p_kst 2.483019e-02   p_cons 2.771698e-03   p_joint 1.015094e-03

Joint ci ratio: 1.673690e-01	ci left: 9.298798e-04	ci right 1.101472e-03	k: 547	n:540000
Cons ci ratio: 1.009720e-01	ci left: 2.642759e-03	ci right 2.925581e-03	k: 1502	n:540000
KS ci ratio: 3.341397e-02	ci left: 2.443827e-02	ci right 2.527054e-02	k: 13420	n:540000
GC   540000 perm   244 sec   (2214 perm/sec)   p_kst 2.485185e-02   p_cons 2.781481e-03   p_joint 1.012963e-03

Joint ci ratio: 1.661608e-01	ci left: 9.269112e-04	ci right 1.096597e-03	k: 555	n:550000
Cons ci ratio: 1.001428e-01	ci left: 2.639020e-03	ci right 2.918986e-03	k: 1527	n:550000
KS ci ratio: 3.311321e-02	ci left: 2.443568e-02	ci right 2.526024e-02	k: 13665	n:550000
GC   550000 perm   251 sec   (2193 perm/sec)   p_kst 2.484545e-02   p_cons 2.776364e-03   p_joint 1.009091e-03

Joint ci ratio: 1.697131e-01	ci left: 8.710116e-04	ci right 1.034222e-03	k: 532	n:560000
Cons ci ratio: 9.923770e-02	ci left: 2.640648e-03	ci right 2.918107e-03	k: 1555	n:560000
KS ci ratio: 3.281680e-02	ci left: 2.443854e-02	ci right 2.525567e-02	k: 13913	n:560000
GC   560000 perm   258 sec   (2173 perm/sec)   p_kst 2.484464e-02   p_cons 2.776786e-03   p_joint 9.500000e-04

Joint ci ratio: 1.684538e-01	ci left: 8.691718e-04	ci right 1.030707e-03	k: 540	n:570000
Cons ci ratio: 9.857533e-02	ci left: 2.630251e-03	ci right 2.904666e-03	k: 1576	n:570000
KS ci ratio: 3.253292e-02	ci left: 2.443437e-02	ci right 2.524416e-02	k: 14157	n:570000
GC   570000 perm   265 sec   (2153 perm/sec)   p_kst 2.483684e-02   p_cons 2.764912e-03   p_joint 9.473684e-04

Joint ci ratio: 1.666157e-01	ci left: 8.740084e-04	ci right 1.034492e-03	k: 552	n:580000
Cons ci ratio: 9.762023e-02	ci left: 2.637039e-03	ci right 2.909345e-03	k: 1607	n:580000
KS ci ratio: 3.227467e-02	ci left: 2.440300e-02	ci right 2.520521e-02	k: 14385	n:580000
GC   580000 perm   273 sec   (2127 perm/sec)   p_kst 2.480172e-02   p_cons 2.770690e-03   p_joint 9.517241e-04

Joint ci ratio: 1.652763e-01	ci left: 8.738155e-04	ci right 1.032845e-03	k: 561	n:590000
Cons ci ratio: 9.666279e-02	ci left: 2.645264e-03	ci right 2.915588e-03	k: 1639	n:590000
KS ci ratio: 3.199666e-02	ci left: 2.441139e-02	ci right 2.520684e-02	k: 14636	n:590000
GC   590000 perm   280 sec   (2107 perm/sec)   p_kst 2.480678e-02   p_cons 2.777966e-03   p_joint 9.508475e-04

Joint ci ratio: 1.121611e-01	ci left: 1.917689e-03	ci right 2.147162e-03	k: 1218	n:600000
Cons ci ratio: 9.573299e-02	ci left: 2.653227e-03	ci right 2.921610e-03	k: 1671	n:600000
KS ci ratio: 3.173665e-02	ci left: 2.440300e-02	ci right 2.519160e-02	k: 14877	n:600000
GC   600000 perm   287 sec   (2088 perm/sec)   p_kst 2.479500e-02   p_cons 2.785000e-03   p_joint 2.030000e-03

Joint ci ratio: 1.126735e-01	ci left: 1.868723e-03	ci right 2.093426e-03	k: 1207	n:610000
Cons ci ratio: 9.485742e-02	ci left: 2.659340e-03	ci right 2.925745e-03	k: 1702	n:610000
KS ci ratio: 3.145834e-02	ci left: 2.443232e-02	ci right 2.521482e-02	k: 15141	n:610000
GC   610000 perm   295 sec   (2070 perm/sec)   p_kst 2.482131e-02   p_cons 2.790164e-03   p_joint 1.978689e-03

Joint ci ratio: 1.215691e-01	ci left: 1.572395e-03	ci right 1.777468e-03	k: 1037	n:620000
Cons ci ratio: 9.416896e-02	ci left: 2.655817e-03	ci right 2.919831e-03	k: 1727	n:620000
KS ci ratio: 3.119243e-02	ci left: 2.445273e-02	ci right 2.522914e-02	k: 15400	n:620000
GC   620000 perm   302 sec   (2052 perm/sec)   p_kst 2.483871e-02   p_cons 2.785484e-03   p_joint 1.672581e-03

Joint ci ratio: 1.223405e-01	ci left: 1.527429e-03	ci right 1.727992e-03	k: 1024	n:630000
Cons ci ratio: 9.354881e-02	ci left: 2.649311e-03	ci right 2.910850e-03	k: 1750	n:630000
KS ci ratio: 3.094023e-02	ci left: 2.446148e-02	ci right 2.523178e-02	k: 15652	n:630000
GC   630000 perm   310 sec   (2034 perm/sec)   p_kst 2.484444e-02   p_cons 2.777778e-03   p_joint 1.625397e-03

Joint ci ratio: 1.213383e-01	ci left: 1.529316e-03	ci right 1.728364e-03	k: 1041	n:640000
Cons ci ratio: 9.278354e-02	ci left: 2.652173e-03	ci right 2.911735e-03	k: 1779	n:640000
KS ci ratio: 3.069801e-02	ci left: 2.446379e-02	ci right 2.522802e-02	k: 15900	n:640000
GC   640000 perm   317 sec   (2016 perm/sec)   p_kst 2.484375e-02   p_cons 2.779688e-03   p_joint 1.626562e-03

Joint ci ratio: 1.213399e-01	ci left: 1.505787e-03	ci right 1.701775e-03	k: 1041	n:650000
Cons ci ratio: 9.219019e-02	ci left: 2.645936e-03	ci right 2.903143e-03	k: 1802	n:650000
KS ci ratio: 3.044690e-02	ci left: 2.448895e-02	ci right 2.524760e-02	k: 16163	n:650000
GC   650000 perm   325 sec   (1999 perm/sec)   p_kst 2.486615e-02   p_cons 2.772308e-03   p_joint 1.601538e-03

Joint ci ratio: 1.213997e-01	ci left: 1.481501e-03	ci right 1.674431e-03	k: 1040	n:660000
Cons ci ratio: 9.158293e-02	ci left: 2.641374e-03	ci right 2.896355e-03	k: 1826	n:660000
KS ci ratio: 3.023963e-02	ci left: 2.445321e-02	ci right 2.520551e-02	k: 16386	n:660000
GC   660000 perm   333 sec   (1982 perm/sec)   p_kst 2.482727e-02   p_cons 2.766667e-03   p_joint 1.575758e-03

Joint ci ratio: 1.201930e-01	ci left: 1.489786e-03	ci right 1.681729e-03	k: 1061	n:670000
Cons ci ratio: 9.086453e-02	ci left: 2.644246e-03	ci right 2.897397e-03	k: 1855	n:670000
KS ci ratio: 3.002912e-02	ci left: 2.443041e-02	ci right 2.517669e-02	k: 16617	n:670000
GC   670000 perm   341 sec   (1965 perm/sec)   p_kst 2.480149e-02   p_cons 2.768657e-03   p_joint 1.583582e-03

Joint ci ratio: 1.213442e-01	ci left: 1.439352e-03	ci right 1.626701e-03	k: 1041	n:680000
Cons ci ratio: 9.016278e-02	ci left: 2.647042e-03	ci right 2.898400e-03	k: 1884	n:680000
KS ci ratio: 2.980481e-02	ci left: 2.443750e-02	ci right 2.517832e-02	k: 16868	n:680000
GC   680000 perm   349 sec   (1949 perm/sec)   p_kst 2.480588e-02   p_cons 2.770588e-03   p_joint 1.530882e-03

Joint ci ratio: 1.341352e-01	ci left: 1.153298e-03	ci right 1.320500e-03	k: 852	n:690000
Cons ci ratio: 8.943020e-02	ci left: 2.652598e-03	ci right 2.902330e-03	k: 1915	n:690000
KS ci ratio: 2.958988e-02	ci left: 2.443721e-02	ci right 2.517259e-02	k: 17114	n:690000
GC   690000 perm   357 sec   (1933 perm/sec)   p_kst 2.480290e-02   p_cons 2.775362e-03   p_joint 1.234783e-03

Joint ci ratio: 1.335110e-01	ci left: 1.147868e-03	ci right 1.313447e-03	k: 860	n:700000
Cons ci ratio: 8.873804e-02	ci left: 2.656607e-03	ci right 2.904679e-03	k: 1945	n:700000
KS ci ratio: 2.938648e-02	ci left: 2.442560e-02	ci right 2.515549e-02	k: 17352	n:700000
GC   700000 perm   365 sec   (1918 perm/sec)   p_kst 2.478857e-02   p_cons 2.778571e-03   p_joint 1.228571e-03

Joint ci ratio: 1.257775e-01	ci left: 1.280252e-03	ci right 1.453435e-03	k: 969	n:710000
Cons ci ratio: 8.799475e-02	ci left: 2.664642e-03	ci right 2.911274e-03	k: 1978	n:710000
KS ci ratio: 2.990081e-02	ci left: 2.328170e-02	ci right 2.398980e-02	k: 16780	n:710000
GC   710000 perm   373 sec   (1903 perm/sec)   p_kst 2.363380e-02   p_cons 2.785915e-03   p_joint 1.364789e-03

Joint ci ratio: 1.255844e-01	ci left: 1.266506e-03	ci right 1.437546e-03	k: 972	n:720000
Cons ci ratio: 8.759788e-02	ci left: 2.652083e-03	ci right 2.896389e-03	k: 1996	n:720000
KS ci ratio: 2.969186e-02	ci left: 2.328506e-02	ci right 2.398822e-02	k: 17017	n:720000
GC   720000 perm   381 sec   (1888 perm/sec)   p_kst 2.363472e-02   p_cons 2.772222e-03   p_joint 1.350000e-03

Joint ci ratio: 1.247538e-01	ci left: 1.266407e-03	ci right 1.436219e-03	k: 985	n:730000
Cons ci ratio: 8.681834e-02	ci left: 2.663994e-03	ci right 2.907102e-03	k: 2032	n:730000
KS ci ratio: 2.947761e-02	ci left: 2.330330e-02	ci right 2.400185e-02	k: 17265	n:730000
GC   730000 perm   390 sec   (1873 perm/sec)   p_kst 2.365068e-02   p_cons 2.783562e-03   p_joint 1.349315e-03

Joint ci ratio: 1.238774e-01	ci left: 1.267624e-03	ci right 1.436318e-03	k: 999	n:740000
Cons ci ratio: 8.620561e-02	ci left: 2.666335e-03	ci right 2.907853e-03	k: 2061	n:740000
KS ci ratio: 2.928763e-02	ci left: 2.329021e-02	ci right 2.398379e-02	k: 17490	n:740000
GC   740000 perm   398 sec   (1858 perm/sec)   p_kst 2.363514e-02   p_cons 2.785135e-03   p_joint 1.350000e-03

Joint ci ratio: 1.232019e-01	ci left: 1.264936e-03	ci right 1.432287e-03	k: 1010	n:750000
Cons ci ratio: 8.552367e-02	ci left: 2.673840e-03	ci right 2.914026e-03	k: 2094	n:750000
KS ci ratio: 2.908531e-02	ci left: 2.330264e-02	ci right 2.399172e-02	k: 17734	n:750000
GC   750000 perm   407 sec   (1843 perm/sec)   p_kst 2.364533e-02   p_cons 2.792000e-03   p_joint 1.346667e-03

Joint ci ratio: 1.102980e-01	ci left: 1.567675e-03	ci right 1.751946e-03	k: 1260	n:760000
Cons ci ratio: 8.499798e-02	ci left: 2.672139e-03	ci right 2.910624e-03	k: 2120	n:760000
KS ci ratio: 2.888795e-02	ci left: 2.331345e-02	ci right 2.399809e-02	k: 17977	n:760000
GC   760000 perm   416 sec   (1829 perm/sec)   p_kst 2.365395e-02   p_cons 2.789474e-03   p_joint 1.657895e-03

Joint ci ratio: 1.101680e-01	ci left: 1.551104e-03	ci right 1.733198e-03	k: 1263	n:770000
Cons ci ratio: 8.422653e-02	ci left: 2.687014e-03	ci right 2.924543e-03	k: 2159	n:770000
KS ci ratio: 2.871150e-02	ci left: 2.329691e-02	ci right 2.397681e-02	k: 18199	n:770000
GC   770000 perm   424 sec   (1815 perm/sec)   p_kst 2.363506e-02   p_cons 2.803896e-03   p_joint 1.640260e-03

Joint ci ratio: 8.946798e-02	ci left: 2.345259e-03	ci right 2.566154e-03	k: 1914	n:780000
Cons ci ratio: 8.378193e-02	ci left: 2.681433e-03	ci right 2.917156e-03	k: 2182	n:780000
KS ci ratio: 2.853032e-02	ci left: 2.329353e-02	ci right 2.396898e-02	k: 18431	n:780000
GC   780000 perm   433 sec   (1801 perm/sec)   p_kst 2.362949e-02   p_cons 2.797436e-03   p_joint 2.453846e-03

Outputting figure to mutsig2_images.part000000000069/GC.8_1473_780000_0.023629_0.0027974_0.0024538.png
                gene_name: GC
               theta_stop: 0.089 
                    nperm: 780000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.0028 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0029 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0026 

Current progress: 12 percent done.
GCLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
Cons ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
KS ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
GCLC   10000 perm   2 sec   (4648 perm/sec)   p_kst 2.636000e-01   p_cons 5.689000e-01   p_joint 4.852000e-01

Outputting figure to mutsig2_images.part000000000069/GCLC.8_1978_10000_0.2636_0.5689_0.4852.png
                gene_name: GCLC
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 14 percent done.
GAS2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.169932e-03	ci left: 9.918346e-01	ci right 9.950678e-01	k: 9936	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
GAS2L2   10000 perm   2 sec   (4815 perm/sec)   p_kst 8.759000e-01   p_cons 9.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GAS2L2.7_2667_10000_0.8759_0.9936_1.png
                gene_name: GAS2L2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
GAS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
Cons ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
KS ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
GAS7   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.002000e-01   p_cons 6.641000e-01   p_joint 4.710000e-01

Outputting figure to mutsig2_images.part000000000069/GAS7.7_1545_10000_0.3002_0.6641_0.471.png
                gene_name: GAS7
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 17 percent done.
GBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
GBF1   10000 perm   3 sec   (3873 perm/sec)   p_kst 8.655000e-01   p_cons 1.402000e-01   p_joint 3.561000e-01

Outputting figure to mutsig2_images.part000000000069/GBF1.7_5736_10000_0.8655_0.1402_0.3561.png
                gene_name: GBF1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 18 percent done.
GCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
GCC1   10000 perm   2 sec   (5006 perm/sec)   p_kst 9.748000e-01   p_cons 1.863000e-01   p_joint 5.946000e-01

Outputting figure to mutsig2_images.part000000000069/GCC1.7_2336_10000_0.9748_0.1863_0.5946.png
                gene_name: GCC1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
GDF6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
Cons ci ratio: 1.958236e-02	ci left: 7.923276e-01	ci right 8.080971e-01	k: 8003	n:10000
KS ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
GDF6   10000 perm   2 sec   (6081 perm/sec)   p_kst 2.981000e-01   p_cons 8.003000e-01   p_joint 5.754000e-01

Outputting figure to mutsig2_images.part000000000069/GDF6.6_1376_10000_0.2981_0.8003_0.5754.png
                gene_name: GDF6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 22 percent done.
GAP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
GAP43   10000 perm   2 sec   (6200 perm/sec)   p_kst 6.088000e-01   p_cons 4.571000e-01   p_joint 6.367000e-01

Outputting figure to mutsig2_images.part000000000069/GAP43.6_871_10000_0.6088_0.4571_0.6367.png
                gene_name: GAP43
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 23 percent done.
GAPDHS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
GAPDHS   10000 perm   2 sec   (5581 perm/sec)   p_kst 6.993000e-01   p_cons 9.192000e-01   p_joint 8.055000e-01

Outputting figure to mutsig2_images.part000000000069/GAPDHS.6_1271_10000_0.6993_0.9192_0.8055.png
                gene_name: GAPDHS
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 25 percent done.
GAS2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
GAS2L3   10000 perm   2 sec   (5298 perm/sec)   p_kst 4.682000e-01   p_cons 1.718000e-01   p_joint 4.215000e-01

Outputting figure to mutsig2_images.part000000000069/GAS2L3.6_2117_10000_0.4682_0.1718_0.4215.png
                gene_name: GAS2L3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 26 percent done.
GATA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
KS ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
GATA3   10000 perm   2 sec   (5537 perm/sec)   p_kst 6.010000e-02   p_cons 2.300000e-03   p_joint 1.250000e-02

Joint ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
Cons ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
KS ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
GATA3   20000 perm   4 sec   (4927 perm/sec)   p_kst 5.840000e-02   p_cons 3.100000e-03   p_joint 1.820000e-02

Joint ci ratio: 2.769537e-01	ci left: 5.715107e-03	ci right 7.582366e-03	k: 198	n:30000
Cons ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
KS ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
GATA3   30000 perm   6 sec   (4700 perm/sec)   p_kst 5.790000e-02   p_cons 3.166667e-03   p_joint 6.600000e-03

Joint ci ratio: 1.462216e-01	ci left: 1.635811e-02	ci right 1.896259e-02	k: 705	n:40000
Cons ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
KS ci ratio: 7.902447e-02	ci left: 5.565540e-02	ci right 6.025903e-02	k: 2317	n:40000
GATA3   40000 perm   9 sec   (4557 perm/sec)   p_kst 5.792500e-02   p_cons 3.175000e-03   p_joint 1.762500e-02

Joint ci ratio: 1.433255e-01	ci left: 1.368265e-02	ci right 1.581423e-02	k: 736	n:50000
Cons ci ratio: 3.103785e-01	ci left: 2.687090e-03	ci right 3.691962e-03	k: 158	n:50000
KS ci ratio: 7.085717e-02	ci left: 5.563256e-02	ci right 5.973898e-02	k: 2883	n:50000
GATA3   50000 perm   11 sec   (4433 perm/sec)   p_kst 5.766000e-02   p_cons 3.160000e-03   p_joint 1.472000e-02

Joint ci ratio: 1.593641e-01	ci left: 9.187279e-03	ci right 1.079398e-02	k: 598	n:60000
Cons ci ratio: 2.809819e-01	ci left: 2.779427e-03	ci right 3.702991e-03	k: 193	n:60000
KS ci ratio: 6.491076e-02	ci left: 5.543703e-02	ci right 5.917260e-02	k: 3437	n:60000
GATA3   60000 perm   14 sec   (4324 perm/sec)   p_kst 5.728333e-02   p_cons 3.216667e-03   p_joint 9.966667e-03

Joint ci ratio: 1.460546e-01	ci left: 9.441334e-03	ci right 1.094254e-02	k: 712	n:70000
Cons ci ratio: 2.609111e-01	ci left: 2.795179e-03	ci right 3.646824e-03	k: 224	n:70000
KS ci ratio: 6.108748e-02	ci left: 5.385747e-02	ci right 5.726521e-02	k: 3888	n:70000
GATA3   70000 perm   17 sec   (4228 perm/sec)   p_kst 5.554286e-02   p_cons 3.200000e-03   p_joint 1.017143e-02

Joint ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
Cons ci ratio: 2.431808e-01	ci left: 2.843974e-03	ci right 3.642723e-03	k: 258	n:80000
KS ci ratio: 5.593029e-02	ci left: 5.622971e-02	ci right 5.947745e-02	k: 4627	n:80000
GATA3   80000 perm   19 sec   (4123 perm/sec)   p_kst 5.783750e-02   p_cons 3.225000e-03   p_joint 1.001250e-02

Joint ci ratio: 1.438018e-01	ci left: 7.599732e-03	ci right 8.787850e-03	k: 736	n:90000
Cons ci ratio: 2.326519e-01	ci left: 2.778742e-03	ci right 3.520521e-03	k: 282	n:90000
KS ci ratio: 5.262174e-02	ci left: 5.654745e-02	ci right 5.961444e-02	k: 5226	n:90000
GATA3   90000 perm   22 sec   (4038 perm/sec)   p_kst 5.806667e-02   p_cons 3.133333e-03   p_joint 8.177778e-03

Joint ci ratio: 1.376039e-01	ci left: 7.495799e-03	ci right 8.613018e-03	k: 804	n:100000
Cons ci ratio: 2.212234e-01	ci left: 2.783823e-03	ci right 3.485487e-03	k: 312	n:100000
KS ci ratio: 4.998895e-02	ci left: 5.648005e-02	ci right 5.938566e-02	k: 5792	n:100000
GATA3   100000 perm   25 sec   (3963 perm/sec)   p_kst 5.792000e-02   p_cons 3.120000e-03   p_joint 8.040000e-03

Joint ci ratio: 1.413266e-01	ci left: 6.454391e-03	ci right 7.444601e-03	k: 763	n:110000
Cons ci ratio: 2.125759e-01	ci left: 2.754271e-03	ci right 3.417812e-03	k: 338	n:110000
KS ci ratio: 4.764793e-02	ci left: 5.658087e-02	ci right 5.935159e-02	k: 6375	n:110000
GATA3   110000 perm   28 sec   (3889 perm/sec)   p_kst 5.795455e-02   p_cons 3.072727e-03   p_joint 6.936364e-03

Joint ci ratio: 1.228254e-01	ci left: 7.899445e-03	ci right 8.941188e-03	k: 1009	n:120000
Cons ci ratio: 2.032006e-01	ci left: 2.777541e-03	ci right 3.413515e-03	k: 370	n:120000
KS ci ratio: 4.555563e-02	ci left: 5.679119e-02	ci right 5.944688e-02	k: 6973	n:120000
GATA3   120000 perm   31 sec   (3820 perm/sec)   p_kst 5.810833e-02   p_cons 3.083333e-03   p_joint 8.408333e-03

Joint ci ratio: 1.210078e-01	ci left: 7.522895e-03	ci right 8.499242e-03	k: 1040	n:130000
Cons ci ratio: 1.949655e-01	ci left: 2.797774e-03	ci right 3.409338e-03	k: 402	n:130000
KS ci ratio: 4.379050e-02	ci left: 5.678869e-02	ci right 5.933876e-02	k: 7547	n:130000
GATA3   130000 perm   35 sec   (3754 perm/sec)   p_kst 5.805385e-02   p_cons 3.092308e-03   p_joint 8.000000e-03

Joint ci ratio: 1.169259e-01	ci left: 7.498383e-03	ci right 8.436453e-03	k: 1114	n:140000
Cons ci ratio: 1.891898e-01	ci left: 2.767915e-03	ci right 3.352968e-03	k: 427	n:140000
KS ci ratio: 4.209219e-02	ci left: 5.710651e-02	ci right 5.956897e-02	k: 8166	n:140000
GATA3   140000 perm   38 sec   (3695 perm/sec)   p_kst 5.832857e-02   p_cons 3.050000e-03   p_joint 7.957143e-03

Joint ci ratio: 1.188512e-01	ci left: 6.771886e-03	ci right 7.633994e-03	k: 1079	n:150000
Cons ci ratio: 1.836955e-01	ci left: 2.748629e-03	ci right 3.310854e-03	k: 453	n:150000
KS ci ratio: 4.064115e-02	ci left: 5.721190e-02	ci right 5.959187e-02	k: 8759	n:150000
GATA3   150000 perm   41 sec   (3628 perm/sec)   p_kst 5.839333e-02   p_cons 3.020000e-03   p_joint 7.193333e-03

Joint ci ratio: 1.195487e-01	ci left: 6.275783e-03	ci right 7.079750e-03	k: 1067	n:160000
Cons ci ratio: 1.768156e-01	ci left: 2.791695e-03	ci right 3.339057e-03	k: 489	n:160000
KS ci ratio: 3.932828e-02	ci left: 5.731159e-02	ci right 5.961694e-02	k: 9353	n:160000
GATA3   160000 perm   45 sec   (3570 perm/sec)   p_kst 5.845625e-02   p_cons 3.056250e-03   p_joint 6.668750e-03

Joint ci ratio: 1.081787e-01	ci left: 7.249881e-03	ci right 8.084688e-03	k: 1302	n:170000
Cons ci ratio: 1.724735e-01	ci left: 2.768106e-03	ci right 3.296127e-03	k: 514	n:170000
KS ci ratio: 3.813902e-02	ci left: 5.738899e-02	ci right 5.962610e-02	k: 9945	n:170000
GATA3   170000 perm   48 sec   (3515 perm/sec)   p_kst 5.850000e-02   p_cons 3.023529e-03   p_joint 7.658824e-03

Joint ci ratio: 1.144753e-01	ci left: 6.101564e-03	ci right 6.847798e-03	k: 1164	n:180000
Cons ci ratio: 1.676595e-01	ci left: 2.773896e-03	ci right 3.286761e-03	k: 544	n:180000
KS ci ratio: 3.695661e-02	ci left: 5.773958e-02	ci right 5.991910e-02	k: 10588	n:180000
GATA3   180000 perm   52 sec   (3463 perm/sec)   p_kst 5.882222e-02   p_cons 3.022222e-03   p_joint 6.466667e-03

Joint ci ratio: 1.236343e-01	ci left: 4.937644e-03	ci right 5.593380e-03	k: 999	n:190000
Cons ci ratio: 1.633699e-01	ci left: 2.774211e-03	ci right 3.272722e-03	k: 573	n:190000
KS ci ratio: 3.592191e-02	ci left: 5.791853e-02	ci right 6.004232e-02	k: 11205	n:190000
GATA3   190000 perm   56 sec   (3413 perm/sec)   p_kst 5.897368e-02   p_cons 3.015789e-03   p_joint 5.257895e-03

Joint ci ratio: 1.203678e-01	ci left: 4.957373e-03	ci right 5.597095e-03	k: 1054	n:200000
Cons ci ratio: 1.596593e-01	ci left: 2.765043e-03	ci right 3.249539e-03	k: 600	n:200000
KS ci ratio: 3.498681e-02	ci left: 5.802579e-02	ci right 6.009701e-02	k: 11811	n:200000
GATA3   200000 perm   59 sec   (3364 perm/sec)   p_kst 5.905500e-02   p_cons 3.000000e-03   p_joint 5.270000e-03

Joint ci ratio: 1.333966e-01	ci left: 3.821977e-03	ci right 4.372803e-03	k: 859	n:210000
Cons ci ratio: 1.560660e-01	ci left: 2.761441e-03	ci right 3.233396e-03	k: 628	n:210000
KS ci ratio: 3.419435e-02	ci left: 5.788730e-02	ci right 5.990585e-02	k: 12367	n:210000
GATA3   210000 perm   63 sec   (3317 perm/sec)   p_kst 5.889048e-02   p_cons 2.990476e-03   p_joint 4.090476e-03

Joint ci ratio: 1.330987e-01	ci left: 3.665806e-03	ci right 4.192851e-03	k: 863	n:220000
Cons ci ratio: 1.523564e-01	ci left: 2.771394e-03	ci right 3.232764e-03	k: 659	n:220000
KS ci ratio: 3.338621e-02	ci left: 5.798287e-02	ci right 5.995604e-02	k: 12972	n:220000
GATA3   220000 perm   67 sec   (3267 perm/sec)   p_kst 5.896364e-02   p_cons 2.995455e-03   p_joint 3.922727e-03

Joint ci ratio: 1.076662e-01	ci left: 5.421789e-03	ci right 6.042940e-03	k: 1317	n:230000
Cons ci ratio: 1.495520e-01	ci left: 2.755487e-03	ci right 3.205010e-03	k: 684	n:230000
KS ci ratio: 3.263406e-02	ci left: 5.806632e-02	ci right 5.999698e-02	k: 13576	n:230000
GATA3   230000 perm   71 sec   (3221 perm/sec)   p_kst 5.902609e-02   p_cons 2.973913e-03   p_joint 5.726087e-03

Joint ci ratio: 1.067066e-01	ci left: 5.293182e-03	ci right 5.893853e-03	k: 1341	n:240000
Cons ci ratio: 1.468969e-01	ci left: 2.740976e-03	ci right 3.179497e-03	k: 709	n:240000
KS ci ratio: 3.197011e-02	ci left: 5.800681e-02	ci right 5.989553e-02	k: 14147	n:240000
GATA3   240000 perm   76 sec   (3178 perm/sec)   p_kst 5.894583e-02   p_cons 2.954167e-03   p_joint 5.587500e-03

Joint ci ratio: 9.258137e-02	ci left: 6.790232e-03	ci right 7.453272e-03	k: 1779	n:250000
Cons ci ratio: 1.437909e-01	ci left: 2.750829e-03	ci right 3.180822e-03	k: 740	n:250000
KS ci ratio: 3.131346e-02	ci left: 5.806360e-02	ci right 5.991464e-02	k: 14746	n:250000
GATA3   250000 perm   80 sec   (3137 perm/sec)   p_kst 5.898400e-02   p_cons 2.960000e-03   p_joint 7.116000e-03

Joint ci ratio: 9.184380e-02	ci left: 6.638011e-03	ci right 7.280746e-03	k: 1808	n:260000
Cons ci ratio: 1.410574e-01	ci left: 2.752592e-03	ci right 3.173993e-03	k: 769	n:260000
KS ci ratio: 3.072228e-02	ci left: 5.802093e-02	ci right 5.983507e-02	k: 15320	n:260000
GATA3   260000 perm   84 sec   (3094 perm/sec)   p_kst 5.892308e-02   p_cons 2.957692e-03   p_joint 6.953846e-03

Joint ci ratio: 8.514667e-02	ci left: 7.457110e-03	ci right 8.123891e-03	k: 2102	n:270000
Cons ci ratio: 1.382140e-01	ci left: 2.765024e-03	ci right 3.179093e-03	k: 801	n:270000
KS ci ratio: 3.016639e-02	ci left: 5.797070e-02	ci right 5.974990e-02	k: 15891	n:270000
GATA3   270000 perm   88 sec   (3055 perm/sec)   p_kst 5.885556e-02   p_cons 2.966667e-03   p_joint 7.785185e-03

Joint ci ratio: 8.394057e-02	ci left: 7.404027e-03	ci right 8.056224e-03	k: 2163	n:280000
Cons ci ratio: 1.356992e-01	ci left: 2.769745e-03	ci right 3.176365e-03	k: 831	n:280000
KS ci ratio: 2.962624e-02	ci left: 5.797398e-02	ci right 5.972088e-02	k: 16476	n:280000
GATA3   280000 perm   93 sec   (3017 perm/sec)   p_kst 5.884286e-02   p_cons 2.967857e-03   p_joint 7.725000e-03

Joint ci ratio: 8.514934e-02	ci left: 6.946124e-03	ci right 7.567233e-03	k: 2103	n:290000
Cons ci ratio: 1.338632e-01	ci left: 2.750871e-03	ci right 3.148820e-03	k: 854	n:290000
KS ci ratio: 2.910052e-02	ci left: 5.802867e-02	ci right 5.974567e-02	k: 17076	n:290000
GATA3   290000 perm   97 sec   (2980 perm/sec)   p_kst 5.888276e-02   p_cons 2.944828e-03   p_joint 7.251724e-03

Joint ci ratio: 8.607074e-02	ci left: 6.571005e-03	ci right 7.165248e-03	k: 2059	n:300000
Cons ci ratio: 1.316493e-01	ci left: 2.752631e-03	ci right 3.143735e-03	k: 883	n:300000
KS ci ratio: 2.859666e-02	ci left: 5.809984e-02	ci right 5.978869e-02	k: 17682	n:300000
GATA3   300000 perm   102 sec   (2945 perm/sec)   p_kst 5.894000e-02   p_cons 2.943333e-03   p_joint 6.863333e-03

Joint ci ratio: 8.654680e-02	ci left: 6.289562e-03	ci right 6.861657e-03	k: 2037	n:310000
Cons ci ratio: 1.289060e-01	ci left: 2.782425e-03	ci right 3.168894e-03	k: 921	n:310000
KS ci ratio: 2.808792e-02	ci left: 5.828523e-02	ci right 5.994884e-02	k: 18325	n:310000
GATA3   310000 perm   107 sec   (2908 perm/sec)   p_kst 5.911290e-02   p_cons 2.970968e-03   p_joint 6.570968e-03

Joint ci ratio: 8.615250e-02	ci left: 6.151087e-03	ci right 6.707908e-03	k: 2056	n:320000
Cons ci ratio: 1.259987e-01	ci left: 2.825570e-03	ci right 3.208518e-03	k: 964	n:320000
KS ci ratio: 2.768304e-02	ci left: 5.814879e-02	ci right 5.978420e-02	k: 18868	n:320000
GATA3   320000 perm   111 sec   (2871 perm/sec)   p_kst 5.896250e-02   p_cons 3.012500e-03   p_joint 6.425000e-03

Joint ci ratio: 7.720499e-02	ci left: 7.452134e-03	ci right 8.053528e-03	k: 2557	n:330000
Cons ci ratio: 1.242727e-01	ci left: 2.819203e-03	ci right 3.195669e-03	k: 991	n:330000
KS ci ratio: 2.724301e-02	ci left: 5.823156e-02	ci right 5.984286e-02	k: 19481	n:330000
GATA3   330000 perm   116 sec   (2836 perm/sec)   p_kst 5.903333e-02   p_cons 3.003030e-03   p_joint 7.748485e-03

Joint ci ratio: 7.844371e-02	ci left: 7.005059e-03	ci right 7.579857e-03	k: 2478	n:340000
Cons ci ratio: 1.222554e-01	ci left: 2.830352e-03	ci right 3.201728e-03	k: 1024	n:340000
KS ci ratio: 2.682474e-02	ci left: 5.830381e-02	ci right 5.989195e-02	k: 20092	n:340000
GATA3   340000 perm   121 sec   (2802 perm/sec)   p_kst 5.909412e-02   p_cons 3.011765e-03   p_joint 7.288235e-03

Joint ci ratio: 7.797814e-02	ci left: 6.888936e-03	ci right 7.450698e-03	k: 2508	n:350000
Cons ci ratio: 1.208498e-01	ci left: 2.815970e-03	ci right 3.180907e-03	k: 1048	n:350000
KS ci ratio: 2.643805e-02	ci left: 5.831815e-02	ci right 5.988344e-02	k: 20684	n:350000
GATA3   350000 perm   126 sec   (2770 perm/sec)   p_kst 5.909714e-02   p_cons 2.994286e-03   p_joint 7.165714e-03

Joint ci ratio: 7.724533e-02	ci left: 6.828314e-03	ci right 7.379665e-03	k: 2556	n:360000
Cons ci ratio: 1.193244e-01	ci left: 2.810495e-03	ci right 3.169801e-03	k: 1075	n:360000
KS ci ratio: 2.608783e-02	ci left: 5.824627e-02	ci right 5.978861e-02	k: 21245	n:360000
GATA3   360000 perm   132 sec   (2736 perm/sec)   p_kst 5.901389e-02   p_cons 2.986111e-03   p_joint 7.100000e-03

Joint ci ratio: 7.681539e-02	ci left: 6.720619e-03	ci right 7.260118e-03	k: 2585	n:370000
Cons ci ratio: 1.176950e-01	ci left: 2.813214e-03	ci right 3.167614e-03	k: 1105	n:370000
KS ci ratio: 2.573110e-02	ci left: 5.826437e-02	ci right 5.978578e-02	k: 21838	n:370000
GATA3   370000 perm   137 sec   (2703 perm/sec)   p_kst 5.902162e-02   p_cons 2.986486e-03   p_joint 6.986486e-03

Joint ci ratio: 8.237731e-02	ci left: 5.679580e-03	ci right 6.170106e-03	k: 2250	n:380000
Cons ci ratio: 1.160792e-01	ci left: 2.818376e-03	ci right 3.168218e-03	k: 1136	n:380000
KS ci ratio: 2.556593e-02	ci left: 5.751783e-02	ci right 5.900996e-02	k: 22139	n:380000
GATA3   380000 perm   142 sec   (2673 perm/sec)   p_kst 5.826053e-02   p_cons 2.989474e-03   p_joint 5.921053e-03

Joint ci ratio: 8.201793e-02	ci left: 5.584166e-03	ci right 6.064246e-03	k: 2270	n:390000
Cons ci ratio: 1.141369e-01	ci left: 2.843233e-03	ci right 3.189858e-03	k: 1175	n:390000
KS ci ratio: 2.521461e-02	ci left: 5.762016e-02	ci right 5.909410e-02	k: 22758	n:390000
GATA3   390000 perm   148 sec   (2644 perm/sec)   p_kst 5.835385e-02   p_cons 3.012821e-03   p_joint 5.820513e-03

Joint ci ratio: 7.336087e-02	ci left: 6.827403e-03	ci right 7.349776e-03	k: 2834	n:400000
Cons ci ratio: 1.124748e-01	ci left: 2.857173e-03	ci right 3.200089e-03	k: 1210	n:400000
KS ci ratio: 2.486835e-02	ci left: 5.775726e-02	ci right 5.921414e-02	k: 23393	n:400000
GATA3   400000 perm   153 sec   (2613 perm/sec)   p_kst 5.848250e-02   p_cons 3.025000e-03   p_joint 7.085000e-03

Joint ci ratio: 7.341943e-02	ci left: 6.651282e-03	ci right 7.160602e-03	k: 2830	n:410000
Cons ci ratio: 1.112870e-01	ci left: 2.849125e-03	ci right 3.187227e-03	k: 1236	n:410000
KS ci ratio: 2.457782e-02	ci left: 5.770109e-02	ci right 5.913930e-02	k: 23951	n:410000
GATA3   410000 perm   159 sec   (2584 perm/sec)   p_kst 5.841707e-02   p_cons 3.014634e-03   p_joint 6.902439e-03

Joint ci ratio: 7.290873e-02	ci left: 6.586406e-03	ci right 7.087101e-03	k: 2870	n:420000
Cons ci ratio: 1.101799e-01	ci left: 2.839163e-03	ci right 3.172513e-03	k: 1261	n:420000
KS ci ratio: 2.426205e-02	ci left: 5.780630e-02	ci right 5.922837e-02	k: 24576	n:420000
GATA3   420000 perm   164 sec   (2556 perm/sec)   p_kst 5.851429e-02   p_cons 3.002381e-03   p_joint 6.833333e-03

Joint ci ratio: 7.028811e-02	ci left: 6.928894e-03	ci right 7.435921e-03	k: 3087	n:430000
Cons ci ratio: 1.088510e-01	ci left: 2.843255e-03	ci right 3.172801e-03	k: 1292	n:430000
KS ci ratio: 2.397583e-02	ci left: 5.782579e-02	ci right 5.923133e-02	k: 25166	n:430000
GATA3   430000 perm   170 sec   (2529 perm/sec)   p_kst 5.852558e-02   p_cons 3.004651e-03   p_joint 7.179070e-03

Joint ci ratio: 6.998642e-02	ci left: 6.831694e-03	ci right 7.329375e-03	k: 3114	n:440000
Cons ci ratio: 1.078143e-01	ci left: 2.833913e-03	ci right 3.159050e-03	k: 1317	n:440000
KS ci ratio: 2.371809e-02	ci left: 5.775861e-02	ci right 5.914721e-02	k: 25718	n:440000
GATA3   440000 perm   176 sec   (2503 perm/sec)   p_kst 5.845000e-02   p_cons 2.993182e-03   p_joint 7.077273e-03

Joint ci ratio: 6.989037e-02	ci left: 6.699513e-03	ci right 7.186868e-03	k: 3123	n:450000
Cons ci ratio: 1.065682e-01	ci left: 2.837980e-03	ci right 3.159583e-03	k: 1348	n:450000
KS ci ratio: 2.343346e-02	ci left: 5.785803e-02	ci right 5.923211e-02	k: 26344	n:450000
GATA3   450000 perm   182 sec   (2477 perm/sec)   p_kst 5.854222e-02   p_cons 2.995556e-03   p_joint 6.940000e-03

Joint ci ratio: 6.878488e-02	ci left: 6.769638e-03	ci right 7.253994e-03	k: 3224	n:460000
Cons ci ratio: 1.055178e-01	ci left: 2.833423e-03	ci right 3.151149e-03	k: 1375	n:460000
KS ci ratio: 2.289400e-02	ci left: 5.922890e-02	ci right 6.060273e-02	k: 27560	n:460000
GATA3   460000 perm   188 sec   (2452 perm/sec)   p_kst 5.991304e-02   p_cons 2.989130e-03   p_joint 7.008696e-03

Joint ci ratio: 6.809196e-02	ci left: 6.763625e-03	ci right 7.242483e-03	k: 3290	n:470000
Cons ci ratio: 1.044979e-01	ci left: 2.829075e-03	ci right 3.143059e-03	k: 1402	n:470000
KS ci ratio: 2.265134e-02	ci left: 5.922535e-02	ci right 6.058434e-02	k: 28154	n:470000
GATA3   470000 perm   194 sec   (2426 perm/sec)   p_kst 5.990213e-02   p_cons 2.982979e-03   p_joint 7.000000e-03

Joint ci ratio: 6.793089e-02	ci left: 6.655470e-03	ci right 7.125512e-03	k: 3306	n:480000
Cons ci ratio: 1.030025e-01	ci left: 2.853338e-03	ci right 3.165209e-03	k: 1443	n:480000
KS ci ratio: 2.241044e-02	ci left: 5.925102e-02	ci right 6.059596e-02	k: 28762	n:480000
GATA3   480000 perm   200 sec   (2401 perm/sec)   p_kst 5.992083e-02   p_cons 3.006250e-03   p_joint 6.887500e-03

Joint ci ratio: 6.879975e-02	ci left: 6.355124e-03	ci right 6.809923e-03	k: 3224	n:490000
Cons ci ratio: 1.018796e-01	ci left: 2.858740e-03	ci right 3.167591e-03	k: 1475	n:490000
KS ci ratio: 2.217907e-02	ci left: 5.926557e-02	ci right 6.059678e-02	k: 29365	n:490000
GATA3   490000 perm   206 sec   (2377 perm/sec)   p_kst 5.992857e-02   p_cons 3.010204e-03   p_joint 6.579592e-03

Joint ci ratio: 6.814807e-02	ci left: 6.349898e-03	ci right 6.799848e-03	k: 3286	n:500000
Cons ci ratio: 1.011296e-01	ci left: 2.844447e-03	ci right 3.149357e-03	k: 1497	n:500000
KS ci ratio: 2.196641e-02	ci left: 5.921992e-02	ci right 6.053718e-02	k: 29938	n:500000
GATA3   500000 perm   213 sec   (2352 perm/sec)   p_kst 5.987600e-02   p_cons 2.994000e-03   p_joint 6.572000e-03

Joint ci ratio: 6.534032e-02	ci left: 6.778794e-03	ci right 7.238598e-03	k: 3573	n:510000
Cons ci ratio: 9.996797e-02	ci left: 2.855576e-03	ci right 3.157957e-03	k: 1532	n:510000
KS ci ratio: 2.175370e-02	ci left: 5.920733e-02	ci right 6.051140e-02	k: 30527	n:510000
GATA3   510000 perm   219 sec   (2329 perm/sec)   p_kst 5.985686e-02   p_cons 3.003922e-03   p_joint 7.005882e-03

Outputting figure to mutsig2_images.part000000000069/GATA3.6_1355_510000_0.059857_0.0030039_0.0070059.png
                gene_name: GATA3
               theta_stop: 0.100 
                    nperm: 510000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.0030 
      ci_cons_bounds_left: 0.0029 
     ci_cons_bounds_right: 0.0032 
                  p_joint: 0.0070 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0072 

Current progress: 28 percent done.
GBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
GBP6   10000 perm   2 sec   (5503 perm/sec)   p_kst 3.278000e-01   p_cons 7.704000e-01   p_joint 5.336000e-01

Outputting figure to mutsig2_images.part000000000069/GBP6.6_1942_10000_0.3278_0.7704_0.5336.png
                gene_name: GBP6
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 29 percent done.
GCKR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
GCKR   10000 perm   2 sec   (5261 perm/sec)   p_kst 4.238000e-01   p_cons 6.045000e-01   p_joint 5.707000e-01

Outputting figure to mutsig2_images.part000000000069/GCKR.6_1954_10000_0.4238_0.6045_0.5707.png
                gene_name: GCKR
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 31 percent done.
GDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
GDA   10000 perm   2 sec   (5215 perm/sec)   p_kst 8.191000e-01   p_cons 9.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GDA.6_1421_10000_0.8191_0.957_1.png
                gene_name: GDA
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
GDF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
Cons ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
GDF10   10000 perm   2 sec   (5545 perm/sec)   p_kst 2.108000e-01   p_cons 8.550000e-01   p_joint 4.023000e-01

Outputting figure to mutsig2_images.part000000000069/GDF10.6_1449_10000_0.2108_0.855_0.4023.png
                gene_name: GDF10
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 34 percent done.
GDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
GDF2   10000 perm   2 sec   (5224 perm/sec)   p_kst 3.147000e-01   p_cons 3.565000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000069/GDF2.6_1298_10000_0.3147_0.3565_0.4451.png
                gene_name: GDF2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 35 percent done.
GAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
Cons ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
KS ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
GAN   10000 perm   2 sec   (5121 perm/sec)   p_kst 6.141000e-01   p_cons 1.358000e-01   p_joint 4.077000e-01

Outputting figure to mutsig2_images.part000000000069/GAN.5_1838_10000_0.6141_0.1358_0.4077.png
                gene_name: GAN
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 37 percent done.
GCM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
Cons ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
KS ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
GCM1   10000 perm   2 sec   (5933 perm/sec)   p_kst 7.811000e-01   p_cons 9.249000e-01   p_joint 8.598000e-01

Outputting figure to mutsig2_images.part000000000069/GCM1.5_1331_10000_0.7811_0.9249_0.8598.png
                gene_name: GCM1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 38 percent done.
GAPVD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
Cons ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
GAPVD1   10000 perm   2 sec   (4389 perm/sec)   p_kst 2.556000e-01   p_cons 3.619000e-01   p_joint 3.077000e-01

Outputting figure to mutsig2_images.part000000000069/GAPVD1.4_4568_10000_0.2556_0.3619_0.3077.png
                gene_name: GAPVD1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 40 percent done.
GAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
KS ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
GAR1   10000 perm   2 sec   (6085 perm/sec)   p_kst 4.682000e-01   p_cons 9.599000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000069/GAR1.4_678_10000_0.4682_0.9599_0.5378.png
                gene_name: GAR1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 42 percent done.
GARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
Cons ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
GARS   10000 perm   2 sec   (5267 perm/sec)   p_kst 3.090000e-02   p_cons 6.590000e-01   p_joint 6.260000e-02

Joint ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
Cons ci ratio: 1.993166e-02	ci left: 6.525331e-01	ci right 6.657206e-01	k: 13183	n:20000
KS ci ratio: 1.545824e-01	ci left: 2.873760e-02	ci right 3.359997e-02	k: 622	n:20000
GARS   20000 perm   4 sec   (4762 perm/sec)   p_kst 3.110000e-02   p_cons 6.591500e-01   p_joint 6.175000e-02

Joint ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
Cons ci ratio: 1.624357e-02	ci left: 6.546076e-01	ci right 6.653614e-01	k: 19800	n:30000
KS ci ratio: 1.273109e-01	ci left: 2.867995e-02	ci right 3.261164e-02	k: 918	n:30000
GARS   30000 perm   7 sec   (4558 perm/sec)   p_kst 3.060000e-02   p_cons 6.600000e-01   p_joint 5.580000e-02

Joint ci ratio: 7.394160e-02	ci left: 6.321741e-02	ci right 6.809588e-02	k: 2625	n:40000
Cons ci ratio: 1.408390e-02	ci left: 6.548071e-01	ci right 6.641198e-01	k: 26379	n:40000
KS ci ratio: 1.110205e-01	ci left: 2.854456e-02	ci right 3.192409e-02	k: 1208	n:40000
GARS   40000 perm   9 sec   (4404 perm/sec)   p_kst 3.020000e-02   p_cons 6.594750e-01   p_joint 6.562500e-02

Joint ci ratio: 6.935131e-02	ci left: 5.797331e-02	ci right 6.215795e-02	k: 3002	n:50000
Cons ci ratio: 1.255433e-02	ci left: 6.568316e-01	ci right 6.651497e-01	k: 33050	n:50000
KS ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
GARS   50000 perm   12 sec   (4291 perm/sec)   p_kst 2.996000e-02   p_cons 6.610000e-01   p_joint 6.004000e-02

Outputting figure to mutsig2_images.part000000000069/GARS.4_2288_50000_0.02996_0.661_0.06004.png
                gene_name: GARS
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 43 percent done.
GART
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
KS ci ratio: 3.123541e-02	ci left: 6.019660e-01	ci right 6.211689e-01	k: 6116	n:10000
GART   10000 perm   2 sec   (5069 perm/sec)   p_kst 6.116000e-01   p_cons 7.340000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000069/GART.4_3121_10000_0.6116_0.734_0.6701.png
                gene_name: GART
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 45 percent done.
GATA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
Cons ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
KS ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
GATA4   10000 perm   2 sec   (6071 perm/sec)   p_kst 6.750000e-02   p_cons 1.983000e-01   p_joint 2.127000e-01

Joint ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
Cons ci ratio: 5.842020e-02	ci left: 1.783545e-01	ci right 1.891376e-01	k: 3674	n:20000
KS ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
GATA4   20000 perm   4 sec   (5453 perm/sec)   p_kst 6.670000e-02   p_cons 1.837000e-01   p_joint 4.375000e-02

Joint ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
Cons ci ratio: 4.631325e-02	ci left: 1.882831e-01	ci right 1.972432e-01	k: 5782	n:30000
KS ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
GATA4   30000 perm   6 sec   (5179 perm/sec)   p_kst 6.263333e-02   p_cons 1.927333e-01   p_joint 6.160000e-02

Outputting figure to mutsig2_images.part000000000069/GATA4.4_1353_30000_0.062633_0.19273_0.0616.png
                gene_name: GATA4
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 46 percent done.
GATM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
Cons ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
KS ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
GATM   10000 perm   2 sec   (5962 perm/sec)   p_kst 3.317000e-01   p_cons 1.600000e-01   p_joint 2.919000e-01

Outputting figure to mutsig2_images.part000000000069/GATM.4_1308_10000_0.3317_0.16_0.2919.png
                gene_name: GATM
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 48 percent done.
GCAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
KS ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
GCAT   10000 perm   2 sec   (5925 perm/sec)   p_kst 7.150000e-02   p_cons 2.368000e-01   p_joint 7.840000e-02

Joint ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
Cons ci ratio: 4.980994e-02	ci left: 2.305253e-01	ci right 2.423514e-01	k: 4728	n:20000
KS ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
GCAT   20000 perm   4 sec   (5233 perm/sec)   p_kst 6.985000e-02   p_cons 2.364000e-01   p_joint 8.365000e-02

Joint ci ratio: 7.544047e-02	ci left: 7.944335e-02	ci right 8.570443e-02	k: 2476	n:30000
Cons ci ratio: 3.942758e-02	ci left: 2.429225e-01	ci right 2.527264e-01	k: 7434	n:30000
KS ci ratio: 8.306762e-02	ci left: 6.622250e-02	ci right 7.199462e-02	k: 2072	n:30000
GCAT   30000 perm   6 sec   (4962 perm/sec)   p_kst 6.906667e-02   p_cons 2.478000e-01   p_joint 8.253333e-02

Outputting figure to mutsig2_images.part000000000069/GCAT.4_1374_30000_0.069067_0.2478_0.082533.png
                gene_name: GCAT
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.086 

Current progress: 49 percent done.
GCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
GCG   10000 perm   1 sec   (6955 perm/sec)   p_kst 2.629000e-01   p_cons 2.229000e-01   p_joint 2.981000e-01

Outputting figure to mutsig2_images.part000000000069/GCG.4_563_10000_0.2629_0.2229_0.2981.png
                gene_name: GCG
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 51 percent done.
GCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
GCH1   10000 perm   2 sec   (6052 perm/sec)   p_kst 2.230000e-02   p_cons 3.061000e-01   p_joint 4.790000e-02

Joint ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
Cons ci ratio: 4.092738e-02	ci left: 3.079679e-01	ci right 3.208861e-01	k: 6288	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
GCH1   20000 perm   4 sec   (5356 perm/sec)   p_kst 2.270000e-02   p_cons 3.144000e-01   p_joint 1.855000e-02

Joint ci ratio: 1.499689e-01	ci left: 2.059463e-02	ci right 2.396544e-02	k: 667	n:30000
Cons ci ratio: 3.412630e-02	ci left: 3.002237e-01	ci right 3.106806e-01	k: 9163	n:30000
KS ci ratio: 1.483862e-01	ci left: 2.104423e-02	ci right 2.444906e-02	k: 681	n:30000
GCH1   30000 perm   6 sec   (5095 perm/sec)   p_kst 2.270000e-02   p_cons 3.054333e-01   p_joint 2.223333e-02

Joint ci ratio: 1.326984e-01	ci left: 1.993160e-02	ci right 2.278848e-02	k: 853	n:40000
Cons ci ratio: 2.952932e-02	ci left: 3.012865e-01	ci right 3.103417e-01	k: 12232	n:40000
KS ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
GCH1   40000 perm   8 sec   (4911 perm/sec)   p_kst 2.297500e-02   p_cons 3.058000e-01   p_joint 2.132500e-02

Joint ci ratio: 9.416197e-02	ci left: 3.192039e-02	ci right 3.509407e-02	k: 1674	n:50000
Cons ci ratio: 2.641214e-02	ci left: 3.017628e-01	ci right 3.098597e-01	k: 15290	n:50000
KS ci ratio: 1.138014e-01	ci left: 2.185935e-02	ci right 2.451641e-02	k: 1158	n:50000
GCH1   50000 perm   10 sec   (4789 perm/sec)   p_kst 2.316000e-02   p_cons 3.058000e-01   p_joint 3.348000e-02

Joint ci ratio: 1.070323e-01	ci left: 2.069507e-02	ci right 2.305150e-02	k: 1311	n:60000
Cons ci ratio: 2.414139e-02	ci left: 3.015830e-01	ci right 3.089692e-01	k: 18316	n:60000
KS ci ratio: 1.046904e-01	ci left: 2.163668e-02	ci right 2.404311e-02	k: 1369	n:60000
GCH1   60000 perm   13 sec   (4674 perm/sec)   p_kst 2.281667e-02   p_cons 3.052667e-01   p_joint 2.185000e-02

Joint ci ratio: 9.083706e-02	ci left: 2.473588e-02	ci right 2.710364e-02	k: 1813	n:70000
Cons ci ratio: 2.240024e-02	ci left: 3.009210e-01	ci right 3.077523e-01	k: 21303	n:70000
KS ci ratio: 9.690386e-02	ci left: 2.173481e-02	ci right 2.396213e-02	k: 1598	n:70000
GCH1   70000 perm   15 sec   (4570 perm/sec)   p_kst 2.282857e-02   p_cons 3.043286e-01   p_joint 2.590000e-02

Outputting figure to mutsig2_images.part000000000069/GCH1.4_877_70000_0.022829_0.30433_0.0259.png
                gene_name: GCH1
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 52 percent done.
GCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
KS ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
GCK   10000 perm   2 sec   (5796 perm/sec)   p_kst 8.675000e-01   p_cons 8.021000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCK.4_1536_10000_0.8675_0.8021_1.png
                gene_name: GCK
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
GCNT1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
GCNT1   10000 perm   1 sec   (6895 perm/sec)   p_kst 4.280000e-01   p_cons 7.600000e-02   p_joint 4.979000e-01

Joint ci ratio: 3.445588e-02	ci left: 3.860725e-01	ci right 3.996587e-01	k: 7857	n:20000
Cons ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
KS ci ratio: 3.218553e-02	ci left: 4.189334e-01	ci right 4.326882e-01	k: 8516	n:20000
GCNT1   20000 perm   3 sec   (5932 perm/sec)   p_kst 4.258000e-01   p_cons 7.400000e-02   p_joint 3.928500e-01

Outputting figure to mutsig2_images.part000000000069/GCNT1.3_1291_20000_0.4258_0.074_0.39285.png
                gene_name: GCNT1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
GDF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
GDF5   10000 perm   2 sec   (5644 perm/sec)   p_kst 3.700000e-02   p_cons 9.300000e-02   p_joint 3.790000e-02

Joint ci ratio: 2.126892e-01	ci left: 1.492218e-02	ci right 1.852030e-02	k: 333	n:20000
Cons ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
KS ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
GDF5   20000 perm   4 sec   (4951 perm/sec)   p_kst 3.585000e-02   p_cons 9.455000e-02   p_joint 1.665000e-02

Joint ci ratio: 1.479429e-01	ci left: 2.117272e-02	ci right 2.458721e-02	k: 685	n:30000
Cons ci ratio: 6.965019e-02	ci left: 9.216402e-02	ci right 9.884788e-02	k: 2864	n:30000
KS ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
GDF5   30000 perm   6 sec   (4719 perm/sec)   p_kst 3.573333e-02   p_cons 9.546667e-02   p_joint 2.283333e-02

Joint ci ratio: 1.523797e-01	ci left: 1.503367e-02	ci right 1.753727e-02	k: 650	n:40000
Cons ci ratio: 6.069746e-02	ci left: 9.155170e-02	ci right 9.730733e-02	k: 3776	n:40000
KS ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
GDF5   40000 perm   9 sec   (4571 perm/sec)   p_kst 3.617500e-02   p_cons 9.440000e-02   p_joint 1.625000e-02

Joint ci ratio: 1.541995e-01	ci left: 1.177534e-02	ci right 1.376182e-02	k: 637	n:50000
Cons ci ratio: 5.455956e-02	ci left: 9.102108e-02	ci right 9.614622e-02	k: 4678	n:50000
KS ci ratio: 8.951077e-02	ci left: 3.528411e-02	ci right 3.860993e-02	k: 1846	n:50000
GDF5   50000 perm   11 sec   (4461 perm/sec)   p_kst 3.692000e-02   p_cons 9.356000e-02   p_joint 1.274000e-02

Joint ci ratio: 1.107576e-01	ci left: 1.931621e-02	ci right 2.159718e-02	k: 1226	n:60000
Cons ci ratio: 4.990795e-02	ci left: 9.090172e-02	ci right 9.557105e-02	k: 5593	n:60000
KS ci ratio: 8.204690e-02	ci left: 3.514428e-02	ci right 3.816741e-02	k: 2198	n:60000
GDF5   60000 perm   14 sec   (4362 perm/sec)   p_kst 3.663333e-02   p_cons 9.321667e-02   p_joint 2.043333e-02

Joint ci ratio: 7.944151e-02	ci left: 3.227732e-02	ci right 3.496152e-02	k: 2352	n:70000
Cons ci ratio: 4.619932e-02	ci left: 9.109857e-02	ci right 9.542093e-02	k: 6527	n:70000
KS ci ratio: 7.604541e-02	ci left: 3.517897e-02	ci right 3.797390e-02	k: 2559	n:70000
GDF5   70000 perm   16 sec   (4272 perm/sec)   p_kst 3.655714e-02   p_cons 9.324286e-02   p_joint 3.360000e-02

Outputting figure to mutsig2_images.part000000000069/GDF5.4_1514_70000_0.036557_0.093243_0.0336.png
                gene_name: GDF5
               theta_stop: 0.079 
                    nperm: 70000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 57 percent done.
GANAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
Cons ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
KS ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
GANAB   10000 perm   2 sec   (5155 perm/sec)   p_kst 1.500000e-01   p_cons 1.823000e-01   p_joint 1.199000e-01

Joint ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
Cons ci ratio: 5.682515e-02	ci left: 1.867097e-01	ci right 1.976799e-01	k: 3843	n:20000
KS ci ratio: 6.620319e-02	ci left: 1.441899e-01	ci right 1.541124e-01	k: 2982	n:20000
GANAB   20000 perm   4 sec   (4592 perm/sec)   p_kst 1.491000e-01   p_cons 1.921500e-01   p_joint 8.270000e-02

Outputting figure to mutsig2_images.part000000000069/GANAB.3_3001_20000_0.1491_0.19215_0.0827.png
                gene_name: GANAB
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 58 percent done.
GAPDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
Cons ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
KS ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
GAPDH   10000 perm   2 sec   (6559 perm/sec)   p_kst 3.828000e-01   p_cons 9.600000e-02   p_joint 4.578000e-01

Joint ci ratio: 2.989721e-02	ci left: 4.552712e-01	ci right 4.691398e-01	k: 9244	n:20000
Cons ci ratio: 8.483743e-02	ci left: 9.234354e-02	ci right 1.005742e-01	k: 1928	n:20000
KS ci ratio: 3.502590e-02	ci left: 3.782982e-01	ci right 3.918352e-01	k: 7701	n:20000
GAPDH   20000 perm   3 sec   (5715 perm/sec)   p_kst 3.850500e-01   p_cons 9.640000e-02   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000069/GAPDH.3_1040_20000_0.38505_0.0964_0.4622.png
                gene_name: GAPDH
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 60 percent done.
GATA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
Cons ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
KS ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
GATA5   10000 perm   2 sec   (6223 perm/sec)   p_kst 5.390000e-01   p_cons 6.337000e-01   p_joint 9.850000e-01

Outputting figure to mutsig2_images.part000000000069/GATA5.3_1218_10000_0.539_0.6337_0.985.png
                gene_name: GATA5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 62 percent done.
GATAD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.444432e-02	ci left: 8.739813e-01	ci right 8.867962e-01	k: 8805	n:10000
KS ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
GATAD2A   10000 perm   2 sec   (6010 perm/sec)   p_kst 8.357000e-01   p_cons 8.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GATAD2A.3_1946_10000_0.8357_0.8805_1.png
                gene_name: GATAD2A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
GATS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
Cons ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
GATS   10000 perm   1 sec   (6942 perm/sec)   p_kst 3.329000e-01   p_cons 4.373000e-01   p_joint 4.546000e-01

Outputting figure to mutsig2_images.part000000000069/GATS.3_508_10000_0.3329_0.4373_0.4546.png
                gene_name: GATS
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 65 percent done.
GBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
Cons ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KS ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
GBA   10000 perm   2 sec   (6186 perm/sec)   p_kst 5.071000e-01   p_cons 1.857000e-01   p_joint 4.411000e-01

Outputting figure to mutsig2_images.part000000000069/GBA.3_1655_10000_0.5071_0.1857_0.4411.png
                gene_name: GBA
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 66 percent done.
GBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
Cons ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
KS ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
GBP1   10000 perm   2 sec   (5769 perm/sec)   p_kst 1.879000e-01   p_cons 8.093000e-01   p_joint 4.528000e-01

Outputting figure to mutsig2_images.part000000000069/GBP1.3_1819_10000_0.1879_0.8093_0.4528.png
                gene_name: GBP1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
GBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
GBP3   10000 perm   2 sec   (6126 perm/sec)   p_kst 9.900000e-03   p_cons 3.225000e-01   p_joint 2.400000e-02

Joint ci ratio: 1.503973e-01	ci left: 3.037464e-02	ci right 3.536238e-02	k: 656	n:20000
Cons ci ratio: 3.975628e-02	ci left: 3.205488e-01	ci right 3.336016e-01	k: 6541	n:20000
KS ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
GBP3   20000 perm   4 sec   (5365 perm/sec)   p_kst 1.130000e-02   p_cons 3.270500e-01   p_joint 3.280000e-02

Joint ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
Cons ci ratio: 3.251010e-02	ci left: 3.210944e-01	ci right 3.317392e-01	k: 9792	n:30000
KS ci ratio: 2.098253e-01	ci left: 1.029273e-02	ci right 1.273658e-02	k: 344	n:30000
GBP3   30000 perm   6 sec   (5084 perm/sec)   p_kst 1.146667e-02   p_cons 3.264000e-01   p_joint 1.963333e-02

Joint ci ratio: 1.157990e-01	ci left: 2.623506e-02	ci right 2.948397e-02	k: 1113	n:40000
Cons ci ratio: 2.811993e-02	ci left: 3.223531e-01	ci right 3.315720e-01	k: 13078	n:40000
KS ci ratio: 1.817148e-01	ci left: 1.045435e-02	ci right 1.256746e-02	k: 459	n:40000
GBP3   40000 perm   8 sec   (4887 perm/sec)   p_kst 1.147500e-02   p_cons 3.269500e-01   p_joint 2.782500e-02

Joint ci ratio: 1.289019e-01	ci left: 1.698825e-02	ci right 1.934816e-02	k: 907	n:50000
Cons ci ratio: 2.615193e-02	ci left: 3.059672e-01	ci right 3.140949e-01	k: 15501	n:50000
KS ci ratio: 1.619621e-01	ci left: 1.064149e-02	ci right 1.253585e-02	k: 578	n:50000
GBP3   50000 perm   11 sec   (4745 perm/sec)   p_kst 1.156000e-02   p_cons 3.100200e-01   p_joint 1.814000e-02

Joint ci ratio: 9.973560e-02	ci left: 2.384675e-02	ci right 2.636614e-02	k: 1505	n:60000
Cons ci ratio: 2.382729e-02	ci left: 3.071475e-01	ci right 3.145709e-01	k: 18651	n:60000
KS ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
GBP3   60000 perm   13 sec   (4613 perm/sec)   p_kst 1.150000e-02   p_cons 3.108500e-01   p_joint 2.508333e-02

Joint ci ratio: 8.654805e-02	ci left: 2.723782e-02	ci right 2.971576e-02	k: 1992	n:70000
Cons ci ratio: 2.199864e-02	ci left: 3.086112e-01	ci right 3.154901e-01	k: 21843	n:70000
KS ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
GBP3   70000 perm   16 sec   (4496 perm/sec)   p_kst 1.151429e-02   p_cons 3.120429e-01   p_joint 2.845714e-02

Joint ci ratio: 1.215925e-01	ci left: 1.204463e-02	ci right 1.361600e-02	k: 1025	n:80000
Cons ci ratio: 2.055186e-02	ci left: 3.093759e-01	ci right 3.158127e-01	k: 25007	n:80000
KS ci ratio: 1.291330e-01	ci left: 1.065167e-02	ci right 1.213408e-02	k: 910	n:80000
GBP3   80000 perm   18 sec   (4399 perm/sec)   p_kst 1.137500e-02   p_cons 3.125875e-01   p_joint 1.281250e-02

Joint ci ratio: 1.002985e-01	ci left: 1.585118e-02	ci right 1.753574e-02	k: 1501	n:90000
Cons ci ratio: 1.933648e-02	ci left: 3.104475e-01	ci right 3.165201e-01	k: 28213	n:90000
KS ci ratio: 1.224065e-01	ci left: 1.057658e-02	ci right 1.196630e-02	k: 1013	n:90000
GBP3   90000 perm   21 sec   (4301 perm/sec)   p_kst 1.125556e-02   p_cons 3.134778e-01   p_joint 1.667778e-02

Joint ci ratio: 7.485750e-02	ci left: 2.568997e-02	ci right 2.769761e-02	k: 2668	n:100000
Cons ci ratio: 1.836847e-02	ci left: 3.100366e-01	ci right 3.157942e-01	k: 31291	n:100000
KS ci ratio: 1.160036e-01	ci left: 1.063466e-02	ci right 1.195392e-02	k: 1128	n:100000
GBP3   100000 perm   24 sec   (4211 perm/sec)   p_kst 1.128000e-02   p_cons 3.129100e-01   p_joint 2.668000e-02

Joint ci ratio: 7.178819e-02	ci left: 2.544267e-02	ci right 2.734605e-02	k: 2902	n:110000
Cons ci ratio: 1.685980e-02	ci left: 3.267223e-01	ci right 3.322867e-01	k: 36245	n:110000
KS ci ratio: 1.098870e-01	ci left: 1.080754e-02	ci right 1.207297e-02	k: 1257	n:110000
GBP3   110000 perm   27 sec   (4129 perm/sec)   p_kst 1.142727e-02   p_cons 3.295000e-01   p_joint 2.638182e-02

Joint ci ratio: 7.361617e-02	ci left: 2.223288e-02	ci right 2.394027e-02	k: 2769	n:120000
Cons ci ratio: 1.613628e-02	ci left: 3.269986e-01	ci right 3.323263e-01	k: 39559	n:120000
KS ci ratio: 1.053395e-01	ci left: 1.080702e-02	ci right 1.201677e-02	k: 1368	n:120000
GBP3   120000 perm   30 sec   (4054 perm/sec)   p_kst 1.140000e-02   p_cons 3.296583e-01   p_joint 2.307500e-02

Joint ci ratio: 5.833477e-02	ci left: 3.258910e-02	ci right 3.455485e-02	k: 4363	n:130000
Cons ci ratio: 1.551070e-02	ci left: 3.268912e-01	ci right 3.320088e-01	k: 42828	n:130000
KS ci ratio: 1.018719e-01	ci left: 1.068751e-02	ci right 1.184214e-02	k: 1463	n:130000
GBP3   130000 perm   33 sec   (3979 perm/sec)   p_kst 1.125385e-02   p_cons 3.294462e-01   p_joint 3.356154e-02

Joint ci ratio: 5.659202e-02	ci left: 3.219718e-02	ci right 3.407936e-02	k: 4638	n:140000
Cons ci ratio: 1.551718e-02	ci left: 3.106782e-01	ci right 3.155438e-01	k: 43835	n:140000
KS ci ratio: 9.787211e-02	ci left: 1.077380e-02	ci right 1.188943e-02	k: 1585	n:140000
GBP3   140000 perm   36 sec   (3906 perm/sec)   p_kst 1.132143e-02   p_cons 3.131071e-01   p_joint 3.312857e-02

Outputting figure to mutsig2_images.part000000000069/GBP3.3_1828_140000_0.011321_0.31311_0.033129.png
                gene_name: GBP3
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 69 percent done.
GBP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524259e-02	ci left: 8.619232e-01	ci right 8.752613e-01	k: 8687	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
GBP7   10000 perm   2 sec   (6387 perm/sec)   p_kst 9.268000e-01   p_cons 5.006000e-01   p_joint 8.687000e-01

Outputting figure to mutsig2_images.part000000000069/GBP7.3_1957_10000_0.9268_0.5006_0.8687.png
                gene_name: GBP7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 71 percent done.
GBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
Cons ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
KS ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
GBX2   10000 perm   2 sec   (6606 perm/sec)   p_kst 3.817000e-01   p_cons 5.579000e-01   p_joint 3.001000e-01

Outputting figure to mutsig2_images.part000000000069/GBX2.3_1055_10000_0.3817_0.5579_0.3001.png
                gene_name: GBX2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 72 percent done.
GCDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
GCDH   10000 perm   1 sec   (6864 perm/sec)   p_kst 3.460000e-02   p_cons 1.716000e-01   p_joint 7.270000e-02

Joint ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
Cons ci ratio: 6.017243e-02	ci left: 1.697565e-01	ci right 1.803381e-01	k: 3500	n:20000
KS ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
GCDH   20000 perm   3 sec   (5928 perm/sec)   p_kst 3.570000e-02   p_cons 1.750000e-01   p_joint 3.835000e-02

Joint ci ratio: 9.917276e-02	ci left: 4.703999e-02	ci right 5.198105e-02	k: 1484	n:30000
Cons ci ratio: 4.902618e-02	ci left: 1.713425e-01	ci right 1.799871e-01	k: 5269	n:30000
KS ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
GCDH   30000 perm   5 sec   (5578 perm/sec)   p_kst 3.816667e-02   p_cons 1.756333e-01   p_joint 4.946667e-02

Joint ci ratio: 8.915632e-02	ci left: 4.404101e-02	ci right 4.817521e-02	k: 1843	n:40000
Cons ci ratio: 4.222735e-02	ci left: 1.734939e-01	ci right 1.810030e-01	k: 7089	n:40000
KS ci ratio: 9.888669e-02	ci left: 3.592777e-02	ci right 3.968971e-02	k: 1511	n:40000
GCDH   40000 perm   7 sec   (5363 perm/sec)   p_kst 3.777500e-02   p_cons 1.772250e-01   p_joint 4.607500e-02

Outputting figure to mutsig2_images.part000000000069/GCDH.3_1409_40000_0.037775_0.17722_0.046075.png
                gene_name: GCDH
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 74 percent done.
GCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
Cons ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
KS ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
GCM2   10000 perm   2 sec   (5984 perm/sec)   p_kst 3.637000e-01   p_cons 1.831000e-01   p_joint 1.971000e-01

Outputting figure to mutsig2_images.part000000000069/GCM2.3_1541_10000_0.3637_0.1831_0.1971.png
                gene_name: GCM2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 75 percent done.
GCNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
KS ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
GCNT3   10000 perm   2 sec   (6272 perm/sec)   p_kst 8.667000e-01   p_cons 5.603000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCNT3.3_1321_10000_0.8667_0.5603_1.png
                gene_name: GCNT3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
GCNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
Cons ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
GCNT4   10000 perm   2 sec   (6087 perm/sec)   p_kst 2.057000e-01   p_cons 2.149000e-01   p_joint 1.703000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT4.3_1366_10000_0.2057_0.2149_0.1703.png
                gene_name: GCNT4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 78 percent done.
GDAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
Cons ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
KS ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
GDAP1L1   10000 perm   1 sec   (7068 perm/sec)   p_kst 4.637000e-01   p_cons 4.028000e-01   p_joint 4.194000e-01

Outputting figure to mutsig2_images.part000000000069/GDAP1L1.3_1128_10000_0.4637_0.4028_0.4194.png
                gene_name: GDAP1L1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 80 percent done.
GDAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
GDAP2   10000 perm   2 sec   (5828 perm/sec)   p_kst 9.620000e-01   p_cons 8.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GDAP2.3_1591_10000_0.962_0.834_1.png
                gene_name: GDAP2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GALT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
GALT   10000 perm   2 sec   (6570 perm/sec)   p_kst 5.058000e-01   p_cons 8.451000e-01   p_joint 9.387000e-01

Outputting figure to mutsig2_images.part000000000069/GALT.2_1184_10000_0.5058_0.8451_0.9387.png
                gene_name: GALT
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 83 percent done.
GAS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
GAS6   10000 perm   2 sec   (5960 perm/sec)   p_kst 2.999000e-01   p_cons 1.703000e-01   p_joint 3.194000e-01

Outputting figure to mutsig2_images.part000000000069/GAS6.2_2097_10000_0.2999_0.1703_0.3194.png
                gene_name: GAS6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 85 percent done.
GAS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
GAS8   10000 perm   1 sec   (6763 perm/sec)   p_kst 1.250000e-02   p_cons 2.303000e-01   p_joint 1.068000e-01

Joint ci ratio: 4.318740e-02	ci left: 2.854061e-01	ci right 2.980545e-01	k: 5834	n:20000
Cons ci ratio: 5.082399e-02	ci left: 2.233895e-01	ci right 2.350893e-01	k: 4584	n:20000
KS ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
GAS8   20000 perm   3 sec   (5905 perm/sec)   p_kst 1.360000e-02   p_cons 2.292000e-01   p_joint 2.917000e-01

Joint ci ratio: 2.783457e-02	ci left: 3.924212e-01	ci right 4.035319e-01	k: 11939	n:30000
Cons ci ratio: 4.155459e-02	ci left: 2.239903e-01	ci right 2.335290e-01	k: 6862	n:30000
KS ci ratio: 1.941943e-01	ci left: 1.209779e-02	ci right 1.473103e-02	k: 401	n:30000
GAS8   30000 perm   5 sec   (5575 perm/sec)   p_kst 1.336667e-02   p_cons 2.287333e-01   p_joint 3.979667e-01

Joint ci ratio: 4.738866e-02	ci left: 1.426024e-01	ci right 1.495491e-01	k: 5842	n:40000
Cons ci ratio: 3.595852e-02	ci left: 2.249143e-01	ci right 2.331750e-01	k: 9161	n:40000
KS ci ratio: 1.664551e-01	ci left: 1.253581e-02	ci right 1.483559e-02	k: 546	n:40000
GAS8   40000 perm   7 sec   (5359 perm/sec)   p_kst 1.365000e-02   p_cons 2.290250e-01   p_joint 1.460500e-01

Joint ci ratio: 2.517611e-02	ci left: 3.224098e-01	ci right 3.306503e-01	k: 16326	n:50000
Cons ci ratio: 3.222528e-02	ci left: 2.246665e-01	ci right 2.320450e-01	k: 11417	n:50000
KS ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
GAS8   50000 perm   10 sec   (5134 perm/sec)   p_kst 1.402000e-02   p_cons 2.283400e-01   p_joint 3.265200e-01

Joint ci ratio: 3.870959e-02	ci left: 1.431339e-01	ci right 1.488004e-01	k: 8757	n:60000
Cons ci ratio: 2.934344e-02	ci left: 2.258748e-01	ci right 2.326181e-01	k: 13754	n:60000
KS ci ratio: 1.349549e-01	ci left: 1.293011e-02	ci right 1.481734e-02	k: 831	n:60000
GAS8   60000 perm   12 sec   (5006 perm/sec)   p_kst 1.385000e-02   p_cons 2.292333e-01   p_joint 1.459500e-01

Joint ci ratio: 3.448848e-02	ci left: 1.531064e-01	ci right 1.584936e-01	k: 10905	n:70000
Cons ci ratio: 2.722344e-02	ci left: 2.253938e-01	ci right 2.316287e-01	k: 15995	n:70000
KS ci ratio: 1.238913e-01	ci left: 1.322577e-02	ci right 1.498627e-02	k: 986	n:70000
GAS8   70000 perm   14 sec   (4884 perm/sec)   p_kst 1.408571e-02   p_cons 2.285000e-01   p_joint 1.557857e-01

Joint ci ratio: 3.350730e-02	ci left: 1.436342e-01	ci right 1.485415e-01	k: 11686	n:80000
Cons ci ratio: 2.546805e-02	ci left: 2.255568e-01	ci right 2.313879e-01	k: 18277	n:80000
KS ci ratio: 1.161512e-01	ci left: 1.322154e-02	ci right 1.486398e-02	k: 1122	n:80000
GAS8   80000 perm   17 sec   (4772 perm/sec)   p_kst 1.402500e-02   p_cons 2.284625e-01   p_joint 1.460750e-01

Joint ci ratio: 3.145785e-02	ci left: 1.448249e-01	ci right 1.494646e-01	k: 13242	n:90000
Cons ci ratio: 2.395094e-02	ci left: 2.266121e-01	ci right 2.321165e-01	k: 20642	n:90000
KS ci ratio: 1.097455e-01	ci left: 1.321012e-02	ci right 1.475477e-02	k: 1257	n:90000
GAS8   90000 perm   19 sec   (4667 perm/sec)   p_kst 1.396667e-02   p_cons 2.293556e-01   p_joint 1.471333e-01

Joint ci ratio: 2.865931e-02	ci left: 1.553367e-01	ci right 1.598632e-01	k: 15759	n:100000
Cons ci ratio: 2.267611e-02	ci left: 2.274643e-01	ci right 2.326914e-01	k: 23007	n:100000
KS ci ratio: 1.042947e-01	ci left: 1.320298e-02	ci right 1.466541e-02	k: 1392	n:100000
GAS8   100000 perm   22 sec   (4571 perm/sec)   p_kst 1.392000e-02   p_cons 2.300700e-01   p_joint 1.575900e-01

Joint ci ratio: 2.731998e-02	ci left: 1.554965e-01	ci right 1.598125e-01	k: 17341	n:110000
Cons ci ratio: 2.164071e-02	ci left: 2.272621e-01	ci right 2.322431e-01	k: 25272	n:110000
KS ci ratio: 9.958294e-02	ci left: 1.319870e-02	ci right 1.459074e-02	k: 1527	n:110000
GAS8   110000 perm   25 sec   (4480 perm/sec)   p_kst 1.388182e-02   p_cons 2.297455e-01   p_joint 1.576455e-01

Outputting figure to mutsig2_images.part000000000069/GAS8.2_1481_110000_0.013882_0.22975_0.15765.png
                gene_name: GAS8
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 86 percent done.
GAST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
Cons ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
KS ci ratio: 2.494822e-02	ci left: 7.027112e-01	ci right 7.205654e-01	k: 7117	n:10000
GAST   10000 perm   1 sec   (7303 perm/sec)   p_kst 7.117000e-01   p_cons 4.782000e-01   p_joint 5.974000e-01

Outputting figure to mutsig2_images.part000000000069/GAST.2_314_10000_0.7117_0.4782_0.5974.png
                gene_name: GAST
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 88 percent done.
GATA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
Cons ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
GATA1   10000 perm   2 sec   (6516 perm/sec)   p_kst 1.087000e-01   p_cons 2.586000e-01   p_joint 4.411000e-01

Joint ci ratio: 6.301864e-02	ci left: 1.569674e-01	ci right 1.672311e-01	k: 3241	n:20000
Cons ci ratio: 4.757823e-02	ci left: 2.473335e-01	ci right 2.594383e-01	k: 5067	n:20000
KS ci ratio: 7.976226e-02	ci left: 1.034359e-01	ci right 1.120785e-01	k: 2154	n:20000
GATA1   20000 perm   3 sec   (5724 perm/sec)   p_kst 1.077000e-01   p_cons 2.533500e-01   p_joint 1.620500e-01

Outputting figure to mutsig2_images.part000000000069/GATA1.2_1262_20000_0.1077_0.25335_0.16205.png
                gene_name: GATA1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 89 percent done.
GATA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
GATA2   10000 perm   2 sec   (6052 perm/sec)   p_kst 4.060000e-02   p_cons 3.510000e-02   p_joint 7.943000e-01

Joint ci ratio: 1.406710e-02	ci left: 7.895394e-01	ci right 8.007747e-01	k: 15904	n:20000
Cons ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
KS ci ratio: 1.318881e-01	ci left: 3.950386e-02	ci right 4.513019e-02	k: 845	n:20000
GATA2   20000 perm   4 sec   (5258 perm/sec)   p_kst 4.225000e-02   p_cons 3.570000e-02   p_joint 7.952000e-01

Joint ci ratio: 1.150096e-02	ci left: 7.901514e-01	ci right 7.993248e-01	k: 23843	n:30000
Cons ci ratio: 1.186605e-01	ci left: 3.301359e-02	ci right 3.721040e-02	k: 1052	n:30000
KS ci ratio: 1.066384e-01	ci left: 4.079715e-02	ci right 4.542520e-02	k: 1292	n:30000
GATA2   30000 perm   6 sec   (4918 perm/sec)   p_kst 4.306667e-02   p_cons 3.506667e-02   p_joint 7.947667e-01

Joint ci ratio: 3.943714e-02	ci left: 1.941540e-01	ci right 2.019899e-01	k: 7922	n:40000
Cons ci ratio: 1.015699e-01	ci left: 3.407370e-02	ci right 3.774407e-02	k: 1435	n:40000
KS ci ratio: 9.314515e-02	ci left: 4.042168e-02	ci right 4.439510e-02	k: 1695	n:40000
GATA2   40000 perm   9 sec   (4657 perm/sec)   p_kst 4.237500e-02   p_cons 3.587500e-02   p_joint 1.980500e-01

Joint ci ratio: 3.634043e-02	ci left: 1.853382e-01	ci right 1.922180e-01	k: 9438	n:50000
Cons ci ratio: 9.140309e-02	ci left: 3.385598e-02	ci right 3.711824e-02	k: 1773	n:50000
KS ci ratio: 8.292445e-02	ci left: 4.100325e-02	ci right 4.457008e-02	k: 2138	n:50000
GATA2   50000 perm   11 sec   (4509 perm/sec)   p_kst 4.276000e-02   p_cons 3.546000e-02   p_joint 1.887600e-01

Outputting figure to mutsig2_images.part000000000069/GATA2.2_1463_50000_0.04276_0.03546_0.18876.png
                gene_name: GATA2
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
GATAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
Cons ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
KS ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
GATAD1   10000 perm   2 sec   (6418 perm/sec)   p_kst 4.335000e-01   p_cons 6.622000e-01   p_joint 7.114000e-01

Outputting figure to mutsig2_images.part000000000069/GATAD1.2_830_10000_0.4335_0.6622_0.7114.png
                gene_name: GATAD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 92 percent done.
GBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
GBA2   10000 perm   2 sec   (5708 perm/sec)   p_kst 2.468000e-01   p_cons 5.290000e-02   p_joint 5.037000e-01

Joint ci ratio: 1.174967e-02	ci left: 8.426448e-01	ci right 8.526539e-01	k: 16954	n:20000
Cons ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
KS ci ratio: 4.840978e-02	ci left: 2.408864e-01	ci right 2.528873e-01	k: 4937	n:20000
GBA2   20000 perm   4 sec   (5069 perm/sec)   p_kst 2.468500e-01   p_cons 5.260000e-02   p_joint 8.477000e-01

Joint ci ratio: 9.580993e-03	ci left: 8.439207e-01	ci right 8.520784e-01	k: 25441	n:30000
Cons ci ratio: 9.544401e-02	ci left: 5.068706e-02	ci right 5.579990e-02	k: 1596	n:30000
KS ci ratio: 3.932562e-02	ci left: 2.438827e-01	ci right 2.536993e-01	k: 7463	n:30000
GBA2   30000 perm   6 sec   (4848 perm/sec)   p_kst 2.487667e-01   p_cons 5.320000e-02   p_joint 8.480333e-01

Outputting figure to mutsig2_images.part000000000069/GBA2.2_2852_30000_0.24877_0.0532_0.84803.png
                gene_name: GBA2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 94 percent done.
GBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
KS ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
GBE1   10000 perm   2 sec   (6005 perm/sec)   p_kst 8.725000e-01   p_cons 7.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GBE1.2_2173_10000_0.8725_0.7541_1.png
                gene_name: GBE1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
GCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
KS ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
GCNT2   10000 perm   2 sec   (5479 perm/sec)   p_kst 9.816000e-01   p_cons 9.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCNT2.2_3073_10000_0.9816_0.9908_1.png
                gene_name: GCNT2
               theta_stop: 0.0054 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
GCOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
GCOM1   10000 perm   2 sec   (6530 perm/sec)   p_kst 4.666000e-01   p_cons 5.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCOM1.2_1810_10000_0.4666_0.5894_1.png
                gene_name: GCOM1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GDF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
Cons ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
KS ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
GDF15   10000 perm   1 sec   (6907 perm/sec)   p_kst 9.794000e-01   p_cons 6.941000e-01   p_joint 8.559000e-01

Outputting figure to mutsig2_images.part000000000069/GDF15.2_935_10000_0.9794_0.6941_0.8559.png
                gene_name: GDF15
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000069
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 69 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 4421981: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000070> was used as the working directory.
Started at Wed Oct 24 17:48:12 2012
Results reported at Wed Oct 24 18:34:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000070.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000070.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 70  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000070.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2953.72 sec.
    Max Memory :      5363 MB
    Max Swap   :      7911 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
70
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 70
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 70: processing genes 6243 - 6333
Calculating significance of each gene.
Using projection method.
6243	GDF7	7.164679e-01
6244	GDF9	6.988159e-01
6245	GDI1	5.903499e-01
6246	GDI2	9.330698e-01
6247	GDNF	5.328118e-02
6248	GDPD1	1
6249	GDPD2	1
6250	GDPD3	1
6251	GDPD4	4.976220e-01
6252	GDPD5	9.658775e-01
6253	GEFT	7.647858e-01
6254	GEM	1.415824e-02
6255	GEMIN4	9.941034e-01
6256	GEMIN5	9.786966e-01
6257	GEMIN6	1
6258	GEMIN7	5.851461e-01
6259	GEMIN8	2.002923e-01
6260	GEN1	6.637097e-01
6261	GET4	6.339349e-01
6262	GFAP	1
6263	GFER	1.577790e-01
6264	GFI1	8.276344e-01
6265	GFI1B	1
6266	GFM1	8.279821e-01
6267	GFM2	9.469553e-01
6268	GFOD1	1
6269	GFOD2	5.952874e-01
6270	GFPT1	7.566735e-01
6271	GFPT2	4.182684e-01
6272	GFRA1	7.320080e-02
6273	GFRA2	7.211094e-01
6274	GFRA3	1
6275	GFRAL	4.465939e-01
6276	GGA1	1
6277	GGA2	1
6278	GGA3	9.797862e-01
6279	GGCT	4.370401e-01
6280	GGCX	5.540892e-01
6281	GGH	7.618300e-02
6282	GGN	1.967335e-02
6283	GGNBP2	9.132391e-01
6284	GGPS1	7.127028e-01
6285	GGT1	9.116452e-01
6286	GGT5	8.432516e-01
6287	GGT6	9.197942e-01
6288	GGT7	7.584089e-01
6289	GGTLC1	7.725329e-02
6290	GGTLC2	1
6291	GH1	1
6292	GH2	5.983283e-01
6293	GHDC	1
6294	GHITM	1
6295	GHR	9.182316e-01
6296	GHRH	1
6297	GHRHR	5.095605e-01
6298	GHRL	1
6299	GHSR	6.311586e-01
6300	GIF	5.387218e-01
6301	GIGYF1	9.794077e-01
6302	GIGYF2	1
6303	GIMAP1	5.599546e-01
6304	GIMAP2	8.986206e-02
6305	GIMAP4	1
6306	GIMAP5	1.522604e-02
6307	GIMAP6	6.445833e-01
6308	GIMAP7	4.829267e-01
6309	GIMAP8	1
6310	GIN1	9.104028e-01
6311	GINS1	5.095233e-01
6312	GINS2	5.701568e-01
6313	GINS3	6.288534e-01
6314	GINS4	5.458996e-01
6315	GIP	1.310934e-01
6316	GIPC1	4.328223e-01
6317	GIPC2	4.111865e-01
6318	GIPC3	4.038312e-01
6319	GIPR	1
6320	GIT1	1
6321	GIT2	1
6322	GJA1	2.799001e-02
6323	GJA10	3.224192e-01
6324	GJA3	1
6325	GJA4	1
6326	GJA5	4.266438e-01
6327	GJA8	1.557378e-02
6328	GJA9	3.952670e-01
6329	GJB1	8.933623e-02
6330	GJB2	1
6331	GJB3	8.926996e-01
6332	GJB4	5.153783e-02
6333	GJB5	6.694200e-01
Done

Running MutSig 2:
Scatter job 70: processing genes 6243 - 6333
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GFRAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
Cons ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
KS ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
GFRAL   10000 perm   2 sec   (4809 perm/sec)   p_kst 1.568000e-01   p_cons 2.446000e-01   p_joint 2.201000e-01

Outputting figure to mutsig2_images.part000000000070/GFRAL.14_1221_10000_0.1568_0.2446_0.2201.png
                gene_name: GFRAL
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
GIMAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
Cons ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
KS ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
GIMAP8   10000 perm   2 sec   (5078 perm/sec)   p_kst 1.496000e-01   p_cons 3.411000e-01   p_joint 2.013000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP8.10_2014_10000_0.1496_0.3411_0.2013.png
                gene_name: GIMAP8
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 4 percent done.
GFRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
Cons ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
KS ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
GFRA1   10000 perm   2 sec   (5994 perm/sec)   p_kst 1.537000e-01   p_cons 1.337000e-01   p_joint 1.280000e-01

Joint ci ratio: 6.154084e-02	ci left: 1.634346e-01	ci right 1.738619e-01	k: 3372	n:20000
Cons ci ratio: 7.096984e-02	ci left: 1.276330e-01	ci right 1.370741e-01	k: 2646	n:20000
KS ci ratio: 6.553325e-02	ci left: 1.467542e-01	ci right 1.567472e-01	k: 3034	n:20000
GFRA1   20000 perm   4 sec   (5304 perm/sec)   p_kst 1.517000e-01   p_cons 1.323000e-01   p_joint 1.686000e-01

Outputting figure to mutsig2_images.part000000000070/GFRA1.8_1438_20000_0.1517_0.1323_0.1686.png
                gene_name: GFRA1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 6 percent done.
GGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
Cons ci ratio: 7.831486e-03	ci left: 9.577516e-01	ci right 9.653765e-01	k: 9617	n:10000
KS ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
GGN   10000 perm   2 sec   (5215 perm/sec)   p_kst 3.556000e-01   p_cons 9.617000e-01   p_joint 4.903000e-01

Outputting figure to mutsig2_images.part000000000070/GGN.7_1967_10000_0.3556_0.9617_0.4903.png
                gene_name: GGN
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 8 percent done.
GIMAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
KS ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
GIMAP1   10000 perm   2 sec   (5333 perm/sec)   p_kst 2.503000e-01   p_cons 1.554000e-01   p_joint 2.551000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP1.7_929_10000_0.2503_0.1554_0.2551.png
                gene_name: GIMAP1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 9 percent done.
GJA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
Cons ci ratio: 4.106480e-02	ci left: 4.668688e-01	ci right 4.865448e-01	k: 4767	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
GJA8   10000 perm   2 sec   (5302 perm/sec)   p_kst 1.050000e-01   p_cons 4.767000e-01   p_joint 2.463000e-01

Joint ci ratio: 6.023501e-02	ci left: 1.694601e-01	ci right 1.800346e-01	k: 3494	n:20000
Cons ci ratio: 2.907445e-02	ci left: 4.691573e-01	ci right 4.830497e-01	k: 9522	n:20000
KS ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
GJA8   20000 perm   4 sec   (4723 perm/sec)   p_kst 1.039000e-01   p_cons 4.761000e-01   p_joint 1.747000e-01

Outputting figure to mutsig2_images.part000000000070/GJA8.7_1306_20000_0.1039_0.4761_0.1747.png
                gene_name: GJA8
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 11 percent done.
GEFT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
KS ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
GEFT   10000 perm   2 sec   (5014 perm/sec)   p_kst 2.849000e-01   p_cons 5.740000e-01   p_joint 4.028000e-01

Outputting figure to mutsig2_images.part000000000070/GEFT.6_2025_10000_0.2849_0.574_0.4028.png
                gene_name: GEFT
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 13 percent done.
GEM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
Cons ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
GEM   10000 perm   2 sec   (5825 perm/sec)   p_kst 9.930000e-02   p_cons 7.580000e-02   p_joint 8.170000e-02

Joint ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
Cons ci ratio: 9.477110e-02	ci left: 7.505352e-02	ci right 8.256947e-02	k: 1575	n:20000
KS ci ratio: 8.258185e-02	ci left: 9.705339e-02	ci right 1.054629e-01	k: 2024	n:20000
GEM   20000 perm   4 sec   (5180 perm/sec)   p_kst 1.012000e-01   p_cons 7.875000e-02   p_joint 5.595000e-02

Joint ci ratio: 8.884641e-02	ci left: 5.821980e-02	ci right 6.366561e-02	k: 1827	n:30000
Cons ci ratio: 7.891301e-02	ci left: 7.299309e-02	ci right 7.902266e-02	k: 2279	n:30000
KS ci ratio: 6.732347e-02	ci left: 9.810476e-02	ci right 1.049726e-01	k: 3045	n:30000
GEM   30000 perm   6 sec   (4897 perm/sec)   p_kst 1.015000e-01   p_cons 7.596667e-02   p_joint 6.090000e-02

Outputting figure to mutsig2_images.part000000000070/GEM.6_907_30000_0.1015_0.075967_0.0609.png
                gene_name: GEM
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.064 

Current progress: 15 percent done.
GFPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
Cons ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
KS ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
GFPT2   10000 perm   2 sec   (5281 perm/sec)   p_kst 5.222000e-01   p_cons 2.887000e-01   p_joint 6.681000e-01

Outputting figure to mutsig2_images.part000000000070/GFPT2.6_2125_10000_0.5222_0.2887_0.6681.png
                gene_name: GFPT2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 17 percent done.
GIMAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
KS ci ratio: 3.534585e-02	ci left: 5.416885e-01	ci right 5.612815e-01	k: 5515	n:10000
GIMAP5   10000 perm   2 sec   (5387 perm/sec)   p_kst 5.515000e-01   p_cons 7.132000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP5.6_932_10000_0.5515_0.7132_0.6988.png
                gene_name: GIMAP5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 19 percent done.
GJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
Cons ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
KS ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
GJA1   10000 perm   2 sec   (5251 perm/sec)   p_kst 7.278000e-01   p_cons 6.054000e-01   p_joint 8.124000e-01

Outputting figure to mutsig2_images.part000000000070/GJA1.6_1153_10000_0.7278_0.6054_0.8124.png
                gene_name: GJA1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 21 percent done.
GDNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
GDNF   10000 perm   2 sec   (6115 perm/sec)   p_kst 2.594000e-01   p_cons 8.720000e-02   p_joint 1.163000e-01

Joint ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
Cons ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
KS ci ratio: 4.691481e-02	ci left: 2.526413e-01	ci right 2.648290e-01	k: 5174	n:20000
GDNF   20000 perm   4 sec   (5407 perm/sec)   p_kst 2.587000e-01   p_cons 8.145000e-02   p_joint 1.194000e-01

Outputting figure to mutsig2_images.part000000000070/GDNF.5_643_20000_0.2587_0.08145_0.1194.png
                gene_name: GDNF
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 23 percent done.
GEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568697e-02	ci left: 8.550847e-01	ci right 8.687038e-01	k: 8620	n:10000
Cons ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
KS ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
GEN1   10000 perm   2 sec   (5164 perm/sec)   p_kst 8.382000e-01   p_cons 4.727000e-01   p_joint 8.620000e-01

Outputting figure to mutsig2_images.part000000000070/GEN1.5_2779_10000_0.8382_0.4727_0.862.png
                gene_name: GEN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 25 percent done.
GGNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
Cons ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
KS ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
GGNBP2   10000 perm   2 sec   (5188 perm/sec)   p_kst 6.900000e-03   p_cons 4.580000e-01   p_joint 6.100000e-02

Joint ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
Cons ci ratio: 2.990322e-02	ci left: 4.551713e-01	ci right 4.690397e-01	k: 9242	n:20000
KS ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
GGNBP2   20000 perm   4 sec   (4683 perm/sec)   p_kst 7.850000e-03   p_cons 4.621000e-01   p_joint 2.905000e-02

Joint ci ratio: 1.585573e-01	ci left: 1.838165e-02	ci right 2.157893e-02	k: 598	n:30000
Cons ci ratio: 2.447228e-02	ci left: 4.553133e-01	ci right 4.666275e-01	k: 13829	n:30000
KS ci ratio: 2.504435e-01	ci left: 7.085644e-03	ci right 9.144660e-03	k: 242	n:30000
GGNBP2   30000 perm   7 sec   (4499 perm/sec)   p_kst 8.066667e-03   p_cons 4.609667e-01   p_joint 1.993333e-02

Joint ci ratio: 1.239995e-01	ci left: 2.286163e-02	ci right 2.590796e-02	k: 974	n:40000
Cons ci ratio: 2.070644e-02	ci left: 4.676471e-01	ci right 4.774569e-01	k: 18902	n:40000
KS ci ratio: 2.126320e-01	ci left: 7.528943e-03	ci right 9.343505e-03	k: 336	n:40000
GGNBP2   40000 perm   9 sec   (4357 perm/sec)   p_kst 8.400000e-03   p_cons 4.725500e-01   p_joint 2.435000e-02

Joint ci ratio: 1.356798e-01	ci left: 1.530489e-02	ci right 1.755176e-02	k: 820	n:50000
Cons ci ratio: 1.852984e-02	ci left: 4.679158e-01	ci right 4.766874e-01	k: 23615	n:50000
KS ci ratio: 1.893362e-01	ci left: 7.694905e-03	ci right 9.322930e-03	k: 424	n:50000
GGNBP2   50000 perm   12 sec   (4261 perm/sec)   p_kst 8.480000e-03   p_cons 4.723000e-01   p_joint 1.640000e-02

Joint ci ratio: 1.075784e-01	ci left: 2.048410e-02	ci right 2.282916e-02	k: 1298	n:60000
Cons ci ratio: 1.689340e-02	ci left: 4.689482e-01	ci right 4.769545e-01	k: 28377	n:60000
KS ci ratio: 1.700049e-01	ci left: 8.036275e-03	ci right 9.545148e-03	k: 526	n:60000
GGNBP2   60000 perm   14 sec   (4162 perm/sec)   p_kst 8.766667e-03   p_cons 4.729500e-01   p_joint 2.163333e-02

Joint ci ratio: 1.108309e-01	ci left: 1.658321e-02	ci right 1.854278e-02	k: 1228	n:70000
Cons ci ratio: 1.565040e-02	ci left: 4.689242e-01	ci right 4.763352e-01	k: 33084	n:70000
KS ci ratio: 1.593449e-01	ci left: 7.888098e-03	ci right 9.267388e-03	k: 599	n:70000
GGNBP2   70000 perm   17 sec   (4082 perm/sec)   p_kst 8.557143e-03   p_cons 4.726286e-01   p_joint 1.754286e-02

Joint ci ratio: 1.001919e-01	ci left: 1.783350e-02	ci right 1.972663e-02	k: 1501	n:80000
Cons ci ratio: 1.466437e-02	ci left: 4.683231e-01	ci right 4.752540e-01	k: 37743	n:80000
KS ci ratio: 1.500181e-01	ci left: 7.827335e-03	ci right 9.108695e-03	k: 676	n:80000
GGNBP2   80000 perm   20 sec   (4012 perm/sec)   p_kst 8.450000e-03   p_cons 4.717875e-01   p_joint 1.876250e-02

Joint ci ratio: 9.529145e-02	ci left: 1.757538e-02	ci right 1.934474e-02	k: 1660	n:90000
Cons ci ratio: 1.381861e-02	ci left: 4.687783e-01	ci right 4.753124e-01	k: 42484	n:90000
KS ci ratio: 1.424440e-01	ci left: 7.749759e-03	ci right 8.948920e-03	k: 750	n:90000
GGNBP2   90000 perm   23 sec   (3941 perm/sec)   p_kst 8.333333e-03   p_cons 4.720444e-01   p_joint 1.844444e-02

Joint ci ratio: 9.161135e-02	ci left: 1.715565e-02	ci right 1.881247e-02	k: 1797	n:100000
Cons ci ratio: 1.311094e-02	ci left: 4.688917e-01	ci right 4.750899e-01	k: 47199	n:100000
KS ci ratio: 1.342805e-01	ci left: 7.882299e-03	ci right 9.026486e-03	k: 844	n:100000
GGNBP2   100000 perm   26 sec   (3878 perm/sec)   p_kst 8.440000e-03   p_cons 4.719900e-01   p_joint 1.797000e-02

Joint ci ratio: 8.927012e-02	ci left: 1.645765e-02	ci right 1.800431e-02	k: 1894	n:110000
Cons ci ratio: 1.248392e-02	ci left: 4.697095e-01	ci right 4.756192e-01	k: 51993	n:110000
KS ci ratio: 1.286259e-01	ci left: 7.833907e-03	ci right 8.919526e-03	k: 920	n:110000
GGNBP2   110000 perm   29 sec   (3808 perm/sec)   p_kst 8.363636e-03   p_cons 4.726636e-01   p_joint 1.721818e-02

Joint ci ratio: 8.652488e-02	ci left: 1.608852e-02	ci right 1.755163e-02	k: 2017	n:120000
Cons ci ratio: 1.195819e-02	ci left: 4.695969e-01	ci right 4.752545e-01	k: 56691	n:120000
KS ci ratio: 1.237556e-01	ci left: 7.778270e-03	ci right 8.812370e-03	k: 994	n:120000
GGNBP2   120000 perm   32 sec   (3752 perm/sec)   p_kst 8.283333e-03   p_cons 4.724250e-01   p_joint 1.680833e-02

Joint ci ratio: 8.884490e-02	ci left: 1.409792e-02	ci right 1.541616e-02	k: 1917	n:130000
Cons ci ratio: 1.149461e-02	ci left: 4.694676e-01	ci right 4.749028e-01	k: 61384	n:130000
KS ci ratio: 1.196254e-01	ci left: 7.701996e-03	ci right 8.689362e-03	k: 1064	n:130000
GGNBP2   130000 perm   35 sec   (3695 perm/sec)   p_kst 8.184615e-03   p_cons 4.721846e-01   p_joint 1.474615e-02

Joint ci ratio: 8.613389e-02	ci left: 1.395023e-02	ci right 1.521285e-02	k: 2040	n:140000
Cons ci ratio: 1.106092e-02	ci left: 4.702675e-01	ci right 4.755051e-01	k: 66204	n:140000
KS ci ratio: 1.147667e-01	ci left: 7.789756e-03	ci right 8.745064e-03	k: 1156	n:140000
GGNBP2   140000 perm   39 sec   (3636 perm/sec)   p_kst 8.257143e-03   p_cons 4.728857e-01   p_joint 1.457143e-02

Joint ci ratio: 8.082328e-02	ci left: 1.481557e-02	ci right 1.606993e-02	k: 2315	n:150000
Cons ci ratio: 1.068271e-02	ci left: 4.705039e-01	ci right 4.755638e-01	k: 70955	n:150000
KS ci ratio: 1.116333e-01	ci left: 7.697960e-03	ci right 8.614538e-03	k: 1222	n:150000
GGNBP2   150000 perm   42 sec   (3586 perm/sec)   p_kst 8.146667e-03   p_cons 4.730333e-01   p_joint 1.543333e-02

Joint ci ratio: 8.012883e-02	ci left: 1.414661e-02	ci right 1.533357e-02	k: 2357	n:160000
Cons ci ratio: 1.034977e-02	ci left: 4.702823e-01	ci right 4.751812e-01	k: 75637	n:160000
KS ci ratio: 1.082364e-01	ci left: 7.690932e-03	ci right 8.577030e-03	k: 1300	n:160000
GGNBP2   160000 perm   45 sec   (3532 perm/sec)   p_kst 8.125000e-03   p_cons 4.727312e-01   p_joint 1.473125e-02

Joint ci ratio: 8.059847e-02	ci left: 1.317009e-02	ci right 1.428188e-02	k: 2332	n:170000
Cons ci ratio: 1.004518e-02	ci left: 4.701361e-01	ci right 4.748884e-01	k: 80327	n:170000
KS ci ratio: 1.055960e-01	ci left: 7.616362e-03	ci right 8.471131e-03	k: 1366	n:170000
GGNBP2   170000 perm   49 sec   (3484 perm/sec)   p_kst 8.035294e-03   p_cons 4.725118e-01   p_joint 1.371765e-02

Joint ci ratio: 8.073487e-02	ci left: 1.240556e-02	ci right 1.345466e-02	k: 2326	n:180000
Cons ci ratio: 9.761848e-03	ci left: 4.702191e-01	ci right 4.748373e-01	k: 85055	n:180000
KS ci ratio: 1.024573e-01	ci left: 7.653175e-03	ci right 8.485008e-03	k: 1451	n:180000
GGNBP2   180000 perm   52 sec   (3436 perm/sec)   p_kst 8.061111e-03   p_cons 4.725278e-01   p_joint 1.292222e-02

Joint ci ratio: 7.528507e-02	ci left: 1.353848e-02	ci right 1.460273e-02	k: 2672	n:190000
Cons ci ratio: 9.504427e-03	ci left: 4.701267e-01	ci right 4.746215e-01	k: 89751	n:190000
KS ci ratio: 9.929013e-02	ci left: 7.732648e-03	ci right 8.545625e-03	k: 1545	n:190000
GGNBP2   190000 perm   56 sec   (3389 perm/sec)   p_kst 8.131579e-03   p_cons 4.723737e-01   p_joint 1.406316e-02

Outputting figure to mutsig2_images.part000000000070/GGNBP2.5_2146_190000_0.0081316_0.47237_0.014063.png
                gene_name: GGNBP2
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 26 percent done.
GH2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
Cons ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
GH2   10000 perm   2 sec   (6142 perm/sec)   p_kst 1.793000e-01   p_cons 6.419000e-01   p_joint 3.174000e-01

Outputting figure to mutsig2_images.part000000000070/GH2.3_1011_10000_0.1793_0.6419_0.3174.png
                gene_name: GH2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 28 percent done.
GHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
GHR   10000 perm   2 sec   (5224 perm/sec)   p_kst 6.250000e-01   p_cons 3.179000e-01   p_joint 5.328000e-01

Outputting figure to mutsig2_images.part000000000070/GHR.5_1953_10000_0.625_0.3179_0.5328.png
                gene_name: GHR
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 30 percent done.
GHRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
GHRHR   10000 perm   2 sec   (5337 perm/sec)   p_kst 2.948000e-01   p_cons 4.998000e-01   p_joint 4.201000e-01

Outputting figure to mutsig2_images.part000000000070/GHRHR.5_1364_10000_0.2948_0.4998_0.4201.png
                gene_name: GHRHR
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 32 percent done.
GIMAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
Cons ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
KS ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
GIMAP2   10000 perm   2 sec   (5781 perm/sec)   p_kst 3.393000e-01   p_cons 7.568000e-01   p_joint 5.210000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP2.5_1022_10000_0.3393_0.7568_0.521.png
                gene_name: GIMAP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 34 percent done.
GEMIN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
Cons ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
KS ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
GEMIN5   10000 perm   2 sec   (4628 perm/sec)   p_kst 6.520000e-02   p_cons 8.021000e-01   p_joint 1.137000e-01

Joint ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
Cons ci ratio: 1.414263e-02	ci left: 7.877720e-01	ci right 7.990426e-01	k: 15869	n:20000
KS ci ratio: 1.064458e-01	ci left: 6.011022e-02	ci right 6.691736e-02	k: 1269	n:20000
GEMIN5   20000 perm   5 sec   (4181 perm/sec)   p_kst 6.345000e-02   p_cons 7.934500e-01   p_joint 1.213000e-01

Joint ci ratio: 5.939952e-02	ci left: 1.229884e-01	ci right 1.305507e-01	k: 3802	n:30000
Cons ci ratio: 1.159137e-02	ci left: 7.875639e-01	ci right 7.967794e-01	k: 23766	n:30000
KS ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
GEMIN5   30000 perm   7 sec   (4031 perm/sec)   p_kst 6.423333e-02   p_cons 7.922000e-01   p_joint 1.267333e-01

Outputting figure to mutsig2_images.part000000000070/GEMIN5.4_4639_30000_0.064233_0.7922_0.12673.png
                gene_name: GEMIN5
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 36 percent done.
GFPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
Cons ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
KS ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
GFPT1   10000 perm   2 sec   (5307 perm/sec)   p_kst 1.290000e-01   p_cons 4.560000e-01   p_joint 1.851000e-01

Joint ci ratio: 3.722438e-02	ci left: 3.500076e-01	ci right 3.633341e-01	k: 7133	n:20000
Cons ci ratio: 3.148469e-02	ci left: 4.297110e-01	ci right 4.435074e-01	k: 8732	n:20000
KS ci ratio: 7.076969e-02	ci left: 1.282732e-01	ci right 1.377338e-01	k: 2659	n:20000
GFPT1   20000 perm   4 sec   (4793 perm/sec)   p_kst 1.329500e-01   p_cons 4.366000e-01   p_joint 3.566500e-01

Outputting figure to mutsig2_images.part000000000070/GFPT1.4_2122_20000_0.13295_0.4366_0.35665.png
                gene_name: GFPT1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 38 percent done.
GGCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
Cons ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
KS ci ratio: 3.635751e-02	ci left: 5.276680e-01	ci right 5.473101e-01	k: 5375	n:10000
GGCX   10000 perm   2 sec   (5340 perm/sec)   p_kst 5.375000e-01   p_cons 6.908000e-01   p_joint 7.687000e-01

Outputting figure to mutsig2_images.part000000000070/GGCX.4_2337_10000_0.5375_0.6908_0.7687.png
                gene_name: GGCX
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 40 percent done.
GGH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
Cons ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
GGH   10000 perm   2 sec   (5983 perm/sec)   p_kst 3.883000e-01   p_cons 2.108000e-01   p_joint 3.201000e-01

Outputting figure to mutsig2_images.part000000000070/GGH.4_993_10000_0.3883_0.2108_0.3201.png
                gene_name: GGH
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 42 percent done.
GHSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
KS ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
GHSR   10000 perm   2 sec   (5813 perm/sec)   p_kst 7.210000e-01   p_cons 9.419000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GHSR.4_1183_10000_0.721_0.9419_1.png
                gene_name: GHSR
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
GJA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
Cons ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
KS ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
GJA10   10000 perm   2 sec   (5673 perm/sec)   p_kst 6.489000e-01   p_cons 1.759000e-01   p_joint 3.912000e-01

Outputting figure to mutsig2_images.part000000000070/GJA10.4_1634_10000_0.6489_0.1759_0.3912.png
                gene_name: GJA10
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 45 percent done.
GJA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
Cons ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
KS ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
GJA9   10000 perm   2 sec   (5992 perm/sec)   p_kst 9.557000e-01   p_cons 4.348000e-01   p_joint 7.586000e-01

Outputting figure to mutsig2_images.part000000000070/GJA9.4_1552_10000_0.9557_0.4348_0.7586.png
                gene_name: GJA9
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 47 percent done.
GJB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
KS ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
GJB4   10000 perm   2 sec   (5712 perm/sec)   p_kst 7.828000e-01   p_cons 4.602000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GJB4.4_805_10000_0.7828_0.4602_1.png
                gene_name: GJB4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
GDI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
Cons ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
GDI1   10000 perm   2 sec   (5929 perm/sec)   p_kst 1.000000e-04   p_cons 9.597000e-01   p_joint 5.100000e-03

Joint ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
Cons ci ratio: 5.984607e-03	ci left: 9.525503e-01	ci right 9.583164e-01	k: 19110	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
GDI1   20000 perm   4 sec   (5238 perm/sec)   p_kst 3.000000e-04   p_cons 9.555000e-01   p_joint 6.500000e-04

Joint ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
Cons ci ratio: 4.726598e-03	ci left: 9.559081e-01	ci right 9.604693e-01	k: 28747	n:30000
KS ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
GDI1   30000 perm   6 sec   (5001 perm/sec)   p_kst 3.666667e-04   p_cons 9.582333e-01   p_joint 4.333333e-04

Joint ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
Cons ci ratio: 4.103650e-03	ci left: 9.560138e-01	ci right 9.599694e-01	k: 38321	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
GDI1   40000 perm   8 sec   (4818 perm/sec)   p_kst 4.500000e-04   p_cons 9.580250e-01   p_joint 5.250000e-04

Joint ci ratio: 3.356764e-01	ci left: 2.264246e-03	ci right 3.194984e-03	k: 135	n:50000
Cons ci ratio: 3.817633e-03	ci left: 9.528814e-01	ci right 9.565456e-01	k: 47737	n:50000
KS ci ratio: 8.171803e-01	ci left: 2.757655e-04	ci right 6.660900e-04	k: 22	n:50000
GDI1   50000 perm   11 sec   (4711 perm/sec)   p_kst 4.400000e-04   p_cons 9.547400e-01   p_joint 2.700000e-03

Joint ci ratio: 2.839337e-01	ci left: 2.717470e-03	ci right 3.631633e-03	k: 189	n:60000
Cons ci ratio: 3.479119e-03	ci left: 9.531921e-01	ci right 9.565304e-01	k: 57293	n:60000
KS ci ratio: 6.274931e-01	ci left: 4.482221e-04	ci right 8.691969e-04	k: 38	n:60000
GDI1   60000 perm   13 sec   (4618 perm/sec)   p_kst 6.333333e-04   p_cons 9.548833e-01   p_joint 3.150000e-03

Joint ci ratio: 2.638688e-01	ci left: 2.728437e-03	ci right 3.570726e-03	k: 219	n:70000
Cons ci ratio: 3.228880e-03	ci left: 9.531043e-01	ci right 9.562007e-01	k: 66827	n:70000
KS ci ratio: 5.777784e-01	ci left: 4.689419e-04	ci right 8.601000e-04	k: 45	n:70000
GDI1   70000 perm   15 sec   (4521 perm/sec)   p_kst 6.428571e-04   p_cons 9.546714e-01   p_joint 3.128571e-03

Joint ci ratio: 2.870922e-01	ci left: 1.991570e-03	ci right 2.670328e-03	k: 185	n:80000
Cons ci ratio: 3.018859e-03	ci left: 9.532488e-01	ci right 9.561431e-01	k: 76377	n:80000
KS ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
GDI1   80000 perm   18 sec   (4434 perm/sec)   p_kst 6.875000e-04   p_cons 9.547125e-01   p_joint 2.312500e-03

Joint ci ratio: 3.701726e-01	ci left: 1.014698e-03	ci right 1.485064e-03	k: 111	n:90000
Cons ci ratio: 2.846949e-03	ci left: 9.533098e-01	ci right 9.560386e-01	k: 85922	n:90000
KS ci ratio: 4.898230e-01	ci left: 5.379398e-04	ci right 8.955165e-04	k: 63	n:90000
GDI1   90000 perm   21 sec   (4350 perm/sec)   p_kst 7.000000e-04   p_cons 9.546889e-01   p_joint 1.233333e-03

Joint ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
Cons ci ratio: 2.711075e-03	ci left: 9.530482e-01	ci right 9.556453e-01	k: 95436	n:100000
KS ci ratio: 4.650509e-01	ci left: 5.457237e-04	ci right 8.843263e-04	k: 70	n:100000
GDI1   100000 perm   23 sec   (4275 perm/sec)   p_kst 7.000000e-04   p_cons 9.543600e-01   p_joint 9.500000e-04

Joint ci ratio: 3.958016e-01	ci left: 7.151515e-04	ci right 1.075639e-03	k: 97	n:110000
Cons ci ratio: 2.585589e-03	ci left: 9.530861e-01	ci right 9.555626e-01	k: 104977	n:110000
KS ci ratio: 4.275418e-01	ci left: 6.010347e-04	ci right 9.352880e-04	k: 83	n:110000
GDI1   110000 perm   26 sec   (4199 perm/sec)   p_kst 7.545455e-04   p_cons 9.543364e-01   p_joint 8.818182e-04

Joint ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
Cons ci ratio: 2.480784e-03	ci left: 9.529514e-01	ci right 9.553266e-01	k: 114498	n:120000
KS ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
GDI1   120000 perm   29 sec   (4128 perm/sec)   p_kst 7.333333e-04   p_cons 9.541500e-01   p_joint 8.583333e-04

Joint ci ratio: 3.637990e-01	ci left: 7.303943e-04	ci right 1.061753e-03	k: 115	n:130000
Cons ci ratio: 2.382713e-03	ci left: 9.530262e-01	ci right 9.553073e-01	k: 124043	n:130000
KS ci ratio: 3.958290e-01	ci left: 6.051209e-04	ci right 9.101697e-04	k: 97	n:130000
GDI1   130000 perm   32 sec   (4059 perm/sec)   p_kst 7.461538e-04   p_cons 9.541769e-01   p_joint 8.846154e-04

Joint ci ratio: 2.735832e-01	ci left: 1.264153e-03	ci right 1.671230e-03	k: 204	n:140000
Cons ci ratio: 2.208930e-03	ci left: 9.563724e-01	ci right 9.584943e-01	k: 134042	n:140000
KS ci ratio: 3.736091e-01	ci left: 6.393304e-04	ci right 9.391134e-04	k: 109	n:140000
GDI1   140000 perm   35 sec   (3995 perm/sec)   p_kst 7.785714e-04   p_cons 9.574429e-01   p_joint 1.457143e-03

Joint ci ratio: 2.605571e-01	ci left: 1.310512e-03	ci right 1.709155e-03	k: 225	n:150000
Cons ci ratio: 2.219777e-03	ci left: 9.530423e-01	ci right 9.551668e-01	k: 143117	n:150000
KS ci ratio: 3.518797e-01	ci left: 6.815451e-04	ci right 9.782986e-04	k: 123	n:150000
GDI1   150000 perm   38 sec   (3929 perm/sec)   p_kst 8.200000e-04   p_cons 9.541133e-01   p_joint 1.500000e-03

Joint ci ratio: 3.068807e-01	ci left: 8.626492e-04	ci right 1.180878e-03	k: 162	n:160000
Cons ci ratio: 2.145772e-03	ci left: 9.532211e-01	ci right 9.552749e-01	k: 152681	n:160000
KS ci ratio: 3.384935e-01	ci left: 6.960332e-04	ci right 9.850494e-04	k: 133	n:160000
GDI1   160000 perm   41 sec   (3872 perm/sec)   p_kst 8.312500e-04   p_cons 9.542563e-01   p_joint 1.012500e-03

Joint ci ratio: 2.978795e-01	ci left: 8.662674e-04	ci right 1.174687e-03	k: 172	n:170000
Cons ci ratio: 2.084020e-03	ci left: 9.531539e-01	ci right 9.551482e-01	k: 162207	n:170000
KS ci ratio: 3.299857e-01	ci left: 6.928113e-04	ci right 9.717249e-04	k: 140	n:170000
GDI1   170000 perm   45 sec   (3815 perm/sec)   p_kst 8.235294e-04   p_cons 9.541588e-01   p_joint 1.011765e-03

Joint ci ratio: 2.904220e-01	ci left: 8.644527e-04	ci right 1.163105e-03	k: 181	n:180000
Cons ci ratio: 2.024987e-03	ci left: 9.531961e-01	ci right 9.551337e-01	k: 171751	n:180000
KS ci ratio: 3.210051e-01	ci left: 6.951357e-04	ci right 9.658030e-04	k: 148	n:180000
GDI1   180000 perm   48 sec   (3762 perm/sec)   p_kst 8.222222e-04   p_cons 9.541722e-01   p_joint 1.005556e-03

Joint ci ratio: 2.849954e-01	ci left: 8.531383e-04	ci right 1.141383e-03	k: 188	n:190000
Cons ci ratio: 1.975798e-03	ci left: 9.530060e-01	ci right 9.548959e-01	k: 181252	n:190000
KS ci ratio: 3.178259e-01	ci left: 6.730720e-04	ci right 9.320246e-04	k: 151	n:190000
GDI1   190000 perm   51 sec   (3706 perm/sec)   p_kst 7.947368e-04   p_cons 9.539579e-01   p_joint 9.894737e-04

Joint ci ratio: 2.438905e-01	ci left: 1.132768e-03	ci right 1.451968e-03	k: 257	n:200000
Cons ci ratio: 1.927800e-03	ci left: 9.529365e-01	ci right 9.547803e-01	k: 190773	n:200000
KS ci ratio: 3.221020e-01	ci left: 6.210216e-04	ci right 8.638272e-04	k: 147	n:200000
GDI1   200000 perm   55 sec   (3654 perm/sec)   p_kst 7.350000e-04   p_cons 9.538650e-01   p_joint 1.285000e-03

Joint ci ratio: 2.672043e-01	ci left: 8.871363e-04	ci right 1.165028e-03	k: 214	n:210000
Cons ci ratio: 1.883641e-03	ci left: 9.528503e-01	ci right 9.546515e-01	k: 200289	n:210000
KS ci ratio: 3.178381e-01	ci left: 6.089665e-04	ci right 8.432658e-04	k: 151	n:210000
GDI1   210000 perm   58 sec   (3606 perm/sec)   p_kst 7.190476e-04   p_cons 9.537571e-01   p_joint 1.019048e-03

Joint ci ratio: 2.617821e-01	ci left: 8.850088e-04	ci right 1.155688e-03	k: 223	n:220000
Cons ci ratio: 1.840763e-03	ci left: 9.528503e-01	ci right 9.546104e-01	k: 209822	n:220000
KS ci ratio: 3.107632e-01	ci left: 6.105952e-04	ci right 8.392551e-04	k: 158	n:220000
GDI1   220000 perm   62 sec   (3557 perm/sec)   p_kst 7.181818e-04   p_cons 9.537364e-01   p_joint 1.013636e-03

Joint ci ratio: 2.566771e-01	ci left: 8.831182e-04	ci right 1.147108e-03	k: 232	n:230000
Cons ci ratio: 1.802547e-03	ci left: 9.527587e-01	ci right 9.544820e-01	k: 219334	n:230000
KS ci ratio: 3.032279e-01	ci left: 6.161517e-04	ci right 8.402188e-04	k: 166	n:230000
GDI1   230000 perm   66 sec   (3510 perm/sec)   p_kst 7.217391e-04   p_cons 9.536261e-01   p_joint 1.008696e-03

Joint ci ratio: 2.523821e-01	ci left: 8.775283e-04	ci right 1.134768e-03	k: 240	n:240000
Cons ci ratio: 1.766524e-03	ci left: 9.526794e-01	ci right 9.543679e-01	k: 228847	n:240000
KS ci ratio: 3.050660e-01	ci left: 5.827796e-04	ci right 7.962449e-04	k: 164	n:240000
GDI1   240000 perm   69 sec   (3461 perm/sec)   p_kst 6.833333e-04   p_cons 9.535292e-01   p_joint 1.000000e-03

Joint ci ratio: 2.176362e-01	ci left: 1.155003e-03	ci right 1.440760e-03	k: 323	n:250000
Cons ci ratio: 1.731087e-03	ci left: 9.526835e-01	ci right 9.543380e-01	k: 238379	n:250000
KS ci ratio: 2.962198e-01	ci left: 5.964528e-04	ci right 8.074017e-04	k: 174	n:250000
GDI1   250000 perm   73 sec   (3413 perm/sec)   p_kst 6.960000e-04   p_cons 9.535160e-01   p_joint 1.292000e-03

Joint ci ratio: 2.121402e-01	ci left: 1.172448e-03	ci right 1.454242e-03	k: 340	n:260000
Cons ci ratio: 1.699836e-03	ci left: 9.525751e-01	ci right 9.541994e-01	k: 247882	n:260000
KS ci ratio: 2.873250e-01	ci left: 6.127253e-04	ci right 8.217414e-04	k: 185	n:260000
GDI1   260000 perm   77 sec   (3370 perm/sec)   p_kst 7.115385e-04   p_cons 9.533923e-01   p_joint 1.307692e-03

Joint ci ratio: 2.333102e-01	ci left: 9.226535e-04	ci right 1.169740e-03	k: 281	n:270000
Cons ci ratio: 1.669512e-03	ci left: 9.525123e-01	ci right 9.541075e-01	k: 257395	n:270000
KS ci ratio: 2.798978e-01	ci left: 6.244357e-04	ci right 8.309697e-04	k: 195	n:270000
GDI1   270000 perm   81 sec   (3326 perm/sec)   p_kst 7.222222e-04   p_cons 9.533148e-01   p_joint 1.040741e-03

Joint ci ratio: 2.288886e-01	ci left: 9.267133e-04	ci right 1.169519e-03	k: 292	n:280000
Cons ci ratio: 1.638976e-03	ci left: 9.525516e-01	ci right 9.541176e-01	k: 266935	n:280000
KS ci ratio: 2.750298e-01	ci left: 6.253953e-04	ci right 8.280271e-04	k: 202	n:280000
GDI1   280000 perm   85 sec   (3281 perm/sec)   p_kst 7.214286e-04   p_cons 9.533393e-01   p_joint 1.042857e-03

Joint ci ratio: 2.236074e-01	ci left: 9.402986e-04	ci right 1.180197e-03	k: 306	n:290000
Cons ci ratio: 1.608556e-03	ci left: 9.526718e-01	ci right 9.542088e-01	k: 276499	n:290000
KS ci ratio: 2.691278e-01	ci left: 6.327480e-04	ci right 8.326202e-04	k: 211	n:290000
GDI1   290000 perm   90 sec   (3240 perm/sec)   p_kst 7.275862e-04   p_cons 9.534448e-01   p_joint 1.055172e-03

Joint ci ratio: 2.589416e-01	ci left: 6.645754e-04	ci right 8.652716e-04	k: 228	n:300000
Cons ci ratio: 1.581070e-03	ci left: 9.527102e-01	ci right 9.542210e-01	k: 286041	n:300000
KS ci ratio: 2.641890e-01	ci left: 6.365408e-04	ci right 8.333110e-04	k: 219	n:300000
GDI1   300000 perm   94 sec   (3199 perm/sec)   p_kst 7.300000e-04   p_cons 9.534700e-01   p_joint 7.600000e-04

Joint ci ratio: 2.534655e-01	ci left: 6.733248e-04	ci right 8.716839e-04	k: 238	n:310000
Cons ci ratio: 1.557432e-03	ci left: 9.526034e-01	ci right 9.540913e-01	k: 295539	n:310000
KS ci ratio: 2.583808e-01	ci left: 6.461533e-04	ci right 8.407953e-04	k: 229	n:310000
GDI1   310000 perm   98 sec   (3161 perm/sec)   p_kst 7.387097e-04   p_cons 9.533516e-01   p_joint 7.677419e-04

Joint ci ratio: 2.513722e-01	ci left: 6.639922e-04	ci right 8.577335e-04	k: 242	n:320000
Cons ci ratio: 1.532985e-03	ci left: 9.526105e-01	ci right 9.540750e-01	k: 305071	n:320000
KS ci ratio: 2.513722e-01	ci left: 6.639922e-04	ci right 8.577335e-04	k: 242	n:320000
GDI1   320000 perm   102 sec   (3125 perm/sec)   p_kst 7.562500e-04   p_cons 9.533469e-01   p_joint 7.562500e-04

Joint ci ratio: 2.478283e-01	ci left: 6.637566e-04	ci right 8.542779e-04	k: 249	n:330000
Cons ci ratio: 1.511041e-03	ci left: 9.525349e-01	ci right 9.539783e-01	k: 314576	n:330000
KS ci ratio: 2.478283e-01	ci left: 6.637566e-04	ci right 8.542779e-04	k: 249	n:330000
GDI1   330000 perm   107 sec   (3084 perm/sec)   p_kst 7.545455e-04   p_cons 9.532606e-01   p_joint 7.545455e-04

Joint ci ratio: 2.444301e-01	ci left: 6.635528e-04	ci right 8.510076e-04	k: 256	n:340000
Cons ci ratio: 1.489370e-03	ci left: 9.525025e-01	ci right 9.539251e-01	k: 324094	n:340000
KS ci ratio: 2.444301e-01	ci left: 6.635528e-04	ci right 8.510076e-04	k: 256	n:340000
GDI1   340000 perm   112 sec   (3047 perm/sec)   p_kst 7.529412e-04   p_cons 9.532176e-01   p_joint 7.529412e-04

Joint ci ratio: 2.420874e-01	ci left: 6.580089e-04	ci right 8.418483e-04	k: 261	n:350000
Cons ci ratio: 1.467853e-03	ci left: 9.525181e-01	ci right 9.539201e-01	k: 333628	n:350000
KS ci ratio: 2.420874e-01	ci left: 6.580089e-04	ci right 8.418483e-04	k: 261	n:350000
GDI1   350000 perm   116 sec   (3011 perm/sec)   p_kst 7.457143e-04   p_cons 9.532229e-01   p_joint 7.457143e-04

Joint ci ratio: 2.398108e-01	ci left: 6.527811e-04	ci right 8.331897e-04	k: 266	n:360000
Cons ci ratio: 1.448233e-03	ci left: 9.524714e-01	ci right 9.538546e-01	k: 343140	n:360000
KS ci ratio: 2.398108e-01	ci left: 6.527811e-04	ci right 8.331897e-04	k: 266	n:360000
GDI1   360000 perm   121 sec   (2977 perm/sec)   p_kst 7.388889e-04   p_cons 9.531667e-01   p_joint 7.388889e-04

Joint ci ratio: 2.371613e-01	ci left: 6.503855e-04	ci right 8.278546e-04	k: 272	n:370000
Cons ci ratio: 1.429464e-03	ci left: 9.524220e-01	ci right 9.537871e-01	k: 352650	n:370000
KS ci ratio: 2.371613e-01	ci left: 6.503855e-04	ci right 8.278546e-04	k: 272	n:370000
GDI1   370000 perm   126 sec   (2942 perm/sec)   p_kst 7.351351e-04   p_cons 9.531081e-01   p_joint 7.351351e-04

Joint ci ratio: 2.329327e-01	ci left: 6.580367e-04	ci right 8.339311e-04	k: 282	n:380000
Cons ci ratio: 1.409951e-03	ci left: 9.524680e-01	ci right 9.538145e-01	k: 362195	n:380000
KS ci ratio: 2.329327e-01	ci left: 6.580367e-04	ci right 8.339311e-04	k: 282	n:380000
GDI1   380000 perm   131 sec   (2903 perm/sec)   p_kst 7.421053e-04   p_cons 9.531447e-01   p_joint 7.421053e-04

Joint ci ratio: 2.305025e-01	ci left: 6.556554e-04	ci right 8.288246e-04	k: 288	n:390000
Cons ci ratio: 1.391494e-03	ci left: 9.524937e-01	ci right 9.538226e-01	k: 371733	n:390000
KS ci ratio: 2.305025e-01	ci left: 6.556554e-04	ci right 8.288246e-04	k: 288	n:390000
GDI1   390000 perm   136 sec   (2873 perm/sec)   p_kst 7.384615e-04   p_cons 9.531615e-01   p_joint 7.384615e-04

Joint ci ratio: 2.285347e-01	ci left: 6.510452e-04	ci right 8.213217e-04	k: 293	n:400000
Cons ci ratio: 1.374475e-03	ci left: 9.524705e-01	ci right 9.537830e-01	k: 381252	n:400000
KS ci ratio: 2.285347e-01	ci left: 6.510452e-04	ci right 8.213217e-04	k: 293	n:400000
GDI1   400000 perm   141 sec   (2844 perm/sec)   p_kst 7.325000e-04   p_cons 9.531300e-01   p_joint 7.325000e-04

Joint ci ratio: 2.254873e-01	ci left: 6.535688e-04	ci right 8.219092e-04	k: 301	n:410000
Cons ci ratio: 1.356508e-03	ci left: 9.525515e-01	ci right 9.538469e-01	k: 390813	n:410000
KS ci ratio: 2.254873e-01	ci left: 6.535688e-04	ci right 8.219092e-04	k: 301	n:410000
GDI1   410000 perm   146 sec   (2817 perm/sec)   p_kst 7.341463e-04   p_cons 9.532024e-01   p_joint 7.341463e-04

Joint ci ratio: 2.229187e-01	ci left: 6.537383e-04	ci right 8.199411e-04	k: 308	n:420000
Cons ci ratio: 1.339976e-03	ci left: 9.525785e-01	ci right 9.538581e-01	k: 400353	n:420000
KS ci ratio: 2.229187e-01	ci left: 6.537383e-04	ci right 8.199411e-04	k: 308	n:420000
GDI1   420000 perm   151 sec   (2790 perm/sec)   p_kst 7.333333e-04   p_cons 9.532214e-01   p_joint 7.333333e-04

Joint ci ratio: 2.197411e-01	ci left: 6.583053e-04	ci right 8.229611e-04	k: 317	n:430000
Cons ci ratio: 1.324793e-03	ci left: 9.525528e-01	ci right 9.538178e-01	k: 409871	n:430000
KS ci ratio: 2.197411e-01	ci left: 6.583053e-04	ci right 8.229611e-04	k: 317	n:430000
GDI1   430000 perm   156 sec   (2763 perm/sec)   p_kst 7.372093e-04   p_cons 9.531884e-01   p_joint 7.372093e-04

Joint ci ratio: 2.137716e-01	ci left: 6.820334e-04	ci right 8.473824e-04	k: 335	n:440000
Cons ci ratio: 1.310015e-03	ci left: 9.525352e-01	ci right 9.537861e-01	k: 419392	n:440000
KS ci ratio: 2.173619e-01	ci left: 6.583821e-04	ci right 8.210360e-04	k: 324	n:440000
GDI1   440000 perm   161 sec   (2737 perm/sec)   p_kst 7.363636e-04   p_cons 9.531636e-01   p_joint 7.613636e-04

Joint ci ratio: 2.109646e-01	ci left: 6.858136e-04	ci right 8.496136e-04	k: 344	n:450000
Cons ci ratio: 1.294171e-03	ci left: 9.526258e-01	ci right 9.538617e-01	k: 428961	n:450000
KS ci ratio: 2.144130e-01	ci left: 6.626702e-04	ci right 8.238703e-04	k: 333	n:450000
GDI1   450000 perm   166 sec   (2710 perm/sec)   p_kst 7.400000e-04   p_cons 9.532467e-01   p_joint 7.644444e-04

Joint ci ratio: 2.079715e-01	ci left: 6.915036e-04	ci right 8.540213e-04	k: 354	n:460000
Cons ci ratio: 1.279292e-03	ci left: 9.526841e-01	ci right 9.539058e-01	k: 438517	n:460000
KS ci ratio: 2.115809e-01	ci left: 6.667861e-04	ci right 8.265672e-04	k: 342	n:460000
GDI1   460000 perm   171 sec   (2684 perm/sec)   p_kst 7.434783e-04   p_cons 9.532978e-01   p_joint 7.695652e-04

Joint ci ratio: 2.053840e-01	ci left: 6.949488e-04	ci right 8.559890e-04	k: 363	n:470000
Cons ci ratio: 1.265578e-03	ci left: 9.526929e-01	ci right 9.539015e-01	k: 448051	n:470000
KS ci ratio: 2.088582e-01	ci left: 6.707402e-04	ci right 8.291360e-04	k: 351	n:470000
GDI1   470000 perm   177 sec   (2658 perm/sec)   p_kst 7.468085e-04   p_cons 9.533000e-01   p_joint 7.723404e-04

Joint ci ratio: 2.039884e-01	ci left: 6.903533e-04	ci right 8.491060e-04	k: 368	n:480000
Cons ci ratio: 1.252793e-03	ci left: 9.526658e-01	ci right 9.538621e-01	k: 457568	n:480000
KS ci ratio: 2.073910e-01	ci left: 6.666400e-04	ci right 8.228214e-04	k: 356	n:480000
GDI1   480000 perm   182 sec   (2633 perm/sec)   p_kst 7.416667e-04   p_cons 9.532667e-01   p_joint 7.666667e-04

Joint ci ratio: 2.020808e-01	ci left: 6.898239e-04	ci right 8.467884e-04	k: 375	n:490000
Cons ci ratio: 1.240814e-03	ci left: 9.526090e-01	ci right 9.537938e-01	k: 467070	n:490000
KS ci ratio: 2.053873e-01	ci left: 6.665826e-04	ci right 8.210521e-04	k: 363	n:490000
GDI1   490000 perm   188 sec   (2608 perm/sec)   p_kst 7.408163e-04   p_cons 9.532041e-01   p_joint 7.653061e-04

Joint ci ratio: 1.997046e-01	ci left: 6.931222e-04	ci right 8.487567e-04	k: 384	n:500000
Cons ci ratio: 1.228069e-03	ci left: 9.526351e-01	ci right 9.538077e-01	k: 476612	n:500000
KS ci ratio: 2.028940e-01	ci left: 6.703310e-04	ci right 8.235497e-04	k: 372	n:500000
GDI1   500000 perm   194 sec   (2583 perm/sec)   p_kst 7.440000e-04   p_cons 9.532240e-01   p_joint 7.680000e-04

Joint ci ratio: 1.981667e-01	ci left: 6.907102e-04	ci right 8.444645e-04	k: 390	n:510000
Cons ci ratio: 1.215387e-03	ci left: 9.526838e-01	ci right 9.538443e-01	k: 486166	n:510000
KS ci ratio: 2.012818e-01	ci left: 6.683565e-04	ci right 8.197610e-04	k: 378	n:510000
GDI1   510000 perm   199 sec   (2558 perm/sec)   p_kst 7.411765e-04   p_cons 9.532667e-01   p_joint 7.647059e-04

Joint ci ratio: 1.959244e-01	ci left: 6.938812e-04	ci right 8.463851e-04	k: 399	n:520000
Cons ci ratio: 1.203972e-03	ci left: 9.526650e-01	ci right 9.538146e-01	k: 495686	n:520000
KS ci ratio: 1.991904e-01	ci left: 6.701169e-04	ci right 8.201513e-04	k: 386	n:520000
GDI1   520000 perm   205 sec   (2533 perm/sec)   p_kst 7.423077e-04   p_cons 9.532423e-01   p_joint 7.673077e-04

Joint ci ratio: 1.939940e-01	ci left: 6.951468e-04	ci right 8.462457e-04	k: 407	n:530000
Cons ci ratio: 1.192671e-03	ci left: 9.526621e-01	ci right 9.538009e-01	k: 505214	n:530000
KS ci ratio: 1.971629e-01	ci left: 6.718186e-04	ci right 8.205190e-04	k: 394	n:530000
GDI1   530000 perm   212 sec   (2504 perm/sec)   p_kst 7.433962e-04   p_cons 9.532340e-01   p_joint 7.679245e-04

Joint ci ratio: 1.928166e-01	ci left: 6.910845e-04	ci right 8.402818e-04	k: 412	n:540000
Cons ci ratio: 1.181486e-03	ci left: 9.526743e-01	ci right 9.538023e-01	k: 514750	n:540000
KS ci ratio: 1.964192e-01	ci left: 6.646591e-04	ci right 8.111535e-04	k: 397	n:540000
GDI1   540000 perm   218 sec   (2477 perm/sec)   p_kst 7.351852e-04   p_cons 9.532407e-01   p_joint 7.629630e-04

Joint ci ratio: 1.907492e-01	ci left: 6.940974e-04	ci right 8.421522e-04	k: 421	n:550000
Cons ci ratio: 1.171135e-03	ci left: 9.526458e-01	ci right 9.537639e-01	k: 524264	n:550000
KS ci ratio: 1.944743e-01	ci left: 6.664082e-04	ci right 8.116615e-04	k: 405	n:550000
GDI1   550000 perm   224 sec   (2454 perm/sec)   p_kst 7.363636e-04   p_cons 9.532073e-01   p_joint 7.654545e-04

Joint ci ratio: 1.885282e-01	ci left: 6.987123e-04	ci right 8.458174e-04	k: 431	n:560000
Cons ci ratio: 1.160935e-03	ci left: 9.526274e-01	ci right 9.537357e-01	k: 533783	n:560000
KS ci ratio: 1.921222e-01	ci left: 6.715012e-04	ci right 8.158876e-04	k: 415	n:560000
GDI1   560000 perm   230 sec   (2431 perm/sec)   p_kst 7.410714e-04   p_cons 9.531839e-01   p_joint 7.696429e-04

Joint ci ratio: 1.874470e-01	ci left: 6.948132e-04	ci right 8.401630e-04	k: 436	n:570000
Cons ci ratio: 1.150815e-03	ci left: 9.526238e-01	ci right 9.537225e-01	k: 543310	n:570000
KS ci ratio: 1.909784e-01	ci left: 6.680716e-04	ci right 8.107660e-04	k: 420	n:570000
GDI1   570000 perm   237 sec   (2410 perm/sec)   p_kst 7.368421e-04   p_cons 9.531754e-01   p_joint 7.649123e-04

Joint ci ratio: 1.853380e-01	ci left: 6.992707e-04	ci right 8.437222e-04	k: 446	n:580000
Cons ci ratio: 1.140140e-03	ci left: 9.526845e-01	ci right 9.537730e-01	k: 552874	n:580000
KS ci ratio: 1.894103e-01	ci left: 6.680475e-04	ci right 8.094302e-04	k: 427	n:580000
GDI1   580000 perm   243 sec   (2389 perm/sec)   p_kst 7.362069e-04   p_cons 9.532310e-01   p_joint 7.689655e-04

Joint ci ratio: 1.841068e-01	ci left: 6.971178e-04	ci right 8.400611e-04	k: 452	n:590000
Cons ci ratio: 1.130508e-03	ci left: 9.526836e-01	ci right 9.537628e-01	k: 562403	n:590000
KS ci ratio: 1.880966e-01	ci left: 6.664135e-04	ci right 8.063606e-04	k: 433	n:590000
GDI1   590000 perm   249 sec   (2369 perm/sec)   p_kst 7.338983e-04   p_cons 9.532254e-01   p_joint 7.661017e-04

Joint ci ratio: 1.855482e-01	ci left: 6.743716e-04	ci right 8.138552e-04	k: 445	n:600000
Cons ci ratio: 1.120319e-03	ci left: 9.527463e-01	ci right 9.538160e-01	k: 571970	n:600000
KS ci ratio: 1.855482e-01	ci left: 6.743716e-04	ci right 8.138552e-04	k: 445	n:600000
GDI1   600000 perm   255 sec   (2349 perm/sec)   p_kst 7.416667e-04   p_cons 9.532833e-01   p_joint 7.416667e-04

Joint ci ratio: 1.839061e-01	ci left: 6.758247e-04	ci right 8.142338e-04	k: 453	n:610000
Cons ci ratio: 1.111565e-03	ci left: 9.527131e-01	ci right 9.537743e-01	k: 581480	n:610000
KS ci ratio: 1.839061e-01	ci left: 6.758247e-04	ci right 8.142338e-04	k: 453	n:610000
GDI1   610000 perm   262 sec   (2329 perm/sec)   p_kst 7.426230e-04   p_cons 9.532459e-01   p_joint 7.426230e-04

Joint ci ratio: 1.825046e-01	ci left: 6.756968e-04	ci right 8.129086e-04	k: 460	n:620000
Cons ci ratio: 1.103012e-03	ci left: 9.526811e-01	ci right 9.537340e-01	k: 590990	n:620000
KS ci ratio: 1.825046e-01	ci left: 6.756968e-04	ci right 8.129086e-04	k: 460	n:620000
GDI1   620000 perm   269 sec   (2308 perm/sec)   p_kst 7.419355e-04   p_cons 9.532097e-01   p_joint 7.419355e-04

Joint ci ratio: 1.809413e-01	ci left: 6.770923e-04	ci right 8.132806e-04	k: 468	n:630000
Cons ci ratio: 1.094711e-03	ci left: 9.526453e-01	ci right 9.536903e-01	k: 600497	n:630000
KS ci ratio: 1.809413e-01	ci left: 6.770923e-04	ci right 8.132806e-04	k: 468	n:630000
GDI1   630000 perm   275 sec   (2288 perm/sec)   p_kst 7.428571e-04   p_cons 9.531698e-01   p_joint 7.428571e-04

Joint ci ratio: 1.794174e-01	ci left: 6.784490e-04	ci right 8.136362e-04	k: 476	n:640000
Cons ci ratio: 1.086347e-03	ci left: 9.526310e-01	ci right 9.536680e-01	k: 610017	n:640000
KS ci ratio: 1.794174e-01	ci left: 6.784490e-04	ci right 8.136362e-04	k: 476	n:640000
GDI1   640000 perm   282 sec   (2268 perm/sec)   p_kst 7.437500e-04   p_cons 9.531516e-01   p_joint 7.437500e-04

Joint ci ratio: 1.775655e-01	ci left: 6.827088e-04	ci right 8.171898e-04	k: 486	n:650000
Cons ci ratio: 1.078079e-03	ci left: 9.526250e-01	ci right 9.536541e-01	k: 619542	n:650000
KS ci ratio: 1.775655e-01	ci left: 6.827088e-04	ci right 8.171898e-04	k: 486	n:650000
GDI1   650000 perm   289 sec   (2249 perm/sec)   p_kst 7.476923e-04   p_cons 9.531415e-01   p_joint 7.476923e-04

Joint ci ratio: 1.763030e-01	ci left: 6.825010e-04	ci right 8.158835e-04	k: 493	n:660000
Cons ci ratio: 1.069815e-03	ci left: 9.526344e-01	ci right 9.536556e-01	k: 629077	n:660000
KS ci ratio: 1.763030e-01	ci left: 6.825010e-04	ci right 8.158835e-04	k: 493	n:660000
GDI1   660000 perm   296 sec   (2231 perm/sec)   p_kst 7.469697e-04   p_cons 9.531470e-01   p_joint 7.469697e-04

Joint ci ratio: 1.750671e-01	ci left: 6.823028e-04	ci right 8.146128e-04	k: 500	n:670000
Cons ci ratio: 1.062022e-03	ci left: 9.526195e-01	ci right 9.536333e-01	k: 638596	n:670000
KS ci ratio: 1.750671e-01	ci left: 6.823028e-04	ci right 8.146128e-04	k: 500	n:670000
GDI1   670000 perm   303 sec   (2213 perm/sec)   p_kst 7.462687e-04   p_cons 9.531284e-01   p_joint 7.462687e-04

Joint ci ratio: 1.731758e-01	ci left: 6.877406e-04	ci right 8.195138e-04	k: 511	n:680000
Cons ci ratio: 1.053599e-03	ci left: 9.526732e-01	ci right 9.536789e-01	k: 648161	n:680000
KS ci ratio: 1.731758e-01	ci left: 6.877406e-04	ci right 8.195138e-04	k: 511	n:680000
GDI1   680000 perm   310 sec   (2194 perm/sec)   p_kst 7.514706e-04   p_cons 9.531779e-01   p_joint 7.514706e-04

Joint ci ratio: 1.720041e-01	ci left: 6.874800e-04	ci right 8.182195e-04	k: 518	n:690000
Cons ci ratio: 1.045610e-03	ci left: 9.527048e-01	ci right 9.537029e-01	k: 657712	n:690000
KS ci ratio: 1.720041e-01	ci left: 6.874800e-04	ci right 8.182195e-04	k: 518	n:690000
GDI1   690000 perm   317 sec   (2175 perm/sec)   p_kst 7.507246e-04   p_cons 9.532058e-01   p_joint 7.507246e-04

Joint ci ratio: 1.713455e-01	ci left: 6.831275e-04	ci right 8.124904e-04	k: 522	n:700000
Cons ci ratio: 1.037533e-03	ci left: 9.527586e-01	ci right 9.537491e-01	k: 667279	n:700000
KS ci ratio: 1.713455e-01	ci left: 6.831275e-04	ci right 8.124904e-04	k: 522	n:700000
GDI1   700000 perm   324 sec   (2158 perm/sec)   p_kst 7.457143e-04   p_cons 9.532557e-01   p_joint 7.457143e-04

Joint ci ratio: 1.703712e-01	ci left: 6.815953e-04	ci right 8.098587e-04	k: 528	n:710000
Cons ci ratio: 1.029656e-03	ci left: 9.528095e-01	ci right 9.537924e-01	k: 676845	n:710000
KS ci ratio: 1.703712e-01	ci left: 6.815953e-04	ci right 8.098587e-04	k: 528	n:710000
GDI1   710000 perm   332 sec   (2140 perm/sec)   p_kst 7.436620e-04   p_cons 9.533028e-01   p_joint 7.436620e-04

Joint ci ratio: 1.695720e-01	ci left: 6.787776e-04	ci right 8.058504e-04	k: 533	n:720000
Cons ci ratio: 1.021827e-03	ci left: 9.528701e-01	ci right 9.538457e-01	k: 686419	n:720000
KS ci ratio: 1.695720e-01	ci left: 6.787776e-04	ci right 8.058504e-04	k: 533	n:720000
GDI1   720000 perm   339 sec   (2123 perm/sec)   p_kst 7.402778e-04   p_cons 9.533597e-01   p_joint 7.402778e-04

Joint ci ratio: 1.689408e-01	ci left: 6.747265e-04	ci right 8.005228e-04	k: 537	n:730000
Cons ci ratio: 1.015032e-03	ci left: 9.528534e-01	ci right 9.538224e-01	k: 695938	n:730000
KS ci ratio: 1.689408e-01	ci left: 6.747265e-04	ci right 8.005228e-04	k: 537	n:730000
GDI1   730000 perm   347 sec   (2106 perm/sec)   p_kst 7.356164e-04   p_cons 9.533397e-01   p_joint 7.356164e-04

Joint ci ratio: 1.681615e-01	ci left: 6.720802e-04	ci right 7.967466e-04	k: 542	n:740000
Cons ci ratio: 1.008125e-03	ci left: 9.528589e-01	ci right 9.538213e-01	k: 705473	n:740000
KS ci ratio: 1.681615e-01	ci left: 6.720802e-04	ci right 7.967466e-04	k: 542	n:740000
GDI1   740000 perm   354 sec   (2088 perm/sec)   p_kst 7.324324e-04   p_cons 9.533419e-01   p_joint 7.324324e-04

Joint ci ratio: 1.672402e-01	ci left: 6.707834e-04	ci right 7.944588e-04	k: 548	n:750000
Cons ci ratio: 1.002168e-03	ci left: 9.527919e-01	ci right 9.537486e-01	k: 714954	n:750000
KS ci ratio: 1.672402e-01	ci left: 6.707834e-04	ci right 7.944588e-04	k: 548	n:750000
GDI1   750000 perm   362 sec   (2071 perm/sec)   p_kst 7.306667e-04   p_cons 9.532720e-01   p_joint 7.306667e-04

Joint ci ratio: 1.661841e-01	ci left: 6.707835e-04	ci right 7.935999e-04	k: 555	n:760000
Cons ci ratio: 9.954901e-04	ci left: 9.528008e-01	ci right 9.537510e-01	k: 724491	n:760000
KS ci ratio: 1.661841e-01	ci left: 6.707835e-04	ci right 7.935999e-04	k: 555	n:760000
GDI1   760000 perm   370 sec   (2055 perm/sec)   p_kst 7.302632e-04   p_cons 9.532776e-01   p_joint 7.302632e-04

Joint ci ratio: 1.647092e-01	ci left: 6.745214e-04	ci right 7.968175e-04	k: 565	n:770000
Cons ci ratio: 9.893618e-04	ci left: 9.527716e-01	ci right 9.537159e-01	k: 733999	n:770000
KS ci ratio: 1.647092e-01	ci left: 6.745214e-04	ci right 7.968175e-04	k: 565	n:770000
GDI1   770000 perm   378 sec   (2039 perm/sec)   p_kst 7.337662e-04   p_cons 9.532455e-01   p_joint 7.337662e-04

Joint ci ratio: 1.631313e-01	ci left: 6.793979e-04	ci right 8.012823e-04	k: 576	n:780000
Cons ci ratio: 9.827793e-04	ci left: 9.527946e-01	ci right 9.537328e-01	k: 743547	n:780000
KS ci ratio: 1.631313e-01	ci left: 6.793979e-04	ci right 8.012823e-04	k: 576	n:780000
GDI1   780000 perm   385 sec   (2024 perm/sec)   p_kst 7.384615e-04   p_cons 9.532654e-01   p_joint 7.384615e-04

Joint ci ratio: 1.625691e-01	ci left: 6.756548e-04	ci right 7.964091e-04	k: 580	n:790000
Cons ci ratio: 9.768396e-04	ci left: 9.527701e-01	ci right 9.537025e-01	k: 753058	n:790000
KS ci ratio: 1.625691e-01	ci left: 6.756548e-04	ci right 7.964091e-04	k: 580	n:790000
GDI1   790000 perm   393 sec   (2010 perm/sec)   p_kst 7.341772e-04   p_cons 9.532380e-01   p_joint 7.341772e-04

Joint ci ratio: 1.615986e-01	ci left: 6.756042e-04	ci right 7.955586e-04	k: 587	n:800000
Cons ci ratio: 9.709652e-04	ci left: 9.527500e-01	ci right 9.536767e-01	k: 762572	n:800000
KS ci ratio: 1.615986e-01	ci left: 6.756042e-04	ci right 7.955586e-04	k: 587	n:800000
GDI1   800000 perm   401 sec   (1996 perm/sec)   p_kst 7.337500e-04   p_cons 9.532150e-01   p_joint 7.337500e-04

Joint ci ratio: 1.605103e-01	ci left: 6.767419e-04	ci right 7.960111e-04	k: 595	n:810000
Cons ci ratio: 9.648747e-04	ci left: 9.527601e-01	ci right 9.536811e-01	k: 772110	n:810000
KS ci ratio: 1.605103e-01	ci left: 6.767419e-04	ci right 7.960111e-04	k: 595	n:810000
GDI1   810000 perm   409 sec   (1981 perm/sec)   p_kst 7.345679e-04   p_cons 9.532222e-01   p_joint 7.345679e-04

Joint ci ratio: 1.597085e-01	ci left: 6.755128e-04	ci right 7.939137e-04	k: 601	n:820000
Cons ci ratio: 9.589236e-04	ci left: 9.527676e-01	ci right 9.536829e-01	k: 781646	n:820000
KS ci ratio: 1.597085e-01	ci left: 6.755128e-04	ci right 7.939137e-04	k: 601	n:820000
GDI1   820000 perm   417 sec   (1966 perm/sec)   p_kst 7.329268e-04   p_cons 9.532268e-01   p_joint 7.329268e-04

Joint ci ratio: 1.590496e-01	ci left: 6.731579e-04	ci right 7.906127e-04	k: 606	n:830000
Cons ci ratio: 9.526949e-04	ci left: 9.528112e-01	ci right 9.537206e-01	k: 791212	n:830000
KS ci ratio: 1.590496e-01	ci left: 6.731579e-04	ci right 7.906127e-04	k: 606	n:830000
GDI1   830000 perm   425 sec   (1951 perm/sec)   p_kst 7.301205e-04   p_cons 9.532675e-01   p_joint 7.301205e-04

Joint ci ratio: 1.577552e-01	ci left: 6.765771e-04	ci right 7.935768e-04	k: 616	n:840000
Cons ci ratio: 9.465852e-04	ci left: 9.528538e-01	ci right 9.537574e-01	k: 800778	n:840000
KS ci ratio: 1.577552e-01	ci left: 6.765771e-04	ci right 7.935768e-04	k: 616	n:840000
GDI1   840000 perm   434 sec   (1937 perm/sec)   p_kst 7.333333e-04   p_cons 9.533071e-01   p_joint 7.333333e-04

Joint ci ratio: 1.566169e-01	ci left: 6.787892e-04	ci right 7.952449e-04	k: 625	n:850000
Cons ci ratio: 9.409765e-04	ci left: 9.528588e-01	ci right 9.537570e-01	k: 810313	n:850000
KS ci ratio: 1.566169e-01	ci left: 6.787892e-04	ci right 7.952449e-04	k: 625	n:850000
GDI1   850000 perm   442 sec   (1923 perm/sec)   p_kst 7.352941e-04   p_cons 9.533094e-01   p_joint 7.352941e-04

Joint ci ratio: 1.559954e-01	ci left: 6.764828e-04	ci right 7.920391e-04	k: 630	n:860000
Cons ci ratio: 9.355396e-04	ci left: 9.528566e-01	ci right 9.537496e-01	k: 819842	n:860000
KS ci ratio: 1.559954e-01	ci left: 6.764828e-04	ci right 7.920391e-04	k: 630	n:860000
GDI1   860000 perm   451 sec   (1908 perm/sec)   p_kst 7.325581e-04   p_cons 9.533047e-01   p_joint 7.325581e-04

Joint ci ratio: 1.548945e-01	ci left: 6.786496e-04	ci right 7.936821e-04	k: 639	n:870000
Cons ci ratio: 9.302079e-04	ci left: 9.528534e-01	ci right 9.537413e-01	k: 829370	n:870000
KS ci ratio: 1.548945e-01	ci left: 6.786496e-04	ci right 7.936821e-04	k: 639	n:870000
GDI1   870000 perm   459 sec   (1894 perm/sec)   p_kst 7.344828e-04   p_cons 9.532989e-01   p_joint 7.344828e-04

Joint ci ratio: 1.541736e-01	ci left: 6.774922e-04	ci right 7.917446e-04	k: 645	n:880000
Cons ci ratio: 9.247066e-04	ci left: 9.528754e-01	ci right 9.537580e-01	k: 838920	n:880000
KS ci ratio: 1.541736e-01	ci left: 6.774922e-04	ci right 7.917446e-04	k: 645	n:880000
GDI1   880000 perm   468 sec   (1881 perm/sec)   p_kst 7.329545e-04   p_cons 9.533182e-01   p_joint 7.329545e-04

Joint ci ratio: 1.533451e-01	ci left: 6.774425e-04	ci right 7.910162e-04	k: 652	n:890000
Cons ci ratio: 9.194061e-04	ci left: 9.528867e-01	ci right 9.537643e-01	k: 848461	n:890000
KS ci ratio: 1.533451e-01	ci left: 6.774425e-04	ci right 7.910162e-04	k: 652	n:890000
GDI1   890000 perm   476 sec   (1868 perm/sec)   p_kst 7.325843e-04   p_cons 9.533270e-01   p_joint 7.325843e-04

Joint ci ratio: 1.527616e-01	ci left: 6.752580e-04	ci right 7.879953e-04	k: 657	n:900000
Cons ci ratio: 9.141043e-04	ci left: 9.529067e-01	ci right 9.537793e-01	k: 858010	n:900000
KS ci ratio: 1.527616e-01	ci left: 6.752580e-04	ci right 7.879953e-04	k: 657	n:900000
GDI1   900000 perm   485 sec   (1856 perm/sec)   p_kst 7.300000e-04   p_cons 9.533444e-01   p_joint 7.300000e-04

Joint ci ratio: 1.517273e-01	ci left: 6.773510e-04	ci right 7.896026e-04	k: 666	n:910000
Cons ci ratio: 9.093535e-04	ci left: 9.528811e-01	ci right 9.537490e-01	k: 867518	n:910000
KS ci ratio: 1.517273e-01	ci left: 6.773510e-04	ci right 7.896026e-04	k: 666	n:910000
GDI1   910000 perm   494 sec   (1843 perm/sec)   p_kst 7.318681e-04   p_cons 9.533165e-01   p_joint 7.318681e-04

Joint ci ratio: 1.504911e-01	ci left: 6.814931e-04	ci right 7.934281e-04	k: 677	n:920000
Cons ci ratio: 9.041676e-04	ci left: 9.529062e-01	ci right 9.537692e-01	k: 877072	n:920000
KS ci ratio: 1.504911e-01	ci left: 6.814931e-04	ci right 7.934281e-04	k: 677	n:920000
GDI1   920000 perm   503 sec   (1830 perm/sec)   p_kst 7.358696e-04   p_cons 9.533391e-01   p_joint 7.358696e-04

Joint ci ratio: 1.495020e-01	ci left: 6.834795e-04	ci right 7.949369e-04	k: 686	n:930000
Cons ci ratio: 8.992106e-04	ci left: 9.529167e-01	ci right 9.537751e-01	k: 886613	n:930000
KS ci ratio: 1.495020e-01	ci left: 6.834795e-04	ci right 7.949369e-04	k: 686	n:930000
GDI1   930000 perm   512 sec   (1818 perm/sec)   p_kst 7.376344e-04   p_cons 9.533473e-01   p_joint 7.376344e-04

Joint ci ratio: 1.490689e-01	ci left: 6.803047e-04	ci right 7.908944e-04	k: 690	n:940000
Cons ci ratio: 8.944197e-04	ci left: 9.529185e-01	ci right 9.537723e-01	k: 896146	n:940000
KS ci ratio: 1.490689e-01	ci left: 6.803047e-04	ci right 7.908944e-04	k: 690	n:940000
GDI1   940000 perm   521 sec   (1805 perm/sec)   p_kst 7.340426e-04   p_cons 9.533468e-01   p_joint 7.340426e-04

Joint ci ratio: 1.483196e-01	ci left: 6.802379e-04	ci right 7.902115e-04	k: 697	n:950000
Cons ci ratio: 8.895151e-04	ci left: 9.529393e-01	ci right 9.537884e-01	k: 905697	n:950000
KS ci ratio: 1.483196e-01	ci left: 6.802379e-04	ci right 7.902115e-04	k: 697	n:950000
GDI1   950000 perm   530 sec   (1793 perm/sec)   p_kst 7.336842e-04   p_cons 9.533653e-01   p_joint 7.336842e-04

Joint ci ratio: 1.472682e-01	ci left: 6.831836e-04	ci right 7.927817e-04	k: 707	n:960000
Cons ci ratio: 8.850634e-04	ci left: 9.529221e-01	ci right 9.537669e-01	k: 915212	n:960000
KS ci ratio: 1.472682e-01	ci left: 6.831836e-04	ci right 7.927817e-04	k: 707	n:960000
GDI1   960000 perm   539 sec   (1781 perm/sec)   p_kst 7.364583e-04   p_cons 9.533458e-01   p_joint 7.364583e-04

Joint ci ratio: 1.464431e-01	ci left: 6.840849e-04	ci right 7.931589e-04	k: 715	n:970000
Cons ci ratio: 8.805144e-04	ci left: 9.529217e-01	ci right 9.537622e-01	k: 924743	n:970000
KS ci ratio: 1.464431e-01	ci left: 6.840849e-04	ci right 7.931589e-04	k: 715	n:970000
GDI1   970000 perm   549 sec   (1768 perm/sec)   p_kst 7.371134e-04   p_cons 9.533433e-01   p_joint 7.371134e-04

Joint ci ratio: 1.456318e-01	ci left: 6.849694e-04	ci right 7.935267e-04	k: 723	n:980000
Cons ci ratio: 8.762759e-04	ci left: 9.528968e-01	ci right 9.537332e-01	k: 934250	n:980000
KS ci ratio: 1.456318e-01	ci left: 6.849694e-04	ci right 7.935267e-04	k: 723	n:980000
GDI1   980000 perm   558 sec   (1756 perm/sec)   p_kst 7.377551e-04   p_cons 9.533163e-01   p_joint 7.377551e-04

Joint ci ratio: 1.450321e-01	ci left: 6.838907e-04	ci right 7.917922e-04	k: 729	n:990000
Cons ci ratio: 8.722659e-04	ci left: 9.528552e-01	ci right 9.536876e-01	k: 943740	n:990000
KS ci ratio: 1.450321e-01	ci left: 6.838907e-04	ci right 7.917922e-04	k: 729	n:990000
GDI1   990000 perm   568 sec   (1744 perm/sec)   p_kst 7.363636e-04   p_cons 9.532727e-01   p_joint 7.363636e-04

Joint ci ratio: 1.446367e-01	ci left: 6.809068e-04	ci right 7.880192e-04	k: 733	n:1000000
Cons ci ratio: 8.673745e-04	ci left: 9.529108e-01	ci right 9.537386e-01	k: 953326	n:1000000
KS ci ratio: 1.446367e-01	ci left: 6.809068e-04	ci right 7.880192e-04	k: 733	n:1000000
GDI1   1000000 perm   577 sec   (1733 perm/sec)   p_kst 7.330000e-04   p_cons 9.533260e-01   p_joint 7.330000e-04

Joint ci ratio: 1.433722e-01	ci left: 6.865728e-04	ci right 7.935516e-04	k: 746	n:1010000
Cons ci ratio: 8.630339e-04	ci left: 9.529165e-01	ci right 9.537403e-01	k: 962863	n:1010000
KS ci ratio: 1.433722e-01	ci left: 6.865728e-04	ci right 7.935516e-04	k: 746	n:1010000
GDI1   1010000 perm   587 sec   (1721 perm/sec)   p_kst 7.386139e-04   p_cons 9.533297e-01   p_joint 7.386139e-04

Joint ci ratio: 1.427999e-01	ci left: 6.855135e-04	ci right 7.918645e-04	k: 752	n:1020000
Cons ci ratio: 8.587578e-04	ci left: 9.529222e-01	ci right 9.537419e-01	k: 972400	n:1020000
KS ci ratio: 1.427999e-01	ci left: 6.855135e-04	ci right 7.918645e-04	k: 752	n:1020000
GDI1   1020000 perm   596 sec   (1711 perm/sec)   p_kst 7.372549e-04   p_cons 9.533333e-01   p_joint 7.372549e-04

Joint ci ratio: 1.421408e-01	ci left: 6.854119e-04	ci right 7.912147e-04	k: 759	n:1030000
Cons ci ratio: 8.543768e-04	ci left: 9.529454e-01	ci right 9.537608e-01	k: 981955	n:1030000
KS ci ratio: 1.421408e-01	ci left: 6.854119e-04	ci right 7.912147e-04	k: 759	n:1030000
GDI1   1030000 perm   606 sec   (1700 perm/sec)   p_kst 7.368932e-04   p_cons 9.533544e-01   p_joint 7.368932e-04

Joint ci ratio: 1.413065e-01	ci left: 6.871684e-04	ci right 7.925673e-04	k: 768	n:1040000
Cons ci ratio: 8.502182e-04	ci left: 9.529516e-01	ci right 9.537631e-01	k: 991493	n:1040000
KS ci ratio: 1.413065e-01	ci left: 6.871684e-04	ci right 7.925673e-04	k: 768	n:1040000
GDI1   1040000 perm   616 sec   (1689 perm/sec)   p_kst 7.384615e-04   p_cons 9.533587e-01   p_joint 7.384615e-04

Joint ci ratio: 1.403964e-01	ci left: 6.898122e-04	ci right 7.948782e-04	k: 778	n:1050000
Cons ci ratio: 8.459023e-04	ci left: 9.529808e-01	ci right 9.537882e-01	k: 1001055	n:1050000
KS ci ratio: 1.403964e-01	ci left: 6.898122e-04	ci right 7.948782e-04	k: 778	n:1050000
GDI1   1050000 perm   626 sec   (1678 perm/sec)   p_kst 7.409524e-04   p_cons 9.533857e-01   p_joint 7.409524e-04

Joint ci ratio: 1.396810e-01	ci left: 6.905873e-04	ci right 7.951907e-04	k: 786	n:1060000
Cons ci ratio: 8.420622e-04	ci left: 9.529658e-01	ci right 9.537695e-01	k: 1010571	n:1060000
KS ci ratio: 1.396810e-01	ci left: 6.905873e-04	ci right 7.951907e-04	k: 786	n:1060000
GDI1   1060000 perm   636 sec   (1668 perm/sec)   p_kst 7.415094e-04   p_cons 9.533689e-01   p_joint 7.415094e-04

Joint ci ratio: 1.393276e-01	ci left: 6.877410e-04	ci right 7.916279e-04	k: 790	n:1070000
Cons ci ratio: 8.383796e-04	ci left: 9.529398e-01	ci right 9.537400e-01	k: 1020075	n:1070000
KS ci ratio: 1.393276e-01	ci left: 6.877410e-04	ci right 7.916279e-04	k: 790	n:1070000
GDI1   1070000 perm   646 sec   (1657 perm/sec)   p_kst 7.383178e-04   p_cons 9.533411e-01   p_joint 7.383178e-04

Joint ci ratio: 1.386283e-01	ci left: 6.885229e-04	ci right 7.919627e-04	k: 798	n:1080000
Cons ci ratio: 8.345448e-04	ci left: 9.529357e-01	ci right 9.537322e-01	k: 1029602	n:1080000
KS ci ratio: 1.386283e-01	ci left: 6.885229e-04	ci right 7.919627e-04	k: 798	n:1080000
GDI1   1080000 perm   656 sec   (1647 perm/sec)   p_kst 7.388889e-04   p_cons 9.533352e-01   p_joint 7.388889e-04

Joint ci ratio: 1.384554e-01	ci left: 6.839773e-04	ci right 7.865956e-04	k: 800	n:1090000
Cons ci ratio: 8.308306e-04	ci left: 9.529243e-01	ci right 9.537173e-01	k: 1039121	n:1090000
KS ci ratio: 1.384554e-01	ci left: 6.839773e-04	ci right 7.865956e-04	k: 800	n:1090000
GDI1   1090000 perm   666 sec   (1636 perm/sec)   p_kst 7.339450e-04   p_cons 9.533220e-01   p_joint 7.339450e-04

Joint ci ratio: 1.379398e-01	ci left: 6.830253e-04	ci right 7.850878e-04	k: 806	n:1100000
Cons ci ratio: 8.271233e-04	ci left: 9.529177e-01	ci right 9.537071e-01	k: 1048645	n:1100000
KS ci ratio: 1.379398e-01	ci left: 6.830253e-04	ci right 7.850878e-04	k: 806	n:1100000
GDI1   1100000 perm   676 sec   (1626 perm/sec)   p_kst 7.327273e-04   p_cons 9.533136e-01   p_joint 7.327273e-04

Joint ci ratio: 1.370090e-01	ci left: 6.864411e-04	ci right 7.882653e-04	k: 817	n:1110000
Cons ci ratio: 8.232985e-04	ci left: 9.529294e-01	ci right 9.537151e-01	k: 1058189	n:1110000
KS ci ratio: 1.370090e-01	ci left: 6.864411e-04	ci right 7.882653e-04	k: 817	n:1110000
GDI1   1110000 perm   687 sec   (1617 perm/sec)   p_kst 7.360360e-04   p_cons 9.533234e-01   p_joint 7.360360e-04

Joint ci ratio: 1.363439e-01	ci left: 6.872108e-04	ci right 7.886142e-04	k: 825	n:1120000
Cons ci ratio: 8.196496e-04	ci left: 9.529273e-01	ci right 9.537096e-01	k: 1067718	n:1120000
KS ci ratio: 1.363439e-01	ci left: 6.872108e-04	ci right 7.886142e-04	k: 825	n:1120000
GDI1   1120000 perm   697 sec   (1607 perm/sec)   p_kst 7.366071e-04   p_cons 9.533196e-01   p_joint 7.366071e-04

Joint ci ratio: 1.362618e-01	ci left: 6.819839e-04	ci right 7.825506e-04	k: 826	n:1130000
Cons ci ratio: 8.160163e-04	ci left: 9.529289e-01	ci right 9.537077e-01	k: 1077251	n:1130000
KS ci ratio: 1.362618e-01	ci left: 6.819839e-04	ci right 7.825506e-04	k: 826	n:1130000
GDI1   1130000 perm   707 sec   (1598 perm/sec)   p_kst 7.309735e-04   p_cons 9.533195e-01   p_joint 7.309735e-04

Joint ci ratio: 1.360156e-01	ci left: 6.785435e-04	ci right 7.784074e-04	k: 829	n:1140000
Cons ci ratio: 8.124950e-04	ci left: 9.529234e-01	ci right 9.536988e-01	k: 1086776	n:1140000
KS ci ratio: 1.360156e-01	ci left: 6.785435e-04	ci right 7.784074e-04	k: 829	n:1140000
GDI1   1140000 perm   718 sec   (1588 perm/sec)   p_kst 7.271930e-04   p_cons 9.533123e-01   p_joint 7.271930e-04

Joint ci ratio: 1.348025e-01	ci left: 6.852449e-04	ci right 7.851235e-04	k: 844	n:1150000
Cons ci ratio: 8.088766e-04	ci left: 9.529337e-01	ci right 9.537057e-01	k: 1096319	n:1150000
KS ci ratio: 1.348025e-01	ci left: 6.852449e-04	ci right 7.851235e-04	k: 844	n:1150000
GDI1   1150000 perm   728 sec   (1579 perm/sec)   p_kst 7.339130e-04   p_cons 9.533209e-01   p_joint 7.339130e-04

Joint ci ratio: 1.343265e-01	ci left: 6.843358e-04	ci right 7.837016e-04	k: 850	n:1160000
Cons ci ratio: 8.052514e-04	ci left: 9.529500e-01	ci right 9.537185e-01	k: 1105869	n:1160000
KS ci ratio: 1.343265e-01	ci left: 6.843358e-04	ci right 7.837016e-04	k: 850	n:1160000
GDI1   1160000 perm   739 sec   (1569 perm/sec)   p_kst 7.327586e-04   p_cons 9.533353e-01   p_joint 7.327586e-04

Joint ci ratio: 1.337775e-01	ci left: 6.842691e-04	ci right 7.831868e-04	k: 857	n:1170000
Cons ci ratio: 8.016899e-04	ci left: 9.529642e-01	ci right 9.537293e-01	k: 1115417	n:1170000
KS ci ratio: 1.337775e-01	ci left: 6.842691e-04	ci right 7.831868e-04	k: 857	n:1170000
GDI1   1170000 perm   750 sec   (1560 perm/sec)   p_kst 7.324786e-04   p_cons 9.533479e-01   p_joint 7.324786e-04

Joint ci ratio: 1.333122e-01	ci left: 6.833850e-04	ci right 7.818041e-04	k: 863	n:1180000
Cons ci ratio: 7.983045e-04	ci left: 9.529637e-01	ci right 9.537256e-01	k: 1124948	n:1180000
KS ci ratio: 1.333122e-01	ci left: 6.833850e-04	ci right 7.818041e-04	k: 863	n:1180000
GDI1   1180000 perm   760 sec   (1552 perm/sec)   p_kst 7.313559e-04   p_cons 9.533458e-01   p_joint 7.313559e-04

Joint ci ratio: 1.328518e-01	ci left: 6.825164e-04	ci right 7.804442e-04	k: 869	n:1190000
Cons ci ratio: 7.950067e-04	ci left: 9.529582e-01	ci right 9.537169e-01	k: 1134473	n:1190000
KS ci ratio: 1.328518e-01	ci left: 6.825164e-04	ci right 7.804442e-04	k: 869	n:1190000
GDI1   1190000 perm   771 sec   (1543 perm/sec)   p_kst 7.302521e-04   p_cons 9.533387e-01   p_joint 7.302521e-04

Joint ci ratio: 1.325476e-01	ci left: 6.800514e-04	ci right 7.773845e-04	k: 873	n:1200000
Cons ci ratio: 7.918087e-04	ci left: 9.529461e-01	ci right 9.537017e-01	k: 1143990	n:1200000
KS ci ratio: 1.325476e-01	ci left: 6.800514e-04	ci right 7.773845e-04	k: 873	n:1200000
GDI1   1200000 perm   782 sec   (1534 perm/sec)   p_kst 7.275000e-04   p_cons 9.533250e-01   p_joint 7.275000e-04

Joint ci ratio: 1.319451e-01	ci left: 6.808240e-04	ci right 7.777900e-04	k: 881	n:1210000
Cons ci ratio: 7.885976e-04	ci left: 9.529400e-01	ci right 9.536926e-01	k: 1153514	n:1210000
KS ci ratio: 1.319451e-01	ci left: 6.808240e-04	ci right 7.777900e-04	k: 881	n:1210000
GDI1   1210000 perm   793 sec   (1526 perm/sec)   p_kst 7.280992e-04   p_cons 9.533174e-01   p_joint 7.280992e-04

Joint ci ratio: 1.317215e-01	ci left: 6.776213e-04	ci right 7.739548e-04	k: 884	n:1220000
Cons ci ratio: 7.854832e-04	ci left: 9.529274e-01	ci right 9.536770e-01	k: 1163030	n:1220000
KS ci ratio: 1.317215e-01	ci left: 6.776213e-04	ci right 7.739548e-04	k: 884	n:1220000
GDI1   1220000 perm   805 sec   (1516 perm/sec)   p_kst 7.245902e-04   p_cons 9.533033e-01   p_joint 7.245902e-04

Joint ci ratio: 1.312037e-01	ci left: 6.776161e-04	ci right 7.735406e-04	k: 891	n:1230000
Cons ci ratio: 7.821910e-04	ci left: 9.529395e-01	ci right 9.536860e-01	k: 1172576	n:1230000
KS ci ratio: 1.312037e-01	ci left: 6.776161e-04	ci right 7.735406e-04	k: 891	n:1230000
GDI1   1230000 perm   816 sec   (1507 perm/sec)   p_kst 7.243902e-04   p_cons 9.533138e-01   p_joint 7.243902e-04

Joint ci ratio: 1.306919e-01	ci left: 6.776117e-04	ci right 7.731324e-04	k: 898	n:1240000
Cons ci ratio: 7.790880e-04	ci left: 9.529344e-01	ci right 9.536779e-01	k: 1182101	n:1240000
KS ci ratio: 1.306919e-01	ci left: 6.776117e-04	ci right 7.731324e-04	k: 898	n:1240000
GDI1   1240000 perm   828 sec   (1498 perm/sec)   p_kst 7.241935e-04   p_cons 9.533073e-01   p_joint 7.241935e-04

Joint ci ratio: 1.303301e-01	ci left: 6.760602e-04	ci right 7.710779e-04	k: 903	n:1250000
Cons ci ratio: 7.760704e-04	ci left: 9.529238e-01	ci right 9.536645e-01	k: 1191619	n:1250000
KS ci ratio: 1.303301e-01	ci left: 6.760602e-04	ci right 7.710779e-04	k: 903	n:1250000
GDI1   1250000 perm   839 sec   (1489 perm/sec)   p_kst 7.224000e-04   p_cons 9.532952e-01   p_joint 7.224000e-04

Joint ci ratio: 1.298997e-01	ci left: 6.753015e-04	ci right 7.698750e-04	k: 909	n:1260000
Cons ci ratio: 7.729223e-04	ci left: 9.529325e-01	ci right 9.536701e-01	k: 1201161	n:1260000
KS ci ratio: 1.298997e-01	ci left: 6.753015e-04	ci right 7.698750e-04	k: 909	n:1260000
GDI1   1260000 perm   851 sec   (1481 perm/sec)   p_kst 7.214286e-04   p_cons 9.533024e-01   p_joint 7.214286e-04

Joint ci ratio: 1.292620e-01	ci left: 6.768411e-04	ci right 7.711292e-04	k: 918	n:1270000
Cons ci ratio: 7.699823e-04	ci left: 9.529213e-01	ci right 9.536561e-01	k: 1210678	n:1270000
KS ci ratio: 1.292620e-01	ci left: 6.768411e-04	ci right 7.711292e-04	k: 918	n:1270000
GDI1   1270000 perm   863 sec   (1472 perm/sec)   p_kst 7.228346e-04   p_cons 9.532898e-01   p_joint 7.228346e-04

Joint ci ratio: 1.286336e-01	ci left: 6.783578e-04	ci right 7.723626e-04	k: 927	n:1280000
Cons ci ratio: 7.672841e-04	ci left: 9.528860e-01	ci right 9.536182e-01	k: 1220164	n:1280000
KS ci ratio: 1.286336e-01	ci left: 6.783578e-04	ci right 7.723626e-04	k: 927	n:1280000
GDI1   1280000 perm   874 sec   (1464 perm/sec)   p_kst 7.242188e-04   p_cons 9.532531e-01   p_joint 7.242188e-04

Joint ci ratio: 1.278777e-01	ci left: 6.813528e-04	ci right 7.751758e-04	k: 938	n:1290000
Cons ci ratio: 7.645338e-04	ci left: 9.528606e-01	ci right 9.535901e-01	k: 1229662	n:1290000
KS ci ratio: 1.278777e-01	ci left: 6.813528e-04	ci right 7.751758e-04	k: 938	n:1290000
GDI1   1290000 perm   886 sec   (1456 perm/sec)   p_kst 7.271318e-04   p_cons 9.532264e-01   p_joint 7.271318e-04

Joint ci ratio: 1.274038e-01	ci left: 6.813243e-04	ci right 7.747694e-04	k: 945	n:1300000
Cons ci ratio: 7.614974e-04	ci left: 9.528726e-01	ci right 9.535992e-01	k: 1239208	n:1300000
KS ci ratio: 1.274038e-01	ci left: 6.813243e-04	ci right 7.747694e-04	k: 945	n:1300000
GDI1   1300000 perm   898 sec   (1448 perm/sec)   p_kst 7.269231e-04   p_cons 9.532369e-01   p_joint 7.269231e-04

Joint ci ratio: 1.268019e-01	ci left: 6.827752e-04	ci right 7.759436e-04	k: 954	n:1310000
Cons ci ratio: 7.583408e-04	ci left: 9.529028e-01	ci right 9.536265e-01	k: 1248778	n:1310000
KS ci ratio: 1.268019e-01	ci left: 6.827752e-04	ci right 7.759436e-04	k: 954	n:1310000
GDI1   1310000 perm   910 sec   (1440 perm/sec)   p_kst 7.282443e-04   p_cons 9.532656e-01   p_joint 7.282443e-04

Joint ci ratio: 1.264055e-01	ci left: 6.820041e-04	ci right 7.747546e-04	k: 960	n:1320000
Cons ci ratio: 7.554991e-04	ci left: 9.528999e-01	ci right 9.536208e-01	k: 1258305	n:1320000
KS ci ratio: 1.264055e-01	ci left: 6.820041e-04	ci right 7.747546e-04	k: 960	n:1320000
GDI1   1320000 perm   922 sec   (1432 perm/sec)   p_kst 7.272727e-04   p_cons 9.532614e-01   p_joint 7.272727e-04

Joint ci ratio: 1.260781e-01	ci left: 6.805169e-04	ci right 7.728075e-04	k: 965	n:1330000
Cons ci ratio: 7.526447e-04	ci left: 9.529023e-01	ci right 9.536205e-01	k: 1267839	n:1330000
KS ci ratio: 1.260781e-01	ci left: 6.805169e-04	ci right 7.728075e-04	k: 965	n:1330000
GDI1   1330000 perm   934 sec   (1424 perm/sec)   p_kst 7.255639e-04   p_cons 9.532624e-01   p_joint 7.255639e-04

Joint ci ratio: 1.257532e-01	ci left: 6.790522e-04	ci right 7.708891e-04	k: 970	n:1340000
Cons ci ratio: 7.496905e-04	ci left: 9.529204e-01	ci right 9.536358e-01	k: 1277394	n:1340000
KS ci ratio: 1.257532e-01	ci left: 6.790522e-04	ci right 7.708891e-04	k: 970	n:1340000
GDI1   1340000 perm   946 sec   (1416 perm/sec)   p_kst 7.238806e-04   p_cons 9.532791e-01   p_joint 7.238806e-04

Joint ci ratio: 1.255595e-01	ci left: 6.761745e-04	ci right 7.674710e-04	k: 973	n:1350000
Cons ci ratio: 7.469012e-04	ci left: 9.529227e-01	ci right 9.536354e-01	k: 1286928	n:1350000
KS ci ratio: 1.255595e-01	ci left: 6.761745e-04	ci right 7.674710e-04	k: 973	n:1350000
GDI1   1350000 perm   958 sec   (1409 perm/sec)   p_kst 7.207407e-04   p_cons 9.532800e-01   p_joint 7.207407e-04

Joint ci ratio: 1.251746e-01	ci left: 6.754760e-04	ci right 7.663779e-04	k: 979	n:1360000
Cons ci ratio: 7.440936e-04	ci left: 9.529308e-01	ci right 9.536408e-01	k: 1296470	n:1360000
KS ci ratio: 1.251746e-01	ci left: 6.754760e-04	ci right 7.663779e-04	k: 979	n:1360000
GDI1   1360000 perm   971 sec   (1401 perm/sec)   p_kst 7.198529e-04   p_cons 9.532868e-01   p_joint 7.198529e-04

Joint ci ratio: 1.248566e-01	ci left: 6.740810e-04	ci right 7.645476e-04	k: 984	n:1370000
Cons ci ratio: 7.412749e-04	ci left: 9.529439e-01	ci right 9.536513e-01	k: 1306019	n:1370000
KS ci ratio: 1.248566e-01	ci left: 6.740810e-04	ci right 7.645476e-04	k: 984	n:1370000
GDI1   1370000 perm   983 sec   (1393 perm/sec)   p_kst 7.182482e-04   p_cons 9.532985e-01   p_joint 7.182482e-04

Joint ci ratio: 1.242900e-01	ci left: 6.755149e-04	ci right 7.657323e-04	k: 993	n:1380000
Cons ci ratio: 7.384759e-04	ci left: 9.529583e-01	ci right 9.536630e-01	k: 1315570	n:1380000
KS ci ratio: 1.242900e-01	ci left: 6.755149e-04	ci right 7.657323e-04	k: 993	n:1380000
GDI1   1380000 perm   996 sec   (1386 perm/sec)   p_kst 7.195652e-04   p_cons 9.533116e-01   p_joint 7.195652e-04

Joint ci ratio: 1.237928e-01	ci left: 6.762319e-04	ci right 7.661573e-04	k: 1001	n:1390000
Cons ci ratio: 7.360116e-04	ci left: 9.529357e-01	ci right 9.536380e-01	k: 1325070	n:1390000
KS ci ratio: 1.237928e-01	ci left: 6.762319e-04	ci right 7.661573e-04	k: 1001	n:1390000
GDI1   1390000 perm   1008 sec   (1379 perm/sec)   p_kst 7.201439e-04   p_cons 9.532878e-01   p_joint 7.201439e-04

Joint ci ratio: 1.229367e-01	ci left: 6.810932e-04	ci right 7.709930e-04	k: 1015	n:1400000
Cons ci ratio: 7.333952e-04	ci left: 9.529349e-01	ci right 9.536347e-01	k: 1334600	n:1400000
KS ci ratio: 1.229367e-01	ci left: 6.810932e-04	ci right 7.709930e-04	k: 1015	n:1400000
GDI1   1400000 perm   1021 sec   (1371 perm/sec)   p_kst 7.250000e-04   p_cons 9.532857e-01   p_joint 7.250000e-04

Joint ci ratio: 1.223957e-01	ci left: 6.824499e-04	ci right 7.721037e-04	k: 1024	n:1410000
Cons ci ratio: 7.309287e-04	ci left: 9.529191e-01	ci right 9.536166e-01	k: 1344109	n:1410000
KS ci ratio: 1.223957e-01	ci left: 6.824499e-04	ci right 7.721037e-04	k: 1024	n:1410000
GDI1   1410000 perm   1034 sec   (1364 perm/sec)   p_kst 7.262411e-04   p_cons 9.532688e-01   p_joint 7.262411e-04

Joint ci ratio: 1.218028e-01	ci left: 6.844711e-04	ci right 7.739235e-04	k: 1034	n:1420000
Cons ci ratio: 7.286019e-04	ci left: 9.528895e-01	ci right 9.535847e-01	k: 1353598	n:1420000
KS ci ratio: 1.218028e-01	ci left: 6.844711e-04	ci right 7.739235e-04	k: 1034	n:1420000
GDI1   1420000 perm   1046 sec   (1357 perm/sec)   p_kst 7.281690e-04   p_cons 9.532380e-01   p_joint 7.281690e-04

Joint ci ratio: 1.215683e-01	ci left: 6.823966e-04	ci right 7.713938e-04	k: 1038	n:1430000
Cons ci ratio: 7.259722e-04	ci left: 9.529003e-01	ci right 9.535930e-01	k: 1363144	n:1430000
KS ci ratio: 1.215683e-01	ci left: 6.823966e-04	ci right 7.713938e-04	k: 1038	n:1430000
GDI1   1430000 perm   1059 sec   (1351 perm/sec)   p_kst 7.258741e-04   p_cons 9.532476e-01   p_joint 7.258741e-04

Joint ci ratio: 1.209873e-01	ci left: 6.843916e-04	ci right 7.731919e-04	k: 1048	n:1440000
Cons ci ratio: 7.233708e-04	ci left: 9.529109e-01	ci right 9.536012e-01	k: 1372690	n:1440000
KS ci ratio: 1.209873e-01	ci left: 6.843916e-04	ci right 7.731919e-04	k: 1048	n:1440000
GDI1   1440000 perm   1072 sec   (1344 perm/sec)   p_kst 7.277778e-04   p_cons 9.532569e-01   p_joint 7.277778e-04

Joint ci ratio: 1.205286e-01	ci left: 6.850222e-04	ci right 7.735433e-04	k: 1056	n:1450000
Cons ci ratio: 7.208697e-04	ci left: 9.529124e-01	ci right 9.536003e-01	k: 1382223	n:1450000
KS ci ratio: 1.205286e-01	ci left: 6.850222e-04	ci right 7.735433e-04	k: 1056	n:1450000
GDI1   1450000 perm   1085 sec   (1337 perm/sec)   p_kst 7.282759e-04   p_cons 9.532572e-01   p_joint 7.282759e-04

Joint ci ratio: 1.200750e-01	ci left: 6.856449e-04	ci right 7.738893e-04	k: 1064	n:1460000
Cons ci ratio: 7.182342e-04	ci left: 9.529338e-01	ci right 9.536192e-01	k: 1391785	n:1460000
KS ci ratio: 1.200750e-01	ci left: 6.856449e-04	ci right 7.738893e-04	k: 1064	n:1460000
GDI1   1460000 perm   1098 sec   (1330 perm/sec)   p_kst 7.287671e-04   p_cons 9.532774e-01   p_joint 7.287671e-04

Joint ci ratio: 1.195151e-01	ci left: 6.875795e-04	ci right 7.756312e-04	k: 1074	n:1470000
Cons ci ratio: 7.156655e-04	ci left: 9.529502e-01	ci right 9.536331e-01	k: 1401340	n:1470000
KS ci ratio: 1.195151e-01	ci left: 6.875795e-04	ci right 7.756312e-04	k: 1074	n:1470000
GDI1   1470000 perm   1111 sec   (1323 perm/sec)   p_kst 7.306122e-04   p_cons 9.532925e-01   p_joint 7.306122e-04

Joint ci ratio: 1.189630e-01	ci left: 6.894890e-04	ci right 7.773486e-04	k: 1084	n:1480000
Cons ci ratio: 7.133352e-04	ci left: 9.529399e-01	ci right 9.536205e-01	k: 1410856	n:1480000
KS ci ratio: 1.189630e-01	ci left: 6.894890e-04	ci right 7.773486e-04	k: 1084	n:1480000
GDI1   1480000 perm   1124 sec   (1317 perm/sec)   p_kst 7.324324e-04   p_cons 9.532811e-01   p_joint 7.324324e-04

Joint ci ratio: 1.184184e-01	ci left: 6.913738e-04	ci right 7.790420e-04	k: 1094	n:1490000
Cons ci ratio: 7.107757e-04	ci left: 9.529613e-01	ci right 9.536396e-01	k: 1420419	n:1490000
KS ci ratio: 1.184184e-01	ci left: 6.913738e-04	ci right 7.790420e-04	k: 1094	n:1490000
GDI1   1490000 perm   1137 sec   (1310 perm/sec)   p_kst 7.342282e-04   p_cons 9.533013e-01   p_joint 7.342282e-04

Joint ci ratio: 1.179882e-01	ci left: 6.919403e-04	ci right 7.793393e-04	k: 1102	n:1500000
Cons ci ratio: 7.085510e-04	ci left: 9.529437e-01	ci right 9.536198e-01	k: 1429924	n:1500000
KS ci ratio: 1.179882e-01	ci left: 6.919403e-04	ci right 7.793393e-04	k: 1102	n:1500000
GDI1   1500000 perm   1151 sec   (1304 perm/sec)   p_kst 7.346667e-04   p_cons 9.532827e-01   p_joint 7.346667e-04

Joint ci ratio: 1.175626e-01	ci left: 6.924998e-04	ci right 7.796322e-04	k: 1110	n:1510000
Cons ci ratio: 7.062105e-04	ci left: 9.529437e-01	ci right 9.536175e-01	k: 1439455	n:1510000
KS ci ratio: 1.175626e-01	ci left: 6.924998e-04	ci right 7.796322e-04	k: 1110	n:1510000
GDI1   1510000 perm   1164 sec   (1297 perm/sec)   p_kst 7.350993e-04   p_cons 9.532815e-01   p_joint 7.350993e-04

Joint ci ratio: 1.172465e-01	ci left: 6.917753e-04	ci right 7.785663e-04	k: 1116	n:1520000
Cons ci ratio: 7.038618e-04	ci left: 9.529475e-01	ci right 9.536192e-01	k: 1448992	n:1520000
KS ci ratio: 1.172465e-01	ci left: 6.917753e-04	ci right 7.785663e-04	k: 1116	n:1520000
GDI1   1520000 perm   1177 sec   (1291 perm/sec)   p_kst 7.342105e-04   p_cons 9.532842e-01   p_joint 7.342105e-04

Joint ci ratio: 1.168808e-01	ci left: 6.916951e-04	ci right 7.781867e-04	k: 1123	n:1530000
Cons ci ratio: 7.014952e-04	ci left: 9.529566e-01	ci right 9.536260e-01	k: 1458537	n:1530000
KS ci ratio: 1.168808e-01	ci left: 6.916951e-04	ci right 7.781867e-04	k: 1123	n:1530000
GDI1   1530000 perm   1191 sec   (1285 perm/sec)   p_kst 7.339869e-04   p_cons 9.532922e-01   p_joint 7.339869e-04

Joint ci ratio: 1.165701e-01	ci left: 6.909859e-04	ci right 7.771433e-04	k: 1129	n:1540000
Cons ci ratio: 6.991829e-04	ci left: 9.529617e-01	ci right 9.536288e-01	k: 1468076	n:1540000
KS ci ratio: 1.165701e-01	ci left: 6.909859e-04	ci right 7.771433e-04	k: 1129	n:1540000
GDI1   1540000 perm   1204 sec   (1279 perm/sec)   p_kst 7.331169e-04   p_cons 9.532961e-01   p_joint 7.331169e-04

Joint ci ratio: 1.164673e-01	ci left: 6.877806e-04	ci right 7.734575e-04	k: 1131	n:1550000
Cons ci ratio: 6.970347e-04	ci left: 9.529485e-01	ci right 9.536136e-01	k: 1477587	n:1550000
KS ci ratio: 1.164673e-01	ci left: 6.877806e-04	ci right 7.734575e-04	k: 1131	n:1550000
GDI1   1550000 perm   1218 sec   (1272 perm/sec)   p_kst 7.296774e-04   p_cons 9.532819e-01   p_joint 7.296774e-04

Joint ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
Cons ci ratio: 6.948861e-04	ci left: 9.529382e-01	ci right 9.536012e-01	k: 1487102	n:1560000
KS ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
GDI1   1560000 perm   1232 sec   (1266 perm/sec)   p_kst 7.282051e-04   p_cons 9.532705e-01   p_joint 7.282051e-04

Joint ci ratio: 1.157032e-01	ci left: 6.882958e-04	ci right 7.734360e-04	k: 1146	n:1570000
Cons ci ratio: 6.925442e-04	ci left: 9.529554e-01	ci right 9.536162e-01	k: 1496660	n:1570000
KS ci ratio: 1.157032e-01	ci left: 6.882958e-04	ci right 7.734360e-04	k: 1146	n:1570000
GDI1   1570000 perm   1246 sec   (1260 perm/sec)   p_kst 7.299363e-04   p_cons 9.532866e-01   p_joint 7.299363e-04

Joint ci ratio: 1.152519e-01	ci left: 6.894712e-04	ci right 7.744014e-04	k: 1155	n:1580000
Cons ci ratio: 6.903338e-04	ci left: 9.529584e-01	ci right 9.536171e-01	k: 1506196	n:1580000
KS ci ratio: 1.152519e-01	ci left: 6.894712e-04	ci right 7.744014e-04	k: 1155	n:1580000
GDI1   1580000 perm   1260 sec   (1254 perm/sec)   p_kst 7.310127e-04   p_cons 9.532886e-01   p_joint 7.310127e-04

Joint ci ratio: 1.148058e-01	ci left: 6.906324e-04	ci right 7.753541e-04	k: 1164	n:1590000
Cons ci ratio: 6.882075e-04	ci left: 9.529532e-01	ci right 9.536099e-01	k: 1515719	n:1590000
KS ci ratio: 1.148058e-01	ci left: 6.906324e-04	ci right 7.753541e-04	k: 1164	n:1590000
GDI1   1590000 perm   1274 sec   (1248 perm/sec)   p_kst 7.320755e-04   p_cons 9.532824e-01   p_joint 7.320755e-04

Joint ci ratio: 1.145113e-01	ci left: 6.899584e-04	ci right 7.743657e-04	k: 1170	n:1600000
Cons ci ratio: 6.860478e-04	ci left: 9.529550e-01	ci right 9.536096e-01	k: 1525253	n:1600000
KS ci ratio: 1.145113e-01	ci left: 6.899584e-04	ci right 7.743657e-04	k: 1170	n:1600000
GDI1   1600000 perm   1288 sec   (1242 perm/sec)   p_kst 7.312500e-04   p_cons 9.532831e-01   p_joint 7.312500e-04

Joint ci ratio: 1.141222e-01	ci left: 6.904999e-04	ci right 7.746669e-04	k: 1178	n:1610000
Cons ci ratio: 6.840418e-04	ci left: 9.529393e-01	ci right 9.535920e-01	k: 1534759	n:1610000
KS ci ratio: 1.141222e-01	ci left: 6.904999e-04	ci right 7.746669e-04	k: 1178	n:1610000
GDI1   1610000 perm   1303 sec   (1236 perm/sec)   p_kst 7.316770e-04   p_cons 9.532665e-01   p_joint 7.316770e-04

Joint ci ratio: 1.137849e-01	ci left: 6.904353e-04	ci right 7.743291e-04	k: 1185	n:1620000
Cons ci ratio: 6.817651e-04	ci left: 9.529616e-01	ci right 9.536121e-01	k: 1544326	n:1620000
KS ci ratio: 1.137849e-01	ci left: 6.904353e-04	ci right 7.743291e-04	k: 1185	n:1620000
GDI1   1620000 perm   1317 sec   (1230 perm/sec)   p_kst 7.314815e-04   p_cons 9.532877e-01   p_joint 7.314815e-04

Joint ci ratio: 1.132607e-01	ci left: 6.927564e-04	ci right 7.765186e-04	k: 1196	n:1630000
Cons ci ratio: 6.796933e-04	ci left: 9.529596e-01	ci right 9.536081e-01	k: 1553854	n:1630000
KS ci ratio: 1.132607e-01	ci left: 6.927564e-04	ci right 7.765186e-04	k: 1196	n:1630000
GDI1   1630000 perm   1332 sec   (1224 perm/sec)   p_kst 7.337423e-04   p_cons 9.532847e-01   p_joint 7.337423e-04

Joint ci ratio: 1.127905e-01	ci left: 6.944575e-04	ci right 7.780535e-04	k: 1206	n:1640000
Cons ci ratio: 6.774363e-04	ci left: 9.529845e-01	ci right 9.536309e-01	k: 1563426	n:1640000
KS ci ratio: 1.127905e-01	ci left: 6.944575e-04	ci right 7.780535e-04	k: 1206	n:1640000
GDI1   1640000 perm   1346 sec   (1218 perm/sec)   p_kst 7.353659e-04   p_cons 9.533085e-01   p_joint 7.353659e-04

Joint ci ratio: 1.126042e-01	ci left: 6.926046e-04	ci right 7.758306e-04	k: 1210	n:1650000
Cons ci ratio: 6.752243e-04	ci left: 9.530061e-01	ci right 9.536504e-01	k: 1572993	n:1650000
KS ci ratio: 1.126042e-01	ci left: 6.926046e-04	ci right 7.758306e-04	k: 1210	n:1650000
GDI1   1650000 perm   1361 sec   (1213 perm/sec)   p_kst 7.333333e-04   p_cons 9.533291e-01   p_joint 7.333333e-04

Joint ci ratio: 1.122340e-01	ci left: 6.931160e-04	ci right 7.761117e-04	k: 1218	n:1660000
Cons ci ratio: 6.729335e-04	ci left: 9.530408e-01	ci right 9.536829e-01	k: 1582582	n:1660000
KS ci ratio: 1.122340e-01	ci left: 6.931160e-04	ci right 7.761117e-04	k: 1218	n:1660000
GDI1   1660000 perm   1375 sec   (1207 perm/sec)   p_kst 7.337349e-04   p_cons 9.533627e-01   p_joint 7.337349e-04

Joint ci ratio: 1.119589e-01	ci left: 6.924577e-04	ci right 7.751578e-04	k: 1224	n:1670000
Cons ci ratio: 6.710902e-04	ci left: 9.530186e-01	ci right 9.536589e-01	k: 1592077	n:1670000
KS ci ratio: 1.119589e-01	ci left: 6.924577e-04	ci right 7.751578e-04	k: 1224	n:1670000
GDI1   1670000 perm   1390 sec   (1201 perm/sec)   p_kst 7.329341e-04   p_cons 9.533395e-01   p_joint 7.329341e-04

Joint ci ratio: 1.116857e-01	ci left: 6.918074e-04	ci right 7.742151e-04	k: 1230	n:1680000
Cons ci ratio: 6.690603e-04	ci left: 9.530235e-01	ci right 9.536619e-01	k: 1601617	n:1680000
KS ci ratio: 1.116857e-01	ci left: 6.918074e-04	ci right 7.742151e-04	k: 1230	n:1680000
GDI1   1680000 perm   1405 sec   (1196 perm/sec)   p_kst 7.321429e-04   p_cons 9.533435e-01   p_joint 7.321429e-04

Joint ci ratio: 1.114146e-01	ci left: 6.911651e-04	ci right 7.732833e-04	k: 1236	n:1690000
Cons ci ratio: 6.670443e-04	ci left: 9.530289e-01	ci right 9.536654e-01	k: 1611158	n:1690000
KS ci ratio: 1.114146e-01	ci left: 6.911651e-04	ci right 7.732833e-04	k: 1236	n:1690000
GDI1   1690000 perm   1419 sec   (1191 perm/sec)   p_kst 7.313609e-04   p_cons 9.533479e-01   p_joint 7.313609e-04

Joint ci ratio: 1.111902e-01	ci left: 6.899587e-04	ci right 7.717576e-04	k: 1241	n:1700000
Cons ci ratio: 6.649585e-04	ci left: 9.530461e-01	ci right 9.536806e-01	k: 1620719	n:1700000
KS ci ratio: 1.111902e-01	ci left: 6.899587e-04	ci right 7.717576e-04	k: 1241	n:1700000
GDI1   1700000 perm   1434 sec   (1185 perm/sec)   p_kst 7.300000e-04   p_cons 9.533641e-01   p_joint 7.300000e-04

Joint ci ratio: 1.109226e-01	ci left: 6.893352e-04	ci right 7.708506e-04	k: 1247	n:1710000
Cons ci ratio: 6.629661e-04	ci left: 9.530531e-01	ci right 9.536857e-01	k: 1630263	n:1710000
KS ci ratio: 1.109226e-01	ci left: 6.893352e-04	ci right 7.708506e-04	k: 1247	n:1710000
GDI1   1710000 perm   1449 sec   (1180 perm/sec)   p_kst 7.292398e-04   p_cons 9.533702e-01   p_joint 7.292398e-04

Joint ci ratio: 1.105248e-01	ci left: 6.904151e-04	ci right 7.717463e-04	k: 1256	n:1720000
Cons ci ratio: 6.609224e-04	ci left: 9.530694e-01	ci right 9.537000e-01	k: 1639823	n:1720000
KS ci ratio: 1.105248e-01	ci left: 6.904151e-04	ci right 7.717463e-04	k: 1256	n:1720000
GDI1   1720000 perm   1464 sec   (1175 perm/sec)   p_kst 7.302326e-04   p_cons 9.533855e-01   p_joint 7.302326e-04

Joint ci ratio: 1.101747e-01	ci left: 6.909209e-04	ci right 7.720372e-04	k: 1264	n:1730000
Cons ci ratio: 6.590045e-04	ci left: 9.530709e-01	ci right 9.536998e-01	k: 1649358	n:1730000
KS ci ratio: 1.101747e-01	ci left: 6.909209e-04	ci right 7.720372e-04	k: 1264	n:1730000
GDI1   1730000 perm   1479 sec   (1170 perm/sec)   p_kst 7.306358e-04   p_cons 9.533861e-01   p_joint 7.306358e-04

Joint ci ratio: 1.097417e-01	ci left: 6.925392e-04	ci right 7.735053e-04	k: 1274	n:1740000
Cons ci ratio: 6.571415e-04	ci left: 9.530673e-01	ci right 9.536944e-01	k: 1658884	n:1740000
KS ci ratio: 1.097417e-01	ci left: 6.925392e-04	ci right 7.735053e-04	k: 1274	n:1740000
GDI1   1740000 perm   1494 sec   (1165 perm/sec)   p_kst 7.321839e-04   p_cons 9.533816e-01   p_joint 7.321839e-04

Joint ci ratio: 1.093990e-01	ci left: 6.930280e-04	ci right 7.737819e-04	k: 1282	n:1750000
Cons ci ratio: 6.550877e-04	ci left: 9.530918e-01	ci right 9.537170e-01	k: 1668459	n:1750000
KS ci ratio: 1.093990e-01	ci left: 6.930280e-04	ci right 7.737819e-04	k: 1282	n:1750000
GDI1   1750000 perm   1509 sec   (1160 perm/sec)   p_kst 7.325714e-04   p_cons 9.534051e-01   p_joint 7.325714e-04

Joint ci ratio: 1.091018e-01	ci left: 6.929589e-04	ci right 7.734713e-04	k: 1289	n:1760000
Cons ci ratio: 6.532618e-04	ci left: 9.530876e-01	ci right 9.537109e-01	k: 1677984	n:1760000
KS ci ratio: 1.091018e-01	ci left: 6.929589e-04	ci right 7.734713e-04	k: 1289	n:1760000
GDI1   1760000 perm   1524 sec   (1155 perm/sec)   p_kst 7.323864e-04   p_cons 9.534000e-01   p_joint 7.323864e-04

Joint ci ratio: 1.087650e-01	ci left: 6.934405e-04	ci right 7.737443e-04	k: 1297	n:1770000
Cons ci ratio: 6.512937e-04	ci left: 9.531049e-01	ci right 9.537264e-01	k: 1687547	n:1770000
KS ci ratio: 1.087650e-01	ci left: 6.934405e-04	ci right 7.737443e-04	k: 1297	n:1770000
GDI1   1770000 perm   1540 sec   (1150 perm/sec)   p_kst 7.327684e-04   p_cons 9.534164e-01   p_joint 7.327684e-04

Joint ci ratio: 1.084314e-01	ci left: 6.939171e-04	ci right 7.740138e-04	k: 1305	n:1780000
Cons ci ratio: 6.493308e-04	ci left: 9.531237e-01	ci right 9.537434e-01	k: 1697113	n:1780000
KS ci ratio: 1.084314e-01	ci left: 6.939171e-04	ci right 7.740138e-04	k: 1305	n:1780000
GDI1   1780000 perm   1555 sec   (1145 perm/sec)   p_kst 7.331461e-04   p_cons 9.534343e-01   p_joint 7.331461e-04

Joint ci ratio: 1.081832e-01	ci left: 6.933016e-04	ci right 7.731324e-04	k: 1311	n:1790000
Cons ci ratio: 6.476259e-04	ci left: 9.531093e-01	ci right 9.537273e-01	k: 1706620	n:1790000
KS ci ratio: 1.081832e-01	ci left: 6.933016e-04	ci right 7.731324e-04	k: 1311	n:1790000
GDI1   1790000 perm   1570 sec   (1140 perm/sec)   p_kst 7.324022e-04   p_cons 9.534190e-01   p_joint 7.324022e-04

Joint ci ratio: 1.077324e-01	ci left: 6.953961e-04	ci right 7.751133e-04	k: 1322	n:1800000
Cons ci ratio: 6.458615e-04	ci left: 9.531050e-01	ci right 9.537213e-01	k: 1716145	n:1800000
KS ci ratio: 1.077324e-01	ci left: 6.953961e-04	ci right 7.751133e-04	k: 1322	n:1800000
GDI1   1800000 perm   1585 sec   (1135 perm/sec)   p_kst 7.344444e-04   p_cons 9.534139e-01   p_joint 7.344444e-04

Joint ci ratio: 1.073678e-01	ci left: 6.963928e-04	ci right 7.759369e-04	k: 1331	n:1810000
Cons ci ratio: 6.441075e-04	ci left: 9.531013e-01	ci right 9.537160e-01	k: 1725671	n:1810000
KS ci ratio: 1.073678e-01	ci left: 6.963928e-04	ci right 7.759369e-04	k: 1331	n:1810000
GDI1   1810000 perm   1601 sec   (1130 perm/sec)   p_kst 7.353591e-04   p_cons 9.534094e-01   p_joint 7.353591e-04

Joint ci ratio: 1.070468e-01	ci left: 6.968442e-04	ci right 7.761870e-04	k: 1339	n:1820000
Cons ci ratio: 6.423478e-04	ci left: 9.531005e-01	ci right 9.537134e-01	k: 1735202	n:1820000
KS ci ratio: 1.070468e-01	ci left: 6.968442e-04	ci right 7.761870e-04	k: 1339	n:1820000
GDI1   1820000 perm   1617 sec   (1126 perm/sec)   p_kst 7.357143e-04   p_cons 9.534077e-01   p_joint 7.357143e-04

Joint ci ratio: 1.066890e-01	ci left: 6.978229e-04	ci right 7.769949e-04	k: 1348	n:1830000
Cons ci ratio: 6.407561e-04	ci left: 9.530783e-01	ci right 9.536897e-01	k: 1744694	n:1830000
KS ci ratio: 1.066890e-01	ci left: 6.978229e-04	ci right 7.769949e-04	k: 1348	n:1830000
GDI1   1830000 perm   1632 sec   (1121 perm/sec)   p_kst 7.366120e-04   p_cons 9.533847e-01   p_joint 7.366120e-04

Joint ci ratio: 1.062957e-01	ci left: 6.993204e-04	ci right 7.783516e-04	k: 1358	n:1840000
Cons ci ratio: 6.389650e-04	ci left: 9.530857e-01	ci right 9.536954e-01	k: 1754240	n:1840000
KS ci ratio: 1.062957e-01	ci left: 6.993204e-04	ci right 7.783516e-04	k: 1358	n:1840000
GDI1   1840000 perm   1648 sec   (1116 perm/sec)   p_kst 7.380435e-04   p_cons 9.533913e-01   p_joint 7.380435e-04

Joint ci ratio: 1.062568e-01	ci left: 6.960664e-04	ci right 7.746992e-04	k: 1359	n:1850000
Cons ci ratio: 6.371385e-04	ci left: 9.531002e-01	ci right 9.537081e-01	k: 1763799	n:1850000
KS ci ratio: 1.062568e-01	ci left: 6.960664e-04	ci right 7.746992e-04	k: 1359	n:1850000
GDI1   1850000 perm   1664 sec   (1112 perm/sec)   p_kst 7.345946e-04   p_cons 9.534049e-01   p_joint 7.345946e-04

Joint ci ratio: 1.059457e-01	ci left: 6.965111e-04	ci right 7.749493e-04	k: 1367	n:1860000
Cons ci ratio: 6.352544e-04	ci left: 9.531247e-01	ci right 9.537309e-01	k: 1773377	n:1860000
KS ci ratio: 1.059457e-01	ci left: 6.965111e-04	ci right 7.749493e-04	k: 1367	n:1860000
GDI1   1860000 perm   1680 sec   (1107 perm/sec)   p_kst 7.349462e-04   p_cons 9.534285e-01   p_joint 7.349462e-04

Joint ci ratio: 1.057141e-01	ci left: 6.959101e-04	ci right 7.740987e-04	k: 1373	n:1870000
Cons ci ratio: 6.335814e-04	ci left: 9.531216e-01	ci right 9.537262e-01	k: 1782904	n:1870000
KS ci ratio: 1.057141e-01	ci left: 6.959101e-04	ci right 7.740987e-04	k: 1373	n:1870000
GDI1   1870000 perm   1696 sec   (1102 perm/sec)   p_kst 7.342246e-04   p_cons 9.534246e-01   p_joint 7.342246e-04

Joint ci ratio: 1.052934e-01	ci left: 6.979051e-04	ci right 7.759865e-04	k: 1384	n:1880000
Cons ci ratio: 6.319366e-04	ci left: 9.531164e-01	ci right 9.537194e-01	k: 1792427	n:1880000
KS ci ratio: 1.052934e-01	ci left: 6.979051e-04	ci right 7.759865e-04	k: 1384	n:1880000
GDI1   1880000 perm   1712 sec   (1098 perm/sec)   p_kst 7.361702e-04   p_cons 9.534186e-01   p_joint 7.361702e-04

Joint ci ratio: 1.049529e-01	ci left: 6.988492e-04	ci right 7.767678e-04	k: 1393	n:1890000
Cons ci ratio: 6.302821e-04	ci left: 9.531145e-01	ci right 9.537159e-01	k: 1801956	n:1890000
KS ci ratio: 1.049529e-01	ci left: 6.988492e-04	ci right 7.767678e-04	k: 1393	n:1890000
GDI1   1890000 perm   1729 sec   (1093 perm/sec)   p_kst 7.370370e-04   p_cons 9.534159e-01   p_joint 7.370370e-04

Joint ci ratio: 1.047278e-01	ci left: 6.982461e-04	ci right 7.759202e-04	k: 1399	n:1900000
Cons ci ratio: 6.284952e-04	ci left: 9.531331e-01	ci right 9.537329e-01	k: 1811524	n:1900000
KS ci ratio: 1.047278e-01	ci left: 6.982461e-04	ci right 7.759202e-04	k: 1399	n:1900000
GDI1   1900000 perm   1745 sec   (1089 perm/sec)   p_kst 7.363158e-04   p_cons 9.534337e-01   p_joint 7.363158e-04

Joint ci ratio: 1.044669e-01	ci left: 6.981595e-04	ci right 7.756186e-04	k: 1406	n:1910000
Cons ci ratio: 6.268490e-04	ci left: 9.531337e-01	ci right 9.537319e-01	k: 1821058	n:1910000
KS ci ratio: 1.044669e-01	ci left: 6.981595e-04	ci right 7.756186e-04	k: 1406	n:1910000
GDI1   1910000 perm   1761 sec   (1085 perm/sec)   p_kst 7.361257e-04   p_cons 9.534335e-01   p_joint 7.361257e-04

Joint ci ratio: 1.041712e-01	ci left: 6.985812e-04	ci right 7.758542e-04	k: 1414	n:1920000
Cons ci ratio: 6.253916e-04	ci left: 9.531093e-01	ci right 9.537060e-01	k: 1830544	n:1920000
KS ci ratio: 1.041712e-01	ci left: 6.985812e-04	ci right 7.758542e-04	k: 1414	n:1920000
GDI1   1920000 perm   1777 sec   (1080 perm/sec)   p_kst 7.364583e-04   p_cons 9.534083e-01   p_joint 7.364583e-04

Joint ci ratio: 1.039145e-01	ci left: 6.984941e-04	ci right 7.755556e-04	k: 1421	n:1930000
Cons ci ratio: 6.238970e-04	ci left: 9.530918e-01	ci right 9.536871e-01	k: 1840043	n:1930000
KS ci ratio: 1.039145e-01	ci left: 6.984941e-04	ci right 7.755556e-04	k: 1421	n:1930000
GDI1   1930000 perm   1794 sec   (1076 perm/sec)   p_kst 7.362694e-04   p_cons 9.533902e-01   p_joint 7.362694e-04

Joint ci ratio: 1.038781e-01	ci left: 6.953957e-04	ci right 7.720868e-04	k: 1422	n:1940000
Cons ci ratio: 6.222504e-04	ci left: 9.530978e-01	ci right 9.536916e-01	k: 1849587	n:1940000
KS ci ratio: 1.038781e-01	ci left: 6.953957e-04	ci right 7.720868e-04	k: 1422	n:1940000
GDI1   1940000 perm   1811 sec   (1071 perm/sec)   p_kst 7.329897e-04   p_cons 9.533954e-01   p_joint 7.329897e-04

Joint ci ratio: 1.036599e-01	ci left: 6.948266e-04	ci right 7.712841e-04	k: 1428	n:1950000
Cons ci ratio: 6.207064e-04	ci left: 9.530909e-01	ci right 9.536832e-01	k: 1859106	n:1950000
KS ci ratio: 1.036599e-01	ci left: 6.948266e-04	ci right 7.712841e-04	k: 1428	n:1950000
GDI1   1950000 perm   1827 sec   (1067 perm/sec)   p_kst 7.323077e-04   p_cons 9.533877e-01   p_joint 7.323077e-04

Joint ci ratio: 1.034069e-01	ci left: 6.947605e-04	ci right 7.710129e-04	k: 1435	n:1960000
Cons ci ratio: 6.190672e-04	ci left: 9.530994e-01	ci right 9.536901e-01	k: 1868655	n:1960000
KS ci ratio: 1.034069e-01	ci left: 6.947605e-04	ci right 7.710129e-04	k: 1435	n:1960000
GDI1   1960000 perm   1844 sec   (1063 perm/sec)   p_kst 7.321429e-04   p_cons 9.533954e-01   p_joint 7.321429e-04

Joint ci ratio: 1.030130e-01	ci left: 6.966735e-04	ci right 7.728269e-04	k: 1446	n:1970000
Cons ci ratio: 6.173985e-04	ci left: 9.531139e-01	ci right 9.537030e-01	k: 1878216	n:1970000
KS ci ratio: 1.030130e-01	ci left: 6.966735e-04	ci right 7.728269e-04	k: 1446	n:1970000
GDI1   1970000 perm   1860 sec   (1059 perm/sec)   p_kst 7.340102e-04   p_cons 9.534091e-01   p_joint 7.340102e-04

Joint ci ratio: 1.028001e-01	ci left: 6.961072e-04	ci right 7.720320e-04	k: 1452	n:1980000
Cons ci ratio: 6.159078e-04	ci left: 9.531045e-01	ci right 9.536922e-01	k: 1887730	n:1980000
KS ci ratio: 1.028001e-01	ci left: 6.961072e-04	ci right 7.720320e-04	k: 1452	n:1980000
GDI1   1980000 perm   1877 sec   (1055 perm/sec)   p_kst 7.333333e-04   p_cons 9.533990e-01   p_joint 7.333333e-04

Joint ci ratio: 1.025534e-01	ci left: 6.960364e-04	ci right 7.717603e-04	k: 1459	n:1990000
Cons ci ratio: 6.143062e-04	ci left: 9.531128e-01	ci right 9.536990e-01	k: 1897279	n:1990000
KS ci ratio: 1.025534e-01	ci left: 6.960364e-04	ci right 7.717603e-04	k: 1459	n:1990000
GDI1   1990000 perm   1894 sec   (1051 perm/sec)   p_kst 7.331658e-04   p_cons 9.534065e-01   p_joint 7.331658e-04

Joint ci ratio: 1.023434e-01	ci left: 6.954794e-04	ci right 7.709784e-04	k: 1465	n:2000000
Cons ci ratio: 6.127653e-04	ci left: 9.531140e-01	ci right 9.536987e-01	k: 1906814	n:2000000
KS ci ratio: 1.023434e-01	ci left: 6.954794e-04	ci right 7.709784e-04	k: 1465	n:2000000
GDI1   2000000 perm   1910 sec   (1047 perm/sec)   p_kst 7.325000e-04   p_cons 9.534070e-01   p_joint 7.325000e-04

Joint ci ratio: 1.021346e-01	ci left: 6.949280e-04	ci right 7.702041e-04	k: 1471	n:2010000
Cons ci ratio: 6.113317e-04	ci left: 9.531012e-01	ci right 9.536845e-01	k: 1916321	n:2010000
KS ci ratio: 1.021346e-01	ci left: 6.949280e-04	ci right 7.702041e-04	k: 1471	n:2010000
GDI1   2010000 perm   1928 sec   (1043 perm/sec)   p_kst 7.318408e-04   p_cons 9.533935e-01   p_joint 7.318408e-04

Joint ci ratio: 1.020308e-01	ci left: 6.929350e-04	ci right 7.679143e-04	k: 1474	n:2020000
Cons ci ratio: 6.098368e-04	ci left: 9.530990e-01	ci right 9.536809e-01	k: 1925849	n:2020000
KS ci ratio: 1.020308e-01	ci left: 6.929350e-04	ci right 7.679143e-04	k: 1474	n:2020000
GDI1   2020000 perm   1945 sec   (1039 perm/sec)   p_kst 7.297030e-04   p_cons 9.533906e-01   p_joint 7.297030e-04

Joint ci ratio: 1.017209e-01	ci left: 6.938421e-04	ci right 7.686778e-04	k: 1483	n:2030000
Cons ci ratio: 6.082347e-04	ci left: 9.531141e-01	ci right 9.536945e-01	k: 1935412	n:2030000
KS ci ratio: 1.017209e-01	ci left: 6.938421e-04	ci right 7.686778e-04	k: 1483	n:2030000
GDI1   2030000 perm   1962 sec   (1035 perm/sec)   p_kst 7.305419e-04   p_cons 9.534049e-01   p_joint 7.305419e-04

Joint ci ratio: 1.014138e-01	ci left: 6.947406e-04	ci right 7.694336e-04	k: 1492	n:2040000
Cons ci ratio: 6.067222e-04	ci left: 9.531177e-01	ci right 9.536967e-01	k: 1944952	n:2040000
KS ci ratio: 1.014138e-01	ci left: 6.947406e-04	ci right 7.694336e-04	k: 1492	n:2040000
GDI1   2040000 perm   1979 sec   (1031 perm/sec)   p_kst 7.313725e-04   p_cons 9.534078e-01   p_joint 7.313725e-04

Joint ci ratio: 1.013122e-01	ci left: 6.927779e-04	ci right 7.671808e-04	k: 1495	n:2050000
Cons ci ratio: 6.052641e-04	ci left: 9.531150e-01	ci right 9.536925e-01	k: 1954479	n:2050000
KS ci ratio: 1.013122e-01	ci left: 6.927779e-04	ci right 7.671808e-04	k: 1495	n:2050000
GDI1   2050000 perm   1997 sec   (1027 perm/sec)   p_kst 7.292683e-04   p_cons 9.534044e-01   p_joint 7.292683e-04

Joint ci ratio: 1.010424e-01	ci left: 6.932001e-04	ci right 7.674383e-04	k: 1503	n:2060000
Cons ci ratio: 6.037241e-04	ci left: 9.531259e-01	ci right 9.537020e-01	k: 1964034	n:2060000
KS ci ratio: 1.010424e-01	ci left: 6.932001e-04	ci right 7.674383e-04	k: 1503	n:2060000
GDI1   2060000 perm   2015 sec   (1023 perm/sec)   p_kst 7.296117e-04   p_cons 9.534146e-01   p_joint 7.296117e-04

Joint ci ratio: 1.006748e-01	ci left: 6.950313e-04	ci right 7.691789e-04	k: 1514	n:2070000
Cons ci ratio: 6.022776e-04	ci left: 9.531246e-01	ci right 9.536993e-01	k: 1973564	n:2070000
KS ci ratio: 1.006748e-01	ci left: 6.950313e-04	ci right 7.691789e-04	k: 1514	n:2070000
GDI1   2070000 perm   2032 sec   (1019 perm/sec)   p_kst 7.314010e-04   p_cons 9.534126e-01   p_joint 7.314010e-04

Joint ci ratio: 1.003441e-01	ci left: 6.963767e-04	ci right 7.704094e-04	k: 1524	n:2080000
Cons ci ratio: 6.007602e-04	ci left: 9.531353e-01	ci right 9.537086e-01	k: 1983119	n:2080000
KS ci ratio: 1.003441e-01	ci left: 6.963767e-04	ci right 7.704094e-04	k: 1524	n:2080000
GDI1   2080000 perm   2050 sec   (1014 perm/sec)   p_kst 7.326923e-04   p_cons 9.534226e-01   p_joint 7.326923e-04

Joint ci ratio: 1.000819e-01	ci left: 6.967766e-04	ci right 7.706469e-04	k: 1532	n:2090000
Cons ci ratio: 5.994349e-04	ci left: 9.531191e-01	ci right 9.536911e-01	k: 1992618	n:2090000
KS ci ratio: 1.000819e-01	ci left: 6.967766e-04	ci right 7.706469e-04	k: 1532	n:2090000
GDI1   2090000 perm   2068 sec   (1010 perm/sec)   p_kst 7.330144e-04   p_cons 9.534057e-01   p_joint 7.330144e-04

Joint ci ratio: 9.991914e-02	ci left: 6.957800e-04	ci right 7.694176e-04	k: 1537	n:2100000
Cons ci ratio: 5.980991e-04	ci left: 9.531059e-01	ci right 9.536766e-01	k: 2002123	n:2100000
KS ci ratio: 9.991914e-02	ci left: 6.957800e-04	ci right 7.694176e-04	k: 1537	n:2100000
GDI1   2100000 perm   2087 sec   (1006 perm/sec)   p_kst 7.319048e-04   p_cons 9.533919e-01   p_joint 7.319048e-04

Outputting figure to mutsig2_images.part000000000070/GDI1.3_1388_2100000_0.0007319_0.95339_0.0007319.png
                gene_name: GDI1
               theta_stop: 0.100 
                    nperm: 2100000 
                     p_ks: 0.00073 
        ci_ks_bounds_left: 0.00070 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.00073 
     ci_joint_bounds_left: 0.00070 
    ci_joint_bounds_right: 0.00077 

Current progress: 51 percent done.
GDPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
KS ci ratio: 7.767639e-03	ci left: 9.583798e-01	ci right 9.659480e-01	k: 9623	n:10000
GDPD4   10000 perm   2 sec   (5836 perm/sec)   p_kst 9.623000e-01   p_cons 9.417000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GDPD4.3_1623_10000_0.9623_0.9417_1.png
                gene_name: GDPD4
               theta_stop: 0.0098 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
GEMIN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 2.419009e-02	ci left: 7.153262e-01	ci right 7.329431e-01	k: 7242	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
GEMIN8   10000 perm   2 sec   (6462 perm/sec)   p_kst 5.170000e-02   p_cons 7.242000e-01   p_joint 1.614000e-01

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 1.708176e-02	ci left: 7.185026e-01	ci right 7.309320e-01	k: 14495	n:20000
KS ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
GEMIN8   20000 perm   4 sec   (5694 perm/sec)   p_kst 5.245000e-02   p_cons 7.247500e-01   p_joint 1.290000e-01

Joint ci ratio: 4.290641e-02	ci left: 2.129748e-01	ci right 2.223466e-01	k: 6529	n:30000
Cons ci ratio: 1.403295e-02	ci left: 7.171940e-01	ci right 7.273629e-01	k: 21669	n:30000
KS ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
GEMIN8   30000 perm   6 sec   (5406 perm/sec)   p_kst 5.186667e-02   p_cons 7.223000e-01   p_joint 2.176333e-01

Outputting figure to mutsig2_images.part000000000070/GEMIN8.3_741_30000_0.051867_0.7223_0.21763.png
                gene_name: GEMIN8
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 55 percent done.
GFI1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
KS ci ratio: 3.284314e-02	ci left: 5.777771e-01	ci right 5.971719e-01	k: 5875	n:10000
GFI1B   10000 perm   2 sec   (6146 perm/sec)   p_kst 5.875000e-01   p_cons 9.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GFI1B.3_1017_10000_0.5875_0.9413_1.png
                gene_name: GFI1B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
GFOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 2.335591e-02	ci left: 7.292631e-01	ci right 7.465981e-01	k: 7380	n:10000
GFOD2   10000 perm   2 sec   (5972 perm/sec)   p_kst 7.380000e-01   p_cons 2.285000e-01   p_joint 8.181000e-01

Outputting figure to mutsig2_images.part000000000070/GFOD2.3_1166_10000_0.738_0.2285_0.8181.png
                gene_name: GFOD2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 58 percent done.
GGT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
Cons ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
GGT7   10000 perm   2 sec   (5676 perm/sec)   p_kst 1.087000e-01   p_cons 1.888000e-01   p_joint 1.793000e-01

Joint ci ratio: 6.899993e-02	ci left: 1.341347e-01	ci right 1.437705e-01	k: 2778	n:20000
Cons ci ratio: 5.764331e-02	ci left: 1.823586e-01	ci right 1.932324e-01	k: 3755	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
GGT7   20000 perm   4 sec   (5016 perm/sec)   p_kst 1.077500e-01   p_cons 1.877500e-01   p_joint 1.389000e-01

Outputting figure to mutsig2_images.part000000000070/GGT7.3_2049_20000_0.10775_0.18775_0.1389.png
                gene_name: GGT7
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
GGTLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
GGTLC1   10000 perm   1 sec   (6743 perm/sec)   p_kst 4.900000e-03   p_cons 8.558000e-01   p_joint 9.300000e-03

Joint ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
Cons ci ratio: 1.178377e-02	ci left: 8.418849e-01	ci right 8.519141e-01	k: 16939	n:20000
KS ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
GGTLC1   20000 perm   3 sec   (6061 perm/sec)   p_kst 4.200000e-03   p_cons 8.469500e-01   p_joint 9.050000e-03

Joint ci ratio: 2.980342e-01	ci left: 4.879595e-03	ci right 6.618225e-03	k: 171	n:30000
Cons ci ratio: 9.567362e-03	ci left: 8.442914e-01	ci right 8.524410e-01	k: 25452	n:30000
KS ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
GGTLC1   30000 perm   5 sec   (5775 perm/sec)   p_kst 3.800000e-03   p_cons 8.484000e-01   p_joint 5.700000e-03

Joint ci ratio: 2.659978e-01	ci left: 4.682065e-03	ci right 6.141152e-03	k: 215	n:40000
Cons ci ratio: 7.840104e-03	ci left: 8.586570e-01	ci right 8.654403e-01	k: 34483	n:40000
KS ci ratio: 3.238249e-01	ci left: 3.059825e-03	ci right 4.264004e-03	k: 145	n:40000
GGTLC1   40000 perm   7 sec   (5555 perm/sec)   p_kst 3.625000e-03   p_cons 8.620750e-01   p_joint 5.375000e-03

Joint ci ratio: 1.927977e-01	ci left: 7.409151e-03	ci right 9.008737e-03	k: 409	n:50000
Cons ci ratio: 7.043423e-03	ci left: 8.579569e-01	ci right 8.640411e-01	k: 43051	n:50000
KS ci ratio: 2.916503e-01	ci left: 3.075488e-03	ci right 4.143422e-03	k: 179	n:50000
GGTLC1   50000 perm   9 sec   (5376 perm/sec)   p_kst 3.580000e-03   p_cons 8.610200e-01   p_joint 8.180000e-03

Joint ci ratio: 1.783915e-01	ci left: 7.270879e-03	ci right 8.710656e-03	k: 478	n:60000
Cons ci ratio: 6.423972e-03	ci left: 8.584414e-01	ci right 8.639903e-01	k: 51674	n:60000
KS ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
GGTLC1   60000 perm   11 sec   (5230 perm/sec)   p_kst 4.300000e-03   p_cons 8.612333e-01   p_joint 7.966667e-03

Joint ci ratio: 2.024270e-01	ci left: 4.789134e-03	ci right 5.881058e-03	k: 372	n:70000
Cons ci ratio: 5.957843e-03	ci left: 8.582280e-01	ci right 8.633706e-01	k: 60257	n:70000
KS ci ratio: 2.214296e-01	ci left: 3.963672e-03	ci right 4.963803e-03	k: 311	n:70000
GGTLC1   70000 perm   14 sec   (5092 perm/sec)   p_kst 4.442857e-03   p_cons 8.608143e-01   p_joint 5.314286e-03

Joint ci ratio: 1.910012e-01	ci left: 4.737178e-03	ci right 5.749212e-03	k: 418	n:80000
Cons ci ratio: 5.563481e-03	ci left: 8.588100e-01	ci right 8.636137e-01	k: 68898	n:80000
KS ci ratio: 2.099784e-01	ci left: 3.882072e-03	ci right 4.804442e-03	k: 346	n:80000
GGTLC1   80000 perm   16 sec   (4984 perm/sec)   p_kst 4.325000e-03   p_cons 8.612250e-01   p_joint 5.225000e-03

Joint ci ratio: 1.791962e-01	ci left: 4.814853e-03	ci right 5.773014e-03	k: 475	n:90000
Cons ci ratio: 5.268002e-03	ci left: 8.579061e-01	ci right 8.624485e-01	k: 77417	n:90000
KS ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
GGTLC1   90000 perm   18 sec   (4876 perm/sec)   p_kst 4.355556e-03   p_cons 8.601889e-01   p_joint 5.277778e-03

Joint ci ratio: 1.696604e-01	ci left: 4.859377e-03	ci right 5.769678e-03	k: 530	n:100000
Cons ci ratio: 4.980377e-03	ci left: 8.588605e-01	ci right 8.631585e-01	k: 86102	n:100000
KS ci ratio: 1.877563e-01	ci left: 3.932475e-03	ci right 4.756682e-03	k: 433	n:100000
GGTLC1   100000 perm   21 sec   (4788 perm/sec)   p_kst 4.330000e-03   p_cons 8.610200e-01   p_joint 5.300000e-03

Joint ci ratio: 1.630467e-01	ci left: 4.800954e-03	ci right 5.661813e-03	k: 574	n:110000
Cons ci ratio: 4.745746e-03	ci left: 8.591062e-01	ci right 8.632020e-01	k: 94728	n:110000
KS ci ratio: 1.806217e-01	ci left: 3.878481e-03	ci right 4.657103e-03	k: 468	n:110000
GGTLC1   110000 perm   23 sec   (4692 perm/sec)   p_kst 4.254545e-03   p_cons 8.611636e-01   p_joint 5.218182e-03

Joint ci ratio: 1.561396e-01	ci left: 4.816910e-03	ci right 5.640613e-03	k: 626	n:120000
Cons ci ratio: 4.788494e-03	ci left: 8.460902e-01	ci right 8.501597e-01	k: 101776	n:120000
KS ci ratio: 1.727012e-01	ci left: 3.905738e-03	ci right 4.651865e-03	k: 512	n:120000
GGTLC1   120000 perm   26 sec   (4610 perm/sec)   p_kst 4.266667e-03   p_cons 8.481333e-01   p_joint 5.216667e-03

Joint ci ratio: 1.502645e-01	ci left: 4.816252e-03	ci right 5.606066e-03	k: 676	n:130000
Cons ci ratio: 4.605074e-03	ci left: 8.459208e-01	ci right 8.498329e-01	k: 110225	n:130000
KS ci ratio: 1.664910e-01	ci left: 3.892563e-03	ci right 4.606752e-03	k: 551	n:130000
GGTLC1   130000 perm   29 sec   (4530 perm/sec)   p_kst 4.238462e-03   p_cons 8.478846e-01   p_joint 5.200000e-03

Joint ci ratio: 1.444085e-01	ci left: 4.857499e-03	ci right 5.620357e-03	k: 732	n:140000
Cons ci ratio: 4.425859e-03	ci left: 8.466757e-01	ci right 8.504384e-01	k: 118799	n:140000
KS ci ratio: 1.599574e-01	ci left: 3.929682e-03	ci right 4.619669e-03	k: 597	n:140000
GGTLC1   140000 perm   31 sec   (4451 perm/sec)   p_kst 4.264286e-03   p_cons 8.485643e-01   p_joint 5.228571e-03

Joint ci ratio: 1.393654e-01	ci left: 4.880892e-03	ci right 5.618431e-03	k: 786	n:150000
Cons ci ratio: 4.276520e-03	ci left: 8.466956e-01	ci right 8.503309e-01	k: 127278	n:150000
KS ci ratio: 1.543781e-01	ci left: 3.949505e-03	ci right 4.616547e-03	k: 641	n:150000
GGTLC1   150000 perm   34 sec   (4376 perm/sec)   p_kst 4.273333e-03   p_cons 8.485200e-01   p_joint 5.240000e-03

Joint ci ratio: 1.347358e-01	ci left: 4.907806e-03	ci right 5.622802e-03	k: 841	n:160000
Cons ci ratio: 4.137419e-03	ci left: 8.469598e-01	ci right 8.504775e-01	k: 135796	n:160000
KS ci ratio: 1.491265e-01	ci left: 3.979250e-03	ci right 4.626415e-03	k: 687	n:160000
GGTLC1   160000 perm   37 sec   (4300 perm/sec)   p_kst 4.293750e-03   p_cons 8.487250e-01   p_joint 5.256250e-03

Joint ci ratio: 1.306121e-01	ci left: 4.926219e-03	ci right 5.620229e-03	k: 895	n:170000
Cons ci ratio: 4.022730e-03	ci left: 8.464440e-01	ci right 8.498617e-01	k: 144187	n:170000
KS ci ratio: 1.448731e-01	ci left: 3.977483e-03	ci right 4.604313e-03	k: 728	n:170000
GGTLC1   170000 perm   40 sec   (4230 perm/sec)   p_kst 4.282353e-03   p_cons 8.481588e-01   p_joint 5.264706e-03

Joint ci ratio: 1.265776e-01	ci left: 4.964404e-03	ci right 5.640568e-03	k: 953	n:180000
Cons ci ratio: 3.910029e-03	ci left: 8.464502e-01	ci right 8.497719e-01	k: 152661	n:180000
KS ci ratio: 1.403250e-01	ci left: 4.013671e-03	ci right 4.624685e-03	k: 776	n:180000
GGTLC1   180000 perm   43 sec   (4162 perm/sec)   p_kst 4.311111e-03   p_cons 8.481167e-01   p_joint 5.294444e-03

Joint ci ratio: 1.235102e-01	ci left: 4.947846e-03	ci right 5.604229e-03	k: 1001	n:190000
Cons ci ratio: 3.806610e-03	ci left: 8.464359e-01	ci right 8.496693e-01	k: 161131	n:190000
KS ci ratio: 1.371856e-01	ci left: 3.985317e-03	ci right 4.577333e-03	k: 812	n:190000
GGTLC1   190000 perm   46 sec   (4095 perm/sec)   p_kst 4.273684e-03   p_cons 8.480579e-01   p_joint 5.268421e-03

Joint ci ratio: 1.197983e-01	ci left: 5.005878e-03	ci right 5.648588e-03	k: 1064	n:200000
Cons ci ratio: 3.708465e-03	ci left: 8.465998e-01	ci right 8.497501e-01	k: 169636	n:200000
KS ci ratio: 1.332274e-01	ci left: 4.022770e-03	ci right 4.601742e-03	k: 861	n:200000
GGTLC1   200000 perm   50 sec   (4030 perm/sec)   p_kst 4.305000e-03   p_cons 8.481800e-01   p_joint 5.320000e-03

Joint ci ratio: 1.165581e-01	ci left: 5.044778e-03	ci right 5.673757e-03	k: 1124	n:210000
Cons ci ratio: 3.618675e-03	ci left: 8.466677e-01	ci right 8.497418e-01	k: 178124	n:210000
KS ci ratio: 1.293793e-01	ci left: 4.070702e-03	ci right 4.638351e-03	k: 913	n:210000
GGTLC1   210000 perm   53 sec   (3965 perm/sec)   p_kst 4.347619e-03   p_cons 8.482095e-01   p_joint 5.352381e-03

Joint ci ratio: 1.145432e-01	ci left: 4.992025e-03	ci right 5.602939e-03	k: 1164	n:220000
Cons ci ratio: 3.540597e-03	ci left: 8.463286e-01	ci right 8.493349e-01	k: 186524	n:220000
KS ci ratio: 1.271756e-01	ci left: 4.026451e-03	ci right 4.577644e-03	k: 945	n:220000
GGTLC1   220000 perm   56 sec   (3904 perm/sec)   p_kst 4.295455e-03   p_cons 8.478364e-01   p_joint 5.290909e-03

Joint ci ratio: 9.011013e-02	ci left: 7.792971e-03	ci right 8.532548e-03	k: 1876	n:230000
Cons ci ratio: 3.460925e-03	ci left: 8.465000e-01	ci right 8.494390e-01	k: 195034	n:230000
KS ci ratio: 1.243802e-01	ci left: 4.032463e-03	ci right 4.571451e-03	k: 988	n:230000
GGTLC1   230000 perm   60 sec   (3845 perm/sec)   p_kst 4.295652e-03   p_cons 8.479739e-01   p_joint 8.156522e-03

Joint ci ratio: 8.840897e-02	ci left: 7.765636e-03	ci right 8.487986e-03	k: 1949	n:240000
Cons ci ratio: 3.388041e-03	ci left: 8.465323e-01	ci right 8.494093e-01	k: 203514	n:240000
KS ci ratio: 1.220587e-01	ci left: 4.017895e-03	ci right 4.544188e-03	k: 1026	n:240000
GGTLC1   240000 perm   63 sec   (3787 perm/sec)   p_kst 4.275000e-03   p_cons 8.479750e-01   p_joint 8.120833e-03

Joint ci ratio: 1.079797e-01	ci left: 4.960738e-03	ci right 5.530825e-03	k: 1310	n:250000
Cons ci ratio: 3.322252e-03	ci left: 8.463538e-01	ci right 8.491742e-01	k: 211942	n:250000
KS ci ratio: 1.202601e-01	ci left: 3.977416e-03	ci right 4.490183e-03	k: 1057	n:250000
GGTLC1   250000 perm   67 sec   (3733 perm/sec)   p_kst 4.228000e-03   p_cons 8.477680e-01   p_joint 5.240000e-03

Joint ci ratio: 1.054730e-01	ci left: 5.005786e-03	ci right 5.566867e-03	k: 1373	n:260000
Cons ci ratio: 3.260778e-03	ci left: 8.461394e-01	ci right 8.489067e-01	k: 220357	n:260000
KS ci ratio: 1.175669e-01	ci left: 4.007298e-03	ci right 4.511544e-03	k: 1106	n:260000
GGTLC1   260000 perm   71 sec   (3679 perm/sec)   p_kst 4.253846e-03   p_cons 8.475269e-01   p_joint 5.280769e-03

Joint ci ratio: 1.034229e-01	ci left: 5.018770e-03	ci right 5.569709e-03	k: 1428	n:270000
Cons ci ratio: 3.199239e-03	ci left: 8.462127e-01	ci right 8.489280e-01	k: 228845	n:270000
KS ci ratio: 1.152975e-01	ci left: 4.017097e-03	ci right 4.512155e-03	k: 1150	n:270000
GGTLC1   270000 perm   74 sec   (3627 perm/sec)   p_kst 4.259259e-03   p_cons 8.475741e-01   p_joint 5.288889e-03

Joint ci ratio: 8.195986e-02	ci left: 7.771308e-03	ci right 8.438934e-03	k: 2268	n:280000
Cons ci ratio: 3.141839e-03	ci left: 8.462168e-01	ci right 8.488832e-01	k: 237315	n:280000
KS ci ratio: 1.131547e-01	ci left: 4.026284e-03	ci right 4.512637e-03	k: 1194	n:280000
GGTLC1   280000 perm   78 sec   (3576 perm/sec)   p_kst 4.264286e-03   p_cons 8.475536e-01   p_joint 8.100000e-03

Joint ci ratio: 8.044875e-02	ci left: 7.793865e-03	ci right 8.450505e-03	k: 2354	n:290000
Cons ci ratio: 3.088328e-03	ci left: 8.461448e-01	ci right 8.487655e-01	k: 245763	n:290000
KS ci ratio: 1.109026e-01	ci left: 4.051680e-03	ci right 4.530723e-03	k: 1243	n:290000
GGTLC1   290000 perm   82 sec   (3528 perm/sec)   p_kst 4.286207e-03   p_cons 8.474586e-01   p_joint 8.117241e-03

Joint ci ratio: 7.905090e-02	ci left: 7.808487e-03	ci right 8.454402e-03	k: 2438	n:300000
Cons ci ratio: 3.037695e-03	ci left: 8.460580e-01	ci right 8.486353e-01	k: 254205	n:300000
KS ci ratio: 1.089916e-01	ci left: 4.059258e-03	ci right 4.530397e-03	k: 1287	n:300000
GGTLC1   300000 perm   86 sec   (3480 perm/sec)   p_kst 4.290000e-03   p_cons 8.473500e-01   p_joint 8.126667e-03

Joint ci ratio: 7.777011e-02	ci left: 7.812768e-03	ci right 8.448092e-03	k: 2519	n:310000
Cons ci ratio: 2.987683e-03	ci left: 8.461325e-01	ci right 8.486674e-01	k: 262695	n:310000
KS ci ratio: 1.072166e-01	ci left: 4.063274e-03	ci right 4.526713e-03	k: 1330	n:310000
GGTLC1   310000 perm   90 sec   (3434 perm/sec)   p_kst 4.290323e-03   p_cons 8.474032e-01   p_joint 8.125806e-03

Joint ci ratio: 7.644597e-02	ci left: 7.838320e-03	ci right 8.464386e-03	k: 2607	n:320000
Cons ci ratio: 2.938463e-03	ci left: 8.463438e-01	ci right 8.488374e-01	k: 271230	n:320000
KS ci ratio: 1.054485e-01	ci left: 4.073183e-03	ci right 4.529616e-03	k: 1375	n:320000
GGTLC1   320000 perm   94 sec   (3390 perm/sec)   p_kst 4.296875e-03   p_cons 8.475938e-01   p_joint 8.146875e-03

Joint ci ratio: 7.524354e-02	ci left: 7.850515e-03	ci right 8.467260e-03	k: 2691	n:330000
Cons ci ratio: 2.893528e-03	ci left: 8.463692e-01	ci right 8.488247e-01	k: 279708	n:330000
KS ci ratio: 1.039858e-01	ci left: 4.064839e-03	ci right 4.513632e-03	k: 1414	n:330000
GGTLC1   330000 perm   99 sec   (3346 perm/sec)   p_kst 4.284848e-03   p_cons 8.476000e-01   p_joint 8.154545e-03

Joint ci ratio: 7.425812e-02	ci left: 7.827420e-03	ci right 8.433950e-03	k: 2763	n:340000
Cons ci ratio: 2.848613e-03	ci left: 8.465734e-01	ci right 8.489913e-01	k: 288247	n:340000
KS ci ratio: 1.025116e-01	ci left: 4.062759e-03	ci right 4.504580e-03	k: 1455	n:340000
GGTLC1   340000 perm   103 sec   (3305 perm/sec)   p_kst 4.279412e-03   p_cons 8.477853e-01   p_joint 8.126471e-03

Joint ci ratio: 7.332345e-02	ci left: 7.802889e-03	ci right 8.399584e-03	k: 2834	n:350000
Cons ci ratio: 2.808147e-03	ci left: 8.465426e-01	ci right 8.489259e-01	k: 296708	n:350000
KS ci ratio: 1.013365e-01	ci left: 4.041344e-03	ci right 4.475498e-03	k: 1489	n:350000
GGTLC1   350000 perm   107 sec   (3265 perm/sec)   p_kst 4.254286e-03   p_cons 8.477371e-01   p_joint 8.097143e-03

Joint ci ratio: 7.223549e-02	ci left: 7.820686e-03	ci right 8.409495e-03	k: 2920	n:360000
Cons ci ratio: 2.768107e-03	ci left: 8.466308e-01	ci right 8.489803e-01	k: 305211	n:360000
KS ci ratio: 9.970935e-02	ci left: 4.061776e-03	ci right 4.490709e-03	k: 1538	n:360000
GGTLC1   360000 perm   112 sec   (3227 perm/sec)   p_kst 4.272222e-03   p_cons 8.478083e-01   p_joint 8.111111e-03

Outputting figure to mutsig2_images.part000000000070/GGTLC1.3_698_360000_0.0042722_0.84781_0.0081111.png
                gene_name: GGTLC1
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.0081 
     ci_joint_bounds_left: 0.0078 
    ci_joint_bounds_right: 0.0084 

Current progress: 62 percent done.
GIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
Cons ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
KS ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
GIF   10000 perm   2 sec   (6178 perm/sec)   p_kst 2.384000e-01   p_cons 8.692000e-01   p_joint 3.953000e-01

Outputting figure to mutsig2_images.part000000000070/GIF.3_1290_10000_0.2384_0.8692_0.3953.png
                gene_name: GIF
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 64 percent done.
GIMAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
GIMAP4   10000 perm   2 sec   (6095 perm/sec)   p_kst 1.784000e-01   p_cons 4.750000e-01   p_joint 2.553000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP4.3_998_10000_0.1784_0.475_0.2553.png
                gene_name: GIMAP4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 66 percent done.
GIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
Cons ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
KS ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
GIT2   10000 perm   2 sec   (5570 perm/sec)   p_kst 3.664000e-01   p_cons 3.486000e-01   p_joint 3.480000e-01

Outputting figure to mutsig2_images.part000000000070/GIT2.3_2398_10000_0.3664_0.3486_0.348.png
                gene_name: GIT2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 68 percent done.
GJA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
GJA5   10000 perm   1 sec   (6686 perm/sec)   p_kst 2.676000e-01   p_cons 1.201000e-01   p_joint 2.623000e-01

Joint ci ratio: 6.598237e-02	ci left: 1.450282e-01	ci right 1.549738e-01	k: 2999	n:20000
Cons ci ratio: 7.493679e-02	ci left: 1.158219e-01	ci right 1.248888e-01	k: 2406	n:20000
KS ci ratio: 4.560035e-02	ci left: 2.636078e-01	ci right 2.759592e-01	k: 5395	n:20000
GJA5   20000 perm   3 sec   (5808 perm/sec)   p_kst 2.697500e-01   p_cons 1.203000e-01   p_joint 1.499500e-01

Outputting figure to mutsig2_images.part000000000070/GJA5.3_1081_20000_0.26975_0.1203_0.14995.png
                gene_name: GJA5
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 70 percent done.
GJB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.510880e-02	ci left: 1.382511e-01	ci right 1.521563e-01	k: 1451	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
GJB1   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.927000e-01   p_cons 2.093000e-01   p_joint 1.451000e-01

Outputting figure to mutsig2_images.part000000000070/GJB1.3_856_10000_0.1927_0.2093_0.1451.png
                gene_name: GJB1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 72 percent done.
GJB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
KS ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
GJB5   10000 perm   2 sec   (6217 perm/sec)   p_kst 9.629000e-01   p_cons 6.960000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GJB5.3_826_10000_0.9629_0.696_1.png
                gene_name: GJB5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
GDF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
Cons ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
KS ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
GDF9   10000 perm   2 sec   (6385 perm/sec)   p_kst 7.993000e-01   p_cons 9.250000e-02   p_joint 1.334000e-01

Joint ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
Cons ci ratio: 8.510625e-02	ci left: 9.180406e-02	ci right 1.000139e-01	k: 1917	n:20000
KS ci ratio: 1.363183e-02	ci left: 7.996925e-01	ci right 8.107186e-01	k: 16105	n:20000
GDF9   20000 perm   4 sec   (5696 perm/sec)   p_kst 8.052500e-01   p_cons 9.585000e-02   p_joint 1.162000e-01

Outputting figure to mutsig2_images.part000000000070/GDF9.2_1373_20000_0.80525_0.09585_0.1162.png
                gene_name: GDF9
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 75 percent done.
GFAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
Cons ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
KS ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
GFAP   10000 perm   2 sec   (6150 perm/sec)   p_kst 6.478000e-01   p_cons 9.025000e-01   p_joint 7.756000e-01

Outputting figure to mutsig2_images.part000000000070/GFAP.2_1464_10000_0.6478_0.9025_0.7756.png
                gene_name: GFAP
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 77 percent done.
GFER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
Cons ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KS ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
GFER   10000 perm   1 sec   (6674 perm/sec)   p_kst 1.540000e-02   p_cons 6.432000e-01   p_joint 2.563000e-01

Joint ci ratio: 5.487967e-02	ci left: 1.976418e-01	ci right 2.088446e-01	k: 4064	n:20000
Cons ci ratio: 2.074743e-02	ci left: 6.342062e-01	ci right 6.475528e-01	k: 12818	n:20000
KS ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
GFER   20000 perm   3 sec   (5816 perm/sec)   p_kst 1.400000e-02   p_cons 6.409000e-01   p_joint 2.032000e-01

Joint ci ratio: 5.188193e-02	ci left: 1.557030e-01	ci right 1.640296e-01	k: 4795	n:30000
Cons ci ratio: 1.696132e-02	ci left: 6.348728e-01	ci right 6.457667e-01	k: 19210	n:30000
KS ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
GFER   30000 perm   5 sec   (5537 perm/sec)   p_kst 1.406667e-02   p_cons 6.403333e-01   p_joint 1.598333e-01

Joint ci ratio: 3.732988e-02	ci left: 2.120499e-01	ci right 2.201413e-01	k: 8643	n:40000
Cons ci ratio: 1.467098e-02	ci left: 6.361761e-01	ci right 6.456035e-01	k: 25636	n:40000
KS ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
GFER   40000 perm   7 sec   (5343 perm/sec)   p_kst 1.447500e-02   p_cons 6.409000e-01   p_joint 2.160750e-01

Joint ci ratio: 3.549225e-02	ci left: 1.926275e-01	ci right 1.996078e-01	k: 9805	n:50000
Cons ci ratio: 1.314556e-02	ci left: 6.358549e-01	ci right 6.442889e-01	k: 32004	n:50000
KS ci ratio: 1.429324e-01	ci left: 1.375982e-02	ci right 1.589705e-02	k: 740	n:50000
GFER   50000 perm   10 sec   (5175 perm/sec)   p_kst 1.480000e-02   p_cons 6.400800e-01   p_joint 1.961000e-01

Joint ci ratio: 3.666123e-02	ci left: 1.571078e-01	ci right 1.629917e-01	k: 9602	n:60000
Cons ci ratio: 1.199538e-02	ci left: 6.364115e-01	ci right 6.441082e-01	k: 38416	n:60000
KS ci ratio: 1.302710e-01	ci left: 1.389738e-02	ci right 1.584995e-02	k: 891	n:60000
GFER   60000 perm   12 sec   (5047 perm/sec)   p_kst 1.485000e-02   p_cons 6.402667e-01   p_joint 1.600333e-01

Joint ci ratio: 3.381158e-02	ci left: 1.583552e-01	ci right 1.638158e-01	k: 11275	n:70000
Cons ci ratio: 1.111305e-02	ci left: 6.363883e-01	ci right 6.435143e-01	k: 44797	n:70000
KS ci ratio: 1.205293e-01	ci left: 1.398779e-02	ci right 1.579561e-02	k: 1041	n:70000
GFER   70000 perm   14 sec   (4933 perm/sec)   p_kst 1.487143e-02   p_cons 6.399571e-01   p_joint 1.610714e-01

Joint ci ratio: 3.193838e-02	ci left: 1.559258e-01	ci right 1.609990e-01	k: 12676	n:80000
Cons ci ratio: 1.038505e-02	ci left: 6.370759e-01	ci right 6.437389e-01	k: 51233	n:80000
KS ci ratio: 1.131729e-01	ci left: 1.393818e-02	ci right 1.562228e-02	k: 1181	n:80000
GFER   80000 perm   17 sec   (4826 perm/sec)   p_kst 1.476250e-02   p_cons 6.404125e-01   p_joint 1.584500e-01

Joint ci ratio: 3.137733e-02	ci left: 1.454651e-01	ci right 1.501132e-01	k: 13300	n:90000
Cons ci ratio: 9.789508e-03	ci left: 6.373438e-01	ci right 6.436249e-01	k: 57644	n:90000
KS ci ratio: 1.067311e-01	ci left: 1.397794e-02	ci right 1.556467e-02	k: 1328	n:90000
GFER   90000 perm   19 sec   (4732 perm/sec)   p_kst 1.475556e-02   p_cons 6.404889e-01   p_joint 1.477778e-01

Joint ci ratio: 2.796926e-02	ci left: 1.618789e-01	ci right 1.664806e-01	k: 16417	n:100000
Cons ci ratio: 9.292172e-03	ci left: 6.372564e-01	ci right 6.432155e-01	k: 64024	n:100000
KS ci ratio: 1.020876e-01	ci left: 1.378770e-02	ci right 1.528065e-02	k: 1452	n:100000
GFER   100000 perm   22 sec   (4640 perm/sec)   p_kst 1.452000e-02   p_cons 6.402400e-01   p_joint 1.641700e-01

Joint ci ratio: 2.638396e-02	ci left: 1.649267e-01	ci right 1.693454e-01	k: 18384	n:110000
Cons ci ratio: 8.866110e-03	ci left: 6.370642e-01	ci right 6.427466e-01	k: 70390	n:110000
KS ci ratio: 9.709965e-02	ci left: 1.389058e-02	ci right 1.531700e-02	k: 1605	n:110000
GFER   110000 perm   24 sec   (4552 perm/sec)   p_kst 1.459091e-02   p_cons 6.399091e-01   p_joint 1.671273e-01

Outputting figure to mutsig2_images.part000000000070/GFER.2_630_110000_0.014591_0.63991_0.16713.png
                gene_name: GFER
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
GFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
GFM1   10000 perm   2 sec   (5867 perm/sec)   p_kst 6.776000e-01   p_cons 1.763000e-01   p_joint 9.019000e-01

Outputting figure to mutsig2_images.part000000000070/GFM1.2_2328_10000_0.6776_0.1763_0.9019.png
                gene_name: GFM1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 81 percent done.
GFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
GFM2   10000 perm   2 sec   (5756 perm/sec)   p_kst 4.141000e-01   p_cons 6.610000e-02   p_joint 1.223000e-01

Joint ci ratio: 5.351946e-02	ci left: 2.058081e-01	ci right 2.171759e-01	k: 4229	n:20000
Cons ci ratio: 1.056048e-01	ci left: 6.103661e-02	ci right 6.789068e-02	k: 1288	n:20000
KS ci ratio: 3.265727e-02	ci left: 4.118499e-01	ci right 4.255737e-01	k: 8374	n:20000
GFM2   20000 perm   4 sec   (5134 perm/sec)   p_kst 4.187000e-01   p_cons 6.440000e-02   p_joint 2.114500e-01

Joint ci ratio: 4.536314e-02	ci left: 1.947592e-01	ci right 2.038325e-01	k: 5978	n:30000
Cons ci ratio: 8.588289e-02	ci left: 6.213791e-02	ci right 6.774670e-02	k: 1947	n:30000
KS ci ratio: 2.659610e-02	ci left: 4.143730e-01	ci right 4.255758e-01	k: 12599	n:30000
GFM2   30000 perm   6 sec   (4869 perm/sec)   p_kst 4.199667e-01   p_cons 6.490000e-02   p_joint 1.992667e-01

Outputting figure to mutsig2_images.part000000000070/GFM2.2_2452_30000_0.41997_0.0649_0.19927.png
                gene_name: GFM2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 83 percent done.
GH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
Cons ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
KS ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
GH1   10000 perm   2 sec   (6629 perm/sec)   p_kst 9.272000e-01   p_cons 6.829000e-01   p_joint 9.272000e-01

Outputting figure to mutsig2_images.part000000000070/GH1.2_674_10000_0.9272_0.6829_0.9272.png
                gene_name: GH1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 85 percent done.
GIGYF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
Cons ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
KS ci ratio: 6.975563e-02	ci left: 2.315572e-01	ci right 2.483945e-01	k: 2399	n:10000
GIGYF1   10000 perm   2 sec   (5591 perm/sec)   p_kst 2.399000e-01   p_cons 1.216000e-01   p_joint 2.232000e-01

Joint ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
Cons ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
KS ci ratio: 4.861896e-02	ci left: 2.392997e-01	ci right 2.512744e-01	k: 4905	n:20000
GIGYF1   20000 perm   4 sec   (4977 perm/sec)   p_kst 2.452500e-01   p_cons 1.121500e-01   p_joint 9.090000e-02

Outputting figure to mutsig2_images.part000000000070/GIGYF1.2_3204_20000_0.24525_0.11215_0.0909.png
                gene_name: GIGYF1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 87 percent done.
GIMAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
GIMAP6   10000 perm   1 sec   (6682 perm/sec)   p_kst 9.700000e-03   p_cons 2.597000e-01   p_joint 1.047000e-01

Joint ci ratio: 9.033333e-02	ci left: 8.214981e-02	ci right 8.997103e-02	k: 1720	n:20000
Cons ci ratio: 4.788829e-02	ci left: 2.449032e-01	ci right 2.569693e-01	k: 5018	n:20000
KS ci ratio: 2.717025e-01	ci left: 8.900643e-03	ci right 1.174443e-02	k: 205	n:20000
GIMAP6   20000 perm   3 sec   (5853 perm/sec)   p_kst 1.025000e-02   p_cons 2.509000e-01   p_joint 8.600000e-02

Joint ci ratio: 8.576524e-02	ci left: 6.230123e-02	ci right 6.791668e-02	k: 1952	n:30000
Cons ci ratio: 3.897804e-02	ci left: 2.471940e-01	ci right 2.570541e-01	k: 7563	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
GIMAP6   30000 perm   5 sec   (5576 perm/sec)   p_kst 9.800000e-03   p_cons 2.521000e-01   p_joint 6.506667e-02

Joint ci ratio: 6.938382e-02	ci left: 7.133019e-02	ci right 7.648188e-02	k: 2955	n:40000
Cons ci ratio: 3.392770e-02	ci left: 2.459612e-01	ci right 2.544751e-01	k: 10008	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
GIMAP6   40000 perm   7 sec   (5383 perm/sec)   p_kst 1.030000e-02   p_cons 2.502000e-01   p_joint 7.387500e-02

Joint ci ratio: 6.878047e-02	ci left: 5.889807e-02	ci right 6.311308e-02	k: 3049	n:50000
Cons ci ratio: 3.040788e-02	ci left: 2.456520e-01	ci right 2.532571e-01	k: 12472	n:50000
KS ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
GIMAP6   50000 perm   10 sec   (5216 perm/sec)   p_kst 1.020000e-02   p_cons 2.494400e-01   p_joint 6.098000e-02

Joint ci ratio: 5.576723e-02	ci left: 7.395763e-02	ci right 7.821681e-02	k: 4564	n:60000
Cons ci ratio: 2.772221e-02	ci left: 2.464727e-01	ci right 2.534182e-01	k: 14996	n:60000
KS ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
GIMAP6   60000 perm   12 sec   (5090 perm/sec)   p_kst 1.036667e-02   p_cons 2.499333e-01   p_joint 7.606667e-02

Joint ci ratio: 4.906767e-02	ci left: 8.150321e-02	ci right 8.561710e-02	k: 5848	n:70000
Cons ci ratio: 2.559217e-02	ci left: 2.478054e-01	ci right 2.542438e-01	k: 17571	n:70000
KS ci ratio: 1.439282e-01	ci left: 9.730553e-03	ci right 1.125329e-02	k: 733	n:70000
GIMAP6   70000 perm   14 sec   (4958 perm/sec)   p_kst 1.047143e-02   p_cons 2.510143e-01   p_joint 8.354286e-02

Joint ci ratio: 5.410486e-02	ci left: 5.990660e-02	ci right 6.325028e-02	k: 4925	n:80000
Cons ci ratio: 2.393076e-02	ci left: 2.481477e-01	ci right 2.541704e-01	k: 20092	n:80000
KS ci ratio: 1.352744e-01	ci left: 9.684396e-03	ci right 1.110145e-02	k: 830	n:80000
GIMAP6   80000 perm   16 sec   (4856 perm/sec)   p_kst 1.037500e-02   p_cons 2.511500e-01   p_joint 6.156250e-02

Joint ci ratio: 5.111263e-02	ci left: 5.977435e-02	ci right 6.292066e-02	k: 5520	n:90000
Cons ci ratio: 2.259059e-02	ci left: 2.478488e-01	ci right 2.535229e-01	k: 22561	n:90000
KS ci ratio: 1.276674e-01	ci left: 9.704435e-03	ci right 1.103852e-02	k: 932	n:90000
GIMAP6   90000 perm   19 sec   (4749 perm/sec)   p_kst 1.035556e-02   p_cons 2.506778e-01   p_joint 6.133333e-02

Joint ci ratio: 4.846214e-02	ci left: 5.991984e-02	ci right 6.290566e-02	k: 6140	n:100000
Cons ci ratio: 2.142270e-02	ci left: 2.481455e-01	ci right 2.535290e-01	k: 25083	n:100000
KS ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
GIMAP6   100000 perm   21 sec   (4662 perm/sec)   p_kst 1.043000e-02   p_cons 2.508300e-01   p_joint 6.140000e-02

Joint ci ratio: 4.618537e-02	ci left: 6.004233e-02	ci right 6.288993e-02	k: 6760	n:110000
Cons ci ratio: 2.044226e-02	ci left: 2.479686e-01	ci right 2.530991e-01	k: 27558	n:110000
KS ci ratio: 1.150387e-01	ci left: 9.844204e-03	ci right 1.105454e-02	k: 1148	n:110000
GIMAP6   110000 perm   24 sec   (4566 perm/sec)   p_kst 1.043636e-02   p_cons 2.505273e-01   p_joint 6.145455e-02

Joint ci ratio: 3.748401e-02	ci left: 8.195725e-02	ci right 8.509625e-02	k: 10022	n:120000
Cons ci ratio: 1.959518e-02	ci left: 2.476350e-01	ci right 2.525437e-01	k: 30010	n:120000
KS ci ratio: 1.100727e-01	ci left: 9.882334e-03	ci right 1.104151e-02	k: 1254	n:120000
GIMAP6   120000 perm   27 sec   (4491 perm/sec)   p_kst 1.045000e-02   p_cons 2.500833e-01   p_joint 8.351667e-02

Joint ci ratio: 3.591118e-02	ci left: 8.245180e-02	ci right 8.547448e-02	k: 10914	n:130000
Cons ci ratio: 1.880174e-02	ci left: 2.482230e-01	ci right 2.529420e-01	k: 32575	n:130000
KS ci ratio: 1.053473e-01	ci left: 9.982971e-03	ci right 1.110056e-02	k: 1369	n:130000
GIMAP6   130000 perm   29 sec   (4408 perm/sec)   p_kst 1.053077e-02   p_cons 2.505769e-01   p_joint 8.395385e-02

Joint ci ratio: 3.460588e-02	ci left: 8.250243e-02	ci right 8.541483e-02	k: 11753	n:140000
Cons ci ratio: 1.812948e-02	ci left: 2.480681e-01	ci right 2.526137e-01	k: 35047	n:140000
KS ci ratio: 1.023737e-01	ci left: 9.833405e-03	ci right 1.090131e-02	k: 1450	n:140000
GIMAP6   140000 perm   32 sec   (4335 perm/sec)   p_kst 1.035714e-02   p_cons 2.503357e-01   p_joint 8.395000e-02

Joint ci ratio: 3.935459e-02	ci left: 6.081777e-02	ci right 6.326585e-02	k: 9305	n:150000
Cons ci ratio: 1.751798e-02	ci left: 2.480761e-01	ci right 2.524669e-01	k: 37540	n:150000
KS ci ratio: 9.879471e-02	ci left: 9.873244e-03	ci right 1.090581e-02	k: 1557	n:150000
GIMAP6   150000 perm   35 sec   (4259 perm/sec)   p_kst 1.038000e-02   p_cons 2.502667e-01   p_joint 6.203333e-02

Outputting figure to mutsig2_images.part000000000070/GIMAP6.2_887_150000_0.01038_0.25027_0.062033.png
                gene_name: GIMAP6
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.063 

Current progress: 89 percent done.
GIMAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
Cons ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GIMAP7   10000 perm   1 sec   (6971 perm/sec)   p_kst 1   p_cons 5.507000e-01   p_joint 5.507000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP7.2_907_10000_1_0.5507_0.5507.png
                gene_name: GIMAP7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 91 percent done.
GIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
Cons ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
KS ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
GIP   10000 perm   1 sec   (7160 perm/sec)   p_kst 6.883000e-01   p_cons 7.323000e-01   p_joint 9.700000e-01

Outputting figure to mutsig2_images.part000000000070/GIP.2_482_10000_0.6883_0.7323_0.97.png
                gene_name: GIP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
GIPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
Cons ci ratio: 1.533594e-02	ci left: 8.604938e-01	ci right 8.738915e-01	k: 8673	n:10000
KS ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
GIPC1   10000 perm   2 sec   (6408 perm/sec)   p_kst 7.608000e-01   p_cons 8.673000e-01   p_joint 9.870000e-01

Outputting figure to mutsig2_images.part000000000070/GIPC1.2_1026_10000_0.7608_0.8673_0.987.png
                gene_name: GIPC1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
GIPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
Cons ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
KS ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
GIPC2   10000 perm   2 sec   (6631 perm/sec)   p_kst 3.586000e-01   p_cons 2.318000e-01   p_joint 4.386000e-01

Outputting figure to mutsig2_images.part000000000070/GIPC2.2_972_10000_0.3586_0.2318_0.4386.png
                gene_name: GIPC2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 96 percent done.
GIPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
Cons ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
KS ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
GIPC3   10000 perm   1 sec   (6850 perm/sec)   p_kst 2.833000e-01   p_cons 6.649000e-01   p_joint 4.617000e-01

Outputting figure to mutsig2_images.part000000000070/GIPC3.2_963_10000_0.2833_0.6649_0.4617.png
                gene_name: GIPC3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 98 percent done.
GIPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
Cons ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
GIPR   10000 perm   2 sec   (6152 perm/sec)   p_kst 6.929000e-01   p_cons 4.083000e-01   p_joint 9.417000e-01

Outputting figure to mutsig2_images.part000000000070/GIPR.2_1453_10000_0.6929_0.4083_0.9417.png
                gene_name: GIPR
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000070
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 70 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 4421986: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000071> was used as the working directory.
Started at Wed Oct 24 17:48:12 2012
Results reported at Wed Oct 24 17:56:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000071.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000071.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 71  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000071.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    550.03 sec.
    Max Memory :      5339 MB
    Max Swap   :      7819 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
71
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 71
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 71: processing genes 6334 - 6423
Calculating significance of each gene.
Using projection method.
6334	GJB6	5.649399e-01
6335	GJB7	1
6336	GJC1	5.442521e-01
6337	GJC2	7.744297e-01
6338	GJC3	1
6339	GJD2	1
6340	GJD4	1.093677e-01
6341	GK	8.226352e-01
6342	GK2	3.307977e-01
6343	GK5	7.579963e-01
6344	GKAP1	5.652857e-01
6345	GKN1	2.463301e-02
6346	GKN2	6.742753e-02
6347	GLA	1.554391e-01
6348	GLB1	1
6349	GLB1L	9.237206e-01
6350	GLB1L2	1.747807e-01
6351	GLB1L3	9.468105e-01
6352	GLCCI1	7.060164e-02
6353	GLCE	6.841062e-01
6354	GLDC	8.605643e-01
6355	GLDN	8.877174e-01
6356	GLE1	8.278204e-01
6357	GLG1	9.970322e-01
6358	GLI1	8.966073e-02
6359	GLI2	9.972591e-01
6360	GLI3	9.941991e-01
6361	GLI4	6.127263e-01
6362	GLIPR1	2.013045e-03
6363	GLIPR1L1	1
6364	GLIPR1L2	7.917993e-01
6365	GLIPR2	2.311954e-01
6366	GLIS1	5.376897e-01
6367	GLIS2	7.804014e-01
6368	GLIS3	9.890363e-01
6369	GLMN	1
6370	GLO1	6.138320e-01
6371	GLOD4	1
6372	GLOD5	3.965359e-01
6373	GLP1R	9.077019e-01
6374	GLP2R	1.845150e-02
6375	GLRA1	2.020511e-01
6376	GLRA2	1.232186e-01
6377	GLRA3	6.921866e-01
6378	GLRA4	4.064701e-02
6379	GLRB	3.361358e-01
6380	GLRX	1
6381	GLRX2	5.497522e-01
6382	GLRX3	4.175545e-01
6383	GLRX5	1.709723e-01
6384	GLS	5.615244e-01
6385	GLS2	8.312922e-01
6386	GLT1D1	5.452270e-02
6387	GLT25D1	7.069419e-01
6388	GLT25D2	9.861466e-02
6389	GLT6D1	1
6390	GLT8D1	4.419988e-01
6391	GLT8D2	5.995786e-01
6392	GLTP	6.414233e-01
6393	GLTPD1	1
6394	GLTPD2	1
6395	GLTSCR2	8.524937e-01
6396	GLUD1	1
6397	GLUD2	1.460440e-01
6398	GLUL	1
6399	GLYAT	2.107579e-02
6400	GLYATL1	6.623586e-01
6401	GLYATL2	3.269724e-01
6402	GLYCTK	1
6403	GLYR1	1
6404	GM2A	1
6405	GMCL1	8.833253e-01
6406	GMDS	2.948433e-02
6407	GMEB1	3.915126e-01
6408	GMEB2	2.812461e-01
6409	GMFB	1
6410	GMFG	4.973141e-01
6411	GMIP	9.889384e-01
6412	GML	1
6413	GMNN	7.050547e-01
6414	GMPPA	6.203391e-02
6415	GMPPB	9.574337e-01
6416	GMPR	2.668725e-01
6417	GMPR2	1
6418	GMPS	2.270318e-01
6419	GNA11	9.100762e-01
6420	GNA12	9.108834e-01
6421	GNA13	8.485448e-02
6422	GNA14	1
6423	GNA15	1
Done

Running MutSig 2:
Scatter job 71: processing genes 6334 - 6423
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GLI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
KS ci ratio: 1.094871e-02	ci left: 9.224484e-01	ci right 9.327009e-01	k: 9277	n:10000
GLI3   10000 perm   3 sec   (3921 perm/sec)   p_kst 9.277000e-01   p_cons 9.203000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLI3.17_4799_10000_0.9277_0.9203_1.png
                gene_name: GLI3
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
GLI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
Cons ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
KS ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
GLI1   10000 perm   2 sec   (4569 perm/sec)   p_kst 6.771000e-01   p_cons 6.989000e-01   p_joint 8.264000e-01

Outputting figure to mutsig2_images.part000000000071/GLI1.13_3365_10000_0.6771_0.6989_0.8264.png
                gene_name: GLI1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 4 percent done.
GLDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
Cons ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
KS ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
GLDC   10000 perm   2 sec   (4413 perm/sec)   p_kst 5.089000e-01   p_cons 5.346000e-01   p_joint 7.169000e-01

Outputting figure to mutsig2_images.part000000000071/GLDC.11_3163_10000_0.5089_0.5346_0.7169.png
                gene_name: GLDC
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 5 percent done.
GLI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
Cons ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
KS ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
GLI2   10000 perm   2 sec   (4122 perm/sec)   p_kst 2.578000e-01   p_cons 3.433000e-01   p_joint 3.622000e-01

Outputting figure to mutsig2_images.part000000000071/GLI2.10_4813_10000_0.2578_0.3433_0.3622.png
                gene_name: GLI2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
GLRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
Cons ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
KS ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
GLRA2   10000 perm   2 sec   (5282 perm/sec)   p_kst 9.468000e-01   p_cons 3.425000e-01   p_joint 6.879000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA2.10_1467_10000_0.9468_0.3425_0.6879.png
                gene_name: GLRA2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 9 percent done.
GLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
Cons ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
KS ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
GLG1   10000 perm   2 sec   (4713 perm/sec)   p_kst 3.483000e-01   p_cons 2.960000e-01   p_joint 8.422000e-01

Outputting figure to mutsig2_images.part000000000071/GLG1.9_3724_10000_0.3483_0.296_0.8422.png
                gene_name: GLG1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 11 percent done.
GLP2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
Cons ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
KS ci ratio: 1.918961e-02	ci left: 7.988215e-01	ci right 8.143995e-01	k: 8067	n:10000
GLP2R   10000 perm   2 sec   (5277 perm/sec)   p_kst 8.067000e-01   p_cons 1.389000e-01   p_joint 4.224000e-01

Outputting figure to mutsig2_images.part000000000071/GLP2R.9_1714_10000_0.8067_0.1389_0.4224.png
                gene_name: GLP2R
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 13 percent done.
GMPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
Cons ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
KS ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
GMPS   10000 perm   2 sec   (5007 perm/sec)   p_kst 1.591000e-01   p_cons 1.878000e-01   p_joint 1.490000e-01

Outputting figure to mutsig2_images.part000000000071/GMPS.8_2146_10000_0.1591_0.1878_0.149.png
                gene_name: GMPS
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
GLB1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
GLB1L2   10000 perm   2 sec   (5323 perm/sec)   p_kst 1.277000e-01   p_cons 5.305000e-01   p_joint 2.316000e-01

Joint ci ratio: 5.850798e-02	ci left: 1.779097e-01	ci right 1.886826e-01	k: 3665	n:20000
Cons ci ratio: 2.550425e-02	ci left: 5.345638e-01	ci right 5.484242e-01	k: 10830	n:20000
KS ci ratio: 7.106269e-02	ci left: 1.273376e-01	ci right 1.367697e-01	k: 2640	n:20000
GLB1L2   20000 perm   4 sec   (4773 perm/sec)   p_kst 1.320000e-01   p_cons 5.415000e-01   p_joint 1.832500e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L2.7_1987_20000_0.132_0.5415_0.18325.png
                gene_name: GLB1L2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 16 percent done.
GLRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
Cons ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
KS ci ratio: 3.584875e-02	ci left: 5.346773e-01	ci right 5.542968e-01	k: 5445	n:10000
GLRA4   10000 perm   2 sec   (5868 perm/sec)   p_kst 5.445000e-01   p_cons 8.540000e-02   p_joint 3.074000e-01

Joint ci ratio: 5.138405e-02	ci left: 2.195748e-01	ci right 2.312052e-01	k: 4507	n:20000
Cons ci ratio: 9.059276e-02	ci left: 8.170910e-02	ci right 8.951187e-02	k: 1711	n:20000
KS ci ratio: 2.576990e-02	ci left: 5.294090e-01	ci right 5.432805e-01	k: 10727	n:20000
GLRA4   20000 perm   4 sec   (5177 perm/sec)   p_kst 5.363500e-01   p_cons 8.555000e-02   p_joint 2.253500e-01

Outputting figure to mutsig2_images.part000000000071/GLRA4.7_1385_20000_0.53635_0.08555_0.22535.png
                gene_name: GLRA4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
GLYAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
KS ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
GLYAT   10000 perm   2 sec   (5997 perm/sec)   p_kst 7.785000e-01   p_cons 2.461000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000071/GLYAT.7_915_10000_0.7785_0.2461_0.5536.png
                gene_name: GLYAT
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
GLYATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
GLYATL1   10000 perm   2 sec   (5622 perm/sec)   p_kst 3.346000e-01   p_cons 4.756000e-01   p_joint 3.781000e-01

Outputting figure to mutsig2_images.part000000000071/GLYATL1.7_1030_10000_0.3346_0.4756_0.3781.png
                gene_name: GLYATL1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 22 percent done.
GLCCI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
GLCCI1   10000 perm   2 sec   (5167 perm/sec)   p_kst 1.911000e-01   p_cons 4.550000e-02   p_joint 8.810000e-02

Joint ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
Cons ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
KS ci ratio: 5.421917e-02	ci left: 2.015513e-01	ci right 2.128339e-01	k: 4143	n:20000
GLCCI1   20000 perm   4 sec   (4689 perm/sec)   p_kst 2.071500e-01   p_cons 4.645000e-02   p_joint 8.275000e-02

Joint ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
Cons ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
KS ci ratio: 4.434644e-02	ci left: 2.020305e-01	ci right 2.112264e-01	k: 6198	n:30000
GLCCI1   30000 perm   7 sec   (4480 perm/sec)   p_kst 2.066000e-01   p_cons 4.633333e-02   p_joint 6.473333e-02

Joint ci ratio: 6.801457e-02	ci left: 7.406120e-02	ci right 7.930045e-02	k: 3066	n:40000
Cons ci ratio: 8.933422e-02	ci left: 4.386974e-02	ci right 4.799651e-02	k: 1836	n:40000
KS ci ratio: 3.852962e-02	ci left: 2.015988e-01	ci right 2.095439e-01	k: 8222	n:40000
GLCCI1   40000 perm   9 sec   (4350 perm/sec)   p_kst 2.055500e-01   p_cons 4.590000e-02   p_joint 7.665000e-02

Outputting figure to mutsig2_images.part000000000071/GLCCI1.6_1676_40000_0.20555_0.0459_0.07665.png
                gene_name: GLCCI1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 24 percent done.
GLIPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
Cons ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
KS ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
GLIPR1   10000 perm   2 sec   (5609 perm/sec)   p_kst 5.340000e-02   p_cons 4.876000e-01   p_joint 1.039000e-01

Joint ci ratio: 8.292399e-02	ci left: 9.631728e-02	ci right 1.046993e-01	k: 2009	n:20000
Cons ci ratio: 2.806231e-02	ci left: 4.868473e-01	ci right 5.007545e-01	k: 9876	n:20000
KS ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
GLIPR1   20000 perm   4 sec   (4985 perm/sec)   p_kst 5.575000e-02   p_cons 4.938000e-01   p_joint 1.004500e-01

Joint ci ratio: 7.073353e-02	ci left: 8.957236e-02	ci right 9.617340e-02	k: 2785	n:30000
Cons ci ratio: 2.294394e-02	ci left: 4.874602e-01	ci right 4.988078e-01	k: 14794	n:30000
KS ci ratio: 9.199587e-02	ci left: 5.443544e-02	ci right 5.971741e-02	k: 1711	n:30000
GLIPR1   30000 perm   6 sec   (4764 perm/sec)   p_kst 5.703333e-02   p_cons 4.931333e-01   p_joint 9.283333e-02

Outputting figure to mutsig2_images.part000000000071/GLIPR1.6_825_30000_0.057033_0.49313_0.092833.png
                gene_name: GLIPR1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 25 percent done.
GLT25D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
GLT25D2   10000 perm   2 sec   (5017 perm/sec)   p_kst 2.597000e-01   p_cons 9.350000e-02   p_joint 1.543000e-01

Joint ci ratio: 6.154084e-02	ci left: 1.634346e-01	ci right 1.738619e-01	k: 3372	n:20000
Cons ci ratio: 8.545162e-02	ci left: 9.111751e-02	ci right 9.930061e-02	k: 1903	n:20000
KS ci ratio: 4.729076e-02	ci left: 2.496152e-01	ci right 2.617559e-01	k: 5113	n:20000
GLT25D2   20000 perm   4 sec   (4520 perm/sec)   p_kst 2.556500e-01   p_cons 9.515000e-02   p_joint 1.686000e-01

Outputting figure to mutsig2_images.part000000000071/GLT25D2.6_1929_20000_0.25565_0.09515_0.1686.png
                gene_name: GLT25D2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 27 percent done.
GMDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
Cons ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
GMDS   10000 perm   2 sec   (5600 perm/sec)   p_kst 5.218000e-01   p_cons 2.121000e-01   p_joint 5.008000e-01

Outputting figure to mutsig2_images.part000000000071/GMDS.6_1163_10000_0.5218_0.2121_0.5008.png
                gene_name: GMDS
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
GLRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
Cons ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
GLRA1   10000 perm   2 sec   (5552 perm/sec)   p_kst 1.921000e-01   p_cons 3.332000e-01   p_joint 3.356000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA1.5_1410_10000_0.1921_0.3332_0.3356.png
                gene_name: GLRA1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
GLUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
Cons ci ratio: 2.106120e-02	ci left: 7.676987e-01	ci right 7.841402e-01	k: 7760	n:10000
KS ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
GLUD2   10000 perm   2 sec   (5824 perm/sec)   p_kst 4.881000e-01   p_cons 7.760000e-01   p_joint 6.597000e-01

Outputting figure to mutsig2_images.part000000000071/GLUD2.5_1681_10000_0.4881_0.776_0.6597.png
                gene_name: GLUD2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 33 percent done.
GMPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
Cons ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
KS ci ratio: 3.651132e-02	ci left: 5.255657e-01	ci right 5.452137e-01	k: 5354	n:10000
GMPPA   10000 perm   2 sec   (5725 perm/sec)   p_kst 5.354000e-01   p_cons 8.779000e-01   p_joint 6.888000e-01

Outputting figure to mutsig2_images.part000000000071/GMPPA.5_1311_10000_0.5354_0.8779_0.6888.png
                gene_name: GMPPA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 35 percent done.
GNA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
KS ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
GNA13   10000 perm   2 sec   (5291 perm/sec)   p_kst 7.103000e-01   p_cons 7.587000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GNA13.5_1150_10000_0.7103_0.7587_1.png
                gene_name: GNA13
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
GJC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.403275e-02	ci left: 7.179511e-01	ci right 7.355166e-01	k: 7268	n:10000
KS ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
GJC1   10000 perm   2 sec   (6199 perm/sec)   p_kst 6.704000e-01   p_cons 7.268000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GJC1.4_1195_10000_0.6704_0.7268_1.png
                gene_name: GJC1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
GK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.225041e-02	ci left: 5.866068e-01	ci right 6.059371e-01	k: 5963	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
GK2   10000 perm   2 sec   (5718 perm/sec)   p_kst 8.799000e-01   p_cons 5.963000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GK2.4_1666_10000_0.8799_0.5963_1.png
                gene_name: GK2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
GKN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
Cons ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
KS ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
GKN1   10000 perm   2 sec   (6511 perm/sec)   p_kst 4.278000e-01   p_cons 3.134000e-01   p_joint 4.750000e-01

Outputting figure to mutsig2_images.part000000000071/GKN1.4_624_10000_0.4278_0.3134_0.475.png
                gene_name: GKN1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 42 percent done.
GLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
KS ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
GLA   10000 perm   2 sec   (5897 perm/sec)   p_kst 7.888000e-01   p_cons 9.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLA.4_1318_10000_0.7888_0.9386_1.png
                gene_name: GLA
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
GLCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
Cons ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
KS ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
GLCE   10000 perm   2 sec   (5543 perm/sec)   p_kst 4.772000e-01   p_cons 7.332000e-01   p_joint 6.102000e-01

Outputting figure to mutsig2_images.part000000000071/GLCE.4_1866_10000_0.4772_0.7332_0.6102.png
                gene_name: GLCE
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 45 percent done.
GLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
GLE1   10000 perm   2 sec   (5472 perm/sec)   p_kst 4.220000e-01   p_cons 1.651000e-01   p_joint 3.316000e-01

Outputting figure to mutsig2_images.part000000000071/GLE1.4_2177_10000_0.422_0.1651_0.3316.png
                gene_name: GLE1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 47 percent done.
GLIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
Cons ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
GLIS1   10000 perm   2 sec   (5829 perm/sec)   p_kst 1.228000e-01   p_cons 1.842000e-01   p_joint 1.371000e-01

Joint ci ratio: 7.066249e-02	ci left: 1.286179e-01	ci right 1.380890e-01	k: 2666	n:20000
Cons ci ratio: 5.893157e-02	ci left: 1.757845e-01	ci right 1.865084e-01	k: 3622	n:20000
KS ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
GLIS1   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.220000e-01   p_cons 1.811000e-01   p_joint 1.333000e-01

Outputting figure to mutsig2_images.part000000000071/GLIS1.4_1895_20000_0.122_0.1811_0.1333.png
                gene_name: GLIS1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 49 percent done.
GLRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
Cons ci ratio: 2.600354e-02	ci left: 6.852655e-01	ci right 7.034211e-01	k: 6944	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
GLRB   10000 perm   2 sec   (6035 perm/sec)   p_kst 5.826000e-01   p_cons 6.944000e-01   p_joint 6.484000e-01

Outputting figure to mutsig2_images.part000000000071/GLRB.4_1530_10000_0.5826_0.6944_0.6484.png
                gene_name: GLRB
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 51 percent done.
GLT1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
KS ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
GLT1D1   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.951000e-01   p_cons 9.720000e-02   p_joint 1.859000e-01

Joint ci ratio: 5.359982e-02	ci left: 2.053131e-01	ci right 2.166711e-01	k: 4219	n:20000
Cons ci ratio: 8.280953e-02	ci left: 9.656264e-02	ci right 1.049538e-01	k: 2014	n:20000
KS ci ratio: 3.461529e-02	ci left: 3.838795e-01	ci right 3.974523e-01	k: 7813	n:20000
GLT1D1   20000 perm   4 sec   (5313 perm/sec)   p_kst 3.906500e-01   p_cons 1.007000e-01   p_joint 2.109500e-01

Outputting figure to mutsig2_images.part000000000071/GLT1D1.4_833_20000_0.39065_0.1007_0.21095.png
                gene_name: GLT1D1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 53 percent done.
GLYATL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
Cons ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
KS ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
GLYATL2   10000 perm   2 sec   (6028 perm/sec)   p_kst 9.293000e-01   p_cons 7.740000e-02   p_joint 3.853000e-01

Joint ci ratio: 4.383899e-02	ci left: 2.792967e-01	ci right 2.918657e-01	k: 5711	n:20000
Cons ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
KS ci ratio: 7.716935e-03	ci left: 9.244323e-01	ci right 9.316427e-01	k: 18562	n:20000
GLYATL2   20000 perm   4 sec   (5346 perm/sec)   p_kst 9.281000e-01   p_cons 8.630000e-02   p_joint 2.855500e-01

Outputting figure to mutsig2_images.part000000000071/GLYATL2.4_905_20000_0.9281_0.0863_0.28555.png
                gene_name: GLYATL2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 55 percent done.
GMEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
Cons ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
KS ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
GMEB1   10000 perm   2 sec   (5983 perm/sec)   p_kst 3.282000e-01   p_cons 8.053000e-01   p_joint 5.273000e-01

Outputting figure to mutsig2_images.part000000000071/GMEB1.4_1758_10000_0.3282_0.8053_0.5273.png
                gene_name: GMEB1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 56 percent done.
GMEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
Cons ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
KS ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
GMEB2   10000 perm   2 sec   (6036 perm/sec)   p_kst 8.140000e-02   p_cons 2.579000e-01   p_joint 1.593000e-01

Joint ci ratio: 6.917347e-02	ci left: 1.335435e-01	ci right 1.431619e-01	k: 2766	n:20000
Cons ci ratio: 4.684154e-02	ci left: 2.532366e-01	ci right 2.654334e-01	k: 5186	n:20000
KS ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
GMEB2   20000 perm   4 sec   (5386 perm/sec)   p_kst 7.485000e-02   p_cons 2.593000e-01   p_joint 1.383000e-01

Outputting figure to mutsig2_images.part000000000071/GMEB2.4_1629_20000_0.07485_0.2593_0.1383.png
                gene_name: GMEB2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 58 percent done.
GJD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
Cons ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
KS ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
GJD4   10000 perm   2 sec   (5679 perm/sec)   p_kst 2.024000e-01   p_cons 2.643000e-01   p_joint 1.736000e-01

Outputting figure to mutsig2_images.part000000000071/GJD4.3_1121_10000_0.2024_0.2643_0.1736.png
                gene_name: GJD4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
GKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
GKN2   10000 perm   2 sec   (6375 perm/sec)   p_kst 8.220000e-02   p_cons 2.206000e-01   p_joint 1.546000e-01

Joint ci ratio: 7.856213e-02	ci left: 1.063343e-01	ci right 1.150793e-01	k: 2213	n:20000
Cons ci ratio: 5.081680e-02	ci left: 2.234390e-01	ci right 2.351398e-01	k: 4585	n:20000
KS ci ratio: 9.216170e-02	ci left: 7.911446e-02	ci right 8.680729e-02	k: 1658	n:20000
GKN2   20000 perm   4 sec   (5489 perm/sec)   p_kst 8.290000e-02   p_cons 2.292500e-01   p_joint 1.106500e-01

Outputting figure to mutsig2_images.part000000000071/GKN2.3_579_20000_0.0829_0.22925_0.11065.png
                gene_name: GKN2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
GLB1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
Cons ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
GLB1L   10000 perm   2 sec   (5756 perm/sec)   p_kst 6.255000e-01   p_cons 2.704000e-01   p_joint 8.123000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L.3_2029_10000_0.6255_0.2704_0.8123.png
                gene_name: GLB1L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 64 percent done.
GLIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
GLIS3   10000 perm   2 sec   (5509 perm/sec)   p_kst 2.924000e-01   p_cons 3.190000e-01   p_joint 3.612000e-01

Outputting figure to mutsig2_images.part000000000071/GLIS3.3_2833_10000_0.2924_0.319_0.3612.png
                gene_name: GLIS3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 65 percent done.
GLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
GLS   10000 perm   2 sec   (5849 perm/sec)   p_kst 6.312000e-01   p_cons 6.845000e-01   p_joint 9.397000e-01

Outputting figure to mutsig2_images.part000000000071/GLS.3_2082_10000_0.6312_0.6845_0.9397.png
                gene_name: GLS
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 67 percent done.
GLUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
GLUD1   10000 perm   2 sec   (6038 perm/sec)   p_kst 3.215000e-01   p_cons 3.739000e-01   p_joint 3.096000e-01

Outputting figure to mutsig2_images.part000000000071/GLUD1.3_1729_10000_0.3215_0.3739_0.3096.png
                gene_name: GLUD1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 69 percent done.
GMIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
KS ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
GMIP   10000 perm   2 sec   (5478 perm/sec)   p_kst 1.380000e-02   p_cons 7.008000e-01   p_joint 7.100000e-02

Joint ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
Cons ci ratio: 1.806570e-02	ci left: 6.954562e-01	ci right 7.081850e-01	k: 14037	n:20000
KS ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
GMIP   20000 perm   4 sec   (4853 perm/sec)   p_kst 1.145000e-02   p_cons 7.018500e-01   p_joint 4.060000e-02

Joint ci ratio: 1.075985e-01	ci left: 4.008265e-02	ci right 4.467317e-02	k: 1270	n:30000
Cons ci ratio: 1.479243e-02	ci left: 6.954485e-01	ci right 7.058460e-01	k: 21020	n:30000
KS ci ratio: 2.077039e-01	ci left: 1.051398e-02	ci right 1.298193e-02	k: 351	n:30000
GMIP   30000 perm   6 sec   (4642 perm/sec)   p_kst 1.170000e-02   p_cons 7.006667e-01   p_joint 4.233333e-02

Joint ci ratio: 9.416439e-02	ci left: 3.956634e-02	ci right 4.350057e-02	k: 1660	n:40000
Cons ci ratio: 1.284478e-02	ci left: 6.950304e-01	ci right 7.040406e-01	k: 27982	n:40000
KS ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
GMIP   40000 perm   9 sec   (4510 perm/sec)   p_kst 1.157500e-02   p_cons 6.995500e-01   p_joint 4.150000e-02

Joint ci ratio: 7.860668e-02	ci left: 4.551452e-02	ci right 4.925825e-02	k: 2368	n:50000
Cons ci ratio: 1.144150e-02	ci left: 6.972466e-01	ci right 7.052900e-01	k: 35064	n:50000
KS ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
GMIP   50000 perm   11 sec   (4409 perm/sec)   p_kst 1.142000e-02   p_cons 7.012800e-01   p_joint 4.736000e-02

Joint ci ratio: 6.486075e-02	ci left: 5.551909e-02	ci right 5.925720e-02	k: 3442	n:60000
Cons ci ratio: 1.043582e-02	ci left: 6.979543e-01	ci right 7.052929e-01	k: 42098	n:60000
KS ci ratio: 1.480448e-01	ci left: 1.069435e-02	ci right 1.242005e-02	k: 692	n:60000
GMIP   60000 perm   14 sec   (4320 perm/sec)   p_kst 1.153333e-02   p_cons 7.016333e-01   p_joint 5.736667e-02

Joint ci ratio: 5.967083e-02	ci left: 5.633598e-02	ci right 5.981505e-02	k: 4064	n:70000
Cons ci ratio: 9.662144e-03	ci left: 6.982093e-01	ci right 7.050025e-01	k: 49113	n:70000
KS ci ratio: 1.361713e-01	ci left: 1.090275e-02	ci right 1.250954e-02	k: 818	n:70000
GMIP   70000 perm   17 sec   (4229 perm/sec)   p_kst 1.168571e-02   p_cons 7.016143e-01   p_joint 5.805714e-02

Joint ci ratio: 5.963038e-02	ci left: 4.971971e-02	ci right 5.278793e-02	k: 4099	n:80000
Cons ci ratio: 9.035457e-03	ci left: 6.985538e-01	ci right 7.049066e-01	k: 56139	n:80000
KS ci ratio: 1.277918e-01	ci left: 1.088162e-02	ci right 1.237911e-02	k: 929	n:80000
GMIP   80000 perm   19 sec   (4152 perm/sec)   p_kst 1.161250e-02   p_cons 7.017375e-01   p_joint 5.123750e-02

Joint ci ratio: 5.241975e-02	ci left: 5.696446e-02	ci right 6.004185e-02	k: 5264	n:90000
Cons ci ratio: 8.511115e-03	ci left: 6.991112e-01	ci right 7.050980e-01	k: 63190	n:90000
KS ci ratio: 1.207316e-01	ci left: 1.087833e-02	ci right 1.228675e-02	k: 1041	n:90000
GMIP   90000 perm   22 sec   (4082 perm/sec)   p_kst 1.156667e-02   p_cons 7.021111e-01   p_joint 5.848889e-02

Joint ci ratio: 5.126466e-02	ci left: 5.382213e-02	ci right 5.666374e-02	k: 5523	n:100000
Cons ci ratio: 8.079977e-03	ci left: 6.989739e-01	ci right 7.046544e-01	k: 70182	n:100000
KS ci ratio: 1.142757e-01	ci left: 1.096497e-02	ci right 1.230358e-02	k: 1162	n:100000
GMIP   100000 perm   25 sec   (4014 perm/sec)   p_kst 1.162000e-02   p_cons 7.018200e-01   p_joint 5.523000e-02

Joint ci ratio: 4.444894e-02	ci left: 6.456667e-02	ci right 6.751080e-02	k: 7263	n:110000
Cons ci ratio: 7.709013e-03	ci left: 6.988315e-01	ci right 7.042487e-01	k: 77170	n:110000
KS ci ratio: 1.084145e-01	ci left: 1.110828e-02	ci right 1.239038e-02	k: 1291	n:110000
GMIP   110000 perm   28 sec   (3951 perm/sec)   p_kst 1.173636e-02   p_cons 7.015455e-01   p_joint 6.602727e-02

Joint ci ratio: 4.462878e-02	ci left: 5.905860e-02	ci right 6.176269e-02	k: 7248	n:120000
Cons ci ratio: 7.388233e-03	ci left: 6.985260e-01	ci right 7.037143e-01	k: 84135	n:120000
KS ci ratio: 1.046839e-01	ci left: 1.094500e-02	ci right 1.216211e-02	k: 1385	n:120000
GMIP   120000 perm   31 sec   (3890 perm/sec)   p_kst 1.154167e-02   p_cons 7.011250e-01   p_joint 6.040000e-02

Joint ci ratio: 4.380899e-02	ci left: 5.674302e-02	ci right 5.929213e-02	k: 7541	n:130000
Cons ci ratio: 7.107671e-03	ci left: 6.980789e-01	ci right 7.030660e-01	k: 91075	n:130000
KS ci ratio: 1.005263e-01	ci left: 1.097999e-02	ci right 1.214964e-02	k: 1502	n:130000
GMIP   130000 perm   34 sec   (3830 perm/sec)   p_kst 1.155385e-02   p_cons 7.005769e-01   p_joint 5.800769e-02

Joint ci ratio: 4.477144e-02	ci left: 5.075082e-02	ci right 5.308207e-02	k: 7267	n:140000
Cons ci ratio: 6.855745e-03	ci left: 6.977637e-01	ci right 7.025709e-01	k: 98024	n:140000
KS ci ratio: 9.673714e-02	ci left: 1.103173e-02	ci right 1.216007e-02	k: 1622	n:140000
GMIP   140000 perm   37 sec   (3772 perm/sec)   p_kst 1.158571e-02   p_cons 7.001714e-01   p_joint 5.190714e-02

Outputting figure to mutsig2_images.part000000000071/GMIP.3_2997_140000_0.011586_0.70017_0.051907.png
                gene_name: GMIP
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.053 

Current progress: 71 percent done.
GML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
GML   10000 perm   1 sec   (6682 perm/sec)   p_kst 6.404000e-01   p_cons 2.422000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GML.3_489_10000_0.6404_0.2422_1.png
                gene_name: GML
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
GMPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
Cons ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
KS ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
GMPR   10000 perm   2 sec   (6212 perm/sec)   p_kst 5.366000e-01   p_cons 3.260000e-02   p_joint 1.556000e-01

Joint ci ratio: 6.205046e-02	ci left: 1.611634e-01	ci right 1.715338e-01	k: 3326	n:20000
Cons ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
KS ci ratio: 2.551452e-02	ci left: 5.343636e-01	ci right 5.482244e-01	k: 10826	n:20000
GMPR   20000 perm   4 sec   (5504 perm/sec)   p_kst 5.413000e-01   p_cons 3.180000e-02   p_joint 1.663000e-01

Joint ci ratio: 5.080781e-02	ci left: 1.613435e-01	ci right 1.697880e-01	k: 4966	n:30000
Cons ci ratio: 1.260431e-01	ci left: 2.926149e-02	ci right 3.322998e-02	k: 936	n:30000
KS ci ratio: 2.074365e-02	ci left: 5.377761e-01	ci right 5.490821e-01	k: 16303	n:30000
GMPR   30000 perm   6 sec   (5241 perm/sec)   p_kst 5.434333e-01   p_cons 3.120000e-02   p_joint 1.655333e-01

Joint ci ratio: 2.975689e-02	ci left: 2.980503e-01	ci right 3.070784e-01	k: 12102	n:40000
Cons ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
KS ci ratio: 1.792796e-02	ci left: 5.395539e-01	ci right 5.493396e-01	k: 21778	n:40000
GMPR   40000 perm   8 sec   (5096 perm/sec)   p_kst 5.444500e-01   p_cons 3.072500e-02   p_joint 3.025500e-01

Joint ci ratio: 2.655591e-02	ci left: 2.994715e-01	ci right 3.075513e-01	k: 15175	n:50000
Cons ci ratio: 9.840553e-02	ci left: 2.924431e-02	ci right 3.229050e-02	k: 1537	n:50000
KS ci ratio: 1.602146e-02	ci left: 5.405026e-01	ci right 5.492522e-01	k: 27244	n:50000
GMPR   50000 perm   10 sec   (4970 perm/sec)   p_kst 5.448800e-01   p_cons 3.074000e-02   p_joint 3.035000e-01

Outputting figure to mutsig2_images.part000000000071/GMPR.3_1074_50000_0.54488_0.03074_0.3035.png
                gene_name: GMPR
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
GJD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
Cons ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
KS ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
GJD2   10000 perm   2 sec   (6561 perm/sec)   p_kst 3.880000e-01   p_cons 9.219000e-01   p_joint 7.273000e-01

Outputting figure to mutsig2_images.part000000000071/GJD2.2_974_10000_0.388_0.9219_0.7273.png
                gene_name: GJD2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 76 percent done.
GK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
Cons ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
KS ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
GK   10000 perm   2 sec   (6360 perm/sec)   p_kst 5.762000e-01   p_cons 3.526000e-01   p_joint 8.912000e-01

Outputting figure to mutsig2_images.part000000000071/GK.2_1764_10000_0.5762_0.3526_0.8912.png
                gene_name: GK
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 78 percent done.
GK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
Cons ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
KS ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
GK5   10000 perm   2 sec   (6375 perm/sec)   p_kst 5.274000e-01   p_cons 7.732000e-01   p_joint 7.110000e-01

Outputting figure to mutsig2_images.part000000000071/GK5.2_1654_10000_0.5274_0.7732_0.711.png
                gene_name: GK5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 80 percent done.
GKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
Cons ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
KS ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
GKAP1   10000 perm   2 sec   (6473 perm/sec)   p_kst 6.948000e-01   p_cons 5.635000e-01   p_joint 5.572000e-01

Outputting figure to mutsig2_images.part000000000071/GKAP1.2_1145_10000_0.6948_0.5635_0.5572.png
                gene_name: GKAP1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 82 percent done.
GLDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912193e-02	ci left: 7.999380e-01	ci right 8.154824e-01	k: 8078	n:10000
Cons ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KS ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
GLDN   10000 perm   2 sec   (6337 perm/sec)   p_kst 4.796000e-01   p_cons 8.450000e-02   p_joint 8.078000e-01

Joint ci ratio: 1.133039e-02	ci left: 8.519194e-01	ci right 8.616767e-01	k: 17137	n:20000
Cons ci ratio: 9.651026e-02	ci left: 7.251086e-02	ci right 7.991291e-02	k: 1523	n:20000
KS ci ratio: 2.914740e-02	ci left: 4.679083e-01	ci right 4.817990e-01	k: 9497	n:20000
GLDN   20000 perm   4 sec   (5586 perm/sec)   p_kst 4.748500e-01   p_cons 7.615000e-02   p_joint 8.568500e-01

Outputting figure to mutsig2_images.part000000000071/GLDN.2_1696_20000_0.47485_0.07615_0.85685.png
                gene_name: GLDN
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 84 percent done.
GLI4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260105e-02	ci left: 9.005222e-01	ci right 9.120399e-01	k: 9064	n:10000
Cons ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
KS ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
GLI4   10000 perm   2 sec   (6586 perm/sec)   p_kst 7.430000e-01   p_cons 5.189000e-01   p_joint 9.064000e-01

Outputting figure to mutsig2_images.part000000000071/GLI4.2_1143_10000_0.743_0.5189_0.9064.png
                gene_name: GLI4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 85 percent done.
GLIPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
Cons ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
KS ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
GLIPR2   10000 perm   1 sec   (6728 perm/sec)   p_kst 8.308000e-01   p_cons 2.411000e-01   p_joint 8.314000e-01

Outputting figure to mutsig2_images.part000000000071/GLIPR2.2_485_10000_0.8308_0.2411_0.8314.png
                gene_name: GLIPR2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 87 percent done.
GLRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
Cons ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KS ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
GLRA3   10000 perm   2 sec   (6398 perm/sec)   p_kst 4.706000e-01   p_cons 2.003000e-01   p_joint 9.671000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA3.2_1435_10000_0.4706_0.2003_0.9671.png
                gene_name: GLRA3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
GLRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
Cons ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
KS ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
GLRX3   10000 perm   2 sec   (6376 perm/sec)   p_kst 7.656000e-01   p_cons 1.620000e-01   p_joint 8.843000e-01

Outputting figure to mutsig2_images.part000000000071/GLRX3.2_1052_10000_0.7656_0.162_0.8843.png
                gene_name: GLRX3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 91 percent done.
GLS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GLS2   10000 perm   2 sec   (6267 perm/sec)   p_kst 1   p_cons 9.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLS2.2_1881_10000_1_0.9238_1.png
                gene_name: GLS2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
GLT25D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
Cons ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
GLT25D1   10000 perm   2 sec   (5952 perm/sec)   p_kst 7.633000e-01   p_cons 2.845000e-01   p_joint 7.959000e-01

Outputting figure to mutsig2_images.part000000000071/GLT25D1.2_1917_10000_0.7633_0.2845_0.7959.png
                gene_name: GLT25D1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 95 percent done.
GLT8D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.010923e-02	ci left: 6.193450e-01	ci right 6.383799e-01	k: 6289	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
GLT8D1   10000 perm   2 sec   (6645 perm/sec)   p_kst 7.510000e-02   p_cons 6.289000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.124814e-02	ci left: 6.231147e-01	ci right 6.365475e-01	k: 12597	n:20000
KS ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
GLT8D1   20000 perm   3 sec   (5855 perm/sec)   p_kst 7.125000e-02   p_cons 6.298500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.731398e-02	ci left: 6.253100e-01	ci right 6.362647e-01	k: 18924	n:30000
KS ci ratio: 8.211420e-02	ci left: 6.769370e-02	ci right 7.352312e-02	k: 2117	n:30000
GLT8D1   30000 perm   5 sec   (5539 perm/sec)   p_kst 7.056667e-02   p_cons 6.308000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLT8D1.2_1152_30000_0.070567_0.6308_1.png
                gene_name: GLT8D1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GLT8D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
Cons ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
KS ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
GLT8D2   10000 perm   2 sec   (6585 perm/sec)   p_kst 2.738000e-01   p_cons 3.637000e-01   p_joint 3.146000e-01

Outputting figure to mutsig2_images.part000000000071/GLT8D2.2_1086_10000_0.2738_0.3637_0.3146.png
                gene_name: GLT8D2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 98 percent done.
GLUL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
Cons ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
KS ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
GLUL   10000 perm   1 sec   (6692 perm/sec)   p_kst 4.731000e-01   p_cons 6.478000e-01   p_joint 7.771000e-01

Outputting figure to mutsig2_images.part000000000071/GLUL.2_1146_10000_0.4731_0.6478_0.7771.png
                gene_name: GLUL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000071
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 71 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4421990: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000072> was used as the working directory.
Started at Wed Oct 24 17:48:38 2012
Results reported at Wed Oct 24 18:04:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000072.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000072.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 72  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000072.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    685.21 sec.
    Max Memory :      5370 MB
    Max Swap   :      7699 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
72
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 72
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 72: processing genes 6424 - 6514
Calculating significance of each gene.
Using projection method.
6424	GNAI1	2.247749e-01
6425	GNAI2	1
6426	GNAI3	8.368459e-01
6427	GNAL	1
6428	GNAO1	1
6429	GNAQ	6.139710e-01
6430	GNAS	9.944692e-01
6431	GNAT1	8.008169e-01
6432	GNAT2	1
6433	GNAT3	7.520898e-01
6434	GNAZ	8.122988e-01
6435	GNB1	7.075146e-01
6436	GNB1L	7.769752e-01
6437	GNB2	1
6438	GNB2L1	4.847559e-01
6439	GNB3	6.429009e-01
6440	GNB4	8.024103e-01
6441	GNB5	7.470888e-01
6442	GNE	9.878791e-01
6443	GNG10	1
6444	GNG11	4.720710e-03
6445	GNG12	5.463610e-02
6446	GNG13	1
6447	GNG2	3.735808e-04
6448	GNG3	1.023476e-01
6449	GNG4	3.609746e-01
6450	GNG5	1
6451	GNG7	1
6452	GNG8	1
6453	GNGT1	6.541610e-02
6454	GNGT2	3.798495e-02
6455	GNL1	7.808363e-01
6456	GNL2	1.859528e-01
6457	GNL3	1
6458	GNL3L	9.138660e-01
6459	GNLY	1
6460	GNMT	1
6461	GNPAT	1
6462	GNPDA1	7.377776e-01
6463	GNPDA2	4.485146e-01
6464	GNPNAT1	1
6465	GNPTAB	9.468350e-01
6466	GNPTG	1
6467	GNRH1	1
6468	GNRH2	1
6469	GNRHR	3.239322e-01
6470	GNS	1
6471	GOLGA1	6.925783e-01
6472	GOLGA2	1
6473	GOLGA2B	3.903689e-02
6474	GOLGA3	1
6475	GOLGA4	9.999407e-01
6476	GOLGA5	1
6477	GOLGA6A	6.684198e-01
6478	GOLGA6C	2.115183e-01
6479	GOLGA6D	7.091289e-01
6480	GOLGA7	1
6481	GOLGA7B	5.635762e-01
6482	GOLGB1	9.943286e-01
6483	GOLIM4	3.873406e-01
6484	GOLM1	8.609573e-01
6485	GOLPH3	4.479780e-01
6486	GOLPH3L	5.316663e-01
6487	GOLT1A	5.217238e-01
6488	GOLT1B	1.185965e-01
6489	GON4L	9.952843e-01
6490	GOPC	7.966768e-01
6491	GORAB	7.801100e-01
6492	GORASP1	1
6493	GORASP2	6.322354e-01
6494	GOSR1	1
6495	GOSR2	6.262495e-01
6496	GOT1	7.599276e-01
6497	GOT1L1	4.620633e-02
6498	GOT2	3.205988e-01
6499	GP2	6.941600e-01
6500	GP5	1
6501	GP6	8.105420e-01
6502	GP9	1
6503	GPA33	4.156452e-02
6504	GPAA1	1
6505	GPAM	8.363167e-01
6506	GPAT2	7.718290e-01
6507	GPATCH1	9.197481e-01
6508	GPATCH2	7.292812e-01
6509	GPATCH3	1
6510	GPATCH4	7.478361e-01
6511	GPATCH8	1
6512	GPBP1	8.537123e-01
6513	GPBP1L1	1.979202e-01
6514	GPC1	8.646531e-01
Done

Running MutSig 2:
Scatter job 72: processing genes 6424 - 6514
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GOLIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
Cons ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
KS ci ratio: 5.416871e-02	ci left: 3.342886e-01	ci right 3.530026e-01	k: 3436	n:10000
GOLIM4   10000 perm   3 sec   (3534 perm/sec)   p_kst 3.436000e-01   p_cons 8.518000e-01   p_joint 4.818000e-01

Outputting figure to mutsig2_images.part000000000072/GOLIM4.12_2155_10000_0.3436_0.8518_0.4818.png
                gene_name: GOLIM4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 2 percent done.
GOLGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
GOLGB1   10000 perm   3 sec   (2965 perm/sec)   p_kst 2.311000e-01   p_cons 6.382000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGB1.10_9864_10000_0.2311_0.6382_0.4014.png
                gene_name: GOLGB1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 4 percent done.
GOLGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
Cons ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
KS ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
GOLGA3   10000 perm   2 sec   (4964 perm/sec)   p_kst 2.130000e-01   p_cons 2.608000e-01   p_joint 2.124000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA3.9_4727_10000_0.213_0.2608_0.2124.png
                gene_name: GOLGA3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 6 percent done.
GP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
Cons ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
KS ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
GP2   10000 perm   2 sec   (5257 perm/sec)   p_kst 5.980000e-01   p_cons 2.558000e-01   p_joint 3.768000e-01

Outputting figure to mutsig2_images.part000000000072/GP2.9_1658_10000_0.598_0.2558_0.3768.png
                gene_name: GP2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 8 percent done.
GNAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.065336e-02	ci left: 6.109050e-01	ci right 6.300247e-01	k: 6205	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
GNAS   10000 perm   2 sec   (5341 perm/sec)   p_kst 5.236000e-01   p_cons 4.533000e-01   p_joint 6.205000e-01

Outputting figure to mutsig2_images.part000000000072/GNAS.7_4054_10000_0.5236_0.4533_0.6205.png
                gene_name: GNAS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 10 percent done.
GOLGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
Cons ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
KS ci ratio: 1.951498e-02	ci left: 7.934435e-01	ci right 8.091806e-01	k: 8014	n:10000
GOLGA4   10000 perm   2 sec   (4686 perm/sec)   p_kst 8.014000e-01   p_cons 2.185000e-01   p_joint 5.523000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA4.7_6883_10000_0.8014_0.2185_0.5523.png
                gene_name: GOLGA4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 12 percent done.
GON4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
Cons ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
KS ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
GON4L   10000 perm   3 sec   (3757 perm/sec)   p_kst 7.596000e-01   p_cons 2.610000e-02   p_joint 1.873000e-01

Joint ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
Cons ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
KS ci ratio: 1.547824e-02	ci left: 7.563377e-01	ci right 7.681860e-01	k: 15246	n:20000
GON4L   20000 perm   6 sec   (3561 perm/sec)   p_kst 7.623000e-01   p_cons 2.725000e-02   p_joint 1.134000e-01

Joint ci ratio: 6.247658e-02	ci left: 1.123641e-01	ci right 1.196437e-01	k: 3479	n:30000
Cons ci ratio: 1.390698e-01	ci left: 2.400317e-02	ci right 2.762279e-02	k: 773	n:30000
KS ci ratio: 1.273904e-02	ci left: 7.545214e-01	ci right 7.642283e-01	k: 22782	n:30000
GON4L   30000 perm   9 sec   (3471 perm/sec)   p_kst 7.594000e-01   p_cons 2.576667e-02   p_joint 1.159667e-01

Joint ci ratio: 5.858000e-02	ci left: 9.771814e-02	ci right 1.036400e-01	k: 4026	n:40000
Cons ci ratio: 1.211635e-01	ci left: 2.395294e-02	ci right 2.706647e-02	k: 1019	n:40000
KS ci ratio: 1.131828e-02	ci left: 7.456506e-01	ci right 7.541631e-01	k: 29997	n:40000
GON4L   40000 perm   12 sec   (3406 perm/sec)   p_kst 7.499250e-01   p_cons 2.547500e-02   p_joint 1.006500e-01

Joint ci ratio: 5.323907e-02	ci left: 9.520974e-02	ci right 1.004371e-01	k: 4890	n:50000
Cons ci ratio: 1.080249e-01	ci left: 2.427217e-02	ci right 2.706327e-02	k: 1282	n:50000
KS ci ratio: 1.012136e-02	ci left: 7.461801e-01	ci right 7.537909e-01	k: 37500	n:50000
GON4L   50000 perm   15 sec   (3352 perm/sec)   p_kst 7.500000e-01   p_cons 2.564000e-02   p_joint 9.780000e-02

Joint ci ratio: 4.749247e-02	ci left: 9.953984e-02	ci right 1.043987e-01	k: 6117	n:60000
Cons ci ratio: 9.295967e-02	ci left: 2.744371e-02	ci right 3.013546e-02	k: 1726	n:60000
KS ci ratio: 9.237450e-03	ci left: 7.465986e-01	ci right 7.535439e-01	k: 45005	n:60000
GON4L   60000 perm   18 sec   (3305 perm/sec)   p_kst 7.500833e-01   p_cons 2.876667e-02   p_joint 1.019500e-01

Outputting figure to mutsig2_images.part000000000072/GON4L.7_6964_60000_0.75008_0.028767_0.10195.png
                gene_name: GON4L
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.10 

Current progress: 14 percent done.
GPATCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
Cons ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
KS ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
GPATCH2   10000 perm   2 sec   (4996 perm/sec)   p_kst 9.840000e-02   p_cons 1.433000e-01   p_joint 1.112000e-01

Joint ci ratio: 8.011688e-02	ci left: 1.026010e-01	ci right 1.112137e-01	k: 2137	n:20000
Cons ci ratio: 6.766256e-02	ci left: 1.388162e-01	ci right 1.485876e-01	k: 2873	n:20000
KS ci ratio: 8.550126e-02	ci left: 9.101944e-02	ci right 9.919871e-02	k: 1901	n:20000
GPATCH2   20000 perm   4 sec   (4734 perm/sec)   p_kst 9.505000e-02   p_cons 1.436500e-01   p_joint 1.068500e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH2.7_1627_20000_0.09505_0.14365_0.10685.png
                gene_name: GPATCH2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 16 percent done.
GPATCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
Cons ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
KS ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
GPATCH8   10000 perm   2 sec   (4642 perm/sec)   p_kst 5.666000e-01   p_cons 3.992000e-01   p_joint 6.909000e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH8.6_4541_10000_0.5666_0.3992_0.6909.png
                gene_name: GPATCH8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 18 percent done.
GNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
Cons ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
KS ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
GNL1   10000 perm   2 sec   (5260 perm/sec)   p_kst 3.036000e-01   p_cons 3.242000e-01   p_joint 3.227000e-01

Outputting figure to mutsig2_images.part000000000072/GNL1.5_1872_10000_0.3036_0.3242_0.3227.png
                gene_name: GNL1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
GNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
Cons ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
KS ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
GNL2   10000 perm   2 sec   (4890 perm/sec)   p_kst 7.290000e-01   p_cons 3.479000e-01   p_joint 7.942000e-01

Outputting figure to mutsig2_images.part000000000072/GNL2.5_2260_10000_0.729_0.3479_0.7942.png
                gene_name: GNL2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 22 percent done.
GOT1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
GOT1L1   10000 perm   2 sec   (5975 perm/sec)   p_kst 4.010000e-02   p_cons 4.500000e-01   p_joint 1.080000e-01

Joint ci ratio: 1.024545e-01	ci left: 6.469544e-02	ci right 7.173072e-02	k: 1363	n:20000
Cons ci ratio: 3.155518e-02	ci left: 4.286132e-01	ci right 4.424056e-01	k: 8710	n:20000
KS ci ratio: 1.364125e-01	ci left: 3.693936e-02	ci right 4.239551e-02	k: 792	n:20000
GOT1L1   20000 perm   8 sec   (2602 perm/sec)   p_kst 3.960000e-02   p_cons 4.355000e-01   p_joint 6.815000e-02

Joint ci ratio: 7.261671e-02	ci left: 8.530935e-02	ci right 9.177059e-02	k: 2655	n:30000
Cons ci ratio: 2.520889e-02	ci left: 4.406303e-01	ci right 4.519135e-01	k: 13388	n:30000
KS ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
GOT1L1   30000 perm   13 sec   (2275 perm/sec)   p_kst 3.980000e-02   p_cons 4.462667e-01   p_joint 8.850000e-02

Joint ci ratio: 6.477579e-02	ci left: 8.115163e-02	ci right 8.660896e-02	k: 3354	n:40000
Cons ci ratio: 2.183700e-02	ci left: 4.412701e-01	ci right 4.510377e-01	k: 17846	n:40000
KS ci ratio: 9.858217e-02	ci left: 3.614741e-02	ci right 3.992003e-02	k: 1520	n:40000
GOT1L1   40000 perm   17 sec   (2402 perm/sec)   p_kst 3.800000e-02   p_cons 4.461500e-01   p_joint 8.385000e-02

Outputting figure to mutsig2_images.part000000000072/GOT1L1.5_1147_40000_0.038_0.44615_0.08385.png
                gene_name: GOT1L1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 24 percent done.
GPA33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
Cons ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
KS ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
GPA33   10000 perm   5 sec   (2000 perm/sec)   p_kst 4.504000e-01   p_cons 1.408000e-01   p_joint 4.152000e-01

Outputting figure to mutsig2_images.part000000000072/GPA33.5_988_10000_0.4504_0.1408_0.4152.png
                gene_name: GPA33
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 25 percent done.
GPATCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
GPATCH1   10000 perm   8 sec   (1296 perm/sec)   p_kst 1.425000e-01   p_cons 2.939000e-01   p_joint 2.679000e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH1.5_2876_10000_0.1425_0.2939_0.2679.png
                gene_name: GPATCH1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 27 percent done.
GNAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
GNAZ   10000 perm   2 sec   (5743 perm/sec)   p_kst 2.320000e-02   p_cons 5.420000e-02   p_joint 4.920000e-02

Joint ci ratio: 2.061923e-01	ci left: 1.591794e-02	ci right 1.962416e-02	k: 354	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
GNAZ   20000 perm   9 sec   (2307 perm/sec)   p_kst 2.255000e-02   p_cons 5.425000e-02   p_joint 1.770000e-02

Joint ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
Cons ci ratio: 9.460228e-02	ci left: 5.156679e-02	ci right 5.671998e-02	k: 1623	n:30000
KS ci ratio: 1.489458e-01	ci left: 2.088364e-02	ci right 2.427636e-02	k: 676	n:30000
GNAZ   30000 perm   13 sec   (2298 perm/sec)   p_kst 2.253333e-02   p_cons 5.410000e-02   p_joint 1.866667e-02

Joint ci ratio: 1.113534e-01	ci left: 2.837429e-02	ci right 3.174439e-02	k: 1201	n:40000
Cons ci ratio: 8.203515e-02	ci left: 5.178049e-02	ci right 5.623453e-02	k: 2159	n:40000
KS ci ratio: 1.297037e-01	ci left: 2.087524e-02	ci right 2.379468e-02	k: 892	n:40000
GNAZ   40000 perm   17 sec   (2287 perm/sec)   p_kst 2.230000e-02   p_cons 5.397500e-02   p_joint 3.002500e-02

Joint ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
Cons ci ratio: 6.952389e-02	ci left: 5.769788e-02	ci right 6.187341e-02	k: 2988	n:50000
KS ci ratio: 1.172113e-01	ci left: 2.059611e-02	ci right 2.317982e-02	k: 1093	n:50000
GNAZ   50000 perm   22 sec   (2253 perm/sec)   p_kst 2.186000e-02   p_cons 5.976000e-02   p_joint 2.148000e-02

Joint ci ratio: 1.192182e-01	ci left: 1.664380e-02	ci right 1.876989e-02	k: 1061	n:60000
Cons ci ratio: 6.344574e-02	ci left: 5.791570e-02	ci right 6.172701e-02	k: 3588	n:60000
KS ci ratio: 1.072414e-01	ci left: 2.061392e-02	ci right 2.296599e-02	k: 1306	n:60000
GNAZ   60000 perm   27 sec   (2218 perm/sec)   p_kst 2.176667e-02   p_cons 5.980000e-02   p_joint 1.768333e-02

Joint ci ratio: 1.407644e-01	ci left: 1.018536e-02	ci right 1.174129e-02	k: 766	n:70000
Cons ci ratio: 6.191786e-02	ci left: 5.247780e-02	ci right 5.584499e-02	k: 3790	n:70000
KS ci ratio: 9.924752e-02	ci left: 2.071699e-02	ci right 2.289433e-02	k: 1525	n:70000
GNAZ   70000 perm   32 sec   (2181 perm/sec)   p_kst 2.178571e-02   p_cons 5.414286e-02   p_joint 1.094286e-02

Joint ci ratio: 1.430435e-01	ci left: 8.634392e-03	ci right 9.976555e-03	k: 743	n:80000
Cons ci ratio: 5.815036e-02	ci left: 5.218486e-02	ci right 5.532261e-02	k: 4299	n:80000
KS ci ratio: 9.300131e-02	ci left: 2.071369e-02	ci right 2.274620e-02	k: 1737	n:80000
GNAZ   80000 perm   37 sec   (2152 perm/sec)   p_kst 2.171250e-02   p_cons 5.373750e-02   p_joint 9.287500e-03

Joint ci ratio: 1.384119e-01	ci left: 8.221608e-03	ci right 9.454806e-03	k: 794	n:90000
Cons ci ratio: 5.469043e-02	ci left: 5.252125e-02	ci right 5.548536e-02	k: 4859	n:90000
KS ci ratio: 8.707559e-02	ci left: 2.106243e-02	ci right 2.299077e-02	k: 1981	n:90000
GNAZ   90000 perm   43 sec   (2116 perm/sec)   p_kst 2.201111e-02   p_cons 5.398889e-02   p_joint 8.822222e-03

Joint ci ratio: 1.297136e-01	ci left: 8.462650e-03	ci right 9.646090e-03	k: 904	n:100000
Cons ci ratio: 5.198577e-02	ci left: 5.239968e-02	ci right 5.520627e-02	k: 5379	n:100000
KS ci ratio: 8.350774e-02	ci left: 2.065890e-02	ci right 2.246900e-02	k: 2155	n:100000
GNAZ   100000 perm   48 sec   (2077 perm/sec)   p_kst 2.155000e-02   p_cons 5.379000e-02   p_joint 9.040000e-03

Joint ci ratio: 1.409555e-01	ci left: 6.489478e-03	ci right 7.482238e-03	k: 767	n:110000
Cons ci ratio: 4.953555e-02	ci left: 5.252782e-02	ci right 5.520486e-02	k: 5924	n:110000
KS ci ratio: 7.956327e-02	ci left: 2.073117e-02	ci right 2.245782e-02	k: 2374	n:110000
GNAZ   110000 perm   54 sec   (2044 perm/sec)   p_kst 2.158182e-02   p_cons 5.385455e-02   p_joint 6.972727e-03

Joint ci ratio: 1.442461e-01	ci left: 5.675289e-03	ci right 6.565499e-03	k: 733	n:120000
Cons ci ratio: 4.742529e-02	ci left: 5.258775e-02	ci right 5.515053e-02	k: 6463	n:120000
KS ci ratio: 7.612966e-02	ci left: 2.079307e-02	ci right 2.244682e-02	k: 2593	n:120000
GNAZ   120000 perm   59 sec   (2021 perm/sec)   p_kst 2.160833e-02   p_cons 5.385833e-02   p_joint 6.108333e-03

Joint ci ratio: 1.419646e-01	ci left: 5.416681e-03	ci right 6.251747e-03	k: 757	n:130000
Cons ci ratio: 4.563597e-02	ci left: 5.248072e-02	ci right 5.493924e-02	k: 6981	n:130000
KS ci ratio: 7.302581e-02	ci left: 2.089214e-02	ci right 2.248314e-02	k: 2818	n:130000
GNAZ   130000 perm   65 sec   (1992 perm/sec)   p_kst 2.167692e-02   p_cons 5.370000e-02   p_joint 5.823077e-03

Joint ci ratio: 1.301001e-01	ci left: 6.023520e-03	ci right 6.868546e-03	k: 901	n:140000
Cons ci ratio: 4.399473e-02	ci left: 5.248244e-02	ci right 5.485037e-02	k: 7512	n:140000
KS ci ratio: 7.010842e-02	ci left: 2.107651e-02	ci right 2.261481e-02	k: 3057	n:140000
GNAZ   140000 perm   71 sec   (1959 perm/sec)   p_kst 2.183571e-02   p_cons 5.365714e-02   p_joint 6.435714e-03

Joint ci ratio: 1.012532e-01	ci left: 9.392133e-03	ci right 1.040028e-02	k: 1483	n:150000
Cons ci ratio: 4.253547e-02	ci left: 5.244572e-02	ci right 5.473157e-02	k: 8037	n:150000
KS ci ratio: 6.763026e-02	ci left: 2.116526e-02	ci right 2.265330e-02	k: 3285	n:150000
GNAZ   150000 perm   79 sec   (1894 perm/sec)   p_kst 2.190000e-02   p_cons 5.358000e-02   p_joint 9.886667e-03

Joint ci ratio: 1.017705e-01	ci left: 8.719692e-03	ci right 9.660722e-03	k: 1469	n:160000
Cons ci ratio: 4.108078e-02	ci left: 5.273657e-02	ci right 5.495463e-02	k: 8614	n:160000
KS ci ratio: 6.551204e-02	ci left: 2.116996e-02	ci right 2.260994e-02	k: 3501	n:160000
GNAZ   160000 perm   90 sec   (1785 perm/sec)   p_kst 2.188125e-02   p_cons 5.383750e-02   p_joint 9.181250e-03

Joint ci ratio: 1.038858e-01	ci left: 7.874187e-03	ci right 8.742707e-03	k: 1411	n:170000
Cons ci ratio: 3.977491e-02	ci left: 5.297106e-02	ci right 5.512653e-02	k: 9187	n:170000
KS ci ratio: 6.341568e-02	ci left: 2.128478e-02	ci right 2.268453e-02	k: 3736	n:170000
GNAZ   170000 perm   100 sec   (1707 perm/sec)   p_kst 2.197647e-02   p_cons 5.404118e-02   p_joint 8.300000e-03

Joint ci ratio: 9.482096e-02	ci left: 8.959353e-03	ci right 9.856554e-03	k: 1692	n:180000
Cons ci ratio: 3.872896e-02	ci left: 5.280615e-02	ci right 5.489714e-02	k: 9692	n:180000
KS ci ratio: 6.168338e-02	ci left: 2.126711e-02	ci right 2.262613e-02	k: 3949	n:180000
GNAZ   180000 perm   110 sec   (1634 perm/sec)   p_kst 2.193889e-02   p_cons 5.384444e-02   p_joint 9.400000e-03

Outputting figure to mutsig2_images.part000000000072/GNAZ.4_1076_180000_0.021939_0.053844_0.0094.png
                gene_name: GNAZ
               theta_stop: 0.095 
                    nperm: 180000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.0094 
     ci_joint_bounds_left: 0.0090 
    ci_joint_bounds_right: 0.0099 

Current progress: 29 percent done.
GNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
Cons ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
KS ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
GNG2   10000 perm   2 sec   (4111 perm/sec)   p_kst 4.351000e-01   p_cons 3.281000e-01   p_joint 5.061000e-01

Outputting figure to mutsig2_images.part000000000072/GNG2.4_224_10000_0.4351_0.3281_0.5061.png
                gene_name: GNG2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 31 percent done.
GOLGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.936930e-03	ci left: 9.567051e-01	ci right 9.644236e-01	k: 9607	n:10000
Cons ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
GOLGA1   10000 perm   3 sec   (3292 perm/sec)   p_kst 9.109000e-01   p_cons 7.538000e-01   p_joint 9.607000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA1.4_2388_10000_0.9109_0.7538_0.9607.png
                gene_name: GOLGA1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 33 percent done.
GOLGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
GOLGA2   10000 perm   2 sec   (5324 perm/sec)   p_kst 9.471000e-01   p_cons 5.380000e-02   p_joint 1.469000e-01

Joint ci ratio: 4.610918e-02	ci left: 2.592900e-01	ci right 2.715782e-01	k: 5308	n:20000
Cons ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
KS ci ratio: 6.484436e-03	ci left: 9.449864e-01	ci right 9.511826e-01	k: 18963	n:20000
GOLGA2   20000 perm   7 sec   (2708 perm/sec)   p_kst 9.481500e-01   p_cons 5.680000e-02   p_joint 2.654000e-01

Joint ci ratio: 4.077329e-02	ci left: 2.307077e-01	ci right 2.403436e-01	k: 7065	n:30000
Cons ci ratio: 9.265777e-02	ci left: 5.368549e-02	ci right 5.893419e-02	k: 1688	n:30000
KS ci ratio: 5.255174e-03	ci left: 9.463137e-01	ci right 9.513323e-01	k: 28466	n:30000
GOLGA2   30000 perm   12 sec   (2515 perm/sec)   p_kst 9.488667e-01   p_cons 5.626667e-02   p_joint 2.355000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA2.4_3113_30000_0.94887_0.056267_0.2355.png
                gene_name: GOLGA2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 35 percent done.
GORAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
KS ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
GORAB   10000 perm   4 sec   (2773 perm/sec)   p_kst 5.194000e-01   p_cons 4.043000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000072/GORAB.4_1209_10000_0.5194_0.4043_0.6035.png
                gene_name: GORAB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 37 percent done.
GOT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
Cons ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
KS ci ratio: 1.879503e-02	ci left: 8.053187e-01	ci right 8.206985e-01	k: 8131	n:10000
GOT2   10000 perm   2 sec   (4049 perm/sec)   p_kst 8.131000e-01   p_cons 9.488000e-01   p_joint 9.804000e-01

Outputting figure to mutsig2_images.part000000000072/GOT2.4_1333_10000_0.8131_0.9488_0.9804.png
                gene_name: GOT2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 39 percent done.
GPBP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
GPBP1L1   10000 perm   4 sec   (2379 perm/sec)   p_kst 2.070000e-02   p_cons 8.331000e-01   p_joint 1.097000e-01

Joint ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
Cons ci ratio: 1.258731e-02	ci left: 8.237598e-01	ci right 8.342443e-01	k: 16581	n:20000
KS ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
GPBP1L1   20000 perm   6 sec   (3209 perm/sec)   p_kst 2.055000e-02   p_cons 8.290500e-01   p_joint 1.088500e-01

Joint ci ratio: 1.010111e-01	ci left: 4.538053e-02	ci right 5.024085e-02	k: 1433	n:30000
Cons ci ratio: 1.026709e-02	ci left: 8.250276e-01	ci right 8.335752e-01	k: 24880	n:30000
KS ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
GPBP1L1   30000 perm   8 sec   (3610 perm/sec)   p_kst 2.056667e-02   p_cons 8.293333e-01   p_joint 4.776667e-02

Joint ci ratio: 7.937034e-02	ci left: 5.518927e-02	ci right 5.977524e-02	k: 2298	n:40000
Cons ci ratio: 8.916087e-03	ci left: 8.248201e-01	ci right 8.322321e-01	k: 33142	n:40000
KS ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
GPBP1L1   40000 perm   10 sec   (3844 perm/sec)   p_kst 2.092500e-02   p_cons 8.285500e-01   p_joint 5.745000e-02

Joint ci ratio: 7.283440e-02	ci left: 5.276205e-02	ci right 5.676984e-02	k: 2737	n:50000
Cons ci ratio: 7.975600e-03	ci left: 8.251871e-01	ci right 8.318147e-01	k: 41426	n:50000
KS ci ratio: 1.208170e-01	ci left: 1.937287e-02	ci right 2.188322e-02	k: 1030	n:50000
GPBP1L1   50000 perm   13 sec   (3979 perm/sec)   p_kst 2.060000e-02   p_cons 8.285200e-01   p_joint 5.474000e-02

Joint ci ratio: 5.969489e-02	ci left: 6.504496e-02	ci right 6.906371e-02	k: 4022	n:60000
Cons ci ratio: 7.306792e-03	ci left: 8.244528e-01	ci right 8.305155e-01	k: 49650	n:60000
KS ci ratio: 1.109424e-01	ci left: 1.925135e-02	ci right 2.152870e-02	k: 1222	n:60000
GPBP1L1   60000 perm   15 sec   (4044 perm/sec)   p_kst 2.036667e-02   p_cons 8.275000e-01   p_joint 6.703333e-02

Joint ci ratio: 6.112077e-02	ci left: 5.380115e-02	ci right 5.720724e-02	k: 3884	n:70000
Cons ci ratio: 6.737666e-03	ci left: 8.258306e-01	ci right 8.314278e-01	k: 58005	n:70000
KS ci ratio: 1.030018e-01	ci left: 1.922630e-02	ci right 2.132802e-02	k: 1418	n:70000
GPBP1L1   70000 perm   17 sec   (4080 perm/sec)   p_kst 2.025714e-02   p_cons 8.286429e-01   p_joint 5.548571e-02

Joint ci ratio: 6.113018e-02	ci left: 4.739108e-02	ci right 5.039174e-02	k: 3910	n:80000
Cons ci ratio: 6.312049e-03	ci left: 8.255806e-01	ci right 8.308206e-01	k: 66257	n:80000
KS ci ratio: 9.628021e-02	ci left: 1.932174e-02	ci right 2.128827e-02	k: 1623	n:80000
GPBP1L1   80000 perm   20 sec   (4091 perm/sec)   p_kst 2.028750e-02   p_cons 8.282125e-01   p_joint 4.887500e-02

Outputting figure to mutsig2_images.part000000000072/GPBP1L1.4_1465_80000_0.020287_0.82821_0.048875.png
                gene_name: GPBP1L1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 41 percent done.
GNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
Cons ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
KS ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
GNAI1   10000 perm   1 sec   (6842 perm/sec)   p_kst 4.309000e-01   p_cons 3.796000e-01   p_joint 4.309000e-01

Outputting figure to mutsig2_images.part000000000072/GNAI1.3_1097_10000_0.4309_0.3796_0.4309.png
                gene_name: GNAI1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 43 percent done.
GNG11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
Cons ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
KS ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
GNG11   10000 perm   3 sec   (2917 perm/sec)   p_kst 2.618000e-01   p_cons 1.777000e-01   p_joint 4.022000e-01

Outputting figure to mutsig2_images.part000000000072/GNG11.3_230_10000_0.2618_0.1777_0.4022.png
                gene_name: GNG11
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 45 percent done.
GNPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
Cons ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
KS ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
GNPAT   10000 perm   2 sec   (5609 perm/sec)   p_kst 4.500000e-01   p_cons 9.503000e-01   p_joint 6.676000e-01

Outputting figure to mutsig2_images.part000000000072/GNPAT.3_2107_10000_0.45_0.9503_0.6676.png
                gene_name: GNPAT
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 47 percent done.
GNPTAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
GNPTAB   10000 perm   3 sec   (3971 perm/sec)   p_kst 9.280000e-01   p_cons 7.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNPTAB.3_3855_10000_0.928_0.7579_1.png
                gene_name: GNPTAB
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
GOLGA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
KS ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
GOLGA2B   10000 perm   1 sec   (6765 perm/sec)   p_kst 7.609000e-01   p_cons 6.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA2B.3_451_10000_0.7609_0.662_1.png
                gene_name: GOLGA2B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
GOLGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
GOLGA5   10000 perm   2 sec   (6384 perm/sec)   p_kst 7.344000e-01   p_cons 6.341000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA5.3_2244_10000_0.7344_0.6341_1.png
                gene_name: GOLGA5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
GOLGA6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
Cons ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
KS ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
GOLGA6C   10000 perm   2 sec   (5900 perm/sec)   p_kst 4.447000e-01   p_cons 8.349000e-01   p_joint 6.545000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA6C.3_2154_10000_0.4447_0.8349_0.6545.png
                gene_name: GOLGA6C
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 55 percent done.
GP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187538e-02	ci left: 9.103913e-01	ci right 9.213650e-01	k: 9160	n:10000
Cons ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
KS ci ratio: 2.521587e-02	ci left: 6.982727e-01	ci right 7.162065e-01	k: 7073	n:10000
GP5   10000 perm   2 sec   (6082 perm/sec)   p_kst 7.073000e-01   p_cons 7.136000e-01   p_joint 9.160000e-01

Outputting figure to mutsig2_images.part000000000072/GP5.3_1687_10000_0.7073_0.7136_0.916.png
                gene_name: GP5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 57 percent done.
GP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
GP6   10000 perm   1 sec   (6668 perm/sec)   p_kst 2.394000e-01   p_cons 2.490000e-02   p_joint 6.290000e-02

Joint ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 4.963812e-02	ci left: 2.317645e-01	ci right 2.436119e-01	k: 4753	n:20000
GP6   20000 perm   3 sec   (6021 perm/sec)   p_kst 2.376500e-01   p_cons 2.775000e-02   p_joint 5.025000e-02

Joint ci ratio: 1.044213e-01	ci left: 4.251916e-02	ci right 4.723615e-02	k: 1345	n:30000
Cons ci ratio: 1.315030e-01	ci left: 2.687203e-02	ci right 3.068662e-02	k: 862	n:30000
KS ci ratio: 4.081107e-02	ci left: 2.303767e-01	ci right 2.400079e-01	k: 7055	n:30000
GP6   30000 perm   5 sec   (5771 perm/sec)   p_kst 2.351667e-01   p_cons 2.873333e-02   p_joint 4.483333e-02

Joint ci ratio: 1.256607e-01	ci left: 2.225571e-02	ci right 2.526398e-02	k: 949	n:40000
Cons ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
KS ci ratio: 3.563076e-02	ci left: 2.281437e-01	ci right 2.364452e-01	k: 9291	n:40000
GP6   40000 perm   7 sec   (5589 perm/sec)   p_kst 2.322750e-01   p_cons 2.530000e-02   p_joint 2.372500e-02

Joint ci ratio: 1.158120e-01	ci left: 2.110127e-02	ci right 2.371459e-02	k: 1119	n:50000
Cons ci ratio: 1.076808e-01	ci left: 2.442796e-02	ci right 2.722746e-02	k: 1290	n:50000
KS ci ratio: 3.174102e-02	ci left: 2.300161e-01	ci right 2.374548e-01	k: 11686	n:50000
GP6   50000 perm   9 sec   (5451 perm/sec)   p_kst 2.337200e-01   p_cons 2.580000e-02   p_joint 2.238000e-02

Joint ci ratio: 1.078332e-01	ci left: 2.038673e-02	ci right 2.272653e-02	k: 1292	n:60000
Cons ci ratio: 9.827282e-02	ci left: 2.456236e-02	ci right 2.711711e-02	k: 1549	n:60000
KS ci ratio: 2.914147e-02	ci left: 2.283121e-01	ci right 2.350805e-01	k: 13901	n:60000
GP6   60000 perm   11 sec   (5326 perm/sec)   p_kst 2.316833e-01   p_cons 2.581667e-02   p_joint 2.153333e-02

Joint ci ratio: 9.148632e-02	ci left: 2.438668e-02	ci right 2.673859e-02	k: 1788	n:70000
Cons ci ratio: 9.025139e-02	ci left: 2.505720e-02	ci right 2.743943e-02	k: 1836	n:70000
KS ci ratio: 2.702640e-02	ci left: 2.279529e-01	ci right 2.342123e-01	k: 16175	n:70000
GP6   70000 perm   13 sec   (5220 perm/sec)   p_kst 2.310714e-01   p_cons 2.622857e-02   p_joint 2.554286e-02

Outputting figure to mutsig2_images.part000000000072/GP6.3_1895_70000_0.23107_0.026229_0.025543.png
                gene_name: GP6
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 59 percent done.
GPAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
GPAM   10000 perm   2 sec   (5661 perm/sec)   p_kst 4.741000e-01   p_cons 7.454000e-01   p_joint 5.492000e-01

Outputting figure to mutsig2_images.part000000000072/GPAM.3_2567_10000_0.4741_0.7454_0.5492.png
                gene_name: GPAM
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 61 percent done.
GPAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
KS ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
GPAT2   10000 perm   2 sec   (6013 perm/sec)   p_kst 5.753000e-01   p_cons 7.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GPAT2.3_2472_10000_0.5753_0.7333_1.png
                gene_name: GPAT2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
GNAO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
Cons ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
GNAO1   10000 perm   1 sec   (7177 perm/sec)   p_kst 2.111000e-01   p_cons 1.789000e-01   p_joint 3.911000e-01

Outputting figure to mutsig2_images.part000000000072/GNAO1.2_1447_10000_0.2111_0.1789_0.3911.png
                gene_name: GNAO1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 65 percent done.
GNAQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
KS ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
GNAQ   10000 perm   1 sec   (7552 perm/sec)   p_kst 4.013000e-01   p_cons 2.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNAQ.2_1108_10000_0.4013_0.2474_1.png
                gene_name: GNAQ
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
GNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 1.767934e-02	ci left: 8.235089e-01	ci right 8.382978e-01	k: 8310	n:10000
GNB1   10000 perm   1 sec   (7526 perm/sec)   p_kst 8.310000e-01   p_cons 3.184000e-01   p_joint 9.729000e-01

Outputting figure to mutsig2_images.part000000000072/GNB1.2_1059_10000_0.831_0.3184_0.9729.png
                gene_name: GNB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 69 percent done.
GNB2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
GNB2L1   10000 perm   2 sec   (6559 perm/sec)   p_kst 1.529000e-01   p_cons 3.140000e-02   p_joint 3.740000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 1.538196e-01	ci left: 2.902635e-02	ci right 3.391111e-02	k: 628	n:20000
KS ci ratio: 6.641265e-02	ci left: 1.434009e-01	ci right 1.533016e-01	k: 2966	n:20000
GNB2L1   20000 perm   3 sec   (5848 perm/sec)   p_kst 1.483000e-01   p_cons 3.140000e-02   p_joint 3.680000e-02

Joint ci ratio: 7.240754e-02	ci left: 8.576834e-02	ci right 9.224485e-02	k: 2669	n:30000
Cons ci ratio: 4.636788e-02	ci left: 1.879197e-01	ci right 1.968733e-01	k: 5771	n:30000
KS ci ratio: 5.399471e-02	ci left: 1.453835e-01	ci right 1.534845e-01	k: 4482	n:30000
GNB2L1   30000 perm   5 sec   (5748 perm/sec)   p_kst 1.494000e-01   p_cons 1.923667e-01   p_joint 8.896667e-02

Outputting figure to mutsig2_images.part000000000072/GNB2L1.2_986_30000_0.1494_0.19237_0.088967.png
                gene_name: GNB2L1
               theta_stop: 0.072 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 71 percent done.
GNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
GNB3   10000 perm   1 sec   (6786 perm/sec)   p_kst 1.921000e-01   p_cons 2.163000e-01   p_joint 2.380000e-01

Outputting figure to mutsig2_images.part000000000072/GNB3.2_1059_10000_0.1921_0.2163_0.238.png
                gene_name: GNB3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 73 percent done.
GNG12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
GNG12   10000 perm   1 sec   (7359 perm/sec)   p_kst 2.970000e-02   p_cons 2.539000e-01   p_joint 3.817000e-01

Joint ci ratio: 6.074107e-02	ci left: 1.670892e-01	ci right 1.776063e-01	k: 3446	n:20000
Cons ci ratio: 4.799680e-02	ci left: 2.440601e-01	ci right 2.561126e-01	k: 5001	n:20000
KS ci ratio: 1.637627e-01	ci left: 2.556543e-02	ci right 3.017320e-02	k: 556	n:20000
GNG12   20000 perm   3 sec   (6478 perm/sec)   p_kst 2.780000e-02   p_cons 2.500500e-01   p_joint 1.723000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 3.905398e-02	ci left: 2.464655e-01	ci right 2.563161e-01	k: 7541	n:30000
KS ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
GNG12   30000 perm   5 sec   (6385 perm/sec)   p_kst 2.760000e-02   p_cons 2.513667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 3.382853e-02	ci left: 2.470549e-01	ci right 2.555812e-01	k: 10052	n:40000
KS ci ratio: 1.161750e-01	ci left: 2.606501e-02	ci right 2.930405e-02	k: 1106	n:40000
GNG12   40000 perm   6 sec   (6274 perm/sec)   p_kst 2.765000e-02   p_cons 2.513000e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 3.015981e-02	ci left: 2.487163e-01	ci right 2.563524e-01	k: 12626	n:50000
KS ci ratio: 1.047602e-01	ci left: 2.581119e-02	ci right 2.868405e-02	k: 1361	n:50000
GNG12   50000 perm   8 sec   (6154 perm/sec)   p_kst 2.722000e-02   p_cons 2.525200e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 2.753251e-02	ci left: 2.490441e-01	ci right 2.560132e-01	k: 15151	n:60000
KS ci ratio: 9.631331e-02	ci left: 2.557119e-02	ci right 2.817485e-02	k: 1611	n:60000
GNG12   60000 perm   10 sec   (6049 perm/sec)   p_kst 2.685000e-02   p_cons 2.525167e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNG12.2_227_60000_0.02685_0.25252_1.png
                gene_name: GNG12
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
GNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
GNG3   10000 perm   1 sec   (7068 perm/sec)   p_kst 9.614000e-01   p_cons 3.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNG3.2_236_10000_0.9614_0.372_1.png
                gene_name: GNG3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
GNGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
KS ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
GNGT1   10000 perm   1 sec   (7286 perm/sec)   p_kst 1.458000e-01   p_cons 7.891000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNGT1.2_233_10000_0.1458_0.7891_1.png
                gene_name: GNGT1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
GNGT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
KS ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
GNGT2   10000 perm   1 sec   (8096 perm/sec)   p_kst 6.559000e-01   p_cons 2.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNGT2.2_218_10000_0.6559_0.2623_1.png
                gene_name: GNGT2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
GNPDA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
Cons ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
KS ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
GNPDA2   10000 perm   1 sec   (6983 perm/sec)   p_kst 8.388000e-01   p_cons 6.931000e-01   p_joint 9.613000e-01

Outputting figure to mutsig2_images.part000000000072/GNPDA2.2_855_10000_0.8388_0.6931_0.9613.png
                gene_name: GNPDA2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 82 percent done.
GNRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
GNRHR   10000 perm   2 sec   (6578 perm/sec)   p_kst 3.900000e-03   p_cons 2.915000e-01   p_joint 8.700000e-03

Joint ci ratio: 3.096304e-01	ci left: 6.720018e-03	ci right 9.226206e-03	k: 158	n:20000
Cons ci ratio: 4.311436e-02	ci left: 2.861015e-01	ci right 2.987588e-01	k: 5848	n:20000
KS ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
GNRHR   20000 perm   3 sec   (6002 perm/sec)   p_kst 3.700000e-03   p_cons 2.924000e-01   p_joint 7.900000e-03

Joint ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
Cons ci ratio: 3.514191e-02	ci left: 2.879859e-01	ci right 2.983208e-01	k: 8794	n:30000
KS ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
GNRHR   30000 perm   5 sec   (5900 perm/sec)   p_kst 3.833333e-03   p_cons 2.931333e-01   p_joint 8.366667e-03

Joint ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
Cons ci ratio: 3.039469e-02	ci left: 2.892143e-01	ci right 2.981656e-01	k: 11747	n:40000
KS ci ratio: 3.295371e-01	ci left: 2.945046e-03	ci right 4.128835e-03	k: 140	n:40000
GNRHR   40000 perm   7 sec   (5784 perm/sec)   p_kst 3.500000e-03   p_cons 2.936750e-01   p_joint 8.025000e-03

Joint ci ratio: 1.925611e-01	ci left: 7.428193e-03	ci right 9.029691e-03	k: 410	n:50000
Cons ci ratio: 2.717406e-02	ci left: 2.898692e-01	ci right 2.978747e-01	k: 14693	n:50000
KS ci ratio: 2.949577e-01	ci left: 3.001357e-03	ci right 4.057579e-03	k: 175	n:50000
GNRHR   50000 perm   9 sec   (5678 perm/sec)   p_kst 3.500000e-03   p_cons 2.938600e-01   p_joint 8.200000e-03

Joint ci ratio: 1.801051e-01	ci left: 7.127562e-03	ci right 8.553994e-03	k: 469	n:60000
Cons ci ratio: 2.472280e-02	ci left: 2.916183e-01	ci right 2.989348e-01	k: 17716	n:60000
KS ci ratio: 2.788273e-01	ci left: 2.825927e-03	ci right 3.756477e-03	k: 196	n:60000
GNRHR   60000 perm   11 sec   (5574 perm/sec)   p_kst 3.266667e-03   p_cons 2.952667e-01   p_joint 7.816667e-03

Joint ci ratio: 2.228692e-01	ci left: 3.909697e-03	ci right 4.903503e-03	k: 307	n:70000
Cons ci ratio: 2.288167e-02	ci left: 2.920217e-01	ci right 2.987953e-01	k: 20678	n:70000
KS ci ratio: 2.536617e-01	ci left: 2.968953e-03	ci right 3.844438e-03	k: 237	n:70000
GNRHR   70000 perm   13 sec   (5468 perm/sec)   p_kst 3.385714e-03   p_cons 2.954000e-01   p_joint 4.385714e-03

Joint ci ratio: 2.102830e-01	ci left: 3.870228e-03	ci right 4.791288e-03	k: 345	n:80000
Cons ci ratio: 2.140265e-02	ci left: 2.922647e-01	ci right 2.986001e-01	k: 23634	n:80000
KS ci ratio: 2.386030e-01	ci left: 2.961451e-03	ci right 3.775223e-03	k: 268	n:80000
GNRHR   80000 perm   15 sec   (5373 perm/sec)   p_kst 3.350000e-03   p_cons 2.954250e-01   p_joint 4.312500e-03

Joint ci ratio: 1.970529e-01	ci left: 3.946375e-03	ci right 4.819377e-03	k: 393	n:90000
Cons ci ratio: 2.019175e-02	ci left: 2.921768e-01	ci right 2.981476e-01	k: 26564	n:90000
KS ci ratio: 2.237090e-01	ci left: 3.019736e-03	ci right 3.790597e-03	k: 305	n:90000
GNRHR   90000 perm   17 sec   (5279 perm/sec)   p_kst 3.388889e-03   p_cons 2.951556e-01   p_joint 4.366667e-03

Joint ci ratio: 1.879740e-01	ci left: 3.922943e-03	ci right 4.746214e-03	k: 432	n:100000
Cons ci ratio: 1.918031e-02	ci left: 2.917955e-01	ci right 2.974564e-01	k: 29462	n:100000
KS ci ratio: 2.131748e-01	ci left: 3.010808e-03	ci right 3.738468e-03	k: 336	n:100000
GNRHR   100000 perm   19 sec   (5188 perm/sec)   p_kst 3.360000e-03   p_cons 2.946200e-01   p_joint 4.320000e-03

Joint ci ratio: 1.337753e-01	ci left: 7.227064e-03	ci right 8.271868e-03	k: 851	n:110000
Cons ci ratio: 1.828823e-02	ci left: 2.919160e-01	ci right 2.973130e-01	k: 32407	n:110000
KS ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
GNRHR   110000 perm   22 sec   (5099 perm/sec)   p_kst 3.318182e-03   p_cons 2.946091e-01   p_joint 7.736364e-03

Joint ci ratio: 1.277656e-01	ci left: 7.285807e-03	ci right 8.288199e-03	k: 933	n:120000
Cons ci ratio: 1.754066e-02	ci left: 2.912985e-01	ci right 2.964615e-01	k: 35265	n:120000
KS ci ratio: 1.964126e-01	ci left: 2.983401e-03	ci right 3.640964e-03	k: 396	n:120000
GNRHR   120000 perm   24 sec   (5011 perm/sec)   p_kst 3.300000e-03   p_cons 2.938750e-01   p_joint 7.775000e-03

Joint ci ratio: 1.652924e-01	ci left: 3.951556e-03	ci right 4.670831e-03	k: 559	n:130000
Cons ci ratio: 1.684810e-02	ci left: 2.915088e-01	ci right 2.964696e-01	k: 38218	n:130000
KS ci ratio: 1.876342e-01	ci left: 3.032177e-03	ci right 3.667219e-03	k: 434	n:130000
GNRHR   130000 perm   27 sec   (4899 perm/sec)   p_kst 3.338462e-03   p_cons 2.939846e-01   p_joint 4.300000e-03

Joint ci ratio: 1.592900e-01	ci left: 3.963975e-03	ci right 4.656802e-03	k: 602	n:140000
Cons ci ratio: 1.623605e-02	ci left: 2.915786e-01	ci right 2.963585e-01	k: 41155	n:140000
KS ci ratio: 1.816790e-01	ci left: 3.013159e-03	ci right 3.621985e-03	k: 463	n:140000
GNRHR   140000 perm   29 sec   (4819 perm/sec)   p_kst 3.307143e-03   p_cons 2.939643e-01   p_joint 4.300000e-03

Joint ci ratio: 1.534210e-01	ci left: 4.000792e-03	ci right 4.671923e-03	k: 649	n:150000
Cons ci ratio: 1.567361e-02	ci left: 2.919744e-01	ci right 2.965935e-01	k: 44142	n:150000
KS ci ratio: 1.751906e-01	ci left: 3.035199e-03	ci right 3.624258e-03	k: 498	n:150000
GNRHR   150000 perm   32 sec   (4742 perm/sec)   p_kst 3.320000e-03   p_cons 2.942800e-01   p_joint 4.326667e-03

Joint ci ratio: 1.496737e-01	ci left: 3.949164e-03	ci right 4.594003e-03	k: 682	n:160000
Cons ci ratio: 1.516037e-02	ci left: 2.924729e-01	ci right 2.969470e-01	k: 47153	n:160000
KS ci ratio: 1.711287e-01	ci left: 2.988992e-03	ci right 3.554245e-03	k: 522	n:160000
GNRHR   160000 perm   34 sec   (4666 perm/sec)   p_kst 3.262500e-03   p_cons 2.947063e-01   p_joint 4.262500e-03

Joint ci ratio: 1.443767e-01	ci left: 4.005835e-03	ci right 4.634784e-03	k: 733	n:170000
Cons ci ratio: 1.469963e-02	ci left: 2.927682e-01	ci right 2.971094e-01	k: 50139	n:170000
KS ci ratio: 1.650812e-01	ci left: 3.032936e-03	ci right 3.584217e-03	k: 561	n:170000
GNRHR   170000 perm   37 sec   (4600 perm/sec)   p_kst 3.300000e-03   p_cons 2.949353e-01   p_joint 4.311765e-03

Joint ci ratio: 1.410561e-01	ci left: 3.970785e-03	ci right 4.578685e-03	k: 768	n:180000
Cons ci ratio: 1.428383e-02	ci left: 2.928771e-01	ci right 2.970961e-01	k: 53097	n:180000
KS ci ratio: 1.607093e-01	ci left: 3.029641e-03	ci right 3.564331e-03	k: 592	n:180000
GNRHR   180000 perm   40 sec   (4532 perm/sec)   p_kst 3.288889e-03   p_cons 2.949833e-01   p_joint 4.266667e-03

Joint ci ratio: 1.389121e-01	ci left: 3.883675e-03	ci right 4.468454e-03	k: 792	n:190000
Cons ci ratio: 1.390513e-02	ci left: 2.928659e-01	ci right 2.969719e-01	k: 56034	n:190000
KS ci ratio: 1.582008e-01	ci left: 2.966188e-03	ci right 3.480732e-03	k: 611	n:190000
GNRHR   190000 perm   43 sec   (4465 perm/sec)   p_kst 3.215789e-03   p_cons 2.949158e-01   p_joint 4.168421e-03

Joint ci ratio: 1.359468e-01	ci left: 3.858471e-03	ci right 4.426049e-03	k: 827	n:200000
Cons ci ratio: 1.355781e-02	ci left: 2.927723e-01	ci right 2.967737e-01	k: 58954	n:200000
KS ci ratio: 1.545820e-01	ci left: 2.957204e-03	ci right 3.457367e-03	k: 640	n:200000
GNRHR   200000 perm   45 sec   (4397 perm/sec)   p_kst 3.200000e-03   p_cons 2.947700e-01   p_joint 4.135000e-03

Joint ci ratio: 1.330089e-01	ci left: 3.844996e-03	ci right 4.397402e-03	k: 864	n:210000
Cons ci ratio: 1.323315e-02	ci left: 2.927553e-01	ci right 2.966599e-01	k: 61888	n:210000
KS ci ratio: 1.508622e-01	ci left: 2.962943e-03	ci right 3.450929e-03	k: 672	n:210000
GNRHR   210000 perm   49 sec   (4330 perm/sec)   p_kst 3.200000e-03   p_cons 2.947048e-01   p_joint 4.114286e-03

Joint ci ratio: 1.296774e-01	ci left: 3.868051e-03	ci right 4.408779e-03	k: 909	n:220000
Cons ci ratio: 1.292396e-02	ci left: 2.929587e-01	ci right 2.967740e-01	k: 64870	n:220000
KS ci ratio: 1.475037e-01	ci left: 2.963913e-03	ci right 3.440234e-03	k: 703	n:220000
GNRHR   220000 perm   52 sec   (4264 perm/sec)   p_kst 3.195455e-03   p_cons 2.948636e-01   p_joint 4.131818e-03

Joint ci ratio: 1.265843e-01	ci left: 3.889259e-03	ci right 4.419009e-03	k: 954	n:230000
Cons ci ratio: 1.263945e-02	ci left: 2.930151e-01	ci right 2.967465e-01	k: 67822	n:230000
KS ci ratio: 1.442614e-01	ci left: 2.969100e-03	ci right 3.434863e-03	k: 735	n:230000
GNRHR   230000 perm   55 sec   (4201 perm/sec)   p_kst 3.195652e-03   p_cons 2.948783e-01   p_joint 4.147826e-03

Joint ci ratio: 1.249636e-01	ci left: 3.828088e-03	ci right 4.342336e-03	k: 979	n:240000
Cons ci ratio: 1.237839e-02	ci left: 2.928847e-01	ci right 2.965369e-01	k: 70730	n:240000
KS ci ratio: 1.421555e-01	ci left: 2.933766e-03	ci right 3.386698e-03	k: 757	n:240000
GNRHR   240000 perm   58 sec   (4139 perm/sec)   p_kst 3.154167e-03   p_cons 2.947083e-01   p_joint 4.079167e-03

Joint ci ratio: 1.223086e-01	ci left: 3.841646e-03	ci right 4.345957e-03	k: 1022	n:250000
Cons ci ratio: 1.213169e-02	ci left: 2.928055e-01	ci right 2.963833e-01	k: 73648	n:250000
KS ci ratio: 1.388066e-01	ci left: 2.959217e-03	ci right 3.404425e-03	k: 794	n:250000
GNRHR   250000 perm   61 sec   (4080 perm/sec)   p_kst 3.176000e-03   p_cons 2.945920e-01   p_joint 4.088000e-03

Joint ci ratio: 1.204415e-01	ci left: 3.813227e-03	ci right 4.305621e-03	k: 1054	n:260000
Cons ci ratio: 1.190359e-02	ci left: 2.925794e-01	ci right 2.960868e-01	k: 76526	n:260000
KS ci ratio: 1.365925e-01	ci left: 2.941954e-03	ci right 3.376930e-03	k: 820	n:260000
GNRHR   260000 perm   65 sec   (4023 perm/sec)   p_kst 3.153846e-03   p_cons 2.943308e-01   p_joint 4.053846e-03

Joint ci ratio: 1.180051e-01	ci left: 3.830102e-03	ci right 4.313972e-03	k: 1098	n:270000
Cons ci ratio: 1.167736e-02	ci left: 2.927441e-01	ci right 2.961863e-01	k: 79505	n:270000
KS ci ratio: 1.336135e-01	ci left: 2.965400e-03	ci right 3.393522e-03	k: 857	n:270000
GNRHR   270000 perm   68 sec   (3967 perm/sec)   p_kst 3.174074e-03   p_cons 2.944630e-01   p_joint 4.066667e-03

Joint ci ratio: 1.153567e-01	ci left: 3.870144e-03	ci right 4.347353e-03	k: 1149	n:280000
Cons ci ratio: 1.147401e-02	ci left: 2.925196e-01	ci right 2.958989e-01	k: 82378	n:280000
KS ci ratio: 1.306749e-01	ci left: 2.994177e-03	ci right 3.416209e-03	k: 896	n:280000
GNRHR   280000 perm   72 sec   (3914 perm/sec)   p_kst 3.200000e-03   p_cons 2.942071e-01   p_joint 4.103571e-03

Joint ci ratio: 1.134974e-01	ci left: 3.863974e-03	ci right 4.332228e-03	k: 1187	n:290000
Cons ci ratio: 1.127689e-02	ci left: 2.924592e-01	ci right 2.957794e-01	k: 85294	n:290000
KS ci ratio: 1.286829e-01	ci left: 2.984348e-03	ci right 3.398092e-03	k: 924	n:290000
GNRHR   290000 perm   75 sec   (3859 perm/sec)   p_kst 3.186207e-03   p_cons 2.941172e-01   p_joint 4.093103e-03

Joint ci ratio: 1.114062e-01	ci left: 3.880958e-03	ci right 4.342036e-03	k: 1232	n:300000
Cons ci ratio: 1.109628e-02	ci left: 2.921537e-01	ci right 2.954169e-01	k: 88135	n:300000
KS ci ratio: 1.261829e-01	ci left: 3.004274e-03	ci right 3.412083e-03	k: 961	n:300000
GNRHR   300000 perm   79 sec   (3810 perm/sec)   p_kst 3.203333e-03   p_cons 2.937833e-01   p_joint 4.106667e-03

Joint ci ratio: 1.099461e-01	ci left: 3.859268e-03	ci right 4.311371e-03	k: 1265	n:310000
Cons ci ratio: 1.091786e-02	ci left: 2.921035e-01	ci right 2.953133e-01	k: 91049	n:310000
KS ci ratio: 1.245127e-01	ci left: 2.988601e-03	ci right 3.388517e-03	k: 987	n:310000
GNRHR   310000 perm   82 sec   (3761 perm/sec)   p_kst 3.183871e-03   p_cons 2.937065e-01   p_joint 4.080645e-03

Joint ci ratio: 1.084163e-01	ci left: 3.848092e-03	ci right 4.292213e-03	k: 1301	n:320000
Cons ci ratio: 1.075175e-02	ci left: 2.919039e-01	ci right 2.950624e-01	k: 93914	n:320000
KS ci ratio: 1.232736e-01	ci left: 2.955767e-03	ci right 3.347066e-03	k: 1007	n:320000
GNRHR   320000 perm   86 sec   (3714 perm/sec)   p_kst 3.146875e-03   p_cons 2.934813e-01   p_joint 4.065625e-03

Joint ci ratio: 1.070692e-01	ci left: 3.828787e-03	ci right 4.264842e-03	k: 1334	n:330000
Cons ci ratio: 1.059502e-02	ci left: 2.916381e-01	ci right 2.947474e-01	k: 96753	n:330000
KS ci ratio: 1.217149e-01	ci left: 2.942571e-03	ci right 3.326842e-03	k: 1033	n:330000
GNRHR   330000 perm   90 sec   (3666 perm/sec)   p_kst 3.130303e-03   p_cons 2.931909e-01   p_joint 4.042424e-03

Joint ci ratio: 1.053850e-01	ci left: 3.839287e-03	ci right 4.269234e-03	k: 1377	n:340000
Cons ci ratio: 1.044352e-02	ci left: 2.914440e-01	ci right 2.945066e-01	k: 99611	n:340000
KS ci ratio: 1.200436e-01	ci left: 2.938740e-03	ci right 3.316866e-03	k: 1062	n:340000
GNRHR   340000 perm   94 sec   (3622 perm/sec)   p_kst 3.123529e-03   p_cons 2.929735e-01   p_joint 4.050000e-03

Joint ci ratio: 1.041465e-01	ci left: 3.821406e-03	ci right 4.244013e-03	k: 1410	n:350000
Cons ci ratio: 1.029600e-02	ci left: 2.913555e-01	ci right 2.943736e-01	k: 102502	n:350000
KS ci ratio: 1.185482e-01	ci left: 2.929616e-03	ci right 3.301544e-03	k: 1089	n:350000
GNRHR   350000 perm   98 sec   (3579 perm/sec)   p_kst 3.111429e-03   p_cons 2.928629e-01   p_joint 4.028571e-03

Joint ci ratio: 1.026655e-01	ci left: 3.826200e-03	ci right 4.242957e-03	k: 1451	n:360000
Cons ci ratio: 1.015177e-02	ci left: 2.913859e-01	ci right 2.943618e-01	k: 105434	n:360000
KS ci ratio: 1.168976e-01	ci left: 2.931813e-03	ci right 3.298480e-03	k: 1120	n:360000
GNRHR   360000 perm   102 sec   (3537 perm/sec)   p_kst 3.111111e-03   p_cons 2.928722e-01   p_joint 4.030556e-03

Joint ci ratio: 1.011779e-01	ci left: 3.836044e-03	ci right 4.247459e-03	k: 1494	n:370000
Cons ci ratio: 1.001513e-02	ci left: 2.913448e-01	ci right 2.942800e-01	k: 108340	n:370000
KS ci ratio: 1.152638e-01	ci left: 2.936550e-03	ci right 3.298328e-03	k: 1152	n:370000
GNRHR   370000 perm   106 sec   (3493 perm/sec)   p_kst 3.113514e-03   p_cons 2.928108e-01   p_joint 4.037838e-03

Joint ci ratio: 9.952601e-02	ci left: 3.863374e-03	ci right 4.270561e-03	k: 1544	n:380000
Cons ci ratio: 9.884427e-03	ci left: 2.912825e-01	ci right 2.941786e-01	k: 111237	n:380000
KS ci ratio: 1.136006e-01	ci left: 2.946186e-03	ci right 3.303562e-03	k: 1186	n:380000
GNRHR   380000 perm   114 sec   (3327 perm/sec)   p_kst 3.121053e-03   p_cons 2.927289e-01   p_joint 4.063158e-03

Joint ci ratio: 9.823111e-02	ci left: 3.866842e-03	ci right 4.268786e-03	k: 1585	n:390000
Cons ci ratio: 9.757202e-03	ci left: 2.912876e-01	ci right 2.941462e-01	k: 114159	n:390000
KS ci ratio: 1.121457e-01	ci left: 2.947886e-03	ci right 3.300586e-03	k: 1217	n:390000
GNRHR   390000 perm   123 sec   (3162 perm/sec)   p_kst 3.120513e-03   p_cons 2.927154e-01   p_joint 4.064103e-03

Joint ci ratio: 9.728613e-02	ci left: 3.845774e-03	ci right 4.241463e-03	k: 1616	n:400000
Cons ci ratio: 9.633487e-03	ci left: 2.913476e-01	ci right 2.941704e-01	k: 117103	n:400000
KS ci ratio: 1.112377e-01	ci left: 2.922790e-03	ci right 3.269470e-03	k: 1237	n:400000
GNRHR   400000 perm   133 sec   (3016 perm/sec)   p_kst 3.092500e-03   p_cons 2.927575e-01   p_joint 4.040000e-03

Joint ci ratio: 9.587266e-02	ci left: 3.866222e-03	ci right 4.257911e-03	k: 1664	n:410000
Cons ci ratio: 9.514081e-03	ci left: 2.914171e-01	ci right 2.942053e-01	k: 120052	n:410000
KS ci ratio: 1.095249e-01	ci left: 2.944000e-03	ci right 3.287472e-03	k: 1276	n:410000
GNRHR   410000 perm   142 sec   (2886 perm/sec)   p_kst 3.112195e-03   p_cons 2.928098e-01   p_joint 4.058537e-03

Joint ci ratio: 9.485324e-02	ci left: 3.857838e-03	ci right 4.244291e-03	k: 1700	n:420000
Cons ci ratio: 9.397495e-03	ci left: 2.915501e-01	ci right 2.943052e-01	k: 123029	n:420000
KS ci ratio: 1.084691e-01	ci left: 2.931805e-03	ci right 3.270346e-03	k: 1301	n:420000
GNRHR   420000 perm   152 sec   (2771 perm/sec)   p_kst 3.097619e-03   p_cons 2.929262e-01   p_joint 4.047619e-03

Joint ci ratio: 9.391996e-02	ci left: 3.845323e-03	ci right 4.226524e-03	k: 1734	n:430000
Cons ci ratio: 9.288220e-03	ci left: 2.915377e-01	ci right 2.942605e-01	k: 125946	n:430000
KS ci ratio: 1.075245e-01	ci left: 2.915666e-03	ci right 3.249226e-03	k: 1324	n:430000
GNRHR   430000 perm   157 sec   (2744 perm/sec)   p_kst 3.079070e-03   p_cons 2.928977e-01   p_joint 4.032558e-03

Joint ci ratio: 9.304010e-02	ci left: 3.831175e-03	ci right 4.207221e-03	k: 1767	n:440000
Cons ci ratio: 9.180504e-03	ci left: 2.916236e-01	ci right 2.943155e-01	k: 128906	n:440000
KS ci ratio: 1.063276e-01	ci left: 2.915759e-03	ci right 3.245384e-03	k: 1354	n:440000
GNRHR   440000 perm   162 sec   (2723 perm/sec)   p_kst 3.077273e-03   p_cons 2.929682e-01   p_joint 4.015909e-03

Joint ci ratio: 9.162432e-02	ci left: 3.865441e-03	ci right 4.238767e-03	k: 1822	n:450000
Cons ci ratio: 9.078154e-03	ci left: 2.916283e-01	ci right 2.942900e-01	k: 131831	n:450000
KS ci ratio: 1.047534e-01	ci left: 2.939672e-03	ci right 3.266778e-03	k: 1395	n:450000
GNRHR   450000 perm   167 sec   (2702 perm/sec)   p_kst 3.100000e-03   p_cons 2.929578e-01   p_joint 4.048889e-03

Joint ci ratio: 9.088064e-02	ci left: 3.845137e-03	ci right 4.213328e-03	k: 1852	n:460000
Cons ci ratio: 8.977881e-03	ci left: 2.916915e-01	ci right 2.943242e-01	k: 134783	n:460000
KS ci ratio: 1.038652e-01	ci left: 2.926578e-03	ci right 3.249297e-03	k: 1419	n:460000
GNRHR   460000 perm   172 sec   (2681 perm/sec)   p_kst 3.084783e-03   p_cons 2.930065e-01   p_joint 4.026087e-03

Joint ci ratio: 9.005878e-02	ci left: 3.834028e-03	ci right 4.197660e-03	k: 1886	n:470000
Cons ci ratio: 8.884554e-03	ci left: 2.915800e-01	ci right 2.941842e-01	k: 137654	n:470000
KS ci ratio: 1.029277e-01	ci left: 2.918198e-03	ci right 3.236913e-03	k: 1445	n:470000
GNRHR   470000 perm   177 sec   (2661 perm/sec)   p_kst 3.074468e-03   p_cons 2.928809e-01   p_joint 4.012766e-03

Joint ci ratio: 8.898022e-02	ci left: 3.847841e-03	ci right 4.208186e-03	k: 1932	n:480000
Cons ci ratio: 8.787667e-03	ci left: 2.917751e-01	ci right 2.943524e-01	k: 140670	n:480000
KS ci ratio: 1.016350e-01	ci left: 2.932515e-03	ci right 3.248530e-03	k: 1482	n:480000
GNRHR   480000 perm   182 sec   (2640 perm/sec)   p_kst 3.087500e-03   p_cons 2.930625e-01   p_joint 4.025000e-03

Joint ci ratio: 8.816342e-02	ci left: 3.841155e-03	ci right 4.197402e-03	k: 1968	n:490000
Cons ci ratio: 8.699104e-03	ci left: 2.917136e-01	ci right 2.942643e-01	k: 143564	n:490000
KS ci ratio: 1.006558e-01	ci left: 2.930354e-03	ci right 3.242914e-03	k: 1511	n:490000
GNRHR   490000 perm   187 sec   (2618 perm/sec)   p_kst 3.083673e-03   p_cons 2.929878e-01   p_joint 4.016327e-03

Joint ci ratio: 8.732499e-02	ci left: 3.838664e-03	ci right 4.191121e-03	k: 2006	n:500000
Cons ci ratio: 8.611919e-03	ci left: 2.917147e-01	ci right 2.942397e-01	k: 146488	n:500000
KS ci ratio: 9.960712e-02	ci left: 2.934144e-03	ci right 3.243658e-03	k: 1543	n:500000
GNRHR   500000 perm   198 sec   (2527 perm/sec)   p_kst 3.086000e-03   p_cons 2.929760e-01   p_joint 4.012000e-03

Outputting figure to mutsig2_images.part000000000072/GNRHR.2_999_500000_0.003086_0.29298_0.004012.png
                gene_name: GNRHR
               theta_stop: 0.100 
                    nperm: 500000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0042 

Current progress: 84 percent done.
GOLPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
GOLPH3   10000 perm   2 sec   (5254 perm/sec)   p_kst 7.928000e-01   p_cons 7.510000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.664763e-02	ci left: 7.231533e-02	ci right 7.970850e-02	k: 1519	n:20000
KS ci ratio: 1.428702e-02	ci left: 7.843891e-01	ci right 7.957264e-01	k: 15802	n:20000
GOLPH3   20000 perm   9 sec   (2196 perm/sec)   p_kst 7.901000e-01   p_cons 7.595000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLPH3.2_913_20000_0.7901_0.07595_1.png
                gene_name: GOLPH3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
GOLPH3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
GOLPH3L   10000 perm   1 sec   (6854 perm/sec)   p_kst 4.667000e-01   p_cons 5.257000e-01   p_joint 9.387000e-01

Outputting figure to mutsig2_images.part000000000072/GOLPH3L.2_874_10000_0.4667_0.5257_0.9387.png
                gene_name: GOLPH3L
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 88 percent done.
GOLT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
Cons ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
GOLT1B   10000 perm   1 sec   (7060 perm/sec)   p_kst 7.104000e-01   p_cons 2.078000e-01   p_joint 8.001000e-01

Outputting figure to mutsig2_images.part000000000072/GOLT1B.2_437_10000_0.7104_0.2078_0.8001.png
                gene_name: GOLT1B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 90 percent done.
GOPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
Cons ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
KS ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
GOPC   10000 perm   2 sec   (5105 perm/sec)   p_kst 7.565000e-01   p_cons 3.144000e-01   p_joint 6.997000e-01

Outputting figure to mutsig2_images.part000000000072/GOPC.2_1425_10000_0.7565_0.3144_0.6997.png
                gene_name: GOPC
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 92 percent done.
GORASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
GORASP2   10000 perm   2 sec   (5977 perm/sec)   p_kst 4.315000e-01   p_cons 4.726000e-01   p_joint 8.983000e-01

Outputting figure to mutsig2_images.part000000000072/GORASP2.2_1399_10000_0.4315_0.4726_0.8983.png
                gene_name: GORASP2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 94 percent done.
GOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
GOT1   10000 perm   2 sec   (4903 perm/sec)   p_kst 1.913000e-01   p_cons 2.960000e-02   p_joint 5.233000e-01

Joint ci ratio: 1.483676e-02	ci left: 7.714687e-01	ci right 7.830505e-01	k: 15546	n:20000
Cons ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
KS ci ratio: 5.699038e-02	ci left: 1.858196e-01	ci right 1.967703e-01	k: 3825	n:20000
GOT1   20000 perm   5 sec   (4428 perm/sec)   p_kst 1.912500e-01   p_cons 2.750000e-02   p_joint 7.773000e-01

Joint ci ratio: 1.210365e-02	ci left: 7.728508e-01	ci right 7.822954e-01	k: 23328	n:30000
Cons ci ratio: 1.346691e-01	ci left: 2.561418e-02	ci right 2.934475e-02	k: 823	n:30000
KS ci ratio: 4.680006e-02	ci left: 1.850788e-01	ci right 1.939814e-01	k: 5685	n:30000
GOT1   30000 perm   7 sec   (4600 perm/sec)   p_kst 1.895000e-01   p_cons 2.743333e-02   p_joint 7.776000e-01

Joint ci ratio: 1.809120e-02	ci left: 5.350505e-01	ci right 5.448437e-01	k: 21598	n:40000
Cons ci ratio: 1.168828e-01	ci left: 2.574923e-02	ci right 2.896987e-02	k: 1093	n:40000
KS ci ratio: 4.039977e-02	ci left: 1.866617e-01	ci right 1.943833e-01	k: 7620	n:40000
GOT1   40000 perm   9 sec   (4654 perm/sec)   p_kst 1.905000e-01   p_cons 2.732500e-02   p_joint 5.399500e-01

Joint ci ratio: 1.613225e-02	ci left: 5.370802e-01	ci right 5.458350e-01	k: 27073	n:50000
Cons ci ratio: 1.052778e-01	ci left: 2.555784e-02	ci right 2.841743e-02	k: 1348	n:50000
KS ci ratio: 3.623636e-02	ci left: 1.862120e-01	ci right 1.931041e-01	k: 9482	n:50000
GOT1   50000 perm   11 sec   (4663 perm/sec)   p_kst 1.896400e-01   p_cons 2.696000e-02   p_joint 5.414600e-01

Joint ci ratio: 2.031927e-03	ci left: 9.831186e-01	ci right 9.851342e-01	k: 59049	n:60000
Cons ci ratio: 9.619074e-02	ci left: 2.563629e-02	ci right 2.824307e-02	k: 1615	n:60000
KS ci ratio: 3.311434e-02	ci left: 1.861887e-01	ci right 1.924747e-01	k: 11359	n:60000
GOT1   60000 perm   13 sec   (4642 perm/sec)   p_kst 1.893167e-01   p_cons 2.691667e-02   p_joint 9.841500e-01

Outputting figure to mutsig2_images.part000000000072/GOT1.2_1278_60000_0.18932_0.026917_0.98415.png
                gene_name: GOT1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
GPATCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
Cons ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
KS ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
GPATCH3   10000 perm   2 sec   (6521 perm/sec)   p_kst 5.597000e-01   p_cons 6.012000e-01   p_joint 5.671000e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH3.2_1606_10000_0.5597_0.6012_0.5671.png
                gene_name: GPATCH3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 98 percent done.
GPATCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
Cons ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
GPATCH4   10000 perm   1 sec   (6688 perm/sec)   p_kst 1.101000e-01   p_cons 9.875000e-01   p_joint 3.722000e-01

Joint ci ratio: 2.370005e-02	ci left: 5.707687e-01	ci right 5.845087e-01	k: 11553	n:20000
Cons ci ratio: 3.236071e-03	ci left: 9.849088e-01	ci right 9.881475e-01	k: 19732	n:20000
KS ci ratio: 7.798896e-02	ci left: 1.077592e-01	ci right 1.165539e-01	k: 2242	n:20000
GPATCH4   20000 perm   5 sec   (4249 perm/sec)   p_kst 1.121000e-01   p_cons 9.866000e-01   p_joint 5.776500e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH4.2_1176_20000_0.1121_0.9866_0.57765.png
                gene_name: GPATCH4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000072
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 72 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4421994: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000073> was used as the working directory.
Started at Wed Oct 24 17:48:56 2012
Results reported at Wed Oct 24 20:49:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000073.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000073.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 73  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000073.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10616.36 sec.
    Max Memory :      5249 MB
    Max Swap   :      7740 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
73
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 73
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 73: processing genes 6515 - 6604
Calculating significance of each gene.
Using projection method.
6515	GPC2	9.020713e-01
6516	GPC3	4.852466e-01
6517	GPC4	5.162988e-01
6518	GPC5	1
6519	GPC6	5.157127e-01
6520	GPCPD1	7.410573e-01
6521	GPD1	6.120002e-01
6522	GPD1L	1.117551e-01
6523	GPD2	6.173298e-01
6524	GPER	7.749027e-01
6525	GPHA2	1
6526	GPHB5	2.396657e-02
6527	GPHN	8.174559e-01
6528	GPI	9.280456e-01
6529	GPIHBP1	1
6530	GPKOW	6.221425e-01
6531	GPLD1	7.682380e-01
6532	GPM6A	1.507893e-03
6533	GPM6B	1
6534	GPN1	1
6535	GPN2	2.043927e-01
6536	GPN3	5.944516e-01
6537	GPNMB	1
6538	GPR1	1
6539	GPR101	1.673411e-04
6540	GPR107	7.573721e-01
6541	GPR108	6.654228e-01
6542	GPR109A	1
6543	GPR109B	7.734367e-01
6544	GPR110	1
6545	GPR111	3.492599e-01
6546	GPR112	1
6547	GPR113	1
6548	GPR114	8.581742e-01
6549	GPR115	9.643948e-01
6550	GPR116	1
6551	GPR119	7.045740e-01
6552	GPR12	1
6553	GPR120	9.252558e-01
6554	GPR123	8.402562e-01
6555	GPR124	1
6556	GPR125	8.597952e-01
6557	GPR126	5.106778e-01
6558	GPR128	7.521287e-02
6559	GPR132	1
6560	GPR133	9.481661e-01
6561	GPR135	5.927253e-01
6562	GPR137	8.974143e-01
6563	GPR137B	2.823464e-01
6564	GPR137C	1
6565	GPR139	5.446900e-03
6566	GPR141	4.077232e-02
6567	GPR142	1.825237e-01
6568	GPR143	1
6569	GPR146	1
6570	GPR148	5.365205e-01
6571	GPR149	1
6572	GPR15	8.211065e-02
6573	GPR150	5.166581e-01
6574	GPR151	9.033425e-01
6575	GPR152	7.718496e-01
6576	GPR153	8.496301e-01
6577	GPR155	8.908989e-01
6578	GPR156	6.128364e-01
6579	GPR157	1
In gene GPR158 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 3419    n = 1	mu =   9.71e-07
6580	GPR158	7.959714e-01
6581	GPR160	1
6582	GPR161	1
6583	GPR162	9.102896e-01
6584	GPR17	8.166663e-01
6585	GPR171	7.979250e-01
6586	GPR172A	8.289734e-01
6587	GPR172B	8.755806e-01
6588	GPR173	8.499539e-01
6589	GPR174	2.670412e-04
6590	GPR176	8.447356e-01
6591	GPR179	9.995239e-01
6592	GPR18	1
6593	GPR180	8.910655e-01
6594	GPR182	1
6595	GPR183	3.338866e-01
6596	GPR19	1
6597	GPR20	7.010247e-01
6598	GPR21	3.494538e-01
6599	GPR22	5.652983e-02
6600	GPR25	7.283798e-01
6601	GPR26	5.442974e-03
6602	GPR27	5.602546e-01
6603	GPR3	1
6604	GPR31	1.436757e-01
Done

Running MutSig 2:
Scatter job 73: processing genes 6515 - 6604
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
Cons ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
GPR112   10000 perm   3 sec   (3113 perm/sec)   p_kst 4.630000e-02   p_cons 2.479000e-01   p_joint 3.770000e-02

Joint ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
Cons ci ratio: 4.802881e-02	ci left: 2.438122e-01	ci right 2.558606e-01	k: 4996	n:20000
KS ci ratio: 1.295859e-01	ci left: 4.090836e-02	ci right 4.662524e-02	k: 874	n:20000
GPR112   20000 perm   9 sec   (2345 perm/sec)   p_kst 4.370000e-02   p_cons 2.498000e-01   p_joint 2.250000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 4.072429e-02	ci left: 2.311379e-01	ci right 2.407799e-01	k: 7078	n:30000
KS ci ratio: 1.072028e-01	ci left: 4.037492e-02	ci right 4.498084e-02	k: 1279	n:30000
GPR112   30000 perm   12 sec   (2475 perm/sec)   p_kst 4.263333e-02   p_cons 2.359333e-01   p_joint 1.430000e-02

Joint ci ratio: 1.354803e-01	ci left: 1.910956e-02	ci right 2.191066e-02	k: 819	n:40000
Cons ci ratio: 3.510688e-02	ci left: 2.334357e-01	ci right 2.418024e-01	k: 9504	n:40000
KS ci ratio: 9.323129e-02	ci left: 4.034835e-02	ci right 4.431844e-02	k: 1692	n:40000
GPR112   40000 perm   16 sec   (2534 perm/sec)   p_kst 4.230000e-02   p_cons 2.376000e-01   p_joint 2.047500e-02

Joint ci ratio: 1.103417e-01	ci left: 2.325990e-02	ci right 2.599568e-02	k: 1230	n:50000
Cons ci ratio: 3.134392e-02	ci left: 2.345311e-01	ci right 2.420193e-01	k: 11913	n:50000
KS ci ratio: 8.316846e-02	ci left: 4.076803e-02	ci right 4.432533e-02	k: 2126	n:50000
GPR112   50000 perm   20 sec   (2556 perm/sec)   p_kst 4.252000e-02   p_cons 2.382600e-01   p_joint 2.460000e-02

Joint ci ratio: 9.588628e-02	ci left: 2.579906e-02	ci right 2.841362e-02	k: 1625	n:60000
Cons ci ratio: 2.870761e-02	ci left: 2.336682e-01	ci right 2.404906e-01	k: 14224	n:60000
KS ci ratio: 7.603738e-02	ci left: 4.080153e-02	ci right 4.404292e-02	k: 2544	n:60000
GPR112   60000 perm   23 sec   (2566 perm/sec)   p_kst 4.240000e-02   p_cons 2.370667e-01   p_joint 2.708333e-02

Outputting figure to mutsig2_images.part000000000073/GPR112.57_9335_60000_0.0424_0.23707_0.027083.png
                gene_name: GPR112
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 2 percent done.
GPR158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
GPR158   10000 perm   2 sec   (4843 perm/sec)   p_kst 1.000000e-04   p_cons 3.078000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.901843e-02	ci left: 3.288063e-01	ci right 3.419416e-01	k: 6707	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
GPR158   20000 perm   4 sec   (4450 perm/sec)   p_kst 5.000000e-05   p_cons 3.353500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.212706e-02	ci left: 3.263057e-01	ci right 3.369936e-01	k: 9949	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
GPR158   30000 perm   7 sec   (4263 perm/sec)   p_kst 3.333333e-05   p_cons 3.316333e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.773627e-02	ci left: 3.284061e-01	ci right 3.376681e-01	k: 13321	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
GPR158   40000 perm   10 sec   (4163 perm/sec)   p_kst 2.500000e-05   p_cons 3.330250e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.474177e-02	ci left: 3.300850e-01	ci right 3.383742e-01	k: 16711	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
GPR158   50000 perm   12 sec   (4092 perm/sec)   p_kst 2.000000e-05   p_cons 3.342200e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.261941e-02	ci left: 3.297938e-01	ci right 3.373556e-01	k: 20014	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
GPR158   60000 perm   15 sec   (4025 perm/sec)   p_kst 1.666667e-05   p_cons 3.335667e-01   p_joint 0

Joint ci ratio: 5.487059e-01	ci left: 5.302017e-04	ci right 9.415896e-04	k: 50	n:70000
Cons ci ratio: 2.093399e-02	ci left: 3.302352e-01	ci right 3.372357e-01	k: 23361	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
GPR158   70000 perm   18 sec   (3956 perm/sec)   p_kst 1.428571e-05   p_cons 3.337286e-01   p_joint 7.142857e-04

Joint ci ratio: 5.332610e-01	ci left: 4.962961e-04	ci right 8.664779e-04	k: 53	n:80000
Cons ci ratio: 1.958604e-02	ci left: 3.303700e-01	ci right 3.369171e-01	k: 26691	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
GPR158   80000 perm   21 sec   (3901 perm/sec)   p_kst 1.250000e-05   p_cons 3.336375e-01   p_joint 6.625000e-04

Joint ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
Cons ci ratio: 1.849848e-02	ci left: 3.297767e-01	ci right 3.359451e-01	k: 29957	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
GPR158   90000 perm   23 sec   (3843 perm/sec)   p_kst 1.111111e-05   p_cons 3.328556e-01   p_joint 6.111111e-04

Joint ci ratio: 4.976837e-01	ci left: 4.666328e-04	ci right 7.835025e-04	k: 61	n:100000
Cons ci ratio: 1.756330e-02	ci left: 3.295800e-01	ci right 3.354297e-01	k: 33250	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
GPR158   100000 perm   26 sec   (3784 perm/sec)   p_kst 1.000000e-05   p_cons 3.325000e-01   p_joint 6.100000e-04

Joint ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
Cons ci ratio: 1.674701e-02	ci left: 3.296887e-01	ci right 3.352656e-01	k: 36572	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
GPR158   110000 perm   29 sec   (3732 perm/sec)   p_kst 9.090909e-06   p_cons 3.324727e-01   p_joint 5.545455e-04

Joint ci ratio: 5.598833e-01	ci left: 2.949427e-04	ci right 5.303074e-04	k: 48	n:120000
Cons ci ratio: 1.603519e-02	ci left: 3.297762e-01	ci right 3.351152e-01	k: 39893	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
GPR158   120000 perm   33 sec   (3681 perm/sec)   p_kst 8.333333e-06   p_cons 3.324417e-01   p_joint 4.000000e-04

Joint ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
Cons ci ratio: 1.542041e-02	ci left: 3.294707e-01	ci right 3.345984e-01	k: 43164	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
GPR158   130000 perm   36 sec   (3634 perm/sec)   p_kst 7.692308e-06   p_cons 3.320308e-01   p_joint 6.923077e-04

Joint ci ratio: 4.650988e-01	ci left: 3.897946e-04	ci right 6.316783e-04	k: 70	n:140000
Cons ci ratio: 1.486484e-02	ci left: 3.294048e-01	ci right 3.343451e-01	k: 46462	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
GPR158   140000 perm   39 sec   (3587 perm/sec)   p_kst 7.142857e-06   p_cons 3.318714e-01   p_joint 5.000000e-04

Joint ci ratio: 4.555768e-01	ci left: 3.814878e-04	ci right 6.118719e-04	k: 73	n:150000
Cons ci ratio: 1.435881e-02	ci left: 3.295502e-01	ci right 3.343230e-01	k: 49790	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
GPR158   150000 perm   42 sec   (3539 perm/sec)   p_kst 6.666667e-06   p_cons 3.319333e-01   p_joint 4.866667e-04

Joint ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
Cons ci ratio: 1.390568e-02	ci left: 3.295364e-01	ci right 3.341572e-01	k: 53095	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
GPR158   160000 perm   46 sec   (3495 perm/sec)   p_kst 6.250000e-06   p_cons 3.318437e-01   p_joint 4.937500e-04

Joint ci ratio: 4.327859e-01	ci left: 3.784039e-04	ci right 5.921752e-04	k: 81	n:170000
Cons ci ratio: 1.348378e-02	ci left: 3.298259e-01	ci right 3.343092e-01	k: 56451	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
GPR158   170000 perm   49 sec   (3448 perm/sec)   p_kst 5.882353e-06   p_cons 3.320647e-01   p_joint 4.764706e-04

Joint ci ratio: 4.824288e-01	ci left: 2.787086e-04	ci right 4.602429e-04	k: 65	n:180000
Cons ci ratio: 1.309727e-02	ci left: 3.301128e-01	ci right 3.344704e-01	k: 59812	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
GPR158   180000 perm   53 sec   (3406 perm/sec)   p_kst 5.555556e-06   p_cons 3.322889e-01   p_joint 3.611111e-04

Joint ci ratio: 4.718256e-01	ci left: 2.779297e-04	ci right 4.536951e-04	k: 68	n:190000
Cons ci ratio: 1.273389e-02	ci left: 3.306601e-01	ci right 3.349029e-01	k: 63228	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
GPR158   190000 perm   56 sec   (3366 perm/sec)   p_kst 5.263158e-06   p_cons 3.327789e-01   p_joint 3.578947e-04

Joint ci ratio: 4.618921e-01	ci left: 2.772680e-04	ci right 4.477634e-04	k: 71	n:200000
Cons ci ratio: 1.241228e-02	ci left: 3.306849e-01	ci right 3.348200e-01	k: 66550	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
GPR158   200000 perm   60 sec   (3328 perm/sec)   p_kst 5.000000e-06   p_cons 3.327500e-01   p_joint 3.550000e-04

Joint ci ratio: 4.250966e-01	ci left: 3.190678e-04	ci right 4.952036e-04	k: 84	n:210000
Cons ci ratio: 1.282739e-02	ci left: 3.058404e-01	ci right 3.097935e-01	k: 64641	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
GPR158   210000 perm   64 sec   (3291 perm/sec)   p_kst 4.761905e-06   p_cons 3.078143e-01   p_joint 4.000000e-04

Joint ci ratio: 4.154342e-01	ci left: 3.208237e-04	ci right 4.927883e-04	k: 88	n:220000
Cons ci ratio: 1.253210e-02	ci left: 3.058987e-01	ci right 3.097609e-01	k: 67722	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
GPR158   220000 perm   68 sec   (3255 perm/sec)   p_kst 4.545455e-06   p_cons 3.078273e-01   p_joint 4.000000e-04

Joint ci ratio: 4.251042e-01	ci left: 2.913218e-04	ci right 4.521443e-04	k: 84	n:230000
Cons ci ratio: 1.225742e-02	ci left: 3.059139e-01	ci right 3.096910e-01	k: 70794	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
GPR158   230000 perm   71 sec   (3218 perm/sec)   p_kst 4.347826e-06   p_cons 3.078000e-01   p_joint 3.652174e-04

Joint ci ratio: 4.276313e-01	ci left: 2.754634e-04	ci right 4.286947e-04	k: 83	n:240000
Cons ci ratio: 1.200040e-02	ci left: 3.059161e-01	ci right 3.096135e-01	k: 73863	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
GPR158   240000 perm   75 sec   (3182 perm/sec)   p_kst 4.166667e-06   p_cons 3.077625e-01   p_joint 3.458333e-04

Joint ci ratio: 4.177990e-01	ci left: 2.787428e-04	ci right 4.292393e-04	k: 87	n:250000
Cons ci ratio: 1.175846e-02	ci left: 3.059350e-01	ci right 3.095575e-01	k: 76936	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
GPR158   250000 perm   79 sec   (3148 perm/sec)   p_kst 4.000000e-06   p_cons 3.077440e-01   p_joint 3.480000e-04

Joint ci ratio: 4.226337e-01	ci left: 2.611426e-04	ci right 4.042298e-04	k: 85	n:260000
Cons ci ratio: 1.152736e-02	ci left: 3.060721e-01	ci right 3.096245e-01	k: 80040	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
GPR158   260000 perm   83 sec   (3115 perm/sec)   p_kst 3.846154e-06   p_cons 3.078462e-01   p_joint 3.269231e-04

Joint ci ratio: 4.251160e-01	ci left: 2.481618e-04	ci right 3.851625e-04	k: 84	n:270000
Cons ci ratio: 1.131055e-02	ci left: 3.061553e-01	ci right 3.096414e-01	k: 83132	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
GPR158   270000 perm   88 sec   (3082 perm/sec)   p_kst 3.703704e-06   p_cons 3.078963e-01   p_joint 3.111111e-04

Joint ci ratio: 3.880664e-01	ci left: 2.938170e-04	ci right 4.382836e-04	k: 101	n:280000
Cons ci ratio: 1.111018e-02	ci left: 3.060549e-01	ci right 3.094777e-01	k: 86174	n:280000
KS ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
GPR158   280000 perm   92 sec   (3050 perm/sec)   p_kst 1.071429e-05   p_cons 3.077643e-01   p_joint 3.607143e-04

Joint ci ratio: 3.788901e-01	ci left: 2.992650e-04	ci right 4.420656e-04	k: 106	n:290000
Cons ci ratio: 1.090827e-02	ci left: 3.064232e-01	ci right 3.097875e-01	k: 89350	n:290000
KS ci ratio: 1.959983e+00	ci left: 2.133357e-06	ci right 3.023168e-05	k: 3	n:290000
GPR158   290000 perm   96 sec   (3019 perm/sec)   p_kst 1.034483e-05   p_cons 3.081034e-01   p_joint 3.655172e-04

Joint ci ratio: 3.771336e-01	ci left: 2.923059e-04	ci right 4.309791e-04	k: 107	n:300000
Cons ci ratio: 1.072233e-02	ci left: 3.065545e-01	ci right 3.098625e-01	k: 92462	n:300000
KS ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
GPR158   300000 perm   100 sec   (2989 perm/sec)   p_kst 1.000000e-05   p_cons 3.082067e-01   p_joint 3.566667e-04

Joint ci ratio: 3.686948e-01	ci left: 2.974943e-04	ci right 4.347102e-04	k: 112	n:310000
Cons ci ratio: 1.054575e-02	ci left: 3.066714e-01	ci right 3.099258e-01	k: 95572	n:310000
KS ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
GPR158   310000 perm   105 sec   (2958 perm/sec)   p_kst 9.677419e-06   p_cons 3.082968e-01   p_joint 3.612903e-04

Joint ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
Cons ci ratio: 1.038232e-02	ci left: 3.065878e-01	ci right 3.097906e-01	k: 98620	n:320000
KS ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
GPR158   320000 perm   109 sec   (2929 perm/sec)   p_kst 9.375000e-06   p_cons 3.081875e-01   p_joint 3.312500e-04

Joint ci ratio: 3.562978e-01	ci left: 3.014996e-04	ci right 4.348045e-04	k: 120	n:330000
Cons ci ratio: 1.022583e-02	ci left: 3.065279e-01	ci right 3.096815e-01	k: 101674	n:330000
KS ci ratio: 1.600316e+00	ci left: 4.919673e-06	ci right 3.535822e-05	k: 5	n:330000
GPR158   330000 perm   114 sec   (2900 perm/sec)   p_kst 1.515152e-05   p_cons 3.081030e-01   p_joint 3.636364e-04

Joint ci ratio: 3.477783e-01	ci left: 3.087190e-04	ci right 4.412169e-04	k: 126	n:340000
Cons ci ratio: 1.007621e-02	ci left: 3.064719e-01	ci right 3.095785e-01	k: 104728	n:340000
KS ci ratio: 1.600317e+00	ci left: 4.774977e-06	ci right 3.431829e-05	k: 5	n:340000
GPR158   340000 perm   118 sec   (2871 perm/sec)   p_kst 1.470588e-05   p_cons 3.080235e-01   p_joint 3.705882e-04

Joint ci ratio: 3.437424e-01	ci left: 3.077256e-04	ci right 4.379237e-04	k: 129	n:350000
Cons ci ratio: 9.926981e-03	ci left: 3.066761e-01	ci right 3.097385e-01	k: 107872	n:350000
KS ci ratio: 1.600317e+00	ci left: 4.638548e-06	ci right 3.333777e-05	k: 5	n:350000
GPR158   350000 perm   123 sec   (2843 perm/sec)   p_kst 1.428571e-05   p_cons 3.082057e-01   p_joint 3.685714e-04

Joint ci ratio: 3.505541e-01	ci left: 2.864990e-04	ci right 4.106650e-04	k: 124	n:360000
Cons ci ratio: 9.784444e-03	ci left: 3.068582e-01	ci right 3.098782e-01	k: 111012	n:360000
KS ci ratio: 1.600318e+00	ci left: 4.509699e-06	ci right 3.241173e-05	k: 5	n:360000
GPR158   360000 perm   128 sec   (2815 perm/sec)   p_kst 1.388889e-05   p_cons 3.083667e-01   p_joint 3.444444e-04

Joint ci ratio: 3.491614e-01	ci left: 2.812208e-04	ci right 4.025055e-04	k: 125	n:370000
Cons ci ratio: 9.651176e-03	ci left: 3.068851e-01	ci right 3.098639e-01	k: 114098	n:370000
KS ci ratio: 1.600318e+00	ci left: 4.387815e-06	ci right 3.153575e-05	k: 5	n:370000
GPR158   370000 perm   133 sec   (2788 perm/sec)   p_kst 1.351351e-05   p_cons 3.083730e-01   p_joint 3.378378e-04

Joint ci ratio: 3.491630e-01	ci left: 2.738201e-04	ci right 3.919136e-04	k: 125	n:380000
Cons ci ratio: 9.522621e-03	ci left: 3.069370e-01	ci right 3.098764e-01	k: 117194	n:380000
KS ci ratio: 1.600319e+00	ci left: 4.272346e-06	ci right 3.070587e-05	k: 5	n:380000
GPR158   380000 perm   138 sec   (2761 perm/sec)   p_kst 1.315789e-05   p_cons 3.084053e-01   p_joint 3.289474e-04

Joint ci ratio: 3.411340e-01	ci left: 2.808505e-04	ci right 3.985772e-04	k: 131	n:390000
Cons ci ratio: 9.402177e-03	ci left: 3.068457e-01	ci right 3.097469e-01	k: 120235	n:390000
KS ci ratio: 1.481606e+00	ci left: 5.645903e-06	ci right 3.348553e-05	k: 6	n:390000
GPR158   390000 perm   143 sec   (2736 perm/sec)   p_kst 1.538462e-05   p_cons 3.082949e-01   p_joint 3.358974e-04

Joint ci ratio: 3.789095e-01	ci left: 2.169652e-04	ci right 3.205010e-04	k: 106	n:400000
Cons ci ratio: 9.281946e-03	ci left: 3.069540e-01	ci right 3.098188e-01	k: 123354	n:400000
KS ci ratio: 1.481606e+00	ci left: 5.504755e-06	ci right 3.264840e-05	k: 6	n:400000
GPR158   400000 perm   148 sec   (2708 perm/sec)   p_kst 1.500000e-05   p_cons 3.083850e-01   p_joint 2.650000e-04

Joint ci ratio: 3.703541e-01	ci left: 2.227205e-04	ci right 3.260218e-04	k: 111	n:410000
Cons ci ratio: 9.168151e-03	ci left: 3.069670e-01	ci right 3.097967e-01	k: 126436	n:410000
KS ci ratio: 1.481606e+00	ci left: 5.370492e-06	ci right 3.185210e-05	k: 6	n:410000
GPR158   410000 perm   153 sec   (2682 perm/sec)   p_kst 1.463415e-05   p_cons 3.083805e-01   p_joint 2.707317e-04

Joint ci ratio: 3.670914e-01	ci left: 2.217383e-04	ci right 3.234606e-04	k: 113	n:420000
Cons ci ratio: 9.060363e-03	ci left: 3.068893e-01	ci right 3.096848e-01	k: 129480	n:420000
KS ci ratio: 1.481607e+00	ci left: 5.242623e-06	ci right 3.109372e-05	k: 6	n:420000
GPR158   420000 perm   158 sec   (2656 perm/sec)   p_kst 1.428571e-05   p_cons 3.082857e-01   p_joint 2.690476e-04

Joint ci ratio: 3.703565e-01	ci left: 2.123612e-04	ci right 3.108584e-04	k: 111	n:430000
Cons ci ratio: 8.952578e-03	ci left: 3.069919e-01	ci right 3.097549e-01	k: 132600	n:430000
KS ci ratio: 1.481607e+00	ci left: 5.120701e-06	ci right 3.037062e-05	k: 6	n:430000
GPR158   430000 perm   163 sec   (2631 perm/sec)   p_kst 1.395349e-05   p_cons 3.083721e-01   p_joint 2.581395e-04

Joint ci ratio: 3.687148e-01	ci left: 2.095964e-04	ci right 3.062764e-04	k: 112	n:440000
Cons ci ratio: 8.847042e-03	ci left: 3.071626e-01	ci right 3.098944e-01	k: 135752	n:440000
KS ci ratio: 1.481607e+00	ci left: 5.004321e-06	ci right 2.968038e-05	k: 6	n:440000
GPR158   440000 perm   169 sec   (2608 perm/sec)   p_kst 1.363636e-05   p_cons 3.085273e-01   p_joint 2.545455e-04

Joint ci ratio: 3.654948e-01	ci left: 2.089732e-04	ci right 3.043230e-04	k: 114	n:450000
Cons ci ratio: 8.748522e-03	ci left: 3.071617e-01	ci right 3.098629e-01	k: 138830	n:450000
KS ci ratio: 1.385915e+00	ci left: 6.254162e-06	ci right 3.205013e-05	k: 7	n:450000
GPR158   450000 perm   174 sec   (2583 perm/sec)   p_kst 1.555556e-05   p_cons 3.085111e-01   p_joint 2.533333e-04

Joint ci ratio: 3.670957e-01	ci left: 2.024563e-04	ci right 2.953343e-04	k: 113	n:460000
Cons ci ratio: 8.651855e-03	ci left: 3.072284e-01	ci right 3.099001e-01	k: 141939	n:460000
KS ci ratio: 1.385916e+00	ci left: 6.118202e-06	ci right 3.135339e-05	k: 7	n:460000
GPR158   460000 perm   180 sec   (2560 perm/sec)   p_kst 1.521739e-05   p_cons 3.085630e-01   p_joint 2.456522e-04

Joint ci ratio: 3.639176e-01	ci left: 2.020132e-04	ci right 2.936951e-04	k: 115	n:470000
Cons ci ratio: 8.558664e-03	ci left: 3.072753e-01	ci right 3.099186e-01	k: 145040	n:470000
KS ci ratio: 1.385916e+00	ci left: 5.988027e-06	ci right 3.068630e-05	k: 7	n:470000
GPR158   470000 perm   185 sec   (2537 perm/sec)   p_kst 1.489362e-05   p_cons 3.085957e-01   p_joint 2.446809e-04

Joint ci ratio: 3.720265e-01	ci left: 1.883508e-04	ci right 2.762013e-04	k: 110	n:480000
Cons ci ratio: 8.469868e-03	ci left: 3.072476e-01	ci right 3.098631e-01	k: 148106	n:480000
KS ci ratio: 1.385916e+00	ci left: 5.863276e-06	ci right 3.004701e-05	k: 7	n:480000
GPR158   480000 perm   191 sec   (2515 perm/sec)   p_kst 1.458333e-05   p_cons 3.085542e-01   p_joint 2.291667e-04

Joint ci ratio: 3.959398e-01	ci left: 1.605344e-04	ci right 2.414882e-04	k: 97	n:490000
Cons ci ratio: 8.381655e-03	ci left: 3.073292e-01	ci right 3.099180e-01	k: 151225	n:490000
KS ci ratio: 1.385917e+00	ci left: 5.743617e-06	ci right 2.943381e-05	k: 7	n:490000
GPR158   490000 perm   197 sec   (2493 perm/sec)   p_kst 1.428571e-05   p_cons 3.086224e-01   p_joint 1.979592e-04

Joint ci ratio: 3.979767e-01	ci left: 1.555233e-04	ci right 2.344599e-04	k: 96	n:500000
Cons ci ratio: 8.297347e-03	ci left: 3.073457e-01	ci right 3.099085e-01	k: 154313	n:500000
KS ci ratio: 1.306654e+00	ci left: 6.907689e-06	ci right 3.152613e-05	k: 8	n:500000
GPR158   500000 perm   202 sec   (2472 perm/sec)   p_kst 1.600000e-05   p_cons 3.086260e-01   p_joint 1.920000e-04

Joint ci ratio: 3.900156e-01	ci left: 1.595400e-04	ci right 2.384789e-04	k: 100	n:510000
Cons ci ratio: 8.214287e-03	ci left: 3.074264e-01	ci right 3.099640e-01	k: 157434	n:510000
KS ci ratio: 1.239599e+00	ci left: 8.069390e-06	ci right 3.349935e-05	k: 9	n:510000
GPR158   510000 perm   208 sec   (2451 perm/sec)   p_kst 1.764706e-05   p_cons 3.086941e-01   p_joint 1.960784e-04

Joint ci ratio: 3.900163e-01	ci left: 1.564719e-04	ci right 2.338928e-04	k: 100	n:520000
Cons ci ratio: 8.135395e-03	ci left: 3.074138e-01	ci right 3.099268e-01	k: 160508	n:520000
KS ci ratio: 1.239600e+00	ci left: 7.914209e-06	ci right 3.285514e-05	k: 9	n:520000
GPR158   520000 perm   214 sec   (2430 perm/sec)   p_kst 1.730769e-05   p_cons 3.086692e-01   p_joint 1.923077e-04

Joint ci ratio: 3.843495e-01	ci left: 1.586290e-04	ci right 2.356884e-04	k: 103	n:530000
Cons ci ratio: 8.058520e-03	ci left: 3.074131e-01	ci right 3.099022e-01	k: 163588	n:530000
KS ci ratio: 1.239600e+00	ci left: 7.764883e-06	ci right 3.223523e-05	k: 9	n:530000
GPR158   530000 perm   220 sec   (2410 perm/sec)   p_kst 1.698113e-05   p_cons 3.086566e-01   p_joint 1.943396e-04

Joint ci ratio: 3.754297e-01	ci left: 1.640667e-04	ci right 2.414630e-04	k: 108	n:540000
Cons ci ratio: 7.985066e-03	ci left: 3.073440e-01	ci right 3.098099e-01	k: 166631	n:540000
KS ci ratio: 1.239600e+00	ci left: 7.621089e-06	ci right 3.163829e-05	k: 9	n:540000
GPR158   540000 perm   226 sec   (2390 perm/sec)   p_kst 1.666667e-05   p_cons 3.085759e-01   p_joint 2.000000e-04

Joint ci ratio: 3.737196e-01	ci left: 1.627306e-04	ci right 2.390614e-04	k: 109	n:550000
Cons ci ratio: 7.912100e-03	ci left: 3.073575e-01	ci right 3.098008e-01	k: 169718	n:550000
KS ci ratio: 1.239600e+00	ci left: 7.482523e-06	ci right 3.106305e-05	k: 9	n:550000
GPR158   550000 perm   232 sec   (2370 perm/sec)   p_kst 1.636364e-05   p_cons 3.085782e-01   p_joint 1.981818e-04

Joint ci ratio: 3.703678e-01	ci left: 1.630622e-04	ci right 2.386963e-04	k: 111	n:560000
Cons ci ratio: 7.840016e-03	ci left: 3.074295e-01	ci right 3.098510e-01	k: 172838	n:560000
KS ci ratio: 1.239601e+00	ci left: 7.348906e-06	ci right 3.050836e-05	k: 9	n:560000
GPR158   560000 perm   238 sec   (2351 perm/sec)   p_kst 1.607143e-05   p_cons 3.086393e-01   p_joint 1.982143e-04

Joint ci ratio: 3.703685e-01	ci left: 1.602014e-04	ci right 2.345087e-04	k: 111	n:570000
Cons ci ratio: 7.771687e-03	ci left: 3.073992e-01	ci right 3.097992e-01	k: 175901	n:570000
KS ci ratio: 1.239601e+00	ci left: 7.219977e-06	ci right 2.997313e-05	k: 9	n:570000
GPR158   570000 perm   244 sec   (2332 perm/sec)   p_kst 1.578947e-05   p_cons 3.085982e-01   p_joint 1.947368e-04

Joint ci ratio: 3.671052e-01	ci left: 1.605681e-04	ci right 2.342319e-04	k: 113	n:580000
Cons ci ratio: 7.701536e-03	ci left: 3.075681e-01	ci right 3.099476e-01	k: 179079	n:580000
KS ci ratio: 1.181912e+00	ci left: 8.267942e-06	ci right 3.170728e-05	k: 10	n:580000
GPR158   580000 perm   251 sec   (2313 perm/sec)   p_kst 1.724138e-05   p_cons 3.087569e-01   p_joint 1.948276e-04

Joint ci ratio: 3.623679e-01	ci left: 1.624654e-04	ci right 2.358105e-04	k: 116	n:590000
Cons ci ratio: 7.637736e-03	ci left: 3.074807e-01	ci right 3.098398e-01	k: 182109	n:590000
KS ci ratio: 1.131594e+00	ci left: 9.307087e-06	ci right 3.335914e-05	k: 11	n:590000
GPR158   590000 perm   257 sec   (2296 perm/sec)   p_kst 1.864407e-05   p_cons 3.086593e-01   p_joint 1.966102e-04

Joint ci ratio: 3.623685e-01	ci left: 1.597576e-04	ci right 2.318804e-04	k: 116	n:600000
Cons ci ratio: 7.575969e-03	ci left: 3.073697e-01	ci right 3.097088e-01	k: 185123	n:600000
KS ci ratio: 1.131594e+00	ci left: 9.151968e-06	ci right 3.280316e-05	k: 11	n:600000
GPR158   600000 perm   264 sec   (2277 perm/sec)   p_kst 1.833333e-05   p_cons 3.085383e-01   p_joint 1.933333e-04

Joint ci ratio: 3.578099e-01	ci left: 1.616118e-04	ci right 2.334402e-04	k: 119	n:610000
Cons ci ratio: 7.511519e-03	ci left: 3.074982e-01	ci right 3.098183e-01	k: 188281	n:610000
KS ci ratio: 1.131594e+00	ci left: 9.001936e-06	ci right 3.226541e-05	k: 11	n:610000
GPR158   610000 perm   270 sec   (2260 perm/sec)   p_kst 1.803279e-05   p_cons 3.086574e-01   p_joint 1.950820e-04

Joint ci ratio: 3.578105e-01	ci left: 1.590051e-04	ci right 2.296751e-04	k: 119	n:620000
Cons ci ratio: 7.450938e-03	ci left: 3.074938e-01	ci right 3.097951e-01	k: 191359	n:620000
KS ci ratio: 1.131595e+00	ci left: 8.856742e-06	ci right 3.174500e-05	k: 11	n:620000
GPR158   620000 perm   276 sec   (2242 perm/sec)   p_kst 1.774194e-05   p_cons 3.086435e-01   p_joint 1.919355e-04

Joint ci ratio: 3.548655e-01	ci left: 1.593717e-04	ci right 2.294871e-04	k: 121	n:630000
Cons ci ratio: 7.390892e-03	ci left: 3.075419e-01	ci right 3.098249e-01	k: 194470	n:630000
KS ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
GPR158   630000 perm   283 sec   (2226 perm/sec)   p_kst 1.746032e-05   p_cons 3.086825e-01   p_joint 1.920635e-04

Joint ci ratio: 3.548660e-01	ci left: 1.568815e-04	ci right 2.259014e-04	k: 121	n:640000
Cons ci ratio: 7.332624e-03	ci left: 3.075683e-01	ci right 3.098334e-01	k: 197568	n:640000
KS ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
GPR158   640000 perm   290 sec   (2208 perm/sec)   p_kst 1.718750e-05   p_cons 3.087000e-01   p_joint 1.890625e-04

Joint ci ratio: 3.478095e-01	ci left: 1.614815e-04	ci right 2.307943e-04	k: 126	n:650000
Cons ci ratio: 7.275817e-03	ci left: 3.075878e-01	ci right 3.098354e-01	k: 200662	n:650000
KS ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
GPR158   650000 perm   297 sec   (2192 perm/sec)   p_kst 1.692308e-05   p_cons 3.087108e-01   p_joint 1.938462e-04

Joint ci ratio: 3.437726e-01	ci left: 1.631856e-04	ci right 2.322360e-04	k: 129	n:660000
Cons ci ratio: 7.220490e-03	ci left: 3.075962e-01	ci right 3.098267e-01	k: 203749	n:660000
KS ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
GPR158   660000 perm   303 sec   (2175 perm/sec)   p_kst 1.666667e-05   p_cons 3.087106e-01   p_joint 1.954545e-04

Joint ci ratio: 3.411583e-01	ci left: 1.634783e-04	ci right 2.320106e-04	k: 131	n:670000
Cons ci ratio: 7.168713e-03	ci left: 3.074672e-01	ci right 3.096807e-01	k: 206744	n:670000
KS ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
GPR158   670000 perm   310 sec   (2159 perm/sec)   p_kst 1.641791e-05   p_cons 3.085731e-01   p_joint 1.955224e-04

Joint ci ratio: 3.398736e-01	ci left: 1.624191e-04	ci right 2.301946e-04	k: 132	n:680000
Cons ci ratio: 7.116021e-03	ci left: 3.074625e-01	ci right 3.096597e-01	k: 209821	n:680000
KS ci ratio: 1.131596e+00	ci left: 8.075263e-06	ci right 2.894399e-05	k: 11	n:680000
GPR158   680000 perm   317 sec   (2142 perm/sec)   p_kst 1.617647e-05   p_cons 3.085603e-01   p_joint 1.941176e-04

Joint ci ratio: 3.437741e-01	ci left: 1.560905e-04	ci right 2.221390e-04	k: 129	n:690000
Cons ci ratio: 7.064714e-03	ci left: 3.074436e-01	ci right 3.096247e-01	k: 212888	n:690000
KS ci ratio: 1.131596e+00	ci left: 7.958229e-06	ci right 2.852451e-05	k: 11	n:690000
GPR158   690000 perm   325 sec   (2126 perm/sec)   p_kst 1.594203e-05   p_cons 3.085333e-01   p_joint 1.869565e-04

Joint ci ratio: 3.424597e-01	ci left: 1.551661e-04	ci right 2.205168e-04	k: 130	n:700000
Cons ci ratio: 7.014877e-03	ci left: 3.074024e-01	ci right 3.095678e-01	k: 215939	n:700000
KS ci ratio: 1.131596e+00	ci left: 7.844540e-06	ci right 2.811702e-05	k: 11	n:700000
GPR158   700000 perm   332 sec   (2110 perm/sec)   p_kst 1.571429e-05   p_cons 3.084843e-01   p_joint 1.857143e-04

Joint ci ratio: 3.373476e-01	ci left: 1.581337e-04	ci right 2.235237e-04	k: 134	n:710000
Cons ci ratio: 6.965183e-03	ci left: 3.074173e-01	ci right 3.095674e-01	k: 219029	n:710000
KS ci ratio: 1.131596e+00	ci left: 7.734053e-06	ci right 2.772101e-05	k: 11	n:710000
GPR158   710000 perm   339 sec   (2095 perm/sec)   p_kst 1.549296e-05   p_cons 3.084915e-01   p_joint 1.887324e-04

Joint ci ratio: 3.519958e-01	ci left: 1.419812e-04	ci right 2.038250e-04	k: 123	n:720000
Cons ci ratio: 6.916193e-03	ci left: 3.074526e-01	ci right 3.095878e-01	k: 222134	n:720000
KS ci ratio: 1.131596e+00	ci left: 7.626636e-06	ci right 2.733600e-05	k: 11	n:720000
GPR158   720000 perm   346 sec   (2080 perm/sec)   p_kst 1.527778e-05   p_cons 3.085194e-01   p_joint 1.708333e-04

Joint ci ratio: 3.519963e-01	ci left: 1.400362e-04	ci right 2.010329e-04	k: 123	n:730000
Cons ci ratio: 6.869788e-03	ci left: 3.073899e-01	ci right 3.095102e-01	k: 225168	n:730000
KS ci ratio: 1.131596e+00	ci left: 7.522161e-06	ci right 2.696154e-05	k: 11	n:730000
GPR158   730000 perm   353 sec   (2066 perm/sec)   p_kst 1.506849e-05   p_cons 3.084493e-01   p_joint 1.684932e-04

Joint ci ratio: 3.548706e-01	ci left: 1.356810e-04	ci right 1.953747e-04	k: 121	n:740000
Cons ci ratio: 6.822986e-03	ci left: 3.074113e-01	ci right 3.095172e-01	k: 228263	n:740000
KS ci ratio: 1.087202e+00	ci left: 8.379183e-06	ci right 2.832629e-05	k: 12	n:740000
GPR158   740000 perm   361 sec   (2051 perm/sec)   p_kst 1.621622e-05   p_cons 3.084635e-01   p_joint 1.635135e-04

Joint ci ratio: 3.534253e-01	ci left: 1.350866e-04	ci right 1.942212e-04	k: 122	n:750000
Cons ci ratio: 6.776153e-03	ci left: 3.074934e-01	ci right 3.095854e-01	k: 231404	n:750000
KS ci ratio: 1.087202e+00	ci left: 8.267460e-06	ci right 2.794861e-05	k: 12	n:750000
GPR158   750000 perm   368 sec   (2036 perm/sec)   p_kst 1.600000e-05   p_cons 3.085387e-01   p_joint 1.626667e-04

Joint ci ratio: 3.519974e-01	ci left: 1.345084e-04	ci right 1.930975e-04	k: 123	n:760000
Cons ci ratio: 6.730728e-03	ci left: 3.075445e-01	ci right 3.096228e-01	k: 234523	n:760000
KS ci ratio: 1.087202e+00	ci left: 8.158677e-06	ci right 2.758087e-05	k: 12	n:760000
GPR158   760000 perm   376 sec   (2022 perm/sec)   p_kst 1.578947e-05   p_cons 3.085829e-01   p_joint 1.618421e-04

Joint ci ratio: 3.505868e-01	ci left: 1.339456e-04	ci right 1.920026e-04	k: 124	n:770000
Cons ci ratio: 6.687771e-03	ci left: 3.074944e-01	ci right 3.095590e-01	k: 237565	n:770000
KS ci ratio: 1.087203e+00	ci left: 8.052720e-06	ci right 2.722268e-05	k: 12	n:770000
GPR158   770000 perm   383 sec   (2008 perm/sec)   p_kst 1.558442e-05   p_cons 3.085260e-01   p_joint 1.610390e-04

Joint ci ratio: 3.478152e-01	ci left: 1.345676e-04	ci right 1.923292e-04	k: 126	n:780000
Cons ci ratio: 6.644629e-03	ci left: 3.075097e-01	ci right 3.095610e-01	k: 240657	n:780000
KS ci ratio: 1.087203e+00	ci left: 7.949480e-06	ci right 2.687367e-05	k: 12	n:780000
GPR158   780000 perm   391 sec   (1994 perm/sec)   p_kst 1.538462e-05   p_cons 3.085346e-01   p_joint 1.615385e-04

Joint ci ratio: 3.534268e-01	ci left: 1.282467e-04	ci right 1.843873e-04	k: 122	n:790000
Cons ci ratio: 6.602604e-03	ci left: 3.075056e-01	ci right 3.095439e-01	k: 243734	n:790000
KS ci ratio: 1.047654e+00	ci left: 8.761993e-06	ci right 2.813958e-05	k: 13	n:790000
GPR158   790000 perm   399 sec   (1979 perm/sec)   p_kst 1.645570e-05   p_cons 3.085241e-01   p_joint 1.544304e-04

Joint ci ratio: 3.519989e-01	ci left: 1.277829e-04	ci right 1.834428e-04	k: 123	n:800000
Cons ci ratio: 6.560867e-03	ci left: 3.075342e-01	ci right 3.095597e-01	k: 246837	n:800000
KS ci ratio: 1.047654e+00	ci left: 8.652468e-06	ci right 2.778783e-05	k: 13	n:800000
GPR158   800000 perm   407 sec   (1966 perm/sec)   p_kst 1.625000e-05   p_cons 3.085463e-01   p_joint 1.537500e-04

Joint ci ratio: 3.789354e-01	ci left: 1.071421e-04	ci right 1.582743e-04	k: 106	n:810000
Cons ci ratio: 6.520156e-03	ci left: 3.075460e-01	ci right 3.095590e-01	k: 249927	n:810000
KS ci ratio: 1.047654e+00	ci left: 8.545647e-06	ci right 2.744478e-05	k: 13	n:810000
GPR158   810000 perm   415 sec   (1953 perm/sec)   p_kst 1.604938e-05   p_cons 3.085519e-01   p_joint 1.308642e-04

Joint ci ratio: 3.771771e-01	ci left: 1.069391e-04	ci right 1.576790e-04	k: 107	n:820000
Cons ci ratio: 6.478398e-03	ci left: 3.076758e-01	ci right 3.096767e-01	k: 253114	n:820000
KS ci ratio: 1.047654e+00	ci left: 8.441432e-06	ci right 2.711009e-05	k: 13	n:820000
GPR158   820000 perm   423 sec   (1940 perm/sec)   p_kst 1.585366e-05   p_cons 3.086756e-01   p_joint 1.304878e-04

Joint ci ratio: 3.771774e-01	ci left: 1.056507e-04	ci right 1.557793e-04	k: 107	n:830000
Cons ci ratio: 6.439377e-03	ci left: 3.076737e-01	ci right 3.096625e-01	k: 256194	n:830000
KS ci ratio: 1.047655e+00	ci left: 8.339727e-06	ci right 2.678346e-05	k: 13	n:830000
GPR158   830000 perm   431 sec   (1927 perm/sec)   p_kst 1.566265e-05   p_cons 3.086675e-01   p_joint 1.289157e-04

Joint ci ratio: 3.720451e-01	ci left: 1.076281e-04	ci right 1.578309e-04	k: 110	n:840000
Cons ci ratio: 6.401070e-03	ci left: 3.076705e-01	ci right 3.096474e-01	k: 259273	n:840000
KS ci ratio: 1.012130e+00	ci left: 9.111851e-06	ci right 2.796368e-05	k: 14	n:840000
GPR158   840000 perm   439 sec   (1915 perm/sec)   p_kst 1.666667e-05   p_cons 3.086583e-01   p_joint 1.309524e-04

Joint ci ratio: 3.703806e-01	ci left: 1.074286e-04	ci right 1.572598e-04	k: 111	n:850000
Cons ci ratio: 6.363578e-03	ci left: 3.076581e-01	ci right 3.096233e-01	k: 262344	n:850000
KS ci ratio: 1.012130e+00	ci left: 9.004652e-06	ci right 2.763469e-05	k: 14	n:850000
GPR158   850000 perm   447 sec   (1902 perm/sec)   p_kst 1.647059e-05   p_cons 3.086400e-01   p_joint 1.305882e-04

Joint ci ratio: 3.671171e-01	ci left: 1.082896e-04	ci right 1.579713e-04	k: 113	n:860000
Cons ci ratio: 6.325532e-03	ci left: 3.077272e-01	ci right 3.096811e-01	k: 265485	n:860000
KS ci ratio: 1.012130e+00	ci left: 8.899947e-06	ci right 2.731336e-05	k: 14	n:860000
GPR158   860000 perm   455 sec   (1890 perm/sec)   p_kst 1.627907e-05   p_cons 3.087035e-01   p_joint 1.313953e-04

Joint ci ratio: 3.671174e-01	ci left: 1.070448e-04	ci right 1.561556e-04	k: 113	n:870000
Cons ci ratio: 6.289565e-03	ci left: 3.076995e-01	ci right 3.096420e-01	k: 268543	n:870000
KS ci ratio: 1.012130e+00	ci left: 8.797648e-06	ci right 2.699942e-05	k: 14	n:870000
GPR158   870000 perm   463 sec   (1878 perm/sec)   p_kst 1.609195e-05   p_cons 3.086701e-01   p_joint 1.298851e-04

Joint ci ratio: 3.671176e-01	ci left: 1.058284e-04	ci right 1.543811e-04	k: 113	n:880000
Cons ci ratio: 6.254838e-03	ci left: 3.076293e-01	ci right 3.095606e-01	k: 271563	n:880000
KS ci ratio: 1.012130e+00	ci left: 8.697674e-06	ci right 2.669261e-05	k: 14	n:880000
GPR158   880000 perm   472 sec   (1866 perm/sec)   p_kst 1.590909e-05   p_cons 3.085943e-01   p_joint 1.284091e-04

Joint ci ratio: 4.202473e-01	ci left: 7.729160e-05	ci right 1.193349e-04	k: 86	n:890000
Cons ci ratio: 6.219860e-03	ci left: 3.076168e-01	ci right 3.095372e-01	k: 274633	n:890000
KS ci ratio: 1.012131e+00	ci left: 8.599947e-06	ci right 2.639269e-05	k: 14	n:890000
GPR158   890000 perm   480 sec   (1854 perm/sec)   p_kst 1.573034e-05   p_cons 3.085764e-01   p_joint 9.662921e-05

Joint ci ratio: 2.483854e-01	ci left: 2.423286e-04	ci right 3.120651e-04	k: 248	n:900000
Cons ci ratio: 6.186768e-03	ci left: 3.075148e-01	ci right 3.094243e-01	k: 277622	n:900000
KS ci ratio: 9.799907e-01	ci left: 9.328236e-06	ci right 2.748898e-05	k: 15	n:900000
GPR158   900000 perm   488 sec   (1843 perm/sec)   p_kst 1.666667e-05   p_cons 3.084689e-01   p_joint 2.755556e-04

Joint ci ratio: 2.473939e-01	ci left: 2.417269e-04	ci right 3.109699e-04	k: 250	n:910000
Cons ci ratio: 6.152328e-03	ci left: 3.075445e-01	ci right 3.094435e-01	k: 280729	n:910000
KS ci ratio: 9.799908e-01	ci left: 9.225727e-06	ci right 2.718691e-05	k: 15	n:910000
GPR158   910000 perm   497 sec   (1831 perm/sec)   p_kst 1.648352e-05   p_cons 3.084934e-01   p_joint 2.747253e-04

Joint ci ratio: 2.469028e-01	ci left: 2.401191e-04	ci right 3.087439e-04	k: 251	n:920000
Cons ci ratio: 6.118814e-03	ci left: 3.075487e-01	ci right 3.094373e-01	k: 283813	n:920000
KS ci ratio: 9.799909e-01	ci left: 9.125448e-06	ci right 2.689140e-05	k: 15	n:920000
GPR158   920000 perm   505 sec   (1820 perm/sec)   p_kst 1.630435e-05   p_cons 3.084924e-01   p_joint 2.728261e-04

Joint ci ratio: 2.459290e-01	ci left: 2.395549e-04	ci right 3.077072e-04	k: 253	n:930000
Cons ci ratio: 6.086272e-03	ci left: 3.075227e-01	ci right 3.094011e-01	k: 286869	n:930000
KS ci ratio: 9.799910e-01	ci left: 9.027324e-06	ci right 2.660225e-05	k: 15	n:930000
GPR158   930000 perm   514 sec   (1809 perm/sec)   p_kst 1.612903e-05   p_cons 3.084613e-01   p_joint 2.720430e-04

Joint ci ratio: 2.435433e-01	ci left: 2.419994e-04	ci right 3.100784e-04	k: 258	n:940000
Cons ci ratio: 6.055286e-03	ci left: 3.074239e-01	ci right 3.092921e-01	k: 289856	n:940000
KS ci ratio: 9.799911e-01	ci left: 8.931288e-06	ci right 2.631925e-05	k: 15	n:940000
GPR158   940000 perm   523 sec   (1798 perm/sec)   p_kst 1.595745e-05   p_cons 3.083574e-01   p_joint 2.744681e-04

Joint ci ratio: 2.403168e-01	ci left: 2.463739e-04	ci right 3.146285e-04	k: 265	n:950000
Cons ci ratio: 6.024039e-03	ci left: 3.073788e-01	ci right 3.092371e-01	k: 292892	n:950000
KS ci ratio: 9.799912e-01	ci left: 8.837275e-06	ci right 2.604220e-05	k: 15	n:950000
GPR158   950000 perm   532 sec   (1787 perm/sec)   p_kst 1.578947e-05   p_cons 3.083074e-01   p_joint 2.789474e-04

Joint ci ratio: 2.389730e-01	ci left: 2.467449e-04	ci right 3.146634e-04	k: 268	n:960000
Cons ci ratio: 5.993608e-03	ci left: 3.073107e-01	ci right 3.091592e-01	k: 295905	n:960000
KS ci ratio: 9.799913e-01	ci left: 8.745219e-06	ci right 2.577093e-05	k: 15	n:960000
GPR158   960000 perm   541 sec   (1776 perm/sec)   p_kst 1.562500e-05   p_cons 3.082344e-01   p_joint 2.791667e-04

Joint ci ratio: 2.407707e-01	ci left: 2.403252e-04	ci right 3.070485e-04	k: 264	n:970000
Cons ci ratio: 5.963301e-03	ci left: 3.072678e-01	ci right 3.091066e-01	k: 298941	n:970000
KS ci ratio: 9.799914e-01	ci left: 8.655062e-06	ci right 2.550525e-05	k: 15	n:970000
GPR158   970000 perm   550 sec   (1765 perm/sec)   p_kst 1.546392e-05   p_cons 3.081866e-01   p_joint 2.721649e-04

Joint ci ratio: 2.394192e-01	ci left: 2.407500e-04	ci right 3.071604e-04	k: 267	n:980000
Cons ci ratio: 5.933165e-03	ci left: 3.072461e-01	ci right 3.090754e-01	k: 301997	n:980000
KS ci ratio: 9.799915e-01	ci left: 8.566745e-06	ci right 2.524500e-05	k: 15	n:980000
GPR158   980000 perm   559 sec   (1755 perm/sec)   p_kst 1.530612e-05   p_cons 3.081602e-01   p_joint 2.724490e-04

Joint ci ratio: 2.416853e-01	ci left: 2.335719e-04	ci right 2.987036e-04	k: 262	n:990000
Cons ci ratio: 5.902126e-03	ci left: 3.073228e-01	ci right 3.091430e-01	k: 305150	n:990000
KS ci ratio: 9.507310e-01	ci left: 9.237787e-06	ci right 2.624532e-05	k: 16	n:990000
GPR158   990000 perm   568 sec   (1744 perm/sec)   p_kst 1.616162e-05   p_cons 3.082323e-01   p_joint 2.646465e-04

Joint ci ratio: 2.394199e-01	ci left: 2.359349e-04	ci right 3.010173e-04	k: 267	n:1000000
Cons ci ratio: 5.873537e-03	ci left: 3.072551e-01	ci right 3.090660e-01	k: 308160	n:1000000
KS ci ratio: 9.507311e-01	ci left: 9.145409e-06	ci right 2.598287e-05	k: 16	n:1000000
GPR158   1000000 perm   577 sec   (1733 perm/sec)   p_kst 1.600000e-05   p_cons 3.081600e-01   p_joint 2.670000e-04

Joint ci ratio: 2.380910e-01	ci left: 2.363915e-04	ci right 3.011845e-04	k: 270	n:1010000
Cons ci ratio: 5.845509e-03	ci left: 3.071779e-01	ci right 3.089797e-01	k: 311159	n:1010000
KS ci ratio: 9.507312e-01	ci left: 9.054860e-06	ci right 2.572561e-05	k: 16	n:1010000
GPR158   1010000 perm   586 sec   (1723 perm/sec)   p_kst 1.584158e-05   p_cons 3.080782e-01   p_joint 2.673267e-04

Joint ci ratio: 2.376531e-01	ci left: 2.349959e-04	ci right 2.992705e-04	k: 271	n:1020000
Cons ci ratio: 5.817504e-03	ci left: 3.071296e-01	ci right 3.089225e-01	k: 314186	n:1020000
KS ci ratio: 9.507313e-01	ci left: 8.966087e-06	ci right 2.547340e-05	k: 16	n:1020000
GPR158   1020000 perm   595 sec   (1713 perm/sec)   p_kst 1.568627e-05   p_cons 3.080255e-01   p_joint 2.656863e-04

Joint ci ratio: 2.363532e-01	ci left: 2.354541e-04	ci right 2.994502e-04	k: 274	n:1030000
Cons ci ratio: 5.789501e-03	ci left: 3.071114e-01	ci right 3.088955e-01	k: 317243	n:1030000
KS ci ratio: 9.507313e-01	ci left: 8.879037e-06	ci right 2.522609e-05	k: 16	n:1030000
GPR158   1030000 perm   605 sec   (1702 perm/sec)   p_kst 1.553398e-05   p_cons 3.080029e-01   p_joint 2.660194e-04

Joint ci ratio: 2.346527e-01	ci left: 2.368093e-04	ci right 3.006435e-04	k: 278	n:1040000
Cons ci ratio: 5.761133e-03	ci left: 3.071502e-01	ci right 3.089258e-01	k: 320359	n:1040000
KS ci ratio: 9.507314e-01	ci left: 8.793662e-06	ci right 2.498353e-05	k: 16	n:1040000
GPR158   1040000 perm   615 sec   (1692 perm/sec)   p_kst 1.538462e-05   p_cons 3.080375e-01   p_joint 2.673077e-04

Joint ci ratio: 2.342335e-01	ci left: 2.354504e-04	ci right 2.987885e-04	k: 279	n:1050000
Cons ci ratio: 5.733548e-03	ci left: 3.071608e-01	ci right 3.089279e-01	k: 323446	n:1050000
KS ci ratio: 9.507315e-01	ci left: 8.709912e-06	ci right 2.474559e-05	k: 16	n:1050000
GPR158   1050000 perm   624 sec   (1682 perm/sec)   p_kst 1.523810e-05   p_cons 3.080438e-01   p_joint 2.657143e-04

Joint ci ratio: 2.338165e-01	ci left: 2.341173e-04	ci right 2.969684e-04	k: 280	n:1060000
Cons ci ratio: 5.706180e-03	ci left: 3.071843e-01	ci right 3.089431e-01	k: 326547	n:1060000
KS ci ratio: 9.507316e-01	ci left: 8.627743e-06	ci right 2.451215e-05	k: 16	n:1060000
GPR158   1060000 perm   634 sec   (1673 perm/sec)   p_kst 1.509434e-05   p_cons 3.080632e-01   p_joint 2.641509e-04

Joint ci ratio: 2.325782e-01	ci left: 2.345692e-04	ci right 2.971602e-04	k: 283	n:1070000
Cons ci ratio: 5.680233e-03	ci left: 3.071300e-01	ci right 3.088804e-01	k: 329565	n:1070000
KS ci ratio: 9.507317e-01	ci left: 8.547110e-06	ci right 2.428306e-05	k: 16	n:1070000
GPR158   1070000 perm   643 sec   (1663 perm/sec)   p_kst 1.495327e-05   p_cons 3.080047e-01   p_joint 2.644860e-04

Joint ci ratio: 2.444937e-01	ci left: 2.088901e-04	ci right 2.679188e-04	k: 256	n:1080000
Cons ci ratio: 5.653740e-03	ci left: 3.071442e-01	ci right 3.088865e-01	k: 332656	n:1080000
KS ci ratio: 9.507317e-01	ci left: 8.467970e-06	ci right 2.405822e-05	k: 16	n:1080000
GPR158   1080000 perm   653 sec   (1654 perm/sec)   p_kst 1.481481e-05   p_cons 3.080148e-01   p_joint 2.370370e-04

Joint ci ratio: 2.440195e-01	ci left: 2.078349e-04	ci right 2.664343e-04	k: 257	n:1090000
Cons ci ratio: 5.628135e-03	ci left: 3.071187e-01	ci right 3.088530e-01	k: 335704	n:1090000
KS ci ratio: 9.507318e-01	ci left: 8.390282e-06	ci right 2.383750e-05	k: 16	n:1090000
GPR158   1090000 perm   663 sec   (1645 perm/sec)   p_kst 1.467890e-05   p_cons 3.079853e-01   p_joint 2.357798e-04

Joint ci ratio: 2.421495e-01	ci left: 2.093604e-04	ci right 2.678696e-04	k: 261	n:1100000
Cons ci ratio: 5.603759e-03	ci left: 3.070265e-01	ci right 3.087527e-01	k: 338678	n:1100000
KS ci ratio: 9.507319e-01	ci left: 8.314006e-06	ci right 2.362080e-05	k: 16	n:1100000
GPR158   1100000 perm   673 sec   (1635 perm/sec)   p_kst 1.454545e-05   p_cons 3.078891e-01   p_joint 2.372727e-04

Joint ci ratio: 2.412305e-01	ci left: 2.091670e-04	ci right 2.673671e-04	k: 263	n:1110000
Cons ci ratio: 5.579084e-03	ci left: 3.069828e-01	ci right 3.087011e-01	k: 341704	n:1110000
KS ci ratio: 9.507319e-01	ci left: 8.239105e-06	ci right 2.340800e-05	k: 16	n:1110000
GPR158   1110000 perm   683 sec   (1626 perm/sec)   p_kst 1.441441e-05   p_cons 3.078414e-01   p_joint 2.369369e-04

Joint ci ratio: 2.636616e-01	ci left: 1.713302e-04	ci right 2.241685e-04	k: 220	n:1120000
Cons ci ratio: 5.554091e-03	ci left: 3.069889e-01	ci right 3.086996e-01	k: 344785	n:1120000
KS ci ratio: 9.507320e-01	ci left: 8.165541e-06	ci right 2.319900e-05	k: 16	n:1120000
GPR158   1120000 perm   693 sec   (1617 perm/sec)   p_kst 1.428571e-05   p_cons 3.078438e-01   p_joint 1.964286e-04

Joint ci ratio: 2.624766e-01	ci left: 1.714672e-04	ci right 2.240711e-04	k: 222	n:1130000
Cons ci ratio: 5.529868e-03	ci left: 3.069614e-01	ci right 3.086644e-01	k: 347828	n:1130000
KS ci ratio: 9.507321e-01	ci left: 8.093280e-06	ci right 2.299370e-05	k: 16	n:1130000
GPR158   1130000 perm   703 sec   (1608 perm/sec)   p_kst 1.415929e-05   p_cons 3.078124e-01   p_joint 1.964602e-04

Joint ci ratio: 2.613074e-01	ci left: 1.716023e-04	ci right 2.239749e-04	k: 224	n:1140000
Cons ci ratio: 5.505755e-03	ci left: 3.069501e-01	ci right 3.086456e-01	k: 350889	n:1140000
KS ci ratio: 9.507321e-01	ci left: 8.022286e-06	ci right 2.279200e-05	k: 16	n:1140000
GPR158   1140000 perm   713 sec   (1599 perm/sec)   p_kst 1.403509e-05   p_cons 3.077974e-01   p_joint 1.964912e-04

Joint ci ratio: 2.636623e-01	ci left: 1.668606e-04	ci right 2.183207e-04	k: 220	n:1150000
Cons ci ratio: 5.482179e-03	ci left: 3.069217e-01	ci right 3.086097e-01	k: 353930	n:1150000
KS ci ratio: 9.507322e-01	ci left: 7.952527e-06	ci right 2.259381e-05	k: 16	n:1150000
GPR158   1150000 perm   723 sec   (1590 perm/sec)   p_kst 1.391304e-05   p_cons 3.077652e-01   p_joint 1.913043e-04

Joint ci ratio: 2.636625e-01	ci left: 1.654222e-04	ci right 2.164387e-04	k: 220	n:1160000
Cons ci ratio: 5.458582e-03	ci left: 3.069187e-01	ci right 3.085995e-01	k: 357000	n:1160000
KS ci ratio: 9.507323e-01	ci left: 7.883970e-06	ci right 2.239904e-05	k: 16	n:1160000
GPR158   1160000 perm   733 sec   (1581 perm/sec)   p_kst 1.379310e-05   p_cons 3.077586e-01   p_joint 1.896552e-04

Joint ci ratio: 2.624775e-01	ci left: 1.656050e-04	ci right 2.164107e-04	k: 222	n:1170000
Cons ci ratio: 5.434666e-03	ci left: 3.069645e-01	ci right 3.086381e-01	k: 360127	n:1170000
KS ci ratio: 9.507323e-01	ci left: 7.816586e-06	ci right 2.220760e-05	k: 16	n:1170000
GPR158   1170000 perm   744 sec   (1573 perm/sec)   p_kst 1.367521e-05   p_cons 3.078009e-01   p_joint 1.897436e-04

Joint ci ratio: 2.613083e-01	ci left: 1.657852e-04	ci right 2.163826e-04	k: 224	n:1180000
Cons ci ratio: 5.411686e-03	ci left: 3.069604e-01	ci right 3.086269e-01	k: 363196	n:1180000
KS ci ratio: 9.507324e-01	ci left: 7.750343e-06	ci right 2.201940e-05	k: 16	n:1180000
GPR158   1180000 perm   754 sec   (1565 perm/sec)   p_kst 1.355932e-05   p_cons 3.077932e-01   p_joint 1.898305e-04

Joint ci ratio: 2.613085e-01	ci left: 1.643920e-04	ci right 2.145643e-04	k: 224	n:1190000
Cons ci ratio: 5.388049e-03	ci left: 3.070312e-01	ci right 3.086908e-01	k: 366354	n:1190000
KS ci ratio: 9.507325e-01	ci left: 7.685214e-06	ci right 2.183436e-05	k: 16	n:1190000
GPR158   1190000 perm   765 sec   (1556 perm/sec)   p_kst 1.344538e-05   p_cons 3.078605e-01   p_joint 1.882353e-04

Joint ci ratio: 2.601548e-01	ci left: 1.645799e-04	ci right 2.145516e-04	k: 226	n:1200000
Cons ci ratio: 5.365705e-03	ci left: 3.070225e-01	ci right 3.086751e-01	k: 369418	n:1200000
KS ci ratio: 9.507325e-01	ci left: 7.621171e-06	ci right 2.165241e-05	k: 16	n:1200000
GPR158   1200000 perm   775 sec   (1548 perm/sec)   p_kst 1.333333e-05   p_cons 3.078483e-01   p_joint 1.883333e-04

Joint ci ratio: 2.601550e-01	ci left: 1.632197e-04	ci right 2.127785e-04	k: 226	n:1210000
Cons ci ratio: 5.343243e-03	ci left: 3.070453e-01	ci right 3.086911e-01	k: 372520	n:1210000
KS ci ratio: 9.507326e-01	ci left: 7.558186e-06	ci right 2.147346e-05	k: 16	n:1210000
GPR158   1210000 perm   786 sec   (1540 perm/sec)   p_kst 1.322314e-05   p_cons 3.078678e-01   p_joint 1.867769e-04

Joint ci ratio: 2.590165e-01	ci left: 1.634145e-04	ci right 2.127801e-04	k: 228	n:1220000
Cons ci ratio: 5.321348e-03	ci left: 3.070449e-01	ci right 3.086839e-01	k: 375594	n:1220000
KS ci ratio: 9.507326e-01	ci left: 7.496233e-06	ci right 2.129745e-05	k: 16	n:1220000
GPR158   1220000 perm   797 sec   (1531 perm/sec)   p_kst 1.311475e-05   p_cons 3.078639e-01   p_joint 1.868852e-04

Joint ci ratio: 2.578927e-01	ci left: 1.636066e-04	ci right 2.127813e-04	k: 230	n:1230000
Cons ci ratio: 5.298759e-03	ci left: 3.071216e-01	ci right 3.087541e-01	k: 378763	n:1230000
KS ci ratio: 9.507327e-01	ci left: 7.435288e-06	ci right 2.112430e-05	k: 16	n:1230000
GPR158   1230000 perm   807 sec   (1523 perm/sec)   p_kst 1.300813e-05   p_cons 3.079374e-01   p_joint 1.869919e-04

Joint ci ratio: 2.551459e-01	ci left: 1.660603e-04	ci right 2.153563e-04	k: 235	n:1240000
Cons ci ratio: 5.277813e-03	ci left: 3.070875e-01	ci right 3.087134e-01	k: 381796	n:1240000
KS ci ratio: 9.239458e-01	ci left: 7.986412e-06	ci right 2.195043e-05	k: 17	n:1240000
GPR158   1240000 perm   818 sec   (1515 perm/sec)   p_kst 1.370968e-05   p_cons 3.079000e-01   p_joint 1.895161e-04

Joint ci ratio: 2.530105e-01	ci left: 1.677280e-04	ci right 2.170367e-04	k: 239	n:1250000
Cons ci ratio: 5.256787e-03	ci left: 3.070804e-01	ci right 3.086997e-01	k: 384862	n:1250000
KS ci ratio: 9.239458e-01	ci left: 7.922520e-06	ci right 2.177483e-05	k: 17	n:1250000
GPR158   1250000 perm   829 sec   (1507 perm/sec)   p_kst 1.360000e-05   p_cons 3.078896e-01   p_joint 1.912000e-04

Joint ci ratio: 2.530107e-01	ci left: 1.663969e-04	ci right 2.153142e-04	k: 239	n:1260000
Cons ci ratio: 5.235855e-03	ci left: 3.070861e-01	ci right 3.086989e-01	k: 387944	n:1260000
KS ci ratio: 9.239459e-01	ci left: 7.859643e-06	ci right 2.160201e-05	k: 17	n:1260000
GPR158   1260000 perm   840 sec   (1500 perm/sec)   p_kst 1.349206e-05   p_cons 3.078921e-01   p_joint 1.896825e-04

Joint ci ratio: 2.519630e-01	ci left: 1.665618e-04	ci right 2.152931e-04	k: 241	n:1270000
Cons ci ratio: 5.214786e-03	ci left: 3.071232e-01	ci right 3.087297e-01	k: 391066	n:1270000
KS ci ratio: 9.239459e-01	ci left: 7.797756e-06	ci right 2.143192e-05	k: 17	n:1270000
GPR158   1270000 perm   851 sec   (1492 perm/sec)   p_kst 1.338583e-05   p_cons 3.079260e-01   p_joint 1.897638e-04

Joint ci ratio: 2.509283e-01	ci left: 1.667246e-04	ci right 2.152719e-04	k: 243	n:1280000
Cons ci ratio: 5.194873e-03	ci left: 3.070855e-01	ci right 3.086857e-01	k: 394093	n:1280000
KS ci ratio: 9.239460e-01	ci left: 7.736836e-06	ci right 2.126448e-05	k: 17	n:1280000
GPR158   1280000 perm   862 sec   (1484 perm/sec)   p_kst 1.328125e-05   p_cons 3.078852e-01   p_joint 1.898437e-04

Joint ci ratio: 2.493997e-01	ci left: 1.676119e-04	ci right 2.160742e-04	k: 246	n:1290000
Cons ci ratio: 5.175027e-03	ci left: 3.070616e-01	ci right 3.086555e-01	k: 397137	n:1290000
KS ci ratio: 9.239461e-01	ci left: 7.676860e-06	ci right 2.109964e-05	k: 17	n:1290000
GPR158   1290000 perm   874 sec   (1477 perm/sec)   p_kst 1.317829e-05   p_cons 3.078581e-01   p_joint 1.906977e-04

Joint ci ratio: 2.483960e-01	ci left: 1.677651e-04	ci right 2.160463e-04	k: 248	n:1300000
Cons ci ratio: 5.154188e-03	ci left: 3.071388e-01	ci right 3.087267e-01	k: 400312	n:1300000
KS ci ratio: 9.239461e-01	ci left: 7.617807e-06	ci right 2.093734e-05	k: 17	n:1300000
GPR158   1300000 perm   885 sec   (1469 perm/sec)   p_kst 1.307692e-05   p_cons 3.079323e-01   p_joint 1.907692e-04

Joint ci ratio: 2.488966e-01	ci left: 1.657687e-04	ci right 2.135863e-04	k: 247	n:1310000
Cons ci ratio: 5.134665e-03	ci left: 3.071263e-01	ci right 3.087081e-01	k: 403371	n:1310000
KS ci ratio: 9.239462e-01	ci left: 7.559656e-06	ci right 2.077751e-05	k: 17	n:1310000
GPR158   1310000 perm   896 sec   (1462 perm/sec)   p_kst 1.297710e-05   p_cons 3.079168e-01   p_joint 1.885496e-04

Joint ci ratio: 2.519639e-01	ci left: 1.602526e-04	ci right 2.071381e-04	k: 241	n:1320000
Cons ci ratio: 5.115043e-03	ci left: 3.071406e-01	ci right 3.087163e-01	k: 406465	n:1320000
KS ci ratio: 9.239462e-01	ci left: 7.502386e-06	ci right 2.062011e-05	k: 17	n:1320000
GPR158   1320000 perm   907 sec   (1455 perm/sec)   p_kst 1.287879e-05   p_cons 3.079280e-01   p_joint 1.825758e-04

Joint ci ratio: 2.636657e-01	ci left: 1.442778e-04	ci right 1.887739e-04	k: 220	n:1330000
Cons ci ratio: 5.095780e-03	ci left: 3.071433e-01	ci right 3.087132e-01	k: 409544	n:1330000
KS ci ratio: 9.239463e-01	ci left: 7.445977e-06	ci right 2.046507e-05	k: 17	n:1330000
GPR158   1330000 perm   919 sec   (1447 perm/sec)   p_kst 1.278195e-05   p_cons 3.079278e-01   p_joint 1.654135e-04

Joint ci ratio: 2.630713e-01	ci left: 1.438981e-04	ci right 1.881606e-04	k: 221	n:1340000
Cons ci ratio: 5.076920e-03	ci left: 3.071304e-01	ci right 3.086943e-01	k: 412602	n:1340000
KS ci ratio: 9.239463e-01	ci left: 7.390410e-06	ci right 2.031235e-05	k: 17	n:1340000
GPR158   1340000 perm   930 sec   (1440 perm/sec)   p_kst 1.268657e-05   p_cons 3.079119e-01   p_joint 1.649254e-04

Joint ci ratio: 2.613115e-01	ci left: 1.449083e-04	ci right 1.891347e-04	k: 224	n:1350000
Cons ci ratio: 5.058302e-03	ci left: 3.071147e-01	ci right 3.086728e-01	k: 415656	n:1350000
KS ci ratio: 9.239464e-01	ci left: 7.335666e-06	ci right 2.016188e-05	k: 17	n:1350000
GPR158   1350000 perm   942 sec   (1433 perm/sec)   p_kst 1.259259e-05   p_cons 3.078933e-01   p_joint 1.659259e-04

Joint ci ratio: 2.613116e-01	ci left: 1.438428e-04	ci right 1.877441e-04	k: 224	n:1360000
Cons ci ratio: 5.039575e-03	ci left: 3.071257e-01	ci right 3.086781e-01	k: 418746	n:1360000
KS ci ratio: 9.239464e-01	ci left: 7.281727e-06	ci right 2.001364e-05	k: 17	n:1360000
GPR158   1360000 perm   953 sec   (1426 perm/sec)   p_kst 1.250000e-05   p_cons 3.079015e-01   p_joint 1.647059e-04

Joint ci ratio: 2.636664e-01	ci left: 1.400652e-04	ci right 1.832623e-04	k: 220	n:1370000
Cons ci ratio: 5.021046e-03	ci left: 3.071373e-01	ci right 3.086840e-01	k: 421837	n:1370000
KS ci ratio: 9.239465e-01	ci left: 7.228576e-06	ci right 1.986755e-05	k: 17	n:1370000
GPR158   1370000 perm   965 sec   (1420 perm/sec)   p_kst 1.240876e-05   p_cons 3.079102e-01   p_joint 1.605839e-04

Joint ci ratio: 2.613119e-01	ci left: 1.417581e-04	ci right 1.850232e-04	k: 224	n:1380000
Cons ci ratio: 5.002677e-03	ci left: 3.071523e-01	ci right 3.086934e-01	k: 424933	n:1380000
KS ci ratio: 9.239465e-01	ci left: 7.176194e-06	ci right 1.972358e-05	k: 17	n:1380000
GPR158   1380000 perm   977 sec   (1413 perm/sec)   p_kst 1.231884e-05   p_cons 3.079225e-01   p_joint 1.623188e-04

Joint ci ratio: 2.613121e-01	ci left: 1.407383e-04	ci right 1.836921e-04	k: 224	n:1390000
Cons ci ratio: 4.985400e-03	ci left: 3.070909e-01	ci right 3.086264e-01	k: 427923	n:1390000
KS ci ratio: 9.239465e-01	ci left: 7.124567e-06	ci right 1.958169e-05	k: 17	n:1390000
GPR158   1390000 perm   989 sec   (1405 perm/sec)   p_kst 1.223022e-05   p_cons 3.078583e-01   p_joint 1.611511e-04

Joint ci ratio: 2.607334e-01	ci left: 1.404006e-04	ci right 1.831409e-04	k: 225	n:1400000
Cons ci ratio: 4.967693e-03	ci left: 3.070826e-01	ci right 3.086125e-01	k: 430986	n:1400000
KS ci ratio: 9.239466e-01	ci left: 7.073677e-06	ci right 1.944182e-05	k: 17	n:1400000
GPR158   1400000 perm   1001 sec   (1399 perm/sec)   p_kst 1.214286e-05   p_cons 3.078471e-01   p_joint 1.607143e-04

Joint ci ratio: 2.595873e-01	ci left: 1.407308e-04	ci right 1.833528e-04	k: 227	n:1410000
Cons ci ratio: 4.950140e-03	ci left: 3.070771e-01	ci right 3.086017e-01	k: 434053	n:1410000
KS ci ratio: 9.239466e-01	ci left: 7.023509e-06	ci right 1.930393e-05	k: 17	n:1410000
GPR158   1410000 perm   1013 sec   (1392 perm/sec)   p_kst 1.205674e-05   p_cons 3.078390e-01   p_joint 1.609929e-04

Joint ci ratio: 2.584561e-01	ci left: 1.410567e-04	ci right 1.835612e-04	k: 229	n:1420000
Cons ci ratio: 4.932642e-03	ci left: 3.070831e-01	ci right 3.086022e-01	k: 437136	n:1420000
KS ci ratio: 9.239467e-01	ci left: 6.974048e-06	ci right 1.916799e-05	k: 17	n:1420000
GPR158   1420000 perm   1025 sec   (1385 perm/sec)   p_kst 1.197183e-05   p_cons 3.078423e-01   p_joint 1.612676e-04

Joint ci ratio: 2.556915e-01	ci left: 1.433416e-04	ci right 1.859989e-04	k: 234	n:1430000
Cons ci ratio: 4.915070e-03	ci left: 3.071113e-01	ci right 3.086252e-01	k: 440251	n:1430000
KS ci ratio: 9.239467e-01	ci left: 6.925278e-06	ci right 1.903395e-05	k: 17	n:1430000
GPR158   1430000 perm   1037 sec   (1379 perm/sec)   p_kst 1.188811e-05   p_cons 3.078678e-01   p_joint 1.636364e-04

Joint ci ratio: 2.546103e-01	ci left: 1.436462e-04	ci right 1.861847e-04	k: 236	n:1440000
Cons ci ratio: 4.897381e-03	ci left: 3.071655e-01	ci right 3.086742e-01	k: 443404	n:1440000
KS ci ratio: 9.239468e-01	ci left: 6.877186e-06	ci right 1.890177e-05	k: 17	n:1440000
GPR158   1440000 perm   1049 sec   (1373 perm/sec)   p_kst 1.180556e-05   p_cons 3.079194e-01   p_joint 1.638889e-04

Joint ci ratio: 2.535427e-01	ci left: 1.439470e-04	ci right 1.863676e-04	k: 238	n:1450000
Cons ci ratio: 4.880679e-03	ci left: 3.071494e-01	ci right 3.086528e-01	k: 446456	n:1450000
KS ci ratio: 9.239468e-01	ci left: 6.829757e-06	ci right 1.877141e-05	k: 17	n:1450000
GPR158   1450000 perm   1061 sec   (1366 perm/sec)   p_kst 1.172414e-05   p_cons 3.079007e-01   p_joint 1.641379e-04

Joint ci ratio: 2.530140e-01	ci left: 1.436025e-04	ci right 1.858195e-04	k: 239	n:1460000
Cons ci ratio: 4.863967e-03	ci left: 3.071492e-01	ci right 3.086475e-01	k: 449531	n:1460000
KS ci ratio: 9.239468e-01	ci left: 6.782977e-06	ci right 1.864284e-05	k: 17	n:1460000
GPR158   1460000 perm   1074 sec   (1360 perm/sec)   p_kst 1.164384e-05   p_cons 3.078979e-01   p_joint 1.636986e-04

Joint ci ratio: 2.530142e-01	ci left: 1.426256e-04	ci right 1.845554e-04	k: 239	n:1470000
Cons ci ratio: 4.846373e-03	ci left: 3.072415e-01	ci right 3.087348e-01	k: 452742	n:1470000
KS ci ratio: 9.239469e-01	ci left: 6.736835e-06	ci right 1.851602e-05	k: 17	n:1470000
GPR158   1470000 perm   1086 sec   (1354 perm/sec)   p_kst 1.156463e-05   p_cons 3.079878e-01   p_joint 1.625850e-04

Joint ci ratio: 2.524888e-01	ci left: 1.422948e-04	ci right 1.840268e-04	k: 240	n:1480000
Cons ci ratio: 4.830439e-03	ci left: 3.072029e-01	ci right 3.086911e-01	k: 455761	n:1480000
KS ci ratio: 9.239469e-01	ci left: 6.691315e-06	ci right 1.839091e-05	k: 17	n:1480000
GPR158   1480000 perm   1099 sec   (1347 perm/sec)   p_kst 1.148649e-05   p_cons 3.079466e-01   p_joint 1.621622e-04

Joint ci ratio: 2.519666e-01	ci left: 1.419685e-04	ci right 1.835052e-04	k: 241	n:1490000
Cons ci ratio: 4.814494e-03	ci left: 3.071796e-01	ci right 3.086627e-01	k: 458802	n:1490000
KS ci ratio: 9.239470e-01	ci left: 6.646407e-06	ci right 1.826749e-05	k: 17	n:1490000
GPR158   1490000 perm   1111 sec   (1341 perm/sec)   p_kst 1.140940e-05   p_cons 3.079208e-01   p_joint 1.617450e-04

Joint ci ratio: 2.509318e-01	ci left: 1.422714e-04	ci right 1.836990e-04	k: 243	n:1500000
Cons ci ratio: 4.798420e-03	ci left: 3.071820e-01	ci right 3.086601e-01	k: 461881	n:1500000
KS ci ratio: 9.239470e-01	ci left: 6.602098e-06	ci right 1.814570e-05	k: 17	n:1500000
GPR158   1500000 perm   1124 sec   (1335 perm/sec)   p_kst 1.133333e-05   p_cons 3.079207e-01   p_joint 1.620000e-04

Joint ci ratio: 2.504192e-01	ci left: 1.419499e-04	ci right 1.831862e-04	k: 244	n:1510000
Cons ci ratio: 4.781971e-03	ci left: 3.072319e-01	ci right 3.087052e-01	k: 465032	n:1510000
KS ci ratio: 9.239470e-01	ci left: 6.558375e-06	ci right 1.802553e-05	k: 17	n:1510000
GPR158   1510000 perm   1137 sec   (1329 perm/sec)   p_kst 1.125828e-05   p_cons 3.079682e-01   p_joint 1.615894e-04

Joint ci ratio: 2.717844e-01	ci left: 1.182640e-04	ci right 1.560523e-04	k: 207	n:1520000
Cons ci ratio: 4.765514e-03	ci left: 3.072970e-01	ci right 3.087656e-01	k: 468207	n:1520000
KS ci ratio: 9.239471e-01	ci left: 6.515228e-06	ci right 1.790694e-05	k: 17	n:1520000
GPR158   1520000 perm   1149 sec   (1322 perm/sec)   p_kst 1.118421e-05   p_cons 3.080309e-01   p_joint 1.361842e-04

Joint ci ratio: 2.717845e-01	ci left: 1.174911e-04	ci right 1.550324e-04	k: 207	n:1530000
Cons ci ratio: 4.750289e-03	ci left: 3.072659e-01	ci right 3.087296e-01	k: 471236	n:1530000
KS ci ratio: 9.239471e-01	ci left: 6.472645e-06	ci right 1.778991e-05	k: 17	n:1530000
GPR158   1530000 perm   1162 sec   (1316 perm/sec)   p_kst 1.111111e-05   p_cons 3.079974e-01   p_joint 1.352941e-04

Joint ci ratio: 2.711336e-01	ci left: 1.173333e-04	ci right 1.547191e-04	k: 208	n:1540000
Cons ci ratio: 4.734949e-03	ci left: 3.072586e-01	ci right 3.087175e-01	k: 474301	n:1540000
KS ci ratio: 9.239472e-01	ci left: 6.430614e-06	ci right 1.767439e-05	k: 17	n:1540000
GPR158   1540000 perm   1175 sec   (1310 perm/sec)   p_kst 1.103896e-05   p_cons 3.079877e-01   p_joint 1.350649e-04

Joint ci ratio: 2.692082e-01	ci left: 1.183807e-04	ci right 1.557872e-04	k: 211	n:1550000
Cons ci ratio: 4.719156e-03	ci left: 3.073055e-01	ci right 3.087598e-01	k: 477450	n:1550000
KS ci ratio: 9.239472e-01	ci left: 6.389126e-06	ci right 1.756036e-05	k: 17	n:1550000
GPR158   1550000 perm   1188 sec   (1304 perm/sec)   p_kst 1.096774e-05   p_cons 3.080323e-01   p_joint 1.361290e-04

Joint ci ratio: 2.692083e-01	ci left: 1.176219e-04	ci right 1.547886e-04	k: 211	n:1560000
Cons ci ratio: 4.703740e-03	ci left: 3.073320e-01	ci right 3.087816e-01	k: 480568	n:1560000
KS ci ratio: 9.239472e-01	ci left: 6.348170e-06	ci right 1.744779e-05	k: 17	n:1560000
GPR158   1560000 perm   1202 sec   (1298 perm/sec)   p_kst 1.089744e-05   p_cons 3.080564e-01   p_joint 1.352564e-04

Joint ci ratio: 2.673234e-01	ci left: 1.186550e-04	ci right 1.558417e-04	k: 214	n:1570000
Cons ci ratio: 4.689069e-03	ci left: 3.073040e-01	ci right 3.087490e-01	k: 483601	n:1570000
KS ci ratio: 9.239473e-01	ci left: 6.307736e-06	ci right 1.733666e-05	k: 17	n:1570000
GPR158   1570000 perm   1215 sec   (1293 perm/sec)   p_kst 1.082803e-05   p_cons 3.080261e-01   p_joint 1.363057e-04

Joint ci ratio: 2.667039e-01	ci left: 1.184946e-04	ci right 1.555305e-04	k: 215	n:1580000
Cons ci ratio: 4.674431e-03	ci left: 3.072859e-01	ci right 3.087262e-01	k: 486649	n:1580000
KS ci ratio: 9.239473e-01	ci left: 6.267814e-06	ci right 1.722694e-05	k: 17	n:1580000
GPR158   1580000 perm   1228 sec   (1287 perm/sec)   p_kst 1.075949e-05   p_cons 3.080057e-01   p_joint 1.360759e-04

Joint ci ratio: 2.667040e-01	ci left: 1.177493e-04	ci right 1.545524e-04	k: 215	n:1590000
Cons ci ratio: 4.659502e-03	ci left: 3.073070e-01	ci right 3.087428e-01	k: 489759	n:1590000
KS ci ratio: 9.239473e-01	ci left: 6.228393e-06	ci right 1.711859e-05	k: 17	n:1590000
GPR158   1590000 perm   1242 sec   (1281 perm/sec)   p_kst 1.069182e-05   p_cons 3.080245e-01   p_joint 1.352201e-04

Joint ci ratio: 2.642681e-01	ci left: 1.193470e-04	ci right 1.562524e-04	k: 219	n:1600000
Cons ci ratio: 4.644696e-03	ci left: 3.073297e-01	ci right 3.087610e-01	k: 492872	n:1600000
KS ci ratio: 8.993041e-01	ci left: 6.667476e-06	ci right 1.777979e-05	k: 18	n:1600000
GPR158   1600000 perm   1255 sec   (1275 perm/sec)   p_kst 1.125000e-05   p_cons 3.080450e-01   p_joint 1.368750e-04

Joint ci ratio: 2.624844e-01	ci left: 1.203461e-04	ci right 1.572679e-04	k: 222	n:1610000
Cons ci ratio: 4.630481e-03	ci left: 3.073105e-01	ci right 3.087374e-01	k: 495918	n:1610000
KS ci ratio: 8.993041e-01	ci left: 6.626063e-06	ci right 1.766936e-05	k: 18	n:1610000
GPR158   1610000 perm   1269 sec   (1269 perm/sec)   p_kst 1.118012e-05   p_cons 3.080236e-01   p_joint 1.378882e-04

Joint ci ratio: 2.607363e-01	ci left: 1.213336e-04	ci right 1.582702e-04	k: 225	n:1620000
Cons ci ratio: 4.616122e-03	ci left: 3.073169e-01	ci right 3.087394e-01	k: 499005	n:1620000
KS ci ratio: 8.993041e-01	ci left: 6.585162e-06	ci right 1.756029e-05	k: 18	n:1620000
GPR158   1620000 perm   1282 sec   (1263 perm/sec)   p_kst 1.111111e-05   p_cons 3.080278e-01   p_joint 1.388889e-04

Joint ci ratio: 2.595901e-01	ci left: 1.217363e-04	ci right 1.586060e-04	k: 227	n:1630000
Cons ci ratio: 4.602207e-03	ci left: 3.072944e-01	ci right 3.087124e-01	k: 502045	n:1630000
KS ci ratio: 8.554084e-01	ci left: 7.494813e-06	ci right 1.894986e-05	k: 20	n:1630000
GPR158   1630000 perm   1296 sec   (1258 perm/sec)   p_kst 1.226994e-05   p_cons 3.080031e-01   p_joint 1.392638e-04

Joint ci ratio: 2.595902e-01	ci left: 1.209940e-04	ci right 1.576389e-04	k: 227	n:1640000
Cons ci ratio: 4.588313e-03	ci left: 3.072819e-01	ci right 3.086956e-01	k: 505101	n:1640000
KS ci ratio: 8.554084e-01	ci left: 7.449113e-06	ci right 1.883431e-05	k: 20	n:1640000
GPR158   1640000 perm   1310 sec   (1252 perm/sec)   p_kst 1.219512e-05   p_cons 3.079884e-01   p_joint 1.384146e-04

Joint ci ratio: 2.595903e-01	ci left: 1.202607e-04	ci right 1.566835e-04	k: 227	n:1650000
Cons ci ratio: 4.574504e-03	ci left: 3.072732e-01	ci right 3.086826e-01	k: 508163	n:1650000
KS ci ratio: 8.554084e-01	ci left: 7.403966e-06	ci right 1.872017e-05	k: 20	n:1650000
GPR158   1650000 perm   1323 sec   (1247 perm/sec)   p_kst 1.212121e-05   p_cons 3.079776e-01   p_joint 1.375758e-04

Joint ci ratio: 2.595904e-01	ci left: 1.195362e-04	ci right 1.557397e-04	k: 227	n:1660000
Cons ci ratio: 4.561045e-03	ci left: 3.072436e-01	ci right 3.086487e-01	k: 511190	n:1660000
KS ci ratio: 8.554085e-01	ci left: 7.359364e-06	ci right 1.860740e-05	k: 20	n:1660000
GPR158   1660000 perm   1337 sec   (1241 perm/sec)   p_kst 1.204819e-05   p_cons 3.079458e-01   p_joint 1.367470e-04

Joint ci ratio: 2.590231e-01	ci left: 1.193803e-04	ci right 1.554447e-04	k: 228	n:1670000
Cons ci ratio: 4.547550e-03	ci left: 3.072286e-01	ci right 3.086295e-01	k: 514241	n:1670000
KS ci ratio: 8.554085e-01	ci left: 7.315296e-06	ci right 1.849597e-05	k: 20	n:1670000
GPR158   1670000 perm   1351 sec   (1236 perm/sec)   p_kst 1.197605e-05   p_cons 3.079287e-01   p_joint 1.365269e-04

Joint ci ratio: 2.578993e-01	ci left: 1.197830e-04	ci right 1.557869e-04	k: 230	n:1680000
Cons ci ratio: 4.533744e-03	ci left: 3.072543e-01	ci right 3.086511e-01	k: 517360	n:1680000
KS ci ratio: 8.357411e-01	ci left: 7.737713e-06	ci right 1.910751e-05	k: 21	n:1680000
GPR158   1680000 perm   1365 sec   (1231 perm/sec)   p_kst 1.250000e-05   p_cons 3.079524e-01   p_joint 1.369048e-04

Joint ci ratio: 2.567900e-01	ci left: 1.201814e-04	ci right 1.561247e-04	k: 232	n:1690000
Cons ci ratio: 4.520327e-03	ci left: 3.072549e-01	ci right 3.086475e-01	k: 520437	n:1690000
KS ci ratio: 8.357411e-01	ci left: 7.691928e-06	ci right 1.899445e-05	k: 21	n:1690000
GPR158   1690000 perm   1379 sec   (1225 perm/sec)   p_kst 1.242604e-05   p_cons 3.079509e-01   p_joint 1.372781e-04

Joint ci ratio: 2.556949e-01	ci left: 1.205754e-04	ci right 1.564581e-04	k: 234	n:1700000
Cons ci ratio: 4.507003e-03	ci left: 3.072578e-01	ci right 3.086463e-01	k: 523518	n:1700000
KS ci ratio: 8.357412e-01	ci left: 7.646681e-06	ci right 1.888272e-05	k: 21	n:1700000
GPR158   1700000 perm   1393 sec   (1220 perm/sec)   p_kst 1.235294e-05   p_cons 3.079518e-01   p_joint 1.376471e-04

Joint ci ratio: 2.540781e-01	ci left: 1.215126e-04	ci right 1.574094e-04	k: 237	n:1710000
Cons ci ratio: 4.493623e-03	ci left: 3.072771e-01	ci right 3.086616e-01	k: 526627	n:1710000
KS ci ratio: 8.357412e-01	ci left: 7.601964e-06	ci right 1.877230e-05	k: 21	n:1710000
GPR158   1710000 perm   1408 sec   (1215 perm/sec)   p_kst 1.228070e-05   p_cons 3.079690e-01   p_joint 1.385965e-04

Joint ci ratio: 2.535460e-01	ci left: 1.213505e-04	ci right 1.571125e-04	k: 238	n:1720000
Cons ci ratio: 4.480576e-03	ci left: 3.072758e-01	ci right 3.086562e-01	k: 529701	n:1720000
KS ci ratio: 8.357412e-01	ci left: 7.557766e-06	ci right 1.866316e-05	k: 21	n:1720000
GPR158   1720000 perm   1422 sec   (1210 perm/sec)   p_kst 1.220930e-05   p_cons 3.079657e-01   p_joint 1.383721e-04

Joint ci ratio: 2.530173e-01	ci left: 1.211904e-04	ci right 1.568190e-04	k: 239	n:1730000
Cons ci ratio: 4.467024e-03	ci left: 3.073335e-01	ci right 3.087100e-01	k: 532877	n:1730000
KS ci ratio: 8.173708e-01	ci left: 7.969544e-06	ci right 1.925327e-05	k: 22	n:1730000
GPR158   1730000 perm   1436 sec   (1205 perm/sec)   p_kst 1.271676e-05   p_cons 3.080214e-01   p_joint 1.381503e-04

Joint ci ratio: 2.514505e-01	ci left: 1.221091e-04	ci right 1.577506e-04	k: 242	n:1740000
Cons ci ratio: 4.453961e-03	ci left: 3.073554e-01	ci right 3.087280e-01	k: 535992	n:1740000
KS ci ratio: 8.001609e-01	ci left: 8.379344e-06	ci right 1.983401e-05	k: 23	n:1740000
GPR158   1740000 perm   1451 sec   (1200 perm/sec)   p_kst 1.321839e-05   p_cons 3.080414e-01   p_joint 1.390805e-04

Joint ci ratio: 2.509347e-01	ci left: 1.219468e-04	ci right 1.574565e-04	k: 243	n:1750000
Cons ci ratio: 4.441434e-03	ci left: 3.073366e-01	ci right 3.087052e-01	k: 539036	n:1750000
KS ci ratio: 8.001609e-01	ci left: 8.331462e-06	ci right 1.972067e-05	k: 23	n:1750000
GPR158   1750000 perm   1465 sec   (1195 perm/sec)   p_kst 1.314286e-05   p_cons 3.080206e-01   p_joint 1.388571e-04

Joint ci ratio: 2.504221e-01	ci left: 1.217864e-04	ci right 1.571657e-04	k: 244	n:1760000
Cons ci ratio: 4.429224e-03	ci left: 3.072975e-01	ci right 3.086622e-01	k: 542044	n:1760000
KS ci ratio: 8.001610e-01	ci left: 8.284124e-06	ci right 1.960863e-05	k: 23	n:1760000
GPR158   1760000 perm   1479 sec   (1190 perm/sec)   p_kst 1.306818e-05   p_cons 3.079795e-01   p_joint 1.386364e-04

Joint ci ratio: 2.489027e-01	ci left: 1.226872e-04	ci right 1.580785e-04	k: 247	n:1770000
Cons ci ratio: 4.417279e-03	ci left: 3.072431e-01	ci right 3.086038e-01	k: 545024	n:1770000
KS ci ratio: 8.001610e-01	ci left: 8.237321e-06	ci right 1.949784e-05	k: 23	n:1770000
GPR158   1770000 perm   1494 sec   (1185 perm/sec)   p_kst 1.299435e-05   p_cons 3.079232e-01   p_joint 1.395480e-04

Joint ci ratio: 2.469192e-01	ci left: 1.241055e-04	ci right 1.595769e-04	k: 251	n:1780000
Cons ci ratio: 4.404756e-03	ci left: 3.072544e-01	ci right 3.086113e-01	k: 548120	n:1780000
KS ci ratio: 7.839943e-01	ci left: 8.638925e-06	ci right 2.006179e-05	k: 24	n:1780000
GPR158   1780000 perm   1509 sec   (1180 perm/sec)   p_kst 1.348315e-05   p_cons 3.079326e-01   p_joint 1.410112e-04

Joint ci ratio: 2.469193e-01	ci left: 1.234122e-04	ci right 1.586854e-04	k: 251	n:1790000
Cons ci ratio: 4.393065e-03	ci left: 3.071953e-01	ci right 3.085483e-01	k: 551090	n:1790000
KS ci ratio: 7.839943e-01	ci left: 8.590662e-06	ci right 1.994971e-05	k: 24	n:1790000
GPR158   1790000 perm   1523 sec   (1175 perm/sec)   p_kst 1.340782e-05   p_cons 3.078715e-01   p_joint 1.402235e-04

Joint ci ratio: 2.464309e-01	ci left: 1.232478e-04	ci right 1.583937e-04	k: 252	n:1800000
Cons ci ratio: 4.380592e-03	ci left: 3.072218e-01	ci right 3.085711e-01	k: 554213	n:1800000
KS ci ratio: 7.839943e-01	ci left: 8.542936e-06	ci right 1.983888e-05	k: 24	n:1800000
GPR158   1800000 perm   1538 sec   (1170 perm/sec)   p_kst 1.333333e-05   p_cons 3.078961e-01   p_joint 1.400000e-04

Joint ci ratio: 2.459453e-01	ci left: 1.230853e-04	ci right 1.581051e-04	k: 253	n:1810000
Cons ci ratio: 4.368191e-03	ci left: 3.072513e-01	ci right 3.085969e-01	k: 557342	n:1810000
KS ci ratio: 7.839944e-01	ci left: 8.495738e-06	ci right 1.972927e-05	k: 24	n:1810000
GPR158   1810000 perm   1553 sec   (1166 perm/sec)   p_kst 1.325967e-05   p_cons 3.079238e-01   p_joint 1.397790e-04

Joint ci ratio: 2.454627e-01	ci left: 1.229246e-04	ci right 1.578196e-04	k: 254	n:1820000
Cons ci ratio: 4.356326e-03	ci left: 3.072382e-01	ci right 3.085800e-01	k: 560394	n:1820000
KS ci ratio: 7.839944e-01	ci left: 8.449058e-06	ci right 1.962087e-05	k: 24	n:1820000
GPR158   1820000 perm   1568 sec   (1161 perm/sec)   p_kst 1.318681e-05   p_cons 3.079088e-01   p_joint 1.395604e-04

Joint ci ratio: 2.445056e-01	ci left: 1.232787e-04	ci right 1.581170e-04	k: 256	n:1830000
Cons ci ratio: 4.344436e-03	ci left: 3.072372e-01	ci right 3.085754e-01	k: 563468	n:1830000
KS ci ratio: 7.687696e-01	ci left: 8.840829e-06	ci right 2.016656e-05	k: 25	n:1830000
GPR158   1830000 perm   1583 sec   (1156 perm/sec)   p_kst 1.366120e-05   p_cons 3.079060e-01   p_joint 1.398907e-04

Joint ci ratio: 2.445057e-01	ci left: 1.226087e-04	ci right 1.572577e-04	k: 256	n:1840000
Cons ci ratio: 4.332582e-03	ci left: 3.072423e-01	ci right 3.085768e-01	k: 566553	n:1840000
KS ci ratio: 7.687696e-01	ci left: 8.792781e-06	ci right 2.005696e-05	k: 25	n:1840000
GPR158   1840000 perm   1598 sec   (1151 perm/sec)   p_kst 1.358696e-05   p_cons 3.079092e-01   p_joint 1.391304e-04

Joint ci ratio: 2.440315e-01	ci left: 1.224534e-04	ci right 1.569812e-04	k: 257	n:1850000
Cons ci ratio: 4.320900e-03	ci left: 3.072397e-01	ci right 3.085706e-01	k: 569624	n:1850000
KS ci ratio: 7.543986e-01	ci left: 9.180595e-06	ci right 2.059238e-05	k: 26	n:1850000
GPR158   1850000 perm   1613 sec   (1147 perm/sec)   p_kst 1.405405e-05   p_cons 3.079049e-01   p_joint 1.389189e-04

Joint ci ratio: 2.435599e-01	ci left: 1.222998e-04	ci right 1.567076e-04	k: 258	n:1860000
Cons ci ratio: 4.309248e-03	ci left: 3.072436e-01	ci right 3.085710e-01	k: 572707	n:1860000
KS ci ratio: 7.543987e-01	ci left: 9.131236e-06	ci right 2.048167e-05	k: 26	n:1860000
GPR158   1860000 perm   1629 sec   (1142 perm/sec)   p_kst 1.397849e-05   p_cons 3.079070e-01   p_joint 1.387097e-04

Joint ci ratio: 2.430911e-01	ci left: 1.221480e-04	ci right 1.564369e-04	k: 259	n:1870000
Cons ci ratio: 4.297641e-03	ci left: 3.072523e-01	ci right 3.085761e-01	k: 575799	n:1870000
KS ci ratio: 7.543987e-01	ci left: 9.082406e-06	ci right 2.037214e-05	k: 26	n:1870000
GPR158   1870000 perm   1644 sec   (1138 perm/sec)   p_kst 1.390374e-05   p_cons 3.079139e-01   p_joint 1.385027e-04

Joint ci ratio: 2.421615e-01	ci left: 1.224974e-04	ci right 1.567332e-04	k: 261	n:1880000
Cons ci ratio: 4.286100e-03	ci left: 3.072636e-01	ci right 3.085838e-01	k: 578896	n:1880000
KS ci ratio: 7.543987e-01	ci left: 9.034095e-06	ci right 2.026378e-05	k: 26	n:1880000
GPR158   1880000 perm   1659 sec   (1133 perm/sec)   p_kst 1.382979e-05   p_cons 3.079234e-01   p_joint 1.388298e-04

Joint ci ratio: 2.417007e-01	ci left: 1.223463e-04	ci right 1.564650e-04	k: 262	n:1890000
Cons ci ratio: 4.274365e-03	ci left: 3.073032e-01	ci right 3.086201e-01	k: 582047	n:1890000
KS ci ratio: 7.543988e-01	ci left: 8.986296e-06	ci right 2.015656e-05	k: 26	n:1890000
GPR158   1890000 perm   1675 sec   (1129 perm/sec)   p_kst 1.375661e-05   p_cons 3.079614e-01   p_joint 1.386243e-04

Joint ci ratio: 2.449834e-01	ci left: 1.182428e-04	ci right 1.517332e-04	k: 255	n:1900000
Cons ci ratio: 4.263137e-03	ci left: 3.073015e-01	ci right 3.086149e-01	k: 585120	n:1900000
KS ci ratio: 7.543988e-01	ci left: 8.938999e-06	ci right 2.005048e-05	k: 26	n:1900000
GPR158   1900000 perm   1690 sec   (1124 perm/sec)   p_kst 1.368421e-05   p_cons 3.079579e-01   p_joint 1.342105e-04

Joint ci ratio: 2.445064e-01	ci left: 1.181152e-04	ci right 1.514944e-04	k: 256	n:1910000
Cons ci ratio: 4.251731e-03	ci left: 3.073265e-01	ci right 3.086364e-01	k: 588244	n:1910000
KS ci ratio: 7.543988e-01	ci left: 8.892198e-06	ci right 1.994550e-05	k: 26	n:1910000
GPR158   1910000 perm   1706 sec   (1120 perm/sec)   p_kst 1.361257e-05   p_cons 3.079812e-01   p_joint 1.340314e-04

Joint ci ratio: 2.445065e-01	ci left: 1.175000e-04	ci right 1.507053e-04	k: 256	n:1920000
Cons ci ratio: 4.240772e-03	ci left: 3.073153e-01	ci right 3.086218e-01	k: 591299	n:1920000
KS ci ratio: 7.543989e-01	ci left: 8.845885e-06	ci right 1.984162e-05	k: 26	n:1920000
GPR158   1920000 perm   1722 sec   (1115 perm/sec)   p_kst 1.354167e-05   p_cons 3.079682e-01   p_joint 1.333333e-04

Joint ci ratio: 2.426254e-01	ci left: 1.188372e-04	ci right 1.521233e-04	k: 260	n:1930000
Cons ci ratio: 4.229554e-03	ci left: 3.073389e-01	ci right 3.086420e-01	k: 594421	n:1930000
KS ci ratio: 7.543989e-01	ci left: 8.800051e-06	ci right 1.973881e-05	k: 26	n:1930000
GPR158   1930000 perm   1738 sec   (1111 perm/sec)   p_kst 1.347150e-05   p_cons 3.079902e-01   p_joint 1.347150e-04

Joint ci ratio: 2.426255e-01	ci left: 1.182247e-04	ci right 1.513391e-04	k: 260	n:1940000
Cons ci ratio: 4.218623e-03	ci left: 3.073421e-01	ci right 3.086419e-01	k: 597504	n:1940000
KS ci ratio: 7.543989e-01	ci left: 8.754690e-06	ci right 1.963706e-05	k: 26	n:1940000
GPR158   1940000 perm   1754 sec   (1106 perm/sec)   p_kst 1.340206e-05   p_cons 3.079918e-01   p_joint 1.340206e-04

Joint ci ratio: 2.407873e-01	ci left: 1.195454e-04	ci right 1.527383e-04	k: 264	n:1950000
Cons ci ratio: 4.207984e-03	ci left: 3.073244e-01	ci right 3.086208e-01	k: 600546	n:1950000
KS ci ratio: 7.408049e-01	ci left: 9.124722e-06	ci right 2.014536e-05	k: 27	n:1950000
GPR158   1950000 perm   1769 sec   (1102 perm/sec)   p_kst 1.384615e-05   p_cons 3.079723e-01   p_joint 1.353846e-04

Joint ci ratio: 2.394357e-01	ci left: 1.203741e-04	ci right 1.535815e-04	k: 267	n:1960000
Cons ci ratio: 4.197144e-03	ci left: 3.073354e-01	ci right 3.086285e-01	k: 603644	n:1960000
KS ci ratio: 7.279202e-01	ci left: 9.492774e-06	ci right 2.064677e-05	k: 28	n:1960000
GPR158   1960000 perm   1785 sec   (1098 perm/sec)   p_kst 1.428571e-05   p_cons 3.079816e-01   p_joint 1.362245e-04

Joint ci ratio: 2.394358e-01	ci left: 1.197630e-04	ci right 1.528019e-04	k: 267	n:1970000
Cons ci ratio: 4.186288e-03	ci left: 3.073564e-01	ci right 3.086462e-01	k: 606762	n:1970000
KS ci ratio: 7.279202e-01	ci left: 9.444587e-06	ci right 2.054196e-05	k: 28	n:1970000
GPR158   1970000 perm   1801 sec   (1094 perm/sec)   p_kst 1.421320e-05   p_cons 3.080010e-01   p_joint 1.355330e-04

Joint ci ratio: 2.394358e-01	ci left: 1.191581e-04	ci right 1.520302e-04	k: 267	n:1980000
Cons ci ratio: 4.175327e-03	ci left: 3.073964e-01	ci right 3.086830e-01	k: 609918	n:1980000
KS ci ratio: 7.279202e-01	ci left: 9.396887e-06	ci right 2.043822e-05	k: 28	n:1980000
GPR158   1980000 perm   1817 sec   (1090 perm/sec)   p_kst 1.414141e-05   p_cons 3.080394e-01   p_joint 1.348485e-04

Joint ci ratio: 2.385474e-01	ci left: 1.195042e-04	ci right 1.523313e-04	k: 269	n:1990000
Cons ci ratio: 4.164776e-03	ci left: 3.074028e-01	ci right 3.086862e-01	k: 613008	n:1990000
KS ci ratio: 7.279202e-01	ci left: 9.349666e-06	ci right 2.033551e-05	k: 28	n:1990000
GPR158   1990000 perm   1833 sec   (1086 perm/sec)   p_kst 1.407035e-05   p_cons 3.080442e-01   p_joint 1.351759e-04

Joint ci ratio: 2.385474e-01	ci left: 1.189067e-04	ci right 1.515697e-04	k: 269	n:2000000
Cons ci ratio: 4.154314e-03	ci left: 3.074082e-01	ci right 3.086884e-01	k: 616096	n:2000000
KS ci ratio: 7.279203e-01	ci left: 9.302918e-06	ci right 2.023383e-05	k: 28	n:2000000
GPR158   2000000 perm   1849 sec   (1082 perm/sec)   p_kst 1.400000e-05   p_cons 3.080480e-01   p_joint 1.345000e-04

Joint ci ratio: 2.381069e-01	ci left: 1.187829e-04	ci right 1.513428e-04	k: 270	n:2010000
Cons ci ratio: 4.144028e-03	ci left: 3.074036e-01	ci right 3.086806e-01	k: 619164	n:2010000
KS ci ratio: 7.279203e-01	ci left: 9.256635e-06	ci right 2.013317e-05	k: 28	n:2010000
GPR158   2010000 perm   1865 sec   (1078 perm/sec)   p_kst 1.393035e-05   p_cons 3.080418e-01   p_joint 1.343284e-04

Joint ci ratio: 2.381070e-01	ci left: 1.181949e-04	ci right 1.505935e-04	k: 270	n:2020000
Cons ci ratio: 4.133975e-03	ci left: 3.073827e-01	ci right 3.086565e-01	k: 622199	n:2020000
KS ci ratio: 7.279203e-01	ci left: 9.210810e-06	ci right 2.003350e-05	k: 28	n:2020000
GPR158   2020000 perm   1882 sec   (1074 perm/sec)   p_kst 1.386139e-05   p_cons 3.080193e-01   p_joint 1.336634e-04

Joint ci ratio: 2.367998e-01	ci left: 1.190026e-04	ci right 1.514173e-04	k: 273	n:2030000
Cons ci ratio: 4.123591e-03	ci left: 3.074038e-01	ci right 3.086745e-01	k: 625319	n:2030000
KS ci ratio: 7.156853e-01	ci left: 9.567387e-06	ci right 2.051660e-05	k: 29	n:2030000
GPR158   2030000 perm   1898 sec   (1069 perm/sec)   p_kst 1.428571e-05   p_cons 3.080389e-01   p_joint 1.344828e-04

Joint ci ratio: 2.363689e-01	ci left: 1.188804e-04	ci right 1.511942e-04	k: 274	n:2040000
Cons ci ratio: 4.113478e-03	ci left: 3.074047e-01	ci right 3.086723e-01	k: 628398	n:2040000
KS ci ratio: 7.156854e-01	ci left: 9.520488e-06	ci right 2.041603e-05	k: 29	n:2040000
GPR158   2040000 perm   1915 sec   (1065 perm/sec)   p_kst 1.421569e-05   p_cons 3.080382e-01   p_joint 1.343137e-04

Joint ci ratio: 2.355140e-01	ci left: 1.192184e-04	ci right 1.514899e-04	k: 276	n:2050000
Cons ci ratio: 4.102773e-03	ci left: 3.074748e-01	ci right 3.087394e-01	k: 631619	n:2050000
KS ci ratio: 7.156854e-01	ci left: 9.474047e-06	ci right 2.031644e-05	k: 29	n:2050000
GPR158   2050000 perm   1931 sec   (1062 perm/sec)   p_kst 1.414634e-05   p_cons 3.081068e-01   p_joint 1.346341e-04

Joint ci ratio: 2.355141e-01	ci left: 1.186397e-04	ci right 1.507545e-04	k: 276	n:2060000
Cons ci ratio: 4.092854e-03	ci left: 3.074710e-01	ci right 3.087325e-01	k: 634689	n:2060000
KS ci ratio: 7.156854e-01	ci left: 9.428056e-06	ci right 2.021782e-05	k: 29	n:2060000
GPR158   2060000 perm   1948 sec   (1058 perm/sec)   p_kst 1.407767e-05   p_cons 3.081015e-01   p_joint 1.339806e-04

Joint ci ratio: 2.338317e-01	ci left: 1.198853e-04	ci right 1.520720e-04	k: 280	n:2070000
Cons ci ratio: 4.082841e-03	ci left: 3.074846e-01	ci right 3.087430e-01	k: 637795	n:2070000
KS ci ratio: 7.040473e-01	ci left: 9.778221e-06	ci right 2.068924e-05	k: 30	n:2070000
GPR158   2070000 perm   1964 sec   (1054 perm/sec)   p_kst 1.449275e-05   p_cons 3.081135e-01   p_joint 1.352657e-04

Joint ci ratio: 2.338317e-01	ci left: 1.193089e-04	ci right 1.513409e-04	k: 280	n:2080000
Cons ci ratio: 4.072960e-03	ci left: 3.074918e-01	ci right 3.087472e-01	k: 640888	n:2080000
KS ci ratio: 7.040474e-01	ci left: 9.731210e-06	ci right 2.058978e-05	k: 30	n:2080000
GPR158   2080000 perm   1981 sec   (1050 perm/sec)   p_kst 1.442308e-05   p_cons 3.081192e-01   p_joint 1.346154e-04

Joint ci ratio: 2.334168e-01	ci left: 1.191885e-04	ci right 1.511232e-04	k: 281	n:2090000
Cons ci ratio: 4.063324e-03	ci left: 3.074808e-01	ci right 3.087332e-01	k: 643943	n:2090000
KS ci ratio: 7.040474e-01	ci left: 9.684649e-06	ci right 2.049126e-05	k: 30	n:2090000
GPR158   2090000 perm   1997 sec   (1046 perm/sec)   p_kst 1.435407e-05   p_cons 3.081067e-01   p_joint 1.344498e-04

Joint ci ratio: 2.325934e-01	ci left: 1.195178e-04	ci right 1.514114e-04	k: 283	n:2100000
Cons ci ratio: 4.053470e-03	ci left: 3.074998e-01	ci right 3.087493e-01	k: 647061	n:2100000
KS ci ratio: 7.040474e-01	ci left: 9.638532e-06	ci right 2.039368e-05	k: 30	n:2100000
GPR158   2100000 perm   2014 sec   (1043 perm/sec)   p_kst 1.428571e-05   p_cons 3.081243e-01   p_joint 1.347619e-04

Joint ci ratio: 2.313745e-01	ci left: 1.202905e-04	ci right 1.521981e-04	k: 286	n:2110000
Cons ci ratio: 4.043949e-03	ci left: 3.074913e-01	ci right 3.087377e-01	k: 650121	n:2110000
KS ci ratio: 7.040474e-01	ci left: 9.592851e-06	ci right 2.029703e-05	k: 30	n:2110000
GPR158   2110000 perm   2031 sec   (1039 perm/sec)   p_kst 1.421801e-05   p_cons 3.081142e-01   p_joint 1.355450e-04

Joint ci ratio: 2.309725e-01	ci left: 1.201675e-04	ci right 1.519792e-04	k: 287	n:2120000
Cons ci ratio: 4.034285e-03	ci left: 3.075049e-01	ci right 3.087484e-01	k: 653228	n:2120000
KS ci ratio: 7.040475e-01	ci left: 9.547602e-06	ci right 2.020129e-05	k: 30	n:2120000
GPR158   2120000 perm   2048 sec   (1035 perm/sec)   p_kst 1.415094e-05   p_cons 3.081264e-01   p_joint 1.353774e-04

Joint ci ratio: 2.309725e-01	ci left: 1.196033e-04	ci right 1.512656e-04	k: 287	n:2130000
Cons ci ratio: 4.024627e-03	ci left: 3.075250e-01	ci right 3.087656e-01	k: 656349	n:2130000
KS ci ratio: 7.040475e-01	ci left: 9.502777e-06	ci right 2.010645e-05	k: 30	n:2130000
GPR158   2130000 perm   2065 sec   (1031 perm/sec)   p_kst 1.408451e-05   p_cons 3.081451e-01   p_joint 1.347418e-04

Joint ci ratio: 2.293849e-01	ci left: 1.208058e-04	ci right 1.525355e-04	k: 291	n:2140000
Cons ci ratio: 4.015184e-03	ci left: 3.075295e-01	ci right 3.087672e-01	k: 659437	n:2140000
KS ci ratio: 7.040475e-01	ci left: 9.458372e-06	ci right 2.001249e-05	k: 30	n:2140000
GPR158   2140000 perm   2082 sec   (1028 perm/sec)   p_kst 1.401869e-05   p_cons 3.081481e-01   p_joint 1.359813e-04

Joint ci ratio: 2.286034e-01	ci left: 1.211208e-04	ci right 1.528096e-04	k: 293	n:2150000
Cons ci ratio: 4.005633e-03	ci left: 3.075526e-01	ci right 3.087875e-01	k: 662565	n:2150000
KS ci ratio: 7.040475e-01	ci left: 9.414379e-06	ci right 1.991941e-05	k: 30	n:2150000
GPR158   2150000 perm   2100 sec   (1024 perm/sec)   p_kst 1.395349e-05   p_cons 3.081698e-01   p_joint 1.362791e-04

Joint ci ratio: 2.282156e-01	ci left: 1.209965e-04	ci right 1.525915e-04	k: 294	n:2160000
Cons ci ratio: 3.995949e-03	ci left: 3.075967e-01	ci right 3.088288e-01	k: 665739	n:2160000
KS ci ratio: 6.929594e-01	ci left: 9.751407e-06	ci right 2.037125e-05	k: 31	n:2160000
GPR158   2160000 perm   2117 sec   (1020 perm/sec)   p_kst 1.435185e-05   p_cons 3.082125e-01   p_joint 1.361111e-04

Joint ci ratio: 2.278298e-01	ci left: 1.208734e-04	ci right 1.523754e-04	k: 295	n:2170000
Cons ci ratio: 3.986538e-03	ci left: 3.076188e-01	ci right 3.088480e-01	k: 668866	n:2170000
KS ci ratio: 6.929594e-01	ci left: 9.706470e-06	ci right 2.027737e-05	k: 31	n:2170000
GPR158   2170000 perm   2135 sec   (1017 perm/sec)   p_kst 1.428571e-05   p_cons 3.082332e-01   p_joint 1.359447e-04

Joint ci ratio: 2.266839e-01	ci left: 1.216168e-04	ci right 1.531308e-04	k: 298	n:2180000
Cons ci ratio: 3.977334e-03	ci left: 3.076256e-01	ci right 3.088520e-01	k: 671960	n:2180000
KS ci ratio: 6.929594e-01	ci left: 9.661945e-06	ci right 2.018436e-05	k: 31	n:2180000
GPR158   2180000 perm   2152 sec   (1013 perm/sec)   p_kst 1.422018e-05   p_cons 3.082385e-01   p_joint 1.366972e-04

Joint ci ratio: 2.259295e-01	ci left: 1.219229e-04	ci right 1.533965e-04	k: 300	n:2190000
Cons ci ratio: 3.967956e-03	ci left: 3.076578e-01	ci right 3.088815e-01	k: 675110	n:2190000
KS ci ratio: 6.823791e-01	ci left: 9.994531e-06	ci right 2.062754e-05	k: 32	n:2190000
GPR158   2190000 perm   2170 sec   (1009 perm/sec)   p_kst 1.461187e-05   p_cons 3.082694e-01   p_joint 1.369863e-04

Joint ci ratio: 2.255551e-01	ci left: 1.217976e-04	ci right 1.531795e-04	k: 301	n:2200000
Cons ci ratio: 3.958724e-03	ci left: 3.076812e-01	ci right 3.089021e-01	k: 678241	n:2200000
KS ci ratio: 6.823791e-01	ci left: 9.949101e-06	ci right 2.053378e-05	k: 32	n:2200000
GPR158   2200000 perm   2187 sec   (1006 perm/sec)   p_kst 1.454545e-05   p_cons 3.082914e-01   p_joint 1.368182e-04

Joint ci ratio: 2.248119e-01	ci left: 1.221004e-04	ci right 1.534423e-04	k: 303	n:2210000
Cons ci ratio: 3.949673e-03	ci left: 3.076916e-01	ci right 3.089098e-01	k: 681344	n:2210000
KS ci ratio: 6.823792e-01	ci left: 9.904082e-06	ci right 2.044087e-05	k: 32	n:2210000
GPR158   2210000 perm   2205 sec   (1002 perm/sec)   p_kst 1.447964e-05   p_cons 3.083005e-01   p_joint 1.371041e-04

Joint ci ratio: 2.248120e-01	ci left: 1.215504e-04	ci right 1.527511e-04	k: 303	n:2220000
Cons ci ratio: 3.940359e-03	ci left: 3.077371e-01	ci right 3.089526e-01	k: 684525	n:2220000
KS ci ratio: 6.823792e-01	ci left: 9.859469e-06	ci right 2.034879e-05	k: 32	n:2220000
GPR158   2220000 perm   2223 sec   (998 perm/sec)   p_kst 1.441441e-05   p_cons 3.083446e-01   p_joint 1.364865e-04

Joint ci ratio: 2.244431e-01	ci left: 1.214285e-04	ci right 1.525397e-04	k: 304	n:2230000
Cons ci ratio: 3.931413e-03	ci left: 3.077495e-01	ci right 3.089622e-01	k: 687633	n:2230000
KS ci ratio: 6.823792e-01	ci left: 9.815256e-06	ci right 2.025754e-05	k: 32	n:2230000
GPR158   2230000 perm   2241 sec   (995 perm/sec)   p_kst 1.434978e-05   p_cons 3.083556e-01   p_joint 1.363229e-04

Joint ci ratio: 2.237108e-01	ci left: 1.217292e-04	ci right 1.528016e-04	k: 306	n:2240000
Cons ci ratio: 3.922437e-03	ci left: 3.077716e-01	ci right 3.089816e-01	k: 690763	n:2240000
KS ci ratio: 6.823792e-01	ci left: 9.771438e-06	ci right 2.016711e-05	k: 32	n:2240000
GPR158   2240000 perm   2259 sec   (992 perm/sec)   p_kst 1.428571e-05   p_cons 3.083763e-01   p_joint 1.366071e-04

Joint ci ratio: 2.233474e-01	ci left: 1.216077e-04	ci right 1.525918e-04	k: 307	n:2250000
Cons ci ratio: 3.913416e-03	ci left: 3.078050e-01	ci right 3.090124e-01	k: 693919	n:2250000
KS ci ratio: 6.823793e-01	ci left: 9.728009e-06	ci right 2.007748e-05	k: 32	n:2250000
GPR158   2250000 perm   2277 sec   (988 perm/sec)   p_kst 1.422222e-05   p_cons 3.084084e-01   p_joint 1.364444e-04

Joint ci ratio: 2.226257e-01	ci left: 1.219052e-04	ci right 1.528509e-04	k: 309	n:2260000
Cons ci ratio: 3.904498e-03	ci left: 3.078337e-01	ci right 3.090384e-01	k: 697065	n:2260000
KS ci ratio: 6.823793e-01	ci left: 9.684965e-06	ci right 1.998864e-05	k: 32	n:2260000
GPR158   2260000 perm   2295 sec   (985 perm/sec)   p_kst 1.415929e-05   p_cons 3.084358e-01   p_joint 1.367257e-04

Joint ci ratio: 2.297797e-01	ci left: 1.134722e-04	ci right 1.433343e-04	k: 290	n:2270000
Cons ci ratio: 3.895797e-03	ci left: 3.078450e-01	ci right 3.090471e-01	k: 700172	n:2270000
KS ci ratio: 6.722693e-01	ci left: 1.000693e-05	ci right 2.041592e-05	k: 33	n:2270000
GPR158   2270000 perm   2314 sec   (981 perm/sec)   p_kst 1.453744e-05   p_cons 3.084458e-01   p_joint 1.277533e-04

Joint ci ratio: 2.286043e-01	ci left: 1.142147e-04	ci right 1.440968e-04	k: 293	n:2280000
Cons ci ratio: 3.886919e-03	ci left: 3.078821e-01	ci right 3.090816e-01	k: 703338	n:2280000
KS ci ratio: 6.722693e-01	ci left: 9.963039e-06	ci right 2.032637e-05	k: 33	n:2280000
GPR158   2280000 perm   2332 sec   (978 perm/sec)   p_kst 1.447368e-05   p_cons 3.084816e-01   p_joint 1.285088e-04

Joint ci ratio: 2.286043e-01	ci left: 1.137160e-04	ci right 1.434676e-04	k: 293	n:2290000
Cons ci ratio: 3.878493e-03	ci left: 3.078756e-01	ci right 3.090725e-01	k: 706405	n:2290000
KS ci ratio: 6.722693e-01	ci left: 9.919532e-06	ci right 2.023761e-05	k: 33	n:2290000
GPR158   2290000 perm   2350 sec   (975 perm/sec)   p_kst 1.441048e-05   p_cons 3.084738e-01   p_joint 1.279476e-04

Joint ci ratio: 2.278307e-01	ci left: 1.140414e-04	ci right 1.437630e-04	k: 295	n:2300000
Cons ci ratio: 3.870202e-03	ci left: 3.078605e-01	ci right 3.090547e-01	k: 709452	n:2300000
KS ci ratio: 6.722693e-01	ci left: 9.876403e-06	ci right 2.014962e-05	k: 33	n:2300000
GPR158   2300000 perm   2368 sec   (971 perm/sec)   p_kst 1.434783e-05   p_cons 3.084574e-01   p_joint 1.282609e-04

Joint ci ratio: 2.266847e-01	ci left: 1.147725e-04	ci right 1.445131e-04	k: 298	n:2310000
Cons ci ratio: 3.862033e-03	ci left: 3.078378e-01	ci right 3.090294e-01	k: 712481	n:2310000
KS ci ratio: 6.722694e-01	ci left: 9.833648e-06	ci right 2.006240e-05	k: 33	n:2310000
GPR158   2310000 perm   2387 sec   (968 perm/sec)   p_kst 1.428571e-05   p_cons 3.084333e-01   p_joint 1.290043e-04

Joint ci ratio: 2.263066e-01	ci left: 1.146844e-04	ci right 1.443457e-04	k: 299	n:2320000
Cons ci ratio: 3.853694e-03	ci left: 3.078398e-01	ci right 3.090288e-01	k: 715567	n:2320000
KS ci ratio: 6.722694e-01	ci left: 9.791262e-06	ci right 1.997592e-05	k: 33	n:2320000
GPR158   2320000 perm   2405 sec   (965 perm/sec)   p_kst 1.422414e-05   p_cons 3.084341e-01   p_joint 1.288793e-04

Joint ci ratio: 2.251834e-01	ci left: 1.154069e-04	ci right 1.450864e-04	k: 302	n:2330000
Cons ci ratio: 3.845498e-03	ci left: 3.078319e-01	ci right 3.090184e-01	k: 718630	n:2330000
KS ci ratio: 6.722694e-01	ci left: 9.749239e-06	ci right 1.989019e-05	k: 33	n:2330000
GPR158   2330000 perm   2424 sec   (961 perm/sec)   p_kst 1.416309e-05   p_cons 3.084249e-01   p_joint 1.296137e-04

Joint ci ratio: 2.244439e-01	ci left: 1.157203e-04	ci right 1.453691e-04	k: 304	n:2340000
Cons ci ratio: 3.837374e-03	ci left: 3.078220e-01	ci right 3.090059e-01	k: 721688	n:2340000
KS ci ratio: 6.722694e-01	ci left: 9.707575e-06	ci right 1.980519e-05	k: 33	n:2340000
GPR158   2340000 perm   2442 sec   (958 perm/sec)   p_kst 1.410256e-05   p_cons 3.084137e-01   p_joint 1.299145e-04

Joint ci ratio: 2.237116e-01	ci left: 1.160312e-04	ci right 1.456493e-04	k: 306	n:2350000
Cons ci ratio: 3.829250e-03	ci left: 3.078176e-01	ci right 3.089990e-01	k: 724759	n:2350000
KS ci ratio: 6.722694e-01	ci left: 9.666267e-06	ci right 1.972091e-05	k: 33	n:2350000
GPR158   2350000 perm   2460 sec   (955 perm/sec)   p_kst 1.404255e-05   p_cons 3.084081e-01   p_joint 1.302128e-04

Joint ci ratio: 2.233481e-01	ci left: 1.159395e-04	ci right 1.454795e-04	k: 307	n:2360000
Cons ci ratio: 3.821312e-03	ci left: 3.077985e-01	ci right 3.089774e-01	k: 727795	n:2360000
KS ci ratio: 6.722695e-01	ci left: 9.625308e-06	ci right 1.963735e-05	k: 33	n:2360000
GPR158   2360000 perm   2479 sec   (952 perm/sec)   p_kst 1.398305e-05   p_cons 3.083877e-01   p_joint 1.300847e-04

Joint ci ratio: 2.233482e-01	ci left: 1.154503e-04	ci right 1.448657e-04	k: 307	n:2370000
Cons ci ratio: 3.813128e-03	ci left: 3.078125e-01	ci right 3.089888e-01	k: 730909	n:2370000
KS ci ratio: 6.722695e-01	ci left: 9.584695e-06	ci right 1.955449e-05	k: 33	n:2370000
GPR158   2370000 perm   2498 sec   (949 perm/sec)   p_kst 1.392405e-05   p_cons 3.084004e-01   p_joint 1.295359e-04

Joint ci ratio: 2.229865e-01	ci left: 1.153619e-04	ci right 1.447006e-04	k: 308	n:2380000
Cons ci ratio: 3.805086e-03	ci left: 3.078162e-01	ci right 3.089901e-01	k: 733999	n:2380000
KS ci ratio: 6.722695e-01	ci left: 9.544423e-06	ci right 1.947233e-05	k: 33	n:2380000
GPR158   2380000 perm   2517 sec   (946 perm/sec)   p_kst 1.386555e-05   p_cons 3.084029e-01   p_joint 1.294118e-04

Joint ci ratio: 2.219118e-01	ci left: 1.160645e-04	ci right 1.454203e-04	k: 311	n:2390000
Cons ci ratio: 3.797169e-03	ci left: 3.078116e-01	ci right 3.089830e-01	k: 737069	n:2390000
KS ci ratio: 6.625959e-01	ci left: 9.851897e-06	ci right 1.987927e-05	k: 34	n:2390000
GPR158   2390000 perm   2535 sec   (943 perm/sec)   p_kst 1.422594e-05   p_cons 3.083971e-01   p_joint 1.301255e-04

Joint ci ratio: 2.219118e-01	ci left: 1.155809e-04	ci right 1.448143e-04	k: 311	n:2400000
Cons ci ratio: 3.789321e-03	ci left: 3.078049e-01	ci right 3.089739e-01	k: 740134	n:2400000
KS ci ratio: 6.625960e-01	ci left: 9.810848e-06	ci right 1.979644e-05	k: 34	n:2400000
GPR158   2400000 perm   2555 sec   (940 perm/sec)   p_kst 1.416667e-05   p_cons 3.083892e-01   p_joint 1.295833e-04

Joint ci ratio: 2.219119e-01	ci left: 1.151013e-04	ci right 1.442135e-04	k: 311	n:2410000
Cons ci ratio: 3.781579e-03	ci left: 3.077917e-01	ci right 3.089582e-01	k: 743183	n:2410000
KS ci ratio: 6.625960e-01	ci left: 9.770139e-06	ci right 1.971430e-05	k: 34	n:2410000
GPR158   2410000 perm   2574 sec   (936 perm/sec)   p_kst 1.410788e-05   p_cons 3.083747e-01   p_joint 1.290456e-04

Joint ci ratio: 2.219119e-01	ci left: 1.146257e-04	ci right 1.436175e-04	k: 311	n:2420000
Cons ci ratio: 3.773556e-03	ci left: 3.078157e-01	ci right 3.089798e-01	k: 746322	n:2420000
KS ci ratio: 6.625960e-01	ci left: 9.729766e-06	ci right 1.963283e-05	k: 34	n:2420000
GPR158   2420000 perm   2593 sec   (933 perm/sec)   p_kst 1.404959e-05   p_cons 3.083975e-01   p_joint 1.285124e-04

Joint ci ratio: 2.215572e-01	ci left: 1.145427e-04	ci right 1.434609e-04	k: 312	n:2430000
Cons ci ratio: 3.765834e-03	ci left: 3.078111e-01	ci right 3.089729e-01	k: 749392	n:2430000
KS ci ratio: 6.625960e-01	ci left: 9.689726e-06	ci right 1.955204e-05	k: 34	n:2430000
GPR158   2430000 perm   2612 sec   (930 perm/sec)   p_kst 1.399177e-05   p_cons 3.083918e-01   p_joint 1.283951e-04

Joint ci ratio: 2.215572e-01	ci left: 1.140732e-04	ci right 1.428729e-04	k: 312	n:2440000
Cons ci ratio: 3.757827e-03	ci left: 3.078443e-01	ci right 3.090037e-01	k: 752554	n:2440000
KS ci ratio: 6.625960e-01	ci left: 9.650014e-06	ci right 1.947191e-05	k: 34	n:2440000
GPR158   2440000 perm   2631 sec   (927 perm/sec)   p_kst 1.393443e-05   p_cons 3.084238e-01   p_joint 1.278689e-04

Joint ci ratio: 2.208527e-01	ci left: 1.143787e-04	ci right 1.431512e-04	k: 314	n:2450000
Cons ci ratio: 3.749750e-03	ci left: 3.078911e-01	ci right 3.090481e-01	k: 755750	n:2450000
KS ci ratio: 6.625961e-01	ci left: 9.610626e-06	ci right 1.939243e-05	k: 34	n:2450000
GPR158   2450000 perm   2650 sec   (924 perm/sec)   p_kst 1.387755e-05   p_cons 3.084694e-01   p_joint 1.281633e-04

Joint ci ratio: 2.201549e-01	ci left: 1.146819e-04	ci right 1.434272e-04	k: 316	n:2460000
Cons ci ratio: 3.742340e-03	ci left: 3.078672e-01	ci right 3.090219e-01	k: 758773	n:2460000
KS ci ratio: 6.625961e-01	ci left: 9.571558e-06	ci right 1.931360e-05	k: 34	n:2460000
GPR158   2460000 perm   2670 sec   (921 perm/sec)   p_kst 1.382114e-05   p_cons 3.084443e-01   p_joint 1.284553e-04

Joint ci ratio: 2.198085e-01	ci left: 1.146001e-04	ci right 1.432736e-04	k: 317	n:2470000
Cons ci ratio: 3.734808e-03	ci left: 3.078625e-01	ci right 3.090149e-01	k: 761843	n:2470000
KS ci ratio: 6.625961e-01	ci left: 9.532807e-06	ci right 1.923541e-05	k: 34	n:2470000
GPR158   2470000 perm   2689 sec   (918 perm/sec)   p_kst 1.376518e-05   p_cons 3.084385e-01   p_joint 1.283401e-04

Joint ci ratio: 2.237123e-01	ci left: 1.099489e-04	ci right 1.380145e-04	k: 306	n:2480000
Cons ci ratio: 3.727258e-03	ci left: 3.078651e-01	ci right 3.090152e-01	k: 764931	n:2480000
KS ci ratio: 6.625961e-01	ci left: 9.494368e-06	ci right 1.915785e-05	k: 34	n:2480000
GPR158   2480000 perm   2709 sec   (916 perm/sec)   p_kst 1.370968e-05   p_cons 3.084399e-01   p_joint 1.233871e-04

Joint ci ratio: 2.229871e-01	ci left: 1.102656e-04	ci right 1.383083e-04	k: 308	n:2490000
Cons ci ratio: 3.719911e-03	ci left: 3.078497e-01	ci right 3.089974e-01	k: 767974	n:2490000
KS ci ratio: 6.625961e-01	ci left: 9.456238e-06	ci right 1.908091e-05	k: 34	n:2490000
GPR158   2490000 perm   2728 sec   (913 perm/sec)   p_kst 1.365462e-05   p_cons 3.084233e-01   p_joint 1.236948e-04

Joint ci ratio: 2.381101e-01	ci left: 9.550132e-05	ci right 1.216798e-04	k: 270	n:2500000
Cons ci ratio: 3.712513e-03	ci left: 3.078451e-01	ci right 3.089905e-01	k: 771044	n:2500000
KS ci ratio: 6.533285e-01	ci left: 9.751532e-06	ci right 1.947056e-05	k: 35	n:2500000
GPR158   2500000 perm   2748 sec   (910 perm/sec)   p_kst 1.400000e-05   p_cons 3.084176e-01   p_joint 1.080000e-04

Joint ci ratio: 2.381101e-01	ci left: 9.512084e-05	ci right 1.211950e-04	k: 270	n:2510000
Cons ci ratio: 3.704997e-03	ci left: 3.078593e-01	ci right 3.090025e-01	k: 774161	n:2510000
KS ci ratio: 6.533285e-01	ci left: 9.712681e-06	ci right 1.939299e-05	k: 35	n:2510000
GPR158   2510000 perm   2768 sec   (907 perm/sec)   p_kst 1.394422e-05   p_cons 3.084307e-01   p_joint 1.075697e-04

Joint ci ratio: 2.449875e-01	ci left: 8.915113e-05	ci right 1.144022e-04	k: 255	n:2520000
Cons ci ratio: 3.697574e-03	ci left: 3.078679e-01	ci right 3.090087e-01	k: 777264	n:2520000
KS ci ratio: 6.533285e-01	ci left: 9.674138e-06	ci right 1.931603e-05	k: 35	n:2520000
GPR158   2520000 perm   2787 sec   (904 perm/sec)   p_kst 1.388889e-05   p_cons 3.084381e-01   p_joint 1.011905e-04

Joint ci ratio: 2.449876e-01	ci left: 8.879875e-05	ci right 1.139501e-04	k: 255	n:2530000
Cons ci ratio: 3.690124e-03	ci left: 3.078847e-01	ci right 3.090233e-01	k: 780388	n:2530000
KS ci ratio: 6.533286e-01	ci left: 9.635901e-06	ci right 1.923968e-05	k: 35	n:2530000
GPR158   2530000 perm   2809 sec   (901 perm/sec)   p_kst 1.383399e-05   p_cons 3.084538e-01   p_joint 1.007905e-04

Joint ci ratio: 2.449876e-01	ci left: 8.844915e-05	ci right 1.135014e-04	k: 255	n:2540000
Cons ci ratio: 3.682828e-03	ci left: 3.078887e-01	ci right 3.090251e-01	k: 783480	n:2540000
KS ci ratio: 6.533286e-01	ci left: 9.597964e-06	ci right 1.916394e-05	k: 35	n:2540000
GPR158   2540000 perm   2829 sec   (898 perm/sec)   p_kst 1.377953e-05   p_cons 3.084567e-01   p_joint 1.003937e-04

Joint ci ratio: 2.445105e-01	ci left: 8.847039e-05	ci right 1.134725e-04	k: 256	n:2550000
Cons ci ratio: 3.675625e-03	ci left: 3.078869e-01	ci right 3.090210e-01	k: 786557	n:2550000
KS ci ratio: 6.444392e-01	ci left: 9.887845e-06	ci right 1.954472e-05	k: 36	n:2550000
GPR158   2550000 perm   2850 sec   (895 perm/sec)   p_kst 1.411765e-05   p_cons 3.084537e-01   p_joint 1.003922e-04

Joint ci ratio: 2.445106e-01	ci left: 8.812480e-05	ci right 1.130293e-04	k: 256	n:2560000
Cons ci ratio: 3.668276e-03	ci left: 3.079069e-01	ci right 3.090388e-01	k: 789690	n:2560000
KS ci ratio: 6.444392e-01	ci left: 9.849221e-06	ci right 1.946837e-05	k: 36	n:2560000
GPR158   2560000 perm   2873 sec   (891 perm/sec)   p_kst 1.406250e-05   p_cons 3.084727e-01   p_joint 1.000000e-04

Joint ci ratio: 2.435646e-01	ci left: 8.851253e-05	ci right 1.134152e-04	k: 258	n:2570000
Cons ci ratio: 3.661228e-03	ci left: 3.078968e-01	ci right 3.090266e-01	k: 792746	n:2570000
KS ci ratio: 6.444393e-01	ci left: 9.810897e-06	ci right 1.939262e-05	k: 36	n:2570000
GPR158   2570000 perm   2896 sec   (887 perm/sec)   p_kst 1.400778e-05   p_cons 3.084615e-01   p_joint 1.003891e-04

Joint ci ratio: 2.430958e-01	ci left: 8.853343e-05	ci right 1.133867e-04	k: 259	n:2580000
Cons ci ratio: 3.654205e-03	ci left: 3.078888e-01	ci right 3.090163e-01	k: 795807	n:2580000
KS ci ratio: 6.444393e-01	ci left: 9.772870e-06	ci right 1.931746e-05	k: 36	n:2580000
GPR158   2580000 perm   2920 sec   (884 perm/sec)   p_kst 1.395349e-05   p_cons 3.084523e-01   p_joint 1.003876e-04

Joint ci ratio: 2.421661e-01	ci left: 8.891686e-05	ci right 1.137680e-04	k: 261	n:2590000
Cons ci ratio: 3.647508e-03	ci left: 3.078472e-01	ci right 3.089725e-01	k: 798781	n:2590000
KS ci ratio: 6.444393e-01	ci left: 9.735137e-06	ci right 1.924287e-05	k: 36	n:2590000
GPR158   2590000 perm   2943 sec   (880 perm/sec)   p_kst 1.389961e-05   p_cons 3.084097e-01   p_joint 1.007722e-04

Joint ci ratio: 2.454678e-01	ci left: 8.604702e-05	ci right 1.104740e-04	k: 254	n:2600000
Cons ci ratio: 3.640366e-03	ci left: 3.078625e-01	ci right 3.089856e-01	k: 801902	n:2600000
KS ci ratio: 6.444393e-01	ci left: 9.697694e-06	ci right 1.916886e-05	k: 36	n:2600000
GPR158   2600000 perm   2966 sec   (877 perm/sec)   p_kst 1.384615e-05   p_cons 3.084238e-01   p_joint 9.769231e-05

Joint ci ratio: 2.449879e-01	ci left: 8.607693e-05	ci right 1.104574e-04	k: 255	n:2610000
Cons ci ratio: 3.633317e-03	ci left: 3.078715e-01	ci right 3.089925e-01	k: 805007	n:2610000
KS ci ratio: 6.444393e-01	ci left: 9.660538e-06	ci right 1.909542e-05	k: 36	n:2610000
GPR158   2610000 perm   2986 sec   (874 perm/sec)   p_kst 1.379310e-05   p_cons 3.084318e-01   p_joint 9.770115e-05

Joint ci ratio: 2.449880e-01	ci left: 8.574839e-05	ci right 1.100358e-04	k: 255	n:2620000
Cons ci ratio: 3.626683e-03	ci left: 3.078366e-01	ci right 3.089554e-01	k: 807997	n:2620000
KS ci ratio: 6.444394e-01	ci left: 9.623666e-06	ci right 1.902254e-05	k: 36	n:2620000
GPR158   2620000 perm   3007 sec   (871 perm/sec)   p_kst 1.374046e-05   p_cons 3.083958e-01   p_joint 9.732824e-05

Joint ci ratio: 2.440365e-01	ci left: 8.613622e-05	ci right 1.104243e-04	k: 257	n:2630000
Cons ci ratio: 3.619720e-03	ci left: 3.078449e-01	ci right 3.089616e-01	k: 811100	n:2630000
KS ci ratio: 6.444394e-01	ci left: 9.587074e-06	ci right 1.895021e-05	k: 36	n:2630000
GPR158   2630000 perm   3027 sec   (869 perm/sec)   p_kst 1.368821e-05   p_cons 3.084030e-01   p_joint 9.771863e-05

Joint ci ratio: 2.430961e-01	ci left: 8.652129e-05	ci right 1.108098e-04	k: 259	n:2640000
Cons ci ratio: 3.612688e-03	ci left: 3.078660e-01	ci right 3.089806e-01	k: 814237	n:2640000
KS ci ratio: 6.444394e-01	ci left: 9.550759e-06	ci right 1.887843e-05	k: 36	n:2640000
GPR158   2640000 perm   3048 sec   (866 perm/sec)   p_kst 1.363636e-05   p_cons 3.084231e-01   p_joint 9.810606e-05

Joint ci ratio: 2.417055e-01	ci left: 8.725812e-05	ci right 1.115923e-04	k: 262	n:2650000
Cons ci ratio: 3.605885e-03	ci left: 3.078647e-01	ci right 3.089772e-01	k: 817315	n:2650000
KS ci ratio: 6.359033e-01	ci left: 9.830741e-06	ci right 1.924509e-05	k: 37	n:2650000
GPR158   2650000 perm   3069 sec   (864 perm/sec)   p_kst 1.396226e-05   p_cons 3.084208e-01   p_joint 9.886792e-05

Joint ci ratio: 2.417056e-01	ci left: 8.693008e-05	ci right 1.111728e-04	k: 262	n:2660000
Cons ci ratio: 3.599073e-03	ci left: 3.078691e-01	ci right 3.089795e-01	k: 820408	n:2660000
KS ci ratio: 6.359033e-01	ci left: 9.793783e-06	ci right 1.917274e-05	k: 37	n:2660000
GPR158   2660000 perm   3089 sec   (861 perm/sec)   p_kst 1.390977e-05   p_cons 3.084241e-01   p_joint 9.849624e-05

Joint ci ratio: 2.407917e-01	ci left: 8.730829e-05	ci right 1.115507e-04	k: 264	n:2670000
Cons ci ratio: 3.592410e-03	ci left: 3.078603e-01	ci right 3.089686e-01	k: 823466	n:2670000
KS ci ratio: 6.359033e-01	ci left: 9.757102e-06	ci right 1.910093e-05	k: 37	n:2670000
GPR158   2670000 perm   3110 sec   (859 perm/sec)   p_kst 1.385768e-05   p_cons 3.084142e-01   p_joint 9.887640e-05

Joint ci ratio: 2.407917e-01	ci left: 8.698251e-05	ci right 1.111345e-04	k: 264	n:2680000
Cons ci ratio: 3.585576e-03	ci left: 3.078762e-01	ci right 3.089824e-01	k: 826590	n:2680000
KS ci ratio: 6.359033e-01	ci left: 9.720695e-06	ci right 1.902966e-05	k: 37	n:2680000
GPR158   2680000 perm   3148 sec   (851 perm/sec)   p_kst 1.380597e-05   p_cons 3.084291e-01   p_joint 9.850746e-05

Joint ci ratio: 2.394401e-01	ci left: 8.770731e-05	ci right 1.119035e-04	k: 267	n:2690000
Cons ci ratio: 3.578816e-03	ci left: 3.078879e-01	ci right 3.089921e-01	k: 829703	n:2690000
KS ci ratio: 6.359034e-01	ci left: 9.684559e-06	ci right 1.895892e-05	k: 37	n:2690000
GPR158   2690000 perm   3171 sec   (848 perm/sec)   p_kst 1.375465e-05   p_cons 3.084398e-01   p_joint 9.925651e-05

Joint ci ratio: 2.389947e-01	ci left: 8.773064e-05	ci right 1.118816e-04	k: 268	n:2700000
Cons ci ratio: 3.572339e-03	ci left: 3.078702e-01	ci right 3.089724e-01	k: 832737	n:2700000
KS ci ratio: 6.359034e-01	ci left: 9.648690e-06	ci right 1.888870e-05	k: 37	n:2700000
GPR158   2700000 perm   3196 sec   (845 perm/sec)   p_kst 1.370370e-05   p_cons 3.084211e-01   p_joint 9.925926e-05

Joint ci ratio: 2.385517e-01	ci left: 8.775384e-05	ci right 1.118598e-04	k: 269	n:2710000
Cons ci ratio: 3.565742e-03	ci left: 3.078712e-01	ci right 3.089713e-01	k: 835821	n:2710000
KS ci ratio: 6.359034e-01	ci left: 9.613086e-06	ci right 1.881900e-05	k: 37	n:2710000
GPR158   2710000 perm   3217 sec   (842 perm/sec)   p_kst 1.365314e-05   p_cons 3.084210e-01   p_joint 9.926199e-05

Joint ci ratio: 2.385517e-01	ci left: 8.743121e-05	ci right 1.114485e-04	k: 269	n:2720000
Cons ci ratio: 3.559053e-03	ci left: 3.078876e-01	ci right 3.089856e-01	k: 838947	n:2720000
KS ci ratio: 6.359034e-01	ci left: 9.577743e-06	ci right 1.874981e-05	k: 37	n:2720000
GPR158   2720000 perm   3240 sec   (840 perm/sec)   p_kst 1.360294e-05   p_cons 3.084364e-01   p_joint 9.889706e-05

Joint ci ratio: 2.381112e-01	ci left: 8.745538e-05	ci right 1.114284e-04	k: 270	n:2730000
Cons ci ratio: 3.552689e-03	ci left: 3.078694e-01	ci right 3.089654e-01	k: 841979	n:2730000
KS ci ratio: 6.359034e-01	ci left: 9.542660e-06	ci right 1.868113e-05	k: 37	n:2730000
GPR158   2730000 perm   3268 sec   (835 perm/sec)   p_kst 1.355311e-05   p_cons 3.084172e-01   p_joint 9.890110e-05

Joint ci ratio: 2.381112e-01	ci left: 8.713620e-05	ci right 1.110218e-04	k: 270	n:2740000
Cons ci ratio: 3.546121e-03	ci left: 3.078798e-01	ci right 3.089739e-01	k: 845089	n:2740000
KS ci ratio: 6.359034e-01	ci left: 9.507833e-06	ci right 1.861295e-05	k: 37	n:2740000
GPR158   2740000 perm   3308 sec   (828 perm/sec)   p_kst 1.350365e-05   p_cons 3.084266e-01   p_joint 9.854015e-05

Joint ci ratio: 2.368040e-01	ci left: 8.784535e-05	ci right 1.117737e-04	k: 273	n:2750000
Cons ci ratio: 3.539714e-03	ci left: 3.078753e-01	ci right 3.089673e-01	k: 848158	n:2750000
KS ci ratio: 6.359035e-01	ci left: 9.473259e-06	ci right 1.854527e-05	k: 37	n:2750000
GPR158   2750000 perm   3331 sec   (825 perm/sec)   p_kst 1.345455e-05   p_cons 3.084211e-01   p_joint 9.927273e-05

Joint ci ratio: 2.368041e-01	ci left: 8.752707e-05	ci right 1.113688e-04	k: 273	n:2760000
Cons ci ratio: 3.533179e-03	ci left: 3.078903e-01	ci right 3.089804e-01	k: 851281	n:2760000
KS ci ratio: 6.359035e-01	ci left: 9.438935e-06	ci right 1.847808e-05	k: 37	n:2760000
GPR158   2760000 perm   3353 sec   (823 perm/sec)   p_kst 1.340580e-05   p_cons 3.084351e-01   p_joint 9.891304e-05

Joint ci ratio: 2.359445e-01	ci left: 8.789036e-05	ci right 1.117314e-04	k: 275	n:2770000
Cons ci ratio: 3.526773e-03	ci left: 3.078940e-01	ci right 3.089822e-01	k: 854373	n:2770000
KS ci ratio: 6.359035e-01	ci left: 9.404860e-06	ci right 1.841137e-05	k: 37	n:2770000
GPR158   2770000 perm   3375 sec   (821 perm/sec)   p_kst 1.335740e-05   p_cons 3.084379e-01   p_joint 9.927798e-05

Joint ci ratio: 2.355182e-01	ci left: 8.791267e-05	ci right 1.117104e-04	k: 276	n:2780000
Cons ci ratio: 3.520503e-03	ci left: 3.078855e-01	ci right 3.089717e-01	k: 857431	n:2780000
KS ci ratio: 6.359035e-01	ci left: 9.371029e-06	ci right 1.834514e-05	k: 37	n:2780000
GPR158   2780000 perm   3397 sec   (818 perm/sec)   p_kst 1.330935e-05   p_cons 3.084284e-01   p_joint 9.928058e-05

Joint ci ratio: 2.355182e-01	ci left: 8.759757e-05	ci right 1.113100e-04	k: 276	n:2790000
Cons ci ratio: 3.514224e-03	ci left: 3.078821e-01	ci right 3.089663e-01	k: 860503	n:2790000
KS ci ratio: 6.359035e-01	ci left: 9.337441e-06	ci right 1.827939e-05	k: 37	n:2790000
GPR158   2790000 perm   3418 sec   (816 perm/sec)   p_kst 1.326165e-05   p_cons 3.084240e-01   p_joint 9.892473e-05

Joint ci ratio: 2.342531e-01	ci left: 8.829311e-05	ci right 1.120468e-04	k: 279	n:2800000
Cons ci ratio: 3.507782e-03	ci left: 3.079026e-01	ci right 3.089849e-01	k: 863642	n:2800000
KS ci ratio: 6.359035e-01	ci left: 9.304093e-06	ci right 1.821411e-05	k: 37	n:2800000
GPR158   2800000 perm   3441 sec   (814 perm/sec)   p_kst 1.321429e-05   p_cons 3.084436e-01   p_joint 9.964286e-05

Joint ci ratio: 2.330080e-01	ci left: 8.898403e-05	ci right 1.127781e-04	k: 282	n:2810000
Cons ci ratio: 3.501709e-03	ci left: 3.078824e-01	ci right 3.089628e-01	k: 866667	n:2810000
KS ci ratio: 6.276979e-01	ci left: 9.569790e-06	ci right 1.856151e-05	k: 38	n:2810000
GPR158   2810000 perm   3463 sec   (811 perm/sec)   p_kst 1.352313e-05   p_cons 3.084224e-01   p_joint 1.003559e-04

Joint ci ratio: 2.321890e-01	ci left: 8.933638e-05	ci right 1.131286e-04	k: 284	n:2820000
Cons ci ratio: 3.495600e-03	ci left: 3.078706e-01	ci right 3.089490e-01	k: 869715	n:2820000
KS ci ratio: 6.276979e-01	ci left: 9.535855e-06	ci right 1.849569e-05	k: 38	n:2820000
GPR158   2820000 perm   3492 sec   (808 perm/sec)   p_kst 1.347518e-05   p_cons 3.084096e-01   p_joint 1.007092e-04

Joint ci ratio: 2.321890e-01	ci left: 8.902070e-05	ci right 1.127289e-04	k: 284	n:2830000
Cons ci ratio: 3.489514e-03	ci left: 3.078598e-01	ci right 3.089363e-01	k: 872766	n:2830000
KS ci ratio: 6.276979e-01	ci left: 9.502159e-06	ci right 1.843033e-05	k: 38	n:2830000
GPR158   2830000 perm   3516 sec   (805 perm/sec)   p_kst 1.342756e-05   p_cons 3.083979e-01   p_joint 1.003534e-04

Joint ci ratio: 2.317827e-01	ci left: 8.903890e-05	ci right 1.127045e-04	k: 285	n:2840000
Cons ci ratio: 3.483503e-03	ci left: 3.078439e-01	ci right 3.089185e-01	k: 875802	n:2840000
KS ci ratio: 6.276979e-01	ci left: 9.468701e-06	ci right 1.836544e-05	k: 38	n:2840000
GPR158   2840000 perm   3538 sec   (803 perm/sec)   p_kst 1.338028e-05   p_cons 3.083810e-01   p_joint 1.003521e-04

Joint ci ratio: 2.313786e-01	ci left: 8.905701e-05	ci right 1.126802e-04	k: 286	n:2850000
Cons ci ratio: 3.477297e-03	ci left: 3.078558e-01	ci right 3.089285e-01	k: 878917	n:2850000
KS ci ratio: 6.276980e-01	ci left: 9.435477e-06	ci right 1.830100e-05	k: 38	n:2850000
GPR158   2850000 perm   3560 sec   (801 perm/sec)   p_kst 1.333333e-05   p_cons 3.083919e-01   p_joint 1.003509e-04

Joint ci ratio: 2.305765e-01	ci left: 8.940446e-05	ci right 1.130259e-04	k: 288	n:2860000
Cons ci ratio: 3.471246e-03	ci left: 3.078525e-01	ci right 3.089234e-01	k: 881989	n:2860000
KS ci ratio: 6.198020e-01	ci left: 9.696805e-06	ci right 1.864131e-05	k: 39	n:2860000
GPR158   2860000 perm   3581 sec   (799 perm/sec)   p_kst 1.363636e-05   p_cons 3.083878e-01   p_joint 1.006993e-04

Joint ci ratio: 2.301787e-01	ci left: 8.942127e-05	ci right 1.130006e-04	k: 289	n:2870000
Cons ci ratio: 3.465131e-03	ci left: 3.078612e-01	ci right 3.089301e-01	k: 885095	n:2870000
KS ci ratio: 6.198020e-01	ci left: 9.663018e-06	ci right 1.857636e-05	k: 39	n:2870000
GPR158   2870000 perm   3607 sec   (796 perm/sec)   p_kst 1.358885e-05   p_cons 3.083955e-01   p_joint 1.006969e-04

Joint ci ratio: 2.293890e-01	ci left: 8.976525e-05	ci right 1.133426e-04	k: 291	n:2880000
Cons ci ratio: 3.459068e-03	ci left: 3.078673e-01	ci right 3.089344e-01	k: 888194	n:2880000
KS ci ratio: 6.198020e-01	ci left: 9.629466e-06	ci right 1.851186e-05	k: 39	n:2880000
GPR158   2880000 perm   3630 sec   (793 perm/sec)   p_kst 1.354167e-05   p_cons 3.084007e-01   p_joint 1.010417e-04

Joint ci ratio: 2.289972e-01	ci left: 8.978080e-05	ci right 1.133163e-04	k: 292	n:2890000
Cons ci ratio: 3.453252e-03	ci left: 3.078468e-01	ci right 3.089120e-01	k: 891216	n:2890000
KS ci ratio: 6.198020e-01	ci left: 9.596146e-06	ci right 1.844780e-05	k: 39	n:2890000
GPR158   2890000 perm   3652 sec   (791 perm/sec)   p_kst 1.349481e-05   p_cons 3.083792e-01   p_joint 1.010381e-04

Joint ci ratio: 2.289972e-01	ci left: 8.947121e-05	ci right 1.129255e-04	k: 292	n:2900000
Cons ci ratio: 3.447429e-03	ci left: 3.078309e-01	ci right 3.088943e-01	k: 894251	n:2900000
KS ci ratio: 6.198020e-01	ci left: 9.563056e-06	ci right 1.838419e-05	k: 39	n:2900000
GPR158   2900000 perm   3675 sec   (789 perm/sec)   p_kst 1.344828e-05   p_cons 3.083624e-01   p_joint 1.006897e-04

Joint ci ratio: 2.286075e-01	ci left: 8.948770e-05	ci right 1.129008e-04	k: 293	n:2910000
Cons ci ratio: 3.441654e-03	ci left: 3.078127e-01	ci right 3.088743e-01	k: 897279	n:2910000
KS ci ratio: 6.198021e-01	ci left: 9.530193e-06	ci right 1.832101e-05	k: 39	n:2910000
GPR158   2910000 perm   3698 sec   (787 perm/sec)   p_kst 1.340206e-05   p_cons 3.083433e-01   p_joint 1.006873e-04

Joint ci ratio: 2.282197e-01	ci left: 8.950410e-05	ci right 1.128762e-04	k: 294	n:2920000
Cons ci ratio: 3.435570e-03	ci left: 3.078368e-01	ci right 3.088965e-01	k: 900430	n:2920000
KS ci ratio: 6.198021e-01	ci left: 9.497555e-06	ci right 1.825827e-05	k: 39	n:2920000
GPR158   2920000 perm   3735 sec   (782 perm/sec)   p_kst 1.335616e-05   p_cons 3.083664e-01   p_joint 1.006849e-04

Joint ci ratio: 2.274499e-01	ci left: 8.984227e-05	ci right 1.132124e-04	k: 296	n:2930000
Cons ci ratio: 3.429682e-03	ci left: 3.078402e-01	ci right 3.088981e-01	k: 903521	n:2930000
KS ci ratio: 6.198021e-01	ci left: 9.465140e-06	ci right 1.819596e-05	k: 39	n:2930000
GPR158   2930000 perm   3768 sec   (778 perm/sec)   p_kst 1.331058e-05   p_cons 3.083689e-01   p_joint 1.010239e-04

Joint ci ratio: 2.489097e-01	ci left: 7.386246e-05	ci right 9.517005e-05	k: 247	n:2940000
Cons ci ratio: 3.423851e-03	ci left: 3.078402e-01	ci right 3.088963e-01	k: 906602	n:2940000
KS ci ratio: 6.198021e-01	ci left: 9.432946e-06	ci right 1.813407e-05	k: 39	n:2940000
GPR158   2940000 perm   3791 sec   (775 perm/sec)   p_kst 1.326531e-05   p_cons 3.083680e-01   p_joint 8.401361e-05

Joint ci ratio: 2.484094e-01	ci left: 7.392994e-05	ci right 9.520750e-05	k: 248	n:2950000
Cons ci ratio: 3.418140e-03	ci left: 3.078290e-01	ci right 3.088833e-01	k: 909650	n:2950000
KS ci ratio: 6.198021e-01	ci left: 9.400970e-06	ci right 1.807259e-05	k: 39	n:2950000
GPR158   2950000 perm   3814 sec   (773 perm/sec)   p_kst 1.322034e-05   p_cons 3.083559e-01   p_joint 8.406780e-05

Joint ci ratio: 2.474177e-01	ci left: 7.431388e-05	ci right 9.560342e-05	k: 250	n:2960000
Cons ci ratio: 3.412314e-03	ci left: 3.078357e-01	ci right 3.088883e-01	k: 912751	n:2960000
KS ci ratio: 6.121968e-01	ci left: 9.654269e-06	ci right 1.840152e-05	k: 40	n:2960000
GPR158   2960000 perm   3840 sec   (771 perm/sec)   p_kst 1.351351e-05   p_cons 3.083618e-01   p_joint 8.445946e-05

Joint ci ratio: 2.624927e-01	ci left: 6.523787e-05	ci right 8.525337e-05	k: 222	n:2970000
Cons ci ratio: 3.406913e-03	ci left: 3.077930e-01	ci right 3.088437e-01	k: 915705	n:2970000
KS ci ratio: 6.121968e-01	ci left: 9.621763e-06	ci right 1.833957e-05	k: 40	n:2970000
GPR158   2970000 perm   3895 sec   (763 perm/sec)   p_kst 1.346801e-05   p_cons 3.083182e-01   p_joint 7.474747e-05

Joint ci ratio: 2.619061e-01	ci left: 6.533246e-05	ci right 8.532486e-05	k: 223	n:2980000
Cons ci ratio: 3.401177e-03	ci left: 3.077958e-01	ci right 3.088448e-01	k: 918794	n:2980000
KS ci ratio: 6.121968e-01	ci left: 9.589475e-06	ci right 1.827803e-05	k: 40	n:2980000
GPR158   2980000 perm   3960 sec   (752 perm/sec)   p_kst 1.342282e-05   p_cons 3.083201e-01   p_joint 7.483221e-05

Joint ci ratio: 2.619062e-01	ci left: 6.511396e-05	ci right 8.503950e-05	k: 223	n:2990000
Cons ci ratio: 3.395466e-03	ci left: 3.077990e-01	ci right 3.088462e-01	k: 921884	n:2990000
KS ci ratio: 6.121968e-01	ci left: 9.557403e-06	ci right 1.821689e-05	k: 40	n:2990000
GPR158   2990000 perm   4011 sec   (746 perm/sec)   p_kst 1.337793e-05   p_cons 3.083224e-01   p_joint 7.458194e-05

Joint ci ratio: 2.619062e-01	ci left: 6.489691e-05	ci right 8.475603e-05	k: 223	n:3000000
Cons ci ratio: 3.389771e-03	ci left: 3.078038e-01	ci right 3.088493e-01	k: 924979	n:3000000
KS ci ratio: 6.121969e-01	ci left: 9.525545e-06	ci right 1.815617e-05	k: 40	n:3000000
GPR158   3000000 perm   4034 sec   (744 perm/sec)   p_kst 1.333333e-05   p_cons 3.083263e-01   p_joint 7.433333e-05

Joint ci ratio: 2.619062e-01	ci left: 6.468131e-05	ci right 8.447445e-05	k: 223	n:3010000
Cons ci ratio: 3.384271e-03	ci left: 3.077876e-01	ci right 3.088313e-01	k: 928011	n:3010000
KS ci ratio: 6.121969e-01	ci left: 9.493899e-06	ci right 1.809585e-05	k: 40	n:3010000
GPR158   3010000 perm   4058 sec   (742 perm/sec)   p_kst 1.328904e-05   p_cons 3.083093e-01   p_joint 7.408638e-05

Joint ci ratio: 2.619063e-01	ci left: 6.446713e-05	ci right 8.419474e-05	k: 223	n:3020000
Cons ci ratio: 3.378524e-03	ci left: 3.078060e-01	ci right 3.088480e-01	k: 931147	n:3020000
KS ci ratio: 6.121969e-01	ci left: 9.462462e-06	ci right 1.803593e-05	k: 40	n:3020000
GPR158   3020000 perm   4081 sec   (740 perm/sec)   p_kst 1.324503e-05   p_cons 3.083268e-01   p_joint 7.384106e-05

Joint ci ratio: 2.613236e-01	ci left: 6.456276e-05	ci right 8.426849e-05	k: 224	n:3030000
Cons ci ratio: 3.372985e-03	ci left: 3.078018e-01	ci right 3.088421e-01	k: 934215	n:3030000
KS ci ratio: 6.121969e-01	ci left: 9.431233e-06	ci right 1.797641e-05	k: 40	n:3030000
GPR158   3030000 perm   4104 sec   (738 perm/sec)   p_kst 1.320132e-05   p_cons 3.083218e-01   p_joint 7.392739e-05

Joint ci ratio: 2.607448e-01	ci left: 6.465781e-05	ci right 8.434172e-05	k: 225	n:3040000
Cons ci ratio: 3.367243e-03	ci left: 3.078266e-01	ci right 3.088652e-01	k: 937371	n:3040000
KS ci ratio: 6.048649e-01	ci left: 9.678408e-06	ci right 1.829638e-05	k: 41	n:3040000
GPR158   3040000 perm   4129 sec   (736 perm/sec)   p_kst 1.348684e-05   p_cons 3.083457e-01   p_joint 7.401316e-05

Joint ci ratio: 2.595986e-01	ci left: 6.505879e-05	ci right 8.476359e-05	k: 227	n:3050000
Cons ci ratio: 3.361645e-03	ci left: 3.078368e-01	ci right 3.088737e-01	k: 940483	n:3050000
KS ci ratio: 6.048649e-01	ci left: 9.646675e-06	ci right 1.823639e-05	k: 41	n:3050000
GPR158   3050000 perm   4169 sec   (732 perm/sec)   p_kst 1.344262e-05   p_cons 3.083551e-01   p_joint 7.442623e-05

Joint ci ratio: 2.595986e-01	ci left: 6.484618e-05	ci right 8.448659e-05	k: 227	n:3060000
Cons ci ratio: 3.355990e-03	ci left: 3.078577e-01	ci right 3.088930e-01	k: 943628	n:3060000
KS ci ratio: 6.048649e-01	ci left: 9.615150e-06	ci right 1.817680e-05	k: 41	n:3060000
GPR158   3060000 perm   4218 sec   (726 perm/sec)   p_kst 1.339869e-05   p_cons 3.083752e-01   p_joint 7.418301e-05

Joint ci ratio: 2.595987e-01	ci left: 6.463496e-05	ci right 8.421139e-05	k: 227	n:3070000
Cons ci ratio: 3.350629e-03	ci left: 3.078447e-01	ci right 3.088782e-01	k: 946669	n:3070000
KS ci ratio: 6.048649e-01	ci left: 9.583830e-06	ci right 1.811759e-05	k: 41	n:3070000
GPR158   3070000 perm   4277 sec   (718 perm/sec)   p_kst 1.335505e-05   p_cons 3.083612e-01   p_joint 7.394137e-05

Joint ci ratio: 2.584675e-01	ci left: 6.503230e-05	ci right 8.462939e-05	k: 229	n:3080000
Cons ci ratio: 3.345212e-03	ci left: 3.078421e-01	ci right 3.088739e-01	k: 949742	n:3080000
KS ci ratio: 5.977901e-01	ci left: 9.827909e-06	ci right 1.843236e-05	k: 42	n:3080000
GPR158   3080000 perm   4301 sec   (716 perm/sec)   p_kst 1.363636e-05   p_cons 3.083578e-01   p_joint 7.435065e-05

Joint ci ratio: 2.584675e-01	ci left: 6.482183e-05	ci right 8.435551e-05	k: 229	n:3090000
Cons ci ratio: 3.339621e-03	ci left: 3.078650e-01	ci right 3.088952e-01	k: 952894	n:3090000
KS ci ratio: 5.977901e-01	ci left: 9.796103e-06	ci right 1.837271e-05	k: 42	n:3090000
GPR158   3090000 perm   4325 sec   (714 perm/sec)   p_kst 1.359223e-05   p_cons 3.083799e-01   p_joint 7.411003e-05

Joint ci ratio: 2.654865e-01	ci left: 6.099589e-05	ci right 7.995887e-05	k: 217	n:3100000
Cons ci ratio: 3.334195e-03	ci left: 3.078704e-01	ci right 3.088990e-01	k: 955992	n:3100000
KS ci ratio: 5.977902e-01	ci left: 9.764503e-06	ci right 1.831344e-05	k: 42	n:3100000
GPR158   3100000 perm   4349 sec   (713 perm/sec)   p_kst 1.354839e-05   p_cons 3.083845e-01   p_joint 7.000000e-05

Joint ci ratio: 2.654866e-01	ci left: 6.079976e-05	ci right 7.970177e-05	k: 217	n:3110000
Cons ci ratio: 3.328661e-03	ci left: 3.078928e-01	ci right 3.089197e-01	k: 959143	n:3110000
KS ci ratio: 5.977902e-01	ci left: 9.733105e-06	ci right 1.825455e-05	k: 42	n:3110000
GPR158   3110000 perm   4373 sec   (711 perm/sec)   p_kst 1.350482e-05   p_cons 3.084061e-01   p_joint 6.977492e-05

Joint ci ratio: 2.630838e-01	ci left: 6.180201e-05	ci right 8.081310e-05	k: 221	n:3120000
Cons ci ratio: 3.323438e-03	ci left: 3.078789e-01	ci right 3.089041e-01	k: 962181	n:3120000
KS ci ratio: 5.909580e-01	ci left: 9.974156e-06	ci right 1.856429e-05	k: 43	n:3120000
GPR158   3120000 perm   4396 sec   (710 perm/sec)   p_kst 1.378205e-05   p_cons 3.083913e-01   p_joint 7.083333e-05

Joint ci ratio: 2.630838e-01	ci left: 6.160456e-05	ci right 8.055491e-05	k: 221	n:3130000
Cons ci ratio: 3.318291e-03	ci left: 3.078584e-01	ci right 3.088819e-01	k: 965198	n:3130000
KS ci ratio: 5.909580e-01	ci left: 9.942290e-06	ci right 1.850498e-05	k: 43	n:3130000
GPR158   3130000 perm   4421 sec   (708 perm/sec)   p_kst 1.373802e-05   p_cons 3.083700e-01   p_joint 7.060703e-05

Joint ci ratio: 2.630838e-01	ci left: 6.140837e-05	ci right 8.029837e-05	k: 221	n:3140000
Cons ci ratio: 3.312844e-03	ci left: 3.078796e-01	ci right 3.089016e-01	k: 968346	n:3140000
KS ci ratio: 5.909580e-01	ci left: 9.910626e-06	ci right 1.844604e-05	k: 43	n:3140000
GPR158   3140000 perm   4445 sec   (706 perm/sec)   p_kst 1.369427e-05   p_cons 3.083904e-01   p_joint 7.038217e-05

Joint ci ratio: 2.630839e-01	ci left: 6.121342e-05	ci right 8.004345e-05	k: 221	n:3150000
Cons ci ratio: 3.307618e-03	ci left: 3.078757e-01	ci right 3.088961e-01	k: 971415	n:3150000
KS ci ratio: 5.909580e-01	ci left: 9.879164e-06	ci right 1.838749e-05	k: 43	n:3150000
GPR158   3150000 perm   4469 sec   (705 perm/sec)   p_kst 1.365079e-05   p_cons 3.083857e-01   p_joint 7.015873e-05

Joint ci ratio: 2.613240e-01	ci left: 6.190668e-05	ci right 8.080177e-05	k: 224	n:3160000
Cons ci ratio: 3.302429e-03	ci left: 3.078703e-01	ci right 3.088890e-01	k: 974479	n:3160000
KS ci ratio: 5.843548e-01	ci left: 1.011725e-05	ci right 1.869234e-05	k: 44	n:3160000
GPR158   3160000 perm   4494 sec   (703 perm/sec)   p_kst 1.392405e-05   p_cons 3.083794e-01   p_joint 7.088608e-05

Joint ci ratio: 2.630839e-01	ci left: 6.082721e-05	ci right 7.953845e-05	k: 221	n:3170000
Cons ci ratio: 3.297405e-03	ci left: 3.078465e-01	ci right 3.088636e-01	k: 977485	n:3170000
KS ci ratio: 5.779682e-01	ci left: 1.035437e-05	ci right 1.899476e-05	k: 45	n:3170000
GPR158   3170000 perm   4519 sec   (702 perm/sec)   p_kst 1.419558e-05   p_cons 3.083549e-01   p_joint 6.971609e-05

Joint ci ratio: 2.619068e-01	ci left: 6.122349e-05	ci right 7.995855e-05	k: 223	n:3180000
Cons ci ratio: 3.292085e-03	ci left: 3.078644e-01	ci right 3.088799e-01	k: 980623	n:3180000
KS ci ratio: 5.779682e-01	ci left: 1.032181e-05	ci right 1.893503e-05	k: 45	n:3180000
GPR158   3180000 perm   4567 sec   (696 perm/sec)   p_kst 1.415094e-05   p_cons 3.083720e-01   p_joint 7.012579e-05

Joint ci ratio: 2.619068e-01	ci left: 6.103156e-05	ci right 7.970789e-05	k: 223	n:3190000
Cons ci ratio: 3.287038e-03	ci left: 3.078500e-01	ci right 3.088639e-01	k: 983658	n:3190000
KS ci ratio: 5.779682e-01	ci left: 1.028946e-05	ci right 1.887567e-05	k: 45	n:3190000
GPR158   3190000 perm   4610 sec   (692 perm/sec)   p_kst 1.410658e-05   p_cons 3.083567e-01   p_joint 6.990596e-05

Joint ci ratio: 2.619068e-01	ci left: 6.084084e-05	ci right 7.945881e-05	k: 223	n:3200000
Cons ci ratio: 3.281964e-03	ci left: 3.078422e-01	ci right 3.088544e-01	k: 986714	n:3200000
KS ci ratio: 5.779682e-01	ci left: 1.025730e-05	ci right 1.881669e-05	k: 45	n:3200000
GPR158   3200000 perm   4648 sec   (689 perm/sec)   p_kst 1.406250e-05   p_cons 3.083481e-01   p_joint 6.968750e-05

Joint ci ratio: 2.601703e-01	ci left: 6.152474e-05	ci right 8.020686e-05	k: 226	n:3210000
Cons ci ratio: 3.276878e-03	ci left: 3.078391e-01	ci right 3.088498e-01	k: 989785	n:3210000
KS ci ratio: 5.779682e-01	ci left: 1.022535e-05	ci right 1.875807e-05	k: 45	n:3210000
GPR158   3210000 perm   4672 sec   (687 perm/sec)   p_kst 1.401869e-05   p_cons 3.083442e-01   p_joint 7.040498e-05

Joint ci ratio: 2.601703e-01	ci left: 6.133367e-05	ci right 7.995777e-05	k: 226	n:3220000
Cons ci ratio: 3.271923e-03	ci left: 3.078220e-01	ci right 3.088311e-01	k: 992811	n:3220000
KS ci ratio: 5.779682e-01	ci left: 1.019359e-05	ci right 1.869981e-05	k: 45	n:3220000
GPR158   3220000 perm   4697 sec   (685 perm/sec)   p_kst 1.397516e-05   p_cons 3.083264e-01   p_joint 7.018634e-05

Joint ci ratio: 2.601704e-01	ci left: 6.114378e-05	ci right 7.971023e-05	k: 226	n:3230000
Cons ci ratio: 3.267078e-03	ci left: 3.077936e-01	ci right 3.088011e-01	k: 995800	n:3230000
KS ci ratio: 5.779683e-01	ci left: 1.016203e-05	ci right 1.864192e-05	k: 45	n:3230000
GPR158   3230000 perm   4723 sec   (684 perm/sec)   p_kst 1.393189e-05   p_cons 3.082972e-01   p_joint 6.996904e-05

Joint ci ratio: 2.601704e-01	ci left: 6.095506e-05	ci right 7.946421e-05	k: 226	n:3240000
Cons ci ratio: 3.261963e-03	ci left: 3.078034e-01	ci right 3.088093e-01	k: 998912	n:3240000
KS ci ratio: 5.779683e-01	ci left: 1.013067e-05	ci right 1.858438e-05	k: 45	n:3240000
GPR158   3240000 perm   4748 sec   (682 perm/sec)   p_kst 1.388889e-05   p_cons 3.083062e-01   p_joint 6.975309e-05

Joint ci ratio: 2.601704e-01	ci left: 6.076751e-05	ci right 7.921970e-05	k: 226	n:3250000
Cons ci ratio: 3.256730e-03	ci left: 3.078318e-01	ci right 3.088362e-01	k: 1002085	n:3250000
KS ci ratio: 5.779683e-01	ci left: 1.009950e-05	ci right 1.852720e-05	k: 45	n:3250000
GPR158   3250000 perm   4773 sec   (681 perm/sec)   p_kst 1.384615e-05   p_cons 3.083338e-01   p_joint 6.953846e-05

Joint ci ratio: 2.799915e-01	ci left: 5.171483e-05	ci right 6.882608e-05	k: 195	n:3260000
Cons ci ratio: 3.251690e-03	ci left: 3.078380e-01	ci right 3.088409e-01	k: 1005186	n:3260000
KS ci ratio: 5.779683e-01	ci left: 1.006852e-05	ci right 1.847037e-05	k: 45	n:3260000
GPR158   3260000 perm   4798 sec   (679 perm/sec)   p_kst 1.380368e-05   p_cons 3.083393e-01   p_joint 5.981595e-05

Joint ci ratio: 2.799916e-01	ci left: 5.155668e-05	ci right 6.861560e-05	k: 195	n:3270000
Cons ci ratio: 3.247006e-03	ci left: 3.078004e-01	ci right 3.088018e-01	k: 1008144	n:3270000
KS ci ratio: 5.779683e-01	ci left: 1.003773e-05	ci right 1.841388e-05	k: 45	n:3270000
GPR158   3270000 perm   4823 sec   (678 perm/sec)   p_kst 1.376147e-05   p_cons 3.083009e-01   p_joint 5.963303e-05

Joint ci ratio: 2.799916e-01	ci left: 5.139950e-05	ci right 6.840641e-05	k: 195	n:3280000
Cons ci ratio: 3.242238e-03	ci left: 3.077768e-01	ci right 3.087766e-01	k: 1011147	n:3280000
KS ci ratio: 5.779683e-01	ci left: 1.000712e-05	ci right 1.835774e-05	k: 45	n:3280000
GPR158   3280000 perm   4848 sec   (677 perm/sec)   p_kst 1.371951e-05   p_cons 3.082765e-01   p_joint 5.945122e-05

Joint ci ratio: 2.792800e-01	ci left: 5.152591e-05	ci right 6.852370e-05	k: 196	n:3290000
Cons ci ratio: 3.237546e-03	ci left: 3.077460e-01	ci right 3.087443e-01	k: 1014126	n:3290000
KS ci ratio: 5.779683e-01	ci left: 9.976707e-06	ci right 1.830195e-05	k: 45	n:3290000
GPR158   3290000 perm   4873 sec   (675 perm/sec)   p_kst 1.367781e-05   p_cons 3.082450e-01   p_joint 5.957447e-05

Joint ci ratio: 2.792801e-01	ci left: 5.136977e-05	ci right 6.831605e-05	k: 196	n:3300000
Cons ci ratio: 3.232734e-03	ci left: 3.077339e-01	ci right 3.087306e-01	k: 1017166	n:3300000
KS ci ratio: 5.779684e-01	ci left: 9.946474e-06	ci right 1.824649e-05	k: 45	n:3300000
GPR158   3300000 perm   4899 sec   (674 perm/sec)   p_kst 1.363636e-05   p_cons 3.082321e-01   p_joint 5.939394e-05

Joint ci ratio: 2.792801e-01	ci left: 5.121457e-05	ci right 6.810966e-05	k: 196	n:3310000
Cons ci ratio: 3.227732e-03	ci left: 3.077500e-01	ci right 3.087452e-01	k: 1020299	n:3310000
KS ci ratio: 5.779684e-01	ci left: 9.916424e-06	ci right 1.819136e-05	k: 45	n:3310000
GPR158   3310000 perm   4924 sec   (672 perm/sec)   p_kst 1.359517e-05   p_cons 3.082474e-01   p_joint 5.921450e-05

Joint ci ratio: 2.792801e-01	ci left: 5.106031e-05	ci right 6.790451e-05	k: 196	n:3320000
Cons ci ratio: 3.222891e-03	ci left: 3.077476e-01	ci right 3.087413e-01	k: 1023371	n:3320000
KS ci ratio: 5.779684e-01	ci left: 9.886555e-06	ci right 1.813657e-05	k: 45	n:3320000
GPR158   3320000 perm   4949 sec   (671 perm/sec)   p_kst 1.355422e-05   p_cons 3.082443e-01   p_joint 5.903614e-05

Joint ci ratio: 2.792801e-01	ci left: 5.090698e-05	ci right 6.770059e-05	k: 196	n:3330000
Cons ci ratio: 3.217920e-03	ci left: 3.077653e-01	ci right 3.087575e-01	k: 1026510	n:3330000
KS ci ratio: 5.779684e-01	ci left: 9.856866e-06	ci right 1.808210e-05	k: 45	n:3330000
GPR158   3330000 perm   4974 sec   (669 perm/sec)   p_kst 1.351351e-05   p_cons 3.082613e-01   p_joint 5.885886e-05

Joint ci ratio: 2.771775e-01	ci left: 5.159011e-05	ci right 6.845860e-05	k: 199	n:3340000
Cons ci ratio: 3.213159e-03	ci left: 3.077581e-01	ci right 3.087488e-01	k: 1029566	n:3340000
KS ci ratio: 5.717867e-01	ci left: 1.008319e-05	ci right 1.837048e-05	k: 46	n:3340000
GPR158   3340000 perm   5000 sec   (668 perm/sec)   p_kst 1.377246e-05   p_cons 3.082533e-01   p_joint 5.958084e-05

Joint ci ratio: 2.764871e-01	ci left: 5.171390e-05	ci right 6.857342e-05	k: 200	n:3350000
Cons ci ratio: 3.208197e-03	ci left: 3.077804e-01	ci right 3.087697e-01	k: 1032721	n:3350000
KS ci ratio: 5.717867e-01	ci left: 1.005309e-05	ci right 1.831565e-05	k: 46	n:3350000
GPR158   3350000 perm   5026 sec   (667 perm/sec)   p_kst 1.373134e-05   p_cons 3.082749e-01   p_joint 5.970149e-05

Joint ci ratio: 2.764872e-01	ci left: 5.155998e-05	ci right 6.836934e-05	k: 200	n:3360000
Cons ci ratio: 3.203443e-03	ci left: 3.077780e-01	ci right 3.087658e-01	k: 1035793	n:3360000
KS ci ratio: 5.717867e-01	ci left: 1.002317e-05	ci right 1.826113e-05	k: 46	n:3360000
GPR158   3360000 perm   5051 sec   (665 perm/sec)   p_kst 1.369048e-05   p_cons 3.082717e-01   p_joint 5.952381e-05

Joint ci ratio: 2.758019e-01	ci left: 5.168318e-05	ci right 6.848369e-05	k: 201	n:3370000
Cons ci ratio: 3.198608e-03	ci left: 3.077892e-01	ci right 3.087755e-01	k: 1038911	n:3370000
KS ci ratio: 5.717867e-01	ci left: 9.993424e-06	ci right 1.820695e-05	k: 46	n:3370000
GPR158   3370000 perm   5077 sec   (664 perm/sec)   p_kst 1.364985e-05   p_cons 3.082822e-01   p_joint 5.964392e-05

Joint ci ratio: 2.758020e-01	ci left: 5.153027e-05	ci right 6.828107e-05	k: 201	n:3380000
Cons ci ratio: 3.193793e-03	ci left: 3.078006e-01	ci right 3.087855e-01	k: 1042030	n:3380000
KS ci ratio: 5.717867e-01	ci left: 9.963857e-06	ci right 1.815308e-05	k: 46	n:3380000
GPR158   3380000 perm   5102 sec   (662 perm/sec)   p_kst 1.360947e-05   p_cons 3.082929e-01   p_joint 5.946746e-05

Joint ci ratio: 2.751218e-01	ci left: 5.165288e-05	ci right 6.839496e-05	k: 202	n:3390000
Cons ci ratio: 3.189174e-03	ci left: 3.077887e-01	ci right 3.087721e-01	k: 1045070	n:3390000
KS ci ratio: 5.717867e-01	ci left: 9.934465e-06	ci right 1.809953e-05	k: 46	n:3390000
GPR158   3390000 perm   5128 sec   (661 perm/sec)   p_kst 1.356932e-05   p_cons 3.082802e-01   p_joint 5.958702e-05

Joint ci ratio: 2.751218e-01	ci left: 5.150096e-05	ci right 6.819380e-05	k: 202	n:3400000
Cons ci ratio: 3.184770e-03	ci left: 3.077507e-01	ci right 3.087326e-01	k: 1048021	n:3400000
KS ci ratio: 5.717867e-01	ci left: 9.905246e-06	ci right 1.804630e-05	k: 46	n:3400000
GPR158   3400000 perm   5154 sec   (660 perm/sec)   p_kst 1.352941e-05   p_cons 3.082415e-01   p_joint 5.941176e-05

Joint ci ratio: 2.744466e-01	ci left: 5.162298e-05	ci right 6.830723e-05	k: 203	n:3410000
Cons ci ratio: 3.180174e-03	ci left: 3.077410e-01	ci right 3.087215e-01	k: 1051068	n:3410000
KS ci ratio: 5.717867e-01	ci left: 9.876199e-06	ci right 1.799338e-05	k: 46	n:3410000
GPR158   3410000 perm   5180 sec   (658 perm/sec)   p_kst 1.348974e-05   p_cons 3.082311e-01   p_joint 5.953079e-05

Joint ci ratio: 2.744467e-01	ci left: 5.147203e-05	ci right 6.810750e-05	k: 203	n:3420000
Cons ci ratio: 3.175690e-03	ci left: 3.077191e-01	ci right 3.086982e-01	k: 1054073	n:3420000
KS ci ratio: 5.717868e-01	ci left: 9.847321e-06	ci right 1.794076e-05	k: 46	n:3420000
GPR158   3420000 perm   5206 sec   (657 perm/sec)   p_kst 1.345029e-05   p_cons 3.082085e-01   p_joint 5.935673e-05

Joint ci ratio: 2.744467e-01	ci left: 5.132197e-05	ci right 6.790894e-05	k: 203	n:3430000
Cons ci ratio: 3.171168e-03	ci left: 3.077049e-01	ci right 3.086826e-01	k: 1057104	n:3430000
KS ci ratio: 5.717868e-01	ci left: 9.818611e-06	ci right 1.788846e-05	k: 46	n:3430000
GPR158   3430000 perm   5232 sec   (656 perm/sec)   p_kst 1.341108e-05   p_cons 3.081936e-01   p_joint 5.918367e-05

Joint ci ratio: 2.737765e-01	ci left: 5.144350e-05	ci right 6.802216e-05	k: 204	n:3440000
Cons ci ratio: 3.166682e-03	ci left: 3.076885e-01	ci right 3.086647e-01	k: 1060127	n:3440000
KS ci ratio: 5.717868e-01	ci left: 9.790069e-06	ci right 1.783646e-05	k: 46	n:3440000
GPR158   3440000 perm   5258 sec   (654 perm/sec)   p_kst 1.337209e-05   p_cons 3.081765e-01   p_joint 5.930233e-05

Joint ci ratio: 2.737765e-01	ci left: 5.129439e-05	ci right 6.782499e-05	k: 204	n:3450000
Cons ci ratio: 3.162192e-03	ci left: 3.076754e-01	ci right 3.086501e-01	k: 1063161	n:3450000
KS ci ratio: 5.717868e-01	ci left: 9.761692e-06	ci right 1.778476e-05	k: 46	n:3450000
GPR158   3450000 perm   5284 sec   (653 perm/sec)   p_kst 1.333333e-05   p_cons 3.081626e-01   p_joint 5.913043e-05

Joint ci ratio: 2.724506e-01	ci left: 5.168459e-05	ci right 6.824648e-05	k: 206	n:3460000
Cons ci ratio: 3.157655e-03	ci left: 3.076713e-01	ci right 3.086446e-01	k: 1066226	n:3460000
KS ci ratio: 5.657993e-01	ci left: 9.980893e-06	ci right 1.806355e-05	k: 47	n:3460000
GPR158   3460000 perm   5311 sec   (652 perm/sec)   p_kst 1.358382e-05   p_cons 3.081578e-01   p_joint 5.953757e-05

Joint ci ratio: 2.717949e-01	ci left: 5.180417e-05	ci right 6.835760e-05	k: 207	n:3470000
Cons ci ratio: 3.152960e-03	ci left: 3.076911e-01	ci right 3.086631e-01	k: 1069374	n:3470000
KS ci ratio: 5.657993e-01	ci left: 9.952129e-06	ci right 1.801150e-05	k: 47	n:3470000
GPR158   3470000 perm   5337 sec   (650 perm/sec)   p_kst 1.354467e-05   p_cons 3.081769e-01   p_joint 5.965418e-05

Joint ci ratio: 2.717949e-01	ci left: 5.165531e-05	ci right 6.816117e-05	k: 207	n:3480000
Cons ci ratio: 3.148420e-03	ci left: 3.076928e-01	ci right 3.086633e-01	k: 1072459	n:3480000
KS ci ratio: 5.657993e-01	ci left: 9.923531e-06	ci right 1.795974e-05	k: 47	n:3480000
GPR158   3480000 perm   5363 sec   (649 perm/sec)   p_kst 1.350575e-05   p_cons 3.081779e-01   p_joint 5.948276e-05

Joint ci ratio: 2.711439e-01	ci left: 5.177433e-05	ci right 6.827186e-05	k: 208	n:3490000
Cons ci ratio: 3.143787e-03	ci left: 3.077096e-01	ci right 3.086787e-01	k: 1075597	n:3490000
KS ci ratio: 5.657993e-01	ci left: 9.895097e-06	ci right 1.790828e-05	k: 47	n:3490000
GPR158   3490000 perm   5390 sec   (648 perm/sec)   p_kst 1.346705e-05   p_cons 3.081940e-01   p_joint 5.959885e-05

Joint ci ratio: 2.711439e-01	ci left: 5.162640e-05	ci right 6.807680e-05	k: 208	n:3500000
Cons ci ratio: 3.139484e-03	ci left: 3.076843e-01	ci right 3.086520e-01	k: 1078588	n:3500000
KS ci ratio: 5.657993e-01	ci left: 9.866825e-06	ci right 1.785711e-05	k: 47	n:3500000
GPR158   3500000 perm   5416 sec   (646 perm/sec)   p_kst 1.342857e-05   p_cons 3.081680e-01   p_joint 5.942857e-05

Joint ci ratio: 2.704976e-01	ci left: 5.174488e-05	ci right 6.818704e-05	k: 209	n:3510000
Cons ci ratio: 3.134859e-03	ci left: 3.077053e-01	ci right 3.086717e-01	k: 1081741	n:3510000
KS ci ratio: 5.599960e-01	ci left: 1.008304e-05	ci right 1.813131e-05	k: 48	n:3510000
GPR158   3510000 perm   5443 sec   (645 perm/sec)   p_kst 1.367521e-05   p_cons 3.081883e-01   p_joint 5.954416e-05

Joint ci ratio: 2.698558e-01	ci left: 5.186273e-05	ci right 6.829662e-05	k: 210	n:3520000
Cons ci ratio: 3.130332e-03	ci left: 3.077157e-01	ci right 3.086807e-01	k: 1084857	n:3520000
KS ci ratio: 5.543677e-01	ci left: 1.029845e-05	ci right 1.840354e-05	k: 49	n:3520000
GPR158   3520000 perm   5470 sec   (644 perm/sec)   p_kst 1.392045e-05   p_cons 3.081980e-01   p_joint 5.965909e-05

Joint ci ratio: 2.685858e-01	ci left: 5.224414e-05	ci right 6.870786e-05	k: 212	n:3530000
Cons ci ratio: 3.125841e-03	ci left: 3.077237e-01	ci right 3.086874e-01	k: 1087965	n:3530000
KS ci ratio: 5.489057e-01	ci left: 1.051304e-05	ci right 1.867383e-05	k: 50	n:3530000
GPR158   3530000 perm   5497 sec   (642 perm/sec)   p_kst 1.416431e-05   p_cons 3.082054e-01   p_joint 6.005666e-05

Joint ci ratio: 2.679575e-01	ci left: 5.236005e-05	ci right 6.881521e-05	k: 213	n:3540000
Cons ci ratio: 3.121409e-03	ci left: 3.077263e-01	ci right 3.086887e-01	k: 1091054	n:3540000
KS ci ratio: 5.489058e-01	ci left: 1.048334e-05	ci right 1.862108e-05	k: 50	n:3540000
GPR158   3540000 perm   5523 sec   (641 perm/sec)   p_kst 1.412429e-05   p_cons 3.082073e-01   p_joint 6.016949e-05

Joint ci ratio: 2.679576e-01	ci left: 5.221255e-05	ci right 6.862136e-05	k: 213	n:3550000
Cons ci ratio: 3.116843e-03	ci left: 3.077498e-01	ci right 3.087108e-01	k: 1094217	n:3550000
KS ci ratio: 5.489058e-01	ci left: 1.045381e-05	ci right 1.856863e-05	k: 50	n:3550000
GPR158   3550000 perm   5550 sec   (640 perm/sec)   p_kst 1.408451e-05   p_cons 3.082301e-01   p_joint 6.000000e-05

Joint ci ratio: 2.679576e-01	ci left: 5.206589e-05	ci right 6.842861e-05	k: 213	n:3560000
Cons ci ratio: 3.112413e-03	ci left: 3.077571e-01	ci right 3.087168e-01	k: 1097323	n:3560000
KS ci ratio: 5.489058e-01	ci left: 1.042445e-05	ci right 1.851647e-05	k: 50	n:3560000
GPR158   3560000 perm   5577 sec   (638 perm/sec)   p_kst 1.404494e-05   p_cons 3.082368e-01   p_joint 5.983146e-05

Joint ci ratio: 2.679576e-01	ci left: 5.192005e-05	ci right 6.823693e-05	k: 213	n:3570000
Cons ci ratio: 3.107950e-03	ci left: 3.077717e-01	ci right 3.087300e-01	k: 1100455	n:3570000
KS ci ratio: 5.489058e-01	ci left: 1.039525e-05	ci right 1.846460e-05	k: 50	n:3570000
GPR158   3570000 perm   5604 sec   (637 perm/sec)   p_kst 1.400560e-05   p_cons 3.082507e-01   p_joint 5.966387e-05

Joint ci ratio: 2.679576e-01	ci left: 5.177502e-05	ci right 6.804633e-05	k: 213	n:3580000
Cons ci ratio: 3.103353e-03	ci left: 3.078071e-01	ci right 3.087641e-01	k: 1103662	n:3580000
KS ci ratio: 5.489058e-01	ci left: 1.036621e-05	ci right 1.841302e-05	k: 50	n:3580000
GPR158   3580000 perm   5631 sec   (636 perm/sec)   p_kst 1.396648e-05   p_cons 3.082855e-01   p_joint 5.949721e-05

Joint ci ratio: 2.673337e-01	ci left: 5.189066e-05	ci right 6.815398e-05	k: 214	n:3590000
Cons ci ratio: 3.098975e-03	ci left: 3.078151e-01	ci right 3.087707e-01	k: 1106771	n:3590000
KS ci ratio: 5.489058e-01	ci left: 1.033733e-05	ci right 1.836173e-05	k: 50	n:3590000
GPR158   3590000 perm   5657 sec   (635 perm/sec)   p_kst 1.392758e-05   p_cons 3.082928e-01   p_joint 5.961003e-05

Joint ci ratio: 2.673338e-01	ci left: 5.174652e-05	ci right 6.796466e-05	k: 214	n:3600000
Cons ci ratio: 3.094766e-03	ci left: 3.078022e-01	ci right 3.087565e-01	k: 1109805	n:3600000
KS ci ratio: 5.489058e-01	ci left: 1.030862e-05	ci right 1.831073e-05	k: 50	n:3600000
GPR158   3600000 perm   5685 sec   (633 perm/sec)   p_kst 1.388889e-05   p_cons 3.082792e-01   p_joint 5.944444e-05

Joint ci ratio: 2.673338e-01	ci left: 5.160318e-05	ci right 6.777640e-05	k: 214	n:3610000
Cons ci ratio: 3.090485e-03	ci left: 3.078018e-01	ci right 3.087548e-01	k: 1112884	n:3610000
KS ci ratio: 5.489058e-01	ci left: 1.028006e-05	ci right 1.826001e-05	k: 50	n:3610000
GPR158   3610000 perm   5712 sec   (632 perm/sec)   p_kst 1.385042e-05   p_cons 3.082781e-01   p_joint 5.927978e-05

Joint ci ratio: 2.673338e-01	ci left: 5.146063e-05	ci right 6.758917e-05	k: 214	n:3620000
Cons ci ratio: 3.086325e-03	ci left: 3.077870e-01	ci right 3.087387e-01	k: 1115911	n:3620000
KS ci ratio: 5.489059e-01	ci left: 1.025166e-05	ci right 1.820956e-05	k: 50	n:3620000
GPR158   3620000 perm   5739 sec   (631 perm/sec)   p_kst 1.381215e-05   p_cons 3.082627e-01   p_joint 5.911602e-05

Joint ci ratio: 2.673338e-01	ci left: 5.131886e-05	ci right 6.740297e-05	k: 214	n:3630000
Cons ci ratio: 3.082171e-03	ci left: 3.077737e-01	ci right 3.087241e-01	k: 1118943	n:3630000
KS ci ratio: 5.489059e-01	ci left: 1.022342e-05	ci right 1.815940e-05	k: 50	n:3630000
GPR158   3630000 perm   5767 sec   (629 perm/sec)   p_kst 1.377410e-05   p_cons 3.082488e-01   p_joint 5.895317e-05

Joint ci ratio: 2.667143e-01	ci left: 5.143421e-05	ci right 6.751087e-05	k: 215	n:3640000
Cons ci ratio: 3.078082e-03	ci left: 3.077539e-01	ci right 3.087030e-01	k: 1121951	n:3640000
KS ci ratio: 5.436022e-01	ci left: 1.043212e-05	ci right 1.842182e-05	k: 51	n:3640000
GPR158   3640000 perm   5795 sec   (628 perm/sec)   p_kst 1.401099e-05   p_cons 3.082283e-01   p_joint 5.906593e-05

Joint ci ratio: 2.667143e-01	ci left: 5.129329e-05	ci right 6.732591e-05	k: 215	n:3650000
Cons ci ratio: 3.073856e-03	ci left: 3.077556e-01	ci right 3.087033e-01	k: 1125037	n:3650000
KS ci ratio: 5.436022e-01	ci left: 1.040354e-05	ci right 1.837135e-05	k: 51	n:3650000
GPR158   3650000 perm   5822 sec   (627 perm/sec)   p_kst 1.397260e-05   p_cons 3.082293e-01   p_joint 5.890411e-05

Joint ci ratio: 2.660990e-01	ci left: 5.140813e-05	ci right 6.743339e-05	k: 216	n:3660000
Cons ci ratio: 3.069638e-03	ci left: 3.077584e-01	ci right 3.087048e-01	k: 1128127	n:3660000
KS ci ratio: 5.436023e-01	ci left: 1.037511e-05	ci right 1.832116e-05	k: 51	n:3660000
GPR158   3660000 perm   5850 sec   (626 perm/sec)   p_kst 1.393443e-05   p_cons 3.082314e-01   p_joint 5.901639e-05

Joint ci ratio: 2.654880e-01	ci left: 5.152238e-05	ci right 6.754024e-05	k: 217	n:3670000
Cons ci ratio: 3.065550e-03	ci left: 3.077456e-01	ci right 3.086907e-01	k: 1131160	n:3670000
KS ci ratio: 5.436023e-01	ci left: 1.034684e-05	ci right 1.827124e-05	k: 51	n:3670000
GPR158   3670000 perm   5878 sec   (624 perm/sec)   p_kst 1.389646e-05   p_cons 3.082180e-01   p_joint 5.912807e-05

Joint ci ratio: 2.648811e-01	ci left: 5.163605e-05	ci right 6.764647e-05	k: 218	n:3680000
Cons ci ratio: 3.061355e-03	ci left: 3.077500e-01	ci right 3.086938e-01	k: 1134256	n:3680000
KS ci ratio: 5.436023e-01	ci left: 1.031873e-05	ci right 1.822159e-05	k: 51	n:3680000
GPR158   3680000 perm   5906 sec   (623 perm/sec)   p_kst 1.385870e-05   p_cons 3.082217e-01   p_joint 5.923913e-05

Joint ci ratio: 2.648812e-01	ci left: 5.149611e-05	ci right 6.746315e-05	k: 218	n:3690000
Cons ci ratio: 3.057113e-03	ci left: 3.077633e-01	ci right 3.087058e-01	k: 1137385	n:3690000
KS ci ratio: 5.436023e-01	ci left: 1.029076e-05	ci right 1.817220e-05	k: 51	n:3690000
GPR158   3690000 perm   5934 sec   (622 perm/sec)   p_kst 1.382114e-05   p_cons 3.082344e-01   p_joint 5.907859e-05

Joint ci ratio: 2.648812e-01	ci left: 5.135693e-05	ci right 6.728081e-05	k: 218	n:3700000
Cons ci ratio: 3.053135e-03	ci left: 3.077422e-01	ci right 3.086835e-01	k: 1140387	n:3700000
KS ci ratio: 5.436023e-01	ci left: 1.026295e-05	ci right 1.812309e-05	k: 51	n:3700000
GPR158   3700000 perm   5961 sec   (621 perm/sec)   p_kst 1.378378e-05   p_cons 3.082127e-01   p_joint 5.891892e-05

Joint ci ratio: 2.642785e-01	ci left: 5.147017e-05	ci right 6.738684e-05	k: 219	n:3710000
Cons ci ratio: 3.048965e-03	ci left: 3.077501e-01	ci right 3.086901e-01	k: 1143496	n:3710000
KS ci ratio: 5.436023e-01	ci left: 1.023529e-05	ci right 1.807424e-05	k: 51	n:3710000
GPR158   3710000 perm   5989 sec   (619 perm/sec)   p_kst 1.374663e-05   p_cons 3.082199e-01   p_joint 5.902965e-05

Joint ci ratio: 2.642785e-01	ci left: 5.133181e-05	ci right 6.720569e-05	k: 219	n:3720000
Cons ci ratio: 3.044863e-03	ci left: 3.077509e-01	ci right 3.086897e-01	k: 1146579	n:3720000
KS ci ratio: 5.436023e-01	ci left: 1.020777e-05	ci right 1.802566e-05	k: 51	n:3720000
GPR158   3720000 perm   6017 sec   (618 perm/sec)   p_kst 1.370968e-05   p_cons 3.082202e-01   p_joint 5.887097e-05

Joint ci ratio: 2.636799e-01	ci left: 5.144455e-05	ci right 6.731131e-05	k: 220	n:3730000
Cons ci ratio: 3.040769e-03	ci left: 3.077529e-01	ci right 3.086903e-01	k: 1149666	n:3730000
KS ci ratio: 5.436023e-01	ci left: 1.018041e-05	ci right 1.797733e-05	k: 51	n:3730000
GPR158   3730000 perm   6045 sec   (617 perm/sec)   p_kst 1.367292e-05   p_cons 3.082214e-01   p_joint 5.898123e-05

Joint ci ratio: 2.636799e-01	ci left: 5.130699e-05	ci right 6.713134e-05	k: 220	n:3740000
Cons ci ratio: 3.036799e-03	ci left: 3.077398e-01	ci right 3.086760e-01	k: 1152697	n:3740000
KS ci ratio: 5.436023e-01	ci left: 1.015318e-05	ci right 1.792926e-05	k: 51	n:3740000
GPR158   3740000 perm   6073 sec   (616 perm/sec)   p_kst 1.363636e-05   p_cons 3.082078e-01   p_joint 5.882353e-05

Joint ci ratio: 2.619082e-01	ci left: 5.191748e-05	ci right 6.780490e-05	k: 223	n:3750000
Cons ci ratio: 3.032702e-03	ci left: 3.077468e-01	ci right 3.086818e-01	k: 1155803	n:3750000
KS ci ratio: 5.285687e-01	ci left: 1.081774e-05	ci right 1.878884e-05	k: 54	n:3750000
GPR158   3750000 perm   6101 sec   (615 perm/sec)   p_kst 1.440000e-05   p_cons 3.082141e-01   p_joint 5.946667e-05

Joint ci ratio: 2.619082e-01	ci left: 5.177940e-05	ci right 6.762457e-05	k: 223	n:3760000
Cons ci ratio: 3.028769e-03	ci left: 3.077330e-01	ci right 3.086667e-01	k: 1158831	n:3760000
KS ci ratio: 5.285688e-01	ci left: 1.078897e-05	ci right 1.873886e-05	k: 54	n:3760000
GPR158   3760000 perm   6129 sec   (613 perm/sec)   p_kst 1.436170e-05   p_cons 3.081997e-01   p_joint 5.930851e-05

Joint ci ratio: 2.619082e-01	ci left: 5.164206e-05	ci right 6.744519e-05	k: 223	n:3770000
Cons ci ratio: 3.024683e-03	ci left: 3.077429e-01	ci right 3.086754e-01	k: 1161948	n:3770000
KS ci ratio: 5.285688e-01	ci left: 1.076035e-05	ci right 1.868916e-05	k: 54	n:3770000
GPR158   3770000 perm   6157 sec   (612 perm/sec)   p_kst 1.432361e-05   p_cons 3.082090e-01   p_joint 5.915119e-05

Joint ci ratio: 2.619082e-01	ci left: 5.150544e-05	ci right 6.726677e-05	k: 223	n:3780000
Cons ci ratio: 3.020734e-03	ci left: 3.077358e-01	ci right 3.086671e-01	k: 1165001	n:3780000
KS ci ratio: 5.285688e-01	ci left: 1.073189e-05	ci right 1.863972e-05	k: 54	n:3780000
GPR158   3780000 perm   6185 sec   (611 perm/sec)   p_kst 1.428571e-05   p_cons 3.082013e-01   p_joint 5.899471e-05

Joint ci ratio: 2.613255e-01	ci left: 5.161609e-05	ci right 6.737040e-05	k: 224	n:3790000
Cons ci ratio: 3.016640e-03	ci left: 3.077515e-01	ci right 3.086815e-01	k: 1168140	n:3790000
KS ci ratio: 5.285688e-01	ci left: 1.070357e-05	ci right 1.859054e-05	k: 54	n:3790000
GPR158   3790000 perm   6214 sec   (610 perm/sec)   p_kst 1.424802e-05   p_cons 3.082164e-01   p_joint 5.910290e-05

Joint ci ratio: 2.607467e-01	ci left: 5.172620e-05	ci right 6.747344e-05	k: 225	n:3800000
Cons ci ratio: 3.012616e-03	ci left: 3.077594e-01	ci right 3.086882e-01	k: 1171250	n:3800000
KS ci ratio: 5.285688e-01	ci left: 1.067540e-05	ci right 1.854161e-05	k: 54	n:3800000
GPR158   3800000 perm   6243 sec   (609 perm/sec)   p_kst 1.421053e-05   p_cons 3.082237e-01   p_joint 5.921053e-05

Joint ci ratio: 2.584693e-01	ci left: 5.257199e-05	ci right 6.841438e-05	k: 229	n:3810000
Cons ci ratio: 3.008718e-03	ci left: 3.077518e-01	ci right 3.086794e-01	k: 1174301	n:3810000
KS ci ratio: 5.192127e-01	ci left: 1.110285e-05	ci right 1.908675e-05	k: 56	n:3810000
GPR158   3810000 perm   6271 sec   (608 perm/sec)   p_kst 1.469816e-05   p_cons 3.082155e-01   p_joint 6.010499e-05

Joint ci ratio: 2.579092e-01	ci left: 5.267921e-05	ci right 6.851396e-05	k: 230	n:3820000
Cons ci ratio: 3.004772e-03	ci left: 3.077532e-01	ci right 3.086796e-01	k: 1177386	n:3820000
KS ci ratio: 5.147172e-01	ci left: 1.130139e-05	ci right 1.933245e-05	k: 57	n:3820000
GPR158   3820000 perm   6300 sec   (606 perm/sec)   p_kst 1.492147e-05   p_cons 3.082162e-01   p_joint 6.020942e-05

Joint ci ratio: 2.573528e-01	ci left: 5.278591e-05	ci right 6.861299e-05	k: 231	n:3830000
Cons ci ratio: 3.000871e-03	ci left: 3.077504e-01	ci right 3.086755e-01	k: 1180455	n:3830000
KS ci ratio: 5.147173e-01	ci left: 1.127188e-05	ci right 1.928197e-05	k: 57	n:3830000
GPR158   3830000 perm   6330 sec   (605 perm/sec)   p_kst 1.488251e-05   p_cons 3.082128e-01   p_joint 6.031332e-05

Joint ci ratio: 2.573528e-01	ci left: 5.264844e-05	ci right 6.843432e-05	k: 231	n:3840000
Cons ci ratio: 2.997013e-03	ci left: 3.077436e-01	ci right 3.086676e-01	k: 1183509	n:3840000
KS ci ratio: 5.147173e-01	ci left: 1.124253e-05	ci right 1.923176e-05	k: 57	n:3840000
GPR158   3840000 perm   6359 sec   (604 perm/sec)   p_kst 1.484375e-05   p_cons 3.082055e-01   p_joint 6.015625e-05

Joint ci ratio: 2.573528e-01	ci left: 5.251169e-05	ci right 6.825657e-05	k: 231	n:3850000
Cons ci ratio: 2.993038e-03	ci left: 3.077557e-01	ci right 3.086784e-01	k: 1186635	n:3850000
KS ci ratio: 5.147173e-01	ci left: 1.121333e-05	ci right 1.918181e-05	k: 57	n:3850000
GPR158   3850000 perm   6388 sec   (603 perm/sec)   p_kst 1.480519e-05   p_cons 3.082169e-01   p_joint 6.000000e-05

Joint ci ratio: 2.573528e-01	ci left: 5.237565e-05	ci right 6.807974e-05	k: 231	n:3860000
Cons ci ratio: 2.989164e-03	ci left: 3.077554e-01	ci right 3.086770e-01	k: 1189714	n:3860000
KS ci ratio: 5.147173e-01	ci left: 1.118428e-05	ci right 1.913211e-05	k: 57	n:3860000
GPR158   3860000 perm   6416 sec   (602 perm/sec)   p_kst 1.476684e-05   p_cons 3.082161e-01   p_joint 5.984456e-05

Joint ci ratio: 2.573529e-01	ci left: 5.224031e-05	ci right 6.790382e-05	k: 231	n:3870000
Cons ci ratio: 2.985341e-03	ci left: 3.077500e-01	ci right 3.086704e-01	k: 1192773	n:3870000
KS ci ratio: 5.147173e-01	ci left: 1.115538e-05	ci right 1.908267e-05	k: 57	n:3870000
GPR158   3870000 perm   6446 sec   (600 perm/sec)   p_kst 1.472868e-05   p_cons 3.082101e-01   p_joint 5.968992e-05

Joint ci ratio: 2.573529e-01	ci left: 5.210567e-05	ci right 6.772881e-05	k: 231	n:3880000
Cons ci ratio: 2.981467e-03	ci left: 3.077542e-01	ci right 3.086734e-01	k: 1195869	n:3880000
KS ci ratio: 5.147173e-01	ci left: 1.112663e-05	ci right 1.903349e-05	k: 57	n:3880000
GPR158   3880000 perm   6475 sec   (599 perm/sec)   p_kst 1.469072e-05   p_cons 3.082137e-01   p_joint 5.953608e-05

Joint ci ratio: 2.568000e-01	ci left: 5.221223e-05	ci right 6.782830e-05	k: 232	n:3890000
Cons ci ratio: 2.977600e-03	ci left: 3.077594e-01	ci right 3.086774e-01	k: 1198969	n:3890000
KS ci ratio: 5.147173e-01	ci left: 1.109802e-05	ci right 1.898456e-05	k: 57	n:3890000
GPR158   3890000 perm   6504 sec   (598 perm/sec)   p_kst 1.465296e-05   p_cons 3.082183e-01   p_joint 5.964010e-05

Joint ci ratio: 2.568000e-01	ci left: 5.207835e-05	ci right 6.765438e-05	k: 232	n:3900000
Cons ci ratio: 2.973648e-03	ci left: 3.077789e-01	ci right 3.086957e-01	k: 1202125	n:3900000
KS ci ratio: 5.147173e-01	ci left: 1.106957e-05	ci right 1.893589e-05	k: 57	n:3900000
GPR158   3900000 perm   6534 sec   (597 perm/sec)   p_kst 1.461538e-05   p_cons 3.082372e-01   p_joint 5.948718e-05

Joint ci ratio: 2.568001e-01	ci left: 5.194516e-05	ci right 6.748135e-05	k: 232	n:3910000
Cons ci ratio: 2.969912e-03	ci left: 3.077697e-01	ci right 3.086853e-01	k: 1205169	n:3910000
KS ci ratio: 5.147173e-01	ci left: 1.104126e-05	ci right 1.888746e-05	k: 57	n:3910000
GPR158   3910000 perm   6563 sec   (596 perm/sec)   p_kst 1.457801e-05   p_cons 3.082274e-01   p_joint 5.933504e-05

Joint ci ratio: 2.568001e-01	ci left: 5.181265e-05	ci right 6.730921e-05	k: 232	n:3920000
Cons ci ratio: 2.966141e-03	ci left: 3.077674e-01	ci right 3.086819e-01	k: 1208240	n:3920000
KS ci ratio: 5.147173e-01	ci left: 1.101309e-05	ci right 1.883927e-05	k: 57	n:3920000
GPR158   3920000 perm   6592 sec   (595 perm/sec)   p_kst 1.454082e-05   p_cons 3.082245e-01   p_joint 5.918367e-05

Joint ci ratio: 2.562508e-01	ci left: 5.191890e-05	ci right 6.740871e-05	k: 233	n:3930000
Cons ci ratio: 2.962592e-03	ci left: 3.077354e-01	ci right 3.086486e-01	k: 1211194	n:3930000
KS ci ratio: 5.147174e-01	ci left: 1.098507e-05	ci right 1.879134e-05	k: 57	n:3930000
GPR158   3930000 perm   6622 sec   (593 perm/sec)   p_kst 1.450382e-05   p_cons 3.081919e-01   p_joint 5.928753e-05

Joint ci ratio: 2.557049e-01	ci left: 5.202465e-05	ci right 6.750768e-05	k: 234	n:3940000
Cons ci ratio: 2.958835e-03	ci left: 3.077352e-01	ci right 3.086473e-01	k: 1214273	n:3940000
KS ci ratio: 5.147174e-01	ci left: 1.095719e-05	ci right 1.874364e-05	k: 57	n:3940000
GPR158   3940000 perm   6652 sec   (592 perm/sec)   p_kst 1.446701e-05   p_cons 3.081911e-01   p_joint 5.939086e-05

Joint ci ratio: 2.551626e-01	ci left: 5.212990e-05	ci right 6.760611e-05	k: 235	n:3950000
Cons ci ratio: 2.955134e-03	ci left: 3.077290e-01	ci right 3.086399e-01	k: 1217328	n:3950000
KS ci ratio: 5.147174e-01	ci left: 1.092945e-05	ci right 1.869619e-05	k: 57	n:3950000
GPR158   3950000 perm   6681 sec   (591 perm/sec)   p_kst 1.443038e-05   p_cons 3.081843e-01   p_joint 5.949367e-05

Joint ci ratio: 2.551626e-01	ci left: 5.199826e-05	ci right 6.743539e-05	k: 235	n:3960000
Cons ci ratio: 2.951474e-03	ci left: 3.077190e-01	ci right 3.086288e-01	k: 1220368	n:3960000
KS ci ratio: 5.147174e-01	ci left: 1.090185e-05	ci right 1.864898e-05	k: 57	n:3960000
GPR158   3960000 perm   6711 sec   (590 perm/sec)   p_kst 1.439394e-05   p_cons 3.081737e-01   p_joint 5.934343e-05

Joint ci ratio: 2.540882e-01	ci left: 5.233892e-05	ci right 6.780138e-05	k: 237	n:3970000
Cons ci ratio: 2.947844e-03	ci left: 3.077065e-01	ci right 3.086152e-01	k: 1223398	n:3970000
KS ci ratio: 5.147174e-01	ci left: 1.087439e-05	ci right 1.860200e-05	k: 57	n:3970000
GPR158   3970000 perm   6741 sec   (589 perm/sec)   p_kst 1.435768e-05   p_cons 3.081607e-01   p_joint 5.969773e-05

Joint ci ratio: 2.540882e-01	ci left: 5.220741e-05	ci right 6.763103e-05	k: 237	n:3980000
Cons ci ratio: 2.944117e-03	ci left: 3.077102e-01	ci right 3.086177e-01	k: 1226492	n:3980000
KS ci ratio: 5.147174e-01	ci left: 1.084706e-05	ci right 1.855527e-05	k: 57	n:3980000
GPR158   3980000 perm   6771 sec   (588 perm/sec)   p_kst 1.432161e-05   p_cons 3.081638e-01   p_joint 5.954774e-05

Joint ci ratio: 2.540882e-01	ci left: 5.207657e-05	ci right 6.746153e-05	k: 237	n:3990000
Cons ci ratio: 2.940561e-03	ci left: 3.076911e-01	ci right 3.085974e-01	k: 1229495	n:3990000
KS ci ratio: 5.147174e-01	ci left: 1.081988e-05	ci right 1.850876e-05	k: 57	n:3990000
GPR158   3990000 perm   6800 sec   (587 perm/sec)   p_kst 1.428571e-05   p_cons 3.081441e-01   p_joint 5.939850e-05

Joint ci ratio: 2.535561e-01	ci left: 5.218047e-05	ci right 6.755874e-05	k: 238	n:4000000
Cons ci ratio: 2.936975e-03	ci left: 3.076783e-01	ci right 3.085835e-01	k: 1232523	n:4000000
KS ci ratio: 5.147174e-01	ci left: 1.079283e-05	ci right 1.846249e-05	k: 57	n:4000000
GPR158   4000000 perm   6830 sec   (586 perm/sec)   p_kst 1.425000e-05   p_cons 3.081308e-01   p_joint 5.950000e-05

Joint ci ratio: 2.535561e-01	ci left: 5.205035e-05	ci right 6.739027e-05	k: 238	n:4010000
Cons ci ratio: 2.933197e-03	ci left: 3.076955e-01	ci right 3.085996e-01	k: 1235671	n:4010000
KS ci ratio: 5.147174e-01	ci left: 1.076591e-05	ci right 1.841645e-05	k: 57	n:4010000
GPR158   4010000 perm   6860 sec   (585 perm/sec)   p_kst 1.421446e-05   p_cons 3.081474e-01   p_joint 5.935162e-05

Joint ci ratio: 2.530273e-01	ci left: 5.215383e-05	ci right 6.748714e-05	k: 239	n:4020000
Cons ci ratio: 2.929497e-03	ci left: 3.077031e-01	ci right 3.086061e-01	k: 1238781	n:4020000
KS ci ratio: 5.147174e-01	ci left: 1.073913e-05	ci right 1.837064e-05	k: 57	n:4020000
GPR158   4020000 perm   6891 sec   (583 perm/sec)   p_kst 1.417910e-05   p_cons 3.081545e-01   p_joint 5.945274e-05

Joint ci ratio: 2.530273e-01	ci left: 5.202442e-05	ci right 6.731968e-05	k: 239	n:4030000
Cons ci ratio: 2.925812e-03	ci left: 3.077107e-01	ci right 3.086126e-01	k: 1241891	n:4030000
KS ci ratio: 5.147174e-01	ci left: 1.071248e-05	ci right 1.832505e-05	k: 57	n:4030000
GPR158   4030000 perm   6922 sec   (582 perm/sec)   p_kst 1.414392e-05   p_cons 3.081615e-01   p_joint 5.930521e-05

Joint ci ratio: 2.525018e-01	ci left: 5.212749e-05	ci right 6.741622e-05	k: 240	n:4040000
Cons ci ratio: 2.922096e-03	ci left: 3.077248e-01	ci right 3.086255e-01	k: 1245027	n:4040000
KS ci ratio: 5.147175e-01	ci left: 1.068597e-05	ci right 1.827969e-05	k: 57	n:4040000
GPR158   4040000 perm   6952 sec   (581 perm/sec)   p_kst 1.410891e-05   p_cons 3.081750e-01   p_joint 5.940594e-05

Joint ci ratio: 2.519796e-01	ci left: 5.223009e-05	ci right 6.751225e-05	k: 241	n:4050000
Cons ci ratio: 2.918469e-03	ci left: 3.077278e-01	ci right 3.086275e-01	k: 1248119	n:4050000
KS ci ratio: 5.147175e-01	ci left: 1.065958e-05	ci right 1.823456e-05	k: 57	n:4050000
GPR158   4050000 perm   6982 sec   (580 perm/sec)   p_kst 1.407407e-05   p_cons 3.081775e-01   p_joint 5.950617e-05

Joint ci ratio: 2.519796e-01	ci left: 5.210144e-05	ci right 6.734597e-05	k: 241	n:4060000
Cons ci ratio: 2.914864e-03	ci left: 3.077297e-01	ci right 3.086282e-01	k: 1251206	n:4060000
KS ci ratio: 5.147175e-01	ci left: 1.063333e-05	ci right 1.818964e-05	k: 57	n:4060000
GPR158   4060000 perm   7013 sec   (579 perm/sec)   p_kst 1.403941e-05   p_cons 3.081788e-01   p_joint 5.935961e-05

Joint ci ratio: 2.514606e-01	ci left: 5.220363e-05	ci right 6.744166e-05	k: 242	n:4070000
Cons ci ratio: 2.911272e-03	ci left: 3.077315e-01	ci right 3.086289e-01	k: 1254293	n:4070000
KS ci ratio: 5.103368e-01	ci left: 1.082111e-05	ci right 1.842219e-05	k: 58	n:4070000
GPR158   4070000 perm   7043 sec   (578 perm/sec)   p_kst 1.425061e-05   p_cons 3.081801e-01   p_joint 5.945946e-05

Joint ci ratio: 2.509447e-01	ci left: 5.230535e-05	ci right 6.753686e-05	k: 243	n:4080000
Cons ci ratio: 2.907736e-03	ci left: 3.077272e-01	ci right 3.086235e-01	k: 1257355	n:4080000
KS ci ratio: 5.103368e-01	ci left: 1.079458e-05	ci right 1.837703e-05	k: 58	n:4080000
GPR158   4080000 perm   7073 sec   (577 perm/sec)   p_kst 1.421569e-05   p_cons 3.081752e-01   p_joint 5.955882e-05

Joint ci ratio: 2.504321e-01	ci left: 5.240660e-05	ci right 6.763156e-05	k: 244	n:4090000
Cons ci ratio: 2.904300e-03	ci left: 3.077100e-01	ci right 3.086052e-01	k: 1260364	n:4090000
KS ci ratio: 5.103368e-01	ci left: 1.076819e-05	ci right 1.833210e-05	k: 58	n:4090000
GPR158   4090000 perm   7104 sec   (576 perm/sec)   p_kst 1.418093e-05   p_cons 3.081575e-01   p_joint 5.965770e-05

Joint ci ratio: 2.504321e-01	ci left: 5.227878e-05	ci right 6.746661e-05	k: 244	n:4100000
Cons ci ratio: 2.900838e-03	ci left: 3.076984e-01	ci right 3.085926e-01	k: 1263396	n:4100000
KS ci ratio: 5.103368e-01	ci left: 1.074193e-05	ci right 1.828739e-05	k: 58	n:4100000
GPR158   4100000 perm   7134 sec   (575 perm/sec)   p_kst 1.414634e-05   p_cons 3.081454e-01   p_joint 5.951220e-05

Joint ci ratio: 2.499226e-01	ci left: 5.237964e-05	ci right 6.756099e-05	k: 245	n:4110000
Cons ci ratio: 2.897298e-03	ci left: 3.077003e-01	ci right 3.085934e-01	k: 1266483	n:4110000
KS ci ratio: 5.103368e-01	ci left: 1.071579e-05	ci right 1.824289e-05	k: 58	n:4110000
GPR158   4110000 perm   7165 sec   (574 perm/sec)   p_kst 1.411192e-05   p_cons 3.081467e-01   p_joint 5.961071e-05

Joint ci ratio: 2.499226e-01	ci left: 5.225250e-05	ci right 6.739700e-05	k: 245	n:4120000
Cons ci ratio: 2.893670e-03	ci left: 3.077170e-01	ci right 3.086090e-01	k: 1269631	n:4120000
KS ci ratio: 5.103368e-01	ci left: 1.068978e-05	ci right 1.819862e-05	k: 58	n:4120000
GPR158   4120000 perm   7196 sec   (573 perm/sec)   p_kst 1.407767e-05   p_cons 3.081629e-01   p_joint 5.946602e-05

Joint ci ratio: 2.499226e-01	ci left: 5.212598e-05	ci right 6.723382e-05	k: 245	n:4130000
Cons ci ratio: 2.890254e-03	ci left: 3.077043e-01	ci right 3.085952e-01	k: 1272658	n:4130000
KS ci ratio: 5.103368e-01	ci left: 1.066390e-05	ci right 1.815455e-05	k: 58	n:4130000
GPR158   4130000 perm   7227 sec   (571 perm/sec)   p_kst 1.404358e-05   p_cons 3.081496e-01   p_joint 5.932203e-05

Joint ci ratio: 2.499226e-01	ci left: 5.200007e-05	ci right 6.707142e-05	k: 245	n:4140000
Cons ci ratio: 2.886906e-03	ci left: 3.076835e-01	ci right 3.085733e-01	k: 1275651	n:4140000
KS ci ratio: 5.103368e-01	ci left: 1.063814e-05	ci right 1.811070e-05	k: 58	n:4140000
GPR158   4140000 perm   7258 sec   (570 perm/sec)   p_kst 1.400966e-05   p_cons 3.081283e-01   p_joint 5.917874e-05

Joint ci ratio: 2.489128e-01	ci left: 5.232658e-05	ci right 6.742178e-05	k: 247	n:4150000
Cons ci ratio: 2.883342e-03	ci left: 3.076965e-01	ci right 3.085852e-01	k: 1278784	n:4150000
KS ci ratio: 5.019008e-01	ci left: 1.103287e-05	ci right 1.861006e-05	k: 60	n:4150000
GPR158   4150000 perm   7289 sec   (569 perm/sec)   p_kst 1.445783e-05   p_cons 3.081407e-01   p_joint 5.951807e-05

Joint ci ratio: 2.489128e-01	ci left: 5.220080e-05	ci right 6.725971e-05	k: 247	n:4160000
Cons ci ratio: 2.879800e-03	ci left: 3.077080e-01	ci right 3.085956e-01	k: 1281911	n:4160000
KS ci ratio: 5.019008e-01	ci left: 1.100634e-05	ci right 1.856532e-05	k: 60	n:4160000
GPR158   4160000 perm   7320 sec   (568 perm/sec)   p_kst 1.442308e-05   p_cons 3.081517e-01   p_joint 5.937500e-05

Joint ci ratio: 2.484125e-01	ci left: 5.230048e-05	ci right 6.735314e-05	k: 248	n:4170000
Cons ci ratio: 2.876304e-03	ci left: 3.077146e-01	ci right 3.086012e-01	k: 1285018	n:4170000
KS ci ratio: 5.019008e-01	ci left: 1.097995e-05	ci right 1.852080e-05	k: 60	n:4170000
GPR158   4170000 perm   7351 sec   (567 perm/sec)   p_kst 1.438849e-05   p_cons 3.081578e-01   p_joint 5.947242e-05

Joint ci ratio: 2.484125e-01	ci left: 5.217536e-05	ci right 6.719201e-05	k: 248	n:4180000
Cons ci ratio: 2.872860e-03	ci left: 3.077153e-01	ci right 3.086008e-01	k: 1288100	n:4180000
KS ci ratio: 5.019008e-01	ci left: 1.095368e-05	ci right 1.847649e-05	k: 60	n:4180000
GPR158   4180000 perm   7382 sec   (566 perm/sec)   p_kst 1.435407e-05   p_cons 3.081579e-01   p_joint 5.933014e-05

Joint ci ratio: 2.484125e-01	ci left: 5.205083e-05	ci right 6.703165e-05	k: 248	n:4190000
Cons ci ratio: 2.869388e-03	ci left: 3.077221e-01	ci right 3.086066e-01	k: 1291208	n:4190000
KS ci ratio: 5.019009e-01	ci left: 1.092754e-05	ci right 1.843239e-05	k: 60	n:4190000
GPR158   4190000 perm   7414 sec   (565 perm/sec)   p_kst 1.431981e-05   p_cons 3.081642e-01   p_joint 5.918854e-05

Joint ci ratio: 2.474208e-01	ci left: 5.237351e-05	ci right 6.737776e-05	k: 250	n:4200000
Cons ci ratio: 2.865883e-03	ci left: 3.077356e-01	ci right 3.086190e-01	k: 1294344	n:4200000
KS ci ratio: 5.019009e-01	ci left: 1.090152e-05	ci right 1.838851e-05	k: 60	n:4200000
GPR158   4200000 perm   7445 sec   (564 perm/sec)   p_kst 1.428571e-05   p_cons 3.081771e-01   p_joint 5.952381e-05

Joint ci ratio: 2.474208e-01	ci left: 5.224911e-05	ci right 6.721772e-05	k: 250	n:4210000
Cons ci ratio: 2.862494e-03	ci left: 3.077335e-01	ci right 3.086159e-01	k: 1297415	n:4210000
KS ci ratio: 5.019009e-01	ci left: 1.087563e-05	ci right 1.834483e-05	k: 60	n:4210000
GPR158   4210000 perm   7476 sec   (563 perm/sec)   p_kst 1.425178e-05   p_cons 3.081746e-01   p_joint 5.938242e-05

Joint ci ratio: 2.474208e-01	ci left: 5.212530e-05	ci right 6.705844e-05	k: 250	n:4220000
Cons ci ratio: 2.859202e-03	ci left: 3.077190e-01	ci right 3.086003e-01	k: 1300433	n:4220000
KS ci ratio: 5.019009e-01	ci left: 1.084986e-05	ci right 1.830136e-05	k: 60	n:4220000
GPR158   4220000 perm   7508 sec   (562 perm/sec)   p_kst 1.421801e-05   p_cons 3.081595e-01   p_joint 5.924171e-05

Joint ci ratio: 2.469294e-01	ci left: 5.222383e-05	ci right 6.715092e-05	k: 251	n:4230000
Cons ci ratio: 2.855872e-03	ci left: 3.077118e-01	ci right 3.085920e-01	k: 1303482	n:4230000
KS ci ratio: 4.978368e-01	ci left: 1.103079e-05	ci right 1.852409e-05	k: 61	n:4230000
GPR158   4230000 perm   7540 sec   (561 perm/sec)   p_kst 1.442080e-05   p_cons 3.081518e-01   p_joint 5.933806e-05

Joint ci ratio: 2.469294e-01	ci left: 5.210066e-05	ci right 6.699255e-05	k: 251	n:4240000
Cons ci ratio: 2.852561e-03	ci left: 3.077034e-01	ci right 3.085827e-01	k: 1306526	n:4240000
KS ci ratio: 4.978368e-01	ci left: 1.100477e-05	ci right 1.848040e-05	k: 61	n:4240000
GPR158   4240000 perm   7572 sec   (560 perm/sec)   p_kst 1.438679e-05   p_cons 3.081429e-01   p_joint 5.919811e-05

Joint ci ratio: 2.469294e-01	ci left: 5.197807e-05	ci right 6.683492e-05	k: 251	n:4250000
Cons ci ratio: 2.849146e-03	ci left: 3.077126e-01	ci right 3.085908e-01	k: 1309644	n:4250000
KS ci ratio: 4.978368e-01	ci left: 1.097888e-05	ci right 1.843692e-05	k: 61	n:4250000
GPR158   4250000 perm   7604 sec   (559 perm/sec)   p_kst 1.435294e-05   p_cons 3.081515e-01   p_joint 5.905882e-05

Joint ci ratio: 2.454725e-01	ci left: 5.251684e-05	ci right 6.742561e-05	k: 254	n:4260000
Cons ci ratio: 2.845832e-03	ci left: 3.077083e-01	ci right 3.085854e-01	k: 1312705	n:4260000
KS ci ratio: 4.938699e-01	ci left: 1.115848e-05	ci right 1.865752e-05	k: 62	n:4260000
GPR158   4260000 perm   7636 sec   (558 perm/sec)   p_kst 1.455399e-05   p_cons 3.081467e-01   p_joint 5.962441e-05

Joint ci ratio: 2.454726e-01	ci left: 5.239385e-05	ci right 6.726771e-05	k: 254	n:4270000
Cons ci ratio: 2.842467e-03	ci left: 3.077134e-01	ci right 3.085895e-01	k: 1315806	n:4270000
KS ci ratio: 4.938699e-01	ci left: 1.113235e-05	ci right 1.861383e-05	k: 62	n:4270000
GPR158   4270000 perm   7668 sec   (557 perm/sec)   p_kst 1.451991e-05   p_cons 3.081513e-01   p_joint 5.948478e-05

Joint ci ratio: 2.454726e-01	ci left: 5.227144e-05	ci right 6.711054e-05	k: 254	n:4280000
Cons ci ratio: 2.839206e-03	ci left: 3.077046e-01	ci right 3.085797e-01	k: 1318848	n:4280000
KS ci ratio: 4.938699e-01	ci left: 1.110634e-05	ci right 1.857034e-05	k: 62	n:4280000
GPR158   4280000 perm   7700 sec   (556 perm/sec)   p_kst 1.448598e-05   p_cons 3.081421e-01   p_joint 5.934579e-05

Joint ci ratio: 2.449927e-01	ci left: 5.236837e-05	ci right 6.720150e-05	k: 255	n:4290000
Cons ci ratio: 2.835983e-03	ci left: 3.076920e-01	ci right 3.085661e-01	k: 1321873	n:4290000
KS ci ratio: 4.938699e-01	ci left: 1.108045e-05	ci right 1.852705e-05	k: 62	n:4290000
GPR158   4290000 perm   7732 sec   (555 perm/sec)   p_kst 1.445221e-05   p_cons 3.081289e-01   p_joint 5.944056e-05

Joint ci ratio: 2.445155e-01	ci left: 5.246488e-05	ci right 6.729201e-05	k: 256	n:4300000
Cons ci ratio: 2.832680e-03	ci left: 3.076929e-01	ci right 3.085660e-01	k: 1324956	n:4300000
KS ci ratio: 4.938699e-01	ci left: 1.105468e-05	ci right 1.848396e-05	k: 62	n:4300000
GPR158   4300000 perm   7765 sec   (554 perm/sec)   p_kst 1.441860e-05   p_cons 3.081293e-01   p_joint 5.953488e-05

Joint ci ratio: 2.440412e-01	ci left: 5.256097e-05	ci right 6.738208e-05	k: 257	n:4310000
Cons ci ratio: 2.829370e-03	ci left: 3.076968e-01	ci right 3.085689e-01	k: 1328052	n:4310000
KS ci ratio: 4.899963e-01	ci left: 1.123225e-05	ci right 1.870167e-05	k: 63	n:4310000
GPR158   4310000 perm   7797 sec   (553 perm/sec)   p_kst 1.461717e-05   p_cons 3.081327e-01   p_joint 5.962877e-05

Joint ci ratio: 2.440412e-01	ci left: 5.243930e-05	ci right 6.722610e-05	k: 257	n:4320000
Cons ci ratio: 2.826101e-03	ci left: 3.076961e-01	ci right 3.085671e-01	k: 1331128	n:4320000
KS ci ratio: 4.899963e-01	ci left: 1.120625e-05	ci right 1.865838e-05	k: 63	n:4320000
GPR158   4320000 perm   7830 sec   (552 perm/sec)   p_kst 1.458333e-05   p_cons 3.081315e-01   p_joint 5.949074e-05

Joint ci ratio: 2.435696e-01	ci left: 5.253503e-05	ci right 6.731587e-05	k: 258	n:4330000
Cons ci ratio: 2.822919e-03	ci left: 3.076841e-01	ci right 3.085541e-01	k: 1334155	n:4330000
KS ci ratio: 4.862125e-01	ci left: 1.138288e-05	ci right 1.887446e-05	k: 64	n:4330000
GPR158   4330000 perm   7862 sec   (551 perm/sec)   p_kst 1.478060e-05   p_cons 3.081189e-01   p_joint 5.958430e-05

Joint ci ratio: 2.431008e-01	ci left: 5.263035e-05	ci right 6.740520e-05	k: 259	n:4340000
Cons ci ratio: 2.819811e-03	ci left: 3.076624e-01	ci right 3.085314e-01	k: 1337140	n:4340000
KS ci ratio: 4.825149e-01	ci left: 1.155892e-05	ci right 1.908932e-05	k: 65	n:4340000
GPR158   4340000 perm   7895 sec   (550 perm/sec)   p_kst 1.497696e-05   p_cons 3.080968e-01   p_joint 5.967742e-05

Joint ci ratio: 2.426346e-01	ci left: 5.272525e-05	ci right 6.749409e-05	k: 260	n:4350000
Cons ci ratio: 2.816445e-03	ci left: 3.076815e-01	ci right 3.085495e-01	k: 1340302	n:4350000
KS ci ratio: 4.789005e-01	ci left: 1.173436e-05	ci right 1.930299e-05	k: 66	n:4350000
GPR158   4350000 perm   7927 sec   (549 perm/sec)   p_kst 1.517241e-05   p_cons 3.081154e-01   p_joint 5.977011e-05

Joint ci ratio: 2.426346e-01	ci left: 5.260433e-05	ci right 6.733929e-05	k: 260	n:4360000
Cons ci ratio: 2.813218e-03	ci left: 3.076813e-01	ci right 3.085483e-01	k: 1343380	n:4360000
KS ci ratio: 4.789005e-01	ci left: 1.170745e-05	ci right 1.925872e-05	k: 66	n:4360000
GPR158   4360000 perm   7960 sec   (548 perm/sec)   p_kst 1.513761e-05   p_cons 3.081147e-01   p_joint 5.963303e-05

Joint ci ratio: 2.426346e-01	ci left: 5.248395e-05	ci right 6.718520e-05	k: 260	n:4370000
Cons ci ratio: 2.809941e-03	ci left: 3.076905e-01	ci right 3.085565e-01	k: 1346499	n:4370000
KS ci ratio: 4.789005e-01	ci left: 1.168066e-05	ci right 1.921465e-05	k: 66	n:4370000
GPR158   4370000 perm   7992 sec   (547 perm/sec)   p_kst 1.510297e-05   p_cons 3.081233e-01   p_joint 5.949657e-05

Joint ci ratio: 2.417103e-01	ci left: 5.279304e-05	ci right 6.751608e-05	k: 262	n:4380000
Cons ci ratio: 2.806715e-03	ci left: 3.076934e-01	ci right 3.085584e-01	k: 1349591	n:4380000
KS ci ratio: 4.753661e-01	ci left: 1.185483e-05	ci right 1.942636e-05	k: 67	n:4380000
GPR158   4380000 perm   8025 sec   (546 perm/sec)   p_kst 1.529680e-05   p_cons 3.081258e-01   p_joint 5.981735e-05

Joint ci ratio: 2.412520e-01	ci left: 5.288679e-05	ci right 6.760383e-05	k: 263	n:4390000
Cons ci ratio: 2.803562e-03	ci left: 3.076870e-01	ci right 3.085511e-01	k: 1352642	n:4390000
KS ci ratio: 4.753661e-01	ci left: 1.182783e-05	ci right 1.938211e-05	k: 67	n:4390000
GPR158   4390000 perm   8058 sec   (545 perm/sec)   p_kst 1.526196e-05   p_cons 3.081189e-01   p_joint 5.990888e-05

Joint ci ratio: 2.412521e-01	ci left: 5.276659e-05	ci right 6.745019e-05	k: 263	n:4400000
Cons ci ratio: 2.800295e-03	ci left: 3.076995e-01	ci right 3.085626e-01	k: 1355776	n:4400000
KS ci ratio: 4.753661e-01	ci left: 1.180095e-05	ci right 1.933806e-05	k: 67	n:4400000
GPR158   4400000 perm   8091 sec   (544 perm/sec)   p_kst 1.522727e-05   p_cons 3.081309e-01   p_joint 5.977273e-05

Joint ci ratio: 2.412521e-01	ci left: 5.264694e-05	ci right 6.729724e-05	k: 263	n:4410000
Cons ci ratio: 2.797123e-03	ci left: 3.076992e-01	ci right 3.085613e-01	k: 1358854	n:4410000
KS ci ratio: 4.753661e-01	ci left: 1.177419e-05	ci right 1.929421e-05	k: 67	n:4410000
GPR158   4410000 perm   8123 sec   (543 perm/sec)   p_kst 1.519274e-05   p_cons 3.081302e-01   p_joint 5.963719e-05

Joint ci ratio: 2.519802e-01	ci left: 4.785787e-05	ci right 6.186079e-05	k: 241	n:4420000
Cons ci ratio: 2.793968e-03	ci left: 3.076981e-01	ci right 3.085592e-01	k: 1361928	n:4420000
KS ci ratio: 4.753661e-01	ci left: 1.174755e-05	ci right 1.925056e-05	k: 67	n:4420000
GPR158   4420000 perm   8156 sec   (542 perm/sec)   p_kst 1.515837e-05   p_cons 3.081285e-01   p_joint 5.452489e-05

Joint ci ratio: 2.519802e-01	ci left: 4.774984e-05	ci right 6.172115e-05	k: 241	n:4430000
Cons ci ratio: 2.790828e-03	ci left: 3.076962e-01	ci right 3.085564e-01	k: 1364999	n:4430000
KS ci ratio: 4.753661e-01	ci left: 1.172103e-05	ci right 1.920710e-05	k: 67	n:4430000
GPR158   4430000 perm   8189 sec   (541 perm/sec)   p_kst 1.512415e-05   p_cons 3.081262e-01   p_joint 5.440181e-05

Joint ci ratio: 2.514612e-01	ci left: 4.785331e-05	ci right 6.182155e-05	k: 242	n:4440000
Cons ci ratio: 2.787528e-03	ci left: 3.077205e-01	ci right 3.085797e-01	k: 1368186	n:4440000
KS ci ratio: 4.753661e-01	ci left: 1.169463e-05	ci right 1.916384e-05	k: 67	n:4440000
GPR158   4440000 perm   8222 sec   (540 perm/sec)   p_kst 1.509009e-05   p_cons 3.081500e-01   p_joint 5.450450e-05

Joint ci ratio: 2.514612e-01	ci left: 4.774578e-05	ci right 6.168262e-05	k: 242	n:4450000
Cons ci ratio: 2.784405e-03	ci left: 3.077193e-01	ci right 3.085775e-01	k: 1371260	n:4450000
KS ci ratio: 4.753661e-01	ci left: 1.166835e-05	ci right 1.912078e-05	k: 67	n:4450000
GPR158   4450000 perm   8256 sec   (539 perm/sec)   p_kst 1.505618e-05   p_cons 3.081483e-01   p_joint 5.438202e-05

Joint ci ratio: 2.514612e-01	ci left: 4.763872e-05	ci right 6.154432e-05	k: 242	n:4460000
Cons ci ratio: 2.781451e-03	ci left: 3.076939e-01	ci right 3.085512e-01	k: 1374226	n:4460000
KS ci ratio: 4.753661e-01	ci left: 1.164219e-05	ci right 1.907791e-05	k: 67	n:4460000
GPR158   4460000 perm   8289 sec   (538 perm/sec)   p_kst 1.502242e-05   p_cons 3.081224e-01   p_joint 5.426009e-05

Joint ci ratio: 2.514613e-01	ci left: 4.753215e-05	ci right 6.140664e-05	k: 242	n:4470000
Cons ci ratio: 2.778373e-03	ci left: 3.076890e-01	ci right 3.085453e-01	k: 1377283	n:4470000
KS ci ratio: 4.753662e-01	ci left: 1.161614e-05	ci right 1.903523e-05	k: 67	n:4470000
GPR158   4470000 perm   8322 sec   (537 perm/sec)   p_kst 1.498881e-05   p_cons 3.081170e-01   p_joint 5.413870e-05

Joint ci ratio: 2.514613e-01	ci left: 4.742605e-05	ci right 6.126957e-05	k: 242	n:4480000
Cons ci ratio: 2.775224e-03	ci left: 3.076966e-01	ci right 3.085519e-01	k: 1380396	n:4480000
KS ci ratio: 4.753662e-01	ci left: 1.159021e-05	ci right 1.899274e-05	k: 67	n:4480000
GPR158   4480000 perm   8356 sec   (536 perm/sec)   p_kst 1.495536e-05   p_cons 3.081241e-01   p_joint 5.401786e-05

Joint ci ratio: 2.514613e-01	ci left: 4.732042e-05	ci right 6.113311e-05	k: 242	n:4490000
Cons ci ratio: 2.772240e-03	ci left: 3.076805e-01	ci right 3.085349e-01	k: 1383403	n:4490000
KS ci ratio: 4.753662e-01	ci left: 1.156440e-05	ci right 1.895044e-05	k: 67	n:4490000
GPR158   4490000 perm   8389 sec   (535 perm/sec)   p_kst 1.492205e-05   p_cons 3.081076e-01   p_joint 5.389755e-05

Joint ci ratio: 2.514613e-01	ci left: 4.721527e-05	ci right 6.099726e-05	k: 242	n:4500000
Cons ci ratio: 2.769218e-03	ci left: 3.076716e-01	ci right 3.085250e-01	k: 1386442	n:4500000
KS ci ratio: 4.753662e-01	ci left: 1.153870e-05	ci right 1.890832e-05	k: 67	n:4500000
GPR158   4500000 perm   8422 sec   (534 perm/sec)   p_kst 1.488889e-05   p_cons 3.080982e-01   p_joint 5.377778e-05

Joint ci ratio: 2.514613e-01	ci left: 4.711058e-05	ci right 6.086201e-05	k: 242	n:4510000
Cons ci ratio: 2.766292e-03	ci left: 3.076497e-01	ci right 3.085022e-01	k: 1389422	n:4510000
KS ci ratio: 4.753662e-01	ci left: 1.151312e-05	ci right 1.886640e-05	k: 67	n:4510000
GPR158   4510000 perm   8456 sec   (533 perm/sec)   p_kst 1.485588e-05   p_cons 3.080758e-01   p_joint 5.365854e-05

Joint ci ratio: 2.509455e-01	ci left: 4.721366e-05	ci right 6.096250e-05	k: 243	n:4520000
Cons ci ratio: 2.763332e-03	ci left: 3.076346e-01	ci right 3.084860e-01	k: 1392432	n:4520000
KS ci ratio: 4.753662e-01	ci left: 1.148765e-05	ci right 1.882466e-05	k: 67	n:4520000
GPR158   4520000 perm   8490 sec   (532 perm/sec)   p_kst 1.482301e-05   p_cons 3.080602e-01   p_joint 5.376106e-05

Joint ci ratio: 2.504328e-01	ci left: 4.731632e-05	ci right 6.106251e-05	k: 244	n:4530000
Cons ci ratio: 2.760166e-03	ci left: 3.076526e-01	ci right 3.085031e-01	k: 1395592	n:4530000
KS ci ratio: 4.753662e-01	ci left: 1.146229e-05	ci right 1.878310e-05	k: 67	n:4530000
GPR158   4530000 perm   8524 sec   (531 perm/sec)   p_kst 1.479029e-05   p_cons 3.080777e-01   p_joint 5.386313e-05

Joint ci ratio: 2.504328e-01	ci left: 4.721210e-05	ci right 6.092802e-05	k: 244	n:4540000
Cons ci ratio: 2.757162e-03	ci left: 3.076473e-01	ci right 3.084970e-01	k: 1398647	n:4540000
KS ci ratio: 4.753662e-01	ci left: 1.143704e-05	ci right 1.874173e-05	k: 67	n:4540000
GPR158   4540000 perm   8558 sec   (531 perm/sec)   p_kst 1.475771e-05   p_cons 3.080720e-01   p_joint 5.374449e-05

Joint ci ratio: 2.499233e-01	ci left: 4.731434e-05	ci right 6.102764e-05	k: 245	n:4550000
Cons ci ratio: 2.754059e-03	ci left: 3.076589e-01	ci right 3.085075e-01	k: 1401778	n:4550000
KS ci ratio: 4.719089e-01	ci left: 1.160544e-05	ci right 1.894638e-05	k: 68	n:4550000
GPR158   4550000 perm   8592 sec   (530 perm/sec)   p_kst 1.494505e-05   p_cons 3.080831e-01   p_joint 5.384615e-05

Joint ci ratio: 2.499233e-01	ci left: 4.721058e-05	ci right 6.089381e-05	k: 245	n:4560000
Cons ci ratio: 2.751051e-03	ci left: 3.076572e-01	ci right 3.085049e-01	k: 1404849	n:4560000
KS ci ratio: 4.719089e-01	ci left: 1.157999e-05	ci right 1.890483e-05	k: 68	n:4560000
GPR158   4560000 perm   8626 sec   (529 perm/sec)   p_kst 1.491228e-05   p_cons 3.080809e-01   p_joint 5.372807e-05

Joint ci ratio: 2.499233e-01	ci left: 4.710727e-05	ci right 6.076056e-05	k: 245	n:4570000
Cons ci ratio: 2.748077e-03	ci left: 3.076518e-01	ci right 3.084986e-01	k: 1407903	n:4570000
KS ci ratio: 4.719089e-01	ci left: 1.155465e-05	ci right 1.886346e-05	k: 68	n:4570000
GPR158   4570000 perm   8660 sec   (528 perm/sec)   p_kst 1.487965e-05   p_cons 3.080751e-01   p_joint 5.361050e-05

Joint ci ratio: 2.489135e-01	ci left: 4.741381e-05	ci right 6.109181e-05	k: 247	n:4580000
Cons ci ratio: 2.745026e-03	ci left: 3.076599e-01	ci right 3.085058e-01	k: 1411019	n:4580000
KS ci ratio: 4.719089e-01	ci left: 1.152942e-05	ci right 1.882228e-05	k: 68	n:4580000
GPR158   4580000 perm   8694 sec   (527 perm/sec)   p_kst 1.484716e-05   p_cons 3.080828e-01   p_joint 5.393013e-05

Joint ci ratio: 2.489135e-01	ci left: 4.731051e-05	ci right 6.095872e-05	k: 247	n:4590000
Cons ci ratio: 2.741957e-03	ci left: 3.076724e-01	ci right 3.085174e-01	k: 1414155	n:4590000
KS ci ratio: 4.719089e-01	ci left: 1.150430e-05	ci right 1.878127e-05	k: 68	n:4590000
GPR158   4590000 perm   8728 sec   (526 perm/sec)   p_kst 1.481481e-05   p_cons 3.080948e-01   p_joint 5.381264e-05

Joint ci ratio: 2.484132e-01	ci left: 4.741151e-05	ci right 6.105711e-05	k: 248	n:4600000
Cons ci ratio: 2.738941e-03	ci left: 3.076781e-01	ci right 3.085222e-01	k: 1417260	n:4600000
KS ci ratio: 4.719090e-01	ci left: 1.147929e-05	ci right 1.874044e-05	k: 68	n:4600000
GPR158   4600000 perm   8762 sec   (525 perm/sec)   p_kst 1.478261e-05   p_cons 3.081000e-01   p_joint 5.391304e-05

Joint ci ratio: 2.479158e-01	ci left: 4.751209e-05	ci right 6.115505e-05	k: 249	n:4610000
Cons ci ratio: 2.735971e-03	ci left: 3.076783e-01	ci right 3.085215e-01	k: 1420340	n:4610000
KS ci ratio: 4.685260e-01	ci left: 1.164560e-05	ci right 1.894224e-05	k: 69	n:4610000
GPR158   4610000 perm   8796 sec   (524 perm/sec)   p_kst 1.496746e-05   p_cons 3.080998e-01   p_joint 5.401302e-05

Joint ci ratio: 2.469300e-01	ci left: 4.781531e-05	ci right 6.148236e-05	k: 251	n:4620000
Cons ci ratio: 2.732884e-03	ci left: 3.076980e-01	ci right 3.085403e-01	k: 1423510	n:4620000
KS ci ratio: 4.685260e-01	ci left: 1.162039e-05	ci right 1.890124e-05	k: 69	n:4620000
GPR158   4620000 perm   8831 sec   (523 perm/sec)   p_kst 1.493506e-05   p_cons 3.081190e-01   p_joint 5.432900e-05

Joint ci ratio: 2.469300e-01	ci left: 4.771204e-05	ci right 6.134957e-05	k: 251	n:4630000
Cons ci ratio: 2.730015e-03	ci left: 3.076855e-01	ci right 3.085268e-01	k: 1426531	n:4630000
KS ci ratio: 4.685260e-01	ci left: 1.159529e-05	ci right 1.886042e-05	k: 69	n:4630000
GPR158   4630000 perm   8865 sec   (522 perm/sec)   p_kst 1.490281e-05   p_cons 3.081060e-01   p_joint 5.421166e-05

Joint ci ratio: 2.469301e-01	ci left: 4.760921e-05	ci right 6.121735e-05	k: 251	n:4640000
Cons ci ratio: 2.727048e-03	ci left: 3.076896e-01	ci right 3.085300e-01	k: 1429629	n:4640000
KS ci ratio: 4.685260e-01	ci left: 1.157030e-05	ci right 1.881977e-05	k: 69	n:4640000
GPR158   4640000 perm   8899 sec   (521 perm/sec)   p_kst 1.487069e-05   p_cons 3.081097e-01   p_joint 5.409483e-05

Joint ci ratio: 2.469301e-01	ci left: 4.750683e-05	ci right 6.108570e-05	k: 251	n:4650000
Cons ci ratio: 2.724140e-03	ci left: 3.076859e-01	ci right 3.085255e-01	k: 1432691	n:4650000
KS ci ratio: 4.685260e-01	ci left: 1.154542e-05	ci right 1.877930e-05	k: 69	n:4650000
GPR158   4650000 perm   8934 sec   (520 perm/sec)   p_kst 1.483871e-05   p_cons 3.081056e-01   p_joint 5.397849e-05

Joint ci ratio: 2.484132e-01	ci left: 4.680106e-05	ci right 6.027097e-05	k: 248	n:4660000
Cons ci ratio: 2.721213e-03	ci left: 3.076868e-01	ci right 3.085254e-01	k: 1435774	n:4660000
KS ci ratio: 4.685260e-01	ci left: 1.152064e-05	ci right 1.873900e-05	k: 69	n:4660000
GPR158   4660000 perm   8969 sec   (520 perm/sec)   p_kst 1.480687e-05   p_cons 3.081060e-01   p_joint 5.321888e-05

Joint ci ratio: 2.596020e-01	ci left: 4.249015e-05	ci right 5.535962e-05	k: 227	n:4670000
Cons ci ratio: 2.718249e-03	ci left: 3.076950e-01	ci right 3.085327e-01	k: 1438891	n:4670000
KS ci ratio: 4.652148e-01	ci left: 1.168491e-05	ci right 1.893803e-05	k: 70	n:4670000
GPR158   4670000 perm   9004 sec   (519 perm/sec)   p_kst 1.498929e-05   p_cons 3.081137e-01   p_joint 4.860814e-05

Joint ci ratio: 2.596020e-01	ci left: 4.239936e-05	ci right 5.524133e-05	k: 227	n:4680000
Cons ci ratio: 2.715331e-03	ci left: 3.076973e-01	ci right 3.085341e-01	k: 1441981	n:4680000
KS ci ratio: 4.652148e-01	ci left: 1.165994e-05	ci right 1.889757e-05	k: 70	n:4680000
GPR158   4680000 perm   9039 sec   (518 perm/sec)   p_kst 1.495726e-05   p_cons 3.081156e-01   p_joint 4.850427e-05

Joint ci ratio: 2.596020e-01	ci left: 4.230896e-05	ci right 5.512354e-05	k: 227	n:4690000
Cons ci ratio: 2.712504e-03	ci left: 3.076868e-01	ci right 3.085228e-01	k: 1445011	n:4690000
KS ci ratio: 4.652148e-01	ci left: 1.163508e-05	ci right 1.885727e-05	k: 70	n:4690000
GPR158   4690000 perm   9074 sec   (517 perm/sec)   p_kst 1.492537e-05   p_cons 3.081047e-01   p_joint 4.840085e-05

Joint ci ratio: 2.596020e-01	ci left: 4.221894e-05	ci right 5.500626e-05	k: 227	n:4700000
Cons ci ratio: 2.709555e-03	ci left: 3.076971e-01	ci right 3.085321e-01	k: 1448138	n:4700000
KS ci ratio: 4.652148e-01	ci left: 1.161032e-05	ci right 1.881715e-05	k: 70	n:4700000
GPR158   4700000 perm   9108 sec   (516 perm/sec)   p_kst 1.489362e-05   p_cons 3.081145e-01   p_joint 4.829787e-05

Joint ci ratio: 2.590346e-01	ci left: 4.232782e-05	ci right 5.511556e-05	k: 228	n:4710000
Cons ci ratio: 2.706657e-03	ci left: 3.077007e-01	ci right 3.085348e-01	k: 1451234	n:4710000
KS ci ratio: 4.652149e-01	ci left: 1.158567e-05	ci right 1.877720e-05	k: 70	n:4710000
GPR158   4710000 perm   9144 sec   (515 perm/sec)   p_kst 1.486200e-05   p_cons 3.081176e-01   p_joint 4.840764e-05

Joint ci ratio: 2.584708e-01	ci left: 4.243626e-05	ci right 5.522436e-05	k: 229	n:4720000
Cons ci ratio: 2.703867e-03	ci left: 3.076888e-01	ci right 3.085221e-01	k: 1454257	n:4720000
KS ci ratio: 4.652149e-01	ci left: 1.156113e-05	ci right 1.873742e-05	k: 70	n:4720000
GPR158   4720000 perm   9179 sec   (514 perm/sec)   p_kst 1.483051e-05   p_cons 3.081053e-01   p_joint 4.851695e-05

Joint ci ratio: 2.579107e-01	ci left: 4.254428e-05	ci right 5.533267e-05	k: 230	n:4730000
Cons ci ratio: 2.700996e-03	ci left: 3.076909e-01	ci right 3.085233e-01	k: 1457346	n:4730000
KS ci ratio: 4.652149e-01	ci left: 1.153668e-05	ci right 1.869780e-05	k: 70	n:4730000
GPR158   4730000 perm   9215 sec   (513 perm/sec)   p_kst 1.479915e-05   p_cons 3.081070e-01   p_joint 4.862579e-05

Joint ci ratio: 2.579108e-01	ci left: 4.245453e-05	ci right 5.521594e-05	k: 230	n:4740000
Cons ci ratio: 2.698088e-03	ci left: 3.077004e-01	ci right 3.085319e-01	k: 1460470	n:4740000
KS ci ratio: 4.652149e-01	ci left: 1.151235e-05	ci right 1.865836e-05	k: 70	n:4740000
GPR158   4740000 perm   9250 sec   (512 perm/sec)   p_kst 1.476793e-05   p_cons 3.081160e-01   p_joint 4.852321e-05

Joint ci ratio: 2.573543e-01	ci left: 4.256208e-05	ci right 5.532379e-05	k: 231	n:4750000
Cons ci ratio: 2.695146e-03	ci left: 3.077168e-01	ci right 3.085474e-01	k: 1463627	n:4750000
KS ci ratio: 4.652149e-01	ci left: 1.148811e-05	ci right 1.861908e-05	k: 70	n:4750000
GPR158   4750000 perm   9286 sec   (512 perm/sec)   p_kst 1.473684e-05   p_cons 3.081320e-01   p_joint 4.863158e-05

Joint ci ratio: 2.568014e-01	ci left: 4.266921e-05	ci right 5.543115e-05	k: 232	n:4760000
Cons ci ratio: 2.692216e-03	ci left: 3.077327e-01	ci right 3.085625e-01	k: 1466782	n:4760000
KS ci ratio: 4.652149e-01	ci left: 1.146397e-05	ci right 1.857996e-05	k: 70	n:4760000
GPR158   4760000 perm   9321 sec   (511 perm/sec)   p_kst 1.470588e-05   p_cons 3.081475e-01   p_joint 4.873950e-05

Joint ci ratio: 2.568014e-01	ci left: 4.257976e-05	ci right 5.531494e-05	k: 232	n:4770000
Cons ci ratio: 2.689414e-03	ci left: 3.077297e-01	ci right 3.085586e-01	k: 1469847	n:4770000
KS ci ratio: 4.652149e-01	ci left: 1.143994e-05	ci right 1.854101e-05	k: 70	n:4770000
GPR158   4770000 perm   9357 sec   (510 perm/sec)   p_kst 1.467505e-05   p_cons 3.081440e-01   p_joint 4.863732e-05

Joint ci ratio: 2.568015e-01	ci left: 4.249068e-05	ci right 5.519922e-05	k: 232	n:4780000
Cons ci ratio: 2.686564e-03	ci left: 3.077357e-01	ci right 3.085637e-01	k: 1472955	n:4780000
KS ci ratio: 4.652149e-01	ci left: 1.141601e-05	ci right 1.850222e-05	k: 70	n:4780000
GPR158   4780000 perm   9392 sec   (509 perm/sec)   p_kst 1.464435e-05   p_cons 3.081496e-01   p_joint 4.853556e-05

Joint ci ratio: 2.568015e-01	ci left: 4.240197e-05	ci right 5.508398e-05	k: 232	n:4790000
Cons ci ratio: 2.683869e-03	ci left: 3.077185e-01	ci right 3.085456e-01	k: 1475952	n:4790000
KS ci ratio: 4.652149e-01	ci left: 1.139217e-05	ci right 1.846359e-05	k: 70	n:4790000
GPR158   4790000 perm   9427 sec   (508 perm/sec)   p_kst 1.461378e-05   p_cons 3.081319e-01   p_joint 4.843424e-05

Joint ci ratio: 2.562521e-01	ci left: 4.250857e-05	ci right 5.519092e-05	k: 233	n:4800000
Cons ci ratio: 2.681187e-03	ci left: 3.077007e-01	ci right 3.085270e-01	k: 1478946	n:4800000
KS ci ratio: 4.652149e-01	ci left: 1.136844e-05	ci right 1.842513e-05	k: 70	n:4800000
GPR158   4800000 perm   9463 sec   (507 perm/sec)   p_kst 1.458333e-05   p_cons 3.081138e-01   p_joint 4.854167e-05

Joint ci ratio: 2.562522e-01	ci left: 4.242020e-05	ci right 5.507618e-05	k: 233	n:4810000
Cons ci ratio: 2.678469e-03	ci left: 3.076899e-01	ci right 3.085153e-01	k: 1481973	n:4810000
KS ci ratio: 4.652149e-01	ci left: 1.134481e-05	ci right 1.838682e-05	k: 70	n:4810000
GPR158   4810000 perm   9499 sec   (506 perm/sec)   p_kst 1.455301e-05   p_cons 3.081025e-01   p_joint 4.844075e-05

Joint ci ratio: 2.551640e-01	ci left: 4.272054e-05	ci right 5.540339e-05	k: 235	n:4820000
Cons ci ratio: 2.675658e-03	ci left: 3.076953e-01	ci right 3.085199e-01	k: 1485078	n:4820000
KS ci ratio: 4.652149e-01	ci left: 1.132127e-05	ci right 1.834868e-05	k: 70	n:4820000
GPR158   4820000 perm   9535 sec   (506 perm/sec)   p_kst 1.452282e-05   p_cons 3.081075e-01   p_joint 4.875519e-05

Joint ci ratio: 2.551640e-01	ci left: 4.263209e-05	ci right 5.528868e-05	k: 235	n:4830000
Cons ci ratio: 2.672932e-03	ci left: 3.076885e-01	ci right 3.085122e-01	k: 1488124	n:4830000
KS ci ratio: 4.652149e-01	ci left: 1.129783e-05	ci right 1.831069e-05	k: 70	n:4830000
GPR158   4830000 perm   9571 sec   (505 perm/sec)   p_kst 1.449275e-05   p_cons 3.081002e-01   p_joint 4.865424e-05

Joint ci ratio: 2.546251e-01	ci left: 4.273742e-05	ci right 5.539423e-05	k: 236	n:4840000
Cons ci ratio: 2.670262e-03	ci left: 3.076740e-01	ci right 3.084969e-01	k: 1491133	n:4840000
KS ci ratio: 4.652149e-01	ci left: 1.127449e-05	ci right 1.827286e-05	k: 70	n:4840000
GPR158   4840000 perm   9607 sec   (504 perm/sec)   p_kst 1.446281e-05   p_cons 3.080853e-01   p_joint 4.876033e-05

Joint ci ratio: 2.546251e-01	ci left: 4.264930e-05	ci right 5.528002e-05	k: 236	n:4850000
Cons ci ratio: 2.667345e-03	ci left: 3.077004e-01	ci right 3.085225e-01	k: 1494340	n:4850000
KS ci ratio: 4.652150e-01	ci left: 1.125124e-05	ci right 1.823518e-05	k: 70	n:4850000
GPR158   4850000 perm   9643 sec   (503 perm/sec)   p_kst 1.443299e-05   p_cons 3.081113e-01   p_joint 4.865979e-05

Joint ci ratio: 2.546251e-01	ci left: 4.256155e-05	ci right 5.516627e-05	k: 236	n:4860000
Cons ci ratio: 2.664557e-03	ci left: 3.077076e-01	ci right 3.085288e-01	k: 1497454	n:4860000
KS ci ratio: 4.652150e-01	ci left: 1.122809e-05	ci right 1.819766e-05	k: 70	n:4860000
GPR158   4860000 perm   9679 sec   (502 perm/sec)   p_kst 1.440329e-05   p_cons 3.081181e-01   p_joint 4.855967e-05

Joint ci ratio: 2.540896e-01	ci left: 4.266640e-05	ci right 5.527139e-05	k: 237	n:4870000
Cons ci ratio: 2.661732e-03	ci left: 3.077222e-01	ci right 3.085425e-01	k: 1500604	n:4870000
KS ci ratio: 4.652150e-01	ci left: 1.120503e-05	ci right 1.816029e-05	k: 70	n:4870000
GPR158   4870000 perm   9715 sec   (501 perm/sec)   p_kst 1.437372e-05   p_cons 3.081322e-01   p_joint 4.866530e-05

Joint ci ratio: 2.530287e-01	ci left: 4.296276e-05	ci right 5.559396e-05	k: 239	n:4880000
Cons ci ratio: 2.659044e-03	ci left: 3.077162e-01	ci right 3.085357e-01	k: 1503654	n:4880000
KS ci ratio: 4.652150e-01	ci left: 1.118207e-05	ci right 1.812308e-05	k: 70	n:4880000
GPR158   4880000 perm   9752 sec   (500 perm/sec)   p_kst 1.434426e-05   p_cons 3.081258e-01   p_joint 4.897541e-05

Joint ci ratio: 2.530287e-01	ci left: 4.287490e-05	ci right 5.548027e-05	k: 239	n:4890000
Cons ci ratio: 2.656410e-03	ci left: 3.077026e-01	ci right 3.085213e-01	k: 1506667	n:4890000
KS ci ratio: 4.652150e-01	ci left: 1.115921e-05	ci right 1.808602e-05	k: 70	n:4890000
GPR158   4890000 perm   9788 sec   (500 perm/sec)   p_kst 1.431493e-05   p_cons 3.081119e-01   p_joint 4.887526e-05

Joint ci ratio: 2.530287e-01	ci left: 4.278740e-05	ci right 5.536704e-05	k: 239	n:4900000
Cons ci ratio: 2.653649e-03	ci left: 3.077110e-01	ci right 3.085288e-01	k: 1509787	n:4900000
KS ci ratio: 4.652150e-01	ci left: 1.113643e-05	ci right 1.804911e-05	k: 70	n:4900000
GPR158   4900000 perm   9824 sec   (499 perm/sec)   p_kst 1.428571e-05   p_cons 3.081198e-01   p_joint 4.877551e-05

Joint ci ratio: 2.530287e-01	ci left: 4.270026e-05	ci right 5.525428e-05	k: 239	n:4910000
Cons ci ratio: 2.651044e-03	ci left: 3.076955e-01	ci right 3.085125e-01	k: 1512790	n:4910000
KS ci ratio: 4.652150e-01	ci left: 1.111375e-05	ci right 1.801235e-05	k: 70	n:4910000
GPR158   4910000 perm   9861 sec   (498 perm/sec)   p_kst 1.425662e-05   p_cons 3.081039e-01   p_joint 4.867617e-05

Joint ci ratio: 2.525032e-01	ci left: 4.280385e-05	ci right 5.535808e-05	k: 240	n:4920000
Cons ci ratio: 2.648372e-03	ci left: 3.076922e-01	ci right 3.085084e-01	k: 1515853	n:4920000
KS ci ratio: 4.619730e-01	ci left: 1.127066e-05	ci right 1.820258e-05	k: 71	n:4920000
GPR158   4920000 perm   9897 sec   (497 perm/sec)   p_kst 1.443089e-05   p_cons 3.081002e-01   p_joint 4.878049e-05

Joint ci ratio: 2.525032e-01	ci left: 4.271703e-05	ci right 5.524579e-05	k: 240	n:4930000
Cons ci ratio: 2.645741e-03	ci left: 3.076835e-01	ci right 3.084988e-01	k: 1518889	n:4930000
KS ci ratio: 4.619730e-01	ci left: 1.124780e-05	ci right 1.816565e-05	k: 71	n:4930000
GPR158   4930000 perm   9934 sec   (496 perm/sec)   p_kst 1.440162e-05   p_cons 3.080911e-01   p_joint 4.868154e-05

Joint ci ratio: 2.525032e-01	ci left: 4.263055e-05	ci right 5.513395e-05	k: 240	n:4940000
Cons ci ratio: 2.643020e-03	ci left: 3.076906e-01	ci right 3.085051e-01	k: 1522003	n:4940000
KS ci ratio: 4.619730e-01	ci left: 1.122503e-05	ci right 1.812888e-05	k: 71	n:4940000
GPR158   4940000 perm   9971 sec   (495 perm/sec)   p_kst 1.437247e-05   p_cons 3.080978e-01   p_joint 4.858300e-05

Joint ci ratio: 2.525032e-01	ci left: 4.254443e-05	ci right 5.502257e-05	k: 240	n:4950000
Cons ci ratio: 2.640378e-03	ci left: 3.076864e-01	ci right 3.085001e-01	k: 1525061	n:4950000
KS ci ratio: 4.619730e-01	ci left: 1.120236e-05	ci right 1.809226e-05	k: 71	n:4950000
GPR158   4950000 perm   10007 sec   (495 perm/sec)   p_kst 1.434343e-05   p_cons 3.080931e-01   p_joint 4.848485e-05

Joint ci ratio: 2.525032e-01	ci left: 4.245866e-05	ci right 5.491164e-05	k: 240	n:4960000
Cons ci ratio: 2.637796e-03	ci left: 3.076737e-01	ci right 3.084866e-01	k: 1528077	n:4960000
KS ci ratio: 4.619730e-01	ci left: 1.117977e-05	ci right 1.805578e-05	k: 71	n:4960000
GPR158   4960000 perm   10044 sec   (494 perm/sec)   p_kst 1.431452e-05   p_cons 3.080800e-01   p_joint 4.838710e-05

Joint ci ratio: 2.525032e-01	ci left: 4.237323e-05	ci right 5.480115e-05	k: 240	n:4970000
Cons ci ratio: 2.635030e-03	ci left: 3.076921e-01	ci right 3.085041e-01	k: 1531247	n:4970000
KS ci ratio: 4.619730e-01	ci left: 1.115728e-05	ci right 1.801945e-05	k: 71	n:4970000
GPR158   4970000 perm   10081 sec   (493 perm/sec)   p_kst 1.428571e-05   p_cons 3.080980e-01   p_joint 4.828974e-05

Joint ci ratio: 2.519810e-01	ci left: 4.247625e-05	ci right 5.490458e-05	k: 241	n:4980000
Cons ci ratio: 2.632452e-03	ci left: 3.076813e-01	ci right 3.084925e-01	k: 1534272	n:4980000
KS ci ratio: 4.587979e-01	ci left: 1.131238e-05	ci right 1.820721e-05	k: 72	n:4980000
GPR158   4980000 perm   10119 sec   (492 perm/sec)   p_kst 1.445783e-05   p_cons 3.080867e-01   p_joint 4.839357e-05

Joint ci ratio: 2.514620e-01	ci left: 4.257889e-05	ci right 5.500757e-05	k: 242	n:4990000
Cons ci ratio: 2.629843e-03	ci left: 3.076769e-01	ci right 3.084873e-01	k: 1537329	n:4990000
KS ci ratio: 4.556873e-01	ci left: 1.146702e-05	ci right 1.839406e-05	k: 73	n:4990000
GPR158   4990000 perm   10156 sec   (491 perm/sec)   p_kst 1.462926e-05   p_cons 3.080820e-01   p_joint 4.849699e-05

Joint ci ratio: 2.251913e-01	ci left: 5.377943e-05	ci right 6.761054e-05	k: 302	n:5000000
Cons ci ratio: 2.465450e-03	ci left: 3.354002e-01	ci right 3.362284e-01	k: 1679071	n:5000000
KS ci ratio: 4.556873e-01	ci left: 1.144409e-05	ci right 1.835727e-05	k: 73	n:5000000
GPR158   5000000 perm   10193 sec   (491 perm/sec)   p_kst 1.460000e-05   p_cons 3.358142e-01   p_joint 6.040000e-05

Outputting figure to mutsig2_images.part000000000073/GPR158.28_3692_5000000_1.46e-05_0.33581_6.04e-05.png
                gene_name: GPR158
               theta_stop: 0.46 
                    nperm: 5000000 
                     p_ks: 1.46e-05 
        ci_ks_bounds_left: 1.14e-05 
       ci_ks_bounds_right: 1.84e-05 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.34 
                  p_joint: 6.04e-05 
     ci_joint_bounds_left: 5.38e-05 
    ci_joint_bounds_right: 6.76e-05 

Current progress: 4 percent done.
GPR101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
GPR101   10000 perm   2 sec   (5863 perm/sec)   p_kst 3.378000e-01   p_cons 9.213000e-01   p_joint 5.506000e-01

Outputting figure to mutsig2_images.part000000000073/GPR101.14_1530_10000_0.3378_0.9213_0.5506.png
                gene_name: GPR101
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 5 percent done.
GPR139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
GPR139   10000 perm   2 sec   (6101 perm/sec)   p_kst 2.216000e-01   p_cons 1.864000e-01   p_joint 2.088000e-01

Outputting figure to mutsig2_images.part000000000073/GPR139.13_1070_10000_0.2216_0.1864_0.2088.png
                gene_name: GPR139
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 7 percent done.
GPR125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
GPR125   10000 perm   2 sec   (4608 perm/sec)   p_kst 4.910000e-02   p_cons 6.510000e-02   p_joint 2.750000e-02

Joint ci ratio: 1.506346e-01	ci left: 3.027829e-02	ci right 3.525876e-02	k: 654	n:20000
Cons ci ratio: 1.044829e-01	ci left: 6.230465e-02	ci right 6.922225e-02	k: 1314	n:20000
KS ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
GPR125   20000 perm   5 sec   (4229 perm/sec)   p_kst 4.985000e-02   p_cons 6.570000e-02   p_joint 3.270000e-02

Joint ci ratio: 1.378857e-01	ci left: 2.442185e-02	ci right 2.807068e-02	k: 786	n:30000
Cons ci ratio: 8.633403e-02	ci left: 6.151734e-02	ci right 6.710074e-02	k: 1928	n:30000
KS ci ratio: 1.005700e-01	ci left: 4.577092e-02	ci right 5.065039e-02	k: 1445	n:30000
GPR125   30000 perm   7 sec   (4085 perm/sec)   p_kst 4.816667e-02   p_cons 6.426667e-02   p_joint 2.620000e-02

Joint ci ratio: 1.289670e-01	ci left: 2.111732e-02	ci right 2.405256e-02	k: 902	n:40000
Cons ci ratio: 7.476773e-02	ci left: 6.189087e-02	ci right 6.672262e-02	k: 2571	n:40000
KS ci ratio: 8.671907e-02	ci left: 4.648859e-02	ci right 5.072725e-02	k: 1943	n:40000
GPR125   40000 perm   10 sec   (3994 perm/sec)   p_kst 4.857500e-02   p_cons 6.427500e-02   p_joint 2.255000e-02

Joint ci ratio: 7.934786e-02	ci left: 4.469034e-02	ci right 4.840253e-02	k: 2326	n:50000
Cons ci ratio: 7.030267e-02	ci left: 5.647827e-02	ci right 6.061317e-02	k: 2926	n:50000
KS ci ratio: 7.699954e-02	ci left: 4.737933e-02	ci right 5.119322e-02	k: 2463	n:50000
GPR125   50000 perm   13 sec   (3918 perm/sec)   p_kst 4.926000e-02   p_cons 5.852000e-02   p_joint 4.652000e-02

Outputting figure to mutsig2_images.part000000000073/GPR125.12_4042_50000_0.04926_0.05852_0.04652.png
                gene_name: GPR125
               theta_stop: 0.079 
                    nperm: 50000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 9 percent done.
GPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
Cons ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
GPC4   10000 perm   2 sec   (6147 perm/sec)   p_kst 9.339000e-01   p_cons 4.386000e-01   p_joint 8.127000e-01

Outputting figure to mutsig2_images.part000000000073/GPC4.10_1707_10000_0.9339_0.4386_0.8127.png
                gene_name: GPC4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 11 percent done.
GPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.737120e-02	ci left: 5.139556e-01	ci right 5.336306e-01	k: 5238	n:10000
Cons ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
KS ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
GPC5   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.833000e-01   p_cons 3.578000e-01   p_joint 5.238000e-01

Outputting figure to mutsig2_images.part000000000073/GPC5.10_1751_10000_0.5833_0.3578_0.5238.png
                gene_name: GPC5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
GPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
Cons ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
KS ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
GPC6   10000 perm   2 sec   (5942 perm/sec)   p_kst 9.530000e-02   p_cons 9.890000e-02   p_joint 7.330000e-02

Joint ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
Cons ci ratio: 8.550126e-02	ci left: 9.101944e-02	ci right 9.919871e-02	k: 1901	n:20000
KS ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
GPC6   20000 perm   4 sec   (5387 perm/sec)   p_kst 9.315000e-02   p_cons 9.505000e-02   p_joint 6.875000e-02

Joint ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
Cons ci ratio: 6.944937e-02	ci left: 9.265620e-02	ci right 9.935560e-02	k: 2879	n:30000
KS ci ratio: 7.119933e-02	ci left: 8.849000e-02	ci right 9.505597e-02	k: 2752	n:30000
GPC6   30000 perm   6 sec   (5161 perm/sec)   p_kst 9.173333e-02   p_cons 9.596667e-02   p_joint 5.153333e-02

Outputting figure to mutsig2_images.part000000000073/GPC6.8_1704_30000_0.091733_0.095967_0.051533.png
                gene_name: GPC6
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 14 percent done.
GPR128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
Cons ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
KS ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
GPR128   10000 perm   2 sec   (5924 perm/sec)   p_kst 7.930000e-02   p_cons 6.677000e-01   p_joint 1.572000e-01

Joint ci ratio: 6.756650e-02	ci left: 1.391612e-01	ci right 1.489425e-01	k: 2880	n:20000
Cons ci ratio: 1.959118e-02	ci left: 6.602688e-01	ci right 6.733827e-01	k: 13337	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
GPR128   20000 perm   4 sec   (5386 perm/sec)   p_kst 8.010000e-02   p_cons 6.668500e-01   p_joint 1.440000e-01

Outputting figure to mutsig2_images.part000000000073/GPR128.8_2458_20000_0.0801_0.66685_0.144.png
                gene_name: GPR128
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 16 percent done.
GPR133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
GPR133   10000 perm   2 sec   (5659 perm/sec)   p_kst 2.295000e-01   p_cons 1.279000e-01   p_joint 1.743000e-01

Joint ci ratio: 6.625540e-02	ci left: 1.439926e-01	ci right 1.539097e-01	k: 2978	n:20000
Cons ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
KS ci ratio: 5.107697e-02	ci left: 2.216554e-01	ci right 2.333239e-01	k: 4549	n:20000
GPR133   20000 perm   4 sec   (5141 perm/sec)   p_kst 2.274500e-01   p_cons 1.308500e-01   p_joint 1.489000e-01

Outputting figure to mutsig2_images.part000000000073/GPR133.8_2725_20000_0.22745_0.13085_0.1489.png
                gene_name: GPR133
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 18 percent done.
GPR142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
Cons ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
KS ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
GPR142   10000 perm   2 sec   (6069 perm/sec)   p_kst 3.955000e-01   p_cons 1.950000e-02   p_joint 5.410000e-02

Joint ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
Cons ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
KS ci ratio: 3.401221e-02	ci left: 3.922533e-01	ci right 4.058761e-01	k: 7981	n:20000
GPR142   20000 perm   4 sec   (5479 perm/sec)   p_kst 3.990500e-01   p_cons 1.915000e-02   p_joint 5.395000e-02

Joint ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
Cons ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
KS ci ratio: 2.771489e-02	ci left: 3.944829e-01	ci right 4.056032e-01	k: 12001	n:30000
GPR142   30000 perm   6 sec   (5248 perm/sec)   p_kst 4.000333e-01   p_cons 1.943333e-02   p_joint 5.740000e-02

Joint ci ratio: 7.656511e-02	ci left: 5.914048e-02	ci right 6.387342e-02	k: 2459	n:40000
Cons ci ratio: 1.359891e-01	ci left: 1.896456e-02	ci right 2.175569e-02	k: 813	n:40000
KS ci ratio: 2.386812e-02	ci left: 3.979134e-01	ci right 4.075507e-01	k: 16109	n:40000
GPR142   40000 perm   8 sec   (5101 perm/sec)   p_kst 4.027250e-01   p_cons 2.032500e-02   p_joint 6.147500e-02

Joint ci ratio: 6.657617e-02	ci left: 6.267724e-02	ci right 6.701345e-02	k: 3241	n:50000
Cons ci ratio: 1.181532e-01	ci left: 2.026591e-02	ci right 2.283005e-02	k: 1076	n:50000
KS ci ratio: 2.133098e-02	ci left: 3.988162e-01	ci right 4.074351e-01	k: 20156	n:50000
GPR142   50000 perm   10 sec   (4973 perm/sec)   p_kst 4.031200e-01   p_cons 2.152000e-02   p_joint 6.482000e-02

Joint ci ratio: 5.124763e-02	ci left: 8.656847e-02	ci right 9.113806e-02	k: 5330	n:60000
Cons ci ratio: 1.085215e-01	ci left: 2.012714e-02	ci right 2.245282e-02	k: 1276	n:60000
KS ci ratio: 2.022782e-02	ci left: 3.810539e-01	ci right 3.888572e-01	k: 23097	n:60000
GPR142   60000 perm   12 sec   (4866 perm/sec)   p_kst 3.849500e-01   p_cons 2.126667e-02   p_joint 8.883333e-02

Joint ci ratio: 4.965829e-02	ci left: 7.970938e-02	ci right 8.378252e-02	k: 5721	n:70000
Cons ci ratio: 9.941414e-02	ci left: 2.064730e-02	ci right 2.282117e-02	k: 1520	n:70000
KS ci ratio: 1.867413e-02	ci left: 3.826907e-01	ci right 3.899187e-01	k: 27041	n:70000
GPR142   70000 perm   15 sec   (4771 perm/sec)   p_kst 3.863000e-01   p_cons 2.171429e-02   p_joint 8.172857e-02

Outputting figure to mutsig2_images.part000000000073/GPR142.8_1405_70000_0.3863_0.021714_0.081729.png
                gene_name: GPR142
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.084 

Current progress: 20 percent done.
GPR149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
Cons ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
GPR149   10000 perm   2 sec   (5967 perm/sec)   p_kst 6.383000e-01   p_cons 8.578000e-01   p_joint 8.101000e-01

Outputting figure to mutsig2_images.part000000000073/GPR149.8_2212_10000_0.6383_0.8578_0.8101.png
                gene_name: GPR149
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 21 percent done.
GPR174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
Cons ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
KS ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
GPR174   10000 perm   1 sec   (6724 perm/sec)   p_kst 3.716000e-01   p_cons 1.580000e-02   p_joint 4.240000e-02

Joint ci ratio: 1.060895e-01	ci left: 6.050025e-02	ci right 6.732720e-02	k: 1277	n:20000
Cons ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
KS ci ratio: 3.614235e-02	ci left: 3.636019e-01	ci right 3.770358e-01	k: 7406	n:20000
GPR174   20000 perm   3 sec   (6003 perm/sec)   p_kst 3.703000e-01   p_cons 1.590000e-02   p_joint 6.385000e-02

Joint ci ratio: 7.147121e-02	ci left: 8.786689e-02	ci right 9.441254e-02	k: 2733	n:30000
Cons ci ratio: 1.885683e-01	ci left: 1.285992e-02	ci right 1.556869e-02	k: 425	n:30000
KS ci ratio: 2.937241e-02	ci left: 3.670250e-01	ci right 3.779997e-01	k: 11175	n:30000
GPR174   30000 perm   5 sec   (5699 perm/sec)   p_kst 3.725000e-01   p_cons 1.416667e-02   p_joint 9.110000e-02

Joint ci ratio: 7.409270e-02	ci left: 6.297173e-02	ci right 6.784159e-02	k: 2615	n:40000
Cons ci ratio: 1.643358e-01	ci left: 1.287150e-02	ci right 1.519984e-02	k: 560	n:40000
KS ci ratio: 2.506903e-02	ci left: 3.745913e-01	ci right 3.841262e-01	k: 15174	n:40000
GPR174   40000 perm   7 sec   (5484 perm/sec)   p_kst 3.793500e-01   p_cons 1.400000e-02   p_joint 6.537500e-02

Joint ci ratio: 7.582537e-02	ci left: 4.881282e-02	ci right 5.267956e-02	k: 2536	n:50000
Cons ci ratio: 1.491868e-01	ci left: 1.260310e-02	ci right 1.465395e-02	k: 680	n:50000
KS ci ratio: 2.198756e-02	ci left: 3.843441e-01	ci right 3.929089e-01	k: 19431	n:50000
GPR174   50000 perm   9 sec   (5322 perm/sec)   p_kst 3.886200e-01   p_cons 1.360000e-02   p_joint 5.072000e-02

Joint ci ratio: 8.162399e-02	ci left: 3.550372e-02	ci right 3.854128e-02	k: 2220	n:60000
Cons ci ratio: 1.283137e-01	ci left: 1.433303e-02	ci right 1.631425e-02	k: 918	n:60000
KS ci ratio: 2.007419e-02	ci left: 3.846637e-01	ci right 3.924804e-01	k: 23314	n:60000
GPR174   60000 perm   12 sec   (5204 perm/sec)   p_kst 3.885667e-01   p_cons 1.530000e-02   p_joint 3.700000e-02

Joint ci ratio: 6.470853e-02	ci left: 4.820008e-02	ci right 5.143737e-02	k: 3486	n:70000
Cons ci ratio: 1.198885e-01	ci left: 1.414027e-02	ci right 1.595739e-02	k: 1052	n:70000
KS ci ratio: 1.861407e-02	ci left: 3.842166e-01	ci right 3.914499e-01	k: 27148	n:70000
GPR174   70000 perm   14 sec   (5100 perm/sec)   p_kst 3.878286e-01   p_cons 1.502857e-02   p_joint 4.980000e-02

Joint ci ratio: 6.195915e-02	ci left: 4.617170e-02	ci right 4.913621e-02	k: 3811	n:80000
Cons ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
KS ci ratio: 1.741894e-02	ci left: 3.842592e-01	ci right 3.910239e-01	k: 31011	n:80000
GPR174   80000 perm   16 sec   (5000 perm/sec)   p_kst 3.876375e-01   p_cons 1.503750e-02   p_joint 4.763750e-02

Joint ci ratio: 6.072250e-02	ci left: 4.291012e-02	ci right 4.560824e-02	k: 3982	n:90000
Cons ci ratio: 1.058851e-01	ci left: 1.420516e-02	ci right 1.580410e-02	k: 1349	n:90000
KS ci ratio: 1.638149e-02	ci left: 3.856466e-01	ci right 3.920273e-01	k: 34995	n:90000
GPR174   90000 perm   18 sec   (4908 perm/sec)   p_kst 3.888333e-01   p_cons 1.498889e-02   p_joint 4.424444e-02

Joint ci ratio: 5.321482e-02	ci left: 5.009869e-02	ci right 5.284740e-02	k: 5146	n:100000
Cons ci ratio: 9.987845e-02	ci left: 1.441177e-02	ci right 1.593655e-02	k: 1516	n:100000
KS ci ratio: 1.552824e-02	ci left: 3.861963e-01	ci right 3.922501e-01	k: 38922	n:100000
GPR174   100000 perm   21 sec   (4811 perm/sec)   p_kst 3.892200e-01   p_cons 1.516000e-02   p_joint 5.146000e-02

Outputting figure to mutsig2_images.part000000000073/GPR174.8_1006_100000_0.38922_0.01516_0.05146.png
                gene_name: GPR174
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 23 percent done.
GPM6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
Cons ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
GPM6A   10000 perm   2 sec   (6329 perm/sec)   p_kst 8.362000e-01   p_cons 4.570000e-01   p_joint 8.997000e-01

Outputting figure to mutsig2_images.part000000000073/GPM6A.7_873_10000_0.8362_0.457_0.8997.png
                gene_name: GPM6A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 25 percent done.
GPR126
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
GPR126   10000 perm   2 sec   (5804 perm/sec)   p_kst 7.541000e-01   p_cons 8.140000e-02   p_joint 2.680000e-01

Joint ci ratio: 4.239115e-02	ci left: 2.931068e-01	ci right 3.058515e-01	k: 5989	n:20000
Cons ci ratio: 8.503271e-02	ci left: 9.195118e-02	ci right 1.001667e-01	k: 1920	n:20000
KS ci ratio: 1.572370e-02	ci left: 7.505402e-01	ci right 7.624852e-01	k: 15131	n:20000
GPR126   20000 perm   4 sec   (5228 perm/sec)   p_kst 7.565500e-01   p_cons 9.600000e-02   p_joint 2.994500e-01

Outputting figure to mutsig2_images.part000000000073/GPR126.7_3903_20000_0.75655_0.096_0.29945.png
                gene_name: GPR126
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
GPR148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
Cons ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
KS ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
GPR148   10000 perm   1 sec   (7021 perm/sec)   p_kst 3.711000e-01   p_cons 4.599000e-01   p_joint 5.202000e-01

Outputting figure to mutsig2_images.part000000000073/GPR148.7_1048_10000_0.3711_0.4599_0.5202.png
                gene_name: GPR148
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 29 percent done.
GPR155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
Cons ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KS ci ratio: 2.964019e-02	ci left: 6.266822e-01	ci right 6.456384e-01	k: 6362	n:10000
GPR155   10000 perm   1 sec   (6726 perm/sec)   p_kst 6.362000e-01   p_cons 1.422000e-01   p_joint 4.557000e-01

Outputting figure to mutsig2_images.part000000000073/GPR155.7_2673_10000_0.6362_0.1422_0.4557.png
                gene_name: GPR155
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 30 percent done.
GPD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
Cons ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
GPD1L   10000 perm   1 sec   (7039 perm/sec)   p_kst 5.554000e-01   p_cons 1.704000e-01   p_joint 3.524000e-01

Outputting figure to mutsig2_images.part000000000073/GPD1L.6_1088_10000_0.5554_0.1704_0.3524.png
                gene_name: GPD1L
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 32 percent done.
GPR115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
GPR115   10000 perm   2 sec   (6203 perm/sec)   p_kst 7.289000e-01   p_cons 4.533000e-01   p_joint 8.744000e-01

Outputting figure to mutsig2_images.part000000000073/GPR115.6_2120_10000_0.7289_0.4533_0.8744.png
                gene_name: GPR115
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 34 percent done.
GPR141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
Cons ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
KS ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
GPR141   10000 perm   1 sec   (6979 perm/sec)   p_kst 6.920000e-01   p_cons 4.206000e-01   p_joint 6.727000e-01

Outputting figure to mutsig2_images.part000000000073/GPR141.6_922_10000_0.692_0.4206_0.6727.png
                gene_name: GPR141
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 36 percent done.
GPR156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
KS ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
GPR156   10000 perm   2 sec   (6031 perm/sec)   p_kst 2.092000e-01   p_cons 5.260000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000073/GPR156.6_2481_10000_0.2092_0.526_0.37.png
                gene_name: GPR156
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 38 percent done.
GPR179
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
Cons ci ratio: 2.985822e-02	ci left: 6.232646e-01	ci right 6.422580e-01	k: 6328	n:10000
KS ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
GPR179   10000 perm   2 sec   (4859 perm/sec)   p_kst 3.930000e-02   p_cons 6.328000e-01   p_joint 1.026000e-01

Joint ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
Cons ci ratio: 2.078576e-02	ci left: 6.333529e-01	ci right 6.467064e-01	k: 12801	n:20000
KS ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
GPR179   20000 perm   5 sec   (4417 perm/sec)   p_kst 3.975000e-02   p_cons 6.400500e-01   p_joint 7.200000e-02

Joint ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
Cons ci ratio: 1.826867e-02	ci left: 5.999094e-01	ci right 6.110035e-01	k: 18164	n:30000
KS ci ratio: 1.129984e-01	ci left: 3.638338e-02	ci right 4.077323e-02	k: 1156	n:30000
GPR179   30000 perm   7 sec   (4234 perm/sec)   p_kst 3.853333e-02   p_cons 6.054667e-01   p_joint 6.753333e-02

Joint ci ratio: 7.256128e-02	ci left: 6.552728e-02	ci right 7.048566e-02	k: 2719	n:40000
Cons ci ratio: 1.594213e-02	ci left: 5.970080e-01	ci right 6.066272e-01	k: 24073	n:40000
KS ci ratio: 9.834715e-02	ci left: 3.631826e-02	ci right 4.009916e-02	k: 1527	n:40000
GPR179   40000 perm   10 sec   (4148 perm/sec)   p_kst 3.817500e-02   p_cons 6.018250e-01   p_joint 6.797500e-02

Outputting figure to mutsig2_images.part000000000073/GPR179.6_7148_40000_0.038175_0.60183_0.067975.png
                gene_name: GPR179
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 39 percent done.
GPR22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.527085e-03	ci left: 9.396240e-01	ci right 9.487151e-01	k: 9443	n:10000
KS ci ratio: 2.072176e-02	ci left: 7.733708e-01	ci right 7.896649e-01	k: 7816	n:10000
GPR22   10000 perm   2 sec   (6373 perm/sec)   p_kst 7.816000e-01   p_cons 9.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR22.6_1306_10000_0.7816_0.9443_1.png
                gene_name: GPR22
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
GPNMB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
Cons ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
KS ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
GPNMB   10000 perm   2 sec   (5800 perm/sec)   p_kst 4.897000e-01   p_cons 8.460000e-01   p_joint 6.521000e-01

Outputting figure to mutsig2_images.part000000000073/GPNMB.4_1763_10000_0.4897_0.846_0.6521.png
                gene_name: GPNMB
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 43 percent done.
GPR116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
KS ci ratio: 6.682605e-02	ci left: 2.473694e-01	ci right 2.645729e-01	k: 2559	n:10000
GPR116   10000 perm   2 sec   (4845 perm/sec)   p_kst 2.559000e-01   p_cons 2.862000e-01   p_joint 2.819000e-01

Outputting figure to mutsig2_images.part000000000073/GPR116.5_4121_10000_0.2559_0.2862_0.2819.png
                gene_name: GPR116
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 45 percent done.
GPR15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
GPR15   10000 perm   2 sec   (6626 perm/sec)   p_kst 1.911000e-01   p_cons 6.779000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000073/GPR15.5_1085_10000_0.1911_0.6779_0.3663.png
                gene_name: GPR15
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 46 percent done.
GPR26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
GPR26   10000 perm   1 sec   (6784 perm/sec)   p_kst 2.293000e-01   p_cons 3.432000e-01   p_joint 2.859000e-01

Outputting figure to mutsig2_images.part000000000073/GPR26.5_1026_10000_0.2293_0.3432_0.2859.png
                gene_name: GPR26
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 48 percent done.
GPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
Cons ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
KS ci ratio: 1.808679e-02	ci left: 8.169002e-01	ci right 8.319103e-01	k: 8245	n:10000
GPC3   10000 perm   2 sec   (5711 perm/sec)   p_kst 8.245000e-01   p_cons 1.566000e-01   p_joint 3.630000e-01

Outputting figure to mutsig2_images.part000000000073/GPC3.4_1848_10000_0.8245_0.1566_0.363.png
                gene_name: GPC3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
GPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
KS ci ratio: 2.057000e-02	ci left: 7.759037e-01	ci right 7.921305e-01	k: 7841	n:10000
GPD2   10000 perm   2 sec   (5806 perm/sec)   p_kst 7.841000e-01   p_cons 6.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPD2.4_2248_10000_0.7841_0.6383_1.png
                gene_name: GPD2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GPKOW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
Cons ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
KS ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
GPKOW   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.646000e-01   p_cons 1.650000e-02   p_joint 9.880000e-02

Joint ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
Cons ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
KS ci ratio: 2.418429e-02	ci left: 5.608500e-01	ci right 5.746303e-01	k: 11355	n:20000
GPKOW   20000 perm   4 sec   (5232 perm/sec)   p_kst 5.677500e-01   p_cons 1.740000e-02   p_joint 8.705000e-02

Joint ci ratio: 7.716840e-02	ci left: 7.613559e-02	ci right 8.227953e-02	k: 2375	n:30000
Cons ci ratio: 1.712440e-01	ci left: 1.569513e-02	ci right 1.866610e-02	k: 514	n:30000
KS ci ratio: 1.959769e-02	ci left: 5.658435e-01	ci right 5.770760e-01	k: 17144	n:30000
GPKOW   30000 perm   6 sec   (4984 perm/sec)   p_kst 5.714667e-01   p_cons 1.713333e-02   p_joint 7.916667e-02

Joint ci ratio: 7.283460e-02	ci left: 6.506032e-02	ci right 7.000268e-02	k: 2700	n:40000
Cons ci ratio: 1.488176e-01	ci left: 1.577991e-02	ci right 1.834090e-02	k: 681	n:40000
KS ci ratio: 1.706311e-02	ci left: 5.639794e-01	ci right 5.737106e-01	k: 22754	n:40000
GPKOW   40000 perm   8 sec   (4825 perm/sec)   p_kst 5.688500e-01   p_cons 1.702500e-02   p_joint 6.750000e-02

Joint ci ratio: 7.171884e-02	ci left: 5.435440e-02	ci right 5.841729e-02	k: 2818	n:50000
Cons ci ratio: 1.334657e-01	ci left: 1.582699e-02	ci right 1.810959e-02	k: 847	n:50000
KS ci ratio: 1.528639e-02	ci left: 5.637043e-01	ci right 5.724078e-01	k: 28403	n:50000
GPKOW   50000 perm   11 sec   (4727 perm/sec)   p_kst 5.680600e-01   p_cons 1.694000e-02   p_joint 5.636000e-02

Joint ci ratio: 6.479090e-02	ci left: 5.563397e-02	ci right 5.937564e-02	k: 3449	n:60000
Cons ci ratio: 1.223642e-01	ci left: 1.578672e-02	ci right 1.786039e-02	k: 1008	n:60000
KS ci ratio: 1.399137e-02	ci left: 5.627903e-01	ci right 5.707366e-01	k: 34006	n:60000
GPKOW   60000 perm   13 sec   (4642 perm/sec)   p_kst 5.667667e-01   p_cons 1.680000e-02   p_joint 5.748333e-02

Joint ci ratio: 5.140015e-02	ci left: 7.473906e-02	ci right 7.869611e-02	k: 5369	n:70000
Cons ci ratio: 1.069542e-01	ci left: 1.782061e-02	ci right 1.984812e-02	k: 1317	n:70000
KS ci ratio: 1.294361e-02	ci left: 5.634626e-01	ci right 5.708176e-01	k: 39700	n:70000
GPKOW   70000 perm   15 sec   (4557 perm/sec)   p_kst 5.671429e-01   p_cons 1.881429e-02   p_joint 7.670000e-02

Joint ci ratio: 4.658868e-02	ci left: 7.940279e-02	ci right 8.320264e-02	k: 6503	n:80000
Cons ci ratio: 9.982007e-02	ci left: 1.796762e-02	ci right 1.986749e-02	k: 1512	n:80000
KS ci ratio: 1.211088e-02	ci left: 5.635704e-01	ci right 5.704498e-01	k: 45361	n:80000
GPKOW   80000 perm   18 sec   (4468 perm/sec)   p_kst 5.670125e-01   p_cons 1.890000e-02   p_joint 8.128750e-02

Outputting figure to mutsig2_images.part000000000073/GPKOW.4_1475_80000_0.56701_0.0189_0.081287.png
                gene_name: GPKOW
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.083 

Current progress: 54 percent done.
GPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
Cons ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
KS ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
GPLD1   10000 perm   2 sec   (5862 perm/sec)   p_kst 6.395000e-01   p_cons 7.300000e-02   p_joint 2.216000e-01

Joint ci ratio: 5.020629e-02	ci left: 2.277004e-01	ci right 2.394771e-01	k: 4671	n:20000
Cons ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
KS ci ratio: 1.969709e-02	ci left: 6.578575e-01	ci right 6.709947e-01	k: 13289	n:20000
GPLD1   20000 perm   4 sec   (5207 perm/sec)   p_kst 6.644500e-01   p_cons 6.975000e-02   p_joint 2.335500e-01

Joint ci ratio: 4.103542e-02	ci left: 2.284242e-01	ci right 2.380275e-01	k: 6996	n:30000
Cons ci ratio: 8.247087e-02	ci left: 6.713787e-02	ci right 7.294573e-02	k: 2100	n:30000
KS ci ratio: 1.598853e-02	ci left: 6.617013e-01	ci right 6.723997e-01	k: 20012	n:30000
GPLD1   30000 perm   6 sec   (4954 perm/sec)   p_kst 6.670667e-01   p_cons 7.000000e-02   p_joint 2.332000e-01

Outputting figure to mutsig2_images.part000000000073/GPLD1.4_2664_30000_0.66707_0.07_0.2332.png
                gene_name: GPLD1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 55 percent done.
GPR111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
GPR111   10000 perm   2 sec   (5875 perm/sec)   p_kst 2.170000e-02   p_cons 8.534000e-01   p_joint 8.150000e-02

Joint ci ratio: 9.910338e-02	ci left: 6.894349e-02	ci right 7.618137e-02	k: 1450	n:20000
Cons ci ratio: 1.150299e-02	ci left: 8.481175e-01	ci right 8.579796e-01	k: 17062	n:20000
KS ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
GPR111   20000 perm   4 sec   (5272 perm/sec)   p_kst 2.040000e-02   p_cons 8.531000e-01   p_joint 7.250000e-02

Joint ci ratio: 7.688761e-02	ci left: 7.665948e-02	ci right 8.282219e-02	k: 2391	n:30000
Cons ci ratio: 9.378202e-03	ci left: 8.494140e-01	ci right 8.574507e-01	k: 25604	n:30000
KS ci ratio: 1.593736e-01	ci left: 1.818947e-02	ci right 2.137116e-02	k: 592	n:30000
GPR111   30000 perm   6 sec   (5023 perm/sec)   p_kst 1.973333e-02   p_cons 8.534667e-01   p_joint 7.970000e-02

Joint ci ratio: 7.352296e-02	ci left: 6.390537e-02	ci right 6.880782e-02	k: 2653	n:40000
Cons ci ratio: 8.406726e-03	ci left: 8.410374e-01	ci right 8.481625e-01	k: 33785	n:40000
KS ci ratio: 1.383498e-01	ci left: 1.831230e-02	ci right 2.105806e-02	k: 786	n:40000
GPR111   40000 perm   8 sec   (4859 perm/sec)   p_kst 1.965000e-02   p_cons 8.446250e-01   p_joint 6.632500e-02

Joint ci ratio: 6.553392e-02	ci left: 6.458735e-02	ci right 6.898311e-02	k: 3338	n:50000
Cons ci ratio: 7.522742e-03	ci left: 8.412937e-01	ci right 8.476663e-01	k: 42225	n:50000
KS ci ratio: 1.246356e-01	ci left: 1.818962e-02	ci right 2.062663e-02	k: 969	n:50000
GPR111   50000 perm   11 sec   (4710 perm/sec)   p_kst 1.938000e-02   p_cons 8.445000e-01   p_joint 6.676000e-02

Joint ci ratio: 5.272659e-02	ci left: 8.212162e-02	ci right 8.658534e-02	k: 5060	n:60000
Cons ci ratio: 6.633452e-03	ci left: 8.505276e-01	ci right 8.562049e-01	k: 51203	n:60000
KS ci ratio: 1.135775e-01	ci left: 1.835994e-02	ci right 2.058688e-02	k: 1167	n:60000
GPR111   60000 perm   13 sec   (4600 perm/sec)   p_kst 1.945000e-02   p_cons 8.533833e-01   p_joint 8.433333e-02

Joint ci ratio: 4.890363e-02	ci left: 8.201176e-02	ci right 8.613708e-02	k: 5884	n:70000
Cons ci ratio: 6.127276e-03	ci left: 8.513192e-01	ci right 8.565657e-01	k: 59777	n:70000
KS ci ratio: 1.049824e-01	ci left: 1.850240e-02	ci right 2.056627e-02	k: 1366	n:70000
GPR111   70000 perm   16 sec   (4498 perm/sec)   p_kst 1.951429e-02   p_cons 8.539571e-01   p_joint 8.405714e-02

Joint ci ratio: 4.827303e-02	ci left: 7.430881e-02	ci right 7.799700e-02	k: 6091	n:80000
Cons ci ratio: 5.742889e-03	ci left: 8.509929e-01	ci right 8.559065e-01	k: 68277	n:80000
KS ci ratio: 9.760750e-02	ci left: 1.879702e-02	ci right 2.073803e-02	k: 1580	n:80000
GPR111   80000 perm   18 sec   (4412 perm/sec)   p_kst 1.975000e-02   p_cons 8.534625e-01   p_joint 7.613750e-02

Outputting figure to mutsig2_images.part000000000073/GPR111.4_1957_80000_0.01975_0.85346_0.076137.png
                gene_name: GPR111
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 57 percent done.
GPR123
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 59 percent done.
GPR137B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
GPR137B   10000 perm   2 sec   (6162 perm/sec)   p_kst 1.030000e-02   p_cons 1.336000e-01   p_joint 1.020000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 7.118697e-02	ci left: 1.269437e-01	ci right 1.363637e-01	k: 2632	n:20000
KS ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
GPR137B   20000 perm   4 sec   (5488 perm/sec)   p_kst 1.020000e-02   p_cons 1.316000e-01   p_joint 6.300000e-03

Joint ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
Cons ci ratio: 5.844419e-02	ci left: 1.265758e-01	ci right 1.342293e-01	k: 3911	n:30000
KS ci ratio: 2.323291e-01	ci left: 8.307694e-03	ci right 1.052221e-02	k: 281	n:30000
GPR137B   30000 perm   6 sec   (5237 perm/sec)   p_kst 9.366667e-03   p_cons 1.303667e-01   p_joint 8.466667e-03

Joint ci ratio: 2.555046e-01	ci left: 5.102800e-03	ci right 6.620287e-03	k: 233	n:40000
Cons ci ratio: 5.054746e-02	ci left: 1.273864e-01	ci right 1.340173e-01	k: 5227	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
GPR137B   40000 perm   8 sec   (5060 perm/sec)   p_kst 9.625000e-03   p_cons 1.306750e-01   p_joint 5.825000e-03

Joint ci ratio: 2.619140e-01	ci left: 3.876169e-03	ci right 5.062495e-03	k: 222	n:50000
Cons ci ratio: 4.539105e-02	ci left: 1.268459e-01	ci right 1.327572e-01	k: 6489	n:50000
KS ci ratio: 1.763978e-01	ci left: 8.916851e-03	ci right 1.066077e-02	k: 488	n:50000
GPR137B   50000 perm   10 sec   (4899 perm/sec)   p_kst 9.760000e-03   p_cons 1.297800e-01   p_joint 4.440000e-03

Joint ci ratio: 2.499257e-01	ci left: 3.573225e-03	ci right 4.608982e-03	k: 244	n:60000
Cons ci ratio: 4.146069e-02	ci left: 1.269718e-01	ci right 1.323641e-01	k: 7779	n:60000
KS ci ratio: 1.636978e-01	ci left: 8.691314e-03	ci right 1.025668e-02	k: 567	n:60000
GPR137B   60000 perm   13 sec   (4766 perm/sec)   p_kst 9.450000e-03   p_cons 1.296500e-01   p_joint 4.066667e-03

Joint ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
Cons ci ratio: 3.835039e-02	ci left: 1.273752e-01	ci right 1.323698e-01	k: 9090	n:70000
KS ci ratio: 1.511715e-01	ci left: 8.794644e-03	ci right 1.024645e-02	k: 665	n:70000
GPR137B   70000 perm   15 sec   (4652 perm/sec)   p_kst 9.500000e-03   p_cons 1.298571e-01   p_joint 5.100000e-03

Joint ci ratio: 1.898657e-01	ci left: 4.796712e-03	ci right 5.814670e-03	k: 423	n:80000
Cons ci ratio: 3.595254e-02	ci left: 1.270442e-01	ci right 1.317077e-01	k: 10349	n:80000
KS ci ratio: 1.405846e-01	ci left: 8.947960e-03	ci right 1.031296e-02	k: 769	n:80000
GPR137B   80000 perm   18 sec   (4552 perm/sec)   p_kst 9.612500e-03   p_cons 1.293625e-01   p_joint 5.287500e-03

Joint ci ratio: 1.767853e-01	ci left: 4.952892e-03	ci right 5.923848e-03	k: 488	n:90000
Cons ci ratio: 3.390267e-02	ci left: 1.271364e-01	ci right 1.315320e-01	k: 11639	n:90000
KS ci ratio: 1.314948e-01	ci left: 9.134456e-03	ci right 1.043077e-02	k: 879	n:90000
GPR137B   90000 perm   20 sec   (4459 perm/sec)   p_kst 9.766667e-03   p_cons 1.293222e-01   p_joint 5.422222e-03

Joint ci ratio: 1.691806e-01	ci left: 4.888111e-03	ci right 5.800941e-03	k: 533	n:100000
Cons ci ratio: 3.212061e-02	ci left: 1.275440e-01	ci right 1.317175e-01	k: 12962	n:100000
KS ci ratio: 1.247972e-01	ci left: 9.159935e-03	ci right 1.038875e-02	k: 976	n:100000
GPR137B   100000 perm   23 sec   (4374 perm/sec)   p_kst 9.760000e-03   p_cons 1.296200e-01   p_joint 5.330000e-03

Joint ci ratio: 1.833911e-01	ci left: 3.756986e-03	ci right 4.524067e-03	k: 454	n:110000
Cons ci ratio: 3.060768e-02	ci left: 1.277740e-01	ci right 1.317546e-01	k: 14273	n:110000
KS ci ratio: 1.193658e-01	ci left: 9.129220e-03	ci right 1.029685e-02	k: 1067	n:110000
GPR137B   110000 perm   26 sec   (4294 perm/sec)   p_kst 9.700000e-03   p_cons 1.297545e-01   p_joint 4.127273e-03

Joint ci ratio: 1.428814e-01	ci left: 5.787788e-03	ci right 6.686325e-03	k: 747	n:120000
Cons ci ratio: 2.930532e-02	ci left: 1.278536e-01	ci right 1.316643e-01	k: 15570	n:120000
KS ci ratio: 1.206169e-01	ci left: 8.198465e-03	ci right 9.258815e-03	k: 1046	n:120000
GPR137B   120000 perm   28 sec   (4219 perm/sec)   p_kst 8.716667e-03   p_cons 1.297500e-01   p_joint 6.225000e-03

Joint ci ratio: 1.421533e-01	ci left: 5.401840e-03	ci right 6.235820e-03	k: 755	n:130000
Cons ci ratio: 2.814375e-02	ci left: 1.280234e-01	ci right 1.316855e-01	k: 16880	n:130000
KS ci ratio: 1.155898e-01	ci left: 8.262084e-03	ci right 9.283085e-03	k: 1139	n:130000
GPR137B   130000 perm   31 sec   (4149 perm/sec)   p_kst 8.761538e-03   p_cons 1.298462e-01   p_joint 5.807692e-03

Joint ci ratio: 1.460192e-01	ci left: 4.747346e-03	ci right 5.501946e-03	k: 716	n:140000
Cons ci ratio: 2.714793e-02	ci left: 1.278590e-01	ci right 1.313849e-01	k: 18146	n:140000
KS ci ratio: 1.106013e-01	ci left: 8.400758e-03	ci right 9.391172e-03	k: 1244	n:140000
GPR137B   140000 perm   34 sec   (4070 perm/sec)   p_kst 8.885714e-03   p_cons 1.296143e-01   p_joint 5.114286e-03

Joint ci ratio: 1.422088e-01	ci left: 4.681470e-03	ci right 5.404532e-03	k: 755	n:150000
Cons ci ratio: 2.620356e-02	ci left: 1.281229e-01	ci right 1.315314e-01	k: 19473	n:150000
KS ci ratio: 1.071321e-01	ci left: 8.372482e-03	ci right 9.326648e-03	k: 1326	n:150000
GPR137B   150000 perm   37 sec   (4003 perm/sec)   p_kst 8.840000e-03   p_cons 1.298200e-01   p_joint 5.033333e-03

Joint ci ratio: 1.384196e-01	ci left: 4.642157e-03	ci right 5.338466e-03	k: 797	n:160000
Cons ci ratio: 2.535345e-02	ci left: 1.283371e-01	ci right 1.316388e-01	k: 20797	n:160000
KS ci ratio: 1.031970e-01	ci left: 8.476045e-03	ci right 9.404380e-03	k: 1429	n:160000
GPR137B   160000 perm   41 sec   (3937 perm/sec)   p_kst 8.931250e-03   p_cons 1.299812e-01   p_joint 4.981250e-03

Joint ci ratio: 1.403979e-01	ci left: 4.244129e-03	ci right 4.890593e-03	k: 775	n:170000
Cons ci ratio: 2.460534e-02	ci left: 1.283052e-01	ci right 1.315074e-01	k: 22083	n:170000
KS ci ratio: 1.006984e-01	ci left: 8.390166e-03	ci right 9.285528e-03	k: 1501	n:170000
GPR137B   170000 perm   44 sec   (3872 perm/sec)   p_kst 8.829412e-03   p_cons 1.299000e-01   p_joint 4.558824e-03

Joint ci ratio: 1.425532e-01	ci left: 3.885037e-03	ci right 4.486660e-03	k: 752	n:180000
Cons ci ratio: 2.387811e-02	ci left: 1.286707e-01	ci right 1.317857e-01	k: 23440	n:180000
KS ci ratio: 9.784123e-02	ci left: 8.406218e-03	ci right 9.276378e-03	k: 1590	n:180000
GPR137B   180000 perm   47 sec   (3810 perm/sec)   p_kst 8.833333e-03   p_cons 1.302222e-01   p_joint 4.177778e-03

Joint ci ratio: 1.419083e-01	ci left: 3.716069e-03	ci right 4.288701e-03	k: 759	n:190000
Cons ci ratio: 2.322791e-02	ci left: 1.288417e-01	ci right 1.318748e-01	k: 24767	n:190000
KS ci ratio: 9.510004e-02	ci left: 8.441457e-03	ci right 9.289419e-03	k: 1683	n:190000
GPR137B   190000 perm   51 sec   (3750 perm/sec)   p_kst 8.857895e-03   p_cons 1.303526e-01   p_joint 3.994737e-03

Joint ci ratio: 1.411786e-01	ci left: 3.568830e-03	ci right 4.115705e-03	k: 767	n:200000
Cons ci ratio: 2.266255e-02	ci left: 1.286534e-01	ci right 1.316074e-01	k: 26025	n:200000
KS ci ratio: 9.265599e-02	ci left: 8.458823e-03	ci right 9.285507e-03	k: 1773	n:200000
GPR137B   200000 perm   54 sec   (3693 perm/sec)   p_kst 8.865000e-03   p_cons 1.301250e-01   p_joint 3.835000e-03

Joint ci ratio: 1.123667e-01	ci left: 5.438014e-03	ci right 6.090028e-03	k: 1209	n:210000
Cons ci ratio: 2.211885e-02	ci left: 1.286639e-01	ci right 1.315463e-01	k: 27321	n:210000
KS ci ratio: 9.036673e-02	ci left: 8.479442e-03	ci right 9.286583e-03	k: 1864	n:210000
GPR137B   210000 perm   58 sec   (3638 perm/sec)   p_kst 8.876190e-03   p_cons 1.301000e-01   p_joint 5.757143e-03

Joint ci ratio: 1.152414e-01	ci left: 4.930208e-03	ci right 5.537485e-03	k: 1150	n:220000
Cons ci ratio: 2.161119e-02	ci left: 1.286878e-01	ci right 1.315038e-01	k: 28620	n:220000
KS ci ratio: 8.830752e-02	ci left: 8.485077e-03	ci right 9.273399e-03	k: 1952	n:220000
GPR137B   220000 perm   61 sec   (3585 perm/sec)   p_kst 8.872727e-03   p_cons 1.300909e-01   p_joint 5.227273e-03

Joint ci ratio: 1.140167e-01	ci left: 4.821415e-03	ci right 5.408555e-03	k: 1175	n:230000
Cons ci ratio: 2.111344e-02	ci left: 1.289614e-01	ci right 1.317175e-01	k: 29977	n:230000
KS ci ratio: 8.648991e-02	ci left: 8.469139e-03	ci right 9.238967e-03	k: 2035	n:230000
GPR137B   230000 perm   65 sec   (3534 perm/sec)   p_kst 8.847826e-03   p_cons 1.303348e-01   p_joint 5.108696e-03

Joint ci ratio: 1.153674e-01	ci left: 4.511208e-03	ci right 5.067522e-03	k: 1148	n:240000
Cons ci ratio: 2.067741e-02	ci left: 1.288975e-01	ci right 1.315947e-01	k: 31258	n:240000
KS ci ratio: 8.427994e-02	ci left: 8.556666e-03	ci right 9.313599e-03	k: 2143	n:240000
GPR137B   240000 perm   69 sec   (3482 perm/sec)   p_kst 8.929167e-03   p_cons 1.302417e-01   p_joint 4.783333e-03

Joint ci ratio: 9.737990e-02	ci left: 6.126271e-03	ci right 6.757253e-03	k: 1609	n:250000
Cons ci ratio: 2.027162e-02	ci left: 1.287915e-01	ci right 1.314330e-01	k: 32527	n:250000
KS ci ratio: 8.241595e-02	ci left: 8.598236e-03	ci right 9.341215e-03	k: 2241	n:250000
GPR137B   250000 perm   73 sec   (3433 perm/sec)   p_kst 8.964000e-03   p_cons 1.301080e-01   p_joint 6.436000e-03

Outputting figure to mutsig2_images.part000000000073/GPR137B.4_1228_250000_0.008964_0.13011_0.006436.png
                gene_name: GPR137B
               theta_stop: 0.097 
                    nperm: 250000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0064 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0068 

Current progress: 61 percent done.
GPR21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
Cons ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
KS ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
GPR21   10000 perm   2 sec   (6142 perm/sec)   p_kst 3.380000e-02   p_cons 3.304000e-01   p_joint 9.050000e-02

Joint ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
Cons ci ratio: 3.991940e-02	ci left: 3.187583e-01	ci right 3.317926e-01	k: 6505	n:20000
KS ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
GPR21   20000 perm   4 sec   (5492 perm/sec)   p_kst 3.240000e-02   p_cons 3.252500e-01   p_joint 4.190000e-02

Joint ci ratio: 9.145886e-02	ci left: 5.505507e-02	ci right 6.036432e-02	k: 1730	n:30000
Cons ci ratio: 3.296139e-02	ci left: 3.150874e-01	ci right 3.256807e-01	k: 9611	n:30000
KS ci ratio: 1.233510e-01	ci left: 3.055447e-02	ci right 3.460338e-02	k: 976	n:30000
GPR21   30000 perm   6 sec   (5230 perm/sec)   p_kst 3.253333e-02   p_cons 3.203667e-01   p_joint 5.766667e-02

Joint ci ratio: 6.863455e-02	ci left: 7.280628e-02	ci right 7.800556e-02	k: 3015	n:40000
Cons ci ratio: 2.856836e-02	ci left: 3.154542e-01	ci right 3.246219e-01	k: 12801	n:40000
KS ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
GPR21   40000 perm   8 sec   (5045 perm/sec)   p_kst 3.257500e-02   p_cons 3.200250e-01   p_joint 7.537500e-02

Joint ci ratio: 6.954864e-02	ci left: 5.765853e-02	ci right 6.183276e-02	k: 2986	n:50000
Cons ci ratio: 2.559171e-02	ci left: 3.152740e-01	ci right 3.234670e-01	k: 15968	n:50000
KS ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
GPR21   50000 perm   10 sec   (4900 perm/sec)   p_kst 3.210000e-02   p_cons 3.193600e-01   p_joint 5.972000e-02

Outputting figure to mutsig2_images.part000000000073/GPR21.4_1053_50000_0.0321_0.31936_0.05972.png
                gene_name: GPR21
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 62 percent done.
GPR31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
Cons ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
KS ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
GPR31   10000 perm   2 sec   (6199 perm/sec)   p_kst 9.118000e-01   p_cons 7.250000e-02   p_joint 1.890000e-01

Joint ci ratio: 4.721634e-02	ci left: 2.502105e-01	ci right 2.623605e-01	k: 5125	n:20000
Cons ci ratio: 9.980974e-02	ci left: 6.801542e-02	ci right 7.520972e-02	k: 1431	n:20000
KS ci ratio: 8.574208e-03	ci left: 9.087027e-01	ci right 9.165769e-01	k: 18254	n:20000
GPR31   20000 perm   4 sec   (5529 perm/sec)   p_kst 9.127000e-01   p_cons 7.155000e-02   p_joint 2.562500e-01

Outputting figure to mutsig2_images.part000000000073/GPR31.4_963_20000_0.9127_0.07155_0.25625.png
                gene_name: GPR31
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 64 percent done.
GPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
GPC2   10000 perm   2 sec   (6047 perm/sec)   p_kst 7.974000e-01   p_cons 4.726000e-01   p_joint 7.270000e-01

Outputting figure to mutsig2_images.part000000000073/GPC2.3_1780_10000_0.7974_0.4726_0.727.png
                gene_name: GPC2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 66 percent done.
GPCPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
Cons ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
KS ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
GPCPD1   10000 perm   2 sec   (6065 perm/sec)   p_kst 4.381000e-01   p_cons 6.494000e-01   p_joint 8.488000e-01

Outputting figure to mutsig2_images.part000000000073/GPCPD1.3_2095_10000_0.4381_0.6494_0.8488.png
                gene_name: GPCPD1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 68 percent done.
GPHN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
Cons ci ratio: 3.158488e-02	ci left: 5.966444e-01	ci right 6.158937e-01	k: 6063	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
GPHN   10000 perm   2 sec   (5787 perm/sec)   p_kst 1.432000e-01   p_cons 6.063000e-01   p_joint 1.642000e-01

Outputting figure to mutsig2_images.part000000000073/GPHN.3_2402_10000_0.1432_0.6063_0.1642.png
                gene_name: GPHN
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
GPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
KS ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
GPI   10000 perm   2 sec   (6080 perm/sec)   p_kst 7.900000e-03   p_cons 7.890000e-01   p_joint 4.350000e-02

Joint ci ratio: 2.717025e-01	ci left: 8.900643e-03	ci right 1.174443e-02	k: 205	n:20000
Cons ci ratio: 1.421593e-02	ci left: 7.860552e-01	ci right 7.973598e-01	k: 15835	n:20000
KS ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
GPI   20000 perm   4 sec   (5414 perm/sec)   p_kst 7.800000e-03   p_cons 7.917500e-01   p_joint 1.025000e-02

Joint ci ratio: 1.289114e-01	ci left: 2.796946e-02	ci right 3.185562e-02	k: 896	n:30000
Cons ci ratio: 1.167346e-02	ci left: 7.852119e-01	ci right 7.944652e-01	k: 23696	n:30000
KS ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
GPI   30000 perm   6 sec   (5150 perm/sec)   p_kst 7.766667e-03   p_cons 7.898667e-01   p_joint 2.986667e-02

Joint ci ratio: 1.174915e-01	ci left: 2.548209e-02	ci right 2.868706e-02	k: 1082	n:40000
Cons ci ratio: 1.008716e-02	ci left: 7.865791e-01	ci right 7.945787e-01	k: 31624	n:40000
KS ci ratio: 2.305558e-01	ci left: 6.347756e-03	ci right 8.024985e-03	k: 286	n:40000
GPI   40000 perm   8 sec   (4974 perm/sec)   p_kst 7.150000e-03   p_cons 7.906000e-01   p_joint 2.705000e-02

Joint ci ratio: 1.075953e-01	ci left: 2.446691e-02	ci right 2.726851e-02	k: 1292	n:50000
Cons ci ratio: 9.006411e-03	ci left: 7.875904e-01	ci right 7.947358e-01	k: 39559	n:50000
KS ci ratio: 2.049964e-01	ci left: 6.515609e-03	ci right 8.022448e-03	k: 362	n:50000
GPI   50000 perm   10 sec   (4837 perm/sec)   p_kst 7.240000e-03   p_cons 7.911800e-01   p_joint 2.584000e-02

Joint ci ratio: 1.124535e-01	ci left: 1.873264e-02	ci right 2.098081e-02	k: 1190	n:60000
Cons ci ratio: 8.211232e-03	ci left: 7.883277e-01	ci right 7.948441e-01	k: 47496	n:60000
KS ci ratio: 1.922240e-01	ci left: 6.221507e-03	ci right 7.560192e-03	k: 412	n:60000
GPI   60000 perm   13 sec   (4723 perm/sec)   p_kst 6.866667e-03   p_cons 7.916000e-01   p_joint 1.983333e-02

Joint ci ratio: 1.261802e-01	ci left: 1.274121e-02	ci right 1.447089e-02	k: 951	n:70000
Cons ci ratio: 7.610347e-03	ci left: 7.882129e-01	ci right 7.942486e-01	k: 55387	n:70000
KS ci ratio: 1.815731e-01	ci left: 6.013545e-03	ci right 7.227896e-03	k: 462	n:70000
GPI   70000 perm   15 sec   (4619 perm/sec)   p_kst 6.600000e-03   p_cons 7.912429e-01   p_joint 1.358571e-02

Joint ci ratio: 1.250975e-01	ci left: 1.136597e-02	ci right 1.289471e-02	k: 969	n:80000
Cons ci ratio: 7.114630e-03	ci left: 7.886054e-01	ci right 7.942485e-01	k: 63315	n:80000
KS ci ratio: 1.700312e-01	ci left: 6.038635e-03	ci right 7.172592e-03	k: 527	n:80000
GPI   80000 perm   18 sec   (4521 perm/sec)   p_kst 6.587500e-03   p_cons 7.914375e-01   p_joint 1.211250e-02

Joint ci ratio: 9.451182e-02	ci left: 1.786838e-02	ci right 1.965171e-02	k: 1687	n:90000
Cons ci ratio: 6.897494e-03	ci left: 7.793660e-01	ci right 7.847713e-01	k: 70387	n:90000
KS ci ratio: 1.448961e-01	ci left: 7.481892e-03	ci right 8.661257e-03	k: 725	n:90000
GPI   90000 perm   20 sec   (4433 perm/sec)   p_kst 8.055556e-03   p_cons 7.820778e-01   p_joint 1.874444e-02

Joint ci ratio: 9.074155e-02	ci left: 1.748803e-02	ci right 1.916007e-02	k: 1831	n:100000
Cons ci ratio: 6.545221e-03	ci left: 7.794177e-01	ci right 7.845459e-01	k: 78199	n:100000
KS ci ratio: 1.369197e-01	ci left: 7.573072e-03	ci right 8.695738e-03	k: 812	n:100000
GPI   100000 perm   23 sec   (4340 perm/sec)   p_kst 8.120000e-03   p_cons 7.819900e-01   p_joint 1.831000e-02

Joint ci ratio: 8.544939e-02	ci left: 1.796994e-02	ci right 1.958285e-02	k: 2064	n:110000
Cons ci ratio: 6.241605e-03	ci left: 7.794842e-01	ci right 7.843737e-01	k: 86013	n:110000
KS ci ratio: 1.313124e-01	ci left: 7.508397e-03	ci right 8.572333e-03	k: 883	n:110000
GPI   110000 perm   26 sec   (4249 perm/sec)   p_kst 8.027273e-03   p_cons 7.819364e-01   p_joint 1.876364e-02

Joint ci ratio: 1.021419e-01	ci left: 1.150530e-02	ci right 1.275178e-02	k: 1454	n:120000
Cons ci ratio: 5.968048e-03	ci left: 7.800378e-01	ci right 7.847153e-01	k: 93886	n:120000
KS ci ratio: 1.260099e-01	ci left: 7.495647e-03	ci right 8.511679e-03	k: 959	n:120000
GPI   120000 perm   29 sec   (4163 perm/sec)   p_kst 7.991667e-03   p_cons 7.823833e-01   p_joint 1.211667e-02

Joint ci ratio: 8.910460e-02	ci left: 1.401517e-02	ci right 1.532969e-02	k: 1906	n:130000
Cons ci ratio: 5.740628e-03	ci left: 7.797300e-01	ci right 7.842267e-01	k: 101658	n:130000
KS ci ratio: 1.215385e-01	ci left: 7.455749e-03	ci right 8.427931e-03	k: 1031	n:130000
GPI   130000 perm   32 sec   (4086 perm/sec)   p_kst 7.930769e-03   p_cons 7.819846e-01   p_joint 1.466154e-02

Joint ci ratio: 8.691506e-02	ci left: 1.369858e-02	ci right 1.495023e-02	k: 2004	n:140000
Cons ci ratio: 5.529819e-03	ci left: 7.799353e-01	ci right 7.842673e-01	k: 109495	n:140000
KS ci ratio: 1.182698e-01	ci left: 7.325026e-03	ci right 8.252677e-03	k: 1089	n:140000
GPI   140000 perm   35 sec   (4015 perm/sec)   p_kst 7.778571e-03   p_cons 7.821071e-01   p_joint 1.431429e-02

Joint ci ratio: 9.040108e-02	ci left: 1.182002e-02	ci right 1.294562e-02	k: 1856	n:150000
Cons ci ratio: 5.340543e-03	ci left: 7.801225e-01	ci right 7.843066e-01	k: 117333	n:150000
KS ci ratio: 1.145494e-01	ci left: 7.302710e-03	ci right 8.196475e-03	k: 1161	n:150000
GPI   150000 perm   38 sec   (3947 perm/sec)   p_kst 7.740000e-03   p_cons 7.822200e-01   p_joint 1.237333e-02

Joint ci ratio: 8.770551e-02	ci left: 1.179011e-02	ci right 1.287767e-02	k: 1972	n:160000
Cons ci ratio: 5.168511e-03	ci left: 7.803512e-01	ci right 7.844011e-01	k: 125181	n:160000
KS ci ratio: 1.113870e-01	ci left: 7.253199e-03	ci right 8.114785e-03	k: 1228	n:160000
GPI   160000 perm   41 sec   (3885 perm/sec)   p_kst 7.675000e-03   p_cons 7.823813e-01   p_joint 1.232500e-02

Joint ci ratio: 8.513441e-02	ci left: 1.179296e-02	ci right 1.284730e-02	k: 2093	n:170000
Cons ci ratio: 5.018853e-03	ci left: 7.800945e-01	ci right 7.840253e-01	k: 132951	n:170000
KS ci ratio: 1.079702e-01	ci left: 7.278503e-03	ci right 8.114888e-03	k: 1307	n:170000
GPI   170000 perm   44 sec   (3832 perm/sec)   p_kst 7.688235e-03   p_cons 7.820647e-01   p_joint 1.231176e-02

Joint ci ratio: 5.774018e-02	ci left: 2.424529e-02	ci right 2.569229e-02	k: 4493	n:180000
Cons ci ratio: 4.878453e-03	ci left: 7.800797e-01	ci right 7.839001e-01	k: 140759	n:180000
KS ci ratio: 1.049259e-01	ci left: 7.290533e-03	ci right 8.103221e-03	k: 1384	n:180000
GPI   180000 perm   48 sec   (3779 perm/sec)   p_kst 7.688889e-03   p_cons 7.819944e-01   p_joint 2.496111e-02

Joint ci ratio: 5.793110e-02	ci left: 2.284944e-02	ci right 2.421778e-02	k: 4470	n:190000
Cons ci ratio: 4.745988e-03	ci left: 7.803002e-01	ci right 7.840175e-01	k: 148611	n:190000
KS ci ratio: 1.018450e-01	ci left: 7.342632e-03	ci right 8.135656e-03	k: 1469	n:190000
GPI   190000 perm   51 sec   (3723 perm/sec)   p_kst 7.731579e-03   p_cons 7.821632e-01   p_joint 2.352632e-02

Joint ci ratio: 7.830571e-02	ci left: 1.189017e-02	ci right 1.286404e-02	k: 2474	n:200000
Cons ci ratio: 4.629253e-03	ci left: 7.800936e-01	ci right 7.837182e-01	k: 156382	n:200000
KS ci ratio: 9.902045e-02	ci left: 7.389835e-03	ci right 8.164534e-03	k: 1554	n:200000
GPI   200000 perm   55 sec   (3666 perm/sec)   p_kst 7.770000e-03   p_cons 7.819100e-01   p_joint 1.237000e-02

Outputting figure to mutsig2_images.part000000000073/GPI.3_1870_200000_0.00777_0.78191_0.01237.png
                gene_name: GPI
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.0078 
        ci_ks_bounds_left: 0.0074 
       ci_ks_bounds_right: 0.0082 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 71 percent done.
GPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
Cons ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
KS ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
GPN2   10000 perm   2 sec   (6657 perm/sec)   p_kst 2.272000e-01   p_cons 3.144000e-01   p_joint 3.561000e-01

Outputting figure to mutsig2_images.part000000000073/GPN2.3_953_10000_0.2272_0.3144_0.3561.png
                gene_name: GPN2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 73 percent done.
GPR124
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
Cons ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
GPR124   10000 perm   2 sec   (5342 perm/sec)   p_kst 1.277000e-01   p_cons 2.362000e-01   p_joint 3.510000e-01

Joint ci ratio: 5.556674e-02	ci left: 1.936837e-01	ci right 2.048038e-01	k: 3984	n:20000
Cons ci ratio: 5.155386e-02	ci left: 2.184354e-01	ci right 2.300448e-01	k: 4484	n:20000
KS ci ratio: 7.346958e-02	ci left: 1.200034e-01	ci right 1.292060e-01	k: 2491	n:20000
GPR124   20000 perm   4 sec   (4815 perm/sec)   p_kst 1.245500e-01   p_cons 2.242000e-01   p_joint 1.992000e-01

Outputting figure to mutsig2_images.part000000000073/GPR124.3_4072_20000_0.12455_0.2242_0.1992.png
                gene_name: GPR124
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
GPR151
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
KS ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
GPR151   10000 perm   1 sec   (6886 perm/sec)   p_kst 6.403000e-01   p_cons 7.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR151.3_1264_10000_0.6403_0.7541_1.png
                gene_name: GPR151
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
GPR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
GPR17   10000 perm   2 sec   (6412 perm/sec)   p_kst 1.383000e-01   p_cons 6.680000e-02   p_joint 7.370000e-02

Joint ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
Cons ci ratio: 1.022936e-01	ci left: 6.489067e-02	ci right 7.193544e-02	k: 1367	n:20000
KS ci ratio: 6.828811e-02	ci left: 1.365984e-01	ci right 1.463061e-01	k: 2828	n:20000
GPR17   20000 perm   4 sec   (5682 perm/sec)   p_kst 1.414000e-01   p_cons 6.835000e-02   p_joint 7.950000e-02

Joint ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
Cons ci ratio: 7.986470e-02	ci left: 7.135698e-02	ci right 7.732577e-02	k: 2229	n:30000
KS ci ratio: 5.541178e-02	ci left: 1.389908e-01	ci right 1.469452e-01	k: 4288	n:30000
GPR17   30000 perm   6 sec   (5410 perm/sec)   p_kst 1.429333e-01   p_cons 7.430000e-02   p_joint 5.640000e-02

Outputting figure to mutsig2_images.part000000000073/GPR17.3_1112_30000_0.14293_0.0743_0.0564.png
                gene_name: GPR17
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 79 percent done.
GPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194384e-03	ci left: 9.917226e-01	ci right 9.949800e-01	k: 9935	n:10000
Cons ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
GPD1   10000 perm   1 sec   (6729 perm/sec)   p_kst 2.709000e-01   p_cons 2.983000e-01   p_joint 9.935000e-01

Outputting figure to mutsig2_images.part000000000073/GPD1.2_1082_10000_0.2709_0.2983_0.9935.png
                gene_name: GPD1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
GPHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.274646e-01	ci left: 8.086735e-02	ci right 9.197496e-02	k: 863	n:10000
KS ci ratio: 7.847161e-02	ci left: 1.918044e-01	ci right 2.075710e-01	k: 1996	n:10000
GPHB5   10000 perm   1 sec   (7309 perm/sec)   p_kst 1.996000e-01   p_cons 8.630000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
KS ci ratio: 5.530689e-02	ci left: 1.951679e-01	ci right 2.063192e-01	k: 4014	n:20000
GPHB5   20000 perm   3 sec   (6395 perm/sec)   p_kst 2.007000e-01   p_cons 8.545000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPHB5.2_284_20000_0.2007_0.08545_1.png
                gene_name: GPHB5
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GPR107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
GPR107   10000 perm   2 sec   (6435 perm/sec)   p_kst 1.142000e-01   p_cons 4.100000e-02   p_joint 1.280000e-02

Joint ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
Cons ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
KS ci ratio: 7.926844e-02	ci left: 1.046148e-01	ci right 1.132993e-01	k: 2178	n:20000
GPR107   20000 perm   4 sec   (5704 perm/sec)   p_kst 1.089000e-01   p_cons 4.170000e-02   p_joint 3.085000e-02

Joint ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
Cons ci ratio: 1.187190e-01	ci left: 3.298122e-02	ci right 3.717611e-02	k: 1051	n:30000
KS ci ratio: 6.463962e-02	ci left: 1.056591e-01	ci right 1.127501e-01	k: 3275	n:30000
GPR107   30000 perm   6 sec   (5400 perm/sec)   p_kst 1.091667e-01   p_cons 3.503333e-02   p_joint 2.003333e-02

Joint ci ratio: 1.361600e-01	ci left: 1.891623e-02	ci right 2.170402e-02	k: 811	n:40000
Cons ci ratio: 1.024613e-01	ci left: 3.348849e-02	ci right 3.712938e-02	k: 1411	n:40000
KS ci ratio: 5.599412e-02	ci left: 1.060854e-01	ci right 1.122215e-01	k: 4365	n:40000
GPR107   40000 perm   8 sec   (5217 perm/sec)   p_kst 1.091250e-01   p_cons 3.527500e-02   p_joint 2.027500e-02

Joint ci ratio: 1.174860e-01	ci left: 2.049898e-02	ci right 2.307695e-02	k: 1088	n:50000
Cons ci ratio: 9.055963e-02	ci left: 3.448192e-02	ci right 3.777222e-02	k: 1805	n:50000
KS ci ratio: 5.019381e-02	ci left: 1.059845e-01	ci right 1.114610e-01	k: 5435	n:50000
GPR107   50000 perm   10 sec   (5067 perm/sec)   p_kst 1.087000e-01   p_cons 3.610000e-02   p_joint 2.176000e-02

Joint ci ratio: 1.069906e-01	ci left: 2.071130e-02	ci right 2.306860e-02	k: 1312	n:60000
Cons ci ratio: 8.247611e-02	ci left: 3.478489e-02	ci right 3.779351e-02	k: 2176	n:60000
KS ci ratio: 4.592803e-02	ci left: 1.057746e-01	ci right 1.107633e-01	k: 6495	n:60000
GPR107   60000 perm   12 sec   (4942 perm/sec)   p_kst 1.082500e-01   p_cons 3.626667e-02   p_joint 2.186667e-02

Joint ci ratio: 9.862169e-02	ci left: 2.098184e-02	ci right 2.317231e-02	k: 1544	n:70000
Cons ci ratio: 7.635553e-02	ci left: 3.489851e-02	ci right 3.768296e-02	k: 2539	n:70000
KS ci ratio: 4.267177e-02	ci left: 1.052853e-01	ci right 1.098901e-01	k: 7530	n:70000
GPR107   70000 perm   14 sec   (4833 perm/sec)   p_kst 1.075714e-01   p_cons 3.627143e-02   p_joint 2.205714e-02

Outputting figure to mutsig2_images.part000000000073/GPR107.2_1883_70000_0.10757_0.036271_0.022057.png
                gene_name: GPR107
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 84 percent done.
GPR108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
Cons ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KS ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
GPR108   10000 perm   2 sec   (6518 perm/sec)   p_kst 5.677000e-01   p_cons 4.919000e-01   p_joint 7.057000e-01

Outputting figure to mutsig2_images.part000000000073/GPR108.2_1704_10000_0.5677_0.4919_0.7057.png
                gene_name: GPR108
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 86 percent done.
GPR114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
KS ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
GPR114   10000 perm   1 sec   (6768 perm/sec)   p_kst 6.951000e-01   p_cons 8.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR114.2_1631_10000_0.6951_0.8152_1.png
                gene_name: GPR114
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GPR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
KS ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
GPR12   10000 perm   1 sec   (6757 perm/sec)   p_kst 9.912000e-01   p_cons 5.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR12.2_1009_10000_0.9912_0.5913_1.png
                gene_name: GPR12
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
GPR152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
Cons ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
KS ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
GPR152   10000 perm   1 sec   (6715 perm/sec)   p_kst 7.090000e-02   p_cons 5.770000e-02   p_joint 4.980000e-02

Joint ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
Cons ci ratio: 1.112983e-01	ci left: 5.514077e-02	ci right 6.168835e-02	k: 1167	n:20000
KS ci ratio: 1.021734e-01	ci left: 6.503709e-02	ci right 7.208897e-02	k: 1370	n:20000
GPR152   20000 perm   3 sec   (5913 perm/sec)   p_kst 6.850000e-02   p_cons 5.835000e-02   p_joint 2.130000e-02

Joint ci ratio: 1.405683e-01	ci left: 2.348806e-02	ci right 2.707135e-02	k: 757	n:30000
Cons ci ratio: 9.185370e-02	ci left: 5.459849e-02	ci right 5.988766e-02	k: 1716	n:30000
KS ci ratio: 8.283178e-02	ci left: 6.658209e-02	ci right 7.236829e-02	k: 2083	n:30000
GPR152   30000 perm   5 sec   (5614 perm/sec)   p_kst 6.943333e-02   p_cons 5.720000e-02   p_joint 2.523333e-02

Joint ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
Cons ci ratio: 7.972045e-02	ci left: 5.472318e-02	ci right 5.929140e-02	k: 2279	n:40000
KS ci ratio: 7.173006e-02	ci left: 6.697753e-02	ci right 7.198519e-02	k: 2778	n:40000
GPR152   40000 perm   7 sec   (5410 perm/sec)   p_kst 6.945000e-02   p_cons 5.697500e-02   p_joint 2.585000e-02

Joint ci ratio: 1.082851e-01	ci left: 2.415534e-02	ci right 2.694012e-02	k: 1276	n:50000
Cons ci ratio: 7.137070e-02	ci left: 5.486563e-02	ci right 5.894601e-02	k: 2844	n:50000
KS ci ratio: 6.381999e-02	ci left: 6.791651e-02	ci right 7.241354e-02	k: 3507	n:50000
GPR152   50000 perm   10 sec   (5247 perm/sec)   p_kst 7.014000e-02   p_cons 5.688000e-02   p_joint 2.552000e-02

Joint ci ratio: 9.659075e-02	ci left: 2.542471e-02	ci right 2.802134e-02	k: 1602	n:60000
Cons ci ratio: 6.508162e-02	ci left: 5.515803e-02	ci right 5.888496e-02	k: 3420	n:60000
KS ci ratio: 5.798296e-02	ci left: 6.872726e-02	ci right 7.284770e-02	k: 4246	n:60000
GPR152   60000 perm   12 sec   (5112 perm/sec)   p_kst 7.076667e-02   p_cons 5.700000e-02   p_joint 2.670000e-02

Outputting figure to mutsig2_images.part000000000073/GPR152.2_1417_60000_0.070767_0.057_0.0267.png
                gene_name: GPR152
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 91 percent done.
GPR162
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
Cons ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
KS ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
GPR162   10000 perm   2 sec   (6381 perm/sec)   p_kst 2.149000e-01   p_cons 7.803000e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000073/GPR162.2_1802_10000_0.2149_0.7803_0.4402.png
                gene_name: GPR162
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 93 percent done.
GPR172A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
Cons ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
KS ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
GPR172A   10000 perm   2 sec   (6571 perm/sec)   p_kst 5.090000e-01   p_cons 2.278000e-01   p_joint 2.294000e-01

Outputting figure to mutsig2_images.part000000000073/GPR172A.2_1354_10000_0.509_0.2278_0.2294.png
                gene_name: GPR172A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 95 percent done.
GPR18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 9.354076e-03	ci left: 9.415963e-01	ci right 9.505416e-01	k: 9462	n:10000
GPR18   10000 perm   1 sec   (6841 perm/sec)   p_kst 9.462000e-01   p_cons 2.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR18.2_1000_10000_0.9462_0.2277_1.png
                gene_name: GPR18
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GPR183
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
KS ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
GPR183   10000 perm   1 sec   (6931 perm/sec)   p_kst 5.552000e-01   p_cons 4.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR183.2_1090_10000_0.5552_0.4625_1.png
                gene_name: GPR183
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GPR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
Cons ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
GPR19   10000 perm   1 sec   (6882 perm/sec)   p_kst 2.556000e-01   p_cons 2.253000e-01   p_joint 9.209000e-01

Outputting figure to mutsig2_images.part000000000073/GPR19.2_1252_10000_0.2556_0.2253_0.9209.png
                gene_name: GPR19
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000073
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 73 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 4421998: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000074> was used as the working directory.
Started at Wed Oct 24 17:50:01 2012
Results reported at Wed Oct 24 18:26:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000074.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000074.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 74  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000074.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2224.02 sec.
    Max Memory :      5358 MB
    Max Swap   :      7828 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
74
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 74
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 74: processing genes 6605 - 6695
Calculating significance of each gene.
Using projection method.
6605	GPR32	1
6606	GPR34	3.706940e-01
6607	GPR35	1
6608	GPR37	4.300763e-01
6609	GPR37L1	8.455709e-01
6610	GPR39	6.838407e-01
6611	GPR4	6.821602e-01
6612	GPR45	8.468112e-01
6613	GPR50	9.525984e-01
6614	GPR52	1
6615	GPR55	7.119083e-02
6616	GPR56	3.992199e-01
6617	GPR6	1
6618	GPR61	1
6619	GPR62	1
6620	GPR63	4.229093e-01
6621	GPR64	6.268966e-01
In gene GPR65 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 1018    n = 1	mu =   6.02e-07
6622	GPR65	6.023515e-04
6623	GPR68	1
6624	GPR75	9.074520e-01
6625	GPR77	9.051530e-01
6626	GPR78	3.800896e-01
6627	GPR81	1
6628	GPR82	1
6629	GPR83	3.519645e-01
6630	GPR84	4.859925e-01
6631	GPR85	2.502025e-02
6632	GPR87	5.203021e-01
6633	GPR88	1
6634	GPR89A	1
6635	GPR89B	1
6636	GPR97	6.297300e-01
6637	GPR98	1.000000e+00
6638	GPRASP1	8.654504e-01
6639	GPRASP2	9.789315e-01
6640	GPRC5A	8.506419e-01
6641	GPRC5B	3.161340e-02
6642	GPRC5C	9.341494e-01
6643	GPRC5D	1
6644	GPRC6A	2.411636e-03
6645	GPRIN1	9.070935e-02
6646	GPRIN2	8.907248e-01
6647	GPRIN3	7.417146e-01
6648	GPS1	8.025124e-01
6649	GPS2	1
6650	GPSM1	5.989167e-01
6651	GPSM2	8.454697e-01
6652	GPSM3	1
6653	GPT	1
6654	GPT2	6.525818e-01
6655	GPX1	7.496081e-01
6656	GPX2	1
6657	GPX3	6.102069e-01
6658	GPX4	1
6659	GPX5	1.929250e-01
6660	GPX6	5.979424e-02
6661	GPX7	3.991427e-02
6662	GPX8	4.024043e-01
6663	GRAMD1A	8.772273e-01
6664	GRAMD1B	1
6665	GRAMD1C	6.179528e-01
6666	GRAMD2	1
6667	GRAMD3	9.033196e-01
6668	GRAMD4	6.745050e-01
6669	GRAP	1
6670	GRAP2	7.490014e-02
6671	GRASP	1
6672	GRB10	7.518395e-01
6673	GRB14	1
6674	GRB2	4.768474e-01
6675	GRB7	7.558296e-01
6676	GREB1	9.999919e-01
6677	GREM1	6.614499e-01
6678	GREM2	9.766493e-02
6679	GRHL1	4.246524e-01
6680	GRHL2	1
6681	GRHL3	9.392738e-01
6682	GRHPR	8.633872e-01
In gene GRIA1 the following bins exceed PROBCAP:
    LUAD-50-5055-TP	categ 6	N = 2904    n = 1	mu =   3.35e-08
6683	GRIA1	2.953023e-01
In gene GRIA2 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 2831    n = 1	mu =   4.02e-07
6684	GRIA2	4.439945e-01
6685	GRIA3	1.470765e-01
6686	GRIA4	8.574819e-02
6687	GRID1	9.943795e-01
6688	GRID2	6.480130e-01
6689	GRIK1	9.293531e-01
6690	GRIK2	2.743173e-02
6691	GRIK3	9.744567e-01
6692	GRIK4	1
6693	GRIK5	3.755260e-01
6694	GRIN1	1
6695	GRIN2A	1
Done

Running MutSig 2:
Scatter job 74: processing genes 6605 - 6695
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRIN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
Cons ci ratio: 2.930814e-02	ci left: 6.319101e-01	ci right 6.508075e-01	k: 6414	n:10000
KS ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
GRIN2A   10000 perm   3 sec   (3730 perm/sec)   p_kst 4.215000e-01   p_cons 6.414000e-01   p_joint 4.935000e-01

Outputting figure to mutsig2_images.part000000000074/GRIN2A.26_4443_10000_0.4215_0.6414_0.4935.png
                gene_name: GRIN2A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 2 percent done.
GPR98
Processing conservation and coverage...
51% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
Cons ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
KS ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
GPR98   10000 perm   4 sec   (2265 perm/sec)   p_kst 5.045000e-01   p_cons 7.822000e-01   p_joint 6.673000e-01

Outputting figure to mutsig2_images.part000000000074/GPR98.24_19281_10000_0.5045_0.7822_0.6673.png
                gene_name: GPR98
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 3 percent done.
GRID2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
Cons ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
KS ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
GRID2   10000 perm   2 sec   (4364 perm/sec)   p_kst 5.630000e-02   p_cons 9.870000e-01   p_joint 1.040000e-01

Joint ci ratio: 8.017988e-02	ci left: 1.024537e-01	ci right 1.110610e-01	k: 2134	n:20000
Cons ci ratio: 3.130799e-03	ci left: 9.858093e-01	ci right 9.889466e-01	k: 19749	n:20000
KS ci ratio: 1.145634e-01	ci left: 5.212349e-02	ci right 5.850656e-02	k: 1105	n:20000
GRID2   20000 perm   5 sec   (4017 perm/sec)   p_kst 5.525000e-02   p_cons 9.874500e-01   p_joint 1.067000e-01

Joint ci ratio: 6.536993e-02	ci left: 1.035236e-01	ci right 1.105527e-01	k: 3210	n:30000
Cons ci ratio: 2.390296e-03	ci left: 9.877545e-01	ci right 9.901494e-01	k: 29670	n:30000
KS ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
GRID2   30000 perm   8 sec   (3711 perm/sec)   p_kst 5.423333e-02   p_cons 9.890000e-01   p_joint 1.070000e-01

Outputting figure to mutsig2_images.part000000000074/GRID2.21_3087_30000_0.054233_0.989_0.107.png
                gene_name: GRID2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 5 percent done.
GRIK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
Cons ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
KS ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
GRIK2   10000 perm   2 sec   (4332 perm/sec)   p_kst 7.254000e-01   p_cons 4.080000e-02   p_joint 1.968000e-01

Joint ci ratio: 7.511428e-02	ci left: 1.153301e-01	ci right 1.243808e-01	k: 2396	n:20000
Cons ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
KS ci ratio: 1.680799e-02	ci left: 7.249471e-01	ci right 7.372856e-01	k: 14623	n:20000
GRIK2   20000 perm   5 sec   (3774 perm/sec)   p_kst 7.311500e-01   p_cons 4.060000e-02   p_joint 1.198000e-01

Joint ci ratio: 5.917698e-02	ci left: 1.238111e-01	ci right 1.313945e-01	k: 3827	n:30000
Cons ci ratio: 1.110656e-01	ci left: 3.764831e-02	ci right 4.210802e-02	k: 1195	n:30000
KS ci ratio: 1.368361e-02	ci left: 7.272508e-01	ci right 7.373042e-01	k: 21969	n:30000
GRIK2   30000 perm   8 sec   (3602 perm/sec)   p_kst 7.323000e-01   p_cons 3.983333e-02   p_joint 1.275667e-01

Joint ci ratio: 5.094049e-02	ci left: 1.256554e-01	ci right 1.322485e-01	k: 5157	n:40000
Cons ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
KS ci ratio: 1.189421e-02	ci left: 7.264744e-01	ci right 7.351920e-01	k: 29234	n:40000
GRIK2   40000 perm   11 sec   (3557 perm/sec)   p_kst 7.308500e-01   p_cons 4.015000e-02   p_joint 1.289250e-01

Outputting figure to mutsig2_images.part000000000074/GRIK2.19_2964_40000_0.73085_0.04015_0.12893.png
                gene_name: GRIK2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 6 percent done.
GPRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
Cons ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
KS ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
GPRC6A   10000 perm   2 sec   (4012 perm/sec)   p_kst 3.477000e-01   p_cons 3.927000e-01   p_joint 4.153000e-01

Outputting figure to mutsig2_images.part000000000074/GPRC6A.15_2805_10000_0.3477_0.3927_0.4153.png
                gene_name: GPRC6A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 8 percent done.
GRIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
GRIA2   10000 perm   2 sec   (4206 perm/sec)   p_kst 6.967000e-01   p_cons 2.746000e-01   p_joint 5.345000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA2.15_2831_10000_0.6967_0.2746_0.5345.png
                gene_name: GRIA2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 9 percent done.
GREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
Cons ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
KS ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
GREB1   10000 perm   3 sec   (3835 perm/sec)   p_kst 1.692000e-01   p_cons 4.428000e-01   p_joint 2.290000e-01

Outputting figure to mutsig2_images.part000000000074/GREB1.14_6086_10000_0.1692_0.4428_0.229.png
                gene_name: GREB1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
GRID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
GRID1   10000 perm   2 sec   (4534 perm/sec)   p_kst 3.140000e-02   p_cons 7.683000e-01   p_joint 6.490000e-02

Joint ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
Cons ci ratio: 1.561273e-02	ci left: 7.531615e-01	ci right 7.650631e-01	k: 15183	n:20000
KS ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
GRID1   20000 perm   5 sec   (4131 perm/sec)   p_kst 2.715000e-02   p_cons 7.591500e-01   p_joint 7.190000e-02

Joint ci ratio: 8.564803e-02	ci left: 6.246456e-02	ci right 6.808665e-02	k: 1957	n:30000
Cons ci ratio: 1.194374e-02	ci left: 7.774519e-01	ci right 7.868267e-01	k: 23465	n:30000
KS ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
GRID1   30000 perm   8 sec   (3943 perm/sec)   p_kst 2.800000e-02   p_cons 7.821667e-01   p_joint 6.523333e-02

Joint ci ratio: 7.305237e-02	ci left: 6.469170e-02	ci right 6.962137e-02	k: 2685	n:40000
Cons ci ratio: 1.092364e-02	ci left: 7.588012e-01	ci right 7.671606e-01	k: 30520	n:40000
KS ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
GRID1   40000 perm   10 sec   (3842 perm/sec)   p_kst 2.865000e-02   p_cons 7.630000e-01   p_joint 6.712500e-02

Joint ci ratio: 6.549190e-02	ci left: 6.466612e-02	ci right 6.906433e-02	k: 3342	n:50000
Cons ci ratio: 9.843328e-03	ci left: 7.565331e-01	ci right 7.640367e-01	k: 38015	n:50000
KS ci ratio: 1.026862e-01	ci left: 2.686391e-02	ci right 2.979119e-02	k: 1415	n:50000
GRID1   50000 perm   13 sec   (3769 perm/sec)   p_kst 2.830000e-02   p_cons 7.603000e-01   p_joint 6.684000e-02

Joint ci ratio: 6.372952e-02	ci left: 5.742317e-02	ci right 6.121959e-02	k: 3558	n:60000
Cons ci ratio: 9.016913e-03	ci left: 7.555905e-01	ci right 7.624511e-01	k: 45542	n:60000
KS ci ratio: 9.380188e-02	ci left: 2.695507e-02	ci right 2.962415e-02	k: 1696	n:60000
GRID1   60000 perm   16 sec   (3705 perm/sec)   p_kst 2.826667e-02   p_cons 7.590333e-01   p_joint 5.930000e-02

Outputting figure to mutsig2_images.part000000000074/GRID1.14_3094_60000_0.028267_0.75903_0.0593.png
                gene_name: GRID1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 12 percent done.
GRIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
Cons ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
KS ci ratio: 2.555112e-02	ci left: 6.927260e-01	ci right 7.107564e-01	k: 7018	n:10000
GRIA1   10000 perm   2 sec   (4457 perm/sec)   p_kst 7.018000e-01   p_cons 8.944000e-01   p_joint 9.204000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA1.12_2904_10000_0.7018_0.8944_0.9204.png
                gene_name: GRIA1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 14 percent done.
GPRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
Cons ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
GPRIN1   10000 perm   2 sec   (5129 perm/sec)   p_kst 4.847000e-01   p_cons 2.015000e-01   p_joint 3.302000e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN1.11_3031_10000_0.4847_0.2015_0.3302.png
                gene_name: GPRIN1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
GRIA3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
GRIA3   10000 perm   2 sec   (4668 perm/sec)   p_kst 8.812000e-01   p_cons 5.507000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRIA3.10_2864_10000_0.8812_0.5507_1.png
                gene_name: GRIA3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
GRIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
Cons ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
KS ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
GRIK1   10000 perm   2 sec   (4864 perm/sec)   p_kst 4.420000e-02   p_cons 5.915000e-01   p_joint 1.099000e-01

Joint ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
Cons ci ratio: 2.299568e-02	ci left: 5.854516e-01	ci right 5.991216e-01	k: 11846	n:20000
KS ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
GRIK1   20000 perm   5 sec   (4388 perm/sec)   p_kst 4.135000e-02   p_cons 5.923000e-01   p_joint 7.075000e-02

Joint ci ratio: 7.913862e-02	ci left: 7.260038e-02	ci right 7.861545e-02	k: 2267	n:30000
Cons ci ratio: 1.877625e-02	ci left: 5.867139e-01	ci right 5.978682e-01	k: 17769	n:30000
KS ci ratio: 1.077757e-01	ci left: 3.995277e-02	ci right 4.453642e-02	k: 1266	n:30000
GRIK1   30000 perm   7 sec   (4177 perm/sec)   p_kst 4.220000e-02   p_cons 5.923000e-01   p_joint 7.556667e-02

Joint ci ratio: 5.694291e-02	ci left: 1.029007e-01	ci right 1.089567e-01	k: 4236	n:40000
Cons ci ratio: 1.642890e-02	ci left: 5.824817e-01	ci right 5.921556e-01	k: 23493	n:40000
KS ci ratio: 9.210094e-02	ci left: 4.132614e-02	ci right 4.534049e-02	k: 1732	n:40000
GRIK1   40000 perm   10 sec   (4076 perm/sec)   p_kst 4.330000e-02   p_cons 5.873250e-01   p_joint 1.059000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK1.11_2985_40000_0.0433_0.58732_0.1059.png
                gene_name: GRIK1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
GRIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
KS ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
GRIK3   10000 perm   2 sec   (4380 perm/sec)   p_kst 1.963000e-01   p_cons 2.134000e-01   p_joint 2.372000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK3.10_2824_10000_0.1963_0.2134_0.2372.png
                gene_name: GRIK3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 20 percent done.
GRIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
Cons ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
GRIA4   10000 perm   2 sec   (4039 perm/sec)   p_kst 2.057000e-01   p_cons 2.919000e-01   p_joint 2.132000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA4.9_3040_10000_0.2057_0.2919_0.2132.png
                gene_name: GRIA4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 22 percent done.
GPR65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
KS ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
GPR65   10000 perm   2 sec   (5600 perm/sec)   p_kst 8.395000e-01   p_cons 9.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR65.8_1018_10000_0.8395_0.9577_1.png
                gene_name: GPR65
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
GPR85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
KS ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
GPR85   10000 perm   2 sec   (5129 perm/sec)   p_kst 3.740000e-02   p_cons 7.414000e-01   p_joint 7.270000e-02

Joint ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
Cons ci ratio: 1.625282e-02	ci left: 7.380426e-01	ci right 7.501864e-01	k: 14883	n:20000
KS ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
GPR85   20000 perm   4 sec   (4780 perm/sec)   p_kst 3.760000e-02   p_cons 7.441500e-01   p_joint 5.405000e-02

Joint ci ratio: 9.239720e-02	ci left: 5.397893e-02	ci right 5.924068e-02	k: 1697	n:30000
Cons ci ratio: 1.320131e-02	ci left: 7.411681e-01	ci right 7.510509e-01	k: 22384	n:30000
KS ci ratio: 1.164438e-01	ci left: 3.427666e-02	ci right 3.854706e-02	k: 1091	n:30000
GPR85   30000 perm   6 sec   (4647 perm/sec)   p_kst 3.636667e-02   p_cons 7.461333e-01   p_joint 5.656667e-02

Joint ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
Cons ci ratio: 1.151216e-02	ci left: 7.391903e-01	ci right 7.477743e-01	k: 29740	n:40000
KS ci ratio: 1.004506e-01	ci left: 3.482981e-02	ci right 3.853785e-02	k: 1466	n:40000
GPR85   40000 perm   9 sec   (4516 perm/sec)   p_kst 3.665000e-02   p_cons 7.435000e-01   p_joint 4.530000e-02

Joint ci ratio: 8.055333e-02	ci left: 4.339554e-02	ci right 4.705750e-02	k: 2260	n:50000
Cons ci ratio: 1.028492e-02	ci left: 7.400903e-01	ci right 7.477614e-01	k: 37197	n:50000
KS ci ratio: 9.004364e-02	ci left: 3.487321e-02	ci right 3.818088e-02	k: 1825	n:50000
GPR85   50000 perm   11 sec   (4418 perm/sec)   p_kst 3.650000e-02   p_cons 7.439400e-01   p_joint 4.520000e-02

Outputting figure to mutsig2_images.part000000000074/GPR85.8_1117_50000_0.0365_0.74394_0.0452.png
                gene_name: GPR85
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 25 percent done.
GPRASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
Cons ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KS ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
GPRASP1   10000 perm   2 sec   (4679 perm/sec)   p_kst 4.765000e-01   p_cons 1.142000e-01   p_joint 2.851000e-01

Joint ci ratio: 4.632295e-02	ci left: 2.575036e-01	ci right 2.697652e-01	k: 5272	n:20000
Cons ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
KS ci ratio: 2.911528e-02	ci left: 4.684579e-01	ci right 4.823493e-01	k: 9508	n:20000
GPRASP1   20000 perm   5 sec   (4341 perm/sec)   p_kst 4.754000e-01   p_cons 1.186500e-01   p_joint 2.636000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP1.8_4192_20000_0.4754_0.11865_0.2636.png
                gene_name: GPRASP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 27 percent done.
GRIK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
GRIK4   10000 perm   2 sec   (4593 perm/sec)   p_kst 6.946000e-01   p_cons 6.428000e-01   p_joint 9.089000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK4.8_2947_10000_0.6946_0.6428_0.9089.png
                gene_name: GRIK4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 28 percent done.
GPR32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
GPR32   10000 perm   2 sec   (5930 perm/sec)   p_kst 4.924000e-01   p_cons 7.455000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR32.7_1074_10000_0.4924_0.7455_1.png
                gene_name: GPR32
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
GPR50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
KS ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
GPR50   10000 perm   2 sec   (5225 perm/sec)   p_kst 6.452000e-01   p_cons 4.343000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR50.7_1862_10000_0.6452_0.4343_1.png
                gene_name: GPR50
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
GPR55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
Cons ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
KS ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
GPR55   10000 perm   2 sec   (5842 perm/sec)   p_kst 2.620000e-01   p_cons 2.658000e-01   p_joint 3.158000e-01

Outputting figure to mutsig2_images.part000000000074/GPR55.7_964_10000_0.262_0.2658_0.3158.png
                gene_name: GPR55
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
GPR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
Cons ci ratio: 1.818042e-02	ci left: 8.153757e-01	ci right 8.304357e-01	k: 8230	n:10000
KS ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
GPR64   10000 perm   2 sec   (5115 perm/sec)   p_kst 1.161000e-01   p_cons 8.230000e-01   p_joint 2.270000e-01

Joint ci ratio: 4.936573e-02	ci left: 2.337472e-01	ci right 2.456286e-01	k: 4793	n:20000
Cons ci ratio: 1.275567e-02	ci left: 8.199148e-01	ci right 8.304905e-01	k: 16505	n:20000
KS ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
GPR64   20000 perm   4 sec   (4604 perm/sec)   p_kst 1.195500e-01   p_cons 8.252500e-01   p_joint 2.396500e-01

Outputting figure to mutsig2_images.part000000000074/GPR64.7_3162_20000_0.11955_0.82525_0.23965.png
                gene_name: GPR64
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 34 percent done.
GPRC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
Cons ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
GPRC5B   10000 perm   2 sec   (5862 perm/sec)   p_kst 1.235000e-01   p_cons 3.663000e-01   p_joint 1.623000e-01

Joint ci ratio: 6.510390e-02	ci left: 1.484312e-01	ci right 1.584697e-01	k: 3068	n:20000
Cons ci ratio: 3.669900e-02	ci left: 3.565302e-01	ci right 3.699096e-01	k: 7264	n:20000
KS ci ratio: 7.479556e-02	ci left: 1.162154e-01	ci right 1.252952e-01	k: 2414	n:20000
GPRC5B   20000 perm   4 sec   (5138 perm/sec)   p_kst 1.207000e-01   p_cons 3.632000e-01   p_joint 1.534000e-01

Outputting figure to mutsig2_images.part000000000074/GPRC5B.7_1224_20000_0.1207_0.3632_0.1534.png
                gene_name: GPRC5B
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 36 percent done.
GRB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
Cons ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
KS ci ratio: 3.803565e-02	ci left: 5.051514e-01	ci right 5.248398e-01	k: 5150	n:10000
GRB10   10000 perm   2 sec   (5173 perm/sec)   p_kst 5.150000e-01   p_cons 6.650000e-01   p_joint 7.464000e-01

Outputting figure to mutsig2_images.part000000000074/GRB10.7_1849_10000_0.515_0.665_0.7464.png
                gene_name: GRB10
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 38 percent done.
GPR56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
KS ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
GPR56   10000 perm   2 sec   (5401 perm/sec)   p_kst 3.520000e-02   p_cons 1.850000e-01   p_joint 3.920000e-02

Joint ci ratio: 1.265892e-01	ci left: 4.284699e-02	ci right 4.868599e-02	k: 914	n:20000
Cons ci ratio: 5.633580e-02	ci left: 1.893803e-01	ci right 2.004086e-01	k: 3897	n:20000
KS ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
GPR56   20000 perm   4 sec   (4831 perm/sec)   p_kst 3.370000e-02   p_cons 1.948500e-01   p_joint 4.570000e-02

Joint ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
Cons ci ratio: 4.602752e-02	ci left: 1.901993e-01	ci right 1.991933e-01	k: 5840	n:30000
KS ci ratio: 1.208790e-01	ci left: 3.181601e-02	ci right 3.594157e-02	k: 1015	n:30000
GPR56   30000 perm   6 sec   (4640 perm/sec)   p_kst 3.383333e-02   p_cons 1.946667e-01   p_joint 3.473333e-02

Joint ci ratio: 8.454720e-02	ci left: 4.883972e-02	ci right 5.317576e-02	k: 2039	n:40000
Cons ci ratio: 4.003672e-02	ci left: 1.894401e-01	ci right 1.972045e-01	k: 7732	n:40000
KS ci ratio: 1.056026e-01	ci left: 3.153881e-02	ci right 3.507936e-02	k: 1331	n:40000
GPR56   40000 perm   9 sec   (4512 perm/sec)   p_kst 3.327500e-02   p_cons 1.933000e-01   p_joint 5.097500e-02

Joint ci ratio: 6.718766e-02	ci left: 6.159444e-02	ci right 6.589638e-02	k: 3186	n:50000
Cons ci ratio: 3.678548e-02	ci left: 1.816644e-01	ci right 1.884922e-01	k: 9253	n:50000
KS ci ratio: 9.433693e-02	ci left: 3.180313e-02	ci right 3.497135e-02	k: 1668	n:50000
GPR56   50000 perm   11 sec   (4386 perm/sec)   p_kst 3.336000e-02   p_cons 1.850600e-01   p_joint 6.372000e-02

Outputting figure to mutsig2_images.part000000000074/GPR56.6_2149_50000_0.03336_0.18506_0.06372.png
                gene_name: GPR56
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 39 percent done.
GPRASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
Cons ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
KS ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
GPRASP2   10000 perm   2 sec   (5430 perm/sec)   p_kst 1.263000e-01   p_cons 9.741000e-01   p_joint 4.902000e-01

Joint ci ratio: 4.153314e-02	ci left: 3.017044e-01	ci right 3.145514e-01	k: 6162	n:20000
Cons ci ratio: 4.514749e-03	ci left: 9.719077e-01	ci right 9.763530e-01	k: 19484	n:20000
KS ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
GPRASP2   20000 perm   4 sec   (4857 perm/sec)   p_kst 1.257500e-01   p_cons 9.742000e-01   p_joint 3.081000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP2.6_2521_20000_0.12575_0.9742_0.3081.png
                gene_name: GPRASP2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 41 percent done.
GRAMD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
GRAMD1B   10000 perm   2 sec   (5489 perm/sec)   p_kst 4.249000e-01   p_cons 6.680000e-02   p_joint 1.936000e-01

Joint ci ratio: 5.187451e-02	ci left: 2.163056e-01	ci right 2.278753e-01	k: 4441	n:20000
Cons ci ratio: 1.058244e-01	ci left: 6.079280e-02	ci right 6.763456e-02	k: 1283	n:20000
KS ci ratio: 3.107844e-02	ci left: 4.360994e-01	ci right 4.499172e-01	k: 8860	n:20000
GRAMD1B   20000 perm   4 sec   (4908 perm/sec)   p_kst 4.430000e-01   p_cons 6.415000e-02   p_joint 2.220500e-01

Joint ci ratio: 4.748128e-02	ci left: 1.807191e-01	ci right 1.895419e-01	k: 5553	n:30000
Cons ci ratio: 8.595369e-02	ci left: 6.203992e-02	ci right 6.764471e-02	k: 1944	n:30000
KS ci ratio: 2.532995e-02	ci left: 4.382668e-01	ci right 4.495441e-01	k: 13317	n:30000
GRAMD1B   30000 perm   6 sec   (4672 perm/sec)   p_kst 4.439000e-01   p_cons 6.480000e-02   p_joint 1.851000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD1B.6_2297_30000_0.4439_0.0648_0.1851.png
                gene_name: GRAMD1B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
GRAMD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
Cons ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
KS ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
GRAMD1C   10000 perm   2 sec   (5300 perm/sec)   p_kst 9.860000e-02   p_cons 6.314000e-01   p_joint 1.941000e-01

Joint ci ratio: 5.928154e-02	ci left: 1.740549e-01	ci right 1.847384e-01	k: 3587	n:20000
Cons ci ratio: 2.055178e-02	ci left: 6.385736e-01	ci right 6.518842e-01	k: 12905	n:20000
KS ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
GRAMD1C   20000 perm   4 sec   (4544 perm/sec)   p_kst 9.820000e-02   p_cons 6.452500e-01   p_joint 1.793500e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD1C.6_2061_20000_0.0982_0.64525_0.17935.png
                gene_name: GRAMD1C
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 44 percent done.
GRHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
Cons ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
KS ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
GRHL1   10000 perm   2 sec   (5319 perm/sec)   p_kst 6.014000e-01   p_cons 2.820000e-01   p_joint 4.828000e-01

Outputting figure to mutsig2_images.part000000000074/GRHL1.6_1921_10000_0.6014_0.282_0.4828.png
                gene_name: GRHL1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 45 percent done.
GRIK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
Cons ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
KS ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
GRIK5   10000 perm   2 sec   (4498 perm/sec)   p_kst 4.520000e-01   p_cons 4.534000e-01   p_joint 6.204000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK5.6_3019_10000_0.452_0.4534_0.6204.png
                gene_name: GRIK5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 47 percent done.
GPR37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
Cons ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
KS ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
GPR37   10000 perm   2 sec   (5570 perm/sec)   p_kst 9.756000e-01   p_cons 4.015000e-01   p_joint 9.049000e-01

Outputting figure to mutsig2_images.part000000000074/GPR37.5_1850_10000_0.9756_0.4015_0.9049.png
                gene_name: GPR37
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 48 percent done.
GPR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
Cons ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
KS ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
GPR4   10000 perm   2 sec   (5288 perm/sec)   p_kst 7.364000e-01   p_cons 5.003000e-01   p_joint 6.467000e-01

Outputting figure to mutsig2_images.part000000000074/GPR4.5_1093_10000_0.7364_0.5003_0.6467.png
                gene_name: GPR4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 50 percent done.
GPRIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
GPRIN3   10000 perm   2 sec   (5249 perm/sec)   p_kst 2.980000e-02   p_cons 6.000000e-04   p_joint 1.010000e-02

Joint ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
GPRIN3   20000 perm   4 sec   (4784 perm/sec)   p_kst 2.980000e-02   p_cons 8.500000e-04   p_joint 4.300000e-03

Joint ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
Cons ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
KS ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
GPRIN3   30000 perm   7 sec   (4548 perm/sec)   p_kst 3.003333e-02   p_cons 7.666667e-04   p_joint 3.466667e-03

Joint ci ratio: 4.324423e-01	ci left: 1.608458e-03	ci right 2.516271e-03	k: 81	n:40000
Cons ci ratio: 6.926788e-01	ci left: 5.266337e-04	ci right 1.099872e-03	k: 31	n:40000
KS ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
GPRIN3   40000 perm   9 sec   (4423 perm/sec)   p_kst 2.912500e-02   p_cons 7.750000e-04   p_joint 2.025000e-03

Joint ci ratio: 4.175014e-01	ci left: 1.393896e-03	ci right 2.145847e-03	k: 87	n:50000
Cons ci ratio: 6.530916e-01	ci left: 4.876226e-04	ci right 9.733974e-04	k: 35	n:50000
KS ci ratio: 1.017653e-01	ci left: 2.735147e-02	ci right 3.030357e-02	k: 1440	n:50000
GPRIN3   50000 perm   12 sec   (4344 perm/sec)   p_kst 2.880000e-02   p_cons 7.000000e-04   p_joint 1.740000e-03

Joint ci ratio: 4.248789e-01	ci left: 1.116844e-03	ci right 1.733006e-03	k: 84	n:60000
Cons ci ratio: 5.907406e-01	ci left: 5.187023e-04	ci right 9.652253e-04	k: 43	n:60000
KS ci ratio: 9.340612e-02	ci left: 2.718309e-02	ci right 2.986278e-02	k: 1710	n:60000
GPRIN3   60000 perm   14 sec   (4237 perm/sec)   p_kst 2.850000e-02   p_cons 7.166667e-04   p_joint 1.400000e-03

Joint ci ratio: 4.523968e-01	ci left: 8.301729e-04	ci right 1.326967e-03	k: 74	n:70000
Cons ci ratio: 5.382457e-01	ci left: 5.548495e-04	ci right 9.740456e-04	k: 52	n:70000
KS ci ratio: 8.652571e-02	ci left: 2.725180e-02	ci right 2.973035e-02	k: 1993	n:70000
GPRIN3   70000 perm   17 sec   (4155 perm/sec)   p_kst 2.847143e-02   p_cons 7.428571e-04   p_joint 1.057143e-03

Joint ci ratio: 4.300500e-01	ci left: 8.152934e-04	ci right 1.272138e-03	k: 82	n:80000
Cons ci ratio: 5.145314e-01	ci left: 5.396838e-04	ci right 9.230292e-04	k: 57	n:80000
KS ci ratio: 8.084361e-02	ci left: 2.739459e-02	ci right 2.971477e-02	k: 2283	n:80000
GPRIN3   80000 perm   20 sec   (4071 perm/sec)   p_kst 2.853750e-02   p_cons 7.125000e-04   p_joint 1.025000e-03

Joint ci ratio: 4.300751e-01	ci left: 7.246973e-04	ci right 1.130805e-03	k: 82	n:90000
Cons ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
KS ci ratio: 7.765519e-02	ci left: 2.646309e-02	ci right 2.861196e-02	k: 2477	n:90000
GPRIN3   90000 perm   22 sec   (4002 perm/sec)   p_kst 2.752222e-02   p_cons 7.555556e-04   p_joint 9.111111e-04

Joint ci ratio: 2.233814e-01	ci left: 2.727155e-03	ci right 3.422163e-03	k: 306	n:100000
Cons ci ratio: 4.465512e-01	ci left: 5.988388e-04	ci right 9.511624e-04	k: 76	n:100000
KS ci ratio: 7.349656e-02	ci left: 2.664245e-02	ci right 2.868507e-02	k: 2765	n:100000
GPRIN3   100000 perm   25 sec   (3935 perm/sec)   p_kst 2.765000e-02   p_cons 7.600000e-04   p_joint 3.060000e-03

Joint ci ratio: 2.167858e-01	ci left: 2.642426e-03	ci right 3.293309e-03	k: 325	n:110000
Cons ci ratio: 4.408741e-01	ci left: 5.605460e-04	ci right 8.848997e-04	k: 78	n:110000
KS ci ratio: 7.000057e-02	ci left: 2.674704e-02	ci right 2.869615e-02	k: 3048	n:110000
GPRIN3   110000 perm   28 sec   (3874 perm/sec)   p_kst 2.770909e-02   p_cons 7.090909e-04   p_joint 2.954545e-03

Joint ci ratio: 2.126034e-01	ci left: 2.524715e-03	ci right 3.133040e-03	k: 338	n:120000
Cons ci ratio: 4.225512e-01	ci left: 5.658295e-04	ci right 8.757918e-04	k: 85	n:120000
KS ci ratio: 6.713662e-02	ci left: 2.669675e-02	ci right 2.855950e-02	k: 3314	n:120000
GPRIN3   120000 perm   32 sec   (3808 perm/sec)   p_kst 2.761667e-02   p_cons 7.083333e-04   p_joint 2.816667e-03

Joint ci ratio: 2.077669e-01	ci left: 2.447095e-03	ci right 3.021597e-03	k: 354	n:130000
Cons ci ratio: 4.177303e-01	ci left: 5.360601e-04	ci right 8.254292e-04	k: 87	n:130000
KS ci ratio: 6.450511e-02	ci left: 2.673131e-02	ci right 2.852062e-02	k: 3590	n:130000
GPRIN3   130000 perm   35 sec   (3738 perm/sec)   p_kst 2.761538e-02   p_cons 6.692308e-04   p_joint 2.723077e-03

Joint ci ratio: 2.086731e-01	ci left: 2.251967e-03	ci right 2.783258e-03	k: 351	n:140000
Cons ci ratio: 4.041799e-01	ci left: 5.361967e-04	ci right 8.137340e-04	k: 93	n:140000
KS ci ratio: 6.219369e-02	ci left: 2.673401e-02	ci right 2.845706e-02	k: 3862	n:140000
GPRIN3   140000 perm   38 sec   (3672 perm/sec)   p_kst 2.758571e-02   p_cons 6.642857e-04   p_joint 2.507143e-03

Joint ci ratio: 2.032637e-01	ci left: 2.221967e-03	ci right 2.730903e-03	k: 370	n:150000
Cons ci ratio: 3.518797e-01	ci left: 6.815451e-04	ci right 9.782986e-04	k: 123	n:150000
KS ci ratio: 6.012165e-02	ci left: 2.673078e-02	ci right 2.839422e-02	k: 4133	n:150000
GPRIN3   150000 perm   41 sec   (3622 perm/sec)   p_kst 2.755333e-02   p_cons 8.200000e-04   p_joint 2.466667e-03

Joint ci ratio: 1.977466e-01	ci left: 2.207753e-03	ci right 2.698054e-03	k: 391	n:160000
Cons ci ratio: 3.410504e-01	ci left: 6.845989e-04	ci right 9.714880e-04	k: 131	n:160000
KS ci ratio: 5.810153e-02	ci left: 2.685818e-02	ci right 2.847150e-02	k: 4425	n:160000
GPRIN3   160000 perm   45 sec   (3553 perm/sec)   p_kst 2.765625e-02   p_cons 8.187500e-04   p_joint 2.443750e-03

Joint ci ratio: 1.917271e-01	ci left: 2.217777e-03	ci right 2.693562e-03	k: 416	n:170000
Cons ci ratio: 3.335561e-01	ci left: 6.766331e-04	ci right 9.526148e-04	k: 137	n:170000
KS ci ratio: 5.638913e-02	ci left: 2.686118e-02	ci right 2.842557e-02	k: 4698	n:170000
GPRIN3   170000 perm   48 sec   (3507 perm/sec)   p_kst 2.763529e-02   p_cons 8.058824e-04   p_joint 2.447059e-03

Joint ci ratio: 1.926686e-01	ci left: 2.073399e-03	ci right 2.520650e-03	k: 412	n:180000
Cons ci ratio: 3.178188e-01	ci left: 7.104672e-04	ci right 9.838000e-04	k: 151	n:180000
KS ci ratio: 5.490496e-02	ci left: 2.678225e-02	ci right 2.829969e-02	k: 4956	n:180000
GPRIN3   180000 perm   52 sec   (3462 perm/sec)   p_kst 2.753333e-02   p_cons 8.388889e-04   p_joint 2.288889e-03

Joint ci ratio: 1.990612e-01	ci left: 1.834116e-03	ci right 2.244473e-03	k: 386	n:190000
Cons ci ratio: 3.117279e-01	ci left: 7.021583e-04	ci right 9.660873e-04	k: 157	n:190000
KS ci ratio: 5.347415e-02	ci left: 2.676925e-02	ci right 2.824521e-02	k: 5225	n:190000
GPRIN3   190000 perm   56 sec   (3417 perm/sec)   p_kst 2.750000e-02   p_cons 8.263158e-04   p_joint 2.031579e-03

Joint ci ratio: 2.146352e-01	ci left: 1.486346e-03	ci right 1.848343e-03	k: 332	n:200000
Cons ci ratio: 3.032113e-01	ci left: 7.085798e-04	ci right 9.662430e-04	k: 166	n:200000
KS ci ratio: 5.210581e-02	ci left: 2.680245e-02	ci right 2.824129e-02	k: 5503	n:200000
GPRIN3   200000 perm   59 sec   (3373 perm/sec)   p_kst 2.751500e-02   p_cons 8.300000e-04   p_joint 1.660000e-03

Joint ci ratio: 1.823717e-01	ci left: 1.995040e-03	ci right 2.399849e-03	k: 460	n:210000
Cons ci ratio: 2.953566e-01	ci left: 7.144782e-04	ci right 9.662961e-04	k: 175	n:210000
KS ci ratio: 5.176070e-02	ci left: 2.589714e-02	ci right 2.727788e-02	k: 5582	n:210000
GPRIN3   210000 perm   63 sec   (3328 perm/sec)   p_kst 2.658095e-02   p_cons 8.333333e-04   p_joint 2.190476e-03

Joint ci ratio: 1.785407e-01	ci left: 1.991159e-03	ci right 2.385777e-03	k: 480	n:220000
Cons ci ratio: 2.880823e-01	ci left: 7.199185e-04	ci right 9.662670e-04	k: 184	n:220000
KS ci ratio: 5.059668e-02	ci left: 2.588668e-02	ci right 2.723492e-02	k: 5842	n:220000
GPRIN3   220000 perm   67 sec   (3277 perm/sec)   p_kst 2.655455e-02   p_cons 8.363636e-04   p_joint 2.181818e-03

Joint ci ratio: 1.765377e-01	ci left: 1.950284e-03	ci right 2.332002e-03	k: 491	n:230000
Cons ci ratio: 2.813203e-01	ci left: 7.249549e-04	ci right 9.661717e-04	k: 193	n:230000
KS ci ratio: 4.947451e-02	ci left: 2.591182e-02	ci right 2.723058e-02	k: 6110	n:230000
GPRIN3   230000 perm   71 sec   (3236 perm/sec)   p_kst 2.656522e-02   p_cons 8.391304e-04   p_joint 2.134783e-03

Joint ci ratio: 1.725500e-01	ci left: 1.960670e-03	ci right 2.334850e-03	k: 514	n:240000
Cons ci ratio: 2.730015e-01	ci left: 7.412753e-04	ci right 9.793788e-04	k: 205	n:240000
KS ci ratio: 4.841215e-02	ci left: 2.594752e-02	ci right 2.723895e-02	k: 6381	n:240000
GPRIN3   240000 perm   75 sec   (3194 perm/sec)   p_kst 2.658750e-02   p_cons 8.541667e-04   p_joint 2.141667e-03

Joint ci ratio: 1.689784e-01	ci left: 1.966483e-03	ci right 2.333212e-03	k: 536	n:250000
Cons ci ratio: 2.684790e-01	ci left: 7.377237e-04	ci right 9.700999e-04	k: 212	n:250000
KS ci ratio: 4.743006e-02	ci left: 2.596482e-02	ci right 2.723018e-02	k: 6648	n:250000
GPRIN3   250000 perm   79 sec   (3154 perm/sec)   p_kst 2.659200e-02   p_cons 8.480000e-04   p_joint 2.144000e-03

Joint ci ratio: 1.660669e-01	ci left: 1.960862e-03	ci right 2.319612e-03	k: 555	n:260000
Cons ci ratio: 2.612197e-01	ci left: 7.524407e-04	ci right 9.819979e-04	k: 224	n:260000
KS ci ratio: 4.654691e-02	ci left: 2.593541e-02	ci right 2.717517e-02	k: 6903	n:260000
GPRIN3   260000 perm   83 sec   (3114 perm/sec)   p_kst 2.655000e-02   p_cons 8.615385e-04   p_joint 2.134615e-03

Joint ci ratio: 1.771076e-01	ci left: 1.650711e-03	ci right 1.974948e-03	k: 488	n:270000
Cons ci ratio: 2.561469e-01	ci left: 7.557449e-04	ci right 9.811172e-04	k: 233	n:270000
KS ci ratio: 4.559045e-02	ci left: 2.604390e-02	ci right 2.726259e-02	k: 7195	n:270000
GPRIN3   270000 perm   88 sec   (3075 perm/sec)   p_kst 2.664815e-02   p_cons 8.629630e-04   p_joint 1.807407e-03

Joint ci ratio: 1.751508e-01	ci left: 1.629309e-03	ci right 1.945432e-03	k: 499	n:280000
Cons ci ratio: 2.524003e-01	ci left: 7.521608e-04	ci right 9.726674e-04	k: 240	n:280000
KS ci ratio: 4.479212e-02	ci left: 2.602830e-02	ci right 2.722438e-02	k: 7454	n:280000
GPRIN3   280000 perm   92 sec   (3038 perm/sec)   p_kst 2.662143e-02   p_cons 8.571429e-04   p_joint 1.782143e-03

Joint ci ratio: 1.787743e-01	ci left: 1.507206e-03	ci right 1.806342e-03	k: 479	n:290000
Cons ci ratio: 2.371371e-01	ci left: 8.298116e-04	ci right 1.056215e-03	k: 272	n:290000
KS ci ratio: 4.400502e-02	ci left: 2.604807e-02	ci right 2.722349e-02	k: 7723	n:290000
GPRIN3   290000 perm   97 sec   (3002 perm/sec)   p_kst 2.663103e-02   p_cons 9.379310e-04   p_joint 1.651724e-03

Joint ci ratio: 1.756900e-01	ci left: 1.511119e-03	ci right 1.805308e-03	k: 496	n:300000
Cons ci ratio: 2.337377e-01	ci left: 8.272449e-04	ci right 1.049245e-03	k: 280	n:300000
KS ci ratio: 4.328305e-02	ci left: 2.603700e-02	ci right 2.719217e-02	k: 7983	n:300000
GPRIN3   300000 perm   101 sec   (2960 perm/sec)   p_kst 2.661000e-02   p_cons 9.333333e-04   p_joint 1.653333e-03

Joint ci ratio: 1.806787e-01	ci left: 1.379152e-03	ci right 1.656107e-03	k: 469	n:310000
Cons ci ratio: 2.296862e-01	ci left: 8.309454e-04	ci right 1.049525e-03	k: 290	n:310000
KS ci ratio: 4.256367e-02	ci left: 2.606511e-02	ci right 2.720183e-02	k: 8255	n:310000
GPRIN3   310000 perm   106 sec   (2926 perm/sec)   p_kst 2.662903e-02   p_cons 9.354839e-04   p_joint 1.512903e-03

Joint ci ratio: 1.778628e-01	ci left: 1.380825e-03	ci right 1.653330e-03	k: 484	n:320000
Cons ci ratio: 2.247203e-01	ci left: 8.432921e-04	ci right 1.059660e-03	k: 303	n:320000
KS ci ratio: 4.191436e-02	ci left: 2.604830e-02	ci right 2.716654e-02	k: 8513	n:320000
GPRIN3   320000 perm   111 sec   (2892 perm/sec)   p_kst 2.660312e-02   p_cons 9.468750e-04   p_joint 1.512500e-03

Joint ci ratio: 1.748248e-01	ci left: 1.388224e-03	ci right 1.657015e-03	k: 501	n:330000
Cons ci ratio: 2.190281e-01	ci left: 8.635296e-04	ci right 1.078722e-03	k: 319	n:330000
KS ci ratio: 4.127215e-02	ci left: 2.605964e-02	ci right 2.716082e-02	k: 8780	n:330000
GPRIN3   330000 perm   115 sec   (2860 perm/sec)   p_kst 2.660606e-02   p_cons 9.666667e-04   p_joint 1.518182e-03

Joint ci ratio: 1.795468e-01	ci left: 1.274307e-03	ci right 1.528430e-03	k: 475	n:340000
Cons ci ratio: 2.163410e-01	ci left: 8.603781e-04	ci right 1.071805e-03	k: 327	n:340000
KS ci ratio: 4.066089e-02	ci left: 2.606752e-02	ci right 2.715234e-02	k: 9046	n:340000
GPRIN3   340000 perm   120 sec   (2829 perm/sec)   p_kst 2.660588e-02   p_cons 9.617647e-04   p_joint 1.397059e-03

Joint ci ratio: 1.828497e-01	ci left: 1.191525e-03	ci right 1.433995e-03	k: 458	n:350000
Cons ci ratio: 2.128017e-01	ci left: 8.655359e-04	ci right 1.074297e-03	k: 338	n:350000
KS ci ratio: 4.005171e-02	ci left: 2.610618e-02	ci right 2.717596e-02	k: 9323	n:350000
GPRIN3   350000 perm   125 sec   (2799 perm/sec)   p_kst 2.663714e-02   p_cons 9.657143e-04   p_joint 1.308571e-03

Joint ci ratio: 1.797430e-01	ci left: 1.200855e-03	ci right 1.440620e-03	k: 474	n:360000
Cons ci ratio: 2.091318e-01	ci left: 8.730659e-04	ci right 1.079547e-03	k: 350	n:360000
KS ci ratio: 3.947123e-02	ci left: 2.614006e-02	ci right 2.719535e-02	k: 9599	n:360000
GPRIN3   360000 perm   130 sec   (2768 perm/sec)   p_kst 2.666389e-02   p_cons 9.722222e-04   p_joint 1.316667e-03

Joint ci ratio: 1.775150e-01	ci left: 1.199382e-03	ci right 1.435566e-03	k: 486	n:370000
Cons ci ratio: 2.062148e-01	ci left: 8.750912e-04	ci right 1.078800e-03	k: 360	n:370000
KS ci ratio: 3.893959e-02	ci left: 2.614009e-02	ci right 2.718085e-02	k: 9863	n:370000
GPRIN3   370000 perm   135 sec   (2736 perm/sec)   p_kst 2.665676e-02   p_cons 9.729730e-04   p_joint 1.313514e-03

Joint ci ratio: 1.753678e-01	ci left: 1.198004e-03	ci right 1.430760e-03	k: 498	n:380000
Cons ci ratio: 2.028700e-01	ci left: 8.820244e-04	ci right 1.083604e-03	k: 372	n:380000
KS ci ratio: 3.842108e-02	ci left: 2.615064e-02	ci right 2.717765e-02	k: 10131	n:380000
GPRIN3   380000 perm   140 sec   (2706 perm/sec)   p_kst 2.666053e-02   p_cons 9.789474e-04   p_joint 1.310526e-03

Joint ci ratio: 1.721203e-01	ci left: 1.213886e-03	ci right 1.444907e-03	k: 517	n:390000
Cons ci ratio: 1.996828e-01	ci left: 8.886273e-04	ci right 1.088137e-03	k: 384	n:390000
KS ci ratio: 3.791150e-02	ci left: 2.617598e-02	ci right 2.719005e-02	k: 10405	n:390000
GPRIN3   390000 perm   146 sec   (2675 perm/sec)   p_kst 2.667949e-02   p_cons 9.846154e-04   p_joint 1.325641e-03

Joint ci ratio: 1.708075e-01	ci left: 1.202680e-03	ci right 1.429643e-03	k: 525	n:400000
Cons ci ratio: 1.971389e-01	ci left: 8.901698e-04	ci right 1.087174e-03	k: 394	n:400000
KS ci ratio: 3.747399e-02	ci left: 2.612829e-02	ci right 2.712858e-02	k: 10650	n:400000
GPRIN3   400000 perm   151 sec   (2648 perm/sec)   p_kst 2.662500e-02   p_cons 9.850000e-04   p_joint 1.312500e-03

Joint ci ratio: 2.204320e-01	ci left: 6.858097e-04	ci right 8.579575e-04	k: 315	n:410000
Cons ci ratio: 2.218416e-01	ci left: 6.765936e-04	ci right 8.476624e-04	k: 311	n:410000
KS ci ratio: 3.706176e-02	ci left: 2.606850e-02	ci right 2.705528e-02	k: 10889	n:410000
GPRIN3   410000 perm   157 sec   (2617 perm/sec)   p_kst 2.655854e-02   p_cons 7.585366e-04   p_joint 7.682927e-04

Joint ci ratio: 2.173581e-01	ci left: 6.897348e-04	ci right 8.601313e-04	k: 324	n:420000
Cons ci ratio: 2.204340e-01	ci left: 6.694802e-04	ci right 8.375308e-04	k: 315	n:420000
KS ci ratio: 3.657011e-02	ci left: 2.614139e-02	ci right 2.711753e-02	k: 11183	n:420000
GPRIN3   420000 perm   162 sec   (2590 perm/sec)   p_kst 2.662619e-02   p_cons 7.500000e-04   p_joint 7.714286e-04

Joint ci ratio: 1.889444e-01	ci left: 9.055288e-04	ci right 1.096647e-03	k: 429	n:430000
Cons ci ratio: 2.170262e-01	ci left: 6.758930e-04	ci right 8.425809e-04	k: 325	n:430000
KS ci ratio: 3.612826e-02	ci left: 2.616718e-02	ci right 2.713223e-02	k: 11458	n:430000
GPRIN3   430000 perm   168 sec   (2559 perm/sec)   p_kst 2.664651e-02   p_cons 7.558140e-04   p_joint 9.976744e-04

Joint ci ratio: 1.872114e-01	ci left: 9.022743e-04	ci right 1.090760e-03	k: 437	n:440000
Cons ci ratio: 2.153814e-01	ci left: 6.712800e-04	ci right 8.354096e-04	k: 330	n:440000
KS ci ratio: 3.575530e-02	ci left: 2.611526e-02	ci right 2.706826e-02	k: 11699	n:440000
GPRIN3   440000 perm   174 sec   (2530 perm/sec)   p_kst 2.658864e-02   p_cons 7.500000e-04   p_joint 9.931818e-04

Joint ci ratio: 1.844929e-01	ci left: 9.097689e-04	ci right 1.096752e-03	k: 450	n:450000
Cons ci ratio: 2.125113e-01	ci left: 6.752912e-04	ci right 8.379147e-04	k: 339	n:450000
KS ci ratio: 3.532079e-02	ci left: 2.617145e-02	ci right 2.711465e-02	k: 11988	n:450000
GPRIN3   450000 perm   180 sec   (2504 perm/sec)   p_kst 2.664000e-02   p_cons 7.533333e-04   p_joint 1.000000e-03

Joint ci ratio: 1.855272e-01	ci left: 8.796239e-04	ci right 1.061539e-03	k: 445	n:460000
Cons ci ratio: 2.100543e-01	ci left: 6.770822e-04	ci right 8.380093e-04	k: 347	n:460000
KS ci ratio: 3.494123e-02	ci left: 2.616707e-02	ci right 2.709978e-02	k: 12250	n:460000
GPRIN3   460000 perm   186 sec   (2479 perm/sec)   p_kst 2.663043e-02   p_cons 7.543478e-04   p_joint 9.673913e-04

Joint ci ratio: 1.834816e-01	ci left: 8.812025e-04	ci right 1.061211e-03	k: 455	n:470000
Cons ci ratio: 2.070993e-01	ci left: 6.828417e-04	ci right 8.425653e-04	k: 357	n:470000
KS ci ratio: 3.457224e-02	ci left: 2.616503e-02	ci right 2.708762e-02	k: 12513	n:470000
GPRIN3   470000 perm   192 sec   (2454 perm/sec)   p_kst 2.662340e-02   p_cons 7.595745e-04   p_joint 9.680851e-04

Joint ci ratio: 1.930414e-01	ci left: 7.754906e-04	ci right 9.431287e-04	k: 411	n:480000
Cons ci ratio: 2.051039e-01	ci left: 6.824465e-04	ci right 8.403468e-04	k: 364	n:480000
KS ci ratio: 3.421882e-02	ci left: 2.615693e-02	ci right 2.706962e-02	k: 12773	n:480000
GPRIN3   480000 perm   198 sec   (2429 perm/sec)   p_kst 2.661042e-02   p_cons 7.583333e-04   p_joint 8.562500e-04

Joint ci ratio: 1.932780e-01	ci left: 7.577215e-04	ci right 9.217427e-04	k: 410	n:490000
Cons ci ratio: 2.034390e-01	ci left: 6.801376e-04	ci right 8.360674e-04	k: 370	n:490000
KS ci ratio: 3.388671e-02	ci left: 2.613302e-02	ci right 2.703585e-02	k: 13025	n:490000
GPRIN3   490000 perm   204 sec   (2406 perm/sec)   p_kst 2.658163e-02   p_cons 7.551020e-04   p_joint 8.367347e-04

Joint ci ratio: 1.923452e-01	ci left: 7.501806e-04	ci right 9.116939e-04	k: 414	n:500000
Cons ci ratio: 2.012803e-01	ci left: 6.817242e-04	ci right 8.361556e-04	k: 378	n:500000
KS ci ratio: 3.358618e-02	ci left: 2.607638e-02	ci right 2.696912e-02	k: 13260	n:500000
GPRIN3   500000 perm   210 sec   (2383 perm/sec)   p_kst 2.652000e-02   p_cons 7.560000e-04   p_joint 8.280000e-04

Joint ci ratio: 1.896225e-01	ci left: 7.578759e-04	ci right 9.184703e-04	k: 426	n:510000
Cons ci ratio: 1.989319e-01	ci left: 6.851200e-04	ci right 8.382903e-04	k: 387	n:510000
KS ci ratio: 3.328970e-02	ci left: 2.602783e-02	ci right 2.691089e-02	k: 13498	n:510000
GPRIN3   510000 perm   216 sec   (2361 perm/sec)   p_kst 2.646667e-02   p_cons 7.588235e-04   p_joint 8.352941e-04

Joint ci ratio: 1.870122e-01	ci left: 7.652907e-04	ci right 9.249706e-04	k: 438	n:520000
Cons ci ratio: 1.964164e-01	ci left: 6.902239e-04	ci right 8.423505e-04	k: 397	n:520000
KS ci ratio: 3.294554e-02	ci left: 2.606703e-02	ci right 2.694210e-02	k: 13781	n:520000
GPRIN3   520000 perm   222 sec   (2339 perm/sec)   p_kst 2.650192e-02   p_cons 7.634615e-04   p_joint 8.423077e-04

Joint ci ratio: 1.849177e-01	ci left: 7.688409e-04	ci right 9.272634e-04	k: 448	n:530000
Cons ci ratio: 1.949528e-01	ci left: 6.879668e-04	ci right 8.383319e-04	k: 403	n:530000
KS ci ratio: 3.263330e-02	ci left: 2.607110e-02	ci right 2.693786e-02	k: 14046	n:530000
GPRIN3   530000 perm   229 sec   (2319 perm/sec)   p_kst 2.650189e-02   p_cons 7.603774e-04   p_joint 8.452830e-04

Joint ci ratio: 1.874430e-01	ci left: 7.334153e-04	ci right 8.868368e-04	k: 436	n:540000
Cons ci ratio: 1.932856e-01	ci left: 6.875596e-04	ci right 8.363994e-04	k: 410	n:540000
KS ci ratio: 3.229965e-02	ci left: 2.612283e-02	ci right 2.698226e-02	k: 14337	n:540000
GPRIN3   540000 perm   235 sec   (2295 perm/sec)   p_kst 2.655000e-02   p_cons 7.592593e-04   p_joint 8.074074e-04

Joint ci ratio: 1.870165e-01	ci left: 7.235461e-04	ci right 8.745196e-04	k: 438	n:550000
Cons ci ratio: 1.912032e-01	ci left: 6.906347e-04	ci right 8.383423e-04	k: 419	n:550000
KS ci ratio: 3.198501e-02	ci left: 2.615829e-02	ci right 2.701035e-02	k: 14620	n:550000
GPRIN3   550000 perm   242 sec   (2274 perm/sec)   p_kst 2.658182e-02   p_cons 7.618182e-04   p_joint 7.963636e-04

Joint ci ratio: 1.853355e-01	ci left: 7.242455e-04	ci right 8.738539e-04	k: 446	n:560000
Cons ci ratio: 1.900756e-01	ci left: 6.868043e-04	ci right 8.327263e-04	k: 424	n:560000
KS ci ratio: 3.171219e-02	ci left: 2.613936e-02	ci right 2.698341e-02	k: 14873	n:560000
GPRIN3   560000 perm   249 sec   (2253 perm/sec)   p_kst 2.655893e-02   p_cons 7.571429e-04   p_joint 7.964286e-04

Joint ci ratio: 1.828961e-01	ci left: 7.316221e-04	ci right 8.805447e-04	k: 458	n:570000
Cons ci ratio: 1.885294e-01	ci left: 6.864538e-04	ci right 8.309791e-04	k: 431	n:570000
KS ci ratio: 3.142490e-02	ci left: 2.615594e-02	ci right 2.699274e-02	k: 15146	n:570000
GPRIN3   570000 perm   255 sec   (2233 perm/sec)   p_kst 2.657193e-02   p_cons 7.561404e-04   p_joint 8.035088e-04

Joint ci ratio: 1.815174e-01	ci left: 7.305264e-04	ci right 8.779818e-04	k: 465	n:580000
Cons ci ratio: 1.865955e-01	ci left: 6.894071e-04	ci right 8.328967e-04	k: 440	n:580000
KS ci ratio: 3.113180e-02	ci left: 2.619423e-02	ci right 2.702430e-02	k: 15432	n:580000
GPRIN3   580000 perm   262 sec   (2214 perm/sec)   p_kst 2.660690e-02   p_cons 7.586207e-04   p_joint 8.017241e-04

Joint ci ratio: 1.823033e-01	ci left: 7.116730e-04	ci right 8.560135e-04	k: 461	n:590000
Cons ci ratio: 1.853392e-01	ci left: 6.874183e-04	ci right 8.294223e-04	k: 446	n:590000
KS ci ratio: 3.088108e-02	ci left: 2.617407e-02	ci right 2.699669e-02	k: 15684	n:590000
GPRIN3   590000 perm   269 sec   (2195 perm/sec)   p_kst 2.658305e-02   p_cons 7.559322e-04   p_joint 7.813559e-04

Joint ci ratio: 1.797906e-01	ci left: 7.204969e-04	ci right 8.643937e-04	k: 474	n:600000
Cons ci ratio: 1.839049e-01	ci left: 6.870888e-04	ci right 8.278039e-04	k: 453	n:600000
KS ci ratio: 3.060773e-02	ci left: 2.620257e-02	ci right 2.701868e-02	k: 15965	n:600000
GPRIN3   600000 perm   276 sec   (2177 perm/sec)   p_kst 2.660833e-02   p_cons 7.550000e-04   p_joint 7.900000e-04

Joint ci ratio: 1.786660e-01	ci left: 7.180802e-04	ci right 8.605003e-04	k: 480	n:610000
Cons ci ratio: 1.815210e-01	ci left: 6.945977e-04	ci right 8.348039e-04	k: 465	n:610000
KS ci ratio: 3.034534e-02	ci left: 2.622366e-02	ci right 2.703330e-02	k: 16242	n:610000
GPRIN3   610000 perm   282 sec   (2159 perm/sec)   p_kst 2.662623e-02   p_cons 7.622951e-04   p_joint 7.868852e-04

Joint ci ratio: 1.768369e-01	ci left: 7.219098e-04	ci right 8.634670e-04	k: 490	n:620000
Cons ci ratio: 1.805553e-01	ci left: 6.910935e-04	ci right 8.297691e-04	k: 470	n:620000
KS ci ratio: 3.008118e-02	ci left: 2.625851e-02	ci right 2.706205e-02	k: 16528	n:620000
GPRIN3   620000 perm   290 sec   (2141 perm/sec)   p_kst 2.665806e-02   p_cons 7.580645e-04   p_joint 7.903226e-04

Joint ci ratio: 1.747142e-01	ci left: 7.286608e-04	ci right 8.696457e-04	k: 502	n:630000
Cons ci ratio: 1.796049e-01	ci left: 6.877024e-04	ci right 8.248922e-04	k: 475	n:630000
KS ci ratio: 2.985938e-02	ci left: 2.623083e-02	ci right 2.702750e-02	k: 16775	n:630000
GPRIN3   630000 perm   297 sec   (2123 perm/sec)   p_kst 2.662698e-02   p_cons 7.539683e-04   p_joint 7.968254e-04

Joint ci ratio: 1.735112e-01	ci left: 7.277363e-04	ci right 8.674712e-04	k: 509	n:640000
Cons ci ratio: 1.779304e-01	ci left: 6.903904e-04	ci right 8.266942e-04	k: 484	n:640000
KS ci ratio: 2.962991e-02	ci left: 2.622575e-02	ci right 2.701604e-02	k: 17036	n:640000
GPRIN3   640000 perm   304 sec   (2106 perm/sec)   p_kst 2.661875e-02   p_cons 7.562500e-04   p_joint 7.953125e-04

Joint ci ratio: 1.720001e-01	ci left: 7.297879e-04	ci right 8.685697e-04	k: 518	n:650000
Cons ci ratio: 1.755920e-01	ci left: 6.988844e-04	ci right 8.348594e-04	k: 497	n:650000
KS ci ratio: 2.938297e-02	ci left: 2.626057e-02	ci right 2.704520e-02	k: 17323	n:650000
GPRIN3   650000 perm   312 sec   (2086 perm/sec)   p_kst 2.665077e-02   p_cons 7.646154e-04   p_joint 7.969231e-04

Joint ci ratio: 1.728363e-01	ci left: 7.114811e-04	ci right 8.475079e-04	k: 513	n:660000
Cons ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
KS ci ratio: 2.917019e-02	ci left: 2.624471e-02	ci right 2.702309e-02	k: 17577	n:660000
GPRIN3   660000 perm   319 sec   (2069 perm/sec)   p_kst 2.663182e-02   p_cons 7.590909e-04   p_joint 7.772727e-04

Joint ci ratio: 1.728373e-01	ci left: 7.008616e-04	ci right 8.348590e-04	k: 513	n:670000
Cons ci ratio: 1.740273e-01	ci left: 6.908670e-04	ci right 8.239586e-04	k: 506	n:670000
KS ci ratio: 2.898368e-02	ci left: 2.619081e-02	ci right 2.696255e-02	k: 17805	n:670000
GPRIN3   670000 perm   326 sec   (2053 perm/sec)   p_kst 2.657463e-02   p_cons 7.552239e-04   p_joint 7.656716e-04

Joint ci ratio: 1.725028e-01	ci left: 6.933686e-04	ci right 8.256501e-04	k: 515	n:680000
Cons ci ratio: 1.738568e-01	ci left: 6.821135e-04	ci right 8.133764e-04	k: 507	n:680000
KS ci ratio: 2.879005e-02	ci left: 2.615750e-02	ci right 2.692302e-02	k: 18046	n:680000
GPRIN3   680000 perm   334 sec   (2034 perm/sec)   p_kst 2.653824e-02   p_cons 7.455882e-04   p_joint 7.573529e-04

Joint ci ratio: 1.718385e-01	ci left: 6.888670e-04	ci right 8.197310e-04	k: 519	n:690000
Cons ci ratio: 1.725037e-01	ci left: 6.833195e-04	ci right 8.136846e-04	k: 515	n:690000
KS ci ratio: 2.861069e-02	ci left: 2.610645e-02	ci right 2.686564e-02	k: 18274	n:690000
GPRIN3   690000 perm   342 sec   (2018 perm/sec)   p_kst 2.648406e-02   p_cons 7.463768e-04   p_joint 7.521739e-04

Joint ci ratio: 1.706935e-01	ci left: 6.885974e-04	ci right 8.184489e-04	k: 526	n:700000
Cons ci ratio: 1.708558e-01	ci left: 6.872298e-04	ci right 8.169593e-04	k: 525	n:700000
KS ci ratio: 2.841335e-02	ci left: 2.609519e-02	ci right 2.684873e-02	k: 18529	n:700000
GPRIN3   700000 perm   350 sec   (2000 perm/sec)   p_kst 2.647000e-02   p_cons 7.500000e-04   p_joint 7.514286e-04

Joint ci ratio: 1.702102e-01	ci left: 6.829437e-04	ci right 8.113271e-04	k: 529	n:710000
Cons ci ratio: 1.698897e-01	ci left: 6.856408e-04	ci right 8.142636e-04	k: 531	n:710000
KS ci ratio: 2.820770e-02	ci left: 2.610664e-02	ci right 2.685497e-02	k: 18800	n:710000
GPRIN3   710000 perm   358 sec   (1984 perm/sec)   p_kst 2.647887e-02   p_cons 7.478873e-04   p_joint 7.450704e-04

Joint ci ratio: 1.689399e-01	ci left: 6.840980e-04	ci right 8.116408e-04	k: 537	n:720000
Cons ci ratio: 1.692551e-01	ci left: 6.814377e-04	ci right 8.087457e-04	k: 535	n:720000
KS ci ratio: 2.799515e-02	ci left: 2.613849e-02	ci right 2.688199e-02	k: 19086	n:720000
GPRIN3   720000 perm   366 sec   (1969 perm/sec)   p_kst 2.650833e-02   p_cons 7.430556e-04   p_joint 7.458333e-04

Joint ci ratio: 1.683158e-01	ci left: 6.799749e-04	ci right 8.062331e-04	k: 541	n:730000
Cons ci ratio: 1.683158e-01	ci left: 6.799749e-04	ci right 8.062331e-04	k: 541	n:730000
KS ci ratio: 2.781315e-02	ci left: 2.612186e-02	ci right 2.685999e-02	k: 19337	n:730000
GPRIN3   730000 perm   374 sec   (1954 perm/sec)   p_kst 2.648904e-02   p_cons 7.410959e-04   p_joint 7.410959e-04

Joint ci ratio: 1.678524e-01	ci left: 6.746694e-04	ci right 7.995627e-04	k: 544	n:740000
Cons ci ratio: 1.672393e-01	ci left: 6.798483e-04	ci right 8.051944e-04	k: 548	n:740000
KS ci ratio: 2.761583e-02	ci left: 2.614060e-02	ci right 2.687393e-02	k: 19614	n:740000
GPRIN3   740000 perm   382 sec   (1940 perm/sec)   p_kst 2.650541e-02   p_cons 7.405405e-04   p_joint 7.351351e-04

Joint ci ratio: 1.593063e-01	ci left: 7.424031e-04	ci right 8.721692e-04	k: 604	n:750000
Cons ci ratio: 1.658850e-01	ci left: 6.822835e-04	ci right 8.069581e-04	k: 557	n:750000
KS ci ratio: 2.741982e-02	ci left: 2.616415e-02	ci right 2.689285e-02	k: 19895	n:750000
GPRIN3   750000 perm   390 sec   (1925 perm/sec)   p_kst 2.652667e-02   p_cons 7.426667e-04   p_joint 8.053333e-04

Joint ci ratio: 1.586523e-01	ci left: 7.389517e-04	ci right 8.675339e-04	k: 609	n:760000
Cons ci ratio: 1.651470e-01	ci left: 6.796124e-04	ci right 8.031916e-04	k: 562	n:760000
KS ci ratio: 2.723486e-02	ci left: 2.617403e-02	ci right 2.689801e-02	k: 20166	n:760000
GPRIN3   760000 perm   398 sec   (1911 perm/sec)   p_kst 2.653421e-02   p_cons 7.394737e-04   p_joint 8.013158e-04

Joint ci ratio: 1.572406e-01	ci left: 7.430762e-04	ci right 8.711170e-04	k: 620	n:770000
Cons ci ratio: 1.634141e-01	ci left: 6.857302e-04	ci right 8.089849e-04	k: 574	n:770000
KS ci ratio: 2.706789e-02	ci left: 2.615657e-02	ci right 2.687557e-02	k: 20416	n:770000
GPRIN3   770000 perm   406 sec   (1896 perm/sec)   p_kst 2.651429e-02   p_cons 7.454545e-04   p_joint 8.051948e-04

Joint ci ratio: 1.558659e-01	ci left: 7.470998e-04	ci right 8.746033e-04	k: 631	n:780000
Cons ci ratio: 1.618728e-01	ci left: 6.904675e-04	ci right 8.132892e-04	k: 585	n:780000
KS ci ratio: 2.688991e-02	ci left: 2.616633e-02	ci right 2.688079e-02	k: 20687	n:780000
GPRIN3   780000 perm   414 sec   (1882 perm/sec)   p_kst 2.652179e-02   p_cons 7.500000e-04   p_joint 8.089744e-04

Joint ci ratio: 1.553754e-01	ci left: 7.425088e-04	ci right 8.687928e-04	k: 635	n:790000
Cons ci ratio: 1.613235e-01	ci left: 6.865858e-04	ci right 8.082624e-04	k: 589	n:790000
KS ci ratio: 2.672720e-02	ci left: 2.615321e-02	ci right 2.686293e-02	k: 20940	n:790000
GPRIN3   790000 perm   423 sec   (1867 perm/sec)   p_kst 2.650633e-02   p_cons 7.455696e-04   p_joint 8.037975e-04

Joint ci ratio: 1.540487e-01	ci left: 7.464452e-04	ci right 8.722147e-04	k: 646	n:800000
Cons ci ratio: 1.607797e-01	ci left: 6.828019e-04	ci right 8.033606e-04	k: 593	n:800000
KS ci ratio: 2.655646e-02	ci left: 2.616155e-02	ci right 2.686689e-02	k: 21210	n:800000
GPRIN3   800000 perm   432 sec   (1853 perm/sec)   p_kst 2.651250e-02   p_cons 7.412500e-04   p_joint 8.075000e-04

Joint ci ratio: 1.533395e-01	ci left: 7.443523e-04	ci right 8.691387e-04	k: 652	n:810000
Cons ci ratio: 1.591794e-01	ci left: 6.885941e-04	ci right 8.088498e-04	k: 605	n:810000
KS ci ratio: 2.639716e-02	ci left: 2.615375e-02	ci right 2.685458e-02	k: 21467	n:810000
GPRIN3   810000 perm   440 sec   (1840 perm/sec)   p_kst 2.650247e-02   p_cons 7.469136e-04   p_joint 8.049383e-04

Joint ci ratio: 1.534579e-01	ci left: 7.341019e-04	ci right 8.572736e-04	k: 651	n:820000
Cons ci ratio: 1.573714e-01	ci left: 6.965938e-04	ci right 8.167343e-04	k: 619	n:820000
KS ci ratio: 2.623449e-02	ci left: 2.615827e-02	ci right 2.685484e-02	k: 21734	n:820000
GPRIN3   820000 perm   448 sec   (1831 perm/sec)   p_kst 2.650488e-02   p_cons 7.548780e-04   p_joint 7.939024e-04

Joint ci ratio: 1.524095e-01	ci left: 7.356857e-04	ci right 8.582029e-04	k: 660	n:830000
Cons ci ratio: 1.564905e-01	ci left: 6.963036e-04	ci right 8.156588e-04	k: 626	n:830000
KS ci ratio: 2.608332e-02	ci left: 2.614593e-02	ci right 2.683810e-02	k: 21987	n:830000
GPRIN3   830000 perm   455 sec   (1822 perm/sec)   p_kst 2.649036e-02   p_cons 7.542169e-04   p_joint 7.951807e-04

Joint ci ratio: 1.512694e-01	ci left: 7.383801e-04	ci right 8.603428e-04	k: 670	n:840000
Cons ci ratio: 1.557472e-01	ci left: 6.948781e-04	ci right 8.133703e-04	k: 632	n:840000
KS ci ratio: 2.592754e-02	ci left: 2.614810e-02	ci right 2.683613e-02	k: 22252	n:840000
GPRIN3   840000 perm   463 sec   (1814 perm/sec)   p_kst 2.649048e-02   p_cons 7.523810e-04   p_joint 7.976190e-04

Joint ci ratio: 1.498245e-01	ci left: 7.444115e-04	ci right 8.660908e-04	k: 683	n:850000
Cons ci ratio: 1.550144e-01	ci left: 6.934874e-04	ci right 8.111344e-04	k: 638	n:850000
KS ci ratio: 2.576278e-02	ci left: 2.617360e-02	ci right 2.685786e-02	k: 22537	n:850000
GPRIN3   850000 perm   471 sec   (1805 perm/sec)   p_kst 2.651412e-02   p_cons 7.505882e-04   p_joint 8.035294e-04

Joint ci ratio: 1.487410e-01	ci left: 7.469492e-04	ci right 8.680818e-04	k: 693	n:860000
Cons ci ratio: 1.544117e-01	ci left: 6.910124e-04	ci right 8.077415e-04	k: 643	n:860000
KS ci ratio: 2.560861e-02	ci left: 2.618351e-02	ci right 2.686387e-02	k: 22809	n:860000
GPRIN3   860000 perm   479 sec   (1796 perm/sec)   p_kst 2.652209e-02   p_cons 7.476744e-04   p_joint 8.058140e-04

Joint ci ratio: 1.478911e-01	ci left: 7.472177e-04	ci right 8.676402e-04	k: 701	n:870000
Cons ci ratio: 1.531093e-01	ci left: 6.952270e-04	ci right 8.115868e-04	k: 654	n:870000
KS ci ratio: 2.546454e-02	ci left: 2.617835e-02	ci right 2.685469e-02	k: 23068	n:870000
GPRIN3   870000 perm   487 sec   (1788 perm/sec)   p_kst 2.651494e-02   p_cons 7.517241e-04   p_joint 8.057471e-04

Joint ci ratio: 1.465400e-01	ci left: 7.529554e-04	ci right 8.730970e-04	k: 714	n:880000
Cons ci ratio: 1.522977e-01	ci left: 6.949773e-04	ci right 8.106225e-04	k: 661	n:880000
KS ci ratio: 2.531730e-02	ci left: 2.618461e-02	ci right 2.685715e-02	k: 23337	n:880000
GPRIN3   880000 perm   495 sec   (1779 perm/sec)   p_kst 2.651932e-02   p_cons 7.511364e-04   p_joint 8.113636e-04

Joint ci ratio: 1.454254e-01	ci left: 7.564034e-04	ci right 8.760974e-04	k: 725	n:890000
Cons ci ratio: 1.508236e-01	ci left: 7.012216e-04	ci right 8.166744e-04	k: 674	n:890000
KS ci ratio: 2.518465e-02	ci left: 2.616617e-02	ci right 2.683467e-02	k: 23584	n:890000
GPRIN3   890000 perm   503 sec   (1771 perm/sec)   p_kst 2.649888e-02   p_cons 7.573034e-04   p_joint 8.146067e-04

Joint ci ratio: 1.468500e-01	ci left: 7.330115e-04	ci right 8.502399e-04	k: 711	n:900000
Cons ci ratio: 1.495002e-01	ci left: 7.062627e-04	ci right 8.214340e-04	k: 686	n:900000
KS ci ratio: 2.506216e-02	ci left: 2.613159e-02	ci right 2.679591e-02	k: 23816	n:900000
GPRIN3   900000 perm   511 sec   (1762 perm/sec)   p_kst 2.646222e-02   p_cons 7.622222e-04   p_joint 7.900000e-04

Joint ci ratio: 1.463373e-01	ci left: 7.302493e-04	ci right 8.465926e-04	k: 716	n:910000
Cons ci ratio: 1.488517e-01	ci left: 7.048489e-04	ci right 8.192466e-04	k: 692	n:910000
KS ci ratio: 2.492707e-02	ci left: 2.612727e-02	ci right 2.678784e-02	k: 24075	n:910000
GPRIN3   910000 perm   519 sec   (1754 perm/sec)   p_kst 2.645604e-02   p_cons 7.604396e-04   p_joint 7.868132e-04

Joint ci ratio: 1.456282e-01	ci left: 7.296426e-04	ci right 8.452769e-04	k: 723	n:920000
Cons ci ratio: 1.481056e-01	ci left: 7.045135e-04	ci right 8.182330e-04	k: 699	n:920000
KS ci ratio: 2.478368e-02	ci left: 2.614465e-02	ci right 2.680181e-02	k: 24354	n:920000
GPRIN3   920000 perm   527 sec   (1745 perm/sec)   p_kst 2.647174e-02   p_cons 7.597826e-04   p_joint 7.858696e-04

Joint ci ratio: 1.460331e-01	ci left: 7.176525e-04	ci right 8.317305e-04	k: 719	n:930000
Cons ci ratio: 1.474751e-01	ci left: 7.031511e-04	ci right 8.161248e-04	k: 705	n:930000
KS ci ratio: 2.464788e-02	ci left: 2.615099e-02	ci right 2.680465e-02	k: 24623	n:930000
GPRIN3   930000 perm   536 sec   (1737 perm/sec)   p_kst 2.647634e-02   p_cons 7.580645e-04   p_joint 7.731183e-04

Joint ci ratio: 1.453284e-01	ci left: 7.171932e-04	ci right 8.306003e-04	k: 726	n:940000
Cons ci ratio: 1.464414e-01	ci left: 7.059180e-04	ci right 8.184717e-04	k: 715	n:940000
KS ci ratio: 2.451277e-02	ci left: 2.616037e-02	ci right 2.681064e-02	k: 24895	n:940000
GPRIN3   940000 perm   544 sec   (1728 perm/sec)   p_kst 2.648404e-02   p_cons 7.606383e-04   p_joint 7.723404e-04

Joint ci ratio: 1.443390e-01	ci left: 7.197888e-04	ci right 8.327646e-04	k: 736	n:950000
Cons ci ratio: 1.454292e-01	ci left: 7.086293e-04	ci right 8.207666e-04	k: 725	n:950000
KS ci ratio: 2.438284e-02	ci left: 2.616329e-02	ci right 2.681013e-02	k: 25161	n:950000
GPRIN3   950000 perm   552 sec   (1720 perm/sec)   p_kst 2.648526e-02   p_cons 7.631579e-04   p_joint 7.747368e-04

Joint ci ratio: 1.482140e-01	ci left: 6.741549e-04	ci right 7.830606e-04	k: 698	n:960000
Cons ci ratio: 1.451300e-01	ci left: 7.042590e-04	ci right 8.154556e-04	k: 728	n:960000
KS ci ratio: 2.424419e-02	ci left: 2.618893e-02	ci right 2.683268e-02	k: 25449	n:960000
GPRIN3   960000 perm   561 sec   (1711 perm/sec)   p_kst 2.650938e-02   p_cons 7.583333e-04   p_joint 7.270833e-04

Joint ci ratio: 1.468542e-01	ci left: 6.801124e-04	ci right 7.888841e-04	k: 711	n:970000
Cons ci ratio: 1.444382e-01	ci left: 7.039537e-04	ci right 8.145266e-04	k: 735	n:970000
KS ci ratio: 2.410162e-02	ci left: 2.622738e-02	ci right 2.686823e-02	k: 25750	n:970000
GPRIN3   970000 perm   570 sec   (1703 perm/sec)   p_kst 2.654639e-02   p_cons 7.577320e-04   p_joint 7.329897e-04

Joint ci ratio: 1.461376e-01	ci left: 6.800535e-04	ci right 7.882388e-04	k: 718	n:980000
Cons ci ratio: 1.440476e-01	ci left: 7.007047e-04	ci right 8.104440e-04	k: 739	n:980000
KS ci ratio: 2.396910e-02	ci left: 2.624883e-02	ci right 2.688663e-02	k: 26035	n:980000
GPRIN3   980000 perm   578 sec   (1695 perm/sec)   p_kst 2.656633e-02   p_cons 7.540816e-04   p_joint 7.326531e-04

Joint ci ratio: 1.473740e-01	ci left: 6.615076e-04	ci right 7.677114e-04	k: 706	n:990000
Cons ci ratio: 1.433711e-01	ci left: 7.004434e-04	ci right 8.095825e-04	k: 746	n:990000
KS ci ratio: 2.384572e-02	ci left: 2.625479e-02	ci right 2.688940e-02	k: 26305	n:990000
GPRIN3   990000 perm   587 sec   (1687 perm/sec)   p_kst 2.657071e-02   p_cons 7.535354e-04   p_joint 7.131313e-04

Joint ci ratio: 1.487494e-01	ci left: 6.423737e-04	ci right 7.465536e-04	k: 693	n:1000000
Cons ci ratio: 1.424208e-01	ci left: 7.030815e-04	ci right 8.118439e-04	k: 756	n:1000000
KS ci ratio: 2.372285e-02	ci left: 2.626362e-02	ci right 2.689513e-02	k: 26578	n:1000000
GPRIN3   1000000 perm   596 sec   (1678 perm/sec)   p_kst 2.657800e-02   p_cons 7.560000e-04   p_joint 6.930000e-04

Joint ci ratio: 1.480049e-01	ci left: 6.426869e-04	ci right 7.463498e-04	k: 700	n:1010000
Cons ci ratio: 1.418598e-01	ci left: 7.018496e-04	ci right 8.099576e-04	k: 762	n:1010000
KS ci ratio: 2.360006e-02	ci left: 2.627622e-02	ci right 2.690472e-02	k: 26855	n:1010000
GPRIN3   1010000 perm   605 sec   (1670 perm/sec)   p_kst 2.658911e-02   p_cons 7.544554e-04   p_joint 6.930693e-04

Joint ci ratio: 1.477946e-01	ci left: 6.382742e-04	ci right 7.410660e-04	k: 702	n:1020000
Cons ci ratio: 1.413975e-01	ci left: 6.996969e-04	ci right 8.070924e-04	k: 767	n:1020000
KS ci ratio: 2.347960e-02	ci left: 2.628761e-02	ci right 2.691312e-02	k: 27131	n:1020000
GPRIN3   1020000 perm   614 sec   (1662 perm/sec)   p_kst 2.659902e-02   p_cons 7.519608e-04   p_joint 6.882353e-04

Joint ci ratio: 1.467543e-01	ci left: 6.414284e-04	ci right 7.439374e-04	k: 712	n:1030000
Cons ci ratio: 1.404857e-01	ci left: 7.022702e-04	ci right 8.093074e-04	k: 777	n:1030000
KS ci ratio: 2.337235e-02	ci left: 2.627368e-02	ci right 2.689597e-02	k: 27381	n:1030000
GPRIN3   1030000 perm   624 sec   (1651 perm/sec)   p_kst 2.658350e-02   p_cons 7.543689e-04   p_joint 6.912621e-04

Joint ci ratio: 1.460391e-01	ci left: 6.417451e-04	ci right 7.437613e-04	k: 719	n:1040000
Cons ci ratio: 1.394143e-01	ci left: 7.066522e-04	ci right 8.134676e-04	k: 789	n:1040000
KS ci ratio: 2.325576e-02	ci left: 2.628393e-02	ci right 2.690332e-02	k: 27656	n:1040000
GPRIN3   1040000 perm   634 sec   (1640 perm/sec)   p_kst 2.659231e-02   p_cons 7.586538e-04   p_joint 6.913462e-04

Joint ci ratio: 1.463450e-01	ci left: 6.328804e-04	ci right 7.337165e-04	k: 716	n:1050000
Cons ci ratio: 1.389754e-01	ci left: 7.045182e-04	ci right 8.106480e-04	k: 794	n:1050000
KS ci ratio: 2.315282e-02	ci left: 2.626748e-02	ci right 2.688371e-02	k: 27903	n:1050000
GPRIN3   1050000 perm   645 sec   (1629 perm/sec)   p_kst 2.657429e-02   p_cons 7.561905e-04   p_joint 6.819048e-04

Joint ci ratio: 1.456358e-01	ci left: 6.332724e-04	ci right 7.336395e-04	k: 723	n:1060000
Cons ci ratio: 1.385406e-01	ci left: 7.024249e-04	ci right 8.078811e-04	k: 799	n:1060000
KS ci ratio: 2.305502e-02	ci left: 2.624290e-02	ci right 2.685592e-02	k: 28141	n:1060000
GPRIN3   1060000 perm   656 sec   (1617 perm/sec)   p_kst 2.654811e-02   p_cons 7.537736e-04   p_joint 6.820755e-04

Joint ci ratio: 1.450361e-01	ci left: 6.327575e-04	ci right 7.325943e-04	k: 729	n:1070000
Cons ci ratio: 1.379384e-01	ci left: 7.021760e-04	ci right 8.070990e-04	k: 806	n:1070000
KS ci ratio: 2.294101e-02	ci left: 2.625782e-02	ci right 2.686811e-02	k: 28421	n:1070000
GPRIN3   1070000 perm   666 sec   (1606 perm/sec)   p_kst 2.656168e-02   p_cons 7.532710e-04   p_joint 6.813084e-04

Joint ci ratio: 1.463464e-01	ci left: 6.153000e-04	ci right 7.133360e-04	k: 716	n:1080000
Cons ci ratio: 1.375981e-01	ci left: 6.992504e-04	ci right 8.034572e-04	k: 810	n:1080000
KS ci ratio: 2.283318e-02	ci left: 2.626234e-02	ci right 2.686983e-02	k: 28690	n:1080000
GPRIN3   1080000 perm   677 sec   (1595 perm/sec)   p_kst 2.656481e-02   p_cons 7.500000e-04   p_joint 6.629630e-04

Joint ci ratio: 1.317903e-01	ci left: 7.575534e-04	ci right 8.653112e-04	k: 883	n:1090000
Cons ci ratio: 1.370081e-01	ci left: 6.990366e-04	ci right 8.027285e-04	k: 817	n:1090000
KS ci ratio: 2.272322e-02	ci left: 2.627500e-02	ci right 2.687981e-02	k: 28968	n:1090000
GPRIN3   1090000 perm   688 sec   (1585 perm/sec)   p_kst 2.657615e-02   p_cons 7.495413e-04   p_joint 8.100917e-04

Joint ci ratio: 1.311245e-01	ci left: 7.585794e-04	ci right 8.658954e-04	k: 892	n:1100000
Cons ci ratio: 1.360959e-01	ci left: 7.023402e-04	ci right 8.057723e-04	k: 828	n:1100000
KS ci ratio: 2.263711e-02	ci left: 2.623680e-02	ci right 2.683842e-02	k: 29190	n:1100000
GPRIN3   1100000 perm   699 sec   (1574 perm/sec)   p_kst 2.653636e-02   p_cons 7.527273e-04   p_joint 8.109091e-04

Joint ci ratio: 1.305411e-01	ci left: 7.587166e-04	ci right 8.655375e-04	k: 900	n:1110000
Cons ci ratio: 1.353630e-01	ci left: 7.038456e-04	ci right 8.068963e-04	k: 837	n:1110000
KS ci ratio: 2.253781e-02	ci left: 2.623155e-02	ci right 2.683038e-02	k: 29448	n:1110000
GPRIN3   1110000 perm   709 sec   (1566 perm/sec)   p_kst 2.652973e-02   p_cons 7.540541e-04   p_joint 8.108108e-04

Joint ci ratio: 1.298939e-01	ci left: 7.597163e-04	ci right 8.661068e-04	k: 909	n:1120000
Cons ci ratio: 1.344038e-01	ci left: 7.079141e-04	ci right 8.107674e-04	k: 849	n:1120000
KS ci ratio: 2.244213e-02	ci left: 2.622108e-02	ci right 2.681709e-02	k: 29700	n:1120000
GPRIN3   1120000 perm   718 sec   (1559 perm/sec)   p_kst 2.651786e-02   p_cons 7.580357e-04   p_joint 8.116071e-04

Joint ci ratio: 1.289756e-01	ci left: 7.641252e-04	ci right 8.703187e-04	k: 922	n:1130000
Cons ci ratio: 1.336978e-01	ci left: 7.093470e-04	ci right 8.118240e-04	k: 858	n:1130000
KS ci ratio: 2.234536e-02	ci left: 2.621607e-02	ci right 2.680937e-02	k: 29958	n:1130000
GPRIN3   1130000 perm   728 sec   (1552 perm/sec)   p_kst 2.651150e-02   p_cons 7.592920e-04   p_joint 8.159292e-04

Joint ci ratio: 1.295391e-01	ci left: 7.506314e-04	ci right 8.554404e-04	k: 914	n:1140000
Cons ci ratio: 1.327733e-01	ci left: 7.133002e-04	ci right 8.155796e-04	k: 870	n:1140000
KS ci ratio: 2.223435e-02	ci left: 2.624693e-02	ci right 2.683794e-02	k: 30257	n:1140000
GPRIN3   1140000 perm   738 sec   (1545 perm/sec)   p_kst 2.654123e-02   p_cons 7.631579e-04   p_joint 8.017544e-04

Joint ci ratio: 1.288369e-01	ci left: 7.525188e-04	ci right 8.569783e-04	k: 924	n:1150000
Cons ci ratio: 1.322430e-01	ci left: 7.129827e-04	ci right 8.147762e-04	k: 877	n:1150000
KS ci ratio: 2.214433e-02	ci left: 2.623228e-02	ci right 2.682054e-02	k: 30504	n:1150000
GPRIN3   1150000 perm   748 sec   (1538 perm/sec)   p_kst 2.652522e-02   p_cons 7.626087e-04   p_joint 8.034783e-04

Joint ci ratio: 1.306886e-01	ci left: 7.243447e-04	ci right 8.264504e-04	k: 898	n:1160000
Cons ci ratio: 1.316446e-01	ci left: 7.135053e-04	ci right 8.148763e-04	k: 885	n:1160000
KS ci ratio: 2.204840e-02	ci left: 2.623419e-02	ci right 2.681990e-02	k: 30770	n:1160000
GPRIN3   1160000 perm   759 sec   (1528 perm/sec)   p_kst 2.652586e-02   p_cons 7.629310e-04   p_joint 7.741379e-04

Joint ci ratio: 1.296824e-01	ci left: 7.297300e-04	ci right 8.317419e-04	k: 912	n:1170000
Cons ci ratio: 1.311277e-01	ci left: 7.131932e-04	ci right 8.140910e-04	k: 892	n:1170000
KS ci ratio: 2.195444e-02	ci left: 2.623436e-02	ci right 2.681756e-02	k: 31034	n:1170000
GPRIN3   1170000 perm   771 sec   (1518 perm/sec)   p_kst 2.652479e-02   p_cons 7.623932e-04   p_joint 7.794872e-04

Joint ci ratio: 1.292585e-01	ci left: 7.284658e-04	ci right 8.299426e-04	k: 918	n:1180000
Cons ci ratio: 1.305442e-01	ci left: 7.137069e-04	ci right 8.141934e-04	k: 900	n:1180000
KS ci ratio: 2.187028e-02	ci left: 2.621431e-02	ci right 2.679480e-02	k: 31274	n:1180000
GPRIN3   1180000 perm   782 sec   (1509 perm/sec)   p_kst 2.650339e-02   p_cons 7.627119e-04   p_joint 7.779661e-04

Joint ci ratio: 1.286301e-01	ci left: 7.296634e-04	ci right 8.307751e-04	k: 927	n:1190000
Cons ci ratio: 1.298970e-01	ci left: 7.150261e-04	ci right 8.151606e-04	k: 909	n:1190000
KS ci ratio: 2.178459e-02	ci left: 2.620045e-02	ci right 2.677833e-02	k: 31521	n:1190000
GPRIN3   1190000 perm   793 sec   (1500 perm/sec)   p_kst 2.648824e-02   p_cons 7.638655e-04   p_joint 7.789916e-04

Joint ci ratio: 1.291890e-01	ci left: 7.171309e-04	ci right 8.169708e-04	k: 919	n:1200000
Cons ci ratio: 1.287694e-01	ci left: 7.219696e-04	ci right 8.221319e-04	k: 925	n:1200000
KS ci ratio: 2.168484e-02	ci left: 2.622247e-02	ci right 2.679815e-02	k: 31811	n:1200000
GPRIN3   1200000 perm   805 sec   (1490 perm/sec)   p_kst 2.650917e-02   p_cons 7.708333e-04   p_joint 7.658333e-04

Joint ci ratio: 1.286309e-01	ci left: 7.176025e-04	ci right 8.170436e-04	k: 927	n:1210000
Cons ci ratio: 1.284924e-01	ci left: 7.192023e-04	ci right 8.187496e-04	k: 929	n:1210000
KS ci ratio: 2.159785e-02	ci left: 2.621700e-02	ci right 2.679023e-02	k: 32068	n:1210000
GPRIN3   1210000 perm   817 sec   (1481 perm/sec)   p_kst 2.650248e-02   p_cons 7.677686e-04   p_joint 7.661157e-04

Joint ci ratio: 1.283548e-01	ci left: 7.148938e-04	ci right 8.137307e-04	k: 931	n:1220000
Cons ci ratio: 1.281485e-01	ci left: 7.172740e-04	ci right 8.162685e-04	k: 934	n:1220000
KS ci ratio: 2.151600e-02	ci left: 2.620184e-02	ci right 2.677254e-02	k: 32313	n:1220000
GPRIN3   1220000 perm   829 sec   (1472 perm/sec)   p_kst 2.648607e-02   p_cons 7.655738e-04   p_joint 7.631148e-04

Joint ci ratio: 1.282863e-01	ci left: 7.098684e-04	ci right 8.079542e-04	k: 932	n:1230000
Cons ci ratio: 1.277394e-01	ci left: 7.161644e-04	ci right 8.146663e-04	k: 940	n:1230000
KS ci ratio: 2.143304e-02	ci left: 2.619179e-02	ci right 2.676004e-02	k: 32564	n:1230000
GPRIN3   1230000 perm   841 sec   (1463 perm/sec)   p_kst 2.647480e-02   p_cons 7.642276e-04   p_joint 7.577236e-04

Joint ci ratio: 1.276042e-01	ci left: 7.119501e-04	ci right 8.097609e-04	k: 942	n:1240000
Cons ci ratio: 1.273342e-01	ci left: 7.150731e-04	ci right 8.130894e-04	k: 946	n:1240000
KS ci ratio: 2.134202e-02	ci left: 2.620356e-02	ci right 2.676962e-02	k: 32842	n:1240000
GPRIN3   1240000 perm   853 sec   (1453 perm/sec)   p_kst 2.648548e-02   p_cons 7.629032e-04   p_joint 7.596774e-04

Joint ci ratio: 1.276046e-01	ci left: 7.062544e-04	ci right 8.032830e-04	k: 942	n:1250000
Cons ci ratio: 1.266670e-01	ci left: 7.170984e-04	ci right 8.148387e-04	k: 956	n:1250000
KS ci ratio: 2.125314e-02	ci left: 2.621276e-02	ci right 2.677663e-02	k: 33117	n:1250000
GPRIN3   1250000 perm   865 sec   (1444 perm/sec)   p_kst 2.649360e-02   p_cons 7.648000e-04   p_joint 7.536000e-04

Joint ci ratio: 1.274697e-01	ci left: 7.021858e-04	ci right 7.985457e-04	k: 944	n:1260000
Cons ci ratio: 1.262719e-01	ci left: 7.160184e-04	ci right 8.132842e-04	k: 962	n:1260000
KS ci ratio: 2.117415e-02	ci left: 2.620050e-02	ci right 2.676199e-02	k: 33365	n:1260000
GPRIN3   1260000 perm   877 sec   (1436 perm/sec)   p_kst 2.648016e-02   p_cons 7.634921e-04   p_joint 7.492063e-04

Joint ci ratio: 1.264696e-01	ci left: 7.080928e-04	ci right 8.044438e-04	k: 959	n:1270000
Cons ci ratio: 1.257506e-01	ci left: 7.164811e-04	ci right 8.133780e-04	k: 970	n:1270000
KS ci ratio: 2.108670e-02	ci left: 2.621116e-02	ci right 2.677053e-02	k: 33642	n:1270000
GPRIN3   1270000 perm   890 sec   (1427 perm/sec)   p_kst 2.648976e-02   p_cons 7.637795e-04   p_joint 7.551181e-04

Joint ci ratio: 1.262727e-01	ci left: 7.048304e-04	ci right 8.005769e-04	k: 962	n:1280000
Cons ci ratio: 1.253640e-01	ci left: 7.154239e-04	ci right 8.118582e-04	k: 976	n:1280000
KS ci ratio: 2.099969e-02	ci left: 2.622321e-02	ci right 2.678050e-02	k: 33921	n:1280000
GPRIN3   1280000 perm   902 sec   (1420 perm/sec)   p_kst 2.650078e-02   p_cons 7.625000e-04   p_joint 7.515625e-04

Joint ci ratio: 1.258812e-01	ci left: 7.038710e-04	ci right 7.991687e-04	k: 968	n:1290000
Cons ci ratio: 1.251722e-01	ci left: 7.121306e-04	ci right 8.079633e-04	k: 979	n:1290000
KS ci ratio: 2.091814e-02	ci left: 2.622428e-02	ci right 2.677940e-02	k: 34186	n:1290000
GPRIN3   1290000 perm   912 sec   (1414 perm/sec)   p_kst 2.650078e-02   p_cons 7.589147e-04   p_joint 7.503876e-04

Joint ci ratio: 1.252365e-01	ci left: 7.059074e-04	ci right 8.009550e-04	k: 978	n:1300000
Cons ci ratio: 1.244754e-01	ci left: 7.148501e-04	ci right 8.104737e-04	k: 990	n:1300000
KS ci ratio: 2.083971e-02	ci left: 2.621998e-02	ci right 2.677290e-02	k: 34444	n:1300000
GPRIN3   1300000 perm   923 sec   (1408 perm/sec)   p_kst 2.649538e-02   p_cons 7.615385e-04   p_joint 7.523077e-04

Joint ci ratio: 1.247279e-01	ci left: 7.064347e-04	ci right 8.011385e-04	k: 986	n:1310000
Cons ci ratio: 1.240381e-01	ci left: 7.145706e-04	ci right 8.097964e-04	k: 997	n:1310000
KS ci ratio: 2.075570e-02	ci left: 2.623170e-02	ci right 2.678261e-02	k: 34723	n:1310000
GPRIN3   1310000 perm   936 sec   (1400 perm/sec)   p_kst 2.650611e-02   p_cons 7.610687e-04   p_joint 7.526718e-04

Joint ci ratio: 1.240385e-01	ci left: 7.091571e-04	ci right 8.036617e-04	k: 997	n:1320000
Cons ci ratio: 1.235439e-01	ci left: 7.150301e-04	ci right 8.099097e-04	k: 1005	n:1320000
KS ci ratio: 2.068698e-02	ci left: 2.620782e-02	ci right 2.675639e-02	k: 34955	n:1320000
GPRIN3   1320000 perm   948 sec   (1392 perm/sec)   p_kst 2.648106e-02   p_cons 7.613636e-04   p_joint 7.553030e-04

Joint ci ratio: 1.236058e-01	ci left: 7.089252e-04	ci right 8.030453e-04	k: 1004	n:1330000
Cons ci ratio: 1.234216e-01	ci left: 7.111112e-04	ci right 8.053705e-04	k: 1007	n:1330000
KS ci ratio: 2.061201e-02	ci left: 2.620150e-02	ci right 2.674793e-02	k: 35210	n:1330000
GPRIN3   1330000 perm   961 sec   (1384 perm/sec)   p_kst 2.647368e-02   p_cons 7.571429e-04   p_joint 7.548872e-04

Joint ci ratio: 1.185762e-01	ci left: 7.665957e-04	ci right 8.639410e-04	k: 1091	n:1340000
Cons ci ratio: 1.227534e-01	ci left: 7.137606e-04	ci right 8.078218e-04	k: 1018	n:1340000
KS ci ratio: 2.053013e-02	ci left: 2.621459e-02	ci right 2.675910e-02	k: 35491	n:1340000
GPRIN3   1340000 perm   974 sec   (1376 perm/sec)   p_kst 2.648582e-02   p_cons 7.597015e-04   p_joint 8.141791e-04

Joint ci ratio: 1.178231e-01	ci left: 7.709810e-04	ci right 8.682181e-04	k: 1105	n:1350000
Cons ci ratio: 1.223340e-01	ci left: 7.134998e-04	ci right 8.071820e-04	k: 1025	n:1350000
KS ci ratio: 2.045391e-02	ci left: 2.621570e-02	ci right 2.675818e-02	k: 35756	n:1350000
GPRIN3   1350000 perm   987 sec   (1368 perm/sec)   p_kst 2.648593e-02   p_cons 7.592593e-04   p_joint 8.185185e-04

Joint ci ratio: 1.173466e-01	ci left: 7.717351e-04	ci right 8.686463e-04	k: 1114	n:1360000
Cons ci ratio: 1.220371e-01	ci left: 7.118175e-04	ci right 8.050356e-04	k: 1030	n:1360000
KS ci ratio: 2.037795e-02	ci left: 2.621826e-02	ci right 2.675876e-02	k: 36023	n:1360000
GPRIN3   1360000 perm   1000 sec   (1360 perm/sec)   p_kst 2.648750e-02   p_cons 7.573529e-04   p_joint 8.191176e-04

Joint ci ratio: 1.171892e-01	ci left: 7.682275e-04	ci right 8.645599e-04	k: 1117	n:1370000
Cons ci ratio: 1.214494e-01	ci left: 7.136988e-04	ci right 8.066809e-04	k: 1040	n:1370000
KS ci ratio: 2.030571e-02	ci left: 2.621352e-02	ci right 2.675198e-02	k: 36280	n:1370000
GPRIN3   1370000 perm   1013 sec   (1353 perm/sec)   p_kst 2.648175e-02   p_cons 7.591241e-04   p_joint 8.153285e-04

Joint ci ratio: 1.091331e-01	ci left: 8.830736e-04	ci right 9.857062e-04	k: 1288	n:1380000
Cons ci ratio: 1.211010e-01	ci left: 7.127430e-04	ci right 8.053150e-04	k: 1046	n:1380000
KS ci ratio: 2.023224e-02	ci left: 2.621391e-02	ci right 2.675040e-02	k: 36544	n:1380000
GPRIN3   1380000 perm   1026 sec   (1345 perm/sec)   p_kst 2.648116e-02   p_cons 7.579710e-04   p_joint 9.333333e-04

Joint ci ratio: 1.087541e-01	ci left: 8.830189e-04	ci right 9.852660e-04	k: 1297	n:1390000
Cons ci ratio: 1.204697e-01	ci left: 7.152900e-04	ci right 8.076740e-04	k: 1057	n:1390000
KS ci ratio: 2.016040e-02	ci left: 2.621214e-02	ci right 2.674667e-02	k: 36805	n:1390000
GPRIN3   1390000 perm   1039 sec   (1338 perm/sec)   p_kst 2.647842e-02   p_cons 7.604317e-04   p_joint 9.330935e-04

Joint ci ratio: 1.082548e-01	ci left: 8.850505e-04	ci right 9.870323e-04	k: 1309	n:1400000
Cons ci ratio: 1.200168e-01	ci left: 7.157232e-04	ci right 8.077910e-04	k: 1065	n:1400000
KS ci ratio: 2.008905e-02	ci left: 2.621111e-02	ci right 2.674371e-02	k: 37067	n:1400000
GPRIN3   1400000 perm   1052 sec   (1330 perm/sec)   p_kst 2.647643e-02   p_cons 7.607143e-04   p_joint 9.350000e-04

Joint ci ratio: 1.079258e-01	ci left: 8.842939e-04	ci right 9.858591e-04	k: 1317	n:1410000
Cons ci ratio: 1.197364e-01	ci left: 7.140868e-04	ci right 8.057144e-04	k: 1070	n:1410000
KS ci ratio: 2.002424e-02	ci left: 2.619528e-02	ci right 2.672582e-02	k: 37308	n:1410000
GPRIN3   1410000 perm   1066 sec   (1322 perm/sec)   p_kst 2.645957e-02   p_cons 7.588652e-04   p_joint 9.340426e-04

Joint ci ratio: 1.075998e-01	ci left: 8.835484e-04	ci right 9.847021e-04	k: 1325	n:1420000
Cons ci ratio: 1.194025e-01	ci left: 7.131570e-04	ci right 8.043920e-04	k: 1076	n:1420000
KS ci ratio: 1.995295e-02	ci left: 2.619789e-02	ci right 2.672658e-02	k: 37575	n:1420000
GPRIN3   1420000 perm   1080 sec   (1315 perm/sec)   p_kst 2.646127e-02   p_cons 7.577465e-04   p_joint 9.330986e-04

Joint ci ratio: 1.074380e-01	ci left: 8.800916e-04	ci right 9.806886e-04	k: 1329	n:1430000
Cons ci ratio: 1.193473e-01	ci left: 7.088482e-04	ci right 7.994872e-04	k: 1077	n:1430000
KS ci ratio: 1.988674e-02	ci left: 2.618934e-02	ci right 2.671608e-02	k: 37826	n:1430000
GPRIN3   1430000 perm   1093 sec   (1308 perm/sec)   p_kst 2.645175e-02   p_cons 7.531469e-04   p_joint 9.293706e-04

Joint ci ratio: 1.071164e-01	ci left: 8.793864e-04	ci right 9.795828e-04	k: 1337	n:1440000
Cons ci ratio: 1.185796e-01	ci left: 7.133587e-04	ci right 8.039465e-04	k: 1091	n:1440000
KS ci ratio: 1.982225e-02	ci left: 2.617814e-02	ci right 2.670293e-02	k: 38073	n:1440000
GPRIN3   1440000 perm   1107 sec   (1301 perm/sec)   p_kst 2.643958e-02   p_cons 7.576389e-04   p_joint 9.284722e-04

Joint ci ratio: 1.066787e-01	ci left: 8.807050e-04	ci right 9.806160e-04	k: 1348	n:1450000
Cons ci ratio: 1.181476e-01	ci left: 7.137929e-04	ci right 8.040825e-04	k: 1099	n:1450000
KS ci ratio: 1.975230e-02	ci left: 2.618289e-02	ci right 2.670590e-02	k: 38343	n:1450000
GPRIN3   1450000 perm   1120 sec   (1294 perm/sec)   p_kst 2.644345e-02   p_cons 7.579310e-04   p_joint 9.296552e-04

Joint ci ratio: 1.064031e-01	ci left: 8.793395e-04	ci right 9.788217e-04	k: 1355	n:1460000
Cons ci ratio: 1.179335e-01	ci left: 7.115627e-04	ci right 8.013957e-04	k: 1103	n:1460000
KS ci ratio: 1.968177e-02	ci left: 2.619099e-02	ci right 2.671227e-02	k: 38618	n:1460000
GPRIN3   1460000 perm   1134 sec   (1288 perm/sec)   p_kst 2.645068e-02   p_cons 7.554795e-04   p_joint 9.280822e-04

Joint ci ratio: 1.064821e-01	ci left: 8.720331e-04	ci right 9.707665e-04	k: 1353	n:1470000
Cons ci ratio: 1.176674e-01	ci left: 7.100232e-04	ci right 7.994456e-04	k: 1108	n:1470000
KS ci ratio: 1.961459e-02	ci left: 2.619220e-02	ci right 2.671171e-02	k: 38883	n:1470000
GPRIN3   1470000 perm   1148 sec   (1281 perm/sec)   p_kst 2.645102e-02   p_cons 7.537415e-04   p_joint 9.204082e-04

Joint ci ratio: 1.060910e-01	ci left: 8.727182e-04	ci right 9.711436e-04	k: 1363	n:1480000
Cons ci ratio: 1.172978e-01	ci left: 7.098165e-04	ci right 7.989126e-04	k: 1115	n:1480000
KS ci ratio: 1.955245e-02	ci left: 2.618197e-02	ci right 2.669961e-02	k: 39131	n:1480000
GPRIN3   1480000 perm   1162 sec   (1274 perm/sec)   p_kst 2.643986e-02   p_cons 7.533784e-04   p_joint 9.209459e-04

Joint ci ratio: 1.059747e-01	ci left: 8.688210e-04	ci right 9.666927e-04	k: 1366	n:1490000
Cons ci ratio: 1.170883e-01	ci left: 7.076585e-04	ci right 7.963141e-04	k: 1119	n:1490000
KS ci ratio: 1.948835e-02	ci left: 2.617856e-02	ci right 2.669442e-02	k: 39389	n:1490000
GPRIN3   1490000 perm   1177 sec   (1266 perm/sec)   p_kst 2.643557e-02   p_cons 7.510067e-04   p_joint 9.167785e-04

Joint ci ratio: 1.057430e-01	ci left: 8.669229e-04	ci right 9.643540e-04	k: 1372	n:1500000
Cons ci ratio: 1.166724e-01	ci left: 7.081181e-04	ci right 7.964945e-04	k: 1127	n:1500000
KS ci ratio: 1.942967e-02	ci left: 2.616260e-02	ci right 2.667657e-02	k: 39628	n:1500000
GPRIN3   1500000 perm   1191 sec   (1260 perm/sec)   p_kst 2.641867e-02   p_cons 7.513333e-04   p_joint 9.146667e-04

Joint ci ratio: 1.053219e-01	ci left: 8.682742e-04	ci right 9.654445e-04	k: 1383	n:1510000
Cons ci ratio: 1.159040e-01	ci left: 7.130736e-04	ci right 8.014422e-04	k: 1142	n:1510000
KS ci ratio: 1.936278e-02	ci left: 2.616991e-02	ci right 2.668224e-02	k: 39902	n:1510000
GPRIN3   1510000 perm   1205 sec   (1253 perm/sec)   p_kst 2.642517e-02   p_cons 7.562914e-04   p_joint 9.158940e-04

Joint ci ratio: 1.048682e-01	ci left: 8.702491e-04	ci right 9.671950e-04	k: 1395	n:1520000
Cons ci ratio: 1.155005e-01	ci left: 7.134931e-04	ci right 8.015849e-04	k: 1150	n:1520000
KS ci ratio: 1.929485e-02	ci left: 2.618172e-02	ci right 2.669246e-02	k: 40183	n:1520000
GPRIN3   1520000 perm   1220 sec   (1246 perm/sec)   p_kst 2.643618e-02   p_cons 7.565789e-04   p_joint 9.177632e-04

Joint ci ratio: 1.044202e-01	ci left: 8.721991e-04	ci right 9.689218e-04	k: 1407	n:1530000
Cons ci ratio: 1.150515e-01	ci left: 7.145426e-04	ci right 8.023977e-04	k: 1159	n:1530000
KS ci ratio: 1.922934e-02	ci left: 2.618882e-02	ci right 2.669794e-02	k: 40457	n:1530000
GPRIN3   1530000 perm   1234 sec   (1239 perm/sec)   p_kst 2.644248e-02   p_cons 7.575163e-04   p_joint 9.196078e-04

Joint ci ratio: 1.039780e-01	ci left: 8.741247e-04	ci right 9.706252e-04	k: 1419	n:1540000
Cons ci ratio: 1.145097e-01	ci left: 7.168405e-04	ci right 8.045351e-04	k: 1170	n:1540000
KS ci ratio: 1.916643e-02	ci left: 2.619066e-02	ci right 2.669814e-02	k: 40723	n:1540000
GPRIN3   1540000 perm   1249 sec   (1233 perm/sec)   p_kst 2.644351e-02   p_cons 7.597403e-04   p_joint 9.214286e-04

Joint ci ratio: 9.645232e-02	ci left: 1.013162e-03	ci right 1.116459e-03	k: 1649	n:1550000
Cons ci ratio: 1.139273e-01	ci left: 7.197365e-04	ci right 8.073075e-04	k: 1182	n:1550000
KS ci ratio: 1.910030e-02	ci left: 2.620275e-02	ci right 2.670869e-02	k: 41005	n:1550000
GPRIN3   1550000 perm   1263 sec   (1227 perm/sec)   p_kst 2.645484e-02   p_cons 7.625806e-04   p_joint 1.063871e-03

Joint ci ratio: 9.619039e-02	ci left: 1.012297e-03	ci right 1.115210e-03	k: 1658	n:1560000
Cons ci ratio: 1.134963e-01	ci left: 7.207280e-04	ci right 8.080657e-04	k: 1191	n:1560000
KS ci ratio: 1.903556e-02	ci left: 2.621278e-02	ci right 2.671718e-02	k: 41284	n:1560000
GPRIN3   1560000 perm   1278 sec   (1221 perm/sec)   p_kst 2.646410e-02   p_cons 7.634615e-04   p_joint 1.062821e-03

Joint ci ratio: 9.639451e-02	ci left: 1.001498e-03	ci right 1.103542e-03	k: 1651	n:1570000
Cons ci ratio: 1.127886e-01	ci left: 7.254212e-04	ci right 8.127430e-04	k: 1206	n:1570000
KS ci ratio: 1.897757e-02	ci left: 2.620620e-02	ci right 2.670892e-02	k: 41537	n:1570000
GPRIN3   1570000 perm   1292 sec   (1215 perm/sec)   p_kst 2.645669e-02   p_cons 7.681529e-04   p_joint 1.051592e-03

Joint ci ratio: 9.624913e-02	ci left: 9.982478e-04	ci right 1.099798e-03	k: 1656	n:1580000
Cons ci ratio: 1.125558e-01	ci left: 7.239053e-04	ci right 8.108528e-04	k: 1211	n:1580000
KS ci ratio: 1.892127e-02	ci left: 2.619656e-02	ci right 2.669759e-02	k: 41785	n:1580000
GPRIN3   1580000 perm   1305 sec   (1211 perm/sec)   p_kst 2.644620e-02   p_cons 7.664557e-04   p_joint 1.048101e-03

Joint ci ratio: 9.593122e-02	ci left: 9.987215e-04	ci right 1.099965e-03	k: 1667	n:1590000
Cons ci ratio: 1.121402e-01	ci left: 7.248538e-04	ci right 8.115725e-04	k: 1220	n:1590000
KS ci ratio: 1.886041e-02	ci left: 2.620081e-02	ci right 2.670029e-02	k: 42055	n:1590000
GPRIN3   1590000 perm   1318 sec   (1206 perm/sec)   p_kst 2.644969e-02   p_cons 7.672956e-04   p_joint 1.048428e-03

Joint ci ratio: 8.936104e-02	ci left: 1.147560e-03	ci right 1.255509e-03	k: 1921	n:1600000
Cons ci ratio: 1.116837e-01	ci left: 7.263985e-04	ci right 8.129250e-04	k: 1230	n:1600000
KS ci ratio: 1.880423e-02	ci left: 2.619381e-02	ci right 2.669165e-02	k: 42307	n:1600000
GPRIN3   1600000 perm   1331 sec   (1202 perm/sec)   p_kst 2.644188e-02   p_cons 7.687500e-04   p_joint 1.200625e-03

Joint ci ratio: 8.917576e-02	ci left: 1.145290e-03	ci right 1.252791e-03	k: 1929	n:1610000
Cons ci ratio: 1.114126e-01	ci left: 7.255095e-04	ci right 8.117064e-04	k: 1236	n:1610000
KS ci ratio: 1.874538e-02	ci left: 2.619556e-02	ci right 2.669186e-02	k: 42573	n:1610000
GPRIN3   1610000 perm   1344 sec   (1198 perm/sec)   p_kst 2.644286e-02   p_cons 7.677019e-04   p_joint 1.198137e-03

Joint ci ratio: 8.903763e-02	ci left: 1.141841e-03	ci right 1.248844e-03	k: 1935	n:1620000
Cons ci ratio: 1.111882e-01	ci left: 7.240315e-04	ci right 8.098682e-04	k: 1241	n:1620000
KS ci ratio: 1.868417e-02	ci left: 2.620528e-02	ci right 2.670012e-02	k: 42852	n:1620000
GPRIN3   1620000 perm   1357 sec   (1194 perm/sec)   p_kst 2.645185e-02   p_cons 7.660494e-04   p_joint 1.194444e-03

Joint ci ratio: 8.874016e-02	ci left: 1.142634e-03	ci right 1.249335e-03	k: 1948	n:1630000
Cons ci ratio: 1.109206e-01	ci left: 7.231683e-04	ci right 8.086829e-04	k: 1247	n:1630000
KS ci ratio: 1.862977e-02	ci left: 2.619778e-02	ci right 2.669103e-02	k: 43103	n:1630000
GPRIN3   1630000 perm   1370 sec   (1190 perm/sec)   p_kst 2.644356e-02   p_cons 7.650307e-04   p_joint 1.195092e-03

Joint ci ratio: 8.862674e-02	ci left: 1.138648e-03	ci right 1.244833e-03	k: 1953	n:1640000
Cons ci ratio: 1.108320e-01	ci left: 7.199443e-04	ci right 8.050053e-04	k: 1249	n:1640000
KS ci ratio: 1.857783e-02	ci left: 2.618491e-02	ci right 2.667652e-02	k: 43345	n:1640000
GPRIN3   1640000 perm   1384 sec   (1185 perm/sec)   p_kst 2.642988e-02   p_cons 7.615854e-04   p_joint 1.190854e-03

Joint ci ratio: 8.831088e-02	ci left: 1.140044e-03	ci right 1.245961e-03	k: 1967	n:1650000
Cons ci ratio: 1.105230e-01	ci left: 7.197060e-04	ci right 8.044863e-04	k: 1256	n:1650000
KS ci ratio: 1.851737e-02	ci left: 2.619693e-02	ci right 2.668716e-02	k: 43628	n:1650000
GPRIN3   1650000 perm   1397 sec   (1181 perm/sec)   p_kst 2.644121e-02   p_cons 7.612121e-04   p_joint 1.192121e-03

Joint ci ratio: 8.804287e-02	ci left: 1.140246e-03	ci right 1.245844e-03	k: 1979	n:1660000
Cons ci ratio: 1.101730e-01	ci left: 7.200567e-04	ci right 8.045923e-04	k: 1264	n:1660000
KS ci ratio: 1.846462e-02	ci left: 2.618902e-02	ci right 2.667769e-02	k: 43878	n:1660000
GPRIN3   1660000 perm   1410 sec   (1177 perm/sec)   p_kst 2.643253e-02   p_cons 7.614458e-04   p_joint 1.192169e-03

Joint ci ratio: 8.782143e-02	ci left: 1.139275e-03	ci right 1.244503e-03	k: 1989	n:1670000
Cons ci ratio: 1.099127e-01	ci left: 7.192389e-04	ci right 8.034660e-04	k: 1270	n:1670000
KS ci ratio: 1.840911e-02	ci left: 2.619015e-02	ci right 2.667736e-02	k: 44143	n:1670000
GPRIN3   1670000 perm   1425 sec   (1172 perm/sec)   p_kst 2.643293e-02   p_cons 7.604790e-04   p_joint 1.191018e-03

Joint ci ratio: 9.613606e-02	ci left: 9.411506e-04	ci right 1.036774e-03	k: 1660	n:1680000
Cons ci ratio: 1.094828e-01	ci left: 7.207468e-04	ci right 8.047991e-04	k: 1280	n:1680000
KS ci ratio: 1.810705e-02	ci left: 2.689469e-02	ci right 2.738671e-02	k: 45595	n:1680000
GPRIN3   1680000 perm   1441 sec   (1166 perm/sec)   p_kst 2.713988e-02   p_cons 7.619048e-04   p_joint 9.880952e-04

Joint ci ratio: 9.581927e-02	ci left: 9.419343e-04	ci right 1.037304e-03	k: 1671	n:1690000
Cons ci ratio: 1.092698e-01	ci left: 7.193597e-04	ci right 8.030765e-04	k: 1285	n:1690000
KS ci ratio: 1.805753e-02	ci left: 2.688340e-02	ci right 2.737385e-02	k: 45846	n:1690000
GPRIN3   1690000 perm   1456 sec   (1160 perm/sec)   p_kst 2.712781e-02   p_cons 7.603550e-04   p_joint 9.887574e-04

Joint ci ratio: 9.553401e-02	ci left: 9.421351e-04	ci right 1.037225e-03	k: 1681	n:1700000
Cons ci ratio: 1.089736e-01	ci left: 7.191334e-04	ci right 8.025825e-04	k: 1292	n:1700000
KS ci ratio: 1.800961e-02	ci left: 2.686872e-02	ci right 2.735759e-02	k: 46091	n:1700000
GPRIN3   1700000 perm   1473 sec   (1154 perm/sec)   p_kst 2.711235e-02   p_cons 7.600000e-04   p_joint 9.888235e-04

Joint ci ratio: 9.533591e-02	ci left: 9.406214e-04	ci right 1.035351e-03	k: 1688	n:1710000
Cons ci ratio: 1.087636e-01	ci left: 7.177723e-04	ci right 8.008926e-04	k: 1297	n:1710000
KS ci ratio: 1.796407e-02	ci left: 2.684840e-02	ci right 2.733566e-02	k: 46326	n:1710000
GPRIN3   1710000 perm   1489 sec   (1149 perm/sec)   p_kst 2.709123e-02   p_cons 7.584795e-04   p_joint 9.871345e-04

Joint ci ratio: 8.731920e-02	ci left: 1.119235e-03	ci right 1.221991e-03	k: 2012	n:1720000
Cons ci ratio: 9.851058e-02	ci left: 8.744494e-04	ci right 9.656166e-04	k: 1581	n:1720000
KS ci ratio: 1.791077e-02	ci left: 2.685205e-02	ci right 2.733791e-02	k: 46602	n:1720000
GPRIN3   1720000 perm   1505 sec   (1142 perm/sec)   p_kst 2.709419e-02   p_cons 9.191860e-04   p_joint 1.169767e-03

Outputting figure to mutsig2_images.part000000000074/GPRIN3.5_2335_1720000_0.027094_0.00091919_0.0011698.png
                gene_name: GPRIN3
               theta_stop: 0.099 
                    nperm: 1720000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.00092 
      ci_cons_bounds_left: 0.00087 
     ci_cons_bounds_right: 0.00097 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 52 percent done.
GRAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
Cons ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
KS ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
GRAP2   10000 perm   2 sec   (5983 perm/sec)   p_kst 5.013000e-01   p_cons 3.172000e-01   p_joint 4.380000e-01

Outputting figure to mutsig2_images.part000000000074/GRAP2.5_1021_10000_0.5013_0.3172_0.438.png
                gene_name: GRAP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 53 percent done.
GPR61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
GPR61   10000 perm   1 sec   (6977 perm/sec)   p_kst 4.001000e-01   p_cons 2.420000e-01   p_joint 6.177000e-01

Outputting figure to mutsig2_images.part000000000074/GPR61.4_1360_10000_0.4001_0.242_0.6177.png
                gene_name: GPR61
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 55 percent done.
GPR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
KS ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
GPR63   10000 perm   1 sec   (7046 perm/sec)   p_kst 4.740000e-01   p_cons 8.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR63.4_1264_10000_0.474_0.8349_1.png
                gene_name: GPR63
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
GPR83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
KS ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
GPR83   10000 perm   1 sec   (7080 perm/sec)   p_kst 9.248000e-01   p_cons 8.312000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR83.4_1288_10000_0.9248_0.8312_1.png
                gene_name: GPR83
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
GPR84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
Cons ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
KS ci ratio: 1.745870e-02	ci left: 8.270690e-01	ci right 8.417356e-01	k: 8345	n:10000
GPR84   10000 perm   1 sec   (6746 perm/sec)   p_kst 8.345000e-01   p_cons 1.814000e-01   p_joint 5.651000e-01

Outputting figure to mutsig2_images.part000000000074/GPR84.4_1195_10000_0.8345_0.1814_0.5651.png
                gene_name: GPR84
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 59 percent done.
GPX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
GPX5   10000 perm   1 sec   (7449 perm/sec)   p_kst 2.302000e-01   p_cons 9.770000e-02   p_joint 2.045000e-01

Joint ci ratio: 6.066666e-02	ci left: 1.674349e-01	ci right 1.779604e-01	k: 3453	n:20000
Cons ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
KS ci ratio: 5.084557e-02	ci left: 2.232408e-01	ci right 2.349380e-01	k: 4581	n:20000
GPX5   20000 perm   3 sec   (6590 perm/sec)   p_kst 2.290500e-01   p_cons 9.830000e-02   p_joint 1.726500e-01

Outputting figure to mutsig2_images.part000000000074/GPX5.4_686_20000_0.22905_0.0983_0.17265.png
                gene_name: GPX5
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
GRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
KS ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
GRB2   10000 perm   1 sec   (6937 perm/sec)   p_kst 7.207000e-01   p_cons 4.924000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRB2.4_674_10000_0.7207_0.4924_1.png
                gene_name: GRB2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GPR34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
GPR34   10000 perm   1 sec   (6905 perm/sec)   p_kst 8.780000e-02   p_cons 2.360000e-02   p_joint 3.560000e-02

Joint ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
Cons ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
KS ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
GPR34   20000 perm   3 sec   (6155 perm/sec)   p_kst 8.935000e-02   p_cons 2.320000e-02   p_joint 2.330000e-02

Joint ci ratio: 2.062269e-01	ci left: 1.067210e-02	ci right 1.315710e-02	k: 356	n:30000
Cons ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
KS ci ratio: 7.158650e-02	ci left: 8.760454e-02	ci right 9.414161e-02	k: 2725	n:30000
GPR34   30000 perm   5 sec   (5860 perm/sec)   p_kst 9.083333e-02   p_cons 2.243333e-02   p_joint 1.186667e-02

Joint ci ratio: 1.975245e-01	ci left: 8.786519e-03	ci right 1.073564e-02	k: 389	n:40000
Cons ci ratio: 1.301516e-01	ci left: 2.073002e-02	ci right 2.363992e-02	k: 886	n:40000
KS ci ratio: 6.140007e-02	ci left: 8.962854e-02	ci right 9.533078e-02	k: 3698	n:40000
GPR34   40000 perm   7 sec   (5660 perm/sec)   p_kst 9.245000e-02   p_cons 2.215000e-02   p_joint 9.725000e-03

Joint ci ratio: 1.352616e-01	ci left: 1.540155e-02	ci right 1.765509e-02	k: 825	n:50000
Cons ci ratio: 1.160241e-01	ci left: 2.102354e-02	ci right 2.363233e-02	k: 1115	n:50000
KS ci ratio: 5.512020e-02	ci left: 8.932235e-02	ci right 9.440515e-02	k: 4592	n:50000
GPR34   50000 perm   9 sec   (5502 perm/sec)   p_kst 9.184000e-02   p_cons 2.230000e-02   p_joint 1.650000e-02

Joint ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
Cons ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
KS ci ratio: 5.018047e-02	ci left: 8.999539e-02	ci right 9.464413e-02	k: 5538	n:60000
GPR34   60000 perm   11 sec   (5373 perm/sec)   p_kst 9.230000e-02   p_cons 2.238333e-02   p_joint 1.251667e-02

Joint ci ratio: 1.100586e-01	ci left: 1.681947e-02	ci right 1.879222e-02	k: 1245	n:70000
Cons ci ratio: 9.752989e-02	ci left: 2.145589e-02	ci right 2.366964e-02	k: 1578	n:70000
KS ci ratio: 4.652624e-02	ci left: 8.992525e-02	ci right 9.422292e-02	k: 6444	n:70000
GPR34   70000 perm   13 sec   (5256 perm/sec)   p_kst 9.205714e-02   p_cons 2.254286e-02   p_joint 1.778571e-02

Joint ci ratio: 1.098257e-01	ci left: 1.481344e-02	ci right 1.654694e-02	k: 1253	n:80000
Cons ci ratio: 9.161005e-02	ci left: 2.134900e-02	ci right 2.341084e-02	k: 1789	n:80000
KS ci ratio: 4.393554e-02	ci left: 8.850819e-02	ci right 9.249656e-02	k: 7239	n:80000
GPR34   80000 perm   16 sec   (5143 perm/sec)   p_kst 9.048750e-02   p_cons 2.236250e-02   p_joint 1.566250e-02

Joint ci ratio: 1.094810e-01	ci left: 1.327498e-02	ci right 1.482324e-02	k: 1263	n:90000
Cons ci ratio: 8.632152e-02	ci left: 2.143220e-02	ci right 2.337653e-02	k: 2015	n:90000
KS ci ratio: 4.171919e-02	ci left: 8.746660e-02	ci right 9.120437e-02	k: 8039	n:90000
GPR34   90000 perm   18 sec   (5042 perm/sec)   p_kst 8.932222e-02   p_cons 2.238889e-02   p_joint 1.403333e-02

Joint ci ratio: 1.066485e-01	ci left: 1.261860e-02	ci right 1.404983e-02	k: 1332	n:100000
Cons ci ratio: 8.191054e-02	ci left: 2.147210e-02	ci right 2.331575e-02	k: 2238	n:100000
KS ci ratio: 3.957669e-02	ci left: 8.756915e-02	ci right 9.111471e-02	k: 8933	n:100000
GPR34   100000 perm   20 sec   (4944 perm/sec)   p_kst 8.933000e-02   p_cons 2.238000e-02   p_joint 1.332000e-02

Joint ci ratio: 9.450556e-02	ci left: 1.467169e-02	ci right 1.613584e-02	k: 1693	n:110000
Cons ci ratio: 7.785488e-02	ci left: 2.164950e-02	ci right 2.341216e-02	k: 2477	n:110000
KS ci ratio: 3.771468e-02	ci left: 8.773822e-02	ci right 9.111983e-02	k: 9836	n:110000
GPR34   110000 perm   23 sec   (4852 perm/sec)   p_kst 8.941818e-02   p_cons 2.251818e-02   p_joint 1.539091e-02

Outputting figure to mutsig2_images.part000000000074/GPR34.3_1150_110000_0.089418_0.022518_0.015391.png
                gene_name: GPR34
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 64 percent done.
GPR45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.303421e-02	ci left: 8.944660e-01	ci right 9.062996e-01	k: 9005	n:10000
KS ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
GPR45   10000 perm   1 sec   (7266 perm/sec)   p_kst 6.660000e-01   p_cons 9.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR45.3_1123_10000_0.666_0.9005_1.png
                gene_name: GPR45
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
GPR78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.283710e-02	ci left: 8.972367e-01	ci right 9.089273e-01	k: 9032	n:10000
KS ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
GPR78   10000 perm   1 sec   (7084 perm/sec)   p_kst 8.254000e-01   p_cons 9.032000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR78.3_1104_10000_0.8254_0.9032_1.png
                gene_name: GPR78
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
GPR97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
Cons ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
GPR97   10000 perm   1 sec   (6943 perm/sec)   p_kst 2.159000e-01   p_cons 8.511000e-01   p_joint 4.293000e-01

Outputting figure to mutsig2_images.part000000000074/GPR97.3_1698_10000_0.2159_0.8511_0.4293.png
                gene_name: GPR97
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 69 percent done.
GPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
KS ci ratio: 1.752183e-02	ci left: 8.260517e-01	ci right 8.407535e-01	k: 8335	n:10000
GPT2   10000 perm   1 sec   (7049 perm/sec)   p_kst 8.335000e-01   p_cons 3.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPT2.3_1616_10000_0.8335_0.3741_1.png
                gene_name: GPT2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GPX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
KS ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
GPX6   10000 perm   1 sec   (7356 perm/sec)   p_kst 7.803000e-01   p_cons 9.734000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPX6.3_686_10000_0.7803_0.9734_1.png
                gene_name: GPX6
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
GPX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
GPX7   10000 perm   1 sec   (7635 perm/sec)   p_kst 1.079000e-01   p_cons 2.892000e-01   p_joint 4.384000e-01

Joint ci ratio: 6.428929e-02	ci left: 1.516872e-01	ci right 1.618128e-01	k: 3134	n:20000
Cons ci ratio: 4.197063e-02	ci left: 2.972811e-01	ci right 3.100761e-01	k: 6073	n:20000
KS ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
GPX7   20000 perm   3 sec   (6679 perm/sec)   p_kst 1.049500e-01   p_cons 3.036500e-01   p_joint 1.567000e-01

Outputting figure to mutsig2_images.part000000000074/GPX7.3_576_20000_0.10495_0.30365_0.1567.png
                gene_name: GPX7
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 73 percent done.
GRAMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
KS ci ratio: 1.533594e-02	ci left: 8.604938e-01	ci right 8.738915e-01	k: 8673	n:10000
GRAMD4   10000 perm   1 sec   (6914 perm/sec)   p_kst 8.673000e-01   p_cons 3.585000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD4.3_1809_10000_0.8673_0.3585_0.6978.png
                gene_name: GRAMD4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 75 percent done.
GRB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
Cons ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
GRB7   10000 perm   1 sec   (6775 perm/sec)   p_kst 4.300000e-03   p_cons 2.564000e-01   p_joint 4.440000e-02

Joint ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
Cons ci ratio: 4.774225e-02	ci left: 2.460439e-01	ci right 2.581282e-01	k: 5041	n:20000
KS ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
GRB7   20000 perm   3 sec   (6039 perm/sec)   p_kst 3.750000e-03   p_cons 2.520500e-01   p_joint 1.350000e-02

Joint ci ratio: 2.388263e-01	ci left: 7.836974e-03	ci right 9.993079e-03	k: 266	n:30000
Cons ci ratio: 3.817484e-02	ci left: 2.550764e-01	ci right 2.650368e-01	k: 7801	n:30000
KS ci ratio: 3.527233e-01	ci left: 3.378230e-03	ci right 4.853689e-03	k: 122	n:30000
GRB7   30000 perm   5 sec   (5720 perm/sec)   p_kst 4.066667e-03   p_cons 2.600333e-01   p_joint 8.866667e-03

Joint ci ratio: 1.517883e-01	ci left: 1.515398e-02	ci right 1.766693e-02	k: 655	n:40000
Cons ci ratio: 3.283996e-02	ci left: 2.583173e-01	ci right 2.669671e-01	k: 10505	n:40000
KS ci ratio: 2.956716e-01	ci left: 3.728767e-03	ci right 5.044783e-03	k: 174	n:40000
GRB7   40000 perm   7 sec   (5543 perm/sec)   p_kst 4.350000e-03   p_cons 2.626250e-01   p_joint 1.637500e-02

Joint ci ratio: 1.243743e-01	ci left: 1.826717e-02	ci right 2.070906e-02	k: 973	n:50000
Cons ci ratio: 3.027367e-02	ci left: 2.473035e-01	ci right 2.549254e-01	k: 12555	n:50000
KS ci ratio: 2.513741e-01	ci left: 4.231828e-03	ci right 5.466739e-03	k: 241	n:50000
GRB7   50000 perm   9 sec   (5402 perm/sec)   p_kst 4.820000e-03   p_cons 2.511000e-01   p_joint 1.946000e-02

Joint ci ratio: 1.259678e-01	ci left: 1.488193e-02	ci right 1.689862e-02	k: 952	n:60000
Cons ci ratio: 2.771974e-02	ci left: 2.465059e-01	ci right 2.534516e-01	k: 14998	n:60000
KS ci ratio: 2.224242e-01	ci left: 4.577230e-03	ci right 5.738094e-03	k: 308	n:60000
GRB7   60000 perm   11 sec   (5273 perm/sec)   p_kst 5.133333e-03   p_cons 2.499667e-01   p_joint 1.586667e-02

Joint ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
Cons ci ratio: 2.565552e-02	ci left: 2.468809e-01	ci right 2.533113e-01	k: 17506	n:70000
KS ci ratio: 2.049275e-01	ci left: 4.667090e-03	ci right 5.745979e-03	k: 363	n:70000
GRB7   70000 perm   14 sec   (5156 perm/sec)   p_kst 5.185714e-03   p_cons 2.500857e-01   p_joint 1.145714e-02

Joint ci ratio: 1.421780e-01	ci left: 8.742911e-03	ci right 1.009302e-02	k: 752	n:80000
Cons ci ratio: 2.402657e-02	ci left: 2.466537e-01	ci right 2.526645e-01	k: 19972	n:80000
KS ci ratio: 1.928608e-01	ci left: 4.641961e-03	ci right 5.644442e-03	k: 410	n:80000
GRB7   80000 perm   16 sec   (5048 perm/sec)   p_kst 5.125000e-03   p_cons 2.496500e-01   p_joint 9.400000e-03

Joint ci ratio: 1.287171e-01	ci left: 9.543063e-03	ci right 1.086657e-02	k: 917	n:90000
Cons ci ratio: 2.265424e-02	ci left: 2.467972e-01	ci right 2.524634e-01	k: 22466	n:90000
KS ci ratio: 1.819052e-01	ci left: 4.666295e-03	ci right 5.610478e-03	k: 461	n:90000
GRB7   90000 perm   18 sec   (4950 perm/sec)   p_kst 5.122222e-03   p_cons 2.496222e-01   p_joint 1.018889e-02

Joint ci ratio: 1.234641e-01	ci left: 9.363473e-03	ci right 1.060520e-02	k: 997	n:100000
Cons ci ratio: 2.152752e-02	ci left: 2.463221e-01	ci right 2.516925e-01	k: 24900	n:100000
KS ci ratio: 1.741692e-01	ci left: 4.600940e-03	ci right 5.488142e-03	k: 503	n:100000
GRB7   100000 perm   21 sec   (4862 perm/sec)   p_kst 5.030000e-03   p_cons 2.490000e-01   p_joint 9.970000e-03

Joint ci ratio: 1.031314e-01	ci left: 1.229463e-02	ci right 1.364033e-02	k: 1425	n:110000
Cons ci ratio: 2.051178e-02	ci left: 2.467003e-01	ci right 2.518220e-01	k: 27418	n:110000
KS ci ratio: 1.644908e-01	ci left: 4.713754e-03	ci right 5.567203e-03	k: 564	n:110000
GRB7   110000 perm   23 sec   (4775 perm/sec)   p_kst 5.127273e-03   p_cons 2.492545e-01   p_joint 1.295455e-02

Joint ci ratio: 1.048371e-01	ci left: 1.091253e-02	ci right 1.212791e-02	k: 1381	n:120000
Cons ci ratio: 1.965325e-02	ci left: 2.465303e-01	ci right 2.514318e-01	k: 29877	n:120000
KS ci ratio: 1.585731e-01	ci left: 4.664782e-03	ci right 5.476086e-03	k: 607	n:120000
GRB7   120000 perm   26 sec   (4688 perm/sec)   p_kst 5.058333e-03   p_cons 2.489750e-01   p_joint 1.150833e-02

Joint ci ratio: 1.034928e-01	ci left: 1.035015e-02	ci right 1.148721e-02	k: 1418	n:130000
Cons ci ratio: 1.886045e-02	ci left: 2.470575e-01	ci right 2.517691e-01	k: 32423	n:130000
KS ci ratio: 1.534883e-01	ci left: 4.609014e-03	ci right 5.382550e-03	k: 648	n:130000
GRB7   130000 perm   28 sec   (4605 perm/sec)   p_kst 4.984615e-03   p_cons 2.494077e-01   p_joint 1.090769e-02

Joint ci ratio: 1.003660e-01	ci left: 1.023729e-02	ci right 1.132597e-02	k: 1508	n:140000
Cons ci ratio: 1.767793e-02	ci left: 2.576254e-01	ci right 2.622274e-01	k: 36389	n:140000
KS ci ratio: 1.482169e-01	ci left: 4.602842e-03	ci right 5.346460e-03	k: 695	n:140000
GRB7   140000 perm   31 sec   (4528 perm/sec)   p_kst 4.964286e-03   p_cons 2.599214e-01   p_joint 1.077143e-02

Joint ci ratio: 7.782285e-02	ci left: 1.598560e-02	ci right 1.728651e-02	k: 2494	n:150000
Cons ci ratio: 1.710289e-02	ci left: 2.571567e-01	ci right 2.615993e-01	k: 38906	n:150000
KS ci ratio: 1.418322e-01	ci left: 4.707193e-03	ci right 5.432141e-03	k: 759	n:150000
GRB7   150000 perm   34 sec   (4447 perm/sec)   p_kst 5.060000e-03   p_cons 2.593733e-01   p_joint 1.662667e-02

Joint ci ratio: 7.529893e-02	ci left: 1.602867e-02	ci right 1.728893e-02	k: 2664	n:160000
Cons ci ratio: 1.656379e-02	ci left: 2.571352e-01	ci right 2.614361e-01	k: 41485	n:160000
KS ci ratio: 1.371302e-01	ci left: 4.732690e-03	ci right 5.435428e-03	k: 812	n:160000
GRB7   160000 perm   37 sec   (4374 perm/sec)   p_kst 5.075000e-03   p_cons 2.592813e-01   p_joint 1.665000e-02

Joint ci ratio: 7.782117e-02	ci left: 1.413325e-02	ci right 1.528338e-02	k: 2499	n:170000
Cons ci ratio: 1.608744e-02	ci left: 2.567662e-01	ci right 2.609362e-01	k: 44004	n:170000
KS ci ratio: 1.327130e-01	ci left: 4.766912e-03	ci right 5.450132e-03	k: 867	n:170000
GRB7   170000 perm   39 sec   (4305 perm/sec)   p_kst 5.100000e-03   p_cons 2.588471e-01   p_joint 1.470000e-02

Joint ci ratio: 9.762479e-02	ci left: 8.444164e-03	ci right 9.316208e-03	k: 1597	n:180000
Cons ci ratio: 1.562525e-02	ci left: 2.570438e-01	ci right 2.610973e-01	k: 46632	n:180000
KS ci ratio: 1.294033e-01	ci left: 4.743884e-03	ci right 5.405544e-03	k: 912	n:180000
GRB7   180000 perm   42 sec   (4239 perm/sec)   p_kst 5.066667e-03   p_cons 2.590667e-01   p_joint 8.872222e-03

Joint ci ratio: 9.770949e-02	ci left: 7.989374e-03	ci right 8.815205e-03	k: 1595	n:190000
Cons ci ratio: 1.520990e-02	ci left: 2.570627e-01	ci right 2.610078e-01	k: 49216	n:190000
KS ci ratio: 1.258026e-01	ci left: 4.764252e-03	ci right 5.408885e-03	k: 965	n:190000
GRB7   190000 perm   46 sec   (4173 perm/sec)   p_kst 5.078947e-03   p_cons 2.590316e-01   p_joint 8.394737e-03

Joint ci ratio: 9.549374e-02	ci left: 7.955838e-03	ci right 8.758510e-03	k: 1670	n:200000
Cons ci ratio: 1.482331e-02	ci left: 2.571509e-01	ci right 2.609961e-01	k: 51814	n:200000
KS ci ratio: 1.223660e-01	ci left: 4.792509e-03	ci right 5.421967e-03	k: 1020	n:200000
GRB7   200000 perm   49 sec   (4111 perm/sec)   p_kst 5.100000e-03   p_cons 2.590700e-01   p_joint 8.350000e-03

Joint ci ratio: 9.310010e-02	ci left: 7.981509e-03	ci right 8.765485e-03	k: 1757	n:210000
Cons ci ratio: 1.444399e-02	ci left: 2.577829e-01	ci right 2.615381e-01	k: 54528	n:210000
KS ci ratio: 1.198136e-01	ci left: 4.767468e-03	ci right 5.379650e-03	k: 1064	n:210000
GRB7   210000 perm   52 sec   (4056 perm/sec)   p_kst 5.066667e-03   p_cons 2.596571e-01   p_joint 8.366667e-03

Joint ci ratio: 9.102726e-02	ci left: 7.978417e-03	ci right 8.743712e-03	k: 1838	n:220000
Cons ci ratio: 1.411868e-02	ci left: 2.576419e-01	ci right 2.613099e-01	k: 57084	n:220000
KS ci ratio: 1.167289e-01	ci left: 4.802196e-03	ci right 5.401867e-03	k: 1121	n:220000
GRB7   220000 perm   55 sec   (3998 perm/sec)   p_kst 5.095455e-03   p_cons 2.594727e-01   p_joint 8.354545e-03

Joint ci ratio: 1.043719e-01	ci left: 5.777378e-03	ci right 6.417774e-03	k: 1401	n:230000
Cons ci ratio: 1.380986e-02	ci left: 2.576400e-01	ci right 2.612270e-01	k: 59669	n:230000
KS ci ratio: 1.142611e-01	ci left: 4.800293e-03	ci right 5.386199e-03	k: 1170	n:230000
GRB7   230000 perm   58 sec   (3943 perm/sec)   p_kst 5.086957e-03   p_cons 2.594304e-01   p_joint 6.091304e-03

Joint ci ratio: 9.396026e-02	ci left: 6.861558e-03	ci right 7.542092e-03	k: 1727	n:240000
Cons ci ratio: 1.351944e-02	ci left: 2.576681e-01	ci right 2.611794e-01	k: 62261	n:240000
KS ci ratio: 1.116220e-01	ci left: 4.827027e-03	ci right 5.401692e-03	k: 1226	n:240000
GRB7   240000 perm   62 sec   (3890 perm/sec)   p_kst 5.108333e-03   p_cons 2.594208e-01   p_joint 7.195833e-03

Joint ci ratio: 1.022557e-01	ci left: 5.545056e-03	ci right 6.146487e-03	k: 1460	n:250000
Cons ci ratio: 1.325033e-02	ci left: 2.575869e-01	ci right 2.610267e-01	k: 64826	n:250000
KS ci ratio: 1.094583e-01	ci left: 4.824526e-03	ci right 5.387041e-03	k: 1275	n:250000
GRB7   250000 perm   65 sec   (3837 perm/sec)   p_kst 5.100000e-03   p_cons 2.593040e-01   p_joint 5.840000e-03

Joint ci ratio: 1.023024e-01	ci left: 5.328006e-03	ci right 5.906175e-03	k: 1459	n:260000
Cons ci ratio: 1.299511e-02	ci left: 2.575586e-01	ci right 2.609313e-01	k: 67403	n:260000
KS ci ratio: 1.072126e-01	ci left: 4.841034e-03	ci right 5.393163e-03	k: 1329	n:260000
GRB7   260000 perm   69 sec   (3788 perm/sec)   p_kst 5.111538e-03   p_cons 2.592423e-01   p_joint 5.611538e-03

Joint ci ratio: 1.001960e-01	ci left: 5.354491e-03	ci right 5.922866e-03	k: 1521	n:270000
Cons ci ratio: 1.275790e-02	ci left: 2.574185e-01	ci right 2.607274e-01	k: 69949	n:270000
KS ci ratio: 1.049093e-01	ci left: 4.874463e-03	ci right 5.417724e-03	k: 1388	n:270000
GRB7   270000 perm   72 sec   (3737 perm/sec)   p_kst 5.140741e-03   p_cons 2.590704e-01   p_joint 5.633333e-03

Joint ci ratio: 9.809006e-02	ci left: 5.393134e-03	ci right 5.952886e-03	k: 1587	n:280000
Cons ci ratio: 1.251890e-02	ci left: 2.577273e-01	ci right 2.609776e-01	k: 72618	n:280000
KS ci ratio: 1.029990e-01	ci left: 4.881261e-03	ci right 5.414774e-03	k: 1440	n:280000
GRB7   280000 perm   76 sec   (3690 perm/sec)   p_kst 5.142857e-03   p_cons 2.593500e-01   p_joint 5.667857e-03

Joint ci ratio: 9.631674e-02	ci left: 5.405668e-03	ci right 5.956005e-03	k: 1646	n:290000
Cons ci ratio: 1.229526e-02	ci left: 2.579397e-01	ci right 2.611341e-01	k: 75265	n:290000
KS ci ratio: 1.013258e-01	ci left: 4.874229e-03	ci right 5.397804e-03	k: 1488	n:290000
GRB7   290000 perm   80 sec   (3644 perm/sec)   p_kst 5.131034e-03   p_cons 2.595345e-01   p_joint 5.675862e-03

Joint ci ratio: 9.474801e-02	ci left: 5.404432e-03	ci right 5.945185e-03	k: 1701	n:300000
Cons ci ratio: 1.209284e-02	ci left: 2.578322e-01	ci right 2.609724e-01	k: 77820	n:300000
KS ci ratio: 1.001913e-01	ci left: 4.822226e-03	ci right 5.334074e-03	k: 1522	n:300000
GRB7   300000 perm   83 sec   (3598 perm/sec)   p_kst 5.073333e-03   p_cons 2.594000e-01   p_joint 5.670000e-03

Joint ci ratio: 9.540711e-02	ci left: 5.157635e-03	ci right 5.677483e-03	k: 1678	n:310000
Cons ci ratio: 1.189770e-02	ci left: 2.578094e-01	ci right 2.608983e-01	k: 80399	n:310000
KS ci ratio: 9.877578e-02	ci left: 4.805072e-03	ci right 5.307475e-03	k: 1566	n:310000
GRB7   310000 perm   87 sec   (3553 perm/sec)   p_kst 5.051613e-03   p_cons 2.593516e-01   p_joint 5.412903e-03

Outputting figure to mutsig2_images.part000000000074/GRB7.3_1655_310000_0.0050516_0.25935_0.0054129.png
                gene_name: GRB7
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0053 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0057 

Current progress: 77 percent done.
GREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
Cons ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
KS ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
GREM2   10000 perm   1 sec   (7656 perm/sec)   p_kst 6.003000e-01   p_cons 7.020000e-02   p_joint 5.735000e-01

Joint ci ratio: 3.405835e-02	ci left: 3.916052e-01	ci right 4.052243e-01	k: 7968	n:20000
Cons ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
KS ci ratio: 2.227429e-02	ci left: 6.007926e-01	ci right 6.143761e-01	k: 12152	n:20000
GREM2   20000 perm   3 sec   (6710 perm/sec)   p_kst 6.076000e-01   p_cons 7.860000e-02   p_joint 3.984000e-01

Outputting figure to mutsig2_images.part000000000074/GREM2.3_511_20000_0.6076_0.0786_0.3984.png
                gene_name: GREM2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 78 percent done.
GPR37L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
GPR37L1   10000 perm   1 sec   (7339 perm/sec)   p_kst 8.844000e-01   p_cons 9.135000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR37L1.2_1454_10000_0.8844_0.9135_1.png
                gene_name: GPR37L1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
GPR39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
KS ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
GPR39   10000 perm   1 sec   (7636 perm/sec)   p_kst 9.666000e-01   p_cons 5.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR39.2_1370_10000_0.9666_0.599_1.png
                gene_name: GPR39
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
GPR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
GPR52   10000 perm   1 sec   (7531 perm/sec)   p_kst 2.180000e-02   p_cons 5.433000e-01   p_joint 1.303000e-01

Joint ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
Cons ci ratio: 2.555565e-02	ci left: 5.335628e-01	ci right 5.474254e-01	k: 10810	n:20000
KS ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
GPR52   20000 perm   3 sec   (6633 perm/sec)   p_kst 2.095000e-02   p_cons 5.405000e-01   p_joint 1.201000e-01

Joint ci ratio: 2.694483e-02	ci left: 4.080524e-01	ci right 4.192310e-01	k: 12409	n:30000
Cons ci ratio: 2.070884e-02	ci left: 5.386102e-01	ci right 5.499145e-01	k: 16328	n:30000
KS ci ratio: 1.529216e-01	ci left: 1.979225e-02	ci right 2.310134e-02	k: 642	n:30000
GPR52   30000 perm   5 sec   (6228 perm/sec)   p_kst 2.140000e-02   p_cons 5.442667e-01   p_joint 4.136333e-01

Joint ci ratio: 5.879126e-02	ci left: 9.707666e-02	ci right 1.029815e-01	k: 4000	n:40000
Cons ci ratio: 1.793970e-02	ci left: 5.392287e-01	ci right 5.490149e-01	k: 21765	n:40000
KS ci ratio: 1.338236e-01	ci left: 1.959304e-02	ci right 2.242710e-02	k: 839	n:40000
GPR52   40000 perm   7 sec   (6006 perm/sec)   p_kst 2.097500e-02   p_cons 5.441250e-01   p_joint 1.000000e-01

Joint ci ratio: 5.257439e-02	ci left: 9.742324e-02	ci right 1.027033e-01	k: 5002	n:50000
Cons ci ratio: 1.605897e-02	ci left: 5.393417e-01	ci right 5.480932e-01	k: 27186	n:50000
KS ci ratio: 1.199293e-01	ci left: 1.966401e-02	ci right 2.219204e-02	k: 1045	n:50000
GPR52   50000 perm   9 sec   (5833 perm/sec)   p_kst 2.090000e-02   p_cons 5.437200e-01   p_joint 1.000400e-01

Joint ci ratio: 8.907758e-02	ci left: 2.987217e-02	ci right 3.267341e-02	k: 1875	n:60000
Cons ci ratio: 1.464172e-02	ci left: 5.403379e-01	ci right 5.483244e-01	k: 32660	n:60000
KS ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
GPR52   60000 perm   11 sec   (5657 perm/sec)   p_kst 2.065000e-02   p_cons 5.443333e-01   p_joint 3.125000e-02

Joint ci ratio: 1.834420e-02	ci left: 3.911619e-01	ci right 3.984182e-01	k: 27635	n:70000
Cons ci ratio: 1.357295e-02	ci left: 5.400013e-01	ci right 5.473951e-01	k: 38059	n:70000
KS ci ratio: 1.018359e-01	ci left: 1.967196e-02	ci right 2.179660e-02	k: 1450	n:70000
GPR52   70000 perm   13 sec   (5522 perm/sec)   p_kst 2.071429e-02   p_cons 5.437000e-01   p_joint 3.947857e-01

Joint ci ratio: 1.713477e-02	ci left: 3.920844e-01	ci right 3.988732e-01	k: 31638	n:80000
Cons ci ratio: 1.266442e-02	ci left: 5.414914e-01	ci right 5.484053e-01	k: 43596	n:80000
KS ci ratio: 9.477227e-02	ci left: 1.994431e-02	ci right 2.194065e-02	k: 1674	n:80000
GPR52   80000 perm   15 sec   (5408 perm/sec)   p_kst 2.092500e-02   p_cons 5.449500e-01   p_joint 3.954750e-01

Outputting figure to mutsig2_images.part000000000074/GPR52.2_1090_80000_0.020925_0.54495_0.39548.png
                gene_name: GPR52
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 83 percent done.
GPR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
KS ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
GPR6   10000 perm   1 sec   (7833 perm/sec)   p_kst 9.380000e-01   p_cons 1.147000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
KS ci ratio: 7.119281e-03	ci left: 9.347224e-01	ci right 9.414495e-01	k: 18763	n:20000
GPR6   20000 perm   3 sec   (6831 perm/sec)   p_kst 9.381500e-01   p_cons 1.105500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR6.2_1093_20000_0.93815_0.11055_1.png
                gene_name: GPR6
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
GPR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
GPR75   10000 perm   1 sec   (7283 perm/sec)   p_kst 6.608000e-01   p_cons 2.423000e-01   p_joint 9.008000e-01

Outputting figure to mutsig2_images.part000000000074/GPR75.2_1627_10000_0.6608_0.2423_0.9008.png
                gene_name: GPR75
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 86 percent done.
GPR87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
GPR87   10000 perm   1 sec   (7518 perm/sec)   p_kst 9.162000e-01   p_cons 3.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR87.2_1085_10000_0.9162_0.3993_1.png
                gene_name: GPR87
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
Cons ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
KS ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
GPS1   10000 perm   1 sec   (7379 perm/sec)   p_kst 6.646000e-01   p_cons 2.150000e-02   p_joint 5.810000e-02

Joint ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
Cons ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
KS ci ratio: 2.000711e-02	ci left: 6.508255e-01	ci right 6.640287e-01	k: 13149	n:20000
GPS1   20000 perm   3 sec   (6468 perm/sec)   p_kst 6.574500e-01   p_cons 2.090000e-02   p_joint 3.145000e-02

Joint ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
Cons ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
KS ci ratio: 1.640067e-02	ci left: 6.502584e-01	ci right 6.610448e-01	k: 19670	n:30000
GPS1   30000 perm   5 sec   (6146 perm/sec)   p_kst 6.556667e-01   p_cons 2.010000e-02   p_joint 3.050000e-02

Joint ci ratio: 1.077553e-01	ci left: 3.029677e-02	ci right 3.377160e-02	k: 1280	n:40000
Cons ci ratio: 1.370237e-01	ci left: 1.867461e-02	ci right 2.144568e-02	k: 801	n:40000
KS ci ratio: 1.423549e-02	ci left: 6.499668e-01	ci right 6.593108e-01	k: 26186	n:40000
GPS1   40000 perm   7 sec   (5943 perm/sec)   p_kst 6.546500e-01   p_cons 2.002500e-02   p_joint 3.200000e-02

Joint ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
Cons ci ratio: 1.211776e-01	ci left: 1.925643e-02	ci right 2.175967e-02	k: 1024	n:50000
KS ci ratio: 1.268454e-02	ci left: 6.521782e-01	ci right 6.605236e-01	k: 32818	n:50000
GPS1   50000 perm   9 sec   (5787 perm/sec)   p_kst 6.563600e-01   p_cons 2.048000e-02   p_joint 3.038000e-02

Joint ci ratio: 9.817534e-02	ci left: 2.461117e-02	ci right 2.716831e-02	k: 1552	n:60000
Cons ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
KS ci ratio: 1.157836e-02	ci left: 6.525842e-01	ci right 6.602007e-01	k: 39384	n:60000
GPS1   60000 perm   11 sec   (5650 perm/sec)   p_kst 6.564000e-01   p_cons 2.021667e-02   p_joint 2.586667e-02

Joint ci ratio: 8.901499e-02	ci left: 2.575588e-02	ci right 2.816926e-02	k: 1886	n:70000
Cons ci ratio: 1.042075e-01	ci left: 1.878078e-02	ci right 2.085930e-02	k: 1386	n:70000
KS ci ratio: 1.075108e-02	ci left: 6.515366e-01	ci right 6.585934e-01	k: 45855	n:70000
GPS1   70000 perm   13 sec   (5518 perm/sec)   p_kst 6.550714e-01   p_cons 1.980000e-02   p_joint 2.694286e-02

Joint ci ratio: 8.363681e-02	ci left: 2.560611e-02	ci right 2.785339e-02	k: 2137	n:80000
Cons ci ratio: 9.716951e-02	ci left: 1.896784e-02	ci right 2.091719e-02	k: 1594	n:80000
KS ci ratio: 1.004831e-02	ci left: 6.521451e-01	ci right 6.587436e-01	k: 52436	n:80000
GPS1   80000 perm   15 sec   (5405 perm/sec)   p_kst 6.554500e-01   p_cons 1.992500e-02   p_joint 2.671250e-02

Outputting figure to mutsig2_images.part000000000074/GPS1.2_1685_80000_0.65545_0.019925_0.026713.png
                gene_name: GPS1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 89 percent done.
GPSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
Cons ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
GPSM1   10000 perm   1 sec   (6813 perm/sec)   p_kst 8.280000e-02   p_cons 6.543000e-01   p_joint 6.145000e-01

Joint ci ratio: 1.792768e-02	ci left: 6.986755e-01	ci right 7.113648e-01	k: 14101	n:20000
Cons ci ratio: 1.956914e-02	ci left: 6.607712e-01	ci right 6.738801e-01	k: 13347	n:20000
KS ci ratio: 9.135347e-02	ci left: 8.043612e-02	ci right 8.818524e-02	k: 1685	n:20000
GPSM1   20000 perm   3 sec   (6034 perm/sec)   p_kst 8.425000e-02   p_cons 6.673500e-01   p_joint 7.050500e-01

Outputting figure to mutsig2_images.part000000000074/GPSM1.2_2251_20000_0.08425_0.66735_0.70505.png
                gene_name: GPSM1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 91 percent done.
GPSM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
Cons ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
KS ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
GPSM2   10000 perm   1 sec   (6931 perm/sec)   p_kst 4.354000e-01   p_cons 6.964000e-01   p_joint 8.045000e-01

Outputting figure to mutsig2_images.part000000000074/GPSM2.2_2111_10000_0.4354_0.6964_0.8045.png
                gene_name: GPSM2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 92 percent done.
GPX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
Cons ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
KS ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
GPX8   10000 perm   1 sec   (7882 perm/sec)   p_kst 7.080000e-02   p_cons 5.302000e-01   p_joint 9.100000e-02

Joint ci ratio: 7.061667e-02	ci left: 1.287656e-01	ci right 1.382412e-01	k: 2669	n:20000
Cons ci ratio: 2.583732e-02	ci left: 5.281079e-01	ci right 5.419820e-01	k: 10701	n:20000
KS ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
GPX8   20000 perm   3 sec   (6864 perm/sec)   p_kst 7.245000e-02   p_cons 5.350500e-01   p_joint 1.334500e-01

Outputting figure to mutsig2_images.part000000000074/GPX8.2_642_20000_0.07245_0.53505_0.13345.png
                gene_name: GPX8
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 94 percent done.
GRAMD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
Cons ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
GRAMD1A   10000 perm   1 sec   (6786 perm/sec)   p_kst 2.161000e-01   p_cons 3.208000e-01   p_joint 2.256000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD1A.2_2255_10000_0.2161_0.3208_0.2256.png
                gene_name: GRAMD1A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 95 percent done.
GRB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
Cons ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
GRB14   10000 perm   1 sec   (7086 perm/sec)   p_kst 3.295000e-01   p_cons 1.068000e-01   p_joint 6.202000e-01

Joint ci ratio: 2.913863e-02	ci left: 4.680582e-01	ci right 4.819491e-01	k: 9500	n:20000
Cons ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
KS ci ratio: 3.883970e-02	ci left: 3.308462e-01	ci right 3.440011e-01	k: 6748	n:20000
GRB14   20000 perm   3 sec   (6232 perm/sec)   p_kst 3.374000e-01   p_cons 1.070000e-01   p_joint 4.750000e-01

Outputting figure to mutsig2_images.part000000000074/GRB14.2_1679_20000_0.3374_0.107_0.475.png
                gene_name: GRB14
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 97 percent done.
GRHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
Cons ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
KS ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
GRHL2   10000 perm   1 sec   (7014 perm/sec)   p_kst 5.170000e-01   p_cons 7.719000e-01   p_joint 8.033000e-01

Outputting figure to mutsig2_images.part000000000074/GRHL2.2_1942_10000_0.517_0.7719_0.8033.png
                gene_name: GRHL2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 98 percent done.
GRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
GRIN1   10000 perm   2 sec   (6509 perm/sec)   p_kst 2.583000e-01   p_cons 7.644000e-01   p_joint 9.348000e-01

Outputting figure to mutsig2_images.part000000000074/GRIN1.2_3037_10000_0.2583_0.7644_0.9348.png
                gene_name: GRIN1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000074
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 74 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422002: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000075> was used as the working directory.
Started at Wed Oct 24 17:50:01 2012
Results reported at Wed Oct 24 21:08:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000075.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000075.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 75  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000075.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11622.17 sec.
    Max Memory :      5362 MB
    Max Swap   :      7784 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
75
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 75
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 75: processing genes 6696 - 6785
Calculating significance of each gene.
Using projection method.
6696	GRIN2B	1
6697	GRIN2C	8.626848e-01
6698	GRIN2D	2.652866e-01
6699	GRIN3A	8.543247e-01
6700	GRIN3B	1
6701	GRINA	7.232934e-01
6702	GRINL1A	4.729114e-01
6703	GRIP1	8.647939e-01
6704	GRIP2	9.745476e-01
6705	GRIPAP1	8.498050e-01
6706	GRK1	8.212149e-01
6707	GRK4	1.667256e-01
6708	GRK5	1.252639e-01
6709	GRK6	1
6710	GRK7	6.820260e-01
6711	GRLF1	3.156407e-01
6712	GRM1	1.294084e-01
6713	GRM2	8.445277e-01
6714	GRM3	8.434233e-01
6715	GRM4	4.581568e-01
6716	GRM5	1.692209e-01
6717	GRM6	3.374578e-01
6718	GRM7	1
6719	GRM8	3.517577e-01
6720	GRN	1
6721	GRP	2.829969e-01
6722	GRPEL1	7.075625e-01
6723	GRPEL2	1
6724	GRPR	1.498695e-01
6725	GRSF1	7.465988e-02
6726	GRTP1	9.314772e-01
6727	GRWD1	8.348664e-01
6728	GRXCR1	8.904976e-02
6729	GRXCR2	1
6730	GSDMA	7.926305e-01
6731	GSDMB	4.989040e-01
6732	GSDMC	4.511760e-01
6733	GSDMD	4.556943e-01
6734	GSG1	1
6735	GSG1L	2.952970e-02
6736	GSG2	8.796505e-01
6737	GSK3A	1
6738	GSK3B	1
6739	GSN	8.509195e-01
6740	GSPT1	7.660470e-01
6741	GSPT2	5.436385e-01
6742	GSR	9.473625e-01
6743	GSS	9.070400e-01
6744	GSTA1	5.097401e-01
6745	GSTA2	1.615172e-01
6746	GSTA3	2.001420e-01
6747	GSTA4	6.477060e-01
6748	GSTA5	9.344923e-02
6749	GSTCD	7.910437e-01
6750	GSTK1	5.516416e-01
6751	GSTM1	6.484636e-01
6752	GSTM2	4.029818e-01
6753	GSTM3	3.958054e-01
6754	GSTM4	8.070742e-01
6755	GSTM5	3.565623e-01
6756	GSTO1	1
6757	GSTO2	5.702544e-01
6758	GSTP1	2.121563e-01
6759	GSTZ1	6.312633e-01
6760	GSX1	1
6761	GSX2	6.836524e-01
6762	GTDC1	8.025653e-03
6763	GTF2A1	6.131244e-01
6764	GTF2A1L	1
6765	GTF2A2	3.003025e-01
6766	GTF2B	8.696789e-01
6767	GTF2E1	1.501256e-01
6768	GTF2E2	2.979486e-01
6769	GTF2F1	9.249922e-01
6770	GTF2F2	1
6771	GTF2H1	3.921491e-01
6772	GTF2H2C	5.404216e-01
6773	GTF2H2D	1
6774	GTF2H3	8.105609e-01
6775	GTF2H4	1
6776	GTF2H5	1
In gene GTF2I the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 1981    n = 1	mu =   2.01e-07
6777	GTF2I	5.228815e-01
6778	GTF2IRD1	9.382792e-01
6779	GTF2IRD2	1
6780	GTF2IRD2B	1
6781	GTF3A	1
6782	GTF3C1	9.995820e-01
6783	GTF3C2	9.872573e-01
6784	GTF3C3	8.998770e-01
6785	GTF3C4	1
Done

Running MutSig 2:
Scatter job 75: processing genes 6696 - 6785
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
GRM1   10000 perm   2 sec   (4709 perm/sec)   p_kst 4.818000e-01   p_cons 4.000000e-03   p_joint 2.920000e-02

Joint ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
Cons ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
KS ci ratio: 2.862373e-02	ci left: 4.769518e-01	ci right 4.908528e-01	k: 9678	n:20000
GRM1   20000 perm   7 sec   (3068 perm/sec)   p_kst 4.839000e-01   p_cons 3.750000e-03   p_joint 1.655000e-02

Joint ci ratio: 1.651492e-01	ci left: 1.690934e-02	ci right 1.998493e-02	k: 552	n:30000
Cons ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
KS ci ratio: 2.329083e-02	ci left: 4.799627e-01	ci right 4.913068e-01	k: 14569	n:30000
GRM1   30000 perm   9 sec   (3305 perm/sec)   p_kst 4.856333e-01   p_cons 3.900000e-03   p_joint 1.840000e-02

Joint ci ratio: 2.123145e-01	ci left: 7.552622e-03	ci right 9.369820e-03	k: 337	n:40000
Cons ci ratio: 3.766879e-01	ci left: 2.192729e-03	ci right 3.231562e-03	k: 107	n:40000
KS ci ratio: 2.020439e-02	ci left: 4.798911e-01	ci right 4.897111e-01	k: 19392	n:40000
GRM1   40000 perm   12 sec   (3423 perm/sec)   p_kst 4.848000e-01   p_cons 2.675000e-03   p_joint 8.425000e-03

Joint ci ratio: 1.549391e-01	ci left: 1.165993e-02	ci right 1.363725e-02	k: 631	n:50000
Cons ci ratio: 3.369208e-01	ci left: 2.245931e-03	ci right 3.173307e-03	k: 134	n:50000
KS ci ratio: 1.810916e-02	ci left: 4.793707e-01	ci right 4.881511e-01	k: 24188	n:50000
GRM1   50000 perm   14 sec   (3480 perm/sec)   p_kst 4.837600e-01   p_cons 2.680000e-03   p_joint 1.262000e-02

Joint ci ratio: 1.529187e-01	ci left: 1.000439e-02	ci right 1.167676e-02	k: 649	n:60000
Cons ci ratio: 3.029138e-01	ci left: 2.362254e-03	ci right 3.220297e-03	k: 166	n:60000
KS ci ratio: 1.652457e-02	ci left: 4.799605e-01	ci right 4.879744e-01	k: 29038	n:60000
GRM1   60000 perm   17 sec   (3511 perm/sec)   p_kst 4.839667e-01   p_cons 2.766667e-03   p_joint 1.081667e-02

Joint ci ratio: 1.371059e-01	ci left: 1.075092e-02	ci right 1.234710e-02	k: 807	n:70000
Cons ci ratio: 2.803238e-01	ci left: 2.395577e-03	ci right 3.189388e-03	k: 194	n:70000
KS ci ratio: 1.537547e-02	ci left: 4.777637e-01	ci right 4.851807e-01	k: 33703	n:70000
GRM1   70000 perm   20 sec   (3522 perm/sec)   p_kst 4.814714e-01   p_cons 2.771429e-03   p_joint 1.152857e-02

Joint ci ratio: 1.254251e-01	ci left: 1.130541e-02	ci right 1.283028e-02	k: 964	n:80000
Cons ci ratio: 2.537160e-01	ci left: 2.597768e-03	ci right 3.363980e-03	k: 237	n:80000
KS ci ratio: 1.441662e-02	ci left: 4.768200e-01	ci right 4.837565e-01	k: 38423	n:80000
GRM1   80000 perm   23 sec   (3521 perm/sec)   p_kst 4.802875e-01   p_cons 2.962500e-03   p_joint 1.205000e-02

Joint ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
Cons ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
KS ci ratio: 1.359090e-02	ci left: 4.770644e-01	ci right 4.836036e-01	k: 43230	n:90000
GRM1   90000 perm   26 sec   (3512 perm/sec)   p_kst 4.803333e-01   p_cons 2.922222e-03   p_joint 1.120000e-02

Joint ci ratio: 1.183587e-01	ci left: 1.020742e-02	ci right 1.150118e-02	k: 1084	n:100000
Cons ci ratio: 2.298552e-01	ci left: 2.566779e-03	ci right 3.242565e-03	k: 289	n:100000
KS ci ratio: 1.291114e-02	ci left: 4.765492e-01	ci right 4.827520e-01	k: 47965	n:100000
GRM1   100000 perm   29 sec   (3496 perm/sec)   p_kst 4.796500e-01   p_cons 2.890000e-03   p_joint 1.084000e-02

Joint ci ratio: 1.187498e-01	ci left: 9.226269e-03	ci right 1.039979e-02	k: 1078	n:110000
Cons ci ratio: 2.201993e-01	ci left: 2.556479e-03	ci right 3.197450e-03	k: 315	n:110000
KS ci ratio: 1.231065e-02	ci left: 4.766801e-01	ci right 4.825937e-01	k: 52760	n:110000
GRM1   110000 perm   32 sec   (3476 perm/sec)   p_kst 4.796364e-01   p_cons 2.863636e-03   p_joint 9.800000e-03

Joint ci ratio: 1.060072e-01	ci left: 1.066905e-02	ci right 1.187141e-02	k: 1351	n:120000
Cons ci ratio: 2.126034e-01	ci left: 2.524715e-03	ci right 3.133040e-03	k: 338	n:120000
KS ci ratio: 1.177857e-02	ci left: 4.771447e-01	ci right 4.828063e-01	k: 57597	n:120000
GRM1   120000 perm   35 sec   (3451 perm/sec)   p_kst 4.799750e-01   p_cons 2.816667e-03   p_joint 1.125833e-02

Joint ci ratio: 9.871487e-02	ci left: 1.139265e-02	ci right 1.258312e-02	k: 1557	n:130000
Cons ci ratio: 2.032249e-01	ci left: 2.563855e-03	ci right 3.150977e-03	k: 370	n:130000
KS ci ratio: 1.132587e-02	ci left: 4.768425e-01	ci right 4.822815e-01	k: 62343	n:130000
GRM1   130000 perm   38 sec   (3421 perm/sec)   p_kst 4.795615e-01   p_cons 2.846154e-03   p_joint 1.197692e-02

Joint ci ratio: 9.628796e-02	ci left: 1.113631e-02	ci right 1.226976e-02	k: 1637	n:140000
Cons ci ratio: 1.977118e-01	ci left: 2.523188e-03	ci right 3.083434e-03	k: 391	n:140000
KS ci ratio: 1.090353e-02	ci left: 4.774156e-01	ci right 4.826567e-01	k: 67205	n:140000
GRM1   140000 perm   41 sec   (3394 perm/sec)   p_kst 4.800357e-01   p_cons 2.792857e-03   p_joint 1.169286e-02

Joint ci ratio: 9.695631e-02	ci left: 1.025705e-02	ci right 1.130866e-02	k: 1616	n:150000
Cons ci ratio: 1.910078e-01	ci left: 2.532562e-03	ci right 3.073608e-03	k: 419	n:150000
KS ci ratio: 1.052599e-02	ci left: 4.778754e-01	ci right 4.829387e-01	k: 72061	n:150000
GRM1   150000 perm   45 sec   (3363 perm/sec)   p_kst 4.804067e-01   p_cons 2.793333e-03   p_joint 1.077333e-02

Joint ci ratio: 9.609285e-02	ci left: 9.798842e-03	ci right 1.079402e-02	k: 1646	n:160000
Cons ci ratio: 1.849426e-01	ci left: 2.541044e-03	ci right 3.064731e-03	k: 447	n:160000
KS ci ratio: 1.019342e-02	ci left: 4.778742e-01	ci right 4.827765e-01	k: 76852	n:160000
GRM1   160000 perm   48 sec   (3335 perm/sec)   p_kst 4.803250e-01   p_cons 2.793750e-03   p_joint 1.028750e-02

Joint ci ratio: 9.504998e-02	ci left: 9.434800e-03	ci right 1.038203e-02	k: 1683	n:170000
Cons ci ratio: 1.792320e-01	ci left: 2.554386e-03	ci right 3.062805e-03	k: 476	n:170000
KS ci ratio: 9.901119e-03	ci left: 4.773402e-01	ci right 4.820958e-01	k: 81552	n:170000
GRM1   170000 perm   51 sec   (3303 perm/sec)   p_kst 4.797176e-01   p_cons 2.800000e-03   p_joint 9.900000e-03

Joint ci ratio: 9.448351e-02	ci left: 9.024455e-03	ci right 9.924782e-03	k: 1704	n:180000
Cons ci ratio: 1.740197e-01	ci left: 2.566467e-03	ci right 3.060873e-03	k: 505	n:180000
KS ci ratio: 9.625502e-03	ci left: 4.772341e-01	ci right 4.818554e-01	k: 86318	n:180000
GRM1   180000 perm   55 sec   (3273 perm/sec)   p_kst 4.795444e-01   p_cons 2.805556e-03   p_joint 9.466667e-03

Joint ci ratio: 9.250266e-02	ci left: 8.929831e-03	ci right 9.801027e-03	k: 1778	n:190000
Cons ci ratio: 1.689208e-01	ci left: 2.587549e-03	ci right 3.069924e-03	k: 536	n:190000
KS ci ratio: 9.362405e-03	ci left: 4.776355e-01	ci right 4.821335e-01	k: 91178	n:190000
GRM1   190000 perm   59 sec   (3241 perm/sec)   p_kst 4.798842e-01   p_cons 2.821053e-03   p_joint 9.357895e-03

Joint ci ratio: 9.292059e-02	ci left: 8.409973e-03	ci right 9.234358e-03	k: 1763	n:200000
Cons ci ratio: 1.643906e-01	ci left: 2.601917e-03	ci right 3.072676e-03	k: 566	n:200000
KS ci ratio: 9.119303e-03	ci left: 4.780232e-01	ci right 4.824074e-01	k: 96043	n:200000
GRM1   200000 perm   62 sec   (3208 perm/sec)   p_kst 4.802150e-01   p_cons 2.830000e-03   p_joint 8.815000e-03

Joint ci ratio: 8.738980e-02	ci left: 9.075539e-03	ci right 9.909513e-03	k: 1992	n:210000
Cons ci ratio: 1.607473e-01	ci left: 2.596788e-03	ci right 3.055201e-03	k: 592	n:210000
KS ci ratio: 8.893180e-03	ci left: 4.784324e-01	ci right 4.827109e-01	k: 100920	n:210000
GRM1   210000 perm   66 sec   (3175 perm/sec)   p_kst 4.805714e-01   p_cons 2.819048e-03   p_joint 9.485714e-03

Joint ci ratio: 8.494838e-02	ci left: 9.178946e-03	ci right 9.997689e-03	k: 2108	n:220000
Cons ci ratio: 1.574635e-01	ci left: 2.587864e-03	ci right 3.034487e-03	k: 617	n:220000
KS ci ratio: 8.689167e-03	ci left: 4.784557e-01	ci right 4.826357e-01	k: 105720	n:220000
GRM1   220000 perm   70 sec   (3147 perm/sec)   p_kst 4.805455e-01   p_cons 2.804545e-03   p_joint 9.581818e-03

Joint ci ratio: 8.330776e-02	ci left: 9.137387e-03	ci right 9.935916e-03	k: 2192	n:230000
Cons ci ratio: 1.536559e-01	ci left: 2.604886e-03	ci right 3.042575e-03	k: 648	n:230000
KS ci ratio: 8.502725e-03	ci left: 4.782345e-01	ci right 4.823225e-01	k: 110464	n:230000
GRM1   230000 perm   74 sec   (3114 perm/sec)   p_kst 4.802783e-01   p_cons 2.817391e-03   p_joint 9.530435e-03

Joint ci ratio: 8.083192e-02	ci left: 9.311733e-03	ci right 1.010018e-02	k: 2328	n:240000
Cons ci ratio: 1.492339e-01	ci left: 2.652697e-03	ci right 3.084448e-03	k: 687	n:240000
KS ci ratio: 8.323132e-03	ci left: 4.783118e-01	ci right 4.823136e-01	k: 115275	n:240000
GRM1   240000 perm   78 sec   (3083 perm/sec)   p_kst 4.803125e-01   p_cons 2.862500e-03   p_joint 9.700000e-03

Joint ci ratio: 7.517266e-02	ci left: 1.035533e-02	ci right 1.116807e-02	k: 2689	n:250000
Cons ci ratio: 1.454743e-01	ci left: 2.685283e-03	ci right 3.110371e-03	k: 723	n:250000
KS ci ratio: 8.157530e-03	ci left: 4.781958e-01	ci right 4.821166e-01	k: 120039	n:250000
GRM1   250000 perm   82 sec   (3053 perm/sec)   p_kst 4.801560e-01   p_cons 2.892000e-03   p_joint 1.075600e-02

Joint ci ratio: 7.368092e-02	ci left: 1.037226e-02	ci right 1.116948e-02	k: 2799	n:260000
Cons ci ratio: 1.428358e-01	ci left: 2.682104e-03	ci right 3.098331e-03	k: 750	n:260000
KS ci ratio: 7.998474e-03	ci left: 4.782741e-01	ci right 4.821187e-01	k: 124851	n:260000
GRM1   260000 perm   86 sec   (3023 perm/sec)   p_kst 4.801962e-01   p_cons 2.884615e-03   p_joint 1.076538e-02

Joint ci ratio: 7.578850e-02	ci left: 9.439115e-03	ci right 1.018628e-02	k: 2648	n:270000
Cons ci ratio: 1.400654e-01	ci left: 2.689946e-03	ci right 3.098618e-03	k: 780	n:270000
KS ci ratio: 7.850995e-03	ci left: 4.781806e-01	ci right 4.819532e-01	k: 129618	n:270000
GRM1   270000 perm   90 sec   (2995 perm/sec)   p_kst 4.800667e-01   p_cons 2.888889e-03   p_joint 9.807407e-03

Joint ci ratio: 7.068604e-02	ci left: 1.048009e-02	ci right 1.125151e-02	k: 3041	n:280000
Cons ci ratio: 1.369430e-01	ci left: 2.717996e-03	ci right 3.120974e-03	k: 816	n:280000
KS ci ratio: 7.709893e-03	ci left: 4.781908e-01	ci right 4.818954e-01	k: 134412	n:280000
GRM1   280000 perm   94 sec   (2965 perm/sec)   p_kst 4.800429e-01   p_cons 2.914286e-03   p_joint 1.086071e-02

Joint ci ratio: 7.203965e-02	ci left: 9.742645e-03	ci right 1.047409e-02	k: 2930	n:290000
Cons ci ratio: 1.333945e-01	ci left: 2.770871e-03	ci right 3.170199e-03	k: 860	n:290000
KS ci ratio: 7.575717e-03	ci left: 4.782284e-01	ci right 4.818685e-01	k: 139214	n:290000
GRM1   290000 perm   99 sec   (2937 perm/sec)   p_kst 4.800483e-01   p_cons 2.965517e-03   p_joint 1.010345e-02

Joint ci ratio: 7.163350e-02	ci left: 9.529150e-03	ci right 1.024037e-02	k: 2964	n:300000
Cons ci ratio: 1.311296e-01	ci left: 2.775200e-03	ci right 3.167832e-03	k: 890	n:300000
KS ci ratio: 7.451495e-03	ci left: 4.780508e-01	ci right 4.816296e-01	k: 143952	n:300000
GRM1   300000 perm   103 sec   (2908 perm/sec)   p_kst 4.798400e-01   p_cons 2.966667e-03   p_joint 9.880000e-03

Joint ci ratio: 6.792619e-02	ci left: 1.026784e-02	ci right 1.099297e-02	k: 3294	n:310000
Cons ci ratio: 1.294706e-01	ci left: 2.757451e-03	ci right 3.142257e-03	k: 913	n:310000
KS ci ratio: 7.329066e-03	ci left: 4.781657e-01	ci right 4.816863e-01	k: 148777	n:310000
GRM1   310000 perm   108 sec   (2880 perm/sec)   p_kst 4.799258e-01   p_cons 2.945161e-03   p_joint 1.062581e-02

Joint ci ratio: 6.600158e-02	ci left: 1.054312e-02	ci right 1.126578e-02	k: 3488	n:320000
Cons ci ratio: 1.274643e-01	ci left: 2.758993e-03	ci right 3.137597e-03	k: 942	n:320000
KS ci ratio: 7.215685e-03	ci left: 4.780520e-01	ci right 4.815171e-01	k: 153531	n:320000
GRM1   320000 perm   112 sec   (2853 perm/sec)   p_kst 4.797844e-01   p_cons 2.943750e-03   p_joint 1.090000e-02

Joint ci ratio: 6.500329e-02	ci left: 1.054554e-02	ci right 1.125703e-02	k: 3596	n:330000
Cons ci ratio: 1.254838e-01	ci left: 2.763420e-03	ci right 3.136302e-03	k: 972	n:330000
KS ci ratio: 7.106761e-03	ci left: 4.779911e-01	ci right 4.814032e-01	k: 158300	n:330000
GRM1   330000 perm   117 sec   (2826 perm/sec)   p_kst 4.796970e-01   p_cons 2.945455e-03   p_joint 1.089697e-02

Joint ci ratio: 6.299171e-02	ci left: 1.090688e-02	ci right 1.161914e-02	k: 3828	n:340000
Cons ci ratio: 1.235311e-01	ci left: 2.770481e-03	ci right 3.138072e-03	k: 1003	n:340000
KS ci ratio: 7.002130e-03	ci left: 4.779694e-01	ci right 4.813309e-01	k: 163081	n:340000
GRM1   340000 perm   121 sec   (2799 perm/sec)   p_kst 4.796500e-01   p_cons 2.950000e-03   p_joint 1.125882e-02

Joint ci ratio: 6.086040e-02	ci left: 1.135763e-02	ci right 1.207335e-02	k: 4099	n:350000
Cons ci ratio: 1.217849e-01	ci left: 2.771639e-03	ci right 3.133811e-03	k: 1032	n:350000
KS ci ratio: 6.903963e-03	ci left: 4.778065e-01	ci right 4.811195e-01	k: 167812	n:350000
GRM1   350000 perm   126 sec   (2772 perm/sec)   p_kst 4.794629e-01   p_cons 2.948571e-03   p_joint 1.171143e-02

Joint ci ratio: 5.759181e-02	ci left: 1.233949e-02	ci right 1.307394e-02	k: 4573	n:360000
Cons ci ratio: 1.202243e-01	ci left: 2.767379e-03	ci right 3.124030e-03	k: 1059	n:360000
KS ci ratio: 6.807273e-03	ci left: 4.778391e-01	ci right 4.811057e-01	k: 172610	n:360000
GRM1   360000 perm   131 sec   (2745 perm/sec)   p_kst 4.794722e-01   p_cons 2.941667e-03   p_joint 1.270278e-02

Joint ci ratio: 5.685144e-02	ci left: 1.232567e-02	ci right 1.304956e-02	k: 4693	n:370000
Cons ci ratio: 1.189970e-01	ci left: 2.750264e-03	ci right 3.100836e-03	k: 1081	n:370000
KS ci ratio: 6.715443e-03	ci left: 4.778026e-01	ci right 4.810247e-01	k: 177383	n:370000
GRM1   370000 perm   136 sec   (2720 perm/sec)   p_kst 4.794135e-01   p_cons 2.921622e-03   p_joint 1.268378e-02

Joint ci ratio: 5.606229e-02	ci left: 1.234638e-02	ci right 1.306108e-02	k: 4826	n:380000
Cons ci ratio: 1.170644e-01	ci left: 2.769830e-03	ci right 3.116766e-03	k: 1117	n:380000
KS ci ratio: 6.626952e-03	ci left: 4.777894e-01	ci right 4.809688e-01	k: 182164	n:380000
GRM1   380000 perm   141 sec   (2697 perm/sec)   p_kst 4.793789e-01   p_cons 2.939474e-03   p_joint 1.270000e-02

Joint ci ratio: 5.563553e-02	ci left: 1.221940e-02	ci right 1.292120e-02	k: 4901	n:390000
Cons ci ratio: 1.153233e-01	ci left: 2.783455e-03	ci right 3.126560e-03	k: 1151	n:390000
KS ci ratio: 6.540056e-03	ci left: 4.779156e-01	ci right 4.810540e-01	k: 186999	n:390000
GRM1   390000 perm   146 sec   (2673 perm/sec)   p_kst 4.794846e-01   p_cons 2.951282e-03   p_joint 1.256667e-02

Joint ci ratio: 5.641249e-02	ci left: 1.159090e-02	ci right 1.226620e-02	k: 4770	n:400000
Cons ci ratio: 1.138986e-01	ci left: 2.784291e-03	ci right 3.122973e-03	k: 1180	n:400000
KS ci ratio: 6.456748e-03	ci left: 4.780157e-01	ci right 4.811146e-01	k: 191826	n:400000
GRM1   400000 perm   151 sec   (2650 perm/sec)   p_kst 4.795650e-01   p_cons 2.950000e-03   p_joint 1.192500e-02

Joint ci ratio: 5.659508e-02	ci left: 1.123840e-02	ci right 1.189535e-02	k: 4741	n:410000
Cons ci ratio: 1.128064e-01	ci left: 2.770887e-03	ci right 3.104492e-03	k: 1203	n:410000
KS ci ratio: 6.377293e-03	ci left: 4.780527e-01	ci right 4.811135e-01	k: 196629	n:410000
GRM1   410000 perm   156 sec   (2627 perm/sec)   p_kst 4.795829e-01   p_cons 2.934146e-03   p_joint 1.156341e-02

Joint ci ratio: 5.754941e-02	ci left: 1.061164e-02	ci right 1.124276e-02	k: 4588	n:420000
Cons ci ratio: 1.116082e-01	ci left: 2.765080e-03	ci right 3.094218e-03	k: 1229	n:420000
KS ci ratio: 6.299469e-03	ci left: 4.781857e-01	ci right 4.812098e-01	k: 201473	n:420000
GRM1   420000 perm   161 sec   (2603 perm/sec)   p_kst 4.796976e-01   p_cons 2.926190e-03   p_joint 1.092381e-02

Joint ci ratio: 5.424776e-02	ci left: 1.167209e-02	ci right 1.232521e-02	k: 5158	n:430000
Cons ci ratio: 1.099220e-01	ci left: 2.786702e-03	ci right 3.113076e-03	k: 1267	n:430000
KS ci ratio: 6.225527e-03	ci left: 4.782244e-01	ci right 4.812131e-01	k: 206279	n:430000
GRM1   430000 perm   167 sec   (2581 perm/sec)   p_kst 4.797186e-01   p_cons 2.946512e-03   p_joint 1.199535e-02

Joint ci ratio: 5.361223e-02	ci left: 1.168259e-02	ci right 1.232840e-02	k: 5281	n:440000
Cons ci ratio: 1.085604e-01	ci left: 2.794108e-03	ci right 3.117038e-03	k: 1299	n:440000
KS ci ratio: 6.156007e-03	ci left: 4.781092e-01	ci right 4.810638e-01	k: 211018	n:440000
GRM1   440000 perm   172 sec   (2557 perm/sec)   p_kst 4.795864e-01   p_cons 2.952273e-03   p_joint 1.200227e-02

Joint ci ratio: 5.287489e-02	ci left: 1.174750e-02	ci right 1.238769e-02	k: 5429	n:450000
Cons ci ratio: 1.072481e-01	ci left: 2.801209e-03	ci right 3.120799e-03	k: 1331	n:450000
KS ci ratio: 6.086298e-03	ci left: 4.782016e-01	ci right 4.811231e-01	k: 215848	n:450000
GRM1   450000 perm   178 sec   (2534 perm/sec)   p_kst 4.796622e-01   p_cons 2.957778e-03   p_joint 1.206444e-02

Joint ci ratio: 5.334613e-02	ci left: 1.129256e-02	ci right 1.191361e-02	k: 5336	n:460000
Cons ci ratio: 1.062955e-01	ci left: 2.791093e-03	ci right 3.106523e-03	k: 1355	n:460000
KS ci ratio: 6.020189e-03	ci left: 4.781836e-01	ci right 4.810732e-01	k: 220629	n:460000
GRM1   460000 perm   183 sec   (2512 perm/sec)   p_kst 4.796283e-01   p_cons 2.945652e-03   p_joint 1.160000e-02

Joint ci ratio: 5.283452e-02	ci left: 1.127063e-02	ci right 1.188435e-02	k: 5440	n:470000
Cons ci ratio: 1.053294e-01	ci left: 2.783491e-03	ci right 3.095027e-03	k: 1380	n:470000
KS ci ratio: 5.955706e-03	ci left: 4.782070e-01	ci right 4.810656e-01	k: 225429	n:470000
GRM1   470000 perm   189 sec   (2490 perm/sec)   p_kst 4.796362e-01   p_cons 2.936170e-03   p_joint 1.157447e-02

Joint ci ratio: 5.226588e-02	ci left: 1.128048e-02	ci right 1.188793e-02	k: 5559	n:480000
Cons ci ratio: 1.043893e-01	ci left: 2.776219e-03	ci right 3.083996e-03	k: 1405	n:480000
KS ci ratio: 5.892735e-03	ci left: 4.782733e-01	ci right 4.811020e-01	k: 230250	n:480000
GRM1   480000 perm   194 sec   (2469 perm/sec)   p_kst 4.796875e-01   p_cons 2.927083e-03   p_joint 1.158125e-02

Joint ci ratio: 5.179370e-02	ci left: 1.125572e-02	ci right 1.185620e-02	k: 5661	n:490000
Cons ci ratio: 1.036921e-01	ci left: 2.757326e-03	ci right 3.060843e-03	k: 1424	n:490000
KS ci ratio: 5.833438e-03	ci left: 4.781901e-01	ci right 4.809897e-01	k: 234999	n:490000
GRM1   490000 perm   200 sec   (2448 perm/sec)   p_kst 4.795898e-01   p_cons 2.906122e-03   p_joint 1.155306e-02

Joint ci ratio: 5.059767e-02	ci left: 1.156177e-02	ci right 1.216391e-02	k: 5930	n:500000
Cons ci ratio: 1.025821e-01	ci left: 2.762581e-03	ci right 3.063225e-03	k: 1455	n:500000
KS ci ratio: 5.773349e-03	ci left: 4.783304e-01	ci right 4.811019e-01	k: 239858	n:500000
GRM1   500000 perm   206 sec   (2428 perm/sec)   p_kst 4.797160e-01   p_cons 2.910000e-03   p_joint 1.186000e-02

Joint ci ratio: 5.117855e-02	ci left: 1.108140e-02	ci right 1.166535e-02	k: 5799	n:510000
Cons ci ratio: 1.017130e-01	ci left: 2.756180e-03	ci right 3.053434e-03	k: 1480	n:510000
KS ci ratio: 5.717100e-03	ci left: 4.782888e-01	ci right 4.810330e-01	k: 244627	n:510000
GRM1   510000 perm   212 sec   (2408 perm/sec)   p_kst 4.796608e-01   p_cons 2.901961e-03   p_joint 1.137059e-02

Joint ci ratio: 4.895760e-02	ci left: 1.188059e-02	ci right 1.247871e-02	k: 6332	n:520000
Cons ci ratio: 1.005980e-01	ci left: 2.765033e-03	ci right 3.059780e-03	k: 1513	n:520000
KS ci ratio: 5.662398e-03	ci left: 4.782548e-01	ci right 4.809724e-01	k: 249399	n:520000
GRM1   520000 perm   218 sec   (2389 perm/sec)   p_kst 4.796135e-01   p_cons 2.909615e-03   p_joint 1.217692e-02

Joint ci ratio: 4.838660e-02	ci left: 1.193601e-02	ci right 1.252972e-02	k: 6482	n:530000
Cons ci ratio: 9.948670e-02	ci left: 2.775409e-03	ci right 3.067803e-03	k: 1547	n:530000
KS ci ratio: 5.609301e-03	ci left: 4.782165e-01	ci right 4.809083e-01	k: 254168	n:530000
GRM1   530000 perm   224 sec   (2369 perm/sec)   p_kst 4.795623e-01   p_cons 2.918868e-03   p_joint 1.223019e-02

Outputting figure to mutsig2_images.part000000000075/GRM1.26_3682_530000_0.47956_0.0029189_0.01223.png
                gene_name: GRM1
               theta_stop: 0.099 
                    nperm: 530000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.0029 
      ci_cons_bounds_left: 0.0028 
     ci_cons_bounds_right: 0.0031 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 2 percent done.
GRIN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 1.577910e-02	ci left: 8.536564e-01	ci right 8.673329e-01	k: 8606	n:10000
GRIN2B   10000 perm   2 sec   (4778 perm/sec)   p_kst 8.606000e-01   p_cons 5.538000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRIN2B.22_4503_10000_0.8606_0.5538_1.png
                gene_name: GRIN2B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
GRIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
GRIN3A   10000 perm   2 sec   (5282 perm/sec)   p_kst 1.148000e-01   p_cons 6.182000e-01   p_joint 2.011000e-01

Joint ci ratio: 5.289361e-02	ci left: 2.097192e-01	ci right 2.211636e-01	k: 4308	n:20000
Cons ci ratio: 2.172462e-02	ci left: 6.126792e-01	ci right 6.261861e-01	k: 12389	n:20000
KS ci ratio: 7.689281e-02	ci left: 1.105607e-01	ci right 1.194516e-01	k: 2299	n:20000
GRIN3A   20000 perm   4 sec   (4799 perm/sec)   p_kst 1.149500e-01   p_cons 6.194500e-01   p_joint 2.154000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN3A.19_3384_20000_0.11495_0.61945_0.2154.png
                gene_name: GRIN3A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 6 percent done.
GRM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
GRM8   10000 perm   2 sec   (4879 perm/sec)   p_kst 3.660000e-02   p_cons 6.100000e-03   p_joint 8.100000e-03

Joint ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
Cons ci ratio: 3.362310e-01	ci left: 5.616577e-03	ci right 7.930323e-03	k: 134	n:20000
KS ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
GRM8   20000 perm   4 sec   (4450 perm/sec)   p_kst 3.645000e-02   p_cons 6.700000e-03   p_joint 3.850000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 3.203351e-01	ci left: 4.172084e-03	ci right 5.792735e-03	k: 148	n:30000
KS ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
GRM8   30000 perm   7 sec   (4281 perm/sec)   p_kst 3.780000e-02   p_cons 4.933333e-03   p_joint 2.966667e-03

Joint ci ratio: 4.615547e-01	ci left: 1.386542e-03	ci right 2.238401e-03	k: 71	n:40000
Cons ci ratio: 2.360005e-01	ci left: 6.041636e-03	ci right 7.681186e-03	k: 273	n:40000
KS ci ratio: 9.919391e-02	ci left: 3.570814e-02	ci right 3.945938e-02	k: 1502	n:40000
GRM8   40000 perm   10 sec   (4175 perm/sec)   p_kst 3.755000e-02   p_cons 6.825000e-03   p_joint 1.775000e-03

Joint ci ratio: 4.584617e-01	ci left: 1.126877e-03	ci right 1.813103e-03	k: 72	n:50000
Cons ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
KS ci ratio: 8.856898e-02	ci left: 3.602780e-02	ci right 3.938614e-02	k: 1884	n:50000
GRM8   50000 perm   12 sec   (4084 perm/sec)   p_kst 3.768000e-02   p_cons 6.860000e-03   p_joint 1.440000e-03

Joint ci ratio: 4.585183e-01	ci left: 9.390409e-04	ci right 1.510966e-03	k: 72	n:60000
Cons ci ratio: 1.903761e-01	ci left: 6.348493e-03	ci right 7.699852e-03	k: 420	n:60000
KS ci ratio: 8.077798e-02	ci left: 3.623904e-02	ci right 3.930588e-02	k: 2265	n:60000
GRM8   60000 perm   15 sec   (4006 perm/sec)   p_kst 3.775000e-02   p_cons 7.000000e-03   p_joint 1.200000e-03

Joint ci ratio: 3.020693e-01	ci left: 2.037936e-03	ci right 2.775708e-03	k: 167	n:70000
Cons ci ratio: 1.777485e-01	ci left: 6.286488e-03	ci right 7.526345e-03	k: 482	n:70000
KS ci ratio: 7.504694e-02	ci left: 3.610466e-02	ci right 3.893384e-02	k: 2625	n:70000
GRM8   70000 perm   18 sec   (3938 perm/sec)   p_kst 3.750000e-02   p_cons 6.885714e-03   p_joint 2.385714e-03

Joint ci ratio: 2.926648e-01	ci left: 1.910420e-03	ci right 2.576502e-03	k: 178	n:80000
Cons ci ratio: 1.656653e-01	ci left: 6.374023e-03	ci right 7.537165e-03	k: 555	n:80000
KS ci ratio: 7.043376e-02	ci left: 3.596057e-02	ci right 3.859812e-02	k: 2981	n:80000
GRM8   80000 perm   21 sec   (3874 perm/sec)   p_kst 3.726250e-02   p_cons 6.937500e-03   p_joint 2.225000e-03

Joint ci ratio: 2.910766e-01	ci left: 1.718720e-03	ci right 2.314110e-03	k: 180	n:90000
Cons ci ratio: 1.545205e-01	ci left: 6.551153e-03	ci right 7.658751e-03	k: 638	n:90000
KS ci ratio: 6.665108e-02	ci left: 3.577617e-02	ci right 3.825379e-02	k: 3330	n:90000
GRM8   90000 perm   24 sec   (3817 perm/sec)   p_kst 3.700000e-02   p_cons 7.088889e-03   p_joint 2.000000e-03

Joint ci ratio: 1.637213e-01	ci left: 5.233192e-03	ci right 6.175826e-03	k: 569	n:100000
Cons ci ratio: 1.463836e-01	ci left: 6.598581e-03	ci right 7.650311e-03	k: 711	n:100000
KS ci ratio: 6.355345e-02	ci left: 3.548401e-02	ci right 3.782297e-02	k: 3664	n:100000
GRM8   100000 perm   27 sec   (3763 perm/sec)   p_kst 3.664000e-02   p_cons 7.110000e-03   p_joint 5.690000e-03

Joint ci ratio: 1.738632e-01	ci left: 4.199986e-03	ci right 5.008293e-03	k: 505	n:110000
Cons ci ratio: 1.402219e-01	ci left: 6.559664e-03	ci right 7.557501e-03	k: 775	n:110000
KS ci ratio: 6.040559e-02	ci left: 3.575780e-02	ci right 3.799397e-02	k: 4055	n:110000
GRM8   110000 perm   30 sec   (3710 perm/sec)   p_kst 3.686364e-02   p_cons 7.045455e-03   p_joint 4.590909e-03

Joint ci ratio: 1.689389e-01	ci left: 4.089243e-03	ci right 4.851676e-03	k: 535	n:120000
Cons ci ratio: 1.354290e-01	ci left: 6.463580e-03	ci right 7.410484e-03	k: 831	n:120000
KS ci ratio: 5.784569e-02	ci left: 3.579112e-02	ci right 3.793134e-02	k: 4422	n:120000
GRM8   120000 perm   33 sec   (3657 perm/sec)   p_kst 3.685000e-02   p_cons 6.925000e-03   p_joint 4.458333e-03

Joint ci ratio: 1.636856e-01	ci left: 4.032702e-03	ci right 4.758909e-03	k: 570	n:130000
Cons ci ratio: 1.310218e-01	ci left: 6.390215e-03	ci right 7.293532e-03	k: 888	n:130000
KS ci ratio: 5.549574e-02	ci left: 3.593485e-02	ci right 3.799356e-02	k: 4804	n:130000
GRM8   130000 perm   36 sec   (3604 perm/sec)   p_kst 3.695385e-02   p_cons 6.830769e-03   p_joint 4.384615e-03

Joint ci ratio: 2.213229e-01	ci left: 1.988352e-03	ci right 2.489764e-03	k: 312	n:140000
Cons ci ratio: 1.298829e-01	ci left: 6.044256e-03	ci right 6.890666e-03	k: 904	n:140000
KS ci ratio: 5.346962e-02	ci left: 3.598200e-02	ci right 3.796581e-02	k: 5175	n:140000
GRM8   140000 perm   39 sec   (3556 perm/sec)   p_kst 3.696429e-02   p_cons 6.457143e-03   p_joint 2.228571e-03

Joint ci ratio: 2.120378e-01	ci left: 2.032341e-03	ci right 2.520551e-03	k: 340	n:150000
Cons ci ratio: 1.265100e-01	ci left: 5.957479e-03	ci right 6.768446e-03	k: 953	n:150000
KS ci ratio: 5.173758e-02	ci left: 3.590553e-02	ci right 3.781909e-02	k: 5528	n:150000
GRM8   150000 perm   43 sec   (3511 perm/sec)   p_kst 3.685333e-02   p_cons 6.353333e-03   p_joint 2.266667e-03

Joint ci ratio: 2.055125e-01	ci left: 2.035632e-03	ci right 2.507694e-03	k: 362	n:160000
Cons ci ratio: 1.225292e-01	ci left: 5.966625e-03	ci right 6.751424e-03	k: 1016	n:160000
KS ci ratio: 5.025685e-02	ci left: 3.570988e-02	ci right 3.755696e-02	k: 5860	n:160000
GRM8   160000 perm   46 sec   (3464 perm/sec)   p_kst 3.662500e-02   p_cons 6.350000e-03   p_joint 2.262500e-03

Joint ci ratio: 2.182454e-01	ci left: 1.687464e-03	ci right 2.106286e-03	k: 321	n:170000
Cons ci ratio: 1.330214e-01	ci left: 4.744161e-03	ci right 5.425826e-03	k: 863	n:170000
KS ci ratio: 4.886357e-02	ci left: 3.558446e-02	ci right 3.737257e-02	k: 6200	n:170000
GRM8   170000 perm   50 sec   (3421 perm/sec)   p_kst 3.647059e-02   p_cons 5.076471e-03   p_joint 1.888235e-03

Joint ci ratio: 2.203230e-01	ci left: 1.562202e-03	ci right 1.954124e-03	k: 315	n:180000
Cons ci ratio: 1.285569e-01	ci left: 4.808409e-03	ci right 5.474348e-03	k: 924	n:180000
KS ci ratio: 4.748973e-02	ci left: 3.560541e-02	ci right 3.734289e-02	k: 6564	n:180000
GRM8   180000 perm   53 sec   (3378 perm/sec)   p_kst 3.646667e-02   p_cons 5.133333e-03   p_joint 1.750000e-03

Joint ci ratio: 2.024982e-01	ci left: 1.769129e-03	ci right 2.172625e-03	k: 373	n:190000
Cons ci ratio: 1.174208e-01	ci left: 5.489026e-03	ci right 6.178814e-03	k: 1107	n:190000
KS ci ratio: 4.612553e-02	ci left: 3.577572e-02	ci right 3.747003e-02	k: 6957	n:190000
GRM8   190000 perm   57 sec   (3339 perm/sec)   p_kst 3.661579e-02   p_cons 5.826316e-03   p_joint 1.963158e-03

Joint ci ratio: 2.009001e-01	ci left: 1.709152e-03	ci right 2.095514e-03	k: 379	n:200000
Cons ci ratio: 1.145621e-01	ci left: 5.486451e-03	ci right 6.157994e-03	k: 1163	n:200000
KS ci ratio: 4.492964e-02	ci left: 3.584062e-02	ci right 3.749285e-02	k: 7332	n:200000
GRM8   200000 perm   61 sec   (3298 perm/sec)   p_kst 3.666000e-02   p_cons 5.815000e-03   p_joint 1.895000e-03

Joint ci ratio: 2.001194e-01	ci left: 1.641326e-03	ci right 2.010738e-03	k: 382	n:210000
Cons ci ratio: 1.124602e-01	ci left: 5.428757e-03	ci right 6.080238e-03	k: 1207	n:210000
KS ci ratio: 4.384580e-02	ci left: 3.586215e-02	ci right 3.747448e-02	k: 7699	n:210000
GRM8   210000 perm   64 sec   (3260 perm/sec)   p_kst 3.666190e-02   p_cons 5.747619e-03   p_joint 1.819048e-03

Joint ci ratio: 1.965611e-01	ci left: 1.627195e-03	ci right 1.986135e-03	k: 396	n:220000
Cons ci ratio: 1.100726e-01	ci left: 5.416198e-03	ci right 6.051477e-03	k: 1260	n:220000
KS ci ratio: 4.288926e-02	ci left: 3.579669e-02	ci right 3.737010e-02	k: 8047	n:220000
GRM8   220000 perm   68 sec   (3224 perm/sec)   p_kst 3.657727e-02   p_cons 5.727273e-03   p_joint 1.800000e-03

Joint ci ratio: 1.946144e-01	ci left: 1.589524e-03	ci right 1.936269e-03	k: 404	n:230000
Cons ci ratio: 1.077485e-01	ci left: 5.413327e-03	ci right 6.034012e-03	k: 1315	n:230000
KS ci ratio: 4.202649e-02	ci left: 3.568132e-02	ci right 3.721735e-02	k: 8382	n:230000
GRM8   230000 perm   72 sec   (3186 perm/sec)   p_kst 3.644348e-02   p_cons 5.717391e-03   p_joint 1.756522e-03

Joint ci ratio: 1.917960e-01	ci left: 1.570874e-03	ci right 1.908009e-03	k: 416	n:240000
Cons ci ratio: 1.047995e-01	ci left: 5.491977e-03	ci right 6.103384e-03	k: 1390	n:240000
KS ci ratio: 4.120884e-02	ci left: 3.558411e-02	ci right 3.708544e-02	k: 8719	n:240000
GRM8   240000 perm   76 sec   (3148 perm/sec)   p_kst 3.632917e-02   p_cons 5.791667e-03   p_joint 1.733333e-03

Joint ci ratio: 1.897624e-01	ci left: 1.542317e-03	ci right 1.869409e-03	k: 425	n:250000
Cons ci ratio: 1.026451e-01	ci left: 5.502177e-03	ci right 6.101367e-03	k: 1449	n:250000
KS ci ratio: 4.040242e-02	ci left: 3.555437e-02	ci right 3.702441e-02	k: 9071	n:250000
GRM8   250000 perm   80 sec   (3113 perm/sec)   p_kst 3.628400e-02   p_cons 5.796000e-03   p_joint 1.700000e-03

Joint ci ratio: 1.875761e-01	ci left: 1.519641e-03	ci right 1.837787e-03	k: 435	n:260000
Cons ci ratio: 1.007526e-01	ci left: 5.496712e-03	ci right 6.083618e-03	k: 1504	n:260000
KS ci ratio: 3.967214e-02	ci left: 3.547385e-02	ci right 3.691344e-02	k: 9409	n:260000
GRM8   260000 perm   85 sec   (3074 perm/sec)   p_kst 3.618846e-02   p_cons 5.784615e-03   p_joint 1.673077e-03

Joint ci ratio: 1.880144e-01	ci left: 1.456294e-03	ci right 1.761972e-03	k: 433	n:270000
Cons ci ratio: 9.889740e-02	ci left: 5.498971e-03	ci right 6.074679e-03	k: 1561	n:270000
KS ci ratio: 3.892212e-02	ci left: 3.550225e-02	ci right 3.691514e-02	k: 9775	n:270000
GRM8   270000 perm   89 sec   (3038 perm/sec)   p_kst 3.620370e-02   p_cons 5.781481e-03   p_joint 1.603704e-03

Joint ci ratio: 1.909051e-01	ci left: 1.360050e-03	ci right 1.650425e-03	k: 420	n:280000
Cons ci ratio: 9.696047e-02	ci left: 5.522071e-03	ci right 6.088231e-03	k: 1624	n:280000
KS ci ratio: 3.821114e-02	ci left: 3.553239e-02	ci right 3.692009e-02	k: 10142	n:280000
GRM8   280000 perm   93 sec   (3004 perm/sec)   p_kst 3.622143e-02   p_cons 5.800000e-03   p_joint 1.500000e-03

Joint ci ratio: 2.017587e-01	ci left: 1.168868e-03	ci right 1.434362e-03	k: 376	n:290000
Cons ci ratio: 9.533209e-02	ci left: 5.520115e-03	ci right 6.076038e-03	k: 1680	n:290000
KS ci ratio: 3.764192e-02	ci left: 3.536932e-02	ci right 3.672962e-02	k: 10453	n:290000
GRM8   290000 perm   98 sec   (2970 perm/sec)   p_kst 3.604483e-02   p_cons 5.793103e-03   p_joint 1.296552e-03

Joint ci ratio: 2.085174e-01	ci left: 1.054008e-03	ci right 1.302456e-03	k: 352	n:300000
Cons ci ratio: 8.753748e-02	ci left: 6.349227e-03	ci right 6.933698e-03	k: 1991	n:300000
KS ci ratio: 3.700655e-02	ci left: 3.538575e-02	ci right 3.672323e-02	k: 10815	n:300000
GRM8   300000 perm   102 sec   (2937 perm/sec)   p_kst 3.605000e-02   p_cons 6.636667e-03   p_joint 1.173333e-03

Joint ci ratio: 2.053428e-01	ci left: 1.053653e-03	ci right 1.297762e-03	k: 363	n:310000
Cons ci ratio: 8.610138e-02	ci left: 6.355850e-03	ci right 6.930850e-03	k: 2058	n:310000
KS ci ratio: 3.642597e-02	ci left: 3.535654e-02	ci right 3.667151e-02	k: 11163	n:310000
GRM8   310000 perm   107 sec   (2908 perm/sec)   p_kst 3.600968e-02   p_cons 6.638710e-03   p_joint 1.170968e-03

Joint ci ratio: 1.918378e-01	ci left: 1.178132e-03	ci right 1.431038e-03	k: 416	n:320000
Cons ci ratio: 8.861387e-02	ci left: 5.808688e-03	ci right 6.350315e-03	k: 1944	n:320000
KS ci ratio: 3.581706e-02	ci left: 3.543464e-02	ci right 3.673003e-02	k: 11545	n:320000
GRM8   320000 perm   111 sec   (2881 perm/sec)   p_kst 3.607813e-02   p_cons 6.075000e-03   p_joint 1.300000e-03

Joint ci ratio: 1.930037e-01	ci left: 1.128007e-03	ci right 1.371796e-03	k: 411	n:330000
Cons ci ratio: 8.721240e-02	ci left: 5.819381e-03	ci right 6.352985e-03	k: 2007	n:330000
KS ci ratio: 3.527606e-02	ci left: 3.543307e-02	ci right 3.670843e-02	k: 11902	n:330000
GRM8   330000 perm   116 sec   (2852 perm/sec)   p_kst 3.606667e-02   p_cons 6.081818e-03   p_joint 1.245455e-03

Joint ci ratio: 1.981286e-01	ci left: 1.036084e-03	ci right 1.266671e-03	k: 390	n:340000
Cons ci ratio: 8.614784e-02	ci left: 5.792090e-03	ci right 6.316383e-03	k: 2057	n:340000
KS ci ratio: 3.477799e-02	ci left: 3.539381e-02	ci right 3.664941e-02	k: 12246	n:340000
GRM8   340000 perm   120 sec   (2823 perm/sec)   p_kst 3.601765e-02   p_cons 6.050000e-03   p_joint 1.147059e-03

Joint ci ratio: 2.007181e-01	ci left: 9.793338e-04	ci right 1.200489e-03	k: 380	n:350000
Cons ci ratio: 8.475802e-02	ci left: 5.816738e-03	ci right 6.334348e-03	k: 2125	n:350000
KS ci ratio: 3.427926e-02	ci left: 3.539941e-02	ci right 3.663685e-02	k: 12605	n:350000
GRM8   350000 perm   125 sec   (2796 perm/sec)   p_kst 3.601429e-02   p_cons 6.071429e-03   p_joint 1.085714e-03

Joint ci ratio: 2.064985e-01	ci left: 8.967661e-04	ci right 1.105844e-03	k: 359	n:360000
Cons ci ratio: 8.374113e-02	ci left: 5.796561e-03	ci right 6.305884e-03	k: 2177	n:360000
KS ci ratio: 3.380275e-02	ci left: 3.540208e-02	ci right 3.662207e-02	k: 12963	n:360000
GRM8   360000 perm   130 sec   (2770 perm/sec)   p_kst 3.600833e-02   p_cons 6.047222e-03   p_joint 9.972222e-04

Joint ci ratio: 2.045206e-01	ci left: 8.904742e-04	ci right 1.095848e-03	k: 366	n:370000
Cons ci ratio: 8.274131e-02	ci left: 5.780156e-03	ci right 6.281681e-03	k: 2230	n:370000
KS ci ratio: 3.332352e-02	ci left: 3.545029e-02	ci right 3.665429e-02	k: 13338	n:370000
GRM8   370000 perm   135 sec   (2745 perm/sec)   p_kst 3.604865e-02   p_cons 6.027027e-03   p_joint 9.891892e-04

Joint ci ratio: 1.722839e-01	ci left: 1.243314e-03	ci right 1.480184e-03	k: 516	n:380000
Cons ci ratio: 8.154333e-02	ci left: 5.798166e-03	ci right 6.293623e-03	k: 2296	n:380000
KS ci ratio: 3.285292e-02	ci left: 3.551957e-02	ci right 3.670857e-02	k: 13722	n:380000
GRM8   380000 perm   140 sec   (2719 perm/sec)   p_kst 3.611053e-02   p_cons 6.042105e-03   p_joint 1.357895e-03

Joint ci ratio: 1.721203e-01	ci left: 1.213886e-03	ci right 1.444907e-03	k: 517	n:390000
Cons ci ratio: 8.060208e-02	ci left: 5.785147e-03	ci right 6.273518e-03	k: 2350	n:390000
KS ci ratio: 3.242199e-02	ci left: 3.554216e-02	ci right 3.671602e-02	k: 14089	n:390000
GRM8   390000 perm   145 sec   (2694 perm/sec)   p_kst 3.612564e-02   p_cons 6.025641e-03   p_joint 1.325641e-03

Joint ci ratio: 1.399520e-01	ci left: 1.820481e-03	ci right 2.096813e-03	k: 782	n:400000
Cons ci ratio: 7.936138e-02	ci left: 5.821823e-03	ci right 6.305374e-03	k: 2424	n:400000
KS ci ratio: 3.201563e-02	ci left: 3.554636e-02	ci right 3.670537e-02	k: 14449	n:400000
GRM8   400000 perm   150 sec   (2669 perm/sec)   p_kst 3.612250e-02   p_cons 6.060000e-03   p_joint 1.955000e-03

Joint ci ratio: 1.438744e-01	ci left: 1.677268e-03	ci right 1.939609e-03	k: 740	n:410000
Cons ci ratio: 7.834993e-02	ci left: 5.830457e-03	ci right 6.308272e-03	k: 2487	n:410000
KS ci ratio: 3.163636e-02	ci left: 3.552381e-02	ci right 3.666812e-02	k: 14798	n:410000
GRM8   410000 perm   155 sec   (2645 perm/sec)   p_kst 3.609268e-02   p_cons 6.065854e-03   p_joint 1.804878e-03

Joint ci ratio: 1.431057e-01	ci left: 1.655695e-03	ci right 1.913161e-03	k: 748	n:420000
Cons ci ratio: 7.740673e-02	ci left: 5.834046e-03	ci right 6.306141e-03	k: 2548	n:420000
KS ci ratio: 3.125955e-02	ci left: 3.552605e-02	ci right 3.665655e-02	k: 15157	n:420000
GRM8   420000 perm   160 sec   (2621 perm/sec)   p_kst 3.608810e-02   p_cons 6.066667e-03   p_joint 1.780952e-03

Joint ci ratio: 1.432045e-01	ci left: 1.614946e-03	ci right 1.866263e-03	k: 747	n:430000
Cons ci ratio: 7.651155e-02	ci left: 5.835220e-03	ci right 6.301706e-03	k: 2608	n:430000
KS ci ratio: 3.088558e-02	ci left: 3.555134e-02	ci right 3.666888e-02	k: 15526	n:430000
GRM8   430000 perm   166 sec   (2598 perm/sec)   p_kst 3.610698e-02   p_cons 6.065116e-03   p_joint 1.737209e-03

Joint ci ratio: 1.434959e-01	ci left: 1.571666e-03	ci right 1.816789e-03	k: 744	n:440000
Cons ci ratio: 7.561822e-02	ci left: 5.840831e-03	ci right 6.302073e-03	k: 2670	n:440000
KS ci ratio: 3.052471e-02	ci left: 3.557556e-02	ci right 3.668056e-02	k: 15895	n:440000
GRM8   440000 perm   171 sec   (2574 perm/sec)   p_kst 3.612500e-02   p_cons 6.068182e-03   p_joint 1.690909e-03

Joint ci ratio: 1.449678e-01	ci left: 1.504606e-03	ci right 1.741885e-03	k: 729	n:450000
Cons ci ratio: 7.482436e-02	ci left: 5.835318e-03	ci right 6.291077e-03	k: 2727	n:450000
KS ci ratio: 3.017331e-02	ci left: 3.560539e-02	ci right 3.669837e-02	k: 16267	n:450000
GRM8   450000 perm   176 sec   (2551 perm/sec)   p_kst 3.614889e-02   p_cons 6.060000e-03   p_joint 1.620000e-03

Joint ci ratio: 1.441812e-01	ci left: 1.488659e-03	ci right 1.722039e-03	k: 737	n:460000
Cons ci ratio: 7.398820e-02	ci left: 5.840739e-03	ci right 6.291604e-03	k: 2789	n:460000
KS ci ratio: 2.986079e-02	ci left: 3.557141e-02	ci right 3.665184e-02	k: 16610	n:460000
GRM8   460000 perm   182 sec   (2528 perm/sec)   p_kst 3.610870e-02   p_cons 6.063043e-03   p_joint 1.602174e-03

Joint ci ratio: 1.437939e-01	ci left: 1.465188e-03	ci right 1.694218e-03	k: 741	n:470000
Cons ci ratio: 7.314076e-02	ci left: 5.852223e-03	ci right 6.298580e-03	k: 2854	n:470000
KS ci ratio: 2.953249e-02	ci left: 3.559808e-02	ci right 3.666723e-02	k: 16981	n:470000
GRM8   470000 perm   188 sec   (2506 perm/sec)   p_kst 3.612979e-02   p_cons 6.072340e-03   p_joint 1.576596e-03

Joint ci ratio: 1.462856e-01	ci left: 1.384465e-03	ci right 1.604955e-03	k: 716	n:480000
Cons ci ratio: 7.235920e-02	ci left: 5.857119e-03	ci right 6.298875e-03	k: 2916	n:480000
KS ci ratio: 2.923314e-02	ci left: 3.558025e-02	ci right 3.663786e-02	k: 17331	n:480000
GRM8   480000 perm   193 sec   (2484 perm/sec)   p_kst 3.610625e-02   p_cons 6.075000e-03   p_joint 1.491667e-03

Joint ci ratio: 1.445813e-01	ci left: 1.389643e-03	ci right 1.608156e-03	k: 733	n:490000
Cons ci ratio: 7.160217e-02	ci left: 5.861839e-03	ci right 6.299134e-03	k: 2978	n:490000
KS ci ratio: 2.893507e-02	ci left: 3.558145e-02	ci right 3.662813e-02	k: 17690	n:490000
GRM8   490000 perm   199 sec   (2463 perm/sec)   p_kst 3.610204e-02   p_cons 6.077551e-03   p_joint 1.495918e-03

Joint ci ratio: 1.427450e-01	ci left: 1.398484e-03	ci right 1.615358e-03	k: 752	n:500000
Cons ci ratio: 7.092710e-02	ci left: 5.856570e-03	ci right 6.289183e-03	k: 3035	n:500000
KS ci ratio: 2.865747e-02	ci left: 3.555485e-02	ci right 3.659054e-02	k: 18035	n:500000
GRM8   500000 perm   205 sec   (2443 perm/sec)   p_kst 3.607000e-02   p_cons 6.070000e-03   p_joint 1.504000e-03

Joint ci ratio: 1.419004e-01	ci left: 1.388081e-03	ci right 1.601960e-03	k: 761	n:510000
Cons ci ratio: 7.030509e-02	ci left: 5.845747e-03	ci right 6.273619e-03	k: 3089	n:510000
KS ci ratio: 2.836371e-02	ci left: 3.558775e-02	ci right 3.661360e-02	k: 18410	n:510000
GRM8   510000 perm   211 sec   (2422 perm/sec)   p_kst 3.609804e-02   p_cons 6.056863e-03   p_joint 1.492157e-03

Joint ci ratio: 1.403432e-01	ci left: 1.392926e-03	ci right 1.604998e-03	k: 778	n:520000
Cons ci ratio: 6.964346e-02	ci left: 5.844805e-03	ci right 6.268419e-03	k: 3148	n:520000
KS ci ratio: 2.809121e-02	ci left: 3.558888e-02	ci right 3.660475e-02	k: 18769	n:520000
GRM8   520000 perm   216 sec   (2403 perm/sec)   p_kst 3.609423e-02   p_cons 6.053846e-03   p_joint 1.496154e-03

Joint ci ratio: 1.401651e-01	ci left: 1.370284e-03	ci right 1.578623e-03	k: 780	n:530000
Cons ci ratio: 6.900017e-02	ci left: 5.843917e-03	ci right 6.263397e-03	k: 3207	n:530000
KS ci ratio: 2.782264e-02	ci left: 3.559939e-02	ci right 3.660569e-02	k: 19133	n:530000
GRM8   530000 perm   222 sec   (2383 perm/sec)   p_kst 3.610000e-02   p_cons 6.050943e-03   p_joint 1.471698e-03

Joint ci ratio: 1.389256e-01	ci left: 1.369929e-03	ci right 1.576219e-03	k: 794	n:540000
Cons ci ratio: 6.826933e-02	ci left: 5.861282e-03	ci right 6.277377e-03	k: 3276	n:540000
KS ci ratio: 2.756604e-02	ci left: 3.559851e-02	ci right 3.659536e-02	k: 19491	n:540000
GRM8   540000 perm   228 sec   (2364 perm/sec)   p_kst 3.609444e-02   p_cons 6.066667e-03   p_joint 1.470370e-03

Joint ci ratio: 1.396328e-01	ci left: 1.330981e-03	ci right 1.532511e-03	k: 786	n:550000
Cons ci ratio: 6.776531e-02	ci left: 5.842287e-03	ci right 6.253851e-03	k: 3325	n:550000
KS ci ratio: 2.729145e-02	ci left: 3.566093e-02	ci right 3.664942e-02	k: 19884	n:550000
GRM8   550000 perm   235 sec   (2345 perm/sec)   p_kst 3.615273e-02   p_cons 6.045455e-03   p_joint 1.429091e-03

Joint ci ratio: 1.390168e-01	ci left: 1.319277e-03	ci right 1.518081e-03	k: 793	n:560000
Cons ci ratio: 6.714231e-02	ci left: 5.846808e-03	ci right 6.254756e-03	k: 3387	n:560000
KS ci ratio: 2.703598e-02	ci left: 3.569278e-02	ci right 3.667274e-02	k: 20261	n:560000
GRM8   560000 perm   241 sec   (2326 perm/sec)   p_kst 3.618036e-02   p_cons 6.048214e-03   p_joint 1.416071e-03

Joint ci ratio: 1.399930e-01	ci left: 1.277505e-03	ci right 1.471479e-03	k: 782	n:570000
Cons ci ratio: 6.650709e-02	ci left: 5.856363e-03	ci right 6.260963e-03	k: 3452	n:570000
KS ci ratio: 2.682600e-02	ci left: 3.562419e-02	ci right 3.659457e-02	k: 20581	n:570000
GRM8   570000 perm   247 sec   (2307 perm/sec)   p_kst 3.610702e-02   p_cons 6.056140e-03   p_joint 1.371930e-03

Joint ci ratio: 1.390202e-01	ci left: 1.273783e-03	ci right 1.465736e-03	k: 793	n:580000
Cons ci ratio: 6.585191e-02	ci left: 5.872390e-03	ci right 6.273948e-03	k: 3521	n:580000
KS ci ratio: 2.660170e-02	ci left: 3.560768e-02	ci right 3.656937e-02	k: 20930	n:580000
GRM8   580000 perm   253 sec   (2289 perm/sec)   p_kst 3.608621e-02   p_cons 6.070690e-03   p_joint 1.367241e-03

Joint ci ratio: 1.382395e-01	ci left: 1.266918e-03	ci right 1.456676e-03	k: 802	n:590000
Cons ci ratio: 6.513365e-02	ci left: 5.902899e-03	ci right 6.301974e-03	k: 3599	n:590000
KS ci ratio: 2.639452e-02	ci left: 3.556145e-02	ci right 3.651430e-02	k: 21261	n:590000
GRM8   590000 perm   260 sec   (2272 perm/sec)   p_kst 3.603559e-02   p_cons 6.100000e-03   p_joint 1.359322e-03

Joint ci ratio: 1.373871e-01	ci left: 1.261895e-03	ci right 1.449640e-03	k: 812	n:600000
Cons ci ratio: 6.452670e-02	ci left: 5.916014e-03	ci right 6.312110e-03	k: 3667	n:600000
KS ci ratio: 2.617325e-02	ci left: 3.556647e-02	ci right 3.651135e-02	k: 21622	n:600000
GRM8   600000 perm   266 sec   (2254 perm/sec)   p_kst 3.603667e-02   p_cons 6.111667e-03   p_joint 1.353333e-03

Joint ci ratio: 1.386756e-01	ci left: 1.217465e-03	ci right 1.400439e-03	k: 797	n:610000
Cons ci ratio: 6.400540e-02	ci left: 5.915811e-03	ci right 6.308574e-03	k: 3727	n:610000
KS ci ratio: 2.594827e-02	ci left: 3.559580e-02	ci right 3.653320e-02	k: 21998	n:610000
GRM8   610000 perm   273 sec   (2236 perm/sec)   p_kst 3.606230e-02   p_cons 6.109836e-03   p_joint 1.306557e-03

Joint ci ratio: 1.264194e-01	ci left: 1.450483e-03	ci right 1.647770e-03	k: 959	n:620000
Cons ci ratio: 6.340397e-02	ci left: 5.933088e-03	ci right 6.323161e-03	k: 3798	n:620000
KS ci ratio: 2.574392e-02	ci left: 3.558414e-02	ci right 3.651375e-02	k: 22349	n:620000
GRM8   620000 perm   280 sec   (2218 perm/sec)   p_kst 3.604677e-02   p_cons 6.125806e-03   p_joint 1.546774e-03

Joint ci ratio: 1.171330e-01	ci left: 1.670635e-03	ci right 1.880020e-03	k: 1117	n:630000
Cons ci ratio: 6.292560e-02	ci left: 5.929521e-03	ci right 6.316312e-03	k: 3856	n:630000
KS ci ratio: 2.555658e-02	ci left: 3.553975e-02	ci right 3.646135e-02	k: 22679	n:630000
GRM8   630000 perm   286 sec   (2200 perm/sec)   p_kst 3.599841e-02   p_cons 6.120635e-03   p_joint 1.773016e-03

Joint ci ratio: 1.172923e-01	ci left: 1.639980e-03	ci right 1.845822e-03	k: 1114	n:640000
Cons ci ratio: 6.229004e-02	ci left: 5.958380e-03	ci right 6.342986e-03	k: 3935	n:640000
KS ci ratio: 2.536641e-02	ci left: 3.551541e-02	ci right 3.642942e-02	k: 23021	n:640000
GRM8   640000 perm   293 sec   (2183 perm/sec)   p_kst 3.597031e-02   p_cons 6.148438e-03   p_joint 1.740625e-03

Joint ci ratio: 1.166149e-01	ci left: 1.634164e-03	ci right 1.838010e-03	k: 1127	n:650000
Cons ci ratio: 6.178959e-02	ci left: 5.963647e-03	ci right 6.345390e-03	k: 3999	n:650000
KS ci ratio: 2.517708e-02	ci left: 3.550102e-02	ci right 3.640774e-02	k: 23369	n:650000
GRM8   650000 perm   300 sec   (2167 perm/sec)   p_kst 3.595231e-02   p_cons 6.152308e-03   p_joint 1.733846e-03

Joint ci ratio: 1.156449e-01	ci left: 1.637356e-03	ci right 1.839785e-03	k: 1146	n:660000
Cons ci ratio: 6.140753e-02	ci left: 5.947878e-03	ci right 6.326173e-03	k: 4049	n:660000
KS ci ratio: 2.498482e-02	ci left: 3.550666e-02	ci right 3.640651e-02	k: 23730	n:660000
GRM8   660000 perm   307 sec   (2151 perm/sec)   p_kst 3.595455e-02   p_cons 6.134848e-03   p_joint 1.736364e-03

Joint ci ratio: 1.146986e-01	ci left: 1.640459e-03	ci right 1.841500e-03	k: 1165	n:670000
Cons ci ratio: 6.093534e-02	ci left: 5.951696e-03	ci right 6.327221e-03	k: 4112	n:670000
KS ci ratio: 2.480116e-02	ci left: 3.550030e-02	ci right 3.639327e-02	k: 24083	n:670000
GRM8   670000 perm   314 sec   (2135 perm/sec)   p_kst 3.594478e-02   p_cons 6.137313e-03   p_joint 1.738806e-03

Joint ci ratio: 1.149472e-01	ci left: 1.609192e-03	ci right 1.806857e-03	k: 1160	n:680000
Cons ci ratio: 6.051034e-02	ci left: 5.948169e-03	ci right 6.320763e-03	k: 4170	n:680000
KS ci ratio: 2.462255e-02	ci left: 3.549122e-02	ci right 3.637744e-02	k: 24434	n:680000
GRM8   680000 perm   321 sec   (2119 perm/sec)   p_kst 3.593235e-02   p_cons 6.132353e-03   p_joint 1.705882e-03

Joint ci ratio: 1.141148e-01	ci left: 1.609802e-03	ci right 1.806014e-03	k: 1177	n:690000
Cons ci ratio: 6.006554e-02	ci left: 5.950465e-03	ci right 6.320367e-03	k: 4232	n:690000
KS ci ratio: 2.444416e-02	ci left: 3.549251e-02	ci right 3.637226e-02	k: 24792	n:690000
GRM8   690000 perm   328 sec   (2104 perm/sec)   p_kst 3.593043e-02   p_cons 6.133333e-03   p_joint 1.705797e-03

Joint ci ratio: 1.050002e-01	ci left: 1.882780e-03	ci right 2.092804e-03	k: 1390	n:700000
Cons ci ratio: 5.969336e-02	ci left: 5.940038e-03	ci right 6.306924e-03	k: 4285	n:700000
KS ci ratio: 2.426809e-02	ci left: 3.549805e-02	ci right 3.637151e-02	k: 25153	n:700000
GRM8   700000 perm   335 sec   (2090 perm/sec)   p_kst 3.593286e-02   p_cons 6.121429e-03   p_joint 1.985714e-03

Joint ci ratio: 1.048884e-01	ci left: 1.860375e-03	ci right 2.067666e-03	k: 1393	n:710000
Cons ci ratio: 5.923879e-02	ci left: 5.947952e-03	ci right 6.312434e-03	k: 4351	n:710000
KS ci ratio: 2.410753e-02	ci left: 3.546985e-02	ci right 3.633676e-02	k: 25490	n:710000
GRM8   710000 perm   342 sec   (2075 perm/sec)   p_kst 3.590141e-02   p_cons 6.128169e-03   p_joint 1.961972e-03

Joint ci ratio: 1.046644e-01	ci left: 1.842651e-03	ci right 2.047501e-03	k: 1399	n:720000
Cons ci ratio: 5.881455e-02	ci left: 5.951550e-03	ci right 6.313552e-03	k: 4414	n:720000
KS ci ratio: 2.393715e-02	ci left: 3.547973e-02	ci right 3.634067e-02	k: 25854	n:720000
GRM8   720000 perm   350 sec   (2059 perm/sec)   p_kst 3.590833e-02   p_cons 6.130556e-03   p_joint 1.943056e-03

Joint ci ratio: 1.041823e-01	ci left: 1.834752e-03	ci right 2.037726e-03	k: 1412	n:730000
Cons ci ratio: 5.847818e-02	ci left: 5.938859e-03	ci right 6.297954e-03	k: 4465	n:730000
KS ci ratio: 2.376844e-02	ci left: 3.549482e-02	ci right 3.634997e-02	k: 26222	n:730000
GRM8   730000 perm   357 sec   (2044 perm/sec)   p_kst 3.592055e-02   p_cons 6.116438e-03   p_joint 1.934247e-03

Joint ci ratio: 1.036704e-01	ci left: 1.828385e-03	ci right 2.029600e-03	k: 1426	n:740000
Cons ci ratio: 5.806996e-02	ci left: 5.942499e-03	ci right 6.299221e-03	k: 4528	n:740000
KS ci ratio: 2.361201e-02	ci left: 3.548398e-02	ci right 3.633317e-02	k: 26571	n:740000
GRM8   740000 perm   364 sec   (2030 perm/sec)   p_kst 3.590676e-02   p_cons 6.118919e-03   p_joint 1.927027e-03

Joint ci ratio: 1.038908e-01	ci left: 1.796212e-03	ci right 1.994333e-03	k: 1420	n:750000
Cons ci ratio: 5.772712e-02	ci left: 5.934223e-03	ci right 6.288275e-03	k: 4582	n:750000
KS ci ratio: 2.345546e-02	ci left: 3.548274e-02	ci right 3.632619e-02	k: 26927	n:750000
GRM8   750000 perm   372 sec   (2016 perm/sec)   p_kst 3.590267e-02   p_cons 6.109333e-03   p_joint 1.893333e-03

Joint ci ratio: 1.031672e-01	ci left: 1.798212e-03	ci right 1.995089e-03	k: 1440	n:760000
Cons ci ratio: 5.724760e-02	ci left: 5.956002e-03	ci right 6.308304e-03	k: 4659	n:760000
KS ci ratio: 2.330021e-02	ci left: 3.548677e-02	ci right 3.632466e-02	k: 27287	n:760000
GRM8   760000 perm   380 sec   (2002 perm/sec)   p_kst 3.590395e-02   p_cons 6.130263e-03   p_joint 1.894737e-03

Joint ci ratio: 1.038202e-01	ci left: 1.752085e-03	ci right 1.945200e-03	k: 1422	n:770000
Cons ci ratio: 5.694335e-02	ci left: 5.942659e-03	ci right 6.292241e-03	k: 4709	n:770000
KS ci ratio: 2.314583e-02	ci left: 3.549718e-02	ci right 3.632969e-02	k: 27652	n:770000
GRM8   770000 perm   387 sec   (1988 perm/sec)   p_kst 3.591169e-02   p_cons 6.115584e-03   p_joint 1.846753e-03

Joint ci ratio: 1.037484e-01	ci left: 1.732119e-03	ci right 1.922893e-03	k: 1424	n:780000
Cons ci ratio: 5.665587e-02	ci left: 5.927134e-03	ci right 6.273985e-03	k: 4757	n:780000
KS ci ratio: 2.299959e-02	ci left: 3.549204e-02	ci right 3.631910e-02	k: 28005	n:780000
GRM8   780000 perm   395 sec   (1974 perm/sec)   p_kst 3.590385e-02   p_cons 6.098718e-03   p_joint 1.825641e-03

Joint ci ratio: 1.037861e-01	ci left: 1.708960e-03	ci right 1.897255e-03	k: 1423	n:790000
Cons ci ratio: 5.623161e-02	ci left: 5.941961e-03	ci right 6.286992e-03	k: 4829	n:790000
KS ci ratio: 2.286613e-02	ci left: 3.545684e-02	ci right 3.627822e-02	k: 28334	n:790000
GRM8   790000 perm   403 sec   (1961 perm/sec)   p_kst 3.586582e-02   p_cons 6.112658e-03   p_joint 1.801266e-03

Joint ci ratio: 1.034602e-01	ci left: 1.698556e-03	ci right 1.885081e-03	k: 1432	n:800000
Cons ci ratio: 5.590862e-02	ci left: 5.936705e-03	ci right 6.279386e-03	k: 4885	n:800000
KS ci ratio: 2.273003e-02	ci left: 3.543744e-02	ci right 3.625342e-02	k: 28675	n:800000
GRM8   800000 perm   411 sec   (1948 perm/sec)   p_kst 3.584375e-02   p_cons 6.106250e-03   p_joint 1.790000e-03

Joint ci ratio: 1.027456e-01	ci left: 1.701641e-03	ci right 1.887137e-03	k: 1452	n:810000
Cons ci ratio: 5.561945e-02	ci left: 5.925496e-03	ci right 6.265705e-03	k: 4936	n:810000
KS ci ratio: 2.257938e-02	ci left: 3.547011e-02	ci right 3.628136e-02	k: 29058	n:810000
GRM8   810000 perm   419 sec   (1935 perm/sec)   p_kst 3.587407e-02   p_cons 6.093827e-03   p_joint 1.792593e-03

Joint ci ratio: 1.028176e-01	ci left: 1.678512e-03	ci right 1.861622e-03	k: 1450	n:820000
Cons ci ratio: 5.533471e-02	ci left: 5.914565e-03	ci right 6.252353e-03	k: 4987	n:820000
KS ci ratio: 2.243921e-02	ci left: 3.547895e-02	ci right 3.628531e-02	k: 29422	n:820000
GRM8   820000 perm   427 sec   (1922 perm/sec)   p_kst 3.588049e-02   p_cons 6.081707e-03   p_joint 1.768293e-03

Joint ci ratio: 1.032473e-01	ci left: 1.644202e-03	ci right 1.824364e-03	k: 1438	n:830000
Cons ci ratio: 5.504881e-02	ci left: 5.905091e-03	ci right 6.240539e-03	k: 5039	n:830000
KS ci ratio: 2.229346e-02	ci left: 3.551276e-02	ci right 3.631458e-02	k: 29807	n:830000
GRM8   830000 perm   435 sec   (1908 perm/sec)   p_kst 3.591205e-02   p_cons 6.071084e-03   p_joint 1.732530e-03

Joint ci ratio: 1.033924e-01	ci left: 1.619988e-03	ci right 1.797762e-03	k: 1434	n:840000
Cons ci ratio: 5.469170e-02	ci left: 5.912286e-03	ci right 6.245896e-03	k: 5105	n:840000
KS ci ratio: 2.216499e-02	ci left: 3.550079e-02	ci right 3.629765e-02	k: 30154	n:840000
GRM8   840000 perm   443 sec   (1896 perm/sec)   p_kst 3.589762e-02   p_cons 6.077381e-03   p_joint 1.707143e-03

Joint ci ratio: 1.046052e-01	ci left: 1.563113e-03	ci right 1.736782e-03	k: 1401	n:850000
Cons ci ratio: 5.432032e-02	ci left: 5.923961e-03	ci right 6.255889e-03	k: 5175	n:850000
KS ci ratio: 2.204096e-02	ci left: 3.548209e-02	ci right 3.627402e-02	k: 30495	n:850000
GRM8   850000 perm   451 sec   (1883 perm/sec)   p_kst 3.587647e-02   p_cons 6.088235e-03   p_joint 1.648235e-03

Joint ci ratio: 1.043827e-01	ci left: 1.551731e-03	ci right 1.723746e-03	k: 1407	n:860000
Cons ci ratio: 5.400303e-02	ci left: 5.925048e-03	ci right 6.255036e-03	k: 5236	n:860000
KS ci ratio: 2.191346e-02	ci left: 3.548119e-02	ci right 3.626846e-02	k: 30851	n:860000
GRM8   860000 perm   460 sec   (1870 perm/sec)   p_kst 3.587326e-02   p_cons 6.088372e-03   p_joint 1.636047e-03

Joint ci ratio: 1.036853e-01	ci left: 1.555166e-03	ci right 1.726340e-03	k: 1426	n:870000
Cons ci ratio: 5.366577e-02	ci left: 5.931785e-03	ci right 6.260022e-03	k: 5302	n:870000
KS ci ratio: 2.178960e-02	ci left: 3.547574e-02	ci right 3.625839e-02	k: 31203	n:870000
GRM8   870000 perm   468 sec   (1857 perm/sec)   p_kst 3.586552e-02   p_cons 6.094253e-03   p_joint 1.639080e-03

Joint ci ratio: 1.101793e-01	ci left: 1.357208e-03	ci right 1.516557e-03	k: 1263	n:880000
Cons ci ratio: 5.330479e-02	ci left: 5.945104e-03	ci right 6.271797e-03	k: 5374	n:880000
KS ci ratio: 2.165465e-02	ci left: 3.551226e-02	ci right 3.629080e-02	k: 31592	n:880000
GRM8   880000 perm   477 sec   (1845 perm/sec)   p_kst 3.590000e-02   p_cons 6.106818e-03   p_joint 1.435227e-03

Joint ci ratio: 1.097032e-01	ci left: 1.353978e-03	ci right 1.512216e-03	k: 1274	n:890000
Cons ci ratio: 5.299015e-02	ci left: 5.949260e-03	ci right 6.274192e-03	k: 5438	n:890000
KS ci ratio: 2.153720e-02	ci left: 3.549991e-02	ci right 3.627390e-02	k: 31938	n:890000
GRM8   890000 perm   486 sec   (1832 perm/sec)   p_kst 3.588539e-02   p_cons 6.110112e-03   p_joint 1.431461e-03

Joint ci ratio: 1.088104e-01	ci left: 1.361630e-03	ci right 1.519384e-03	k: 1295	n:900000
Cons ci ratio: 5.265216e-02	ci left: 5.959908e-03	ci right 6.283283e-03	k: 5508	n:900000
KS ci ratio: 2.141201e-02	ci left: 3.551879e-02	ci right 3.628864e-02	k: 32312	n:900000
GRM8   900000 perm   494 sec   (1821 perm/sec)   p_kst 3.590222e-02   p_cons 6.120000e-03   p_joint 1.438889e-03

Joint ci ratio: 1.035438e-01	ci left: 1.491087e-03	ci right 1.654969e-03	k: 1430	n:910000
Cons ci ratio: 5.225932e-02	ci left: 5.984429e-03	ci right 6.306639e-03	k: 5591	n:910000
KS ci ratio: 2.129371e-02	ci left: 3.552197e-02	ci right 3.628758e-02	k: 32672	n:910000
GRM8   910000 perm   503 sec   (1809 perm/sec)   p_kst 3.590330e-02   p_cons 6.143956e-03   p_joint 1.571429e-03

Joint ci ratio: 1.040558e-01	ci left: 1.460056e-03	ci right 1.621370e-03	k: 1416	n:920000
Cons ci ratio: 5.196736e-02	ci left: 5.986967e-03	ci right 6.307459e-03	k: 5654	n:920000
KS ci ratio: 2.117071e-02	ci left: 3.554672e-02	ci right 3.630838e-02	k: 33052	n:920000
GRM8   920000 perm   512 sec   (1796 perm/sec)   p_kst 3.592609e-02   p_cons 6.145652e-03   p_joint 1.539130e-03

Joint ci ratio: 1.038002e-01	ci left: 1.451687e-03	ci right 1.611659e-03	k: 1423	n:930000
Cons ci ratio: 5.161217e-02	ci left: 6.005377e-03	ci right 6.324592e-03	k: 5732	n:930000
KS ci ratio: 2.105405e-02	ci left: 3.555704e-02	ci right 3.631468e-02	k: 33419	n:930000
GRM8   930000 perm   521 sec   (1785 perm/sec)   p_kst 3.593441e-02   p_cons 6.163441e-03   p_joint 1.530108e-03

Joint ci ratio: 1.030786e-01	ci left: 1.456970e-03	ci right 1.616340e-03	k: 1443	n:940000
Cons ci ratio: 5.126860e-02	ci left: 6.022353e-03	ci right 6.340276e-03	k: 5809	n:940000
KS ci ratio: 2.094123e-02	ci left: 3.556080e-02	ci right 3.631441e-02	k: 33780	n:940000
GRM8   940000 perm   530 sec   (1773 perm/sec)   p_kst 3.593617e-02   p_cons 6.179787e-03   p_joint 1.535106e-03

Joint ci ratio: 1.025122e-01	ci left: 1.458042e-03	ci right 1.616601e-03	k: 1459	n:950000
Cons ci ratio: 5.095358e-02	ci left: 6.033782e-03	ci right 6.350293e-03	k: 5881	n:950000
KS ci ratio: 2.081788e-02	ci left: 3.560533e-02	ci right 3.635539e-02	k: 34180	n:950000
GRM8   950000 perm   539 sec   (1762 perm/sec)   p_kst 3.597895e-02   p_cons 6.190526e-03   p_joint 1.535789e-03

Joint ci ratio: 1.020243e-01	ci left: 1.457065e-03	ci right 1.614717e-03	k: 1473	n:960000
Cons ci ratio: 5.075592e-02	ci left: 6.018236e-03	ci right 6.332672e-03	k: 5927	n:960000
KS ci ratio: 2.071657e-02	ci left: 3.558262e-02	ci right 3.632851e-02	k: 34516	n:960000
GRM8   960000 perm   548 sec   (1751 perm/sec)   p_kst 3.595417e-02   p_cons 6.173958e-03   p_joint 1.534375e-03

Joint ci ratio: 8.911730e-02	ci left: 1.901986e-03	ci right 2.080390e-03	k: 1930	n:970000
Cons ci ratio: 5.050104e-02	ci left: 6.017265e-03	ci right 6.330025e-03	k: 5987	n:970000
KS ci ratio: 2.060508e-02	ci left: 3.559937e-02	ci right 3.634155e-02	k: 34890	n:970000
GRM8   970000 perm   558 sec   (1740 perm/sec)   p_kst 3.596907e-02   p_cons 6.172165e-03   p_joint 1.989691e-03

Outputting figure to mutsig2_images.part000000000075/GRM8.19_2817_970000_0.035969_0.0061722_0.0019897.png
                gene_name: GRM8
               theta_stop: 0.089 
                    nperm: 970000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0063 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 8 percent done.
GRM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
Cons ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
KS ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
GRM7   10000 perm   2 sec   (5578 perm/sec)   p_kst 4.611000e-01   p_cons 4.980000e-01   p_joint 8.490000e-01

Outputting figure to mutsig2_images.part000000000075/GRM7.15_2863_10000_0.4611_0.498_0.849.png
                gene_name: GRM7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
GRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
Cons ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
KS ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
GRM5   10000 perm   2 sec   (5084 perm/sec)   p_kst 9.110000e-02   p_cons 5.184000e-01   p_joint 2.757000e-01

Joint ci ratio: 5.759612e-02	ci left: 1.826057e-01	ci right 1.934851e-01	k: 3760	n:20000
Cons ci ratio: 2.523326e-02	ci left: 5.398695e-01	ci right 5.537169e-01	k: 10936	n:20000
KS ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
GRM5   20000 perm   4 sec   (4648 perm/sec)   p_kst 9.085000e-02   p_cons 5.468000e-01   p_joint 1.880000e-01

Outputting figure to mutsig2_images.part000000000075/GRM5.13_3675_20000_0.09085_0.5468_0.188.png
                gene_name: GRM5
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 12 percent done.
GTF3C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
KS ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
GTF3C1   10000 perm   2 sec   (4240 perm/sec)   p_kst 3.872000e-01   p_cons 4.776000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000075/GTF3C1.13_6478_10000_0.3872_0.4776_0.5897.png
                gene_name: GTF3C1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 14 percent done.
GRLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
Cons ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
GRLF1   10000 perm   2 sec   (5469 perm/sec)   p_kst 1.170000e-01   p_cons 4.480000e-02   p_joint 3.050000e-02

Joint ci ratio: 1.706635e-01	ci left: 2.350321e-02	ci right 2.793614e-02	k: 513	n:20000
Cons ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
KS ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
GRLF1   20000 perm   4 sec   (4891 perm/sec)   p_kst 1.108000e-01   p_cons 4.410000e-02   p_joint 2.565000e-02

Joint ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
Cons ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
KS ci ratio: 6.440811e-02	ci left: 1.063492e-01	ci right 1.134599e-01	k: 3296	n:30000
GRLF1   30000 perm   6 sec   (4684 perm/sec)   p_kst 1.098667e-01   p_cons 4.110000e-02   p_joint 4.496667e-02

Joint ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
Cons ci ratio: 9.404630e-02	ci left: 3.966408e-02	ci right 4.360282e-02	k: 1664	n:40000
KS ci ratio: 5.637166e-02	ci left: 1.048015e-01	ci right 1.109055e-01	k: 4313	n:40000
GRLF1   40000 perm   9 sec   (4566 perm/sec)   p_kst 1.078250e-01   p_cons 4.160000e-02   p_joint 4.185000e-02

Outputting figure to mutsig2_images.part000000000075/GRLF1.9_4524_40000_0.10783_0.0416_0.04185.png
                gene_name: GRLF1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 16 percent done.
GRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
Cons ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
GRM3   10000 perm   2 sec   (5556 perm/sec)   p_kst 5.697000e-01   p_cons 9.160000e-02   p_joint 2.022000e-01

Joint ci ratio: 4.088470e-02	ci left: 3.084154e-01	ci right 3.213385e-01	k: 6297	n:20000
Cons ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
KS ci ratio: 2.430522e-02	ci left: 5.583958e-01	ci right 5.721853e-01	k: 11306	n:20000
GRM3   20000 perm   4 sec   (5078 perm/sec)   p_kst 5.653000e-01   p_cons 9.530000e-02   p_joint 3.148500e-01

Outputting figure to mutsig2_images.part000000000075/GRM3.9_2660_20000_0.5653_0.0953_0.31485.png
                gene_name: GRM3
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
GRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
GRM4   10000 perm   2 sec   (5818 perm/sec)   p_kst 4.375000e-01   p_cons 5.038000e-01   p_joint 5.282000e-01

Outputting figure to mutsig2_images.part000000000075/GRM4.9_2779_10000_0.4375_0.5038_0.5282.png
                gene_name: GRM4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
GRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
KS ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
GRK5   10000 perm   2 sec   (5704 perm/sec)   p_kst 9.493000e-01   p_cons 5.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK5.8_1837_10000_0.9493_0.5442_1.png
                gene_name: GRK5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
GTDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
GTDC1   10000 perm   2 sec   (6241 perm/sec)   p_kst 3.309000e-01   p_cons 1.360000e-02   p_joint 8.000000e-02

Joint ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
Cons ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
KS ci ratio: 3.877032e-02	ci left: 3.316422e-01	ci right 3.448048e-01	k: 6764	n:20000
GTDC1   20000 perm   4 sec   (5616 perm/sec)   p_kst 3.382000e-01   p_cons 1.315000e-02   p_joint 2.215000e-02

Joint ci ratio: 1.396263e-01	ci left: 2.380998e-02	ci right 2.741602e-02	k: 767	n:30000
Cons ci ratio: 1.971993e-01	ci left: 1.171716e-02	ci right 1.431175e-02	k: 389	n:30000
KS ci ratio: 3.154888e-02	ci left: 3.343730e-01	ci right 3.451247e-01	k: 10192	n:30000
GTDC1   30000 perm   6 sec   (5395 perm/sec)   p_kst 3.397333e-01   p_cons 1.296667e-02   p_joint 2.556667e-02

Joint ci ratio: 9.117002e-02	ci left: 4.215749e-02	ci right 4.620901e-02	k: 1766	n:40000
Cons ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
KS ci ratio: 2.720632e-02	ci left: 3.370014e-01	ci right 3.463216e-01	k: 13666	n:40000
GTDC1   40000 perm   8 sec   (5242 perm/sec)   p_kst 3.416500e-01   p_cons 1.297500e-02   p_joint 4.415000e-02

Joint ci ratio: 8.946049e-02	ci left: 3.532325e-02	ci right 3.865078e-02	k: 1848	n:50000
Cons ci ratio: 1.505372e-01	ci left: 1.237199e-02	ci right 1.440509e-02	k: 668	n:50000
KS ci ratio: 2.428412e-02	ci left: 3.384195e-01	ci right 3.467588e-01	k: 17129	n:50000
GTDC1   50000 perm   10 sec   (5114 perm/sec)   p_kst 3.425800e-01   p_cons 1.336000e-02   p_joint 3.696000e-02

Joint ci ratio: 6.530459e-02	ci left: 5.479700e-02	ci right 5.851269e-02	k: 3398	n:60000
Cons ci ratio: 1.383676e-01	ci left: 1.228596e-02	ci right 1.412824e-02	k: 791	n:60000
KS ci ratio: 2.216417e-02	ci left: 3.388685e-01	ci right 3.464801e-01	k: 20560	n:60000
GTDC1   60000 perm   12 sec   (4995 perm/sec)   p_kst 3.426667e-01   p_cons 1.318333e-02   p_joint 5.663333e-02

Joint ci ratio: 5.907148e-02	ci left: 5.743471e-02	ci right 6.094480e-02	k: 4142	n:70000
Cons ci ratio: 1.276147e-01	ci left: 1.245061e-02	ci right 1.416151e-02	k: 930	n:70000
KS ci ratio: 2.055902e-02	ci left: 3.383000e-01	ci right 3.453417e-01	k: 23927	n:70000
GTDC1   70000 perm   14 sec   (4896 perm/sec)   p_kst 3.418143e-01   p_cons 1.328571e-02   p_joint 5.917143e-02

Joint ci ratio: 5.872996e-02	ci left: 5.119868e-02	ci right 5.430885e-02	k: 4219	n:80000
Cons ci ratio: 1.196580e-01	ci left: 1.244483e-02	ci right 1.404076e-02	k: 1058	n:80000
KS ci ratio: 1.924419e-02	ci left: 3.382259e-01	ci right 3.448105e-01	k: 27321	n:80000
GTDC1   80000 perm   17 sec   (4803 perm/sec)   p_kst 3.415125e-01   p_cons 1.322500e-02   p_joint 5.273750e-02

Joint ci ratio: 5.127111e-02	ci left: 5.942306e-02	ci right 6.256086e-02	k: 5488	n:90000
Cons ci ratio: 1.133158e-01	ci left: 1.237812e-02	ci right 1.387572e-02	k: 1180	n:90000
KS ci ratio: 1.809942e-02	ci left: 3.395101e-01	ci right 3.457223e-01	k: 30835	n:90000
GTDC1   90000 perm   19 sec   (4715 perm/sec)   p_kst 3.426111e-01   p_cons 1.311111e-02   p_joint 6.097778e-02

Joint ci ratio: 5.212929e-02	ci left: 5.212313e-02	ci right 5.492284e-02	k: 5351	n:100000
Cons ci ratio: 1.073031e-01	ci left: 1.246283e-02	ci right 1.388561e-02	k: 1316	n:100000
KS ci ratio: 1.713683e-02	ci left: 3.405563e-01	ci right 3.464528e-01	k: 34350	n:100000
GTDC1   100000 perm   22 sec   (4629 perm/sec)   p_kst 3.435000e-01   p_cons 1.316000e-02   p_joint 5.351000e-02

Joint ci ratio: 5.424766e-02	ci left: 4.408748e-02	ci right 4.655475e-02	k: 4984	n:110000
Cons ci ratio: 1.028395e-01	ci left: 1.236550e-02	ci right 1.371490e-02	k: 1433	n:110000
KS ci ratio: 1.633574e-02	ci left: 3.407931e-01	ci right 3.464151e-01	k: 37796	n:110000
GTDC1   110000 perm   24 sec   (4550 perm/sec)   p_kst 3.436000e-01   p_cons 1.302727e-02   p_joint 4.530909e-02

Joint ci ratio: 5.267383e-02	ci left: 4.295342e-02	ci right 4.528534e-02	k: 5293	n:120000
Cons ci ratio: 9.889025e-02	ci left: 1.228543e-02	ci right 1.357161e-02	k: 1550	n:120000
KS ci ratio: 1.565563e-02	ci left: 3.404718e-01	ci right 3.458524e-01	k: 41179	n:120000
GTDC1   120000 perm   27 sec   (4473 perm/sec)   p_kst 3.431583e-01   p_cons 1.291667e-02   p_joint 4.410833e-02

Outputting figure to mutsig2_images.part000000000075/GTDC1.8_1413_120000_0.34316_0.012917_0.044108.png
                gene_name: GTDC1
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 24 percent done.
GRM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
Cons ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
KS ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
GRM6   10000 perm   2 sec   (5860 perm/sec)   p_kst 6.385000e-01   p_cons 1.733000e-01   p_joint 3.975000e-01

Outputting figure to mutsig2_images.part000000000075/GRM6.7_2674_10000_0.6385_0.1733_0.3975.png
                gene_name: GRM6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 26 percent done.
GRXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
Cons ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
GRXCR1   10000 perm   2 sec   (6604 perm/sec)   p_kst 7.920000e-01   p_cons 1.506000e-01   p_joint 5.287000e-01

Outputting figure to mutsig2_images.part000000000075/GRXCR1.7_889_10000_0.792_0.1506_0.5287.png
                gene_name: GRXCR1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 28 percent done.
GRIN2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
KS ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
GRIN2D   10000 perm   2 sec   (5190 perm/sec)   p_kst 8.090000e-02   p_cons 1.010000e-02   p_joint 3.730000e-02

Joint ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
Cons ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
GRIN2D   20000 perm   4 sec   (4760 perm/sec)   p_kst 8.010000e-02   p_cons 1.015000e-02   p_joint 1.465000e-02

Joint ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
Cons ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
KS ci ratio: 7.826475e-02	ci left: 7.413862e-02	ci right 8.021024e-02	k: 2314	n:30000
GRIN2D   30000 perm   7 sec   (4568 perm/sec)   p_kst 7.713333e-02   p_cons 9.900000e-03   p_joint 2.373333e-02

Joint ci ratio: 1.111628e-01	ci left: 2.847158e-02	ci right 3.184708e-02	k: 1205	n:40000
Cons ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
KS ci ratio: 6.770426e-02	ci left: 7.470104e-02	ci right 7.996051e-02	k: 3092	n:40000
GRIN2D   40000 perm   9 sec   (4454 perm/sec)   p_kst 7.730000e-02   p_cons 9.975000e-03   p_joint 3.012500e-02

Joint ci ratio: 9.577098e-02	ci left: 3.086522e-02	ci right 3.398937e-02	k: 1620	n:50000
Cons ci ratio: 1.730344e-01	ci left: 9.280380e-03	ci right 1.105718e-02	k: 507	n:50000
KS ci ratio: 6.070354e-02	ci left: 7.463843e-02	ci right 7.933082e-02	k: 3848	n:50000
GRIN2D   50000 perm   11 sec   (4351 perm/sec)   p_kst 7.696000e-02   p_cons 1.014000e-02   p_joint 3.240000e-02

Joint ci ratio: 9.873148e-02	ci left: 2.433464e-02	ci right 2.687820e-02	k: 1535	n:60000
Cons ci ratio: 1.665330e-01	ci left: 8.387624e-03	ci right 9.927083e-03	k: 548	n:60000
KS ci ratio: 5.512931e-02	ci left: 7.557013e-02	ci right 7.987082e-02	k: 4662	n:60000
GRIN2D   60000 perm   14 sec   (4269 perm/sec)   p_kst 7.770000e-02   p_cons 9.133333e-03   p_joint 2.558333e-02

Joint ci ratio: 9.285359e-02	ci left: 2.367450e-02	ci right 2.599369e-02	k: 1737	n:70000
Cons ci ratio: 1.555957e-01	ci left: 8.286188e-03	ci right 9.697821e-03	k: 628	n:70000
KS ci ratio: 5.126071e-02	ci left: 7.512022e-02	ci right 7.908635e-02	k: 5396	n:70000
GRIN2D   70000 perm   17 sec   (4193 perm/sec)   p_kst 7.708571e-02   p_cons 8.971429e-03   p_joint 2.481429e-02

Joint ci ratio: 8.019534e-02	ci left: 2.783578e-02	ci right 3.017354e-02	k: 2319	n:80000
Cons ci ratio: 1.443216e-01	ci left: 8.477685e-03	ci right 9.808278e-03	k: 730	n:80000
KS ci ratio: 4.796268e-02	ci left: 7.521121e-02	ci right 7.891953e-02	k: 6164	n:80000
GRIN2D   80000 perm   19 sec   (4110 perm/sec)   p_kst 7.705000e-02   p_cons 9.125000e-03   p_joint 2.898750e-02

Joint ci ratio: 7.346252e-02	ci left: 2.953893e-02	ci right 3.180256e-02	k: 2759	n:90000
Cons ci ratio: 1.356006e-01	ci left: 8.575811e-03	ci right 9.833906e-03	k: 827	n:90000
KS ci ratio: 4.531398e-02	ci left: 7.502450e-02	ci right 7.851395e-02	k: 6908	n:90000
GRIN2D   90000 perm   22 sec   (4040 perm/sec)   p_kst 7.675556e-02   p_cons 9.188889e-03   p_joint 3.065556e-02

Joint ci ratio: 7.177998e-02	ci left: 2.791949e-02	ci right 3.000795e-02	k: 2895	n:100000
Cons ci ratio: 1.287834e-01	ci left: 8.588481e-03	ci right 9.780248e-03	k: 917	n:100000
KS ci ratio: 4.295430e-02	ci left: 7.522625e-02	ci right 7.853834e-02	k: 7687	n:100000
GRIN2D   100000 perm   25 sec   (3978 perm/sec)   p_kst 7.687000e-02   p_cons 9.170000e-03   p_joint 2.895000e-02

Joint ci ratio: 7.703201e-02	ci left: 2.211327e-02	ci right 2.389382e-02	k: 2529	n:110000
Cons ci ratio: 1.235207e-01	ci left: 8.512016e-03	ci right 9.641369e-03	k: 997	n:110000
KS ci ratio: 4.093384e-02	ci left: 7.537716e-02	ci right 7.853609e-02	k: 8464	n:110000
GRIN2D   110000 perm   28 sec   (3923 perm/sec)   p_kst 7.694545e-02   p_cons 9.063636e-03   p_joint 2.299091e-02

Joint ci ratio: 7.364339e-02	ci left: 2.221652e-02	ci right 2.392331e-02	k: 2767	n:120000
Cons ci ratio: 1.173265e-01	ci left: 8.675623e-03	ci right 9.764959e-03	k: 1105	n:120000
KS ci ratio: 3.914882e-02	ci left: 7.559681e-02	ci right 7.862366e-02	k: 9252	n:120000
GRIN2D   120000 perm   31 sec   (3870 perm/sec)   p_kst 7.710000e-02   p_cons 9.208333e-03   p_joint 2.305833e-02

Joint ci ratio: 6.692051e-02	ci left: 2.485413e-02	ci right 2.658250e-02	k: 3342	n:130000
Cons ci ratio: 1.125894e-01	ci left: 8.718039e-03	ci right 9.765566e-03	k: 1200	n:130000
KS ci ratio: 3.764571e-02	ci left: 7.553354e-02	ci right 7.843921e-02	k: 10007	n:130000
GRIN2D   130000 perm   34 sec   (3819 perm/sec)   p_kst 7.697692e-02   p_cons 9.230769e-03   p_joint 2.570769e-02

Joint ci ratio: 6.871979e-02	ci left: 2.193314e-02	ci right 2.350100e-02	k: 3179	n:140000
Cons ci ratio: 1.087652e-01	ci left: 8.692597e-03	ci right 9.699317e-03	k: 1286	n:140000
KS ci ratio: 3.625236e-02	ci left: 7.567957e-02	ci right 7.848084e-02	k: 10790	n:140000
GRIN2D   140000 perm   37 sec   (3769 perm/sec)   p_kst 7.707143e-02   p_cons 9.185714e-03   p_joint 2.270714e-02

Joint ci ratio: 6.463641e-02	ci left: 2.315918e-02	ci right 2.471263e-02	k: 3589	n:150000
Cons ci ratio: 1.047300e-01	ci left: 8.768467e-03	ci right 9.743977e-03	k: 1387	n:150000
KS ci ratio: 3.504083e-02	ci left: 7.565574e-02	ci right 7.836064e-02	k: 11550	n:150000
GRIN2D   150000 perm   40 sec   (3721 perm/sec)   p_kst 7.700000e-02   p_cons 9.246667e-03   p_joint 2.392667e-02

Joint ci ratio: 6.264543e-02	ci left: 2.313865e-02	ci right 2.464117e-02	k: 3821	n:160000
Cons ci ratio: 1.013883e-01	ci left: 8.786710e-03	ci right 9.731201e-03	k: 1480	n:160000
KS ci ratio: 3.397307e-02	ci left: 7.551224e-02	ci right 7.812812e-02	k: 12290	n:160000
GRIN2D   160000 perm   44 sec   (3672 perm/sec)   p_kst 7.681250e-02   p_cons 9.250000e-03   p_joint 2.388125e-02

Joint ci ratio: 6.226683e-02	ci left: 2.207248e-02	ci right 2.349680e-02	k: 3872	n:170000
Cons ci ratio: 9.888776e-02	ci left: 8.705689e-03	ci right 9.617050e-03	k: 1556	n:170000
KS ci ratio: 3.296582e-02	ci left: 7.552101e-02	ci right 7.805815e-02	k: 13053	n:170000
GRIN2D   170000 perm   47 sec   (3622 perm/sec)   p_kst 7.678235e-02   p_cons 9.152941e-03   p_joint 2.277647e-02

Outputting figure to mutsig2_images.part000000000075/GRIN2D.6_4059_170000_0.076782_0.0091529_0.022776.png
                gene_name: GRIN2D
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0096 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 30 percent done.
GRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
Cons ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
KS ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
GRIP1   10000 perm   2 sec   (5800 perm/sec)   p_kst 1.629000e-01   p_cons 7.700000e-02   p_joint 1.223000e-01

Joint ci ratio: 1.006450e-01	ci left: 6.694105e-02	ci right 7.408442e-02	k: 1409	n:20000
Cons ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
KS ci ratio: 6.305346e-02	ci left: 1.568193e-01	ci right 1.670792e-01	k: 3238	n:20000
GRIP1   20000 perm   4 sec   (5220 perm/sec)   p_kst 1.619000e-01   p_cons 6.670000e-02   p_joint 7.045000e-02

Joint ci ratio: 6.260894e-02	ci left: 1.119367e-01	ci right 1.192046e-01	k: 3466	n:30000
Cons ci ratio: 8.434209e-02	ci left: 6.432686e-02	ci right 7.002398e-02	k: 2014	n:30000
KS ci ratio: 5.270842e-02	ci left: 1.515481e-01	ci right 1.597854e-01	k: 4669	n:30000
GRIP1   30000 perm   6 sec   (5008 perm/sec)   p_kst 1.556333e-01   p_cons 6.713333e-02   p_joint 1.155333e-01

Outputting figure to mutsig2_images.part000000000075/GRIP1.6_3327_30000_0.15563_0.067133_0.11553.png
                gene_name: GRIP1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 32 percent done.
GRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
GRK4   10000 perm   2 sec   (5897 perm/sec)   p_kst 9.095000e-01   p_cons 6.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK4.6_1801_10000_0.9095_0.6128_1.png
                gene_name: GRK4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
GTF2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
Cons ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
KS ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
GTF2E1   10000 perm   1 sec   (6791 perm/sec)   p_kst 2.490000e-02   p_cons 1.903000e-01   p_joint 5.530000e-02

Joint ci ratio: 1.133214e-01	ci left: 5.324249e-02	ci right 5.968722e-02	k: 1128	n:20000
Cons ci ratio: 6.022457e-02	ci left: 1.695095e-01	ci right 1.800852e-01	k: 3495	n:20000
KS ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
GTF2E1   20000 perm   3 sec   (6028 perm/sec)   p_kst 2.345000e-02   p_cons 1.747500e-01   p_joint 5.640000e-02

Joint ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
Cons ci ratio: 4.727250e-02	ci left: 1.820402e-01	ci right 1.908873e-01	k: 5593	n:30000
KS ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
GTF2E1   30000 perm   5 sec   (5734 perm/sec)   p_kst 2.443333e-02   p_cons 1.864333e-01   p_joint 1.966667e-02

Joint ci ratio: 1.239995e-01	ci left: 2.286163e-02	ci right 2.590796e-02	k: 974	n:40000
Cons ci ratio: 4.068359e-02	ci left: 1.845286e-01	ci right 1.922167e-01	k: 7534	n:40000
KS ci ratio: 1.246563e-01	ci left: 2.261923e-02	ci right 2.565040e-02	k: 964	n:40000
GTF2E1   40000 perm   7 sec   (5542 perm/sec)   p_kst 2.410000e-02   p_cons 1.883500e-01   p_joint 2.435000e-02

Joint ci ratio: 1.046024e-01	ci left: 2.588915e-02	ci right 2.876608e-02	k: 1365	n:50000
Cons ci ratio: 3.653139e-02	ci left: 1.837494e-01	ci right 1.906069e-01	k: 9358	n:50000
KS ci ratio: 1.116505e-01	ci left: 2.271509e-02	ci right 2.542056e-02	k: 1202	n:50000
GTF2E1   50000 perm   9 sec   (5388 perm/sec)   p_kst 2.404000e-02   p_cons 1.871600e-01   p_joint 2.730000e-02

Joint ci ratio: 8.851898e-02	ci left: 3.024725e-02	ci right 3.306496e-02	k: 1898	n:60000
Cons ci ratio: 3.334446e-02	ci left: 1.840857e-01	ci right 1.903446e-01	k: 11232	n:60000
KS ci ratio: 1.016560e-01	ci left: 2.295263e-02	ci right 2.542703e-02	k: 1450	n:60000
GTF2E1   60000 perm   11 sec   (5258 perm/sec)   p_kst 2.416667e-02   p_cons 1.872000e-01   p_joint 3.163333e-02

Joint ci ratio: 8.201967e-02	ci left: 3.030240e-02	ci right 3.290804e-02	k: 2211	n:70000
Cons ci ratio: 3.084372e-02	ci left: 1.845860e-01	ci right 1.903828e-01	k: 13123	n:70000
KS ci ratio: 9.068322e-02	ci left: 2.481970e-02	ci right 2.719124e-02	k: 1819	n:70000
GTF2E1   70000 perm   14 sec   (5135 perm/sec)   p_kst 2.598571e-02   p_cons 1.874714e-01   p_joint 3.158571e-02

Outputting figure to mutsig2_images.part000000000075/GTF2E1.6_1336_70000_0.025986_0.18747_0.031586.png
                gene_name: GTF2E1
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 36 percent done.
GRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
KS ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
GRM2   10000 perm   2 sec   (6173 perm/sec)   p_kst 7.549000e-01   p_cons 2.475000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000075/GRM2.5_2639_10000_0.7549_0.2475_0.5921.png
                gene_name: GRM2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 38 percent done.
GRPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
Cons ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
KS ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
GRPR   10000 perm   1 sec   (6799 perm/sec)   p_kst 8.347000e-01   p_cons 2.694000e-01   p_joint 7.665000e-01

Outputting figure to mutsig2_images.part000000000075/GRPR.5_1167_10000_0.8347_0.2694_0.7665.png
                gene_name: GRPR
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 40 percent done.
GTF2IRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
KS ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
GTF2IRD1   10000 perm   2 sec   (6061 perm/sec)   p_kst 6.127000e-01   p_cons 3.659000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2IRD1.5_2984_10000_0.6127_0.3659_0.5324.png
                gene_name: GTF2IRD1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
GRIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
GRIP2   10000 perm   2 sec   (5964 perm/sec)   p_kst 6.602000e-01   p_cons 3.201000e-01   p_joint 6.223000e-01

Outputting figure to mutsig2_images.part000000000075/GRIP2.4_3525_10000_0.6602_0.3201_0.6223.png
                gene_name: GRIP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 44 percent done.
GRK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
Cons ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
KS ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
GRK7   10000 perm   1 sec   (7041 perm/sec)   p_kst 3.466000e-01   p_cons 5.405000e-01   p_joint 4.945000e-01

Outputting figure to mutsig2_images.part000000000075/GRK7.4_1676_10000_0.3466_0.5405_0.4945.png
                gene_name: GRK7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 46 percent done.
GRSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
Cons ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
KS ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
GRSF1   10000 perm   1 sec   (7085 perm/sec)   p_kst 7.386000e-01   p_cons 3.433000e-01   p_joint 7.062000e-01

Outputting figure to mutsig2_images.part000000000075/GRSF1.4_1479_10000_0.7386_0.3433_0.7062.png
                gene_name: GRSF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 48 percent done.
GSG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
GSG1L   10000 perm   1 sec   (6757 perm/sec)   p_kst 3.800000e-03   p_cons 7.294000e-01   p_joint 9.200000e-03

Joint ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
Cons ci ratio: 1.690847e-02	ci left: 7.225806e-01	ci right 7.349528e-01	k: 14576	n:20000
KS ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
GSG1L   20000 perm   3 sec   (6029 perm/sec)   p_kst 3.850000e-03   p_cons 7.288000e-01   p_joint 1.865000e-02

Joint ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
Cons ci ratio: 1.381743e-02	ci left: 7.233953e-01	ci right 7.334938e-01	k: 21854	n:30000
KS ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
GSG1L   30000 perm   5 sec   (5731 perm/sec)   p_kst 3.800000e-03   p_cons 7.284667e-01   p_joint 1.086667e-02

Joint ci ratio: 2.262293e-01	ci left: 6.607120e-03	ci right 8.315554e-03	k: 297	n:40000
Cons ci ratio: 1.193503e-02	ci left: 7.251177e-01	ci right 7.338490e-01	k: 29180	n:40000
KS ci ratio: 3.183984e-01	ci left: 3.174780e-03	ci right 4.398997e-03	k: 150	n:40000
GSG1L   40000 perm   7 sec   (5562 perm/sec)   p_kst 3.750000e-03   p_cons 7.295000e-01   p_joint 7.425000e-03

Joint ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
Cons ci ratio: 1.067719e-02	ci left: 7.255027e-01	ci right 7.333106e-01	k: 36471	n:50000
KS ci ratio: 2.732201e-01	ci left: 3.540222e-03	ci right 4.678540e-03	k: 204	n:50000
GSG1L   50000 perm   9 sec   (5432 perm/sec)   p_kst 4.080000e-03   p_cons 7.294200e-01   p_joint 6.400000e-03

Joint ci ratio: 2.132521e-01	ci left: 5.002801e-03	ci right 6.212442e-03	k: 335	n:60000
Cons ci ratio: 9.746582e-03	ci left: 7.258593e-01	ci right 7.329852e-01	k: 43766	n:60000
KS ci ratio: 2.484032e-01	ci left: 3.620114e-03	ci right 4.662083e-03	k: 247	n:60000
GSG1L   60000 perm   11 sec   (5316 perm/sec)   p_kst 4.116667e-03   p_cons 7.294333e-01   p_joint 5.583333e-03

Joint ci ratio: 1.752095e-01	ci left: 6.477708e-03	ci right 7.735099e-03	k: 496	n:70000
Cons ci ratio: 9.022391e-03	ci left: 7.261783e-01	ci right 7.327741e-01	k: 51064	n:70000
KS ci ratio: 2.301101e-01	ci left: 3.653608e-03	ci right 4.616782e-03	k: 288	n:70000
GSG1L   70000 perm   13 sec   (5208 perm/sec)   p_kst 4.114286e-03   p_cons 7.294857e-01   p_joint 7.085714e-03

Joint ci ratio: 1.292048e-01	ci left: 1.063957e-02	ci right 1.212119e-02	k: 909	n:80000
Cons ci ratio: 8.470919e-03	ci left: 7.249270e-01	ci right 7.311064e-01	k: 58242	n:80000
KS ci ratio: 2.143658e-01	ci left: 3.716337e-03	ci right 4.620204e-03	k: 332	n:80000
GSG1L   80000 perm   16 sec   (5110 perm/sec)   p_kst 4.150000e-03   p_cons 7.280250e-01   p_joint 1.136250e-02

Joint ci ratio: 1.257079e-01	ci left: 1.001654e-02	ci right 1.137083e-02	k: 961	n:90000
Cons ci ratio: 8.003550e-03	ci left: 7.242550e-01	ci right 7.300859e-01	k: 65446	n:90000
KS ci ratio: 2.001375e-01	ci left: 3.819647e-03	ci right 4.679456e-03	k: 381	n:90000
GSG1L   90000 perm   18 sec   (5006 perm/sec)   p_kst 4.233333e-03   p_cons 7.271778e-01   p_joint 1.067778e-02

Joint ci ratio: 1.240936e-01	ci left: 9.266542e-03	ci right 1.050214e-02	k: 987	n:100000
Cons ci ratio: 7.584376e-03	ci left: 7.248492e-01	ci right 7.303776e-01	k: 72762	n:100000
KS ci ratio: 1.890735e-01	ci left: 3.875294e-03	ci right 4.693869e-03	k: 427	n:100000
GSG1L   100000 perm   20 sec   (4916 perm/sec)   p_kst 4.270000e-03   p_cons 7.276200e-01   p_joint 9.870000e-03

Joint ci ratio: 1.445032e-01	ci left: 6.165051e-03	ci right 7.133964e-03	k: 730	n:110000
Cons ci ratio: 7.238586e-03	ci left: 7.245848e-01	ci right 7.298578e-01	k: 79995	n:110000
KS ci ratio: 1.798530e-01	ci left: 3.913211e-03	ci right 4.695098e-03	k: 472	n:110000
GSG1L   110000 perm   23 sec   (4825 perm/sec)   p_kst 4.290909e-03   p_cons 7.272273e-01   p_joint 6.636364e-03

Joint ci ratio: 1.436565e-01	ci left: 5.723498e-03	ci right 6.617287e-03	k: 739	n:120000
Cons ci ratio: 6.924492e-03	ci left: 7.250380e-01	ci right 7.300843e-01	k: 87308	n:120000
KS ci ratio: 1.698968e-01	ci left: 4.041355e-03	ci right 4.799569e-03	k: 529	n:120000
GSG1L   120000 perm   25 sec   (4731 perm/sec)   p_kst 4.408333e-03   p_cons 7.275667e-01   p_joint 6.158333e-03

Joint ci ratio: 1.417766e-01	ci left: 5.431522e-03	ci right 6.267674e-03	k: 759	n:130000
Cons ci ratio: 6.648793e-03	ci left: 7.253793e-01	ci right 7.302259e-01	k: 94615	n:130000
KS ci ratio: 1.642645e-01	ci left: 4.003190e-03	ci right 4.726885e-03	k: 566	n:130000
GSG1L   130000 perm   28 sec   (4645 perm/sec)   p_kst 4.353846e-03   p_cons 7.278077e-01   p_joint 5.838462e-03

Joint ci ratio: 1.228999e-01	ci left: 6.770709e-03	ci right 7.664169e-03	k: 1009	n:140000
Cons ci ratio: 6.410759e-03	ci left: 7.252311e-01	ci right 7.299024e-01	k: 101860	n:140000
KS ci ratio: 1.586308e-01	ci left: 3.998274e-03	ci right 4.693929e-03	k: 607	n:140000
GSG1L   140000 perm   31 sec   (4564 perm/sec)   p_kst 4.335714e-03   p_cons 7.275714e-01   p_joint 7.207143e-03

Joint ci ratio: 1.377042e-01	ci left: 5.003189e-03	ci right 5.749459e-03	k: 805	n:150000
Cons ci ratio: 6.195957e-03	ci left: 7.251455e-01	ci right 7.296590e-01	k: 109111	n:150000
KS ci ratio: 1.525980e-01	ci left: 4.045679e-03	ci right 4.720366e-03	k: 656	n:150000
GSG1L   150000 perm   33 sec   (4489 perm/sec)   p_kst 4.373333e-03   p_cons 7.274067e-01   p_joint 5.366667e-03

Joint ci ratio: 1.330776e-01	ci left: 5.034680e-03	ci right 5.758420e-03	k: 862	n:160000
Cons ci ratio: 6.003471e-03	ci left: 7.249352e-01	ci right 7.293066e-01	k: 116340	n:160000
KS ci ratio: 1.476255e-01	ci left: 4.063515e-03	ci right 4.717145e-03	k: 701	n:160000
GSG1L   160000 perm   36 sec   (4419 perm/sec)   p_kst 4.381250e-03   p_cons 7.271250e-01   p_joint 5.387500e-03

Joint ci ratio: 1.282588e-01	ci left: 5.114083e-03	ci right 5.820591e-03	k: 928	n:170000
Cons ci ratio: 5.821137e-03	ci left: 7.252116e-01	ci right 7.294513e-01	k: 123647	n:170000
KS ci ratio: 1.423458e-01	ci left: 4.124951e-03	ci right 4.762719e-03	k: 754	n:170000
GSG1L   170000 perm   39 sec   (4351 perm/sec)   p_kst 4.435294e-03   p_cons 7.273353e-01   p_joint 5.458824e-03

Joint ci ratio: 1.249422e-01	ci left: 5.098945e-03	ci right 5.783798e-03	k: 978	n:180000
Cons ci ratio: 5.658980e-03	ci left: 7.251415e-01	ci right 7.292622e-01	k: 130897	n:180000
KS ci ratio: 1.384582e-01	ci left: 4.126285e-03	ci right 4.745398e-03	k: 797	n:180000
GSG1L   180000 perm   42 sec   (4270 perm/sec)   p_kst 4.427778e-03   p_cons 7.272056e-01   p_joint 5.433333e-03

Joint ci ratio: 1.215147e-01	ci left: 5.116234e-03	ci right 5.783202e-03	k: 1034	n:190000
Cons ci ratio: 5.509878e-03	ci left: 7.250646e-01	ci right 7.290759e-01	k: 138144	n:190000
KS ci ratio: 1.347921e-01	ci left: 4.132777e-03	ci right 4.735129e-03	k: 841	n:190000
GSG1L   190000 perm   45 sec   (4202 perm/sec)   p_kst 4.426316e-03   p_cons 7.270737e-01   p_joint 5.442105e-03

Joint ci ratio: 1.172254e-01	ci left: 5.233947e-03	ci right 5.890508e-03	k: 1111	n:200000
Cons ci ratio: 5.369941e-03	ci left: 7.251470e-01	ci right 7.290564e-01	k: 145421	n:200000
KS ci ratio: 1.301543e-01	ci left: 4.221044e-03	ci right 4.813458e-03	k: 902	n:200000
GSG1L   200000 perm   48 sec   (4137 perm/sec)   p_kst 4.510000e-03   p_cons 7.271050e-01   p_joint 5.555000e-03

Joint ci ratio: 1.142332e-01	ci left: 5.257535e-03	ci right 5.899085e-03	k: 1170	n:210000
Cons ci ratio: 5.239775e-03	ci left: 7.252513e-01	ci right 7.290662e-01	k: 152704	n:210000
KS ci ratio: 1.270950e-01	ci left: 4.222824e-03	ci right 4.800508e-03	k: 946	n:210000
GSG1L   210000 perm   52 sec   (4075 perm/sec)   p_kst 4.504762e-03   p_cons 7.271619e-01   p_joint 5.571429e-03

Joint ci ratio: 1.116875e-01	ci left: 5.257076e-03	ci right 5.883332e-03	k: 1224	n:220000
Cons ci ratio: 5.122566e-03	ci left: 7.250420e-01	ci right 7.287702e-01	k: 159920	n:220000
KS ci ratio: 1.236790e-01	ci left: 4.264237e-03	ci right 4.830757e-03	k: 999	n:220000
GSG1L   220000 perm   55 sec   (4014 perm/sec)   p_kst 4.540909e-03   p_cons 7.269091e-01   p_joint 5.563636e-03

Joint ci ratio: 1.102183e-01	ci left: 5.167990e-03	ci right 5.775010e-03	k: 1257	n:230000
Cons ci ratio: 5.006628e-03	ci left: 7.253486e-01	ci right 7.289935e-01	k: 167250	n:230000
KS ci ratio: 1.203522e-01	ci left: 4.314889e-03	ci right 4.871622e-03	k: 1055	n:230000
GSG1L   230000 perm   58 sec   (3956 perm/sec)   p_kst 4.586957e-03   p_cons 7.271739e-01   p_joint 5.465217e-03

Joint ci ratio: 1.039387e-01	ci left: 5.585323e-03	ci right 6.201702e-03	k: 1413	n:240000
Cons ci ratio: 4.895076e-03	ci left: 7.258850e-01	ci right 7.294511e-01	k: 174641	n:240000
KS ci ratio: 1.183542e-01	ci left: 4.280619e-03	ci right 4.823119e-03	k: 1091	n:240000
GSG1L   240000 perm   62 sec   (3899 perm/sec)   p_kst 4.545833e-03   p_cons 7.276708e-01   p_joint 5.887500e-03

Joint ci ratio: 1.022205e-01	ci left: 5.548954e-03	ci right 6.150589e-03	k: 1461	n:250000
Cons ci ratio: 4.797807e-03	ci left: 7.257861e-01	ci right 7.292806e-01	k: 181884	n:250000
KS ci ratio: 1.162456e-01	ci left: 4.264698e-03	ci right 4.794890e-03	k: 1131	n:250000
GSG1L   250000 perm   65 sec   (3845 perm/sec)   p_kst 4.524000e-03   p_cons 7.275360e-01   p_joint 5.844000e-03

Joint ci ratio: 1.003843e-01	ci left: 5.537961e-03	ci right 6.126983e-03	k: 1515	n:260000
Cons ci ratio: 4.701961e-03	ci left: 7.260462e-01	ci right 7.294718e-01	k: 189218	n:260000
KS ci ratio: 1.137593e-01	ci left: 4.287450e-03	ci right 4.808305e-03	k: 1181	n:260000
GSG1L   260000 perm   69 sec   (3791 perm/sec)   p_kst 4.542308e-03   p_cons 7.277615e-01   p_joint 5.826923e-03

Joint ci ratio: 9.725149e-02	ci left: 5.690479e-03	ci right 6.275757e-03	k: 1614	n:270000
Cons ci ratio: 4.612799e-03	ci left: 7.261873e-01	ci right 7.295485e-01	k: 196525	n:270000
KS ci ratio: 1.112900e-01	ci left: 4.319431e-03	ci right 4.832034e-03	k: 1234	n:270000
GSG1L   270000 perm   72 sec   (3741 perm/sec)   p_kst 4.570370e-03   p_cons 7.278704e-01   p_joint 5.977778e-03

Joint ci ratio: 9.543646e-02	ci left: 5.703343e-03	ci right 6.278383e-03	k: 1676	n:280000
Cons ci ratio: 4.528768e-03	ci left: 7.262975e-01	ci right 7.295978e-01	k: 203826	n:280000
KS ci ratio: 1.093593e-01	ci left: 4.317972e-03	ci right 4.820939e-03	k: 1278	n:280000
GSG1L   280000 perm   76 sec   (3692 perm/sec)   p_kst 4.564286e-03   p_cons 7.279500e-01   p_joint 5.985714e-03

Joint ci ratio: 8.956458e-02	ci left: 6.268053e-03	ci right 6.859114e-03	k: 1902	n:290000
Cons ci ratio: 4.453972e-03	ci left: 7.259722e-01	ci right 7.292163e-01	k: 211003	n:290000
KS ci ratio: 1.069186e-01	ci left: 4.367028e-03	ci right 4.863641e-03	k: 1337	n:290000
GSG1L   290000 perm   80 sec   (3644 perm/sec)   p_kst 4.610345e-03   p_cons 7.275966e-01   p_joint 6.558621e-03

Joint ci ratio: 8.915111e-02	ci left: 6.117756e-03	ci right 6.691842e-03	k: 1920	n:300000
Cons ci ratio: 4.376532e-03	ci left: 7.262335e-01	ci right 7.294221e-01	k: 218349	n:300000
KS ci ratio: 1.052031e-01	ci left: 4.364236e-03	ci right 4.852077e-03	k: 1381	n:300000
GSG1L   300000 perm   83 sec   (3597 perm/sec)   p_kst 4.603333e-03   p_cons 7.278300e-01   p_joint 6.400000e-03

Joint ci ratio: 8.761334e-02	ci left: 6.134918e-03	ci right 6.700175e-03	k: 1988	n:310000
Cons ci ratio: 4.305970e-03	ci left: 7.262036e-01	ci right 7.293405e-01	k: 225610	n:310000
KS ci ratio: 1.034221e-01	ci left: 4.374254e-03	ci right 4.854434e-03	k: 1429	n:310000
GSG1L   310000 perm   87 sec   (3554 perm/sec)   p_kst 4.609677e-03   p_cons 7.277742e-01   p_joint 6.412903e-03

Joint ci ratio: 9.006969e-02	ci left: 5.619243e-03	ci right 6.152265e-03	k: 1882	n:320000
Cons ci ratio: 4.239618e-03	ci left: 7.260915e-01	ci right 7.291794e-01	k: 232844	n:320000
KS ci ratio: 1.016250e-01	ci left: 4.392849e-03	ci right 4.866190e-03	k: 1480	n:320000
GSG1L   320000 perm   91 sec   (3509 perm/sec)   p_kst 4.625000e-03   p_cons 7.276375e-01   p_joint 5.881250e-03

Joint ci ratio: 8.839379e-02	ci left: 5.662281e-03	ci right 6.188876e-03	k: 1954	n:330000
Cons ci ratio: 4.175123e-03	ci left: 7.260927e-01	ci right 7.291336e-01	k: 240113	n:330000
KS ci ratio: 9.962486e-02	ci left: 4.436980e-03	ci right 4.905117e-03	k: 1540	n:330000
GSG1L   330000 perm   95 sec   (3466 perm/sec)   p_kst 4.666667e-03   p_cons 7.276152e-01   p_joint 5.921212e-03

Outputting figure to mutsig2_images.part000000000075/GSG1L.4_1024_330000_0.0046667_0.72762_0.0059212.png
                gene_name: GSG1L
               theta_stop: 0.100 
                    nperm: 330000 
                     p_ks: 0.0047 
        ci_ks_bounds_left: 0.0044 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0057 
    ci_joint_bounds_right: 0.0062 

Current progress: 50 percent done.
GSTK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
Cons ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
GSTK1   10000 perm   1 sec   (7419 perm/sec)   p_kst 6.946000e-01   p_cons 1.376000e-01   p_joint 6.308000e-01

Outputting figure to mutsig2_images.part000000000075/GSTK1.4_877_10000_0.6946_0.1376_0.6308.png
                gene_name: GSTK1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 52 percent done.
GTF2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
KS ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
GTF2H1   10000 perm   2 sec   (6559 perm/sec)   p_kst 8.461000e-01   p_cons 5.793000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF2H1.4_1703_10000_0.8461_0.5793_1.png
                gene_name: GTF2H1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
GTF2I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
Cons ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
GTF2I   10000 perm   2 sec   (5928 perm/sec)   p_kst 1.000000e-04   p_cons 8.981000e-01   p_joint 7.100000e-03

Joint ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
Cons ci ratio: 9.485289e-03	ci left: 8.908724e-01	ci right 8.994123e-01	k: 17904	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
GTF2I   20000 perm   4 sec   (5331 perm/sec)   p_kst 5.000000e-05   p_cons 8.952000e-01   p_joint 3.600000e-03

Joint ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
Cons ci ratio: 7.698890e-03	ci left: 8.927950e-01	ci right 8.997281e-01	k: 26889	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
GTF2I   30000 perm   6 sec   (5114 perm/sec)   p_kst 1.666667e-04   p_cons 8.963000e-01   p_joint 1.200000e-03

Joint ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
Cons ci ratio: 6.664591e-03	ci left: 8.933469e-01	ci right 8.993454e-01	k: 35855	n:40000
KS ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
GTF2I   40000 perm   8 sec   (4940 perm/sec)   p_kst 1.500000e-04   p_cons 8.963750e-01   p_joint 1.225000e-03

Joint ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
Cons ci ratio: 5.953046e-03	ci left: 8.939183e-01	ci right 8.992755e-01	k: 44831	n:50000
KS ci ratio: 1.481502e+00	ci left: 4.403912e-05	ci right 2.611710e-04	k: 6	n:50000
GTF2I   50000 perm   10 sec   (4822 perm/sec)   p_kst 1.200000e-04   p_cons 8.966200e-01   p_joint 1.300000e-03

Joint ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
Cons ci ratio: 5.442223e-03	ci left: 8.938836e-01	ci right 8.987780e-01	k: 53781	n:60000
KS ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
GTF2I   60000 perm   13 sec   (4724 perm/sec)   p_kst 1.500000e-04   p_cons 8.963500e-01   p_joint 1.283333e-03

Joint ci ratio: 5.016823e-01	ci left: 6.541521e-04	ci right 1.103177e-03	k: 60	n:70000
Cons ci ratio: 5.032093e-03	ci left: 8.943064e-01	ci right 8.988321e-01	k: 62761	n:70000
KS ci ratio: 1.131501e+00	ci left: 7.844767e-05	ci right 2.811545e-04	k: 11	n:70000
GTF2I   70000 perm   15 sec   (4645 perm/sec)   p_kst 1.571429e-04   p_cons 8.965857e-01   p_joint 8.571429e-04

Joint ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
Cons ci ratio: 4.712732e-03	ci left: 8.942298e-01	ci right 8.984664e-01	k: 71709	n:80000
KS ci ratio: 1.047566e+00	ci left: 8.652715e-05	ci right 2.778639e-04	k: 13	n:80000
GTF2I   80000 perm   18 sec   (4568 perm/sec)   p_kst 1.625000e-04   p_cons 8.963625e-01   p_joint 8.125000e-04

Joint ci ratio: 2.695459e-01	ci left: 2.028699e-03	ci right 2.670717e-03	k: 210	n:90000
Cons ci ratio: 4.439900e-03	ci left: 8.944916e-01	ci right 8.984828e-01	k: 80685	n:90000
KS ci ratio: 9.506446e-01	ci left: 1.016187e-04	ci right 2.886840e-04	k: 16	n:90000
GTF2I   90000 perm   20 sec   (4489 perm/sec)   p_kst 1.777778e-04   p_cons 8.965000e-01   p_joint 2.333333e-03

Joint ci ratio: 2.683064e-01	ci left: 1.844456e-03	ci right 2.425027e-03	k: 212	n:100000
Cons ci ratio: 4.213862e-03	ci left: 8.945149e-01	ci right 8.983021e-01	k: 89642	n:100000
KS ci ratio: 9.506541e-01	ci left: 9.145650e-05	ci right 2.598170e-04	k: 16	n:100000
GTF2I   100000 perm   23 sec   (4417 perm/sec)   p_kst 1.600000e-04   p_cons 8.964200e-01   p_joint 2.120000e-03

Joint ci ratio: 2.640207e-01	ci left: 1.736156e-03	ci right 2.272463e-03	k: 219	n:110000
Cons ci ratio: 4.015625e-03	ci left: 8.947032e-01	ci right 8.983122e-01	k: 98617	n:110000
KS ci ratio: 8.356594e-01	ci left: 1.181795e-04	ci right 2.918101e-04	k: 21	n:110000
GTF2I   110000 perm   25 sec   (4346 perm/sec)   p_kst 1.909091e-04   p_cons 8.965182e-01   p_joint 1.990909e-03

Joint ci ratio: 2.935972e-01	ci left: 1.265828e-03	ci right 1.708826e-03	k: 177	n:120000
Cons ci ratio: 3.709107e-03	ci left: 9.013032e-01	ci right 9.046607e-01	k: 108359	n:120000
KS ci ratio: 8.172948e-01	ci left: 1.148975e-04	ci right 2.775558e-04	k: 22	n:120000
GTF2I   120000 perm   28 sec   (4282 perm/sec)   p_kst 1.833333e-04   p_cons 9.029917e-01   p_joint 1.475000e-03

Joint ci ratio: 2.927916e-01	ci left: 1.175575e-03	ci right 1.585647e-03	k: 178	n:130000
Cons ci ratio: 3.566077e-03	ci left: 9.012466e-01	ci right 9.044739e-01	k: 117373	n:130000
KS ci ratio: 8.173011e-01	ci left: 1.060590e-04	ci right 2.562063e-04	k: 22	n:130000
GTF2I   130000 perm   31 sec   (4219 perm/sec)   p_kst 1.692308e-04   p_cons 9.028692e-01   p_joint 1.369231e-03

Joint ci ratio: 2.827066e-01	ci left: 1.177763e-03	ci right 1.571926e-03	k: 191	n:140000
Cons ci ratio: 3.436169e-03	ci left: 9.013155e-01	ci right 9.044249e-01	k: 126403	n:140000
KS ci ratio: 7.839272e-01	ci left: 1.098405e-04	ci right 2.550615e-04	k: 24	n:140000
GTF2I   140000 perm   34 sec   (4160 perm/sec)   p_kst 1.714286e-04   p_cons 9.028786e-01   p_joint 1.364286e-03

Joint ci ratio: 2.027167e-01	ci left: 2.234624e-03	ci right 2.744911e-03	k: 372	n:150000
Cons ci ratio: 3.318234e-03	ci left: 9.014442e-01	ci right 9.044469e-01	k: 135443	n:150000
KS ci ratio: 7.278529e-01	ci left: 1.240421e-04	ci right 2.697741e-04	k: 28	n:150000
GTF2I   150000 perm   37 sec   (4102 perm/sec)   p_kst 1.866667e-04   p_cons 9.029533e-01   p_joint 2.480000e-03

Joint ci ratio: 1.969924e-01	ci left: 2.225579e-03	ci right 2.717727e-03	k: 394	n:160000
Cons ci ratio: 3.212924e-03	ci left: 9.014891e-01	ci right 9.043963e-01	k: 144472	n:160000
KS ci ratio: 7.156215e-01	ci left: 1.213892e-04	ci right 2.602949e-04	k: 29	n:160000
GTF2I   160000 perm   40 sec   (4044 perm/sec)   p_kst 1.812500e-04   p_cons 9.029500e-01   p_joint 2.462500e-03

Joint ci ratio: 2.361929e-01	ci left: 1.426682e-03	ci right 1.814162e-03	k: 274	n:170000
Cons ci ratio: 3.117147e-03	ci left: 9.015241e-01	ci right 9.043445e-01	k: 153500	n:170000
KS ci ratio: 6.928974e-01	ci left: 1.239032e-04	ci right 2.588255e-04	k: 31	n:170000
GTF2I   170000 perm   43 sec   (3990 perm/sec)   p_kst 1.823529e-04   p_cons 9.029412e-01   p_joint 1.611765e-03

Joint ci ratio: 2.336643e-01	ci left: 1.378789e-03	ci right 1.748673e-03	k: 280	n:180000
Cons ci ratio: 3.033198e-03	ci left: 9.013384e-01	ci right 9.040820e-01	k: 162489	n:180000
KS ci ratio: 6.532662e-01	ci left: 1.354413e-04	ci right 2.704149e-04	k: 35	n:180000
GTF2I   180000 perm   46 sec   (3935 perm/sec)   p_kst 1.944444e-04   p_cons 9.027167e-01   p_joint 1.555556e-03

Joint ci ratio: 2.539360e-01	ci left: 1.093685e-03	ci right 1.416578e-03	k: 237	n:190000
Cons ci ratio: 2.953106e-03	ci left: 9.013268e-01	ci right 9.039977e-01	k: 171507	n:190000
KS ci ratio: 6.443796e-01	ci left: 1.327085e-04	ci right 2.623019e-04	k: 36	n:190000
GTF2I   190000 perm   49 sec   (3882 perm/sec)   p_kst 1.894737e-04   p_cons 9.026684e-01   p_joint 1.247368e-03

Joint ci ratio: 2.623556e-01	ci left: 9.688439e-04	ci right 1.265920e-03	k: 222	n:200000
Cons ci ratio: 2.875354e-03	ci left: 9.015437e-01	ci right 9.041446e-01	k: 180570	n:200000
KS ci ratio: 6.197429e-01	ci left: 1.386676e-04	ci right 2.665619e-04	k: 39	n:200000
GTF2I   200000 perm   52 sec   (3829 perm/sec)   p_kst 1.950000e-04   p_cons 9.028500e-01   p_joint 1.110000e-03

Joint ci ratio: 2.358006e-01	ci left: 1.159394e-03	ci right 1.473679e-03	k: 275	n:210000
Cons ci ratio: 2.805790e-03	ci left: 9.015921e-01	ci right 9.041301e-01	k: 189602	n:210000
KS ci ratio: 5.599333e-01	ci left: 1.685352e-04	ci right 3.030413e-04	k: 48	n:210000
GTF2I   210000 perm   56 sec   (3779 perm/sec)   p_kst 2.285714e-04   p_cons 9.028667e-01   p_joint 1.309524e-03

Joint ci ratio: 2.292478e-01	ci left: 1.175186e-03	ci right 1.483648e-03	k: 291	n:220000
Cons ci ratio: 2.740402e-03	ci left: 9.016780e-01	ci right 9.041568e-01	k: 198643	n:220000
KS ci ratio: 5.599364e-01	ci left: 1.608743e-04	ci right 2.892672e-04	k: 48	n:220000
GTF2I   220000 perm   59 sec   (3730 perm/sec)   p_kst 2.181818e-04   p_cons 9.029227e-01   p_joint 1.322727e-03

Joint ci ratio: 2.030777e-01	ci left: 1.453175e-03	ci right 1.785674e-03	k: 371	n:230000
Cons ci ratio: 2.677587e-03	ci left: 9.018750e-01	ci right 9.042974e-01	k: 207711	n:230000
KS ci ratio: 5.488477e-01	ci left: 1.613562e-04	ci right 2.865934e-04	k: 50	n:230000
GTF2I   230000 perm   62 sec   (3681 perm/sec)   p_kst 2.173913e-04   p_cons 9.030913e-01   p_joint 1.613043e-03

Joint ci ratio: 1.996210e-01	ci left: 1.444062e-03	ci right 1.768166e-03	k: 384	n:240000
Cons ci ratio: 2.619893e-03	ci left: 9.019891e-01	ci right 9.043595e-01	k: 216763	n:240000
KS ci ratio: 5.285110e-01	ci left: 1.690313e-04	ci right 2.935661e-04	k: 54	n:240000
GTF2I   240000 perm   66 sec   (3634 perm/sec)   p_kst 2.250000e-04   p_cons 9.031792e-01   p_joint 1.600000e-03

Joint ci ratio: 1.970803e-01	ci left: 1.424311e-03	ci right 1.739425e-03	k: 394	n:250000
Cons ci ratio: 2.566066e-03	ci left: 9.020745e-01	ci right 9.043962e-01	k: 225810	n:250000
KS ci ratio: 5.237723e-01	ci left: 1.657383e-04	ci right 2.863507e-04	k: 55	n:250000
GTF2I   250000 perm   70 sec   (3584 perm/sec)   p_kst 2.200000e-04   p_cons 9.032400e-01   p_joint 1.576000e-03

Joint ci ratio: 2.004169e-01	ci left: 1.322011e-03	ci right 1.620049e-03	k: 381	n:260000
Cons ci ratio: 2.520185e-03	ci left: 9.018212e-01	ci right 9.041006e-01	k: 234771	n:260000
KS ci ratio: 5.102816e-01	ci left: 1.693959e-04	ci right 2.883692e-04	k: 58	n:260000
GTF2I   260000 perm   73 sec   (3541 perm/sec)   p_kst 2.230769e-04   p_cons 9.029654e-01   p_joint 1.465385e-03

Joint ci ratio: 2.061774e-01	ci left: 1.199220e-03	ci right 1.478327e-03	k: 360	n:270000
Cons ci ratio: 2.471382e-03	ci left: 9.019631e-01	ci right 9.041986e-01	k: 243833	n:270000
KS ci ratio: 4.938150e-01	ci left: 1.760601e-04	ci right 2.943653e-04	k: 62	n:270000
GTF2I   270000 perm   77 sec   (3500 perm/sec)   p_kst 2.296296e-04   p_cons 9.030852e-01   p_joint 1.333333e-03

Joint ci ratio: 2.127759e-01	ci left: 1.081933e-03	ci right 1.342853e-03	k: 338	n:280000
Cons ci ratio: 2.425900e-03	ci left: 9.020522e-01	ci right 9.042466e-01	k: 252883	n:280000
KS ci ratio: 4.899431e-01	ci left: 1.729004e-04	ci right 2.878637e-04	k: 63	n:280000
GTF2I   280000 perm   81 sec   (3458 perm/sec)   p_kst 2.250000e-04   p_cons 9.031536e-01   p_joint 1.207143e-03

Joint ci ratio: 2.091071e-01	ci left: 1.083819e-03	ci right 1.340110e-03	k: 350	n:290000
Cons ci ratio: 2.382651e-03	ci left: 9.021493e-01	ci right 9.043047e-01	k: 261937	n:290000
KS ci ratio: 4.753133e-01	ci left: 1.790529e-04	ci right 2.933965e-04	k: 67	n:290000
GTF2I   290000 perm   85 sec   (3417 perm/sec)   p_kst 2.310345e-04   p_cons 9.032310e-01   p_joint 1.206897e-03

Joint ci ratio: 1.873821e-01	ci left: 1.320186e-03	ci right 1.596256e-03	k: 436	n:300000
Cons ci ratio: 2.341231e-03	ci left: 9.022703e-01	ci right 9.043885e-01	k: 271000	n:300000
KS ci ratio: 4.302157e-01	ci left: 2.173958e-04	ci right 3.392675e-04	k: 82	n:300000
GTF2I   300000 perm   89 sec   (3377 perm/sec)   p_kst 2.733333e-04   p_cons 9.033333e-01   p_joint 1.453333e-03

Joint ci ratio: 1.856921e-01	ci left: 1.302199e-03	ci right 1.571775e-03	k: 444	n:310000
Cons ci ratio: 2.302918e-03	ci left: 9.023061e-01	ci right 9.043896e-01	k: 280039	n:310000
KS ci ratio: 4.302176e-01	ci left: 2.103829e-04	ci right 3.283238e-04	k: 82	n:310000
GTF2I   310000 perm   93 sec   (3337 perm/sec)   p_kst 2.645161e-04   p_cons 9.033516e-01   p_joint 1.432258e-03

Joint ci ratio: 1.861156e-01	ci left: 1.255544e-03	ci right 1.516120e-03	k: 442	n:320000
Cons ci ratio: 2.266994e-03	ci left: 9.022959e-01	ci right 9.043468e-01	k: 289064	n:320000
KS ci ratio: 4.178153e-01	ci left: 2.177663e-04	ci right 3.353462e-04	k: 87	n:320000
GTF2I   320000 perm   97 sec   (3295 perm/sec)   p_kst 2.718750e-04   p_cons 9.033250e-01   p_joint 1.381250e-03

Joint ci ratio: 1.832426e-01	ci left: 1.257960e-03	ci right 1.514561e-03	k: 456	n:330000
Cons ci ratio: 2.231887e-03	ci left: 9.023505e-01	ci right 9.043697e-01	k: 298110	n:330000
KS ci ratio: 4.064272e-01	ci left: 2.247481e-04	ci right 3.418978e-04	k: 92	n:330000
GTF2I   330000 perm   101 sec   (3256 perm/sec)   p_kst 2.787879e-04   p_cons 9.033636e-01   p_joint 1.381818e-03

Joint ci ratio: 1.826470e-01	ci left: 1.229379e-03	ci right 1.479244e-03	k: 459	n:340000
Cons ci ratio: 2.199028e-03	ci left: 9.023489e-01	ci right 9.043383e-01	k: 307138	n:340000
KS ci ratio: 4.042606e-01	ci left: 2.207790e-04	ci right 3.350817e-04	k: 93	n:340000
GTF2I   340000 perm   106 sec   (3220 perm/sec)   p_kst 2.735294e-04   p_cons 9.033471e-01   p_joint 1.350000e-03

Joint ci ratio: 1.799293e-01	ci left: 1.232439e-03	ci right 1.478793e-03	k: 473	n:350000
Cons ci ratio: 2.166799e-03	ci left: 9.024108e-01	ci right 9.043711e-01	k: 316188	n:350000
KS ci ratio: 4.021284e-01	ci left: 2.170383e-04	ci right 3.286535e-04	k: 94	n:350000
GTF2I   350000 perm   110 sec   (3183 perm/sec)   p_kst 2.685714e-04   p_cons 9.033943e-01   p_joint 1.351429e-03

Joint ci ratio: 1.775117e-01	ci left: 1.232700e-03	ci right 1.475440e-03	k: 486	n:360000
Cons ci ratio: 2.135776e-03	ci left: 9.024834e-01	ci right 9.044157e-01	k: 325243	n:360000
KS ci ratio: 3.919450e-01	ci left: 2.235119e-04	ci right 3.347926e-04	k: 99	n:360000
GTF2I   360000 perm   114 sec   (3147 perm/sec)   p_kst 2.750000e-04   p_cons 9.034528e-01   p_joint 1.350000e-03

Joint ci ratio: 1.801263e-01	ci left: 1.163236e-03	ci right 1.396039e-03	k: 472	n:370000
Cons ci ratio: 2.105950e-03	ci left: 9.025603e-01	ci right 9.044658e-01	k: 334301	n:370000
KS ci ratio: 3.861948e-01	ci left: 2.247860e-04	ci right 3.346416e-04	k: 102	n:370000
GTF2I   370000 perm   119 sec   (3112 perm/sec)   p_kst 2.756757e-04   p_cons 9.035162e-01   p_joint 1.275676e-03

Joint ci ratio: 1.878418e-01	ci left: 1.037221e-03	ci right 1.254711e-03	k: 434	n:380000
Cons ci ratio: 2.078499e-03	ci left: 9.025356e-01	ci right 9.044161e-01	k: 343322	n:380000
KS ci ratio: 3.789068e-01	ci left: 2.283847e-04	ci right 3.373689e-04	k: 106	n:380000
GTF2I   380000 perm   123 sec   (3079 perm/sec)   p_kst 2.789474e-04   p_cons 9.034789e-01   p_joint 1.142105e-03

Joint ci ratio: 1.859288e-01	ci left: 1.032623e-03	ci right 1.246695e-03	k: 443	n:390000
Cons ci ratio: 2.052185e-03	ci left: 9.025046e-01	ci right 9.043612e-01	k: 352340	n:390000
KS ci ratio: 3.754149e-01	ci left: 2.271707e-04	ci right 3.343307e-04	k: 108	n:390000
GTF2I   390000 perm   128 sec   (3044 perm/sec)   p_kst 2.769231e-04   p_cons 9.034359e-01   p_joint 1.135897e-03

Joint ci ratio: 1.844813e-01	ci left: 1.023496e-03	ci right 1.233838e-03	k: 450	n:400000
Cons ci ratio: 2.026525e-03	ci left: 9.025029e-01	ci right 9.043362e-01	k: 361369	n:400000
KS ci ratio: 3.720178e-01	ci left: 2.260218e-04	ci right 3.314400e-04	k: 110	n:400000
GTF2I   400000 perm   133 sec   (3011 perm/sec)   p_kst 2.750000e-04   p_cons 9.034225e-01   p_joint 1.125000e-03

Joint ci ratio: 1.830670e-01	ci left: 1.014820e-03	ci right 1.221603e-03	k: 457	n:410000
Cons ci ratio: 2.001497e-03	ci left: 9.025284e-01	ci right 9.043390e-01	k: 370409	n:410000
KS ci ratio: 3.623520e-01	ci left: 2.337934e-04	ci right 3.393342e-04	k: 116	n:410000
GTF2I   410000 perm   138 sec   (2979 perm/sec)   p_kst 2.829268e-04   p_cons 9.034366e-01   p_joint 1.114634e-03

Joint ci ratio: 1.801401e-01	ci left: 1.024749e-03	ci right 1.229853e-03	k: 472	n:420000
Cons ci ratio: 1.978021e-03	ci left: 9.024954e-01	ci right 9.042847e-01	k: 379425	n:420000
KS ci ratio: 3.563119e-01	ci left: 2.368910e-04	ci right 3.416347e-04	k: 120	n:420000
GTF2I   420000 perm   142 sec   (2948 perm/sec)   p_kst 2.857143e-04   p_cons 9.033929e-01   p_joint 1.123810e-03

Joint ci ratio: 1.855209e-01	ci left: 9.409958e-04	ci right 1.135596e-03	k: 445	n:430000
Cons ci ratio: 1.953841e-03	ci left: 9.025996e-01	ci right 9.043671e-01	k: 388499	n:430000
KS ci ratio: 3.505641e-01	ci left: 2.398585e-04	ci right 3.438145e-04	k: 124	n:430000
GTF2I   430000 perm   147 sec   (2917 perm/sec)   p_kst 2.883721e-04   p_cons 9.034860e-01   p_joint 1.034884e-03

Joint ci ratio: 1.838796e-01	ci left: 9.369505e-04	ci right 1.128809e-03	k: 453	n:440000
Cons ci ratio: 1.932413e-03	ci left: 9.025279e-01	ci right 9.042759e-01	k: 397498	n:440000
KS ci ratio: 3.464315e-01	ci left: 2.406286e-04	ci right 3.434131e-04	k: 127	n:440000
GTF2I   440000 perm   152 sec   (2887 perm/sec)   p_kst 2.886364e-04   p_cons 9.034045e-01   p_joint 1.029545e-03

Joint ci ratio: 1.830761e-01	ci left: 9.246095e-04	ci right 1.113021e-03	k: 457	n:450000
Cons ci ratio: 1.910774e-03	ci left: 9.025421e-01	ci right 9.042705e-01	k: 406534	n:450000
KS ci ratio: 3.450869e-01	ci left: 2.373105e-04	ci right 3.381963e-04	k: 128	n:450000
GTF2I   450000 perm   158 sec   (2857 perm/sec)   p_kst 2.844444e-04   p_cons 9.034089e-01   p_joint 1.015556e-03

Joint ci ratio: 1.820859e-01	ci left: 9.148816e-04	ci right 1.100192e-03	k: 462	n:460000
Cons ci ratio: 1.889609e-03	ci left: 9.025776e-01	ci right 9.042869e-01	k: 415580	n:460000
KS ci ratio: 3.373300e-01	ci left: 2.440778e-04	ci right 3.450007e-04	k: 134	n:460000
GTF2I   460000 perm   163 sec   (2828 perm/sec)   p_kst 2.913043e-04   p_cons 9.034348e-01   p_joint 1.004348e-03

Joint ci ratio: 1.801509e-01	ci left: 9.157281e-04	ci right 1.099023e-03	k: 472	n:470000
Cons ci ratio: 1.869430e-03	ci left: 9.025839e-01	ci right 9.042749e-01	k: 424613	n:470000
KS ci ratio: 3.348590e-01	ci left: 2.427809e-04	ci right 3.422734e-04	k: 136	n:470000
GTF2I   470000 perm   168 sec   (2801 perm/sec)   p_kst 2.893617e-04   p_cons 9.034319e-01   p_joint 1.004255e-03

Joint ci ratio: 1.826832e-01	ci left: 8.707951e-04	ci right 1.047818e-03	k: 459	n:480000
Cons ci ratio: 1.850059e-03	ci left: 9.025734e-01	ci right 9.042468e-01	k: 433638	n:480000
KS ci ratio: 3.324416e-01	ci left: 2.415405e-04	ci right 3.396572e-04	k: 138	n:480000
GTF2I   480000 perm   173 sec   (2774 perm/sec)   p_kst 2.875000e-04   p_cons 9.034125e-01   p_joint 9.562500e-04

Joint ci ratio: 1.853249e-01	ci left: 8.277134e-04	ci right 9.986847e-04	k: 446	n:490000
Cons ci ratio: 1.830958e-03	ci left: 9.025940e-01	ci right 9.042502e-01	k: 442678	n:490000
KS ci ratio: 3.266183e-01	ci left: 2.459713e-04	ci right 3.437705e-04	k: 143	n:490000
GTF2I   490000 perm   178 sec   (2747 perm/sec)   p_kst 2.918367e-04   p_cons 9.034245e-01   p_joint 9.102041e-04

Joint ci ratio: 1.918830e-01	ci left: 7.539883e-04	ci right 9.158859e-04	k: 416	n:500000
Cons ci ratio: 1.812457e-03	ci left: 9.026120e-01	ci right 9.042514e-01	k: 451717	n:500000
KS ci ratio: 3.243738e-01	ci left: 2.447250e-04	ci right 3.412209e-04	k: 145	n:500000
GTF2I   500000 perm   184 sec   (2720 perm/sec)   p_kst 2.900000e-04   p_cons 9.034340e-01   p_joint 8.320000e-04

Joint ci ratio: 1.900685e-01	ci left: 7.541406e-04	ci right 9.143627e-04	k: 424	n:510000
Cons ci ratio: 1.794586e-03	ci left: 9.026214e-01	ci right 9.042446e-01	k: 460752	n:510000
KS ci ratio: 3.189575e-01	ci left: 2.489390e-04	ci right 3.451229e-04	k: 150	n:510000
GTF2I   510000 perm   189 sec   (2694 perm/sec)   p_kst 2.941176e-04   p_cons 9.034353e-01   p_joint 8.313725e-04

Joint ci ratio: 1.969122e-01	ci left: 6.865670e-04	ci right 8.383153e-04	k: 395	n:520000
Cons ci ratio: 1.777704e-03	ci left: 9.025842e-01	ci right 9.041921e-01	k: 469763	n:520000
KS ci ratio: 3.148147e-01	ci left: 2.512324e-04	ci right 3.467879e-04	k: 154	n:520000
GTF2I   520000 perm   195 sec   (2668 perm/sec)   p_kst 2.961538e-04   p_cons 9.033904e-01   p_joint 7.596154e-04

Joint ci ratio: 1.956812e-01	ci left: 6.825830e-04	ci right 8.323953e-04	k: 400	n:530000
Cons ci ratio: 1.761555e-03	ci left: 9.025220e-01	ci right 9.041151e-01	k: 478760	n:530000
KS ci ratio: 3.148156e-01	ci left: 2.464921e-04	ci right 3.402449e-04	k: 154	n:530000
GTF2I   530000 perm   201 sec   (2643 perm/sec)   p_kst 2.905660e-04   p_cons 9.033208e-01   p_joint 7.547170e-04

Joint ci ratio: 1.971643e-01	ci left: 6.593771e-04	ci right 8.053248e-04	k: 394	n:540000
Cons ci ratio: 1.745265e-03	ci left: 9.025198e-01	ci right 9.040981e-01	k: 487788	n:540000
KS ci ratio: 3.138056e-01	ci left: 2.436331e-04	ci right 3.359416e-04	k: 155	n:540000
GTF2I   540000 perm   206 sec   (2618 perm/sec)   p_kst 2.870370e-04   p_cons 9.033111e-01   p_joint 7.296296e-04

Joint ci ratio: 1.949555e-01	ci left: 6.629490e-04	ci right 8.078482e-04	k: 403	n:550000
Cons ci ratio: 1.730210e-03	ci left: 9.024374e-01	ci right 9.040020e-01	k: 496772	n:550000
KS ci ratio: 3.079386e-01	ci left: 2.492618e-04	ci right 3.415908e-04	k: 161	n:550000
GTF2I   550000 perm   212 sec   (2594 perm/sec)   p_kst 2.927273e-04   p_cons 9.032218e-01   p_joint 7.327273e-04

Joint ci ratio: 2.112871e-01	ci left: 5.494047e-04	ci right 6.808510e-04	k: 343	n:560000
Cons ci ratio: 1.715693e-03	ci left: 9.023419e-01	ci right 9.038932e-01	k: 505747	n:560000
KS ci ratio: 3.060555e-01	ci left: 2.481070e-04	ci right 3.393367e-04	k: 163	n:560000
GTF2I   560000 perm   218 sec   (2569 perm/sec)   p_kst 2.910714e-04   p_cons 9.031196e-01   p_joint 6.125000e-04

Joint ci ratio: 2.100697e-01	ci left: 5.464132e-04	ci right 6.762936e-04	k: 347	n:570000
Cons ci ratio: 1.700546e-03	ci left: 9.023520e-01	ci right 9.038895e-01	k: 514780	n:570000
KS ci ratio: 3.032940e-01	ci left: 2.486151e-04	ci right 3.390476e-04	k: 166	n:570000
GTF2I   570000 perm   224 sec   (2546 perm/sec)   p_kst 2.912281e-04   p_cons 9.031228e-01   p_joint 6.087719e-04

Joint ci ratio: 2.071143e-01	ci left: 5.533333e-04	ci right 6.827738e-04	k: 357	n:580000
Cons ci ratio: 1.687204e-03	ci left: 9.022147e-01	ci right 9.037399e-01	k: 523728	n:580000
KS ci ratio: 3.006060e-01	ci left: 2.491092e-04	ci right 3.387650e-04	k: 169	n:580000
GTF2I   580000 perm   230 sec   (2523 perm/sec)   p_kst 2.913793e-04   p_cons 9.029793e-01   p_joint 6.155172e-04

Joint ci ratio: 2.062525e-01	ci left: 5.487763e-04	ci right 6.765491e-04	k: 360	n:590000
Cons ci ratio: 1.672534e-03	ci left: 9.022539e-01	ci right 9.037659e-01	k: 532777	n:590000
KS ci ratio: 2.988534e-01	ci left: 2.480220e-04	ci right 3.366673e-04	k: 171	n:590000
GTF2I   590000 perm   236 sec   (2501 perm/sec)   p_kst 2.898305e-04   p_cons 9.030119e-01   p_joint 6.101695e-04

Joint ci ratio: 1.676840e-01	ci left: 8.336947e-04	ci right 9.878564e-04	k: 545	n:600000
Cons ci ratio: 1.658792e-03	ci left: 9.022333e-01	ci right 9.037328e-01	k: 541791	n:600000
KS ci ratio: 2.946015e-01	ci left: 2.516015e-04	ci right 3.400079e-04	k: 176	n:600000
GTF2I   600000 perm   242 sec   (2479 perm/sec)   p_kst 2.933333e-04   p_cons 9.029850e-01   p_joint 9.083333e-04

Joint ci ratio: 1.663189e-01	ci left: 8.341651e-04	ci right 9.870323e-04	k: 554	n:610000
Cons ci ratio: 1.645090e-03	ci left: 9.022447e-01	ci right 9.037318e-01	k: 550824	n:610000
KS ci ratio: 2.921362e-01	ci left: 2.520330e-04	ci right 3.397129e-04	k: 179	n:610000
GTF2I   610000 perm   248 sec   (2457 perm/sec)   p_kst 2.934426e-04   p_cons 9.029902e-01   p_joint 9.081967e-04

Joint ci ratio: 1.648403e-01	ci left: 8.361715e-04	ci right 9.879091e-04	k: 564	n:620000
Cons ci ratio: 1.631768e-03	ci left: 9.022509e-01	ci right 9.037260e-01	k: 559854	n:620000
KS ci ratio: 2.905268e-01	ci left: 2.509580e-04	ci right 3.376945e-04	k: 181	n:620000
GTF2I   620000 perm   255 sec   (2435 perm/sec)   p_kst 2.919355e-04   p_cons 9.029903e-01   p_joint 9.096774e-04

Joint ci ratio: 1.639724e-01	ci left: 8.320308e-04	ci right 9.821435e-04	k: 570	n:630000
Cons ci ratio: 1.618661e-03	ci left: 9.022681e-01	ci right 9.037313e-01	k: 568891	n:630000
KS ci ratio: 2.889438e-01	ci left: 2.499185e-04	ci right 3.357390e-04	k: 183	n:630000
GTF2I   630000 perm   261 sec   (2413 perm/sec)   p_kst 2.904762e-04   p_cons 9.030016e-01   p_joint 9.047619e-04

Joint ci ratio: 1.628358e-01	ci left: 8.310191e-04	ci right 9.798083e-04	k: 578	n:640000
Cons ci ratio: 1.605923e-03	ci left: 9.022786e-01	ci right 9.037303e-01	k: 577924	n:640000
KS ci ratio: 2.873864e-01	ci left: 2.489126e-04	ci right 3.338434e-04	k: 185	n:640000
GTF2I   640000 perm   267 sec   (2393 perm/sec)   p_kst 2.890625e-04   p_cons 9.030063e-01   p_joint 9.031250e-04

Joint ci ratio: 1.624163e-01	ci left: 8.226615e-04	ci right 9.695378e-04	k: 581	n:650000
Cons ci ratio: 1.593243e-03	ci left: 9.023150e-01	ci right 9.037553e-01	k: 586974	n:650000
KS ci ratio: 2.858538e-01	ci left: 2.479390e-04	ci right 3.320048e-04	k: 187	n:650000
GTF2I   650000 perm   274 sec   (2372 perm/sec)   p_kst 2.876923e-04   p_cons 9.030369e-01   p_joint 8.938462e-04

Joint ci ratio: 1.614486e-01	ci left: 8.203731e-04	ci right 9.658834e-04	k: 588	n:660000
Cons ci ratio: 1.581008e-03	ci left: 9.023336e-01	ci right 9.037628e-01	k: 596013	n:660000
KS ci ratio: 2.828603e-01	ci left: 2.498108e-04	ci right 3.334661e-04	k: 191	n:660000
GTF2I   660000 perm   280 sec   (2353 perm/sec)   p_kst 2.893939e-04   p_cons 9.030500e-01   p_joint 8.909091e-04

Joint ci ratio: 1.607681e-01	ci left: 8.152903e-04	ci right 9.592308e-04	k: 593	n:670000
Cons ci ratio: 1.569760e-03	ci left: 9.022724e-01	ci right 9.036913e-01	k: 604999	n:670000
KS ci ratio: 2.806760e-01	ci left: 2.502435e-04	ci right 3.332821e-04	k: 194	n:670000
GTF2I   670000 perm   287 sec   (2333 perm/sec)   p_kst 2.895522e-04   p_cons 9.029836e-01   p_joint 8.850746e-04

Joint ci ratio: 1.370609e-01	ci left: 1.119111e-03	ci right 1.285185e-03	k: 816	n:680000
Cons ci ratio: 1.558578e-03	ci left: 9.022321e-01	ci right 9.036409e-01	k: 613998	n:680000
KS ci ratio: 2.785415e-01	ci left: 2.506659e-04	ci right 3.331012e-04	k: 197	n:680000
GTF2I   680000 perm   294 sec   (2313 perm/sec)   p_kst 2.897059e-04   p_cons 9.029382e-01   p_joint 1.200000e-03

Joint ci ratio: 1.366441e-01	ci left: 1.109890e-03	ci right 1.274054e-03	k: 821	n:690000
Cons ci ratio: 1.547107e-03	ci left: 9.022527e-01	ci right 9.036511e-01	k: 623038	n:690000
KS ci ratio: 2.737438e-01	ci left: 2.564758e-04	ci right 3.391191e-04	k: 204	n:690000
GTF2I   690000 perm   301 sec   (2294 perm/sec)   p_kst 2.956522e-04   p_cons 9.029536e-01   p_joint 1.189855e-03

Joint ci ratio: 1.364792e-01	ci left: 1.096793e-03	ci right 1.258809e-03	k: 823	n:700000
Cons ci ratio: 1.535973e-03	ci left: 9.022627e-01	ci right 9.036511e-01	k: 632071	n:700000
KS ci ratio: 2.724184e-01	ci left: 2.554734e-04	ci right 3.373268e-04	k: 206	n:700000
GTF2I   700000 perm   308 sec   (2275 perm/sec)   p_kst 2.942857e-04   p_cons 9.029586e-01   p_joint 1.175714e-03

Joint ci ratio: 1.380834e-01	ci left: 1.055503e-03	ci right 1.213402e-03	k: 804	n:710000
Cons ci ratio: 1.525150e-03	ci left: 9.022640e-01	ci right 9.036425e-01	k: 641098	n:710000
KS ci ratio: 2.685535e-01	ci left: 2.597529e-04	ci right 3.415980e-04	k: 212	n:710000
GTF2I   710000 perm   315 sec   (2257 perm/sec)   p_kst 2.985915e-04   p_cons 9.029549e-01   p_joint 1.132394e-03

Joint ci ratio: 1.377423e-01	ci left: 1.046206e-03	ci right 1.202296e-03	k: 808	n:720000
Cons ci ratio: 1.514324e-03	ci left: 9.022918e-01	ci right 9.036605e-01	k: 650144	n:720000
KS ci ratio: 2.666820e-01	ci left: 2.600324e-04	ci right 3.412991e-04	k: 215	n:720000
GTF2I   720000 perm   322 sec   (2239 perm/sec)   p_kst 2.986111e-04   p_cons 9.029778e-01   p_joint 1.122222e-03

Joint ci ratio: 1.368153e-01	ci left: 1.046426e-03	ci right 1.201412e-03	k: 819	n:730000
Cons ci ratio: 1.503996e-03	ci left: 9.022872e-01	ci right 9.036466e-01	k: 659167	n:730000
KS ci ratio: 2.660672e-01	ci left: 2.577487e-04	ci right 3.380850e-04	k: 216	n:730000
GTF2I   730000 perm   329 sec   (2221 perm/sec)   p_kst 2.958904e-04   p_cons 9.029685e-01   p_joint 1.121918e-03

Joint ci ratio: 1.393928e-01	ci left: 9.931430e-04	ci right 1.143239e-03	k: 789	n:740000
Cons ci ratio: 1.493542e-03	ci left: 9.023221e-01	ci right 9.036721e-01	k: 668219	n:740000
KS ci ratio: 2.654566e-01	ci left: 2.555268e-04	ci right 3.349575e-04	k: 217	n:740000
GTF2I   740000 perm   336 sec   (2204 perm/sec)   p_kst 2.932432e-04   p_cons 9.029986e-01   p_joint 1.066216e-03

Joint ci ratio: 1.393055e-01	ci left: 9.811876e-04	ci right 1.129376e-03	k: 790	n:750000
Cons ci ratio: 1.483393e-03	ci left: 9.023454e-01	ci right 9.036862e-01	k: 677263	n:750000
KS ci ratio: 2.648502e-01	ci left: 2.533645e-04	ci right 3.319132e-04	k: 218	n:750000
GTF2I   750000 perm   343 sec   (2187 perm/sec)   p_kst 2.906667e-04   p_cons 9.030173e-01   p_joint 1.053333e-03

Joint ci ratio: 1.390428e-01	ci left: 9.720868e-04	ci right 1.118601e-03	k: 793	n:760000
Cons ci ratio: 1.473559e-03	ci left: 9.023549e-01	ci right 9.036868e-01	k: 686297	n:760000
KS ci ratio: 2.612945e-01	ci left: 2.574050e-04	ci right 3.359600e-04	k: 224	n:760000
GTF2I   760000 perm   350 sec   (2170 perm/sec)   p_kst 2.947368e-04   p_cons 9.030224e-01   p_joint 1.043421e-03

Joint ci ratio: 1.383478e-01	ci left: 9.694913e-04	ci right 1.114824e-03	k: 801	n:770000
Cons ci ratio: 1.464005e-03	ci left: 9.023537e-01	ci right 9.036770e-01	k: 695323	n:770000
KS ci ratio: 2.601410e-01	ci left: 2.564897e-04	ci right 3.343637e-04	k: 226	n:770000
GTF2I   770000 perm   358 sec   (2154 perm/sec)   p_kst 2.935065e-04   p_cons 9.030169e-01   p_joint 1.040260e-03

Joint ci ratio: 1.379190e-01	ci left: 9.632504e-04	ci right 1.107163e-03	k: 806	n:780000
Cons ci ratio: 1.454464e-03	ci left: 9.023732e-01	ci right 9.036879e-01	k: 704365	n:780000
KS ci ratio: 2.601415e-01	ci left: 2.532013e-04	ci right 3.300770e-04	k: 226	n:780000
GTF2I   780000 perm   365 sec   (2137 perm/sec)   p_kst 2.897436e-04   p_cons 9.030321e-01   p_joint 1.033333e-03

Joint ci ratio: 1.368212e-01	ci left: 9.669477e-04	ci right 1.110169e-03	k: 819	n:790000
Cons ci ratio: 1.445274e-03	ci left: 9.023719e-01	ci right 9.036783e-01	k: 713391	n:790000
KS ci ratio: 2.578792e-01	ci left: 2.547309e-04	ci right 3.312901e-04	k: 230	n:790000
GTF2I   790000 perm   373 sec   (2121 perm/sec)   p_kst 2.911392e-04   p_cons 9.030266e-01   p_joint 1.036709e-03

Joint ci ratio: 1.375799e-01	ci left: 9.439962e-04	ci right 1.084657e-03	k: 810	n:800000
Cons ci ratio: 1.436369e-03	ci left: 9.023569e-01	ci right 9.036552e-01	k: 722406	n:800000
KS ci ratio: 2.567702e-01	ci left: 2.538855e-04	ci right 3.298099e-04	k: 232	n:800000
GTF2I   800000 perm   380 sec   (2105 perm/sec)   p_kst 2.900000e-04   p_cons 9.030075e-01   p_joint 1.012500e-03

Joint ci ratio: 1.374960e-01	ci left: 9.335337e-04	ci right 1.072544e-03	k: 811	n:810000
Cons ci ratio: 1.427506e-03	ci left: 9.023571e-01	ci right 9.036474e-01	k: 731433	n:810000
KS ci ratio: 2.545940e-01	ci left: 2.553730e-04	ci right 3.309922e-04	k: 236	n:810000
GTF2I   810000 perm   388 sec   (2089 perm/sec)   p_kst 2.913580e-04   p_cons 9.030037e-01   p_joint 1.001235e-03

Joint ci ratio: 1.369074e-01	ci left: 9.303926e-04	ci right 1.068293e-03	k: 818	n:820000
Cons ci ratio: 1.418746e-03	ci left: 9.023647e-01	ci right 9.036471e-01	k: 740466	n:820000
KS ci ratio: 2.535266e-01	ci left: 2.545424e-04	ci right 3.295497e-04	k: 238	n:820000
GTF2I   820000 perm   395 sec   (2074 perm/sec)   p_kst 2.902439e-04   p_cons 9.030073e-01   p_joint 9.975610e-04

Joint ci ratio: 1.366579e-01	ci left: 9.226735e-04	ci right 1.059161e-03	k: 821	n:830000
Cons ci ratio: 1.410077e-03	ci left: 9.023806e-01	ci right 9.036551e-01	k: 749506	n:830000
KS ci ratio: 2.529982e-01	ci left: 2.526039e-04	ci right 3.268604e-04	k: 239	n:830000
GTF2I   830000 perm   403 sec   (2060 perm/sec)   p_kst 2.879518e-04   p_cons 9.030193e-01   p_joint 9.891566e-04

Joint ci ratio: 1.356710e-01	ci left: 9.254885e-04	ci right 1.061324e-03	k: 833	n:840000
Cons ci ratio: 1.401841e-03	ci left: 9.023615e-01	ci right 9.036285e-01	k: 758517	n:840000
KS ci ratio: 2.519507e-01	ci left: 2.518270e-04	ci right 3.255005e-04	k: 241	n:840000
GTF2I   840000 perm   411 sec   (2044 perm/sec)   p_kst 2.869048e-04   p_cons 9.029964e-01   p_joint 9.916667e-04

Joint ci ratio: 1.259217e-01	ci left: 1.067101e-03	ci right 1.211627e-03	k: 967	n:850000
Cons ci ratio: 1.393159e-03	ci left: 9.024172e-01	ci right 9.036765e-01	k: 767591	n:850000
KS ci ratio: 2.504034e-01	ci left: 2.521716e-04	ci right 3.254222e-04	k: 244	n:850000
GTF2I   850000 perm   419 sec   (2029 perm/sec)   p_kst 2.870588e-04   p_cons 9.030482e-01   p_joint 1.137647e-03

Joint ci ratio: 1.253406e-01	ci left: 1.064829e-03	ci right 1.208333e-03	k: 976	n:860000
Cons ci ratio: 1.384699e-03	ci left: 9.024635e-01	ci right 9.037152e-01	k: 776658	n:860000
KS ci ratio: 2.493877e-01	ci left: 2.514193e-04	ci right 3.241092e-04	k: 246	n:860000
GTF2I   860000 perm   427 sec   (2015 perm/sec)   p_kst 2.860465e-04   p_cons 9.030907e-01   p_joint 1.134884e-03

Joint ci ratio: 1.246409e-01	ci left: 1.064838e-03	ci right 1.207482e-03	k: 987	n:870000
Cons ci ratio: 1.376600e-03	ci left: 9.024822e-01	ci right 9.037266e-01	k: 785702	n:870000
KS ci ratio: 2.478868e-01	ci left: 2.517629e-04	ci right 3.240465e-04	k: 249	n:870000
GTF2I   870000 perm   435 sec   (2000 perm/sec)   p_kst 2.862069e-04   p_cons 9.031057e-01   p_joint 1.134483e-03

Joint ci ratio: 1.238908e-01	ci left: 1.065950e-03	ci right 1.207821e-03	k: 999	n:880000
Cons ci ratio: 1.368925e-03	ci left: 9.024641e-01	ci right 9.037014e-01	k: 794714	n:880000
KS ci ratio: 2.459270e-01	ci left: 2.531662e-04	ci right 3.251902e-04	k: 253	n:880000
GTF2I   880000 perm   443 sec   (1986 perm/sec)   p_kst 2.875000e-04   p_cons 9.030841e-01   p_joint 1.135227e-03

Joint ci ratio: 1.240780e-01	ci left: 1.050706e-03	ci right 1.190775e-03	k: 996	n:890000
Cons ci ratio: 1.361561e-03	ci left: 9.024227e-01	ci right 9.036533e-01	k: 803705	n:890000
KS ci ratio: 2.454446e-01	ci left: 2.513760e-04	ci right 3.227291e-04	k: 254	n:890000
GTF2I   890000 perm   451 sec   (1972 perm/sec)   p_kst 2.853933e-04   p_cons 9.030393e-01   p_joint 1.119101e-03

Joint ci ratio: 1.242661e-01	ci left: 1.035801e-03	ci right 1.174108e-03	k: 993	n:900000
Cons ci ratio: 1.354159e-03	ci left: 9.024023e-01	ci right 9.036262e-01	k: 812714	n:900000
KS ci ratio: 2.435418e-01	ci left: 2.527551e-04	ci right 3.238594e-04	k: 258	n:900000
GTF2I   900000 perm   460 sec   (1958 perm/sec)   p_kst 2.866667e-04   p_cons 9.030156e-01   p_joint 1.103333e-03

Joint ci ratio: 1.237692e-01	ci left: 1.032937e-03	ci right 1.170270e-03	k: 1001	n:910000
Cons ci ratio: 1.346336e-03	ci left: 9.024529e-01	ci right 9.036698e-01	k: 821787	n:910000
KS ci ratio: 2.430732e-01	ci left: 2.510095e-04	ci right 3.214663e-04	k: 259	n:910000
GTF2I   910000 perm   468 sec   (1945 perm/sec)   p_kst 2.846154e-04   p_cons 9.030626e-01   p_joint 1.100000e-03

Joint ci ratio: 1.234007e-01	ci left: 1.028030e-03	ci right 1.164273e-03	k: 1007	n:920000
Cons ci ratio: 1.339029e-03	ci left: 9.024523e-01	ci right 9.036626e-01	k: 830814	n:920000
KS ci ratio: 2.421438e-01	ci left: 2.503229e-04	ci right 3.202779e-04	k: 261	n:920000
GTF2I   920000 perm   476 sec   (1931 perm/sec)   p_kst 2.836957e-04   p_cons 9.030587e-01   p_joint 1.094565e-03

Joint ci ratio: 1.228536e-01	ci left: 1.026355e-03	ci right 1.161729e-03	k: 1016	n:930000
Cons ci ratio: 1.332077e-03	ci left: 9.024204e-01	ci right 9.036244e-01	k: 839812	n:930000
KS ci ratio: 2.416832e-01	ci left: 2.486413e-04	ci right 3.179744e-04	k: 262	n:930000
GTF2I   930000 perm   485 sec   (1917 perm/sec)   p_kst 2.817204e-04   p_cons 9.030237e-01   p_joint 1.092473e-03

Joint ci ratio: 1.261244e-01	ci left: 9.618376e-04	ci right 1.092332e-03	k: 964	n:940000
Cons ci ratio: 1.325345e-03	ci left: 9.023743e-01	ci right 9.035721e-01	k: 848796	n:940000
KS ci ratio: 2.530025e-01	ci left: 2.230434e-04	ci right 2.886114e-04	k: 239	n:940000
GTF2I   940000 perm   494 sec   (1903 perm/sec)   p_kst 2.542553e-04   p_cons 9.029745e-01   p_joint 1.025532e-03

Joint ci ratio: 1.262561e-01	ci left: 9.496738e-04	ci right 1.078663e-03	k: 962	n:950000
Cons ci ratio: 1.317961e-03	ci left: 9.024295e-01	ci right 9.036207e-01	k: 857875	n:950000
KS ci ratio: 2.524772e-01	ci left: 2.216816e-04	ci right 2.866926e-04	k: 240	n:950000
GTF2I   950000 perm   502 sec   (1891 perm/sec)   p_kst 2.526316e-04   p_cons 9.030263e-01   p_joint 1.012632e-03

Joint ci ratio: 1.265862e-01	ci left: 9.347373e-04	ci right 1.062054e-03	k: 957	n:960000
Cons ci ratio: 1.310823e-03	ci left: 9.024668e-01	ci right 9.036516e-01	k: 866938	n:960000
KS ci ratio: 2.519552e-01	ci left: 2.203482e-04	ci right 2.848136e-04	k: 241	n:960000
GTF2I   960000 perm   511 sec   (1879 perm/sec)   p_kst 2.510417e-04   p_cons 9.030604e-01   p_joint 9.968750e-04

Joint ci ratio: 1.388836e-01	ci left: 7.636195e-04	ci right 8.785703e-04	k: 795	n:970000
Cons ci ratio: 1.351216e-03	ci left: 8.960513e-01	ci right 8.972639e-01	k: 869759	n:970000
KS ci ratio: 2.504079e-01	ci left: 2.209747e-04	ci right 2.851645e-04	k: 244	n:970000
GTF2I   970000 perm   520 sec   (1866 perm/sec)   p_kst 2.515464e-04   p_cons 8.966588e-01   p_joint 8.195876e-04

Joint ci ratio: 1.427030e-01	ci left: 7.144783e-04	ci right 8.252414e-04	k: 753	n:980000
Cons ci ratio: 1.344701e-03	ci left: 8.959996e-01	ci right 8.972062e-01	k: 878672	n:980000
KS ci ratio: 2.493921e-01	ci left: 2.206328e-04	ci right 2.844230e-04	k: 246	n:980000
GTF2I   980000 perm   529 sec   (1853 perm/sec)   p_kst 2.510204e-04   p_cons 8.966041e-01   p_joint 7.683673e-04

Joint ci ratio: 1.427035e-01	ci left: 7.072612e-04	ci right 8.169059e-04	k: 753	n:990000
Cons ci ratio: 1.337878e-03	ci left: 8.960046e-01	ci right 8.972052e-01	k: 887640	n:990000
KS ci ratio: 2.478911e-01	ci left: 2.212457e-04	ci right 2.847688e-04	k: 249	n:990000
GTF2I   990000 perm   538 sec   (1841 perm/sec)   p_kst 2.515152e-04   p_cons 8.966061e-01   p_joint 7.606061e-04

Joint ci ratio: 1.417664e-01	ci left: 7.098328e-04	ci right 8.190923e-04	k: 763	n:1000000
Cons ci ratio: 1.331280e-03	ci left: 8.959926e-01	ci right 8.971871e-01	k: 896591	n:1000000
KS ci ratio: 2.454485e-01	ci left: 2.237243e-04	ci right 2.872295e-04	k: 254	n:1000000
GTF2I   1000000 perm   547 sec   (1829 perm/sec)   p_kst 2.540000e-04   p_cons 8.965910e-01   p_joint 7.630000e-04

Joint ci ratio: 1.409386e-01	ci left: 7.114005e-04	ci right 8.202083e-04	k: 772	n:1010000
Cons ci ratio: 1.324912e-03	ci left: 8.959619e-01	ci right 8.971507e-01	k: 905523	n:1010000
KS ci ratio: 2.440172e-01	ci left: 2.242973e-04	ci right 2.875377e-04	k: 257	n:1010000
GTF2I   1010000 perm   556 sec   (1816 perm/sec)   p_kst 2.544554e-04   p_cons 8.965574e-01   p_joint 7.643564e-04

Joint ci ratio: 1.403949e-01	ci left: 7.101013e-04	ci right 8.182563e-04	k: 778	n:1020000
Cons ci ratio: 1.318322e-03	ci left: 8.959760e-01	ci right 8.971590e-01	k: 914500	n:1020000
KS ci ratio: 2.430770e-01	ci left: 2.239395e-04	ci right 2.867989e-04	k: 259	n:1020000
GTF2I   1020000 perm   565 sec   (1804 perm/sec)   p_kst 2.539216e-04   p_cons 8.965686e-01   p_joint 7.627451e-04

Joint ci ratio: 1.397683e-01	ci left: 7.097651e-04	ci right 8.173462e-04	k: 785	n:1030000
Cons ci ratio: 1.311987e-03	ci left: 8.959676e-01	ci right 8.971448e-01	k: 923454	n:1030000
KS ci ratio: 2.421475e-01	ci left: 2.235890e-04	ci right 2.860740e-04	k: 261	n:1030000
GTF2I   1030000 perm   575 sec   (1793 perm/sec)   p_kst 2.533981e-04   p_cons 8.965573e-01   p_joint 7.621359e-04

Joint ci ratio: 1.391501e-01	ci left: 7.094363e-04	ci right 8.164526e-04	k: 792	n:1040000
Cons ci ratio: 1.305851e-03	ci left: 8.959438e-01	ci right 8.971155e-01	k: 932392	n:1040000
KS ci ratio: 2.412286e-01	ci left: 2.232457e-04	ci right 2.853626e-04	k: 263	n:1040000
GTF2I   1040000 perm   584 sec   (1781 perm/sec)   p_kst 2.528846e-04   p_cons 8.965308e-01   p_joint 7.615385e-04

Joint ci ratio: 1.504980e-01	ci left: 5.971158e-04	ci right 6.951966e-04	k: 677	n:1050000
Cons ci ratio: 1.299520e-03	ci left: 8.959607e-01	ci right 8.971267e-01	k: 941372	n:1050000
KS ci ratio: 2.403201e-01	ci left: 2.229094e-04	ci right 2.846644e-04	k: 265	n:1050000
GTF2I   1050000 perm   593 sec   (1770 perm/sec)   p_kst 2.523810e-04   p_cons 8.965448e-01   p_joint 6.447619e-04

Joint ci ratio: 1.497270e-01	ci left: 5.978384e-04	ci right 6.954898e-04	k: 684	n:1060000
Cons ci ratio: 1.293411e-03	ci left: 8.959583e-01	ci right 8.971188e-01	k: 950332	n:1060000
KS ci ratio: 2.389762e-01	ci left: 2.234668e-04	ci right 2.849786e-04	k: 268	n:1060000
GTF2I   1060000 perm   602 sec   (1760 perm/sec)   p_kst 2.528302e-04   p_cons 8.965396e-01   p_joint 6.452830e-04

Joint ci ratio: 1.486457e-01	ci left: 6.012481e-04	ci right 6.986842e-04	k: 694	n:1070000
Cons ci ratio: 1.287278e-03	ci left: 8.959719e-01	ci right 8.971269e-01	k: 959309	n:1070000
KS ci ratio: 2.367854e-01	ci left: 2.257727e-04	ci right 2.872661e-04	k: 273	n:1070000
GTF2I   1070000 perm   612 sec   (1749 perm/sec)   p_kst 2.551402e-04   p_cons 8.965505e-01   p_joint 6.485981e-04

Joint ci ratio: 1.504994e-01	ci left: 5.805288e-04	ci right 6.758861e-04	k: 677	n:1080000
Cons ci ratio: 1.281282e-03	ci left: 8.959778e-01	ci right 8.971275e-01	k: 968278	n:1080000
KS ci ratio: 2.359260e-01	ci left: 2.254244e-04	ci right 2.865676e-04	k: 275	n:1080000
GTF2I   1080000 perm   622 sec   (1737 perm/sec)   p_kst 2.546296e-04   p_cons 8.965537e-01   p_joint 6.268519e-04

Joint ci ratio: 1.500575e-01	ci left: 5.787346e-04	ci right 6.734929e-04	k: 681	n:1090000
Cons ci ratio: 1.275653e-03	ci left: 8.959423e-01	ci right 8.970868e-01	k: 977202	n:1090000
KS ci ratio: 2.350759e-01	ci left: 2.250829e-04	ci right 2.858815e-04	k: 277	n:1090000
GTF2I   1090000 perm   631 sec   (1727 perm/sec)   p_kst 2.541284e-04   p_cons 8.965156e-01   p_joint 6.247706e-04

Joint ci ratio: 1.510586e-01	ci left: 5.655995e-04	ci right 6.588808e-04	k: 672	n:1100000
Cons ci ratio: 1.269736e-03	ci left: 8.959602e-01	ci right 8.970995e-01	k: 986184	n:1100000
KS ci ratio: 2.342349e-01	ci left: 2.247480e-04	ci right 2.852074e-04	k: 279	n:1100000
GTF2I   1100000 perm   641 sec   (1716 perm/sec)   p_kst 2.536364e-04   p_cons 8.965309e-01   p_joint 6.109091e-04

Joint ci ratio: 1.508349e-01	ci left: 5.622377e-04	ci right 6.548148e-04	k: 674	n:1110000
Cons ci ratio: 1.263907e-03	ci left: 8.959770e-01	ci right 8.971110e-01	k: 995165	n:1110000
KS ci ratio: 2.342352e-01	ci left: 2.227232e-04	ci right 2.826380e-04	k: 279	n:1110000
GTF2I   1110000 perm   651 sec   (1706 perm/sec)   p_kst 2.513514e-04   p_cons 8.965450e-01   p_joint 6.072072e-04

Joint ci ratio: 1.501690e-01	ci left: 5.623731e-04	ci right 6.545270e-04	k: 680	n:1120000
Cons ci ratio: 1.258303e-03	ci left: 8.959720e-01	ci right 8.971010e-01	k: 1004122	n:1120000
KS ci ratio: 2.329903e-01	ci left: 2.232564e-04	ci right 2.829495e-04	k: 282	n:1120000
GTF2I   1120000 perm   661 sec   (1695 perm/sec)   p_kst 2.517857e-04   p_cons 8.965375e-01   p_joint 6.071429e-04

Joint ci ratio: 1.512849e-01	ci left: 5.488802e-04	ci right 6.395520e-04	k: 670	n:1130000
Cons ci ratio: 1.253012e-03	ci left: 8.959316e-01	ci right 8.970558e-01	k: 1013039	n:1130000
KS ci ratio: 2.321714e-01	ci left: 2.229475e-04	ci right 2.823184e-04	k: 284	n:1130000
GTF2I   1130000 perm   671 sec   (1685 perm/sec)   p_kst 2.513274e-04   p_cons 8.964947e-01   p_joint 5.929204e-04

Joint ci ratio: 1.506130e-01	ci left: 5.491299e-04	ci right 6.394037e-04	k: 676	n:1140000
Cons ci ratio: 1.247487e-03	ci left: 8.959367e-01	ci right 8.970560e-01	k: 1022007	n:1140000
KS ci ratio: 2.309589e-01	ci left: 2.234707e-04	ci right 2.826259e-04	k: 287	n:1140000
GTF2I   1140000 perm   681 sec   (1675 perm/sec)   p_kst 2.517544e-04   p_cons 8.964974e-01   p_joint 5.929825e-04

Joint ci ratio: 1.499500e-01	ci left: 5.493760e-04	ci right 6.392571e-04	k: 682	n:1150000
Cons ci ratio: 1.241981e-03	ci left: 8.959497e-01	ci right 8.970640e-01	k: 1030984	n:1150000
KS ci ratio: 2.301612e-01	ci left: 2.231662e-04	ci right 2.820077e-04	k: 289	n:1150000
GTF2I   1150000 perm   691 sec   (1665 perm/sec)   p_kst 2.513043e-04   p_cons 8.965078e-01   p_joint 5.930435e-04

Joint ci ratio: 1.497312e-01	ci left: 5.462995e-04	ci right 6.355351e-04	k: 684	n:1160000
Cons ci ratio: 1.236553e-03	ci left: 8.959615e-01	ci right 8.970710e-01	k: 1039960	n:1160000
KS ci ratio: 2.301615e-01	ci left: 2.212423e-04	ci right 2.795766e-04	k: 289	n:1160000
GTF2I   1160000 perm   701 sec   (1654 perm/sec)   p_kst 2.491379e-04   p_cons 8.965172e-01   p_joint 5.896552e-04

Joint ci ratio: 1.492961e-01	ci left: 5.449211e-04	ci right 6.336498e-04	k: 688	n:1170000
Cons ci ratio: 1.230986e-03	ci left: 8.960049e-01	ci right 8.971094e-01	k: 1048973	n:1170000
KS ci ratio: 2.297658e-01	ci left: 2.201568e-04	ci right 2.780909e-04	k: 290	n:1170000
GTF2I   1170000 perm   712 sec   (1644 perm/sec)   p_kst 2.478632e-04   p_cons 8.965581e-01   p_joint 5.880342e-04

Joint ci ratio: 1.484367e-01	ci left: 5.468303e-04	ci right 6.353119e-04	k: 696	n:1180000
Cons ci ratio: 1.225835e-03	ci left: 8.959957e-01	ci right 8.970956e-01	k: 1057925	n:1180000
KS ci ratio: 2.285905e-01	ci left: 2.206875e-04	ci right 2.784223e-04	k: 293	n:1180000
GTF2I   1180000 perm   722 sec   (1634 perm/sec)   p_kst 2.483051e-04   p_cons 8.965466e-01   p_joint 5.898305e-04

Joint ci ratio: 1.490805e-01	ci left: 5.373806e-04	ci right 6.247438e-04	k: 690	n:1190000
Cons ci ratio: 1.220676e-03	ci left: 8.959976e-01	ci right 8.970929e-01	k: 1066890	n:1190000
KS ci ratio: 2.270510e-01	ci left: 2.220025e-04	ci right 2.796355e-04	k: 297	n:1190000
GTF2I   1190000 perm   732 sec   (1625 perm/sec)   p_kst 2.495798e-04   p_cons 8.965462e-01   p_joint 5.798319e-04

Joint ci ratio: 1.486509e-01	ci left: 5.361115e-04	ci right 6.229951e-04	k: 694	n:1200000
Cons ci ratio: 1.215636e-03	ci left: 8.959912e-01	ci right 8.970819e-01	k: 1075845	n:1200000
KS ci ratio: 2.266711e-01	ci left: 2.209385e-04	ci right 2.781858e-04	k: 298	n:1200000
GTF2I   1200000 perm   743 sec   (1616 perm/sec)   p_kst 2.483333e-04   p_cons 8.965375e-01   p_joint 5.783333e-04

Joint ci ratio: 1.484378e-01	ci left: 5.332723e-04	ci right 6.195607e-04	k: 696	n:1210000
Cons ci ratio: 1.210556e-03	ci left: 8.960006e-01	ci right 8.970867e-01	k: 1084819	n:1210000
KS ci ratio: 2.266713e-01	ci left: 2.191125e-04	ci right 2.758868e-04	k: 298	n:1210000
GTF2I   1210000 perm   753 sec   (1606 perm/sec)   p_kst 2.462810e-04   p_cons 8.965446e-01   p_joint 5.752066e-04

Joint ci ratio: 1.480138e-01	ci left: 5.320582e-04	ci right 6.178826e-04	k: 700	n:1220000
Cons ci ratio: 1.205688e-03	ci left: 8.959869e-01	ci right 8.970686e-01	k: 1093765	n:1220000
KS ci ratio: 2.259171e-01	ci left: 2.188629e-04	ci right 2.753575e-04	k: 300	n:1220000
GTF2I   1220000 perm   764 sec   (1598 perm/sec)   p_kst 2.459016e-04   p_cons 8.965287e-01   p_joint 5.737705e-04

Joint ci ratio: 1.478033e-01	ci left: 5.292984e-04	ci right 6.145453e-04	k: 702	n:1230000
Cons ci ratio: 1.200663e-03	ci left: 8.960068e-01	ci right 8.970840e-01	k: 1102752	n:1230000
KS ci ratio: 2.259173e-01	ci left: 2.170835e-04	ci right 2.731189e-04	k: 300	n:1230000
GTF2I   1230000 perm   774 sec   (1589 perm/sec)   p_kst 2.439024e-04   p_cons 8.965463e-01   p_joint 5.707317e-04

Joint ci ratio: 1.491903e-01	ci left: 5.149352e-04	ci right 5.987166e-04	k: 689	n:1240000
Cons ci ratio: 1.195705e-03	ci left: 8.960256e-01	ci right 8.970984e-01	k: 1111738	n:1240000
KS ci ratio: 2.240637e-01	ci left: 2.191379e-04	ci right 2.751754e-04	k: 305	n:1240000
GTF2I   1240000 perm   785 sec   (1579 perm/sec)   p_kst 2.459677e-04   p_cons 8.965629e-01   p_joint 5.556452e-04

Joint ci ratio: 1.489747e-01	ci left: 5.123560e-04	ci right 5.955866e-04	k: 691	n:1250000
Cons ci ratio: 1.190957e-03	ci left: 8.960208e-01	ci right 8.970893e-01	k: 1120695	n:1250000
KS ci ratio: 2.236987e-01	ci left: 2.181399e-04	ci right 2.738188e-04	k: 306	n:1250000
GTF2I   1250000 perm   796 sec   (1570 perm/sec)   p_kst 2.448000e-04   p_cons 8.965560e-01   p_joint 5.528000e-04

Joint ci ratio: 1.423379e-01	ci left: 5.587636e-04	ci right 6.451461e-04	k: 757	n:1260000
Cons ci ratio: 1.186138e-03	ci left: 8.960360e-01	ci right 8.971002e-01	k: 1129677	n:1260000
KS ci ratio: 2.218987e-01	ci left: 2.201555e-04	ci right 2.758349e-04	k: 311	n:1260000
GTF2I   1260000 perm   807 sec   (1562 perm/sec)   p_kst 2.468254e-04   p_cons 8.965690e-01   p_joint 6.007937e-04

Joint ci ratio: 1.418708e-01	ci left: 5.581609e-04	ci right 6.441431e-04	k: 762	n:1270000
Cons ci ratio: 1.181718e-03	ci left: 8.959973e-01	ci right 8.970575e-01	k: 1138591	n:1270000
KS ci ratio: 2.218989e-01	ci left: 2.184220e-04	ci right 2.736630e-04	k: 311	n:1270000
GTF2I   1270000 perm   818 sec   (1553 perm/sec)   p_kst 2.448819e-04   p_cons 8.965283e-01   p_joint 6.000000e-04

Joint ci ratio: 1.415929e-01	ci left: 5.560608e-04	ci right 6.415376e-04	k: 765	n:1280000
Cons ci ratio: 1.177074e-03	ci left: 8.960023e-01	ci right 8.970584e-01	k: 1147560	n:1280000
KS ci ratio: 2.218992e-01	ci left: 2.167155e-04	ci right 2.715251e-04	k: 311	n:1280000
GTF2I   1280000 perm   828 sec   (1545 perm/sec)   p_kst 2.429687e-04   p_cons 8.965313e-01   p_joint 5.976562e-04

Joint ci ratio: 1.419646e-01	ci left: 5.487594e-04	ci right 6.333540e-04	k: 761	n:1290000
Cons ci ratio: 1.172652e-03	ci left: 8.959808e-01	ci right 8.970329e-01	k: 1156495	n:1290000
KS ci ratio: 2.211914e-01	ci left: 2.164999e-04	ci right 2.710565e-04	k: 313	n:1290000
GTF2I   1290000 perm   839 sec   (1537 perm/sec)   p_kst 2.426357e-04   p_cons 8.965078e-01   p_joint 5.899225e-04

Joint ci ratio: 1.415012e-01	ci left: 5.482479e-04	ci right 6.324645e-04	k: 766	n:1300000
Cons ci ratio: 1.168128e-03	ci left: 8.959836e-01	ci right 8.970316e-01	k: 1165461	n:1300000
KS ci ratio: 2.204903e-01	ci left: 2.162879e-04	ci right 2.705949e-04	k: 315	n:1300000
GTF2I   1300000 perm   851 sec   (1528 perm/sec)   p_kst 2.423077e-04   p_cons 8.965085e-01   p_joint 5.892308e-04

Joint ci ratio: 1.406781e-01	ci left: 5.506906e-04	ci right 6.347490e-04	k: 775	n:1310000
Cons ci ratio: 1.163681e-03	ci left: 8.959825e-01	ci right 8.970265e-01	k: 1174422	n:1310000
KS ci ratio: 2.191078e-01	ci left: 2.175222e-04	ci right 2.717505e-04	k: 319	n:1310000
GTF2I   1310000 perm   862 sec   (1520 perm/sec)   p_kst 2.435115e-04   p_cons 8.965053e-01   p_joint 5.916031e-04

Joint ci ratio: 1.396912e-01	ci left: 5.545598e-04	ci right 6.385656e-04	k: 786	n:1320000
Cons ci ratio: 1.159421e-03	ci left: 8.959594e-01	ci right 8.969995e-01	k: 1183354	n:1320000
KS ci ratio: 2.164188e-01	ci left: 2.216044e-04	ci right 2.760824e-04	k: 327	n:1320000
GTF2I   1320000 perm   873 sec   (1512 perm/sec)   p_kst 2.477273e-04   p_cons 8.964803e-01   p_joint 5.954545e-04

Joint ci ratio: 1.388991e-01	ci left: 5.569213e-04	ci right 6.407669e-04	k: 795	n:1330000
Cons ci ratio: 1.155016e-03	ci left: 8.959675e-01	ci right 8.970037e-01	k: 1192327	n:1330000
KS ci ratio: 2.144658e-01	ci left: 2.242061e-04	ci right 2.787609e-04	k: 333	n:1330000
GTF2I   1330000 perm   884 sec   (1504 perm/sec)   p_kst 2.503759e-04   p_cons 8.964865e-01   p_joint 5.977444e-04

Joint ci ratio: 1.420595e-01	ci left: 5.275631e-04	ci right 6.089491e-04	k: 760	n:1340000
Cons ci ratio: 1.150933e-03	ci left: 8.959314e-01	ci right 8.969639e-01	k: 1201241	n:1340000
KS ci ratio: 2.138266e-01	ci left: 2.239455e-04	ci right 2.782530e-04	k: 335	n:1340000
GTF2I   1340000 perm   896 sec   (1496 perm/sec)   p_kst 2.500000e-04   p_cons 8.964485e-01   p_joint 5.671642e-04

Joint ci ratio: 1.410435e-01	ci left: 5.315149e-04	ci right 6.128748e-04	k: 771	n:1350000
Cons ci ratio: 1.146564e-03	ci left: 8.959493e-01	ci right 8.969779e-01	k: 1210227	n:1350000
KS ci ratio: 2.119424e-01	ci left: 2.264941e-04	ci right 2.808729e-04	k: 341	n:1350000
GTF2I   1350000 perm   907 sec   (1488 perm/sec)   p_kst 2.525926e-04   p_cons 8.964644e-01   p_joint 5.711111e-04

Joint ci ratio: 1.406796e-01	ci left: 5.304442e-04	ci right 6.114132e-04	k: 775	n:1360000
Cons ci ratio: 1.142529e-03	ci left: 8.959205e-01	ci right 8.969454e-01	k: 1219150	n:1360000
KS ci ratio: 2.116333e-01	ci left: 2.255250e-04	ci right 2.795819e-04	k: 342	n:1360000
GTF2I   1360000 perm   919 sec   (1480 perm/sec)   p_kst 2.514706e-04   p_cons 8.964338e-01   p_joint 5.698529e-04

Joint ci ratio: 1.404086e-01	ci left: 5.286851e-04	ci right 6.092171e-04	k: 778	n:1370000
Cons ci ratio: 1.138264e-03	ci left: 8.959368e-01	ci right 8.969579e-01	k: 1228134	n:1370000
KS ci ratio: 2.110191e-01	ci left: 2.252614e-04	ci right 2.790782e-04	k: 344	n:1370000
GTF2I   1370000 perm   930 sec   (1473 perm/sec)   p_kst 2.510949e-04   p_cons 8.964482e-01   p_joint 5.678832e-04

Joint ci ratio: 1.395157e-01	ci left: 5.318467e-04	ci right 6.123023e-04	k: 788	n:1380000
Cons ci ratio: 1.134369e-03	ci left: 8.958998e-01	ci right 8.969174e-01	k: 1237045	n:1380000
KS ci ratio: 2.098062e-01	ci left: 2.263750e-04	ci right 2.801069e-04	k: 348	n:1380000
GTF2I   1380000 perm   942 sec   (1465 perm/sec)   p_kst 2.521739e-04   p_cons 8.964094e-01   p_joint 5.710145e-04

Joint ci ratio: 1.314305e-01	ci left: 5.975281e-04	ci right 6.822728e-04	k: 888	n:1390000
Cons ci ratio: 1.130321e-03	ci left: 8.958951e-01	ci right 8.969090e-01	k: 1246000	n:1390000
KS ci ratio: 2.086140e-01	ci left: 2.274733e-04	ci right 2.811200e-04	k: 352	n:1390000
GTF2I   1390000 perm   953 sec   (1458 perm/sec)   p_kst 2.532374e-04   p_cons 8.964029e-01   p_joint 6.388489e-04

Joint ci ratio: 1.310625e-01	ci left: 5.967142e-04	ci right 6.810881e-04	k: 893	n:1400000
Cons ci ratio: 1.126242e-03	ci left: 8.959026e-01	ci right 8.969129e-01	k: 1254972	n:1400000
KS ci ratio: 2.080255e-01	ci left: 2.272025e-04	ci right 2.806150e-04	k: 354	n:1400000
GTF2I   1400000 perm   965 sec   (1451 perm/sec)   p_kst 2.528571e-04   p_cons 8.964086e-01   p_joint 6.378571e-04

Joint ci ratio: 1.306249e-01	ci left: 5.965982e-04	ci right 6.806522e-04	k: 899	n:1410000
Cons ci ratio: 1.122289e-03	ci left: 8.958965e-01	ci right 8.969032e-01	k: 1263925	n:1410000
KS ci ratio: 2.080257e-01	ci left: 2.255912e-04	ci right 2.786248e-04	k: 354	n:1410000
GTF2I   1410000 perm   976 sec   (1444 perm/sec)   p_kst 2.510638e-04   p_cons 8.964007e-01   p_joint 6.375887e-04

Joint ci ratio: 1.302636e-01	ci left: 5.958031e-04	ci right 6.794949e-04	k: 904	n:1420000
Cons ci ratio: 1.118038e-03	ci left: 8.959470e-01	ci right 8.969500e-01	k: 1272958	n:1420000
KS ci ratio: 2.077335e-01	ci left: 2.246700e-04	ci right 2.774035e-04	k: 355	n:1420000
GTF2I   1420000 perm   988 sec   (1437 perm/sec)   p_kst 2.500000e-04   p_cons 8.964493e-01   p_joint 6.366197e-04

Joint ci ratio: 1.308439e-01	ci left: 5.862247e-04	ci right 6.689664e-04	k: 896	n:1430000
Cons ci ratio: 1.114258e-03	ci left: 8.959260e-01	ci right 8.969255e-01	k: 1281890	n:1430000
KS ci ratio: 2.065761e-01	ci left: 2.257510e-04	ci right 2.784057e-04	k: 359	n:1430000
GTF2I   1430000 perm   1000 sec   (1430 perm/sec)   p_kst 2.510490e-04   p_cons 8.964266e-01   p_joint 6.265734e-04

Joint ci ratio: 1.312106e-01	ci left: 5.787952e-04	ci right 6.607350e-04	k: 891	n:1440000
Cons ci ratio: 1.110450e-03	ci left: 8.959164e-01	ci right 8.969125e-01	k: 1290838	n:1440000
KS ci ratio: 2.062899e-01	ci left: 2.248419e-04	ci right 2.772026e-04	k: 360	n:1440000
GTF2I   1440000 perm   1012 sec   (1423 perm/sec)   p_kst 2.500000e-04   p_cons 8.964153e-01   p_joint 6.187500e-04

Joint ci ratio: 1.306987e-01	ci left: 5.794729e-04	ci right 6.611638e-04	k: 898	n:1450000
Cons ci ratio: 1.106619e-03	ci left: 8.959174e-01	ci right 8.969100e-01	k: 1299801	n:1450000
KS ci ratio: 2.057208e-01	ci left: 2.245994e-04	ci right 2.767413e-04	k: 362	n:1450000
GTF2I   1450000 perm   1024 sec   (1416 perm/sec)   p_kst 2.496552e-04   p_cons 8.964145e-01   p_joint 6.193103e-04

Joint ci ratio: 1.322538e-01	ci left: 5.615931e-04	ci right 6.417793e-04	k: 877	n:1460000
Cons ci ratio: 1.103034e-03	ci left: 8.958833e-01	ci right 8.968727e-01	k: 1308713	n:1460000
KS ci ratio: 2.057210e-01	ci left: 2.230610e-04	ci right 2.748458e-04	k: 362	n:1460000
GTF2I   1460000 perm   1037 sec   (1409 perm/sec)   p_kst 2.479452e-04   p_cons 8.963788e-01   p_joint 6.006849e-04

Joint ci ratio: 1.318788e-01	ci left: 5.610617e-04	ci right 6.409272e-04	k: 882	n:1470000
Cons ci ratio: 1.099243e-03	ci left: 8.958906e-01	ci right 8.968766e-01	k: 1317685	n:1470000
KS ci ratio: 2.054383e-01	ci left: 2.221888e-04	ci right 2.736914e-04	k: 363	n:1470000
GTF2I   1470000 perm   1049 sec   (1402 perm/sec)   p_kst 2.469388e-04   p_cons 8.963844e-01   p_joint 6.000000e-04

Joint ci ratio: 1.157512e-01	ci left: 7.294964e-04	ci right 8.197729e-04	k: 1145	n:1480000
Cons ci ratio: 1.095507e-03	ci left: 8.958951e-01	ci right 8.968777e-01	k: 1326653	n:1480000
KS ci ratio: 2.040415e-01	ci left: 2.238928e-04	ci right 2.753934e-04	k: 368	n:1480000
GTF2I   1480000 perm   1061 sec   (1395 perm/sec)   p_kst 2.486486e-04   p_cons 8.963872e-01   p_joint 7.736486e-04

Joint ci ratio: 1.154996e-01	ci left: 7.278591e-04	ci right 8.177239e-04	k: 1150	n:1490000
Cons ci ratio: 1.091930e-03	ci left: 8.958786e-01	ci right 8.968581e-01	k: 1335590	n:1490000
KS ci ratio: 2.034909e-01	ci left: 2.236639e-04	ci right 2.749558e-04	k: 370	n:1490000
GTF2I   1490000 perm   1073 sec   (1388 perm/sec)   p_kst 2.483221e-04   p_cons 8.963691e-01   p_joint 7.718121e-04

Joint ci ratio: 1.163631e-01	ci left: 7.120017e-04	ci right 8.006109e-04	k: 1133	n:1500000
Cons ci ratio: 1.088373e-03	ci left: 8.958651e-01	ci right 8.968413e-01	k: 1344531	n:1500000
KS ci ratio: 2.032173e-01	ci left: 2.228055e-04	ci right 2.738234e-04	k: 371	n:1500000
GTF2I   1500000 perm   1086 sec   (1381 perm/sec)   p_kst 2.473333e-04   p_cons 8.963540e-01   p_joint 7.553333e-04

Joint ci ratio: 1.268745e-01	ci left: 5.916984e-04	ci right 6.724885e-04	k: 953	n:1510000
Cons ci ratio: 1.084653e-03	ci left: 8.958856e-01	ci right 8.968585e-01	k: 1353523	n:1510000
KS ci ratio: 2.024027e-01	ci left: 2.232159e-04	ci right 2.740975e-04	k: 374	n:1510000
GTF2I   1510000 perm   1099 sec   (1374 perm/sec)   p_kst 2.476821e-04   p_cons 8.963728e-01   p_joint 6.311258e-04

Joint ci ratio: 1.263458e-01	ci left: 5.929021e-04	ci right 6.734940e-04	k: 961	n:1520000
Cons ci ratio: 1.080929e-03	ci left: 8.959131e-01	ci right 8.968827e-01	k: 1362526	n:1520000
KS ci ratio: 2.013317e-01	ci left: 2.242459e-04	ci right 2.750586e-04	k: 378	n:1520000
GTF2I   1520000 perm   1112 sec   (1367 perm/sec)   p_kst 2.486842e-04   p_cons 8.963987e-01   p_joint 6.322368e-04

Joint ci ratio: 1.260188e-01	ci left: 5.921917e-04	ci right 6.724632e-04	k: 966	n:1530000
Cons ci ratio: 1.077337e-03	ci left: 8.959239e-01	ci right 8.968903e-01	k: 1371504	n:1530000
KS ci ratio: 2.010667e-01	ci left: 2.234009e-04	ci right 2.739473e-04	k: 379	n:1530000
GTF2I   1530000 perm   1124 sec   (1361 perm/sec)   p_kst 2.477124e-04   p_cons 8.964078e-01   p_joint 6.313725e-04

Joint ci ratio: 1.254363e-01	ci left: 5.940067e-04	ci right 6.741244e-04	k: 975	n:1540000
Cons ci ratio: 1.074052e-03	ci left: 8.958877e-01	ci right 8.968511e-01	k: 1380410	n:1540000
KS ci ratio: 2.005397e-01	ci left: 2.231837e-04	ci right 2.735324e-04	k: 381	n:1540000
GTF2I   1540000 perm   1137 sec   (1354 perm/sec)   p_kst 2.474026e-04   p_cons 8.963701e-01   p_joint 6.331169e-04

Joint ci ratio: 1.246089e-01	ci left: 5.982993e-04	ci right 6.784243e-04	k: 988	n:1550000
Cons ci ratio: 1.070528e-03	ci left: 8.958985e-01	ci right 8.968587e-01	k: 1389388	n:1550000
KS ci ratio: 1.984719e-01	ci left: 2.266473e-04	ci right 2.771863e-04	k: 389	n:1550000
GTF2I   1550000 perm   1150 sec   (1348 perm/sec)   p_kst 2.509677e-04   p_cons 8.963794e-01   p_joint 6.374194e-04

Joint ci ratio: 1.241703e-01	ci left: 5.988116e-04	ci right 6.787022e-04	k: 995	n:1560000
Cons ci ratio: 1.067043e-03	ci left: 8.959085e-01	ci right 8.968656e-01	k: 1398365	n:1560000
KS ci ratio: 1.979650e-01	ci left: 2.264129e-04	ci right 2.767551e-04	k: 391	n:1560000
GTF2I   1560000 perm   1163 sec   (1341 perm/sec)   p_kst 2.506410e-04   p_cons 8.963878e-01   p_joint 6.378205e-04

Joint ci ratio: 1.241705e-01	ci left: 5.949974e-04	ci right 6.743793e-04	k: 995	n:1570000
Cons ci ratio: 1.063632e-03	ci left: 8.959114e-01	ci right 8.968655e-01	k: 1407331	n:1570000
KS ci ratio: 1.974619e-01	ci left: 2.261816e-04	ci right 2.763292e-04	k: 393	n:1570000
GTF2I   1570000 perm   1177 sec   (1334 perm/sec)   p_kst 2.503185e-04   p_cons 8.963892e-01   p_joint 6.337580e-04

Joint ci ratio: 1.239841e-01	ci left: 5.930714e-04	ci right 6.720688e-04	k: 998	n:1580000
Cons ci ratio: 1.060430e-03	ci left: 8.958832e-01	ci right 8.968343e-01	k: 1416248	n:1580000
KS ci ratio: 1.972119e-01	ci left: 2.253517e-04	ci right 2.752444e-04	k: 394	n:1580000
GTF2I   1580000 perm   1190 sec   (1328 perm/sec)   p_kst 2.493671e-04   p_cons 8.963595e-01   p_joint 6.316456e-04

Joint ci ratio: 1.242959e-01	ci left: 5.862943e-04	ci right 6.645998e-04	k: 993	n:1590000
Cons ci ratio: 1.057031e-03	ci left: 8.958950e-01	ci right 8.968431e-01	k: 1425228	n:1590000
KS ci ratio: 1.964672e-01	ci left: 2.257282e-04	ci right 2.754930e-04	k: 397	n:1590000
GTF2I   1590000 perm   1203 sec   (1322 perm/sec)   p_kst 2.496855e-04   p_cons 8.963698e-01   p_joint 6.245283e-04

Joint ci ratio: 1.239225e-01	ci left: 5.862635e-04	ci right 6.643124e-04	k: 999	n:1600000
Cons ci ratio: 1.053828e-03	ci left: 8.958779e-01	ci right 8.968231e-01	k: 1434162	n:1600000
KS ci ratio: 1.957309e-01	ci left: 2.261003e-04	ci right 2.757381e-04	k: 400	n:1600000
GTF2I   1600000 perm   1216 sec   (1316 perm/sec)   p_kst 2.500000e-04   p_cons 8.963513e-01   p_joint 6.243750e-04

Joint ci ratio: 1.235524e-01	ci left: 5.862335e-04	ci right 6.640283e-04	k: 1005	n:1610000
Cons ci ratio: 1.050622e-03	ci left: 8.958666e-01	ci right 8.968090e-01	k: 1443105	n:1610000
KS ci ratio: 1.950028e-01	ci left: 2.264682e-04	ci right 2.759798e-04	k: 403	n:1610000
GTF2I   1610000 perm   1229 sec   (1310 perm/sec)   p_kst 2.503106e-04   p_cons 8.963385e-01   p_joint 6.242236e-04

Joint ci ratio: 1.232466e-01	ci left: 5.856059e-04	ci right 6.631110e-04	k: 1010	n:1620000
Cons ci ratio: 1.047390e-03	ci left: 8.958654e-01	ci right 8.968048e-01	k: 1452064	n:1620000
KS ci ratio: 1.942827e-01	ci left: 2.268318e-04	ci right 2.762182e-04	k: 406	n:1620000
GTF2I   1620000 perm   1242 sec   (1304 perm/sec)   p_kst 2.506173e-04   p_cons 8.963358e-01   p_joint 6.234568e-04

Joint ci ratio: 1.227617e-01	ci left: 5.867702e-04	ci right 6.641017e-04	k: 1018	n:1630000
Cons ci ratio: 1.044232e-03	ci left: 8.958562e-01	ci right 8.967927e-01	k: 1461010	n:1630000
KS ci ratio: 1.938071e-01	ci left: 2.266076e-04	ci right 2.758102e-04	k: 408	n:1630000
GTF2I   1630000 perm   1256 sec   (1298 perm/sec)   p_kst 2.503067e-04   p_cons 8.963252e-01   p_joint 6.245399e-04

Joint ci ratio: 1.223422e-01	ci left: 5.873298e-04	ci right 6.644514e-04	k: 1025	n:1640000
Cons ci ratio: 1.041044e-03	ci left: 8.958574e-01	ci right 8.967912e-01	k: 1469973	n:1640000
KS ci ratio: 1.928662e-01	ci left: 2.275469e-04	ci right 2.766853e-04	k: 412	n:1640000
GTF2I   1640000 perm   1269 sec   (1292 perm/sec)   p_kst 2.512195e-04   p_cons 8.963250e-01   p_joint 6.250000e-04

Joint ci ratio: 1.220452e-01	ci left: 5.867079e-04	ci right 6.635473e-04	k: 1030	n:1650000
Cons ci ratio: 1.037825e-03	ci left: 8.958696e-01	ci right 8.968005e-01	k: 1478954	n:1650000
KS ci ratio: 1.926333e-01	ci left: 2.267446e-04	ci right 2.756437e-04	k: 413	n:1650000
GTF2I   1650000 perm   1282 sec   (1287 perm/sec)   p_kst 2.503030e-04   p_cons 8.963358e-01   p_joint 6.242424e-04

Joint ci ratio: 1.216330e-01	ci left: 5.872619e-04	ci right 6.638953e-04	k: 1037	n:1660000
Cons ci ratio: 1.034755e-03	ci left: 8.958600e-01	ci right 8.967880e-01	k: 1487899	n:1660000
KS ci ratio: 1.921697e-01	ci left: 2.265254e-04	ci right 2.752460e-04	k: 415	n:1660000
GTF2I   1660000 perm   1296 sec   (1281 perm/sec)   p_kst 2.500000e-04   p_cons 8.963247e-01   p_joint 6.246988e-04

Joint ci ratio: 1.190778e-01	ci left: 6.098807e-04	ci right 6.876763e-04	k: 1082	n:1670000
Cons ci ratio: 1.031673e-03	ci left: 8.958576e-01	ci right 8.967829e-01	k: 1496856	n:1670000
KS ci ratio: 1.914804e-01	ci left: 2.268791e-04	ci right 2.754804e-04	k: 418	n:1670000
GTF2I   1670000 perm   1310 sec   (1275 perm/sec)   p_kst 2.502994e-04   p_cons 8.963210e-01   p_joint 6.479042e-04

Joint ci ratio: 1.188586e-01	ci left: 6.085605e-04	ci right 6.860348e-04	k: 1086	n:1680000
Cons ci ratio: 1.028596e-03	ci left: 8.958595e-01	ci right 8.967820e-01	k: 1505820	n:1680000
KS ci ratio: 1.912524e-01	ci left: 2.260954e-04	ci right 2.744644e-04	k: 419	n:1680000
GTF2I   1680000 perm   1325 sec   (1268 perm/sec)   p_kst 2.494048e-04   p_cons 8.963214e-01   p_joint 6.464286e-04

Joint ci ratio: 1.203640e-01	ci left: 5.894609e-04	ci right 6.655217e-04	k: 1059	n:1690000
Cons ci ratio: 1.025431e-03	ci left: 8.958821e-01	ci right 8.968018e-01	k: 1514819	n:1690000
KS ci ratio: 1.910253e-01	ci left: 2.253209e-04	ci right 2.734603e-04	k: 420	n:1690000
GTF2I   1690000 perm   1339 sec   (1262 perm/sec)   p_kst 2.485207e-04   p_cons 8.963426e-01   p_joint 6.266272e-04

Joint ci ratio: 1.199123e-01	ci left: 5.905580e-04	ci right 6.664541e-04	k: 1067	n:1700000
Cons ci ratio: 1.022403e-03	ci left: 8.958849e-01	ci right 8.968019e-01	k: 1523785	n:1700000
KS ci ratio: 1.901241e-01	ci left: 2.262362e-04	ci right 2.743168e-04	k: 424	n:1700000
GTF2I   1700000 perm   1353 sec   (1257 perm/sec)   p_kst 2.494118e-04   p_cons 8.963441e-01   p_joint 6.276471e-04

Joint ci ratio: 1.192994e-01	ci left: 5.933447e-04	ci right 6.691818e-04	k: 1078	n:1710000
Cons ci ratio: 1.019436e-03	ci left: 8.958813e-01	ci right 8.967957e-01	k: 1532740	n:1710000
KS ci ratio: 1.890154e-01	ci left: 2.276984e-04	ci right 2.757752e-04	k: 429	n:1710000
GTF2I   1710000 perm   1366 sec   (1251 perm/sec)   p_kst 2.508772e-04   p_cons 8.963392e-01   p_joint 6.304094e-04

Joint ci ratio: 1.204785e-01	ci left: 5.780516e-04	ci right 6.527162e-04	k: 1057	n:1720000
Cons ci ratio: 1.016482e-03	ci left: 8.958801e-01	ci right 8.967918e-01	k: 1541699	n:1720000
KS ci ratio: 1.887960e-01	ci left: 2.269285e-04	ci right 2.747807e-04	k: 430	n:1720000
GTF2I   1720000 perm   1380 sec   (1246 perm/sec)   p_kst 2.500000e-04   p_cons 8.963366e-01   p_joint 6.145349e-04

Joint ci ratio: 1.200255e-01	ci left: 5.791955e-04	ci right 6.537066e-04	k: 1065	n:1730000
Cons ci ratio: 1.013629e-03	ci left: 8.958650e-01	ci right 8.967741e-01	k: 1550634	n:1730000
KS ci ratio: 1.883595e-01	ci left: 2.267183e-04	ci right 2.744029e-04	k: 432	n:1730000
GTF2I   1730000 perm   1395 sec   (1240 perm/sec)   p_kst 2.497110e-04   p_cons 8.963202e-01   p_joint 6.156069e-04

Joint ci ratio: 1.204220e-01	ci left: 5.719646e-04	ci right 6.458059e-04	k: 1058	n:1740000
Cons ci ratio: 1.010754e-03	ci left: 8.958587e-01	ci right 8.967652e-01	k: 1559584	n:1740000
KS ci ratio: 1.877104e-01	ci left: 2.270583e-04	ci right 2.746311e-04	k: 435	n:1740000
GTF2I   1740000 perm   1409 sec   (1235 perm/sec)   p_kst 2.500000e-04   p_cons 8.963126e-01   p_joint 6.080460e-04

Joint ci ratio: 1.200259e-01	ci left: 5.725760e-04	ci right 6.462358e-04	k: 1065	n:1750000
Cons ci ratio: 1.007853e-03	ci left: 8.958617e-01	ci right 8.967656e-01	k: 1568550	n:1750000
KS ci ratio: 1.870679e-01	ci left: 2.273947e-04	ci right 2.748564e-04	k: 438	n:1750000
GTF2I   1750000 perm   1423 sec   (1229 perm/sec)   p_kst 2.502857e-04   p_cons 8.963143e-01   p_joint 6.085714e-04

Joint ci ratio: 1.028663e-01	ci left: 7.820153e-04	ci right 8.673684e-04	k: 1450	n:1760000
Cons ci ratio: 1.004980e-03	ci left: 8.958640e-01	ci right 8.967654e-01	k: 1577515	n:1760000
KS ci ratio: 1.866432e-01	ci left: 2.271858e-04	ci right 2.744842e-04	k: 440	n:1760000
GTF2I   1760000 perm   1438 sec   (1224 perm/sec)   p_kst 2.500000e-04   p_cons 8.963153e-01   p_joint 8.238636e-04

Joint ci ratio: 1.025839e-01	ci left: 7.820007e-04	ci right 8.671038e-04	k: 1458	n:1770000
Cons ci ratio: 1.002192e-03	ci left: 8.958550e-01	ci right 8.967538e-01	k: 1586460	n:1770000
KS ci ratio: 1.860116e-01	ci left: 2.275182e-04	ci right 2.747073e-04	k: 443	n:1770000
GTF2I   1770000 perm   1452 sec   (1219 perm/sec)   p_kst 2.502825e-04   p_cons 8.963051e-01   p_joint 8.237288e-04

Joint ci ratio: 1.023387e-01	ci left: 7.814393e-04	ci right 8.662658e-04	k: 1465	n:1780000
Cons ci ratio: 9.993096e-04	ci left: 8.958681e-01	ci right 8.967643e-01	k: 1595444	n:1780000
KS ci ratio: 1.855941e-01	ci left: 2.273113e-04	ci right 2.743398e-04	k: 445	n:1780000
GTF2I   1780000 perm   1467 sec   (1213 perm/sec)   p_kst 2.500000e-04   p_cons 8.963169e-01   p_joint 8.230337e-04

Joint ci ratio: 1.020260e-01	ci left: 7.819731e-04	ci right 8.665827e-04	k: 1474	n:1790000
Cons ci ratio: 9.964519e-04	ci left: 8.958810e-01	ci right 8.967747e-01	k: 1604428	n:1790000
KS ci ratio: 1.843580e-01	ci left: 2.292382e-04	ci right 2.763141e-04	k: 451	n:1790000
GTF2I   1790000 perm   1482 sec   (1208 perm/sec)   p_kst 2.519553e-04   p_cons 8.963285e-01   p_joint 8.234637e-04

Joint ci ratio: 1.033675e-01	ci left: 7.570594e-04	ci right 8.401158e-04	k: 1436	n:1800000
Cons ci ratio: 9.936780e-04	ci left: 8.958827e-01	ci right 8.967739e-01	k: 1613392	n:1800000
KS ci ratio: 1.837492e-01	ci left: 2.295545e-04	ci right 2.765224e-04	k: 454	n:1800000
GTF2I   1800000 perm   1496 sec   (1203 perm/sec)   p_kst 2.522222e-04   p_cons 8.963289e-01   p_joint 7.977778e-04

Joint ci ratio: 1.029741e-01	ci left: 7.587974e-04	ci right 8.417083e-04	k: 1447	n:1810000
Cons ci ratio: 9.909418e-04	ci left: 8.958815e-01	ci right 8.967703e-01	k: 1622351	n:1810000
KS ci ratio: 1.831463e-01	ci left: 2.298676e-04	ci right 2.767282e-04	k: 457	n:1810000
GTF2I   1810000 perm   1511 sec   (1198 perm/sec)   p_kst 2.524862e-04   p_cons 8.963265e-01   p_joint 7.994475e-04

Joint ci ratio: 1.027614e-01	ci left: 7.578400e-04	ci right 8.404651e-04	k: 1453	n:1820000
Cons ci ratio: 9.880967e-04	ci left: 8.959052e-01	ci right 8.967914e-01	k: 1631355	n:1820000
KS ci ratio: 1.829468e-01	ci left: 2.291289e-04	ci right 2.757823e-04	k: 458	n:1820000
GTF2I   1820000 perm   1526 sec   (1192 perm/sec)   p_kst 2.516484e-04   p_cons 8.963489e-01   p_joint 7.983516e-04

Joint ci ratio: 1.030458e-01	ci left: 7.494396e-04	ci right 8.313885e-04	k: 1445	n:1830000
Cons ci ratio: 9.854034e-04	ci left: 8.959045e-01	ci right 8.967883e-01	k: 1640315	n:1830000
KS ci ratio: 1.825496e-01	ci left: 2.289197e-04	ci right 2.754181e-04	k: 460	n:1830000
GTF2I   1830000 perm   1541 sec   (1187 perm/sec)   p_kst 2.513661e-04   p_cons 8.963470e-01   p_joint 7.896175e-04

Joint ci ratio: 1.035127e-01	ci left: 7.384836e-04	ci right 8.196227e-04	k: 1432	n:1840000
Cons ci ratio: 9.826716e-04	ci left: 8.959152e-01	ci right 8.967966e-01	k: 1649296	n:1840000
KS ci ratio: 1.821549e-01	ci left: 2.287129e-04	ci right 2.750578e-04	k: 462	n:1840000
GTF2I   1840000 perm   1556 sec   (1182 perm/sec)   p_kst 2.510870e-04   p_cons 8.963565e-01   p_joint 7.782609e-04

Joint ci ratio: 1.032250e-01	ci left: 7.387043e-04	ci right 8.196284e-04	k: 1440	n:1850000
Cons ci ratio: 9.799482e-04	ci left: 8.959286e-01	ci right 8.968075e-01	k: 1658282	n:1850000
KS ci ratio: 1.815676e-01	ci left: 2.290244e-04	ci right 2.752664e-04	k: 465	n:1850000
GTF2I   1850000 perm   1571 sec   (1178 perm/sec)   p_kst 2.513514e-04   p_cons 8.963686e-01   p_joint 7.783784e-04

Joint ci ratio: 1.049146e-01	ci left: 7.106447e-04	ci right 7.898478e-04	k: 1394	n:1860000
Cons ci ratio: 9.772331e-04	ci left: 8.959445e-01	ci right 8.968210e-01	k: 1667273	n:1860000
KS ci ratio: 1.813731e-01	ci left: 2.283063e-04	ci right 2.743485e-04	k: 466	n:1860000
GTF2I   1860000 perm   1586 sec   (1173 perm/sec)   p_kst 2.505376e-04   p_cons 8.963833e-01   p_joint 7.494624e-04

Joint ci ratio: 1.054457e-01	ci left: 6.995546e-04	ci right 7.779407e-04	k: 1380	n:1870000
Cons ci ratio: 9.747116e-04	ci left: 8.959275e-01	ci right 8.968017e-01	k: 1676203	n:1870000
KS ci ratio: 1.809860e-01	ci left: 2.281065e-04	ci right 2.739993e-04	k: 468	n:1870000
GTF2I   1870000 perm   1601 sec   (1168 perm/sec)   p_kst 2.502674e-04   p_cons 8.963652e-01   p_joint 7.379679e-04

Joint ci ratio: 1.051037e-01	ci left: 7.004948e-04	ci right 7.787160e-04	k: 1389	n:1880000
Cons ci ratio: 9.720786e-04	ci left: 8.959358e-01	ci right 8.968077e-01	k: 1685180	n:1880000
KS ci ratio: 1.800288e-01	ci left: 2.294325e-04	ci right 2.753215e-04	k: 473	n:1880000
GTF2I   1880000 perm   1616 sec   (1163 perm/sec)   p_kst 2.515957e-04   p_cons 8.963723e-01   p_joint 7.388298e-04

Joint ci ratio: 1.048400e-01	ci left: 7.003949e-04	ci right 7.783967e-04	k: 1396	n:1890000
Cons ci ratio: 9.695580e-04	ci left: 8.959265e-01	ci right 8.967961e-01	k: 1694124	n:1890000
KS ci ratio: 1.792739e-01	ci left: 2.302399e-04	ci right 2.760762e-04	k: 477	n:1890000
GTF2I   1890000 perm   1632 sec   (1158 perm/sec)   p_kst 2.523810e-04   p_cons 8.963619e-01   p_joint 7.386243e-04

Joint ci ratio: 1.050285e-01	ci left: 6.941460e-04	ci right 7.715994e-04	k: 1391	n:1900000
Cons ci ratio: 9.670515e-04	ci left: 8.959184e-01	ci right 8.967857e-01	k: 1703070	n:1900000
KS ci ratio: 1.787139e-01	ci left: 2.305363e-04	ci right 2.762728e-04	k: 480	n:1900000
GTF2I   1900000 perm   1647 sec   (1154 perm/sec)   p_kst 2.526316e-04   p_cons 8.963526e-01   p_joint 7.321053e-04

Joint ci ratio: 1.045786e-01	ci left: 6.966298e-04	ci right 7.740069e-04	k: 1403	n:1910000
Cons ci ratio: 9.644555e-04	ci left: 8.959313e-01	ci right 8.967963e-01	k: 1712056	n:1910000
KS ci ratio: 1.779754e-01	ci left: 2.313300e-04	ci right 2.770140e-04	k: 484	n:1910000
GTF2I   1910000 perm   1663 sec   (1149 perm/sec)   p_kst 2.534031e-04   p_cons 8.963644e-01   p_joint 7.345550e-04

Joint ci ratio: 1.043929e-01	ci left: 6.955376e-04	ci right 7.726478e-04	k: 1408	n:1920000
Cons ci ratio: 9.620071e-04	ci left: 8.959196e-01	ci right 8.967824e-01	k: 1720995	n:1920000
KS ci ratio: 1.777923e-01	ci left: 2.306228e-04	ci right 2.761152e-04	k: 485	n:1920000
GTF2I   1920000 perm   1679 sec   (1144 perm/sec)   p_kst 2.526042e-04   p_cons 8.963516e-01   p_joint 7.333333e-04

Joint ci ratio: 1.041346e-01	ci left: 6.954662e-04	ci right 7.723660e-04	k: 1415	n:1930000
Cons ci ratio: 9.595959e-04	ci left: 8.959043e-01	ci right 8.967649e-01	k: 1729927	n:1930000
KS ci ratio: 1.772460e-01	ci left: 2.309132e-04	ci right 2.763079e-04	k: 488	n:1930000
GTF2I   1930000 perm   1695 sec   (1139 perm/sec)   p_kst 2.528497e-04   p_cons 8.963352e-01   p_joint 7.331606e-04

Joint ci ratio: 1.039513e-01	ci left: 6.943915e-04	ci right 7.710291e-04	k: 1420	n:1940000
Cons ci ratio: 9.570727e-04	ci left: 8.959146e-01	ci right 8.967729e-01	k: 1738908	n:1940000
KS ci ratio: 1.765254e-01	ci left: 2.316935e-04	ci right 2.770367e-04	k: 492	n:1940000
GTF2I   1940000 perm   1713 sec   (1132 perm/sec)   p_kst 2.536082e-04   p_cons 8.963443e-01   p_joint 7.319588e-04

Joint ci ratio: 1.034428e-01	ci left: 6.978239e-04	ci right 7.744406e-04	k: 1434	n:1950000
Cons ci ratio: 9.546087e-04	ci left: 8.959170e-01	ci right 8.967731e-01	k: 1747874	n:1950000
KS ci ratio: 1.761685e-01	ci left: 2.314857e-04	ci right 2.766869e-04	k: 494	n:1950000
GTF2I   1950000 perm   1731 sec   (1127 perm/sec)   p_kst 2.533333e-04   p_cons 8.963456e-01   p_joint 7.353846e-04

Joint ci ratio: 1.069697e-01	ci left: 6.480618e-04	ci right 7.217938e-04	k: 1341	n:1960000
Cons ci ratio: 9.520199e-04	ci left: 8.959475e-01	ci right 8.968013e-01	k: 1756895	n:1960000
KS ci ratio: 1.759909e-01	ci left: 2.307924e-04	ci right 2.758079e-04	k: 495	n:1960000
GTF2I   1960000 perm   1748 sec   (1121 perm/sec)   p_kst 2.525510e-04   p_cons 8.963750e-01   p_joint 6.841837e-04

Joint ci ratio: 1.071298e-01	ci left: 6.427960e-04	ci right 7.160451e-04	k: 1337	n:1970000
Cons ci ratio: 9.496362e-04	ci left: 8.959416e-01	ci right 8.967933e-01	k: 1765845	n:1970000
KS ci ratio: 1.754610e-01	ci left: 2.310767e-04	ci right 2.759976e-04	k: 498	n:1970000
GTF2I   1970000 perm   1767 sec   (1115 perm/sec)   p_kst 2.527919e-04   p_cons 8.963680e-01   p_joint 6.786802e-04

Joint ci ratio: 1.109281e-01	ci left: 5.953333e-04	ci right 6.657365e-04	k: 1247	n:1980000
Cons ci ratio: 9.473013e-04	ci left: 8.959297e-01	ci right 8.967793e-01	k: 1774783	n:1980000
KS ci ratio: 1.749359e-01	ci left: 2.313584e-04	ci right 2.761852e-04	k: 501	n:1980000
GTF2I   1980000 perm   1785 sec   (1109 perm/sec)   p_kst 2.530303e-04   p_cons 8.963551e-01   p_joint 6.297980e-04

Joint ci ratio: 1.107952e-01	ci left: 5.938074e-04	ci right 6.639404e-04	k: 1250	n:1990000
Cons ci ratio: 9.449425e-04	ci left: 8.959259e-01	ci right 8.967734e-01	k: 1783737	n:1990000
KS ci ratio: 1.745885e-01	ci left: 2.311568e-04	ci right 2.758463e-04	k: 503	n:1990000
GTF2I   1990000 perm   1803 sec   (1104 perm/sec)   p_kst 2.527638e-04   p_cons 8.963503e-01   p_joint 6.281407e-04

Joint ci ratio: 1.106185e-01	ci left: 5.927830e-04	ci right 6.626761e-04	k: 1254	n:2000000
Cons ci ratio: 9.426317e-04	ci left: 8.959162e-01	ci right 8.967616e-01	k: 1792679	n:2000000
KS ci ratio: 1.745886e-01	ci left: 2.300011e-04	ci right 2.744671e-04	k: 503	n:2000000
GTF2I   2000000 perm   1822 sec   (1098 perm/sec)   p_kst 2.515000e-04   p_cons 8.963395e-01   p_joint 6.270000e-04

Joint ci ratio: 1.103550e-01	ci left: 5.927364e-04	ci right 6.624468e-04	k: 1260	n:2010000
Cons ci ratio: 9.403177e-04	ci left: 8.959106e-01	ci right 8.967539e-01	k: 1801629	n:2010000
KS ci ratio: 1.742433e-01	ci left: 2.298084e-04	ci right 2.741400e-04	k: 505	n:2010000
GTF2I   2010000 perm   1839 sec   (1093 perm/sec)   p_kst 2.512438e-04   p_cons 8.963328e-01   p_joint 6.268657e-04

Joint ci ratio: 1.102241e-01	ci left: 5.912462e-04	ci right 6.606934e-04	k: 1263	n:2020000
Cons ci ratio: 9.379456e-04	ci left: 8.959199e-01	ci right 8.967611e-01	k: 1810609	n:2020000
KS ci ratio: 1.740714e-01	ci left: 2.291442e-04	ci right 2.732995e-04	k: 506	n:2020000
GTF2I   2020000 perm   1855 sec   (1089 perm/sec)   p_kst 2.504950e-04   p_cons 8.963411e-01   p_joint 6.252475e-04

Joint ci ratio: 1.100502e-01	ci left: 5.902498e-04	ci right 6.594635e-04	k: 1267	n:2030000
Cons ci ratio: 9.357154e-04	ci left: 8.959045e-01	ci right 8.967437e-01	k: 1819539	n:2030000
KS ci ratio: 1.735587e-01	ci left: 2.294289e-04	ci right 2.734952e-04	k: 509	n:2030000
GTF2I   2030000 perm   1872 sec   (1085 perm/sec)   p_kst 2.507389e-04   p_cons 8.963246e-01   p_joint 6.241379e-04

Joint ci ratio: 1.097907e-01	ci left: 5.902168e-04	ci right 6.592529e-04	k: 1273	n:2040000
Cons ci ratio: 9.332745e-04	ci left: 8.959344e-01	ci right 8.967714e-01	k: 1828561	n:2040000
KS ci ratio: 1.735588e-01	ci left: 2.283042e-04	ci right 2.721546e-04	k: 509	n:2040000
GTF2I   2040000 perm   1888 sec   (1080 perm/sec)   p_kst 2.495098e-04   p_cons 8.963534e-01   p_joint 6.240196e-04

Joint ci ratio: 1.096188e-01	ci left: 5.892353e-04	ci right 6.580418e-04	k: 1277	n:2050000
Cons ci ratio: 9.310041e-04	ci left: 8.959337e-01	ci right 8.967686e-01	k: 1837521	n:2050000
KS ci ratio: 1.733889e-01	ci left: 2.276572e-04	ci right 2.713360e-04	k: 510	n:2050000
GTF2I   2050000 perm   1905 sec   (1076 perm/sec)   p_kst 2.487805e-04   p_cons 8.963517e-01   p_joint 6.229268e-04

Joint ci ratio: 1.093198e-01	ci left: 5.896800e-04	ci right 6.583384e-04	k: 1284	n:2060000
Cons ci ratio: 9.287986e-04	ci left: 8.959232e-01	ci right 8.967562e-01	k: 1846461	n:2060000
KS ci ratio: 1.732196e-01	ci left: 2.270164e-04	ci right 2.705253e-04	k: 511	n:2060000
GTF2I   2060000 perm   1921 sec   (1072 perm/sec)   p_kst 2.480583e-04   p_cons 8.963403e-01   p_joint 6.233010e-04

Joint ci ratio: 1.092774e-01	ci left: 5.873011e-04	ci right 6.556544e-04	k: 1285	n:2070000
Cons ci ratio: 9.265486e-04	ci left: 8.959250e-01	ci right 8.967560e-01	k: 1855426	n:2070000
KS ci ratio: 1.732197e-01	ci left: 2.259197e-04	ci right 2.692184e-04	k: 511	n:2070000
GTF2I   2070000 perm   1938 sec   (1068 perm/sec)   p_kst 2.468599e-04   p_cons 8.963411e-01   p_joint 6.207729e-04

Joint ci ratio: 1.091503e-01	ci left: 5.858804e-04	ci right 6.539839e-04	k: 1288	n:2080000
Cons ci ratio: 9.242335e-04	ci left: 8.959432e-01	ci right 8.967721e-01	k: 1864425	n:2080000
KS ci ratio: 1.732198e-01	ci left: 2.248336e-04	ci right 2.679241e-04	k: 511	n:2080000
GTF2I   2080000 perm   1955 sec   (1064 perm/sec)   p_kst 2.456731e-04   p_cons 8.963582e-01   p_joint 6.192308e-04

Joint ci ratio: 1.089814e-01	ci left: 5.849388e-04	ci right 6.528209e-04	k: 1292	n:2090000
Cons ci ratio: 9.220876e-04	ci left: 8.959305e-01	ci right 8.967574e-01	k: 1873360	n:2090000
KS ci ratio: 1.728825e-01	ci left: 2.246733e-04	ci right 2.676405e-04	k: 513	n:2090000
GTF2I   2090000 perm   1972 sec   (1060 perm/sec)   p_kst 2.454545e-04   p_cons 8.963445e-01   p_joint 6.181818e-04

Joint ci ratio: 1.087713e-01	ci left: 5.844695e-04	ci right 6.521580e-04	k: 1297	n:2100000
Cons ci ratio: 9.198364e-04	ci left: 8.959422e-01	ci right 8.967672e-01	k: 1882346	n:2100000
KS ci ratio: 1.725471e-01	ci left: 2.245146e-04	ci right 2.673596e-04	k: 515	n:2100000
GTF2I   2100000 perm   1992 sec   (1054 perm/sec)   p_kst 2.452381e-04   p_cons 8.963552e-01   p_joint 6.176190e-04

Joint ci ratio: 1.085624e-01	ci left: 5.840048e-04	ci right 6.515013e-04	k: 1302	n:2110000
Cons ci ratio: 9.176133e-04	ci left: 8.959515e-01	ci right 8.967744e-01	k: 1891327	n:2110000
KS ci ratio: 1.722137e-01	ci left: 2.243575e-04	ci right 2.670812e-04	k: 517	n:2110000
GTF2I   2110000 perm   2027 sec   (1041 perm/sec)   p_kst 2.450237e-04   p_cons 8.963635e-01   p_joint 6.170616e-04

Joint ci ratio: 1.084378e-01	ci left: 5.826267e-04	ci right 6.498816e-04	k: 1305	n:2120000
Cons ci ratio: 9.154945e-04	ci left: 8.959427e-01	ci right 8.967638e-01	k: 1900270	n:2120000
KS ci ratio: 1.720478e-01	ci left: 2.237506e-04	ci right 2.663134e-04	k: 518	n:2120000
GTF2I   2120000 perm   2048 sec   (1035 perm/sec)   p_kst 2.443396e-04   p_cons 8.963538e-01   p_joint 6.155660e-04

Joint ci ratio: 1.079428e-01	ci left: 5.853728e-04	ci right 6.526167e-04	k: 1317	n:2130000
Cons ci ratio: 9.132864e-04	ci left: 8.959552e-01	ci right 8.967743e-01	k: 1909258	n:2130000
KS ci ratio: 1.713885e-01	ci left: 2.244974e-04	ci right 2.670216e-04	k: 522	n:2130000
GTF2I   2130000 perm   2066 sec   (1031 perm/sec)   p_kst 2.450704e-04   p_cons 8.963653e-01   p_joint 6.183099e-04

Joint ci ratio: 1.076980e-01	ci left: 5.853655e-04	ci right 6.524464e-04	k: 1323	n:2140000
Cons ci ratio: 9.111745e-04	ci left: 8.959511e-01	ci right 8.967683e-01	k: 1918211	n:2140000
KS ci ratio: 1.708991e-01	ci left: 2.247902e-04	ci right 2.672357e-04	k: 525	n:2140000
GTF2I   2140000 perm   2084 sec   (1027 perm/sec)   p_kst 2.453271e-04   p_cons 8.963603e-01   p_joint 6.182243e-04

Joint ci ratio: 1.076575e-01	ci left: 5.830954e-04	ci right 6.498895e-04	k: 1324	n:2150000
Cons ci ratio: 9.092046e-04	ci left: 8.959211e-01	ci right 8.967365e-01	k: 1927108	n:2150000
KS ci ratio: 1.708992e-01	ci left: 2.237446e-04	ci right 2.659928e-04	k: 525	n:2150000
GTF2I   2150000 perm   2102 sec   (1023 perm/sec)   p_kst 2.441860e-04   p_cons 8.963293e-01   p_joint 6.158140e-04

Joint ci ratio: 1.075359e-01	ci left: 5.817474e-04	ci right 6.483070e-04	k: 1327	n:2160000
Cons ci ratio: 9.071049e-04	ci left: 8.959205e-01	ci right 8.967340e-01	k: 1936068	n:2160000
KS ci ratio: 1.707370e-01	ci left: 2.231519e-04	ci right 2.652441e-04	k: 526	n:2160000
GTF2I   2160000 perm   2138 sec   (1010 perm/sec)   p_kst 2.435185e-04   p_cons 8.963278e-01   p_joint 6.143519e-04

Joint ci ratio: 1.079435e-01	ci left: 5.745823e-04	ci right 6.405871e-04	k: 1317	n:2170000
Cons ci ratio: 9.049547e-04	ci left: 8.959333e-01	ci right 8.967449e-01	k: 1945057	n:2170000
KS ci ratio: 1.705753e-01	ci left: 2.225647e-04	ci right 2.645022e-04	k: 527	n:2170000
GTF2I   2170000 perm   2178 sec   (996 perm/sec)   p_kst 2.428571e-04   p_cons 8.963396e-01   p_joint 6.069124e-04

Joint ci ratio: 1.086888e-01	ci left: 5.639133e-04	ci right 6.291683e-04	k: 1299	n:2180000
Cons ci ratio: 9.027951e-04	ci left: 8.959511e-01	ci right 8.967607e-01	k: 1954057	n:2180000
KS ci ratio: 1.699328e-01	ci left: 2.233005e-04	ci right 2.652019e-04	k: 531	n:2180000
GTF2I   2180000 perm   2198 sec   (992 perm/sec)   p_kst 2.435780e-04   p_cons 8.963564e-01   p_joint 5.958716e-04

Joint ci ratio: 1.082731e-01	ci left: 5.657807e-04	ci right 6.309855e-04	k: 1309	n:2190000
Cons ci ratio: 9.006731e-04	ci left: 8.959641e-01	ci right 8.967719e-01	k: 1963047	n:2190000
KS ci ratio: 1.691397e-01	ci left: 2.244671e-04	ci right 2.663708e-04	k: 536	n:2190000
GTF2I   2190000 perm   2215 sec   (989 perm/sec)   p_kst 2.447489e-04   p_cons 8.963685e-01   p_joint 5.977169e-04

Joint ci ratio: 1.079849e-01	ci left: 5.663047e-04	ci right 6.313852e-04	k: 1316	n:2200000
Cons ci ratio: 8.987462e-04	ci left: 8.959396e-01	ci right 8.967457e-01	k: 1971955	n:2200000
KS ci ratio: 1.686692e-01	ci left: 2.247528e-04	ci right 2.665812e-04	k: 539	n:2200000
GTF2I   2200000 perm   2233 sec   (985 perm/sec)   p_kst 2.450000e-04   p_cons 8.963432e-01   p_joint 5.981818e-04

Joint ci ratio: 1.077805e-01	ci left: 5.659436e-04	ci right 6.308517e-04	k: 1321	n:2210000
Cons ci ratio: 8.967289e-04	ci left: 8.959367e-01	ci right 8.967410e-01	k: 1980910	n:2210000
KS ci ratio: 1.683577e-01	ci left: 2.246026e-04	ci right 2.663181e-04	k: 541	n:2210000
GTF2I   2210000 perm   2251 sec   (982 perm/sec)   p_kst 2.447964e-04   p_cons 8.963394e-01   p_joint 5.977376e-04

Joint ci ratio: 1.081085e-01	ci left: 5.598879e-04	ci right 6.243093e-04	k: 1313	n:2220000
Cons ci ratio: 8.946840e-04	ci left: 8.959424e-01	ci right 8.967448e-01	k: 1989884	n:2220000
KS ci ratio: 1.682027e-01	ci left: 2.240223e-04	ci right 2.655879e-04	k: 542	n:2220000
GTF2I   2220000 perm   2297 sec   (967 perm/sec)   p_kst 2.441441e-04   p_cons 8.963441e-01   p_joint 5.914414e-04

Joint ci ratio: 1.081086e-01	ci left: 5.573772e-04	ci right 6.215097e-04	k: 1313	n:2230000
Cons ci ratio: 8.926185e-04	ci left: 8.959553e-01	ci right 8.967558e-01	k: 1998874	n:2230000
KS ci ratio: 1.682028e-01	ci left: 2.230177e-04	ci right 2.643969e-04	k: 542	n:2230000
GTF2I   2230000 perm   2337 sec   (954 perm/sec)   p_kst 2.430493e-04   p_cons 8.963561e-01   p_joint 5.887892e-04

Joint ci ratio: 1.087315e-01	ci left: 5.483739e-04	ci right 6.118573e-04	k: 1298	n:2240000
Cons ci ratio: 8.905736e-04	ci left: 8.959666e-01	ci right 8.967654e-01	k: 2007861	n:2240000
KS ci ratio: 1.677400e-01	ci left: 2.233051e-04	ci right 2.646121e-04	k: 545	n:2240000
GTF2I   2240000 perm   2359 sec   (949 perm/sec)   p_kst 2.433036e-04   p_cons 8.963665e-01   p_joint 5.794643e-04

Joint ci ratio: 1.085229e-01	ci left: 5.480985e-04	ci right 6.114206e-04	k: 1303	n:2250000
Cons ci ratio: 8.886235e-04	ci left: 8.959610e-01	ci right 8.967580e-01	k: 2016810	n:2250000
KS ci ratio: 1.672811e-01	ci left: 2.235901e-04	ci right 2.648252e-04	k: 548	n:2250000
GTF2I   2250000 perm   2378 sec   (946 perm/sec)   p_kst 2.435556e-04   p_cons 8.963600e-01   p_joint 5.791111e-04

Joint ci ratio: 1.092378e-01	ci left: 5.383559e-04	ci right 6.009884e-04	k: 1286	n:2260000
Cons ci ratio: 8.865933e-04	ci left: 8.959749e-01	ci right 8.967701e-01	k: 2025803	n:2260000
KS ci ratio: 1.671290e-01	ci left: 2.230247e-04	ci right 2.641144e-04	k: 549	n:2260000
GTF2I   2260000 perm   2396 sec   (943 perm/sec)   p_kst 2.429204e-04   p_cons 8.963730e-01   p_joint 5.690265e-04

Joint ci ratio: 1.097942e-01	ci left: 5.304142e-04	ci right 5.924574e-04	k: 1273	n:2270000
Cons ci ratio: 8.846545e-04	ci left: 8.959724e-01	ci right 8.967658e-01	k: 2034759	n:2270000
KS ci ratio: 1.668260e-01	ci left: 2.228865e-04	ci right 2.638688e-04	k: 551	n:2270000
GTF2I   2270000 perm   2414 sec   (940 perm/sec)   p_kst 2.427313e-04   p_cons 8.963696e-01   p_joint 5.607930e-04

Joint ci ratio: 1.096223e-01	ci left: 5.297940e-04	ci right 5.916614e-04	k: 1277	n:2280000
Cons ci ratio: 8.826575e-04	ci left: 8.959848e-01	ci right 8.967764e-01	k: 2043749	n:2280000
KS ci ratio: 1.662247e-01	ci left: 2.235902e-04	ci right 2.645389e-04	k: 555	n:2280000
GTF2I   2280000 perm   2432 sec   (937 perm/sec)   p_kst 2.434211e-04   p_cons 8.963811e-01   p_joint 5.600877e-04

Joint ci ratio: 1.091958e-01	ci left: 5.317279e-04	ci right 5.935640e-04	k: 1287	n:2290000
Cons ci ratio: 8.807630e-04	ci left: 8.959783e-01	ci right 8.967683e-01	k: 2052696	n:2290000
KS ci ratio: 1.656299e-01	ci left: 2.242880e-04	ci right 2.652029e-04	k: 559	n:2290000
GTF2I   2290000 perm   2450 sec   (935 perm/sec)   p_kst 2.441048e-04   p_cons 8.963738e-01   p_joint 5.620087e-04

Joint ci ratio: 1.089423e-01	ci left: 5.319535e-04	ci right 5.936631e-04	k: 1293	n:2300000
Cons ci ratio: 8.788991e-04	ci left: 8.959680e-01	ci right 8.967562e-01	k: 2061634	n:2300000
KS ci ratio: 1.653350e-01	ci left: 2.241464e-04	ci right 2.649554e-04	k: 561	n:2300000
GTF2I   2300000 perm   2469 sec   (932 perm/sec)   p_kst 2.439130e-04   p_cons 8.963626e-01   p_joint 5.621739e-04

Joint ci ratio: 1.085654e-01	ci left: 5.334409e-04	ci right 5.950951e-04	k: 1302	n:2310000
Cons ci ratio: 8.770103e-04	ci left: 8.959655e-01	ci right 8.967521e-01	k: 2070590	n:2310000
KS ci ratio: 1.648954e-01	ci left: 2.244211e-04	ci right 2.651607e-04	k: 564	n:2310000
GTF2I   2310000 perm   2506 sec   (922 perm/sec)   p_kst 2.441558e-04   p_cons 8.963593e-01   p_joint 5.636364e-04

Joint ci ratio: 1.081923e-01	ci left: 5.349157e-04	ci right 5.965144e-04	k: 1311	n:2320000
Cons ci ratio: 8.751620e-04	ci left: 8.959571e-01	ci right 8.967419e-01	k: 2079532	n:2320000
KS ci ratio: 1.641705e-01	ci left: 2.255202e-04	ci right 2.662616e-04	k: 569	n:2320000
GTF2I   2320000 perm   2543 sec   (912 perm/sec)   p_kst 2.452586e-04   p_cons 8.963500e-01   p_joint 5.650862e-04

Joint ci ratio: 1.101415e-01	ci left: 5.134161e-04	ci right 5.736734e-04	k: 1265	n:2330000
Cons ci ratio: 8.732769e-04	ci left: 8.959590e-01	ci right 8.967422e-01	k: 2088498	n:2330000
KS ci ratio: 1.637402e-01	ci left: 2.257870e-04	ci right 2.664592e-04	k: 572	n:2330000
GTF2I   2330000 perm   2562 sec   (910 perm/sec)   p_kst 2.454936e-04   p_cons 8.963511e-01   p_joint 5.429185e-04

Joint ci ratio: 1.100113e-01	ci left: 5.124688e-04	ci right 5.725391e-04	k: 1268	n:2340000
Cons ci ratio: 8.712816e-04	ci left: 8.959870e-01	ci right 8.967684e-01	k: 2097525	n:2340000
KS ci ratio: 1.634552e-01	ci left: 2.256418e-04	ci right 2.662101e-04	k: 574	n:2340000
GTF2I   2340000 perm   2581 sec   (907 perm/sec)   p_kst 2.452991e-04   p_cons 8.963782e-01   p_joint 5.418803e-04

Joint ci ratio: 1.097952e-01	ci left: 5.123572e-04	ci right 5.722889e-04	k: 1273	n:2350000
Cons ci ratio: 8.693976e-04	ci left: 8.959939e-01	ci right 8.967736e-01	k: 2106503	n:2350000
KS ci ratio: 1.633133e-01	ci left: 2.250898e-04	ci right 2.655202e-04	k: 575	n:2350000
GTF2I   2350000 perm   2600 sec   (904 perm/sec)   p_kst 2.446809e-04   p_cons 8.963843e-01   p_joint 5.417021e-04

Joint ci ratio: 1.094521e-01	ci left: 5.134831e-04	ci right 5.733467e-04	k: 1281	n:2360000
Cons ci ratio: 8.675533e-04	ci left: 8.959948e-01	ci right 8.967729e-01	k: 2115467	n:2360000
KS ci ratio: 1.633134e-01	ci left: 2.241360e-04	ci right 2.643951e-04	k: 575	n:2360000
GTF2I   2360000 perm   2619 sec   (901 perm/sec)   p_kst 2.436441e-04   p_cons 8.963843e-01   p_joint 5.427966e-04

Joint ci ratio: 1.091121e-01	ci left: 5.145998e-04	ci right 5.743952e-04	k: 1289	n:2370000
Cons ci ratio: 8.657011e-04	ci left: 8.959999e-01	ci right 8.967763e-01	k: 2124441	n:2370000
KS ci ratio: 1.628897e-01	ci left: 2.244044e-04	ci right 2.645970e-04	k: 578	n:2370000
GTF2I   2370000 perm   2638 sec   (898 perm/sec)   p_kst 2.438819e-04   p_cons 8.963886e-01   p_joint 5.438819e-04

Joint ci ratio: 1.087753e-01	ci left: 5.157074e-04	ci right 5.754347e-04	k: 1297	n:2380000
Cons ci ratio: 8.638823e-04	ci left: 8.960004e-01	ci right 8.967751e-01	k: 2133404	n:2380000
KS ci ratio: 1.624693e-01	ci left: 2.246708e-04	ci right 2.647970e-04	k: 581	n:2380000
GTF2I   2380000 perm   2657 sec   (896 perm/sec)   p_kst 2.441176e-04   p_cons 8.963882e-01   p_joint 5.449580e-04

Joint ci ratio: 1.085664e-01	ci left: 5.155848e-04	ci right 5.751759e-04	k: 1302	n:2390000
Cons ci ratio: 8.620204e-04	ci left: 8.960125e-01	ci right 8.967857e-01	k: 2142395	n:2390000
KS ci ratio: 1.623300e-01	ci left: 2.241321e-04	ci right 2.641245e-04	k: 582	n:2390000
GTF2I   2390000 perm   2676 sec   (893 perm/sec)   p_kst 2.435146e-04   p_cons 8.963996e-01   p_joint 5.447699e-04

Joint ci ratio: 1.084417e-01	ci left: 5.146526e-04	ci right 5.740633e-04	k: 1305	n:2400000
Cons ci ratio: 8.601744e-04	ci left: 8.960238e-01	ci right 8.967953e-01	k: 2151384	n:2400000
KS ci ratio: 1.619139e-01	ci left: 2.243975e-04	ci right 2.643246e-04	k: 585	n:2400000
GTF2I   2400000 perm   2695 sec   (891 perm/sec)   p_kst 2.437500e-04   p_cons 8.964100e-01   p_joint 5.437500e-04

Joint ci ratio: 1.082347e-01	ci left: 5.145356e-04	ci right 5.738122e-04	k: 1310	n:2410000
Cons ci ratio: 8.583690e-04	ci left: 8.960287e-01	ci right 8.967986e-01	k: 2160358	n:2410000
KS ci ratio: 1.616383e-01	ci left: 2.242627e-04	ci right 2.640913e-04	k: 587	n:2410000
GTF2I   2410000 perm   2722 sec   (886 perm/sec)   p_kst 2.435685e-04   p_cons 8.964141e-01   p_joint 5.435685e-04

Joint ci ratio: 1.079059e-01	ci left: 5.156259e-04	ci right 5.748361e-04	k: 1318	n:2420000
Cons ci ratio: 8.565863e-04	ci left: 8.960311e-01	ci right 8.967994e-01	k: 2169326	n:2420000
KS ci ratio: 1.609553e-01	ci left: 2.253187e-04	ci right 2.651494e-04	k: 592	n:2420000
GTF2I   2420000 perm   2761 sec   (876 perm/sec)   p_kst 2.446281e-04   p_cons 8.964157e-01   p_joint 5.446281e-04

Joint ci ratio: 1.081937e-01	ci left: 5.107011e-04	ci right 5.695121e-04	k: 1311	n:2430000
Cons ci ratio: 8.548734e-04	ci left: 8.960207e-01	ci right 8.967874e-01	k: 2178263	n:2430000
KS ci ratio: 1.606846e-01	ci left: 2.251814e-04	ci right 2.649144e-04	k: 594	n:2430000
GTF2I   2430000 perm   2806 sec   (866 perm/sec)   p_kst 2.444444e-04   p_cons 8.964045e-01   p_joint 5.395062e-04

Joint ci ratio: 1.079881e-01	ci left: 5.106018e-04	ci right 5.692826e-04	k: 1316	n:2440000
Cons ci ratio: 8.530766e-04	ci left: 8.960309e-01	ci right 8.967960e-01	k: 2187250	n:2440000
KS ci ratio: 1.605498e-01	ci left: 2.246519e-04	ci right 2.642550e-04	k: 595	n:2440000
GTF2I   2440000 perm   2838 sec   (860 perm/sec)   p_kst 2.438525e-04   p_cons 8.964139e-01   p_joint 5.393443e-04

Joint ci ratio: 1.078245e-01	ci left: 5.101063e-04	ci right 5.686357e-04	k: 1320	n:2450000
Cons ci ratio: 8.513640e-04	ci left: 8.960251e-01	ci right 8.967887e-01	k: 2196198	n:2450000
KS ci ratio: 1.600137e-01	ci left: 2.253021e-04	ci right 2.648745e-04	k: 599	n:2450000
GTF2I   2450000 perm   2858 sec   (857 perm/sec)   p_kst 2.444898e-04   p_cons 8.964073e-01   p_joint 5.387755e-04

Joint ci ratio: 1.074994e-01	ci left: 5.111972e-04	ci right 5.696638e-04	k: 1328	n:2460000
Cons ci ratio: 8.495799e-04	ci left: 8.960372e-01	ci right 8.967992e-01	k: 2205190	n:2460000
KS ci ratio: 1.596151e-01	ci left: 2.255570e-04	ci right 2.650660e-04	k: 602	n:2460000
GTF2I   2460000 perm   2878 sec   (855 perm/sec)   p_kst 2.447154e-04   p_cons 8.964187e-01   p_joint 5.398374e-04

Joint ci ratio: 1.073380e-01	ci left: 5.107035e-04	ci right 5.690204e-04	k: 1332	n:2470000
Cons ci ratio: 8.478716e-04	ci left: 8.960351e-01	ci right 8.967955e-01	k: 2214147	n:2470000
KS ci ratio: 1.594830e-01	ci left: 2.250325e-04	ci right 2.644139e-04	k: 603	n:2470000
GTF2I   2470000 perm   2898 sec   (852 perm/sec)   p_kst 2.441296e-04   p_cons 8.964158e-01   p_joint 5.392713e-04

Joint ci ratio: 1.072175e-01	ci left: 5.098214e-04	ci right 5.679681e-04	k: 1335	n:2480000
Cons ci ratio: 8.462030e-04	ci left: 8.960265e-01	ci right 8.967855e-01	k: 2223088	n:2480000
KS ci ratio: 1.592196e-01	ci left: 2.248994e-04	ci right 2.641863e-04	k: 605	n:2480000
GTF2I   2480000 perm   2917 sec   (850 perm/sec)   p_kst 2.439516e-04   p_cons 8.964065e-01   p_joint 5.383065e-04

Joint ci ratio: 1.070175e-01	ci left: 5.097282e-04	ci right 5.677489e-04	k: 1340	n:2490000
Cons ci ratio: 8.444475e-04	ci left: 8.960393e-01	ci right 8.967967e-01	k: 2232082	n:2490000
KS ci ratio: 1.589576e-01	ci left: 2.247674e-04	ci right 2.639605e-04	k: 607	n:2490000
GTF2I   2490000 perm   2937 sec   (848 perm/sec)   p_kst 2.437751e-04   p_cons 8.964185e-01   p_joint 5.381526e-04

Joint ci ratio: 1.066996e-01	ci left: 5.108037e-04	ci right 5.687634e-04	k: 1348	n:2500000
Cons ci ratio: 8.427191e-04	ci left: 8.960484e-01	ci right 8.968043e-01	k: 2241067	n:2500000
KS ci ratio: 1.584372e-01	ci left: 2.254048e-04	ci right 2.645681e-04	k: 611	n:2500000
GTF2I   2500000 perm   2957 sec   (846 perm/sec)   p_kst 2.444000e-04   p_cons 8.964268e-01   p_joint 5.392000e-04

Joint ci ratio: 1.066207e-01	ci left: 5.095442e-04	ci right 5.673154e-04	k: 1350	n:2510000
Cons ci ratio: 8.409850e-04	ci left: 8.960611e-01	ci right 8.968153e-01	k: 2250061	n:2510000
KS ci ratio: 1.583079e-01	ci left: 2.248894e-04	ci right 2.639282e-04	k: 612	n:2510000
GTF2I   2510000 perm   2976 sec   (843 perm/sec)   p_kst 2.438247e-04   p_cons 8.964386e-01   p_joint 5.378486e-04

Joint ci ratio: 1.065419e-01	ci left: 5.082947e-04	ci right 5.658790e-04	k: 1352	n:2520000
Cons ci ratio: 8.393746e-04	ci left: 8.960485e-01	ci right 8.968014e-01	k: 2258992	n:2520000
KS ci ratio: 1.583080e-01	ci left: 2.239970e-04	ci right 2.628809e-04	k: 612	n:2520000
GTF2I   2520000 perm   2996 sec   (841 perm/sec)   p_kst 2.428571e-04   p_cons 8.964254e-01   p_joint 5.365079e-04

Joint ci ratio: 1.061892e-01	ci left: 5.097483e-04	ci right 5.672942e-04	k: 1361	n:2530000
Cons ci ratio: 8.376932e-04	ci left: 8.960539e-01	ci right 8.968052e-01	k: 2267968	n:2530000
KS ci ratio: 1.575388e-01	ci left: 2.253894e-04	ci right 2.643070e-04	k: 618	n:2530000
GTF2I   2530000 perm   3025 sec   (836 perm/sec)   p_kst 2.442688e-04   p_cons 8.964300e-01   p_joint 5.379447e-04

Joint ci ratio: 1.060337e-01	ci left: 5.092744e-04	ci right 5.666774e-04	k: 1365	n:2540000
Cons ci ratio: 8.361353e-04	ci left: 8.960340e-01	ci right 8.967839e-01	k: 2276880	n:2540000
KS ci ratio: 1.574117e-01	ci left: 2.248803e-04	ci right 2.636757e-04	k: 619	n:2540000
GTF2I   2540000 perm   3065 sec   (829 perm/sec)   p_kst 2.437008e-04   p_cons 8.964094e-01   p_joint 5.374016e-04

Joint ci ratio: 1.057630e-01	ci left: 5.099497e-04	ci right 5.672729e-04	k: 1372	n:2550000
Cons ci ratio: 8.344996e-04	ci left: 8.960336e-01	ci right 8.967820e-01	k: 2285841	n:2550000
KS ci ratio: 1.570323e-01	ci left: 2.251286e-04	ci right 2.638643e-04	k: 622	n:2550000
GTF2I   2550000 perm   3092 sec   (825 perm/sec)   p_kst 2.439216e-04   p_cons 8.964082e-01   p_joint 5.380392e-04

Joint ci ratio: 1.055327e-01	ci left: 5.102395e-04	ci right 5.674626e-04	k: 1378	n:2560000
Cons ci ratio: 8.328087e-04	ci left: 8.960476e-01	ci right 8.967945e-01	k: 2294839	n:2560000
KS ci ratio: 1.565305e-01	ci left: 2.257504e-04	ci right 2.644574e-04	k: 626	n:2560000
GTF2I   2560000 perm   3121 sec   (820 perm/sec)   p_kst 2.445313e-04   p_cons 8.964215e-01   p_joint 5.382813e-04

Joint ci ratio: 1.053800e-01	ci left: 5.097695e-04	ci right 5.668521e-04	k: 1382	n:2570000
Cons ci ratio: 8.312221e-04	ci left: 8.960404e-01	ci right 8.967859e-01	k: 2303783	n:2570000
KS ci ratio: 1.565306e-01	ci left: 2.248720e-04	ci right 2.634284e-04	k: 626	n:2570000
GTF2I   2570000 perm   3153 sec   (815 perm/sec)   p_kst 2.435798e-04   p_cons 8.964136e-01   p_joint 5.377432e-04

Joint ci ratio: 1.068591e-01	ci left: 4.934556e-04	ci right 5.495358e-04	k: 1344	n:2580000
Cons ci ratio: 8.295822e-04	ci left: 8.960473e-01	ci right 8.967913e-01	k: 2312763	n:2580000
KS ci ratio: 1.560336e-01	ci left: 2.254901e-04	ci right 2.640183e-04	k: 630	n:2580000
GTF2I   2580000 perm   3176 sec   (812 perm/sec)   p_kst 2.441860e-04   p_cons 8.964198e-01   p_joint 5.209302e-04

Joint ci ratio: 1.066611e-01	ci left: 4.934294e-04	ci right 5.493961e-04	k: 1349	n:2590000
Cons ci ratio: 8.280208e-04	ci left: 8.960387e-01	ci right 8.967813e-01	k: 2321703	n:2590000
KS ci ratio: 1.557869e-01	ci left: 2.253616e-04	ci right 2.638012e-04	k: 632	n:2590000
GTF2I   2590000 perm   3196 sec   (810 perm/sec)   p_kst 2.440154e-04   p_cons 8.964104e-01   p_joint 5.208494e-04

Joint ci ratio: 1.062681e-01	ci left: 4.952753e-04	ci right 5.512315e-04	k: 1359	n:2600000
Cons ci ratio: 8.264801e-04	ci left: 8.960274e-01	ci right 8.967686e-01	k: 2330636	n:2600000
KS ci ratio: 1.551752e-01	ci left: 2.263431e-04	ci right 2.647844e-04	k: 637	n:2600000
GTF2I   2600000 perm   3217 sec   (808 perm/sec)   p_kst 2.450000e-04   p_cons 8.963985e-01   p_joint 5.226923e-04

Joint ci ratio: 1.076633e-01	ci left: 4.803263e-04	ci right 5.353512e-04	k: 1324	n:2610000
Cons ci ratio: 8.249752e-04	ci left: 8.960101e-01	ci right 8.967500e-01	k: 2339553	n:2610000
KS ci ratio: 1.546910e-01	ci left: 2.269490e-04	ci right 2.653619e-04	k: 641	n:2610000
GTF2I   2610000 perm   3237 sec   (806 perm/sec)   p_kst 2.455939e-04   p_cons 8.963805e-01   p_joint 5.072797e-04

Joint ci ratio: 1.075417e-01	ci left: 4.796072e-04	ci right 5.344837e-04	k: 1327	n:2620000
Cons ci ratio: 8.233500e-04	ci left: 8.960220e-01	ci right 8.967604e-01	k: 2348546	n:2620000
KS ci ratio: 1.544506e-01	ci left: 2.268166e-04	ci right 2.651419e-04	k: 643	n:2620000
GTF2I   2620000 perm   3258 sec   (804 perm/sec)   p_kst 2.454198e-04   p_cons 8.963916e-01   p_joint 5.064885e-04

Joint ci ratio: 1.073398e-01	ci left: 4.796337e-04	ci right 5.344036e-04	k: 1332	n:2630000
Cons ci ratio: 8.217914e-04	ci left: 8.960208e-01	ci right 8.967578e-01	k: 2357505	n:2630000
KS ci ratio: 1.542114e-01	ci left: 2.266853e-04	ci right 2.649235e-04	k: 645	n:2630000
GTF2I   2630000 perm   3278 sec   (802 perm/sec)   p_kst 2.452471e-04   p_cons 8.963897e-01   p_joint 5.064639e-04

Joint ci ratio: 1.071791e-01	ci left: 4.792914e-04	ci right 5.339352e-04	k: 1336	n:2640000
Cons ci ratio: 8.202350e-04	ci left: 8.960212e-01	ci right 8.967568e-01	k: 2366468	n:2640000
KS ci ratio: 1.540922e-01	ci left: 2.261908e-04	ci right 2.643134e-04	k: 646	n:2640000
GTF2I   2640000 perm   3301 sec   (800 perm/sec)   p_kst 2.446970e-04   p_cons 8.963894e-01   p_joint 5.060606e-04

Joint ci ratio: 1.071392e-01	ci left: 4.778499e-04	ci right 5.323078e-04	k: 1337	n:2650000
Cons ci ratio: 8.186808e-04	ci left: 8.960230e-01	ci right 8.967572e-01	k: 2375435	n:2650000
KS ci ratio: 1.539733e-01	ci left: 2.257001e-04	ci right 2.637079e-04	k: 647	n:2650000
GTF2I   2650000 perm   3344 sec   (792 perm/sec)   p_kst 2.441509e-04   p_cons 8.963906e-01   p_joint 5.045283e-04

Joint ci ratio: 1.189823e-01	ci left: 3.836219e-04	ci right 4.325141e-04	k: 1084	n:2660000
Cons ci ratio: 8.172263e-04	ci left: 8.960042e-01	ci right 8.967371e-01	k: 2384347	n:2660000
KS ci ratio: 1.613659e-01	ci left: 2.039067e-04	ci right 2.400531e-04	k: 589	n:2660000
GTF2I   2660000 perm   3422 sec   (777 perm/sec)   p_kst 2.214286e-04   p_cons 8.963711e-01   p_joint 4.075188e-04

Joint ci ratio: 1.188182e-01	ci left: 3.832753e-04	ci right 4.320512e-04	k: 1087	n:2670000
Cons ci ratio: 8.157302e-04	ci left: 8.959967e-01	ci right 8.967283e-01	k: 2393289	n:2670000
KS ci ratio: 1.610931e-01	ci left: 2.038618e-04	ci right 2.399333e-04	k: 591	n:2670000
GTF2I   2670000 perm   3443 sec   (775 perm/sec)   p_kst 2.213483e-04   p_cons 8.963629e-01   p_joint 4.071161e-04

Joint ci ratio: 1.183837e-01	ci left: 3.847417e-04	ci right 4.335126e-04	k: 1095	n:2680000
Cons ci ratio: 8.142079e-04	ci left: 8.959972e-01	ci right 8.967274e-01	k: 2402252	n:2680000
KS ci ratio: 1.604170e-01	ci left: 2.048918e-04	ci right 2.409787e-04	k: 596	n:2680000
GTF2I   2680000 perm   3464 sec   (774 perm/sec)   p_kst 2.223881e-04   p_cons 8.963627e-01   p_joint 4.085821e-04

Joint ci ratio: 1.178472e-01	ci left: 3.869191e-04	ci right 4.357282e-04	k: 1105	n:2690000
Cons ci ratio: 8.126876e-04	ci left: 8.959991e-01	ci right 8.967279e-01	k: 2411219	n:2690000
KS ci ratio: 1.596168e-01	ci left: 2.062713e-04	ci right 2.424026e-04	k: 602	n:2690000
GTF2I   2690000 perm   3486 sec   (772 perm/sec)   p_kst 2.237918e-04   p_cons 8.963639e-01   p_joint 4.107807e-04

Joint ci ratio: 1.176346e-01	ci left: 3.869239e-04	ci right 4.356395e-04	k: 1109	n:2700000
Cons ci ratio: 8.112097e-04	ci left: 8.959932e-01	ci right 8.967207e-01	k: 2420165	n:2700000
KS ci ratio: 1.592212e-01	ci left: 2.065741e-04	ci right 2.426602e-04	k: 605	n:2700000
GTF2I   2700000 perm   3507 sec   (770 perm/sec)   p_kst 2.240741e-04   p_cons 8.963574e-01   p_joint 4.107407e-04

Joint ci ratio: 1.174760e-01	ci left: 3.865706e-04	ci right 4.351716e-04	k: 1112	n:2710000
Cons ci ratio: 8.096209e-04	ci left: 8.960148e-01	ci right 8.967408e-01	k: 2429185	n:2710000
KS ci ratio: 1.590900e-01	ci left: 2.061661e-04	ci right 2.421485e-04	k: 606	n:2710000
GTF2I   2710000 perm   3529 sec   (768 perm/sec)   p_kst 2.236162e-04   p_cons 8.963782e-01   p_joint 4.103321e-04

Joint ci ratio: 1.172130e-01	ci left: 3.869336e-04	ci right 4.354638e-04	k: 1117	n:2720000
Cons ci ratio: 8.081773e-04	ci left: 8.960048e-01	ci right 8.967296e-01	k: 2438120	n:2720000
KS ci ratio: 1.586983e-01	ci left: 2.064673e-04	ci right 2.424050e-04	k: 609	n:2720000
GTF2I   2720000 perm   3550 sec   (766 perm/sec)   p_kst 2.238971e-04   p_cons 8.963676e-01   p_joint 4.106618e-04

Joint ci ratio: 1.168477e-01	ci left: 3.880054e-04	ci right 4.365078e-04	k: 1124	n:2730000
Cons ci ratio: 8.067461e-04	ci left: 8.959939e-01	ci right 8.967174e-01	k: 2447052	n:2730000
KS ci ratio: 1.581805e-01	ci left: 2.071181e-04	ci right 2.430403e-04	k: 613	n:2730000
GTF2I   2730000 perm   3572 sec   (764 perm/sec)   p_kst 2.245421e-04   p_cons 8.963560e-01   p_joint 4.117216e-04

Joint ci ratio: 1.164344e-01	ci left: 3.894238e-04	ci right 4.379196e-04	k: 1132	n:2740000
Cons ci ratio: 8.052846e-04	ci left: 8.959918e-01	ci right 8.967140e-01	k: 2456008	n:2740000
KS ci ratio: 1.580519e-01	ci left: 2.067127e-04	ci right 2.425327e-04	k: 614	n:2740000
GTF2I   2740000 perm   3593 sec   (763 perm/sec)   p_kst 2.240876e-04   p_cons 8.963533e-01   p_joint 4.131387e-04

Joint ci ratio: 1.163831e-01	ci left: 3.883608e-04	ci right 4.367014e-04	k: 1133	n:2750000
Cons ci ratio: 8.038687e-04	ci left: 8.959810e-01	ci right 8.967018e-01	k: 2464940	n:2750000
KS ci ratio: 1.580520e-01	ci left: 2.059610e-04	ci right 2.416507e-04	k: 614	n:2750000
GTF2I   2750000 perm   3615 sec   (761 perm/sec)   p_kst 2.232727e-04   p_cons 8.963418e-01   p_joint 4.120000e-04

Joint ci ratio: 1.163319e-01	ci left: 3.873054e-04	ci right 4.354920e-04	k: 1134	n:2760000
Cons ci ratio: 8.023805e-04	ci left: 8.959887e-01	ci right 8.967083e-01	k: 2473923	n:2760000
KS ci ratio: 1.579236e-01	ci left: 2.055628e-04	ci right 2.411518e-04	k: 615	n:2760000
GTF2I   2760000 perm   3636 sec   (759 perm/sec)   p_kst 2.228261e-04   p_cons 8.963489e-01   p_joint 4.108696e-04

Joint ci ratio: 1.162296e-01	ci left: 3.866082e-04	ci right 4.346628e-04	k: 1136	n:2770000
Cons ci ratio: 8.008849e-04	ci left: 8.960000e-01	ci right 8.967183e-01	k: 2482916	n:2770000
KS ci ratio: 1.577957e-01	ci left: 2.051674e-04	ci right 2.406565e-04	k: 616	n:2770000
GTF2I   2770000 perm   3658 sec   (757 perm/sec)   p_kst 2.223827e-04   p_cons 8.963596e-01   p_joint 4.101083e-04

Joint ci ratio: 1.159748e-01	ci left: 3.869639e-04	ci right 4.349501e-04	k: 1141	n:2780000
Cons ci ratio: 7.994085e-04	ci left: 8.960088e-01	ci right 8.967257e-01	k: 2491902	n:2780000
KS ci ratio: 1.575405e-01	ci left: 2.051204e-04	ci right 2.405386e-04	k: 618	n:2780000
GTF2I   2780000 perm   3679 sec   (756 perm/sec)   p_kst 2.223022e-04   p_cons 8.963676e-01   p_joint 4.104317e-04

Joint ci ratio: 1.158228e-01	ci left: 3.866210e-04	ci right 4.344975e-04	k: 1144	n:2790000
Cons ci ratio: 7.979386e-04	ci left: 8.960178e-01	ci right 8.967334e-01	k: 2500889	n:2790000
KS ci ratio: 1.572866e-01	ci left: 2.050738e-04	ci right 2.404215e-04	k: 620	n:2790000
GTF2I   2790000 perm   3701 sec   (754 perm/sec)   p_kst 2.222222e-04   p_cons 8.963760e-01   p_joint 4.100358e-04

Joint ci ratio: 1.170567e-01	ci left: 3.769183e-04	ci right 4.241249e-04	k: 1120	n:2800000
Cons ci ratio: 7.965703e-04	ci left: 8.960049e-01	ci right 8.967193e-01	k: 2509815	n:2800000
KS ci ratio: 1.572867e-01	ci left: 2.043414e-04	ci right 2.395629e-04	k: 620	n:2800000
GTF2I   2800000 perm   3723 sec   (752 perm/sec)   p_kst 2.214286e-04   p_cons 8.963625e-01   p_joint 4.000000e-04

Joint ci ratio: 1.168484e-01	ci left: 3.769588e-04	ci right 4.240807e-04	k: 1124	n:2810000
Cons ci ratio: 7.951419e-04	ci left: 8.960078e-01	ci right 8.967209e-01	k: 2518785	n:2810000
KS ci ratio: 1.570340e-01	ci left: 2.042980e-04	ci right 2.394501e-04	k: 622	n:2810000
GTF2I   2810000 perm   3744 sec   (751 perm/sec)   p_kst 2.213523e-04   p_cons 8.963648e-01   p_joint 4.000000e-04

Joint ci ratio: 1.164351e-01	ci left: 3.783762e-04	ci right 4.254965e-04	k: 1132	n:2820000
Cons ci ratio: 7.937818e-04	ci left: 8.959965e-01	ci right 8.967084e-01	k: 2527715	n:2820000
KS ci ratio: 1.564076e-01	ci left: 2.052771e-04	ci right 2.404435e-04	k: 627	n:2820000
GTF2I   2820000 perm   3766 sec   (749 perm/sec)   p_kst 2.223404e-04   p_cons 8.963528e-01   p_joint 4.014184e-04

Joint ci ratio: 1.163325e-01	ci left: 3.777253e-04	ci right 4.247202e-04	k: 1134	n:2830000
Cons ci ratio: 7.923518e-04	ci left: 8.960033e-01	ci right 8.967139e-01	k: 2536696	n:2830000
KS ci ratio: 1.562832e-01	ci left: 2.048912e-04	ci right 2.399610e-04	k: 628	n:2830000
GTF2I   2830000 perm   3788 sec   (747 perm/sec)   p_kst 2.219081e-04   p_cons 8.963590e-01   p_joint 4.007067e-04

Joint ci ratio: 1.161280e-01	ci left: 3.777628e-04	ci right 4.246741e-04	k: 1138	n:2840000
Cons ci ratio: 7.909175e-04	ci left: 8.960129e-01	ci right 8.967222e-01	k: 2545685	n:2840000
KS ci ratio: 1.559118e-01	ci left: 2.051849e-04	ci right 2.402137e-04	k: 631	n:2840000
GTF2I   2840000 perm   3811 sec   (745 perm/sec)   p_kst 2.221831e-04   p_cons 8.963680e-01   p_joint 4.007042e-04

Joint ci ratio: 1.158739e-01	ci left: 3.781408e-04	ci right 4.249893e-04	k: 1143	n:2850000
Cons ci ratio: 7.895640e-04	ci left: 8.960052e-01	ci right 8.967133e-01	k: 2554625	n:2850000
KS ci ratio: 1.556657e-01	ci left: 2.051393e-04	ci right 2.400999e-04	k: 633	n:2850000
GTF2I   2850000 perm   3833 sec   (744 perm/sec)   p_kst 2.221053e-04   p_cons 8.963596e-01   p_joint 4.010526e-04

Joint ci ratio: 1.156719e-01	ci left: 3.781767e-04	ci right 4.249424e-04	k: 1147	n:2860000
Cons ci ratio: 7.881700e-04	ci left: 8.960088e-01	ci right 8.967156e-01	k: 2563597	n:2860000
KS ci ratio: 1.554208e-01	ci left: 2.050941e-04	ci right 2.399869e-04	k: 635	n:2860000
GTF2I   2860000 perm   3855 sec   (742 perm/sec)   p_kst 2.220280e-04   p_cons 8.963626e-01   p_joint 4.010490e-04

Joint ci ratio: 1.164355e-01	ci left: 3.717842e-04	ci right 4.180837e-04	k: 1132	n:2870000
Cons ci ratio: 7.868453e-04	ci left: 8.959977e-01	ci right 8.967033e-01	k: 2572527	n:2870000
KS ci ratio: 1.554209e-01	ci left: 2.043795e-04	ci right 2.391507e-04	k: 635	n:2870000
GTF2I   2870000 perm   3878 sec   (740 perm/sec)   p_kst 2.212544e-04   p_cons 8.963509e-01   p_joint 3.944251e-04

Joint ci ratio: 1.162305e-01	ci left: 3.718418e-04	ci right 4.180613e-04	k: 1136	n:2880000
Cons ci ratio: 7.854436e-04	ci left: 8.960064e-01	ci right 8.967108e-01	k: 2581514	n:2880000
KS ci ratio: 1.551771e-01	ci left: 2.043373e-04	ci right 2.390417e-04	k: 637	n:2880000
GTF2I   2880000 perm   3900 sec   (738 perm/sec)   p_kst 2.211806e-04   p_cons 8.963590e-01   p_joint 3.944444e-04

Joint ci ratio: 1.160266e-01	ci left: 3.718990e-04	ci right 4.180390e-04	k: 1140	n:2890000
Cons ci ratio: 7.840347e-04	ci left: 8.960186e-01	ci right 8.967218e-01	k: 2590511	n:2890000
KS ci ratio: 1.548135e-01	ci left: 2.046281e-04	ci right 2.392929e-04	k: 640	n:2890000
GTF2I   2890000 perm   3923 sec   (737 perm/sec)   p_kst 2.214533e-04   p_cons 8.963706e-01   p_joint 3.944637e-04

Joint ci ratio: 1.158237e-01	ci left: 3.719559e-04	ci right 4.180168e-04	k: 1144	n:2900000
Cons ci ratio: 7.826987e-04	ci left: 8.960152e-01	ci right 8.967171e-01	k: 2599463	n:2900000
KS ci ratio: 1.546929e-01	ci left: 2.042539e-04	ci right 2.388259e-04	k: 641	n:2900000
GTF2I   2900000 perm   3945 sec   (735 perm/sec)   p_kst 2.210345e-04   p_cons 8.963666e-01   p_joint 3.944828e-04

Joint ci ratio: 1.156723e-01	ci left: 3.716788e-04	ci right 4.176411e-04	k: 1147	n:2910000
Cons ci ratio: 7.813537e-04	ci left: 8.960156e-01	ci right 8.967163e-01	k: 2608426	n:2910000
KS ci ratio: 1.545726e-01	ci left: 2.038824e-04	ci right 2.383621e-04	k: 642	n:2910000
GTF2I   2910000 perm   3968 sec   (733 perm/sec)   p_kst 2.206186e-04   p_cons 8.963663e-01   p_joint 3.941581e-04

Joint ci ratio: 1.154713e-01	ci left: 3.717362e-04	ci right 4.176202e-04	k: 1151	n:2920000
Cons ci ratio: 7.800501e-04	ci left: 8.960077e-01	ci right 8.967073e-01	k: 2617365	n:2920000
KS ci ratio: 1.545727e-01	ci left: 2.031841e-04	ci right 2.375458e-04	k: 642	n:2920000
GTF2I   2920000 perm   3990 sec   (732 perm/sec)   p_kst 2.198630e-04   p_cons 8.963579e-01   p_joint 3.941781e-04

Joint ci ratio: 1.092025e-01	ci left: 4.155812e-04	ci right 4.639134e-04	k: 1287	n:2930000
Cons ci ratio: 7.787730e-04	ci left: 8.959951e-01	ci right 8.966935e-01	k: 2626290	n:2930000
KS ci ratio: 1.543328e-01	ci left: 2.031469e-04	ci right 2.374440e-04	k: 644	n:2930000
GTF2I   2930000 perm   4013 sec   (730 perm/sec)   p_kst 2.197952e-04   p_cons 8.963447e-01   p_joint 4.392491e-04

Joint ci ratio: 1.088229e-01	ci left: 4.171454e-04	ci right 4.654801e-04	k: 1296	n:2940000
Cons ci ratio: 7.773897e-04	ci left: 8.960095e-01	ci right 8.967067e-01	k: 2635294	n:2940000
KS ci ratio: 1.537380e-01	ci left: 2.040910e-04	ci right 2.384026e-04	k: 649	n:2940000
GTF2I   2940000 perm   4036 sec   (729 perm/sec)   p_kst 2.207483e-04   p_cons 8.963585e-01   p_joint 4.408163e-04

Joint ci ratio: 1.086137e-01	ci left: 4.173802e-04	ci right 4.656431e-04	k: 1301	n:2950000
Cons ci ratio: 7.760661e-04	ci left: 8.960113e-01	ci right 8.967073e-01	k: 2644261	n:2950000
KS ci ratio: 1.532671e-01	ci left: 2.047031e-04	ci right 2.390024e-04	k: 653	n:2950000
GTF2I   2950000 perm   4058 sec   (727 perm/sec)   p_kst 2.213559e-04   p_cons 8.963597e-01   p_joint 4.410169e-04

Joint ci ratio: 1.082815e-01	ci left: 4.185995e-04	ci right 4.668460e-04	k: 1309	n:2960000
Cons ci ratio: 7.747268e-04	ci left: 8.960184e-01	ci right 8.967132e-01	k: 2653244	n:2960000
KS ci ratio: 1.530333e-01	ci left: 2.046613e-04	ci right 2.388965e-04	k: 655	n:2960000
GTF2I   2960000 perm   4081 sec   (725 perm/sec)   p_kst 2.212838e-04   p_cons 8.963662e-01   p_joint 4.422297e-04

Joint ci ratio: 1.081577e-01	ci left: 4.181729e-04	ci right 4.663116e-04	k: 1312	n:2970000
Cons ci ratio: 7.733256e-04	ci left: 8.960421e-01	ci right 8.967356e-01	k: 2662276	n:2970000
KS ci ratio: 1.528006e-01	ci left: 2.046198e-04	ci right 2.387913e-04	k: 657	n:2970000
GTF2I   2970000 perm   4104 sec   (724 perm/sec)   p_kst 2.212121e-04   p_cons 8.963892e-01   p_joint 4.417508e-04

Joint ci ratio: 1.079524e-01	ci left: 4.184021e-04	ci right 4.664699e-04	k: 1317	n:2980000
Cons ci ratio: 7.720547e-04	ci left: 8.960360e-01	ci right 8.967284e-01	k: 2671220	n:2980000
KS ci ratio: 1.523382e-01	ci left: 2.052242e-04	ci right 2.393835e-04	k: 661	n:2980000
GTF2I   2980000 perm   4127 sec   (722 perm/sec)   p_kst 2.218121e-04   p_cons 8.963826e-01   p_joint 4.419463e-04

Joint ci ratio: 1.094583e-01	ci left: 4.052898e-04	ci right 4.525427e-04	k: 1281	n:2990000
Cons ci ratio: 7.707901e-04	ci left: 8.960299e-01	ci right 8.967212e-01	k: 2680164	n:2990000
KS ci ratio: 1.519941e-01	ci left: 2.055030e-04	ci right 2.396244e-04	k: 664	n:2990000
GTF2I   2990000 perm   4150 sec   (720 perm/sec)   p_kst 2.220736e-04   p_cons 8.963759e-01   p_joint 4.284281e-04

Joint ci ratio: 1.091607e-01	ci left: 4.062084e-04	ci right 4.534313e-04	k: 1288	n:3000000
Cons ci ratio: 7.694626e-04	ci left: 8.960406e-01	ci right 8.967306e-01	k: 2689158	n:3000000
KS ci ratio: 1.513130e-01	ci left: 2.067421e-04	ci right 2.409014e-04	k: 670	n:3000000
GTF2I   3000000 perm   4173 sec   (719 perm/sec)   p_kst 2.233333e-04   p_cons 8.963860e-01   p_joint 4.293333e-04

Joint ci ratio: 1.090339e-01	ci left: 4.058283e-04	ci right 4.529487e-04	k: 1291	n:3010000
Cons ci ratio: 7.680870e-04	ci left: 8.960645e-01	ci right 8.967533e-01	k: 2698192	n:3010000
KS ci ratio: 1.512004e-01	ci left: 2.063749e-04	ci right 2.404459e-04	k: 671	n:3010000
GTF2I   3010000 perm   4197 sec   (717 perm/sec)   p_kst 2.229236e-04   p_cons 8.964093e-01   p_joint 4.289037e-04

Joint ci ratio: 1.089496e-01	ci left: 4.051287e-04	ci right 4.521292e-04	k: 1293	n:3020000
Cons ci ratio: 7.668431e-04	ci left: 8.960581e-01	ci right 8.967458e-01	k: 2707135	n:3020000
KS ci ratio: 1.510880e-01	ci left: 2.060101e-04	ci right 2.399934e-04	k: 672	n:3020000
GTF2I   3020000 perm   4220 sec   (716 perm/sec)   p_kst 2.225166e-04   p_cons 8.964023e-01   p_joint 4.281457e-04

Joint ci ratio: 1.089076e-01	ci left: 4.041127e-04	ci right 4.509761e-04	k: 1294	n:3030000
Cons ci ratio: 7.655481e-04	ci left: 8.960656e-01	ci right 8.967521e-01	k: 2716120	n:3030000
KS ci ratio: 1.509759e-01	ci left: 2.056478e-04	ci right 2.395438e-04	k: 673	n:3030000
GTF2I   3030000 perm   4244 sec   (714 perm/sec)   p_kst 2.221122e-04   p_cons 8.964092e-01   p_joint 4.270627e-04

Joint ci ratio: 1.085727e-01	ci left: 4.053434e-04	ci right 4.521957e-04	k: 1302	n:3040000
Cons ci ratio: 7.643788e-04	ci left: 8.960440e-01	ci right 8.967295e-01	k: 2725017	n:3040000
KS ci ratio: 1.505299e-01	ci left: 2.062375e-04	ci right 2.401212e-04	k: 677	n:3040000
GTF2I   3040000 perm   4267 sec   (712 perm/sec)   p_kst 2.226974e-04   p_cons 8.963872e-01   p_joint 4.282895e-04

Joint ci ratio: 1.083236e-01	ci left: 4.059283e-04	ci right 4.527336e-04	k: 1308	n:3050000
Cons ci ratio: 7.631999e-04	ci left: 8.960263e-01	ci right 8.967107e-01	k: 2733925	n:3050000
KS ci ratio: 1.503084e-01	ci left: 2.061924e-04	ci right 2.400143e-04	k: 679	n:3050000
GTF2I   3050000 perm   4291 sec   (711 perm/sec)   p_kst 2.226230e-04   p_cons 8.963689e-01   p_joint 4.288525e-04

Joint ci ratio: 1.081997e-01	ci left: 4.055556e-04	ci right 4.522610e-04	k: 1311	n:3060000
Cons ci ratio: 7.618844e-04	ci left: 8.960433e-01	ci right 8.967265e-01	k: 2742939	n:3060000
KS ci ratio: 1.503084e-01	ci left: 2.055185e-04	ci right 2.392300e-04	k: 679	n:3060000
GTF2I   3060000 perm   4315 sec   (709 perm/sec)   p_kst 2.218954e-04   p_cons 8.963853e-01   p_joint 4.284314e-04

Joint ci ratio: 1.080351e-01	ci left: 4.055022e-04	ci right 4.521260e-04	k: 1315	n:3070000
Cons ci ratio: 7.605863e-04	ci left: 8.960576e-01	ci right 8.967397e-01	k: 2751945	n:3070000
KS ci ratio: 1.499779e-01	ci left: 2.057896e-04	ci right 2.394646e-04	k: 682	n:3070000
GTF2I   3070000 perm   4338 sec   (708 perm/sec)   p_kst 2.221498e-04   p_cons 8.963990e-01   p_joint 4.283388e-04

Joint ci ratio: 1.078305e-01	ci left: 4.057652e-04	ci right 4.523253e-04	k: 1320	n:3080000
Cons ci ratio: 7.593081e-04	ci left: 8.960686e-01	ci right 8.967495e-01	k: 2760941	n:3080000
KS ci ratio: 1.498683e-01	ci left: 2.054339e-04	ci right 2.390240e-04	k: 683	n:3080000
GTF2I   3080000 perm   4362 sec   (706 perm/sec)   p_kst 2.217532e-04   p_cons 8.964094e-01   p_joint 4.285714e-04

Joint ci ratio: 1.076676e-01	ci left: 4.057117e-04	ci right 4.521908e-04	k: 1324	n:3090000
Cons ci ratio: 7.580905e-04	ci left: 8.960662e-01	ci right 8.967460e-01	k: 2769896	n:3090000
KS ci ratio: 1.495407e-01	ci left: 2.057036e-04	ci right 2.392576e-04	k: 686	n:3090000
GTF2I   3090000 perm   4386 sec   (704 perm/sec)   p_kst 2.220065e-04   p_cons 8.964065e-01   p_joint 4.284790e-04

Joint ci ratio: 1.075459e-01	ci left: 4.053446e-04	ci right 4.517259e-04	k: 1327	n:3100000
Cons ci ratio: 7.568471e-04	ci left: 8.960715e-01	ci right 8.967503e-01	k: 2778875	n:3100000
KS ci ratio: 1.493235e-01	ci left: 2.056611e-04	ci right 2.391551e-04	k: 688	n:3100000
GTF2I   3100000 perm   4410 sec   (703 perm/sec)   p_kst 2.219355e-04   p_cons 8.964113e-01   p_joint 4.280645e-04

Joint ci ratio: 1.073440e-01	ci left: 4.056058e-04	ci right 4.519243e-04	k: 1332	n:3110000
Cons ci ratio: 7.556674e-04	ci left: 8.960627e-01	ci right 8.967404e-01	k: 2787810	n:3110000
KS ci ratio: 1.492153e-01	ci left: 2.053093e-04	ci right 2.387197e-04	k: 689	n:3110000
GTF2I   3110000 perm   4434 sec   (701 perm/sec)   p_kst 2.215434e-04   p_cons 8.964019e-01   p_joint 4.282958e-04

Joint ci ratio: 1.071432e-01	ci left: 4.058653e-04	ci right 4.521214e-04	k: 1337	n:3120000
Cons ci ratio: 7.544737e-04	ci left: 8.960588e-01	ci right 8.967354e-01	k: 2796760	n:3120000
KS ci ratio: 1.487846e-01	ci left: 2.058855e-04	ci right 2.392844e-04	k: 693	n:3120000
GTF2I   3120000 perm   4458 sec   (700 perm/sec)   p_kst 2.221154e-04   p_cons 8.963974e-01   p_joint 4.285256e-04

Joint ci ratio: 1.074652e-01	ci left: 4.020813e-04	ci right 4.480525e-04	k: 1329	n:3130000
Cons ci ratio: 7.532506e-04	ci left: 8.960635e-01	ci right 8.967390e-01	k: 2805737	n:3130000
KS ci ratio: 1.486775e-01	ci left: 2.055353e-04	ci right 2.388512e-04	k: 694	n:3130000
GTF2I   3130000 perm   4482 sec   (698 perm/sec)   p_kst 2.217252e-04   p_cons 8.964016e-01   p_joint 4.246006e-04

Joint ci ratio: 1.073442e-01	ci left: 4.017305e-04	ci right 4.476066e-04	k: 1332	n:3140000
Cons ci ratio: 7.520373e-04	ci left: 8.960672e-01	ci right 8.967416e-01	k: 2814711	n:3140000
KS ci ratio: 1.485707e-01	ci left: 2.051874e-04	ci right 2.384209e-04	k: 695	n:3140000
GTF2I   3140000 perm   4506 sec   (697 perm/sec)   p_kst 2.213376e-04   p_cons 8.964048e-01   p_joint 4.242038e-04

Joint ci ratio: 1.072237e-01	ci left: 4.013820e-04	ci right 4.471636e-04	k: 1335	n:3150000
Cons ci ratio: 7.507863e-04	ci left: 8.960817e-01	ci right 8.967550e-01	k: 2823719	n:3150000
KS ci ratio: 1.483577e-01	ci left: 2.051473e-04	ci right 2.383225e-04	k: 697	n:3150000
GTF2I   3150000 perm   4531 sec   (695 perm/sec)   p_kst 2.212698e-04   p_cons 8.964187e-01   p_joint 4.238095e-04

Joint ci ratio: 1.069837e-01	ci left: 4.019597e-04	ci right 4.476981e-04	k: 1341	n:3160000
Cons ci ratio: 7.495401e-04	ci left: 8.960964e-01	ci right 8.967687e-01	k: 2832728	n:3160000
KS ci ratio: 1.479344e-01	ci left: 2.057171e-04	ci right 2.388810e-04	k: 701	n:3160000
GTF2I   3160000 perm   4555 sec   (694 perm/sec)   p_kst 2.218354e-04   p_cons 8.964329e-01   p_joint 4.243671e-04

Joint ci ratio: 1.068643e-01	ci left: 4.016127e-04	ci right 4.472574e-04	k: 1344	n:3170000
Cons ci ratio: 7.483294e-04	ci left: 8.961038e-01	ci right 8.967750e-01	k: 2841714	n:3170000
KS ci ratio: 1.477241e-01	ci left: 2.056757e-04	ci right 2.387817e-04	k: 703	n:3170000
GTF2I   3170000 perm   4580 sec   (692 perm/sec)   p_kst 2.217666e-04   p_cons 8.964397e-01   p_joint 4.239748e-04

Joint ci ratio: 1.091620e-01	ci left: 3.832152e-04	ci right 4.277656e-04	k: 1288	n:3180000
Cons ci ratio: 7.471941e-04	ci left: 8.960938e-01	ci right 8.967639e-01	k: 2850645	n:3180000
KS ci ratio: 1.475147e-01	ci left: 2.056346e-04	ci right 2.386829e-04	k: 705	n:3180000
GTF2I   3180000 perm   4604 sec   (691 perm/sec)   p_kst 2.216981e-04   p_cons 8.964292e-01   p_joint 4.050314e-04

Joint ci ratio: 1.089930e-01	ci left: 3.832336e-04	ci right 4.277128e-04	k: 1292	n:3190000
Cons ci ratio: 7.460262e-04	ci left: 8.960933e-01	ci right 8.967624e-01	k: 2859606	n:3190000
KS ci ratio: 1.473062e-01	ci left: 2.055938e-04	ci right 2.385848e-04	k: 707	n:3190000
GTF2I   3190000 perm   4629 sec   (689 perm/sec)   p_kst 2.216301e-04   p_cons 8.964282e-01   p_joint 4.050157e-04

Joint ci ratio: 1.087410e-01	ci left: 3.838600e-04	ci right 4.283022e-04	k: 1298	n:3200000
Cons ci ratio: 7.448713e-04	ci left: 8.960909e-01	ci right 8.967590e-01	k: 2868561	n:3200000
KS ci ratio: 1.470986e-01	ci left: 2.055533e-04	ci right 2.384872e-04	k: 709	n:3200000
GTF2I   3200000 perm   4654 sec   (688 perm/sec)   p_kst 2.215625e-04   p_cons 8.964253e-01   p_joint 4.056250e-04

Joint ci ratio: 1.086992e-01	ci left: 3.829672e-04	ci right 4.272880e-04	k: 1299	n:3210000
Cons ci ratio: 7.436817e-04	ci left: 8.960986e-01	ci right 8.967655e-01	k: 2877548	n:3210000
KS ci ratio: 1.469952e-01	ci left: 2.052130e-04	ci right 2.380672e-04	k: 710	n:3210000
GTF2I   3210000 perm   4679 sec   (686 perm/sec)   p_kst 2.211838e-04   p_cons 8.964324e-01   p_joint 4.046729e-04

Joint ci ratio: 1.098033e-01	ci left: 3.739239e-04	ci right 4.176660e-04	k: 1273	n:3220000
Cons ci ratio: 7.425674e-04	ci left: 8.960887e-01	ci right 8.967547e-01	k: 2886479	n:3220000
KS ci ratio: 1.468919e-01	ci left: 2.048749e-04	ci right 2.376499e-04	k: 711	n:3220000
GTF2I   3220000 perm   4704 sec   (684 perm/sec)   p_kst 2.208075e-04   p_cons 8.964220e-01   p_joint 3.953416e-04

Joint ci ratio: 1.095884e-01	ci left: 3.742717e-04	ci right 4.179634e-04	k: 1278	n:3230000
Cons ci ratio: 7.414593e-04	ci left: 8.960786e-01	ci right 8.967436e-01	k: 2895409	n:3230000
KS ci ratio: 1.466861e-01	ci left: 2.048370e-04	ci right 2.375560e-04	k: 713	n:3230000
GTF2I   3230000 perm   4729 sec   (683 perm/sec)   p_kst 2.207430e-04   p_cons 8.964115e-01   p_joint 3.956656e-04

Joint ci ratio: 1.093748e-01	ci left: 3.746175e-04	ci right 4.182588e-04	k: 1283	n:3240000
Cons ci ratio: 7.403328e-04	ci left: 8.960745e-01	ci right 8.967384e-01	k: 2904358	n:3240000
KS ci ratio: 1.462769e-01	ci left: 2.053941e-04	ci right 2.381026e-04	k: 717	n:3240000
GTF2I   3240000 perm   4754 sec   (682 perm/sec)   p_kst 2.212963e-04   p_cons 8.964068e-01   p_joint 3.959877e-04

Joint ci ratio: 1.092473e-01	ci left: 3.743627e-04	ci right 4.179202e-04	k: 1286	n:3250000
Cons ci ratio: 7.391331e-04	ci left: 8.960901e-01	ci right 8.967529e-01	k: 2913371	n:3250000
KS ci ratio: 1.461751e-01	ci left: 2.050586e-04	ci right 2.376889e-04	k: 718	n:3250000
GTF2I   3250000 perm   4779 sec   (680 perm/sec)   p_kst 2.209231e-04   p_cons 8.964218e-01   p_joint 3.956923e-04

Joint ci ratio: 1.091625e-01	ci left: 3.738111e-04	ci right 4.172684e-04	k: 1288	n:3260000
Cons ci ratio: 7.379805e-04	ci left: 8.960951e-01	ci right 8.967569e-01	k: 2922350	n:3260000
KS ci ratio: 1.459723e-01	ci left: 2.050206e-04	ci right 2.375957e-04	k: 720	n:3260000
GTF2I   3260000 perm   4805 sec   (678 perm/sec)   p_kst 2.208589e-04   p_cons 8.964264e-01   p_joint 3.950920e-04

Joint ci ratio: 1.089936e-01	ci left: 3.738578e-04	ci right 4.172490e-04	k: 1292	n:3270000
Cons ci ratio: 7.368516e-04	ci left: 8.960955e-01	ci right 8.967564e-01	k: 2931314	n:3270000
KS ci ratio: 1.457702e-01	ci left: 2.049830e-04	ci right 2.375031e-04	k: 722	n:3270000
GTF2I   3270000 perm   4830 sec   (677 perm/sec)   p_kst 2.207951e-04   p_cons 8.964263e-01   p_joint 3.951070e-04

Joint ci ratio: 1.088674e-01	ci left: 3.736077e-04	ci right 4.169164e-04	k: 1295	n:3280000
Cons ci ratio: 7.357314e-04	ci left: 8.960950e-01	ci right 8.967549e-01	k: 2940275	n:3280000
KS ci ratio: 1.455690e-01	ci left: 2.049456e-04	ci right 2.374109e-04	k: 724	n:3280000
GTF2I   3280000 perm   4855 sec   (676 perm/sec)   p_kst 2.207317e-04   p_cons 8.964253e-01   p_joint 3.948171e-04

Joint ci ratio: 1.086997e-01	ci left: 3.736548e-04	ci right 4.168981e-04	k: 1299	n:3290000
Cons ci ratio: 7.346067e-04	ci left: 8.960970e-01	ci right 8.967558e-01	k: 2949244	n:3290000
KS ci ratio: 1.454688e-01	ci left: 2.046155e-04	ci right 2.370043e-04	k: 725	n:3290000
GTF2I   3290000 perm   4881 sec   (674 perm/sec)   p_kst 2.203647e-04   p_cons 8.964267e-01   p_joint 3.948328e-04

Joint ci ratio: 1.085745e-01	ci left: 3.734069e-04	ci right 4.165685e-04	k: 1302	n:3300000
Cons ci ratio: 7.335207e-04	ci left: 8.960904e-01	ci right 8.967483e-01	k: 2958185	n:3300000
KS ci ratio: 1.452688e-01	ci left: 2.045795e-04	ci right 2.369142e-04	k: 727	n:3300000
GTF2I   3300000 perm   4906 sec   (673 perm/sec)   p_kst 2.203030e-04   p_cons 8.964197e-01   p_joint 3.945455e-04

Joint ci ratio: 1.089938e-01	ci left: 3.693398e-04	ci right 4.122068e-04	k: 1292	n:3310000
Cons ci ratio: 7.324287e-04	ci left: 8.960866e-01	ci right 8.967435e-01	k: 2967135	n:3310000
KS ci ratio: 1.451692e-01	ci left: 2.042525e-04	ci right 2.365116e-04	k: 728	n:3310000
GTF2I   3310000 perm   4932 sec   (671 perm/sec)   p_kst 2.199396e-04   p_cons 8.964154e-01   p_joint 3.903323e-04

Joint ci ratio: 1.089518e-01	ci left: 3.685203e-04	ci right 4.112746e-04	k: 1293	n:3320000
Cons ci ratio: 7.313618e-04	ci left: 8.960777e-01	ci right 8.967336e-01	k: 2976068	n:3320000
KS ci ratio: 1.451692e-01	ci left: 2.036373e-04	ci right 2.357992e-04	k: 728	n:3320000
GTF2I   3320000 perm   4957 sec   (670 perm/sec)   p_kst 2.192771e-04   p_cons 8.964060e-01   p_joint 3.894578e-04

Joint ci ratio: 1.089097e-01	ci left: 3.677058e-04	ci right 4.103480e-04	k: 1294	n:3330000
Cons ci ratio: 7.302180e-04	ci left: 8.960896e-01	ci right 8.967445e-01	k: 2985070	n:3330000
KS ci ratio: 1.451693e-01	ci left: 2.030258e-04	ci right 2.350911e-04	k: 728	n:3330000
GTF2I   3330000 perm   4983 sec   (668 perm/sec)   p_kst 2.186186e-04   p_cons 8.964174e-01   p_joint 3.885886e-04

Joint ci ratio: 1.088258e-01	ci left: 3.671874e-04	ci right 4.097345e-04	k: 1296	n:3340000
Cons ci ratio: 7.291172e-04	ci left: 8.960919e-01	ci right 8.967458e-01	k: 2994040	n:3340000
KS ci ratio: 1.450698e-01	ci left: 2.027065e-04	ci right 2.346975e-04	k: 729	n:3340000
GTF2I   3340000 perm   5009 sec   (667 perm/sec)   p_kst 2.182635e-04   p_cons 8.964192e-01   p_joint 3.880240e-04

Joint ci ratio: 1.087001e-01	ci left: 3.669624e-04	ci right 4.094313e-04	k: 1299	n:3350000
Cons ci ratio: 7.280108e-04	ci left: 8.960968e-01	ci right 8.967497e-01	k: 3003019	n:3350000
KS ci ratio: 1.448715e-01	ci left: 2.026767e-04	ci right 2.346155e-04	k: 731	n:3350000
GTF2I   3350000 perm   5035 sec   (665 perm/sec)   p_kst 2.182090e-04   p_cons 8.964236e-01   p_joint 3.877612e-04

Joint ci ratio: 1.085749e-01	ci left: 3.667389e-04	ci right 4.091299e-04	k: 1302	n:3360000
Cons ci ratio: 7.270003e-04	ci left: 8.960784e-01	ci right 8.967304e-01	k: 3011920	n:3360000
KS ci ratio: 1.446740e-01	ci left: 2.026472e-04	ci right 2.345341e-04	k: 733	n:3360000
GTF2I   3360000 perm   5060 sec   (664 perm/sec)   p_kst 2.181548e-04   p_cons 8.964048e-01   p_joint 3.875000e-04

Joint ci ratio: 1.082844e-01	ci left: 3.676715e-04	ci right 4.100493e-04	k: 1309	n:3370000
Cons ci ratio: 7.259720e-04	ci left: 8.960658e-01	ci right 8.967169e-01	k: 3020840	n:3370000
KS ci ratio: 1.440862e-01	ci left: 2.037620e-04	ci right 2.356828e-04	k: 739	n:3370000
GTF2I   3370000 perm   5085 sec   (663 perm/sec)   p_kst 2.192878e-04   p_cons 8.963917e-01   p_joint 3.884273e-04

Joint ci ratio: 1.079552e-01	ci left: 3.688865e-04	ci right 4.112670e-04	k: 1317	n:3380000
Cons ci ratio: 7.248775e-04	ci left: 8.960714e-01	ci right 8.967214e-01	k: 3029821	n:3380000
KS ci ratio: 1.436983e-01	ci left: 2.043000e-04	ci right 2.362115e-04	k: 743	n:3380000
GTF2I   3380000 perm   5112 sec   (661 perm/sec)   p_kst 2.198225e-04   p_cons 8.963967e-01   p_joint 3.896450e-04

Joint ci ratio: 1.077918e-01	ci left: 3.689465e-04	ci right 4.112656e-04	k: 1321	n:3390000
Cons ci ratio: 7.238076e-04	ci left: 8.960719e-01	ci right 8.967210e-01	k: 3038785	n:3390000
KS ci ratio: 1.434095e-01	ci left: 2.045505e-04	ci right 2.364314e-04	k: 746	n:3390000
GTF2I   3390000 perm   5138 sec   (660 perm/sec)   p_kst 2.200590e-04   p_cons 8.963968e-01   p_joint 3.896755e-04

Joint ci ratio: 1.023938e-01	ci left: 4.088159e-04	ci right 4.532187e-04	k: 1464	n:3400000
Cons ci ratio: 7.227045e-04	ci left: 8.960821e-01	ci right 8.967302e-01	k: 3047782	n:3400000
KS ci ratio: 1.430270e-01	ci left: 2.050832e-04	ci right 2.369546e-04	k: 750	n:3400000
GTF2I   3400000 perm   5163 sec   (658 perm/sec)   p_kst 2.205882e-04   p_cons 8.964065e-01   p_joint 4.305882e-04

Joint ci ratio: 1.023240e-01	ci left: 4.081885e-04	ci right 4.524911e-04	k: 1466	n:3410000
Cons ci ratio: 7.216840e-04	ci left: 8.960723e-01	ci right 8.967194e-01	k: 3056711	n:3410000
KS ci ratio: 1.429319e-01	ci left: 2.047645e-04	ci right 2.365635e-04	k: 751	n:3410000
GTF2I   3410000 perm   5190 sec   (657 perm/sec)   p_kst 2.202346e-04   p_cons 8.963962e-01   p_joint 4.299120e-04

Joint ci ratio: 1.027807e-01	ci left: 4.032912e-04	ci right 4.472695e-04	k: 1453	n:3420000
Cons ci ratio: 7.206145e-04	ci left: 8.960763e-01	ci right 8.967225e-01	k: 3065687	n:3420000
KS ci ratio: 1.426476e-01	ci left: 2.050117e-04	ci right 2.367803e-04	k: 754	n:3420000
GTF2I   3420000 perm   5216 sec   (656 perm/sec)   p_kst 2.204678e-04   p_cons 8.963997e-01   p_joint 4.248538e-04

Joint ci ratio: 1.029936e-01	ci left: 4.004111e-04	ci right 4.441712e-04	k: 1447	n:3430000
Cons ci ratio: 7.195610e-04	ci left: 8.960773e-01	ci right 8.967226e-01	k: 3074653	n:3430000
KS ci ratio: 1.423651e-01	ci left: 2.052574e-04	ci right 2.369958e-04	k: 757	n:3430000
GTF2I   3430000 perm   5242 sec   (654 perm/sec)   p_kst 2.206997e-04   p_cons 8.964003e-01   p_joint 4.218659e-04

Joint ci ratio: 1.026045e-01	ci left: 4.023626e-04	ci right 4.461599e-04	k: 1458	n:3440000
Cons ci ratio: 7.185166e-04	ci left: 8.960772e-01	ci right 8.967216e-01	k: 3083615	n:3440000
KS ci ratio: 1.418049e-01	ci left: 2.063429e-04	ci right 2.381130e-04	k: 763	n:3440000
GTF2I   3440000 perm   5268 sec   (653 perm/sec)   p_kst 2.218023e-04   p_cons 8.963997e-01   p_joint 4.238372e-04

Joint ci ratio: 1.024641e-01	ci left: 4.023261e-04	ci right 4.460558e-04	k: 1462	n:3450000
Cons ci ratio: 7.174846e-04	ci left: 8.960751e-01	ci right 8.967185e-01	k: 3092570	n:3450000
KS ci ratio: 1.417122e-01	ci left: 2.060244e-04	ci right 2.377229e-04	k: 764	n:3450000
GTF2I   3450000 perm   5295 sec   (652 perm/sec)   p_kst 2.214493e-04   p_cons 8.963971e-01   p_joint 4.237681e-04

Joint ci ratio: 1.022894e-01	ci left: 4.025714e-04	ci right 4.462487e-04	k: 1467	n:3460000
Cons ci ratio: 7.165028e-04	ci left: 8.960611e-01	ci right 8.967036e-01	k: 3101484	n:3460000
KS ci ratio: 1.415273e-01	ci left: 2.059865e-04	ci right 2.376344e-04	k: 766	n:3460000
GTF2I   3460000 perm   5321 sec   (650 perm/sec)   p_kst 2.213873e-04   p_cons 8.963827e-01   p_joint 4.239884e-04

Joint ci ratio: 1.022895e-01	ci left: 4.014112e-04	ci right 4.449627e-04	k: 1467	n:3470000
Cons ci ratio: 7.154583e-04	ci left: 8.960645e-01	ci right 8.967061e-01	k: 3110458	n:3470000
KS ci ratio: 1.415273e-01	ci left: 2.053929e-04	ci right 2.369495e-04	k: 766	n:3470000
GTF2I   3470000 perm   5347 sec   (649 perm/sec)   p_kst 2.207493e-04   p_cons 8.963856e-01   p_joint 4.227666e-04

Joint ci ratio: 1.026751e-01	ci left: 3.971778e-04	ci right 4.404422e-04	k: 1456	n:3480000
Cons ci ratio: 7.144272e-04	ci left: 8.960655e-01	ci right 8.967062e-01	k: 3119424	n:3480000
KS ci ratio: 1.415274e-01	ci left: 2.048027e-04	ci right 2.362687e-04	k: 766	n:3480000
GTF2I   3480000 perm   5374 sec   (648 perm/sec)   p_kst 2.201149e-04   p_cons 8.963862e-01   p_joint 4.183908e-04

Joint ci ratio: 1.024994e-01	ci left: 3.974356e-04	ci right 4.406496e-04	k: 1461	n:3490000
Cons ci ratio: 7.133654e-04	ci left: 8.960758e-01	ci right 8.967155e-01	k: 3128422	n:3490000
KS ci ratio: 1.414352e-01	ci left: 2.044922e-04	ci right 2.358883e-04	k: 767	n:3490000
GTF2I   3490000 perm   5400 sec   (646 perm/sec)   p_kst 2.197708e-04   p_cons 8.963960e-01   p_joint 4.186246e-04

Joint ci ratio: 1.024294e-01	ci left: 3.968569e-04	ci right 4.399767e-04	k: 1463	n:3500000
Cons ci ratio: 7.123346e-04	ci left: 8.960791e-01	ci right 8.967179e-01	k: 3137396	n:3500000
KS ci ratio: 1.414353e-01	ci left: 2.039080e-04	ci right 2.352144e-04	k: 767	n:3500000
GTF2I   3500000 perm   5427 sec   (645 perm/sec)   p_kst 2.191429e-04   p_cons 8.963989e-01   p_joint 4.180000e-04

Joint ci ratio: 1.023246e-01	ci left: 3.965590e-04	ci right 4.395998e-04	k: 1466	n:3510000
Cons ci ratio: 7.113409e-04	ci left: 8.960739e-01	ci right 8.967118e-01	k: 3146340	n:3510000
KS ci ratio: 1.412515e-01	ci left: 2.038767e-04	ci right 2.351342e-04	k: 769	n:3510000
GTF2I   3510000 perm   5454 sec   (644 perm/sec)   p_kst 2.190883e-04   p_cons 8.963932e-01   p_joint 4.176638e-04

Joint ci ratio: 9.444157e-02	ci left: 4.660968e-04	ci right 5.125722e-04	k: 1721	n:3520000
Cons ci ratio: 7.103645e-04	ci left: 8.960652e-01	ci right 8.967023e-01	k: 3155272	n:3520000
KS ci ratio: 1.410684e-01	ci left: 2.038456e-04	ci right 2.350544e-04	k: 771	n:3520000
GTF2I   3520000 perm   5484 sec   (642 perm/sec)   p_kst 2.190341e-04   p_cons 8.963841e-01   p_joint 4.889205e-04

Joint ci ratio: 9.435943e-02	ci left: 4.656062e-04	ci right 5.119901e-04	k: 1724	n:3530000
Cons ci ratio: 7.093834e-04	ci left: 8.960589e-01	ci right 8.966951e-01	k: 3164212	n:3530000
KS ci ratio: 1.408860e-01	ci left: 2.038147e-04	ci right 2.349751e-04	k: 773	n:3530000
GTF2I   3530000 perm   5511 sec   (641 perm/sec)   p_kst 2.189802e-04   p_cons 8.963773e-01   p_joint 4.883853e-04

Joint ci ratio: 9.496732e-02	ci left: 4.582233e-04	ci right 5.041821e-04	k: 1702	n:3540000
Cons ci ratio: 7.083826e-04	ci left: 8.960589e-01	ci right 8.966941e-01	k: 3173174	n:3540000
KS ci ratio: 1.407951e-01	ci left: 2.035115e-04	ci right 2.346038e-04	k: 774	n:3540000
GTF2I   3540000 perm   5538 sec   (639 perm/sec)   p_kst 2.186441e-04   p_cons 8.963768e-01   p_joint 4.807910e-04

Joint ci ratio: 9.480045e-02	ci left: 4.585826e-04	ci right 5.044921e-04	k: 1708	n:3550000
Cons ci ratio: 7.074247e-04	ci left: 8.960487e-01	ci right 8.966831e-01	k: 3182100	n:3550000
KS ci ratio: 1.406138e-01	ci left: 2.034818e-04	ci right 2.345261e-04	k: 776	n:3550000
GTF2I   3550000 perm   5565 sec   (638 perm/sec)   p_kst 2.185915e-04   p_cons 8.963662e-01   p_joint 4.811268e-04

Joint ci ratio: 9.466208e-02	ci left: 4.586656e-04	ci right 5.045128e-04	k: 1713	n:3560000
Cons ci ratio: 7.064055e-04	ci left: 8.960557e-01	ci right 8.966892e-01	k: 3191087	n:3560000
KS ci ratio: 1.405234e-01	ci left: 2.031812e-04	ci right 2.341581e-04	k: 777	n:3560000
GTF2I   3560000 perm   5592 sec   (637 perm/sec)   p_kst 2.182584e-04   p_cons 8.963728e-01   p_joint 4.811798e-04

Joint ci ratio: 9.455182e-02	ci left: 4.584748e-04	ci right 5.042465e-04	k: 1717	n:3570000
Cons ci ratio: 7.054130e-04	ci left: 8.960568e-01	ci right 8.966894e-01	k: 3200053	n:3570000
KS ci ratio: 1.404332e-01	ci left: 2.028823e-04	ci right 2.337922e-04	k: 778	n:3570000
GTF2I   3570000 perm   5619 sec   (635 perm/sec)   p_kst 2.179272e-04   p_cons 8.963734e-01   p_joint 4.809524e-04

Joint ci ratio: 9.441453e-02	ci left: 4.585578e-04	ci right 5.042676e-04	k: 1722	n:3580000
Cons ci ratio: 7.044406e-04	ci left: 8.960537e-01	ci right 8.966854e-01	k: 3209004	n:3580000
KS ci ratio: 1.401636e-01	ci left: 2.031242e-04	ci right 2.340065e-04	k: 781	n:3580000
GTF2I   3580000 perm   5647 sec   (634 perm/sec)   p_kst 2.181564e-04   p_cons 8.963698e-01   p_joint 4.810056e-04

Joint ci ratio: 9.430514e-02	ci left: 4.583684e-04	ci right 5.040035e-04	k: 1726	n:3590000
Cons ci ratio: 7.034490e-04	ci left: 8.960567e-01	ci right 8.966875e-01	k: 3217977	n:3590000
KS ci ratio: 1.399847e-01	ci left: 2.030960e-04	ci right 2.339313e-04	k: 783	n:3590000
GTF2I   3590000 perm   5674 sec   (633 perm/sec)   p_kst 2.181058e-04   p_cons 8.963724e-01   p_joint 4.807799e-04

Joint ci ratio: 9.485632e-02	ci left: 4.516709e-04	ci right 4.969166e-04	k: 1706	n:3600000
Cons ci ratio: 7.025267e-04	ci left: 8.960425e-01	ci right 8.966724e-01	k: 3226888	n:3600000
KS ci ratio: 1.397176e-01	ci left: 2.033360e-04	ci right 2.341439e-04	k: 786	n:3600000
GTF2I   3600000 perm   5702 sec   (631 perm/sec)   p_kst 2.183333e-04   p_cons 8.963578e-01   p_joint 4.738889e-04

Joint ci ratio: 9.477310e-02	ci left: 4.512311e-04	ci right 4.963909e-04	k: 1709	n:3610000
Cons ci ratio: 7.015912e-04	ci left: 8.960328e-01	ci right 8.966619e-01	k: 3235815	n:3610000
KS ci ratio: 1.396290e-01	ci left: 2.030401e-04	ci right 2.337820e-04	k: 787	n:3610000
GTF2I   3610000 perm   5729 sec   (630 perm/sec)   p_kst 2.180055e-04   p_cons 8.963476e-01   p_joint 4.734072e-04

Joint ci ratio: 9.471776e-02	ci left: 4.505239e-04	ci right 4.955852e-04	k: 1711	n:3620000
Cons ci ratio: 7.006012e-04	ci left: 8.960386e-01	ci right 8.966668e-01	k: 3244798	n:3620000
KS ci ratio: 1.395405e-01	ci left: 2.027458e-04	ci right 2.334221e-04	k: 788	n:3620000
GTF2I   3620000 perm   5757 sec   (629 perm/sec)   p_kst 2.176796e-04   p_cons 8.963530e-01   p_joint 4.726519e-04

Joint ci ratio: 9.466252e-02	ci left: 4.498207e-04	ci right 4.947840e-04	k: 1713	n:3630000
Cons ci ratio: 6.996402e-04	ci left: 8.960378e-01	ci right 8.966652e-01	k: 3253757	n:3630000
KS ci ratio: 1.394521e-01	ci left: 2.024531e-04	ci right 2.330642e-04	k: 789	n:3630000
GTF2I   3630000 perm   5785 sec   (628 perm/sec)   p_kst 2.173554e-04   p_cons 8.963518e-01   p_joint 4.719008e-04

Joint ci ratio: 9.776472e-02	ci left: 4.198962e-04	ci right 4.633225e-04	k: 1606	n:3640000
Cons ci ratio: 6.986935e-04	ci left: 8.960342e-01	ci right 8.966608e-01	k: 3262706	n:3640000
KS ci ratio: 1.391881e-01	ci left: 2.026924e-04	ci right 2.332768e-04	k: 792	n:3640000
GTF2I   3640000 perm   5813 sec   (626 perm/sec)   p_kst 2.175824e-04   p_cons 8.963478e-01   p_joint 4.412088e-04

Joint ci ratio: 9.761298e-02	ci left: 4.200822e-04	ci right 4.634565e-04	k: 1611	n:3650000
Cons ci ratio: 6.977424e-04	ci left: 8.960329e-01	ci right 8.966586e-01	k: 3271663	n:3650000
KS ci ratio: 1.389255e-01	ci left: 2.029304e-04	ci right 2.334881e-04	k: 795	n:3650000
GTF2I   3650000 perm   5841 sec   (625 perm/sec)   p_kst 2.178082e-04   p_cons 8.963460e-01   p_joint 4.413699e-04

Joint ci ratio: 9.755251e-02	ci left: 4.194675e-04	ci right 4.627500e-04	k: 1613	n:3660000
Cons ci ratio: 6.968371e-04	ci left: 8.960203e-01	ci right 8.966452e-01	k: 3280579	n:3660000
KS ci ratio: 1.389256e-01	ci left: 2.023759e-04	ci right 2.328502e-04	k: 795	n:3660000
GTF2I   3660000 perm   5869 sec   (624 perm/sec)   p_kst 2.172131e-04   p_cons 8.963331e-01   p_joint 4.407104e-04

Joint ci ratio: 9.743186e-02	ci left: 4.193879e-04	ci right 4.626056e-04	k: 1617	n:3670000
Cons ci ratio: 6.958915e-04	ci left: 8.960196e-01	ci right 8.966436e-01	k: 3289538	n:3670000
KS ci ratio: 1.386645e-01	ci left: 2.026136e-04	ci right 2.330615e-04	k: 798	n:3670000
GTF2I   3670000 perm   5897 sec   (622 perm/sec)   p_kst 2.174387e-04   p_cons 8.963319e-01   p_joint 4.405995e-04

Joint ci ratio: 9.740181e-02	ci left: 4.185134e-04	ci right 4.616269e-04	k: 1618	n:3680000
Cons ci ratio: 6.949406e-04	ci left: 8.960213e-01	ci right 8.966444e-01	k: 3298506	n:3680000
KS ci ratio: 1.386646e-01	ci left: 2.020630e-04	ci right 2.324282e-04	k: 798	n:3680000
GTF2I   3680000 perm   5926 sec   (621 perm/sec)   p_kst 2.168478e-04   p_cons 8.963332e-01   p_joint 4.396739e-04

Joint ci ratio: 9.719189e-02	ci left: 4.192300e-04	ci right 4.623190e-04	k: 1625	n:3690000
Cons ci ratio: 6.939774e-04	ci left: 8.960273e-01	ci right 8.966496e-01	k: 3307490	n:3690000
KS ci ratio: 1.383187e-01	ci left: 2.025618e-04	ci right 2.329199e-04	k: 802	n:3690000
GTF2I   3690000 perm   5953 sec   (620 perm/sec)   p_kst 2.173442e-04   p_cons 8.963388e-01   p_joint 4.403794e-04

Joint ci ratio: 9.701304e-02	ci left: 4.196792e-04	ci right 4.627305e-04	k: 1631	n:3700000
Cons ci ratio: 6.931311e-04	ci left: 8.960030e-01	ci right 8.966245e-01	k: 3316362	n:3700000
KS ci ratio: 1.381468e-01	ci left: 2.025362e-04	ci right 2.328496e-04	k: 804	n:3700000
GTF2I   3700000 perm   5982 sec   (619 perm/sec)   p_kst 2.172973e-04   p_cons 8.963141e-01   p_joint 4.408108e-04

Joint ci ratio: 9.680562e-02	ci left: 4.203891e-04	ci right 4.634157e-04	k: 1638	n:3710000
Cons ci ratio: 6.922236e-04	ci left: 8.959961e-01	ci right 8.966168e-01	k: 3325298	n:3710000
KS ci ratio: 1.377197e-01	ci left: 2.032915e-04	ci right 2.336161e-04	k: 809	n:3710000
GTF2I   3710000 perm   6010 sec   (617 perm/sec)   p_kst 2.180593e-04   p_cons 8.963067e-01   p_joint 4.415094e-04

Joint ci ratio: 9.674664e-02	ci left: 4.197836e-04	ci right 4.627206e-04	k: 1640	n:3720000
Cons ci ratio: 6.913236e-04	ci left: 8.959881e-01	ci right 8.966080e-01	k: 3334230	n:3720000
KS ci ratio: 1.376348e-01	ci left: 2.030046e-04	ci right 2.332662e-04	k: 810	n:3720000
GTF2I   3720000 perm   6039 sec   (616 perm/sec)   p_kst 2.177419e-04   p_cons 8.962984e-01   p_joint 4.408602e-04

Joint ci ratio: 9.657024e-02	ci left: 4.202279e-04	ci right 4.631275e-04	k: 1646	n:3730000
Cons ci ratio: 6.903664e-04	ci left: 8.959966e-01	ci right 8.966156e-01	k: 3343223	n:3730000
KS ci ratio: 1.373809e-01	ci left: 2.032369e-04	ci right 2.334728e-04	k: 813	n:3730000
GTF2I   3730000 perm   6067 sec   (615 perm/sec)   p_kst 2.179625e-04   p_cons 8.963064e-01   p_joint 4.412869e-04

Joint ci ratio: 9.645319e-02	ci left: 4.201480e-04	ci right 4.629846e-04	k: 1650	n:3740000
Cons ci ratio: 6.894101e-04	ci left: 8.960058e-01	ci right 8.966240e-01	k: 3352219	n:3740000
KS ci ratio: 1.372125e-01	ci left: 2.032099e-04	ci right 2.334016e-04	k: 815	n:3740000
GTF2I   3740000 perm   6096 sec   (614 perm/sec)   p_kst 2.179144e-04   p_cons 8.963152e-01   p_joint 4.411765e-04

Joint ci ratio: 9.232180e-02	ci left: 4.583447e-04	ci right 5.029659e-04	k: 1801	n:3750000
Cons ci ratio: 6.884569e-04	ci left: 8.960153e-01	ci right 8.966326e-01	k: 3361216	n:3750000
KS ci ratio: 1.370446e-01	ci left: 2.031831e-04	ci right 2.333308e-04	k: 817	n:3750000
GTF2I   3750000 perm   6125 sec   (612 perm/sec)   p_kst 2.178667e-04   p_cons 8.963243e-01   p_joint 4.802667e-04

Joint ci ratio: 9.219398e-02	ci left: 4.584248e-04	ci right 5.029887e-04	k: 1806	n:3760000
Cons ci ratio: 6.875007e-04	ci left: 8.960266e-01	ci right 8.966430e-01	k: 3370220	n:3760000
KS ci ratio: 1.368774e-01	ci left: 2.031564e-04	ci right 2.332604e-04	k: 819	n:3760000
GTF2I   3760000 perm   6153 sec   (611 perm/sec)   p_kst 2.178191e-04   p_cons 8.963351e-01   p_joint 4.803191e-04

Joint ci ratio: 9.201590e-02	ci left: 4.590228e-04	ci right 5.035540e-04	k: 1813	n:3770000
Cons ci ratio: 6.865778e-04	ci left: 8.960298e-01	ci right 8.966455e-01	k: 3379194	n:3770000
KS ci ratio: 1.367108e-01	ci left: 2.031299e-04	ci right 2.331903e-04	k: 821	n:3770000
GTF2I   3770000 perm   6181 sec   (610 perm/sec)   p_kst 2.177719e-04   p_cons 8.963379e-01   p_joint 4.809019e-04

Joint ci ratio: 9.188934e-02	ci left: 4.591008e-04	ci right 5.035750e-04	k: 1818	n:3780000
Cons ci ratio: 6.856831e-04	ci left: 8.960264e-01	ci right 8.966413e-01	k: 3388143	n:3780000
KS ci ratio: 1.365448e-01	ci left: 2.031035e-04	ci right 2.331206e-04	k: 823	n:3780000
GTF2I   3780000 perm   6210 sec   (609 perm/sec)   p_kst 2.177249e-04   p_cons 8.963341e-01   p_joint 4.809524e-04

Joint ci ratio: 9.178849e-02	ci left: 4.589206e-04	ci right 5.033259e-04	k: 1822	n:3790000
Cons ci ratio: 6.847938e-04	ci left: 8.960225e-01	ci right 8.966365e-01	k: 3397090	n:3790000
KS ci ratio: 1.362969e-01	ci left: 2.033321e-04	ci right 2.333241e-04	k: 826	n:3790000
GTF2I   3790000 perm   6239 sec   (608 perm/sec)   p_kst 2.179420e-04   p_cons 8.963298e-01   p_joint 4.807388e-04

Joint ci ratio: 9.158771e-02	ci left: 4.597699e-04	ci right 5.041549e-04	k: 1830	n:3800000
Cons ci ratio: 6.839050e-04	ci left: 8.960194e-01	ci right 8.966326e-01	k: 3406040	n:3800000
KS ci ratio: 1.359684e-01	ci left: 2.038138e-04	ci right 2.337985e-04	k: 830	n:3800000
GTF2I   3800000 perm   6268 sec   (606 perm/sec)   p_kst 2.184211e-04   p_cons 8.963263e-01   p_joint 4.815789e-04

Joint ci ratio: 9.156275e-02	ci left: 4.588196e-04	ci right 5.031002e-04	k: 1831	n:3810000
Cons ci ratio: 6.829377e-04	ci left: 8.960386e-01	ci right 8.966510e-01	k: 3415075	n:3810000
KS ci ratio: 1.359684e-01	ci left: 2.032789e-04	ci right 2.331849e-04	k: 830	n:3810000
GTF2I   3810000 perm   6297 sec   (605 perm/sec)   p_kst 2.178478e-04   p_cons 8.963451e-01   p_joint 4.805774e-04

Joint ci ratio: 9.141317e-02	ci left: 4.591533e-04	ci right 5.033898e-04	k: 1837	n:3820000
Cons ci ratio: 6.820802e-04	ci left: 8.960290e-01	ci right 8.966406e-01	k: 3424000	n:3820000
KS ci ratio: 1.355612e-01	ci left: 2.040112e-04	ci right 2.339278e-04	k: 835	n:3820000
GTF2I   3820000 perm   6326 sec   (604 perm/sec)   p_kst 2.185864e-04   p_cons 8.963351e-01   p_joint 4.808901e-04

Joint ci ratio: 9.123956e-02	ci left: 4.597404e-04	ci right 5.039448e-04	k: 1844	n:3830000
Cons ci ratio: 6.811742e-04	ci left: 8.960335e-01	ci right 8.966443e-01	k: 3432979	n:3830000
KS ci ratio: 1.353186e-01	ci left: 2.042353e-04	ci right 2.341268e-04	k: 838	n:3830000
GTF2I   3830000 perm   6355 sec   (603 perm/sec)   p_kst 2.187990e-04   p_cons 8.963392e-01   p_joint 4.814621e-04

Joint ci ratio: 9.436129e-02	ci left: 4.280178e-04	ci right 4.706580e-04	k: 1724	n:3840000
Cons ci ratio: 6.803023e-04	ci left: 8.960296e-01	ci right 8.966396e-01	k: 3441926	n:3840000
KS ci ratio: 1.352380e-01	ci left: 2.039550e-04	ci right 2.337863e-04	k: 839	n:3840000
GTF2I   3840000 perm   6384 sec   (602 perm/sec)   p_kst 2.184896e-04   p_cons 8.963349e-01   p_joint 4.489583e-04

Joint ci ratio: 9.444355e-02	ci left: 4.261452e-04	ci right 4.686379e-04	k: 1721	n:3850000
Cons ci ratio: 6.794679e-04	ci left: 8.960164e-01	ci right 8.966256e-01	k: 3450837	n:3850000
KS ci ratio: 1.347576e-01	ci left: 2.049311e-04	ci right 2.347901e-04	k: 845	n:3850000
GTF2I   3850000 perm   6413 sec   (600 perm/sec)   p_kst 2.194805e-04   p_cons 8.963213e-01   p_joint 4.470130e-04

Joint ci ratio: 9.471915e-02	ci left: 4.225118e-04	ci right 4.647720e-04	k: 1711	n:3860000
Cons ci ratio: 6.786271e-04	ci left: 8.960058e-01	ci right 8.966143e-01	k: 3459758	n:3860000
KS ci ratio: 1.346780e-01	ci left: 2.046505e-04	ci right 2.344496e-04	k: 846	n:3860000
GTF2I   3860000 perm   6442 sec   (599 perm/sec)   p_kst 2.191710e-04   p_cons 8.963104e-01   p_joint 4.432642e-04

Joint ci ratio: 9.455359e-02	ci left: 4.229337e-04	ci right 4.651581e-04	k: 1717	n:3870000
Cons ci ratio: 6.776999e-04	ci left: 8.960199e-01	ci right 8.966276e-01	k: 3468774	n:3870000
KS ci ratio: 1.342822e-01	ci left: 2.053702e-04	ci right 2.351792e-04	k: 851	n:3870000
GTF2I   3870000 perm   6472 sec   (598 perm/sec)   p_kst 2.198966e-04   p_cons 8.963240e-01   p_joint 4.436693e-04

Joint ci ratio: 9.449863e-02	ci left: 4.223470e-04	ci right 4.644869e-04	k: 1719	n:3880000
Cons ci ratio: 6.768319e-04	ci left: 8.960187e-01	ci right 8.966256e-01	k: 3477731	n:3880000
KS ci ratio: 1.342035e-01	ci left: 2.050900e-04	ci right 2.348395e-04	k: 852	n:3880000
GTF2I   3880000 perm   6502 sec   (597 perm/sec)   p_kst 2.195876e-04   p_cons 8.963224e-01   p_joint 4.430412e-04

Joint ci ratio: 9.441634e-02	ci left: 4.220142e-04	ci right 4.640822e-04	k: 1722	n:3890000
Cons ci ratio: 6.759410e-04	ci left: 8.960247e-01	ci right 8.966308e-01	k: 3486716	n:3890000
KS ci ratio: 1.341249e-01	ci left: 2.048112e-04	ci right 2.345015e-04	k: 853	n:3890000
GTF2I   3890000 perm   6531 sec   (596 perm/sec)   p_kst 2.192802e-04   p_cons 8.963280e-01   p_joint 4.426735e-04

Joint ci ratio: 9.433427e-02	ci left: 4.216832e-04	ci right 4.636797e-04	k: 1725	n:3900000
Cons ci ratio: 6.750834e-04	ci left: 8.960224e-01	ci right 8.966278e-01	k: 3495669	n:3900000
KS ci ratio: 1.339681e-01	ci left: 2.047817e-04	ci right 2.344302e-04	k: 855	n:3900000
GTF2I   3900000 perm   6560 sec   (594 perm/sec)   p_kst 2.192308e-04   p_cons 8.963254e-01   p_joint 4.423077e-04

Joint ci ratio: 9.427969e-02	ci left: 4.211042e-04	ci right 4.630173e-04	k: 1727	n:3910000
Cons ci ratio: 6.742319e-04	ci left: 8.960194e-01	ci right 8.966240e-01	k: 3504619	n:3910000
KS ci ratio: 1.338900e-01	ci left: 2.045051e-04	ci right 2.340950e-04	k: 856	n:3910000
GTF2I   3910000 perm   6590 sec   (593 perm/sec)   p_kst 2.189258e-04   p_cons 8.963220e-01   p_joint 4.416880e-04

Joint ci ratio: 9.411642e-02	ci left: 4.215245e-04	ci right 4.634028e-04	k: 1733	n:3920000
Cons ci ratio: 6.733281e-04	ci left: 8.960318e-01	ci right 8.966355e-01	k: 3513629	n:3920000
KS ci ratio: 1.337340e-01	ci left: 2.044765e-04	ci right 2.340251e-04	k: 858	n:3920000
GTF2I   3920000 perm   6620 sec   (592 perm/sec)   p_kst 2.188776e-04   p_cons 8.963339e-01   p_joint 4.420918e-04

Joint ci ratio: 9.403512e-02	ci left: 4.211973e-04	ci right 4.630050e-04	k: 1736	n:3930000
Cons ci ratio: 6.724915e-04	ci left: 8.960264e-01	ci right 8.966295e-01	k: 3522570	n:3930000
KS ci ratio: 1.337340e-01	ci left: 2.039562e-04	ci right 2.334296e-04	k: 858	n:3930000
GTF2I   3930000 perm   6649 sec   (591 perm/sec)   p_kst 2.183206e-04   p_cons 8.963282e-01   p_joint 4.417303e-04

Joint ci ratio: 9.387312e-02	ci left: 4.216154e-04	ci right 4.633885e-04	k: 1742	n:3940000
Cons ci ratio: 6.716011e-04	ci left: 8.960369e-01	ci right 8.966391e-01	k: 3531573	n:3940000
KS ci ratio: 1.334237e-01	ci left: 2.044199e-04	ci right 2.338863e-04	k: 862	n:3940000
GTF2I   3940000 perm   6679 sec   (590 perm/sec)   p_kst 2.187817e-04   p_cons 8.963383e-01   p_joint 4.421320e-04

Joint ci ratio: 9.379245e-02	ci left: 4.212896e-04	ci right 4.629927e-04	k: 1745	n:3950000
Cons ci ratio: 6.707983e-04	ci left: 8.960240e-01	ci right 8.966255e-01	k: 3540484	n:3950000
KS ci ratio: 1.333465e-01	ci left: 2.041471e-04	ci right 2.335557e-04	k: 863	n:3950000
GTF2I   3950000 perm   6709 sec   (589 perm/sec)   p_kst 2.184810e-04   p_cons 8.963251e-01   p_joint 4.417722e-04

Joint ci ratio: 9.376564e-02	ci left: 4.204724e-04	ci right 4.620819e-04	k: 1746	n:3960000
Cons ci ratio: 6.699501e-04	ci left: 8.960246e-01	ci right 8.966253e-01	k: 3549448	n:3960000
KS ci ratio: 1.332694e-01	ci left: 2.038757e-04	ci right 2.332269e-04	k: 864	n:3960000
GTF2I   3960000 perm   6739 sec   (588 perm/sec)   p_kst 2.181818e-04   p_cons 8.963253e-01   p_joint 4.409091e-04

Joint ci ratio: 9.360502e-02	ci left: 4.208892e-04	ci right 4.624647e-04	k: 1752	n:3970000
Cons ci ratio: 6.690815e-04	ci left: 8.960317e-01	ci right 8.966317e-01	k: 3558438	n:3970000
KS ci ratio: 1.331925e-01	ci left: 2.036056e-04	ci right 2.328997e-04	k: 865	n:3970000
GTF2I   3970000 perm   6769 sec   (586 perm/sec)   p_kst 2.178841e-04   p_cons 8.963320e-01   p_joint 4.413098e-04

Joint ci ratio: 9.347181e-02	ci left: 4.210586e-04	ci right 4.625884e-04	k: 1757	n:3980000
Cons ci ratio: 6.682552e-04	ci left: 8.960280e-01	ci right 8.966272e-01	k: 3567385	n:3980000
KS ci ratio: 1.331157e-01	ci left: 2.033369e-04	ci right 2.325742e-04	k: 866	n:3980000
GTF2I   3980000 perm   6799 sec   (585 perm/sec)   p_kst 2.175879e-04   p_cons 8.963279e-01   p_joint 4.414573e-04

Joint ci ratio: 9.365859e-02	ci left: 4.182899e-04	ci right 4.596337e-04	k: 1750	n:3990000
Cons ci ratio: 6.674355e-04	ci left: 8.960233e-01	ci right 8.966218e-01	k: 3576328	n:3990000
KS ci ratio: 1.328859e-01	ci left: 2.035542e-04	ci right 2.327682e-04	k: 869	n:3990000
GTF2I   3990000 perm   6829 sec   (584 perm/sec)   p_kst 2.177945e-04   p_cons 8.963228e-01   p_joint 4.385965e-04

Joint ci ratio: 9.349852e-02	ci left: 4.187091e-04	ci right 4.600197e-04	k: 1756	n:4000000
Cons ci ratio: 6.666099e-04	ci left: 8.960211e-01	ci right 8.966188e-01	k: 3585281	n:4000000
KS ci ratio: 1.324300e-01	ci left: 2.044955e-04	ci right 2.337360e-04	k: 875	n:4000000
GTF2I   4000000 perm   6859 sec   (583 perm/sec)   p_kst 2.187500e-04   p_cons 8.963203e-01   p_joint 4.390000e-04

Joint ci ratio: 9.349857e-02	ci left: 4.176649e-04	ci right 4.588725e-04	k: 1756	n:4010000
Cons ci ratio: 6.657810e-04	ci left: 8.960207e-01	ci right 8.966177e-01	k: 3594241	n:4010000
KS ci ratio: 1.324300e-01	ci left: 2.039856e-04	ci right 2.331531e-04	k: 875	n:4010000
GTF2I   4010000 perm   6890 sec   (582 perm/sec)   p_kst 2.182045e-04   p_cons 8.963195e-01   p_joint 4.379052e-04

Joint ci ratio: 9.331284e-02	ci left: 4.183266e-04	ci right 4.595130e-04	k: 1763	n:4020000
Cons ci ratio: 6.649090e-04	ci left: 8.960332e-01	ci right 8.966294e-01	k: 3603253	n:4020000
KS ci ratio: 1.320537e-01	ci left: 2.046808e-04	ci right 2.338580e-04	k: 880	n:4020000
GTF2I   4020000 perm   6920 sec   (581 perm/sec)   p_kst 2.189055e-04   p_cons 8.963316e-01   p_joint 4.385572e-04

Joint ci ratio: 9.320723e-02	ci left: 4.182580e-04	ci right 4.593884e-04	k: 1767	n:4030000
Cons ci ratio: 6.640466e-04	ci left: 8.960439e-01	ci right 8.966394e-01	k: 3612258	n:4030000
KS ci ratio: 1.317549e-01	ci left: 2.051327e-04	ci right 2.343030e-04	k: 884	n:4030000
GTF2I   4030000 perm   6951 sec   (580 perm/sec)   p_kst 2.193548e-04   p_cons 8.963419e-01   p_joint 4.384615e-04

Joint ci ratio: 9.307570e-02	ci left: 4.184315e-04	ci right 4.595178e-04	k: 1772	n:4040000
Cons ci ratio: 6.632529e-04	ci left: 8.960363e-01	ci right 8.966310e-01	k: 3621189	n:4040000
KS ci ratio: 1.315321e-01	ci left: 2.053431e-04	ci right 2.344901e-04	k: 887	n:4040000
GTF2I   4040000 perm   6981 sec   (579 perm/sec)   p_kst 2.195545e-04   p_cons 8.963339e-01   p_joint 4.386139e-04

Joint ci ratio: 9.302328e-02	ci left: 4.178806e-04	ci right 4.588885e-04	k: 1774	n:4050000
Cons ci ratio: 6.624893e-04	ci left: 8.960210e-01	ci right 8.966150e-01	k: 3630089	n:4050000
KS ci ratio: 1.314581e-01	ci left: 2.050748e-04	ci right 2.341661e-04	k: 888	n:4050000
GTF2I   4050000 perm   7011 sec   (578 perm/sec)   p_kst 2.192593e-04   p_cons 8.963183e-01   p_joint 4.380247e-04

Joint ci ratio: 8.969762e-02	ci left: 4.491028e-04	ci right 4.915164e-04	k: 1908	n:4060000
Cons ci ratio: 6.616801e-04	ci left: 8.960193e-01	ci right 8.966126e-01	k: 3639044	n:4060000
KS ci ratio: 1.312369e-01	ci left: 2.052843e-04	ci right 2.343525e-04	k: 891	n:4060000
GTF2I   4060000 perm   7042 sec   (577 perm/sec)   p_kst 2.194581e-04   p_cons 8.963163e-01   p_joint 4.699507e-04

Joint ci ratio: 8.960380e-02	ci left: 4.489601e-04	ci right 4.913136e-04	k: 1912	n:4070000
Cons ci ratio: 6.608913e-04	ci left: 8.960128e-01	ci right 8.966054e-01	k: 3647979	n:4070000
KS ci ratio: 1.311634e-01	ci left: 2.050176e-04	ci right 2.340305e-04	k: 892	n:4070000
GTF2I   4070000 perm   7073 sec   (575 perm/sec)   p_kst 2.191646e-04   p_cons 8.963093e-01   p_joint 4.697789e-04

Joint ci ratio: 8.948693e-02	ci left: 4.490578e-04	ci right 4.913623e-04	k: 1917	n:4080000
Cons ci ratio: 6.600505e-04	ci left: 8.960217e-01	ci right 8.966135e-01	k: 3656977	n:4080000
KS ci ratio: 1.309436e-01	ci left: 2.052263e-04	ci right 2.342163e-04	k: 895	n:4080000
GTF2I   4080000 perm   7104 sec   (574 perm/sec)   p_kst 2.193627e-04   p_cons 8.963179e-01   p_joint 4.698529e-04

Joint ci ratio: 8.934727e-02	ci left: 4.493940e-04	ci right 4.916607e-04	k: 1923	n:4090000
Cons ci ratio: 6.592519e-04	ci left: 8.960196e-01	ci right 8.966107e-01	k: 3665930	n:4090000
KS ci ratio: 1.307249e-01	ci left: 2.054340e-04	ci right 2.344011e-04	k: 898	n:4090000
GTF2I   4090000 perm   7135 sec   (573 perm/sec)   p_kst 2.195599e-04   p_cons 8.963154e-01   p_joint 4.701711e-04

Joint ci ratio: 8.485503e-02	ci left: 4.981645e-04	ci right 5.425459e-04	k: 2132	n:4100000
Cons ci ratio: 6.584450e-04	ci left: 8.960206e-01	ci right 8.966110e-01	k: 3674896	n:4100000
KS ci ratio: 1.306523e-01	ci left: 2.051689e-04	ci right 2.340813e-04	k: 899	n:4100000
GTF2I   4100000 perm   7167 sec   (572 perm/sec)   p_kst 2.192683e-04   p_cons 8.963161e-01   p_joint 5.200000e-04

Joint ci ratio: 8.467654e-02	ci left: 4.990958e-04	ci right 5.434620e-04	k: 2141	n:4110000
Cons ci ratio: 6.576531e-04	ci left: 8.960183e-01	ci right 8.966080e-01	k: 3683848	n:4110000
KS ci ratio: 1.303629e-01	ci left: 2.056111e-04	ci right 2.345167e-04	k: 903	n:4110000
GTF2I   4110000 perm   7198 sec   (571 perm/sec)   p_kst 2.197080e-04   p_cons 8.963134e-01   p_joint 5.209246e-04

Joint ci ratio: 8.453850e-02	ci left: 4.995475e-04	ci right 5.438779e-04	k: 2148	n:4120000
Cons ci ratio: 6.569103e-04	ci left: 8.960028e-01	ci right 8.965918e-01	k: 3692746	n:4120000
KS ci ratio: 1.302909e-01	ci left: 2.053469e-04	ci right 2.341981e-04	k: 904	n:4120000
GTF2I   4120000 perm   7229 sec   (570 perm/sec)   p_kst 2.194175e-04   p_cons 8.962976e-01   p_joint 5.213592e-04

Joint ci ratio: 8.432290e-02	ci left: 5.009451e-04	ci right 5.452806e-04	k: 2159	n:4130000
Cons ci ratio: 6.560863e-04	ci left: 8.960111e-01	ci right 8.965994e-01	k: 3701742	n:4130000
KS ci ratio: 1.300039e-01	ci left: 2.057867e-04	ci right 2.346311e-04	k: 908	n:4130000
GTF2I   4130000 perm   7260 sec   (569 perm/sec)   p_kst 2.198547e-04   p_cons 8.963056e-01   p_joint 5.227603e-04

Joint ci ratio: 8.451893e-02	ci left: 4.973706e-04	ci right 5.414971e-04	k: 2149	n:4140000
Cons ci ratio: 6.552961e-04	ci left: 8.960108e-01	ci right 8.965983e-01	k: 3710702	n:4140000
KS ci ratio: 1.297187e-01	ci left: 2.062244e-04	ci right 2.350619e-04	k: 912	n:4140000
GTF2I   4140000 perm   7292 sec   (568 perm/sec)   p_kst 2.202899e-04   p_cons 8.963048e-01   p_joint 5.190821e-04

Joint ci ratio: 8.447968e-02	ci left: 4.966439e-04	ci right 5.406844e-04	k: 2151	n:4150000
Cons ci ratio: 6.545104e-04	ci left: 8.960099e-01	ci right 8.965968e-01	k: 3719660	n:4150000
KS ci ratio: 1.295769e-01	ci left: 2.061938e-04	ci right 2.349930e-04	k: 914	n:4150000
GTF2I   4150000 perm   7323 sec   (567 perm/sec)   p_kst 2.202410e-04   p_cons 8.963036e-01   p_joint 5.183133e-04

Joint ci ratio: 8.438171e-02	ci left: 4.966265e-04	ci right 5.406120e-04	k: 2156	n:4160000
Cons ci ratio: 6.536768e-04	ci left: 8.960235e-01	ci right 8.966096e-01	k: 3728678	n:4160000
KS ci ratio: 1.295062e-01	ci left: 2.059307e-04	ci right 2.346763e-04	k: 915	n:4160000
GTF2I   4160000 perm   7355 sec   (566 perm/sec)   p_kst 2.199519e-04   p_cons 8.963168e-01   p_joint 5.182692e-04

Joint ci ratio: 8.422564e-02	ci left: 4.973136e-04	ci right 5.412745e-04	k: 2164	n:4170000
Cons ci ratio: 6.528918e-04	ci left: 8.960240e-01	ci right 8.966095e-01	k: 3737642	n:4170000
KS ci ratio: 1.290840e-01	ci left: 2.068292e-04	ci right 2.355989e-04	k: 921	n:4170000
GTF2I   4170000 perm   7386 sec   (565 perm/sec)   p_kst 2.208633e-04   p_cons 8.963170e-01   p_joint 5.189448e-04

Joint ci ratio: 8.407042e-02	ci left: 4.979975e-04	ci right 5.419337e-04	k: 2172	n:4180000
Cons ci ratio: 6.520744e-04	ci left: 8.960346e-01	ci right 8.966193e-01	k: 3746648	n:4180000
KS ci ratio: 1.287354e-01	ci left: 2.074920e-04	ci right 2.362700e-04	k: 926	n:4180000
GTF2I   4180000 perm   7418 sec   (564 perm/sec)   p_kst 2.215311e-04   p_cons 8.963273e-01   p_joint 5.196172e-04

Joint ci ratio: 8.393532e-02	ci left: 4.984445e-04	ci right 5.423460e-04	k: 2179	n:4190000
Cons ci ratio: 6.512710e-04	ci left: 8.960421e-01	ci right 8.966261e-01	k: 3755641	n:4190000
KS ci ratio: 1.284585e-01	ci left: 2.079207e-04	ci right 2.366914e-04	k: 930	n:4190000
GTF2I   4190000 perm   7450 sec   (562 perm/sec)   p_kst 2.219570e-04   p_cons 8.963344e-01   p_joint 5.200477e-04

Joint ci ratio: 8.385843e-02	ci left: 4.981901e-04	ci right 5.420271e-04	k: 2183	n:4200000
Cons ci ratio: 6.505121e-04	ci left: 8.960376e-01	ci right 8.966209e-01	k: 3764584	n:4200000
KS ci ratio: 1.283208e-01	ci left: 2.078866e-04	ci right 2.366194e-04	k: 932	n:4200000
GTF2I   4200000 perm   7482 sec   (561 perm/sec)   p_kst 2.219048e-04   p_cons 8.963295e-01   p_joint 5.197619e-04

Joint ci ratio: 8.376261e-02	ci left: 4.981695e-04	ci right 5.419521e-04	k: 2188	n:4210000
Cons ci ratio: 6.497186e-04	ci left: 8.960438e-01	ci right 8.966264e-01	k: 3773572	n:4210000
KS ci ratio: 1.281149e-01	ci left: 2.080825e-04	ci right 2.367928e-04	k: 935	n:4210000
GTF2I   4210000 perm   7514 sec   (560 perm/sec)   p_kst 2.220903e-04   p_cons 8.963354e-01   p_joint 5.197150e-04

Joint ci ratio: 8.364804e-02	ci left: 4.983811e-04	ci right 5.421194e-04	k: 2194	n:4220000
Cons ci ratio: 6.489536e-04	ci left: 8.960427e-01	ci right 8.966246e-01	k: 3782529	n:4220000
KS ci ratio: 1.280466e-01	ci left: 2.078188e-04	ci right 2.364762e-04	k: 936	n:4220000
GTF2I   4220000 perm   7546 sec   (559 perm/sec)   p_kst 2.218009e-04   p_cons 8.963339e-01   p_joint 5.199052e-04

Joint ci ratio: 8.357194e-02	ci left: 4.981287e-04	ci right 5.418032e-04	k: 2198	n:4230000
Cons ci ratio: 6.481327e-04	ci left: 8.960583e-01	ci right 8.966395e-01	k: 3791557	n:4230000
KS ci ratio: 1.279783e-01	ci left: 2.075563e-04	ci right 2.361611e-04	k: 937	n:4230000
GTF2I   4230000 perm   7579 sec   (558 perm/sec)   p_kst 2.215130e-04   p_cons 8.963492e-01   p_joint 5.196217e-04

Joint ci ratio: 8.342031e-02	ci left: 4.988013e-04	ci right 5.424515e-04	k: 2206	n:4240000
Cons ci ratio: 6.474103e-04	ci left: 8.960465e-01	ci right 8.966270e-01	k: 3800469	n:4240000
KS ci ratio: 1.277063e-01	ci left: 2.079801e-04	ci right 2.365777e-04	k: 941	n:4240000
GTF2I   4240000 perm   7611 sec   (557 perm/sec)   p_kst 2.219340e-04   p_cons 8.963370e-01   p_joint 5.202830e-04

Joint ci ratio: 8.330714e-02	ci left: 4.990100e-04	ci right 5.426164e-04	k: 2212	n:4250000
Cons ci ratio: 6.466665e-04	ci left: 8.960416e-01	ci right 8.966214e-01	k: 3809410	n:4250000
KS ci ratio: 1.275709e-01	ci left: 2.079462e-04	ci right 2.365066e-04	k: 943	n:4250000
GTF2I   4250000 perm   7643 sec   (556 perm/sec)   p_kst 2.218824e-04   p_cons 8.963318e-01   p_joint 5.204706e-04

Joint ci ratio: 8.317568e-02	ci left: 4.994476e-04	ci right 5.430200e-04	k: 2219	n:4260000
Cons ci ratio: 6.458771e-04	ci left: 8.960505e-01	ci right 8.966297e-01	k: 3818410	n:4260000
KS ci ratio: 1.273687e-01	ci left: 2.081399e-04	ci right 2.366781e-04	k: 946	n:4260000
GTF2I   4260000 perm   7675 sec   (555 perm/sec)   p_kst 2.220657e-04   p_cons 8.963404e-01   p_joint 5.208920e-04

Joint ci ratio: 8.308217e-02	ci left: 4.994245e-04	ci right 5.429436e-04	k: 2224	n:4270000
Cons ci ratio: 6.451337e-04	ci left: 8.960470e-01	ci right 8.966255e-01	k: 3827357	n:4270000
KS ci ratio: 1.271005e-01	ci left: 2.085594e-04	ci right 2.370904e-04	k: 950	n:4270000
GTF2I   4270000 perm   7708 sec   (554 perm/sec)   p_kst 2.224824e-04   p_cons 8.963365e-01   p_joint 5.208431e-04

Joint ci ratio: 8.300760e-02	ci left: 4.991728e-04	ci right 5.426290e-04	k: 2228	n:4280000
Cons ci ratio: 6.444018e-04	ci left: 8.960410e-01	ci right 8.966188e-01	k: 3836293	n:4280000
KS ci ratio: 1.269005e-01	ci left: 2.087508e-04	ci right 2.372596e-04	k: 953	n:4280000
GTF2I   4280000 perm   7740 sec   (553 perm/sec)   p_kst 2.226636e-04   p_cons 8.963301e-01   p_joint 5.205607e-04

Joint ci ratio: 8.282198e-02	ci left: 5.002919e-04	ci right 5.437435e-04	k: 2238	n:4290000
Cons ci ratio: 6.436400e-04	ci left: 8.960443e-01	ci right 8.966214e-01	k: 3845269	n:4290000
KS ci ratio: 1.265033e-01	ci left: 2.096185e-04	ci right 2.381495e-04	k: 959	n:4290000
GTF2I   4290000 perm   7773 sec   (552 perm/sec)   p_kst 2.235431e-04   p_cons 8.963331e-01   p_joint 5.216783e-04

Joint ci ratio: 8.397443e-02	ci left: 4.852381e-04	ci right 5.279973e-04	k: 2177	n:4300000
Cons ci ratio: 6.428858e-04	ci left: 8.960462e-01	ci right 8.966226e-01	k: 3854239	n:4300000
KS ci ratio: 1.263717e-01	ci left: 2.095814e-04	ci right 2.380755e-04	k: 961	n:4300000
GTF2I   4300000 perm   7805 sec   (551 perm/sec)   p_kst 2.234884e-04   p_cons 8.963347e-01   p_joint 5.062791e-04

Joint ci ratio: 8.385899e-02	ci left: 4.854752e-04	ci right 5.281936e-04	k: 2183	n:4310000
Cons ci ratio: 6.421567e-04	ci left: 8.960415e-01	ci right 8.966173e-01	k: 3863181	n:4310000
KS ci ratio: 1.261751e-01	ci left: 2.097692e-04	ci right 2.382411e-04	k: 964	n:4310000
GTF2I   4310000 perm   7837 sec   (550 perm/sec)   p_kst 2.236659e-04   p_cons 8.963297e-01   p_joint 5.064965e-04

Joint ci ratio: 8.380148e-02	ci left: 4.850313e-04	ci right 5.276799e-04	k: 2186	n:4320000
Cons ci ratio: 6.414092e-04	ci left: 8.960430e-01	ci right 8.966181e-01	k: 3872149	n:4320000
KS ci ratio: 1.261098e-01	ci left: 2.095078e-04	ci right 2.379284e-04	k: 965	n:4320000
GTF2I   4320000 perm   7870 sec   (549 perm/sec)   p_kst 2.233796e-04   p_cons 8.963308e-01   p_joint 5.060185e-04

Joint ci ratio: 8.372496e-02	ci left: 4.848155e-04	ci right 5.274044e-04	k: 2190	n:4330000
Cons ci ratio: 6.406923e-04	ci left: 8.960363e-01	ci right 8.966108e-01	k: 3881082	n:4330000
KS ci ratio: 1.260446e-01	ci left: 2.092476e-04	ci right 2.376172e-04	k: 966	n:4330000
GTF2I   4330000 perm   7903 sec   (548 perm/sec)   p_kst 2.230947e-04   p_cons 8.963238e-01   p_joint 5.057737e-04

Joint ci ratio: 8.364864e-02	ci left: 4.846008e-04	ci right 5.271301e-04	k: 2194	n:4340000
Cons ci ratio: 6.399698e-04	ci left: 8.960319e-01	ci right 8.966058e-01	k: 3890025	n:4340000
KS ci ratio: 1.259795e-01	ci left: 2.089886e-04	ci right 2.373073e-04	k: 967	n:4340000
GTF2I   4340000 perm   7936 sec   (547 perm/sec)   p_kst 2.228111e-04   p_cons 8.963191e-01   p_joint 5.055300e-04

Joint ci ratio: 8.357254e-02	ci left: 4.843871e-04	ci right 5.268571e-04	k: 2198	n:4350000
Cons ci ratio: 6.391667e-04	ci left: 8.960518e-01	ci right 8.966249e-01	k: 3899073	n:4350000
KS ci ratio: 1.257200e-01	ci left: 2.093988e-04	ci right 2.377103e-04	k: 971	n:4350000
GTF2I   4350000 perm   7969 sec   (546 perm/sec)   p_kst 2.232184e-04   p_cons 8.963386e-01   p_joint 5.052874e-04

Joint ci ratio: 8.353459e-02	ci left: 4.837253e-04	ci right 5.261170e-04	k: 2200	n:4360000
Cons ci ratio: 6.384525e-04	ci left: 8.960465e-01	ci right 8.966190e-01	k: 3908012	n:4360000
KS ci ratio: 1.257200e-01	ci left: 2.089185e-04	ci right 2.371651e-04	k: 971	n:4360000
GTF2I   4360000 perm   8002 sec   (545 perm/sec)   p_kst 2.227064e-04   p_cons 8.963330e-01   p_joint 5.045872e-04

Joint ci ratio: 8.343987e-02	ci left: 4.837386e-04	ci right 5.260811e-04	k: 2205	n:4370000
Cons ci ratio: 6.377195e-04	ci left: 8.960475e-01	ci right 8.966193e-01	k: 3916978	n:4370000
KS ci ratio: 1.255909e-01	ci left: 2.088837e-04	ci right 2.370944e-04	k: 973	n:4370000
GTF2I   4370000 perm   8035 sec   (544 perm/sec)   p_kst 2.226545e-04   p_cons 8.963336e-01   p_joint 5.045767e-04

Joint ci ratio: 8.328896e-02	ci left: 4.844226e-04	ci right 5.267446e-04	k: 2213	n:4380000
Cons ci ratio: 6.369695e-04	ci left: 8.960541e-01	ci right 8.966253e-01	k: 3925969	n:4380000
KS ci ratio: 1.253979e-01	ci left: 2.090702e-04	ci right 2.372595e-04	k: 976	n:4380000
GTF2I   4380000 perm   8068 sec   (543 perm/sec)   p_kst 2.228311e-04   p_cons 8.963400e-01   p_joint 5.052511e-04

Joint ci ratio: 8.067022e-02	ci left: 5.158953e-04	ci right 5.594832e-04	k: 2359	n:4390000
Cons ci ratio: 6.362517e-04	ci left: 8.960521e-01	ci right 8.966226e-01	k: 3934922	n:4390000
KS ci ratio: 1.250782e-01	ci left: 2.096973e-04	ci right 2.378937e-04	k: 981	n:4390000
GTF2I   4390000 perm   8101 sec   (542 perm/sec)   p_kst 2.234624e-04   p_cons 8.963376e-01   p_joint 5.373576e-04

Joint ci ratio: 8.089350e-02	ci left: 5.118279e-04	ci right 5.551975e-04	k: 2346	n:4400000
Cons ci ratio: 6.355495e-04	ci left: 8.960462e-01	ci right 8.966160e-01	k: 3943858	n:4400000
KS ci ratio: 1.249510e-01	ci left: 2.096610e-04	ci right 2.378218e-04	k: 983	n:4400000
GTF2I   4400000 perm   8135 sec   (541 perm/sec)   p_kst 2.234091e-04   p_cons 8.963314e-01   p_joint 5.331818e-04

Joint ci ratio: 8.084187e-02	ci left: 5.113338e-04	ci right 5.546325e-04	k: 2349	n:4410000
Cons ci ratio: 6.348590e-04	ci left: 8.960376e-01	ci right 8.966068e-01	k: 3952782	n:4410000
KS ci ratio: 1.248876e-01	ci left: 2.094052e-04	ci right 2.375163e-04	k: 984	n:4410000
GTF2I   4410000 perm   8168 sec   (540 perm/sec)   p_kst 2.231293e-04   p_cons 8.963224e-01   p_joint 5.326531e-04

Joint ci ratio: 8.072172e-02	ci left: 5.117286e-04	ci right 5.549934e-04	k: 2356	n:4420000
Cons ci ratio: 6.341236e-04	ci left: 8.960428e-01	ci right 8.966114e-01	k: 3961767	n:4420000
KS ci ratio: 1.248243e-01	ci left: 2.091507e-04	ci right 2.372123e-04	k: 985	n:4420000
GTF2I   4420000 perm   8202 sec   (539 perm/sec)   p_kst 2.228507e-04   p_cons 8.963274e-01   p_joint 5.330317e-04

Joint ci ratio: 8.063624e-02	ci left: 5.116794e-04	ci right 5.548920e-04	k: 2361	n:4430000
Cons ci ratio: 6.334385e-04	ci left: 8.960340e-01	ci right 8.966020e-01	k: 3970690	n:4430000
KS ci ratio: 1.247611e-01	ci left: 2.088972e-04	ci right 2.369096e-04	k: 986	n:4430000
GTF2I   4430000 perm   8235 sec   (538 perm/sec)   p_kst 2.225734e-04   p_cons 8.963183e-01   p_joint 5.329571e-04

Joint ci ratio: 8.134576e-02	ci left: 5.014796e-04	ci right 5.442212e-04	k: 2320	n:4440000
Cons ci ratio: 6.327279e-04	ci left: 8.960334e-01	ci right 8.966008e-01	k: 3979649	n:4440000
KS ci ratio: 1.245090e-01	ci left: 2.092995e-04	ci right 2.373050e-04	k: 990	n:4440000
GTF2I   4440000 perm   8269 sec   (537 perm/sec)   p_kst 2.229730e-04   p_cons 8.963173e-01   p_joint 5.225225e-04

Joint ci ratio: 8.122335e-02	ci left: 5.018938e-04	ci right 5.446032e-04	k: 2327	n:4450000
Cons ci ratio: 6.320106e-04	ci left: 8.960355e-01	ci right 8.966022e-01	k: 3988620	n:4450000
KS ci ratio: 1.243209e-01	ci left: 2.094824e-04	ci right 2.374668e-04	k: 993	n:4450000
GTF2I   4450000 perm   8302 sec   (536 perm/sec)   p_kst 2.231461e-04   p_cons 8.963191e-01   p_joint 5.229213e-04

Joint ci ratio: 8.110150e-02	ci left: 5.023061e-04	ci right 5.449835e-04	k: 2334	n:4460000
Cons ci ratio: 6.313102e-04	ci left: 8.960333e-01	ci right 8.965994e-01	k: 3997572	n:4460000
KS ci ratio: 1.241338e-01	ci left: 2.096644e-04	ci right 2.376279e-04	k: 996	n:4460000
GTF2I   4460000 perm   8336 sec   (535 perm/sec)   p_kst 2.233184e-04   p_cons 8.963166e-01   p_joint 5.233184e-04

Joint ci ratio: 8.103213e-02	ci left: 5.020591e-04	ci right 5.446773e-04	k: 2338	n:4470000
Cons ci ratio: 6.306106e-04	ci left: 8.960316e-01	ci right 8.965970e-01	k: 4006526	n:4470000
KS ci ratio: 1.240094e-01	ci left: 2.096289e-04	ci right 2.375576e-04	k: 998	n:4470000
GTF2I   4470000 perm   8370 sec   (534 perm/sec)   p_kst 2.232662e-04   p_cons 8.963145e-01   p_joint 5.230425e-04

Joint ci ratio: 8.089388e-02	ci left: 5.026880e-04	ci right 5.452833e-04	k: 2346	n:4480000
Cons ci ratio: 6.299224e-04	ci left: 8.960272e-01	ci right 8.965920e-01	k: 4015468	n:4480000
KS ci ratio: 1.237619e-01	ci left: 2.100262e-04	ci right 2.379479e-04	k: 1002	n:4480000
GTF2I   4480000 perm   8404 sec   (533 perm/sec)   p_kst 2.236607e-04   p_cons 8.963098e-01   p_joint 5.236607e-04

Joint ci ratio: 8.079067e-02	ci left: 5.028777e-04	ci right 5.454322e-04	k: 2352	n:4490000
Cons ci ratio: 6.291905e-04	ci left: 8.960364e-01	ci right 8.966005e-01	k: 4024471	n:4490000
KS ci ratio: 1.237003e-01	ci left: 2.097743e-04	ci right 2.376475e-04	k: 1003	n:4490000
GTF2I   4490000 perm   8438 sec   (532 perm/sec)   p_kst 2.233853e-04   p_cons 8.963187e-01   p_joint 5.238307e-04

Joint ci ratio: 8.068786e-02	ci left: 5.030666e-04	ci right 5.455804e-04	k: 2358	n:4500000
Cons ci ratio: 6.284851e-04	ci left: 8.960384e-01	ci right 8.966020e-01	k: 4033442	n:4500000
KS ci ratio: 1.236387e-01	ci left: 2.095234e-04	ci right 2.373485e-04	k: 1004	n:4500000
GTF2I   4500000 perm   8471 sec   (531 perm/sec)   p_kst 2.231111e-04   p_cons 8.963204e-01   p_joint 5.240000e-04

Joint ci ratio: 8.061955e-02	ci left: 5.028202e-04	ci right 5.452755e-04	k: 2362	n:4510000
Cons ci ratio: 6.277776e-04	ci left: 8.960418e-01	ci right 8.966047e-01	k: 4042419	n:4510000
KS ci ratio: 1.234546e-01	ci left: 2.097035e-04	ci right 2.375080e-04	k: 1007	n:4510000
GTF2I   4510000 perm   8505 sec   (530 perm/sec)   p_kst 2.232816e-04   p_cons 8.963235e-01   p_joint 5.237251e-04

Joint ci ratio: 8.055141e-02	ci left: 5.025749e-04	ci right 5.449719e-04	k: 2366	n:4520000
Cons ci ratio: 6.270852e-04	ci left: 8.960414e-01	ci right 8.966037e-01	k: 4051379	n:4520000
KS ci ratio: 1.233934e-01	ci left: 2.094540e-04	ci right 2.372106e-04	k: 1008	n:4520000
GTF2I   4520000 perm   8539 sec   (529 perm/sec)   p_kst 2.230088e-04   p_cons 8.963228e-01   p_joint 5.234513e-04

Joint ci ratio: 8.050043e-02	ci left: 5.021144e-04	ci right 5.444444e-04	k: 2369	n:4530000
Cons ci ratio: 6.263891e-04	ci left: 8.960428e-01	ci right 8.966044e-01	k: 4060347	n:4530000
KS ci ratio: 1.232713e-01	ci left: 2.094195e-04	ci right 2.371421e-04	k: 1010	n:4530000
GTF2I   4530000 perm   8573 sec   (528 perm/sec)   p_kst 2.229581e-04   p_cons 8.963238e-01   p_joint 5.229581e-04

Joint ci ratio: 8.075658e-02	ci left: 4.977710e-04	ci right 5.398747e-04	k: 2354	n:4540000
Cons ci ratio: 6.256820e-04	ci left: 8.960481e-01	ci right 8.966091e-01	k: 4069333	n:4540000
KS ci ratio: 1.232104e-01	ci left: 2.091717e-04	ci right 2.368468e-04	k: 1011	n:4540000
GTF2I   4540000 perm   8608 sec   (527 perm/sec)   p_kst 2.226872e-04   p_cons 8.963289e-01   p_joint 5.185022e-04

Joint ci ratio: 8.092872e-02	ci left: 4.945236e-04	ci right 5.364460e-04	k: 2344	n:4550000
Cons ci ratio: 6.250290e-04	ci left: 8.960380e-01	ci right 8.965984e-01	k: 4078249	n:4550000
KS ci ratio: 1.230282e-01	ci left: 2.093510e-04	ci right 2.370059e-04	k: 1014	n:4550000
GTF2I   4550000 perm   8643 sec   (526 perm/sec)   p_kst 2.228571e-04   p_cons 8.963185e-01   p_joint 5.151648e-04

Joint ci ratio: 8.113673e-02	ci left: 4.908608e-04	ci right 5.325847e-04	k: 2332	n:4560000
Cons ci ratio: 6.243508e-04	ci left: 8.960361e-01	ci right 8.965959e-01	k: 4087202	n:4560000
KS ci ratio: 1.228467e-01	ci left: 2.095295e-04	ci right 2.371642e-04	k: 1017	n:4560000
GTF2I   4560000 perm   8677 sec   (526 perm/sec)   p_kst 2.230263e-04   p_cons 8.963162e-01   p_joint 5.114035e-04

Joint ci ratio: 8.104993e-02	ci left: 4.908586e-04	ci right 5.325356e-04	k: 2337	n:4570000
Cons ci ratio: 6.236506e-04	ci left: 8.960414e-01	ci right 8.966006e-01	k: 4096188	n:4570000
KS ci ratio: 1.227262e-01	ci left: 2.094952e-04	ci right 2.370963e-04	k: 1019	n:4570000
GTF2I   4570000 perm   8712 sec   (525 perm/sec)   p_kst 2.229759e-04   p_cons 8.963212e-01   p_joint 5.113786e-04

Joint ci ratio: 8.094612e-02	ci left: 4.910704e-04	ci right 5.327094e-04	k: 2343	n:4580000
Cons ci ratio: 6.229695e-04	ci left: 8.960416e-01	ci right 8.966002e-01	k: 4105151	n:4580000
KS ci ratio: 1.226662e-01	ci left: 2.092495e-04	ci right 2.368037e-04	k: 1020	n:4580000
GTF2I   4580000 perm   8746 sec   (524 perm/sec)   p_kst 2.227074e-04   p_cons 8.963212e-01   p_joint 5.115721e-04

Joint ci ratio: 8.087715e-02	ci left: 4.908543e-04	ci right 5.324379e-04	k: 2347	n:4590000
Cons ci ratio: 6.223111e-04	ci left: 8.960358e-01	ci right 8.965938e-01	k: 4114086	n:4590000
KS ci ratio: 1.224265e-01	ci left: 2.096383e-04	ci right 2.371859e-04	k: 1024	n:4590000
GTF2I   4590000 perm   8780 sec   (523 perm/sec)   p_kst 2.230937e-04   p_cons 8.963150e-01   p_joint 5.113290e-04

Joint ci ratio: 8.106741e-02	ci left: 4.874443e-04	ci right 5.288408e-04	k: 2336	n:4600000
Cons ci ratio: 6.216126e-04	ci left: 8.960426e-01	ci right 8.966000e-01	k: 4123079	n:4600000
KS ci ratio: 1.223669e-01	ci left: 2.093933e-04	ci right 2.368944e-04	k: 1025	n:4600000
GTF2I   4600000 perm   8815 sec   (522 perm/sec)   p_kst 2.228261e-04   p_cons 8.963215e-01   p_joint 5.078261e-04

Joint ci ratio: 8.101545e-02	ci left: 4.870245e-04	ci right 5.283576e-04	k: 2339	n:4610000
Cons ci ratio: 6.209592e-04	ci left: 8.960365e-01	ci right 8.965933e-01	k: 4132013	n:4610000
KS ci ratio: 1.222478e-01	ci left: 2.093597e-04	ci right 2.368276e-04	k: 1027	n:4610000
GTF2I   4610000 perm   8850 sec   (521 perm/sec)   p_kst 2.227766e-04   p_cons 8.963152e-01   p_joint 5.073753e-04

Joint ci ratio: 8.094630e-02	ci left: 4.868186e-04	ci right 5.280973e-04	k: 2343	n:4620000
Cons ci ratio: 6.202891e-04	ci left: 8.960362e-01	ci right 8.965923e-01	k: 4140973	n:4620000
KS ci ratio: 1.221884e-01	ci left: 2.091164e-04	ci right 2.365381e-04	k: 1028	n:4620000
GTF2I   4620000 perm   8885 sec   (520 perm/sec)   p_kst 2.225108e-04   p_cons 8.963145e-01   p_joint 5.071429e-04

Joint ci ratio: 8.086011e-02	ci left: 4.868253e-04	ci right 5.280584e-04	k: 2348	n:4630000
Cons ci ratio: 6.195851e-04	ci left: 8.960466e-01	ci right 8.966022e-01	k: 4149983	n:4630000
KS ci ratio: 1.220107e-01	ci left: 2.092929e-04	ci right 2.366949e-04	k: 1031	n:4630000
GTF2I   4630000 perm   8919 sec   (519 perm/sec)   p_kst 2.226782e-04   p_cons 8.963246e-01   p_joint 5.071274e-04

Joint ci ratio: 8.180639e-02	ci left: 4.743747e-04	ci right 5.150459e-04	k: 2294	n:4640000
Cons ci ratio: 6.188922e-04	ci left: 8.960544e-01	ci right 8.966093e-01	k: 4158981	n:4640000
KS ci ratio: 1.219516e-01	ci left: 2.090507e-04	ci right 2.364069e-04	k: 1032	n:4640000
GTF2I   4640000 perm   8955 sec   (518 perm/sec)   p_kst 2.224138e-04   p_cons 8.963321e-01   p_joint 4.943966e-04

Joint ci ratio: 7.982978e-02	ci left: 4.975862e-04	ci right 5.391689e-04	k: 2409	n:4650000
Cons ci ratio: 6.181843e-04	ci left: 8.960673e-01	ci right 8.966216e-01	k: 4168003	n:4650000
KS ci ratio: 1.218337e-01	ci left: 2.090182e-04	ci right 2.363417e-04	k: 1034	n:4650000
GTF2I   4650000 perm   8989 sec   (517 perm/sec)   p_kst 2.223656e-04   p_cons 8.963447e-01   p_joint 5.180645e-04

Joint ci ratio: 7.969759e-02	ci left: 4.982010e-04	ci right 5.397628e-04	k: 2417	n:4660000
Cons ci ratio: 6.175389e-04	ci left: 8.960622e-01	ci right 8.966159e-01	k: 4176941	n:4660000
KS ci ratio: 1.216575e-01	ci left: 2.091938e-04	ci right 2.364979e-04	k: 1037	n:4660000
GTF2I   4660000 perm   9025 sec   (516 perm/sec)   p_kst 2.225322e-04   p_cons 8.963393e-01   p_joint 5.186695e-04

Joint ci ratio: 7.964821e-02	ci left: 4.977637e-04	ci right 5.392622e-04	k: 2420	n:4670000
Cons ci ratio: 6.169217e-04	ci left: 8.960491e-01	ci right 8.966022e-01	k: 4185842	n:4670000
KS ci ratio: 1.215990e-01	ci left: 2.089535e-04	ci right 2.362121e-04	k: 1038	n:4670000
GTF2I   4670000 perm   9060 sec   (515 perm/sec)   p_kst 2.222698e-04   p_cons 8.963259e-01   p_joint 5.182013e-04

Joint ci ratio: 7.958250e-02	ci left: 4.975378e-04	ci right 5.389817e-04	k: 2424	n:4680000
Cons ci ratio: 6.162645e-04	ci left: 8.960487e-01	ci right 8.966013e-01	k: 4194802	n:4680000
KS ci ratio: 1.215990e-01	ci left: 2.085070e-04	ci right 2.357074e-04	k: 1038	n:4680000
GTF2I   4680000 perm   9095 sec   (515 perm/sec)   p_kst 2.217949e-04   p_cons 8.963252e-01   p_joint 5.179487e-04

Joint ci ratio: 7.946788e-02	ci left: 4.979398e-04	ci right 5.393546e-04	k: 2431	n:4690000
Cons ci ratio: 6.155953e-04	ci left: 8.960526e-01	ci right 8.966045e-01	k: 4203782	n:4690000
KS ci ratio: 1.213074e-01	ci left: 2.090961e-04	ci right 2.363033e-04	k: 1043	n:4690000
GTF2I   4690000 perm   9131 sec   (514 perm/sec)   p_kst 2.223881e-04   p_cons 8.963288e-01   p_joint 5.183369e-04

Joint ci ratio: 7.938631e-02	ci left: 4.979231e-04	ci right 5.392920e-04	k: 2436	n:4700000
Cons ci ratio: 6.148903e-04	ci left: 8.960679e-01	ci right 8.966193e-01	k: 4212816	n:4700000
KS ci ratio: 1.212494e-01	ci left: 2.088575e-04	ci right 2.360197e-04	k: 1044	n:4700000
GTF2I   4700000 perm   9166 sec   (513 perm/sec)   p_kst 2.221277e-04   p_cons 8.963438e-01   p_joint 5.182979e-04

Joint ci ratio: 7.922390e-02	ci left: 4.989470e-04	ci right 5.403123e-04	k: 2446	n:4710000
Cons ci ratio: 6.142179e-04	ci left: 8.960741e-01	ci right 8.966248e-01	k: 4221807	n:4710000
KS ci ratio: 1.210757e-01	ci left: 2.090317e-04	ci right 2.361749e-04	k: 1047	n:4710000
GTF2I   4710000 perm   9203 sec   (512 perm/sec)   p_kst 2.222930e-04   p_cons 8.963497e-01   p_joint 5.193206e-04

Joint ci ratio: 8.011329e-02	ci left: 4.866770e-04	ci right 5.274991e-04	k: 2392	n:4720000
Cons ci ratio: 6.135714e-04	ci left: 8.960730e-01	ci right 8.966231e-01	k: 4230764	n:4720000
KS ci ratio: 1.207879e-01	ci left: 2.096162e-04	ci right 2.367658e-04	k: 1052	n:4720000
GTF2I   4720000 perm   9242 sec   (511 perm/sec)   p_kst 2.228814e-04   p_cons 8.963483e-01   p_joint 5.067797e-04

Joint ci ratio: 7.999635e-02	ci left: 4.870984e-04	ci right 5.278934e-04	k: 2399	n:4730000
Cons ci ratio: 6.129458e-04	ci left: 8.960662e-01	ci right 8.966158e-01	k: 4239694	n:4730000
KS ci ratio: 1.207306e-01	ci left: 2.093780e-04	ci right 2.364831e-04	k: 1053	n:4730000
GTF2I   4730000 perm   9283 sec   (510 perm/sec)   p_kst 2.226216e-04   p_cons 8.963412e-01   p_joint 5.071882e-04

Joint ci ratio: 7.983017e-02	ci left: 4.881383e-04	ci right 5.289316e-04	k: 2409	n:4740000
Cons ci ratio: 6.123089e-04	ci left: 8.960634e-01	ci right 8.966125e-01	k: 4248643	n:4740000
KS ci ratio: 1.203316e-01	ci left: 2.103686e-04	ci right 2.375055e-04	k: 1060	n:4740000
GTF2I   4740000 perm   9324 sec   (508 perm/sec)   p_kst 2.236287e-04   p_cons 8.963382e-01   p_joint 5.082278e-04

Joint ci ratio: 7.964856e-02	ci left: 4.893803e-04	ci right 5.301800e-04	k: 2420	n:4750000
Cons ci ratio: 6.116754e-04	ci left: 8.960603e-01	ci right 8.966087e-01	k: 4257590	n:4750000
KS ci ratio: 1.201618e-01	ci left: 2.105383e-04	ci right 2.376560e-04	k: 1063	n:4750000
GTF2I   4750000 perm   9366 sec   (507 perm/sec)   p_kst 2.237895e-04   p_cons 8.963347e-01   p_joint 5.094737e-04

Joint ci ratio: 7.958285e-02	ci left: 4.891758e-04	ci right 5.299232e-04	k: 2424	n:4760000
Cons ci ratio: 6.110342e-04	ci left: 8.960601e-01	ci right 8.966079e-01	k: 4266551	n:4760000
KS ci ratio: 1.201054e-01	ci left: 2.102997e-04	ci right 2.373731e-04	k: 1064	n:4760000
GTF2I   4760000 perm   9406 sec   (506 perm/sec)   p_kst 2.235294e-04   p_cons 8.963342e-01   p_joint 5.092437e-04

Joint ci ratio: 8.006330e-02	ci left: 4.821919e-04	ci right 5.226114e-04	k: 2395	n:4770000
Cons ci ratio: 6.104122e-04	ci left: 8.960546e-01	ci right 8.966019e-01	k: 4275487	n:4770000
KS ci ratio: 1.199366e-01	ci left: 2.104689e-04	ci right 2.375233e-04	k: 1067	n:4770000
GTF2I   4770000 perm   9447 sec   (505 perm/sec)   p_kst 2.236897e-04   p_cons 8.963285e-01   p_joint 5.020964e-04

Joint ci ratio: 8.001325e-02	ci left: 4.817981e-04	ci right 5.221582e-04	k: 2398	n:4780000
Cons ci ratio: 6.097928e-04	ci left: 8.960490e-01	ci right 8.965957e-01	k: 4284422	n:4780000
KS ci ratio: 1.198245e-01	ci left: 2.104345e-04	ci right 2.374573e-04	k: 1069	n:4780000
GTF2I   4780000 perm   9488 sec   (504 perm/sec)   p_kst 2.236402e-04   p_cons 8.963226e-01   p_joint 5.016736e-04

Joint ci ratio: 7.983038e-02	ci left: 4.830429e-04	ci right 5.234104e-04	k: 2409	n:4790000
Cons ci ratio: 6.091437e-04	ci left: 8.960530e-01	ci right 8.965992e-01	k: 4293403	n:4790000
KS ci ratio: 1.194899e-01	ci left: 2.112103e-04	ci right 2.382517e-04	k: 1075	n:4790000
GTF2I   4790000 perm   9529 sec   (503 perm/sec)   p_kst 2.244259e-04   p_cons 8.963263e-01   p_joint 5.029228e-04

Joint ci ratio: 7.974770e-02	ci left: 4.830574e-04	ci right 5.233824e-04	k: 2414	n:4800000
Cons ci ratio: 6.084838e-04	ci left: 8.960609e-01	ci right 8.966065e-01	k: 4302403	n:4800000
KS ci ratio: 1.193236e-01	ci left: 2.113766e-04	ci right 2.383990e-04	k: 1078	n:4800000
GTF2I   4800000 perm   9571 sec   (502 perm/sec)   p_kst 2.245833e-04   p_cons 8.963340e-01   p_joint 5.029167e-04

Joint ci ratio: 7.969823e-02	ci left: 4.826644e-04	ci right 5.229305e-04	k: 2417	n:4810000
Cons ci ratio: 6.078090e-04	ci left: 8.960740e-01	ci right 8.966190e-01	k: 4311428	n:4810000
KS ci ratio: 1.192684e-01	ci left: 2.111388e-04	ci right 2.381175e-04	k: 1079	n:4810000
GTF2I   4810000 perm   9613 sec   (500 perm/sec)   p_kst 2.243243e-04   p_cons 8.963468e-01   p_joint 5.024948e-04

Joint ci ratio: 7.963240e-02	ci left: 4.824764e-04	ci right 5.226920e-04	k: 2421	n:4820000
Cons ci ratio: 6.071622e-04	ci left: 8.960792e-01	ci right 8.966236e-01	k: 4320415	n:4820000
KS ci ratio: 1.191581e-01	ci left: 2.111033e-04	ci right 2.380507e-04	k: 1081	n:4820000
GTF2I   4820000 perm   9655 sec   (499 perm/sec)   p_kst 2.242739e-04   p_cons 8.963517e-01   p_joint 5.022822e-04

Joint ci ratio: 7.955033e-02	ci left: 4.824920e-04	ci right 5.226656e-04	k: 2426	n:4830000
Cons ci ratio: 6.065337e-04	ci left: 8.960794e-01	ci right 8.966232e-01	k: 4329378	n:4830000
KS ci ratio: 1.190481e-01	ci left: 2.110680e-04	ci right 2.379843e-04	k: 1083	n:4830000
GTF2I   4830000 perm   9696 sec   (498 perm/sec)   p_kst 2.242236e-04   p_cons 8.963516e-01   p_joint 5.022774e-04

Joint ci ratio: 7.941952e-02	ci left: 4.831152e-04	ci right 5.232714e-04	k: 2434	n:4840000
Cons ci ratio: 6.059227e-04	ci left: 8.960748e-01	ci right 8.966181e-01	k: 4338318	n:4840000
KS ci ratio: 1.187745e-01	ci left: 2.116343e-04	ci right 2.385564e-04	k: 1088	n:4840000
GTF2I   4840000 perm   9738 sec   (497 perm/sec)   p_kst 2.247934e-04   p_cons 8.963467e-01   p_joint 5.028926e-04

Joint ci ratio: 7.930560e-02	ci left: 4.835337e-04	ci right 5.236644e-04	k: 2441	n:4850000
Cons ci ratio: 6.053061e-04	ci left: 8.960725e-01	ci right 8.966153e-01	k: 4347269	n:4850000
KS ci ratio: 1.185569e-01	ci left: 2.119982e-04	ci right 2.389137e-04	k: 1092	n:4850000
GTF2I   4850000 perm   9781 sec   (496 perm/sec)   p_kst 2.251546e-04   p_cons 8.963441e-01   p_joint 5.032990e-04

Joint ci ratio: 7.927316e-02	ci left: 4.829422e-04	ci right 5.230066e-04	k: 2443	n:4860000
Cons ci ratio: 6.047114e-04	ci left: 8.960640e-01	ci right 8.966063e-01	k: 4356190	n:4860000
KS ci ratio: 1.185028e-01	ci left: 2.117616e-04	ci right 2.386340e-04	k: 1093	n:4860000
GTF2I   4860000 perm   9823 sec   (495 perm/sec)   p_kst 2.248971e-04   p_cons 8.963354e-01   p_joint 5.026749e-04

Joint ci ratio: 7.946864e-02	ci left: 4.795353e-04	ci right 5.194198e-04	k: 2431	n:4870000
Cons ci ratio: 6.040878e-04	ci left: 8.960651e-01	ci right 8.966067e-01	k: 4365157	n:4870000
KS ci ratio: 1.183946e-01	ci left: 2.117253e-04	ci right 2.385668e-04	k: 1095	n:4870000
GTF2I   4870000 perm   9865 sec   (494 perm/sec)   p_kst 2.248460e-04   p_cons 8.963361e-01   p_joint 4.991786e-04

Joint ci ratio: 7.935450e-02	ci left: 4.799586e-04	ci right 5.198183e-04	k: 2438	n:4880000
Cons ci ratio: 6.034502e-04	ci left: 8.960710e-01	ci right 8.966121e-01	k: 4374148	n:4880000
KS ci ratio: 1.180718e-01	ci left: 2.124846e-04	ci right 2.393438e-04	k: 1101	n:4880000
GTF2I   4880000 perm   9907 sec   (493 perm/sec)   p_kst 2.256148e-04   p_cons 8.963418e-01   p_joint 4.995902e-04

Joint ci ratio: 7.928952e-02	ci left: 4.797789e-04	ci right 5.195895e-04	k: 2442	n:4890000
Cons ci ratio: 6.028457e-04	ci left: 8.960673e-01	ci right 8.966079e-01	k: 4383092	n:4890000
KS ci ratio: 1.180183e-01	ci left: 2.122485e-04	ci right 2.390649e-04	k: 1102	n:4890000
GTF2I   4890000 perm   9950 sec   (491 perm/sec)   p_kst 2.253579e-04   p_cons 8.963378e-01   p_joint 4.993865e-04

Joint ci ratio: 7.943609e-02	ci left: 4.769994e-04	ci right 5.166559e-04	k: 2433	n:4900000
Cons ci ratio: 6.022146e-04	ci left: 8.960724e-01	ci right 8.966124e-01	k: 4392079	n:4900000
KS ci ratio: 1.178581e-01	ci left: 2.124095e-04	ci right 2.392073e-04	k: 1105	n:4900000
GTF2I   4900000 perm   9993 sec   (490 perm/sec)   p_kst 2.255102e-04   p_cons 8.963427e-01   p_joint 4.965306e-04

Joint ci ratio: 7.933835e-02	ci left: 4.772257e-04	ci right 5.168499e-04	k: 2439	n:4910000
Cons ci ratio: 6.016125e-04	ci left: 8.960691e-01	ci right 8.966086e-01	k: 4401025	n:4910000
KS ci ratio: 1.176986e-01	ci left: 2.125699e-04	ci right 2.393491e-04	k: 1108	n:4910000
GTF2I   4910000 perm   10035 sec   (489 perm/sec)   p_kst 2.256619e-04   p_cons 8.963391e-01   p_joint 4.967413e-04

Joint ci ratio: 7.925719e-02	ci left: 4.772518e-04	ci right 5.168358e-04	k: 2444	n:4920000
Cons ci ratio: 6.010031e-04	ci left: 8.960687e-01	ci right 8.966076e-01	k: 4409985	n:4920000
KS ci ratio: 1.176456e-01	ci left: 2.123352e-04	ci right 2.390718e-04	k: 1109	n:4920000
GTF2I   4920000 perm   10077 sec   (488 perm/sec)   p_kst 2.254065e-04   p_cons 8.963384e-01   p_joint 4.967480e-04

Joint ci ratio: 7.919244e-02	ci left: 4.770790e-04	ci right 5.166149e-04	k: 2448	n:4930000
Cons ci ratio: 6.004249e-04	ci left: 8.960592e-01	ci right 8.965976e-01	k: 4418900	n:4930000
KS ci ratio: 1.175926e-01	ci left: 2.121013e-04	ci right 2.387957e-04	k: 1110	n:4930000
GTF2I   4930000 perm   10120 sec   (487 perm/sec)   p_kst 2.251521e-04   p_cons 8.963286e-01   p_joint 4.965517e-04

Joint ci ratio: 7.909560e-02	ci left: 4.773038e-04	ci right 5.168077e-04	k: 2454	n:4940000
Cons ci ratio: 5.998249e-04	ci left: 8.960570e-01	ci right 8.965948e-01	k: 4427851	n:4940000
KS ci ratio: 1.174869e-01	ci left: 2.120649e-04	ci right 2.387291e-04	k: 1112	n:4940000
GTF2I   4940000 perm   10163 sec   (486 perm/sec)   p_kst 2.251012e-04   p_cons 8.963261e-01   p_joint 4.967611e-04

Joint ci ratio: 7.903125e-02	ci left: 4.771317e-04	ci right 5.165877e-04	k: 2458	n:4950000
Cons ci ratio: 5.992222e-04	ci left: 8.960562e-01	ci right 8.965935e-01	k: 4436809	n:4950000
KS ci ratio: 1.174342e-01	ci left: 2.118326e-04	ci right 2.384547e-04	k: 1113	n:4950000
GTF2I   4950000 perm   10206 sec   (485 perm/sec)   p_kst 2.248485e-04   p_cons 8.963251e-01   p_joint 4.965657e-04

Joint ci ratio: 7.895102e-02	ci left: 4.771579e-04	ci right 5.165742e-04	k: 2463	n:4960000
Cons ci ratio: 5.986556e-04	ci left: 8.960447e-01	ci right 8.965815e-01	k: 4445714	n:4960000
KS ci ratio: 1.173289e-01	ci left: 2.117969e-04	ci right 2.383890e-04	k: 1115	n:4960000
GTF2I   4960000 perm   10250 sec   (484 perm/sec)   p_kst 2.247984e-04   p_cons 8.963133e-01   p_joint 4.965726e-04

Joint ci ratio: 7.885507e-02	ci left: 4.773812e-04	ci right 5.167659e-04	k: 2469	n:4970000
Cons ci ratio: 5.980745e-04	ci left: 8.960383e-01	ci right 8.965745e-01	k: 4454644	n:4970000
KS ci ratio: 1.171715e-01	ci left: 2.119567e-04	ci right 2.385307e-04	k: 1118	n:4970000
GTF2I   4970000 perm   10293 sec   (483 perm/sec)   p_kst 2.249497e-04   p_cons 8.963066e-01   p_joint 4.967807e-04

Joint ci ratio: 7.882318e-02	ci left: 4.768163e-04	ci right 5.161377e-04	k: 2471	n:4980000
Cons ci ratio: 5.974363e-04	ci left: 8.960502e-01	ci right 8.965859e-01	k: 4463665	n:4980000
KS ci ratio: 1.171192e-01	ci left: 2.117260e-04	ci right 2.382584e-04	k: 1119	n:4980000
GTF2I   4980000 perm   10335 sec   (482 perm/sec)   p_kst 2.246988e-04   p_cons 8.963183e-01   p_joint 4.961847e-04

Joint ci ratio: 7.877541e-02	ci left: 4.764501e-04	ci right 5.157164e-04	k: 2474	n:4990000
Cons ci ratio: 5.968188e-04	ci left: 8.960563e-01	ci right 8.965914e-01	k: 4472657	n:4990000
KS ci ratio: 1.170670e-01	ci left: 2.114962e-04	ci right 2.379872e-04	k: 1120	n:4990000
GTF2I   4990000 perm   10378 sec   (481 perm/sec)   p_kst 2.244489e-04   p_cons 8.963240e-01   p_joint 4.957916e-04

Joint ci ratio: 7.868009e-02	ci left: 4.766736e-04	ci right 5.159086e-04	k: 2480	n:5000000
Cons ci ratio: 5.962001e-04	ci left: 8.960633e-01	ci right 8.965979e-01	k: 4481654	n:5000000
KS ci ratio: 1.169106e-01	ci left: 2.116556e-04	ci right 2.381288e-04	k: 1123	n:5000000
GTF2I   5000000 perm   10419 sec   (480 perm/sec)   p_kst 2.246000e-04   p_cons 8.963308e-01   p_joint 4.960000e-04

Outputting figure to mutsig2_images.part000000000075/GTF2I.4_3129_5000000_0.0002246_0.89633_0.000496.png
                gene_name: GTF2I
               theta_stop: 0.12 
                    nperm: 5000000 
                     p_ks: 0.00022 
        ci_ks_bounds_left: 0.00021 
       ci_ks_bounds_right: 0.00024 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00048 
    ci_joint_bounds_right: 0.00052 

Current progress: 56 percent done.
GRIN2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
GRIN2C   10000 perm   2 sec   (6183 perm/sec)   p_kst 1.360000e-02   p_cons 2.012000e-01   p_joint 1.540000e-02

Joint ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
Cons ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
KS ci ratio: 2.351824e-01	ci left: 1.208789e-02	ci right 1.535574e-02	k: 273	n:20000
GRIN2C   20000 perm   4 sec   (5503 perm/sec)   p_kst 1.365000e-02   p_cons 2.016000e-01   p_joint 2.725000e-02

Joint ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
Cons ci ratio: 4.503414e-02	ci left: 1.970725e-01	ci right 2.061853e-01	k: 6048	n:30000
KS ci ratio: 1.850737e-01	ci left: 1.336863e-02	ci right 1.612652e-02	k: 441	n:30000
GRIN2C   30000 perm   6 sec   (5242 perm/sec)   p_kst 1.470000e-02   p_cons 2.016000e-01   p_joint 1.800000e-02

Joint ci ratio: 8.450356e-02	ci left: 4.888872e-02	ci right 5.322675e-02	k: 2041	n:40000
Cons ci ratio: 3.770012e-02	ci left: 2.087479e-01	ci right 2.167939e-01	k: 8510	n:40000
KS ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
GRIN2C   40000 perm   8 sec   (5077 perm/sec)   p_kst 1.410000e-02   p_cons 2.127500e-01   p_joint 5.102500e-02

Joint ci ratio: 9.344286e-02	ci left: 3.240904e-02	ci right 3.560536e-02	k: 1699	n:50000
Cons ci ratio: 3.501760e-02	ci left: 1.968789e-01	ci right 2.039159e-01	k: 10019	n:50000
KS ci ratio: 1.483061e-01	ci left: 1.275721e-02	ci right 1.481980e-02	k: 688	n:50000
GRIN2C   50000 perm   10 sec   (4938 perm/sec)   p_kst 1.376000e-02   p_cons 2.003800e-01   p_joint 3.398000e-02

Joint ci ratio: 8.515029e-02	ci left: 3.266207e-02	ci right 3.558322e-02	k: 2046	n:60000
Cons ci ratio: 3.198155e-02	ci left: 1.970375e-01	ci right 2.034581e-01	k: 12014	n:60000
KS ci ratio: 1.338981e-01	ci left: 1.313959e-02	ci right 1.504117e-02	k: 844	n:60000
GRIN2C   60000 perm   12 sec   (4839 perm/sec)   p_kst 1.406667e-02   p_cons 2.002333e-01   p_joint 3.410000e-02

Joint ci ratio: 7.933690e-02	ci left: 3.236139e-02	ci right 3.504887e-02	k: 2358	n:70000
Cons ci ratio: 2.966807e-02	ci left: 1.966444e-01	ci right 2.025805e-01	k: 13972	n:70000
KS ci ratio: 1.249876e-01	ci left: 1.299037e-02	ci right 1.473598e-02	k: 969	n:70000
GRIN2C   70000 perm   15 sec   (4752 perm/sec)   p_kst 1.384286e-02   p_cons 1.996000e-01   p_joint 3.368571e-02

Joint ci ratio: 7.398603e-02	ci left: 3.264435e-02	ci right 3.516460e-02	k: 2711	n:80000
Cons ci ratio: 2.776297e-02	ci left: 1.967106e-01	ci right 2.022612e-01	k: 15958	n:80000
KS ci ratio: 1.165201e-01	ci left: 1.313655e-02	ci right 1.477397e-02	k: 1115	n:80000
GRIN2C   80000 perm   17 sec   (4669 perm/sec)   p_kst 1.393750e-02   p_cons 1.994750e-01   p_joint 3.388750e-02

Joint ci ratio: 6.973109e-02	ci left: 3.273808e-02	ci right 3.511430e-02	k: 3052	n:90000
Cons ci ratio: 2.620790e-02	ci left: 1.964732e-01	ci right 2.017018e-01	k: 17917	n:90000
KS ci ratio: 1.097455e-01	ci left: 1.321012e-02	ci right 1.475477e-02	k: 1257	n:90000
GRIN2C   90000 perm   20 sec   (4588 perm/sec)   p_kst 1.396667e-02   p_cons 1.990778e-01   p_joint 3.391111e-02

Joint ci ratio: 7.251825e-02	ci left: 2.735949e-02	ci right 2.942799e-02	k: 2838	n:100000
Cons ci ratio: 2.488946e-02	ci left: 1.962705e-01	ci right 2.012270e-01	k: 19874	n:100000
KS ci ratio: 1.040677e-01	ci left: 1.326144e-02	ci right 1.472695e-02	k: 1398	n:100000
GRIN2C   100000 perm   22 sec   (4511 perm/sec)   p_kst 1.398000e-02   p_cons 1.987400e-01   p_joint 2.838000e-02

Joint ci ratio: 7.690764e-02	ci left: 2.218463e-02	ci right 2.396791e-02	k: 2537	n:110000
Cons ci ratio: 2.281601e-02	ci left: 2.091532e-01	ci right 2.139893e-01	k: 23272	n:110000
KS ci ratio: 9.918871e-02	ci left: 1.330511e-02	ci right 1.470250e-02	k: 1539	n:110000
GRIN2C   110000 perm   25 sec   (4435 perm/sec)   p_kst 1.399091e-02   p_cons 2.115636e-01   p_joint 2.306364e-02

Outputting figure to mutsig2_images.part000000000075/GRIN2C.3_3750_110000_0.013991_0.21156_0.023064.png
                gene_name: GRIN2C
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 58 percent done.
GRIPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
Cons ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
KS ci ratio: 9.363244e-03	ci left: 9.414924e-01	ci right 9.504455e-01	k: 9461	n:10000
GRIPAP1   10000 perm   2 sec   (6465 perm/sec)   p_kst 9.461000e-01   p_cons 4.560000e-01   p_joint 7.724000e-01

Outputting figure to mutsig2_images.part000000000075/GRIPAP1.3_2684_10000_0.9461_0.456_0.7724.png
                gene_name: GRIPAP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 60 percent done.
GSDMC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
KS ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
GSDMC   10000 perm   1 sec   (7111 perm/sec)   p_kst 8.132000e-01   p_cons 7.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSDMC.3_1579_10000_0.8132_0.7608_1.png
                gene_name: GSDMC
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GSDMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
Cons ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
KS ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
GSDMD   10000 perm   1 sec   (7761 perm/sec)   p_kst 9.300000e-03   p_cons 9.340000e-02   p_joint 1.890000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 8.570058e-02	ci left: 9.062716e-02	ci right 9.879111e-02	k: 1893	n:20000
KS ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
GSDMD   20000 perm   3 sec   (6784 perm/sec)   p_kst 8.700000e-03   p_cons 9.465000e-02   p_joint 4.700000e-03

Joint ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
Cons ci ratio: 6.644081e-02	ci left: 1.005018e-01	ci right 1.074417e-01	k: 3118	n:30000
KS ci ratio: 2.348645e-01	ci left: 8.119307e-03	ci right 1.031065e-02	k: 275	n:30000
GSDMD   30000 perm   5 sec   (6414 perm/sec)   p_kst 9.166667e-03   p_cons 1.039333e-01   p_joint 1.093333e-02

Joint ci ratio: 1.596389e-01	ci left: 1.366349e-02	ci right 1.605769e-02	k: 593	n:40000
Cons ci ratio: 5.697300e-02	ci left: 1.028019e-01	ci right 1.088554e-01	k: 4232	n:40000
KS ci ratio: 2.123145e-01	ci left: 7.552622e-03	ci right 9.369820e-03	k: 337	n:40000
GSDMD   40000 perm   7 sec   (6152 perm/sec)   p_kst 8.425000e-03   p_cons 1.058000e-01   p_joint 1.482500e-02

Joint ci ratio: 1.616798e-01	ci left: 1.067989e-02	ci right 1.257745e-02	k: 580	n:50000
Cons ci ratio: 5.081476e-02	ci left: 1.036508e-01	ci right 1.090750e-01	k: 5317	n:50000
KS ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
GSDMD   50000 perm   8 sec   (5958 perm/sec)   p_kst 8.080000e-03   p_cons 1.063400e-01   p_joint 1.160000e-02

Joint ci ratio: 1.621204e-01	ci left: 8.867236e-03	ci right 1.044740e-02	k: 578	n:60000
Cons ci ratio: 4.893478e-02	ci left: 9.424747e-02	ci right 9.899163e-02	k: 5796	n:60000
KS ci ratio: 1.769083e-01	ci left: 7.398325e-03	ci right 8.849858e-03	k: 486	n:60000
GSDMD   60000 perm   10 sec   (5788 perm/sec)   p_kst 8.100000e-03   p_cons 9.660000e-02   p_joint 9.633333e-03

Joint ci ratio: 1.681939e-01	ci left: 7.052101e-03	ci right 8.360631e-03	k: 538	n:70000
Cons ci ratio: 4.536861e-02	ci left: 9.418082e-02	ci right 9.856699e-02	k: 6745	n:70000
KS ci ratio: 1.628014e-01	ci left: 7.545242e-03	ci right 8.896000e-03	k: 574	n:70000
GSDMD   70000 perm   12 sec   (5646 perm/sec)   p_kst 8.200000e-03   p_cons 9.635714e-02   p_joint 7.685714e-03

Joint ci ratio: 1.678060e-01	ci left: 6.206280e-03	ci right 7.354926e-03	k: 541	n:80000
Cons ci ratio: 4.237074e-02	ci left: 9.459848e-02	ci right 9.870582e-02	k: 7731	n:80000
KS ci ratio: 1.533663e-01	ci left: 7.478491e-03	ci right 8.732575e-03	k: 647	n:80000
GSDMD   80000 perm   15 sec   (5517 perm/sec)   p_kst 8.087500e-03   p_cons 9.663750e-02   p_joint 6.762500e-03

Joint ci ratio: 1.378879e-01	ci left: 8.285989e-03	ci right 9.523753e-03	k: 800	n:90000
Cons ci ratio: 3.992087e-02	ci left: 9.483164e-02	ci right 9.870551e-02	k: 8708	n:90000
KS ci ratio: 1.455034e-01	ci left: 7.417630e-03	ci right 8.592192e-03	k: 719	n:90000
GSDMD   90000 perm   17 sec   (5393 perm/sec)   p_kst 7.988889e-03   p_cons 9.675556e-02   p_joint 8.888889e-03

Joint ci ratio: 1.441571e-01	ci left: 6.810638e-03	ci right 7.878237e-03	k: 733	n:100000
Cons ci ratio: 3.782613e-02	ci left: 9.514263e-02	ci right 9.882078e-02	k: 9697	n:100000
KS ci ratio: 1.398094e-01	ci left: 7.254412e-03	ci right 8.354425e-03	k: 779	n:100000
GSDMD   100000 perm   19 sec   (5280 perm/sec)   p_kst 7.790000e-03   p_cons 9.697000e-02   p_joint 7.330000e-03

Joint ci ratio: 1.212722e-01	ci left: 8.838169e-03	ci right 9.987920e-03	k: 1034	n:110000
Cons ci ratio: 3.601686e-02	ci left: 9.546453e-02	ci right 9.897492e-02	k: 10693	n:110000
KS ci ratio: 1.328357e-01	ci left: 7.332542e-03	ci right 8.384564e-03	k: 863	n:110000
GSDMD   110000 perm   21 sec   (5174 perm/sec)   p_kst 7.845455e-03   p_cons 9.720909e-02   p_joint 9.400000e-03

Joint ci ratio: 1.227029e-01	ci left: 7.915604e-03	ci right 8.958361e-03	k: 1011	n:120000
Cons ci ratio: 3.446746e-02	ci left: 9.562049e-02	ci right 9.898233e-02	k: 11675	n:120000
KS ci ratio: 1.274908e-01	ci left: 7.318084e-03	ci right 8.322587e-03	k: 937	n:120000
GSDMD   120000 perm   24 sec   (5075 perm/sec)   p_kst 7.808333e-03   p_cons 9.729167e-02   p_joint 8.425000e-03

Joint ci ratio: 1.451781e-01	ci left: 5.171905e-03	ci right 5.988848e-03	k: 724	n:130000
Cons ci ratio: 3.311383e-02	ci left: 9.569411e-02	ci right 9.892387e-02	k: 12649	n:130000
KS ci ratio: 1.224994e-01	ci left: 7.336401e-03	ci right 8.301132e-03	k: 1015	n:130000
GSDMD   130000 perm   26 sec   (4978 perm/sec)   p_kst 7.807692e-03   p_cons 9.730000e-02   p_joint 5.569231e-03

Joint ci ratio: 1.481100e-01	ci left: 4.609721e-03	ci right 5.353866e-03	k: 696	n:140000
Cons ci ratio: 3.187829e-02	ci left: 9.592255e-02	ci right 9.903700e-02	k: 13646	n:140000
KS ci ratio: 1.165053e-01	ci left: 7.553870e-03	ci right 8.495249e-03	k: 1122	n:140000
GSDMD   140000 perm   29 sec   (4885 perm/sec)   p_kst 8.014286e-03   p_cons 9.747143e-02   p_joint 4.971429e-03

Joint ci ratio: 1.296950e-01	ci left: 5.660583e-03	ci right 6.452026e-03	k: 907	n:150000
Cons ci ratio: 3.084622e-02	ci left: 9.569874e-02	ci right 9.870352e-02	k: 14579	n:150000
KS ci ratio: 1.127067e-01	ci left: 7.548897e-03	ci right 8.456942e-03	k: 1199	n:150000
GSDMD   150000 perm   31 sec   (4795 perm/sec)   p_kst 7.993333e-03   p_cons 9.719333e-02   p_joint 6.046667e-03

Joint ci ratio: 1.282367e-01	ci left: 5.433771e-03	ci right 6.184307e-03	k: 928	n:160000
Cons ci ratio: 2.989228e-02	ci left: 9.559748e-02	ci right 9.850464e-02	k: 15527	n:160000
KS ci ratio: 1.094299e-01	ci left: 7.520660e-03	ci right 8.397311e-03	k: 1272	n:160000
GSDMD   160000 perm   34 sec   (4714 perm/sec)   p_kst 7.950000e-03   p_cons 9.704375e-02   p_joint 5.800000e-03

Joint ci ratio: 1.375766e-01	ci left: 4.425847e-03	ci right 5.085335e-03	k: 807	n:170000
Cons ci ratio: 2.902463e-02	ci left: 9.549188e-02	ci right 9.831012e-02	k: 16472	n:170000
KS ci ratio: 1.061058e-01	ci left: 7.541901e-03	ci right 8.392655e-03	k: 1353	n:170000
GSDMD   170000 perm   37 sec   (4633 perm/sec)   p_kst 7.958824e-03   p_cons 9.689412e-02   p_joint 4.747059e-03

Joint ci ratio: 1.197627e-01	ci left: 5.562183e-03	ci right 6.276093e-03	k: 1064	n:180000
Cons ci ratio: 2.826613e-02	ci left: 9.516725e-02	ci right 9.790132e-02	k: 17375	n:180000
KS ci ratio: 1.031398e-01	ci left: 7.550313e-03	ci right 8.376763e-03	k: 1432	n:180000
GSDMD   180000 perm   40 sec   (4557 perm/sec)   p_kst 7.955556e-03   p_cons 9.652778e-02   p_joint 5.911111e-03

Joint ci ratio: 1.176346e-01	ci left: 5.468589e-03	ci right 6.157147e-03	k: 1103	n:190000
Cons ci ratio: 2.746777e-02	ci left: 9.548445e-02	ci right 9.814892e-02	k: 18394	n:190000
KS ci ratio: 1.003091e-01	ci left: 7.573531e-03	ci right 8.378431e-03	k: 1514	n:190000
GSDMD   190000 perm   42 sec   (4480 perm/sec)   p_kst 7.968421e-03   p_cons 9.681053e-02   p_joint 5.805263e-03

Joint ci ratio: 8.334368e-02	ci left: 1.048382e-02	ci right 1.140044e-02	k: 2187	n:200000
Cons ci ratio: 2.675251e-02	ci left: 9.564664e-02	ci right 9.824506e-02	k: 19388	n:200000
KS ci ratio: 9.078976e-02	ci left: 8.815522e-03	ci right 9.658794e-03	k: 1846	n:200000
GSDMD   200000 perm   45 sec   (4409 perm/sec)   p_kst 9.230000e-03   p_cons 9.694000e-02   p_joint 1.093500e-02

Outputting figure to mutsig2_images.part000000000075/GSDMD.3_1495_200000_0.00923_0.09694_0.010935.png
                gene_name: GSDMD
               theta_stop: 0.091 
                    nperm: 200000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 64 percent done.
GSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
Cons ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
KS ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
GSN   10000 perm   2 sec   (6439 perm/sec)   p_kst 2.480000e-02   p_cons 3.642000e-01   p_joint 2.690000e-02

Joint ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
Cons ci ratio: 3.652512e-02	ci left: 3.587213e-01	ci right 3.721179e-01	k: 7308	n:20000
KS ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
GSN   20000 perm   3 sec   (5816 perm/sec)   p_kst 2.240000e-02   p_cons 3.654000e-01   p_joint 3.005000e-02

Joint ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
Cons ci ratio: 2.978085e-02	ci left: 3.606120e-01	ci right 3.715473e-01	k: 10982	n:30000
KS ci ratio: 1.518392e-01	ci left: 2.008103e-02	ci right 2.341249e-02	k: 651	n:30000
GSN   30000 perm   5 sec   (5549 perm/sec)   p_kst 2.170000e-02   p_cons 3.660667e-01   p_joint 5.473333e-02

Joint ci ratio: 7.620269e-02	ci left: 5.968063e-02	ci right 6.443319e-02	k: 2481	n:40000
Cons ci ratio: 2.592905e-02	ci left: 3.588835e-01	ci right 3.683363e-01	k: 14544	n:40000
KS ci ratio: 1.319895e-01	ci left: 2.014929e-02	ci right 2.302075e-02	k: 862	n:40000
GSN   40000 perm   7 sec   (5369 perm/sec)   p_kst 2.155000e-02   p_cons 3.636000e-01   p_joint 6.202500e-02

Joint ci ratio: 7.008674e-02	ci left: 5.681265e-02	ci right 6.095875e-02	k: 2943	n:50000
Cons ci ratio: 2.329043e-02	ci left: 3.574267e-01	ci right 3.658694e-01	k: 18082	n:50000
KS ci ratio: 1.201053e-01	ci left: 1.960578e-02	ci right 2.213028e-02	k: 1042	n:50000
GSN   50000 perm   10 sec   (5238 perm/sec)   p_kst 2.084000e-02   p_cons 3.616400e-01   p_joint 5.886000e-02

Joint ci ratio: 7.498205e-02	ci left: 4.193074e-02	ci right 4.521360e-02	k: 2613	n:60000
Cons ci ratio: 2.122865e-02	ci left: 3.585022e-01	ci right 3.662111e-01	k: 21741	n:60000
KS ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
GSN   60000 perm   12 sec   (5123 perm/sec)   p_kst 2.108333e-02   p_cons 3.623500e-01   p_joint 4.355000e-02

Joint ci ratio: 6.523195e-02	ci left: 4.745463e-02	ci right 5.066860e-02	k: 3433	n:70000
Cons ci ratio: 1.911602e-02	ci left: 3.716826e-01	ci right 3.788706e-01	k: 26269	n:70000
KS ci ratio: 1.006730e-01	ci left: 2.013168e-02	ci right 2.227969e-02	k: 1483	n:70000
GSN   70000 perm   14 sec   (4999 perm/sec)   p_kst 2.118571e-02   p_cons 3.752714e-01   p_joint 4.904286e-02

Joint ci ratio: 6.049055e-02	ci left: 4.836431e-02	ci right 5.139344e-02	k: 3989	n:80000
Cons ci ratio: 1.788848e-02	ci left: 3.717309e-01	ci right 3.784531e-01	k: 30007	n:80000
KS ci ratio: 9.411440e-02	ci left: 2.022515e-02	ci right 2.223478e-02	k: 1697	n:80000
GSN   80000 perm   16 sec   (4904 perm/sec)   p_kst 2.121250e-02   p_cons 3.750875e-01   p_joint 4.986250e-02

Outputting figure to mutsig2_images.part000000000075/GSN.3_2445_80000_0.021212_0.37509_0.049862.png
                gene_name: GSN
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 66 percent done.
GSPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
KS ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
GSPT2   10000 perm   1 sec   (7060 perm/sec)   p_kst 8.438000e-01   p_cons 6.437000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSPT2.3_1891_10000_0.8438_0.6437_1.png
                gene_name: GSPT2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
GSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
KS ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
GSS   10000 perm   1 sec   (6980 perm/sec)   p_kst 5.420000e-01   p_cons 9.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSS.3_1473_10000_0.542_0.922_1.png
                gene_name: GSS
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GSTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
GSTA2   10000 perm   1 sec   (7836 perm/sec)   p_kst 1.730000e-01   p_cons 6.858000e-01   p_joint 3.126000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA2.3_693_10000_0.173_0.6858_0.3126.png
                gene_name: GSTA2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 72 percent done.
GSTA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
Cons ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
KS ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
GSTA5   10000 perm   1 sec   (8305 perm/sec)   p_kst 3.704000e-01   p_cons 3.544000e-01   p_joint 4.505000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA5.3_693_10000_0.3704_0.3544_0.4505.png
                gene_name: GSTA5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 74 percent done.
GTF2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
Cons ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
KS ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
GTF2A1   10000 perm   1 sec   (7182 perm/sec)   p_kst 4.627000e-01   p_cons 7.650000e-01   p_joint 6.001000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2A1.3_1167_10000_0.4627_0.765_0.6001.png
                gene_name: GTF2A1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 76 percent done.
GTF3C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
Cons ci ratio: 9.212254e-02	ci left: 1.461923e-01	ci right 1.604103e-01	k: 1532	n:10000
KS ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
GTF3C3   10000 perm   2 sec   (6628 perm/sec)   p_kst 3.969000e-01   p_cons 1.532000e-01   p_joint 3.662000e-01

Outputting figure to mutsig2_images.part000000000075/GTF3C3.3_2733_10000_0.3969_0.1532_0.3662.png
                gene_name: GTF3C3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 78 percent done.
GRINL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
Cons ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
GRINL1A   10000 perm   1 sec   (7777 perm/sec)   p_kst 5.960000e-01   p_cons 9.534000e-01   p_joint 8.160000e-01

Outputting figure to mutsig2_images.part000000000075/GRINL1A.2_1123_10000_0.596_0.9534_0.816.png
                gene_name: GRINL1A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 80 percent done.
GSDMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
KS ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
GSDMB   10000 perm   1 sec   (7697 perm/sec)   p_kst 6.420000e-01   p_cons 8.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSDMB.2_1291_10000_0.642_0.8353_1.png
                gene_name: GSDMB
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
KS ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
GSG1   10000 perm   1 sec   (8001 perm/sec)   p_kst 3.080000e-02   p_cons 1.672000e-01   p_joint 5.110000e-02

Joint ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
Cons ci ratio: 6.265001e-02	ci left: 1.585469e-01	ci right 1.688511e-01	k: 3273	n:20000
KS ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
GSG1   20000 perm   3 sec   (7032 perm/sec)   p_kst 3.090000e-02   p_cons 1.636500e-01   p_joint 1.940000e-02

Joint ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
Cons ci ratio: 4.967349e-02	ci left: 1.676129e-01	ci right 1.761841e-01	k: 5156	n:30000
KS ci ratio: 1.248109e-01	ci left: 2.984322e-02	ci right 3.384812e-02	k: 954	n:30000
GSG1   30000 perm   5 sec   (6629 perm/sec)   p_kst 3.180000e-02   p_cons 1.718667e-01   p_joint 4.056667e-02

Joint ci ratio: 9.497260e-02	ci left: 3.890666e-02	ci right 4.281035e-02	k: 1633	n:40000
Cons ci ratio: 4.295827e-02	ci left: 1.685858e-01	ci right 1.760119e-01	k: 6891	n:40000
KS ci ratio: 1.089023e-01	ci left: 2.966386e-02	ci right 3.310462e-02	k: 1254	n:40000
GSG1   40000 perm   6 sec   (6401 perm/sec)   p_kst 3.135000e-02   p_cons 1.722750e-01   p_joint 4.082500e-02

Joint ci ratio: 4.446652e-02	ci left: 1.315207e-01	ci right 1.375218e-01	k: 6725	n:50000
Cons ci ratio: 3.870020e-02	ci left: 1.669549e-01	ci right 1.735635e-01	k: 8512	n:50000
KS ci ratio: 9.814249e-02	ci left: 2.940049e-02	ci right 3.245429e-02	k: 1545	n:50000
GSG1   50000 perm   8 sec   (6214 perm/sec)   p_kst 3.090000e-02   p_cons 1.702400e-01   p_joint 1.345000e-01

Outputting figure to mutsig2_images.part000000000075/GSG1.2_1254_50000_0.0309_0.17024_0.1345.png
                gene_name: GSG1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 84 percent done.
GSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
KS ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
GSG2   10000 perm   1 sec   (7293 perm/sec)   p_kst 7.401000e-01   p_cons 8.075000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSG2.2_2401_10000_0.7401_0.8075_1.png
                gene_name: GSG2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
GSK3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
GSK3B   10000 perm   1 sec   (7603 perm/sec)   p_kst 1.608000e-01   p_cons 2.326000e-01   p_joint 2.147000e-01

Outputting figure to mutsig2_images.part000000000075/GSK3B.2_1350_10000_0.1608_0.2326_0.2147.png
                gene_name: GSK3B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 88 percent done.
GSTA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
GSTA3   10000 perm   1 sec   (7979 perm/sec)   p_kst 1.790000e-02   p_cons 7.320000e-02   p_joint 1.250000e-02

Joint ci ratio: 2.473661e-01	ci left: 1.086559e-02	ci right 1.397857e-02	k: 247	n:20000
Cons ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
KS ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
GSTA3   20000 perm   3 sec   (7003 perm/sec)   p_kst 1.720000e-02   p_cons 7.310000e-02   p_joint 1.235000e-02

Joint ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
Cons ci ratio: 7.915750e-02	ci left: 7.256766e-02	ci right 7.858151e-02	k: 2266	n:30000
KS ci ratio: 1.710751e-01	ci left: 1.572706e-02	ci right 1.870083e-02	k: 515	n:30000
GSTA3   30000 perm   5 sec   (6616 perm/sec)   p_kst 1.716667e-02   p_cons 7.553333e-02   p_joint 1.206667e-02

Joint ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
Cons ci ratio: 6.909400e-02	ci left: 7.189599e-02	ci right 7.706599e-02	k: 2978	n:40000
KS ci ratio: 1.491517e-01	ci left: 1.570766e-02	ci right 1.826316e-02	k: 678	n:40000
GSTA3   40000 perm   6 sec   (6367 perm/sec)   p_kst 1.695000e-02   p_cons 7.445000e-02   p_joint 1.222500e-02

Joint ci ratio: 1.582696e-01	ci left: 1.116008e-02	ci right 1.309718e-02	k: 605	n:50000
Cons ci ratio: 6.217709e-02	ci left: 7.134575e-02	ci right 7.594390e-02	k: 3681	n:50000
KS ci ratio: 1.342733e-01	ci left: 1.563358e-02	ci right 1.790302e-02	k: 837	n:50000
GSTA3   50000 perm   8 sec   (6179 perm/sec)   p_kst 1.674000e-02   p_cons 7.362000e-02   p_joint 1.210000e-02

Joint ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
Cons ci ratio: 5.670711e-02	ci left: 7.167101e-02	ci right 7.587033e-02	k: 4425	n:60000
KS ci ratio: 1.238711e-01	ci left: 1.539885e-02	ci right 1.744831e-02	k: 984	n:60000
GSTA3   60000 perm   10 sec   (6010 perm/sec)   p_kst 1.640000e-02   p_cons 7.375000e-02   p_joint 1.186667e-02

Joint ci ratio: 1.349265e-01	ci left: 1.110985e-02	ci right 1.273099e-02	k: 833	n:70000
Cons ci ratio: 5.261440e-02	ci left: 7.153508e-02	ci right 7.541465e-02	k: 5142	n:70000
KS ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
GSTA3   70000 perm   12 sec   (5867 perm/sec)   p_kst 1.617143e-02   p_cons 7.345714e-02   p_joint 1.190000e-02

Joint ci ratio: 1.317166e-01	ci left: 1.022830e-02	ci right 1.168250e-02	k: 875	n:80000
Cons ci ratio: 4.901728e-02	ci left: 7.220763e-02	ci right 7.584833e-02	k: 5921	n:80000
KS ci ratio: 1.065902e-01	ci left: 1.573812e-02	ci right 1.752218e-02	k: 1329	n:80000
GSTA3   80000 perm   14 sec   (5733 perm/sec)   p_kst 1.661250e-02   p_cons 7.401250e-02   p_joint 1.093750e-02

Joint ci ratio: 1.290727e-01	ci left: 9.489282e-03	ci right 1.080924e-02	k: 912	n:90000
Cons ci ratio: 4.626742e-02	ci left: 7.215509e-02	ci right 7.558355e-02	k: 6647	n:90000
KS ci ratio: 1.002985e-01	ci left: 1.585118e-02	ci right 1.753574e-02	k: 1501	n:90000
GSTA3   90000 perm   16 sec   (5601 perm/sec)   p_kst 1.667778e-02   p_cons 7.385556e-02   p_joint 1.013333e-02

Joint ci ratio: 1.225373e-01	ci left: 9.508901e-03	ci right 1.075976e-02	k: 1012	n:100000
Cons ci ratio: 4.395636e-02	ci left: 7.204837e-02	ci right 7.529641e-02	k: 7366	n:100000
KS ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
GSTA3   100000 perm   18 sec   (5487 perm/sec)   p_kst 1.665000e-02   p_cons 7.366000e-02   p_joint 1.012000e-02

Joint ci ratio: 1.156506e-01	ci left: 9.738230e-03	ci right 1.094234e-02	k: 1136	n:110000
Cons ci ratio: 4.186811e-02	ci left: 7.226169e-02	ci right 7.536082e-02	k: 8118	n:110000
KS ci ratio: 9.051752e-02	ci left: 1.600427e-02	ci right 1.753045e-02	k: 1843	n:110000
GSTA3   110000 perm   20 sec   (5373 perm/sec)   p_kst 1.675455e-02   p_cons 7.380000e-02   p_joint 1.032727e-02

Joint ci ratio: 1.059280e-01	ci left: 1.068528e-02	ci right 1.188851e-02	k: 1353	n:120000
Cons ci ratio: 4.010301e-02	ci left: 7.226911e-02	ci right 7.523486e-02	k: 8849	n:120000
KS ci ratio: 8.678770e-02	ci left: 1.599065e-02	ci right 1.744951e-02	k: 2005	n:120000
GSTA3   120000 perm   23 sec   (5265 perm/sec)   p_kst 1.670833e-02   p_cons 7.374167e-02   p_joint 1.127500e-02

Joint ci ratio: 1.022968e-01	ci left: 1.059753e-02	ci right 1.174751e-02	k: 1451	n:130000
Cons ci ratio: 3.855036e-02	ci left: 7.225486e-02	ci right 7.510265e-02	k: 9577	n:130000
KS ci ratio: 8.342526e-02	ci left: 1.600282e-02	ci right 1.740347e-02	k: 2170	n:130000
GSTA3   130000 perm   25 sec   (5163 perm/sec)   p_kst 1.669231e-02   p_cons 7.366923e-02   p_joint 1.116154e-02

Joint ci ratio: 7.387651e-02	ci left: 1.898546e-02	ci right 2.044881e-02	k: 2759	n:140000
Cons ci ratio: 3.713402e-02	ci left: 7.235786e-02	ci right 7.510269e-02	k: 10321	n:140000
KS ci ratio: 8.077798e-02	ci left: 1.587417e-02	ci right 1.721739e-02	k: 2315	n:140000
GSTA3   140000 perm   28 sec   (5057 perm/sec)   p_kst 1.653571e-02   p_cons 7.372143e-02   p_joint 1.970714e-02

Outputting figure to mutsig2_images.part000000000075/GSTA3.2_693_140000_0.016536_0.073721_0.019707.png
                gene_name: GSTA3
               theta_stop: 0.081 
                    nperm: 140000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 90 percent done.
GSTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
Cons ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
KS ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
GSTCD   10000 perm   1 sec   (7176 perm/sec)   p_kst 8.317000e-01   p_cons 3.857000e-01   p_joint 8.200000e-01

Outputting figure to mutsig2_images.part000000000075/GSTCD.2_1946_10000_0.8317_0.3857_0.82.png
                gene_name: GSTCD
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 92 percent done.
GSTM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
KS ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
GSTM2   10000 perm   1 sec   (8331 perm/sec)   p_kst 3.487000e-01   p_cons 7.860000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000075/GSTM2.2_702_10000_0.3487_0.786_0.6024.png
                gene_name: GSTM2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 94 percent done.
GSTM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
GSTM5   10000 perm   1 sec   (8346 perm/sec)   p_kst 1.190000e-02   p_cons 8.370000e-02   p_joint 6.310000e-02

Joint ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
Cons ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
KS ci ratio: 2.429408e-01	ci left: 1.128823e-02	ci right 1.445574e-02	k: 256	n:20000
GSTM5   20000 perm   3 sec   (7300 perm/sec)   p_kst 1.280000e-02   p_cons 7.165000e-02   p_joint 5.635000e-02

Joint ci ratio: 6.700563e-02	ci left: 9.895844e-02	ci right 1.058521e-01	k: 3071	n:30000
Cons ci ratio: 8.135220e-02	ci left: 6.890364e-02	ci right 7.477960e-02	k: 2154	n:30000
KS ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
GSTM5   30000 perm   4 sec   (6893 perm/sec)   p_kst 1.256667e-02   p_cons 7.180000e-02   p_joint 1.023667e-01

Joint ci ratio: 6.378476e-02	ci left: 8.351647e-02	ci right 8.904376e-02	k: 3450	n:40000
Cons ci ratio: 7.075000e-02	ci left: 6.874776e-02	ci right 7.381469e-02	k: 2850	n:40000
KS ci ratio: 1.731574e-01	ci left: 1.155385e-02	ci right 1.376774e-02	k: 505	n:40000
GSTM5   40000 perm   6 sec   (6619 perm/sec)   p_kst 1.262500e-02   p_cons 7.125000e-02   p_joint 8.625000e-02

Joint ci ratio: 7.186756e-02	ci left: 5.413813e-02	ci right 5.819359e-02	k: 2807	n:50000
Cons ci ratio: 6.402633e-02	ci left: 6.750275e-02	ci right 7.198736e-02	k: 3486	n:50000
KS ci ratio: 1.563227e-01	ci left: 1.144840e-02	ci right 1.340881e-02	k: 620	n:50000
GSTM5   50000 perm   8 sec   (6412 perm/sec)   p_kst 1.240000e-02   p_cons 6.972000e-02   p_joint 5.614000e-02

Joint ci ratio: 9.674588e-02	ci left: 2.534334e-02	ci right 2.793605e-02	k: 1597	n:60000
Cons ci ratio: 5.824164e-02	ci left: 6.815179e-02	ci right 7.225657e-02	k: 4211	n:60000
KS ci ratio: 1.422396e-01	ci left: 1.161024e-02	ci right 1.340404e-02	k: 749	n:60000
GSTM5   60000 perm   10 sec   (6223 perm/sec)   p_kst 1.248333e-02   p_cons 7.018333e-02   p_joint 2.661667e-02

Joint ci ratio: 8.303290e-02	ci left: 2.957441e-02	ci right 3.215038e-02	k: 2159	n:70000
Cons ci ratio: 5.401597e-02	ci left: 6.807827e-02	ci right 7.187176e-02	k: 4897	n:70000
KS ci ratio: 1.306342e-01	ci left: 1.186976e-02	ci right 1.354242e-02	k: 888	n:70000
GSTM5   70000 perm   12 sec   (6069 perm/sec)   p_kst 1.268571e-02   p_cons 6.995714e-02   p_joint 3.084286e-02

Joint ci ratio: 6.434359e-02	ci left: 4.290909e-02	ci right 4.577407e-02	k: 3546	n:80000
Cons ci ratio: 5.055024e-02	ci left: 6.814249e-02	ci right 7.168877e-02	k: 5592	n:80000
KS ci ratio: 1.231210e-01	ci left: 1.174158e-02	ci right 1.329407e-02	k: 1000	n:80000
GSTM5   80000 perm   13 sec   (5930 perm/sec)   p_kst 1.250000e-02   p_cons 6.990000e-02   p_joint 4.432500e-02

Joint ci ratio: 4.475507e-02	ci left: 7.678389e-02	ci right 8.031000e-02	k: 7068	n:90000
Cons ci ratio: 4.759473e-02	ci left: 6.841831e-02	ci right 7.176502e-02	k: 6307	n:90000
KS ci ratio: 1.157742e-01	ci left: 1.184909e-02	ci right 1.331591e-02	k: 1131	n:90000
GSTM5   90000 perm   16 sec   (5797 perm/sec)   p_kst 1.256667e-02   p_cons 7.007778e-02   p_joint 7.853333e-02

Joint ci ratio: 4.249201e-02	ci left: 7.676104e-02	ci right 8.010346e-02	k: 7842	n:100000
Cons ci ratio: 4.503805e-02	ci left: 6.883181e-02	ci right 7.201316e-02	k: 7041	n:100000
KS ci ratio: 1.098233e-01	ci left: 1.188866e-02	ci right 1.327983e-02	k: 1257	n:100000
GSTM5   100000 perm   18 sec   (5669 perm/sec)   p_kst 1.257000e-02   p_cons 7.041000e-02   p_joint 7.842000e-02

Joint ci ratio: 4.458381e-02	ci left: 6.419781e-02	ci right 6.713423e-02	k: 7222	n:110000
Cons ci ratio: 4.295166e-02	ci left: 6.887702e-02	ci right 7.190931e-02	k: 7742	n:110000
KS ci ratio: 1.044377e-01	ci left: 1.198460e-02	ci right 1.331400e-02	k: 1390	n:110000
GSTM5   110000 perm   20 sec   (5549 perm/sec)   p_kst 1.263636e-02   p_cons 7.038182e-02   p_joint 6.565455e-02

Joint ci ratio: 6.083645e-02	ci left: 3.242336e-02	ci right 3.446594e-02	k: 4012	n:120000
Cons ci ratio: 4.110716e-02	ci left: 6.899183e-02	ci right 7.189564e-02	k: 8452	n:120000
KS ci ratio: 9.993995e-02	ci left: 1.202531e-02	ci right 1.329840e-02	k: 1518	n:120000
GSTM5   120000 perm   22 sec   (5434 perm/sec)   p_kst 1.265000e-02   p_cons 7.043333e-02   p_joint 3.343333e-02

Outputting figure to mutsig2_images.part000000000075/GSTM5.2_689_120000_0.01265_0.070433_0.033433.png
                gene_name: GSTM5
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 96 percent done.
GSTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
GSTP1   10000 perm   1 sec   (7941 perm/sec)   p_kst 5.438000e-01   p_cons 9.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSTP1.2_661_10000_0.5438_0.9686_1.png
                gene_name: GSTP1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GTF2E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
Cons ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
KS ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
GTF2E2   10000 perm   1 sec   (7843 perm/sec)   p_kst 4.880000e-02   p_cons 1.043000e-01   p_joint 5.388000e-01

Joint ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
Cons ci ratio: 8.246861e-02	ci left: 9.729878e-02	ci right 1.057175e-01	k: 2029	n:20000
KS ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
GTF2E2   20000 perm   3 sec   (6769 perm/sec)   p_kst 4.825000e-02   p_cons 1.014500e-01   p_joint 8.230000e-02

Joint ci ratio: 5.299770e-02	ci left: 1.501303e-01	ci right 1.583367e-01	k: 4626	n:30000
Cons ci ratio: 7.063575e-02	ci left: 8.980197e-02	ci right 9.641041e-02	k: 2792	n:30000
KS ci ratio: 9.938418e-02	ci left: 4.684472e-02	ci right 5.177636e-02	k: 1478	n:30000
GTF2E2   30000 perm   5 sec   (6086 perm/sec)   p_kst 4.926667e-02   p_cons 9.306667e-02   p_joint 1.542000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2E2.2_904_30000_0.049267_0.093067_0.1542.png
                gene_name: GTF2E2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000075
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 75 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4422005: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000076> was used as the working directory.
Started at Wed Oct 24 17:50:23 2012
Results reported at Wed Oct 24 18:55:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000076.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000076.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 76  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000076.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3377.61 sec.
    Max Memory :      5436 MB
    Max Swap   :      7739 MB

    Max Processes  :         7
    Max Threads    :        73

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
76
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 76
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 76: processing genes 6786 - 6876
Calculating significance of each gene.
Using projection method.
6786	GTF3C5	8.828250e-01
6787	GTF3C6	1
6788	GTPBP1	5.568994e-01
6789	GTPBP10	8.158489e-02
6790	GTPBP2	1
6791	GTPBP3	4.384391e-01
6792	GTPBP4	9.871624e-01
6793	GTPBP5	1.197627e-01
6794	GTPBP8	8.058950e-01
6795	GTSE1	9.759818e-01
6796	GTSF1	3.226438e-01
6797	GTSF1L	1
6798	GUCA1A	7.944974e-01
6799	GUCA1B	5.421942e-01
6800	GUCA1C	1.677381e-02
6801	GUCA2A	1
6802	GUCA2B	3.694176e-02
6803	GUCY1A2	9.548686e-01
6804	GUCY1A3	2.701035e-01
6805	GUCY1B3	3.770572e-01
6806	GUCY2C	5.455964e-01
6807	GUCY2D	9.885308e-01
6808	GUCY2F	8.350780e-01
6809	GUF1	3.733738e-01
6810	GUK1	2.230861e-01
6811	GULP1	7.290383e-01
6812	GUSB	5.570489e-01
6813	GXYLT1	1.722047e-01
6814	GXYLT2	8.827981e-01
6815	GYG1	8.973394e-01
6816	GYG2	8.491875e-01
6817	GYLTL1B	1
6818	GYPA	1
6819	GYPB	1
6820	GYPC	1.038532e-01
6821	GYPE	1.608020e-01
6822	GYS1	1
6823	GYS2	6.256465e-01
6824	GZF1	8.912376e-01
6825	GZMA	4.749572e-02
6826	GZMB	1.504078e-01
6827	GZMH	3.178762e-01
6828	GZMK	2.329852e-01
6829	GZMM	1
6830	H1F0	1
6831	H1FNT	4.452357e-01
6832	H1FOO	1
6833	H1FX	1
6834	H2AFB1	1
6835	H2AFB3	1
6836	H2AFJ	1
6837	H2AFV	5.675183e-01
6838	H2AFX	5.814210e-01
6839	H2AFY	1
6840	H2AFY2	7.862892e-01
6841	H2AFZ	1
6842	H2BFWT	3.244134e-01
6843	H3F3A	1
6844	H3F3B	9.729279e-02
6845	H3F3C	6.481687e-03
6846	H6PD	9.149482e-01
6847	HAAO	1
6848	HABP2	7.605291e-01
6849	HABP4	8.145495e-01
6850	HACE1	8.998776e-01
6851	HACL1	8.893552e-01
6852	HADH	3.386903e-01
6853	HADHA	8.320582e-01
6854	HADHB	2.920593e-01
6855	HAGH	7.235949e-01
6856	HAGHL	4.971167e-01
6857	HAL	8.681310e-01
6858	HAMP	2.739478e-01
6859	HAND1	1.346853e-01
6860	HAND2	7.149607e-02
6861	HAO1	5.134042e-01
6862	HAO2	1.843405e-01
6863	HAP1	1
6864	HAPLN1	1.733050e-02
6865	HAPLN2	1
6866	HAPLN3	6.432782e-01
6867	HAPLN4	6.801069e-01
6868	HARBI1	1
6869	HARS	7.061700e-01
6870	HARS2	7.032320e-01
6871	HAS1	4.847838e-01
6872	HAS2	2.173265e-03
6873	HAS3	7.031617e-01
6874	HAT1	6.453822e-01
6875	HAUS1	7.653975e-01
6876	HAUS2	6.913846e-01
Done

Running MutSig 2:
Scatter job 76: processing genes 6786 - 6876
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GUCY2F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
Cons ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
GUCY2F   10000 perm   3 sec   (3534 perm/sec)   p_kst 7.469000e-01   p_cons 5.882000e-01   p_joint 9.007000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY2F.12_3399_10000_0.7469_0.5882_0.9007.png
                gene_name: GUCY2F
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 2 percent done.
HAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
Cons ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
KS ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
HAS2   10000 perm   3 sec   (3784 perm/sec)   p_kst 1.700000e-01   p_cons 9.729000e-01   p_joint 2.615000e-01

Outputting figure to mutsig2_images.part000000000076/HAS2.11_1671_10000_0.17_0.9729_0.2615.png
                gene_name: HAS2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
HAO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
Cons ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KS ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
HAO2   10000 perm   2 sec   (5094 perm/sec)   p_kst 3.268000e-01   p_cons 1.952000e-01   p_joint 3.117000e-01

Outputting figure to mutsig2_images.part000000000076/HAO2.8_1084_10000_0.3268_0.1952_0.3117.png
                gene_name: HAO2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 6 percent done.
HAPLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
HAPLN1   10000 perm   6 sec   (1763 perm/sec)   p_kst 4.247000e-01   p_cons 1.620000e-02   p_joint 4.870000e-02

Joint ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
Cons ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
KS ci ratio: 3.211324e-02	ci left: 4.200310e-01	ci right 4.337903e-01	k: 8538	n:20000
HAPLN1   20000 perm   14 sec   (1465 perm/sec)   p_kst 4.269000e-01   p_cons 1.510000e-02   p_joint 5.825000e-02

Joint ci ratio: 8.070842e-02	ci left: 6.995027e-02	ci right 7.586609e-02	k: 2186	n:30000
Cons ci ratio: 1.610439e-01	ci left: 1.780522e-02	ci right 2.095549e-02	k: 580	n:30000
KS ci ratio: 2.620507e-02	ci left: 4.215930e-01	ci right 4.328211e-01	k: 12816	n:30000
HAPLN1   30000 perm   20 sec   (1478 perm/sec)   p_kst 4.272000e-01   p_cons 1.933333e-02   p_joint 7.286667e-02

Joint ci ratio: 7.528522e-02	ci left: 6.108035e-02	ci right 6.588326e-02	k: 2538	n:40000
Cons ci ratio: 1.410236e-01	ci left: 1.761218e-02	ci right 2.030829e-02	k: 757	n:40000
KS ci ratio: 2.269691e-02	ci left: 4.222953e-01	ci right 4.320153e-01	k: 17086	n:40000
HAPLN1   40000 perm   27 sec   (1497 perm/sec)   p_kst 4.271500e-01   p_cons 1.892500e-02   p_joint 6.345000e-02

Joint ci ratio: 7.161122e-02	ci left: 5.451170e-02	ci right 5.857998e-02	k: 2826	n:50000
Cons ci ratio: 1.341919e-01	ci left: 1.565292e-02	ci right 1.792368e-02	k: 838	n:50000
KS ci ratio: 2.024419e-02	ci left: 4.241767e-01	ci right 4.328716e-01	k: 21426	n:50000
HAPLN1   50000 perm   32 sec   (1587 perm/sec)   p_kst 4.285200e-01   p_cons 1.676000e-02   p_joint 5.652000e-02

Joint ci ratio: 6.215719e-02	ci left: 6.023109e-02	ci right 6.411139e-02	k: 3729	n:60000
Cons ci ratio: 1.234893e-01	ci left: 1.549580e-02	ci right 1.755134e-02	k: 990	n:60000
KS ci ratio: 1.851961e-02	ci left: 4.235201e-01	ci right 4.314536e-01	k: 25649	n:60000
HAPLN1   60000 perm   41 sec   (1450 perm/sec)   p_kst 4.274833e-01   p_cons 1.650000e-02   p_joint 6.215000e-02

Joint ci ratio: 5.525101e-02	ci left: 6.522919e-02	ci right 6.894965e-02	k: 4695	n:70000
Cons ci ratio: 1.133445e-01	ci left: 1.584696e-02	ci right 1.776483e-02	k: 1175	n:70000
KS ci ratio: 1.713732e-02	ci left: 4.240594e-01	ci right 4.314037e-01	k: 29941	n:70000
HAPLN1   70000 perm   46 sec   (1511 perm/sec)   p_kst 4.277286e-01   p_cons 1.678571e-02   p_joint 6.707143e-02

Joint ci ratio: 5.403476e-02	ci left: 6.005470e-02	ci right 6.340217e-02	k: 4937	n:80000
Cons ci ratio: 1.070825e-01	ci left: 1.559207e-02	ci right 1.736825e-02	k: 1317	n:80000
KS ci ratio: 1.603762e-02	ci left: 4.240808e-01	ci right 4.309495e-01	k: 34201	n:80000
HAPLN1   80000 perm   50 sec   (1592 perm/sec)   p_kst 4.275125e-01   p_cons 1.646250e-02   p_joint 6.171250e-02

Joint ci ratio: 5.272355e-02	ci left: 5.633896e-02	ci right 5.940073e-02	k: 5207	n:90000
Cons ci ratio: 1.011928e-01	ci left: 1.556945e-02	ci right 1.723970e-02	k: 1475	n:90000
KS ci ratio: 1.510849e-02	ci left: 4.246643e-01	ci right 4.311403e-01	k: 38511	n:90000
HAPLN1   90000 perm   53 sec   (1701 perm/sec)   p_kst 4.279000e-01   p_cons 1.638889e-02   p_joint 5.785556e-02

Joint ci ratio: 5.126957e-02	ci left: 5.381225e-02	ci right 5.665362e-02	k: 5522	n:100000
Cons ci ratio: 9.582196e-02	ci left: 1.567068e-02	ci right 1.725755e-02	k: 1645	n:100000
KS ci ratio: 1.432208e-02	ci left: 4.252102e-01	ci right 4.313540e-01	k: 42828	n:100000
HAPLN1   100000 perm   56 sec   (1798 perm/sec)   p_kst 4.282800e-01   p_cons 1.645000e-02   p_joint 5.522000e-02

Outputting figure to mutsig2_images.part000000000076/HAPLN1.8_1081_100000_0.42828_0.01645_0.05522.png
                gene_name: HAPLN1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 8 percent done.
GUCY1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
GUCY1A2   10000 perm   2 sec   (5240 perm/sec)   p_kst 2.333000e-01   p_cons 6.000000e-04   p_joint 1.530000e-02

Joint ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 4.910306e-02	ci left: 2.356805e-01	ci right 2.475947e-01	k: 4832	n:20000
GUCY1A2   20000 perm   7 sec   (2880 perm/sec)   p_kst 2.416000e-01   p_cons 8.500000e-04   p_joint 8.300000e-03

Joint ci ratio: 3.214209e-01	ci left: 4.141425e-03	ci right 5.756742e-03	k: 147	n:30000
Cons ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
KS ci ratio: 4.006528e-02	ci left: 2.370296e-01	ci right 2.467538e-01	k: 7256	n:30000
GUCY1A2   30000 perm   11 sec   (2671 perm/sec)   p_kst 2.418667e-01   p_cons 8.000000e-04   p_joint 4.900000e-03

Joint ci ratio: 1.873585e-01	ci left: 9.810223e-03	ci right 1.186172e-02	k: 432	n:40000
Cons ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
KS ci ratio: 3.475208e-02	ci left: 2.371133e-01	ci right 2.455243e-01	k: 9652	n:40000
GUCY1A2   40000 perm   16 sec   (2508 perm/sec)   p_kst 2.413000e-01   p_cons 8.500000e-04   p_joint 1.080000e-02

Joint ci ratio: 1.849952e-01	ci left: 8.076307e-03	ci right 9.741460e-03	k: 444	n:50000
Cons ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
KS ci ratio: 3.112446e-02	ci left: 2.370773e-01	ci right 2.445928e-01	k: 12041	n:50000
GUCY1A2   50000 perm   20 sec   (2532 perm/sec)   p_kst 2.408200e-01   p_cons 8.200000e-04   p_joint 8.880000e-03

Joint ci ratio: 1.735275e-01	ci left: 7.701206e-03	ci right 9.180266e-03	k: 505	n:60000
Cons ci ratio: 6.274931e-01	ci left: 4.482221e-04	ci right 8.691969e-04	k: 38	n:60000
KS ci ratio: 2.845206e-02	ci left: 2.369021e-01	ci right 2.437564e-01	k: 14419	n:60000
GUCY1A2   60000 perm   23 sec   (2604 perm/sec)   p_kst 2.403167e-01   p_cons 6.333333e-04   p_joint 8.416667e-03

Joint ci ratio: 2.149511e-01	ci left: 4.220328e-03	ci right 5.249959e-03	k: 330	n:70000
Cons ci ratio: 4.649791e-01	ci left: 7.796294e-04	ci right 1.263273e-03	k: 70	n:70000
KS ci ratio: 2.605746e-02	ci left: 2.411205e-01	ci right 2.475007e-01	k: 17101	n:70000
GUCY1A2   70000 perm   26 sec   (2672 perm/sec)   p_kst 2.443000e-01   p_cons 1.000000e-03   p_joint 4.714286e-03

Joint ci ratio: 1.527732e-01	ci left: 7.538614e-03	ci right 8.797446e-03	k: 652	n:80000
Cons ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
KS ci ratio: 2.508407e-02	ci left: 2.309328e-01	ci right 2.368115e-01	k: 18709	n:80000
GUCY1A2   80000 perm   33 sec   (2444 perm/sec)   p_kst 2.338625e-01   p_cons 9.250000e-04   p_joint 8.150000e-03

Joint ci ratio: 1.440978e-01	ci left: 7.567591e-03	ci right 8.753328e-03	k: 733	n:90000
Cons ci ratio: 4.176667e-01	ci left: 7.743306e-04	ci right 1.192245e-03	k: 87	n:90000
KS ci ratio: 2.368309e-02	ci left: 2.305953e-01	ci right 2.361330e-01	k: 21002	n:90000
GUCY1A2   90000 perm   35 sec   (2540 perm/sec)   p_kst 2.333556e-01   p_cons 9.666667e-04   p_joint 8.144444e-03

Joint ci ratio: 1.469040e-01	ci left: 6.550404e-03	ci right 7.598493e-03	k: 706	n:100000
Cons ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
KS ci ratio: 2.245562e-02	ci left: 2.309305e-01	ci right 2.361850e-01	k: 23355	n:100000
GUCY1A2   100000 perm   38 sec   (2617 perm/sec)   p_kst 2.335500e-01   p_cons 9.500000e-04   p_joint 7.060000e-03

Joint ci ratio: 1.491982e-01	ci left: 5.770900e-03	ci right 6.709964e-03	k: 685	n:110000
Cons ci ratio: 3.805588e-01	ci left: 7.807879e-04	ci right 1.155419e-03	k: 105	n:110000
KS ci ratio: 2.136319e-02	ci left: 2.318447e-01	ci right 2.368602e-01	k: 25778	n:110000
GUCY1A2   110000 perm   41 sec   (2678 perm/sec)   p_kst 2.343455e-01   p_cons 9.545455e-04   p_joint 6.227273e-03

Joint ci ratio: 1.806540e-01	ci left: 3.555220e-03	ci right 4.269083e-03	k: 468	n:120000
Cons ci ratio: 3.622259e-01	ci left: 7.988391e-04	ci right 1.159313e-03	k: 116	n:120000
KS ci ratio: 2.043593e-02	ci left: 2.322629e-01	ci right 2.370666e-01	k: 28159	n:120000
GUCY1A2   120000 perm   44 sec   (2726 perm/sec)   p_kst 2.346583e-01   p_cons 9.666667e-04   p_joint 3.900000e-03

Joint ci ratio: 1.732390e-01	ci left: 3.583166e-03	ci right 4.270022e-03	k: 509	n:130000
Cons ci ratio: 3.490507e-01	ci left: 8.004376e-04	ci right 1.145524e-03	k: 125	n:130000
KS ci ratio: 1.964964e-02	ci left: 2.320763e-01	ci right 2.366894e-01	k: 30469	n:130000
GUCY1A2   130000 perm   47 sec   (2765 perm/sec)   p_kst 2.343769e-01   p_cons 9.615385e-04   p_joint 3.915385e-03

Joint ci ratio: 1.720822e-01	ci left: 3.375033e-03	ci right 4.017221e-03	k: 516	n:140000
Cons ci ratio: 3.397444e-01	ci left: 7.889387e-04	ci right 1.118010e-03	k: 132	n:140000
KS ci ratio: 1.891787e-02	ci left: 2.324819e-01	ci right 2.369291e-01	k: 32858	n:140000
GUCY1A2   140000 perm   50 sec   (2797 perm/sec)   p_kst 2.347000e-01   p_cons 9.428571e-04   p_joint 3.685714e-03

Joint ci ratio: 1.674544e-01	ci left: 3.335145e-03	ci right 3.950954e-03	k: 545	n:150000
Cons ci ratio: 3.311447e-01	ci left: 7.790789e-04	ci right 1.094060e-03	k: 139	n:150000
KS ci ratio: 1.825542e-02	ci left: 2.329691e-01	ci right 2.372678e-01	k: 35267	n:150000
GUCY1A2   150000 perm   53 sec   (2822 perm/sec)   p_kst 2.351133e-01   p_cons 9.266667e-04   p_joint 3.633333e-03

Joint ci ratio: 1.701523e-01	ci left: 3.024895e-03	ci right 3.593339e-03	k: 528	n:160000
Cons ci ratio: 3.220719e-01	ci left: 7.762876e-04	ci right 1.079767e-03	k: 147	n:160000
KS ci ratio: 1.766720e-02	ci left: 2.332107e-01	ci right 2.373738e-01	k: 37646	n:160000
GUCY1A2   160000 perm   56 sec   (2842 perm/sec)   p_kst 2.352875e-01   p_cons 9.187500e-04   p_joint 3.300000e-03

Joint ci ratio: 1.144040e-01	ci left: 6.466263e-03	ci right 7.256577e-03	k: 1165	n:170000
Cons ci ratio: 3.137062e-01	ci left: 7.739285e-04	ci right 1.067052e-03	k: 155	n:170000
KS ci ratio: 1.714725e-02	ci left: 2.331151e-01	ci right 2.371528e-01	k: 39972	n:170000
GUCY1A2   170000 perm   60 sec   (2855 perm/sec)   p_kst 2.351294e-01   p_cons 9.117647e-04   p_joint 6.852941e-03

Joint ci ratio: 1.002867e-01	ci left: 7.994370e-03	ci right 8.843798e-03	k: 1514	n:180000
Cons ci ratio: 3.022926e-01	ci left: 7.924499e-04	ci right 1.079571e-03	k: 167	n:180000
KS ci ratio: 1.665651e-02	ci left: 2.333364e-01	ci right 2.372611e-01	k: 42353	n:180000
GUCY1A2   180000 perm   63 sec   (2864 perm/sec)   p_kst 2.352944e-01   p_cons 9.277778e-04   p_joint 8.411111e-03

Joint ci ratio: 9.858536e-02	ci left: 7.845594e-03	ci right 8.664253e-03	k: 1567	n:190000
Cons ci ratio: 2.961869e-01	ci left: 7.848182e-04	ci right 1.062352e-03	k: 174	n:190000
KS ci ratio: 1.621178e-02	ci left: 2.333993e-01	ci right 2.372193e-01	k: 44708	n:190000
GUCY1A2   190000 perm   66 sec   (2872 perm/sec)   p_kst 2.353053e-01   p_cons 9.157895e-04   p_joint 8.247368e-03

Joint ci ratio: 9.876472e-02	ci left: 7.428852e-03	ci right 8.205515e-03	k: 1562	n:200000
Cons ci ratio: 2.857603e-01	ci left: 8.058363e-04	ci right 1.078962e-03	k: 187	n:200000
KS ci ratio: 1.580900e-02	ci left: 2.332728e-01	ci right 2.369949e-01	k: 47026	n:200000
GUCY1A2   200000 perm   70 sec   (2877 perm/sec)   p_kst 2.351300e-01   p_cons 9.350000e-04   p_joint 7.810000e-03

Joint ci ratio: 8.556632e-02	ci left: 9.471629e-03	ci right 1.032293e-02	k: 2077	n:210000
Cons ci ratio: 2.770532e-01	ci left: 8.205754e-04	ci right 1.088746e-03	k: 199	n:210000
KS ci ratio: 1.543073e-02	ci left: 2.332543e-01	ci right 2.368863e-01	k: 49364	n:210000
GUCY1A2   210000 perm   73 sec   (2879 perm/sec)   p_kst 2.350667e-01   p_cons 9.476190e-04   p_joint 9.890476e-03

Joint ci ratio: 9.599451e-02	ci left: 7.161453e-03	ci right 7.887976e-03	k: 1654	n:220000
Cons ci ratio: 2.703760e-01	ci left: 8.256124e-04	ci right 1.087823e-03	k: 209	n:220000
KS ci ratio: 1.481591e-02	ci left: 2.395948e-01	ci right 2.431756e-01	k: 53104	n:220000
GUCY1A2   220000 perm   76 sec   (2879 perm/sec)   p_kst 2.413818e-01   p_cons 9.500000e-04   p_joint 7.518182e-03

Joint ci ratio: 9.486239e-02	ci left: 7.019824e-03	ci right 7.723112e-03	k: 1694	n:230000
Cons ci ratio: 2.629656e-01	ci left: 8.384036e-04	ci right 1.096178e-03	k: 221	n:230000
KS ci ratio: 1.449470e-02	ci left: 2.395221e-01	ci right 2.430235e-01	k: 55492	n:230000
GUCY1A2   230000 perm   80 sec   (2875 perm/sec)   p_kst 2.412696e-01   p_cons 9.608696e-04   p_joint 7.365217e-03

Joint ci ratio: 9.376914e-02	ci left: 6.890044e-03	ci right 7.571937e-03	k: 1734	n:240000
Cons ci ratio: 2.589167e-01	ci left: 8.307288e-04	ci right 1.081575e-03	k: 228	n:240000
KS ci ratio: 1.417672e-02	ci left: 2.398885e-01	ci right 2.433177e-01	k: 57984	n:240000
GUCY1A2   240000 perm   84 sec   (2871 perm/sec)   p_kst 2.416000e-01   p_cons 9.500000e-04   p_joint 7.225000e-03

Joint ci ratio: 9.193336e-02	ci left: 6.887940e-03	ci right 7.555561e-03	k: 1804	n:250000
Cons ci ratio: 2.534420e-01	ci left: 8.349318e-04	ci right 1.080875e-03	k: 238	n:250000
KS ci ratio: 1.389182e-02	ci left: 2.398832e-01	ci right 2.432428e-01	k: 60390	n:250000
GUCY1A2   250000 perm   87 sec   (2864 perm/sec)   p_kst 2.415600e-01   p_cons 9.520000e-04   p_joint 7.216000e-03

Joint ci ratio: 9.222964e-02	ci left: 6.581638e-03	ci right 7.221736e-03	k: 1793	n:260000
Cons ci ratio: 2.473083e-01	ci left: 8.460780e-04	ci right 1.088345e-03	k: 250	n:260000
KS ci ratio: 1.362314e-02	ci left: 2.398865e-01	ci right 2.431808e-01	k: 62798	n:260000
GUCY1A2   260000 perm   91 sec   (2855 perm/sec)   p_kst 2.415308e-01   p_cons 9.615385e-04   p_joint 6.896154e-03

Joint ci ratio: 9.305433e-02	ci left: 6.225666e-03	ci right 6.836851e-03	k: 1762	n:270000
Cons ci ratio: 2.406850e-01	ci left: 8.634249e-04	ci right 1.103050e-03	k: 264	n:270000
KS ci ratio: 1.337975e-02	ci left: 2.396094e-01	ci right 2.428406e-01	k: 65130	n:270000
GUCY1A2   270000 perm   95 sec   (2844 perm/sec)   p_kst 2.412222e-01   p_cons 9.777778e-04   p_joint 6.525926e-03

Joint ci ratio: 9.168841e-02	ci left: 6.188228e-03	ci right 6.786341e-03	k: 1815	n:280000
Cons ci ratio: 2.354130e-01	ci left: 8.728902e-04	ci right 1.109063e-03	k: 276	n:280000
KS ci ratio: 1.313677e-02	ci left: 2.396911e-01	ci right 2.428642e-01	k: 67557	n:280000
GUCY1A2   280000 perm   99 sec   (2834 perm/sec)   p_kst 2.412750e-01   p_cons 9.857143e-04   p_joint 6.482143e-03

Joint ci ratio: 9.028371e-02	ci left: 6.166917e-03	ci right 6.753356e-03	k: 1872	n:290000
Cons ci ratio: 2.320862e-01	ci left: 8.687611e-04	ci right 1.100019e-03	k: 284	n:290000
KS ci ratio: 1.290899e-02	ci left: 2.396989e-01	ci right 2.428166e-01	k: 69964	n:290000
GUCY1A2   290000 perm   103 sec   (2821 perm/sec)   p_kst 2.412552e-01   p_cons 9.793103e-04   p_joint 6.455172e-03

Joint ci ratio: 9.127951e-02	ci left: 5.831001e-03	ci right 6.391938e-03	k: 1832	n:300000
Cons ci ratio: 2.250840e-01	ci left: 8.963689e-04	ci right 1.126779e-03	k: 302	n:300000
KS ci ratio: 1.269440e-02	ci left: 2.396567e-01	ci right 2.427217e-01	k: 72356	n:300000
GUCY1A2   300000 perm   107 sec   (2808 perm/sec)   p_kst 2.411867e-01   p_cons 1.006667e-03   p_joint 6.106667e-03

Joint ci ratio: 8.982144e-02	ci left: 5.832069e-03	ci right 6.383676e-03	k: 1892	n:310000
Cons ci ratio: 2.214593e-01	ci left: 8.979080e-04	ci right 1.124490e-03	k: 312	n:310000
KS ci ratio: 1.248719e-02	ci left: 2.397045e-01	ci right 2.427197e-01	k: 74775	n:310000
GUCY1A2   310000 perm   111 sec   (2793 perm/sec)   p_kst 2.412097e-01   p_cons 1.006452e-03   p_joint 6.103226e-03

Joint ci ratio: 7.868200e-02	ci left: 7.393916e-03	ci right 8.002551e-03	k: 2462	n:320000
Cons ci ratio: 2.173317e-01	ci left: 9.052882e-04	ci right 1.128907e-03	k: 324	n:320000
KS ci ratio: 1.245421e-02	ci left: 2.349288e-01	ci right 2.378760e-01	k: 75648	n:320000
GUCY1A2   320000 perm   115 sec   (2778 perm/sec)   p_kst 2.364000e-01   p_cons 1.012500e-03   p_joint 7.693750e-03

Joint ci ratio: 7.833951e-02	ci left: 7.235192e-03	ci right 7.828050e-03	k: 2484	n:330000
Cons ci ratio: 2.153543e-01	ci left: 8.950514e-04	ci right 1.113864e-03	k: 330	n:330000
KS ci ratio: 1.226602e-02	ci left: 2.348938e-01	ci right 2.377957e-01	k: 77993	n:330000
GUCY1A2   330000 perm   119 sec   (2762 perm/sec)   p_kst 2.363424e-01   p_cons 1.000000e-03   p_joint 7.527273e-03

Joint ci ratio: 8.163947e-02	ci left: 6.460224e-03	ci right 7.012939e-03	k: 2289	n:340000
Cons ci ratio: 2.127987e-01	ci left: 8.909941e-04	ci right 1.105892e-03	k: 338	n:340000
KS ci ratio: 1.208769e-02	ci left: 2.348142e-01	ci right 2.376727e-01	k: 80322	n:340000
GUCY1A2   340000 perm   124 sec   (2746 perm/sec)   p_kst 2.362412e-01   p_cons 9.941176e-04   p_joint 6.732353e-03

Joint ci ratio: 8.122007e-02	ci left: 6.342806e-03	ci right 6.882554e-03	k: 2313	n:350000
Cons ci ratio: 2.103320e-01	ci left: 8.871830e-04	ci right 1.098362e-03	k: 346	n:350000
KS ci ratio: 1.191200e-02	ci left: 2.348877e-01	ci right 2.377052e-01	k: 82703	n:350000
GUCY1A2   350000 perm   128 sec   (2730 perm/sec)   p_kst 2.362943e-01   p_cons 9.885714e-04   p_joint 6.608571e-03

Joint ci ratio: 8.039261e-02	ci left: 6.297250e-03	ci right 6.827406e-03	k: 2361	n:360000
Cons ci ratio: 2.070751e-01	ci left: 8.914980e-04	ci right 1.100002e-03	k: 357	n:360000
KS ci ratio: 1.174819e-02	ci left: 2.348216e-01	ci right 2.375993e-01	k: 85035	n:360000
GUCY1A2   360000 perm   133 sec   (2714 perm/sec)   p_kst 2.362083e-01   p_cons 9.916667e-04   p_joint 6.558333e-03

Joint ci ratio: 8.349772e-02	ci left: 5.674283e-03	ci right 6.171341e-03	k: 2190	n:370000
Cons ci ratio: 2.042422e-01	ci left: 8.930387e-04	ci right 1.098689e-03	k: 367	n:370000
KS ci ratio: 1.158749e-02	ci left: 2.348672e-01	ci right 2.376072e-01	k: 87407	n:370000
GUCY1A2   370000 perm   137 sec   (2696 perm/sec)   p_kst 2.362351e-01   p_cons 9.918919e-04   p_joint 5.918919e-03

Joint ci ratio: 8.340860e-02	ci left: 5.537826e-03	ci right 6.022388e-03	k: 2195	n:380000
Cons ci ratio: 2.007267e-01	ci left: 9.020142e-04	ci right 1.105718e-03	k: 380	n:380000
KS ci ratio: 1.143479e-02	ci left: 2.348607e-01	ci right 2.375643e-01	k: 89760	n:380000
GUCY1A2   380000 perm   142 sec   (2679 perm/sec)   p_kst 2.362105e-01   p_cons 1.000000e-03   p_joint 5.776316e-03

Joint ci ratio: 8.210889e-02	ci left: 5.571607e-03	ci right 6.051164e-03	k: 2265	n:390000
Cons ci ratio: 1.976379e-01	ci left: 9.081207e-04	ci right 1.109668e-03	k: 392	n:390000
KS ci ratio: 1.129110e-02	ci left: 2.347550e-01	ci right 2.374232e-01	k: 92074	n:390000
GUCY1A2   390000 perm   147 sec   (2660 perm/sec)   p_kst 2.360872e-01   p_cons 1.005128e-03   p_joint 5.807692e-03

Joint ci ratio: 8.143103e-02	ci left: 5.525369e-03	ci right 5.996834e-03	k: 2303	n:400000
Cons ci ratio: 1.954133e-01	ci left: 9.068106e-04	ci right 1.105532e-03	k: 401	n:400000
KS ci ratio: 1.114520e-02	ci left: 2.348969e-01	ci right 2.375320e-01	k: 94485	n:400000
GUCY1A2   400000 perm   151 sec   (2642 perm/sec)   p_kst 2.362125e-01   p_cons 1.002500e-03   p_joint 5.757500e-03

Joint ci ratio: 8.047641e-02	ci left: 5.522034e-03	ci right 5.987431e-03	k: 2358	n:410000
Cons ci ratio: 1.927932e-01	ci left: 9.102189e-04	ci right 1.106699e-03	k: 412	n:410000
KS ci ratio: 1.100934e-02	ci left: 2.348835e-01	ci right 2.374861e-01	k: 96835	n:410000
GUCY1A2   410000 perm   156 sec   (2624 perm/sec)   p_kst 2.361829e-01   p_cons 1.004878e-03   p_joint 5.751220e-03

Joint ci ratio: 7.938937e-02	ci left: 5.542228e-03	ci right 6.002726e-03	k: 2423	n:420000
Cons ci ratio: 1.905007e-01	ci left: 9.112142e-04	ci right 1.105299e-03	k: 422	n:420000
KS ci ratio: 1.087640e-02	ci left: 2.349351e-01	ci right 2.375066e-01	k: 99212	n:420000
GUCY1A2   420000 perm   161 sec   (2608 perm/sec)   p_kst 2.362190e-01   p_cons 1.004762e-03   p_joint 5.769048e-03

Joint ci ratio: 7.844038e-02	ci left: 5.547841e-03	ci right 6.003043e-03	k: 2482	n:430000
Cons ci ratio: 1.880708e-01	ci left: 9.143926e-04	ci right 1.106387e-03	k: 433	n:430000
KS ci ratio: 1.075108e-02	ci left: 2.348870e-01	ci right 2.374282e-01	k: 101547	n:430000
GUCY1A2   430000 perm   166 sec   (2590 perm/sec)   p_kst 2.361558e-01   p_cons 1.006977e-03   p_joint 5.772093e-03

Joint ci ratio: 8.042376e-02	ci left: 5.154401e-03	ci right 5.588515e-03	k: 2362	n:440000
Cons ci ratio: 1.853152e-01	ci left: 9.217759e-04	ci right 1.112166e-03	k: 446	n:440000
KS ci ratio: 1.062550e-02	ci left: 2.349932e-01	ci right 2.375057e-01	k: 103949	n:440000
GUCY1A2   440000 perm   171 sec   (2572 perm/sec)   p_kst 2.362477e-01   p_cons 1.013636e-03   p_joint 5.368182e-03

Joint ci ratio: 8.039440e-02	ci left: 5.044202e-03	ci right 5.468873e-03	k: 2364	n:450000
Cons ci ratio: 1.840847e-01	ci left: 9.140085e-04	ci right 1.101401e-03	k: 452	n:450000
KS ci ratio: 1.050603e-02	ci left: 2.350328e-01	ci right 2.375173e-01	k: 106323	n:450000
GUCY1A2   450000 perm   176 sec   (2555 perm/sec)   p_kst 2.362733e-01   p_cons 1.004444e-03   p_joint 5.253333e-03

Joint ci ratio: 8.440219e-02	ci left: 4.470336e-03	ci right 4.866378e-03	k: 2146	n:460000
Cons ci ratio: 2.197465e-01	ci left: 6.153708e-04	ci right 7.692919e-04	k: 317	n:460000
KS ci ratio: 1.039344e-02	ci left: 2.349688e-01	ci right 2.374258e-01	k: 108650	n:460000
GUCY1A2   460000 perm   181 sec   (2538 perm/sec)   p_kst 2.361957e-01   p_cons 6.891304e-04   p_joint 4.665217e-03

Joint ci ratio: 8.343594e-02	ci left: 4.479373e-03	ci right 4.871452e-03	k: 2196	n:470000
Cons ci ratio: 2.180394e-01	ci left: 6.123328e-04	ci right 7.641448e-04	k: 322	n:470000
KS ci ratio: 1.028167e-02	ci left: 2.350032e-01	ci right 2.374340e-01	k: 111022	n:470000
GUCY1A2   470000 perm   187 sec   (2520 perm/sec)   p_kst 2.362170e-01   p_cons 6.851064e-04   p_joint 4.672340e-03

Joint ci ratio: 8.233663e-02	ci left: 4.506425e-03	ci right 4.895424e-03	k: 2255	n:480000
Cons ci ratio: 2.160423e-01	ci left: 6.113963e-04	ci right 7.614036e-04	k: 328	n:480000
KS ci ratio: 1.017038e-02	ci left: 2.351445e-01	ci right 2.375503e-01	k: 113446	n:480000
GUCY1A2   480000 perm   192 sec   (2503 perm/sec)   p_kst 2.363458e-01   p_cons 6.833333e-04   p_joint 4.697917e-03

Joint ci ratio: 8.149213e-02	ci left: 4.508410e-03	ci right 4.893400e-03	k: 2302	n:490000
Cons ci ratio: 2.153897e-01	ci left: 6.027797e-04	ci right 7.501670e-04	k: 330	n:490000
KS ci ratio: 1.007133e-02	ci left: 2.349685e-01	ci right 2.373489e-01	k: 115717	n:490000
GUCY1A2   490000 perm   197 sec   (2485 perm/sec)   p_kst 2.361571e-01   p_cons 6.734694e-04   p_joint 4.697959e-03

Joint ci ratio: 8.169221e-02	ci left: 4.396681e-03	ci right 4.773095e-03	k: 2291	n:500000
Cons ci ratio: 2.122073e-01	ci left: 6.096535e-04	ci right 7.562326e-04	k: 340	n:500000
KS ci ratio: 9.972630e-03	ci left: 2.348894e-01	ci right 2.372456e-01	k: 118033	n:500000
GUCY1A2   500000 perm   203 sec   (2467 perm/sec)   p_kst 2.360660e-01   p_cons 6.800000e-04   p_joint 4.582000e-03

Joint ci ratio: 8.222004e-02	ci left: 4.254761e-03	ci right 4.621492e-03	k: 2262	n:510000
Cons ci ratio: 2.112807e-01	ci left: 6.032697e-04	ci right 7.475986e-04	k: 343	n:510000
KS ci ratio: 9.874787e-03	ci left: 2.348860e-01	ci right 2.372189e-01	k: 120386	n:510000
GUCY1A2   510000 perm   208 sec   (2450 perm/sec)   p_kst 2.360510e-01   p_cons 6.725490e-04   p_joint 4.435294e-03

Joint ci ratio: 8.364617e-02	ci left: 4.029797e-03	ci right 4.383455e-03	k: 2186	n:520000
Cons ci ratio: 2.097622e-01	ci left: 6.007768e-04	ci right 7.433434e-04	k: 348	n:520000
KS ci ratio: 9.783421e-03	ci left: 2.347485e-01	ci right 2.370583e-01	k: 122669	n:520000
GUCY1A2   520000 perm   214 sec   (2432 perm/sec)   p_kst 2.359019e-01   p_cons 6.692308e-04   p_joint 4.203846e-03

Joint ci ratio: 8.292913e-02	ci left: 4.023967e-03	ci right 4.373940e-03	k: 2224	n:530000
Cons ci ratio: 2.082759e-01	ci left: 5.983814e-04	ci right 7.392452e-04	k: 353	n:530000
KS ci ratio: 9.688659e-03	ci left: 2.348347e-01	ci right 2.371229e-01	k: 125068	n:530000
GUCY1A2   530000 perm   220 sec   (2413 perm/sec)   p_kst 2.359774e-01   p_cons 6.660377e-04   p_joint 4.196226e-03

Joint ci ratio: 8.201215e-02	ci left: 4.040133e-03	ci right 4.387441e-03	k: 2274	n:540000
Cons ci ratio: 2.059614e-01	ci left: 6.013469e-04	ci right 7.411375e-04	k: 361	n:540000
KS ci ratio: 9.598815e-03	ci left: 2.348347e-01	ci right 2.371015e-01	k: 127422	n:540000
GUCY1A2   540000 perm   226 sec   (2395 perm/sec)   p_kst 2.359667e-01   p_cons 6.685185e-04   p_joint 4.211111e-03

Joint ci ratio: 8.145986e-02	ci left: 4.021886e-03	ci right 4.365187e-03	k: 2305	n:550000
Cons ci ratio: 2.039984e-01	ci left: 6.024873e-04	ci right 7.410419e-04	k: 368	n:550000
KS ci ratio: 9.510227e-03	ci left: 2.348801e-01	ci right 2.371263e-01	k: 129801	n:550000
GUCY1A2   550000 perm   232 sec   (2367 perm/sec)   p_kst 2.360018e-01   p_cons 6.690909e-04   p_joint 4.190909e-03

Joint ci ratio: 8.074528e-02	ci left: 4.021796e-03	ci right 4.361936e-03	k: 2346	n:560000
Cons ci ratio: 2.023600e-01	ci left: 6.018978e-04	ci right 7.390677e-04	k: 374	n:560000
KS ci ratio: 9.421201e-03	ci left: 2.350327e-01	ci right 2.372593e-01	k: 132241	n:560000
GUCY1A2   560000 perm   239 sec   (2342 perm/sec)   p_kst 2.361446e-01   p_cons 6.678571e-04   p_joint 4.189286e-03

Joint ci ratio: 8.434186e-02	ci left: 3.616159e-03	ci right 3.936285e-03	k: 2151	n:570000
Cons ci ratio: 1.994550e-01	ci left: 6.096660e-04	ci right 7.463690e-04	k: 385	n:570000
KS ci ratio: 9.353681e-03	ci left: 2.344462e-01	ci right 2.366512e-01	k: 134262	n:570000
GUCY1A2   570000 perm   246 sec   (2317 perm/sec)   p_kst 2.355474e-01   p_cons 6.754386e-04   p_joint 3.773684e-03

Joint ci ratio: 7.181812e-02	ci left: 4.926760e-03	ci right 5.295451e-03	k: 2963	n:580000
Cons ci ratio: 1.976707e-01	ci left: 6.106235e-04	ci right 7.461687e-04	k: 392	n:580000
KS ci ratio: 9.271696e-03	ci left: 2.344945e-01	ci right 2.366805e-01	k: 136640	n:580000
GUCY1A2   580000 perm   259 sec   (2241 perm/sec)   p_kst 2.355862e-01   p_cons 6.758621e-04   p_joint 5.108621e-03

Joint ci ratio: 7.110153e-02	ci left: 4.943135e-03	ci right 5.309208e-03	k: 3023	n:590000
Cons ci ratio: 1.961789e-01	ci left: 6.099420e-04	ci right 7.441921e-04	k: 398	n:590000
KS ci ratio: 9.187809e-03	ci left: 2.346987e-01	ci right 2.368666e-01	k: 139111	n:590000
GUCY1A2   590000 perm   278 sec   (2122 perm/sec)   p_kst 2.357814e-01   p_cons 6.745763e-04   p_joint 5.123729e-03

Joint ci ratio: 7.059027e-02	ci left: 4.932783e-03	ci right 5.295354e-03	k: 3067	n:600000
Cons ci ratio: 1.949615e-01	ci left: 6.077015e-04	ci right 7.405299e-04	k: 403	n:600000
KS ci ratio: 9.111042e-03	ci left: 2.347030e-01	ci right 2.368528e-01	k: 141466	n:600000
GUCY1A2   600000 perm   292 sec   (2052 perm/sec)   p_kst 2.357767e-01   p_cons 6.716667e-04   p_joint 5.111667e-03

Joint ci ratio: 6.998822e-02	ci left: 4.937276e-03	ci right 5.296957e-03	k: 3120	n:610000
Cons ci ratio: 1.940038e-01	ci left: 6.039772e-04	ci right 7.352665e-04	k: 407	n:610000
KS ci ratio: 9.032633e-03	ci left: 2.348481e-01	ci right 2.369806e-01	k: 143907	n:610000
GUCY1A2   610000 perm   305 sec   (1997 perm/sec)   p_kst 2.359131e-01   p_cons 6.672131e-04   p_joint 5.114754e-03

Joint ci ratio: 6.937936e-02	ci left: 4.944807e-03	ci right 5.301777e-03	k: 3175	n:620000
Cons ci ratio: 1.923607e-01	ci left: 6.049799e-04	ci right 7.352430e-04	k: 414	n:620000
KS ci ratio: 8.957976e-03	ci left: 2.349177e-01	ci right 2.370331e-01	k: 146304	n:620000
GUCY1A2   620000 perm   319 sec   (1945 perm/sec)   p_kst 2.359742e-01   p_cons 6.677419e-04   p_joint 5.120968e-03

Joint ci ratio: 6.878611e-02	ci left: 4.952112e-03	ci right 5.306430e-03	k: 3230	n:630000
Cons ci ratio: 1.912125e-01	ci left: 6.029324e-04	ci right 7.318897e-04	k: 419	n:630000
KS ci ratio: 8.886626e-03	ci left: 2.349250e-01	ci right 2.370235e-01	k: 148663	n:630000
GUCY1A2   630000 perm   333 sec   (1894 perm/sec)   p_kst 2.359730e-01   p_cons 6.650794e-04   p_joint 5.126984e-03

Joint ci ratio: 6.997413e-02	ci left: 4.708892e-03	ci right 5.051863e-03	k: 3122	n:640000
Cons ci ratio: 1.900846e-01	ci left: 6.009512e-04	ci right 7.286389e-04	k: 424	n:640000
KS ci ratio: 8.816535e-03	ci left: 2.349492e-01	ci right 2.370313e-01	k: 151033	n:640000
GUCY1A2   640000 perm   346 sec   (1847 perm/sec)   p_kst 2.359891e-01   p_cons 6.625000e-04   p_joint 4.878125e-03

Joint ci ratio: 6.933278e-02	ci left: 4.724126e-03	ci right 5.064925e-03	k: 3180	n:650000
Cons ci ratio: 1.883203e-01	ci left: 6.034306e-04	ci right 7.303190e-04	k: 432	n:650000
KS ci ratio: 8.745128e-03	ci left: 2.350941e-01	ci right 2.371606e-01	k: 153482	n:650000
GUCY1A2   650000 perm   360 sec   (1804 perm/sec)   p_kst 2.361262e-01   p_cons 6.646154e-04   p_joint 4.892308e-03

Joint ci ratio: 6.979991e-02	ci left: 4.590008e-03	ci right 4.923453e-03	k: 3138	n:660000
Cons ci ratio: 1.872425e-01	ci left: 6.015073e-04	ci right 7.271851e-04	k: 437	n:660000
KS ci ratio: 8.677906e-03	ci left: 2.351318e-01	ci right 2.371826e-01	k: 155863	n:660000
GUCY1A2   660000 perm   374 sec   (1764 perm/sec)   p_kst 2.361561e-01   p_cons 6.621212e-04   p_joint 4.754545e-03

Joint ci ratio: 7.273564e-02	ci left: 4.159377e-03	ci right 4.474784e-03	k: 2891	n:670000
Cons ci ratio: 1.861831e-01	ci left: 5.996434e-04	ci right 7.241428e-04	k: 442	n:670000
KS ci ratio: 8.612388e-03	ci left: 2.351610e-01	ci right 2.371965e-01	k: 158239	n:670000
GUCY1A2   670000 perm   382 sec   (1752 perm/sec)   p_kst 2.361776e-01   p_cons 6.597015e-04   p_joint 4.314925e-03

Joint ci ratio: 7.218852e-02	ci left: 4.161743e-03	ci right 4.474856e-03	k: 2935	n:680000
Cons ci ratio: 1.843199e-01	ci left: 6.034467e-04	ci right 7.273419e-04	k: 451	n:680000
KS ci ratio: 8.548820e-03	ci left: 2.351688e-01	ci right 2.371893e-01	k: 160601	n:680000
GUCY1A2   680000 perm   389 sec   (1746 perm/sec)   p_kst 2.361779e-01   p_cons 6.632353e-04   p_joint 4.316176e-03

Joint ci ratio: 7.167772e-02	ci left: 4.161202e-03	ci right 4.471967e-03	k: 2977	n:690000
Cons ci ratio: 1.835100e-01	ci left: 6.002313e-04	ci right 7.228645e-04	k: 455	n:690000
KS ci ratio: 8.486570e-03	ci left: 2.351794e-01	ci right 2.371852e-01	k: 162965	n:690000
GUCY1A2   690000 perm   396 sec   (1740 perm/sec)   p_kst 2.361812e-01   p_cons 6.594203e-04   p_joint 4.314493e-03

Joint ci ratio: 7.191068e-02	ci left: 4.075095e-03	ci right 4.380459e-03	k: 2958	n:700000
Cons ci ratio: 1.829098e-01	ci left: 5.957456e-04	ci right 7.170201e-04	k: 458	n:700000
KS ci ratio: 8.426863e-03	ci left: 2.351383e-01	ci right 2.371296e-01	k: 165293	n:700000
GUCY1A2   700000 perm   404 sec   (1734 perm/sec)   p_kst 2.361329e-01   p_cons 6.542857e-04   p_joint 4.225714e-03

Joint ci ratio: 7.212117e-02	ci left: 3.994180e-03	ci right 4.294395e-03	k: 2941	n:710000
Cons ci ratio: 1.813362e-01	ci left: 5.981088e-04	ci right 7.187018e-04	k: 466	n:710000
KS ci ratio: 8.368201e-03	ci left: 2.351069e-01	ci right 2.370840e-01	k: 167627	n:710000
GUCY1A2   710000 perm   411 sec   (1728 perm/sec)   p_kst 2.360944e-01   p_cons 6.563380e-04   p_joint 4.142254e-03

Joint ci ratio: 7.163590e-02	ci left: 3.993263e-03	ci right 4.291304e-03	k: 2981	n:720000
Cons ci ratio: 1.792370e-01	ci left: 6.043902e-04	ci right 7.246861e-04	k: 477	n:720000
KS ci ratio: 8.309948e-03	ci left: 2.351111e-01	ci right 2.370744e-01	k: 169986	n:720000
GUCY1A2   720000 perm   418 sec   (1722 perm/sec)   p_kst 2.360917e-01   p_cons 6.625000e-04   p_joint 4.140278e-03

Joint ci ratio: 7.203928e-02	ci left: 3.894160e-03	ci right 4.186510e-03	k: 2948	n:730000
Cons ci ratio: 1.786776e-01	ci left: 6.000363e-04	ci right 7.190526e-04	k: 480	n:730000
KS ci ratio: 8.252833e-03	ci left: 2.351179e-01	ci right 2.370677e-01	k: 172347	n:730000
GUCY1A2   730000 perm   426 sec   (1716 perm/sec)   p_kst 2.360918e-01   p_cons 6.575342e-04   p_joint 4.038356e-03

Joint ci ratio: 7.157970e-02	ci left: 3.891965e-03	ci right 4.182209e-03	k: 2986	n:740000
Cons ci ratio: 1.781234e-01	ci left: 5.958006e-04	ci right 7.135707e-04	k: 483	n:740000
KS ci ratio: 8.196387e-03	ci left: 2.351462e-01	ci right 2.370828e-01	k: 174724	n:740000
GUCY1A2   740000 perm   433 sec   (1709 perm/sec)   p_kst 2.361135e-01   p_cons 6.527027e-04   p_joint 4.035135e-03

Joint ci ratio: 7.106985e-02	ci left: 3.896383e-03	ci right 4.184801e-03	k: 3029	n:750000
Cons ci ratio: 1.768491e-01	ci left: 5.967753e-04	ci right 7.138039e-04	k: 490	n:750000
KS ci ratio: 8.141716e-03	ci left: 2.351459e-01	ci right 2.370695e-01	k: 177080	n:750000
GUCY1A2   750000 perm   440 sec   (1703 perm/sec)   p_kst 2.361067e-01   p_cons 6.533333e-04   p_joint 4.038667e-03

Joint ci ratio: 6.903133e-02	ci left: 4.079115e-03	ci right 4.372052e-03	k: 3210	n:760000
Cons ci ratio: 1.747262e-01	ci left: 6.040180e-04	ci right 7.208950e-04	k: 502	n:760000
KS ci ratio: 8.086561e-03	ci left: 2.352152e-01	ci right 2.371263e-01	k: 179489	n:760000
GUCY1A2   760000 perm   448 sec   (1697 perm/sec)   p_kst 2.361697e-01   p_cons 6.605263e-04   p_joint 4.223684e-03

Joint ci ratio: 6.862664e-02	ci left: 4.074641e-03	ci right 4.365472e-03	k: 3248	n:770000
Cons ci ratio: 1.736934e-01	ci left: 6.036260e-04	ci right 7.196644e-04	k: 508	n:770000
KS ci ratio: 8.035086e-03	ci left: 2.351673e-01	ci right 2.370658e-01	k: 181809	n:770000
GUCY1A2   770000 perm   456 sec   (1690 perm/sec)   p_kst 2.361156e-01   p_cons 6.597403e-04   p_joint 4.218182e-03

Joint ci ratio: 6.815615e-02	ci left: 4.079108e-03	ci right 4.368183e-03	k: 3293	n:780000
Cons ci ratio: 1.721776e-01	ci left: 6.069264e-04	ci right 7.224752e-04	k: 517	n:780000
KS ci ratio: 7.984127e-03	ci left: 2.351412e-01	ci right 2.370274e-01	k: 184145	n:780000
GUCY1A2   780000 perm   463 sec   (1683 perm/sec)   p_kst 2.360833e-01   p_cons 6.628205e-04   p_joint 4.221795e-03

Joint ci ratio: 6.757336e-02	ci left: 4.098402e-03	ci right 4.386264e-03	k: 3350	n:790000
Cons ci ratio: 1.710259e-01	ci left: 6.077240e-04	ci right 7.225709e-04	k: 524	n:790000
KS ci ratio: 7.932817e-03	ci left: 2.351752e-01	ci right 2.370495e-01	k: 186528	n:790000
GUCY1A2   790000 perm   471 sec   (1677 perm/sec)   p_kst 2.361114e-01   p_cons 6.632911e-04   p_joint 4.240506e-03

Joint ci ratio: 6.711414e-02	ci left: 4.103704e-03	ci right 4.389904e-03	k: 3396	n:800000
Cons ci ratio: 1.702174e-01	ci left: 6.061105e-04	ci right 7.200555e-04	k: 529	n:800000
KS ci ratio: 7.883467e-03	ci left: 2.351635e-01	ci right 2.370259e-01	k: 188875	n:800000
GUCY1A2   800000 perm   479 sec   (1670 perm/sec)   p_kst 2.360937e-01   p_cons 6.612500e-04   p_joint 4.245000e-03

Joint ci ratio: 6.676158e-02	ci left: 4.096741e-03	ci right 4.380896e-03	k: 3432	n:810000
Cons ci ratio: 1.694203e-01	ci left: 6.045381e-04	ci right 7.176009e-04	k: 534	n:810000
KS ci ratio: 7.835027e-03	ci left: 2.351521e-01	ci right 2.370029e-01	k: 191222	n:810000
GUCY1A2   810000 perm   487 sec   (1663 perm/sec)   p_kst 2.360765e-01   p_cons 6.592593e-04   p_joint 4.237037e-03

Joint ci ratio: 6.215803e-02	ci left: 4.676760e-03	ci right 4.977974e-03	k: 3957	n:820000
Cons ci ratio: 1.683227e-01	ci left: 6.053415e-04	ci right 7.177467e-04	k: 541	n:820000
KS ci ratio: 7.787468e-03	ci left: 2.351409e-01	ci right 2.369804e-01	k: 193569	n:820000
GUCY1A2   820000 perm   495 sec   (1657 perm/sec)   p_kst 2.360598e-01   p_cons 6.597561e-04   p_joint 4.825610e-03

Joint ci ratio: 6.307095e-02	ci left: 4.486386e-03	ci right 4.779738e-03	k: 3844	n:830000
Cons ci ratio: 1.669421e-01	ci left: 6.084368e-04	ci right 7.203969e-04	k: 550	n:830000
KS ci ratio: 7.740636e-03	ci left: 2.351361e-01	ci right 2.369645e-01	k: 195921	n:830000
GUCY1A2   830000 perm   503 sec   (1650 perm/sec)   p_kst 2.360494e-01   p_cons 6.626506e-04   p_joint 4.631325e-03

Joint ci ratio: 6.252774e-02	ci left: 4.511488e-03	ci right 4.803849e-03	k: 3911	n:840000
Cons ci ratio: 1.652998e-01	ci left: 6.137444e-04	ci right 7.254597e-04	k: 561	n:840000
KS ci ratio: 7.693014e-03	ci left: 2.352076e-01	ci right 2.370252e-01	k: 198337	n:840000
GUCY1A2   840000 perm   511 sec   (1643 perm/sec)   p_kst 2.361155e-01   p_cons 6.678571e-04   p_joint 4.655952e-03

Joint ci ratio: 6.216335e-02	ci left: 4.511686e-03	ci right 4.802294e-03	k: 3957	n:850000
Cons ci ratio: 1.645695e-01	ci left: 6.121634e-04	ci right 7.230499e-04	k: 566	n:850000
KS ci ratio: 7.647232e-03	ci left: 2.352316e-01	ci right 2.370385e-01	k: 200714	n:850000
GUCY1A2   850000 perm   520 sec   (1636 perm/sec)   p_kst 2.361341e-01   p_cons 6.658824e-04   p_joint 4.655294e-03

Joint ci ratio: 6.270852e-02	ci left: 4.381380e-03	ci right 4.666159e-03	k: 3889	n:860000
Cons ci ratio: 1.629956e-01	ci left: 6.173118e-04	ci right 7.279567e-04	k: 577	n:860000
KS ci ratio: 7.602503e-03	ci left: 2.352434e-01	ci right 2.370398e-01	k: 203081	n:860000
GUCY1A2   860000 perm   528 sec   (1629 perm/sec)   p_kst 2.361407e-01   p_cons 6.709302e-04   p_joint 4.522093e-03

Joint ci ratio: 5.904781e-02	ci left: 4.891368e-03	ci right 5.190103e-03	k: 4384	n:870000
Cons ci ratio: 1.621562e-01	ci left: 6.168322e-04	ci right 7.267663e-04	k: 583	n:870000
KS ci ratio: 7.557202e-03	ci left: 2.353193e-01	ci right 2.371055e-01	k: 205504	n:870000
GUCY1A2   870000 perm   536 sec   (1623 perm/sec)   p_kst 2.362115e-01   p_cons 6.701149e-04   p_joint 5.039080e-03

Joint ci ratio: 5.872734e-02	ci left: 4.889526e-03	ci right 5.186473e-03	k: 4432	n:880000
Cons ci ratio: 1.613296e-01	ci left: 6.163650e-04	ci right 7.256015e-04	k: 589	n:880000
KS ci ratio: 7.514972e-03	ci left: 2.352845e-01	ci right 2.370604e-01	k: 207831	n:880000
GUCY1A2   880000 perm   545 sec   (1616 perm/sec)   p_kst 2.361716e-01   p_cons 6.693182e-04   p_joint 5.036364e-03

Joint ci ratio: 5.901737e-02	ci left: 4.786977e-03	ci right 5.079181e-03	k: 4389	n:890000
Cons ci ratio: 1.610573e-01	ci left: 6.115960e-04	ci right 7.197866e-04	k: 591	n:890000
KS ci ratio: 7.471394e-03	ci left: 2.353493e-01	ci right 2.371154e-01	k: 210246	n:890000
GUCY1A2   890000 perm   553 sec   (1609 perm/sec)   p_kst 2.362315e-01   p_cons 6.640449e-04   p_joint 4.931461e-03

Joint ci ratio: 5.869738e-02	ci left: 4.786337e-03	ci right 5.076864e-03	k: 4437	n:900000
Cons ci ratio: 1.605162e-01	ci left: 6.090660e-04	ci right 7.164122e-04	k: 595	n:900000
KS ci ratio: 7.430144e-03	ci left: 2.353361e-01	ci right 2.370923e-01	k: 212592	n:900000
GUCY1A2   900000 perm   562 sec   (1602 perm/sec)   p_kst 2.362133e-01   p_cons 6.611111e-04   p_joint 4.930000e-03

Joint ci ratio: 5.839564e-02	ci left: 4.783549e-03	ci right 5.072364e-03	k: 4483	n:910000
Cons ci ratio: 1.601140e-01	ci left: 6.055373e-04	ci right 7.119685e-04	k: 598	n:910000
KS ci ratio: 7.388197e-03	ci left: 2.353902e-01	ci right 2.371368e-01	k: 214999	n:910000
GUCY1A2   910000 perm   570 sec   (1595 perm/sec)   p_kst 2.362626e-01   p_cons 6.571429e-04   p_joint 4.926374e-03

Joint ci ratio: 5.835146e-02	ci left: 4.739048e-03	ci right 5.024952e-03	k: 4490	n:920000
Cons ci ratio: 1.593182e-01	ci left: 6.052165e-04	ci right 7.110119e-04	k: 604	n:920000
KS ci ratio: 7.348368e-03	ci left: 2.353736e-01	ci right 2.371107e-01	k: 217342	n:920000
GUCY1A2   920000 perm   579 sec   (1588 perm/sec)   p_kst 2.362413e-01   p_cons 6.565217e-04   p_joint 4.880435e-03

Joint ci ratio: 5.521026e-02	ci left: 5.242514e-03	ci right 5.541224e-03	k: 5013	n:930000
Cons ci ratio: 1.582750e-01	ci left: 6.069691e-04	ci right 7.123103e-04	k: 612	n:930000
KS ci ratio: 7.101761e-03	ci left: 2.458896e-01	ci right 2.476431e-01	k: 229492	n:930000
GUCY1A2   930000 perm   588 sec   (1582 perm/sec)   p_kst 2.467656e-01   p_cons 6.580645e-04   p_joint 5.390323e-03

Joint ci ratio: 5.545141e-02	ci left: 5.141624e-03	ci right 5.435906e-03	k: 4970	n:940000
Cons ci ratio: 1.568734e-01	ci left: 6.117528e-04	ci right 7.168955e-04	k: 623	n:940000
KS ci ratio: 7.062746e-03	ci left: 2.459542e-01	ci right 2.476985e-01	k: 232016	n:940000
GUCY1A2   940000 perm   597 sec   (1575 perm/sec)   p_kst 2.468255e-01   p_cons 6.627660e-04   p_joint 5.287234e-03

Joint ci ratio: 5.565024e-02	ci left: 5.051164e-03	ci right 5.341339e-03	k: 4935	n:950000
Cons ci ratio: 1.567483e-01	ci left: 6.063245e-04	ci right 7.104433e-04	k: 624	n:950000
KS ci ratio: 7.026614e-03	ci left: 2.458986e-01	ci right 2.476335e-01	k: 234427	n:950000
GUCY1A2   950000 perm   606 sec   (1569 perm/sec)   p_kst 2.467653e-01   p_cons 6.568421e-04   p_joint 5.194737e-03

Joint ci ratio: 5.744564e-02	ci left: 4.688386e-03	ci right 4.966698e-03	k: 4633	n:960000
Cons ci ratio: 1.561252e-01	ci left: 6.050131e-04	ci right 7.084550e-04	k: 629	n:960000
KS ci ratio: 6.990659e-03	ci left: 2.458639e-01	ci right 2.475897e-01	k: 236857	n:960000
GUCY1A2   960000 perm   614 sec   (1562 perm/sec)   p_kst 2.467260e-01   p_cons 6.552083e-04   p_joint 4.826042e-03

Joint ci ratio: 5.713204e-02	ci left: 4.691877e-03	ci right 4.968825e-03	k: 4684	n:970000
Cons ci ratio: 1.549004e-01	ci left: 6.086840e-04	ci right 7.118614e-04	k: 639	n:970000
KS ci ratio: 6.954074e-03	ci left: 2.458928e-01	ci right 2.476097e-01	k: 239348	n:970000
GUCY1A2   970000 perm   623 sec   (1556 perm/sec)   p_kst 2.467505e-01   p_cons 6.587629e-04   p_joint 4.828866e-03

Joint ci ratio: 5.738010e-02	ci left: 4.603763e-03	ci right 4.876728e-03	k: 4644	n:980000
Cons ci ratio: 1.538224e-01	ci left: 6.113020e-04	ci right 7.141355e-04	k: 648	n:980000
KS ci ratio: 6.919235e-03	ci left: 2.458580e-01	ci right 2.475660e-01	k: 241777	n:980000
GUCY1A2   980000 perm   632 sec   (1549 perm/sec)   p_kst 2.467112e-01   p_cons 6.612245e-04   p_joint 4.738776e-03

Joint ci ratio: 5.711647e-02	ci left: 4.600072e-03	ci right 4.871525e-03	k: 4687	n:990000
Cons ci ratio: 1.534684e-01	ci left: 6.080409e-04	ci right 7.100688e-04	k: 651	n:990000
KS ci ratio: 6.885887e-03	ci left: 2.457714e-01	ci right 2.474705e-01	k: 244154	n:990000
GUCY1A2   990000 perm   642 sec   (1543 perm/sec)   p_kst 2.466202e-01   p_cons 6.575758e-04   p_joint 4.734343e-03

Joint ci ratio: 5.677210e-02	ci left: 4.610261e-03	ci right 4.880620e-03	k: 4744	n:1000000
Cons ci ratio: 1.531168e-01	ci left: 6.048454e-04	ci right 7.060832e-04	k: 654	n:1000000
KS ci ratio: 6.850840e-03	ci left: 2.458044e-01	ci right 2.474951e-01	k: 246649	n:1000000
GUCY1A2   1000000 perm   651 sec   (1537 perm/sec)   p_kst 2.466490e-01   p_cons 6.540000e-04   p_joint 4.744000e-03

Joint ci ratio: 5.644569e-02	ci left: 4.618300e-03	ci right 4.887523e-03	k: 4799	n:1010000
Cons ci ratio: 1.519610e-01	ci left: 6.083800e-04	ci right 7.093708e-04	k: 664	n:1010000
KS ci ratio: 6.817976e-03	ci left: 2.457468e-01	ci right 2.474289e-01	k: 249053	n:1010000
GUCY1A2   1010000 perm   660 sec   (1531 perm/sec)   p_kst 2.465871e-01   p_cons 6.574257e-04   p_joint 4.751485e-03

Joint ci ratio: 5.401343e-02	ci left: 4.998466e-03	ci right 5.276904e-03	k: 5239	n:1020000
Cons ci ratio: 1.510550e-01	ci left: 6.099613e-04	ci right 7.105564e-04	k: 672	n:1020000
KS ci ratio: 6.783253e-03	ci left: 2.458176e-01	ci right 2.474917e-01	k: 251587	n:1020000
GUCY1A2   1020000 perm   669 sec   (1525 perm/sec)   p_kst 2.466539e-01   p_cons 6.588235e-04   p_joint 5.136275e-03

Joint ci ratio: 5.375760e-02	ci left: 4.997827e-03	ci right 5.274870e-03	k: 5289	n:1030000
Cons ci ratio: 1.506082e-01	ci left: 6.077762e-04	ci right 7.076878e-04	k: 676	n:1030000
KS ci ratio: 6.749972e-03	ci left: 2.458367e-01	ci right 2.475026e-01	k: 254069	n:1030000
GUCY1A2   1030000 perm   678 sec   (1519 perm/sec)   p_kst 2.466689e-01   p_cons 6.563107e-04   p_joint 5.134951e-03

Joint ci ratio: 5.343501e-02	ci left: 5.010486e-03	ci right 5.286512e-03	k: 5353	n:1040000
Cons ci ratio: 1.493991e-01	ci left: 6.121123e-04	ci right 7.118566e-04	k: 687	n:1040000
KS ci ratio: 6.717315e-03	ci left: 2.458477e-01	ci right 2.475056e-01	k: 256543	n:1040000
GUCY1A2   1040000 perm   687 sec   (1513 perm/sec)   p_kst 2.466760e-01   p_cons 6.605769e-04   p_joint 5.147115e-03

Joint ci ratio: 5.362288e-02	ci left: 4.927995e-03	ci right 5.200461e-03	k: 5316	n:1050000
Cons ci ratio: 1.487519e-01	ci left: 6.117837e-04	ci right 7.110043e-04	k: 693	n:1050000
KS ci ratio: 6.685967e-03	ci left: 2.458119e-01	ci right 2.474619e-01	k: 258968	n:1050000
GUCY1A2   1050000 perm   697 sec   (1506 perm/sec)   p_kst 2.466362e-01   p_cons 6.600000e-04   p_joint 5.062857e-03

Joint ci ratio: 5.377686e-02	ci left: 4.853577e-03	ci right 5.122723e-03	k: 5286	n:1060000
Cons ci ratio: 1.482191e-01	ci left: 6.105539e-04	ci right 7.091889e-04	k: 698	n:1060000
KS ci ratio: 6.653719e-03	ci left: 2.458513e-01	ci right 2.474935e-01	k: 261472	n:1060000
GUCY1A2   1060000 perm   707 sec   (1500 perm/sec)   p_kst 2.466717e-01   p_cons 6.584906e-04   p_joint 4.986792e-03

Joint ci ratio: 5.353444e-02	ci left: 4.852475e-03	ci right 5.120309e-03	k: 5334	n:1070000
Cons ci ratio: 1.477970e-01	ci left: 6.084476e-04	ci right 7.064377e-04	k: 702	n:1070000
KS ci ratio: 6.621750e-03	ci left: 2.459002e-01	ci right 2.475348e-01	k: 263987	n:1070000
GUCY1A2   1070000 perm   716 sec   (1494 perm/sec)   p_kst 2.467168e-01   p_cons 6.560748e-04   p_joint 4.985047e-03

Joint ci ratio: 5.323071e-02	ci left: 4.863273e-03	ci right 5.130133e-03	k: 5395	n:1080000
Cons ci ratio: 1.473784e-01	ci left: 6.063807e-04	ci right 7.037370e-04	k: 706	n:1080000
KS ci ratio: 6.591567e-03	ci left: 2.458733e-01	ci right 2.475003e-01	k: 266421	n:1080000
GUCY1A2   1080000 perm   726 sec   (1488 perm/sec)   p_kst 2.466861e-01   p_cons 6.537037e-04   p_joint 4.995370e-03

Joint ci ratio: 5.301515e-02	ci left: 4.858486e-03	ci right 5.123971e-03	k: 5439	n:1090000
Cons ci ratio: 1.467571e-01	ci left: 6.061196e-04	ci right 7.029877e-04	k: 712	n:1090000
KS ci ratio: 6.561178e-03	ci left: 2.458818e-01	ci right 2.475012e-01	k: 268893	n:1090000
GUCY1A2   1090000 perm   736 sec   (1482 perm/sec)   p_kst 2.466908e-01   p_cons 6.532110e-04   p_joint 4.989908e-03

Joint ci ratio: 5.285063e-02	ci left: 4.844817e-03	ci right 5.108709e-03	k: 5473	n:1100000
Cons ci ratio: 1.464495e-01	ci left: 6.032366e-04	ci right 6.994242e-04	k: 715	n:1100000
KS ci ratio: 6.531812e-03	ci left: 2.458556e-01	ci right 2.474676e-01	k: 271327	n:1100000
GUCY1A2   1100000 perm   745 sec   (1476 perm/sec)   p_kst 2.466609e-01   p_cons 6.500000e-04   p_joint 4.975455e-03

Joint ci ratio: 5.263484e-02	ci left: 4.841176e-03	ci right 5.103760e-03	k: 5518	n:1110000
Cons ci ratio: 1.460423e-01	ci left: 6.012738e-04	ci right 6.968586e-04	k: 719	n:1110000
KS ci ratio: 6.502884e-03	ci left: 2.458272e-01	ci right 2.474318e-01	k: 273758	n:1110000
GUCY1A2   1110000 perm   755 sec   (1470 perm/sec)   p_kst 2.466288e-01   p_cons 6.477477e-04   p_joint 4.971171e-03

Joint ci ratio: 5.240747e-02	ci left: 4.840245e-03	ci right 5.101611e-03	k: 5566	n:1120000
Cons ci ratio: 1.451379e-01	ci left: 6.036483e-04	ci right 6.989648e-04	k: 728	n:1120000
KS ci ratio: 6.473327e-03	ci left: 2.458572e-01	ci right 2.474548e-01	k: 276254	n:1120000
GUCY1A2   1120000 perm   765 sec   (1463 perm/sec)   p_kst 2.466554e-01   p_cons 6.500000e-04   p_joint 4.969643e-03

Joint ci ratio: 5.213639e-02	ci left: 4.848068e-03	ci right 5.108461e-03	k: 5624	n:1130000
Cons ci ratio: 1.444460e-01	ci left: 6.042766e-04	ci right 6.991982e-04	k: 735	n:1130000
KS ci ratio: 6.444567e-03	ci left: 2.458638e-01	ci right 2.474543e-01	k: 278724	n:1130000
GUCY1A2   1130000 perm   776 sec   (1455 perm/sec)   p_kst 2.466584e-01   p_cons 6.504425e-04   p_joint 4.976991e-03

Joint ci ratio: 5.190620e-02	ci left: 4.848831e-03	ci right 5.108080e-03	k: 5674	n:1140000
Cons ci ratio: 1.440552e-01	ci left: 6.023580e-04	ci right 6.967002e-04	k: 739	n:1140000
KS ci ratio: 6.416975e-03	ci left: 2.458247e-01	ci right 2.474081e-01	k: 281142	n:1140000
GUCY1A2   1140000 perm   788 sec   (1447 perm/sec)   p_kst 2.466158e-01   p_cons 6.482456e-04   p_joint 4.977193e-03

Joint ci ratio: 5.166997e-02	ci left: 4.851299e-03	ci right 5.109465e-03	k: 5726	n:1150000
Cons ci ratio: 1.433786e-01	ci left: 6.029882e-04	ci right 6.969476e-04	k: 746	n:1150000
KS ci ratio: 6.388838e-03	ci left: 2.458385e-01	ci right 2.474150e-01	k: 283620	n:1150000
GUCY1A2   1150000 perm   801 sec   (1436 perm/sec)   p_kst 2.466261e-01   p_cons 6.486957e-04   p_joint 4.979130e-03

Joint ci ratio: 5.145931e-02	ci left: 4.849472e-03	ci right 5.106457e-03	k: 5773	n:1160000
Cons ci ratio: 1.429013e-01	ci left: 6.019460e-04	ci right 6.954041e-04	k: 751	n:1160000
KS ci ratio: 6.361657e-03	ci left: 2.458175e-01	ci right 2.473872e-01	k: 286058	n:1160000
GUCY1A2   1160000 perm   811 sec   (1430 perm/sec)   p_kst 2.466017e-01   p_cons 6.474138e-04   p_joint 4.976724e-03

Joint ci ratio: 5.163595e-02	ci left: 4.775115e-03	ci right 5.029055e-03	k: 5734	n:1170000
Cons ci ratio: 1.424287e-01	ci left: 6.009221e-04	ci right 6.938865e-04	k: 756	n:1170000
KS ci ratio: 6.333611e-03	ci left: 2.458678e-01	ci right 2.474308e-01	k: 288579	n:1170000
GUCY1A2   1170000 perm   822 sec   (1423 perm/sec)   p_kst 2.466487e-01   p_cons 6.461538e-04   p_joint 4.900855e-03

Joint ci ratio: 5.143017e-02	ci left: 4.773129e-03	ci right 5.025921e-03	k: 5780	n:1180000
Cons ci ratio: 1.421475e-01	ci left: 5.982813e-04	ci right 6.906390e-04	k: 759	n:1180000
KS ci ratio: 6.306710e-03	ci left: 2.458716e-01	ci right 2.474280e-01	k: 291046	n:1180000
GUCY1A2   1180000 perm   843 sec   (1399 perm/sec)   p_kst 2.466492e-01   p_cons 6.432203e-04   p_joint 4.898305e-03

Joint ci ratio: 5.201768e-02	ci left: 4.626008e-03	ci right 4.873891e-03	k: 5651	n:1190000
Cons ci ratio: 1.414973e-01	ci left: 5.989274e-04	ci right 6.909262e-04	k: 766	n:1190000
KS ci ratio: 6.279310e-03	ci left: 2.459248e-01	ci right 2.474747e-01	k: 293572	n:1190000
GUCY1A2   1190000 perm   865 sec   (1376 perm/sec)   p_kst 2.466992e-01   p_cons 6.436975e-04   p_joint 4.748739e-03

Joint ci ratio: 5.230775e-02	ci left: 4.536460e-03	ci right 4.780941e-03	k: 5589	n:1200000
Cons ci ratio: 1.408560e-01	ci left: 5.995636e-04	ci right 6.912077e-04	k: 773	n:1200000
KS ci ratio: 6.254340e-03	ci left: 2.458540e-01	ci right 2.473973e-01	k: 295950	n:1200000
GUCY1A2   1200000 perm   886 sec   (1354 perm/sec)   p_kst 2.466250e-01   p_cons 6.441667e-04   p_joint 4.657500e-03

Joint ci ratio: 5.224777e-02	ci left: 4.509570e-03	ci right 4.752315e-03	k: 5602	n:1210000
Cons ci ratio: 1.406746e-01	ci left: 5.962032e-04	ci right 6.872064e-04	k: 775	n:1210000
KS ci ratio: 6.228279e-03	ci left: 2.458669e-01	ci right 2.474038e-01	k: 298428	n:1210000
GUCY1A2   1210000 perm   908 sec   (1332 perm/sec)   p_kst 2.466347e-01   p_cons 6.404959e-04   p_joint 4.629752e-03

Joint ci ratio: 5.204387e-02	ci left: 4.508202e-03	ci right 4.749897e-03	k: 5646	n:1220000
Cons ci ratio: 1.402237e-01	ci left: 5.952706e-04	ci right 6.858159e-04	k: 780	n:1220000
KS ci ratio: 6.202637e-03	ci left: 2.458738e-01	ci right 2.474044e-01	k: 300899	n:1220000
GUCY1A2   1220000 perm   939 sec   (1299 perm/sec)   p_kst 2.466385e-01   p_cons 6.393443e-04   p_joint 4.627869e-03

Joint ci ratio: 5.176928e-02	ci left: 4.519698e-03	ci right 4.760693e-03	k: 5706	n:1230000
Cons ci ratio: 1.394225e-01	ci left: 5.974921e-04	ci right 6.878129e-04	k: 789	n:1230000
KS ci ratio: 6.178053e-03	ci left: 2.458360e-01	ci right 2.473603e-01	k: 303315	n:1230000
GUCY1A2   1230000 perm   962 sec   (1279 perm/sec)   p_kst 2.465976e-01   p_cons 6.414634e-04   p_joint 4.639024e-03

Joint ci ratio: 5.250073e-02	ci left: 4.358276e-03	ci right 4.594047e-03	k: 5549	n:1240000
Cons ci ratio: 1.388961e-01	ci left: 5.973439e-04	ci right 6.872731e-04	k: 795	n:1240000
KS ci ratio: 6.152463e-03	ci left: 2.458770e-01	ci right 2.473952e-01	k: 305828	n:1240000
GUCY1A2   1240000 perm   984 sec   (1260 perm/sec)   p_kst 2.466355e-01   p_cons 6.411290e-04   p_joint 4.475000e-03

Joint ci ratio: 5.263999e-02	ci left: 4.300512e-03	ci right 4.533794e-03	k: 5520	n:1250000
Cons ci ratio: 1.381173e-01	ci left: 5.995157e-04	ci right 6.892242e-04	k: 804	n:1250000
KS ci ratio: 6.128600e-03	ci left: 2.458318e-01	ci right 2.473438e-01	k: 308234	n:1250000
GUCY1A2   1250000 perm   1007 sec   (1242 perm/sec)   p_kst 2.465872e-01   p_cons 6.432000e-04   p_joint 4.416000e-03

Joint ci ratio: 5.250260e-02	ci left: 4.289094e-03	ci right 4.521130e-03	k: 5549	n:1260000
Cons ci ratio: 1.376055e-01	ci left: 5.993553e-04	ci right 6.886803e-04	k: 810	n:1260000
KS ci ratio: 6.103461e-03	ci left: 2.458817e-01	ci right 2.473878e-01	k: 310759	n:1260000
GUCY1A2   1260000 perm   1030 sec   (1224 perm/sec)   p_kst 2.466341e-01   p_cons 6.428571e-04   p_joint 4.403968e-03

Joint ci ratio: 5.280538e-02	ci left: 4.206363e-03	ci right 4.435276e-03	k: 5486	n:1270000
Cons ci ratio: 1.370993e-01	ci left: 5.991980e-04	ci right 6.881442e-04	k: 816	n:1270000
KS ci ratio: 6.078964e-03	ci left: 2.459103e-01	ci right 2.474105e-01	k: 313258	n:1270000
GUCY1A2   1270000 perm   1053 sec   (1206 perm/sec)   p_kst 2.466598e-01   p_cons 6.425197e-04   p_joint 4.319685e-03

Joint ci ratio: 5.261402e-02	ci left: 4.204339e-03	ci right 4.432288e-03	k: 5526	n:1280000
Cons ci ratio: 1.365157e-01	ci left: 5.997984e-04	ci right 6.884239e-04	k: 823	n:1280000
KS ci ratio: 6.054861e-03	ci left: 2.459323e-01	ci right 2.474267e-01	k: 315749	n:1280000
GUCY1A2   1280000 perm   1075 sec   (1191 perm/sec)   p_kst 2.466789e-01   p_cons 6.429687e-04   p_joint 4.317187e-03

Joint ci ratio: 5.240110e-02	ci left: 4.206173e-03	ci right 4.433271e-03	k: 5571	n:1290000
Cons ci ratio: 1.357760e-01	ci left: 6.018879e-04	ci right 6.903015e-04	k: 832	n:1290000
KS ci ratio: 6.032263e-03	ci left: 2.458788e-01	ci right 2.473673e-01	k: 318143	n:1290000
GUCY1A2   1290000 perm   1093 sec   (1180 perm/sec)   p_kst 2.466225e-01   p_cons 6.449612e-04   p_joint 4.318605e-03

Joint ci ratio: 5.215345e-02	ci left: 4.214055e-03	ci right 4.440470e-03	k: 5624	n:1300000
Cons ci ratio: 1.351286e-01	ci left: 6.032034e-04	ci right 6.913537e-04	k: 840	n:1300000
KS ci ratio: 6.008547e-03	ci left: 2.459107e-01	ci right 2.473935e-01	k: 320647	n:1300000
GUCY1A2   1300000 perm   1118 sec   (1163 perm/sec)   p_kst 2.466515e-01   p_cons 6.461538e-04   p_joint 4.326154e-03

Joint ci ratio: 5.207534e-02	ci left: 4.194693e-03	ci right 4.419721e-03	k: 5641	n:1310000
Cons ci ratio: 1.341745e-01	ci left: 6.074506e-04	ci right 6.955448e-04	k: 852	n:1310000
KS ci ratio: 5.986425e-03	ci left: 2.458605e-01	ci right 2.473375e-01	k: 323044	n:1310000
GUCY1A2   1310000 perm   1138 sec   (1151 perm/sec)   p_kst 2.465985e-01   p_cons 6.503817e-04   p_joint 4.306107e-03

Joint ci ratio: 5.194230e-02	ci left: 4.184599e-03	ci right 4.408494e-03	k: 5670	n:1320000
Cons ci ratio: 1.336273e-01	ci left: 6.079741e-04	ci right 6.957560e-04	k: 859	n:1320000
KS ci ratio: 5.963912e-03	ci left: 2.458505e-01	ci right 2.473218e-01	k: 325493	n:1320000
GUCY1A2   1320000 perm   1150 sec   (1148 perm/sec)   p_kst 2.465856e-01   p_cons 6.507576e-04   p_joint 4.295455e-03

Joint ci ratio: 4.953958e-02	ci left: 4.569613e-03	ci right 4.802477e-03	k: 6231	n:1330000
Cons ci ratio: 1.331636e-01	ci left: 6.077636e-04	ci right 6.951865e-04	k: 865	n:1330000
KS ci ratio: 5.940859e-03	ci left: 2.458902e-01	ci right 2.473560e-01	k: 328008	n:1330000
GUCY1A2   1330000 perm   1161 sec   (1145 perm/sec)   p_kst 2.466226e-01   p_cons 6.503759e-04   p_joint 4.684962e-03

Joint ci ratio: 4.970498e-02	ci left: 4.505291e-03	ci right 4.735664e-03	k: 6190	n:1340000
Cons ci ratio: 1.327809e-01	ci left: 6.068352e-04	ci right 6.938540e-04	k: 870	n:1340000
KS ci ratio: 5.918379e-03	ci left: 2.459099e-01	ci right 2.473703e-01	k: 330497	n:1340000
GUCY1A2   1340000 perm   1173 sec   (1142 perm/sec)   p_kst 2.466396e-01   p_cons 6.492537e-04   p_joint 4.619403e-03

Joint ci ratio: 4.979074e-02	ci left: 4.456553e-03	ci right 4.684839e-03	k: 6169	n:1350000
Cons ci ratio: 1.323259e-01	ci left: 6.066372e-04	ci right 6.933061e-04	k: 876	n:1350000
KS ci ratio: 5.896223e-03	ci left: 2.459249e-01	ci right 2.473799e-01	k: 332980	n:1350000
GUCY1A2   1350000 perm   1185 sec   (1140 perm/sec)   p_kst 2.466519e-01   p_cons 6.488889e-04   p_joint 4.569630e-03

Joint ci ratio: 4.991363e-02	ci left: 4.401998e-03	ci right 4.628062e-03	k: 6139	n:1360000
Cons ci ratio: 1.321004e-01	ci left: 6.043095e-04	ci right 6.904871e-04	k: 879	n:1360000
KS ci ratio: 5.874663e-03	ci left: 2.459176e-01	ci right 2.473673e-01	k: 335433	n:1360000
GUCY1A2   1360000 perm   1196 sec   (1137 perm/sec)   p_kst 2.466419e-01   p_cons 6.463235e-04   p_joint 4.513971e-03

Joint ci ratio: 4.970348e-02	ci left: 4.407350e-03	ci right 4.632709e-03	k: 6191	n:1370000
Cons ci ratio: 1.317267e-01	ci left: 6.034277e-04	ci right 6.892171e-04	k: 884	n:1370000
KS ci ratio: 5.853948e-03	ci left: 2.458718e-01	ci right 2.473161e-01	k: 337833	n:1370000
GUCY1A2   1370000 perm   1208 sec   (1134 perm/sec)   p_kst 2.465934e-01   p_cons 6.452555e-04   p_joint 4.518978e-03

Joint ci ratio: 4.966001e-02	ci left: 4.383283e-03	ci right 4.607210e-03	k: 6202	n:1380000
Cons ci ratio: 1.315042e-01	ci left: 6.011573e-04	ci right 6.864683e-04	k: 887	n:1380000
KS ci ratio: 5.833267e-03	ci left: 2.458383e-01	ci right 2.472772e-01	k: 340249	n:1380000
GUCY1A2   1380000 perm   1220 sec   (1131 perm/sec)   p_kst 2.465572e-01   p_cons 6.427536e-04   p_joint 4.494203e-03

Joint ci ratio: 4.949278e-02	ci left: 4.381590e-03	ci right 4.604655e-03	k: 6244	n:1390000
Cons ci ratio: 1.312828e-01	ci left: 5.989197e-04	ci right 6.837589e-04	k: 890	n:1390000
KS ci ratio: 5.812242e-03	ci left: 2.458412e-01	ci right 2.472750e-01	k: 342715	n:1390000
GUCY1A2   1390000 perm   1232 sec   (1128 perm/sec)   p_kst 2.465576e-01   p_cons 6.402878e-04   p_joint 4.492086e-03

Joint ci ratio: 4.933513e-02	ci left: 4.378511e-03	ci right 4.600689e-03	k: 6284	n:1400000
Cons ci ratio: 1.308430e-01	ci left: 5.987869e-04	ci right 6.833010e-04	k: 896	n:1400000
KS ci ratio: 5.791742e-03	ci left: 2.458248e-01	ci right 2.472534e-01	k: 345154	n:1400000
GUCY1A2   1400000 perm   1244 sec   (1125 perm/sec)   p_kst 2.465386e-01   p_cons 6.400000e-04   p_joint 4.488571e-03

Joint ci ratio: 4.947846e-02	ci left: 4.322239e-03	ci right 4.542216e-03	k: 6248	n:1410000
Cons ci ratio: 1.301914e-01	ci left: 6.007148e-04	ci right 6.850462e-04	k: 905	n:1410000
KS ci ratio: 5.771161e-03	ci left: 2.458278e-01	ci right 2.472513e-01	k: 347620	n:1410000
GUCY1A2   1410000 perm   1256 sec   (1122 perm/sec)   p_kst 2.465390e-01   p_cons 6.418440e-04   p_joint 4.431206e-03

Joint ci ratio: 4.930912e-02	ci left: 4.321708e-03	ci right 4.540884e-03	k: 6291	n:1420000
Cons ci ratio: 1.299050e-01	ci left: 5.992097e-04	ci right 6.831304e-04	k: 909	n:1420000
KS ci ratio: 5.750765e-03	ci left: 2.458328e-01	ci right 2.472513e-01	k: 350089	n:1420000
GUCY1A2   1420000 perm   1268 sec   (1120 perm/sec)   p_kst 2.465415e-01   p_cons 6.401408e-04   p_joint 4.430282e-03

Joint ci ratio: 4.915320e-02	ci left: 4.319114e-03	ci right 4.537446e-03	k: 6331	n:1430000
Cons ci ratio: 1.295497e-01	ci left: 5.984024e-04	ci right 6.819632e-04	k: 914	n:1430000
KS ci ratio: 5.730206e-03	ci left: 2.458623e-01	ci right 2.472758e-01	k: 352593	n:1430000
GUCY1A2   1430000 perm   1281 sec   (1117 perm/sec)   p_kst 2.465685e-01   p_cons 6.391608e-04   p_joint 4.427273e-03

Joint ci ratio: 4.791557e-02	ci left: 4.515517e-03	ci right 4.737872e-03	k: 6661	n:1440000
Cons ci ratio: 1.289870e-01	ci left: 5.996228e-04	ci right 6.829624e-04	k: 922	n:1440000
KS ci ratio: 5.711040e-03	ci left: 2.458150e-01	ci right 2.472235e-01	k: 354987	n:1440000
GUCY1A2   1440000 perm   1293 sec   (1114 perm/sec)   p_kst 2.465188e-01   p_cons 6.402778e-04   p_joint 4.625694e-03

Joint ci ratio: 4.780114e-02	ci left: 4.506180e-03	ci right 4.727530e-03	k: 6693	n:1450000
Cons ci ratio: 1.287780e-01	ci left: 5.974896e-04	ci right 6.803880e-04	k: 925	n:1450000
KS ci ratio: 5.692308e-03	ci left: 2.457525e-01	ci right 2.471561e-01	k: 357358	n:1450000
GUCY1A2   1450000 perm   1305 sec   (1111 perm/sec)   p_kst 2.464538e-01   p_cons 6.379310e-04   p_joint 4.615862e-03

Joint ci ratio: 4.766617e-02	ci left: 4.501032e-03	ci right 4.721488e-03	k: 6731	n:1460000
Cons ci ratio: 1.283628e-01	ci left: 5.973747e-04	ci right 6.799696e-04	k: 931	n:1460000
KS ci ratio: 5.672870e-03	ci left: 2.457491e-01	ci right 2.471478e-01	k: 359814	n:1460000
GUCY1A2   1460000 perm   1317 sec   (1108 perm/sec)   p_kst 2.464479e-01   p_cons 6.376712e-04   p_joint 4.610274e-03

Joint ci ratio: 4.749008e-02	ci left: 4.504022e-03	ci right 4.723787e-03	k: 6781	n:1470000
Cons ci ratio: 1.276795e-01	ci left: 5.998958e-04	ci right 6.823643e-04	k: 941	n:1470000
KS ci ratio: 5.654157e-03	ci left: 2.457110e-01	ci right 2.471049e-01	k: 362219	n:1470000
GUCY1A2   1470000 perm   1330 sec   (1105 perm/sec)   p_kst 2.464075e-01   p_cons 6.401361e-04   p_joint 4.612925e-03

Joint ci ratio: 4.731592e-02	ci left: 4.506973e-03	ci right 4.726054e-03	k: 6831	n:1480000
Cons ci ratio: 1.272077e-01	ci left: 6.004214e-04	ci right 6.826342e-04	k: 948	n:1480000
KS ci ratio: 5.634850e-03	ci left: 2.457248e-01	ci right 2.471140e-01	k: 364700	n:1480000
GUCY1A2   1480000 perm   1354 sec   (1093 perm/sec)   p_kst 2.464189e-01   p_cons 6.405405e-04   p_joint 4.615541e-03

Joint ci ratio: 4.715399e-02	ci left: 4.507896e-03	ci right 4.726252e-03	k: 6878	n:1490000
Cons ci ratio: 1.268075e-01	ci left: 6.002906e-04	ci right 6.822075e-04	k: 954	n:1490000
KS ci ratio: 5.615485e-03	ci left: 2.457552e-01	ci right 2.471398e-01	k: 367206	n:1490000
GUCY1A2   1490000 perm   1381 sec   (1079 perm/sec)   p_kst 2.464470e-01   p_cons 6.402685e-04   p_joint 4.616107e-03

Joint ci ratio: 4.774755e-02	ci left: 4.366505e-03	ci right 4.580748e-03	k: 6709	n:1500000
Cons ci ratio: 1.265429e-01	ci left: 5.988708e-04	ci right 6.804106e-04	k: 958	n:1500000
KS ci ratio: 5.596318e-03	ci left: 2.457852e-01	ci right 2.471652e-01	k: 369712	n:1500000
GUCY1A2   1500000 perm   1407 sec   (1066 perm/sec)   p_kst 2.464747e-01   p_cons 6.386667e-04   p_joint 4.472667e-03

Joint ci ratio: 4.788104e-02	ci left: 4.313375e-03	ci right 4.525619e-03	k: 6672	n:1510000
Cons ci ratio: 1.259531e-01	ci left: 6.006769e-04	ci right 6.820529e-04	k: 967	n:1510000
KS ci ratio: 5.578192e-03	ci left: 2.457585e-01	ci right 2.471339e-01	k: 372133	n:1510000
GUCY1A2   1510000 perm   1433 sec   (1054 perm/sec)   p_kst 2.464457e-01   p_cons 6.403974e-04   p_joint 4.418543e-03

Joint ci ratio: 4.773825e-02	ci left: 4.310999e-03	ci right 4.522475e-03	k: 6712	n:1520000
Cons ci ratio: 1.256292e-01	ci left: 5.999110e-04	ci right 6.809586e-04	k: 972	n:1520000
KS ci ratio: 5.559895e-03	ci left: 2.457552e-01	ci right 2.471260e-01	k: 374589	n:1520000
GUCY1A2   1520000 perm   1460 sec   (1041 perm/sec)   p_kst 2.464401e-01   p_cons 6.394737e-04   p_joint 4.415789e-03

Joint ci ratio: 4.823582e-02	ci left: 4.194348e-03	ci right 4.402307e-03	k: 6575	n:1530000
Cons ci ratio: 1.253077e-01	ci left: 5.991554e-04	ci right 6.798784e-04	k: 977	n:1530000
KS ci ratio: 5.541242e-03	ci left: 2.457879e-01	ci right 2.471543e-01	k: 377100	n:1530000
GUCY1A2   1530000 perm   1487 sec   (1029 perm/sec)   p_kst 2.464706e-01   p_cons 6.385621e-04   p_joint 4.297386e-03

Joint ci ratio: 4.806430e-02	ci left: 4.197264e-03	ci right 4.404607e-03	k: 6622	n:1540000
Cons ci ratio: 1.251161e-01	ci left: 5.971518e-04	ci right 6.774727e-04	k: 980	n:1540000
KS ci ratio: 5.522929e-03	ci left: 2.458097e-01	ci right 2.471717e-01	k: 379595	n:1540000
GUCY1A2   1540000 perm   1514 sec   (1017 perm/sec)   p_kst 2.464903e-01   p_cons 6.363636e-04   p_joint 4.300000e-03

Joint ci ratio: 4.789460e-02	ci left: 4.200144e-03	ci right 4.406876e-03	k: 6669	n:1550000
Cons ci ratio: 1.246089e-01	ci left: 5.982993e-04	ci right 6.784243e-04	k: 988	n:1550000
KS ci ratio: 5.505169e-03	ci left: 2.458062e-01	ci right 2.471638e-01	k: 382051	n:1550000
GUCY1A2   1550000 perm   1541 sec   (1006 perm/sec)   p_kst 2.464845e-01   p_cons 6.374194e-04   p_joint 4.302581e-03

Joint ci ratio: 4.774453e-02	ci left: 4.199821e-03	ci right 4.405872e-03	k: 6711	n:1560000
Cons ci ratio: 1.242952e-01	ci left: 5.975694e-04	ci right 6.773803e-04	k: 993	n:1560000
KS ci ratio: 5.487987e-03	ci left: 2.457752e-01	ci right 2.471283e-01	k: 384464	n:1560000
GUCY1A2   1560000 perm   1572 sec   (992 perm/sec)   p_kst 2.464513e-01   p_cons 6.365385e-04   p_joint 4.301923e-03

Joint ci ratio: 4.775591e-02	ci left: 4.171181e-03	ci right 4.375877e-03	k: 6708	n:1570000
Cons ci ratio: 1.237979e-01	ci left: 5.987006e-04	ci right 6.783194e-04	k: 1001	n:1570000
KS ci ratio: 5.470627e-03	ci left: 2.457675e-01	ci right 2.471163e-01	k: 386913	n:1570000
GUCY1A2   1570000 perm   1603 sec   (979 perm/sec)   p_kst 2.464414e-01   p_cons 6.375796e-04   p_joint 4.272611e-03

Joint ci ratio: 4.760006e-02	ci left: 4.172298e-03	ci right 4.376362e-03	k: 6752	n:1580000
Cons ci ratio: 1.234903e-01	ci left: 5.979781e-04	ci right 6.772886e-04	k: 1006	n:1580000
KS ci ratio: 5.452864e-03	ci left: 2.457984e-01	ci right 2.471430e-01	k: 389423	n:1580000
GUCY1A2   1580000 perm   1621 sec   (975 perm/sec)   p_kst 2.464703e-01   p_cons 6.367089e-04   p_joint 4.273418e-03

Joint ci ratio: 4.744221e-02	ci left: 4.174022e-03	ci right 4.377475e-03	k: 6797	n:1590000
Cons ci ratio: 1.228211e-01	ci left: 6.009224e-04	ci right 6.801601e-04	k: 1017	n:1590000
KS ci ratio: 5.435623e-03	ci left: 2.458051e-01	ci right 2.471455e-01	k: 391895	n:1590000
GUCY1A2   1590000 perm   1636 sec   (972 perm/sec)   p_kst 2.464748e-01   p_cons 6.396226e-04   p_joint 4.274843e-03

Joint ci ratio: 4.732763e-02	ci left: 4.168315e-03	ci right 4.370986e-03	k: 6830	n:1600000
Cons ci ratio: 1.227008e-01	ci left: 5.983782e-04	ci right 6.771975e-04	k: 1019	n:1600000
KS ci ratio: 5.418434e-03	ci left: 2.458192e-01	ci right 2.471554e-01	k: 394379	n:1600000
GUCY1A2   1600000 perm   1652 sec   (968 perm/sec)   p_kst 2.464869e-01   p_cons 6.368750e-04   p_joint 4.268750e-03

Joint ci ratio: 4.717936e-02	ci left: 4.168818e-03	ci right 4.370860e-03	k: 6873	n:1610000
Cons ci ratio: 1.223415e-01	ci left: 5.982740e-04	ci right 6.768322e-04	k: 1025	n:1610000
KS ci ratio: 5.402085e-03	ci left: 2.457867e-01	ci right 2.471186e-01	k: 396788	n:1610000
GUCY1A2   1610000 perm   1669 sec   (965 perm/sec)   p_kst 2.464522e-01   p_cons 6.366460e-04   p_joint 4.268944e-03

Joint ci ratio: 4.703590e-02	ci left: 4.168705e-03	ci right 4.370111e-03	k: 6915	n:1620000
Cons ci ratio: 1.216907e-01	ci left: 6.011639e-04	ci right 6.796514e-04	k: 1036	n:1620000
KS ci ratio: 5.386098e-03	ci left: 2.457397e-01	ci right 2.470674e-01	k: 399173	n:1620000
GUCY1A2   1620000 perm   1683 sec   (963 perm/sec)   p_kst 2.464031e-01   p_cons 6.395062e-04   p_joint 4.268519e-03

Joint ci ratio: 4.691066e-02	ci left: 4.165562e-03	ci right 4.366267e-03	k: 6952	n:1630000
Cons ci ratio: 1.215152e-01	ci left: 5.992603e-04	ci right 6.773783e-04	k: 1039	n:1630000
KS ci ratio: 5.369436e-03	ci left: 2.457497e-01	ci right 2.470733e-01	k: 401650	n:1630000
GUCY1A2   1630000 perm   1696 sec   (961 perm/sec)   p_kst 2.464110e-01   p_cons 6.374233e-04   p_joint 4.265031e-03

Joint ci ratio: 4.726068e-02	ci left: 4.078695e-03	ci right 4.276720e-03	k: 6850	n:1640000
Cons ci ratio: 1.211662e-01	ci left: 5.991537e-04	ci right 6.770175e-04	k: 1045	n:1640000
KS ci ratio: 5.352585e-03	ci left: 2.457833e-01	ci right 2.471030e-01	k: 404166	n:1640000
GUCY1A2   1640000 perm   1710 sec   (959 perm/sec)   p_kst 2.464427e-01   p_cons 6.371951e-04   p_joint 4.176829e-03

Joint ci ratio: 4.717492e-02	ci left: 4.068948e-03	ci right 4.266132e-03	k: 6875	n:1650000
Cons ci ratio: 1.205910e-01	ci left: 6.013999e-04	ci right 6.791581e-04	k: 1055	n:1650000
KS ci ratio: 5.336553e-03	ci left: 2.457705e-01	ci right 2.470862e-01	k: 406606	n:1650000
GUCY1A2   1650000 perm   1724 sec   (957 perm/sec)   p_kst 2.464279e-01   p_cons 6.393939e-04   p_joint 4.166667e-03

Joint ci ratio: 4.704516e-02	ci left: 4.067058e-03	ci right 4.263593e-03	k: 6913	n:1660000
Cons ci ratio: 1.203634e-01	ci left: 6.001140e-04	ci right 6.775490e-04	k: 1059	n:1660000
KS ci ratio: 5.319750e-03	ci left: 2.458217e-01	ci right 2.471334e-01	k: 409152	n:1660000
GUCY1A2   1660000 perm   1738 sec   (955 perm/sec)   p_kst 2.464771e-01   p_cons 6.379518e-04   p_joint 4.164458e-03

Joint ci ratio: 4.689614e-02	ci left: 4.068743e-03	ci right 4.264720e-03	k: 6957	n:1670000
Cons ci ratio: 1.199679e-01	ci left: 6.005861e-04	ci right 6.778094e-04	k: 1066	n:1670000
KS ci ratio: 5.303814e-03	ci left: 2.458226e-01	ci right 2.471304e-01	k: 411615	n:1670000
GUCY1A2   1670000 perm   1752 sec   (953 perm/sec)   p_kst 2.464760e-01   p_cons 6.383234e-04   p_joint 4.165868e-03

Joint ci ratio: 4.674518e-02	ci left: 4.070996e-03	ci right 4.266433e-03	k: 7002	n:1680000
Cons ci ratio: 1.193541e-01	ci left: 6.033629e-04	ci right 6.805182e-04	k: 1077	n:1680000
KS ci ratio: 5.288359e-03	ci left: 2.457997e-01	ci right 2.471036e-01	k: 414038	n:1680000
GUCY1A2   1680000 perm   1766 sec   (951 perm/sec)   p_kst 2.464512e-01   p_cons 6.410714e-04   p_joint 4.167857e-03

Joint ci ratio: 4.661559e-02	ci left: 4.069715e-03	ci right 4.264535e-03	k: 7041	n:1690000
Cons ci ratio: 1.189684e-01	ci left: 6.038113e-04	ci right 6.807569e-04	k: 1084	n:1690000
KS ci ratio: 5.273080e-03	ci left: 2.457741e-01	ci right 2.470741e-01	k: 416456	n:1690000
GUCY1A2   1690000 perm   1780 sec   (950 perm/sec)   p_kst 2.464237e-01   p_cons 6.414201e-04   p_joint 4.166272e-03

Joint ci ratio: 4.591117e-02	ci left: 4.171951e-03	ci right 4.368567e-03	k: 7258	n:1700000
Cons ci ratio: 1.186953e-01	ci left: 6.031132e-04	ci right 6.797810e-04	k: 1089	n:1700000
KS ci ratio: 5.257734e-03	ci left: 2.457630e-01	ci right 2.470591e-01	k: 418898	n:1700000
GUCY1A2   1700000 perm   1794 sec   (948 perm/sec)   p_kst 2.464106e-01   p_cons 6.405882e-04   p_joint 4.269412e-03

Joint ci ratio: 4.577578e-02	ci left: 4.172412e-03	ci right 4.368454e-03	k: 7301	n:1710000
Cons ci ratio: 1.183699e-01	ci left: 6.029909e-04	ci right 6.794184e-04	k: 1095	n:1710000
KS ci ratio: 5.241662e-03	ci left: 2.458127e-01	ci right 2.471051e-01	k: 421444	n:1710000
GUCY1A2   1710000 perm   1808 sec   (946 perm/sec)   p_kst 2.464585e-01   p_cons 6.403509e-04   p_joint 4.269591e-03

Joint ci ratio: 4.565095e-02	ci left: 4.171143e-03	ci right 4.366578e-03	k: 7341	n:1720000
Cons ci ratio: 1.180473e-01	ci left: 6.028704e-04	ci right 6.790598e-04	k: 1101	n:1720000
KS ci ratio: 5.226366e-03	ci left: 2.458171e-01	ci right 2.471058e-01	k: 423913	n:1720000
GUCY1A2   1720000 perm   1822 sec   (944 perm/sec)   p_kst 2.464610e-01   p_cons 6.401163e-04   p_joint 4.268023e-03

Joint ci ratio: 4.551476e-02	ci left: 4.172176e-03	ci right 4.367061e-03	k: 7385	n:1730000
Cons ci ratio: 1.178337e-01	ci left: 6.016295e-04	ci right 6.775150e-04	k: 1105	n:1730000
KS ci ratio: 5.211260e-03	ci left: 2.458175e-01	ci right 2.471024e-01	k: 426375	n:1730000
GUCY1A2   1730000 perm   1837 sec   (942 perm/sec)   p_kst 2.464595e-01   p_cons 6.387283e-04   p_joint 4.268786e-03

Joint ci ratio: 4.536751e-02	ci left: 4.175471e-03	ci right 4.369862e-03	k: 7433	n:1740000
Cons ci ratio: 1.173571e-01	ci left: 6.031922e-04	ci right 6.789456e-04	k: 1114	n:1740000
KS ci ratio: 5.196365e-03	ci left: 2.458121e-01	ci right 2.470933e-01	k: 428827	n:1740000
GUCY1A2   1740000 perm   1852 sec   (939 perm/sec)   p_kst 2.464523e-01   p_cons 6.402299e-04   p_joint 4.271839e-03

Joint ci ratio: 4.540795e-02	ci left: 4.144266e-03	ci right 4.337381e-03	k: 7420	n:1750000
Cons ci ratio: 1.169383e-01	ci left: 6.041829e-04	ci right 6.797713e-04	k: 1122	n:1750000
KS ci ratio: 5.181350e-03	ci left: 2.458245e-01	ci right 2.471021e-01	k: 431310	n:1750000
GUCY1A2   1750000 perm   1869 sec   (936 perm/sec)   p_kst 2.464629e-01   p_cons 6.411429e-04   p_joint 4.240000e-03

Joint ci ratio: 4.526783e-02	ci left: 4.146559e-03	ci right 4.339169e-03	k: 7466	n:1760000
Cons ci ratio: 1.164210e-01	ci left: 6.062660e-04	ci right 6.817564e-04	k: 1132	n:1760000
KS ci ratio: 5.167025e-03	ci left: 2.457964e-01	ci right 2.470703e-01	k: 433722	n:1760000
GUCY1A2   1760000 perm   1885 sec   (933 perm/sec)   p_kst 2.464330e-01   p_cons 6.431818e-04   p_joint 4.242045e-03

Joint ci ratio: 4.549532e-02	ci left: 4.081796e-03	ci right 4.272375e-03	k: 7392	n:1770000
Cons ci ratio: 1.162672e-01	ci left: 6.044864e-04	ci right 6.796490e-04	k: 1135	n:1770000
KS ci ratio: 5.152842e-03	ci left: 2.457670e-01	ci right 2.470372e-01	k: 436131	n:1770000
GUCY1A2   1770000 perm   1902 sec   (931 perm/sec)   p_kst 2.464017e-01   p_cons 6.412429e-04   p_joint 4.176271e-03

Joint ci ratio: 4.536970e-02	ci left: 4.081636e-03	ci right 4.271668e-03	k: 7433	n:1780000
Cons ci ratio: 1.161652e-01	ci left: 6.021813e-04	ci right 6.769870e-04	k: 1137	n:1780000
KS ci ratio: 5.138169e-03	ci left: 2.457817e-01	ci right 2.470483e-01	k: 438618	n:1780000
GUCY1A2   1780000 perm   1919 sec   (928 perm/sec)   p_kst 2.464146e-01   p_cons 6.387640e-04   p_joint 4.175843e-03

Joint ci ratio: 4.522082e-02	ci left: 4.085898e-03	ci right 4.275488e-03	k: 7482	n:1790000
Cons ci ratio: 1.157589e-01	ci left: 6.031568e-04	ci right 6.778038e-04	k: 1145	n:1790000
KS ci ratio: 5.123551e-03	ci left: 2.458012e-01	ci right 2.470644e-01	k: 441114	n:1790000
GUCY1A2   1790000 perm   1936 sec   (925 perm/sec)   p_kst 2.464324e-01   p_cons 6.396648e-04   p_joint 4.179888e-03

Joint ci ratio: 4.511250e-02	ci left: 4.082973e-03	ci right 4.271961e-03	k: 7518	n:1800000
Cons ci ratio: 1.155575e-01	ci left: 6.019638e-04	ci right 6.763247e-04	k: 1149	n:1800000
KS ci ratio: 5.109271e-03	ci left: 2.458050e-01	ci right 2.470647e-01	k: 443582	n:1800000
GUCY1A2   1800000 perm   1952 sec   (922 perm/sec)   p_kst 2.464344e-01   p_cons 6.383333e-04   p_joint 4.176667e-03

Joint ci ratio: 4.564646e-02	ci left: 3.965368e-03	ci right 4.151142e-03	k: 7344	n:1810000
Cons ci ratio: 1.153572e-01	ci left: 6.007842e-04	ci right 6.748619e-04	k: 1153	n:1810000
KS ci ratio: 5.095656e-03	ci left: 2.457690e-01	ci right 2.470251e-01	k: 445978	n:1810000
GUCY1A2   1810000 perm   1969 sec   (919 perm/sec)   p_kst 2.463967e-01   p_cons 6.370166e-04   p_joint 4.057459e-03

Joint ci ratio: 4.557227e-02	ci left: 3.956616e-03	ci right 4.141671e-03	k: 7368	n:1820000
Cons ci ratio: 1.149593e-01	ci left: 6.017522e-04	ci right 6.756760e-04	k: 1161	n:1820000
KS ci ratio: 5.082186e-03	ci left: 2.457307e-01	ci right 2.469833e-01	k: 448369	n:1820000
GUCY1A2   1820000 perm   1987 sec   (916 perm/sec)   p_kst 2.463566e-01   p_cons 6.379121e-04   p_joint 4.048352e-03

Joint ci ratio: 4.544293e-02	ci left: 3.957685e-03	ci right 4.142251e-03	k: 7410	n:1830000
Cons ci ratio: 1.148113e-01	ci left: 6.000561e-04	ci right 6.736702e-04	k: 1164	n:1830000
KS ci ratio: 5.068770e-03	ci left: 2.456966e-01	ci right 2.469457e-01	k: 450767	n:1830000
GUCY1A2   1830000 perm   2004 sec   (913 perm/sec)   p_kst 2.463208e-01   p_cons 6.360656e-04   p_joint 4.049180e-03

Joint ci ratio: 4.532080e-02	ci left: 3.957668e-03	ci right 4.141724e-03	k: 7450	n:1840000
Cons ci ratio: 1.144679e-01	ci left: 6.004902e-04	ci right 6.739224e-04	k: 1171	n:1840000
KS ci ratio: 5.055327e-03	ci left: 2.456727e-01	ci right 2.469183e-01	k: 453183	n:1840000
GUCY1A2   1840000 perm   2021 sec   (910 perm/sec)   p_kst 2.462951e-01   p_cons 6.364130e-04   p_joint 4.048913e-03

Joint ci ratio: 4.522390e-02	ci left: 3.953377e-03	ci right 4.136830e-03	k: 7482	n:1850000
Cons ci ratio: 1.142732e-01	ci left: 5.993446e-04	ci right 6.725036e-04	k: 1175	n:1850000
KS ci ratio: 5.042166e-03	ci left: 2.456361e-01	ci right 2.468782e-01	k: 455575	n:1850000
GUCY1A2   1850000 perm   2038 sec   (908 perm/sec)   p_kst 2.462568e-01   p_cons 6.351351e-04   p_joint 4.044324e-03

Joint ci ratio: 4.664446e-02	ci left: 3.694547e-03	ci right 3.871519e-03	k: 7035	n:1860000
Cons ci ratio: 1.140794e-01	ci left: 5.982114e-04	ci right 6.710999e-04	k: 1179	n:1860000
KS ci ratio: 5.029159e-03	ci left: 2.455961e-01	ci right 2.468348e-01	k: 457960	n:1860000
GUCY1A2   1860000 perm   2056 sec   (905 perm/sec)   p_kst 2.462151e-01   p_cons 6.338710e-04   p_joint 3.782258e-03

Joint ci ratio: 4.651571e-02	ci left: 3.695403e-03	ci right 3.871915e-03	k: 7074	n:1870000
Cons ci ratio: 1.136946e-01	ci left: 5.991686e-04	ci right 6.719110e-04	k: 1187	n:1870000
KS ci ratio: 5.016129e-03	ci left: 2.455656e-01	ci right 2.468010e-01	k: 460362	n:1870000
GUCY1A2   1870000 perm   2073 sec   (902 perm/sec)   p_kst 2.461829e-01   p_cons 6.347594e-04   p_joint 3.782888e-03

Joint ci ratio: 4.680929e-02	ci left: 3.629481e-03	ci right 3.803968e-03	k: 6986	n:1880000
Cons ci ratio: 1.132663e-01	ci left: 6.006330e-04	ci right 6.732600e-04	k: 1196	n:1880000
KS ci ratio: 5.002683e-03	ci left: 2.455737e-01	ci right 2.468058e-01	k: 462836	n:1880000
GUCY1A2   1880000 perm   2090 sec   (899 perm/sec)   p_kst 2.461894e-01   p_cons 6.361702e-04   p_joint 3.715957e-03

Joint ci ratio: 4.383599e-02	ci left: 4.120856e-03	ci right 4.306065e-03	k: 7962	n:1890000
Cons ci ratio: 1.128428e-01	ci left: 6.020823e-04	ci right 6.745943e-04	k: 1205	n:1890000
KS ci ratio: 4.989273e-03	ci left: 2.455870e-01	ci right 2.468159e-01	k: 465320	n:1890000
GUCY1A2   1890000 perm   2108 sec   (896 perm/sec)   p_kst 2.462011e-01   p_cons 6.375661e-04   p_joint 4.212698e-03

Joint ci ratio: 4.381162e-02	ci left: 4.103852e-03	ci right 4.288191e-03	k: 7971	n:1900000
Cons ci ratio: 1.126562e-01	ci left: 6.009593e-04	ci right 6.732084e-04	k: 1209	n:1900000
KS ci ratio: 4.976416e-03	ci left: 2.455671e-01	ci right 2.467927e-01	k: 467741	n:1900000
GUCY1A2   1900000 perm   2126 sec   (894 perm/sec)   p_kst 2.461795e-01   p_cons 6.363158e-04   p_joint 4.195263e-03

Joint ci ratio: 4.314331e-02	ci left: 4.210802e-03	ci right 4.396989e-03	k: 8219	n:1910000
Cons ci ratio: 1.123779e-01	ci left: 6.008659e-04	ci right 6.729135e-04	k: 1215	n:1910000
KS ci ratio: 4.963832e-03	ci left: 2.455342e-01	ci right 2.467566e-01	k: 470137	n:1910000
GUCY1A2   1910000 perm   2144 sec   (891 perm/sec)   p_kst 2.461450e-01   p_cons 6.361257e-04   p_joint 4.303141e-03

Joint ci ratio: 4.295787e-02	ci left: 4.225452e-03	ci right 4.411464e-03	k: 8290	n:1920000
Cons ci ratio: 1.119642e-01	ci left: 6.022924e-04	ci right 6.742277e-04	k: 1224	n:1920000
KS ci ratio: 4.950746e-03	ci left: 2.455465e-01	ci right 2.467657e-01	k: 472619	n:1920000
GUCY1A2   1920000 perm   2162 sec   (888 perm/sec)   p_kst 2.461557e-01   p_cons 6.375000e-04   p_joint 4.317708e-03

Joint ci ratio: 4.283917e-02	ci left: 4.227138e-03	ci right 4.412697e-03	k: 8336	n:1930000
Cons ci ratio: 1.117820e-01	ci left: 6.011862e-04	ci right 6.728648e-04	k: 1228	n:1930000
KS ci ratio: 4.937618e-03	ci left: 2.455696e-01	ci right 2.467856e-01	k: 475122	n:1930000
GUCY1A2   1930000 perm   2180 sec   (885 perm/sec)   p_kst 2.461772e-01   p_cons 6.362694e-04   p_joint 4.319171e-03

Joint ci ratio: 4.135391e-02	ci left: 4.514956e-03	ci right 4.706115e-03	k: 8943	n:1940000
Cons ci ratio: 1.115101e-01	ci left: 6.010937e-04	ci right 6.725755e-04	k: 1234	n:1940000
KS ci ratio: 4.924375e-03	ci left: 2.456089e-01	ci right 2.468218e-01	k: 477657	n:1940000
GUCY1A2   1940000 perm   2198 sec   (883 perm/sec)   p_kst 2.462149e-01   p_cons 6.360825e-04   p_joint 4.609794e-03

Joint ci ratio: 4.188220e-02	ci left: 4.378627e-03	ci right 4.566439e-03	k: 8720	n:1950000
Cons ci ratio: 1.110167e-01	ci left: 6.034953e-04	ci right 6.749243e-04	k: 1245	n:1950000
KS ci ratio: 4.911815e-03	ci left: 2.456042e-01	ci right 2.468140e-01	k: 480107	n:1950000
GUCY1A2   1950000 perm   2216 sec   (880 perm/sec)   p_kst 2.462087e-01   p_cons 6.384615e-04   p_joint 4.471795e-03

Joint ci ratio: 4.183212e-02	ci left: 4.366889e-03	ci right 4.553968e-03	k: 8741	n:1960000
Cons ci ratio: 1.107946e-01	ci left: 6.028965e-04	ci right 6.741026e-04	k: 1250	n:1960000
KS ci ratio: 4.899107e-03	ci left: 2.456179e-01	ci right 2.468247e-01	k: 482593	n:1960000
GUCY1A2   1960000 perm   2234 sec   (877 perm/sec)   p_kst 2.462209e-01   p_cons 6.377551e-04   p_joint 4.459694e-03

Joint ci ratio: 4.172725e-02	ci left: 4.366823e-03	ci right 4.553420e-03	k: 8785	n:1970000
Cons ci ratio: 1.104859e-01	ci left: 6.032911e-04	ci right 6.743324e-04	k: 1257	n:1970000
KS ci ratio: 4.886899e-03	ci left: 2.456011e-01	ci right 2.468047e-01	k: 485019	n:1970000
GUCY1A2   1970000 perm   2252 sec   (875 perm/sec)   p_kst 2.462025e-01   p_cons 6.380711e-04   p_joint 4.459391e-03

Joint ci ratio: 4.171818e-02	ci left: 4.346767e-03	ci right 4.532465e-03	k: 8789	n:1980000
Cons ci ratio: 1.103107e-01	ci left: 6.022085e-04	ci right 6.730026e-04	k: 1261	n:1980000
KS ci ratio: 4.874596e-03	ci left: 2.455986e-01	ci right 2.467992e-01	k: 487473	n:1980000
GUCY1A2   1980000 perm   2271 sec   (872 perm/sec)   p_kst 2.461985e-01   p_cons 6.368687e-04   p_joint 4.438889e-03

Joint ci ratio: 4.162126e-02	ci left: 4.345312e-03	ci right 4.530506e-03	k: 8830	n:1990000
Cons ci ratio: 1.101364e-01	ci left: 6.011370e-04	ci right 6.716862e-04	k: 1265	n:1990000
KS ci ratio: 4.861978e-03	ci left: 2.456272e-01	ci right 2.468248e-01	k: 489989	n:1990000
GUCY1A2   1990000 perm   2289 sec   (869 perm/sec)   p_kst 2.462256e-01   p_cons 6.356784e-04   p_joint 4.437186e-03

Joint ci ratio: 4.153677e-02	ci left: 4.341398e-03	ci right 4.526041e-03	k: 8866	n:2000000
Cons ci ratio: 1.100496e-01	ci left: 5.991037e-04	ci right 6.693553e-04	k: 1267	n:2000000
KS ci ratio: 4.849914e-03	ci left: 2.456206e-01	ci right 2.468152e-01	k: 492435	n:2000000
GUCY1A2   2000000 perm   2308 sec   (867 perm/sec)   p_kst 2.462175e-01   p_cons 6.335000e-04   p_joint 4.433000e-03

Joint ci ratio: 4.142710e-02	ci left: 4.342940e-03	ci right 4.527149e-03	k: 8913	n:2010000
Cons ci ratio: 1.097902e-01	ci left: 5.990261e-04	ci right 6.690923e-04	k: 1273	n:2010000
KS ci ratio: 4.837194e-03	ci left: 2.456712e-01	ci right 2.468629e-01	k: 494996	n:2010000
GUCY1A2   2010000 perm   2327 sec   (864 perm/sec)   p_kst 2.462667e-01   p_cons 6.333333e-04   p_joint 4.434328e-03

Joint ci ratio: 4.147665e-02	ci left: 4.311151e-03	ci right 4.494235e-03	k: 8892	n:2020000
Cons ci ratio: 1.095326e-01	ci left: 5.989495e-04	ci right 6.688317e-04	k: 1279	n:2020000
KS ci ratio: 4.825403e-03	ci left: 2.456575e-01	ci right 2.468462e-01	k: 497428	n:2020000
GUCY1A2   2020000 perm   2346 sec   (861 perm/sec)   p_kst 2.462515e-01   p_cons 6.331683e-04   p_joint 4.401980e-03

Joint ci ratio: 4.138140e-02	ci left: 4.309901e-03	ci right 4.492502e-03	k: 8933	n:2030000
Cons ci ratio: 1.092768e-01	ci left: 5.988738e-04	ci right 6.685735e-04	k: 1285	n:2030000
KS ci ratio: 4.813097e-03	ci left: 2.456902e-01	ci right 2.468760e-01	k: 499954	n:2030000
GUCY1A2   2030000 perm   2365 sec   (859 perm/sec)   p_kst 2.462828e-01   p_cons 6.330049e-04   p_joint 4.400493e-03

Joint ci ratio: 3.998528e-02	ci left: 4.595441e-03	ci right 4.783420e-03	k: 9565	n:2040000
Cons ci ratio: 1.089384e-01	ci left: 5.997527e-04	ci right 6.693247e-04	k: 1293	n:2040000
KS ci ratio: 4.800658e-03	ci left: 2.457402e-01	ci right 2.469232e-01	k: 502516	n:2040000
GUCY1A2   2040000 perm   2383 sec   (856 perm/sec)   p_kst 2.463314e-01   p_cons 6.338235e-04   p_joint 4.688725e-03

Joint ci ratio: 3.990410e-02	ci left: 4.591858e-03	ci right 4.779301e-03	k: 9604	n:2050000
Cons ci ratio: 1.087705e-01	ci left: 5.987251e-04	ci right 6.680640e-04	k: 1297	n:2050000
KS ci ratio: 4.788641e-03	ci left: 2.457644e-01	ci right 2.469446e-01	k: 505026	n:2050000
GUCY1A2   2050000 perm   2402 sec   (853 perm/sec)   p_kst 2.463541e-01   p_cons 6.326829e-04   p_joint 4.684878e-03

Joint ci ratio: 4.001983e-02	ci left: 4.543133e-03	ci right 4.729137e-03	k: 9549	n:2060000
Cons ci ratio: 1.086451e-01	ci left: 5.972354e-04	ci right 6.663169e-04	k: 1300	n:2060000
KS ci ratio: 4.776645e-03	ci left: 2.457937e-01	ci right 2.469711e-01	k: 507547	n:2060000
GUCY1A2   2060000 perm   2421 sec   (851 perm/sec)   p_kst 2.463820e-01   p_cons 6.310680e-04   p_joint 4.635437e-03

Joint ci ratio: 4.018548e-02	ci left: 4.483880e-03	ci right 4.668235e-03	k: 9471	n:2070000
Cons ci ratio: 1.084370e-01	ci left: 5.967001e-04	ci right 6.655790e-04	k: 1305	n:2070000
KS ci ratio: 4.765080e-03	ci left: 2.457962e-01	ci right 2.469707e-01	k: 510013	n:2070000
GUCY1A2   2070000 perm   2440 sec   (848 perm/sec)   p_kst 2.463831e-01   p_cons 6.304348e-04   p_joint 4.575362e-03

Joint ci ratio: 4.070507e-02	ci left: 4.348574e-03	ci right 4.529733e-03	k: 9232	n:2080000
Cons ci ratio: 1.081063e-01	ci left: 5.975733e-04	ci right 6.663293e-04	k: 1313	n:2080000
KS ci ratio: 4.753432e-03	ci left: 2.458116e-01	ci right 2.469833e-01	k: 512506	n:2080000
GUCY1A2   2080000 perm   2459 sec   (846 perm/sec)   p_kst 2.463971e-01   p_cons 6.312500e-04   p_joint 4.438462e-03

Joint ci ratio: 4.060183e-02	ci left: 4.350027e-03	ci right 4.530776e-03	k: 9279	n:2090000
Cons ci ratio: 1.079013e-01	ci left: 5.970418e-04	ci right 6.655981e-04	k: 1318	n:2090000
KS ci ratio: 4.742016e-03	ci left: 2.458154e-01	ci right 2.469843e-01	k: 514975	n:2090000
GUCY1A2   2090000 perm   2478 sec   (843 perm/sec)   p_kst 2.463995e-01   p_cons 6.306220e-04   p_joint 4.439713e-03

Joint ci ratio: 4.050156e-02	ci left: 4.350996e-03	ci right 4.531327e-03	k: 9325	n:2100000
Cons ci ratio: 1.074944e-01	ci left: 5.988324e-04	ci right 6.673187e-04	k: 1328	n:2100000
KS ci ratio: 4.730712e-03	ci left: 2.458168e-01	ci right 2.469829e-01	k: 517439	n:2100000
GUCY1A2   2100000 perm   2498 sec   (841 perm/sec)   p_kst 2.463995e-01   p_cons 6.323810e-04   p_joint 4.440476e-03

Joint ci ratio: 4.075738e-02	ci left: 4.275954e-03	ci right 4.454321e-03	k: 9209	n:2110000
Cons ci ratio: 1.073331e-01	ci left: 5.978392e-04	ci right 6.661027e-04	k: 1332	n:2110000
KS ci ratio: 4.719536e-03	ci left: 2.458144e-01	ci right 2.469777e-01	k: 519895	n:2110000
GUCY1A2   2110000 perm   2518 sec   (838 perm/sec)   p_kst 2.463957e-01   p_cons 6.312796e-04   p_joint 4.364455e-03

Joint ci ratio: 4.066699e-02	ci left: 4.274927e-03	ci right 4.452846e-03	k: 9250	n:2120000
Cons ci ratio: 1.070524e-01	ci left: 5.982325e-04	ci right 6.663511e-04	k: 1339	n:2120000
KS ci ratio: 4.708529e-03	ci left: 2.458050e-01	ci right 2.469655e-01	k: 522336	n:2120000
GUCY1A2   2120000 perm   2537 sec   (835 perm/sec)   p_kst 2.463849e-01   p_cons 6.316038e-04   p_joint 4.363208e-03

Joint ci ratio: 4.056404e-02	ci left: 4.276698e-03	ci right 4.454231e-03	k: 9297	n:2130000
Cons ci ratio: 1.066946e-01	ci left: 5.995364e-04	ci right 6.675609e-04	k: 1348	n:2130000
KS ci ratio: 4.697101e-03	ci left: 2.458350e-01	ci right 2.469929e-01	k: 524861	n:2130000
GUCY1A2   2130000 perm   2557 sec   (833 perm/sec)   p_kst 2.464136e-01   p_cons 6.328638e-04   p_joint 4.364789e-03

Joint ci ratio: 4.070761e-02	ci left: 4.226646e-03	ci right 4.402736e-03	k: 9232	n:2140000
Cons ci ratio: 1.064581e-01	ci left: 5.994638e-04	ci right 6.673199e-04	k: 1354	n:2140000
KS ci ratio: 4.686126e-03	ci left: 2.458354e-01	ci right 2.469905e-01	k: 527323	n:2140000
GUCY1A2   2140000 perm   2577 sec   (830 perm/sec)   p_kst 2.464126e-01   p_cons 6.327103e-04   p_joint 4.314019e-03

Joint ci ratio: 4.060216e-02	ci left: 4.229086e-03	ci right 4.404811e-03	k: 9280	n:2150000
Cons ci ratio: 1.062232e-01	ci left: 5.993921e-04	ci right 6.670810e-04	k: 1360	n:2150000
KS ci ratio: 4.674900e-03	ci left: 2.458618e-01	ci right 2.470143e-01	k: 529841	n:2150000
GUCY1A2   2150000 perm   2596 sec   (828 perm/sec)   p_kst 2.464377e-01   p_cons 6.325581e-04   p_joint 4.316279e-03

Joint ci ratio: 4.049099e-02	ci left: 4.232879e-03	ci right 4.408269e-03	k: 9331	n:2160000
Cons ci ratio: 1.060675e-01	ci left: 5.984198e-04	ci right 6.658937e-04	k: 1364	n:2160000
KS ci ratio: 4.663835e-03	ci left: 2.458814e-01	ci right 2.470313e-01	k: 532345	n:2160000
GUCY1A2   2160000 perm   2614 sec   (826 perm/sec)   p_kst 2.464560e-01   p_cons 6.314815e-04   p_joint 4.319907e-03

Joint ci ratio: 4.039370e-02	ci left: 4.233901e-03	ci right 4.408901e-03	k: 9376	n:2170000
Cons ci ratio: 1.059125e-01	ci left: 5.974565e-04	ci right 6.647172e-04	k: 1368	n:2170000
KS ci ratio: 4.653138e-03	ci left: 2.458779e-01	ci right 2.470251e-01	k: 534799	n:2170000
GUCY1A2   2170000 perm   2631 sec   (825 perm/sec)   p_kst 2.464512e-01   p_cons 6.304147e-04   p_joint 4.320737e-03

Joint ci ratio: 4.041575e-02	ci left: 4.209937e-03	ci right 4.384044e-03	k: 9366	n:2180000
Cons ci ratio: 1.057582e-01	ci left: 5.965022e-04	ci right 6.635515e-04	k: 1372	n:2180000
KS ci ratio: 4.642576e-03	ci left: 2.458693e-01	ci right 2.470139e-01	k: 537242	n:2180000
GUCY1A2   2180000 perm   2649 sec   (823 perm/sec)   p_kst 2.464413e-01   p_cons 6.293578e-04   p_joint 4.296330e-03

Joint ci ratio: 4.031040e-02	ci left: 4.212862e-03	ci right 4.386626e-03	k: 9415	n:2190000
Cons ci ratio: 1.054896e-01	ci left: 5.968903e-04	ci right 6.638023e-04	k: 1379	n:2190000
KS ci ratio: 4.632161e-03	ci left: 2.458549e-01	ci right 2.469969e-01	k: 539672	n:2190000
GUCY1A2   2190000 perm   2666 sec   (821 perm/sec)   p_kst 2.464256e-01   p_cons 6.296804e-04   p_joint 4.299087e-03

Joint ci ratio: 3.998164e-02	ci left: 4.263463e-03	ci right 4.437846e-03	k: 9570	n:2200000
Cons ci ratio: 1.052990e-01	ci left: 5.963900e-04	ci right 6.631177e-04	k: 1384	n:2200000
KS ci ratio: 4.621696e-03	ci left: 2.458502e-01	ci right 2.469895e-01	k: 542123	n:2200000
GUCY1A2   2200000 perm   2684 sec   (820 perm/sec)   p_kst 2.464195e-01   p_cons 6.290909e-04   p_joint 4.350000e-03

Joint ci ratio: 3.986507e-02	ci left: 4.269258e-03	ci right 4.443357e-03	k: 9626	n:2210000
Cons ci ratio: 1.050339e-01	ci left: 5.967755e-04	ci right 6.633678e-04	k: 1391	n:2210000
KS ci ratio: 4.611274e-03	ci left: 2.458478e-01	ci right 2.469845e-01	k: 544579	n:2210000
GUCY1A2   2210000 perm   2702 sec   (818 perm/sec)   p_kst 2.464158e-01   p_cons 6.294118e-04   p_joint 4.355656e-03

Joint ci ratio: 3.836529e-02	ci left: 4.590821e-03	ci right 4.770836e-03	k: 10390	n:2220000
Cons ci ratio: 1.047333e-01	ci left: 5.975964e-04	ci right 6.640778e-04	k: 1399	n:2220000
KS ci ratio: 4.600945e-03	ci left: 2.458436e-01	ci right 2.469778e-01	k: 547031	n:2220000
GUCY1A2   2220000 perm   2722 sec   (816 perm/sec)   p_kst 2.464104e-01   p_cons 6.301802e-04   p_joint 4.680180e-03

Joint ci ratio: 3.841029e-02	ci left: 4.559574e-03	ci right 4.738578e-03	k: 10366	n:2230000
Cons ci ratio: 1.044353e-01	ci left: 5.984103e-04	ci right 6.647811e-04	k: 1407	n:2230000
KS ci ratio: 4.591133e-03	ci left: 2.458032e-01	ci right 2.469347e-01	k: 549402	n:2230000
GUCY1A2   2230000 perm   2743 sec   (813 perm/sec)   p_kst 2.463686e-01   p_cons 6.309417e-04   p_joint 4.648430e-03

Joint ci ratio: 3.860383e-02	ci left: 4.493676e-03	ci right 4.671001e-03	k: 10263	n:2240000
Cons ci ratio: 1.042504e-01	ci left: 5.979127e-04	ci right 6.641037e-04	k: 1412	n:2240000
KS ci ratio: 4.580690e-03	ci left: 2.458193e-01	ci right 2.469483e-01	k: 551899	n:2240000
GUCY1A2   2240000 perm   2763 sec   (811 perm/sec)   p_kst 2.463835e-01   p_cons 6.303571e-04   p_joint 4.581696e-03

Joint ci ratio: 3.848575e-02	ci left: 4.501435e-03	ci right 4.678511e-03	k: 10326	n:2250000
Cons ci ratio: 1.039565e-01	ci left: 5.987183e-04	ci right 6.648002e-04	k: 1420	n:2250000
KS ci ratio: 4.570460e-03	ci left: 2.458237e-01	ci right 2.469503e-01	k: 554370	n:2250000
GUCY1A2   2250000 perm   2783 sec   (809 perm/sec)   p_kst 2.463867e-01   p_cons 6.311111e-04   p_joint 4.589333e-03

Joint ci ratio: 3.840962e-02	ci left: 4.499484e-03	ci right 4.676126e-03	k: 10367	n:2260000
Cons ci ratio: 1.038106e-01	ci left: 5.977930e-04	ci right 6.636745e-04	k: 1424	n:2260000
KS ci ratio: 4.560032e-03	ci left: 2.458498e-01	ci right 2.469739e-01	k: 556890	n:2260000
GUCY1A2   2260000 perm   2802 sec   (807 perm/sec)   p_kst 2.464115e-01   p_cons 6.300885e-04   p_joint 4.587168e-03

Joint ci ratio: 3.830991e-02	ci left: 4.503223e-03	ci right 4.679542e-03	k: 10421	n:2270000
Cons ci ratio: 1.035565e-01	ci left: 5.981633e-04	ci right 6.639145e-04	k: 1431	n:2270000
KS ci ratio: 4.549892e-03	ci left: 2.458580e-01	ci right 2.469796e-01	k: 559370	n:2270000
GUCY1A2   2270000 perm   2820 sec   (805 perm/sec)   p_kst 2.464185e-01   p_cons 6.303965e-04   p_joint 4.590749e-03

Joint ci ratio: 3.822015e-02	ci left: 4.504758e-03	ci right 4.680715e-03	k: 10470	n:2280000
Cons ci ratio: 1.033403e-01	ci left: 5.981032e-04	ci right 6.637022e-04	k: 1437	n:2280000
KS ci ratio: 4.539920e-03	ci left: 2.458579e-01	ci right 2.469770e-01	k: 561831	n:2280000
GUCY1A2   2280000 perm   2838 sec   (803 perm/sec)   p_kst 2.464171e-01   p_cons 6.302632e-04   p_joint 4.592105e-03

Joint ci ratio: 3.841264e-02	ci left: 4.440104e-03	ci right 4.614428e-03	k: 10366	n:2290000
Cons ci ratio: 1.030540e-01	ci left: 5.988947e-04	ci right 6.643875e-04	k: 1445	n:2290000
KS ci ratio: 4.530253e-03	ci left: 2.458381e-01	ci right 2.469547e-01	k: 564247	n:2290000
GUCY1A2   2290000 perm   2856 sec   (802 perm/sec)   p_kst 2.463961e-01   p_cons 6.310044e-04   p_joint 4.526638e-03

Joint ci ratio: 3.833694e-02	ci left: 4.438454e-03	ci right 4.612363e-03	k: 10407	n:2300000
Cons ci ratio: 1.029473e-01	ci left: 5.975616e-04	ci right 6.628368e-04	k: 1448	n:2300000
KS ci ratio: 4.520706e-03	ci left: 2.458137e-01	ci right 2.469278e-01	k: 566652	n:2300000
GUCY1A2   2300000 perm   2875 sec   (800 perm/sec)   p_kst 2.463704e-01   p_cons 6.295652e-04   p_joint 4.524783e-03

Joint ci ratio: 3.825433e-02	ci left: 4.438534e-03	ci right 4.612063e-03	k: 10452	n:2310000
Cons ci ratio: 1.027702e-01	ci left: 5.970835e-04	ci right 6.621876e-04	k: 1453	n:2310000
KS ci ratio: 4.511103e-03	ci left: 2.457990e-01	ci right 2.469107e-01	k: 569079	n:2310000
GUCY1A2   2310000 perm   2893 sec   (798 perm/sec)   p_kst 2.463545e-01   p_cons 6.290043e-04   p_joint 4.524675e-03

Joint ci ratio: 3.817409e-02	ci left: 4.438186e-03	ci right 4.611330e-03	k: 10496	n:2320000
Cons ci ratio: 1.026291e-01	ci left: 5.961897e-04	ci right 6.611017e-04	k: 1457	n:2320000
KS ci ratio: 4.501562e-03	ci left: 2.457844e-01	ci right 2.468938e-01	k: 571506	n:2320000
GUCY1A2   2320000 perm   2911 sec   (797 perm/sec)   p_kst 2.463388e-01   p_cons 6.280172e-04   p_joint 4.524138e-03

Joint ci ratio: 3.832327e-02	ci left: 4.384705e-03	ci right 4.556445e-03	k: 10415	n:2330000
Cons ci ratio: 1.022441e-01	ci left: 5.982311e-04	ci right 6.631063e-04	k: 1468	n:2330000
KS ci ratio: 4.491779e-03	ci left: 2.457949e-01	ci right 2.469019e-01	k: 573991	n:2330000
GUCY1A2   2330000 perm   2930 sec   (795 perm/sec)   p_kst 2.463481e-01   p_cons 6.300429e-04   p_joint 4.469957e-03

Joint ci ratio: 3.824626e-02	ci left: 4.383743e-03	ci right 4.555093e-03	k: 10457	n:2340000
Cons ci ratio: 1.020359e-01	ci left: 5.981732e-04	ci right 6.629021e-04	k: 1474	n:2340000
KS ci ratio: 4.482153e-03	ci left: 2.457976e-01	ci right 2.469022e-01	k: 576458	n:2340000
GUCY1A2   2340000 perm   2949 sec   (793 perm/sec)   p_kst 2.463496e-01   p_cons 6.299145e-04   p_joint 4.468803e-03

Joint ci ratio: 3.814965e-02	ci left: 4.387427e-03	ci right 4.558478e-03	k: 10510	n:2350000
Cons ci ratio: 1.018634e-01	ci left: 5.977011e-04	ci right 6.622631e-04	k: 1479	n:2350000
KS ci ratio: 4.472742e-03	ci left: 2.457875e-01	ci right 2.468897e-01	k: 578895	n:2350000
GUCY1A2   2350000 perm   2968 sec   (792 perm/sec)   p_kst 2.463383e-01   p_cons 6.293617e-04   p_joint 4.472340e-03

Joint ci ratio: 3.768994e-02	ci left: 4.476706e-03	ci right 4.649089e-03	k: 10767	n:2360000
Cons ci ratio: 1.013170e-01	ci left: 6.017760e-04	ci right 6.664087e-04	k: 1495	n:2360000
KS ci ratio: 4.462871e-03	ci left: 2.458207e-01	ci right 2.469206e-01	k: 581434	n:2360000
GUCY1A2   2360000 perm   2989 sec   (790 perm/sec)   p_kst 2.463703e-01   p_cons 6.334746e-04   p_joint 4.562288e-03

Joint ci ratio: 3.759572e-02	ci left: 4.480387e-03	ci right 4.652472e-03	k: 10821	n:2370000
Cons ci ratio: 1.010136e-01	ci left: 6.029382e-04	ci right 6.674904e-04	k: 1504	n:2370000
KS ci ratio: 4.453257e-03	ci left: 2.458376e-01	ci right 2.469352e-01	k: 583935	n:2370000
GUCY1A2   2370000 perm   3010 sec   (787 perm/sec)   p_kst 2.463861e-01   p_cons 6.345992e-04   p_joint 4.565823e-03

Joint ci ratio: 3.753689e-02	ci left: 4.475714e-03	ci right 4.647344e-03	k: 10855	n:2380000
Cons ci ratio: 1.007128e-01	ci left: 6.040910e-04	ci right 6.685626e-04	k: 1513	n:2380000
KS ci ratio: 4.443971e-03	ci left: 2.458321e-01	ci right 2.469274e-01	k: 586383	n:2380000
GUCY1A2   2380000 perm   3031 sec   (785 perm/sec)   p_kst 2.463794e-01   p_cons 6.357143e-04   p_joint 4.560924e-03

Joint ci ratio: 3.745761e-02	ci left: 4.476053e-03	ci right 4.647326e-03	k: 10901	n:2390000
Cons ci ratio: 1.005470e-01	ci left: 6.036028e-04	ci right 6.679100e-04	k: 1518	n:2390000
KS ci ratio: 4.434678e-03	ci left: 2.458320e-01	ci right 2.469251e-01	k: 588844	n:2390000
GUCY1A2   2390000 perm   3053 sec   (783 perm/sec)   p_kst 2.463782e-01   p_cons 6.351464e-04   p_joint 4.561088e-03

Joint ci ratio: 3.753066e-02	ci left: 4.440066e-03	ci right 4.610300e-03	k: 10859	n:2400000
Cons ci ratio: 1.001848e-01	ci left: 6.055562e-04	ci right 6.698253e-04	k: 1529	n:2400000
KS ci ratio: 4.425205e-03	ci left: 2.458520e-01	ci right 2.469428e-01	k: 591353	n:2400000
GUCY1A2   2400000 perm   3075 sec   (781 perm/sec)   p_kst 2.463971e-01   p_cons 6.370833e-04   p_joint 4.524583e-03

Joint ci ratio: 3.746350e-02	ci left: 4.437673e-03	ci right 4.607505e-03	k: 10898	n:2410000
Cons ci ratio: 1.000541e-01	ci left: 6.046617e-04	ci right 6.687473e-04	k: 1533	n:2410000
KS ci ratio: 4.415813e-03	ci left: 2.458702e-01	ci right 2.469587e-01	k: 593858	n:2410000
GUCY1A2   2410000 perm   3096 sec   (778 perm/sec)   p_kst 2.464141e-01   p_cons 6.360996e-04   p_joint 4.521992e-03

Joint ci ratio: 3.740014e-02	ci left: 4.434481e-03	ci right 4.603898e-03	k: 10935	n:2420000
Cons ci ratio: 9.995651e-02	ci left: 6.033717e-04	ci right 6.672546e-04	k: 1536	n:2420000
KS ci ratio: 4.407445e-03	ci left: 2.458068e-01	ci right 2.468930e-01	k: 596166	n:2420000
GUCY1A2   2420000 perm   3118 sec   (776 perm/sec)   p_kst 2.463496e-01   p_cons 6.347107e-04   p_joint 4.518595e-03

Outputting figure to mutsig2_images.part000000000076/GUCY1A2.7_2231_2420000_0.24635_0.00063471_0.0045186.png
                gene_name: GUCY1A2
               theta_stop: 0.100 
                    nperm: 2420000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.00063 
      ci_cons_bounds_left: 0.00060 
     ci_cons_bounds_right: 0.00067 
                  p_joint: 0.0045 
     ci_joint_bounds_left: 0.0044 
    ci_joint_bounds_right: 0.0046 

Current progress: 10 percent done.
GUCY2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
Cons ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
KS ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
GUCY2C   10000 perm   2 sec   (4531 perm/sec)   p_kst 4.170000e-02   p_cons 8.280000e-02   p_joint 4.840000e-02

Joint ci ratio: 1.350876e-01	ci left: 3.766484e-02	ci right 4.316980e-02	k: 807	n:20000
Cons ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
KS ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
GUCY2C   20000 perm   5 sec   (4164 perm/sec)   p_kst 4.110000e-02   p_cons 6.820000e-02   p_joint 4.035000e-02

Joint ci ratio: 1.295830e-01	ci left: 2.767889e-02	ci right 3.154626e-02	k: 887	n:30000
Cons ci ratio: 8.249198e-02	ci left: 6.710517e-02	ci right 7.291177e-02	k: 2099	n:30000
KS ci ratio: 1.118471e-01	ci left: 3.712929e-02	ci right 4.156049e-02	k: 1179	n:30000
GUCY2C   30000 perm   7 sec   (4013 perm/sec)   p_kst 3.930000e-02   p_cons 6.996667e-02   p_joint 2.956667e-02

Joint ci ratio: 1.048317e-01	ci left: 3.200171e-02	ci right 3.556639e-02	k: 1350	n:40000
Cons ci ratio: 7.146786e-02	ci left: 6.744463e-02	ci right 7.246802e-02	k: 2797	n:40000
KS ci ratio: 9.716320e-02	ci left: 3.719708e-02	ci right 4.102020e-02	k: 1563	n:40000
GUCY2C   40000 perm   10 sec   (3890 perm/sec)   p_kst 3.907500e-02   p_cons 6.992500e-02   p_joint 3.375000e-02

Joint ci ratio: 6.508597e-02	ci left: 6.543426e-02	ci right 6.985609e-02	k: 3381	n:50000
Cons ci ratio: 6.086645e-02	ci left: 7.426375e-02	ci right 7.894555e-02	k: 3829	n:50000
KS ci ratio: 8.779743e-02	ci left: 3.665421e-02	ci right 4.003966e-02	k: 1916	n:50000
GUCY2C   50000 perm   13 sec   (3796 perm/sec)   p_kst 3.832000e-02   p_cons 7.658000e-02   p_joint 6.762000e-02

Outputting figure to mutsig2_images.part000000000076/GUCY2C.7_3330_50000_0.03832_0.07658_0.06762.png
                gene_name: GUCY2C
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 12 percent done.
GUCY1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
Cons ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
KS ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
GUCY1A3   10000 perm   2 sec   (5194 perm/sec)   p_kst 5.766000e-01   p_cons 2.757000e-01   p_joint 5.432000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1A3.6_2124_10000_0.5766_0.2757_0.5432.png
                gene_name: GUCY1A3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
GTPBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
Cons ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
GTPBP10   10000 perm   2 sec   (5536 perm/sec)   p_kst 3.408000e-01   p_cons 7.218000e-01   p_joint 4.543000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP10.5_1204_10000_0.3408_0.7218_0.4543.png
                gene_name: GTPBP10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 16 percent done.
GTPBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
GTPBP5   10000 perm   2 sec   (5776 perm/sec)   p_kst 7.798000e-01   p_cons 4.355000e-01   p_joint 8.661000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP5.5_1245_10000_0.7798_0.4355_0.8661.png
                gene_name: GTPBP5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 18 percent done.
GUCY1B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
GUCY1B3   10000 perm   2 sec   (5505 perm/sec)   p_kst 1.400000e-01   p_cons 1.169000e-01   p_joint 1.187000e-01

Joint ci ratio: 7.057092e-02	ci left: 1.289134e-01	ci right 1.383934e-01	k: 2672	n:20000
Cons ci ratio: 7.556267e-02	ci left: 1.141006e-01	ci right 1.231106e-01	k: 2371	n:20000
KS ci ratio: 6.936269e-02	ci left: 1.329030e-01	ci right 1.425026e-01	k: 2753	n:20000
GUCY1B3   20000 perm   4 sec   (5033 perm/sec)   p_kst 1.376500e-01   p_cons 1.185500e-01   p_joint 1.336000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1B3.5_1916_20000_0.13765_0.11855_0.1336.png
                gene_name: GUCY1B3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 20 percent done.
GUF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
KS ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
GUF1   10000 perm   2 sec   (5099 perm/sec)   p_kst 3.133000e-01   p_cons 6.380000e-02   p_joint 1.661000e-01

Joint ci ratio: 6.522948e-02	ci left: 1.479380e-01	ci right 1.579631e-01	k: 3058	n:20000
Cons ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
KS ci ratio: 4.141655e-02	ci left: 3.028974e-01	ci right 3.157581e-01	k: 6186	n:20000
GUF1   20000 perm   4 sec   (4643 perm/sec)   p_kst 3.093000e-01   p_cons 6.420000e-02   p_joint 1.529000e-01

Joint ci ratio: 4.002890e-02	ci left: 2.373606e-01	ci right 2.470894e-01	k: 7266	n:30000
Cons ci ratio: 8.628624e-02	ci left: 6.158266e-02	ci right 6.716874e-02	k: 1930	n:30000
KS ci ratio: 3.401670e-02	ci left: 3.015838e-01	ci right 3.120537e-01	k: 9204	n:30000
GUF1   30000 perm   7 sec   (4472 perm/sec)   p_kst 3.068000e-01   p_cons 6.433333e-02   p_joint 2.422000e-01

Outputting figure to mutsig2_images.part000000000076/GUF1.5_2078_30000_0.3068_0.064333_0.2422.png
                gene_name: GUF1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 22 percent done.
H3F3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
Cons ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
H3F3C   10000 perm   2 sec   (6655 perm/sec)   p_kst 2.584000e-01   p_cons 8.037000e-01   p_joint 4.685000e-01

Outputting figure to mutsig2_images.part000000000076/H3F3C.5_412_10000_0.2584_0.8037_0.4685.png
                gene_name: H3F3C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 24 percent done.
GTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
GTPBP1   10000 perm   2 sec   (5844 perm/sec)   p_kst 1.713000e-01   p_cons 7.640000e-02   p_joint 9.820000e-02

Joint ci ratio: 7.001264e-02	ci left: 1.307356e-01	ci right 1.402706e-01	k: 2709	n:20000
Cons ci ratio: 9.589858e-02	ci left: 7.339088e-02	ci right 8.083263e-02	k: 1541	n:20000
KS ci ratio: 6.139857e-02	ci left: 1.640766e-01	ci right 1.745197e-01	k: 3385	n:20000
GTPBP1   20000 perm   4 sec   (5292 perm/sec)   p_kst 1.692500e-01   p_cons 7.705000e-02   p_joint 1.354500e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP1.4_2058_20000_0.16925_0.07705_0.13545.png
                gene_name: GTPBP1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
GTPBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 1.070219e-02	ci left: 9.255458e-01	ci right 9.356016e-01	k: 9307	n:10000
GTPBP3   10000 perm   2 sec   (5704 perm/sec)   p_kst 9.307000e-01   p_cons 7.454000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GTPBP3.4_1607_10000_0.9307_0.7454_1.png
                gene_name: GTPBP3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
GUCA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
GUCA1C   10000 perm   2 sec   (6138 perm/sec)   p_kst 1.020000e-02   p_cons 2.445000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.303669e-01	ci left: 4.042395e-02	ci right 4.610980e-02	k: 864	n:20000
Cons ci ratio: 4.879027e-02	ci left: 2.380106e-01	ci right 2.499639e-01	k: 4879	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
GUCA1C   20000 perm   4 sec   (5544 perm/sec)   p_kst 9.700000e-03   p_cons 2.439500e-01   p_joint 4.320000e-02

Joint ci ratio: 1.356026e-01	ci left: 2.525960e-02	ci right 2.896608e-02	k: 812	n:30000
Cons ci ratio: 3.974385e-02	ci left: 2.399759e-01	ci right 2.497403e-01	k: 7345	n:30000
KS ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
GUCA1C   30000 perm   6 sec   (5294 perm/sec)   p_kst 9.500000e-03   p_cons 2.448333e-01   p_joint 2.706667e-02

Joint ci ratio: 1.304528e-01	ci left: 2.063321e-02	ci right 2.353675e-02	k: 882	n:40000
Cons ci ratio: 3.426097e-02	ci left: 2.423323e-01	ci right 2.508046e-01	k: 9862	n:40000
KS ci ratio: 2.025678e-01	ci left: 8.335114e-03	ci right 1.023715e-02	k: 370	n:40000
GUCA1C   40000 perm   8 sec   (5118 perm/sec)   p_kst 9.250000e-03   p_cons 2.465500e-01   p_joint 2.205000e-02

Joint ci ratio: 1.129562e-01	ci left: 2.218992e-02	ci right 2.486580e-02	k: 1175	n:50000
Cons ci ratio: 3.059087e-02	ci left: 2.434236e-01	ci right 2.510058e-01	k: 12360	n:50000
KS ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
GUCA1C   50000 perm   10 sec   (4980 perm/sec)   p_kst 9.160000e-03   p_cons 2.472000e-01   p_joint 2.350000e-02

Joint ci ratio: 1.122613e-01	ci left: 1.879747e-02	ci right 2.104931e-02	k: 1194	n:60000
Cons ci ratio: 2.796460e-02	ci left: 2.432380e-01	ci right 2.501532e-01	k: 14801	n:60000
KS ci ratio: 1.638435e-01	ci left: 8.675324e-03	ci right 1.023934e-02	k: 566	n:60000
GUCA1C   60000 perm   12 sec   (4852 perm/sec)   p_kst 9.433333e-03   p_cons 2.466833e-01   p_joint 1.990000e-02

Joint ci ratio: 1.165083e-01	ci left: 1.498631e-02	ci right 1.685413e-02	k: 1113	n:70000
Cons ci ratio: 2.588721e-02	ci left: 2.435383e-01	ci right 2.499398e-01	k: 17271	n:70000
KS ci ratio: 1.528013e-01	ci left: 8.602186e-03	ci right 1.003893e-02	k: 651	n:70000
GUCA1C   70000 perm   15 sec   (4744 perm/sec)   p_kst 9.300000e-03   p_cons 2.467286e-01   p_joint 1.590000e-02

Joint ci ratio: 1.020423e-01	ci left: 1.718746e-02	ci right 1.904772e-02	k: 1448	n:80000
Cons ci ratio: 2.427522e-02	ci left: 2.428319e-01	ci right 2.488116e-01	k: 19665	n:80000
KS ci ratio: 1.450240e-01	ci left: 8.393326e-03	ci right 9.717645e-03	k: 723	n:80000
GUCA1C   80000 perm   17 sec   (4646 perm/sec)   p_kst 9.037500e-03   p_cons 2.458125e-01   p_joint 1.810000e-02

Joint ci ratio: 9.405854e-02	ci left: 1.804204e-02	ci right 1.983360e-02	k: 1703	n:90000
Cons ci ratio: 2.290629e-02	ci left: 2.426909e-01	ci right 2.483255e-01	k: 22095	n:90000
KS ci ratio: 1.351074e-01	ci left: 8.640239e-03	ci right 9.902805e-03	k: 833	n:90000
GUCA1C   90000 perm   20 sec   (4551 perm/sec)   p_kst 9.255556e-03   p_cons 2.455000e-01   p_joint 1.892222e-02

Joint ci ratio: 8.907210e-02	ci left: 1.815302e-02	ci right 1.985504e-02	k: 1899	n:100000
Cons ci ratio: 2.174556e-02	ci left: 2.425858e-01	ci right 2.479289e-01	k: 24525	n:100000
KS ci ratio: 1.304428e-01	ci left: 8.365877e-03	ci right 9.542870e-03	k: 894	n:100000
GUCA1C   100000 perm   22 sec   (4459 perm/sec)   p_kst 8.940000e-03   p_cons 2.452500e-01   p_joint 1.899000e-02

Joint ci ratio: 8.333547e-02	ci left: 1.889581e-02	ci right 2.054783e-02	k: 2168	n:110000
Cons ci ratio: 2.074000e-02	ci left: 2.425965e-01	ci right 2.476897e-01	k: 26965	n:110000
KS ci ratio: 1.233960e-01	ci left: 8.529641e-03	ci right 9.660106e-03	k: 999	n:110000
GUCA1C   110000 perm   25 sec   (4373 perm/sec)   p_kst 9.081818e-03   p_cons 2.451364e-01   p_joint 1.970909e-02

Joint ci ratio: 8.149376e-02	ci left: 1.814519e-02	ci right 1.969485e-02	k: 2269	n:120000
Cons ci ratio: 1.987111e-02	ci left: 2.424440e-01	ci right 2.473183e-01	k: 29385	n:120000
KS ci ratio: 1.184669e-01	ci left: 8.505741e-03	ci right 9.584853e-03	k: 1084	n:120000
GUCA1C   120000 perm   28 sec   (4293 perm/sec)   p_kst 9.033333e-03   p_cons 2.448750e-01   p_joint 1.890833e-02

Joint ci ratio: 8.074344e-02	ci left: 1.708816e-02	ci right 1.853346e-02	k: 2314	n:130000
Cons ci ratio: 1.910023e-02	ci left: 2.423726e-01	ci right 2.470542e-01	k: 31812	n:130000
KS ci ratio: 1.142328e-01	ci left: 8.463856e-03	ci right 9.496686e-03	k: 1166	n:130000
GUCA1C   130000 perm   31 sec   (4215 perm/sec)   p_kst 8.969231e-03   p_cons 2.447077e-01   p_joint 1.780000e-02

Joint ci ratio: 8.244053e-02	ci left: 1.523723e-02	ci right 1.655436e-02	k: 2224	n:140000
Cons ci ratio: 1.839448e-02	ci left: 2.426776e-01	ci right 2.471901e-01	k: 34290	n:140000
KS ci ratio: 1.103779e-01	ci left: 8.435493e-03	ci right 9.427863e-03	k: 1249	n:140000
GUCA1C   140000 perm   34 sec   (4137 perm/sec)   p_kst 8.921429e-03   p_cons 2.449286e-01   p_joint 1.588571e-02

Joint ci ratio: 8.895709e-02	ci left: 1.221115e-02	ci right 1.335446e-02	k: 1916	n:150000
Cons ci ratio: 1.776382e-02	ci left: 2.428982e-01	ci right 2.472583e-01	k: 36761	n:150000
KS ci ratio: 1.066869e-01	ci left: 8.443871e-03	ci right 9.401922e-03	k: 1337	n:150000
GUCA1C   150000 perm   37 sec   (4064 perm/sec)   p_kst 8.913333e-03   p_cons 2.450733e-01   p_joint 1.277333e-02

Joint ci ratio: 8.141757e-02	ci left: 1.369945e-02	ci right 1.486825e-02	k: 2284	n:160000
Cons ci ratio: 1.719330e-02	ci left: 2.431060e-01	ci right 2.473282e-01	k: 39234	n:160000
KS ci ratio: 1.031606e-01	ci left: 8.482135e-03	ci right 9.410790e-03	k: 1430	n:160000
GUCA1C   160000 perm   40 sec   (3994 perm/sec)   p_kst 8.937500e-03   p_cons 2.452125e-01   p_joint 1.427500e-02

Joint ci ratio: 6.561256e-02	ci left: 1.988952e-02	ci right 2.124455e-02	k: 3495	n:170000
Cons ci ratio: 1.666703e-02	ci left: 2.434555e-01	ci right 2.475531e-01	k: 41735	n:170000
KS ci ratio: 1.000287e-01	ci left: 8.504885e-03	ci right 9.406099e-03	k: 1521	n:170000
GUCA1C   170000 perm   43 sec   (3921 perm/sec)   p_kst 8.947059e-03   p_cons 2.455000e-01   p_joint 2.055882e-02

Joint ci ratio: 6.712454e-02	ci left: 1.796990e-02	ci right 1.922345e-02	k: 3346	n:180000
Cons ci ratio: 1.619964e-02	ci left: 2.434632e-01	ci right 2.474450e-01	k: 44181	n:180000
KS ci ratio: 9.759398e-02	ci left: 8.449585e-03	ci right 9.321898e-03	k: 1598	n:180000
GUCA1C   180000 perm   47 sec   (3860 perm/sec)   p_kst 8.877778e-03   p_cons 2.454500e-01   p_joint 1.858889e-02

Outputting figure to mutsig2_images.part000000000076/GUCA1C.4_646_180000_0.0088778_0.24545_0.018589.png
                gene_name: GUCA1C
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 29 percent done.
GUSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
GUSB   10000 perm   2 sec   (5407 perm/sec)   p_kst 3.160000e-02   p_cons 3.399000e-01   p_joint 3.910000e-02

Joint ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
Cons ci ratio: 3.994670e-02	ci left: 3.184599e-01	ci right 3.314911e-01	k: 6499	n:20000
KS ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
GUSB   20000 perm   4 sec   (4938 perm/sec)   p_kst 2.990000e-02   p_cons 3.249500e-01   p_joint 6.720000e-02

Joint ci ratio: 7.463866e-02	ci left: 8.104867e-02	ci right 8.736546e-02	k: 2525	n:30000
Cons ci ratio: 3.283064e-02	ci left: 3.168131e-01	ci right 3.274214e-01	k: 9663	n:30000
KS ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
GUSB   30000 perm   6 sec   (4716 perm/sec)   p_kst 2.996667e-02   p_cons 3.221000e-01   p_joint 8.416667e-02

Joint ci ratio: 6.916929e-02	ci left: 7.174838e-02	ci right 7.691362e-02	k: 2972	n:40000
Cons ci ratio: 2.856344e-02	ci left: 3.155289e-01	ci right 3.246972e-01	k: 12804	n:40000
KS ci ratio: 1.139704e-01	ci left: 2.708559e-02	ci right 3.038330e-02	k: 1148	n:40000
GUSB   40000 perm   9 sec   (4580 perm/sec)   p_kst 2.870000e-02   p_cons 3.201000e-01   p_joint 7.430000e-02

Joint ci ratio: 7.083112e-02	ci left: 5.567189e-02	ci right 5.977965e-02	k: 2885	n:50000
Cons ci ratio: 2.547094e-02	ci left: 3.173269e-01	ci right 3.255338e-01	k: 16071	n:50000
KS ci ratio: 1.015479e-01	ci left: 2.746851e-02	ci right 3.042652e-02	k: 1446	n:50000
GUSB   50000 perm   11 sec   (4459 perm/sec)   p_kst 2.892000e-02   p_cons 3.214200e-01   p_joint 5.770000e-02

Joint ci ratio: 6.448408e-02	ci left: 5.614278e-02	ci right 5.990012e-02	k: 3480	n:60000
Cons ci ratio: 2.271470e-02	ci left: 3.279326e-01	ci right 3.354837e-01	k: 19902	n:60000
KS ci ratio: 9.293197e-02	ci left: 2.746000e-02	ci right 3.015250e-02	k: 1727	n:60000
GUSB   60000 perm   14 sec   (4359 perm/sec)   p_kst 2.878333e-02   p_cons 3.317000e-01   p_joint 5.800000e-02

Outputting figure to mutsig2_images.part000000000076/GUSB.4_2004_60000_0.028783_0.3317_0.058.png
                gene_name: GUSB
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 31 percent done.
GXYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
KS ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
GXYLT1   10000 perm   2 sec   (5716 perm/sec)   p_kst 2.028000e-01   p_cons 6.450000e-02   p_joint 1.664000e-01

Joint ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
Cons ci ratio: 1.056925e-01	ci left: 6.093909e-02	ci right 6.778824e-02	k: 1286	n:20000
KS ci ratio: 5.471922e-02	ci left: 1.985820e-01	ci right 2.098041e-01	k: 4083	n:20000
GXYLT1   20000 perm   4 sec   (5182 perm/sec)   p_kst 2.041500e-01   p_cons 6.430000e-02   p_joint 1.309500e-01

Joint ci ratio: 6.413525e-02	ci left: 1.071707e-01	ci right 1.143049e-01	k: 3321	n:30000
Cons ci ratio: 8.578873e-02	ci left: 6.226857e-02	ci right 6.788268e-02	k: 1951	n:30000
KS ci ratio: 4.483463e-02	ci left: 1.984937e-01	ci right 2.076305e-01	k: 6091	n:30000
GXYLT1   30000 perm   6 sec   (4959 perm/sec)   p_kst 2.030333e-01   p_cons 6.503333e-02   p_joint 1.107000e-01

Outputting figure to mutsig2_images.part000000000076/GXYLT1.4_1355_30000_0.20303_0.065033_0.1107.png
                gene_name: GXYLT1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 33 percent done.
GZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
Cons ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
GZF1   10000 perm   2 sec   (5656 perm/sec)   p_kst 9.719000e-01   p_cons 2.316000e-01   p_joint 6.119000e-01

Outputting figure to mutsig2_images.part000000000076/GZF1.4_2156_10000_0.9719_0.2316_0.6119.png
                gene_name: GZF1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 35 percent done.
GZMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
Cons ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
KS ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
GZMA   10000 perm   2 sec   (6266 perm/sec)   p_kst 8.648000e-01   p_cons 7.220000e-02   p_joint 3.160000e-01

Joint ci ratio: 5.031872e-02	ci left: 2.269076e-01	ci right 2.386702e-01	k: 4655	n:20000
Cons ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
KS ci ratio: 1.101449e-02	ci left: 8.588163e-01	ci right 8.683778e-01	k: 17273	n:20000
GZMA   20000 perm   4 sec   (5615 perm/sec)   p_kst 8.636500e-01   p_cons 6.510000e-02   p_joint 2.327500e-01

Joint ci ratio: 4.430590e-02	ci left: 2.023280e-01	ci right 2.115288e-01	k: 6207	n:30000
Cons ci ratio: 8.825665e-02	ci left: 5.897053e-02	ci right 6.444807e-02	k: 1850	n:30000
KS ci ratio: 9.001322e-03	ci left: 8.594957e-01	ci right 8.673004e-01	k: 25903	n:30000
GZMA   30000 perm   6 sec   (5362 perm/sec)   p_kst 8.634333e-01   p_cons 6.166667e-02   p_joint 2.069000e-01

Outputting figure to mutsig2_images.part000000000076/GZMA.4_809_30000_0.86343_0.061667_0.2069.png
                gene_name: GZMA
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
HACE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
Cons ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KS ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
HACE1   10000 perm   2 sec   (5030 perm/sec)   p_kst 3.622000e-01   p_cons 3.660000e-02   p_joint 3.588000e-01

Joint ci ratio: 5.031872e-02	ci left: 2.269076e-01	ci right 2.386702e-01	k: 4655	n:20000
Cons ci ratio: 1.475196e-01	ci left: 3.157949e-02	ci right 3.665714e-02	k: 681	n:20000
KS ci ratio: 3.701042e-02	ci left: 3.526463e-01	ci right 3.659946e-01	k: 7186	n:20000
HACE1   20000 perm   4 sec   (4606 perm/sec)   p_kst 3.593000e-01   p_cons 3.405000e-02   p_joint 2.327500e-01

Joint ci ratio: 5.093074e-02	ci left: 1.606837e-01	ci right 1.691146e-01	k: 4946	n:30000
Cons ci ratio: 1.226391e-01	ci left: 3.091021e-02	ci right 3.498090e-02	k: 987	n:30000
KS ci ratio: 3.018279e-02	ci left: 3.544326e-01	ci right 3.653279e-01	k: 10796	n:30000
HACE1   30000 perm   7 sec   (4445 perm/sec)   p_kst 3.598667e-01   p_cons 3.290000e-02   p_joint 1.648667e-01

Joint ci ratio: 3.614277e-02	ci left: 2.231259e-01	ci right 2.313637e-01	k: 9089	n:40000
Cons ci ratio: 1.047915e-01	ci left: 3.202608e-02	ci right 3.559202e-02	k: 1351	n:40000
KS ci ratio: 2.624147e-02	ci left: 3.533746e-01	ci right 3.627960e-01	k: 14323	n:40000
HACE1   40000 perm   9 sec   (4335 perm/sec)   p_kst 3.580750e-01   p_cons 3.377500e-02   p_joint 2.272250e-01

Joint ci ratio: 3.343232e-02	ci left: 2.120418e-01	ci right 2.192713e-01	k: 10782	n:50000
Cons ci ratio: 9.375733e-02	ci left: 3.219402e-02	ci right 3.538041e-02	k: 1688	n:50000
KS ci ratio: 2.341503e-02	ci left: 3.549731e-01	ci right 3.634033e-01	k: 17959	n:50000
HACE1   50000 perm   12 sec   (4233 perm/sec)   p_kst 3.591800e-01   p_cons 3.376000e-02   p_joint 2.156400e-01

Outputting figure to mutsig2_images.part000000000076/HACE1.4_2826_50000_0.35918_0.03376_0.21564.png
                gene_name: HACE1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
HADH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115922e-02	ci left: 9.197660e-01	ci right 9.301849e-01	k: 9251	n:10000
Cons ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
KS ci ratio: 2.171434e-02	ci left: 7.567657e-01	ci right 7.734796e-01	k: 7652	n:10000
HADH   10000 perm   2 sec   (5370 perm/sec)   p_kst 7.652000e-01   p_cons 9.726000e-01   p_joint 9.251000e-01

Outputting figure to mutsig2_images.part000000000076/HADH.4_1032_10000_0.7652_0.9726_0.9251.png
                gene_name: HADH
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 41 percent done.
HADHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
HADHB   10000 perm   2 sec   (5639 perm/sec)   p_kst 3.547000e-01   p_cons 7.788000e-01   p_joint 4.920000e-01

Outputting figure to mutsig2_images.part000000000076/HADHB.4_1485_10000_0.3547_0.7788_0.492.png
                gene_name: HADHB
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 43 percent done.
HAO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.993534e-02	ci left: 6.220585e-01	ci right 6.410648e-01	k: 6316	n:10000
Cons ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
KS ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
HAO1   10000 perm   2 sec   (5450 perm/sec)   p_kst 5.920000e-01   p_cons 3.900000e-01   p_joint 6.316000e-01

Outputting figure to mutsig2_images.part000000000076/HAO1.4_1145_10000_0.592_0.39_0.6316.png
                gene_name: HAO1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 45 percent done.
HAPLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
Cons ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
KS ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
HAPLN4   10000 perm   2 sec   (5912 perm/sec)   p_kst 5.139000e-01   p_cons 5.450000e-02   p_joint 1.195000e-01

Joint ci ratio: 5.035396e-02	ci left: 2.266598e-01	ci right 2.384181e-01	k: 4650	n:20000
Cons ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
KS ci ratio: 2.749293e-02	ci left: 4.970955e-01	ci right 5.110033e-01	k: 10081	n:20000
HAPLN4   20000 perm   4 sec   (5360 perm/sec)   p_kst 5.040500e-01   p_cons 5.875000e-02   p_joint 2.325000e-01

Joint ci ratio: 4.714306e-02	ci left: 1.828658e-01	ci right 1.917281e-01	k: 5618	n:30000
Cons ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
KS ci ratio: 2.238492e-02	ci left: 4.997921e-01	ci right 5.111402e-01	k: 15164	n:30000
HAPLN4   30000 perm   6 sec   (5122 perm/sec)   p_kst 5.054667e-01   p_cons 5.423333e-02   p_joint 1.872667e-01

Outputting figure to mutsig2_images.part000000000076/HAPLN4.4_1229_30000_0.50547_0.054233_0.18727.png
                gene_name: HAPLN4
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
HAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
HAS1   10000 perm   2 sec   (5698 perm/sec)   p_kst 1.390000e-02   p_cons 2.303000e-01   p_joint 7.750000e-02

Joint ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
Cons ci ratio: 5.032577e-02	ci left: 2.268580e-01	ci right 2.386198e-01	k: 4654	n:20000
KS ci ratio: 2.458647e-01	ci left: 1.100641e-02	ci right 1.413769e-02	k: 250	n:20000
HAS1   20000 perm   4 sec   (5161 perm/sec)   p_kst 1.250000e-02   p_cons 2.327000e-01   p_joint 5.040000e-02

Joint ci ratio: 1.075102e-01	ci left: 4.014760e-02	ci right 4.474154e-02	k: 1272	n:30000
Cons ci ratio: 4.132045e-02	ci left: 2.259755e-01	ci right 2.355433e-01	k: 6922	n:30000
KS ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
HAS1   30000 perm   6 sec   (4918 perm/sec)   p_kst 1.263333e-02   p_cons 2.307333e-01   p_joint 4.240000e-02

Joint ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
Cons ci ratio: 3.583930e-02	ci left: 2.260819e-01	ci right 2.343573e-01	k: 9208	n:40000
KS ci ratio: 1.706141e-01	ci left: 1.191290e-02	ci right 1.415862e-02	k: 520	n:40000
HAS1   40000 perm   8 sec   (4776 perm/sec)   p_kst 1.300000e-02   p_cons 2.302000e-01   p_joint 3.760000e-02

Joint ci ratio: 9.620117e-02	ci left: 3.059174e-02	ci right 3.370289e-02	k: 1606	n:50000
Cons ci ratio: 3.197855e-02	ci left: 2.273711e-01	ci right 2.347802e-01	k: 11553	n:50000
KS ci ratio: 1.525133e-01	ci left: 1.204472e-02	ci right 1.405240e-02	k: 651	n:50000
HAS1   50000 perm   11 sec   (4656 perm/sec)   p_kst 1.302000e-02   p_cons 2.310600e-01   p_joint 3.212000e-02

Joint ci ratio: 1.098022e-01	ci left: 1.965674e-02	ci right 2.195660e-02	k: 1247	n:60000
Cons ci ratio: 2.922081e-02	ci left: 2.273504e-01	ci right 2.341090e-01	k: 13843	n:60000
KS ci ratio: 1.411947e-01	ci left: 1.178714e-02	ci right 1.359378e-02	k: 760	n:60000
HAS1   60000 perm   13 sec   (4548 perm/sec)   p_kst 1.266667e-02   p_cons 2.307167e-01   p_joint 2.078333e-02

Joint ci ratio: 8.333193e-02	ci left: 2.936445e-02	ci right 3.193179e-02	k: 2144	n:70000
Cons ci ratio: 2.710814e-02	ci left: 2.268866e-01	ci right 2.331358e-01	k: 16100	n:70000
KS ci ratio: 1.289549e-01	ci left: 1.218779e-02	ci right 1.388150e-02	k: 911	n:70000
HAS1   70000 perm   16 sec   (4451 perm/sec)   p_kst 1.301429e-02   p_cons 2.300000e-01   p_joint 3.062857e-02

Joint ci ratio: 7.676949e-02	ci left: 3.034949e-02	ci right 3.278464e-02	k: 2524	n:80000
Cons ci ratio: 2.534854e-02	ci left: 2.272119e-01	ci right 2.330577e-01	k: 18410	n:80000
KS ci ratio: 1.190895e-01	ci left: 1.256615e-02	ci right 1.416943e-02	k: 1068	n:80000
HAS1   80000 perm   18 sec   (4361 perm/sec)   p_kst 1.335000e-02   p_cons 2.301250e-01   p_joint 3.155000e-02

Joint ci ratio: 6.703867e-02	ci left: 3.537168e-02	ci right 3.783609e-02	k: 3293	n:90000
Cons ci ratio: 2.393364e-02	ci left: 2.268665e-01	ci right 2.323731e-01	k: 20665	n:90000
KS ci ratio: 1.122137e-01	ci left: 1.262656e-02	ci right 1.413838e-02	k: 1203	n:90000
HAS1   90000 perm   21 sec   (4277 perm/sec)   p_kst 1.336667e-02   p_cons 2.296111e-01   p_joint 3.658889e-02

Joint ci ratio: 6.484075e-02	ci left: 3.411553e-02	ci right 3.641153e-02	k: 3525	n:100000
Cons ci ratio: 2.269341e-02	ci left: 2.271954e-01	ci right 2.324203e-01	k: 22980	n:100000
KS ci ratio: 1.061253e-01	ci left: 1.274519e-02	ci right 1.418324e-02	k: 1345	n:100000
HAS1   100000 perm   24 sec   (4203 perm/sec)   p_kst 1.345000e-02   p_cons 2.298000e-01   p_joint 3.525000e-02

Joint ci ratio: 6.791010e-02	ci left: 2.840067e-02	ci right 3.040606e-02	k: 3233	n:110000
Cons ci ratio: 2.167244e-02	ci left: 2.267459e-01	ci right 2.317229e-01	k: 25215	n:110000
KS ci ratio: 1.016257e-01	ci left: 1.266679e-02	ci right 1.403178e-02	k: 1467	n:110000
HAS1   110000 perm   27 sec   (4130 perm/sec)   p_kst 1.333636e-02   p_cons 2.292273e-01   p_joint 2.939091e-02

Joint ci ratio: 6.163546e-02	ci left: 3.160236e-02	ci right 3.362031e-02	k: 3912	n:120000
Cons ci ratio: 2.077152e-02	ci left: 2.264839e-01	ci right 2.312459e-01	k: 27463	n:120000
KS ci ratio: 9.777856e-02	ci left: 1.257001e-02	ci right 1.387034e-02	k: 1585	n:120000
HAS1   120000 perm   30 sec   (4060 perm/sec)   p_kst 1.320833e-02   p_cons 2.288583e-01   p_joint 3.260000e-02

Outputting figure to mutsig2_images.part000000000076/HAS1.4_1757_120000_0.013208_0.22886_0.0326.png
                gene_name: HAS1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 49 percent done.
GTF3C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
GTF3C5   10000 perm   2 sec   (5879 perm/sec)   p_kst 8.144000e-01   p_cons 8.408000e-01   p_joint 9.567000e-01

Outputting figure to mutsig2_images.part000000000076/GTF3C5.3_1629_10000_0.8144_0.8408_0.9567.png
                gene_name: GTF3C5
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 51 percent done.
GTSE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
Cons ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
KS ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
GTSE1   10000 perm   2 sec   (5843 perm/sec)   p_kst 2.655000e-01   p_cons 5.154000e-01   p_joint 4.833000e-01

Outputting figure to mutsig2_images.part000000000076/GTSE1.3_2264_10000_0.2655_0.5154_0.4833.png
                gene_name: GTSE1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 53 percent done.
GUCA2B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
KS ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
GUCA2B   10000 perm   1 sec   (6893 perm/sec)   p_kst 2.177000e-01   p_cons 8.697000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000076/GUCA2B.2_351_10000_0.2177_0.8697_0.7239.png
                gene_name: GUCA2B
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 55 percent done.
GYS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
KS ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
GYS2   10000 perm   2 sec   (5700 perm/sec)   p_kst 6.029000e-01   p_cons 6.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GYS2.3_2176_10000_0.6029_0.6908_1.png
                gene_name: GYS2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
GZMB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.197531e-02	ci left: 9.090537e-01	ci right 9.201034e-01	k: 9147	n:10000
Cons ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
KS ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
GZMB   10000 perm   1 sec   (6880 perm/sec)   p_kst 2.777000e-01   p_cons 3.780000e-02   p_joint 9.147000e-01

Joint ci ratio: 7.869003e-03	ci left: 9.217225e-01	ci right 9.290532e-01	k: 18509	n:20000
Cons ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
KS ci ratio: 4.479819e-02	ci left: 2.706070e-01	ci right 2.830579e-01	k: 5536	n:20000
GZMB   20000 perm   3 sec   (6133 perm/sec)   p_kst 2.768000e-01   p_cons 3.605000e-02   p_joint 9.254500e-01

Joint ci ratio: 7.354767e-03	ci left: 9.011183e-01	ci right 9.078032e-01	k: 27135	n:30000
Cons ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
KS ci ratio: 3.653658e-02	ci left: 2.722062e-01	ci right 2.823703e-01	k: 8318	n:30000
GZMB   30000 perm   5 sec   (5795 perm/sec)   p_kst 2.772667e-01   p_cons 3.573333e-02   p_joint 9.045000e-01

Joint ci ratio: 6.380298e-03	ci left: 9.012738e-01	ci right 9.070673e-01	k: 36168	n:40000
Cons ci ratio: 1.017169e-01	ci left: 3.397616e-02	ci right 3.764163e-02	k: 1431	n:40000
KS ci ratio: 3.166929e-02	ci left: 2.725436e-01	ci right 2.813388e-01	k: 11077	n:40000
GZMB   40000 perm   7 sec   (5588 perm/sec)   p_kst 2.769250e-01   p_cons 3.577500e-02   p_joint 9.042000e-01

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 8.994144e-02	ci left: 3.495147e-02	ci right 3.826261e-02	k: 1829	n:50000
KS ci ratio: 2.837477e-02	ci left: 2.723238e-01	ci right 2.801822e-01	k: 13812	n:50000
GZMB   50000 perm   9 sec   (5409 perm/sec)   p_kst 2.762400e-01   p_cons 3.658000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GZMB.2_764_50000_0.27624_0.03658_1.png
                gene_name: GZMB
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
H6PD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
Cons ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
KS ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
H6PD   10000 perm   2 sec   (5649 perm/sec)   p_kst 4.451000e-01   p_cons 8.736000e-01   p_joint 6.427000e-01

Outputting figure to mutsig2_images.part000000000076/H6PD.3_2392_10000_0.4451_0.8736_0.6427.png
                gene_name: H6PD
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 61 percent done.
HADHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
HADHA   10000 perm   2 sec   (5844 perm/sec)   p_kst 5.061000e-01   p_cons 1.290000e-01   p_joint 4.449000e-01

Joint ci ratio: 1.660289e-02	ci left: 7.297816e-01	ci right 7.420498e-01	k: 14719	n:20000
Cons ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
KS ci ratio: 2.761416e-02	ci left: 4.948957e-01	ci right 5.088038e-01	k: 10037	n:20000
HADHA   20000 perm   4 sec   (5265 perm/sec)   p_kst 5.018500e-01   p_cons 1.281000e-01   p_joint 7.359500e-01

Outputting figure to mutsig2_images.part000000000076/HADHA.3_2372_20000_0.50185_0.1281_0.73595.png
                gene_name: HADHA
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 63 percent done.
HAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
Cons ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
HAND1   10000 perm   2 sec   (6422 perm/sec)   p_kst 7.350000e-02   p_cons 2.772000e-01   p_joint 1.292000e-01

Joint ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
Cons ci ratio: 4.449803e-02	ci left: 2.732881e-01	ci right 2.857760e-01	k: 5590	n:20000
KS ci ratio: 9.833821e-02	ci left: 6.996946e-02	ci right 7.725509e-02	k: 1471	n:20000
HAND1   20000 perm   3 sec   (5753 perm/sec)   p_kst 7.355000e-02   p_cons 2.795000e-01   p_joint 1.282000e-01

Outputting figure to mutsig2_images.part000000000076/HAND1.3_656_20000_0.07355_0.2795_0.1282.png
                gene_name: HAND1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 65 percent done.
HAND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
HAND2   10000 perm   1 sec   (6670 perm/sec)   p_kst 4.548000e-01   p_cons 7.500000e-03   p_joint 3.420000e-02

Joint ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
Cons ci ratio: 3.177907e-01	ci left: 6.351314e-03	ci right 8.795126e-03	k: 150	n:20000
KS ci ratio: 3.054260e-02	ci left: 4.446855e-01	ci right 4.585286e-01	k: 9032	n:20000
HAND2   20000 perm   3 sec   (5901 perm/sec)   p_kst 4.516000e-01   p_cons 7.500000e-03   p_joint 2.325000e-02

Joint ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
Cons ci ratio: 2.645252e-01	ci left: 6.305714e-03	ci right 8.258200e-03	k: 217	n:30000
KS ci ratio: 2.495206e-02	ci left: 4.456905e-01	ci right 4.569855e-01	k: 13540	n:30000
HAND2   30000 perm   5 sec   (5572 perm/sec)   p_kst 4.513333e-01   p_cons 7.233333e-03   p_joint 3.946667e-02

Joint ci ratio: 1.201400e-01	ci left: 2.436542e-02	ci right 2.750392e-02	k: 1036	n:40000
Cons ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
KS ci ratio: 2.157383e-02	ci left: 4.472637e-01	ci right 4.570432e-01	k: 18086	n:40000
HAND2   40000 perm   7 sec   (5379 perm/sec)   p_kst 4.521500e-01   p_cons 7.025000e-03   p_joint 2.590000e-02

Joint ci ratio: 1.182093e-01	ci left: 2.024649e-02	ci right 2.280948e-02	k: 1075	n:50000
Cons ci ratio: 2.112411e-01	ci left: 6.117362e-03	ci right 7.580775e-03	k: 341	n:50000
KS ci ratio: 1.925554e-02	ci left: 4.488295e-01	ci right 4.575760e-01	k: 22660	n:50000
HAND2   50000 perm   10 sec   (5220 perm/sec)   p_kst 4.532000e-01   p_cons 6.820000e-03   p_joint 2.150000e-02

Joint ci ratio: 1.030473e-01	ci left: 2.233514e-02	ci right 2.477791e-02	k: 1412	n:60000
Cons ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
KS ci ratio: 1.758738e-02	ci left: 4.489444e-01	ci right 4.569269e-01	k: 27176	n:60000
HAND2   60000 perm   12 sec   (5090 perm/sec)   p_kst 4.529333e-01   p_cons 6.950000e-03   p_joint 2.353333e-02

Joint ci ratio: 1.045154e-01	ci left: 1.866942e-02	ci right 2.074209e-02	k: 1378	n:70000
Cons ci ratio: 1.745036e-01	ci left: 6.532365e-03	ci right 7.794720e-03	k: 500	n:70000
KS ci ratio: 1.630693e-02	ci left: 4.485079e-01	ci right 4.558961e-01	k: 31654	n:70000
HAND2   70000 perm   14 sec   (4968 perm/sec)   p_kst 4.522000e-01   p_cons 7.142857e-03   p_joint 1.968571e-02

Joint ci ratio: 1.029505e-01	ci left: 1.688284e-02	ci right 1.872737e-02	k: 1423	n:80000
Cons ci ratio: 1.612000e-01	ci left: 6.745777e-03	ci right 7.940369e-03	k: 586	n:80000
KS ci ratio: 1.525148e-02	ci left: 4.488216e-01	ci right 4.557319e-01	k: 36182	n:80000
HAND2   80000 perm   16 sec   (4855 perm/sec)   p_kst 4.522750e-01   p_cons 7.325000e-03   p_joint 1.778750e-02

Joint ci ratio: 8.890448e-02	ci left: 2.020357e-02	ci right 2.209414e-02	k: 1902	n:90000
Cons ci ratio: 1.521406e-01	ci left: 6.764905e-03	ci right 7.889423e-03	k: 658	n:90000
KS ci ratio: 1.438467e-02	ci left: 4.488333e-01	ci right 4.553475e-01	k: 40688	n:90000
HAND2   90000 perm   19 sec   (4739 perm/sec)   p_kst 4.520889e-01   p_cons 7.311111e-03   p_joint 2.113333e-02

Joint ci ratio: 9.386948e-02	ci left: 1.633481e-02	ci right 1.795337e-02	k: 1713	n:100000
Cons ci ratio: 1.370898e-01	ci left: 7.553753e-03	ci right 8.675060e-03	k: 810	n:100000
KS ci ratio: 1.363850e-02	ci left: 4.492915e-01	ci right 4.554712e-01	k: 45238	n:100000
HAND2   100000 perm   22 sec   (4638 perm/sec)   p_kst 4.523800e-01   p_cons 8.100000e-03   p_joint 1.713000e-02

Joint ci ratio: 9.775025e-02	ci left: 1.370426e-02	ci right 1.512151e-02	k: 1584	n:110000
Cons ci ratio: 1.310140e-01	ci left: 7.543576e-03	ci right 8.609878e-03	k: 887	n:110000
KS ci ratio: 1.299423e-02	ci left: 4.498007e-01	ci right 4.556927e-01	k: 49802	n:110000
HAND2   110000 perm   24 sec   (4540 perm/sec)   p_kst 4.527455e-01   p_cons 8.063636e-03   p_joint 1.440000e-02

Joint ci ratio: 6.826743e-02	ci left: 2.582798e-02	ci right 2.766166e-02	k: 3208	n:120000
Cons ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
KS ci ratio: 1.243299e-02	ci left: 4.502472e-01	ci right 4.558884e-01	k: 54368	n:120000
HAND2   120000 perm   27 sec   (4458 perm/sec)   p_kst 4.530667e-01   p_cons 8.091667e-03   p_joint 2.673333e-02

Joint ci ratio: 6.645272e-02	ci left: 2.520223e-02	ci right 2.694208e-02	k: 3388	n:130000
Cons ci ratio: 1.202531e-01	ci left: 7.619900e-03	ci right 8.602232e-03	k: 1053	n:130000
KS ci ratio: 1.194722e-02	ci left: 4.502759e-01	ci right 4.556954e-01	k: 58888	n:130000
HAND2   130000 perm   30 sec   (4376 perm/sec)   p_kst 4.529846e-01   p_cons 8.100000e-03   p_joint 2.606154e-02

Joint ci ratio: 6.748155e-02	ci left: 2.274090e-02	ci right 2.433607e-02	k: 3294	n:140000
Cons ci ratio: 1.157800e-01	ci left: 7.650987e-03	ci right 8.598127e-03	k: 1136	n:140000
KS ci ratio: 1.152307e-02	ci left: 4.499259e-01	ci right 4.551475e-01	k: 63355	n:140000
HAND2   140000 perm   33 sec   (4300 perm/sec)   p_kst 4.525357e-01   p_cons 8.114286e-03   p_joint 2.352857e-02

Joint ci ratio: 7.942416e-02	ci left: 1.534491e-02	ci right 1.662057e-02	k: 2396	n:150000
Cons ci ratio: 1.117716e-01	ci left: 7.678515e-03	ci right 8.593984e-03	k: 1219	n:150000
KS ci ratio: 1.111340e-02	ci left: 4.508583e-01	ci right 4.559035e-01	k: 68007	n:150000
HAND2   150000 perm   35 sec   (4225 perm/sec)   p_kst 4.533800e-01   p_cons 8.126667e-03   p_joint 1.597333e-02

Joint ci ratio: 6.881957e-02	ci left: 1.919056e-02	ci right 2.056442e-02	k: 3179	n:160000
Cons ci ratio: 1.088283e-01	ci left: 7.605789e-03	ci right 8.487177e-03	k: 1286	n:160000
KS ci ratio: 1.076334e-02	ci left: 4.508085e-01	ci right 4.556932e-01	k: 72520	n:160000
HAND2   160000 perm   39 sec   (4155 perm/sec)   p_kst 4.532500e-01   p_cons 8.037500e-03   p_joint 1.986875e-02

Joint ci ratio: 6.838009e-02	ci left: 1.831580e-02	ci right 1.961833e-02	k: 3223	n:170000
Cons ci ratio: 1.059088e-01	ci left: 7.570539e-03	ci right 8.422839e-03	k: 1358	n:170000
KS ci ratio: 1.044068e-02	ci left: 4.509432e-01	ci right 4.556819e-01	k: 77063	n:170000
HAND2   170000 perm   42 sec   (4087 perm/sec)   p_kst 4.533118e-01   p_cons 7.988235e-03   p_joint 1.895882e-02

Joint ci ratio: 6.457593e-02	ci left: 1.941288e-02	ci right 2.071375e-02	k: 3610	n:180000
Cons ci ratio: 1.034312e-01	ci left: 7.507008e-03	ci right 8.331181e-03	k: 1424	n:180000
KS ci ratio: 1.014574e-02	ci left: 4.510482e-01	ci right 4.556533e-01	k: 81603	n:180000
HAND2   180000 perm   45 sec   (4020 perm/sec)   p_kst 4.533500e-01   p_cons 7.911111e-03   p_joint 2.005556e-02

Joint ci ratio: 6.558002e-02	ci left: 1.785221e-02	ci right 1.906780e-02	k: 3506	n:190000
Cons ci ratio: 1.006108e-01	ci left: 7.527344e-03	ci right 8.329884e-03	k: 1505	n:190000
KS ci ratio: 9.883796e-03	ci left: 4.506756e-01	ci right 4.551574e-01	k: 86054	n:190000
HAND2   190000 perm   48 sec   (3956 perm/sec)   p_kst 4.529158e-01   p_cons 7.921053e-03   p_joint 1.845263e-02

Joint ci ratio: 6.385415e-02	ci left: 1.790408e-02	ci right 1.908993e-02	k: 3698	n:200000
Cons ci ratio: 9.804029e-02	ci left: 7.541043e-03	ci right 8.323320e-03	k: 1585	n:200000
KS ci ratio: 9.632386e-03	ci left: 4.507916e-01	ci right 4.551598e-01	k: 90595	n:200000
HAND2   200000 perm   51 sec   (3893 perm/sec)   p_kst 4.529750e-01   p_cons 7.925000e-03   p_joint 1.849000e-02

Outputting figure to mutsig2_images.part000000000076/HAND2.3_662_200000_0.45298_0.007925_0.01849.png
                gene_name: HAND2
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0079 
      ci_cons_bounds_left: 0.0075 
     ci_cons_bounds_right: 0.0083 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 67 percent done.
HARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
Cons ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
HARS2   10000 perm   2 sec   (6137 perm/sec)   p_kst 3.419000e-01   p_cons 9.904000e-01   p_joint 4.491000e-01

Outputting figure to mutsig2_images.part000000000076/HARS2.3_1573_10000_0.3419_0.9904_0.4491.png
                gene_name: HARS2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 69 percent done.
HAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
KS ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
HAS3   10000 perm   2 sec   (5803 perm/sec)   p_kst 5.056000e-01   p_cons 2.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HAS3.3_1786_10000_0.5056_0.2756_1.png
                gene_name: HAS3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
HAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.138278e-02	ci left: 3.583386e-01	ci right 3.773385e-01	k: 3678	n:10000
Cons ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
KS ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
HAT1   10000 perm   2 sec   (6255 perm/sec)   p_kst 3.135000e-01   p_cons 7.860000e-01   p_joint 3.678000e-01

Outputting figure to mutsig2_images.part000000000076/HAT1.3_1304_10000_0.3135_0.786_0.3678.png
                gene_name: HAT1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 73 percent done.
GUK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.507071e-03	ci left: 9.508566e-01	ci right 9.590757e-01	k: 9551	n:10000
Cons ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
GUK1   10000 perm   1 sec   (6726 perm/sec)   p_kst 4.008000e-01   p_cons 7.719000e-01   p_joint 9.551000e-01

Outputting figure to mutsig2_images.part000000000076/GUK1.2_689_10000_0.4008_0.7719_0.9551.png
                gene_name: GUK1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 75 percent done.
GYPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.777696e-03	ci left: 9.367201e-01	ci right 9.460207e-01	k: 9415	n:10000
Cons ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
KS ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
GYPC   10000 perm   1 sec   (6967 perm/sec)   p_kst 2.356000e-01   p_cons 7.672000e-01   p_joint 9.415000e-01

Outputting figure to mutsig2_images.part000000000076/GYPC.2_403_10000_0.2356_0.7672_0.9415.png
                gene_name: GYPC
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 76 percent done.
GYS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
Cons ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
KS ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
GYS1   10000 perm   2 sec   (5945 perm/sec)   p_kst 8.309000e-01   p_cons 1.371000e-01   p_joint 8.998000e-01

Outputting figure to mutsig2_images.part000000000076/GYS1.2_2278_10000_0.8309_0.1371_0.8998.png
                gene_name: GYS1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 78 percent done.
GZMH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
Cons ci ratio: 2.478420e-02	ci left: 7.054353e-01	ci right 7.232397e-01	k: 7144	n:10000
KS ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
GZMH   10000 perm   1 sec   (6930 perm/sec)   p_kst 7.290000e-01   p_cons 7.144000e-01   p_joint 8.461000e-01

Outputting figure to mutsig2_images.part000000000076/GZMH.2_761_10000_0.729_0.7144_0.8461.png
                gene_name: GZMH
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 80 percent done.
GZMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
KS ci ratio: 3.452240e-03	ci left: 9.904966e-01	ci right 9.940075e-01	k: 9924	n:10000
GZMK   10000 perm   1 sec   (6691 perm/sec)   p_kst 9.924000e-01   p_cons 9.096000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GZMK.2_815_10000_0.9924_0.9096_1.png
                gene_name: GZMK
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
H2AFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
Cons ci ratio: 5.904794e-02	ci left: 2.967772e-01	ci right 3.149361e-01	k: 3058	n:10000
KS ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
H2AFY2   10000 perm   2 sec   (6453 perm/sec)   p_kst 4.771000e-01   p_cons 3.058000e-01   p_joint 8.543000e-01

Outputting figure to mutsig2_images.part000000000076/H2AFY2.2_1151_10000_0.4771_0.3058_0.8543.png
                gene_name: H2AFY2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 84 percent done.
H2BFWT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
KS ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
H2BFWT   10000 perm   1 sec   (6907 perm/sec)   p_kst 2.616000e-01   p_cons 8.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/H2BFWT.2_536_10000_0.2616_0.8487_1.png
                gene_name: H2BFWT
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
H3F3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.199829e-02	ci left: 9.087451e-01	ci right 9.198122e-01	k: 9144	n:10000
Cons ci ratio: 2.190155e-02	ci left: 7.536289e-01	ci right 7.704182e-01	k: 7621	n:10000
KS ci ratio: 3.905330e-02	ci left: 4.919509e-01	ci right 5.116480e-01	k: 5018	n:10000
H3F3B   10000 perm   1 sec   (6929 perm/sec)   p_kst 5.018000e-01   p_cons 7.621000e-01   p_joint 9.144000e-01

Outputting figure to mutsig2_images.part000000000076/H3F3B.2_423_10000_0.5018_0.7621_0.9144.png
                gene_name: H3F3B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 88 percent done.
HABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
KS ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
HABP2   10000 perm   2 sec   (6238 perm/sec)   p_kst 9.365000e-01   p_cons 4.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HABP2.2_1735_10000_0.9365_0.4664_1.png
                gene_name: HABP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
HACL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
Cons ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
KS ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
HACL1   10000 perm   2 sec   (6416 perm/sec)   p_kst 6.087000e-01   p_cons 2.610000e-02   p_joint 4.784000e-01

Joint ci ratio: 3.500372e-02	ci left: 3.785972e-01	ci right 3.921362e-01	k: 7707	n:20000
Cons ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
KS ci ratio: 2.222995e-02	ci left: 6.017454e-01	ci right 6.153231e-01	k: 12171	n:20000
HACL1   20000 perm   4 sec   (5707 perm/sec)   p_kst 6.085500e-01   p_cons 2.790000e-02   p_joint 3.853500e-01

Joint ci ratio: 2.583018e-02	ci left: 4.286478e-01	ci right 4.398983e-01	k: 13028	n:30000
Cons ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
KS ci ratio: 1.831714e-02	ci left: 5.986398e-01	ci right 6.097401e-01	k: 18126	n:30000
HACL1   30000 perm   6 sec   (5437 perm/sec)   p_kst 6.042000e-01   p_cons 2.810000e-02   p_joint 4.342667e-01

Joint ci ratio: 1.089117e-02	ci left: 7.598827e-01	ci right 7.682290e-01	k: 30563	n:40000
Cons ci ratio: 1.139194e-01	ci left: 2.710989e-02	ci right 3.040899e-02	k: 1149	n:40000
KS ci ratio: 1.579369e-02	ci left: 6.014920e-01	ci right 6.110925e-01	k: 24252	n:40000
HACL1   40000 perm   8 sec   (5258 perm/sec)   p_kst 6.063000e-01   p_cons 2.872500e-02   p_joint 7.640750e-01

Joint ci ratio: 2.165710e-02	ci left: 3.915497e-01	ci right 4.001424e-01	k: 19792	n:50000
Cons ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
KS ci ratio: 1.417436e-02	ci left: 6.003785e-01	ci right 6.089693e-01	k: 30234	n:50000
HACL1   50000 perm   10 sec   (5110 perm/sec)   p_kst 6.046800e-01   p_cons 2.870000e-02   p_joint 3.958400e-01

Joint ci ratio: 1.975196e-02	ci left: 3.923664e-01	ci right 4.002103e-01	k: 23777	n:60000
Cons ci ratio: 9.268374e-02	ci left: 2.760661e-02	ci right 3.030587e-02	k: 1736	n:60000
KS ci ratio: 1.293977e-02	ci left: 6.007412e-01	ci right 6.085820e-01	k: 36280	n:60000
HACL1   60000 perm   12 sec   (4982 perm/sec)   p_kst 6.046667e-01   p_cons 2.893333e-02   p_joint 3.962833e-01

Outputting figure to mutsig2_images.part000000000076/HACL1.2_1805_60000_0.60467_0.028933_0.39628.png
                gene_name: HACL1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 92 percent done.
HAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177489e-02	ci left: 9.117293e-01	ci right 9.226262e-01	k: 9173	n:10000
Cons ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
HAL   10000 perm   2 sec   (6080 perm/sec)   p_kst 7.107000e-01   p_cons 7.781000e-01   p_joint 9.173000e-01

Outputting figure to mutsig2_images.part000000000076/HAL.2_2054_10000_0.7107_0.7781_0.9173.png
                gene_name: HAL
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 94 percent done.
HAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
HAP1   10000 perm   2 sec   (6155 perm/sec)   p_kst 2.286000e-01   p_cons 6.790000e-02   p_joint 7.090000e-02

Joint ci ratio: 1.116030e-01	ci left: 5.484866e-02	ci right 6.138055e-02	k: 1161	n:20000
Cons ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
KS ci ratio: 5.057361e-02	ci left: 2.251237e-01	ci right 2.368546e-01	k: 4619	n:20000
HAP1   20000 perm   4 sec   (5539 perm/sec)   p_kst 2.309500e-01   p_cons 7.775000e-02   p_joint 5.805000e-02

Joint ci ratio: 9.934885e-02	ci left: 4.687726e-02	ci right 5.181048e-02	k: 1479	n:30000
Cons ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
KS ci ratio: 4.128944e-02	ci left: 2.262402e-01	ci right 2.358119e-01	k: 6930	n:30000
HAP1   30000 perm   6 sec   (5272 perm/sec)   p_kst 2.310000e-01   p_cons 7.853333e-02   p_joint 4.930000e-02

Outputting figure to mutsig2_images.part000000000076/HAP1.2_1928_30000_0.231_0.078533_0.0493.png
                gene_name: HAP1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 96 percent done.
HAPLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
KS ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
HAPLN3   10000 perm   2 sec   (6586 perm/sec)   p_kst 8.958000e-01   p_cons 9.080000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HAPLN3.2_1099_10000_0.8958_0.908_1.png
                gene_name: HAPLN3
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
KS ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
HARS   10000 perm   2 sec   (6294 perm/sec)   p_kst 9.818000e-01   p_cons 5.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HARS.2_1582_10000_0.9818_0.5481_1.png
                gene_name: HARS
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000076
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 76 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422007: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000077> was used as the working directory.
Started at Wed Oct 24 17:51:14 2012
Results reported at Wed Oct 24 18:03:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000077.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000077.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 77  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000077.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    741.79 sec.
    Max Memory :      5302 MB
    Max Swap   :      7599 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
77
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 77
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 77: processing genes 6877 - 6966
Calculating significance of each gene.
Using projection method.
6877	HAUS3	3.207981e-01
6878	HAUS4	4.826733e-01
6879	HAUS5	1
6880	HAUS6	9.893096e-01
6881	HAUS7	2.740821e-02
6882	HAUS8	8.035322e-01
6883	HAVCR1	7.122896e-01
6884	HAVCR2	5.932214e-01
6885	HAX1	1.240346e-01
6886	HBA1	1
6887	HBA2	1
6888	HBB	1.964197e-02
6889	HBD	7.383179e-03
6890	HBE1	3.147507e-01
6891	HBEGF	6.854988e-01
6892	HBG1	1.482771e-01
6893	HBG2	4.249725e-01
6894	HBM	3.610366e-01
6895	HBP1	1
6896	HBQ1	1
6897	HBS1L	9.320487e-01
6898	HBXIP	1
6899	HCCS	1
6900	HCFC1	9.965434e-01
6901	HCFC1R1	1
6902	HCFC2	5.102691e-01
6903	HCK	5.801763e-02
6904	HCLS1	5.124532e-02
6905	HCN1	9.124093e-01
In gene HCN2 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 1697    n = 1	mu =   3.68e-07
6906	HCN2	7.596736e-01
6907	HCN3	1
6908	HCN4	5.817633e-01
6909	HCP5	1
6910	HCRT	1.945305e-01
6911	HCRTR1	9.268765e-01
6912	HCRTR2	3.738266e-03
6913	HCST	1.662428e-02
6914	HDAC1	5.195808e-01
6915	HDAC10	1
6916	HDAC11	1
6917	HDAC2	1
6918	HDAC3	9.595280e-01
6919	HDAC4	7.438953e-01
6920	HDAC5	9.890160e-01
6921	HDAC6	9.805049e-01
6922	HDAC7	1
6923	HDAC8	7.538024e-01
6924	HDAC9	6.728447e-01
6925	HDC	7.372828e-01
6926	HDDC2	5.841209e-01
6927	HDDC3	1
6928	HDGF	2.141810e-01
6929	HDGFL1	1
6930	HDGFRP2	5.659660e-01
6931	HDGFRP3	4.143853e-02
6932	HDHD1A	1
6933	HDHD2	1
6934	HDHD3	8.152023e-01
6935	HDLBP	8.437384e-01
6936	HDX	1.006590e-01
6937	HEATR1	9.997244e-01
6938	HEATR2	9.588168e-01
6939	HEATR3	9.200459e-01
6940	HEATR4	9.169292e-01
6941	HEATR5A	1
6942	HEATR5B	9.785393e-01
6943	HEATR6	9.941937e-01
6944	HEATR7B2	4.200487e-06
6945	HEBP1	5.095330e-01
6946	HEBP2	1
6947	HECA	8.976473e-01
6948	HECTD1	9.995112e-01
6949	HECTD2	1.899936e-01
6950	HECTD3	3.685526e-01
6951	HECW1	1
6952	HECW2	9.549521e-01
6953	HEG1	9.793718e-01
6954	HELB	9.790132e-01
6955	HELLS	9.678138e-01
6956	HELQ	5.971253e-01
6957	HELT	8.032987e-01
6958	HELZ	7.775889e-01
6959	HEMGN	4.731256e-02
6960	HEMK1	1
6961	HEPACAM	4.076732e-01
6962	HEPACAM2	3.271121e-02
6963	HEPH	1
6964	HEPHL1	9.677193e-01
6965	HEPN1	8.548388e-02
6966	HERC1	1.000000e+00
Done

Running MutSig 2:
Scatter job 77: processing genes 6877 - 6966
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HEATR7B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
Cons ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
KS ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
HEATR7B2   10000 perm   3 sec   (3799 perm/sec)   p_kst 1.218000e-01   p_cons 2.342000e-01   p_joint 1.340000e-01

Joint ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
Cons ci ratio: 5.015027e-02	ci left: 2.280969e-01	ci right 2.398805e-01	k: 4679	n:20000
KS ci ratio: 7.488375e-02	ci left: 1.159695e-01	ci right 1.250412e-01	k: 2409	n:20000
HEATR7B2   20000 perm   8 sec   (2638 perm/sec)   p_kst 1.204500e-01   p_cons 2.339500e-01   p_joint 1.509500e-01

Outputting figure to mutsig2_images.part000000000077/HEATR7B2.36_4926_20000_0.12045_0.23395_0.15095.png
                gene_name: HEATR7B2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
HECW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
KS ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
HECW1   10000 perm   2 sec   (4332 perm/sec)   p_kst 5.637000e-01   p_cons 4.270000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000077/HECW1.24_4933_10000_0.5637_0.427_0.5841.png
                gene_name: HECW1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 4 percent done.
HDAC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
Cons ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
KS ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
HDAC9   10000 perm   2 sec   (4280 perm/sec)   p_kst 5.210000e-02   p_cons 8.360000e-02   p_joint 3.250000e-02

Joint ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
Cons ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
KS ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
HDAC9   20000 perm   5 sec   (3991 perm/sec)   p_kst 5.125000e-02   p_cons 8.400000e-02   p_joint 5.300000e-02

Joint ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
Cons ci ratio: 7.373392e-02	ci left: 8.291652e-02	ci right 8.929724e-02	k: 2582	n:30000
KS ci ratio: 9.837387e-02	ci left: 4.778864e-02	ci right 5.276558e-02	k: 1507	n:30000
HDAC9   30000 perm   8 sec   (3843 perm/sec)   p_kst 5.023333e-02   p_cons 8.606667e-02   p_joint 4.413333e-02

Joint ci ratio: 1.109732e-01	ci left: 2.856889e-02	ci right 3.194977e-02	k: 1209	n:40000
Cons ci ratio: 6.369391e-02	ci left: 8.373821e-02	ci right 8.927199e-02	k: 3459	n:40000
KS ci ratio: 8.527649e-02	ci left: 4.803137e-02	ci right 5.233424e-02	k: 2006	n:40000
HDAC9   40000 perm   11 sec   (3794 perm/sec)   p_kst 5.015000e-02   p_cons 8.647500e-02   p_joint 3.022500e-02

Joint ci ratio: 8.978876e-02	ci left: 3.506887e-02	ci right 3.838520e-02	k: 1835	n:50000
Cons ci ratio: 5.705637e-02	ci left: 8.379351e-02	ci right 8.873465e-02	k: 4312	n:50000
KS ci ratio: 7.664034e-02	ci left: 4.781129e-02	ci right 5.164120e-02	k: 2485	n:50000
HDAC9   50000 perm   13 sec   (3760 perm/sec)   p_kst 4.970000e-02   p_cons 8.624000e-02   p_joint 3.670000e-02

Outputting figure to mutsig2_images.part000000000077/HDAC9.20_3446_50000_0.0497_0.08624_0.0367.png
                gene_name: HDAC9
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 5 percent done.
HCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
Cons ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
KS ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
HCN1   10000 perm   2 sec   (5106 perm/sec)   p_kst 1.543000e-01   p_cons 4.114000e-01   p_joint 2.431000e-01

Outputting figure to mutsig2_images.part000000000077/HCN1.19_2705_10000_0.1543_0.4114_0.2431.png
                gene_name: HCN1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
HEATR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
KS ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
HEATR1   10000 perm   2 sec   (4155 perm/sec)   p_kst 4.763000e-01   p_cons 2.787000e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR1.16_6611_10000_0.4763_0.2787_0.4384.png
                gene_name: HEATR1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 9 percent done.
HECW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
Cons ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
KS ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
HECW2   10000 perm   2 sec   (4857 perm/sec)   p_kst 4.106000e-01   p_cons 7.901000e-01   p_joint 7.054000e-01

Outputting figure to mutsig2_images.part000000000077/HECW2.16_4831_10000_0.4106_0.7901_0.7054.png
                gene_name: HECW2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 11 percent done.
HEPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
KS ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
HEPH   10000 perm   2 sec   (4738 perm/sec)   p_kst 5.890000e-02   p_cons 3.822000e-01   p_joint 7.900000e-02

Joint ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
Cons ci ratio: 3.574658e-02	ci left: 3.687324e-01	ci right 3.822038e-01	k: 7509	n:20000
KS ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
HEPH   20000 perm   5 sec   (4373 perm/sec)   p_kst 6.020000e-02   p_cons 3.754500e-01   p_joint 1.030000e-01

Joint ci ratio: 6.580682e-02	ci left: 1.022754e-01	ci right 1.092678e-01	k: 3172	n:30000
Cons ci ratio: 2.931595e-02	ci left: 3.679223e-01	ci right 3.789023e-01	k: 11202	n:30000
KS ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
HEPH   30000 perm   7 sec   (4212 perm/sec)   p_kst 5.936667e-02   p_cons 3.734000e-01   p_joint 1.057333e-01

Outputting figure to mutsig2_images.part000000000077/HEPH.15_3723_30000_0.059367_0.3734_0.10573.png
                gene_name: HEPH
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 12 percent done.
HCRTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
HCRTR2   10000 perm   2 sec   (5369 perm/sec)   p_kst 2.153000e-01   p_cons 1.280000e-01   p_joint 1.610000e-01

Joint ci ratio: 4.919702e-02	ci left: 2.349865e-01	ci right 2.468889e-01	k: 4818	n:20000
Cons ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
KS ci ratio: 5.118620e-02	ci left: 2.209123e-01	ci right 2.325672e-01	k: 4534	n:20000
HCRTR2   20000 perm   4 sec   (4794 perm/sec)   p_kst 2.267000e-01   p_cons 1.294000e-01   p_joint 2.409000e-01

Outputting figure to mutsig2_images.part000000000077/HCRTR2.13_1363_20000_0.2267_0.1294_0.2409.png
                gene_name: HCRTR2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 14 percent done.
HEPHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
Cons ci ratio: 1.380573e-02	ci left: 8.833963e-01	ci right 8.957757e-01	k: 8897	n:10000
KS ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
HEPHL1   10000 perm   2 sec   (4846 perm/sec)   p_kst 6.821000e-01   p_cons 8.897000e-01   p_joint 8.628000e-01

Outputting figure to mutsig2_images.part000000000077/HEPHL1.13_3560_10000_0.6821_0.8897_0.8628.png
                gene_name: HEPHL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 16 percent done.
HECTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
Cons ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
HECTD1   10000 perm   3 sec   (3947 perm/sec)   p_kst 4.142000e-01   p_cons 2.412000e-01   p_joint 4.306000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD1.12_8001_10000_0.4142_0.2412_0.4306.png
                gene_name: HECTD1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 18 percent done.
HDAC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
Cons ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
KS ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
HDAC4   10000 perm   2 sec   (4859 perm/sec)   p_kst 6.791000e-01   p_cons 4.935000e-01   p_joint 8.370000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC4.11_3359_10000_0.6791_0.4935_0.837.png
                gene_name: HDAC4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 19 percent done.
HCFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
Cons ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
KS ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
HCFC1   10000 perm   2 sec   (4477 perm/sec)   p_kst 9.204000e-01   p_cons 1.081000e-01   p_joint 3.643000e-01

Joint ci ratio: 3.063525e-02	ci left: 4.431878e-01	ci right 4.570268e-01	k: 9002	n:20000
Cons ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
KS ci ratio: 8.971662e-03	ci left: 9.010560e-01	ci right 9.092257e-01	k: 18104	n:20000
HCFC1   20000 perm   5 sec   (4078 perm/sec)   p_kst 9.052000e-01   p_cons 1.035500e-01   p_joint 4.501000e-01

Outputting figure to mutsig2_images.part000000000077/HCFC1.10_6212_20000_0.9052_0.10355_0.4501.png
                gene_name: HCFC1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 21 percent done.
HDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
Cons ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
KS ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
HDX   10000 perm   2 sec   (5480 perm/sec)   p_kst 8.430000e-02   p_cons 6.562000e-01   p_joint 1.728000e-01

Joint ci ratio: 6.831624e-02	ci left: 1.364999e-01	ci right 1.462047e-01	k: 2826	n:20000
Cons ci ratio: 1.994718e-02	ci left: 6.521815e-01	ci right 6.653723e-01	k: 13176	n:20000
KS ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
HDX   20000 perm   4 sec   (4978 perm/sec)   p_kst 7.960000e-02   p_cons 6.588000e-01   p_joint 1.413000e-01

Outputting figure to mutsig2_images.part000000000077/HDX.10_2109_20000_0.0796_0.6588_0.1413.png
                gene_name: HDX
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 23 percent done.
HEATR5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
Cons ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
HEATR5B   10000 perm   2 sec   (4385 perm/sec)   p_kst 3.462000e-01   p_cons 2.791000e-01   p_joint 5.357000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5B.9_6356_10000_0.3462_0.2791_0.5357.png
                gene_name: HEATR5B
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 25 percent done.
HEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
Cons ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
HEG1   10000 perm   2 sec   (4607 perm/sec)   p_kst 8.080000e-02   p_cons 7.800000e-01   p_joint 1.768000e-01

Joint ci ratio: 6.486688e-02	ci left: 1.493685e-01	ci right 1.594322e-01	k: 3087	n:20000
Cons ci ratio: 1.487317e-02	ci left: 7.706110e-01	ci right 7.822085e-01	k: 15529	n:20000
KS ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
HEG1   20000 perm   5 sec   (4299 perm/sec)   p_kst 7.680000e-02   p_cons 7.764500e-01   p_joint 1.543500e-01

Outputting figure to mutsig2_images.part000000000077/HEG1.9_4214_20000_0.0768_0.77645_0.15435.png
                gene_name: HEG1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 26 percent done.
HELZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
Cons ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
KS ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
HELZ   10000 perm   2 sec   (4503 perm/sec)   p_kst 6.180000e-01   p_cons 8.790000e-01   p_joint 8.371000e-01

Outputting figure to mutsig2_images.part000000000077/HELZ.9_5949_10000_0.618_0.879_0.8371.png
                gene_name: HELZ
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 28 percent done.
HERC1
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
Cons ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
KS ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
HERC1   10000 perm   3 sec   (3046 perm/sec)   p_kst 7.935000e-01   p_cons 1.427000e-01   p_joint 4.763000e-01

Outputting figure to mutsig2_images.part000000000077/HERC1.9_14894_10000_0.7935_0.1427_0.4763.png
                gene_name: HERC1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
HCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
Cons ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
KS ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
HCK   10000 perm   2 sec   (5537 perm/sec)   p_kst 5.600000e-02   p_cons 2.182000e-01   p_joint 7.820000e-02

Joint ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
Cons ci ratio: 5.314522e-02	ci left: 2.081349e-01	ci right 2.195484e-01	k: 4276	n:20000
KS ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
HCK   20000 perm   4 sec   (5043 perm/sec)   p_kst 5.580000e-02   p_cons 2.138000e-01   p_joint 9.695000e-02

Joint ci ratio: 5.442357e-02	ci left: 1.434061e-01	ci right 1.514623e-01	k: 4422	n:30000
Cons ci ratio: 4.343827e-02	ci left: 2.088412e-01	ci right 2.181477e-01	k: 6404	n:30000
KS ci ratio: 9.280342e-02	ci left: 5.352247e-02	ci right 5.876390e-02	k: 1683	n:30000
HCK   30000 perm   6 sec   (4835 perm/sec)   p_kst 5.610000e-02   p_cons 2.134667e-01   p_joint 1.474000e-01

Outputting figure to mutsig2_images.part000000000077/HCK.8_1639_30000_0.0561_0.21347_0.1474.png
                gene_name: HCK
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
HDAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
HDAC2   10000 perm   2 sec   (6134 perm/sec)   p_kst 4.225000e-01   p_cons 9.430000e-02   p_joint 2.117000e-01

Joint ci ratio: 5.050963e-02	ci left: 2.255696e-01	ci right 2.373085e-01	k: 4628	n:20000
Cons ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
KS ci ratio: 3.142397e-02	ci left: 4.306592e-01	ci right 4.444589e-01	k: 8751	n:20000
HDAC2   20000 perm   4 sec   (5523 perm/sec)   p_kst 4.375500e-01   p_cons 9.425000e-02   p_joint 2.314000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC2.8_1523_20000_0.43755_0.09425_0.2314.png
                gene_name: HDAC2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 33 percent done.
HECTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
Cons ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
HECTD3   10000 perm   2 sec   (5694 perm/sec)   p_kst 8.013000e-01   p_cons 5.265000e-01   p_joint 8.677000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD3.8_2670_10000_0.8013_0.5265_0.8677.png
                gene_name: HECTD3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 35 percent done.
HDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.212254e-02	ci left: 1.461923e-01	ci right 1.604103e-01	k: 1532	n:10000
Cons ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
HDC   10000 perm   2 sec   (5695 perm/sec)   p_kst 8.283000e-01   p_cons 3.550000e-02   p_joint 1.532000e-01

Joint ci ratio: 8.452258e-02	ci left: 9.298115e-02	ci right 1.012364e-01	k: 1941	n:20000
Cons ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
KS ci ratio: 1.256289e-02	ci left: 8.243164e-01	ci right 8.347876e-01	k: 16592	n:20000
HDC   20000 perm   4 sec   (5153 perm/sec)   p_kst 8.296000e-01   p_cons 3.380000e-02   p_joint 9.705000e-02

Joint ci ratio: 5.379733e-02	ci left: 1.463064e-01	ci right 1.544281e-01	k: 4510	n:30000
Cons ci ratio: 1.196653e-01	ci left: 3.246326e-02	ci right 3.662751e-02	k: 1035	n:30000
KS ci ratio: 1.031178e-02	ci left: 8.237822e-01	ci right 8.323541e-01	k: 24843	n:30000
HDC   30000 perm   6 sec   (4950 perm/sec)   p_kst 8.281000e-01   p_cons 3.450000e-02   p_joint 1.503333e-01

Joint ci ratio: 5.411307e-02	ci left: 1.128279e-01	ci right 1.191280e-01	k: 4638	n:40000
Cons ci ratio: 1.009156e-01	ci left: 3.451270e-02	ci right 3.820500e-02	k: 1453	n:40000
KS ci ratio: 8.903532e-03	ci left: 8.252235e-01	ci right 8.326287e-01	k: 33158	n:40000
HDC   40000 perm   8 sec   (4821 perm/sec)   p_kst 8.289500e-01   p_cons 3.632500e-02   p_joint 1.159500e-01

Joint ci ratio: 4.961708e-02	ci left: 1.082196e-01	ci right 1.137456e-01	k: 5548	n:50000
Cons ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
KS ci ratio: 8.037830e-03	ci left: 8.229504e-01	ci right 8.296117e-01	k: 41315	n:50000
HDC   50000 perm   11 sec   (4718 perm/sec)   p_kst 8.263000e-01   p_cons 3.712000e-02   p_joint 1.109600e-01

Outputting figure to mutsig2_images.part000000000077/HDC.7_2037_50000_0.8263_0.03712_0.11096.png
                gene_name: HDC
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 37 percent done.
HEMGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
Cons ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
KS ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
HEMGN   10000 perm   2 sec   (5761 perm/sec)   p_kst 7.905000e-01   p_cons 8.091000e-01   p_joint 9.533000e-01

Outputting figure to mutsig2_images.part000000000077/HEMGN.7_1471_10000_0.7905_0.8091_0.9533.png
                gene_name: HEMGN
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 39 percent done.
HCLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
Cons ci ratio: 2.289119e-02	ci left: 7.370442e-01	ci right 7.542125e-01	k: 7457	n:10000
KS ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
HCLS1   10000 perm   2 sec   (6573 perm/sec)   p_kst 2.453000e-01   p_cons 7.457000e-01   p_joint 3.660000e-01

Outputting figure to mutsig2_images.part000000000077/HCLS1.6_1513_10000_0.2453_0.7457_0.366.png
                gene_name: HCLS1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 40 percent done.
HECTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
Cons ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
KS ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
HECTD2   10000 perm   2 sec   (5302 perm/sec)   p_kst 2.781000e-01   p_cons 5.241000e-01   p_joint 4.707000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD2.6_2439_10000_0.2781_0.5241_0.4707.png
                gene_name: HECTD2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 42 percent done.
HELQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
Cons ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
KS ci ratio: 2.619972e-02	ci left: 6.820403e-01	ci right 7.002483e-01	k: 6912	n:10000
HELQ   10000 perm   2 sec   (5575 perm/sec)   p_kst 6.912000e-01   p_cons 5.427000e-01   p_joint 8.333000e-01

Outputting figure to mutsig2_images.part000000000077/HELQ.6_3378_10000_0.6912_0.5427_0.8333.png
                gene_name: HELQ
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 44 percent done.
HEPACAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
Cons ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
HEPACAM2   10000 perm   2 sec   (5912 perm/sec)   p_kst 2.492000e-01   p_cons 3.016000e-01   p_joint 2.323000e-01

Outputting figure to mutsig2_images.part000000000077/HEPACAM2.6_1472_10000_0.2492_0.3016_0.2323.png
                gene_name: HEPACAM2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 46 percent done.
HAUS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
Cons ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
KS ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
HAUS3   10000 perm   2 sec   (5873 perm/sec)   p_kst 7.938000e-01   p_cons 6.000000e-02   p_joint 2.528000e-01

Joint ci ratio: 5.316894e-02	ci left: 2.079864e-01	ci right 2.193970e-01	k: 4273	n:20000
Cons ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
KS ci ratio: 1.472745e-02	ci left: 7.740421e-01	ci right 7.855765e-01	k: 15597	n:20000
HAUS3   20000 perm   4 sec   (5232 perm/sec)   p_kst 7.798500e-01   p_cons 6.045000e-02   p_joint 2.136500e-01

Joint ci ratio: 4.663316e-02	ci left: 1.861689e-01	ci right 1.950911e-01	k: 5718	n:30000
Cons ci ratio: 9.199587e-02	ci left: 5.443544e-02	ci right 5.971741e-02	k: 1711	n:30000
KS ci ratio: 1.244724e-02	ci left: 7.629460e-01	ci right 7.725354e-01	k: 23033	n:30000
HAUS3   30000 perm   6 sec   (5075 perm/sec)   p_kst 7.677667e-01   p_cons 5.703333e-02   p_joint 1.906000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS3.5_1828_30000_0.76777_0.057033_0.1906.png
                gene_name: HAUS3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 47 percent done.
HAUS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
Cons ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
KS ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
HAUS7   10000 perm   2 sec   (6465 perm/sec)   p_kst 6.488000e-01   p_cons 7.950000e-02   p_joint 3.018000e-01

Joint ci ratio: 4.475906e-02	ci left: 2.709546e-01	ci right 2.834103e-01	k: 5543	n:20000
Cons ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
KS ci ratio: 2.027872e-02	ci left: 6.446989e-01	ci right 6.579570e-01	k: 13027	n:20000
HAUS7   20000 perm   3 sec   (5821 perm/sec)   p_kst 6.513500e-01   p_cons 8.550000e-02   p_joint 2.771500e-01

Outputting figure to mutsig2_images.part000000000077/HAUS7.5_1147_20000_0.65135_0.0855_0.27715.png
                gene_name: HAUS7
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 49 percent done.
HAVCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
Cons ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
KS ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
HAVCR1   10000 perm   2 sec   (6443 perm/sec)   p_kst 2.700000e-01   p_cons 4.658000e-01   p_joint 3.568000e-01

Outputting figure to mutsig2_images.part000000000077/HAVCR1.5_1127_10000_0.27_0.4658_0.3568.png
                gene_name: HAVCR1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 51 percent done.
HCFC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
HCFC2   10000 perm   2 sec   (5665 perm/sec)   p_kst 4.338000e-01   p_cons 2.541000e-01   p_joint 3.770000e-01

Outputting figure to mutsig2_images.part000000000077/HCFC2.5_2439_10000_0.4338_0.2541_0.377.png
                gene_name: HCFC2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
HCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
KS ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
HCN4   10000 perm   2 sec   (5455 perm/sec)   p_kst 1.100000e-02   p_cons 1.134000e-01   p_joint 4.270000e-02

Joint ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
Cons ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
KS ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
HCN4   20000 perm   4 sec   (4991 perm/sec)   p_kst 1.070000e-02   p_cons 1.105500e-01   p_joint 2.205000e-02

Joint ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
Cons ci ratio: 6.434235e-02	ci left: 1.065463e-01	ci right 1.136627e-01	k: 3302	n:30000
KS ci ratio: 2.145953e-01	ci left: 9.819042e-03	ci right 1.221040e-02	k: 329	n:30000
HCN4   30000 perm   6 sec   (4803 perm/sec)   p_kst 1.096667e-02   p_cons 1.100667e-01   p_joint 1.446667e-02

Joint ci ratio: 1.295554e-01	ci left: 2.092365e-02	ci right 2.384626e-02	k: 894	n:40000
Cons ci ratio: 5.565131e-02	ci left: 1.072706e-01	ci right 1.134361e-01	k: 4413	n:40000
KS ci ratio: 1.873585e-01	ci left: 9.810223e-03	ci right 1.186172e-02	k: 432	n:40000
HCN4   40000 perm   9 sec   (4673 perm/sec)   p_kst 1.080000e-02   p_cons 1.103250e-01   p_joint 2.235000e-02

Joint ci ratio: 9.941030e-02	ci left: 2.865872e-02	ci right 3.167616e-02	k: 1507	n:50000
Cons ci ratio: 4.983962e-02	ci left: 1.073493e-01	ci right 1.128561e-01	k: 5504	n:50000
KS ci ratio: 1.684066e-01	ci left: 9.816677e-03	ci right 1.164080e-02	k: 535	n:50000
HCN4   50000 perm   11 sec   (4566 perm/sec)   p_kst 1.070000e-02   p_cons 1.100800e-01   p_joint 3.014000e-02

Joint ci ratio: 9.157664e-02	ci left: 2.827465e-02	ci right 3.100444e-02	k: 1777	n:60000
Cons ci ratio: 4.542768e-02	ci left: 1.078865e-01	ci right 1.129179e-01	k: 6623	n:60000
KS ci ratio: 1.544881e-01	ci left: 9.795976e-03	ci right 1.145187e-02	k: 636	n:60000
HCN4   60000 perm   13 sec   (4474 perm/sec)   p_kst 1.060000e-02   p_cons 1.103833e-01   p_joint 2.961667e-02

Joint ci ratio: 8.670490e-02	ci left: 2.713992e-02	ci right 2.961366e-02	k: 1985	n:70000
Cons ci ratio: 4.219921e-02	ci left: 1.074223e-01	ci right 1.120673e-01	k: 7681	n:70000
KS ci ratio: 1.418910e-01	ci left: 1.001993e-02	ci right 1.156388e-02	k: 754	n:70000
HCN4   70000 perm   16 sec   (4389 perm/sec)   p_kst 1.077143e-02   p_cons 1.097286e-01   p_joint 2.835714e-02

Joint ci ratio: 8.005331e-02	ci left: 2.793383e-02	ci right 3.027548e-02	k: 2327	n:80000
Cons ci ratio: 3.936664e-02	ci left: 1.081000e-01	ci right 1.124533e-01	k: 8821	n:80000
KS ci ratio: 1.331847e-01	ci left: 9.998587e-03	ci right 1.143723e-02	k: 856	n:80000
HCN4   80000 perm   19 sec   (4315 perm/sec)   p_kst 1.070000e-02   p_cons 1.102625e-01   p_joint 2.908750e-02

Joint ci ratio: 7.667441e-02	ci left: 2.713904e-02	ci right 2.931373e-02	k: 2539	n:90000
Cons ci ratio: 3.708114e-02	ci left: 1.084037e-01	ci right 1.125104e-01	k: 9940	n:90000
KS ci ratio: 1.261727e-01	ci left: 9.941193e-03	ci right 1.129063e-02	k: 954	n:90000
HCN4   90000 perm   21 sec   (4255 perm/sec)   p_kst 1.060000e-02   p_cons 1.104444e-01   p_joint 2.821111e-02

Joint ci ratio: 7.425935e-02	ci left: 2.610234e-02	ci right 2.812521e-02	k: 2710	n:100000
Cons ci ratio: 3.517389e-02	ci left: 1.085334e-01	ci right 1.124292e-01	k: 11047	n:100000
KS ci ratio: 1.189139e-01	ci left: 1.011036e-02	ci right 1.139825e-02	k: 1074	n:100000
HCN4   100000 perm   24 sec   (4181 perm/sec)   p_kst 1.074000e-02   p_cons 1.104700e-01   p_joint 2.710000e-02

Joint ci ratio: 7.317203e-02	ci left: 2.449606e-02	ci right 2.636544e-02	k: 2796	n:110000
Cons ci ratio: 3.353980e-02	ci left: 1.086079e-01	ci right 1.123217e-01	k: 12150	n:110000
KS ci ratio: 1.126362e-01	ci left: 1.027710e-02	ci right 1.151253e-02	k: 1197	n:110000
HCN4   110000 perm   27 sec   (4068 perm/sec)   p_kst 1.088182e-02   p_cons 1.104545e-01   p_joint 2.541818e-02

Joint ci ratio: 8.319074e-02	ci left: 1.741036e-02	ci right 1.892972e-02	k: 2179	n:120000
Cons ci ratio: 3.122843e-02	ci left: 1.142513e-01	ci right 1.178840e-01	k: 13927	n:120000
KS ci ratio: 1.038159e-01	ci left: 1.113172e-02	ci right 1.235871e-02	k: 1408	n:120000
HCN4   120000 perm   30 sec   (4011 perm/sec)   p_kst 1.173333e-02   p_cons 1.160583e-01   p_joint 1.815833e-02

Joint ci ratio: 6.790686e-02	ci left: 2.414294e-02	ci right 2.584757e-02	k: 3248	n:130000
Cons ci ratio: 2.995915e-02	ci left: 1.146232e-01	ci right 1.181170e-01	k: 15127	n:130000
KS ci ratio: 1.000226e-01	ci left: 1.109252e-02	ci right 1.226788e-02	k: 1517	n:130000
HCN4   130000 perm   33 sec   (3958 perm/sec)   p_kst 1.166923e-02   p_cons 1.163615e-01   p_joint 2.498462e-02

Joint ci ratio: 6.909871e-02	ci left: 2.169437e-02	ci right 2.325406e-02	k: 3145	n:140000
Cons ci ratio: 2.888210e-02	ci left: 1.145967e-01	ci right 1.179621e-01	k: 16278	n:140000
KS ci ratio: 9.616922e-02	ci left: 1.116420e-02	ci right 1.229901e-02	k: 1641	n:140000
HCN4   140000 perm   36 sec   (3906 perm/sec)   p_kst 1.172143e-02   p_cons 1.162714e-01   p_joint 2.246429e-02

Outputting figure to mutsig2_images.part000000000077/HCN4.5_3644_140000_0.011721_0.11627_0.022464.png
                gene_name: HCN4
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 54 percent done.
HDAC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
KS ci ratio: 2.112780e-02	ci left: 7.665848e-01	ci right 7.830548e-01	k: 7749	n:10000
HDAC6   10000 perm   2 sec   (4981 perm/sec)   p_kst 7.749000e-01   p_cons 7.063000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HDAC6.5_3760_10000_0.7749_0.7063_1.png
                gene_name: HDAC6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
HDLBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
Cons ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
KS ci ratio: 2.061251e-02	ci left: 7.751944e-01	ci right 7.914402e-01	k: 7834	n:10000
HDLBP   10000 perm   2 sec   (5167 perm/sec)   p_kst 7.834000e-01   p_cons 2.654000e-01   p_joint 5.993000e-01

Outputting figure to mutsig2_images.part000000000077/HDLBP.5_3911_10000_0.7834_0.2654_0.5993.png
                gene_name: HDLBP
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 58 percent done.
HELB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
HELB   10000 perm   2 sec   (5315 perm/sec)   p_kst 9.318000e-01   p_cons 3.420000e-01   p_joint 7.183000e-01

Outputting figure to mutsig2_images.part000000000077/HELB.5_3316_10000_0.9318_0.342_0.7183.png
                gene_name: HELB
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 60 percent done.
HAUS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
HAUS6   10000 perm   2 sec   (5784 perm/sec)   p_kst 8.520000e-01   p_cons 3.174000e-01   p_joint 6.123000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS6.4_2936_10000_0.852_0.3174_0.6123.png
                gene_name: HAUS6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 61 percent done.
HAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
HAX1   10000 perm   2 sec   (6126 perm/sec)   p_kst 8.660000e-02   p_cons 2.900000e-03   p_joint 0

Joint ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
Cons ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
KS ci ratio: 8.720915e-02	ci left: 8.773481e-02	ci right 9.578433e-02	k: 1834	n:20000
HAX1   20000 perm   4 sec   (5695 perm/sec)   p_kst 9.170000e-02   p_cons 3.200000e-03   p_joint 5.800000e-03

Joint ci ratio: 3.893910e-01	ci left: 2.712931e-03	ci right 4.052764e-03	k: 100	n:30000
Cons ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
KS ci ratio: 7.154321e-02	ci left: 8.770292e-02	ci right 9.424321e-02	k: 2728	n:30000
HAX1   30000 perm   5 sec   (5471 perm/sec)   p_kst 9.093333e-02   p_cons 3.200000e-03   p_joint 3.333333e-03

Joint ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
Cons ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
KS ci ratio: 6.206797e-02	ci left: 8.785365e-02	ci right 9.350593e-02	k: 3626	n:40000
HAX1   40000 perm   8 sec   (5324 perm/sec)   p_kst 9.065000e-02   p_cons 3.200000e-03   p_joint 1.925000e-03

Joint ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
Cons ci ratio: 3.113622e-01	ci left: 2.668646e-03	ci right 3.670412e-03	k: 157	n:50000
KS ci ratio: 5.599032e-02	ci left: 8.677477e-02	ci right 9.179304e-02	k: 4463	n:50000
HAX1   50000 perm   10 sec   (5195 perm/sec)   p_kst 8.926000e-02   p_cons 3.140000e-03   p_joint 2.340000e-03

Joint ci ratio: 3.516595e-01	ci left: 1.704031e-03	ci right 2.445456e-03	k: 123	n:60000
Cons ci ratio: 3.124379e-01	ci left: 2.208423e-03	ci right 3.040850e-03	k: 156	n:60000
KS ci ratio: 5.096484e-02	ci left: 8.745805e-02	ci right 9.204839e-02	k: 5384	n:60000
HAX1   60000 perm   12 sec   (5079 perm/sec)   p_kst 8.973333e-02   p_cons 2.600000e-03   p_joint 2.050000e-03

Joint ci ratio: 3.840992e-01	ci left: 1.201182e-03	ci right 1.784256e-03	k: 103	n:70000
Cons ci ratio: 2.870442e-01	ci left: 2.276131e-03	ci right 3.051725e-03	k: 185	n:70000
KS ci ratio: 4.735635e-02	ci left: 8.704187e-02	ci right 9.127797e-02	k: 6240	n:70000
HAX1   70000 perm   14 sec   (4975 perm/sec)   p_kst 8.914286e-02   p_cons 2.642857e-03   p_joint 1.471429e-03

Joint ci ratio: 2.500543e-01	ci left: 2.679759e-03	ci right 3.456972e-03	k: 244	n:80000
Cons ci ratio: 2.621349e-01	ci left: 2.422357e-03	ci right 3.164430e-03	k: 222	n:80000
KS ci ratio: 4.387892e-02	ci left: 8.871858e-02	ci right 9.271116e-02	k: 7256	n:80000
HAX1   80000 perm   16 sec   (4881 perm/sec)   p_kst 9.070000e-02   p_cons 2.775000e-03   p_joint 3.050000e-03

Joint ci ratio: 2.318315e-01	ci left: 2.799675e-03	ci right 3.544029e-03	k: 284	n:90000
Cons ci ratio: 2.490798e-01	ci left: 2.402796e-03	ci right 3.096539e-03	k: 246	n:90000
KS ci ratio: 4.077388e-02	ci left: 9.123123e-02	ci right 9.503949e-02	k: 8381	n:90000
HAX1   90000 perm   19 sec   (4802 perm/sec)   p_kst 9.312222e-02   p_cons 2.733333e-03   p_joint 3.155556e-03

Joint ci ratio: 2.481092e-01	ci left: 2.181238e-03	ci right 2.808175e-03	k: 248	n:100000
Cons ci ratio: 2.373603e-01	ci left: 2.397286e-03	ci right 3.052087e-03	k: 271	n:100000
KS ci ratio: 3.857959e-02	ci left: 9.177178e-02	ci right 9.539183e-02	k: 9357	n:100000
HAX1   100000 perm   21 sec   (4718 perm/sec)   p_kst 9.357000e-02   p_cons 2.710000e-03   p_joint 2.480000e-03

Joint ci ratio: 2.670792e-01	ci left: 1.693722e-03	ci right 2.223997e-03	k: 214	n:110000
Cons ci ratio: 2.248867e-01	ci left: 2.444869e-03	ci right 3.072714e-03	k: 302	n:110000
KS ci ratio: 3.676805e-02	ci left: 9.192999e-02	ci right 9.538238e-02	k: 10301	n:110000
HAX1   110000 perm   24 sec   (4638 perm/sec)   p_kst 9.364545e-02   p_cons 2.745455e-03   p_joint 1.945455e-03

Joint ci ratio: 2.549182e-01	ci left: 1.716138e-03	ci right 2.225080e-03	k: 235	n:120000
Cons ci ratio: 2.132351e-01	ci left: 2.508935e-03	ci right 3.115489e-03	k: 336	n:120000
KS ci ratio: 3.521060e-02	ci left: 9.196594e-02	ci right 9.527039e-02	k: 11233	n:120000
HAX1   120000 perm   26 sec   (4560 perm/sec)   p_kst 9.360833e-02   p_cons 2.800000e-03   p_joint 1.958333e-03

Joint ci ratio: 2.447577e-01	ci left: 1.728345e-03	ci right 2.217374e-03	k: 255	n:130000
Cons ci ratio: 2.083563e-01	ci left: 2.432510e-03	ci right 3.005415e-03	k: 352	n:130000
KS ci ratio: 3.379888e-02	ci left: 9.218220e-02	ci right 9.535902e-02	k: 12189	n:130000
HAX1   130000 perm   29 sec   (4484 perm/sec)   p_kst 9.376154e-02   p_cons 2.707692e-03   p_joint 1.961538e-03

Joint ci ratio: 2.142361e-01	ci left: 2.130189e-03	ci right 2.647908e-03	k: 333	n:140000
Cons ci ratio: 2.000278e-01	ci left: 2.462096e-03	ci right 3.015962e-03	k: 382	n:140000
KS ci ratio: 3.263212e-02	ci left: 9.191603e-02	ci right 9.497226e-02	k: 13081	n:140000
HAX1   140000 perm   32 sec   (4406 perm/sec)   p_kst 9.343571e-02   p_cons 2.728571e-03   p_joint 2.378571e-03

Joint ci ratio: 2.083942e-01	ci left: 2.108138e-03	ci right 2.604745e-03	k: 352	n:150000
Cons ci ratio: 1.938042e-01	ci left: 2.456406e-03	ci right 2.989771e-03	k: 407	n:150000
KS ci ratio: 3.152492e-02	ci left: 9.197166e-02	ci right 9.492408e-02	k: 14016	n:150000
HAX1   150000 perm   35 sec   (4340 perm/sec)   p_kst 9.344000e-02   p_cons 2.713333e-03   p_joint 2.346667e-03

Joint ci ratio: 2.096032e-01	ci left: 1.952671e-03	ci right 2.415664e-03	k: 348	n:160000
Cons ci ratio: 1.872622e-01	ci left: 2.475489e-03	ci right 2.992792e-03	k: 436	n:160000
KS ci ratio: 3.052328e-02	ci left: 9.202187e-02	ci right 9.488039e-02	k: 14951	n:160000
HAX1   160000 perm   37 sec   (4276 perm/sec)   p_kst 9.344375e-02   p_cons 2.725000e-03   p_joint 2.175000e-03

Joint ci ratio: 2.397109e-01	ci left: 1.382424e-03	ci right 1.764309e-03	k: 266	n:170000
Cons ci ratio: 1.823244e-01	ci left: 2.464517e-03	ci right 2.964447e-03	k: 460	n:170000
KS ci ratio: 2.968051e-02	ci left: 9.167599e-02	ci right 9.444379e-02	k: 15819	n:170000
HAX1   170000 perm   40 sec   (4211 perm/sec)   p_kst 9.305294e-02   p_cons 2.705882e-03   p_joint 1.564706e-03

Joint ci ratio: 2.328359e-01	ci left: 1.389251e-03	ci right 1.760431e-03	k: 282	n:180000
Cons ci ratio: 1.773912e-01	ci left: 2.465542e-03	ci right 2.950695e-03	k: 486	n:180000
KS ci ratio: 2.882965e-02	ci left: 9.180007e-02	ci right 9.449083e-02	k: 16765	n:180000
HAX1   180000 perm   43 sec   (4149 perm/sec)   p_kst 9.313889e-02   p_cons 2.700000e-03   p_joint 1.566667e-03

Joint ci ratio: 2.316193e-01	ci left: 1.330999e-03	ci right 1.684490e-03	k: 285	n:190000
Cons ci ratio: 1.730071e-01	ci left: 2.461585e-03	ci right 2.932739e-03	k: 511	n:190000
KS ci ratio: 2.806024e-02	ci left: 9.183887e-02	ci right 9.445777e-02	k: 17697	n:190000
HAX1   190000 perm   46 sec   (4087 perm/sec)   p_kst 9.314211e-02   p_cons 2.689474e-03   p_joint 1.500000e-03

Joint ci ratio: 1.625325e-01	ci left: 2.664265e-03	ci right 3.140324e-03	k: 579	n:200000
Cons ci ratio: 1.676850e-01	ci left: 2.496476e-03	ci right 2.958124e-03	k: 544	n:200000
KS ci ratio: 2.736957e-02	ci left: 9.175043e-02	ci right 9.430138e-02	k: 18604	n:200000
HAX1   200000 perm   50 sec   (4029 perm/sec)   p_kst 9.302000e-02   p_cons 2.720000e-03   p_joint 2.895000e-03

Joint ci ratio: 1.626845e-01	ci left: 2.532813e-03	ci right 2.985848e-03	k: 578	n:210000
Cons ci ratio: 1.635364e-01	ci left: 2.505405e-03	ci right 2.956115e-03	k: 572	n:210000
KS ci ratio: 2.669961e-02	ci left: 9.184626e-02	ci right 9.433641e-02	k: 19548	n:210000
HAX1   210000 perm   53 sec   (3972 perm/sec)   p_kst 9.308571e-02   p_cons 2.723810e-03   p_joint 2.752381e-03

Joint ci ratio: 1.804302e-01	ci left: 1.947743e-03	ci right 2.338287e-03	k: 470	n:220000
Cons ci ratio: 1.606219e-01	ci left: 2.483103e-03	ci right 2.921072e-03	k: 593	n:220000
KS ci ratio: 2.608147e-02	ci left: 9.190245e-02	ci right 9.433556e-02	k: 20485	n:220000
HAX1   220000 perm   56 sec   (3923 perm/sec)   p_kst 9.311364e-02   p_cons 2.695455e-03   p_joint 2.136364e-03

Joint ci ratio: 1.774436e-01	ci left: 1.929506e-03	ci right 2.309303e-03	k: 486	n:230000
Cons ci ratio: 1.569647e-01	ci left: 2.492045e-03	ci right 2.920640e-03	k: 621	n:230000
KS ci ratio: 2.550042e-02	ci left: 9.198029e-02	ci right 9.436041e-02	k: 21428	n:230000
HAX1   230000 perm   59 sec   (3869 perm/sec)   p_kst 9.316522e-02   p_cons 2.700000e-03   p_joint 2.113043e-03

Joint ci ratio: 1.723824e-01	ci left: 1.964657e-03	ci right 2.339195e-03	k: 515	n:240000
Cons ci ratio: 1.535464e-01	ci left: 2.500345e-03	ci right 2.920141e-03	k: 649	n:240000
KS ci ratio: 2.496517e-02	ci left: 9.199419e-02	ci right 9.432398e-02	k: 22357	n:240000
HAX1   240000 perm   63 sec   (3807 perm/sec)   p_kst 9.315417e-02   p_cons 2.704167e-03   p_joint 2.145833e-03

Joint ci ratio: 1.725575e-01	ci left: 1.882237e-03	ci right 2.241464e-03	k: 514	n:250000
Cons ci ratio: 1.509011e-01	ci left: 2.488826e-03	ci right 2.898839e-03	k: 672	n:250000
KS ci ratio: 2.445822e-02	ci left: 9.203530e-02	ci right 9.431814e-02	k: 23293	n:250000
HAX1   250000 perm   67 sec   (3754 perm/sec)   p_kst 9.317200e-02   p_cons 2.688000e-03   p_joint 2.056000e-03

Joint ci ratio: 1.680472e-01	ci left: 1.912948e-03	ci right 2.267529e-03	k: 542	n:260000
Cons ci ratio: 1.478563e-01	ci left: 2.496770e-03	ci right 2.899059e-03	k: 700	n:260000
KS ci ratio: 2.399460e-02	ci left: 9.197806e-02	ci right 9.421563e-02	k: 24204	n:260000
HAX1   260000 perm   70 sec   (3700 perm/sec)   p_kst 9.309231e-02   p_cons 2.692308e-03   p_joint 2.084615e-03

Joint ci ratio: 1.672838e-01	ci left: 1.859835e-03	ci right 2.202847e-03	k: 547	n:270000
Cons ci ratio: 1.443942e-01	ci left: 2.525622e-03	ci right 2.922209e-03	k: 734	n:270000
KS ci ratio: 2.357190e-02	ci left: 9.181492e-02	ci right 9.400864e-02	k: 25085	n:270000
HAX1   270000 perm   74 sec   (3647 perm/sec)   p_kst 9.290741e-02   p_cons 2.718519e-03   p_joint 2.025926e-03

Joint ci ratio: 1.640232e-01	ci left: 1.868727e-03	ci right 2.205998e-03	k: 569	n:280000
Cons ci ratio: 1.408890e-01	ci left: 2.562852e-03	ci right 2.954696e-03	k: 771	n:280000
KS ci ratio: 2.313201e-02	ci left: 9.194444e-02	ci right 9.409971e-02	k: 26045	n:280000
HAX1   280000 perm   78 sec   (3598 perm/sec)   p_kst 9.301786e-02   p_cons 2.753571e-03   p_joint 2.032143e-03

Joint ci ratio: 1.617697e-01	ci left: 1.857211e-03	ci right 2.187350e-03	k: 585	n:290000
Cons ci ratio: 1.383147e-01	ci left: 2.570985e-03	ci right 2.956300e-03	k: 800	n:290000
KS ci ratio: 2.274094e-02	ci left: 9.188012e-02	ci right 9.399699e-02	k: 26951	n:290000
HAX1   290000 perm   82 sec   (3552 perm/sec)   p_kst 9.293448e-02   p_cons 2.758621e-03   p_joint 2.017241e-03

Joint ci ratio: 1.608157e-01	ci left: 1.817692e-03	ci right 2.138717e-03	k: 592	n:300000
Cons ci ratio: 1.362061e-01	ci left: 2.565757e-03	ci right 2.943950e-03	k: 825	n:300000
KS ci ratio: 2.236375e-02	ci left: 9.186017e-02	ci right 9.394103e-02	k: 27869	n:300000
HAX1   300000 perm   86 sec   (3505 perm/sec)   p_kst 9.289667e-02   p_cons 2.750000e-03   p_joint 1.973333e-03

Joint ci ratio: 1.580413e-01	ci left: 1.824097e-03	ci right 2.140168e-03	k: 613	n:310000
Cons ci ratio: 1.344289e-01	ci left: 2.551555e-03	ci right 2.922354e-03	k: 847	n:310000
KS ci ratio: 2.200641e-02	ci left: 9.182895e-02	ci right 9.387544e-02	k: 28783	n:310000
HAX1   310000 perm   90 sec   (3460 perm/sec)   p_kst 9.284839e-02   p_cons 2.732258e-03   p_joint 1.977419e-03

Joint ci ratio: 1.571512e-01	ci left: 1.788104e-03	ci right 2.096028e-03	k: 620	n:320000
Cons ci ratio: 1.325668e-01	ci left: 2.544313e-03	ci right 2.908535e-03	k: 871	n:320000
KS ci ratio: 2.165000e-02	ci left: 9.192121e-02	ci right 9.393617e-02	k: 29736	n:320000
HAX1   320000 perm   94 sec   (3416 perm/sec)   p_kst 9.292500e-02   p_cons 2.721875e-03   p_joint 1.937500e-03

Joint ci ratio: 1.619281e-01	ci left: 1.629171e-03	ci right 1.919084e-03	k: 584	n:330000
Cons ci ratio: 1.208388e-01	ci left: 2.986651e-03	ci right 3.373670e-03	k: 1048	n:330000
KS ci ratio: 2.130921e-02	ci left: 9.201718e-02	ci right 9.400210e-02	k: 30692	n:330000
HAX1   330000 perm   98 sec   (3374 perm/sec)   p_kst 9.300606e-02   p_cons 3.175758e-03   p_joint 1.769697e-03

Joint ci ratio: 1.637653e-01	ci left: 1.544572e-03	ci right 1.822855e-03	k: 571	n:340000
Cons ci ratio: 1.191474e-01	ci left: 2.984395e-03	ci right 3.365327e-03	k: 1078	n:340000
KS ci ratio: 2.100745e-02	ci left: 9.192038e-02	ci right 9.387480e-02	k: 31584	n:340000
HAX1   340000 perm   102 sec   (3333 perm/sec)   p_kst 9.289412e-02   p_cons 3.170588e-03   p_joint 1.679412e-03

Joint ci ratio: 1.650751e-01	ci left: 1.475781e-03	ci right 1.744008e-03	k: 562	n:350000
Cons ci ratio: 1.172074e-01	ci left: 2.998944e-03	ci right 3.375070e-03	k: 1114	n:350000
KS ci ratio: 2.069674e-02	ci left: 9.200279e-02	ci right 9.392967e-02	k: 32537	n:350000
HAX1   350000 perm   106 sec   (3294 perm/sec)   p_kst 9.296286e-02   p_cons 3.182857e-03   p_joint 1.605714e-03

Joint ci ratio: 1.805056e-01	ci left: 1.190245e-03	ci right 1.429010e-03	k: 470	n:360000
Cons ci ratio: 1.154599e-01	ci left: 3.007337e-03	ci right 3.378509e-03	k: 1148	n:360000
KS ci ratio: 2.040748e-02	ci left: 9.201445e-02	ci right 9.391433e-02	k: 33466	n:360000
HAX1   360000 perm   111 sec   (3254 perm/sec)   p_kst 9.296111e-02   p_cons 3.188889e-03   p_joint 1.305556e-03

Joint ci ratio: 1.352605e-01	ci left: 2.111641e-03	ci right 2.420561e-03	k: 837	n:370000
Cons ci ratio: 1.134043e-01	ci left: 3.036325e-03	ci right 3.403956e-03	k: 1190	n:370000
KS ci ratio: 2.012712e-02	ci left: 9.204988e-02	ci right 9.392407e-02	k: 34404	n:370000
HAX1   370000 perm   115 sec   (3215 perm/sec)   p_kst 9.298378e-02   p_cons 3.216216e-03   p_joint 2.262162e-03

Joint ci ratio: 1.356708e-01	ci left: 2.043355e-03	ci right 2.343264e-03	k: 832	n:380000
Cons ci ratio: 1.120949e-01	ci left: 3.028027e-03	ci right 3.390140e-03	k: 1218	n:380000
KS ci ratio: 1.986731e-02	ci left: 9.200501e-02	ci right 9.385383e-02	k: 35312	n:380000
HAX1   380000 perm   120 sec   (3177 perm/sec)   p_kst 9.292632e-02   p_cons 3.205263e-03   p_joint 2.189474e-03

Joint ci ratio: 1.170688e-01	ci left: 2.698803e-03	ci right 3.036856e-03	k: 1117	n:390000
Cons ci ratio: 1.105191e-01	ci left: 3.037631e-03	ci right 3.395454e-03	k: 1253	n:390000
KS ci ratio: 1.961312e-02	ci left: 9.199833e-02	ci right 9.382310e-02	k: 36234	n:390000
HAX1   390000 perm   124 sec   (3142 perm/sec)   p_kst 9.290769e-02   p_cons 3.212821e-03   p_joint 2.864103e-03

Joint ci ratio: 1.190653e-01	ci left: 2.541552e-03	ci right 2.865719e-03	k: 1080	n:400000
Cons ci ratio: 1.178151e-01	ci left: 2.597353e-03	ci right 2.924916e-03	k: 1103	n:400000
KS ci ratio: 1.936643e-02	ci left: 9.200956e-02	ci right 9.381134e-02	k: 37163	n:400000
HAX1   400000 perm   129 sec   (3107 perm/sec)   p_kst 9.290750e-02   p_cons 2.757500e-03   p_joint 2.700000e-03

Joint ci ratio: 1.184664e-01	ci left: 2.505592e-03	ci right 2.823452e-03	k: 1091	n:410000
Cons ci ratio: 1.164520e-01	ci left: 2.595559e-03	ci right 2.918849e-03	k: 1129	n:410000
KS ci ratio: 1.914185e-02	ci left: 9.190623e-02	ci right 9.368489e-02	k: 38045	n:410000
HAX1   410000 perm   133 sec   (3074 perm/sec)   p_kst 9.279268e-02   p_cons 2.753659e-03   p_joint 2.660976e-03

Joint ci ratio: 1.299489e-01	ci left: 2.021389e-03	ci right 2.304597e-03	k: 907	n:420000
Cons ci ratio: 1.149360e-01	ci left: 2.603122e-03	ci right 2.922847e-03	k: 1159	n:420000
KS ci ratio: 1.891419e-02	ci left: 9.190278e-02	ci right 9.365999e-02	k: 38967	n:420000
HAX1   420000 perm   138 sec   (3041 perm/sec)   p_kst 9.277857e-02   p_cons 2.759524e-03   p_joint 2.159524e-03

Joint ci ratio: 1.291001e-01	ci left: 2.001381e-03	ci right 2.279814e-03	k: 919	n:430000
Cons ci ratio: 1.135734e-01	ci left: 2.605840e-03	ci right 2.921850e-03	k: 1187	n:430000
KS ci ratio: 1.869446e-02	ci left: 9.189961e-02	ci right 9.363612e-02	k: 39889	n:430000
HAX1   430000 perm   143 sec   (3009 perm/sec)   p_kst 9.276512e-02   p_cons 2.760465e-03   p_joint 2.137209e-03

Joint ci ratio: 1.352850e-01	ci left: 1.775677e-03	ci right 2.035497e-03	k: 837	n:440000
Cons ci ratio: 1.125369e-01	ci left: 2.595202e-03	ci right 2.906858e-03	k: 1209	n:440000
KS ci ratio: 1.849296e-02	ci left: 9.179937e-02	ci right 9.351509e-02	k: 40768	n:440000
HAX1   440000 perm   148 sec   (2978 perm/sec)   p_kst 9.265455e-02   p_cons 2.747727e-03   p_joint 1.902273e-03

Joint ci ratio: 1.358575e-01	ci left: 1.721187e-03	ci right 1.974185e-03	k: 830	n:450000
Cons ci ratio: 1.114829e-01	ci left: 2.587209e-03	ci right 2.894805e-03	k: 1232	n:450000
KS ci ratio: 1.828139e-02	ci left: 9.185417e-02	ci right 9.355107e-02	k: 41715	n:450000
HAX1   450000 perm   153 sec   (2946 perm/sec)   p_kst 9.270000e-02   p_cons 2.737778e-03   p_joint 1.844444e-03

Joint ci ratio: 1.343305e-01	ci left: 1.723678e-03	ci right 1.973968e-03	k: 849	n:460000
Cons ci ratio: 1.101069e-01	ci left: 2.596490e-03	ci right 2.901131e-03	k: 1263	n:460000
KS ci ratio: 1.809235e-02	ci left: 9.176381e-02	ci right 9.344133e-02	k: 42596	n:460000
HAX1   460000 perm   158 sec   (2917 perm/sec)   p_kst 9.260000e-02   p_cons 2.745652e-03   p_joint 1.845652e-03

Joint ci ratio: 1.444781e-01	ci left: 1.450830e-03	ci right 1.678789e-03	k: 734	n:470000
Cons ci ratio: 1.089918e-01	ci left: 2.595049e-03	ci right 2.896240e-03	k: 1289	n:470000
KS ci ratio: 1.789228e-02	ci left: 9.183419e-02	ci right 9.349424e-02	k: 43551	n:470000
HAX1   470000 perm   163 sec   (2884 perm/sec)   p_kst 9.266170e-02   p_cons 2.742553e-03   p_joint 1.561702e-03

Joint ci ratio: 1.436026e-01	ci left: 1.438678e-03	ci right 1.663240e-03	k: 743	n:480000
Cons ci ratio: 1.079100e-01	ci left: 2.593682e-03	ci right 2.891537e-03	k: 1315	n:480000
KS ci ratio: 1.770923e-02	ci left: 9.180213e-02	ci right 9.344445e-02	k: 44458	n:480000
HAX1   480000 perm   168 sec   (2854 perm/sec)   p_kst 9.262083e-02   p_cons 2.739583e-03   p_joint 1.547917e-03

Joint ci ratio: 1.419894e-01	ci left: 1.442772e-03	ci right 1.665229e-03	k: 760	n:490000
Cons ci ratio: 1.068198e-01	ci left: 2.594372e-03	ci right 2.889107e-03	k: 1342	n:490000
KS ci ratio: 1.752786e-02	ci left: 9.180806e-02	ci right 9.343349e-02	k: 45383	n:490000
HAX1   490000 perm   173 sec   (2826 perm/sec)   p_kst 9.261837e-02   p_cons 2.738776e-03   p_joint 1.551020e-03

Joint ci ratio: 1.065447e-01	ci left: 2.556109e-03	ci right 2.845702e-03	k: 1349	n:500000
Cons ci ratio: 1.061903e-01	ci left: 2.573631e-03	ci right 2.864179e-03	k: 1358	n:500000
KS ci ratio: 1.735359e-02	ci left: 9.179790e-02	ci right 9.340683e-02	k: 46300	n:500000
HAX1   500000 perm   179 sec   (2796 perm/sec)   p_kst 9.260000e-02   p_cons 2.716000e-03   p_joint 2.698000e-03

Joint ci ratio: 9.690878e-02	ci left: 3.043017e-03	ci right 3.354826e-03	k: 1630	n:510000
Cons ci ratio: 1.051129e-01	ci left: 2.576619e-03	ci right 2.864370e-03	k: 1386	n:510000
KS ci ratio: 1.717521e-02	ci left: 9.187805e-02	ci right 9.347168e-02	k: 47263	n:510000
HAX1   510000 perm   184 sec   (2769 perm/sec)   p_kst 9.267255e-02   p_cons 2.717647e-03   p_joint 3.196078e-03

Joint ci ratio: 9.679277e-02	ci left: 2.992000e-03	ci right 3.298193e-03	k: 1634	n:520000
Cons ci ratio: 1.041045e-01	ci left: 2.577633e-03	ci right 2.862567e-03	k: 1413	n:520000
KS ci ratio: 1.701116e-02	ci left: 9.186709e-02	ci right 9.344515e-02	k: 48180	n:520000
HAX1   520000 perm   190 sec   (2741 perm/sec)   p_kst 9.265385e-02   p_cons 2.717308e-03   p_joint 3.142308e-03

Joint ci ratio: 9.606174e-02	ci left: 2.981578e-03	ci right 3.284271e-03	k: 1659	n:530000
Cons ci ratio: 1.031246e-01	ci left: 2.578622e-03	ci right 2.860820e-03	k: 1440	n:530000
KS ci ratio: 1.685304e-02	ci left: 9.184344e-02	ci right 9.340629e-02	k: 49090	n:530000
HAX1   530000 perm   195 sec   (2713 perm/sec)   p_kst 9.262264e-02   p_cons 2.716981e-03   p_joint 3.130189e-03

Joint ci ratio: 9.531864e-02	ci left: 2.973359e-03	ci right 3.272752e-03	k: 1685	n:540000
Cons ci ratio: 1.023118e-01	ci left: 2.572368e-03	ci right 2.851529e-03	k: 1463	n:540000
KS ci ratio: 1.670165e-02	ci left: 9.179676e-02	ci right 9.334465e-02	k: 49987	n:540000
HAX1   540000 perm   201 sec   (2688 perm/sec)   p_kst 9.256852e-02   p_cons 2.709259e-03   p_joint 3.120370e-03

Joint ci ratio: 9.407032e-02	ci left: 2.999181e-03	ci right 3.297000e-03	k: 1730	n:550000
Cons ci ratio: 1.013131e-01	ci left: 2.576982e-03	ci right 2.853752e-03	k: 1492	n:550000
KS ci ratio: 1.654710e-02	ci left: 9.182429e-02	ci right 9.335818e-02	k: 50924	n:550000
HAX1   550000 perm   207 sec   (2662 perm/sec)   p_kst 9.258909e-02   p_cons 2.712727e-03   p_joint 3.145455e-03

Joint ci ratio: 1.001453e-01	ci left: 2.591891e-03	ci right 2.866865e-03	k: 1527	n:560000
Cons ci ratio: 1.005087e-01	ci left: 2.572740e-03	ci right 2.846731e-03	k: 1516	n:560000
KS ci ratio: 1.640373e-02	ci left: 9.177974e-02	ci right 9.329948e-02	k: 51821	n:560000
HAX1   560000 perm   212 sec   (2636 perm/sec)   p_kst 9.253750e-02   p_cons 2.707143e-03   p_joint 2.726786e-03

Joint ci ratio: 1.021095e-01	ci left: 2.447229e-03	ci right 2.712253e-03	k: 1469	n:570000
Cons ci ratio: 9.952917e-02	ci left: 2.578920e-03	ci right 2.850735e-03	k: 1546	n:570000
KS ci ratio: 1.625417e-02	ci left: 9.183819e-02	ci right 9.334490e-02	k: 52776	n:570000
HAX1   570000 perm   218 sec   (2612 perm/sec)   p_kst 9.258947e-02   p_cons 2.712281e-03   p_joint 2.577193e-03

Joint ci ratio: 1.013543e-01	ci left: 2.442001e-03	ci right 2.704386e-03	k: 1491	n:580000
Cons ci ratio: 9.892424e-02	ci left: 2.566400e-03	ci right 2.835157e-03	k: 1565	n:580000
KS ci ratio: 1.609972e-02	ci left: 9.198745e-02	ci right 9.348214e-02	k: 53785	n:580000
HAX1   580000 perm   224 sec   (2586 perm/sec)   p_kst 9.273276e-02   p_cons 2.698276e-03   p_joint 2.570690e-03

Joint ci ratio: 1.008831e-01	ci left: 2.423739e-03	ci right 2.682879e-03	k: 1505	n:590000
Cons ci ratio: 9.826806e-02	ci left: 2.557617e-03	ci right 2.823575e-03	k: 1586	n:590000
KS ci ratio: 1.596517e-02	ci left: 9.196790e-02	ci right 9.344966e-02	k: 54697	n:590000
HAX1   590000 perm   230 sec   (2562 perm/sec)   p_kst 9.270678e-02   p_cons 2.688136e-03   p_joint 2.550847e-03

Joint ci ratio: 9.999058e-02	ci left: 2.427213e-03	ci right 2.684294e-03	k: 1532	n:600000
Cons ci ratio: 9.729165e-02	ci left: 2.567020e-03	ci right 2.831152e-03	k: 1618	n:600000
KS ci ratio: 1.582813e-02	ci left: 9.201050e-02	ci right 9.348011e-02	k: 55646	n:600000
HAX1   600000 perm   236 sec   (2539 perm/sec)   p_kst 9.274333e-02   p_cons 2.696667e-03   p_joint 2.553333e-03

Outputting figure to mutsig2_images.part000000000077/HAX1.4_868_600000_0.092743_0.0026967_0.0025533.png
                gene_name: HAX1
               theta_stop: 0.100 
                    nperm: 600000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.0027 
      ci_cons_bounds_left: 0.0026 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.0026 
     ci_joint_bounds_left: 0.0024 
    ci_joint_bounds_right: 0.0027 

Current progress: 63 percent done.
HBB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.584875e-02	ci left: 5.346773e-01	ci right 5.542968e-01	k: 5445	n:10000
Cons ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
HBB   10000 perm   1 sec   (7721 perm/sec)   p_kst 2.709000e-01   p_cons 6.738000e-01   p_joint 5.445000e-01

Outputting figure to mutsig2_images.part000000000077/HBB.3_456_10000_0.2709_0.6738_0.5445.png
                gene_name: HBB
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 65 percent done.
HBD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
HBD   10000 perm   1 sec   (7277 perm/sec)   p_kst 8.175000e-01   p_cons 4.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HBD.4_456_10000_0.8175_0.4533_1.png
                gene_name: HBD
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
HDAC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
KS ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
HDAC7   10000 perm   2 sec   (5931 perm/sec)   p_kst 7.378000e-01   p_cons 2.170000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC7.4_3080_10000_0.7378_0.217_0.5536.png
                gene_name: HDAC7
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 68 percent done.
HEATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
HEATR3   10000 perm   2 sec   (6022 perm/sec)   p_kst 3.540000e-02   p_cons 7.478000e-01   p_joint 1.033000e-01

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 1.601173e-02	ci left: 7.437362e-01	ci right 7.557911e-01	k: 14996	n:20000
KS ci ratio: 1.440565e-01	ci left: 3.312301e-02	ci right 3.831311e-02	k: 713	n:20000
HEATR3   20000 perm   4 sec   (5557 perm/sec)   p_kst 3.565000e-02   p_cons 7.498000e-01   p_joint 6.905000e-02

Joint ci ratio: 6.711521e-02	ci left: 9.866293e-02	ci right 1.055477e-01	k: 3062	n:30000
Cons ci ratio: 1.342436e-02	ci left: 7.347284e-01	ci right 7.446918e-01	k: 22192	n:30000
KS ci ratio: 1.148169e-01	ci left: 3.524875e-02	ci right 3.957476e-02	k: 1121	n:30000
HEATR3   30000 perm   6 sec   (5335 perm/sec)   p_kst 3.736667e-02   p_cons 7.397333e-01   p_joint 1.020667e-01

Joint ci ratio: 6.778743e-02	ci left: 7.452877e-02	ci right 7.978281e-02	k: 3085	n:40000
Cons ci ratio: 1.134619e-02	ci left: 7.447204e-01	ci right 7.532434e-01	k: 29960	n:40000
KS ci ratio: 9.885272e-02	ci left: 3.595217e-02	ci right 3.971530e-02	k: 1512	n:40000
HEATR3   40000 perm   8 sec   (5134 perm/sec)   p_kst 3.780000e-02   p_cons 7.490000e-01   p_joint 7.712500e-02

Outputting figure to mutsig2_images.part000000000077/HEATR3.4_2103_40000_0.0378_0.749_0.077125.png
                gene_name: HEATR3
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.080 

Current progress: 70 percent done.
HEATR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
Cons ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
KS ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
HEATR5A   10000 perm   2 sec   (4977 perm/sec)   p_kst 1.472000e-01   p_cons 5.342000e-01   p_joint 3.083000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5A.4_5382_10000_0.1472_0.5342_0.3083.png
                gene_name: HEATR5A
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 72 percent done.
HEATR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
Cons ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
KS ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
HEATR6   10000 perm   2 sec   (5828 perm/sec)   p_kst 9.350000e-01   p_cons 9.630000e-01   p_joint 9.899000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR6.4_3626_10000_0.935_0.963_0.9899.png
                gene_name: HEATR6
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
HAVCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
Cons ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
KS ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
HAVCR2   10000 perm   1 sec   (6866 perm/sec)   p_kst 8.546000e-01   p_cons 1.773000e-01   p_joint 5.369000e-01

Outputting figure to mutsig2_images.part000000000077/HAVCR2.3_934_10000_0.8546_0.1773_0.5369.png
                gene_name: HAVCR2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
HCST
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
HCST   10000 perm   1 sec   (7651 perm/sec)   p_kst 9.801000e-01   p_cons 6.440000e-02   p_joint 1.108000e-01

Joint ci ratio: 7.455001e-02	ci left: 1.169040e-01	ci right 1.260064e-01	k: 2428	n:20000
Cons ci ratio: 1.046534e-01	ci left: 6.210954e-02	ci right 6.901742e-02	k: 1310	n:20000
KS ci ratio: 3.959299e-03	ci left: 9.780158e-01	ci right 9.819429e-01	k: 19601	n:20000
HCST   20000 perm   3 sec   (6665 perm/sec)   p_kst 9.800500e-01   p_cons 6.550000e-02   p_joint 1.214000e-01

Joint ci ratio: 6.739738e-02	ci left: 9.790777e-02	ci right 1.047697e-01	k: 3039	n:30000
Cons ci ratio: 8.590647e-02	ci left: 6.210525e-02	ci right 6.771271e-02	k: 1946	n:30000
KS ci ratio: 3.224633e-03	ci left: 9.784903e-01	ci right 9.816824e-01	k: 29404	n:30000
HCST   30000 perm   5 sec   (6344 perm/sec)   p_kst 9.801333e-01   p_cons 6.486667e-02   p_joint 1.013000e-01

Outputting figure to mutsig2_images.part000000000077/HCST.2_298_30000_0.98013_0.064867_0.1013.png
                gene_name: HCST
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 77 percent done.
HDAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
Cons ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
KS ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
HDAC1   10000 perm   1 sec   (6828 perm/sec)   p_kst 3.471000e-01   p_cons 4.591000e-01   p_joint 3.953000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC1.3_1505_10000_0.3471_0.4591_0.3953.png
                gene_name: HDAC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 79 percent done.
HDGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 3.910801e-02	ci left: 4.912511e-01	ci right 5.109483e-01	k: 5011	n:10000
HDGF   10000 perm   1 sec   (6994 perm/sec)   p_kst 5.011000e-01   p_cons 3.421000e-01   p_joint 5.327000e-01

Outputting figure to mutsig2_images.part000000000077/HDGF.3_956_10000_0.5011_0.3421_0.5327.png
                gene_name: HDGF
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 81 percent done.
HDGFRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
Cons ci ratio: 1.845427e-02	ci left: 8.109049e-01	ci right 8.261091e-01	k: 8186	n:10000
KS ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
HDGFRP3   10000 perm   1 sec   (7703 perm/sec)   p_kst 1.423000e-01   p_cons 8.186000e-01   p_joint 2.452000e-01

Outputting figure to mutsig2_images.part000000000077/HDGFRP3.3_636_10000_0.1423_0.8186_0.2452.png
                gene_name: HDGFRP3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 82 percent done.
HEATR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
Cons ci ratio: 9.617167e-03	ci left: 9.385866e-01	ci right 9.477531e-01	k: 9433	n:10000
KS ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
HEATR4   10000 perm   2 sec   (6662 perm/sec)   p_kst 5.263000e-01   p_cons 9.433000e-01   p_joint 7.220000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR4.3_3004_10000_0.5263_0.9433_0.722.png
                gene_name: HEATR4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 84 percent done.
HAUS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
HAUS4   10000 perm   1 sec   (6871 perm/sec)   p_kst 2.047000e-01   p_cons 2.421000e-01   p_joint 1.615000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS4.2_1128_10000_0.2047_0.2421_0.1615.png
                gene_name: HAUS4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 86 percent done.
HAUS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
HAUS5   10000 perm   2 sec   (6580 perm/sec)   p_kst 6.777000e-01   p_cons 5.493000e-01   p_joint 6.077000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS5.2_1978_10000_0.6777_0.5493_0.6077.png
                gene_name: HAUS5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 88 percent done.
HBG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
HBG1   10000 perm   1 sec   (7813 perm/sec)   p_kst 3.070000e-02   p_cons 9.440000e-01   p_joint 1.670000e-01

Joint ci ratio: 6.666347e-02	ci left: 1.424641e-01	ci right 1.523386e-01	k: 2947	n:20000
Cons ci ratio: 7.583201e-03	ci left: 9.267853e-01	ci right 9.338890e-01	k: 18608	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
HBG1   20000 perm   3 sec   (6787 perm/sec)   p_kst 3.115000e-02   p_cons 9.304000e-01   p_joint 1.473500e-01

Joint ci ratio: 5.142952e-02	ci left: 1.580448e-01	ci right 1.664207e-01	k: 4866	n:30000
Cons ci ratio: 6.207039e-03	ci left: 9.271222e-01	ci right 9.329275e-01	k: 27902	n:30000
KS ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
HBG1   30000 perm   5 sec   (6468 perm/sec)   p_kst 3.083333e-02   p_cons 9.300667e-01   p_joint 1.622000e-01

Joint ci ratio: 4.494652e-02	ci left: 1.561719e-01	ci right 1.633776e-01	k: 6390	n:40000
Cons ci ratio: 5.408883e-03	ci left: 9.266935e-01	ci right 9.317440e-01	k: 37170	n:40000
KS ci ratio: 1.092171e-01	ci left: 2.949349e-02	ci right 3.292501e-02	k: 1247	n:40000
HBG1   40000 perm   7 sec   (6087 perm/sec)   p_kst 3.117500e-02   p_cons 9.292500e-01   p_joint 1.597500e-01

Joint ci ratio: 2.741298e-02	ci left: 2.862640e-01	ci right 2.942404e-01	k: 14512	n:50000
Cons ci ratio: 4.882092e-03	ci left: 9.257399e-01	ci right 9.302902e-01	k: 46402	n:50000
KS ci ratio: 9.720566e-02	ci left: 2.996674e-02	ci right 3.304796e-02	k: 1574	n:50000
HBG1   50000 perm   8 sec   (5920 perm/sec)   p_kst 3.148000e-02   p_cons 9.280400e-01   p_joint 2.902400e-01

Outputting figure to mutsig2_images.part000000000077/HBG1.2_456_50000_0.03148_0.92804_0.29024.png
                gene_name: HBG1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 89 percent done.
HCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.067232e-02	ci left: 3.648027e-01	ci right 3.838706e-01	k: 3743	n:10000
Cons ci ratio: 2.221543e-02	ci left: 7.483685e-01	ci right 7.652816e-01	k: 7569	n:10000
KS ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
HCN2   10000 perm   2 sec   (6453 perm/sec)   p_kst 1.742000e-01   p_cons 7.569000e-01   p_joint 3.743000e-01

Outputting figure to mutsig2_images.part000000000077/HCN2.2_2702_10000_0.1742_0.7569_0.3743.png
                gene_name: HCN2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 91 percent done.
HDAC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
KS ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
HDAC5   10000 perm   2 sec   (6244 perm/sec)   p_kst 8.395000e-01   p_cons 1.431000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HDAC5.2_3476_10000_0.8395_0.1431_1.png
                gene_name: HDAC5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
HDAC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
HDAC8   10000 perm   1 sec   (7282 perm/sec)   p_kst 9.395000e-01   p_cons 3.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HDAC8.2_1264_10000_0.9395_0.3825_1.png
                gene_name: HDAC8
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
HDGFRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
HDGFRP2   10000 perm   2 sec   (6606 perm/sec)   p_kst 5.559000e-01   p_cons 7.360000e-02   p_joint 1.149000e-01

Joint ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
Cons ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
KS ci ratio: 2.477088e-02	ci left: 5.490313e-01	ci right 5.628524e-01	k: 11119	n:20000
HDGFRP2   20000 perm   3 sec   (6019 perm/sec)   p_kst 5.559500e-01   p_cons 6.965000e-02   p_joint 5.325000e-02

Joint ci ratio: 1.006797e-01	ci left: 4.567332e-02	ci right 5.054801e-02	k: 1442	n:30000
Cons ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
KS ci ratio: 2.035512e-02	ci left: 5.471522e-01	ci right 5.584376e-01	k: 16584	n:30000
HDGFRP2   30000 perm   5 sec   (5681 perm/sec)   p_kst 5.528000e-01   p_cons 6.966667e-02   p_joint 4.806667e-02

Joint ci ratio: 3.504643e-02	ci left: 2.340569e-01	ci right 2.424311e-01	k: 9529	n:40000
Cons ci ratio: 6.939650e-02	ci left: 7.130559e-02	ci right 7.645648e-02	k: 2954	n:40000
KS ci ratio: 1.763983e-02	ci left: 5.475860e-01	ci right 5.573564e-01	k: 22099	n:40000
HDGFRP2   40000 perm   7 sec   (5490 perm/sec)   p_kst 5.524750e-01   p_cons 7.385000e-02   p_joint 2.382250e-01

Outputting figure to mutsig2_images.part000000000077/HDGFRP2.2_2084_40000_0.55248_0.07385_0.23822.png
                gene_name: HDGFRP2
               theta_stop: 0.069 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 96 percent done.
HEPACAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
Cons ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
KS ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
HEPACAM   10000 perm   1 sec   (7055 perm/sec)   p_kst 6.550000e-02   p_cons 8.945000e-01   p_joint 3.006000e-01

Joint ci ratio: 3.433701e-02	ci left: 3.877172e-01	ci right 4.013134e-01	k: 7890	n:20000
Cons ci ratio: 9.083567e-03	ci left: 8.988655e-01	ci right 9.071169e-01	k: 18061	n:20000
KS ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
HEPACAM   20000 perm   3 sec   (6411 perm/sec)   p_kst 6.315000e-02   p_cons 9.030500e-01   p_joint 3.945000e-01

Joint ci ratio: 3.143903e-02	ci left: 3.359335e-01	ci right 3.466972e-01	k: 10239	n:30000
Cons ci ratio: 7.395836e-03	ci left: 9.001367e-01	ci right 9.068516e-01	k: 27106	n:30000
KS ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
HEPACAM   30000 perm   5 sec   (6099 perm/sec)   p_kst 6.436667e-02   p_cons 9.035333e-01   p_joint 3.413000e-01

Outputting figure to mutsig2_images.part000000000077/HEPACAM.2_1279_30000_0.064367_0.90353_0.3413.png
                gene_name: HEPACAM
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 98 percent done.
HEPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
KS ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
HEPN1   10000 perm   1 sec   (8089 perm/sec)   p_kst 6.112000e-01   p_cons 6.998000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HEPN1.2_271_10000_0.6112_0.6998_1.png
                gene_name: HEPN1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000077
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 77 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 4422010: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000078> was used as the working directory.
Started at Wed Oct 24 17:51:29 2012
Results reported at Wed Oct 24 18:06:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000078.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000078.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 78  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000078.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    885.76 sec.
    Max Memory :      5290 MB
    Max Swap   :      7649 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
78
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 78
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 78: processing genes 6967 - 7057
Calculating significance of each gene.
Using projection method.
6967	HERC2	1
6968	HERC3	9.624311e-01
6969	HERC4	9.924102e-01
6970	HERC5	7.224529e-01
6971	HERC6	1.725626e-01
6972	HERPUD1	9.201132e-01
6973	HERPUD2	3.563558e-01
6974	HES1	6.500258e-01
6975	HES3	3.624182e-01
6976	HES4	1
6977	HES5	1
6978	HES6	1
6979	HES7	1
6980	HESX1	6.745121e-01
6981	HEXA	9.792832e-01
6982	HEXB	1
6983	HEXDC	1
6984	HEXIM1	1
6985	HEXIM2	7.202509e-01
In gene HEY1 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 702     n = 1	mu =   5.35e-07
6986	HEY1	5.357488e-01
6987	HEY2	4.386190e-01
6988	HEYL	6.062117e-01
6989	HFE	9.207779e-01
6990	HFE2	3.650339e-01
6991	HFM1	1
6992	HGD	4.287164e-01
6993	HGF	1.168254e-05
6994	HGFAC	9.238652e-01
6995	HGS	1
6996	HGSNAT	1
6997	HHAT	1.300349e-01
6998	HHATL	1
6999	HHEX	4.357029e-01
7000/18094 7000	HHIP	9.700795e-01
7001	HHIPL1	4.559303e-01
7002	HHIPL2	9.660849e-01
7003	HHLA2	1
7004	HHLA3	2.146348e-01
7005	HIAT1	7.376692e-01
7006	HIATL1	9.609491e-01
7007	HIBADH	6.026710e-01
7008	HIBCH	3.495233e-01
7009	HIC1	1
7010	HIC2	1
7011	HIF1A	9.676059e-01
7012	HIF1AN	8.891023e-01
7013	HIF3A	6.353389e-01
7014	HIGD1A	1
7015	HIGD1B	1
7016	HIGD1C	1
7017	HIGD2A	1
7018	HINFP	7.444706e-01
7019	HINT1	1.395454e-01
7020	HINT2	1
7021	HINT3	1
7022	HIP1	5.482615e-01
7023	HIP1R	1
7024	HIPK1	7.518951e-01
7025	HIPK2	7.033564e-01
7026	HIPK3	8.552928e-01
7027	HIPK4	9.433818e-01
7028	HIRA	7.078501e-01
7029	HIRIP3	1
7030	HIST1H1A	1
7031	HIST1H1B	4.029143e-01
7032	HIST1H1C	1
7033	HIST1H1D	5.053404e-02
7034	HIST1H1E	3.380999e-01
7035	HIST1H1T	3.292460e-01
7036	HIST1H2AA	4.295731e-01
7037	HIST1H2AB	4.095029e-01
7038	HIST1H2AC	7.131652e-02
7039	HIST1H2AD	1
7040	HIST1H2AE	4.836040e-01
7041	HIST1H2AG	6.084270e-01
7042	HIST1H2AH	1
7043	HIST1H2AI	1
7044	HIST1H2AJ	1.481363e-01
7045	HIST1H2AK	1
7046	HIST1H2AL	3.074941e-01
7047	HIST1H2AM	3.330164e-01
7048	HIST1H2BA	1
7049	HIST1H2BB	1
7050	HIST1H2BC	3.164279e-02
7051	HIST1H2BD	1
7052	HIST1H2BE	1
7053	HIST1H2BF	1.859153e-01
7054	HIST1H2BG	1
7055	HIST1H2BH	6.367494e-02
7056	HIST1H2BI	6.040448e-02
7057	HIST1H2BJ	1.698870e-02
Done

Running MutSig 2:
Scatter job 78: processing genes 6967 - 7057
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HERC2
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
Cons ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
KS ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
HERC2   10000 perm   7 sec   (1404 perm/sec)   p_kst 2.462000e-01   p_cons 3.158000e-01   p_joint 2.673000e-01

Outputting figure to mutsig2_images.part000000000078/HERC2.30_14873_10000_0.2462_0.3158_0.2673.png
                gene_name: HERC2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 2 percent done.
HGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
Cons ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
KS ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
HGF   10000 perm   3 sec   (3894 perm/sec)   p_kst 2.911000e-01   p_cons 2.440000e-02   p_joint 9.760000e-02

Joint ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
Cons ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
KS ci ratio: 4.500607e-02	ci left: 2.687702e-01	ci right 2.811953e-01	k: 5499	n:20000
HGF   20000 perm   6 sec   (3520 perm/sec)   p_kst 2.749500e-01   p_cons 2.280000e-02   p_joint 6.695000e-02

Joint ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
Cons ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
KS ci ratio: 3.682433e-02	ci left: 2.690910e-01	ci right 2.792194e-01	k: 8224	n:30000
HGF   30000 perm   9 sec   (3367 perm/sec)   p_kst 2.741333e-01   p_cons 2.330000e-02   p_joint 6.186667e-02

Joint ci ratio: 7.882612e-02	ci left: 5.592529e-02	ci right 6.053911e-02	k: 2328	n:40000
Cons ci ratio: 1.265505e-01	ci left: 2.194073e-02	ci right 2.492900e-02	k: 936	n:40000
KS ci ratio: 3.193028e-02	ci left: 2.692850e-01	ci right 2.780479e-01	k: 10946	n:40000
HGF   40000 perm   12 sec   (3278 perm/sec)   p_kst 2.736500e-01   p_cons 2.340000e-02   p_joint 5.820000e-02

Joint ci ratio: 6.637933e-02	ci left: 6.303165e-02	ci right 6.737899e-02	k: 3259	n:50000
Cons ci ratio: 1.144092e-01	ci left: 2.162605e-02	ci right 2.426974e-02	k: 1146	n:50000
KS ci ratio: 2.850161e-02	ci left: 2.705518e-01	ci right 2.783944e-01	k: 13723	n:50000
HGF   50000 perm   16 sec   (3210 perm/sec)   p_kst 2.744600e-01   p_cons 2.292000e-02   p_joint 6.518000e-02

Joint ci ratio: 5.815259e-02	ci left: 6.834909e-02	ci right 7.245925e-02	k: 4223	n:60000
Cons ci ratio: 1.041471e-01	ci left: 2.186405e-02	ci right 2.428238e-02	k: 1383	n:60000
KS ci ratio: 2.600720e-02	ci left: 2.710647e-01	ci right 2.782238e-01	k: 16478	n:60000
HGF   60000 perm   19 sec   (3156 perm/sec)   p_kst 2.746333e-01   p_cons 2.305000e-02   p_joint 7.038333e-02

Joint ci ratio: 5.535850e-02	ci left: 6.498946e-02	ci right 6.870369e-02	k: 4678	n:70000
Cons ci ratio: 9.696594e-02	ci left: 2.170692e-02	ci right 2.393288e-02	k: 1596	n:70000
KS ci ratio: 2.409484e-02	ci left: 2.710540e-01	ci right 2.776790e-01	k: 19205	n:70000
HGF   70000 perm   23 sec   (3099 perm/sec)   p_kst 2.743571e-01   p_cons 2.280000e-02   p_joint 6.682857e-02

Outputting figure to mutsig2_images.part000000000078/HGF.29_2279_70000_0.27436_0.0228_0.066829.png
                gene_name: HGF
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 4 percent done.
HFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
Cons ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
HFM1   10000 perm   3 sec   (3841 perm/sec)   p_kst 3.606000e-01   p_cons 7.760000e-02   p_joint 1.770000e-01

Joint ci ratio: 6.255865e-02	ci left: 1.589418e-01	ci right 1.692560e-01	k: 3281	n:20000
Cons ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
KS ci ratio: 3.696224e-02	ci left: 3.532438e-01	ci right 3.665969e-01	k: 7198	n:20000
HFM1   20000 perm   6 sec   (3480 perm/sec)   p_kst 3.599000e-01   p_cons 7.695000e-02   p_joint 1.640500e-01

Outputting figure to mutsig2_images.part000000000078/HFM1.15_4460_20000_0.3599_0.07695_0.16405.png
                gene_name: HFM1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 7 percent done.
HHIPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
Cons ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
KS ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
HHIPL2   10000 perm   2 sec   (4721 perm/sec)   p_kst 1.067000e-01   p_cons 3.842000e-01   p_joint 2.037000e-01

Joint ci ratio: 6.235421e-02	ci left: 1.598304e-01	ci right 1.701672e-01	k: 3299	n:20000
Cons ci ratio: 3.661585e-02	ci left: 3.575759e-01	ci right 3.709636e-01	k: 7285	n:20000
KS ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
HHIPL2   20000 perm   5 sec   (4195 perm/sec)   p_kst 1.079000e-01   p_cons 3.642500e-01   p_joint 1.649500e-01

Outputting figure to mutsig2_images.part000000000078/HHIPL2.11_2211_20000_0.1079_0.36425_0.16495.png
                gene_name: HHIPL2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 9 percent done.
HIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
KS ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
HIP1   10000 perm   3 sec   (3978 perm/sec)   p_kst 5.985000e-01   p_cons 6.460000e-02   p_joint 2.516000e-01

Joint ci ratio: 5.088879e-02	ci left: 2.229436e-01	ci right 2.346354e-01	k: 4575	n:20000
Cons ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
KS ci ratio: 2.280811e-02	ci left: 5.894115e-01	ci right 6.030605e-01	k: 11925	n:20000
HIP1   20000 perm   5 sec   (3752 perm/sec)   p_kst 5.962500e-01   p_cons 6.600000e-02   p_joint 2.287500e-01

Joint ci ratio: 3.606830e-02	ci left: 2.773769e-01	ci right 2.875986e-01	k: 8474	n:30000
Cons ci ratio: 8.502258e-02	ci left: 6.334662e-02	ci right 6.900442e-02	k: 1984	n:30000
KS ci ratio: 1.871540e-02	ci left: 5.882838e-01	ci right 5.994314e-01	k: 17816	n:30000
HIP1   30000 perm   8 sec   (3641 perm/sec)   p_kst 5.938667e-01   p_cons 6.613333e-02   p_joint 2.824667e-01

Outputting figure to mutsig2_images.part000000000078/HIP1.10_3238_30000_0.59387_0.066133_0.28247.png
                gene_name: HIP1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 11 percent done.
HERC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
KS ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
HERC6   10000 perm   2 sec   (4640 perm/sec)   p_kst 8.904000e-01   p_cons 6.528000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000078/HERC6.9_2958_10000_0.8904_0.6528_0.857.png
                gene_name: HERC6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 13 percent done.
HIPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
Cons ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
KS ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
HIPK2   10000 perm   2 sec   (4221 perm/sec)   p_kst 1.610000e-01   p_cons 8.300000e-02   p_joint 7.850000e-02

Joint ci ratio: 1.144539e-01	ci left: 5.222078e-02	ci right 5.860924e-02	k: 1107	n:20000
Cons ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
KS ci ratio: 6.391496e-02	ci left: 1.532167e-01	ci right 1.633828e-01	k: 3165	n:20000
HIPK2   20000 perm   5 sec   (3818 perm/sec)   p_kst 1.582500e-01   p_cons 8.355000e-02   p_joint 5.535000e-02

Joint ci ratio: 8.436454e-02	ci left: 6.429418e-02	ci right 6.998999e-02	k: 2013	n:30000
Cons ci ratio: 7.555690e-02	ci left: 7.921405e-02	ci right 8.546712e-02	k: 2469	n:30000
KS ci ratio: 5.227164e-02	ci left: 1.537244e-01	ci right 1.620087e-01	k: 4735	n:30000
HIPK2   30000 perm   8 sec   (3658 perm/sec)   p_kst 1.578333e-01   p_cons 8.230000e-02   p_joint 6.710000e-02

Outputting figure to mutsig2_images.part000000000078/HIPK2.8_3657_30000_0.15783_0.0823_0.0671.png
                gene_name: HIPK2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.070 

Current progress: 16 percent done.
HERC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
Cons ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
HERC4   10000 perm   2 sec   (4279 perm/sec)   p_kst 4.197000e-01   p_cons 1.211000e-01   p_joint 2.200000e-01

Joint ci ratio: 4.273203e-02	ci left: 2.897779e-01	ci right 3.024815e-01	k: 5922	n:20000
Cons ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
KS ci ratio: 3.175814e-02	ci left: 4.254695e-01	ci right 4.392502e-01	k: 8647	n:20000
HERC4   20000 perm   5 sec   (3733 perm/sec)   p_kst 4.323500e-01   p_cons 1.295000e-01   p_joint 2.961000e-01

Outputting figure to mutsig2_images.part000000000078/HERC4.7_3270_20000_0.43235_0.1295_0.2961.png
                gene_name: HERC4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 18 percent done.
HIPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.563197e-03	ci left: 9.392090e-01	ci right 9.483304e-01	k: 9439	n:10000
KS ci ratio: 1.201360e-02	ci left: 9.085394e-01	ci right 9.196180e-01	k: 9142	n:10000
HIPK1   10000 perm   2 sec   (4257 perm/sec)   p_kst 9.142000e-01   p_cons 9.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIPK1.7_3795_10000_0.9142_0.9439_1.png
                gene_name: HIPK1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
HHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
Cons ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KS ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
HHAT   10000 perm   2 sec   (5464 perm/sec)   p_kst 9.323000e-01   p_cons 3.763000e-01   p_joint 6.721000e-01

Outputting figure to mutsig2_images.part000000000078/HHAT.6_1624_10000_0.9323_0.3763_0.6721.png
                gene_name: HHAT
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 22 percent done.
HIRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.415983e-02	ci left: 7.158309e-01	ci right 7.334380e-01	k: 7247	n:10000
Cons ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
HIRA   10000 perm   2 sec   (4501 perm/sec)   p_kst 8.386000e-01   p_cons 2.622000e-01   p_joint 7.247000e-01

Outputting figure to mutsig2_images.part000000000078/HIRA.6_3154_10000_0.8386_0.2622_0.7247.png
                gene_name: HIRA
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 24 percent done.
HERC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
KS ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
HERC5   10000 perm   2 sec   (4722 perm/sec)   p_kst 5.106000e-01   p_cons 9.300000e-03   p_joint 3.860000e-02

Joint ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
Cons ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
KS ci ratio: 2.689720e-02	ci left: 5.080468e-01	ci right 5.219488e-01	k: 10300	n:20000
HERC5   20000 perm   5 sec   (4183 perm/sec)   p_kst 5.150000e-01   p_cons 8.700000e-03   p_joint 3.515000e-02

Joint ci ratio: 1.001342e-01	ci left: 4.616135e-02	ci right 5.105987e-02	k: 1457	n:30000
Cons ci ratio: 2.473828e-01	ci left: 7.273253e-03	ci right 9.356987e-03	k: 248	n:30000
KS ci ratio: 2.204273e-02	ci left: 5.074930e-01	ci right 5.188378e-01	k: 15395	n:30000
HERC5   30000 perm   7 sec   (4008 perm/sec)   p_kst 5.131667e-01   p_cons 8.266667e-03   p_joint 4.856667e-02

Joint ci ratio: 1.007002e-01	ci left: 3.465905e-02	ci right 3.835863e-02	k: 1459	n:40000
Cons ci ratio: 2.001318e-01	ci left: 8.548862e-03	ci right 1.047335e-02	k: 379	n:40000
KS ci ratio: 1.906657e-02	ci left: 5.088636e-01	ci right 5.186844e-01	k: 20551	n:40000
HERC5   40000 perm   10 sec   (3872 perm/sec)   p_kst 5.137750e-01   p_cons 9.475000e-03   p_joint 3.647500e-02

Joint ci ratio: 8.343512e-02	ci left: 4.051322e-02	ci right 4.406017e-02	k: 2113	n:50000
Cons ci ratio: 1.763978e-01	ci left: 8.916851e-03	ci right 1.066077e-02	k: 488	n:50000
KS ci ratio: 1.707957e-02	ci left: 5.086282e-01	ci right 5.174103e-01	k: 25651	n:50000
HERC5   50000 perm   13 sec   (3793 perm/sec)   p_kst 5.130200e-01   p_cons 9.760000e-03   p_joint 4.226000e-02

Joint ci ratio: 8.939782e-02	ci left: 2.966019e-02	ci right 3.245208e-02	k: 1862	n:60000
Cons ci ratio: 1.605871e-01	ci left: 9.043231e-03	ci right 1.063805e-02	k: 589	n:60000
KS ci ratio: 1.561921e-02	ci left: 5.081249e-01	ci right 5.161406e-01	k: 30728	n:60000
HERC5   60000 perm   16 sec   (3722 perm/sec)   p_kst 5.121333e-01   p_cons 9.816667e-03   p_joint 3.103333e-02

Joint ci ratio: 8.549409e-02	ci left: 2.790919e-02	ci right 3.041576e-02	k: 2040	n:70000
Cons ci ratio: 1.489301e-01	ci left: 9.069725e-03	ci right 1.054276e-02	k: 685	n:70000
KS ci ratio: 1.446697e-02	ci left: 5.082038e-01	ci right 5.156238e-01	k: 35834	n:70000
HERC5   70000 perm   19 sec   (3662 perm/sec)   p_kst 5.119143e-01   p_cons 9.785714e-03   p_joint 2.914286e-02

Joint ci ratio: 8.761238e-02	ci left: 2.334189e-02	ci right 2.549279e-02	k: 1952	n:80000
Cons ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
KS ci ratio: 1.353743e-02	ci left: 5.082671e-01	ci right 5.152071e-01	k: 40939	n:80000
HERC5   80000 perm   22 sec   (3596 perm/sec)   p_kst 5.117375e-01   p_cons 9.787500e-03   p_joint 2.440000e-02

Joint ci ratio: 8.354446e-02	ci left: 2.287929e-02	ci right 2.488489e-02	k: 2148	n:90000
Cons ci ratio: 1.317977e-01	ci left: 9.091463e-03	ci right 1.038488e-02	k: 875	n:90000
KS ci ratio: 1.276051e-02	ci left: 5.085729e-01	ci right 5.151153e-01	k: 46066	n:90000
HERC5   90000 perm   26 sec   (3515 perm/sec)   p_kst 5.118444e-01   p_cons 9.722222e-03   p_joint 2.386667e-02

Joint ci ratio: 7.086539e-02	ci left: 2.863685e-02	ci right 3.075055e-02	k: 2968	n:100000
Cons ci ratio: 1.305901e-01	ci left: 8.346525e-03	ci right 9.522224e-03	k: 892	n:100000
KS ci ratio: 1.211017e-02	ci left: 5.085566e-01	ci right 5.147628e-01	k: 51166	n:100000
HERC5   100000 perm   29 sec   (3457 perm/sec)   p_kst 5.116600e-01   p_cons 8.920000e-03   p_joint 2.968000e-02

Joint ci ratio: 6.108911e-02	ci left: 3.497847e-02	ci right 3.719153e-02	k: 3968	n:110000
Cons ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
KS ci ratio: 1.154085e-02	ci left: 5.089503e-01	ci right 5.148672e-01	k: 56310	n:110000
HERC5   110000 perm   32 sec   (3404 perm/sec)   p_kst 5.119091e-01   p_cons 8.863636e-03   p_joint 3.607273e-02

Joint ci ratio: 6.139260e-02	ci left: 3.184864e-02	ci right 3.387401e-02	k: 3942	n:120000
Cons ci ratio: 1.187433e-01	ci left: 8.465300e-03	ci right 9.541963e-03	k: 1079	n:120000
KS ci ratio: 1.104716e-02	ci left: 5.091841e-01	ci right 5.148487e-01	k: 61442	n:120000
HERC5   120000 perm   36 sec   (3352 perm/sec)   p_kst 5.120167e-01   p_cons 8.991667e-03   p_joint 3.285000e-02

Joint ci ratio: 6.863619e-02	ci left: 2.363614e-02	ci right 2.532362e-02	k: 3181	n:130000
Cons ci ratio: 1.141342e-01	ci left: 8.478805e-03	ci right 9.512506e-03	k: 1168	n:130000
KS ci ratio: 1.061119e-02	ci left: 5.094172e-01	ci right 5.148592e-01	k: 66578	n:130000
HERC5   130000 perm   39 sec   (3301 perm/sec)   p_kst 5.121385e-01   p_cons 8.984615e-03   p_joint 2.446923e-02

Joint ci ratio: 6.082300e-02	ci left: 2.793717e-02	ci right 2.969670e-02	k: 4033	n:140000
Cons ci ratio: 1.099350e-01	ci left: 8.504970e-03	ci right 9.501240e-03	k: 1259	n:140000
KS ci ratio: 1.022015e-02	ci left: 5.097636e-01	ci right 5.150073e-01	k: 71734	n:140000
HERC5   140000 perm   43 sec   (3247 perm/sec)   p_kst 5.123857e-01   p_cons 8.992857e-03   p_joint 2.880714e-02

Joint ci ratio: 5.816839e-02	ci left: 2.853119e-02	ci right 3.024706e-02	k: 4407	n:150000
Cons ci ratio: 1.058519e-01	ci left: 8.580181e-03	ci right 9.545605e-03	k: 1358	n:150000
KS ci ratio: 9.864374e-03	ci left: 5.103203e-01	ci right 5.153859e-01	k: 76928	n:150000
HERC5   150000 perm   47 sec   (3203 perm/sec)   p_kst 5.128533e-01   p_cons 9.053333e-03   p_joint 2.938000e-02

Joint ci ratio: 5.743762e-02	ci left: 2.747440e-02	ci right 2.910526e-02	k: 4525	n:160000
Cons ci ratio: 1.023696e-01	ci left: 8.616131e-03	ci right 9.551788e-03	k: 1452	n:160000
KS ci ratio: 9.564119e-03	ci left: 5.097224e-01	ci right 5.146271e-01	k: 81948	n:160000
HERC5   160000 perm   51 sec   (3159 perm/sec)   p_kst 5.121750e-01   p_cons 9.075000e-03   p_joint 2.828125e-02

Joint ci ratio: 4.542981e-02	ci left: 4.100481e-02	ci right 4.291674e-02	k: 7132	n:170000
Cons ci ratio: 1.000287e-01	ci left: 8.504885e-03	ci right 9.406099e-03	k: 1521	n:170000
KS ci ratio: 9.272094e-03	ci left: 5.101443e-01	ci right 5.149023e-01	k: 87129	n:170000
HERC5   170000 perm   55 sec   (3115 perm/sec)   p_kst 5.125235e-01   p_cons 8.947059e-03   p_joint 4.195294e-02

Joint ci ratio: 4.478044e-02	ci left: 3.991821e-02	ci right 4.175217e-02	k: 7349	n:180000
Cons ci ratio: 9.762479e-02	ci left: 8.444164e-03	ci right 9.316208e-03	k: 1597	n:180000
KS ci ratio: 9.008279e-03	ci left: 5.103546e-01	ci right 5.149783e-01	k: 92280	n:180000
HERC5   180000 perm   59 sec   (3072 perm/sec)   p_kst 5.126667e-01   p_cons 8.872222e-03   p_joint 4.082778e-02

Outputting figure to mutsig2_images.part000000000078/HERC5.4_3167_180000_0.51267_0.0088722_0.040828.png
                gene_name: HERC5
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.0089 
      ci_cons_bounds_left: 0.0084 
     ci_cons_bounds_right: 0.0093 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 27 percent done.
HEY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
Cons ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
HEY2   10000 perm   2 sec   (5723 perm/sec)   p_kst 6.103000e-01   p_cons 8.590000e-02   p_joint 2.736000e-01

Joint ci ratio: 4.771694e-02	ci left: 2.462423e-01	ci right 2.583298e-01	k: 5045	n:20000
Cons ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
KS ci ratio: 2.220196e-02	ci left: 6.023471e-01	ci right 6.159211e-01	k: 12183	n:20000
HEY2   20000 perm   4 sec   (4989 perm/sec)   p_kst 6.091500e-01   p_cons 8.610000e-02   p_joint 2.522500e-01

Outputting figure to mutsig2_images.part000000000078/HEY2.4_1034_20000_0.60915_0.0861_0.25225.png
                gene_name: HEY2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 29 percent done.
HFE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.151217e-02	ci left: 5.977488e-01	ci right 6.169886e-01	k: 6074	n:10000
Cons ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
KS ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
HFE2   10000 perm   2 sec   (5777 perm/sec)   p_kst 2.335000e-01   p_cons 7.955000e-01   p_joint 6.074000e-01

Outputting figure to mutsig2_images.part000000000078/HFE2.4_1293_10000_0.2335_0.7955_0.6074.png
                gene_name: HFE2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 31 percent done.
HGD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
Cons ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
KS ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
HGD   10000 perm   2 sec   (5843 perm/sec)   p_kst 5.499000e-01   p_cons 3.910000e-02   p_joint 5.487000e-01

Joint ci ratio: 3.575039e-02	ci left: 3.686826e-01	ci right 3.821536e-01	k: 7508	n:20000
Cons ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
KS ci ratio: 2.530206e-02	ci left: 5.385180e-01	ci right 5.523688e-01	k: 10909	n:20000
HGD   20000 perm   4 sec   (4953 perm/sec)   p_kst 5.454500e-01   p_cons 3.695000e-02   p_joint 3.754000e-01

Joint ci ratio: 3.038031e-02	ci left: 3.514429e-01	ci right 3.623181e-01	k: 10706	n:30000
Cons ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
KS ci ratio: 2.065186e-02	ci left: 5.399782e-01	ci right 5.512797e-01	k: 16369	n:30000
HGD   30000 perm   6 sec   (4768 perm/sec)   p_kst 5.456333e-01   p_cons 3.590000e-02   p_joint 3.568667e-01

Joint ci ratio: 2.375193e-02	ci left: 4.002587e-01	ci right 4.099050e-01	k: 16203	n:40000
Cons ci ratio: 1.021244e-01	ci left: 3.370793e-02	ci right 3.735990e-02	k: 1420	n:40000
KS ci ratio: 1.735538e-02	ci left: 5.556193e-01	ci right 5.653719e-01	k: 22420	n:40000
HGD   40000 perm   9 sec   (4652 perm/sec)   p_kst 5.605000e-01   p_cons 3.550000e-02   p_joint 4.050750e-01

Joint ci ratio: 1.914944e-02	ci left: 4.515671e-01	ci right 4.603180e-01	k: 22797	n:50000
Cons ci ratio: 9.180625e-02	ci left: 3.356262e-02	ci right 3.681164e-02	k: 1758	n:50000
KS ci ratio: 1.552322e-02	ci left: 5.561362e-01	ci right 5.648568e-01	k: 28025	n:50000
HGD   50000 perm   11 sec   (4549 perm/sec)   p_kst 5.605000e-01   p_cons 3.516000e-02   p_joint 4.559400e-01

Outputting figure to mutsig2_images.part000000000078/HGD.4_1394_50000_0.5605_0.03516_0.45594.png
                gene_name: HGD
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 33 percent done.
HGSNAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
KS ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
HGSNAT   10000 perm   2 sec   (5662 perm/sec)   p_kst 4.900000e-02   p_cons 4.227000e-01   p_joint 1.033000e-01

Joint ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
Cons ci ratio: 3.236055e-02	ci left: 4.162894e-01	ci right 4.300329e-01	k: 8463	n:20000
KS ci ratio: 1.196902e-01	ci left: 4.784576e-02	ci right 5.398563e-02	k: 1017	n:20000
HGSNAT   20000 perm   4 sec   (4962 perm/sec)   p_kst 5.085000e-02   p_cons 4.231500e-01   p_joint 1.240500e-01

Joint ci ratio: 6.958309e-02	ci left: 9.232808e-02	ci right 9.901712e-02	k: 2869	n:30000
Cons ci ratio: 2.638613e-02	ci left: 4.182324e-01	ci right 4.294490e-01	k: 12715	n:30000
KS ci ratio: 9.769364e-02	ci left: 4.843977e-02	ci right 5.344765e-02	k: 1527	n:30000
HGSNAT   30000 perm   6 sec   (4699 perm/sec)   p_kst 5.090000e-02   p_cons 4.238333e-01   p_joint 9.563333e-02

Outputting figure to mutsig2_images.part000000000078/HGSNAT.4_1980_30000_0.0509_0.42383_0.095633.png
                gene_name: HGSNAT
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 36 percent done.
HIAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
Cons ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
HIAT1   10000 perm   2 sec   (5508 perm/sec)   p_kst 4.910000e-02   p_cons 1.751000e-01   p_joint 4.420000e-02

Joint ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
Cons ci ratio: 6.037111e-02	ci left: 1.688180e-01	ci right 1.793770e-01	k: 3481	n:20000
KS ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
HIAT1   20000 perm   4 sec   (4886 perm/sec)   p_kst 4.830000e-02   p_cons 1.740500e-01   p_joint 4.625000e-02

Joint ci ratio: 1.031833e-01	ci left: 4.352684e-02	ci right 4.829493e-02	k: 1376	n:30000
Cons ci ratio: 4.904876e-02	ci left: 1.712104e-01	ci right 1.798525e-01	k: 5265	n:30000
KS ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
HIAT1   30000 perm   7 sec   (4615 perm/sec)   p_kst 4.750000e-02   p_cons 1.755000e-01   p_joint 4.586667e-02

Joint ci ratio: 8.784097e-02	ci left: 4.533803e-02	ci right 4.952799e-02	k: 1896	n:40000
Cons ci ratio: 4.256707e-02	ci left: 1.711884e-01	ci right 1.786588e-01	k: 6996	n:40000
KS ci ratio: 8.862855e-02	ci left: 4.455487e-02	ci right 4.871127e-02	k: 1864	n:40000
HIAT1   40000 perm   9 sec   (4441 perm/sec)   p_kst 4.660000e-02   p_cons 1.749000e-01   p_joint 4.740000e-02

Outputting figure to mutsig2_images.part000000000078/HIAT1.4_1521_40000_0.0466_0.1749_0.0474.png
                gene_name: HIAT1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.050 

Current progress: 38 percent done.
HIBCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.906893e-02	ci left: 4.917510e-01	ci right 5.114481e-01	k: 5016	n:10000
Cons ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
KS ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
HIBCH   10000 perm   2 sec   (5346 perm/sec)   p_kst 4.585000e-01   p_cons 5.904000e-01   p_joint 5.016000e-01

Outputting figure to mutsig2_images.part000000000078/HIBCH.4_1217_10000_0.4585_0.5904_0.5016.png
                gene_name: HIBCH
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 40 percent done.
HIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
Cons ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
KS ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
HIF3A   10000 perm   2 sec   (5482 perm/sec)   p_kst 8.567000e-01   p_cons 2.301000e-01   p_joint 5.881000e-01

Outputting figure to mutsig2_images.part000000000078/HIF3A.4_2094_10000_0.8567_0.2301_0.5881.png
                gene_name: HIF3A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 42 percent done.
HIPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
Cons ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
HIPK3   10000 perm   2 sec   (4452 perm/sec)   p_kst 8.991000e-01   p_cons 4.845000e-01   p_joint 8.487000e-01

Outputting figure to mutsig2_images.part000000000078/HIPK3.4_3712_10000_0.8991_0.4845_0.8487.png
                gene_name: HIPK3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 44 percent done.
HIST1H1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
Cons ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
HIST1H1B   10000 perm   2 sec   (5955 perm/sec)   p_kst 1.788000e-01   p_cons 9.492000e-01   p_joint 4.391000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H1B.4_685_10000_0.1788_0.9492_0.4391.png
                gene_name: HIST1H1B
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
HIST1H1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
HIST1H1D   10000 perm   2 sec   (6329 perm/sec)   p_kst 6.530000e-02   p_cons 3.928000e-01   p_joint 1.484000e-01

Joint ci ratio: 6.287981e-02	ci left: 1.575597e-01	ci right 1.678386e-01	k: 3253	n:20000
Cons ci ratio: 3.531606e-02	ci left: 3.744118e-01	ci right 3.879228e-01	k: 7623	n:20000
KS ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
HIST1H1D   20000 perm   4 sec   (5510 perm/sec)   p_kst 6.775000e-02   p_cons 3.811500e-01   p_joint 1.626500e-01

Joint ci ratio: 6.307267e-02	ci left: 1.104574e-01	ci right 1.176842e-01	k: 3421	n:30000
Cons ci ratio: 2.893957e-02	ci left: 3.739708e-01	ci right 3.849859e-01	k: 11384	n:30000
KS ci ratio: 8.463514e-02	ci left: 6.390207e-02	ci right 6.958219e-02	k: 2001	n:30000
HIST1H1D   30000 perm   6 sec   (5198 perm/sec)   p_kst 6.670000e-02   p_cons 3.794667e-01   p_joint 1.140333e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H1D.4_670_30000_0.0667_0.37947_0.11403.png
                gene_name: HIST1H1D
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
HIST1H1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
Cons ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
KS ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
HIST1H1E   10000 perm   2 sec   (6093 perm/sec)   p_kst 8.751000e-01   p_cons 2.814000e-01   p_joint 6.666000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H1E.4_664_10000_0.8751_0.2814_0.6666.png
                gene_name: HIST1H1E
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 51 percent done.
HIST1H2BC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
Cons ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
KS ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
HIST1H2BC   10000 perm   2 sec   (6076 perm/sec)   p_kst 2.325000e-01   p_cons 1.747000e-01   p_joint 2.453000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BC.4_385_10000_0.2325_0.1747_0.2453.png
                gene_name: HIST1H2BC
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 53 percent done.
HIST1H2BJ
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
KS ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
HIST1H2BJ   10000 perm   2 sec   (6447 perm/sec)   p_kst 1.681000e-01   p_cons 8.501000e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BJ.3_385_10000_0.1681_0.8501_0.2467.png
                gene_name: HIST1H2BJ
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 56 percent done.
HERC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
Cons ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
HERC3   10000 perm   2 sec   (4791 perm/sec)   p_kst 2.440000e-02   p_cons 1.127000e-01   p_joint 2.140000e-02

Joint ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
HERC3   20000 perm   5 sec   (4321 perm/sec)   p_kst 2.580000e-02   p_cons 1.156000e-01   p_joint 2.345000e-02

Joint ci ratio: 1.863617e-01	ci left: 1.317781e-02	ci right 1.591739e-02	k: 435	n:30000
Cons ci ratio: 6.249690e-02	ci left: 1.122984e-01	ci right 1.195762e-01	k: 3477	n:30000
KS ci ratio: 1.415290e-01	ci left: 2.316622e-02	ci right 2.672660e-02	k: 747	n:30000
HERC3   30000 perm   7 sec   (4152 perm/sec)   p_kst 2.490000e-02   p_cons 1.159000e-01   p_joint 1.450000e-02

Joint ci ratio: 9.416439e-02	ci left: 3.956634e-02	ci right 4.350057e-02	k: 1660	n:40000
Cons ci ratio: 5.415930e-02	ci left: 1.126550e-01	ci right 1.189509e-01	k: 4631	n:40000
KS ci ratio: 1.220878e-01	ci left: 2.358907e-02	ci right 2.668039e-02	k: 1004	n:40000
HERC3   40000 perm   10 sec   (4038 perm/sec)   p_kst 2.510000e-02   p_cons 1.157750e-01   p_joint 4.150000e-02

Joint ci ratio: 1.090321e-01	ci left: 2.382436e-02	ci right 2.659114e-02	k: 1259	n:50000
Cons ci ratio: 4.840383e-02	ci left: 1.131461e-01	ci right 1.187785e-01	k: 5797	n:50000
KS ci ratio: 1.098850e-01	ci left: 2.345452e-02	ci right 2.620103e-02	k: 1240	n:50000
HERC3   50000 perm   13 sec   (3926 perm/sec)   p_kst 2.480000e-02   p_cons 1.159400e-01   p_joint 2.518000e-02

Joint ci ratio: 1.064530e-01	ci left: 2.092230e-02	ci right 2.329091e-02	k: 1325	n:60000
Cons ci ratio: 4.396734e-02	ci left: 1.144054e-01	ci right 1.195651e-01	k: 7018	n:60000
KS ci ratio: 9.949866e-02	ci left: 2.396058e-02	ci right 2.648563e-02	k: 1512	n:60000
HERC3   60000 perm   16 sec   (3844 perm/sec)   p_kst 2.520000e-02   p_cons 1.169667e-01   p_joint 2.208333e-02

Joint ci ratio: 9.081137e-02	ci left: 2.474985e-02	ci right 2.711824e-02	k: 1814	n:70000
Cons ci ratio: 4.079291e-02	ci left: 1.141605e-01	ci right 1.189285e-01	k: 8157	n:70000
KS ci ratio: 9.201551e-02	ci left: 2.410736e-02	ci right 2.644650e-02	k: 1768	n:70000
HERC3   70000 perm   19 sec   (3738 perm/sec)   p_kst 2.525714e-02   p_cons 1.165286e-01   p_joint 2.591429e-02

Outputting figure to mutsig2_images.part000000000078/HERC3.3_3249_70000_0.025257_0.11653_0.025914.png
                gene_name: HERC3
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 58 percent done.
HERPUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
HERPUD2   10000 perm   2 sec   (6183 perm/sec)   p_kst 5.500000e-02   p_cons 5.305000e-01   p_joint 2.603000e-01

Joint ci ratio: 6.751176e-02	ci left: 1.393584e-01	ci right 1.491453e-01	k: 2884	n:20000
Cons ci ratio: 2.502776e-02	ci left: 5.439244e-01	ci right 5.577608e-01	k: 11017	n:20000
KS ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
HERPUD2   20000 perm   4 sec   (5316 perm/sec)   p_kst 5.600000e-02   p_cons 5.508500e-01   p_joint 1.442000e-01

Joint ci ratio: 5.823041e-02	ci left: 1.273987e-01	ci right 1.350728e-01	k: 3936	n:30000
Cons ci ratio: 2.042520e-02	ci left: 5.454503e-01	ci right 5.567398e-01	k: 16533	n:30000
KS ci ratio: 9.363095e-02	ci left: 5.260970e-02	ci right 5.781019e-02	k: 1655	n:30000
HERPUD2   30000 perm   6 sec   (5006 perm/sec)   p_kst 5.516667e-02   p_cons 5.511000e-01   p_joint 1.312000e-01

Outputting figure to mutsig2_images.part000000000078/HERPUD2.3_1253_30000_0.055167_0.5511_0.1312.png
                gene_name: HERPUD2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
HEY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
Cons ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
KS ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
HEY1   10000 perm   2 sec   (6115 perm/sec)   p_kst 3.112000e-01   p_cons 1.799000e-01   p_joint 5.545000e-01

Outputting figure to mutsig2_images.part000000000078/HEY1.3_947_10000_0.3112_0.1799_0.5545.png
                gene_name: HEY1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 62 percent done.
HHIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
HHIPL1   10000 perm   2 sec   (5436 perm/sec)   p_kst 2.160000e-02   p_cons 2.948000e-01   p_joint 3.930000e-02

Joint ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
Cons ci ratio: 4.311436e-02	ci left: 2.861015e-01	ci right 2.987588e-01	k: 5848	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
HHIPL1   20000 perm   4 sec   (4740 perm/sec)   p_kst 2.060000e-02   p_cons 2.924000e-01   p_joint 8.370000e-02

Joint ci ratio: 1.035385e-01	ci left: 4.323426e-02	ci right 4.798758e-02	k: 1367	n:30000
Cons ci ratio: 3.512496e-02	ci left: 2.881849e-01	ci right 2.985218e-01	k: 8800	n:30000
KS ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
HHIPL1   30000 perm   7 sec   (4493 perm/sec)   p_kst 2.066667e-02   p_cons 2.933333e-01   p_joint 4.556667e-02

Joint ci ratio: 7.287801e-02	ci left: 6.498660e-02	ci right 6.992642e-02	k: 2697	n:40000
Cons ci ratio: 3.096477e-02	ci left: 2.815996e-01	ci right 2.904815e-01	k: 11441	n:40000
KS ci ratio: 1.340683e-01	ci left: 1.952050e-02	ci right 2.234965e-02	k: 836	n:40000
HHIPL1   40000 perm   9 sec   (4342 perm/sec)   p_kst 2.090000e-02   p_cons 2.860250e-01   p_joint 6.742500e-02

Joint ci ratio: 6.751635e-02	ci left: 6.102358e-02	ci right 6.530731e-02	k: 3157	n:50000
Cons ci ratio: 2.703460e-02	ci left: 2.920007e-01	ci right 3.000230e-01	k: 14800	n:50000
KS ci ratio: 1.200465e-01	ci left: 1.962519e-02	ci right 2.215087e-02	k: 1043	n:50000
HHIPL1   50000 perm   12 sec   (4215 perm/sec)   p_kst 2.086000e-02   p_cons 2.960000e-01   p_joint 6.314000e-02

Joint ci ratio: 6.241631e-02	ci left: 5.975481e-02	ci right 6.362105e-02	k: 3700	n:60000
Cons ci ratio: 2.466057e-02	ci left: 2.926645e-01	ci right 2.999885e-01	k: 17779	n:60000
KS ci ratio: 1.095782e-01	ci left: 1.973783e-02	ci right 2.204217e-02	k: 1252	n:60000
HHIPL1   60000 perm   15 sec   (4113 perm/sec)   p_kst 2.086667e-02   p_cons 2.963167e-01   p_joint 6.166667e-02

Joint ci ratio: 6.303310e-02	ci left: 5.070441e-02	ci right 5.401853e-02	k: 3664	n:70000
Cons ci ratio: 2.285892e-02	ci left: 2.924346e-01	ci right 2.992109e-01	k: 20707	n:70000
KS ci ratio: 1.001571e-01	ci left: 2.034070e-02	ci right 2.249923e-02	k: 1498	n:70000
HHIPL1   70000 perm   18 sec   (4000 perm/sec)   p_kst 2.140000e-02   p_cons 2.958143e-01   p_joint 5.234286e-02

Joint ci ratio: 7.567770e-02	ci left: 3.122060e-02	ci right 3.368846e-02	k: 2595	n:80000
Cons ci ratio: 2.137890e-02	ci left: 2.927258e-01	ci right 2.990640e-01	k: 23671	n:80000
KS ci ratio: 9.324841e-02	ci left: 2.060376e-02	ci right 2.263114e-02	k: 1728	n:80000
HHIPL1   80000 perm   20 sec   (3914 perm/sec)   p_kst 2.160000e-02   p_cons 2.958875e-01   p_joint 3.243750e-02

Outputting figure to mutsig2_images.part000000000078/HHIPL1.3_2486_80000_0.0216_0.29589_0.032438.png
                gene_name: HHIPL1
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 64 percent done.
HHLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
Cons ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
KS ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
HHLA2   10000 perm   2 sec   (5805 perm/sec)   p_kst 1.964000e-01   p_cons 7.940000e-01   p_joint 3.860000e-01

Outputting figure to mutsig2_images.part000000000078/HHLA2.3_1277_10000_0.1964_0.794_0.386.png
                gene_name: HHLA2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 67 percent done.
HINFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
KS ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
HINFP   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.488000e-01   p_cons 8.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HINFP.3_1590_10000_0.7488_0.8224_1.png
                gene_name: HINFP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
HIST1H2AC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
KS ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
HIST1H2AC   10000 perm   2 sec   (6438 perm/sec)   p_kst 3.223000e-01   p_cons 2.289000e-01   p_joint 4.196000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AC.3_397_10000_0.3223_0.2289_0.4196.png
                gene_name: HIST1H2AC
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 71 percent done.
HIST1H2BH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
HIST1H2BH   10000 perm   1 sec   (7246 perm/sec)   p_kst 9.697000e-01   p_cons 6.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H2BH.3_385_10000_0.9697_0.6193_1.png
                gene_name: HIST1H2BH
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
HIST1H2BI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
HIST1H2BI   10000 perm   1 sec   (6831 perm/sec)   p_kst 6.512000e-01   p_cons 2.333000e-01   p_joint 6.386000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BI.3_385_10000_0.6512_0.2333_0.6386.png
                gene_name: HIST1H2BI
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
HERPUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
Cons ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
KS ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
HERPUD1   10000 perm   2 sec   (6649 perm/sec)   p_kst 3.788000e-01   p_cons 3.868000e-01   p_joint 4.648000e-01

Outputting figure to mutsig2_images.part000000000078/HERPUD1.2_1208_10000_0.3788_0.3868_0.4648.png
                gene_name: HERPUD1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 78 percent done.
HEXDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
Cons ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
KS ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
HEXDC   10000 perm   2 sec   (6153 perm/sec)   p_kst 6.986000e-01   p_cons 5.228000e-01   p_joint 7.359000e-01

Outputting figure to mutsig2_images.part000000000078/HEXDC.2_1802_10000_0.6986_0.5228_0.7359.png
                gene_name: HEXDC
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 80 percent done.
HEXIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
Cons ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
HEXIM1   10000 perm   1 sec   (6678 perm/sec)   p_kst 6.514000e-01   p_cons 8.380000e-02   p_joint 3.389000e-01

Joint ci ratio: 4.445940e-02	ci left: 2.736357e-01	ci right 2.861284e-01	k: 5597	n:20000
Cons ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
KS ci ratio: 2.054505e-02	ci left: 6.387242e-01	ci right 6.520335e-01	k: 12908	n:20000
HEXIM1   20000 perm   3 sec   (5731 perm/sec)   p_kst 6.454000e-01   p_cons 8.070000e-02   p_joint 2.798500e-01

Outputting figure to mutsig2_images.part000000000078/HEXIM1.2_1084_20000_0.6454_0.0807_0.27985.png
                gene_name: HEXIM1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 82 percent done.
HGFAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
HGFAC   10000 perm   2 sec   (5788 perm/sec)   p_kst 3.255000e-01   p_cons 9.775000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000078/HGFAC.2_2024_10000_0.3255_0.9775_0.5716.png
                gene_name: HGFAC
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 84 percent done.
HINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
Cons ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
KS ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
HINT1   10000 perm   1 sec   (7214 perm/sec)   p_kst 2.482000e-01   p_cons 8.076000e-01   p_joint 8.187000e-01

Outputting figure to mutsig2_images.part000000000078/HINT1.2_393_10000_0.2482_0.8076_0.8187.png
                gene_name: HINT1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 87 percent done.
HIP1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
Cons ci ratio: 7.839608e-04	ci left: 9.991235e-01	ci right 9.999381e-01	k: 9997	n:10000
KS ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
HIP1R   10000 perm   2 sec   (5042 perm/sec)   p_kst 7.093000e-01   p_cons 9.997000e-01   p_joint 8.045000e-01

Outputting figure to mutsig2_images.part000000000078/HIP1R.2_3335_10000_0.7093_0.9997_0.8045.png
                gene_name: HIP1R
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 89 percent done.
HIST1H1T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
Cons ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
KS ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
HIST1H1T   10000 perm   2 sec   (6662 perm/sec)   p_kst 5.997000e-01   p_cons 3.472000e-01   p_joint 4.553000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H1T.2_628_10000_0.5997_0.3472_0.4553.png
                gene_name: HIST1H1T
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 91 percent done.
HIST1H2AA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
KS ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
HIST1H2AA   10000 perm   1 sec   (7322 perm/sec)   p_kst 5.550000e-02   p_cons 3.789000e-01   p_joint 1

Joint ci ratio: 5.047417e-02	ci left: 2.258174e-01	ci right 2.375607e-01	k: 4633	n:20000
Cons ci ratio: 3.522268e-02	ci left: 3.756574e-01	ci right 3.891768e-01	k: 7648	n:20000
KS ci ratio: 1.144539e-01	ci left: 5.222078e-02	ci right 5.860924e-02	k: 1107	n:20000
HIST1H2AA   20000 perm   3 sec   (6146 perm/sec)   p_kst 5.535000e-02   p_cons 3.824000e-01   p_joint 2.316500e-01

Joint ci ratio: 3.099669e-02	ci left: 3.423092e-01	ci right 3.531203e-01	k: 10431	n:30000
Cons ci ratio: 2.890683e-02	ci left: 3.745026e-01	ci right 3.855206e-01	k: 11400	n:30000
KS ci ratio: 9.259969e-02	ci left: 5.375070e-02	ci right 5.900230e-02	k: 1690	n:30000
HIST1H2AA   30000 perm   5 sec   (5777 perm/sec)   p_kst 5.633333e-02   p_cons 3.800000e-01   p_joint 3.477000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AA.2_400_30000_0.056333_0.38_0.3477.png
                gene_name: HIST1H2AA
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 93 percent done.
HIST1H2AJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
Cons ci ratio: 1.300512e-02	ci left: 8.948764e-01	ci right 9.066889e-01	k: 9009	n:10000
KS ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
HIST1H2AJ   10000 perm   1 sec   (6866 perm/sec)   p_kst 6.458000e-01   p_cons 9.009000e-01   p_joint 7.860000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AJ.2_391_10000_0.6458_0.9009_0.786.png
                gene_name: HIST1H2AJ
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 96 percent done.
HIST1H2AL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
Cons ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
HIST1H2AL   10000 perm   1 sec   (6898 perm/sec)   p_kst 4.910000e-02   p_cons 6.458000e-01   p_joint 2.278000e-01

Joint ci ratio: 6.242218e-02	ci left: 1.595342e-01	ci right 1.698635e-01	k: 3293	n:20000
Cons ci ratio: 2.055627e-02	ci left: 6.384732e-01	ci right 6.517846e-01	k: 12903	n:20000
KS ci ratio: 1.210749e-01	ci left: 4.677729e-02	ci right 5.285444e-02	k: 995	n:20000
HIST1H2AL   20000 perm   3 sec   (5921 perm/sec)   p_kst 4.975000e-02   p_cons 6.451500e-01   p_joint 1.646500e-01

Joint ci ratio: 5.069776e-02	ci left: 1.619374e-01	ci right 1.703940e-01	k: 4984	n:30000
Cons ci ratio: 1.673247e-02	ci left: 6.411266e-01	ci right 6.519783e-01	k: 19397	n:30000
KS ci ratio: 9.920791e-02	ci left: 4.700745e-02	ci right 5.194694e-02	k: 1483	n:30000
HIST1H2AL   30000 perm   5 sec   (5568 perm/sec)   p_kst 4.943333e-02   p_cons 6.465667e-01   p_joint 1.661333e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AL.2_397_30000_0.049433_0.64657_0.16613.png
                gene_name: HIST1H2AL
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 98 percent done.
HIST1H2BF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
HIST1H2BF   10000 perm   2 sec   (4872 perm/sec)   p_kst 7.892000e-01   p_cons 4.302000e-01   p_joint 7.169000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BF.2_385_10000_0.7892_0.4302_0.7169.png
                gene_name: HIST1H2BF
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000078
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 78 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 4422012: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000079> was used as the working directory.
Started at Wed Oct 24 17:52:03 2012
Results reported at Wed Oct 24 18:00:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000079.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000079.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 79  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000079.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    550.72 sec.
    Max Memory :      5236 MB
    Max Swap   :      7699 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
79
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 79
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 79: processing genes 7058 - 7147
Calculating significance of each gene.
Using projection method.
7058	HIST1H2BK	1
7059	HIST1H2BL	3.930982e-01
7060	HIST1H2BM	5.279954e-01
7061	HIST1H2BN	5.873113e-01
7062	HIST1H2BO	1
7063	HIST1H3A	2.590084e-01
7064	HIST1H3B	9.064550e-02
7065	HIST1H3C	5.971680e-01
7066	HIST1H3D	2.136560e-01
7067	HIST1H3E	1
7068	HIST1H3F	9.552618e-02
7069	HIST1H3G	5.811394e-02
7070	HIST1H3H	2.095456e-01
7071	HIST1H3I	7.247882e-01
7072	HIST1H3J	5.217493e-01
7073	HIST1H4A	1
7074	HIST1H4B	6.963427e-02
7075	HIST1H4C	1
7076	HIST1H4D	4.517702e-01
7077	HIST1H4E	7.798914e-02
7078	HIST1H4F	6.037867e-01
7079	HIST1H4G	1
7080	HIST1H4H	1.050396e-01
7081	HIST1H4I	3.488381e-02
7082	HIST1H4J	2.408345e-01
7083	HIST1H4K	1
7084	HIST1H4L	5.057737e-01
7085	HIST2H2AB	4.264398e-01
7086	HIST2H2AC	3.492790e-01
7087	HIST2H2BE	7.239008e-02
7088	HIST2H2BF	1
7089	HIST2H3D	4.841860e-01
7090	HIST3H2A	1
7091	HIST3H2BB	1
7092	HIST3H3	1
7093	HIST4H4	6.215910e-01
7094	HIVEP1	9.999986e-01
7095	HIVEP2	9.998834e-01
7096	HIVEP3	8.130360e-01
7097	HJURP	2.706813e-01
7098	HK1	1
7099	HK2	4.011882e-01
7100	HK3	5.527191e-01
7101	HKDC1	9.858479e-01
7102	HKR1	2.215229e-01
7103	HLA-A	6.198554e-01
7104	HLA-B	6.212978e-01
7105	HLA-C	4.550337e-01
7106	HLA-DMA	5.413604e-01
7107	HLA-DMB	6.995206e-01
7108	HLA-DOA	4.290712e-01
7109	HLA-DOB	7.943587e-01
7110	HLA-DPA1	5.732509e-01
7111	HLA-DPB1	1
7112	HLA-DQA1	1
7113	HLA-DQA2	6.233997e-01
7114	HLA-DQB1	1
7115	HLA-DRA	1
7116	HLA-DRB1	1
7117	HLA-DRB5	1
7118	HLA-E	1
7119	HLA-F	1
7120	HLA-G	7.704574e-01
7121	HLCS	1
7122	HLF	7.855270e-01
7123	HLTF	3.571969e-01
7124	HLX	5.102524e-02
7125	HM13	1
7126	HMBOX1	1
7127	HMBS	7.625229e-01
7128	HMCN1	1
7129	HMG20A	9.114528e-01
7130	HMG20B	1
7131	HMGA1	1
7132	HMGA2	3.224526e-03
7133	HMGB1	1
7134	HMGB2	7.421739e-01
7135	HMGB3	2.385285e-01
7136	HMGB4	1.705380e-01
7137	HMGCL	1
7138	HMGCLL1	4.695724e-02
7139	HMGCR	6.423813e-01
7140	HMGCS1	2.903646e-01
7141	HMGCS2	3.761823e-01
7142	HMGN1	1
7143	HMGN2	1
7144	HMGN3	4.728939e-01
7145	HMGN4	1.788125e-01
7146	HMGN5	1
7147	HMGXB4	7.462447e-01
Done

Running MutSig 2:
Scatter job 79: processing genes 7058 - 7147
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HMCN1
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
Cons ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
KS ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
HMCN1   10000 perm   5 sec   (2077 perm/sec)   p_kst 2.429000e-01   p_cons 1.920000e-02   p_joint 2.770000e-02

Joint ci ratio: 1.411110e-01	ci left: 3.452303e-02	ci right 3.981263e-02	k: 742	n:20000
Cons ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
KS ci ratio: 4.863210e-02	ci left: 2.392006e-01	ci right 2.511736e-01	k: 4903	n:20000
HMCN1   20000 perm   12 sec   (1641 perm/sec)   p_kst 2.451500e-01   p_cons 2.595000e-02   p_joint 3.710000e-02

Joint ci ratio: 1.411425e-01	ci left: 2.329494e-02	ci right 2.686451e-02	k: 751	n:30000
Cons ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
KS ci ratio: 3.957620e-02	ci left: 2.415319e-01	ci right 2.513172e-01	k: 7392	n:30000
HMCN1   30000 perm   17 sec   (1717 perm/sec)   p_kst 2.464000e-01   p_cons 2.570000e-02   p_joint 2.503333e-02

Joint ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
Cons ci ratio: 1.209204e-01	ci left: 2.404998e-02	ci right 2.716941e-02	k: 1023	n:40000
KS ci ratio: 3.396164e-02	ci left: 2.455883e-01	ci right 2.540980e-01	k: 9993	n:40000
HMCN1   40000 perm   23 sec   (1750 perm/sec)   p_kst 2.498250e-01   p_cons 2.557500e-02   p_joint 2.722500e-02

Joint ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
Cons ci ratio: 1.086348e-01	ci left: 2.399958e-02	ci right 2.677590e-02	k: 1268	n:50000
KS ci ratio: 3.046482e-02	ci left: 2.449556e-01	ci right 2.525536e-01	k: 12437	n:50000
HMCN1   50000 perm   28 sec   (1763 perm/sec)   p_kst 2.487400e-01   p_cons 2.536000e-02   p_joint 2.532000e-02

Joint ci ratio: 1.015127e-01	ci left: 2.301764e-02	ci right 2.549534e-02	k: 1454	n:60000
Cons ci ratio: 9.983764e-02	ci left: 2.379797e-02	ci right 2.631493e-02	k: 1502	n:60000
KS ci ratio: 2.788707e-02	ci left: 2.442665e-01	ci right 2.511913e-01	k: 14863	n:60000
HMCN1   60000 perm   34 sec   (1763 perm/sec)   p_kst 2.477167e-01   p_cons 2.503333e-02   p_joint 2.423333e-02

Joint ci ratio: 8.608236e-02	ci left: 2.753152e-02	ci right 3.002203e-02	k: 2013	n:70000
Cons ci ratio: 9.236429e-02	ci left: 2.392583e-02	ci right 2.625662e-02	k: 1755	n:70000
KS ci ratio: 2.584054e-02	ci left: 2.442068e-01	ci right 2.506141e-01	k: 17318	n:70000
HMCN1   70000 perm   40 sec   (1761 perm/sec)   p_kst 2.474000e-01   p_cons 2.507143e-02   p_joint 2.875714e-02

Outputting figure to mutsig2_images.part000000000079/HMCN1.52_17336_70000_0.2474_0.025071_0.028757.png
                gene_name: HMCN1
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 2 percent done.
HIVEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
Cons ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
HIVEP3   10000 perm   3 sec   (3792 perm/sec)   p_kst 4.382000e-01   p_cons 4.874000e-01   p_joint 5.440000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP3.17_7245_10000_0.4382_0.4874_0.544.png
                gene_name: HIVEP3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 5 percent done.
HIVEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
Cons ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
KS ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
HIVEP2   10000 perm   3 sec   (3410 perm/sec)   p_kst 7.540000e-01   p_cons 7.062000e-01   p_joint 9.081000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP2.14_7365_10000_0.754_0.7062_0.9081.png
                gene_name: HIVEP2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 7 percent done.
HK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
HK3   10000 perm   2 sec   (4696 perm/sec)   p_kst 4.834000e-01   p_cons 2.432000e-01   p_joint 4.777000e-01

Outputting figure to mutsig2_images.part000000000079/HK3.12_2844_10000_0.4834_0.2432_0.4777.png
                gene_name: HK3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 10 percent done.
HIVEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
HIVEP1   10000 perm   3 sec   (3498 perm/sec)   p_kst 8.771000e-01   p_cons 9.240000e-02   p_joint 2.989000e-01

Joint ci ratio: 4.202527e-02	ci left: 2.967344e-01	ci right 3.095229e-01	k: 6062	n:20000
Cons ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
KS ci ratio: 1.083145e-02	ci left: 8.627736e-01	ci right 8.722193e-01	k: 17351	n:20000
HIVEP1   20000 perm   6 sec   (3227 perm/sec)   p_kst 8.675500e-01   p_cons 9.045000e-02   p_joint 3.031000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP1.9_8189_20000_0.86755_0.09045_0.3031.png
                gene_name: HIVEP1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 12 percent done.
HK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
HK2   10000 perm   2 sec   (4861 perm/sec)   p_kst 9.094000e-01   p_cons 4.360000e-02   p_joint 1.206000e-01

Joint ci ratio: 5.388313e-02	ci left: 2.035806e-01	ci right 2.149041e-01	k: 4184	n:20000
Cons ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
KS ci ratio: 7.364404e-03	ci left: 9.305729e-01	ci right 9.375002e-01	k: 18682	n:20000
HK2   20000 perm   5 sec   (4400 perm/sec)   p_kst 9.341000e-01   p_cons 4.590000e-02   p_joint 2.092000e-01

Joint ci ratio: 4.854636e-02	ci left: 1.741814e-01	ci right 1.828809e-01	k: 5355	n:30000
Cons ci ratio: 1.030266e-01	ci left: 4.365689e-02	ci right 4.843152e-02	k: 1380	n:30000
KS ci ratio: 6.074053e-03	ci left: 9.299420e-01	ci right 9.356405e-01	k: 27985	n:30000
HK2   30000 perm   7 sec   (4216 perm/sec)   p_kst 9.328333e-01   p_cons 4.600000e-02   p_joint 1.785000e-01

Joint ci ratio: 3.685974e-02	ci left: 2.163457e-01	ci right 2.244949e-01	k: 8816	n:40000
Cons ci ratio: 8.877844e-02	ci left: 4.440804e-02	ci right 4.855812e-02	k: 1858	n:40000
KS ci ratio: 5.317862e-03	ci left: 9.289297e-01	ci right 9.339074e-01	k: 37258	n:40000
HK2   40000 perm   10 sec   (4102 perm/sec)   p_kst 9.314500e-01   p_cons 4.645000e-02   p_joint 2.204000e-01

Outputting figure to mutsig2_images.part000000000079/HK2.9_2826_40000_0.93145_0.04645_0.2204.png
                gene_name: HK2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 14 percent done.
HLTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
KS ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
HLTF   10000 perm   2 sec   (4621 perm/sec)   p_kst 8.055000e-01   p_cons 7.519000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLTF.9_3130_10000_0.8055_0.7519_1.png
                gene_name: HLTF
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
HJURP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
HJURP   10000 perm   2 sec   (5179 perm/sec)   p_kst 1.479000e-01   p_cons 8.483000e-01   p_joint 2.385000e-01

Outputting figure to mutsig2_images.part000000000079/HJURP.8_2283_10000_0.1479_0.8483_0.2385.png
                gene_name: HJURP
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 19 percent done.
HIST2H2AC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
Cons ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
KS ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
HIST2H2AC   10000 perm   2 sec   (6317 perm/sec)   p_kst 3.900000e-02   p_cons 7.328000e-01   p_joint 1.009000e-01

Joint ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
Cons ci ratio: 1.661998e-02	ci left: 7.293787e-01	ci right 7.416528e-01	k: 14711	n:20000
KS ci ratio: 1.327092e-01	ci left: 3.901975e-02	ci right 4.461445e-02	k: 835	n:20000
HIST2H2AC   20000 perm   4 sec   (5589 perm/sec)   p_kst 4.175000e-02   p_cons 7.355500e-01   p_joint 8.300000e-02

Joint ci ratio: 7.727441e-02	ci left: 7.593914e-02	ci right 8.207602e-02	k: 2369	n:30000
Cons ci ratio: 1.365918e-02	ci left: 7.279549e-01	ci right 7.380000e-01	k: 21990	n:30000
KS ci ratio: 1.080431e-01	ci left: 3.975795e-02	ci right 4.433128e-02	k: 1260	n:30000
HIST2H2AC   30000 perm   6 sec   (5319 perm/sec)   p_kst 4.200000e-02   p_cons 7.330000e-01   p_joint 7.896667e-02

Joint ci ratio: 6.190854e-02	ci left: 8.827269e-02	ci right 9.393683e-02	k: 3643	n:40000
Cons ci ratio: 1.217414e-02	ci left: 7.171791e-01	ci right 7.259887e-01	k: 28864	n:40000
KS ci ratio: 9.392864e-02	ci left: 3.976182e-02	ci right 4.370506e-02	k: 1668	n:40000
HIST2H2AC   40000 perm   8 sec   (5141 perm/sec)   p_kst 4.170000e-02   p_cons 7.216000e-01   p_joint 9.107500e-02

Outputting figure to mutsig2_images.part000000000079/HIST2H2AC.6_394_40000_0.0417_0.7216_0.091075.png
                gene_name: HIST2H2AC
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 21 percent done.
HKDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
Cons ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
HKDC1   10000 perm   2 sec   (4992 perm/sec)   p_kst 4.317000e-01   p_cons 6.865000e-01   p_joint 5.811000e-01

Outputting figure to mutsig2_images.part000000000079/HKDC1.6_2826_10000_0.4317_0.6865_0.5811.png
                gene_name: HKDC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 24 percent done.
HLX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
Cons ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
KS ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
HLX   10000 perm   2 sec   (5412 perm/sec)   p_kst 1.105000e-01   p_cons 4.620000e-02   p_joint 6.110000e-02

Joint ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
Cons ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
KS ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
HLX   20000 perm   4 sec   (4806 perm/sec)   p_kst 1.213500e-01   p_cons 4.195000e-02   p_joint 8.830000e-02

Joint ci ratio: 8.135220e-02	ci left: 6.890364e-02	ci right 7.477960e-02	k: 2154	n:30000
Cons ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
KS ci ratio: 6.070437e-02	ci left: 1.183165e-01	ci right 1.257568e-01	k: 3660	n:30000
HLX   30000 perm   7 sec   (4551 perm/sec)   p_kst 1.220000e-01   p_cons 4.670000e-02   p_joint 7.180000e-02

Joint ci ratio: 6.526540e-02	ci left: 8.001871e-02	ci right 8.544204e-02	k: 3308	n:40000
Cons ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
KS ci ratio: 5.258601e-02	ci left: 1.187582e-01	ci right 1.251967e-01	k: 4878	n:40000
HLX   40000 perm   9 sec   (4415 perm/sec)   p_kst 1.219500e-01   p_cons 4.280000e-02   p_joint 8.270000e-02

Outputting figure to mutsig2_images.part000000000079/HLX.6_1483_40000_0.12195_0.0428_0.0827.png
                gene_name: HLX
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 26 percent done.
HMGCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
HMGCS2   10000 perm   2 sec   (5276 perm/sec)   p_kst 2.060000e-02   p_cons 9.982000e-01   p_joint 7.930000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 1.256144e-03	ci left: 9.972776e-01	ci right 9.985708e-01	k: 19960	n:20000
KS ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
HMGCS2   20000 perm   4 sec   (4791 perm/sec)   p_kst 1.880000e-02   p_cons 9.980000e-01   p_joint 4.285000e-02

Joint ci ratio: 1.155139e-01	ci left: 3.482746e-02	ci right 3.912947e-02	k: 1108	n:30000
Cons ci ratio: 1.078638e-03	ci left: 9.971646e-01	ci right 9.982688e-01	k: 29933	n:30000
KS ci ratio: 1.640943e-01	ci left: 1.713322e-02	ci right 2.022766e-02	k: 559	n:30000
HMGCS2   30000 perm   7 sec   (4601 perm/sec)   p_kst 1.863333e-02   p_cons 9.977667e-01   p_joint 3.693333e-02

Joint ci ratio: 1.096258e-01	ci left: 2.927446e-02	ci right 3.269407e-02	k: 1238	n:40000
Cons ci ratio: 9.202768e-04	ci left: 9.973178e-01	ci right 9.982576e-01	k: 39913	n:40000
KS ci ratio: 1.422723e-01	ci left: 1.729850e-02	ci right 1.997203e-02	k: 744	n:40000
HMGCS2   40000 perm   9 sec   (4481 perm/sec)   p_kst 1.860000e-02   p_cons 9.978250e-01   p_joint 3.095000e-02

Joint ci ratio: 9.068996e-02	ci left: 3.438411e-02	ci right 3.767004e-02	k: 1800	n:50000
Cons ci ratio: 8.193727e-04	ci left: 9.973927e-01	ci right 9.982278e-01	k: 49892	n:50000
KS ci ratio: 1.294109e-01	ci left: 1.685270e-02	ci right 1.920373e-02	k: 900	n:50000
HMGCS2   50000 perm   11 sec   (4381 perm/sec)   p_kst 1.800000e-02   p_cons 9.978400e-01   p_joint 3.600000e-02

Joint ci ratio: 7.471350e-02	ci left: 4.222536e-02	ci right 4.551894e-02	k: 2631	n:60000
Cons ci ratio: 7.683450e-04	ci left: 9.973013e-01	ci right 9.980827e-01	k: 59863	n:60000
KS ci ratio: 1.192753e-01	ci left: 1.662762e-02	ci right 1.875273e-02	k: 1060	n:60000
HMGCS2   60000 perm   14 sec   (4276 perm/sec)   p_kst 1.766667e-02   p_cons 9.977167e-01   p_joint 4.385000e-02

Joint ci ratio: 7.881970e-02	ci left: 3.278177e-02	ci right 3.548560e-02	k: 2388	n:70000
Cons ci ratio: 7.024411e-04	ci left: 9.973935e-01	ci right 9.981071e-01	k: 69844	n:70000
KS ci ratio: 1.086034e-01	ci left: 1.727823e-02	ci right 1.927627e-02	k: 1278	n:70000
HMGCS2   70000 perm   17 sec   (4175 perm/sec)   p_kst 1.825714e-02   p_cons 9.977714e-01   p_joint 3.411429e-02

Joint ci ratio: 7.564758e-02	ci left: 3.124514e-02	ci right 3.371391e-02	k: 2597	n:80000
Cons ci ratio: 6.708285e-04	ci left: 9.973163e-01	ci right 9.979968e-01	k: 79814	n:80000
KS ci ratio: 1.020782e-01	ci left: 1.717527e-02	ci right 1.903491e-02	k: 1447	n:80000
HMGCS2   80000 perm   20 sec   (4093 perm/sec)   p_kst 1.808750e-02   p_cons 9.976750e-01   p_joint 3.246250e-02

Joint ci ratio: 7.155885e-02	ci left: 3.111082e-02	ci right 3.343057e-02	k: 2903	n:90000
Cons ci ratio: 6.334063e-04	ci left: 9.973293e-01	ci right 9.979713e-01	k: 89790	n:90000
KS ci ratio: 9.639104e-02	ci left: 1.717395e-02	ci right 1.892398e-02	k: 1623	n:90000
HMGCS2   90000 perm   22 sec   (4016 perm/sec)   p_kst 1.803333e-02   p_cons 9.976667e-01   p_joint 3.225556e-02

Outputting figure to mutsig2_images.part000000000079/HMGCS2.6_1563_90000_0.018033_0.99767_0.032256.png
                gene_name: HMGCS2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 29 percent done.
HKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.366378e-02	ci left: 2.660670e-01	ci right 2.836643e-01	k: 2748	n:10000
Cons ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
KS ci ratio: 4.600981e-02	ci left: 4.107992e-01	ci right 4.302471e-01	k: 4205	n:10000
HKR1   10000 perm   2 sec   (5773 perm/sec)   p_kst 4.205000e-01   p_cons 1.580000e-01   p_joint 2.748000e-01

Outputting figure to mutsig2_images.part000000000079/HKR1.5_1996_10000_0.4205_0.158_0.2748.png
                gene_name: HKR1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
HMGCLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
HMGCLL1   10000 perm   2 sec   (6145 perm/sec)   p_kst 1.256000e-01   p_cons 7.167000e-01   p_joint 2.774000e-01

Joint ci ratio: 5.376942e-02	ci left: 2.042736e-01	ci right 2.156109e-01	k: 4198	n:20000
Cons ci ratio: 1.751259e-02	ci left: 7.083860e-01	ci right 7.209516e-01	k: 14294	n:20000
KS ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
HMGCLL1   20000 perm   4 sec   (5478 perm/sec)   p_kst 1.302500e-01   p_cons 7.147000e-01   p_joint 2.099000e-01

Outputting figure to mutsig2_images.part000000000079/HMGCLL1.5_1153_20000_0.13025_0.7147_0.2099.png
                gene_name: HMGCLL1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 33 percent done.
HMGCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
Cons ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
KS ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
HMGCS1   10000 perm   2 sec   (5465 perm/sec)   p_kst 8.147000e-01   p_cons 1.206000e-01   p_joint 9.725000e-01

Joint ci ratio: 2.339783e-02	ci left: 5.770319e-01	ci right 5.907437e-01	k: 11678	n:20000
Cons ci ratio: 7.516773e-02	ci left: 1.151825e-01	ci right 1.242283e-01	k: 2393	n:20000
KS ci ratio: 1.366875e-02	ci left: 7.988336e-01	ci right 8.098778e-01	k: 16088	n:20000
HMGCS1   20000 perm   4 sec   (4911 perm/sec)   p_kst 8.044000e-01   p_cons 1.196500e-01   p_joint 5.839000e-01

Outputting figure to mutsig2_images.part000000000079/HMGCS1.5_1599_20000_0.8044_0.11965_0.5839.png
                gene_name: HMGCS1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 36 percent done.
HMGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
HMGB2   10000 perm   2 sec   (6398 perm/sec)   p_kst 8.858000e-01   p_cons 3.878000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HMGB2.4_646_10000_0.8858_0.3878_1.png
                gene_name: HMGB2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
HMGCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
Cons ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KS ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
HMGCR   10000 perm   2 sec   (5386 perm/sec)   p_kst 5.807000e-01   p_cons 2.660000e-02   p_joint 1.930000e-01

Joint ci ratio: 6.544430e-02	ci left: 1.470995e-01	ci right 1.571019e-01	k: 3041	n:20000
Cons ci ratio: 1.689838e-01	ci left: 2.398245e-02	ci right 2.845673e-02	k: 523	n:20000
KS ci ratio: 2.375108e-02	ci left: 5.697166e-01	ci right 5.834612e-01	k: 11532	n:20000
HMGCR   20000 perm   4 sec   (4826 perm/sec)   p_kst 5.766000e-01   p_cons 2.615000e-02   p_joint 1.520500e-01

Joint ci ratio: 6.132608e-02	ci left: 1.161786e-01	ci right 1.235619e-01	k: 3595	n:30000
Cons ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
KS ci ratio: 1.933884e-02	ci left: 5.723540e-01	ci right 5.835643e-01	k: 17339	n:30000
HMGCR   30000 perm   7 sec   (4605 perm/sec)   p_kst 5.779667e-01   p_cons 2.530000e-02   p_joint 1.198333e-01

Joint ci ratio: 4.058408e-02	ci left: 1.852727e-01	ci right 1.929725e-01	k: 7564	n:40000
Cons ci ratio: 1.224005e-01	ci left: 2.346781e-02	ci right 2.655168e-02	k: 999	n:40000
KS ci ratio: 1.678473e-02	ci left: 5.720405e-01	ci right 5.817484e-01	k: 23076	n:40000
HMGCR   40000 perm   9 sec   (4344 perm/sec)   p_kst 5.769000e-01   p_cons 2.497500e-02   p_joint 1.891000e-01

Joint ci ratio: 3.704856e-02	ci left: 1.795398e-01	ci right 1.863370e-01	k: 9146	n:50000
Cons ci ratio: 1.083722e-01	ci left: 2.411640e-02	ci right 2.689906e-02	k: 1274	n:50000
KS ci ratio: 1.499375e-02	ci left: 5.731760e-01	ci right 5.818550e-01	k: 28876	n:50000
HMGCR   50000 perm   12 sec   (4137 perm/sec)   p_kst 5.775200e-01   p_cons 2.548000e-02   p_joint 1.829200e-01

Joint ci ratio: 3.663172e-02	ci left: 1.573229e-01	ci right 1.632100e-01	k: 9615	n:60000
Cons ci ratio: 9.850138e-02	ci left: 2.444850e-02	ci right 2.699766e-02	k: 1542	n:60000
KS ci ratio: 1.369733e-02	ci left: 5.732019e-01	ci right 5.811240e-01	k: 34630	n:60000
HMGCR   60000 perm   15 sec   (4063 perm/sec)   p_kst 5.771667e-01   p_cons 2.570000e-02   p_joint 1.602500e-01

Outputting figure to mutsig2_images.part000000000079/HMGCR.4_2743_60000_0.57717_0.0257_0.16025.png
                gene_name: HMGCR
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
HIST1H3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
Cons ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
KS ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
HIST1H3B   10000 perm   1 sec   (6752 perm/sec)   p_kst 2.993000e-01   p_cons 4.789000e-01   p_joint 3.903000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H3B.3_415_10000_0.2993_0.4789_0.3903.png
                gene_name: HIST1H3B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
HIST1H3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
Cons ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KS ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
HIST1H3G   10000 perm   1 sec   (6761 perm/sec)   p_kst 2.808000e-01   p_cons 5.025000e-01   p_joint 3.669000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H3G.3_415_10000_0.2808_0.5025_0.3669.png
                gene_name: HIST1H3G
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 45 percent done.
HIST1H4I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
Cons ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
KS ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
HIST1H4I   10000 perm   2 sec   (5635 perm/sec)   p_kst 2.904000e-01   p_cons 7.901000e-01   p_joint 2.999000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H4I.3_316_10000_0.2904_0.7901_0.2999.png
                gene_name: HIST1H4I
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 48 percent done.
HIST2H2BE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
KS ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
HIST2H2BE   10000 perm   3 sec   (3493 perm/sec)   p_kst 8.940000e-01   p_cons 3.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST2H2BE.3_385_10000_0.894_0.3591_1.png
                gene_name: HIST2H2BE
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
HK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
HK1   10000 perm   2 sec   (4974 perm/sec)   p_kst 7.332000e-01   p_cons 5.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HK1.3_3004_10000_0.7332_0.5565_1.png
                gene_name: HK1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
HLA-B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
Cons ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
HLA-B   10000 perm   2 sec   (5423 perm/sec)   p_kst 2.666000e-01   p_cons 2.542000e-01   p_joint 2.157000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-B.3_1117_10000_0.2666_0.2542_0.2157.png
                gene_name: HLA-B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 55 percent done.
HLA-C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
KS ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
HLA-C   10000 perm   2 sec   (6371 perm/sec)   p_kst 1.578000e-01   p_cons 9.077000e-01   p_joint 2.598000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-C.3_1133_10000_0.1578_0.9077_0.2598.png
                gene_name: HLA-C
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 57 percent done.
HLA-DRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
KS ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
HLA-DRA   10000 perm   2 sec   (6597 perm/sec)   p_kst 8.183000e-01   p_cons 7.800000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLA-DRA.3_781_10000_0.8183_0.78_1.png
                gene_name: HLA-DRA
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
HMBS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
KS ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
HMBS   10000 perm   2 sec   (6206 perm/sec)   p_kst 2.053000e-01   p_cons 3.753000e-01   p_joint 3.968000e-01

Outputting figure to mutsig2_images.part000000000079/HMBS.3_1142_10000_0.2053_0.3753_0.3968.png
                gene_name: HMBS
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 62 percent done.
HMGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
Cons ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
KS ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
HMGA2   10000 perm   2 sec   (6563 perm/sec)   p_kst 1.963000e-01   p_cons 9.560000e-02   p_joint 2.421000e-01

Joint ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
Cons ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
KS ci ratio: 5.630889e-02	ci left: 1.895287e-01	ci right 2.005601e-01	k: 3900	n:20000
HMGA2   20000 perm   3 sec   (5722 perm/sec)   p_kst 1.950000e-01   p_cons 9.430000e-02   p_joint 1.240500e-01

Outputting figure to mutsig2_images.part000000000079/HMGA2.3_426_20000_0.195_0.0943_0.12405.png
                gene_name: HMGA2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
HIST1H3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
HIST1H3A   10000 perm   1 sec   (6952 perm/sec)   p_kst 9.698000e-01   p_cons 3.390000e-02   p_joint 3.230000e-02

Joint ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
Cons ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
KS ci ratio: 4.994194e-03	ci left: 9.660889e-01	ci right 9.709736e-01	k: 19372	n:20000
HIST1H3A   20000 perm   3 sec   (6030 perm/sec)   p_kst 9.686000e-01   p_cons 3.435000e-02   p_joint 3.265000e-02

Joint ci ratio: 1.225750e-01	ci left: 3.094255e-02	ci right 3.501522e-02	k: 988	n:30000
Cons ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
KS ci ratio: 4.038703e-03	ci left: 9.671479e-01	ci right 9.710939e-01	k: 29075	n:30000
HIST1H3A   30000 perm   5 sec   (5690 perm/sec)   p_kst 9.691667e-01   p_cons 3.456667e-02   p_joint 3.293333e-02

Joint ci ratio: 1.054390e-01	ci left: 3.163626e-02	ci right 3.518190e-02	k: 1335	n:40000
Cons ci ratio: 1.027255e-01	ci left: 3.331783e-02	ci right 3.695006e-02	k: 1404	n:40000
KS ci ratio: 3.451138e-03	ci left: 9.682299e-01	ci right 9.716014e-01	k: 38798	n:40000
HIST1H3A   40000 perm   7 sec   (5485 perm/sec)   p_kst 9.699500e-01   p_cons 3.510000e-02   p_joint 3.337500e-02

Joint ci ratio: 1.007618e-01	ci left: 2.789769e-02	ci right 3.087729e-02	k: 1468	n:50000
Cons ci ratio: 9.137639e-02	ci left: 3.387554e-02	ci right 3.713868e-02	k: 1774	n:50000
KS ci ratio: 3.133348e-03	ci left: 9.675048e-01	ci right 9.705605e-01	k: 48453	n:50000
HIST1H3A   50000 perm   9 sec   (5335 perm/sec)   p_kst 9.690600e-01   p_cons 3.548000e-02   p_joint 2.936000e-02

Joint ci ratio: 8.532306e-02	ci left: 3.253149e-02	ci right 3.544715e-02	k: 2038	n:60000
Cons ci ratio: 8.317237e-02	ci left: 3.421322e-02	ci right 3.719858e-02	k: 2141	n:60000
KS ci ratio: 2.840763e-03	ci left: 9.680588e-01	ci right 9.708289e-01	k: 58168	n:60000
HIST1H3A   60000 perm   12 sec   (5204 perm/sec)   p_kst 9.694667e-01   p_cons 3.568333e-02   p_joint 3.396667e-02

Outputting figure to mutsig2_images.part000000000079/HIST1H3A.2_415_60000_0.96947_0.035683_0.033967.png
                gene_name: HIST1H3A
               theta_stop: 0.085 
                    nperm: 60000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 67 percent done.
HIST1H3D
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 69 percent done.
HIST1H3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
KS ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
HIST1H3F   10000 perm   1 sec   (6979 perm/sec)   p_kst 7.076000e-01   p_cons 4.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H3F.2_415_10000_0.7076_0.4715_1.png
                gene_name: HIST1H3F
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
HIST1H3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
HIST1H3H   10000 perm   1 sec   (6808 perm/sec)   p_kst 1.132000e-01   p_cons 4.128000e-01   p_joint 2.413000e-01

Joint ci ratio: 1.194693e-02	ci left: 8.382378e-01	ci right 8.483622e-01	k: 16867	n:20000
Cons ci ratio: 3.369871e-02	ci left: 3.966902e-01	ci right 4.103379e-01	k: 8070	n:20000
KS ci ratio: 7.696846e-02	ci left: 1.103641e-01	ci right 1.192483e-01	k: 2295	n:20000
HIST1H3H   20000 perm   3 sec   (6001 perm/sec)   p_kst 1.147500e-01   p_cons 4.035000e-01   p_joint 8.433500e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H3H.2_415_20000_0.11475_0.4035_0.84335.png
                gene_name: HIST1H3H
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 74 percent done.
HIST1H4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.000262e-03	ci left: 9.455455e-01	ci right 9.541901e-01	k: 9500	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
HIST1H4B   10000 perm   1 sec   (6997 perm/sec)   p_kst 3.413000e-01   p_cons 9.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H4B.2_316_10000_0.3413_0.95_1.png
                gene_name: HIST1H4B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
HIST1H4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
KS ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
HIST1H4E   10000 perm   1 sec   (7327 perm/sec)   p_kst 2.524000e-01   p_cons 7.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H4E.2_316_10000_0.2524_0.7957_1.png
                gene_name: HIST1H4E
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
HIST1H4H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
KS ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
HIST1H4H   10000 perm   1 sec   (7373 perm/sec)   p_kst 6.977000e-01   p_cons 7.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H4H.2_316_10000_0.6977_0.7642_1.png
                gene_name: HIST1H4H
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
HIST3H2BB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
HIST3H2BB   10000 perm   1 sec   (6911 perm/sec)   p_kst 7.940000e-01   p_cons 3.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST3H2BB.2_385_10000_0.794_0.3339_1.png
                gene_name: HIST3H2BB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
HLA-A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
Cons ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
KS ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
HLA-A   10000 perm   2 sec   (6544 perm/sec)   p_kst 6.729000e-01   p_cons 8.694000e-01   p_joint 9.597000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-A.2_1130_10000_0.6729_0.8694_0.9597.png
                gene_name: HLA-A
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
HLA-DMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
KS ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
HLA-DMA   10000 perm   2 sec   (6639 perm/sec)   p_kst 6.769000e-01   p_cons 7.790000e-02   p_joint 1.012000e-01

Joint ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
Cons ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
KS ci ratio: 1.944367e-02	ci left: 6.636349e-01	ci right 6.767156e-01	k: 13404	n:20000
HLA-DMA   20000 perm   3 sec   (5858 perm/sec)   p_kst 6.702000e-01   p_cons 7.540000e-02   p_joint 9.580000e-02

Outputting figure to mutsig2_images.part000000000079/HLA-DMA.2_806_20000_0.6702_0.0754_0.0958.png
                gene_name: HLA-DMA
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.100 

Current progress: 88 percent done.
HLA-DOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
KS ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
HLA-DOA   10000 perm   1 sec   (6697 perm/sec)   p_kst 7.705000e-01   p_cons 9.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLA-DOA.2_773_10000_0.7705_0.9353_1.png
                gene_name: HLA-DOA
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
HLA-DPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928267e-02	ci left: 6.323123e-01	ci right 6.512050e-01	k: 6418	n:10000
Cons ci ratio: 3.351839e-02	ci left: 5.678475e-01	ci right 5.873073e-01	k: 5776	n:10000
KS ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
HLA-DPA1   10000 perm   1 sec   (6791 perm/sec)   p_kst 5.978000e-01   p_cons 5.776000e-01   p_joint 6.418000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DPA1.2_799_10000_0.5978_0.5776_0.6418.png
                gene_name: HLA-DPA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 93 percent done.
HMGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
HMGB3   10000 perm   1 sec   (6874 perm/sec)   p_kst 6.623000e-01   p_cons 5.582000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000079/HMGB3.2_619_10000_0.6623_0.5582_0.6995.png
                gene_name: HMGB3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 95 percent done.
HMGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
Cons ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
KS ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
HMGB4   10000 perm   1 sec   (6952 perm/sec)   p_kst 2.106000e-01   p_cons 1.052000e-01   p_joint 1.113000e-01

Joint ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
Cons ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
KS ci ratio: 5.389942e-02	ci left: 2.034816e-01	ci right 2.148031e-01	k: 4182	n:20000
HMGB4   20000 perm   3 sec   (6106 perm/sec)   p_kst 2.091000e-01   p_cons 1.075500e-01   p_joint 5.800000e-02

Joint ci ratio: 7.184772e-02	ci left: 8.701428e-02	ci right 9.353198e-02	k: 2707	n:30000
Cons ci ratio: 6.508654e-02	ci left: 1.043449e-01	ci right 1.113979e-01	k: 3235	n:30000
KS ci ratio: 4.355068e-02	ci left: 2.079815e-01	ci right 2.172742e-01	k: 6378	n:30000
HMGB4   30000 perm   5 sec   (5766 perm/sec)   p_kst 2.126000e-01   p_cons 1.078333e-01   p_joint 9.023333e-02

Outputting figure to mutsig2_images.part000000000079/HMGB4.2_565_30000_0.2126_0.10783_0.090233.png
                gene_name: HMGB4
               theta_stop: 0.072 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 98 percent done.
HMGXB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
Cons ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
KS ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
HMGXB4   10000 perm   2 sec   (6087 perm/sec)   p_kst 5.260000e-01   p_cons 3.945000e-01   p_joint 7.006000e-01

Outputting figure to mutsig2_images.part000000000079/HMGXB4.2_1846_10000_0.526_0.3945_0.7006.png
                gene_name: HMGXB4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000079
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 79 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 4422015: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000080> was used as the working directory.
Started at Wed Oct 24 17:52:22 2012
Results reported at Wed Oct 24 18:01:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000080.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000080.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 80  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000080.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    594.38 sec.
    Max Memory :      5177 MB
    Max Swap   :      7680 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
80
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 80
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 80: processing genes 7148 - 7238
Calculating significance of each gene.
Using projection method.
7148	HMHA1	1
7149	HMHB1	1
7150	HMMR	1
7151	HMOX1	2.665222e-01
7152	HMOX2	1
7153	HMP19	5.118512e-02
7154	HMSD	3.709147e-01
7155	HMX2	1
7156	HMX3	3.925101e-01
7157	HN1	1
7158	HN1L	6.048606e-01
7159	HNF1A	7.900085e-01
7160	HNF1B	8.491353e-01
7161	HNF4A	1
7162	HNF4G	5.720308e-01
7163	HNMT	6.354695e-01
7164	HNRNPA0	6.125107e-01
7165	HNRNPA1	6.373450e-01
7166	HNRNPA1L2	4.864706e-01
7167	HNRNPA2B1	2.206468e-01
7168	HNRNPA3	8.325505e-01
7169	HNRNPAB	1
7170	HNRNPC	1.394930e-01
7171	HNRNPCL1	1
7172	HNRNPD	1
7173	HNRNPF	1
7174	HNRNPH1	4.471871e-01
7175	HNRNPH2	6.874690e-01
7176	HNRNPH3	7.540907e-01
7177	HNRNPK	6.048116e-01
7178	HNRNPL	1
7179	HNRNPM	6.177450e-01
7180	HNRNPR	1
7181	HNRNPU	9.678370e-01
7182	HNRNPUL1	8.461027e-01
7183	HNRNPUL2	8.156437e-01
7184	HNRPDL	7.932302e-01
7185	HNRPLL	8.883948e-01
7186	HOMER1	6.152048e-01
7187	HOMER2	7.865743e-01
7188	HOMER3	1
7189	HOMEZ	7.821201e-01
7190	HOOK1	7.657306e-01
7191	HOOK2	9.949952e-01
7192	HOOK3	1.860724e-01
7193	HOPX	1.765000e-01
7194	HORMAD1	8.430427e-01
7195	HORMAD2	1
7196	HOXA1	1.629783e-01
7197	HOXA10	7.654575e-01
7198	HOXA11	5.161746e-01
7199	HOXA13	6.591264e-01
7200	HOXA2	3.676613e-02
7201	HOXA3	7.037427e-02
7202	HOXA4	6.099814e-01
7203	HOXA5	1.470622e-03
7204	HOXA6	5.846786e-01
7205	HOXA7	5.707387e-01
7206	HOXA9	2.126561e-02
7207	HOXB1	9.148900e-04
7208	HOXB13	8.535018e-01
7209	HOXB2	1
7210	HOXB3	2.973731e-04
In gene HOXB4 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 603     n = 1	mu =   7.03e-07
7211	HOXB4	9.061713e-02
7212	HOXB5	6.436100e-01
7213	HOXB6	5.830043e-01
7214	HOXB7	5.372405e-01
7215	HOXB8	6.200498e-01
7216	HOXB9	1
7217	HOXC10	3.744264e-01
7218	HOXC11	4.382746e-01
7219	HOXC12	6.472874e-02
7220	HOXC13	2.422578e-02
7221	HOXC4	1.031788e-01
7222	HOXC5	1.991468e-01
7223	HOXC6	3.401917e-01
7224	HOXC8	6.485714e-01
7225	HOXC9	3.695440e-01
7226	HOXD1	3.439852e-01
7227	HOXD10	7.424530e-01
7228	HOXD11	3.658899e-01
7229	HOXD12	6.648297e-01
7230	HOXD13	7.575219e-01
7231	HOXD3	1
7232	HOXD4	1
In gene HOXD8 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 630     n = 1	mu =   5.69e-07
7233	HOXD8	8.615056e-03
7234	HOXD9	7.002917e-01
7235	HP	8.797485e-01
7236	HP1BP3	4.083014e-01
7237	HPCA	1.504127e-01
7238	HPCAL1	6.316745e-01
Done

Running MutSig 2:
Scatter job 80: processing genes 7148 - 7238
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HOXB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
Cons ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
HOXB3   10000 perm   2 sec   (4794 perm/sec)   p_kst 2.490000e-01   p_cons 4.163000e-01   p_joint 4.525000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB3.11_1304_10000_0.249_0.4163_0.4525.png
                gene_name: HOXB3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 2 percent done.
HOXA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 2.672253e-02	ci left: 6.734756e-01	ci right 6.918179e-01	k: 6827	n:10000
HOXA5   10000 perm   2 sec   (5385 perm/sec)   p_kst 6.827000e-01   p_cons 3.680000e-01   p_joint 6.967000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA5.10_821_10000_0.6827_0.368_0.6967.png
                gene_name: HOXA5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 4 percent done.
HOXA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
Cons ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
KS ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
HOXA3   10000 perm   2 sec   (4976 perm/sec)   p_kst 4.739000e-01   p_cons 1.150000e-01   p_joint 2.789000e-01

Joint ci ratio: 5.378563e-02	ci left: 2.041746e-01	ci right 2.155099e-01	k: 4196	n:20000
Cons ci ratio: 7.677970e-02	ci left: 1.108556e-01	ci right 1.197565e-01	k: 2305	n:20000
KS ci ratio: 2.875873e-02	ci left: 4.746033e-01	ci right 4.885021e-01	k: 9631	n:20000
HOXA3   20000 perm   4 sec   (4539 perm/sec)   p_kst 4.815500e-01   p_cons 1.152500e-01   p_joint 2.098000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA3.9_1340_20000_0.48155_0.11525_0.2098.png
                gene_name: HOXA3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 6 percent done.
HOOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
HOOK1   10000 perm   2 sec   (5029 perm/sec)   p_kst 3.157000e-01   p_cons 2.988000e-01   p_joint 4.101000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK1.8_2275_10000_0.3157_0.2988_0.4101.png
                gene_name: HOOK1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 8 percent done.
HOXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
Cons ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
KS ci ratio: 6.739209e-02	ci left: 2.442058e-01	ci right 2.613385e-01	k: 2527	n:10000
HOXA2   10000 perm   2 sec   (6193 perm/sec)   p_kst 2.527000e-01   p_cons 8.235000e-01   p_joint 3.790000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA2.8_1139_10000_0.2527_0.8235_0.379.png
                gene_name: HOXA2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 10 percent done.
HOXB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
Cons ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
KS ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
HOXB1   10000 perm   2 sec   (5956 perm/sec)   p_kst 4.608000e-01   p_cons 4.361000e-01   p_joint 5.940000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB1.8_914_10000_0.4608_0.4361_0.594.png
                gene_name: HOXB1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 12 percent done.
HOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
HOXA1   10000 perm   2 sec   (5913 perm/sec)   p_kst 5.023000e-01   p_cons 9.400000e-03   p_joint 6.940000e-02

Joint ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 2.763902e-02	ci left: 4.944457e-01	ci right 5.083539e-01	k: 10028	n:20000
HOXA1   20000 perm   4 sec   (5278 perm/sec)   p_kst 5.014000e-01   p_cons 8.950000e-03   p_joint 3.770000e-02

Joint ci ratio: 9.228204e-02	ci left: 5.410936e-02	ci right 5.937689e-02	k: 1701	n:30000
Cons ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
KS ci ratio: 2.253615e-02	ci left: 4.964255e-01	ci right 5.077741e-01	k: 15063	n:30000
HOXA1   30000 perm   6 sec   (5015 perm/sec)   p_kst 5.021000e-01   p_cons 9.566667e-03   p_joint 5.670000e-02

Joint ci ratio: 1.023862e-01	ci left: 3.353725e-02	ci right 3.718061e-02	k: 1413	n:40000
Cons ci ratio: 1.998665e-01	ci left: 8.572620e-03	ci right 1.049959e-02	k: 380	n:40000
KS ci ratio: 1.952591e-02	ci left: 4.969626e-01	ci right 5.067871e-01	k: 20075	n:40000
HOXA1   40000 perm   8 sec   (4874 perm/sec)   p_kst 5.018750e-01   p_cons 9.500000e-03   p_joint 3.532500e-02

Joint ci ratio: 8.526230e-02	ci left: 3.882802e-02	ci right 4.230557e-02	k: 2027	n:50000
Cons ci ratio: 1.788139e-01	ci left: 8.668311e-03	ci right 1.038935e-02	k: 475	n:50000
KS ci ratio: 1.792956e-02	ci left: 4.843493e-01	ci right 4.931320e-01	k: 24437	n:50000
HOXA1   50000 perm   10 sec   (4766 perm/sec)   p_kst 4.887400e-01   p_cons 9.500000e-03   p_joint 4.054000e-02

Joint ci ratio: 8.606868e-02	ci left: 3.197657e-02	ci right 3.486879e-02	k: 2004	n:60000
Cons ci ratio: 1.641360e-01	ci left: 8.643348e-03	ci right 1.020466e-02	k: 564	n:60000
KS ci ratio: 1.632407e-02	ci left: 4.860589e-01	ci right 4.940754e-01	k: 29404	n:60000
HOXA1   60000 perm   13 sec   (4650 perm/sec)   p_kst 4.900667e-01   p_cons 9.400000e-03   p_joint 3.340000e-02

Joint ci ratio: 7.907709e-02	ci left: 3.257157e-02	ci right 3.526724e-02	k: 2373	n:70000
Cons ci ratio: 1.516319e-01	ci left: 8.739648e-03	ci right 1.018717e-02	k: 661	n:70000
KS ci ratio: 1.512516e-02	ci left: 4.859616e-01	ci right 4.933821e-01	k: 34277	n:70000
HOXA1   70000 perm   15 sec   (4554 perm/sec)   p_kst 4.896714e-01   p_cons 9.442857e-03   p_joint 3.390000e-02

Joint ci ratio: 7.542283e-02	ci left: 3.142922e-02	ci right 3.390483e-02	k: 2612	n:80000
Cons ci ratio: 1.416095e-01	ci left: 8.815272e-03	ci right 1.017066e-02	k: 758	n:80000
KS ci ratio: 1.411748e-02	ci left: 4.872925e-01	ci right 4.942332e-01	k: 39261	n:80000
HOXA1   80000 perm   18 sec   (4471 perm/sec)   p_kst 4.907625e-01   p_cons 9.475000e-03   p_joint 3.265000e-02

Joint ci ratio: 7.175056e-02	ci left: 3.094705e-02	ci right 3.326102e-02	k: 2888	n:90000
Cons ci ratio: 1.337383e-01	ci left: 8.822830e-03	ci right 1.009798e-02	k: 850	n:90000
KS ci ratio: 1.331918e-02	ci left: 4.871510e-01	ci right 4.936940e-01	k: 44138	n:90000
HOXA1   90000 perm   21 sec   (4384 perm/sec)   p_kst 4.904222e-01   p_cons 9.444444e-03   p_joint 3.208889e-02

Joint ci ratio: 6.296724e-02	ci left: 3.613395e-02	ci right 3.849298e-02	k: 3730	n:100000
Cons ci ratio: 1.265082e-01	ci left: 8.908035e-03	ci right 1.012067e-02	k: 950	n:100000
KS ci ratio: 1.263475e-02	ci left: 4.873569e-01	ci right 4.935637e-01	k: 49046	n:100000
HOXA1   100000 perm   23 sec   (4300 perm/sec)   p_kst 4.904600e-01   p_cons 9.500000e-03   p_joint 3.730000e-02

Joint ci ratio: 6.340424e-02	ci left: 3.251603e-02	ci right 3.465411e-02	k: 3693	n:110000
Cons ci ratio: 1.205686e-01	ci left: 8.943989e-03	ci right 1.010027e-02	k: 1046	n:110000
KS ci ratio: 1.205042e-02	ci left: 4.873506e-01	ci right 4.932681e-01	k: 53934	n:110000
HOXA1   110000 perm   26 sec   (4223 perm/sec)   p_kst 4.903091e-01   p_cons 9.509091e-03   p_joint 3.357273e-02

Joint ci ratio: 6.272919e-02	ci left: 3.052713e-02	ci right 3.251226e-02	k: 3781	n:120000
Cons ci ratio: 1.159069e-01	ci left: 8.894117e-03	ci right 9.996452e-03	k: 1132	n:120000
KS ci ratio: 1.152801e-02	ci left: 4.878843e-01	ci right 4.935495e-01	k: 58886	n:120000
HOXA1   120000 perm   29 sec   (4155 perm/sec)   p_kst 4.907167e-01   p_cons 9.433333e-03   p_joint 3.150833e-02

Joint ci ratio: 5.929038e-02	ci left: 3.156541e-02	ci right 3.350167e-02	k: 4228	n:130000
Cons ci ratio: 1.115626e-01	ci left: 8.882566e-03	ci right 9.939490e-03	k: 1222	n:130000
KS ci ratio: 1.104991e-02	ci left: 4.891634e-01	ci right 4.946062e-01	k: 63945	n:130000
HOXA1   130000 perm   32 sec   (4090 perm/sec)   p_kst 4.918846e-01   p_cons 9.400000e-03   p_joint 3.252308e-02

Joint ci ratio: 5.606296e-02	ci left: 3.279606e-02	ci right 3.469475e-02	k: 4723	n:140000
Cons ci ratio: 1.070572e-01	ci left: 8.977619e-03	ci right 9.999994e-03	k: 1327	n:140000
KS ci ratio: 1.065175e-02	ci left: 4.890850e-01	ci right 4.943296e-01	k: 68839	n:140000
HOXA1   140000 perm   35 sec   (4030 perm/sec)   p_kst 4.917071e-01   p_cons 9.478571e-03   p_joint 3.373571e-02

Joint ci ratio: 5.352730e-02	ci left: 3.359523e-02	ci right 3.544949e-02	k: 5177	n:150000
Cons ci ratio: 1.041260e-01	ci left: 8.872372e-03	ci right 9.853400e-03	k: 1403	n:150000
KS ci ratio: 1.028757e-02	ci left: 4.893202e-01	ci right 4.943868e-01	k: 73778	n:150000
HOXA1   150000 perm   38 sec   (3973 perm/sec)   p_kst 4.918533e-01   p_cons 9.353333e-03   p_joint 3.451333e-02

Joint ci ratio: 5.337440e-02	ci left: 3.174136e-02	ci right 3.348813e-02	k: 5217	n:160000
Cons ci ratio: 1.014229e-01	ci left: 8.780618e-03	ci right 9.724794e-03	k: 1479	n:160000
KS ci ratio: 9.954369e-03	ci left: 4.897286e-01	ci right 4.946342e-01	k: 78749	n:160000
HOXA1   160000 perm   41 sec   (3918 perm/sec)   p_kst 4.921813e-01   p_cons 9.243750e-03   p_joint 3.260625e-02

Joint ci ratio: 5.136622e-02	ci left: 3.227205e-02	ci right 3.397922e-02	k: 5630	n:170000
Cons ci ratio: 9.837887e-02	ci left: 8.797505e-03	ci right 9.713466e-03	k: 1572	n:170000
KS ci ratio: 9.663734e-03	ci left: 4.894619e-01	ci right 4.942207e-01	k: 83613	n:170000
HOXA1   170000 perm   44 sec   (3863 perm/sec)   p_kst 4.918412e-01   p_cons 9.247059e-03   p_joint 3.311765e-02

Outputting figure to mutsig2_images.part000000000080/HOXA1.7_1016_170000_0.49184_0.0092471_0.033118.png
                gene_name: HOXA1
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 13 percent done.
HOOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
Cons ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
HOOK3   10000 perm   2 sec   (5556 perm/sec)   p_kst 3.980000e-02   p_cons 6.536000e-01   p_joint 7.460000e-02

Joint ci ratio: 1.270996e-01	ci left: 4.250762e-02	ci right 4.832547e-02	k: 907	n:20000
Cons ci ratio: 2.094842e-02	ci left: 6.297391e-01	ci right 6.431213e-01	k: 12729	n:20000
KS ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
HOOK3   20000 perm   4 sec   (5025 perm/sec)   p_kst 3.675000e-02   p_cons 6.364500e-01   p_joint 4.535000e-02

Joint ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
Cons ci ratio: 1.701413e-02	ci left: 6.334349e-01	ci right 6.443382e-01	k: 19167	n:30000
KS ci ratio: 1.174521e-01	ci left: 3.369361e-02	ci right 3.793023e-02	k: 1073	n:30000
HOOK3   30000 perm   6 sec   (4809 perm/sec)   p_kst 3.576667e-02   p_cons 6.389000e-01   p_joint 6.510000e-02

Joint ci ratio: 7.246129e-02	ci left: 6.569933e-02	ci right 7.066358e-02	k: 2726	n:40000
Cons ci ratio: 1.505246e-02	ci left: 6.242442e-01	ci right 6.337370e-01	k: 25160	n:40000
KS ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
HOOK3   40000 perm   9 sec   (4666 perm/sec)   p_kst 3.565000e-02   p_cons 6.290000e-01   p_joint 6.815000e-02

Joint ci ratio: 7.209908e-02	ci left: 5.380391e-02	ci right 5.784786e-02	k: 2790	n:50000
Cons ci ratio: 1.352230e-02	ci left: 6.227038e-01	ci right 6.312015e-01	k: 31348	n:50000
KS ci ratio: 9.151010e-02	ci left: 3.377775e-02	ci right 3.703648e-02	k: 1769	n:50000
HOOK3   50000 perm   11 sec   (4550 perm/sec)   p_kst 3.538000e-02   p_cons 6.269600e-01   p_joint 5.580000e-02

Outputting figure to mutsig2_images.part000000000080/HOOK3.6_2245_50000_0.03538_0.62696_0.0558.png
                gene_name: HOOK3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 15 percent done.
HNF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
Cons ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
KS ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
HNF4A   10000 perm   2 sec   (5489 perm/sec)   p_kst 6.208000e-01   p_cons 2.445000e-01   p_joint 5.612000e-01

Outputting figure to mutsig2_images.part000000000080/HNF4A.5_1643_10000_0.6208_0.2445_0.5612.png
                gene_name: HNF4A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 17 percent done.
HNRNPA2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
Cons ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
KS ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
HNRNPA2B1   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.564000e-01   p_cons 5.546000e-01   p_joint 2.285000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA2B1.5_1106_10000_0.1564_0.5546_0.2285.png
                gene_name: HNRNPA2B1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 19 percent done.
HOXA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.026797e-01	ci left: 1.206309e-01	ci right 1.337871e-01	k: 1271	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
HOXA9   10000 perm   2 sec   (5924 perm/sec)   p_kst 2.815000e-01   p_cons 1.140000e-01   p_joint 1.271000e-01

Joint ci ratio: 6.038161e-02	ci left: 1.687686e-01	ci right 1.793264e-01	k: 3480	n:20000
Cons ci ratio: 7.631289e-02	ci left: 1.120847e-01	ci right 1.210271e-01	k: 2330	n:20000
KS ci ratio: 4.477024e-02	ci left: 2.708553e-01	ci right 2.833096e-01	k: 5541	n:20000
HOXA9   20000 perm   4 sec   (5239 perm/sec)   p_kst 2.770500e-01   p_cons 1.165000e-01   p_joint 1.740000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA9.5_827_20000_0.27705_0.1165_0.174.png
                gene_name: HOXA9
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 21 percent done.
HOXC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
Cons ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
KS ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
HOXC13   10000 perm   2 sec   (6125 perm/sec)   p_kst 1.353000e-01   p_cons 3.032000e-01   p_joint 2.009000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC13.5_1001_10000_0.1353_0.3032_0.2009.png
                gene_name: HOXC13
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
HOXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
Cons ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
KS ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
HOXD3   10000 perm   2 sec   (6051 perm/sec)   p_kst 6.098000e-01   p_cons 7.142000e-01   p_joint 7.752000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD3.5_1307_10000_0.6098_0.7142_0.7752.png
                gene_name: HOXD3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 25 percent done.
HOXD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
HOXD8   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.700000e-02   p_cons 1.380000e-01   p_joint 1.520000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 6.928976e-02	ci left: 1.331494e-01	ci right 1.427562e-01	k: 2758	n:20000
KS ci ratio: 1.491115e-01	ci left: 3.090466e-02	ci right 3.593219e-02	k: 667	n:20000
HOXD8   20000 perm   4 sec   (5500 perm/sec)   p_kst 3.335000e-02   p_cons 1.379000e-01   p_joint 5.350000e-03

Joint ci ratio: 1.971993e-01	ci left: 1.171716e-02	ci right 1.431175e-02	k: 389	n:30000
Cons ci ratio: 5.675427e-02	ci left: 1.332923e-01	ci right 1.411114e-01	k: 4115	n:30000
KS ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
HOXD8   30000 perm   6 sec   (5224 perm/sec)   p_kst 3.453333e-02   p_cons 1.371667e-01   p_joint 1.296667e-02

Joint ci ratio: 1.916555e-01	ci left: 9.357548e-03	ci right 1.136449e-02	k: 413	n:40000
Cons ci ratio: 4.878563e-02	ci left: 1.355741e-01	ci right 1.423784e-01	k: 5558	n:40000
KS ci ratio: 1.044323e-01	ci left: 3.224538e-02	ci right 3.582268e-02	k: 1360	n:40000
HOXD8   40000 perm   8 sec   (5026 perm/sec)   p_kst 3.400000e-02   p_cons 1.389500e-01   p_joint 1.032500e-02

Joint ci ratio: 2.044299e-01	ci left: 6.553571e-03	ci right 8.064478e-03	k: 364	n:50000
Cons ci ratio: 4.360157e-02	ci left: 1.361174e-01	ci right 1.422045e-01	k: 6957	n:50000
KS ci ratio: 9.341442e-02	ci left: 3.242859e-02	ci right 3.562581e-02	k: 1700	n:50000
HOXD8   50000 perm   10 sec   (4882 perm/sec)   p_kst 3.400000e-02   p_cons 1.391400e-01   p_joint 7.280000e-03

Joint ci ratio: 1.890243e-01	ci left: 6.443773e-03	ci right 7.804557e-03	k: 426	n:60000
Cons ci ratio: 3.987369e-02	ci left: 1.359601e-01	ci right 1.415082e-01	k: 8323	n:60000
KS ci ratio: 8.573744e-02	ci left: 3.222137e-02	ci right 3.512396e-02	k: 2019	n:60000
HOXD8   60000 perm   13 sec   (4768 perm/sec)   p_kst 3.365000e-02   p_cons 1.387167e-01   p_joint 7.100000e-03

Joint ci ratio: 2.024270e-01	ci left: 4.789134e-03	ci right 5.881058e-03	k: 372	n:70000
Cons ci ratio: 3.678260e-02	ci left: 1.370263e-01	ci right 1.421751e-01	k: 9771	n:70000
KS ci ratio: 7.937172e-02	ci left: 3.233337e-02	ci right 3.501975e-02	k: 2356	n:70000
HOXD8   70000 perm   15 sec   (4676 perm/sec)   p_kst 3.365714e-02   p_cons 1.395857e-01   p_joint 5.314286e-03

Joint ci ratio: 1.810597e-01	ci left: 5.297469e-03	ci right 6.363848e-03	k: 465	n:80000
Cons ci ratio: 3.332717e-02	ci left: 1.449749e-01	ci right 1.499007e-01	k: 11794	n:80000
KS ci ratio: 7.451378e-02	ci left: 3.219016e-02	ci right 3.469383e-02	k: 2674	n:80000
HOXD8   80000 perm   17 sec   (4592 perm/sec)   p_kst 3.342500e-02   p_cons 1.474250e-01   p_joint 5.812500e-03

Joint ci ratio: 8.962891e-02	ci left: 1.987753e-02	ci right 2.175353e-02	k: 1872	n:90000
Cons ci ratio: 3.137871e-02	ci left: 1.454541e-01	ci right 1.501020e-01	k: 13299	n:90000
KS ci ratio: 6.856566e-02	ci left: 3.384156e-02	ci right 3.625520e-02	k: 3153	n:90000
HOXD8   90000 perm   20 sec   (4511 perm/sec)   p_kst 3.503333e-02   p_cons 1.477667e-01   p_joint 2.080000e-02

Outputting figure to mutsig2_images.part000000000080/HOXD8.5_881_90000_0.035033_0.14777_0.0208.png
                gene_name: HOXD8
               theta_stop: 0.090 
                    nperm: 90000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 27 percent done.
HMMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
KS ci ratio: 1.390393e-02	ci left: 8.819628e-01	ci right 8.944101e-01	k: 8883	n:10000
HMMR   10000 perm   2 sec   (5884 perm/sec)   p_kst 8.883000e-01   p_cons 4.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HMMR.4_2250_10000_0.8883_0.4786_1.png
                gene_name: HMMR
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
HMP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
Cons ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
KS ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
HMP19   10000 perm   2 sec   (6271 perm/sec)   p_kst 4.882000e-01   p_cons 9.010000e-02   p_joint 4.331000e-01

Joint ci ratio: 4.532422e-02	ci left: 2.659903e-01	ci right 2.783760e-01	k: 5443	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 2.838129e-02	ci left: 4.811996e-01	ci right 4.951039e-01	k: 9763	n:20000
HMP19   20000 perm   4 sec   (5600 perm/sec)   p_kst 4.881500e-01   p_cons 9.370000e-02   p_joint 2.721500e-01

Outputting figure to mutsig2_images.part000000000080/HMP19.4_532_20000_0.48815_0.0937_0.27215.png
                gene_name: HMP19
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
HNRNPM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
Cons ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
KS ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
HNRNPM   10000 perm   2 sec   (5591 perm/sec)   p_kst 7.058000e-01   p_cons 2.178000e-01   p_joint 5.922000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPM.4_2257_10000_0.7058_0.2178_0.5922.png
                gene_name: HNRNPM
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 33 percent done.
HOXC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
Cons ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
KS ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
HOXC12   10000 perm   2 sec   (6536 perm/sec)   p_kst 1.563000e-01   p_cons 7.210000e-02   p_joint 5.620000e-02

Joint ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
Cons ci ratio: 1.033518e-01	ci left: 6.362186e-02	ci right 7.060464e-02	k: 1341	n:20000
KS ci ratio: 6.427714e-02	ci left: 1.517365e-01	ci right 1.618635e-01	k: 3135	n:20000
HOXC12   20000 perm   3 sec   (5795 perm/sec)   p_kst 1.567500e-01   p_cons 6.705000e-02   p_joint 4.615000e-02

Joint ci ratio: 9.303778e-02	ci left: 5.326166e-02	ci right 5.849143e-02	k: 1675	n:30000
Cons ci ratio: 8.376422e-02	ci left: 6.517655e-02	ci right 7.090745e-02	k: 2040	n:30000
KS ci ratio: 5.256187e-02	ci left: 1.522735e-01	ci right 1.605265e-01	k: 4691	n:30000
HOXC12   30000 perm   5 sec   (5503 perm/sec)   p_kst 1.563667e-01   p_cons 6.800000e-02   p_joint 5.583333e-02

Outputting figure to mutsig2_images.part000000000080/HOXC12.4_855_30000_0.15637_0.068_0.055833.png
                gene_name: HOXC12
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 35 percent done.
HOXC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
Cons ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
KS ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
HOXC4   10000 perm   1 sec   (6701 perm/sec)   p_kst 3.798000e-01   p_cons 1.091000e-01   p_joint 1.953000e-01

Joint ci ratio: 6.176121e-02	ci left: 1.624471e-01	ci right 1.728497e-01	k: 3352	n:20000
Cons ci ratio: 8.157699e-02	ci left: 9.926215e-02	ci right 1.077535e-01	k: 2069	n:20000
KS ci ratio: 3.480140e-02	ci left: 3.813379e-01	ci right 3.948946e-01	k: 7762	n:20000
HOXC4   20000 perm   3 sec   (5898 perm/sec)   p_kst 3.881000e-01   p_cons 1.034500e-01   p_joint 1.676000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC4.4_803_20000_0.3881_0.10345_0.1676.png
                gene_name: HOXC4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 37 percent done.
HOXD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KS ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
HOXD10   10000 perm   2 sec   (6203 perm/sec)   p_kst 2.552000e-01   p_cons 2.138000e-01   p_joint 3.460000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD10.4_1031_10000_0.2552_0.2138_0.346.png
                gene_name: HOXD10
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 38 percent done.
HP1BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
Cons ci ratio: 2.541083e-02	ci left: 6.950453e-01	ci right 7.130357e-01	k: 7041	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
HP1BP3   10000 perm   2 sec   (5813 perm/sec)   p_kst 2.260000e-02   p_cons 7.041000e-01   p_joint 3.100000e-02

Joint ci ratio: 1.338834e-01	ci left: 3.834219e-02	ci right 4.389223e-02	k: 821	n:20000
Cons ci ratio: 1.743533e-02	ci left: 7.101976e-01	ci right 7.227394e-01	k: 14330	n:20000
KS ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
HP1BP3   20000 perm   4 sec   (5182 perm/sec)   p_kst 2.200000e-02   p_cons 7.165000e-01   p_joint 4.105000e-02

Joint ci ratio: 1.232858e-01	ci left: 3.058681e-02	ci right 3.463770e-02	k: 977	n:30000
Cons ci ratio: 1.475482e-02	ci left: 6.965203e-01	ci right 7.069072e-01	k: 21052	n:30000
KS ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
HP1BP3   30000 perm   6 sec   (4944 perm/sec)   p_kst 2.306667e-02   p_cons 7.017333e-01   p_joint 3.256667e-02

Joint ci ratio: 1.060150e-01	ci left: 3.129522e-02	ci right 3.482299e-02	k: 1321	n:40000
Cons ci ratio: 1.281729e-02	ci left: 6.959342e-01	ci right 7.049367e-01	k: 28018	n:40000
KS ci ratio: 1.288212e-01	ci left: 2.116574e-02	ci right 2.410413e-02	k: 904	n:40000
HP1BP3   40000 perm   8 sec   (4788 perm/sec)   p_kst 2.260000e-02   p_cons 7.004500e-01   p_joint 3.302500e-02

Joint ci ratio: 8.891266e-02	ci left: 3.575379e-02	ci right 3.910019e-02	k: 1870	n:50000
Cons ci ratio: 1.147209e-02	ci left: 6.961223e-01	ci right 7.041744e-01	k: 35008	n:50000
KS ci ratio: 1.140029e-01	ci left: 2.178158e-02	ci right 2.443419e-02	k: 1154	n:50000
HP1BP3   50000 perm   11 sec   (4672 perm/sec)   p_kst 2.308000e-02   p_cons 7.001600e-01   p_joint 3.740000e-02

Joint ci ratio: 8.417595e-02	ci left: 3.341305e-02	ci right 3.636549e-02	k: 2092	n:60000
Cons ci ratio: 1.045909e-02	ci left: 6.970177e-01	ci right 7.043629e-01	k: 42042	n:60000
KS ci ratio: 1.041471e-01	ci left: 2.186405e-02	ci right 2.428238e-02	k: 1383	n:60000
HP1BP3   60000 perm   13 sec   (4577 perm/sec)   p_kst 2.305000e-02   p_cons 7.007000e-01   p_joint 3.486667e-02

Joint ci ratio: 8.022092e-02	ci left: 3.166089e-02	ci right 3.432086e-02	k: 2308	n:70000
Cons ci ratio: 9.687864e-03	ci left: 6.970915e-01	ci right 7.038919e-01	k: 49035	n:70000
KS ci ratio: 9.462731e-02	ci left: 2.279510e-02	ci right 2.507316e-02	k: 1674	n:70000
HP1BP3   70000 perm   16 sec   (4482 perm/sec)   p_kst 2.391429e-02   p_cons 7.005000e-01   p_joint 3.297143e-02

Outputting figure to mutsig2_images.part000000000080/HP1BP3.4_1710_70000_0.023914_0.7005_0.032971.png
                gene_name: HP1BP3
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 40 percent done.
HMOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
Cons ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
HMOX1   10000 perm   2 sec   (6446 perm/sec)   p_kst 9.660000e-01   p_cons 2.492000e-01   p_joint 5.362000e-01

Outputting figure to mutsig2_images.part000000000080/HMOX1.3_887_10000_0.966_0.2492_0.5362.png
                gene_name: HMOX1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 42 percent done.
HNF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
HNF1A   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.522000e-01   p_cons 4.850000e-01   p_joint 3.946000e-01

Outputting figure to mutsig2_images.part000000000080/HNF1A.3_1936_10000_0.3522_0.485_0.3946.png
                gene_name: HNF1A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 44 percent done.
HNF4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
Cons ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
KS ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
HNF4G   10000 perm   2 sec   (6132 perm/sec)   p_kst 2.543000e-01   p_cons 1.447000e-01   p_joint 3.036000e-01

Outputting figure to mutsig2_images.part000000000080/HNF4G.3_1378_10000_0.2543_0.1447_0.3036.png
                gene_name: HNF4G
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 46 percent done.
HNRNPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
Cons ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
KS ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
HNRNPC   10000 perm   2 sec   (6293 perm/sec)   p_kst 6.178000e-01   p_cons 6.908000e-01   p_joint 9.764000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPC.3_949_10000_0.6178_0.6908_0.9764.png
                gene_name: HNRNPC
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 48 percent done.
HNRNPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
KS ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
HNRNPH1   10000 perm   2 sec   (6242 perm/sec)   p_kst 5.108000e-01   p_cons 8.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPH1.3_1398_10000_0.5108_0.8716_1.png
                gene_name: HNRNPH1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
HNRNPK
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
KS ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
HNRNPK   10000 perm   2 sec   (6488 perm/sec)   p_kst 1.367000e-01   p_cons 4.478000e-01   p_joint 2.794000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPK.2_1490_10000_0.1367_0.4478_0.2794.png
                gene_name: HNRNPK
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 52 percent done.
HNRNPU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
Cons ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
KS ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
HNRNPU   10000 perm   2 sec   (5773 perm/sec)   p_kst 1.729000e-01   p_cons 4.780000e-02   p_joint 1.775000e-01

Joint ci ratio: 6.463191e-02	ci left: 1.503058e-01	ci right 1.603947e-01	k: 3106	n:20000
Cons ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
KS ci ratio: 6.123536e-02	ci left: 1.648173e-01	ci right 1.752788e-01	k: 3400	n:20000
HNRNPU   20000 perm   4 sec   (5166 perm/sec)   p_kst 1.700000e-01   p_cons 5.680000e-02   p_joint 1.553000e-01

Joint ci ratio: 5.116624e-02	ci left: 1.594302e-01	ci right 1.678351e-01	k: 4908	n:30000
Cons ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
KS ci ratio: 5.000166e-02	ci left: 1.657648e-01	ci right 1.742992e-01	k: 5100	n:30000
HNRNPU   30000 perm   6 sec   (4915 perm/sec)   p_kst 1.700000e-01   p_cons 5.536667e-02   p_joint 1.636000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPU.3_2534_30000_0.17_0.055367_0.1636.png
                gene_name: HNRNPU
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 54 percent done.
HNRNPUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
Cons ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
KS ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
HNRNPUL1   10000 perm   2 sec   (5723 perm/sec)   p_kst 2.407000e-01   p_cons 2.132000e-01   p_joint 3.000000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPUL1.3_2631_10000_0.2407_0.2132_0.3.png
                gene_name: HNRNPUL1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 56 percent done.
HNRNPUL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
HNRNPUL2   10000 perm   2 sec   (5771 perm/sec)   p_kst 5.379000e-01   p_cons 1.001000e-01   p_joint 3.332000e-01

Joint ci ratio: 3.900531e-02	ci left: 3.289555e-01	ci right 3.420923e-01	k: 6710	n:20000
Cons ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
KS ci ratio: 2.577767e-02	ci left: 5.292588e-01	ci right 5.431306e-01	k: 10724	n:20000
HNRNPUL2   20000 perm   4 sec   (5107 perm/sec)   p_kst 5.362000e-01   p_cons 9.860000e-02   p_joint 3.355000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPUL2.3_2300_20000_0.5362_0.0986_0.3355.png
                gene_name: HNRNPUL2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
HOXA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
Cons ci ratio: 3.001256e-02	ci left: 6.208524e-01	ci right 6.398716e-01	k: 6304	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
HOXA7   10000 perm   2 sec   (6502 perm/sec)   p_kst 5.469000e-01   p_cons 6.304000e-01   p_joint 8.589000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA7.3_701_10000_0.5469_0.6304_0.8589.png
                gene_name: HOXA7
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 60 percent done.
HOXB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
Cons ci ratio: 5.263190e-02	ci left: 3.473041e-01	ci right 3.661794e-01	k: 3567	n:10000
KS ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
HOXB4   10000 perm   2 sec   (6494 perm/sec)   p_kst 5.628000e-01   p_cons 3.567000e-01   p_joint 8.422000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB4.3_764_10000_0.5628_0.3567_0.8422.png
                gene_name: HOXB4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 62 percent done.
HOXC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
KS ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
HOXC10   10000 perm   2 sec   (6570 perm/sec)   p_kst 5.990000e-01   p_cons 7.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC10.3_1037_10000_0.599_0.7574_1.png
                gene_name: HOXC10
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
HOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
Cons ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
HOXD1   10000 perm   2 sec   (6563 perm/sec)   p_kst 1.275000e-01   p_cons 3.449000e-01   p_joint 1.504000e-01

Joint ci ratio: 6.971536e-02	ci left: 1.317208e-01	ci right 1.412852e-01	k: 2729	n:20000
Cons ci ratio: 3.822250e-02	ci left: 3.380116e-01	ci right 3.512336e-01	k: 6892	n:20000
KS ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
HOXD1   20000 perm   3 sec   (5801 perm/sec)   p_kst 1.288000e-01   p_cons 3.446000e-01   p_joint 1.364500e-01

Outputting figure to mutsig2_images.part000000000080/HOXD1.3_995_20000_0.1288_0.3446_0.13645.png
                gene_name: HOXD1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 65 percent done.
HNF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
Cons ci ratio: 1.965582e-02	ci left: 7.911103e-01	ci right 8.069151e-01	k: 7991	n:10000
KS ci ratio: 3.052336e-02	ci left: 6.129143e-01	ci right 6.320143e-01	k: 6225	n:10000
HNF1B   10000 perm   2 sec   (6419 perm/sec)   p_kst 6.225000e-01   p_cons 7.991000e-01   p_joint 6.533000e-01

Outputting figure to mutsig2_images.part000000000080/HNF1B.2_1710_10000_0.6225_0.7991_0.6533.png
                gene_name: HNF1B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 67 percent done.
HNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
Cons ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
KS ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
HNMT   10000 perm   2 sec   (6589 perm/sec)   p_kst 7.963000e-01   p_cons 3.518000e-01   p_joint 6.851000e-01

Outputting figure to mutsig2_images.part000000000080/HNMT.2_1121_10000_0.7963_0.3518_0.6851.png
                gene_name: HNMT
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 69 percent done.
HNRNPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
Cons ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
KS ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
HNRNPA1   10000 perm   1 sec   (6675 perm/sec)   p_kst 6.796000e-01   p_cons 2.014000e-01   p_joint 9.021000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA1.2_1159_10000_0.6796_0.2014_0.9021.png
                gene_name: HNRNPA1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 71 percent done.
HNRNPA1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
Cons ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
KS ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
HNRNPA1L2   10000 perm   1 sec   (6888 perm/sec)   p_kst 9.160000e-02   p_cons 6.365000e-01   p_joint 1.203000e-01

Joint ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
Cons ci ratio: 2.105037e-02	ci left: 6.274806e-01	ci right 6.408804e-01	k: 12684	n:20000
KS ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
HNRNPA1L2   20000 perm   3 sec   (6007 perm/sec)   p_kst 9.105000e-02   p_cons 6.342000e-01   p_joint 1.212500e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA1L2.2_967_20000_0.09105_0.6342_0.12125.png
                gene_name: HNRNPA1L2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 73 percent done.
HNRNPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
HNRNPF   10000 perm   1 sec   (6844 perm/sec)   p_kst 1.787000e-01   p_cons 8.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPF.2_1252_10000_0.1787_0.8408_1.png
                gene_name: HNRNPF
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
HNRNPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
Cons ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
KS ci ratio: 6.111290e-02	ci left: 2.825056e-01	ci right 3.004161e-01	k: 2914	n:10000
HNRNPH2   10000 perm   1 sec   (6942 perm/sec)   p_kst 2.914000e-01   p_cons 5.364000e-01   p_joint 8.052000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPH2.2_1354_10000_0.2914_0.5364_0.8052.png
                gene_name: HNRNPH2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 77 percent done.
HOMER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
HOMER1   10000 perm   1 sec   (6808 perm/sec)   p_kst 5.272000e-01   p_cons 1.465000e-01   p_joint 9.701000e-01

Outputting figure to mutsig2_images.part000000000080/HOMER1.2_1101_10000_0.5272_0.1465_0.9701.png
                gene_name: HOMER1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 79 percent done.
HOMEZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
Cons ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
KS ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
HOMEZ   10000 perm   2 sec   (6400 perm/sec)   p_kst 9.520000e-02   p_cons 1.008000e-01   p_joint 5.750000e-02

Joint ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
Cons ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
HOMEZ   20000 perm   4 sec   (5682 perm/sec)   p_kst 9.130000e-02   p_cons 1.018000e-01   p_joint 9.525000e-02

Outputting figure to mutsig2_images.part000000000080/HOMEZ.2_1661_20000_0.0913_0.1018_0.09525.png
                gene_name: HOMEZ
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 81 percent done.
HOXA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
Cons ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
KS ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
HOXA11   10000 perm   1 sec   (6882 perm/sec)   p_kst 1.407000e-01   p_cons 9.640000e-02   p_joint 9.076000e-01

Joint ci ratio: 7.005184e-03	ci left: 9.366192e-01	ci right 9.432522e-01	k: 18800	n:20000
Cons ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
KS ci ratio: 6.952379e-02	ci left: 1.323611e-01	ci right 1.419446e-01	k: 2742	n:20000
HOXA11   20000 perm   3 sec   (6029 perm/sec)   p_kst 1.371000e-01   p_cons 9.685000e-02   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA11.2_950_20000_0.1371_0.09685_0.94.png
                gene_name: HOXA11
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 83 percent done.
HOXB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KS ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
HOXB8   10000 perm   1 sec   (7010 perm/sec)   p_kst 9.442000e-01   p_cons 3.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXB8.2_740_10000_0.9442_0.3146_1.png
                gene_name: HOXB8
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
HOXB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
Cons ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
KS ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
HOXB9   10000 perm   1 sec   (6988 perm/sec)   p_kst 7.899000e-01   p_cons 1.203000e-01   p_joint 8.857000e-01

Joint ci ratio: 1.366224e-02	ci left: 7.989851e-01	ci right 8.100262e-01	k: 16091	n:20000
Cons ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
KS ci ratio: 1.440107e-02	ci left: 7.817135e-01	ci right 7.931028e-01	k: 15749	n:20000
HOXB9   20000 perm   3 sec   (6176 perm/sec)   p_kst 7.874500e-01   p_cons 1.191000e-01   p_joint 8.045500e-01

Outputting figure to mutsig2_images.part000000000080/HOXB9.2_761_20000_0.78745_0.1191_0.80455.png
                gene_name: HOXB9
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 87 percent done.
HOXC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
Cons ci ratio: 2.171434e-02	ci left: 7.567657e-01	ci right 7.734796e-01	k: 7652	n:10000
KS ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
HOXC11   10000 perm   1 sec   (7073 perm/sec)   p_kst 6.779000e-01   p_cons 7.652000e-01   p_joint 9.514000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC11.2_923_10000_0.6779_0.7652_0.9514.png
                gene_name: HOXC11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 88 percent done.
HOXC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
KS ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
HOXC5   10000 perm   1 sec   (6955 perm/sec)   p_kst 2.860000e-02   p_cons 6.960000e-01   p_joint 3.700000e-02

Joint ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
Cons ci ratio: 1.839215e-02	ci left: 6.878622e-01	ci right 7.006813e-01	k: 13886	n:20000
KS ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
HOXC5   20000 perm   3 sec   (6099 perm/sec)   p_kst 2.905000e-02   p_cons 6.943000e-01   p_joint 3.720000e-02

Joint ci ratio: 1.123436e-01	ci left: 3.680495e-02	ci right 4.121823e-02	k: 1169	n:30000
Cons ci ratio: 1.496895e-02	ci left: 6.904245e-01	ci right 7.008709e-01	k: 20870	n:30000
KS ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
HOXC5   30000 perm   5 sec   (5795 perm/sec)   p_kst 3.050000e-02   p_cons 6.956667e-01   p_joint 3.896667e-02

Joint ci ratio: 9.633291e-02	ci left: 3.783195e-02	ci right 4.168523e-02	k: 1589	n:40000
Cons ci ratio: 1.304448e-02	ci left: 6.884785e-01	ci right 6.975434e-01	k: 27721	n:40000
KS ci ratio: 1.094891e-01	ci left: 2.934747e-02	ci right 3.277106e-02	k: 1241	n:40000
HOXC5   40000 perm   7 sec   (5597 perm/sec)   p_kst 3.102500e-02   p_cons 6.930250e-01   p_joint 3.972500e-02

Joint ci ratio: 8.676714e-02	ci left: 3.751573e-02	ci right 4.093804e-02	k: 1960	n:50000
Cons ci ratio: 1.245307e-02	ci left: 6.604623e-01	ci right 6.687586e-01	k: 33231	n:50000
KS ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
HOXC5   50000 perm   9 sec   (5450 perm/sec)   p_kst 3.052000e-02   p_cons 6.646200e-01   p_joint 3.920000e-02

Outputting figure to mutsig2_images.part000000000080/HOXC5.2_677_50000_0.03052_0.66462_0.0392.png
                gene_name: HOXC5
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 90 percent done.
HOXC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
KS ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
HOXC6   10000 perm   1 sec   (6883 perm/sec)   p_kst 8.945000e-01   p_cons 8.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC6.2_716_10000_0.8945_0.8964_1.png
                gene_name: HOXC6
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
HOXC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
KS ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
HOXC9   10000 perm   1 sec   (7238 perm/sec)   p_kst 8.454000e-01   p_cons 4.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC9.2_791_10000_0.8454_0.4132_1.png
                gene_name: HOXC9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
HOXD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
HOXD11   10000 perm   1 sec   (6806 perm/sec)   p_kst 1.618000e-01   p_cons 1.830000e-02   p_joint 2.021000e-01

Joint ci ratio: 5.597930e-02	ci left: 1.913588e-01	ci right 2.024295e-01	k: 3937	n:20000
Cons ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
KS ci ratio: 6.327504e-02	ci left: 1.558816e-01	ci right 1.661172e-01	k: 3219	n:20000
HOXD11   20000 perm   3 sec   (6009 perm/sec)   p_kst 1.609500e-01   p_cons 1.790000e-02   p_joint 1.968500e-01

Joint ci ratio: 8.740425e-02	ci left: 6.008051e-02	ci right 6.560452e-02	k: 1884	n:30000
Cons ci ratio: 1.722679e-01	ci left: 1.550360e-02	ci right 1.845768e-02	k: 508	n:30000
KS ci ratio: 5.151166e-02	ci left: 1.576160e-01	ci right 1.659830e-01	k: 4853	n:30000
HOXD11   30000 perm   5 sec   (5651 perm/sec)   p_kst 1.617667e-01   p_cons 1.693333e-02   p_joint 6.280000e-02

Joint ci ratio: 7.762982e-02	ci left: 5.759400e-02	ci right 6.227014e-02	k: 2396	n:40000
Cons ci ratio: 1.512035e-01	ci left: 1.527431e-02	ci right 1.779658e-02	k: 660	n:40000
KS ci ratio: 4.465993e-02	ci left: 1.578811e-01	ci right 1.651181e-01	k: 6459	n:40000
HOXD11   40000 perm   7 sec   (5430 perm/sec)   p_kst 1.614750e-01   p_cons 1.650000e-02   p_joint 5.990000e-02

Joint ci ratio: 6.876847e-02	ci left: 5.891775e-02	ci right 6.313340e-02	k: 3050	n:50000
Cons ci ratio: 1.355121e-01	ci left: 1.534355e-02	ci right 1.759309e-02	k: 822	n:50000
KS ci ratio: 3.992742e-02	ci left: 1.583834e-01	ci right 1.648560e-01	k: 8080	n:50000
HOXD11   50000 perm   9 sec   (5276 perm/sec)   p_kst 1.616000e-01   p_cons 1.644000e-02   p_joint 6.100000e-02

Joint ci ratio: 6.010426e-02	ci left: 6.420682e-02	ci right 6.820193e-02	k: 3971	n:60000
Cons ci ratio: 1.224877e-01	ci left: 1.575439e-02	ci right 1.782606e-02	k: 1006	n:60000
KS ci ratio: 3.664079e-02	ci left: 1.572567e-01	ci right 1.631429e-01	k: 9611	n:60000
HOXD11   60000 perm   12 sec   (5062 perm/sec)   p_kst 1.601833e-01   p_cons 1.676667e-02   p_joint 6.618333e-02

Joint ci ratio: 5.569729e-02	ci left: 6.424211e-02	ci right 6.793682e-02	k: 4625	n:70000
Cons ci ratio: 1.143374e-01	ci left: 1.556925e-02	ci right 1.747113e-02	k: 1155	n:70000
KS ci ratio: 3.398779e-02	ci left: 1.569649e-01	ci right 1.624062e-01	k: 11177	n:70000
HOXD11   70000 perm   15 sec   (4756 perm/sec)   p_kst 1.596714e-01   p_cons 1.650000e-02   p_joint 6.607143e-02

Joint ci ratio: 5.224763e-02	ci left: 6.401738e-02	ci right 6.746419e-02	k: 5258	n:80000
Cons ci ratio: 1.072066e-01	ci left: 1.555556e-02	ci right 1.732976e-02	k: 1314	n:80000
KS ci ratio: 3.184292e-02	ci left: 1.567206e-01	ci right 1.618042e-01	k: 12740	n:80000
HOXD11   80000 perm   17 sec   (4583 perm/sec)   p_kst 1.592500e-01   p_cons 1.642500e-02   p_joint 6.572500e-02

Joint ci ratio: 4.935507e-02	ci left: 6.388113e-02	ci right 6.712472e-02	k: 5894	n:90000
Cons ci ratio: 1.015079e-01	ci left: 1.547195e-02	ci right 1.713722e-02	k: 1466	n:90000
KS ci ratio: 3.008878e-02	ci left: 1.562741e-01	ci right 1.610590e-01	k: 14279	n:90000
HOXD11   90000 perm   20 sec   (4508 perm/sec)   p_kst 1.586556e-01   p_cons 1.628889e-02   p_joint 6.548889e-02

Joint ci ratio: 7.006678e-02	ci left: 2.928556e-02	ci right 3.142180e-02	k: 3034	n:100000
Cons ci ratio: 9.675249e-02	ci left: 1.536803e-02	ci right 1.694022e-02	k: 1614	n:100000
KS ci ratio: 2.859258e-02	ci left: 1.559531e-01	ci right 1.604868e-01	k: 15821	n:100000
HOXD11   100000 perm   22 sec   (4465 perm/sec)   p_kst 1.582100e-01   p_cons 1.614000e-02   p_joint 3.034000e-02

Outputting figure to mutsig2_images.part000000000080/HOXD11.2_1025_100000_0.15821_0.01614_0.03034.png
                gene_name: HOXD11
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 96 percent done.
HOXD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
Cons ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
KS ci ratio: 1.569355e-02	ci left: 8.549826e-01	ci right 8.686059e-01	k: 8619	n:10000
HOXD12   10000 perm   1 sec   (6947 perm/sec)   p_kst 8.619000e-01   p_cons 5.096000e-01   p_joint 9.300000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD12.2_821_10000_0.8619_0.5096_0.93.png
                gene_name: HOXD12
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 98 percent done.
HPCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
Cons ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
KS ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
HPCA   10000 perm   1 sec   (6970 perm/sec)   p_kst 4.955000e-01   p_cons 8.180000e-02   p_joint 9.130000e-02

Joint ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
Cons ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
KS ci ratio: 2.830474e-02	ci left: 4.825490e-01	ci right 4.964541e-01	k: 9790	n:20000
HPCA   20000 perm   3 sec   (5954 perm/sec)   p_kst 4.895000e-01   p_cons 8.250000e-02   p_joint 1.113500e-01

Outputting figure to mutsig2_images.part000000000080/HPCA.2_594_20000_0.4895_0.0825_0.11135.png
                gene_name: HPCA
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000080
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 80 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4422018: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000081> was used as the working directory.
Started at Wed Oct 24 17:53:13 2012
Results reported at Wed Oct 24 18:07:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000081.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000081.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 81  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000081.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    792.86 sec.
    Max Memory :      5361 MB
    Max Swap   :      7754 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
81
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 81
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 81: processing genes 7239 - 7328
Calculating significance of each gene.
Using projection method.
7239	HPCAL4	1.027258e-01
7240	HPD	1
7241	HPDL	1
7242	HPGD	7.080607e-01
7243	HPGDS	5.430555e-01
7244	HPN	1
7245	HPR	3.367729e-01
7246	HPRT1	4.607878e-01
7247	HPS1	8.716516e-01
7248	HPS3	8.133306e-01
7249	HPS4	9.817257e-01
7250	HPS5	9.843023e-01
7251	HPS6	1
7252	HPSE	1
7253	HPSE2	3.066445e-01
7254	HPX	3.143349e-01
7255	HR	1
7256	HRAS	5.591982e-01
7257	HRASLS	6.391056e-01
7258	HRASLS2	1
7259	HRASLS5	1.905638e-01
7260	HRC	4.255995e-01
7261	HRCT1	1
7262	HRG	7.659959e-02
7263	HRH1	4.719147e-01
7264	HRH2	1.533529e-01
7265	HRH3	8.887611e-01
7266	HRH4	1.930056e-01
7267	HRNR	9.999887e-01
7268	HRSP12	1
7269	HS1BP3	1
7270	HS2ST1	1
7271	HS3ST1	1
7272	HS3ST2	5.717108e-01
7273	HS3ST3A1	9.415793e-02
7274	HS3ST3B1	1
7275	HS3ST4	3.134890e-02
7276	HS3ST5	1.979006e-01
7277	HS3ST6	2.810101e-01
7278	HS6ST1	7.998717e-01
7279	HS6ST2	7.709265e-01
7280	HS6ST3	3.686628e-01
7281	HSBP1	1
7282	HSCB	1
7283	HSD11B1	7.337181e-02
7284	HSD11B1L	1
7285	HSD11B2	9.071615e-01
7286	HSD17B1	1
7287	HSD17B10	1
7288	HSD17B11	1
7289	HSD17B12	6.267182e-01
7290	HSD17B13	6.826608e-01
7291	HSD17B14	1
7292	HSD17B2	4.658580e-01
7293	HSD17B3	1
7294	HSD17B4	8.485309e-01
7295	HSD17B6	4.859781e-01
7296	HSD17B7	6.836360e-01
7297	HSD17B8	1
7298	HSD3B1	1.582573e-01
7299	HSD3B2	6.096210e-03
7300	HSD3B7	6.824689e-01
7301	HSDL1	5.902227e-01
7302	HSDL2	7.898062e-01
7303	HSF1	1
7304	HSF2	8.448284e-01
7305	HSF2BP	1
7306	HSF4	8.856925e-01
7307	HSF5	8.640087e-01
7308	HSH2D	5.638083e-01
7309	HSP90AA1	7.233106e-01
7310	HSP90AB1	8.570236e-01
7311	HSP90B1	1
7312	HSPA12A	8.891872e-01
7313	HSPA12B	1
7314	HSPA13	3.568227e-01
7315	HSPA14	8.125696e-01
7316	HSPA1A	1
7317	HSPA1B	4.515242e-01
7318	HSPA1L	1.611624e-01
7319	HSPA2	7.343367e-01
7320	HSPA4	9.656905e-01
7321	HSPA4L	9.494553e-01
7322	HSPA5	7.286883e-01
7323	HSPA6	1
7324	HSPA8	7.020123e-01
7325	HSPA9	5.575016e-01
7326	HSPB1	4.230417e-01
7327	HSPB11	1
7328	HSPB2	6.072507e-01
Done

Running MutSig 2:
Scatter job 81: processing genes 7239 - 7328
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HRNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
KS ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
HRNR   10000 perm   4 sec   (2319 perm/sec)   p_kst 3.700000e-03   p_cons 9.369000e-01   p_joint 3.640000e-02

Joint ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
Cons ci ratio: 7.219894e-03	ci left: 9.330314e-01	ci right 9.398410e-01	k: 18730	n:20000
KS ci ratio: 4.033559e-01	ci left: 3.754742e-03	ci right 5.693581e-03	k: 93	n:20000
HRNR   20000 perm   12 sec   (1720 perm/sec)   p_kst 4.650000e-03   p_cons 9.365000e-01   p_joint 3.785000e-02

Joint ci ratio: 1.426081e-01	ci left: 2.281229e-02	ci right 2.634727e-02	k: 736	n:30000
Cons ci ratio: 5.829783e-03	ci left: 9.350077e-01	ci right 9.405072e-01	k: 28134	n:30000
KS ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
HRNR   30000 perm   15 sec   (1942 perm/sec)   p_kst 4.433333e-03   p_cons 9.378000e-01   p_joint 2.453333e-02

Joint ci ratio: 1.555683e-01	ci left: 1.440835e-02	ci right 1.686270e-02	k: 624	n:40000
Cons ci ratio: 5.067926e-03	ci left: 9.349308e-01	ci right 9.397055e-01	k: 37494	n:40000
KS ci ratio: 2.844601e-01	ci left: 4.053405e-03	ci right 5.420025e-03	k: 188	n:40000
HRNR   40000 perm   19 sec   (2080 perm/sec)   p_kst 4.700000e-03   p_cons 9.373500e-01   p_joint 1.560000e-02

Joint ci ratio: 1.224023e-01	ci left: 1.886839e-02	ci right 2.134777e-02	k: 1004	n:50000
Cons ci ratio: 4.506076e-03	ci left: 9.358913e-01	ci right 9.401377e-01	k: 46902	n:50000
KS ci ratio: 2.518976e-01	ci left: 4.213085e-03	ci right 5.445488e-03	k: 240	n:50000
HRNR   50000 perm   23 sec   (2170 perm/sec)   p_kst 4.800000e-03   p_cons 9.380400e-01   p_joint 2.008000e-02

Joint ci ratio: 9.708973e-02	ci left: 2.516434e-02	ci right 2.774841e-02	k: 1586	n:60000
Cons ci ratio: 4.125398e-03	ci left: 9.357364e-01	ci right 9.396211e-01	k: 56262	n:60000
KS ci ratio: 2.371436e-01	ci left: 3.995881e-03	ci right 5.086230e-03	k: 271	n:60000
HRNR   60000 perm   27 sec   (2226 perm/sec)   p_kst 4.516667e-03   p_cons 9.377000e-01   p_joint 2.643333e-02

Joint ci ratio: 1.030018e-01	ci left: 1.922630e-02	ci right 2.132802e-02	k: 1418	n:70000
Cons ci ratio: 3.814651e-03	ci left: 9.360289e-01	ci right 9.396204e-01	k: 65649	n:70000
KS ci ratio: 2.152781e-01	ci left: 4.206809e-03	ci right 5.234909e-03	k: 329	n:70000
HRNR   70000 perm   31 sec   (2263 perm/sec)   p_kst 4.700000e-03   p_cons 9.378429e-01   p_joint 2.025714e-02

Joint ci ratio: 9.941896e-02	ci left: 1.811395e-02	ci right 2.002115e-02	k: 1524	n:80000
Cons ci ratio: 3.576430e-03	ci left: 9.358764e-01	ci right 9.392418e-01	k: 75006	n:80000
KS ci ratio: 2.052781e-01	ci left: 4.071714e-03	ci right 5.014771e-03	k: 362	n:80000
HRNR   80000 perm   35 sec   (2289 perm/sec)   p_kst 4.525000e-03   p_cons 9.375750e-01   p_joint 1.905000e-02

Joint ci ratio: 9.949312e-02	ci left: 1.611129e-02	ci right 1.780894e-02	k: 1525	n:90000
Cons ci ratio: 3.365058e-03	ci left: 9.362136e-01	ci right 9.393803e-01	k: 84403	n:90000
KS ci ratio: 1.912866e-01	ci left: 4.200132e-03	ci right 5.098921e-03	k: 417	n:90000
HRNR   90000 perm   39 sec   (2306 perm/sec)   p_kst 4.633333e-03   p_cons 9.378111e-01   p_joint 1.694444e-02

Joint ci ratio: 9.195043e-02	ci left: 1.702859e-02	ci right 1.867955e-02	k: 1784	n:100000
Cons ci ratio: 3.181423e-03	ci left: 9.366999e-01	ci right 9.396946e-01	k: 93821	n:100000
KS ci ratio: 1.716210e-01	ci left: 4.744479e-03	ci right 5.644589e-03	k: 518	n:100000
HRNR   100000 perm   43 sec   (2316 perm/sec)   p_kst 5.180000e-03   p_cons 9.382100e-01   p_joint 1.784000e-02

Joint ci ratio: 1.045519e-01	ci left: 1.195804e-02	ci right 1.328603e-02	k: 1387	n:110000
Cons ci ratio: 3.110639e-03	ci left: 9.337567e-01	ci right 9.366748e-01	k: 102875	n:110000
KS ci ratio: 1.637640e-01	ci left: 4.757350e-03	ci right 5.614512e-03	k: 569	n:110000
HRNR   110000 perm   47 sec   (2321 perm/sec)   p_kst 5.172727e-03   p_cons 9.352273e-01   p_joint 1.260909e-02

Joint ci ratio: 9.947668e-02	ci left: 1.213910e-02	ci right 1.341794e-02	k: 1532	n:120000
Cons ci ratio: 2.975385e-03	ci left: 9.339355e-01	ci right 9.367267e-01	k: 112241	n:120000
KS ci ratio: 1.594986e-01	ci left: 4.608760e-03	ci right 5.415447e-03	k: 600	n:120000
HRNR   120000 perm   52 sec   (2322 perm/sec)   p_kst 5.000000e-03   p_cons 9.353417e-01   p_joint 1.276667e-02

Joint ci ratio: 9.606605e-02	ci left: 1.203826e-02	ci right 1.326054e-02	k: 1643	n:130000
Cons ci ratio: 2.856359e-03	ci left: 9.340890e-01	ci right 9.367685e-01	k: 121607	n:130000
KS ci ratio: 1.523134e-01	ci left: 4.683008e-03	ci right 5.462397e-03	k: 658	n:130000
HRNR   130000 perm   56 sec   (2320 perm/sec)   p_kst 5.061538e-03   p_cons 9.354385e-01   p_joint 1.263846e-02

Joint ci ratio: 9.070773e-02	ci left: 1.256679e-02	ci right 1.376779e-02	k: 1842	n:140000
Cons ci ratio: 2.644649e-03	ci left: 9.388442e-01	ci right 9.413375e-01	k: 131614	n:140000
KS ci ratio: 1.467409e-01	ci left: 4.699169e-03	ci right 5.450126e-03	k: 709	n:140000
HRNR   140000 perm   60 sec   (2316 perm/sec)   p_kst 5.064286e-03   p_cons 9.401000e-01   p_joint 1.315714e-02

Joint ci ratio: 8.981524e-02	ci left: 1.197645e-02	ci right 1.310917e-02	k: 1880	n:150000
Cons ci ratio: 2.557536e-03	ci left: 9.387729e-01	ci right 9.411834e-01	k: 140998	n:150000
KS ci ratio: 1.407199e-01	ci left: 4.784379e-03	ci right 5.514950e-03	k: 771	n:150000
HRNR   150000 perm   65 sec   (2310 perm/sec)   p_kst 5.140000e-03   p_cons 9.399867e-01   p_joint 1.253333e-02

Joint ci ratio: 8.793140e-02	ci left: 1.172897e-02	ci right 1.281381e-02	k: 1962	n:160000
Cons ci ratio: 2.479041e-03	ci left: 9.386865e-01	ci right 9.410226e-01	k: 150378	n:160000
KS ci ratio: 1.360413e-01	ci left: 4.811177e-03	ci right 5.519437e-03	k: 825	n:160000
HRNR   160000 perm   70 sec   (2302 perm/sec)   p_kst 5.156250e-03   p_cons 9.398625e-01   p_joint 1.226250e-02

Joint ci ratio: 8.476630e-02	ci left: 1.189662e-02	ci right 1.295540e-02	k: 2111	n:170000
Cons ci ratio: 2.369228e-03	ci left: 9.404095e-01	ci right 9.426460e-01	k: 160061	n:170000
KS ci ratio: 1.323304e-01	ci left: 4.795354e-03	ci right 5.480513e-03	k: 872	n:170000
HRNR   170000 perm   74 sec   (2294 perm/sec)   p_kst 5.129412e-03   p_cons 9.415353e-01   p_joint 1.241765e-02

Joint ci ratio: 7.878543e-02	ci left: 1.303187e-02	ci right 1.410611e-02	k: 2441	n:180000
Cons ci ratio: 2.305647e-03	ci left: 9.402882e-01	ci right 9.424642e-01	k: 169449	n:180000
KS ci ratio: 1.280017e-01	ci left: 4.851434e-03	ci right 5.520210e-03	k: 932	n:180000
HRNR   180000 perm   79 sec   (2273 perm/sec)   p_kst 5.177778e-03   p_cons 9.413833e-01   p_joint 1.356111e-02

Joint ci ratio: 7.708937e-02	ci left: 1.290845e-02	ci right 1.394858e-02	k: 2550	n:190000
Cons ci ratio: 2.241775e-03	ci left: 9.404354e-01	ci right 9.425511e-01	k: 178885	n:190000
KS ci ratio: 1.241974e-01	ci left: 4.891737e-03	ci right 5.544552e-03	k: 990	n:190000
HRNR   190000 perm   85 sec   (2248 perm/sec)   p_kst 5.210526e-03   p_cons 9.415000e-01   p_joint 1.342105e-02

Joint ci ratio: 7.648038e-02	ci left: 1.246889e-02	ci right 1.346530e-02	k: 2592	n:200000
Cons ci ratio: 2.189863e-03	ci left: 9.402155e-01	ci right 9.422817e-01	k: 188251	n:200000
KS ci ratio: 1.215904e-01	ci left: 4.855535e-03	ci right 5.488938e-03	k: 1033	n:200000
HRNR   200000 perm   89 sec   (2235 perm/sec)   p_kst 5.165000e-03   p_cons 9.412550e-01   p_joint 1.296000e-02

Joint ci ratio: 7.651924e-02	ci left: 1.187032e-02	ci right 1.281940e-02	k: 2591	n:210000
Cons ci ratio: 2.135754e-03	ci left: 9.403102e-01	ci right 9.423253e-01	k: 197678	n:210000
KS ci ratio: 1.193639e-01	ci left: 4.804429e-03	ci right 5.418878e-03	k: 1072	n:210000
HRNR   210000 perm   94 sec   (2224 perm/sec)   p_kst 5.104762e-03   p_cons 9.413238e-01   p_joint 1.233810e-02

Joint ci ratio: 7.480778e-02	ci left: 1.186589e-02	ci right 1.279248e-02	k: 2711	n:220000
Cons ci ratio: 2.086238e-03	ci left: 9.403555e-01	ci right 9.423238e-01	k: 207096	n:220000
KS ci ratio: 1.166766e-01	ci left: 4.806609e-03	ci right 5.406544e-03	k: 1122	n:220000
HRNR   220000 perm   99 sec   (2213 perm/sec)   p_kst 5.100000e-03   p_cons 9.413455e-01   p_joint 1.232273e-02

Joint ci ratio: 7.277814e-02	ci left: 1.200296e-02	ci right 1.291374e-02	k: 2864	n:230000
Cons ci ratio: 2.037280e-03	ci left: 9.405463e-01	ci right 9.424687e-01	k: 216548	n:230000
KS ci ratio: 1.139680e-01	ci left: 4.825639e-03	ci right 5.413026e-03	k: 1176	n:230000
HRNR   230000 perm   104 sec   (2201 perm/sec)   p_kst 5.113043e-03   p_cons 9.415130e-01   p_joint 1.245217e-02

Joint ci ratio: 7.137362e-02	ci left: 1.196926e-02	ci right 1.285924e-02	k: 2978	n:240000
Cons ci ratio: 1.992959e-03	ci left: 9.406460e-01	ci right 9.425266e-01	k: 225982	n:240000
KS ci ratio: 1.117594e-01	ci left: 4.814874e-03	ci right 5.388844e-03	k: 1223	n:240000
HRNR   240000 perm   110 sec   (2189 perm/sec)   p_kst 5.095833e-03   p_cons 9.415917e-01   p_joint 1.240833e-02

Joint ci ratio: 6.555746e-02	ci left: 1.363753e-02	ci right 1.456578e-02	k: 3524	n:250000
Cons ci ratio: 1.954176e-03	ci left: 9.405810e-01	ci right 9.424248e-01	k: 235377	n:250000
KS ci ratio: 1.097179e-01	ci left: 4.801181e-03	ci right 5.362388e-03	k: 1269	n:250000
HRNR   250000 perm   115 sec   (2176 perm/sec)   p_kst 5.076000e-03   p_cons 9.415080e-01   p_joint 1.409600e-02

Joint ci ratio: 6.620666e-02	ci left: 1.286318e-02	ci right 1.374772e-02	k: 3458	n:260000
Cons ci ratio: 1.914825e-03	ci left: 9.406802e-01	ci right 9.424869e-01	k: 244813	n:260000
KS ci ratio: 1.076610e-01	ci left: 4.799858e-03	ci right 5.349725e-03	k: 1318	n:260000
HRNR   260000 perm   120 sec   (2164 perm/sec)   p_kst 5.069231e-03   p_cons 9.415885e-01   p_joint 1.330000e-02

Joint ci ratio: 6.695243e-02	ci left: 1.211710e-02	ci right 1.296008e-02	k: 3384	n:270000
Cons ci ratio: 1.877376e-03	ci left: 9.407947e-01	ci right 9.425662e-01	k: 254255	n:270000
KS ci ratio: 1.054834e-01	ci left: 4.820362e-03	ci right 5.360716e-03	k: 1373	n:270000
HRNR   270000 perm   126 sec   (2150 perm/sec)   p_kst 5.085185e-03   p_cons 9.416852e-01   p_joint 1.253333e-02

Joint ci ratio: 6.180324e-02	ci left: 1.372632e-02	ci right 1.460520e-02	k: 3965	n:280000
Cons ci ratio: 1.843416e-03	ci left: 9.408186e-01	ci right 9.425580e-01	k: 263674	n:280000
KS ci ratio: 1.036517e-01	ci left: 4.818629e-03	ci right 5.348837e-03	k: 1422	n:280000
HRNR   280000 perm   131 sec   (2138 perm/sec)   p_kst 5.078571e-03   p_cons 9.416929e-01   p_joint 1.416071e-02

Joint ci ratio: 6.312221e-02	ci left: 1.270968e-02	ci right 1.354147e-02	k: 3805	n:290000
Cons ci ratio: 1.811918e-03	ci left: 9.407994e-01	ci right 9.425090e-01	k: 273081	n:290000
KS ci ratio: 1.021567e-01	ci left: 4.793566e-03	ci right 5.312952e-03	k: 1464	n:290000
HRNR   290000 perm   136 sec   (2126 perm/sec)   p_kst 5.048276e-03   p_cons 9.416586e-01   p_joint 1.312069e-02

Joint ci ratio: 5.973104e-02	ci left: 1.373039e-02	ci right 1.457903e-02	k: 4245	n:300000
Cons ci ratio: 1.782250e-03	ci left: 9.407650e-01	ci right 9.424465e-01	k: 282483	n:300000
KS ci ratio: 1.006909e-01	ci left: 4.773476e-03	ci right 5.282825e-03	k: 1507	n:300000
HRNR   300000 perm   142 sec   (2113 perm/sec)   p_kst 5.023333e-03   p_cons 9.416100e-01   p_joint 1.415000e-02

Joint ci ratio: 6.071636e-02	ci left: 1.286473e-02	ci right 1.367344e-02	k: 4112	n:310000
Cons ci ratio: 1.754455e-03	ci left: 9.407038e-01	ci right 9.423589e-01	k: 291876	n:310000
KS ci ratio: 9.858625e-02	ci left: 4.823951e-03	ci right 5.327305e-03	k: 1572	n:310000
HRNR   310000 perm   148 sec   (2101 perm/sec)   p_kst 5.070968e-03   p_cons 9.415355e-01   p_joint 1.326452e-02

Outputting figure to mutsig2_images.part000000000081/HRNR.50_8561_310000_0.005071_0.94154_0.013265.png
                gene_name: HRNR
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0053 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 2 percent done.
HSD3B2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
Cons ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
KS ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
HSD3B2   10000 perm   2 sec   (6131 perm/sec)   p_kst 7.322000e-01   p_cons 1.970000e-02   p_joint 6.830000e-02

Joint ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
Cons ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
KS ci ratio: 1.579838e-02	ci left: 7.487760e-01	ci right 7.607499e-01	k: 15096	n:20000
HSD3B2   20000 perm   4 sec   (5527 perm/sec)   p_kst 7.548000e-01   p_cons 1.785000e-02   p_joint 5.465000e-02

Joint ci ratio: 8.900205e-02	ci left: 5.802398e-02	ci right 6.346147e-02	k: 1821	n:30000
Cons ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
KS ci ratio: 1.303988e-02	ci left: 7.458310e-01	ci right 7.556538e-01	k: 22523	n:30000
HSD3B2   30000 perm   6 sec   (5288 perm/sec)   p_kst 7.507667e-01   p_cons 1.756667e-02   p_joint 6.070000e-02

Joint ci ratio: 6.129969e-02	ci left: 8.989973e-02	ci right 9.560955e-02	k: 3709	n:40000
Cons ci ratio: 1.470722e-01	ci left: 1.616533e-02	ci right 1.875540e-02	k: 697	n:40000
KS ci ratio: 1.130546e-02	ci left: 7.460780e-01	ci right 7.545857e-01	k: 30014	n:40000
HSD3B2   40000 perm   8 sec   (5103 perm/sec)   p_kst 7.503500e-01   p_cons 1.742500e-02   p_joint 9.272500e-02

Joint ci ratio: 5.925624e-02	ci left: 7.809023e-02	ci right 8.287861e-02	k: 4023	n:50000
Cons ci ratio: 1.315073e-01	ci left: 1.631068e-02	ci right 1.862583e-02	k: 872	n:50000
KS ci ratio: 1.007602e-02	ci left: 7.478685e-01	ci right 7.554622e-01	k: 37584	n:50000
HSD3B2   50000 perm   10 sec   (4986 perm/sec)   p_kst 7.516800e-01   p_cons 1.744000e-02   p_joint 8.046000e-02

Joint ci ratio: 5.754668e-02	ci left: 6.971388e-02	ci right 7.386099e-02	k: 4306	n:60000
Cons ci ratio: 1.210888e-01	ci left: 1.612623e-02	ci right 1.822084e-02	k: 1029	n:60000
KS ci ratio: 9.228416e-03	ci left: 7.469669e-01	ci right 7.539088e-01	k: 45027	n:60000
HSD3B2   60000 perm   12 sec   (4872 perm/sec)   p_kst 7.504500e-01   p_cons 1.715000e-02   p_joint 7.176667e-02

Joint ci ratio: 5.805789e-02	ci left: 5.936495e-02	ci right 6.292868e-02	k: 4279	n:70000
Cons ci ratio: 1.119960e-01	ci left: 1.623586e-02	ci right 1.817588e-02	k: 1203	n:70000
KS ci ratio: 8.534244e-03	ci left: 7.476499e-01	ci right 7.540721e-01	k: 52561	n:70000
HSD3B2   70000 perm   15 sec   (4766 perm/sec)   p_kst 7.508714e-01   p_cons 1.718571e-02   p_joint 6.112857e-02

Joint ci ratio: 5.513181e-02	ci left: 5.779648e-02	ci right 6.108556e-02	k: 4754	n:80000
Cons ci ratio: 1.038828e-01	ci left: 1.657828e-02	ci right 1.840695e-02	k: 1398	n:80000
KS ci ratio: 7.998183e-03	ci left: 7.471473e-01	ci right 7.531596e-01	k: 60013	n:80000
HSD3B2   80000 perm   17 sec   (4685 perm/sec)   p_kst 7.501625e-01   p_cons 1.747500e-02   p_joint 5.942500e-02

Joint ci ratio: 5.124626e-02	ci left: 5.947795e-02	ci right 6.261708e-02	k: 5493	n:90000
Cons ci ratio: 9.787448e-02	ci left: 1.665335e-02	ci right 1.837794e-02	k: 1575	n:90000
KS ci ratio: 7.552747e-03	ci left: 7.467225e-01	ci right 7.523947e-01	k: 67461	n:90000
HSD3B2   90000 perm   20 sec   (4609 perm/sec)   p_kst 7.495667e-01   p_cons 1.750000e-02   p_joint 6.103333e-02

Outputting figure to mutsig2_images.part000000000081/HSD3B2.11_1131_90000_0.74957_0.0175_0.061033.png
                gene_name: HSD3B2
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 4 percent done.
HRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
Cons ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
HRG   10000 perm   2 sec   (5938 perm/sec)   p_kst 1.351000e-01   p_cons 4.037000e-01   p_joint 1.751000e-01

Outputting figure to mutsig2_images.part000000000081/HRG.9_1606_10000_0.1351_0.4037_0.1751.png
                gene_name: HRG
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 6 percent done.
HS3ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HS3ST5   10000 perm   2 sec   (6267 perm/sec)   p_kst 1   p_cons 6.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HS3ST5.9_1049_10000_1_0.6173_1.png
                gene_name: HS3ST5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
HPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
Cons ci ratio: 5.840080e-02	ci left: 3.014375e-01	ci right 3.196729e-01	k: 3105	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
HPS5   10000 perm   2 sec   (4963 perm/sec)   p_kst 3.020000e-02   p_cons 3.105000e-01   p_joint 3.710000e-02

Joint ci ratio: 1.143447e-01	ci left: 5.231807e-02	ci right 5.871192e-02	k: 1109	n:20000
Cons ci ratio: 4.131018e-02	ci left: 3.039909e-01	ci right 3.168642e-01	k: 6208	n:20000
KS ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
HPS5   20000 perm   4 sec   (4572 perm/sec)   p_kst 2.925000e-02   p_cons 3.104000e-01   p_joint 5.545000e-02

Joint ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
Cons ci ratio: 3.397144e-02	ci left: 3.021477e-01	ci right 3.126230e-01	k: 9221	n:30000
KS ci ratio: 1.323742e-01	ci left: 2.651715e-02	ci right 3.030825e-02	k: 851	n:30000
HPS5   30000 perm   7 sec   (4482 perm/sec)   p_kst 2.836667e-02   p_cons 3.073667e-01   p_joint 4.506667e-02

Joint ci ratio: 1.031064e-01	ci left: 3.307405e-02	ci right 3.669388e-02	k: 1394	n:40000
Cons ci ratio: 2.931340e-02	ci left: 3.043985e-01	ci right 3.134793e-01	k: 12357	n:40000
KS ci ratio: 1.144843e-01	ci left: 2.684254e-02	ci right 3.012639e-02	k: 1138	n:40000
HPS5   40000 perm   9 sec   (4407 perm/sec)   p_kst 2.845000e-02   p_cons 3.089250e-01   p_joint 3.485000e-02

Joint ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
Cons ci ratio: 2.620950e-02	ci left: 3.050306e-01	ci right 3.131515e-01	k: 15454	n:50000
KS ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
HPS5   50000 perm   11 sec   (4354 perm/sec)   p_kst 2.760000e-02   p_cons 3.090800e-01   p_joint 3.026000e-02

Joint ci ratio: 8.249578e-02	ci left: 3.476856e-02	ci right 3.777651e-02	k: 2175	n:60000
Cons ci ratio: 2.402428e-02	ci left: 3.036426e-01	ci right 3.110427e-01	k: 18440	n:60000
KS ci ratio: 9.426017e-02	ci left: 2.669450e-02	ci right 2.935141e-02	k: 1680	n:60000
HPS5   60000 perm   14 sec   (4291 perm/sec)   p_kst 2.800000e-02   p_cons 3.073333e-01   p_joint 3.625000e-02

Outputting figure to mutsig2_images.part000000000081/HPS5.7_3478_60000_0.028_0.30733_0.03625.png
                gene_name: HPS5
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 10 percent done.
HSD3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
Cons ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
KS ci ratio: 2.788918e-02	ci left: 6.545449e-01	ci right 6.731595e-01	k: 6639	n:10000
HSD3B1   10000 perm   2 sec   (6271 perm/sec)   p_kst 6.639000e-01   p_cons 1.859000e-01   p_joint 4.254000e-01

Outputting figure to mutsig2_images.part000000000081/HSD3B1.7_1134_10000_0.6639_0.1859_0.4254.png
                gene_name: HSD3B1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 12 percent done.
HPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
HPS3   10000 perm   2 sec   (5364 perm/sec)   p_kst 1.930000e-01   p_cons 3.950000e-02   p_joint 8.700000e-02

Joint ci ratio: 8.789646e-02	ci left: 8.646061e-02	ci right 9.445892e-02	k: 1808	n:20000
Cons ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
KS ci ratio: 5.753960e-02	ci left: 1.829024e-01	ci right 1.937884e-01	k: 3766	n:20000
HPS3   20000 perm   4 sec   (4878 perm/sec)   p_kst 1.883000e-01   p_cons 4.015000e-02   p_joint 9.040000e-02

Joint ci ratio: 8.112933e-02	ci left: 6.926340e-02	ci right 7.515310e-02	k: 2165	n:30000
Cons ci ratio: 1.110173e-01	ci left: 3.768076e-02	ci right 4.214224e-02	k: 1196	n:30000
KS ci ratio: 4.661302e-02	ci left: 1.863010e-01	ci right 1.952256e-01	k: 5722	n:30000
HPS3   30000 perm   6 sec   (4695 perm/sec)   p_kst 1.907333e-01   p_cons 3.986667e-02   p_joint 7.216667e-02

Joint ci ratio: 7.506448e-02	ci left: 6.142419e-02	ci right 6.623937e-02	k: 2552	n:40000
Cons ci ratio: 1.031064e-01	ci left: 3.307405e-02	ci right 3.669388e-02	k: 1394	n:40000
KS ci ratio: 4.045552e-02	ci left: 1.862400e-01	ci right 1.939550e-01	k: 7603	n:40000
HPS3   40000 perm   9 sec   (4571 perm/sec)   p_kst 1.900750e-01   p_cons 3.485000e-02   p_joint 6.380000e-02

Joint ci ratio: 5.741403e-02	ci left: 8.282628e-02	ci right 8.774200e-02	k: 4263	n:50000
Cons ci ratio: 9.210516e-02	ci left: 3.334751e-02	ci right 3.658678e-02	k: 1747	n:50000
KS ci ratio: 3.623164e-02	ci left: 1.862517e-01	ci right 1.931444e-01	k: 9484	n:50000
HPS3   50000 perm   11 sec   (4461 perm/sec)   p_kst 1.896800e-01   p_cons 3.494000e-02   p_joint 8.526000e-02

Outputting figure to mutsig2_images.part000000000081/HPS3.6_3083_50000_0.18968_0.03494_0.08526.png
                gene_name: HPS3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 15 percent done.
HPS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
Cons ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
KS ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
HPS4   10000 perm   2 sec   (5688 perm/sec)   p_kst 6.911000e-01   p_cons 5.533000e-01   p_joint 8.424000e-01

Outputting figure to mutsig2_images.part000000000081/HPS4.6_2205_10000_0.6911_0.5533_0.8424.png
                gene_name: HPS4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 17 percent done.
HPSE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
Cons ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
HPSE2   10000 perm   2 sec   (5812 perm/sec)   p_kst 5.058000e-01   p_cons 9.445000e-01   p_joint 7.087000e-01

Outputting figure to mutsig2_images.part000000000081/HPSE2.6_1865_10000_0.5058_0.9445_0.7087.png
                gene_name: HPSE2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 19 percent done.
HPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
KS ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
HPX   10000 perm   2 sec   (6580 perm/sec)   p_kst 1.479000e-01   p_cons 6.484000e-01   p_joint 2.859000e-01

Outputting figure to mutsig2_images.part000000000081/HPX.6_1429_10000_0.1479_0.6484_0.2859.png
                gene_name: HPX
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 21 percent done.
HRH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
Cons ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
KS ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
HRH1   10000 perm   2 sec   (6268 perm/sec)   p_kst 2.665000e-01   p_cons 3.517000e-01   p_joint 3.830000e-01

Outputting figure to mutsig2_images.part000000000081/HRH1.6_1468_10000_0.2665_0.3517_0.383.png
                gene_name: HRH1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 23 percent done.
HRH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
Cons ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
KS ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
HRH2   10000 perm   1 sec   (6677 perm/sec)   p_kst 3.024000e-01   p_cons 7.520000e-01   p_joint 5.640000e-01

Outputting figure to mutsig2_images.part000000000081/HRH2.6_1206_10000_0.3024_0.752_0.564.png
                gene_name: HRH2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 25 percent done.
HSPA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
HSPA1L   10000 perm   1 sec   (6697 perm/sec)   p_kst 4.567000e-01   p_cons 6.906000e-01   p_joint 9.034000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA1L.6_1930_10000_0.4567_0.6906_0.9034.png
                gene_name: HSPA1L
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 27 percent done.
HRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
Cons ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
KS ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
HRC   10000 perm   2 sec   (5887 perm/sec)   p_kst 8.420000e-02   p_cons 9.007000e-01   p_joint 2.425000e-01

Joint ci ratio: 6.855648e-02	ci left: 1.356621e-01	ci right 1.453426e-01	k: 2809	n:20000
Cons ci ratio: 8.787606e-03	ci left: 9.046235e-01	ci right 9.126573e-01	k: 18174	n:20000
KS ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
HRC   20000 perm   4 sec   (5204 perm/sec)   p_kst 8.115000e-02   p_cons 9.087000e-01   p_joint 1.404500e-01

Outputting figure to mutsig2_images.part000000000081/HRC.5_2124_20000_0.08115_0.9087_0.14045.png
                gene_name: HRC
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 29 percent done.
HS3ST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
Cons ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
HS3ST4   10000 perm   2 sec   (6106 perm/sec)   p_kst 6.950000e-02   p_cons 3.593000e-01   p_joint 9.200000e-02

Joint ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
Cons ci ratio: 3.712321e-02	ci left: 3.512523e-01	ci right 3.645891e-01	k: 7158	n:20000
KS ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
HS3ST4   20000 perm   4 sec   (5668 perm/sec)   p_kst 7.025000e-02   p_cons 3.579000e-01   p_joint 7.350000e-02

Joint ci ratio: 6.737272e-02	ci left: 9.797344e-02	ci right 1.048373e-01	k: 3041	n:30000
Cons ci ratio: 3.028569e-02	ci left: 3.528713e-01	ci right 3.637561e-01	k: 10749	n:30000
KS ci ratio: 8.272519e-02	ci left: 6.674555e-02	ci right 7.253813e-02	k: 2088	n:30000
HS3ST4   30000 perm   5 sec   (5478 perm/sec)   p_kst 6.960000e-02   p_cons 3.583000e-01   p_joint 1.013667e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST4.5_1379_30000_0.0696_0.3583_0.10137.png
                gene_name: HS3ST4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 31 percent done.
HS6ST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
Cons ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
KS ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
HS6ST3   10000 perm   2 sec   (5680 perm/sec)   p_kst 8.060000e-02   p_cons 2.875000e-01   p_joint 1.500000e-01

Joint ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
Cons ci ratio: 4.282446e-02	ci left: 2.888836e-01	ci right 3.015760e-01	k: 5904	n:20000
KS ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
HS6ST3   20000 perm   4 sec   (5073 perm/sec)   p_kst 8.080000e-02   p_cons 2.952000e-01   p_joint 1.235500e-01

Outputting figure to mutsig2_images.part000000000081/HS6ST3.5_1424_20000_0.0808_0.2952_0.12355.png
                gene_name: HS6ST3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 33 percent done.
HSD17B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280672e-02	ci left: 7.384593e-01	ci right 7.555965e-01	k: 7471	n:10000
Cons ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
KS ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
HSD17B4   10000 perm   2 sec   (5403 perm/sec)   p_kst 6.545000e-01   p_cons 5.126000e-01   p_joint 7.471000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B4.5_2307_10000_0.6545_0.5126_0.7471.png
                gene_name: HSD17B4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 35 percent done.
HSP90AA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
HSP90AA1   10000 perm   2 sec   (5653 perm/sec)   p_kst 7.357000e-01   p_cons 1.941000e-01   p_joint 4.912000e-01

Outputting figure to mutsig2_images.part000000000081/HSP90AA1.5_2613_10000_0.7357_0.1941_0.4912.png
                gene_name: HSP90AA1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 38 percent done.
HRH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.792162e-02	ci left: 5.066519e-01	ci right 5.263385e-01	k: 5165	n:10000
KS ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
HRH4   10000 perm   2 sec   (5946 perm/sec)   p_kst 8.520000e-01   p_cons 5.165000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HRH4.4_1185_10000_0.852_0.5165_1.png
                gene_name: HRH4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
HS3ST3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
KS ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
HS3ST3A1   10000 perm   2 sec   (5861 perm/sec)   p_kst 3.369000e-01   p_cons 7.625000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST3A1.4_1229_10000_0.3369_0.7625_0.6098.png
                gene_name: HS3ST3A1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 42 percent done.
HSD11B1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
Cons ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
HSD11B1   10000 perm   1 sec   (7105 perm/sec)   p_kst 1.447000e-01   p_cons 2.482000e-01   p_joint 1.747000e-01

Outputting figure to mutsig2_images.part000000000081/HSD11B1.3_903_10000_0.1447_0.2482_0.1747.png
                gene_name: HSD11B1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 44 percent done.
HSPA12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
Cons ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
KS ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
HSPA12A   10000 perm   2 sec   (5358 perm/sec)   p_kst 8.419000e-01   p_cons 1.474000e-01   p_joint 6.773000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA12A.4_2076_10000_0.8419_0.1474_0.6773.png
                gene_name: HSPA12A
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 46 percent done.
HSPA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
KS ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
HSPA5   10000 perm   2 sec   (5600 perm/sec)   p_kst 4.840000e-02   p_cons 3.503000e-01   p_joint 9.340000e-02

Joint ci ratio: 8.364291e-02	ci left: 9.479621e-02	ci right 1.031208e-01	k: 1978	n:20000
Cons ci ratio: 3.769540e-02	ci left: 3.442828e-01	ci right 3.575606e-01	k: 7018	n:20000
KS ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
HSPA5   20000 perm   4 sec   (4984 perm/sec)   p_kst 4.560000e-02   p_cons 3.509000e-01   p_joint 9.890000e-02

Joint ci ratio: 5.594557e-02	ci left: 1.366848e-01	ci right 1.445850e-01	k: 4218	n:30000
Cons ci ratio: 3.097165e-02	ci left: 3.426745e-01	ci right 3.534882e-01	k: 10442	n:30000
KS ci ratio: 1.049942e-01	ci left: 4.206419e-02	ci right 4.675789e-02	k: 1331	n:30000
HSPA5   30000 perm   6 sec   (4987 perm/sec)   p_kst 4.436667e-02   p_cons 3.480667e-01   p_joint 1.406000e-01

Joint ci ratio: 5.697300e-02	ci left: 1.028019e-01	ci right 1.088554e-01	k: 4232	n:40000
Cons ci ratio: 2.675588e-02	ci left: 3.445268e-01	ci right 3.538951e-01	k: 13968	n:40000
KS ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
HSPA5   40000 perm   8 sec   (4961 perm/sec)   p_kst 4.377500e-02   p_cons 3.492000e-01   p_joint 1.058000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA5.4_1997_40000_0.043775_0.3492_0.1058.png
                gene_name: HSPA5
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 48 percent done.
HPCAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
KS ci ratio: 3.302639e-02	ci left: 5.750686e-01	ci right 5.944820e-01	k: 5848	n:10000
HPCAL4   10000 perm   1 sec   (7671 perm/sec)   p_kst 5.848000e-01   p_cons 4.253000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HPCAL4.3_588_10000_0.5848_0.4253_1.png
                gene_name: HPCAL4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
HPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
HPR   10000 perm   1 sec   (7802 perm/sec)   p_kst 1.387000e-01   p_cons 9.826000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000081/HPR.3_1067_10000_0.1387_0.9826_0.3088.png
                gene_name: HPR
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 52 percent done.
HPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788918e-02	ci left: 6.545449e-01	ci right 6.731595e-01	k: 6639	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
HPS1   10000 perm   2 sec   (6532 perm/sec)   p_kst 8.953000e-01   p_cons 2.948000e-01   p_joint 6.639000e-01

Outputting figure to mutsig2_images.part000000000081/HPS1.3_2213_10000_0.8953_0.2948_0.6639.png
                gene_name: HPS1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 54 percent done.
HR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
Cons ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
KS ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
HR   10000 perm   2 sec   (6153 perm/sec)   p_kst 4.662000e-01   p_cons 9.876000e-01   p_joint 8.129000e-01

Outputting figure to mutsig2_images.part000000000081/HR.3_3642_10000_0.4662_0.9876_0.8129.png
                gene_name: HR
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
HRASLS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
HRASLS5   10000 perm   2 sec   (6402 perm/sec)   p_kst 3.361000e-01   p_cons 1.790000e-02   p_joint 1.001000e-01

Joint ci ratio: 1.185896e-01	ci left: 4.872026e-02	ci right 5.491086e-02	k: 1035	n:20000
Cons ci ratio: 2.005164e-01	ci left: 1.686783e-02	ci right 2.067391e-02	k: 374	n:20000
KS ci ratio: 3.931346e-02	ci left: 3.254732e-01	ci right 3.385757e-01	k: 6640	n:20000
HRASLS5   20000 perm   3 sec   (5937 perm/sec)   p_kst 3.320000e-01   p_cons 1.870000e-02   p_joint 5.175000e-02

Joint ci ratio: 6.978492e-02	ci left: 9.183592e-02	ci right 9.850938e-02	k: 2854	n:30000
Cons ci ratio: 1.803684e-01	ci left: 1.410070e-02	ci right 1.692759e-02	k: 464	n:30000
KS ci ratio: 3.212223e-02	ci left: 3.263721e-01	ci right 3.370605e-01	k: 9951	n:30000
HRASLS5   30000 perm   5 sec   (5770 perm/sec)   p_kst 3.317000e-01   p_cons 1.546667e-02   p_joint 9.513333e-02

Joint ci ratio: 7.547585e-02	ci left: 6.078564e-02	ci right 6.557801e-02	k: 2526	n:40000
Cons ci ratio: 1.551904e-01	ci left: 1.448047e-02	ci right 1.694056e-02	k: 627	n:40000
KS ci ratio: 2.791831e-02	ci left: 3.255165e-01	ci right 3.347581e-01	k: 13205	n:40000
HRASLS5   40000 perm   7 sec   (5639 perm/sec)   p_kst 3.301250e-01   p_cons 1.567500e-02   p_joint 6.315000e-02

Joint ci ratio: 7.820897e-02	ci left: 4.596593e-02	ci right 4.972679e-02	k: 2391	n:50000
Cons ci ratio: 1.380937e-01	ci left: 1.476378e-02	ci right 1.697294e-02	k: 792	n:50000
KS ci ratio: 2.500198e-02	ci left: 3.254598e-01	ci right 3.337200e-01	k: 16479	n:50000
HRASLS5   50000 perm   9 sec   (5521 perm/sec)   p_kst 3.295800e-01   p_cons 1.584000e-02   p_joint 4.782000e-02

Joint ci ratio: 8.224120e-02	ci left: 3.498092e-02	ci right 3.799746e-02	k: 2188	n:60000
Cons ci ratio: 1.269184e-01	ci left: 1.465587e-02	ci right 1.665804e-02	k: 938	n:60000
KS ci ratio: 2.277804e-02	ci left: 3.267028e-01	ci right 3.342469e-01	k: 19828	n:60000
HRASLS5   60000 perm   11 sec   (5415 perm/sec)   p_kst 3.304667e-01   p_cons 1.563333e-02   p_joint 3.646667e-02

Joint ci ratio: 6.097136e-02	ci left: 5.405459e-02	ci right 5.746807e-02	k: 3902	n:70000
Cons ci ratio: 1.180799e-01	ci left: 1.458400e-02	ci right 1.642790e-02	k: 1084	n:70000
KS ci ratio: 2.111415e-02	ci left: 3.264454e-01	ci right 3.334258e-01	k: 23095	n:70000
HRASLS5   70000 perm   13 sec   (5308 perm/sec)   p_kst 3.299286e-01   p_cons 1.548571e-02   p_joint 5.574286e-02

Joint ci ratio: 5.912294e-02	ci left: 5.054543e-02	ci right 5.363716e-02	k: 4166	n:80000
Cons ci ratio: 1.099594e-01	ci left: 1.477695e-02	ci right 1.650843e-02	k: 1250	n:80000
KS ci ratio: 1.971559e-02	ci left: 3.274523e-01	ci right 3.339850e-01	k: 26457	n:80000
HRASLS5   80000 perm   15 sec   (5205 perm/sec)   p_kst 3.307125e-01   p_cons 1.562500e-02   p_joint 5.207500e-02

Joint ci ratio: 6.249153e-02	ci left: 4.057834e-02	ci right 4.320685e-02	k: 3769	n:90000
Cons ci ratio: 1.037973e-01	ci left: 1.478965e-02	ci right 1.641957e-02	k: 1403	n:90000
KS ci ratio: 1.857463e-02	ci left: 3.279588e-01	ci right 3.341187e-01	k: 29793	n:90000
HRASLS5   90000 perm   18 sec   (5109 perm/sec)   p_kst 3.310333e-01   p_cons 1.558889e-02   p_joint 4.187778e-02

Joint ci ratio: 5.597534e-02	ci left: 4.543989e-02	ci right 4.806648e-02	k: 4674	n:100000
Cons ci ratio: 9.876060e-02	ci left: 1.474344e-02	ci right 1.628485e-02	k: 1550	n:100000
KS ci ratio: 1.761287e-02	ci left: 3.283328e-01	ci right 3.341770e-01	k: 33125	n:100000
HRASLS5   100000 perm   20 sec   (5020 perm/sec)   p_kst 3.312500e-01   p_cons 1.550000e-02   p_joint 4.674000e-02

Outputting figure to mutsig2_images.part000000000081/HRASLS5.3_864_100000_0.33125_0.0155_0.04674.png
                gene_name: HRASLS5
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 58 percent done.
HSD17B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
Cons ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
KS ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
HSD17B2   10000 perm   2 sec   (6487 perm/sec)   p_kst 4.199000e-01   p_cons 7.004000e-01   p_joint 5.358000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B2.3_1184_10000_0.4199_0.7004_0.5358.png
                gene_name: HSD17B2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 60 percent done.
HSDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
KS ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
HSDL1   10000 perm   2 sec   (6550 perm/sec)   p_kst 4.440000e-02   p_cons 9.860000e-02   p_joint 3.640000e-02

Joint ci ratio: 1.294313e-01	ci left: 4.100525e-02	ci right 4.672831e-02	k: 876	n:20000
Cons ci ratio: 8.768346e-02	ci left: 8.685265e-02	ci right 9.486676e-02	k: 1816	n:20000
KS ci ratio: 1.274676e-01	ci left: 4.226524e-02	ci right 4.806793e-02	k: 902	n:20000
HSDL1   20000 perm   3 sec   (6039 perm/sec)   p_kst 4.510000e-02   p_cons 9.080000e-02   p_joint 4.380000e-02

Joint ci ratio: 1.143939e-01	ci left: 3.550805e-02	ci right 3.984874e-02	k: 1129	n:30000
Cons ci ratio: 6.965019e-02	ci left: 9.216402e-02	ci right 9.884788e-02	k: 2864	n:30000
KS ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
HSDL1   30000 perm   5 sec   (5794 perm/sec)   p_kst 4.230000e-02   p_cons 9.546667e-02   p_joint 3.763333e-02

Joint ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
Cons ci ratio: 6.045912e-02	ci left: 9.221750e-02	ci right 9.799144e-02	k: 3803	n:40000
KS ci ratio: 9.407579e-02	ci left: 3.963964e-02	ci right 4.357726e-02	k: 1663	n:40000
HSDL1   40000 perm   7 sec   (5633 perm/sec)   p_kst 4.157500e-02   p_cons 9.507500e-02   p_joint 1.527500e-02

Joint ci ratio: 1.317379e-01	ci left: 1.625262e-02	ci right 1.856389e-02	k: 869	n:50000
Cons ci ratio: 5.405754e-02	ci left: 9.258177e-02	ci right 9.774535e-02	k: 4757	n:50000
KS ci ratio: 8.422867e-02	ci left: 3.976850e-02	ci right 4.328499e-02	k: 2075	n:50000
HSDL1   50000 perm   9 sec   (5506 perm/sec)   p_kst 4.150000e-02   p_cons 9.514000e-02   p_joint 1.738000e-02

Joint ci ratio: 9.469573e-02	ci left: 2.645025e-02	ci right 2.909569e-02	k: 1665	n:60000
Cons ci ratio: 4.947990e-02	ci left: 9.235198e-02	ci right 9.705397e-02	k: 5681	n:60000
KS ci ratio: 7.700620e-02	ci left: 3.980351e-02	ci right 4.300771e-02	k: 2483	n:60000
HSDL1   60000 perm   11 sec   (5387 perm/sec)   p_kst 4.138333e-02   p_cons 9.468333e-02   p_joint 2.775000e-02

Outputting figure to mutsig2_images.part000000000081/HSDL1.3_1009_60000_0.041383_0.094683_0.02775.png
                gene_name: HSDL1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 62 percent done.
HSP90AB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
KS ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
HSP90AB1   10000 perm   1 sec   (6738 perm/sec)   p_kst 6.269000e-01   p_cons 4.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSP90AB1.3_2219_10000_0.6269_0.4003_1.png
                gene_name: HSP90AB1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
HSPA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
Cons ci ratio: 1.587755e-02	ci left: 8.521264e-01	ci right 8.658638e-01	k: 8591	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
HSPA13   10000 perm   1 sec   (7088 perm/sec)   p_kst 8.940000e-02   p_cons 8.591000e-01   p_joint 1.705000e-01

Joint ci ratio: 6.338064e-02	ci left: 1.554374e-01	ci right 1.656615e-01	k: 3210	n:20000
Cons ci ratio: 1.108218e-02	ci left: 8.573453e-01	ci right 8.669492e-01	k: 17244	n:20000
KS ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
HSPA13   20000 perm   3 sec   (6286 perm/sec)   p_kst 9.160000e-02   p_cons 8.622000e-01   p_joint 1.605000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA13.3_1436_20000_0.0916_0.8622_0.1605.png
                gene_name: HSPA13
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
HSPA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
HSPA14   10000 perm   2 sec   (6097 perm/sec)   p_kst 8.080000e-02   p_cons 1.466000e-01   p_joint 4.950000e-02

Joint ci ratio: 7.293562e-02	ci left: 1.215781e-01	ci right 1.308308e-01	k: 2523	n:20000
Cons ci ratio: 6.738898e-02	ci left: 1.398020e-01	ci right 1.496015e-01	k: 2893	n:20000
KS ci ratio: 9.105888e-02	ci left: 8.092569e-02	ci right 8.869552e-02	k: 1695	n:20000
HSPA14   20000 perm   4 sec   (5483 perm/sec)   p_kst 8.475000e-02   p_cons 1.446500e-01   p_joint 1.261500e-01

Outputting figure to mutsig2_images.part000000000081/HSPA14.3_1586_20000_0.08475_0.14465_0.12615.png
                gene_name: HSPA14
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 69 percent done.
HSPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
Cons ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
KS ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
HSPA2   10000 perm   2 sec   (5936 perm/sec)   p_kst 1.322000e-01   p_cons 2.812000e-01   p_joint 2.249000e-01

Joint ci ratio: 6.340416e-02	ci left: 1.553387e-01	ci right 1.655602e-01	k: 3208	n:20000
Cons ci ratio: 4.459766e-02	ci left: 2.723944e-01	ci right 2.848700e-01	k: 5572	n:20000
KS ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
HSPA2   20000 perm   4 sec   (5333 perm/sec)   p_kst 1.293000e-01   p_cons 2.786000e-01   p_joint 1.604000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA2.3_1924_20000_0.1293_0.2786_0.1604.png
                gene_name: HSPA2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
HSPA4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
Cons ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
KS ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
HSPA4L   10000 perm   2 sec   (5399 perm/sec)   p_kst 6.017000e-01   p_cons 4.294000e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA4L.3_2596_10000_0.6017_0.4294_0.606.png
                gene_name: HSPA4L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 73 percent done.
HSPA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
Cons ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
KS ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
HSPA8   10000 perm   2 sec   (5912 perm/sec)   p_kst 2.523000e-01   p_cons 6.738000e-01   p_joint 3.883000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA8.3_1973_10000_0.2523_0.6738_0.3883.png
                gene_name: HSPA8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 75 percent done.
HSPA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
HSPA9   10000 perm   2 sec   (5889 perm/sec)   p_kst 6.004000e-01   p_cons 6.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSPA9.3_2108_10000_0.6004_0.6091_1.png
                gene_name: HSPA9
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
HPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
HPD   10000 perm   2 sec   (6402 perm/sec)   p_kst 7.010000e-02   p_cons 3.201000e-01   p_joint 8.664000e-01

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 4.075714e-02	ci left: 3.097578e-01	ci right 3.226957e-01	k: 6324	n:20000
KS ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
HPD   20000 perm   4 sec   (5692 perm/sec)   p_kst 6.965000e-02   p_cons 3.162000e-01   p_joint 7.885000e-02

Joint ci ratio: 7.692256e-02	ci left: 7.659400e-02	ci right 8.275436e-02	k: 2389	n:30000
Cons ci ratio: 3.362098e-02	ci left: 3.065599e-01	ci right 3.170765e-01	k: 9354	n:30000
KS ci ratio: 8.226056e-02	ci left: 6.746482e-02	ci right 7.328538e-02	k: 2110	n:30000
HPD   30000 perm   6 sec   (5412 perm/sec)   p_kst 7.033333e-02   p_cons 3.118000e-01   p_joint 7.963333e-02

Outputting figure to mutsig2_images.part000000000081/HPD.2_1238_30000_0.070333_0.3118_0.079633.png
                gene_name: HPD
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 79 percent done.
HRASLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
Cons ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
HRASLS   10000 perm   1 sec   (6871 perm/sec)   p_kst 1.919000e-01   p_cons 2.860000e-01   p_joint 3.204000e-01

Outputting figure to mutsig2_images.part000000000081/HRASLS.2_519_10000_0.1919_0.286_0.3204.png
                gene_name: HRASLS
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 81 percent done.
HS3ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
Cons ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
KS ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
HS3ST1   10000 perm   1 sec   (6854 perm/sec)   p_kst 3.168000e-01   p_cons 5.561000e-01   p_joint 8.450000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST1.2_928_10000_0.3168_0.5561_0.845.png
                gene_name: HS3ST1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 83 percent done.
HS3ST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
Cons ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
KS ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
HS3ST2   10000 perm   2 sec   (6559 perm/sec)   p_kst 4.927000e-01   p_cons 1.342000e-01   p_joint 6.707000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST2.2_1112_10000_0.4927_0.1342_0.6707.png
                gene_name: HS3ST2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
HS3ST6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 4.428769e-02	ci left: 4.294418e-01	ci right 4.489936e-01	k: 4392	n:10000
HS3ST6   10000 perm   1 sec   (7476 perm/sec)   p_kst 4.392000e-01   p_cons 8.400000e-01   p_joint 6.169000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST6.2_944_10000_0.4392_0.84_0.6169.png
                gene_name: HS3ST6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 88 percent done.
HSD17B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
HSD17B6   10000 perm   1 sec   (7264 perm/sec)   p_kst 2.900000e-03   p_cons 2.202000e-01   p_joint 9.300000e-03

Joint ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
Cons ci ratio: 5.171739e-02	ci left: 2.173457e-01	ci right 2.289349e-01	k: 4462	n:20000
KS ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
HSD17B6   20000 perm   3 sec   (6607 perm/sec)   p_kst 2.750000e-03   p_cons 2.231000e-01   p_joint 9.350000e-03

Joint ci ratio: 1.956798e-01	ci left: 1.190744e-02	ci right 1.452143e-02	k: 395	n:30000
Cons ci ratio: 4.335652e-02	ci left: 2.094695e-01	ci right 2.187860e-01	k: 6423	n:30000
KS ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
HSD17B6   30000 perm   5 sec   (6316 perm/sec)   p_kst 2.833333e-03   p_cons 2.141000e-01   p_joint 1.316667e-02

Joint ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
Cons ci ratio: 3.736021e-02	ci left: 2.117768e-01	ci right 2.198645e-01	k: 8632	n:40000
KS ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
HSD17B6   40000 perm   7 sec   (6123 perm/sec)   p_kst 3.000000e-03   p_cons 2.158000e-01   p_joint 4.500000e-03

Joint ci ratio: 2.619140e-01	ci left: 3.876169e-03	ci right 5.062495e-03	k: 222	n:50000
Cons ci ratio: 3.356929e-02	ci left: 2.106702e-01	ci right 2.178830e-01	k: 10713	n:50000
KS ci ratio: 3.174672e-01	ci left: 2.558091e-03	ci right 3.541012e-03	k: 151	n:50000
HSD17B6   50000 perm   8 sec   (5965 perm/sec)   p_kst 3.020000e-03   p_cons 2.142600e-01   p_joint 4.440000e-03

Joint ci ratio: 1.532767e-01	ci left: 9.956287e-03	ci right 1.162487e-02	k: 646	n:60000
Cons ci ratio: 3.067756e-02	ci left: 2.106245e-01	ci right 2.172032e-01	k: 12834	n:60000
KS ci ratio: 2.975996e-01	ci left: 2.454739e-03	ci right 3.327781e-03	k: 172	n:60000
HSD17B6   60000 perm   10 sec   (5828 perm/sec)   p_kst 2.866667e-03   p_cons 2.139000e-01   p_joint 1.076667e-02

Joint ci ratio: 1.421768e-01	ci left: 9.978581e-03	ci right 1.151952e-02	k: 751	n:70000
Cons ci ratio: 2.837560e-02	ci left: 2.111797e-01	ci right 2.172726e-01	k: 14995	n:70000
KS ci ratio: 2.767876e-01	ci left: 2.462028e-03	ci right 3.265775e-03	k: 199	n:70000
HSD17B6   70000 perm   12 sec   (5703 perm/sec)   p_kst 2.842857e-03   p_cons 2.142143e-01   p_joint 1.072857e-02

Joint ci ratio: 1.327159e-01	ci left: 1.007112e-02	ci right 1.151469e-02	k: 862	n:80000
Cons ci ratio: 2.652748e-02	ci left: 2.115727e-01	ci right 2.172731e-01	k: 17153	n:80000
KS ci ratio: 2.627262e-01	ci left: 2.410678e-03	ci right 3.151113e-03	k: 221	n:80000
HSD17B6   80000 perm   14 sec   (5584 perm/sec)   p_kst 2.762500e-03   p_cons 2.144125e-01   p_joint 1.077500e-02

Joint ci ratio: 2.506105e-01	ci left: 2.371545e-03	ci right 3.061129e-03	k: 243	n:90000
Cons ci ratio: 2.499325e-02	ci left: 2.119657e-01	ci right 2.173416e-01	k: 19318	n:90000
KS ci ratio: 2.506105e-01	ci left: 2.371545e-03	ci right 3.061129e-03	k: 243	n:90000
HSD17B6   90000 perm   16 sec   (5473 perm/sec)   p_kst 2.700000e-03   p_cons 2.146444e-01   p_joint 2.700000e-03

Joint ci ratio: 2.413983e-01	ci left: 2.312672e-03	ci right 2.956717e-03	k: 262	n:100000
Cons ci ratio: 2.372233e-02	ci left: 2.119393e-01	ci right 2.170373e-01	k: 21448	n:100000
KS ci ratio: 2.413983e-01	ci left: 2.312672e-03	ci right 2.956717e-03	k: 262	n:100000
HSD17B6   100000 perm   19 sec   (5372 perm/sec)   p_kst 2.620000e-03   p_cons 2.144800e-01   p_joint 2.620000e-03

Joint ci ratio: 2.271532e-01	ci left: 2.393404e-03	ci right 3.015095e-03	k: 296	n:110000
Cons ci ratio: 2.263112e-02	ci left: 2.118691e-01	ci right 2.167278e-01	k: 23572	n:110000
KS ci ratio: 2.271532e-01	ci left: 2.393404e-03	ci right 3.015095e-03	k: 296	n:110000
HSD17B6   110000 perm   21 sec   (5270 perm/sec)   p_kst 2.690909e-03   p_cons 2.142909e-01   p_joint 2.690909e-03

Joint ci ratio: 1.376971e-01	ci left: 6.246219e-03	ci right 7.177860e-03	k: 804	n:120000
Cons ci ratio: 2.170095e-02	ci left: 2.114582e-01	ci right 2.161056e-01	k: 25653	n:120000
KS ci ratio: 2.145155e-01	ci left: 2.477383e-03	ci right 3.080378e-03	k: 332	n:120000
HSD17B6   120000 perm   23 sec   (5171 perm/sec)   p_kst 2.766667e-03   p_cons 2.137750e-01   p_joint 6.700000e-03

Joint ci ratio: 2.071825e-01	ci left: 2.461682e-03	ci right 3.037777e-03	k: 356	n:130000
Cons ci ratio: 2.080288e-02	ci left: 2.123019e-01	ci right 2.167724e-01	k: 27889	n:130000
KS ci ratio: 2.071825e-01	ci left: 2.461682e-03	ci right 3.037777e-03	k: 356	n:130000
HSD17B6   130000 perm   26 sec   (5078 perm/sec)   p_kst 2.738462e-03   p_cons 2.145308e-01   p_joint 2.738462e-03

Joint ci ratio: 1.957191e-01	ci left: 2.577524e-03	ci right 3.143378e-03	k: 399	n:140000
Cons ci ratio: 2.007569e-02	ci left: 2.118896e-01	ci right 2.161937e-01	k: 29965	n:140000
KS ci ratio: 1.957191e-01	ci left: 2.577524e-03	ci right 3.143378e-03	k: 399	n:140000
HSD17B6   140000 perm   28 sec   (4989 perm/sec)   p_kst 2.850000e-03   p_cons 2.140357e-01   p_joint 2.850000e-03

Joint ci ratio: 1.885477e-01	ci left: 2.602420e-03	ci right 3.150410e-03	k: 430	n:150000
Cons ci ratio: 1.939013e-02	ci left: 2.120463e-01	ci right 2.162048e-01	k: 32118	n:150000
KS ci ratio: 1.885477e-01	ci left: 2.602420e-03	ci right 3.150410e-03	k: 430	n:150000
HSD17B6   150000 perm   31 sec   (4888 perm/sec)   p_kst 2.866667e-03   p_cons 2.141200e-01   p_joint 2.866667e-03

Joint ci ratio: 1.823088e-01	ci left: 2.618569e-03	ci right 3.149699e-03	k: 460	n:160000
Cons ci ratio: 1.878497e-02	ci left: 2.119240e-01	ci right 2.159489e-01	k: 34229	n:160000
KS ci ratio: 1.823088e-01	ci left: 2.618569e-03	ci right 3.149699e-03	k: 460	n:160000
HSD17B6   160000 perm   33 sec   (4806 perm/sec)   p_kst 2.875000e-03   p_cons 2.139312e-01   p_joint 2.875000e-03

Joint ci ratio: 1.762912e-01	ci left: 2.644327e-03	ci right 3.161092e-03	k: 492	n:170000
Cons ci ratio: 1.823060e-02	ci left: 2.118648e-01	ci right 2.157685e-01	k: 36348	n:170000
KS ci ratio: 1.762912e-01	ci left: 2.644327e-03	ci right 3.161092e-03	k: 492	n:170000
HSD17B6   170000 perm   36 sec   (4719 perm/sec)   p_kst 2.894118e-03   p_cons 2.138118e-01   p_joint 2.894118e-03

Joint ci ratio: 1.698619e-01	ci left: 2.699395e-03	ci right 3.205713e-03	k: 530	n:180000
Cons ci ratio: 1.771496e-02	ci left: 2.119577e-01	ci right 2.157515e-01	k: 38493	n:180000
KS ci ratio: 1.698619e-01	ci left: 2.699395e-03	ci right 3.205713e-03	k: 530	n:180000
HSD17B6   180000 perm   39 sec   (4640 perm/sec)   p_kst 2.944444e-03   p_cons 2.138500e-01   p_joint 2.944444e-03

Joint ci ratio: 1.663014e-01	ci left: 2.673279e-03	ci right 3.163135e-03	k: 553	n:190000
Cons ci ratio: 1.723912e-02	ci left: 2.120737e-01	ci right 2.157666e-01	k: 40644	n:190000
KS ci ratio: 1.663014e-01	ci left: 2.673279e-03	ci right 3.163135e-03	k: 553	n:190000
HSD17B6   190000 perm   42 sec   (4566 perm/sec)   p_kst 2.910526e-03   p_cons 2.139158e-01   p_joint 2.910526e-03

Joint ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
Cons ci ratio: 1.680367e-02	ci left: 2.120996e-01	ci right 2.156987e-01	k: 42779	n:200000
KS ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
HSD17B6   200000 perm   45 sec   (4493 perm/sec)   p_kst 2.865000e-03   p_cons 2.138950e-01   p_joint 2.865000e-03

Joint ci ratio: 1.603411e-01	ci left: 2.610502e-03	ci right 3.070059e-03	k: 595	n:210000
Cons ci ratio: 1.638710e-02	ci left: 2.123804e-01	ci right 2.158942e-01	k: 44968	n:210000
KS ci ratio: 1.603411e-01	ci left: 2.610502e-03	ci right 3.070059e-03	k: 595	n:210000
HSD17B6   210000 perm   47 sec   (4424 perm/sec)   p_kst 2.833333e-03   p_cons 2.141333e-01   p_joint 2.833333e-03

Joint ci ratio: 1.565768e-01	ci left: 2.618435e-03	ci right 3.067550e-03	k: 624	n:220000
Cons ci ratio: 1.600545e-02	ci left: 2.125234e-01	ci right 2.159569e-01	k: 47132	n:220000
KS ci ratio: 1.565768e-01	ci left: 2.618435e-03	ci right 3.067550e-03	k: 624	n:220000
HSD17B6   220000 perm   51 sec   (4356 perm/sec)   p_kst 2.836364e-03   p_cons 2.142364e-01   p_joint 2.836364e-03

Joint ci ratio: 1.538939e-01	ci left: 2.596524e-03	ci right 3.033547e-03	k: 646	n:230000
Cons ci ratio: 1.566262e-02	ci left: 2.123687e-01	ci right 2.157255e-01	k: 49230	n:230000
KS ci ratio: 1.538939e-01	ci left: 2.596524e-03	ci right 3.033547e-03	k: 646	n:230000
HSD17B6   230000 perm   54 sec   (4290 perm/sec)   p_kst 2.808696e-03   p_cons 2.140435e-01   p_joint 2.808696e-03

Joint ci ratio: 1.513443e-01	ci left: 2.576499e-03	ci right 3.002316e-03	k: 668	n:240000
Cons ci ratio: 1.533085e-02	ci left: 2.124478e-01	ci right 2.157341e-01	k: 51381	n:240000
KS ci ratio: 1.513443e-01	ci left: 2.576499e-03	ci right 3.002316e-03	k: 668	n:240000
HSD17B6   240000 perm   57 sec   (4228 perm/sec)   p_kst 2.783333e-03   p_cons 2.140875e-01   p_joint 2.783333e-03

Joint ci ratio: 1.482732e-01	ci left: 2.581242e-03	ci right 2.998418e-03	k: 696	n:250000
Cons ci ratio: 1.502269e-02	ci left: 2.124455e-01	ci right 2.156651e-01	k: 53513	n:250000
KS ci ratio: 1.482732e-01	ci left: 2.581242e-03	ci right 2.998418e-03	k: 696	n:250000
HSD17B6   250000 perm   60 sec   (4168 perm/sec)   p_kst 2.784000e-03   p_cons 2.140520e-01   p_joint 2.784000e-03

Joint ci ratio: 1.446830e-01	ci left: 2.611648e-03	ci right 3.022636e-03	k: 731	n:260000
Cons ci ratio: 1.473038e-02	ci left: 2.124900e-01	ci right 2.156471e-01	k: 55657	n:260000
KS ci ratio: 1.446830e-01	ci left: 2.611648e-03	ci right 3.022636e-03	k: 731	n:260000
HSD17B6   260000 perm   63 sec   (4107 perm/sec)   p_kst 2.811538e-03   p_cons 2.140654e-01   p_joint 2.811538e-03

Joint ci ratio: 1.414340e-01	ci left: 2.636342e-03	ci right 3.041114e-03	k: 765	n:270000
Cons ci ratio: 1.446007e-02	ci left: 2.124025e-01	ci right 2.154999e-01	k: 57766	n:270000
KS ci ratio: 1.414340e-01	ci left: 2.636342e-03	ci right 3.041114e-03	k: 765	n:270000
HSD17B6   270000 perm   67 sec   (4050 perm/sec)   p_kst 2.833333e-03   p_cons 2.139481e-01   p_joint 2.833333e-03

Joint ci ratio: 1.391819e-01	ci left: 2.628337e-03	ci right 3.024922e-03	k: 790	n:280000
Cons ci ratio: 1.420094e-02	ci left: 2.123966e-01	ci right 2.154379e-01	k: 59896	n:280000
KS ci ratio: 1.391819e-01	ci left: 2.628337e-03	ci right 3.024922e-03	k: 790	n:280000
HSD17B6   280000 perm   70 sec   (3994 perm/sec)   p_kst 2.821429e-03   p_cons 2.139143e-01   p_joint 2.821429e-03

Joint ci ratio: 1.367821e-01	ci left: 2.630924e-03	ci right 3.020496e-03	k: 818	n:290000
Cons ci ratio: 1.396171e-02	ci left: 2.122367e-01	ci right 2.152242e-01	k: 61981	n:290000
KS ci ratio: 1.367821e-01	ci left: 2.630924e-03	ci right 3.020496e-03	k: 818	n:290000
HSD17B6   290000 perm   74 sec   (3940 perm/sec)   p_kst 2.820690e-03   p_cons 2.137276e-01   p_joint 2.820690e-03

Joint ci ratio: 1.228941e-01	ci left: 3.172224e-03	ci right 3.590793e-03	k: 1013	n:300000
Cons ci ratio: 1.372681e-02	ci left: 2.122675e-01	ci right 2.152047e-01	k: 64120	n:300000
KS ci ratio: 1.341849e-01	ci left: 2.646279e-03	ci right 3.030091e-03	k: 850	n:300000
HSD17B6   300000 perm   77 sec   (3883 perm/sec)   p_kst 2.833333e-03   p_cons 2.137333e-01   p_joint 3.376667e-03

Joint ci ratio: 1.205958e-01	ci left: 3.191872e-03	ci right 3.604595e-03	k: 1052	n:310000
Cons ci ratio: 1.350818e-02	ci left: 2.121776e-01	ci right 2.150664e-01	k: 66222	n:310000
KS ci ratio: 1.319553e-01	ci left: 2.651350e-03	ci right 3.029007e-03	k: 879	n:310000
HSD17B6   310000 perm   81 sec   (3833 perm/sec)   p_kst 2.835484e-03   p_cons 2.136194e-01   p_joint 3.393548e-03

Joint ci ratio: 1.301928e-01	ci left: 2.641035e-03	ci right 3.011810e-03	k: 903	n:320000
Cons ci ratio: 1.329930e-02	ci left: 2.121031e-01	ci right 2.149459e-01	k: 68327	n:320000
KS ci ratio: 1.301928e-01	ci left: 2.641035e-03	ci right 3.011810e-03	k: 903	n:320000
HSD17B6   320000 perm   85 sec   (3784 perm/sec)   p_kst 2.821875e-03   p_cons 2.135219e-01   p_joint 2.821875e-03

Joint ci ratio: 1.168287e-01	ci left: 3.201309e-03	ci right 3.601429e-03	k: 1121	n:330000
Cons ci ratio: 1.309486e-02	ci left: 2.121603e-01	ci right 2.149598e-01	k: 70474	n:330000
KS ci ratio: 1.278787e-01	ci left: 2.657777e-03	ci right 3.023767e-03	k: 936	n:330000
HSD17B6   330000 perm   88 sec   (3735 perm/sec)   p_kst 2.836364e-03   p_cons 2.135576e-01   p_joint 3.396970e-03

Joint ci ratio: 1.258139e-01	ci left: 2.667891e-03	ci right 3.028900e-03	k: 967	n:340000
Cons ci ratio: 1.289448e-02	ci left: 2.123466e-01	ci right 2.151054e-01	k: 72666	n:340000
KS ci ratio: 1.258139e-01	ci left: 2.667891e-03	ci right 3.028900e-03	k: 967	n:340000
HSD17B6   340000 perm   93 sec   (3665 perm/sec)   p_kst 2.844118e-03   p_cons 2.137235e-01   p_joint 2.844118e-03

Joint ci ratio: 1.242834e-01	ci left: 2.658092e-03	ci right 3.013076e-03	k: 991	n:350000
Cons ci ratio: 1.270314e-02	ci left: 2.125196e-01	ci right 2.152394e-01	k: 74857	n:350000
KS ci ratio: 1.242834e-01	ci left: 2.658092e-03	ci right 3.013076e-03	k: 991	n:350000
HSD17B6   350000 perm   97 sec   (3610 perm/sec)   p_kst 2.831429e-03   p_cons 2.138771e-01   p_joint 2.831429e-03

Joint ci ratio: 1.223854e-01	ci left: 2.667711e-03	ci right 3.018145e-03	k: 1022	n:360000
Cons ci ratio: 1.252772e-02	ci left: 2.124783e-01	ci right 2.151597e-01	k: 76974	n:360000
KS ci ratio: 1.223854e-01	ci left: 2.667711e-03	ci right 3.018145e-03	k: 1022	n:360000
HSD17B6   360000 perm   101 sec   (3565 perm/sec)   p_kst 2.838889e-03   p_cons 2.138167e-01   p_joint 2.838889e-03

Joint ci ratio: 1.202291e-01	ci left: 2.692578e-03	ci right 3.039604e-03	k: 1059	n:370000
Cons ci ratio: 1.234716e-02	ci left: 2.127711e-01	ci right 2.154172e-01	k: 79214	n:370000
KS ci ratio: 1.202291e-01	ci left: 2.692578e-03	ci right 3.039604e-03	k: 1059	n:370000
HSD17B6   370000 perm   105 sec   (3509 perm/sec)   p_kst 2.862162e-03   p_cons 2.140919e-01   p_joint 2.862162e-03

Joint ci ratio: 1.083261e-01	ci left: 3.248125e-03	ci right 3.622668e-03	k: 1304	n:380000
Cons ci ratio: 1.217857e-02	ci left: 2.129279e-01	ci right 2.155396e-01	k: 81408	n:380000
KS ci ratio: 1.180749e-01	ci left: 2.721296e-03	ci right 3.065301e-03	k: 1098	n:380000
HSD17B6   380000 perm   110 sec   (3454 perm/sec)   p_kst 2.889474e-03   p_cons 2.142316e-01   p_joint 3.431579e-03

Joint ci ratio: 1.169639e-01	ci left: 2.703781e-03	ci right 3.042134e-03	k: 1119	n:390000
Cons ci ratio: 1.202035e-02	ci left: 2.129746e-01	ci right 2.155527e-01	k: 83562	n:390000
KS ci ratio: 1.169639e-01	ci left: 2.703781e-03	ci right 3.042134e-03	k: 1119	n:390000
HSD17B6   390000 perm   115 sec   (3402 perm/sec)   p_kst 2.869231e-03   p_cons 2.142615e-01   p_joint 2.869231e-03

Joint ci ratio: 1.152774e-01	ci left: 2.716291e-03	ci right 3.050974e-03	k: 1152	n:400000
Cons ci ratio: 1.187343e-02	ci left: 2.128695e-01	ci right 2.154146e-01	k: 85656	n:400000
KS ci ratio: 1.152774e-01	ci left: 2.716291e-03	ci right 3.050974e-03	k: 1152	n:400000
HSD17B6   400000 perm   119 sec   (3358 perm/sec)   p_kst 2.880000e-03   p_cons 2.141400e-01   p_joint 2.880000e-03

Joint ci ratio: 1.045124e-01	ci left: 3.240747e-03	ci right 3.600474e-03	k: 1401	n:410000
Cons ci ratio: 1.172999e-02	ci left: 2.128209e-01	ci right 2.153344e-01	k: 87771	n:410000
KS ci ratio: 1.140481e-01	ci left: 2.709267e-03	ci right 3.039285e-03	k: 1177	n:410000
HSD17B6   410000 perm   124 sec   (3320 perm/sec)   p_kst 2.870732e-03   p_cons 2.140756e-01   p_joint 3.417073e-03

Joint ci ratio: 1.030519e-01	ci left: 3.256354e-03	ci right 3.612456e-03	k: 1441	n:420000
Cons ci ratio: 1.159137e-02	ci left: 2.127818e-01	ci right 2.152650e-01	k: 89889	n:420000
KS ci ratio: 1.124363e-01	ci left: 2.723421e-03	ci right 3.050164e-03	k: 1211	n:420000
HSD17B6   420000 perm   128 sec   (3283 perm/sec)   p_kst 2.883333e-03   p_cons 2.140214e-01   p_joint 3.430952e-03

Joint ci ratio: 7.874397e-02	ci left: 5.504519e-03	ci right 5.957995e-03	k: 2463	n:430000
Cons ci ratio: 1.145281e-02	ci left: 2.128840e-01	ci right 2.153385e-01	k: 92067	n:430000
KS ci ratio: 1.109804e-01	ci left: 2.732425e-03	ci right 3.055726e-03	k: 1243	n:430000
HSD17B6   430000 perm   132 sec   (3245 perm/sec)   p_kst 2.890698e-03   p_cons 2.141093e-01   p_joint 5.727907e-03

Joint ci ratio: 7.791090e-02	ci left: 5.497510e-03	ci right 5.945400e-03	k: 2516	n:440000
Cons ci ratio: 1.131757e-02	ci left: 2.130271e-01	ci right 2.154540e-01	k: 94265	n:440000
KS ci ratio: 1.098823e-01	ci left: 2.725573e-03	ci right 3.044665e-03	k: 1268	n:440000
HSD17B6   440000 perm   137 sec   (3211 perm/sec)   p_kst 2.881818e-03   p_cons 2.142386e-01   p_joint 5.718182e-03

Joint ci ratio: 9.920388e-02	ci left: 3.286194e-03	ci right 3.631360e-03	k: 1555	n:450000
Cons ci ratio: 1.118878e-02	ci left: 2.131107e-01	ci right 2.155108e-01	k: 96439	n:450000
KS ci ratio: 1.085221e-01	ci left: 2.734174e-03	ci right 3.050058e-03	k: 1300	n:450000
HSD17B6   450000 perm   142 sec   (3166 perm/sec)   p_kst 2.888889e-03   p_cons 2.143089e-01   p_joint 3.455556e-03

Joint ci ratio: 9.823057e-02	ci left: 3.280482e-03	ci right 3.621472e-03	k: 1586	n:460000
Cons ci ratio: 1.106478e-02	ci left: 2.131757e-01	ci right 2.155497e-01	k: 98606	n:460000
KS ci ratio: 1.074135e-01	ci left: 2.731846e-03	ci right 3.044033e-03	k: 1327	n:460000
HSD17B6   460000 perm   147 sec   (3129 perm/sec)   p_kst 2.884783e-03   p_cons 2.143609e-01   p_joint 3.447826e-03

Joint ci ratio: 9.743655e-02	ci left: 3.264648e-03	ci right 3.601093e-03	k: 1612	n:470000
Cons ci ratio: 1.094870e-02	ci left: 2.131191e-01	ci right 2.154674e-01	k: 100717	n:470000
KS ci ratio: 1.064169e-01	ci left: 2.725490e-03	ci right 3.033880e-03	k: 1352	n:470000
HSD17B6   470000 perm   152 sec   (3097 perm/sec)   p_kst 2.876596e-03   p_cons 2.142915e-01   p_joint 3.429787e-03

Joint ci ratio: 9.633762e-02	ci left: 3.271851e-03	ci right 3.605021e-03	k: 1649	n:480000
Cons ci ratio: 1.083639e-02	ci left: 2.130588e-01	ci right 2.153822e-01	k: 102825	n:480000
KS ci ratio: 1.051800e-01	ci left: 2.733612e-03	ci right 3.039104e-03	k: 1384	n:480000
HSD17B6   480000 perm   157 sec   (3067 perm/sec)   p_kst 2.883333e-03   p_cons 2.142188e-01   p_joint 3.435417e-03

Joint ci ratio: 9.533177e-02	ci left: 3.274795e-03	ci right 3.604588e-03	k: 1684	n:490000
Cons ci ratio: 1.072975e-02	ci left: 2.129297e-01	ci right 2.152287e-01	k: 104898	n:490000
KS ci ratio: 1.042438e-01	ci left: 2.727508e-03	ci right 3.029438e-03	k: 1409	n:490000
HSD17B6   490000 perm   161 sec   (3036 perm/sec)   p_kst 2.875510e-03   p_cons 2.140776e-01   p_joint 3.436735e-03

Joint ci ratio: 9.421946e-02	ci left: 3.287404e-03	ci right 3.614391e-03	k: 1724	n:500000
Cons ci ratio: 1.061943e-02	ci left: 2.130196e-01	ci right 2.152957e-01	k: 107078	n:500000
KS ci ratio: 1.030087e-01	ci left: 2.739196e-03	ci right 3.038610e-03	k: 1443	n:500000
HSD17B6   500000 perm   166 sec   (3007 perm/sec)   p_kst 2.886000e-03   p_cons 2.141560e-01   p_joint 3.448000e-03

Joint ci ratio: 7.261043e-02	ci left: 5.475964e-03	ci right 5.890466e-03	k: 2897	n:510000
Cons ci ratio: 1.051601e-02	ci left: 2.129925e-01	ci right 2.152461e-01	k: 109200	n:510000
KS ci ratio: 1.023036e-01	ci left: 2.723694e-03	ci right 3.019253e-03	k: 1463	n:510000
HSD17B6   510000 perm   171 sec   (2978 perm/sec)   p_kst 2.868627e-03   p_cons 2.141176e-01   p_joint 5.680392e-03

Joint ci ratio: 7.210329e-02	ci left: 5.448074e-03	ci right 5.857464e-03	k: 2938	n:520000
Cons ci ratio: 1.041626e-02	ci left: 2.129435e-01	ci right 2.151751e-01	k: 111310	n:520000
KS ci ratio: 1.014757e-01	ci left: 2.716293e-03	ci right 3.008521e-03	k: 1487	n:520000
HSD17B6   520000 perm   176 sec   (2949 perm/sec)   p_kst 2.859615e-03   p_cons 2.140577e-01   p_joint 5.650000e-03

Joint ci ratio: 9.210989e-02	ci left: 3.248749e-03	ci right 3.564266e-03	k: 1804	n:530000
Cons ci ratio: 1.031628e-02	ci left: 2.129944e-01	ci right 2.152050e-01	k: 113472	n:530000
KS ci ratio: 1.007344e-01	ci left: 2.705501e-03	ci right 2.994316e-03	k: 1509	n:530000
HSD17B6   530000 perm   182 sec   (2916 perm/sec)   p_kst 2.847170e-03   p_cons 2.140981e-01   p_joint 3.403774e-03

Joint ci ratio: 9.135419e-02	ci left: 3.242867e-03	ci right 3.555091e-03	k: 1834	n:540000
Cons ci ratio: 1.022099e-02	ci left: 2.129825e-01	ci right 2.151724e-01	k: 115601	n:540000
KS ci ratio: 9.987839e-02	ci left: 2.702339e-03	ci right 2.988221e-03	k: 1535	n:540000
HSD17B6   540000 perm   187 sec   (2887 perm/sec)   p_kst 2.842593e-03   p_cons 2.140759e-01   p_joint 3.396296e-03

Outputting figure to mutsig2_images.part000000000081/HSD17B6.2_970_540000_0.0028426_0.21408_0.0033963.png
                gene_name: HSD17B6
               theta_stop: 0.100 
                    nperm: 540000 
                     p_ks: 0.0028 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0032 
    ci_joint_bounds_right: 0.0036 

Current progress: 90 percent done.
HSD3B7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
Cons ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
KS ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
HSD3B7   10000 perm   1 sec   (6854 perm/sec)   p_kst 3.077000e-01   p_cons 7.700000e-02   p_joint 1.322000e-01

Joint ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
Cons ci ratio: 9.533036e-02	ci left: 7.422213e-02	ci right 8.170111e-02	k: 1558	n:20000
KS ci ratio: 4.180746e-02	ci left: 2.989211e-01	ci right 3.117355e-01	k: 6106	n:20000
HSD3B7   20000 perm   3 sec   (6399 perm/sec)   p_kst 3.053000e-01   p_cons 7.790000e-02   p_joint 1.308500e-01

Outputting figure to mutsig2_images.part000000000081/HSD3B7.2_1134_20000_0.3053_0.0779_0.13085.png
                gene_name: HSD3B7
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 92 percent done.
HSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
KS ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
HSF5   10000 perm   1 sec   (6982 perm/sec)   p_kst 4.954000e-01   p_cons 1.225000e-01   p_joint 1

Joint ci ratio: 2.237718e-02	ci left: 5.985863e-01	ci right 6.121831e-01	k: 12108	n:20000
Cons ci ratio: 7.282011e-02	ci left: 1.219226e-01	ci right 1.311863e-01	k: 2530	n:20000
KS ci ratio: 2.868683e-02	ci left: 4.758525e-01	ci right 4.897525e-01	k: 9656	n:20000
HSF5   20000 perm   3 sec   (6191 perm/sec)   p_kst 4.828000e-01   p_cons 1.265000e-01   p_joint 6.054000e-01

Outputting figure to mutsig2_images.part000000000081/HSF5.2_1815_20000_0.4828_0.1265_0.6054.png
                gene_name: HSF5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 94 percent done.
HSH2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755631e-03	ci left: 9.889489e-01	ci right 9.927569e-01	k: 9910	n:10000
Cons ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
KS ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
HSH2D   10000 perm   1 sec   (7467 perm/sec)   p_kst 8.473000e-01   p_cons 8.333000e-01   p_joint 9.910000e-01

Outputting figure to mutsig2_images.part000000000081/HSH2D.2_1080_10000_0.8473_0.8333_0.991.png
                gene_name: HSH2D
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
HSP90B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
KS ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
HSP90B1   10000 perm   2 sec   (6543 perm/sec)   p_kst 9.029000e-01   p_cons 7.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSP90B1.2_2484_10000_0.9029_0.7827_1.png
                gene_name: HSP90B1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HSPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
Cons ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
KS ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
HSPA6   10000 perm   1 sec   (6994 perm/sec)   p_kst 5.599000e-01   p_cons 4.490000e-02   p_joint 7.720000e-02

Joint ci ratio: 1.187710e-01	ci left: 4.857450e-02	ci right 5.475667e-02	k: 1032	n:20000
Cons ci ratio: 1.265892e-01	ci left: 4.284699e-02	ci right 4.868599e-02	k: 914	n:20000
KS ci ratio: 2.478594e-02	ci left: 5.487309e-01	ci right 5.625530e-01	k: 11113	n:20000
HSPA6   20000 perm   3 sec   (6196 perm/sec)   p_kst 5.556500e-01   p_cons 4.570000e-02   p_joint 5.160000e-02

Joint ci ratio: 6.115231e-02	ci left: 1.167706e-01	ci right 1.241697e-01	k: 3613	n:30000
Cons ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
KS ci ratio: 2.032632e-02	ci left: 5.478529e-01	ci right 5.591367e-01	k: 16605	n:30000
HSPA6   30000 perm   5 sec   (5901 perm/sec)   p_kst 5.535000e-01   p_cons 4.493333e-02   p_joint 1.204333e-01

Joint ci ratio: 6.924480e-02	ci left: 7.160078e-02	ci right 7.676124e-02	k: 2966	n:40000
Cons ci ratio: 9.037033e-02	ci left: 4.289121e-02	ci right 4.697518e-02	k: 1796	n:40000
KS ci ratio: 1.769161e-02	ci left: 5.461346e-01	ci right 5.559080e-01	k: 22041	n:40000
HSPA6   40000 perm   7 sec   (5703 perm/sec)   p_kst 5.510250e-01   p_cons 4.490000e-02   p_joint 7.415000e-02

Outputting figure to mutsig2_images.part000000000081/HSPA6.2_1936_40000_0.55102_0.0449_0.07415.png
                gene_name: HSPA6
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000081
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 81 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422055: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000082> was used as the working directory.
Started at Wed Oct 24 17:54:14 2012
Results reported at Wed Oct 24 19:29:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000082.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000082.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 82  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000082.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5403.47 sec.
    Max Memory :      5386 MB
    Max Swap   :      7734 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
82
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 82
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 82: processing genes 7329 - 7419
Calculating significance of each gene.
Using projection method.
7329	HSPB3	1
7330	HSPB7	2.827319e-01
7331	HSPB8	5.149127e-01
7332	HSPB9	2.632960e-01
7333	HSPBAP1	5.710649e-01
7334	HSPBP1	3.963354e-01
7335	HSPC159	1
7336	HSPD1	8.603634e-01
7337	HSPE1	4.817751e-01
7338	HSPG2	9.981371e-01
7339	HSPH1	8.238221e-01
7340	HTATIP2	1
7341	HTATSF1	9.266573e-02
7342	HTN1	1
7343	HTN3	1
7344	HTR1A	5.713210e-02
7345	HTR1B	4.965990e-02
7346	HTR1D	8.499596e-01
7347	HTR1E	6.848420e-03
7348	HTR1F	1
7349	HTR2A	1
7350	HTR2B	4.896989e-01
7351	HTR2C	1
7352	HTR3A	1
7353	HTR3B	8.496493e-01
7354	HTR3C	6.448575e-01
7355	HTR3D	5.121086e-01
7356	HTR3E	1
7357	HTR4	1
7358	HTR5A	2.683728e-02
7359	HTR6	1.862603e-01
7360	HTR7	4.786506e-01
7361	HTRA1	6.911783e-01
7362	HTRA2	8.839346e-01
7363	HTRA3	1
7364	HTRA4	2.053132e-01
7365	HTT	1
7366	HUNK	8.394884e-01
7367	HUS1	3.357131e-01
7368	HUS1B	1
7369	HUWE1	9.991111e-01
7370	HVCN1	7.676529e-01
7371	HYAL1	9.667460e-01
7372	HYAL2	9.580068e-01
7373	HYAL3	5.675297e-01
7374	HYAL4	1.536207e-03
7375	HYDIN	9.864284e-01
7376	HYI	1
7377	HYLS1	1
7378	HYOU1	9.957416e-01
7379	IAH1	8.062087e-01
7380	IAPP	5.871263e-02
7381	IARS	9.566877e-01
7382	IARS2	2.849645e-01
7383	IBSP	4.443622e-01
7384	IBTK	9.960125e-01
7385	ICA1	9.336168e-01
7386	ICA1L	1
7387	ICAM1	1
7388	ICAM2	5.169365e-01
7389	ICAM3	1
7390	ICAM4	1
7391	ICAM5	8.944702e-01
7392	ICK	7.391795e-01
7393	ICMT	1
7394	ICOS	2.800240e-01
7395	ICOSLG	6.396580e-01
7396	ICT1	1
7397	ID1	1
7398	ID2	1
7399	ID3	5.240095e-01
7400	IDE	8.627739e-01
7401	IDH1	6.211051e-01
7402	IDH2	6.982843e-01
7403	IDH3A	8.909027e-01
7404	IDH3B	6.308058e-01
7405	IDH3G	7.735670e-01
7406	IDI1	4.255619e-01
7407	IDI2	1
7408	IDO1	1
7409	IDO2	5.640599e-01
7410	IDS	4.898445e-01
7411	IDUA	4.137156e-01
7412	IER2	1
7413	IER3	1
7414	IER3IP1	1
7415	IER5	7.056491e-01
7416	IER5L	1
7417	IFFO1	1
7418	IFI16	2.460746e-02
7419	IFI27	1
Done

Running MutSig 2:
Scatter job 82: processing genes 7329 - 7419
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HYDIN
Processing conservation and coverage...
63% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
HYDIN   10000 perm   4 sec   (2826 perm/sec)   p_kst 5.670000e-01   p_cons 1.109000e-01   p_joint 2.609000e-01

Joint ci ratio: 5.397284e-02	ci left: 2.030361e-01	ci right 2.143487e-01	k: 4173	n:20000
Cons ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
KS ci ratio: 2.446136e-02	ci left: 5.552406e-01	ci right 5.690413e-01	k: 11243	n:20000
HYDIN   20000 perm   9 sec   (2126 perm/sec)   p_kst 5.621500e-01   p_cons 1.126000e-01   p_joint 2.086500e-01

Outputting figure to mutsig2_images.part000000000082/HYDIN.35_15715_20000_0.56215_0.1126_0.20865.png
                gene_name: HYDIN
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
HUWE1
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
Cons ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
HUWE1   10000 perm   3 sec   (3369 perm/sec)   p_kst 8.385000e-01   p_cons 3.035000e-01   p_joint 8.041000e-01

Outputting figure to mutsig2_images.part000000000082/HUWE1.18_13449_10000_0.8385_0.3035_0.8041.png
                gene_name: HUWE1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 4 percent done.
HSPG2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
Cons ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
KS ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
HSPG2   10000 perm   3 sec   (3282 perm/sec)   p_kst 9.365000e-01   p_cons 1.234000e-01   p_joint 5.147000e-01

Joint ci ratio: 3.518915e-02	ci left: 3.761058e-01	ci right 3.896283e-01	k: 7657	n:20000
Cons ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
KS ci ratio: 7.331473e-03	ci left: 9.311362e-01	ci right 9.380368e-01	k: 18693	n:20000
HSPG2   20000 perm   7 sec   (3064 perm/sec)   p_kst 9.346500e-01   p_cons 1.198500e-01   p_joint 3.828500e-01

Outputting figure to mutsig2_images.part000000000082/HSPG2.17_13564_20000_0.93465_0.11985_0.38285.png
                gene_name: HSPG2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
HTR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
HTR1A   10000 perm   2 sec   (6229 perm/sec)   p_kst 3.260000e-02   p_cons 6.090000e-02   p_joint 2.810000e-02

Joint ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
HTR1A   20000 perm   4 sec   (5613 perm/sec)   p_kst 3.530000e-02   p_cons 5.425000e-02   p_joint 1.420000e-02

Joint ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
Cons ci ratio: 9.463309e-02	ci left: 5.153421e-02	ci right 5.668591e-02	k: 1622	n:30000
KS ci ratio: 1.191894e-01	ci left: 3.272222e-02	ci right 3.690183e-02	k: 1043	n:30000
HTR1A   30000 perm   6 sec   (5366 perm/sec)   p_kst 3.476667e-02   p_cons 5.406667e-02   p_joint 2.196667e-02

Joint ci ratio: 1.316779e-01	ci left: 2.024606e-02	ci right 2.312396e-02	k: 866	n:40000
Cons ci ratio: 8.221636e-02	ci left: 5.155987e-02	ci right 5.600519e-02	k: 2150	n:40000
KS ci ratio: 1.026877e-01	ci left: 3.334221e-02	ci right 3.697568e-02	k: 1405	n:40000
HTR1A   40000 perm   8 sec   (5197 perm/sec)   p_kst 3.512500e-02   p_cons 5.375000e-02   p_joint 2.165000e-02

Joint ci ratio: 1.073399e-01	ci left: 2.458376e-02	ci right 2.739164e-02	k: 1298	n:50000
Cons ci ratio: 7.377990e-02	ci left: 5.146494e-02	ci right 5.542711e-02	k: 2671	n:50000
KS ci ratio: 9.095222e-02	ci left: 3.418849e-02	ci right 3.746568e-02	k: 1790	n:50000
HTR1A   50000 perm   10 sec   (5057 perm/sec)   p_kst 3.580000e-02   p_cons 5.342000e-02   p_joint 2.596000e-02

Joint ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
Cons ci ratio: 6.771382e-02	ci left: 5.110592e-02	ci right 5.470415e-02	k: 3173	n:60000
KS ci ratio: 8.325301e-02	ci left: 3.414789e-02	ci right 3.713058e-02	k: 2137	n:60000
HTR1A   60000 perm   12 sec   (4932 perm/sec)   p_kst 3.561667e-02   p_cons 5.288333e-02   p_joint 2.108333e-02

Joint ci ratio: 1.119487e-01	ci left: 1.624975e-02	ci right 1.819056e-02	k: 1204	n:70000
Cons ci ratio: 6.261949e-02	ci left: 5.135178e-02	ci right 5.468540e-02	k: 3710	n:70000
KS ci ratio: 7.671667e-02	ci left: 3.457600e-02	ci right 3.734835e-02	k: 2516	n:70000
HTR1A   70000 perm   15 sec   (4822 perm/sec)   p_kst 3.594286e-02   p_cons 5.300000e-02   p_joint 1.720000e-02

Joint ci ratio: 1.142070e-01	ci left: 1.368304e-02	ci right 1.535244e-02	k: 1160	n:80000
Cons ci ratio: 5.827219e-02	ci left: 5.197528e-02	ci right 5.510720e-02	k: 4282	n:80000
KS ci ratio: 7.202952e-02	ci left: 3.441262e-02	ci right 3.699620e-02	k: 2855	n:80000
HTR1A   80000 perm   17 sec   (4719 perm/sec)   p_kst 3.568750e-02   p_cons 5.352500e-02   p_joint 1.450000e-02

Joint ci ratio: 1.173055e-01	ci left: 1.153615e-02	ci right 1.298443e-02	k: 1102	n:90000
Cons ci ratio: 5.499009e-02	ci left: 5.197290e-02	ci right 5.492264e-02	k: 4809	n:90000
KS ci ratio: 6.791013e-02	ci left: 3.448632e-02	ci right 3.692150e-02	k: 3212	n:90000
HTR1A   90000 perm   19 sec   (4624 perm/sec)   p_kst 3.568889e-02   p_cons 5.343333e-02   p_joint 1.224444e-02

Joint ci ratio: 1.025180e-01	ci left: 1.367073e-02	ci right 1.515763e-02	k: 1440	n:100000
Cons ci ratio: 5.222214e-02	ci left: 5.194535e-02	ci right 5.474063e-02	k: 5333	n:100000
KS ci ratio: 6.664465e-02	ci left: 3.232443e-02	ci right 3.456274e-02	k: 3343	n:100000
HTR1A   100000 perm   22 sec   (4539 perm/sec)   p_kst 3.343000e-02   p_cons 5.333000e-02   p_joint 1.440000e-02

Joint ci ratio: 9.857380e-02	ci left: 1.347362e-02	ci right 1.487944e-02	k: 1558	n:110000
Cons ci ratio: 4.981161e-02	ci left: 5.197080e-02	ci right 5.463463e-02	k: 5862	n:110000
KS ci ratio: 6.313066e-02	ci left: 3.279354e-02	ci right 3.494022e-02	k: 3724	n:110000
HTR1A   110000 perm   25 sec   (4459 perm/sec)   p_kst 3.385455e-02   p_cons 5.329091e-02   p_joint 1.416364e-02

Outputting figure to mutsig2_images.part000000000082/HTR1A.13_1272_110000_0.033855_0.053291_0.014164.png
                gene_name: HTR1A
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 7 percent done.
HTATSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
Cons ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
HTATSF1   10000 perm   2 sec   (5890 perm/sec)   p_kst 3.211000e-01   p_cons 4.044000e-01   p_joint 4.544000e-01

Outputting figure to mutsig2_images.part000000000082/HTATSF1.11_2304_10000_0.3211_0.4044_0.4544.png
                gene_name: HTATSF1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
HTR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
Cons ci ratio: 4.047690e-02	ci left: 4.740612e-01	ci right 4.937482e-01	k: 4839	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
HTR5A   10000 perm   2 sec   (6149 perm/sec)   p_kst 5.221000e-01   p_cons 4.839000e-01   p_joint 7.467000e-01

Outputting figure to mutsig2_images.part000000000082/HTR5A.11_1082_10000_0.5221_0.4839_0.7467.png
                gene_name: HTR5A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 11 percent done.
HTR1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 1.668823e-02	ci left: 8.393860e-01	ci right 8.536115e-01	k: 8466	n:10000
HTR1E   10000 perm   2 sec   (5991 perm/sec)   p_kst 8.466000e-01   p_cons 1.965000e-01   p_joint 4.640000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1E.9_1102_10000_0.8466_0.1965_0.464.png
                gene_name: HTR1E
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 12 percent done.
HYAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
Cons ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
KS ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
HYAL4   10000 perm   2 sec   (6158 perm/sec)   p_kst 7.444000e-01   p_cons 2.528000e-01   p_joint 5.721000e-01

Outputting figure to mutsig2_images.part000000000082/HYAL4.9_1458_10000_0.7444_0.2528_0.5721.png
                gene_name: HYAL4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 14 percent done.
IARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
Cons ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
KS ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
IARS   10000 perm   2 sec   (5363 perm/sec)   p_kst 1.779000e-01   p_cons 3.395000e-01   p_joint 2.600000e-01

Outputting figure to mutsig2_images.part000000000082/IARS.9_3921_10000_0.1779_0.3395_0.26.png
                gene_name: IARS
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 16 percent done.
IFI16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
Cons ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
IFI16   10000 perm   2 sec   (5826 perm/sec)   p_kst 1.168000e-01   p_cons 4.194000e-01   p_joint 1.922000e-01

Joint ci ratio: 5.343936e-02	ci left: 2.063031e-01	ci right 2.176807e-01	k: 4239	n:20000
Cons ci ratio: 3.183265e-02	ci left: 4.243218e-01	ci right 4.380982e-01	k: 8624	n:20000
KS ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
IFI16   20000 perm   4 sec   (5275 perm/sec)   p_kst 1.153000e-01   p_cons 4.312000e-01   p_joint 2.119500e-01

Outputting figure to mutsig2_images.part000000000082/IFI16.9_2230_20000_0.1153_0.4312_0.21195.png
                gene_name: IFI16
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 18 percent done.
HTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
HTT   10000 perm   2 sec   (4175 perm/sec)   p_kst 3.220000e-02   p_cons 6.428000e-01   p_joint 8.110000e-02

Joint ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
Cons ci ratio: 2.059220e-02	ci left: 6.376699e-01	ci right 6.509881e-01	k: 12887	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
HTT   20000 perm   5 sec   (3821 perm/sec)   p_kst 3.330000e-02   p_cons 6.443500e-01   p_joint 1.070000e-01

Joint ci ratio: 8.802879e-02	ci left: 5.926432e-02	ci right 6.475421e-02	k: 1859	n:30000
Cons ci ratio: 1.686815e-02	ci left: 6.374143e-01	ci right 6.482913e-01	k: 19286	n:30000
KS ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
HTT   30000 perm   8 sec   (3693 perm/sec)   p_kst 3.266667e-02   p_cons 6.428667e-01   p_joint 6.196667e-02

Joint ci ratio: 7.730443e-02	ci left: 5.806035e-02	ci right 6.275372e-02	k: 2415	n:40000
Cons ci ratio: 1.460332e-02	ci left: 6.383071e-01	ci right 6.477221e-01	k: 25721	n:40000
KS ci ratio: 1.066845e-01	ci left: 3.090553e-02	ci right 3.441275e-02	k: 1305	n:40000
HTT   40000 perm   11 sec   (3603 perm/sec)   p_kst 3.262500e-02   p_cons 6.430250e-01   p_joint 6.037500e-02

Joint ci ratio: 5.993100e-02	ci left: 7.645292e-02	ci right 8.119612e-02	k: 3940	n:50000
Cons ci ratio: 1.300439e-02	ci left: 6.408275e-01	ci right 6.492357e-01	k: 32252	n:50000
KS ci ratio: 9.460112e-02	ci left: 3.162724e-02	ci right 3.478726e-02	k: 1659	n:50000
HTT   50000 perm   14 sec   (3530 perm/sec)   p_kst 3.318000e-02   p_cons 6.450400e-01   p_joint 7.880000e-02

Outputting figure to mutsig2_images.part000000000082/HTT.8_9697_50000_0.03318_0.64504_0.0788.png
                gene_name: HTT
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 20 percent done.
IARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
Cons ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
KS ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
IARS2   10000 perm   2 sec   (5289 perm/sec)   p_kst 1.807000e-01   p_cons 3.495000e-01   p_joint 2.218000e-01

Outputting figure to mutsig2_images.part000000000082/IARS2.7_3131_10000_0.1807_0.3495_0.2218.png
                gene_name: IARS2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
HSPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HSPH1   10000 perm   2 sec   (6240 perm/sec)   p_kst 1   p_cons 5.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPH1.6_2649_10000_1_0.5629_1.png
                gene_name: HSPH1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
HTR2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
HTR2C   10000 perm   1 sec   (7144 perm/sec)   p_kst 7.039000e-01   p_cons 1.069000e-01   p_joint 2.976000e-01

Joint ci ratio: 4.343426e-02	ci left: 2.830715e-01	ci right 2.956898e-01	k: 5787	n:20000
Cons ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
KS ci ratio: 1.813478e-02	ci left: 6.938467e-01	ci right 7.065950e-01	k: 14005	n:20000
HTR2C   20000 perm   3 sec   (6361 perm/sec)   p_kst 7.002500e-01   p_cons 1.029500e-01   p_joint 2.893500e-01

Outputting figure to mutsig2_images.part000000000082/HTR2C.6_1393_20000_0.70025_0.10295_0.28935.png
                gene_name: HTR2C
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 25 percent done.
IDE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
IDE   10000 perm   2 sec   (5956 perm/sec)   p_kst 7.160000e-01   p_cons 1.610000e-02   p_joint 1.363000e-01

Joint ci ratio: 6.722610e-02	ci left: 1.403936e-01	ci right 1.502098e-01	k: 2905	n:20000
Cons ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
KS ci ratio: 1.796217e-02	ci left: 6.978707e-01	ci right 7.105699e-01	k: 14085	n:20000
IDE   20000 perm   4 sec   (5333 perm/sec)   p_kst 7.042500e-01   p_cons 1.790000e-02   p_joint 1.452500e-01

Joint ci ratio: 5.821340e-02	ci left: 1.274646e-01	ci right 1.351403e-01	k: 3938	n:30000
Cons ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
KS ci ratio: 1.426052e-02	ci left: 7.106588e-01	ci right 7.208994e-01	k: 21474	n:30000
IDE   30000 perm   6 sec   (5092 perm/sec)   p_kst 7.158000e-01   p_cons 1.766667e-02   p_joint 1.312667e-01

Joint ci ratio: 5.410647e-02	ci left: 1.128526e-01	ci right 1.191533e-01	k: 4639	n:40000
Cons ci ratio: 1.464329e-01	ci left: 1.630991e-02	ci right 1.891080e-02	k: 703	n:40000
KS ci ratio: 1.287458e-02	ci left: 6.940513e-01	ci right 7.030699e-01	k: 27943	n:40000
IDE   40000 perm   8 sec   (4935 perm/sec)   p_kst 6.985750e-01   p_cons 1.757500e-02   p_joint 1.159750e-01

Joint ci ratio: 5.050709e-02	ci left: 1.047978e-01	ci right 1.102478e-01	k: 5375	n:50000
Cons ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
KS ci ratio: 1.154098e-02	ci left: 6.935929e-01	ci right 7.016641e-01	k: 34882	n:50000
IDE   50000 perm   10 sec   (4818 perm/sec)   p_kst 6.976400e-01   p_cons 1.780000e-02   p_joint 1.075000e-01

Joint ci ratio: 4.469157e-02	ci left: 1.111043e-01	ci right 1.161998e-01	k: 6818	n:60000
Cons ci ratio: 1.180911e-01	ci left: 1.696740e-02	ci right 1.911291e-02	k: 1081	n:60000
KS ci ratio: 1.052396e-02	ci left: 6.944088e-01	ci right 7.017720e-01	k: 41886	n:60000
IDE   60000 perm   13 sec   (4710 perm/sec)   p_kst 6.981000e-01   p_cons 1.801667e-02   p_joint 1.136333e-01

Joint ci ratio: 4.225793e-02	ci left: 1.071534e-01	ci right 1.117933e-01	k: 7662	n:70000
Cons ci ratio: 1.101036e-01	ci left: 1.680557e-02	ci right 1.877754e-02	k: 1244	n:70000
KS ci ratio: 9.766095e-03	ci left: 6.936950e-01	ci right 7.005172e-01	k: 48798	n:70000
IDE   70000 perm   15 sec   (4618 perm/sec)   p_kst 6.971143e-01   p_cons 1.777143e-02   p_joint 1.094571e-01

Joint ci ratio: 4.421816e-02	ci left: 8.746866e-02	ci right 9.143617e-02	k: 7155	n:80000
Cons ci ratio: 1.026938e-01	ci left: 1.696812e-02	ci right 1.881708e-02	k: 1430	n:80000
KS ci ratio: 9.151620e-03	ci left: 6.931628e-01	ci right 6.995480e-01	k: 55709	n:80000
IDE   80000 perm   18 sec   (4529 perm/sec)   p_kst 6.963625e-01   p_cons 1.787500e-02   p_joint 8.943750e-02

Joint ci ratio: 4.167367e-02	ci left: 8.764270e-02	ci right 9.138381e-02	k: 8055	n:90000
Cons ci ratio: 9.706272e-02	ci left: 1.693532e-02	ci right 1.867374e-02	k: 1601	n:90000
KS ci ratio: 8.619992e-03	ci left: 6.937518e-01	ci right 6.997689e-01	k: 62709	n:90000
IDE   90000 perm   20 sec   (4446 perm/sec)   p_kst 6.967667e-01   p_cons 1.778889e-02   p_joint 8.950000e-02

Outputting figure to mutsig2_images.part000000000082/IDE.6_3160_90000_0.69677_0.017789_0.0895.png
                gene_name: IDE
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.091 

Current progress: 27 percent done.
HTR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
Cons ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
KS ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
HTR1B   10000 perm   2 sec   (6329 perm/sec)   p_kst 5.145000e-01   p_cons 6.799000e-01   p_joint 9.051000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1B.5_1177_10000_0.5145_0.6799_0.9051.png
                gene_name: HTR1B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 29 percent done.
HTR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
Cons ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
KS ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
HTR3C   10000 perm   1 sec   (6696 perm/sec)   p_kst 1.029000e-01   p_cons 8.023000e-01   p_joint 3.411000e-01

Joint ci ratio: 4.960391e-02	ci left: 2.320123e-01	ci right 2.438640e-01	k: 4758	n:20000
Cons ci ratio: 1.334215e-02	ci left: 8.064138e-01	ci right 8.172954e-01	k: 16238	n:20000
KS ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
HTR3C   20000 perm   3 sec   (6008 perm/sec)   p_kst 1.033000e-01   p_cons 8.119000e-01   p_joint 2.379000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3C.5_1380_20000_0.1033_0.8119_0.2379.png
                gene_name: HTR3C
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 30 percent done.
HTR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
KS ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
HTR6   10000 perm   1 sec   (6747 perm/sec)   p_kst 3.224000e-01   p_cons 8.000000e-04   p_joint 1.340000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
KS ci ratio: 3.996491e-02	ci left: 3.182609e-01	ci right 3.312901e-01	k: 6495	n:20000
HTR6   20000 perm   3 sec   (6020 perm/sec)   p_kst 3.247500e-01   p_cons 6.000000e-04   p_joint 6.300000e-03

Joint ci ratio: 3.214209e-01	ci left: 4.141425e-03	ci right 5.756742e-03	k: 147	n:30000
Cons ci ratio: 9.797223e-01	ci left: 2.798723e-04	ci right 8.245401e-04	k: 15	n:30000
KS ci ratio: 3.142273e-02	ci left: 3.361660e-01	ci right 3.469314e-01	k: 10246	n:30000
HTR6   30000 perm   5 sec   (5752 perm/sec)   p_kst 3.415333e-01   p_cons 5.000000e-04   p_joint 4.900000e-03

Joint ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
Cons ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
KS ci ratio: 2.812472e-02	ci left: 3.222784e-01	ci right 3.314968e-01	k: 13075	n:40000
HTR6   40000 perm   7 sec   (5559 perm/sec)   p_kst 3.268750e-01   p_cons 5.250000e-04   p_joint 3.275000e-03

Joint ci ratio: 3.381790e-01	ci left: 2.227623e-03	ci right 3.151624e-03	k: 133	n:50000
Cons ci ratio: 7.541931e-01	ci left: 3.397085e-04	ci right 7.618283e-04	k: 26	n:50000
KS ci ratio: 2.513838e-02	ci left: 3.230676e-01	ci right 3.313124e-01	k: 16359	n:50000
HTR6   50000 perm   9 sec   (5409 perm/sec)   p_kst 3.271800e-01   p_cons 5.200000e-04   p_joint 2.660000e-03

Joint ci ratio: 3.134403e-01	ci left: 2.193063e-03	ci right 3.022883e-03	k: 155	n:60000
Cons ci ratio: 7.155059e-01	ci left: 3.237191e-04	ci right 6.940741e-04	k: 29	n:60000
KS ci ratio: 2.233746e-02	ci left: 3.353781e-01	ci right 3.429708e-01	k: 20350	n:60000
HTR6   60000 perm   11 sec   (5278 perm/sec)   p_kst 3.391667e-01   p_cons 4.833333e-04   p_joint 2.583333e-03

Joint ci ratio: 1.935012e-01	ci left: 5.264483e-03	ci right 6.405637e-03	k: 407	n:70000
Cons ci ratio: 6.624305e-01	ci left: 3.363940e-04	ci right 6.786715e-04	k: 34	n:70000
KS ci ratio: 2.065666e-02	ci left: 3.361768e-01	ci right 3.432079e-01	k: 23778	n:70000
HTR6   70000 perm   14 sec   (5165 perm/sec)   p_kst 3.396857e-01   p_cons 4.857143e-04   p_joint 5.814286e-03

Joint ci ratio: 1.887501e-01	ci left: 4.856263e-03	ci right 5.880111e-03	k: 428	n:80000
Cons ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
KS ci ratio: 1.933384e-02	ci left: 3.361434e-01	ci right 3.427183e-01	k: 27154	n:80000
HTR6   80000 perm   16 sec   (5062 perm/sec)   p_kst 3.394250e-01   p_cons 5.375000e-04   p_joint 5.350000e-03

Joint ci ratio: 1.328741e-01	ci left: 8.941012e-03	ci right 1.022423e-02	k: 861	n:90000
Cons ci ratio: 5.656492e-01	ci left: 3.837337e-04	ci right 6.943850e-04	k: 47	n:90000
KS ci ratio: 1.823597e-02	ci left: 3.361399e-01	ci right 3.423372e-01	k: 30531	n:90000
HTR6   90000 perm   18 sec   (4963 perm/sec)   p_kst 3.392333e-01   p_cons 5.222222e-04   p_joint 9.566667e-03

Joint ci ratio: 1.320146e-01	ci left: 8.162715e-03	ci right 9.326048e-03	k: 873	n:100000
Cons ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
KS ci ratio: 1.727875e-02	ci left: 3.368541e-01	ci right 3.427352e-01	k: 33979	n:100000
HTR6   100000 perm   21 sec   (4862 perm/sec)   p_kst 3.397900e-01   p_cons 5.400000e-04   p_joint 8.730000e-03

Joint ci ratio: 1.427446e-01	ci left: 6.322843e-03	ci right 7.303432e-03	k: 748	n:110000
Cons ci ratio: 5.102013e-01	ci left: 4.004039e-04	ci right 6.815697e-04	k: 58	n:110000
KS ci ratio: 1.646930e-02	ci left: 3.371368e-01	ci right 3.427444e-01	k: 37393	n:110000
HTR6   110000 perm   23 sec   (4773 perm/sec)   p_kst 3.399364e-01   p_cons 5.272727e-04   p_joint 6.800000e-03

Joint ci ratio: 1.450435e-01	ci left: 5.611022e-03	ci right 6.496438e-03	k: 725	n:120000
Cons ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
KS ci ratio: 1.578147e-02	ci left: 3.368787e-01	ci right 3.422457e-01	k: 40747	n:120000
HTR6   120000 perm   26 sec   (4686 perm/sec)   p_kst 3.395583e-01   p_cons 5.416667e-04   p_joint 6.041667e-03

Joint ci ratio: 1.431085e-01	ci left: 5.327648e-03	ci right 6.156171e-03	k: 745	n:130000
Cons ci ratio: 4.752437e-01	ci left: 3.994376e-04	ci right 6.544747e-04	k: 67	n:130000
KS ci ratio: 1.515966e-02	ci left: 3.370638e-01	ci right 3.422203e-01	k: 44153	n:130000
HTR6   130000 perm   28 sec   (4602 perm/sec)   p_kst 3.396385e-01   p_cons 5.153846e-04   p_joint 5.730769e-03

Joint ci ratio: 1.396966e-01	ci left: 5.202014e-03	ci right 5.990104e-03	k: 782	n:140000
Cons ci ratio: 4.586800e-01	ci left: 4.024180e-04	ci right 6.476146e-04	k: 72	n:140000
KS ci ratio: 1.462299e-02	ci left: 3.367055e-01	ci right 3.416725e-01	k: 47486	n:140000
HTR6   140000 perm   31 sec   (4521 perm/sec)   p_kst 3.391857e-01   p_cons 5.142857e-04   p_joint 5.585714e-03

Joint ci ratio: 1.343115e-01	ci left: 5.267270e-03	ci right 6.032029e-03	k: 846	n:150000
Cons ci ratio: 4.437357e-01	ci left: 4.051352e-04	ci right 6.415374e-04	k: 77	n:150000
KS ci ratio: 1.412335e-02	ci left: 3.369104e-01	ci right 3.417092e-01	k: 50896	n:150000
HTR6   150000 perm   34 sec   (4445 perm/sec)   p_kst 3.393067e-01   p_cons 5.133333e-04   p_joint 5.640000e-03

Joint ci ratio: 1.367924e-01	ci left: 4.756837e-03	ci right 5.461279e-03	k: 816	n:160000
Cons ci ratio: 4.275934e-01	ci left: 4.132020e-04	ci right 6.430287e-04	k: 83	n:160000
KS ci ratio: 1.368081e-02	ci left: 3.367927e-01	ci right 3.414382e-01	k: 54258	n:160000
HTR6   160000 perm   37 sec   (4373 perm/sec)   p_kst 3.391125e-01   p_cons 5.187500e-04   p_joint 5.100000e-03

Joint ci ratio: 1.376622e-01	ci left: 4.420166e-03	ci right 5.079251e-03	k: 806	n:170000
Cons ci ratio: 4.154092e-01	ci left: 4.151881e-04	ci right 6.377174e-04	k: 88	n:170000
KS ci ratio: 1.327498e-02	ci left: 3.367731e-01	ci right 3.412795e-01	k: 57634	n:170000
HTR6   170000 perm   40 sec   (4302 perm/sec)   p_kst 3.390235e-01   p_cons 5.176471e-04   p_joint 4.741176e-03

Joint ci ratio: 1.498195e-01	ci left: 3.504960e-03	ci right 4.077871e-03	k: 681	n:180000
Cons ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
KS ci ratio: 1.323873e-02	ci left: 3.253708e-01	ci right 3.297125e-01	k: 58957	n:180000
HTR6   180000 perm   43 sec   (4235 perm/sec)   p_kst 3.275389e-01   p_cons 5.166667e-04   p_joint 3.783333e-03

Joint ci ratio: 1.459141e-01	ci left: 3.508021e-03	ci right 4.065182e-03	k: 718	n:190000
Cons ci ratio: 3.979130e-01	ci left: 4.092834e-04	ci right 6.169783e-04	k: 96	n:190000
KS ci ratio: 1.287694e-02	ci left: 3.257261e-01	ci right 3.299528e-01	k: 62289	n:190000
HTR6   190000 perm   46 sec   (4170 perm/sec)   p_kst 3.278368e-01   p_cons 5.052632e-04   p_joint 3.778947e-03

Joint ci ratio: 1.431568e-01	ci left: 3.467552e-03	ci right 4.006989e-03	k: 746	n:200000
Cons ci ratio: 3.919010e-01	ci left: 4.023292e-04	ci right 6.026123e-04	k: 99	n:200000
KS ci ratio: 1.254810e-02	ci left: 3.258775e-01	ci right 3.299974e-01	k: 65587	n:200000
HTR6   200000 perm   49 sec   (4108 perm/sec)   p_kst 3.279350e-01   p_cons 4.950000e-04   p_joint 3.730000e-03

Joint ci ratio: 1.407325e-01	ci left: 3.421837e-03	ci right 3.944391e-03	k: 772	n:210000
Cons ci ratio: 3.880426e-01	ci left: 3.917602e-04	ci right 5.843705e-04	k: 101	n:210000
KS ci ratio: 1.224733e-02	ci left: 3.258684e-01	ci right 3.298887e-01	k: 68854	n:210000
HTR6   210000 perm   52 sec   (4046 perm/sec)   p_kst 3.278762e-01   p_cons 4.809524e-04   p_joint 3.676190e-03

Joint ci ratio: 1.403803e-01	ci left: 3.283825e-03	ci right 3.783942e-03	k: 776	n:220000
Cons ci ratio: 3.788677e-01	ci left: 3.944896e-04	ci right 5.827158e-04	k: 106	n:220000
KS ci ratio: 1.198426e-02	ci left: 3.252349e-01	ci right 3.291606e-01	k: 71983	n:220000
HTR6   220000 perm   55 sec   (3986 perm/sec)   p_kst 3.271955e-01   p_cons 4.818182e-04   p_joint 3.527273e-03

Joint ci ratio: 1.407552e-01	ci left: 3.124252e-03	ci right 3.601443e-03	k: 772	n:230000
Cons ci ratio: 3.686712e-01	ci left: 4.009749e-04	ci right 5.859062e-04	k: 112	n:230000
KS ci ratio: 1.172350e-02	ci left: 3.251783e-01	ci right 3.290173e-01	k: 75232	n:230000
HTR6   230000 perm   59 sec   (3929 perm/sec)   p_kst 3.270957e-01   p_cons 4.869565e-04   p_joint 3.356522e-03

Joint ci ratio: 1.396815e-01	ci left: 3.042312e-03	ci right 3.503147e-03	k: 784	n:240000
Cons ci ratio: 3.607758e-01	ci left: 4.031919e-04	ci right 5.842277e-04	k: 117	n:240000
KS ci ratio: 1.148764e-02	ci left: 3.247987e-01	ci right 3.285555e-01	k: 78402	n:240000
HTR6   240000 perm   62 sec   (3874 perm/sec)   p_kst 3.266750e-01   p_cons 4.875000e-04   p_joint 3.266667e-03

Joint ci ratio: 1.396015e-01	ci left: 2.924467e-03	ci right 3.367176e-03	k: 785	n:250000
Cons ci ratio: 3.577588e-01	ci left: 3.943418e-04	ci right 5.695783e-04	k: 119	n:250000
KS ci ratio: 1.125409e-02	ci left: 3.248935e-01	ci right 3.285745e-01	k: 81683	n:250000
HTR6   250000 perm   65 sec   (3818 perm/sec)   p_kst 3.267320e-01   p_cons 4.760000e-04   p_joint 3.140000e-03

Joint ci ratio: 1.164626e-01	ci left: 4.085712e-03	ci right 4.594665e-03	k: 1127	n:260000
Cons ci ratio: 3.533702e-01	ci left: 3.896825e-04	ci right 5.602367e-04	k: 122	n:260000
KS ci ratio: 1.104098e-02	ci left: 3.247129e-01	ci right 3.283217e-01	k: 84894	n:260000
HTR6   260000 perm   69 sec   (3765 perm/sec)   p_kst 3.265154e-01   p_cons 4.692308e-04   p_joint 4.334615e-03

Joint ci ratio: 1.145997e-01	ci left: 4.067464e-03	ci right 4.565490e-03	k: 1164	n:270000
Cons ci ratio: 3.477613e-01	ci left: 3.887602e-04	ci right 5.556014e-04	k: 126	n:270000
KS ci ratio: 1.083570e-02	ci left: 3.247016e-01	ci right 3.282428e-01	k: 88147	n:270000
HTR6   270000 perm   73 sec   (3713 perm/sec)   p_kst 3.264704e-01   p_cons 4.666667e-04   p_joint 4.311111e-03

Joint ci ratio: 1.143133e-01	ci left: 3.942998e-03	ci right 4.424496e-03	k: 1170	n:280000
Cons ci ratio: 3.385548e-01	ci left: 3.977222e-04	ci right 5.629039e-04	k: 133	n:280000
KS ci ratio: 1.063515e-02	ci left: 3.249521e-01	ci right 3.284300e-01	k: 91473	n:280000
HTR6   280000 perm   76 sec   (3661 perm/sec)   p_kst 3.266893e-01   p_cons 4.750000e-04   p_joint 4.178571e-03

Joint ci ratio: 1.138346e-01	ci left: 3.840520e-03	ci right 4.307408e-03	k: 1180	n:290000
Cons ci ratio: 3.312199e-01	ci left: 4.029581e-04	ci right 5.659160e-04	k: 139	n:290000
KS ci ratio: 1.045632e-02	ci left: 3.247244e-01	ci right 3.281411e-01	k: 94665	n:290000
HTR6   290000 perm   80 sec   (3612 perm/sec)   p_kst 3.264310e-01   p_cons 4.793103e-04   p_joint 4.068966e-03

Joint ci ratio: 1.315001e-01	ci left: 2.759079e-03	ci right 3.150620e-03	k: 885	n:300000
Cons ci ratio: 3.277282e-01	ci left: 3.986989e-04	ci right 5.578767e-04	k: 142	n:300000
KS ci ratio: 1.028122e-02	ci left: 3.247255e-01	ci right 3.280846e-01	k: 97921	n:300000
HTR6   300000 perm   84 sec   (3564 perm/sec)   p_kst 3.264033e-01   p_cons 4.733333e-04   p_joint 2.950000e-03

Joint ci ratio: 8.996500e-02	ci left: 5.813147e-03	ci right 6.363889e-03	k: 1886	n:310000
Cons ci ratio: 3.254616e-01	ci left: 3.917601e-04	ci right 5.468598e-04	k: 144	n:310000
KS ci ratio: 1.013761e-02	ci left: 3.237314e-01	ci right 3.270332e-01	k: 100868	n:310000
HTR6   310000 perm   88 sec   (3517 perm/sec)   p_kst 3.253806e-01   p_cons 4.645161e-04   p_joint 6.083871e-03

Joint ci ratio: 9.004565e-02	ci left: 5.622298e-03	ci right 6.155460e-03	k: 1883	n:320000
Cons ci ratio: 3.210636e-01	ci left: 3.910034e-04	ci right 5.432813e-04	k: 148	n:320000
KS ci ratio: 9.981066e-03	ci left: 3.236207e-01	ci right 3.268700e-01	k: 104078	n:320000
HTR6   320000 perm   92 sec   (3471 perm/sec)   p_kst 3.252437e-01   p_cons 4.625000e-04   p_joint 5.884375e-03

Joint ci ratio: 9.115512e-02	ci left: 5.318613e-03	ci right 5.829522e-03	k: 1838	n:330000
Cons ci ratio: 3.147875e-01	ci left: 3.958862e-04	ci right 5.464457e-04	k: 154	n:330000
KS ci ratio: 9.826535e-03	ci left: 3.237410e-01	ci right 3.269409e-01	k: 107362	n:330000
HTR6   330000 perm   96 sec   (3427 perm/sec)   p_kst 3.253394e-01   p_cons 4.666667e-04   p_joint 5.569697e-03

Joint ci ratio: 8.715478e-02	ci left: 5.656833e-03	ci right 6.175172e-03	k: 2010	n:340000
Cons ci ratio: 3.088657e-01	ci left: 4.005090e-04	ci right 5.493970e-04	k: 160	n:340000
KS ci ratio: 9.680717e-03	ci left: 3.237752e-01	ci right 3.269277e-01	k: 110619	n:340000
HTR6   340000 perm   100 sec   (3384 perm/sec)   p_kst 3.253500e-01   p_cons 4.705882e-04   p_joint 5.911765e-03

Joint ci ratio: 8.605025e-02	ci left: 5.640561e-03	ci right 6.150529e-03	k: 2062	n:350000
Cons ci ratio: 3.014652e-01	ci left: 4.101736e-04	ci right 5.583012e-04	k: 168	n:350000
KS ci ratio: 9.543936e-03	ci left: 3.236823e-01	ci right 3.267891e-01	k: 113832	n:350000
HTR6   350000 perm   105 sec   (3342 perm/sec)   p_kst 3.252343e-01   p_cons 4.800000e-04   p_joint 5.891429e-03

Joint ci ratio: 8.557884e-02	ci left: 5.546385e-03	ci right 6.044954e-03	k: 2085	n:360000
Cons ci ratio: 2.979600e-01	ci left: 4.090556e-04	ci right 5.547370e-04	k: 172	n:360000
KS ci ratio: 9.412972e-03	ci left: 3.235866e-01	ci right 3.266496e-01	k: 117042	n:360000
HTR6   360000 perm   109 sec   (3302 perm/sec)   p_kst 3.251167e-01   p_cons 4.777778e-04   p_joint 5.791667e-03

Joint ci ratio: 8.421604e-02	ci left: 5.576368e-03	ci right 6.069258e-03	k: 2153	n:370000
Cons ci ratio: 2.945744e-01	ci left: 4.080075e-04	ci right 5.513561e-04	k: 176	n:370000
KS ci ratio: 9.279366e-03	ci left: 3.238688e-01	ci right 3.268907e-01	k: 120390	n:370000
HTR6   370000 perm   113 sec   (3262 perm/sec)   p_kst 3.253784e-01   p_cons 4.756757e-04   p_joint 5.818919e-03

Joint ci ratio: 8.404612e-02	ci left: 5.452793e-03	ci right 5.933739e-03	k: 2162	n:380000
Cons ci ratio: 2.904998e-01	ci left: 4.094630e-04	ci right 5.509673e-04	k: 181	n:380000
KS ci ratio: 9.151507e-03	ci left: 3.241259e-01	ci right 3.271083e-01	k: 123734	n:380000
HTR6   380000 perm   118 sec   (3225 perm/sec)   p_kst 3.256158e-01   p_cons 4.763158e-04   p_joint 5.689474e-03

Joint ci ratio: 8.666970e-02	ci left: 4.991725e-03	ci right 5.446443e-03	k: 2034	n:390000
Cons ci ratio: 2.858261e-01	ci left: 4.132369e-04	ci right 5.533332e-04	k: 187	n:390000
KS ci ratio: 9.036382e-03	ci left: 3.240013e-01	ci right 3.269449e-01	k: 126934	n:390000
HTR6   390000 perm   122 sec   (3186 perm/sec)   p_kst 3.254718e-01   p_cons 4.794872e-04   p_joint 5.215385e-03

Joint ci ratio: 7.795083e-02	ci left: 6.037521e-03	ci right 6.529672e-03	k: 2512	n:400000
Cons ci ratio: 2.835732e-01	ci left: 4.098704e-04	ci right 5.475342e-04	k: 190	n:400000
KS ci ratio: 8.923716e-03	ci left: 3.239705e-01	ci right 3.268770e-01	k: 130169	n:400000
HTR6   400000 perm   127 sec   (3151 perm/sec)   p_kst 3.254225e-01   p_cons 4.750000e-04   p_joint 6.280000e-03

Joint ci ratio: 8.127729e-02	ci left: 5.412096e-03	ci right 5.872982e-03	k: 2312	n:410000
Cons ci ratio: 2.821010e-01	ci left: 4.044054e-04	ci right 5.394031e-04	k: 192	n:410000
KS ci ratio: 8.811048e-03	ci left: 3.241462e-01	ci right 3.270173e-01	k: 133488	n:410000
HTR6   410000 perm   132 sec   (3114 perm/sec)   p_kst 3.255805e-01   p_cons 4.682927e-04   p_joint 5.639024e-03

Joint ci ratio: 8.039631e-02	ci left: 5.402209e-03	ci right 5.857033e-03	k: 2363	n:420000
Cons ci ratio: 2.771195e-01	ci left: 4.102752e-04	ci right 5.443921e-04	k: 199	n:420000
KS ci ratio: 8.705468e-03	ci left: 3.241662e-01	ci right 3.270029e-01	k: 136745	n:420000
HTR6   420000 perm   136 sec   (3078 perm/sec)   p_kst 3.255833e-01   p_cons 4.738095e-04   p_joint 5.626190e-03

Joint ci ratio: 7.944419e-02	ci left: 5.406486e-03	ci right 5.856029e-03	k: 2420	n:430000
Cons ci ratio: 2.697974e-01	ci left: 4.245621e-04	ci right 5.590619e-04	k: 210	n:430000
KS ci ratio: 8.601726e-03	ci left: 3.242807e-01	ci right 3.270844e-01	k: 140043	n:430000
HTR6   430000 perm   141 sec   (3044 perm/sec)   p_kst 3.256814e-01   p_cons 4.883721e-04   p_joint 5.627907e-03

Joint ci ratio: 7.852511e-02	ci left: 5.410598e-03	ci right 5.855041e-03	k: 2477	n:440000
Cons ci ratio: 2.672762e-01	ci left: 4.233919e-04	ci right 5.560575e-04	k: 214	n:440000
KS ci ratio: 8.506756e-03	ci left: 3.241246e-01	ci right 3.268959e-01	k: 143224	n:440000
HTR6   440000 perm   146 sec   (3011 perm/sec)   p_kst 3.255091e-01   p_cons 4.863636e-04   p_joint 5.629545e-03

Joint ci ratio: 8.129779e-02	ci left: 4.930971e-03	ci right 5.350995e-03	k: 2312	n:450000
Cons ci ratio: 2.648243e-01	ci left: 4.222792e-04	ci right 5.531811e-04	k: 218	n:450000
KS ci ratio: 8.412987e-03	ci left: 3.240733e-01	ci right 3.268134e-01	k: 146449	n:450000
HTR6   450000 perm   151 sec   (2977 perm/sec)   p_kst 3.254422e-01   p_cons 4.844444e-04   p_joint 5.137778e-03

Joint ci ratio: 8.086430e-02	ci left: 4.877017e-03	ci right 5.290125e-03	k: 2337	n:460000
Cons ci ratio: 2.630294e-01	ci left: 4.191894e-04	ci right 5.481078e-04	k: 221	n:460000
KS ci ratio: 8.320604e-03	ci left: 3.241112e-01	ci right 3.268214e-01	k: 149714	n:460000
HTR6   460000 perm   156 sec   (2945 perm/sec)   p_kst 3.254652e-01   p_cons 4.804348e-04   p_joint 5.080435e-03

Joint ci ratio: 7.986221e-02	ci left: 4.896261e-03	ci right 5.305621e-03	k: 2396	n:470000
Cons ci ratio: 2.612705e-01	ci left: 4.162340e-04	ci right 5.432475e-04	k: 224	n:470000
KS ci ratio: 8.232037e-03	ci left: 3.241031e-01	ci right 3.267842e-01	k: 152958	n:470000
HTR6   470000 perm   161 sec   (2914 perm/sec)   p_kst 3.254426e-01   p_cons 4.765957e-04   p_joint 5.097872e-03

Joint ci ratio: 7.988322e-02	ci left: 4.792204e-03	ci right 5.192974e-03	k: 2395	n:480000
Cons ci ratio: 2.595464e-01	ci left: 4.134044e-04	ci right 5.385871e-04	k: 227	n:480000
KS ci ratio: 8.144152e-03	ci left: 3.242078e-01	ci right 3.268610e-01	k: 156256	n:480000
HTR6   480000 perm   166 sec   (2883 perm/sec)   p_kst 3.255333e-01   p_cons 4.729167e-04   p_joint 4.989583e-03

Joint ci ratio: 7.958745e-02	ci left: 4.730400e-03	ci right 5.124468e-03	k: 2413	n:490000
Cons ci ratio: 2.561970e-01	ci left: 4.164212e-04	ci right 5.406300e-04	k: 233	n:490000
KS ci ratio: 8.062057e-03	ci left: 3.241432e-01	ci right 3.267691e-01	k: 159473	n:490000
HTR6   490000 perm   172 sec   (2853 perm/sec)   p_kst 3.254551e-01   p_cons 4.755102e-04   p_joint 4.924490e-03

Joint ci ratio: 7.872760e-02	ci left: 4.739695e-03	ci right 5.130076e-03	k: 2466	n:500000
Cons ci ratio: 2.540351e-01	ci left: 4.155813e-04	ci right 5.383278e-04	k: 237	n:500000
KS ci ratio: 7.979596e-03	ci left: 3.242352e-01	ci right 3.268348e-01	k: 162767	n:500000
HTR6   500000 perm   177 sec   (2824 perm/sec)   p_kst 3.255340e-01   p_cons 4.740000e-04   p_joint 4.932000e-03

Joint ci ratio: 7.934786e-02	ci left: 4.573707e-03	ci right 4.953521e-03	k: 2428	n:510000
Cons ci ratio: 2.503792e-01	ci left: 4.202907e-04	ci right 5.423634e-04	k: 244	n:510000
KS ci ratio: 7.902190e-03	ci left: 3.241807e-01	ci right 3.267546e-01	k: 165988	n:510000
HTR6   510000 perm   182 sec   (2795 perm/sec)   p_kst 3.254667e-01   p_cons 4.784314e-04   p_joint 4.760784e-03

Joint ci ratio: 7.961539e-02	ci left: 4.455583e-03	ci right 4.826893e-03	k: 2412	n:520000
Cons ci ratio: 2.478627e-01	ci left: 4.212234e-04	ci right 5.421478e-04	k: 249	n:520000
KS ci ratio: 7.825794e-03	ci left: 3.241957e-01	ci right 3.267447e-01	k: 169244	n:520000
HTR6   520000 perm   188 sec   (2767 perm/sec)   p_kst 3.254692e-01   p_cons 4.788462e-04   p_joint 4.638462e-03

Joint ci ratio: 8.042646e-02	ci left: 4.282746e-03	ci right 4.643459e-03	k: 2364	n:530000
Cons ci ratio: 2.463892e-01	ci left: 4.185856e-04	ci right 5.379289e-04	k: 252	n:530000
KS ci ratio: 7.754736e-03	ci left: 3.240312e-01	ci right 3.265556e-01	k: 172405	n:530000
HTR6   530000 perm   193 sec   (2739 perm/sec)   p_kst 3.252925e-01   p_cons 4.754717e-04   p_joint 4.460377e-03

Joint ci ratio: 7.311826e-02	ci left: 5.100801e-03	ci right 5.489720e-03	k: 2858	n:540000
Cons ci ratio: 2.407444e-01	ci left: 4.317005e-04	ci right 5.515424e-04	k: 264	n:540000
KS ci ratio: 7.683017e-03	ci left: 3.240190e-01	ci right 3.265199e-01	k: 175645	n:540000
HTR6   540000 perm   199 sec   (2712 perm/sec)   p_kst 3.252685e-01   p_cons 4.888889e-04   p_joint 5.292593e-03

Joint ci ratio: 7.246232e-02	ci left: 5.100884e-03	ci right 5.486173e-03	k: 2910	n:550000
Cons ci ratio: 2.376259e-01	ci left: 4.358161e-04	ci right 5.550028e-04	k: 271	n:550000
KS ci ratio: 7.611865e-03	ci left: 3.240873e-01	ci right 3.265654e-01	k: 178929	n:550000
HTR6   550000 perm   205 sec   (2684 perm/sec)   p_kst 3.253255e-01   p_cons 4.927273e-04   p_joint 5.290909e-03

Joint ci ratio: 7.428314e-02	ci left: 4.764352e-03	ci right 5.133655e-03	k: 2770	n:560000
Cons ci ratio: 2.363266e-01	ci left: 4.330727e-04	ci right 5.507668e-04	k: 274	n:560000
KS ci ratio: 7.544187e-03	ci left: 3.240641e-01	ci right 3.265199e-01	k: 182163	n:560000
HTR6   560000 perm   211 sec   (2657 perm/sec)   p_kst 3.252911e-01   p_cons 4.892857e-04   p_joint 4.946429e-03

Joint ci ratio: 7.393861e-02	ci left: 4.725532e-03	ci right 5.090054e-03	k: 2796	n:570000
Cons ci ratio: 2.333746e-01	ci left: 4.370332e-04	ci right 5.541060e-04	k: 281	n:570000
KS ci ratio: 7.478342e-03	ci left: 3.240382e-01	ci right 3.264723e-01	k: 185395	n:570000
HTR6   570000 perm   217 sec   (2629 perm/sec)   p_kst 3.252544e-01   p_cons 4.929825e-04   p_joint 4.905263e-03

Joint ci ratio: 7.375650e-02	ci left: 4.667745e-03	ci right 5.026884e-03	k: 2810	n:580000
Cons ci ratio: 2.325520e-01	ci left: 4.327451e-04	ci right 5.482018e-04	k: 283	n:580000
KS ci ratio: 7.416669e-03	ci left: 3.238670e-01	ci right 3.262796e-01	k: 188542	n:580000
HTR6   580000 perm   223 sec   (2603 perm/sec)   p_kst 3.250724e-01   p_cons 4.879310e-04   p_joint 4.844828e-03

Joint ci ratio: 7.347122e-02	ci left: 4.625229e-03	ci right 4.979661e-03	k: 2832	n:590000
Cons ci ratio: 2.317381e-01	ci left: 4.286030e-04	ci right 5.424970e-04	k: 285	n:590000
KS ci ratio: 7.356239e-03	ci left: 3.237168e-01	ci right 3.261086e-01	k: 191698	n:590000
HTR6   590000 perm   229 sec   (2579 perm/sec)   p_kst 3.249119e-01   p_cons 4.830508e-04   p_joint 4.800000e-03

Joint ci ratio: 7.306073e-02	ci left: 4.600495e-03	ci right 4.950979e-03	k: 2864	n:600000
Cons ci ratio: 2.297385e-01	ci left: 4.293113e-04	ci right 5.422696e-04	k: 290	n:600000
KS ci ratio: 7.295404e-03	ci left: 3.236833e-01	ci right 3.260550e-01	k: 194921	n:600000
HTR6   600000 perm   235 sec   (2553 perm/sec)   p_kst 3.248683e-01   p_cons 4.833333e-04   p_joint 4.773333e-03

Joint ci ratio: 7.293583e-02	ci left: 4.541167e-03	ci right 4.886514e-03	k: 2874	n:610000
Cons ci ratio: 2.281758e-01	ci left: 4.284547e-04	ci right 5.403128e-04	k: 294	n:610000
KS ci ratio: 7.235810e-03	ci left: 3.236658e-01	ci right 3.260179e-01	k: 198153	n:610000
HTR6   610000 perm   241 sec   (2528 perm/sec)   p_kst 3.248410e-01   p_cons 4.819672e-04   p_joint 4.711475e-03

Joint ci ratio: 7.249660e-02	ci left: 4.523346e-03	ci right 4.865179e-03	k: 2909	n:620000
Cons ci ratio: 2.262664e-01	ci left: 4.291496e-04	ci right 5.401208e-04	k: 299	n:620000
KS ci ratio: 7.175463e-03	ci left: 3.237826e-01	ci right 3.261158e-01	k: 201468	n:620000
HTR6   620000 perm   248 sec   (2504 perm/sec)   p_kst 3.249484e-01   p_cons 4.822581e-04   p_joint 4.691935e-03

Joint ci ratio: 7.204063e-02	ci left: 4.509214e-03	ci right 4.847746e-03	k: 2946	n:630000
Cons ci ratio: 2.247730e-01	ci left: 4.283283e-04	ci right 5.382548e-04	k: 303	n:630000
KS ci ratio: 7.119459e-03	ci left: 3.237197e-01	ci right 3.260342e-01	k: 204672	n:630000
HTR6   630000 perm   254 sec   (2480 perm/sec)   p_kst 3.248762e-01   p_cons 4.809524e-04   p_joint 4.676190e-03

Joint ci ratio: 7.147293e-02	ci left: 4.510878e-03	ci right 4.846755e-03	k: 2993	n:640000
Cons ci ratio: 2.240377e-01	ci left: 4.245849e-04	ci right 5.331450e-04	k: 305	n:640000
KS ci ratio: 7.063689e-03	ci left: 3.237245e-01	ci right 3.260208e-01	k: 207918	n:640000
HTR6   640000 perm   260 sec   (2457 perm/sec)   p_kst 3.248719e-01   p_cons 4.765625e-04   p_joint 4.676563e-03

Joint ci ratio: 7.102412e-02	ci left: 4.498898e-03	ci right 4.831694e-03	k: 3031	n:650000
Cons ci ratio: 2.225878e-01	ci left: 4.238624e-04	ci right 5.314403e-04	k: 309	n:650000
KS ci ratio: 7.010562e-03	ci left: 3.236447e-01	ci right 3.259231e-01	k: 211109	n:650000
HTR6   650000 perm   267 sec   (2434 perm/sec)   p_kst 3.247831e-01   p_cons 4.753846e-04   p_joint 4.663077e-03

Joint ci ratio: 7.118010e-02	ci left: 4.411380e-03	ci right 4.738447e-03	k: 3018	n:660000
Cons ci ratio: 2.218737e-01	ci left: 4.203018e-04	ci right 5.265870e-04	k: 311	n:660000
KS ci ratio: 6.959048e-03	ci left: 3.235400e-01	ci right 3.258009e-01	k: 214282	n:660000
HTR6   660000 perm   274 sec   (2412 perm/sec)   p_kst 3.246697e-01   p_cons 4.712121e-04   p_joint 4.572727e-03

Joint ci ratio: 6.843580e-02	ci left: 4.706319e-03	ci right 5.041268e-03	k: 3264	n:670000
Cons ci ratio: 2.194254e-01	ci left: 4.238991e-04	ci right 5.297517e-04	k: 318	n:670000
KS ci ratio: 6.907571e-03	ci left: 3.235072e-01	ci right 3.257510e-01	k: 217501	n:670000
HTR6   670000 perm   280 sec   (2390 perm/sec)   p_kst 3.246284e-01   p_cons 4.746269e-04   p_joint 4.871642e-03

Joint ci ratio: 6.800018e-02	ci left: 4.697819e-03	ci right 5.029950e-03	k: 3306	n:680000
Cons ci ratio: 2.187413e-01	ci left: 4.204450e-04	ci right 5.250636e-04	k: 320	n:680000
KS ci ratio: 6.856392e-03	ci left: 3.235283e-01	ci right 3.257556e-01	k: 220756	n:680000
HTR6   680000 perm   287 sec   (2370 perm/sec)   p_kst 3.246412e-01   p_cons 4.705882e-04   p_joint 4.861765e-03

Joint ci ratio: 7.069499e-02	ci left: 4.279360e-03	ci right 4.594388e-03	k: 3060	n:690000
Cons ci ratio: 2.180634e-01	ci left: 4.170915e-04	ci right 5.205110e-04	k: 322	n:690000
KS ci ratio: 6.806176e-03	ci left: 3.235589e-01	ci right 3.257701e-01	k: 224018	n:690000
HTR6   690000 perm   294 sec   (2348 perm/sec)   p_kst 3.246638e-01   p_cons 4.666667e-04   p_joint 4.434783e-03

Joint ci ratio: 7.061619e-02	ci left: 4.228046e-03	ci right 4.538935e-03	k: 3067	n:700000
Cons ci ratio: 2.167257e-01	ci left: 4.165362e-04	ci right 5.191001e-04	k: 326	n:700000
KS ci ratio: 6.756366e-03	ci left: 3.236330e-01	ci right 3.258284e-01	k: 227311	n:700000
HTR6   700000 perm   301 sec   (2328 perm/sec)   p_kst 3.247300e-01   p_cons 4.657143e-04   p_joint 4.381429e-03

Joint ci ratio: 7.001357e-02	ci left: 4.241832e-03	ci right 4.550965e-03	k: 3120	n:710000
Cons ci ratio: 2.147641e-01	ci left: 4.186637e-04	ci right 5.206954e-04	k: 332	n:710000
KS ci ratio: 6.709356e-03	ci left: 3.235925e-01	ci right 3.257723e-01	k: 230524	n:710000
HTR6   710000 perm   308 sec   (2308 perm/sec)   p_kst 3.246817e-01   p_cons 4.676056e-04   p_joint 4.394366e-03

Joint ci ratio: 7.075962e-02	ci left: 4.094218e-03	ci right 4.395903e-03	k: 3055	n:720000
Cons ci ratio: 2.122295e-01	ci left: 4.233661e-04	ci right 5.251676e-04	k: 340	n:720000
KS ci ratio: 6.662259e-03	ci left: 3.236226e-01	ci right 3.257872e-01	k: 233787	n:720000
HTR6   720000 perm   315 sec   (2287 perm/sec)   p_kst 3.247042e-01   p_cons 4.722222e-04   p_joint 4.243056e-03

Joint ci ratio: 7.031255e-02	ci left: 4.090615e-03	ci right 4.390052e-03	k: 3094	n:730000
Cons ci ratio: 2.113023e-01	ci left: 4.214581e-04	ci right 5.223008e-04	k: 343	n:730000
KS ci ratio: 6.616058e-03	ci left: 3.236573e-01	ci right 3.258071e-01	k: 237054	n:730000
HTR6   730000 perm   322 sec   (2268 perm/sec)   p_kst 3.247315e-01   p_cons 4.698630e-04   p_joint 4.238356e-03

Joint ci ratio: 7.124520e-02	ci left: 3.929130e-03	ci right 4.220719e-03	k: 3014	n:740000
Cons ci ratio: 2.103871e-01	ci left: 4.196027e-04	ci right 5.195106e-04	k: 346	n:740000
KS ci ratio: 6.572364e-03	ci left: 3.235872e-01	ci right 3.257223e-01	k: 240244	n:740000
HTR6   740000 perm   329 sec   (2249 perm/sec)   p_kst 3.246541e-01   p_cons 4.675676e-04   p_joint 4.072973e-03

Joint ci ratio: 7.087051e-02	ci left: 3.918649e-03	ci right 4.207868e-03	k: 3046	n:750000
Cons ci ratio: 2.097838e-01	ci left: 4.165343e-04	ci right 5.153906e-04	k: 348	n:750000
KS ci ratio: 6.528134e-03	ci left: 3.236123e-01	ci right 3.257331e-01	k: 243504	n:750000
HTR6   750000 perm   336 sec   (2231 perm/sec)   p_kst 3.246720e-01   p_cons 4.640000e-04   p_joint 4.061333e-03

Joint ci ratio: 7.052467e-02	ci left: 3.905863e-03	ci right 4.192674e-03	k: 3076	n:760000
Cons ci ratio: 2.085920e-01	ci left: 4.160410e-04	ci right 5.141477e-04	k: 352	n:760000
KS ci ratio: 6.485350e-03	ci left: 3.235986e-01	ci right 3.257054e-01	k: 246735	n:760000
HTR6   760000 perm   343 sec   (2213 perm/sec)   p_kst 3.246513e-01   p_cons 4.631579e-04   p_joint 4.047368e-03

Joint ci ratio: 7.003689e-02	ci left: 3.910001e-03	ci right 4.195049e-03	k: 3119	n:770000
Cons ci ratio: 2.077114e-01	ci left: 4.143309e-04	ci right 5.115694e-04	k: 355	n:770000
KS ci ratio: 6.443873e-03	ci left: 3.235529e-01	ci right 3.256458e-01	k: 249941	n:770000
HTR6   770000 perm   351 sec   (2195 perm/sec)   p_kst 3.245987e-01   p_cons 4.610390e-04   p_joint 4.050649e-03

Joint ci ratio: 6.951496e-02	ci left: 3.919078e-03	ci right 4.202573e-03	k: 3166	n:780000
Cons ci ratio: 2.068419e-01	ci left: 4.126654e-04	ci right 5.090564e-04	k: 358	n:780000
KS ci ratio: 6.403125e-03	ci left: 3.235122e-01	ci right 3.255916e-01	k: 253150	n:780000
HTR6   780000 perm   358 sec   (2178 perm/sec)   p_kst 3.245513e-01   p_cons 4.589744e-04   p_joint 4.058974e-03

Joint ci ratio: 6.901531e-02	ci left: 3.926689e-03	ci right 4.208612e-03	k: 3212	n:790000
Cons ci ratio: 2.056992e-01	ci left: 4.122436e-04	ci right 5.079371e-04	k: 362	n:790000
KS ci ratio: 6.362627e-03	ci left: 3.235081e-01	ci right 3.255742e-01	k: 256387	n:790000
HTR6   790000 perm   366 sec   (2160 perm/sec)   p_kst 3.245405e-01   p_cons 4.582278e-04   p_joint 4.065823e-03

Joint ci ratio: 6.977333e-02	ci left: 3.792843e-03	ci right 4.068268e-03	k: 3143	n:800000
Cons ci ratio: 2.054170e-01	ci left: 4.082761e-04	ci right 5.029022e-04	k: 363	n:800000
KS ci ratio: 6.321067e-03	ci left: 3.236302e-01	ci right 3.256836e-01	k: 259725	n:800000
HTR6   800000 perm   373 sec   (2143 perm/sec)   p_kst 3.246562e-01   p_cons 4.537500e-04   p_joint 3.928750e-03

Joint ci ratio: 6.949818e-02	ci left: 3.776344e-03	ci right 4.049445e-03	k: 3168	n:810000
Cons ci ratio: 2.042976e-01	ci left: 4.079206e-04	ci right 5.018848e-04	k: 367	n:810000
KS ci ratio: 6.283087e-03	ci left: 3.235557e-01	ci right 3.255962e-01	k: 262906	n:810000
HTR6   810000 perm   381 sec   (2126 perm/sec)   p_kst 3.245753e-01   p_cons 4.530864e-04   p_joint 3.911111e-03

Joint ci ratio: 6.903126e-02	ci left: 3.781822e-03	ci right 4.053408e-03	k: 3211	n:820000
Cons ci ratio: 2.034701e-01	ci left: 4.064177e-04	ci right 4.996094e-04	k: 370	n:820000
KS ci ratio: 6.243837e-03	ci left: 3.236195e-01	ci right 3.256476e-01	k: 266199	n:820000
HTR6   820000 perm   389 sec   (2110 perm/sec)   p_kst 3.246329e-01   p_cons 4.512195e-04   p_joint 3.915854e-03

Joint ci ratio: 6.635862e-02	ci left: 4.047781e-03	ci right 4.326781e-03	k: 3474	n:830000
Cons ci ratio: 2.015770e-01	ci left: 4.095272e-04	ci right 5.024508e-04	k: 377	n:830000
KS ci ratio: 6.207344e-03	ci left: 3.235385e-01	ci right 3.255543e-01	k: 269373	n:830000
HTR6   830000 perm   397 sec   (2092 perm/sec)   p_kst 3.245458e-01   p_cons 4.542169e-04   p_joint 4.185542e-03

Joint ci ratio: 6.591416e-02	ci left: 4.054621e-03	ci right 4.332148e-03	k: 3521	n:840000
Cons ci ratio: 1.997358e-01	ci left: 4.125666e-04	ci right 5.052206e-04	k: 384	n:840000
KS ci ratio: 6.168768e-03	ci left: 3.236522e-01	ci right 3.256561e-01	k: 272709	n:840000
HTR6   840000 perm   405 sec   (2076 perm/sec)   p_kst 3.246536e-01   p_cons 4.571429e-04   p_joint 4.191667e-03

Joint ci ratio: 6.667084e-02	ci left: 3.915510e-03	ci right 4.186711e-03	k: 3442	n:850000
Cons ci ratio: 1.989623e-01	ci left: 4.110661e-04	ci right 5.029822e-04	k: 387	n:850000
KS ci ratio: 6.133074e-03	ci left: 3.236081e-01	ci right 3.256001e-01	k: 275913	n:850000
HTR6   850000 perm   413 sec   (2059 perm/sec)   p_kst 3.246035e-01   p_cons 4.552941e-04   p_joint 4.049412e-03

Joint ci ratio: 6.637308e-02	ci left: 3.905427e-03	ci right 4.174675e-03	k: 3473	n:860000
Cons ci ratio: 1.969419e-01	ci left: 4.151277e-04	ci right 5.068962e-04	k: 395	n:860000
KS ci ratio: 6.096408e-03	ci left: 3.236790e-01	ci right 3.256594e-01	k: 279215	n:860000
HTR6   860000 perm   421 sec   (2043 perm/sec)   p_kst 3.246686e-01   p_cons 4.593023e-04   p_joint 4.038372e-03

Joint ci ratio: 6.625983e-02	ci left: 3.874099e-03	ci right 4.140714e-03	k: 3485	n:870000
Cons ci ratio: 1.962003e-01	ci left: 4.136346e-04	ci right 5.046877e-04	k: 398	n:870000
KS ci ratio: 6.061694e-03	ci left: 3.236540e-01	ci right 3.256230e-01	k: 282435	n:870000
HTR6   870000 perm   429 sec   (2028 perm/sec)   p_kst 3.246379e-01   p_cons 4.574713e-04   p_joint 4.005747e-03

Joint ci ratio: 6.592047e-02	ci left: 3.870308e-03	ci right 4.135246e-03	k: 3521	n:880000
Cons ci ratio: 1.954671e-01	ci left: 4.121761e-04	ci right 5.025286e-04	k: 401	n:880000
KS ci ratio: 6.027316e-03	ci left: 3.236478e-01	ci right 3.256056e-01	k: 285671	n:880000
HTR6   880000 perm   437 sec   (2013 perm/sec)   p_kst 3.246261e-01   p_cons 4.556818e-04   p_joint 4.001136e-03

Joint ci ratio: 6.654126e-02	ci left: 3.754990e-03	ci right 4.014548e-03	k: 3456	n:890000
Cons ci ratio: 1.945018e-01	ci left: 4.118199e-04	ci right 5.015958e-04	k: 405	n:890000
KS ci ratio: 5.993824e-03	ci left: 3.236194e-01	ci right 3.255660e-01	k: 288887	n:890000
HTR6   890000 perm   445 sec   (1998 perm/sec)   p_kst 3.245921e-01   p_cons 4.550562e-04   p_joint 3.883146e-03

Joint ci ratio: 6.609319e-02	ci left: 3.764625e-03	ci right 4.023029e-03	k: 3503	n:900000
Cons ci ratio: 1.935508e-01	ci left: 4.114727e-04	ci right 5.006826e-04	k: 409	n:900000
KS ci ratio: 5.960325e-03	ci left: 3.236327e-01	ci right 3.255685e-01	k: 292140	n:900000
HTR6   900000 perm   454 sec   (1983 perm/sec)   p_kst 3.246000e-01   p_cons 4.544444e-04   p_joint 3.892222e-03

Joint ci ratio: 6.605677e-02	ci left: 3.727576e-03	ci right 3.983291e-03	k: 3507	n:910000
Cons ci ratio: 1.928467e-01	ci left: 4.100882e-04	ci right 4.986366e-04	k: 412	n:910000
KS ci ratio: 5.927843e-03	ci left: 3.236116e-01	ci right 3.255367e-01	k: 295362	n:910000
HTR6   910000 perm   462 sec   (1969 perm/sec)   p_kst 3.245736e-01   p_cons 4.527473e-04   p_joint 3.853846e-03

Joint ci ratio: 6.180694e-02	ci left: 4.218681e-03	ci right 4.488802e-03	k: 4004	n:920000
Cons ci ratio: 1.907787e-01	ci left: 4.149437e-04	ci right 5.034683e-04	k: 421	n:920000
KS ci ratio: 5.896046e-03	ci left: 3.235792e-01	ci right 3.254937e-01	k: 298573	n:920000
HTR6   920000 perm   471 sec   (1955 perm/sec)   p_kst 3.245359e-01   p_cons 4.576087e-04   p_joint 4.352174e-03

Joint ci ratio: 6.692683e-02	ci left: 3.552237e-03	ci right 3.799257e-03	k: 3417	n:930000
Cons ci ratio: 1.894366e-01	ci left: 4.166265e-04	ci right 5.048129e-04	k: 427	n:930000
KS ci ratio: 5.864655e-03	ci left: 3.235549e-01	ci right 3.254591e-01	k: 301791	n:930000
HTR6   930000 perm   479 sec   (1941 perm/sec)   p_kst 3.245065e-01   p_cons 4.591398e-04   p_joint 3.674194e-03

Joint ci ratio: 7.256729e-02	ci left: 2.982354e-03	ci right 3.207960e-03	k: 2908	n:940000
Cons ci ratio: 2.034760e-01	ci left: 3.545336e-04	ci right 4.358308e-04	k: 370	n:940000
KS ci ratio: 5.831962e-03	ci left: 3.236662e-01	ci right 3.255604e-01	k: 305136	n:940000
HTR6   940000 perm   488 sec   (1927 perm/sec)   p_kst 3.246128e-01   p_cons 3.936170e-04   p_joint 3.093617e-03

Joint ci ratio: 7.220834e-02	ci left: 2.980934e-03	ci right 3.205271e-03	k: 2937	n:950000
Cons ci ratio: 2.018501e-01	ci left: 3.567970e-04	ci right 4.378789e-04	k: 376	n:950000
KS ci ratio: 5.802205e-03	ci left: 3.235943e-01	ci right 3.254783e-01	k: 308309	n:950000
HTR6   950000 perm   496 sec   (1914 perm/sec)   p_kst 3.245358e-01   p_cons 3.957895e-04   p_joint 3.091579e-03

Joint ci ratio: 7.328054e-02	ci left: 2.862945e-03	ci right 3.081737e-03	k: 2852	n:960000
Cons ci ratio: 2.013170e-01	ci left: 3.550585e-04	ci right 4.355061e-04	k: 378	n:960000
KS ci ratio: 5.771363e-03	ci left: 3.236405e-01	ci right 3.255147e-01	k: 311594	n:960000
HTR6   960000 perm   505 sec   (1900 perm/sec)   p_kst 3.245771e-01   p_cons 3.937500e-04   p_joint 2.970833e-03

Joint ci ratio: 7.301265e-02	ci left: 2.854683e-03	ci right 3.072013e-03	k: 2873	n:970000
Cons ci ratio: 1.997419e-01	ci left: 3.572732e-04	ci right 4.375120e-04	k: 384	n:970000
KS ci ratio: 5.740130e-03	ci left: 3.237527e-01	ci right 3.256174e-01	k: 314944	n:970000
HTR6   970000 perm   514 sec   (1887 perm/sec)   p_kst 3.246845e-01   p_cons 3.958763e-04   p_joint 2.961856e-03

Joint ci ratio: 7.274768e-02	ci left: 2.846592e-03	ci right 3.062485e-03	k: 2894	n:980000
Cons ci ratio: 1.994833e-01	ci left: 3.545969e-04	ci right 4.341190e-04	k: 385	n:980000
KS ci ratio: 5.712069e-03	ci left: 3.236577e-01	ci right 3.255127e-01	k: 318093	n:980000
HTR6   980000 perm   523 sec   (1874 perm/sec)   p_kst 3.245847e-01   p_cons 3.928571e-04   p_joint 2.953061e-03

Joint ci ratio: 7.239847e-02	ci left: 2.845608e-03	ci right 3.060347e-03	k: 2922	n:990000
Cons ci ratio: 1.984577e-01	ci left: 3.548542e-04	ci right 4.339754e-04	k: 389	n:990000
KS ci ratio: 5.682857e-03	ci left: 3.236847e-01	ci right 3.255304e-01	k: 321361	n:990000
HTR6   990000 perm   532 sec   (1861 perm/sec)   p_kst 3.246071e-01   p_cons 3.929293e-04   p_joint 2.951515e-03

Joint ci ratio: 7.226329e-02	ci left: 2.827952e-03	ci right 3.040944e-03	k: 2933	n:1000000
Cons ci ratio: 1.979510e-01	ci left: 3.532064e-04	ci right 4.317348e-04	k: 391	n:1000000
KS ci ratio: 5.654282e-03	ci left: 3.236963e-01	ci right 3.255327e-01	k: 324614	n:1000000
HTR6   1000000 perm   541 sec   (1848 perm/sec)   p_kst 3.246140e-01   p_cons 3.910000e-04   p_joint 2.933000e-03

Joint ci ratio: 7.242544e-02	ci left: 2.787312e-03	ci right 2.997734e-03	k: 2920	n:1010000
Cons ci ratio: 1.969487e-01	ci left: 3.534739e-04	ci right 4.316161e-04	k: 395	n:1010000
KS ci ratio: 5.625931e-03	ci left: 3.237235e-01	ci right 3.255508e-01	k: 327883	n:1010000
HTR6   1010000 perm   550 sec   (1836 perm/sec)   p_kst 3.246366e-01   p_cons 3.910891e-04   p_joint 2.891089e-03

Joint ci ratio: 7.219139e-02	ci left: 2.778275e-03	ci right 2.987309e-03	k: 2939	n:1020000
Cons ci ratio: 1.801999e-01	ci left: 4.219433e-04	ci right 5.064257e-04	k: 472	n:1020000
KS ci ratio: 5.598314e-03	ci left: 3.237256e-01	ci right 3.255440e-01	k: 331127	n:1020000
HTR6   1020000 perm   559 sec   (1823 perm/sec)   p_kst 3.246343e-01   p_cons 4.627451e-04   p_joint 2.881373e-03

Joint ci ratio: 7.183795e-02	ci left: 2.778950e-03	ci right 2.986968e-03	k: 2968	n:1030000
Cons ci ratio: 1.796313e-01	ci left: 4.206282e-04	ci right 5.045526e-04	k: 475	n:1030000
KS ci ratio: 5.571446e-03	ci left: 3.237006e-01	ci right 3.255101e-01	k: 334343	n:1030000
HTR6   1030000 perm   569 sec   (1812 perm/sec)   p_kst 3.246049e-01   p_cons 4.611650e-04   p_joint 2.881553e-03

Joint ci ratio: 7.150161e-02	ci left: 2.778670e-03	ci right 2.985653e-03	k: 2996	n:1040000
Cons ci ratio: 1.794432e-01	ci left: 4.175020e-04	ci right 5.007060e-04	k: 476	n:1040000
KS ci ratio: 5.544791e-03	ci left: 3.236896e-01	ci right 3.254903e-01	k: 337573	n:1040000
HTR6   1040000 perm   578 sec   (1799 perm/sec)   p_kst 3.245894e-01   p_cons 4.576923e-04   p_joint 2.880769e-03

Joint ci ratio: 7.226836e-02	ci left: 2.693281e-03	ci right 2.896144e-03	k: 2933	n:1050000
Cons ci ratio: 1.783251e-01	ci left: 4.189842e-04	ci right 5.019072e-04	k: 482	n:1050000
KS ci ratio: 5.518275e-03	ci left: 3.236978e-01	ci right 3.254899e-01	k: 340823	n:1050000
HTR6   1050000 perm   587 sec   (1787 perm/sec)   p_kst 3.245933e-01   p_cons 4.590476e-04   p_joint 2.793333e-03

Joint ci ratio: 7.196252e-02	ci left: 2.691032e-03	ci right 2.892832e-03	k: 2958	n:1060000
Cons ci ratio: 1.777740e-01	ci left: 4.177356e-04	ci right 5.001284e-04	k: 485	n:1060000
KS ci ratio: 5.492289e-03	ci left: 3.236936e-01	ci right 3.254772e-01	k: 344060	n:1060000
HTR6   1060000 perm   597 sec   (1776 perm/sec)   p_kst 3.245849e-01   p_cons 4.575472e-04   p_joint 2.790566e-03

Joint ci ratio: 7.162444e-02	ci left: 2.691580e-03	ci right 2.892435e-03	k: 2986	n:1070000
Cons ci ratio: 1.768664e-01	ci left: 4.182970e-04	ci right 5.003344e-04	k: 490	n:1070000
KS ci ratio: 5.466819e-03	ci left: 3.236773e-01	ci right 3.254526e-01	k: 347284	n:1070000
HTR6   1070000 perm   607 sec   (1764 perm/sec)   p_kst 3.245645e-01   p_cons 4.579439e-04   p_joint 2.790654e-03

Joint ci ratio: 7.113744e-02	ci left: 2.703944e-03	ci right 2.904293e-03	k: 3027	n:1080000
Cons ci ratio: 1.759727e-01	ci left: 4.188491e-04	ci right 5.005355e-04	k: 495	n:1080000
KS ci ratio: 5.440757e-03	ci left: 3.237373e-01	ci right 3.255044e-01	k: 350590	n:1080000
HTR6   1080000 perm   616 sec   (1752 perm/sec)   p_kst 3.246204e-01   p_cons 4.583333e-04   p_joint 2.802778e-03

Joint ci ratio: 7.093895e-02	ci left: 2.694456e-03	ci right 2.893521e-03	k: 3044	n:1090000
Cons ci ratio: 1.750924e-01	ci left: 4.193921e-04	ci right 5.007319e-04	k: 500	n:1090000
KS ci ratio: 5.416175e-03	ci left: 3.237063e-01	ci right 3.254652e-01	k: 353798	n:1090000
HTR6   1090000 perm   626 sec   (1741 perm/sec)   p_kst 3.245853e-01   p_cons 4.587156e-04   p_joint 2.792661e-03

Joint ci ratio: 6.424015e-02	ci left: 3.265237e-03	ci right 3.482845e-03	k: 3710	n:1100000
Cons ci ratio: 1.743976e-01	ci left: 4.190567e-04	ci right 4.999751e-04	k: 504	n:1100000
KS ci ratio: 5.391554e-03	ci left: 3.237059e-01	ci right 3.254568e-01	k: 357039	n:1100000
HTR6   1100000 perm   636 sec   (1730 perm/sec)   p_kst 3.245809e-01   p_cons 4.581818e-04   p_joint 3.372727e-03

Joint ci ratio: 6.394787e-02	ci left: 3.265960e-03	ci right 3.482590e-03	k: 3744	n:1110000
Cons ci ratio: 1.735406e-01	ci left: 4.195898e-04	ci right 5.001712e-04	k: 509	n:1110000
KS ci ratio: 5.368094e-03	ci left: 3.236380e-01	ci right 3.253809e-01	k: 360205	n:1110000
HTR6   1110000 perm   646 sec   (1718 perm/sec)   p_kst 3.245090e-01   p_cons 4.585586e-04   p_joint 3.372973e-03

Joint ci ratio: 6.361733e-02	ci left: 3.271066e-03	ci right 3.486872e-03	k: 3783	n:1120000
Cons ci ratio: 1.728640e-01	ci left: 4.192601e-04	ci right 4.994315e-04	k: 513	n:1120000
KS ci ratio: 5.343380e-03	ci left: 3.236990e-01	ci right 3.254341e-01	k: 363514	n:1120000
HTR6   1120000 perm   656 sec   (1707 perm/sec)   p_kst 3.245661e-01   p_cons 4.580357e-04   p_joint 3.377679e-03

Joint ci ratio: 6.340011e-02	ci left: 3.264762e-03	ci right 3.479389e-03	k: 3809	n:1130000
Cons ci ratio: 1.721954e-01	ci left: 4.189368e-04	ci right 4.987043e-04	k: 517	n:1130000
KS ci ratio: 5.319294e-03	ci left: 3.237349e-01	ci right 3.254624e-01	k: 366796	n:1130000
HTR6   1130000 perm   666 sec   (1696 perm/sec)   p_kst 3.245982e-01   p_cons 4.575221e-04   p_joint 3.370796e-03

Joint ci ratio: 6.315207e-02	ci left: 3.262023e-03	ci right 3.475600e-03	k: 3839	n:1140000
Cons ci ratio: 1.715344e-01	ci left: 4.186197e-04	ci right 4.979893e-04	k: 521	n:1140000
KS ci ratio: 5.296251e-03	ci left: 3.237107e-01	ci right 3.254305e-01	k: 370010	n:1140000
HTR6   1140000 perm   676 sec   (1686 perm/sec)   p_kst 3.245702e-01   p_cons 4.570175e-04   p_joint 3.367544e-03

Joint ci ratio: 6.289062e-02	ci left: 3.261045e-03	ci right 3.473642e-03	k: 3871	n:1150000
Cons ci ratio: 1.713706e-01	ci left: 4.158118e-04	ci right 4.945659e-04	k: 522	n:1150000
KS ci ratio: 5.273244e-03	ci left: 3.237086e-01	ci right 3.254210e-01	k: 373249	n:1150000
HTR6   1150000 perm   686 sec   (1676 perm/sec)   p_kst 3.245643e-01   p_cons 4.539130e-04   p_joint 3.366087e-03

Joint ci ratio: 6.256809e-02	ci left: 3.266875e-03	ci right 3.478720e-03	k: 3911	n:1160000
Cons ci ratio: 1.707190e-01	ci left: 4.155278e-04	ci right 4.938981e-04	k: 526	n:1160000
KS ci ratio: 5.250730e-03	ci left: 3.236902e-01	ci right 3.253951e-01	k: 376469	n:1160000
HTR6   1160000 perm   696 sec   (1665 perm/sec)   p_kst 3.245422e-01   p_cons 4.534483e-04   p_joint 3.371552e-03

Joint ci ratio: 6.235347e-02	ci left: 3.261669e-03	ci right 3.472425e-03	k: 3938	n:1170000
Cons ci ratio: 1.702353e-01	ci left: 4.144310e-04	ci right 4.923502e-04	k: 529	n:1170000
KS ci ratio: 5.228920e-03	ci left: 3.236371e-01	ci right 3.253347e-01	k: 379648	n:1170000
HTR6   1170000 perm   707 sec   (1655 perm/sec)   p_kst 3.244855e-01   p_cons 4.521368e-04   p_joint 3.365812e-03

Joint ci ratio: 6.332134e-02	ci left: 3.134758e-03	ci right 3.340573e-03	k: 3819	n:1180000
Cons ci ratio: 1.692797e-01	ci left: 4.157876e-04	ci right 4.934783e-04	k: 535	n:1180000
KS ci ratio: 5.206695e-03	ci left: 3.236426e-01	ci right 3.253329e-01	k: 382895	n:1180000
HTR6   1180000 perm   717 sec   (1645 perm/sec)   p_kst 3.244873e-01   p_cons 4.533898e-04   p_joint 3.236441e-03

Joint ci ratio: 6.327237e-02	ci left: 3.113377e-03	ci right 3.317624e-03	k: 3825	n:1190000
Cons ci ratio: 1.688080e-01	ci left: 4.147079e-04	ci right 4.919590e-04	k: 538	n:1190000
KS ci ratio: 5.184820e-03	ci left: 3.236420e-01	ci right 3.253252e-01	k: 386135	n:1190000
HTR6   1190000 perm   728 sec   (1635 perm/sec)   p_kst 3.244832e-01   p_cons 4.521008e-04   p_joint 3.214286e-03

Joint ci ratio: 6.291950e-02	ci left: 3.122701e-03	ci right 3.326375e-03	k: 3868	n:1200000
Cons ci ratio: 1.678761e-01	ci left: 4.160414e-04	ci right 4.930698e-04	k: 544	n:1200000
KS ci ratio: 5.162905e-03	ci left: 3.236682e-01	ci right 3.253444e-01	k: 389407	n:1200000
HTR6   1200000 perm   738 sec   (1625 perm/sec)   p_kst 3.245058e-01   p_cons 4.533333e-04   p_joint 3.223333e-03

Joint ci ratio: 6.274973e-02	ci left: 3.113975e-03	ci right 3.316513e-03	k: 3889	n:1210000
Cons ci ratio: 1.671113e-01	ci left: 4.165621e-04	ci right 4.933001e-04	k: 549	n:1210000
KS ci ratio: 5.141072e-03	ci left: 3.237104e-01	ci right 3.253797e-01	k: 392699	n:1210000
HTR6   1210000 perm   749 sec   (1615 perm/sec)   p_kst 3.245446e-01   p_cons 4.537190e-04   p_joint 3.214050e-03

Joint ci ratio: 6.065135e-02	ci left: 3.308780e-03	ci right 3.516539e-03	k: 4162	n:1220000
Cons ci ratio: 1.662071e-01	ci left: 4.178606e-04	ci right 4.943796e-04	k: 555	n:1220000
KS ci ratio: 5.120432e-03	ci left: 3.236733e-01	ci right 3.253357e-01	k: 395895	n:1220000
HTR6   1220000 perm   760 sec   (1605 perm/sec)   p_kst 3.245041e-01   p_cons 4.549180e-04   p_joint 3.411475e-03

Joint ci ratio: 6.037632e-02	ci left: 3.312306e-03	ci right 3.519311e-03	k: 4200	n:1230000
Cons ci ratio: 1.657606e-01	ci left: 4.168010e-04	ci right 4.929005e-04	k: 558	n:1230000
KS ci ratio: 5.100076e-03	ci left: 3.236336e-01	ci right 3.252892e-01	k: 399087	n:1230000
HTR6   1230000 perm   771 sec   (1596 perm/sec)   p_kst 3.244610e-01   p_cons 4.536585e-04   p_joint 3.414634e-03

Joint ci ratio: 6.087349e-02	ci left: 3.231583e-03	ci right 3.435264e-03	k: 4132	n:1240000
Cons ci ratio: 1.656128e-01	ci left: 4.142127e-04	ci right 4.897654e-04	k: 559	n:1240000
KS ci ratio: 5.079635e-03	ci left: 3.236228e-01	ci right 3.252716e-01	k: 402314	n:1240000
HTR6   1240000 perm   782 sec   (1586 perm/sec)   p_kst 3.244468e-01   p_cons 4.508065e-04   p_joint 3.332258e-03

Joint ci ratio: 6.109718e-02	ci left: 3.182094e-03	ci right 3.383419e-03	k: 4102	n:1250000
Cons ci ratio: 1.645871e-01	ci left: 4.162676e-04	ci right 4.916784e-04	k: 566	n:1250000
KS ci ratio: 5.058569e-03	ci left: 3.236872e-01	ci right 3.253296e-01	k: 405635	n:1250000
HTR6   1250000 perm   793 sec   (1577 perm/sec)   p_kst 3.245080e-01   p_cons 4.528000e-04   p_joint 3.281600e-03

Joint ci ratio: 6.083082e-02	ci left: 3.184975e-03	ci right 3.385573e-03	k: 4138	n:1260000
Cons ci ratio: 1.634379e-01	ci left: 4.190526e-04	ci right 4.943858e-04	k: 574	n:1260000
KS ci ratio: 5.038346e-03	ci left: 3.237000e-01	ci right 3.253358e-01	k: 408892	n:1260000
HTR6   1260000 perm   804 sec   (1567 perm/sec)   p_kst 3.245175e-01   p_cons 4.555556e-04   p_joint 3.284127e-03

Joint ci ratio: 6.063352e-02	ci left: 3.180833e-03	ci right 3.380498e-03	k: 4165	n:1270000
Cons ci ratio: 1.632962e-01	ci left: 4.165081e-04	ci right 4.913126e-04	k: 575	n:1270000
KS ci ratio: 5.019239e-03	ci left: 3.236362e-01	ci right 3.252654e-01	k: 412052	n:1270000
HTR6   1270000 perm   815 sec   (1558 perm/sec)   p_kst 3.244504e-01   p_cons 4.527559e-04   p_joint 3.279528e-03

Joint ci ratio: 6.061241e-02	ci left: 3.158290e-03	ci right 3.356468e-03	k: 4168	n:1280000
Cons ci ratio: 1.627322e-01	ci left: 4.162517e-04	ci right 4.907266e-04	k: 579	n:1280000
KS ci ratio: 4.999430e-03	ci left: 3.236538e-01	ci right 3.252767e-01	k: 415315	n:1280000
HTR6   1280000 perm   826 sec   (1549 perm/sec)   p_kst 3.244648e-01   p_cons 4.523438e-04   p_joint 3.256250e-03

Joint ci ratio: 6.033792e-02	ci left: 3.162819e-03	ci right 3.360351e-03	k: 4206	n:1290000
Cons ci ratio: 1.618969e-01	ci left: 4.174872e-04	ci right 4.917624e-04	k: 585	n:1290000
KS ci ratio: 4.979853e-03	ci left: 3.236712e-01	ci right 3.252878e-01	k: 418578	n:1290000
HTR6   1290000 perm   838 sec   (1540 perm/sec)   p_kst 3.244791e-01   p_cons 4.534884e-04   p_joint 3.260465e-03

Joint ci ratio: 6.028120e-02	ci left: 3.144550e-03	ci right 3.340750e-03	k: 4214	n:1300000
Cons ci ratio: 1.610743e-01	ci left: 4.187046e-04	ci right 4.927813e-04	k: 591	n:1300000
KS ci ratio: 4.960922e-03	ci left: 3.236514e-01	ci right 3.252617e-01	k: 421793	n:1300000
HTR6   1300000 perm   849 sec   (1531 perm/sec)   p_kst 3.244562e-01   p_cons 4.546154e-04   p_joint 3.241538e-03

Joint ci ratio: 6.000409e-02	ci left: 3.149870e-03	ci right 3.345467e-03	k: 4253	n:1310000
Cons ci ratio: 1.602641e-01	ci left: 4.199044e-04	ci right 4.937838e-04	k: 597	n:1310000
KS ci ratio: 4.941809e-03	ci left: 3.236670e-01	ci right 3.252712e-01	k: 425054	n:1310000
HTR6   1310000 perm   860 sec   (1523 perm/sec)   p_kst 3.244687e-01   p_cons 4.557252e-04   p_joint 3.246565e-03

Joint ci ratio: 5.980769e-02	ci left: 3.146901e-03	ci right 3.341652e-03	k: 4281	n:1320000
Cons ci ratio: 1.599969e-01	ci left: 4.181777e-04	ci right 4.916188e-04	k: 599	n:1320000
KS ci ratio: 4.923239e-03	ci left: 3.236536e-01	ci right 3.252517e-01	k: 428277	n:1320000
HTR6   1320000 perm   872 sec   (1514 perm/sec)   p_kst 3.244523e-01   p_cons 4.537879e-04   p_joint 3.243182e-03

Joint ci ratio: 5.959933e-02	ci left: 3.145460e-03	ci right 3.339420e-03	k: 4311	n:1330000
Cons ci ratio: 1.592028e-01	ci left: 4.193647e-04	ci right 4.926137e-04	k: 605	n:1330000
KS ci ratio: 4.904238e-03	ci left: 3.236976e-01	ci right 3.252897e-01	k: 431576	n:1330000
HTR6   1330000 perm   883 sec   (1506 perm/sec)   p_kst 3.244932e-01   p_cons 4.548872e-04   p_joint 3.241353e-03

Joint ci ratio: 5.977414e-02	ci left: 3.103606e-03	ci right 3.295566e-03	k: 4286	n:1340000
Cons ci ratio: 1.585500e-01	ci left: 4.198181e-04	ci right 4.928171e-04	k: 610	n:1340000
KS ci ratio: 4.886270e-03	ci left: 3.236678e-01	ci right 3.252539e-01	k: 434777	n:1340000
HTR6   1340000 perm   895 sec   (1497 perm/sec)   p_kst 3.244604e-01   p_cons 4.552239e-04   p_joint 3.198507e-03

Joint ci ratio: 5.964936e-02	ci left: 3.093750e-03	ci right 3.284687e-03	k: 4304	n:1350000
Cons ci ratio: 1.579052e-01	ci left: 4.202654e-04	ci right 4.930168e-04	k: 615	n:1350000
KS ci ratio: 4.868251e-03	ci left: 3.236606e-01	ci right 3.252409e-01	k: 438008	n:1350000
HTR6   1350000 perm   906 sec   (1489 perm/sec)   p_kst 3.244504e-01   p_cons 4.555556e-04   p_joint 3.188148e-03

Joint ci ratio: 5.940828e-02	ci left: 3.096354e-03	ci right 3.286654e-03	k: 4339	n:1360000
Cons ci ratio: 1.570155e-01	ci left: 4.221195e-04	ci right 4.947413e-04	k: 622	n:1360000
KS ci ratio: 4.850202e-03	ci left: 3.236742e-01	ci right 3.252486e-01	k: 441267	n:1360000
HTR6   1360000 perm   918 sec   (1481 perm/sec)   p_kst 3.244610e-01   p_cons 4.573529e-04   p_joint 3.190441e-03

Joint ci ratio: 5.922445e-02	ci left: 3.093169e-03	ci right 3.282664e-03	k: 4366	n:1370000
Cons ci ratio: 1.562647e-01	ci left: 4.232462e-04	ci right 4.956811e-04	k: 628	n:1370000
KS ci ratio: 4.832063e-03	ci left: 3.237138e-01	ci right 3.252825e-01	k: 444562	n:1370000
HTR6   1370000 perm   930 sec   (1473 perm/sec)   p_kst 3.244978e-01   p_cons 4.583942e-04   p_joint 3.186861e-03

Joint ci ratio: 5.900864e-02	ci left: 3.093600e-03	ci right 3.282408e-03	k: 4398	n:1380000
Cons ci ratio: 1.552801e-01	ci left: 4.257504e-04	ci right 4.981121e-04	k: 636	n:1380000
KS ci ratio: 4.813592e-03	ci left: 3.238014e-01	ci right 3.253645e-01	k: 447924	n:1380000
HTR6   1380000 perm   942 sec   (1465 perm/sec)   p_kst 3.245826e-01   p_cons 4.608696e-04   p_joint 3.186957e-03

Joint ci ratio: 5.877522e-02	ci left: 3.096153e-03	ci right 3.284344e-03	k: 4433	n:1390000
Cons ci ratio: 1.547949e-01	ci left: 4.254535e-04	ci right 4.975178e-04	k: 640	n:1390000
KS ci ratio: 4.796386e-03	ci left: 3.237914e-01	ci right 3.253489e-01	k: 451152	n:1390000
HTR6   1390000 perm   954 sec   (1457 perm/sec)   p_kst 3.245698e-01   p_cons 4.604317e-04   p_joint 3.189209e-03

Joint ci ratio: 5.849205e-02	ci left: 3.104302e-03	ci right 3.292048e-03	k: 4476	n:1400000
Cons ci ratio: 1.541947e-01	ci left: 4.258479e-04	ci right 4.976735e-04	k: 645	n:1400000
KS ci ratio: 4.778834e-03	ci left: 3.238301e-01	ci right 3.253820e-01	k: 454448	n:1400000
HTR6   1400000 perm   966 sec   (1450 perm/sec)   p_kst 3.246057e-01   p_cons 4.607143e-04   p_joint 3.197143e-03

Joint ci ratio: 5.869693e-02	ci left: 3.060620e-03	ci right 3.246394e-03	k: 4445	n:1410000
Cons ci ratio: 1.533659e-01	ci left: 4.276013e-04	ci right 4.992993e-04	k: 652	n:1410000
KS ci ratio: 4.761504e-03	ci left: 3.238654e-01	ci right 3.254119e-01	k: 457740	n:1410000
HTR6   1410000 perm   978 sec   (1442 perm/sec)   p_kst 3.246383e-01   p_cons 4.624113e-04   p_joint 3.152482e-03

Joint ci ratio: 5.853273e-02	ci left: 3.056414e-03	ci right 3.241396e-03	k: 4470	n:1420000
Cons ci ratio: 1.528983e-01	ci left: 4.272989e-04	ci right 4.987079e-04	k: 656	n:1420000
KS ci ratio: 4.743637e-03	ci left: 3.239671e-01	ci right 3.255082e-01	k: 461127	n:1420000
HTR6   1420000 perm   990 sec   (1434 perm/sec)   p_kst 3.247373e-01   p_cons 4.619718e-04   p_joint 3.147887e-03

Joint ci ratio: 5.830489e-02	ci left: 3.059159e-03	ci right 3.243562e-03	k: 4505	n:1430000
Cons ci ratio: 1.519757e-01	ci left: 4.296919e-04	ci right 5.010280e-04	k: 664	n:1430000
KS ci ratio: 4.727123e-03	ci left: 3.239605e-01	ci right 3.254962e-01	k: 464361	n:1430000
HTR6   1430000 perm   1002 sec   (1427 perm/sec)   p_kst 3.247280e-01   p_cons 4.643357e-04   p_joint 3.150350e-03

Joint ci ratio: 5.811822e-02	ci left: 3.057760e-03	ci right 3.241469e-03	k: 4534	n:1440000
Cons ci ratio: 1.512946e-01	ci left: 4.307165e-04	ci right 5.018732e-04	k: 670	n:1440000
KS ci ratio: 4.710429e-03	ci left: 3.239865e-01	ci right 3.255169e-01	k: 467642	n:1440000
HTR6   1440000 perm   1015 sec   (1419 perm/sec)   p_kst 3.247514e-01   p_cons 4.652778e-04   p_joint 3.148611e-03

Joint ci ratio: 5.791424e-02	ci left: 3.058421e-03	ci right 3.241504e-03	k: 4566	n:1450000
Cons ci ratio: 1.505114e-01	ci left: 4.323914e-04	ci right 5.034217e-04	k: 677	n:1450000
KS ci ratio: 4.693867e-03	ci left: 3.240164e-01	ci right 3.255415e-01	k: 470929	n:1450000
HTR6   1450000 perm   1027 sec   (1412 perm/sec)   p_kst 3.247786e-01   p_cons 4.668966e-04   p_joint 3.148966e-03

Joint ci ratio: 5.773129e-02	ci left: 3.057049e-03	ci right 3.239452e-03	k: 4595	n:1460000
Cons ci ratio: 1.500694e-01	ci left: 4.320665e-04	ci right 5.028163e-04	k: 681	n:1460000
KS ci ratio: 4.677514e-03	ci left: 3.240424e-01	ci right 3.255624e-01	k: 474211	n:1460000
HTR6   1460000 perm   1039 sec   (1405 perm/sec)   p_kst 3.248021e-01   p_cons 4.664384e-04   p_joint 3.147260e-03

Joint ci ratio: 5.760631e-02	ci left: 3.049661e-03	ci right 3.231217e-03	k: 4615	n:1470000
Cons ci ratio: 1.498500e-01	ci left: 4.304367e-04	ci right 5.008074e-04	k: 683	n:1470000
KS ci ratio: 4.662055e-03	ci left: 3.240001e-01	ci right 3.255148e-01	k: 477393	n:1470000
HTR6   1470000 perm   1052 sec   (1397 perm/sec)   p_kst 3.247571e-01   p_cons 4.646259e-04   p_joint 3.139456e-03

Joint ci ratio: 5.735816e-02	ci left: 3.055694e-03	ci right 3.236799e-03	k: 4655	n:1480000
Cons ci ratio: 1.490890e-01	ci left: 4.320813e-04	ci right 5.023300e-04	k: 690	n:1480000
KS ci ratio: 4.646296e-03	ci left: 3.240010e-01	ci right 3.255105e-01	k: 480638	n:1480000
HTR6   1480000 perm   1065 sec   (1390 perm/sec)   p_kst 3.247554e-01   p_cons 4.662162e-04   p_joint 3.145270e-03

Joint ci ratio: 5.732173e-02	ci left: 3.039155e-03	ci right 3.219161e-03	k: 4661	n:1490000
Cons ci ratio: 1.481272e-01	ci left: 4.349971e-04	ci right 5.052233e-04	k: 699	n:1490000
KS ci ratio: 4.630215e-03	ci left: 3.240474e-01	ci right 3.255519e-01	k: 483951	n:1490000
HTR6   1490000 perm   1077 sec   (1383 perm/sec)   p_kst 3.247993e-01   p_cons 4.691275e-04   p_joint 3.128188e-03

Joint ci ratio: 5.714432e-02	ci left: 3.037950e-03	ci right 3.217310e-03	k: 4690	n:1500000
Cons ci ratio: 1.473920e-01	ci left: 4.365913e-04	ci right 5.066942e-04	k: 706	n:1500000
KS ci ratio: 4.614320e-03	ci left: 3.240912e-01	ci right 3.255908e-01	k: 487261	n:1500000
HTR6   1500000 perm   1090 sec   (1376 perm/sec)   p_kst 3.248407e-01   p_cons 4.706667e-04   p_joint 3.126667e-03

Joint ci ratio: 5.694434e-02	ci left: 3.039374e-03	ci right 3.218169e-03	k: 4723	n:1510000
Cons ci ratio: 1.466676e-01	ci left: 4.381652e-04	ci right 5.081448e-04	k: 713	n:1510000
KS ci ratio: 4.599595e-03	ci left: 3.240385e-01	ci right 3.255330e-01	k: 490426	n:1510000
HTR6   1510000 perm   1103 sec   (1369 perm/sec)   p_kst 3.247854e-01   p_cons 4.721854e-04   p_joint 3.127815e-03

Joint ci ratio: 5.716995e-02	ci left: 2.995381e-03	ci right 3.172310e-03	k: 4686	n:1520000
Cons ci ratio: 1.461567e-01	ci left: 4.384515e-04	ci right 5.082116e-04	k: 718	n:1520000
KS ci ratio: 4.584322e-03	ci left: 3.240522e-01	ci right 3.255418e-01	k: 493691	n:1520000
HTR6   1520000 perm   1116 sec   (1362 perm/sec)   p_kst 3.247967e-01   p_cons 4.723684e-04   p_joint 3.082895e-03

Joint ci ratio: 5.698182e-02	ci left: 2.995776e-03	ci right 3.172126e-03	k: 4717	n:1530000
Cons ci ratio: 1.457519e-01	ci left: 4.381047e-04	ci right 5.075997e-04	k: 722	n:1530000
KS ci ratio: 4.569962e-03	ci left: 3.239926e-01	ci right 3.254773e-01	k: 496844	n:1530000
HTR6   1530000 perm   1129 sec   (1356 perm/sec)   p_kst 3.247346e-01   p_cons 4.718954e-04   p_joint 3.083007e-03

Joint ci ratio: 5.810491e-02	ci left: 2.861116e-03	ci right 3.032970e-03	k: 4537	n:1540000
Cons ci ratio: 1.456514e-01	ci left: 4.358855e-04	ci right 5.049767e-04	k: 723	n:1540000
KS ci ratio: 4.555204e-03	ci left: 3.239851e-01	ci right 3.254649e-01	k: 500076	n:1540000
HTR6   1540000 perm   1142 sec   (1349 perm/sec)   p_kst 3.247247e-01   p_cons 4.694805e-04   p_joint 2.946104e-03

Joint ci ratio: 5.786934e-02	ci left: 2.866182e-03	ci right 3.037619e-03	k: 4574	n:1550000
Cons ci ratio: 1.450515e-01	ci left: 4.368036e-04	ci right 5.057304e-04	k: 729	n:1550000
KS ci ratio: 4.540381e-03	ci left: 3.239976e-01	ci right 3.254727e-01	k: 503339	n:1550000
HTR6   1550000 perm   1155 sec   (1342 perm/sec)   p_kst 3.247348e-01   p_cons 4.703226e-04   p_joint 2.950968e-03

Joint ci ratio: 5.587194e-02	ci left: 3.057612e-03	ci right 3.233984e-03	k: 4906	n:1560000
Cons ci ratio: 1.447544e-01	ci left: 4.358569e-04	ci right 5.044813e-04	k: 732	n:1560000
KS ci ratio: 4.525814e-03	ci left: 3.239991e-01	ci right 3.254695e-01	k: 506585	n:1560000
HTR6   1560000 perm   1168 sec   (1335 perm/sec)   p_kst 3.247340e-01   p_cons 4.692308e-04   p_joint 3.144872e-03

Joint ci ratio: 5.572461e-02	ci left: 3.054466e-03	ci right 3.230177e-03	k: 4932	n:1570000
Cons ci ratio: 1.445575e-01	ci left: 4.343085e-04	ci right 5.025880e-04	k: 734	n:1570000
KS ci ratio: 4.511714e-03	ci left: 3.239688e-01	ci right 3.254344e-01	k: 509781	n:1570000
HTR6   1570000 perm   1182 sec   (1328 perm/sec)   p_kst 3.247013e-01   p_cons 4.675159e-04   p_joint 3.141401e-03

Joint ci ratio: 5.685783e-02	ci left: 2.914072e-03	ci right 3.085227e-03	k: 4738	n:1580000
Cons ci ratio: 1.442634e-01	ci left: 4.333898e-04	ci right 5.013744e-04	k: 737	n:1580000
KS ci ratio: 4.497096e-03	ci left: 3.240021e-01	ci right 3.254631e-01	k: 513077	n:1580000
HTR6   1580000 perm   1196 sec   (1322 perm/sec)   p_kst 3.247323e-01   p_cons 4.664557e-04   p_joint 2.998734e-03

Joint ci ratio: 5.674439e-02	ci left: 2.907524e-03	ci right 3.077942e-03	k: 4757	n:1590000
Cons ci ratio: 1.439712e-01	ci left: 4.324828e-04	ci right 5.001759e-04	k: 740	n:1590000
KS ci ratio: 4.482780e-03	ci left: 3.240193e-01	ci right 3.254757e-01	k: 516348	n:1590000
HTR6   1590000 perm   1209 sec   (1315 perm/sec)   p_kst 3.247472e-01   p_cons 4.654088e-04   p_joint 2.991824e-03

Joint ci ratio: 5.656042e-02	ci left: 2.908452e-03	ci right 3.078355e-03	k: 4788	n:1600000
Cons ci ratio: 1.435842e-01	ci left: 4.321899e-04	ci right 4.996397e-04	k: 744	n:1600000
KS ci ratio: 4.468026e-03	ci left: 3.240925e-01	ci right 3.255444e-01	k: 519709	n:1600000
HTR6   1600000 perm   1223 sec   (1309 perm/sec)   p_kst 3.248181e-01   p_cons 4.650000e-04   p_joint 2.992500e-03

Joint ci ratio: 5.642520e-02	ci left: 2.904471e-03	ci right 3.073722e-03	k: 4811	n:1610000
Cons ci ratio: 1.431048e-01	ci left: 4.324997e-04	ci right 4.997532e-04	k: 749	n:1610000
KS ci ratio: 4.454445e-03	ci left: 3.240636e-01	ci right 3.255109e-01	k: 522907	n:1610000
HTR6   1610000 perm   1236 sec   (1302 perm/sec)   p_kst 3.247870e-01   p_cons 4.652174e-04   p_joint 2.988199e-03

Joint ci ratio: 5.626762e-02	ci left: 2.902974e-03	ci right 3.071650e-03	k: 4838	n:1620000
Cons ci ratio: 1.427247e-01	ci left: 4.322108e-04	ci right 4.992257e-04	k: 753	n:1620000
KS ci ratio: 4.440856e-03	ci left: 3.240480e-01	ci right 3.254909e-01	k: 526126	n:1620000
HTR6   1620000 perm   1250 sec   (1296 perm/sec)   p_kst 3.247691e-01   p_cons 4.648148e-04   p_joint 2.986420e-03

Joint ci ratio: 5.605937e-02	ci left: 2.906940e-03	ci right 3.075201e-03	k: 4874	n:1630000
Cons ci ratio: 1.423477e-01	ci left: 4.319256e-04	ci right 4.987044e-04	k: 757	n:1630000
KS ci ratio: 4.427335e-03	ci left: 3.240382e-01	ci right 3.254766e-01	k: 529354	n:1630000
HTR6   1630000 perm   1264 sec   (1290 perm/sec)   p_kst 3.247571e-01   p_cons 4.644172e-04   p_joint 2.990184e-03

Joint ci ratio: 5.587624e-02	ci left: 2.908454e-03	ci right 3.076235e-03	k: 4906	n:1640000
Cons ci ratio: 1.416948e-01	ci left: 4.334086e-04	ci right 5.000834e-04	k: 764	n:1640000
KS ci ratio: 4.414084e-03	ci left: 3.240138e-01	ci right 3.254478e-01	k: 532558	n:1640000
HTR6   1640000 perm   1277 sec   (1284 perm/sec)   p_kst 3.247305e-01   p_cons 4.658537e-04   p_joint 2.991463e-03

Joint ci ratio: 5.572887e-02	ci left: 2.906365e-03	ci right 3.073569e-03	k: 4932	n:1650000
Cons ci ratio: 1.410508e-01	ci left: 4.348743e-04	ci right 5.014449e-04	k: 771	n:1650000
KS ci ratio: 4.400756e-03	ci left: 3.240091e-01	ci right 3.254387e-01	k: 535794	n:1650000
HTR6   1650000 perm   1291 sec   (1278 perm/sec)   p_kst 3.247236e-01   p_cons 4.672727e-04   p_joint 2.989091e-03

Joint ci ratio: 5.655164e-02	ci left: 2.804511e-03	ci right 2.968315e-03	k: 4790	n:1660000
Cons ci ratio: 1.406869e-01	ci left: 4.345793e-04	ci right 5.009187e-04	k: 775	n:1660000
KS ci ratio: 4.387838e-03	ci left: 3.239756e-01	ci right 3.254009e-01	k: 538982	n:1660000
HTR6   1660000 perm   1305 sec   (1272 perm/sec)   p_kst 3.246880e-01   p_cons 4.668675e-04   p_joint 2.885542e-03

Joint ci ratio: 5.641061e-02	ci left: 2.801886e-03	ci right 2.965115e-03	k: 4814	n:1670000
Cons ci ratio: 1.405060e-01	ci left: 4.331325e-04	ci right 4.991589e-04	k: 777	n:1670000
KS ci ratio: 4.374788e-03	ci left: 3.239671e-01	ci right 3.253880e-01	k: 542211	n:1670000
HTR6   1670000 perm   1319 sec   (1266 perm/sec)   p_kst 3.246772e-01   p_cons 4.652695e-04   p_joint 2.882635e-03

Joint ci ratio: 5.627646e-02	ci left: 2.798705e-03	ci right 2.961349e-03	k: 4837	n:1680000
Cons ci ratio: 1.403259e-01	ci left: 4.317029e-04	ci right 4.974200e-04	k: 779	n:1680000
KS ci ratio: 4.361552e-03	ci left: 3.239889e-01	ci right 3.254057e-01	k: 545491	n:1680000
HTR6   1680000 perm   1333 sec   (1260 perm/sec)   p_kst 3.246970e-01   p_cons 4.636905e-04   p_joint 2.879167e-03

Joint ci ratio: 5.427167e-02	ci left: 2.993978e-03	ci right 3.161578e-03	k: 5200	n:1690000
Cons ci ratio: 1.400569e-01	ci left: 4.308613e-04	ci right 4.963141e-04	k: 782	n:1690000
KS ci ratio: 4.348822e-03	ci left: 3.239715e-01	ci right 3.253841e-01	k: 548705	n:1690000
HTR6   1690000 perm   1347 sec   (1254 perm/sec)   p_kst 3.246775e-01   p_cons 4.627219e-04   p_joint 3.076923e-03

Joint ci ratio: 5.409509e-02	ci left: 2.996096e-03	ci right 3.163251e-03	k: 5234	n:1700000
Cons ci ratio: 1.398785e-01	ci left: 4.294621e-04	ci right 4.946123e-04	k: 784	n:1700000
KS ci ratio: 4.335906e-03	ci left: 3.239843e-01	ci right 3.253927e-01	k: 551970	n:1700000
HTR6   1700000 perm   1362 sec   (1248 perm/sec)   p_kst 3.246882e-01   p_cons 4.611765e-04   p_joint 3.078824e-03

Joint ci ratio: 5.395105e-02	ci left: 2.994728e-03	ci right 3.161348e-03	k: 5262	n:1710000
Cons ci ratio: 1.397007e-01	ci left: 4.280793e-04	ci right 4.929303e-04	k: 786	n:1710000
KS ci ratio: 4.323469e-03	ci left: 3.239602e-01	ci right 3.253644e-01	k: 555172	n:1710000
HTR6   1710000 perm   1376 sec   (1242 perm/sec)   p_kst 3.246620e-01   p_cons 4.596491e-04   p_joint 3.077193e-03

Joint ci ratio: 5.402882e-02	ci left: 2.968712e-03	ci right 3.134131e-03	k: 5247	n:1720000
Cons ci ratio: 1.389959e-01	ci left: 4.300795e-04	ci right 4.948776e-04	k: 794	n:1720000
KS ci ratio: 4.311046e-03	ci left: 3.239456e-01	ci right 3.253457e-01	k: 558390	n:1720000
HTR6   1720000 perm   1391 sec   (1237 perm/sec)   p_kst 3.246453e-01   p_cons 4.616279e-04   p_joint 3.050581e-03

Joint ci ratio: 5.382394e-02	ci left: 2.974362e-03	ci right 3.139447e-03	k: 5287	n:1730000
Cons ci ratio: 1.379583e-01	ci left: 4.342897e-04	ci right 4.991935e-04	k: 806	n:1730000
KS ci ratio: 4.298882e-03	ci left: 3.239156e-01	ci right 3.253116e-01	k: 561581	n:1730000
HTR6   1730000 perm   1405 sec   (1231 perm/sec)   p_kst 3.246133e-01   p_cons 4.658960e-04   p_joint 3.056069e-03

Joint ci ratio: 5.389602e-02	ci left: 2.949329e-03	ci right 3.113251e-03	k: 5273	n:1740000
Cons ci ratio: 1.378731e-01	ci left: 4.323486e-04	ci right 4.969192e-04	k: 807	n:1740000
KS ci ratio: 4.286770e-03	ci left: 3.238911e-01	ci right 3.252831e-01	k: 564781	n:1740000
HTR6   1740000 perm   1420 sec   (1225 perm/sec)   p_kst 3.245868e-01   p_cons 4.637931e-04   p_joint 3.030460e-03

Joint ci ratio: 5.390674e-02	ci left: 2.931348e-03	ci right 3.094304e-03	k: 5271	n:1750000
Cons ci ratio: 1.376179e-01	ci left: 4.315332e-04	ci right 4.958530e-04	k: 810	n:1750000
KS ci ratio: 4.274588e-03	ci left: 3.238846e-01	ci right 3.252726e-01	k: 568012	n:1750000
HTR6   1750000 perm   1435 sec   (1220 perm/sec)   p_kst 3.245783e-01   p_cons 4.628571e-04   p_joint 3.012000e-03

Joint ci ratio: 5.374385e-02	ci left: 2.932630e-03	ci right 3.095149e-03	k: 5303	n:1760000
Cons ci ratio: 1.372798e-01	ci left: 4.312759e-04	ci right 4.953865e-04	k: 814	n:1760000
KS ci ratio: 4.262707e-03	ci left: 3.238577e-01	ci right 3.252417e-01	k: 571207	n:1760000
HTR6   1760000 perm   1449 sec   (1215 perm/sec)   p_kst 3.245494e-01   p_cons 4.625000e-04   p_joint 3.013068e-03

Joint ci ratio: 5.361267e-02	ci left: 2.930553e-03	ci right 3.092549e-03	k: 5329	n:1770000
Cons ci ratio: 1.369442e-01	ci left: 4.310217e-04	ci right 4.949250e-04	k: 818	n:1770000
KS ci ratio: 4.251057e-03	ci left: 3.238176e-01	ci right 3.251977e-01	k: 574378	n:1770000
HTR6   1770000 perm   1464 sec   (1209 perm/sec)   p_kst 3.245073e-01   p_cons 4.621469e-04   p_joint 3.010734e-03

Joint ci ratio: 5.348245e-02	ci left: 2.928500e-03	ci right 3.089977e-03	k: 5355	n:1780000
Cons ci ratio: 1.366941e-01	ci left: 4.302279e-04	ci right 4.938876e-04	k: 821	n:1780000
KS ci ratio: 4.239833e-03	ci left: 3.237437e-01	ci right 3.251198e-01	k: 577488	n:1780000
HTR6   1780000 perm   1478 sec   (1204 perm/sec)   p_kst 3.244315e-01   p_cons 4.612360e-04   p_joint 3.008427e-03

Joint ci ratio: 5.344788e-02	ci left: 2.915998e-03	ci right 3.076678e-03	k: 5362	n:1790000
Cons ci ratio: 1.363627e-01	ci left: 4.299827e-04	ci right 4.934394e-04	k: 825	n:1790000
KS ci ratio: 4.228120e-03	ci left: 3.237304e-01	ci right 3.251026e-01	k: 580705	n:1790000
HTR6   1790000 perm   1493 sec   (1199 perm/sec)   p_kst 3.244162e-01   p_cons 4.608939e-04   p_joint 2.995531e-03

Joint ci ratio: 5.405833e-02	ci left: 2.834024e-03	ci right 2.992026e-03	k: 5242	n:1800000
Cons ci ratio: 1.361158e-01	ci left: 4.292038e-04	ci right 4.924215e-04	k: 828	n:1800000
KS ci ratio: 4.216237e-03	ci left: 3.237450e-01	ci right 3.251134e-01	k: 583972	n:1800000
HTR6   1800000 perm   1508 sec   (1194 perm/sec)   p_kst 3.244289e-01   p_cons 4.600000e-04   p_joint 2.912222e-03

Joint ci ratio: 5.404326e-02	ci left: 2.820001e-03	ci right 2.977176e-03	k: 5245	n:1810000
Cons ci ratio: 1.357887e-01	ci left: 4.289673e-04	ci right 4.919860e-04	k: 832	n:1810000
KS ci ratio: 4.204634e-03	ci left: 3.237406e-01	ci right 3.251052e-01	k: 587205	n:1810000
HTR6   1810000 perm   1523 sec   (1188 perm/sec)   p_kst 3.244227e-01   p_cons 4.596685e-04   p_joint 2.897790e-03

Joint ci ratio: 5.405919e-02	ci left: 2.802880e-03	ci right 2.959148e-03	k: 5242	n:1820000
Cons ci ratio: 1.355449e-01	ci left: 4.282027e-04	ci right 4.909871e-04	k: 835	n:1820000
KS ci ratio: 4.193257e-03	ci left: 3.237226e-01	ci right 3.250834e-01	k: 590413	n:1820000
HTR6   1820000 perm   1538 sec   (1183 perm/sec)   p_kst 3.244027e-01   p_cons 4.587912e-04   p_joint 2.880220e-03

Joint ci ratio: 4.836744e-02	ci left: 3.489984e-03	ci right 3.663505e-03	k: 6544	n:1830000
Cons ci ratio: 1.352218e-01	ci left: 4.279745e-04	ci right 4.905639e-04	k: 839	n:1830000
KS ci ratio: 4.007052e-03	ci left: 3.426967e-01	ci right 3.440732e-01	k: 628394	n:1830000
HTR6   1830000 perm   1553 sec   (1178 perm/sec)   p_kst 3.433847e-01   p_cons 4.584699e-04   p_joint 3.575956e-03

Joint ci ratio: 4.827916e-02	ci left: 3.483903e-03	ci right 3.656796e-03	k: 6568	n:1840000
Cons ci ratio: 1.349810e-01	ci left: 4.272239e-04	ci right 4.895833e-04	k: 842	n:1840000
KS ci ratio: 3.996095e-03	ci left: 3.427046e-01	ci right 3.440774e-01	k: 631839	n:1840000
HTR6   1840000 perm   1568 sec   (1173 perm/sec)   p_kst 3.433908e-01   p_cons 4.576087e-04   p_joint 3.569565e-03

Joint ci ratio: 4.811452e-02	ci left: 3.489102e-03	ci right 3.661647e-03	k: 6613	n:1850000
Cons ci ratio: 1.344240e-01	ci left: 4.285709e-04	ci right 4.908481e-04	k: 849	n:1850000
KS ci ratio: 3.985041e-03	ci left: 3.427336e-01	ci right 3.441026e-01	k: 635323	n:1850000
HTR6   1850000 perm   1584 sec   (1168 perm/sec)   p_kst 3.434178e-01   p_cons 4.589189e-04   p_joint 3.574595e-03

Joint ci ratio: 4.800947e-02	ci left: 3.485748e-03	ci right 3.657739e-03	k: 6642	n:1860000
Cons ci ratio: 1.341874e-01	ci left: 4.278254e-04	ci right 4.898762e-04	k: 852	n:1860000
KS ci ratio: 3.974301e-03	ci left: 3.427369e-01	ci right 3.441023e-01	k: 638760	n:1860000
HTR6   1860000 perm   1599 sec   (1163 perm/sec)   p_kst 3.434194e-01   p_cons 4.580645e-04   p_joint 3.570968e-03

Joint ci ratio: 4.787631e-02	ci left: 3.486656e-03	ci right 3.658202e-03	k: 6679	n:1870000
Cons ci ratio: 1.341090e-01	ci left: 4.260544e-04	ci right 4.878093e-04	k: 853	n:1870000
KS ci ratio: 3.963576e-03	ci left: 3.427483e-01	ci right 3.441100e-01	k: 642212	n:1870000
HTR6   1870000 perm   1615 sec   (1158 perm/sec)   p_kst 3.434289e-01   p_cons 4.561497e-04   p_joint 3.571658e-03

Joint ci ratio: 4.779426e-02	ci left: 3.480198e-03	ci right 3.651125e-03	k: 6702	n:1880000
Cons ci ratio: 1.337960e-01	ci left: 4.258445e-04	ci right 4.874135e-04	k: 857	n:1880000
KS ci ratio: 3.953088e-03	ci left: 3.427425e-01	ci right 3.441006e-01	k: 645632	n:1880000
HTR6   1880000 perm   1630 sec   (1153 perm/sec)   p_kst 3.434213e-01   p_cons 4.558511e-04   p_joint 3.564894e-03

Joint ci ratio: 4.766997e-02	ci left: 3.480081e-03	ci right 3.650546e-03	k: 6737	n:1890000
Cons ci ratio: 1.334078e-01	ci left: 4.261484e-04	ci right 4.875684e-04	k: 862	n:1890000
KS ci ratio: 3.942640e-03	ci left: 3.427415e-01	ci right 3.440960e-01	k: 649061	n:1890000
HTR6   1890000 perm   1646 sec   (1148 perm/sec)   p_kst 3.434185e-01   p_cons 4.560847e-04   p_joint 3.564550e-03

Joint ci ratio: 4.755018e-02	ci left: 3.479447e-03	ci right 3.649440e-03	k: 6771	n:1900000
Cons ci ratio: 1.330998e-01	ci left: 4.259406e-04	ci right 4.871777e-04	k: 866	n:1900000
KS ci ratio: 3.932096e-03	ci left: 3.427611e-01	ci right 3.441120e-01	k: 652529	n:1900000
HTR6   1900000 perm   1662 sec   (1143 perm/sec)   p_kst 3.434363e-01   p_cons 4.557895e-04   p_joint 3.563684e-03

Joint ci ratio: 4.739635e-02	ci left: 3.483993e-03	ci right 3.653643e-03	k: 6815	n:1910000
Cons ci ratio: 1.324898e-01	ci left: 4.277599e-04	ci right 4.889545e-04	k: 874	n:1910000
KS ci ratio: 3.921777e-03	ci left: 3.427642e-01	ci right 3.441116e-01	k: 655966	n:1910000
HTR6   1910000 perm   1678 sec   (1139 perm/sec)   p_kst 3.434377e-01   p_cons 4.575916e-04   p_joint 3.568063e-03

Joint ci ratio: 4.905688e-02	ci left: 3.233258e-03	ci right 3.396371e-03	k: 6363	n:1920000
Cons ci ratio: 1.319629e-01	ci left: 4.290573e-04	ci right 4.901742e-04	k: 881	n:1920000
KS ci ratio: 3.911670e-03	ci left: 3.427523e-01	ci right 3.440961e-01	k: 659374	n:1920000
HTR6   1920000 perm   1693 sec   (1134 perm/sec)   p_kst 3.434240e-01   p_cons 4.588542e-04   p_joint 3.314063e-03

Joint ci ratio: 4.893402e-02	ci left: 3.232883e-03	ci right 3.395556e-03	k: 6395	n:1930000
Cons ci ratio: 1.315904e-01	ci left: 4.293395e-04	ci right 4.903105e-04	k: 886	n:1930000
KS ci ratio: 3.901430e-03	ci left: 3.427648e-01	ci right 3.441051e-01	k: 662829	n:1930000
HTR6   1930000 perm   1709 sec   (1129 perm/sec)   p_kst 3.434347e-01   p_cons 4.590674e-04   p_joint 3.313472e-03

Joint ci ratio: 4.882733e-02	ci left: 3.230475e-03	ci right 3.392663e-03	k: 6423	n:1940000
Cons ci ratio: 1.312947e-01	ci left: 4.291204e-04	ci right 4.899127e-04	k: 890	n:1940000
KS ci ratio: 3.891443e-03	ci left: 3.427570e-01	ci right 3.440939e-01	k: 666245	n:1940000
HTR6   1940000 perm   1725 sec   (1125 perm/sec)   p_kst 3.434253e-01   p_cons 4.587629e-04   p_joint 3.310825e-03

Joint ci ratio: 4.669853e-02	ci left: 3.516420e-03	ci right 3.685060e-03	k: 7020	n:1950000
Cons ci ratio: 1.307819e-01	ci left: 4.303919e-04	ci right 4.911077e-04	k: 897	n:1950000
KS ci ratio: 3.881727e-03	ci left: 3.427268e-01	ci right 3.440603e-01	k: 669617	n:1950000
HTR6   1950000 perm   1741 sec   (1120 perm/sec)   p_kst 3.433933e-01   p_cons 4.600000e-04   p_joint 3.600000e-03

Joint ci ratio: 4.656933e-02	ci left: 3.518145e-03	ci right 3.686388e-03	k: 7059	n:1960000
Cons ci ratio: 1.307093e-01	ci left: 4.286895e-04	ci right 4.891289e-04	k: 898	n:1960000
KS ci ratio: 3.871571e-03	ci left: 3.427566e-01	ci right 3.440867e-01	k: 673106	n:1960000
HTR6   1960000 perm   1757 sec   (1115 perm/sec)   p_kst 3.434214e-01   p_cons 4.581633e-04   p_joint 3.601531e-03

Joint ci ratio: 4.819661e-02	ci left: 3.266028e-03	ci right 3.427824e-03	k: 6592	n:1970000
Cons ci ratio: 1.302752e-01	ci left: 4.294597e-04	ci right 4.897911e-04	k: 904	n:1970000
KS ci ratio: 3.861802e-03	ci left: 3.427501e-01	ci right 3.440768e-01	k: 676524	n:1970000
HTR6   1970000 perm   1773 sec   (1111 perm/sec)   p_kst 3.434132e-01   p_cons 4.588832e-04   p_joint 3.346193e-03

Joint ci ratio: 4.809101e-02	ci left: 3.264003e-03	ci right 3.425334e-03	k: 6621	n:1980000
Cons ci ratio: 1.300599e-01	ci left: 4.287565e-04	ci right 4.888819e-04	k: 907	n:1980000
KS ci ratio: 3.852065e-03	ci left: 3.427487e-01	ci right 3.440720e-01	k: 679952	n:1980000
HTR6   1980000 perm   1790 sec   (1106 perm/sec)   p_kst 3.434101e-01   p_cons 4.580808e-04   p_joint 3.343939e-03

Joint ci ratio: 4.819742e-02	ci left: 3.233202e-03	ci right 3.393374e-03	k: 6592	n:1990000
Cons ci ratio: 1.297744e-01	ci left: 4.285467e-04	ci right 4.885005e-04	k: 911	n:1990000
KS ci ratio: 3.842383e-03	ci left: 3.427493e-01	ci right 3.440693e-01	k: 683384	n:1990000
HTR6   1990000 perm   1806 sec   (1102 perm/sec)   p_kst 3.434090e-01   p_cons 4.577889e-04   p_joint 3.312563e-03

Joint ci ratio: 4.575858e-02	ci left: 3.572330e-03	ci right 3.740112e-03	k: 7311	n:2000000
Cons ci ratio: 1.294201e-01	ci left: 4.288229e-04	ci right 4.886390e-04	k: 916	n:2000000
KS ci ratio: 3.832714e-03	ci left: 3.427569e-01	ci right 3.440736e-01	k: 686830	n:2000000
HTR6   2000000 perm   1822 sec   (1098 perm/sec)   p_kst 3.434150e-01   p_cons 4.580000e-04   p_joint 3.655500e-03

Joint ci ratio: 4.562455e-02	ci left: 3.575706e-03	ci right 3.743142e-03	k: 7354	n:2010000
Cons ci ratio: 1.289289e-01	ci left: 4.300595e-04	ci right 4.898030e-04	k: 923	n:2010000
KS ci ratio: 3.823236e-03	ci left: 3.427505e-01	ci right 3.440639e-01	k: 690248	n:2010000
HTR6   2010000 perm   1839 sec   (1093 perm/sec)   p_kst 3.434070e-01   p_cons 4.592040e-04   p_joint 3.658706e-03

Joint ci ratio: 4.553495e-02	ci left: 3.572197e-03	ci right 3.739132e-03	k: 7383	n:2020000
Cons ci ratio: 1.287201e-01	ci left: 4.293678e-04	ci right 4.889113e-04	k: 926	n:2020000
KS ci ratio: 3.814076e-03	ci left: 3.427150e-01	ci right 3.440251e-01	k: 693607	n:2020000
HTR6   2020000 perm   1856 sec   (1088 perm/sec)   p_kst 3.433698e-01   p_cons 4.584158e-04   p_joint 3.654950e-03

Joint ci ratio: 4.540901e-02	ci left: 3.574568e-03	ci right 3.741139e-03	k: 7424	n:2030000
Cons ci ratio: 1.285816e-01	ci left: 4.282062e-04	ci right 4.875198e-04	k: 928	n:2030000
KS ci ratio: 3.804515e-03	ci left: 3.427350e-01	ci right 3.440418e-01	k: 697078	n:2030000
HTR6   2030000 perm   1873 sec   (1084 perm/sec)   p_kst 3.433882e-01   p_cons 4.571429e-04   p_joint 3.657143e-03

Joint ci ratio: 4.528715e-02	ci left: 3.576431e-03	ci right 3.742630e-03	k: 7464	n:2040000
Cons ci ratio: 1.284435e-01	ci left: 4.270560e-04	ci right 4.861419e-04	k: 930	n:2040000
KS ci ratio: 3.795137e-03	ci left: 3.427415e-01	ci right 3.440452e-01	k: 700522	n:2040000
HTR6   2040000 perm   1890 sec   (1080 perm/sec)   p_kst 3.433931e-01   p_cons 4.558824e-04   p_joint 3.658824e-03

Joint ci ratio: 4.568544e-02	ci left: 3.496770e-03	ci right 3.660735e-03	k: 7335	n:2050000
Cons ci ratio: 1.278270e-01	ci left: 4.292223e-04	ci right 4.883013e-04	k: 939	n:2050000
KS ci ratio: 3.785791e-03	ci left: 3.427524e-01	ci right 3.440529e-01	k: 703975	n:2050000
HTR6   2050000 perm   1907 sec   (1075 perm/sec)   p_kst 3.434024e-01   p_cons 4.580488e-04   p_joint 3.578049e-03

Joint ci ratio: 4.735724e-02	ci left: 3.236531e-03	ci right 3.393997e-03	k: 6828	n:2060000
Cons ci ratio: 1.278271e-01	ci left: 4.271387e-04	ci right 4.859310e-04	k: 939	n:2060000
KS ci ratio: 3.776607e-03	ci left: 3.427520e-01	ci right 3.440494e-01	k: 707405	n:2060000
HTR6   2060000 perm   1923 sec   (1071 perm/sec)   p_kst 3.434005e-01   p_cons 4.558252e-04   p_joint 3.314563e-03

Joint ci ratio: 4.722942e-02	ci left: 3.238558e-03	ci right 3.395686e-03	k: 6865	n:2070000
Cons ci ratio: 1.274885e-01	ci left: 4.274136e-04	ci right 4.860760e-04	k: 944	n:2070000
KS ci ratio: 3.767446e-03	ci left: 3.427570e-01	ci right 3.440512e-01	k: 710846	n:2070000
HTR6   2070000 perm   1940 sec   (1067 perm/sec)   p_kst 3.434039e-01   p_cons 4.560386e-04   p_joint 3.316425e-03

Joint ci ratio: 4.712318e-02	ci left: 3.237716e-03	ci right 3.394441e-03	k: 6896	n:2080000
Cons ci ratio: 1.272866e-01	ci left: 4.267550e-04	ci right 4.852274e-04	k: 947	n:2080000
KS ci ratio: 3.758034e-03	ci left: 3.427998e-01	ci right 3.440910e-01	k: 714366	n:2080000
HTR6   2080000 perm   1958 sec   (1063 perm/sec)   p_kst 3.434452e-01   p_cons 4.552885e-04   p_joint 3.315385e-03

Joint ci ratio: 4.702447e-02	ci left: 3.235937e-03	ci right 3.392238e-03	k: 6925	n:2090000
Cons ci ratio: 1.271527e-01	ci left: 4.256396e-04	ci right 4.838931e-04	k: 949	n:2090000
KS ci ratio: 3.748911e-03	ci left: 3.428160e-01	ci right 3.441041e-01	k: 717831	n:2090000
HTR6   2090000 perm   1975 sec   (1058 perm/sec)   p_kst 3.434598e-01   p_cons 4.540670e-04   p_joint 3.313397e-03

Joint ci ratio: 4.691623e-02	ci left: 3.235587e-03	ci right 3.391502e-03	k: 6957	n:2100000
Cons ci ratio: 1.270191e-01	ci left: 4.245348e-04	ci right 4.825715e-04	k: 951	n:2100000
KS ci ratio: 3.740143e-03	ci left: 3.427973e-01	ci right 3.440822e-01	k: 721223	n:2100000
HTR6   2100000 perm   1992 sec   (1054 perm/sec)   p_kst 3.434395e-01   p_cons 4.528571e-04   p_joint 3.312857e-03

Joint ci ratio: 4.680873e-02	ci left: 3.235241e-03	ci right 3.390772e-03	k: 6989	n:2110000
Cons ci ratio: 1.266868e-01	ci left: 4.248173e-04	ci right 4.827293e-04	k: 956	n:2110000
KS ci ratio: 3.731302e-03	ci left: 3.427948e-01	ci right 3.440767e-01	k: 724649	n:2110000
HTR6   2110000 perm   2009 sec   (1050 perm/sec)   p_kst 3.434355e-01   p_cons 4.530806e-04   p_joint 3.312322e-03

Joint ci ratio: 4.671531e-02	ci left: 3.233033e-03	ci right 3.388140e-03	k: 7017	n:2120000
Cons ci ratio: 1.264888e-01	ci left: 4.241837e-04	ci right 4.819121e-04	k: 959	n:2120000
KS ci ratio: 3.722228e-03	ci left: 3.428282e-01	ci right 3.441071e-01	k: 728151	n:2120000
HTR6   2120000 perm   2026 sec   (1046 perm/sec)   p_kst 3.434675e-01   p_cons 4.523585e-04   p_joint 3.309906e-03

Joint ci ratio: 4.660255e-02	ci left: 3.233631e-03	ci right 3.388382e-03	k: 7051	n:2130000
Cons ci ratio: 1.264231e-01	ci left: 4.226468e-04	ci right 4.801340e-04	k: 960	n:2130000
KS ci ratio: 3.713390e-03	ci left: 3.428407e-01	ci right 3.441166e-01	k: 731609	n:2130000
HTR6   2130000 perm   2045 sec   (1042 perm/sec)   p_kst 3.434784e-01   p_cons 4.507042e-04   p_joint 3.310329e-03

Joint ci ratio: 4.651036e-02	ci left: 3.231452e-03	ci right 3.385785e-03	k: 7079	n:2140000
Cons ci ratio: 1.260954e-01	ci left: 4.229345e-04	ci right 4.803006e-04	k: 965	n:2140000
KS ci ratio: 3.704895e-03	ci left: 3.428189e-01	ci right 3.440918e-01	k: 734994	n:2140000
HTR6   2140000 perm   2065 sec   (1036 perm/sec)   p_kst 3.434551e-01   p_cons 4.509346e-04   p_joint 3.307944e-03

Joint ci ratio: 4.645480e-02	ci left: 3.224237e-03	ci right 3.378036e-03	k: 7096	n:2150000
Cons ci ratio: 1.260303e-01	ci left: 4.214178e-04	ci right 4.785464e-04	k: 966	n:2150000
KS ci ratio: 3.696264e-03	ci left: 3.428211e-01	ci right 3.440910e-01	k: 738430	n:2150000
HTR6   2150000 perm   2085 sec   (1031 perm/sec)   p_kst 3.434558e-01   p_cons 4.493023e-04   p_joint 3.300465e-03

Joint ci ratio: 4.637981e-02	ci left: 3.219834e-03	ci right 3.373169e-03	k: 7119	n:2160000
Cons ci ratio: 1.259653e-01	ci left: 4.199152e-04	ci right 4.768085e-04	k: 967	n:2160000
KS ci ratio: 3.687756e-03	ci left: 3.428153e-01	ci right 3.440823e-01	k: 741849	n:2160000
HTR6   2160000 perm   2103 sec   (1027 perm/sec)   p_kst 3.434486e-01   p_cons 4.476852e-04   p_joint 3.295833e-03

Joint ci ratio: 4.629869e-02	ci left: 3.216384e-03	ci right 3.369279e-03	k: 7144	n:2170000
Cons ci ratio: 1.258355e-01	ci left: 4.188727e-04	ci right 4.755619e-04	k: 969	n:2170000
KS ci ratio: 3.679180e-03	ci left: 3.428253e-01	ci right 3.440894e-01	k: 745302	n:2170000
HTR6   2170000 perm   2121 sec   (1023 perm/sec)   p_kst 3.434571e-01   p_cons 4.465438e-04   p_joint 3.292166e-03

Joint ci ratio: 4.620829e-02	ci left: 3.214325e-03	ci right 3.366816e-03	k: 7172	n:2180000
Cons ci ratio: 1.255124e-01	ci left: 4.191727e-04	ci right 4.757461e-04	k: 974	n:2180000
KS ci ratio: 3.670641e-03	ci left: 3.428380e-01	ci right 3.440991e-01	k: 748761	n:2180000
HTR6   2180000 perm   2138 sec   (1019 perm/sec)   p_kst 3.434683e-01   p_cons 4.467890e-04   p_joint 3.289908e-03

Joint ci ratio: 4.609594e-02	ci left: 3.215445e-03	ci right 3.367608e-03	k: 7207	n:2190000
Cons ci ratio: 1.251918e-01	ci left: 4.194702e-04	ci right 4.759284e-04	k: 979	n:2190000
KS ci ratio: 3.662194e-03	ci left: 3.428464e-01	ci right 3.441047e-01	k: 752211	n:2190000
HTR6   2190000 perm   2157 sec   (1016 perm/sec)   p_kst 3.434753e-01   p_cons 4.470320e-04   p_joint 3.290868e-03

Joint ci ratio: 4.600672e-02	ci left: 3.213410e-03	ci right 3.365175e-03	k: 7235	n:2200000
Cons ci ratio: 1.248736e-01	ci left: 4.197652e-04	ci right 4.761088e-04	k: 984	n:2200000
KS ci ratio: 3.653654e-03	ci left: 3.428734e-01	ci right 3.441288e-01	k: 755702	n:2200000
HTR6   2200000 perm   2175 sec   (1012 perm/sec)   p_kst 3.435009e-01   p_cons 4.472727e-04   p_joint 3.288636e-03

Joint ci ratio: 4.588951e-02	ci left: 3.215419e-03	ci right 3.366882e-03	k: 7272	n:2210000
Cons ci ratio: 1.244950e-01	ci left: 4.204961e-04	ci right 4.767540e-04	k: 990	n:2210000
KS ci ratio: 3.645101e-03	ci left: 3.429092e-01	ci right 3.441618e-01	k: 759213	n:2210000
HTR6   2210000 perm   2193 sec   (1008 perm/sec)   p_kst 3.435353e-01   p_cons 4.479638e-04   p_joint 3.290498e-03

Joint ci ratio: 4.579204e-02	ci left: 3.214739e-03	ci right 3.365840e-03	k: 7303	n:2220000
Cons ci ratio: 1.242445e-01	ci left: 4.203477e-04	ci right 4.764643e-04	k: 994	n:2220000
KS ci ratio: 3.637126e-03	ci left: 3.428803e-01	ci right 3.441301e-01	k: 762581	n:2220000
HTR6   2220000 perm   2211 sec   (1004 perm/sec)   p_kst 3.435050e-01   p_cons 4.477477e-04   p_joint 3.289640e-03

Joint ci ratio: 4.568582e-02	ci left: 3.215396e-03	ci right 3.366168e-03	k: 7337	n:2230000
Cons ci ratio: 1.239335e-01	ci left: 4.206353e-04	ci right 4.766394e-04	k: 999	n:2230000
KS ci ratio: 3.628912e-03	ci left: 3.428879e-01	ci right 3.441349e-01	k: 766030	n:2230000
HTR6   2230000 perm   2229 sec   (1000 perm/sec)   p_kst 3.435112e-01   p_cons 4.479821e-04   p_joint 3.290135e-03

Joint ci ratio: 4.556483e-02	ci left: 3.218254e-03	ci right 3.368749e-03	k: 7376	n:2240000
Cons ci ratio: 1.236248e-01	ci left: 4.209205e-04	ci right 4.768128e-04	k: 1004	n:2240000
KS ci ratio: 3.620720e-03	ci left: 3.428995e-01	ci right 3.441437e-01	k: 769488	n:2240000
HTR6   2240000 perm   2247 sec   (997 perm/sec)   p_kst 3.435214e-01   p_cons 4.482143e-04   p_joint 3.292857e-03

Joint ci ratio: 4.545095e-02	ci left: 3.220208e-03	ci right 3.370408e-03	k: 7413	n:2250000
Cons ci ratio: 1.234407e-01	ci left: 4.203418e-04	ci right 4.760681e-04	k: 1007	n:2250000
KS ci ratio: 3.613101e-03	ci left: 3.428466e-01	ci right 3.440880e-01	k: 772801	n:2250000
HTR6   2250000 perm   2265 sec   (993 perm/sec)   p_kst 3.434671e-01   p_cons 4.475556e-04   p_joint 3.294667e-03

Joint ci ratio: 4.535930e-02	ci left: 3.219083e-03	ci right 3.368920e-03	k: 7443	n:2260000
Cons ci ratio: 1.231965e-01	ci left: 4.201972e-04	ci right 4.757861e-04	k: 1011	n:2260000
KS ci ratio: 3.605359e-03	ci left: 3.428154e-01	ci right 3.440540e-01	k: 776162	n:2260000
HTR6   2260000 perm   2284 sec   (990 perm/sec)   p_kst 3.434345e-01   p_cons 4.473451e-04   p_joint 3.293363e-03

Joint ci ratio: 4.522573e-02	ci left: 3.224066e-03	ci right 3.373682e-03	k: 7487	n:2270000
Cons ci ratio: 1.227124e-01	ci left: 4.217620e-04	ci right 4.773227e-04	k: 1019	n:2270000
KS ci ratio: 3.597603e-03	ci left: 3.427924e-01	ci right 3.440283e-01	k: 779541	n:2270000
HTR6   2270000 perm   2303 sec   (986 perm/sec)   p_kst 3.434101e-01   p_cons 4.488987e-04   p_joint 3.298238e-03

Joint ci ratio: 4.513845e-02	ci left: 3.222501e-03	ci right 3.371748e-03	k: 7516	n:2280000
Cons ci ratio: 1.225323e-01	ci left: 4.211876e-04	ci right 4.765853e-04	k: 1022	n:2280000
KS ci ratio: 3.589908e-03	ci left: 3.427683e-01	ci right 3.440014e-01	k: 782917	n:2280000
HTR6   2280000 perm   2321 sec   (982 perm/sec)   p_kst 3.433846e-01   p_cons 4.482456e-04   p_joint 3.296491e-03

Joint ci ratio: 4.506365e-02	ci left: 3.219222e-03	ci right 3.368064e-03	k: 7541	n:2290000
Cons ci ratio: 1.223531e-01	ci left: 4.206182e-04	ci right 4.758543e-04	k: 1025	n:2290000
KS ci ratio: 3.581887e-03	ci left: 3.427915e-01	ci right 3.440220e-01	k: 786401	n:2290000
HTR6   2290000 perm   2340 sec   (979 perm/sec)   p_kst 3.434066e-01   p_cons 4.475983e-04   p_joint 3.293013e-03

Joint ci ratio: 4.509097e-02	ci left: 3.201356e-03	ci right 3.349464e-03	k: 7532	n:2300000
Cons ci ratio: 1.221153e-01	ci left: 4.204754e-04	ci right 4.755777e-04	k: 1029	n:2300000
KS ci ratio: 3.574230e-03	ci left: 3.427754e-01	ci right 3.440032e-01	k: 789795	n:2300000
HTR6   2300000 perm   2358 sec   (975 perm/sec)   p_kst 3.433891e-01   p_cons 4.473913e-04   p_joint 3.274783e-03

Joint ci ratio: 4.501343e-02	ci left: 3.198626e-03	ci right 3.346347e-03	k: 7558	n:2310000
Cons ci ratio: 1.220562e-01	ci left: 4.190748e-04	ci right 4.739650e-04	k: 1030	n:2310000
KS ci ratio: 3.566577e-03	ci left: 3.427651e-01	ci right 3.439902e-01	k: 793202	n:2310000
HTR6   2310000 perm   2377 sec   (972 perm/sec)   p_kst 3.433775e-01   p_cons 4.458874e-04   p_joint 3.271861e-03

Joint ci ratio: 4.493033e-02	ci left: 3.196772e-03	ci right 3.344127e-03	k: 7586	n:2320000
Cons ci ratio: 1.218790e-01	ci left: 4.185221e-04	ci right 4.732546e-04	k: 1033	n:2320000
KS ci ratio: 3.558956e-03	ci left: 3.427571e-01	ci right 3.439795e-01	k: 796614	n:2320000
HTR6   2320000 perm   2396 sec   (968 perm/sec)   p_kst 3.433681e-01   p_cons 4.452586e-04   p_joint 3.269828e-03

Joint ci ratio: 4.483293e-02	ci left: 3.197056e-03	ci right 3.344097e-03	k: 7619	n:2330000
Cons ci ratio: 1.215269e-01	ci left: 4.192226e-04	ci right 4.738769e-04	k: 1039	n:2330000
KS ci ratio: 3.551246e-03	ci left: 3.427667e-01	ci right 3.439865e-01	k: 800067	n:2330000
HTR6   2330000 perm   2418 sec   (964 perm/sec)   p_kst 3.433764e-01   p_cons 4.459227e-04   p_joint 3.269957e-03

Joint ci ratio: 4.473910e-02	ci left: 3.196915e-03	ci right 3.343634e-03	k: 7651	n:2340000
Cons ci ratio: 1.212358e-01	ci left: 4.195030e-04	ci right 4.740534e-04	k: 1044	n:2340000
KS ci ratio: 3.543780e-03	ci left: 3.427514e-01	ci right 3.439686e-01	k: 803462	n:2340000
HTR6   2340000 perm   2440 sec   (959 perm/sec)   p_kst 3.433598e-01   p_cons 4.461538e-04   p_joint 3.269658e-03

Joint ci ratio: 4.466627e-02	ci left: 3.193831e-03	ci right 3.340163e-03	k: 7676	n:2350000
Cons ci ratio: 1.208317e-01	ci left: 4.206064e-04	ci right 4.751050e-04	k: 1051	n:2350000
KS ci ratio: 3.536320e-03	ci left: 3.427414e-01	ci right 3.439560e-01	k: 806869	n:2350000
HTR6   2350000 perm   2462 sec   (955 perm/sec)   p_kst 3.433485e-01   p_cons 4.472340e-04   p_joint 3.266383e-03

Joint ci ratio: 4.457057e-02	ci left: 3.194125e-03	ci right 3.340149e-03	k: 7709	n:2360000
Cons ci ratio: 1.204316e-01	ci left: 4.217008e-04	ci right 4.761474e-04	k: 1058	n:2360000
KS ci ratio: 3.528845e-03	ci left: 3.427395e-01	ci right 3.439515e-01	k: 810295	n:2360000
HTR6   2360000 perm   2484 sec   (950 perm/sec)   p_kst 3.433453e-01   p_cons 4.483051e-04   p_joint 3.266525e-03

Joint ci ratio: 4.447837e-02	ci left: 3.193999e-03	ci right 3.339708e-03	k: 7741	n:2370000
Cons ci ratio: 1.203181e-01	ci left: 4.207399e-04	ci right 4.750076e-04	k: 1060	n:2370000
KS ci ratio: 3.521289e-03	ci left: 3.427541e-01	ci right 3.439636e-01	k: 813760	n:2370000
HTR6   2370000 perm   2505 sec   (946 perm/sec)   p_kst 3.433586e-01   p_cons 4.472574e-04   p_joint 3.266245e-03

Joint ci ratio: 4.437815e-02	ci left: 3.195122e-03	ci right 3.340545e-03	k: 7776	n:2380000
Cons ci ratio: 1.200356e-01	ci left: 4.210098e-04	ci right 4.751758e-04	k: 1065	n:2380000
KS ci ratio: 3.513731e-03	ci left: 3.427749e-01	ci right 3.439818e-01	k: 817240	n:2380000
HTR6   2380000 perm   2526 sec   (942 perm/sec)   p_kst 3.433782e-01   p_cons 4.474790e-04   p_joint 3.267227e-03

Joint ci ratio: 4.436987e-02	ci left: 3.182994e-03	ci right 3.327837e-03	k: 7779	n:2390000
Cons ci ratio: 1.199794e-01	ci left: 4.196541e-04	ci right 4.736186e-04	k: 1066	n:2390000
KS ci ratio: 3.506375e-03	ci left: 3.427758e-01	ci right 3.439802e-01	k: 820673	n:2390000
HTR6   2390000 perm   2545 sec   (939 perm/sec)   p_kst 3.433778e-01   p_cons 4.460251e-04   p_joint 3.254812e-03

Joint ci ratio: 4.427891e-02	ci left: 3.182917e-03	ci right 3.327452e-03	k: 7811	n:2400000
Cons ci ratio: 1.198112e-01	ci left: 4.191180e-04	ci right 4.729326e-04	k: 1069	n:2400000
KS ci ratio: 3.498932e-03	ci left: 3.427938e-01	ci right 3.439957e-01	k: 824147	n:2400000
HTR6   2400000 perm   2565 sec   (936 perm/sec)   p_kst 3.433946e-01   p_cons 4.454167e-04   p_joint 3.254583e-03

Joint ci ratio: 4.418285e-02	ci left: 3.183662e-03	ci right 3.327909e-03	k: 7845	n:2410000
Cons ci ratio: 1.197553e-01	ci left: 4.177814e-04	ci right 4.713976e-04	k: 1070	n:2410000
KS ci ratio: 3.491756e-03	ci left: 3.427835e-01	ci right 3.439829e-01	k: 827553	n:2410000
HTR6   2410000 perm   2585 sec   (932 perm/sec)   p_kst 3.433830e-01   p_cons 4.439834e-04   p_joint 3.255187e-03

Joint ci ratio: 4.409303e-02	ci left: 3.183583e-03	ci right 3.327527e-03	k: 7877	n:2420000
Cons ci ratio: 1.194767e-01	ci left: 4.180594e-04	ci right 4.715776e-04	k: 1075	n:2420000
KS ci ratio: 3.484466e-03	ci left: 3.427935e-01	ci right 3.439904e-01	k: 831008	n:2420000
HTR6   2420000 perm   2605 sec   (929 perm/sec)   p_kst 3.433917e-01   p_cons 4.442149e-04   p_joint 3.254959e-03

Joint ci ratio: 4.409613e-02	ci left: 3.170075e-03	ci right 3.313418e-03	k: 7876	n:2430000
Cons ci ratio: 1.193105e-01	ci left: 4.175366e-04	ci right 4.709084e-04	k: 1078	n:2430000
KS ci ratio: 3.477162e-03	ci left: 3.428112e-01	ci right 3.440057e-01	k: 834482	n:2430000
HTR6   2430000 perm   2624 sec   (926 perm/sec)   p_kst 3.434082e-01   p_cons 4.436214e-04   p_joint 3.241152e-03

Joint ci ratio: 4.401801e-02	ci left: 3.168431e-03	ci right 3.311440e-03	k: 7904	n:2440000
Cons ci ratio: 1.190900e-01	ci left: 4.174159e-04	ci right 4.706666e-04	k: 1082	n:2440000
KS ci ratio: 3.469843e-03	ci left: 3.428365e-01	ci right 3.440286e-01	k: 837975	n:2440000
HTR6   2440000 perm   2644 sec   (923 perm/sec)   p_kst 3.434324e-01   p_cons 4.434426e-04   p_joint 3.239344e-03

Joint ci ratio: 4.393196e-02	ci left: 3.168013e-03	ci right 3.310716e-03	k: 7935	n:2450000
Cons ci ratio: 1.185981e-01	ci left: 4.192764e-04	ci right 4.725281e-04	k: 1091	n:2450000
KS ci ratio: 3.462562e-03	ci left: 3.428629e-01	ci right 3.440526e-01	k: 841471	n:2450000
HTR6   2450000 perm   2664 sec   (920 perm/sec)   p_kst 3.434576e-01   p_cons 4.453061e-04   p_joint 3.238776e-03

Joint ci ratio: 4.382711e-02	ci left: 3.170413e-03	ci right 3.312874e-03	k: 7973	n:2460000
Cons ci ratio: 1.182736e-01	ci left: 4.199388e-04	ci right 4.731185e-04	k: 1097	n:2460000
KS ci ratio: 3.455593e-03	ci left: 3.428541e-01	ci right 3.440413e-01	k: 844881	n:2460000
HTR6   2460000 perm   2684 sec   (916 perm/sec)   p_kst 3.434476e-01   p_cons 4.459350e-04   p_joint 3.241057e-03

Joint ci ratio: 4.374766e-02	ci left: 3.169189e-03	ci right 3.311332e-03	k: 8002	n:2470000
Cons ci ratio: 1.180052e-01	ci left: 4.202032e-04	ci right 4.732872e-04	k: 1102	n:2470000
KS ci ratio: 3.448370e-03	ci left: 3.428843e-01	ci right 3.440691e-01	k: 848387	n:2470000
HTR6   2470000 perm   2705 sec   (913 perm/sec)   p_kst 3.434765e-01   p_cons 4.461538e-04   p_joint 3.239676e-03

Joint ci ratio: 4.576855e-02	ci left: 2.881685e-03	ci right 3.017060e-03	k: 7313	n:2480000
Cons ci ratio: 1.176325e-01	ci left: 4.212482e-04	ci right 4.742845e-04	k: 1109	n:2480000
KS ci ratio: 3.441671e-03	ci left: 3.428513e-01	ci right 3.440337e-01	k: 851737	n:2480000
HTR6   2480000 perm   2725 sec   (910 perm/sec)   p_kst 3.434423e-01   p_cons 4.471774e-04   p_joint 2.948790e-03

Joint ci ratio: 4.569057e-02	ci left: 2.880038e-03	ci right 3.015098e-03	k: 7338	n:2490000
Cons ci ratio: 1.174739e-01	ci left: 4.207258e-04	ci right 4.736199e-04	k: 1112	n:2490000
KS ci ratio: 3.434984e-03	ci left: 3.428222e-01	ci right 3.440022e-01	k: 855096	n:2490000
HTR6   2490000 perm   2748 sec   (906 perm/sec)   p_kst 3.434120e-01   p_cons 4.465863e-04   p_joint 2.946988e-03

Joint ci ratio: 4.565654e-02	ci left: 2.872867e-03	ci right 3.007489e-03	k: 7349	n:2500000
Cons ci ratio: 1.172109e-01	ci left: 4.209842e-04	ci right 4.737841e-04	k: 1117	n:2500000
KS ci ratio: 3.428065e-03	ci left: 3.428290e-01	ci right 3.440066e-01	k: 858544	n:2500000
HTR6   2500000 perm   2769 sec   (903 perm/sec)   p_kst 3.434176e-01   p_cons 4.468000e-04   p_joint 2.939600e-03

Joint ci ratio: 4.554817e-02	ci left: 2.875207e-03	ci right 3.009610e-03	k: 7384	n:2510000
Cons ci ratio: 1.168976e-01	ci left: 4.216275e-04	ci right 4.743569e-04	k: 1123	n:2510000
KS ci ratio: 3.421118e-03	ci left: 3.428448e-01	ci right 3.440201e-01	k: 862015	n:2510000
HTR6   2510000 perm   2792 sec   (899 perm/sec)   p_kst 3.434323e-01   p_cons 4.474104e-04   p_joint 2.941833e-03

Joint ci ratio: 4.547438e-02	ci left: 2.873212e-03	ci right 3.007299e-03	k: 7408	n:2520000
Cons ci ratio: 1.167419e-01	ci left: 4.211100e-04	ci right 4.736998e-04	k: 1126	n:2520000
KS ci ratio: 3.413991e-03	ci left: 3.428899e-01	ci right 3.440629e-01	k: 865560	n:2520000
HTR6   2520000 perm   2832 sec   (890 perm/sec)   p_kst 3.434762e-01   p_cons 4.468254e-04   p_joint 2.939683e-03

Joint ci ratio: 4.537647e-02	ci left: 2.874360e-03	ci right 3.008204e-03	k: 7440	n:2530000
Cons ci ratio: 1.164838e-01	ci left: 4.213642e-04	ci right 4.738614e-04	k: 1131	n:2530000
KS ci ratio: 3.407278e-03	ci left: 3.428856e-01	ci right 3.440563e-01	k: 868981	n:2530000
HTR6   2530000 perm   2870 sec   (882 perm/sec)   p_kst 3.434708e-01   p_cons 4.470356e-04   p_joint 2.940711e-03

Joint ci ratio: 4.530961e-02	ci left: 2.871607e-03	ci right 3.005121e-03	k: 7462	n:2540000
Cons ci ratio: 1.163298e-01	ci left: 4.208520e-04	ci right 4.732113e-04	k: 1134	n:2540000
KS ci ratio: 3.400489e-03	ci left: 3.428967e-01	ci right 3.440651e-01	k: 872441	n:2540000
HTR6   2540000 perm   2893 sec   (878 perm/sec)   p_kst 3.434807e-01   p_cons 4.464567e-04   p_joint 2.937795e-03

Joint ci ratio: 4.523698e-02	ci left: 2.869651e-03	ci right 3.002854e-03	k: 7486	n:2550000
Cons ci ratio: 1.162787e-01	ci left: 4.195823e-04	ci right 4.717591e-04	k: 1135	n:2550000
KS ci ratio: 3.393909e-03	ci left: 3.428854e-01	ci right 3.440514e-01	k: 875844	n:2550000
HTR6   2550000 perm   2914 sec   (875 perm/sec)   p_kst 3.434682e-01   p_cons 4.450980e-04   p_joint 2.935686e-03

Joint ci ratio: 4.514962e-02	ci left: 2.869642e-03	ci right 3.002580e-03	k: 7515	n:2560000
Cons ci ratio: 1.158713e-01	ci left: 4.209776e-04	ci right 4.731320e-04	k: 1143	n:2560000
KS ci ratio: 3.387076e-03	ci left: 3.429128e-01	ci right 3.440766e-01	k: 879346	n:2560000
HTR6   2560000 perm   2934 sec   (872 perm/sec)   p_kst 3.434945e-01   p_cons 4.464844e-04   p_joint 2.935547e-03

Joint ci ratio: 4.504781e-02	ci left: 2.871556e-03	ci right 3.004276e-03	k: 7549	n:2570000
Cons ci ratio: 1.157197e-01	ci left: 4.204731e-04	ci right 4.724921e-04	k: 1146	n:2570000
KS ci ratio: 3.380547e-03	ci left: 3.429050e-01	ci right 3.440665e-01	k: 882758	n:2570000
HTR6   2570000 perm   2973 sec   (864 perm/sec)   p_kst 3.434856e-01   p_cons 4.459144e-04   p_joint 2.937354e-03

Joint ci ratio: 4.535333e-02	ci left: 2.821720e-03	ci right 2.953043e-03	k: 7448	n:2580000
Cons ci ratio: 1.154182e-01	ci left: 4.211017e-04	ci right 4.730535e-04	k: 1152	n:2580000
KS ci ratio: 3.373806e-03	ci left: 3.429306e-01	ci right 3.440899e-01	k: 886256	n:2580000
HTR6   2580000 perm   3017 sec   (855 perm/sec)   p_kst 3.435101e-01   p_cons 4.465116e-04   p_joint 2.886822e-03

Joint ci ratio: 4.524710e-02	ci left: 2.824186e-03	ci right 2.955308e-03	k: 7483	n:2590000
Cons ci ratio: 1.151190e-01	ci left: 4.217256e-04	ci right 4.736104e-04	k: 1158	n:2590000
KS ci ratio: 3.367065e-03	ci left: 3.429614e-01	ci right 3.441185e-01	k: 889768	n:2590000
HTR6   2590000 perm   3047 sec   (850 perm/sec)   p_kst 3.435398e-01   p_cons 4.471042e-04   p_joint 2.889189e-03

Joint ci ratio: 4.515667e-02	ci left: 2.824731e-03	ci right 2.955610e-03	k: 7513	n:2600000
Cons ci ratio: 1.148715e-01	ci left: 4.219714e-04	ci right 4.737672e-04	k: 1163	n:2600000
KS ci ratio: 3.360897e-03	ci left: 3.429205e-01	ci right 3.440753e-01	k: 893094	n:2600000
HTR6   2600000 perm   3068 sec   (847 perm/sec)   p_kst 3.434977e-01   p_cons 4.473077e-04   p_joint 2.889615e-03

Joint ci ratio: 4.509377e-02	ci left: 2.821864e-03	ci right 2.952423e-03	k: 7534	n:2610000
Cons ci ratio: 1.146256e-01	ci left: 4.222154e-04	ci right 4.739227e-04	k: 1168	n:2610000
KS ci ratio: 3.354701e-03	ci left: 3.428883e-01	ci right 3.440408e-01	k: 896442	n:2610000
HTR6   2610000 perm   3090 sec   (845 perm/sec)   p_kst 3.434644e-01   p_cons 4.475096e-04   p_joint 2.886590e-03

Joint ci ratio: 4.499531e-02	ci left: 2.823547e-03	ci right 2.953892e-03	k: 7567	n:2620000
Cons ci ratio: 1.142353e-01	ci left: 4.235699e-04	ci right 4.752546e-04	k: 1176	n:2620000
KS ci ratio: 3.348422e-03	ci left: 3.428719e-01	ci right 3.440223e-01	k: 899831	n:2620000
HTR6   2620000 perm   3111 sec   (842 perm/sec)   p_kst 3.434469e-01   p_cons 4.488550e-04   p_joint 2.888168e-03

Joint ci ratio: 4.490639e-02	ci left: 2.824090e-03	ci right 2.954195e-03	k: 7597	n:2630000
Cons ci ratio: 1.140417e-01	ci left: 4.234369e-04	ci right 4.750118e-04	k: 1180	n:2630000
KS ci ratio: 3.341868e-03	ci left: 3.428976e-01	ci right 3.440458e-01	k: 903330	n:2630000
HTR6   2630000 perm   3133 sec   (840 perm/sec)   p_kst 3.434715e-01   p_cons 4.486692e-04   p_joint 2.888593e-03

Joint ci ratio: 4.482388e-02	ci left: 2.823879e-03	ci right 2.953730e-03	k: 7625	n:2640000
Cons ci ratio: 1.138971e-01	ci left: 4.229369e-04	ci right 4.743813e-04	k: 1183	n:2640000
KS ci ratio: 3.335311e-03	ci left: 3.429287e-01	ci right 3.440747e-01	k: 906844	n:2640000
HTR6   2640000 perm   3154 sec   (837 perm/sec)   p_kst 3.435015e-01   p_cons 4.481061e-04   p_joint 2.888258e-03

Joint ci ratio: 4.472424e-02	ci left: 2.825910e-03	ci right 2.955558e-03	k: 7659	n:2650000
Cons ci ratio: 1.137531e-01	ci left: 4.224408e-04	ci right 4.737555e-04	k: 1186	n:2650000
KS ci ratio: 3.328806e-03	ci left: 3.429577e-01	ci right 3.441016e-01	k: 910353	n:2650000
HTR6   2650000 perm   3177 sec   (834 perm/sec)   p_kst 3.435294e-01   p_cons 4.475472e-04   p_joint 2.890189e-03

Joint ci ratio: 4.480669e-02	ci left: 2.804877e-03	ci right 2.933803e-03	k: 7631	n:2660000
Cons ci ratio: 1.134667e-01	ci left: 4.230442e-04	ci right 4.742941e-04	k: 1192	n:2660000
KS ci ratio: 3.322466e-03	ci left: 3.429691e-01	ci right 3.441109e-01	k: 913816	n:2660000
HTR6   2660000 perm   3199 sec   (831 perm/sec)   p_kst 3.435398e-01   p_cons 4.481203e-04   p_joint 2.868797e-03

Joint ci ratio: 4.473938e-02	ci left: 2.802890e-03	ci right 2.931526e-03	k: 7654	n:2670000
Cons ci ratio: 1.134668e-01	ci left: 4.214597e-04	ci right 4.725178e-04	k: 1192	n:2670000
KS ci ratio: 3.316079e-03	ci left: 3.429918e-01	ci right 3.441314e-01	k: 917309	n:2670000
HTR6   2670000 perm   3221 sec   (829 perm/sec)   p_kst 3.435614e-01   p_cons 4.464419e-04   p_joint 2.866667e-03

Joint ci ratio: 4.465195e-02	ci left: 2.803500e-03	ci right 2.931906e-03	k: 7684	n:2680000
Cons ci ratio: 1.133244e-01	ci left: 4.209748e-04	ci right 4.719058e-04	k: 1195	n:2680000
KS ci ratio: 3.309897e-03	ci left: 3.429915e-01	ci right 3.441290e-01	k: 920741	n:2680000
HTR6   2680000 perm   3258 sec   (823 perm/sec)   p_kst 3.435601e-01   p_cons 4.458955e-04   p_joint 2.867164e-03

Joint ci ratio: 4.468720e-02	ci left: 2.788666e-03	ci right 2.916497e-03	k: 7672	n:2690000
Cons ci ratio: 1.132298e-01	ci left: 4.201322e-04	ci right 4.709161e-04	k: 1197	n:2690000
KS ci ratio: 3.303697e-03	ci left: 3.429983e-01	ci right 3.441337e-01	k: 924192	n:2690000
HTR6   2690000 perm   3300 sec   (815 perm/sec)   p_kst 3.435658e-01   p_cons 4.449814e-04   p_joint 2.852045e-03

Joint ci ratio: 4.457977e-02	ci left: 2.791889e-03	ci right 2.919551e-03	k: 7709	n:2700000
Cons ci ratio: 1.131827e-01	ci left: 4.189360e-04	ci right 4.695528e-04	k: 1198	n:2700000
KS ci ratio: 3.297545e-03	ci left: 3.430032e-01	ci right 3.441364e-01	k: 927638	n:2700000
HTR6   2700000 perm   3322 sec   (813 perm/sec)   p_kst 3.435696e-01   p_cons 4.437037e-04   p_joint 2.855185e-03

Joint ci ratio: 4.451636e-02	ci left: 2.789614e-03	ci right 2.916987e-03	k: 7731	n:2710000
Cons ci ratio: 1.128537e-01	ci left: 4.199002e-04	ci right 4.704761e-04	k: 1205	n:2710000
KS ci ratio: 3.291498e-03	ci left: 3.429984e-01	ci right 3.441296e-01	k: 931058	n:2710000
HTR6   2710000 perm   3344 sec   (810 perm/sec)   p_kst 3.435638e-01   p_cons 4.446494e-04   p_joint 2.852768e-03

Joint ci ratio: 4.441876e-02	ci left: 2.791720e-03	ci right 2.918901e-03	k: 7765	n:2720000
Cons ci ratio: 1.123886e-01	ci left: 4.219294e-04	ci right 4.725264e-04	k: 1215	n:2720000
KS ci ratio: 3.285401e-03	ci left: 3.430051e-01	ci right 3.441342e-01	k: 934509	n:2720000
HTR6   2720000 perm   3366 sec   (808 perm/sec)   p_kst 3.435695e-01   p_cons 4.466912e-04   p_joint 2.854779e-03

Joint ci ratio: 4.236471e-02	ci left: 3.060133e-03	ci right 3.192939e-03	k: 8534	n:2730000
Cons ci ratio: 1.121582e-01	ci left: 4.221639e-04	ci right 4.726785e-04	k: 1220	n:2730000
KS ci ratio: 3.279526e-03	ci left: 3.429857e-01	ci right 3.441128e-01	k: 937889	n:2730000
HTR6   2730000 perm   3388 sec   (806 perm/sec)   p_kst 3.435491e-01   p_cons 4.468864e-04   p_joint 3.126007e-03

Joint ci ratio: 4.236745e-02	ci left: 3.048603e-03	ci right 3.180918e-03	k: 8533	n:2740000
Cons ci ratio: 1.118380e-01	ci left: 4.231064e-04	ci right 4.735796e-04	k: 1227	n:2740000
KS ci ratio: 3.273469e-03	ci left: 3.429961e-01	ci right 3.441210e-01	k: 941350	n:2740000
HTR6   2740000 perm   3435 sec   (798 perm/sec)   p_kst 3.435584e-01   p_cons 4.478102e-04   p_joint 3.114234e-03

Joint ci ratio: 4.230309e-02	ci left: 3.046872e-03	ci right 3.178906e-03	k: 8559	n:2750000
Cons ci ratio: 1.116110e-01	ci left: 4.233352e-04	ci right 4.737265e-04	k: 1232	n:2750000
KS ci ratio: 3.267632e-03	ci left: 3.429805e-01	ci right 3.441034e-01	k: 944740	n:2750000
HTR6   2750000 perm   3494 sec   (787 perm/sec)   p_kst 3.435418e-01   p_cons 4.480000e-04   p_joint 3.112364e-03

Joint ci ratio: 4.222917e-02	ci left: 3.046587e-03	ci right 3.178372e-03	k: 8589	n:2760000
Cons ci ratio: 1.114304e-01	ci left: 4.232102e-04	ci right 4.734998e-04	k: 1236	n:2760000
KS ci ratio: 3.261936e-03	ci left: 3.429499e-01	ci right 3.440707e-01	k: 948088	n:2760000
HTR6   2760000 perm   3540 sec   (780 perm/sec)   p_kst 3.435101e-01   p_cons 4.478261e-04   p_joint 3.111957e-03

Joint ci ratio: 4.257635e-02	ci left: 2.985938e-03	ci right 3.116188e-03	k: 8450	n:2770000
Cons ci ratio: 1.110718e-01	ci left: 4.244901e-04	ci right 4.747588e-04	k: 1244	n:2770000
KS ci ratio: 3.255873e-03	ci left: 3.429743e-01	ci right 3.440932e-01	k: 951588	n:2770000
HTR6   2770000 perm   3575 sec   (775 perm/sec)   p_kst 3.435336e-01   p_cons 4.490975e-04   p_joint 3.050542e-03

Joint ci ratio: 4.254378e-02	ci left: 2.979823e-03	ci right 3.109704e-03	k: 8463	n:2780000
Cons ci ratio: 1.108051e-01	ci left: 4.250615e-04	ci right 4.752691e-04	k: 1250	n:2780000
KS ci ratio: 3.250047e-03	ci left: 3.429705e-01	ci right 3.440874e-01	k: 955010	n:2780000
HTR6   2780000 perm   3597 sec   (773 perm/sec)   p_kst 3.435288e-01   p_cons 4.496403e-04   p_joint 3.044245e-03

Joint ci ratio: 4.247862e-02	ci left: 2.978363e-03	ci right 3.107977e-03	k: 8489	n:2790000
Cons ci ratio: 1.106283e-01	ci left: 4.249320e-04	ci right 4.750390e-04	k: 1254	n:2790000
KS ci ratio: 3.244073e-03	ci left: 3.429915e-01	ci right 3.441063e-01	k: 958501	n:2790000
HTR6   2790000 perm   3620 sec   (771 perm/sec)   p_kst 3.435487e-01   p_cons 4.494624e-04   p_joint 3.042652e-03

Joint ci ratio: 4.237883e-02	ci left: 2.981860e-03	ci right 3.111314e-03	k: 8529	n:2800000
Cons ci ratio: 1.103648e-01	ci left: 4.254980e-04	ci right 4.755445e-04	k: 1260	n:2800000
KS ci ratio: 3.238420e-03	ci left: 3.429723e-01	ci right 3.440851e-01	k: 961880	n:2800000
HTR6   2800000 perm   3642 sec   (769 perm/sec)   p_kst 3.435286e-01   p_cons 4.500000e-04   p_joint 3.046071e-03

Joint ci ratio: 4.240899e-02	ci left: 2.967023e-03	ci right 3.095926e-03	k: 8517	n:2810000
Cons ci ratio: 1.101032e-01	ci left: 4.260602e-04	ci right 4.760463e-04	k: 1266	n:2810000
KS ci ratio: 3.232682e-03	ci left: 3.429693e-01	ci right 3.440801e-01	k: 965304	n:2810000
HTR6   2810000 perm   3664 sec   (767 perm/sec)   p_kst 3.435246e-01   p_cons 4.505338e-04   p_joint 3.030961e-03

Joint ci ratio: 4.234196e-02	ci left: 2.965975e-03	ci right 3.094624e-03	k: 8544	n:2820000
Cons ci ratio: 1.101032e-01	ci left: 4.245493e-04	ci right 4.743582e-04	k: 1266	n:2820000
KS ci ratio: 3.227077e-03	ci left: 3.429518e-01	ci right 3.440606e-01	k: 968687	n:2820000
HTR6   2820000 perm   3715 sec   (759 perm/sec)   p_kst 3.435060e-01   p_cons 4.489362e-04   p_joint 3.029787e-03

Joint ci ratio: 4.228515e-02	ci left: 2.963535e-03	ci right 3.091902e-03	k: 8567	n:2830000
Cons ci ratio: 1.098434e-01	ci left: 4.251110e-04	ci right 4.748604e-04	k: 1272	n:2830000
KS ci ratio: 3.221305e-03	ci left: 3.429619e-01	ci right 3.440688e-01	k: 972148	n:2830000
HTR6   2830000 perm   3772 sec   (750 perm/sec)   p_kst 3.435152e-01   p_cons 4.494700e-04   p_joint 3.027208e-03

Joint ci ratio: 4.222609e-02	ci left: 2.961462e-03	ci right 3.089555e-03	k: 8591	n:2840000
Cons ci ratio: 1.097143e-01	ci left: 4.246414e-04	ci right 4.742737e-04	k: 1275	n:2840000
KS ci ratio: 3.215735e-03	ci left: 3.429480e-01	ci right 3.440530e-01	k: 975541	n:2840000
HTR6   2840000 perm   3805 sec   (746 perm/sec)   p_kst 3.435004e-01   p_cons 4.489437e-04   p_joint 3.025000e-03

Joint ci ratio: 4.335161e-02	ci left: 2.798678e-03	ci right 2.923037e-03	k: 8152	n:2850000
Cons ci ratio: 1.095855e-01	ci left: 4.241752e-04	ci right 4.736911e-04	k: 1278	n:2850000
KS ci ratio: 3.210063e-03	ci left: 3.429525e-01	ci right 3.440555e-01	k: 978986	n:2850000
HTR6   2850000 perm   3840 sec   (742 perm/sec)   p_kst 3.435039e-01   p_cons 4.484211e-04   p_joint 2.860351e-03

Joint ci ratio: 4.343739e-02	ci left: 2.777824e-03	ci right 2.901507e-03	k: 8120	n:2860000
Cons ci ratio: 1.093720e-01	ci left: 4.243925e-04	ci right 4.738309e-04	k: 1283	n:2860000
KS ci ratio: 3.204409e-03	ci left: 3.429587e-01	ci right 3.440598e-01	k: 982436	n:2860000
HTR6   2860000 perm   3863 sec   (740 perm/sec)   p_kst 3.435091e-01   p_cons 4.486014e-04   p_joint 2.839161e-03

Joint ci ratio: 4.376854e-02	ci left: 2.726099e-03	ci right 2.848427e-03	k: 7998	n:2870000
Cons ci ratio: 1.092444e-01	ci left: 4.239305e-04	ci right 4.732538e-04	k: 1286	n:2870000
KS ci ratio: 3.198894e-03	ci left: 3.429495e-01	ci right 3.440487e-01	k: 985842	n:2870000
HTR6   2870000 perm   3887 sec   (738 perm/sec)   p_kst 3.434990e-01   p_cons 4.480836e-04   p_joint 2.786760e-03

Joint ci ratio: 4.367577e-02	ci left: 2.728310e-03	ci right 2.850471e-03	k: 8032	n:2880000
Cons ci ratio: 1.089485e-01	ci left: 4.248227e-04	ci right 4.741074e-04	k: 1293	n:2880000
KS ci ratio: 3.193288e-03	ci left: 3.429571e-01	ci right 3.440543e-01	k: 989296	n:2880000
HTR6   2880000 perm   3910 sec   (737 perm/sec)   p_kst 3.435056e-01   p_cons 4.489583e-04   p_joint 2.788889e-03

Joint ci ratio: 4.359985e-02	ci left: 2.728452e-03	ci right 2.850402e-03	k: 8060	n:2890000
Cons ci ratio: 1.087805e-01	ci left: 4.246991e-04	ci right 4.738887e-04	k: 1297	n:2890000
KS ci ratio: 3.187669e-03	ci left: 3.429708e-01	ci right 3.440662e-01	k: 992768	n:2890000
HTR6   2890000 perm   3933 sec   (735 perm/sec)   p_kst 3.435183e-01   p_cons 4.487889e-04   p_joint 2.788927e-03

Joint ci ratio: 4.369256e-02	ci left: 2.707447e-03	ci right 2.828722e-03	k: 8026	n:2900000
Cons ci ratio: 1.086968e-01	ci left: 4.239056e-04	ci right 4.729630e-04	k: 1299	n:2900000
KS ci ratio: 3.182093e-03	ci left: 3.429824e-01	ci right 3.440759e-01	k: 996234	n:2900000
HTR6   2900000 perm   3956 sec   (733 perm/sec)   p_kst 3.435290e-01   p_cons 4.479310e-04   p_joint 2.767586e-03

Joint ci ratio: 4.374197e-02	ci left: 2.692024e-03	ci right 2.812749e-03	k: 8008	n:2910000
Cons ci ratio: 1.085300e-01	ci left: 4.237861e-04	ci right 4.727496e-04	k: 1303	n:2910000
KS ci ratio: 3.176653e-03	ci left: 3.429788e-01	ci right 3.440703e-01	k: 999656	n:2910000
HTR6   2910000 perm   3979 sec   (731 perm/sec)   p_kst 3.435244e-01   p_cons 4.477663e-04   p_joint 2.751890e-03

Joint ci ratio: 4.365482e-02	ci left: 2.693644e-03	ci right 2.814195e-03	k: 8040	n:2920000
Cons ci ratio: 1.083225e-01	ci left: 4.240006e-04	ci right 4.728893e-04	k: 1308	n:2920000
KS ci ratio: 3.171171e-03	ci left: 3.429851e-01	ci right 3.440748e-01	k: 1003107	n:2920000
HTR6   2920000 perm   4004 sec   (729 perm/sec)   p_kst 3.435298e-01   p_cons 4.479452e-04   p_joint 2.753425e-03

Joint ci ratio: 4.357630e-02	ci left: 2.694241e-03	ci right 2.814595e-03	k: 8069	n:2930000
Cons ci ratio: 1.080340e-01	ci left: 4.248780e-04	ci right 4.737290e-04	k: 1315	n:2930000
KS ci ratio: 3.165870e-03	ci left: 3.429695e-01	ci right 3.440574e-01	k: 1006494	n:2930000
HTR6   2930000 perm   4028 sec   (727 perm/sec)   p_kst 3.435133e-01   p_cons 4.488055e-04   p_joint 2.753925e-03

Joint ci ratio: 4.350089e-02	ci left: 2.694497e-03	ci right 2.814649e-03	k: 8097	n:2940000
Cons ci ratio: 1.077885e-01	ci left: 4.254186e-04	ci right 4.742136e-04	k: 1321	n:2940000
KS ci ratio: 3.160646e-03	ci left: 3.429470e-01	ci right 3.440329e-01	k: 1009860	n:2940000
HTR6   2940000 perm   4052 sec   (725 perm/sec)   p_kst 3.434898e-01   p_cons 4.493197e-04   p_joint 2.754082e-03

Joint ci ratio: 4.342052e-02	ci left: 2.695422e-03	ci right 2.815388e-03	k: 8127	n:2950000
Cons ci ratio: 1.076259e-01	ci left: 4.252959e-04	ci right 4.739985e-04	k: 1325	n:2950000
KS ci ratio: 3.155251e-03	ci left: 3.429527e-01	ci right 3.440368e-01	k: 1013309	n:2950000
HTR6   2950000 perm   4111 sec   (718 perm/sec)   p_kst 3.434946e-01   p_cons 4.491525e-04   p_joint 2.754915e-03

Joint ci ratio: 4.334592e-02	ci left: 2.695672e-03	ci right 2.815439e-03	k: 8155	n:2960000
Cons ci ratio: 1.073428e-01	ci left: 4.261604e-04	ci right 4.748256e-04	k: 1332	n:2960000
KS ci ratio: 3.150103e-03	ci left: 3.429269e-01	ci right 3.440092e-01	k: 1016665	n:2960000
HTR6   2960000 perm   4135 sec   (716 perm/sec)   p_kst 3.434679e-01   p_cons 4.500000e-04   p_joint 2.755068e-03

Joint ci ratio: 4.326905e-02	ci left: 2.696255e-03	ci right 2.815829e-03	k: 8184	n:2970000
Cons ci ratio: 1.070621e-01	ci left: 4.270192e-04	ci right 4.756469e-04	k: 1339	n:2970000
KS ci ratio: 3.144938e-03	ci left: 3.429074e-01	ci right 3.439878e-01	k: 1020039	n:2970000
HTR6   2970000 perm   4162 sec   (714 perm/sec)   p_kst 3.434475e-01   p_cons 4.508418e-04   p_joint 2.755556e-03

Joint ci ratio: 4.319523e-02	ci left: 2.696501e-03	ci right 2.815878e-03	k: 8212	n:2980000
Cons ci ratio: 1.069823e-01	ci left: 4.262394e-04	ci right 4.747399e-04	k: 1341	n:2980000
KS ci ratio: 3.139347e-03	ci left: 3.429528e-01	ci right 3.440314e-01	k: 1023606	n:2980000
HTR6   2980000 perm   4186 sec   (712 perm/sec)   p_kst 3.434919e-01   p_cons 4.500000e-04   p_joint 2.755705e-03

Joint ci ratio: 4.311654e-02	ci left: 2.697408e-03	ci right 2.816602e-03	k: 8242	n:2990000
Cons ci ratio: 1.067835e-01	ci left: 4.264414e-04	ci right 4.748691e-04	k: 1346	n:2990000
KS ci ratio: 3.134163e-03	ci left: 3.429437e-01	ci right 3.440205e-01	k: 1027011	n:2990000
HTR6   2990000 perm   4210 sec   (710 perm/sec)   p_kst 3.434819e-01   p_cons 4.501672e-04   p_joint 2.756522e-03

Joint ci ratio: 4.308268e-02	ci left: 2.692703e-03	ci right 2.811593e-03	k: 8255	n:3000000
Cons ci ratio: 1.064285e-01	ci left: 4.279400e-04	ci right 4.763661e-04	k: 1355	n:3000000
KS ci ratio: 3.128860e-03	ci left: 3.429553e-01	ci right 3.440303e-01	k: 1030478	n:3000000
HTR6   3000000 perm   4234 sec   (709 perm/sec)   p_kst 3.434927e-01   p_cons 4.516667e-04   p_joint 2.751667e-03

Joint ci ratio: 4.305413e-02	ci left: 2.687372e-03	ci right 2.805946e-03	k: 8266	n:3010000
Cons ci ratio: 1.062328e-01	ci left: 4.281352e-04	ci right 4.764888e-04	k: 1360	n:3010000
KS ci ratio: 3.123656e-03	ci left: 3.429565e-01	ci right 3.440298e-01	k: 1033914	n:3010000
HTR6   3010000 perm   4259 sec   (707 perm/sec)   p_kst 3.434930e-01   p_cons 4.518272e-04   p_joint 2.746179e-03

Joint ci ratio: 4.298660e-02	ci left: 2.686990e-03	ci right 2.805357e-03	k: 8292	n:3020000
Cons ci ratio: 1.061160e-01	ci left: 4.276845e-04	ci right 4.759308e-04	k: 1363	n:3020000
KS ci ratio: 3.118455e-03	ci left: 3.429611e-01	ci right 3.440326e-01	k: 1037360	n:3020000
HTR6   3020000 perm   4283 sec   (705 perm/sec)   p_kst 3.434967e-01   p_cons 4.513245e-04   p_joint 2.745695e-03

Joint ci ratio: 4.315146e-02	ci left: 2.657553e-03	ci right 2.775083e-03	k: 8229	n:3030000
Cons ci ratio: 1.058833e-01	ci left: 4.282007e-04	ci right 4.763927e-04	k: 1369	n:3030000
KS ci ratio: 3.113220e-03	ci left: 3.429742e-01	ci right 3.440439e-01	k: 1040832	n:3030000
HTR6   3030000 perm   4307 sec   (704 perm/sec)   p_kst 3.435089e-01   p_cons 4.518152e-04   p_joint 2.715842e-03

Joint ci ratio: 4.308870e-02	ci left: 2.656621e-03	ci right 2.773935e-03	k: 8253	n:3040000
Cons ci ratio: 1.058062e-01	ci left: 4.274326e-04	ci right 4.755009e-04	k: 1371	n:3040000
KS ci ratio: 3.108082e-03	ci left: 3.429770e-01	ci right 3.440450e-01	k: 1044273	n:3040000
HTR6   3040000 perm   4331 sec   (702 perm/sec)   p_kst 3.435109e-01   p_cons 4.509868e-04   p_joint 2.714803e-03

Joint ci ratio: 4.308889e-02	ci left: 2.647911e-03	ci right 2.764840e-03	k: 8253	n:3050000
Cons ci ratio: 1.057292e-01	ci left: 4.266696e-04	ci right 4.746150e-04	k: 1373	n:3050000
KS ci ratio: 3.103098e-03	ci left: 3.429611e-01	ci right 3.440273e-01	k: 1047657	n:3050000
HTR6   3050000 perm   4355 sec   (700 perm/sec)   p_kst 3.434941e-01   p_cons 4.501639e-04   p_joint 2.705902e-03

Joint ci ratio: 4.302119e-02	ci left: 2.647663e-03	ci right 2.764393e-03	k: 8279	n:3060000
Cons ci ratio: 1.056523e-01	ci left: 4.259116e-04	ci right 4.737348e-04	k: 1375	n:3060000
KS ci ratio: 3.097812e-03	ci left: 3.429927e-01	ci right 3.440572e-01	k: 1051186	n:3060000
HTR6   3060000 perm   4379 sec   (699 perm/sec)   p_kst 3.435248e-01   p_cons 4.493464e-04   p_joint 2.705556e-03

Joint ci ratio: 4.293309e-02	ci left: 2.649994e-03	ci right 2.766582e-03	k: 8313	n:3070000
Cons ci ratio: 1.054227e-01	ci left: 4.264270e-04	ci right 4.741977e-04	k: 1381	n:3070000
KS ci ratio: 3.092813e-03	ci left: 3.429864e-01	ci right 3.440491e-01	k: 1054599	n:3070000
HTR6   3070000 perm   4403 sec   (697 perm/sec)   p_kst 3.435176e-01   p_cons 4.498371e-04   p_joint 2.707818e-03

Joint ci ratio: 4.293328e-02	ci left: 2.641390e-03	ci right 2.757600e-03	k: 8313	n:3080000
Cons ci ratio: 1.052325e-01	ci left: 4.266232e-04	ci right 4.743242e-04	k: 1386	n:3080000
KS ci ratio: 3.087893e-03	ci left: 3.429719e-01	ci right 3.440329e-01	k: 1057987	n:3080000
HTR6   3080000 perm   4427 sec   (696 perm/sec)   p_kst 3.435023e-01   p_cons 4.500000e-04   p_joint 2.699026e-03

Joint ci ratio: 4.244733e-02	ci left: 2.693996e-03	ci right 2.811146e-03	k: 8504	n:3090000
Cons ci ratio: 1.049679e-01	ci left: 4.274483e-04	ci right 4.751141e-04	k: 1393	n:3090000
KS ci ratio: 3.083093e-03	ci left: 3.429433e-01	ci right 3.440026e-01	k: 1061331	n:3090000
HTR6   3090000 perm   4452 sec   (694 perm/sec)   p_kst 3.434728e-01   p_cons 4.508091e-04   p_joint 2.752104e-03

Joint ci ratio: 4.235523e-02	ci left: 2.697115e-03	ci right 2.814140e-03	k: 8541	n:3100000
Cons ci ratio: 1.047427e-01	ci left: 4.279542e-04	ci right 4.755677e-04	k: 1399	n:3100000
KS ci ratio: 3.078092e-03	ci left: 3.429478e-01	ci right 3.440054e-01	k: 1064777	n:3100000
HTR6   3100000 perm   4476 sec   (693 perm/sec)   p_kst 3.434765e-01   p_cons 4.512903e-04   p_joint 2.755161e-03

Joint ci ratio: 4.240273e-02	ci left: 2.682397e-03	ci right 2.798917e-03	k: 8522	n:3110000
Cons ci ratio: 1.045562e-01	ci left: 4.281438e-04	ci right 4.756883e-04	k: 1404	n:3110000
KS ci ratio: 3.073207e-03	ci left: 3.429388e-01	ci right 3.439946e-01	k: 1068181	n:3110000
HTR6   3110000 perm   4500 sec   (691 perm/sec)   p_kst 3.434666e-01   p_cons 4.514469e-04   p_joint 2.740193e-03

Joint ci ratio: 4.233325e-02	ci left: 2.682679e-03	ci right 2.799016e-03	k: 8550	n:3120000
Cons ci ratio: 1.044819e-01	ci left: 4.273958e-04	ci right 4.748214e-04	k: 1406	n:3120000
KS ci ratio: 3.068377e-03	ci left: 3.429250e-01	ci right 3.439791e-01	k: 1071570	n:3120000
HTR6   3120000 perm   4525 sec   (690 perm/sec)   p_kst 3.434519e-01   p_cons 4.506410e-04   p_joint 2.740385e-03

Joint ci ratio: 4.175949e-02	ci left: 2.748717e-03	ci right 2.866263e-03	k: 8786	n:3130000
Cons ci ratio: 1.042598e-01	ci left: 4.278972e-04	ci right 4.752714e-04	k: 1412	n:3130000
KS ci ratio: 3.063430e-03	ci left: 3.429321e-01	ci right 3.439845e-01	k: 1075024	n:3130000
HTR6   3130000 perm   4550 sec   (688 perm/sec)   p_kst 3.434581e-01   p_cons 4.511182e-04   p_joint 2.807029e-03

Joint ci ratio: 4.152575e-02	ci left: 2.771164e-03	ci right 2.888991e-03	k: 8885	n:3140000
Cons ci ratio: 1.040758e-01	ci left: 4.280854e-04	ci right 4.753916e-04	k: 1417	n:3140000
KS ci ratio: 3.058449e-03	ci left: 3.429474e-01	ci right 3.439982e-01	k: 1078504	n:3140000
HTR6   3140000 perm   4575 sec   (686 perm/sec)   p_kst 3.434726e-01   p_cons 4.512739e-04   p_joint 2.829618e-03

Joint ci ratio: 4.151422e-02	ci left: 2.763937e-03	ci right 2.881424e-03	k: 8890	n:3150000
Cons ci ratio: 1.038198e-01	ci left: 4.288908e-04	ci right 4.761624e-04	k: 1424	n:3150000
KS ci ratio: 3.053685e-03	ci left: 3.429343e-01	ci right 3.439834e-01	k: 1081895	n:3150000
HTR6   3150000 perm   4599 sec   (685 perm/sec)   p_kst 3.434587e-01   p_cons 4.520635e-04   p_joint 2.822222e-03

Joint ci ratio: 4.143969e-02	ci left: 2.765212e-03	ci right 2.882537e-03	k: 8922	n:3160000
Cons ci ratio: 1.036744e-01	ci left: 4.287665e-04	ci right 4.759542e-04	k: 1428	n:3160000
KS ci ratio: 3.048786e-03	ci left: 3.429445e-01	ci right 3.439919e-01	k: 1085359	n:3160000
HTR6   3160000 perm   4624 sec   (683 perm/sec)   p_kst 3.434680e-01   p_cons 4.518987e-04   p_joint 2.823418e-03

Joint ci ratio: 4.139106e-02	ci left: 2.763045e-03	ci right 2.880137e-03	k: 8943	n:3170000
Cons ci ratio: 1.036745e-01	ci left: 4.274139e-04	ci right 4.744528e-04	k: 1428	n:3170000
KS ci ratio: 3.044003e-03	ci left: 3.429410e-01	ci right 3.439868e-01	k: 1088780	n:3170000
HTR6   3170000 perm   4649 sec   (682 perm/sec)   p_kst 3.434637e-01   p_cons 4.504732e-04   p_joint 2.821136e-03

Joint ci ratio: 4.133567e-02	ci left: 2.761826e-03	ci right 2.878705e-03	k: 8967	n:3180000
Cons ci ratio: 1.035659e-01	ci left: 4.269888e-04	ci right 4.739286e-04	k: 1431	n:3180000
KS ci ratio: 3.039312e-03	ci left: 3.429271e-01	ci right 3.439713e-01	k: 1092168	n:3180000
HTR6   3180000 perm   4675 sec   (680 perm/sec)   p_kst 3.434491e-01   p_cons 4.500000e-04   p_joint 2.819811e-03

Joint ci ratio: 4.127129e-02	ci left: 2.761855e-03	ci right 2.878549e-03	k: 8995	n:3190000
Cons ci ratio: 1.034576e-01	ci left: 4.265664e-04	ci right 4.734077e-04	k: 1434	n:3190000
KS ci ratio: 3.034482e-03	ci left: 3.429372e-01	ci right 3.439797e-01	k: 1095632	n:3190000
HTR6   3190000 perm   4700 sec   (679 perm/sec)   p_kst 3.434583e-01   p_cons 4.495298e-04   p_joint 2.819749e-03

Joint ci ratio: 4.126917e-02	ci left: 2.753533e-03	ci right 2.869870e-03	k: 8996	n:3200000
Cons ci ratio: 1.033496e-01	ci left: 4.261466e-04	ci right 4.728901e-04	k: 1437	n:3200000
KS ci ratio: 3.029849e-03	ci left: 3.429213e-01	ci right 3.439621e-01	k: 1099013	n:3200000
HTR6   3200000 perm   4725 sec   (677 perm/sec)   p_kst 3.434416e-01   p_cons 4.490625e-04   p_joint 2.811250e-03

Joint ci ratio: 4.120282e-02	ci left: 2.753896e-03	ci right 2.870057e-03	k: 9025	n:3210000
Cons ci ratio: 1.032420e-01	ci left: 4.257295e-04	ci right 4.723756e-04	k: 1440	n:3210000
KS ci ratio: 3.025186e-03	ci left: 3.429132e-01	ci right 3.439525e-01	k: 1102419	n:3210000
HTR6   3210000 perm   4750 sec   (676 perm/sec)   p_kst 3.434327e-01   p_cons 4.485981e-04   p_joint 2.811526e-03

Joint ci ratio: 4.120300e-02	ci left: 2.745343e-03	ci right 2.861144e-03	k: 9025	n:3220000
Cons ci ratio: 1.028856e-01	ci left: 4.274329e-04	ci right 4.740942e-04	k: 1450	n:3220000
KS ci ratio: 3.020541e-03	ci left: 3.429056e-01	ci right 3.439432e-01	k: 1105826	n:3220000
HTR6   3220000 perm   4776 sec   (674 perm/sec)   p_kst 3.434242e-01   p_cons 4.503106e-04   p_joint 2.802795e-03

Joint ci ratio: 3.828828e-02	ci left: 3.172735e-03	ci right 3.296889e-03	k: 10447	n:3230000
Cons ci ratio: 1.027087e-01	ci left: 4.276178e-04	ci right 4.742142e-04	k: 1455	n:3230000
KS ci ratio: 3.015865e-03	ci left: 3.429060e-01	ci right 3.439420e-01	k: 1109259	n:3230000
HTR6   3230000 perm   4802 sec   (673 perm/sec)   p_kst 3.434238e-01   p_cons 4.504644e-04   p_joint 3.234365e-03

Joint ci ratio: 3.832161e-02	ci left: 3.157440e-03	ci right 3.281105e-03	k: 10429	n:3240000
Cons ci ratio: 1.026031e-01	ci left: 4.272001e-04	ci right 4.737003e-04	k: 1458	n:3240000
KS ci ratio: 3.011205e-03	ci left: 3.429070e-01	ci right 3.439414e-01	k: 1112694	n:3240000
HTR6   3240000 perm   4828 sec   (671 perm/sec)   p_kst 3.434241e-01   p_cons 4.500000e-04   p_joint 3.218827e-03

Joint ci ratio: 4.057936e-02	ci left: 2.804972e-03	ci right 2.921455e-03	k: 9304	n:3250000
Cons ci ratio: 1.024277e-01	ci left: 4.273847e-04	ci right 4.738206e-04	k: 1463	n:3250000
KS ci ratio: 3.006461e-03	ci left: 3.429240e-01	ci right 3.439569e-01	k: 1116181	n:3250000
HTR6   3250000 perm   4853 sec   (670 perm/sec)   p_kst 3.434403e-01   p_cons 4.501538e-04   p_joint 2.862769e-03

Joint ci ratio: 4.050757e-02	ci left: 2.806388e-03	ci right 2.922719e-03	k: 9337	n:3260000
Cons ci ratio: 1.021837e-01	ci left: 4.281660e-04	ci right 4.745693e-04	k: 1470	n:3260000
KS ci ratio: 3.001902e-03	ci left: 3.429164e-01	ci right 3.439477e-01	k: 1119588	n:3260000
HTR6   3260000 perm   4879 sec   (668 perm/sec)   p_kst 3.434319e-01   p_cons 4.509202e-04   p_joint 2.864110e-03

Joint ci ratio: 4.044048e-02	ci left: 2.807190e-03	ci right 2.923357e-03	k: 9368	n:3270000
Cons ci ratio: 1.019759e-01	ci left: 4.286446e-04	ci right 4.749997e-04	k: 1476	n:3270000
KS ci ratio: 2.997358e-03	ci left: 3.429098e-01	ci right 3.439394e-01	k: 1122998	n:3270000
HTR6   3270000 perm   4906 sec   (667 perm/sec)   p_kst 3.434245e-01   p_cons 4.513761e-04   p_joint 2.864832e-03

Joint ci ratio: 4.038235e-02	ci left: 2.806780e-03	ci right 2.922759e-03	k: 9395	n:3280000
Cons ci ratio: 1.017694e-01	ci left: 4.291205e-04	ci right 4.754274e-04	k: 1482	n:3280000
KS ci ratio: 2.992808e-03	ci left: 3.429071e-01	ci right 3.439352e-01	k: 1126421	n:3280000
HTR6   3280000 perm   4931 sec   (665 perm/sec)   p_kst 3.434210e-01   p_cons 4.518293e-04   p_joint 2.864329e-03

Joint ci ratio: 4.033519e-02	ci left: 2.804868e-03	ci right 2.920630e-03	k: 9417	n:3290000
Cons ci ratio: 1.016324e-01	ci left: 4.290010e-04	ci right 4.752291e-04	k: 1486	n:3290000
KS ci ratio: 2.988299e-03	ci left: 3.429015e-01	ci right 3.439280e-01	k: 1129834	n:3290000
HTR6   3290000 perm   4957 sec   (664 perm/sec)   p_kst 3.434146e-01   p_cons 4.516717e-04   p_joint 2.862310e-03

Joint ci ratio: 4.033537e-02	ci left: 2.796368e-03	ci right 2.911780e-03	k: 9417	n:3300000
Cons ci ratio: 1.015301e-01	ci left: 4.285870e-04	ci right 4.747212e-04	k: 1489	n:3300000
KS ci ratio: 2.983754e-03	ci left: 3.429043e-01	ci right 3.439293e-01	k: 1133275	n:3300000
HTR6   3300000 perm   4983 sec   (662 perm/sec)   p_kst 3.434167e-01   p_cons 4.512121e-04   p_joint 2.853636e-03

Joint ci ratio: 4.033984e-02	ci left: 2.787322e-03	ci right 2.902373e-03	k: 9415	n:3310000
Cons ci ratio: 1.014621e-01	ci left: 4.278811e-04	ci right 4.739065e-04	k: 1491	n:3310000
KS ci ratio: 2.979286e-03	ci left: 3.428987e-01	ci right 3.439221e-01	k: 1136688	n:3310000
HTR6   3310000 perm   5010 sec   (661 perm/sec)   p_kst 3.434103e-01   p_cons 4.504532e-04   p_joint 2.844411e-03

Joint ci ratio: 4.028642e-02	ci left: 2.786380e-03	ci right 2.901237e-03	k: 9440	n:3320000
Cons ci ratio: 1.013263e-01	ci left: 4.277665e-04	ci right 4.737145e-04	k: 1495	n:3320000
KS ci ratio: 2.974702e-03	ci left: 3.429136e-01	ci right 3.439355e-01	k: 1140169	n:3320000
HTR6   3320000 perm   5036 sec   (659 perm/sec)   p_kst 3.434244e-01   p_cons 4.503012e-04   p_joint 2.843373e-03

Joint ci ratio: 4.022681e-02	ci left: 2.786336e-03	ci right 2.901017e-03	k: 9468	n:3330000
Cons ci ratio: 1.010228e-01	ci left: 4.291163e-04	ci right 4.750630e-04	k: 1504	n:3330000
KS ci ratio: 2.970326e-03	ci left: 3.429002e-01	ci right 3.439205e-01	k: 1143556	n:3330000
HTR6   3330000 perm   5062 sec   (658 perm/sec)   p_kst 3.434102e-01   p_cons 4.516517e-04   p_joint 2.843243e-03

Joint ci ratio: 4.015475e-02	ci left: 2.788072e-03	ci right 2.902613e-03	k: 9502	n:3340000
Cons ci ratio: 1.006224e-01	ci left: 4.313337e-04	ci right 4.773240e-04	k: 1516	n:3340000
KS ci ratio: 2.965973e-03	ci left: 3.428863e-01	ci right 3.439050e-01	k: 1146941	n:3340000
HTR6   3340000 perm   5089 sec   (656 perm/sec)   p_kst 3.433955e-01   p_cons 4.538922e-04   p_joint 2.844910e-03

Joint ci ratio: 4.015916e-02	ci left: 2.779158e-03	ci right 2.893346e-03	k: 9500	n:3350000
Cons ci ratio: 1.005231e-01	ci left: 4.309192e-04	ci right 4.768172e-04	k: 1519	n:3350000
KS ci ratio: 2.961513e-03	ci left: 3.428915e-01	ci right 3.439088e-01	k: 1150390	n:3350000
HTR6   3350000 perm   5115 sec   (655 perm/sec)   p_kst 3.434000e-01   p_cons 4.534328e-04   p_joint 2.835821e-03

Joint ci ratio: 4.009590e-02	ci left: 2.779725e-03	ci right 2.893753e-03	k: 9530	n:3360000
Cons ci ratio: 1.003252e-01	ci left: 4.313775e-04	ci right 4.772286e-04	k: 1525	n:3360000
KS ci ratio: 2.957074e-03	ci left: 3.428967e-01	ci right 3.439125e-01	k: 1153839	n:3360000
HTR6   3360000 perm   5142 sec   (653 perm/sec)   p_kst 3.434045e-01   p_cons 4.538690e-04   p_joint 2.836310e-03

Joint ci ratio: 4.003503e-02	ci left: 2.779996e-03	ci right 2.893858e-03	k: 9559	n:3370000
Cons ci ratio: 1.001612e-01	ci left: 4.315440e-04	ci right 4.773334e-04	k: 1530	n:3370000
KS ci ratio: 2.952778e-03	ci left: 3.428829e-01	ci right 3.438972e-01	k: 1157224	n:3370000
HTR6   3370000 perm   5169 sec   (652 perm/sec)   p_kst 3.433899e-01   p_cons 4.540059e-04   p_joint 2.836499e-03

Joint ci ratio: 3.997862e-02	ci left: 2.779679e-03	ci right 2.893364e-03	k: 9586	n:3380000
Cons ci ratio: 9.999809e-02	ci left: 4.317095e-04	ci right 4.774374e-04	k: 1535	n:3380000
KS ci ratio: 2.948459e-03	ci left: 3.428757e-01	ci right 3.438884e-01	k: 1160631	n:3380000
HTR6   3380000 perm   5195 sec   (651 perm/sec)   p_kst 3.433820e-01   p_cons 4.541420e-04   p_joint 2.836095e-03

Outputting figure to mutsig2_images.part000000000082/HTR6.5_1335_3380000_0.34338_0.00045414_0.0028361.png
                gene_name: HTR6
               theta_stop: 0.100 
                    nperm: 3380000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.00045 
      ci_cons_bounds_left: 0.00043 
     ci_cons_bounds_right: 0.00048 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0028 
    ci_joint_bounds_right: 0.0029 

Current progress: 32 percent done.
HSPBAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
Cons ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
KS ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
HSPBAP1   10000 perm   1 sec   (6902 perm/sec)   p_kst 2.083000e-01   p_cons 2.926000e-01   p_joint 2.734000e-01

Outputting figure to mutsig2_images.part000000000082/HSPBAP1.4_1499_10000_0.2083_0.2926_0.2734.png
                gene_name: HSPBAP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 34 percent done.
HTR1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
HTR1F   10000 perm   1 sec   (7209 perm/sec)   p_kst 3.480000e-01   p_cons 1.557000e-01   p_joint 3.367000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1F.4_1105_10000_0.348_0.1557_0.3367.png
                gene_name: HTR1F
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 36 percent done.
HTRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
HTRA4   10000 perm   2 sec   (6504 perm/sec)   p_kst 3.683000e-01   p_cons 9.300000e-02   p_joint 3.027000e-01

Joint ci ratio: 6.186098e-02	ci left: 1.620027e-01	ci right 1.723942e-01	k: 3343	n:20000
Cons ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
KS ci ratio: 3.680235e-02	ci left: 3.552355e-01	ci right 3.686047e-01	k: 7238	n:20000
HTRA4   20000 perm   3 sec   (5864 perm/sec)   p_kst 3.619000e-01   p_cons 9.085000e-02   p_joint 1.671500e-01

Outputting figure to mutsig2_images.part000000000082/HTRA4.4_1467_20000_0.3619_0.09085_0.16715.png
                gene_name: HTRA4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
IBTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
KS ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
IBTK   10000 perm   2 sec   (5645 perm/sec)   p_kst 8.575000e-01   p_cons 4.415000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IBTK.4_4174_10000_0.8575_0.4415_1.png
                gene_name: IBTK
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ICK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
ICK   10000 perm   2 sec   (6532 perm/sec)   p_kst 5.412000e-01   p_cons 1.723000e-01   p_joint 4.181000e-01

Outputting figure to mutsig2_images.part000000000082/ICK.4_1951_10000_0.5412_0.1723_0.4181.png
                gene_name: ICK
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 41 percent done.
HSPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
HSPD1   10000 perm   1 sec   (6975 perm/sec)   p_kst 4.981000e-01   p_cons 1.975000e-01   p_joint 5.200000e-01

Outputting figure to mutsig2_images.part000000000082/HSPD1.3_1766_10000_0.4981_0.1975_0.52.png
                gene_name: HSPD1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 43 percent done.
HTR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
Cons ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
HTR2A   10000 perm   1 sec   (7000 perm/sec)   p_kst 1.910000e-02   p_cons 4.424000e-01   p_joint 6.360000e-02

Joint ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
Cons ci ratio: 3.143674e-02	ci left: 4.304596e-01	ci right 4.442586e-01	k: 8747	n:20000
KS ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
HTR2A   20000 perm   3 sec   (6251 perm/sec)   p_kst 1.995000e-02   p_cons 4.373500e-01   p_joint 2.490000e-02

Joint ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
Cons ci ratio: 2.575498e-02	ci left: 4.300788e-01	ci right 4.413336e-01	k: 13071	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
HTR2A   30000 perm   5 sec   (5961 perm/sec)   p_kst 1.950000e-02   p_cons 4.357000e-01   p_joint 2.686667e-02

Joint ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
Cons ci ratio: 2.236841e-02	ci left: 4.294350e-01	ci right 4.391745e-01	k: 17372	n:40000
KS ci ratio: 1.369366e-01	ci left: 1.869877e-02	ci right 2.147152e-02	k: 802	n:40000
HTR2A   40000 perm   7 sec   (5761 perm/sec)   p_kst 2.005000e-02   p_cons 4.343000e-01   p_joint 2.982500e-02

Joint ci ratio: 1.148713e-01	ci left: 2.145110e-02	ci right 2.408471e-02	k: 1137	n:50000
Cons ci ratio: 2.046647e-02	ci left: 4.188440e-01	ci right 4.275249e-01	k: 21159	n:50000
KS ci ratio: 1.238565e-01	ci left: 1.842230e-02	ci right 2.087392e-02	k: 981	n:50000
HTR2A   50000 perm   9 sec   (5584 perm/sec)   p_kst 1.962000e-02   p_cons 4.231800e-01   p_joint 2.274000e-02

Joint ci ratio: 9.397299e-02	ci left: 2.685735e-02	ci right 2.952188e-02	k: 1690	n:60000
Cons ci ratio: 1.834351e-02	ci left: 4.281979e-01	ci right 4.361420e-01	k: 25930	n:60000
KS ci ratio: 1.138762e-01	ci left: 1.826274e-02	ci right 2.048410e-02	k: 1161	n:60000
HTR2A   60000 perm   11 sec   (5449 perm/sec)   p_kst 1.935000e-02   p_cons 4.321667e-01   p_joint 2.816667e-02

Joint ci ratio: 9.497645e-02	ci left: 2.262765e-02	ci right 2.489778e-02	k: 1662	n:70000
Cons ci ratio: 1.695307e-02	ci left: 4.293537e-01	ci right 4.367090e-01	k: 30312	n:70000
KS ci ratio: 1.043227e-01	ci left: 1.873902e-02	ci right 2.081535e-02	k: 1383	n:70000
HTR2A   70000 perm   13 sec   (5326 perm/sec)   p_kst 1.975714e-02   p_cons 4.330286e-01   p_joint 2.374286e-02

Joint ci ratio: 9.918714e-02	ci left: 1.819932e-02	ci right 2.011078e-02	k: 1531	n:80000
Cons ci ratio: 1.583814e-02	ci left: 4.302121e-01	ci right 4.370927e-01	k: 34692	n:80000
KS ci ratio: 9.729406e-02	ci left: 1.891903e-02	ci right 2.086600e-02	k: 1590	n:80000
HTR2A   80000 perm   15 sec   (5209 perm/sec)   p_kst 1.987500e-02   p_cons 4.336500e-01   p_joint 1.913750e-02

Outputting figure to mutsig2_images.part000000000082/HTR2A.3_1592_80000_0.019875_0.43365_0.019138.png
                gene_name: HTR2A
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 45 percent done.
HTR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
Cons ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
HTR7   10000 perm   1 sec   (6850 perm/sec)   p_kst 8.940000e-02   p_cons 2.310000e-02   p_joint 1.495000e-01

Joint ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
Cons ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
KS ci ratio: 9.102956e-02	ci left: 8.097465e-02	ci right 8.874654e-02	k: 1696	n:20000
HTR7   20000 perm   3 sec   (6106 perm/sec)   p_kst 8.480000e-02   p_cons 2.145000e-02   p_joint 8.500000e-02

Joint ci ratio: 7.048281e-02	ci left: 9.016279e-02	ci right 9.678284e-02	k: 2803	n:30000
Cons ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
KS ci ratio: 7.436574e-02	ci left: 8.160570e-02	ci right 8.794166e-02	k: 2542	n:30000
HTR7   30000 perm   5 sec   (5834 perm/sec)   p_kst 8.473333e-02   p_cons 2.216667e-02   p_joint 9.343333e-02

Joint ci ratio: 7.595828e-02	ci left: 6.004894e-02	ci right 6.481482e-02	k: 2496	n:40000
Cons ci ratio: 1.303020e-01	ci left: 2.068161e-02	ci right 2.358834e-02	k: 884	n:40000
KS ci ratio: 6.490257e-02	ci left: 8.085607e-02	ci right 8.630456e-02	k: 3342	n:40000
HTR7   40000 perm   7 sec   (5624 perm/sec)   p_kst 8.355000e-02   p_cons 2.210000e-02   p_joint 6.240000e-02

Joint ci ratio: 5.671881e-02	ci left: 8.472136e-02	ci right 8.968669e-02	k: 4359	n:50000
Cons ci ratio: 1.160773e-01	ci left: 2.100411e-02	ci right 2.361176e-02	k: 1114	n:50000
KS ci ratio: 5.788275e-02	ci left: 8.158283e-02	ci right 8.646559e-02	k: 4200	n:50000
HTR7   50000 perm   9 sec   (5443 perm/sec)   p_kst 8.400000e-02   p_cons 2.228000e-02   p_joint 8.718000e-02

Joint ci ratio: 5.148648e-02	ci left: 8.582720e-02	ci right 9.037940e-02	k: 5285	n:60000
Cons ci ratio: 1.069906e-01	ci left: 2.071130e-02	ci right 2.306860e-02	k: 1312	n:60000
KS ci ratio: 5.281211e-02	ci left: 8.187463e-02	ci right 8.633236e-02	k: 5045	n:60000
HTR7   60000 perm   11 sec   (5330 perm/sec)   p_kst 8.408333e-02   p_cons 2.186667e-02   p_joint 8.808333e-02

Joint ci ratio: 4.353165e-02	ci left: 1.015499e-01	ci right 1.060830e-01	k: 7266	n:70000
Cons ci ratio: 9.978361e-02	ci left: 2.049399e-02	ci right 2.266021e-02	k: 1509	n:70000
KS ci ratio: 4.894905e-02	ci left: 8.187049e-02	ci right 8.599265e-02	k: 5874	n:70000
HTR7   70000 perm   13 sec   (5223 perm/sec)   p_kst 8.391429e-02   p_cons 2.155714e-02   p_joint 1.038000e-01

Outputting figure to mutsig2_images.part000000000082/HTR7.3_1460_70000_0.083914_0.021557_0.1038.png
                gene_name: HTR7
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 46 percent done.
HTRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
Cons ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
KS ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
HTRA1   10000 perm   1 sec   (6858 perm/sec)   p_kst 3.654000e-01   p_cons 8.111000e-01   p_joint 4.838000e-01

Outputting figure to mutsig2_images.part000000000082/HTRA1.3_1479_10000_0.3654_0.8111_0.4838.png
                gene_name: HTRA1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 48 percent done.
HUNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
Cons ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
KS ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
HUNK   10000 perm   1 sec   (6748 perm/sec)   p_kst 4.945000e-01   p_cons 1.926000e-01   p_joint 4.351000e-01

Outputting figure to mutsig2_images.part000000000082/HUNK.3_2189_10000_0.4945_0.1926_0.4351.png
                gene_name: HUNK
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 50 percent done.
HVCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
Cons ci ratio: 4.030713e-02	ci left: 4.761593e-01	ci right 4.958489e-01	k: 4860	n:10000
KS ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
HVCN1   10000 perm   1 sec   (7503 perm/sec)   p_kst 8.470000e-01   p_cons 4.860000e-01   p_joint 8.501000e-01

Outputting figure to mutsig2_images.part000000000082/HVCN1.3_846_10000_0.847_0.486_0.8501.png
                gene_name: HVCN1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 52 percent done.
HYOU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
Cons ci ratio: 3.141317e-02	ci left: 5.992548e-01	ci right 6.184817e-01	k: 6089	n:10000
KS ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
HYOU1   10000 perm   2 sec   (6190 perm/sec)   p_kst 3.158000e-01   p_cons 6.089000e-01   p_joint 5.034000e-01

Outputting figure to mutsig2_images.part000000000082/HYOU1.3_3100_10000_0.3158_0.6089_0.5034.png
                gene_name: HYOU1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 54 percent done.
ICA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
Cons ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
KS ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
ICA1L   10000 perm   1 sec   (6886 perm/sec)   p_kst 1.709000e-01   p_cons 1.825000e-01   p_joint 3.935000e-01

Outputting figure to mutsig2_images.part000000000082/ICA1L.3_1511_10000_0.1709_0.1825_0.3935.png
                gene_name: ICA1L
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
ICAM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
Cons ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
KS ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
ICAM5   10000 perm   2 sec   (6468 perm/sec)   p_kst 8.700000e-02   p_cons 8.940000e-01   p_joint 2.674000e-01

Joint ci ratio: 5.656118e-02	ci left: 1.881439e-01	ci right 1.991453e-01	k: 3872	n:20000
Cons ci ratio: 9.510534e-03	ci left: 8.903636e-01	ci right 8.989213e-01	k: 17894	n:20000
KS ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
ICAM5   20000 perm   3 sec   (5818 perm/sec)   p_kst 8.885000e-02   p_cons 8.947000e-01   p_joint 1.936000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM5.3_2819_20000_0.08885_0.8947_0.1936.png
                gene_name: ICAM5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 57 percent done.
IDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
KS ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
IDS   10000 perm   1 sec   (6810 perm/sec)   p_kst 1.828000e-01   p_cons 5.092000e-01   p_joint 2.469000e-01

Outputting figure to mutsig2_images.part000000000082/IDS.3_1719_10000_0.1828_0.5092_0.2469.png
                gene_name: IDS
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 59 percent done.
HSPB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
KS ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
HSPB7   10000 perm   1 sec   (7967 perm/sec)   p_kst 5.267000e-01   p_cons 2.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPB7.2_525_10000_0.5267_0.2764_1.png
                gene_name: HSPB7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
HSPB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
HSPB9   10000 perm   1 sec   (8026 perm/sec)   p_kst 4.501000e-01   p_cons 1.180000e-02   p_joint 1.660000e-02

Joint ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
Cons ci ratio: 2.424634e-01	ci left: 1.133522e-02	ci right 1.450873e-02	k: 257	n:20000
KS ci ratio: 3.059506e-02	ci left: 4.438368e-01	ci right 4.576776e-01	k: 9015	n:20000
HSPB9   20000 perm   3 sec   (7093 perm/sec)   p_kst 4.507500e-01   p_cons 1.285000e-02   p_joint 2.355000e-02

Joint ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
Cons ci ratio: 2.000777e-01	ci left: 1.136853e-02	ci right 1.392715e-02	k: 378	n:30000
KS ci ratio: 2.486994e-02	ci left: 4.473219e-01	ci right 4.586205e-01	k: 13589	n:30000
HSPB9   30000 perm   4 sec   (6724 perm/sec)   p_kst 4.529667e-01   p_cons 1.260000e-02   p_joint 1.446667e-02

Joint ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
Cons ci ratio: 1.697905e-01	ci left: 1.203263e-02	ci right 1.428886e-02	k: 525	n:40000
KS ci ratio: 2.152491e-02	ci left: 4.483876e-01	ci right 4.581692e-01	k: 18131	n:40000
HSPB9   40000 perm   6 sec   (6458 perm/sec)   p_kst 4.532750e-01   p_cons 1.312500e-02   p_joint 1.667500e-02

Joint ci ratio: 1.330672e-01	ci left: 1.592371e-02	ci right 1.821286e-02	k: 852	n:50000
Cons ci ratio: 1.519242e-01	ci left: 1.214096e-02	ci right 1.415615e-02	k: 656	n:50000
KS ci ratio: 1.937408e-02	ci left: 4.457922e-01	ci right 4.545336e-01	k: 22508	n:50000
HSPB9   50000 perm   8 sec   (6257 perm/sec)   p_kst 4.501600e-01   p_cons 1.312000e-02   p_joint 1.704000e-02

Joint ci ratio: 1.394421e-01	ci left: 1.209282e-02	ci right 1.392140e-02	k: 779	n:60000
Cons ci ratio: 1.381909e-01	ci left: 1.231815e-02	ci right 1.416271e-02	k: 793	n:60000
KS ci ratio: 1.766923e-02	ci left: 4.466463e-01	ci right 4.546252e-01	k: 27038	n:60000
HSPB9   60000 perm   10 sec   (6085 perm/sec)   p_kst 4.506333e-01   p_cons 1.321667e-02   p_joint 1.298333e-02

Joint ci ratio: 1.300428e-01	ci left: 1.198036e-02	ci right 1.366038e-02	k: 896	n:70000
Cons ci ratio: 1.291703e-01	ci left: 1.214630e-02	ci right 1.383728e-02	k: 908	n:70000
KS ci ratio: 1.636158e-02	ci left: 4.468520e-01	ci right 4.542378e-01	k: 31538	n:70000
HSPB9   70000 perm   12 sec   (5929 perm/sec)   p_kst 4.505429e-01   p_cons 1.297143e-02   p_joint 1.280000e-02

Joint ci ratio: 1.218937e-01	ci left: 1.198401e-02	ci right 1.355162e-02	k: 1020	n:80000
Cons ci ratio: 1.211745e-01	ci left: 1.212950e-02	ci right 1.370611e-02	k: 1032	n:80000
KS ci ratio: 1.532363e-02	ci left: 4.464858e-01	ci right 4.533929e-01	k: 35995	n:80000
HSPB9   80000 perm   14 sec   (5780 perm/sec)   p_kst 4.499375e-01   p_cons 1.290000e-02   p_joint 1.275000e-02

Joint ci ratio: 1.149543e-01	ci left: 1.202180e-02	ci right 1.349874e-02	k: 1147	n:90000
Cons ci ratio: 1.145507e-01	ci left: 1.210817e-02	ci right 1.359015e-02	k: 1155	n:90000
KS ci ratio: 1.444255e-02	ci left: 4.468458e-01	ci right 4.533574e-01	k: 40509	n:90000
HSPB9   90000 perm   16 sec   (5651 perm/sec)   p_kst 4.501000e-01   p_cons 1.283333e-02   p_joint 1.274444e-02

Joint ci ratio: 1.086914e-01	ci left: 1.214164e-02	ci right 1.354683e-02	k: 1283	n:100000
Cons ci ratio: 1.082651e-01	ci left: 1.223896e-02	ci right 1.364950e-02	k: 1293	n:100000
KS ci ratio: 1.369811e-02	ci left: 4.471329e-01	ci right 4.533100e-01	k: 45022	n:100000
HSPB9   100000 perm   18 sec   (5522 perm/sec)   p_kst 4.502200e-01   p_cons 1.293000e-02   p_joint 1.283000e-02

Joint ci ratio: 1.039843e-01	ci left: 1.209089e-02	ci right 1.342590e-02	k: 1402	n:110000
Cons ci ratio: 1.034997e-01	ci left: 1.220604e-02	ci right 1.354710e-02	k: 1415	n:110000
KS ci ratio: 1.307271e-02	ci left: 4.468206e-01	ci right 4.527093e-01	k: 49474	n:110000
HSPB9   110000 perm   20 sec   (5409 perm/sec)   p_kst 4.497636e-01   p_cons 1.286364e-02   p_joint 1.274545e-02

Joint ci ratio: 1.085532e-01	ci left: 1.016611e-02	ci right 1.134105e-02	k: 1289	n:120000
Cons ci ratio: 9.934548e-02	ci left: 1.217162e-02	ci right 1.345209e-02	k: 1536	n:120000
KS ci ratio: 1.252221e-02	ci left: 4.467076e-01	ci right 4.523449e-01	k: 53943	n:120000
HSPB9   120000 perm   23 sec   (5298 perm/sec)   p_kst 4.495250e-01   p_cons 1.280000e-02   p_joint 1.074167e-02

Joint ci ratio: 1.035296e-01	ci left: 1.034265e-02	ci right 1.147932e-02	k: 1417	n:130000
Cons ci ratio: 9.498924e-02	ci left: 1.231616e-02	ci right 1.355186e-02	k: 1680	n:130000
KS ci ratio: 1.204636e-02	ci left: 4.461859e-01	ci right 4.516010e-01	k: 58356	n:130000
HSPB9   130000 perm   25 sec   (5194 perm/sec)   p_kst 4.488923e-01   p_cons 1.292308e-02   p_joint 1.090000e-02

Joint ci ratio: 9.083267e-02	ci left: 1.253187e-02	ci right 1.373127e-02	k: 1837	n:140000
Cons ci ratio: 9.095812e-02	ci left: 1.249696e-02	ci right 1.369476e-02	k: 1832	n:140000
KS ci ratio: 1.160833e-02	ci left: 4.462778e-01	ci right 4.514957e-01	k: 62844	n:140000
HSPB9   140000 perm   27 sec   (5095 perm/sec)   p_kst 4.488857e-01   p_cons 1.308571e-02   p_joint 1.312143e-02

Outputting figure to mutsig2_images.part000000000082/HSPB9.2_484_140000_0.44889_0.013086_0.013121.png
                gene_name: HSPB9
               theta_stop: 0.091 
                    nperm: 140000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 62 percent done.
HSPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
HSPBP1   10000 perm   1 sec   (7560 perm/sec)   p_kst 7.806000e-01   p_cons 6.587000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000082/HSPBP1.2_1108_10000_0.7806_0.6587_0.834.png
                gene_name: HSPBP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 64 percent done.
HTR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
HTR2B   10000 perm   1 sec   (7358 perm/sec)   p_kst 7.279000e-01   p_cons 4.380000e-02   p_joint 5.930000e-02

Joint ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
Cons ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
KS ci ratio: 1.679730e-02	ci left: 7.251989e-01	ci right 7.375338e-01	k: 14628	n:20000
HTR2B   20000 perm   3 sec   (6520 perm/sec)   p_kst 7.314000e-01   p_cons 4.405000e-02   p_joint 6.095000e-02

Joint ci ratio: 8.800357e-02	ci left: 5.929696e-02	ci right 6.478823e-02	k: 1860	n:30000
Cons ci ratio: 1.048707e-01	ci left: 4.216168e-02	ci right 4.686038e-02	k: 1334	n:30000
KS ci ratio: 1.375458e-02	ci left: 7.252056e-01	ci right 7.352831e-01	k: 21908	n:30000
HTR2B   30000 perm   5 sec   (6196 perm/sec)   p_kst 7.302667e-01   p_cons 4.446667e-02   p_joint 6.200000e-02

Joint ci ratio: 7.602324e-02	ci left: 5.995072e-02	ci right 6.471306e-02	k: 2492	n:40000
Cons ci ratio: 9.060815e-02	ci left: 4.267108e-02	ci right 4.674535e-02	k: 1787	n:40000
KS ci ratio: 1.191084e-02	ci left: 7.259217e-01	ci right 7.346449e-01	k: 29212	n:40000
HTR2B   40000 perm   7 sec   (5990 perm/sec)   p_kst 7.303000e-01   p_cons 4.467500e-02   p_joint 6.230000e-02

Outputting figure to mutsig2_images.part000000000082/HTR2B.2_1458_40000_0.7303_0.044675_0.0623.png
                gene_name: HTR2B
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 66 percent done.
HTR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
HTR3A   10000 perm   1 sec   (7293 perm/sec)   p_kst 8.360000e-01   p_cons 8.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTR3A.2_1609_10000_0.836_0.8424_1.png
                gene_name: HTR3A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
HTR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
HTR3B   10000 perm   1 sec   (7444 perm/sec)   p_kst 7.803000e-01   p_cons 1.769000e-01   p_joint 2.949000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3B.2_1362_10000_0.7803_0.1769_0.2949.png
                gene_name: HTR3B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 70 percent done.
HTR3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.418922e-02	ci left: 5.581224e-01	ci right 5.776381e-01	k: 5679	n:10000
Cons ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
KS ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
HTR3D   10000 perm   1 sec   (7272 perm/sec)   p_kst 6.295000e-01   p_cons 2.605000e-01   p_joint 5.679000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3D.2_1567_10000_0.6295_0.2605_0.5679.png
                gene_name: HTR3D
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 71 percent done.
HTR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
HTR3E   10000 perm   1 sec   (7651 perm/sec)   p_kst 7.302000e-01   p_cons 2.206000e-01   p_joint 5.829000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3E.2_1448_10000_0.7302_0.2206_0.5829.png
                gene_name: HTR3E
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 73 percent done.
HUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
Cons ci ratio: 1.476486e-02	ci left: 8.691762e-01	ci right 8.822040e-01	k: 8758	n:10000
KS ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
HUS1   10000 perm   1 sec   (7760 perm/sec)   p_kst 4.738000e-01   p_cons 8.758000e-01   p_joint 6.500000e-01

Outputting figure to mutsig2_images.part000000000082/HUS1.2_875_10000_0.4738_0.8758_0.65.png
                gene_name: HUS1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 75 percent done.
HUS1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
HUS1B   10000 perm   1 sec   (7767 perm/sec)   p_kst 1.564000e-01   p_cons 2.092000e-01   p_joint 1.190000e-01

Joint ci ratio: 5.012930e-02	ci left: 2.282456e-01	ci right 2.400318e-01	k: 4682	n:20000
Cons ci ratio: 5.151684e-02	ci left: 2.186831e-01	ci right 2.302971e-01	k: 4489	n:20000
KS ci ratio: 6.484205e-02	ci left: 1.494671e-01	ci right 1.595335e-01	k: 3089	n:20000
HUS1B   20000 perm   3 sec   (6883 perm/sec)   p_kst 1.544500e-01   p_cons 2.244500e-01   p_joint 2.341000e-01

Outputting figure to mutsig2_images.part000000000082/HUS1B.2_841_20000_0.15445_0.22445_0.2341.png
                gene_name: HUS1B
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
HYAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
KS ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
HYAL3   10000 perm   1 sec   (7507 perm/sec)   p_kst 8.077000e-01   p_cons 1.032000e-01   p_joint 1.629000e-01

Joint ci ratio: 6.242218e-02	ci left: 1.595342e-01	ci right 1.698635e-01	k: 3293	n:20000
Cons ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
KS ci ratio: 1.368395e-02	ci left: 7.984799e-01	ci right 8.095316e-01	k: 16081	n:20000
HYAL3   20000 perm   3 sec   (6655 perm/sec)   p_kst 8.040500e-01   p_cons 9.455000e-02   p_joint 1.646500e-01

Outputting figure to mutsig2_images.part000000000082/HYAL3.2_1266_20000_0.80405_0.09455_0.16465.png
                gene_name: HYAL3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
IAPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
IAPP   10000 perm   1 sec   (8473 perm/sec)   p_kst 3.371000e-01   p_cons 8.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IAPP.2_278_10000_0.3371_0.8639_1.png
                gene_name: IAPP
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
IBSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.960686e-02	ci left: 7.919218e-01	ci right 8.077031e-01	k: 7999	n:10000
Cons ci ratio: 2.629179e-02	ci left: 6.805286e-01	ci right 6.987608e-01	k: 6897	n:10000
KS ci ratio: 2.513674e-02	ci left: 6.995839e-01	ci right 7.174944e-01	k: 7086	n:10000
IBSP   10000 perm   1 sec   (7661 perm/sec)   p_kst 7.086000e-01   p_cons 6.897000e-01   p_joint 7.999000e-01

Outputting figure to mutsig2_images.part000000000082/IBSP.2_978_10000_0.7086_0.6897_0.7999.png
                gene_name: IBSP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 82 percent done.
ICAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
Cons ci ratio: 3.049740e-02	ci left: 6.133161e-01	ci right 6.324122e-01	k: 6229	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
ICAM2   10000 perm   1 sec   (7732 perm/sec)   p_kst 3.080000e-01   p_cons 6.229000e-01   p_joint 6.117000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM2.2_844_10000_0.308_0.6229_0.6117.png
                gene_name: ICAM2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
ICAM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
ICAM3   10000 perm   1 sec   (7221 perm/sec)   p_kst 6.960000e-01   p_cons 2.299000e-01   p_joint 2.496000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM3.2_1672_10000_0.696_0.2299_0.2496.png
                gene_name: ICAM3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 86 percent done.
ICOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
ICOS   10000 perm   1 sec   (7507 perm/sec)   p_kst 5.871000e-01   p_cons 2.174000e-01   p_joint 1.982000e-01

Outputting figure to mutsig2_images.part000000000082/ICOS.2_620_10000_0.5871_0.2174_0.1982.png
                gene_name: ICOS
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 88 percent done.
IDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
KS ci ratio: 1.446489e-02	ci left: 8.736745e-01	ci right 8.865032e-01	k: 8802	n:10000
IDH1   10000 perm   1 sec   (7415 perm/sec)   p_kst 8.802000e-01   p_cons 3.448000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH1.2_1277_10000_0.8802_0.3448_1.png
                gene_name: IDH1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
IDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
Cons ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
KS ci ratio: 2.629179e-02	ci left: 6.805286e-01	ci right 6.987608e-01	k: 6897	n:10000
IDH2   10000 perm   1 sec   (7329 perm/sec)   p_kst 6.897000e-01   p_cons 1.363000e-01   p_joint 9.377000e-01

Outputting figure to mutsig2_images.part000000000082/IDH2.2_1403_10000_0.6897_0.1363_0.9377.png
                gene_name: IDH2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
IDH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
IDH3A   10000 perm   1 sec   (7558 perm/sec)   p_kst 3.849000e-01   p_cons 6.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH3A.2_1145_10000_0.3849_0.6376_1.png
                gene_name: IDH3A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
IDH3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
KS ci ratio: 4.635899e-03	ci left: 9.838246e-01	ci right 9.884858e-01	k: 9863	n:10000
IDH3B   10000 perm   1 sec   (7363 perm/sec)   p_kst 9.863000e-01   p_cons 9.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH3B.2_1366_10000_0.9863_0.9718_1.png
                gene_name: IDH3B
               theta_stop: 0.0067 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
IDO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
Cons ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
IDO2   10000 perm   1 sec   (7660 perm/sec)   p_kst 7.084000e-01   p_cons 7.922000e-01   p_joint 8.023000e-01

Outputting figure to mutsig2_images.part000000000082/IDO2.2_1307_10000_0.7084_0.7922_0.8023.png
                gene_name: IDO2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 96 percent done.
IDUA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
KS ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
IDUA   10000 perm   1 sec   (7119 perm/sec)   p_kst 8.540000e-01   p_cons 8.199000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDUA.2_2018_10000_0.854_0.8199_1.png
                gene_name: IDUA
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
IFFO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
Cons ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
KS ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
IFFO1   10000 perm   1 sec   (7062 perm/sec)   p_kst 5.139000e-01   p_cons 9.459000e-01   p_joint 7.844000e-01

Outputting figure to mutsig2_images.part000000000082/IFFO1.2_1732_10000_0.5139_0.9459_0.7844.png
                gene_name: IFFO1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000082
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 82 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1546>
Subject: Job 4422060: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1546>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000083> was used as the working directory.
Started at Wed Oct 24 17:55:00 2012
Results reported at Wed Oct 24 18:06:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000083.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000083.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 83  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000083.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    812.92 sec.
    Max Memory :      5391 MB
    Max Swap   :      7704 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
83
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 83
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 83: processing genes 7420 - 7509
Calculating significance of each gene.
Using projection method.
7420	IFI27L1	1
7421	IFI27L2	1
7422	IFI30	1
7423	IFI35	3.853905e-01
7424	IFI44	8.830210e-01
7425	IFI44L	3.062361e-02
7426	IFI6	4.598941e-01
7427	IFIH1	4.836652e-01
7428	IFIT1	1
7429	IFIT1B	1
7430	IFIT2	1
7431	IFIT3	1
7432	IFIT5	8.207887e-01
7433	IFITM1	1
7434	IFITM2	1
7435	IFITM3	3.719884e-01
7436	IFITM5	7.542738e-02
7437	IFLTD1	1.676490e-01
7438	IFNA1	1
7439	IFNA10	4.424629e-02
7440	IFNA13	1
7441	IFNA14	9.980313e-02
7442	IFNA16	4.398861e-02
7443	IFNA17	8.779594e-02
7444	IFNA2	7.066699e-02
7445	IFNA21	1
7446	IFNA4	4.443804e-01
7447	IFNA5	6.002076e-01
7448	IFNA6	2.164931e-01
7449	IFNA7	2.107676e-02
7450	IFNA8	6.480117e-01
7451	IFNAR1	1
7452	IFNAR2	7.097407e-01
7453	IFNB1	1.742774e-02
7454	IFNE	1
7455	IFNG	8.943536e-03
7456	IFNGR1	7.238660e-01
7457	IFNGR2	2.990681e-01
7458	IFNK	1
7459	IFNW1	6.725404e-01
7460	IFRD1	8.667632e-01
7461	IFRD2	8.165066e-01
7462	IFT122	9.681921e-01
7463	IFT140	9.998246e-01
7464	IFT172	9.894122e-01
7465	IFT20	4.887441e-01
7466	IFT27	1
7467	IFT46	7.720204e-01
7468	IFT52	4.287695e-01
7469	IFT57	8.003330e-01
7470	IFT74	7.875385e-01
7471	IFT80	1
7472	IFT81	4.673808e-01
7473	IFT88	3.326128e-01
7474	IGBP1	5.328545e-01
7475	IGDCC3	6.763295e-01
7476	IGDCC4	7.587491e-01
7477	IGF1	1.825488e-02
7478	IGF1R	9.970866e-01
7479	IGF2	5.964687e-01
7480	IGF2BP1	1
7481	IGF2BP2	8.619802e-01
7482	IGF2BP3	5.282725e-01
7483	IGF2R	9.769479e-01
7484	IGFALS	1
7485	IGFBP1	1.227093e-01
7486	IGFBP2	6.123969e-01
7487	IGFBP3	3.101090e-01
7488	IGFBP4	4.331473e-01
7489	IGFBP5	1.297251e-01
7490	IGFBP6	1
7491	IGFBP7	1
7492	IGFBPL1	5.466051e-01
7493	IGFL1	4.093748e-01
7494	IGFL2	9.398159e-02
7495	IGFL3	1
7496	IGFL4	1
7497	IGHMBP2	7.044847e-01
7498	IGJ	4.561738e-01
7499	IGLL1	3.795392e-01
7500	IGLL5	1
7501	IGLON5	3.993611e-01
7502	IGSF1	9.770203e-01
7503	IGSF10	9.971353e-01
7504	IGSF11	8.264352e-01
7505	IGSF21	6.193961e-01
7506	IGSF22	5.386638e-01
7507	IGSF3	1
7508	IGSF5	4.064574e-01
7509	IGSF6	5.245903e-01
Done

Running MutSig 2:
Scatter job 83: processing genes 7420 - 7509
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGSF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
Cons ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
IGSF10   10000 perm   4 sec   (2721 perm/sec)   p_kst 1.939000e-01   p_cons 5.188000e-01   p_joint 3.024000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF10.20_7944_10000_0.1939_0.5188_0.3024.png
                gene_name: IGSF10
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
IGSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.205944e-02	ci left: 9.079222e-01	ci right 9.190356e-01	k: 9136	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
IGSF1   10000 perm   3 sec   (3826 perm/sec)   p_kst 1   p_cons 9.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IGSF1.15_4164_10000_1_0.9136_1.png
                gene_name: IGSF1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
IGSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
Cons ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
KS ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
IGSF3   10000 perm   2 sec   (4180 perm/sec)   p_kst 3.957000e-01   p_cons 2.370000e-02   p_joint 5.660000e-02

Joint ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
Cons ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
KS ci ratio: 3.550393e-02	ci left: 3.719207e-01	ci right 3.854146e-01	k: 7573	n:20000
IGSF3   20000 perm   5 sec   (3724 perm/sec)   p_kst 3.786500e-01   p_cons 2.175000e-02   p_joint 3.980000e-02

Joint ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
Cons ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
KS ci ratio: 2.890478e-02	ci left: 3.745358e-01	ci right 3.855541e-01	k: 11401	n:30000
IGSF3   30000 perm   8 sec   (3563 perm/sec)   p_kst 3.800333e-01   p_cons 2.233333e-02   p_joint 6.520000e-02

Joint ci ratio: 8.422143e-02	ci left: 4.920721e-02	ci right 5.355821e-02	k: 2054	n:40000
Cons ci ratio: 1.296295e-01	ci left: 2.089945e-02	ci right 2.382047e-02	k: 893	n:40000
KS ci ratio: 2.506371e-02	ci left: 3.746910e-01	ci right 3.842265e-01	k: 15178	n:40000
IGSF3   40000 perm   12 sec   (3465 perm/sec)   p_kst 3.794500e-01   p_cons 2.232500e-02   p_joint 5.135000e-02

Joint ci ratio: 8.751299e-02	ci left: 3.688915e-02	ci right 4.028469e-02	k: 1928	n:50000
Cons ci ratio: 1.122254e-01	ci left: 2.248166e-02	ci right 2.517402e-02	k: 1190	n:50000
KS ci ratio: 2.233482e-02	ci left: 3.769399e-01	ci right 3.854739e-01	k: 19060	n:50000
IGSF3   50000 perm   15 sec   (3388 perm/sec)   p_kst 3.812000e-01   p_cons 2.380000e-02   p_joint 3.856000e-02

Joint ci ratio: 8.057495e-02	ci left: 3.641881e-02	ci right 3.949275e-02	k: 2276	n:60000
Cons ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
KS ci ratio: 2.039759e-02	ci left: 3.771117e-01	ci right 3.848998e-01	k: 22860	n:60000
IGSF3   60000 perm   18 sec   (3333 perm/sec)   p_kst 3.810000e-01   p_cons 2.331667e-02   p_joint 3.793333e-02

Joint ci ratio: 6.960711e-02	ci left: 4.183215e-02	ci right 4.486299e-02	k: 3033	n:70000
Cons ci ratio: 9.659520e-02	ci left: 2.187429e-02	ci right 2.410835e-02	k: 1608	n:70000
KS ci ratio: 1.891551e-02	ci left: 3.766303e-01	ci right 3.838368e-01	k: 26616	n:70000
IGSF3   70000 perm   21 sec   (3274 perm/sec)   p_kst 3.802286e-01   p_cons 2.297143e-02   p_joint 4.332857e-02

Outputting figure to mutsig2_images.part000000000083/IGSF3.14_3689_70000_0.38023_0.022971_0.043329.png
                gene_name: IGSF3
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 6 percent done.
IGF2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.709308e-02	ci left: 3.995407e-01	ci right 4.189122e-01	k: 4092	n:10000
Cons ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
KS ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
IGF2R   10000 perm   3 sec   (2922 perm/sec)   p_kst 3.910000e-01   p_cons 2.281000e-01   p_joint 4.092000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2R.13_7668_10000_0.391_0.2281_0.4092.png
                gene_name: IGF2R
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 8 percent done.
IGDCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
KS ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
IGDCC4   10000 perm   3 sec   (3658 perm/sec)   p_kst 5.245000e-01   p_cons 1.628000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC4.12_3833_10000_0.5245_0.1628_0.2976.png
                gene_name: IGDCC4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 10 percent done.
IGSF22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
Cons ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
KS ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
IGSF22   10000 perm   3 sec   (3670 perm/sec)   p_kst 3.168000e-01   p_cons 5.553000e-01   p_joint 5.512000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF22.11_4069_10000_0.3168_0.5553_0.5512.png
                gene_name: IGSF22
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 12 percent done.
IGF1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
Cons ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
KS ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
IGF1R   10000 perm   2 sec   (4061 perm/sec)   p_kst 3.840000e-01   p_cons 2.791000e-01   p_joint 3.832000e-01

Outputting figure to mutsig2_images.part000000000083/IGF1R.10_4188_10000_0.384_0.2791_0.3832.png
                gene_name: IGF1R
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 14 percent done.
IGF2BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
Cons ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
IGF2BP3   10000 perm   2 sec   (5003 perm/sec)   p_kst 3.226000e-01   p_cons 3.131000e-01   p_joint 3.749000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP3.8_1800_10000_0.3226_0.3131_0.3749.png
                gene_name: IGF2BP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 16 percent done.
IFI44L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
Cons ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
KS ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
IFI44L   10000 perm   2 sec   (5334 perm/sec)   p_kst 3.266000e-01   p_cons 2.433000e-01   p_joint 2.951000e-01

Outputting figure to mutsig2_images.part000000000083/IFI44L.7_1391_10000_0.3266_0.2433_0.2951.png
                gene_name: IFI44L
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 18 percent done.
IGF2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
KS ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
IGF2BP1   10000 perm   2 sec   (5751 perm/sec)   p_kst 1.322000e-01   p_cons 3.116000e-01   p_joint 1.743000e-01

Joint ci ratio: 6.294913e-02	ci left: 1.572635e-01	ci right 1.675348e-01	k: 3247	n:20000
Cons ci ratio: 4.076185e-02	ci left: 3.097080e-01	ci right 3.226454e-01	k: 6323	n:20000
KS ci ratio: 7.135872e-02	ci left: 1.264021e-01	ci right 1.358055e-01	k: 2621	n:20000
IGF2BP1   20000 perm   4 sec   (5056 perm/sec)   p_kst 1.310500e-01   p_cons 3.161500e-01   p_joint 1.623500e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP1.7_1794_20000_0.13105_0.31615_0.16235.png
                gene_name: IGF2BP1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
IFIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
IFIH1   10000 perm   2 sec   (4713 perm/sec)   p_kst 3.510000e-02   p_cons 5.703000e-01   p_joint 8.140000e-02

Joint ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
Cons ci ratio: 2.474080e-02	ci left: 5.496321e-01	ci right 5.634514e-01	k: 11131	n:20000
KS ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
IFIH1   20000 perm   5 sec   (4206 perm/sec)   p_kst 3.490000e-02   p_cons 5.565500e-01   p_joint 9.235000e-02

Joint ci ratio: 8.762768e-02	ci left: 5.978667e-02	ci right 6.529843e-02	k: 1875	n:30000
Cons ci ratio: 1.935998e-02	ci left: 5.718197e-01	ci right 5.830319e-01	k: 17323	n:30000
KS ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
IFIH1   30000 perm   7 sec   (4015 perm/sec)   p_kst 3.470000e-02   p_cons 5.774333e-01   p_joint 6.250000e-02

Joint ci ratio: 7.413819e-02	ci left: 6.289803e-02	ci right 6.776530e-02	k: 2612	n:40000
Cons ci ratio: 1.679677e-02	ci left: 5.716899e-01	ci right 5.813989e-01	k: 23062	n:40000
KS ci ratio: 1.026877e-01	ci left: 3.334221e-02	ci right 3.697568e-02	k: 1405	n:40000
IFIH1   40000 perm   10 sec   (3883 perm/sec)   p_kst 3.512500e-02   p_cons 5.765500e-01   p_joint 6.530000e-02

Joint ci ratio: 6.455527e-02	ci left: 6.645858e-02	ci right 7.091165e-02	k: 3433	n:50000
Cons ci ratio: 1.496796e-02	ci left: 5.740171e-01	ci right 5.826938e-01	k: 28918	n:50000
KS ci ratio: 9.126982e-02	ci left: 3.395377e-02	ci right 3.722043e-02	k: 1778	n:50000
IFIH1   50000 perm   13 sec   (3784 perm/sec)   p_kst 3.556000e-02   p_cons 5.783600e-01   p_joint 6.866000e-02

Outputting figure to mutsig2_images.part000000000083/IFIH1.6_3142_50000_0.03556_0.57836_0.06866.png
                gene_name: IFIH1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 22 percent done.
IFT122
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
Cons ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
KS ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
IFT122   10000 perm   2 sec   (4411 perm/sec)   p_kst 7.977000e-01   p_cons 2.816000e-01   p_joint 5.620000e-01

Outputting figure to mutsig2_images.part000000000083/IFT122.6_4006_10000_0.7977_0.2816_0.562.png
                gene_name: IFT122
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 24 percent done.
IFT172
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
KS ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
IFT172   10000 perm   3 sec   (3707 perm/sec)   p_kst 9.050000e-02   p_cons 5.231000e-01   p_joint 2.226000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 2.551196e-02	ci left: 5.344136e-01	ci right 5.482743e-01	k: 10827	n:20000
KS ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
IFT172   20000 perm   6 sec   (3428 perm/sec)   p_kst 9.295000e-02   p_cons 5.413500e-01   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000083/IFT172.6_5442_20000_0.09295_0.54135_0.19825.png
                gene_name: IFT172
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 26 percent done.
IFT88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
Cons ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
KS ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
IFT88   10000 perm   2 sec   (4794 perm/sec)   p_kst 6.283000e-01   p_cons 9.990000e-02   p_joint 3.444000e-01

Joint ci ratio: 4.379606e-02	ci left: 2.796941e-01	ci right 2.922682e-01	k: 5719	n:20000
Cons ci ratio: 8.373686e-02	ci left: 9.459997e-02	ci right 1.029171e-01	k: 1974	n:20000
KS ci ratio: 2.115710e-02	ci left: 6.251220e-01	ci right 6.385397e-01	k: 12637	n:20000
IFT88   20000 perm   5 sec   (4311 perm/sec)   p_kst 6.318500e-01   p_cons 9.870000e-02   p_joint 2.859500e-01

Outputting figure to mutsig2_images.part000000000083/IFT88.6_2606_20000_0.63185_0.0987_0.28595.png
                gene_name: IFT88
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
IGDCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
Cons ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
KS ci ratio: 3.295165e-02	ci left: 5.761720e-01	ci right 5.955779e-01	k: 5859	n:10000
IGDCC3   10000 perm   2 sec   (4534 perm/sec)   p_kst 5.859000e-01   p_cons 9.740000e-02   p_joint 2.462000e-01

Joint ci ratio: 4.314563e-02	ci left: 2.858035e-01	ci right 2.984570e-01	k: 5842	n:20000
Cons ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
KS ci ratio: 2.364424e-02	ci left: 5.719210e-01	ci right 5.856561e-01	k: 11576	n:20000
IGDCC3   20000 perm   5 sec   (4261 perm/sec)   p_kst 5.788000e-01   p_cons 9.580000e-02   p_joint 2.921000e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC3.6_2501_20000_0.5788_0.0958_0.2921.png
                gene_name: IGDCC3
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 30 percent done.
IGHMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
KS ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
IGHMBP2   10000 perm   2 sec   (4573 perm/sec)   p_kst 1.448000e-01   p_cons 4.690000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
Cons ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
KS ci ratio: 6.747077e-02	ci left: 1.395063e-01	ci right 1.492974e-01	k: 2887	n:20000
IGHMBP2   20000 perm   5 sec   (4075 perm/sec)   p_kst 1.443500e-01   p_cons 4.165000e-02   p_joint 6.355000e-02

Joint ci ratio: 1.025218e-01	ci left: 4.407958e-02	ci right 4.887540e-02	k: 1393	n:30000
Cons ci ratio: 1.013455e-01	ci left: 4.508777e-02	ci right 4.993367e-02	k: 1424	n:30000
KS ci ratio: 5.497136e-02	ci left: 1.409347e-01	ci right 1.489342e-01	k: 4347	n:30000
IGHMBP2   30000 perm   8 sec   (3846 perm/sec)   p_kst 1.449000e-01   p_cons 4.746667e-02   p_joint 4.643333e-02

Joint ci ratio: 7.698277e-02	ci left: 5.852675e-02	ci right 6.323725e-02	k: 2434	n:40000
Cons ci ratio: 8.786528e-02	ci left: 4.531355e-02	ci right 4.950247e-02	k: 1895	n:40000
KS ci ratio: 4.737916e-02	ci left: 1.426519e-01	ci right 1.495995e-01	k: 5844	n:40000
IGHMBP2   40000 perm   11 sec   (3737 perm/sec)   p_kst 1.461000e-01   p_cons 4.737500e-02   p_joint 6.085000e-02

Outputting figure to mutsig2_images.part000000000083/IGHMBP2.6_3042_40000_0.1461_0.047375_0.06085.png
                gene_name: IGHMBP2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 32 percent done.
IGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
IGF1   10000 perm   2 sec   (5472 perm/sec)   p_kst 8.089000e-01   p_cons 4.722000e-01   p_joint 9.034000e-01

Outputting figure to mutsig2_images.part000000000083/IGF1.5_687_10000_0.8089_0.4722_0.9034.png
                gene_name: IGF1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 34 percent done.
IGSF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
Cons ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
KS ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
IGSF11   10000 perm   2 sec   (5284 perm/sec)   p_kst 6.432000e-01   p_cons 9.134000e-01   p_joint 8.431000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF11.5_1377_10000_0.6432_0.9134_0.8431.png
                gene_name: IGSF11
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 36 percent done.
IGSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
IGSF21   10000 perm   2 sec   (4982 perm/sec)   p_kst 4.279000e-01   p_cons 8.804000e-01   p_joint 6.136000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF21.5_1444_10000_0.4279_0.8804_0.6136.png
                gene_name: IGSF21
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 38 percent done.
IFIT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
KS ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
IFIT1B   10000 perm   2 sec   (5211 perm/sec)   p_kst 8.492000e-01   p_cons 7.940000e-02   p_joint 1.952000e-01

Joint ci ratio: 4.675028e-02	ci left: 2.539808e-01	ci right 2.661890e-01	k: 5201	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 1.176559e-02	ci left: 8.422902e-01	ci right 8.523086e-01	k: 16947	n:20000
IFIT1B   20000 perm   4 sec   (4695 perm/sec)   p_kst 8.473500e-01   p_cons 7.280000e-02   p_joint 2.600500e-01

Outputting figure to mutsig2_images.part000000000083/IFIT1B.4_1433_20000_0.84735_0.0728_0.26005.png
                gene_name: IFIT1B
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 40 percent done.
IFLTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
Cons ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
IFLTD1   10000 perm   2 sec   (6473 perm/sec)   p_kst 5.131000e-01   p_cons 7.911000e-01   p_joint 6.660000e-01

Outputting figure to mutsig2_images.part000000000083/IFLTD1.4_1354_10000_0.5131_0.7911_0.666.png
                gene_name: IFLTD1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 42 percent done.
IFNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
Cons ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
KS ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
IFNA10   10000 perm   2 sec   (6487 perm/sec)   p_kst 1.696000e-01   p_cons 7.890000e-01   p_joint 3.416000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA10.4_574_10000_0.1696_0.789_0.3416.png
                gene_name: IFNA10
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 44 percent done.
IFNA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
IFNA14   10000 perm   2 sec   (6188 perm/sec)   p_kst 3.106000e-01   p_cons 8.734000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA14.4_574_10000_0.3106_0.8734_0.4533.png
                gene_name: IFNA14
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 46 percent done.
IFNA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
IFNA7   10000 perm   2 sec   (5782 perm/sec)   p_kst 1.830000e-02   p_cons 6.773000e-01   p_joint 1.134000e-01

Joint ci ratio: 1.086079e-01	ci left: 5.781956e-02	ci right 6.450873e-02	k: 1222	n:20000
Cons ci ratio: 1.906222e-02	ci left: 6.723786e-01	ci right 6.853694e-01	k: 13578	n:20000
KS ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
IFNA7   20000 perm   4 sec   (5117 perm/sec)   p_kst 1.790000e-02   p_cons 6.789000e-01   p_joint 6.110000e-02

Joint ci ratio: 9.312609e-02	ci left: 5.316386e-02	ci right 5.838925e-02	k: 1672	n:30000
Cons ci ratio: 1.550377e-02	ci left: 6.752901e-01	ci right 6.858749e-01	k: 20418	n:30000
KS ci ratio: 1.709067e-01	ci left: 1.575899e-02	ci right 1.873556e-02	k: 516	n:30000
IFNA7   30000 perm   6 sec   (4847 perm/sec)   p_kst 1.720000e-02   p_cons 6.806000e-01   p_joint 5.573333e-02

Joint ci ratio: 9.190709e-02	ci left: 4.149729e-02	ci right 4.551932e-02	k: 1739	n:40000
Cons ci ratio: 1.341052e-02	ci left: 6.765324e-01	ci right 6.856913e-01	k: 27245	n:40000
KS ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
IFNA7   40000 perm   9 sec   (4672 perm/sec)   p_kst 1.907500e-02   p_cons 6.811250e-01   p_joint 4.347500e-02

Joint ci ratio: 8.341452e-02	ci left: 4.053282e-02	ci right 4.408057e-02	k: 2114	n:50000
Cons ci ratio: 1.202309e-02	ci left: 6.759912e-01	ci right 6.841879e-01	k: 34005	n:50000
KS ci ratio: 1.263056e-01	ci left: 1.770504e-02	ci right 2.011128e-02	k: 944	n:50000
IFNA7   50000 perm   11 sec   (4542 perm/sec)   p_kst 1.888000e-02   p_cons 6.801000e-01   p_joint 4.228000e-02

Joint ci ratio: 7.180826e-02	ci left: 4.561504e-02	ci right 4.902892e-02	k: 2838	n:60000
Cons ci ratio: 1.096420e-02	ci left: 6.768022e-01	ci right 6.842803e-01	k: 40833	n:60000
KS ci ratio: 1.160859e-01	ci left: 1.756631e-02	ci right 1.974726e-02	k: 1118	n:60000
IFNA7   60000 perm   14 sec   (4423 perm/sec)   p_kst 1.863333e-02   p_cons 6.805500e-01   p_joint 4.730000e-02

Joint ci ratio: 5.831226e-02	ci left: 5.887177e-02	ci right 6.242190e-02	k: 4244	n:70000
Cons ci ratio: 1.014906e-02	ci left: 6.771602e-01	ci right 6.840820e-01	k: 47644	n:70000
KS ci ratio: 1.071615e-01	ci left: 1.775106e-02	ci right 1.977482e-02	k: 1312	n:70000
IFNA7   70000 perm   16 sec   (4329 perm/sec)   p_kst 1.874286e-02   p_cons 6.806286e-01   p_joint 6.062857e-02

Joint ci ratio: 6.153656e-02	ci left: 4.678752e-02	ci right 4.977035e-02	k: 3861	n:80000
Cons ci ratio: 9.509228e-03	ci left: 6.766671e-01	ci right 6.831449e-01	k: 54393	n:80000
KS ci ratio: 1.004650e-01	ci left: 1.773596e-02	ci right 1.962417e-02	k: 1493	n:80000
IFNA7   80000 perm   19 sec   (4214 perm/sec)   p_kst 1.866250e-02   p_cons 6.799125e-01   p_joint 4.826250e-02

Joint ci ratio: 5.849809e-02	ci left: 4.613035e-02	ci right 4.892113e-02	k: 4276	n:90000
Cons ci ratio: 8.973205e-03	ci left: 6.764733e-01	ci right 6.825818e-01	k: 61158	n:90000
KS ci ratio: 9.793775e-02	ci left: 1.663167e-02	ci right 1.835519e-02	k: 1573	n:90000
IFNA7   90000 perm   22 sec   (4138 perm/sec)   p_kst 1.747778e-02   p_cons 6.795333e-01   p_joint 4.751111e-02

Outputting figure to mutsig2_images.part000000000083/IFNA7.4_574_90000_0.017478_0.67953_0.047511.png
                gene_name: IFNA7
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 48 percent done.
IFNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
Cons ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
IFNB1   10000 perm   2 sec   (6070 perm/sec)   p_kst 3.198000e-01   p_cons 6.136000e-01   p_joint 5.794000e-01

Outputting figure to mutsig2_images.part000000000083/IFNB1.4_568_10000_0.3198_0.6136_0.5794.png
                gene_name: IFNB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 50 percent done.
IFNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
KS ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
IFNG   10000 perm   2 sec   (6158 perm/sec)   p_kst 7.238000e-01   p_cons 5.156000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFNG.4_517_10000_0.7238_0.5156_1.png
                gene_name: IFNG
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
IFT81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
IFT81   10000 perm   2 sec   (5394 perm/sec)   p_kst 7.881000e-01   p_cons 8.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFT81.4_2215_10000_0.7881_0.8749_1.png
                gene_name: IFT81
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
IFIT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
IFIT5   10000 perm   2 sec   (5971 perm/sec)   p_kst 2.837000e-01   p_cons 4.187000e-01   p_joint 5.565000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT5.3_1457_10000_0.2837_0.4187_0.5565.png
                gene_name: IFIT5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 56 percent done.
IFNA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
Cons ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
KS ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
IFNA16   10000 perm   2 sec   (6636 perm/sec)   p_kst 9.723000e-01   p_cons 6.231000e-01   p_joint 8.035000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA16.3_574_10000_0.9723_0.6231_0.8035.png
                gene_name: IFNA16
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 58 percent done.
IFNA17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.499931e-03	ci left: 9.399353e-01	ci right 9.490036e-01	k: 9446	n:10000
KS ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
IFNA17   10000 perm   2 sec   (6345 perm/sec)   p_kst 6.788000e-01   p_cons 9.446000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFNA17.3_574_10000_0.6788_0.9446_1.png
                gene_name: IFNA17
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
IFNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
Cons ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
KS ci ratio: 2.762096e-02	ci left: 6.588734e-01	ci right 6.774286e-01	k: 6682	n:10000
IFNA2   10000 perm   2 sec   (6370 perm/sec)   p_kst 6.682000e-01   p_cons 1.442000e-01   p_joint 2.584000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA2.3_571_10000_0.6682_0.1442_0.2584.png
                gene_name: IFNA2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 62 percent done.
IFNA21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
Cons ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
IFNA21   10000 perm   2 sec   (6408 perm/sec)   p_kst 8.290000e-02   p_cons 4.735000e-01   p_joint 2.512000e-01

Joint ci ratio: 6.216256e-02	ci left: 1.606697e-01	ci right 1.710277e-01	k: 3316	n:20000
Cons ci ratio: 3.053027e-02	ci left: 4.448852e-01	ci right 4.587288e-01	k: 9036	n:20000
KS ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
IFNA21   20000 perm   4 sec   (5540 perm/sec)   p_kst 8.115000e-02   p_cons 4.518000e-01   p_joint 1.658000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA21.3_574_20000_0.08115_0.4518_0.1658.png
                gene_name: IFNA21
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 64 percent done.
IFNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
Cons ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
IFNA4   10000 perm   2 sec   (6478 perm/sec)   p_kst 1.994000e-01   p_cons 5.834000e-01   p_joint 3.736000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA4.3_574_10000_0.1994_0.5834_0.3736.png
                gene_name: IFNA4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 66 percent done.
IFNGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
Cons ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
KS ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
IFNGR1   10000 perm   2 sec   (5784 perm/sec)   p_kst 7.147000e-01   p_cons 2.580000e-02   p_joint 2.194000e-01

Joint ci ratio: 6.596943e-02	ci left: 1.450775e-01	ci right 1.550245e-01	k: 3000	n:20000
Cons ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
KS ci ratio: 1.757057e-02	ci left: 7.070273e-01	ci right 7.196106e-01	k: 14267	n:20000
IFNGR1   20000 perm   4 sec   (5093 perm/sec)   p_kst 7.133500e-01   p_cons 2.875000e-02   p_joint 1.500000e-01

Joint ci ratio: 4.016383e-02	ci left: 2.361358e-01	ci right 2.458477e-01	k: 7229	n:30000
Cons ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
KS ci ratio: 1.436220e-02	ci left: 7.077435e-01	ci right 7.180152e-01	k: 21387	n:30000
IFNGR1   30000 perm   6 sec   (4837 perm/sec)   p_kst 7.129000e-01   p_cons 2.900000e-02   p_joint 2.409667e-01

Joint ci ratio: 3.820528e-02	ci left: 2.043540e-01	ci right 2.123384e-01	k: 8333	n:40000
Cons ci ratio: 1.137667e-01	ci left: 2.718282e-02	ci right 3.048606e-02	k: 1152	n:40000
KS ci ratio: 1.240922e-02	ci left: 7.093930e-01	ci right 7.182760e-01	k: 28554	n:40000
IFNGR1   40000 perm   9 sec   (4675 perm/sec)   p_kst 7.138500e-01   p_cons 2.880000e-02   p_joint 2.083250e-01

Joint ci ratio: 3.653139e-02	ci left: 1.837494e-01	ci right 1.906069e-01	k: 9358	n:50000
Cons ci ratio: 1.021308e-01	ci left: 2.715643e-02	ci right 3.009863e-02	k: 1430	n:50000
KS ci ratio: 1.109781e-02	ci left: 7.099163e-01	ci right 7.178588e-01	k: 35695	n:50000
IFNGR1   50000 perm   11 sec   (4541 perm/sec)   p_kst 7.139000e-01   p_cons 2.860000e-02   p_joint 1.871600e-01

Joint ci ratio: 3.665669e-02	ci left: 1.571409e-01	ci right 1.630253e-01	k: 9604	n:60000
Cons ci ratio: 9.437575e-02	ci left: 2.662937e-02	ci right 2.928322e-02	k: 1676	n:60000
KS ci ratio: 1.009659e-02	ci left: 7.116537e-01	ci right 7.188921e-01	k: 42917	n:60000
IFNGR1   60000 perm   14 sec   (4425 perm/sec)   p_kst 7.152833e-01   p_cons 2.793333e-02   p_joint 1.600667e-01

Outputting figure to mutsig2_images.part000000000083/IFNGR1.3_1498_60000_0.71528_0.027933_0.16007.png
                gene_name: IFNGR1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 68 percent done.
IFNGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
Cons ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
IFNGR2   10000 perm   2 sec   (6317 perm/sec)   p_kst 1.204000e-01   p_cons 3.112000e-01   p_joint 1.776000e-01

Joint ci ratio: 5.605020e-02	ci left: 1.909630e-01	ci right 2.020253e-01	k: 3929	n:20000
Cons ci ratio: 4.151853e-02	ci left: 3.018536e-01	ci right 3.147022e-01	k: 6165	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
IFNGR2   20000 perm   4 sec   (5497 perm/sec)   p_kst 1.225000e-01   p_cons 3.082500e-01   p_joint 1.964500e-01

Outputting figure to mutsig2_images.part000000000083/IFNGR2.3_1042_20000_0.1225_0.30825_0.19645.png
                gene_name: IFNGR2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 70 percent done.
IFT52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
IFT52   10000 perm   2 sec   (6201 perm/sec)   p_kst 3.114000e-01   p_cons 9.360000e-02   p_joint 1.817000e-01

Joint ci ratio: 4.693316e-02	ci left: 2.524924e-01	ci right 2.646778e-01	k: 5171	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 4.103203e-02	ci left: 3.068742e-01	ci right 3.197801e-01	k: 6266	n:20000
IFT52   20000 perm   4 sec   (5404 perm/sec)   p_kst 3.133000e-01   p_cons 9.340000e-02   p_joint 2.585500e-01

Outputting figure to mutsig2_images.part000000000083/IFT52.3_1366_20000_0.3133_0.0934_0.25855.png
                gene_name: IFT52
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 72 percent done.
IFT74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
Cons ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
KS ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
IFT74   10000 perm   2 sec   (5611 perm/sec)   p_kst 4.921000e-01   p_cons 6.028000e-01   p_joint 6.905000e-01

Outputting figure to mutsig2_images.part000000000083/IFT74.3_1948_10000_0.4921_0.6028_0.6905.png
                gene_name: IFT74
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 74 percent done.
IGFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
KS ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
IGFBP1   10000 perm   2 sec   (6480 perm/sec)   p_kst 7.112000e-01   p_cons 8.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IGFBP1.3_796_10000_0.7112_0.8949_1.png
                gene_name: IGFBP1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
IGSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
IGSF5   10000 perm   2 sec   (6182 perm/sec)   p_kst 9.097000e-01   p_cons 1.456000e-01   p_joint 3.256000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF5.3_1260_10000_0.9097_0.1456_0.3256.png
                gene_name: IGSF5
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 78 percent done.
IFI35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
IFI35   10000 perm   1 sec   (6699 perm/sec)   p_kst 1   p_cons 8.129000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFI35.2_895_10000_1_0.8129_1.png
                gene_name: IFI35
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
IFITM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
IFITM5   10000 perm   1 sec   (7159 perm/sec)   p_kst 6.310000e-01   p_cons 9.502000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFITM5.2_407_10000_0.631_0.9502_1.png
                gene_name: IFITM5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
IFNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
Cons ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
IFNA6   10000 perm   1 sec   (6792 perm/sec)   p_kst 2.040000e-01   p_cons 2.330000e-02   p_joint 5.740000e-02

Joint ci ratio: 1.526953e-01	ci left: 2.945960e-02	ci right 3.437773e-02	k: 637	n:20000
Cons ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
KS ci ratio: 5.450130e-02	ci left: 1.998687e-01	ci right 2.111171e-01	k: 4109	n:20000
IFNA6   20000 perm   3 sec   (5804 perm/sec)   p_kst 2.054500e-01   p_cons 2.275000e-02   p_joint 3.185000e-02

Joint ci ratio: 1.173954e-01	ci left: 3.372600e-02	ci right 3.796450e-02	k: 1074	n:30000
Cons ci ratio: 1.470676e-01	ci left: 2.142975e-02	ci right 2.486345e-02	k: 693	n:30000
KS ci ratio: 4.465991e-02	ci left: 1.997497e-01	ci right 2.089076e-01	k: 6129	n:30000
IFNA6   30000 perm   5 sec   (5499 perm/sec)   p_kst 2.043000e-01   p_cons 2.310000e-02   p_joint 3.580000e-02

Joint ci ratio: 9.193471e-02	ci left: 4.147284e-02	ci right 4.549378e-02	k: 1738	n:40000
Cons ci ratio: 1.266197e-01	ci left: 2.191651e-02	ci right 2.490323e-02	k: 935	n:40000
KS ci ratio: 3.865392e-02	ci left: 2.005564e-01	ci right 2.084865e-01	k: 8180	n:40000
IFNA6   40000 perm   8 sec   (5298 perm/sec)   p_kst 2.045000e-01   p_cons 2.337500e-02   p_joint 4.345000e-02

Joint ci ratio: 7.508009e-02	ci left: 4.975562e-02	ci right 5.365663e-02	k: 2584	n:50000
Cons ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
KS ci ratio: 3.455670e-02	ci left: 2.011309e-01	ci right 2.082235e-01	k: 10233	n:50000
IFNA6   50000 perm   10 sec   (5140 perm/sec)   p_kst 2.046600e-01   p_cons 2.314000e-02   p_joint 5.168000e-02

Joint ci ratio: 5.359284e-02	ci left: 7.966842e-02	ci right 8.407212e-02	k: 4911	n:60000
Cons ci ratio: 1.030846e-01	ci left: 2.231889e-02	ci right 2.476083e-02	k: 1411	n:60000
KS ci ratio: 3.161836e-02	ci left: 2.006988e-01	ci right 2.071632e-01	k: 12235	n:60000
IFNA6   60000 perm   12 sec   (4999 perm/sec)   p_kst 2.039167e-01   p_cons 2.351667e-02   p_joint 8.185000e-02

Joint ci ratio: 4.465778e-02	ci left: 9.693846e-02	ci right 1.013805e-01	k: 6940	n:70000
Cons ci ratio: 9.527027e-02	ci left: 2.248811e-02	ci right 2.475161e-02	k: 1652	n:70000
KS ci ratio: 2.921680e-02	ci left: 2.015599e-01	ci right 2.075503e-01	k: 14318	n:70000
IFNA6   70000 perm   14 sec   (4885 perm/sec)   p_kst 2.045429e-01   p_cons 2.360000e-02   p_joint 9.914286e-02

Outputting figure to mutsig2_images.part000000000083/IFNA6.2_572_70000_0.20454_0.0236_0.099143.png
                gene_name: IFNA6
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 84 percent done.
IFNAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
Cons ci ratio: 3.075757e-02	ci left: 6.092978e-01	ci right 6.284329e-01	k: 6189	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
IFNAR2   10000 perm   2 sec   (6266 perm/sec)   p_kst 4.635000e-01   p_cons 6.189000e-01   p_joint 8.058000e-01

Outputting figure to mutsig2_images.part000000000083/IFNAR2.2_1740_10000_0.4635_0.6189_0.8058.png
                gene_name: IFNAR2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 86 percent done.
IFT140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
IFT140   10000 perm   2 sec   (4676 perm/sec)   p_kst 8.443000e-01   p_cons 3.201000e-01   p_joint 8.282000e-01

Outputting figure to mutsig2_images.part000000000083/IFT140.2_4505_10000_0.8443_0.3201_0.8282.png
                gene_name: IFT140
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 88 percent done.
IGBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
Cons ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
KS ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
IGBP1   10000 perm   2 sec   (6454 perm/sec)   p_kst 8.217000e-01   p_cons 7.876000e-01   p_joint 9.388000e-01

Outputting figure to mutsig2_images.part000000000083/IGBP1.2_1044_10000_0.8217_0.7876_0.9388.png
                gene_name: IGBP1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 90 percent done.
IGF2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
Cons ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KS ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
IGF2BP2   10000 perm   2 sec   (6066 perm/sec)   p_kst 7.784000e-01   p_cons 4.666000e-01   p_joint 9.655000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP2.2_1864_10000_0.7784_0.4666_0.9655.png
                gene_name: IGF2BP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
IGFBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
Cons ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
KS ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
IGFBP3   10000 perm   1 sec   (6979 perm/sec)   p_kst 9.520000e-02   p_cons 1.373000e-01   p_joint 1.301000e-01

Joint ci ratio: 5.360787e-02	ci left: 2.052636e-01	ci right 2.166206e-01	k: 4218	n:20000
Cons ci ratio: 6.628155e-02	ci left: 1.438940e-01	ci right 1.538083e-01	k: 2976	n:20000
KS ci ratio: 8.600185e-02	ci left: 9.003879e-02	ci right 9.817966e-02	k: 1881	n:20000
IGFBP3   20000 perm   3 sec   (6025 perm/sec)   p_kst 9.405000e-02   p_cons 1.488000e-01   p_joint 2.109000e-01

Outputting figure to mutsig2_images.part000000000083/IGFBP3.2_910_20000_0.09405_0.1488_0.2109.png
                gene_name: IGFBP3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 94 percent done.
IGFBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
KS ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
IGFBP5   10000 perm   2 sec   (6538 perm/sec)   p_kst 2.611000e-01   p_cons 3.260000e-02   p_joint 1.050000e-02

Joint ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
Cons ci ratio: 1.564056e-01	ci left: 2.806407e-02	ci right 3.287372e-02	k: 608	n:20000
KS ci ratio: 4.664121e-02	ci left: 2.548739e-01	ci right 2.670957e-01	k: 5219	n:20000
IGFBP5   20000 perm   4 sec   (5712 perm/sec)   p_kst 2.609500e-01   p_cons 3.040000e-02   p_joint 1.345000e-02

Joint ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
Cons ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
KS ci ratio: 3.780802e-02	ci left: 2.587865e-01	ci right 2.687927e-01	k: 7913	n:30000
IGFBP5   30000 perm   6 sec   (5404 perm/sec)   p_kst 2.637667e-01   p_cons 2.996667e-02   p_joint 1.166667e-02

Joint ci ratio: 1.998665e-01	ci left: 8.572620e-03	ci right 1.049959e-02	k: 380	n:40000
Cons ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
KS ci ratio: 3.272379e-02	ci left: 2.596850e-01	ci right 2.683493e-01	k: 10560	n:40000
IGFBP5   40000 perm   8 sec   (5190 perm/sec)   p_kst 2.640000e-01   p_cons 2.965000e-02   p_joint 9.500000e-03

Joint ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
Cons ci ratio: 1.004452e-01	ci left: 2.807328e-02	ci right 3.106167e-02	k: 1477	n:50000
KS ci ratio: 2.929205e-02	ci left: 2.598415e-01	ci right 2.675859e-01	k: 13185	n:50000
IGFBP5   50000 perm   10 sec   (5031 perm/sec)   p_kst 2.637000e-01   p_cons 2.954000e-02   p_joint 1.172000e-02

Joint ci ratio: 1.612787e-01	ci left: 8.963225e-03	ci right 1.055140e-02	k: 584	n:60000
Cons ci ratio: 9.232854e-02	ci left: 2.781841e-02	ci right 3.052739e-02	k: 1749	n:60000
KS ci ratio: 2.678724e-02	ci left: 2.594970e-01	ci right 2.665592e-01	k: 15781	n:60000
IGFBP5   60000 perm   12 sec   (4884 perm/sec)   p_kst 2.630167e-01   p_cons 2.915000e-02   p_joint 9.733333e-03

Joint ci ratio: 1.382354e-01	ci left: 1.057154e-02	ci right 1.215507e-02	k: 794	n:70000
Cons ci ratio: 8.639201e-02	ci left: 2.733571e-02	ci right 2.981786e-02	k: 1999	n:70000
KS ci ratio: 2.481694e-02	ci left: 2.594994e-01	ci right 2.660346e-01	k: 18393	n:70000
IGFBP5   70000 perm   15 sec   (4776 perm/sec)   p_kst 2.627571e-01   p_cons 2.855714e-02   p_joint 1.134286e-02

Joint ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
Cons ci ratio: 8.104473e-02	ci left: 2.725980e-02	ci right 2.957457e-02	k: 2272	n:80000
KS ci ratio: 2.320717e-02	ci left: 2.598271e-01	ci right 2.659402e-01	k: 21030	n:80000
IGFBP5   80000 perm   17 sec   (4675 perm/sec)   p_kst 2.628750e-01   p_cons 2.840000e-02   p_joint 1.146250e-02

Joint ci ratio: 1.213220e-01	ci left: 1.077054e-02	ci right 1.217232e-02	k: 1031	n:90000
Cons ci ratio: 7.641167e-02	ci left: 2.732441e-02	ci right 2.950612e-02	k: 2556	n:90000
KS ci ratio: 2.194844e-02	ci left: 2.587972e-01	ci right 2.645515e-01	k: 23550	n:90000
IGFBP5   90000 perm   20 sec   (4577 perm/sec)   p_kst 2.616667e-01   p_cons 2.840000e-02   p_joint 1.145556e-02

Joint ci ratio: 1.246684e-01	ci left: 9.179316e-03	ci right 1.040937e-02	k: 978	n:100000
Cons ci ratio: 7.240022e-02	ci left: 2.744790e-02	ci right 2.951957e-02	k: 2847	n:100000
KS ci ratio: 2.082092e-02	ci left: 2.589676e-01	ci right 2.644262e-01	k: 26169	n:100000
IGFBP5   100000 perm   22 sec   (4487 perm/sec)   p_kst 2.616900e-01   p_cons 2.847000e-02   p_joint 9.780000e-03

Joint ci ratio: 1.094041e-01	ci left: 1.090482e-02	ci right 1.217567e-02	k: 1268	n:110000
Cons ci ratio: 6.901733e-02	ci left: 2.750670e-02	ci right 2.948190e-02	k: 3133	n:110000
KS ci ratio: 1.985665e-02	ci left: 2.590045e-01	ci right 2.642081e-01	k: 28776	n:110000
IGFBP5   110000 perm   25 sec   (4398 perm/sec)   p_kst 2.616000e-01   p_cons 2.848182e-02   p_joint 1.152727e-02

Joint ci ratio: 1.051454e-01	ci left: 1.084760e-02	ci right 1.205952e-02	k: 1373	n:120000
Cons ci ratio: 6.640880e-02	ci left: 2.727881e-02	ci right 2.916075e-02	k: 3385	n:120000
KS ci ratio: 1.901420e-02	ci left: 2.590568e-01	ci right 2.640381e-01	k: 31385	n:120000
IGFBP5   120000 perm   28 sec   (4315 perm/sec)   p_kst 2.615417e-01   p_cons 2.820833e-02   p_joint 1.144167e-02

Joint ci ratio: 1.012443e-01	ci left: 1.082249e-02	ci right 1.198408e-02	k: 1481	n:130000
Cons ci ratio: 6.393068e-02	ci left: 2.720835e-02	ci right 2.901278e-02	k: 3653	n:130000
KS ci ratio: 1.826553e-02	ci left: 2.592124e-01	ci right 2.639983e-01	k: 34008	n:130000
IGFBP5   130000 perm   31 sec   (4231 perm/sec)   p_kst 2.616000e-01   p_cons 2.810000e-02   p_joint 1.139231e-02

Joint ci ratio: 9.731507e-02	ci left: 1.089927e-02	ci right 1.202110e-02	k: 1603	n:140000
Cons ci ratio: 6.146929e-02	ci left: 2.736016e-02	ci right 2.910231e-02	k: 3951	n:140000
KS ci ratio: 1.760406e-02	ci left: 2.592351e-01	ci right 2.638463e-01	k: 36615	n:140000
IGFBP5   140000 perm   34 sec   (4155 perm/sec)   p_kst 2.615357e-01   p_cons 2.822143e-02   p_joint 1.145000e-02

Outputting figure to mutsig2_images.part000000000083/IGFBP5.2_835_140000_0.26154_0.028221_0.01145.png
                gene_name: IGFBP5
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 96 percent done.
IGFL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 2.057608e-02	ci left: 7.758023e-01	ci right 7.920319e-01	k: 7840	n:10000
IGFL2   10000 perm   1 sec   (6939 perm/sec)   p_kst 7.840000e-01   p_cons 9.912000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IGFL2.2_432_10000_0.784_0.9912_1.png
                gene_name: IGFL2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
IGLON5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.138021e-02	ci left: 5.997569e-01	ci right 6.189793e-01	k: 6094	n:10000
Cons ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
KS ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
IGLON5   10000 perm   2 sec   (6344 perm/sec)   p_kst 4.352000e-01   p_cons 5.651000e-01   p_joint 6.094000e-01

Outputting figure to mutsig2_images.part000000000083/IGLON5.2_1043_10000_0.4352_0.5651_0.6094.png
                gene_name: IGLON5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000083
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 83 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422065: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000084> was used as the working directory.
Started at Wed Oct 24 17:55:00 2012
Results reported at Wed Oct 24 18:05:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000084.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000084.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 84  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000084.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    590.31 sec.
    Max Memory :      5356 MB
    Max Swap   :      7625 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
84
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 84
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 84: processing genes 7510 - 7599
Calculating significance of each gene.
Using projection method.
7510	IGSF8	2.599332e-01
7511	IGSF9	9.533556e-01
7512	IGSF9B	1
7513	IHH	1
7514	IK	9.472667e-01
7515	IKBIP	1
7516	IKBKAP	9.564148e-01
7517	IKBKB	8.971578e-01
7518	IKBKE	6.742772e-01
7519	IKZF1	3.803185e-01
7520	IKZF2	2.112782e-01
7521	IKZF3	1
7522	IKZF4	1
7523	IKZF5	5.356522e-01
7524	IL10	5.103367e-01
7525	IL10RA	3.966147e-01
7526	IL10RB	4.198912e-01
7527	IL11RA	1
7528	IL12A	2.194543e-01
7529	IL12B	1
7530	IL12RB1	9.614872e-01
7531	IL12RB2	2.366576e-01
7532	IL13	4.878571e-01
7533	IL13RA1	1
7534	IL13RA2	2.003999e-01
7535	IL15	1.108914e-01
7536	IL15RA	6.661175e-01
7537	IL16	9.157072e-01
7538	IL17A	1.731056e-02
7539	IL17B	1.071206e-01
7540	IL17C	1
7541	IL17D	1
7542	IL17F	8.926598e-02
7543	IL17RA	8.189346e-01
7544	IL17RB	1
7545	IL17RC	9.857473e-01
7546	IL17RD	8.825233e-01
7547	IL17RE	2.029592e-01
7548	IL17REL	8.120348e-01
7549	IL18	1
7550	IL18BP	6.436299e-01
7551	IL18R1	7.290838e-01
7552	IL18RAP	1.850841e-01
7553	IL19	5.561079e-01
7554	IL1A	1.865905e-01
7555	IL1B	1
7556	IL1F10	1
7557	IL1F5	1
7558	IL1F6	9.529757e-02
7559	IL1F7	1.959692e-01
7560	IL1F8	4.143515e-01
7561	IL1F9	1
7562	IL1R1	9.052144e-01
7563	IL1R2	5.300679e-01
7564	IL1RAP	8.875891e-01
7565	IL1RAPL1	4.644439e-05
7566	IL1RAPL2	3.852584e-02
7567	IL1RL1	1.338930e-01
7568	IL1RL2	7.215098e-01
7569	IL1RN	4.961380e-01
7570	IL2	6.470832e-03
7571	IL20	1
7572	IL20RA	1
7573	IL20RB	2.214065e-01
7574	IL21	2.601649e-01
In gene IL21R the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 1649    n = 1	mu =   3.68e-07
7575	IL21R	7.332716e-01
7576	IL22	1.408753e-01
7577	IL22RA1	1
7578	IL22RA2	3.669479e-01
7579	IL23A	1
7580	IL23R	1
7581	IL24	2.651621e-01
7582	IL25	1.870175e-01
7583	IL26	1
7584	IL27	4.195505e-01
7585	IL27RA	1
7586	IL28A	1
7587	IL28B	1.839379e-01
7588	IL28RA	3.796429e-01
7589	IL29	1
7590	IL2RA	5.262414e-01
7591	IL2RB	2.772879e-01
7592	IL2RG	2.651918e-01
7593	IL3	6.259790e-01
7594	IL31	3.037615e-03
7595	IL31RA	6.126153e-01
7596	IL32	2.752832e-01
7597	IL33	4.003915e-01
7598	IL34	1
7599	IL3RA	9.217521e-01
Done

Running MutSig 2:
Scatter job 84: processing genes 7510 - 7599
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IL1RAPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
IL1RAPL1   10000 perm   2 sec   (4889 perm/sec)   p_kst 6.490000e-02   p_cons 5.700000e-02   p_joint 5.580000e-02

Joint ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
Cons ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
KS ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
IL1RAPL1   20000 perm   6 sec   (3175 perm/sec)   p_kst 7.030000e-02   p_cons 5.810000e-02   p_joint 3.530000e-02

Joint ci ratio: 1.063379e-01	ci left: 4.102452e-02	ci right 4.566444e-02	k: 1299	n:30000
Cons ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
KS ci ratio: 8.112933e-02	ci left: 6.926340e-02	ci right 7.515310e-02	k: 2165	n:30000
IL1RAPL1   30000 perm   9 sec   (3467 perm/sec)   p_kst 7.216667e-02   p_cons 5.763333e-02   p_joint 4.330000e-02

Joint ci ratio: 9.163214e-02	ci left: 4.174179e-02	ci right 4.577478e-02	k: 1749	n:40000
Cons ci ratio: 8.041469e-02	ci left: 5.381565e-02	ci right 5.834906e-02	k: 2242	n:40000
KS ci ratio: 7.080349e-02	ci left: 6.864941e-02	ci right 7.371306e-02	k: 2846	n:40000
IL1RAPL1   40000 perm   11 sec   (3618 perm/sec)   p_kst 7.115000e-02   p_cons 5.605000e-02   p_joint 4.372500e-02

Outputting figure to mutsig2_images.part000000000084/IL1RAPL1.13_2131_40000_0.07115_0.05605_0.043725.png
                gene_name: IL1RAPL1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 2 percent done.
IL12RB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
IL12RB2   10000 perm   2 sec   (5370 perm/sec)   p_kst 7.807000e-01   p_cons 2.206000e-01   p_joint 4.312000e-01

Outputting figure to mutsig2_images.part000000000084/IL12RB2.12_2649_10000_0.7807_0.2206_0.4312.png
                gene_name: IL12RB2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 4 percent done.
IL1RAPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
Cons ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
KS ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
IL1RAPL2   10000 perm   2 sec   (5925 perm/sec)   p_kst 1.221000e-01   p_cons 3.020000e-02   p_joint 5.420000e-02

Joint ci ratio: 1.270996e-01	ci left: 4.250762e-02	ci right 4.832547e-02	k: 907	n:20000
Cons ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
KS ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
IL1RAPL2   20000 perm   4 sec   (5376 perm/sec)   p_kst 1.223000e-01   p_cons 3.105000e-02   p_joint 4.535000e-02

Joint ci ratio: 1.093625e-01	ci left: 3.881651e-02	ci right 4.333958e-02	k: 1231	n:30000
Cons ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
KS ci ratio: 6.202383e-02	ci left: 1.138437e-01	ci right 1.211639e-01	k: 3524	n:30000
IL1RAPL2   30000 perm   6 sec   (5129 perm/sec)   p_kst 1.174667e-01   p_cons 3.226667e-02   p_joint 4.103333e-02

Joint ci ratio: 8.552353e-02	ci left: 4.776195e-02	ci right 5.205369e-02	k: 1995	n:40000
Cons ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
KS ci ratio: 5.361747e-02	ci left: 1.147056e-01	ci right 1.210500e-01	k: 4714	n:40000
IL1RAPL2   40000 perm   8 sec   (4975 perm/sec)   p_kst 1.178500e-01   p_cons 3.217500e-02   p_joint 4.987500e-02

Joint ci ratio: 8.956113e-02	ci left: 3.524498e-02	ci right 3.856907e-02	k: 1844	n:50000
Cons ci ratio: 9.988940e-02	ci left: 2.838549e-02	ci right 3.138942e-02	k: 1493	n:50000
KS ci ratio: 4.793742e-02	ci left: 1.151251e-01	ci right 1.207993e-01	k: 5897	n:50000
IL1RAPL2   50000 perm   10 sec   (4860 perm/sec)   p_kst 1.179400e-01   p_cons 2.986000e-02   p_joint 3.688000e-02

Outputting figure to mutsig2_images.part000000000084/IL1RAPL2.10_2101_50000_0.11794_0.02986_0.03688.png
                gene_name: IL1RAPL2
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 5 percent done.
IL16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 1.680366e-02	ci left: 8.375528e-01	ci right 8.518458e-01	k: 8448	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
IL16   10000 perm   2 sec   (5057 perm/sec)   p_kst 8.300000e-03   p_cons 8.448000e-01   p_joint 3.750000e-02

Joint ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
Cons ci ratio: 1.185639e-02	ci left: 8.402638e-01	ci right 8.503356e-01	k: 16907	n:20000
KS ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
IL16   20000 perm   4 sec   (4628 perm/sec)   p_kst 9.200000e-03   p_cons 8.453500e-01   p_joint 3.545000e-02

Joint ci ratio: 1.291342e-01	ci left: 2.787259e-02	ci right 3.175251e-02	k: 893	n:30000
Cons ci ratio: 1.006457e-02	ci left: 8.306497e-01	ci right 8.390853e-01	k: 25047	n:30000
KS ci ratio: 2.335866e-01	ci left: 8.213484e-03	ci right 1.041645e-02	k: 278	n:30000
IL16   30000 perm   7 sec   (4477 perm/sec)   p_kst 9.266667e-03   p_cons 8.349000e-01   p_joint 2.976667e-02

Joint ci ratio: 8.516486e-02	ci left: 4.815383e-02	ci right 5.246175e-02	k: 2011	n:40000
Cons ci ratio: 8.725587e-03	ci left: 8.309222e-01	ci right 8.382292e-01	k: 33384	n:40000
KS ci ratio: 1.911895e-01	ci left: 9.405173e-03	ci right 1.141686e-02	k: 415	n:40000
IL16   40000 perm   9 sec   (4368 perm/sec)   p_kst 1.037500e-02   p_cons 8.346000e-01   p_joint 5.027500e-02

Joint ci ratio: 1.072552e-01	ci left: 2.462272e-02	ci right 2.743268e-02	k: 1300	n:50000
Cons ci ratio: 7.829791e-03	ci left: 8.304069e-01	ci right 8.369543e-01	k: 41685	n:50000
KS ci ratio: 1.710055e-01	ci left: 9.510141e-03	ci right 1.130738e-02	k: 519	n:50000
IL16   50000 perm   12 sec   (4264 perm/sec)   p_kst 1.038000e-02   p_cons 8.337000e-01   p_joint 2.600000e-02

Joint ci ratio: 1.014056e-01	ci left: 2.306640e-02	ci right 2.554657e-02	k: 1457	n:60000
Cons ci ratio: 7.304659e-03	ci left: 8.245367e-01	ci right 8.305983e-01	k: 49655	n:60000
KS ci ratio: 1.552287e-01	ci left: 9.699815e-03	ci right 1.134805e-02	k: 630	n:60000
IL16   60000 perm   14 sec   (4203 perm/sec)   p_kst 1.050000e-02   p_cons 8.275833e-01   p_joint 2.428333e-02

Joint ci ratio: 8.398035e-02	ci left: 2.891659e-02	ci right 3.146541e-02	k: 2112	n:70000
Cons ci ratio: 6.474320e-03	ci left: 8.369322e-01	ci right 8.423825e-01	k: 58777	n:70000
KS ci ratio: 1.437305e-01	ci left: 9.758106e-03	ci right 1.128288e-02	k: 735	n:70000
IL16   70000 perm   17 sec   (4125 perm/sec)   p_kst 1.050000e-02   p_cons 8.396714e-01   p_joint 3.017143e-02

Joint ci ratio: 8.300078e-02	ci left: 2.599799e-02	ci right 2.826148e-02	k: 2169	n:80000
Cons ci ratio: 6.052706e-03	ci left: 8.372649e-01	ci right 8.423604e-01	k: 67186	n:80000
KS ci ratio: 1.352744e-01	ci left: 9.684396e-03	ci right 1.110145e-02	k: 830	n:80000
IL16   80000 perm   20 sec   (4056 perm/sec)   p_kst 1.037500e-02   p_cons 8.398250e-01   p_joint 2.711250e-02

Joint ci ratio: 8.126808e-02	ci left: 2.417491e-02	ci right 2.623362e-02	k: 2267	n:90000
Cons ci ratio: 5.711074e-03	ci left: 8.371971e-01	ci right 8.420032e-01	k: 75565	n:90000
KS ci ratio: 1.269136e-01	ci left: 9.822803e-03	ci right 1.116458e-02	k: 943	n:90000
IL16   90000 perm   23 sec   (3993 perm/sec)   p_kst 1.047778e-02   p_cons 8.396111e-01   p_joint 2.518889e-02

Joint ci ratio: 7.795886e-02	ci left: 2.369778e-02	ci right 2.562993e-02	k: 2465	n:100000
Cons ci ratio: 5.426463e-03	ci left: 8.368983e-01	ci right 8.414620e-01	k: 83919	n:100000
KS ci ratio: 1.198758e-01	ci left: 9.945389e-03	ci right 1.122324e-02	k: 1057	n:100000
IL16   100000 perm   25 sec   (3929 perm/sec)   p_kst 1.057000e-02   p_cons 8.391900e-01   p_joint 2.465000e-02

Joint ci ratio: 7.156064e-02	ci left: 2.560345e-02	ci right 2.751253e-02	k: 2920	n:110000
Cons ci ratio: 5.177044e-03	ci left: 8.368420e-01	ci right 8.411946e-01	k: 92293	n:110000
KS ci ratio: 1.145361e-01	ci left: 9.932528e-03	ci right 1.114803e-02	k: 1158	n:110000
IL16   110000 perm   28 sec   (3879 perm/sec)   p_kst 1.052727e-02   p_cons 8.390273e-01   p_joint 2.654545e-02

Joint ci ratio: 6.946665e-02	ci left: 2.495127e-02	ci right 2.675508e-02	k: 3101	n:120000
Cons ci ratio: 4.962031e-03	ci left: 8.366401e-01	ci right 8.408102e-01	k: 100648	n:120000
KS ci ratio: 1.097637e-01	ci left: 9.939080e-03	ci right 1.110142e-02	k: 1261	n:120000
IL16   120000 perm   31 sec   (3825 perm/sec)   p_kst 1.050833e-02   p_cons 8.387333e-01   p_joint 2.584167e-02

Joint ci ratio: 6.497177e-02	ci left: 2.635275e-02	ci right 2.812996e-02	k: 3540	n:130000
Cons ci ratio: 4.958735e-03	ci left: 8.257365e-01	ci right 8.298489e-01	k: 107614	n:130000
KS ci ratio: 1.054251e-01	ci left: 9.967988e-03	ci right 1.108478e-02	k: 1367	n:130000
IL16   130000 perm   34 sec   (3773 perm/sec)   p_kst 1.051538e-02   p_cons 8.278000e-01   p_joint 2.723077e-02

Joint ci ratio: 6.430454e-02	ci left: 2.502502e-02	ci right 2.669470e-02	k: 3619	n:140000
Cons ci ratio: 4.776559e-03	ci left: 8.259196e-01	ci right 8.298811e-01	k: 115907	n:140000
KS ci ratio: 1.015634e-01	ci left: 9.993542e-03	ci right 1.106973e-02	k: 1473	n:140000
IL16   140000 perm   38 sec   (3719 perm/sec)   p_kst 1.052143e-02   p_cons 8.279071e-01   p_joint 2.585000e-02

Joint ci ratio: 6.659133e-02	ci left: 2.182754e-02	ci right 2.333766e-02	k: 3386	n:150000
Cons ci ratio: 4.609201e-03	ci left: 8.263216e-01	ci right 8.301457e-01	k: 124236	n:150000
KS ci ratio: 9.841245e-02	ci left: 9.951291e-03	ci right 1.098776e-02	k: 1569	n:150000
IL16   150000 perm   41 sec   (3668 perm/sec)   p_kst 1.046000e-02   p_cons 8.282400e-01   p_joint 2.257333e-02

Outputting figure to mutsig2_images.part000000000084/IL16.9_4071_150000_0.01046_0.82824_0.022573.png
                gene_name: IL16
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 7 percent done.
IL21R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
IL21R   10000 perm   2 sec   (5756 perm/sec)   p_kst 7.807000e-01   p_cons 7.632000e-01   p_joint 9.276000e-01

Outputting figure to mutsig2_images.part000000000084/IL21R.9_1649_10000_0.7807_0.7632_0.9276.png
                gene_name: IL21R
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 9 percent done.
IL1RL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
IL1RL1   10000 perm   2 sec   (5756 perm/sec)   p_kst 9.738000e-01   p_cons 2.824000e-01   p_joint 6.927000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RL1.8_1728_10000_0.9738_0.2824_0.6927.png
                gene_name: IL1RL1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 11 percent done.
IGSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
Cons ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
KS ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
IGSF8   10000 perm   2 sec   (6126 perm/sec)   p_kst 1.177000e-01   p_cons 7.407000e-01   p_joint 2.659000e-01

Joint ci ratio: 5.416971e-02	ci left: 2.018483e-01	ci right 2.131369e-01	k: 4149	n:20000
Cons ci ratio: 1.712885e-02	ci left: 7.173951e-01	ci right 7.298398e-01	k: 14473	n:20000
KS ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
IGSF8   20000 perm   4 sec   (5424 perm/sec)   p_kst 1.186000e-01   p_cons 7.236500e-01   p_joint 2.074500e-01

Outputting figure to mutsig2_images.part000000000084/IGSF8.7_1866_20000_0.1186_0.72365_0.20745.png
                gene_name: IGSF8
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
IGSF9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
Cons ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
KS ci ratio: 6.315665e-02	ci left: 2.692348e-01	ci right 2.868947e-01	k: 2780	n:10000
IGSF9B   10000 perm   2 sec   (5075 perm/sec)   p_kst 2.780000e-01   p_cons 9.154000e-01   p_joint 5.486000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF9B.7_4126_10000_0.278_0.9154_0.5486.png
                gene_name: IGSF9B
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 14 percent done.
IKZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
KS ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
IKZF1   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.116000e-01   p_cons 6.047000e-01   p_joint 3.188000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF1.7_1588_10000_0.2116_0.6047_0.3188.png
                gene_name: IKZF1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 16 percent done.
IL18RAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
Cons ci ratio: 1.641121e-02	ci left: 8.437668e-01	ci right 8.578282e-01	k: 8509	n:10000
KS ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
IL18RAP   10000 perm   2 sec   (5772 perm/sec)   p_kst 4.810000e-02   p_cons 8.509000e-01   p_joint 1.389000e-01

Joint ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
Cons ci ratio: 1.137192e-02	ci left: 8.510068e-01	ci right 8.607895e-01	k: 17119	n:20000
KS ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
IL18RAP   20000 perm   4 sec   (5227 perm/sec)   p_kst 4.695000e-02   p_cons 8.559500e-01   p_joint 1.214500e-01

Joint ci ratio: 6.384387e-02	ci left: 1.080580e-01	ci right 1.152174e-01	k: 3348	n:30000
Cons ci ratio: 9.285543e-03	ci left: 8.519086e-01	ci right 8.598890e-01	k: 25678	n:30000
KS ci ratio: 1.025604e-01	ci left: 4.404707e-02	ci right 4.884126e-02	k: 1392	n:30000
IL18RAP   30000 perm   6 sec   (5062 perm/sec)   p_kst 4.640000e-02   p_cons 8.559333e-01   p_joint 1.116000e-01

Joint ci ratio: 5.740619e-02	ci left: 1.013950e-01	ci right 1.074125e-01	k: 4175	n:40000
Cons ci ratio: 8.075081e-03	ci left: 8.514102e-01	ci right 8.583382e-01	k: 34196	n:40000
KS ci ratio: 8.959010e-02	ci left: 4.362508e-02	ci right 4.774120e-02	k: 1826	n:40000
IL18RAP   40000 perm   8 sec   (4945 perm/sec)   p_kst 4.565000e-02   p_cons 8.549000e-01   p_joint 1.043750e-01

Outputting figure to mutsig2_images.part000000000084/IL18RAP.7_1840_40000_0.04565_0.8549_0.10437.png
                gene_name: IL18RAP
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 18 percent done.
IL17RE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
IL17RE   10000 perm   2 sec   (5488 perm/sec)   p_kst 1.868000e-01   p_cons 6.331000e-01   p_joint 3.138000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RE.6_2068_10000_0.1868_0.6331_0.3138.png
                gene_name: IL17RE
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 19 percent done.
IGSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
KS ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
IGSF9   10000 perm   2 sec   (5123 perm/sec)   p_kst 2.028000e-01   p_cons 4.031000e-01   p_joint 2.837000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF9.5_3620_10000_0.2028_0.4031_0.2837.png
                gene_name: IGSF9
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 21 percent done.
IKBKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
KS ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
IKBKAP   10000 perm   2 sec   (5352 perm/sec)   p_kst 8.513000e-01   p_cons 4.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IKBKAP.5_4143_10000_0.8513_0.4552_1.png
                gene_name: IKBKAP
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
IKBKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
Cons ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
IKBKE   10000 perm   2 sec   (5518 perm/sec)   p_kst 5.030000e-01   p_cons 3.821000e-01   p_joint 5.924000e-01

Outputting figure to mutsig2_images.part000000000084/IKBKE.5_2231_10000_0.503_0.3821_0.5924.png
                gene_name: IKBKE
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 25 percent done.
IKZF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
Cons ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
KS ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
IKZF2   10000 perm   2 sec   (6259 perm/sec)   p_kst 2.645000e-01   p_cons 7.438000e-01   p_joint 3.982000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF2.5_1609_10000_0.2645_0.7438_0.3982.png
                gene_name: IKZF2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 26 percent done.
IL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
IL2   10000 perm   1 sec   (6767 perm/sec)   p_kst 2.387000e-01   p_cons 9.802000e-01   p_joint 4.642000e-01

Outputting figure to mutsig2_images.part000000000084/IL2.5_478_10000_0.2387_0.9802_0.4642.png
                gene_name: IL2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 28 percent done.
IL2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
Cons ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
KS ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
IL2RB   10000 perm   2 sec   (6046 perm/sec)   p_kst 4.544000e-01   p_cons 8.594000e-01   p_joint 8.025000e-01

Outputting figure to mutsig2_images.part000000000084/IL2RB.5_1692_10000_0.4544_0.8594_0.8025.png
                gene_name: IL2RB
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 30 percent done.
IL3RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
Cons ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
IL3RA   10000 perm   2 sec   (6039 perm/sec)   p_kst 9.133000e-01   p_cons 3.242000e-01   p_joint 6.684000e-01

Outputting figure to mutsig2_images.part000000000084/IL3RA.5_1181_10000_0.9133_0.3242_0.6684.png
                gene_name: IL3RA
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 32 percent done.
IL10RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
Cons ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
KS ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
IL10RA   10000 perm   2 sec   (6456 perm/sec)   p_kst 8.275000e-01   p_cons 1.782000e-01   p_joint 5.592000e-01

Outputting figure to mutsig2_images.part000000000084/IL10RA.4_1765_10000_0.8275_0.1782_0.5592.png
                gene_name: IL10RA
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 33 percent done.
IL17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
Cons ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
KS ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
IL17A   10000 perm   2 sec   (6595 perm/sec)   p_kst 5.197000e-01   p_cons 9.183000e-01   p_joint 8.018000e-01

Outputting figure to mutsig2_images.part000000000084/IL17A.4_480_10000_0.5197_0.9183_0.8018.png
                gene_name: IL17A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 35 percent done.
IL1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.536206e-02	ci left: 6.958521e-01	ci right 7.138284e-01	k: 7049	n:10000
Cons ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
KS ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
IL1R2   10000 perm   2 sec   (5890 perm/sec)   p_kst 3.995000e-01   p_cons 7.224000e-01   p_joint 7.049000e-01

Outputting figure to mutsig2_images.part000000000084/IL1R2.4_1229_10000_0.3995_0.7224_0.7049.png
                gene_name: IL1R2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 37 percent done.
IL1RL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
IL1RL2   10000 perm   2 sec   (6371 perm/sec)   p_kst 3.061000e-01   p_cons 1.680000e-01   p_joint 2.679000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RL2.4_1772_10000_0.3061_0.168_0.2679.png
                gene_name: IL1RL2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 39 percent done.
IL27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
Cons ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
KS ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
IL27   10000 perm   1 sec   (6830 perm/sec)   p_kst 2.540000e-01   p_cons 4.176000e-01   p_joint 4.292000e-01

Outputting figure to mutsig2_images.part000000000084/IL27.4_752_10000_0.254_0.4176_0.4292.png
                gene_name: IL27
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 40 percent done.
IL28RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
IL28RA   10000 perm   2 sec   (6407 perm/sec)   p_kst 1.800000e-02   p_cons 2.611000e-01   p_joint 4.890000e-02

Joint ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
Cons ci ratio: 4.679282e-02	ci left: 2.536335e-01	ci right 2.658364e-01	k: 5194	n:20000
KS ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
IL28RA   20000 perm   3 sec   (5790 perm/sec)   p_kst 1.720000e-02   p_cons 2.597000e-01   p_joint 3.515000e-02

Joint ci ratio: 1.140796e-01	ci left: 3.570254e-02	ci right 4.005421e-02	k: 1135	n:30000
Cons ci ratio: 3.689848e-02	ci left: 2.682957e-01	ci right 2.784149e-01	k: 8200	n:30000
KS ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
IL28RA   30000 perm   5 sec   (5510 perm/sec)   p_kst 1.846667e-02   p_cons 2.733333e-01   p_joint 3.783333e-02

Joint ci ratio: 9.260478e-02	ci left: 4.088610e-02	ci right 4.488060e-02	k: 1714	n:40000
Cons ci ratio: 3.199264e-02	ci left: 2.685139e-01	ci right 2.772691e-01	k: 10915	n:40000
KS ci ratio: 1.415001e-01	ci left: 1.749153e-02	ci right 2.017897e-02	k: 752	n:40000
IL28RA   40000 perm   7 sec   (5346 perm/sec)   p_kst 1.880000e-02   p_cons 2.728750e-01   p_joint 4.285000e-02

Joint ci ratio: 8.931012e-02	ci left: 3.544066e-02	ci right 3.877336e-02	k: 1854	n:50000
Cons ci ratio: 2.862520e-02	ci left: 2.688395e-01	ci right 2.766669e-01	k: 13637	n:50000
KS ci ratio: 1.261696e-01	ci left: 1.774379e-02	ci right 2.015252e-02	k: 946	n:50000
IL28RA   50000 perm   10 sec   (5102 perm/sec)   p_kst 1.892000e-02   p_cons 2.727400e-01   p_joint 3.708000e-02

Joint ci ratio: 8.917576e-02	ci left: 2.980695e-02	ci right 3.260531e-02	k: 1871	n:60000
Cons ci ratio: 2.718089e-02	ci left: 2.539052e-01	ci right 2.609183e-01	k: 15444	n:60000
KS ci ratio: 1.148373e-01	ci left: 1.795497e-02	ci right 2.015857e-02	k: 1142	n:60000
IL28RA   60000 perm   12 sec   (5025 perm/sec)   p_kst 1.903333e-02   p_cons 2.574000e-01   p_joint 3.118333e-02

Joint ci ratio: 9.803927e-02	ci left: 2.123279e-02	ci right 2.343562e-02	k: 1562	n:70000
Cons ci ratio: 2.519962e-02	ci left: 2.536378e-01	ci right 2.601252e-01	k: 17981	n:70000
KS ci ratio: 1.082591e-01	ci left: 1.738947e-02	ci right 1.939359e-02	k: 1286	n:70000
IL28RA   70000 perm   14 sec   (4931 perm/sec)   p_kst 1.837143e-02   p_cons 2.568714e-01   p_joint 2.231429e-02

Joint ci ratio: 7.692692e-02	ci left: 3.022682e-02	ci right 3.265732e-02	k: 2514	n:80000
Cons ci ratio: 2.360057e-02	ci left: 2.533893e-01	ci right 2.594533e-01	k: 20513	n:80000
KS ci ratio: 1.019349e-01	ci left: 1.722402e-02	ci right 1.908616e-02	k: 1451	n:80000
IL28RA   80000 perm   17 sec   (4846 perm/sec)   p_kst 1.813750e-02   p_cons 2.564125e-01   p_joint 3.142500e-02

Joint ci ratio: 7.708133e-02	ci left: 2.685556e-02	ci right 2.901946e-02	k: 2513	n:90000
Cons ci ratio: 2.228411e-02	ci left: 2.529961e-01	ci right 2.587085e-01	k: 23026	n:90000
KS ci ratio: 9.534995e-02	ci left: 1.755368e-02	ci right 1.932200e-02	k: 1658	n:90000
IL28RA   90000 perm   19 sec   (4767 perm/sec)   p_kst 1.842222e-02   p_cons 2.558444e-01   p_joint 2.792222e-02

Outputting figure to mutsig2_images.part000000000084/IL28RA.4_1591_90000_0.018422_0.25584_0.027922.png
                gene_name: IL28RA
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 42 percent done.
IL31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
Cons ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
IL31   10000 perm   2 sec   (6471 perm/sec)   p_kst 3.131000e-01   p_cons 4.884000e-01   p_joint 5.447000e-01

Outputting figure to mutsig2_images.part000000000084/IL31.4_507_10000_0.3131_0.4884_0.5447.png
                gene_name: IL31
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 44 percent done.
IL31RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
IL31RA   10000 perm   2 sec   (5656 perm/sec)   p_kst 6.923000e-01   p_cons 8.437000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL31RA.4_2355_10000_0.6923_0.8437_1.png
                gene_name: IL31RA
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
IKBKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
IKBKB   10000 perm   2 sec   (6439 perm/sec)   p_kst 3.606000e-01   p_cons 3.700000e-03   p_joint 6.430000e-02

Joint ci ratio: 1.286660e-01	ci left: 4.148978e-02	ci right 4.724363e-02	k: 886	n:20000
Cons ci ratio: 4.643804e-01	ci left: 2.729407e-03	ci right 4.420000e-03	k: 70	n:20000
KS ci ratio: 3.576946e-02	ci left: 3.684335e-01	ci right 3.819028e-01	k: 7503	n:20000
IKBKB   20000 perm   4 sec   (5658 perm/sec)   p_kst 3.751500e-01   p_cons 3.500000e-03   p_joint 4.430000e-02

Joint ci ratio: 5.616261e-02	ci left: 1.357625e-01	ci right 1.436408e-01	k: 4190	n:30000
Cons ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
KS ci ratio: 2.924508e-02	ci left: 3.690521e-01	ci right 3.800388e-01	k: 11236	n:30000
IKBKB   30000 perm   6 sec   (5366 perm/sec)   p_kst 3.745333e-01   p_cons 3.900000e-03   p_joint 1.396667e-01

Joint ci ratio: 5.937004e-02	ci left: 9.534980e-02	ci right 1.012087e-01	k: 3930	n:40000
Cons ci ratio: 3.000070e-01	ci left: 3.613074e-03	ci right 4.910520e-03	k: 169	n:40000
KS ci ratio: 2.540779e-02	ci left: 3.683075e-01	ci right 3.778109e-01	k: 14922	n:40000
IKBKB   40000 perm   8 sec   (5191 perm/sec)   p_kst 3.730500e-01   p_cons 4.225000e-03   p_joint 9.825000e-02

Joint ci ratio: 4.947179e-02	ci left: 1.087933e-01	ci right 1.143319e-01	k: 5577	n:50000
Cons ci ratio: 2.712345e-01	ci left: 3.596140e-03	ci right 4.742604e-03	k: 207	n:50000
KS ci ratio: 2.278357e-02	ci left: 3.676213e-01	ci right 3.761136e-01	k: 18593	n:50000
IKBKB   50000 perm   10 sec   (5084 perm/sec)   p_kst 3.718600e-01   p_cons 4.140000e-03   p_joint 1.115400e-01

Joint ci ratio: 4.026203e-02	ci left: 1.336796e-01	ci right 1.391890e-01	k: 8185	n:60000
Cons ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
KS ci ratio: 2.084662e-02	ci left: 3.669165e-01	ci right 3.746627e-01	k: 22247	n:60000
IKBKB   60000 perm   12 sec   (4964 perm/sec)   p_kst 3.707833e-01   p_cons 4.300000e-03   p_joint 1.364167e-01

Joint ci ratio: 3.904188e-02	ci left: 1.234226e-01	ci right 1.283513e-01	k: 8811	n:70000
Cons ci ratio: 2.269768e-01	ci left: 3.761374e-03	ci right 4.737567e-03	k: 296	n:70000
KS ci ratio: 1.926069e-02	ci left: 3.681610e-01	ci right 3.753353e-01	k: 26022	n:70000
IKBKB   70000 perm   14 sec   (4852 perm/sec)   p_kst 3.717429e-01   p_cons 4.228571e-03   p_joint 1.258714e-01

Joint ci ratio: 3.650141e-02	ci left: 1.236954e-01	ci right 1.283068e-01	k: 10079	n:80000
Cons ci ratio: 2.099784e-01	ci left: 3.882072e-03	ci right 4.804442e-03	k: 346	n:80000
KS ci ratio: 1.802568e-02	ci left: 3.681626e-01	ci right 3.748718e-01	k: 29721	n:80000
IKBKB   80000 perm   17 sec   (4756 perm/sec)   p_kst 3.715125e-01   p_cons 4.325000e-03   p_joint 1.259875e-01

Joint ci ratio: 3.427052e-02	ci left: 1.247429e-01	ci right 1.291034e-01	k: 11422	n:90000
Cons ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
KS ci ratio: 1.696418e-02	ci left: 3.691958e-01	ci right 3.755236e-01	k: 33512	n:90000
IKBKB   90000 perm   19 sec   (4663 perm/sec)   p_kst 3.723556e-01   p_cons 4.355556e-03   p_joint 1.269111e-01

Joint ci ratio: 3.108847e-02	ci left: 1.350433e-01	ci right 1.393178e-01	k: 13717	n:100000
Cons ci ratio: 1.881923e-01	ci left: 3.913412e-03	ci right 4.735746e-03	k: 431	n:100000
KS ci ratio: 1.608973e-02	ci left: 3.694723e-01	ci right 3.754751e-01	k: 37247	n:100000
IKBKB   100000 perm   22 sec   (4581 perm/sec)   p_kst 3.724700e-01   p_cons 4.310000e-03   p_joint 1.371700e-01

Joint ci ratio: 3.063482e-02	ci left: 1.275753e-01	ci right 1.315533e-01	k: 14251	n:110000
Cons ci ratio: 1.808154e-01	ci left: 3.869800e-03	ci right 4.647604e-03	k: 467	n:110000
KS ci ratio: 1.532212e-02	ci left: 3.701864e-01	ci right 3.759112e-01	k: 41035	n:110000
IKBKB   110000 perm   24 sec   (4498 perm/sec)   p_kst 3.730455e-01   p_cons 4.245455e-03   p_joint 1.295545e-01

Joint ci ratio: 3.048659e-02	ci left: 1.192426e-01	ci right 1.229424e-01	k: 14530	n:120000
Cons ci ratio: 1.747660e-01	ci left: 3.810070e-03	ci right 4.547542e-03	k: 500	n:120000
KS ci ratio: 1.467466e-02	ci left: 3.701546e-01	ci right 3.756349e-01	k: 44747	n:120000
IKBKB   120000 perm   27 sec   (4420 perm/sec)   p_kst 3.728917e-01   p_cons 4.166667e-03   p_joint 1.210833e-01

Joint ci ratio: 2.990214e-02	ci left: 1.150129e-01	ci right 1.185119e-01	k: 15178	n:130000
Cons ci ratio: 1.689682e-01	ci left: 3.774633e-03	ci right 4.478538e-03	k: 535	n:130000
KS ci ratio: 1.410661e-02	ci left: 3.700092e-01	ci right 3.752735e-01	k: 48443	n:130000
IKBKB   130000 perm   30 sec   (4350 perm/sec)   p_kst 3.726385e-01   p_cons 4.115385e-03   p_joint 1.167538e-01

Joint ci ratio: 3.092545e-02	ci left: 1.013557e-01	ci right 1.045465e-01	k: 14412	n:140000
Cons ci ratio: 1.635677e-01	ci left: 3.751457e-03	ci right 4.426480e-03	k: 571	n:140000
KS ci ratio: 1.360250e-02	ci left: 3.697954e-01	ci right 3.748671e-01	k: 52126	n:140000
IKBKB   140000 perm   33 sec   (4282 perm/sec)   p_kst 3.723286e-01   p_cons 4.078571e-03   p_joint 1.029429e-01

Joint ci ratio: 2.671354e-02	ci left: 1.238539e-01	ci right 1.272139e-01	k: 18829	n:150000
Cons ci ratio: 1.589166e-01	ci left: 3.718876e-03	ci right 4.367193e-03	k: 605	n:150000
KS ci ratio: 1.314602e-02	ci left: 3.697130e-01	ci right 3.746120e-01	k: 55824	n:150000
IKBKB   150000 perm   36 sec   (4218 perm/sec)   p_kst 3.721600e-01   p_cons 4.033333e-03   p_joint 1.255267e-01

Joint ci ratio: 2.595130e-02	ci left: 1.231843e-01	ci right 1.264293e-01	k: 19968	n:160000
Cons ci ratio: 1.535606e-01	ci left: 3.744694e-03	ci right 4.373486e-03	k: 648	n:160000
KS ci ratio: 1.273277e-02	ci left: 3.696371e-01	ci right 3.743800e-01	k: 59521	n:160000
IKBKB   160000 perm   38 sec   (4157 perm/sec)   p_kst 3.720062e-01   p_cons 4.050000e-03   p_joint 1.248000e-01

Joint ci ratio: 2.555923e-02	ci left: 1.199914e-01	ci right 1.231038e-01	k: 20662	n:170000
Cons ci ratio: 1.483894e-01	ci left: 3.784792e-03	ci right 4.397016e-03	k: 694	n:170000
KS ci ratio: 1.235542e-02	ci left: 3.696018e-01	ci right 3.742026e-01	k: 63223	n:170000
IKBKB   170000 perm   42 sec   (4095 perm/sec)   p_kst 3.719000e-01   p_cons 4.082353e-03   p_joint 1.215412e-01

Joint ci ratio: 2.466265e-02	ci left: 1.215579e-01	ci right 1.245987e-01	k: 22153	n:180000
Cons ci ratio: 1.423635e-01	ci left: 3.895754e-03	ci right 4.498165e-03	k: 754	n:180000
KS ci ratio: 1.200061e-02	ci left: 3.699273e-01	ci right 3.743990e-01	k: 66989	n:180000
IKBKB   180000 perm   45 sec   (4036 perm/sec)   p_kst 3.721611e-01   p_cons 4.188889e-03   p_joint 1.230722e-01

Joint ci ratio: 2.335275e-02	ci left: 1.276372e-01	ci right 1.306583e-01	k: 24537	n:190000
Cons ci ratio: 1.384744e-01	ci left: 3.909081e-03	ci right 4.495678e-03	k: 797	n:190000
KS ci ratio: 1.167944e-02	ci left: 3.700310e-01	ci right 3.743834e-01	k: 70719	n:190000
IKBKB   190000 perm   48 sec   (3979 perm/sec)   p_kst 3.722053e-01   p_cons 4.194737e-03   p_joint 1.291421e-01

Joint ci ratio: 2.373056e-02	ci left: 1.186286e-01	ci right 1.214824e-01	k: 24010	n:200000
Cons ci ratio: 1.344867e-01	ci left: 3.945438e-03	ci right 4.519077e-03	k: 845	n:200000
KS ci ratio: 1.137581e-02	ci left: 3.704105e-01	ci right 3.746532e-01	k: 74506	n:200000
IKBKB   200000 perm   51 sec   (3925 perm/sec)   p_kst 3.725300e-01   p_cons 4.225000e-03   p_joint 1.200500e-01

Joint ci ratio: 2.504474e-02	ci left: 1.031616e-01	ci right 1.057827e-01	k: 21938	n:210000
Cons ci ratio: 1.311197e-01	ci left: 3.960125e-03	ci right 4.520362e-03	k: 889	n:210000
KS ci ratio: 1.109548e-02	ci left: 3.707217e-01	ci right 3.748627e-01	k: 78286	n:210000
IKBKB   210000 perm   54 sec   (3869 perm/sec)   p_kst 3.727905e-01   p_cons 4.233333e-03   p_joint 1.044667e-01

Joint ci ratio: 2.212186e-02	ci left: 1.235167e-01	ci right 1.262841e-01	k: 27477	n:220000
Cons ci ratio: 1.290382e-01	ci left: 3.907641e-03	ci right 4.451005e-03	k: 918	n:220000
KS ci ratio: 1.084153e-02	ci left: 3.707198e-01	ci right 3.747654e-01	k: 82003	n:220000
IKBKB   220000 perm   58 sec   (3814 perm/sec)   p_kst 3.727409e-01   p_cons 4.172727e-03   p_joint 1.248955e-01

Joint ci ratio: 2.153082e-02	ci left: 1.246074e-01	ci right 1.273238e-01	k: 28971	n:230000
Cons ci ratio: 1.254678e-01	ci left: 3.960851e-03	ci right 4.495241e-03	k: 971	n:230000
KS ci ratio: 1.059874e-02	ci left: 3.709622e-01	ci right 3.749192e-01	k: 85776	n:230000
IKBKB   230000 perm   61 sec   (3764 perm/sec)   p_kst 3.729391e-01   p_cons 4.221739e-03   p_joint 1.259609e-01

Joint ci ratio: 2.075113e-02	ci left: 1.280969e-01	ci right 1.307870e-01	k: 31065	n:240000
Cons ci ratio: 1.225994e-01	ci left: 3.981538e-03	ci right 4.505546e-03	k: 1017	n:240000
KS ci ratio: 1.036758e-02	ci left: 3.713644e-01	ci right 3.752387e-01	k: 89592	n:240000
IKBKB   240000 perm   65 sec   (3715 perm/sec)   p_kst 3.733000e-01   p_cons 4.237500e-03   p_joint 1.294375e-01

Joint ci ratio: 2.033707e-02	ci left: 1.280667e-01	ci right 1.307019e-01	k: 32345	n:250000
Cons ci ratio: 1.204890e-01	ci left: 3.961896e-03	ci right 4.473704e-03	k: 1053	n:250000
KS ci ratio: 1.015890e-02	ci left: 3.713675e-01	ci right 3.751634e-01	k: 93316	n:250000
IKBKB   250000 perm   68 sec   (3668 perm/sec)   p_kst 3.732640e-01   p_cons 4.212000e-03   p_joint 1.293800e-01

Joint ci ratio: 2.004488e-02	ci left: 1.269440e-01	ci right 1.295181e-01	k: 33339	n:260000
Cons ci ratio: 1.180498e-01	ci left: 3.973698e-03	ci right 4.475914e-03	k: 1097	n:260000
KS ci ratio: 9.965365e-03	ci left: 3.712290e-01	ci right 3.749508e-01	k: 97003	n:260000
IKBKB   260000 perm   72 sec   (3622 perm/sec)   p_kst 3.730885e-01   p_cons 4.219231e-03   p_joint 1.282269e-01

Joint ci ratio: 2.212257e-02	ci left: 1.030205e-01	ci right 1.053287e-01	k: 28126	n:270000
Cons ci ratio: 1.156005e-01	ci left: 3.995514e-03	ci right 4.489295e-03	k: 1144	n:270000
KS ci ratio: 9.777758e-03	ci left: 3.713271e-01	ci right 3.749793e-01	k: 100751	n:270000
IKBKB   270000 perm   75 sec   (3579 perm/sec)   p_kst 3.731519e-01   p_cons 4.237037e-03   p_joint 1.041704e-01

Joint ci ratio: 2.018773e-02	ci left: 1.174793e-01	ci right 1.198786e-01	k: 33229	n:280000
Cons ci ratio: 1.133454e-01	ci left: 4.012401e-03	ci right 4.497948e-03	k: 1190	n:280000
KS ci ratio: 9.602414e-03	ci left: 3.713189e-01	ci right 3.749052e-01	k: 104471	n:280000
IKBKB   280000 perm   79 sec   (3537 perm/sec)   p_kst 3.731107e-01   p_cons 4.250000e-03   p_joint 1.186750e-01

Joint ci ratio: 1.989134e-02	ci left: 1.169275e-01	ci right 1.192801e-01	k: 34249	n:290000
Cons ci ratio: 1.115802e-01	ci left: 4.001390e-03	ci right 4.477567e-03	k: 1228	n:290000
KS ci ratio: 9.434857e-03	ci left: 3.713773e-01	ci right 3.749011e-01	k: 108210	n:290000
IKBKB   290000 perm   83 sec   (3496 perm/sec)   p_kst 3.731379e-01   p_cons 4.234483e-03   p_joint 1.181000e-01

Joint ci ratio: 1.965338e-02	ci left: 1.159315e-01	ci right 1.182359e-01	k: 35124	n:300000
Cons ci ratio: 1.101573e-01	ci left: 3.971715e-03	ci right 4.437943e-03	k: 1260	n:300000
KS ci ratio: 9.276237e-03	ci left: 3.714089e-01	ci right 3.748735e-01	k: 111942	n:300000
IKBKB   300000 perm   87 sec   (3457 perm/sec)   p_kst 3.731400e-01   p_cons 4.200000e-03   p_joint 1.170800e-01

Joint ci ratio: 1.922413e-02	ci left: 1.171265e-01	ci right 1.194032e-01	k: 36661	n:310000
Cons ci ratio: 1.081177e-01	ci left: 3.994210e-03	ci right 4.453844e-03	k: 1308	n:310000
KS ci ratio: 9.129009e-03	ci left: 3.712521e-01	ci right 3.746600e-01	k: 115616	n:310000
IKBKB   310000 perm   91 sec   (3419 perm/sec)   p_kst 3.729548e-01   p_cons 4.219355e-03   p_joint 1.182613e-01

Joint ci ratio: 1.897190e-02	ci left: 1.165916e-01	ci right 1.188278e-01	k: 37666	n:320000
Cons ci ratio: 1.069017e-01	ci left: 3.960616e-03	ci right 4.410936e-03	k: 1338	n:320000
KS ci ratio: 8.986712e-03	ci left: 3.712023e-01	ci right 3.745563e-01	k: 119321	n:320000
IKBKB   320000 perm   95 sec   (3382 perm/sec)   p_kst 3.728781e-01   p_cons 4.181250e-03   p_joint 1.177062e-01

Joint ci ratio: 2.140120e-02	ci left: 9.129641e-02	ci right 9.327439e-02	k: 30453	n:330000
Cons ci ratio: 1.050727e-01	ci left: 3.979248e-03	ci right 4.423467e-03	k: 1385	n:330000
KS ci ratio: 8.846568e-03	ci left: 3.713829e-01	ci right 3.746860e-01	k: 123101	n:330000
IKBKB   330000 perm   99 sec   (3345 perm/sec)   p_kst 3.730333e-01   p_cons 4.196970e-03   p_joint 9.228182e-02

Joint ci ratio: 2.010814e-02	ci left: 9.952644e-02	ci right 1.015510e-01	k: 34182	n:340000
Cons ci ratio: 1.037717e-01	ci left: 3.962462e-03	ci right 4.398996e-03	k: 1420	n:340000
KS ci ratio: 8.714205e-03	ci left: 3.714769e-01	ci right 3.747311e-01	k: 126855	n:340000
IKBKB   340000 perm   103 sec   (3308 perm/sec)   p_kst 3.731029e-01   p_cons 4.176471e-03   p_joint 1.005353e-01

Joint ci ratio: 1.970364e-02	ci left: 1.005953e-01	ci right 1.025999e-01	k: 35558	n:350000
Cons ci ratio: 1.022713e-01	ci left: 3.966157e-03	ci right 4.396401e-03	k: 1462	n:350000
KS ci ratio: 8.585776e-03	ci left: 3.716658e-01	ci right 3.748734e-01	k: 130644	n:350000
IKBKB   350000 perm   107 sec   (3272 perm/sec)   p_kst 3.732686e-01   p_cons 4.177143e-03   p_joint 1.015943e-01

Joint ci ratio: 2.159447e-02	ci left: 8.295211e-02	ci right 8.476571e-02	k: 30188	n:360000
Cons ci ratio: 1.010704e-01	ci left: 3.950735e-03	ci right 4.373974e-03	k: 1497	n:360000
KS ci ratio: 8.465876e-03	ci left: 3.716780e-01	ci right 3.748407e-01	k: 134373	n:360000
IKBKB   360000 perm   111 sec   (3236 perm/sec)   p_kst 3.732583e-01   p_cons 4.158333e-03   p_joint 8.385556e-02

Joint ci ratio: 1.797601e-02	ci left: 1.128619e-01	ci right 1.149117e-01	k: 42137	n:370000
Cons ci ratio: 9.971513e-02	ci left: 3.951987e-03	ci right 4.369351e-03	k: 1538	n:370000
KS ci ratio: 8.349753e-03	ci left: 3.717520e-01	ci right 3.748717e-01	k: 138125	n:370000
IKBKB   370000 perm   116 sec   (3198 perm/sec)   p_kst 3.733108e-01   p_cons 4.156757e-03   p_joint 1.138838e-01

Outputting figure to mutsig2_images.part000000000084/IKBKB.3_2355_370000_0.37331_0.0041568_0.11388.png
                gene_name: IKBKB
               theta_stop: 0.100 
                    nperm: 370000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.0042 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0044 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 47 percent done.
IKZF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
Cons ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
KS ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
IKZF3   10000 perm   2 sec   (6608 perm/sec)   p_kst 3.501000e-01   p_cons 7.402000e-01   p_joint 6.902000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF3.3_1562_10000_0.3501_0.7402_0.6902.png
                gene_name: IKZF3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 49 percent done.
IL12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 1.274646e-01	ci left: 8.086735e-02	ci right 9.197496e-02	k: 863	n:10000
KS ci ratio: 1.431370e-02	ci left: 8.759247e-01	ci right 8.886517e-01	k: 8824	n:10000
IL12A   10000 perm   1 sec   (7035 perm/sec)   p_kst 8.824000e-01   p_cons 8.630000e-02   p_joint 2.500000e-01

Joint ci ratio: 4.364641e-02	ci left: 2.810847e-01	ci right 2.936772e-01	k: 5747	n:20000
Cons ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
KS ci ratio: 1.021502e-02	ci left: 8.758733e-01	ci right 8.849158e-01	k: 17609	n:20000
IL12A   20000 perm   3 sec   (6103 perm/sec)   p_kst 8.804500e-01   p_cons 8.470000e-02   p_joint 2.873500e-01

Outputting figure to mutsig2_images.part000000000084/IL12A.3_790_20000_0.88045_0.0847_0.28735.png
                gene_name: IL12A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 51 percent done.
IL12RB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
Cons ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
KS ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
IL12RB1   10000 perm   2 sec   (6279 perm/sec)   p_kst 8.752000e-01   p_cons 4.768000e-01   p_joint 7.143000e-01

Outputting figure to mutsig2_images.part000000000084/IL12RB1.3_2186_10000_0.8752_0.4768_0.7143.png
                gene_name: IL12RB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 53 percent done.
IL13RA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
KS ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
IL13RA2   10000 perm   1 sec   (6671 perm/sec)   p_kst 8.462000e-01   p_cons 4.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL13RA2.3_1179_10000_0.8462_0.4879_1.png
                gene_name: IL13RA2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
IL17B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
KS ci ratio: 7.978778e-03	ci left: 9.562867e-01	ci right 9.640423e-01	k: 9603	n:10000
IL17B   10000 perm   1 sec   (7933 perm/sec)   p_kst 9.603000e-01   p_cons 5.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL17B.3_555_10000_0.9603_0.5134_1.png
                gene_name: IL17B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
IL17F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
KS ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
IL17F   10000 perm   1 sec   (7005 perm/sec)   p_kst 3.558000e-01   p_cons 9.341000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000084/IL17F.3_504_10000_0.3558_0.9341_0.5089.png
                gene_name: IL17F
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
IL17RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
Cons ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
IL17RA   10000 perm   2 sec   (6217 perm/sec)   p_kst 4.202000e-01   p_cons 5.792000e-01   p_joint 5.767000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RA.3_2653_10000_0.4202_0.5792_0.5767.png
                gene_name: IL17RA
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 60 percent done.
IL18R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
Cons ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
KS ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
IL18R1   10000 perm   2 sec   (6015 perm/sec)   p_kst 3.760000e-01   p_cons 4.964000e-01   p_joint 5.188000e-01

Outputting figure to mutsig2_images.part000000000084/IL18R1.3_1666_10000_0.376_0.4964_0.5188.png
                gene_name: IL18R1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 61 percent done.
IL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
Cons ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
KS ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
IL1A   10000 perm   1 sec   (6922 perm/sec)   p_kst 7.685000e-01   p_cons 1.784000e-01   p_joint 5.688000e-01

Outputting figure to mutsig2_images.part000000000084/IL1A.3_840_10000_0.7685_0.1784_0.5688.png
                gene_name: IL1A
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
IL1F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
KS ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
IL1F7   10000 perm   1 sec   (6938 perm/sec)   p_kst 4.339000e-01   p_cons 6.694000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F7.3_748_10000_0.4339_0.6694_0.7781.png
                gene_name: IL1F7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 65 percent done.
IL1F9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.203180e-02	ci left: 4.552854e-01	ci right 4.749349e-01	k: 4651	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
IL1F9   10000 perm   1 sec   (7016 perm/sec)   p_kst 2.443000e-01   p_cons 3.400000e-01   p_joint 4.651000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F9.3_526_10000_0.2443_0.34_0.4651.png
                gene_name: IL1F9
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 67 percent done.
IL20RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
Cons ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
KS ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
IL20RA   10000 perm   2 sec   (6393 perm/sec)   p_kst 2.745000e-01   p_cons 4.017000e-01   p_joint 4.084000e-01

Outputting figure to mutsig2_images.part000000000084/IL20RA.3_1690_10000_0.2745_0.4017_0.4084.png
                gene_name: IL20RA
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 68 percent done.
IL20RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
Cons ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
KS ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
IL20RB   10000 perm   2 sec   (6475 perm/sec)   p_kst 6.046000e-01   p_cons 6.419000e-01   p_joint 7.238000e-01

Outputting figure to mutsig2_images.part000000000084/IL20RB.3_964_10000_0.6046_0.6419_0.7238.png
                gene_name: IL20RB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 70 percent done.
IL24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
Cons ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
KS ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
IL24   10000 perm   1 sec   (6888 perm/sec)   p_kst 1.382000e-01   p_cons 7.190000e-02   p_joint 1.017000e-01

Joint ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
Cons ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
KS ci ratio: 6.959732e-02	ci left: 1.321148e-01	ci right 1.416910e-01	k: 2737	n:20000
IL24   20000 perm   3 sec   (6216 perm/sec)   p_kst 1.368500e-01   p_cons 6.985000e-02   p_joint 1.031000e-01

Joint ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
Cons ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
KS ci ratio: 5.569237e-02	ci left: 1.377718e-01	ci right 1.456977e-01	k: 4251	n:30000
IL24   30000 perm   5 sec   (5881 perm/sec)   p_kst 1.417000e-01   p_cons 6.950000e-02   p_joint 6.416667e-02

Outputting figure to mutsig2_images.part000000000084/IL24.3_648_30000_0.1417_0.0695_0.064167.png
                gene_name: IL24
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 72 percent done.
IL2RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
Cons ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
KS ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
IL2RA   10000 perm   1 sec   (7193 perm/sec)   p_kst 6.130000e-02   p_cons 8.490000e-02   p_joint 1.657000e-01

Joint ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
Cons ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
KS ci ratio: 1.097596e-01	ci left: 5.665039e-02	ci right 6.327826e-02	k: 1198	n:20000
IL2RA   20000 perm   3 sec   (6491 perm/sec)   p_kst 5.990000e-02   p_cons 8.390000e-02   p_joint 9.160000e-02

Joint ci ratio: 6.241573e-02	ci left: 1.125614e-01	ci right 1.198464e-01	k: 3485	n:30000
Cons ci ratio: 7.506126e-02	ci left: 8.019682e-02	ci right 8.648415e-02	k: 2499	n:30000
KS ci ratio: 9.022085e-02	ci left: 5.652296e-02	ci right 6.189613e-02	k: 1775	n:30000
IL2RA   30000 perm   5 sec   (6253 perm/sec)   p_kst 5.916667e-02   p_cons 8.330000e-02   p_joint 1.161667e-01

Outputting figure to mutsig2_images.part000000000084/IL2RA.3_851_30000_0.059167_0.0833_0.11617.png
                gene_name: IL2RA
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 74 percent done.
IL2RG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
Cons ci ratio: 1.443746e-02	ci left: 8.740836e-01	ci right 8.868938e-01	k: 8806	n:10000
KS ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
IL2RG   10000 perm   1 sec   (7050 perm/sec)   p_kst 4.175000e-01   p_cons 8.806000e-01   p_joint 7.406000e-01

Outputting figure to mutsig2_images.part000000000084/IL2RG.3_1142_10000_0.4175_0.8806_0.7406.png
                gene_name: IL2RG
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 75 percent done.
IKZF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
IKZF5   10000 perm   1 sec   (7250 perm/sec)   p_kst 1.586000e-01   p_cons 8.454000e-01   p_joint 8.391000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF5.2_1272_10000_0.1586_0.8454_0.8391.png
                gene_name: IKZF5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 77 percent done.
IL10RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
KS ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
IL10RB   10000 perm   1 sec   (7367 perm/sec)   p_kst 2.859000e-01   p_cons 5.076000e-01   p_joint 1.987000e-01

Outputting figure to mutsig2_images.part000000000084/IL10RB.2_1006_10000_0.2859_0.5076_0.1987.png
                gene_name: IL10RB
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
IL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
KS ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
IL15   10000 perm   1 sec   (7693 perm/sec)   p_kst 5.557000e-01   p_cons 3.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL15.2_513_10000_0.5557_0.3666_1.png
                gene_name: IL15
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
IL17RD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KS ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
IL17RD   10000 perm   2 sec   (6085 perm/sec)   p_kst 9.128000e-01   p_cons 4.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL17RD.2_2272_10000_0.9128_0.4692_1.png
                gene_name: IL17RD
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
IL1F10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
IL1F10   10000 perm   1 sec   (8130 perm/sec)   p_kst 2.074000e-01   p_cons 3.835000e-01   p_joint 1.927000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F10.2_475_10000_0.2074_0.3835_0.1927.png
                gene_name: IL1F10
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 84 percent done.
IL1F6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
KS ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
IL1F6   10000 perm   1 sec   (7743 perm/sec)   p_kst 6.132000e-01   p_cons 6.526000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL1F6.2_491_10000_0.6132_0.6526_1.png
                gene_name: IL1F6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
IL1F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
Cons ci ratio: 1.965582e-02	ci left: 7.911103e-01	ci right 8.069151e-01	k: 7991	n:10000
KS ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
IL1F8   10000 perm   1 sec   (7022 perm/sec)   p_kst 8.809000e-01   p_cons 7.991000e-01   p_joint 9.596000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F8.2_732_10000_0.8809_0.7991_0.9596.png
                gene_name: IL1F8
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 88 percent done.
IL1RAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
IL1RAP   10000 perm   2 sec   (6096 perm/sec)   p_kst 1.191000e-01   p_cons 4.442000e-01   p_joint 3.968000e-01

Joint ci ratio: 3.355911e-02	ci left: 3.986845e-01	ci right 4.123430e-01	k: 8110	n:20000
Cons ci ratio: 3.123952e-02	ci left: 4.335539e-01	ci right 4.473634e-01	k: 8809	n:20000
KS ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
IL1RAP   20000 perm   4 sec   (5606 perm/sec)   p_kst 1.177000e-01   p_cons 4.404500e-01   p_joint 4.055000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAP.2_2496_20000_0.1177_0.44045_0.4055.png
                gene_name: IL1RAP
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 89 percent done.
IL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
IL22   10000 perm   1 sec   (6921 perm/sec)   p_kst 2.720000e-01   p_cons 5.571000e-01   p_joint 5.242000e-01

Outputting figure to mutsig2_images.part000000000084/IL22.2_560_10000_0.272_0.5571_0.5242.png
                gene_name: IL22
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 91 percent done.
IL22RA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
Cons ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
KS ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
IL22RA2   10000 perm   1 sec   (6753 perm/sec)   p_kst 8.148000e-01   p_cons 3.513000e-01   p_joint 8.830000e-01

Outputting figure to mutsig2_images.part000000000084/IL22RA2.2_816_10000_0.8148_0.3513_0.883.png
                gene_name: IL22RA2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 93 percent done.
IL25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
IL25   10000 perm   1 sec   (7336 perm/sec)   p_kst 4.219000e-01   p_cons 3.400000e-01   p_joint 2.813000e-01

Outputting figure to mutsig2_images.part000000000084/IL25.2_555_10000_0.4219_0.34_0.2813.png
                gene_name: IL25
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 95 percent done.
IL28B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
Cons ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
KS ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
IL28B   10000 perm   1 sec   (7328 perm/sec)   p_kst 7.240000e-02   p_cons 3.753000e-01   p_joint 3.943000e-01

Joint ci ratio: 3.255686e-02	ci left: 4.133463e-01	ci right 4.270769e-01	k: 8404	n:20000
Cons ci ratio: 3.341686e-02	ci left: 4.007288e-01	ci right 4.143981e-01	k: 8151	n:20000
KS ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
IL28B   20000 perm   3 sec   (6492 perm/sec)   p_kst 7.230000e-02   p_cons 4.075500e-01   p_joint 4.202000e-01

Outputting figure to mutsig2_images.part000000000084/IL28B.2_610_20000_0.0723_0.40755_0.4202.png
                gene_name: IL28B
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 96 percent done.
IL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
Cons ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
KS ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
IL32   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.640000e-02   p_cons 8.720000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
Cons ci ratio: 8.824551e-02	ci left: 8.582360e-02	ci right 9.379612e-02	k: 1795	n:20000
KS ci ratio: 1.132152e-01	ci left: 5.333981e-02	ci right 5.978987e-02	k: 1130	n:20000
IL32   20000 perm   3 sec   (6114 perm/sec)   p_kst 5.650000e-02   p_cons 8.975000e-02   p_joint 3.775000e-02

Joint ci ratio: 1.218129e-01	ci left: 3.133070e-02	ci right 3.542698e-02	k: 1000	n:30000
Cons ci ratio: 7.165881e-02	ci left: 8.744057e-02	ci right 9.397227e-02	k: 2720	n:30000
KS ci ratio: 9.199587e-02	ci left: 5.443544e-02	ci right 5.971741e-02	k: 1711	n:30000
IL32   30000 perm   5 sec   (5837 perm/sec)   p_kst 5.703333e-02   p_cons 9.066667e-02   p_joint 3.333333e-02

Joint ci ratio: 1.105500e-01	ci left: 2.878783e-02	ci right 3.218078e-02	k: 1218	n:40000
Cons ci ratio: 6.217170e-02	ci left: 8.758252e-02	ci right 9.322711e-02	k: 3615	n:40000
KS ci ratio: 7.920598e-02	ci left: 5.541006e-02	ci right 6.000441e-02	k: 2307	n:40000
IL32   40000 perm   7 sec   (5652 perm/sec)   p_kst 5.767500e-02   p_cons 9.037500e-02   p_joint 3.045000e-02

Joint ci ratio: 1.094786e-01	ci left: 2.362969e-02	ci right 2.638583e-02	k: 1249	n:50000
Cons ci ratio: 5.539287e-02	ci left: 8.851259e-02	ci right 9.357501e-02	k: 4551	n:50000
KS ci ratio: 7.062359e-02	ci left: 5.598656e-02	ci right 6.010494e-02	k: 2901	n:50000
IL32   50000 perm   9 sec   (5526 perm/sec)   p_kst 5.802000e-02   p_cons 9.102000e-02   p_joint 2.498000e-02

Joint ci ratio: 1.009805e-01	ci left: 2.326145e-02	ci right 2.575150e-02	k: 1469	n:60000
Cons ci ratio: 5.055337e-02	ci left: 8.877608e-02	ci right 9.339689e-02	k: 5464	n:60000
KS ci ratio: 6.438596e-02	ci left: 5.630692e-02	ci right 6.006929e-02	k: 3490	n:60000
IL32   60000 perm   11 sec   (5399 perm/sec)   p_kst 5.816667e-02   p_cons 9.106667e-02   p_joint 2.448333e-02

Joint ci ratio: 9.394008e-02	ci left: 2.313006e-02	ci right 2.542389e-02	k: 1698	n:70000
Cons ci ratio: 4.664591e-02	ci left: 8.950118e-02	ci right 9.378988e-02	k: 6414	n:70000
KS ci ratio: 5.987438e-02	ci left: 5.596978e-02	ci right 5.943843e-02	k: 4038	n:70000
IL32   70000 perm   13 sec   (5276 perm/sec)   p_kst 5.768571e-02   p_cons 9.162857e-02   p_joint 2.425714e-02

Outputting figure to mutsig2_images.part000000000084/IL32.2_591_70000_0.057686_0.091629_0.024257.png
                gene_name: IL32
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 98 percent done.
IL33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
Cons ci ratio: 1.757246e-01	ci left: 4.322176e-02	ci right 5.164440e-02	k: 473	n:10000
KS ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
IL33   10000 perm   1 sec   (6837 perm/sec)   p_kst 1.590000e-01   p_cons 4.730000e-02   p_joint 1.253000e-01

Joint ci ratio: 1.486517e-01	ci left: 3.109744e-02	ci right 3.613934e-02	k: 671	n:20000
Cons ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
KS ci ratio: 6.255865e-02	ci left: 1.589418e-01	ci right 1.692560e-01	k: 3281	n:20000
IL33   20000 perm   3 sec   (6298 perm/sec)   p_kst 1.640500e-01   p_cons 4.655000e-02   p_joint 3.355000e-02

Joint ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
Cons ci ratio: 1.066384e-01	ci left: 4.079715e-02	ci right 4.542520e-02	k: 1292	n:30000
KS ci ratio: 5.120366e-02	ci left: 1.592323e-01	ci right 1.676330e-01	k: 4902	n:30000
IL33   30000 perm   5 sec   (6070 perm/sec)   p_kst 1.634000e-01   p_cons 4.306667e-02   p_joint 3.773333e-02

Joint ci ratio: 1.186794e-01	ci left: 2.497221e-02	ci right 2.814703e-02	k: 1061	n:40000
Cons ci ratio: 9.103535e-02	ci left: 4.227977e-02	ci right 4.633672e-02	k: 1771	n:40000
KS ci ratio: 4.422389e-02	ci left: 1.605320e-01	ci right 1.678168e-01	k: 6566	n:40000
IL33   40000 perm   7 sec   (5868 perm/sec)   p_kst 1.641500e-01   p_cons 4.427500e-02   p_joint 2.652500e-02

Joint ci ratio: 1.025744e-01	ci left: 2.692241e-02	ci right 2.985269e-02	k: 1418	n:50000
Cons ci ratio: 8.121390e-02	ci left: 4.270907e-02	ci right 4.634405e-02	k: 2225	n:50000
KS ci ratio: 3.963529e-02	ci left: 1.603672e-01	ci right 1.668719e-01	k: 8180	n:50000
IL33   50000 perm   9 sec   (5717 perm/sec)   p_kst 1.636000e-01   p_cons 4.450000e-02   p_joint 2.836000e-02

Joint ci ratio: 7.557341e-02	ci left: 4.129245e-02	ci right 4.455195e-02	k: 2574	n:60000
Cons ci ratio: 7.360882e-02	ci left: 4.346957e-02	ci right 4.680794e-02	k: 2707	n:60000
KS ci ratio: 3.623756e-02	ci left: 1.602345e-01	ci right 1.661648e-01	k: 9791	n:60000
IL33   60000 perm   11 sec   (5563 perm/sec)   p_kst 1.631833e-01   p_cons 4.511667e-02   p_joint 4.290000e-02

Outputting figure to mutsig2_images.part000000000084/IL33.2_841_60000_0.16318_0.045117_0.0429.png
                gene_name: IL33
               theta_stop: 0.076 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000084
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 84 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 4422071: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000085> was used as the working directory.
Started at Wed Oct 24 17:55:37 2012
Results reported at Wed Oct 24 18:20:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000085.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000085.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 85  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000085.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1523.66 sec.
    Max Memory :      5252 MB
    Max Swap   :      7736 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
85
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 85
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 85: processing genes 7600 - 7690
Calculating significance of each gene.
Using projection method.
7600	IL4	5.928861e-01
7601	IL4I1	5.165456e-01
7602	IL4R	9.827742e-01
7603	IL5	1
7604	IL5RA	5.643459e-01
7605	IL6	1
7606	IL6R	1.662635e-02
7607	IL6ST	1
7608	IL7	1
7609	IL7R	1
7610	IL8	1
7611	IL9	1
7612	IL9R	1.525920e-01
7613	ILDR1	8.999242e-01
7614	ILDR2	3.312484e-01
7615	ILF2	8.230551e-01
7616	ILF3	8.462499e-01
7617	ILK	9.307552e-01
7618	ILKAP	7.002897e-01
7619	ILVBL	1
7620	IMMP1L	6.379587e-01
7621	IMMP2L	4.408563e-01
7622	IMMT	9.712856e-01
7623	IMP3	1
7624	IMP4	7.641677e-01
7625	IMP5	9.289757e-01
7626	IMPA1	8.246615e-01
7627	IMPA2	8.738478e-01
7628	IMPACT	7.784621e-01
7629	IMPAD1	7.414524e-01
7630	IMPDH1	6.149950e-01
7631	IMPDH2	8.940548e-01
7632	IMPG1	1
7633	IMPG2	8.820863e-01
7634	INA	7.796375e-01
7635	INADL	9.992156e-01
7636	INCA1	1
7637	INCENP	8.302394e-01
7638	INF2	9.843671e-01
7639	ING1	8.214791e-01
7640	ING2	1
7641	ING3	6.047718e-01
7642	ING4	4.150473e-01
7643	ING5	5.328024e-01
7644	INHA	1
7645	INHBA	3.209652e-04
7646	INHBB	7.463186e-01
7647	INHBC	7.864224e-01
7648	INHBE	6.959091e-01
7649	INMT	9.205109e-02
7650	INO80	9.948293e-01
7651	INO80B	5.765171e-01
7652	INO80C	1.348796e-01
7653	INO80D	9.596691e-01
7654	INO80E	1
7655	INPP1	3.930938e-01
7656	INPP4A	9.622751e-01
7657	INPP4B	3.487535e-01
7658	INPP5A	7.666777e-01
7659	INPP5B	9.493323e-01
7660	INPP5D	1
7661	INPP5E	1
7662	INPP5F	9.658132e-01
7663	INPP5J	8.893408e-01
7664	INPP5K	1
7665	INPPL1	8.652413e-01
7666	INS	1
7667	INS-IGF2	6.890065e-02
7668	INSC	9.264511e-01
7669	INSIG1	6.178223e-01
7670	INSIG2	7.395476e-02
7671	INSL3	1
7672	INSL4	1.703062e-01
7673	INSL5	4.672961e-02
7674	INSL6	1.659531e-01
7675	INSM1	1
7676	INSM2	8.858461e-01
7677	INSR	1
7678	INSRR	4.579031e-01
7679	INTS1	9.990177e-01
7680	INTS10	9.886048e-01
7681	INTS12	2.885611e-01
7682	INTS2	1
7683	INTS3	9.360947e-01
7684	INTS4	3.661559e-01
7685	INTS5	5.503489e-01
7686	INTS6	9.518549e-01
7687	INTS7	1
7688	INTS8	9.741908e-01
7689	INTS9	9.310117e-01
7690	INTU	7.796505e-01
Done

Running MutSig 2:
Scatter job 85: processing genes 7600 - 7690
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
INADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
Cons ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
INADL   10000 perm   2 sec   (4201 perm/sec)   p_kst 6.871000e-01   p_cons 3.282000e-01   p_joint 5.948000e-01

Outputting figure to mutsig2_images.part000000000085/INADL.25_5574_10000_0.6871_0.3282_0.5948.png
                gene_name: INADL
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 2 percent done.
INHBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
Cons ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
KS ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
INHBA   10000 perm   2 sec   (5787 perm/sec)   p_kst 1.005000e-01   p_cons 3.110000e-02   p_joint 2.490000e-02

Joint ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
Cons ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
KS ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
INHBA   20000 perm   4 sec   (5184 perm/sec)   p_kst 9.615000e-02   p_cons 3.005000e-02   p_joint 1.660000e-02

Joint ci ratio: 1.697411e-01	ci left: 1.598253e-02	ci right 1.897863e-02	k: 523	n:30000
Cons ci ratio: 1.306482e-01	ci left: 2.722700e-02	ci right 3.106491e-02	k: 873	n:30000
KS ci ratio: 6.969054e-02	ci left: 9.206559e-02	ci right 9.874633e-02	k: 2861	n:30000
INHBA   30000 perm   6 sec   (4978 perm/sec)   p_kst 9.536667e-02   p_cons 2.910000e-02   p_joint 1.743333e-02

Joint ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
Cons ci ratio: 1.162291e-01	ci left: 2.604071e-02	ci right 2.927835e-02	k: 1105	n:40000
KS ci ratio: 6.016245e-02	ci left: 9.305597e-02	ci right 9.885284e-02	k: 3837	n:40000
INHBA   40000 perm   8 sec   (4827 perm/sec)   p_kst 9.592500e-02   p_cons 2.762500e-02   p_joint 2.092500e-02

Joint ci ratio: 1.400813e-01	ci left: 1.433888e-02	ci right 1.651791e-02	k: 770	n:50000
Cons ci ratio: 1.044453e-01	ci left: 2.596711e-02	ci right 2.884811e-02	k: 1369	n:50000
KS ci ratio: 5.373364e-02	ci left: 9.360917e-02	ci right 9.879782e-02	k: 4809	n:50000
INHBA   50000 perm   11 sec   (4714 perm/sec)   p_kst 9.618000e-02   p_cons 2.738000e-02   p_joint 1.540000e-02

Joint ci ratio: 1.359526e-01	ci left: 1.273681e-02	ci right 1.461067e-02	k: 819	n:60000
Cons ci ratio: 8.806504e-02	ci left: 3.055714e-02	ci right 3.338837e-02	k: 1917	n:60000
KS ci ratio: 4.936005e-02	ci left: 9.276402e-02	ci right 9.747523e-02	k: 5706	n:60000
INHBA   60000 perm   13 sec   (4622 perm/sec)   p_kst 9.510000e-02   p_cons 3.195000e-02   p_joint 1.365000e-02

Joint ci ratio: 1.148435e-01	ci left: 1.543043e-02	ci right 1.732426e-02	k: 1145	n:70000
Cons ci ratio: 8.203882e-02	ci left: 3.028840e-02	ci right 3.289347e-02	k: 2210	n:70000
KS ci ratio: 4.559333e-02	ci left: 9.333242e-02	ci right 9.770117e-02	k: 6685	n:70000
INHBA   70000 perm   15 sec   (4537 perm/sec)   p_kst 9.550000e-02   p_cons 3.157143e-02   p_joint 1.635714e-02

Joint ci ratio: 9.600901e-02	ci left: 1.943159e-02	ci right 2.140341e-02	k: 1632	n:80000
Cons ci ratio: 7.642636e-02	ci left: 3.061939e-02	ci right 3.306472e-02	k: 2546	n:80000
KS ci ratio: 4.291666e-02	ci left: 9.240716e-02	ci right 9.647231e-02	k: 7554	n:80000
INHBA   80000 perm   18 sec   (4455 perm/sec)   p_kst 9.442500e-02   p_cons 3.182500e-02   p_joint 2.040000e-02

Outputting figure to mutsig2_images.part000000000085/INHBA.15_1289_80000_0.094425_0.031825_0.0204.png
                gene_name: INHBA
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 4 percent done.
INPP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
Cons ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
INPP4B   10000 perm   2 sec   (5132 perm/sec)   p_kst 2.313000e-01   p_cons 6.941000e-01   p_joint 4.167000e-01

Outputting figure to mutsig2_images.part000000000085/INPP4B.14_2867_10000_0.2313_0.6941_0.4167.png
                gene_name: INPP4B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 6 percent done.
INSRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
INSRR   10000 perm   2 sec   (5022 perm/sec)   p_kst 7.046000e-01   p_cons 3.109000e-01   p_joint 6.851000e-01

Outputting figure to mutsig2_images.part000000000085/INSRR.14_3981_10000_0.7046_0.3109_0.6851.png
                gene_name: INSRR
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 8 percent done.
IMPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
KS ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
IMPG2   10000 perm   2 sec   (4852 perm/sec)   p_kst 3.401000e-01   p_cons 4.050000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000085/IMPG2.12_3802_10000_0.3401_0.405_0.5772.png
                gene_name: IMPG2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 10 percent done.
IL6R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
IL6R   10000 perm   2 sec   (5954 perm/sec)   p_kst 3.202000e-01   p_cons 9.430000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000085/IL6R.8_1447_10000_0.3202_0.943_0.4643.png
                gene_name: IL6R
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 12 percent done.
INPPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040082e-02	ci left: 9.292663e-01	ci right 9.390789e-01	k: 9343	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 2.467494e-02	ci left: 7.072516e-01	ci right 7.250223e-01	k: 7162	n:10000
INPPL1   10000 perm   2 sec   (5374 perm/sec)   p_kst 7.162000e-01   p_cons 5.730000e-01   p_joint 9.343000e-01

Outputting figure to mutsig2_images.part000000000085/INPPL1.8_3889_10000_0.7162_0.573_0.9343.png
                gene_name: INPPL1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 13 percent done.
INTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KS ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
INTS4   10000 perm   2 sec   (5638 perm/sec)   p_kst 1.879000e-01   p_cons 2.649000e-01   p_joint 2.322000e-01

Outputting figure to mutsig2_images.part000000000085/INTS4.8_2984_10000_0.1879_0.2649_0.2322.png
                gene_name: INTS4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 15 percent done.
INTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
Cons ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
KS ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
INTS5   10000 perm   2 sec   (5472 perm/sec)   p_kst 7.800000e-03   p_cons 8.229000e-01   p_joint 3.170000e-02

Joint ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
Cons ci ratio: 1.281753e-02	ci left: 8.184985e-01	ci right 8.291072e-01	k: 16477	n:20000
KS ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
INTS5   20000 perm   4 sec   (5007 perm/sec)   p_kst 8.750000e-03   p_cons 8.238500e-01   p_joint 1.935000e-02

Joint ci ratio: 1.499689e-01	ci left: 2.059463e-02	ci right 2.396544e-02	k: 667	n:30000
Cons ci ratio: 1.058950e-02	ci left: 8.160087e-01	ci right 8.247291e-01	k: 24612	n:30000
KS ci ratio: 2.401915e-01	ci left: 7.742931e-03	ci right 9.887152e-03	k: 263	n:30000
INTS5   30000 perm   6 sec   (4807 perm/sec)   p_kst 8.766667e-03   p_cons 8.204000e-01   p_joint 2.223333e-02

Joint ci ratio: 1.253233e-01	ci left: 2.237687e-02	ci right 2.539280e-02	k: 954	n:40000
Cons ci ratio: 9.168393e-03	ci left: 8.166782e-01	ci right 8.242252e-01	k: 32819	n:40000
KS ci ratio: 2.092154e-01	ci left: 7.789524e-03	ci right 9.632863e-03	k: 347	n:40000
INTS5   40000 perm   9 sec   (4684 perm/sec)   p_kst 8.675000e-03   p_cons 8.204750e-01   p_joint 2.385000e-02

Joint ci ratio: 1.229025e-01	ci left: 1.871321e-02	ci right 2.118297e-02	k: 996	n:50000
Cons ci ratio: 8.183587e-03	ci left: 8.176918e-01	ci right 8.244309e-01	k: 41054	n:50000
KS ci ratio: 1.900138e-01	ci left: 7.637733e-03	ci right 9.260113e-03	k: 421	n:50000
INTS5   50000 perm   11 sec   (4586 perm/sec)   p_kst 8.420000e-03   p_cons 8.210800e-01   p_joint 1.992000e-02

Joint ci ratio: 8.792308e-02	ci left: 3.065501e-02	ci right 3.349049e-02	k: 1923	n:60000
Cons ci ratio: 7.458590e-03	ci left: 8.184624e-01	ci right 8.246064e-01	k: 49293	n:60000
KS ci ratio: 1.719915e-01	ci left: 7.844769e-03	ci right 9.336682e-03	k: 514	n:60000
INTS5   60000 perm   13 sec   (4493 perm/sec)   p_kst 8.566667e-03   p_cons 8.215500e-01   p_joint 3.205000e-02

Joint ci ratio: 8.379652e-02	ci left: 2.904254e-02	ci right 3.159658e-02	k: 2121	n:70000
Cons ci ratio: 6.901432e-03	ci left: 8.188584e-01	ci right 8.245435e-01	k: 57520	n:70000
KS ci ratio: 1.586793e-01	ci left: 7.956706e-03	ci right 9.341629e-03	k: 604	n:70000
INTS5   70000 perm   16 sec   (4417 perm/sec)   p_kst 8.628571e-03   p_cons 8.217143e-01   p_joint 3.030000e-02

Joint ci ratio: 7.902774e-02	ci left: 2.865708e-02	ci right 3.102718e-02	k: 2386	n:80000
Cons ci ratio: 6.474724e-03	ci left: 8.181748e-01	ci right 8.235019e-01	k: 65668	n:80000
KS ci ratio: 1.477246e-01	ci left: 8.080133e-03	ci right 9.380870e-03	k: 697	n:80000
INTS5   80000 perm   18 sec   (4346 perm/sec)   p_kst 8.712500e-03   p_cons 8.208500e-01   p_joint 2.982500e-02

Joint ci ratio: 7.926509e-02	ci left: 2.540590e-02	ci right 2.751366e-02	k: 2380	n:90000
Cons ci ratio: 6.096235e-03	ci left: 8.187254e-01	ci right 8.237428e-01	k: 73912	n:90000
KS ci ratio: 1.391199e-01	ci left: 8.135781e-03	ci right 9.362864e-03	k: 786	n:90000
INTS5   90000 perm   21 sec   (4276 perm/sec)   p_kst 8.733333e-03   p_cons 8.212444e-01   p_joint 2.644444e-02

Joint ci ratio: 7.246572e-02	ci left: 2.739878e-02	ci right 2.946869e-02	k: 2842	n:100000
Cons ci ratio: 6.200218e-03	ci left: 7.973966e-01	ci right 8.023660e-01	k: 79989	n:100000
KS ci ratio: 1.318625e-01	ci left: 8.182061e-03	ci right 9.346701e-03	k: 875	n:100000
INTS5   100000 perm   24 sec   (4208 perm/sec)   p_kst 8.750000e-03   p_cons 7.998900e-01   p_joint 2.842000e-02

Joint ci ratio: 7.051363e-02	ci left: 2.636281e-02	ci right 2.829858e-02	k: 3005	n:110000
Cons ci ratio: 5.912664e-03	ci left: 7.974594e-01	ci right 8.021975e-01	k: 87982	n:110000
KS ci ratio: 1.251118e-01	ci left: 8.291752e-03	ci right 9.407102e-03	k: 972	n:110000
INTS5   110000 perm   27 sec   (4146 perm/sec)   p_kst 8.836364e-03   p_cons 7.998364e-01   p_joint 2.731818e-02

Joint ci ratio: 6.936343e-02	ci left: 2.502500e-02	ci right 2.683134e-02	k: 3110	n:120000
Cons ci ratio: 5.659376e-03	ci left: 7.976501e-01	ci right 8.021854e-01	k: 95991	n:120000
KS ci ratio: 1.196409e-01	ci left: 8.335909e-03	ci right 9.404695e-03	k: 1063	n:120000
INTS5   120000 perm   29 sec   (4084 perm/sec)   p_kst 8.858333e-03   p_cons 7.999250e-01   p_joint 2.591667e-02

Joint ci ratio: 6.724119e-02	ci left: 2.461957e-02	ci right 2.634015e-02	k: 3311	n:130000
Cons ci ratio: 5.430327e-03	ci left: 7.981549e-01	ci right 8.025086e-01	k: 104044	n:130000
KS ci ratio: 1.148300e-01	ci left: 8.374171e-03	ci right 9.401761e-03	k: 1154	n:130000
INTS5   130000 perm   32 sec   (4024 perm/sec)   p_kst 8.876923e-03   p_cons 8.003385e-01   p_joint 2.546923e-02

Joint ci ratio: 6.363992e-02	ci left: 2.554535e-02	ci right 2.723149e-02	k: 3693	n:140000
Cons ci ratio: 5.232020e-03	ci left: 7.982822e-01	ci right 8.024768e-01	k: 112054	n:140000
KS ci ratio: 1.105118e-01	ci left: 8.414652e-03	ci right 9.405849e-03	k: 1246	n:140000
INTS5   140000 perm   35 sec   (3966 perm/sec)   p_kst 8.900000e-03   p_cons 8.003857e-01   p_joint 2.637857e-02

Joint ci ratio: 6.364442e-02	ci left: 2.388103e-02	ci right 2.545741e-02	k: 3699	n:150000
Cons ci ratio: 5.061343e-03	ci left: 7.979265e-01	ci right 8.019819e-01	k: 119994	n:150000
KS ci ratio: 1.072136e-01	ci left: 8.359504e-03	ci right 9.312961e-03	k: 1324	n:150000
INTS5   150000 perm   38 sec   (3909 perm/sec)   p_kst 8.826667e-03   p_cons 7.999600e-01   p_joint 2.466000e-02

Joint ci ratio: 6.628043e-02	ci left: 2.068418e-02	ci right 2.210824e-02	k: 3422	n:160000
Cons ci ratio: 4.679178e-03	ci left: 8.124360e-01	ci right 8.162526e-01	k: 130296	n:160000
KS ci ratio: 1.033796e-01	ci left: 8.445596e-03	ci right 9.372331e-03	k: 1424	n:160000
INTS5   160000 perm   42 sec   (3855 perm/sec)   p_kst 8.900000e-03   p_cons 8.143500e-01   p_joint 2.138750e-02

Joint ci ratio: 6.498897e-02	ci left: 2.027155e-02	ci right 2.163898e-02	k: 3561	n:170000
Cons ci ratio: 4.528912e-03	ci left: 8.131990e-01	ci right 8.168961e-01	k: 138559	n:170000
KS ci ratio: 9.996245e-02	ci left: 8.516357e-03	ci right 9.418155e-03	k: 1523	n:170000
INTS5   170000 perm   45 sec   (3803 perm/sec)   p_kst 8.958824e-03   p_cons 8.150529e-01   p_joint 2.094706e-02

Outputting figure to mutsig2_images.part000000000085/INTS5.8_3068_170000_0.0089588_0.81505_0.020947.png
                gene_name: INTS5
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 17 percent done.
IL7R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
Cons ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
KS ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
IL7R   10000 perm   1 sec   (7116 perm/sec)   p_kst 3.860000e-02   p_cons 5.127000e-01   p_joint 1.209000e-01

Joint ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
Cons ci ratio: 2.714593e-02	ci left: 5.034459e-01	ci right 5.173511e-01	k: 10208	n:20000
KS ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
IL7R   20000 perm   3 sec   (6342 perm/sec)   p_kst 3.765000e-02   p_cons 5.104000e-01   p_joint 1.032000e-01

Joint ci ratio: 6.573734e-02	ci left: 1.024725e-01	ci right 1.094707e-01	k: 3178	n:30000
Cons ci ratio: 2.162014e-02	ci left: 5.171627e-01	ci right 5.284996e-01	k: 15685	n:30000
KS ci ratio: 1.149234e-01	ci left: 3.518393e-02	ci right 3.950626e-02	k: 1119	n:30000
IL7R   30000 perm   5 sec   (6027 perm/sec)   p_kst 3.730000e-02   p_cons 5.228333e-01   p_joint 1.059333e-01

Joint ci ratio: 6.469164e-02	ci left: 8.134868e-02	ci right 8.681188e-02	k: 3362	n:40000
Cons ci ratio: 1.872225e-02	ci left: 5.179662e-01	ci right 5.277805e-01	k: 20915	n:40000
KS ci ratio: 9.919391e-02	ci left: 3.570814e-02	ci right 3.945938e-02	k: 1502	n:40000
IL7R   40000 perm   7 sec   (5816 perm/sec)   p_kst 3.755000e-02   p_cons 5.228750e-01   p_joint 8.405000e-02

Outputting figure to mutsig2_images.part000000000085/IL7R.7_1412_40000_0.03755_0.52287_0.08405.png
                gene_name: IL7R
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 19 percent done.
INTU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
KS ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
INTU   10000 perm   2 sec   (5510 perm/sec)   p_kst 8.037000e-01   p_cons 4.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INTU.7_2893_10000_0.8037_0.4712_1.png
                gene_name: INTU
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
ILDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
ILDR2   10000 perm   2 sec   (6111 perm/sec)   p_kst 9.000000e-04   p_cons 5.159000e-01   p_joint 7.200000e-03

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 2.730387e-02	ci left: 5.005456e-01	ci right 5.144522e-01	k: 10150	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
ILDR2   20000 perm   4 sec   (5467 perm/sec)   p_kst 1.050000e-03   p_cons 5.075000e-01   p_joint 4.950000e-03

Joint ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
Cons ci ratio: 2.239836e-02	ci left: 4.994921e-01	ci right 5.108402e-01	k: 15155	n:30000
KS ci ratio: 6.718822e-01	ci left: 7.573066e-04	ci right 1.544465e-03	k: 33	n:30000
ILDR2   30000 perm   6 sec   (5236 perm/sec)   p_kst 1.100000e-03   p_cons 5.051667e-01   p_joint 3.700000e-03

Joint ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
Cons ci ratio: 1.942464e-02	ci left: 4.995626e-01	ci right 5.093867e-01	k: 20179	n:40000
KS ci ratio: 5.974655e-01	ci left: 7.568492e-04	ci right 1.419033e-03	k: 42	n:40000
ILDR2   40000 perm   8 sec   (5091 perm/sec)   p_kst 1.050000e-03   p_cons 5.044750e-01   p_joint 2.275000e-03

Joint ci ratio: 3.635368e-01	ci left: 1.899248e-03	ci right 2.760165e-03	k: 115	n:50000
Cons ci ratio: 1.733570e-02	ci left: 5.011874e-01	ci right 5.099719e-01	k: 25279	n:50000
KS ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
ILDR2   50000 perm   10 sec   (4974 perm/sec)   p_kst 9.600000e-04   p_cons 5.055800e-01   p_joint 2.300000e-03

Joint ci ratio: 3.345229e-01	ci left: 1.902072e-03	ci right 2.680657e-03	k: 136	n:60000
Cons ci ratio: 1.579097e-02	ci left: 5.026577e-01	ci right 5.106750e-01	k: 30400	n:60000
KS ci ratio: 5.100853e-01	ci left: 7.341098e-04	ci right 1.249464e-03	k: 58	n:60000
ILDR2   60000 perm   12 sec   (4869 perm/sec)   p_kst 9.666667e-04   p_cons 5.066667e-01   p_joint 2.266667e-03

Joint ci ratio: 3.333611e-01	ci left: 1.643397e-03	ci right 2.313250e-03	k: 137	n:70000
Cons ci ratio: 1.459697e-02	ci left: 5.037319e-01	ci right 5.111532e-01	k: 35521	n:70000
KS ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
ILDR2   70000 perm   15 sec   (4780 perm/sec)   p_kst 8.714286e-04   p_cons 5.074429e-01   p_joint 1.957143e-03

Joint ci ratio: 3.230170e-01	ci left: 1.541191e-03	ci right 2.145853e-03	k: 146	n:80000
Cons ci ratio: 1.364586e-02	ci left: 5.042792e-01	ci right 5.112203e-01	k: 40620	n:80000
KS ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
ILDR2   80000 perm   17 sec   (4689 perm/sec)   p_kst 9.250000e-04   p_cons 5.077500e-01   p_joint 1.825000e-03

Joint ci ratio: 2.033706e-01	ci left: 3.693025e-03	ci right 4.539429e-03	k: 369	n:90000
Cons ci ratio: 1.286533e-02	ci left: 5.044836e-01	ci right 5.110270e-01	k: 45698	n:90000
KS ci ratio: 4.249805e-01	ci left: 7.445294e-04	ci right 1.155402e-03	k: 84	n:90000
ILDR2   90000 perm   20 sec   (4606 perm/sec)   p_kst 9.333333e-04   p_cons 5.077556e-01   p_joint 4.100000e-03

Joint ci ratio: 1.941500e-01	ci left: 3.665808e-03	ci right 4.463381e-03	k: 405	n:100000
Cons ci ratio: 1.219698e-02	ci left: 5.049862e-01	ci right 5.111933e-01	k: 50809	n:100000
KS ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
ILDR2   100000 perm   22 sec   (4531 perm/sec)   p_kst 9.500000e-04   p_cons 5.080900e-01   p_joint 4.050000e-03

Joint ci ratio: 1.840013e-01	ci left: 3.730963e-03	ci right 4.495547e-03	k: 451	n:110000
Cons ci ratio: 1.139705e-02	ci left: 5.152149e-01	ci right 5.211296e-01	k: 56999	n:110000
KS ci ratio: 3.823685e-01	ci left: 7.725682e-04	ci right 1.145462e-03	k: 104	n:110000
ILDR2   110000 perm   25 sec   (4457 perm/sec)   p_kst 9.454545e-04   p_cons 5.181727e-01   p_joint 4.100000e-03

Joint ci ratio: 1.802685e-01	ci left: 3.571136e-03	ci right 4.286499e-03	k: 470	n:120000
Cons ci ratio: 1.090926e-02	ci left: 5.154600e-01	ci right 5.211224e-01	k: 62195	n:120000
KS ci ratio: 3.622259e-01	ci left: 7.988391e-04	ci right 1.159313e-03	k: 116	n:120000
ILDR2   120000 perm   27 sec   (4382 perm/sec)   p_kst 9.666667e-04   p_cons 5.182917e-01   p_joint 3.916667e-03

Joint ci ratio: 1.758545e-01	ci left: 3.472805e-03	ci right 4.149624e-03	k: 494	n:130000
Cons ci ratio: 1.091641e-02	ci left: 4.952398e-01	ci right 5.006834e-01	k: 64735	n:130000
KS ci ratio: 3.532859e-01	ci left: 7.793946e-04	ci right 1.120422e-03	k: 122	n:130000
ILDR2   130000 perm   30 sec   (4314 perm/sec)   p_kst 9.384615e-04   p_cons 4.979615e-01   p_joint 3.800000e-03

Joint ci ratio: 1.793666e-01	ci left: 3.095011e-03	ci right 3.711553e-03	k: 475	n:140000
Cons ci ratio: 1.052979e-02	ci left: 4.948417e-01	ci right 5.000870e-01	k: 69645	n:140000
KS ci ratio: 3.410301e-01	ci left: 7.824059e-04	ci right 1.110260e-03	k: 131	n:140000
ILDR2   140000 perm   33 sec   (4249 perm/sec)   p_kst 9.357143e-04   p_cons 4.974643e-01   p_joint 3.392857e-03

Joint ci ratio: 1.753670e-01	ci left: 3.028824e-03	ci right 3.617300e-03	k: 497	n:150000
Cons ci ratio: 1.017135e-02	ci left: 4.949998e-01	ci right 5.000670e-01	k: 74630	n:150000
KS ci ratio: 3.253798e-01	ci left: 8.096677e-04	ci right 1.130127e-03	k: 144	n:150000
ILDR2   150000 perm   36 sec   (4191 perm/sec)   p_kst 9.600000e-04   p_cons 4.975333e-01   p_joint 3.313333e-03

Joint ci ratio: 1.703139e-01	ci left: 3.018910e-03	ci right 3.586824e-03	k: 527	n:160000
Cons ci ratio: 9.845461e-03	ci left: 4.952283e-01	ci right 5.001343e-01	k: 79629	n:160000
KS ci ratio: 3.087828e-01	ci left: 8.511139e-04	ci right 1.167417e-03	k: 160	n:160000
ILDR2   160000 perm   39 sec   (4132 perm/sec)   p_kst 1.000000e-03   p_cons 4.976813e-01   p_joint 3.293750e-03

Joint ci ratio: 1.874925e-01	ci left: 2.324248e-03	ci right 2.810610e-03	k: 435	n:170000
Cons ci ratio: 9.550023e-03	ci left: 4.953792e-01	ci right 5.001386e-01	k: 84619	n:170000
KS ci ratio: 3.022842e-01	ci left: 8.390678e-04	ci right 1.143070e-03	k: 167	n:170000
ILDR2   170000 perm   42 sec   (4076 perm/sec)   p_kst 9.823529e-04   p_cons 4.977588e-01   p_joint 2.558824e-03

Joint ci ratio: 1.829359e-01	ci left: 2.311678e-03	ci right 2.782350e-03	k: 457	n:180000
Cons ci ratio: 9.277411e-03	ci left: 4.956375e-01	ci right 5.002626e-01	k: 89631	n:180000
KS ci ratio: 2.936703e-01	ci left: 8.438568e-04	ci right 1.139262e-03	k: 177	n:180000
ILDR2   180000 perm   45 sec   (4020 perm/sec)   p_kst 9.833333e-04   p_cons 4.979500e-01   p_joint 2.538889e-03

Joint ci ratio: 1.786961e-01	ci left: 2.300558e-03	ci right 2.756936e-03	k: 479	n:190000
Cons ci ratio: 9.032397e-03	ci left: 4.955650e-01	ci right 5.000667e-01	k: 94585	n:190000
KS ci ratio: 2.880630e-01	ci left: 8.335972e-04	ci right 1.118824e-03	k: 184	n:190000
ILDR2   190000 perm   48 sec   (3968 perm/sec)   p_kst 9.684211e-04   p_cons 4.978158e-01   p_joint 2.521053e-03

Joint ci ratio: 1.763298e-01	ci left: 2.247637e-03	ci right 2.686982e-03	k: 492	n:200000
Cons ci ratio: 8.799836e-03	ci left: 4.958413e-01	ci right 5.002288e-01	k: 99607	n:200000
KS ci ratio: 2.777425e-01	ci left: 8.569543e-04	ci right 1.137832e-03	k: 198	n:200000
ILDR2   200000 perm   51 sec   (3915 perm/sec)   p_kst 9.900000e-04   p_cons 4.980350e-01   p_joint 2.460000e-03

Joint ci ratio: 1.747485e-01	ci left: 2.181574e-03	ci right 2.603778e-03	k: 501	n:210000
Cons ci ratio: 8.586075e-03	ci left: 4.959925e-01	ci right 5.002742e-01	k: 104608	n:210000
KS ci ratio: 2.697277e-01	ci left: 8.693695e-04	ci right 1.144703e-03	k: 210	n:210000
ILDR2   210000 perm   54 sec   (3865 perm/sec)   p_kst 1.000000e-03   p_cons 4.981333e-01   p_joint 2.385714e-03

Joint ci ratio: 1.315038e-01	ci left: 3.758113e-03	ci right 4.291449e-03	k: 884	n:220000
Cons ci ratio: 8.390526e-03	ci left: 4.959312e-01	ci right 5.001143e-01	k: 109565	n:220000
KS ci ratio: 2.606200e-01	ci left: 8.935050e-04	ci right 1.165372e-03	k: 225	n:220000
ILDR2   220000 perm   58 sec   (3816 perm/sec)   p_kst 1.022727e-03   p_cons 4.980227e-01   p_joint 4.018182e-03

Joint ci ratio: 1.280053e-01	ci left: 3.800851e-03	ci right 4.324812e-03	k: 933	n:230000
Cons ci ratio: 8.207828e-03	ci left: 4.958719e-01	ci right 4.999630e-01	k: 114521	n:230000
KS ci ratio: 2.529023e-01	ci left: 9.116113e-04	ci right 1.179480e-03	k: 239	n:230000
ILDR2   230000 perm   61 sec   (3767 perm/sec)   p_kst 1.039130e-03   p_cons 4.979174e-01   p_joint 4.056522e-03

Joint ci ratio: 1.284310e-01	ci left: 3.618262e-03	ci right 4.118837e-03	k: 927	n:240000
Cons ci ratio: 8.037571e-03	ci left: 4.957559e-01	ci right 4.997608e-01	k: 119462	n:240000
KS ci ratio: 2.472983e-01	ci left: 9.165888e-04	ci right 1.179034e-03	k: 250	n:240000
ILDR2   240000 perm   65 sec   (3717 perm/sec)   p_kst 1.041667e-03   p_cons 4.977583e-01   p_joint 3.862500e-03

Joint ci ratio: 1.268725e-01	ci left: 3.562587e-03	ci right 4.049028e-03	k: 950	n:250000
Cons ci ratio: 7.878305e-03	ci left: 4.955981e-01	ci right 4.995220e-01	k: 124390	n:250000
KS ci ratio: 2.425147e-01	ci left: 9.174707e-04	ci right 1.174323e-03	k: 260	n:250000
ILDR2   250000 perm   68 sec   (3669 perm/sec)   p_kst 1.040000e-03   p_cons 4.975600e-01   p_joint 3.800000e-03

Joint ci ratio: 1.290799e-01	ci left: 3.306399e-03	ci right 3.766316e-03	k: 918	n:260000
Cons ci ratio: 7.727194e-03	ci left: 4.955147e-01	ci right 4.993623e-01	k: 129334	n:260000
KS ci ratio: 2.384392e-01	ci left: 9.147130e-04	ci right 1.165854e-03	k: 269	n:260000
ILDR2   260000 perm   72 sec   (3621 perm/sec)   p_kst 1.034615e-03   p_cons 4.974385e-01   p_joint 3.530769e-03

Joint ci ratio: 1.385610e-01	ci left: 2.750720e-03	ci right 3.163767e-03	k: 797	n:270000
Cons ci ratio: 7.580918e-03	ci left: 4.956715e-01	ci right 4.994471e-01	k: 134341	n:270000
KS ci ratio: 2.333102e-01	ci left: 9.226535e-04	ci right 1.169740e-03	k: 281	n:270000
ILDR2   270000 perm   76 sec   (3576 perm/sec)   p_kst 1.040741e-03   p_cons 4.975593e-01   p_joint 2.951852e-03

Joint ci ratio: 1.368590e-01	ci left: 2.721445e-03	ci right 3.124667e-03	k: 817	n:280000
Cons ci ratio: 7.445197e-03	ci left: 4.956463e-01	ci right 4.993538e-01	k: 139300	n:280000
KS ci ratio: 2.308690e-01	ci left: 9.098835e-04	ci right 1.150637e-03	k: 287	n:280000
ILDR2   280000 perm   79 sec   (3532 perm/sec)   p_kst 1.025000e-03   p_cons 4.975000e-01   p_joint 2.917857e-03

Joint ci ratio: 1.348154e-01	ci left: 2.710878e-03	ci right 3.106056e-03	k: 842	n:290000
Cons ci ratio: 7.307538e-03	ci left: 4.962372e-01	ci right 4.998801e-01	k: 144437	n:290000
KS ci ratio: 2.273446e-01	ci left: 9.077615e-04	ci right 1.143772e-03	k: 296	n:290000
ILDR2   290000 perm   83 sec   (3488 perm/sec)   p_kst 1.020690e-03   p_cons 4.980586e-01   p_joint 2.903448e-03

Joint ci ratio: 1.389311e-01	ci left: 2.462752e-03	ci right 2.833626e-03	k: 793	n:300000
Cons ci ratio: 7.183689e-03	ci left: 4.963392e-01	ci right 4.999209e-01	k: 149439	n:300000
KS ci ratio: 2.239768e-01	ci left: 9.058070e-04	ci right 1.137340e-03	k: 305	n:300000
ILDR2   300000 perm   87 sec   (3447 perm/sec)   p_kst 1.016667e-03   p_cons 4.981300e-01   p_joint 2.643333e-03

Joint ci ratio: 1.502707e-01	ci left: 2.025706e-03	ci right 2.357903e-03	k: 678	n:310000
Cons ci ratio: 7.068621e-03	ci left: 4.962448e-01	ci right 4.997682e-01	k: 154382	n:310000
KS ci ratio: 2.207544e-01	ci left: 9.040026e-04	ci right 1.131298e-03	k: 314	n:310000
ILDR2   310000 perm   91 sec   (3406 perm/sec)   p_kst 1.012903e-03   p_cons 4.980065e-01   p_joint 2.187097e-03

Joint ci ratio: 1.043498e-01	ci left: 4.161440e-03	ci right 4.622606e-03	k: 1404	n:320000
Cons ci ratio: 6.957431e-03	ci left: 4.962630e-01	ci right 4.997308e-01	k: 159359	n:320000
KS ci ratio: 2.160051e-01	ci left: 9.171105e-04	ci right 1.142083e-03	k: 328	n:320000
ILDR2   320000 perm   95 sec   (3367 perm/sec)   p_kst 1.025000e-03   p_cons 4.979969e-01   p_joint 4.387500e-03

Joint ci ratio: 1.027533e-01	ci left: 4.165216e-03	ci right 4.619312e-03	k: 1448	n:330000
Cons ci ratio: 6.850208e-03	ci left: 4.963623e-01	ci right 4.997771e-01	k: 164363	n:330000
KS ci ratio: 2.112417e-01	ci left: 9.323430e-04	ci right 1.155356e-03	k: 343	n:330000
ILDR2   330000 perm   99 sec   (3328 perm/sec)   p_kst 1.039394e-03   p_cons 4.980697e-01   p_joint 4.387879e-03

Joint ci ratio: 1.011938e-01	ci left: 4.171688e-03	ci right 4.619177e-03	k: 1493	n:340000
Cons ci ratio: 6.751327e-03	ci left: 4.961944e-01	ci right 4.995586e-01	k: 169278	n:340000
KS ci ratio: 2.079430e-01	ci left: 9.355763e-04	ci right 1.155423e-03	k: 354	n:340000
ILDR2   340000 perm   103 sec   (3290 perm/sec)   p_kst 1.041176e-03   p_cons 4.978765e-01   p_joint 4.391176e-03

Joint ci ratio: 1.415727e-01	ci left: 2.030948e-03	ci right 2.343100e-03	k: 764	n:350000
Cons ci ratio: 6.386070e-03	ci left: 5.167745e-01	ci right 5.200880e-01	k: 181451	n:350000
KS ci ratio: 2.047942e-01	ci left: 9.386502e-04	ci right 1.155461e-03	k: 365	n:350000
ILDR2   350000 perm   108 sec   (3253 perm/sec)   p_kst 1.042857e-03   p_cons 5.184314e-01   p_joint 2.182857e-03

Joint ci ratio: 1.418561e-01	ci left: 1.966490e-03	ci right 2.269391e-03	k: 761	n:360000
Cons ci ratio: 6.297182e-03	ci left: 5.167635e-01	ci right 5.200307e-01	k: 186623	n:360000
KS ci ratio: 2.023222e-01	ci left: 9.363022e-04	ci right 1.149638e-03	k: 374	n:360000
ILDR2   360000 perm   112 sec   (3216 perm/sec)   p_kst 1.038889e-03   p_cons 5.183972e-01   p_joint 2.113889e-03

Joint ci ratio: 1.393182e-01	ci left: 1.986357e-03	ci right 2.286390e-03	k: 789	n:370000
Cons ci ratio: 6.209283e-03	ci left: 5.169642e-01	ci right 5.201868e-01	k: 191873	n:370000
KS ci ratio: 1.994184e-01	ci left: 9.392314e-04	ci right 1.149790e-03	k: 385	n:370000
ILDR2   370000 perm   116 sec   (3180 perm/sec)   p_kst 1.040541e-03   p_cons 5.185757e-01   p_joint 2.132432e-03

Joint ci ratio: 1.375027e-01	ci left: 1.987434e-03	ci right 2.283397e-03	k: 810	n:380000
Cons ci ratio: 6.126966e-03	ci left: 5.169915e-01	ci right 5.201714e-01	k: 197061	n:380000
KS ci ratio: 1.966361e-01	ci left: 9.420271e-04	ci right 1.149913e-03	k: 396	n:380000
ILDR2   380000 perm   121 sec   (3147 perm/sec)   p_kst 1.042105e-03   p_cons 5.185816e-01   p_joint 2.131579e-03

Joint ci ratio: 1.351876e-01	ci left: 2.005822e-03	ci right 2.299090e-03	k: 838	n:390000
Cons ci ratio: 6.048831e-03	ci left: 5.169356e-01	ci right 5.200744e-01	k: 202217	n:390000
KS ci ratio: 1.942055e-01	ci left: 9.422590e-04	ci right 1.147322e-03	k: 406	n:390000
ILDR2   390000 perm   125 sec   (3112 perm/sec)   p_kst 1.041026e-03   p_cons 5.185051e-01   p_joint 2.148718e-03

Joint ci ratio: 1.336828e-01	ci left: 2.001578e-03	ci right 2.290709e-03	k: 857	n:400000
Cons ci ratio: 5.974060e-03	ci left: 5.168452e-01	ci right 5.199446e-01	k: 207358	n:400000
KS ci ratio: 1.914040e-01	ci left: 9.472547e-04	ci right 1.150085e-03	k: 418	n:400000
ILDR2   400000 perm   130 sec   (3079 perm/sec)   p_kst 1.045000e-03   p_cons 5.183950e-01   p_joint 2.142500e-03

Joint ci ratio: 1.318511e-01	ci left: 2.009352e-03	ci right 2.295318e-03	k: 881	n:410000
Cons ci ratio: 5.901188e-03	ci left: 5.168277e-01	ci right 5.198891e-01	k: 212527	n:410000
KS ci ratio: 1.891601e-01	ci left: 9.473794e-04	ci right 1.147585e-03	k: 428	n:410000
ILDR2   410000 perm   135 sec   (3046 perm/sec)   p_kst 1.043902e-03   p_cons 5.183585e-01   p_joint 2.148780e-03

Joint ci ratio: 1.177694e-01	ci left: 2.475971e-03	ci right 2.788097e-03	k: 1104	n:420000
Cons ci ratio: 5.830696e-03	ci left: 5.168304e-01	ci right 5.198550e-01	k: 217704	n:420000
KS ci ratio: 1.855186e-01	ci left: 9.634015e-04	ci right 1.162632e-03	k: 445	n:420000
ILDR2   420000 perm   139 sec   (3013 perm/sec)   p_kst 1.059524e-03   p_cons 5.183429e-01   p_joint 2.628571e-03

Joint ci ratio: 1.162534e-01	ci left: 2.483859e-03	ci right 2.792671e-03	k: 1133	n:430000
Cons ci ratio: 5.765114e-03	ci left: 5.166215e-01	ci right 5.196108e-01	k: 222790	n:430000
KS ci ratio: 1.832722e-01	ci left: 9.653975e-04	ci right 1.162355e-03	k: 456	n:430000
ILDR2   430000 perm   144 sec   (2982 perm/sec)   p_kst 1.060465e-03   p_cons 5.181163e-01   p_joint 2.634884e-03

Joint ci ratio: 1.196359e-01	ci left: 2.288435e-03	ci right 2.581815e-03	k: 1070	n:440000
Cons ci ratio: 5.697673e-03	ci left: 5.167746e-01	ci right 5.197297e-01	k: 228031	n:440000
KS ci ratio: 1.809121e-01	ci left: 9.694865e-04	ci right 1.164452e-03	k: 468	n:440000
ILDR2   440000 perm   149 sec   (2952 perm/sec)   p_kst 1.063636e-03   p_cons 5.182523e-01   p_joint 2.431818e-03

Joint ci ratio: 1.181016e-01	ci left: 2.297954e-03	ci right 2.588512e-03	k: 1098	n:450000
Cons ci ratio: 5.633873e-03	ci left: 5.168033e-01	ci right 5.197253e-01	k: 233219	n:450000
KS ci ratio: 1.788271e-01	ci left: 9.712863e-04	ci right 1.164119e-03	k: 479	n:450000
ILDR2   450000 perm   154 sec   (2922 perm/sec)   p_kst 1.064444e-03   p_cons 5.182644e-01   p_joint 2.440000e-03

Joint ci ratio: 1.177295e-01	ci left: 2.262764e-03	ci right 2.547909e-03	k: 1105	n:460000
Cons ci ratio: 5.570181e-03	ci left: 5.170092e-01	ci right 5.198992e-01	k: 238489	n:460000
KS ci ratio: 1.771741e-01	ci left: 9.688648e-04	ci right 1.159249e-03	k: 488	n:460000
ILDR2   460000 perm   159 sec   (2893 perm/sec)   p_kst 1.060870e-03   p_cons 5.184543e-01   p_joint 2.402174e-03

Joint ci ratio: 1.165243e-01	ci left: 2.262123e-03	ci right 2.544067e-03	k: 1128	n:470000
Cons ci ratio: 5.510454e-03	ci left: 5.170384e-01	ci right 5.198975e-01	k: 243680	n:470000
KS ci ratio: 1.753899e-01	ci left: 9.685885e-04	ci right 1.156798e-03	k: 498	n:470000
ILDR2   470000 perm   164 sec   (2865 perm/sec)   p_kst 1.059574e-03   p_cons 5.184681e-01   p_joint 2.400000e-03

Joint ci ratio: 1.182185e-01	ci left: 2.150278e-03	ci right 2.422452e-03	k: 1096	n:480000
Cons ci ratio: 5.452721e-03	ci left: 5.170562e-01	ci right 5.198853e-01	k: 248866	n:480000
KS ci ratio: 1.734881e-01	ci left: 9.703257e-04	ci right 1.156614e-03	k: 509	n:480000
ILDR2   480000 perm   169 sec   (2837 perm/sec)   p_kst 1.060417e-03   p_cons 5.184708e-01   p_joint 2.283333e-03

Joint ci ratio: 1.049932e-01	ci left: 2.687757e-03	ci right 2.987557e-03	k: 1389	n:490000
Cons ci ratio: 5.396546e-03	ci left: 5.170937e-01	ci right 5.198938e-01	k: 254062	n:490000
KS ci ratio: 1.711542e-01	ci left: 9.778627e-04	ci right 1.162812e-03	k: 523	n:490000
ILDR2   490000 perm   174 sec   (2810 perm/sec)   p_kst 1.067347e-03   p_cons 5.184939e-01   p_joint 2.834694e-03

Joint ci ratio: 1.042839e-01	ci left: 2.671006e-03	ci right 2.966802e-03	k: 1408	n:500000
Cons ci ratio: 5.341429e-03	ci left: 5.171899e-01	ci right 5.199618e-01	k: 259288	n:500000
KS ci ratio: 1.698629e-01	ci left: 9.736224e-04	ci right 1.156238e-03	k: 531	n:500000
ILDR2   500000 perm   180 sec   (2783 perm/sec)   p_kst 1.062000e-03   p_cons 5.185760e-01   p_joint 2.816000e-03

Joint ci ratio: 1.031550e-01	ci left: 2.677841e-03	ci right 2.970989e-03	k: 1439	n:510000
Cons ci ratio: 5.288715e-03	ci left: 5.172119e-01	ci right 5.199565e-01	k: 264478	n:510000
KS ci ratio: 1.684444e-01	ci left: 9.714317e-04	ci right 1.151960e-03	k: 540	n:510000
ILDR2   510000 perm   185 sec   (2758 perm/sec)   p_kst 1.058824e-03   p_cons 5.185843e-01   p_joint 2.821569e-03

Joint ci ratio: 1.022714e-01	ci left: 2.673186e-03	ci right 2.963167e-03	k: 1464	n:520000
Cons ci ratio: 5.237673e-03	ci left: 5.172197e-01	ci right 5.199378e-01	k: 269661	n:520000
KS ci ratio: 1.672130e-01	ci left: 9.674886e-04	ci right 1.145838e-03	k: 548	n:520000
ILDR2   520000 perm   190 sec   (2732 perm/sec)   p_kst 1.053846e-03   p_cons 5.185788e-01   p_joint 2.815385e-03

Joint ci ratio: 1.015126e-01	ci left: 2.663199e-03	ci right 2.949826e-03	k: 1486	n:530000
Cons ci ratio: 5.187610e-03	ci left: 5.172727e-01	ci right 5.199649e-01	k: 274868	n:530000
KS ci ratio: 1.658593e-01	ci left: 9.655074e-04	ci right 1.141907e-03	k: 557	n:530000
ILDR2   530000 perm   196 sec   (2706 perm/sec)   p_kst 1.050943e-03   p_cons 5.186189e-01   p_joint 2.803774e-03

Joint ci ratio: 1.005702e-01	ci left: 2.664422e-03	ci right 2.948361e-03	k: 1514	n:540000
Cons ci ratio: 5.140367e-03	ci left: 5.171867e-01	ci right 5.198539e-01	k: 280001	n:540000
KS ci ratio: 1.643929e-01	ci left: 9.653808e-04	ci right 1.140043e-03	k: 567	n:540000
ILDR2   540000 perm   201 sec   (2681 perm/sec)   p_kst 1.050000e-03   p_cons 5.185204e-01   p_joint 2.803704e-03

Joint ci ratio: 1.030939e-01	ci left: 2.486619e-03	ci right 2.758662e-03	k: 1441	n:550000
Cons ci ratio: 5.094260e-03	ci left: 5.171167e-01	ci right 5.197595e-01	k: 285141	n:550000
KS ci ratio: 1.629647e-01	ci left: 9.652655e-04	ci right 1.138241e-03	k: 577	n:550000
ILDR2   550000 perm   207 sec   (2656 perm/sec)   p_kst 1.049091e-03   p_cons 5.184382e-01   p_joint 2.620000e-03

Joint ci ratio: 1.022817e-01	ci left: 2.482232e-03	ci right 2.751527e-03	k: 1464	n:560000
Cons ci ratio: 5.049282e-03	ci left: 5.170582e-01	ci right 5.196773e-01	k: 290286	n:560000
KS ci ratio: 1.615730e-01	ci left: 9.651606e-04	ci right 1.136497e-03	k: 587	n:560000
ILDR2   560000 perm   213 sec   (2631 perm/sec)   p_kst 1.048214e-03   p_cons 5.183679e-01   p_joint 2.614286e-03

Joint ci ratio: 1.014543e-01	ci left: 2.479716e-03	ci right 2.746432e-03	k: 1488	n:570000
Cons ci ratio: 5.003875e-03	ci left: 5.171615e-01	ci right 5.197576e-01	k: 295522	n:570000
KS ci ratio: 1.600825e-01	ci left: 9.667496e-04	ci right 1.136633e-03	k: 598	n:570000
ILDR2   570000 perm   219 sec   (2607 perm/sec)   p_kst 1.049123e-03   p_cons 5.184596e-01   p_joint 2.610526e-03

Joint ci ratio: 1.004471e-01	ci left: 2.487381e-03	ci right 2.752109e-03	k: 1518	n:580000
Cons ci ratio: 4.961537e-03	ci left: 5.170735e-01	ci right 5.196470e-01	k: 300649	n:580000
KS ci ratio: 1.588935e-01	ci left: 9.649793e-04	ci right 1.133172e-03	k: 607	n:580000
ILDR2   580000 perm   225 sec   (2582 perm/sec)   p_kst 1.046552e-03   p_cons 5.183603e-01   p_joint 2.617241e-03

Joint ci ratio: 1.016643e-01	ci left: 2.385741e-03	ci right 2.642912e-03	k: 1482	n:590000
Cons ci ratio: 4.921258e-03	ci left: 5.168868e-01	ci right 5.194385e-01	k: 305716	n:590000
KS ci ratio: 1.577306e-01	ci left: 9.632736e-04	ci right 1.129824e-03	k: 616	n:590000
ILDR2   590000 perm   231 sec   (2558 perm/sec)   p_kst 1.044068e-03   p_cons 5.181627e-01   p_joint 2.511864e-03

Joint ci ratio: 1.021858e-01	ci left: 2.321612e-03	ci right 2.573231e-03	k: 1467	n:600000
Cons ci ratio: 4.880884e-03	ci left: 5.168148e-01	ci right 5.193451e-01	k: 310848	n:600000
KS ci ratio: 1.563430e-01	ci left: 9.648320e-04	ci right 1.130046e-03	k: 627	n:600000
ILDR2   600000 perm   237 sec   (2534 perm/sec)   p_kst 1.045000e-03   p_cons 5.180800e-01   p_joint 2.445000e-03

Joint ci ratio: 1.014972e-01	ci left: 2.315504e-03	ci right 2.564669e-03	k: 1487	n:610000
Cons ci ratio: 4.841058e-03	ci left: 5.167894e-01	ci right 5.192989e-01	k: 316007	n:610000
KS ci ratio: 1.548702e-01	ci left: 9.679214e-04	ci right 1.131958e-03	k: 639	n:610000
ILDR2   610000 perm   243 sec   (2513 perm/sec)   p_kst 1.047541e-03   p_cons 5.180443e-01   p_joint 2.437705e-03

Joint ci ratio: 1.020159e-01	ci left: 2.254576e-03	ci right 2.498498e-03	k: 1472	n:620000
Cons ci ratio: 4.801307e-03	ci left: 5.168570e-01	ci right 5.193461e-01	k: 321223	n:620000
KS ci ratio: 1.537928e-01	ci left: 9.662652e-04	ci right 1.128777e-03	k: 648	n:620000
ILDR2   620000 perm   249 sec   (2490 perm/sec)   p_kst 1.045161e-03   p_cons 5.181016e-01   p_joint 2.374194e-03

Joint ci ratio: 9.063638e-02	ci left: 2.826109e-03	ci right 3.095954e-03	k: 1864	n:630000
Cons ci ratio: 4.763110e-03	ci left: 5.168605e-01	ci right 5.193298e-01	k: 326400	n:630000
KS ci ratio: 1.523902e-01	ci left: 9.692457e-04	ci right 1.130637e-03	k: 660	n:630000
ILDR2   630000 perm   255 sec   (2468 perm/sec)   p_kst 1.047619e-03   p_cons 5.180952e-01   p_joint 2.958730e-03

Joint ci ratio: 9.039574e-02	ci left: 2.797220e-03	ci right 3.063561e-03	k: 1874	n:640000
Cons ci ratio: 4.725160e-03	ci left: 5.169328e-01	ci right 5.193827e-01	k: 331621	n:640000
KS ci ratio: 1.506895e-01	ci left: 9.766504e-04	ci right 1.137296e-03	k: 675	n:640000
ILDR2   640000 perm   261 sec   (2448 perm/sec)   p_kst 1.054688e-03   p_cons 5.181578e-01   p_joint 2.928125e-03

Joint ci ratio: 9.081159e-02	ci left: 2.728620e-03	ci right 2.989688e-03	k: 1857	n:650000
Cons ci ratio: 4.688348e-03	ci left: 5.169767e-01	ci right 5.194077e-01	k: 336825	n:650000
KS ci ratio: 1.498059e-01	ci left: 9.734698e-04	ci right 1.132569e-03	k: 683	n:650000
ILDR2   650000 perm   268 sec   (2427 perm/sec)   p_kst 1.050769e-03   p_cons 5.181923e-01   p_joint 2.856923e-03

Joint ci ratio: 9.023102e-02	ci left: 2.722818e-03	ci right 2.981577e-03	k: 1881	n:660000
Cons ci ratio: 4.653781e-03	ci left: 5.168694e-01	ci right 5.192819e-01	k: 341930	n:660000
KS ci ratio: 1.488302e-01	ci left: 9.718471e-04	ci right 1.129555e-03	k: 692	n:660000
ILDR2   660000 perm   274 sec   (2407 perm/sec)   p_kst 1.048485e-03   p_cons 5.180758e-01   p_joint 2.850000e-03

Joint ci ratio: 8.977961e-02	ci left: 2.709898e-03	ci right 2.966073e-03	k: 1900	n:670000
Cons ci ratio: 4.619442e-03	ci left: 5.168221e-01	ci right 5.192165e-01	k: 347073	n:670000
KS ci ratio: 1.482968e-01	ci left: 9.645269e-04	ci right 1.120436e-03	k: 697	n:670000
ILDR2   670000 perm   281 sec   (2387 perm/sec)   p_kst 1.040299e-03   p_cons 5.180194e-01   p_joint 2.835821e-03

Joint ci ratio: 8.910250e-02	ci left: 2.711739e-03	ci right 2.966055e-03	k: 1929	n:680000
Cons ci ratio: 4.585096e-03	ci left: 5.168586e-01	ci right 5.192353e-01	k: 352272	n:680000
KS ci ratio: 1.467281e-01	ci left: 9.715876e-04	ci right 1.126831e-03	k: 712	n:680000
ILDR2   680000 perm   287 sec   (2367 perm/sec)   p_kst 1.047059e-03   p_cons 5.180471e-01   p_joint 2.836765e-03

Joint ci ratio: 8.821498e-02	ci left: 2.727708e-03	ci right 2.980842e-03	k: 1968	n:690000
Cons ci ratio: 4.551135e-03	ci left: 5.169347e-01	ci right 5.192941e-01	k: 357499	n:690000
KS ci ratio: 1.447115e-01	ci left: 9.854359e-04	ci right 1.140541e-03	k: 732	n:690000
ILDR2   690000 perm   294 sec   (2348 perm/sec)   p_kst 1.060870e-03   p_cons 5.181145e-01   p_joint 2.852174e-03

Joint ci ratio: 8.774877e-02	ci left: 2.718080e-03	ci right 2.968919e-03	k: 1989	n:700000
Cons ci ratio: 4.518434e-03	ci left: 5.169515e-01	ci right 5.192940e-01	k: 362686	n:700000
KS ci ratio: 1.444170e-01	ci left: 9.754886e-04	ci right 1.128689e-03	k: 735	n:700000
ILDR2   700000 perm   301 sec   (2329 perm/sec)   p_kst 1.050000e-03   p_cons 5.181229e-01   p_joint 2.841429e-03

Joint ci ratio: 8.692219e-02	ci left: 2.732151e-03	ci right 2.981792e-03	k: 2027	n:710000
Cons ci ratio: 4.486112e-03	ci left: 5.170032e-01	ci right 5.193291e-01	k: 367898	n:710000
KS ci ratio: 1.432538e-01	ci left: 9.780426e-04	ci right 1.130301e-03	k: 747	n:710000
ILDR2   710000 perm   307 sec   (2310 perm/sec)   p_kst 1.052113e-03   p_cons 5.181662e-01   p_joint 2.854930e-03

Joint ci ratio: 8.733515e-02	ci left: 2.668386e-03	ci right 2.913419e-03	k: 2008	n:720000
Cons ci ratio: 4.454994e-03	ci left: 5.169951e-01	ci right 5.193048e-01	k: 373068	n:720000
KS ci ratio: 1.420247e-01	ci left: 9.818700e-04	ci right 1.133302e-03	k: 760	n:720000
ILDR2   720000 perm   314 sec   (2292 perm/sec)   p_kst 1.055556e-03   p_cons 5.181500e-01   p_joint 2.788889e-03

Joint ci ratio: 8.922715e-02	ci left: 2.519296e-03	ci right 2.755911e-03	k: 1924	n:730000
Cons ci ratio: 4.424806e-03	ci left: 5.169544e-01	ci right 5.192482e-01	k: 378214	n:730000
KS ci ratio: 1.407357e-01	ci left: 9.869196e-04	ci right 1.137633e-03	k: 774	n:730000
ILDR2   730000 perm   321 sec   (2274 perm/sec)   p_kst 1.060274e-03   p_cons 5.181014e-01   p_joint 2.635616e-03

Joint ci ratio: 8.865342e-02	ci left: 2.518284e-03	ci right 2.753204e-03	k: 1949	n:740000
Cons ci ratio: 4.395152e-03	ci left: 5.169230e-01	ci right 5.192012e-01	k: 383366	n:740000
KS ci ratio: 1.401047e-01	ci left: 9.827098e-04	ci right 1.132051e-03	k: 781	n:740000
ILDR2   740000 perm   328 sec   (2257 perm/sec)   p_kst 1.055405e-03   p_cons 5.180622e-01   p_joint 2.633784e-03

Joint ci ratio: 8.820263e-02	ci left: 2.510783e-03	ci right 2.743751e-03	k: 1969	n:750000
Cons ci ratio: 4.366483e-03	ci left: 5.168471e-01	ci right 5.191101e-01	k: 388484	n:750000
KS ci ratio: 1.395707e-01	ci left: 9.773270e-04	ci right 1.125237e-03	k: 787	n:750000
ILDR2   750000 perm   335 sec   (2240 perm/sec)   p_kst 1.049333e-03   p_cons 5.179787e-01   p_joint 2.625333e-03

Joint ci ratio: 8.758232e-02	ci left: 2.513779e-03	ci right 2.745301e-03	k: 1997	n:760000
Cons ci ratio: 4.337876e-03	ci left: 5.168298e-01	ci right 5.190779e-01	k: 393645	n:760000
KS ci ratio: 1.386066e-01	ci left: 9.784375e-04	ci right 1.125408e-03	k: 798	n:760000
ILDR2   760000 perm   342 sec   (2223 perm/sec)   p_kst 1.050000e-03   p_cons 5.179539e-01   p_joint 2.627632e-03

Joint ci ratio: 8.708271e-02	ci left: 2.510350e-03	ci right 2.740170e-03	k: 2020	n:770000
Cons ci ratio: 4.309734e-03	ci left: 5.168235e-01	ci right 5.190569e-01	k: 398814	n:770000
KS ci ratio: 1.377474e-01	ci left: 9.782685e-04	ci right 1.124228e-03	k: 808	n:770000
ILDR2   770000 perm   349 sec   (2207 perm/sec)   p_kst 1.049351e-03   p_cons 5.179403e-01   p_joint 2.623377e-03

Joint ci ratio: 8.689042e-02	ci left: 2.489453e-03	ci right 2.716831e-03	k: 2029	n:780000
Cons ci ratio: 4.281814e-03	ci left: 5.168545e-01	ci right 5.190736e-01	k: 404012	n:780000
KS ci ratio: 1.368203e-01	ci left: 9.793449e-04	ci right 1.124402e-03	k: 819	n:780000
ILDR2   780000 perm   356 sec   (2191 perm/sec)   p_kst 1.050000e-03   p_cons 5.179641e-01   p_joint 2.601282e-03

Joint ci ratio: 8.747704e-02	ci left: 2.424505e-03	ci right 2.647522e-03	k: 2002	n:790000
Cons ci ratio: 4.254042e-03	ci left: 5.169304e-01	ci right 5.191353e-01	k: 409246	n:790000
KS ci ratio: 1.359117e-01	ci left: 9.803972e-04	ci right 1.124567e-03	k: 830	n:790000
ILDR2   790000 perm   363 sec   (2174 perm/sec)   p_kst 1.050633e-03   p_cons 5.180329e-01   p_joint 2.534177e-03

Joint ci ratio: 8.761007e-02	ci left: 2.386861e-03	ci right 2.606766e-03	k: 1996	n:800000
Cons ci ratio: 4.227321e-03	ci left: 5.169431e-01	ci right 5.191342e-01	k: 414431	n:800000
KS ci ratio: 1.351817e-01	ci left: 9.790106e-04	ci right 1.122142e-03	k: 839	n:800000
ILDR2   800000 perm   371 sec   (2158 perm/sec)   p_kst 1.048750e-03   p_cons 5.180387e-01   p_joint 2.495000e-03

Joint ci ratio: 8.730517e-02	ci left: 2.374299e-03	ci right 2.592247e-03	k: 2010	n:810000
Cons ci ratio: 4.202043e-03	ci left: 5.168433e-01	ci right 5.190208e-01	k: 419525	n:810000
KS ci ratio: 1.343842e-01	ci left: 9.788535e-04	ci right 1.121050e-03	k: 849	n:810000
ILDR2   810000 perm   378 sec   (2143 perm/sec)   p_kst 1.048148e-03   p_cons 5.179321e-01   p_joint 2.481481e-03

Joint ci ratio: 9.472437e-02	ci left: 1.985401e-03	ci right 2.183997e-03	k: 1708	n:820000
Cons ci ratio: 4.176437e-03	ci left: 5.168385e-01	ci right 5.190028e-01	k: 424695	n:820000
KS ci ratio: 1.334455e-01	ci left: 9.810602e-04	ci right 1.122502e-03	k: 861	n:820000
ILDR2   820000 perm   385 sec   (2128 perm/sec)   p_kst 1.050000e-03   p_cons 5.179207e-01   p_joint 2.082927e-03

Joint ci ratio: 9.431172e-02	ci left: 1.979125e-03	ci right 2.176183e-03	k: 1723	n:830000
Cons ci ratio: 4.150893e-03	ci left: 5.168822e-01	ci right 5.190333e-01	k: 429905	n:830000
KS ci ratio: 1.329838e-01	ci left: 9.762280e-04	ci right 1.116448e-03	k: 867	n:830000
ILDR2   830000 perm   393 sec   (2113 perm/sec)   p_kst 1.044578e-03   p_cons 5.179578e-01   p_joint 2.075904e-03

Joint ci ratio: 9.368871e-02	ci left: 1.982301e-03	ci right 2.178301e-03	k: 1746	n:840000
Cons ci ratio: 4.126521e-03	ci left: 5.168391e-01	ci right 5.189774e-01	k: 435043	n:840000
KS ci ratio: 1.316998e-01	ci left: 9.841746e-04	ci right 1.124065e-03	k: 884	n:840000
ILDR2   840000 perm   400 sec   (2099 perm/sec)   p_kst 1.052381e-03   p_cons 5.179083e-01   p_joint 2.078571e-03

Joint ci ratio: 9.305155e-02	ci left: 1.986556e-03	ci right 2.181568e-03	k: 1770	n:850000
Cons ci ratio: 4.101538e-03	ci left: 5.169230e-01	ci right 5.190487e-01	k: 440288	n:850000
KS ci ratio: 1.306701e-01	ci left: 9.885263e-04	ci right 1.127851e-03	k: 898	n:850000
ILDR2   850000 perm   408 sec   (2084 perm/sec)   p_kst 1.056471e-03   p_cons 5.179859e-01   p_joint 2.082353e-03

Joint ci ratio: 9.286895e-02	ci left: 1.971406e-03	ci right 2.164530e-03	k: 1777	n:860000
Cons ci ratio: 4.077156e-03	ci left: 5.169863e-01	ci right 5.190996e-01	k: 445517	n:860000
KS ci ratio: 1.300927e-01	ci left: 9.860306e-04	ci right 1.124342e-03	k: 906	n:860000
ILDR2   860000 perm   416 sec   (2069 perm/sec)   p_kst 1.053488e-03   p_cons 5.180430e-01   p_joint 2.066279e-03

Joint ci ratio: 9.308012e-02	ci left: 1.939763e-03	ci right 2.130243e-03	k: 1769	n:870000
Cons ci ratio: 4.053175e-03	ci left: 5.170517e-01	ci right 5.191528e-01	k: 450749	n:870000
KS ci ratio: 1.287505e-01	ci left: 9.958293e-04	ci right 1.133964e-03	k: 925	n:870000
ILDR2   870000 perm   424 sec   (2052 perm/sec)   p_kst 1.063218e-03   p_cons 5.181023e-01   p_joint 2.033333e-03

Joint ci ratio: 9.271452e-02	ci left: 1.933260e-03	ci right 2.122315e-03	k: 1783	n:880000
Cons ci ratio: 4.031071e-03	ci left: 5.169349e-01	ci right 5.190240e-01	k: 455822	n:880000
KS ci ratio: 1.282669e-01	ci left: 9.922117e-04	ci right 1.129288e-03	k: 932	n:880000
ILDR2   880000 perm   432 sec   (2038 perm/sec)   p_kst 1.059091e-03   p_cons 5.179795e-01   p_joint 2.026136e-03

Joint ci ratio: 9.227607e-02	ci left: 1.930197e-03	ci right 2.118011e-03	k: 1800	n:890000
Cons ci ratio: 4.007773e-03	ci left: 5.170141e-01	ci right 5.190914e-01	k: 461067	n:890000
KS ci ratio: 1.276528e-01	ci left: 9.908519e-04	ci right 1.127036e-03	k: 941	n:890000
ILDR2   890000 perm   440 sec   (2024 perm/sec)   p_kst 1.057303e-03   p_cons 5.180528e-01   p_joint 2.022472e-03

Joint ci ratio: 9.194520e-02	ci left: 1.922862e-03	ci right 2.109255e-03	k: 1813	n:900000
Cons ci ratio: 3.985317e-03	ci left: 5.170360e-01	ci right 5.191017e-01	k: 466262	n:900000
KS ci ratio: 1.271814e-01	ci left: 9.873722e-04	ci right 1.122539e-03	k: 948	n:900000
ILDR2   900000 perm   448 sec   (2011 perm/sec)   p_kst 1.053333e-03   p_cons 5.180689e-01   p_joint 2.014444e-03

Joint ci ratio: 7.962877e-02	ci left: 2.550256e-03	ci right 2.762819e-03	k: 2416	n:910000
Cons ci ratio: 3.963566e-03	ci left: 5.170156e-01	ci right 5.190700e-01	k: 471419	n:910000
KS ci ratio: 1.267152e-01	ci left: 9.839699e-04	ci right 1.118140e-03	k: 955	n:910000
ILDR2   910000 perm   456 sec   (1997 perm/sec)   p_kst 1.049451e-03   p_cons 5.180429e-01   p_joint 2.654945e-03

Joint ci ratio: 8.043470e-02	ci left: 2.471402e-03	ci right 2.679575e-03	k: 2368	n:920000
Cons ci ratio: 3.942132e-03	ci left: 5.170001e-01	ci right 5.190433e-01	k: 476580	n:920000
KS ci ratio: 1.262540e-01	ci left: 9.806424e-04	ci right 1.113835e-03	k: 962	n:920000
ILDR2   920000 perm   464 sec   (1984 perm/sec)   p_kst 1.045652e-03   p_cons 5.180217e-01   p_joint 2.573913e-03

Joint ci ratio: 8.006396e-02	ci left: 2.468009e-03	ci right 2.674893e-03	k: 2390	n:930000
Cons ci ratio: 3.920182e-03	ci left: 5.170946e-01	ci right 5.191268e-01	k: 481843	n:930000
KS ci ratio: 1.256036e-01	ci left: 9.805118e-04	ci right 1.112950e-03	k: 972	n:930000
ILDR2   930000 perm   472 sec   (1971 perm/sec)   p_kst 1.045161e-03   p_cons 5.181108e-01   p_joint 2.569892e-03

Joint ci ratio: 7.974801e-02	ci left: 2.461562e-03	ci right 2.667054e-03	k: 2409	n:940000
Cons ci ratio: 3.899093e-03	ci left: 5.171233e-01	ci right 5.191446e-01	k: 487046	n:940000
KS ci ratio: 1.247727e-01	ci left: 9.834776e-04	ci right 1.115373e-03	k: 985	n:940000
ILDR2   940000 perm   480 sec   (1958 perm/sec)   p_kst 1.047872e-03   p_cons 5.181340e-01   p_joint 2.562766e-03

Joint ci ratio: 7.945218e-02	ci left: 2.454221e-03	ci right 2.658305e-03	k: 2427	n:950000
Cons ci ratio: 3.878421e-03	ci left: 5.171410e-01	ci right 5.191516e-01	k: 492239	n:950000
KS ci ratio: 1.238340e-01	ci left: 9.884239e-04	ci right 1.119912e-03	k: 1000	n:950000
ILDR2   950000 perm   488 sec   (1945 perm/sec)   p_kst 1.052632e-03   p_cons 5.181463e-01   p_joint 2.554737e-03

Joint ci ratio: 7.922458e-02	ci left: 2.442950e-03	ci right 2.645487e-03	k: 2441	n:960000
Cons ci ratio: 3.857810e-03	ci left: 5.171926e-01	ci right 5.191927e-01	k: 497465	n:960000
KS ci ratio: 1.229768e-01	ci left: 9.922611e-04	ci right 1.123279e-03	k: 1014	n:960000
ILDR2   960000 perm   497 sec   (1932 perm/sec)   p_kst 1.056250e-03   p_cons 5.181927e-01   p_joint 2.542708e-03

Joint ci ratio: 7.890236e-02	ci left: 2.437975e-03	ci right 2.639240e-03	k: 2461	n:970000
Cons ci ratio: 3.837270e-03	ci left: 5.172762e-01	ci right 5.192660e-01	k: 502723	n:970000
KS ci ratio: 1.222561e-01	ci left: 9.940233e-04	ci right 1.124449e-03	k: 1026	n:970000
ILDR2   970000 perm   505 sec   (1919 perm/sec)   p_kst 1.057732e-03   p_cons 5.182711e-01   p_joint 2.537113e-03

Joint ci ratio: 7.845737e-02	ci left: 2.441107e-03	ci right 2.641443e-03	k: 2489	n:980000
Cons ci ratio: 3.817102e-03	ci left: 5.173520e-01	ci right 5.193316e-01	k: 507975	n:980000
KS ci ratio: 1.214310e-01	ci left: 9.977307e-04	ci right 1.127696e-03	k: 1040	n:980000
ILDR2   980000 perm   514 sec   (1906 perm/sec)   p_kst 1.061224e-03   p_cons 5.183418e-01   p_joint 2.539796e-03

Joint ci ratio: 7.808203e-02	ci left: 2.440218e-03	ci right 2.639478e-03	k: 2513	n:990000
Cons ci ratio: 3.797908e-03	ci left: 5.173394e-01	ci right 5.193089e-01	k: 513141	n:990000
KS ci ratio: 1.209673e-01	ci left: 9.954883e-04	ci right 1.124631e-03	k: 1048	n:990000
ILDR2   990000 perm   523 sec   (1894 perm/sec)   p_kst 1.058586e-03   p_cons 5.183242e-01   p_joint 2.538384e-03

Joint ci ratio: 7.768135e-02	ci left: 2.441309e-03	ci right 2.639590e-03	k: 2539	n:1000000
Cons ci ratio: 3.779009e-03	ci left: 5.173261e-01	ci right 5.192858e-01	k: 518306	n:1000000
KS ci ratio: 1.202812e-01	ci left: 9.971714e-04	ci right 1.125747e-03	k: 1060	n:1000000
ILDR2   1000000 perm   532 sec   (1881 perm/sec)   p_kst 1.060000e-03   p_cons 5.183060e-01   p_joint 2.539000e-03

Joint ci ratio: 7.318312e-02	ci left: 2.728984e-03	ci right 2.937250e-03	k: 2860	n:1010000
Cons ci ratio: 3.760695e-03	ci left: 5.172725e-01	ci right 5.192224e-01	k: 523430	n:1010000
KS ci ratio: 1.196624e-01	ci left: 9.978627e-04	ci right 1.125818e-03	k: 1071	n:1010000
ILDR2   1010000 perm   540 sec   (1870 perm/sec)   p_kst 1.060396e-03   p_cons 5.182475e-01   p_joint 2.831683e-03

Joint ci ratio: 7.765264e-02	ci left: 2.395361e-03	ci right 2.589834e-03	k: 2541	n:1020000
Cons ci ratio: 3.741330e-03	ci left: 5.173955e-01	ci right 5.193358e-01	k: 528733	n:1020000
KS ci ratio: 1.196072e-01	ci left: 9.890305e-04	ci right 1.115791e-03	k: 1072	n:1020000
ILDR2   1020000 perm   549 sec   (1858 perm/sec)   p_kst 1.050980e-03   p_cons 5.183657e-01   p_joint 2.491176e-03

Joint ci ratio: 7.802369e-02	ci left: 2.349255e-03	ci right 2.540938e-03	k: 2517	n:1030000
Cons ci ratio: 3.723700e-03	ci left: 5.173229e-01	ci right 5.192537e-01	k: 533837	n:1030000
KS ci ratio: 1.188343e-01	ci left: 9.926153e-04	ci right 1.118955e-03	k: 1086	n:1030000
ILDR2   1030000 perm   558 sec   (1846 perm/sec)   p_kst 1.054369e-03   p_cons 5.182883e-01   p_joint 2.443689e-03

Joint ci ratio: 7.710907e-02	ci left: 2.383241e-03	ci right 2.575316e-03	k: 2577	n:1040000
Cons ci ratio: 3.706674e-03	ci left: 5.172036e-01	ci right 5.191252e-01	k: 538891	n:1040000
KS ci ratio: 1.161387e-01	ci left: 1.030670e-03	ci right 1.158674e-03	k: 1137	n:1040000
ILDR2   1040000 perm   567 sec   (1834 perm/sec)   p_kst 1.093269e-03   p_cons 5.181644e-01   p_joint 2.477885e-03

Joint ci ratio: 7.669359e-02	ci left: 2.386698e-03	ci right 2.577968e-03	k: 2605	n:1050000
Cons ci ratio: 3.689570e-03	ci left: 5.171285e-01	ci right 5.190409e-01	k: 543989	n:1050000
KS ci ratio: 1.154809e-01	ci left: 1.032876e-03	ci right 1.160378e-03	k: 1150	n:1050000
ILDR2   1050000 perm   576 sec   (1823 perm/sec)   p_kst 1.095238e-03   p_cons 5.180848e-01   p_joint 2.480952e-03

Joint ci ratio: 7.629927e-02	ci left: 2.389166e-03	ci right 2.579606e-03	k: 2632	n:1060000
Cons ci ratio: 3.671756e-03	ci left: 5.171832e-01	ci right 5.190865e-01	k: 549223	n:1060000
KS ci ratio: 1.145880e-01	ci left: 1.039625e-03	ci right 1.166900e-03	k: 1168	n:1060000
ILDR2   1060000 perm   585 sec   (1812 perm/sec)   p_kst 1.101887e-03   p_cons 5.181349e-01   p_joint 2.483019e-03

Joint ci ratio: 7.586809e-02	ci left: 2.394342e-03	ci right 2.584068e-03	k: 2662	n:1070000
Cons ci ratio: 3.654451e-03	ci left: 5.172023e-01	ci right 5.190967e-01	k: 554420	n:1070000
KS ci ratio: 1.138596e-01	ci left: 1.043527e-03	ci right 1.170414e-03	k: 1183	n:1070000
ILDR2   1070000 perm   594 sec   (1801 perm/sec)   p_kst 1.105607e-03   p_cons 5.181495e-01   p_joint 2.487850e-03

Joint ci ratio: 7.582617e-02	ci left: 2.374896e-03	ci right 2.562973e-03	k: 2665	n:1080000
Cons ci ratio: 3.637699e-03	ci left: 5.171784e-01	ci right 5.190641e-01	k: 559571	n:1080000
KS ci ratio: 1.133818e-01	ci left: 1.042861e-03	ci right 1.169099e-03	k: 1193	n:1080000
ILDR2   1080000 perm   604 sec   (1789 perm/sec)   p_kst 1.104630e-03   p_cons 5.181213e-01   p_joint 2.467593e-03

Joint ci ratio: 7.548717e-02	ci left: 2.374710e-03	ci right 2.561894e-03	k: 2689	n:1090000
Cons ci ratio: 3.620796e-03	ci left: 5.172073e-01	ci right 5.190843e-01	k: 564779	n:1090000
KS ci ratio: 1.128631e-01	ci left: 1.043099e-03	ci right 1.168750e-03	k: 1204	n:1090000
ILDR2   1090000 perm   613 sec   (1779 perm/sec)   p_kst 1.104587e-03   p_cons 5.181459e-01   p_joint 2.466972e-03

Joint ci ratio: 7.506955e-02	ci left: 2.379881e-03	ci right 2.566390e-03	k: 2719	n:1100000
Cons ci ratio: 3.604264e-03	ci left: 5.172166e-01	ci right 5.190851e-01	k: 569966	n:1100000
KS ci ratio: 1.121670e-01	ci left: 1.046869e-03	ci right 1.172145e-03	k: 1219	n:1100000
ILDR2   1100000 perm   622 sec   (1768 perm/sec)   p_kst 1.108182e-03   p_cons 5.181509e-01   p_joint 2.471818e-03

Joint ci ratio: 7.577174e-02	ci left: 2.314242e-03	ci right 2.497379e-03	k: 2669	n:1110000
Cons ci ratio: 3.588241e-03	ci left: 5.171862e-01	ci right 5.190462e-01	k: 575109	n:1110000
KS ci ratio: 1.115287e-01	ci left: 1.049698e-03	ci right 1.174550e-03	k: 1233	n:1110000
ILDR2   1110000 perm   632 sec   (1757 perm/sec)   p_kst 1.110811e-03   p_cons 5.181162e-01   p_joint 2.404505e-03

Joint ci ratio: 7.548968e-02	ci left: 2.311099e-03	ci right 2.493275e-03	k: 2689	n:1120000
Cons ci ratio: 3.572053e-03	ci left: 5.172089e-01	ci right 5.190606e-01	k: 580311	n:1120000
KS ci ratio: 1.111691e-01	ci left: 1.047270e-03	ci right 1.171405e-03	k: 1241	n:1120000
ILDR2   1120000 perm   641 sec   (1747 perm/sec)   p_kst 1.108036e-03   p_cons 5.181348e-01   p_joint 2.400893e-03

Joint ci ratio: 7.859728e-02	ci left: 2.110112e-03	ci right 2.283606e-03	k: 2481	n:1130000
Cons ci ratio: 3.556303e-03	ci left: 5.172004e-01	ci right 5.190438e-01	k: 585478	n:1130000
KS ci ratio: 1.109463e-01	ci left: 1.042303e-03	ci right 1.165586e-03	k: 1246	n:1130000
ILDR2   1130000 perm   651 sec   (1737 perm/sec)   p_kst 1.102655e-03   p_cons 5.181221e-01   p_joint 2.195575e-03

Joint ci ratio: 7.869342e-02	ci left: 2.086442e-03	ci right 2.258209e-03	k: 2475	n:1140000
Cons ci ratio: 3.540709e-03	ci left: 5.171989e-01	ci right 5.190343e-01	k: 590653	n:1140000
KS ci ratio: 1.104602e-01	ci left: 1.042542e-03	ci right 1.165278e-03	k: 1257	n:1140000
ILDR2   1140000 perm   660 sec   (1727 perm/sec)   p_kst 1.102632e-03   p_cons 5.181167e-01   p_joint 2.171053e-03

Joint ci ratio: 7.848794e-02	ci left: 2.079380e-03	ci right 2.250099e-03	k: 2488	n:1150000
Cons ci ratio: 3.525718e-03	ci left: 5.171411e-01	ci right 5.189684e-01	k: 595763	n:1150000
KS ci ratio: 1.101543e-01	ci left: 1.039396e-03	ci right 1.161400e-03	k: 1264	n:1150000
ILDR2   1150000 perm   670 sec   (1716 perm/sec)   p_kst 1.099130e-03   p_cons 5.180548e-01   p_joint 2.163478e-03

Joint ci ratio: 7.883862e-02	ci left: 2.042861e-03	ci right 2.211365e-03	k: 2466	n:1160000
Cons ci ratio: 3.510752e-03	ci left: 5.171075e-01	ci right 5.189269e-01	k: 600900	n:1160000
KS ci ratio: 1.095926e-01	ci left: 1.041334e-03	ci right 1.162903e-03	k: 1277	n:1160000
ILDR2   1160000 perm   680 sec   (1706 perm/sec)   p_kst 1.100862e-03   p_cons 5.180172e-01   p_joint 2.125862e-03

Joint ci ratio: 7.850520e-02	ci left: 2.042996e-03	ci right 2.210766e-03	k: 2487	n:1170000
Cons ci ratio: 3.495945e-03	ci left: 5.170787e-01	ci right 5.188904e-01	k: 606042	n:1170000
KS ci ratio: 1.092088e-01	ci left: 1.039916e-03	ci right 1.160866e-03	k: 1286	n:1170000
ILDR2   1170000 perm   690 sec   (1696 perm/sec)   p_kst 1.099145e-03   p_cons 5.179846e-01   p_joint 2.125641e-03

Joint ci ratio: 7.823851e-02	ci left: 2.039807e-03	ci right 2.206720e-03	k: 2504	n:1180000
Cons ci ratio: 3.480727e-03	ci left: 5.171361e-01	ci right 5.189401e-01	k: 611285	n:1180000
KS ci ratio: 1.089132e-01	ci left: 1.036873e-03	ci right 1.157123e-03	k: 1293	n:1180000
ILDR2   1180000 perm   700 sec   (1686 perm/sec)   p_kst 1.095763e-03   p_cons 5.180381e-01   p_joint 2.122034e-03

Joint ci ratio: 7.792808e-02	ci left: 2.039144e-03	ci right 2.205311e-03	k: 2524	n:1190000
Cons ci ratio: 3.466593e-03	ci left: 5.170648e-01	ci right 5.188612e-01	k: 616376	n:1190000
KS ci ratio: 1.083701e-01	ci left: 1.038788e-03	ci right 1.158620e-03	k: 1306	n:1190000
ILDR2   1190000 perm   710 sec   (1677 perm/sec)   p_kst 1.097479e-03   p_cons 5.179630e-01   p_joint 2.121008e-03

Joint ci ratio: 7.766720e-02	ci left: 2.036042e-03	ci right 2.201376e-03	k: 2541	n:1200000
Cons ci ratio: 3.452174e-03	ci left: 5.170605e-01	ci right 5.188494e-01	k: 621546	n:1200000
KS ci ratio: 1.079990e-01	ci left: 1.037428e-03	ci right 1.156668e-03	k: 1315	n:1200000
ILDR2   1200000 perm   720 sec   (1668 perm/sec)   p_kst 1.095833e-03   p_cons 5.179550e-01   p_joint 2.117500e-03

Joint ci ratio: 7.280599e-02	ci left: 2.303046e-03	ci right 2.477862e-03	k: 2891	n:1210000
Cons ci ratio: 3.437655e-03	ci left: 5.170968e-01	ci right 5.188783e-01	k: 626765	n:1210000
KS ci ratio: 1.077131e-01	ci left: 1.034483e-03	ci right 1.153050e-03	k: 1322	n:1210000
ILDR2   1210000 perm   730 sec   (1658 perm/sec)   p_kst 1.092562e-03   p_cons 5.179876e-01   p_joint 2.389256e-03

Joint ci ratio: 7.336829e-02	ci left: 2.248760e-03	ci right 2.420829e-03	k: 2847	n:1220000
Cons ci ratio: 3.423598e-03	ci left: 5.170916e-01	ci right 5.188657e-01	k: 631934	n:1220000
KS ci ratio: 1.072681e-01	ci left: 1.034778e-03	ci right 1.152857e-03	k: 1333	n:1220000
ILDR2   1220000 perm   740 sec   (1649 perm/sec)   p_kst 1.092623e-03   p_cons 5.179787e-01   p_joint 2.333607e-03

Joint ci ratio: 7.311212e-02	ci left: 2.246440e-03	ci right 2.417706e-03	k: 2867	n:1230000
Cons ci ratio: 3.409524e-03	ci left: 5.171141e-01	ci right 5.188810e-01	k: 637137	n:1230000
KS ci ratio: 1.069081e-01	ci left: 1.033486e-03	ci right 1.150997e-03	k: 1342	n:1230000
ILDR2   1230000 perm   750 sec   (1640 perm/sec)   p_kst 1.091057e-03   p_cons 5.179976e-01   p_joint 2.330894e-03

Joint ci ratio: 7.433064e-02	ci left: 2.154702e-03	ci right 2.321830e-03	k: 2774	n:1240000
Cons ci ratio: 3.395178e-03	ci left: 5.172015e-01	ci right 5.189613e-01	k: 642421	n:1240000
KS ci ratio: 1.065912e-01	ci left: 1.031431e-03	ci right 1.148339e-03	k: 1350	n:1240000
ILDR2   1240000 perm   760 sec   (1631 perm/sec)   p_kst 1.088710e-03   p_cons 5.180815e-01   p_joint 2.237097e-03

Joint ci ratio: 7.415743e-02	ci left: 2.147671e-03	ci right 2.313849e-03	k: 2787	n:1250000
Cons ci ratio: 3.381954e-03	ci left: 5.171484e-01	ci right 5.189011e-01	k: 647531	n:1250000
KS ci ratio: 1.059266e-01	ci left: 1.036418e-03	ci right 1.153113e-03	k: 1367	n:1250000
ILDR2   1250000 perm   771 sec   (1622 perm/sec)   p_kst 1.093600e-03   p_cons 5.180248e-01   p_joint 2.229600e-03

Joint ci ratio: 7.384024e-02	ci left: 2.149321e-03	ci right 2.314885e-03	k: 2811	n:1260000
Cons ci ratio: 3.368213e-03	ci left: 5.171953e-01	ci right 5.189411e-01	k: 652766	n:1260000
KS ci ratio: 1.054650e-01	ci left: 1.037465e-03	ci right 1.153737e-03	k: 1379	n:1260000
ILDR2   1260000 perm   781 sec   (1613 perm/sec)   p_kst 1.094444e-03   p_cons 5.180683e-01   p_joint 2.230952e-03

Joint ci ratio: 7.363124e-02	ci left: 2.144764e-03	ci right 2.309488e-03	k: 2827	n:1270000
Cons ci ratio: 3.354999e-03	ci left: 5.171880e-01	ci right 5.189269e-01	k: 657933	n:1270000
KS ci ratio: 1.051987e-01	ci left: 1.034662e-03	ci right 1.150310e-03	k: 1386	n:1270000
ILDR2   1270000 perm   792 sec   (1604 perm/sec)   p_kst 1.091339e-03   p_cons 5.180575e-01   p_joint 2.225984e-03

Joint ci ratio: 7.334651e-02	ci left: 2.144879e-03	ci right 2.308949e-03	k: 2849	n:1280000
Cons ci ratio: 3.342106e-03	ci left: 5.171558e-01	ci right 5.188879e-01	k: 663068	n:1280000
KS ci ratio: 1.047465e-01	ci left: 1.035708e-03	ci right 1.150944e-03	k: 1398	n:1280000
ILDR2   1280000 perm   802 sec   (1595 perm/sec)   p_kst 1.092188e-03   p_cons 5.180219e-01   p_joint 2.225781e-03

Joint ci ratio: 7.140234e-02	ci left: 2.247760e-03	ci right 2.414952e-03	k: 3006	n:1290000
Cons ci ratio: 3.396319e-03	ci left: 5.071749e-01	ci right 5.089011e-01	k: 655369	n:1290000
KS ci ratio: 1.044856e-01	ci left: 1.032963e-03	ci right 1.147590e-03	k: 1405	n:1290000
ILDR2   1290000 perm   813 sec   (1587 perm/sec)   p_kst 1.089147e-03   p_cons 5.080380e-01   p_joint 2.330233e-03

Joint ci ratio: 7.110731e-02	ci left: 2.249357e-03	ci right 2.415949e-03	k: 3031	n:1300000
Cons ci ratio: 3.383160e-03	ci left: 5.071887e-01	ci right 5.089082e-01	k: 660463	n:1300000
KS ci ratio: 1.039325e-01	ci left: 1.036255e-03	ci right 1.150602e-03	k: 1420	n:1300000
ILDR2   1300000 perm   824 sec   (1578 perm/sec)   p_kst 1.092308e-03   p_cons 5.080485e-01   p_joint 2.331538e-03

Joint ci ratio: 7.075794e-02	ci left: 2.254682e-03	ci right 2.420813e-03	k: 3061	n:1310000
Cons ci ratio: 3.370600e-03	ci left: 5.071359e-01	ci right 5.088488e-01	k: 665470	n:1310000
KS ci ratio: 1.032801e-01	ci left: 1.041729e-03	ci right 1.155915e-03	k: 1438	n:1310000
ILDR2   1310000 perm   835 sec   (1570 perm/sec)   p_kst 1.097710e-03   p_cons 5.079924e-01   p_joint 2.336641e-03

Joint ci ratio: 7.050514e-02	ci left: 2.253973e-03	ci right 2.419435e-03	k: 3083	n:1320000
Cons ci ratio: 3.357900e-03	ci left: 5.071255e-01	ci right 5.088320e-01	k: 670532	n:1320000
KS ci ratio: 1.028167e-01	ci left: 1.043432e-03	ci right 1.157260e-03	k: 1451	n:1320000
ILDR2   1320000 perm   845 sec   (1561 perm/sec)   p_kst 1.099242e-03   p_cons 5.079788e-01   p_joint 2.335606e-03

Joint ci ratio: 7.023238e-02	ci left: 2.254753e-03	ci right 2.419606e-03	k: 3107	n:1330000
Cons ci ratio: 3.344773e-03	ci left: 5.072003e-01	ci right 5.089004e-01	k: 675707	n:1330000
KS ci ratio: 1.022895e-01	ci left: 1.046576e-03	ci right 1.160126e-03	k: 1466	n:1330000
ILDR2   1330000 perm   856 sec   (1553 perm/sec)   p_kst 1.102256e-03   p_cons 5.080504e-01   p_joint 2.336090e-03

Joint ci ratio: 6.997395e-02	ci left: 2.254790e-03	ci right 2.419014e-03	k: 3130	n:1340000
Cons ci ratio: 3.332133e-03	ci left: 5.072240e-01	ci right 5.089177e-01	k: 680815	n:1340000
KS ci ratio: 1.019082e-01	ci left: 1.046765e-03	ci right 1.159887e-03	k: 1477	n:1340000
ILDR2   1340000 perm   867 sec   (1545 perm/sec)   p_kst 1.102239e-03   p_cons 5.080709e-01   p_joint 2.335821e-03

Joint ci ratio: 7.039268e-02	ci left: 2.211160e-03	ci right 2.373209e-03	k: 3093	n:1350000
Cons ci ratio: 3.320067e-03	ci left: 5.071822e-01	ci right 5.088696e-01	k: 685835	n:1350000
KS ci ratio: 1.016679e-01	ci left: 1.044064e-03	ci right 1.156612e-03	k: 1484	n:1350000
ILDR2   1350000 perm   879 sec   (1537 perm/sec)   p_kst 1.099259e-03   p_cons 5.080259e-01   p_joint 2.291111e-03

Joint ci ratio: 7.141853e-02	ci left: 2.131339e-03	ci right 2.289910e-03	k: 3005	n:1360000
Cons ci ratio: 3.307952e-03	ci left: 5.071682e-01	ci right 5.088494e-01	k: 690892	n:1360000
KS ci ratio: 1.013952e-01	ci left: 1.042120e-03	ci right 1.154139e-03	k: 1492	n:1360000
ILDR2   1360000 perm   890 sec   (1528 perm/sec)   p_kst 1.097059e-03   p_cons 5.080088e-01   p_joint 2.209559e-03

Joint ci ratio: 7.130035e-02	ci left: 2.122951e-03	ci right 2.280625e-03	k: 3015	n:1370000
Cons ci ratio: 3.295901e-03	ci left: 5.071647e-01	ci right 5.088397e-01	k: 695963	n:1370000
KS ci ratio: 1.008895e-01	ci left: 1.045186e-03	ci right 1.156941e-03	k: 1507	n:1370000
ILDR2   1370000 perm   901 sec   (1520 perm/sec)   p_kst 1.100000e-03   p_cons 5.080022e-01   p_joint 2.200730e-03

Joint ci ratio: 7.136023e-02	ci left: 2.104008e-03	ci right 2.260412e-03	k: 3010	n:1380000
Cons ci ratio: 3.284237e-03	ci left: 5.071220e-01	ci right 5.087910e-01	k: 700980	n:1380000
KS ci ratio: 1.005567e-01	ci left: 1.044676e-03	ci right 1.155986e-03	k: 1517	n:1380000
ILDR2   1380000 perm   913 sec   (1512 perm/sec)   p_kst 1.099275e-03   p_cons 5.079565e-01   p_joint 2.181159e-03

Joint ci ratio: 7.111269e-02	ci left: 2.103710e-03	ci right 2.259527e-03	k: 3031	n:1390000
Cons ci ratio: 3.272207e-03	ci left: 5.071549e-01	ci right 5.088178e-01	k: 706101	n:1390000
KS ci ratio: 1.000961e-01	ci left: 1.046979e-03	ci right 1.157994e-03	k: 1531	n:1390000
ILDR2   1390000 perm   924 sec   (1504 perm/sec)   p_kst 1.101439e-03   p_cons 5.079863e-01   p_joint 2.180576e-03

Joint ci ratio: 7.090264e-02	ci left: 2.101312e-03	ci right 2.256473e-03	k: 3049	n:1400000
Cons ci ratio: 3.260699e-03	ci left: 5.071272e-01	ci right 5.087842e-01	k: 711138	n:1400000
KS ci ratio: 9.983586e-02	ci left: 1.045072e-03	ci right 1.155580e-03	k: 1539	n:1400000
ILDR2   1400000 perm   935 sec   (1497 perm/sec)   p_kst 1.099286e-03   p_cons 5.079557e-01   p_joint 2.177857e-03

Outputting figure to mutsig2_images.part000000000085/ILDR2.6_1960_1400000_0.0010993_0.50796_0.0021779.png
                gene_name: ILDR2
               theta_stop: 0.100 
                    nperm: 1400000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0010 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0023 

Current progress: 23 percent done.
IMPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
Cons ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
KS ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
IMPG1   10000 perm   2 sec   (5806 perm/sec)   p_kst 1.674000e-01   p_cons 2.397000e-01   p_joint 1.358000e-01

Outputting figure to mutsig2_images.part000000000085/IMPG1.6_2462_10000_0.1674_0.2397_0.1358.png
                gene_name: IMPG1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
INTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
Cons ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
KS ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
INTS1   10000 perm   2 sec   (4934 perm/sec)   p_kst 3.332000e-01   p_cons 2.831000e-01   p_joint 4.154000e-01

Outputting figure to mutsig2_images.part000000000085/INTS1.6_6761_10000_0.3332_0.2831_0.4154.png
                gene_name: INTS1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 27 percent done.
IL4R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
IL4R   10000 perm   2 sec   (5921 perm/sec)   p_kst 7.418000e-01   p_cons 5.160000e-01   p_joint 8.755000e-01

Outputting figure to mutsig2_images.part000000000085/IL4R.5_2532_10000_0.7418_0.516_0.8755.png
                gene_name: IL4R
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 29 percent done.
IL5RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
Cons ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
KS ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
IL5RA   10000 perm   1 sec   (6766 perm/sec)   p_kst 1.333000e-01   p_cons 5.299000e-01   p_joint 2.883000e-01

Outputting figure to mutsig2_images.part000000000085/IL5RA.5_1329_10000_0.1333_0.5299_0.2883.png
                gene_name: IL5RA
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 31 percent done.
IL9R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
Cons ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
IL9R   10000 perm   2 sec   (6605 perm/sec)   p_kst 2.682000e-01   p_cons 8.289000e-01   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000085/IL9R.5_1602_10000_0.2682_0.8289_0.488.png
                gene_name: IL9R
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
INMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
Cons ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
KS ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
INMT   10000 perm   1 sec   (7591 perm/sec)   p_kst 4.550000e-02   p_cons 8.950000e-02   p_joint 9.710000e-02

Joint ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
Cons ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
KS ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
INMT   20000 perm   3 sec   (6696 perm/sec)   p_kst 4.305000e-02   p_cons 8.885000e-02   p_joint 3.765000e-02

Joint ci ratio: 1.148169e-01	ci left: 3.524875e-02	ci right 3.957476e-02	k: 1121	n:30000
Cons ci ratio: 7.224430e-02	ci left: 8.612899e-02	ci right 9.261746e-02	k: 2680	n:30000
KS ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
INMT   30000 perm   5 sec   (6369 perm/sec)   p_kst 4.303333e-02   p_cons 8.933333e-02   p_joint 3.736667e-02

Joint ci ratio: 8.862855e-02	ci left: 4.455487e-02	ci right 4.871127e-02	k: 1864	n:40000
Cons ci ratio: 6.279415e-02	ci left: 8.598053e-02	ci right 9.157934e-02	k: 3550	n:40000
KS ci ratio: 9.349108e-02	ci left: 4.012839e-02	ci right 4.408843e-02	k: 1683	n:40000
INMT   40000 perm   7 sec   (6153 perm/sec)   p_kst 4.207500e-02   p_cons 8.875000e-02   p_joint 4.660000e-02

Outputting figure to mutsig2_images.part000000000085/INMT.5_804_40000_0.042075_0.08875_0.0466.png
                gene_name: INMT
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 35 percent done.
INPP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
Cons ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
KS ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
INPP4A   10000 perm   2 sec   (5705 perm/sec)   p_kst 2.543000e-01   p_cons 7.408000e-01   p_joint 4.846000e-01

Outputting figure to mutsig2_images.part000000000085/INPP4A.5_3215_10000_0.2543_0.7408_0.4846.png
                gene_name: INPP4A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 37 percent done.
INSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.106126e-02	ci left: 2.249406e-01	ci right 2.416151e-01	k: 2332	n:10000
Cons ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
KS ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
INSC   10000 perm   2 sec   (6614 perm/sec)   p_kst 1.426000e-01   p_cons 1.459000e-01   p_joint 2.332000e-01

Outputting figure to mutsig2_images.part000000000085/INSC.5_1792_10000_0.1426_0.1459_0.2332.png
                gene_name: INSC
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 38 percent done.
ILF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
Cons ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KS ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
ILF3   10000 perm   2 sec   (6024 perm/sec)   p_kst 2.652000e-01   p_cons 3.240000e-02   p_joint 3.170000e-02

Joint ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
Cons ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
KS ci ratio: 4.603834e-02	ci left: 2.598855e-01	ci right 2.721825e-01	k: 5320	n:20000
ILF3   20000 perm   4 sec   (5450 perm/sec)   p_kst 2.660000e-01   p_cons 2.820000e-02   p_joint 8.990000e-02

Joint ci ratio: 8.698645e-02	ci left: 6.063560e-02	ci right 6.618266e-02	k: 1901	n:30000
Cons ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
KS ci ratio: 3.739392e-02	ci left: 2.630603e-01	ci right 2.731180e-01	k: 8042	n:30000
ILF3   30000 perm   6 sec   (5218 perm/sec)   p_kst 2.680667e-01   p_cons 2.803333e-02   p_joint 6.336667e-02

Joint ci ratio: 7.500174e-02	ci left: 6.152243e-02	ci right 6.634111e-02	k: 2556	n:40000
Cons ci ratio: 1.170479e-01	ci left: 2.567637e-02	ci right 2.889275e-02	k: 1090	n:40000
KS ci ratio: 3.237175e-02	ci left: 2.638878e-01	ci right 2.725959e-01	k: 10729	n:40000
ILF3   40000 perm   8 sec   (5074 perm/sec)   p_kst 2.682250e-01   p_cons 2.725000e-02   p_joint 6.390000e-02

Joint ci ratio: 6.372236e-02	ci left: 6.811355e-02	ci right 7.261648e-02	k: 3517	n:50000
Cons ci ratio: 1.044061e-01	ci left: 2.598660e-02	ci right 2.886862e-02	k: 1370	n:50000
KS ci ratio: 2.890780e-02	ci left: 2.649773e-01	ci right 2.727696e-01	k: 13443	n:50000
ILF3   50000 perm   10 sec   (4978 perm/sec)   p_kst 2.688600e-01   p_cons 2.740000e-02   p_joint 7.034000e-02

Joint ci ratio: 5.840585e-02	ci left: 6.779009e-02	ci right 7.188497e-02	k: 4189	n:60000
Cons ci ratio: 9.481287e-02	ci left: 2.638512e-02	ci right 2.902749e-02	k: 1661	n:60000
KS ci ratio: 2.642584e-02	ci left: 2.647743e-01	ci right 2.718815e-01	k: 16099	n:60000
ILF3   60000 perm   12 sec   (4890 perm/sec)   p_kst 2.683167e-01   p_cons 2.768333e-02   p_joint 6.981667e-02

Outputting figure to mutsig2_images.part000000000085/ILF3.4_2845_60000_0.26832_0.027683_0.069817.png
                gene_name: ILF3
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 40 percent done.
IMMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
IMMT   10000 perm   2 sec   (6632 perm/sec)   p_kst 2.286000e-01   p_cons 2.610000e-02   p_joint 4.340000e-02

Joint ci ratio: 1.034758e-01	ci left: 6.347548e-02	ci right 7.045106e-02	k: 1338	n:20000
Cons ci ratio: 1.691496e-01	ci left: 2.393452e-02	ci right 2.840468e-02	k: 522	n:20000
KS ci ratio: 5.085997e-02	ci left: 2.231418e-01	ci right 2.348371e-01	k: 4579	n:20000
IMMT   20000 perm   3 sec   (5969 perm/sec)   p_kst 2.289500e-01   p_cons 2.610000e-02   p_joint 6.690000e-02

Joint ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
Cons ci ratio: 1.387023e-01	ci left: 2.413198e-02	ci right 2.776061e-02	k: 777	n:30000
KS ci ratio: 4.127782e-02	ci left: 2.263395e-01	ci right 2.359126e-01	k: 6933	n:30000
IMMT   30000 perm   5 sec   (5686 perm/sec)   p_kst 2.311000e-01   p_cons 2.590000e-02   p_joint 3.380000e-02

Joint ci ratio: 6.851179e-02	ci left: 7.305233e-02	ci right 7.825948e-02	k: 3025	n:40000
Cons ci ratio: 1.218393e-01	ci left: 2.368610e-02	ci right 2.678335e-02	k: 1008	n:40000
KS ci ratio: 3.580900e-02	ci left: 2.263800e-01	ci right 2.346592e-01	k: 9220	n:40000
IMMT   40000 perm   7 sec   (5516 perm/sec)   p_kst 2.305000e-01   p_cons 2.520000e-02   p_joint 7.562500e-02

Joint ci ratio: 7.476041e-02	ci left: 5.016816e-02	ci right 5.408404e-02	k: 2605	n:50000
Cons ci ratio: 1.085032e-01	ci left: 2.405798e-02	ci right 2.683748e-02	k: 1271	n:50000
KS ci ratio: 3.219787e-02	ci left: 2.249648e-01	ci right 2.323467e-01	k: 11432	n:50000
IMMT   50000 perm   9 sec   (5369 perm/sec)   p_kst 2.286400e-01   p_cons 2.542000e-02   p_joint 5.210000e-02

Joint ci ratio: 5.113192e-02	ci left: 8.693088e-02	ci right 9.150894e-02	k: 5352	n:60000
Cons ci ratio: 9.833797e-02	ci left: 2.452983e-02	ci right 2.708298e-02	k: 1547	n:60000
KS ci ratio: 2.941976e-02	ci left: 2.249629e-01	ci right 2.316967e-01	k: 13699	n:60000
IMMT   60000 perm   11 sec   (5225 perm/sec)   p_kst 2.283167e-01   p_cons 2.578333e-02   p_joint 8.920000e-02

Outputting figure to mutsig2_images.part000000000085/IMMT.4_2337_60000_0.22832_0.025783_0.0892.png
                gene_name: IMMT
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 42 percent done.
IMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
Cons ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
KS ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
IMP5   10000 perm   1 sec   (6911 perm/sec)   p_kst 3.737000e-01   p_cons 2.589000e-01   p_joint 3.515000e-01

Outputting figure to mutsig2_images.part000000000085/IMP5.4_2059_10000_0.3737_0.2589_0.3515.png
                gene_name: IMP5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 44 percent done.
IMPDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
KS ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
IMPDH1   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.792000e-01   p_cons 9.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPDH1.4_1882_10000_0.5792_0.9302_1.png
                gene_name: IMPDH1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
INO80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
Cons ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
KS ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
INO80   10000 perm   2 sec   (5508 perm/sec)   p_kst 2.050000e-02   p_cons 7.920000e-02   p_joint 2.880000e-02

Joint ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
Cons ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
KS ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
INO80   20000 perm   4 sec   (5001 perm/sec)   p_kst 2.230000e-02   p_cons 7.895000e-02   p_joint 2.580000e-02

Joint ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
Cons ci ratio: 7.743416e-02	ci left: 7.564447e-02	ci right 8.177074e-02	k: 2360	n:30000
KS ci ratio: 1.506624e-01	ci left: 2.040200e-02	ci right 2.375811e-02	k: 661	n:30000
INO80   30000 perm   6 sec   (4783 perm/sec)   p_kst 2.203333e-02   p_cons 7.866667e-02   p_joint 2.373333e-02

Joint ci ratio: 1.376379e-01	ci left: 1.850552e-02	ci right 2.126481e-02	k: 794	n:40000
Cons ci ratio: 6.685295e-02	ci left: 7.649782e-02	ci right 8.181347e-02	k: 3165	n:40000
KS ci ratio: 1.322245e-01	ci left: 2.007672e-02	ci right 2.294333e-02	k: 859	n:40000
INO80   40000 perm   9 sec   (4655 perm/sec)   p_kst 2.147500e-02   p_cons 7.912500e-02   p_joint 1.985000e-02

Joint ci ratio: 1.113663e-01	ci left: 2.283182e-02	ci right 2.554381e-02	k: 1208	n:50000
Cons ci ratio: 5.965211e-02	ci left: 7.712359e-02	ci right 8.188537e-02	k: 3974	n:50000
KS ci ratio: 1.179854e-01	ci left: 2.032418e-02	ci right 2.289178e-02	k: 1079	n:50000
INO80   50000 perm   11 sec   (4559 perm/sec)   p_kst 2.158000e-02   p_cons 7.948000e-02   p_joint 2.416000e-02

Joint ci ratio: 1.013700e-01	ci left: 2.308265e-02	ci right 2.556365e-02	k: 1458	n:60000
Cons ci ratio: 5.430647e-02	ci left: 7.772604e-02	ci right 8.208136e-02	k: 4793	n:60000
KS ci ratio: 1.079613e-01	ci left: 2.033806e-02	ci right 2.267521e-02	k: 1289	n:60000
INO80   60000 perm   13 sec   (4458 perm/sec)   p_kst 2.148333e-02   p_cons 7.988333e-02   p_joint 2.430000e-02

Joint ci ratio: 8.083845e-02	ci left: 3.118465e-02	ci right 3.382572e-02	k: 2274	n:70000
Cons ci ratio: 5.031230e-02	ci left: 7.778875e-02	ci right 8.181759e-02	k: 5585	n:70000
KS ci ratio: 1.004657e-01	ci left: 2.021529e-02	ci right 2.236751e-02	k: 1489	n:70000
INO80   70000 perm   16 sec   (4363 perm/sec)   p_kst 2.127143e-02   p_cons 7.978571e-02   p_joint 3.248571e-02

Joint ci ratio: 6.546190e-02	ci left: 4.149390e-02	ci right 4.431437e-02	k: 3431	n:80000
Cons ci ratio: 4.697099e-02	ci left: 7.820327e-02	ci right 8.197725e-02	k: 6406	n:80000
KS ci ratio: 9.451325e-02	ci left: 2.005420e-02	ci right 2.205575e-02	k: 1683	n:80000
INO80   80000 perm   19 sec   (4291 perm/sec)   p_kst 2.103750e-02   p_cons 8.007500e-02   p_joint 4.288750e-02

Outputting figure to mutsig2_images.part000000000085/INO80.4_4811_80000_0.021038_0.080075_0.042888.png
                gene_name: INO80
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 48 percent done.
INPP5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
INPP5D   10000 perm   2 sec   (6332 perm/sec)   p_kst 7.021000e-01   p_cons 2.147000e-01   p_joint 5.598000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5D.4_3186_10000_0.7021_0.2147_0.5598.png
                gene_name: INPP5D
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 50 percent done.
INTS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.106725e-02	ci left: 7.675975e-01	ci right 7.840416e-01	k: 7759	n:10000
KS ci ratio: 1.464933e-02	ci left: 8.709139e-01	ci right 8.838654e-01	k: 8775	n:10000
INTS12   10000 perm   1 sec   (6728 perm/sec)   p_kst 8.775000e-01   p_cons 7.759000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INTS12.4_1413_10000_0.8775_0.7759_1.png
                gene_name: INTS12
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
INTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
KS ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
INTS3   10000 perm   2 sec   (5968 perm/sec)   p_kst 6.641000e-01   p_cons 3.448000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INTS3.4_3249_10000_0.6641_0.3448_1.png
                gene_name: INTS3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
IL4I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
KS ci ratio: 4.635899e-03	ci left: 9.838246e-01	ci right 9.884858e-01	k: 9863	n:10000
IL4I1   10000 perm   1 sec   (7551 perm/sec)   p_kst 9.863000e-01   p_cons 6.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL4I1.3_1815_10000_0.9863_0.6543_1.png
                gene_name: IL4I1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
INCENP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
Cons ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
KS ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
INCENP   10000 perm   2 sec   (6359 perm/sec)   p_kst 6.710000e-01   p_cons 2.709000e-01   p_joint 5.233000e-01

Outputting figure to mutsig2_images.part000000000085/INCENP.3_2829_10000_0.671_0.2709_0.5233.png
                gene_name: INCENP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 58 percent done.
INHBE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
Cons ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
KS ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
INHBE   10000 perm   1 sec   (7196 perm/sec)   p_kst 4.560000e-01   p_cons 3.276000e-01   p_joint 4.464000e-01

Outputting figure to mutsig2_images.part000000000085/INHBE.3_1061_10000_0.456_0.3276_0.4464.png
                gene_name: INHBE
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 60 percent done.
INO80C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
Cons ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
KS ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
INO80C   10000 perm   1 sec   (7633 perm/sec)   p_kst 4.414000e-01   p_cons 2.248000e-01   p_joint 4.128000e-01

Outputting figure to mutsig2_images.part000000000085/INO80C.3_715_10000_0.4414_0.2248_0.4128.png
                gene_name: INO80C
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
INO80D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
INO80D   10000 perm   2 sec   (6462 perm/sec)   p_kst 6.743000e-01   p_cons 7.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INO80D.3_3120_10000_0.6743_0.746_1.png
                gene_name: INO80D
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
INPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
KS ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
INPP1   10000 perm   1 sec   (7230 perm/sec)   p_kst 7.990000e-01   p_cons 2.096000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000085/INPP1.3_1220_10000_0.799_0.2096_0.5394.png
                gene_name: INPP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 65 percent done.
INPP5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
INPP5A   10000 perm   1 sec   (7399 perm/sec)   p_kst 5.575000e-01   p_cons 1.723000e-01   p_joint 5.149000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5A.3_1299_10000_0.5575_0.1723_0.5149.png
                gene_name: INPP5A
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 67 percent done.
INPP5F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
KS ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
INPP5F   10000 perm   2 sec   (6198 perm/sec)   p_kst 5.584000e-01   p_cons 7.963000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INPP5F.3_3479_10000_0.5584_0.7963_1.png
                gene_name: INPP5F
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
INS-IGF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
INS-IGF2   10000 perm   1 sec   (7806 perm/sec)   p_kst 1.393000e-01   p_cons 2.170000e-02   p_joint 7.020000e-02

Joint ci ratio: 1.651402e-01	ci left: 2.513349e-02	ci right 2.970529e-02	k: 547	n:20000
Cons ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
KS ci ratio: 6.931891e-02	ci left: 1.330508e-01	ci right 1.426547e-01	k: 2756	n:20000
INS-IGF2   20000 perm   3 sec   (6886 perm/sec)   p_kst 1.378000e-01   p_cons 2.205000e-02   p_joint 2.735000e-02

Joint ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
Cons ci ratio: 1.396263e-01	ci left: 2.380998e-02	ci right 2.741602e-02	k: 767	n:30000
KS ci ratio: 5.669840e-02	ci left: 1.335229e-01	ci right 1.413475e-01	k: 4122	n:30000
INS-IGF2   30000 perm   5 sec   (6521 perm/sec)   p_kst 1.374000e-01   p_cons 2.556667e-02   p_joint 2.040000e-02

Joint ci ratio: 1.191993e-01	ci left: 2.475374e-02	ci right 2.791554e-02	k: 1052	n:40000
Cons ci ratio: 1.204984e-01	ci left: 2.421982e-02	ci right 2.734954e-02	k: 1030	n:40000
KS ci ratio: 4.903692e-02	ci left: 1.343618e-01	ci right 1.411409e-01	k: 5509	n:40000
INS-IGF2   40000 perm   6 sec   (6293 perm/sec)   p_kst 1.377250e-01   p_cons 2.575000e-02   p_joint 2.630000e-02

Joint ci ratio: 1.292649e-01	ci left: 1.689143e-02	ci right 1.924500e-02	k: 902	n:50000
Cons ci ratio: 1.155484e-01	ci left: 2.119844e-02	ci right 2.381741e-02	k: 1124	n:50000
KS ci ratio: 4.357975e-02	ci left: 1.362363e-01	ci right 1.423256e-01	k: 6963	n:50000
INS-IGF2   50000 perm   8 sec   (6111 perm/sec)   p_kst 1.392600e-01   p_cons 2.248000e-02   p_joint 1.804000e-02

Joint ci ratio: 1.306431e-01	ci left: 1.381673e-02	ci right 1.576395e-02	k: 886	n:60000
Cons ci ratio: 1.049257e-01	ci left: 2.153924e-02	ci right 2.394056e-02	k: 1363	n:60000
KS ci ratio: 3.979324e-02	ci left: 1.364394e-01	ci right 1.419955e-01	k: 8352	n:60000
INS-IGF2   60000 perm   10 sec   (5953 perm/sec)   p_kst 1.392000e-01   p_cons 2.271667e-02   p_joint 1.476667e-02

Joint ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
Cons ci ratio: 9.803927e-02	ci left: 2.123279e-02	ci right 2.343562e-02	k: 1562	n:70000
KS ci ratio: 3.678917e-02	ci left: 1.369837e-01	ci right 1.421319e-01	k: 9768	n:70000
INS-IGF2   70000 perm   12 sec   (5812 perm/sec)   p_kst 1.395429e-01   p_cons 2.231429e-02   p_joint 1.482857e-02

Joint ci ratio: 1.073728e-01	ci left: 1.550688e-02	ci right 1.727845e-02	k: 1310	n:80000
Cons ci ratio: 9.124572e-02	ci left: 2.152009e-02	ci right 2.358974e-02	k: 1803	n:80000
KS ci ratio: 3.443567e-02	ci left: 1.369943e-01	ci right 1.418069e-01	k: 11151	n:80000
INS-IGF2   80000 perm   14 sec   (5675 perm/sec)   p_kst 1.393875e-01   p_cons 2.253750e-02   p_joint 1.637500e-02

Joint ci ratio: 1.027977e-01	ci left: 1.508201e-02	ci right 1.672718e-02	k: 1430	n:90000
Cons ci ratio: 8.629963e-02	ci left: 2.144307e-02	ci right 2.338788e-02	k: 2016	n:90000
KS ci ratio: 3.252957e-02	ci left: 1.366687e-01	ci right 1.411990e-01	k: 12503	n:90000
INS-IGF2   90000 perm   16 sec   (5550 perm/sec)   p_kst 1.389222e-01   p_cons 2.240000e-02   p_joint 1.588889e-02

Joint ci ratio: 9.951274e-02	ci left: 1.451906e-02	ci right 1.604924e-02	k: 1527	n:100000
Cons ci ratio: 8.228726e-02	ci left: 2.127611e-02	ci right 2.311174e-02	k: 2218	n:100000
KS ci ratio: 3.089558e-02	ci left: 1.365136e-01	ci right 1.408074e-01	k: 13865	n:100000
INS-IGF2   100000 perm   18 sec   (5432 perm/sec)   p_kst 1.386500e-01   p_cons 2.218000e-02   p_joint 1.527000e-02

Outputting figure to mutsig2_images.part000000000085/INS-IGF2.3_615_100000_0.13865_0.02218_0.01527.png
                gene_name: INS-IGF2
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 71 percent done.
INSIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
KS ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
INSIG2   10000 perm   1 sec   (7537 perm/sec)   p_kst 7.221000e-01   p_cons 9.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INSIG2.3_698_10000_0.7221_0.9514_1.png
                gene_name: INSIG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
INSL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
KS ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
INSL5   10000 perm   1 sec   (8046 perm/sec)   p_kst 9.131000e-01   p_cons 6.272000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INSL5.3_416_10000_0.9131_0.6272_1.png
                gene_name: INSL5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
INTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
Cons ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
KS ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
INTS2   10000 perm   2 sec   (6039 perm/sec)   p_kst 5.009000e-01   p_cons 3.125000e-01   p_joint 7.653000e-01

Outputting figure to mutsig2_images.part000000000085/INTS2.3_3715_10000_0.5009_0.3125_0.7653.png
                gene_name: INTS2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 77 percent done.
INTS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
KS ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
INTS8   10000 perm   2 sec   (6249 perm/sec)   p_kst 1.916000e-01   p_cons 6.179000e-01   p_joint 2.585000e-01

Outputting figure to mutsig2_images.part000000000085/INTS8.3_3096_10000_0.1916_0.6179_0.2585.png
                gene_name: INTS8
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 79 percent done.
ILKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 9.842379e-02	ci left: 1.301213e-01	ci right 1.436909e-01	k: 1368	n:10000
ILKAP   10000 perm   1 sec   (7305 perm/sec)   p_kst 1.368000e-01   p_cons 4.330000e-02   p_joint 6.119000e-01

Joint ci ratio: 1.412106e-02	ci left: 7.882769e-01	ci right 7.995375e-01	k: 15879	n:20000
Cons ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
KS ci ratio: 6.939191e-02	ci left: 1.328045e-01	ci right 1.424011e-01	k: 2751	n:20000
ILKAP   20000 perm   3 sec   (6502 perm/sec)   p_kst 1.375500e-01   p_cons 4.550000e-02   p_joint 7.939500e-01

Joint ci ratio: 1.718782e-02	ci left: 6.287202e-01	ci right 6.396538e-01	k: 19026	n:30000
Cons ci ratio: 1.029485e-01	ci left: 4.372192e-02	ci right 4.849981e-02	k: 1382	n:30000
KS ci ratio: 5.695490e-02	ci left: 1.324691e-01	ci right 1.402682e-01	k: 4090	n:30000
ILKAP   30000 perm   5 sec   (6229 perm/sec)   p_kst 1.363333e-01   p_cons 4.606667e-02   p_joint 6.342000e-01

Joint ci ratio: 1.487959e-02	ci left: 6.296332e-01	ci right 6.390972e-01	k: 25375	n:40000
Cons ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
KS ci ratio: 4.914559e-02	ci left: 1.338422e-01	ci right 1.406105e-01	k: 5488	n:40000
ILKAP   40000 perm   7 sec   (6015 perm/sec)   p_kst 1.372000e-01   p_cons 4.637500e-02   p_joint 6.343750e-01

Outputting figure to mutsig2_images.part000000000085/ILKAP.2_1227_40000_0.1372_0.046375_0.63438.png
                gene_name: ILKAP
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 81 percent done.
ING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
Cons ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
KS ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
ING1   10000 perm   1 sec   (7126 perm/sec)   p_kst 6.526000e-01   p_cons 6.798000e-01   p_joint 7.512000e-01

Outputting figure to mutsig2_images.part000000000085/ING1.2_1425_10000_0.6526_0.6798_0.7512.png
                gene_name: ING1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 83 percent done.
ING3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
Cons ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
KS ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
ING3   10000 perm   1 sec   (7575 perm/sec)   p_kst 1.300000e-01   p_cons 7.370000e-01   p_joint 5.204000e-01

Joint ci ratio: 4.602656e-02	ci left: 2.599848e-01	ci right 2.722833e-01	k: 5322	n:20000
Cons ci ratio: 1.641928e-02	ci left: 7.341132e-01	ci right 7.463169e-01	k: 14805	n:20000
KS ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
ING3   20000 perm   3 sec   (6706 perm/sec)   p_kst 1.325500e-01   p_cons 7.402500e-01   p_joint 2.661000e-01

Outputting figure to mutsig2_images.part000000000085/ING3.2_1321_20000_0.13255_0.74025_0.2661.png
                gene_name: ING3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 85 percent done.
ING4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.124885e-02	ci left: 7.645598e-01	ci right 7.810810e-01	k: 7729	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 2.797670e-02	ci left: 6.531359e-01	ci right 6.717694e-01	k: 6625	n:10000
ING4   10000 perm   1 sec   (7944 perm/sec)   p_kst 6.625000e-01   p_cons 4.722000e-01   p_joint 7.729000e-01

Outputting figure to mutsig2_images.part000000000085/ING4.2_782_10000_0.6625_0.4722_0.7729.png
                gene_name: ING4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 87 percent done.
INO80B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
INO80B   10000 perm   1 sec   (7722 perm/sec)   p_kst 2.480000e-01   p_cons 3.755000e-01   p_joint 4.248000e-01

Outputting figure to mutsig2_images.part000000000085/INO80B.2_1091_10000_0.248_0.3755_0.4248.png
                gene_name: INO80B
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 88 percent done.
INPP5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
Cons ci ratio: 1.135904e-02	ci left: 9.171884e-01	ci right 9.277639e-01	k: 9226	n:10000
KS ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
INPP5B   10000 perm   1 sec   (6803 perm/sec)   p_kst 5.552000e-01   p_cons 9.226000e-01   p_joint 8.346000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5B.2_2834_10000_0.5552_0.9226_0.8346.png
                gene_name: INPP5B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
INSIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
INSIG1   10000 perm   1 sec   (7764 perm/sec)   p_kst 3.210000e-02   p_cons 2.990000e-02   p_joint 4.500000e-03

Joint ci ratio: 4.033559e-01	ci left: 3.754742e-03	ci right 5.693581e-03	k: 93	n:20000
Cons ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
KS ci ratio: 1.592602e-01	ci left: 2.705441e-02	ci right 3.178372e-02	k: 587	n:20000
INSIG1   20000 perm   3 sec   (6789 perm/sec)   p_kst 2.935000e-02   p_cons 2.975000e-02   p_joint 4.650000e-03

Joint ci ratio: 3.498785e-01	ci left: 3.439032e-03	ci right 4.926184e-03	k: 124	n:30000
Cons ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
KS ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
INSIG1   30000 perm   5 sec   (6450 perm/sec)   p_kst 2.813333e-02   p_cons 2.920000e-02   p_joint 4.133333e-03

Joint ci ratio: 3.045377e-01	ci left: 3.497522e-03	ci right 4.776119e-03	k: 164	n:40000
Cons ci ratio: 1.125168e-01	ci left: 2.779061e-02	ci right 3.112816e-02	k: 1177	n:40000
KS ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
INSIG1   40000 perm   6 sec   (6226 perm/sec)   p_kst 2.792500e-02   p_cons 2.942500e-02   p_joint 4.100000e-03

Joint ci ratio: 2.667637e-01	ci left: 3.726732e-03	ci right 4.891974e-03	k: 214	n:50000
Cons ci ratio: 1.006207e-01	ci left: 2.797573e-02	ci right 3.095924e-02	k: 1472	n:50000
KS ci ratio: 1.029108e-01	ci left: 2.674691e-02	ci right 2.966821e-02	k: 1409	n:50000
INSIG1   50000 perm   8 sec   (6016 perm/sec)   p_kst 2.818000e-02   p_cons 2.944000e-02   p_joint 4.280000e-03

Joint ci ratio: 1.917570e-01	ci left: 6.253247e-03	ci right 7.595113e-03	k: 414	n:60000
Cons ci ratio: 9.219297e-02	ci left: 2.789987e-02	ci right 3.061258e-02	k: 1754	n:60000
KS ci ratio: 9.423134e-02	ci left: 2.671079e-02	ci right 2.936846e-02	k: 1681	n:60000
INSIG1   60000 perm   10 sec   (5860 perm/sec)   p_kst 2.801667e-02   p_cons 2.923333e-02   p_joint 6.900000e-03

Joint ci ratio: 1.794397e-01	ci left: 6.163629e-03	ci right 7.392077e-03	k: 473	n:70000
Cons ci ratio: 8.536494e-02	ci left: 2.799313e-02	ci right 3.050324e-02	k: 2046	n:70000
KS ci ratio: 8.787302e-02	ci left: 2.642683e-02	ci right 2.886968e-02	k: 1934	n:70000
INSIG1   70000 perm   12 sec   (5719 perm/sec)   p_kst 2.762857e-02   p_cons 2.922857e-02   p_joint 6.757143e-03

Joint ci ratio: 1.687490e-01	ci left: 6.134420e-03	ci right 7.276795e-03	k: 535	n:80000
Cons ci ratio: 7.973637e-02	ci left: 2.815447e-02	ci right 3.050483e-02	k: 2345	n:80000
KS ci ratio: 8.214865e-02	ci left: 2.653694e-02	ci right 2.882249e-02	k: 2213	n:80000
INSIG1   80000 perm   14 sec   (5593 perm/sec)   p_kst 2.766250e-02   p_cons 2.931250e-02   p_joint 6.687500e-03

Joint ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
Cons ci ratio: 7.532704e-02	ci left: 2.810966e-02	ci right 3.032082e-02	k: 2628	n:90000
KS ci ratio: 7.791424e-02	ci left: 2.628867e-02	ci right 2.843082e-02	k: 2461	n:90000
INSIG1   90000 perm   16 sec   (5476 perm/sec)   p_kst 2.734444e-02   p_cons 2.920000e-02   p_joint 4.022222e-03

Joint ci ratio: 1.513895e-01	ci left: 6.155607e-03	ci right 7.173324e-03	k: 665	n:100000
Cons ci ratio: 7.140002e-02	ci left: 2.821428e-02	ci right 3.031315e-02	k: 2925	n:100000
KS ci ratio: 7.367481e-02	ci left: 2.651478e-02	ci right 2.855275e-02	k: 2752	n:100000
INSIG1   100000 perm   19 sec   (5373 perm/sec)   p_kst 2.752000e-02   p_cons 2.925000e-02   p_joint 6.650000e-03

Joint ci ratio: 1.862913e-01	ci left: 3.635581e-03	ci right 4.390939e-03	k: 440	n:110000
Cons ci ratio: 6.813836e-02	ci left: 2.821292e-02	ci right 3.021201e-02	k: 3212	n:110000
KS ci ratio: 7.042937e-02	ci left: 2.642536e-02	ci right 2.836331e-02	k: 3012	n:110000
INSIG1   110000 perm   21 sec   (5276 perm/sec)   p_kst 2.738182e-02   p_cons 2.920000e-02   p_joint 4.000000e-03

Joint ci ratio: 1.390956e-01	ci left: 6.117475e-03	ci right 7.039947e-03	k: 788	n:120000
Cons ci ratio: 6.527679e-02	ci left: 2.822181e-02	ci right 3.013437e-02	k: 3500	n:120000
KS ci ratio: 6.724099e-02	ci left: 2.661478e-02	ci right 2.847481e-02	k: 3304	n:120000
INSIG1   120000 perm   23 sec   (5177 perm/sec)   p_kst 2.753333e-02   p_cons 2.916667e-02   p_joint 6.566667e-03

Joint ci ratio: 1.715586e-01	ci left: 3.656782e-03	ci right 4.350246e-03	k: 519	n:130000
Cons ci ratio: 6.257798e-02	ci left: 2.838234e-02	ci right 3.022336e-02	k: 3808	n:130000
KS ci ratio: 6.455134e-02	ci left: 2.669345e-02	ci right 2.848155e-02	k: 3585	n:130000
INSIG1   130000 perm   26 sec   (5085 perm/sec)   p_kst 2.757692e-02   p_cons 2.929231e-02   p_joint 3.992308e-03

Joint ci ratio: 1.642902e-01	ci left: 3.717202e-03	ci right 4.389309e-03	k: 566	n:140000
Cons ci ratio: 6.019592e-02	ci left: 2.851428e-02	ci right 3.029100e-02	k: 4115	n:140000
KS ci ratio: 6.211931e-02	ci left: 2.679732e-02	ci right 2.852232e-02	k: 3871	n:140000
INSIG1   140000 perm   28 sec   (4994 perm/sec)   p_kst 2.765000e-02   p_cons 2.939286e-02   p_joint 4.042857e-03

Joint ci ratio: 1.593130e-01	ci left: 3.699669e-03	ci right 4.346401e-03	k: 602	n:150000
Cons ci ratio: 5.839397e-02	ci left: 2.831431e-02	ci right 3.002396e-02	k: 4374	n:150000
KS ci ratio: 6.017406e-02	ci left: 2.668479e-02	ci right 2.834687e-02	k: 4126	n:150000
INSIG1   150000 perm   31 sec   (4904 perm/sec)   p_kst 2.750667e-02   p_cons 2.916000e-02   p_joint 4.013333e-03

Joint ci ratio: 1.542783e-01	ci left: 3.708634e-03	ci right 4.334549e-03	k: 642	n:160000
Cons ci ratio: 5.680778e-02	ci left: 2.807840e-02	ci right 2.972623e-02	k: 4623	n:160000
KS ci ratio: 5.829825e-02	ci left: 2.667949e-02	ci right 2.828769e-02	k: 4396	n:160000
INSIG1   160000 perm   33 sec   (4823 perm/sec)   p_kst 2.747500e-02   p_cons 2.889375e-02   p_joint 4.012500e-03

Joint ci ratio: 1.503571e-01	ci left: 3.682853e-03	ci right 4.287198e-03	k: 676	n:170000
Cons ci ratio: 5.522752e-02	ci left: 2.798688e-02	ci right 2.958219e-02	k: 4892	n:170000
KS ci ratio: 5.665629e-02	ci left: 2.661171e-02	ci right 2.816917e-02	k: 4655	n:170000
INSIG1   170000 perm   36 sec   (4741 perm/sec)   p_kst 2.738235e-02   p_cons 2.877647e-02   p_joint 3.976471e-03

Joint ci ratio: 1.454929e-01	ci left: 3.724354e-03	ci right 4.314019e-03	k: 722	n:180000
Cons ci ratio: 5.353242e-02	ci left: 2.815284e-02	ci right 2.970683e-02	k: 5206	n:180000
KS ci ratio: 5.516298e-02	ci left: 2.653559e-02	ci right 2.804635e-02	k: 4911	n:180000
INSIG1   180000 perm   39 sec   (4669 perm/sec)   p_kst 2.728333e-02   p_cons 2.892222e-02   p_joint 4.011111e-03

Joint ci ratio: 1.109564e-01	ci left: 6.164049e-03	ci right 6.893235e-03	k: 1239	n:190000
Cons ci ratio: 5.203779e-02	ci left: 2.824483e-02	ci right 2.975906e-02	k: 5509	n:190000
KS ci ratio: 5.380323e-02	ci left: 2.644720e-02	ci right 2.791465e-02	k: 5163	n:190000
INSIG1   190000 perm   41 sec   (4592 perm/sec)   p_kst 2.717368e-02   p_cons 2.899474e-02   p_joint 6.521053e-03

Joint ci ratio: 1.077019e-01	ci left: 6.225467e-03	ci right 6.938948e-03	k: 1315	n:200000
Cons ci ratio: 5.064826e-02	ci left: 2.834298e-02	ci right 2.982071e-02	k: 5815	n:200000
KS ci ratio: 5.244978e-02	ci left: 2.645690e-02	ci right 2.788684e-02	k: 5433	n:200000
INSIG1   200000 perm   44 sec   (4518 perm/sec)   p_kst 2.716500e-02   p_cons 2.907500e-02   p_joint 6.575000e-03

Joint ci ratio: 1.054835e-01	ci left: 6.188567e-03	ci right 6.882303e-03	k: 1371	n:210000
Cons ci ratio: 4.945602e-02	ci left: 2.832876e-02	ci right 2.976999e-02	k: 6099	n:210000
KS ci ratio: 5.123978e-02	ci left: 2.641908e-02	ci right 2.781306e-02	k: 5693	n:210000
INSIG1   210000 perm   47 sec   (4444 perm/sec)   p_kst 2.710952e-02   p_cons 2.904286e-02   p_joint 6.528571e-03

Joint ci ratio: 1.320290e-01	ci left: 3.727340e-03	ci right 4.258587e-03	k: 877	n:220000
Cons ci ratio: 4.828968e-02	ci left: 2.837910e-02	ci right 2.978789e-02	k: 6397	n:220000
KS ci ratio: 4.995482e-02	ci left: 2.654669e-02	ci right 2.791126e-02	k: 5989	n:220000
INSIG1   220000 perm   50 sec   (4370 perm/sec)   p_kst 2.722273e-02   p_cons 2.907727e-02   p_joint 3.986364e-03

Joint ci ratio: 1.007818e-01	ci left: 6.205312e-03	ci right 6.868085e-03	k: 1502	n:230000
Cons ci ratio: 4.717313e-02	ci left: 2.845981e-02	ci right 2.983905e-02	k: 6703	n:230000
KS ci ratio: 4.880982e-02	ci left: 2.661204e-02	ci right 2.794773e-02	k: 6273	n:230000
INSIG1   230000 perm   53 sec   (4302 perm/sec)   p_kst 2.727391e-02   p_cons 2.914348e-02   p_joint 6.530435e-03

Joint ci ratio: 1.266619e-01	ci left: 3.723151e-03	ci right 4.230610e-03	k: 953	n:240000
Cons ci ratio: 4.614418e-02	ci left: 2.851765e-02	ci right 2.986875e-02	k: 7005	n:240000
KS ci ratio: 4.782640e-02	ci left: 2.657755e-02	ci right 2.788390e-02	k: 6534	n:240000
INSIG1   240000 perm   57 sec   (4231 perm/sec)   p_kst 2.722500e-02   p_cons 2.918750e-02   p_joint 3.970833e-03

Joint ci ratio: 1.236508e-01	ci left: 3.756343e-03	ci right 4.255264e-03	k: 1000	n:250000
Cons ci ratio: 4.522757e-02	ci left: 2.851183e-02	ci right 2.983512e-02	k: 7292	n:250000
KS ci ratio: 4.684346e-02	ci left: 2.660935e-02	ci right 2.788965e-02	k: 6811	n:250000
INSIG1   250000 perm   60 sec   (4163 perm/sec)   p_kst 2.724400e-02   p_cons 2.916800e-02   p_joint 4.000000e-03

Joint ci ratio: 1.209026e-01	ci left: 3.783384e-03	ci right 4.273928e-03	k: 1046	n:260000
Cons ci ratio: 4.426735e-02	ci left: 2.862845e-02	ci right 2.992822e-02	k: 7611	n:260000
KS ci ratio: 4.590543e-02	ci left: 2.665416e-02	ci right 2.791025e-02	k: 7092	n:260000
INSIG1   260000 perm   63 sec   (4104 perm/sec)   p_kst 2.727692e-02   p_cons 2.927308e-02   p_joint 4.023077e-03

Joint ci ratio: 1.186573e-01	ci left: 3.786968e-03	ci right 4.268219e-03	k: 1086	n:270000
Cons ci ratio: 4.341940e-02	ci left: 2.866708e-02	ci right 2.994305e-02	k: 7911	n:270000
KS ci ratio: 4.503414e-02	ci left: 2.668124e-02	ci right 2.791412e-02	k: 7369	n:270000
INSIG1   270000 perm   67 sec   (4044 perm/sec)   p_kst 2.729259e-02   p_cons 2.930000e-02   p_joint 4.022222e-03

Joint ci ratio: 9.128452e-02	ci left: 6.244072e-03	ci right 6.844782e-03	k: 1831	n:280000
Cons ci ratio: 4.271494e-02	ci left: 2.857593e-02	ci right 2.982670e-02	k: 8175	n:280000
KS ci ratio: 4.421362e-02	ci left: 2.670306e-02	ci right 2.791390e-02	k: 7645	n:280000
INSIG1   280000 perm   70 sec   (3988 perm/sec)   p_kst 2.730357e-02   p_cons 2.919643e-02   p_joint 6.539286e-03

Outputting figure to mutsig2_images.part000000000085/INSIG1.2_1017_280000_0.027304_0.029196_0.0065393.png
                gene_name: INSIG1
               theta_stop: 0.091 
                    nperm: 280000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.0065 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0068 

Current progress: 92 percent done.
INSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
INSL4   10000 perm   1 sec   (8478 perm/sec)   p_kst 8.069000e-01   p_cons 4.251000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000085/INSL4.2_428_10000_0.8069_0.4251_0.6519.png
                gene_name: INSL4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 94 percent done.
INSL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
INSL6   10000 perm   1 sec   (8014 perm/sec)   p_kst 9.650000e-02   p_cons 3.225000e-01   p_joint 4.991000e-01

Joint ci ratio: 3.856769e-02	ci left: 3.339808e-01	ci right 3.471655e-01	k: 6811	n:20000
Cons ci ratio: 4.028137e-02	ci left: 3.148295e-01	ci right 3.278225e-01	k: 6426	n:20000
KS ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
INSL6   20000 perm   3 sec   (7001 perm/sec)   p_kst 9.355000e-02   p_cons 3.213000e-01   p_joint 3.405500e-01

Outputting figure to mutsig2_images.part000000000085/INSL6.2_650_20000_0.09355_0.3213_0.34055.png
                gene_name: INSL6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 96 percent done.
INTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
Cons ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
INTS6   10000 perm   1 sec   (6787 perm/sec)   p_kst 1.365000e-01   p_cons 1.467000e-01   p_joint 2.172000e-01

Outputting figure to mutsig2_images.part000000000085/INTS6.2_2745_10000_0.1365_0.1467_0.2172.png
                gene_name: INTS6
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
INTS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
KS ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
INTS9   10000 perm   1 sec   (7145 perm/sec)   p_kst 5.074000e-01   p_cons 4.940000e-02   p_joint 3.614000e-01

Joint ci ratio: 2.240998e-02	ci left: 5.978843e-01	ci right 6.114853e-01	k: 12094	n:20000
Cons ci ratio: 1.210749e-01	ci left: 4.677729e-02	ci right 5.285444e-02	k: 995	n:20000
KS ci ratio: 2.739687e-02	ci left: 4.988455e-01	ci right 5.127528e-01	k: 10116	n:20000
INTS9   20000 perm   3 sec   (6327 perm/sec)   p_kst 5.058000e-01   p_cons 4.975000e-02   p_joint 6.047000e-01

Joint ci ratio: 3.397410e-02	ci left: 3.021145e-01	ci right 3.125895e-01	k: 9220	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 2.227178e-02	ci left: 5.023256e-01	ci right 5.136729e-01	k: 15240	n:30000
INTS9   30000 perm   5 sec   (6017 perm/sec)   p_kst 5.080000e-01   p_cons 5.120000e-02   p_joint 3.073333e-01

Outputting figure to mutsig2_images.part000000000085/INTS9.2_2045_30000_0.508_0.0512_0.30733.png
                gene_name: INTS9
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000085
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 85 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 4422081: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000086> was used as the working directory.
Started at Wed Oct 24 17:56:11 2012
Results reported at Wed Oct 24 18:09:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000086.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000086.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 86  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000086.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    814.05 sec.
    Max Memory :      5346 MB
    Max Swap   :      7729 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
86
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 86
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 86: processing genes 7691 - 7780
Calculating significance of each gene.
Using projection method.
7691	INVS	9.502871e-01
7692	IP6K1	8.502543e-01
7693	IP6K2	9.284188e-01
7694	IP6K3	8.447766e-01
7695	IPCEF1	5.436340e-01
7696	IPMK	3.625893e-02
7697	IPO11	1
7698	IPO13	9.538314e-01
7699	IPO4	9.901709e-01
7700	IPO5	9.620806e-01
7701	IPO7	4.326179e-01
7702	IPO8	1.715512e-01
7703	IPO9	1
7704	IPP	5.726665e-01
7705	IPPK	9.447572e-01
7706	IQCA1	8.210517e-01
7707	IQCB1	8.745337e-01
7708	IQCC	1
7709	IQCD	7.271204e-01
7710	IQCE	9.087006e-01
7711	IQCF1	1.375388e-01
7712	IQCF2	5.213656e-01
7713	IQCF3	6.126321e-01
7714	IQCG	1
7715	IQCH	9.595374e-01
7716	IQCJ	7.070796e-02
In gene IQCK the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 776     n = 1	mu =   5.69e-07
7717	IQCK	5.180840e-01
7718	IQGAP1	9.314103e-01
In gene IQGAP2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 4822    n = 1	mu =   9.71e-07
7719	IQGAP2	8.146758e-01
7720	IQGAP3	9.999722e-01
7721	IQSEC1	9.976397e-01
7722	IQSEC2	6.874065e-01
7723	IQSEC3	7.083055e-01
7724	IQUB	2.778325e-01
7725	IRAK1	8.516529e-01
7726	IRAK1BP1	1
7727	IRAK2	7.987378e-01
7728	IRAK3	4.962859e-01
7729	IRAK4	1
7730	IREB2	9.417950e-01
7731	IRF1	7.594163e-01
7732	IRF2	7.851819e-01
7733	IRF2BP1	1
7734	IRF2BP2	7.164213e-01
7735	IRF3	1
7736	IRF4	5.539028e-01
7737	IRF5	1
7738	IRF6	7.247183e-01
7739	IRF7	8.102014e-01
7740	IRF8	4.673766e-01
7741	IRF9	7.021181e-01
7742	IRGC	9.526699e-01
7743	IRGQ	6.655071e-01
7744	IRS1	3.404204e-01
7745	IRS2	5.933144e-01
7746	IRS4	9.931646e-01
7747	IRX1	1.434869e-04
7748	IRX2	1
7749	IRX3	3.701913e-01
7750	IRX4	1.093206e-01
7751	IRX5	5.932836e-01
7752	IRX6	1
7753	ISCA1	1.130724e-01
7754	ISCA1P1	1
7755	ISCA2	1
7756	ISCU	3.902643e-01
7757	ISG15	5.791046e-01
7758	ISG20	7.144420e-01
7759	ISG20L2	5.808127e-01
7760	ISL1	1.104524e-01
7761	ISL2	1
7762	ISLR	4.109087e-01
7763	ISLR2	5.111843e-01
7764	ISM1	7.388671e-01
7765	ISM2	3.965814e-01
7766	ISOC1	4.309907e-01
7767	ISOC2	5.388399e-01
7768	ISPD	5.860584e-01
7769	ISX	7.933869e-02
7770	ISY1	1
7771	ISYNA1	7.372465e-01
7772	ITCH	9.564779e-01
7773	ITFG1	8.106672e-01
7774	ITFG2	8.600120e-01
7775	ITFG3	9.132525e-01
7776	ITGA1	5.250315e-01
7777	ITGA10	8.760519e-01
7778	ITGA11	6.488613e-01
In gene ITGA2 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 3666    n = 1	mu =   3.01e-07
7779	ITGA2	2.799317e-01
7780	ITGA2B	8.527474e-01
Done

Running MutSig 2:
Scatter job 86: processing genes 7691 - 7780
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IRS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
Cons ci ratio: 1.221900e-02	ci left: 9.057627e-01	ci right 9.169963e-01	k: 9115	n:10000
KS ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
IRS4   10000 perm   2 sec   (4194 perm/sec)   p_kst 1.430000e-02   p_cons 9.115000e-01   p_joint 8.020000e-02

Joint ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
Cons ci ratio: 8.673324e-03	ci left: 9.068158e-01	ci right 9.147643e-01	k: 18217	n:20000
KS ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
IRS4   20000 perm   7 sec   (2782 perm/sec)   p_kst 1.560000e-02   p_cons 9.108500e-01   p_joint 5.285000e-02

Joint ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
Cons ci ratio: 7.121203e-03	ci left: 9.066374e-01	ci right 9.131497e-01	k: 27298	n:30000
KS ci ratio: 1.838116e-01	ci left: 1.355952e-02	ci right 1.633558e-02	k: 447	n:30000
IRS4   30000 perm   10 sec   (2998 perm/sec)   p_kst 1.490000e-02   p_cons 9.099333e-01   p_joint 4.143333e-02

Joint ci ratio: 9.031771e-02	ci left: 4.294013e-02	ci right 4.702626e-02	k: 1798	n:40000
Cons ci ratio: 6.188880e-03	ci left: 9.064941e-01	ci right 9.121463e-01	k: 36374	n:40000
KS ci ratio: 1.588266e-01	ci left: 1.380760e-02	ci right 1.621357e-02	k: 599	n:40000
IRS4   40000 perm   13 sec   (3102 perm/sec)   p_kst 1.497500e-02   p_cons 9.093500e-01   p_joint 4.495000e-02

Joint ci ratio: 7.063651e-02	ci left: 5.596689e-02	ci right 6.008461e-02	k: 2900	n:50000
Cons ci ratio: 5.532385e-03	ci left: 9.068907e-01	ci right 9.119416e-01	k: 45472	n:50000
KS ci ratio: 1.455463e-01	ci left: 1.325834e-02	ci right 1.535860e-02	k: 714	n:50000
IRS4   50000 perm   16 sec   (3152 perm/sec)   p_kst 1.428000e-02   p_cons 9.094400e-01   p_joint 5.800000e-02

Joint ci ratio: 7.279610e-02	ci left: 4.441935e-02	ci right 4.779140e-02	k: 2765	n:60000
Cons ci ratio: 5.044877e-03	ci left: 9.072942e-01	ci right 9.118994e-01	k: 54577	n:60000
KS ci ratio: 1.331015e-01	ci left: 1.330076e-02	ci right 1.521332e-02	k: 854	n:60000
IRS4   60000 perm   19 sec   (3171 perm/sec)   p_kst 1.423333e-02   p_cons 9.096167e-01   p_joint 4.608333e-02

Joint ci ratio: 6.657836e-02	ci left: 4.561255e-02	ci right 4.876798e-02	k: 3302	n:70000
Cons ci ratio: 4.685674e-03	ci left: 9.069319e-01	ci right 9.112056e-01	k: 63636	n:70000
KS ci ratio: 1.229471e-01	ci left: 1.343353e-02	ci right 1.520707e-02	k: 1001	n:70000
IRS4   70000 perm   22 sec   (3174 perm/sec)   p_kst 1.430000e-02   p_cons 9.090857e-01   p_joint 4.717143e-02

Joint ci ratio: 6.665796e-02	ci left: 4.005455e-02	ci right 4.282883e-02	k: 3314	n:80000
Cons ci ratio: 4.379326e-03	ci left: 9.072131e-01	ci right 9.112072e-01	k: 72738	n:80000
KS ci ratio: 1.149630e-01	ci left: 1.350084e-02	ci right 1.515965e-02	k: 1145	n:80000
IRS4   80000 perm   25 sec   (3166 perm/sec)   p_kst 1.431250e-02   p_cons 9.092250e-01   p_joint 4.142500e-02

Joint ci ratio: 6.520126e-02	ci left: 3.735078e-02	ci right 3.987907e-02	k: 3474	n:90000
Cons ci ratio: 4.127528e-03	ci left: 9.073826e-01	ci right 9.111466e-01	k: 81835	n:90000
KS ci ratio: 1.077226e-01	ci left: 1.371833e-02	ci right 1.529097e-02	k: 1304	n:90000
IRS4   90000 perm   29 sec   (3153 perm/sec)   p_kst 1.448889e-02   p_cons 9.092778e-01   p_joint 3.860000e-02

Joint ci ratio: 6.322291e-02	ci left: 3.584836e-02	ci right 3.819860e-02	k: 3701	n:100000
Cons ci ratio: 3.920631e-03	ci left: 9.072711e-01	ci right 9.108451e-01	k: 90907	n:100000
KS ci ratio: 1.022663e-01	ci left: 1.373896e-02	ci right 1.522939e-02	k: 1447	n:100000
IRS4   100000 perm   32 sec   (3135 perm/sec)   p_kst 1.447000e-02   p_cons 9.090700e-01   p_joint 3.701000e-02

Joint ci ratio: 6.252511e-02	ci left: 3.342024e-02	ci right 3.558621e-02	k: 3794	n:110000
Cons ci ratio: 3.736252e-03	ci left: 9.074409e-01	ci right 9.108466e-01	k: 100007	n:110000
KS ci ratio: 9.753196e-02	ci left: 1.376637e-02	ci right 1.518668e-02	k: 1591	n:110000
IRS4   110000 perm   35 sec   (3112 perm/sec)   p_kst 1.446364e-02   p_cons 9.091545e-01   p_joint 3.449091e-02

Outputting figure to mutsig2_images.part000000000086/IRS4.17_3778_110000_0.014464_0.90915_0.034491.png
                gene_name: IRS4
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 1 percent done.
IRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
Cons ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
KS ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
IRS1   10000 perm   2 sec   (4506 perm/sec)   p_kst 9.236000e-01   p_cons 7.829000e-01   p_joint 9.775000e-01

Outputting figure to mutsig2_images.part000000000086/IRS1.15_3733_10000_0.9236_0.7829_0.9775.png
                gene_name: IRS1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 3 percent done.
IQGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
IQGAP2   10000 perm   3 sec   (3875 perm/sec)   p_kst 1.170000e-01   p_cons 6.936000e-01   p_joint 2.117000e-01

Joint ci ratio: 5.121541e-02	ci left: 2.207142e-01	ci right 2.323655e-01	k: 4530	n:20000
Cons ci ratio: 1.801823e-02	ci left: 6.965628e-01	ci right 7.092781e-01	k: 14059	n:20000
KS ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
IQGAP2   20000 perm   6 sec   (3560 perm/sec)   p_kst 1.181500e-01   p_cons 7.029500e-01   p_joint 2.265000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP2.13_4872_20000_0.11815_0.70295_0.2265.png
                gene_name: IQGAP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 4 percent done.
IPO8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
KS ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
IPO8   10000 perm   2 sec   (4177 perm/sec)   p_kst 6.510000e-01   p_cons 3.425000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000086/IPO8.12_3214_10000_0.651_0.3425_0.6022.png
                gene_name: IPO8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 6 percent done.
ITGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
Cons ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
KS ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
ITGA2   10000 perm   2 sec   (4613 perm/sec)   p_kst 8.954000e-01   p_cons 2.122000e-01   p_joint 7.004000e-01

Outputting figure to mutsig2_images.part000000000086/ITGA2.11_3666_10000_0.8954_0.2122_0.7004.png
                gene_name: ITGA2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 7 percent done.
ITGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
ITGA11   10000 perm   2 sec   (4469 perm/sec)   p_kst 9.521000e-01   p_cons 5.710000e-02   p_joint 1.883000e-01

Joint ci ratio: 4.939283e-02	ci left: 2.335489e-01	ci right 2.454269e-01	k: 4789	n:20000
Cons ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
KS ci ratio: 6.226662e-03	ci left: 9.489460e-01	ci right 9.549217e-01	k: 19040	n:20000
ITGA11   20000 perm   5 sec   (4054 perm/sec)   p_kst 9.520000e-01   p_cons 5.755000e-02   p_joint 2.394500e-01

Joint ci ratio: 4.508549e-02	ci left: 1.967090e-01	ci right 2.058156e-01	k: 6037	n:30000
Cons ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
KS ci ratio: 5.061065e-03	ci left: 9.499298e-01	ci right 9.547821e-01	k: 28572	n:30000
ITGA11   30000 perm   8 sec   (3909 perm/sec)   p_kst 9.524000e-01   p_cons 5.640000e-02   p_joint 2.012333e-01

Outputting figure to mutsig2_images.part000000000086/ITGA11.10_3687_30000_0.9524_0.0564_0.20123.png
                gene_name: ITGA11
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
IRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
Cons ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
KS ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
IRX1   10000 perm   2 sec   (5234 perm/sec)   p_kst 6.000000e-01   p_cons 2.100000e-01   p_joint 5.042000e-01

Outputting figure to mutsig2_images.part000000000086/IRX1.9_1459_10000_0.6_0.21_0.5042.png
                gene_name: IRX1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 10 percent done.
ITGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
Cons ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
ITGA1   10000 perm   2 sec   (4675 perm/sec)   p_kst 7.204000e-01   p_cons 1.212000e-01   p_joint 3.824000e-01

Joint ci ratio: 3.870546e-02	ci left: 3.323886e-01	ci right 3.455583e-01	k: 6779	n:20000
Cons ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
KS ci ratio: 1.763717e-02	ci left: 7.054674e-01	ci right 7.180710e-01	k: 14236	n:20000
ITGA1   20000 perm   5 sec   (4232 perm/sec)   p_kst 7.118000e-01   p_cons 1.186500e-01   p_joint 3.389500e-01

Outputting figure to mutsig2_images.part000000000086/ITGA1.9_3656_20000_0.7118_0.11865_0.33895.png
                gene_name: ITGA1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 12 percent done.
IPO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
Cons ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
KS ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
IPO7   10000 perm   2 sec   (4866 perm/sec)   p_kst 7.034000e-01   p_cons 4.237000e-01   p_joint 8.392000e-01

Outputting figure to mutsig2_images.part000000000086/IPO7.8_3217_10000_0.7034_0.4237_0.8392.png
                gene_name: IPO7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 13 percent done.
IPMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
Cons ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
KS ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
IPMK   10000 perm   2 sec   (5776 perm/sec)   p_kst 7.889000e-01   p_cons 7.280000e-02   p_joint 2.193000e-01

Joint ci ratio: 5.081680e-02	ci left: 2.234390e-01	ci right 2.351398e-01	k: 4585	n:20000
Cons ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
KS ci ratio: 1.363835e-02	ci left: 7.995409e-01	ci right 8.105702e-01	k: 16102	n:20000
IPMK   20000 perm   4 sec   (5142 perm/sec)   p_kst 8.051000e-01   p_cons 7.225000e-02   p_joint 2.292500e-01

Outputting figure to mutsig2_images.part000000000086/IPMK.7_1275_20000_0.8051_0.07225_0.22925.png
                gene_name: IPMK
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 15 percent done.
IRX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
IRX2   10000 perm   2 sec   (5434 perm/sec)   p_kst 2.858000e-01   p_cons 9.452000e-01   p_joint 5.415000e-01

Outputting figure to mutsig2_images.part000000000086/IRX2.7_1432_10000_0.2858_0.9452_0.5415.png
                gene_name: IRX2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 16 percent done.
ITGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
KS ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
ITGA10   10000 perm   2 sec   (4750 perm/sec)   p_kst 5.287000e-01   p_cons 9.096000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000086/ITGA10.7_3624_10000_0.5287_0.9096_0.6558.png
                gene_name: ITGA10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 18 percent done.
IQGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
IQGAP3   10000 perm   2 sec   (4670 perm/sec)   p_kst 3.161000e-01   p_cons 1.520000e-02   p_joint 4.600000e-02

Joint ci ratio: 1.708341e-01	ci left: 2.345530e-02	ci right 2.788407e-02	k: 512	n:20000
Cons ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
KS ci ratio: 4.092263e-02	ci left: 3.080176e-01	ci right 3.209363e-01	k: 6289	n:20000
IQGAP3   20000 perm   5 sec   (4209 perm/sec)   p_kst 3.144500e-01   p_cons 1.380000e-02   p_joint 2.560000e-02

Joint ci ratio: 1.535327e-01	ci left: 1.963185e-02	ci right 2.292844e-02	k: 637	n:30000
Cons ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
KS ci ratio: 3.362881e-02	ci left: 3.064604e-01	ci right 3.169761e-01	k: 9351	n:30000
IQGAP3   30000 perm   7 sec   (4028 perm/sec)   p_kst 3.117000e-01   p_cons 1.430000e-02   p_joint 2.123333e-02

Joint ci ratio: 1.102240e-01	ci left: 2.895814e-02	ci right 3.236045e-02	k: 1225	n:40000
Cons ci ratio: 1.635980e-01	ci left: 1.299143e-02	ci right 1.532988e-02	k: 565	n:40000
KS ci ratio: 2.915625e-02	ci left: 3.066891e-01	ci right 3.157883e-01	k: 12449	n:40000
IQGAP3   40000 perm   10 sec   (3927 perm/sec)   p_kst 3.112250e-01   p_cons 1.412500e-02   p_joint 3.062500e-02

Joint ci ratio: 1.128579e-01	ci left: 2.222881e-02	ci right 2.490690e-02	k: 1177	n:50000
Cons ci ratio: 1.449306e-01	ci left: 1.337404e-02	ci right 1.548289e-02	k: 720	n:50000
KS ci ratio: 2.604231e-02	ci left: 3.077606e-01	ci right 3.159012e-01	k: 15591	n:50000
IQGAP3   50000 perm   13 sec   (3845 perm/sec)   p_kst 3.118200e-01   p_cons 1.440000e-02   p_joint 2.354000e-02

Joint ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
Cons ci ratio: 1.314731e-01	ci left: 1.363933e-02	ci right 1.557470e-02	k: 875	n:60000
KS ci ratio: 2.375242e-02	ci left: 3.084930e-01	ci right 3.159252e-01	k: 18732	n:60000
IQGAP3   60000 perm   16 sec   (3770 perm/sec)   p_kst 3.122000e-01   p_cons 1.458333e-02   p_joint 2.836667e-02

Joint ci ratio: 8.886990e-02	ci left: 2.583974e-02	ci right 2.825682e-02	k: 1892	n:70000
Cons ci ratio: 1.212399e-01	ci left: 1.382147e-02	ci right 1.561908e-02	k: 1029	n:70000
KS ci ratio: 2.198913e-02	ci left: 3.087964e-01	ci right 3.156763e-01	k: 21856	n:70000
IQGAP3   70000 perm   19 sec   (3699 perm/sec)   p_kst 3.122286e-01   p_cons 1.470000e-02   p_joint 2.702857e-02

Joint ci ratio: 7.963152e-02	ci left: 2.822801e-02	ci right 3.058128e-02	k: 2351	n:80000
Cons ci ratio: 1.130758e-01	ci left: 1.396248e-02	ci right 1.564798e-02	k: 1183	n:80000
KS ci ratio: 2.056801e-02	ci left: 3.090394e-01	ci right 3.154742e-01	k: 24980	n:80000
IQGAP3   80000 perm   22 sec   (3642 perm/sec)   p_kst 3.122500e-01   p_cons 1.478750e-02   p_joint 2.938750e-02

Joint ci ratio: 7.771972e-02	ci left: 2.641948e-02	ci right 2.856667e-02	k: 2473	n:90000
Cons ci ratio: 1.065684e-01	ci left: 1.402122e-02	ci right 1.561028e-02	k: 1332	n:90000
KS ci ratio: 1.940055e-02	ci left: 3.090290e-01	ci right 3.150942e-01	k: 28085	n:90000
IQGAP3   90000 perm   25 sec   (3586 perm/sec)   p_kst 3.120556e-01   p_cons 1.480000e-02   p_joint 2.747778e-02

Joint ci ratio: 8.313412e-02	ci left: 2.084502e-02	ci right 2.266286e-02	k: 2174	n:100000
Cons ci ratio: 1.005536e-01	ci left: 1.421671e-02	ci right 1.573162e-02	k: 1496	n:100000
KS ci ratio: 1.838599e-02	ci left: 3.096276e-01	ci right 3.153832e-01	k: 31250	n:100000
IQGAP3   100000 perm   28 sec   (3535 perm/sec)   p_kst 3.125000e-01   p_cons 1.496000e-02   p_joint 2.174000e-02

Joint ci ratio: 6.233821e-02	ci left: 3.361723e-02	ci right 3.578921e-02	k: 3816	n:110000
Cons ci ratio: 9.255488e-02	ci left: 1.530227e-02	ci right 1.679613e-02	k: 1764	n:110000
KS ci ratio: 1.767083e-02	ci left: 3.063515e-01	ci right 3.118222e-01	k: 33999	n:110000
IQGAP3   110000 perm   32 sec   (3479 perm/sec)   p_kst 3.090818e-01   p_cons 1.603636e-02   p_joint 3.469091e-02

Outputting figure to mutsig2_images.part000000000086/IQGAP3.6_5048_110000_0.30908_0.016036_0.034691.png
                gene_name: IQGAP3
               theta_stop: 0.093 
                    nperm: 110000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 19 percent done.
IQSEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
Cons ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
KS ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
IQSEC3   10000 perm   2 sec   (4783 perm/sec)   p_kst 1.895000e-01   p_cons 3.543000e-01   p_joint 4.142000e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC3.6_3684_10000_0.1895_0.3543_0.4142.png
                gene_name: IQSEC3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 21 percent done.
IRAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
Cons ci ratio: 1.205944e-02	ci left: 9.079222e-01	ci right 9.190356e-01	k: 9136	n:10000
KS ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
IRAK3   10000 perm   2 sec   (5193 perm/sec)   p_kst 5.988000e-01   p_cons 9.136000e-01   p_joint 7.013000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK3.6_1839_10000_0.5988_0.9136_0.7013.png
                gene_name: IRAK3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 22 percent done.
IRGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
Cons ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
IRGC   10000 perm   2 sec   (5712 perm/sec)   p_kst 6.606000e-01   p_cons 7.684000e-01   p_joint 9.021000e-01

Outputting figure to mutsig2_images.part000000000086/IRGC.6_1396_10000_0.6606_0.7684_0.9021.png
                gene_name: IRGC
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 24 percent done.
ITCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
Cons ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
KS ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
ITCH   10000 perm   2 sec   (4877 perm/sec)   p_kst 2.276000e-01   p_cons 9.771000e-01   p_joint 3.615000e-01

Outputting figure to mutsig2_images.part000000000086/ITCH.6_2681_10000_0.2276_0.9771_0.3615.png
                gene_name: ITCH
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 25 percent done.
IPO9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 3.051038e-02	ci left: 6.131152e-01	ci right 6.322133e-01	k: 6227	n:10000
IPO9   10000 perm   2 sec   (5152 perm/sec)   p_kst 6.227000e-01   p_cons 7.060000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000086/IPO9.5_3222_10000_0.6227_0.706_0.7275.png
                gene_name: IPO9
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 27 percent done.
IQGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
Cons ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
KS ci ratio: 1.764158e-02	ci left: 8.241191e-01	ci right 8.388872e-01	k: 8316	n:10000
IQGAP1   10000 perm   2 sec   (4383 perm/sec)   p_kst 8.316000e-01   p_cons 9.080000e-02   p_joint 3.095000e-01

Joint ci ratio: 4.402774e-02	ci left: 2.775586e-01	ci right 2.901043e-01	k: 5676	n:20000
Cons ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
KS ci ratio: 1.298498e-02	ci left: 8.146547e-01	ci right 8.253521e-01	k: 16401	n:20000
IQGAP1   20000 perm   5 sec   (4026 perm/sec)   p_kst 8.200500e-01   p_cons 9.295000e-02   p_joint 2.838000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP1.5_5126_20000_0.82005_0.09295_0.2838.png
                gene_name: IQGAP1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
IQUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 2.810815e-02	ci left: 6.510225e-01	ci right 6.696841e-01	k: 6604	n:10000
KS ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
IQUB   10000 perm   2 sec   (5184 perm/sec)   p_kst 3.896000e-01   p_cons 6.604000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000086/IQUB.5_2424_10000_0.3896_0.6604_0.5983.png
                gene_name: IQUB
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
IREB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
Cons ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
KS ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
IREB2   10000 perm   2 sec   (5498 perm/sec)   p_kst 5.284000e-01   p_cons 4.348000e-01   p_joint 6.477000e-01

Outputting figure to mutsig2_images.part000000000086/IREB2.5_2980_10000_0.5284_0.4348_0.6477.png
                gene_name: IREB2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 31 percent done.
IRF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
Cons ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
KS ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
IRF6   10000 perm   2 sec   (5408 perm/sec)   p_kst 2.195000e-01   p_cons 1.393000e-01   p_joint 1.732000e-01

Outputting figure to mutsig2_images.part000000000086/IRF6.5_1432_10000_0.2195_0.1393_0.1732.png
                gene_name: IRF6
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
ISLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
Cons ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
ISLR2   10000 perm   2 sec   (5722 perm/sec)   p_kst 8.370000e-02   p_cons 1.496000e-01   p_joint 4.620000e-02

Joint ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
Cons ci ratio: 6.753912e-02	ci left: 1.392598e-01	ci right 1.490439e-01	k: 2882	n:20000
KS ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
ISLR2   20000 perm   4 sec   (5130 perm/sec)   p_kst 7.885000e-02   p_cons 1.441000e-01   p_joint 4.920000e-02

Joint ci ratio: 1.129984e-01	ci left: 3.638338e-02	ci right 4.077323e-02	k: 1156	n:30000
Cons ci ratio: 5.530650e-02	ci left: 1.394520e-01	ci right 1.474172e-01	k: 4302	n:30000
KS ci ratio: 7.766649e-02	ci left: 7.521887e-02	ci right 8.132976e-02	k: 2347	n:30000
ISLR2   30000 perm   6 sec   (4900 perm/sec)   p_kst 7.823333e-02   p_cons 1.434000e-01   p_joint 3.853333e-02

Joint ci ratio: 9.527697e-02	ci left: 3.866238e-02	ci right 4.255468e-02	k: 1623	n:40000
Cons ci ratio: 4.794250e-02	ci left: 1.397561e-01	ci right 1.466458e-01	k: 5727	n:40000
KS ci ratio: 6.712965e-02	ci left: 7.590705e-02	ci right 8.120432e-02	k: 3141	n:40000
ISLR2   40000 perm   8 sec   (4754 perm/sec)   p_kst 7.852500e-02   p_cons 1.431750e-01   p_joint 4.057500e-02

Outputting figure to mutsig2_images.part000000000086/ISLR2.5_2242_40000_0.078525_0.14317_0.040575.png
                gene_name: ISLR2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 34 percent done.
INVS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
Cons ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
INVS   10000 perm   2 sec   (5076 perm/sec)   p_kst 4.191000e-01   p_cons 4.606000e-01   p_joint 6.009000e-01

Outputting figure to mutsig2_images.part000000000086/INVS.4_3262_10000_0.4191_0.4606_0.6009.png
                gene_name: INVS
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 36 percent done.
IP6K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
Cons ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
KS ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
IP6K2   10000 perm   2 sec   (5675 perm/sec)   p_kst 1.189000e-01   p_cons 3.290000e-02   p_joint 5.970000e-02

Joint ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
Cons ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
KS ci ratio: 7.601789e-02	ci left: 1.128713e-01	ci right 1.218402e-01	k: 2346	n:20000
IP6K2   20000 perm   4 sec   (5074 perm/sec)   p_kst 1.173000e-01   p_cons 3.330000e-02   p_joint 4.610000e-02

Joint ci ratio: 9.973935e-02	ci left: 4.651929e-02	ci right 5.143519e-02	k: 1468	n:30000
Cons ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
KS ci ratio: 6.238536e-02	ci left: 1.126600e-01	ci right 1.199478e-01	k: 3488	n:30000
IP6K2   30000 perm   6 sec   (4851 perm/sec)   p_kst 1.162667e-01   p_cons 3.473333e-02   p_joint 4.893333e-02

Joint ci ratio: 9.690556e-02	ci left: 3.739241e-02	ci right 4.122484e-02	k: 1571	n:40000
Cons ci ratio: 1.037633e-01	ci left: 3.265968e-02	ci right 3.625832e-02	k: 1377	n:40000
KS ci ratio: 5.385730e-02	ci left: 1.137914e-01	ci right 1.201143e-01	k: 4677	n:40000
IP6K2   40000 perm   9 sec   (4706 perm/sec)   p_kst 1.169250e-01   p_cons 3.442500e-02   p_joint 3.927500e-02

Joint ci ratio: 7.071417e-02	ci left: 5.584889e-02	ci right 5.996263e-02	k: 2894	n:50000
Cons ci ratio: 9.410386e-02	ci left: 3.195948e-02	ci right 3.513498e-02	k: 1676	n:50000
KS ci ratio: 4.809472e-02	ci left: 1.144522e-01	ci right 1.201123e-01	k: 5863	n:50000
IP6K2   50000 perm   11 sec   (4589 perm/sec)   p_kst 1.172600e-01   p_cons 3.352000e-02   p_joint 5.788000e-02

Outputting figure to mutsig2_images.part000000000086/IP6K2.4_1874_50000_0.11726_0.03352_0.05788.png
                gene_name: IP6K2
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 37 percent done.
IPCEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
Cons ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
KS ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
IPCEF1   10000 perm   2 sec   (6192 perm/sec)   p_kst 9.834000e-01   p_cons 3.162000e-01   p_joint 6.823000e-01

Outputting figure to mutsig2_images.part000000000086/IPCEF1.4_1357_10000_0.9834_0.3162_0.6823.png
                gene_name: IPCEF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 39 percent done.
IQCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
Cons ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KS ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
IQCB1   10000 perm   2 sec   (5676 perm/sec)   p_kst 8.105000e-01   p_cons 4.310000e-01   p_joint 7.904000e-01

Outputting figure to mutsig2_images.part000000000086/IQCB1.4_1849_10000_0.8105_0.431_0.7904.png
                gene_name: IQCB1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
IQCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
Cons ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
KS ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
IQCF1   10000 perm   2 sec   (6245 perm/sec)   p_kst 1.373000e-01   p_cons 9.460000e-01   p_joint 3.157000e-01

Outputting figure to mutsig2_images.part000000000086/IQCF1.4_634_10000_0.1373_0.946_0.3157.png
                gene_name: IQCF1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 42 percent done.
IQSEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
Cons ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
IQSEC2   10000 perm   2 sec   (4737 perm/sec)   p_kst 1.907000e-01   p_cons 1.635000e-01   p_joint 3.143000e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC2.4_4657_10000_0.1907_0.1635_0.3143.png
                gene_name: IQSEC2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 43 percent done.
IRAK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
Cons ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
KS ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
IRAK4   10000 perm   2 sec   (5830 perm/sec)   p_kst 2.300000e-01   p_cons 2.802000e-01   p_joint 3.816000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK4.4_1427_10000_0.23_0.2802_0.3816.png
                gene_name: IRAK4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
IRGQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
KS ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
IRGQ   10000 perm   2 sec   (5671 perm/sec)   p_kst 9.355000e-01   p_cons 5.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRGQ.4_1880_10000_0.9355_0.5714_1.png
                gene_name: IRGQ
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
IRX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
Cons ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
KS ci ratio: 1.778619e-02	ci left: 8.217801e-01	ci right 8.366276e-01	k: 8293	n:10000
IRX6   10000 perm   2 sec   (5959 perm/sec)   p_kst 8.293000e-01   p_cons 5.880000e-01   p_joint 8.323000e-01

Outputting figure to mutsig2_images.part000000000086/IRX6.4_1365_10000_0.8293_0.588_0.8323.png
                gene_name: IRX6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 48 percent done.
ISL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
ISL1   10000 perm   2 sec   (6396 perm/sec)   p_kst 5.170000e-02   p_cons 5.619000e-01   p_joint 5.890000e-02

Joint ci ratio: 1.087976e-01	ci left: 5.762467e-02	ci right 6.430368e-02	k: 1218	n:20000
Cons ci ratio: 2.463073e-02	ci left: 5.518354e-01	ci right 5.656476e-01	k: 11175	n:20000
KS ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
ISL1   20000 perm   4 sec   (5655 perm/sec)   p_kst 5.325000e-02   p_cons 5.587500e-01   p_joint 6.090000e-02

Joint ci ratio: 9.216727e-02	ci left: 5.423979e-02	ci right 5.951310e-02	k: 1705	n:30000
Cons ci ratio: 2.004412e-02	ci left: 5.547612e-01	ci right 5.660271e-01	k: 16812	n:30000
KS ci ratio: 9.387118e-02	ci left: 5.234895e-02	ci right 5.753766e-02	k: 1647	n:30000
ISL1   30000 perm   6 sec   (5365 perm/sec)   p_kst 5.490000e-02   p_cons 5.604000e-01   p_joint 5.683333e-02

Outputting figure to mutsig2_images.part000000000086/ISL1.4_1074_30000_0.0549_0.5604_0.056833.png
                gene_name: ISL1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.060 

Current progress: 49 percent done.
ISLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
Cons ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
KS ci ratio: 2.182305e-02	ci left: 7.549442e-01	ci right 7.717021e-01	k: 7634	n:10000
ISLR   10000 perm   2 sec   (6257 perm/sec)   p_kst 7.634000e-01   p_cons 3.951000e-01   p_joint 8.239000e-01

Outputting figure to mutsig2_images.part000000000086/ISLR.4_1291_10000_0.7634_0.3951_0.8239.png
                gene_name: ISLR
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 51 percent done.
ISM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
Cons ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
KS ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
ISM2   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.992000e-01   p_cons 3.714000e-01   p_joint 6.809000e-01

Outputting figure to mutsig2_images.part000000000086/ISM2.4_1744_10000_0.7992_0.3714_0.6809.png
                gene_name: ISM2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 52 percent done.
ISX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
Cons ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
KS ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
ISX   10000 perm   2 sec   (6473 perm/sec)   p_kst 3.489000e-01   p_cons 7.181000e-01   p_joint 5.702000e-01

Outputting figure to mutsig2_images.part000000000086/ISX.4_754_10000_0.3489_0.7181_0.5702.png
                gene_name: ISX
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 54 percent done.
ITGA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
Cons ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
KS ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
ITGA2B   10000 perm   2 sec   (5109 perm/sec)   p_kst 1.307000e-01   p_cons 7.803000e-01   p_joint 2.365000e-01

Joint ci ratio: 5.225271e-02	ci left: 2.138292e-01	ci right 2.253524e-01	k: 4391	n:20000
Cons ci ratio: 1.502730e-02	ci left: 7.669788e-01	ci right 7.786418e-01	k: 15457	n:20000
KS ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
ITGA2B   20000 perm   4 sec   (4633 perm/sec)   p_kst 1.293000e-01   p_cons 7.728500e-01   p_joint 2.195500e-01

Outputting figure to mutsig2_images.part000000000086/ITGA2B.4_3240_20000_0.1293_0.77285_0.21955.png
                gene_name: ITGA2B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
IPO13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.645999e-02	ci left: 5.262664e-01	ci right 5.459125e-01	k: 5361	n:10000
Cons ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
KS ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
IPO13   10000 perm   2 sec   (5589 perm/sec)   p_kst 5.285000e-01   p_cons 4.085000e-01   p_joint 5.361000e-01

Outputting figure to mutsig2_images.part000000000086/IPO13.3_2972_10000_0.5285_0.4085_0.5361.png
                gene_name: IPO13
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 57 percent done.
IPO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
Cons ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
KS ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
IPO5   10000 perm   2 sec   (5425 perm/sec)   p_kst 5.837000e-01   p_cons 1.021000e-01   p_joint 4.627000e-01

Joint ci ratio: 3.008732e-02	ci left: 4.521251e-01	ci right 4.659868e-01	k: 9181	n:20000
Cons ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
KS ci ratio: 2.335212e-02	ci left: 5.779841e-01	ci right 5.916913e-01	k: 11697	n:20000
IPO5   20000 perm   4 sec   (4826 perm/sec)   p_kst 5.848500e-01   p_cons 9.900000e-02   p_joint 4.590500e-01

Outputting figure to mutsig2_images.part000000000086/IPO5.3_3456_20000_0.58485_0.099_0.45905.png
                gene_name: IPO5
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 58 percent done.
IPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
IPP   10000 perm   2 sec   (5832 perm/sec)   p_kst 7.586000e-01   p_cons 1.869000e-01   p_joint 5.566000e-01

Outputting figure to mutsig2_images.part000000000086/IPP.3_1889_10000_0.7586_0.1869_0.5566.png
                gene_name: IPP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 60 percent done.
IQCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
Cons ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
KS ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
IQCA1   10000 perm   2 sec   (5791 perm/sec)   p_kst 5.508000e-01   p_cons 4.172000e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000086/IQCA1.3_2545_10000_0.5508_0.4172_0.7682.png
                gene_name: IQCA1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 61 percent done.
IQCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
IQCG   10000 perm   2 sec   (6006 perm/sec)   p_kst 6.377000e-01   p_cons 1.424000e-01   p_joint 3.199000e-01

Outputting figure to mutsig2_images.part000000000086/IQCG.3_1372_10000_0.6377_0.1424_0.3199.png
                gene_name: IQCG
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 63 percent done.
IQCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
IQCH   10000 perm   2 sec   (5229 perm/sec)   p_kst 2.313000e-01   p_cons 4.800000e-03   p_joint 5.800000e-03

Joint ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
Cons ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
KS ci ratio: 5.008043e-02	ci left: 2.285925e-01	ci right 2.403848e-01	k: 4689	n:20000
IQCH   20000 perm   4 sec   (4705 perm/sec)   p_kst 2.344500e-01   p_cons 4.600000e-03   p_joint 1.145000e-02

Joint ci ratio: 2.294711e-01	ci left: 8.527638e-03	ci right 1.076886e-02	k: 288	n:30000
Cons ci ratio: 3.404351e-01	ci left: 3.652208e-03	ci right 5.179552e-03	k: 131	n:30000
KS ci ratio: 4.114279e-02	ci left: 2.274977e-01	ci right 2.370876e-01	k: 6968	n:30000
IQCH   30000 perm   7 sec   (4506 perm/sec)   p_kst 2.322667e-01   p_cons 4.366667e-03   p_joint 9.600000e-03

Joint ci ratio: 2.471435e-01	ci left: 5.477738e-03	ci right 7.045240e-03	k: 249	n:40000
Cons ci ratio: 2.717496e-01	ci left: 4.472165e-03	ci right 5.901120e-03	k: 206	n:40000
KS ci ratio: 3.570083e-02	ci left: 2.274482e-01	ci right 2.357408e-01	k: 9263	n:40000
IQCH   40000 perm   9 sec   (4371 perm/sec)   p_kst 2.315750e-01   p_cons 5.150000e-03   p_joint 6.225000e-03

Joint ci ratio: 1.756737e-01	ci left: 8.993356e-03	ci right 1.074425e-02	k: 492	n:50000
Cons ci ratio: 2.392563e-01	ci left: 4.701240e-03	ci right 5.997209e-03	k: 266	n:50000
KS ci ratio: 3.191389e-02	ci left: 2.280870e-01	ci right 2.355042e-01	k: 11589	n:50000
IQCH   50000 perm   12 sec   (4260 perm/sec)   p_kst 2.317800e-01   p_cons 5.320000e-03   p_joint 9.840000e-03

Joint ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
Cons ci ratio: 2.171872e-01	ci left: 4.813530e-03	ci right 6.001748e-03	k: 323	n:60000
KS ci ratio: 2.913874e-02	ci left: 2.283453e-01	ci right 2.351140e-01	k: 13903	n:60000
IQCH   60000 perm   14 sec   (4166 perm/sec)   p_kst 2.317167e-01   p_cons 5.383333e-03   p_joint 9.466667e-03

Joint ci ratio: 1.846077e-01	ci left: 5.809024e-03	ci right 7.003874e-03	k: 447	n:70000
Cons ci ratio: 2.038048e-01	ci left: 4.721322e-03	ci right 5.806024e-03	k: 367	n:70000
KS ci ratio: 2.645051e-02	ci left: 2.356596e-01	ci right 2.419907e-01	k: 16717	n:70000
IQCH   70000 perm   17 sec   (4085 perm/sec)   p_kst 2.388143e-01   p_cons 5.242857e-03   p_joint 6.385714e-03

Joint ci ratio: 1.791365e-01	ci left: 5.416863e-03	ci right 6.494439e-03	k: 475	n:80000
Cons ci ratio: 1.910012e-01	ci left: 4.737178e-03	ci right 5.749212e-03	k: 418	n:80000
KS ci ratio: 2.478419e-02	ci left: 2.352514e-01	ci right 2.411676e-01	k: 19056	n:80000
IQCH   80000 perm   20 sec   (4013 perm/sec)   p_kst 2.382000e-01   p_cons 5.225000e-03   p_joint 5.937500e-03

Joint ci ratio: 1.660306e-01	ci left: 5.644318e-03	ci right 6.676790e-03	k: 553	n:90000
Cons ci ratio: 1.778859e-01	ci left: 4.889171e-03	ci right 5.854243e-03	k: 482	n:90000
KS ci ratio: 2.336828e-02	ci left: 2.353978e-01	ci right 2.409747e-01	k: 21436	n:90000
IQCH   90000 perm   23 sec   (3944 perm/sec)   p_kst 2.381778e-01   p_cons 5.355556e-03   p_joint 6.144444e-03

Joint ci ratio: 1.311096e-01	ci left: 8.278798e-03	ci right 9.449956e-03	k: 885	n:100000
Cons ci ratio: 1.704692e-01	ci left: 4.811496e-03	ci right 5.717565e-03	k: 525	n:100000
KS ci ratio: 2.215561e-02	ci left: 2.357616e-01	ci right 2.410535e-01	k: 23840	n:100000
IQCH   100000 perm   26 sec   (3883 perm/sec)   p_kst 2.384000e-01   p_cons 5.250000e-03   p_joint 8.850000e-03

Joint ci ratio: 1.050126e-01	ci left: 1.185177e-02	ci right 1.317412e-02	k: 1375	n:110000
Cons ci ratio: 1.619183e-01	ci left: 4.870738e-03	ci right 5.737477e-03	k: 582	n:110000
KS ci ratio: 2.115479e-02	ci left: 2.353680e-01	ci right 2.404094e-01	k: 26167	n:110000
IQCH   110000 perm   29 sec   (3823 perm/sec)   p_kst 2.378818e-01   p_cons 5.290909e-03   p_joint 1.250000e-02

Joint ci ratio: 1.046076e-01	ci left: 1.096124e-02	ci right 1.217921e-02	k: 1387	n:120000
Cons ci ratio: 1.558898e-01	ci left: 4.832929e-03	ci right 5.657926e-03	k: 628	n:120000
KS ci ratio: 2.025087e-02	ci left: 2.355346e-01	ci right 2.403614e-01	k: 28553	n:120000
IQCH   120000 perm   32 sec   (3763 perm/sec)   p_kst 2.379417e-01   p_cons 5.233333e-03   p_joint 1.155833e-02

Joint ci ratio: 1.042380e-01	ci left: 1.020026e-02	ci right 1.132942e-02	k: 1398	n:130000
Cons ci ratio: 1.475503e-01	ci left: 5.001429e-03	ci right 5.805491e-03	k: 701	n:130000
KS ci ratio: 1.945826e-02	ci left: 2.355951e-01	ci right 2.402320e-01	k: 30928	n:130000
IQCH   130000 perm   35 sec   (3707 perm/sec)   p_kst 2.379077e-01   p_cons 5.392308e-03   p_joint 1.075385e-02

Joint ci ratio: 1.037554e-01	ci left: 9.568906e-03	ci right 1.062296e-02	k: 1412	n:140000
Cons ci ratio: 1.420886e-01	ci left: 5.022813e-03	ci right 5.797888e-03	k: 756	n:140000
KS ci ratio: 1.874165e-02	ci left: 2.358494e-01	ci right 2.403186e-01	k: 33331	n:140000
IQCH   140000 perm   38 sec   (3653 perm/sec)   p_kst 2.380786e-01   p_cons 5.400000e-03   p_joint 1.008571e-02

Joint ci ratio: 9.107383e-02	ci left: 1.164405e-02	ci right 1.276159e-02	k: 1829	n:150000
Cons ci ratio: 1.359350e-01	ci left: 5.138421e-03	ci right 5.894219e-03	k: 826	n:150000
KS ci ratio: 1.811410e-02	ci left: 2.357669e-01	ci right 2.400832e-01	k: 35688	n:150000
IQCH   150000 perm   42 sec   (3587 perm/sec)   p_kst 2.379200e-01   p_cons 5.506667e-03   p_joint 1.219333e-02

Joint ci ratio: 7.761158e-02	ci left: 1.508428e-02	ci right 1.630836e-02	k: 2510	n:160000
Cons ci ratio: 1.313294e-01	ci left: 5.173700e-03	ci right 5.906893e-03	k: 885	n:160000
KS ci ratio: 1.754291e-02	ci left: 2.357530e-01	ci right 2.399315e-01	k: 38054	n:160000
IQCH   160000 perm   45 sec   (3540 perm/sec)   p_kst 2.378375e-01   p_cons 5.531250e-03   p_joint 1.568750e-02

Joint ci ratio: 7.257727e-02	ci left: 1.625792e-02	ci right 1.748805e-02	k: 2867	n:170000
Cons ci ratio: 1.280510e-01	ci left: 5.131167e-03	ci right 5.838800e-03	k: 931	n:170000
KS ci ratio: 1.701980e-02	ci left: 2.358012e-01	ci right 2.398548e-01	k: 40430	n:170000
IQCH   170000 perm   49 sec   (3491 perm/sec)   p_kst 2.378235e-01   p_cons 5.476471e-03   p_joint 1.686471e-02

Joint ci ratio: 7.339596e-02	ci left: 1.502710e-02	ci right 1.617747e-02	k: 2807	n:180000
Cons ci ratio: 1.243687e-01	ci left: 5.147394e-03	ci right 5.835347e-03	k: 987	n:180000
KS ci ratio: 1.652946e-02	ci left: 2.360951e-01	ci right 2.400356e-01	k: 42851	n:180000
IQCH   180000 perm   52 sec   (3445 perm/sec)   p_kst 2.380611e-01   p_cons 5.483333e-03   p_joint 1.559444e-02

Joint ci ratio: 6.457427e-02	ci left: 1.841156e-02	ci right 1.964529e-02	k: 3614	n:190000
Cons ci ratio: 1.205811e-01	ci left: 5.197908e-03	ci right 5.869946e-03	k: 1050	n:190000
KS ci ratio: 1.608548e-02	ci left: 2.362177e-01	ci right 2.400534e-01	k: 45245	n:190000
IQCH   190000 perm   56 sec   (3401 perm/sec)   p_kst 2.381316e-01   p_cons 5.526316e-03   p_joint 1.902105e-02

Joint ci ratio: 6.081676e-02	ci left: 1.973073e-02	ci right 2.097322e-02	k: 4069	n:200000
Cons ci ratio: 1.172785e-01	ci left: 5.229093e-03	ci right 5.885363e-03	k: 1110	n:200000
KS ci ratio: 1.567848e-02	ci left: 2.362596e-01	ci right 2.399980e-01	k: 47625	n:200000
IQCH   200000 perm   60 sec   (3357 perm/sec)   p_kst 2.381250e-01   p_cons 5.550000e-03   p_joint 2.034500e-02

Joint ci ratio: 5.950406e-02	ci left: 1.964478e-02	ci right 2.085423e-02	k: 4251	n:210000
Cons ci ratio: 1.144792e-01	ci left: 5.234403e-03	ci right 5.874599e-03	k: 1165	n:210000
KS ci ratio: 1.530089e-02	ci left: 2.362986e-01	ci right 2.399467e-01	k: 50005	n:210000
IQCH   210000 perm   63 sec   (3314 perm/sec)   p_kst 2.381190e-01   p_cons 5.547619e-03   p_joint 2.024286e-02

Joint ci ratio: 5.767172e-02	ci left: 1.997466e-02	ci right 2.116529e-02	k: 4524	n:220000
Cons ci ratio: 1.117793e-01	ci left: 5.248237e-03	ci right 5.873989e-03	k: 1222	n:220000
KS ci ratio: 1.493213e-02	ci left: 2.367521e-01	ci right 2.403184e-01	k: 52477	n:220000
IQCH   220000 perm   67 sec   (3271 perm/sec)   p_kst 2.385318e-01   p_cons 5.554545e-03   p_joint 2.056364e-02

Joint ci ratio: 5.530221e-02	ci left: 2.078671e-02	ci right 2.197322e-02	k: 4916	n:230000
Cons ci ratio: 1.094770e-01	ci left: 5.239883e-03	ci right 5.850940e-03	k: 1274	n:230000
KS ci ratio: 1.460712e-02	ci left: 2.367118e-01	ci right 2.401992e-01	k: 54844	n:230000
IQCH   230000 perm   71 sec   (3232 perm/sec)   p_kst 2.384522e-01   p_cons 5.539130e-03   p_joint 2.137391e-02

Joint ci ratio: 5.446843e-02	ci left: 2.054928e-02	ci right 2.170399e-02	k: 5069	n:240000
Cons ci ratio: 1.069876e-01	ci left: 5.264790e-03	ci right 5.863912e-03	k: 1334	n:240000
KS ci ratio: 1.427918e-02	ci left: 2.372658e-01	ci right 2.406822e-01	k: 57353	n:240000
IQCH   240000 perm   75 sec   (3190 perm/sec)   p_kst 2.389708e-01   p_cons 5.558333e-03   p_joint 2.112083e-02

Joint ci ratio: 5.428466e-02	ci left: 1.987706e-02	ci right 2.099010e-02	k: 5107	n:250000
Cons ci ratio: 1.051544e-01	ci left: 5.237207e-03	ci right 5.822346e-03	k: 1381	n:250000
KS ci ratio: 1.398772e-02	ci left: 2.373772e-01	ci right 2.407249e-01	k: 59762	n:250000
IQCH   250000 perm   79 sec   (3151 perm/sec)   p_kst 2.390480e-01   p_cons 5.524000e-03   p_joint 2.042800e-02

Joint ci ratio: 5.200605e-02	ci left: 2.082818e-02	ci right 2.194406e-02	k: 5559	n:260000
Cons ci ratio: 1.030864e-01	ci left: 5.245553e-03	ci right 5.819400e-03	k: 1437	n:260000
KS ci ratio: 1.371936e-02	ci left: 2.373233e-01	ci right 2.406056e-01	k: 62130	n:260000
IQCH   260000 perm   84 sec   (3112 perm/sec)   p_kst 2.389615e-01   p_cons 5.526923e-03   p_joint 2.138077e-02

Joint ci ratio: 5.244761e-02	ci left: 1.973846e-02	ci right 2.080521e-02	k: 5472	n:270000
Cons ci ratio: 1.010339e-01	ci left: 5.264216e-03	ci right 5.827959e-03	k: 1496	n:270000
KS ci ratio: 1.346038e-02	ci left: 2.374219e-01	ci right 2.406430e-01	k: 64538	n:270000
IQCH   270000 perm   88 sec   (3075 perm/sec)   p_kst 2.390296e-01   p_cons 5.540741e-03   p_joint 2.026667e-02

Joint ci ratio: 5.140879e-02	ci left: 1.981962e-02	ci right 2.086891e-02	k: 5695	n:280000
Cons ci ratio: 9.909926e-02	ci left: 5.281652e-03	ci right 5.835801e-03	k: 1555	n:280000
KS ci ratio: 1.320595e-02	ci left: 2.377776e-01	ci right 2.409421e-01	k: 67020	n:280000
IQCH   280000 perm   92 sec   (3039 perm/sec)   p_kst 2.393571e-01   p_cons 5.553571e-03   p_joint 2.033929e-02

Outputting figure to mutsig2_images.part000000000086/IQCH.3_3296_280000_0.23936_0.0055536_0.020339.png
                gene_name: IQCH
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0053 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 64 percent done.
IQCJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
Cons ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
IQCJ   10000 perm   1 sec   (6715 perm/sec)   p_kst 1.950000e-02   p_cons 9.377000e-01   p_joint 5.370000e-02

Joint ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
Cons ci ratio: 7.797534e-03	ci left: 9.230005e-01	ci right 9.302748e-01	k: 18534	n:20000
KS ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
IQCJ   20000 perm   3 sec   (5905 perm/sec)   p_kst 1.910000e-02   p_cons 9.267000e-01   p_joint 9.190000e-02

Joint ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
Cons ci ratio: 6.394213e-03	ci left: 9.230816e-01	ci right 9.290356e-01	k: 27783	n:30000
KS ci ratio: 1.660694e-01	ci left: 1.671749e-02	ci right 1.977682e-02	k: 546	n:30000
IQCJ   30000 perm   5 sec   (5589 perm/sec)   p_kst 1.820000e-02   p_cons 9.261000e-01   p_joint 5.243333e-02

Joint ci ratio: 8.653209e-02	ci left: 4.668446e-02	ci right 5.093134e-02	k: 1951	n:40000
Cons ci ratio: 5.533288e-03	ci left: 9.235943e-01	ci right 9.287436e-01	k: 37048	n:40000
KS ci ratio: 1.451785e-01	ci left: 1.659914e-02	ci right 1.922151e-02	k: 715	n:40000
IQCJ   40000 perm   7 sec   (5390 perm/sec)   p_kst 1.787500e-02   p_cons 9.262000e-01   p_joint 4.877500e-02

Joint ci ratio: 1.126622e-01	ci left: 2.230661e-02	ci right 2.498909e-02	k: 1181	n:50000
Cons ci ratio: 4.977180e-03	ci left: 9.230825e-01	ci right 9.277080e-01	k: 46271	n:50000
KS ci ratio: 1.296308e-01	ci left: 1.679461e-02	ci right 1.914183e-02	k: 897	n:50000
IQCJ   50000 perm   10 sec   (5238 perm/sec)   p_kst 1.794000e-02   p_cons 9.254200e-01   p_joint 2.362000e-02

Joint ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
Cons ci ratio: 4.522136e-03	ci left: 9.239440e-01	ci right 9.281481e-01	k: 55564	n:60000
KS ci ratio: 1.185944e-01	ci left: 1.682177e-02	ci right 1.895856e-02	k: 1072	n:60000
IQCJ   60000 perm   12 sec   (5102 perm/sec)   p_kst 1.786667e-02   p_cons 9.260667e-01   p_joint 2.331667e-02

Joint ci ratio: 6.969119e-02	ci left: 4.173382e-02	ci right 4.476133e-02	k: 3026	n:70000
Cons ci ratio: 4.184745e-03	ci left: 9.241661e-01	ci right 9.280557e-01	k: 64829	n:70000
KS ci ratio: 1.096561e-01	ci left: 1.694457e-02	ci right 1.892425e-02	k: 1254	n:70000
IQCJ   70000 perm   14 sec   (4987 perm/sec)   p_kst 1.791429e-02   p_cons 9.261286e-01   p_joint 4.322857e-02

Joint ci ratio: 7.890856e-02	ci left: 2.874291e-02	ci right 3.111635e-02	k: 2393	n:80000
Cons ci ratio: 3.923471e-03	ci left: 9.239747e-01	ci right 9.276193e-01	k: 74065	n:80000
KS ci ratio: 9.760750e-02	ci left: 1.879702e-02	ci right 2.073803e-02	k: 1580	n:80000
IQCJ   80000 perm   16 sec   (4869 perm/sec)   p_kst 1.975000e-02   p_cons 9.258125e-01   p_joint 2.991250e-02

Outputting figure to mutsig2_images.part000000000086/IQCJ.3_548_80000_0.01975_0.92581_0.029913.png
                gene_name: IQCJ
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 66 percent done.
IQSEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
Cons ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
IQSEC1   10000 perm   2 sec   (5313 perm/sec)   p_kst 9.265000e-01   p_cons 2.084000e-01   p_joint 4.873000e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC1.3_3520_10000_0.9265_0.2084_0.4873.png
                gene_name: IQSEC1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 67 percent done.
IRAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
Cons ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
KS ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
IRAK1   10000 perm   2 sec   (5687 perm/sec)   p_kst 5.389000e-01   p_cons 6.104000e-01   p_joint 8.616000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK1.3_2195_10000_0.5389_0.6104_0.8616.png
                gene_name: IRAK1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 69 percent done.
IRAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
KS ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
IRAK2   10000 perm   2 sec   (6332 perm/sec)   p_kst 9.610000e-01   p_cons 3.963000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRAK2.3_1930_10000_0.961_0.3963_1.png
                gene_name: IRAK2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
IRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
Cons ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
KS ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
IRF4   10000 perm   2 sec   (6010 perm/sec)   p_kst 1.026000e-01   p_cons 1.546000e-01   p_joint 2.276000e-01

Joint ci ratio: 7.470763e-02	ci left: 1.164613e-01	ci right 1.255492e-01	k: 2419	n:20000
Cons ci ratio: 6.534300e-02	ci left: 1.474941e-01	ci right 1.575072e-01	k: 3049	n:20000
KS ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
IRF4   20000 perm   4 sec   (5309 perm/sec)   p_kst 9.940000e-02   p_cons 1.524500e-01   p_joint 1.209500e-01

Outputting figure to mutsig2_images.part000000000086/IRF4.3_1388_20000_0.0994_0.15245_0.12095.png
                gene_name: IRF4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 72 percent done.
IRF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
Cons ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
IRF8   10000 perm   2 sec   (6247 perm/sec)   p_kst 7.350000e-02   p_cons 5.362000e-01   p_joint 2.434000e-01

Joint ci ratio: 6.670328e-02	ci left: 1.423162e-01	ci right 1.521866e-01	k: 2944	n:20000
Cons ci ratio: 2.576731e-02	ci left: 5.294590e-01	ci right 5.433304e-01	k: 10728	n:20000
KS ci ratio: 9.613521e-02	ci left: 7.304863e-02	ci right 8.047497e-02	k: 1534	n:20000
IRF8   20000 perm   4 sec   (5501 perm/sec)   p_kst 7.670000e-02   p_cons 5.364000e-01   p_joint 1.472000e-01

Outputting figure to mutsig2_images.part000000000086/IRF8.3_1313_20000_0.0767_0.5364_0.1472.png
                gene_name: IRF8
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 73 percent done.
IRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
Cons ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
KS ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
IRS2   10000 perm   2 sec   (4983 perm/sec)   p_kst 6.242000e-01   p_cons 1.968000e-01   p_joint 5.616000e-01

Outputting figure to mutsig2_images.part000000000086/IRS2.3_4025_10000_0.6242_0.1968_0.5616.png
                gene_name: IRS2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
IRX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
Cons ci ratio: 1.413942e-03	ci left: 9.979048e-01	ci right 9.993798e-01	k: 9988	n:10000
KS ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
IRX4   10000 perm   2 sec   (5949 perm/sec)   p_kst 2.490000e-02   p_cons 9.988000e-01   p_joint 1.264000e-01

Joint ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
Cons ci ratio: 9.197125e-04	ci left: 9.983954e-01	ci right 9.993499e-01	k: 19979	n:20000
KS ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
IRX4   20000 perm   4 sec   (5270 perm/sec)   p_kst 2.790000e-02   p_cons 9.989500e-01   p_joint 3.995000e-02

Joint ci ratio: 7.790069e-02	ci left: 7.479329e-02	ci right 8.088876e-02	k: 2334	n:30000
Cons ci ratio: 7.509734e-04	ci left: 9.984945e-01	ci right 9.992703e-01	k: 29968	n:30000
KS ci ratio: 1.374380e-01	ci left: 2.458292e-02	ci right 2.824291e-02	k: 791	n:30000
IRX4   30000 perm   6 sec   (5009 perm/sec)   p_kst 2.636667e-02   p_cons 9.989333e-01   p_joint 7.780000e-02

Joint ci ratio: 6.362348e-02	ci left: 8.391068e-02	ci right 8.944950e-02	k: 3466	n:40000
Cons ci ratio: 6.200778e-04	ci left: 9.986674e-01	ci right 9.993066e-01	k: 39961	n:40000
KS ci ratio: 1.177151e-01	ci left: 2.538496e-02	ci right 2.858421e-02	k: 1078	n:40000
IRX4   40000 perm   8 sec   (4820 perm/sec)   p_kst 2.695000e-02   p_cons 9.990250e-01   p_joint 8.665000e-02

Joint ci ratio: 6.549190e-02	ci left: 6.466612e-02	ci right 6.906433e-02	k: 3342	n:50000
Cons ci ratio: 5.656164e-04	ci left: 9.986591e-01	ci right 9.992405e-01	k: 49949	n:50000
KS ci ratio: 1.045630e-01	ci left: 2.590864e-02	ci right 2.878659e-02	k: 1366	n:50000
IRX4   50000 perm   11 sec   (4699 perm/sec)   p_kst 2.732000e-02   p_cons 9.989800e-01   p_joint 6.684000e-02

Joint ci ratio: 5.412873e-02	ci left: 7.820337e-02	ci right 8.257065e-02	k: 4822	n:60000
Cons ci ratio: 4.977838e-04	ci left: 9.987693e-01	ci right 9.992804e-01	k: 59943	n:60000
KS ci ratio: 9.643633e-02	ci left: 2.550609e-02	ci right 2.810662e-02	k: 1607	n:60000
IRX4   60000 perm   13 sec   (4598 perm/sec)   p_kst 2.678333e-02   p_cons 9.990500e-01   p_joint 8.036667e-02

Outputting figure to mutsig2_images.part000000000086/IRX4.3_1580_60000_0.026783_0.99905_0.080367.png
                gene_name: IRX4
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 76 percent done.
ISM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
ISM1   10000 perm   2 sec   (6182 perm/sec)   p_kst 2.950000e-02   p_cons 5.894000e-01   p_joint 1.087000e-01

Joint ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
Cons ci ratio: 2.304809e-02	ci left: 5.843489e-01	ci right 5.980246e-01	k: 11824	n:20000
KS ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
ISM1   20000 perm   4 sec   (5495 perm/sec)   p_kst 2.940000e-02   p_cons 5.912000e-01   p_joint 6.210000e-02

Joint ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
Cons ci ratio: 1.878402e-02	ci left: 5.865135e-01	ci right 5.976686e-01	k: 17763	n:30000
KS ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
ISM1   30000 perm   6 sec   (5227 perm/sec)   p_kst 3.263333e-02   p_cons 5.921000e-01   p_joint 3.416667e-02

Joint ci ratio: 1.036854e-01	ci left: 3.270842e-02	ci right 3.630956e-02	k: 1379	n:40000
Cons ci ratio: 1.625160e-02	ci left: 5.877407e-01	ci right 5.973958e-01	k: 23703	n:40000
KS ci ratio: 1.060980e-01	ci left: 3.124651e-02	ci right 3.477172e-02	k: 1319	n:40000
ISM1   40000 perm   8 sec   (5054 perm/sec)   p_kst 3.297500e-02   p_cons 5.925750e-01   p_joint 3.447500e-02

Joint ci ratio: 9.124323e-02	ci left: 3.397333e-02	ci right 3.724087e-02	k: 1779	n:50000
Cons ci ratio: 1.452677e-02	ci left: 5.885584e-01	ci right 5.971908e-01	k: 29644	n:50000
KS ci ratio: 9.460112e-02	ci left: 3.162724e-02	ci right 3.478726e-02	k: 1659	n:50000
ISM1   50000 perm   10 sec   (4914 perm/sec)   p_kst 3.318000e-02   p_cons 5.928800e-01   p_joint 3.558000e-02

Outputting figure to mutsig2_images.part000000000086/ISM1.3_1419_50000_0.03318_0.59288_0.03558.png
                gene_name: ISM1
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 78 percent done.
ITFG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
ITFG1   10000 perm   2 sec   (5807 perm/sec)   p_kst 8.200000e-02   p_cons 1.521000e-01   p_joint 1.925000e-01

Joint ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
Cons ci ratio: 6.573765e-02	ci left: 1.459651e-01	ci right 1.559366e-01	k: 3018	n:20000
KS ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
ITFG1   20000 perm   4 sec   (5194 perm/sec)   p_kst 8.725000e-02   p_cons 1.509000e-01   p_joint 5.645000e-02

Joint ci ratio: 5.535908e-02	ci left: 1.392214e-01	ci right 1.471812e-01	k: 4295	n:30000
Cons ci ratio: 5.144214e-02	ci left: 1.579788e-01	ci right 1.663534e-01	k: 4864	n:30000
KS ci ratio: 7.208204e-02	ci left: 8.648965e-02	ci right 9.299005e-02	k: 2691	n:30000
ITFG1   30000 perm   6 sec   (4960 perm/sec)   p_kst 8.970000e-02   p_cons 1.621333e-01   p_joint 1.431667e-01

Outputting figure to mutsig2_images.part000000000086/ITFG1.3_1911_30000_0.0897_0.16213_0.14317.png
                gene_name: ITFG1
               theta_stop: 0.072 
                    nperm: 30000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 79 percent done.
IP6K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
KS ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
IP6K1   10000 perm   1 sec   (6683 perm/sec)   p_kst 3.284000e-01   p_cons 4.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IP6K1.2_1346_10000_0.3284_0.4269_1.png
                gene_name: IP6K1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
IPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
KS ci ratio: 5.366825e-02	ci left: 3.384607e-01	ci right 3.572280e-01	k: 3478	n:10000
IPO4   10000 perm   2 sec   (5726 perm/sec)   p_kst 3.478000e-01   p_cons 2.067000e-01   p_joint 3.424000e-01

Outputting figure to mutsig2_images.part000000000086/IPO4.2_3366_10000_0.3478_0.2067_0.3424.png
                gene_name: IPO4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 82 percent done.
IQCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
KS ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
IQCE   10000 perm   2 sec   (6081 perm/sec)   p_kst 8.942000e-01   p_cons 8.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQCE.2_2176_10000_0.8942_0.8911_1.png
                gene_name: IQCE
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
IRF2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
Cons ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
KS ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
IRF2BP2   10000 perm   2 sec   (6232 perm/sec)   p_kst 1.015000e-01   p_cons 8.210000e-02   p_joint 9.851000e-01

Joint ci ratio: 4.341432e-03	ci left: 9.738877e-01	ci right 9.781724e-01	k: 19522	n:20000
Cons ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
KS ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
IRF2BP2   20000 perm   4 sec   (5537 perm/sec)   p_kst 1.048500e-01   p_cons 8.510000e-02   p_joint 9.761000e-01

Outputting figure to mutsig2_images.part000000000086/IRF2BP2.2_1772_20000_0.10485_0.0851_0.9761.png
                gene_name: IRF2BP2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 85 percent done.
IRF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
Cons ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
KS ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
IRF9   10000 perm   2 sec   (6532 perm/sec)   p_kst 7.036000e-01   p_cons 9.040000e-02   p_joint 2.723000e-01

Joint ci ratio: 5.520369e-02	ci left: 1.957616e-01	ci right 2.069253e-01	k: 4026	n:20000
Cons ci ratio: 8.749820e-02	ci left: 8.719570e-02	ci right 9.522361e-02	k: 1823	n:20000
KS ci ratio: 1.817798e-02	ci left: 6.928408e-01	ci right 7.056012e-01	k: 13985	n:20000
IRF9   20000 perm   3 sec   (5757 perm/sec)   p_kst 6.992500e-01   p_cons 9.115000e-02   p_joint 2.013000e-01

Outputting figure to mutsig2_images.part000000000086/IRF9.2_1214_20000_0.69925_0.09115_0.2013.png
                gene_name: IRF9
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 87 percent done.
IRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
KS ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
IRX3   10000 perm   2 sec   (6303 perm/sec)   p_kst 8.382000e-01   p_cons 1.799000e-01   p_joint 3.783000e-01

Outputting figure to mutsig2_images.part000000000086/IRX3.2_1522_10000_0.8382_0.1799_0.3783.png
                gene_name: IRX3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 88 percent done.
IRX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
Cons ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
KS ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
IRX5   10000 perm   2 sec   (6591 perm/sec)   p_kst 7.524000e-01   p_cons 3.708000e-01   p_joint 8.109000e-01

Outputting figure to mutsig2_images.part000000000086/IRX5.2_1464_10000_0.7524_0.3708_0.8109.png
                gene_name: IRX5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 90 percent done.
ISCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
ISCA1   10000 perm   1 sec   (7004 perm/sec)   p_kst 4.341000e-01   p_cons 4.859000e-01   p_joint 9.692000e-01

Outputting figure to mutsig2_images.part000000000086/ISCA1.2_406_10000_0.4341_0.4859_0.9692.png
                gene_name: ISCA1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 91 percent done.
ISG20L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 3.202987e-02	ci left: 5.899187e-01	ci right 6.092232e-01	k: 5996	n:10000
ISG20L2   10000 perm   2 sec   (6534 perm/sec)   p_kst 5.996000e-01   p_cons 1.531000e-01   p_joint 6.211000e-01

Outputting figure to mutsig2_images.part000000000086/ISG20L2.2_1074_10000_0.5996_0.1531_0.6211.png
                gene_name: ISG20L2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 93 percent done.
ISOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
ISOC1   10000 perm   2 sec   (6613 perm/sec)   p_kst 2.490000e-01   p_cons 1.610000e-02   p_joint 5.728000e-01

Joint ci ratio: 2.402701e-02	ci left: 5.640557e-01	ci right 5.778237e-01	k: 11419	n:20000
Cons ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
KS ci ratio: 4.779929e-02	ci left: 2.455976e-01	ci right 2.576747e-01	k: 5032	n:20000
ISOC1   20000 perm   3 sec   (5871 perm/sec)   p_kst 2.516000e-01   p_cons 1.595000e-02   p_joint 5.709500e-01

Joint ci ratio: 1.961770e-02	ci left: 5.653427e-01	ci right 5.765769e-01	k: 17129	n:30000
Cons ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
KS ci ratio: 3.891956e-02	ci left: 2.477569e-01	ci right 2.576243e-01	k: 7580	n:30000
ISOC1   30000 perm   5 sec   (5587 perm/sec)   p_kst 2.526667e-01   p_cons 1.570000e-02   p_joint 5.709667e-01

Joint ci ratio: 1.700405e-02	ci left: 5.656816e-01	ci right 5.754081e-01	k: 22822	n:40000
Cons ci ratio: 1.559489e-01	ci left: 1.433623e-02	ci right 1.678483e-02	k: 621	n:40000
KS ci ratio: 3.370761e-02	ci left: 2.483972e-01	ci right 2.569387e-01	k: 10106	n:40000
ISOC1   40000 perm   7 sec   (5389 perm/sec)   p_kst 2.526500e-01   p_cons 1.552500e-02   p_joint 5.705500e-01

Joint ci ratio: 3.328674e-02	ci left: 2.135127e-01	ci right 2.207601e-01	k: 10856	n:50000
Cons ci ratio: 1.397137e-01	ci left: 1.441612e-02	ci right 1.660066e-02	k: 774	n:50000
KS ci ratio: 3.004996e-02	ci left: 2.500894e-01	ci right 2.577392e-01	k: 12695	n:50000
ISOC1   50000 perm   10 sec   (5227 perm/sec)   p_kst 2.539000e-01   p_cons 1.548000e-02   p_joint 2.171200e-01

Joint ci ratio: 3.060174e-02	ci left: 2.114531e-01	ci right 2.180411e-01	k: 12884	n:60000
Cons ci ratio: 1.285982e-01	ci left: 1.426848e-02	ci right 1.624548e-02	k: 914	n:60000
KS ci ratio: 2.748640e-02	ci left: 2.496745e-01	ci right 2.566494e-01	k: 15189	n:60000
ISOC1   60000 perm   12 sec   (5092 perm/sec)   p_kst 2.531500e-01   p_cons 1.523333e-02   p_joint 2.147333e-01

Joint ci ratio: 2.695273e-02	ci left: 2.289197e-01	ci right 2.351882e-01	k: 16243	n:70000
Cons ci ratio: 1.186365e-01	ci left: 1.444531e-02	ci right 1.628089e-02	k: 1074	n:70000
KS ci ratio: 2.539917e-02	ci left: 2.506504e-01	ci right 2.571129e-01	k: 17771	n:70000
ISOC1   70000 perm   14 sec   (4967 perm/sec)   p_kst 2.538714e-01   p_cons 1.534286e-02   p_joint 2.320429e-01

Joint ci ratio: 1.202325e-02	ci left: 5.671362e-01	ci right 5.740087e-01	k: 45646	n:80000
Cons ci ratio: 1.113696e-01	ci left: 1.440002e-02	ci right 1.611039e-02	k: 1219	n:80000
KS ci ratio: 2.376100e-02	ci left: 2.508245e-01	ci right 2.568684e-01	k: 20307	n:80000
ISOC1   80000 perm   16 sec   (4858 perm/sec)   p_kst 2.538375e-01   p_cons 1.523750e-02   p_joint 5.705750e-01

Joint ci ratio: 2.481912e-02	ci left: 2.143217e-01	ci right 2.197188e-01	k: 19531	n:90000
Cons ci ratio: 1.048259e-01	ci left: 1.449736e-02	ci right 1.611188e-02	k: 1376	n:90000
KS ci ratio: 2.237092e-02	ci left: 2.515238e-01	ci right 2.572254e-01	k: 22893	n:90000
ISOC1   90000 perm   19 sec   (4758 perm/sec)   p_kst 2.543667e-01   p_cons 1.528889e-02   p_joint 2.170111e-01

Joint ci ratio: 1.075713e-02	ci left: 5.673549e-01	ci right 5.735010e-01	k: 57043	n:100000
Cons ci ratio: 9.872828e-02	ci left: 1.475320e-02	ci right 1.629509e-02	k: 1551	n:100000
KS ci ratio: 2.123007e-02	ci left: 2.515434e-01	ci right 2.569509e-01	k: 25424	n:100000
ISOC1   100000 perm   21 sec   (4664 perm/sec)   p_kst 2.542400e-01   p_cons 1.551000e-02   p_joint 5.704300e-01

Outputting figure to mutsig2_images.part000000000086/ISOC1.2_917_100000_0.25424_0.01551_0.57043.png
                gene_name: ISOC1
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.57 

Current progress: 94 percent done.
ISPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
ISPD   10000 perm   2 sec   (6333 perm/sec)   p_kst 3.099000e-01   p_cons 4.900000e-02   p_joint 4.626000e-01

Joint ci ratio: 3.621997e-02	ci left: 3.626058e-01	ci right 3.760322e-01	k: 7386	n:20000
Cons ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
KS ci ratio: 4.074771e-02	ci left: 3.098572e-01	ci right 3.227962e-01	k: 6326	n:20000
ISPD   20000 perm   4 sec   (5593 perm/sec)   p_kst 3.163000e-01   p_cons 4.790000e-02   p_joint 3.693000e-01

Joint ci ratio: 3.128583e-02	ci left: 3.381251e-01	ci right 3.489053e-01	k: 10305	n:30000
Cons ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
KS ci ratio: 3.311844e-02	ci left: 3.130300e-01	ci right 3.236052e-01	k: 9549	n:30000
ISPD   30000 perm   6 sec   (5305 perm/sec)   p_kst 3.183000e-01   p_cons 4.933333e-02   p_joint 3.435000e-01

Outputting figure to mutsig2_images.part000000000086/ISPD.2_1396_30000_0.3183_0.049333_0.3435.png
                gene_name: ISPD
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 96 percent done.
ISYNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
Cons ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KS ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
ISYNA1   10000 perm   2 sec   (6201 perm/sec)   p_kst 1.480000e-01   p_cons 3.977000e-01   p_joint 7.582000e-01

Outputting figure to mutsig2_images.part000000000086/ISYNA1.2_1717_10000_0.148_0.3977_0.7582.png
                gene_name: ISYNA1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 97 percent done.
ITFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
ITFG2   10000 perm   2 sec   (6396 perm/sec)   p_kst 4.910000e-02   p_cons 1.131000e-01   p_joint 1.728000e-01

Joint ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
Cons ci ratio: 7.679852e-02	ci left: 1.108065e-01	ci right 1.197057e-01	k: 2304	n:20000
KS ci ratio: 1.205030e-01	ci left: 4.721434e-02	ci right 5.331725e-02	k: 1004	n:20000
ITFG2   20000 perm   4 sec   (5478 perm/sec)   p_kst 5.020000e-02   p_cons 1.152000e-01   p_joint 1.155500e-01

Joint ci ratio: 6.070437e-02	ci left: 1.183165e-01	ci right 1.257568e-01	k: 3660	n:30000
Cons ci ratio: 6.282427e-02	ci left: 1.112464e-01	ci right 1.184951e-01	k: 3445	n:30000
KS ci ratio: 9.847705e-02	ci left: 4.769098e-02	ci right 5.266326e-02	k: 1504	n:30000
ITFG2   30000 perm   6 sec   (5224 perm/sec)   p_kst 5.013333e-02   p_cons 1.148333e-01   p_joint 1.220000e-01

Outputting figure to mutsig2_images.part000000000086/ITFG2.2_1392_30000_0.050133_0.11483_0.122.png
                gene_name: ITFG2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 99 percent done.
ITFG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
Cons ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
KS ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
ITFG3   10000 perm   2 sec   (6429 perm/sec)   p_kst 6.740000e-01   p_cons 9.760000e-02   p_joint 2.462000e-01

Joint ci ratio: 5.934201e-02	ci left: 1.737585e-01	ci right 1.844350e-01	k: 3581	n:20000
Cons ci ratio: 9.135347e-02	ci left: 8.043612e-02	ci right 8.818524e-02	k: 1685	n:20000
KS ci ratio: 1.929652e-02	ci left: 6.670014e-01	ci right 6.800481e-01	k: 13471	n:20000
ITFG3   20000 perm   4 sec   (5678 perm/sec)   p_kst 6.735500e-01   p_cons 8.425000e-02   p_joint 1.790500e-01

Outputting figure to mutsig2_images.part000000000086/ITFG3.2_1703_20000_0.67355_0.08425_0.17905.png
                gene_name: ITFG3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000086
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 86 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 4422085: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000087> was used as the working directory.
Started at Wed Oct 24 17:57:14 2012
Results reported at Wed Oct 24 18:18:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000087.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000087.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 87  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000087.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1343.67 sec.
    Max Memory :      5286 MB
    Max Swap   :      7870 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
87
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 87
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 87: processing genes 7781 - 7871
Calculating significance of each gene.
Using projection method.
7781	ITGA3	9.207132e-01
7782	ITGA4	7.332364e-01
7783	ITGA5	9.151380e-01
7784	ITGA6	1
7785	ITGA7	9.872856e-01
7786	ITGA8	3.505175e-02
7787	ITGA9	1
7788	ITGAD	9.956309e-01
7789	ITGAE	1.817047e-01
7790	ITGAL	4.915915e-01
7791	ITGAM	1
7792	ITGAV	9.944899e-01
7793	ITGAX	3.336145e-01
7794	ITGB1	1
7795	ITGB1BP1	7.195988e-01
7796	ITGB1BP2	3.674697e-01
7797	ITGB1BP3	3.799809e-01
7798	ITGB2	9.842432e-01
7799	ITGB3	9.477591e-01
7800	ITGB3BP	1
7801	ITGB4	9.979795e-01
7802	ITGB5	9.240003e-01
7803	ITGB6	1
7804	ITGB7	9.638637e-01
7805	ITGB8	8.417515e-01
7806	ITGBL1	1.204628e-02
7807	ITIH1	9.368014e-01
7808	ITIH2	9.894166e-01
7809	ITIH3	9.703071e-01
7810	ITIH4	9.895413e-01
7811	ITIH5	1.941972e-01
7812	ITIH5L	1
7813	ITK	8.239653e-01
7814	ITLN1	6.972370e-02
7815	ITLN2	7.970662e-01
7816	ITM2A	1.900204e-02
7817	ITM2B	5.962924e-01
7818	ITM2C	6.106017e-01
7819	ITPA	7.064200e-01
7820	ITPK1	8.510628e-01
7821	ITPKA	6.336810e-01
7822	ITPKB	1
7823	ITPKC	9.695051e-01
7824	ITPR1	9.966113e-01
7825	ITPR2	9.986258e-01
7826	ITPR3	9.995930e-01
7827	ITPRIP	1
7828	ITPRIPL1	9.078448e-01
7829	ITPRIPL2	9.549993e-01
7830	ITSN1	9.996178e-01
7831	ITSN2	9.807773e-01
7832	IVD	5.867440e-01
7833	IVL	2.700387e-03
7834	IVNS1ABP	4.619892e-01
7835	IWS1	3.318320e-01
7836	IYD	1
7837	IZUMO1	1
7838	JAG1	9.784742e-01
7839	JAG2	9.284576e-01
7840	JAGN1	6.776525e-01
7841	JAK1	7.810739e-01
7842	JAK2	7.875685e-01
7843	JAK3	1
7844	JAKMIP1	4.551867e-01
7845	JAKMIP2	1
7846	JAKMIP3	5.946979e-01
7847	JAM2	2.087562e-02
7848	JAM3	1
7849	JARID2	6.479785e-01
7850	JAZF1	6.739120e-01
7851	JDP2	1
7852	JHDM1D	9.894037e-01
7853	JKAMP	5.937537e-01
7854	JMJD1C	8.813229e-01
7855	JMJD4	8.818633e-01
7856	JMJD5	8.604762e-01
7857	JMJD6	1
7858	JMJD7	1
7859	JMJD7-PLA2G4B	9.857771e-01
7860	JMJD8	1
7861	JMY	5.261899e-01
7862	JOSD1	5.781181e-01
7863	JOSD2	5.754919e-01
7864	JPH1	5.660148e-01
7865	JPH2	1
7866	JPH3	8.596647e-01
7867	JPH4	7.166620e-02
7868	JRK	5.411914e-01
7869	JRKL	3.868626e-01
7870	JSRP1	1
7871	JTB	1
Done

Running MutSig 2:
Scatter job 87: processing genes 7781 - 7871
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ITPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
Cons ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
KS ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
ITPR2   10000 perm   3 sec   (3074 perm/sec)   p_kst 7.440000e-01   p_cons 7.962000e-01   p_joint 9.252000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR2.25_8334_10000_0.744_0.7962_0.9252.png
                gene_name: ITPR2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 2 percent done.
ITGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
Cons ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
KS ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
ITGA8   10000 perm   2 sec   (4347 perm/sec)   p_kst 5.041000e-01   p_cons 1.320000e-01   p_joint 3.459000e-01

Joint ci ratio: 3.777829e-02	ci left: 3.432873e-01	ci right 3.565564e-01	k: 6998	n:20000
Cons ci ratio: 7.479556e-02	ci left: 1.162154e-01	ci right 1.252952e-01	k: 2414	n:20000
KS ci ratio: 2.650950e-02	ci left: 5.152995e-01	ci right 5.291940e-01	k: 10445	n:20000
ITGA8   20000 perm   5 sec   (3957 perm/sec)   p_kst 5.222500e-01   p_cons 1.207000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA8.24_3312_20000_0.52225_0.1207_0.3499.png
                gene_name: ITGA8
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 3 percent done.
ITGAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
Cons ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
KS ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
ITGAL   10000 perm   2 sec   (4026 perm/sec)   p_kst 3.694000e-01   p_cons 2.659000e-01   p_joint 4.044000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAL.20_3637_10000_0.3694_0.2659_0.4044.png
                gene_name: ITGAL
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 5 percent done.
ITGAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
KS ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
ITGAX   10000 perm   3 sec   (3942 perm/sec)   p_kst 2.895000e-01   p_cons 6.800000e-03   p_joint 4.950000e-02

Joint ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
Cons ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
KS ci ratio: 4.450908e-02	ci left: 2.731888e-01	ci right 2.856754e-01	k: 5588	n:20000
ITGAX   20000 perm   6 sec   (3636 perm/sec)   p_kst 2.794000e-01   p_cons 6.500000e-03   p_joint 2.910000e-02

Joint ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
Cons ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
KS ci ratio: 3.641240e-02	ci left: 2.735651e-01	ci right 2.837445e-01	k: 8359	n:30000
ITGAX   30000 perm   9 sec   (3518 perm/sec)   p_kst 2.786333e-01   p_cons 5.633333e-03   p_joint 2.603333e-02

Joint ci ratio: 1.456973e-01	ci left: 1.647862e-02	ci right 1.909206e-02	k: 710	n:40000
Cons ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
KS ci ratio: 3.043504e-02	ci left: 2.886668e-01	ci right 2.976132e-01	k: 11725	n:40000
ITGAX   40000 perm   12 sec   (3445 perm/sec)   p_kst 2.931250e-01   p_cons 6.575000e-03   p_joint 1.775000e-02

Joint ci ratio: 1.198123e-01	ci left: 1.970283e-02	ci right 2.223321e-02	k: 1047	n:50000
Cons ci ratio: 2.154023e-01	ci left: 5.871172e-03	ci right 7.307016e-03	k: 328	n:50000
KS ci ratio: 2.723311e-02	ci left: 2.889729e-01	ci right 2.969712e-01	k: 14648	n:50000
ITGAX   50000 perm   15 sec   (3373 perm/sec)   p_kst 2.929600e-01   p_cons 6.560000e-03   p_joint 2.094000e-02

Joint ci ratio: 1.140766e-01	ci left: 1.819794e-02	ci right 2.041557e-02	k: 1157	n:60000
Cons ci ratio: 1.986195e-01	ci left: 5.809248e-03	ci right 7.105852e-03	k: 386	n:60000
KS ci ratio: 2.480921e-02	ci left: 2.901736e-01	ci right 2.974797e-01	k: 17629	n:60000
ITGAX   60000 perm   18 sec   (3317 perm/sec)   p_kst 2.938167e-01   p_cons 6.433333e-03   p_joint 1.928333e-02

Joint ci ratio: 1.056943e-01	ci left: 1.825191e-02	ci right 2.030250e-02	k: 1348	n:70000
Cons ci ratio: 1.852329e-01	ci left: 5.768140e-03	ci right 6.959050e-03	k: 444	n:70000
KS ci ratio: 2.356993e-02	ci left: 2.798785e-01	ci right 2.865681e-01	k: 19825	n:70000
ITGAX   70000 perm   21 sec   (3261 perm/sec)   p_kst 2.832143e-01   p_cons 6.342857e-03   p_joint 1.925714e-02

Joint ci ratio: 8.854629e-02	ci left: 2.285264e-02	ci right 2.498207e-02	k: 1912	n:80000
Cons ci ratio: 1.898657e-01	ci left: 4.796712e-03	ci right 5.814670e-03	k: 423	n:80000
KS ci ratio: 2.202343e-02	ci left: 2.805405e-01	ci right 2.868002e-01	k: 22693	n:80000
ITGAX   80000 perm   25 sec   (3213 perm/sec)   p_kst 2.836625e-01   p_cons 5.287500e-03   p_joint 2.390000e-02

Joint ci ratio: 1.004005e-01	ci left: 1.581867e-02	ci right 1.750158e-02	k: 1498	n:90000
Cons ci ratio: 1.786311e-01	ci left: 4.846700e-03	ci right 5.807830e-03	k: 478	n:90000
KS ci ratio: 2.077625e-02	ci left: 2.804794e-01	ci right 2.863790e-01	k: 25508	n:90000
ITGAX   90000 perm   28 sec   (3167 perm/sec)   p_kst 2.834222e-01   p_cons 5.311111e-03   p_joint 1.664444e-02

Joint ci ratio: 8.780852e-02	ci left: 1.868129e-02	ci right 2.040673e-02	k: 1953	n:100000
Cons ci ratio: 1.653335e-01	ci left: 5.127698e-03	ci right 6.061330e-03	k: 558	n:100000
KS ci ratio: 1.970394e-02	ci left: 2.807578e-01	ci right 2.863548e-01	k: 28355	n:100000
ITGAX   100000 perm   32 sec   (3124 perm/sec)   p_kst 2.835500e-01   p_cons 5.580000e-03   p_joint 1.953000e-02

Joint ci ratio: 8.853608e-02	ci left: 1.673331e-02	ci right 1.829228e-02	k: 1925	n:110000
Cons ci ratio: 1.587992e-01	ci left: 5.071479e-03	ci right 5.954900e-03	k: 605	n:110000
KS ci ratio: 1.878176e-02	ci left: 2.810010e-01	ci right 2.863377e-01	k: 31203	n:110000
ITGAX   110000 perm   36 sec   (3083 perm/sec)   p_kst 2.836636e-01   p_cons 5.500000e-03   p_joint 1.750000e-02

Joint ci ratio: 8.330758e-02	ci left: 1.736138e-02	ci right 1.887870e-02	k: 2173	n:120000
Cons ci ratio: 1.571506e-01	ci left: 4.752844e-03	ci right 5.571350e-03	k: 618	n:120000
KS ci ratio: 1.797175e-02	ci left: 2.813500e-01	ci right 2.864605e-01	k: 34068	n:120000
ITGAX   120000 perm   39 sec   (3043 perm/sec)   p_kst 2.839000e-01   p_cons 5.150000e-03   p_joint 1.810833e-02

Joint ci ratio: 8.135381e-02	ci left: 1.683183e-02	ci right 1.826673e-02	k: 2280	n:130000
Cons ci ratio: 1.518509e-01	ci left: 4.712611e-03	ci right 5.494330e-03	k: 662	n:130000
KS ci ratio: 1.726248e-02	ci left: 2.815497e-01	ci right 2.864599e-01	k: 36920	n:130000
ITGAX   130000 perm   43 sec   (3005 perm/sec)   p_kst 2.840000e-01   p_cons 5.092308e-03   p_joint 1.753846e-02

Joint ci ratio: 8.215956e-02	ci left: 1.534220e-02	ci right 1.666367e-02	k: 2239	n:140000
Cons ci ratio: 1.470535e-01	ci left: 4.678524e-03	ci right 5.427915e-03	k: 706	n:140000
KS ci ratio: 1.664187e-02	ci left: 2.814607e-01	ci right 2.861911e-01	k: 39735	n:140000
ITGAX   140000 perm   47 sec   (2969 perm/sec)   p_kst 2.838214e-01   p_cons 5.042857e-03   p_joint 1.599286e-02

Joint ci ratio: 8.012339e-02	ci left: 1.507695e-02	ci right 1.634187e-02	k: 2355	n:150000
Cons ci ratio: 1.434538e-01	ci left: 4.597887e-03	ci right 5.314788e-03	k: 742	n:150000
KS ci ratio: 1.607844e-02	ci left: 2.815193e-01	ci right 2.860890e-01	k: 42570	n:150000
ITGAX   150000 perm   51 sec   (2934 perm/sec)   p_kst 2.838000e-01   p_cons 4.946667e-03   p_joint 1.570000e-02

Joint ci ratio: 7.160337e-02	ci left: 1.772868e-02	ci right 1.905135e-02	k: 2941	n:160000
Cons ci ratio: 1.389455e-01	ci left: 4.605952e-03	ci right 5.299673e-03	k: 791	n:160000
KS ci ratio: 1.556790e-02	ci left: 2.815917e-01	ci right 2.860161e-01	k: 45408	n:160000
ITGAX   160000 perm   55 sec   (2900 perm/sec)   p_kst 2.838000e-01   p_cons 4.943750e-03   p_joint 1.838125e-02

Joint ci ratio: 6.763542e-02	ci left: 1.872069e-02	ci right 2.003695e-02	k: 3293	n:170000
Cons ci ratio: 1.348373e-01	ci left: 4.613380e-03	ci right 5.286027e-03	k: 840	n:170000
KS ci ratio: 1.515770e-02	ci left: 2.801963e-01	ci right 2.844817e-01	k: 47997	n:170000
ITGAX   170000 perm   59 sec   (2866 perm/sec)   p_kst 2.823353e-01   p_cons 4.941176e-03   p_joint 1.937059e-02

Joint ci ratio: 6.739174e-02	ci left: 1.782784e-02	ci right 1.907662e-02	k: 3320	n:180000
Cons ci ratio: 1.309991e-01	ci left: 4.625624e-03	ci right 5.279365e-03	k: 890	n:180000
KS ci ratio: 1.463996e-02	ci left: 2.827601e-01	ci right 2.869357e-01	k: 51272	n:180000
ITGAX   180000 perm   63 sec   (2838 perm/sec)   p_kst 2.848444e-01   p_cons 4.944444e-03   p_joint 1.844444e-02

Joint ci ratio: 6.702563e-02	ci left: 1.709113e-02	ci right 1.828154e-02	k: 3359	n:190000
Cons ci ratio: 1.271998e-01	ci left: 4.657208e-03	ci right 5.294882e-03	k: 944	n:190000
KS ci ratio: 1.426027e-02	ci left: 2.825087e-01	ci right 2.865715e-01	k: 54062	n:190000
ITGAX   190000 perm   68 sec   (2806 perm/sec)   p_kst 2.845368e-01   p_cons 4.968421e-03   p_joint 1.767895e-02

Joint ci ratio: 6.555380e-02	ci left: 1.698886e-02	ci right 1.814518e-02	k: 3512	n:200000
Cons ci ratio: 1.237129e-01	ci left: 4.685878e-03	ci right 5.308602e-03	k: 998	n:200000
KS ci ratio: 1.389773e-02	ci left: 2.826031e-01	ci right 2.865631e-01	k: 56916	n:200000
ITGAX   200000 perm   72 sec   (2776 perm/sec)   p_kst 2.845800e-01   p_cons 4.990000e-03   p_joint 1.756000e-02

Joint ci ratio: 6.582030e-02	ci left: 1.606252e-02	ci right 1.716040e-02	k: 3487	n:210000
Cons ci ratio: 1.206130e-01	ci left: 4.702796e-03	ci right 5.310990e-03	k: 1050	n:210000
KS ci ratio: 1.355706e-02	ci left: 2.828228e-01	ci right 2.866879e-01	k: 59798	n:210000
ITGAX   210000 perm   76 sec   (2745 perm/sec)   p_kst 2.847524e-01   p_cons 5.000000e-03   p_joint 1.660476e-02

Joint ci ratio: 6.236608e-02	ci left: 1.709043e-02	ci right 1.819505e-02	k: 3880	n:220000
Cons ci ratio: 1.178425e-01	ci left: 4.709529e-03	ci right 5.303628e-03	k: 1100	n:220000
KS ci ratio: 1.324146e-02	ci left: 2.829872e-01	ci right 2.867639e-01	k: 62672	n:220000
ITGAX   220000 perm   81 sec   (2716 perm/sec)   p_kst 2.848727e-01   p_cons 5.000000e-03   p_joint 1.763636e-02

Joint ci ratio: 6.133783e-02	ci left: 1.691236e-02	ci right 1.798681e-02	k: 4012	n:230000
Cons ci ratio: 1.156592e-01	ci left: 4.682038e-03	ci right 5.260980e-03	k: 1142	n:230000
KS ci ratio: 1.296338e-02	ci left: 2.826220e-01	ci right 2.863139e-01	k: 65427	n:230000
ITGAX   230000 perm   86 sec   (2687 perm/sec)   p_kst 2.844652e-01   p_cons 4.965217e-03   p_joint 1.744348e-02

Joint ci ratio: 6.193593e-02	ci left: 1.590794e-02	ci right 1.692878e-02	k: 3939	n:240000
Cons ci ratio: 1.130667e-01	ci left: 4.701472e-03	ci right 5.268917e-03	k: 1195	n:240000
KS ci ratio: 1.268546e-02	ci left: 2.828202e-01	ci right 2.864350e-01	k: 68310	n:240000
ITGAX   240000 perm   90 sec   (2659 perm/sec)   p_kst 2.846250e-01   p_cons 4.979167e-03   p_joint 1.641250e-02

Joint ci ratio: 5.848587e-02	ci left: 1.713547e-02	ci right 1.817176e-02	k: 4412	n:250000
Cons ci ratio: 1.110439e-01	ci left: 4.684478e-03	ci right 5.239094e-03	k: 1239	n:250000
KS ci ratio: 1.242297e-02	ci left: 2.830593e-01	ci right 2.866017e-01	k: 71207	n:250000
ITGAX   250000 perm   95 sec   (2632 perm/sec)   p_kst 2.848280e-01   p_cons 4.956000e-03   p_joint 1.764800e-02

Joint ci ratio: 5.887357e-02	ci left: 1.627155e-02	ci right 1.726234e-02	k: 4358	n:260000
Cons ci ratio: 1.087435e-01	ci left: 4.702552e-03	ci right 5.247035e-03	k: 1292	n:260000
KS ci ratio: 1.188906e-02	ci left: 2.930862e-01	ci right 2.965953e-01	k: 76658	n:260000
ITGAX   260000 perm   100 sec   (2606 perm/sec)   p_kst 2.948385e-01   p_cons 4.969231e-03   p_joint 1.676154e-02

Joint ci ratio: 5.555297e-02	ci left: 1.760413e-02	ci right 1.861366e-02	k: 4888	n:270000
Cons ci ratio: 1.065009e-01	ci left: 4.726607e-03	ci right 5.261882e-03	k: 1347	n:270000
KS ci ratio: 1.166115e-02	ci left: 2.933209e-01	ci right 2.967650e-01	k: 79661	n:270000
ITGAX   270000 perm   105 sec   (2579 perm/sec)   p_kst 2.950407e-01   p_cons 4.988889e-03   p_joint 1.810370e-02

Joint ci ratio: 5.440499e-02	ci left: 1.770808e-02	ci right 1.870193e-02	k: 5096	n:280000
Cons ci ratio: 1.045040e-01	ci left: 4.738614e-03	ci right 5.264569e-03	k: 1399	n:280000
KS ci ratio: 1.145136e-02	ci left: 2.933397e-01	ci right 2.967217e-01	k: 82608	n:280000
ITGAX   280000 perm   110 sec   (2554 perm/sec)   p_kst 2.950286e-01   p_cons 4.996429e-03   p_joint 1.820000e-02

Joint ci ratio: 5.394495e-02	ci left: 1.740012e-02	ci right 1.836817e-02	k: 5185	n:290000
Cons ci ratio: 1.023676e-01	ci left: 4.773403e-03	ci right 5.291737e-03	k: 1458	n:290000
KS ci ratio: 1.124476e-02	ci left: 2.936435e-01	ci right 2.969675e-01	k: 85638	n:290000
ITGAX   290000 perm   115 sec   (2529 perm/sec)   p_kst 2.953034e-01   p_cons 5.027586e-03   p_joint 1.787931e-02

Joint ci ratio: 5.306256e-02	ci left: 1.739235e-02	ci right 1.834366e-02	k: 5359	n:300000
Cons ci ratio: 1.008591e-01	ci left: 4.757227e-03	ci right 5.265741e-03	k: 1502	n:300000
KS ci ratio: 1.105860e-02	ci left: 2.935648e-01	ci right 2.968325e-01	k: 88559	n:300000
ITGAX   300000 perm   120 sec   (2504 perm/sec)   p_kst 2.951967e-01   p_cons 5.006667e-03   p_joint 1.786333e-02

Joint ci ratio: 5.261553e-02	ci left: 1.712728e-02	ci right 1.805596e-02	k: 5452	n:310000
Cons ci ratio: 9.928653e-02	ci left: 4.754731e-03	ci right 5.254591e-03	k: 1550	n:310000
KS ci ratio: 1.087312e-02	ci left: 2.938072e-01	ci right 2.970224e-01	k: 91578	n:310000
ITGAX   310000 perm   125 sec   (2481 perm/sec)   p_kst 2.954129e-01   p_cons 5.000000e-03   p_joint 1.758710e-02

Outputting figure to mutsig2_images.part000000000087/ITGAX.20_3612_310000_0.29541_0.005_0.017587.png
                gene_name: ITGAX
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0048 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 6 percent done.
ITGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
Cons ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
KS ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
ITGA4   10000 perm   2 sec   (4226 perm/sec)   p_kst 1.565000e-01   p_cons 3.104000e-01   p_joint 2.464000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA4.19_3211_10000_0.1565_0.3104_0.2464.png
                gene_name: ITGA4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 8 percent done.
JMJD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
Cons ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
KS ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
JMJD1C   10000 perm   3 sec   (3542 perm/sec)   p_kst 4.282000e-01   p_cons 3.840000e-01   p_joint 4.346000e-01

Outputting figure to mutsig2_images.part000000000087/JMJD1C.19_7727_10000_0.4282_0.384_0.4346.png
                gene_name: JMJD1C
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 10 percent done.
ITGAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
ITGAD   10000 perm   2 sec   (4150 perm/sec)   p_kst 2.390000e-02   p_cons 1.949000e-01   p_joint 4.040000e-02

Joint ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
Cons ci ratio: 5.621045e-02	ci left: 1.900727e-01	ci right 2.011159e-01	k: 3911	n:20000
KS ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
ITGAD   20000 perm   5 sec   (3801 perm/sec)   p_kst 2.370000e-02   p_cons 1.955500e-01   p_joint 3.585000e-02

Joint ci ratio: 1.468512e-01	ci left: 2.149402e-02	ci right 2.493250e-02	k: 695	n:30000
Cons ci ratio: 4.513229e-02	ci left: 1.963785e-01	ci right 2.054795e-01	k: 6027	n:30000
KS ci ratio: 1.434081e-01	ci left: 2.255495e-02	ci right 2.607133e-02	k: 728	n:30000
ITGAD   30000 perm   8 sec   (3678 perm/sec)   p_kst 2.426667e-02   p_cons 2.009000e-01   p_joint 2.316667e-02

Joint ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
Cons ci ratio: 3.905640e-02	ci left: 1.972309e-01	ci right 2.051125e-01	k: 8046	n:40000
KS ci ratio: 1.220878e-01	ci left: 2.358907e-02	ci right 2.668039e-02	k: 1004	n:40000
ITGAD   40000 perm   11 sec   (3592 perm/sec)   p_kst 2.510000e-02   p_cons 2.011500e-01   p_joint 2.567500e-02

Joint ci ratio: 1.128579e-01	ci left: 2.222881e-02	ci right 2.490690e-02	k: 1177	n:50000
Cons ci ratio: 3.480703e-02	ci left: 1.988061e-01	ci right 2.058685e-01	k: 10116	n:50000
KS ci ratio: 1.072975e-01	ci left: 2.460324e-02	ci right 2.741216e-02	k: 1299	n:50000
ITGAD   50000 perm   14 sec   (3523 perm/sec)   p_kst 2.598000e-02   p_cons 2.023200e-01   p_joint 2.354000e-02

Joint ci ratio: 8.683330e-02	ci left: 3.142176e-02	ci right 3.429032e-02	k: 1970	n:60000
Cons ci ratio: 3.174387e-02	ci left: 1.994231e-01	ci right 2.058723e-01	k: 12158	n:60000
KS ci ratio: 9.833797e-02	ci left: 2.452983e-02	ci right 2.708298e-02	k: 1547	n:60000
ITGAD   60000 perm   17 sec   (3464 perm/sec)   p_kst 2.578333e-02   p_cons 2.026333e-01   p_joint 3.283333e-02

Outputting figure to mutsig2_images.part000000000087/ITGAD.17_3606_60000_0.025783_0.20263_0.032833.png
                gene_name: ITGAD
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 11 percent done.
ITIH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
ITIH5   10000 perm   2 sec   (4263 perm/sec)   p_kst 1.234000e-01   p_cons 3.400000e-03   p_joint 1.110000e-02

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 7.439322e-02	ci left: 1.173467e-01	ci right 1.264635e-01	k: 2437	n:20000
ITIH5   20000 perm   5 sec   (3875 perm/sec)   p_kst 1.218500e-01   p_cons 3.300000e-03   p_joint 4.950000e-03

Joint ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
Cons ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
KS ci ratio: 6.052562e-02	ci left: 1.189416e-01	ci right 1.263984e-01	k: 3679	n:30000
ITIH5   30000 perm   8 sec   (3705 perm/sec)   p_kst 1.226333e-01   p_cons 3.100000e-03   p_joint 3.300000e-03

Joint ci ratio: 2.486493e-01	ci left: 5.407373e-03	ci right 6.965625e-03	k: 246	n:40000
Cons ci ratio: 3.393373e-01	ci left: 2.761793e-03	ci right 3.912178e-03	k: 132	n:40000
KS ci ratio: 5.423879e-02	ci left: 1.123585e-01	ci right 1.186474e-01	k: 4619	n:40000
ITIH5   40000 perm   11 sec   (3596 perm/sec)   p_kst 1.154750e-01   p_cons 3.300000e-03   p_joint 6.150000e-03

Joint ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
Cons ci ratio: 2.966540e-01	ci left: 2.964317e-03	ci right 4.014632e-03	k: 173	n:50000
KS ci ratio: 4.872283e-02	ci left: 1.118204e-01	ci right 1.174245e-01	k: 5730	n:50000
ITIH5   50000 perm   14 sec   (3521 perm/sec)   p_kst 1.146000e-01   p_cons 3.460000e-03   p_joint 6.160000e-03

Joint ci ratio: 2.113626e-01	ci left: 5.097510e-03	ci right 6.317716e-03	k: 341	n:60000
Cons ci ratio: 2.706772e-01	ci left: 3.012190e-03	ci right 3.970161e-03	k: 208	n:60000
KS ci ratio: 4.466571e-02	ci left: 1.112198e-01	ci right 1.163176e-01	k: 6825	n:60000
ITIH5   60000 perm   17 sec   (3456 perm/sec)   p_kst 1.137500e-01   p_cons 3.466667e-03   p_joint 5.683333e-03

Joint ci ratio: 2.273615e-01	ci left: 3.747899e-03	ci right 4.722473e-03	k: 295	n:70000
Cons ci ratio: 2.515494e-01	ci left: 3.022488e-03	ci right 3.905176e-03	k: 241	n:70000
KS ci ratio: 4.145728e-02	ci left: 1.109043e-01	ci right 1.156136e-01	k: 7927	n:70000
ITIH5   70000 perm   21 sec   (3402 perm/sec)   p_kst 1.132429e-01   p_cons 3.442857e-03   p_joint 4.214286e-03

Joint ci ratio: 2.338530e-01	ci left: 3.090837e-03	ci right 3.920812e-03	k: 279	n:80000
Cons ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
KS ci ratio: 3.881013e-02	ci left: 1.109007e-01	ci right 1.153024e-01	k: 9047	n:80000
ITIH5   80000 perm   24 sec   (3353 perm/sec)   p_kst 1.130875e-01   p_cons 3.462500e-03   p_joint 3.487500e-03

Joint ci ratio: 1.566327e-01	ci left: 6.369572e-03	ci right 7.462573e-03	k: 621	n:90000
Cons ci ratio: 2.218972e-01	ci left: 3.072200e-03	ci right 3.849236e-03	k: 310	n:90000
KS ci ratio: 3.662708e-02	ci left: 1.108284e-01	ci right 1.149744e-01	k: 10160	n:90000
ITIH5   90000 perm   27 sec   (3306 perm/sec)   p_kst 1.128889e-01   p_cons 3.444444e-03   p_joint 6.900000e-03

Joint ci ratio: 1.528990e-01	ci left: 6.030527e-03	ci right 7.038416e-03	k: 652	n:100000
Cons ci ratio: 2.100702e-01	ci left: 3.105524e-03	ci right 3.843739e-03	k: 346	n:100000
KS ci ratio: 3.470076e-02	ci left: 1.112028e-01	ci right 1.151397e-01	k: 11316	n:100000
ITIH5   100000 perm   31 sec   (3262 perm/sec)   p_kst 1.131600e-01   p_cons 3.460000e-03   p_joint 6.520000e-03

Joint ci ratio: 1.466388e-01	ci left: 5.981054e-03	ci right 6.936157e-03	k: 709	n:110000
Cons ci ratio: 2.020817e-01	ci left: 3.064610e-03	ci right 3.761978e-03	k: 374	n:110000
KS ci ratio: 3.311995e-02	ci left: 1.110896e-01	ci right 1.148399e-01	k: 12425	n:110000
ITIH5   110000 perm   34 sec   (3215 perm/sec)   p_kst 1.129545e-01   p_cons 3.400000e-03   p_joint 6.445455e-03

Joint ci ratio: 1.467825e-01	ci left: 5.474499e-03	ci right 6.349638e-03	k: 708	n:120000
Cons ci ratio: 1.911691e-01	ci left: 3.157867e-03	ci right 3.833145e-03	k: 418	n:120000
KS ci ratio: 3.159528e-02	ci left: 1.118925e-01	ci right 1.154928e-01	k: 13642	n:120000
ITIH5   120000 perm   38 sec   (3171 perm/sec)   p_kst 1.136833e-01   p_cons 3.483333e-03   p_joint 5.900000e-03

Joint ci ratio: 2.129417e-01	ci left: 2.323198e-03	ci right 2.883972e-03	k: 337	n:130000
Cons ci ratio: 1.865614e-01	ci left: 3.068842e-03	ci right 3.707473e-03	k: 439	n:130000
KS ci ratio: 3.029096e-02	ci left: 1.123918e-01	ci right 1.158562e-01	k: 14835	n:130000
ITIH5   130000 perm   42 sec   (3132 perm/sec)   p_kst 1.141154e-01   p_cons 3.376923e-03   p_joint 2.592308e-03

Joint ci ratio: 1.640001e-01	ci left: 3.730903e-03	ci right 4.404178e-03	k: 568	n:140000
Cons ci ratio: 1.805117e-01	ci left: 3.054079e-03	ci right 3.666775e-03	k: 469	n:140000
KS ci ratio: 2.919141e-02	ci left: 1.124390e-01	ci right 1.157770e-01	k: 15974	n:140000
ITIH5   140000 perm   45 sec   (3094 perm/sec)   p_kst 1.141000e-01   p_cons 3.350000e-03   p_joint 4.057143e-03

Joint ci ratio: 1.564725e-01	ci left: 3.840563e-03	ci right 4.498830e-03	k: 624	n:150000
Cons ci ratio: 1.734553e-01	ci left: 3.098965e-03	ci right 3.693819e-03	k: 508	n:150000
KS ci ratio: 2.823145e-02	ci left: 1.122832e-01	ci right 1.155051e-01	k: 17083	n:150000
ITIH5   150000 perm   49 sec   (3056 perm/sec)   p_kst 1.138867e-01   p_cons 3.386667e-03   p_joint 4.160000e-03

Joint ci ratio: 1.586742e-01	ci left: 3.498417e-03	ci right 4.107280e-03	k: 607	n:160000
Cons ci ratio: 1.684045e-01	ci left: 3.090741e-03	ci right 3.664987e-03	k: 539	n:160000
KS ci ratio: 2.732478e-02	ci left: 1.124094e-01	ci right 1.155296e-01	k: 18234	n:160000
ITIH5   160000 perm   53 sec   (3020 perm/sec)   p_kst 1.139625e-01   p_cons 3.368750e-03   p_joint 3.793750e-03

Joint ci ratio: 1.228565e-01	ci left: 5.587070e-03	ci right 6.324049e-03	k: 1011	n:170000
Cons ci ratio: 1.637707e-01	ci left: 3.083705e-03	ci right 3.639327e-03	k: 570	n:170000
KS ci ratio: 2.645709e-02	ci left: 1.128496e-01	ci right 1.158812e-01	k: 19441	n:170000
ITIH5   170000 perm   57 sec   (2984 perm/sec)   p_kst 1.143588e-01   p_cons 3.352941e-03   p_joint 5.947059e-03

Joint ci ratio: 1.226334e-01	ci left: 5.298168e-03	ci right 5.995676e-03	k: 1015	n:180000
Cons ci ratio: 1.589704e-01	ci left: 3.098983e-03	ci right 3.639429e-03	k: 605	n:180000
KS ci ratio: 2.568818e-02	ci left: 1.130766e-01	ci right 1.160247e-01	k: 20618	n:180000
ITIH5   180000 perm   61 sec   (2949 perm/sec)   p_kst 1.145444e-01   p_cons 3.361111e-03   p_joint 5.638889e-03

Joint ci ratio: 1.248961e-01	ci left: 4.835637e-03	ci right 5.484865e-03	k: 979	n:190000
Cons ci ratio: 1.543275e-01	ci left: 3.122986e-03	ci right 3.650240e-03	k: 642	n:190000
KS ci ratio: 2.502350e-02	ci left: 1.129511e-01	ci right 1.158186e-01	k: 21732	n:190000
ITIH5   190000 perm   65 sec   (2916 perm/sec)   p_kst 1.143789e-01   p_cons 3.378947e-03   p_joint 5.152632e-03

Joint ci ratio: 1.212959e-01	ci left: 4.879779e-03	ci right 5.514693e-03	k: 1038	n:200000
Cons ci ratio: 1.502909e-01	ci left: 3.135169e-03	ci right 3.649390e-03	k: 677	n:200000
KS ci ratio: 2.435975e-02	ci left: 1.132369e-01	ci right 1.160343e-01	k: 22926	n:200000
ITIH5   200000 perm   69 sec   (2883 perm/sec)   p_kst 1.146300e-01   p_cons 3.385000e-03   p_joint 5.190000e-03

Joint ci ratio: 1.119949e-01	ci left: 5.475046e-03	ci right 6.129184e-03	k: 1217	n:210000
Cons ci ratio: 1.465554e-01	ci left: 3.146354e-03	ci right 3.648460e-03	k: 712	n:210000
KS ci ratio: 2.378404e-02	ci left: 1.131742e-01	ci right 1.159031e-01	k: 24052	n:210000
ITIH5   210000 perm   74 sec   (2852 perm/sec)   p_kst 1.145333e-01   p_cons 3.390476e-03   p_joint 5.795238e-03

Joint ci ratio: 1.125687e-01	ci left: 5.173122e-03	ci right 5.794562e-03	k: 1205	n:220000
Cons ci ratio: 1.434706e-01	ci left: 3.139134e-03	ci right 3.628640e-03	k: 743	n:220000
KS ci ratio: 2.322700e-02	ci left: 1.132944e-01	ci right 1.159613e-01	k: 25217	n:220000
ITIH5   220000 perm   78 sec   (2816 perm/sec)   p_kst 1.146227e-01   p_cons 3.377273e-03   p_joint 5.477273e-03

Joint ci ratio: 1.118389e-01	ci left: 5.015793e-03	ci right 5.614169e-03	k: 1221	n:230000
Cons ci ratio: 1.410300e-01	ci left: 3.111667e-03	ci right 3.587941e-03	k: 769	n:230000
KS ci ratio: 2.271415e-02	ci left: 1.133441e-01	ci right 1.159525e-01	k: 26368	n:230000
ITIH5   230000 perm   83 sec   (2786 perm/sec)   p_kst 1.146435e-01   p_cons 3.343478e-03   p_joint 5.308696e-03

Joint ci ratio: 1.099240e-01	ci left: 4.980994e-03	ci right 5.564385e-03	k: 1264	n:240000
Cons ci ratio: 1.380157e-01	ci left: 3.118737e-03	ci right 3.585052e-03	k: 803	n:240000
KS ci ratio: 2.225669e-02	ci left: 1.131831e-01	ci right 1.157346e-01	k: 27469	n:240000
ITIH5   240000 perm   87 sec   (2751 perm/sec)   p_kst 1.144542e-01   p_cons 3.345833e-03   p_joint 5.266667e-03

Joint ci ratio: 1.086482e-01	ci left: 4.898463e-03	ci right 5.465102e-03	k: 1294	n:250000
Cons ci ratio: 1.356749e-01	ci left: 3.102151e-03	ci right 3.557484e-03	k: 831	n:250000
KS ci ratio: 2.179866e-02	ci left: 1.132861e-01	ci right 1.157868e-01	k: 28633	n:250000
ITIH5   250000 perm   92 sec   (2722 perm/sec)   p_kst 1.145320e-01   p_cons 3.324000e-03   p_joint 5.176000e-03

Joint ci ratio: 9.838068e-02	ci left: 5.770530e-03	ci right 6.371330e-03	k: 1577	n:260000
Cons ci ratio: 1.332940e-01	ci left: 3.094339e-03	ci right 3.539923e-03	k: 861	n:260000
KS ci ratio: 2.138198e-02	ci left: 1.132478e-01	ci right 1.156992e-01	k: 29762	n:260000
ITIH5   260000 perm   97 sec   (2693 perm/sec)   p_kst 1.144692e-01   p_cons 3.311538e-03   p_joint 6.065385e-03

Joint ci ratio: 1.141576e-01	ci left: 4.099848e-03	ci right 4.599772e-03	k: 1173	n:270000
Cons ci ratio: 1.206805e-01	ci left: 3.657611e-03	ci right 4.130914e-03	k: 1050	n:270000
KS ci ratio: 2.098065e-02	ci left: 1.132865e-01	ci right 1.156922e-01	k: 30911	n:270000
ITIH5   270000 perm   101 sec   (2666 perm/sec)   p_kst 1.144852e-01   p_cons 3.888889e-03   p_joint 4.344444e-03

Joint ci ratio: 1.198335e-01	ci left: 3.578933e-03	ci right 4.038574e-03	k: 1065	n:280000
Cons ci ratio: 1.176382e-01	ci left: 3.717563e-03	ci right 4.185654e-03	k: 1105	n:280000
KS ci ratio: 2.057972e-02	ci left: 1.135326e-01	ci right 1.158968e-01	k: 32119	n:280000
ITIH5   280000 perm   106 sec   (2639 perm/sec)   p_kst 1.147107e-01   p_cons 3.946429e-03   p_joint 3.803571e-03

Joint ci ratio: 1.226444e-01	ci left: 3.294994e-03	ci right 3.728815e-03	k: 1017	n:290000
Cons ci ratio: 1.158208e-01	ci left: 3.706536e-03	ci right 4.165534e-03	k: 1140	n:290000
KS ci ratio: 2.021669e-02	ci left: 1.136041e-01	ci right 1.159277e-01	k: 33281	n:290000
ITIH5   290000 perm   111 sec   (2614 perm/sec)   p_kst 1.147621e-01   p_cons 3.931034e-03   p_joint 3.506897e-03

Joint ci ratio: 9.857787e-02	ci left: 4.984770e-03	ci right 5.504858e-03	k: 1572	n:300000
Cons ci ratio: 1.142803e-01	ci left: 3.683341e-03	ci right 4.132992e-03	k: 1171	n:300000
KS ci ratio: 1.987156e-02	ci left: 1.136779e-01	ci right 1.159628e-01	k: 34445	n:300000
ITIH5   300000 perm   116 sec   (2584 perm/sec)   p_kst 1.148167e-01   p_cons 3.903333e-03   p_joint 5.240000e-03

Joint ci ratio: 9.716837e-02	ci left: 4.968724e-03	ci right 5.479303e-03	k: 1618	n:310000
Cons ci ratio: 1.124718e-01	ci left: 3.683628e-03	ci right 4.125725e-03	k: 1209	n:310000
KS ci ratio: 1.954166e-02	ci left: 1.137665e-01	ci right 1.160149e-01	k: 35615	n:310000
ITIH5   310000 perm   121 sec   (2560 perm/sec)   p_kst 1.148871e-01   p_cons 3.900000e-03   p_joint 5.219355e-03

Joint ci ratio: 9.846838e-02	ci left: 4.685378e-03	ci right 5.173654e-03	k: 1576	n:320000
Cons ci ratio: 1.105686e-01	ci left: 3.696105e-03	ci right 4.131704e-03	k: 1251	n:320000
KS ci ratio: 1.923979e-02	ci left: 1.137223e-01	ci right 1.159347e-01	k: 36744	n:320000
ITIH5   320000 perm   126 sec   (2536 perm/sec)   p_kst 1.148250e-01   p_cons 3.909375e-03   p_joint 4.925000e-03

Joint ci ratio: 1.005468e-01	ci left: 4.354246e-03	ci right 4.818156e-03	k: 1512	n:330000
Cons ci ratio: 1.090555e-01	ci left: 3.687249e-03	ci right 4.115475e-03	k: 1286	n:330000
KS ci ratio: 1.894159e-02	ci left: 1.137867e-01	ci right 1.159656e-01	k: 37908	n:330000
ITIH5   330000 perm   131 sec   (2512 perm/sec)   p_kst 1.148727e-01   p_cons 3.896970e-03   p_joint 4.581818e-03

Joint ci ratio: 1.003539e-01	ci left: 4.243372e-03	ci right 4.694550e-03	k: 1518	n:340000
Cons ci ratio: 1.076028e-01	ci left: 3.678951e-03	ci right 4.100162e-03	k: 1321	n:340000
KS ci ratio: 1.865739e-02	ci left: 1.138416e-01	ci right 1.159885e-01	k: 39070	n:340000
ITIH5   340000 perm   137 sec   (2488 perm/sec)   p_kst 1.149118e-01   p_cons 3.885294e-03   p_joint 4.464706e-03

Joint ci ratio: 9.980097e-02	ci left: 4.169480e-03	ci right 4.610216e-03	k: 1535	n:350000
Cons ci ratio: 1.060891e-01	ci left: 3.679508e-03	ci right 4.094486e-03	k: 1359	n:350000
KS ci ratio: 1.839000e-02	ci left: 1.138453e-01	ci right 1.159611e-01	k: 40215	n:350000
ITIH5   350000 perm   142 sec   (2464 perm/sec)   p_kst 1.149000e-01   p_cons 3.882857e-03   p_joint 4.385714e-03

Joint ci ratio: 9.019568e-02	ci left: 4.983948e-03	ci right 5.457403e-03	k: 1878	n:360000
Cons ci ratio: 1.151087e-01	ci left: 3.026223e-03	ci right 3.398512e-03	k: 1155	n:360000
KS ci ratio: 1.811770e-02	ci left: 1.140288e-01	ci right 1.161163e-01	k: 41425	n:360000
ITIH5   360000 perm   148 sec   (2440 perm/sec)   p_kst 1.150694e-01   p_cons 3.208333e-03   p_joint 5.216667e-03

Joint ci ratio: 9.088521e-02	ci left: 4.775261e-03	ci right 5.232544e-03	k: 1850	n:370000
Cons ci ratio: 1.132137e-01	ci left: 3.046830e-03	ci right 3.415072e-03	k: 1194	n:370000
KS ci ratio: 1.787255e-02	ci left: 1.140276e-01	ci right 1.160866e-01	k: 42570	n:370000
ITIH5   370000 perm   153 sec   (2419 perm/sec)   p_kst 1.150541e-01   p_cons 3.227027e-03   p_joint 5.000000e-03

Joint ci ratio: 8.590309e-02	ci left: 5.215804e-03	ci right 5.686522e-03	k: 2070	n:380000
Cons ci ratio: 1.115909e-01	ci left: 3.056167e-03	ci right 3.419894e-03	k: 1229	n:380000
KS ci ratio: 1.763412e-02	ci left: 1.140607e-01	ci right 1.160925e-01	k: 43728	n:380000
ITIH5   380000 perm   159 sec   (2397 perm/sec)   p_kst 1.150737e-01   p_cons 3.234211e-03   p_joint 5.447368e-03

Joint ci ratio: 8.492528e-02	ci left: 5.202512e-03	ci right 5.666421e-03	k: 2118	n:390000
Cons ci ratio: 1.102109e-01	ci left: 3.055086e-03	ci right 3.413896e-03	k: 1260	n:390000
KS ci ratio: 1.741793e-02	ci left: 1.139416e-01	ci right 1.159462e-01	k: 44827	n:390000
ITIH5   390000 perm   164 sec   (2376 perm/sec)   p_kst 1.149410e-01   p_cons 3.230769e-03   p_joint 5.430769e-03

Joint ci ratio: 8.363160e-02	ci left: 5.233975e-03	ci right 5.693233e-03	k: 2184	n:400000
Cons ci ratio: 1.087965e-01	ci left: 3.058949e-03	ci right 3.413307e-03	k: 1293	n:400000
KS ci ratio: 1.720399e-02	ci left: 1.138933e-01	ci right 1.158722e-01	k: 45952	n:400000
ITIH5   400000 perm   170 sec   (2355 perm/sec)   p_kst 1.148800e-01   p_cons 3.232500e-03   p_joint 5.460000e-03

Joint ci ratio: 8.250592e-02	ci left: 5.249621e-03	ci right 5.703753e-03	k: 2244	n:410000
Cons ci ratio: 1.078025e-01	ci left: 3.041290e-03	ci right 3.390179e-03	k: 1317	n:410000
KS ci ratio: 1.698247e-02	ci left: 1.140299e-01	ci right 1.159853e-01	k: 47152	n:410000
ITIH5   410000 perm   176 sec   (2335 perm/sec)   p_kst 1.150049e-01   p_cons 3.212195e-03   p_joint 5.473171e-03

Joint ci ratio: 8.201694e-02	ci left: 5.187586e-03	ci right 5.633565e-03	k: 2271	n:420000
Cons ci ratio: 1.065568e-01	ci left: 3.040710e-03	ci right 3.385248e-03	k: 1348	n:420000
KS ci ratio: 1.678361e-02	ci left: 1.139868e-01	ci right 1.159185e-01	k: 48279	n:420000
ITIH5   420000 perm   181 sec   (2315 perm/sec)   p_kst 1.149500e-01   p_cons 3.209524e-03   p_joint 5.407143e-03

Joint ci ratio: 8.187733e-02	ci left: 5.085157e-03	ci right 5.521550e-03	k: 2279	n:430000
Cons ci ratio: 1.056224e-01	ci left: 3.024327e-03	ci right 3.363817e-03	k: 1372	n:430000
KS ci ratio: 1.658494e-02	ci left: 1.140270e-01	ci right 1.159363e-01	k: 49441	n:430000
ITIH5   430000 perm   187 sec   (2295 perm/sec)   p_kst 1.149791e-01   p_cons 3.190698e-03   p_joint 5.300000e-03

Joint ci ratio: 8.087230e-02	ci left: 5.096496e-03	ci right 5.528240e-03	k: 2336	n:440000
Cons ci ratio: 1.045995e-01	ci left: 3.015342e-03	ci right 3.350344e-03	k: 1399	n:440000
KS ci ratio: 1.639133e-02	ci left: 1.140882e-01	ci right 1.159760e-01	k: 50613	n:440000
ITIH5   440000 perm   193 sec   (2276 perm/sec)   p_kst 1.150295e-01   p_cons 3.179545e-03   p_joint 5.309091e-03

Joint ci ratio: 7.553805e-02	ci left: 5.724103e-03	ci right 6.175627e-03	k: 2676	n:450000
Cons ci ratio: 1.034242e-01	ci left: 3.017596e-03	ci right 3.348852e-03	k: 1431	n:450000
KS ci ratio: 1.620117e-02	ci left: 1.141866e-01	ci right 1.160539e-01	k: 51803	n:450000
ITIH5   450000 perm   199 sec   (2256 perm/sec)   p_kst 1.151178e-01   p_cons 3.180000e-03   p_joint 5.946667e-03

Joint ci ratio: 7.470546e-02	ci left: 5.727651e-03	ci right 6.174259e-03	k: 2736	n:460000
Cons ci ratio: 1.024632e-01	ci left: 3.009179e-03	ci right 3.336258e-03	k: 1458	n:460000
KS ci ratio: 1.601969e-02	ci left: 1.142527e-01	ci right 1.160999e-01	k: 52980	n:460000
ITIH5   460000 perm   206 sec   (2238 perm/sec)   p_kst 1.151739e-01   p_cons 3.169565e-03   p_joint 5.947826e-03

Joint ci ratio: 7.408655e-02	ci left: 5.701835e-03	ci right 6.142587e-03	k: 2782	n:470000
Cons ci ratio: 1.013577e-01	ci left: 3.011504e-03	ci right 3.335094e-03	k: 1490	n:470000
KS ci ratio: 1.584302e-02	ci left: 1.143310e-01	ci right 1.161589e-01	k: 54164	n:470000
ITIH5   470000 perm   212 sec   (2218 perm/sec)   p_kst 1.152426e-01   p_cons 3.170213e-03   p_joint 5.919149e-03

Joint ci ratio: 7.485242e-02	ci left: 5.468528e-03	ci right 5.895805e-03	k: 2726	n:480000
Cons ci ratio: 1.003203e-01	ci left: 3.011719e-03	ci right 3.331824e-03	k: 1521	n:480000
KS ci ratio: 1.568216e-02	ci left: 1.142753e-01	ci right 1.160836e-01	k: 55285	n:480000
ITIH5   480000 perm   218 sec   (2200 perm/sec)   p_kst 1.151771e-01   p_cons 3.168750e-03   p_joint 5.679167e-03

Joint ci ratio: 7.440541e-02	ci left: 5.423011e-03	ci right 5.844092e-03	k: 2759	n:490000
Cons ci ratio: 9.909024e-02	ci left: 3.025874e-03	ci right 3.343311e-03	k: 1559	n:490000
KS ci ratio: 1.550886e-02	ci left: 1.144477e-01	ci right 1.162385e-01	k: 56517	n:490000
ITIH5   490000 perm   225 sec   (2181 perm/sec)   p_kst 1.153408e-01   p_cons 3.181633e-03   p_joint 5.630612e-03

Outputting figure to mutsig2_images.part000000000087/ITIH5.16_3022_490000_0.11534_0.0031816_0.0056306.png
                gene_name: ITIH5
               theta_stop: 0.099 
                    nperm: 490000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0030 
     ci_cons_bounds_right: 0.0033 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0058 

Current progress: 13 percent done.
ITGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
Cons ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
KS ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
ITGAM   10000 perm   2 sec   (4552 perm/sec)   p_kst 2.579000e-01   p_cons 2.438000e-01   p_joint 2.824000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAM.14_3582_10000_0.2579_0.2438_0.2824.png
                gene_name: ITGAM
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 15 percent done.
ITIH5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
Cons ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
ITIH5L   10000 perm   2 sec   (4684 perm/sec)   p_kst 6.990000e-02   p_cons 6.039000e-01   p_joint 3.115000e-01

Joint ci ratio: 6.755281e-02	ci left: 1.392105e-01	ci right 1.489932e-01	k: 2881	n:20000
Cons ci ratio: 2.178456e-02	ci left: 6.113749e-01	ci right 6.248907e-01	k: 12363	n:20000
KS ci ratio: 1.037668e-01	ci left: 6.313395e-02	ci right 7.009269e-02	k: 1331	n:20000
ITIH5L   20000 perm   5 sec   (4222 perm/sec)   p_kst 6.655000e-02   p_cons 6.181500e-01   p_joint 1.440500e-01

Joint ci ratio: 5.656328e-02	ci left: 1.340827e-01	ci right 1.419208e-01	k: 4139	n:30000
Cons ci ratio: 1.849379e-02	ci left: 5.940294e-01	ci right 6.051513e-01	k: 17988	n:30000
KS ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
ITIH5L   30000 perm   7 sec   (4055 perm/sec)   p_kst 7.010000e-02   p_cons 5.996000e-01   p_joint 1.379667e-01

Outputting figure to mutsig2_images.part000000000087/ITIH5L.14_3994_30000_0.0701_0.5996_0.13797.png
                gene_name: ITIH5L
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
ITIH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
Cons ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
KS ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
ITIH2   10000 perm   2 sec   (4770 perm/sec)   p_kst 4.602000e-01   p_cons 7.532000e-01   p_joint 5.533000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH2.13_2925_10000_0.4602_0.7532_0.5533.png
                gene_name: ITIH2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 18 percent done.
ITPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
ITPR1   10000 perm   3 sec   (3462 perm/sec)   p_kst 8.172000e-01   p_cons 3.346000e-01   p_joint 8.264000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR1.11_8517_10000_0.8172_0.3346_0.8264.png
                gene_name: ITPR1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 19 percent done.
ITSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
ITSN1   10000 perm   3 sec   (3938 perm/sec)   p_kst 2.943000e-01   p_cons 3.960000e-02   p_joint 9.370000e-02

Joint ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
Cons ci ratio: 1.286660e-01	ci left: 4.148978e-02	ci right 4.724363e-02	k: 886	n:20000
KS ci ratio: 4.363043e-02	ci left: 2.812337e-01	ci right 2.938281e-01	k: 5750	n:20000
ITSN1   20000 perm   6 sec   (3628 perm/sec)   p_kst 2.875000e-01   p_cons 4.430000e-02   p_joint 9.725000e-02

Joint ci ratio: 6.795845e-02	ci left: 9.643046e-02	ci right 1.032473e-01	k: 2994	n:30000
Cons ci ratio: 1.067247e-01	ci left: 4.073218e-02	ci right 4.535684e-02	k: 1290	n:30000
KS ci ratio: 3.561981e-02	ci left: 2.824489e-01	ci right 2.927256e-01	k: 8627	n:30000
ITSN1   30000 perm   9 sec   (3507 perm/sec)   p_kst 2.875667e-01   p_cons 4.300000e-02   p_joint 9.980000e-02

Joint ci ratio: 5.958037e-02	ci left: 9.473313e-02	ci right 1.005754e-01	k: 3905	n:40000
Cons ci ratio: 9.263300e-02	ci left: 4.086166e-02	ci right 4.485505e-02	k: 1713	n:40000
KS ci ratio: 3.078757e-02	ci left: 2.839386e-01	ci right 2.928421e-01	k: 11535	n:40000
ITSN1   40000 perm   12 sec   (3425 perm/sec)   p_kst 2.883750e-01   p_cons 4.282500e-02   p_joint 9.762500e-02

Outputting figure to mutsig2_images.part000000000087/ITSN1.10_5328_40000_0.28837_0.042825_0.097625.png
                gene_name: ITSN1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 21 percent done.
ITGAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
KS ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
ITGAE   10000 perm   2 sec   (4809 perm/sec)   p_kst 2.288000e-01   p_cons 4.526000e-01   p_joint 4.514000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAE.9_3664_10000_0.2288_0.4526_0.4514.png
                gene_name: ITGAE
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 23 percent done.
ITGAV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
ITGAV   10000 perm   2 sec   (4728 perm/sec)   p_kst 1.010000e-02   p_cons 2.900000e-02   p_joint 1.250000e-02

Joint ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
Cons ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
KS ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
ITGAV   20000 perm   5 sec   (4283 perm/sec)   p_kst 9.950000e-03   p_cons 2.755000e-02   p_joint 6.950000e-03

Joint ci ratio: 2.286735e-01	ci left: 8.590510e-03	ci right 1.083930e-02	k: 290	n:30000
Cons ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
KS ci ratio: 2.193492e-01	ci left: 9.377501e-03	ci right 1.171874e-02	k: 315	n:30000
ITGAV   30000 perm   7 sec   (4099 perm/sec)   p_kst 1.050000e-02   p_cons 2.830000e-02   p_joint 9.666667e-03

Joint ci ratio: 2.017461e-01	ci left: 8.406347e-03	ci right 1.031590e-02	k: 373	n:40000
Cons ci ratio: 1.146398e-01	ci left: 2.676963e-02	ci right 3.004931e-02	k: 1135	n:40000
KS ci ratio: 1.849973e-01	ci left: 1.007253e-02	ci right 1.214936e-02	k: 443	n:40000
ITGAV   40000 perm   10 sec   (3991 perm/sec)   p_kst 1.107500e-02   p_cons 2.837500e-02   p_joint 9.325000e-03

Joint ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
Cons ci ratio: 1.026116e-01	ci left: 2.690291e-02	ci right 2.983219e-02	k: 1417	n:50000
KS ci ratio: 1.659211e-01	ci left: 1.012342e-02	ci right 1.197401e-02	k: 551	n:50000
ITGAV   50000 perm   13 sec   (3916 perm/sec)   p_kst 1.102000e-02   p_cons 2.834000e-02   p_joint 8.220000e-03

Joint ci ratio: 1.948542e-01	ci left: 6.047004e-03	ci right 7.368056e-03	k: 401	n:60000
Cons ci ratio: 9.318212e-02	ci left: 2.731339e-02	ci right 2.999912e-02	k: 1718	n:60000
KS ci ratio: 1.501411e-01	ci left: 1.038937e-02	ci right 1.209173e-02	k: 673	n:60000
ITGAV   60000 perm   16 sec   (3836 perm/sec)   p_kst 1.121667e-02   p_cons 2.863333e-02   p_joint 6.683333e-03

Joint ci ratio: 2.002790e-01	ci left: 4.897685e-03	ci right 6.001062e-03	k: 380	n:70000
Cons ci ratio: 8.560216e-02	ci left: 2.783925e-02	ci right 3.034285e-02	k: 2035	n:70000
KS ci ratio: 1.384999e-01	ci left: 1.053015e-02	ci right 1.211075e-02	k: 791	n:70000
ITGAV   70000 perm   19 sec   (3769 perm/sec)   p_kst 1.130000e-02   p_cons 2.907143e-02   p_joint 5.428571e-03

Joint ci ratio: 1.896410e-01	ci left: 4.808621e-03	ci right 5.827760e-03	k: 424	n:80000
Cons ci ratio: 8.039183e-02	ci left: 2.770096e-02	ci right 3.003337e-02	k: 2308	n:80000
KS ci ratio: 1.302218e-01	ci left: 1.047019e-02	ci right 1.194058e-02	k: 895	n:80000
ITGAV   80000 perm   22 sec   (3710 perm/sec)   p_kst 1.118750e-02   p_cons 2.885000e-02   p_joint 5.300000e-03

Joint ci ratio: 1.797665e-01	ci left: 4.783010e-03	ci right 5.738194e-03	k: 472	n:90000
Cons ci ratio: 7.599968e-02	ci left: 2.761886e-02	ci right 2.981166e-02	k: 2583	n:90000
KS ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
ITGAV   90000 perm   25 sec   (3615 perm/sec)   p_kst 1.120000e-02   p_cons 2.870000e-02   p_joint 5.244444e-03

Joint ci ratio: 1.771982e-01	ci left: 4.438383e-03	ci right 5.310717e-03	k: 486	n:100000
Cons ci ratio: 7.234794e-02	ci left: 2.748720e-02	ci right 2.956027e-02	k: 2851	n:100000
KS ci ratio: 1.163690e-01	ci left: 1.056667e-02	ci right 1.188191e-02	k: 1121	n:100000
ITGAV   100000 perm   28 sec   (3564 perm/sec)   p_kst 1.121000e-02   p_cons 2.851000e-02   p_joint 4.860000e-03

Joint ci ratio: 1.374828e-01	ci left: 6.831756e-03	ci right 7.849024e-03	k: 806	n:110000
Cons ci ratio: 6.884792e-02	ci left: 2.764078e-02	ci right 2.962054e-02	k: 3148	n:110000
KS ci ratio: 1.110081e-01	ci left: 1.058648e-02	ci right 1.183950e-02	k: 1232	n:110000
ITGAV   110000 perm   31 sec   (3514 perm/sec)   p_kst 1.120000e-02   p_cons 2.861818e-02   p_joint 7.327273e-03

Joint ci ratio: 1.381296e-01	ci left: 6.205981e-03	ci right 7.134768e-03	k: 799	n:120000
Cons ci ratio: 6.581118e-02	ci left: 2.777078e-02	ci right 2.966876e-02	k: 3445	n:120000
KS ci ratio: 1.058885e-01	ci left: 1.069340e-02	ci right 1.189706e-02	k: 1354	n:120000
ITGAV   120000 perm   35 sec   (3465 perm/sec)   p_kst 1.128333e-02   p_cons 2.870833e-02   p_joint 6.658333e-03

Joint ci ratio: 1.369646e-01	ci left: 5.832507e-03	ci right 6.697431e-03	k: 813	n:130000
Cons ci ratio: 6.317856e-02	ci left: 2.785210e-02	ci right 2.967670e-02	k: 3738	n:130000
KS ci ratio: 1.013135e-01	ci left: 1.080749e-02	ci right 1.196831e-02	k: 1479	n:130000
ITGAV   130000 perm   38 sec   (3420 perm/sec)   p_kst 1.137692e-02   p_cons 2.875385e-02   p_joint 6.253846e-03

Joint ci ratio: 1.362399e-01	ci left: 5.477919e-03	ci right 6.285610e-03	k: 822	n:140000
Cons ci ratio: 6.101795e-02	ci left: 2.776125e-02	ci right 2.951549e-02	k: 4008	n:140000
KS ci ratio: 9.768539e-02	ci left: 1.081562e-02	ci right 1.193333e-02	k: 1591	n:140000
ITGAV   140000 perm   41 sec   (3376 perm/sec)   p_kst 1.136429e-02   p_cons 2.862857e-02   p_joint 5.871429e-03

Joint ci ratio: 1.206071e-01	ci left: 6.571368e-03	ci right 7.421190e-03	k: 1048	n:150000
Cons ci ratio: 5.889504e-02	ci left: 2.784114e-02	ci right 2.953714e-02	k: 4302	n:150000
KS ci ratio: 9.591242e-02	ci left: 1.048481e-02	ci right 1.154755e-02	k: 1651	n:150000
ITGAV   150000 perm   45 sec   (3332 perm/sec)   p_kst 1.100667e-02   p_cons 2.868000e-02   p_joint 6.986667e-03

Joint ci ratio: 1.258734e-01	ci left: 5.645606e-03	ci right 6.409960e-03	k: 963	n:160000
Cons ci ratio: 5.690290e-02	ci left: 2.798594e-02	ci right 2.963119e-02	k: 4608	n:160000
KS ci ratio: 9.268439e-02	ci left: 1.054353e-02	ci right 1.157430e-02	k: 1768	n:160000
ITGAV   160000 perm   49 sec   (3289 perm/sec)   p_kst 1.105000e-02   p_cons 2.880000e-02   p_joint 6.018750e-03

Joint ci ratio: 9.933949e-02	ci left: 8.625360e-03	ci right 9.532677e-03	k: 1542	n:170000
Cons ci ratio: 5.520429e-02	ci left: 2.801009e-02	ci right 2.960603e-02	k: 4896	n:170000
KS ci ratio: 9.027136e-02	ci left: 1.047509e-02	ci right 1.147110e-02	k: 1864	n:170000
ITGAV   170000 perm   52 sec   (3249 perm/sec)   p_kst 1.096471e-02   p_cons 2.880000e-02   p_joint 9.070588e-03

Outputting figure to mutsig2_images.part000000000087/ITGAV.9_3318_170000_0.010965_0.0288_0.0090706.png
                gene_name: ITGAV
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0095 

Current progress: 24 percent done.
ITSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
KS ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
ITSN2   10000 perm   2 sec   (4263 perm/sec)   p_kst 5.039000e-01   p_cons 7.728000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000087/ITSN2.9_5301_10000_0.5039_0.7728_0.7781.png
                gene_name: ITSN2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 26 percent done.
JARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
JARID2   10000 perm   2 sec   (4547 perm/sec)   p_kst 3.480000e-02   p_cons 9.051000e-01   p_joint 1.126000e-01

Joint ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
Cons ci ratio: 9.086160e-03	ci left: 8.988145e-01	ci right 9.070679e-01	k: 18060	n:20000
KS ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
JARID2   20000 perm   5 sec   (4144 perm/sec)   p_kst 3.720000e-02   p_cons 9.030000e-01   p_joint 7.685000e-02

Joint ci ratio: 7.299425e-02	ci left: 8.448980e-02	ci right 9.092363e-02	k: 2630	n:30000
Cons ci ratio: 7.433948e-03	ci left: 8.992229e-01	ci right 9.059656e-01	k: 27079	n:30000
KS ci ratio: 1.150301e-01	ci left: 3.511911e-02	ci right 3.943776e-02	k: 1117	n:30000
JARID2   30000 perm   8 sec   (3992 perm/sec)   p_kst 3.723333e-02   p_cons 9.026333e-01   p_joint 8.766667e-02

Joint ci ratio: 6.530844e-02	ci left: 7.992021e-02	ci right 8.534057e-02	k: 3304	n:40000
Cons ci ratio: 6.433549e-03	ci left: 8.998045e-01	ci right 9.056369e-01	k: 36110	n:40000
KS ci ratio: 9.848125e-02	ci left: 3.622063e-02	ci right 3.999680e-02	k: 1523	n:40000
JARID2   40000 perm   10 sec   (3899 perm/sec)   p_kst 3.807500e-02   p_cons 9.027500e-01   p_joint 8.260000e-02

Outputting figure to mutsig2_images.part000000000087/JARID2.9_3813_40000_0.038075_0.90275_0.0826.png
                gene_name: JARID2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 27 percent done.
ITIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
ITIH1   10000 perm   2 sec   (4814 perm/sec)   p_kst 5.967000e-01   p_cons 1.090000e-01   p_joint 2.859000e-01

Joint ci ratio: 4.396825e-02	ci left: 2.781048e-01	ci right 2.906579e-01	k: 5687	n:20000
Cons ci ratio: 7.937067e-02	ci left: 1.043692e-01	ci right 1.130449e-01	k: 2173	n:20000
KS ci ratio: 2.311490e-02	ci left: 5.829455e-01	ci right 5.966284e-01	k: 11796	n:20000
ITIH1   20000 perm   5 sec   (4382 perm/sec)   p_kst 5.898000e-01   p_cons 1.086500e-01   p_joint 2.843500e-01

Outputting figure to mutsig2_images.part000000000087/ITIH1.8_2824_20000_0.5898_0.10865_0.28435.png
                gene_name: ITIH1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
IWS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
Cons ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
IWS1   10000 perm   2 sec   (4258 perm/sec)   p_kst 3.756000e-01   p_cons 1.120000e-02   p_joint 6.770000e-02

Joint ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
Cons ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
KS ci ratio: 3.582674e-02	ci left: 3.676863e-01	ci right 3.811502e-01	k: 7488	n:20000
IWS1   20000 perm   5 sec   (4061 perm/sec)   p_kst 3.744000e-01   p_cons 1.205000e-02   p_joint 4.080000e-02

Joint ci ratio: 8.585932e-02	ci left: 6.217058e-02	ci right 6.778070e-02	k: 1948	n:30000
Cons ci ratio: 2.059352e-01	ci left: 1.070373e-02	ci right 1.319213e-02	k: 357	n:30000
KS ci ratio: 2.928048e-02	ci left: 3.684872e-01	ci right 3.794706e-01	k: 11219	n:30000
IWS1   30000 perm   8 sec   (3672 perm/sec)   p_kst 3.739667e-01   p_cons 1.190000e-02   p_joint 6.493333e-02

Joint ci ratio: 1.025366e-01	ci left: 3.343973e-02	ci right 3.707814e-02	k: 1409	n:40000
Cons ci ratio: 2.009341e-01	ci left: 8.477597e-03	ci right 1.039463e-02	k: 376	n:40000
KS ci ratio: 2.548536e-02	ci left: 3.668863e-01	ci right 3.763823e-01	k: 14865	n:40000
IWS1   40000 perm   11 sec   (3566 perm/sec)   p_kst 3.716250e-01   p_cons 9.400000e-03   p_joint 3.522500e-02

Joint ci ratio: 9.045576e-02	ci left: 3.456018e-02	ci right 3.785395e-02	k: 1809	n:50000
Cons ci ratio: 1.786245e-01	ci left: 8.687424e-03	ci right 1.041024e-02	k: 476	n:50000
KS ci ratio: 2.284710e-02	ci left: 3.663244e-01	ci right 3.748106e-01	k: 18528	n:50000
IWS1   50000 perm   14 sec   (3566 perm/sec)   p_kst 3.705600e-01   p_cons 9.520000e-03   p_joint 3.618000e-02

Joint ci ratio: 7.103684e-02	ci left: 4.658164e-02	ci right 5.002888e-02	k: 2897	n:60000
Cons ci ratio: 1.616979e-01	ci left: 8.915228e-03	ci right 1.049941e-02	k: 581	n:60000
KS ci ratio: 2.086450e-02	ci left: 3.665174e-01	ci right 3.742619e-01	k: 22223	n:60000
IWS1   60000 perm   17 sec   (3463 perm/sec)   p_kst 3.703833e-01   p_cons 9.683333e-03   p_joint 4.828333e-02

Joint ci ratio: 5.638559e-02	ci left: 6.276172e-02	ci right 6.641733e-02	k: 4520	n:70000
Cons ci ratio: 1.494812e-01	ci left: 9.000940e-03	ci right 1.046870e-02	k: 680	n:70000
KS ci ratio: 1.924773e-02	ci left: 3.684747e-01	ci right 3.756502e-01	k: 26044	n:70000
IWS1   70000 perm   20 sec   (3458 perm/sec)   p_kst 3.720571e-01   p_cons 9.714286e-03   p_joint 6.457143e-02

Joint ci ratio: 5.322938e-02	ci left: 6.179508e-02	ci right 6.518666e-02	k: 5078	n:80000
Cons ci ratio: 1.395814e-01	ci left: 9.080683e-03	ci right 1.045522e-02	k: 780	n:80000
KS ci ratio: 1.795784e-02	ci left: 3.699218e-01	ci right 3.766374e-01	k: 29862	n:80000
IWS1   80000 perm   23 sec   (3439 perm/sec)   p_kst 3.732750e-01   p_cons 9.750000e-03   p_joint 6.347500e-02

Joint ci ratio: 5.141591e-02	ci left: 5.910472e-02	ci right 6.223478e-02	k: 5459	n:90000
Cons ci ratio: 1.303773e-01	ci left: 9.295713e-03	ci right 1.060283e-02	k: 894	n:90000
KS ci ratio: 1.691790e-02	ci left: 3.704713e-01	ci right 3.768035e-01	k: 33627	n:90000
IWS1   90000 perm   27 sec   (3394 perm/sec)   p_kst 3.736333e-01   p_cons 9.933333e-03   p_joint 6.065556e-02

Joint ci ratio: 5.144728e-02	ci left: 5.345661e-02	ci right 5.628928e-02	k: 5486	n:100000
Cons ci ratio: 1.229055e-01	ci left: 9.450726e-03	ci right 1.069794e-02	k: 1006	n:100000
KS ci ratio: 1.606155e-02	ci left: 3.702909e-01	ci right 3.762965e-01	k: 37329	n:100000
IWS1   100000 perm   30 sec   (3369 perm/sec)   p_kst 3.732900e-01   p_cons 1.006000e-02   p_joint 5.486000e-02

Joint ci ratio: 5.127869e-02	ci left: 4.915042e-02	ci right 5.174607e-02	k: 5548	n:110000
Cons ci ratio: 1.181431e-01	ci left: 9.323333e-03	ci right 1.050272e-02	k: 1089	n:110000
KS ci ratio: 1.532361e-02	ci left: 3.701410e-01	ci right 3.758657e-01	k: 41030	n:110000
IWS1   110000 perm   33 sec   (3340 perm/sec)   p_kst 3.730000e-01   p_cons 9.900000e-03   p_joint 5.043636e-02

Joint ci ratio: 5.165124e-02	ci left: 4.461579e-02	ci right 4.698955e-02	k: 5495	n:120000
Cons ci ratio: 1.139925e-01	ci left: 9.201760e-03	ci right 1.032212e-02	k: 1170	n:120000
KS ci ratio: 1.464620e-02	ci left: 3.710615e-01	ci right 3.765446e-01	k: 44856	n:120000
IWS1   120000 perm   36 sec   (3309 perm/sec)   p_kst 3.738000e-01   p_cons 9.750000e-03   p_joint 4.579167e-02

Joint ci ratio: 4.958130e-02	ci left: 4.473831e-02	ci right 4.702046e-02	k: 5963	n:130000
Cons ci ratio: 1.092419e-01	ci left: 9.271621e-03	ci right 1.035041e-02	k: 1274	n:130000
KS ci ratio: 1.406193e-02	ci left: 3.714916e-01	ci right 3.767601e-01	k: 48636	n:130000
IWS1   130000 perm   40 sec   (3277 perm/sec)   p_kst 3.741231e-01   p_cons 9.800000e-03   p_joint 4.586923e-02

Joint ci ratio: 4.516608e-02	ci left: 4.990280e-02	ci right 5.221583e-02	k: 7147	n:140000
Cons ci ratio: 1.053098e-01	ci left: 9.283634e-03	ci right 1.032253e-02	k: 1371	n:140000
KS ci ratio: 1.355564e-02	ci left: 3.714074e-01	ci right 3.764835e-01	k: 52352	n:140000
IWS1   140000 perm   43 sec   (3232 perm/sec)   p_kst 3.739429e-01   p_cons 9.792857e-03   p_joint 5.105000e-02

Joint ci ratio: 4.625125e-02	ci left: 4.464204e-02	ci right 4.676223e-02	k: 6854	n:150000
Cons ci ratio: 1.024095e-01	ci left: 9.177685e-03	ci right 1.017474e-02	k: 1450	n:150000
KS ci ratio: 1.308677e-02	ci left: 3.718234e-01	ci right 3.767281e-01	k: 56141	n:150000
IWS1   150000 perm   47 sec   (3203 perm/sec)   p_kst 3.742733e-01   p_cons 9.666667e-03   p_joint 4.569333e-02

Joint ci ratio: 4.368865e-02	ci left: 4.685868e-02	ci right 4.895775e-02	k: 7664	n:160000
Cons ci ratio: 9.895549e-02	ci left: 9.231633e-03	ci right 1.019876e-02	k: 1553	n:160000
KS ci ratio: 1.266594e-02	ci left: 3.720964e-01	ci right 3.768456e-01	k: 59915	n:160000
IWS1   160000 perm   50 sec   (3177 perm/sec)   p_kst 3.744688e-01   p_cons 9.706250e-03   p_joint 4.790000e-02

Outputting figure to mutsig2_images.part000000000087/IWS1.8_2516_160000_0.37447_0.0097062_0.0479.png
                gene_name: IWS1
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.049 

Current progress: 31 percent done.
JAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
JAK1   10000 perm   2 sec   (4557 perm/sec)   p_kst 7.265000e-01   p_cons 8.069000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000087/JAK1.8_3561_10000_0.7265_0.8069_0.94.png
                gene_name: JAK1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 32 percent done.
ITGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
Cons ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
KS ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
ITGBL1   10000 perm   2 sec   (5390 perm/sec)   p_kst 9.039000e-01   p_cons 1.197000e-01   p_joint 3.813000e-01

Joint ci ratio: 3.758809e-02	ci left: 3.455770e-01	ci right 3.588660e-01	k: 7044	n:20000
Cons ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
KS ci ratio: 9.623666e-03	ci left: 8.880741e-01	ci right 8.967114e-01	k: 17849	n:20000
ITGBL1   20000 perm   4 sec   (4851 perm/sec)   p_kst 8.924500e-01   p_cons 1.199000e-01   p_joint 3.522000e-01

Outputting figure to mutsig2_images.part000000000087/ITGBL1.7_1529_20000_0.89245_0.1199_0.3522.png
                gene_name: ITGBL1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 34 percent done.
ITK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 1.084238e-02	ci left: 9.237903e-01	ci right 9.339582e-01	k: 9290	n:10000
ITK   10000 perm   2 sec   (5096 perm/sec)   p_kst 9.290000e-01   p_cons 3.421000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITK.7_1931_10000_0.929_0.3421_1.png
                gene_name: ITK
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
IVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
KS ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
IVL   10000 perm   2 sec   (5302 perm/sec)   p_kst 3.870000e-01   p_cons 9.803000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000087/IVL.7_1762_10000_0.387_0.9803_0.5606.png
                gene_name: IVL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 37 percent done.
JAKMIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KS ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
JAKMIP1   10000 perm   2 sec   (4945 perm/sec)   p_kst 7.420000e-02   p_cons 1.141000e-01   p_joint 7.310000e-02

Joint ci ratio: 1.185293e-01	ci left: 4.876885e-02	ci right 5.496225e-02	k: 1036	n:20000
Cons ci ratio: 7.691171e-02	ci left: 1.105115e-01	ci right 1.194007e-01	k: 2298	n:20000
KS ci ratio: 9.877348e-02	ci left: 6.938317e-02	ci right 7.664156e-02	k: 1459	n:20000
JAKMIP1   20000 perm   4 sec   (4490 perm/sec)   p_kst 7.295000e-02   p_cons 1.149000e-01   p_joint 5.180000e-02

Joint ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
Cons ci ratio: 6.285518e-02	ci left: 1.111477e-01	ci right 1.183937e-01	k: 3442	n:30000
KS ci ratio: 8.123043e-02	ci left: 6.909987e-02	ci right 7.498333e-02	k: 2160	n:30000
JAKMIP1   30000 perm   7 sec   (4312 perm/sec)   p_kst 7.200000e-02   p_cons 1.147333e-01   p_joint 5.256667e-02

Outputting figure to mutsig2_images.part000000000087/JAKMIP1.7_2651_30000_0.072_0.11473_0.052567.png
                gene_name: JAKMIP1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 39 percent done.
ITGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
ITGA5   10000 perm   2 sec   (4897 perm/sec)   p_kst 7.391000e-01   p_cons 5.183000e-01   p_joint 7.694000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA5.6_3270_10000_0.7391_0.5183_0.7694.png
                gene_name: ITGA5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 40 percent done.
ITGB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
Cons ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
KS ci ratio: 3.366282e-02	ci left: 5.657417e-01	ci right 5.852143e-01	k: 5755	n:10000
ITGB5   10000 perm   2 sec   (5349 perm/sec)   p_kst 5.755000e-01   p_cons 5.430000e-01   p_joint 6.774000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB5.6_2460_10000_0.5755_0.543_0.6774.png
                gene_name: ITGB5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
ITPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
Cons ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
KS ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
ITPR3   10000 perm   3 sec   (3756 perm/sec)   p_kst 6.204000e-01   p_cons 4.424000e-01   p_joint 8.915000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR3.6_8248_10000_0.6204_0.4424_0.8915.png
                gene_name: ITPR3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 44 percent done.
JAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
KS ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
JAM2   10000 perm   2 sec   (6105 perm/sec)   p_kst 5.440000e-01   p_cons 1.989000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000087/JAM2.6_937_10000_0.544_0.1989_0.5209.png
                gene_name: JAM2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 45 percent done.
JPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
Cons ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
JPH1   10000 perm   2 sec   (5662 perm/sec)   p_kst 1.256000e-01   p_cons 1.239000e-01   p_joint 1.684000e-01

Joint ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
Cons ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KS ci ratio: 7.758051e-02	ci left: 1.087912e-01	ci right 1.176216e-01	k: 2263	n:20000
JPH1   20000 perm   4 sec   (5095 perm/sec)   p_kst 1.131500e-01   p_cons 1.300000e-01   p_joint 8.720000e-02

Outputting figure to mutsig2_images.part000000000087/JPH1.6_2006_20000_0.11315_0.13_0.0872.png
                gene_name: JPH1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 47 percent done.
ITGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 5.877849e-03	ci left: 9.750383e-01	ci right 9.808786e-01	k: 9781	n:10000
KS ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
ITGA3   10000 perm   2 sec   (5083 perm/sec)   p_kst 5.940000e-02   p_cons 9.781000e-01   p_joint 1.498000e-01

Joint ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
Cons ci ratio: 4.069006e-03	ci left: 9.768645e-01	ci right 9.808946e-01	k: 19579	n:20000
KS ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
ITGA3   20000 perm   4 sec   (4594 perm/sec)   p_kst 6.055000e-02   p_cons 9.789500e-01   p_joint 1.435500e-01

Joint ci ratio: 5.865992e-02	ci left: 1.257529e-01	ci right 1.333856e-01	k: 3886	n:30000
Cons ci ratio: 3.367763e-03	ci left: 9.766567e-01	ci right 9.799832e-01	k: 29351	n:30000
KS ci ratio: 8.887230e-02	ci left: 5.818716e-02	ci right 6.363159e-02	k: 1826	n:30000
ITGA3   30000 perm   7 sec   (4428 perm/sec)   p_kst 6.086667e-02   p_cons 9.783667e-01   p_joint 1.295333e-01

Outputting figure to mutsig2_images.part000000000087/ITGA3.5_3416_30000_0.060867_0.97837_0.12953.png
                gene_name: ITGA3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 48 percent done.
ITGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
Cons ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KS ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
ITGA6   10000 perm   2 sec   (5091 perm/sec)   p_kst 3.662000e-01   p_cons 3.977000e-01   p_joint 5.201000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA6.5_3488_10000_0.3662_0.3977_0.5201.png
                gene_name: ITGA6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 50 percent done.
ITGB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
ITGB8   10000 perm   2 sec   (5142 perm/sec)   p_kst 7.605000e-01   p_cons 5.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB8.5_2366_10000_0.7605_0.5186_1.png
                gene_name: ITGB8
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ITM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
ITM2A   10000 perm   2 sec   (6109 perm/sec)   p_kst 4.158000e-01   p_cons 8.545000e-01   p_joint 8.133000e-01

Outputting figure to mutsig2_images.part000000000087/ITM2A.5_816_10000_0.4158_0.8545_0.8133.png
                gene_name: ITM2A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 53 percent done.
ITPKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
Cons ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
ITPKB   10000 perm   2 sec   (5132 perm/sec)   p_kst 3.396000e-01   p_cons 4.570000e-02   p_joint 1.134000e-01

Joint ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
Cons ci ratio: 1.238480e-01	ci left: 4.473862e-02	ci right 5.069376e-02	k: 953	n:20000
KS ci ratio: 3.943340e-02	ci left: 3.241301e-01	ci right 3.372192e-01	k: 6613	n:20000
ITPKB   20000 perm   4 sec   (4642 perm/sec)   p_kst 3.306500e-01   p_cons 4.765000e-02   p_joint 1.214500e-01

Joint ci ratio: 7.258673e-02	ci left: 8.537492e-02	ci right 9.183834e-02	k: 2657	n:30000
Cons ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
KS ci ratio: 3.222636e-02	ci left: 3.249447e-01	ci right 3.356215e-01	k: 9908	n:30000
ITPKB   30000 perm   7 sec   (4452 perm/sec)   p_kst 3.302667e-01   p_cons 4.750000e-02   p_joint 8.856667e-02

Joint ci ratio: 6.591911e-02	ci left: 7.854123e-02	ci right 8.391975e-02	k: 3248	n:40000
Cons ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
KS ci ratio: 2.686810e-02	ci left: 3.426329e-01	ci right 3.519893e-01	k: 13892	n:40000
ITPKB   40000 perm   9 sec   (4336 perm/sec)   p_kst 3.473000e-01   p_cons 4.765000e-02   p_joint 8.120000e-02

Outputting figure to mutsig2_images.part000000000087/ITPKB.5_2869_40000_0.3473_0.04765_0.0812.png
                gene_name: ITPKB
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 55 percent done.
IVNS1ABP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
IVNS1ABP   10000 perm   2 sec   (5200 perm/sec)   p_kst 3.650000e-01   p_cons 6.845000e-01   p_joint 5.353000e-01

Outputting figure to mutsig2_images.part000000000087/IVNS1ABP.5_1981_10000_0.365_0.6845_0.5353.png
                gene_name: IVNS1ABP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 56 percent done.
JAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
Cons ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
KS ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
JAK3   10000 perm   2 sec   (4879 perm/sec)   p_kst 5.758000e-01   p_cons 1.652000e-01   p_joint 3.543000e-01

Outputting figure to mutsig2_images.part000000000087/JAK3.5_3467_10000_0.5758_0.1652_0.3543.png
                gene_name: JAK3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
JAKMIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
KS ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
JAKMIP2   10000 perm   2 sec   (5404 perm/sec)   p_kst 9.273000e-01   p_cons 5.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAKMIP2.5_2513_10000_0.9273_0.5355_1.png
                gene_name: JAKMIP2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
JMY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
Cons ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
KS ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
JMY   10000 perm   2 sec   (4650 perm/sec)   p_kst 4.951000e-01   p_cons 3.381000e-01   p_joint 5.957000e-01

Outputting figure to mutsig2_images.part000000000087/JMY.5_3007_10000_0.4951_0.3381_0.5957.png
                gene_name: JMY
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 61 percent done.
JPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
Cons ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
JPH2   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.871000e-01   p_cons 2.623000e-01   p_joint 6.501000e-01

Outputting figure to mutsig2_images.part000000000087/JPH2.5_2126_10000_0.7871_0.2623_0.6501.png
                gene_name: JPH2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 63 percent done.
ITGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
ITGB3   10000 perm   2 sec   (5458 perm/sec)   p_kst 7.499000e-01   p_cons 2.810000e-02   p_joint 2.182000e-01

Joint ci ratio: 4.681108e-02	ci left: 2.534847e-01	ci right 2.656853e-01	k: 5191	n:20000
Cons ci ratio: 1.487662e-01	ci left: 3.104924e-02	ci right 3.608756e-02	k: 670	n:20000
KS ci ratio: 1.673106e-02	ci left: 7.267599e-01	ci right 7.390723e-01	k: 14659	n:20000
ITGB3   20000 perm   4 sec   (4910 perm/sec)   p_kst 7.329500e-01   p_cons 3.350000e-02   p_joint 2.595500e-01

Joint ci ratio: 4.567822e-02	ci left: 1.925782e-01	ci right 2.016138e-01	k: 5912	n:30000
Cons ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
KS ci ratio: 1.359638e-02	ci left: 7.297655e-01	ci right 7.397890e-01	k: 22044	n:30000
ITGB3   30000 perm   6 sec   (4668 perm/sec)   p_kst 7.348000e-01   p_cons 2.920000e-02   p_joint 1.970667e-01

Joint ci ratio: 4.315129e-02	ci left: 1.673218e-01	ci right 1.747261e-01	k: 6840	n:40000
Cons ci ratio: 1.107375e-01	ci left: 2.869052e-02	ci right 3.207811e-02	k: 1214	n:40000
KS ci ratio: 1.185869e-02	ci left: 7.276554e-01	ci right 7.363609e-01	k: 29281	n:40000
ITGB3   40000 perm   9 sec   (4524 perm/sec)   p_kst 7.320250e-01   p_cons 3.035000e-02   p_joint 1.710000e-01

Joint ci ratio: 3.912467e-02	ci left: 1.639188e-01	ci right 1.704799e-01	k: 8359	n:50000
Cons ci ratio: 9.947834e-02	ci left: 2.861968e-02	ci right 3.163520e-02	k: 1505	n:50000
KS ci ratio: 1.058148e-02	ci left: 7.290587e-01	ci right 7.368342e-01	k: 36648	n:50000
ITGB3   50000 perm   11 sec   (4410 perm/sec)   p_kst 7.329600e-01   p_cons 3.010000e-02   p_joint 1.671800e-01

Outputting figure to mutsig2_images.part000000000087/ITGB3.4_2427_50000_0.73296_0.0301_0.16718.png
                gene_name: ITGB3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 65 percent done.
ITGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
ITGB4   10000 perm   2 sec   (4421 perm/sec)   p_kst 9.480000e-02   p_cons 2.210000e-02   p_joint 1.230000e-02

Joint ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
Cons ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
KS ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
ITGB4   20000 perm   5 sec   (4013 perm/sec)   p_kst 9.045000e-02   p_cons 2.740000e-02   p_joint 2.385000e-02

Joint ci ratio: 1.389777e-01	ci left: 2.403537e-02	ci right 2.765724e-02	k: 774	n:30000
Cons ci ratio: 1.348374e-01	ci left: 2.554970e-02	ci right 2.927591e-02	k: 821	n:30000
KS ci ratio: 7.180401e-02	ci left: 8.711266e-02	ci right 9.363359e-02	k: 2710	n:30000
ITGB4   30000 perm   8 sec   (3875 perm/sec)   p_kst 9.033333e-02   p_cons 2.736667e-02   p_joint 2.580000e-02

Joint ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
Cons ci ratio: 1.169378e-01	ci left: 2.572495e-02	ci right 2.894417e-02	k: 1092	n:40000
KS ci ratio: 6.265869e-02	ci left: 8.632555e-02	ci right 9.193427e-02	k: 3564	n:40000
ITGB4   40000 perm   11 sec   (3797 perm/sec)   p_kst 8.910000e-02   p_cons 2.730000e-02   p_joint 2.965000e-02

Joint ci ratio: 9.648066e-02	ci left: 3.041594e-02	ci right 3.351871e-02	k: 1597	n:50000
Cons ci ratio: 1.044845e-01	ci left: 2.594762e-02	ci right 2.882760e-02	k: 1368	n:50000
KS ci ratio: 5.637247e-02	ci left: 8.568878e-02	ci right 9.067916e-02	k: 4408	n:50000
ITGB4   50000 perm   13 sec   (3729 perm/sec)   p_kst 8.816000e-02   p_cons 2.736000e-02   p_joint 3.194000e-02

Joint ci ratio: 1.092669e-01	ci left: 1.985137e-02	ci right 2.216196e-02	k: 1259	n:60000
Cons ci ratio: 9.528563e-02	ci left: 2.612463e-02	ci right 2.875468e-02	k: 1645	n:60000
KS ci ratio: 5.031066e-02	ci left: 8.956697e-02	ci right 9.420592e-02	k: 5512	n:60000
ITGB4   60000 perm   16 sec   (3667 perm/sec)   p_kst 9.186667e-02   p_cons 2.741667e-02   p_joint 2.098333e-02

Joint ci ratio: 1.101486e-01	ci left: 1.679168e-02	ci right 1.876287e-02	k: 1243	n:70000
Cons ci ratio: 8.843868e-02	ci left: 2.609133e-02	ci right 2.851950e-02	k: 1910	n:70000
KS ci ratio: 4.662991e-02	ci left: 8.955772e-02	ci right 9.384762e-02	k: 6418	n:70000
ITGB4   70000 perm   19 sec   (3610 perm/sec)   p_kst 9.168571e-02   p_cons 2.728571e-02   p_joint 1.775714e-02

Joint ci ratio: 1.026573e-01	ci left: 1.698031e-02	ci right 1.882989e-02	k: 1431	n:80000
Cons ci ratio: 8.292225e-02	ci left: 2.604698e-02	ci right 2.831248e-02	k: 2173	n:80000
KS ci ratio: 4.492147e-02	ci left: 8.495679e-02	ci right 8.887323e-02	k: 6952	n:80000
ITGB4   80000 perm   22 sec   (3557 perm/sec)   p_kst 8.690000e-02   p_cons 2.716250e-02   p_joint 1.788750e-02

Joint ci ratio: 9.149212e-02	ci left: 1.907357e-02	ci right 2.091311e-02	k: 1798	n:90000
Cons ci ratio: 7.868987e-02	ci left: 2.577641e-02	ci right 2.789868e-02	k: 2414	n:90000
KS ci ratio: 4.221989e-02	ci left: 8.556265e-02	ci right 8.926399e-02	k: 7866	n:90000
ITGB4   90000 perm   26 sec   (3506 perm/sec)   p_kst 8.740000e-02   p_cons 2.682222e-02   p_joint 1.997778e-02

Outputting figure to mutsig2_images.part000000000087/ITGB4.4_5788_90000_0.0874_0.026822_0.019978.png
                gene_name: ITGB4
               theta_stop: 0.091 
                    nperm: 90000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 66 percent done.
ITLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
KS ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
ITLN1   10000 perm   2 sec   (5922 perm/sec)   p_kst 4.588000e-01   p_cons 6.447000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000087/ITLN1.4_970_10000_0.4588_0.6447_0.5864.png
                gene_name: ITLN1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
JAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
Cons ci ratio: 5.684256e-02	ci left: 3.130436e-01	ci right 3.314601e-01	k: 3222	n:10000
KS ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
JAG1   10000 perm   2 sec   (5022 perm/sec)   p_kst 8.480000e-01   p_cons 3.222000e-01   p_joint 7.058000e-01

Outputting figure to mutsig2_images.part000000000087/JAG1.4_3761_10000_0.848_0.3222_0.7058.png
                gene_name: JAG1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 69 percent done.
JAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.680890e-02	ci left: 6.720653e-01	ci right 6.904290e-01	k: 6813	n:10000
KS ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
JAK2   10000 perm   2 sec   (5115 perm/sec)   p_kst 9.422000e-01   p_cons 6.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAK2.4_3491_10000_0.9422_0.6813_1.png
                gene_name: JAK2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
JMJD7-PLA2G4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
JMJD7-PLA2G4B   10000 perm   2 sec   (5088 perm/sec)   p_kst 4.594000e-01   p_cons 3.174000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000087/JMJD7-PLA2G4B.4_3139_10000_0.4594_0.3174_0.6024.png
                gene_name: JMJD7-PLA2G4B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 73 percent done.
JPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
JPH3   10000 perm   2 sec   (5165 perm/sec)   p_kst 3.000000e-03   p_cons 2.569000e-01   p_joint 2.630000e-02

Joint ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
Cons ci ratio: 4.706817e-02	ci left: 2.514010e-01	ci right 2.635696e-01	k: 5149	n:20000
KS ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
JPH3   20000 perm   4 sec   (4790 perm/sec)   p_kst 2.500000e-03   p_cons 2.574500e-01   p_joint 1.610000e-02

Joint ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
Cons ci ratio: 3.823445e-02	ci left: 2.544801e-01	ci right 2.644332e-01	k: 7783	n:30000
KS ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
JPH3   30000 perm   6 sec   (4624 perm/sec)   p_kst 2.300000e-03   p_cons 2.594333e-01   p_joint 1.236667e-02

Joint ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
Cons ci ratio: 3.292070e-02	ci left: 2.573724e-01	ci right 2.660122e-01	k: 10467	n:40000
KS ci ratio: 3.995980e-01	ci left: 1.921929e-03	ci right 2.902547e-03	k: 95	n:40000
JPH3   40000 perm   9 sec   (4496 perm/sec)   p_kst 2.375000e-03   p_cons 2.616750e-01   p_joint 1.297500e-02

Joint ci ratio: 1.615392e-01	ci left: 1.069909e-02	ci right 1.259825e-02	k: 581	n:50000
Cons ci ratio: 2.943300e-02	ci left: 2.579904e-01	ci right 2.657173e-01	k: 13092	n:50000
KS ci ratio: 3.473983e-01	ci left: 2.099648e-03	ci right 2.999660e-03	k: 126	n:50000
JPH3   50000 perm   11 sec   (4399 perm/sec)   p_kst 2.520000e-03   p_cons 2.618400e-01   p_joint 1.162000e-02

Joint ci ratio: 1.709897e-01	ci left: 7.940509e-03	ci right 9.440928e-03	k: 520	n:60000
Cons ci ratio: 2.691217e-02	ci left: 2.577049e-01	ci right 2.647515e-01	k: 15673	n:60000
KS ci ratio: 3.207373e-01	ci left: 2.085661e-03	ci right 2.896993e-03	k: 148	n:60000
JPH3   60000 perm   14 sec   (4311 perm/sec)   p_kst 2.466667e-03   p_cons 2.612167e-01   p_joint 8.666667e-03

Joint ci ratio: 1.654324e-01	ci left: 7.298584e-03	ci right 8.628403e-03	k: 556	n:70000
Cons ci ratio: 2.497715e-02	ci left: 2.570238e-01	ci right 2.635390e-01	k: 18219	n:70000
KS ci ratio: 2.942704e-01	ci left: 2.156911e-03	ci right 2.913838e-03	k: 176	n:70000
JPH3   70000 perm   17 sec   (4228 perm/sec)   p_kst 2.514286e-03   p_cons 2.602714e-01   p_joint 7.942857e-03

Joint ci ratio: 1.637485e-01	ci left: 6.529866e-03	ci right 7.706304e-03	k: 568	n:80000
Cons ci ratio: 2.403860e-02	ci left: 2.464670e-01	ci right 2.524762e-01	k: 19957	n:80000
KS ci ratio: 2.734320e-01	ci left: 2.212422e-03	ci right 2.924417e-03	k: 204	n:80000
JPH3   80000 perm   19 sec   (4153 perm/sec)   p_kst 2.550000e-03   p_cons 2.494625e-01   p_joint 7.100000e-03

Joint ci ratio: 1.571423e-01	ci left: 6.326862e-03	ci right 7.416398e-03	k: 617	n:90000
Cons ci ratio: 2.267374e-02	ci left: 2.464762e-01	ci right 2.521399e-01	k: 22437	n:90000
KS ci ratio: 2.532254e-01	ci left: 2.319489e-03	ci right 3.002085e-03	k: 238	n:90000
JPH3   90000 perm   22 sec   (4081 perm/sec)   p_kst 2.644444e-03   p_cons 2.493000e-01   p_joint 6.855556e-03

Joint ci ratio: 1.513895e-01	ci left: 6.155607e-03	ci right 7.173324e-03	k: 665	n:100000
Cons ci ratio: 2.150280e-02	ci left: 2.467505e-01	ci right 2.521240e-01	k: 24943	n:100000
KS ci ratio: 2.409395e-01	ci left: 2.322069e-03	ci right 2.967318e-03	k: 263	n:100000
JPH3   100000 perm   25 sec   (4009 perm/sec)   p_kst 2.630000e-03   p_cons 2.494300e-01   p_joint 6.650000e-03

Joint ci ratio: 1.452048e-01	ci left: 6.103707e-03	ci right 7.068039e-03	k: 723	n:110000
Cons ci ratio: 2.051128e-02	ci left: 2.467093e-01	ci right 2.518311e-01	k: 27419	n:110000
KS ci ratio: 2.283123e-01	ci left: 2.367684e-03	ci right 2.986274e-03	k: 293	n:110000
JPH3   110000 perm   28 sec   (3944 perm/sec)   p_kst 2.663636e-03   p_cons 2.492636e-01   p_joint 6.572727e-03

Joint ci ratio: 1.403545e-01	ci left: 6.004862e-03	ci right 6.919235e-03	k: 774	n:120000
Cons ci ratio: 1.965807e-02	ci left: 2.464390e-01	ci right 2.513398e-01	k: 29866	n:120000
KS ci ratio: 2.198772e-01	ci left: 2.351285e-03	ci right 2.939827e-03	k: 316	n:120000
JPH3   120000 perm   31 sec   (3882 perm/sec)   p_kst 2.633333e-03   p_cons 2.488833e-01   p_joint 6.450000e-03

Joint ci ratio: 9.648299e-02	ci left: 1.193313e-02	ci right 1.315029e-02	k: 1629	n:130000
Cons ci ratio: 1.888761e-02	ci left: 2.465207e-01	ci right 2.512289e-01	k: 32353	n:130000
KS ci ratio: 1.969360e-01	ci left: 2.739247e-03	ci right 3.344795e-03	k: 394	n:130000
JPH3   130000 perm   34 sec   (3822 perm/sec)   p_kst 3.030769e-03   p_cons 2.488692e-01   p_joint 1.253077e-02

Joint ci ratio: 9.279644e-02	ci left: 1.200133e-02	ci right 1.317613e-02	k: 1761	n:140000
Cons ci ratio: 1.819735e-02	ci left: 2.466724e-01	ci right 2.512095e-01	k: 34851	n:140000
KS ci ratio: 1.900829e-01	ci left: 2.740696e-03	ci right 3.323046e-03	k: 423	n:140000
JPH3   140000 perm   37 sec   (3765 perm/sec)   p_kst 3.021429e-03   p_cons 2.489357e-01   p_joint 1.257857e-02

Joint ci ratio: 9.674485e-02	ci left: 1.030259e-02	ci right 1.135644e-02	k: 1623	n:150000
Cons ci ratio: 1.759865e-02	ci left: 2.463612e-01	ci right 2.507419e-01	k: 37282	n:150000
KS ci ratio: 1.841027e-01	ci left: 2.735907e-03	ci right 3.296909e-03	k: 451	n:150000
JPH3   150000 perm   40 sec   (3708 perm/sec)   p_kst 3.006667e-03   p_cons 2.485467e-01   p_joint 1.082000e-02

Joint ci ratio: 8.788608e-02	ci left: 1.174119e-02	ci right 1.282659e-02	k: 1964	n:160000
Cons ci ratio: 1.702231e-02	ci left: 2.468140e-01	ci right 2.510576e-01	k: 39829	n:160000
KS ci ratio: 1.795942e-01	ci left: 2.702116e-03	ci right 3.241145e-03	k: 474	n:160000
JPH3   160000 perm   44 sec   (3655 perm/sec)   p_kst 2.962500e-03   p_cons 2.489312e-01   p_joint 1.227500e-02

Joint ci ratio: 8.926060e-02	ci left: 1.071666e-02	ci right 1.172364e-02	k: 1906	n:170000
Cons ci ratio: 1.651442e-02	ci left: 2.468695e-01	ci right 2.509862e-01	k: 42317	n:170000
KS ci ratio: 1.734901e-01	ci left: 2.734336e-03	ci right 3.259311e-03	k: 508	n:170000
JPH3   170000 perm   47 sec   (3591 perm/sec)   p_kst 2.988235e-03   p_cons 2.489235e-01   p_joint 1.121176e-02

Joint ci ratio: 9.211299e-02	ci left: 9.502043e-03	ci right 1.042495e-02	k: 1792	n:180000
Cons ci ratio: 1.606114e-02	ci left: 2.466490e-01	ci right 2.506480e-01	k: 44756	n:180000
KS ci ratio: 1.698619e-01	ci left: 2.699395e-03	ci right 3.205713e-03	k: 530	n:180000
JPH3   180000 perm   51 sec   (3541 perm/sec)   p_kst 2.944444e-03   p_cons 2.486444e-01   p_joint 9.955556e-03

Joint ci ratio: 8.205765e-02	ci left: 1.138115e-02	ci right 1.236014e-02	k: 2254	n:190000
Cons ci ratio: 1.564588e-02	ci left: 2.463901e-01	ci right 2.502807e-01	k: 47183	n:190000
KS ci ratio: 1.648162e-01	ci left: 2.723735e-03	ci right 3.217938e-03	k: 563	n:190000
JPH3   190000 perm   54 sec   (3493 perm/sec)   p_kst 2.963158e-03   p_cons 2.483316e-01   p_joint 1.186316e-02

Joint ci ratio: 9.469690e-02	ci left: 8.092535e-03	ci right 8.901808e-03	k: 1698	n:200000
Cons ci ratio: 1.524040e-02	ci left: 2.466671e-01	ci right 2.504602e-01	k: 49712	n:200000
KS ci ratio: 1.611452e-01	ci left: 2.712245e-03	ci right 3.192341e-03	k: 589	n:200000
JPH3   200000 perm   58 sec   (3447 perm/sec)   p_kst 2.945000e-03   p_cons 2.485600e-01   p_joint 8.490000e-03

Joint ci ratio: 9.519756e-02	ci left: 7.628059e-03	ci right 8.395138e-03	k: 1681	n:210000
Cons ci ratio: 1.486679e-02	ci left: 2.468713e-01	ci right 2.505737e-01	k: 52231	n:210000
KS ci ratio: 1.575809e-01	ci left: 2.706534e-03	ci right 3.174020e-03	k: 616	n:210000
JPH3   210000 perm   62 sec   (3402 perm/sec)   p_kst 2.933333e-03   p_cons 2.487190e-01   p_joint 8.004762e-03

Joint ci ratio: 9.798262e-02	ci left: 6.868679e-03	ci right 7.580761e-03	k: 1588	n:220000
Cons ci ratio: 1.453333e-02	ci left: 2.466998e-01	ci right 2.503159e-01	k: 54671	n:220000
KS ci ratio: 1.549687e-01	ci left: 2.675228e-03	ci right 3.128935e-03	k: 637	n:220000
JPH3   220000 perm   66 sec   (3358 perm/sec)   p_kst 2.895455e-03   p_cons 2.485045e-01   p_joint 7.218182e-03

Joint ci ratio: 9.900699e-02	ci left: 6.434266e-03	ci right 7.108689e-03	k: 1556	n:230000
Cons ci ratio: 1.420629e-02	ci left: 2.469388e-01	ci right 2.504763e-01	k: 57202	n:230000
KS ci ratio: 1.506590e-01	ci left: 2.713637e-03	ci right 3.159905e-03	k: 674	n:230000
JPH3   230000 perm   69 sec   (3315 perm/sec)   p_kst 2.930435e-03   p_cons 2.487043e-01   p_joint 6.765217e-03

Joint ci ratio: 9.791933e-02	ci left: 6.308394e-03	ci right 6.961940e-03	k: 1591	n:240000
Cons ci ratio: 1.390610e-02	ci left: 2.470048e-01	ci right 2.504679e-01	k: 59696	n:240000
KS ci ratio: 1.464836e-01	ci left: 2.757033e-03	ci right 3.196773e-03	k: 713	n:240000
JPH3   240000 perm   73 sec   (3274 perm/sec)   p_kst 2.970833e-03   p_cons 2.487333e-01   p_joint 6.629167e-03

Joint ci ratio: 9.716752e-02	ci left: 6.153594e-03	ci right 6.785929e-03	k: 1616	n:250000
Cons ci ratio: 1.363731e-02	ci left: 2.467072e-01	ci right 2.500987e-01	k: 62100	n:250000
KS ci ratio: 1.416035e-01	ci left: 2.839554e-03	ci right 3.276093e-03	k: 763	n:250000
JPH3   250000 perm   77 sec   (3234 perm/sec)   p_kst 3.052000e-03   p_cons 2.484000e-01   p_joint 6.464000e-03

Joint ci ratio: 9.081316e-02	ci left: 6.792126e-03	ci right 7.442011e-03	k: 1849	n:260000
Cons ci ratio: 1.337180e-02	ci left: 2.467592e-01	ci right 2.500848e-01	k: 64589	n:260000
KS ci ratio: 1.390786e-01	ci left: 2.834251e-03	ci right 3.261562e-03	k: 791	n:260000
JPH3   260000 perm   81 sec   (3195 perm/sec)   p_kst 3.042308e-03   p_cons 2.484192e-01   p_joint 7.111538e-03

Joint ci ratio: 9.206088e-02	ci left: 6.363169e-03	ci right 6.980825e-03	k: 1800	n:270000
Cons ci ratio: 1.312955e-02	ci left: 2.465715e-01	ci right 2.498339e-01	k: 67014	n:270000
KS ci ratio: 1.357736e-01	ci left: 2.868760e-03	ci right 3.290166e-03	k: 830	n:270000
JPH3   270000 perm   86 sec   (3156 perm/sec)   p_kst 3.074074e-03   p_cons 2.482000e-01   p_joint 6.666667e-03

Joint ci ratio: 9.166301e-02	ci left: 6.191718e-03	ci right 6.789994e-03	k: 1816	n:280000
Cons ci ratio: 1.288434e-02	ci left: 2.468503e-01	ci right 2.500549e-01	k: 69566	n:280000
KS ci ratio: 1.334652e-01	ci left: 2.866388e-03	ci right 3.279718e-03	k: 859	n:280000
JPH3   280000 perm   90 sec   (3117 perm/sec)   p_kst 3.067857e-03   p_cons 2.484500e-01   p_joint 6.485714e-03

Joint ci ratio: 9.197948e-02	ci left: 5.937746e-03	ci right 6.513568e-03	k: 1804	n:290000
Cons ci ratio: 1.266276e-02	ci left: 2.468041e-01	ci right 2.499526e-01	k: 72029	n:290000
KS ci ratio: 1.314934e-01	ci left: 2.854229e-03	ci right 3.259251e-03	k: 885	n:290000
JPH3   290000 perm   94 sec   (3076 perm/sec)   p_kst 3.051724e-03   p_cons 2.483759e-01   p_joint 6.220690e-03

Joint ci ratio: 9.056149e-02	ci left: 5.925482e-03	ci right 6.490787e-03	k: 1861	n:300000
Cons ci ratio: 1.244346e-02	ci left: 2.470242e-01	ci right 2.501206e-01	k: 74571	n:300000
KS ci ratio: 1.286897e-01	ci left: 2.884861e-03	ci right 3.284834e-03	k: 924	n:300000
JPH3   300000 perm   99 sec   (3041 perm/sec)   p_kst 3.080000e-03   p_cons 2.485700e-01   p_joint 6.203333e-03

Joint ci ratio: 9.008516e-02	ci left: 5.797379e-03	ci right 6.347400e-03	k: 1881	n:310000
Cons ci ratio: 1.223771e-02	ci left: 2.471533e-01	ci right 2.501997e-01	k: 77089	n:310000
KS ci ratio: 1.262553e-01	ci left: 2.904228e-03	ci right 3.298700e-03	k: 960	n:310000
JPH3   310000 perm   103 sec   (3008 perm/sec)   p_kst 3.096774e-03   p_cons 2.486742e-01   p_joint 6.067742e-03

Joint ci ratio: 8.891332e-02	ci left: 5.768960e-03	ci right 6.308794e-03	k: 1931	n:320000
Cons ci ratio: 1.204495e-02	ci left: 2.471781e-01	ci right 2.501765e-01	k: 79576	n:320000
KS ci ratio: 1.249638e-01	ci left: 2.874004e-03	ci right 3.260082e-03	k: 980	n:320000
JPH3   320000 perm   108 sec   (2976 perm/sec)   p_kst 3.062500e-03   p_cons 2.486750e-01   p_joint 6.034375e-03

Joint ci ratio: 8.848490e-02	ci left: 5.650426e-03	ci right 6.176489e-03	k: 1950	n:330000
Cons ci ratio: 1.186257e-02	ci left: 2.471533e-01	ci right 2.501057e-01	k: 82047	n:330000
KS ci ratio: 1.230959e-01	ci left: 2.875002e-03	ci right 3.255020e-03	k: 1010	n:330000
JPH3   330000 perm   112 sec   (2944 perm/sec)   p_kst 3.060606e-03   p_cons 2.486273e-01   p_joint 5.909091e-03

Joint ci ratio: 9.349117e-02	ci left: 4.903539e-03	ci right 5.387307e-03	k: 1748	n:340000
Cons ci ratio: 1.168537e-02	ci left: 2.472213e-01	ci right 2.501300e-01	k: 84549	n:340000
KS ci ratio: 1.247203e-01	ci left: 2.716329e-03	ci right 3.080461e-03	k: 984	n:340000
JPH3   340000 perm   117 sec   (2914 perm/sec)   p_kst 2.894118e-03   p_cons 2.486735e-01   p_joint 5.141176e-03

Joint ci ratio: 9.747008e-02	ci left: 4.375716e-03	ci right 4.826832e-03	k: 1609	n:350000
Cons ci ratio: 1.151818e-02	ci left: 2.472116e-01	ci right 2.500783e-01	k: 87025	n:350000
KS ci ratio: 1.228632e-01	ci left: 2.721780e-03	ci right 3.080814e-03	k: 1014	n:350000
JPH3   350000 perm   121 sec   (2884 perm/sec)   p_kst 2.897143e-03   p_cons 2.486429e-01   p_joint 4.597143e-03

Joint ci ratio: 8.959845e-02	ci left: 5.051839e-03	ci right 5.528399e-03	k: 1903	n:360000
Cons ci ratio: 1.136007e-02	ci left: 2.471334e-01	ci right 2.499596e-01	k: 89476	n:360000
KS ci ratio: 1.213197e-01	ci left: 2.716191e-03	ci right 3.069664e-03	k: 1040	n:360000
JPH3   360000 perm   126 sec   (2854 perm/sec)   p_kst 2.888889e-03   p_cons 2.485444e-01   p_joint 5.286111e-03

Joint ci ratio: 8.544153e-02	ci left: 5.414981e-03	ci right 5.900918e-03	k: 2092	n:370000
Cons ci ratio: 1.119857e-02	ci left: 2.473833e-01	ci right 2.501719e-01	k: 92047	n:370000
KS ci ratio: 1.196083e-01	ci left: 2.721419e-03	ci right 3.070223e-03	k: 1070	n:370000
JPH3   370000 perm   131 sec   (2824 perm/sec)   p_kst 2.891892e-03   p_cons 2.487757e-01   p_joint 5.654054e-03

Joint ci ratio: 8.504033e-02	ci left: 5.323981e-03	ci right 5.799396e-03	k: 2112	n:380000
Cons ci ratio: 1.104696e-02	ci left: 2.475127e-01	ci right 2.502648e-01	k: 94577	n:380000
KS ci ratio: 1.179673e-01	ci left: 2.726404e-03	ci right 3.070719e-03	k: 1100	n:380000
JPH3   380000 perm   136 sec   (2793 perm/sec)   p_kst 2.894737e-03   p_cons 2.488868e-01   p_joint 5.557895e-03

Joint ci ratio: 8.537202e-02	ci left: 5.147297e-03	ci right 5.608817e-03	k: 2096	n:390000
Cons ci ratio: 1.090224e-02	ci left: 2.476050e-01	ci right 2.503218e-01	k: 97095	n:390000
KS ci ratio: 1.164955e-01	ci left: 2.726186e-03	ci right 3.065882e-03	k: 1128	n:390000
JPH3   390000 perm   141 sec   (2764 perm/sec)   p_kst 2.892308e-03   p_cons 2.489615e-01   p_joint 5.374359e-03

Joint ci ratio: 8.491094e-02	ci left: 5.074882e-03	ci right 5.527329e-03	k: 2119	n:400000
Cons ci ratio: 1.076003e-02	ci left: 2.477977e-01	ci right 2.504809e-01	k: 99655	n:400000
KS ci ratio: 1.154784e-01	ci left: 2.706579e-03	ci right 3.040687e-03	k: 1148	n:400000
JPH3   400000 perm   146 sec   (2736 perm/sec)   p_kst 2.870000e-03   p_cons 2.491375e-01   p_joint 5.297500e-03

Joint ci ratio: 8.406373e-02	ci left: 5.053764e-03	ci right 5.499613e-03	k: 2162	n:410000
Cons ci ratio: 1.063018e-02	ci left: 2.477378e-01	ci right 2.503877e-01	k: 102115	n:410000
KS ci ratio: 1.139511e-01	ci left: 2.714006e-03	ci right 3.044301e-03	k: 1179	n:410000
JPH3   410000 perm   151 sec   (2707 perm/sec)   p_kst 2.875610e-03   p_cons 2.490610e-01   p_joint 5.273171e-03

Joint ci ratio: 8.385498e-02	ci left: 4.959067e-03	ci right 5.395421e-03	k: 2173	n:420000
Cons ci ratio: 1.050238e-02	ci left: 2.477712e-01	ci right 2.503894e-01	k: 104613	n:420000
KS ci ratio: 1.125295e-01	ci left: 2.718792e-03	ci right 3.045268e-03	k: 1209	n:420000
JPH3   420000 perm   157 sec   (2680 perm/sec)   p_kst 2.878571e-03   p_cons 2.490786e-01   p_joint 5.173810e-03

Joint ci ratio: 8.387945e-02	ci left: 4.841451e-03	ci right 5.267586e-03	k: 2172	n:430000
Cons ci ratio: 1.037759e-02	ci left: 2.478566e-01	ci right 2.504445e-01	k: 107134	n:430000
KS ci ratio: 1.110252e-01	ci left: 2.730164e-03	ci right 3.053336e-03	k: 1242	n:430000
JPH3   430000 perm   162 sec   (2652 perm/sec)   p_kst 2.888372e-03   p_cons 2.491488e-01   p_joint 5.051163e-03

Joint ci ratio: 8.279990e-02	ci left: 4.858265e-03	ci right 5.280111e-03	k: 2229	n:440000
Cons ci ratio: 1.025902e-02	ci left: 2.478703e-01	ci right 2.504285e-01	k: 109625	n:440000
KS ci ratio: 1.097955e-01	ci left: 2.729994e-03	ci right 3.049335e-03	k: 1270	n:440000
JPH3   440000 perm   168 sec   (2625 perm/sec)   p_kst 2.886364e-03   p_cons 2.491477e-01   p_joint 5.065909e-03

Joint ci ratio: 8.997891e-02	ci left: 4.010962e-03	ci right 4.391021e-03	k: 1889	n:450000
Cons ci ratio: 9.872879e-03	ci left: 2.581553e-01	ci right 2.607189e-01	k: 116746	n:450000
KS ci ratio: 1.083136e-01	ci left: 2.744985e-03	ci right 3.061469e-03	k: 1305	n:450000
JPH3   450000 perm   173 sec   (2598 perm/sec)   p_kst 2.900000e-03   p_cons 2.594356e-01   p_joint 4.197778e-03

Joint ci ratio: 8.400996e-02	ci left: 4.512903e-03	ci right 4.910767e-03	k: 2166	n:460000
Cons ci ratio: 9.765439e-03	ci left: 2.581512e-01	ci right 2.606866e-01	k: 119332	n:460000
KS ci ratio: 1.069701e-01	ci left: 2.755120e-03	ci right 3.068585e-03	k: 1338	n:460000
JPH3   460000 perm   179 sec   (2573 perm/sec)   p_kst 2.908696e-03   p_cons 2.594174e-01   p_joint 4.708696e-03

Joint ci ratio: 8.332170e-02	ci left: 4.491874e-03	ci right 4.884483e-03	k: 2202	n:470000
Cons ci ratio: 9.663197e-03	ci left: 2.580772e-01	ci right 2.605853e-01	k: 121885	n:470000
KS ci ratio: 1.062203e-01	ci left: 2.735846e-03	ci right 3.044800e-03	k: 1357	n:470000
JPH3   470000 perm   184 sec   (2548 perm/sec)   p_kst 2.887234e-03   p_cons 2.593298e-01   p_joint 4.685106e-03

Joint ci ratio: 8.257601e-02	ci left: 4.479897e-03	ci right 4.867786e-03	k: 2242	n:480000
Cons ci ratio: 9.558190e-03	ci left: 2.582437e-01	ci right 2.607259e-01	k: 124552	n:480000
KS ci ratio: 1.049145e-01	ci left: 2.747814e-03	ci right 3.054069e-03	k: 1391	n:480000
JPH3   480000 perm   190 sec   (2524 perm/sec)   p_kst 2.897917e-03   p_cons 2.594833e-01   p_joint 4.670833e-03

Joint ci ratio: 8.250609e-02	ci left: 4.396458e-03	ci right 4.776784e-03	k: 2246	n:490000
Cons ci ratio: 9.458188e-03	ci left: 2.583362e-01	ci right 2.607932e-01	k: 127186	n:490000
KS ci ratio: 1.040221e-01	ci left: 2.739435e-03	ci right 3.042001e-03	k: 1415	n:490000
JPH3   490000 perm   196 sec   (2500 perm/sec)   p_kst 2.887755e-03   p_cons 2.595633e-01   p_joint 4.583673e-03

Joint ci ratio: 8.153155e-02	ci left: 4.414315e-03	ci right 4.791461e-03	k: 2300	n:500000
Cons ci ratio: 9.363843e-03	ci left: 2.583193e-01	ci right 2.607515e-01	k: 129767	n:500000
KS ci ratio: 1.029373e-01	ci left: 2.743094e-03	ci right 3.042713e-03	k: 1445	n:500000
JPH3   500000 perm   202 sec   (2477 perm/sec)   p_kst 2.890000e-03   p_cons 2.595340e-01   p_joint 4.600000e-03

Joint ci ratio: 8.329913e-02	ci left: 4.143380e-03	ci right 4.505424e-03	k: 2204	n:510000
Cons ci ratio: 9.271366e-03	ci left: 2.583404e-01	ci right 2.607486e-01	k: 132367	n:510000
KS ci ratio: 1.018165e-01	ci left: 2.750446e-03	ci right 3.047402e-03	k: 1477	n:510000
JPH3   510000 perm   208 sec   (2454 perm/sec)   p_kst 2.896078e-03   p_cons 2.595431e-01   p_joint 4.321569e-03

Joint ci ratio: 8.266499e-02	ci left: 4.127726e-03	ci right 4.485524e-03	k: 2238	n:520000
Cons ci ratio: 9.183507e-03	ci left: 2.582801e-01	ci right 2.606649e-01	k: 134925	n:520000
KS ci ratio: 1.008993e-01	ci left: 2.748160e-03	ci right 3.042037e-03	k: 1504	n:520000
JPH3   520000 perm   214 sec   (2433 perm/sec)   p_kst 2.892308e-03   p_cons 2.594712e-01   p_joint 4.303846e-03

Joint ci ratio: 8.166708e-02	ci left: 4.151487e-03	ci right 4.506795e-03	k: 2293	n:530000
Cons ci ratio: 9.095552e-03	ci left: 2.583296e-01	ci right 2.606919e-01	k: 137540	n:530000
KS ci ratio: 9.987570e-02	ci left: 2.753330e-03	ci right 3.044599e-03	k: 1535	n:530000
JPH3   530000 perm   220 sec   (2412 perm/sec)   p_kst 2.896226e-03   p_cons 2.595094e-01   p_joint 4.326415e-03

Outputting figure to mutsig2_images.part000000000087/JPH3.4_2267_530000_0.0028962_0.25951_0.0043264.png
                gene_name: JPH3
               theta_stop: 0.100 
                    nperm: 530000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0028 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.0043 
     ci_joint_bounds_left: 0.0042 
    ci_joint_bounds_right: 0.0045 

Current progress: 74 percent done.
ITGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
KS ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
ITGB1   10000 perm   2 sec   (5650 perm/sec)   p_kst 5.382000e-01   p_cons 3.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB1.3_2695_10000_0.5382_0.3628_1.png
                gene_name: ITGB1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ITGB1BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
Cons ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
KS ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
ITGB1BP2   10000 perm   2 sec   (6177 perm/sec)   p_kst 4.980000e-02   p_cons 8.725000e-01   p_joint 1.874000e-01

Joint ci ratio: 6.369996e-02	ci left: 1.541050e-01	ci right 1.642943e-01	k: 3183	n:20000
Cons ci ratio: 1.055412e-02	ci left: 8.687122e-01	ci right 8.779790e-01	k: 17468	n:20000
KS ci ratio: 1.181691e-01	ci left: 4.906042e-02	ci right 5.527060e-02	k: 1042	n:20000
ITGB1BP2   20000 perm   4 sec   (5455 perm/sec)   p_kst 5.210000e-02   p_cons 8.734000e-01   p_joint 1.591500e-01

Joint ci ratio: 5.570764e-02	ci left: 1.377060e-01	ci right 1.456302e-01	k: 4249	n:30000
Cons ci ratio: 8.514242e-03	ci left: 8.722512e-01	ci right 8.797425e-01	k: 26281	n:30000
KS ci ratio: 9.666480e-02	ci left: 4.944925e-02	ci right 5.450463e-02	k: 1558	n:30000
ITGB1BP2   30000 perm   6 sec   (5184 perm/sec)   p_kst 5.193333e-02   p_cons 8.760333e-01   p_joint 1.416333e-01

Outputting figure to mutsig2_images.part000000000087/ITGB1BP2.3_1088_30000_0.051933_0.87603_0.14163.png
                gene_name: ITGB1BP2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 77 percent done.
IVD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
IVD   10000 perm   2 sec   (6331 perm/sec)   p_kst 7.269000e-01   p_cons 8.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/IVD.3_1329_10000_0.7269_0.8412_1.png
                gene_name: IVD
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
JAKMIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.286347e-02	ci left: 5.774761e-01	ci right 5.968731e-01	k: 5872	n:10000
KS ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
JAKMIP3   10000 perm   2 sec   (5463 perm/sec)   p_kst 5.681000e-01   p_cons 5.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAKMIP3.3_2619_10000_0.5681_0.5872_1.png
                gene_name: JAKMIP3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
JHDM1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
Cons ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
KS ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
JHDM1D   10000 perm   2 sec   (5482 perm/sec)   p_kst 2.870000e-01   p_cons 1.339000e-01   p_joint 3.574000e-01

Outputting figure to mutsig2_images.part000000000087/JHDM1D.3_2906_10000_0.287_0.1339_0.3574.png
                gene_name: JHDM1D
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 82 percent done.
JPH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
Cons ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
KS ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
JPH4   10000 perm   2 sec   (5929 perm/sec)   p_kst 5.367000e-01   p_cons 4.115000e-01   p_joint 5.794000e-01

Outputting figure to mutsig2_images.part000000000087/JPH4.3_1907_10000_0.5367_0.4115_0.5794.png
                gene_name: JPH4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 84 percent done.
ITGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
Cons ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
KS ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
ITGA7   10000 perm   2 sec   (5489 perm/sec)   p_kst 6.527000e-01   p_cons 9.130000e-02   p_joint 5.834000e-01

Joint ci ratio: 5.205532e-02	ci left: 2.151169e-01	ci right 2.266644e-01	k: 4417	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 2.056076e-02	ci left: 6.383728e-01	ci right 6.516850e-01	k: 12901	n:20000
ITGA7   20000 perm   4 sec   (4882 perm/sec)   p_kst 6.450500e-01   p_cons 8.970000e-02   p_joint 2.208500e-01

Outputting figure to mutsig2_images.part000000000087/ITGA7.2_3785_20000_0.64505_0.0897_0.22085.png
                gene_name: ITGA7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 85 percent done.
ITGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
Cons ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
KS ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
ITGA9   10000 perm   2 sec   (5981 perm/sec)   p_kst 5.427000e-01   p_cons 5.118000e-01   p_joint 5.607000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA9.2_3220_10000_0.5427_0.5118_0.5607.png
                gene_name: ITGA9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 87 percent done.
ITGB1BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
KS ci ratio: 2.757738e-02	ci left: 6.595781e-01	ci right 6.781235e-01	k: 6689	n:10000
ITGB1BP3   10000 perm   1 sec   (6950 perm/sec)   p_kst 6.689000e-01   p_cons 2.424000e-01   p_joint 3.087000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB1BP3.2_721_10000_0.6689_0.2424_0.3087.png
                gene_name: ITGB1BP3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 89 percent done.
ITGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 5.343254e-02	ci left: 3.404477e-01	ci right 3.592399e-01	k: 3498	n:10000
ITGB2   10000 perm   2 sec   (5900 perm/sec)   p_kst 3.498000e-01   p_cons 9.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB2.2_2370_10000_0.3498_0.9204_1.png
                gene_name: ITGB2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ITIH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
Cons ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
ITIH3   10000 perm   2 sec   (5667 perm/sec)   p_kst 5.414000e-01   p_cons 8.106000e-01   p_joint 6.815000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH3.2_2761_10000_0.5414_0.8106_0.6815.png
                gene_name: ITIH3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 92 percent done.
ITIH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
Cons ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
KS ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
ITIH4   10000 perm   2 sec   (5797 perm/sec)   p_kst 4.892000e-01   p_cons 3.483000e-01   p_joint 8.727000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH4.2_2889_10000_0.4892_0.3483_0.8727.png
                gene_name: ITIH4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 94 percent done.
ITPRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
Cons ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
KS ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
ITPRIP   10000 perm   2 sec   (5777 perm/sec)   p_kst 9.464000e-01   p_cons 2.289000e-01   p_joint 6.959000e-01

Outputting figure to mutsig2_images.part000000000087/ITPRIP.2_1648_10000_0.9464_0.2289_0.6959.png
                gene_name: ITPRIP
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 95 percent done.
JAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
KS ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
JAG2   10000 perm   2 sec   (4943 perm/sec)   p_kst 9.302000e-01   p_cons 5.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAG2.2_3821_10000_0.9302_0.5825_1.png
                gene_name: JAG2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
JRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
KS ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
JRK   10000 perm   2 sec   (6522 perm/sec)   p_kst 8.562000e-01   p_cons 5.637000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JRK.2_1807_10000_0.8562_0.5637_1.png
                gene_name: JRK
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
JRKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.607020e-03	ci left: 9.897211e-01	ci right 9.933838e-01	k: 9917	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
JRKL   10000 perm   2 sec   (6393 perm/sec)   p_kst 3.955000e-01   p_cons 8.837000e-01   p_joint 9.917000e-01

Outputting figure to mutsig2_images.part000000000087/JRKL.2_1579_10000_0.3955_0.8837_0.9917.png
                gene_name: JRKL
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000087
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 87 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 4422089: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000088> was used as the working directory.
Started at Wed Oct 24 17:57:24 2012
Results reported at Wed Oct 24 18:07:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000088.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000088.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 88  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000088.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    675.32 sec.
    Max Memory :      5302 MB
    Max Swap   :      7781 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
88
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 88
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 88: processing genes 7872 - 7961
Calculating significance of each gene.
Using projection method.
7872	JUB	5.973724e-01
7873	JUN	1
7874	JUNB	1
7875	JUND	1
7876	JUP	9.902141e-01
7877	KAAG1	2.337416e-01
7878	KAL1	5.069033e-01
7879	KALRN	9.728764e-01
7880	KANK1	8.851023e-01
7881	KANK2	9.696285e-01
7882	KANK3	7.935933e-01
7883	KANK4	8.568552e-01
7884	KARS	9.178048e-01
7885	KAT2A	1
7886	KAT2B	2.761486e-01
7887	KAT5	9.802309e-01
7888	KATNA1	8.968612e-01
7889	KATNAL1	6.451227e-01
7890	KATNAL2	8.859597e-01
7891	KATNB1	1
7892	KAZ	5.507584e-01
7893	KAZALD1	6.252734e-01
7894	KBTBD10	6.747957e-01
7895	KBTBD12	1
7896	KBTBD2	6.727065e-01
7897	KBTBD3	1
7898	KBTBD4	8.893038e-01
7899	KBTBD5	5.228407e-01
7900	KBTBD6	9.792715e-01
7901	KBTBD7	8.432941e-01
7902	KBTBD8	6.919116e-01
7903	KCMF1	3.582755e-01
7904	KCNA1	9.473622e-01
7905	KCNA10	7.975166e-01
7906	KCNA2	1
7907	KCNA3	9.120442e-01
7908	KCNA4	4.505214e-01
7909	KCNA5	9.013241e-01
7910	KCNA6	9.274835e-01
7911	KCNA7	4.551667e-01
7912	KCNAB1	1
7913	KCNAB2	6.039566e-01
7914	KCNAB3	7.479153e-01
7915	KCNB1	9.824411e-01
7916	KCNB2	5.209058e-01
7917	KCNC1	1.140882e-01
7918	KCNC2	9.718889e-02
7919	KCNC3	8.942750e-01
7920	KCNC4	9.647395e-01
7921	KCND1	9.533196e-01
7922	KCND2	8.005568e-01
7923	KCND3	4.663415e-01
7924	KCNE1	4.201775e-01
7925	KCNE1L	5.520536e-02
7926	KCNE2	1
7927	KCNE3	1
7928	KCNE4	6.170380e-01
7929	KCNF1	5.370957e-01
7930	KCNG1	1
7931	KCNG2	5.851225e-01
7932	KCNG3	5.921919e-01
7933	KCNG4	8.677740e-01
7934	KCNH1	9.557500e-01
7935	KCNH2	6.234639e-02
7936	KCNH3	8.031319e-01
7937	KCNH4	8.519405e-01
7938	KCNH5	9.898391e-01
7939	KCNH6	9.105408e-01
7940	KCNH7	9.937011e-01
7941	KCNH8	6.697214e-03
7942	KCNIP1	3.760708e-01
7943	KCNIP2	1
7944	KCNIP3	1
7945	KCNIP4	1
7946	KCNJ1	6.526255e-01
7947	KCNJ10	6.769997e-01
7948	KCNJ11	8.301537e-01
7949	KCNJ12	9.390077e-01
7950	KCNJ13	9.006680e-01
7951	KCNJ14	1
7952	KCNJ15	4.578481e-01
7953	KCNJ16	7.361172e-01
7954	KCNJ2	1.161681e-01
7955	KCNJ3	6.124285e-01
7956	KCNJ4	1
7957	KCNJ5	1
7958	KCNJ6	4.867024e-01
7959	KCNJ8	3.814543e-01
7960	KCNJ9	1
7961	KCNK1	1
Done

Running MutSig 2:
Scatter job 88: processing genes 7872 - 7961
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KALRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KS ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
KALRN   10000 perm   3 sec   (2868 perm/sec)   p_kst 9.520000e-01   p_cons 2.310000e-02   p_joint 1.808000e-01

Joint ci ratio: 6.381919e-02	ci left: 1.536115e-01	ci right 1.637879e-01	k: 3173	n:20000
Cons ci ratio: 1.773270e-01	ci left: 2.173197e-02	ci right 2.600799e-02	k: 476	n:20000
KS ci ratio: 6.168589e-03	ci left: 9.498209e-01	ci right 9.557465e-01	k: 19057	n:20000
KALRN   20000 perm   9 sec   (2136 perm/sec)   p_kst 9.528500e-01   p_cons 2.380000e-02   p_joint 1.586500e-01

Joint ci ratio: 6.111387e-02	ci left: 1.169022e-01	ci right 1.243048e-01	k: 3617	n:30000
Cons ci ratio: 1.453614e-01	ci left: 2.194399e-02	ci right 2.541576e-02	k: 709	n:30000
KS ci ratio: 5.075923e-03	ci left: 9.496568e-01	ci right 9.545219e-01	k: 28564	n:30000
KALRN   30000 perm   13 sec   (2250 perm/sec)   p_kst 9.521333e-01   p_cons 2.363333e-02   p_joint 1.205667e-01

Joint ci ratio: 5.521638e-02	ci left: 1.088017e-01	ci right 1.150047e-01	k: 4475	n:40000
Cons ci ratio: 1.266197e-01	ci left: 2.191651e-02	ci right 2.490323e-02	k: 935	n:40000
KS ci ratio: 4.414015e-03	ci left: 9.496044e-01	ci right 9.538297e-01	k: 38070	n:40000
KALRN   40000 perm   17 sec   (2303 perm/sec)   p_kst 9.517500e-01   p_cons 2.337500e-02   p_joint 1.118750e-01

Joint ci ratio: 4.943190e-02	ci left: 1.089516e-01	ci right 1.144936e-01	k: 5585	n:50000
Cons ci ratio: 1.125160e-01	ci left: 2.236495e-02	ci right 2.505074e-02	k: 1184	n:50000
KS ci ratio: 3.964579e-03	ci left: 9.494381e-01	ci right 9.532293e-01	k: 47568	n:50000
KALRN   50000 perm   21 sec   (2330 perm/sec)   p_kst 9.513600e-01   p_cons 2.368000e-02   p_joint 1.117000e-01

Joint ci ratio: 4.459939e-02	ci left: 1.115169e-01	ci right 1.166205e-01	k: 6843	n:60000
Cons ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
KS ci ratio: 3.620743e-03	ci left: 9.495644e-01	ci right 9.530251e-01	k: 57079	n:60000
KALRN   60000 perm   26 sec   (2342 perm/sec)   p_kst 9.513167e-01   p_cons 2.410000e-02   p_joint 1.140500e-01

Joint ci ratio: 3.996295e-02	ci left: 1.184227e-01	ci right 1.232659e-01	k: 8458	n:70000
Cons ci ratio: 9.357383e-02	ci left: 2.331152e-02	ci right 2.561384e-02	k: 1711	n:70000
KS ci ratio: 3.353727e-03	ci left: 9.496505e-01	ci right 9.528548e-01	k: 66589	n:70000
KALRN   70000 perm   30 sec   (2340 perm/sec)   p_kst 9.512714e-01   p_cons 2.444286e-02   p_joint 1.208286e-01

Outputting figure to mutsig2_images.part000000000088/KALRN.28_9357_70000_0.95127_0.024443_0.12083.png
                gene_name: KALRN
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 2 percent done.
KANK4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
Cons ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
KS ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
KANK4   10000 perm   2 sec   (4423 perm/sec)   p_kst 2.964000e-01   p_cons 2.966000e-01   p_joint 3.603000e-01

Outputting figure to mutsig2_images.part000000000088/KANK4.27_3024_10000_0.2964_0.2966_0.3603.png
                gene_name: KANK4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 3 percent done.
KCNH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
Cons ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KCNH8   10000 perm   2 sec   (4004 perm/sec)   p_kst 7.340000e-02   p_cons 1.101000e-01   p_joint 1.098000e-01

Joint ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
Cons ci ratio: 7.924803e-02	ci left: 1.046639e-01	ci right 1.133501e-01	k: 2179	n:20000
KS ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
KCNH8   20000 perm   5 sec   (3669 perm/sec)   p_kst 6.985000e-02   p_cons 1.089500e-01   p_joint 1.035500e-01

Joint ci ratio: 7.297905e-02	ci left: 8.452258e-02	ci right 9.095751e-02	k: 2631	n:30000
Cons ci ratio: 6.381170e-02	ci left: 1.081566e-01	ci right 1.153188e-01	k: 3351	n:30000
KS ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
KCNH8   30000 perm   8 sec   (3560 perm/sec)   p_kst 7.003333e-02   p_cons 1.117000e-01   p_joint 8.770000e-02

Outputting figure to mutsig2_images.part000000000088/KCNH8.20_3388_30000_0.070033_0.1117_0.0877.png
                gene_name: KCNH8
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 5 percent done.
KCNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
Cons ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
KS ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
KCNB2   10000 perm   2 sec   (4512 perm/sec)   p_kst 6.932000e-01   p_cons 3.770000e-01   p_joint 8.343000e-01

Outputting figure to mutsig2_images.part000000000088/KCNB2.18_2744_10000_0.6932_0.377_0.8343.png
                gene_name: KCNB2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 7 percent done.
KCNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
KCNA4   10000 perm   2 sec   (4901 perm/sec)   p_kst 1.234000e-01   p_cons 5.151000e-01   p_joint 1.957000e-01

Joint ci ratio: 6.045521e-02	ci left: 1.684228e-01	ci right 1.789722e-01	k: 3473	n:20000
Cons ci ratio: 2.679241e-02	ci left: 5.099974e-01	ci right 5.238976e-01	k: 10339	n:20000
KS ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
KCNA4   20000 perm   5 sec   (4415 perm/sec)   p_kst 1.267500e-01   p_cons 5.169500e-01   p_joint 1.736500e-01

Outputting figure to mutsig2_images.part000000000088/KCNA4.17_1966_20000_0.12675_0.51695_0.17365.png
                gene_name: KCNA4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
KCNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
KCNB1   10000 perm   2 sec   (4751 perm/sec)   p_kst 4.189000e-01   p_cons 9.743000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000088/KCNB1.16_2585_10000_0.4189_0.9743_0.5927.png
                gene_name: KCNB1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 10 percent done.
KCNH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
KS ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
KCNH7   10000 perm   2 sec   (4437 perm/sec)   p_kst 9.451000e-01   p_cons 5.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH7.16_3721_10000_0.9451_0.5966_1.png
                gene_name: KCNH7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
KCNH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
KS ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
KCNH1   10000 perm   2 sec   (4389 perm/sec)   p_kst 8.920000e-02   p_cons 2.225000e-01   p_joint 1.952000e-01

Joint ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
Cons ci ratio: 5.337546e-02	ci left: 2.066992e-01	ci right 2.180846e-01	k: 4247	n:20000
KS ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
KCNH1   20000 perm   5 sec   (3996 perm/sec)   p_kst 8.885000e-02   p_cons 2.123500e-01   p_joint 1.155500e-01

Outputting figure to mutsig2_images.part000000000088/KCNH1.15_3014_20000_0.08885_0.21235_0.11555.png
                gene_name: KCNH1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
KCNJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
Cons ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
KCNJ3   10000 perm   2 sec   (4745 perm/sec)   p_kst 6.777000e-01   p_cons 7.826000e-01   p_joint 8.738000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ3.15_1518_10000_0.6777_0.7826_0.8738.png
                gene_name: KCNJ3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 15 percent done.
KCNJ12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
KS ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KCNJ12   10000 perm   2 sec   (5358 perm/sec)   p_kst 1.857000e-01   p_cons 4.820000e-01   p_joint 2.178000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ12.14_1306_10000_0.1857_0.482_0.2178.png
                gene_name: KCNJ12
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 16 percent done.
KCNH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.263190e-02	ci left: 3.473041e-01	ci right 3.661794e-01	k: 3567	n:10000
Cons ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
KS ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
KCNH5   10000 perm   2 sec   (4611 perm/sec)   p_kst 6.293000e-01   p_cons 1.245000e-01   p_joint 3.567000e-01

Joint ci ratio: 3.989668e-02	ci left: 3.190069e-01	ci right 3.320438e-01	k: 6510	n:20000
Cons ci ratio: 7.277074e-02	ci left: 1.220703e-01	ci right 1.313386e-01	k: 2533	n:20000
KS ci ratio: 2.122536e-02	ci left: 6.236165e-01	ci right 6.370455e-01	k: 12607	n:20000
KCNH5   20000 perm   5 sec   (4161 perm/sec)   p_kst 6.303500e-01   p_cons 1.266500e-01   p_joint 3.255000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH5.12_3045_20000_0.63035_0.12665_0.3255.png
                gene_name: KCNH5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 18 percent done.
KCNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KCNA1   10000 perm   2 sec   (5371 perm/sec)   p_kst 6.091000e-01   p_cons 8.010000e-02   p_joint 2.629000e-01

Joint ci ratio: 5.219180e-02	ci left: 2.142254e-01	ci right 2.257561e-01	k: 4399	n:20000
Cons ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
KS ci ratio: 2.299330e-02	ci left: 5.855017e-01	ci right 5.991715e-01	k: 11847	n:20000
KCNA1   20000 perm   4 sec   (4814 perm/sec)   p_kst 5.923500e-01   p_cons 8.340000e-02   p_joint 2.199500e-01

Outputting figure to mutsig2_images.part000000000088/KCNA1.11_1492_20000_0.59235_0.0834_0.21995.png
                gene_name: KCNA1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 20 percent done.
KCNC2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
Cons ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
KS ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
KCNC2   10000 perm   2 sec   (5103 perm/sec)   p_kst 6.082000e-01   p_cons 4.897000e-01   p_joint 6.327000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC2.10_1999_10000_0.6082_0.4897_0.6327.png
                gene_name: KCNC2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 21 percent done.
KCND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
KCND2   10000 perm   2 sec   (4874 perm/sec)   p_kst 9.280000e-02   p_cons 8.252000e-01   p_joint 1.699000e-01

Joint ci ratio: 5.843968e-02	ci left: 1.782556e-01	ci right 1.890365e-01	k: 3672	n:20000
Cons ci ratio: 1.274462e-02	ci left: 8.201678e-01	ci right 8.307374e-01	k: 16510	n:20000
KS ci ratio: 8.565064e-02	ci left: 9.072523e-02	ci right 9.889301e-02	k: 1895	n:20000
KCND2   20000 perm   4 sec   (4474 perm/sec)   p_kst 9.475000e-02   p_cons 8.255000e-01   p_joint 1.836000e-01

Outputting figure to mutsig2_images.part000000000088/KCND2.11_1917_20000_0.09475_0.8255_0.1836.png
                gene_name: KCND2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 23 percent done.
KCNH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KCNH2   10000 perm   2 sec   (4641 perm/sec)   p_kst 4.644000e-01   p_cons 1.527000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH2.11_3921_10000_0.4644_0.1527_0.3088.png
                gene_name: KCNH2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
KCNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
Cons ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
KS ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
KCNA5   10000 perm   2 sec   (5105 perm/sec)   p_kst 2.504000e-01   p_cons 1.578000e-01   p_joint 4.338000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA5.10_1846_10000_0.2504_0.1578_0.4338.png
                gene_name: KCNA5
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 26 percent done.
KCNH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KCNH3   10000 perm   2 sec   (4787 perm/sec)   p_kst 6.256000e-01   p_cons 5.538000e-01   p_joint 7.433000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH3.9_3312_10000_0.6256_0.5538_0.7433.png
                gene_name: KCNH3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 28 percent done.
KBTBD10
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
KS ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
KBTBD10   10000 perm   2 sec   (5694 perm/sec)   p_kst 7.881000e-01   p_cons 7.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KBTBD10.4_1845_10000_0.7881_0.7567_1.png
                gene_name: KBTBD10
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
KAT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 3.948518e-02	ci left: 4.864527e-01	ci right 5.061494e-01	k: 4963	n:10000
KAT2B   10000 perm   2 sec   (4802 perm/sec)   p_kst 4.963000e-01   p_cons 2.145000e-01   p_joint 2.971000e-01

Outputting figure to mutsig2_images.part000000000088/KAT2B.7_2571_10000_0.4963_0.2145_0.2971.png
                gene_name: KAT2B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 31 percent done.
KCNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
KS ci ratio: 1.007556e-02	ci left: 9.331980e-01	ci right 9.427449e-01	k: 9381	n:10000
KCNA2   10000 perm   2 sec   (5750 perm/sec)   p_kst 9.381000e-01   p_cons 4.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNA2.7_1504_10000_0.9381_0.472_1.png
                gene_name: KCNA2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
KCND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
KS ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
KCND3   10000 perm   2 sec   (5305 perm/sec)   p_kst 7.956000e-01   p_cons 7.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCND3.7_1996_10000_0.7956_0.7062_1.png
                gene_name: KCND3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
KCNH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
Cons ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
KCNH6   10000 perm   2 sec   (5312 perm/sec)   p_kst 1.793000e-01   p_cons 3.254000e-01   p_joint 3.040000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH6.7_3041_10000_0.1793_0.3254_0.304.png
                gene_name: KCNH6
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
KCNJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
KCNJ2   10000 perm   2 sec   (5819 perm/sec)   p_kst 7.794000e-01   p_cons 5.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ2.7_1288_10000_0.7794_0.5817_1.png
                gene_name: KCNJ2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
KCNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
KCNC1   10000 perm   2 sec   (5557 perm/sec)   p_kst 3.648000e-01   p_cons 1.881000e-01   p_joint 3.484000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC1.6_1806_10000_0.3648_0.1881_0.3484.png
                gene_name: KCNC1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 39 percent done.
KCNJ16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
KCNJ16   10000 perm   2 sec   (6052 perm/sec)   p_kst 1.751000e-01   p_cons 1.471000e-01   p_joint 1.494000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ16.6_1261_10000_0.1751_0.1471_0.1494.png
                gene_name: KCNJ16
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 41 percent done.
KBTBD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
KS ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
KBTBD8   10000 perm   2 sec   (5612 perm/sec)   p_kst 5.660000e-02   p_cons 3.301000e-01   p_joint 8.700000e-02

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 3.916328e-02	ci left: 3.271646e-01	ci right 3.402838e-01	k: 6674	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
KBTBD8   20000 perm   4 sec   (5115 perm/sec)   p_kst 6.190000e-02   p_cons 3.337000e-01   p_joint 8.040000e-02

Joint ci ratio: 7.242243e-02	ci left: 8.573555e-02	ci right 9.221097e-02	k: 2668	n:30000
Cons ci ratio: 3.215607e-02	ci left: 3.259073e-01	ci right 3.365920e-01	k: 9937	n:30000
KS ci ratio: 8.825665e-02	ci left: 5.897053e-02	ci right 6.444807e-02	k: 1850	n:30000
KBTBD8   30000 perm   6 sec   (4887 perm/sec)   p_kst 6.166667e-02   p_cons 3.312333e-01   p_joint 8.893333e-02

Outputting figure to mutsig2_images.part000000000088/KBTBD8.5_1822_30000_0.061667_0.33123_0.088933.png
                gene_name: KBTBD8
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 43 percent done.
KCNJ8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
Cons ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
KS ci ratio: 3.940630e-02	ci left: 4.874523e-01	ci right 5.071493e-01	k: 4973	n:10000
KCNJ8   10000 perm   2 sec   (6411 perm/sec)   p_kst 4.973000e-01   p_cons 2.142000e-01   p_joint 3.358000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ8.5_1283_10000_0.4973_0.2142_0.3358.png
                gene_name: KCNJ8
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 44 percent done.
KAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
Cons ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
KS ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
KAL1   10000 perm   2 sec   (6041 perm/sec)   p_kst 1.528000e-01   p_cons 3.107000e-01   p_joint 3.354000e-01

Outputting figure to mutsig2_images.part000000000088/KAL1.4_2099_10000_0.1528_0.3107_0.3354.png
                gene_name: KAL1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 46 percent done.
KANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
Cons ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
KS ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
KANK1   10000 perm   2 sec   (5042 perm/sec)   p_kst 1.209000e-01   p_cons 8.792000e-01   p_joint 2.545000e-01

Joint ci ratio: 5.328788e-02	ci left: 2.072437e-01	ci right 2.186398e-01	k: 4258	n:20000
Cons ci ratio: 1.029973e-02	ci left: 8.740952e-01	ci right 8.831944e-01	k: 17574	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
KANK1   20000 perm   4 sec   (4534 perm/sec)   p_kst 1.220500e-01   p_cons 8.787000e-01   p_joint 2.129000e-01

Outputting figure to mutsig2_images.part000000000088/KANK1.4_4103_20000_0.12205_0.8787_0.2129.png
                gene_name: KANK1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 48 percent done.
KARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
Cons ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
KS ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
KARS   10000 perm   2 sec   (5756 perm/sec)   p_kst 1.661000e-01   p_cons 7.920000e-02   p_joint 3.853000e-01

Joint ci ratio: 5.274542e-02	ci left: 2.106600e-01	ci right 2.221226e-01	k: 4327	n:20000
Cons ci ratio: 9.367852e-02	ci left: 7.671668e-02	ci right 8.430580e-02	k: 1609	n:20000
KS ci ratio: 6.220753e-02	ci left: 1.604722e-01	ci right 1.708252e-01	k: 3312	n:20000
KARS   20000 perm   4 sec   (5128 perm/sec)   p_kst 1.656000e-01   p_cons 8.045000e-02   p_joint 2.163500e-01

Outputting figure to mutsig2_images.part000000000088/KARS.4_2000_20000_0.1656_0.08045_0.21635.png
                gene_name: KARS
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 49 percent done.
KAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
KS ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KAZ   10000 perm   2 sec   (5824 perm/sec)   p_kst 5.927000e-01   p_cons 5.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KAZ.4_2644_10000_0.5927_0.5174_1.png
                gene_name: KAZ
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
KBTBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
KS ci ratio: 8.010044e-03	ci left: 9.559730e-01	ci right 9.637562e-01	k: 9600	n:10000
KBTBD5   10000 perm   2 sec   (5808 perm/sec)   p_kst 9.600000e-01   p_cons 2.091000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD5.4_1890_10000_0.96_0.2091_0.5334.png
                gene_name: KBTBD5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 52 percent done.
KBTBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
Cons ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
KS ci ratio: 5.303562e-02	ci left: 3.438259e-01	ci right 3.626596e-01	k: 3532	n:10000
KBTBD6   10000 perm   2 sec   (6007 perm/sec)   p_kst 3.532000e-01   p_cons 7.270000e-01   p_joint 6.311000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD6.4_2029_10000_0.3532_0.727_0.6311.png
                gene_name: KBTBD6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 54 percent done.
KBTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880420e-02	ci left: 4.951504e-01	ci right 5.148467e-01	k: 5050	n:10000
Cons ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
KS ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
KBTBD7   10000 perm   2 sec   (5568 perm/sec)   p_kst 3.698000e-01   p_cons 6.865000e-01   p_joint 5.050000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD7.4_2059_10000_0.3698_0.6865_0.505.png
                gene_name: KBTBD7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 56 percent done.
KCNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
Cons ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
KS ci ratio: 3.372486e-02	ci left: 5.648393e-01	ci right 5.843172e-01	k: 5746	n:10000
KCNA10   10000 perm   2 sec   (5952 perm/sec)   p_kst 5.746000e-01   p_cons 4.819000e-01   p_joint 6.826000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA10.4_1540_10000_0.5746_0.4819_0.6826.png
                gene_name: KCNA10
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 57 percent done.
KCNH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
KCNH4   10000 perm   2 sec   (5323 perm/sec)   p_kst 9.328000e-01   p_cons 7.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH4.4_3118_10000_0.9328_0.7585_1.png
                gene_name: KCNH4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
KAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KAT5   10000 perm   2 sec   (6548 perm/sec)   p_kst 1.634000e-01   p_cons 1.602000e-01   p_joint 2.490000e-01

Outputting figure to mutsig2_images.part000000000088/KAT5.3_1693_10000_0.1634_0.1602_0.249.png
                gene_name: KAT5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 61 percent done.
KBTBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
KBTBD2   10000 perm   2 sec   (6052 perm/sec)   p_kst 3.385000e-01   p_cons 5.565000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD2.3_1884_10000_0.3385_0.5565_0.3964.png
                gene_name: KBTBD2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 62 percent done.
KCMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
Cons ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
KS ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
KCMF1   10000 perm   2 sec   (6247 perm/sec)   p_kst 9.676000e-01   p_cons 2.960000e-01   p_joint 6.120000e-01

Outputting figure to mutsig2_images.part000000000088/KCMF1.3_1174_10000_0.9676_0.296_0.612.png
                gene_name: KCMF1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 64 percent done.
KCNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
Cons ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KS ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
KCNA3   10000 perm   2 sec   (5910 perm/sec)   p_kst 4.940000e-02   p_cons 2.568000e-01   p_joint 8.540000e-02

Joint ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
Cons ci ratio: 4.800320e-02	ci left: 2.440105e-01	ci right 2.560622e-01	k: 5000	n:20000
KS ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
KCNA3   20000 perm   4 sec   (5356 perm/sec)   p_kst 5.010000e-02   p_cons 2.500000e-01   p_joint 6.295000e-02

Joint ci ratio: 7.687015e-02	ci left: 7.669223e-02	ci right 8.285611e-02	k: 2392	n:30000
Cons ci ratio: 3.795784e-02	ci left: 2.572626e-01	ci right 2.672501e-01	k: 7867	n:30000
KS ci ratio: 9.799811e-02	ci left: 4.814675e-02	ci right 5.314073e-02	k: 1518	n:30000
KCNA3   30000 perm   6 sec   (5087 perm/sec)   p_kst 5.060000e-02   p_cons 2.622333e-01   p_joint 7.973333e-02

Outputting figure to mutsig2_images.part000000000088/KCNA3.3_1732_30000_0.0506_0.26223_0.079733.png
                gene_name: KCNA3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 66 percent done.
KCNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
Cons ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
KS ci ratio: 1.746502e-02	ci left: 8.269673e-01	ci right 8.416374e-01	k: 8344	n:10000
KCNA6   10000 perm   2 sec   (6320 perm/sec)   p_kst 8.344000e-01   p_cons 6.824000e-01   p_joint 8.519000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA6.3_1594_10000_0.8344_0.6824_0.8519.png
                gene_name: KCNA6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 67 percent done.
KCNA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.859077e-02	ci left: 8.086701e-01	ci right 8.239452e-01	k: 8164	n:10000
KS ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
KCNA7   10000 perm   2 sec   (6201 perm/sec)   p_kst 6.758000e-01   p_cons 8.164000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNA7.3_1379_10000_0.6758_0.8164_1.png
                gene_name: KCNA7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
KCNF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
Cons ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
KS ci ratio: 2.914273e-02	ci left: 6.345245e-01	ci right 6.533915e-01	k: 6440	n:10000
KCNF1   10000 perm   2 sec   (6222 perm/sec)   p_kst 6.440000e-01   p_cons 9.304000e-01   p_joint 7.641000e-01

Outputting figure to mutsig2_images.part000000000088/KCNF1.3_1489_10000_0.644_0.9304_0.7641.png
                gene_name: KCNF1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 70 percent done.
KCNJ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
KCNJ6   10000 perm   2 sec   (6455 perm/sec)   p_kst 3.820000e-01   p_cons 1.347000e-01   p_joint 3.820000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ6.3_1284_10000_0.382_0.1347_0.382.png
                gene_name: KCNJ6
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 72 percent done.
JUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
Cons ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
KS ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
JUB   10000 perm   2 sec   (6442 perm/sec)   p_kst 2.923000e-01   p_cons 4.462000e-01   p_joint 8.214000e-01

Outputting figure to mutsig2_images.part000000000088/JUB.2_1649_10000_0.2923_0.4462_0.8214.png
                gene_name: JUB
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 74 percent done.
KANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
Cons ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
KS ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
KANK2   10000 perm   2 sec   (6131 perm/sec)   p_kst 4.821000e-01   p_cons 7.217000e-01   p_joint 7.537000e-01

Outputting figure to mutsig2_images.part000000000088/KANK2.2_2624_10000_0.4821_0.7217_0.7537.png
                gene_name: KANK2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 75 percent done.
KAT2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
KS ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
KAT2A   10000 perm   2 sec   (5865 perm/sec)   p_kst 4.235000e-01   p_cons 3.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KAT2A.2_2586_10000_0.4235_0.359_1.png
                gene_name: KAT2A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
KATNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
Cons ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
KS ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KATNAL1   10000 perm   2 sec   (6517 perm/sec)   p_kst 6.704000e-01   p_cons 3.604000e-01   p_joint 9.732000e-01

Outputting figure to mutsig2_images.part000000000088/KATNAL1.2_1513_10000_0.6704_0.3604_0.9732.png
                gene_name: KATNAL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 79 percent done.
KCNAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 3.705782e-02	ci left: 5.181586e-01	ci right 5.378251e-01	k: 5280	n:10000
KCNAB1   10000 perm   2 sec   (6422 perm/sec)   p_kst 5.280000e-01   p_cons 3.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNAB1.2_1787_10000_0.528_0.3672_1.png
                gene_name: KCNAB1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
KCNAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
KCNAB2   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.090000e-02   p_cons 2.695000e-01   p_joint 4.790000e-02

Joint ci ratio: 5.465196e-02	ci left: 1.989779e-01	ci right 2.102081e-01	k: 4091	n:20000
Cons ci ratio: 4.606193e-02	ci left: 2.596870e-01	ci right 2.719811e-01	k: 5316	n:20000
KS ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
KCNAB2   20000 perm   3 sec   (5856 perm/sec)   p_kst 1.995000e-02   p_cons 2.658000e-01   p_joint 2.045500e-01

Joint ci ratio: 2.901961e-02	ci left: 3.726746e-01	ci right 3.836823e-01	k: 11345	n:30000
Cons ci ratio: 3.739709e-02	ci left: 2.630271e-01	ci right 2.730845e-01	k: 8041	n:30000
KS ci ratio: 1.559217e-01	ci left: 1.902257e-02	ci right 2.227119e-02	k: 618	n:30000
KCNAB2   30000 perm   5 sec   (5578 perm/sec)   p_kst 2.060000e-02   p_cons 2.680333e-01   p_joint 3.781667e-01

Joint ci ratio: 2.522950e-02	ci left: 3.715989e-01	ci right 3.811191e-01	k: 15054	n:40000
Cons ci ratio: 3.248551e-02	ci left: 2.625200e-01	ci right 2.712139e-01	k: 10674	n:40000
KS ci ratio: 1.371109e-01	ci left: 1.865045e-02	ci right 2.141984e-02	k: 800	n:40000
KCNAB2   40000 perm   7 sec   (5385 perm/sec)   p_kst 2.000000e-02   p_cons 2.668500e-01   p_joint 3.763500e-01

Joint ci ratio: 2.539291e-02	ci left: 3.186624e-01	ci right 3.268782e-01	k: 16138	n:50000
Cons ci ratio: 2.899629e-02	ci left: 2.637829e-01	ci right 2.715641e-01	k: 13383	n:50000
KS ci ratio: 1.233450e-01	ci left: 1.857744e-02	ci right 2.103876e-02	k: 989	n:50000
KCNAB2   50000 perm   10 sec   (5218 perm/sec)   p_kst 1.978000e-02   p_cons 2.676600e-01   p_joint 3.227600e-01

Joint ci ratio: 2.315467e-02	ci left: 3.195078e-01	ci right 3.270093e-01	k: 19395	n:60000
Cons ci ratio: 2.648542e-02	ci left: 2.638947e-01	ci right 2.709945e-01	k: 16046	n:60000
KS ci ratio: 1.119748e-01	ci left: 1.889472e-02	ci right 2.115205e-02	k: 1200	n:60000
KCNAB2   60000 perm   12 sec   (5103 perm/sec)   p_kst 2.000000e-02   p_cons 2.674333e-01   p_joint 3.232500e-01

Joint ci ratio: 2.140537e-02	ci left: 3.204336e-01	ci right 3.273810e-01	k: 22673	n:70000
Cons ci ratio: 2.448013e-02	ci left: 2.648068e-01	ci right 2.713839e-01	k: 18766	n:70000
KS ci ratio: 1.037884e-01	ci left: 1.893391e-02	ci right 2.102044e-02	k: 1397	n:70000
KCNAB2   70000 perm   14 sec   (4979 perm/sec)   p_kst 1.995714e-02   p_cons 2.680857e-01   p_joint 3.239000e-01

Joint ci ratio: 2.006190e-02	ci left: 3.198097e-01	ci right 3.263032e-01	k: 25844	n:80000
Cons ci ratio: 2.287721e-02	ci left: 2.653938e-01	ci right 2.715480e-01	k: 21477	n:80000
KS ci ratio: 9.767054e-02	ci left: 1.877262e-02	ci right 2.071243e-02	k: 1578	n:80000
KCNAB2   80000 perm   16 sec   (4868 perm/sec)   p_kst 1.972500e-02   p_cons 2.684625e-01   p_joint 3.230500e-01

Outputting figure to mutsig2_images.part000000000088/KCNAB2.2_1164_80000_0.019725_0.26846_0.32305.png
                gene_name: KCNAB2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 82 percent done.
KCNC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
KCNC4   10000 perm   2 sec   (6027 perm/sec)   p_kst 6.001000e-01   p_cons 5.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNC4.2_2124_10000_0.6001_0.5666_1.png
                gene_name: KCNC4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
KCNE1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
KS ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KCNE1L   10000 perm   1 sec   (7094 perm/sec)   p_kst 2.310000e-02   p_cons 4.955000e-01   p_joint 1.293000e-01

Joint ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
Cons ci ratio: 2.798665e-02	ci left: 4.881969e-01	ci right 5.021045e-01	k: 9903	n:20000
KS ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
KCNE1L   20000 perm   3 sec   (6142 perm/sec)   p_kst 2.240000e-02   p_cons 4.951500e-01   p_joint 4.865000e-02

Joint ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
Cons ci ratio: 2.275050e-02	ci left: 4.916926e-01	ci right 5.030412e-01	k: 14921	n:30000
KS ci ratio: 1.470676e-01	ci left: 2.142975e-02	ci right 2.486345e-02	k: 693	n:30000
KCNE1L   30000 perm   5 sec   (5815 perm/sec)   p_kst 2.310000e-02   p_cons 4.973667e-01   p_joint 5.153333e-02

Joint ci ratio: 4.573252e-02	ci left: 1.516146e-01	ci right 1.587355e-01	k: 6206	n:40000
Cons ci ratio: 1.971327e-02	ci left: 4.921880e-01	ci right 5.020124e-01	k: 19884	n:40000
KS ci ratio: 1.288940e-01	ci left: 2.114153e-02	ci right 2.407834e-02	k: 903	n:40000
KCNE1L   40000 perm   7 sec   (5609 perm/sec)   p_kst 2.257500e-02   p_cons 4.971000e-01   p_joint 1.551500e-01

Joint ci ratio: 4.087252e-02	ci left: 1.521949e-01	ci right 1.585652e-01	k: 7768	n:50000
Cons ci ratio: 1.764844e-02	ci left: 4.922478e-01	ci right 5.010326e-01	k: 24832	n:50000
KS ci ratio: 1.150784e-01	ci left: 2.137335e-02	ci right 2.400247e-02	k: 1133	n:50000
KCNE1L   50000 perm   9 sec   (5442 perm/sec)   p_kst 2.266000e-02   p_cons 4.966400e-01   p_joint 1.553600e-01

Joint ci ratio: 3.793433e-02	ci left: 1.482098e-01	ci right 1.539573e-01	k: 9064	n:60000
Cons ci ratio: 1.611964e-02	ci left: 4.923579e-01	ci right 5.003757e-01	k: 29782	n:60000
KS ci ratio: 1.046904e-01	ci left: 2.163668e-02	ci right 2.404311e-02	k: 1369	n:60000
KCNE1L   60000 perm   11 sec   (5322 perm/sec)   p_kst 2.281667e-02   p_cons 4.963667e-01   p_joint 1.510667e-01

Joint ci ratio: 3.446415e-02	ci left: 1.532908e-01	ci right 1.586806e-01	k: 10918	n:70000
Cons ci ratio: 1.489356e-02	ci left: 4.936748e-01	ci right 5.010968e-01	k: 34817	n:70000
KS ci ratio: 9.730944e-02	ci left: 2.155351e-02	ci right 2.377202e-02	k: 1585	n:70000
KCNE1L   70000 perm   13 sec   (5209 perm/sec)   p_kst 2.264286e-02   p_cons 4.973857e-01   p_joint 1.559714e-01

Outputting figure to mutsig2_images.part000000000088/KCNE1L.2_433_70000_0.022643_0.49739_0.15597.png
                gene_name: KCNE1L
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 85 percent done.
KCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
KCNG1   10000 perm   2 sec   (6418 perm/sec)   p_kst 1.160000e-02   p_cons 7.403000e-01   p_joint 1.160000e-02

Joint ci ratio: 2.677895e-01	ci left: 9.180527e-03	ci right 1.206441e-02	k: 211	n:20000
Cons ci ratio: 1.643849e-02	ci left: 7.336599e-01	ci right 7.458704e-01	k: 14796	n:20000
KS ci ratio: 2.677895e-01	ci left: 9.180527e-03	ci right 1.206441e-02	k: 211	n:20000
KCNG1   20000 perm   4 sec   (5696 perm/sec)   p_kst 1.055000e-02   p_cons 7.398000e-01   p_joint 1.055000e-02

Joint ci ratio: 2.165951e-01	ci left: 9.629741e-03	ci right 1.199976e-02	k: 323	n:30000
Cons ci ratio: 1.343598e-02	ci left: 7.343931e-01	ci right 7.443605e-01	k: 22182	n:30000
KS ci ratio: 2.165951e-01	ci left: 9.629741e-03	ci right 1.199976e-02	k: 323	n:30000
KCNG1   30000 perm   6 sec   (5396 perm/sec)   p_kst 1.076667e-02   p_cons 7.394000e-01   p_joint 1.076667e-02

Joint ci ratio: 1.893581e-01	ci left: 9.595733e-03	ci right 1.162626e-02	k: 423	n:40000
Cons ci ratio: 1.162234e-02	ci left: 7.355208e-01	ci right 7.441443e-01	k: 29594	n:40000
KS ci ratio: 1.893581e-01	ci left: 9.595733e-03	ci right 1.162626e-02	k: 423	n:40000
KCNG1   40000 perm   8 sec   (5253 perm/sec)   p_kst 1.057500e-02   p_cons 7.398500e-01   p_joint 1.057500e-02

Joint ci ratio: 1.682480e-01	ci left: 9.835842e-03	ci right 1.166163e-02	k: 536	n:50000
Cons ci ratio: 1.037239e-02	ci left: 7.368347e-01	ci right 7.445373e-01	k: 37035	n:50000
KS ci ratio: 1.682480e-01	ci left: 9.835842e-03	ci right 1.166163e-02	k: 536	n:50000
KCNG1   50000 perm   10 sec   (5103 perm/sec)   p_kst 1.072000e-02   p_cons 7.407000e-01   p_joint 1.072000e-02

Joint ci ratio: 1.527999e-01	ci left: 1.002043e-02	ci right 1.169406e-02	k: 650	n:60000
Cons ci ratio: 9.465378e-03	ci left: 7.373073e-01	ci right 7.443360e-01	k: 44450	n:60000
KS ci ratio: 1.527999e-01	ci left: 1.002043e-02	ci right 1.169406e-02	k: 650	n:60000
KCNG1   60000 perm   12 sec   (5018 perm/sec)   p_kst 1.083333e-02   p_cons 7.408333e-01   p_joint 1.083333e-02

Joint ci ratio: 1.421768e-01	ci left: 9.978581e-03	ci right 1.151952e-02	k: 751	n:70000
Cons ci ratio: 8.790737e-03	ci left: 7.363606e-01	ci right 7.428766e-01	k: 51774	n:70000
KS ci ratio: 1.421768e-01	ci left: 9.978581e-03	ci right 1.151952e-02	k: 751	n:70000
KCNG1   70000 perm   14 sec   (4923 perm/sec)   p_kst 1.072857e-02   p_cons 7.396286e-01   p_joint 1.072857e-02

Joint ci ratio: 1.334209e-01	ci left: 9.962326e-03	ci right 1.139849e-02	k: 853	n:80000
Cons ci ratio: 8.201981e-03	ci left: 7.375604e-01	ci right 7.436472e-01	k: 59249	n:80000
KS ci ratio: 1.334209e-01	ci left: 9.962326e-03	ci right 1.139849e-02	k: 853	n:80000
KCNG1   80000 perm   17 sec   (4828 perm/sec)   p_kst 1.066250e-02   p_cons 7.406125e-01   p_joint 1.066250e-02

Joint ci ratio: 1.251828e-01	ci left: 1.010267e-02	ci right 1.146247e-02	k: 969	n:90000
Cons ci ratio: 7.742548e-03	ci left: 7.372549e-01	ci right 7.429963e-01	k: 66612	n:90000
KS ci ratio: 1.251828e-01	ci left: 1.010267e-02	ci right 1.146247e-02	k: 969	n:90000
KCNG1   90000 perm   19 sec   (4745 perm/sec)   p_kst 1.076667e-02   p_cons 7.401333e-01   p_joint 1.076667e-02

Joint ci ratio: 1.185245e-01	ci left: 1.017830e-02	ci right 1.147031e-02	k: 1081	n:100000
Cons ci ratio: 7.332690e-03	ci left: 7.380621e-01	ci right 7.435039e-01	k: 74079	n:100000
KS ci ratio: 1.185245e-01	ci left: 1.017830e-02	ci right 1.147031e-02	k: 1081	n:100000
KCNG1   100000 perm   21 sec   (4653 perm/sec)   p_kst 1.081000e-02   p_cons 7.407900e-01   p_joint 1.081000e-02

Joint ci ratio: 1.126362e-01	ci left: 1.027710e-02	ci right 1.151253e-02	k: 1197	n:110000
Cons ci ratio: 6.987128e-03	ci left: 7.384276e-01	ci right 7.436142e-01	k: 81513	n:110000
KS ci ratio: 1.126362e-01	ci left: 1.027710e-02	ci right 1.151253e-02	k: 1197	n:110000
KCNG1   110000 perm   24 sec   (4576 perm/sec)   p_kst 1.088182e-02   p_cons 7.410273e-01   p_joint 1.088182e-02

Joint ci ratio: 1.086810e-01	ci left: 1.014178e-02	ci right 1.131538e-02	k: 1286	n:120000
Cons ci ratio: 6.695371e-03	ci left: 7.382104e-01	ci right 7.431779e-01	k: 88884	n:120000
KS ci ratio: 1.086810e-01	ci left: 1.014178e-02	ci right 1.131538e-02	k: 1286	n:120000
KCNG1   120000 perm   27 sec   (4486 perm/sec)   p_kst 1.071667e-02   p_cons 7.407000e-01   p_joint 1.071667e-02

Joint ci ratio: 1.044268e-01	ci left: 1.016279e-02	ci right 1.128996e-02	k: 1393	n:130000
Cons ci ratio: 6.429356e-03	ci left: 7.385091e-01	ci right 7.432802e-01	k: 96317	n:130000
KS ci ratio: 1.044268e-01	ci left: 1.016279e-02	ci right 1.128996e-02	k: 1393	n:130000
KCNG1   130000 perm   30 sec   (4407 perm/sec)   p_kst 1.071538e-02   p_cons 7.409000e-01   p_joint 1.071538e-02

Joint ci ratio: 1.008400e-01	ci left: 1.013978e-02	ci right 1.122348e-02	k: 1494	n:140000
Cons ci ratio: 6.194100e-03	ci left: 7.386823e-01	ci right 7.432791e-01	k: 103738	n:140000
KS ci ratio: 1.008400e-01	ci left: 1.013978e-02	ci right 1.122348e-02	k: 1494	n:140000
KCNG1   140000 perm   32 sec   (4331 perm/sec)   p_kst 1.067143e-02   p_cons 7.409857e-01   p_joint 1.067143e-02

Joint ci ratio: 9.772285e-02	ci left: 1.009440e-02	ci right 1.113798e-02	k: 1591	n:150000
Cons ci ratio: 5.983743e-03	ci left: 7.387817e-01	ci right 7.432223e-01	k: 111151	n:150000
KS ci ratio: 9.772285e-02	ci left: 1.009440e-02	ci right 1.113798e-02	k: 1591	n:150000
KCNG1   150000 perm   35 sec   (4267 perm/sec)   p_kst 1.060667e-02   p_cons 7.410067e-01   p_joint 1.060667e-02

Outputting figure to mutsig2_images.part000000000088/KCNG1.2_1550_150000_0.010607_0.74101_0.010607.png
                gene_name: KCNG1
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 87 percent done.
KCNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
Cons ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
KCNG2   10000 perm   1 sec   (6811 perm/sec)   p_kst 1.107000e-01   p_cons 1.925000e-01   p_joint 2.104000e-01

Joint ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
Cons ci ratio: 5.798570e-02	ci left: 1.805789e-01	ci right 1.914126e-01	k: 3719	n:20000
KS ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
KCNG2   20000 perm   3 sec   (6062 perm/sec)   p_kst 1.081500e-01   p_cons 1.859500e-01   p_joint 1.282000e-01

Outputting figure to mutsig2_images.part000000000088/KCNG2.2_1408_20000_0.10815_0.18595_0.1282.png
                gene_name: KCNG2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 89 percent done.
KCNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KCNG3   10000 perm   2 sec   (6498 perm/sec)   p_kst 7.340000e-02   p_cons 2.093000e-01   p_joint 1.329000e-01

Joint ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
Cons ci ratio: 5.398919e-02	ci left: 2.029371e-01	ci right 2.142477e-01	k: 4171	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
KCNG3   20000 perm   3 sec   (5840 perm/sec)   p_kst 7.190000e-02   p_cons 2.085500e-01   p_joint 1.201000e-01

Outputting figure to mutsig2_images.part000000000088/KCNG3.2_1319_20000_0.0719_0.20855_0.1201.png
                gene_name: KCNG3
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 90 percent done.
KCNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
Cons ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
KS ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
KCNG4   10000 perm   2 sec   (6328 perm/sec)   p_kst 1.874000e-01   p_cons 2.122000e-01   p_joint 1.285000e-01

Joint ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
Cons ci ratio: 5.406288e-02	ci left: 2.024917e-01	ci right 2.137933e-01	k: 4162	n:20000
KS ci ratio: 5.807201e-02	ci left: 1.801340e-01	ci right 1.909576e-01	k: 3710	n:20000
KCNG4   20000 perm   4 sec   (5673 perm/sec)   p_kst 1.855000e-01   p_cons 2.081000e-01   p_joint 5.830000e-02

Joint ci ratio: 9.637173e-02	ci left: 4.974238e-02	ci right 5.481144e-02	k: 1567	n:30000
Cons ci ratio: 4.412225e-02	ci left: 2.036834e-01	ci right 2.129065e-01	k: 6248	n:30000
KS ci ratio: 4.742366e-02	ci left: 1.810824e-01	ci right 1.899119e-01	k: 5564	n:30000
KCNG4   30000 perm   6 sec   (5420 perm/sec)   p_kst 1.854667e-01   p_cons 2.082667e-01   p_joint 5.223333e-02

Outputting figure to mutsig2_images.part000000000088/KCNG4.2_1566_30000_0.18547_0.20827_0.052233.png
                gene_name: KCNG4
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 92 percent done.
KCNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
KS ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KCNIP1   10000 perm   1 sec   (7106 perm/sec)   p_kst 9.609000e-01   p_cons 4.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNIP1.2_812_10000_0.9609_0.477_1.png
                gene_name: KCNIP1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KCNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
KCNJ1   10000 perm   2 sec   (6603 perm/sec)   p_kst 1.469000e-01   p_cons 7.400000e-02   p_joint 5.090000e-02

Joint ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
Cons ci ratio: 9.762416e-02	ci left: 7.094677e-02	ci right 7.827748e-02	k: 1491	n:20000
KS ci ratio: 6.733458e-02	ci left: 1.399992e-01	ci right 1.498043e-01	k: 2897	n:20000
KCNJ1   20000 perm   3 sec   (5863 perm/sec)   p_kst 1.448500e-01   p_cons 7.455000e-02   p_joint 5.215000e-02

Joint ci ratio: 1.221288e-01	ci left: 3.116896e-02	ci right 3.525542e-02	k: 995	n:30000
Cons ci ratio: 7.986470e-02	ci left: 7.135698e-02	ci right 7.732577e-02	k: 2229	n:30000
KS ci ratio: 5.513459e-02	ci left: 1.402098e-01	ci right 1.481926e-01	k: 4325	n:30000
KCNJ1   30000 perm   5 sec   (5525 perm/sec)   p_kst 1.441667e-01   p_cons 7.430000e-02   p_joint 3.316667e-02

Joint ci ratio: 8.450356e-02	ci left: 4.888872e-02	ci right 5.322675e-02	k: 2041	n:40000
Cons ci ratio: 6.879504e-02	ci left: 7.248644e-02	ci right 7.767545e-02	k: 3002	n:40000
KS ci ratio: 4.797183e-02	ci left: 1.396076e-01	ci right 1.464943e-01	k: 5721	n:40000
KCNJ1   40000 perm   7 sec   (5366 perm/sec)   p_kst 1.430250e-01   p_cons 7.505000e-02   p_joint 5.102500e-02

Outputting figure to mutsig2_images.part000000000088/KCNJ1.2_1184_40000_0.14303_0.07505_0.051025.png
                gene_name: KCNJ1
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 95 percent done.
KCNJ10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
KCNJ10   10000 perm   2 sec   (6506 perm/sec)   p_kst 2.943000e-01   p_cons 4.171000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ10.2_1144_10000_0.2943_0.4171_0.3582.png
                gene_name: KCNJ10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 97 percent done.
KCNJ15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
KS ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
KCNJ15   10000 perm   1 sec   (6670 perm/sec)   p_kst 8.777000e-01   p_cons 8.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ15.2_1132_10000_0.8777_0.8364_1.png
                gene_name: KCNJ15
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
KCNJ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
KS ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KCNJ4   10000 perm   2 sec   (6574 perm/sec)   p_kst 1.601000e-01   p_cons 8.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ4.2_1342_10000_0.1601_0.8105_1.png
                gene_name: KCNJ4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000088
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 88 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4422097: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000089> was used as the working directory.
Started at Wed Oct 24 17:57:39 2012
Results reported at Wed Oct 24 18:11:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000089.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000089.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 89  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000089.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    855.16 sec.
    Max Memory :      5365 MB
    Max Swap   :      7628 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
89
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 89
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 89: processing genes 7962 - 8052
Calculating significance of each gene.
Using projection method.
7962	KCNK10	3.355338e-02
7963	KCNK12	1
7964	KCNK13	3.701718e-01
7965	KCNK15	4.356467e-01
7966	KCNK16	5.581718e-01
7967	KCNK17	9.275413e-02
7968	KCNK18	1
7969	KCNK2	5.487033e-01
7970	KCNK3	1
7971	KCNK4	1
7972	KCNK5	8.951543e-01
7973	KCNK6	1.877360e-01
7974	KCNK7	8.562746e-01
7975	KCNK9	2.355350e-01
7976	KCNMA1	1
7977	KCNMB1	1.195984e-02
7978	KCNMB2	1.479640e-01
7979	KCNMB3	1
7980	KCNMB4	4.928428e-01
7981	KCNN1	9.211865e-01
In gene KCNN2 the following bins exceed PROBCAP:
    LUAD-75-6203-TP	categ 6	N = 1722    n = 1	mu =   6.69e-08
7982	KCNN2	1.153594e-02
7983	KCNN3	1.881397e-01
7984	KCNN4	6.971138e-01
7985	KCNQ1	9.196989e-01
7986	KCNQ2	1
7987	KCNQ3	9.978231e-01
7988	KCNQ4	8.253867e-01
7989	KCNQ5	1
7990	KCNRG	1
7991	KCNS1	1
7992	KCNS2	8.204626e-04
7993	KCNS3	6.223489e-01
7994	KCNT1	9.966167e-01
7995	KCNT2	2.867644e-06
7996	KCNU1	6.462343e-01
7997	KCNV1	8.434966e-02
7998	KCNV2	1
7999	KCTD1	1
8000/18094 8000	KCTD10	1
8001	KCTD11	1
8002	KCTD12	1
8003	KCTD13	7.599738e-01
8004	KCTD14	6.308438e-01
8005	KCTD15	3.586011e-01
8006	KCTD16	8.775816e-01
8007	KCTD17	8.027878e-01
8008	KCTD18	9.554596e-01
8009	KCTD19	7.568724e-01
8010	KCTD2	2.797878e-01
8011	KCTD20	6.007936e-01
8012	KCTD21	1
8013	KCTD3	4.887317e-02
8014	KCTD4	5.738761e-01
8015	KCTD5	2.857629e-01
8016	KCTD6	1
8017	KCTD7	3.688698e-01
8018	KCTD8	2.339136e-01
8019	KCTD9	8.144608e-01
8020	KDELC1	2.494507e-01
8021	KDELC2	6.024954e-01
8022	KDELR1	4.976900e-01
8023	KDELR2	5.345766e-01
8024	KDELR3	2.128684e-01
8025	KDM1A	8.791954e-01
8026	KDM1B	5.547508e-01
8027	KDM2A	9.959991e-01
8028	KDM2B	9.259362e-01
8029	KDM3A	9.659199e-01
8030	KDM3B	5.807633e-01
8031	KDM4A	9.946093e-01
8032	KDM4B	9.842973e-01
8033	KDM4C	8.514304e-01
8034	KDM4D	8.149804e-01
8035	KDM4DL	4.617916e-02
8036	KDM5A	4.586061e-01
8037	KDM5B	4.830090e-01
In gene KDM5C the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 4195    n = 1	mu =   3.68e-07
8038	KDM5C	3.088231e-01
8039	KDM5D	1
8040	KDM6A	9.984496e-01
In gene KDM6B the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 4381    n = 1	mu =   5.35e-07
8041	KDM6B	9.968611e-01
8042	KDR	8.766863e-02
8043	KDSR	7.466121e-01
8044	KEAP1	2.331468e-15
8045	KEL	9.740144e-01
8046	KERA	3.835760e-01
8047	KHDC1	3.865361e-01
8048	KHDC1L	1
8049	KHDRBS1	6.994414e-01
8050	KHDRBS2	3.769136e-01
8051	KHDRBS3	1
8052	KHK	6.619023e-01
Done

Running MutSig 2:
Scatter job 89: processing genes 7962 - 8052
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KEAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
KEAP1   10000 perm   2 sec   (4185 perm/sec)   p_kst 7.790000e-02   p_cons 9.400000e-03   p_joint 2.320000e-02

Joint ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
Cons ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
KS ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
KEAP1   20000 perm   7 sec   (2899 perm/sec)   p_kst 7.400000e-02   p_cons 9.900000e-03   p_joint 1.540000e-02

Joint ci ratio: 2.071094e-01	ci left: 1.057722e-02	ci right 1.305201e-02	k: 353	n:30000
Cons ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
KS ci ratio: 7.982604e-02	ci left: 7.142242e-02	ci right 7.739365e-02	k: 2231	n:30000
KEAP1   30000 perm   10 sec   (3126 perm/sec)   p_kst 7.436667e-02   p_cons 8.800000e-03   p_joint 1.176667e-02

Joint ci ratio: 2.001318e-01	ci left: 8.548862e-03	ci right 1.047335e-02	k: 379	n:40000
Cons ci ratio: 2.092154e-01	ci left: 7.789524e-03	ci right 9.632863e-03	k: 347	n:40000
KS ci ratio: 6.927002e-02	ci left: 7.155158e-02	ci right 7.671045e-02	k: 2964	n:40000
KEAP1   40000 perm   12 sec   (3235 perm/sec)   p_kst 7.410000e-02   p_cons 8.675000e-03   p_joint 9.475000e-03

Joint ci ratio: 1.700170e-01	ci left: 9.625067e-03	ci right 1.143244e-02	k: 525	n:50000
Cons ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
KS ci ratio: 6.185129e-02	ci left: 7.205543e-02	ci right 7.667413e-02	k: 3717	n:50000
KEAP1   50000 perm   15 sec   (3285 perm/sec)   p_kst 7.434000e-02   p_cons 8.760000e-03   p_joint 1.050000e-02

Joint ci ratio: 1.268498e-01	ci left: 1.467202e-02	ci right 1.667523e-02	k: 939	n:60000
Cons ci ratio: 1.682424e-01	ci left: 8.211909e-03	ci right 9.736156e-03	k: 537	n:60000
KS ci ratio: 5.667256e-02	ci left: 7.175325e-02	ci right 7.595474e-02	k: 4430	n:60000
KEAP1   60000 perm   18 sec   (3310 perm/sec)   p_kst 7.383333e-02   p_cons 8.950000e-03   p_joint 1.565000e-02

Joint ci ratio: 1.283149e-01	ci left: 1.231227e-02	ci right 1.401415e-02	k: 920	n:70000
Cons ci ratio: 1.531574e-01	ci left: 8.560956e-03	ci right 9.994450e-03	k: 648	n:70000
KS ci ratio: 5.247687e-02	ci left: 7.188789e-02	ci right 7.577610e-02	k: 5167	n:70000
KEAP1   70000 perm   21 sec   (3319 perm/sec)   p_kst 7.381429e-02   p_cons 9.257143e-03   p_joint 1.314286e-02

Joint ci ratio: 1.143571e-01	ci left: 1.364660e-02	ci right 1.531389e-02	k: 1157	n:80000
Cons ci ratio: 1.440237e-01	ci left: 8.513843e-03	ci right 9.847116e-03	k: 733	n:80000
KS ci ratio: 4.911588e-02	ci left: 7.193575e-02	ci right 7.557024e-02	k: 5899	n:80000
KEAP1   80000 perm   24 sec   (3314 perm/sec)   p_kst 7.373750e-02   p_cons 9.162500e-03   p_joint 1.446250e-02

Joint ci ratio: 1.064873e-01	ci left: 1.404285e-02	ci right 1.563309e-02	k: 1334	n:90000
Cons ci ratio: 1.356006e-01	ci left: 8.575811e-03	ci right 9.833906e-03	k: 827	n:90000
KS ci ratio: 4.630127e-02	ci left: 7.205615e-02	ci right 7.548249e-02	k: 6638	n:90000
KEAP1   90000 perm   27 sec   (3303 perm/sec)   p_kst 7.375556e-02   p_cons 9.188889e-03   p_joint 1.482222e-02

Joint ci ratio: 1.032474e-01	ci left: 1.347581e-02	ci right 1.495257e-02	k: 1420	n:100000
Cons ci ratio: 1.281509e-01	ci left: 8.675613e-03	ci right 9.873109e-03	k: 926	n:100000
KS ci ratio: 4.388246e-02	ci left: 7.227604e-02	ci right 7.552872e-02	k: 7389	n:100000
KEAP1   100000 perm   30 sec   (3282 perm/sec)   p_kst 7.389000e-02   p_cons 9.260000e-03   p_joint 1.420000e-02

Joint ci ratio: 1.085421e-01	ci left: 1.108174e-02	ci right 1.236238e-02	k: 1288	n:110000
Cons ci ratio: 1.229624e-01	ci left: 8.591332e-03	ci right 9.725683e-03	k: 1006	n:110000
KS ci ratio: 4.196306e-02	ci left: 7.195559e-02	ci right 7.504876e-02	k: 8084	n:110000
KEAP1   110000 perm   34 sec   (3258 perm/sec)   p_kst 7.349091e-02   p_cons 9.145455e-03   p_joint 1.170909e-02

Joint ci ratio: 9.595558e-02	ci left: 1.305805e-02	ci right 1.438227e-02	k: 1645	n:120000
Cons ci ratio: 1.176490e-01	ci left: 8.627080e-03	ci right 9.713505e-03	k: 1099	n:120000
KS ci ratio: 4.025051e-02	ci left: 7.177375e-02	ci right 7.473025e-02	k: 8789	n:120000
KEAP1   120000 perm   37 sec   (3237 perm/sec)   p_kst 7.324167e-02   p_cons 9.158333e-03   p_joint 1.370833e-02

Joint ci ratio: 9.041267e-02	ci left: 1.360898e-02	ci right 1.490513e-02	k: 1852	n:130000
Cons ci ratio: 1.133057e-01	ci left: 8.605886e-03	ci right 9.646956e-03	k: 1185	n:130000
KS ci ratio: 3.867693e-02	ci left: 7.181268e-02	ci right 7.465255e-02	k: 9519	n:130000
KEAP1   130000 perm   40 sec   (3214 perm/sec)   p_kst 7.322308e-02   p_cons 9.115385e-03   p_joint 1.424615e-02

Joint ci ratio: 9.546573e-02	ci left: 1.133157e-02	ci right 1.247450e-02	k: 1665	n:140000
Cons ci ratio: 1.093238e-01	ci left: 8.602251e-03	ci right 9.603953e-03	k: 1273	n:140000
KS ci ratio: 3.728633e-02	ci left: 7.180550e-02	ci right 7.454078e-02	k: 10243	n:140000
KEAP1   140000 perm   44 sec   (3189 perm/sec)   p_kst 7.316429e-02   p_cons 9.092857e-03   p_joint 1.189286e-02

Joint ci ratio: 9.665463e-02	ci left: 1.032212e-02	ci right 1.137692e-02	k: 1626	n:150000
Cons ci ratio: 1.053446e-01	ci left: 8.664578e-03	ci right 9.634537e-03	k: 1371	n:150000
KS ci ratio: 3.684858e-02	ci left: 6.885920e-02	ci right 7.145078e-02	k: 10522	n:150000
KEAP1   150000 perm   47 sec   (3163 perm/sec)   p_kst 7.014667e-02   p_cons 9.140000e-03   p_joint 1.084000e-02

Joint ci ratio: 9.351649e-02	ci left: 1.035424e-02	ci right 1.137610e-02	k: 1737	n:160000
Cons ci ratio: 1.026193e-01	ci left: 8.573493e-03	ci right 9.506928e-03	k: 1445	n:160000
KS ci ratio: 3.564696e-02	ci left: 6.901481e-02	ci right 7.152579e-02	k: 11242	n:160000
KEAP1   160000 perm   51 sec   (3137 perm/sec)   p_kst 7.026250e-02   p_cons 9.031250e-03   p_joint 1.085625e-02

Joint ci ratio: 8.872108e-02	ci left: 1.084898e-02	ci right 1.186191e-02	k: 1929	n:170000
Cons ci ratio: 9.960038e-02	ci left: 8.579462e-03	ci right 9.484459e-03	k: 1534	n:170000
KS ci ratio: 3.458215e-02	ci left: 6.905411e-02	ci right 7.148998e-02	k: 11945	n:170000
KEAP1   170000 perm   55 sec   (3111 perm/sec)   p_kst 7.026471e-02   p_cons 9.023529e-03   p_joint 1.134706e-02

Outputting figure to mutsig2_images.part000000000089/KEAP1.39_1895_170000_0.070265_0.0090235_0.011347.png
                gene_name: KEAP1
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.0090 
      ci_cons_bounds_left: 0.0086 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 2 percent done.
KDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
Cons ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
KS ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KDR   10000 perm   2 sec   (4404 perm/sec)   p_kst 5.247000e-01   p_cons 5.729000e-01   p_joint 6.676000e-01

Outputting figure to mutsig2_images.part000000000089/KDR.30_4191_10000_0.5247_0.5729_0.6676.png
                gene_name: KDR
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 3 percent done.
KCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
KS ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
KCNT2   10000 perm   2 sec   (4194 perm/sec)   p_kst 4.113000e-01   p_cons 9.129000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000089/KCNT2.29_3520_10000_0.4113_0.9129_0.6558.png
                gene_name: KCNT2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 5 percent done.
KCNU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
Cons ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
KS ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
KCNU1   10000 perm   2 sec   (4658 perm/sec)   p_kst 5.020000e-02   p_cons 4.876000e-01   p_joint 1.346000e-01

Joint ci ratio: 8.013786e-02	ci left: 1.025519e-01	ci right 1.111628e-01	k: 2136	n:20000
Cons ci ratio: 2.856077e-02	ci left: 4.780512e-01	ci right 4.919532e-01	k: 9700	n:20000
KS ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
KCNU1   20000 perm   5 sec   (4303 perm/sec)   p_kst 4.550000e-02   p_cons 4.850000e-01   p_joint 1.068000e-01

Joint ci ratio: 7.114244e-02	ci left: 8.862119e-02	ci right 9.519143e-02	k: 2756	n:30000
Cons ci ratio: 2.308051e-02	ci left: 4.844943e-01	ci right 4.958409e-01	k: 14705	n:30000
KS ci ratio: 1.016078e-01	ci left: 4.486009e-02	ci right 4.969474e-02	k: 1417	n:30000
KCNU1   30000 perm   7 sec   (4156 perm/sec)   p_kst 4.723333e-02   p_cons 4.901667e-01   p_joint 9.186667e-02

Joint ci ratio: 6.621904e-02	ci left: 7.787645e-02	ci right 8.323463e-02	k: 3221	n:40000
Cons ci ratio: 2.124160e-02	ci left: 4.549565e-01	ci right 4.647494e-01	k: 18394	n:40000
KS ci ratio: 8.552353e-02	ci left: 4.776195e-02	ci right 5.205369e-02	k: 1995	n:40000
KCNU1   40000 perm   10 sec   (4080 perm/sec)   p_kst 4.987500e-02   p_cons 4.598500e-01   p_joint 8.052500e-02

Outputting figure to mutsig2_images.part000000000089/KCNU1.20_3558_40000_0.049875_0.45985_0.080525.png
                gene_name: KCNU1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 7 percent done.
KDM5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
KDM5A   10000 perm   2 sec   (4764 perm/sec)   p_kst 3.451000e-01   p_cons 7.740000e-01   p_joint 4.629000e-01

Outputting figure to mutsig2_images.part000000000089/KDM5A.17_5185_10000_0.3451_0.774_0.4629.png
                gene_name: KDM5A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 8 percent done.
KEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
Cons ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
KS ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
KEL   10000 perm   2 sec   (5500 perm/sec)   p_kst 2.319000e-01   p_cons 3.909000e-01   p_joint 3.441000e-01

Outputting figure to mutsig2_images.part000000000089/KEL.14_2275_10000_0.2319_0.3909_0.3441.png
                gene_name: KEL
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 10 percent done.
KCNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
Cons ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
KS ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
KCNK2   10000 perm   2 sec   (5834 perm/sec)   p_kst 4.340000e-02   p_cons 2.330000e-01   p_joint 1.106000e-01

Joint ci ratio: 9.153144e-02	ci left: 8.014239e-02	ci right 8.787906e-02	k: 1679	n:20000
Cons ci ratio: 5.239029e-02	ci left: 2.129378e-01	ci right 2.244440e-01	k: 4373	n:20000
KS ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
KCNK2   20000 perm   4 sec   (5315 perm/sec)   p_kst 4.375000e-02   p_cons 2.186500e-01   p_joint 8.395000e-02

Joint ci ratio: 7.442972e-02	ci left: 8.147463e-02	ci right 8.780608e-02	k: 2538	n:30000
Cons ci ratio: 4.254847e-02	ci left: 2.158192e-01	ci right 2.252350e-01	k: 6615	n:30000
KS ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
KCNK2   30000 perm   6 sec   (5101 perm/sec)   p_kst 4.386667e-02   p_cons 2.205000e-01   p_joint 8.460000e-02

Joint ci ratio: 6.878266e-02	ci left: 7.251104e-02	ci right 7.770085e-02	k: 3003	n:40000
Cons ci ratio: 3.676081e-02	ci left: 2.172646e-01	ci right 2.254259e-01	k: 8853	n:40000
KS ci ratio: 9.320256e-02	ci left: 4.037279e-02	ci right 4.434399e-02	k: 1693	n:40000
KCNK2   40000 perm   8 sec   (4951 perm/sec)   p_kst 4.232500e-02   p_cons 2.213250e-01   p_joint 7.507500e-02

Outputting figure to mutsig2_images.part000000000089/KCNK2.13_1352_40000_0.042325_0.22132_0.075075.png
                gene_name: KCNK2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 11 percent done.
KDM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KDM5C   10000 perm   2 sec   (4714 perm/sec)   p_kst 1.059000e-01   p_cons 4.160000e-02   p_joint 2.910000e-02

Joint ci ratio: 1.318881e-01	ci left: 3.950386e-02	ci right 4.513019e-02	k: 845	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
KDM5C   20000 perm   5 sec   (4289 perm/sec)   p_kst 1.041000e-01   p_cons 4.160000e-02   p_joint 4.225000e-02

Joint ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
Cons ci ratio: 1.065093e-01	ci left: 4.089459e-02	ci right 4.552773e-02	k: 1295	n:30000
KS ci ratio: 6.793326e-02	ci left: 9.649612e-02	ci right 1.033149e-01	k: 2996	n:30000
KDM5C   30000 perm   7 sec   (4108 perm/sec)   p_kst 9.986667e-02   p_cons 4.316667e-02   p_joint 4.933333e-02

Joint ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
Cons ci ratio: 9.179683e-02	ci left: 4.159509e-02	ci right 4.562151e-02	k: 1743	n:40000
KS ci ratio: 5.704838e-02	ci left: 1.025551e-01	ci right 1.086023e-01	k: 4222	n:40000
KDM5C   40000 perm   10 sec   (3982 perm/sec)   p_kst 1.055500e-01   p_cons 4.357500e-02   p_joint 4.525000e-02

Outputting figure to mutsig2_images.part000000000089/KDM5C.12_4885_40000_0.10555_0.043575_0.04525.png
                gene_name: KDM5C
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 13 percent done.
KCNK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
Cons ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
KCNK10   10000 perm   2 sec   (5931 perm/sec)   p_kst 5.697000e-01   p_cons 2.629000e-01   p_joint 5.349000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK10.11_1757_10000_0.5697_0.2629_0.5349.png
                gene_name: KCNK10
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 15 percent done.
KCNK18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
Cons ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
KS ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
KCNK18   10000 perm   2 sec   (6581 perm/sec)   p_kst 2.739000e-01   p_cons 2.751000e-01   p_joint 3.139000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK18.11_1166_10000_0.2739_0.2751_0.3139.png
                gene_name: KCNK18
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 16 percent done.
KCNMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
KCNMA1   10000 perm   2 sec   (5250 perm/sec)   p_kst 1.449000e-01   p_cons 1.725000e-01   p_joint 1.702000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMA1.11_3995_10000_0.1449_0.1725_0.1702.png
                gene_name: KCNMA1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 18 percent done.
KCTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
Cons ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
KS ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
KCTD3   10000 perm   2 sec   (5525 perm/sec)   p_kst 3.622000e-01   p_cons 9.683000e-01   p_joint 5.509000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD3.11_2520_10000_0.3622_0.9683_0.5509.png
                gene_name: KCTD3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
KDM3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
Cons ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
KS ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
KDM3B   10000 perm   2 sec   (4936 perm/sec)   p_kst 1.978000e-01   p_cons 2.340000e-02   p_joint 4.120000e-02

Joint ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
Cons ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
KS ci ratio: 5.543648e-02	ci left: 1.944258e-01	ci right 2.055615e-01	k: 3999	n:20000
KDM3B   20000 perm   4 sec   (4458 perm/sec)   p_kst 1.999500e-01   p_cons 2.445000e-02   p_joint 4.825000e-02

Joint ci ratio: 9.696037e-02	ci left: 4.915615e-02	ci right 5.419779e-02	k: 1549	n:30000
Cons ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
KS ci ratio: 4.525917e-02	ci left: 1.954862e-01	ci right 2.045720e-01	k: 6000	n:30000
KDM3B   30000 perm   7 sec   (4282 perm/sec)   p_kst 2.000000e-01   p_cons 2.443333e-02   p_joint 5.163333e-02

Joint ci ratio: 7.708395e-02	ci left: 5.837946e-02	ci right 6.308456e-02	k: 2428	n:40000
Cons ci ratio: 1.245902e-01	ci left: 2.264346e-02	ci right 2.567616e-02	k: 965	n:40000
KS ci ratio: 3.912946e-02	ci left: 1.966354e-01	ci right 2.045081e-01	k: 8022	n:40000
KDM3B   40000 perm   10 sec   (4168 perm/sec)   p_kst 2.005500e-01   p_cons 2.412500e-02   p_joint 6.070000e-02

Joint ci ratio: 8.314805e-02	ci left: 4.078763e-02	ci right 4.434573e-02	k: 2127	n:50000
Cons ci ratio: 1.135010e-01	ci left: 2.197601e-02	ci right 2.463973e-02	k: 1164	n:50000
KS ci ratio: 3.493695e-02	ci left: 1.976140e-01	ci right 2.046607e-01	k: 10056	n:50000
KDM3B   50000 perm   12 sec   (4078 perm/sec)   p_kst 2.011200e-01   p_cons 2.328000e-02   p_joint 4.254000e-02

Joint ci ratio: 8.198886e-02	ci left: 3.519329e-02	ci right 3.821840e-02	k: 2201	n:60000
Cons ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
KS ci ratio: 3.184573e-02	ci left: 1.983960e-01	ci right 2.048329e-01	k: 12096	n:60000
KDM3B   60000 perm   15 sec   (3998 perm/sec)   p_kst 2.016000e-01   p_cons 2.313333e-02   p_joint 3.668333e-02

Joint ci ratio: 6.827694e-02	ci left: 4.343388e-02	ci right 4.651826e-02	k: 3147	n:70000
Cons ci ratio: 9.628938e-02	ci left: 2.201377e-02	ci right 2.425457e-02	k: 1618	n:70000
KS ci ratio: 2.941449e-02	ci left: 1.993862e-01	ci right 2.053528e-01	k: 14165	n:70000
KDM3B   70000 perm   18 sec   (3930 perm/sec)   p_kst 2.023571e-01   p_cons 2.311429e-02   p_joint 4.495714e-02

Outputting figure to mutsig2_images.part000000000089/KDM3B.11_5382_70000_0.20236_0.023114_0.044957.png
                gene_name: KDM3B
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 21 percent done.
KCNS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
KS ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KCNS2   10000 perm   2 sec   (5762 perm/sec)   p_kst 3.600000e-02   p_cons 2.266000e-01   p_joint 3.730000e-02

Joint ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
Cons ci ratio: 5.093209e-02	ci left: 2.226463e-01	ci right 2.343327e-01	k: 4569	n:20000
KS ci ratio: 1.440565e-01	ci left: 3.312301e-02	ci right 3.831311e-02	k: 713	n:20000
KCNS2   20000 perm   4 sec   (5206 perm/sec)   p_kst 3.565000e-02   p_cons 2.284500e-01   p_joint 4.945000e-02

Joint ci ratio: 9.478754e-02	ci left: 5.137128e-02	ci right 5.651553e-02	k: 1617	n:30000
Cons ci ratio: 4.175580e-02	ci left: 2.223029e-01	ci right 2.318167e-01	k: 6811	n:30000
KS ci ratio: 1.190713e-01	ci left: 3.278697e-02	ci right 3.697040e-02	k: 1045	n:30000
KCNS2   30000 perm   6 sec   (4994 perm/sec)   p_kst 3.483333e-02   p_cons 2.270333e-01   p_joint 5.390000e-02

Joint ci ratio: 6.731583e-02	ci left: 7.551323e-02	ci right 8.079820e-02	k: 3125	n:40000
Cons ci ratio: 3.612477e-02	ci left: 2.232998e-01	ci right 2.315398e-01	k: 9096	n:40000
KS ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
KCNS2   40000 perm   8 sec   (4846 perm/sec)   p_kst 3.490000e-02   p_cons 2.274000e-01   p_joint 7.812500e-02

Joint ci ratio: 7.166498e-02	ci left: 5.443305e-02	ci right 5.849864e-02	k: 2822	n:50000
Cons ci ratio: 3.230044e-02	ci left: 2.238512e-01	ci right 2.312204e-01	k: 11376	n:50000
KS ci ratio: 9.188750e-02	ci left: 3.350395e-02	ci right 3.675031e-02	k: 1755	n:50000
KCNS2   50000 perm   11 sec   (4737 perm/sec)   p_kst 3.510000e-02   p_cons 2.275200e-01   p_joint 5.644000e-02

Outputting figure to mutsig2_images.part000000000089/KCNS2.10_1438_50000_0.0351_0.22752_0.05644.png
                gene_name: KCNS2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 23 percent done.
KDM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 1.912193e-02	ci left: 7.999380e-01	ci right 8.154824e-01	k: 8078	n:10000
KDM5B   10000 perm   2 sec   (5011 perm/sec)   p_kst 8.078000e-01   p_cons 2.570000e-02   p_joint 1.680000e-01

Joint ci ratio: 6.680972e-02	ci left: 1.419218e-01	ci right 1.517811e-01	k: 2936	n:20000
Cons ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
KS ci ratio: 1.294978e-02	ci left: 8.154639e-01	ci right 8.261427e-01	k: 16417	n:20000
KDM5B   20000 perm   4 sec   (4571 perm/sec)   p_kst 8.208500e-01   p_cons 3.210000e-02   p_joint 1.468000e-01

Joint ci ratio: 5.746007e-02	ci left: 1.304275e-01	ci right 1.381768e-01	k: 4028	n:30000
Cons ci ratio: 1.250139e-01	ci left: 2.974625e-02	ci right 3.374511e-02	k: 951	n:30000
KS ci ratio: 1.027434e-02	ci left: 8.248257e-01	ci right 8.333772e-01	k: 24874	n:30000
KDM5B   30000 perm   7 sec   (4412 perm/sec)   p_kst 8.291333e-01   p_cons 3.170000e-02   p_joint 1.342667e-01

Joint ci ratio: 5.036476e-02	ci left: 1.282025e-01	ci right 1.348511e-01	k: 5260	n:40000
Cons ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
KS ci ratio: 8.876836e-03	ci left: 8.260807e-01	ci right 8.334713e-01	k: 33192	n:40000
KDM5B   40000 perm   9 sec   (4304 perm/sec)   p_kst 8.298000e-01   p_cons 3.202500e-02   p_joint 1.315000e-01

Joint ci ratio: 4.624232e-02	ci left: 1.227466e-01	ci right 1.285769e-01	k: 6282	n:50000
Cons ci ratio: 9.717381e-02	ci left: 2.998627e-02	ci right 3.306843e-02	k: 1575	n:50000
KS ci ratio: 7.959878e-03	ci left: 8.257513e-01	ci right 8.323704e-01	k: 41454	n:50000
KDM5B   50000 perm   12 sec   (4209 perm/sec)   p_kst 8.290800e-01   p_cons 3.150000e-02   p_joint 1.256400e-01

Outputting figure to mutsig2_images.part000000000089/KDM5B.10_4743_50000_0.82908_0.0315_0.12564.png
                gene_name: KDM5B
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
KCNN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
Cons ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KCNN3   10000 perm   2 sec   (6245 perm/sec)   p_kst 1.291000e-01   p_cons 5.444000e-01   p_joint 2.576000e-01

Joint ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
Cons ci ratio: 2.498228e-02	ci left: 5.448256e-01	ci right 5.586594e-01	k: 11035	n:20000
KS ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KCNN3   20000 perm   4 sec   (5602 perm/sec)   p_kst 1.300000e-01   p_cons 5.517500e-01   p_joint 2.018000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN3.9_2250_20000_0.13_0.55175_0.2018.png
                gene_name: KCNN3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
KCNQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KCNQ2   10000 perm   2 sec   (5670 perm/sec)   p_kst 1.340000e-01   p_cons 1.030000e-02   p_joint 3.570000e-02

Joint ci ratio: 2.061923e-01	ci left: 1.591794e-02	ci right 1.962416e-02	k: 354	n:20000
Cons ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
KS ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
KCNQ2   20000 perm   4 sec   (5120 perm/sec)   p_kst 1.340000e-01   p_cons 1.050000e-02   p_joint 1.770000e-02

Joint ci ratio: 2.113803e-01	ci left: 1.013476e-02	ci right 1.256126e-02	k: 339	n:30000
Cons ci ratio: 2.233110e-01	ci left: 9.030982e-03	ci right 1.133203e-02	k: 304	n:30000
KS ci ratio: 5.736144e-02	ci left: 1.308226e-01	ci right 1.385816e-01	k: 4040	n:30000
KCNQ2   30000 perm   6 sec   (4920 perm/sec)   p_kst 1.346667e-01   p_cons 1.013333e-02   p_joint 1.130000e-02

Joint ci ratio: 1.590960e-01	ci left: 1.375956e-02	ci right 1.616161e-02	k: 597	n:40000
Cons ci ratio: 1.911895e-01	ci left: 9.405173e-03	ci right 1.141686e-02	k: 415	n:40000
KS ci ratio: 4.823280e-02	ci left: 1.382960e-01	ci right 1.451561e-01	k: 5668	n:40000
KCNQ2   40000 perm   8 sec   (4801 perm/sec)   p_kst 1.417000e-01   p_cons 1.037500e-02   p_joint 1.492500e-02

Joint ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
Cons ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
KS ci ratio: 4.352530e-02	ci left: 1.365336e-01	ci right 1.426283e-01	k: 6978	n:50000
KCNQ2   50000 perm   11 sec   (4703 perm/sec)   p_kst 1.395600e-01   p_cons 9.960000e-03   p_joint 3.048000e-02

Joint ci ratio: 1.080898e-01	ci left: 2.028938e-02	ci right 2.262389e-02	k: 1286	n:60000
Cons ci ratio: 1.580369e-01	ci left: 9.347386e-03	ci right 1.096719e-02	k: 608	n:60000
KS ci ratio: 3.968293e-02	ci left: 1.371005e-01	ci right 1.426677e-01	k: 8392	n:60000
KCNQ2   60000 perm   13 sec   (4609 perm/sec)   p_kst 1.398667e-01   p_cons 1.013333e-02   p_joint 2.143333e-02

Joint ci ratio: 1.049824e-01	ci left: 1.850240e-02	ci right 2.056627e-02	k: 1366	n:70000
Cons ci ratio: 1.477385e-01	ci left: 9.221087e-03	ci right 1.070567e-02	k: 696	n:70000
KS ci ratio: 3.671494e-02	ci left: 1.374657e-01	ci right 1.426213e-01	k: 9802	n:70000
KCNQ2   70000 perm   15 sec   (4525 perm/sec)   p_kst 1.400286e-01   p_cons 9.942857e-03   p_joint 1.951429e-02

Joint ci ratio: 1.047627e-01	ci left: 1.629816e-02	ci right 1.811209e-02	k: 1375	n:80000
Cons ci ratio: 1.385991e-01	ci left: 9.213441e-03	ci right 1.059745e-02	k: 791	n:80000
KS ci ratio: 3.429287e-02	ci left: 1.379871e-01	ci right 1.428140e-01	k: 11231	n:80000
KCNQ2   80000 perm   18 sec   (4448 perm/sec)   p_kst 1.403875e-01   p_cons 9.887500e-03   p_joint 1.718750e-02

Joint ci ratio: 8.948265e-02	ci left: 1.994273e-02	ci right 2.182166e-02	k: 1878	n:90000
Cons ci ratio: 1.306726e-01	ci left: 9.252707e-03	ci right 1.055695e-02	k: 890	n:90000
KS ci ratio: 3.237189e-02	ci left: 1.378274e-01	ci right 1.423736e-01	k: 12608	n:90000
KCNQ2   90000 perm   21 sec   (4376 perm/sec)   p_kst 1.400889e-01   p_cons 9.888889e-03   p_joint 2.086667e-02

Joint ci ratio: 8.810792e-02	ci left: 1.855410e-02	ci right 2.027393e-02	k: 1940	n:100000
Cons ci ratio: 1.239037e-01	ci left: 9.295619e-03	ci right 1.053306e-02	k: 990	n:100000
KS ci ratio: 3.065600e-02	ci left: 1.383715e-01	ci right 1.426894e-01	k: 14052	n:100000
KCNQ2   100000 perm   23 sec   (4306 perm/sec)   p_kst 1.405200e-01   p_cons 9.900000e-03   p_joint 1.940000e-02

Joint ci ratio: 8.055689e-02	ci left: 2.022315e-02	ci right 2.192950e-02	k: 2317	n:110000
Cons ci ratio: 1.185834e-01	ci left: 9.252739e-03	ci right 1.042787e-02	k: 1081	n:110000
KS ci ratio: 2.928813e-02	ci left: 1.379906e-01	ci right 1.421011e-01	k: 15404	n:110000
KCNQ2   110000 perm   26 sec   (4239 perm/sec)   p_kst 1.400364e-01   p_cons 9.827273e-03   p_joint 2.106364e-02

Joint ci ratio: 8.393894e-02	ci left: 1.710020e-02	ci right 1.860657e-02	k: 2141	n:120000
Cons ci ratio: 1.141897e-01	ci left: 9.169369e-03	ci right 1.028785e-02	k: 1166	n:120000
KS ci ratio: 2.806695e-02	ci left: 1.378591e-01	ci right 1.417917e-01	k: 16778	n:120000
KCNQ2   120000 perm   29 sec   (4173 perm/sec)   p_kst 1.398167e-01   p_cons 9.716667e-03   p_joint 1.784167e-02

Joint ci ratio: 8.273040e-02	ci left: 1.627409e-02	ci right 1.768604e-02	k: 2206	n:130000
Cons ci ratio: 1.099407e-01	ci left: 9.151887e-03	ci right 1.022400e-02	k: 1258	n:130000
KS ci ratio: 2.697643e-02	ci left: 1.378426e-01	ci right 1.416196e-01	k: 18164	n:130000
KCNQ2   130000 perm   32 sec   (4109 perm/sec)   p_kst 1.397231e-01   p_cons 9.676923e-03   p_joint 1.696923e-02

Joint ci ratio: 7.902658e-02	ci left: 1.658842e-02	ci right 1.796025e-02	k: 2417	n:140000
Cons ci ratio: 1.058173e-01	ci left: 9.193206e-03	ci right 1.022725e-02	k: 1358	n:140000
KS ci ratio: 2.598380e-02	ci left: 1.380158e-01	ci right 1.416563e-01	k: 19576	n:140000
KCNQ2   140000 perm   35 sec   (4048 perm/sec)   p_kst 1.398286e-01   p_cons 9.700000e-03   p_joint 1.726429e-02

Joint ci ratio: 7.730459e-02	ci left: 1.620140e-02	ci right 1.751070e-02	k: 2527	n:150000
Cons ci ratio: 1.020197e-01	ci left: 9.249161e-03	ci right 1.024993e-02	k: 1461	n:150000
KS ci ratio: 2.508075e-02	ci left: 1.382875e-01	ci right 1.418065e-01	k: 21006	n:150000
KCNQ2   150000 perm   38 sec   (3987 perm/sec)   p_kst 1.400400e-01   p_cons 9.740000e-03   p_joint 1.684667e-02

Joint ci ratio: 8.129135e-02	ci left: 1.374232e-02	ci right 1.491287e-02	k: 2291	n:160000
Cons ci ratio: 9.901985e-02	ci left: 9.219440e-03	ci right 1.018595e-02	k: 1551	n:160000
KS ci ratio: 2.426386e-02	ci left: 1.385457e-01	ci right 1.419548e-01	k: 22439	n:160000
KCNQ2   160000 perm   41 sec   (3929 perm/sec)   p_kst 1.402438e-01   p_cons 9.693750e-03   p_joint 1.431875e-02

Outputting figure to mutsig2_images.part000000000089/KCNQ2.9_2751_160000_0.14024_0.0096937_0.014319.png
                gene_name: KCNQ2
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 28 percent done.
KCNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
Cons ci ratio: 3.660682e-02	ci left: 5.242643e-01	ci right 5.439159e-01	k: 5341	n:10000
KS ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
KCNN2   10000 perm   2 sec   (5785 perm/sec)   p_kst 6.003000e-01   p_cons 5.341000e-01   p_joint 7.241000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN2.8_1772_10000_0.6003_0.5341_0.7241.png
                gene_name: KCNN2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 30 percent done.
KCNV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
Cons ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
KS ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KCNV1   10000 perm   2 sec   (6280 perm/sec)   p_kst 8.183000e-01   p_cons 4.269000e-01   p_joint 8.723000e-01

Outputting figure to mutsig2_images.part000000000089/KCNV1.8_1515_10000_0.8183_0.4269_0.8723.png
                gene_name: KCNV1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 31 percent done.
KCNK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
Cons ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
KS ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
KCNK13   10000 perm   2 sec   (6062 perm/sec)   p_kst 5.527000e-01   p_cons 5.999000e-01   p_joint 8.928000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK13.7_1235_10000_0.5527_0.5999_0.8928.png
                gene_name: KCNK13
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 33 percent done.
KCTD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KCTD8   10000 perm   2 sec   (6630 perm/sec)   p_kst 1.130000e-02   p_cons 5.480000e-02   p_joint 8.600000e-03

Joint ci ratio: 3.048355e-01	ci left: 6.950867e-03	ci right 9.495224e-03	k: 163	n:20000
Cons ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
KS ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
KCTD8   20000 perm   3 sec   (5905 perm/sec)   p_kst 1.080000e-02   p_cons 5.325000e-02   p_joint 8.150000e-03

Joint ci ratio: 1.979722e-01	ci left: 1.162205e-02	ci right 1.420689e-02	k: 386	n:30000
Cons ci ratio: 9.531799e-02	ci left: 5.081738e-02	ci right 5.593622e-02	k: 1600	n:30000
KS ci ratio: 2.126491e-01	ci left: 1.000844e-02	ci right 1.242095e-02	k: 335	n:30000
KCTD8   30000 perm   5 sec   (5611 perm/sec)   p_kst 1.116667e-02   p_cons 5.333333e-02   p_joint 1.286667e-02

Joint ci ratio: 2.001318e-01	ci left: 8.548862e-03	ci right 1.047335e-02	k: 379	n:40000
Cons ci ratio: 8.339056e-02	ci left: 5.016282e-02	ci right 5.455245e-02	k: 2093	n:40000
KS ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
KCTD8   40000 perm   7 sec   (5428 perm/sec)   p_kst 1.130000e-02   p_cons 5.232500e-02   p_joint 9.475000e-03

Joint ci ratio: 1.847859e-01	ci left: 8.095389e-03	ci right 9.762375e-03	k: 445	n:50000
Cons ci ratio: 7.453438e-02	ci left: 5.046285e-02	ci right 5.438931e-02	k: 2620	n:50000
KS ci ratio: 1.613990e-01	ci left: 1.071829e-02	ci right 1.261904e-02	k: 582	n:50000
KCTD8   50000 perm   9 sec   (5283 perm/sec)   p_kst 1.164000e-02   p_cons 5.240000e-02   p_joint 8.900000e-03

Joint ci ratio: 1.866184e-01	ci left: 6.618540e-03	ci right 7.996428e-03	k: 437	n:60000
Cons ci ratio: 6.788335e-02	ci left: 5.085993e-02	ci right 5.445016e-02	k: 3158	n:60000
KS ci ratio: 1.480448e-01	ci left: 1.069435e-02	ci right 1.242005e-02	k: 692	n:60000
KCTD8   60000 perm   12 sec   (5154 perm/sec)   p_kst 1.153333e-02   p_cons 5.263333e-02   p_joint 7.283333e-03

Joint ci ratio: 1.856532e-01	ci left: 5.740888e-03	ci right 6.929163e-03	k: 442	n:70000
Cons ci ratio: 6.295158e-02	ci left: 5.083107e-02	ci right 5.414901e-02	k: 3673	n:70000
KS ci ratio: 1.377977e-01	ci left: 1.064053e-02	ci right 1.222893e-02	k: 799	n:70000
KCTD8   70000 perm   14 sec   (5039 perm/sec)   p_kst 1.141429e-02   p_cons 5.247143e-02   p_joint 6.314286e-03

Joint ci ratio: 1.814518e-01	ci left: 5.273597e-03	ci right 6.337722e-03	k: 463	n:80000
Cons ci ratio: 5.914540e-02	ci left: 5.050845e-02	ci right 5.359914e-02	k: 4163	n:80000
KS ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
KCTD8   80000 perm   16 sec   (4946 perm/sec)   p_kst 1.146250e-02   p_cons 5.203750e-02   p_joint 5.787500e-03

Joint ci ratio: 1.881469e-01	ci left: 4.348330e-03	ci right 5.261815e-03	k: 431	n:90000
Cons ci ratio: 5.559094e-02	ci left: 5.089825e-02	ci right 5.381957e-02	k: 4711	n:90000
KS ci ratio: 1.210258e-01	ci left: 1.082443e-02	ci right 1.222954e-02	k: 1036	n:90000
KCTD8   90000 perm   19 sec   (4848 perm/sec)   p_kst 1.151111e-02   p_cons 5.234444e-02   p_joint 4.788889e-03

Joint ci ratio: 1.805829e-01	ci left: 4.266408e-03	ci right 5.122710e-03	k: 468	n:100000
Cons ci ratio: 5.269869e-02	ci left: 5.104664e-02	ci right 5.381939e-02	k: 5242	n:100000
KS ci ratio: 1.149273e-01	ci left: 1.083866e-02	ci right 1.216990e-02	k: 1149	n:100000
KCTD8   100000 perm   21 sec   (4761 perm/sec)   p_kst 1.149000e-02   p_cons 5.242000e-02   p_joint 4.680000e-03

Joint ci ratio: 1.915982e-01	ci left: 3.427682e-03	ci right 4.162498e-03	k: 416	n:110000
Cons ci ratio: 5.030750e-02	ci left: 5.099163e-02	ci right 5.363204e-02	k: 5753	n:110000
KS ci ratio: 1.095352e-01	ci left: 1.087829e-02	ci right 1.214766e-02	k: 1265	n:110000
KCTD8   110000 perm   23 sec   (4686 perm/sec)   p_kst 1.150000e-02   p_cons 5.230000e-02   p_joint 3.781818e-03

Joint ci ratio: 1.395413e-01	ci left: 6.077252e-03	ci right 6.996840e-03	k: 783	n:120000
Cons ci ratio: 4.815805e-02	ci left: 5.106351e-02	ci right 5.359151e-02	k: 6278	n:120000
KS ci ratio: 1.054174e-01	ci left: 1.079078e-02	ci right 1.199967e-02	k: 1366	n:120000
KCTD8   120000 perm   26 sec   (4611 perm/sec)   p_kst 1.138333e-02   p_cons 5.231667e-02   p_joint 6.525000e-03

Joint ci ratio: 1.433018e-01	ci left: 5.312812e-03	ci right 6.140239e-03	k: 743	n:130000
Cons ci ratio: 4.634882e-02	ci left: 5.094378e-02	ci right 5.336856e-02	k: 6779	n:130000
KS ci ratio: 1.013828e-01	ci left: 1.079249e-02	ci right 1.195254e-02	k: 1477	n:130000
KCTD8   130000 perm   29 sec   (4526 perm/sec)   p_kst 1.136154e-02   p_cons 5.214615e-02   p_joint 5.715385e-03

Joint ci ratio: 1.386323e-01	ci left: 5.284759e-03	ci right 6.078782e-03	k: 794	n:140000
Cons ci ratio: 4.461947e-02	ci left: 5.108298e-02	ci right 5.342133e-02	k: 7314	n:140000
KS ci ratio: 9.743805e-02	ci left: 1.087139e-02	ci right 1.199184e-02	k: 1599	n:140000
KCTD8   140000 perm   31 sec   (4452 perm/sec)   p_kst 1.142143e-02   p_cons 5.224286e-02   p_joint 5.671429e-03

Joint ci ratio: 1.387465e-01	ci left: 4.925943e-03	ci right 5.666711e-03	k: 793	n:150000
Cons ci ratio: 4.312248e-02	ci left: 5.108630e-02	ci right 5.334438e-02	k: 7831	n:150000
KS ci ratio: 9.444911e-02	ci left: 1.081680e-02	ci right 1.189554e-02	k: 1702	n:150000
KCTD8   150000 perm   34 sec   (4381 perm/sec)   p_kst 1.134667e-02   p_cons 5.220667e-02   p_joint 5.286667e-03

Joint ci ratio: 1.366244e-01	ci left: 4.768912e-03	ci right 5.474204e-03	k: 818	n:160000
Cons ci ratio: 4.170088e-02	ci left: 5.124506e-02	ci right 5.343369e-02	k: 8373	n:160000
KS ci ratio: 9.177074e-02	ci left: 1.075729e-02	ci right 1.179804e-02	k: 1803	n:160000
KCTD8   160000 perm   37 sec   (4316 perm/sec)   p_kst 1.126875e-02   p_cons 5.233125e-02   p_joint 5.112500e-03

Joint ci ratio: 1.195160e-01	ci left: 5.912259e-03	ci right 6.669432e-03	k: 1068	n:170000
Cons ci ratio: 4.040880e-02	ci left: 5.139205e-02	ci right 5.351736e-02	k: 8916	n:170000
KS ci ratio: 8.923695e-02	ci left: 1.072242e-02	ci right 1.172965e-02	k: 1907	n:170000
KCTD8   170000 perm   40 sec   (4254 perm/sec)   p_kst 1.121765e-02   p_cons 5.244706e-02   p_joint 6.282353e-03

Joint ci ratio: 1.184824e-01	ci left: 5.686174e-03	ci right 6.407652e-03	k: 1087	n:180000
Cons ci ratio: 3.929343e-02	ci left: 5.136402e-02	ci right 5.342821e-02	k: 9430	n:180000
KS ci ratio: 8.659787e-02	ci left: 1.076788e-02	ci right 1.174796e-02	k: 2025	n:180000
KCTD8   180000 perm   43 sec   (4194 perm/sec)   p_kst 1.125000e-02   p_cons 5.238889e-02   p_joint 6.038889e-03

Joint ci ratio: 1.157513e-01	ci left: 5.652563e-03	ci right 6.352112e-03	k: 1139	n:190000
Cons ci ratio: 3.819270e-02	ci left: 5.152742e-02	ci right 5.353889e-02	k: 9980	n:190000
KS ci ratio: 8.435914e-02	ci left: 1.076257e-02	ci right 1.171559e-02	k: 2134	n:190000
KCTD8   190000 perm   46 sec   (4133 perm/sec)   p_kst 1.123158e-02   p_cons 5.252632e-02   p_joint 5.994737e-03

Joint ci ratio: 9.444493e-02	ci left: 8.136479e-03	ci right 8.947862e-03	k: 1707	n:200000
Cons ci ratio: 3.718703e-02	ci left: 5.165538e-02	ci right 5.361761e-02	k: 10526	n:200000
KS ci ratio: 8.217449e-02	ci left: 1.078747e-02	ci right 1.171678e-02	k: 2249	n:200000
KCTD8   200000 perm   49 sec   (4077 perm/sec)   p_kst 1.124500e-02   p_cons 5.263000e-02   p_joint 8.535000e-03

Outputting figure to mutsig2_images.part000000000089/KCTD8.7_1430_200000_0.011245_0.05263_0.008535.png
                gene_name: KCTD8
               theta_stop: 0.094 
                    nperm: 200000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0089 

Current progress: 34 percent done.
KDM3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
Cons ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
KS ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
KDM3A   10000 perm   2 sec   (4910 perm/sec)   p_kst 3.350000e-01   p_cons 1.647000e-01   p_joint 1.854000e-01

Outputting figure to mutsig2_images.part000000000089/KDM3A.7_4066_10000_0.335_0.1647_0.1854.png
                gene_name: KDM3A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 36 percent done.
KDM4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
Cons ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
KS ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
KDM4C   10000 perm   2 sec   (5819 perm/sec)   p_kst 2.596000e-01   p_cons 5.849000e-01   p_joint 4.433000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4C.7_3497_10000_0.2596_0.5849_0.4433.png
                gene_name: KDM4C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 38 percent done.
KDM6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
Cons ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
KS ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KDM6B   10000 perm   2 sec   (5089 perm/sec)   p_kst 3.453000e-01   p_cons 8.777000e-01   p_joint 7.114000e-01

Outputting figure to mutsig2_images.part000000000089/KDM6B.7_5125_10000_0.3453_0.8777_0.7114.png
                gene_name: KDM6B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 39 percent done.
KHDRBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
Cons ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
KS ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
KHDRBS2   10000 perm   2 sec   (6314 perm/sec)   p_kst 2.344000e-01   p_cons 2.834000e-01   p_joint 2.584000e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS2.7_1086_10000_0.2344_0.2834_0.2584.png
                gene_name: KHDRBS2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 41 percent done.
KDM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
Cons ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
KDM1B   10000 perm   2 sec   (6216 perm/sec)   p_kst 4.578000e-01   p_cons 2.890000e-02   p_joint 1.409000e-01

Joint ci ratio: 6.980422e-02	ci left: 1.314252e-01	ci right 1.409808e-01	k: 2723	n:20000
Cons ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
KS ci ratio: 3.041038e-02	ci left: 4.468323e-01	ci right 4.606811e-01	k: 9075	n:20000
KDM1B   20000 perm   4 sec   (5603 perm/sec)   p_kst 4.537500e-01   p_cons 2.870000e-02   p_joint 1.361500e-01

Joint ci ratio: 6.470615e-02	ci left: 1.054620e-01	ci right 1.125473e-01	k: 3269	n:30000
Cons ci ratio: 1.336716e-01	ci left: 2.600110e-02	ci right 2.975775e-02	k: 835	n:30000
KS ci ratio: 2.490510e-02	ci left: 4.466228e-01	ci right 4.579198e-01	k: 13568	n:30000
KDM1B   30000 perm   6 sec   (5345 perm/sec)   p_kst 4.522667e-01   p_cons 2.783333e-02   p_joint 1.089667e-01

Joint ci ratio: 5.223302e-02	ci left: 1.201918e-01	ci right 1.266630e-01	k: 4936	n:40000
Cons ci ratio: 1.068538e-01	ci left: 3.080812e-02	ci right 3.431018e-02	k: 1301	n:40000
KS ci ratio: 2.162288e-02	ci left: 4.461399e-01	ci right 4.559173e-01	k: 18041	n:40000
KDM1B   40000 perm   8 sec   (5185 perm/sec)   p_kst 4.510250e-01   p_cons 3.252500e-02   p_joint 1.234000e-01

Joint ci ratio: 5.014724e-02	ci left: 1.061625e-01	ci right 1.116430e-01	k: 5444	n:50000
Cons ci ratio: 9.601613e-02	ci left: 3.070894e-02	ci right 3.382567e-02	k: 1612	n:50000
KS ci ratio: 1.936547e-02	ci left: 4.460120e-01	ci right 4.547538e-01	k: 22519	n:50000
KDM1B   50000 perm   10 sec   (5056 perm/sec)   p_kst 4.503800e-01   p_cons 3.224000e-02   p_joint 1.088800e-01

Outputting figure to mutsig2_images.part000000000089/KDM1B.6_1837_50000_0.45038_0.03224_0.10888.png
                gene_name: KDM1B
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 43 percent done.
KCNK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
KCNK9   10000 perm   2 sec   (6388 perm/sec)   p_kst 2.426000e-01   p_cons 5.389000e-01   p_joint 4.277000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK9.5_1133_10000_0.2426_0.5389_0.4277.png
                gene_name: KCNK9
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 44 percent done.
KCNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
Cons ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
KS ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
KCNS3   10000 perm   2 sec   (6249 perm/sec)   p_kst 4.548000e-01   p_cons 7.518000e-01   p_joint 7.119000e-01

Outputting figure to mutsig2_images.part000000000089/KCNS3.5_1480_10000_0.4548_0.7518_0.7119.png
                gene_name: KCNS3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 46 percent done.
KDELC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
Cons ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
KS ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
KDELC1   10000 perm   2 sec   (6219 perm/sec)   p_kst 6.043000e-01   p_cons 8.702000e-01   p_joint 7.558000e-01

Outputting figure to mutsig2_images.part000000000089/KDELC1.5_1549_10000_0.6043_0.8702_0.7558.png
                gene_name: KDELC1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 48 percent done.
KDELR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
KDELR3   10000 perm   1 sec   (6894 perm/sec)   p_kst 1.143000e-01   p_cons 6.226000e-01   p_joint 1.733000e-01

Joint ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
Cons ci ratio: 2.100956e-02	ci left: 6.283840e-01	ci right 6.417767e-01	k: 12702	n:20000
KS ci ratio: 7.607298e-02	ci left: 1.127238e-01	ci right 1.216878e-01	k: 2343	n:20000
KDELR3   20000 perm   3 sec   (6180 perm/sec)   p_kst 1.171500e-01   p_cons 6.351000e-01   p_joint 1.718000e-01

Outputting figure to mutsig2_images.part000000000089/KDELR3.5_724_20000_0.11715_0.6351_0.1718.png
                gene_name: KDELR3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
KDM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
Cons ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
KDM2B   10000 perm   2 sec   (5582 perm/sec)   p_kst 3.295000e-01   p_cons 5.158000e-01   p_joint 4.599000e-01

Outputting figure to mutsig2_images.part000000000089/KDM2B.5_4192_10000_0.3295_0.5158_0.4599.png
                gene_name: KDM2B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 51 percent done.
KDM4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
KDM4D   10000 perm   1 sec   (6873 perm/sec)   p_kst 1.690000e-02   p_cons 5.492000e-01   p_joint 4.380000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 2.534801e-02	ci left: 5.376170e-01	ci right 5.514701e-01	k: 10891	n:20000
KS ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
KDM4D   20000 perm   3 sec   (6151 perm/sec)   p_kst 1.620000e-02   p_cons 5.445500e-01   p_joint 3.690000e-02

Joint ci ratio: 1.255598e-01	ci left: 2.948769e-02	ci right 3.347039e-02	k: 943	n:30000
Cons ci ratio: 2.060055e-02	ci left: 5.412127e-01	ci right 5.525116e-01	k: 16406	n:30000
KS ci ratio: 1.743706e-01	ci left: 1.512069e-02	ci right 1.804068e-02	k: 496	n:30000
KDM4D   30000 perm   5 sec   (5881 perm/sec)   p_kst 1.653333e-02   p_cons 5.468667e-01   p_joint 3.143333e-02

Joint ci ratio: 1.099928e-01	ci left: 2.907980e-02	ci right 3.248877e-02	k: 1230	n:40000
Cons ci ratio: 1.780453e-02	ci left: 5.429818e-01	ci right 5.527613e-01	k: 21915	n:40000
KS ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
KDM4D   40000 perm   7 sec   (5674 perm/sec)   p_kst 1.667500e-02   p_cons 5.478750e-01   p_joint 3.075000e-02

Joint ci ratio: 8.820492e-02	ci left: 3.632141e-02	ci right 3.969250e-02	k: 1899	n:50000
Cons ci ratio: 1.589974e-02	ci left: 5.442855e-01	ci right 5.530289e-01	k: 27433	n:50000
KS ci ratio: 1.341106e-01	ci left: 1.567226e-02	ci right 1.794434e-02	k: 839	n:50000
KDM4D   50000 perm   9 sec   (5535 perm/sec)   p_kst 1.678000e-02   p_cons 5.486600e-01   p_joint 3.798000e-02

Joint ci ratio: 8.540982e-02	ci left: 3.246620e-02	ci right 3.537911e-02	k: 2034	n:60000
Cons ci ratio: 1.448987e-02	ci left: 5.455082e-01	ci right 5.534870e-01	k: 32970	n:60000
KS ci ratio: 1.231737e-01	ci left: 1.557661e-02	ci right 1.763720e-02	k: 995	n:60000
KDM4D   60000 perm   11 sec   (5408 perm/sec)   p_kst 1.658333e-02   p_cons 5.495000e-01   p_joint 3.390000e-02

Joint ci ratio: 8.571061e-02	ci left: 2.776931e-02	ci right 3.026994e-02	k: 2030	n:70000
Cons ci ratio: 1.347516e-02	ci left: 5.435893e-01	ci right 5.509782e-01	k: 38310	n:70000
KS ci ratio: 1.142369e-01	ci left: 1.559702e-02	ci right 1.750050e-02	k: 1157	n:70000
KDM4D   70000 perm   13 sec   (5293 perm/sec)   p_kst 1.652857e-02   p_cons 5.472857e-01   p_joint 2.900000e-02

Joint ci ratio: 7.968389e-02	ci left: 2.819124e-02	ci right 3.054306e-02	k: 2348	n:80000
Cons ci ratio: 1.258197e-02	ci left: 5.447309e-01	ci right 5.516406e-01	k: 43855	n:80000
KS ci ratio: 1.055459e-01	ci left: 1.605463e-02	ci right 1.785564e-02	k: 1355	n:80000
KDM4D   80000 perm   15 sec   (5185 perm/sec)   p_kst 1.693750e-02   p_cons 5.481875e-01   p_joint 2.935000e-02

Joint ci ratio: 7.847310e-02	ci left: 2.591809e-02	ci right 2.804588e-02	k: 2427	n:90000
Cons ci ratio: 1.187622e-02	ci left: 5.443523e-01	ci right 5.508669e-01	k: 49285	n:90000
KS ci ratio: 1.029807e-01	ci left: 1.502787e-02	ci right 1.667022e-02	k: 1425	n:90000
KDM4D   90000 perm   18 sec   (5077 perm/sec)   p_kst 1.583333e-02   p_cons 5.476111e-01   p_joint 2.696667e-02

Joint ci ratio: 7.377131e-02	ci left: 2.644604e-02	ci right 2.848150e-02	k: 2745	n:100000
Cons ci ratio: 1.128001e-02	ci left: 5.439384e-01	ci right 5.501188e-01	k: 54703	n:100000
KS ci ratio: 9.783564e-02	ci left: 1.502642e-02	ci right 1.658185e-02	k: 1579	n:100000
KDM4D   100000 perm   20 sec   (4972 perm/sec)   p_kst 1.579000e-02   p_cons 5.470300e-01   p_joint 2.745000e-02

Outputting figure to mutsig2_images.part000000000089/KDM4D.5_1576_100000_0.01579_0.54703_0.02745.png
                gene_name: KDM4D
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 52 percent done.
KCNK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KCNK17   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.579000e-01   p_cons 7.950000e-01   p_joint 2.665000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK17.4_1151_10000_0.1579_0.795_0.2665.png
                gene_name: KCNK17
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 54 percent done.
KCNK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
KCNK6   10000 perm   1 sec   (7270 perm/sec)   p_kst 1.974000e-01   p_cons 7.396000e-01   p_joint 3.515000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK6.4_954_10000_0.1974_0.7396_0.3515.png
                gene_name: KCNK6
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 56 percent done.
KCNMB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
Cons ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KCNMB1   10000 perm   1 sec   (7354 perm/sec)   p_kst 1.391000e-01   p_cons 6.461000e-01   p_joint 2.396000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMB1.4_588_10000_0.1391_0.6461_0.2396.png
                gene_name: KCNMB1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 57 percent done.
KCNQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
Cons ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
KS ci ratio: 3.968308e-02	ci left: 4.839539e-01	ci right 5.036497e-01	k: 4938	n:10000
KCNQ3   10000 perm   1 sec   (6765 perm/sec)   p_kst 4.938000e-01   p_cons 5.070000e-02   p_joint 1.687000e-01

Joint ci ratio: 5.839100e-02	ci left: 1.785028e-01	ci right 1.892893e-01	k: 3677	n:20000
Cons ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
KS ci ratio: 2.823122e-02	ci left: 4.838484e-01	ci right 4.977543e-01	k: 9816	n:20000
KCNQ3   20000 perm   3 sec   (5971 perm/sec)   p_kst 4.908000e-01   p_cons 5.215000e-02   p_joint 1.838500e-01

Joint ci ratio: 4.710181e-02	ci left: 1.831301e-01	ci right 1.919972e-01	k: 5626	n:30000
Cons ci ratio: 9.324420e-02	ci left: 5.303346e-02	ci right 5.825301e-02	k: 1668	n:30000
KS ci ratio: 2.298069e-02	ci left: 4.866604e-01	ci right 4.980078e-01	k: 14770	n:30000
KCNQ3   30000 perm   5 sec   (5678 perm/sec)   p_kst 4.923333e-01   p_cons 5.560000e-02   p_joint 1.875333e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ3.4_2679_30000_0.49233_0.0556_0.18753.png
                gene_name: KCNQ3
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
KCNQ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
KS ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KCNQ5   10000 perm   2 sec   (6260 perm/sec)   p_kst 6.400000e-03   p_cons 4.094000e-01   p_joint 5.220000e-02

Joint ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
Cons ci ratio: 3.363579e-02	ci left: 3.975876e-01	ci right 4.112402e-01	k: 8088	n:20000
KS ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
KCNQ5   20000 perm   4 sec   (5650 perm/sec)   p_kst 6.300000e-03   p_cons 4.044000e-01   p_joint 2.020000e-02

Joint ci ratio: 2.042102e-01	ci left: 1.089357e-02	ci right 1.340224e-02	k: 363	n:30000
Cons ci ratio: 2.759019e-02	ci left: 3.966444e-01	ci right 4.077746e-01	k: 12066	n:30000
KS ci ratio: 2.819903e-01	ci left: 5.498039e-03	ci right 7.332854e-03	k: 191	n:30000
KCNQ5   30000 perm   6 sec   (5411 perm/sec)   p_kst 6.366667e-03   p_cons 4.022000e-01   p_joint 1.210000e-02

Joint ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
Cons ci ratio: 2.391532e-02	ci left: 3.969653e-01	ci right 4.065989e-01	k: 16071	n:40000
KS ci ratio: 2.409186e-01	ci left: 5.782973e-03	ci right 7.389919e-03	k: 262	n:40000
KCNQ5   40000 perm   8 sec   (5254 perm/sec)   p_kst 6.550000e-03   p_cons 4.017750e-01   p_joint 1.495000e-02

Joint ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
Cons ci ratio: 2.142256e-02	ci left: 3.967599e-01	ci right 4.053716e-01	k: 20053	n:50000
KS ci ratio: 2.191204e-01	ci left: 5.663077e-03	ci right 7.075155e-03	k: 317	n:50000
KCNQ5   50000 perm   10 sec   (5126 perm/sec)   p_kst 6.340000e-03   p_cons 4.010600e-01   p_joint 1.220000e-02

Joint ci ratio: 1.352851e-01	ci left: 1.286567e-02	ci right 1.474845e-02	k: 827	n:60000
Cons ci ratio: 2.001237e-02	ci left: 3.861276e-01	ci right 3.939497e-01	k: 23402	n:60000
KS ci ratio: 2.039939e-01	ci left: 5.492623e-03	ci right 6.755865e-03	k: 366	n:60000
KCNQ5   60000 perm   12 sec   (5007 perm/sec)   p_kst 6.100000e-03   p_cons 3.900333e-01   p_joint 1.378333e-02

Joint ci ratio: 1.322250e-01	ci left: 1.157951e-02	ci right 1.323270e-02	k: 867	n:70000
Cons ci ratio: 1.800486e-02	ci left: 4.001051e-01	ci right 4.073886e-01	k: 28262	n:70000
KS ci ratio: 1.886772e-01	ci left: 5.550207e-03	ci right 6.719871e-03	k: 428	n:70000
KCNQ5   70000 perm   14 sec   (4907 perm/sec)   p_kst 6.114286e-03   p_cons 4.037429e-01   p_joint 1.238571e-02

Joint ci ratio: 1.412343e-01	ci left: 8.863518e-03	ci right 1.022241e-02	k: 762	n:80000
Cons ci ratio: 1.688605e-02	ci left: 3.990866e-01	ci right 4.058955e-01	k: 32199	n:80000
KS ci ratio: 1.760020e-01	ci left: 5.619969e-03	ci right 6.716308e-03	k: 492	n:80000
KCNQ5   80000 perm   17 sec   (4813 perm/sec)   p_kst 6.150000e-03   p_cons 4.024875e-01   p_joint 9.525000e-03

Joint ci ratio: 1.461184e-01	ci left: 7.353378e-03	ci right 8.523116e-03	k: 713	n:90000
Cons ci ratio: 1.592215e-02	ci left: 3.992272e-01	ci right 4.056458e-01	k: 36219	n:90000
KS ci ratio: 1.684964e-01	ci left: 5.473942e-03	ci right 6.491628e-03	k: 537	n:90000
KCNQ5   90000 perm   19 sec   (4727 perm/sec)   p_kst 5.966667e-03   p_cons 4.024333e-01   p_joint 7.922222e-03

Joint ci ratio: 1.385615e-01	ci left: 7.389572e-03	ci right 8.499254e-03	k: 793	n:100000
Cons ci ratio: 1.511873e-02	ci left: 3.989590e-01	ci right 4.050467e-01	k: 40200	n:100000
KS ci ratio: 1.588871e-01	ci left: 5.569140e-03	ci right 6.539845e-03	k: 604	n:100000
KCNQ5   100000 perm   22 sec   (4647 perm/sec)   p_kst 6.040000e-03   p_cons 4.020000e-01   p_joint 7.930000e-03

Joint ci ratio: 1.274451e-01	ci left: 7.983541e-03	ci right 9.078972e-03	k: 937	n:110000
Cons ci ratio: 1.440536e-02	ci left: 3.994275e-01	ci right 4.052322e-01	k: 44256	n:110000
KS ci ratio: 1.529448e-01	ci left: 5.482177e-03	ci right 6.398712e-03	k: 652	n:110000
KCNQ5   110000 perm   24 sec   (4569 perm/sec)   p_kst 5.927273e-03   p_cons 4.023273e-01   p_joint 8.518182e-03

Joint ci ratio: 1.263419e-01	ci left: 7.455285e-03	ci right 8.468710e-03	k: 954	n:120000
Cons ci ratio: 1.380652e-02	ci left: 3.990493e-01	ci right 4.046054e-01	k: 48219	n:120000
KS ci ratio: 1.480481e-01	ci left: 5.378168e-03	ci right 6.245976e-03	k: 696	n:120000
KCNQ5   120000 perm   27 sec   (4490 perm/sec)   p_kst 5.800000e-03   p_cons 4.018250e-01   p_joint 7.950000e-03

Joint ci ratio: 1.230498e-01	ci left: 7.269282e-03	ci right 8.229794e-03	k: 1006	n:130000
Cons ci ratio: 1.325985e-02	ci left: 3.993408e-01	ci right 4.046790e-01	k: 52261	n:130000
KS ci ratio: 1.425331e-01	ci left: 5.372161e-03	ci right 6.203963e-03	k: 751	n:130000
KCNQ5   130000 perm   29 sec   (4415 perm/sec)   p_kst 5.776923e-03   p_cons 4.020077e-01   p_joint 7.738462e-03

Joint ci ratio: 1.208090e-01	ci left: 7.013140e-03	ci right 7.921724e-03	k: 1044	n:140000
Cons ci ratio: 1.275877e-02	ci left: 4.001437e-01	ci right 4.052889e-01	k: 56380	n:140000
KS ci ratio: 1.373353e-01	ci left: 5.388222e-03	ci right 6.189598e-03	k: 809	n:140000
KCNQ5   140000 perm   32 sec   (4345 perm/sec)   p_kst 5.778571e-03   p_cons 4.027143e-01   p_joint 7.457143e-03

Joint ci ratio: 1.164323e-01	ci left: 7.063119e-03	ci right 7.942746e-03	k: 1124	n:150000
Cons ci ratio: 1.233557e-02	ci left: 3.998637e-01	ci right 4.048334e-01	k: 60352	n:150000
KS ci ratio: 1.322848e-01	ci left: 5.434854e-03	ci right 6.211102e-03	k: 872	n:150000
KCNQ5   150000 perm   35 sec   (4275 perm/sec)   p_kst 5.813333e-03   p_cons 4.023467e-01   p_joint 7.493333e-03

Joint ci ratio: 1.142805e-01	ci left: 6.882632e-03	ci right 7.722870e-03	k: 1167	n:160000
Cons ci ratio: 1.193511e-02	ci left: 4.002955e-01	ci right 4.051080e-01	k: 64432	n:160000
KS ci ratio: 1.283062e-01	ci left: 5.427720e-03	ci right 6.177858e-03	k: 927	n:160000
KCNQ5   160000 perm   38 sec   (4209 perm/sec)   p_kst 5.793750e-03   p_cons 4.027000e-01   p_joint 7.293750e-03

Joint ci ratio: 1.077628e-01	ci left: 7.307127e-03	ci right 8.145086e-03	k: 1312	n:170000
Cons ci ratio: 1.157706e-02	ci left: 4.004379e-01	ci right 4.051066e-01	k: 68471	n:170000
KS ci ratio: 1.246662e-01	ci left: 5.421734e-03	ci right 6.148217e-03	k: 982	n:170000
KCNQ5   170000 perm   41 sec   (4148 perm/sec)   p_kst 5.776471e-03   p_cons 4.027706e-01   p_joint 7.717647e-03

Joint ci ratio: 1.051173e-01	ci left: 7.263480e-03	ci right 8.074719e-03	k: 1379	n:180000
Cons ci ratio: 1.125228e-02	ci left: 4.004442e-01	ci right 4.049811e-01	k: 72488	n:180000
KS ci ratio: 1.216736e-01	ci left: 5.384355e-03	ci right 6.087263e-03	k: 1031	n:180000
KCNQ5   180000 perm   44 sec   (4088 perm/sec)   p_kst 5.727778e-03   p_cons 4.027111e-01   p_joint 7.661111e-03

Joint ci ratio: 9.916088e-02	ci left: 7.753182e-03	ci right 8.567195e-03	k: 1549	n:190000
Cons ci ratio: 1.094608e-02	ci left: 4.007723e-01	ci right 4.051885e-01	k: 76566	n:190000
KS ci ratio: 1.189974e-01	ci left: 5.340884e-03	ci right 6.021700e-03	k: 1078	n:190000
KCNQ5   190000 perm   47 sec   (4030 perm/sec)   p_kst 5.673684e-03   p_cons 4.029789e-01   p_joint 8.152632e-03

Joint ci ratio: 9.642922e-02	ci left: 7.799648e-03	ci right 8.594705e-03	k: 1638	n:200000
Cons ci ratio: 1.066868e-02	ci left: 4.008393e-01	ci right 4.051436e-01	k: 80598	n:200000
KS ci ratio: 1.155142e-01	ci left: 5.394170e-03	ci right 6.060279e-03	k: 1144	n:200000
KCNQ5   200000 perm   50 sec   (3973 perm/sec)   p_kst 5.720000e-03   p_cons 4.029900e-01   p_joint 8.190000e-03

Joint ci ratio: 9.454806e-02	ci left: 7.735004e-03	ci right 8.507237e-03	k: 1704	n:210000
Cons ci ratio: 1.041352e-02	ci left: 4.008012e-01	ci right 4.050015e-01	k: 84609	n:210000
KS ci ratio: 1.123200e-01	ci left: 5.442643e-03	ci right 6.094922e-03	k: 1210	n:210000
KCNQ5   210000 perm   54 sec   (3919 perm/sec)   p_kst 5.761905e-03   p_cons 4.029000e-01   p_joint 8.114286e-03

Joint ci ratio: 9.352100e-02	ci left: 7.552045e-03	ci right 8.297372e-03	k: 1742	n:220000
Cons ci ratio: 1.017862e-02	ci left: 4.006360e-01	ci right 4.047393e-01	k: 88591	n:220000
KS ci ratio: 1.100726e-01	ci left: 5.416198e-03	ci right 6.051477e-03	k: 1260	n:220000
KCNQ5   220000 perm   57 sec   (3865 perm/sec)   p_kst 5.727273e-03   p_cons 4.026864e-01   p_joint 7.918182e-03

Joint ci ratio: 9.152175e-02	ci left: 7.550731e-03	ci right 8.279144e-03	k: 1819	n:230000
Cons ci ratio: 9.948040e-03	ci left: 4.010119e-01	ci right 4.050254e-01	k: 92694	n:230000
KS ci ratio: 1.076252e-01	ci left: 5.426021e-03	ci right 6.047404e-03	k: 1318	n:230000
KCNQ5   230000 perm   60 sec   (3815 perm/sec)   p_kst 5.730435e-03   p_cons 4.030174e-01   p_joint 7.908696e-03

Joint ci ratio: 8.155998e-02	ci left: 9.144337e-03	ci right 9.925910e-03	k: 2287	n:240000
Cons ci ratio: 9.733038e-03	ci left: 4.013282e-01	ci right 4.052575e-01	k: 96790	n:240000
KS ci ratio: 1.052956e-01	ci left: 5.439226e-03	ci right 6.047804e-03	k: 1377	n:240000
KCNQ5   240000 perm   64 sec   (3765 perm/sec)   p_kst 5.737500e-03   p_cons 4.032917e-01   p_joint 9.529167e-03

Joint ci ratio: 7.991778e-02	ci left: 9.150892e-03	ci right 9.916544e-03	k: 2382	n:250000
Cons ci ratio: 9.537101e-03	ci left: 4.013322e-01	ci right 4.051820e-01	k: 100814	n:250000
KS ci ratio: 1.031471e-01	ci left: 5.447611e-03	ci right 6.043936e-03	k: 1435	n:250000
KCNQ5   250000 perm   67 sec   (3716 perm/sec)   p_kst 5.740000e-03   p_cons 4.032560e-01   p_joint 9.528000e-03

Joint ci ratio: 7.976384e-02	ci left: 8.836571e-03	ci right 9.574432e-03	k: 2392	n:260000
Cons ci ratio: 9.355829e-03	ci left: 4.011676e-01	ci right 4.049423e-01	k: 104794	n:260000
KS ci ratio: 1.013299e-01	ci left: 5.432971e-03	ci right 6.016592e-03	k: 1487	n:260000
KCNQ5   260000 perm   71 sec   (3668 perm/sec)   p_kst 5.719231e-03   p_cons 4.030538e-01   p_joint 9.200000e-03

Joint ci ratio: 8.122848e-02	ci left: 8.204333e-03	ci right 8.902574e-03	k: 2308	n:270000
Cons ci ratio: 9.181332e-03	ci left: 4.011824e-01	ci right 4.048864e-01	k: 108819	n:270000
KS ci ratio: 9.880201e-02	ci left: 5.509809e-03	ci right 6.086063e-03	k: 1564	n:270000
KCNQ5   270000 perm   75 sec   (3621 perm/sec)   p_kst 5.792593e-03   p_cons 4.030333e-01   p_joint 8.548148e-03

Outputting figure to mutsig2_images.part000000000089/KCNQ5.4_2916_270000_0.0057926_0.40303_0.0085481.png
                gene_name: KCNQ5
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0089 

Current progress: 61 percent done.
KCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
KS ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
KCNT1   10000 perm   2 sec   (5571 perm/sec)   p_kst 2.027000e-01   p_cons 3.060000e-02   p_joint 7.860000e-02

Joint ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
Cons ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
KS ci ratio: 5.491358e-02	ci left: 1.974439e-01	ci right 2.086425e-01	k: 4060	n:20000
KCNT1   20000 perm   4 sec   (5035 perm/sec)   p_kst 2.030000e-01   p_cons 3.115000e-02   p_joint 5.690000e-02

Joint ci ratio: 7.007008e-02	ci left: 9.114695e-02	ci right 9.779849e-02	k: 2833	n:30000
Cons ci ratio: 1.210642e-01	ci left: 3.171894e-02	ci right 3.583866e-02	k: 1012	n:30000
KS ci ratio: 4.389610e-02	ci left: 2.053695e-01	ci right 2.146201e-01	k: 6299	n:30000
KCNT1   30000 perm   6 sec   (4816 perm/sec)   p_kst 2.099667e-01   p_cons 3.373333e-02   p_joint 9.443333e-02

Joint ci ratio: 6.715284e-02	ci left: 7.585782e-02	ci right 8.115356e-02	k: 3139	n:40000
Cons ci ratio: 1.039980e-01	ci left: 3.251345e-02	ci right 3.610457e-02	k: 1371	n:40000
KS ci ratio: 3.825166e-02	ci left: 2.039568e-01	ci right 2.119356e-01	k: 8317	n:40000
KCNT1   40000 perm   9 sec   (4676 perm/sec)   p_kst 2.079250e-01   p_cons 3.427500e-02   p_joint 7.847500e-02

Joint ci ratio: 5.659093e-02	ci left: 8.507673e-02	ci right 9.005128e-02	k: 4377	n:50000
Cons ci ratio: 9.196895e-02	ci left: 3.344528e-02	ci right 3.668899e-02	k: 1752	n:50000
KS ci ratio: 3.433117e-02	ci left: 2.032571e-01	ci right 2.103770e-01	k: 10340	n:50000
KCNT1   50000 perm   11 sec   (4575 perm/sec)   p_kst 2.068000e-01   p_cons 3.504000e-02   p_joint 8.754000e-02

Outputting figure to mutsig2_images.part000000000089/KCNT1.4_3832_50000_0.2068_0.03504_0.08754.png
                gene_name: KCNT1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 62 percent done.
KCTD16
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 4.125455e-02	ci left: 4.645717e-01	ci right 4.842432e-01	k: 4744	n:10000
KCTD16   10000 perm   1 sec   (7177 perm/sec)   p_kst 4.744000e-01   p_cons 3.400000e-01   p_joint 5.610000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD16.3_1295_10000_0.4744_0.34_0.561.png
                gene_name: KCTD16
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 64 percent done.
KCTD19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
Cons ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KCTD19   10000 perm   2 sec   (6472 perm/sec)   p_kst 3.399000e-01   p_cons 1.253000e-01   p_joint 2.675000e-01

Joint ci ratio: 4.983754e-02	ci left: 2.303271e-01	ci right 2.421497e-01	k: 4724	n:20000
Cons ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
KS ci ratio: 3.897908e-02	ci left: 3.292541e-01	ci right 3.423937e-01	k: 6716	n:20000
KCTD19   20000 perm   3 sec   (5753 perm/sec)   p_kst 3.358000e-01   p_cons 1.224500e-01   p_joint 2.362000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD19.4_2845_20000_0.3358_0.12245_0.2362.png
                gene_name: KCTD19
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 66 percent done.
KDM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
KS ci ratio: 5.711794e-03	ci left: 9.763158e-01	ci right 9.820003e-01	k: 9793	n:10000
KDM2A   10000 perm   2 sec   (5716 perm/sec)   p_kst 9.793000e-01   p_cons 8.880000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDM2A.4_3569_10000_0.9793_0.888_1.png
                gene_name: KDM2A
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
KDM4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
KS ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
KDM4A   10000 perm   2 sec   (5902 perm/sec)   p_kst 1.721000e-01   p_cons 9.537000e-01   p_joint 3.614000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4A.4_3279_10000_0.1721_0.9537_0.3614.png
                gene_name: KDM4A
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
KDM4DL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
KS ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
KDM4DL   10000 perm   1 sec   (6683 perm/sec)   p_kst 3.600000e-03   p_cons 2.663000e-01   p_joint 1.090000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 4.607964e-02	ci left: 2.595382e-01	ci right 2.718300e-01	k: 5313	n:20000
KS ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
KDM4DL   20000 perm   3 sec   (5948 perm/sec)   p_kst 3.900000e-03   p_cons 2.656500e-01   p_joint 6.750000e-03

Joint ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
Cons ci ratio: 3.893331e-02	ci left: 2.476245e-01	ci right 2.574902e-01	k: 7576	n:30000
KS ci ratio: 3.571231e-01	ci left: 3.287119e-03	ci right 4.744855e-03	k: 119	n:30000
KDM4DL   30000 perm   5 sec   (5661 perm/sec)   p_kst 3.966667e-03   p_cons 2.525333e-01   p_joint 1.293333e-02

Joint ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
Cons ci ratio: 3.197853e-02	ci left: 2.686880e-01	ci right 2.774449e-01	k: 10922	n:40000
KS ci ratio: 2.793097e-01	ci left: 4.216083e-03	ci right 5.607289e-03	k: 195	n:40000
KDM4DL   40000 perm   7 sec   (5476 perm/sec)   p_kst 4.875000e-03   p_cons 2.730500e-01   p_joint 1.130000e-02

Joint ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
Cons ci ratio: 2.858629e-02	ci left: 2.693771e-01	ci right 2.772093e-01	k: 13664	n:50000
KS ci ratio: 2.551084e-01	ci left: 4.100679e-03	ci right 5.317924e-03	k: 234	n:50000
KDM4DL   50000 perm   9 sec   (5327 perm/sec)   p_kst 4.680000e-03   p_cons 2.732800e-01   p_joint 8.460000e-03

Joint ci ratio: 2.039939e-01	ci left: 5.492623e-03	ci right 6.755865e-03	k: 366	n:60000
Cons ci ratio: 2.605187e-02	ci left: 2.703841e-01	ci right 2.775378e-01	k: 16437	n:60000
KS ci ratio: 2.304313e-01	ci left: 4.246993e-03	ci right 5.368398e-03	k: 287	n:60000
KDM4DL   60000 perm   12 sec   (5205 perm/sec)   p_kst 4.783333e-03   p_cons 2.739500e-01   p_joint 6.100000e-03

Joint ci ratio: 1.365090e-01	ci left: 1.084754e-02	ci right 1.245047e-02	k: 814	n:70000
Cons ci ratio: 2.403791e-02	ci left: 2.719933e-01	ci right 2.786253e-01	k: 19271	n:70000
KS ci ratio: 2.120734e-01	ci left: 4.342053e-03	ci right 5.385356e-03	k: 339	n:70000
KDM4DL   70000 perm   14 sec   (5096 perm/sec)   p_kst 4.842857e-03   p_cons 2.753000e-01   p_joint 1.162857e-02

Joint ci ratio: 1.412343e-01	ci left: 8.863518e-03	ci right 1.022241e-02	k: 762	n:80000
Cons ci ratio: 2.253422e-02	ci left: 2.713473e-01	ci right 2.775441e-01	k: 21955	n:80000
KS ci ratio: 1.985234e-01	ci left: 4.368484e-03	ci right 5.342958e-03	k: 387	n:80000
KDM4DL   80000 perm   16 sec   (4995 perm/sec)   p_kst 4.837500e-03   p_cons 2.744375e-01   p_joint 9.525000e-03

Joint ci ratio: 1.400201e-01	ci left: 8.028519e-03	ci right 9.247913e-03	k: 776	n:90000
Cons ci ratio: 2.125525e-02	ci left: 2.713426e-01	ci right 2.771831e-01	k: 24683	n:90000
KS ci ratio: 1.859959e-01	ci left: 4.454259e-03	ci right 5.378095e-03	k: 441	n:90000
KDM4DL   90000 perm   18 sec   (4901 perm/sec)   p_kst 4.900000e-03   p_cons 2.742556e-01   p_joint 8.622222e-03

Joint ci ratio: 1.193637e-01	ci left: 1.003272e-02	ci right 1.131590e-02	k: 1066	n:100000
Cons ci ratio: 2.013803e-02	ci left: 2.720148e-01	ci right 2.775583e-01	k: 27478	n:100000
KS ci ratio: 1.766523e-01	ci left: 4.467060e-03	ci right 5.342037e-03	k: 489	n:100000
KDM4DL   100000 perm   21 sec   (4814 perm/sec)   p_kst 4.890000e-03   p_cons 2.747800e-01   p_joint 1.066000e-02

Joint ci ratio: 1.181979e-01	ci left: 9.314508e-03	ci right 1.049337e-02	k: 1088	n:110000
Cons ci ratio: 1.919906e-02	ci left: 2.721815e-01	ci right 2.774668e-01	k: 30230	n:110000
KS ci ratio: 1.693814e-01	ci left: 4.434943e-03	ci right 5.264223e-03	k: 532	n:110000
KDM4DL   110000 perm   23 sec   (4735 perm/sec)   p_kst 4.836364e-03   p_cons 2.748182e-01   p_joint 9.890909e-03

Joint ci ratio: 1.151399e-01	ci left: 9.015537e-03	ci right 1.012502e-02	k: 1147	n:120000
Cons ci ratio: 1.834958e-02	ci left: 2.729901e-01	ci right 2.780541e-01	k: 33062	n:120000
KS ci ratio: 1.604403e-01	ci left: 4.552751e-03	ci right 5.354793e-03	k: 593	n:120000
KDM4DL   120000 perm   26 sec   (4652 perm/sec)   p_kst 4.941667e-03   p_cons 2.755167e-01   p_joint 9.558333e-03

Joint ci ratio: 1.145801e-01	ci left: 8.411538e-03	ci right 9.441315e-03	k: 1159	n:130000
Cons ci ratio: 1.765156e-02	ci left: 2.725970e-01	ci right 2.774592e-01	k: 35753	n:130000
KS ci ratio: 1.545691e-01	ci left: 4.542440e-03	ci right 5.310668e-03	k: 639	n:130000
KDM4DL   130000 perm   28 sec   (4576 perm/sec)   p_kst 4.915385e-03   p_cons 2.750231e-01   p_joint 8.915385e-03

Joint ci ratio: 9.700963e-02	ci left: 1.096898e-02	ci right 1.209424e-02	k: 1613	n:140000
Cons ci ratio: 1.701322e-02	ci left: 2.725981e-01	ci right 2.772827e-01	k: 38491	n:140000
KS ci ratio: 1.574646e-01	ci left: 4.060027e-03	ci right 4.760743e-03	k: 616	n:140000
KDM4DL   140000 perm   31 sec   (4506 perm/sec)   p_kst 4.400000e-03   p_cons 2.749357e-01   p_joint 1.152143e-02

Joint ci ratio: 1.036427e-01	ci left: 8.956806e-03	ci right 9.942295e-03	k: 1416	n:150000
Cons ci ratio: 1.643343e-02	ci left: 2.727480e-01	ci right 2.772740e-01	k: 41251	n:150000
KS ci ratio: 1.509906e-01	ci left: 4.135482e-03	ci right 4.817224e-03	k: 670	n:150000
KDM4DL   150000 perm   34 sec   (4437 perm/sec)   p_kst 4.466667e-03   p_cons 2.750067e-01   p_joint 9.440000e-03

Joint ci ratio: 1.066365e-01	ci left: 7.928183e-03	ci right 8.827268e-03	k: 1339	n:160000
Cons ci ratio: 1.589893e-02	ci left: 2.731373e-01	ci right 2.775209e-01	k: 44052	n:160000
KS ci ratio: 1.463742e-01	ci left: 4.135767e-03	ci right 4.794888e-03	k: 713	n:160000
KDM4DL   160000 perm   37 sec   (4367 perm/sec)   p_kst 4.456250e-03   p_cons 2.753250e-01   p_joint 8.368750e-03

Joint ci ratio: 1.094991e-01	ci left: 7.072457e-03	ci right 7.897414e-03	k: 1271	n:170000
Cons ci ratio: 1.579909e-02	ci left: 2.637481e-01	ci right 2.679540e-01	k: 45194	n:170000
KS ci ratio: 1.393198e-01	ci left: 4.312257e-03	ci right 4.963637e-03	k: 787	n:170000
KDM4DL   170000 perm   40 sec   (4301 perm/sec)   p_kst 4.629412e-03   p_cons 2.658471e-01   p_joint 7.476471e-03

Joint ci ratio: 1.101782e-01	ci left: 6.598410e-03	ci right 7.373152e-03	k: 1256	n:180000
Cons ci ratio: 1.536500e-02	ci left: 2.635275e-01	ci right 2.676134e-01	k: 47802	n:180000
KS ci ratio: 1.348559e-01	ci left: 4.357042e-03	ci right 4.992407e-03	k: 840	n:180000
KDM4DL   180000 perm   42 sec   (4238 perm/sec)   p_kst 4.666667e-03   p_cons 2.655667e-01   p_joint 6.977778e-03

Joint ci ratio: 1.117299e-01	ci left: 6.077052e-03	ci right 6.801288e-03	k: 1222	n:190000
Cons ci ratio: 1.494546e-02	ci left: 2.638356e-01	ci right 2.678136e-01	k: 50506	n:190000
KS ci ratio: 1.316113e-01	ci left: 4.341406e-03	ci right 4.958068e-03	k: 882	n:190000
KDM4DL   190000 perm   45 sec   (4178 perm/sec)   p_kst 4.642105e-03   p_cons 2.658211e-01   p_joint 6.431579e-03

Joint ci ratio: 1.092159e-01	ci left: 6.050320e-03	ci right 6.754102e-03	k: 1279	n:200000
Cons ci ratio: 1.456112e-02	ci left: 2.640444e-01	ci right 2.679224e-01	k: 53196	n:200000
KS ci ratio: 1.284507e-01	ci left: 4.337179e-03	ci right 4.937318e-03	k: 926	n:200000
KDM4DL   200000 perm   49 sec   (4120 perm/sec)   p_kst 4.630000e-03   p_cons 2.659800e-01   p_joint 6.395000e-03

Joint ci ratio: 8.602745e-02	ci left: 9.369094e-03	ci right 1.021595e-02	k: 2055	n:210000
Cons ci ratio: 1.420913e-02	ci left: 2.641205e-01	ci right 2.679050e-01	k: 55862	n:210000
KS ci ratio: 1.257678e-01	ci left: 4.315063e-03	ci right 4.898741e-03	k: 966	n:210000
KDM4DL   210000 perm   52 sec   (4062 perm/sec)   p_kst 4.600000e-03   p_cons 2.660095e-01   p_joint 9.785714e-03

Joint ci ratio: 8.490774e-02	ci left: 9.187846e-03	ci right 1.000697e-02	k: 2110	n:220000
Cons ci ratio: 1.386809e-02	ci left: 2.645671e-01	ci right 2.682663e-01	k: 58611	n:220000
KS ci ratio: 1.239282e-01	ci left: 4.246616e-03	ci right 4.812015e-03	k: 995	n:220000
KDM4DL   220000 perm   55 sec   (4006 perm/sec)   p_kst 4.522727e-03   p_cons 2.664136e-01   p_joint 9.590909e-03

Joint ci ratio: 8.302157e-02	ci left: 9.201260e-03	ci right 1.000248e-02	k: 2207	n:230000
Cons ci ratio: 1.355349e-02	ci left: 2.648891e-01	ci right 2.685081e-01	k: 61340	n:230000
KS ci ratio: 1.209868e-01	ci left: 4.268501e-03	ci right 4.822360e-03	k: 1044	n:230000
KDM4DL   230000 perm   58 sec   (3951 perm/sec)   p_kst 4.539130e-03   p_cons 2.666957e-01   p_joint 9.595652e-03

Joint ci ratio: 8.177677e-02	ci left: 9.095349e-03	ci right 9.874900e-03	k: 2275	n:240000
Cons ci ratio: 1.326756e-02	ci left: 2.649439e-01	ci right 2.684867e-01	k: 64011	n:240000
KS ci ratio: 1.177062e-01	ci left: 4.329149e-03	ci right 4.874588e-03	k: 1103	n:240000
KDM4DL   240000 perm   62 sec   (3898 perm/sec)   p_kst 4.595833e-03   p_cons 2.667125e-01   p_joint 9.479167e-03

Joint ci ratio: 8.076031e-02	ci left: 8.958794e-03	ci right 9.716647e-03	k: 2333	n:250000
Cons ci ratio: 1.300551e-02	ci left: 2.647995e-01	ci right 2.682699e-01	k: 66633	n:250000
KS ci ratio: 1.156315e-01	ci left: 4.311312e-03	ci right 4.844274e-03	k: 1143	n:250000
KDM4DL   250000 perm   65 sec   (3847 perm/sec)   p_kst 4.572000e-03   p_cons 2.665320e-01   p_joint 9.332000e-03

Joint ci ratio: 8.368176e-02	ci left: 8.018860e-03	ci right 8.722935e-03	k: 2175	n:260000
Cons ci ratio: 1.275074e-02	ci left: 2.649010e-01	ci right 2.683042e-01	k: 69316	n:260000
KS ci ratio: 1.135665e-01	ci left: 4.302399e-03	ci right 4.824124e-03	k: 1185	n:260000
KDM4DL   260000 perm   69 sec   (3795 perm/sec)   p_kst 4.557692e-03   p_cons 2.666000e-01   p_joint 8.365385e-03

Joint ci ratio: 8.240652e-02	ci left: 7.968478e-03	ci right 8.656954e-03	k: 2243	n:270000
Cons ci ratio: 1.252223e-02	ci left: 2.646260e-01	ci right 2.679642e-01	k: 71899	n:270000
KS ci ratio: 1.110644e-01	ci left: 4.337437e-03	ci right 4.851064e-03	k: 1239	n:270000
KDM4DL   270000 perm   72 sec   (3746 perm/sec)   p_kst 4.588889e-03   p_cons 2.662926e-01   p_joint 8.307407e-03

Joint ci ratio: 8.583983e-02	ci left: 7.075388e-03	ci right 7.713444e-03	k: 2069	n:280000
Cons ci ratio: 1.229434e-02	ci left: 2.647276e-01	ci right 2.680059e-01	k: 74582	n:280000
KS ci ratio: 1.087629e-01	ci left: 4.366614e-03	ci right 4.872295e-03	k: 1292	n:280000
KDM4DL   280000 perm   76 sec   (3697 perm/sec)   p_kst 4.614286e-03   p_cons 2.663643e-01   p_joint 7.389286e-03

Joint ci ratio: 8.750527e-02	ci left: 6.571571e-03	ci right 7.176278e-03	k: 1992	n:290000
Cons ci ratio: 1.208420e-02	ci left: 2.646368e-01	ci right 2.678575e-01	k: 77211	n:290000
KS ci ratio: 1.064797e-01	ci left: 4.403951e-03	ci right 4.902579e-03	k: 1348	n:290000
KDM4DL   290000 perm   79 sec   (3652 perm/sec)   p_kst 4.648276e-03   p_cons 2.662448e-01   p_joint 6.868966e-03

Joint ci ratio: 8.660145e-02	ci left: 6.489459e-03	ci right 7.080129e-03	k: 2034	n:300000
Cons ci ratio: 1.188236e-02	ci left: 2.646224e-01	ci right 2.677888e-01	k: 79861	n:300000
KS ci ratio: 1.048986e-01	ci left: 4.390205e-03	ci right 4.879440e-03	k: 1389	n:300000
KDM4DL   300000 perm   83 sec   (3605 perm/sec)   p_kst 4.630000e-03   p_cons 2.662033e-01   p_joint 6.780000e-03

Joint ci ratio: 8.549734e-02	ci left: 6.447404e-03	ci right 7.026391e-03	k: 2087	n:310000
Cons ci ratio: 1.169088e-02	ci left: 2.645900e-01	ci right 2.677047e-01	k: 82505	n:310000
KS ci ratio: 1.031687e-01	ci left: 4.396254e-03	ci right 4.877595e-03	k: 1436	n:310000
KDM4DL   310000 perm   87 sec   (3559 perm/sec)   p_kst 4.632258e-03   p_cons 2.661452e-01   p_joint 6.732258e-03

Joint ci ratio: 8.632161e-02	ci left: 6.126623e-03	ci right 6.682373e-03	k: 2048	n:320000
Cons ci ratio: 1.151206e-02	ci left: 2.644353e-01	ci right 2.675002e-01	k: 85109	n:320000
KS ci ratio: 1.013846e-01	ci left: 4.414171e-03	ci right 4.888618e-03	k: 1487	n:320000
KDM4DL   320000 perm   91 sec   (3516 perm/sec)   p_kst 4.646875e-03   p_cons 2.659656e-01   p_joint 6.400000e-03

Joint ci ratio: 8.641496e-02	ci left: 5.929082e-03	ci right 6.467524e-03	k: 2044	n:330000
Cons ci ratio: 1.133274e-02	ci left: 2.645807e-01	ci right 2.675992e-01	k: 87809	n:330000
KS ci ratio: 9.978763e-02	ci left: 4.422205e-03	ci right 4.889589e-03	k: 1535	n:330000
KDM4DL   330000 perm   95 sec   (3473 perm/sec)   p_kst 4.651515e-03   p_cons 2.660879e-01   p_joint 6.193939e-03

Outputting figure to mutsig2_images.part000000000089/KDM4DL.4_1525_330000_0.0046515_0.26609_0.0061939.png
                gene_name: KDM4DL
               theta_stop: 0.100 
                    nperm: 330000 
                     p_ks: 0.0047 
        ci_ks_bounds_left: 0.0044 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.0062 
     ci_joint_bounds_left: 0.0059 
    ci_joint_bounds_right: 0.0065 

Current progress: 70 percent done.
KCNMB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
KS ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
KCNMB2   10000 perm   1 sec   (7345 perm/sec)   p_kst 9.269000e-01   p_cons 3.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNMB2.3_724_10000_0.9269_0.3813_1.png
                gene_name: KCNMB2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
KCNQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
KCNQ4   10000 perm   1 sec   (6873 perm/sec)   p_kst 9.394000e-01   p_cons 8.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNQ4.3_2144_10000_0.9394_0.8809_1.png
                gene_name: KCNQ4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
KCTD20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
Cons ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
KS ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
KCTD20   10000 perm   1 sec   (7017 perm/sec)   p_kst 9.440000e-01   p_cons 2.080000e-01   p_joint 7.611000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD20.3_1288_10000_0.944_0.208_0.7611.png
                gene_name: KCTD20
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 75 percent done.
KDM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
KDM1A   10000 perm   2 sec   (6367 perm/sec)   p_kst 6.474000e-01   p_cons 2.188000e-01   p_joint 4.621000e-01

Outputting figure to mutsig2_images.part000000000089/KDM1A.3_2715_10000_0.6474_0.2188_0.4621.png
                gene_name: KDM1A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 77 percent done.
KERA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
Cons ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
KERA   10000 perm   1 sec   (7172 perm/sec)   p_kst 4.200000e-02   p_cons 1.299000e-01   p_joint 5.680000e-02

Joint ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
Cons ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
KS ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
KERA   20000 perm   3 sec   (6364 perm/sec)   p_kst 4.250000e-02   p_cons 1.299500e-01   p_joint 4.375000e-02

Joint ci ratio: 1.144993e-01	ci left: 3.544322e-02	ci right 3.978025e-02	k: 1127	n:30000
Cons ci ratio: 5.876418e-02	ci left: 1.253580e-01	ci right 1.329807e-01	k: 3874	n:30000
KS ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
KERA   30000 perm   5 sec   (6048 perm/sec)   p_kst 4.230000e-02   p_cons 1.291333e-01   p_joint 3.756667e-02

Joint ci ratio: 7.801135e-02	ci left: 5.705406e-02	ci right 6.171016e-02	k: 2374	n:40000
Cons ci ratio: 5.082742e-02	ci left: 1.261500e-01	ci right 1.327539e-01	k: 5177	n:40000
KS ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
KERA   40000 perm   7 sec   (5794 perm/sec)   p_kst 4.225000e-02   p_cons 1.294250e-01   p_joint 5.935000e-02

Outputting figure to mutsig2_images.part000000000089/KERA.3_1067_40000_0.04225_0.12943_0.05935.png
                gene_name: KERA
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 79 percent done.
KCNK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 4.659998e-02	ci left: 4.046213e-01	ci right 4.240286e-01	k: 4143	n:10000
KCNK15   10000 perm   1 sec   (7541 perm/sec)   p_kst 4.143000e-01   p_cons 1.402000e-01   p_joint 4.399000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK15.2_1001_10000_0.4143_0.1402_0.4399.png
                gene_name: KCNK15
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 80 percent done.
KCNK16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
Cons ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
KS ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
KCNK16   10000 perm   1 sec   (7377 perm/sec)   p_kst 4.838000e-01   p_cons 9.510000e-02   p_joint 2.787000e-01

Joint ci ratio: 5.392387e-02	ci left: 2.033331e-01	ci right 2.146516e-01	k: 4179	n:20000
Cons ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
KS ci ratio: 2.811569e-02	ci left: 4.858977e-01	ci right 4.998044e-01	k: 9857	n:20000
KCNK16   20000 perm   3 sec   (6508 perm/sec)   p_kst 4.928500e-01   p_cons 9.790000e-02   p_joint 2.089500e-01

Outputting figure to mutsig2_images.part000000000089/KCNK16.2_1339_20000_0.49285_0.0979_0.20895.png
                gene_name: KCNK16
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 82 percent done.
KCNK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.754394e-03	ci left: 9.970345e-01	ci right 9.988557e-01	k: 9981	n:10000
KS ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KCNK5   10000 perm   1 sec   (7257 perm/sec)   p_kst 2.946000e-01   p_cons 9.981000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNK5.2_1520_10000_0.2946_0.9981_1.png
                gene_name: KCNK5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
KCNN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
Cons ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KCNN4   10000 perm   1 sec   (7327 perm/sec)   p_kst 8.400000e-03   p_cons 1.007000e-01   p_joint 1.870000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
KCNN4   20000 perm   3 sec   (6480 perm/sec)   p_kst 8.900000e-03   p_cons 1.088000e-01   p_joint 2.260000e-02

Joint ci ratio: 1.705713e-01	ci left: 1.582285e-02	ci right 1.880502e-02	k: 518	n:30000
Cons ci ratio: 6.475061e-02	ci left: 1.053306e-01	ci right 1.124120e-01	k: 3265	n:30000
KS ci ratio: 2.290713e-01	ci left: 8.559072e-03	ci right 1.080409e-02	k: 289	n:30000
KCNN4   30000 perm   5 sec   (6165 perm/sec)   p_kst 9.633333e-03   p_cons 1.088333e-01   p_joint 1.726667e-02

Joint ci ratio: 1.935541e-01	ci left: 9.167106e-03	ci right 1.115497e-02	k: 405	n:40000
Cons ci ratio: 5.581490e-02	ci left: 1.067027e-01	ci right 1.128541e-01	k: 4390	n:40000
KS ci ratio: 1.975245e-01	ci left: 8.786519e-03	ci right 1.073564e-02	k: 389	n:40000
KCNN4   40000 perm   7 sec   (5969 perm/sec)   p_kst 9.725000e-03   p_cons 1.097500e-01   p_joint 1.012500e-02

Joint ci ratio: 1.468011e-01	ci left: 1.302701e-02	ci right 1.510997e-02	k: 702	n:50000
Cons ci ratio: 4.965232e-02	ci left: 1.080812e-01	ci right 1.136041e-01	k: 5541	n:50000
KS ci ratio: 1.773156e-01	ci left: 8.821240e-03	ci right 1.055640e-02	k: 483	n:50000
KCNN4   50000 perm   9 sec   (5797 perm/sec)   p_kst 9.660000e-03   p_cons 1.108200e-01   p_joint 1.404000e-02

Joint ci ratio: 8.130143e-02	ci left: 3.578149e-02	ci right 3.883015e-02	k: 2237	n:60000
Cons ci ratio: 4.533158e-02	ci left: 1.082990e-01	ci right 1.133387e-01	k: 6648	n:60000
KS ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
KCNN4   60000 perm   11 sec   (5650 perm/sec)   p_kst 9.466667e-03   p_cons 1.108000e-01   p_joint 3.728333e-02

Joint ci ratio: 7.549613e-02	ci left: 3.568386e-02	ci right 3.849753e-02	k: 2595	n:70000
Cons ci ratio: 4.206708e-02	ci left: 1.080309e-01	ci right 1.126872e-01	k: 7724	n:70000
KS ci ratio: 1.490398e-01	ci left: 9.055967e-03	ci right 1.052795e-02	k: 684	n:70000
KCNN4   70000 perm   13 sec   (5516 perm/sec)   p_kst 9.771429e-03   p_cons 1.103429e-01   p_joint 3.707143e-02

Joint ci ratio: 5.970717e-02	ci left: 4.959648e-02	ci right 5.266117e-02	k: 4089	n:80000
Cons ci ratio: 3.938923e-02	ci left: 1.079884e-01	ci right 1.123399e-01	k: 8812	n:80000
KS ci ratio: 1.385108e-01	ci left: 9.225511e-03	ci right 1.061038e-02	k: 792	n:80000
KCNN4   80000 perm   15 sec   (5404 perm/sec)   p_kst 9.900000e-03   p_cons 1.101500e-01   p_joint 5.111250e-02

Joint ci ratio: 6.093087e-02	ci left: 4.262543e-02	ci right 4.531517e-02	k: 3956	n:90000
Cons ci ratio: 3.712523e-02	ci left: 1.081722e-01	ci right 1.122751e-01	k: 9919	n:90000
KS ci ratio: 1.319499e-01	ci left: 9.069967e-03	ci right 1.036193e-02	k: 873	n:90000
KCNN4   90000 perm   17 sec   (5297 perm/sec)   p_kst 9.700000e-03   p_cons 1.102111e-01   p_joint 4.395556e-02

Joint ci ratio: 5.381268e-02	ci left: 4.903239e-02	ci right 5.175376e-02	k: 5038	n:100000
Cons ci ratio: 3.524566e-02	ci left: 1.081365e-01	ci right 1.120261e-01	k: 11007	n:100000
KS ci ratio: 1.251859e-01	ci left: 9.101794e-03	ci right 1.032690e-02	k: 970	n:100000
KCNN4   100000 perm   19 sec   (5195 perm/sec)   p_kst 9.700000e-03   p_cons 1.100700e-01   p_joint 5.038000e-02

Joint ci ratio: 5.019255e-02	ci left: 5.121620e-02	ci right 5.386200e-02	k: 5778	n:110000
Cons ci ratio: 3.354135e-02	ci left: 1.085989e-01	ci right 1.123126e-01	k: 12149	n:110000
KS ci ratio: 1.186388e-01	ci left: 9.243916e-03	ci right 1.041851e-02	k: 1080	n:110000
KCNN4   110000 perm   22 sec   (5099 perm/sec)   p_kst 9.818182e-03   p_cons 1.104455e-01   p_joint 5.252727e-02

Joint ci ratio: 4.898262e-02	ci left: 4.942426e-02	ci right 5.191418e-02	k: 6079	n:120000
Cons ci ratio: 3.208694e-02	ci left: 1.088390e-01	ci right 1.123965e-01	k: 13273	n:120000
KS ci ratio: 1.127354e-01	ci left: 9.412339e-03	ci right 1.054486e-02	k: 1196	n:120000
KCNN4   120000 perm   24 sec   (5006 perm/sec)   p_kst 9.966667e-03   p_cons 1.106083e-01   p_joint 5.065833e-02

Joint ci ratio: 3.678837e-02	ci left: 7.884352e-02	ci right 8.180600e-02	k: 10441	n:130000
Cons ci ratio: 3.083196e-02	ci left: 1.088847e-01	ci right 1.123020e-01	k: 14376	n:130000
KS ci ratio: 1.073038e-01	ci left: 9.615974e-03	ci right 1.071373e-02	k: 1320	n:130000
KCNN4   130000 perm   26 sec   (4916 perm/sec)   p_kst 1.015385e-02   p_cons 1.105846e-01   p_joint 8.031538e-02

Joint ci ratio: 3.478549e-02	ci left: 8.171584e-02	ci right 8.461574e-02	k: 11642	n:140000
Cons ci ratio: 2.974924e-02	ci left: 1.086920e-01	ci right 1.119813e-01	k: 15446	n:140000
KS ci ratio: 1.029488e-01	ci left: 9.722025e-03	ci right 1.078412e-02	k: 1434	n:140000
KCNN4   140000 perm   29 sec   (4835 perm/sec)   p_kst 1.024286e-02   p_cons 1.103286e-01   p_joint 8.315714e-02

Joint ci ratio: 3.343764e-02	ci left: 8.252819e-02	ci right 8.534125e-02	k: 12589	n:150000
Cons ci ratio: 2.872427e-02	ci left: 1.088580e-01	ci right 1.120371e-01	k: 16566	n:150000
KS ci ratio: 9.934385e-02	ci left: 9.762692e-03	ci right 1.078970e-02	k: 1540	n:150000
KCNN4   150000 perm   32 sec   (4757 perm/sec)   p_kst 1.026667e-02   p_cons 1.104400e-01   p_joint 8.392667e-02

Outputting figure to mutsig2_images.part000000000089/KCNN4.2_1316_150000_0.010267_0.11044_0.083927.png
                gene_name: KCNN4
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.085 

Current progress: 85 percent done.
KCTD15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
KS ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
KCTD15   10000 perm   1 sec   (7719 perm/sec)   p_kst 9.386000e-01   p_cons 9.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCTD15.2_888_10000_0.9386_0.9395_1.png
                gene_name: KCTD15
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
KCTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
KS ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KCTD2   10000 perm   1 sec   (8046 perm/sec)   p_kst 2.686000e-01   p_cons 3.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCTD2.2_816_10000_0.2686_0.3115_1.png
                gene_name: KCTD2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
KCTD5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 90 percent done.
KCTD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
Cons ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KCTD7   10000 perm   1 sec   (7706 perm/sec)   p_kst 7.525000e-01   p_cons 2.354000e-01   p_joint 9.849000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD7.2_891_10000_0.7525_0.2354_0.9849.png
                gene_name: KCTD7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
KDELC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
KS ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KDELC2   10000 perm   1 sec   (7609 perm/sec)   p_kst 6.352000e-01   p_cons 8.491000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDELC2.2_1556_10000_0.6352_0.8491_1.png
                gene_name: KDELC2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KDM6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
Cons ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
KDM6A   10000 perm   2 sec   (5946 perm/sec)   p_kst 2.416000e-01   p_cons 1.485000e-01   p_joint 1.787000e-01

Outputting figure to mutsig2_images.part000000000089/KDM6A.2_4322_10000_0.2416_0.1485_0.1787.png
                gene_name: KDM6A
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 95 percent done.
KHDRBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
Cons ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
KHDRBS1   10000 perm   1 sec   (7731 perm/sec)   p_kst 3.331000e-01   p_cons 1.818000e-01   p_joint 1.650000e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS1.2_1368_10000_0.3331_0.1818_0.165.png
                gene_name: KHDRBS1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 97 percent done.
KHDRBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
Cons ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
KS ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
KHDRBS3   10000 perm   1 sec   (7585 perm/sec)   p_kst 7.585000e-01   p_cons 4.625000e-01   p_joint 8.607000e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS3.2_1077_10000_0.7585_0.4625_0.8607.png
                gene_name: KHDRBS3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 98 percent done.
KHK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
KHK   10000 perm   1 sec   (7837 perm/sec)   p_kst 7.809000e-01   p_cons 9.027000e-01   p_joint 8.219000e-01

Outputting figure to mutsig2_images.part000000000089/KHK.2_1068_10000_0.7809_0.9027_0.8219.png
                gene_name: KHK
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000089
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 89 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 4422106: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000090> was used as the working directory.
Started at Wed Oct 24 17:57:46 2012
Results reported at Wed Oct 24 18:44:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000090.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000090.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 90  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000090.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2792.97 sec.
    Max Memory :      5255 MB
    Max Swap   :      7714 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
90
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 90
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 90: processing genes 8053 - 8142
Calculating significance of each gene.
Using projection method.
8053	KHNYN	5.587032e-01
8054	KHSRP	1
8055	KIAA0020	8.045554e-01
8056	KIAA0090	8.035289e-01
8057	KIAA0100	9.999966e-01
8058	KIAA0101	1
8059	KIAA0141	9.098553e-01
8060	KIAA0146	9.737828e-01
8061	KIAA0174	2.064364e-01
8062	KIAA0182	9.735965e-01
8063	KIAA0195	9.997710e-01
8064	KIAA0196	9.988364e-01
8065	KIAA0226	8.973142e-01
In gene KIAA0232 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 4220    n = 1	mu =   7.03e-07
8066	KIAA0232	6.258876e-01
8067	KIAA0240	8.999446e-01
8068	KIAA0247	6.071764e-01
8069	KIAA0284	8.291162e-01
8070	KIAA0317	4.934418e-01
8071	KIAA0319	8.856904e-01
8072	KIAA0319L	9.388789e-01
8073	KIAA0355	9.065238e-01
8074	KIAA0368	9.762872e-01
8075	KIAA0391	2.068314e-01
8076	KIAA0406	9.650200e-01
8077	KIAA0408	1
8078	KIAA0415	8.219256e-01
8079	KIAA0427	9.196337e-01
8080	KIAA0430	9.961048e-01
8081	KIAA0467	9.999688e-01
8082	KIAA0494	6.997701e-01
8083	KIAA0495	5.757292e-01
8084	KIAA0513	5.595413e-01
8085	KIAA0528	9.714390e-01
8086	KIAA0556	9.920455e-01
8087	KIAA0562	9.980098e-01
8088	KIAA0564	9.473065e-01
8089	KIAA0586	9.942023e-01
8090	KIAA0649	8.621536e-01
8091	KIAA0652	4.226630e-01
8092	KIAA0664	1
8093	KIAA0748	2.507036e-02
8094	KIAA0753	9.926857e-01
8095	KIAA0754	7.663350e-01
8096	KIAA0776	7.738372e-01
8097	KIAA0802	9.991545e-01
8098	KIAA0831	7.649386e-01
8099	KIAA0892	1
8100	KIAA0895	2.346228e-02
8101	KIAA0895L	1
8102	KIAA0907	5.056962e-02
8103	KIAA0913	9.993009e-01
8104	KIAA0922	1
8105	KIAA0947	9.981052e-01
8106	KIAA1009	5.448788e-01
8107	KIAA1012	9.962111e-01
8108	KIAA1024	8.883825e-01
8109	KIAA1033	8.676821e-01
8110	KIAA1045	6.837632e-01
In gene KIAA1109 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 15354   n = 1	mu =   6.02e-07
8111	KIAA1109	9.999912e-01
8112	KIAA1143	1
8113	KIAA1147	1
8114	KIAA1161	1
8115	KIAA1191	6.864801e-01
8116	KIAA1199	9.993969e-01
8117	KIAA1210	8.999839e-01
8118	KIAA1211	9.732657e-01
8119	KIAA1217	1
8120	KIAA1244	9.999541e-01
8121	KIAA1257	5.119234e-01
8122	KIAA1267	9.692937e-01
8123	KIAA1274	9.522158e-01
8124	KIAA1279	9.005155e-01
8125	KIAA1310	7.640647e-01
8126	KIAA1324	6.418837e-01
8127	KIAA1324L	8.400143e-01
8128	KIAA1328	7.796195e-01
8129	KIAA1370	7.754493e-01
8130	KIAA1377	4.192031e-01
8131	KIAA1383	6.960925e-01
8132	KIAA1407	3.241666e-01
8133	KIAA1409	1
8134	KIAA1429	9.992352e-01
8135	KIAA1430	6.049044e-01
8136	KIAA1432	9.626114e-01
8137	KIAA1462	9.992947e-01
8138	KIAA1467	9.157746e-01
8139	KIAA1468	3.658837e-01
8140	KIAA1486	1
8141	KIAA1522	8.583463e-01
8142	KIAA1524	3.839474e-01
Done

Running MutSig 2:
Scatter job 90: processing genes 8053 - 8142
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIAA1109
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
Cons ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
KS ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
KIAA1109   10000 perm   5 sec   (2077 perm/sec)   p_kst 4.234000e-01   p_cons 5.470000e-01   p_joint 5.550000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1109.34_15354_10000_0.4234_0.547_0.555.png
                gene_name: KIAA1109
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 1 percent done.
KIAA1409
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.693157e-02	ci left: 8.355163e-01	ci right 8.498835e-01	k: 8428	n:10000
Cons ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
KS ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
KIAA1409   10000 perm   3 sec   (3411 perm/sec)   p_kst 7.584000e-01   p_cons 8.962000e-01   p_joint 8.428000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1409.30_7565_10000_0.7584_0.8962_0.8428.png
                gene_name: KIAA1409
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 3 percent done.
KIAA1211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
KIAA1211   10000 perm   2 sec   (4218 perm/sec)   p_kst 6.732000e-01   p_cons 1.660000e-02   p_joint 5.050000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
KS ci ratio: 2.022964e-02	ci left: 6.458036e-01	ci right 6.590520e-01	k: 13049	n:20000
KIAA1211   20000 perm   5 sec   (3875 perm/sec)   p_kst 6.524500e-01   p_cons 1.380000e-02   p_joint 5.720000e-02

Joint ci ratio: 8.723155e-02	ci left: 6.030907e-02	ci right 6.584259e-02	k: 1891	n:30000
Cons ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
KS ci ratio: 1.601374e-02	ci left: 6.609985e-01	ci right 6.717026e-01	k: 19991	n:30000
KIAA1211   30000 perm   8 sec   (3751 perm/sec)   p_kst 6.663667e-01   p_cons 1.496667e-02   p_joint 6.303333e-02

Joint ci ratio: 9.218437e-02	ci left: 4.125280e-02	ci right 4.526385e-02	k: 1729	n:40000
Cons ci ratio: 1.712816e-01	ci left: 1.181713e-02	ci right 1.405441e-02	k: 516	n:40000
KS ci ratio: 1.385488e-02	ci left: 6.621563e-01	ci right 6.714195e-01	k: 26672	n:40000
KIAA1211   40000 perm   11 sec   (3668 perm/sec)   p_kst 6.668000e-01   p_cons 1.290000e-02   p_joint 4.322500e-02

Joint ci ratio: 9.688852e-02	ci left: 3.016204e-02	ci right 3.325265e-02	k: 1584	n:50000
Cons ci ratio: 1.512260e-01	ci left: 1.225646e-02	ci right 1.428063e-02	k: 662	n:50000
KS ci ratio: 1.238944e-02	ci left: 6.627492e-01	ci right 6.710315e-01	k: 33345	n:50000
KIAA1211   50000 perm   14 sec   (3602 perm/sec)   p_kst 6.669000e-01   p_cons 1.324000e-02   p_joint 3.168000e-02

Joint ci ratio: 7.378018e-02	ci left: 4.327310e-02	ci right 4.660443e-02	k: 2695	n:60000
Cons ci ratio: 1.385450e-01	ci left: 1.225376e-02	ci right 1.409377e-02	k: 789	n:60000
KS ci ratio: 1.131253e-02	ci left: 6.630121e-01	ci right 6.705718e-01	k: 40008	n:60000
KIAA1211   60000 perm   17 sec   (3542 perm/sec)   p_kst 6.668000e-01   p_cons 1.315000e-02   p_joint 4.491667e-02

Joint ci ratio: 5.393314e-02	ci left: 6.827576e-02	ci right 7.207425e-02	k: 4911	n:70000
Cons ci ratio: 1.279634e-01	ci left: 1.238144e-02	ci right 1.408783e-02	k: 925	n:70000
KS ci ratio: 1.047507e-02	ci left: 6.632226e-01	ci right 6.702207e-01	k: 46671	n:70000
KIAA1211   70000 perm   20 sec   (3482 perm/sec)   p_kst 6.667286e-01   p_cons 1.321429e-02   p_joint 7.015714e-02

Joint ci ratio: 5.599452e-02	ci left: 5.610635e-02	ci right 5.935081e-02	k: 4617	n:80000
Cons ci ratio: 1.171068e-01	ci left: 1.300302e-02	ci right 1.463252e-02	k: 1104	n:80000
KS ci ratio: 9.801929e-03	ci left: 6.632959e-01	ci right 6.698420e-01	k: 53326	n:80000
KIAA1211   80000 perm   23 sec   (3421 perm/sec)   p_kst 6.665750e-01   p_cons 1.380000e-02   p_joint 5.771250e-02

Joint ci ratio: 5.380665e-02	ci left: 5.418851e-02	ci right 5.719577e-02	k: 5011	n:90000
Cons ci ratio: 1.112346e-01	ci left: 1.285345e-02	ci right 1.437813e-02	k: 1224	n:90000
KS ci ratio: 9.230214e-03	ci left: 6.640214e-01	ci right 6.701900e-01	k: 60040	n:90000
KIAA1211   90000 perm   27 sec   (3374 perm/sec)   p_kst 6.671111e-01   p_cons 1.360000e-02   p_joint 5.567778e-02

Joint ci ratio: 5.152184e-02	ci left: 5.330843e-02	ci right 5.613746e-02	k: 5471	n:100000
Cons ci ratio: 1.056095e-01	ci left: 1.287179e-02	ci right 1.431663e-02	k: 1358	n:100000
KS ci ratio: 8.756579e-03	ci left: 6.641794e-01	ci right 6.700309e-01	k: 66711	n:100000
KIAA1211   100000 perm   30 sec   (3328 perm/sec)   p_kst 6.671100e-01   p_cons 1.358000e-02   p_joint 5.471000e-02

Joint ci ratio: 4.786346e-02	ci left: 5.609547e-02	ci right 5.885519e-02	k: 6321	n:110000
Cons ci ratio: 1.002167e-01	ci left: 1.303023e-02	ci right 1.441377e-02	k: 1508	n:110000
KS ci ratio: 8.342088e-03	ci left: 6.646888e-01	ci right 6.702660e-01	k: 73423	n:110000
KIAA1211   110000 perm   33 sec   (3286 perm/sec)   p_kst 6.674818e-01   p_cons 1.370909e-02   p_joint 5.746364e-02

Joint ci ratio: 4.447877e-02	ci left: 5.943793e-02	ci right 6.215001e-02	k: 7294	n:120000
Cons ci ratio: 9.610368e-02	ci left: 1.301737e-02	ci right 1.433962e-02	k: 1640	n:120000
KS ci ratio: 7.980172e-03	ci left: 6.651854e-01	ci right 6.705232e-01	k: 80143	n:120000
KIAA1211   120000 perm   37 sec   (3245 perm/sec)   p_kst 6.678583e-01   p_cons 1.366667e-02   p_joint 6.078333e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1211.20_3734_120000_0.66786_0.013667_0.060783.png
                gene_name: KIAA1211
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 4 percent done.
KIAA0467
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
Cons ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
KS ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
KIAA0467   10000 perm   3 sec   (3618 perm/sec)   p_kst 3.230000e-02   p_cons 8.347000e-01   p_joint 9.570000e-02

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 1.156943e-02	ci left: 8.466478e-01	ci right 8.565498e-01	k: 17033	n:20000
KS ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
KIAA0467   20000 perm   6 sec   (3336 perm/sec)   p_kst 3.300000e-02   p_cons 8.516500e-01   p_joint 6.905000e-02

Joint ci ratio: 6.562196e-02	ci left: 1.028009e-01	ci right 1.098088e-01	k: 3188	n:30000
Cons ci ratio: 9.393192e-03	ci left: 8.490096e-01	ci right 8.570553e-01	k: 25592	n:30000
KS ci ratio: 1.236128e-01	ci left: 3.042513e-02	ci right 3.446608e-02	k: 972	n:30000
KIAA0467   30000 perm   9 sec   (3225 perm/sec)   p_kst 3.240000e-02   p_cons 8.530667e-01   p_joint 1.062667e-01

Joint ci ratio: 4.413146e-02	ci left: 1.611019e-01	ci right 1.683969e-01	k: 6589	n:40000
Cons ci ratio: 8.150599e-03	ci left: 8.490626e-01	ci right 8.560361e-01	k: 34103	n:40000
KS ci ratio: 1.038023e-01	ci left: 3.263531e-02	ci right 3.623269e-02	k: 1376	n:40000
KIAA0467   40000 perm   13 sec   (3162 perm/sec)   p_kst 3.440000e-02   p_cons 8.525750e-01   p_joint 1.647250e-01

Joint ci ratio: 4.479022e-02	ci left: 1.298566e-01	ci right 1.358261e-01	k: 6641	n:50000
Cons ci ratio: 7.240561e-03	ci left: 8.511568e-01	ci right 8.573620e-01	k: 42714	n:50000
KS ci ratio: 9.196895e-02	ci left: 3.344528e-02	ci right 3.668899e-02	k: 1752	n:50000
KIAA0467   50000 perm   16 sec   (3114 perm/sec)   p_kst 3.504000e-02   p_cons 8.542800e-01   p_joint 1.328200e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0467.15_7822_50000_0.03504_0.85428_0.13282.png
                gene_name: KIAA0467
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 5 percent done.
KIAA1429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
Cons ci ratio: 8.154559e-02	ci left: 1.799903e-01	ci right 1.953921e-01	k: 1876	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
KIAA1429   10000 perm   3 sec   (3921 perm/sec)   p_kst 9.602000e-01   p_cons 1.876000e-01   p_joint 6.862000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1429.17_5589_10000_0.9602_0.1876_0.6862.png
                gene_name: KIAA1429
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 6 percent done.
KIAA0802
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
Cons ci ratio: 2.424458e-02	ci left: 7.144176e-01	ci right 7.320522e-01	k: 7233	n:10000
KS ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
KIAA0802   10000 perm   2 sec   (4202 perm/sec)   p_kst 1.712000e-01   p_cons 7.233000e-01   p_joint 3.722000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0802.15_4817_10000_0.1712_0.7233_0.3722.png
                gene_name: KIAA0802
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
KIAA0947
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
Cons ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
KS ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KIAA0947   10000 perm   3 sec   (3676 perm/sec)   p_kst 4.103000e-01   p_cons 9.503000e-01   p_joint 6.940000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0947.14_6877_10000_0.4103_0.9503_0.694.png
                gene_name: KIAA0947
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 9 percent done.
KIAA1210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.636551e-02	ci left: 6.793193e-01	ci right 6.975708e-01	k: 6885	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KIAA1210   10000 perm   2 sec   (4119 perm/sec)   p_kst 4.509000e-01   p_cons 8.567000e-01   p_joint 6.885000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1210.14_5186_10000_0.4509_0.8567_0.6885.png
                gene_name: KIAA1210
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 10 percent done.
KIAA1267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
Cons ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
KS ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
KIAA1267   10000 perm   2 sec   (4802 perm/sec)   p_kst 7.916000e-01   p_cons 7.270000e-01   p_joint 8.649000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1267.11_3374_10000_0.7916_0.727_0.8649.png
                gene_name: KIAA1267
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
KIAA0406
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
KS ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
KIAA0406   10000 perm   2 sec   (4660 perm/sec)   p_kst 3.810000e-02   p_cons 7.104000e-01   p_joint 7.940000e-02

Joint ci ratio: 6.934809e-02	ci left: 1.329523e-01	ci right 1.425533e-01	k: 2754	n:20000
Cons ci ratio: 1.767801e-02	ci left: 7.045114e-01	ci right 7.171272e-01	k: 14217	n:20000
KS ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
KIAA0406   20000 perm   5 sec   (4272 perm/sec)   p_kst 3.755000e-02   p_cons 7.108500e-01   p_joint 1.377000e-01

Joint ci ratio: 7.297905e-02	ci left: 8.452258e-02	ci right 9.095751e-02	k: 2631	n:30000
Cons ci ratio: 1.438442e-02	ci left: 7.071069e-01	ci right 7.173853e-01	k: 21368	n:30000
KS ci ratio: 1.124937e-01	ci left: 3.670766e-02	ci right 4.111554e-02	k: 1166	n:30000
KIAA0406   30000 perm   7 sec   (4113 perm/sec)   p_kst 3.886667e-02   p_cons 7.122667e-01   p_joint 8.770000e-02

Joint ci ratio: 6.034524e-02	ci left: 9.253808e-02	ci right 9.832080e-02	k: 3816	n:40000
Cons ci ratio: 1.172274e-02	ci left: 7.321784e-01	ci right 7.408372e-01	k: 29461	n:40000
KS ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
KIAA0406   40000 perm   10 sec   (3996 perm/sec)   p_kst 3.995000e-02   p_cons 7.365250e-01   p_joint 9.540000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0406.9_3298_40000_0.03995_0.73652_0.0954.png
                gene_name: KIAA0406
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 13 percent done.
KIAA0556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 5.904794e-02	ci left: 2.967772e-01	ci right 3.149361e-01	k: 3058	n:10000
KS ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
KIAA0556   10000 perm   2 sec   (4255 perm/sec)   p_kst 9.747000e-01   p_cons 3.058000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0556.9_4969_10000_0.9747_0.3058_0.7418.png
                gene_name: KIAA0556
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 14 percent done.
KIAA1274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
KIAA1274   10000 perm   2 sec   (4834 perm/sec)   p_kst 4.901000e-01   p_cons 2.106000e-01   p_joint 3.143000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1274.9_2647_10000_0.4901_0.2106_0.3143.png
                gene_name: KIAA1274
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 15 percent done.
KIAA1407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
Cons ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
KS ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
KIAA1407   10000 perm   2 sec   (4991 perm/sec)   p_kst 2.956000e-01   p_cons 8.792000e-01   p_joint 5.272000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1407.9_2879_10000_0.2956_0.8792_0.5272.png
                gene_name: KIAA1407
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 16 percent done.
KIAA1432
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
KS ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
KIAA1432   10000 perm   2 sec   (4611 perm/sec)   p_kst 1.859000e-01   p_cons 1.087000e-01   p_joint 1.811000e-01

Joint ci ratio: 5.633580e-02	ci left: 1.893803e-01	ci right 2.004086e-01	k: 3897	n:20000
Cons ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
KS ci ratio: 5.802403e-02	ci left: 1.803811e-01	ci right 1.912104e-01	k: 3715	n:20000
KIAA1432   20000 perm   5 sec   (4206 perm/sec)   p_kst 1.857500e-01   p_cons 1.087000e-01   p_joint 1.948500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1432.9_4209_20000_0.18575_0.1087_0.19485.png
                gene_name: KIAA1432
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 18 percent done.
KIAA1468
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
Cons ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
KIAA1468   10000 perm   2 sec   (4533 perm/sec)   p_kst 3.709000e-01   p_cons 4.582000e-01   p_joint 5.178000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1468.9_3767_10000_0.3709_0.4582_0.5178.png
                gene_name: KIAA1468
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 19 percent done.
KIAA0100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
Cons ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
KS ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KIAA0100   10000 perm   2 sec   (4056 perm/sec)   p_kst 2.892000e-01   p_cons 3.263000e-01   p_joint 3.011000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0100.8_6864_10000_0.2892_0.3263_0.3011.png
                gene_name: KIAA0100
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 20 percent done.
KIAA0368
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KIAA0368   10000 perm   3 sec   (3894 perm/sec)   p_kst 1.175000e-01   p_cons 1.080000e-02   p_joint 3.960000e-02

Joint ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
Cons ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
KS ci ratio: 7.590801e-02	ci left: 1.131663e-01	ci right 1.221451e-01	k: 2352	n:20000
KIAA0368   20000 perm   6 sec   (3595 perm/sec)   p_kst 1.176000e-01   p_cons 1.065000e-02   p_joint 4.020000e-02

Joint ci ratio: 1.279587e-01	ci left: 2.838926e-02	ci right 3.230240e-02	k: 909	n:30000
Cons ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
KS ci ratio: 6.176599e-02	ci left: 1.146987e-01	ci right 1.220421e-01	k: 3550	n:30000
KIAA0368   30000 perm   9 sec   (3477 perm/sec)   p_kst 1.183333e-01   p_cons 1.053333e-02   p_joint 3.030000e-02

Joint ci ratio: 1.432551e-01	ci left: 1.705728e-02	ci right 1.971329e-02	k: 734	n:40000
Cons ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
KS ci ratio: 5.354669e-02	ci left: 1.149773e-01	ci right 1.213282e-01	k: 4725	n:40000
KIAA0368   40000 perm   12 sec   (3391 perm/sec)   p_kst 1.181250e-01   p_cons 1.025000e-02   p_joint 1.835000e-02

Joint ci ratio: 1.131040e-01	ci left: 2.213158e-02	ci right 2.480414e-02	k: 1172	n:50000
Cons ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
KS ci ratio: 4.777228e-02	ci left: 1.158376e-01	ci right 1.215267e-01	k: 5933	n:50000
KIAA0368   50000 perm   15 sec   (3324 perm/sec)   p_kst 1.186600e-01   p_cons 9.160000e-03   p_joint 2.344000e-02

Joint ci ratio: 1.028611e-01	ci left: 2.241637e-02	ci right 2.486334e-02	k: 1417	n:60000
Cons ci ratio: 1.566142e-01	ci left: 9.523568e-03	ci right 1.115765e-02	k: 619	n:60000
KS ci ratio: 4.375582e-02	ci left: 1.153958e-01	ci right 1.205745e-01	k: 7078	n:60000
KIAA0368   60000 perm   18 sec   (3266 perm/sec)   p_kst 1.179667e-01   p_cons 1.031667e-02   p_joint 2.361667e-02

Joint ci ratio: 8.874951e-02	ci left: 2.590962e-02	ci right 2.832979e-02	k: 1897	n:70000
Cons ci ratio: 1.459512e-01	ci left: 9.455103e-03	ci right 1.095734e-02	k: 713	n:70000
KS ci ratio: 4.065203e-02	ci left: 1.148684e-01	ci right 1.196491e-01	k: 8207	n:70000
KIAA0368   70000 perm   22 sec   (3210 perm/sec)   p_kst 1.172429e-01   p_cons 1.018571e-02   p_joint 2.710000e-02

Joint ci ratio: 8.873657e-02	ci left: 2.275481e-02	ci right 2.487992e-02	k: 1904	n:80000
Cons ci ratio: 1.366943e-01	ci left: 9.479057e-03	ci right 1.088181e-02	k: 813	n:80000
KS ci ratio: 3.794082e-02	ci left: 1.154870e-01	ci right 1.199658e-01	k: 9417	n:80000
KIAA0368   80000 perm   25 sec   (3158 perm/sec)   p_kst 1.177125e-01   p_cons 1.016250e-02   p_joint 2.380000e-02

Joint ci ratio: 7.793051e-02	ci left: 2.627777e-02	ci right 2.841950e-02	k: 2460	n:90000
Cons ci ratio: 1.283643e-01	ci left: 9.596849e-03	ci right 1.092389e-02	k: 922	n:90000
KS ci ratio: 3.575997e-02	ci left: 1.156786e-01	ci right 1.199016e-01	k: 10600	n:90000
KIAA0368   90000 perm   29 sec   (3118 perm/sec)   p_kst 1.177778e-01   p_cons 1.024444e-02   p_joint 2.733333e-02

Joint ci ratio: 6.917852e-02	ci left: 3.003273e-02	ci right 3.219458e-02	k: 3110	n:100000
Cons ci ratio: 1.219308e-01	ci left: 9.605872e-03	ci right 1.086278e-02	k: 1022	n:100000
KS ci ratio: 3.390678e-02	ci left: 1.158974e-01	ci right 1.199048e-01	k: 11789	n:100000
KIAA0368   100000 perm   32 sec   (3080 perm/sec)   p_kst 1.178900e-01   p_cons 1.022000e-02   p_joint 3.110000e-02

Joint ci ratio: 6.953286e-02	ci left: 2.710450e-02	ci right 2.906594e-02	k: 3088	n:110000
Cons ci ratio: 1.160119e-01	ci left: 9.676420e-03	ci right 1.087688e-02	k: 1129	n:110000
KS ci ratio: 3.207148e-02	ci left: 1.176518e-01	ci right 1.214956e-01	k: 13152	n:110000
KIAA0368   110000 perm   36 sec   (3043 perm/sec)   p_kst 1.195636e-01   p_cons 1.026364e-02   p_joint 2.807273e-02

Joint ci ratio: 7.009549e-02	ci left: 2.450893e-02	ci right 2.629744e-02	k: 3047	n:120000
Cons ci ratio: 1.105634e-01	ci left: 9.793173e-03	ci right 1.094734e-02	k: 1243	n:120000
KS ci ratio: 3.079727e-02	ci left: 1.171151e-01	ci right 1.207866e-01	k: 14273	n:120000
KIAA0368   120000 perm   40 sec   (3008 perm/sec)   p_kst 1.189417e-01   p_cons 1.035833e-02   p_joint 2.539167e-02

Joint ci ratio: 6.758750e-02	ci left: 2.436990e-02	ci right 2.608214e-02	k: 3278	n:130000
Cons ci ratio: 1.065727e-01	ci left: 9.750767e-03	ci right 1.085586e-02	k: 1338	n:130000
KS ci ratio: 2.960047e-02	ci left: 1.171070e-01	ci right 1.206331e-01	k: 15452	n:130000
KIAA0368   130000 perm   44 sec   (2974 perm/sec)   p_kst 1.188615e-01   p_cons 1.029231e-02   p_joint 2.521538e-02

Joint ci ratio: 6.705553e-02	ci left: 2.302894e-02	ci right 2.463372e-02	k: 3335	n:140000
Cons ci ratio: 1.060540e-01	ci left: 9.151474e-03	ci right 1.018327e-02	k: 1352	n:140000
KS ci ratio: 2.854680e-02	ci left: 1.170030e-01	ci right 1.203985e-01	k: 16617	n:140000
KIAA0368   140000 perm   48 sec   (2941 perm/sec)   p_kst 1.186929e-01   p_cons 9.657143e-03   p_joint 2.382143e-02

Joint ci ratio: 6.033964e-02	ci left: 2.654027e-02	ci right 2.819806e-02	k: 4104	n:150000
Cons ci ratio: 1.021256e-01	ci left: 9.229666e-03	ci right 1.022942e-02	k: 1458	n:150000
KS ci ratio: 2.760083e-02	ci left: 1.168950e-01	ci right 1.201731e-01	k: 17779	n:150000
KIAA0368   150000 perm   52 sec   (2908 perm/sec)   p_kst 1.185267e-01   p_cons 9.720000e-03   p_joint 2.736000e-02

Joint ci ratio: 6.146927e-02	ci left: 2.402502e-02	ci right 2.555477e-02	k: 3965	n:160000
Cons ci ratio: 9.876313e-02	ci left: 9.268214e-03	ci right 1.023717e-02	k: 1559	n:160000
KS ci ratio: 2.673825e-02	ci left: 1.168394e-01	ci right 1.200120e-01	k: 18947	n:160000
KIAA0368   160000 perm   56 sec   (2874 perm/sec)   p_kst 1.184188e-01   p_cons 9.743750e-03   p_joint 2.478125e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0368.8_6258_160000_0.11842_0.0097438_0.024781.png
                gene_name: KIAA0368
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0093 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 22 percent done.
KIAA0564
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
KS ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
KIAA0564   10000 perm   2 sec   (4082 perm/sec)   p_kst 9.753000e-01   p_cons 7.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0564.8_5902_10000_0.9753_0.7443_1.png
                gene_name: KIAA0564
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
KIAA0748
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KIAA0748   10000 perm   2 sec   (5040 perm/sec)   p_kst 4.660000e-02   p_cons 2.120000e-02   p_joint 4.310000e-02

Joint ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
KIAA0748   20000 perm   4 sec   (4563 perm/sec)   p_kst 4.620000e-02   p_cons 1.990000e-02   p_joint 1.335000e-02

Joint ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
Cons ci ratio: 1.541510e-01	ci left: 1.947147e-02	ci right 2.275552e-02	k: 632	n:30000
KS ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
KIAA0748   30000 perm   7 sec   (4368 perm/sec)   p_kst 4.553333e-02   p_cons 2.106667e-02   p_joint 1.853333e-02

Joint ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
Cons ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
KS ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
KIAA0748   40000 perm   9 sec   (4249 perm/sec)   p_kst 4.610000e-02   p_cons 2.207500e-02   p_joint 2.457500e-02

Joint ci ratio: 1.008325e-01	ci left: 2.785867e-02	ci right 3.083631e-02	k: 1466	n:50000
Cons ci ratio: 1.152866e-01	ci left: 2.129561e-02	ci right 2.392022e-02	k: 1129	n:50000
KS ci ratio: 7.981665e-02	ci left: 4.418022e-02	ci right 4.787272e-02	k: 2300	n:50000
KIAA0748   50000 perm   12 sec   (4140 perm/sec)   p_kst 4.600000e-02   p_cons 2.258000e-02   p_joint 2.932000e-02

Joint ci ratio: 9.708973e-02	ci left: 2.516434e-02	ci right 2.774841e-02	k: 1586	n:60000
Cons ci ratio: 1.088266e-01	ci left: 2.001358e-02	ci right 2.233306e-02	k: 1269	n:60000
KS ci ratio: 7.294830e-02	ci left: 4.423920e-02	ci right 4.760490e-02	k: 2754	n:60000
KIAA0748   60000 perm   15 sec   (4045 perm/sec)   p_kst 4.590000e-02   p_cons 2.115000e-02   p_joint 2.643333e-02

Joint ci ratio: 8.734063e-02	ci left: 2.674839e-02	ci right 2.920523e-02	k: 1957	n:70000
Cons ci ratio: 1.004313e-01	ci left: 2.022922e-02	ci right 2.238215e-02	k: 1490	n:70000
KS ci ratio: 6.783810e-02	ci left: 4.398197e-02	ci right 4.708441e-02	k: 3186	n:70000
KIAA0748   70000 perm   18 sec   (3969 perm/sec)   p_kst 4.551429e-02   p_cons 2.128571e-02   p_joint 2.795714e-02

Joint ci ratio: 8.416409e-02	ci left: 2.528775e-02	ci right 2.752177e-02	k: 2111	n:80000
Cons ci ratio: 9.465689e-02	ci left: 1.999315e-02	ci right 2.199180e-02	k: 1678	n:80000
KS ci ratio: 6.354169e-02	ci left: 4.396767e-02	ci right 4.686541e-02	k: 3632	n:80000
KIAA0748   80000 perm   21 sec   (3902 perm/sec)   p_kst 4.540000e-02   p_cons 2.097500e-02   p_joint 2.638750e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0748.8_1602_80000_0.0454_0.020975_0.026388.png
                gene_name: KIAA0748
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 24 percent done.
KIAA0895
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
Cons ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
KIAA0895   10000 perm   2 sec   (5421 perm/sec)   p_kst 9.345000e-01   p_cons 5.176000e-01   p_joint 8.189000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0895.8_1620_10000_0.9345_0.5176_0.8189.png
                gene_name: KIAA0895
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 25 percent done.
KIAA0907
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KIAA0907   10000 perm   2 sec   (5319 perm/sec)   p_kst 1.390000e-02   p_cons 4.354000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.535677e-01	ci left: 2.912262e-02	ci right 3.401482e-02	k: 630	n:20000
Cons ci ratio: 3.236387e-02	ci left: 4.162395e-01	ci right 4.299828e-01	k: 8462	n:20000
KS ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KIAA0907   20000 perm   4 sec   (4828 perm/sec)   p_kst 1.420000e-02   p_cons 4.231000e-01   p_joint 3.150000e-02

Joint ci ratio: 1.499689e-01	ci left: 2.059463e-02	ci right 2.396544e-02	k: 667	n:30000
Cons ci ratio: 2.635734e-02	ci left: 4.187647e-01	ci right 4.299833e-01	k: 12731	n:30000
KS ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
KIAA0907   30000 perm   6 sec   (4654 perm/sec)   p_kst 1.380000e-02   p_cons 4.243667e-01   p_joint 2.223333e-02

Joint ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
Cons ci ratio: 2.295621e-02	ci left: 4.167540e-01	ci right 4.264573e-01	k: 16864	n:40000
KS ci ratio: 1.644846e-01	ci left: 1.284752e-02	ci right 1.517383e-02	k: 559	n:40000
KIAA0907   40000 perm   9 sec   (4533 perm/sec)   p_kst 1.397500e-02   p_cons 4.216000e-01   p_joint 3.220000e-02

Joint ci ratio: 1.046418e-01	ci left: 2.586966e-02	ci right 2.874558e-02	k: 1364	n:50000
Cons ci ratio: 1.961697e-02	ci left: 4.396383e-01	ci right 4.483682e-01	k: 22200	n:50000
KS ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
KIAA0907   50000 perm   11 sec   (4423 perm/sec)   p_kst 1.432000e-02   p_cons 4.440000e-01   p_joint 2.728000e-02

Joint ci ratio: 9.850138e-02	ci left: 2.444850e-02	ci right 2.699766e-02	k: 1542	n:60000
Cons ci ratio: 1.788069e-02	ci left: 4.407682e-01	ci right 4.487372e-01	k: 26685	n:60000
KS ci ratio: 1.313210e-01	ci left: 1.367158e-02	ci right 1.560912e-02	k: 877	n:60000
KIAA0907   60000 perm   14 sec   (4333 perm/sec)   p_kst 1.461667e-02   p_cons 4.447500e-01   p_joint 2.570000e-02

Joint ci ratio: 8.371518e-02	ci left: 2.909853e-02	ci right 3.165488e-02	k: 2125	n:70000
Cons ci ratio: 1.658289e-02	ci left: 4.402147e-01	ci right 4.475900e-01	k: 31073	n:70000
KS ci ratio: 1.230094e-01	ci left: 1.341967e-02	ci right 1.519235e-02	k: 1000	n:70000
KIAA0907   70000 perm   16 sec   (4250 perm/sec)   p_kst 1.428571e-02   p_cons 4.439000e-01   p_joint 3.035714e-02

Joint ci ratio: 7.748535e-02	ci left: 2.979751e-02	ci right 3.221166e-02	k: 2479	n:80000
Cons ci ratio: 1.552056e-02	ci left: 4.401782e-01	ci right 4.470759e-01	k: 35490	n:80000
KS ci ratio: 1.154752e-01	ci left: 1.337940e-02	ci right 1.503111e-02	k: 1135	n:80000
KIAA0907   80000 perm   19 sec   (4163 perm/sec)   p_kst 1.418750e-02   p_cons 4.436250e-01   p_joint 3.098750e-02

Joint ci ratio: 9.102852e-02	ci left: 1.926909e-02	ci right 2.111757e-02	k: 1816	n:90000
Cons ci ratio: 1.530069e-02	ci left: 4.184929e-01	ci right 4.249566e-01	k: 37955	n:90000
KS ci ratio: 1.097898e-01	ci left: 1.319931e-02	ci right 1.474336e-02	k: 1256	n:90000
KIAA0907   90000 perm   22 sec   (4083 perm/sec)   p_kst 1.395556e-02   p_cons 4.217222e-01   p_joint 2.017778e-02

Joint ci ratio: 7.291572e-02	ci left: 2.706479e-02	ci right 2.912270e-02	k: 2808	n:100000
Cons ci ratio: 1.454869e-02	ci left: 4.175477e-01	ci right 4.236769e-01	k: 42061	n:100000
KS ci ratio: 1.061253e-01	ci left: 1.274519e-02	ci right 1.418324e-02	k: 1345	n:100000
KIAA0907   100000 perm   25 sec   (4011 perm/sec)   p_kst 1.345000e-02   p_cons 4.206100e-01   p_joint 2.808000e-02

Joint ci ratio: 6.864621e-02	ci left: 2.780168e-02	ci right 2.978690e-02	k: 3166	n:110000
Cons ci ratio: 1.387970e-02	ci left: 4.174079e-01	ci right 4.232509e-01	k: 46236	n:110000
KS ci ratio: 1.007939e-01	ci left: 1.287952e-02	ci right 1.425540e-02	k: 1491	n:110000
KIAA0907   110000 perm   28 sec   (3941 perm/sec)   p_kst 1.355455e-02   p_cons 4.203273e-01   p_joint 2.878182e-02

Joint ci ratio: 6.959342e-02	ci left: 2.486116e-02	ci right 2.666186e-02	k: 3090	n:120000
Cons ci ratio: 1.328048e-02	ci left: 4.178380e-01	ci right 4.234325e-01	k: 50476	n:120000
KS ci ratio: 9.700667e-02	ci left: 1.277333e-02	ci right 1.408367e-02	k: 1610	n:120000
KIAA0907   120000 perm   31 sec   (3876 perm/sec)   p_kst 1.341667e-02   p_cons 4.206333e-01   p_joint 2.575000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0907.7_1901_120000_0.013417_0.42063_0.02575.png
                gene_name: KIAA0907
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 27 percent done.
KIAA1244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KIAA1244   10000 perm   2 sec   (4062 perm/sec)   p_kst 8.441000e-01   p_cons 2.350000e-02   p_joint 7.540000e-02

Joint ci ratio: 8.567560e-02	ci left: 9.067620e-02	ci right 9.884206e-02	k: 1894	n:20000
Cons ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
KS ci ratio: 1.217217e-02	ci left: 8.331740e-01	ci right 8.434275e-01	k: 16767	n:20000
KIAA1244   20000 perm   5 sec   (3711 perm/sec)   p_kst 8.383500e-01   p_cons 2.260000e-02   p_joint 9.470000e-02

Joint ci ratio: 6.832653e-02	ci left: 9.547854e-02	ci right 1.022660e-01	k: 2965	n:30000
Cons ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
KS ci ratio: 1.040701e-02	ci left: 8.211234e-01	ci right 8.297468e-01	k: 24764	n:30000
KIAA1244   30000 perm   8 sec   (3580 perm/sec)   p_kst 8.254667e-01   p_cons 2.333333e-02   p_joint 9.883333e-02

Joint ci ratio: 6.563370e-02	ci left: 7.918144e-02	ci right 8.457944e-02	k: 3274	n:40000
Cons ci ratio: 1.255255e-01	ci left: 2.230417e-02	ci right 2.531551e-02	k: 951	n:40000
KS ci ratio: 9.006941e-03	ci left: 8.218958e-01	ci right 8.293569e-01	k: 33026	n:40000
KIAA1244   40000 perm   11 sec   (3492 perm/sec)   p_kst 8.256500e-01   p_cons 2.377500e-02   p_joint 8.185000e-02

Joint ci ratio: 4.752724e-02	ci left: 1.169064e-01	ci right 1.226178e-01	k: 5987	n:50000
Cons ci ratio: 1.134511e-01	ci left: 2.199546e-02	ci right 2.466028e-02	k: 1165	n:50000
KS ci ratio: 8.031110e-03	ci left: 8.231922e-01	ci right 8.298499e-01	k: 41327	n:50000
KIAA1244   50000 perm   15 sec   (3426 perm/sec)   p_kst 8.265400e-01   p_cons 2.330000e-02   p_joint 1.197400e-01

Joint ci ratio: 4.057250e-02	ci left: 1.318950e-01	ci right 1.373737e-01	k: 8077	n:60000
Cons ci ratio: 1.034605e-01	ci left: 2.215643e-02	ci right 2.458997e-02	k: 1401	n:60000
KS ci ratio: 6.671840e-03	ci left: 8.490661e-01	ci right 8.547665e-01	k: 51116	n:60000
KIAA1244   60000 perm   18 sec   (3367 perm/sec)   p_kst 8.519333e-01   p_cons 2.335000e-02   p_joint 1.346167e-01

Joint ci ratio: 3.952049e-02	ci left: 1.207879e-01	ci right 1.256719e-01	k: 8625	n:70000
Cons ci ratio: 9.601654e-02	ci left: 2.213932e-02	ci right 2.438615e-02	k: 1627	n:70000
KS ci ratio: 6.176322e-03	ci left: 8.493045e-01	ci right 8.545805e-01	k: 59637	n:70000
KIAA1244   70000 perm   21 sec   (3315 perm/sec)   p_kst 8.519571e-01   p_cons 2.324286e-02   p_joint 1.232143e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1244.8_6670_70000_0.85196_0.023243_0.12321.png
                gene_name: KIAA1244
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 28 percent done.
KIAA0232
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KIAA0232   10000 perm   2 sec   (4500 perm/sec)   p_kst 7.536000e-01   p_cons 6.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0232.7_4220_10000_0.7536_0.6597_1.png
                gene_name: KIAA0232
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
KIAA0754
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
Cons ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
KS ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
KIAA0754   10000 perm   2 sec   (4862 perm/sec)   p_kst 6.571000e-01   p_cons 9.180000e-02   p_joint 2.666000e-01

Joint ci ratio: 5.526384e-02	ci left: 1.954153e-01	ci right 2.065718e-01	k: 4019	n:20000
Cons ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
KS ci ratio: 2.043745e-02	ci left: 6.411340e-01	ci right 6.544230e-01	k: 12956	n:20000
KIAA0754   20000 perm   5 sec   (4406 perm/sec)   p_kst 6.478000e-01   p_cons 7.985000e-02   p_joint 2.009500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0754.7_4288_20000_0.6478_0.07985_0.20095.png
                gene_name: KIAA0754
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 30 percent done.
KIAA0922
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
Cons ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
KS ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
KIAA0922   10000 perm   2 sec   (4738 perm/sec)   p_kst 4.026000e-01   p_cons 8.810000e-02   p_joint 2.161000e-01

Joint ci ratio: 5.216141e-02	ci left: 2.144235e-01	ci right 2.259579e-01	k: 4403	n:20000
Cons ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
KS ci ratio: 3.396263e-02	ci left: 3.929512e-01	ci right 4.065780e-01	k: 7995	n:20000
KIAA0922   20000 perm   5 sec   (4340 perm/sec)   p_kst 3.997500e-01   p_cons 8.925000e-02   p_joint 2.201500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0922.7_4973_20000_0.39975_0.08925_0.22015.png
                gene_name: KIAA0922
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 32 percent done.
KIAA1024
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 4.300808e-03	ci left: 9.858854e-01	ci right 9.902234e-01	k: 9882	n:10000
KS ci ratio: 3.123541e-02	ci left: 6.019660e-01	ci right 6.211689e-01	k: 6116	n:10000
KIAA1024   10000 perm   2 sec   (5652 perm/sec)   p_kst 6.116000e-01   p_cons 9.882000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1024.7_2763_10000_0.6116_0.9882_0.9245.png
                gene_name: KIAA1024
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 33 percent done.
KIAA1377
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
Cons ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
KS ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
KIAA1377   10000 perm   2 sec   (5148 perm/sec)   p_kst 1.147000e-01   p_cons 6.262000e-01   p_joint 2.056000e-01

Joint ci ratio: 5.458489e-02	ci left: 1.993738e-01	ci right 2.106121e-01	k: 4099	n:20000
Cons ci ratio: 2.236782e-02	ci left: 5.987868e-01	ci right 6.123825e-01	k: 12112	n:20000
KS ci ratio: 7.729207e-02	ci left: 1.095285e-01	ci right 1.183841e-01	k: 2278	n:20000
KIAA1377   20000 perm   4 sec   (4640 perm/sec)   p_kst 1.139000e-01   p_cons 6.056000e-01   p_joint 2.049500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1377.7_3398_20000_0.1139_0.6056_0.20495.png
                gene_name: KIAA1377
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 34 percent done.
KIAA1524
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
Cons ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
KIAA1524   10000 perm   2 sec   (5154 perm/sec)   p_kst 6.592000e-01   p_cons 1.373000e-01   p_joint 4.928000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1524.7_2802_10000_0.6592_0.1373_0.4928.png
                gene_name: KIAA1524
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 35 percent done.
KIAA0196
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
KIAA0196   10000 perm   2 sec   (4730 perm/sec)   p_kst 5.822000e-01   p_cons 1.115000e-01   p_joint 3.859000e-01

Joint ci ratio: 4.315085e-02	ci left: 2.857538e-01	ci right 2.984067e-01	k: 5841	n:20000
Cons ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
KS ci ratio: 2.364182e-02	ci left: 5.719711e-01	ci right 5.857059e-01	k: 11577	n:20000
KIAA0196   20000 perm   5 sec   (4318 perm/sec)   p_kst 5.788500e-01   p_cons 1.101500e-01   p_joint 2.920500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0196.6_3592_20000_0.57885_0.11015_0.29205.png
                gene_name: KIAA0196
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 37 percent done.
KIAA0319
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
KIAA0319   10000 perm   2 sec   (4973 perm/sec)   p_kst 3.717000e-01   p_cons 9.200000e-02   p_joint 1.820000e-01

Joint ci ratio: 5.238263e-02	ci left: 2.129874e-01	ci right 2.244945e-01	k: 4374	n:20000
Cons ci ratio: 8.354924e-02	ci left: 9.499246e-02	ci right 1.033245e-01	k: 1982	n:20000
KS ci ratio: 3.596863e-02	ci left: 3.658433e-01	ci right 3.792938e-01	k: 7451	n:20000
KIAA0319   20000 perm   4 sec   (4498 perm/sec)   p_kst 3.725500e-01   p_cons 9.910000e-02   p_joint 2.187000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0319.6_3331_20000_0.37255_0.0991_0.2187.png
                gene_name: KIAA0319
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 38 percent done.
KIAA0355
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
Cons ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
KS ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
KIAA0355   10000 perm   2 sec   (5038 perm/sec)   p_kst 8.997000e-01   p_cons 3.800000e-02   p_joint 1.663000e-01

Joint ci ratio: 5.281551e-02	ci left: 2.102144e-01	ci right 2.216683e-01	k: 4318	n:20000
Cons ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
KS ci ratio: 9.163722e-03	ci left: 8.972866e-01	ci right 9.055963e-01	k: 18030	n:20000
KIAA0355   20000 perm   4 sec   (4572 perm/sec)   p_kst 9.015000e-01   p_cons 4.070000e-02   p_joint 2.159000e-01

Joint ci ratio: 4.612560e-02	ci left: 1.895385e-01	ci right 1.985208e-01	k: 5820	n:30000
Cons ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
KS ci ratio: 7.714063e-03	ci left: 8.924230e-01	ci right 8.993668e-01	k: 26878	n:30000
KIAA0355   30000 perm   7 sec   (4388 perm/sec)   p_kst 8.959333e-01   p_cons 4.053333e-02   p_joint 1.940000e-01

Joint ci ratio: 3.707286e-02	ci left: 2.143840e-01	ci right 2.225069e-01	k: 8737	n:40000
Cons ci ratio: 9.791489e-02	ci left: 3.663558e-02	ci right 4.043179e-02	k: 1540	n:40000
KS ci ratio: 6.641254e-03	ci left: 8.940052e-01	ci right 8.999870e-01	k: 35881	n:40000
KIAA0355   40000 perm   9 sec   (4252 perm/sec)   p_kst 8.970250e-01   p_cons 3.850000e-02   p_joint 2.184250e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0355.6_3265_40000_0.89702_0.0385_0.21843.png
                gene_name: KIAA0355
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
KIAA0649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
Cons ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
KS ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KIAA0649   10000 perm   2 sec   (5314 perm/sec)   p_kst 1.140000e-01   p_cons 3.530000e-02   p_joint 7.010000e-02

Joint ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
Cons ci ratio: 1.364125e-01	ci left: 3.693936e-02	ci right 4.239551e-02	k: 792	n:20000
KS ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
KIAA0649   20000 perm   4 sec   (4770 perm/sec)   p_kst 1.167000e-01   p_cons 3.960000e-02   p_joint 6.140000e-02

Joint ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
Cons ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
KS ci ratio: 6.211371e-02	ci left: 1.135478e-01	ci right 1.208598e-01	k: 3515	n:30000
KIAA0649   30000 perm   7 sec   (4555 perm/sec)   p_kst 1.171667e-01   p_cons 4.053333e-02   p_joint 4.016667e-02

Joint ci ratio: 7.526939e-02	ci left: 6.110491e-02	ci right 6.590870e-02	k: 2539	n:40000
Cons ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
KS ci ratio: 5.432524e-02	ci left: 1.120374e-01	ci right 1.183186e-01	k: 4606	n:40000
KIAA0649   40000 perm   9 sec   (4436 perm/sec)   p_kst 1.151500e-01   p_cons 4.130000e-02   p_joint 6.347500e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0649.6_3634_40000_0.11515_0.0413_0.063475.png
                gene_name: KIAA0649
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 41 percent done.
KIAA1009
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
KIAA1009   10000 perm   2 sec   (4876 perm/sec)   p_kst 9.034000e-01   p_cons 6.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1009.6_4316_10000_0.9034_0.6952_1.png
                gene_name: KIAA1009
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
KIAA1324
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912193e-02	ci left: 7.999380e-01	ci right 8.154824e-01	k: 8078	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
KIAA1324   10000 perm   2 sec   (4821 perm/sec)   p_kst 8.948000e-01   p_cons 3.854000e-01   p_joint 8.078000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1324.6_3130_10000_0.8948_0.3854_0.8078.png
                gene_name: KIAA1324
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 43 percent done.
KIAA1324L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KIAA1324L   10000 perm   2 sec   (4941 perm/sec)   p_kst 9.200000e-02   p_cons 7.254000e-01   p_joint 2.401000e-01

Joint ci ratio: 5.487967e-02	ci left: 1.976418e-01	ci right 2.088446e-01	k: 4064	n:20000
Cons ci ratio: 1.792337e-02	ci left: 6.987761e-01	ci right 7.114642e-01	k: 14103	n:20000
KS ci ratio: 8.622963e-02	ci left: 8.959754e-02	ci right 9.772104e-02	k: 1872	n:20000
KIAA1324L   20000 perm   4 sec   (4490 perm/sec)   p_kst 9.360000e-02   p_cons 7.051500e-01   p_joint 2.032000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1324L.6_3178_20000_0.0936_0.70515_0.2032.png
                gene_name: KIAA1324L
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 44 percent done.
KIAA0240
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
KS ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
KIAA0240   10000 perm   2 sec   (4988 perm/sec)   p_kst 3.420000e-02   p_cons 3.616000e-01   p_joint 1.140000e-01

Joint ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
Cons ci ratio: 3.722033e-02	ci left: 3.500574e-01	ci right 3.633843e-01	k: 7134	n:20000
KS ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
KIAA0240   20000 perm   4 sec   (4489 perm/sec)   p_kst 3.480000e-02   p_cons 3.567000e-01   p_joint 5.580000e-02

Joint ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
Cons ci ratio: 3.042006e-02	ci left: 3.508450e-01	ci right 3.617162e-01	k: 10688	n:30000
KS ci ratio: 1.208175e-01	ci left: 3.184836e-02	ci right 3.597588e-02	k: 1016	n:30000
KIAA0240   30000 perm   7 sec   (4345 perm/sec)   p_kst 3.386667e-02   p_cons 3.562667e-01   p_joint 4.083333e-02

Joint ci ratio: 8.478836e-02	ci left: 4.857025e-02	ci right 5.289527e-02	k: 2028	n:40000
Cons ci ratio: 2.632158e-02	ci left: 3.519788e-01	ci right 3.613921e-01	k: 14267	n:40000
KS ci ratio: 1.007719e-01	ci left: 3.461027e-02	ci right 3.830742e-02	k: 1457	n:40000
KIAA0240   40000 perm   9 sec   (4235 perm/sec)   p_kst 3.642500e-02   p_cons 3.566750e-01   p_joint 5.070000e-02

Joint ci ratio: 8.198787e-02	ci left: 4.192469e-02	ci right 4.552853e-02	k: 2185	n:50000
Cons ci ratio: 2.348334e-02	ci left: 3.536366e-01	ci right 3.620599e-01	k: 17892	n:50000
KS ci ratio: 9.413290e-02	ci left: 3.193993e-02	ci right 3.511453e-02	k: 1675	n:50000
KIAA0240   50000 perm   12 sec   (4164 perm/sec)   p_kst 3.350000e-02   p_cons 3.578400e-01   p_joint 4.370000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0240.5_3284_50000_0.0335_0.35784_0.0437.png
                gene_name: KIAA0240
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 46 percent done.
KIAA0317
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
Cons ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
KIAA0317   10000 perm   2 sec   (5217 perm/sec)   p_kst 2.033000e-01   p_cons 2.692000e-01   p_joint 2.225000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0317.5_2544_10000_0.2033_0.2692_0.2225.png
                gene_name: KIAA0317
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 47 percent done.
KIAA0319L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
Cons ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
KS ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
KIAA0319L   10000 perm   2 sec   (5378 perm/sec)   p_kst 3.001000e-01   p_cons 2.035000e-01   p_joint 3.346000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0319L.5_3230_10000_0.3001_0.2035_0.3346.png
                gene_name: KIAA0319L
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
KIAA0528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
KIAA0528   10000 perm   2 sec   (5030 perm/sec)   p_kst 2.178000e-01   p_cons 5.840000e-02   p_joint 7.700000e-02

Joint ci ratio: 7.513209e-02	ci left: 1.152809e-01	ci right 1.243300e-01	k: 2395	n:20000
Cons ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
KS ci ratio: 5.258266e-02	ci left: 2.116999e-01	ci right 2.231824e-01	k: 4348	n:20000
KIAA0528   20000 perm   4 sec   (4521 perm/sec)   p_kst 2.174000e-01   p_cons 5.290000e-02   p_joint 1.197500e-01

Joint ci ratio: 6.113308e-02	ci left: 1.168364e-01	ci right 1.242373e-01	k: 3615	n:30000
Cons ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
KS ci ratio: 4.307085e-02	ci left: 2.116851e-01	ci right 2.210366e-01	k: 6490	n:30000
KIAA0528   30000 perm   7 sec   (4342 perm/sec)   p_kst 2.163333e-01   p_cons 5.336667e-02   p_joint 1.205000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0528.5_3099_30000_0.21633_0.053367_0.1205.png
                gene_name: KIAA0528
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
KIAA1012
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
Cons ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
KIAA1012   10000 perm   2 sec   (4527 perm/sec)   p_kst 4.710000e-02   p_cons 1.480000e-01   p_joint 8.260000e-02

Joint ci ratio: 1.108454e-01	ci left: 5.557898e-02	ci right 6.215000e-02	k: 1176	n:20000
Cons ci ratio: 6.861331e-02	ci left: 1.354650e-01	ci right 1.451398e-01	k: 2805	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
KIAA1012   20000 perm   5 sec   (4237 perm/sec)   p_kst 4.865000e-02   p_cons 1.402500e-01   p_joint 5.880000e-02

Joint ci ratio: 9.312609e-02	ci left: 5.316386e-02	ci right 5.838925e-02	k: 1672	n:30000
Cons ci ratio: 5.613148e-02	ci left: 1.358942e-01	ci right 1.437756e-01	k: 4194	n:30000
KS ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
KIAA1012   30000 perm   7 sec   (4105 perm/sec)   p_kst 4.733333e-02   p_cons 1.398000e-01   p_joint 5.573333e-02

Joint ci ratio: 8.738255e-02	ci left: 4.580311e-02	ci right 5.001284e-02	k: 1915	n:40000
Cons ci ratio: 4.862322e-02	ci left: 1.363659e-01	ci right 1.431865e-01	k: 5590	n:40000
KS ci ratio: 8.762298e-02	ci left: 4.555832e-02	ci right 4.975766e-02	k: 1905	n:40000
KIAA1012   40000 perm   10 sec   (4011 perm/sec)   p_kst 4.762500e-02   p_cons 1.397500e-01   p_joint 4.787500e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1012.5_4424_40000_0.047625_0.13975_0.047875.png
                gene_name: KIAA1012
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 51 percent done.
KHNYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
Cons ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
KS ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KHNYN   10000 perm   2 sec   (5643 perm/sec)   p_kst 1.720000e-02   p_cons 7.118000e-01   p_joint 4.930000e-02

Joint ci ratio: 1.188317e-01	ci left: 4.852591e-02	ci right 5.470528e-02	k: 1031	n:20000
Cons ci ratio: 1.739028e-02	ci left: 7.112545e-01	ci right 7.237822e-01	k: 14351	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KHNYN   20000 perm   4 sec   (4993 perm/sec)   p_kst 1.680000e-02   p_cons 7.175500e-01   p_joint 5.155000e-02

Joint ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
Cons ci ratio: 1.431427e-02	ci left: 7.091173e-01	ci right 7.193745e-01	k: 21428	n:30000
KS ci ratio: 1.733099e-01	ci left: 1.531212e-02	ci right 1.824920e-02	k: 502	n:30000
KHNYN   30000 perm   6 sec   (4763 perm/sec)   p_kst 1.673333e-02   p_cons 7.142667e-01   p_joint 3.806667e-02

Joint ci ratio: 9.193471e-02	ci left: 4.147284e-02	ci right 4.549378e-02	k: 1738	n:40000
Cons ci ratio: 1.244568e-02	ci left: 7.081875e-01	ci right 7.170816e-01	k: 28506	n:40000
KS ci ratio: 1.482657e-01	ci left: 1.590033e-02	ci right 1.847045e-02	k: 686	n:40000
KHNYN   40000 perm   9 sec   (4638 perm/sec)   p_kst 1.715000e-02   p_cons 7.126500e-01   p_joint 4.345000e-02

Joint ci ratio: 8.278304e-02	ci left: 4.114047e-02	ci right 4.471284e-02	k: 2145	n:50000
Cons ci ratio: 1.112553e-02	ci left: 7.088922e-01	ci right 7.168431e-01	k: 35644	n:50000
KS ci ratio: 1.319696e-01	ci left: 1.619457e-02	ci right 1.850196e-02	k: 866	n:50000
KHNYN   50000 perm   11 sec   (4524 perm/sec)   p_kst 1.732000e-02   p_cons 7.128800e-01   p_joint 4.290000e-02

Joint ci ratio: 8.126372e-02	ci left: 3.581417e-02	ci right 3.886413e-02	k: 2239	n:60000
Cons ci ratio: 1.012799e-02	ci left: 7.103823e-01	ci right 7.176303e-01	k: 42841	n:60000
KS ci ratio: 1.203185e-01	ci left: 1.633646e-02	ci right 1.844392e-02	k: 1042	n:60000
KHNYN   60000 perm   14 sec   (4418 perm/sec)   p_kst 1.736667e-02   p_cons 7.140167e-01   p_joint 3.731667e-02

Joint ci ratio: 8.331189e-02	ci left: 2.937845e-02	ci right 3.194636e-02	k: 2145	n:70000
Cons ci ratio: 9.369876e-03	ci left: 7.109518e-01	ci right 7.176590e-01	k: 50002	n:70000
KS ci ratio: 1.115724e-01	ci left: 1.636090e-02	ci right 1.830798e-02	k: 1212	n:70000
KHNYN   70000 perm   16 sec   (4325 perm/sec)   p_kst 1.731429e-02   p_cons 7.143143e-01   p_joint 3.064286e-02

Joint ci ratio: 7.197727e-02	ci left: 3.446175e-02	ci right 3.704706e-02	k: 2859	n:80000
Cons ci ratio: 8.776842e-03	ci left: 7.106038e-01	ci right 7.168807e-01	k: 57100	n:80000
KS ci ratio: 1.044926e-01	ci left: 1.638341e-02	ci right 1.820184e-02	k: 1382	n:80000
KHNYN   80000 perm   19 sec   (4239 perm/sec)   p_kst 1.727500e-02   p_cons 7.137500e-01   p_joint 3.573750e-02

Joint ci ratio: 7.042652e-02	ci left: 3.210456e-02	ci right 3.445898e-02	k: 2994	n:90000
Cons ci ratio: 8.277254e-03	ci left: 7.106675e-01	ci right 7.165854e-01	k: 64227	n:90000
KS ci ratio: 9.899931e-02	ci left: 1.627388e-02	ci right 1.797967e-02	k: 1540	n:90000
KHNYN   90000 perm   22 sec   (4164 perm/sec)   p_kst 1.711111e-02   p_cons 7.136333e-01   p_joint 3.326667e-02

Outputting figure to mutsig2_images.part000000000090/KHNYN.4_2065_90000_0.017111_0.71363_0.033267.png
                gene_name: KHNYN
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 52 percent done.
KIAA0020
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
Cons ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KIAA0020   10000 perm   2 sec   (5192 perm/sec)   p_kst 1.627000e-01   p_cons 7.735000e-01   p_joint 3.140000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0020.4_2015_10000_0.1627_0.7735_0.314.png
                gene_name: KIAA0020
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 53 percent done.
KIAA0090
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
Cons ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
KS ci ratio: 4.677321e-02	ci left: 4.028281e-01	ci right 4.222229e-01	k: 4125	n:10000
KIAA0090   10000 perm   2 sec   (5003 perm/sec)   p_kst 4.125000e-01   p_cons 8.683000e-01   p_joint 8.110000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0090.4_3074_10000_0.4125_0.8683_0.811.png
                gene_name: KIAA0090
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 54 percent done.
KIAA0174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
Cons ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
KS ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
KIAA0174   10000 perm   2 sec   (5995 perm/sec)   p_kst 7.777000e-01   p_cons 6.661000e-01   p_joint 9.238000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0174.4_1119_10000_0.7777_0.6661_0.9238.png
                gene_name: KIAA0174
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 56 percent done.
KIAA0391
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
KIAA0391   10000 perm   2 sec   (5718 perm/sec)   p_kst 2.961000e-01   p_cons 6.000000e-04   p_joint 1.320000e-02

Joint ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
Cons ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
KS ci ratio: 4.332889e-02	ci left: 2.840649e-01	ci right 2.966961e-01	k: 5807	n:20000
KIAA0391   20000 perm   4 sec   (5170 perm/sec)   p_kst 2.903500e-01   p_cons 6.000000e-04   p_joint 6.250000e-03

Joint ci ratio: 3.317134e-01	ci left: 3.865922e-03	ci right 5.432388e-03	k: 138	n:30000
Cons ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
KS ci ratio: 3.560533e-02	ci left: 2.826147e-01	ci right 2.928931e-01	k: 8632	n:30000
KIAA0391   30000 perm   6 sec   (4933 perm/sec)   p_kst 2.877333e-01   p_cons 6.000000e-04   p_joint 4.600000e-03

Joint ci ratio: 3.194620e-01	ci left: 3.151775e-03	ci right 4.372012e-03	k: 149	n:40000
Cons ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
KS ci ratio: 3.085898e-02	ci left: 2.829930e-01	ci right 2.918878e-01	k: 11497	n:40000
KIAA0391   40000 perm   8 sec   (4783 perm/sec)   p_kst 2.874250e-01   p_cons 7.000000e-04   p_joint 3.725000e-03

Joint ci ratio: 3.273345e-01	ci left: 2.392621e-03	ci right 3.346552e-03	k: 142	n:50000
Cons ci ratio: 6.441991e-01	ci left: 5.043285e-04	ci right 9.966455e-04	k: 36	n:50000
KS ci ratio: 2.758833e-02	ci left: 2.836548e-01	ci right 2.916099e-01	k: 14381	n:50000
KIAA0391   50000 perm   11 sec   (4660 perm/sec)   p_kst 2.876200e-01   p_cons 7.200000e-04   p_joint 2.840000e-03

Joint ci ratio: 3.085220e-01	ci left: 2.269907e-03	ci right 3.112677e-03	k: 160	n:60000
Cons ci ratio: 6.195946e-01	ci left: 4.622531e-04	ci right 8.884654e-04	k: 39	n:60000
KS ci ratio: 2.522911e-02	ci left: 2.832828e-01	ci right 2.905378e-01	k: 17214	n:60000
KIAA0391   60000 perm   13 sec   (4563 perm/sec)   p_kst 2.869000e-01   p_cons 6.500000e-04   p_joint 2.666667e-03

Joint ci ratio: 3.370520e-01	ci left: 1.604141e-03	ci right 2.266808e-03	k: 134	n:70000
Cons ci ratio: 5.598000e-01	ci left: 5.056335e-04	ci right 9.090561e-04	k: 48	n:70000
KS ci ratio: 2.342317e-02	ci left: 2.824122e-01	ci right 2.891198e-01	k: 20003	n:70000
KIAA0391   70000 perm   16 sec   (4485 perm/sec)   p_kst 2.857571e-01   p_cons 6.857143e-04   p_joint 1.914286e-03

Joint ci ratio: 3.605968e-01	ci left: 1.209673e-03	ci right 1.752513e-03	k: 117	n:80000
Cons ci ratio: 5.283877e-01	ci left: 5.071202e-04	ci right 8.806380e-04	k: 54	n:80000
KS ci ratio: 2.190280e-02	ci left: 2.827705e-01	ci right 2.890450e-01	k: 22872	n:80000
KIAA0391   80000 perm   18 sec   (4410 perm/sec)   p_kst 2.859000e-01   p_cons 6.750000e-04   p_joint 1.462500e-03

Joint ci ratio: 1.801498e-01	ci left: 4.761784e-03	ci right 5.714978e-03	k: 470	n:90000
Cons ci ratio: 4.650323e-01	ci left: 6.063646e-04	ci right 9.825747e-04	k: 70	n:90000
KS ci ratio: 2.067273e-02	ci left: 2.825063e-01	ci right 2.884186e-01	k: 25691	n:90000
KIAA0391   90000 perm   21 sec   (4338 perm/sec)   p_kst 2.854556e-01   p_cons 7.777778e-04   p_joint 5.222222e-03

Joint ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
Cons ci ratio: 4.327119e-01	ci left: 6.433073e-04	ci right 1.006657e-03	k: 81	n:100000
KS ci ratio: 1.958723e-02	ci left: 2.831705e-01	ci right 2.887819e-01	k: 28597	n:100000
KIAA0391   100000 perm   23 sec   (4267 perm/sec)   p_kst 2.859700e-01   p_cons 8.100000e-04   p_joint 6.350000e-03

Joint ci ratio: 1.489798e-01	ci left: 5.788408e-03	ci right 6.728819e-03	k: 687	n:110000
Cons ci ratio: 4.041425e-01	ci left: 6.824435e-04	ci right 1.035640e-03	k: 93	n:110000
KS ci ratio: 1.864241e-02	ci left: 2.840287e-01	ci right 2.893825e-01	k: 31537	n:110000
KIAA0391   110000 perm   26 sec   (4205 perm/sec)   p_kst 2.867000e-01   p_cons 8.454545e-04   p_joint 6.245455e-03

Joint ci ratio: 1.455486e-01	ci left: 5.570861e-03	ci right 6.453268e-03	k: 720	n:120000
Cons ci ratio: 3.879712e-01	ci left: 6.856020e-04	ci right 1.022609e-03	k: 101	n:120000
KS ci ratio: 1.785460e-02	ci left: 2.840094e-01	ci right 2.891342e-01	k: 34388	n:120000
KIAA0391   120000 perm   29 sec   (4143 perm/sec)   p_kst 2.865667e-01   p_cons 8.416667e-04   p_joint 6.000000e-03

Joint ci ratio: 1.444783e-01	ci left: 5.223810e-03	ci right 6.044632e-03	k: 731	n:130000
Cons ci ratio: 3.735977e-01	ci left: 6.885132e-04	ci right 1.011347e-03	k: 109	n:130000
KS ci ratio: 1.714407e-02	ci left: 2.843501e-01	ci right 2.892748e-01	k: 37285	n:130000
KIAA0391   130000 perm   32 sec   (4080 perm/sec)   p_kst 2.868077e-01   p_cons 8.384615e-04   p_joint 5.623077e-03

Joint ci ratio: 1.429455e-01	ci left: 4.960808e-03	ci right 5.731326e-03	k: 747	n:140000
Cons ci ratio: 3.547442e-01	ci left: 7.172116e-04	ci right 1.032624e-03	k: 121	n:140000
KS ci ratio: 1.650981e-02	ci left: 2.847025e-01	ci right 2.894491e-01	k: 40190	n:140000
KIAA0391   140000 perm   35 sec   (4018 perm/sec)   p_kst 2.870714e-01   p_cons 8.642857e-04   p_joint 5.335714e-03

Joint ci ratio: 1.458401e-01	ci left: 4.443651e-03	ci right 5.149033e-03	k: 718	n:150000
Cons ci ratio: 3.410409e-01	ci left: 7.302420e-04	ci right 1.036249e-03	k: 131	n:150000
KS ci ratio: 1.593437e-02	ci left: 2.851838e-01	ci right 2.897711e-01	k: 43121	n:150000
KIAA0391   150000 perm   38 sec   (3958 perm/sec)   p_kst 2.874733e-01   p_cons 8.733333e-04   p_joint 4.786667e-03

Joint ci ratio: 1.463742e-01	ci left: 4.135767e-03	ci right 4.794888e-03	k: 713	n:160000
Cons ci ratio: 3.323446e-01	ci left: 7.246534e-04	ci right 1.018919e-03	k: 138	n:160000
KS ci ratio: 1.543470e-02	ci left: 2.850898e-01	ci right 2.895305e-01	k: 45969	n:160000
KIAA0391   160000 perm   41 sec   (3901 perm/sec)   p_kst 2.873062e-01   p_cons 8.625000e-04   p_joint 4.456250e-03

Joint ci ratio: 1.461880e-01	ci left: 3.903786e-03	ci right 4.525074e-03	k: 715	n:170000
Cons ci ratio: 3.231754e-01	ci left: 7.252144e-04	ci right 1.009899e-03	k: 146	n:170000
KS ci ratio: 1.497603e-02	ci left: 2.850969e-01	ci right 2.894045e-01	k: 48832	n:170000
KIAA0391   170000 perm   44 sec   (3845 perm/sec)   p_kst 2.872471e-01   p_cons 8.588235e-04   p_joint 4.205882e-03

Joint ci ratio: 1.446913e-01	ci left: 3.767190e-03	ci right 4.360069e-03	k: 730	n:180000
Cons ci ratio: 3.167776e-01	ci left: 7.155807e-04	ci right 9.897960e-04	k: 152	n:180000
KS ci ratio: 1.454847e-02	ci left: 2.853156e-01	ci right 2.895024e-01	k: 51733	n:180000
KIAA0391   180000 perm   47 sec   (3792 perm/sec)   p_kst 2.874056e-01   p_cons 8.444444e-04   p_joint 4.055556e-03

Joint ci ratio: 1.427595e-01	ci left: 3.670382e-03	ci right 4.239654e-03	k: 750	n:190000
Cons ci ratio: 3.117279e-01	ci left: 7.021583e-04	ci right 9.660873e-04	k: 157	n:190000
KS ci ratio: 1.417485e-02	ci left: 2.849561e-01	ci right 2.890294e-01	k: 54528	n:190000
KIAA0391   190000 perm   51 sec   (3739 perm/sec)   p_kst 2.869895e-01   p_cons 8.263158e-04   p_joint 3.947368e-03

Joint ci ratio: 1.654177e-01	ci left: 2.568358e-03	ci right 3.036238e-03	k: 559	n:200000
Cons ci ratio: 3.059743e-01	ci left: 6.947253e-04	ci right 9.501013e-04	k: 163	n:200000
KS ci ratio: 1.380867e-02	ci left: 2.852226e-01	ci right 2.891935e-01	k: 57441	n:200000
KIAA0391   200000 perm   54 sec   (3687 perm/sec)   p_kst 2.872050e-01   p_cons 8.150000e-04   p_joint 2.795000e-03

Joint ci ratio: 1.642566e-01	ci left: 2.482570e-03	ci right 2.931332e-03	k: 567	n:210000
Cons ci ratio: 2.970506e-01	ci left: 7.056615e-04	ci right 9.560674e-04	k: 173	n:210000
KS ci ratio: 1.347543e-02	ci left: 2.852844e-01	ci right 2.891595e-01	k: 60316	n:210000
KIAA0391   210000 perm   58 sec   (3636 perm/sec)   p_kst 2.872190e-01   p_cons 8.238095e-04   p_joint 2.700000e-03

Joint ci ratio: 1.604865e-01	ci left: 2.487467e-03	ci right 2.925799e-03	k: 594	n:220000
Cons ci ratio: 2.912508e-01	ci left: 7.030566e-04	ci right 9.467692e-04	k: 180	n:220000
KS ci ratio: 1.315936e-02	ci left: 2.855231e-01	ci right 2.893098e-01	k: 63231	n:220000
KIAA0391   220000 perm   61 sec   (3586 perm/sec)   p_kst 2.874136e-01   p_cons 8.181818e-04   p_joint 2.700000e-03

Joint ci ratio: 1.604960e-01	ci left: 2.379305e-03	ci right 2.798604e-03	k: 594	n:230000
Cons ci ratio: 2.865416e-01	ci left: 6.966855e-04	ci right 9.335779e-04	k: 186	n:230000
KS ci ratio: 1.287587e-02	ci left: 2.853818e-01	ci right 2.890844e-01	k: 66063	n:230000
KIAA0391   230000 perm   65 sec   (3538 perm/sec)   p_kst 2.872304e-01   p_cons 8.086957e-04   p_joint 2.582609e-03

Joint ci ratio: 1.613221e-01	ci left: 2.256162e-03	ci right 2.656005e-03	k: 588	n:240000
Cons ci ratio: 2.820537e-01	ci left: 6.908743e-04	ci right 9.214570e-04	k: 192	n:240000
KS ci ratio: 1.261509e-02	ci left: 2.850867e-01	ci right 2.887101e-01	k: 68855	n:240000
KIAA0391   240000 perm   69 sec   (3493 perm/sec)   p_kst 2.868958e-01   p_cons 8.000000e-04   p_joint 2.450000e-03

Joint ci ratio: 1.577463e-01	ci left: 2.269606e-03	ci right 2.662071e-03	k: 615	n:250000
Cons ci ratio: 2.736719e-01	ci left: 7.078967e-04	ci right 9.359328e-04	k: 204	n:250000
KS ci ratio: 1.236892e-02	ci left: 2.848360e-01	ci right 2.883850e-01	k: 71652	n:250000
KIAA0391   250000 perm   73 sec   (3447 perm/sec)   p_kst 2.866080e-01   p_cons 8.160000e-04   p_joint 2.460000e-03

Joint ci ratio: 1.576256e-01	ci left: 2.186000e-03	ci right 2.563691e-03	k: 616	n:260000
Cons ci ratio: 2.703959e-01	ci left: 6.985887e-04	ci right 9.204753e-04	k: 209	n:260000
KS ci ratio: 1.213136e-02	ci left: 2.847818e-01	ci right 2.882614e-01	k: 74495	n:260000
KIAA0391   260000 perm   76 sec   (3403 perm/sec)   p_kst 2.865192e-01   p_cons 8.038462e-04   p_joint 2.369231e-03

Joint ci ratio: 1.422747e-01	ci left: 2.604188e-03	ci right 3.006602e-03	k: 756	n:270000
Cons ci ratio: 2.647811e-01	ci left: 7.038128e-04	ci right 9.219474e-04	k: 218	n:270000
KS ci ratio: 1.189879e-02	ci left: 2.850132e-01	ci right 2.884284e-01	k: 77414	n:270000
KIAA0391   270000 perm   80 sec   (3359 perm/sec)   p_kst 2.867185e-01   p_cons 8.074074e-04   p_joint 2.800000e-03

Joint ci ratio: 1.550171e-01	ci left: 2.101916e-03	ci right 2.458511e-03	k: 637	n:280000
Cons ci ratio: 2.595022e-01	ci left: 7.087078e-04	ci right 9.232704e-04	k: 227	n:280000
KS ci ratio: 1.141851e-02	ci left: 2.945341e-01	ci right 2.979201e-01	k: 82943	n:280000
KIAA0391   280000 perm   84 sec   (3316 perm/sec)   p_kst 2.962250e-01   p_cons 8.107143e-04   p_joint 2.275000e-03

Joint ci ratio: 1.531109e-01	ci left: 2.082480e-03	ci right 2.431034e-03	k: 653	n:290000
Cons ci ratio: 2.567041e-01	ci left: 7.003953e-04	ci right 9.097885e-04	k: 232	n:290000
KS ci ratio: 1.122031e-02	ci left: 2.945489e-01	ci right 2.978759e-01	k: 85901	n:290000
KIAA0391   290000 perm   89 sec   (3276 perm/sec)   p_kst 2.962103e-01   p_cons 8.000000e-04   p_joint 2.251724e-03

Joint ci ratio: 1.496042e-01	ci left: 2.112487e-03	ci right 2.457241e-03	k: 684	n:300000
Cons ci ratio: 2.508498e-01	ci left: 7.113842e-04	ci right 9.184551e-04	k: 243	n:300000
KS ci ratio: 1.103543e-02	ci left: 2.944367e-01	ci right 2.977072e-01	k: 88821	n:300000
KIAA0391   300000 perm   93 sec   (3237 perm/sec)   p_kst 2.960700e-01   p_cons 8.100000e-04   p_joint 2.280000e-03

Joint ci ratio: 1.342702e-01	ci left: 2.557790e-03	ci right 2.929022e-03	k: 849	n:310000
Cons ci ratio: 2.439466e-01	ci left: 7.307992e-04	ci right 9.367813e-04	k: 257	n:310000
KS ci ratio: 1.085151e-02	ci left: 2.946349e-01	ci right 2.978528e-01	k: 91835	n:310000
KIAA0391   310000 perm   97 sec   (3198 perm/sec)   p_kst 2.962419e-01   p_cons 8.290323e-04   p_joint 2.738710e-03

Joint ci ratio: 1.325668e-01	ci left: 2.544313e-03	ci right 2.908535e-03	k: 871	n:320000
Cons ci ratio: 2.371476e-01	ci left: 7.520131e-04	ci right 9.572000e-04	k: 272	n:320000
KS ci ratio: 1.068257e-02	ci left: 2.945840e-01	ci right 2.977509e-01	k: 94773	n:320000
KIAA0391   320000 perm   101 sec   (3160 perm/sec)   p_kst 2.961656e-01   p_cons 8.500000e-04   p_joint 2.721875e-03

Joint ci ratio: 1.307068e-01	ci left: 2.540475e-03	ci right 2.898649e-03	k: 896	n:330000
Cons ci ratio: 2.312893e-01	ci left: 7.691608e-04	ci right 9.731017e-04	k: 286	n:330000
KS ci ratio: 1.051929e-02	ci left: 2.946153e-01	ci right 2.977338e-01	k: 97737	n:330000
KIAA0391   330000 perm   106 sec   (3123 perm/sec)   p_kst 2.961727e-01   p_cons 8.666667e-04   p_joint 2.715152e-03

Joint ci ratio: 1.294165e-01	ci left: 2.516972e-03	ci right 2.868060e-03	k: 914	n:340000
Cons ci ratio: 2.273618e-01	ci left: 7.742609e-04	ci right 9.755792e-04	k: 296	n:340000
KS ci ratio: 1.036291e-02	ci left: 2.946597e-01	ci right 2.977320e-01	k: 100706	n:340000
KIAA0391   340000 perm   110 sec   (3088 perm/sec)   p_kst 2.961941e-01   p_cons 8.705882e-04   p_joint 2.688235e-03

Joint ci ratio: 1.279576e-01	ci left: 2.503126e-03	ci right 2.848047e-03	k: 935	n:350000
Cons ci ratio: 2.251003e-01	ci left: 7.683103e-04	ci right 9.658187e-04	k: 302	n:350000
KS ci ratio: 1.021414e-02	ci left: 2.946677e-01	ci right 2.976957e-01	k: 103663	n:350000
KIAA0391   350000 perm   115 sec   (3052 perm/sec)   p_kst 2.961800e-01   p_cons 8.628571e-04   p_joint 2.671429e-03

Joint ci ratio: 1.263485e-01	ci left: 2.498140e-03	ci right 2.837722e-03	k: 959	n:360000
Cons ci ratio: 2.229050e-01	ci left: 7.626996e-04	ci right 9.565910e-04	k: 308	n:360000
KS ci ratio: 1.006389e-02	ci left: 2.949945e-01	ci right 2.979810e-01	k: 106735	n:360000
KIAA0391   360000 perm   119 sec   (3018 perm/sec)   p_kst 2.964861e-01   p_cons 8.555556e-04   p_joint 2.663889e-03

Joint ci ratio: 1.250537e-01	ci left: 2.482976e-03	ci right 2.816781e-03	k: 979	n:370000
Cons ci ratio: 2.200745e-01	ci left: 7.625083e-04	ci right 9.535565e-04	k: 316	n:370000
KS ci ratio: 9.927534e-03	ci left: 2.949909e-01	ci right 2.979367e-01	k: 109691	n:370000
KIAA0391   370000 perm   124 sec   (2985 perm/sec)   p_kst 2.964622e-01   p_cons 8.540541e-04   p_joint 2.645946e-03

Joint ci ratio: 1.251221e-01	ci left: 2.415080e-03	ci right 2.739948e-03	k: 978	n:380000
Cons ci ratio: 2.150437e-01	ci left: 7.797661e-04	ci right 9.700829e-04	k: 331	n:380000
KS ci ratio: 9.801272e-03	ci left: 2.947880e-01	ci right 2.976941e-01	k: 112571	n:380000
KIAA0391   380000 perm   129 sec   (2953 perm/sec)   p_kst 2.962395e-01   p_cons 8.710526e-04   p_joint 2.573684e-03

Joint ci ratio: 1.235546e-01	ci left: 2.415263e-03	ci right 2.735788e-03	k: 1003	n:390000
Cons ci ratio: 2.115667e-01	ci left: 7.864709e-04	ci right 9.749181e-04	k: 342	n:390000
KS ci ratio: 9.674288e-03	ci left: 2.948287e-01	ci right 2.976974e-01	k: 115542	n:390000
KIAA0391   390000 perm   133 sec   (2922 perm/sec)   p_kst 2.962615e-01   p_cons 8.769231e-04   p_joint 2.571795e-03

Joint ci ratio: 1.400416e-01	ci left: 1.818068e-03	ci right 2.094226e-03	k: 781	n:400000
Cons ci ratio: 2.094409e-01	ci left: 7.833865e-04	ci right 9.689666e-04	k: 349	n:400000
KS ci ratio: 9.553261e-03	ci left: 2.948178e-01	ci right 2.976502e-01	k: 118493	n:400000
KIAA0391   400000 perm   138 sec   (2890 perm/sec)   p_kst 2.962325e-01   p_cons 8.725000e-04   p_joint 1.952500e-03

Joint ci ratio: 1.381120e-01	ci left: 1.825517e-03	ci right 2.098671e-03	k: 803	n:410000
Cons ci ratio: 2.059394e-01	ci left: 7.920260e-04	ci right 9.761211e-04	k: 361	n:410000
KS ci ratio: 9.439315e-03	ci left: 2.946906e-01	ci right 2.974879e-01	k: 121396	n:410000
KIAA0391   410000 perm   143 sec   (2861 perm/sec)   p_kst 2.960878e-01   p_cons 8.804878e-04   p_joint 1.958537e-03

Joint ci ratio: 1.360949e-01	ci left: 1.837236e-03	ci right 2.107804e-03	k: 827	n:420000
Cons ci ratio: 2.015321e-01	ci left: 8.093210e-04	ci right 9.929150e-04	k: 377	n:420000
KS ci ratio: 9.323385e-03	ci left: 2.948360e-01	ci right 2.976001e-01	k: 124411	n:420000
KIAA0391   420000 perm   148 sec   (2831 perm/sec)   p_kst 2.962167e-01   p_cons 8.976190e-04   p_joint 1.969048e-03

Joint ci ratio: 1.343218e-01	ci left: 1.843942e-03	ci right 2.111677e-03	k: 849	n:430000
Cons ci ratio: 1.989178e-01	ci left: 8.125897e-04	ci right 9.942440e-04	k: 387	n:430000
KS ci ratio: 9.212393e-03	ci left: 2.949400e-01	ci right 2.976720e-01	k: 127411	n:430000
KIAA0391   430000 perm   153 sec   (2802 perm/sec)   p_kst 2.963047e-01   p_cons 9.000000e-04   p_joint 1.974419e-03

Joint ci ratio: 1.388148e-01	ci left: 1.683490e-03	ci right 1.936779e-03	k: 795	n:440000
Cons ci ratio: 1.966502e-01	ci left: 8.135634e-04	ci right 9.931136e-04	k: 396	n:440000
KS ci ratio: 9.105967e-03	ci left: 2.950077e-01	ci right 2.977086e-01	k: 130397	n:440000
KIAA0391   440000 perm   159 sec   (2773 perm/sec)   p_kst 2.963568e-01   p_cons 9.000000e-04   p_joint 1.806818e-03

Joint ci ratio: 1.374407e-01	ci left: 1.680405e-03	ci right 1.930524e-03	k: 811	n:450000
Cons ci ratio: 1.942191e-01	ci left: 8.166193e-04	ci right 9.943525e-04	k: 406	n:450000
KS ci ratio: 9.005737e-03	ci left: 2.949527e-01	ci right 2.976232e-01	k: 133329	n:450000
KIAA0391   450000 perm   164 sec   (2742 perm/sec)   p_kst 2.962867e-01   p_cons 9.022222e-04   p_joint 1.802222e-03

Joint ci ratio: 1.361066e-01	ci left: 1.677467e-03	ci right 1.924528e-03	k: 827	n:460000
Cons ci ratio: 1.925706e-01	ci left: 8.133471e-04	ci right 9.886896e-04	k: 413	n:460000
KS ci ratio: 8.909535e-03	ci left: 2.948634e-01	ci right 2.975044e-01	k: 136244	n:460000
KIAA0391   460000 perm   170 sec   (2711 perm/sec)   p_kst 2.961826e-01   p_cons 8.978261e-04   p_joint 1.797826e-03

Joint ci ratio: 1.347307e-01	ci left: 1.676721e-03	ci right 1.920976e-03	k: 844	n:470000
Cons ci ratio: 1.909633e-01	ci left: 8.102203e-04	ci right 9.832617e-04	k: 420	n:470000
KS ci ratio: 8.815001e-03	ci left: 2.948418e-01	ci right 2.974544e-01	k: 139189	n:470000
KIAA0391   470000 perm   175 sec   (2684 perm/sec)   p_kst 2.961468e-01   p_cons 8.936170e-04   p_joint 1.795745e-03

Joint ci ratio: 1.360295e-01	ci left: 1.609581e-03	ci right 1.846498e-03	k: 828	n:480000
Cons ci ratio: 1.885160e-01	ci left: 8.151691e-04	ci right 9.867807e-04	k: 431	n:480000
KS ci ratio: 8.725725e-03	ci left: 2.947109e-01	ci right 2.972958e-01	k: 142081	n:480000
KIAA0391   480000 perm   181 sec   (2657 perm/sec)   p_kst 2.960021e-01   p_cons 8.979167e-04   p_joint 1.725000e-03

Joint ci ratio: 1.348156e-01	ci left: 1.606307e-03	ci right 1.840464e-03	k: 843	n:490000
Cons ci ratio: 1.874352e-01	ci left: 8.082566e-04	ci right 9.773264e-04	k: 436	n:490000
KS ci ratio: 8.636483e-03	ci left: 2.947118e-01	ci right 2.972702e-01	k: 145035	n:490000
KIAA0391   490000 perm   186 sec   (2631 perm/sec)   p_kst 2.959898e-01   p_cons 8.897959e-04   p_joint 1.720408e-03

Joint ci ratio: 1.356251e-01	ci left: 1.554855e-03	ci right 1.782982e-03	k: 833	n:500000
Cons ci ratio: 1.851194e-01	ci left: 8.130658e-04	ci right 9.808044e-04	k: 447	n:500000
KS ci ratio: 8.550951e-03	ci left: 2.946630e-01	ci right 2.971954e-01	k: 147964	n:500000
KIAA0391   500000 perm   192 sec   (2605 perm/sec)   p_kst 2.959280e-01   p_cons 8.940000e-04   p_joint 1.666000e-03

Joint ci ratio: 1.341846e-01	ci left: 1.558471e-03	ci right 1.784506e-03	k: 851	n:510000
Cons ci ratio: 1.832875e-01	ci left: 8.139567e-04	ci right 9.800328e-04	k: 456	n:510000
KS ci ratio: 8.465998e-03	ci left: 2.947101e-01	ci right 2.972177e-01	k: 150941	n:510000
KIAA0391   510000 perm   198 sec   (2578 perm/sec)   p_kst 2.959627e-01   p_cons 8.941176e-04   p_joint 1.668627e-03

Joint ci ratio: 1.332501e-01	ci left: 1.550805e-03	ci right 1.774037e-03	k: 863	n:520000
Cons ci ratio: 1.820966e-01	ci left: 8.093143e-04	ci right 9.732518e-04	k: 462	n:520000
KS ci ratio: 8.382948e-03	ci left: 2.947844e-01	ci right 2.972679e-01	k: 153933	n:520000
KIAA0391   520000 perm   204 sec   (2546 perm/sec)   p_kst 2.960250e-01   p_cons 8.884615e-04   p_joint 1.659615e-03

Joint ci ratio: 1.127971e-01	ci left: 2.145311e-03	ci right 2.403574e-03	k: 1204	n:530000
Cons ci ratio: 1.801612e-01	ci left: 8.120568e-04	ci right 9.746109e-04	k: 472	n:530000
KS ci ratio: 8.304023e-03	ci left: 2.947693e-01	ci right 2.972291e-01	k: 156879	n:530000
KIAA0391   530000 perm   210 sec   (2522 perm/sec)   p_kst 2.959981e-01   p_cons 8.905660e-04   p_joint 2.271698e-03

Joint ci ratio: 1.114631e-01	ci left: 2.157781e-03	ci right 2.414272e-03	k: 1233	n:540000
Cons ci ratio: 1.779179e-01	ci left: 8.182453e-04	ci right 9.797793e-04	k: 484	n:540000
KS ci ratio: 8.226153e-03	ci left: 2.948122e-01	ci right 2.972492e-01	k: 159856	n:540000
KIAA0391   540000 perm   216 sec   (2495 perm/sec)   p_kst 2.960296e-01   p_cons 8.962963e-04   p_joint 2.283333e-03

Joint ci ratio: 1.175399e-01	ci left: 1.899532e-03	ci right 2.138490e-03	k: 1109	n:550000
Cons ci ratio: 1.874443e-01	ci left: 7.200800e-04	ci right 8.707132e-04	k: 436	n:550000
KS ci ratio: 8.149332e-03	ci left: 2.949100e-01	ci right 2.973249e-01	k: 162864	n:550000
KIAA0391   550000 perm   223 sec   (2465 perm/sec)   p_kst 2.961164e-01   p_cons 7.927273e-04   p_joint 2.016364e-03

Joint ci ratio: 1.167543e-01	ci left: 1.891612e-03	ci right 2.127873e-03	k: 1124	n:560000
Cons ci ratio: 1.847161e-01	ci left: 7.293547e-04	ci right 8.794587e-04	k: 449	n:560000
KS ci ratio: 8.076906e-03	ci left: 2.948866e-01	ci right 2.972798e-01	k: 165806	n:560000
KIAA0391   560000 perm   229 sec   (2443 perm/sec)   p_kst 2.960821e-01   p_cons 8.017857e-04   p_joint 2.007143e-03

Joint ci ratio: 1.167044e-01	ci left: 1.860127e-03	ci right 2.092350e-03	k: 1125	n:570000
Cons ci ratio: 1.832962e-01	ci left: 7.282740e-04	ci right 8.768754e-04	k: 456	n:570000
KS ci ratio: 8.005467e-03	ci left: 2.949115e-01	ci right 2.972836e-01	k: 168775	n:570000
KIAA0391   570000 perm   235 sec   (2420 perm/sec)   p_kst 2.960965e-01   p_cons 8.000000e-04   p_joint 1.973684e-03

Joint ci ratio: 1.163446e-01	ci left: 1.839772e-03	ci right 2.068697e-03	k: 1132	n:580000
Cons ci ratio: 1.817126e-01	ci left: 7.288806e-04	ci right 8.761794e-04	k: 464	n:580000
KS ci ratio: 7.936712e-03	ci left: 2.948925e-01	ci right 2.972440e-01	k: 171719	n:580000
KIAA0391   580000 perm   242 sec   (2399 perm/sec)   p_kst 2.960672e-01   p_cons 8.000000e-04   p_joint 1.951724e-03

Joint ci ratio: 9.814411e-02	ci left: 2.564231e-03	ci right 2.830520e-03	k: 1590	n:590000
Cons ci ratio: 1.797894e-01	ci left: 7.327091e-04	ci right 8.790439e-04	k: 474	n:590000
KS ci ratio: 7.867331e-03	ci left: 2.949996e-01	ci right 2.973312e-01	k: 174737	n:590000
KIAA0391   590000 perm   248 sec   (2379 perm/sec)   p_kst 2.961644e-01   p_cons 8.033898e-04   p_joint 2.694915e-03

Joint ci ratio: 9.741238e-02	ci left: 2.560515e-03	ci right 2.824323e-03	k: 1614	n:600000
Cons ci ratio: 1.790377e-01	ci left: 7.268644e-04	ci right 8.713592e-04	k: 478	n:600000
KS ci ratio: 7.799613e-03	ci left: 2.951098e-01	ci right 2.974222e-01	k: 177759	n:600000
KIAA0391   600000 perm   254 sec   (2359 perm/sec)   p_kst 2.962650e-01   p_cons 7.966667e-04   p_joint 2.690000e-03

Joint ci ratio: 9.663768e-02	ci left: 2.560128e-03	ci right 2.821680e-03	k: 1640	n:610000
Cons ci ratio: 1.777438e-01	ci left: 7.259116e-04	ci right 8.690620e-04	k: 485	n:610000
KS ci ratio: 7.736046e-03	ci left: 2.950855e-01	ci right 2.973787e-01	k: 180701	n:610000
KIAA0391   610000 perm   261 sec   (2339 perm/sec)   p_kst 2.962311e-01   p_cons 7.950820e-04   p_joint 2.688525e-03

Joint ci ratio: 1.012268e-01	ci left: 2.290732e-03	ci right 2.536535e-03	k: 1495	n:620000
Cons ci ratio: 1.759426e-01	ci left: 7.296185e-04	ci right 8.718869e-04	k: 495	n:620000
KS ci ratio: 7.672257e-03	ci left: 2.951571e-01	ci right 2.974319e-01	k: 183702	n:620000
KIAA0391   620000 perm   267 sec   (2319 perm/sec)   p_kst 2.962935e-01   p_cons 7.983871e-04   p_joint 2.411290e-03

Joint ci ratio: 1.005239e-01	ci left: 2.286863e-03	ci right 2.530447e-03	k: 1516	n:630000
Cons ci ratio: 1.748883e-01	ci left: 7.271429e-04	ci right 8.679891e-04	k: 501	n:630000
KS ci ratio: 7.613092e-03	ci left: 2.950584e-01	ci right 2.973149e-01	k: 186597	n:630000
KIAA0391   630000 perm   274 sec   (2300 perm/sec)   p_kst 2.961857e-01   p_cons 7.952381e-04   p_joint 2.406349e-03

Joint ci ratio: 1.001625e-01	ci left: 2.267886e-03	ci right 2.508529e-03	k: 1527	n:640000
Cons ci ratio: 1.731717e-01	ci left: 7.307258e-04	ci right 8.707315e-04	k: 511	n:640000
KS ci ratio: 7.551537e-03	ci left: 2.951689e-01	ci right 2.974079e-01	k: 189624	n:640000
KIAA0391   640000 perm   281 sec   (2279 perm/sec)   p_kst 2.962875e-01   p_cons 7.984375e-04   p_joint 2.385938e-03

Joint ci ratio: 9.168167e-02	ci left: 2.676000e-03	ci right 2.934617e-03	k: 1822	n:650000
Cons ci ratio: 1.716693e-01	ci left: 7.327326e-04	ci right 8.717787e-04	k: 520	n:650000
KS ci ratio: 7.495820e-03	ci left: 2.950333e-01	ci right 2.972547e-01	k: 192493	n:650000
KIAA0391   650000 perm   288 sec   (2261 perm/sec)   p_kst 2.961431e-01   p_cons 8.000000e-04   p_joint 2.803077e-03

Joint ci ratio: 9.113384e-02	ci left: 2.668025e-03	ci right 2.924249e-03	k: 1844	n:660000
Cons ci ratio: 1.703663e-01	ci left: 7.332330e-04	ci right 8.712094e-04	k: 528	n:660000
KS ci ratio: 7.441019e-03	ci left: 2.949185e-01	ci right 2.971227e-01	k: 195373	n:660000
KIAA0391   660000 perm   294 sec   (2242 perm/sec)   p_kst 2.960197e-01   p_cons 8.000000e-04   p_joint 2.793939e-03

Joint ci ratio: 9.032926e-02	ci left: 2.676340e-03	ci right 2.930974e-03	k: 1877	n:670000
Cons ci ratio: 1.687783e-01	ci left: 7.365813e-04	ci right 8.737644e-04	k: 538	n:670000
KS ci ratio: 7.385683e-03	ci left: 2.949041e-01	ci right 2.970917e-01	k: 198318	n:670000
KIAA0391   670000 perm   301 sec   (2224 perm/sec)   p_kst 2.959970e-01   p_cons 8.029851e-04   p_joint 2.801493e-03

Joint ci ratio: 8.978149e-02	ci left: 2.670044e-03	ci right 2.922457e-03	k: 1900	n:680000
Cons ci ratio: 1.672339e-01	ci left: 7.398368e-04	ci right 8.762384e-04	k: 548	n:680000
KS ci ratio: 7.333167e-03	ci left: 2.947991e-01	ci right 2.969703e-01	k: 201201	n:680000
KIAA0391   680000 perm   308 sec   (2205 perm/sec)   p_kst 2.958838e-01   p_cons 8.058824e-04   p_joint 2.794118e-03

Joint ci ratio: 8.994953e-02	ci left: 2.621428e-03	ci right 2.869733e-03	k: 1893	n:690000
Cons ci ratio: 1.649942e-01	ci left: 7.499503e-04	ci right 8.861810e-04	k: 563	n:690000
KS ci ratio: 7.279653e-03	ci left: 2.948173e-01	ci right 2.969728e-01	k: 204167	n:690000
KIAA0391   690000 perm   315 sec   (2187 perm/sec)   p_kst 2.958942e-01   p_cons 8.159420e-04   p_joint 2.743478e-03

Joint ci ratio: 8.940858e-02	ci left: 2.616099e-03	ci right 2.862331e-03	k: 1916	n:700000
Cons ci ratio: 1.638363e-01	ci left: 7.501951e-04	ci right 8.854196e-04	k: 571	n:700000
KS ci ratio: 7.226477e-03	ci left: 2.948822e-01	ci right 2.970223e-01	k: 207166	n:700000
KIAA0391   700000 perm   323 sec   (2170 perm/sec)   p_kst 2.959514e-01   p_cons 8.157143e-04   p_joint 2.737143e-03

Joint ci ratio: 8.906160e-02	ci left: 2.599906e-03	ci right 2.843616e-03	k: 1931	n:710000
Cons ci ratio: 1.629840e-01	ci left: 7.477340e-04	ci right 8.817450e-04	k: 577	n:710000
KS ci ratio: 7.177116e-03	ci left: 2.947906e-01	ci right 2.969153e-01	k: 210055	n:710000
KIAA0391   710000 perm   330 sec   (2153 perm/sec)   p_kst 2.958521e-01   p_cons 8.126761e-04   p_joint 2.719718e-03

Joint ci ratio: 8.906329e-02	ci left: 2.563794e-03	ci right 2.804123e-03	k: 1931	n:720000
Cons ci ratio: 1.611809e-01	ci left: 7.546722e-04	ci right 8.882856e-04	k: 590	n:720000
KS ci ratio: 7.129728e-03	ci left: 2.946446e-01	ci right 2.967542e-01	k: 212903	n:720000
KIAA0391   720000 perm   338 sec   (2132 perm/sec)   p_kst 2.956986e-01   p_cons 8.194444e-04   p_joint 2.681944e-03

Joint ci ratio: 8.833443e-02	ci left: 2.571538e-03	ci right 2.810518e-03	k: 1963	n:730000
Cons ci ratio: 1.597013e-01	ci left: 7.587979e-04	ci right 8.917901e-04	k: 601	n:730000
KS ci ratio: 7.080749e-03	ci left: 2.946505e-01	ci right 2.967456e-01	k: 215859	n:730000
KIAA0391   730000 perm   345 sec   (2115 perm/sec)   p_kst 2.956973e-01   p_cons 8.232877e-04   p_joint 2.689041e-03

Joint ci ratio: 8.459570e-02	ci left: 2.770818e-03	ci right 3.016882e-03	k: 2140	n:740000
Cons ci ratio: 1.582616e-01	ci left: 7.628174e-04	ci right 8.951945e-04	k: 612	n:740000
KS ci ratio: 7.032538e-03	ci left: 2.946698e-01	ci right 2.967507e-01	k: 218825	n:740000
KIAA0391   740000 perm   353 sec   (2099 perm/sec)   p_kst 2.957095e-01   p_cons 8.270270e-04   p_joint 2.891892e-03

Joint ci ratio: 8.400911e-02	ci left: 2.773031e-03	ci right 3.017500e-03	k: 2170	n:750000
Cons ci ratio: 1.572389e-01	ci left: 7.628921e-04	ci right 8.943460e-04	k: 620	n:750000
KS ci ratio: 6.984515e-03	ci left: 2.947352e-01	ci right 2.968023e-01	k: 221826	n:750000
KIAA0391   750000 perm   360 sec   (2083 perm/sec)   p_kst 2.957680e-01   p_cons 8.266667e-04   p_joint 2.893333e-03

Joint ci ratio: 8.347260e-02	ci left: 2.772614e-03	ci right 3.015410e-03	k: 2198	n:760000
Cons ci ratio: 1.569870e-01	ci left: 7.553820e-04	ci right 8.853135e-04	k: 622	n:760000
KS ci ratio: 6.939283e-03	ci left: 2.946899e-01	ci right 2.967432e-01	k: 224744	n:760000
KIAA0391   760000 perm   368 sec   (2067 perm/sec)   p_kst 2.957158e-01   p_cons 8.184211e-04   p_joint 2.892105e-03

Joint ci ratio: 8.405111e-02	ci left: 2.698457e-03	ci right 2.936477e-03	k: 2168	n:770000
Cons ci ratio: 1.550083e-01	ci left: 7.655402e-04	ci right 8.954052e-04	k: 638	n:770000
KS ci ratio: 6.893713e-03	ci left: 2.947184e-01	ci right 2.967584e-01	k: 227718	n:770000
KIAA0391   770000 perm   375 sec   (2052 perm/sec)   p_kst 2.957377e-01   p_cons 8.285714e-04   p_joint 2.815584e-03

Joint ci ratio: 8.353287e-02	ci left: 2.697752e-03	ci right 2.934170e-03	k: 2195	n:780000
Cons ci ratio: 1.535727e-01	ci left: 7.705164e-04	ci right 8.999036e-04	k: 650	n:780000
KS ci ratio: 6.850337e-03	ci left: 2.946669e-01	ci right 2.966936e-01	k: 230630	n:780000
KIAA0391   780000 perm   383 sec   (2037 perm/sec)   p_kst 2.956795e-01   p_cons 8.333333e-04   p_joint 2.814103e-03

Joint ci ratio: 8.163633e-02	ci left: 2.791296e-03	ci right 3.030094e-03	k: 2298	n:790000
Cons ci ratio: 1.521762e-01	ci left: 7.753720e-04	ci right 9.042827e-04	k: 662	n:790000
KS ci ratio: 6.807935e-03	ci left: 2.946065e-01	ci right 2.966203e-01	k: 233534	n:790000
KIAA0391   790000 perm   391 sec   (2023 perm/sec)   p_kst 2.956127e-01   p_cons 8.379747e-04   p_joint 2.908861e-03

Joint ci ratio: 8.102162e-02	ci left: 2.799265e-03	ci right 3.036857e-03	k: 2333	n:800000
Cons ci ratio: 1.509290e-01	ci left: 7.789086e-04	ci right 9.072501e-04	k: 673	n:800000
KS ci ratio: 6.765133e-03	ci left: 2.946202e-01	ci right 2.966213e-01	k: 236496	n:800000
KIAA0391   800000 perm   399 sec   (2008 perm/sec)   p_kst 2.956200e-01   p_cons 8.412500e-04   p_joint 2.916250e-03

Joint ci ratio: 8.109280e-02	ci left: 2.759866e-03	ci right 2.994329e-03	k: 2329	n:810000
Cons ci ratio: 1.500413e-01	ci left: 7.787971e-04	ci right 9.062977e-04	k: 681	n:810000
KS ci ratio: 6.723825e-03	ci left: 2.945904e-01	ci right 2.965790e-01	k: 239423	n:810000
KIAA0391   810000 perm   407 sec   (1993 perm/sec)   p_kst 2.955840e-01   p_cons 8.407407e-04   p_joint 2.875309e-03

Joint ci ratio: 8.180141e-02	ci left: 2.678417e-03	ci right 2.908044e-03	k: 2289	n:820000
Cons ci ratio: 1.490609e-01	ci left: 7.798645e-04	ci right 9.066312e-04	k: 690	n:820000
KS ci ratio: 6.681543e-03	ci left: 2.946685e-01	ci right 2.966451e-01	k: 242438	n:820000
KIAA0391   820000 perm   415 sec   (1978 perm/sec)   p_kst 2.956561e-01   p_cons 8.414634e-04   p_joint 2.791463e-03

Joint ci ratio: 8.134105e-02	ci left: 2.676833e-03	ci right 2.904972e-03	k: 2315	n:830000
Cons ci ratio: 1.479937e-01	ci left: 7.820690e-04	ci right 9.082035e-04	k: 700	n:830000
KS ci ratio: 6.641297e-03	ci left: 2.946666e-01	ci right 2.966312e-01	k: 245388	n:830000
KIAA0391   830000 perm   423 sec   (1963 perm/sec)   p_kst 2.956482e-01   p_cons 8.433735e-04   p_joint 2.789157e-03

Joint ci ratio: 8.076742e-02	ci left: 2.683456e-03	ci right 2.910470e-03	k: 2348	n:840000
Cons ci ratio: 1.471565e-01	ci left: 7.819308e-04	ci right 9.072668e-04	k: 708	n:840000
KS ci ratio: 6.602525e-03	ci left: 2.946172e-01	ci right 2.965700e-01	k: 248298	n:840000
KIAA0391   840000 perm   431 sec   (1948 perm/sec)   p_kst 2.955929e-01   p_cons 8.428571e-04   p_joint 2.795238e-03

Joint ci ratio: 8.173391e-02	ci left: 2.588490e-03	ci right 2.810215e-03	k: 2293	n:850000
Cons ci ratio: 1.468466e-01	ci left: 7.761311e-04	ci right 9.002524e-04	k: 711	n:850000
KS ci ratio: 6.563978e-03	ci left: 2.945971e-01	ci right 2.965384e-01	k: 251232	n:850000
KIAA0391   850000 perm   440 sec   (1934 perm/sec)   p_kst 2.955671e-01   p_cons 8.364706e-04   p_joint 2.697647e-03

Joint ci ratio: 8.639057e-02	ci left: 2.285168e-03	ci right 2.492625e-03	k: 2053	n:860000
Cons ci ratio: 1.462319e-01	ci left: 7.738272e-04	ci right 8.970168e-04	k: 717	n:860000
KS ci ratio: 6.524624e-03	ci left: 2.946717e-01	ci right 2.966018e-01	k: 254247	n:860000
KIAA0391   860000 perm   448 sec   (1919 perm/sec)   p_kst 2.956360e-01   p_cons 8.337209e-04   p_joint 2.387209e-03

Joint ci ratio: 7.728603e-02	ci left: 2.834303e-03	ci right 3.063279e-03	k: 2564	n:870000
Cons ci ratio: 1.451243e-01	ci left: 7.771155e-04	ci right 8.998104e-04	k: 728	n:870000
KS ci ratio: 6.484590e-03	ci left: 2.948330e-01	ci right 2.967522e-01	k: 257339	n:870000
KIAA0391   870000 perm   457 sec   (1906 perm/sec)   p_kst 2.957920e-01   p_cons 8.367816e-04   p_joint 2.947126e-03

Joint ci ratio: 7.742367e-02	ci left: 2.792064e-03	ci right 3.018046e-03	k: 2555	n:880000
Cons ci ratio: 1.443345e-01	ci left: 7.770464e-04	ci right 8.990052e-04	k: 736	n:880000
KS ci ratio: 6.447481e-03	ci left: 2.948488e-01	ci right 2.967571e-01	k: 260306	n:880000
KIAA0391   880000 perm   465 sec   (1891 perm/sec)   p_kst 2.958023e-01   p_cons 8.363636e-04   p_joint 2.903409e-03

Joint ci ratio: 7.742494e-02	ci left: 2.760690e-03	ci right 2.984138e-03	k: 2555	n:890000
Cons ci ratio: 1.435575e-01	ci left: 7.769805e-04	ci right 8.982163e-04	k: 744	n:890000
KS ci ratio: 6.410621e-03	ci left: 2.948889e-01	ci right 2.967865e-01	k: 263295	n:890000
KIAA0391   890000 perm   474 sec   (1878 perm/sec)   p_kst 2.958371e-01   p_cons 8.359551e-04   p_joint 2.870787e-03

Joint ci ratio: 7.701929e-02	ci left: 2.759437e-03	ci right 2.981560e-03	k: 2582	n:900000
Cons ci ratio: 1.423208e-01	ci left: 7.822755e-04	ci right 9.031966e-04	k: 757	n:900000
KS ci ratio: 6.374455e-03	ci left: 2.949238e-01	ci right 2.968109e-01	k: 266280	n:900000
KIAA0391   900000 perm   483 sec   (1864 perm/sec)   p_kst 2.958667e-01   p_cons 8.411111e-04   p_joint 2.868889e-03

Joint ci ratio: 7.678239e-02	ci left: 2.746357e-03	ci right 2.966717e-03	k: 2598	n:910000
Cons ci ratio: 1.417610e-01	ci left: 7.800381e-04	ci right 9.000990e-04	k: 763	n:910000
KS ci ratio: 6.338375e-03	ci left: 2.949919e-01	ci right 2.968687e-01	k: 269296	n:910000
KIAA0391   910000 perm   492 sec   (1851 perm/sec)   p_kst 2.959297e-01   p_cons 8.384615e-04   p_joint 2.854945e-03

Joint ci ratio: 7.659173e-02	ci left: 2.730364e-03	ci right 2.948872e-03	k: 2611	n:920000
Cons ci ratio: 1.412078e-01	ci left: 7.778502e-04	ci right 8.970678e-04	k: 769	n:920000
KS ci ratio: 6.303543e-03	ci left: 2.950163e-01	ci right 2.968828e-01	k: 272273	n:920000
KIAA0391   920000 perm   500 sec   (1839 perm/sec)   p_kst 2.959489e-01   p_cons 8.358696e-04   p_joint 2.838043e-03

Joint ci ratio: 7.627146e-02	ci left: 2.724208e-03	ci right 2.941272e-03	k: 2633	n:930000
Cons ci ratio: 1.408428e-01	ci left: 7.736354e-04	ci right 8.918748e-04	k: 773	n:930000
KS ci ratio: 6.269262e-03	ci left: 2.950412e-01	ci right 2.968977e-01	k: 275251	n:930000
KIAA0391   930000 perm   509 sec   (1826 perm/sec)   p_kst 2.959688e-01   p_cons 8.311828e-04   p_joint 2.831183e-03

Joint ci ratio: 8.023344e-02	ci left: 2.431327e-03	ci right 2.635588e-03	k: 2380	n:940000
Cons ci ratio: 1.400309e-01	ci left: 7.746433e-04	ci right 8.922974e-04	k: 782	n:940000
KS ci ratio: 6.235152e-03	ci left: 2.950911e-01	ci right 2.969378e-01	k: 278253	n:940000
KIAA0391   940000 perm   519 sec   (1812 perm/sec)   p_kst 2.960138e-01   p_cons 8.319149e-04   p_joint 2.531915e-03

Joint ci ratio: 8.048908e-02	ci left: 2.390260e-03	ci right 2.591740e-03	k: 2365	n:950000
Cons ci ratio: 1.389698e-01	ci left: 7.786800e-04	ci right 8.959768e-04	k: 794	n:950000
KS ci ratio: 6.200372e-03	ci left: 2.952220e-01	ci right 2.970592e-01	k: 281333	n:950000
KIAA0391   950000 perm   528 sec   (1800 perm/sec)   p_kst 2.961400e-01   p_cons 8.357895e-04   p_joint 2.489474e-03

Joint ci ratio: 8.010077e-02	ci left: 2.388838e-03	ci right 2.589182e-03	k: 2388	n:960000
Cons ci ratio: 1.381898e-01	ci left: 7.796188e-04	ci right 8.963435e-04	k: 803	n:960000
KS ci ratio: 6.168601e-03	ci left: 2.951858e-01	ci right 2.970133e-01	k: 284255	n:960000
KIAA0391   960000 perm   537 sec   (1787 perm/sec)   p_kst 2.960990e-01   p_cons 8.364583e-04   p_joint 2.487500e-03

Joint ci ratio: 8.045707e-02	ci left: 2.342994e-03	ci right 2.540408e-03	k: 2367	n:970000
Cons ci ratio: 1.375922e-01	ci left: 7.785490e-04	ci right 8.945682e-04	k: 810	n:970000
KS ci ratio: 6.136434e-03	ci left: 2.952101e-01	ci right 2.970282e-01	k: 287235	n:970000
KIAA0391   970000 perm   547 sec   (1775 perm/sec)   p_kst 2.961186e-01   p_cons 8.350515e-04   p_joint 2.440206e-03

Joint ci ratio: 6.750028e-02	ci left: 3.313801e-03	ci right 3.546292e-03	k: 3360	n:980000
Cons ci ratio: 1.368350e-01	ci left: 7.794730e-04	ci right 8.949387e-04	k: 819	n:980000
KS ci ratio: 6.104689e-03	ci left: 2.952390e-01	ci right 2.970479e-01	k: 290220	n:980000
KIAA0391   980000 perm   556 sec   (1763 perm/sec)   p_kst 2.961429e-01   p_cons 8.357143e-04   p_joint 3.428571e-03

Joint ci ratio: 6.711187e-02	ci left: 3.319059e-03	ci right 3.550527e-03	k: 3399	n:990000
Cons ci ratio: 1.364199e-01	ci left: 7.764774e-04	ci right 8.911220e-04	k: 824	n:990000
KS ci ratio: 6.072241e-03	ci left: 2.953491e-01	ci right 2.971490e-01	k: 293286	n:990000
KIAA0391   990000 perm   565 sec   (1751 perm/sec)   p_kst 2.962485e-01   p_cons 8.323232e-04   p_joint 3.433333e-03

Joint ci ratio: 6.768470e-02	ci left: 3.229825e-03	ci right 3.457067e-03	k: 3342	n:1000000
Cons ci ratio: 1.360907e-01	ci left: 7.725761e-04	ci right 8.863472e-04	k: 828	n:1000000
KS ci ratio: 6.040753e-03	ci left: 2.954261e-01	ci right 2.972171e-01	k: 296321	n:1000000
KIAA0391   1000000 perm   575 sec   (1739 perm/sec)   p_kst 2.963210e-01   p_cons 8.280000e-04   p_joint 3.342000e-03

Joint ci ratio: 6.829314e-02	ci left: 3.140418e-03	ci right 3.363436e-03	k: 3283	n:1010000
Cons ci ratio: 1.353579e-01	ci left: 7.735352e-04	ci right 8.867847e-04	k: 837	n:1010000
KS ci ratio: 6.010677e-03	ci left: 2.954373e-01	ci right 2.972194e-01	k: 299291	n:1010000
KIAA0391   1010000 perm   585 sec   (1728 perm/sec)   p_kst 2.963277e-01   p_cons 8.287129e-04   p_joint 3.250495e-03

Joint ci ratio: 6.799370e-02	ci left: 3.137577e-03	ci right 3.359377e-03	k: 3312	n:1020000
Cons ci ratio: 1.347962e-01	ci left: 7.725823e-04	ci right 8.851853e-04	k: 844	n:1020000
KS ci ratio: 5.981412e-03	ci left: 2.954228e-01	ci right 2.971960e-01	k: 302235	n:1020000
KIAA0391   1020000 perm   594 sec   (1716 perm/sec)   p_kst 2.963088e-01   p_cons 8.274510e-04   p_joint 3.247059e-03

Joint ci ratio: 6.942852e-02	ci left: 2.978290e-03	ci right 3.193451e-03	k: 3177	n:1030000
Cons ci ratio: 1.339271e-01	ci left: 7.754023e-04	ci right 8.876296e-04	k: 855	n:1030000
KS ci ratio: 5.952819e-03	ci left: 2.953911e-01	ci right 2.971557e-01	k: 305161	n:1030000
KIAA0391   1030000 perm   604 sec   (1705 perm/sec)   p_kst 2.962728e-01   p_cons 8.300971e-04   p_joint 3.084466e-03

Joint ci ratio: 6.904919e-02	ci left: 2.982724e-03	ci right 3.196981e-03	k: 3212	n:1040000
Cons ci ratio: 1.334603e-01	ci left: 7.735227e-04	ci right 8.850568e-04	k: 861	n:1040000
KS ci ratio: 5.924223e-03	ci left: 2.953889e-01	ci right 2.971450e-01	k: 308117	n:1040000
KIAA0391   1040000 perm   614 sec   (1694 perm/sec)   p_kst 2.962663e-01   p_cons 8.278846e-04   p_joint 3.088462e-03

Joint ci ratio: 6.870785e-02	ci left: 2.984269e-03	ci right 3.197535e-03	k: 3244	n:1050000
Cons ci ratio: 1.323892e-01	ci left: 7.790459e-04	ci right 8.904040e-04	k: 875	n:1050000
KS ci ratio: 5.895603e-03	ci left: 2.954172e-01	ci right 2.971649e-01	k: 311105	n:1050000
KIAA0391   1050000 perm   624 sec   (1683 perm/sec)   p_kst 2.962905e-01   p_cons 8.333333e-04   p_joint 3.089524e-03

Joint ci ratio: 6.855012e-02	ci left: 2.970022e-03	ci right 3.181764e-03	k: 3259	n:1060000
Cons ci ratio: 1.318635e-01	ci left: 7.780819e-04	ci right 8.888259e-04	k: 882	n:1060000
KS ci ratio: 5.866824e-03	ci left: 2.954855e-01	ci right 2.972251e-01	k: 314136	n:1060000
KIAA0391   1060000 perm   634 sec   (1672 perm/sec)   p_kst 2.963547e-01   p_cons 8.320755e-04   p_joint 3.074528e-03

Joint ci ratio: 6.875236e-02	ci left: 2.924811e-03	ci right 3.133969e-03	k: 3240	n:1070000
Cons ci ratio: 1.311230e-01	ci left: 7.798485e-04	ci right 8.901721e-04	k: 892	n:1070000
KS ci ratio: 5.839378e-03	ci left: 2.954872e-01	ci right 2.972186e-01	k: 317097	n:1070000
KIAA0391   1070000 perm   644 sec   (1662 perm/sec)   p_kst 2.963523e-01   p_cons 8.336449e-04   p_joint 3.028037e-03

Joint ci ratio: 6.943349e-02	ci left: 2.840399e-03	ci right 3.045614e-03	k: 3177	n:1080000
Cons ci ratio: 1.304671e-01	ci left: 7.806884e-04	ci right 8.905356e-04	k: 901	n:1080000
KS ci ratio: 5.813101e-03	ci left: 2.954324e-01	ci right 2.971557e-01	k: 319997	n:1080000
KIAA0391   1080000 perm   654 sec   (1652 perm/sec)   p_kst 2.962935e-01   p_cons 8.342593e-04   p_joint 2.941667e-03

Joint ci ratio: 7.048771e-02	ci left: 2.729605e-03	ci right 2.929932e-03	k: 3083	n:1090000
Cons ci ratio: 1.301072e-01	ci left: 7.779637e-04	ci right 8.871023e-04	k: 906	n:1090000
KS ci ratio: 5.786374e-03	ci left: 2.954364e-01	ci right 2.971518e-01	k: 322960	n:1090000
KIAA0391   1090000 perm   664 sec   (1642 perm/sec)   p_kst 2.962936e-01   p_cons 8.311927e-04   p_joint 2.828440e-03

Joint ci ratio: 7.103348e-02	ci left: 2.662816e-03	ci right 2.859817e-03	k: 3036	n:1100000
Cons ci ratio: 1.293252e-01	ci left: 7.805668e-04	ci right 8.893619e-04	k: 917	n:1100000
KS ci ratio: 5.759873e-03	ci left: 2.954504e-01	ci right 2.971579e-01	k: 325934	n:1100000
KIAA0391   1100000 perm   674 sec   (1631 perm/sec)   p_kst 2.963036e-01   p_cons 8.336364e-04   p_joint 2.760000e-03

Joint ci ratio: 7.071984e-02	ci left: 2.662720e-03	ci right 2.858808e-03	k: 3063	n:1110000
Cons ci ratio: 1.287654e-01	ci left: 7.805092e-04	ci right 8.887894e-04	k: 925	n:1110000
KS ci ratio: 5.733882e-03	ci left: 2.954533e-01	ci right 2.971532e-01	k: 328896	n:1110000
KIAA0391   1110000 perm   684 sec   (1622 perm/sec)   p_kst 2.963027e-01   p_cons 8.333333e-04   p_joint 2.759459e-03

Joint ci ratio: 7.131836e-02	ci left: 2.594215e-03	ci right 2.786942e-03	k: 3012	n:1120000
Cons ci ratio: 1.282128e-01	ci left: 7.804537e-04	ci right 8.882261e-04	k: 933	n:1120000
KS ci ratio: 5.708679e-03	ci left: 2.954241e-01	ci right 2.971163e-01	k: 331822	n:1120000
KIAA0391   1120000 perm   695 sec   (1612 perm/sec)   p_kst 2.962696e-01   p_cons 8.330357e-04   p_joint 2.689286e-03

Joint ci ratio: 7.114187e-02	ci left: 2.584295e-03	ci right 2.775790e-03	k: 3027	n:1130000
Cons ci ratio: 1.279393e-01	ci left: 7.769733e-04	ci right 8.840190e-04	k: 937	n:1130000
KS ci ratio: 5.683155e-03	ci left: 2.954431e-01	ci right 2.971278e-01	k: 334802	n:1130000
KIAA0391   1130000 perm   705 sec   (1602 perm/sec)   p_kst 2.962850e-01   p_cons 8.292035e-04   p_joint 2.678761e-03

Joint ci ratio: 7.127263e-02	ci left: 2.552147e-03	ci right 2.741622e-03	k: 3016	n:1140000
Cons ci ratio: 1.273299e-01	ci left: 7.778005e-04	ci right 8.844111e-04	k: 946	n:1140000
KS ci ratio: 5.658113e-03	ci left: 2.954513e-01	ci right 2.971286e-01	k: 337770	n:1140000
KIAA0391   1140000 perm   716 sec   (1592 perm/sec)   p_kst 2.962895e-01   p_cons 8.298246e-04   p_joint 2.645614e-03

Joint ci ratio: 7.127345e-02	ci left: 2.529953e-03	ci right 2.717783e-03	k: 3016	n:1150000
Cons ci ratio: 1.268620e-01	ci left: 7.769304e-04	ci right 8.830010e-04	k: 953	n:1150000
KS ci ratio: 5.633587e-03	ci left: 2.954455e-01	ci right 2.971155e-01	k: 340722	n:1150000
KIAA0391   1150000 perm   727 sec   (1583 perm/sec)   p_kst 2.962800e-01   p_cons 8.286957e-04   p_joint 2.622609e-03

Joint ci ratio: 7.088662e-02	ci left: 2.536086e-03	ci right 2.723307e-03	k: 3049	n:1160000
Cons ci ratio: 1.258109e-01	ci left: 7.835901e-04	ci right 8.896175e-04	k: 969	n:1160000
KS ci ratio: 5.609586e-03	ci left: 2.954243e-01	ci right 2.970870e-01	k: 343656	n:1160000
KIAA0391   1160000 perm   737 sec   (1573 perm/sec)   p_kst 2.962552e-01   p_cons 8.353448e-04   p_joint 2.628448e-03

Joint ci ratio: 7.048310e-02	ci left: 2.543797e-03	ci right 2.730474e-03	k: 3084	n:1170000
Cons ci ratio: 1.253595e-01	ci left: 7.826877e-04	ci right 8.881847e-04	k: 976	n:1170000
KS ci ratio: 5.585912e-03	ci left: 2.954018e-01	ci right 2.970573e-01	k: 346588	n:1170000
KIAA0391   1170000 perm   748 sec   (1564 perm/sec)   p_kst 2.962291e-01   p_cons 8.341880e-04   p_joint 2.635897e-03

Joint ci ratio: 7.059870e-02	ci left: 2.513913e-03	ci right 2.698712e-03	k: 3074	n:1180000
Cons ci ratio: 1.248494e-01	ci left: 7.826222e-04	ci right 8.876494e-04	k: 984	n:1180000
KS ci ratio: 5.561732e-03	ci left: 2.954398e-01	ci right 2.970883e-01	k: 349591	n:1180000
KIAA0391   1180000 perm   759 sec   (1554 perm/sec)   p_kst 2.962636e-01   p_cons 8.338983e-04   p_joint 2.605085e-03

Joint ci ratio: 7.057647e-02	ci left: 2.494437e-03	ci right 2.677745e-03	k: 3076	n:1190000
Cons ci ratio: 1.241579e-01	ci left: 7.850014e-04	ci right 8.897216e-04	k: 995	n:1190000
KS ci ratio: 5.538076e-03	ci left: 2.954612e-01	ci right 2.971028e-01	k: 352575	n:1190000
KIAA0391   1190000 perm   770 sec   (1545 perm/sec)   p_kst 2.962815e-01   p_cons 8.361345e-04   p_joint 2.584874e-03

Joint ci ratio: 7.030288e-02	ci left: 2.493298e-03	ci right 2.675783e-03	k: 3100	n:1200000
Cons ci ratio: 1.233553e-01	ci left: 7.889578e-04	ci right 8.934756e-04	k: 1008	n:1200000
KS ci ratio: 5.514509e-03	ci left: 2.954981e-01	ci right 2.971329e-01	k: 355578	n:1200000
KIAA0391   1200000 perm   781 sec   (1536 perm/sec)   p_kst 2.963150e-01   p_cons 8.400000e-04   p_joint 2.583333e-03

Joint ci ratio: 7.002122e-02	ci left: 2.492991e-03	ci right 2.674692e-03	k: 3125	n:1210000
Cons ci ratio: 1.229902e-01	ci left: 7.872433e-04	ci right 8.912030e-04	k: 1014	n:1210000
KS ci ratio: 5.491350e-03	ci left: 2.955261e-01	ci right 2.971542e-01	k: 358571	n:1210000
KIAA0391   1210000 perm   793 sec   (1527 perm/sec)   p_kst 2.963397e-01   p_cons 8.380165e-04   p_joint 2.582645e-03

Joint ci ratio: 7.151686e-02	ci left: 2.368684e-03	ci right 2.545166e-03	k: 2996	n:1220000
Cons ci ratio: 1.223887e-01	ci left: 7.887357e-04	ci right 8.923462e-04	k: 1024	n:1220000
KS ci ratio: 5.468222e-03	ci left: 2.955733e-01	ci right 2.971948e-01	k: 361588	n:1220000
KIAA0391   1220000 perm   804 sec   (1518 perm/sec)   p_kst 2.963836e-01   p_cons 8.393443e-04   p_joint 2.455738e-03

Joint ci ratio: 7.204971e-02	ci left: 2.314294e-03	ci right 2.488062e-03	k: 2952	n:1230000
Cons ci ratio: 1.219139e-01	ci left: 7.886286e-04	ci right 8.917940e-04	k: 1032	n:1230000
KS ci ratio: 5.446329e-03	ci left: 2.955475e-01	ci right 2.971624e-01	k: 364516	n:1230000
KIAA0391   1230000 perm   815 sec   (1509 perm/sec)   p_kst 2.963545e-01   p_cons 8.390244e-04   p_joint 2.400000e-03

Joint ci ratio: 7.173454e-02	ci left: 2.316222e-03	ci right 2.489342e-03	k: 2978	n:1240000
Cons ci ratio: 1.215030e-01	ci left: 7.877419e-04	ci right 8.904191e-04	k: 1039	n:1240000
KS ci ratio: 5.423480e-03	ci left: 2.956156e-01	ci right 2.972240e-01	k: 367560	n:1240000
KIAA0391   1240000 perm   826 sec   (1501 perm/sec)   p_kst 2.964194e-01   p_cons 8.379032e-04   p_joint 2.401613e-03

Joint ci ratio: 7.142348e-02	ci left: 2.318120e-03	ci right 2.490599e-03	k: 3004	n:1250000
Cons ci ratio: 1.214450e-01	ci left: 7.822156e-04	ci right 8.841202e-04	k: 1040	n:1250000
KS ci ratio: 5.401817e-03	ci left: 2.956131e-01	ci right 2.972150e-01	k: 370517	n:1250000
KIAA0391   1250000 perm   837 sec   (1493 perm/sec)   p_kst 2.964136e-01   p_cons 8.320000e-04   p_joint 2.403200e-03

Joint ci ratio: 7.142416e-02	ci left: 2.299721e-03	ci right 2.470833e-03	k: 3004	n:1260000
Cons ci ratio: 1.209810e-01	ci left: 7.821642e-04	ci right 8.836450e-04	k: 1048	n:1260000
KS ci ratio: 5.380934e-03	ci left: 2.955702e-01	ci right 2.971657e-01	k: 373423	n:1260000
KIAA0391   1260000 perm   848 sec   (1485 perm/sec)   p_kst 2.963675e-01   p_cons 8.317460e-04   p_joint 2.384127e-03

Joint ci ratio: 7.117598e-02	ci left: 2.297853e-03	ci right 2.468208e-03	k: 3025	n:1270000
Cons ci ratio: 1.208087e-01	ci left: 7.782961e-04	ci right 8.791209e-04	k: 1051	n:1270000
KS ci ratio: 5.359765e-03	ci left: 2.955689e-01	ci right 2.971581e-01	k: 376381	n:1270000
KIAA0391   1270000 perm   860 sec   (1477 perm/sec)   p_kst 2.963630e-01   p_cons 8.275591e-04   p_joint 2.381890e-03

Joint ci ratio: 7.104732e-02	ci left: 2.288342e-03	ci right 2.457672e-03	k: 3036	n:1280000
Cons ci ratio: 1.203519e-01	ci left: 7.782771e-04	ci right 8.786912e-04	k: 1059	n:1280000
KS ci ratio: 5.338903e-03	ci left: 2.955629e-01	ci right 2.971458e-01	k: 379333	n:1280000
KIAA0391   1280000 perm   871 sec   (1470 perm/sec)   p_kst 2.963539e-01   p_cons 8.273437e-04   p_joint 2.371875e-03

Joint ci ratio: 7.140234e-02	ci left: 2.247760e-03	ci right 2.414952e-03	k: 3006	n:1290000
Cons ci ratio: 1.193979e-01	ci left: 7.850273e-04	ci right 8.854527e-04	k: 1076	n:1290000
KS ci ratio: 5.317898e-03	ci left: 2.955872e-01	ci right 2.971641e-01	k: 382324	n:1290000
KIAA0391   1290000 perm   883 sec   (1462 perm/sec)   p_kst 2.963752e-01   p_cons 8.341085e-04   p_joint 2.330233e-03

Joint ci ratio: 5.763832e-02	ci left: 3.443176e-03	ci right 3.648276e-03	k: 4608	n:1300000
Cons ci ratio: 1.187381e-01	ci left: 7.879445e-04	ci right 8.881470e-04	k: 1088	n:1300000
KS ci ratio: 5.297120e-03	ci left: 2.956127e-01	ci right 2.971835e-01	k: 385317	n:1300000
KIAA0391   1300000 perm   894 sec   (1454 perm/sec)   p_kst 2.963977e-01   p_cons 8.369231e-04   p_joint 3.544615e-03

Joint ci ratio: 5.798734e-02	ci left: 3.375511e-03	ci right 3.577839e-03	k: 4553	n:1310000
Cons ci ratio: 1.184124e-01	ci left: 7.863740e-04	ci right 8.860832e-04	k: 1094	n:1310000
KS ci ratio: 5.276264e-03	ci left: 2.956631e-01	ci right 2.972279e-01	k: 388343	n:1310000
KIAA0391   1310000 perm   906 sec   (1446 perm/sec)   p_kst 2.964450e-01   p_cons 8.351145e-04   p_joint 3.475573e-03

Joint ci ratio: 4.822663e-02	ci left: 4.860173e-03	ci right 5.101097e-03	k: 6573	n:1320000
Cons ci ratio: 1.183047e-01	ci left: 7.818868e-04	ci right 8.809306e-04	k: 1096	n:1320000
KS ci ratio: 5.298051e-03	ci left: 2.923743e-01	ci right 2.939281e-01	k: 386959	n:1320000
KIAA0391   1320000 perm   917 sec   (1439 perm/sec)   p_kst 2.931508e-01   p_cons 8.303030e-04   p_joint 4.979545e-03

Joint ci ratio: 4.805885e-02	ci left: 4.857801e-03	ci right 5.097746e-03	k: 6619	n:1330000
Cons ci ratio: 1.176627e-01	ci left: 7.847643e-04	ci right 8.835957e-04	k: 1108	n:1330000
KS ci ratio: 5.278398e-03	ci left: 2.923535e-01	ci right 2.939015e-01	k: 389859	n:1330000
KIAA0391   1330000 perm   929 sec   (1431 perm/sec)   p_kst 2.931271e-01   p_cons 8.330827e-04   p_joint 4.976692e-03

Joint ci ratio: 4.792895e-02	ci left: 4.848091e-03	ci right 5.086892e-03	k: 6655	n:1340000
Cons ci ratio: 1.168747e-01	ci left: 7.897736e-04	ci right 8.885238e-04	k: 1123	n:1340000
KS ci ratio: 5.258309e-03	ci left: 2.923846e-01	ci right 2.939268e-01	k: 392828	n:1340000
KIAA0391   1340000 perm   941 sec   (1423 perm/sec)   p_kst 2.931552e-01   p_cons 8.380597e-04   p_joint 4.966418e-03

Joint ci ratio: 4.780011e-02	ci left: 4.838526e-03	ci right 5.076198e-03	k: 6691	n:1350000
Cons ci ratio: 1.164096e-01	ci left: 7.903956e-04	ci right 8.888032e-04	k: 1132	n:1350000
KS ci ratio: 5.239730e-03	ci left: 2.923137e-01	ci right 2.938501e-01	k: 395660	n:1350000
KIAA0391   1350000 perm   954 sec   (1416 perm/sec)   p_kst 2.930815e-01   p_cons 8.385185e-04   p_joint 4.956296e-03

Joint ci ratio: 4.788375e-02	ci left: 4.786237e-03	ci right 5.021762e-03	k: 6668	n:1360000
Cons ci ratio: 1.159499e-01	ci left: 7.910093e-04	ci right 8.890777e-04	k: 1141	n:1360000
KS ci ratio: 5.220818e-03	ci left: 2.922858e-01	ci right 2.938165e-01	k: 398549	n:1360000
KIAA0391   1360000 perm   966 sec   (1408 perm/sec)   p_kst 2.930507e-01   p_cons 8.389706e-04   p_joint 4.902941e-03

Joint ci ratio: 4.772665e-02	ci left: 4.783033e-03	ci right 5.017608e-03	k: 6712	n:1370000
Cons ci ratio: 1.154957e-01	ci left: 7.916147e-04	ci right 8.893475e-04	k: 1150	n:1370000
KS ci ratio: 5.201853e-03	ci left: 2.922788e-01	ci right 2.938038e-01	k: 401466	n:1370000
KIAA0391   1370000 perm   978 sec   (1401 perm/sec)   p_kst 2.930409e-01   p_cons 8.394161e-04   p_joint 4.899270e-03

Joint ci ratio: 4.793604e-02	ci left: 4.706843e-03	ci right 4.938721e-03	k: 6654	n:1380000
Cons ci ratio: 1.147994e-01	ci left: 7.957312e-04	ci right 8.933398e-04	k: 1164	n:1380000
KS ci ratio: 5.182431e-03	ci left: 2.923247e-01	ci right 2.938443e-01	k: 404456	n:1380000
KIAA0391   1380000 perm   990 sec   (1394 perm/sec)   p_kst 2.930841e-01   p_cons 8.434783e-04   p_joint 4.821739e-03

Joint ci ratio: 4.778201e-02	ci left: 4.703546e-03	ci right 4.934496e-03	k: 6697	n:1390000
Cons ci ratio: 1.143098e-01	ci left: 7.969946e-04	ci right 8.943132e-04	k: 1174	n:1390000
KS ci ratio: 5.163691e-03	ci left: 2.923326e-01	ci right 2.938467e-01	k: 407394	n:1390000
KIAA0391   1390000 perm   1003 sec   (1386 perm/sec)   p_kst 2.930892e-01   p_cons 8.446043e-04   p_joint 4.817986e-03

Joint ci ratio: 4.854613e-02	ci left: 4.523156e-03	ci right 4.748901e-03	k: 6489	n:1400000
Cons ci ratio: 1.140191e-01	ci left: 7.954651e-04	ci right 8.923333e-04	k: 1180	n:1400000
KS ci ratio: 5.145118e-03	ci left: 2.923432e-01	ci right 2.938519e-01	k: 410336	n:1400000
KIAA0391   1400000 perm   1015 sec   (1379 perm/sec)   p_kst 2.930971e-01   p_cons 8.428571e-04   p_joint 4.635000e-03

Joint ci ratio: 4.840850e-02	ci left: 4.517000e-03	ci right 4.741780e-03	k: 6526	n:1410000
Cons ci ratio: 1.135871e-01	ci left: 7.960248e-04	ci right 8.925693e-04	k: 1189	n:1410000
KS ci ratio: 5.127060e-03	ci left: 2.923282e-01	ci right 2.938315e-01	k: 413242	n:1410000
KIAA0391   1410000 perm   1028 sec   (1372 perm/sec)   p_kst 2.930794e-01   p_cons 8.432624e-04   p_joint 4.628369e-03

Joint ci ratio: 4.824250e-02	ci left: 4.516497e-03	ci right 4.740460e-03	k: 6571	n:1420000
Cons ci ratio: 1.133019e-01	ci left: 7.945244e-04	ci right 8.906288e-04	k: 1195	n:1420000
KS ci ratio: 5.108296e-03	ci left: 2.923859e-01	ci right 2.938840e-01	k: 416251	n:1420000
KIAA0391   1420000 perm   1040 sec   (1365 perm/sec)   p_kst 2.931345e-01   p_cons 8.415493e-04   p_joint 4.627465e-03

Joint ci ratio: 4.809646e-02	ci left: 4.512548e-03	ci right 4.735619e-03	k: 6611	n:1430000
Cons ci ratio: 1.126910e-01	ci left: 7.978023e-04	ci right 8.937483e-04	k: 1208	n:1430000
KS ci ratio: 5.090355e-03	ci left: 2.923925e-01	ci right 2.938853e-01	k: 419188	n:1430000
KIAA0391   1430000 perm   1053 sec   (1359 perm/sec)   p_kst 2.931385e-01   p_cons 8.447552e-04   p_joint 4.623077e-03

Joint ci ratio: 4.794088e-02	ci left: 4.510714e-03	ci right 4.732953e-03	k: 6654	n:1440000
Cons ci ratio: 1.125052e-01	ci left: 7.949615e-04	ci right 8.903978e-04	k: 1212	n:1440000
KS ci ratio: 5.072610e-03	ci left: 2.923983e-01	ci right 2.938859e-01	k: 422124	n:1440000
KIAA0391   1440000 perm   1065 sec   (1352 perm/sec)   p_kst 2.931417e-01   p_cons 8.416667e-04   p_joint 4.620833e-03

Joint ci ratio: 4.819328e-02	ci left: 4.432587e-03	ci right 4.652158e-03	k: 6585	n:1450000
Cons ci ratio: 1.120442e-01	ci left: 7.961820e-04	ci right 8.913472e-04	k: 1222	n:1450000
KS ci ratio: 5.054276e-03	ci left: 2.924674e-01	ci right 2.939500e-01	k: 425152	n:1450000
KIAA0391   1450000 perm   1078 sec   (1345 perm/sec)   p_kst 2.932083e-01   p_cons 8.427586e-04   p_joint 4.541379e-03

Joint ci ratio: 4.804769e-02	ci left: 4.429294e-03	ci right 4.648021e-03	k: 6625	n:1460000
Cons ci ratio: 1.114082e-01	ci left: 8.000498e-04	ci right 8.950989e-04	k: 1236	n:1460000
KS ci ratio: 5.037162e-03	ci left: 2.924514e-01	ci right 2.939289e-01	k: 428057	n:1460000
KIAA0391   1460000 perm   1091 sec   (1339 perm/sec)   p_kst 2.931897e-01   p_cons 8.465753e-04   p_joint 4.537671e-03

Joint ci ratio: 4.796850e-02	ci left: 4.413948e-03	ci right 4.631548e-03	k: 6647	n:1470000
Cons ci ratio: 1.111838e-01	ci left: 7.979139e-04	ci right 8.925059e-04	k: 1241	n:1470000
KS ci ratio: 5.019398e-03	ci left: 2.925036e-01	ci right 2.939761e-01	k: 431062	n:1470000
KIAA0391   1470000 perm   1104 sec   (1332 perm/sec)   p_kst 2.932395e-01   p_cons 8.442177e-04   p_joint 4.521769e-03

Joint ci ratio: 4.815880e-02	ci left: 4.349408e-03	ci right 4.564701e-03	k: 6595	n:1480000
Cons ci ratio: 1.109608e-01	ci left: 7.958071e-04	ci right 8.899477e-04	k: 1246	n:1480000
KS ci ratio: 5.002423e-03	ci left: 2.925051e-01	ci right 2.939727e-01	k: 433993	n:1480000
KIAA0391   1480000 perm   1116 sec   (1326 perm/sec)   p_kst 2.932385e-01   p_cons 8.418919e-04   p_joint 4.456081e-03

Joint ci ratio: 4.866984e-02	ci left: 4.229378e-03	ci right 4.441013e-03	k: 6458	n:1490000
Cons ci ratio: 1.106066e-01	ci left: 7.956865e-04	ci right 8.894927e-04	k: 1254	n:1490000
KS ci ratio: 4.985224e-03	ci left: 2.925395e-01	ci right 2.940022e-01	k: 436973	n:1490000
KIAA0391   1490000 perm   1130 sec   (1319 perm/sec)   p_kst 2.932705e-01   p_cons 8.416107e-04   p_joint 4.334228e-03

Joint ci ratio: 4.846375e-02	ci left: 4.237404e-03	ci right 4.448517e-03	k: 6513	n:1500000
Cons ci ratio: 1.102121e-01	ci left: 7.962162e-04	ci right 8.897284e-04	k: 1263	n:1500000
KS ci ratio: 4.967897e-03	ci left: 2.925988e-01	ci right 2.940567e-01	k: 439991	n:1500000
KIAA0391   1500000 perm   1143 sec   (1313 perm/sec)   p_kst 2.933273e-01   p_cons 8.420000e-04   p_joint 4.342000e-03

Joint ci ratio: 4.831198e-02	ci left: 4.236165e-03	ci right 4.446538e-03	k: 6554	n:1510000
Cons ci ratio: 1.098650e-01	ci left: 7.960954e-04	ci right 8.892799e-04	k: 1271	n:1510000
KS ci ratio: 4.951533e-03	ci left: 2.925918e-01	ci right 2.940448e-01	k: 442910	n:1510000
KIAA0391   1510000 perm   1156 sec   (1306 perm/sec)   p_kst 2.933179e-01   p_cons 8.417219e-04   p_joint 4.340397e-03

Joint ci ratio: 4.813233e-02	ci left: 4.240144e-03	ci right 4.449909e-03	k: 6603	n:1520000
Cons ci ratio: 1.093077e-01	ci left: 7.991763e-04	ci right 8.922163e-04	k: 1284	n:1520000
KS ci ratio: 4.934843e-03	ci left: 2.926256e-01	ci right 2.940739e-01	k: 445891	n:1520000
KIAA0391   1520000 perm   1169 sec   (1300 perm/sec)   p_kst 2.933493e-01   p_cons 8.447368e-04   p_joint 4.344079e-03

Joint ci ratio: 4.691426e-02	ci left: 4.435898e-03	ci right 4.649644e-03	k: 6949	n:1530000
Cons ci ratio: 1.090535e-01	ci left: 7.977673e-04	ci right 8.904134e-04	k: 1290	n:1530000
KS ci ratio: 4.917492e-03	ci left: 2.927289e-01	ci right 2.941726e-01	k: 448979	n:1530000
KIAA0391   1530000 perm   1183 sec   (1293 perm/sec)   p_kst 2.934503e-01   p_cons 8.431373e-04   p_joint 4.541830e-03

Joint ci ratio: 4.744241e-02	ci left: 4.308908e-03	ci right 4.518937e-03	k: 6796	n:1540000
Cons ci ratio: 1.086335e-01	ci left: 7.989038e-04	ci right 8.913017e-04	k: 1300	n:1540000
KS ci ratio: 4.901036e-03	ci left: 2.927705e-01	ci right 2.942095e-01	k: 451974	n:1540000
KIAA0391   1540000 perm   1196 sec   (1287 perm/sec)   p_kst 2.934896e-01   p_cons 8.441558e-04   p_joint 4.412987e-03

Joint ci ratio: 4.735570e-02	ci left: 4.297046e-03	ci right 4.506103e-03	k: 6821	n:1550000
Cons ci ratio: 1.082183e-01	ci left: 8.000262e-04	ci right 8.921779e-04	k: 1310	n:1550000
KS ci ratio: 4.885117e-03	ci left: 2.927800e-01	ci right 2.942144e-01	k: 454920	n:1550000
KIAA0391   1550000 perm   1210 sec   (1281 perm/sec)   p_kst 2.934968e-01   p_cons 8.451613e-04   p_joint 4.400645e-03

Joint ci ratio: 4.717267e-02	ci left: 4.303074e-03	ci right 4.511593e-03	k: 6874	n:1560000
Cons ci ratio: 1.078897e-01	ci left: 7.998875e-04	ci right 8.917255e-04	k: 1318	n:1560000
KS ci ratio: 4.869215e-03	ci left: 2.928009e-01	ci right 2.942307e-01	k: 457884	n:1560000
KIAA0391   1560000 perm   1223 sec   (1275 perm/sec)   p_kst 2.935154e-01   p_cons 8.448718e-04   p_joint 4.406410e-03

Joint ci ratio: 4.702244e-02	ci left: 4.303361e-03	ci right 4.511212e-03	k: 6918	n:1570000
Cons ci ratio: 1.076452e-01	ci left: 7.985113e-04	ci right 8.899704e-04	k: 1324	n:1570000
KS ci ratio: 4.853521e-03	ci left: 2.928170e-01	ci right 2.942423e-01	k: 460841	n:1570000
KIAA0391   1570000 perm   1237 sec   (1269 perm/sec)   p_kst 2.935293e-01   p_cons 8.433121e-04   p_joint 4.406369e-03

Joint ci ratio: 4.707096e-02	ci left: 4.267366e-03	ci right 4.473697e-03	k: 6904	n:1580000
Cons ci ratio: 1.074428e-01	ci left: 7.965368e-04	ci right 8.875874e-04	k: 1329	n:1580000
KS ci ratio: 4.838354e-03	ci left: 2.928008e-01	ci right 2.942215e-01	k: 463747	n:1580000
KIAA0391   1580000 perm   1251 sec   (1263 perm/sec)   p_kst 2.935108e-01   p_cons 8.411392e-04   p_joint 4.369620e-03

Joint ci ratio: 4.869922e-02	ci left: 3.959638e-03	ci right 4.157898e-03	k: 6452	n:1590000
Cons ci ratio: 1.070011e-01	ci left: 7.982599e-04	ci right 8.891087e-04	k: 1340	n:1590000
KS ci ratio: 4.822896e-03	ci left: 2.928218e-01	ci right 2.942381e-01	k: 466712	n:1590000
KIAA0391   1590000 perm   1265 sec   (1257 perm/sec)   p_kst 2.935296e-01   p_cons 8.427673e-04   p_joint 4.057862e-03

Joint ci ratio: 4.894413e-02	ci left: 3.895376e-03	ci right 4.091427e-03	k: 6388	n:1600000
Cons ci ratio: 1.068420e-01	ci left: 7.957038e-04	ci right 8.861187e-04	k: 1344	n:1600000
KS ci ratio: 4.808100e-03	ci left: 2.927982e-01	ci right 2.942100e-01	k: 469606	n:1600000
KIAA0391   1600000 perm   1279 sec   (1251 perm/sec)   p_kst 2.935038e-01   p_cons 8.400000e-04   p_joint 3.992500e-03

Joint ci ratio: 4.881451e-02	ci left: 3.892040e-03	ci right 4.087390e-03	k: 6422	n:1610000
Cons ci ratio: 1.065651e-01	ci left: 7.949934e-04	ci right 8.850787e-04	k: 1351	n:1610000
KS ci ratio: 4.793425e-03	ci left: 2.927762e-01	ci right 2.941836e-01	k: 472502	n:1610000
KIAA0391   1610000 perm   1293 sec   (1245 perm/sec)   p_kst 2.934795e-01   p_cons 8.391304e-04   p_joint 3.988820e-03

Joint ci ratio: 4.865188e-02	ci left: 3.894235e-03	ci right 4.089026e-03	k: 6465	n:1620000
Cons ci ratio: 1.063687e-01	ci left: 7.930902e-04	ci right 8.827839e-04	k: 1356	n:1620000
KS ci ratio: 4.778429e-03	ci left: 2.927939e-01	ci right 2.941969e-01	k: 475462	n:1620000
KIAA0391   1620000 perm   1308 sec   (1239 perm/sec)   p_kst 2.934951e-01   p_cons 8.370370e-04   p_joint 3.990741e-03

Joint ci ratio: 4.589107e-02	ci left: 4.354156e-03	ci right 4.559267e-03	k: 7263	n:1630000
Cons ci ratio: 1.058241e-01	ci left: 7.965857e-04	ci right 8.861847e-04	k: 1370	n:1630000
KS ci ratio: 4.764185e-03	ci left: 2.927581e-01	ci right 2.941568e-01	k: 478335	n:1630000
KIAA0391   1630000 perm   1322 sec   (1233 perm/sec)   p_kst 2.934571e-01   p_cons 8.404908e-04   p_joint 4.455828e-03

Joint ci ratio: 4.577159e-02	ci left: 4.350511e-03	ci right 4.554903e-03	k: 7301	n:1640000
Cons ci ratio: 1.054402e-01	ci left: 7.976650e-04	ci right 8.870397e-04	k: 1380	n:1640000
KS ci ratio: 4.749593e-03	ci left: 2.927641e-01	ci right 2.941585e-01	k: 481276	n:1640000
KIAA0391   1640000 perm   1336 sec   (1227 perm/sec)   p_kst 2.934610e-01   p_cons 8.414634e-04   p_joint 4.451829e-03

Joint ci ratio: 4.376454e-02	ci left: 4.732873e-03	ci right 4.945234e-03	k: 7983	n:1650000
Cons ci ratio: 1.050604e-01	ci left: 7.987317e-04	ci right 8.878838e-04	k: 1390	n:1650000
KS ci ratio: 4.734684e-03	ci left: 2.928095e-01	ci right 2.941997e-01	k: 484282	n:1650000
KIAA0391   1650000 perm   1351 sec   (1222 perm/sec)   p_kst 2.935042e-01   p_cons 8.424242e-04   p_joint 4.838182e-03

Joint ci ratio: 4.242190e-02	ci left: 5.008892e-03	ci right 5.226575e-03	k: 8494	n:1660000
Cons ci ratio: 1.046101e-01	ci left: 8.009595e-04	ci right 8.899534e-04	k: 1402	n:1660000
KS ci ratio: 4.720827e-03	ci left: 2.927742e-01	ci right 2.941602e-01	k: 487155	n:1660000
KIAA0391   1660000 perm   1365 sec   (1216 perm/sec)   p_kst 2.934669e-01   p_cons 8.445783e-04   p_joint 5.116867e-03

Joint ci ratio: 4.232252e-02	ci left: 5.002597e-03	ci right 5.219484e-03	k: 8534	n:1670000
Cons ci ratio: 1.043872e-01	ci left: 7.996622e-04	ci right 8.883111e-04	k: 1408	n:1670000
KS ci ratio: 4.706839e-03	ci left: 2.927616e-01	ci right 2.941434e-01	k: 490065	n:1670000
KIAA0391   1670000 perm   1380 sec   (1210 perm/sec)   p_kst 2.934521e-01   p_cons 8.431138e-04   p_joint 5.110180e-03

Joint ci ratio: 4.215964e-02	ci left: 5.011691e-03	ci right 5.228116e-03	k: 8600	n:1680000
Cons ci ratio: 1.039820e-01	ci left: 8.012794e-04	ci right 8.897416e-04	k: 1419	n:1680000
KS ci ratio: 4.692820e-03	ci left: 2.927627e-01	ci right 2.941404e-01	k: 492998	n:1680000
KIAA0391   1680000 perm   1394 sec   (1205 perm/sec)   p_kst 2.934512e-01   p_cons 8.446429e-04   p_joint 5.119048e-03

Joint ci ratio: 4.203276e-02	ci left: 5.012481e-03	ci right 5.228273e-03	k: 8652	n:1690000
Cons ci ratio: 1.036177e-01	ci left: 8.023017e-04	ci right 8.905476e-04	k: 1429	n:1690000
KS ci ratio: 4.679086e-03	ci left: 2.927497e-01	ci right 2.941232e-01	k: 495907	n:1690000
KIAA0391   1690000 perm   1409 sec   (1199 perm/sec)   p_kst 2.934361e-01   p_cons 8.455621e-04   p_joint 5.119527e-03

Joint ci ratio: 4.190944e-02	ci left: 5.012681e-03	ci right 5.227833e-03	k: 8703	n:1700000
Cons ci ratio: 1.032932e-01	ci left: 8.027394e-04	ci right 8.907401e-04	k: 1438	n:1700000
KS ci ratio: 4.665108e-03	ci left: 2.927691e-01	ci right 2.941387e-01	k: 498871	n:1700000
KIAA0391   1700000 perm   1424 sec   (1194 perm/sec)   p_kst 2.934535e-01   p_cons 8.458824e-04   p_joint 5.119412e-03

Joint ci ratio: 4.179200e-02	ci left: 5.011722e-03	ci right 5.226216e-03	k: 8752	n:1710000
Cons ci ratio: 1.028296e-01	ci left: 8.054514e-04	ci right 8.933293e-04	k: 1451	n:1710000
KS ci ratio: 4.651765e-03	ci left: 2.927427e-01	ci right 2.941082e-01	k: 501757	n:1710000
KIAA0391   1710000 perm   1439 sec   (1188 perm/sec)   p_kst 2.934251e-01   p_cons 8.485380e-04   p_joint 5.118129e-03

Joint ci ratio: 4.067500e-02	ci left: 5.261668e-03	ci right 5.480700e-03	k: 9237	n:1720000
Cons ci ratio: 1.025827e-01	ci left: 8.047338e-04	ci right 8.923098e-04	k: 1458	n:1720000
KS ci ratio: 4.638465e-03	ci left: 2.927231e-01	ci right 2.940846e-01	k: 504654	n:1720000
KIAA0391   1720000 perm   1454 sec   (1183 perm/sec)   p_kst 2.934035e-01   p_cons 8.476744e-04   p_joint 5.370349e-03

Joint ci ratio: 3.964668e-02	ci left: 5.507655e-03	ci right 5.730999e-03	k: 9720	n:1730000
Cons ci ratio: 1.020246e-01	ci left: 8.090942e-04	ci right 8.966369e-04	k: 1474	n:1730000
KS ci ratio: 4.624976e-03	ci left: 2.927308e-01	ci right 2.940884e-01	k: 507598	n:1730000
KIAA0391   1730000 perm   1469 sec   (1178 perm/sec)   p_kst 2.934092e-01   p_cons 8.520231e-04   p_joint 5.618497e-03

Joint ci ratio: 3.952079e-02	ci left: 5.511282e-03	ci right 5.734047e-03	k: 9782	n:1740000
Cons ci ratio: 1.017490e-01	ci left: 8.089247e-04	ci right 8.961986e-04	k: 1482	n:1740000
KS ci ratio: 4.611744e-03	ci left: 2.927258e-01	ci right 2.940795e-01	k: 510520	n:1740000
KIAA0391   1740000 perm   1484 sec   (1172 perm/sec)   p_kst 2.934023e-01   p_cons 8.517241e-04   p_joint 5.621839e-03

Joint ci ratio: 3.946467e-02	ci left: 5.495630e-03	ci right 5.717440e-03	k: 9810	n:1750000
Cons ci ratio: 1.015098e-01	ci left: 8.082006e-04	ci right 8.951792e-04	k: 1489	n:1750000
KS ci ratio: 4.598397e-03	ci left: 2.927414e-01	ci right 2.940912e-01	k: 513478	n:1750000
KIAA0391   1750000 perm   1500 sec   (1167 perm/sec)   p_kst 2.934160e-01   p_cons 8.508571e-04   p_joint 5.605714e-03

Joint ci ratio: 3.934450e-02	ci left: 5.498160e-03	ci right 5.719381e-03	k: 9870	n:1760000
Cons ci ratio: 1.012384e-01	ci left: 8.080388e-04	ci right 8.947536e-04	k: 1497	n:1760000
KS ci ratio: 4.585064e-03	ci left: 2.927660e-01	ci right 2.941120e-01	k: 516452	n:1760000
KIAA0391   1760000 perm   1515 sec   (1162 perm/sec)   p_kst 2.934386e-01   p_cons 8.505682e-04   p_joint 5.607955e-03

Joint ci ratio: 3.922145e-02	ci left: 5.501781e-03	ci right 5.722440e-03	k: 9932	n:1770000
Cons ci ratio: 1.007684e-01	ci left: 8.111835e-04	ci right 8.978077e-04	k: 1511	n:1770000
KS ci ratio: 4.571791e-03	ci left: 2.927953e-01	ci right 2.941375e-01	k: 519435	n:1770000
KIAA0391   1770000 perm   1531 sec   (1156 perm/sec)   p_kst 2.934661e-01   p_cons 8.536723e-04   p_joint 5.611299e-03

Joint ci ratio: 3.989193e-02	ci left: 5.287857e-03	ci right 5.503645e-03	k: 9603	n:1780000
Cons ci ratio: 1.005692e-01	ci left: 8.099122e-04	ci right 8.962195e-04	k: 1517	n:1780000
KS ci ratio: 4.559089e-03	ci left: 2.927828e-01	ci right 2.941212e-01	k: 522344	n:1780000
KIAA0391   1780000 perm   1546 sec   (1151 perm/sec)   p_kst 2.934517e-01   p_cons 8.522472e-04   p_joint 5.394944e-03

Joint ci ratio: 3.979683e-02	ci left: 5.283758e-03	ci right 5.498852e-03	k: 9649	n:1790000
Cons ci ratio: 1.003711e-01	ci left: 8.086552e-04	ci right 8.946489e-04	k: 1523	n:1790000
KS ci ratio: 4.546052e-03	ci left: 2.928106e-01	ci right 2.941453e-01	k: 525325	n:1790000
KIAA0391   1790000 perm   1562 sec   (1146 perm/sec)   p_kst 2.934777e-01   p_cons 8.508380e-04   p_joint 5.390503e-03

Joint ci ratio: 3.970034e-02	ci left: 5.280255e-03	ci right 5.494674e-03	k: 9696	n:1800000
Cons ci ratio: 1.000433e-01	ci left: 8.095790e-04	ci right 8.953734e-04	k: 1533	n:1800000
KS ci ratio: 4.533375e-03	ci left: 2.928154e-01	ci right 2.941464e-01	k: 528265	n:1800000
KIAA0391   1800000 perm   1577 sec   (1141 perm/sec)   p_kst 2.934806e-01   p_cons 8.516667e-04   p_joint 5.386667e-03

Joint ci ratio: 3.956579e-02	ci left: 5.287186e-03	ci right 5.501142e-03	k: 9762	n:1810000
Cons ci ratio: 9.978349e-02	ci left: 8.094157e-04	ci right 8.949568e-04	k: 1541	n:1810000
KS ci ratio: 4.520719e-03	ci left: 2.928278e-01	ci right 2.941552e-01	k: 531219	n:1810000
KIAA0391   1810000 perm   1593 sec   (1136 perm/sec)   p_kst 2.934912e-01   p_cons 8.513812e-04   p_joint 5.393370e-03

Outputting figure to mutsig2_images.part000000000090/KIAA0391.4_1780_1810000_0.29349_0.00085138_0.0053934.png
                gene_name: KIAA0391
               theta_stop: 0.100 
                    nperm: 1810000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.00085 
      ci_cons_bounds_left: 0.00081 
     ci_cons_bounds_right: 0.00089 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0053 
    ci_joint_bounds_right: 0.0055 

Current progress: 57 percent done.
KIAA0586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
Cons ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
KIAA0586   10000 perm   2 sec   (5028 perm/sec)   p_kst 1.786000e-01   p_cons 1.348000e-01   p_joint 1.983000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0586.4_4539_10000_0.1786_0.1348_0.1983.png
                gene_name: KIAA0586
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 58 percent done.
KIAA1033
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
Cons ci ratio: 1.280331e-01	ci left: 8.018782e-02	ci right 9.125491e-02	k: 856	n:10000
KS ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
KIAA1033   10000 perm   2 sec   (5064 perm/sec)   p_kst 4.175000e-01   p_cons 8.560000e-02   p_joint 3.037000e-01

Joint ci ratio: 4.387124e-02	ci left: 2.789988e-01	ci right 2.915637e-01	k: 5705	n:20000
Cons ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
KS ci ratio: 3.317245e-02	ci left: 4.042692e-01	ci right 4.179566e-01	k: 8222	n:20000
KIAA1033   20000 perm   4 sec   (4578 perm/sec)   p_kst 4.111000e-01   p_cons 8.665000e-02   p_joint 2.852500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1033.4_3654_20000_0.4111_0.08665_0.28525.png
                gene_name: KIAA1033
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 59 percent done.
KIAA1199
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
KIAA1199   10000 perm   2 sec   (4918 perm/sec)   p_kst 6.132000e-01   p_cons 2.851000e-01   p_joint 5.526000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1199.4_4198_10000_0.6132_0.2851_0.5526.png
                gene_name: KIAA1199
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 61 percent done.
KIAA1217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
Cons ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
KS ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
KIAA1217   10000 perm   2 sec   (4461 perm/sec)   p_kst 5.557000e-01   p_cons 1.726000e-01   p_joint 4.661000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1217.4_5916_10000_0.5557_0.1726_0.4661.png
                gene_name: KIAA1217
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
KIAA1370
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
Cons ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
KS ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
KIAA1370   10000 perm   2 sec   (5209 perm/sec)   p_kst 7.862000e-01   p_cons 1.403000e-01   p_joint 4.523000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1370.4_3279_10000_0.7862_0.1403_0.4523.png
                gene_name: KIAA1370
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
KIAA1383
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
KS ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
KIAA1383   10000 perm   2 sec   (5141 perm/sec)   p_kst 8.774000e-01   p_cons 7.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1383.4_3148_10000_0.8774_0.7639_1.png
                gene_name: KIAA1383
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KIAA1522
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KIAA1522   10000 perm   2 sec   (5085 perm/sec)   p_kst 8.175000e-01   p_cons 7.733000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1522.4_3313_10000_0.8175_0.7733_1.png
                gene_name: KIAA1522
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KIAA0182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
KS ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
KIAA0182   10000 perm   2 sec   (5319 perm/sec)   p_kst 1.853000e-01   p_cons 7.044000e-01   p_joint 2.639000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0182.3_3718_10000_0.1853_0.7044_0.2639.png
                gene_name: KIAA0182
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 67 percent done.
KIAA0195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
Cons ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
KS ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
KIAA0195   10000 perm   2 sec   (5455 perm/sec)   p_kst 3.735000e-01   p_cons 2.201000e-01   p_joint 4.362000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0195.3_4195_10000_0.3735_0.2201_0.4362.png
                gene_name: KIAA0195
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 68 percent done.
KIAA0226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KIAA0226   10000 perm   2 sec   (5539 perm/sec)   p_kst 8.438000e-01   p_cons 8.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0226.3_3048_10000_0.8438_0.8933_1.png
                gene_name: KIAA0226
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
KIAA0415
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 2.000918e-03	ci left: 9.963117e-01	ci right 9.983815e-01	k: 9975	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
KIAA0415   10000 perm   2 sec   (5620 perm/sec)   p_kst 3.500000e-03   p_cons 9.975000e-01   p_joint 4.820000e-02

Joint ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
Cons ci ratio: 1.415040e-03	ci left: 9.966486e-01	ci right 9.981008e-01	k: 19949	n:20000
KS ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
KIAA0415   20000 perm   4 sec   (5044 perm/sec)   p_kst 3.600000e-03   p_cons 9.974500e-01   p_joint 4.630000e-02

Joint ci ratio: 1.007531e-01	ci left: 4.560825e-02	ci right 5.047975e-02	k: 1440	n:30000
Cons ci ratio: 1.220447e-03	ci left: 9.964609e-01	ci right 9.977064e-01	k: 29914	n:30000
KS ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
KIAA0415   30000 perm   6 sec   (4794 perm/sec)   p_kst 3.266667e-03   p_cons 9.971333e-01   p_joint 4.800000e-02

Joint ci ratio: 1.028774e-01	ci left: 3.322031e-02	ci right 3.684759e-02	k: 1400	n:40000
Cons ci ratio: 9.811659e-04	ci left: 9.969876e-01	ci right 9.979880e-01	k: 39901	n:40000
KS ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
KIAA0415   40000 perm   9 sec   (4650 perm/sec)   p_kst 3.075000e-03   p_cons 9.975250e-01   p_joint 3.500000e-02

Joint ci ratio: 1.055192e-01	ci left: 2.544092e-02	ci right 2.829436e-02	k: 1342	n:50000
Cons ci ratio: 8.880878e-04	ci left: 9.969786e-01	ci right 9.978821e-01	k: 49873	n:50000
KS ci ratio: 3.174672e-01	ci left: 2.558091e-03	ci right 3.541012e-03	k: 151	n:50000
KIAA0415   50000 perm   11 sec   (4556 perm/sec)   p_kst 3.020000e-03   p_cons 9.974600e-01   p_joint 2.684000e-02

Joint ci ratio: 8.922497e-02	ci left: 2.977433e-02	ci right 3.257126e-02	k: 1869	n:60000
Cons ci ratio: 8.011353e-04	ci left: 9.970850e-01	ci right 9.978990e-01	k: 59851	n:60000
KS ci ratio: 2.846862e-01	ci left: 2.701989e-03	ci right 3.613785e-03	k: 188	n:60000
KIAA0415   60000 perm   13 sec   (4469 perm/sec)   p_kst 3.133333e-03   p_cons 9.975167e-01   p_joint 3.115000e-02

Joint ci ratio: 7.763314e-02	ci left: 3.377688e-02	ci right 3.651897e-02	k: 2459	n:70000
Cons ci ratio: 7.729288e-04	ci left: 9.968871e-01	ci right 9.976708e-01	k: 69811	n:70000
KS ci ratio: 2.650803e-01	ci left: 2.701754e-03	ci right 3.540272e-03	k: 217	n:70000
KIAA0415   70000 perm   16 sec   (4387 perm/sec)   p_kst 3.100000e-03   p_cons 9.973000e-01   p_joint 3.512857e-02

Joint ci ratio: 9.078343e-02	ci left: 2.174008e-02	ci right 2.381973e-02	k: 1821	n:80000
Cons ci ratio: 7.425449e-04	ci left: 9.967557e-01	ci right 9.975075e-01	k: 79772	n:80000
KS ci ratio: 2.455704e-01	ci left: 2.785291e-03	ci right 3.576418e-03	k: 253	n:80000
KIAA0415   80000 perm   19 sec   (4307 perm/sec)   p_kst 3.162500e-03   p_cons 9.971500e-01   p_joint 2.276250e-02

Joint ci ratio: 6.350027e-02	ci left: 3.933081e-02	ci right 4.192113e-02	k: 3655	n:90000
Cons ci ratio: 7.073671e-04	ci left: 9.967148e-01	ci right 9.974303e-01	k: 89738	n:90000
KS ci ratio: 2.294214e-01	ci left: 2.862500e-03	ci right 3.614526e-03	k: 290	n:90000
KIAA0415   90000 perm   21 sec   (4235 perm/sec)   p_kst 3.222222e-03   p_cons 9.970889e-01   p_joint 4.061111e-02

Joint ci ratio: 6.739901e-02	ci left: 3.161610e-02	ci right 3.383111e-02	k: 3271	n:100000
Cons ci ratio: 6.638656e-04	ci left: 9.967997e-01	ci right 9.974709e-01	k: 99715	n:100000
KS ci ratio: 2.160895e-01	ci left: 2.925632e-03	ci right 3.643657e-03	k: 327	n:100000
KIAA0415   100000 perm   24 sec   (4164 perm/sec)   p_kst 3.270000e-03   p_cons 9.971500e-01   p_joint 3.271000e-02

Joint ci ratio: 7.044139e-02	ci left: 2.641642e-02	ci right 2.835406e-02	k: 3011	n:110000
Cons ci ratio: 6.323668e-04	ci left: 9.968217e-01	ci right 9.974607e-01	k: 109687	n:110000
KS ci ratio: 2.077151e-01	ci left: 2.892092e-03	ci right 3.570881e-03	k: 354	n:110000
KIAA0415   110000 perm   27 sec   (4089 perm/sec)   p_kst 3.218182e-03   p_cons 9.971545e-01   p_joint 2.737273e-02

Joint ci ratio: 6.198013e-02	ci left: 3.125760e-02	ci right 3.326509e-02	k: 3870	n:120000
Cons ci ratio: 6.049627e-04	ci left: 9.968406e-01	ci right 9.974516e-01	k: 119659	n:120000
KS ci ratio: 1.974130e-01	ci left: 2.951706e-03	ci right 3.605996e-03	k: 392	n:120000
KIAA0415   120000 perm   30 sec   (4025 perm/sec)   p_kst 3.266667e-03   p_cons 9.971583e-01   p_joint 3.225000e-02

Joint ci ratio: 6.302254e-02	ci left: 2.798844e-02	ci right 2.981727e-02	k: 3756	n:130000
Cons ci ratio: 5.792604e-04	ci left: 9.968733e-01	ci right 9.974580e-01	k: 129633	n:130000
KS ci ratio: 1.896125e-01	ci left: 2.966205e-03	ci right 3.594735e-03	k: 425	n:130000
KIAA0415   130000 perm   33 sec   (3963 perm/sec)   p_kst 3.269231e-03   p_cons 9.971769e-01   p_joint 2.889231e-02

Joint ci ratio: 5.867129e-02	ci left: 2.999265e-02	ci right 3.181256e-02	k: 4325	n:140000
Cons ci ratio: 5.572657e-04	ci left: 9.968941e-01	ci right 9.974564e-01	k: 139606	n:140000
KS ci ratio: 1.828691e-01	ci left: 2.972251e-03	ci right 3.577182e-03	k: 457	n:140000
KIAA0415   140000 perm   36 sec   (3900 perm/sec)   p_kst 3.264286e-03   p_cons 9.971857e-01   p_joint 3.089286e-02

Joint ci ratio: 6.807640e-02	ci left: 2.088991e-02	ci right 2.236866e-02	k: 3243	n:150000
Cons ci ratio: 5.331056e-04	ci left: 9.969613e-01	ci right 9.974992e-01	k: 149586	n:150000
KS ci ratio: 1.780782e-01	ci left: 2.933234e-03	ci right 3.512898e-03	k: 482	n:150000
KIAA0415   150000 perm   39 sec   (3844 perm/sec)   p_kst 3.213333e-03   p_cons 9.972400e-01   p_joint 2.162000e-02

Joint ci ratio: 6.284788e-02	ci left: 2.299095e-02	ci right 2.448888e-02	k: 3797	n:160000
Cons ci ratio: 5.122655e-04	ci left: 9.970138e-01	ci right 9.975305e-01	k: 159565	n:160000
KS ci ratio: 1.727940e-01	ci left: 2.929174e-03	ci right 3.489067e-03	k: 512	n:160000
KIAA0415   160000 perm   42 sec   (3787 perm/sec)   p_kst 3.200000e-03   p_cons 9.972813e-01   p_joint 2.373125e-02

Joint ci ratio: 6.336369e-02	ci left: 2.131953e-02	ci right 2.272037e-02	k: 3742	n:170000
Cons ci ratio: 4.930562e-04	ci left: 9.970663e-01	ci right 9.975636e-01	k: 169545	n:170000
KS ci ratio: 1.676445e-01	ci left: 2.937088e-03	ci right 3.480073e-03	k: 544	n:170000
KIAA0415   170000 perm   46 sec   (3733 perm/sec)   p_kst 3.200000e-03   p_cons 9.973235e-01   p_joint 2.201176e-02

Joint ci ratio: 6.222510e-02	ci left: 2.090053e-02	ci right 2.224827e-02	k: 3882	n:180000
Cons ci ratio: 4.787550e-04	ci left: 9.970783e-01	ci right 9.975610e-01	k: 179519	n:180000
KS ci ratio: 1.639301e-01	ci left: 2.907039e-03	ci right 3.431387e-03	k: 569	n:180000
KIAA0415   180000 perm   49 sec   (3680 perm/sec)   p_kst 3.161111e-03   p_cons 9.973278e-01   p_joint 2.156667e-02

Joint ci ratio: 6.018925e-02	ci left: 2.117917e-02	ci right 2.249864e-02	k: 4148	n:190000
Cons ci ratio: 4.692909e-04	ci left: 9.970453e-01	ci right 9.975183e-01	k: 189485	n:190000
KS ci ratio: 1.591163e-01	ci left: 2.930805e-03	ci right 3.442434e-03	k: 604	n:190000
KIAA0415   190000 perm   52 sec   (3629 perm/sec)   p_kst 3.178947e-03   p_cons 9.972895e-01   p_joint 2.183158e-02

Joint ci ratio: 5.913318e-02	ci left: 2.086384e-02	ci right 2.214008e-02	k: 4299	n:200000
Cons ci ratio: 4.598685e-04	ci left: 9.970210e-01	ci right 9.974844e-01	k: 199452	n:200000
KS ci ratio: 1.551904e-01	ci left: 2.933170e-03	ci right 3.431402e-03	k: 635	n:200000
KIAA0415   200000 perm   56 sec   (3581 perm/sec)   p_kst 3.175000e-03   p_cons 9.972600e-01   p_joint 2.149500e-02

Joint ci ratio: 5.975557e-02	ci left: 1.948055e-02	ci right 2.068513e-02	k: 4216	n:210000
Cons ci ratio: 4.470457e-04	ci left: 9.970488e-01	ci right 9.974992e-01	k: 209429	n:210000
KS ci ratio: 1.522298e-01	ci left: 2.907961e-03	ci right 3.391629e-03	k: 660	n:210000
KIAA0415   210000 perm   59 sec   (3532 perm/sec)   p_kst 3.142857e-03   p_cons 9.972810e-01   p_joint 2.007619e-02

Joint ci ratio: 6.214638e-02	ci left: 1.721128e-02	ci right 1.831966e-02	k: 3907	n:220000
Cons ci ratio: 4.697969e-04	ci left: 9.966116e-01	ci right 9.970842e-01	k: 219308	n:220000
KS ci ratio: 1.512117e-01	ci left: 2.815126e-03	ci right 3.279938e-03	k: 669	n:220000
KIAA0415   220000 perm   63 sec   (3482 perm/sec)   p_kst 3.040909e-03   p_cons 9.968545e-01   p_joint 1.775909e-02

Joint ci ratio: 5.887693e-02	ci left: 1.835167e-02	ci right 1.946919e-02	k: 4348	n:230000
Cons ci ratio: 4.583560e-04	ci left: 9.966327e-01	ci right 9.970938e-01	k: 229280	n:230000
KS ci ratio: 1.488993e-01	ci left: 2.780602e-03	ci right 3.232067e-03	k: 690	n:230000
KIAA0415   230000 perm   67 sec   (3435 perm/sec)   p_kst 3.000000e-03   p_cons 9.968696e-01   p_joint 1.890435e-02

Joint ci ratio: 5.724691e-02	ci left: 1.861363e-02	ci right 1.971469e-02	k: 4598	n:240000
Cons ci ratio: 4.176234e-04	ci left: 9.970712e-01	ci right 9.974916e-01	k: 239349	n:240000
KS ci ratio: 1.454654e-01	ci left: 2.797182e-03	ci right 3.239955e-03	k: 723	n:240000
KIAA0415   240000 perm   71 sec   (3392 perm/sec)   p_kst 3.012500e-03   p_cons 9.972875e-01   p_joint 1.915833e-02

Joint ci ratio: 5.937549e-02	ci left: 1.662694e-02	ci right 1.764830e-02	k: 4283	n:250000
Cons ci ratio: 4.076222e-04	ci left: 9.970970e-01	ci right 9.975073e-01	k: 249327	n:250000
KS ci ratio: 1.427323e-01	ci left: 2.793256e-03	ci right 3.226393e-03	k: 751	n:250000
KIAA0415   250000 perm   75 sec   (3349 perm/sec)   p_kst 3.004000e-03   p_cons 9.973080e-01   p_joint 1.713200e-02

Joint ci ratio: 5.491823e-02	ci left: 1.869114e-02	ci right 1.975038e-02	k: 4996	n:260000
Cons ci ratio: 4.302945e-04	ci left: 9.966589e-01	ci right 9.970915e-01	k: 259189	n:260000
KS ci ratio: 1.408740e-01	ci left: 2.760014e-03	ci right 3.181956e-03	k: 771	n:260000
KIAA0415   260000 perm   79 sec   (3306 perm/sec)   p_kst 2.965385e-03   p_cons 9.968808e-01   p_joint 1.921538e-02

Joint ci ratio: 5.406287e-02	ci left: 1.858337e-02	ci right 1.961958e-02	k: 5156	n:270000
Cons ci ratio: 4.184084e-04	ci left: 9.967213e-01	ci right 9.971420e-01	k: 269173	n:270000
KS ci ratio: 1.375277e-01	ci left: 2.793634e-03	ci right 3.209740e-03	k: 809	n:270000
KIAA0415   270000 perm   83 sec   (3267 perm/sec)   p_kst 2.996296e-03   p_cons 9.969370e-01   p_joint 1.909630e-02

Joint ci ratio: 5.599828e-02	ci left: 1.671812e-02	ci right 1.768477e-02	k: 4815	n:280000
Cons ci ratio: 4.116682e-04	ci left: 9.967129e-01	ci right 9.971267e-01	k: 279139	n:280000
KS ci ratio: 1.347282e-01	ci left: 2.811156e-03	ci right 3.220666e-03	k: 843	n:280000
KIAA0415   280000 perm   87 sec   (3225 perm/sec)   p_kst 3.010714e-03   p_cons 9.969250e-01   p_joint 1.719643e-02

Joint ci ratio: 5.571593e-02	ci left: 1.631494e-02	ci right 1.725337e-02	k: 4866	n:290000
Cons ci ratio: 4.038748e-04	ci left: 9.967265e-01	ci right 9.971324e-01	k: 289111	n:290000
KS ci ratio: 1.321685e-01	ci left: 2.824215e-03	ci right 3.227197e-03	k: 876	n:290000
KIAA0415   290000 perm   91 sec   (3186 perm/sec)   p_kst 3.020690e-03   p_cons 9.969345e-01   p_joint 1.677931e-02

Joint ci ratio: 5.972390e-02	ci left: 1.373368e-02	ci right 1.458242e-02	k: 4246	n:300000
Cons ci ratio: 3.969374e-04	ci left: 9.967324e-01	ci right 9.971313e-01	k: 299081	n:300000
KS ci ratio: 1.301083e-01	ci left: 2.820346e-03	ci right 3.216018e-03	k: 904	n:300000
KIAA0415   300000 perm   95 sec   (3148 perm/sec)   p_kst 3.013333e-03   p_cons 9.969367e-01   p_joint 1.415333e-02

Joint ci ratio: 5.928645e-02	ci left: 1.349398e-02	ci right 1.432159e-02	k: 4310	n:310000
Cons ci ratio: 3.915800e-04	ci left: 9.967179e-01	ci right 9.971114e-01	k: 309045	n:310000
KS ci ratio: 1.287660e-01	ci left: 2.788670e-03	ci right 3.175553e-03	k: 923	n:310000
KIAA0415   310000 perm   100 sec   (3107 perm/sec)   p_kst 2.977419e-03   p_cons 9.969194e-01   p_joint 1.390323e-02

Joint ci ratio: 6.195370e-02	ci left: 1.197328e-02	ci right 1.274184e-02	k: 3953	n:320000
Cons ci ratio: 3.555029e-04	ci left: 9.971948e-01	ci right 9.975523e-01	k: 319161	n:320000
KS ci ratio: 1.270596e-01	ci left: 2.777148e-03	ci right 3.156942e-03	k: 948	n:320000
KIAA0415   320000 perm   104 sec   (3071 perm/sec)   p_kst 2.962500e-03   p_cons 9.973781e-01   p_joint 1.235312e-02

Joint ci ratio: 5.527992e-02	ci left: 1.459401e-02	ci right 1.542666e-02	k: 4952	n:330000
Cons ci ratio: 3.502270e-04	ci left: 9.971952e-01	ci right 9.975474e-01	k: 329134	n:330000
KS ci ratio: 1.255486e-01	ci left: 2.760485e-03	ci right 3.133177e-03	k: 971	n:330000
KIAA0415   330000 perm   109 sec   (3036 perm/sec)   p_kst 2.942424e-03   p_cons 9.973758e-01   p_joint 1.500606e-02

Joint ci ratio: 5.565835e-02	ci left: 1.397902e-02	ci right 1.478223e-02	k: 4888	n:340000
Cons ci ratio: 3.436271e-04	ci left: 9.972200e-01	ci right 9.975655e-01	k: 339115	n:340000
KS ci ratio: 1.233464e-01	ci left: 2.779033e-03	ci right 3.147167e-03	k: 1006	n:340000
KIAA0415   340000 perm   113 sec   (3003 perm/sec)   p_kst 2.958824e-03   p_cons 9.973971e-01   p_joint 1.437647e-02

Joint ci ratio: 4.539908e-02	ci left: 2.038342e-02	ci right 2.133311e-02	k: 7299	n:350000
Cons ci ratio: 3.386717e-04	ci left: 9.972227e-01	ci right 9.975632e-01	k: 349089	n:350000
KS ci ratio: 1.222009e-01	ci left: 2.752248e-03	ci right 3.113203e-03	k: 1025	n:350000
KIAA0415   350000 perm   118 sec   (2969 perm/sec)   p_kst 2.928571e-03   p_cons 9.973971e-01   p_joint 2.085429e-02

Joint ci ratio: 4.518246e-02	ci left: 2.001761e-02	ci right 2.094569e-02	k: 7372	n:360000
Cons ci ratio: 3.339247e-04	ci left: 9.972253e-01	ci right 9.975610e-01	k: 359063	n:360000
KS ci ratio: 1.201107e-01	ci left: 2.772768e-03	ci right 3.129752e-03	k: 1061	n:360000
KIAA0415   360000 perm   123 sec   (2937 perm/sec)   p_kst 2.947222e-03   p_cons 9.973972e-01   p_joint 2.047778e-02

Joint ci ratio: 4.489790e-02	ci left: 1.973306e-02	ci right 2.064204e-02	k: 7468	n:370000
Cons ci ratio: 3.279987e-04	ci left: 9.972501e-01	ci right 9.975799e-01	k: 369045	n:370000
KS ci ratio: 1.188868e-01	ci left: 2.755509e-03	ci right 3.106402e-03	k: 1083	n:370000
KIAA0415   370000 perm   127 sec   (2905 perm/sec)   p_kst 2.927027e-03   p_cons 9.974189e-01   p_joint 2.018378e-02

Joint ci ratio: 4.560954e-02	ci left: 1.863333e-02	ci right 1.950560e-02	k: 7245	n:380000
Cons ci ratio: 3.228538e-04	ci left: 9.972655e-01	ci right 9.975900e-01	k: 379024	n:380000
KS ci ratio: 1.176463e-01	ci left: 2.741730e-03	ci right 3.086972e-03	k: 1106	n:380000
KIAA0415   380000 perm   132 sec   (2873 perm/sec)   p_kst 2.910526e-03   p_cons 9.974316e-01   p_joint 1.906579e-02

Joint ci ratio: 5.013134e-02	ci left: 1.504878e-02	ci right 1.582511e-02	k: 6019	n:390000
Cons ci ratio: 3.184152e-04	ci left: 9.972721e-01	ci right 9.975922e-01	k: 389000	n:390000
KS ci ratio: 1.160325e-01	ci left: 2.748594e-03	ci right 3.089627e-03	k: 1137	n:390000
KIAA0415   390000 perm   137 sec   (2841 perm/sec)   p_kst 2.915385e-03   p_cons 9.974359e-01   p_joint 1.543333e-02

Joint ci ratio: 5.226658e-02	ci left: 1.350491e-02	ci right 1.423216e-02	k: 5546	n:400000
Cons ci ratio: 3.140002e-04	ci left: 9.972811e-01	ci right 9.975967e-01	k: 398977	n:400000
KS ci ratio: 1.150275e-01	ci left: 2.728432e-03	ci right 3.063833e-03	k: 1157	n:400000
KIAA0415   400000 perm   142 sec   (2811 perm/sec)   p_kst 2.892500e-03   p_cons 9.974425e-01   p_joint 1.386500e-02

Joint ci ratio: 5.344506e-02	ci left: 1.260495e-02	ci right 1.329951e-02	k: 5309	n:410000
Cons ci ratio: 3.090196e-04	ci left: 9.973021e-01	ci right 9.976127e-01	k: 408959	n:410000
KS ci ratio: 1.139996e-01	ci left: 2.711636e-03	ci right 3.041793e-03	k: 1178	n:410000
KIAA0415   410000 perm   147 sec   (2781 perm/sec)   p_kst 2.873171e-03   p_cons 9.974610e-01   p_joint 1.294878e-02

Joint ci ratio: 5.448098e-02	ci left: 1.184434e-02	ci right 1.251003e-02	k: 5113	n:420000
Cons ci ratio: 3.043975e-04	ci left: 9.973198e-01	ci right 9.976257e-01	k: 418940	n:420000
KS ci ratio: 1.128103e-01	ci left: 2.704908e-03	ci right 3.030582e-03	k: 1203	n:420000
KIAA0415   420000 perm   153 sec   (2751 perm/sec)   p_kst 2.864286e-03   p_cons 9.974762e-01   p_joint 1.217381e-02

Joint ci ratio: 5.373872e-02	ci left: 1.189466e-02	ci right 1.255379e-02	k: 5255	n:430000
Cons ci ratio: 3.008009e-04	ci left: 9.973222e-01	ci right 9.976245e-01	k: 428915	n:430000
KS ci ratio: 1.114758e-01	ci left: 2.707554e-03	ci right 3.029436e-03	k: 1232	n:430000
KIAA0415   430000 perm   158 sec   (2722 perm/sec)   p_kst 2.865116e-03   p_cons 9.974767e-01   p_joint 1.222093e-02

Joint ci ratio: 4.948870e-02	ci left: 1.371104e-02	ci right 1.440902e-02	k: 6185	n:440000
Cons ci ratio: 2.979988e-04	ci left: 9.973129e-01	ci right 9.976123e-01	k: 438885	n:440000
KS ci ratio: 1.104070e-01	ci left: 2.699050e-03	ci right 3.016644e-03	k: 1256	n:440000
KIAA0415   440000 perm   163 sec   (2694 perm/sec)   p_kst 2.854545e-03   p_cons 9.974659e-01   p_joint 1.405682e-02

Joint ci ratio: 4.725407e-02	ci left: 1.470617e-02	ci right 1.542009e-02	k: 6777	n:450000
Cons ci ratio: 2.942335e-04	ci left: 9.973223e-01	ci right 9.976179e-01	k: 448863	n:450000
KS ci ratio: 1.089428e-01	ci left: 2.712555e-03	ci right 3.027234e-03	k: 1290	n:450000
KIAA0415   450000 perm   169 sec   (2666 perm/sec)   p_kst 2.866667e-03   p_cons 9.974733e-01   p_joint 1.506000e-02

Joint ci ratio: 4.817169e-02	ci left: 1.384933e-02	ci right 1.453507e-02	k: 6527	n:460000
Cons ci ratio: 2.907306e-04	ci left: 9.973291e-01	ci right 9.976211e-01	k: 458840	n:460000
KS ci ratio: 1.077804e-01	ci left: 2.712806e-03	ci right 3.023943e-03	k: 1318	n:460000
KIAA0415   460000 perm   174 sec   (2640 perm/sec)   p_kst 2.865217e-03   p_cons 9.974783e-01   p_joint 1.418913e-02

Joint ci ratio: 5.082620e-02	ci left: 1.218011e-02	ci right 1.281741e-02	k: 5873	n:470000
Cons ci ratio: 2.867399e-04	ci left: 9.973465e-01	ci right 9.976346e-01	k: 468822	n:470000
KS ci ratio: 1.071340e-01	ci left: 2.688212e-03	ci right 2.994563e-03	k: 1334	n:470000
KIAA0415   470000 perm   180 sec   (2613 perm/sec)   p_kst 2.838298e-03   p_cons 9.974936e-01   p_joint 1.249574e-02

Joint ci ratio: 3.961251e-02	ci left: 1.959755e-02	ci right 2.039159e-02	k: 9596	n:480000
Cons ci ratio: 2.845530e-04	ci left: 9.973332e-01	ci right 9.976191e-01	k: 478790	n:480000
KS ci ratio: 1.061451e-01	ci left: 2.682902e-03	ci right 2.985649e-03	k: 1359	n:480000
KIAA0415   480000 perm   185 sec   (2588 perm/sec)   p_kst 2.831250e-03   p_cons 9.974792e-01   p_joint 1.999167e-02

Joint ci ratio: 3.916735e-02	ci left: 1.964014e-02	ci right 2.042677e-02	k: 9815	n:490000
Cons ci ratio: 2.822927e-04	ci left: 9.973226e-01	ci right 9.976061e-01	k: 488759	n:490000
KS ci ratio: 1.050691e-01	ci left: 2.683782e-03	ci right 2.983369e-03	k: 1387	n:490000
KIAA0415   490000 perm   191 sec   (2564 perm/sec)   p_kst 2.830612e-03   p_cons 9.974673e-01   p_joint 2.003061e-02

Joint ci ratio: 3.880004e-02	ci left: 1.961769e-02	ci right 2.039588e-02	k: 10002	n:500000
Cons ci ratio: 2.793066e-04	ci left: 9.973268e-01	ci right 9.976074e-01	k: 498735	n:500000
KS ci ratio: 1.039148e-01	ci left: 2.690487e-03	ci right 2.987321e-03	k: 1418	n:500000
KIAA0415   500000 perm   197 sec   (2541 perm/sec)   p_kst 2.836000e-03   p_cons 9.974700e-01   p_joint 2.000400e-02

Joint ci ratio: 3.974403e-02	ci left: 1.834551e-02	ci right 1.909134e-02	k: 9545	n:510000
Cons ci ratio: 2.755525e-04	ci left: 9.973470e-01	ci right 9.976238e-01	k: 508719	n:510000
KS ci ratio: 1.028689e-01	ci left: 2.693125e-03	ci right 2.987078e-03	k: 1447	n:510000
KIAA0415   510000 perm   203 sec   (2517 perm/sec)   p_kst 2.837255e-03   p_cons 9.974882e-01   p_joint 1.871569e-02

Joint ci ratio: 3.972166e-02	ci left: 1.801931e-02	ci right 1.875146e-02	k: 9559	n:520000
Cons ci ratio: 2.736073e-04	ci left: 9.973348e-01	ci right 9.976096e-01	k: 518687	n:520000
KS ci ratio: 1.021317e-01	ci left: 2.680682e-03	ci right 2.971055e-03	k: 1468	n:520000
KIAA0415   520000 perm   209 sec   (2493 perm/sec)   p_kst 2.823077e-03   p_cons 9.974750e-01   p_joint 1.838269e-02

Joint ci ratio: 3.935717e-02	ci left: 1.801185e-02	ci right 1.873683e-02	k: 9737	n:530000
Cons ci ratio: 2.708851e-04	ci left: 9.973386e-01	ci right 9.976106e-01	k: 528663	n:530000
KS ci ratio: 1.012399e-01	ci left: 2.677912e-03	ci right 2.965302e-03	k: 1494	n:530000
KIAA0415   530000 perm   215 sec   (2468 perm/sec)   p_kst 2.818868e-03   p_cons 9.974774e-01   p_joint 1.837170e-02

Joint ci ratio: 3.920644e-02	ci left: 1.781945e-02	ci right 1.853388e-02	k: 9814	n:540000
Cons ci ratio: 2.673523e-04	ci left: 9.973594e-01	ci right 9.976278e-01	k: 538648	n:540000
KS ci ratio: 1.000091e-01	ci left: 2.695116e-03	ci right 2.980629e-03	k: 1531	n:540000
KIAA0415   540000 perm   221 sec   (2445 perm/sec)   p_kst 2.835185e-03   p_cons 9.974963e-01   p_joint 1.817407e-02

Joint ci ratio: 3.664471e-02	ci left: 2.000820e-02	ci right 2.075687e-02	k: 11209	n:550000
Cons ci ratio: 2.662510e-04	ci left: 9.973346e-01	ci right 9.976019e-01	k: 548609	n:550000
KS ci ratio: 9.904387e-02	ci left: 2.699302e-03	ci right 2.982339e-03	k: 1561	n:550000
KIAA0415   550000 perm   227 sec   (2423 perm/sec)   p_kst 2.838182e-03   p_cons 9.974709e-01   p_joint 2.038000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0415.3_2492_550000_0.0028382_0.99747_0.02038.png
                gene_name: KIAA0415
               theta_stop: 0.099 
                    nperm: 550000 
                     p_ks: 0.0028 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 71 percent done.
KIAA0427
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
KIAA0427   10000 perm   2 sec   (6025 perm/sec)   p_kst 7.806000e-01   p_cons 6.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0427.3_1847_10000_0.7806_0.6746_1.png
                gene_name: KIAA0427
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
KIAA0430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
Cons ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
KS ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
KIAA0430   10000 perm   2 sec   (4710 perm/sec)   p_kst 9.098000e-01   p_cons 4.332000e-01   p_joint 8.816000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0430.3_5336_10000_0.9098_0.4332_0.8816.png
                gene_name: KIAA0430
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 73 percent done.
KIAA0513
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
KS ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
KIAA0513   10000 perm   2 sec   (5903 perm/sec)   p_kst 7.650000e-01   p_cons 7.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0513.3_1284_10000_0.765_0.7988_1.png
                gene_name: KIAA0513
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KIAA0652
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
KIAA0652   10000 perm   2 sec   (5766 perm/sec)   p_kst 1.867000e-01   p_cons 3.267000e-01   p_joint 1.995000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0652.3_1618_10000_0.1867_0.3267_0.1995.png
                gene_name: KIAA0652
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 76 percent done.
KIAA0776
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
Cons ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
KS ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
KIAA0776   10000 perm   2 sec   (5555 perm/sec)   p_kst 6.986000e-01   p_cons 3.575000e-01   p_joint 8.039000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0776.3_2461_10000_0.6986_0.3575_0.8039.png
                gene_name: KIAA0776
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 77 percent done.
KIAA0831
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
Cons ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
KS ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
KIAA0831   10000 perm   2 sec   (6103 perm/sec)   p_kst 4.300000e-01   p_cons 1.536000e-01   p_joint 4.529000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0831.3_1519_10000_0.43_0.1536_0.4529.png
                gene_name: KIAA0831
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 78 percent done.
KIAA0913
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
Cons ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
KS ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KIAA0913   10000 perm   2 sec   (4341 perm/sec)   p_kst 5.905000e-01   p_cons 5.590000e-01   p_joint 8.480000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0913.3_5633_10000_0.5905_0.559_0.848.png
                gene_name: KIAA0913
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 80 percent done.
KIAA1045
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
KS ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
KIAA1045   10000 perm   2 sec   (6147 perm/sec)   p_kst 6.240000e-01   p_cons 7.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1045.3_1231_10000_0.624_0.7883_1.png
                gene_name: KIAA1045
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
KIAA1257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
KS ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
KIAA1257   10000 perm   2 sec   (6250 perm/sec)   p_kst 4.910000e-01   p_cons 6.554000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1257.3_1258_10000_0.491_0.6554_1.png
                gene_name: KIAA1257
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
KIAA1310
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
Cons ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
KS ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KIAA1310   10000 perm   2 sec   (5561 perm/sec)   p_kst 5.038000e-01   p_cons 3.411000e-01   p_joint 5.644000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1310.3_2717_10000_0.5038_0.3411_0.5644.png
                gene_name: KIAA1310
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
KIAA1430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
Cons ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
KIAA1430   10000 perm   2 sec   (5735 perm/sec)   p_kst 1.810000e-02   p_cons 2.262000e-01   p_joint 8.180000e-02

Joint ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
Cons ci ratio: 4.987901e-02	ci left: 2.300297e-01	ci right 2.418471e-01	k: 4718	n:20000
KS ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
KIAA1430   20000 perm   4 sec   (5160 perm/sec)   p_kst 1.970000e-02   p_cons 2.359000e-01   p_joint 4.355000e-02

Joint ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
Cons ci ratio: 4.053321e-02	ci left: 2.328258e-01	ci right 2.424917e-01	k: 7129	n:30000
KS ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
KIAA1430   30000 perm   6 sec   (5029 perm/sec)   p_kst 1.790000e-02   p_cons 2.376333e-01   p_joint 3.940000e-02

Joint ci ratio: 1.184505e-01	ci left: 2.506931e-02	ci right 2.824990e-02	k: 1065	n:40000
Cons ci ratio: 3.495495e-02	ci left: 2.350011e-01	ci right 2.433867e-01	k: 9567	n:40000
KS ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
KIAA1430   40000 perm   8 sec   (4920 perm/sec)   p_kst 1.927500e-02   p_cons 2.391750e-01   p_joint 2.662500e-02

Joint ci ratio: 8.491377e-02	ci left: 3.914149e-02	ci right 4.263207e-02	k: 2043	n:50000
Cons ci ratio: 3.118587e-02	ci left: 2.363612e-01	ci right 2.438690e-01	k: 12005	n:50000
KS ci ratio: 1.241146e-01	ci left: 1.834473e-02	ci right 2.079150e-02	k: 977	n:50000
KIAA1430   50000 perm   10 sec   (4826 perm/sec)   p_kst 1.954000e-02   p_cons 2.401000e-01   p_joint 4.086000e-02

Joint ci ratio: 7.207514e-02	ci left: 4.528742e-02	ci right 4.868991e-02	k: 2818	n:60000
Cons ci ratio: 2.852627e-02	ci left: 2.359568e-01	ci right 2.428018e-01	k: 14362	n:60000
KS ci ratio: 1.127921e-01	ci left: 1.861920e-02	ci right 2.086093e-02	k: 1183	n:60000
KIAA1430   60000 perm   13 sec   (4738 perm/sec)   p_kst 1.971667e-02   p_cons 2.393667e-01   p_joint 4.696667e-02

Joint ci ratio: 6.601397e-02	ci left: 4.637180e-02	ci right 4.955152e-02	k: 3356	n:70000
Cons ci ratio: 2.732198e-02	ci left: 2.241285e-01	ci right 2.303512e-01	k: 15906	n:70000
KS ci ratio: 1.053761e-01	ci left: 1.836323e-02	ci right 2.041974e-02	k: 1356	n:70000
KIAA1430   70000 perm   15 sec   (4650 perm/sec)   p_kst 1.937143e-02   p_cons 2.272286e-01   p_joint 4.794286e-02

Joint ci ratio: 6.727429e-02	ci left: 3.934119e-02	ci right 4.209224e-02	k: 3256	n:80000
Cons ci ratio: 2.468557e-02	ci left: 2.366952e-01	ci right 2.426237e-01	k: 19172	n:80000
KS ci ratio: 9.843644e-02	ci left: 1.847984e-02	ci right 2.040523e-02	k: 1554	n:80000
KIAA1430   80000 perm   18 sec   (4569 perm/sec)   p_kst 1.942500e-02   p_cons 2.396500e-01   p_joint 4.070000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1430.3_1615_80000_0.019425_0.23965_0.0407.png
                gene_name: KIAA1430
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 85 percent done.
KIAA1462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.232463e-02	ci left: 9.043236e-01	ci right 9.156362e-01	k: 9101	n:10000
KS ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
KIAA1462   10000 perm   2 sec   (4882 perm/sec)   p_kst 7.682000e-01   p_cons 9.101000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1462.3_4092_10000_0.7682_0.9101_1.png
                gene_name: KIAA1462
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
KIAA1467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
Cons ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
KIAA1467   10000 perm   2 sec   (5955 perm/sec)   p_kst 6.783000e-01   p_cons 9.170000e-02   p_joint 2.852000e-01

Joint ci ratio: 3.599557e-02	ci left: 3.654946e-01	ci right 3.789425e-01	k: 7444	n:20000
Cons ci ratio: 8.666425e-02	ci left: 8.876415e-02	ci right 9.685468e-02	k: 1855	n:20000
KS ci ratio: 1.937994e-02	ci left: 6.650920e-01	ci right 6.781580e-01	k: 13433	n:20000
KIAA1467   20000 perm   4 sec   (5432 perm/sec)   p_kst 6.716500e-01   p_cons 9.275000e-02   p_joint 3.722000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1467.3_1921_20000_0.67165_0.09275_0.3722.png
                gene_name: KIAA1467
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 87 percent done.
KIAA0141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300808e-03	ci left: 9.858854e-01	ci right 9.902234e-01	k: 9882	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
KIAA0141   10000 perm   2 sec   (6565 perm/sec)   p_kst 8.846000e-01   p_cons 7.530000e-02   p_joint 9.882000e-01

Joint ci ratio: 1.744605e-02	ci left: 7.099460e-01	ci right 7.224911e-01	k: 14325	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 9.938985e-03	ci left: 8.816159e-01	ci right 8.904715e-01	k: 17722	n:20000
KIAA0141   20000 perm   3 sec   (5827 perm/sec)   p_kst 8.861000e-01   p_cons 7.280000e-02   p_joint 7.162500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0141.2_1596_20000_0.8861_0.0728_0.71625.png
                gene_name: KIAA0141
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 89 percent done.
KIAA0146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
Cons ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
KS ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KIAA0146   10000 perm   2 sec   (5005 perm/sec)   p_kst 5.250000e-02   p_cons 8.617000e-01   p_joint 5.069000e-01

Joint ci ratio: 3.530484e-02	ci left: 3.745612e-01	ci right 3.880733e-01	k: 7626	n:20000
Cons ci ratio: 1.186999e-02	ci left: 8.399599e-01	ci right 8.500396e-01	k: 16901	n:20000
KS ci ratio: 1.198764e-01	ci left: 4.770004e-02	ci right 5.383140e-02	k: 1014	n:20000
KIAA0146   20000 perm   4 sec   (4675 perm/sec)   p_kst 5.070000e-02   p_cons 8.450500e-01   p_joint 3.813000e-01

Joint ci ratio: 2.794329e-02	ci left: 3.905592e-01	ci right 4.016609e-01	k: 11883	n:30000
Cons ci ratio: 9.613182e-03	ci left: 8.430447e-01	ci right 8.512213e-01	k: 25415	n:30000
KS ci ratio: 9.676305e-02	ci left: 4.935155e-02	ci right 5.440235e-02	k: 1555	n:30000
KIAA0146   30000 perm   6 sec   (4636 perm/sec)   p_kst 5.183333e-02   p_cons 8.471667e-01   p_joint 3.961000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0146.2_2828_30000_0.051833_0.84717_0.3961.png
                gene_name: KIAA0146
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 90 percent done.
KIAA0247
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.841575e-02	ci left: 6.460919e-01	ci right 6.648174e-01	k: 6555	n:10000
Cons ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
KS ci ratio: 2.785170e-02	ci left: 6.551489e-01	ci right 6.737553e-01	k: 6645	n:10000
KIAA0247   10000 perm   1 sec   (6772 perm/sec)   p_kst 6.645000e-01   p_cons 1.791000e-01   p_joint 6.555000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0247.2_932_10000_0.6645_0.1791_0.6555.png
                gene_name: KIAA0247
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 91 percent done.
KIAA0284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
Cons ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
KS ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
KIAA0284   10000 perm   2 sec   (5235 perm/sec)   p_kst 4.062000e-01   p_cons 9.022000e-01   p_joint 9.165000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0284.2_4737_10000_0.4062_0.9022_0.9165.png
                gene_name: KIAA0284
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 92 percent done.
KIAA0494
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 94 percent done.
KIAA0562
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
KS ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
KIAA0562   10000 perm   2 sec   (6038 perm/sec)   p_kst 5.444000e-01   p_cons 5.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0562.2_2862_10000_0.5444_0.5142_1.png
                gene_name: KIAA0562
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
KIAA0892
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
KIAA0892   10000 perm   2 sec   (6203 perm/sec)   p_kst 7.357000e-01   p_cons 2.800000e-02   p_joint 6.650000e-02

Joint ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
Cons ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
KS ci ratio: 1.650254e-02	ci left: 7.321488e-01	ci right 7.443819e-01	k: 14766	n:20000
KIAA0892   20000 perm   4 sec   (5525 perm/sec)   p_kst 7.383000e-01   p_cons 4.480000e-02   p_joint 1.237000e-01

Joint ci ratio: 6.421136e-02	ci left: 1.069407e-01	ci right 1.140683e-01	k: 3314	n:30000
Cons ci ratio: 1.046657e-01	ci left: 4.232417e-02	ci right 4.703119e-02	k: 1339	n:30000
KS ci ratio: 1.348478e-02	ci left: 7.329846e-01	ci right 7.429693e-01	k: 22140	n:30000
KIAA0892   30000 perm   6 sec   (5239 perm/sec)   p_kst 7.380000e-01   p_cons 4.463333e-02   p_joint 1.104667e-01

Joint ci ratio: 4.641151e-02	ci left: 1.478260e-01	ci right 1.548747e-01	k: 6053	n:40000
Cons ci ratio: 9.044941e-02	ci left: 4.281783e-02	ci right 4.689857e-02	k: 1793	n:40000
KS ci ratio: 1.172878e-02	ci left: 7.319774e-01	ci right 7.406383e-01	k: 29453	n:40000
KIAA0892   40000 perm   8 sec   (5095 perm/sec)   p_kst 7.363250e-01   p_cons 4.482500e-02   p_joint 1.513250e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0892.2_1918_40000_0.73633_0.044825_0.15132.png
                gene_name: KIAA0892
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 96 percent done.
KIAA1279
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 3.599350e-02	ci left: 5.326745e-01	ci right 5.523008e-01	k: 5425	n:10000
KIAA1279   10000 perm   2 sec   (6483 perm/sec)   p_kst 5.425000e-01   p_cons 3.928000e-01   p_joint 6.373000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1279.2_1894_10000_0.5425_0.3928_0.6373.png
                gene_name: KIAA1279
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 97 percent done.
KIAA1328
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
KS ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
KIAA1328   10000 perm   2 sec   (6273 perm/sec)   p_kst 8.058000e-01   p_cons 7.595000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1328.2_1774_10000_0.8058_0.7595_1.png
                gene_name: KIAA1328
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
KIAA1486
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
KS ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
KIAA1486   10000 perm   2 sec   (6210 perm/sec)   p_kst 6.720000e-01   p_cons 4.283000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1486.2_1982_10000_0.672_0.4283_0.94.png
                gene_name: KIAA1486
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000090
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 90 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422111: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000091> was used as the working directory.
Started at Wed Oct 24 17:57:46 2012
Results reported at Wed Oct 24 18:09:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000091.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000091.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 91  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000091.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    707.45 sec.
    Max Memory :      5398 MB
    Max Swap   :      7734 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
91
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 91
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 91: processing genes 8143 - 8233
Calculating significance of each gene.
Using projection method.
8143	KIAA1529	9.606780e-01
8144	KIAA1530	1
8145	KIAA1539	5.585809e-01
8146	KIAA1543	1
8147	KIAA1549	9.915217e-01
8148	KIAA1586	7.037223e-01
8149	KIAA1598	8.061176e-01
8150	KIAA1609	8.027982e-01
8151	KIAA1614	5.251796e-01
8152	KIAA1632	6.750570e-01
8153	KIAA1644	3.770788e-01
8154	KIAA1683	9.996782e-01
8155	KIAA1704	1
8156	KIAA1712	7.061869e-01
8157	KIAA1715	8.381028e-02
8158	KIAA1737	1
8159	KIAA1751	4.567983e-01
8160	KIAA1755	9.714887e-01
8161	KIAA1797	7.813568e-01
8162	KIAA1804	1
8163	KIAA1826	5.468301e-01
8164	KIAA1841	2.368621e-01
8165	KIAA1919	8.789364e-01
8166	KIAA1949	9.803181e-01
8167	KIAA1958	5.208991e-01
8168	KIAA1967	1
8169	KIAA1984	9.265257e-01
8170	KIAA2013	1
8171	KIAA2018	9.997524e-01
8172	KIAA2022	9.265579e-01
8173	KIAA2026	9.999725e-01
8174	KIDINS220	9.989272e-01
8175	KIF11	7.987320e-01
8176	KIF12	9.471233e-01
8177	KIF13A	3.031934e-01
8178	KIF13B	1
8179	KIF14	1
8180	KIF15	9.331320e-01
8181	KIF16B	1
8182	KIF17	1
8183	KIF18A	9.240043e-01
8184	KIF18B	5.738338e-01
8185	KIF19	2.138947e-01
8186	KIF1A	6.100848e-01
8187	KIF1B	9.998661e-01
8188	KIF1C	1
8189	KIF20A	6.941620e-01
8190	KIF20B	9.961633e-01
8191	KIF21A	1.985562e-01
8192	KIF21B	9.998159e-01
8193	KIF22	1
8194	KIF23	9.753601e-01
8195	KIF24	9.944111e-01
8196	KIF25	5.960715e-01
8197	KIF26B	9.998936e-01
8198	KIF27	5.246551e-01
8199	KIF2A	1
8200	KIF2B	1
8201	KIF2C	9.425028e-01
8202	KIF3A	9.210090e-01
In gene KIF3B the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 2276    n = 1	mu =   5.69e-07
8203	KIF3B	7.094638e-01
8204	KIF3C	3.648635e-01
8205	KIF4A	1
8206	KIF4B	8.444672e-01
8207	KIF5A	9.252820e-01
8208	KIF5B	1
8209	KIF5C	4.331649e-01
8210	KIF6	3.425265e-01
8211	KIF7	5.879705e-01
8212	KIF9	1.156512e-01
8213	KIFAP3	2.551526e-01
8214	KIFC1	1
8215	KIFC2	9.512631e-01
8216	KIFC3	8.024901e-01
8217	KIN	7.394986e-01
8218	KIR2DL1	1.385006e-01
8219	KIR2DL3	3.990449e-01
8220	KIR2DL4	7.647340e-01
8221	KIR2DS4	2.372073e-02
8222	KIR3DL1	1
8223	KIR3DL2	1
8224	KIR3DL3	1
8225	KIR3DP1	1
8226	KIRREL	6.642986e-02
8227	KIRREL2	1
8228	KIRREL3	9.576001e-01
8229	KISS1	1
8230	KIT	6.725711e-01
8231	KITLG	1
8232	KL	5.404587e-01
8233	KLB	5.337586e-01
Done

Running MutSig 2:
Scatter job 91: processing genes 8143 - 8233
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIF2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
KIF2B   10000 perm   2 sec   (4796 perm/sec)   p_kst 4.236000e-01   p_cons 3.267000e-01   p_joint 4.152000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2B.29_2026_10000_0.4236_0.3267_0.4152.png
                gene_name: KIF2B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 1 percent done.
KIAA2022
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
Cons ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
KIAA2022   10000 perm   2 sec   (4945 perm/sec)   p_kst 2.918000e-01   p_cons 9.134000e-01   p_joint 5.861000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2022.21_4563_10000_0.2918_0.9134_0.5861.png
                gene_name: KIAA2022
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 3 percent done.
KIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
KIF4B   10000 perm   2 sec   (4933 perm/sec)   p_kst 8.270000e-01   p_cons 5.389000e-01   p_joint 8.914000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4B.20_3709_10000_0.827_0.5389_0.8914.png
                gene_name: KIF4B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 4 percent done.
KIAA1632
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
Cons ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KIAA1632   10000 perm   3 sec   (3903 perm/sec)   p_kst 2.295000e-01   p_cons 3.968000e-01   p_joint 3.563000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1632.19_7916_10000_0.2295_0.3968_0.3563.png
                gene_name: KIAA1632
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 6 percent done.
KIAA1755
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 3.003833e-02	ci left: 6.204504e-01	ci right 6.394738e-01	k: 6300	n:10000
KS ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KIAA1755   10000 perm   2 sec   (4712 perm/sec)   p_kst 5.650000e-02   p_cons 6.300000e-01   p_joint 7.680000e-02

Joint ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
Cons ci ratio: 2.145366e-02	ci left: 6.185989e-01	ci right 6.320646e-01	k: 12507	n:20000
KS ci ratio: 1.148384e-01	ci left: 5.188028e-02	ci right 5.824985e-02	k: 1100	n:20000
KIAA1755   20000 perm   5 sec   (4313 perm/sec)   p_kst 5.500000e-02   p_cons 6.253500e-01   p_joint 1.066500e-01

Joint ci ratio: 7.020695e-02	ci left: 9.081888e-02	ci right 9.745996e-02	k: 2823	n:30000
Cons ci ratio: 1.751401e-02	ci left: 6.199277e-01	ci right 6.309146e-01	k: 18763	n:30000
KS ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
KIAA1755   30000 perm   7 sec   (4184 perm/sec)   p_kst 5.550000e-02   p_cons 6.254333e-01   p_joint 9.410000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1755.16_3659_30000_0.0555_0.62543_0.0941.png
                gene_name: KIAA1755
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 7 percent done.
KIF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
Cons ci ratio: 1.853496e-02	ci left: 8.095843e-01	ci right 8.248305e-01	k: 8173	n:10000
KS ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KIF21A   10000 perm   2 sec   (4626 perm/sec)   p_kst 6.309000e-01   p_cons 8.173000e-01   p_joint 8.288000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21A.16_5177_10000_0.6309_0.8173_0.8288.png
                gene_name: KIF21A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 9 percent done.
KIAA1549
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.224561e-02	ci left: 7.478628e-01	ci right 7.647876e-01	k: 7564	n:10000
Cons ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
KIAA1549   10000 perm   2 sec   (4367 perm/sec)   p_kst 5.276000e-01   p_cons 8.240000e-01   p_joint 7.564000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1549.14_5933_10000_0.5276_0.824_0.7564.png
                gene_name: KIAA1549
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 10 percent done.
KIAA1797
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
Cons ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
KS ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
KIAA1797   10000 perm   2 sec   (4669 perm/sec)   p_kst 7.095000e-01   p_cons 8.280000e-02   p_joint 2.586000e-01

Joint ci ratio: 4.630507e-02	ci left: 2.576525e-01	ci right 2.699163e-01	k: 5275	n:20000
Cons ci ratio: 9.201059e-02	ci left: 7.935919e-02	ci right 8.706249e-02	k: 1663	n:20000
KS ci ratio: 1.624002e-02	ci left: 7.383448e-01	ci right 7.504840e-01	k: 14889	n:20000
KIAA1797   20000 perm   5 sec   (4286 perm/sec)   p_kst 7.444500e-01   p_cons 8.315000e-02   p_joint 2.637500e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1797.14_5578_20000_0.74445_0.08315_0.26375.png
                gene_name: KIAA1797
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
KIF13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.305600e-02	ci left: 8.941583e-01	ci right 9.060075e-01	k: 9002	n:10000
KS ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
KIF13A   10000 perm   2 sec   (4436 perm/sec)   p_kst 8.935000e-01   p_cons 9.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF13A.13_5599_10000_0.8935_0.9002_1.png
                gene_name: KIF13A
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
KIAA2026
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
KS ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
KIAA2026   10000 perm   2 sec   (4485 perm/sec)   p_kst 9.380000e-01   p_cons 6.155000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA2026.12_6344_10000_0.938_0.6155_1.png
                gene_name: KIAA2026
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
KIF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
Cons ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KS ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
KIF1B   10000 perm   2 sec   (4203 perm/sec)   p_kst 8.548000e-01   p_cons 1.597000e-01   p_joint 5.555000e-01

Outputting figure to mutsig2_images.part000000000091/KIF1B.12_6986_10000_0.8548_0.1597_0.5555.png
                gene_name: KIF1B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 16 percent done.
KIAA2018
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
Cons ci ratio: 4.030713e-02	ci left: 4.761593e-01	ci right 4.958489e-01	k: 4860	n:10000
KS ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KIAA2018   10000 perm   2 sec   (4438 perm/sec)   p_kst 6.590000e-01   p_cons 4.860000e-01   p_joint 6.398000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2018.11_6758_10000_0.659_0.486_0.6398.png
                gene_name: KIAA2018
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 17 percent done.
KIF26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
KIF26B   10000 perm   2 sec   (4564 perm/sec)   p_kst 9.210000e-02   p_cons 7.110000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
Cons ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
KS ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
KIF26B   20000 perm   5 sec   (4179 perm/sec)   p_kst 9.225000e-02   p_cons 7.215000e-02   p_joint 3.750000e-02

Joint ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
Cons ci ratio: 8.003932e-02	ci left: 7.106253e-02	ci right 7.702028e-02	k: 2220	n:30000
KS ci ratio: 7.151438e-02	ci left: 8.776850e-02	ci right 9.431094e-02	k: 2730	n:30000
KIF26B   30000 perm   7 sec   (4031 perm/sec)   p_kst 9.100000e-02   p_cons 7.400000e-02   p_joint 5.143333e-02

Outputting figure to mutsig2_images.part000000000091/KIF26B.11_6387_30000_0.091_0.074_0.051433.png
                gene_name: KIF26B
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 19 percent done.
KIF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
Cons ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
KIF6   10000 perm   2 sec   (5276 perm/sec)   p_kst 6.170000e-02   p_cons 2.971000e-01   p_joint 1.091000e-01

Joint ci ratio: 9.326961e-02	ci left: 7.735273e-02	ci right 8.496956e-02	k: 1622	n:20000
Cons ci ratio: 4.231550e-02	ci left: 2.938522e-01	ci right 3.066059e-01	k: 6004	n:20000
KS ci ratio: 1.106956e-01	ci left: 5.572506e-02	ci right 6.230387e-02	k: 1179	n:20000
KIF6   20000 perm   4 sec   (4803 perm/sec)   p_kst 5.895000e-02   p_cons 3.002000e-01   p_joint 8.110000e-02

Joint ci ratio: 6.005227e-02	ci left: 1.206194e-01	ci right 1.281202e-01	k: 3730	n:30000
Cons ci ratio: 3.458754e-02	ci left: 2.945852e-01	ci right 3.049870e-01	k: 8993	n:30000
KS ci ratio: 9.011304e-02	ci left: 5.665347e-02	ci right 6.203226e-02	k: 1779	n:30000
KIF6   30000 perm   6 sec   (4623 perm/sec)   p_kst 5.930000e-02   p_cons 2.997667e-01   p_joint 1.243333e-01

Outputting figure to mutsig2_images.part000000000091/KIF6.11_2537_30000_0.0593_0.29977_0.12433.png
                gene_name: KIF6
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 20 percent done.
KIDINS220
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
Cons ci ratio: 3.752878e-02	ci left: 5.118543e-01	ci right 5.315331e-01	k: 5217	n:10000
KS ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
KIDINS220   10000 perm   2 sec   (4487 perm/sec)   p_kst 8.650000e-02   p_cons 5.217000e-01   p_joint 1.965000e-01

Joint ci ratio: 6.455812e-02	ci left: 1.506018e-01	ci right 1.606986e-01	k: 3112	n:20000
Cons ci ratio: 2.632945e-02	ci left: 5.187013e-01	ci right 5.325912e-01	k: 10513	n:20000
KS ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
KIDINS220   20000 perm   5 sec   (4129 perm/sec)   p_kst 8.750000e-02   p_cons 5.256500e-01   p_joint 1.556000e-01

Outputting figure to mutsig2_images.part000000000091/KIDINS220.10_5432_20000_0.0875_0.52565_0.1556.png
                gene_name: KIDINS220
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 21 percent done.
KIF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KIF1A   10000 perm   2 sec   (4926 perm/sec)   p_kst 1   p_cons 9.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF1A.10_5257_10000_1_0.9408_1.png
                gene_name: KIF1A
               theta_stop: 0.0098 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
KIR3DL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
KIR3DL1   10000 perm   2 sec   (6620 perm/sec)   p_kst 4.740000e-01   p_cons 3.174000e-01   p_joint 7.270000e-01

Outputting figure to mutsig2_images.part000000000091/KIR3DL1.9_1371_10000_0.474_0.3174_0.727.png
                gene_name: KIR3DL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 24 percent done.
KIAA1614
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
KIAA1614   10000 perm   2 sec   (5439 perm/sec)   p_kst 6.490000e-02   p_cons 6.844000e-01   p_joint 1.706000e-01

Joint ci ratio: 6.285674e-02	ci left: 1.576584e-01	ci right 1.679398e-01	k: 3255	n:20000
Cons ci ratio: 1.894866e-02	ci left: 6.749921e-01	ci right 6.879551e-01	k: 13630	n:20000
KS ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
KIAA1614   20000 perm   4 sec   (4923 perm/sec)   p_kst 6.330000e-02   p_cons 6.815000e-01   p_joint 1.627500e-01

Joint ci ratio: 6.174627e-02	ci left: 1.147645e-01	ci right 1.221096e-01	k: 3552	n:30000
Cons ci ratio: 1.541232e-02	ci left: 6.778678e-01	ci right 6.884300e-01	k: 20495	n:30000
KS ci ratio: 8.871728e-02	ci left: 5.838299e-02	ci right 6.383572e-02	k: 1832	n:30000
KIAA1614   30000 perm   6 sec   (4737 perm/sec)   p_kst 6.106667e-02   p_cons 6.831667e-01   p_joint 1.184000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1614.9_3609_30000_0.061067_0.68317_0.1184.png
                gene_name: KIAA1614
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 26 percent done.
KIF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
Cons ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
KS ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
KIF21B   10000 perm   2 sec   (4851 perm/sec)   p_kst 2.064000e-01   p_cons 5.012000e-01   p_joint 3.276000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21B.9_5011_10000_0.2064_0.5012_0.3276.png
                gene_name: KIF21B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 27 percent done.
KIAA1751
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
Cons ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
KS ci ratio: 3.503973e-02	ci left: 5.459963e-01	ci right 5.655712e-01	k: 5558	n:10000
KIAA1751   10000 perm   2 sec   (6220 perm/sec)   p_kst 5.558000e-01   p_cons 1.841000e-01   p_joint 4.537000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1751.8_2357_10000_0.5558_0.1841_0.4537.png
                gene_name: KIAA1751
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 29 percent done.
KIF27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
KIF27   10000 perm   2 sec   (5258 perm/sec)   p_kst 2.140000e-02   p_cons 7.722000e-01   p_joint 7.740000e-02

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 1.479391e-02	ci left: 7.724779e-01	ci right 7.840411e-01	k: 15566	n:20000
KS ci ratio: 1.885661e-01	ci left: 1.915306e-02	ci right 2.318783e-02	k: 422	n:20000
KIF27   20000 perm   4 sec   (4755 perm/sec)   p_kst 2.110000e-02   p_cons 7.783000e-01   p_joint 6.980000e-02

Joint ci ratio: 7.690508e-02	ci left: 7.662674e-02	ci right 8.278828e-02	k: 2390	n:30000
Cons ci ratio: 1.208848e-02	ci left: 7.732873e-01	ci right 7.827254e-01	k: 23341	n:30000
KS ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
KIF27   30000 perm   7 sec   (4580 perm/sec)   p_kst 2.196667e-02   p_cons 7.780333e-01   p_joint 7.966667e-02

Joint ci ratio: 7.325724e-02	ci left: 6.434767e-02	ci right 6.926545e-02	k: 2671	n:40000
Cons ci ratio: 1.050478e-02	ci left: 7.727372e-01	ci right 7.809225e-01	k: 31074	n:40000
KS ci ratio: 1.276003e-01	ci left: 2.157740e-02	ci right 2.454240e-02	k: 921	n:40000
KIF27   40000 perm   9 sec   (4464 perm/sec)   p_kst 2.302500e-02   p_cons 7.768500e-01   p_joint 6.677500e-02

Joint ci ratio: 6.464627e-02	ci left: 6.628128e-02	ci right 7.072897e-02	k: 3424	n:50000
Cons ci ratio: 9.370010e-03	ci left: 7.741300e-01	ci right 7.814377e-01	k: 38890	n:50000
KS ci ratio: 1.129070e-01	ci left: 2.220936e-02	ci right 2.488635e-02	k: 1176	n:50000
KIF27   50000 perm   11 sec   (4368 perm/sec)   p_kst 2.352000e-02   p_cons 7.778000e-01   p_joint 6.848000e-02

Joint ci ratio: 5.224885e-02	ci left: 8.352136e-02	ci right 8.801880e-02	k: 5145	n:60000
Cons ci ratio: 8.752981e-03	ci left: 7.663433e-01	ci right 7.730972e-01	k: 46184	n:60000
KS ci ratio: 1.034605e-01	ci left: 2.215643e-02	ci right 2.458997e-02	k: 1401	n:60000
KIF27   60000 perm   14 sec   (4253 perm/sec)   p_kst 2.335000e-02   p_cons 7.697333e-01   p_joint 8.575000e-02

Joint ci ratio: 4.658199e-02	ci left: 8.972735e-02	ci right 9.402084e-02	k: 6430	n:70000
Cons ci ratio: 8.112937e-03	ci left: 7.661896e-01	ci right 7.724452e-01	k: 53853	n:70000
KS ci ratio: 9.583588e-02	ci left: 2.222303e-02	ci right 2.447387e-02	k: 1633	n:70000
KIF27   70000 perm   17 sec   (4185 perm/sec)   p_kst 2.332857e-02   p_cons 7.693286e-01   p_joint 9.185714e-02

Outputting figure to mutsig2_images.part000000000091/KIF27.8_4274_70000_0.023329_0.76933_0.091857.png
                gene_name: KIF27
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 30 percent done.
KIF5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
Cons ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
KIF5A   10000 perm   2 sec   (5722 perm/sec)   p_kst 3.320000e-01   p_cons 2.826000e-01   p_joint 3.900000e-01

Outputting figure to mutsig2_images.part000000000091/KIF5A.8_3211_10000_0.332_0.2826_0.39.png
                gene_name: KIF5A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 31 percent done.
KIF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
KS ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KIF9   10000 perm   2 sec   (5742 perm/sec)   p_kst 8.590000e-02   p_cons 1.850000e-02   p_joint 2.680000e-02

Joint ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
Cons ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
KS ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
KIF9   20000 perm   4 sec   (5196 perm/sec)   p_kst 8.350000e-02   p_cons 1.550000e-02   p_joint 1.795000e-02

Joint ci ratio: 1.484976e-01	ci left: 2.101211e-02	ci right 2.441452e-02	k: 680	n:30000
Cons ci ratio: 1.758150e-01	ci left: 1.486554e-02	ci right 1.776256e-02	k: 488	n:30000
KS ci ratio: 7.544047e-02	ci left: 7.944335e-02	ci right 8.570443e-02	k: 2476	n:30000
KIF9   30000 perm   6 sec   (4979 perm/sec)   p_kst 8.253333e-02   p_cons 1.626667e-02   p_joint 2.266667e-02

Joint ci ratio: 1.498265e-01	ci left: 1.556318e-02	ci right 1.810766e-02	k: 672	n:40000
Cons ci ratio: 1.528578e-01	ci left: 1.493743e-02	ci right 1.743352e-02	k: 646	n:40000
KS ci ratio: 6.711806e-02	ci left: 7.593167e-02	ci right 8.122971e-02	k: 3142	n:40000
KIF9   40000 perm   8 sec   (4844 perm/sec)   p_kst 7.855000e-02   p_cons 1.615000e-02   p_joint 1.680000e-02

Joint ci ratio: 1.518072e-01	ci left: 1.216021e-02	ci right 1.417690e-02	k: 657	n:50000
Cons ci ratio: 1.352616e-01	ci left: 1.540155e-02	ci right 1.765509e-02	k: 825	n:50000
KS ci ratio: 6.000541e-02	ci left: 7.627540e-02	ci right 8.101366e-02	k: 3931	n:50000
KIF9   50000 perm   11 sec   (4725 perm/sec)   p_kst 7.862000e-02   p_cons 1.650000e-02   p_joint 1.314000e-02

Joint ci ratio: 1.523275e-01	ci left: 1.008457e-02	ci right 1.176324e-02	k: 654	n:60000
Cons ci ratio: 1.225496e-01	ci left: 1.573823e-02	ci right 1.780889e-02	k: 1005	n:60000
KS ci ratio: 5.500789e-02	ci left: 7.588279e-02	ci right 8.019146e-02	k: 4681	n:60000
KIF9   60000 perm   13 sec   (4624 perm/sec)   p_kst 7.801667e-02   p_cons 1.675000e-02   p_joint 1.090000e-02

Joint ci ratio: 1.260460e-01	ci left: 1.276889e-02	ci right 1.450034e-02	k: 953	n:70000
Cons ci ratio: 1.100586e-01	ci left: 1.681947e-02	ci right 1.879222e-02	k: 1245	n:70000
KS ci ratio: 5.115807e-02	ci left: 7.540257e-02	ci right 7.937540e-02	k: 5416	n:70000
KIF9   70000 perm   15 sec   (4532 perm/sec)   p_kst 7.737143e-02   p_cons 1.778571e-02   p_joint 1.361429e-02

Joint ci ratio: 1.028403e-01	ci left: 1.691939e-02	ci right 1.876582e-02	k: 1426	n:80000
Cons ci ratio: 1.039206e-01	ci left: 1.656610e-02	ci right 1.839413e-02	k: 1397	n:80000
KS ci ratio: 4.792058e-02	ci left: 7.533483e-02	ci right 7.904590e-02	k: 6174	n:80000
KIF9   80000 perm   18 sec   (4451 perm/sec)   p_kst 7.717500e-02   p_cons 1.746250e-02   p_joint 1.782500e-02

Joint ci ratio: 9.439790e-02	ci left: 1.791180e-02	ci right 1.969719e-02	k: 1691	n:90000
Cons ci ratio: 9.787448e-02	ci left: 1.665335e-02	ci right 1.837794e-02	k: 1575	n:90000
KS ci ratio: 4.519364e-02	ci left: 7.539835e-02	ci right 7.889563e-02	k: 6942	n:90000
KIF9   90000 perm   21 sec   (4372 perm/sec)   p_kst 7.713333e-02   p_cons 1.750000e-02   p_joint 1.878889e-02

Outputting figure to mutsig2_images.part000000000091/KIF9.8_2453_90000_0.077133_0.0175_0.018789.png
                gene_name: KIF9
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 33 percent done.
KIFAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
Cons ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
KS ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
KIFAP3   10000 perm   2 sec   (5803 perm/sec)   p_kst 3.520000e-02   p_cons 3.320000e-02   p_joint 3.470000e-02

Joint ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
KIFAP3   20000 perm   4 sec   (5235 perm/sec)   p_kst 3.425000e-02   p_cons 3.045000e-02   p_joint 1.380000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
KS ci ratio: 1.196653e-01	ci left: 3.246326e-02	ci right 3.662751e-02	k: 1035	n:30000
KIFAP3   30000 perm   6 sec   (5033 perm/sec)   p_kst 3.450000e-02   p_cons 3.043333e-02   p_joint 1.430000e-02

Joint ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
Cons ci ratio: 1.101313e-01	ci left: 2.900680e-02	ci right 3.241178e-02	k: 1227	n:40000
KS ci ratio: 1.041948e-01	ci left: 3.239160e-02	ci right 3.597644e-02	k: 1366	n:40000
KIFAP3   40000 perm   8 sec   (4895 perm/sec)   p_kst 3.415000e-02   p_cons 3.067500e-02   p_joint 1.347500e-02

Joint ci ratio: 1.437219e-01	ci left: 1.360549e-02	ci right 1.573141e-02	k: 732	n:50000
Cons ci ratio: 9.947834e-02	ci left: 2.861968e-02	ci right 3.163520e-02	k: 1505	n:50000
KS ci ratio: 9.265584e-02	ci left: 3.295644e-02	ci right 3.617789e-02	k: 1727	n:50000
KIFAP3   50000 perm   10 sec   (4779 perm/sec)   p_kst 3.454000e-02   p_cons 3.010000e-02   p_joint 1.464000e-02

Joint ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
Cons ci ratio: 9.055817e-02	ci left: 2.891027e-02	ci right 3.166875e-02	k: 1816	n:60000
KS ci ratio: 8.491436e-02	ci left: 3.284164e-02	ci right 3.577030e-02	k: 2057	n:60000
KIFAP3   60000 perm   13 sec   (4665 perm/sec)   p_kst 3.428333e-02   p_cons 3.026667e-02   p_joint 1.355000e-02

Joint ci ratio: 1.334763e-01	ci left: 1.135845e-02	ci right 1.299664e-02	k: 851	n:70000
Cons ci ratio: 8.355319e-02	ci left: 2.921049e-02	ci right 3.177148e-02	k: 2133	n:70000
KS ci ratio: 7.864943e-02	ci left: 3.292191e-02	ci right 3.563116e-02	k: 2398	n:70000
KIFAP3   70000 perm   15 sec   (4577 perm/sec)   p_kst 3.425714e-02   p_cons 3.047143e-02   p_joint 1.215714e-02

Joint ci ratio: 1.413278e-01	ci left: 8.851456e-03	ci right 1.020947e-02	k: 761	n:80000
Cons ci ratio: 7.785872e-02	ci left: 2.951543e-02	ci right 3.191877e-02	k: 2456	n:80000
KS ci ratio: 7.363545e-02	ci left: 3.295128e-02	ci right 3.548265e-02	k: 2736	n:80000
KIFAP3   80000 perm   18 sec   (4487 perm/sec)   p_kst 3.420000e-02   p_cons 3.070000e-02   p_joint 9.512500e-03

Joint ci ratio: 1.341367e-01	ci left: 8.769120e-03	ci right 1.004058e-02	k: 845	n:90000
Cons ci ratio: 7.383593e-02	ci left: 2.924429e-02	ci right 3.149722e-02	k: 2732	n:90000
KS ci ratio: 6.950752e-02	ci left: 3.294564e-02	ci right 3.532895e-02	k: 3071	n:90000
KIFAP3   90000 perm   20 sec   (4408 perm/sec)   p_kst 3.412222e-02   p_cons 3.035556e-02   p_joint 9.388889e-03

Joint ci ratio: 9.660061e-02	ci left: 1.541684e-02	ci right 1.699140e-02	k: 1619	n:100000
Cons ci ratio: 7.021006e-02	ci left: 2.916760e-02	ci right 3.129976e-02	k: 3022	n:100000
KS ci ratio: 6.596401e-02	ci left: 3.298369e-02	ci right 3.524344e-02	k: 3410	n:100000
KIFAP3   100000 perm   23 sec   (4337 perm/sec)   p_kst 3.410000e-02   p_cons 3.022000e-02   p_joint 1.619000e-02

Outputting figure to mutsig2_images.part000000000091/KIFAP3.8_2459_100000_0.0341_0.03022_0.01619.png
                gene_name: KIFAP3
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 34 percent done.
KIRREL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
KIRREL   10000 perm   2 sec   (5587 perm/sec)   p_kst 3.167000e-01   p_cons 1.030000e-02   p_joint 6.660000e-02

Joint ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
Cons ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
KS ci ratio: 4.189632e-02	ci left: 2.980265e-01	ci right 3.108304e-01	k: 6088	n:20000
KIRREL   20000 perm   4 sec   (5077 perm/sec)   p_kst 3.044000e-01   p_cons 1.015000e-02   p_joint 4.480000e-02

Joint ci ratio: 1.149767e-01	ci left: 3.515152e-02	ci right 3.947201e-02	k: 1118	n:30000
Cons ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
KS ci ratio: 3.419344e-02	ci left: 2.993945e-01	ci right 3.098434e-01	k: 9138	n:30000
KIRREL   30000 perm   6 sec   (4872 perm/sec)   p_kst 3.046000e-01   p_cons 1.010000e-02   p_joint 3.726667e-02

Joint ci ratio: 8.577258e-02	ci left: 4.749255e-02	ci right 5.177313e-02	k: 1984	n:40000
Cons ci ratio: 1.886845e-01	ci left: 9.667217e-03	ci right 1.170476e-02	k: 426	n:40000
KS ci ratio: 2.950673e-02	ci left: 3.016101e-01	ci right 3.106680e-01	k: 12245	n:40000
KIRREL   40000 perm   8 sec   (4737 perm/sec)   p_kst 3.061250e-01   p_cons 1.065000e-02   p_joint 4.960000e-02

Joint ci ratio: 9.188750e-02	ci left: 3.350395e-02	ci right 3.675031e-02	k: 1755	n:50000
Cons ci ratio: 1.662259e-01	ci left: 1.008506e-02	ci right 1.193237e-02	k: 549	n:50000
KS ci ratio: 2.644577e-02	ci left: 3.012249e-01	ci right 3.093178e-01	k: 15263	n:50000
KIRREL   50000 perm   11 sec   (4629 perm/sec)   p_kst 3.052600e-01   p_cons 1.098000e-02   p_joint 3.510000e-02

Joint ci ratio: 8.111337e-02	ci left: 3.594489e-02	ci right 3.900006e-02	k: 2247	n:60000
Cons ci ratio: 1.513955e-01	ci left: 1.021289e-02	ci right 1.190157e-02	k: 662	n:60000
KS ci ratio: 2.410823e-02	ci left: 3.021643e-01	ci right 3.095545e-01	k: 18351	n:60000
KIRREL   60000 perm   13 sec   (4528 perm/sec)   p_kst 3.058500e-01   p_cons 1.103333e-02   p_joint 3.745000e-02

Joint ci ratio: 7.662199e-02	ci left: 3.466013e-02	ci right 3.743564e-02	k: 2522	n:70000
Cons ci ratio: 1.393927e-01	ci left: 1.039221e-02	ci right 1.196299e-02	k: 781	n:70000
KS ci ratio: 2.256225e-02	ci left: 2.978880e-01	ci right 3.046999e-01	k: 21090	n:70000
KIRREL   70000 perm   16 sec   (4441 perm/sec)   p_kst 3.012857e-01   p_cons 1.115714e-02   p_joint 3.602857e-02

Joint ci ratio: 6.031574e-02	ci left: 4.863537e-02	ci right 5.167236e-02	k: 4011	n:80000
Cons ci ratio: 1.302953e-01	ci left: 1.045809e-02	ci right 1.192768e-02	k: 894	n:80000
KS ci ratio: 2.074958e-02	ci left: 3.052877e-01	ci right 3.117012e-01	k: 24679	n:80000
KIRREL   80000 perm   18 sec   (4368 perm/sec)   p_kst 3.084875e-01   p_cons 1.117500e-02   p_joint 5.013750e-02

Joint ci ratio: 6.360916e-02	ci left: 3.919951e-02	ci right 4.178577e-02	k: 3643	n:90000
Cons ci ratio: 1.228360e-01	ci left: 1.050116e-02	ci right 1.188617e-02	k: 1006	n:90000
KS ci ratio: 1.959503e-02	ci left: 3.047740e-01	ci right 3.108162e-01	k: 27701	n:90000
KIRREL   90000 perm   21 sec   (4290 perm/sec)   p_kst 3.077889e-01   p_cons 1.117778e-02   p_joint 4.047778e-02

Joint ci ratio: 6.091872e-02	ci left: 3.854746e-02	ci right 4.097932e-02	k: 3975	n:100000
Cons ci ratio: 1.169502e-01	ci left: 1.045985e-02	ci right 1.176874e-02	k: 1110	n:100000
KS ci ratio: 1.860651e-02	ci left: 3.045408e-01	ci right 3.102704e-01	k: 30740	n:100000
KIRREL   100000 perm   24 sec   (4214 perm/sec)   p_kst 3.074000e-01   p_cons 1.110000e-02   p_joint 3.975000e-02

Joint ci ratio: 5.968359e-02	ci left: 3.660895e-02	ci right 3.887005e-02	k: 4150	n:110000
Cons ci ratio: 1.110537e-01	ci left: 1.057763e-02	ci right 1.183015e-02	k: 1231	n:110000
KS ci ratio: 1.776150e-02	ci left: 3.041751e-01	ci right 3.096351e-01	k: 33759	n:110000
KIRREL   110000 perm   27 sec   (4142 perm/sec)   p_kst 3.069000e-01   p_cons 1.119091e-02   p_joint 3.772727e-02

Joint ci ratio: 5.153833e-02	ci left: 4.480510e-02	ci right 4.718357e-02	k: 5518	n:120000
Cons ci ratio: 1.056522e-01	ci left: 1.074209e-02	ci right 1.194837e-02	k: 1360	n:120000
KS ci ratio: 1.703908e-02	ci left: 3.034514e-01	ci right 3.086746e-01	k: 36727	n:120000
KIRREL   120000 perm   29 sec   (4076 perm/sec)   p_kst 3.060583e-01   p_cons 1.133333e-02   p_joint 4.598333e-02

Joint ci ratio: 5.286101e-02	ci left: 3.951078e-02	ci right 4.166362e-02	k: 5275	n:130000
Cons ci ratio: 1.018719e-01	ci left: 1.068751e-02	ci right 1.184214e-02	k: 1463	n:130000
KS ci ratio: 1.638209e-02	ci left: 3.032575e-01	ci right 3.082742e-01	k: 39749	n:130000
KIRREL   130000 perm   32 sec   (4014 perm/sec)   p_kst 3.057615e-01   p_cons 1.125385e-02   p_joint 4.057692e-02

Joint ci ratio: 5.220490e-02	ci left: 3.770270e-02	ci right 3.973075e-02	k: 5419	n:140000
Cons ci ratio: 9.960150e-02	ci left: 1.039751e-02	ci right 1.149431e-02	k: 1531	n:140000
KS ci ratio: 1.577892e-02	ci left: 3.035438e-01	ci right 3.083785e-01	k: 42834	n:140000
KIRREL   140000 perm   35 sec   (3953 perm/sec)   p_kst 3.059571e-01   p_cons 1.093571e-02   p_joint 3.870714e-02

Outputting figure to mutsig2_images.part000000000091/KIRREL.8_2334_140000_0.30596_0.010936_0.038707.png
                gene_name: KIRREL
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 36 percent done.
KIAA1529
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
Cons ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
KS ci ratio: 2.534987e-02	ci left: 6.960538e-01	ci right 7.140266e-01	k: 7051	n:10000
KIAA1529   10000 perm   2 sec   (5319 perm/sec)   p_kst 7.051000e-01   p_cons 5.722000e-01   p_joint 8.743000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1529.7_5093_10000_0.7051_0.5722_0.8743.png
                gene_name: KIAA1529
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 37 percent done.
KIF16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
KS ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KIF16B   10000 perm   2 sec   (5616 perm/sec)   p_kst 8.879000e-01   p_cons 9.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF16B.7_4058_10000_0.8879_0.968_1.png
                gene_name: KIF16B
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
KIF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
KS ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
KIF19   10000 perm   2 sec   (5445 perm/sec)   p_kst 9.150000e-01   p_cons 9.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF19.7_3077_10000_0.915_0.959_1.png
                gene_name: KIF19
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
KIF3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
Cons ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
KS ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
KIF3C   10000 perm   2 sec   (5631 perm/sec)   p_kst 6.527000e-01   p_cons 7.961000e-01   p_joint 9.602000e-01

Outputting figure to mutsig2_images.part000000000091/KIF3C.7_2414_10000_0.6527_0.7961_0.9602.png
                gene_name: KIF3C
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 41 percent done.
KL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
Cons ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
KS ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
KL   10000 perm   2 sec   (5887 perm/sec)   p_kst 4.623000e-01   p_cons 4.746000e-01   p_joint 5.467000e-01

Outputting figure to mutsig2_images.part000000000091/KL.7_3059_10000_0.4623_0.4746_0.5467.png
                gene_name: KL
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 43 percent done.
KIAA1841
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
Cons ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
KS ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
KIAA1841   10000 perm   2 sec   (5425 perm/sec)   p_kst 2.607000e-01   p_cons 6.800000e-01   p_joint 4.496000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1841.6_2337_10000_0.2607_0.68_0.4496.png
                gene_name: KIAA1841
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
KIF13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
Cons ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
KS ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
KIF13B   10000 perm   2 sec   (4820 perm/sec)   p_kst 1.684000e-01   p_cons 2.464000e-01   p_joint 2.548000e-01

Outputting figure to mutsig2_images.part000000000091/KIF13B.6_5641_10000_0.1684_0.2464_0.2548.png
                gene_name: KIF13B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 46 percent done.
KIF18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
Cons ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
KS ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KIF18A   10000 perm   2 sec   (6316 perm/sec)   p_kst 4.353000e-01   p_cons 1.628000e-01   p_joint 4.094000e-01

Outputting figure to mutsig2_images.part000000000091/KIF18A.6_2761_10000_0.4353_0.1628_0.4094.png
                gene_name: KIF18A
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 47 percent done.
KIF20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979036e-02	ci left: 7.888790e-01	ci right 8.047477e-01	k: 7969	n:10000
Cons ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
KS ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KIF20B   10000 perm   2 sec   (4974 perm/sec)   p_kst 6.503000e-01   p_cons 9.023000e-01   p_joint 7.969000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20B.6_5471_10000_0.6503_0.9023_0.7969.png
                gene_name: KIF20B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 49 percent done.
KIF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
KIF4A   10000 perm   2 sec   (5678 perm/sec)   p_kst 4.924000e-01   p_cons 6.883000e-01   p_joint 6.556000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4A.6_3819_10000_0.4924_0.6883_0.6556.png
                gene_name: KIF4A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 50 percent done.
KIF5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
KIF5C   10000 perm   2 sec   (5538 perm/sec)   p_kst 3.391000e-01   p_cons 4.190000e-01   p_joint 4.734000e-01

Outputting figure to mutsig2_images.part000000000091/KIF5C.6_2896_10000_0.3391_0.419_0.4734.png
                gene_name: KIF5C
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 51 percent done.
KIF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
KS ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
KIF7   10000 perm   2 sec   (5558 perm/sec)   p_kst 5.670000e-02   p_cons 1.732000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.373166e-01	ci left: 3.645585e-02	ci right 4.187918e-02	k: 782	n:20000
Cons ci ratio: 6.003736e-02	ci left: 1.703988e-01	ci right 1.809957e-01	k: 3513	n:20000
KS ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
KIF7   20000 perm   4 sec   (5029 perm/sec)   p_kst 5.490000e-02   p_cons 1.756500e-01   p_joint 3.910000e-02

Joint ci ratio: 1.071154e-01	ci left: 4.043988e-02	ci right 4.504921e-02	k: 1281	n:30000
Cons ci ratio: 4.709151e-02	ci left: 1.831961e-01	ci right 1.920645e-01	k: 5628	n:30000
KS ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
KIF7   30000 perm   6 sec   (4799 perm/sec)   p_kst 5.660000e-02   p_cons 1.876000e-01   p_joint 4.270000e-02

Joint ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
Cons ci ratio: 4.080708e-02	ci left: 1.836109e-01	ci right 1.912845e-01	k: 7497	n:40000
KS ci ratio: 7.994378e-02	ci left: 5.442883e-02	ci right 5.898580e-02	k: 2267	n:40000
KIF7   40000 perm   9 sec   (4648 perm/sec)   p_kst 5.667500e-02   p_cons 1.874250e-01   p_joint 4.445000e-02

Outputting figure to mutsig2_images.part000000000091/KIF7.6_4104_40000_0.056675_0.18743_0.04445.png
                gene_name: KIF7
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.047 

Current progress: 53 percent done.
KIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
KIT   10000 perm   2 sec   (5896 perm/sec)   p_kst 8.122000e-01   p_cons 5.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIT.6_3015_10000_0.8122_0.5796_1.png
                gene_name: KIT
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
KLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
Cons ci ratio: 1.471055e-02	ci left: 8.699939e-01	ci right 8.829859e-01	k: 8766	n:10000
KS ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
KLB   10000 perm   2 sec   (5445 perm/sec)   p_kst 4.471000e-01   p_cons 8.766000e-01   p_joint 7.401000e-01

Outputting figure to mutsig2_images.part000000000091/KLB.6_3155_10000_0.4471_0.8766_0.7401.png
                gene_name: KLB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 56 percent done.
KIAA1958
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
Cons ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
KS ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
KIAA1958   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.344000e-01   p_cons 2.691000e-01   p_joint 2.789000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1958.5_2163_10000_0.2344_0.2691_0.2789.png
                gene_name: KIAA1958
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
KIF24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
Cons ci ratio: 5.999634e-03	ci left: 9.740817e-01	ci right 9.800359e-01	k: 9772	n:10000
KS ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KIF24   10000 perm   2 sec   (5612 perm/sec)   p_kst 6.883000e-01   p_cons 9.772000e-01   p_joint 8.816000e-01

Outputting figure to mutsig2_images.part000000000091/KIF24.5_4155_10000_0.6883_0.9772_0.8816.png
                gene_name: KIF24
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 59 percent done.
KIFC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
Cons ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
KS ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
KIFC3   10000 perm   2 sec   (5854 perm/sec)   p_kst 5.491000e-01   p_cons 4.080000e-02   p_joint 1.904000e-01

Joint ci ratio: 5.905103e-02	ci left: 1.751915e-01	ci right 1.859015e-01	k: 3610	n:20000
Cons ci ratio: 1.365920e-01	ci left: 3.684265e-02	ci right 4.229226e-02	k: 790	n:20000
KS ci ratio: 2.468572e-02	ci left: 5.507337e-01	ci right 5.645495e-01	k: 11153	n:20000
KIFC3   20000 perm   4 sec   (5297 perm/sec)   p_kst 5.576500e-01   p_cons 3.950000e-02   p_joint 1.805000e-01

Joint ci ratio: 5.214748e-02	ci left: 1.543509e-01	ci right 1.626487e-01	k: 4754	n:30000
Cons ci ratio: 1.120946e-01	ci left: 3.696711e-02	ci right 4.138937e-02	k: 1174	n:30000
KS ci ratio: 2.011745e-02	ci left: 5.529589e-01	ci right 5.642297e-01	k: 16758	n:30000
KIFC3   30000 perm   6 sec   (5095 perm/sec)   p_kst 5.586000e-01   p_cons 3.913333e-02   p_joint 1.584667e-01

Joint ci ratio: 4.283817e-02	ci left: 1.693789e-01	ci right 1.768186e-01	k: 6923	n:40000
Cons ci ratio: 9.598766e-02	ci left: 3.810059e-02	ci right 4.196655e-02	k: 1600	n:40000
KS ci ratio: 1.739857e-02	ci left: 5.543930e-01	ci right 5.641484e-01	k: 22371	n:40000
KIFC3   40000 perm   8 sec   (4954 perm/sec)   p_kst 5.592750e-01   p_cons 4.000000e-02   p_joint 1.730750e-01

Outputting figure to mutsig2_images.part000000000091/KIFC3.5_2583_40000_0.55927_0.04_0.17308.png
                gene_name: KIFC3
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
KIRREL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
Cons ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
KS ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KIRREL2   10000 perm   2 sec   (6391 perm/sec)   p_kst 4.162000e-01   p_cons 2.284000e-01   p_joint 3.612000e-01

Outputting figure to mutsig2_images.part000000000091/KIRREL2.5_2231_10000_0.4162_0.2284_0.3612.png
                gene_name: KIRREL2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
KIAA1598
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
Cons ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
KS ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
KIAA1598   10000 perm   2 sec   (6153 perm/sec)   p_kst 6.803000e-01   p_cons 5.933000e-01   p_joint 9.072000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1598.4_1964_10000_0.6803_0.5933_0.9072.png
                gene_name: KIAA1598
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 63 percent done.
KIAA1715
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
Cons ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
KS ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
KIAA1715   10000 perm   1 sec   (6813 perm/sec)   p_kst 4.140000e-01   p_cons 9.823000e-01   p_joint 6.188000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1715.4_1335_10000_0.414_0.9823_0.6188.png
                gene_name: KIAA1715
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 64 percent done.
KIF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
Cons ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KIF11   10000 perm   2 sec   (6012 perm/sec)   p_kst 1.340000e-02   p_cons 7.304000e-01   p_joint 3.490000e-02

Joint ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
Cons ci ratio: 1.651748e-02	ci left: 7.317962e-01	ci right 7.440346e-01	k: 14759	n:20000
KS ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
KIF11   20000 perm   4 sec   (5428 perm/sec)   p_kst 1.425000e-02   p_cons 7.379500e-01   p_joint 2.515000e-02

Joint ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
Cons ci ratio: 1.349292e-02	ci left: 7.327499e-01	ci right 7.427374e-01	k: 22133	n:30000
KS ci ratio: 1.848616e-01	ci left: 1.340044e-02	ci right 1.616136e-02	k: 442	n:30000
KIF11   30000 perm   6 sec   (5191 perm/sec)   p_kst 1.473333e-02   p_cons 7.377667e-01   p_joint 3.453333e-02

Joint ci ratio: 1.450753e-01	ci left: 1.662325e-02	ci right 1.924740e-02	k: 716	n:40000
Cons ci ratio: 1.167140e-02	ci left: 7.338873e-01	ci right 7.425281e-01	k: 29529	n:40000
KS ci ratio: 1.582918e-01	ci left: 1.390368e-02	ci right 1.631746e-02	k: 603	n:40000
KIF11   40000 perm   8 sec   (5038 perm/sec)   p_kst 1.507500e-02   p_cons 7.382250e-01   p_joint 1.790000e-02

Joint ci ratio: 1.013676e-01	ci left: 2.756604e-02	ci right 3.052897e-02	k: 1451	n:50000
Cons ci ratio: 1.068477e-02	ci left: 7.252215e-01	ci right 7.330319e-01	k: 36457	n:50000
KS ci ratio: 1.403589e-01	ci left: 1.428095e-02	ci right 1.645584e-02	k: 767	n:50000
KIF11   50000 perm   10 sec   (4903 perm/sec)   p_kst 1.534000e-02   p_cons 7.291400e-01   p_joint 2.902000e-02

Joint ci ratio: 9.600773e-02	ci left: 2.573395e-02	ci right 2.834540e-02	k: 1621	n:60000
Cons ci ratio: 9.760163e-03	ci left: 7.253070e-01	ci right 7.324375e-01	k: 43733	n:60000
KS ci ratio: 1.272630e-01	ci left: 1.457515e-02	ci right 1.657210e-02	k: 933	n:60000
KIF11   60000 perm   13 sec   (4797 perm/sec)   p_kst 1.555000e-02   p_cons 7.288833e-01   p_joint 2.701667e-02

Joint ci ratio: 8.962702e-02	ci left: 2.540651e-02	ci right 2.780438e-02	k: 1861	n:70000
Cons ci ratio: 9.024024e-03	ci left: 7.261066e-01	ci right 7.327029e-01	k: 51059	n:70000
KS ci ratio: 1.192008e-01	ci left: 1.430665e-02	ci right 1.613386e-02	k: 1064	n:70000
KIF11   70000 perm   15 sec   (4697 perm/sec)   p_kst 1.520000e-02   p_cons 7.294143e-01   p_joint 2.658571e-02

Joint ci ratio: 9.121985e-02	ci left: 2.153231e-02	ci right 2.360252e-02	k: 1804	n:80000
Cons ci ratio: 8.465304e-03	ci left: 7.251905e-01	ci right 7.313680e-01	k: 58263	n:80000
KS ci ratio: 1.111846e-01	ci left: 1.444865e-02	ci right 1.616176e-02	k: 1223	n:80000
KIF11   80000 perm   17 sec   (4609 perm/sec)   p_kst 1.528750e-02   p_cons 7.282875e-01   p_joint 2.255000e-02

Joint ci ratio: 7.793051e-02	ci left: 2.627777e-02	ci right 2.841950e-02	k: 2460	n:90000
Cons ci ratio: 7.982262e-03	ci left: 7.253140e-01	ci right 7.311379e-01	k: 65541	n:90000
KS ci ratio: 1.052537e-01	ci left: 1.437831e-02	ci right 1.598650e-02	k: 1365	n:90000
KIF11   90000 perm   20 sec   (4523 perm/sec)   p_kst 1.516667e-02   p_cons 7.282333e-01   p_joint 2.733333e-02

Joint ci ratio: 7.357867e-02	ci left: 2.658353e-02	ci right 2.862400e-02	k: 2759	n:100000
Cons ci ratio: 7.567157e-03	ci left: 7.257520e-01	ci right 7.312747e-01	k: 72852	n:100000
KS ci ratio: 9.951274e-02	ci left: 1.451906e-02	ci right 1.604924e-02	k: 1527	n:100000
KIF11   100000 perm   22 sec   (4451 perm/sec)   p_kst 1.527000e-02   p_cons 7.285200e-01   p_joint 2.759000e-02

Outputting figure to mutsig2_images.part000000000091/KIF11.4_3259_100000_0.01527_0.72852_0.02759.png
                gene_name: KIF11
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 66 percent done.
KIF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
Cons ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
KIF15   10000 perm   2 sec   (5700 perm/sec)   p_kst 7.469000e-01   p_cons 1.664000e-01   p_joint 4.755000e-01

Outputting figure to mutsig2_images.part000000000091/KIF15.4_4307_10000_0.7469_0.1664_0.4755.png
                gene_name: KIF15
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 67 percent done.
KIF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
Cons ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
KS ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
KIF17   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.687000e-01   p_cons 7.499000e-01   p_joint 7.481000e-01

Outputting figure to mutsig2_images.part000000000091/KIF17.4_3150_10000_0.5687_0.7499_0.7481.png
                gene_name: KIF17
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 69 percent done.
KIF18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
Cons ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
KS ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
KIF18B   10000 perm   2 sec   (6176 perm/sec)   p_kst 5.911000e-01   p_cons 4.000000e-02   p_joint 1.274000e-01

Joint ci ratio: 6.831624e-02	ci left: 1.364999e-01	ci right 1.462047e-01	k: 2826	n:20000
Cons ci ratio: 1.370436e-01	ci left: 3.660089e-02	ci right 4.203409e-02	k: 785	n:20000
KS ci ratio: 2.338820e-02	ci left: 5.772324e-01	ci right 5.909432e-01	k: 11682	n:20000
KIF18B   20000 perm   4 sec   (5579 perm/sec)   p_kst 5.841000e-01   p_cons 3.925000e-02   p_joint 1.413000e-01

Joint ci ratio: 7.607835e-02	ci left: 7.819866e-02	ci right 8.441604e-02	k: 2438	n:30000
Cons ci ratio: 1.163333e-01	ci left: 3.434145e-02	ci right 3.861558e-02	k: 1093	n:30000
KS ci ratio: 1.922280e-02	ci left: 5.752923e-01	ci right 5.864920e-01	k: 17427	n:30000
KIF18B   30000 perm   6 sec   (5347 perm/sec)   p_kst 5.809000e-01   p_cons 3.643333e-02   p_joint 8.126667e-02

Joint ci ratio: 6.221900e-02	ci left: 8.745928e-02	ci right 9.310037e-02	k: 3610	n:40000
Cons ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
KS ci ratio: 1.662197e-02	ci left: 5.767976e-01	ci right 5.864906e-01	k: 23266	n:40000
KIF18B   40000 perm   8 sec   (5189 perm/sec)   p_kst 5.816500e-01   p_cons 3.680000e-02   p_joint 9.025000e-02

Joint ci ratio: 5.799586e-02	ci left: 8.128680e-02	ci right 8.616166e-02	k: 4185	n:50000
Cons ci ratio: 8.948562e-02	ci left: 3.530368e-02	ci right 3.863036e-02	k: 1847	n:50000
KS ci ratio: 1.492565e-02	ci left: 5.753990e-01	ci right 5.840718e-01	k: 28987	n:50000
KIF18B   50000 perm   10 sec   (5055 perm/sec)   p_kst 5.797400e-01   p_cons 3.694000e-02   p_joint 8.370000e-02

Outputting figure to mutsig2_images.part000000000091/KIF18B.4_2627_50000_0.57974_0.03694_0.0837.png
                gene_name: KIF18B
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 70 percent done.
KIF20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
Cons ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
KIF20A   10000 perm   2 sec   (6178 perm/sec)   p_kst 8.385000e-01   p_cons 3.756000e-01   p_joint 7.915000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20A.4_2745_10000_0.8385_0.3756_0.7915.png
                gene_name: KIF20A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 71 percent done.
KIF2C
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
KIF2C   10000 perm   2 sec   (6414 perm/sec)   p_kst 8.152000e-01   p_cons 4.207000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2C.3_2262_10000_0.8152_0.4207_0.7275.png
                gene_name: KIF2C
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 73 percent done.
KIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
Cons ci ratio: 2.032079e-02	ci left: 7.800585e-01	ci right 7.961733e-01	k: 7882	n:10000
KS ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
KIF3B   10000 perm   1 sec   (6676 perm/sec)   p_kst 5.135000e-01   p_cons 7.882000e-01   p_joint 5.796000e-01

Outputting figure to mutsig2_images.part000000000091/KIF3B.4_2276_10000_0.5135_0.7882_0.5796.png
                gene_name: KIF3B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 74 percent done.
KIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
Cons ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KIN   10000 perm   1 sec   (6798 perm/sec)   p_kst 1.410000e-02   p_cons 1.084000e-01   p_joint 5.850000e-02

Joint ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
Cons ci ratio: 7.941166e-02	ci left: 1.042709e-01	ci right 1.129432e-01	k: 2171	n:20000
KS ci ratio: 2.434210e-01	ci left: 1.124125e-02	ci right 1.440275e-02	k: 255	n:20000
KIN   20000 perm   3 sec   (5980 perm/sec)   p_kst 1.275000e-02   p_cons 1.085500e-01   p_joint 2.295000e-02

Joint ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
Cons ci ratio: 6.457325e-02	ci left: 1.058563e-01	ci right 1.129529e-01	k: 3281	n:30000
KS ci ratio: 1.995451e-01	ci left: 1.143190e-02	ci right 1.399710e-02	k: 380	n:30000
KIN   30000 perm   5 sec   (5727 perm/sec)   p_kst 1.266667e-02   p_cons 1.093667e-01   p_joint 1.106667e-02

Joint ci ratio: 1.592312e-01	ci left: 1.373554e-02	ci right 1.613563e-02	k: 596	n:40000
Cons ci ratio: 5.608067e-02	ci left: 1.057891e-01	ci right 1.119178e-01	k: 4353	n:40000
KS ci ratio: 1.670756e-01	ci left: 1.243993e-02	ci right 1.473149e-02	k: 542	n:40000
KIN   40000 perm   7 sec   (5548 perm/sec)   p_kst 1.355000e-02   p_cons 1.088250e-01   p_joint 1.490000e-02

Joint ci ratio: 1.987491e-01	ci left: 6.952512e-03	ci right 8.505461e-03	k: 385	n:50000
Cons ci ratio: 5.018345e-02	ci left: 1.060240e-01	ci right 1.115015e-01	k: 5437	n:50000
KS ci ratio: 1.496330e-01	ci left: 1.252605e-02	ci right 1.457100e-02	k: 676	n:50000
KIN   50000 perm   9 sec   (5396 perm/sec)   p_kst 1.352000e-02   p_cons 1.087400e-01   p_joint 7.700000e-03

Joint ci ratio: 1.872655e-01	ci left: 6.570865e-03	ci right 7.944111e-03	k: 434	n:60000
Cons ci ratio: 4.562146e-02	ci left: 1.070615e-01	ci right 1.120763e-01	k: 6573	n:60000
KS ci ratio: 1.368865e-01	ci left: 1.255965e-02	ci right 1.442118e-02	k: 808	n:60000
KIN   60000 perm   11 sec   (5268 perm/sec)   p_kst 1.346667e-02   p_cons 1.095500e-01   p_joint 7.233333e-03

Joint ci ratio: 1.743285e-01	ci left: 6.546031e-03	ci right 7.809624e-03	k: 501	n:70000
Cons ci ratio: 4.213762e-02	ci left: 1.077053e-01	ci right 1.123556e-01	k: 7701	n:70000
KS ci ratio: 1.269256e-01	ci left: 1.258898e-02	ci right 1.430885e-02	k: 940	n:70000
KIN   70000 perm   14 sec   (5156 perm/sec)   p_kst 1.342857e-02   p_cons 1.100143e-01   p_joint 7.157143e-03

Joint ci ratio: 1.671860e-01	ci left: 6.254197e-03	ci right 7.407004e-03	k: 545	n:80000
Cons ci ratio: 3.942695e-02	ci left: 1.078026e-01	ci right 1.121508e-01	k: 8797	n:80000
KS ci ratio: 1.187522e-01	ci left: 1.263894e-02	ci right 1.424663e-02	k: 1074	n:80000
KIN   80000 perm   16 sec   (5065 perm/sec)   p_kst 1.342500e-02   p_cons 1.099625e-01   p_joint 6.812500e-03

Joint ci ratio: 1.307467e-01	ci left: 9.241956e-03	ci right 1.054548e-02	k: 889	n:90000
Cons ci ratio: 3.712944e-02	ci left: 1.081502e-01	ci right 1.122527e-01	k: 9917	n:90000
KS ci ratio: 1.119314e-01	ci left: 1.269138e-02	ci right 1.420689e-02	k: 1209	n:90000
KIN   90000 perm   18 sec   (4975 perm/sec)   p_kst 1.343333e-02   p_cons 1.101889e-01   p_joint 9.877778e-03

Joint ci ratio: 1.275275e-01	ci left: 8.762760e-03	ci right 9.965956e-03	k: 935	n:100000
Cons ci ratio: 3.524566e-02	ci left: 1.081365e-01	ci right 1.120261e-01	k: 11007	n:100000
KS ci ratio: 1.056884e-01	ci left: 1.285231e-02	ci right 1.429611e-02	k: 1356	n:100000
KIN   100000 perm   20 sec   (4891 perm/sec)   p_kst 1.356000e-02   p_cons 1.100700e-01   p_joint 9.350000e-03

Joint ci ratio: 1.443046e-01	ci left: 6.182580e-03	ci right 7.152797e-03	k: 732	n:110000
Cons ci ratio: 3.264354e-02	ci left: 1.140049e-01	ci right 1.177972e-01	k: 12748	n:110000
KS ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
KIN   110000 perm   23 sec   (4806 perm/sec)   p_kst 1.352727e-02   p_cons 1.158909e-01   p_joint 6.654545e-03

Joint ci ratio: 1.387420e-01	ci left: 6.149656e-03	ci right 7.074430e-03	k: 792	n:120000
Cons ci ratio: 3.139827e-02	ci left: 1.131505e-01	ci right 1.167681e-01	k: 13794	n:120000
KS ci ratio: 9.670290e-02	ci left: 1.285467e-02	ci right 1.416900e-02	k: 1620	n:120000
KIN   120000 perm   25 sec   (4725 perm/sec)   p_kst 1.350000e-02   p_cons 1.149500e-01   p_joint 6.600000e-03

Joint ci ratio: 1.259169e-01	ci left: 6.933831e-03	ci right 7.872959e-03	k: 961	n:130000
Cons ci ratio: 3.014665e-02	ci left: 1.133546e-01	ci right 1.168318e-01	k: 14961	n:130000
KS ci ratio: 9.283106e-02	ci left: 1.290225e-02	ci right 1.416574e-02	k: 1758	n:130000
KIN   130000 perm   28 sec   (4647 perm/sec)   p_kst 1.352308e-02   p_cons 1.150846e-01   p_joint 7.392308e-03

Joint ci ratio: 1.056604e-01	ci left: 9.221029e-03	ci right 1.025657e-02	k: 1362	n:140000
Cons ci ratio: 2.901132e-02	ci left: 1.136882e-01	ci right 1.170420e-01	k: 16150	n:140000
KS ci ratio: 8.946163e-02	ci left: 1.292297e-02	ci right 1.414016e-02	k: 1893	n:140000
KIN   140000 perm   31 sec   (4569 perm/sec)   p_kst 1.352143e-02   p_cons 1.153571e-01   p_joint 9.728571e-03

Joint ci ratio: 1.049592e-01	ci left: 8.729507e-03	ci right 9.702939e-03	k: 1381	n:150000
Cons ci ratio: 2.798798e-02	ci left: 1.140324e-01	ci right 1.172758e-01	k: 17347	n:150000
KS ci ratio: 8.658587e-02	ci left: 1.289598e-02	ci right 1.406960e-02	k: 2021	n:150000
KIN   150000 perm   33 sec   (4488 perm/sec)   p_kst 1.347333e-02   p_cons 1.156467e-01   p_joint 9.206667e-03

Joint ci ratio: 1.009762e-01	ci left: 8.859829e-03	ci right 9.808079e-03	k: 1492	n:160000
Cons ci ratio: 2.711046e-02	ci left: 1.139999e-01	ci right 1.171391e-01	k: 18490	n:160000
KS ci ratio: 8.351905e-02	ci left: 1.301369e-02	ci right 1.415403e-02	k: 2172	n:160000
KIN   160000 perm   36 sec   (4407 perm/sec)   p_kst 1.357500e-02   p_cons 1.155625e-01   p_joint 9.325000e-03

Joint ci ratio: 9.815866e-02	ci left: 8.837679e-03	ci right 9.755643e-03	k: 1579	n:170000
Cons ci ratio: 2.635161e-02	ci left: 1.136567e-01	ci right 1.166976e-01	k: 19579	n:170000
KS ci ratio: 8.091555e-02	ci left: 1.306632e-02	ci right 1.417389e-02	k: 2314	n:170000
KIN   170000 perm   39 sec   (4330 perm/sec)   p_kst 1.361176e-02   p_cons 1.151706e-01   p_joint 9.288235e-03

Outputting figure to mutsig2_images.part000000000091/KIN.4_1234_170000_0.013612_0.11517_0.0092882.png
                gene_name: KIN
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.0093 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0098 

Current progress: 76 percent done.
KIR2DL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
KIR2DL1   10000 perm   1 sec   (7291 perm/sec)   p_kst 3.915000e-01   p_cons 4.920000e-02   p_joint 2.546000e-01

Joint ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
Cons ci ratio: 1.227707e-01	ci left: 4.551508e-02	ci right 5.151706e-02	k: 969	n:20000
KS ci ratio: 3.442701e-02	ci left: 3.864712e-01	ci right 4.000599e-01	k: 7865	n:20000
KIR2DL1   20000 perm   3 sec   (6451 perm/sec)   p_kst 3.932500e-01   p_cons 4.845000e-02   p_joint 1.259000e-01

Joint ci ratio: 6.097023e-02	ci left: 1.173955e-01	ci right 1.248114e-01	k: 3632	n:30000
Cons ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
KS ci ratio: 2.809181e-02	ci left: 3.880323e-01	ci right 3.991217e-01	k: 11807	n:30000
KIR2DL1   30000 perm   5 sec   (6152 perm/sec)   p_kst 3.935667e-01   p_cons 4.833333e-02   p_joint 1.210667e-01

Joint ci ratio: 5.006387e-02	ci left: 1.295628e-01	ci right 1.362406e-01	k: 5315	n:40000
Cons ci ratio: 8.688362e-02	ci left: 4.631721e-02	ci right 5.054866e-02	k: 1936	n:40000
KS ci ratio: 2.431672e-02	ci left: 3.890072e-01	ci right 3.986082e-01	k: 15752	n:40000
KIR2DL1   40000 perm   7 sec   (5953 perm/sec)   p_kst 3.938000e-01   p_cons 4.840000e-02   p_joint 1.328750e-01

Outputting figure to mutsig2_images.part000000000091/KIR2DL1.4_1079_40000_0.3938_0.0484_0.13287.png
                gene_name: KIR2DL1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 77 percent done.
KIR2DS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KIR2DS4   10000 perm   1 sec   (7070 perm/sec)   p_kst 1.080000e-02   p_cons 4.925000e-01   p_joint 2.840000e-02

Joint ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
Cons ci ratio: 2.828492e-02	ci left: 4.828988e-01	ci right 4.968041e-01	k: 9797	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KIR2DS4   20000 perm   3 sec   (6303 perm/sec)   p_kst 1.220000e-02   p_cons 4.898500e-01   p_joint 3.615000e-02

Joint ci ratio: 9.560218e-02	ci left: 5.052416e-02	ci right 5.562949e-02	k: 1591	n:30000
Cons ci ratio: 2.328617e-02	ci left: 4.800627e-01	ci right 4.914068e-01	k: 14572	n:30000
KS ci ratio: 2.017009e-01	ci left: 1.117848e-02	ci right 1.371725e-02	k: 372	n:30000
KIR2DS4   30000 perm   5 sec   (5958 perm/sec)   p_kst 1.240000e-02   p_cons 4.857333e-01   p_joint 5.303333e-02

Joint ci ratio: 9.684146e-02	ci left: 3.744124e-02	ci right 4.127600e-02	k: 1573	n:40000
Cons ci ratio: 1.905226e-02	ci left: 5.092387e-01	ci right 5.190593e-01	k: 20566	n:40000
KS ci ratio: 1.776565e-01	ci left: 1.095598e-02	ci right 1.311572e-02	k: 480	n:40000
KIR2DS4   40000 perm   7 sec   (5754 perm/sec)   p_kst 1.200000e-02   p_cons 5.141500e-01   p_joint 3.932500e-02

Joint ci ratio: 7.716438e-02	ci left: 4.718299e-02	ci right 5.098958e-02	k: 2453	n:50000
Cons ci ratio: 1.703519e-02	ci left: 5.099285e-01	ci right 5.187099e-01	k: 25716	n:50000
KS ci ratio: 1.626742e-01	ci left: 1.054551e-02	ci right 1.243185e-02	k: 573	n:50000
KIR2DS4   50000 perm   9 sec   (5591 perm/sec)   p_kst 1.146000e-02   p_cons 5.143200e-01   p_joint 4.906000e-02

Joint ci ratio: 1.046513e-01	ci left: 2.165292e-02	ci right 2.406021e-02	k: 1370	n:60000
Cons ci ratio: 1.554177e-02	ci left: 5.106087e-01	ci right 5.186233e-01	k: 30877	n:60000
KS ci ratio: 1.483701e-01	ci left: 1.064618e-02	ci right 1.236822e-02	k: 689	n:60000
KIR2DS4   60000 perm   11 sec   (5452 perm/sec)   p_kst 1.148333e-02   p_cons 5.146167e-01   p_joint 2.283333e-02

Joint ci ratio: 9.616784e-02	ci left: 2.206957e-02	ci right 2.431305e-02	k: 1622	n:70000
Cons ci ratio: 1.441536e-02	ci left: 5.099898e-01	ci right 5.174091e-01	k: 35959	n:70000
KS ci ratio: 1.365938e-01	ci left: 1.083373e-02	ci right 1.243570e-02	k: 813	n:70000
KIR2DS4   70000 perm   13 sec   (5322 perm/sec)   p_kst 1.161429e-02   p_cons 5.137000e-01   p_joint 2.317143e-02

Joint ci ratio: 9.509168e-02	ci left: 1.981001e-02	ci right 2.179996e-02	k: 1663	n:80000
Cons ci ratio: 1.350429e-02	ci left: 5.094922e-01	ci right 5.164318e-01	k: 41037	n:80000
KS ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
KIR2DS4   80000 perm   15 sec   (5210 perm/sec)   p_kst 1.146250e-02   p_cons 5.129625e-01   p_joint 2.078750e-02

Joint ci ratio: 8.764245e-02	ci left: 2.079060e-02	ci right 2.270707e-02	k: 1956	n:90000
Cons ci ratio: 1.271321e-02	ci left: 5.104287e-01	ci right 5.169705e-01	k: 46233	n:90000
KS ci ratio: 1.207903e-01	ci left: 1.086755e-02	ci right 1.227531e-02	k: 1040	n:90000
KIR2DS4   90000 perm   18 sec   (5108 perm/sec)   p_kst 1.155556e-02   p_cons 5.137000e-01   p_joint 2.173333e-02

Joint ci ratio: 7.095164e-02	ci left: 2.856805e-02	ci right 3.067935e-02	k: 2961	n:100000
Cons ci ratio: 1.206059e-02	ci left: 5.106068e-01	ci right 5.168124e-01	k: 51371	n:100000
KS ci ratio: 1.151301e-01	ci left: 1.079980e-02	ci right 1.212877e-02	k: 1145	n:100000
KIR2DS4   100000 perm   20 sec   (5019 perm/sec)   p_kst 1.145000e-02   p_cons 5.137100e-01   p_joint 2.961000e-02

Joint ci ratio: 7.822710e-02	ci left: 2.144440e-02	ci right 2.319909e-02	k: 2454	n:110000
Cons ci ratio: 1.214660e-02	ci left: 4.833786e-01	ci right 4.892949e-01	k: 53497	n:110000
KS ci ratio: 1.097987e-01	ci left: 1.082522e-02	ci right 1.209164e-02	k: 1259	n:110000
KIR2DS4   110000 perm   22 sec   (4929 perm/sec)   p_kst 1.144545e-02   p_cons 4.863364e-01   p_joint 2.230909e-02

Joint ci ratio: 8.626437e-02	ci left: 1.618639e-02	ci right 1.765375e-02	k: 2029	n:120000
Cons ci ratio: 1.163733e-02	ci left: 4.831683e-01	ci right 4.888323e-01	k: 58320	n:120000
KS ci ratio: 1.049139e-01	ci left: 1.089630e-02	ci right 1.211082e-02	k: 1379	n:120000
KIR2DS4   120000 perm   25 sec   (4837 perm/sec)   p_kst 1.149167e-02   p_cons 4.860000e-01   p_joint 1.690833e-02

Joint ci ratio: 8.168247e-02	ci left: 1.669615e-02	ci right 1.812550e-02	k: 2262	n:130000
Cons ci ratio: 1.116600e-02	ci left: 4.839410e-01	ci right 4.893827e-01	k: 63266	n:130000
KS ci ratio: 1.012443e-01	ci left: 1.082249e-02	ci right 1.198408e-02	k: 1481	n:130000
KIR2DS4   130000 perm   27 sec   (4753 perm/sec)   p_kst 1.139231e-02   p_cons 4.866615e-01   p_joint 1.740000e-02

Joint ci ratio: 8.388894e-02	ci left: 1.471249e-02	ci right 1.600770e-02	k: 2149	n:140000
Cons ci ratio: 1.076162e-02	ci left: 4.839571e-01	ci right 4.892006e-01	k: 68121	n:140000
KS ci ratio: 9.917692e-02	ci left: 1.048808e-02	ci right 1.158945e-02	k: 1544	n:140000
KIR2DS4   140000 perm   30 sec   (4672 perm/sec)   p_kst 1.102857e-02   p_cons 4.865786e-01   p_joint 1.535000e-02

Outputting figure to mutsig2_images.part000000000091/KIR2DS4.4_925_140000_0.011029_0.48658_0.01535.png
                gene_name: KIR2DS4
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 79 percent done.
KIAA1539
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
KS ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
KIAA1539   10000 perm   1 sec   (6930 perm/sec)   p_kst 9.273000e-01   p_cons 5.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1539.3_1645_10000_0.9273_0.532_1.png
                gene_name: KIAA1539
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
KIFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.953145e-02	ci left: 6.283912e-01	ci right 6.473284e-01	k: 6379	n:10000
Cons ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
KS ci ratio: 2.465067e-02	ci left: 7.076552e-01	ci right 7.254185e-01	k: 7166	n:10000
KIFC1   10000 perm   2 sec   (6562 perm/sec)   p_kst 7.166000e-01   p_cons 2.567000e-01   p_joint 6.379000e-01

Outputting figure to mutsig2_images.part000000000091/KIFC1.3_2066_10000_0.7166_0.2567_0.6379.png
                gene_name: KIFC1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
KIAA1586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
KIAA1586   10000 perm   1 sec   (6728 perm/sec)   p_kst 4.191000e-01   p_cons 3.427000e-01   p_joint 6.054000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1586.2_2380_10000_0.4191_0.3427_0.6054.png
                gene_name: KIAA1586
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 83 percent done.
KIAA1609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
Cons ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
KS ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KIAA1609   10000 perm   1 sec   (7432 perm/sec)   p_kst 8.921000e-01   p_cons 8.520000e-02   p_joint 1.326000e-01

Joint ci ratio: 6.888482e-02	ci left: 1.345289e-01	ci right 1.441763e-01	k: 2786	n:20000
Cons ci ratio: 9.174025e-02	ci left: 7.979973e-02	ci right 8.752182e-02	k: 1672	n:20000
KS ci ratio: 9.628676e-03	ci left: 8.879724e-01	ci right 8.966132e-01	k: 17847	n:20000
KIAA1609   20000 perm   3 sec   (6540 perm/sec)   p_kst 8.923500e-01   p_cons 8.360000e-02   p_joint 1.393000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1609.2_1399_20000_0.89235_0.0836_0.1393.png
                gene_name: KIAA1609
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 84 percent done.
KIAA1644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
Cons ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
KIAA1644   10000 perm   1 sec   (8224 perm/sec)   p_kst 4.097000e-01   p_cons 8.203000e-01   p_joint 9.083000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1644.2_616_10000_0.4097_0.8203_0.9083.png
                gene_name: KIAA1644
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 86 percent done.
KIAA1804
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.562496e-02	ci left: 4.148854e-01	ci right 4.343585e-01	k: 4246	n:10000
Cons ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
KS ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
KIAA1804   10000 perm   1 sec   (6682 perm/sec)   p_kst 5.027000e-01   p_cons 3.008000e-01   p_joint 4.246000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1804.2_3151_10000_0.5027_0.3008_0.4246.png
                gene_name: KIAA1804
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 87 percent done.
KIAA1826
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
Cons ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
KS ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KIAA1826   10000 perm   1 sec   (7502 perm/sec)   p_kst 4.685000e-01   p_cons 6.207000e-01   p_joint 9.648000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1826.2_1046_10000_0.4685_0.6207_0.9648.png
                gene_name: KIAA1826
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
KIAA1949
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
KS ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
KIAA1949   10000 perm   1 sec   (7158 perm/sec)   p_kst 4.959000e-01   p_cons 8.947000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1949.2_1854_10000_0.4959_0.8947_1.png
                gene_name: KIAA1949
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
KIF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
KIF14   10000 perm   2 sec   (6017 perm/sec)   p_kst 6.748000e-01   p_cons 3.529000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF14.2_5063_10000_0.6748_0.3529_1.png
                gene_name: KIF14
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
KIF22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
Cons ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
KIF22   10000 perm   1 sec   (7096 perm/sec)   p_kst 5.886000e-01   p_cons 2.310000e-02   p_joint 9.377000e-01

Joint ci ratio: 1.431931e-02	ci left: 7.836318e-01	ci right 7.949839e-01	k: 15787	n:20000
Cons ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
KS ci ratio: 2.306001e-02	ci left: 5.840983e-01	ci right 5.977753e-01	k: 11819	n:20000
KIF22   20000 perm   3 sec   (6240 perm/sec)   p_kst 5.909500e-01   p_cons 2.345000e-02   p_joint 7.893500e-01

Joint ci ratio: 3.192044e-02	ci left: 3.291606e-01	ci right 3.398715e-01	k: 10035	n:30000
Cons ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
KS ci ratio: 1.883072e-02	ci left: 5.853111e-01	ci right 5.964713e-01	k: 17727	n:30000
KIF22   30000 perm   5 sec   (5836 perm/sec)   p_kst 5.909000e-01   p_cons 2.353333e-02   p_joint 3.345000e-01

Joint ci ratio: 2.714897e-02	ci left: 3.379483e-01	ci right 3.472746e-01	k: 13704	n:40000
Cons ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
KS ci ratio: 1.627096e-02	ci left: 5.871647e-01	ci right 5.968219e-01	k: 23680	n:40000
KIF22   40000 perm   7 sec   (5672 perm/sec)   p_kst 5.920000e-01   p_cons 2.355000e-02   p_joint 3.426000e-01

Joint ci ratio: 2.172972e-02	ci left: 3.899528e-01	ci right 3.985395e-01	k: 19712	n:50000
Cons ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
KS ci ratio: 1.453340e-02	ci left: 5.883380e-01	ci right 5.969712e-01	k: 29633	n:50000
KIF22   50000 perm   9 sec   (5532 perm/sec)   p_kst 5.926600e-01   p_cons 2.314000e-02   p_joint 3.942400e-01

Joint ci ratio: 1.631373e-02	ci left: 4.863755e-01	ci right 4.943921e-01	k: 29423	n:60000
Cons ci ratio: 1.042628e-01	ci left: 2.181533e-02	ci right 2.423111e-02	k: 1380	n:60000
KS ci ratio: 1.330135e-02	ci left: 5.874707e-01	ci right 5.953538e-01	k: 35485	n:60000
KIF22   60000 perm   11 sec   (5372 perm/sec)   p_kst 5.914167e-01   p_cons 2.300000e-02   p_joint 4.903833e-01

Joint ci ratio: 1.419601e-02	ci left: 5.176486e-01	ci right 5.250639e-01	k: 36495	n:70000
Cons ci ratio: 9.550724e-02	ci left: 2.237649e-02	ci right 2.463467e-02	k: 1644	n:70000
KS ci ratio: 1.232313e-02	ci left: 5.874329e-01	ci right 5.947310e-01	k: 41376	n:70000
KIF22   70000 perm   13 sec   (5264 perm/sec)   p_kst 5.910857e-01   p_cons 2.348571e-02   p_joint 5.213571e-01

Outputting figure to mutsig2_images.part000000000091/KIF22.2_2054_70000_0.59109_0.023486_0.52136.png
                gene_name: KIF22
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 93 percent done.
KIF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
Cons ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
KS ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KIF23   10000 perm   2 sec   (6312 perm/sec)   p_kst 1.315000e-01   p_cons 2.720000e-01   p_joint 1.319000e-01

Joint ci ratio: 6.121368e-02	ci left: 1.649161e-01	ci right 1.753800e-01	k: 3402	n:20000
Cons ci ratio: 4.524428e-02	ci left: 2.666852e-01	ci right 2.790809e-01	k: 5457	n:20000
KS ci ratio: 7.181649e-02	ci left: 1.249743e-01	ci right 1.343336e-01	k: 2592	n:20000
KIF23   20000 perm   3 sec   (5804 perm/sec)   p_kst 1.296000e-01   p_cons 2.728500e-01   p_joint 1.701000e-01

Outputting figure to mutsig2_images.part000000000091/KIF23.2_2975_20000_0.1296_0.27285_0.1701.png
                gene_name: KIF23
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 94 percent done.
KIF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
Cons ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
KS ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
KIF25   10000 perm   1 sec   (7914 perm/sec)   p_kst 1.622000e-01   p_cons 9.813000e-01   p_joint 7.632000e-01

Outputting figure to mutsig2_images.part000000000091/KIF25.2_1187_10000_0.1622_0.9813_0.7632.png
                gene_name: KIF25
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 96 percent done.
KIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
KS ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
KIF3A   10000 perm   1 sec   (6936 perm/sec)   p_kst 8.516000e-01   p_cons 4.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF3A.2_2168_10000_0.8516_0.4514_1.png
                gene_name: KIF3A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
KIR2DL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
KIR2DL3   10000 perm   1 sec   (7642 perm/sec)   p_kst 7.032000e-01   p_cons 4.369000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIR2DL3.2_1058_10000_0.7032_0.4369_1.png
                gene_name: KIR2DL3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
KIRREL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
Cons ci ratio: 1.776735e-02	ci left: 8.220852e-01	ci right 8.369224e-01	k: 8296	n:10000
KS ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
KIRREL3   10000 perm   1 sec   (6841 perm/sec)   p_kst 2.142000e-01   p_cons 8.296000e-01   p_joint 4.660000e-01

Outputting figure to mutsig2_images.part000000000091/KIRREL3.2_2512_10000_0.2142_0.8296_0.466.png
                gene_name: KIRREL3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000091
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 91 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4422115: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000092> was used as the working directory.
Started at Wed Oct 24 17:57:46 2012
Results reported at Wed Oct 24 18:09:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000092.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000092.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 92  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000092.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    469.35 sec.
    Max Memory :      5305 MB
    Max Swap   :      7734 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
92
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 92
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 92: processing genes 8234 - 8323
Calculating significance of each gene.
Using projection method.
8234	KLC1	7.883980e-01
8235	KLC2	8.034096e-01
8236	KLC3	1
8237	KLC4	9.934229e-01
8238	KLF1	1
8239	KLF10	4.795538e-01
8240	KLF11	6.045954e-01
8241	KLF12	6.853187e-01
8242	KLF13	1
8243	KLF14	6.205132e-01
8244	KLF15	1
8245	KLF16	1.756894e-01
8246	KLF17	5.153588e-01
8247	KLF3	7.370684e-01
8248	KLF4	8.239207e-01
8249	KLF5	9.243638e-01
8250	KLF6	2.745295e-01
8251	KLF7	6.102050e-01
8252	KLF8	3.460791e-01
8253	KLF9	1
8254	KLHDC1	8.074259e-01
8255	KLHDC10	4.070771e-01
8256	KLHDC2	7.861746e-01
8257	KLHDC3	1
8258	KLHDC4	9.661945e-01
8259	KLHDC5	1
8260	KLHDC7A	1
8261	KLHDC7B	1
8262	KLHDC8A	1
8263	KLHDC8B	8.093149e-01
8264	KLHDC9	3.333899e-01
8265	KLHL1	7.766260e-01
8266	KLHL10	7.612048e-01
8267	KLHL11	9.529055e-01
8268	KLHL12	1
8269	KLHL13	9.487422e-02
8270	KLHL14	2.530710e-01
8271	KLHL15	5.509212e-01
8272	KLHL17	9.778547e-01
8273	KLHL18	8.892157e-01
8274	KLHL2	5.146550e-01
8275	KLHL20	7.087265e-01
8276	KLHL21	2.355164e-01
8277	KLHL22	9.206879e-01
8278	KLHL23	1
8279	KLHL24	4.249371e-01
8280	KLHL25	9.465769e-01
8281	KLHL26	8.736034e-01
8282	KLHL28	7.717092e-01
8283	KLHL3	9.171866e-01
8284	KLHL30	6.611631e-01
8285	KLHL31	7.844389e-01
8286	KLHL32	5.858309e-01
8287	KLHL34	1
8288	KLHL35	6.772928e-01
8289	KLHL36	9.842946e-01
In gene KLHL38 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 1758    n = 1	mu =   9.71e-07
8290	KLHL38	1.211850e-02
8291	KLHL4	1.766552e-03
8292	KLHL5	5.277963e-01
8293	KLHL6	1.672662e-01
8294	KLHL7	4.238739e-01
8295	KLHL8	9.217965e-01
8296	KLHL9	9.419033e-01
8297	KLK1	2.226185e-01
8298	KLK10	6.528803e-02
8299	KLK11	6.515484e-01
8300	KLK12	2.312056e-01
8301	KLK13	2.085084e-01
8302	KLK14	3.343457e-01
8303	KLK15	1
8304	KLK2	5.635090e-02
8305	KLK3	1
8306	KLK4	6.180302e-01
8307	KLK5	1
8308	KLK6	1
8309	KLK7	3.581674e-01
8310	KLK8	1.452221e-01
8311	KLK9	7.050437e-01
8312	KLKB1	9.756249e-01
8313	KLRAQ1	9.409294e-01
8314	KLRB1	4.805625e-01
8315	KLRC1	9.244369e-02
8316	KLRC2	5.260157e-02
8317	KLRC3	3.763773e-01
8318	KLRC4	1
8319	KLRD1	1.685256e-01
8320	KLRF1	2.134382e-01
8321	KLRG1	2.278826e-01
8322	KLRG2	1
8323	KLRK1	1.674408e-01
Done

Running MutSig 2:
Scatter job 92: processing genes 8234 - 8323
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KLHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
Cons ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
KS ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
KLHL1   10000 perm   2 sec   (4207 perm/sec)   p_kst 6.406000e-01   p_cons 4.731000e-01   p_joint 7.416000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL1.20_2291_10000_0.6406_0.4731_0.7416.png
                gene_name: KLHL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 2 percent done.
KLHL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KLHL4   10000 perm   2 sec   (4532 perm/sec)   p_kst 6.928000e-01   p_cons 5.700000e-02   p_joint 1.880000e-01

Joint ci ratio: 5.116432e-02	ci left: 2.210609e-01	ci right 2.327186e-01	k: 4537	n:20000
Cons ci ratio: 1.096138e-01	ci left: 5.679652e-02	ci right 6.343209e-02	k: 1201	n:20000
KS ci ratio: 1.832936e-02	ci left: 6.893205e-01	ci right 7.021226e-01	k: 13915	n:20000
KLHL4   20000 perm   5 sec   (4144 perm/sec)   p_kst 6.957500e-01   p_cons 6.005000e-02   p_joint 2.268500e-01

Joint ci ratio: 5.043108e-02	ci left: 1.633891e-01	ci right 1.718754e-01	k: 5028	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 1.496306e-02	ci left: 6.905920e-01	ci right 7.010367e-01	k: 20875	n:30000
KLHL4   30000 perm   8 sec   (3915 perm/sec)   p_kst 6.958333e-01   p_cons 5.936667e-02   p_joint 1.676000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL4.16_2271_30000_0.69583_0.059367_0.1676.png
                gene_name: KLHL4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 3 percent done.
KLHL38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
Cons ci ratio: 3.090116e-02	ci left: 6.070880e-01	ci right 6.262440e-01	k: 6167	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
KLHL38   10000 perm   3 sec   (3343 perm/sec)   p_kst 3.340000e-02   p_cons 6.167000e-01   p_joint 7.430000e-02

Joint ci ratio: 7.523915e-02	ci left: 1.149858e-01	ci right 1.240251e-01	k: 2389	n:20000
Cons ci ratio: 2.212977e-02	ci left: 6.039018e-01	ci right 6.174661e-01	k: 12214	n:20000
KS ci ratio: 1.486517e-01	ci left: 3.109744e-02	ci right 3.613934e-02	k: 671	n:20000
KLHL38   20000 perm   10 sec   (1958 perm/sec)   p_kst 3.355000e-02   p_cons 6.107000e-01   p_joint 1.194500e-01

Joint ci ratio: 7.822813e-02	ci left: 7.420408e-02	ci right 8.027809e-02	k: 2316	n:30000
Cons ci ratio: 1.800087e-02	ci left: 6.069598e-01	ci right 6.180184e-01	k: 18375	n:30000
KS ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
KLHL38   30000 perm   18 sec   (1705 perm/sec)   p_kst 3.260000e-02   p_cons 6.125000e-01   p_joint 7.720000e-02

Joint ci ratio: 6.765685e-02	ci left: 7.479949e-02	ci right 8.006205e-02	k: 3096	n:40000
Cons ci ratio: 1.497194e-02	ci left: 6.267507e-01	ci right 6.362302e-01	k: 25260	n:40000
KS ci ratio: 1.074955e-01	ci left: 3.044286e-02	ci right 3.392549e-02	k: 1286	n:40000
KLHL38   40000 perm   25 sec   (1572 perm/sec)   p_kst 3.215000e-02   p_cons 6.315000e-01   p_joint 7.740000e-02

Joint ci ratio: 7.012471e-02	ci left: 5.675364e-02	ci right 6.089777e-02	k: 2940	n:50000
Cons ci ratio: 1.360916e-02	ci left: 6.196971e-01	ci right 6.282085e-01	k: 31198	n:50000
KS ci ratio: 9.736535e-02	ci left: 2.986910e-02	ci right 3.294562e-02	k: 1569	n:50000
KLHL38   50000 perm   33 sec   (1502 perm/sec)   p_kst 3.138000e-02   p_cons 6.239600e-01   p_joint 5.880000e-02

Outputting figure to mutsig2_images.part000000000092/KLHL38.10_1758_50000_0.03138_0.62396_0.0588.png
                gene_name: KLHL38
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 5 percent done.
KLHL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
Cons ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
KS ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KLHL6   10000 perm   2 sec   (5224 perm/sec)   p_kst 5.650000e-02   p_cons 2.561000e-01   p_joint 8.950000e-02

Joint ci ratio: 1.037668e-01	ci left: 6.313395e-02	ci right 7.009269e-02	k: 1331	n:20000
Cons ci ratio: 4.717921e-02	ci left: 2.505081e-01	ci right 2.626628e-01	k: 5131	n:20000
KS ci ratio: 1.156184e-01	ci left: 5.119939e-02	ci right 5.753095e-02	k: 1086	n:20000
KLHL6   20000 perm   9 sec   (2237 perm/sec)   p_kst 5.430000e-02   p_cons 2.565500e-01   p_joint 6.655000e-02

Joint ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
Cons ci ratio: 3.919978e-02	ci left: 2.450747e-01	ci right 2.549071e-01	k: 7499	n:30000
KS ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
KLHL6   30000 perm   17 sec   (1769 perm/sec)   p_kst 5.370000e-02   p_cons 2.499667e-01   p_joint 6.096667e-02

Outputting figure to mutsig2_images.part000000000092/KLHL6.8_1894_30000_0.0537_0.24997_0.060967.png
                gene_name: KLHL6
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.064 

Current progress: 7 percent done.
KLHL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
Cons ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KLHL13   10000 perm   2 sec   (4732 perm/sec)   p_kst 1.813000e-01   p_cons 2.014000e-01   p_joint 2.711000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL13.7_2249_10000_0.1813_0.2014_0.2711.png
                gene_name: KLHL13
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 8 percent done.
KLHL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
KLHL14   10000 perm   2 sec   (4790 perm/sec)   p_kst 5.308000e-01   p_cons 2.916000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL14.7_1919_10000_0.5308_0.2916_0.3909.png
                gene_name: KLHL14
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 10 percent done.
KLHL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
KS ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
KLHL20   10000 perm   5 sec   (2171 perm/sec)   p_kst 6.736000e-01   p_cons 5.534000e-01   p_joint 7.020000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL20.6_1874_10000_0.6736_0.5534_0.702.png
                gene_name: KLHL20
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 12 percent done.
KLHL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
KS ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
KLHL7   10000 perm   5 sec   (1835 perm/sec)   p_kst 8.102000e-01   p_cons 4.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL7.6_1868_10000_0.8102_0.4546_1.png
                gene_name: KLHL7
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
KLHDC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KS ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
KLHDC10   10000 perm   10 sec   (1004 perm/sec)   p_kst 9.323000e-01   p_cons 4.950000e-02   p_joint 4.028000e-01

Joint ci ratio: 3.145591e-02	ci left: 4.301602e-01	ci right 4.439581e-01	k: 8741	n:20000
Cons ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
KS ci ratio: 7.370379e-03	ci left: 9.304705e-01	ci right 9.374027e-01	k: 18680	n:20000
KLHDC10   20000 perm   19 sec   (1062 perm/sec)   p_kst 9.340000e-01   p_cons 4.830000e-02   p_joint 4.370500e-01

Joint ci ratio: 3.921372e-02	ci left: 2.449423e-01	ci right 2.547729e-01	k: 7495	n:30000
Cons ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
KS ci ratio: 6.072438e-03	ci left: 9.299760e-01	ci right 9.356731e-01	k: 27986	n:30000
KLHDC10   30000 perm   26 sec   (1173 perm/sec)   p_kst 9.328667e-01   p_cons 4.846667e-02   p_joint 2.498333e-01

Joint ci ratio: 3.487590e-02	ci left: 2.358212e-01	ci right 2.442166e-01	k: 9600	n:40000
Cons ci ratio: 8.688362e-02	ci left: 4.631721e-02	ci right 5.054866e-02	k: 1936	n:40000
KS ci ratio: 5.254100e-03	ci left: 9.304803e-01	ci right 9.354066e-01	k: 37319	n:40000
KLHDC10   40000 perm   32 sec   (1235 perm/sec)   p_kst 9.329750e-01   p_cons 4.840000e-02   p_joint 2.400000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC10.5_1369_40000_0.93297_0.0484_0.24.png
                gene_name: KLHDC10
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 15 percent done.
KLF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
KS ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
KLF10   10000 perm   2 sec   (6631 perm/sec)   p_kst 8.258000e-01   p_cons 6.818000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF10.4_1466_10000_0.8258_0.6818_1.png
                gene_name: KLF10
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
KLHL24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
Cons ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KLHL24   10000 perm   2 sec   (6089 perm/sec)   p_kst 2.746000e-01   p_cons 3.593000e-01   p_joint 3.943000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL24.4_1827_10000_0.2746_0.3593_0.3943.png
                gene_name: KLHL24
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 18 percent done.
KLHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
KS ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
KLHL5   10000 perm   2 sec   (5666 perm/sec)   p_kst 8.750000e-01   p_cons 5.761000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL5.4_2312_10000_0.875_0.5761_1.png
                gene_name: KLHL5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
KLHL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
Cons ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
KS ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
KLHL9   10000 perm   3 sec   (3117 perm/sec)   p_kst 7.311000e-01   p_cons 2.942000e-01   p_joint 6.510000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL9.4_1858_10000_0.7311_0.2942_0.651.png
                gene_name: KLHL9
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
KLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
Cons ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
KS ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KLK2   10000 perm   2 sec   (6532 perm/sec)   p_kst 2.649000e-01   p_cons 4.038000e-01   p_joint 3.014000e-01

Outputting figure to mutsig2_images.part000000000092/KLK2.4_843_10000_0.2649_0.4038_0.3014.png
                gene_name: KLK2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 23 percent done.
KLK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 1.294424e-01	ci left: 7.853799e-02	ci right 8.950576e-02	k: 839	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KLK7   10000 perm   2 sec   (6469 perm/sec)   p_kst 7.510000e-02   p_cons 8.390000e-02   p_joint 3.920000e-02

Joint ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
Cons ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
KS ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
KLK7   20000 perm   5 sec   (3736 perm/sec)   p_kst 7.535000e-02   p_cons 8.525000e-02   p_joint 3.470000e-02

Joint ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
Cons ci ratio: 7.381212e-02	ci left: 8.275265e-02	ci right 8.912780e-02	k: 2577	n:30000
KS ci ratio: 7.974886e-02	ci left: 7.155329e-02	ci right 7.752942e-02	k: 2235	n:30000
KLK7   30000 perm   9 sec   (3320 perm/sec)   p_kst 7.450000e-02   p_cons 8.590000e-02   p_joint 3.976667e-02

Joint ci ratio: 8.215583e-02	ci left: 5.163341e-02	ci right 5.608164e-02	k: 2153	n:40000
Cons ci ratio: 6.470214e-02	ci left: 8.132405e-02	ci right 8.678652e-02	k: 3361	n:40000
KS ci ratio: 6.863455e-02	ci left: 7.280628e-02	ci right 7.800556e-02	k: 3015	n:40000
KLK7   40000 perm   14 sec   (2933 perm/sec)   p_kst 7.537500e-02   p_cons 8.402500e-02   p_joint 5.382500e-02

Outputting figure to mutsig2_images.part000000000092/KLK7.4_782_40000_0.075375_0.084025_0.053825.png
                gene_name: KLK7
               theta_stop: 0.082 
                    nperm: 40000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 25 percent done.
KLK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 1.280331e-01	ci left: 8.018782e-02	ci right 9.125491e-02	k: 856	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
KLK8   10000 perm   2 sec   (6388 perm/sec)   p_kst 1.460000e-02   p_cons 8.560000e-02   p_joint 5.220000e-02

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
KS ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
KLK8   20000 perm   5 sec   (3670 perm/sec)   p_kst 1.305000e-02   p_cons 7.960000e-02   p_joint 1.535000e-02

Joint ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
Cons ci ratio: 7.606138e-02	ci left: 7.823141e-02	ci right 8.444995e-02	k: 2439	n:30000
KS ci ratio: 1.971993e-01	ci left: 1.171716e-02	ci right 1.431175e-02	k: 389	n:30000
KLK8   30000 perm   9 sec   (3364 perm/sec)   p_kst 1.296667e-02   p_cons 8.130000e-02   p_joint 1.046667e-02

Joint ci ratio: 2.053802e-01	ci left: 8.097782e-03	ci right 9.974535e-03	k: 360	n:40000
Cons ci ratio: 6.614093e-02	ci left: 7.804879e-02	ci right 8.341226e-02	k: 3228	n:40000
KS ci ratio: 1.650836e-01	ci left: 1.275159e-02	ci right 1.506977e-02	k: 555	n:40000
KLK8   40000 perm   13 sec   (3065 perm/sec)   p_kst 1.387500e-02   p_cons 8.070000e-02   p_joint 9.000000e-03

Joint ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
Cons ci ratio: 5.979112e-02	ci left: 7.678825e-02	ci right 8.154075e-02	k: 3957	n:50000
KS ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
KLK8   50000 perm   17 sec   (2862 perm/sec)   p_kst 1.402000e-02   p_cons 7.914000e-02   p_joint 7.980000e-03

Joint ci ratio: 1.332597e-01	ci left: 1.326852e-02	ci right 1.517889e-02	k: 852	n:60000
Cons ci ratio: 5.439284e-02	ci left: 7.749562e-02	ci right 8.184514e-02	k: 4779	n:60000
KS ci ratio: 1.332597e-01	ci left: 1.326852e-02	ci right 1.517889e-02	k: 852	n:60000
KLK8   60000 perm   22 sec   (2719 perm/sec)   p_kst 1.420000e-02   p_cons 7.965000e-02   p_joint 1.420000e-02

Joint ci ratio: 1.900188e-01	ci left: 5.468535e-03	ci right 6.630127e-03	k: 422	n:70000
Cons ci ratio: 4.893996e-02	ci left: 8.189874e-02	ci right 8.602153e-02	k: 5876	n:70000
KS ci ratio: 1.267210e-01	ci left: 1.263049e-02	ci right 1.435304e-02	k: 943	n:70000
KLK8   70000 perm   27 sec   (2628 perm/sec)   p_kst 1.347143e-02   p_cons 8.394286e-02   p_joint 6.028571e-03

Joint ci ratio: 1.129790e-01	ci left: 1.398678e-02	ci right 1.567367e-02	k: 1185	n:80000
Cons ci ratio: 4.572558e-02	ci left: 8.221039e-02	ci right 8.606983e-02	k: 6730	n:80000
KS ci ratio: 1.197727e-01	ci left: 1.242057e-02	ci right 1.401502e-02	k: 1056	n:80000
KLK8   80000 perm   31 sec   (2559 perm/sec)   p_kst 1.320000e-02   p_cons 8.412500e-02   p_joint 1.481250e-02

Joint ci ratio: 1.088711e-01	ci left: 1.342634e-02	ci right 1.498298e-02	k: 1277	n:90000
Cons ci ratio: 4.313345e-02	ci left: 8.223965e-02	ci right 8.587610e-02	k: 7564	n:90000
KS ci ratio: 1.127368e-01	ci left: 1.250773e-02	ci right 1.401277e-02	k: 1192	n:90000
KLK8   90000 perm   36 sec   (2485 perm/sec)   p_kst 1.324444e-02   p_cons 8.404444e-02   p_joint 1.418889e-02

Joint ci ratio: 1.092530e-01	ci left: 1.201514e-02	ci right 1.341334e-02	k: 1270	n:100000
Cons ci ratio: 4.088697e-02	ci left: 8.245626e-02	ci right 8.590790e-02	k: 8417	n:100000
KS ci ratio: 1.051788e-01	ci left: 1.297893e-02	ci right 1.442948e-02	k: 1369	n:100000
KLK8   100000 perm   41 sec   (2431 perm/sec)   p_kst 1.369000e-02   p_cons 8.417000e-02   p_joint 1.270000e-02

Joint ci ratio: 8.814098e-02	ci left: 1.688450e-02	ci right 1.845017e-02	k: 1942	n:110000
Cons ci ratio: 3.901596e-02	ci left: 8.241226e-02	ci right 8.570062e-02	k: 9245	n:110000
KS ci ratio: 9.994840e-02	ci left: 1.310116e-02	ci right 1.448829e-02	k: 1516	n:110000
KLK8   110000 perm   46 sec   (2377 perm/sec)   p_kst 1.378182e-02   p_cons 8.404545e-02   p_joint 1.765455e-02

Outputting figure to mutsig2_images.part000000000092/KLK8.4_938_110000_0.013782_0.084045_0.017655.png
                gene_name: KLK8
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 27 percent done.
KLF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
Cons ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
KLF6   10000 perm   1 sec   (6883 perm/sec)   p_kst 3.040000e-02   p_cons 2.001000e-01   p_joint 1.177000e-01

Joint ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
Cons ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
KS ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
KLF6   20000 perm   4 sec   (5099 perm/sec)   p_kst 3.165000e-02   p_cons 2.133000e-01   p_joint 5.995000e-02

Joint ci ratio: 8.110916e-02	ci left: 6.929611e-02	ci right 7.518706e-02	k: 2166	n:30000
Cons ci ratio: 4.346848e-02	ci left: 2.086097e-01	ci right 2.179125e-01	k: 6397	n:30000
KS ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
KLF6   30000 perm   6 sec   (5132 perm/sec)   p_kst 3.133333e-02   p_cons 2.132333e-01   p_joint 7.220000e-02

Joint ci ratio: 9.868338e-02	ci left: 3.607420e-02	ci right 3.984326e-02	k: 1517	n:40000
Cons ci ratio: 3.779886e-02	ci left: 2.078790e-01	ci right 2.159129e-01	k: 8475	n:40000
KS ci ratio: 1.090819e-01	ci left: 2.956650e-02	ci right 3.300199e-02	k: 1250	n:40000
KLF6   40000 perm   8 sec   (5094 perm/sec)   p_kst 3.125000e-02   p_cons 2.118750e-01   p_joint 3.792500e-02

Joint ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
Cons ci ratio: 3.378410e-02	ci left: 2.085435e-01	ci right 2.157300e-01	k: 10606	n:50000
KS ci ratio: 9.685697e-02	ci left: 3.018157e-02	ci right 3.327311e-02	k: 1585	n:50000
KLF6   50000 perm   10 sec   (5034 perm/sec)   p_kst 3.170000e-02   p_cons 2.121200e-01   p_joint 3.092000e-02

Outputting figure to mutsig2_images.part000000000092/KLF6.3_868_50000_0.0317_0.21212_0.03092.png
                gene_name: KLF6
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 28 percent done.
KLF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
KLF8   10000 perm   1 sec   (6890 perm/sec)   p_kst 4.709000e-01   p_cons 1.323000e-01   p_joint 3.548000e-01

Joint ci ratio: 3.514823e-02	ci left: 3.766539e-01	ci right 3.901800e-01	k: 7668	n:20000
Cons ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
KS ci ratio: 2.938513e-02	ci left: 4.638620e-01	ci right 4.777465e-01	k: 9416	n:20000
KLF8   20000 perm   5 sec   (3749 perm/sec)   p_kst 4.708000e-01   p_cons 1.234000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000092/KLF8.3_1104_20000_0.4708_0.1234_0.3834.png
                gene_name: KLF8
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 30 percent done.
KLHDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
Cons ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
KS ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
KLHDC4   10000 perm   5 sec   (2046 perm/sec)   p_kst 5.932000e-01   p_cons 1.920000e-01   p_joint 5.070000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC4.3_1607_10000_0.5932_0.192_0.507.png
                gene_name: KLHDC4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 32 percent done.
KLHDC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
Cons ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
KS ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
KLHDC9   10000 perm   2 sec   (5448 perm/sec)   p_kst 3.031000e-01   p_cons 7.340000e-01   p_joint 4.131000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC9.3_1085_10000_0.3031_0.734_0.4131.png
                gene_name: KLHDC9
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 33 percent done.
KLHL12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
Cons ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
KS ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KLHL12   10000 perm   5 sec   (1875 perm/sec)   p_kst 7.180000e-01   p_cons 7.063000e-01   p_joint 7.782000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL12.3_1751_10000_0.718_0.7063_0.7782.png
                gene_name: KLHL12
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 35 percent done.
KLHL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
Cons ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
KLHL15   10000 perm   2 sec   (4138 perm/sec)   p_kst 1.224000e-01   p_cons 9.230000e-02   p_joint 4.130000e-02

Joint ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
Cons ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
KS ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
KLHL15   20000 perm   12 sec   (1670 perm/sec)   p_kst 1.140000e-01   p_cons 9.200000e-02   p_joint 3.755000e-02

Joint ci ratio: 6.020902e-02	ci left: 1.200601e-01	ci right 1.275463e-01	k: 3713	n:30000
Cons ci ratio: 7.155763e-02	ci left: 8.767012e-02	ci right 9.420934e-02	k: 2727	n:30000
KS ci ratio: 6.345000e-02	ci left: 1.092741e-01	ci right 1.164678e-01	k: 3385	n:30000
KLHL15   30000 perm   14 sec   (2134 perm/sec)   p_kst 1.128333e-01   p_cons 9.090000e-02   p_joint 1.237667e-01

Outputting figure to mutsig2_images.part000000000092/KLHL15.3_1823_30000_0.11283_0.0909_0.12377.png
                gene_name: KLHL15
               theta_stop: 0.072 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 37 percent done.
KLHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KLHL2   10000 perm   2 sec   (5196 perm/sec)   p_kst 3.665000e-01   p_cons 2.939000e-01   p_joint 4.536000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL2.3_1884_10000_0.3665_0.2939_0.4536.png
                gene_name: KLHL2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 38 percent done.
KLHL21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 1.877030e-02	ci left: 8.057249e-01	ci right 8.210921e-01	k: 8135	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
KLHL21   10000 perm   4 sec   (2339 perm/sec)   p_kst 1.478000e-01   p_cons 8.135000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL21.3_1810_10000_0.1478_0.8135_0.3446.png
                gene_name: KLHL21
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 40 percent done.
KLHL25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
KLHL25   10000 perm   2 sec   (6241 perm/sec)   p_kst 8.744000e-01   p_cons 9.290000e-02   p_joint 5.430000e-01

Joint ci ratio: 2.429039e-02	ci left: 5.586963e-01	ci right 5.724847e-01	k: 11312	n:20000
Cons ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
KS ci ratio: 1.078665e-02	ci left: 8.637378e-01	ci right 8.731548e-01	k: 17370	n:20000
KLHL25   20000 perm   5 sec   (3864 perm/sec)   p_kst 8.685000e-01   p_cons 9.690000e-02   p_joint 5.656000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL25.3_1774_20000_0.8685_0.0969_0.5656.png
                gene_name: KLHL25
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 42 percent done.
KLHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
KS ci ratio: 2.278862e-02	ci left: 7.387626e-01	ci right 7.558931e-01	k: 7474	n:10000
KLHL3   10000 perm   3 sec   (3204 perm/sec)   p_kst 7.474000e-01   p_cons 9.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL3.3_1824_10000_0.7474_0.9913_1.png
                gene_name: KLHL3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
KLHL31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KLHL31   10000 perm   5 sec   (1981 perm/sec)   p_kst 7.856000e-01   p_cons 4.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL31.3_1913_10000_0.7856_0.4852_1.png
                gene_name: KLHL31
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
KLHL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 4.737048e-03	ci left: 9.831763e-01	ci right 9.879347e-01	k: 9857	n:10000
KLHL32   10000 perm   2 sec   (5540 perm/sec)   p_kst 9.857000e-01   p_cons 6.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL32.3_1903_10000_0.9857_0.6906_1.png
                gene_name: KLHL32
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
KLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
Cons ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
KS ci ratio: 7.021762e-02	ci left: 2.291867e-01	ci right 2.459664e-01	k: 2375	n:10000
KLK1   10000 perm   2 sec   (6657 perm/sec)   p_kst 2.375000e-01   p_cons 1.984000e-01   p_joint 3.275000e-01

Outputting figure to mutsig2_images.part000000000092/KLK1.3_809_10000_0.2375_0.1984_0.3275.png
                gene_name: KLK1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
KLK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KLK10   10000 perm   1 sec   (7303 perm/sec)   p_kst 7.740000e-01   p_cons 6.440000e-02   p_joint 2.661000e-01

Joint ci ratio: 5.340739e-02	ci left: 2.065012e-01	ci right 2.178826e-01	k: 4243	n:20000
Cons ci ratio: 1.103482e-01	ci left: 5.606595e-02	ci right 6.266288e-02	k: 1186	n:20000
KS ci ratio: 1.524327e-02	ci left: 7.618845e-01	ci right 7.736375e-01	k: 15356	n:20000
KLK10   20000 perm   3 sec   (6418 perm/sec)   p_kst 7.678000e-01   p_cons 5.930000e-02   p_joint 2.121500e-01

Joint ci ratio: 3.463703e-02	ci left: 2.939882e-01	ci right 3.043841e-01	k: 8975	n:30000
Cons ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
KS ci ratio: 1.244840e-02	ci left: 7.629124e-01	ci right 7.725023e-01	k: 23032	n:30000
KLK10   30000 perm   5 sec   (6125 perm/sec)   p_kst 7.677333e-01   p_cons 5.836667e-02   p_joint 2.991667e-01

Outputting figure to mutsig2_images.part000000000092/KLK10.3_851_30000_0.76773_0.058367_0.29917.png
                gene_name: KLK10
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
KLK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.990243e-02	ci left: 3.719650e-01	ci right 3.911040e-01	k: 3815	n:10000
Cons ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
KS ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
KLK13   10000 perm   2 sec   (6553 perm/sec)   p_kst 3.860000e-01   p_cons 3.206000e-01   p_joint 3.815000e-01

Outputting figure to mutsig2_images.part000000000092/KLK13.3_854_10000_0.386_0.3206_0.3815.png
                gene_name: KLK13
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 52 percent done.
KLK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KLK15   10000 perm   2 sec   (6390 perm/sec)   p_kst 3.028000e-01   p_cons 1.975000e-01   p_joint 3.284000e-01

Outputting figure to mutsig2_images.part000000000092/KLK15.3_791_10000_0.3028_0.1975_0.3284.png
                gene_name: KLK15
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 53 percent done.
KLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KLK4   10000 perm   2 sec   (6086 perm/sec)   p_kst 6.077000e-01   p_cons 8.030000e-02   p_joint 4.609000e-01

Joint ci ratio: 3.837955e-02	ci left: 3.361703e-01	ci right 3.493754e-01	k: 6855	n:20000
Cons ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
KS ci ratio: 2.228130e-02	ci left: 6.006422e-01	ci right 6.142266e-01	k: 12149	n:20000
KLK4   20000 perm   4 sec   (5225 perm/sec)   p_kst 6.074500e-01   p_cons 8.135000e-02   p_joint 3.427500e-01

Outputting figure to mutsig2_images.part000000000092/KLK4.3_785_20000_0.60745_0.08135_0.34275.png
                gene_name: KLK4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 55 percent done.
KLKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
Cons ci ratio: 5.738033e-02	ci left: 3.089757e-01	ci right 3.273303e-01	k: 3181	n:10000
KS ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KLKB1   10000 perm   2 sec   (5838 perm/sec)   p_kst 4.213000e-01   p_cons 3.181000e-01   p_joint 8.056000e-01

Outputting figure to mutsig2_images.part000000000092/KLKB1.3_1973_10000_0.4213_0.3181_0.8056.png
                gene_name: KLKB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 57 percent done.
KLRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
Cons ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
KLRC1   10000 perm   2 sec   (6220 perm/sec)   p_kst 7.124000e-01   p_cons 1.855000e-01   p_joint 4.961000e-01

Outputting figure to mutsig2_images.part000000000092/KLRC1.3_726_10000_0.7124_0.1855_0.4961.png
                gene_name: KLRC1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 58 percent done.
KLRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
KLRC2   10000 perm   2 sec   (6508 perm/sec)   p_kst 3.299000e-01   p_cons 2.686000e-01   p_joint 4.585000e-01

Outputting figure to mutsig2_images.part000000000092/KLRC2.3_720_10000_0.3299_0.2686_0.4585.png
                gene_name: KLRC2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 60 percent done.
KLRC3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
KS ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
KLRC3   10000 perm   1 sec   (7208 perm/sec)   p_kst 8.569000e-01   p_cons 8.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLRC3.2_847_10000_0.8569_0.8479_1.png
                gene_name: KLRC3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
KLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
KS ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
KLC1   10000 perm   1 sec   (7059 perm/sec)   p_kst 4.979000e-01   p_cons 8.410000e-02   p_joint 1

Joint ci ratio: 2.509864e-02	ci left: 5.425227e-01	ci right 5.563629e-01	k: 10989	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 2.804548e-02	ci left: 4.871472e-01	ci right 5.010545e-01	k: 9882	n:20000
KLC1   20000 perm   3 sec   (6221 perm/sec)   p_kst 4.941000e-01   p_cons 8.700000e-02   p_joint 5.494500e-01

Outputting figure to mutsig2_images.part000000000092/KLC1.2_1954_20000_0.4941_0.087_0.54945.png
                gene_name: KLC1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 63 percent done.
KLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
KS ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
KLC2   10000 perm   1 sec   (7106 perm/sec)   p_kst 8.306000e-01   p_cons 6.721000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLC2.2_1929_10000_0.8306_0.6721_1.png
                gene_name: KLC2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KLF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
KS ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
KLF11   10000 perm   1 sec   (7224 perm/sec)   p_kst 6.429000e-01   p_cons 6.015000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000092/KLF11.2_1555_10000_0.6429_0.6015_0.6988.png
                gene_name: KLF11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 67 percent done.
KLF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
Cons ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
KS ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
KLF12   10000 perm   1 sec   (7661 perm/sec)   p_kst 2.865000e-01   p_cons 1.622000e-01   p_joint 6.614000e-01

Outputting figure to mutsig2_images.part000000000092/KLF12.2_1237_10000_0.2865_0.1622_0.6614.png
                gene_name: KLF12
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 68 percent done.
KLF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.815547e-02	ci left: 8.157822e-01	ci right 8.308289e-01	k: 8234	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
KLF17   10000 perm   1 sec   (7487 perm/sec)   p_kst 5.078000e-01   p_cons 8.234000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF17.2_1182_10000_0.5078_0.8234_1.png
                gene_name: KLF17
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
KLF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
KLF3   10000 perm   1 sec   (6811 perm/sec)   p_kst 5.311000e-01   p_cons 6.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF3.2_1058_10000_0.5311_0.6193_1.png
                gene_name: KLF3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
KLF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
KLF7   10000 perm   1 sec   (7659 perm/sec)   p_kst 2.115000e-01   p_cons 7.550000e-02   p_joint 1

Joint ci ratio: 5.885512e-03	ci left: 9.539933e-01	ci right 9.596729e-01	k: 19138	n:20000
Cons ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
KS ci ratio: 5.423567e-02	ci left: 2.014523e-01	ci right 2.127330e-01	k: 4141	n:20000
KLF7   20000 perm   3 sec   (6650 perm/sec)   p_kst 2.070500e-01   p_cons 7.315000e-02   p_joint 9.569000e-01

Outputting figure to mutsig2_images.part000000000092/KLF7.2_925_20000_0.20705_0.07315_0.9569.png
                gene_name: KLF7
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 73 percent done.
KLHDC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572208e-03	ci left: 9.391052e-01	ci right 9.482342e-01	k: 9438	n:10000
Cons ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
KS ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
KLHDC7A   10000 perm   1 sec   (7055 perm/sec)   p_kst 5.466000e-01   p_cons 8.075000e-01   p_joint 9.438000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC7A.2_2338_10000_0.5466_0.8075_0.9438.png
                gene_name: KLHDC7A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 75 percent done.
KLHL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
KS ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
KLHL10   10000 perm   2 sec   (6246 perm/sec)   p_kst 8.100000e-02   p_cons 1.435000e-01   p_joint 5.640000e-02

Joint ci ratio: 6.745712e-02	ci left: 1.395556e-01	ci right 1.493481e-01	k: 2888	n:20000
Cons ci ratio: 6.308832e-02	ci left: 1.566712e-01	ci right 1.669273e-01	k: 3235	n:20000
KS ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
KLHL10   20000 perm   4 sec   (5475 perm/sec)   p_kst 8.295000e-02   p_cons 1.617500e-01   p_joint 1.444000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL10.2_1847_20000_0.08295_0.16175_0.1444.png
                gene_name: KLHL10
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 77 percent done.
KLHL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
KS ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
KLHL18   10000 perm   2 sec   (6634 perm/sec)   p_kst 2.016000e-01   p_cons 9.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL18.2_1765_10000_0.2016_0.912_1.png
                gene_name: KLHL18
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
KLHL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.358540e-02	ci left: 7.254243e-01	ci right 7.428391e-01	k: 7342	n:10000
KS ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
KLHL22   10000 perm   1 sec   (7278 perm/sec)   p_kst 5.671000e-01   p_cons 7.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL22.2_1929_10000_0.5671_0.7342_1.png
                gene_name: KLHL22
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
KLHL26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
Cons ci ratio: 2.174454e-02	ci left: 7.562597e-01	ci right 7.729859e-01	k: 7647	n:10000
KS ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
KLHL26   10000 perm   2 sec   (6225 perm/sec)   p_kst 3.514000e-01   p_cons 7.647000e-01   p_joint 7.916000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL26.2_1860_10000_0.3514_0.7647_0.7916.png
                gene_name: KLHL26
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 82 percent done.
KLHL28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
Cons ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KLHL28   10000 perm   1 sec   (7094 perm/sec)   p_kst 3.399000e-01   p_cons 4.450000e-01   p_joint 7.630000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL28.2_1732_10000_0.3399_0.445_0.763.png
                gene_name: KLHL28
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 83 percent done.
KLHL30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
Cons ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
KS ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KLHL30   10000 perm   2 sec   (6191 perm/sec)   p_kst 9.476000e-01   p_cons 1.839000e-01   p_joint 5.206000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL30.2_1765_10000_0.9476_0.1839_0.5206.png
                gene_name: KLHL30
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 85 percent done.
KLHL34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
Cons ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
KS ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
KLHL34   10000 perm   2 sec   (6068 perm/sec)   p_kst 2.727000e-01   p_cons 5.191000e-01   p_joint 3.998000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL34.2_1939_10000_0.2727_0.5191_0.3998.png
                gene_name: KLHL34
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 87 percent done.
KLK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
Cons ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
KS ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KLK12   10000 perm   1 sec   (8018 perm/sec)   p_kst 6.498000e-01   p_cons 4.985000e-01   p_joint 9.742000e-01

Outputting figure to mutsig2_images.part000000000092/KLK12.2_829_10000_0.6498_0.4985_0.9742.png
                gene_name: KLK12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 88 percent done.
KLK14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
Cons ci ratio: 5.857854e-02	ci left: 3.001484e-01	ci right 3.183629e-01	k: 3092	n:10000
KS ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
KLK14   10000 perm   1 sec   (7903 perm/sec)   p_kst 2.711000e-01   p_cons 3.092000e-01   p_joint 3.680000e-01

Outputting figure to mutsig2_images.part000000000092/KLK14.2_828_10000_0.2711_0.3092_0.368.png
                gene_name: KLK14
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 90 percent done.
KLK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
KLK5   10000 perm   1 sec   (7684 perm/sec)   p_kst 3.625000e-01   p_cons 8.848000e-01   p_joint 8.281000e-01

Outputting figure to mutsig2_images.part000000000092/KLK5.2_902_10000_0.3625_0.8848_0.8281.png
                gene_name: KLK5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
KLRAQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
KS ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
KLRAQ1   10000 perm   2 sec   (5541 perm/sec)   p_kst 8.502000e-01   p_cons 2.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLRAQ1.2_2431_10000_0.8502_0.285_1.png
                gene_name: KLRAQ1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KLRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
Cons ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
KS ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
KLRD1   10000 perm   1 sec   (6860 perm/sec)   p_kst 6.740000e-01   p_cons 5.241000e-01   p_joint 7.532000e-01

Outputting figure to mutsig2_images.part000000000092/KLRD1.2_564_10000_0.674_0.5241_0.7532.png
                gene_name: KLRD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 95 percent done.
KLRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
KLRF1   10000 perm   1 sec   (7887 perm/sec)   p_kst 7.280000e-01   p_cons 5.443000e-01   p_joint 8.692000e-01

Outputting figure to mutsig2_images.part000000000092/KLRF1.2_723_10000_0.728_0.5443_0.8692.png
                gene_name: KLRF1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 97 percent done.
KLRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
KS ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
KLRG1   10000 perm   1 sec   (7913 perm/sec)   p_kst 7.730000e-01   p_cons 1.267000e-01   p_joint 1

Joint ci ratio: 1.165171e-02	ci left: 8.448235e-01	ci right 8.547746e-01	k: 16997	n:20000
Cons ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
KS ci ratio: 1.492457e-02	ci left: 7.694002e-01	ci right 7.810197e-01	k: 15505	n:20000
KLRG1   20000 perm   3 sec   (6896 perm/sec)   p_kst 7.752500e-01   p_cons 1.270000e-01   p_joint 8.498500e-01

Outputting figure to mutsig2_images.part000000000092/KLRG1.2_590_20000_0.77525_0.127_0.84985.png
                gene_name: KLRG1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 98 percent done.
KLRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
Cons ci ratio: 2.752760e-02	ci left: 6.603835e-01	ci right 6.789176e-01	k: 6697	n:10000
KS ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
KLRK1   10000 perm   1 sec   (7837 perm/sec)   p_kst 4.151000e-01   p_cons 6.697000e-01   p_joint 9.408000e-01

Outputting figure to mutsig2_images.part000000000092/KLRK1.2_679_10000_0.4151_0.6697_0.9408.png
                gene_name: KLRK1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000092
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 92 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1535>
Subject: Job 4422120: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000093> was used as the working directory.
Started at Wed Oct 24 17:57:54 2012
Results reported at Thu Oct 25 01:42:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000093.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000093.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 93  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000093.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  30126.41 sec.
    Max Memory :      5416 MB
    Max Swap   :      7803 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
93
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 93
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 93: processing genes 8324 - 8414
Calculating significance of each gene.
Using projection method.
8324	KMO	3.411219e-01
8325	KNCN	1
8326	KNDC1	2.444496e-01
8327	KNG1	7.498984e-01
8328	KNTC1	5.651648e-01
8329	KPNA1	8.310209e-01
8330	KPNA2	8.279560e-01
8331	KPNA3	8.192681e-01
8332	KPNA4	4.481389e-01
8333	KPNA5	6.805638e-01
8334	KPNA6	6.247998e-01
8335	KPNB1	8.712040e-01
8336	KPRP	8.012617e-01
8337	KPTN	1
8338	KRAS	0
8339	KRBA1	5.904500e-01
8340	KRBA2	7.617745e-01
8341	KRCC1	1
8342	KREMEN1	9.284744e-01
8343	KREMEN2	1
8344	KRI1	1
8345	KRIT1	9.528624e-01
8346	KRR1	7.983850e-01
8347	KRT1	8.867700e-01
8348	KRT10	7.490704e-01
8349	KRT12	7.115288e-01
8350	KRT13	2.786949e-01
8351	KRT14	2.719649e-01
8352	KRT15	4.130303e-01
8353	KRT16	2.686815e-01
8354	KRT17	6.938733e-01
8355	KRT18	9.379183e-01
8356	KRT19	8.918011e-01
8357	KRT2	2.091926e-01
8358	KRT20	7.454050e-01
8359	KRT222	6.086161e-01
8360	KRT23	1
In gene KRT24 the following bins exceed PROBCAP:
    LUAD-17-Z054-TP	categ 6	N = 1609    n = 1	mu =   6.69e-08
8361	KRT24	4.677692e-02
8362	KRT25	9.884493e-02
8363	KRT26	9.168812e-02
8364	KRT27	1
8365	KRT28	1.087507e-01
8366	KRT3	1
8367	KRT31	9.059958e-01
8368	KRT32	4.158982e-01
8369	KRT33A	4.705246e-01
8370	KRT33B	8.967651e-01
8371	KRT34	6.003722e-01
8372	KRT35	2.624352e-01
8373	KRT36	2.255542e-01
8374	KRT37	9.203647e-01
8375	KRT38	6.375283e-01
8376	KRT39	9.235562e-01
8377	KRT4	1
8378	KRT40	4.962588e-01
8379	KRT5	1
8380	KRT6A	3.315726e-01
8381	KRT6B	1.622863e-02
8382	KRT6C	1
8383	KRT7	9.470094e-02
8384	KRT71	9.474588e-02
8385	KRT72	1
8386	KRT73	7.626660e-01
8387	KRT74	3.556637e-01
8388	KRT75	2.738855e-01
8389	KRT76	1
8390	KRT77	1
8391	KRT78	9.260656e-01
8392	KRT79	9.692662e-01
8393	KRT8	3.390996e-01
8394	KRT80	8.035245e-01
8395	KRT81	4.351290e-01
8396	KRT82	4.210444e-01
8397	KRT83	7.538937e-01
8398	KRT84	6.884162e-01
8399	KRT85	1
8400	KRT86	7.082060e-01
8401	KRT9	7.988931e-01
8402	KRTAP1-1	4.605230e-02
8403	KRTAP1-3	3.282259e-02
8404	KRTAP1-5	3.199206e-06
8405	KRTAP10-1	1
8406	KRTAP10-10	5.028517e-02
8407	KRTAP10-11	3.105625e-01
8408	KRTAP10-12	3.111553e-01
8409	KRTAP10-2	4.808220e-01
8410	KRTAP10-3	3.330583e-02
8411	KRTAP10-4	2.969418e-03
8412	KRTAP10-5	1
8413	KRTAP10-6	1.945686e-02
8414	KRTAP10-7	3.955517e-01
Done

Running MutSig 2:
Scatter job 93: processing genes 8324 - 8414
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KRAS   10000 perm   3 sec   (3183 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KRAS   20000 perm   10 sec   (2089 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KRAS   30000 perm   13 sec   (2283 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KRAS   40000 perm   17 sec   (2382 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KRAS   50000 perm   21 sec   (2436 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KRAS   60000 perm   24 sec   (2465 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KRAS   70000 perm   28 sec   (2479 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KRAS   80000 perm   32 sec   (2482 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KRAS   90000 perm   36 sec   (2480 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KRAS   100000 perm   40 sec   (2476 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KRAS   110000 perm   45 sec   (2466 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KRAS   120000 perm   49 sec   (2455 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KRAS   130000 perm   53 sec   (2442 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KRAS   140000 perm   58 sec   (2428 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KRAS   150000 perm   62 sec   (2410 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KRAS   160000 perm   67 sec   (2391 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KRAS   170000 perm   72 sec   (2374 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KRAS   180000 perm   76 sec   (2357 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KRAS   190000 perm   81 sec   (2338 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KRAS   200000 perm   86 sec   (2322 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KRAS   210000 perm   91 sec   (2304 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KRAS   220000 perm   96 sec   (2285 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KRAS   230000 perm   102 sec   (2266 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KRAS   240000 perm   107 sec   (2245 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KRAS   250000 perm   112 sec   (2225 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KRAS   260000 perm   118 sec   (2206 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KRAS   270000 perm   123 sec   (2188 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KRAS   280000 perm   129 sec   (2168 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KRAS   290000 perm   135 sec   (2150 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KRAS   300000 perm   141 sec   (2132 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KRAS   310000 perm   147 sec   (2115 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KRAS   320000 perm   153 sec   (2097 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KRAS   330000 perm   159 sec   (2080 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KRAS   340000 perm   165 sec   (2063 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KRAS   350000 perm   171 sec   (2044 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KRAS   360000 perm   178 sec   (2028 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KRAS   370000 perm   184 sec   (2011 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KRAS   380000 perm   191 sec   (1995 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KRAS   390000 perm   197 sec   (1979 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KRAS   400000 perm   204 sec   (1964 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KRAS   410000 perm   210 sec   (1950 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KRAS   420000 perm   217 sec   (1935 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KRAS   430000 perm   224 sec   (1920 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KRAS   440000 perm   231 sec   (1905 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KRAS   450000 perm   238 sec   (1891 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KRAS   460000 perm   245 sec   (1877 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KRAS   470000 perm   252 sec   (1863 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KRAS   480000 perm   260 sec   (1849 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KRAS   490000 perm   267 sec   (1834 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KRAS   500000 perm   275 sec   (1821 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KRAS   510000 perm   282 sec   (1807 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KRAS   520000 perm   290 sec   (1795 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KRAS   530000 perm   298 sec   (1781 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KRAS   540000 perm   305 sec   (1768 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KRAS   550000 perm   313 sec   (1756 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KRAS   560000 perm   321 sec   (1744 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KRAS   570000 perm   329 sec   (1731 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KRAS   580000 perm   337 sec   (1719 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KRAS   590000 perm   346 sec   (1707 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KRAS   600000 perm   354 sec   (1695 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KRAS   610000 perm   362 sec   (1683 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KRAS   620000 perm   371 sec   (1672 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KRAS   630000 perm   379 sec   (1660 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KRAS   640000 perm   388 sec   (1649 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KRAS   650000 perm   397 sec   (1638 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KRAS   660000 perm   406 sec   (1626 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KRAS   670000 perm   415 sec   (1615 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KRAS   680000 perm   424 sec   (1604 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KRAS   690000 perm   433 sec   (1594 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KRAS   700000 perm   442 sec   (1584 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KRAS   710000 perm   451 sec   (1573 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KRAS   720000 perm   461 sec   (1563 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KRAS   730000 perm   470 sec   (1553 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KRAS   740000 perm   480 sec   (1543 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KRAS   750000 perm   489 sec   (1533 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KRAS   760000 perm   499 sec   (1523 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KRAS   770000 perm   509 sec   (1514 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KRAS   780000 perm   519 sec   (1504 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KRAS   790000 perm   529 sec   (1494 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KRAS   800000 perm   539 sec   (1485 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KRAS   810000 perm   549 sec   (1476 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KRAS   820000 perm   559 sec   (1466 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KRAS   830000 perm   570 sec   (1457 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KRAS   840000 perm   580 sec   (1449 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KRAS   850000 perm   590 sec   (1440 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KRAS   860000 perm   601 sec   (1431 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KRAS   870000 perm   611 sec   (1423 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KRAS   880000 perm   622 sec   (1415 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KRAS   890000 perm   633 sec   (1406 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KRAS   900000 perm   644 sec   (1398 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KRAS   910000 perm   655 sec   (1390 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KRAS   920000 perm   666 sec   (1382 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KRAS   930000 perm   677 sec   (1374 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KRAS   940000 perm   688 sec   (1366 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KRAS   950000 perm   700 sec   (1358 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KRAS   960000 perm   711 sec   (1351 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KRAS   970000 perm   722 sec   (1343 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KRAS   980000 perm   734 sec   (1335 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KRAS   990000 perm   745 sec   (1328 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KRAS   1000000 perm   757 sec   (1321 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KRAS   1010000 perm   769 sec   (1314 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KRAS   1020000 perm   781 sec   (1306 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KRAS   1030000 perm   793 sec   (1299 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KRAS   1040000 perm   805 sec   (1292 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KRAS   1050000 perm   817 sec   (1285 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KRAS   1060000 perm   829 sec   (1278 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KRAS   1070000 perm   842 sec   (1271 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KRAS   1080000 perm   854 sec   (1264 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KRAS   1090000 perm   867 sec   (1258 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KRAS   1100000 perm   879 sec   (1251 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KRAS   1110000 perm   892 sec   (1244 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KRAS   1120000 perm   905 sec   (1237 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KRAS   1130000 perm   918 sec   (1230 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KRAS   1140000 perm   931 sec   (1224 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KRAS   1150000 perm   945 sec   (1217 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KRAS   1160000 perm   958 sec   (1211 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KRAS   1170000 perm   971 sec   (1205 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KRAS   1180000 perm   984 sec   (1199 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KRAS   1190000 perm   998 sec   (1193 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KRAS   1200000 perm   1011 sec   (1187 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KRAS   1210000 perm   1025 sec   (1181 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KRAS   1220000 perm   1038 sec   (1175 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KRAS   1230000 perm   1052 sec   (1170 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KRAS   1240000 perm   1066 sec   (1164 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KRAS   1250000 perm   1079 sec   (1158 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KRAS   1260000 perm   1093 sec   (1153 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KRAS   1270000 perm   1107 sec   (1147 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KRAS   1280000 perm   1121 sec   (1142 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KRAS   1290000 perm   1135 sec   (1136 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KRAS   1300000 perm   1149 sec   (1131 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KRAS   1310000 perm   1164 sec   (1126 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KRAS   1320000 perm   1178 sec   (1120 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KRAS   1330000 perm   1193 sec   (1115 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KRAS   1340000 perm   1208 sec   (1110 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KRAS   1350000 perm   1222 sec   (1104 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KRAS   1360000 perm   1237 sec   (1099 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KRAS   1370000 perm   1252 sec   (1094 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KRAS   1380000 perm   1267 sec   (1089 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KRAS   1390000 perm   1282 sec   (1084 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KRAS   1400000 perm   1297 sec   (1079 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KRAS   1410000 perm   1313 sec   (1074 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KRAS   1420000 perm   1328 sec   (1069 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KRAS   1430000 perm   1343 sec   (1065 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KRAS   1440000 perm   1358 sec   (1060 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KRAS   1450000 perm   1374 sec   (1055 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KRAS   1460000 perm   1389 sec   (1051 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KRAS   1470000 perm   1405 sec   (1046 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KRAS   1480000 perm   1421 sec   (1042 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KRAS   1490000 perm   1437 sec   (1037 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KRAS   1500000 perm   1453 sec   (1033 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KRAS   1510000 perm   1468 sec   (1028 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KRAS   1520000 perm   1485 sec   (1024 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KRAS   1530000 perm   1501 sec   (1019 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KRAS   1540000 perm   1517 sec   (1015 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KRAS   1550000 perm   1534 sec   (1011 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KRAS   1560000 perm   1551 sec   (1006 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KRAS   1570000 perm   1568 sec   (1002 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KRAS   1580000 perm   1584 sec   (997 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KRAS   1590000 perm   1601 sec   (993 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KRAS   1600000 perm   1617 sec   (989 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KRAS   1610000 perm   1634 sec   (985 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KRAS   1620000 perm   1652 sec   (981 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KRAS   1630000 perm   1668 sec   (977 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KRAS   1640000 perm   1686 sec   (973 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KRAS   1650000 perm   1702 sec   (969 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KRAS   1660000 perm   1719 sec   (965 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KRAS   1670000 perm   1737 sec   (961 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KRAS   1680000 perm   1755 sec   (957 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KRAS   1690000 perm   1772 sec   (954 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KRAS   1700000 perm   1790 sec   (950 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KRAS   1710000 perm   1808 sec   (946 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KRAS   1720000 perm   1826 sec   (942 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KRAS   1730000 perm   1843 sec   (939 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KRAS   1740000 perm   1861 sec   (935 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KRAS   1750000 perm   1879 sec   (931 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KRAS   1760000 perm   1898 sec   (927 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KRAS   1770000 perm   1916 sec   (924 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KRAS   1780000 perm   1934 sec   (920 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KRAS   1790000 perm   1953 sec   (917 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KRAS   1800000 perm   1972 sec   (913 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KRAS   1810000 perm   1990 sec   (910 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KRAS   1820000 perm   2009 sec   (906 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KRAS   1830000 perm   2028 sec   (902 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KRAS   1840000 perm   2047 sec   (899 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KRAS   1850000 perm   2065 sec   (896 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KRAS   1860000 perm   2084 sec   (893 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KRAS   1870000 perm   2103 sec   (889 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KRAS   1880000 perm   2122 sec   (886 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KRAS   1890000 perm   2142 sec   (883 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KRAS   1900000 perm   2161 sec   (879 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KRAS   1910000 perm   2180 sec   (876 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KRAS   1920000 perm   2200 sec   (873 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KRAS   1930000 perm   2219 sec   (870 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KRAS   1940000 perm   2239 sec   (867 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KRAS   1950000 perm   2259 sec   (863 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KRAS   1960000 perm   2278 sec   (860 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KRAS   1970000 perm   2299 sec   (857 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KRAS   1980000 perm   2318 sec   (854 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KRAS   1990000 perm   2338 sec   (851 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KRAS   2000000 perm   2359 sec   (848 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KRAS   2010000 perm   2379 sec   (845 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KRAS   2020000 perm   2399 sec   (842 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KRAS   2030000 perm   2420 sec   (839 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KRAS   2040000 perm   2440 sec   (836 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KRAS   2050000 perm   2461 sec   (833 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KRAS   2060000 perm   2482 sec   (830 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KRAS   2070000 perm   2503 sec   (827 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KRAS   2080000 perm   2523 sec   (824 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KRAS   2090000 perm   2544 sec   (821 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KRAS   2100000 perm   2566 sec   (819 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KRAS   2110000 perm   2587 sec   (816 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KRAS   2120000 perm   2607 sec   (813 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KRAS   2130000 perm   2629 sec   (810 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KRAS   2140000 perm   2650 sec   (808 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KRAS   2150000 perm   2671 sec   (805 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KRAS   2160000 perm   2693 sec   (802 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KRAS   2170000 perm   2714 sec   (799 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KRAS   2180000 perm   2736 sec   (797 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KRAS   2190000 perm   2758 sec   (794 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KRAS   2200000 perm   2780 sec   (791 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KRAS   2210000 perm   2802 sec   (789 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KRAS   2220000 perm   2824 sec   (786 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KRAS   2230000 perm   2846 sec   (783 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KRAS   2240000 perm   2869 sec   (781 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KRAS   2250000 perm   2892 sec   (778 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KRAS   2260000 perm   2914 sec   (776 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KRAS   2270000 perm   2937 sec   (773 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KRAS   2280000 perm   2960 sec   (770 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KRAS   2290000 perm   2982 sec   (768 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KRAS   2300000 perm   3005 sec   (765 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KRAS   2310000 perm   3028 sec   (763 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KRAS   2320000 perm   3050 sec   (761 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KRAS   2330000 perm   3074 sec   (758 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KRAS   2340000 perm   3097 sec   (756 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KRAS   2350000 perm   3121 sec   (753 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KRAS   2360000 perm   3144 sec   (751 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KRAS   2370000 perm   3167 sec   (748 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KRAS   2380000 perm   3191 sec   (746 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KRAS   2390000 perm   3215 sec   (743 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KRAS   2400000 perm   3239 sec   (741 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KRAS   2410000 perm   3263 sec   (739 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KRAS   2420000 perm   3288 sec   (736 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KRAS   2430000 perm   3312 sec   (734 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KRAS   2440000 perm   3337 sec   (731 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KRAS   2450000 perm   3360 sec   (729 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KRAS   2460000 perm   3385 sec   (727 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KRAS   2470000 perm   3409 sec   (725 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KRAS   2480000 perm   3433 sec   (722 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KRAS   2490000 perm   3457 sec   (720 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KRAS   2500000 perm   3482 sec   (718 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KRAS   2510000 perm   3507 sec   (716 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KRAS   2520000 perm   3532 sec   (714 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KRAS   2530000 perm   3557 sec   (711 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KRAS   2540000 perm   3582 sec   (709 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KRAS   2550000 perm   3607 sec   (707 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KRAS   2560000 perm   3633 sec   (705 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KRAS   2570000 perm   3658 sec   (703 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KRAS   2580000 perm   3683 sec   (700 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KRAS   2590000 perm   3709 sec   (698 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KRAS   2600000 perm   3734 sec   (696 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KRAS   2610000 perm   3760 sec   (694 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KRAS   2620000 perm   3786 sec   (692 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KRAS   2630000 perm   3812 sec   (690 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KRAS   2640000 perm   3838 sec   (688 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KRAS   2650000 perm   3864 sec   (686 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KRAS   2660000 perm   3889 sec   (684 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KRAS   2670000 perm   3915 sec   (682 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KRAS   2680000 perm   3941 sec   (680 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KRAS   2690000 perm   3967 sec   (678 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KRAS   2700000 perm   3994 sec   (676 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KRAS   2710000 perm   4020 sec   (674 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KRAS   2720000 perm   4047 sec   (672 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KRAS   2730000 perm   4074 sec   (670 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KRAS   2740000 perm   4101 sec   (668 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KRAS   2750000 perm   4127 sec   (666 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KRAS   2760000 perm   4155 sec   (664 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KRAS   2770000 perm   4181 sec   (662 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KRAS   2780000 perm   4208 sec   (661 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KRAS   2790000 perm   4235 sec   (659 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KRAS   2800000 perm   4262 sec   (657 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KRAS   2810000 perm   4289 sec   (655 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KRAS   2820000 perm   4317 sec   (653 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KRAS   2830000 perm   4344 sec   (651 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KRAS   2840000 perm   4372 sec   (650 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KRAS   2850000 perm   4400 sec   (648 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KRAS   2860000 perm   4428 sec   (646 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KRAS   2870000 perm   4455 sec   (644 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KRAS   2880000 perm   4483 sec   (642 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KRAS   2890000 perm   4511 sec   (641 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KRAS   2900000 perm   4539 sec   (639 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KRAS   2910000 perm   4568 sec   (637 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KRAS   2920000 perm   4596 sec   (635 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KRAS   2930000 perm   4624 sec   (634 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KRAS   2940000 perm   4653 sec   (632 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KRAS   2950000 perm   4681 sec   (630 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KRAS   2960000 perm   4709 sec   (629 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KRAS   2970000 perm   4738 sec   (627 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KRAS   2980000 perm   4766 sec   (625 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KRAS   2990000 perm   4795 sec   (624 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KRAS   3000000 perm   4824 sec   (622 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KRAS   3010000 perm   4854 sec   (620 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KRAS   3020000 perm   4883 sec   (618 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KRAS   3030000 perm   4912 sec   (617 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KRAS   3040000 perm   4941 sec   (615 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KRAS   3050000 perm   4970 sec   (614 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KRAS   3060000 perm   5000 sec   (612 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KRAS   3070000 perm   5030 sec   (610 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KRAS   3080000 perm   5059 sec   (609 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KRAS   3090000 perm   5089 sec   (607 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KRAS   3100000 perm   5118 sec   (606 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KRAS   3110000 perm   5148 sec   (604 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KRAS   3120000 perm   5178 sec   (603 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KRAS   3130000 perm   5208 sec   (601 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KRAS   3140000 perm   5238 sec   (599 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KRAS   3150000 perm   5269 sec   (598 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KRAS   3160000 perm   5299 sec   (596 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KRAS   3170000 perm   5329 sec   (595 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KRAS   3180000 perm   5360 sec   (593 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KRAS   3190000 perm   5390 sec   (592 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KRAS   3200000 perm   5421 sec   (590 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KRAS   3210000 perm   5451 sec   (589 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KRAS   3220000 perm   5482 sec   (587 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KRAS   3230000 perm   5513 sec   (586 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KRAS   3240000 perm   5544 sec   (584 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KRAS   3250000 perm   5575 sec   (583 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KRAS   3260000 perm   5606 sec   (581 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KRAS   3270000 perm   5637 sec   (580 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KRAS   3280000 perm   5669 sec   (579 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KRAS   3290000 perm   5700 sec   (577 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KRAS   3300000 perm   5732 sec   (576 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KRAS   3310000 perm   5764 sec   (574 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KRAS   3320000 perm   5796 sec   (573 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KRAS   3330000 perm   5827 sec   (571 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KRAS   3340000 perm   5859 sec   (570 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KRAS   3350000 perm   5891 sec   (569 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KRAS   3360000 perm   5923 sec   (567 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KRAS   3370000 perm   5955 sec   (566 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KRAS   3380000 perm   5988 sec   (564 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KRAS   3390000 perm   6021 sec   (563 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KRAS   3400000 perm   6053 sec   (562 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KRAS   3410000 perm   6085 sec   (560 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KRAS   3420000 perm   6118 sec   (559 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KRAS   3430000 perm   6151 sec   (558 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KRAS   3440000 perm   6184 sec   (556 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KRAS   3450000 perm   6216 sec   (555 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KRAS   3460000 perm   6249 sec   (554 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KRAS   3470000 perm   6281 sec   (552 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KRAS   3480000 perm   6314 sec   (551 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KRAS   3490000 perm   6348 sec   (550 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KRAS   3500000 perm   6382 sec   (548 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KRAS   3510000 perm   6415 sec   (547 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KRAS   3520000 perm   6447 sec   (546 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KRAS   3530000 perm   6481 sec   (545 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KRAS   3540000 perm   6514 sec   (543 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KRAS   3550000 perm   6548 sec   (542 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KRAS   3560000 perm   6582 sec   (541 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KRAS   3570000 perm   6617 sec   (540 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KRAS   3580000 perm   6650 sec   (538 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KRAS   3590000 perm   6684 sec   (537 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KRAS   3600000 perm   6719 sec   (536 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KRAS   3610000 perm   6752 sec   (535 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KRAS   3620000 perm   6786 sec   (533 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KRAS   3630000 perm   6820 sec   (532 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KRAS   3640000 perm   6855 sec   (531 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KRAS   3650000 perm   6890 sec   (530 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KRAS   3660000 perm   6924 sec   (529 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KRAS   3670000 perm   6959 sec   (527 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KRAS   3680000 perm   6993 sec   (526 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KRAS   3690000 perm   7028 sec   (525 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KRAS   3700000 perm   7064 sec   (524 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KRAS   3710000 perm   7098 sec   (523 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KRAS   3720000 perm   7133 sec   (522 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KRAS   3730000 perm   7169 sec   (520 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KRAS   3740000 perm   7204 sec   (519 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KRAS   3750000 perm   7239 sec   (518 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KRAS   3760000 perm   7273 sec   (517 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KRAS   3770000 perm   7309 sec   (516 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KRAS   3780000 perm   7344 sec   (515 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KRAS   3790000 perm   7380 sec   (514 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KRAS   3800000 perm   7415 sec   (512 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KRAS   3810000 perm   7451 sec   (511 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KRAS   3820000 perm   7487 sec   (510 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KRAS   3830000 perm   7522 sec   (509 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KRAS   3840000 perm   7558 sec   (508 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KRAS   3850000 perm   7594 sec   (507 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KRAS   3860000 perm   7630 sec   (506 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KRAS   3870000 perm   7667 sec   (505 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KRAS   3880000 perm   7704 sec   (504 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KRAS   3890000 perm   7742 sec   (502 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KRAS   3900000 perm   7779 sec   (501 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KRAS   3910000 perm   7815 sec   (500 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KRAS   3920000 perm   7853 sec   (499 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KRAS   3930000 perm   7890 sec   (498 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KRAS   3940000 perm   7928 sec   (497 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KRAS   3950000 perm   7965 sec   (496 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KRAS   3960000 perm   8003 sec   (495 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KRAS   3970000 perm   8040 sec   (494 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KRAS   3980000 perm   8078 sec   (493 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KRAS   3990000 perm   8115 sec   (492 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KRAS   4000000 perm   8153 sec   (491 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KRAS   4010000 perm   8191 sec   (490 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KRAS   4020000 perm   8229 sec   (489 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KRAS   4030000 perm   8266 sec   (488 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KRAS   4040000 perm   8304 sec   (487 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KRAS   4050000 perm   8342 sec   (485 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KRAS   4060000 perm   8381 sec   (484 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KRAS   4070000 perm   8419 sec   (483 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KRAS   4080000 perm   8457 sec   (482 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KRAS   4090000 perm   8495 sec   (481 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KRAS   4100000 perm   8533 sec   (480 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KRAS   4110000 perm   8571 sec   (480 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KRAS   4120000 perm   8609 sec   (479 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KRAS   4130000 perm   8648 sec   (478 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KRAS   4140000 perm   8686 sec   (477 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KRAS   4150000 perm   8725 sec   (476 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KRAS   4160000 perm   8764 sec   (475 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KRAS   4170000 perm   8803 sec   (474 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KRAS   4180000 perm   8841 sec   (473 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KRAS   4190000 perm   8879 sec   (472 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KRAS   4200000 perm   8918 sec   (471 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KRAS   4210000 perm   8958 sec   (470 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KRAS   4220000 perm   8996 sec   (469 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KRAS   4230000 perm   9035 sec   (468 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KRAS   4240000 perm   9075 sec   (467 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KRAS   4250000 perm   9115 sec   (466 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KRAS   4260000 perm   9154 sec   (465 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KRAS   4270000 perm   9194 sec   (464 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KRAS   4280000 perm   9234 sec   (464 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KRAS   4290000 perm   9273 sec   (463 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KRAS   4300000 perm   9313 sec   (462 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KRAS   4310000 perm   9354 sec   (461 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KRAS   4320000 perm   9394 sec   (460 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KRAS   4330000 perm   9434 sec   (459 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KRAS   4340000 perm   9475 sec   (458 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KRAS   4350000 perm   9515 sec   (457 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KRAS   4360000 perm   9555 sec   (456 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KRAS   4370000 perm   9596 sec   (455 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KRAS   4380000 perm   9637 sec   (455 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KRAS   4390000 perm   9678 sec   (454 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KRAS   4400000 perm   9717 sec   (453 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KRAS   4410000 perm   9758 sec   (452 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KRAS   4420000 perm   9800 sec   (451 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KRAS   4430000 perm   9842 sec   (450 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KRAS   4440000 perm   9884 sec   (449 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KRAS   4450000 perm   9925 sec   (448 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KRAS   4460000 perm   9966 sec   (448 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KRAS   4470000 perm   10008 sec   (447 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KRAS   4480000 perm   10050 sec   (446 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KRAS   4490000 perm   10092 sec   (445 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KRAS   4500000 perm   10134 sec   (444 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KRAS   4510000 perm   10176 sec   (443 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KRAS   4520000 perm   10217 sec   (442 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KRAS   4530000 perm   10258 sec   (442 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KRAS   4540000 perm   10301 sec   (441 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KRAS   4550000 perm   10342 sec   (440 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KRAS   4560000 perm   10384 sec   (439 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KRAS   4570000 perm   10426 sec   (438 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KRAS   4580000 perm   10469 sec   (437 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KRAS   4590000 perm   10511 sec   (437 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KRAS   4600000 perm   10553 sec   (436 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KRAS   4610000 perm   10596 sec   (435 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KRAS   4620000 perm   10638 sec   (434 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KRAS   4630000 perm   10682 sec   (433 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KRAS   4640000 perm   10725 sec   (433 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KRAS   4650000 perm   10769 sec   (432 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KRAS   4660000 perm   10812 sec   (431 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KRAS   4670000 perm   10855 sec   (430 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KRAS   4680000 perm   10897 sec   (429 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KRAS   4690000 perm   10940 sec   (429 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KRAS   4700000 perm   10983 sec   (428 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KRAS   4710000 perm   11026 sec   (427 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KRAS   4720000 perm   11069 sec   (426 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KRAS   4730000 perm   11113 sec   (426 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KRAS   4740000 perm   11157 sec   (425 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KRAS   4750000 perm   11201 sec   (424 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KRAS   4760000 perm   11245 sec   (423 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KRAS   4770000 perm   11289 sec   (423 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KRAS   4780000 perm   11333 sec   (422 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KRAS   4790000 perm   11377 sec   (421 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KRAS   4800000 perm   11422 sec   (420 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KRAS   4810000 perm   11466 sec   (420 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KRAS   4820000 perm   11510 sec   (419 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KRAS   4830000 perm   11555 sec   (418 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KRAS   4840000 perm   11600 sec   (417 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KRAS   4850000 perm   11644 sec   (417 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KRAS   4860000 perm   11689 sec   (416 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KRAS   4870000 perm   11735 sec   (415 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KRAS   4880000 perm   11780 sec   (414 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KRAS   4890000 perm   11825 sec   (414 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KRAS   4900000 perm   11871 sec   (413 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KRAS   4910000 perm   11915 sec   (412 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KRAS   4920000 perm   11960 sec   (411 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KRAS   4930000 perm   12005 sec   (411 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KRAS   4940000 perm   12050 sec   (410 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KRAS   4950000 perm   12095 sec   (409 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KRAS   4960000 perm   12141 sec   (409 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KRAS   4970000 perm   12186 sec   (408 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KRAS   4980000 perm   12230 sec   (407 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KRAS   4990000 perm   12276 sec   (406 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KRAS   5000000 perm   12323 sec   (406 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000093/KRAS.60_707_5000000_2e-07_2e-07_0.png
                gene_name: KRAS
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 1 percent done.
KNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
KS ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
KNDC1   10000 perm   3 sec   (3530 perm/sec)   p_kst 8.235000e-01   p_cons 8.700000e-03   p_joint 4.990000e-02

Joint ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
Cons ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
KS ci ratio: 1.273135e-02	ci left: 8.204713e-01	ci right 8.310338e-01	k: 16516	n:20000
KNDC1   20000 perm   6 sec   (3234 perm/sec)   p_kst 8.258000e-01   p_cons 8.650000e-03   p_joint 4.065000e-02

Joint ci ratio: 1.022528e-01	ci left: 4.430721e-02	ci right 4.911440e-02	k: 1400	n:30000
Cons ci ratio: 2.541604e-01	ci left: 6.866967e-03	ci right 8.896746e-03	k: 235	n:30000
KS ci ratio: 1.061225e-02	ci left: 8.153695e-01	ci right 8.241018e-01	k: 24593	n:30000
KNDC1   30000 perm   10 sec   (3134 perm/sec)   p_kst 8.197667e-01   p_cons 7.833333e-03   p_joint 4.666667e-02

Joint ci ratio: 9.778297e-02	ci left: 3.673323e-02	ci right 4.053413e-02	k: 1544	n:40000
Cons ci ratio: 2.152233e-01	ci left: 7.339583e-03	ci right 9.132911e-03	k: 328	n:40000
KS ci ratio: 9.222805e-03	ci left: 8.149141e-01	ci right 8.224896e-01	k: 32749	n:40000
KNDC1   40000 perm   13 sec   (3053 perm/sec)   p_kst 8.187250e-01   p_cons 8.200000e-03   p_joint 3.860000e-02

Joint ci ratio: 6.900967e-02	ci left: 5.852421e-02	ci right 6.272698e-02	k: 3030	n:50000
Cons ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
KS ci ratio: 8.267574e-03	ci left: 8.146500e-01	ci right 8.214330e-01	k: 40903	n:50000
KNDC1   50000 perm   17 sec   (2991 perm/sec)   p_kst 8.180600e-01   p_cons 8.080000e-03   p_joint 6.060000e-02

Joint ci ratio: 5.465416e-02	ci left: 7.680437e-02	ci right 8.113646e-02	k: 4737	n:60000
Cons ci ratio: 1.752827e-01	ci left: 7.541761e-03	ci right 9.006400e-03	k: 495	n:60000
KS ci ratio: 7.582092e-03	ci left: 8.135637e-01	ci right 8.197723e-01	k: 49001	n:60000
KNDC1   60000 perm   20 sec   (2946 perm/sec)   p_kst 8.166833e-01   p_cons 8.250000e-03   p_joint 7.895000e-02

Joint ci ratio: 5.736858e-02	ci left: 6.073193e-02	ci right 6.433301e-02	k: 4376	n:70000
Cons ci ratio: 1.564767e-01	ci left: 8.190062e-03	ci right 9.593959e-03	k: 621	n:70000
KS ci ratio: 7.017912e-03	ci left: 8.138710e-01	ci right 8.196170e-01	k: 57173	n:70000
KNDC1   70000 perm   24 sec   (2904 perm/sec)   p_kst 8.167571e-01   p_cons 8.871429e-03   p_joint 6.251429e-02

Joint ci ratio: 5.990812e-02	ci left: 4.927609e-02	ci right 5.233159e-02	k: 4063	n:80000
Cons ci ratio: 1.465640e-01	ci left: 8.212610e-03	ci right 9.523379e-03	k: 708	n:80000
KS ci ratio: 6.580699e-03	ci left: 8.133224e-01	ci right 8.187047e-01	k: 65282	n:80000
KNDC1   80000 perm   28 sec   (2862 perm/sec)   p_kst 8.160250e-01   p_cons 8.850000e-03   p_joint 5.078750e-02

Joint ci ratio: 5.008171e-02	ci left: 6.213496e-02	ci right 6.533767e-02	k: 5735	n:90000
Cons ci ratio: 1.389419e-01	ci left: 8.157236e-03	ci right 9.385851e-03	k: 788	n:90000
KS ci ratio: 6.188548e-03	ci left: 8.142458e-01	ci right 8.193115e-01	k: 73511	n:90000
KNDC1   90000 perm   32 sec   (2825 perm/sec)   p_kst 8.167889e-01   p_cons 8.755556e-03   p_joint 6.372222e-02

Joint ci ratio: 4.977497e-02	ci left: 5.694453e-02	ci right 5.986115e-02	k: 5839	n:100000
Cons ci ratio: 1.311843e-01	ci left: 8.269123e-03	ci right 9.439632e-03	k: 884	n:100000
KS ci ratio: 5.885849e-03	ci left: 8.136144e-01	ci right 8.184273e-01	k: 81603	n:100000
KNDC1   100000 perm   36 sec   (2788 perm/sec)   p_kst 8.160300e-01   p_cons 8.840000e-03   p_joint 5.839000e-02

Joint ci ratio: 5.398164e-02	ci left: 4.450924e-02	ci right 4.698751e-02	k: 5031	n:110000
Cons ci ratio: 1.255684e-01	ci left: 8.230095e-03	ci right 9.341491e-03	k: 965	n:110000
KS ci ratio: 5.609776e-03	ci left: 8.138434e-01	ci right 8.184308e-01	k: 89776	n:110000
KNDC1   110000 perm   40 sec   (2750 perm/sec)   p_kst 8.161455e-01   p_cons 8.772727e-03   p_joint 4.573636e-02

Joint ci ratio: 5.212008e-02	ci left: 4.384216e-02	ci right 4.619656e-02	k: 5401	n:120000
Cons ci ratio: 1.194710e-01	ci left: 8.360167e-03	ci right 9.430435e-03	k: 1066	n:120000
KS ci ratio: 5.372956e-03	ci left: 8.138293e-01	ci right 8.182220e-01	k: 97924	n:120000
KNDC1   120000 perm   44 sec   (2717 perm/sec)   p_kst 8.160333e-01   p_cons 8.883333e-03   p_joint 4.500833e-02

Joint ci ratio: 5.047480e-02	ci left: 4.321822e-02	ci right 4.546370e-02	k: 5763	n:130000
Cons ci ratio: 1.145801e-01	ci left: 8.411538e-03	ci right 9.441315e-03	k: 1159	n:130000
KS ci ratio: 5.171466e-03	ci left: 8.133728e-01	ci right 8.175977e-01	k: 106014	n:130000
KNDC1   130000 perm   48 sec   (2685 perm/sec)   p_kst 8.154923e-01   p_cons 8.915385e-03   p_joint 4.433077e-02

Joint ci ratio: 4.618624e-02	ci left: 4.780437e-02	ci right 5.007150e-02	k: 6850	n:140000
Cons ci ratio: 1.099350e-01	ci left: 8.504970e-03	ci right 9.501240e-03	k: 1259	n:140000
KS ci ratio: 4.981446e-03	ci left: 8.135656e-01	ci right 8.176356e-01	k: 114185	n:140000
KNDC1   140000 perm   53 sec   (2655 perm/sec)   p_kst 8.156071e-01   p_cons 8.992857e-03   p_joint 4.892857e-02

Joint ci ratio: 3.976159e-02	ci left: 5.964210e-02	ci right 6.206824e-02	k: 9127	n:150000
Cons ci ratio: 1.058519e-01	ci left: 8.580181e-03	ci right 9.545605e-03	k: 1358	n:150000
KS ci ratio: 4.813287e-03	ci left: 8.135879e-01	ci right 8.175199e-01	k: 122334	n:150000
KNDC1   150000 perm   57 sec   (2626 perm/sec)   p_kst 8.155600e-01   p_cons 9.053333e-03   p_joint 6.084667e-02

Joint ci ratio: 3.623628e-02	ci left: 6.691992e-02	ci right 6.939576e-02	k: 10904	n:160000
Cons ci ratio: 1.025478e-01	ci left: 8.585675e-03	ci right 9.519745e-03	k: 1447	n:160000
KS ci ratio: 4.658759e-03	ci left: 8.137600e-01	ci right 8.175661e-01	k: 130507	n:160000
KNDC1   160000 perm   62 sec   (2598 perm/sec)   p_kst 8.156688e-01   p_cons 9.043750e-03   p_joint 6.815000e-02

Joint ci ratio: 3.632840e-02	ci left: 6.293436e-02	ci right 6.526877e-02	k: 10896	n:170000
Cons ci ratio: 1.001949e-01	ci left: 8.476203e-03	ci right 9.375958e-03	k: 1516	n:170000
KS ci ratio: 4.134674e-03	ci left: 8.392057e-01	ci right 8.426885e-01	k: 142962	n:170000
KNDC1   170000 perm   66 sec   (2569 perm/sec)   p_kst 8.409529e-01   p_cons 8.917647e-03   p_joint 6.409412e-02

Joint ci ratio: 3.726608e-02	ci left: 5.683091e-02	ci right 5.899447e-02	k: 10423	n:180000
Cons ci ratio: 9.734857e-02	ci left: 8.492955e-03	ci right 9.367415e-03	k: 1606	n:180000
KS ci ratio: 4.018891e-03	ci left: 8.392076e-01	ci right 8.425925e-01	k: 151363	n:180000
KNDC1   180000 perm   71 sec   (2539 perm/sec)   p_kst 8.409056e-01   p_cons 8.922222e-03   p_joint 5.790556e-02

Outputting figure to mutsig2_images.part000000000093/KNDC1.12_5370_180000_0.84091_0.0089222_0.057906.png
                gene_name: KNDC1
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.0089 
      ci_cons_bounds_left: 0.0085 
     ci_cons_bounds_right: 0.0094 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.059 

Current progress: 3 percent done.
KNTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
Cons ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
KNTC1   10000 perm   3 sec   (3372 perm/sec)   p_kst 4.191000e-01   p_cons 1.356000e-01   p_joint 2.526000e-01

Outputting figure to mutsig2_images.part000000000093/KNTC1.12_6882_10000_0.4191_0.1356_0.2526.png
                gene_name: KNTC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
KRT6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
Cons ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KS ci ratio: 3.239124e-02	ci left: 5.844994e-01	ci right 6.038457e-01	k: 5942	n:10000
KRT6B   10000 perm   2 sec   (4907 perm/sec)   p_kst 5.942000e-01   p_cons 3.469000e-01   p_joint 5.562000e-01

Outputting figure to mutsig2_images.part000000000093/KRT6B.12_1731_10000_0.5942_0.3469_0.5562.png
                gene_name: KRT6B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 5 percent done.
KPRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849773e-02	ci left: 8.101938e-01	ci right 8.254206e-01	k: 8179	n:10000
Cons ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
KS ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
KPRP   10000 perm   2 sec   (4729 perm/sec)   p_kst 5.156000e-01   p_cons 7.289000e-01   p_joint 8.179000e-01

Outputting figure to mutsig2_images.part000000000093/KPRP.9_1744_10000_0.5156_0.7289_0.8179.png
                gene_name: KPRP
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 7 percent done.
KRT73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
Cons ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
KS ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
KRT73   10000 perm   2 sec   (4695 perm/sec)   p_kst 8.295000e-01   p_cons 6.977000e-01   p_joint 9.023000e-01

Outputting figure to mutsig2_images.part000000000093/KRT73.9_1659_10000_0.8295_0.6977_0.9023.png
                gene_name: KRT73
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 8 percent done.
KRTAP10-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
Cons ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
KS ci ratio: 4.399229e-02	ci left: 4.327331e-01	ci right 4.523004e-01	k: 4425	n:10000
KRTAP10-4   10000 perm   2 sec   (5682 perm/sec)   p_kst 4.425000e-01   p_cons 5.489000e-01   p_joint 5.492000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-4.9_1210_10000_0.4425_0.5489_0.5492.png
                gene_name: KRTAP10-4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 9 percent done.
KRT28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
Cons ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KS ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
KRT28   10000 perm   2 sec   (5323 perm/sec)   p_kst 5.534000e-01   p_cons 2.338000e-01   p_joint 3.718000e-01

Outputting figure to mutsig2_images.part000000000093/KRT28.8_1427_10000_0.5534_0.2338_0.3718.png
                gene_name: KRT28
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
KRT38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.946732e-02	ci left: 1.878651e-01	ci right 2.035126e-01	k: 1956	n:10000
Cons ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
KRT38   10000 perm   2 sec   (5352 perm/sec)   p_kst 7.241000e-01   p_cons 4.930000e-02   p_joint 1.956000e-01

Joint ci ratio: 5.140613e-02	ci left: 2.194262e-01	ci right 2.310538e-01	k: 4504	n:20000
Cons ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
KS ci ratio: 1.714812e-02	ci left: 7.169421e-01	ci right 7.293930e-01	k: 14464	n:20000
KRT38   20000 perm   4 sec   (4796 perm/sec)   p_kst 7.232000e-01   p_cons 5.825000e-02   p_joint 2.252000e-01

Joint ci ratio: 5.452482e-02	ci left: 1.429447e-01	ci right 1.509904e-01	k: 4408	n:30000
Cons ci ratio: 9.360105e-02	ci left: 5.264230e-02	ci right 5.784425e-02	k: 1656	n:30000
KS ci ratio: 1.423949e-02	ci left: 7.112620e-01	ci right 7.214961e-01	k: 21492	n:30000
KRT38   30000 perm   7 sec   (4553 perm/sec)   p_kst 7.164000e-01   p_cons 5.520000e-02   p_joint 1.469333e-01

Outputting figure to mutsig2_images.part000000000093/KRT38.8_1399_30000_0.7164_0.0552_0.14693.png
                gene_name: KRT38
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 12 percent done.
KRT71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
KRT71   10000 perm   2 sec   (5587 perm/sec)   p_kst 6.000000e-03   p_cons 2.970000e-02   p_joint 1.080000e-02

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
KS ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
KRT71   20000 perm   4 sec   (4966 perm/sec)   p_kst 5.800000e-03   p_cons 2.745000e-02   p_joint 5.750000e-03

Joint ci ratio: 3.782780e-01	ci left: 2.893683e-03	ci right 4.271882e-03	k: 106	n:30000
Cons ci ratio: 1.268842e-01	ci left: 2.887377e-02	ci right 3.281777e-02	k: 924	n:30000
KS ci ratio: 2.929386e-01	ci left: 5.064840e-03	ci right 6.832899e-03	k: 177	n:30000
KRT71   30000 perm   6 sec   (4712 perm/sec)   p_kst 5.900000e-03   p_cons 3.080000e-02   p_joint 3.533333e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 1.091269e-01	ci left: 2.954216e-02	ci right 3.297633e-02	k: 1249	n:40000
KS ci ratio: 2.517445e-01	ci left: 5.266731e-03	ci right 6.806308e-03	k: 240	n:40000
KRT71   40000 perm   9 sec   (4543 perm/sec)   p_kst 6.000000e-03   p_cons 3.122500e-02   p_joint 2.875000e-03

Joint ci ratio: 1.972103e-01	ci left: 7.066603e-03	ci right 8.631348e-03	k: 391	n:50000
Cons ci ratio: 1.005153e-01	ci left: 2.803426e-02	ci right 3.102069e-02	k: 1475	n:50000
KS ci ratio: 2.263996e-01	ci left: 5.285274e-03	ci right 6.653040e-03	k: 297	n:50000
KRT71   50000 perm   11 sec   (4421 perm/sec)   p_kst 5.940000e-03   p_cons 2.950000e-02   p_joint 7.820000e-03

Joint ci ratio: 1.879194e-01	ci left: 6.523199e-03	ci right 7.891785e-03	k: 431	n:60000
Cons ci ratio: 9.084212e-02	ci left: 2.873097e-02	ci right 3.148139e-02	k: 1805	n:60000
KS ci ratio: 2.042741e-01	ci left: 5.476804e-03	ci right 6.738354e-03	k: 365	n:60000
KRT71   60000 perm   14 sec   (4314 perm/sec)   p_kst 6.083333e-03   p_cons 3.008333e-02   p_joint 7.183333e-03

Joint ci ratio: 1.976871e-01	ci left: 5.033459e-03	ci right 6.150982e-03	k: 390	n:70000
Cons ci ratio: 8.474851e-02	ci left: 2.839885e-02	ci right 3.092605e-02	k: 2075	n:70000
KS ci ratio: 1.895685e-01	ci left: 5.495756e-03	ci right 6.660045e-03	k: 424	n:70000
KRT71   70000 perm   17 sec   (4226 perm/sec)   p_kst 6.057143e-03   p_cons 2.964286e-02   p_joint 5.571429e-03

Joint ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
Cons ci ratio: 7.973637e-02	ci left: 2.815447e-02	ci right 3.050483e-02	k: 2345	n:80000
KS ci ratio: 1.770896e-01	ci left: 5.548265e-03	ci right 6.638020e-03	k: 486	n:80000
KRT71   80000 perm   19 sec   (4150 perm/sec)   p_kst 6.075000e-03   p_cons 2.931250e-02   p_joint 1.412500e-03

Joint ci ratio: 3.422407e-01	ci left: 1.206966e-03	ci right 1.714928e-03	k: 130	n:90000
Cons ci ratio: 7.522394e-02	ci left: 2.818602e-02	ci right 3.040001e-02	k: 2635	n:90000
KS ci ratio: 1.660306e-01	ci left: 5.644318e-03	ci right 6.676790e-03	k: 553	n:90000
KRT71   90000 perm   22 sec   (4065 perm/sec)   p_kst 6.144444e-03   p_cons 2.927778e-02   p_joint 1.444444e-03

Joint ci ratio: 3.805403e-01	ci left: 8.588738e-04	ci right 1.270948e-03	k: 105	n:100000
Cons ci ratio: 7.134980e-02	ci left: 2.825358e-02	ci right 3.035384e-02	k: 2929	n:100000
KS ci ratio: 1.565607e-01	ci left: 5.742075e-03	ci right 6.726894e-03	k: 622	n:100000
KRT71   100000 perm   25 sec   (3985 perm/sec)   p_kst 6.220000e-03   p_cons 2.929000e-02   p_joint 1.050000e-03

Joint ci ratio: 3.685715e-01	ci left: 8.384393e-04	ci right 1.225011e-03	k: 112	n:110000
Cons ci ratio: 6.800766e-02	ci left: 2.832020e-02	ci right 3.032290e-02	k: 3224	n:110000
KS ci ratio: 1.476892e-01	ci left: 5.893473e-03	ci right 6.841927e-03	k: 699	n:110000
KRT71   110000 perm   28 sec   (3916 perm/sec)   p_kst 6.354545e-03   p_cons 2.930909e-02   p_joint 1.018182e-03

Joint ci ratio: 2.145155e-01	ci left: 2.477383e-03	ci right 3.080378e-03	k: 332	n:120000
Cons ci ratio: 6.694993e-02	ci left: 2.684431e-02	ci right 2.871194e-02	k: 3332	n:120000
KS ci ratio: 1.414611e-01	ci left: 5.908367e-03	ci right 6.815737e-03	k: 762	n:120000
KRT71   120000 perm   31 sec   (3849 perm/sec)   p_kst 6.350000e-03   p_cons 2.776667e-02   p_joint 2.766667e-03

Joint ci ratio: 2.138955e-01	ci left: 2.301351e-03	ci right 2.859667e-03	k: 334	n:130000
Cons ci ratio: 6.424797e-02	ci left: 2.694332e-02	ci right 2.873936e-02	k: 3618	n:130000
KS ci ratio: 1.357119e-01	ci left: 5.943978e-03	ci right 6.816722e-03	k: 828	n:130000
KRT71   130000 perm   34 sec   (3784 perm/sec)   p_kst 6.369231e-03   p_cons 2.783077e-02   p_joint 2.569231e-03

Joint ci ratio: 2.199189e-01	ci left: 2.015348e-03	ci right 2.519907e-03	k: 316	n:140000
Cons ci ratio: 6.155750e-02	ci left: 2.728277e-02	ci right 2.902256e-02	k: 3940	n:140000
KS ci ratio: 1.304646e-01	ci left: 5.988963e-03	ci right 6.831676e-03	k: 896	n:140000
KRT71   140000 perm   38 sec   (3719 perm/sec)   p_kst 6.400000e-03   p_cons 2.814286e-02   p_joint 2.257143e-03

Joint ci ratio: 2.268531e-01	ci left: 1.761383e-03	ci right 2.218210e-03	k: 297	n:150000
Cons ci ratio: 5.948834e-02	ci left: 2.729577e-02	ci right 2.897587e-02	k: 4219	n:150000
KS ci ratio: 1.263768e-01	ci left: 5.970393e-03	ci right 6.782198e-03	k: 955	n:150000
KRT71   150000 perm   41 sec   (3658 perm/sec)   p_kst 6.366667e-03   p_cons 2.812667e-02   p_joint 1.980000e-03

Joint ci ratio: 2.291905e-01	ci left: 1.615925e-03	ci right 2.039954e-03	k: 291	n:160000
Cons ci ratio: 5.727503e-02	ci left: 2.762847e-02	ci right 2.926368e-02	k: 4550	n:160000
KS ci ratio: 1.230171e-01	ci left: 5.918151e-03	ci right 6.699900e-03	k: 1008	n:160000
KRT71   160000 perm   44 sec   (3597 perm/sec)   p_kst 6.300000e-03   p_cons 2.843750e-02   p_joint 1.818750e-03

Joint ci ratio: 2.497484e-01	ci left: 1.266457e-03	ci right 1.633236e-03	k: 245	n:170000
Cons ci ratio: 5.564458e-02	ci left: 2.757485e-02	ci right 2.915893e-02	k: 4821	n:170000
KS ci ratio: 1.191242e-01	ci left: 5.952214e-03	ci right 6.711828e-03	k: 1075	n:170000
KRT71   170000 perm   48 sec   (3544 perm/sec)   p_kst 6.323529e-03   p_cons 2.835882e-02   p_joint 1.441176e-03

Joint ci ratio: 1.773912e-01	ci left: 2.465542e-03	ci right 2.950695e-03	k: 486	n:180000
Cons ci ratio: 5.423362e-02	ci left: 2.744007e-02	ci right 2.897518e-02	k: 5076	n:180000
KS ci ratio: 1.157318e-01	ci left: 5.966650e-03	ci right 6.704940e-03	k: 1139	n:180000
KRT71   180000 perm   52 sec   (3471 perm/sec)   p_kst 6.327778e-03   p_cons 2.820000e-02   p_joint 2.700000e-03

Joint ci ratio: 1.719995e-01	ci left: 2.491804e-03	ci right 2.965676e-03	k: 517	n:190000
Cons ci ratio: 5.279248e-02	ci left: 2.745502e-02	ci right 2.894890e-02	k: 5357	n:190000
KS ci ratio: 1.125667e-01	ci left: 5.984957e-03	ci right 6.703914e-03	k: 1204	n:190000
KRT71   190000 perm   56 sec   (3412 perm/sec)   p_kst 6.336842e-03   p_cons 2.819474e-02   p_joint 2.721053e-03

Joint ci ratio: 1.676850e-01	ci left: 2.496476e-03	ci right 2.958124e-03	k: 544	n:200000
Cons ci ratio: 5.153102e-02	ci left: 2.739489e-02	ci right 2.884883e-02	k: 5623	n:200000
KS ci ratio: 1.089592e-01	ci left: 6.079506e-03	ci right 6.784914e-03	k: 1285	n:200000
KRT71   200000 perm   59 sec   (3363 perm/sec)   p_kst 6.425000e-03   p_cons 2.811500e-02   p_joint 2.720000e-03

Joint ci ratio: 1.626845e-01	ci left: 2.532813e-03	ci right 2.985848e-03	k: 578	n:210000
Cons ci ratio: 5.033827e-02	ci left: 2.735970e-02	ci right 2.877718e-02	k: 5893	n:210000
KS ci ratio: 1.061869e-01	ci left: 6.105108e-03	ci right 6.794337e-03	k: 1353	n:210000
KRT71   210000 perm   63 sec   (3311 perm/sec)   p_kst 6.442857e-03   p_cons 2.806190e-02   p_joint 2.752381e-03

Joint ci ratio: 1.639775e-01	ci left: 2.378432e-03	ci right 2.807568e-03	k: 569	n:220000
Cons ci ratio: 4.912637e-02	ci left: 2.743585e-02	ci right 2.882208e-02	k: 6187	n:220000
KS ci ratio: 1.031788e-01	ci left: 6.181731e-03	ci right 6.858642e-03	k: 1433	n:220000
KRT71   220000 perm   67 sec   (3268 perm/sec)   p_kst 6.513636e-03   p_cons 2.812273e-02   p_joint 2.586364e-03

Joint ci ratio: 1.155576e-01	ci left: 4.690484e-03	ci right 5.269926e-03	k: 1144	n:230000
Cons ci ratio: 4.798275e-02	ci left: 2.752293e-02	ci right 2.888030e-02	k: 6485	n:230000
KS ci ratio: 1.010528e-01	ci left: 6.171402e-03	ci right 6.832431e-03	k: 1494	n:230000
KRT71   230000 perm   71 sec   (3225 perm/sec)   p_kst 6.495652e-03   p_cons 2.819565e-02   p_joint 4.973913e-03

Joint ci ratio: 1.188472e-01	ci left: 4.244227e-03	ci right 4.784513e-03	k: 1082	n:240000
Cons ci ratio: 4.698320e-02	ci left: 2.752484e-02	ci right 2.885325e-02	k: 6764	n:240000
KS ci ratio: 9.879776e-02	ci left: 6.194579e-03	ci right 6.842425e-03	k: 1563	n:240000
KRT71   240000 perm   75 sec   (3183 perm/sec)   p_kst 6.512500e-03   p_cons 2.818333e-02   p_joint 4.508333e-03

Joint ci ratio: 1.222486e-01	ci left: 3.845525e-03	ci right 4.350079e-03	k: 1023	n:250000
Cons ci ratio: 4.601337e-02	ci left: 2.756246e-02	ci right 2.886450e-02	k: 7052	n:250000
KS ci ratio: 9.656824e-02	ci left: 6.231668e-03	ci right 6.867853e-03	k: 1636	n:250000
KRT71   250000 perm   80 sec   (3142 perm/sec)   p_kst 6.544000e-03   p_cons 2.820800e-02   p_joint 4.092000e-03

Joint ci ratio: 1.203270e-01	ci left: 3.820689e-03	ci right 4.313544e-03	k: 1056	n:260000
Cons ci ratio: 4.509807e-02	ci left: 2.760126e-02	ci right 2.887852e-02	k: 7341	n:260000
KS ci ratio: 9.498769e-02	ci left: 6.198455e-03	ci right 6.820315e-03	k: 1691	n:260000
KRT71   260000 perm   84 sec   (3101 perm/sec)   p_kst 6.503846e-03   p_cons 2.823462e-02   p_joint 4.061538e-03

Joint ci ratio: 1.490408e-01	ci left: 2.365057e-03	ci right 2.749448e-03	k: 689	n:270000
Cons ci ratio: 4.556443e-02	ci left: 2.607320e-02	ci right 2.729255e-02	k: 7203	n:270000
KS ci ratio: 9.337473e-02	ci left: 6.182251e-03	ci right 6.791378e-03	k: 1750	n:270000
KRT71   270000 perm   88 sec   (3055 perm/sec)   p_kst 6.481481e-03   p_cons 2.667778e-02   p_joint 2.551852e-03

Joint ci ratio: 1.471360e-01	ci left: 2.342493e-03	ci right 2.717922e-03	k: 707	n:280000
Cons ci ratio: 4.471822e-02	ci left: 2.611308e-02	ci right 2.731103e-02	k: 7478	n:280000
KS ci ratio: 9.209766e-02	ci left: 6.132391e-03	ci right 6.727895e-03	k: 1799	n:280000
KRT71   280000 perm   93 sec   (3014 perm/sec)   p_kst 6.425000e-03   p_cons 2.670714e-02   p_joint 2.525000e-03

Joint ci ratio: 1.535824e-01	ci left: 2.069215e-03	ci right 2.416714e-03	k: 649	n:290000
Cons ci ratio: 4.399624e-02	ci left: 2.605830e-02	ci right 2.723394e-02	k: 7726	n:290000
KS ci ratio: 9.045400e-02	ci left: 6.143321e-03	ci right 6.728677e-03	k: 1865	n:290000
KRT71   290000 perm   97 sec   (2976 perm/sec)   p_kst 6.431034e-03   p_cons 2.664138e-02   p_joint 2.237931e-03

Joint ci ratio: 1.565109e-01	ci left: 1.923334e-03	ci right 2.253070e-03	k: 625	n:300000
Cons ci ratio: 4.323856e-02	ci left: 2.608977e-02	ci right 2.724606e-02	k: 7999	n:300000
KS ci ratio: 8.912776e-02	ci left: 6.121016e-03	ci right 6.695249e-03	k: 1921	n:300000
KRT71   300000 perm   102 sec   (2935 perm/sec)   p_kst 6.403333e-03   p_cons 2.666333e-02   p_joint 2.083333e-03

Joint ci ratio: 1.550343e-01	ci left: 1.898489e-03	ci right 2.220610e-03	k: 637	n:310000
Cons ci ratio: 4.256367e-02	ci left: 2.606511e-02	ci right 2.720183e-02	k: 8255	n:310000
KS ci ratio: 8.767992e-02	ci left: 6.125451e-03	ci right 6.690287e-03	k: 1985	n:310000
KRT71   310000 perm   107 sec   (2899 perm/sec)   p_kst 6.403226e-03   p_cons 2.662903e-02   p_joint 2.054839e-03

Joint ci ratio: 1.319611e-01	ci left: 2.568488e-03	ci right 2.934359e-03	k: 879	n:320000
Cons ci ratio: 4.187900e-02	ci left: 2.609161e-02	ci right 2.721074e-02	k: 8527	n:320000
KS ci ratio: 8.365126e-02	ci left: 6.530413e-03	ci right 7.103573e-03	k: 2180	n:320000
KRT71   320000 perm   112 sec   (2865 perm/sec)   p_kst 6.812500e-03   p_cons 2.664688e-02   p_joint 2.746875e-03

Joint ci ratio: 1.303430e-01	ci left: 2.555133e-03	ci right 2.914294e-03	k: 901	n:330000
Cons ci ratio: 4.128423e-02	ci left: 2.604464e-02	ci right 2.714551e-02	k: 8775	n:330000
KS ci ratio: 8.224818e-02	ci left: 6.555083e-03	ci right 7.120296e-03	k: 2255	n:330000
KRT71   330000 perm   117 sec   (2830 perm/sec)   p_kst 6.833333e-03   p_cons 2.659091e-02   p_joint 2.730303e-03

Joint ci ratio: 1.296298e-01	ci left: 2.508434e-03	ci right 2.858952e-03	k: 911	n:340000
Cons ci ratio: 4.066320e-02	ci left: 2.606461e-02	ci right 2.714936e-02	k: 9045	n:340000
KS ci ratio: 8.117680e-02	ci left: 6.535148e-03	ci right 7.090955e-03	k: 2315	n:340000
KRT71   340000 perm   122 sec   (2795 perm/sec)   p_kst 6.808824e-03   p_cons 2.660294e-02   p_joint 2.679412e-03

Joint ci ratio: 1.294925e-01	ci left: 2.442288e-03	ci right 2.783173e-03	k: 913	n:350000
Cons ci ratio: 4.007601e-02	ci left: 2.607506e-02	ci right 2.714422e-02	k: 9312	n:350000
KS ci ratio: 8.006146e-02	ci left: 6.530399e-03	ci right 7.077815e-03	k: 2380	n:350000
KRT71   350000 perm   127 sec   (2763 perm/sec)   p_kst 6.800000e-03   p_cons 2.660571e-02   p_joint 2.608571e-03

Joint ci ratio: 1.325869e-01	ci left: 2.261590e-03	ci right 2.585391e-03	k: 871	n:360000
Cons ci ratio: 3.945435e-02	ci left: 2.616207e-02	ci right 2.721779e-02	k: 9607	n:360000
KS ci ratio: 8.178074e-02	ci left: 6.082228e-03	ci right 6.603544e-03	k: 2282	n:360000
KRT71   360000 perm   132 sec   (2732 perm/sec)   p_kst 6.338889e-03   p_cons 2.668611e-02   p_joint 2.419444e-03

Joint ci ratio: 1.331279e-01	ci left: 2.182170e-03	ci right 2.495976e-03	k: 864	n:370000
Cons ci ratio: 3.888091e-02	ci left: 2.621773e-02	ci right 2.725997e-02	k: 9892	n:370000
KS ci ratio: 8.088369e-02	ci left: 6.052874e-03	ci right 6.565715e-03	k: 2333	n:370000
KRT71   370000 perm   137 sec   (2702 perm/sec)   p_kst 6.305405e-03   p_cons 2.673514e-02   p_joint 2.335135e-03

Joint ci ratio: 1.150686e-01	ci left: 2.869490e-03	ci right 3.222366e-03	k: 1156	n:380000
Cons ci ratio: 3.835501e-02	ci left: 2.623928e-02	ci right 2.726795e-02	k: 10165	n:380000
KS ci ratio: 7.969667e-02	ci left: 6.074102e-03	ci right 6.580839e-03	k: 2403	n:380000
KRT71   380000 perm   142 sec   (2672 perm/sec)   p_kst 6.323684e-03   p_cons 2.675000e-02   p_joint 3.042105e-03

Joint ci ratio: 1.153233e-01	ci left: 2.783455e-03	ci right 3.126560e-03	k: 1151	n:390000
Cons ci ratio: 3.788719e-02	ci left: 2.620900e-02	ci right 2.722369e-02	k: 10418	n:390000
KS ci ratio: 7.873677e-02	ci left: 6.066640e-03	ci right 6.566379e-03	k: 2462	n:390000
KRT71   390000 perm   148 sec   (2644 perm/sec)   p_kst 6.312821e-03   p_cons 2.671282e-02   p_joint 2.951282e-03

Joint ci ratio: 1.142875e-01	ci left: 2.764860e-03	ci right 3.102405e-03	k: 1172	n:400000
Cons ci ratio: 3.742528e-02	ci left: 2.619518e-02	ci right 2.719669e-02	k: 10677	n:400000
KS ci ratio: 7.760970e-02	ci left: 6.091458e-03	ci right 6.585734e-03	k: 2534	n:400000
KRT71   400000 perm   153 sec   (2613 perm/sec)   p_kst 6.335000e-03   p_cons 2.669250e-02   p_joint 2.930000e-03

Joint ci ratio: 1.141453e-01	ci left: 2.704527e-03	ci right 3.034268e-03	k: 1175	n:410000
Cons ci ratio: 3.693997e-02	ci left: 2.623769e-02	ci right 2.722755e-02	k: 10959	n:410000
KS ci ratio: 7.673732e-02	ci left: 6.081618e-03	ci right 6.569301e-03	k: 2592	n:410000
KRT71   410000 perm   159 sec   (2584 perm/sec)   p_kst 6.321951e-03   p_cons 2.672927e-02   p_joint 2.865854e-03

Joint ci ratio: 1.132356e-01	ci left: 2.684084e-03	ci right 3.008549e-03	k: 1194	n:420000
Cons ci ratio: 3.652150e-02	ci left: 2.620983e-02	ci right 2.718719e-02	k: 11212	n:420000
KS ci ratio: 7.582178e-02	ci left: 6.083957e-03	ci right 6.565749e-03	k: 2655	n:420000
KRT71   420000 perm   164 sec   (2555 perm/sec)   p_kst 6.321429e-03   p_cons 2.669524e-02   p_joint 2.842857e-03

Joint ci ratio: 1.126267e-01	ci left: 2.651039e-03	ci right 2.969672e-03	k: 1207	n:430000
Cons ci ratio: 3.613150e-02	ci left: 2.616257e-02	ci right 2.712754e-02	k: 11456	n:430000
KS ci ratio: 7.524521e-02	ci left: 6.036011e-03	ci right 6.510213e-03	k: 2696	n:430000
KRT71   430000 perm   170 sec   (2526 perm/sec)   p_kst 6.269767e-03   p_cons 2.664186e-02   p_joint 2.806977e-03

Joint ci ratio: 1.218218e-01	ci left: 2.204674e-03	ci right 2.492851e-03	k: 1032	n:440000
Cons ci ratio: 3.571924e-02	ci left: 2.616708e-02	ci right 2.712098e-02	k: 11722	n:440000
KS ci ratio: 7.428671e-02	ci left: 6.054948e-03	ci right 6.524316e-03	k: 2766	n:440000
KRT71   440000 perm   176 sec   (2498 perm/sec)   p_kst 6.286364e-03   p_cons 2.664091e-02   p_joint 2.345455e-03

Joint ci ratio: 1.202598e-01	ci left: 2.213865e-03	ci right 2.499270e-03	k: 1059	n:450000
Cons ci ratio: 3.535413e-02	ci left: 2.612298e-02	ci right 2.706535e-02	k: 11966	n:450000
KS ci ratio: 7.333792e-02	ci left: 6.077443e-03	ci right 6.542282e-03	k: 2838	n:450000
KRT71   450000 perm   182 sec   (2472 perm/sec)   p_kst 6.306667e-03   p_cons 2.659111e-02   p_joint 2.353333e-03

Joint ci ratio: 1.196423e-01	ci left: 2.188931e-03	ci right 2.469570e-03	k: 1070	n:460000
Cons ci ratio: 3.497792e-02	ci left: 2.611318e-02	ci right 2.704497e-02	k: 12225	n:460000
KS ci ratio: 7.241206e-02	ci left: 6.101131e-03	ci right 6.561642e-03	k: 2911	n:460000
KRT71   460000 perm   188 sec   (2446 perm/sec)   p_kst 6.328261e-03   p_cons 2.657609e-02   p_joint 2.326087e-03

Joint ci ratio: 1.187047e-01	ci left: 2.177449e-03	ci right 2.454275e-03	k: 1087	n:470000
Cons ci ratio: 3.462059e-02	ci left: 2.609330e-02	ci right 2.701467e-02	k: 12479	n:470000
KS ci ratio: 7.149630e-02	ci left: 6.128026e-03	ci right 6.584475e-03	k: 2986	n:470000
KRT71   470000 perm   194 sec   (2421 perm/sec)   p_kst 6.353191e-03   p_cons 2.655106e-02   p_joint 2.312766e-03

Joint ci ratio: 1.016006e-01	ci left: 2.934545e-03	ci right 3.250666e-03	k: 1483	n:480000
Cons ci ratio: 3.427123e-02	ci left: 2.607843e-02	ci right 2.698980e-02	k: 12735	n:480000
KS ci ratio: 7.052176e-02	ci left: 6.170209e-03	ci right 6.623280e-03	k: 3069	n:480000
KRT71   480000 perm   200 sec   (2396 perm/sec)   p_kst 6.393750e-03   p_cons 2.653125e-02   p_joint 3.089583e-03

Joint ci ratio: 1.006892e-01	ci left: 2.928364e-03	ci right 3.240822e-03	k: 1510	n:490000
Cons ci ratio: 3.393760e-02	ci left: 2.605611e-02	ci right 2.695766e-02	k: 12987	n:490000
KS ci ratio: 6.994412e-02	ci left: 6.146538e-03	ci right 6.594023e-03	k: 3120	n:490000
KRT71   490000 perm   207 sec   (2371 perm/sec)   p_kst 6.367347e-03   p_cons 2.650408e-02   p_joint 3.081633e-03

Joint ci ratio: 1.135475e-01	ci left: 2.242942e-03	ci right 2.514876e-03	k: 1188	n:500000
Cons ci ratio: 3.359789e-02	ci left: 2.605853e-02	ci right 2.695097e-02	k: 13251	n:500000
KS ci ratio: 6.721772e-02	ci left: 6.528838e-03	ci right 6.984906e-03	k: 3377	n:500000
KRT71   500000 perm   213 sec   (2345 perm/sec)   p_kst 6.754000e-03   p_cons 2.650200e-02   p_joint 2.376000e-03

Joint ci ratio: 1.130273e-01	ci left: 2.219918e-03	ci right 2.487746e-03	k: 1199	n:510000
Cons ci ratio: 3.326187e-02	ci left: 2.607062e-02	ci right 2.695437e-02	k: 13520	n:510000
KS ci ratio: 6.659011e-02	ci left: 6.524211e-03	ci right 6.975537e-03	k: 3441	n:510000
KRT71   510000 perm   220 sec   (2322 perm/sec)   p_kst 6.747059e-03   p_cons 2.650980e-02   p_joint 2.350980e-03

Joint ci ratio: 1.120974e-01	ci left: 2.214606e-03	ci right 2.479449e-03	k: 1219	n:520000
Cons ci ratio: 3.293572e-02	ci left: 2.608229e-02	ci right 2.695761e-02	k: 13789	n:520000
KS ci ratio: 6.609372e-02	ci left: 6.497084e-03	ci right 6.943054e-03	k: 3493	n:520000
KRT71   520000 perm   226 sec   (2298 perm/sec)   p_kst 6.717308e-03   p_cons 2.651731e-02   p_joint 2.344231e-03

Joint ci ratio: 1.108323e-01	ci left: 2.224179e-03	ci right 2.486969e-03	k: 1247	n:530000
Cons ci ratio: 3.263569e-02	ci left: 2.606736e-02	ci right 2.693405e-02	k: 14044	n:530000
KS ci ratio: 6.548753e-02	ci left: 6.495121e-03	ci right 6.936712e-03	k: 3558	n:530000
KRT71   530000 perm   233 sec   (2276 perm/sec)   p_kst 6.713208e-03   p_cons 2.649811e-02   p_joint 2.352830e-03

Joint ci ratio: 1.097385e-01	ci left: 2.228010e-03	ci right 2.488486e-03	k: 1272	n:540000
Cons ci ratio: 3.236580e-02	ci left: 2.601810e-02	ci right 2.687588e-02	k: 14280	n:540000
KS ci ratio: 6.482571e-02	ci left: 6.507825e-03	ci right 6.945641e-03	k: 3631	n:540000
KRT71   540000 perm   240 sec   (2254 perm/sec)   p_kst 6.724074e-03   p_cons 2.644444e-02   p_joint 2.355556e-03

Joint ci ratio: 1.044088e-01	ci left: 2.422859e-03	ci right 2.691515e-03	k: 1405	n:550000
Cons ci ratio: 2.968603e-02	ci left: 3.027275e-02	ci right 3.118675e-02	k: 16900	n:550000
KS ci ratio: 6.427095e-02	ci left: 6.502197e-03	ci right 6.935751e-03	k: 3694	n:550000
KRT71   550000 perm   247 sec   (2229 perm/sec)   p_kst 6.716364e-03   p_cons 3.072727e-02   p_joint 2.554545e-03

Joint ci ratio: 1.045978e-01	ci left: 2.370895e-03	ci right 2.634294e-03	k: 1400	n:560000
Cons ci ratio: 2.941475e-02	ci left: 3.028696e-02	ci right 3.119290e-02	k: 17213	n:560000
KS ci ratio: 6.379002e-02	ci left: 6.484483e-03	ci right 6.913501e-03	k: 3750	n:560000
KRT71   560000 perm   254 sec   (2208 perm/sec)   p_kst 6.696429e-03   p_cons 3.073750e-02   p_joint 2.500000e-03

Joint ci ratio: 1.060518e-01	ci left: 2.264383e-03	ci right 2.519664e-03	k: 1362	n:570000
Cons ci ratio: 2.915764e-02	ci left: 3.028678e-02	ci right 3.118466e-02	k: 17518	n:570000
KS ci ratio: 6.325286e-02	ci left: 6.481217e-03	ci right 6.906276e-03	k: 3814	n:570000
KRT71   570000 perm   261 sec   (2187 perm/sec)   p_kst 6.691228e-03   p_cons 3.073333e-02   p_joint 2.389474e-03

Joint ci ratio: 1.051682e-01	ci left: 2.263950e-03	ci right 2.516924e-03	k: 1385	n:580000
Cons ci ratio: 2.891636e-02	ci left: 3.026781e-02	ci right 3.115758e-02	k: 17812	n:580000
KS ci ratio: 6.260729e-02	ci left: 6.503538e-03	ci right 6.925550e-03	k: 3893	n:580000
KRT71   580000 perm   268 sec   (2167 perm/sec)   p_kst 6.712069e-03   p_cons 3.071034e-02   p_joint 2.387931e-03

Joint ci ratio: 1.052084e-01	ci left: 2.223925e-03	ci right 2.472527e-03	k: 1384	n:590000
Cons ci ratio: 2.866872e-02	ci left: 3.027475e-02	ci right 3.115698e-02	k: 18121	n:590000
KS ci ratio: 6.211503e-02	ci left: 6.496754e-03	ci right 6.914892e-03	k: 3955	n:590000
KRT71   590000 perm   275 sec   (2147 perm/sec)   p_kst 6.703390e-03   p_cons 3.071356e-02   p_joint 2.345763e-03

Joint ci ratio: 9.570429e-02	ci left: 2.654853e-03	ci right 2.923316e-03	k: 1672	n:600000
Cons ci ratio: 2.842893e-02	ci left: 3.027819e-02	ci right 3.115302e-02	k: 18428	n:600000
KS ci ratio: 6.154943e-02	ci left: 6.508261e-03	ci right 6.923190e-03	k: 4028	n:600000
KRT71   600000 perm   282 sec   (2128 perm/sec)   p_kst 6.713333e-03   p_cons 3.071333e-02   p_joint 2.786667e-03

Outputting figure to mutsig2_images.part000000000093/KRT71.8_1608_600000_0.0067133_0.030713_0.0027867.png
                gene_name: KRT71
               theta_stop: 0.096 
                    nperm: 600000 
                     p_ks: 0.0067 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0069 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0029 

Current progress: 14 percent done.
KRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
KS ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
KRT2   10000 perm   2 sec   (5168 perm/sec)   p_kst 1.482000e-01   p_cons 1.019000e-01   p_joint 1.790000e-01

Joint ci ratio: 7.330167e-02	ci left: 1.204955e-01	ci right 1.297138e-01	k: 2501	n:20000
Cons ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
KS ci ratio: 6.715852e-02	ci left: 1.406400e-01	ci right 1.504633e-01	k: 2910	n:20000
KRT2   20000 perm   4 sec   (4580 perm/sec)   p_kst 1.455000e-01   p_cons 9.545000e-02   p_joint 1.250500e-01

Outputting figure to mutsig2_images.part000000000093/KRT2.7_1956_20000_0.1455_0.09545_0.12505.png
                gene_name: KRT2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
KRT24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
KS ci ratio: 1.110282e-02	ci left: 9.204880e-01	ci right 9.308624e-01	k: 9258	n:10000
KRT24   10000 perm   2 sec   (5357 perm/sec)   p_kst 9.258000e-01   p_cons 8.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT24.7_1610_10000_0.9258_0.8664_1.png
                gene_name: KRT24
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
KRT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
Cons ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
KS ci ratio: 2.677188e-02	ci left: 6.726697e-01	ci right 6.910243e-01	k: 6819	n:10000
KRT5   10000 perm   2 sec   (5301 perm/sec)   p_kst 6.819000e-01   p_cons 6.032000e-01   p_joint 8.540000e-01

Outputting figure to mutsig2_images.part000000000093/KRT5.7_1809_10000_0.6819_0.6032_0.854.png
                gene_name: KRT5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 18 percent done.
KRT6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
Cons ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
KS ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KRT6A   10000 perm   2 sec   (4556 perm/sec)   p_kst 2.880000e-02   p_cons 2.668000e-01   p_joint 4.210000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 4.649657e-02	ci left: 2.560647e-01	ci right 2.683045e-01	k: 5243	n:20000
KS ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
KRT6A   20000 perm   5 sec   (4147 perm/sec)   p_kst 2.910000e-02   p_cons 2.621500e-01   p_joint 5.675000e-02

Joint ci ratio: 9.595276e-02	ci left: 5.016582e-02	ci right 5.525457e-02	k: 1580	n:30000
Cons ci ratio: 3.729255e-02	ci left: 2.641205e-01	ci right 2.741909e-01	k: 8074	n:30000
KS ci ratio: 1.317389e-01	ci left: 2.677524e-02	ci right 3.058344e-02	k: 859	n:30000
KRT6A   30000 perm   7 sec   (4135 perm/sec)   p_kst 2.863333e-02   p_cons 2.691333e-01   p_joint 5.266667e-02

Joint ci ratio: 8.728690e-02	ci left: 4.590102e-02	ci right 5.011490e-02	k: 1919	n:40000
Cons ci ratio: 3.245855e-02	ci left: 2.628433e-01	ci right 2.715406e-01	k: 10687	n:40000
KS ci ratio: 1.139704e-01	ci left: 2.708559e-02	ci right 3.038330e-02	k: 1148	n:40000
KRT6A   40000 perm   10 sec   (4081 perm/sec)   p_kst 2.870000e-02   p_cons 2.671750e-01   p_joint 4.797500e-02

Joint ci ratio: 6.297458e-02	ci left: 6.965065e-02	ci right 7.419920e-02	k: 3595	n:50000
Cons ci ratio: 2.898889e-02	ci left: 2.638824e-01	ci right 2.716646e-01	k: 13388	n:50000
KS ci ratio: 1.027609e-01	ci left: 2.682491e-02	ci right 2.975020e-02	k: 1413	n:50000
KRT6A   50000 perm   12 sec   (4034 perm/sec)   p_kst 2.826000e-02   p_cons 2.677600e-01   p_joint 7.190000e-02

Joint ci ratio: 6.190100e-02	ci left: 6.070740e-02	ci right 6.460170e-02	k: 3758	n:60000
Cons ci ratio: 2.641015e-02	ci left: 2.650066e-01	ci right 2.721158e-01	k: 16113	n:60000
KS ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
KRT6A   60000 perm   15 sec   (3984 perm/sec)   p_kst 2.830000e-02   p_cons 2.685500e-01   p_joint 6.263333e-02

Outputting figure to mutsig2_images.part000000000093/KRT6A.7_1731_60000_0.0283_0.26855_0.062633.png
                gene_name: KRT6A
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 19 percent done.
KRT75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
Cons ci ratio: 1.714820e-02	ci left: 8.320551e-01	ci right 8.465466e-01	k: 8394	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
KRT75   10000 perm   2 sec   (5564 perm/sec)   p_kst 5.211000e-01   p_cons 8.394000e-01   p_joint 8.314000e-01

Outputting figure to mutsig2_images.part000000000093/KRT75.7_1692_10000_0.5211_0.8394_0.8314.png
                gene_name: KRT75
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 20 percent done.
KRTAP1-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KRTAP1-5   10000 perm   1 sec   (6861 perm/sec)   p_kst 1.000000e-04   p_cons 9.812000e-01   p_joint 2.060000e-02

Joint ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
Cons ci ratio: 3.903384e-03	ci left: 9.785921e-01	ci right 9.824664e-01	k: 19612	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
KRTAP1-5   20000 perm   3 sec   (5880 perm/sec)   p_kst 1.500000e-04   p_cons 9.806000e-01   p_joint 7.550000e-03

Joint ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
Cons ci ratio: 2.973056e-03	ci left: 9.815423e-01	ci right 9.844964e-01	k: 29492	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
KRTAP1-5   30000 perm   5 sec   (5520 perm/sec)   p_kst 1.666667e-04   p_cons 9.830667e-01   p_joint 3.466667e-03

Joint ci ratio: 3.380645e-01	ci left: 2.784672e-03	ci right 3.939287e-03	k: 133	n:40000
Cons ci ratio: 2.634613e-03	ci left: 9.809338e-01	ci right 9.835455e-01	k: 39291	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
KRTAP1-5   40000 perm   8 sec   (5293 perm/sec)   p_kst 1.250000e-04   p_cons 9.822750e-01   p_joint 3.325000e-03

Joint ci ratio: 2.975131e-01	ci left: 2.945803e-03	ci right 3.993152e-03	k: 172	n:50000
Cons ci ratio: 2.334099e-03	ci left: 9.814155e-01	ci right 9.837280e-01	k: 49130	n:50000
KS ci ratio: 1.600221e+00	ci left: 3.247050e-05	ci right 2.333511e-04	k: 5	n:50000
KRTAP1-5   50000 perm   10 sec   (5126 perm/sec)   p_kst 1.000000e-04   p_cons 9.826000e-01   p_joint 3.440000e-03

Joint ci ratio: 2.869801e-01	ci left: 2.655564e-03	ci right 3.560224e-03	k: 185	n:60000
Cons ci ratio: 2.113882e-03	ci left: 9.817963e-01	ci right 9.838899e-01	k: 58972	n:60000
KS ci ratio: 1.481522e+00	ci left: 3.669909e-05	ci right 2.176451e-04	k: 6	n:60000
KRTAP1-5   60000 perm   12 sec   (4978 perm/sec)   p_kst 1.000000e-04   p_cons 9.828667e-01   p_joint 3.083333e-03

Joint ci ratio: 2.760963e-01	ci left: 2.475326e-03	ci right 3.281045e-03	k: 200	n:70000
Cons ci ratio: 1.957500e-03	ci left: 9.818682e-01	ci right 9.838058e-01	k: 68800	n:70000
KS ci ratio: 1.481536e+00	ci left: 3.145626e-05	ci right 1.865545e-04	k: 6	n:70000
KRTAP1-5   70000 perm   14 sec   (4851 perm/sec)   p_kst 8.571429e-05   p_cons 9.828571e-01   p_joint 2.857143e-03

Joint ci ratio: 2.669806e-01	ci left: 2.328974e-03	ci right 3.057836e-03	k: 214	n:80000
Cons ci ratio: 1.830015e-03	ci left: 9.819520e-01	ci right 9.837627e-01	k: 78630	n:80000
KS ci ratio: 1.306585e+00	ci left: 4.317386e-05	ci right 1.970303e-04	k: 8	n:80000
KRTAP1-5   80000 perm   17 sec   (4739 perm/sec)   p_kst 1.000000e-04   p_cons 9.828750e-01   p_joint 2.675000e-03

Joint ci ratio: 2.627670e-01	ci left: 2.142784e-03	ci right 2.801050e-03	k: 221	n:90000
Cons ci ratio: 1.722300e-03	ci left: 9.820659e-01	ci right 9.837695e-01	k: 88464	n:90000
KS ci ratio: 1.181846e+00	ci left: 5.328334e-05	ci right 2.043278e-04	k: 10	n:90000
KRTAP1-5   90000 perm   19 sec   (4639 perm/sec)   p_kst 1.111111e-04   p_cons 9.829333e-01   p_joint 2.455556e-03

Joint ci ratio: 2.856251e-01	ci left: 1.611773e-03	ci right 2.157768e-03	k: 187	n:100000
Cons ci ratio: 1.631595e-03	ci left: 9.821592e-01	ci right 9.837726e-01	k: 98298	n:100000
KS ci ratio: 1.131533e+00	ci left: 5.491284e-05	ci right 1.968118e-04	k: 11	n:100000
KRTAP1-5   100000 perm   22 sec   (4546 perm/sec)   p_kst 1.100000e-04   p_cons 9.829800e-01   p_joint 1.870000e-03

Joint ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
Cons ci ratio: 1.556808e-03	ci left: 9.821722e-01	ci right 9.837113e-01	k: 108125	n:110000
KS ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
KRTAP1-5   110000 perm   25 sec   (4455 perm/sec)   p_kst 1.272727e-04   p_cons 9.829545e-01   p_joint 1.090909e-03

Joint ci ratio: 3.476582e-01	ci left: 8.747511e-04	ci right 1.250034e-03	k: 126	n:120000
Cons ci ratio: 1.484764e-03	ci left: 9.823377e-01	ci right 9.838055e-01	k: 117970	n:120000
KS ci ratio: 9.799306e-01	ci left: 6.996318e-05	ci right 2.061601e-04	k: 15	n:120000
KRTAP1-5   120000 perm   27 sec   (4369 perm/sec)   p_kst 1.250000e-04   p_cons 9.830833e-01   p_joint 1.050000e-03

Joint ci ratio: 3.637990e-01	ci left: 7.303943e-04	ci right 1.061753e-03	k: 115	n:130000
Cons ci ratio: 1.424455e-03	ci left: 9.824160e-01	ci right 9.838239e-01	k: 127807	n:130000
KS ci ratio: 9.799359e-01	ci left: 6.458129e-05	ci right 1.903022e-04	k: 15	n:130000
KRTAP1-5   130000 perm   30 sec   (4288 perm/sec)   p_kst 1.153846e-04   p_cons 9.831308e-01   p_joint 8.846154e-04

Joint ci ratio: 3.518692e-01	ci left: 7.302303e-04	ci right 1.048171e-03	k: 123	n:140000
Cons ci ratio: 1.377134e-03	ci left: 9.823310e-01	ci right 9.836917e-01	k: 137623	n:140000
KS ci ratio: 8.992454e-01	ci left: 7.620130e-05	ci right 2.031907e-04	k: 18	n:140000
KRTAP1-5   140000 perm   33 sec   (4211 perm/sec)   p_kst 1.285714e-04   p_cons 9.830214e-01   p_joint 8.785714e-04

Joint ci ratio: 3.463333e-01	ci left: 7.058752e-04	ci right 1.007292e-03	k: 127	n:150000
Cons ci ratio: 1.329149e-03	ci left: 9.823874e-01	ci right 9.837005e-01	k: 147458	n:150000
KS ci ratio: 8.553514e-01	ci left: 8.144531e-05	ci right 2.059150e-04	k: 20	n:150000
KRTAP1-5   150000 perm   36 sec   (4133 perm/sec)   p_kst 1.333333e-04   p_cons 9.830533e-01   p_joint 8.466667e-04

Joint ci ratio: 3.410504e-01	ci left: 6.845989e-04	ci right 9.714880e-04	k: 131	n:160000
Cons ci ratio: 1.287539e-03	ci left: 9.823928e-01	ci right 9.836646e-01	k: 157286	n:160000
KS ci ratio: 8.553553e-01	ci left: 7.635487e-05	ci right 1.930458e-04	k: 20	n:160000
KRTAP1-5   160000 perm   39 sec   (4059 perm/sec)   p_kst 1.250000e-04   p_cons 9.830375e-01   p_joint 8.187500e-04

Joint ci ratio: 3.107299e-01	ci left: 7.901940e-04	ci right 1.086075e-03	k: 158	n:170000
Cons ci ratio: 1.315159e-03	ci left: 9.805731e-01	ci right 9.818693e-01	k: 166809	n:170000
KS ci ratio: 8.553588e-01	ci left: 7.186331e-05	ci right 1.816905e-04	k: 20	n:170000
KRTAP1-5   170000 perm   43 sec   (3984 perm/sec)   p_kst 1.176471e-04   p_cons 9.812294e-01   p_joint 9.294118e-04

Joint ci ratio: 3.288284e-01	ci left: 6.594160e-04	ci right 9.237569e-04	k: 141	n:180000
Cons ci ratio: 1.273325e-03	ci left: 9.807314e-01	ci right 9.819864e-01	k: 176646	n:180000
KS ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
KRTAP1-5   180000 perm   46 sec   (3914 perm/sec)   p_kst 1.111111e-04   p_cons 9.813667e-01   p_joint 7.833333e-04

Joint ci ratio: 3.220956e-01	ci left: 6.537088e-04	ci right 9.092887e-04	k: 147	n:190000
Cons ci ratio: 1.236797e-03	ci left: 9.808252e-01	ci right 9.820442e-01	k: 186474	n:190000
KS ci ratio: 8.553646e-01	ci left: 6.429862e-05	ci right 1.625658e-04	k: 20	n:190000
KRTAP1-5   190000 perm   49 sec   (3846 perm/sec)   p_kst 1.052632e-04   p_cons 9.814421e-01   p_joint 7.736842e-04

Joint ci ratio: 3.686575e-01	ci left: 4.611239e-04	ci right 6.737872e-04	k: 112	n:200000
Cons ci ratio: 1.208681e-03	ci left: 9.807425e-01	ci right 9.819335e-01	k: 196269	n:200000
KS ci ratio: 8.001166e-01	ci left: 7.290149e-05	ci right 1.725515e-04	k: 23	n:200000
KRTAP1-5   200000 perm   53 sec   (3779 perm/sec)   p_kst 1.150000e-04   p_cons 9.813450e-01   p_joint 5.600000e-04

Joint ci ratio: 3.771043e-01	ci left: 4.175853e-04	ci right 6.156747e-04	k: 107	n:210000
Cons ci ratio: 1.180534e-03	ci left: 9.807261e-01	ci right 9.818892e-01	k: 206076	n:210000
KS ci ratio: 7.687258e-01	ci left: 7.704278e-05	ci right 1.757328e-04	k: 25	n:210000
KRTAP1-5   210000 perm   56 sec   (3720 perm/sec)   p_kst 1.190476e-04   p_cons 9.813143e-01   p_joint 5.095238e-04

Joint ci ratio: 3.686670e-01	ci left: 4.192018e-04	ci right 6.125370e-04	k: 112	n:220000
Cons ci ratio: 1.154548e-03	ci left: 9.807022e-01	ci right 9.818396e-01	k: 215881	n:220000
KS ci ratio: 7.407615e-01	ci left: 8.087955e-05	ci right 1.785568e-04	k: 27	n:220000
KRTAP1-5   220000 perm   60 sec   (3659 perm/sec)   p_kst 1.227273e-04   p_cons 9.812773e-01   p_joint 5.090909e-04

Joint ci ratio: 3.654497e-01	ci left: 4.088688e-04	ci right 5.954000e-04	k: 114	n:230000
Cons ci ratio: 1.132203e-03	ci left: 9.806146e-01	ci right 9.817297e-01	k: 225671	n:230000
KS ci ratio: 7.407637e-01	ci left: 7.736299e-05	ci right 1.707936e-04	k: 27	n:230000
KRTAP1-5   230000 perm   64 sec   (3600 perm/sec)   p_kst 1.173913e-04   p_cons 9.811783e-01   p_joint 4.956522e-04

Joint ci ratio: 3.548092e-01	ci left: 4.183612e-04	ci right 6.023852e-04	k: 121	n:240000
Cons ci ratio: 1.107582e-03	ci left: 9.806529e-01	ci right 9.817437e-01	k: 235489	n:240000
KS ci ratio: 7.040058e-01	ci left: 8.433851e-05	ci right 1.784405e-04	k: 30	n:240000
KRTAP1-5   240000 perm   68 sec   (3547 perm/sec)   p_kst 1.250000e-04   p_cons 9.812042e-01   p_joint 5.041667e-04

Joint ci ratio: 2.073198e-01	ci left: 1.279992e-03	ci right 1.579758e-03	k: 356	n:250000
Cons ci ratio: 1.084617e-03	ci left: 9.806843e-01	ci right 9.817525e-01	k: 245306	n:250000
KS ci ratio: 6.823380e-01	ci left: 8.755350e-05	ci right 1.806930e-04	k: 32	n:250000
KRTAP1-5   250000 perm   72 sec   (3491 perm/sec)   p_kst 1.280000e-04   p_cons 9.812240e-01   p_joint 1.424000e-03

Joint ci ratio: 2.044775e-01	ci left: 1.267239e-03	ci right 1.559441e-03	k: 366	n:260000
Cons ci ratio: 1.064797e-03	ci left: 9.806511e-01	ci right 9.816996e-01	k: 255107	n:260000
KS ci ratio: 6.823398e-01	ci left: 8.418600e-05	ci right 1.737435e-04	k: 32	n:260000
KRTAP1-5   260000 perm   76 sec   (3436 perm/sec)   p_kst 1.230769e-04   p_cons 9.811808e-01   p_joint 1.407692e-03

Joint ci ratio: 2.031021e-01	ci left: 1.237876e-03	ci right 1.521149e-03	k: 371	n:270000
Cons ci ratio: 1.044030e-03	ci left: 9.806919e-01	ci right 9.817199e-01	k: 264927	n:270000
KS ci ratio: 6.722309e-01	ci left: 8.413360e-05	ci right 1.716412e-04	k: 33	n:270000
KRTAP1-5   270000 perm   80 sec   (3383 perm/sec)   p_kst 1.222222e-04   p_cons 9.812111e-01   p_joint 1.374074e-03

Joint ci ratio: 2.031071e-01	ci left: 1.193663e-03	ci right 1.466826e-03	k: 371	n:280000
Cons ci ratio: 1.024530e-03	ci left: 9.807263e-01	ci right 9.817351e-01	k: 274746	n:280000
KS ci ratio: 6.722324e-01	ci left: 8.112878e-05	ci right 1.655113e-04	k: 33	n:280000
KRTAP1-5   280000 perm   84 sec   (3337 perm/sec)   p_kst 1.178571e-04   p_cons 9.812357e-01   p_joint 1.325000e-03

Joint ci ratio: 2.001700e-01	ci left: 1.188518e-03	ci right 1.456090e-03	k: 382	n:290000
Cons ci ratio: 1.006081e-03	ci left: 9.807585e-01	ci right 9.817491e-01	k: 284565	n:290000
KS ci ratio: 6.444018e-01	ci left: 8.694615e-05	ci right 1.718551e-04	k: 36	n:290000
KRTAP1-5   290000 perm   88 sec   (3290 perm/sec)   p_kst 1.241379e-04   p_cons 9.812586e-01   p_joint 1.317241e-03

Joint ci ratio: 1.971064e-01	ci left: 1.186911e-03	ci right 1.449541e-03	k: 394	n:300000
Cons ci ratio: 9.899376e-04	ci left: 9.807380e-01	ci right 9.817126e-01	k: 294369	n:300000
KS ci ratio: 6.444032e-01	ci left: 8.404790e-05	ci right 1.661267e-04	k: 36	n:300000
KRTAP1-5   300000 perm   92 sec   (3248 perm/sec)   p_kst 1.200000e-04   p_cons 9.812300e-01   p_joint 1.313333e-03

Joint ci ratio: 1.941793e-01	ci left: 1.185437e-03	ci right 1.443385e-03	k: 406	n:310000
Cons ci ratio: 9.733513e-04	ci left: 9.807647e-01	ci right 9.817230e-01	k: 304187	n:310000
KS ci ratio: 6.276619e-01	ci left: 8.674677e-05	ci right 1.682477e-04	k: 38	n:310000
KRTAP1-5   310000 perm   97 sec   (3205 perm/sec)   p_kst 1.225806e-04   p_cons 9.812484e-01   p_joint 1.309677e-03

Joint ci ratio: 1.973648e-01	ci left: 1.109754e-03	ci right 1.355671e-03	k: 393	n:320000
Cons ci ratio: 9.596032e-04	ci left: 9.807108e-01	ci right 9.816554e-01	k: 313980	n:320000
KS ci ratio: 6.121610e-01	ci left: 8.930329e-05	ci right 1.702107e-04	k: 40	n:320000
KRTAP1-5   320000 perm   101 sec   (3163 perm/sec)   p_kst 1.250000e-04   p_cons 9.811875e-01   p_joint 1.228125e-03

Joint ci ratio: 1.956362e-01	ci left: 1.096293e-03	ci right 1.336846e-03	k: 400	n:330000
Cons ci ratio: 9.451726e-04	ci left: 9.807094e-01	ci right 9.816397e-01	k: 323789	n:330000
KS ci ratio: 5.977545e-01	ci left: 9.172848e-05	ci right 1.720319e-04	k: 42	n:330000
KRTAP1-5   330000 perm   106 sec   (3121 perm/sec)   p_kst 1.272727e-04   p_cons 9.811788e-01   p_joint 1.212121e-03

Joint ci ratio: 1.927731e-01	ci left: 1.097627e-03	ci right 1.334535e-03	k: 412	n:340000
Cons ci ratio: 9.310774e-04	ci left: 9.807200e-01	ci right 9.816365e-01	k: 333602	n:340000
KS ci ratio: 5.909231e-01	ci left: 9.152886e-05	ci right 1.703513e-04	k: 43	n:340000
KRTAP1-5   340000 perm   110 sec   (3080 perm/sec)   p_kst 1.264706e-04   p_cons 9.811824e-01   p_joint 1.211765e-03

Joint ci ratio: 2.076536e-01	ci left: 9.115528e-04	ci right 1.125418e-03	k: 355	n:350000
Cons ci ratio: 9.167421e-04	ci left: 9.807648e-01	ci right 9.816672e-01	k: 343427	n:350000
KS ci ratio: 5.909242e-01	ci left: 8.891371e-05	ci right 1.654842e-04	k: 43	n:350000
KRTAP1-5   350000 perm   115 sec   (3042 perm/sec)   p_kst 1.228571e-04   p_cons 9.812200e-01   p_joint 1.014286e-03

Joint ci ratio: 2.053596e-01	ci left: 9.073048e-04	ci right 1.117527e-03	k: 363	n:360000
Cons ci ratio: 9.043404e-04	ci left: 9.807539e-01	ci right 9.816439e-01	k: 353233	n:360000
KS ci ratio: 5.843218e-01	ci left: 8.880821e-05	ci right 1.640742e-04	k: 44	n:360000
KRTAP1-5   360000 perm   120 sec   (3004 perm/sec)   p_kst 1.222222e-04   p_cons 9.812028e-01   p_joint 1.008333e-03

Joint ci ratio: 2.025956e-01	ci left: 9.084297e-04	ci right 1.115729e-03	k: 373	n:370000
Cons ci ratio: 8.924934e-04	ci left: 9.807408e-01	ci right 9.816192e-01	k: 363038	n:370000
KS ci ratio: 5.843228e-01	ci left: 8.640796e-05	ci right 1.596398e-04	k: 44	n:370000
KRTAP1-5   370000 perm   125 sec   (2965 perm/sec)   p_kst 1.189189e-04   p_cons 9.811838e-01   p_joint 1.008108e-03

Joint ci ratio: 2.048027e-01	ci left: 8.645428e-04	ci right 1.064246e-03	k: 365	n:380000
Cons ci ratio: 8.814128e-04	ci left: 9.807153e-01	ci right 9.815826e-01	k: 372838	n:380000
KS ci ratio: 5.843237e-01	ci left: 8.413403e-05	ci right 1.554389e-04	k: 44	n:380000
KRTAP1-5   380000 perm   130 sec   (2928 perm/sec)   p_kst 1.157895e-04   p_cons 9.811526e-01   p_joint 9.605263e-04

Joint ci ratio: 2.004661e-01	ci left: 8.813200e-04	ci right 1.080060e-03	k: 381	n:390000
Cons ci ratio: 8.702505e-04	ci left: 9.807118e-01	ci right 9.815682e-01	k: 382646	n:390000
KS ci ratio: 5.779376e-01	ci left: 8.416354e-05	ci right 1.543907e-04	k: 45	n:390000
KRTAP1-5   390000 perm   135 sec   (2892 perm/sec)   p_kst 1.153846e-04   p_cons 9.811436e-01   p_joint 9.769231e-04

Joint ci ratio: 1.976404e-01	ci left: 8.854167e-04	ci right 1.081928e-03	k: 392	n:400000
Cons ci ratio: 8.596757e-04	ci left: 9.807011e-01	ci right 9.815470e-01	k: 392451	n:400000
KS ci ratio: 5.779385e-01	ci left: 8.205942e-05	ci right 1.505310e-04	k: 45	n:400000
KRTAP1-5   400000 perm   140 sec   (2856 perm/sec)   p_kst 1.125000e-04   p_cons 9.811275e-01   p_joint 9.800000e-04

Joint ci ratio: 2.062247e-01	ci left: 7.897128e-04	ci right 9.735565e-04	k: 360	n:410000
Cons ci ratio: 8.498679e-04	ci left: 9.806736e-01	ci right 9.815098e-01	k: 402249	n:410000
KS ci ratio: 5.717573e-01	ci left: 8.214206e-05	ci right 1.496498e-04	k: 46	n:410000
KRTAP1-5   410000 perm   145 sec   (2821 perm/sec)   p_kst 1.121951e-04   p_cons 9.810951e-01   p_joint 8.780488e-04

Joint ci ratio: 2.048121e-01	ci left: 7.822019e-04	ci right 9.628936e-04	k: 365	n:420000
Cons ci ratio: 8.400089e-04	ci left: 9.806644e-01	ci right 9.814908e-01	k: 412054	n:420000
KS ci ratio: 5.717581e-01	ci left: 8.018627e-05	ci right 1.460867e-04	k: 46	n:420000
KRTAP1-5   420000 perm   151 sec   (2789 perm/sec)   p_kst 1.095238e-04   p_cons 9.810810e-01   p_joint 8.690476e-04

Joint ci ratio: 2.140888e-01	ci left: 6.956942e-04	ci right 8.646382e-04	k: 334	n:430000
Cons ci ratio: 8.294445e-04	ci left: 9.807027e-01	ci right 9.815187e-01	k: 421879	n:430000
KS ci ratio: 5.717589e-01	ci left: 7.832145e-05	ci right 1.426894e-04	k: 46	n:430000
KRTAP1-5   430000 perm   156 sec   (2756 perm/sec)   p_kst 1.069767e-04   p_cons 9.811140e-01   p_joint 7.767442e-04

Joint ci ratio: 2.121974e-01	ci left: 6.927913e-04	ci right 8.593507e-04	k: 340	n:440000
Cons ci ratio: 8.202222e-04	ci left: 9.806956e-01	ci right 9.815026e-01	k: 431685	n:440000
KS ci ratio: 5.717596e-01	ci left: 7.654140e-05	ci right 1.394466e-04	k: 46	n:440000
KRTAP1-5   440000 perm   161 sec   (2726 perm/sec)   p_kst 1.045455e-04   p_cons 9.811023e-01   p_joint 7.727273e-04

Joint ci ratio: 2.100526e-01	ci left: 6.921290e-04	ci right 8.566309e-04	k: 347	n:450000
Cons ci ratio: 8.101823e-04	ci left: 9.807406e-01	ci right 9.815377e-01	k: 441514	n:450000
KS ci ratio: 5.657725e-01	ci left: 7.674283e-05	ci right 1.388866e-04	k: 47	n:450000
KRTAP1-5   450000 perm   167 sec   (2695 perm/sec)   p_kst 1.044444e-04   p_cons 9.811422e-01   p_joint 7.711111e-04

Joint ci ratio: 2.079715e-01	ci left: 6.915036e-04	ci right 8.540213e-04	k: 354	n:460000
Cons ci ratio: 8.014406e-04	ci left: 9.807397e-01	ci right 9.815281e-01	k: 451323	n:460000
KS ci ratio: 5.543410e-01	ci left: 7.880638e-05	ci right 1.408250e-04	k: 49	n:460000
KRTAP1-5   460000 perm   173 sec   (2665 perm/sec)   p_kst 1.065217e-04   p_cons 9.811370e-01   p_joint 7.695652e-04

Joint ci ratio: 2.051023e-01	ci left: 6.969672e-04	ci right 8.582258e-04	k: 364	n:470000
Cons ci ratio: 7.932037e-04	ci left: 9.807281e-01	ci right 9.815085e-01	k: 461127	n:470000
KS ci ratio: 5.384225e-01	ci left: 8.263104e-05	ci right 1.450849e-04	k: 52	n:470000
KRTAP1-5   470000 perm   178 sec   (2635 perm/sec)   p_kst 1.106383e-04   p_cons 9.811213e-01   p_joint 7.744681e-04

Joint ci ratio: 2.131446e-01	ci left: 6.291393e-04	ci right 7.811589e-04	k: 337	n:480000
Cons ci ratio: 7.841997e-04	ci left: 9.807655e-01	ci right 9.815370e-01	k: 470954	n:480000
KS ci ratio: 5.285419e-01	ci left: 8.451456e-05	ci right 1.467856e-04	k: 54	n:480000
KRTAP1-5   480000 perm   184 sec   (2604 perm/sec)   p_kst 1.125000e-04   p_cons 9.811542e-01   p_joint 7.020833e-04

Joint ci ratio: 2.115858e-01	ci left: 6.259610e-04	ci right 7.759630e-04	k: 342	n:490000
Cons ci ratio: 7.759218e-04	ci left: 9.807808e-01	ci right 9.815441e-01	k: 480771	n:490000
KS ci ratio: 5.285425e-01	ci left: 8.278975e-05	ci right 1.437900e-04	k: 54	n:490000
KRTAP1-5   490000 perm   190 sec   (2575 perm/sec)   p_kst 1.102041e-04   p_cons 9.811653e-01   p_joint 6.979592e-04

Joint ci ratio: 2.153911e-01	ci left: 5.907237e-04	ci right 7.351642e-04	k: 330	n:500000
Cons ci ratio: 7.688145e-04	ci left: 9.807511e-01	ci right 9.815073e-01	k: 490566	n:500000
KS ci ratio: 5.285431e-01	ci left: 8.113393e-05	ci right 1.409143e-04	k: 54	n:500000
KRTAP1-5   500000 perm   196 sec   (2545 perm/sec)   p_kst 1.080000e-04   p_cons 9.811320e-01   p_joint 6.600000e-04

Joint ci ratio: 2.125208e-01	ci left: 5.958425e-04	ci right 7.393402e-04	k: 339	n:510000
Cons ci ratio: 7.619772e-04	ci left: 9.807186e-01	ci right 9.814681e-01	k: 500359	n:510000
KS ci ratio: 5.191872e-01	ci left: 8.294573e-05	ci right 1.425872e-04	k: 56	n:510000
KRTAP1-5   510000 perm   203 sec   (2516 perm/sec)   p_kst 1.098039e-04   p_cons 9.810961e-01   p_joint 6.647059e-04

Joint ci ratio: 2.173743e-01	ci left: 5.570893e-04	ci right 6.947273e-04	k: 324	n:520000
Cons ci ratio: 7.551602e-04	ci left: 9.806952e-01	ci right 9.814379e-01	k: 510156	n:520000
KS ci ratio: 5.146920e-01	ci left: 8.302265e-05	ci right 1.420171e-04	k: 57	n:520000
KRTAP1-5   520000 perm   209 sec   (2490 perm/sec)   p_kst 1.096154e-04   p_cons 9.810692e-01   p_joint 6.230769e-04

Joint ci ratio: 2.150704e-01	ci left: 5.590706e-04	ci right 6.955409e-04	k: 331	n:530000
Cons ci ratio: 7.483316e-04	ci left: 9.806822e-01	ci right 9.814182e-01	k: 519958	n:530000
KS ci ratio: 5.146926e-01	ci left: 8.145616e-05	ci right 1.393376e-04	k: 57	n:530000
KRTAP1-5   530000 perm   215 sec   (2463 perm/sec)   p_kst 1.075472e-04   p_cons 9.810528e-01   p_joint 6.245283e-04

Joint ci ratio: 2.125247e-01	ci left: 5.627391e-04	ci right 6.982672e-04	k: 339	n:540000
Cons ci ratio: 7.412414e-04	ci left: 9.806922e-01	ci right 9.814212e-01	k: 529772	n:540000
KS ci ratio: 5.018758e-01	ci left: 8.479052e-05	ci right 1.430197e-04	k: 60	n:540000
KRTAP1-5   540000 perm   222 sec   (2434 perm/sec)   p_kst 1.111111e-04   p_cons 9.810593e-01   p_joint 6.277778e-04

Joint ci ratio: 2.100674e-01	ci left: 5.662834e-04	ci right 7.008853e-04	k: 347	n:550000
Cons ci ratio: 7.346004e-04	ci left: 9.806890e-01	ci right 9.814114e-01	k: 539579	n:550000
KS ci ratio: 4.978120e-01	ci left: 8.483770e-05	ci right 1.424651e-04	k: 61	n:550000
KRTAP1-5   550000 perm   228 sec   (2408 perm/sec)   p_kst 1.109091e-04   p_cons 9.810527e-01   p_joint 6.309091e-04

Joint ci ratio: 2.128405e-01	ci left: 5.409500e-04	ci right 6.714493e-04	k: 338	n:560000
Cons ci ratio: 7.273302e-04	ci left: 9.807273e-01	ci right 9.814427e-01	k: 549409	n:560000
KS ci ratio: 4.978125e-01	ci left: 8.332272e-05	ci right 1.399211e-04	k: 61	n:560000
KRTAP1-5   560000 perm   235 sec   (2384 perm/sec)   p_kst 1.089286e-04   p_cons 9.810875e-01   p_joint 6.035714e-04

Joint ci ratio: 2.106763e-01	ci left: 5.430892e-04	ci right 6.726004e-04	k: 345	n:570000
Cons ci ratio: 7.204057e-04	ci left: 9.807573e-01	ci right 9.814658e-01	k: 559235	n:570000
KS ci ratio: 4.861880e-01	ci left: 8.647086e-05	ci right 1.433777e-04	k: 64	n:570000
KRTAP1-5   570000 perm   242 sec   (2360 perm/sec)   p_kst 1.122807e-04   p_cons 9.811140e-01   p_joint 6.052632e-04

Joint ci ratio: 2.085769e-01	ci left: 5.451611e-04	ci right 6.737054e-04	k: 352	n:580000
Cons ci ratio: 7.133746e-04	ci left: 9.808020e-01	ci right 9.815036e-01	k: 569070	n:580000
KS ci ratio: 4.788761e-01	ci left: 8.800864e-05	ci right 1.447705e-04	k: 66	n:580000
KRTAP1-5   580000 perm   248 sec   (2336 perm/sec)   p_kst 1.137931e-04   p_cons 9.811552e-01   p_joint 6.068966e-04

Joint ci ratio: 2.074054e-01	ci left: 5.423475e-04	ci right 6.694191e-04	k: 356	n:590000
Cons ci ratio: 7.074827e-04	ci left: 9.807955e-01	ci right 9.814913e-01	k: 578876	n:590000
KS ci ratio: 4.718845e-01	ci left: 8.950050e-05	ci right 1.461100e-04	k: 68	n:590000
KRTAP1-5   590000 perm   255 sec   (2313 perm/sec)   p_kst 1.152542e-04   p_cons 9.811458e-01   p_joint 6.033898e-04

Joint ci ratio: 2.062535e-01	ci left: 5.396297e-04	ci right 6.652737e-04	k: 360	n:600000
Cons ci ratio: 7.018290e-04	ci left: 9.807842e-01	ci right 9.814744e-01	k: 588679	n:600000
KS ci ratio: 4.619483e-01	ci left: 9.242044e-05	ci right 1.492591e-04	k: 71	n:600000
KRTAP1-5   600000 perm   262 sec   (2289 perm/sec)   p_kst 1.183333e-04   p_cons 9.811317e-01   p_joint 6.000000e-04

Joint ci ratio: 2.045606e-01	ci left: 5.401135e-04	ci right 6.647088e-04	k: 366	n:610000
Cons ci ratio: 6.961542e-04	ci left: 9.807816e-01	ci right 9.814663e-01	k: 598487	n:610000
KS ci ratio: 4.619488e-01	ci left: 9.090533e-05	ci right 1.468123e-04	k: 71	n:610000
KRTAP1-5   610000 perm   269 sec   (2267 perm/sec)   p_kst 1.163934e-04   p_cons 9.811262e-01   p_joint 6.000000e-04

Joint ci ratio: 2.031814e-01	ci left: 5.390548e-04	ci right 6.624634e-04	k: 371	n:620000
Cons ci ratio: 6.910357e-04	ci left: 9.807564e-01	ci right 9.814359e-01	k: 608281	n:620000
KS ci ratio: 4.587739e-01	ci left: 9.086489e-05	ci right 1.462431e-04	k: 72	n:620000
KRTAP1-5   620000 perm   276 sec   (2246 perm/sec)   p_kst 1.161290e-04   p_cons 9.810984e-01   p_joint 5.983871e-04

Joint ci ratio: 2.023675e-01	ci left: 5.350184e-04	ci right 6.569516e-04	k: 374	n:630000
Cons ci ratio: 6.848241e-04	ci left: 9.807976e-01	ci right 9.814710e-01	k: 618116	n:630000
KS ci ratio: 4.556636e-01	ci left: 9.082701e-05	ci right 1.456907e-04	k: 73	n:630000
KRTAP1-5   630000 perm   283 sec   (2224 perm/sec)   p_kst 1.158730e-04   p_cons 9.811365e-01   p_joint 5.936508e-04

Joint ci ratio: 2.002425e-01	ci left: 5.385288e-04	ci right 6.598159e-04	k: 382	n:640000
Cons ci ratio: 6.792047e-04	ci left: 9.808139e-01	ci right 9.814818e-01	k: 627936	n:640000
KS ci ratio: 4.466982e-01	ci left: 9.356260e-05	ci right 1.486311e-04	k: 76	n:640000
KRTAP1-5   640000 perm   290 sec   (2203 perm/sec)   p_kst 1.187500e-04   p_cons 9.811500e-01   p_joint 5.968750e-04

Joint ci ratio: 1.986923e-01	ci left: 5.390135e-04	ci right 6.593560e-04	k: 388	n:650000
Cons ci ratio: 6.735809e-04	ci left: 9.808374e-01	ci right 9.814998e-01	k: 637761	n:650000
KS ci ratio: 4.410073e-01	ci left: 9.485614e-05	ci right 1.497632e-04	k: 78	n:650000
KRTAP1-5   650000 perm   298 sec   (2182 perm/sec)   p_kst 1.200000e-04   p_cons 9.811708e-01   p_joint 5.969231e-04

Joint ci ratio: 1.971774e-01	ci left: 5.394870e-04	ci right 6.589066e-04	k: 394	n:660000
Cons ci ratio: 6.684776e-04	ci left: 9.808389e-01	ci right 9.814963e-01	k: 647572	n:660000
KS ci ratio: 4.382424e-01	ci left: 9.476633e-05	ci right 1.491759e-04	k: 79	n:660000
KRTAP1-5   660000 perm   305 sec   (2161 perm/sec)   p_kst 1.196970e-04   p_cons 9.811697e-01   p_joint 5.969697e-04

Joint ci ratio: 1.400074e-01	ci left: 1.086825e-03	ci right 1.251865e-03	k: 782	n:670000
Cons ci ratio: 6.631669e-04	ci left: 9.808584e-01	ci right 9.815106e-01	k: 657395	n:670000
KS ci ratio: 4.328648e-01	ci left: 9.600962e-05	ci right 1.502599e-04	k: 81	n:670000
KRTAP1-5   670000 perm   313 sec   (2141 perm/sec)   p_kst 1.208955e-04   p_cons 9.811866e-01   p_joint 1.167164e-03

Joint ci ratio: 1.442188e-01	ci left: 1.007016e-03	ci right 1.164931e-03	k: 737	n:680000
Cons ci ratio: 6.937038e-04	ci left: 9.788076e-01	ci right 9.794883e-01	k: 665822	n:680000
KS ci ratio: 4.276803e-01	ci left: 9.722031e-05	ci right 1.513081e-04	k: 83	n:680000
KRTAP1-5   680000 perm   321 sec   (2121 perm/sec)   p_kst 1.220588e-04   p_cons 9.791500e-01   p_joint 1.083824e-03

Joint ci ratio: 1.426799e-01	ci left: 1.014778e-03	ci right 1.172068e-03	k: 753	n:690000
Cons ci ratio: 6.891592e-04	ci left: 9.787802e-01	ci right 9.794564e-01	k: 675593	n:690000
KS ci ratio: 4.202413e-01	ci left: 9.969523e-05	ci right 1.539243e-04	k: 86	n:690000
KRTAP1-5   690000 perm   328 sec   (2102 perm/sec)   p_kst 1.246377e-04   p_cons 9.791203e-01   p_joint 1.091304e-03

Joint ci ratio: 1.448115e-01	ci left: 9.699809e-04	ci right 1.122768e-03	k: 731	n:700000
Cons ci ratio: 6.842473e-04	ci left: 9.787809e-01	ci right 9.794523e-01	k: 685383	n:700000
KS ci ratio: 4.202417e-01	ci left: 9.827099e-05	ci right 1.517254e-04	k: 86	n:700000
KRTAP1-5   700000 perm   336 sec   (2084 perm/sec)   p_kst 1.228571e-04   p_cons 9.791186e-01   p_joint 1.044286e-03

Joint ci ratio: 1.460156e-01	ci left: 9.400316e-04	ci right 1.089440e-03	k: 719	n:710000
Cons ci ratio: 6.796964e-04	ci left: 9.787660e-01	ci right 9.794329e-01	k: 695162	n:710000
KS ci ratio: 4.131778e-01	ci left: 1.006692e-04	ci right 1.542543e-04	k: 89	n:710000
KRTAP1-5   710000 perm   344 sec   (2066 perm/sec)   p_kst 1.253521e-04   p_cons 9.791014e-01   p_joint 1.012676e-03

Joint ci ratio: 1.453112e-01	ci left: 9.363434e-04	ci right 1.084385e-03	k: 726	n:720000
Cons ci ratio: 6.753491e-04	ci left: 9.787446e-01	ci right 9.794071e-01	k: 704936	n:720000
KS ci ratio: 4.131782e-01	ci left: 9.927101e-05	ci right 1.521119e-04	k: 89	n:720000
KRTAP1-5   720000 perm   352 sec   (2047 perm/sec)   p_kst 1.236111e-04   p_cons 9.790778e-01   p_joint 1.008333e-03

Joint ci ratio: 1.446170e-01	ci left: 9.327579e-04	ci right 1.079467e-03	k: 733	n:730000
Cons ci ratio: 6.712626e-04	ci left: 9.787127e-01	ci right 9.793712e-01	k: 714702	n:730000
KS ci ratio: 4.131785e-01	ci left: 9.791112e-05	ci right 1.500282e-04	k: 89	n:730000
KRTAP1-5   730000 perm   360 sec   (2029 perm/sec)   p_kst 1.219178e-04   p_cons 9.790438e-01   p_joint 1.004110e-03

Joint ci ratio: 1.438355e-01	ci left: 9.305736e-04	ci right 1.076081e-03	k: 741	n:740000
Cons ci ratio: 6.664136e-04	ci left: 9.787334e-01	ci right 9.793872e-01	k: 724506	n:740000
KS ci ratio: 4.131789e-01	ci left: 9.658798e-05	ci right 1.480009e-04	k: 89	n:740000
KRTAP1-5   740000 perm   368 sec   (2010 perm/sec)   p_kst 1.202703e-04   p_cons 9.790622e-01   p_joint 1.001351e-03

Joint ci ratio: 1.513751e-01	ci left: 8.257057e-04	ci right 9.621966e-04	k: 669	n:750000
Cons ci ratio: 6.619905e-04	ci left: 9.787334e-01	ci right 9.793829e-01	k: 734295	n:750000
KS ci ratio: 4.086629e-01	ci left: 9.769112e-05	ci right 1.489684e-04	k: 91	n:750000
KRTAP1-5   750000 perm   376 sec   (1993 perm/sec)   p_kst 1.213333e-04   p_cons 9.790600e-01   p_joint 8.920000e-04

Joint ci ratio: 1.501473e-01	ci left: 8.287690e-04	ci right 9.645553e-04	k: 680	n:760000
Cons ci ratio: 6.574645e-04	ci left: 9.787454e-01	ci right 9.793904e-01	k: 744093	n:760000
KS ci ratio: 4.042919e-01	ci left: 9.876821e-05	ci right 1.499075e-04	k: 93	n:760000
KRTAP1-5   760000 perm   385 sec   (1976 perm/sec)   p_kst 1.223684e-04   p_cons 9.790697e-01   p_joint 8.947368e-04

Joint ci ratio: 1.491649e-01	ci left: 8.292564e-04	ci right 9.641543e-04	k: 689	n:770000
Cons ci ratio: 6.532576e-04	ci left: 9.787427e-01	ci right 9.793836e-01	k: 753880	n:770000
KS ci ratio: 4.042922e-01	ci left: 9.748549e-05	ci right 1.479607e-04	k: 93	n:770000
KRTAP1-5   770000 perm   393 sec   (1959 perm/sec)   p_kst 1.207792e-04   p_cons 9.790649e-01   p_joint 8.948052e-04

Joint ci ratio: 1.483077e-01	ci left: 8.284996e-04	ci right 9.624312e-04	k: 697	n:780000
Cons ci ratio: 6.492521e-04	ci left: 9.787323e-01	ci right 9.793692e-01	k: 763661	n:780000
KS ci ratio: 4.021588e-01	ci left: 9.738769e-05	ci right 1.474752e-04	k: 94	n:780000
KRTAP1-5   780000 perm   401 sec   (1943 perm/sec)   p_kst 1.205128e-04   p_cons 9.790526e-01   p_joint 8.935897e-04

Joint ci ratio: 1.471525e-01	ci left: 8.314217e-04	ci right 9.646868e-04	k: 708	n:790000
Cons ci ratio: 6.447816e-04	ci left: 9.787567e-01	ci right 9.793892e-01	k: 773469	n:790000
KS ci ratio: 3.979910e-01	ci left: 9.843184e-05	ci right 1.483935e-04	k: 96	n:790000
KRTAP1-5   790000 perm   410 sec   (1928 perm/sec)   p_kst 1.215190e-04   p_cons 9.790747e-01   p_joint 8.962025e-04

Joint ci ratio: 1.462273e-01	ci left: 8.318660e-04	ci right 9.642908e-04	k: 717	n:800000
Cons ci ratio: 6.404993e-04	ci left: 9.787741e-01	ci right 9.794024e-01	k: 783272	n:800000
KS ci ratio: 3.939502e-01	ci left: 9.945251e-05	ci right 1.492863e-04	k: 98	n:800000
KRTAP1-5   800000 perm   418 sec   (1912 perm/sec)   p_kst 1.225000e-04   p_cons 9.790900e-01   p_joint 8.962500e-04

Joint ci ratio: 1.459234e-01	ci left: 8.251642e-04	ci right 9.562252e-04	k: 720	n:810000
Cons ci ratio: 6.367806e-04	ci left: 9.787600e-01	ci right 9.793847e-01	k: 793050	n:810000
KS ci ratio: 3.900300e-01	ci left: 1.004505e-04	ci right 1.501545e-04	k: 100	n:810000
KRTAP1-5   810000 perm   427 sec   (1897 perm/sec)   p_kst 1.234568e-04   p_cons 9.790741e-01   p_joint 8.888889e-04

Joint ci ratio: 1.460255e-01	ci left: 8.139259e-04	ci right 9.433003e-04	k: 719	n:820000
Cons ci ratio: 6.327301e-04	ci left: 9.787721e-01	ci right 9.793928e-01	k: 802849	n:820000
KS ci ratio: 3.843630e-01	ci left: 1.025279e-04	ci right 1.523363e-04	k: 103	n:820000
KRTAP1-5   820000 perm   436 sec   (1882 perm/sec)   p_kst 1.256098e-04   p_cons 9.790841e-01   p_joint 8.768293e-04

Joint ci ratio: 1.455215e-01	ci left: 8.099238e-04	ci right 9.381791e-04	k: 724	n:830000
Cons ci ratio: 6.286078e-04	ci left: 9.787936e-01	ci right 9.794103e-01	k: 812656	n:830000
KS ci ratio: 3.843633e-01	ci left: 1.012926e-04	ci right 1.505010e-04	k: 103	n:830000
KRTAP1-5   830000 perm   445 sec   (1867 perm/sec)   p_kst 1.240964e-04   p_cons 9.791036e-01   p_joint 8.722892e-04

Joint ci ratio: 1.511567e-01	ci left: 7.395256e-04	ci right 8.615783e-04	k: 671	n:840000
Cons ci ratio: 6.244917e-04	ci left: 9.788194e-01	ci right 9.794320e-01	k: 822467	n:840000
KS ci ratio: 3.843636e-01	ci left: 1.000867e-04	ci right 1.487093e-04	k: 103	n:840000
KRTAP1-5   840000 perm   454 sec   (1852 perm/sec)   p_kst 1.226190e-04   p_cons 9.791274e-01   p_joint 7.988095e-04

Joint ci ratio: 1.503756e-01	ci left: 7.387499e-04	ci right 8.599878e-04	k: 678	n:850000
Cons ci ratio: 6.204188e-04	ci left: 9.788470e-01	ci right 9.794556e-01	k: 832280	n:850000
KS ci ratio: 3.807201e-01	ci left: 1.010359e-04	ci right 1.495379e-04	k: 105	n:850000
KRTAP1-5   850000 perm   463 sec   (1837 perm/sec)   p_kst 1.235294e-04   p_cons 9.791529e-01   p_joint 7.976471e-04

Joint ci ratio: 1.493887e-01	ci left: 7.402325e-04	ci right 8.608452e-04	k: 687	n:860000
Cons ci ratio: 6.165292e-04	ci left: 9.788669e-01	ci right 9.794717e-01	k: 842087	n:860000
KS ci ratio: 3.807204e-01	ci left: 9.986105e-05	ci right 1.477991e-04	k: 105	n:860000
KRTAP1-5   860000 perm   472 sec   (1823 perm/sec)   p_kst 1.220930e-04   p_cons 9.791709e-01   p_joint 7.988372e-04

Joint ci ratio: 1.504879e-01	ci left: 7.206605e-04	ci right 8.390260e-04	k: 677	n:870000
Cons ci ratio: 6.124521e-04	ci left: 9.789037e-01	ci right 9.795046e-01	k: 851909	n:870000
KS ci ratio: 3.789372e-01	ci left: 9.975290e-05	ci right 1.473590e-04	k: 106	n:870000
KRTAP1-5   870000 perm   481 sec   (1808 perm/sec)   p_kst 1.218391e-04   p_cons 9.792057e-01   p_joint 7.781609e-04

Joint ci ratio: 1.496079e-01	ci left: 7.212207e-04	ci right 8.389236e-04	k: 685	n:880000
Cons ci ratio: 6.087082e-04	ci left: 9.789226e-01	ci right 9.795197e-01	k: 861716	n:880000
KS ci ratio: 3.771788e-01	ci left: 9.964772e-05	ci right 1.469283e-04	k: 107	n:880000
KRTAP1-5   880000 perm   491 sec   (1794 perm/sec)   p_kst 1.215909e-04   p_cons 9.792227e-01   p_joint 7.784091e-04

Joint ci ratio: 1.485290e-01	ci left: 7.239341e-04	ci right 8.411521e-04	k: 695	n:890000
Cons ci ratio: 6.057335e-04	ci left: 9.788935e-01	ci right 9.794877e-01	k: 871481	n:890000
KS ci ratio: 3.754447e-01	ci left: 9.954540e-05	ci right 1.465068e-04	k: 108	n:890000
KRTAP1-5   890000 perm   500 sec   (1780 perm/sec)   p_kst 1.213483e-04   p_cons 9.791921e-01   p_joint 7.808989e-04

Joint ci ratio: 1.476827e-01	ci left: 7.244499e-04	ci right 8.410240e-04	k: 703	n:900000
Cons ci ratio: 6.022261e-04	ci left: 9.789042e-01	ci right 9.794950e-01	k: 881281	n:900000
KS ci ratio: 3.754450e-01	ci left: 9.843933e-05	ci right 1.448790e-04	k: 108	n:900000
KRTAP1-5   900000 perm   510 sec   (1764 perm/sec)   p_kst 1.200000e-04   p_cons 9.792011e-01   p_joint 7.811111e-04

Joint ci ratio: 1.468506e-01	ci left: 7.249562e-04	ci right 8.408969e-04	k: 711	n:910000
Cons ci ratio: 5.989080e-04	ci left: 9.789058e-01	ci right 9.794933e-01	k: 891073	n:910000
KS ci ratio: 3.737345e-01	ci left: 9.835302e-05	ci right 1.444888e-04	k: 109	n:910000
KRTAP1-5   910000 perm   520 sec   (1751 perm/sec)   p_kst 1.197802e-04   p_cons 9.792011e-01   p_joint 7.813187e-04

Joint ci ratio: 1.463379e-01	ci left: 7.223116e-04	ci right 8.373908e-04	k: 716	n:920000
Cons ci ratio: 5.958667e-04	ci left: 9.788921e-01	ci right 9.794766e-01	k: 900851	n:920000
KS ci ratio: 3.737348e-01	ci left: 9.728396e-05	ci right 1.429183e-04	k: 109	n:920000
KRTAP1-5   920000 perm   530 sec   (1734 perm/sec)   p_kst 1.184783e-04   p_cons 9.791859e-01   p_joint 7.782609e-04

Joint ci ratio: 1.452279e-01	ci left: 7.259414e-04	ci right 8.406455e-04	k: 727	n:930000
Cons ci ratio: 5.926365e-04	ci left: 9.788949e-01	ci right 9.794763e-01	k: 910644	n:930000
KS ci ratio: 3.703827e-01	ci left: 9.818736e-05	ci right 1.437323e-04	k: 111	n:930000
KRTAP1-5   930000 perm   541 sec   (1720 perm/sec)   p_kst 1.193548e-04   p_cons 9.791871e-01   p_joint 7.817204e-04

Joint ci ratio: 1.451288e-01	ci left: 7.192436e-04	ci right 8.328052e-04	k: 728	n:940000
Cons ci ratio: 5.893505e-04	ci left: 9.789052e-01	ci right 9.794833e-01	k: 920444	n:940000
KS ci ratio: 3.703829e-01	ci left: 9.714280e-05	ci right 1.422032e-04	k: 111	n:940000
KRTAP1-5   940000 perm   551 sec   (1706 perm/sec)   p_kst 1.180851e-04   p_cons 9.791957e-01   p_joint 7.744681e-04

Joint ci ratio: 1.441434e-01	ci left: 7.218181e-04	ci right 8.349457e-04	k: 738	n:950000
Cons ci ratio: 5.862699e-04	ci left: 9.789047e-01	ci right 9.794798e-01	k: 930234	n:950000
KS ci ratio: 3.687405e-01	ci left: 9.707512e-05	ci right 1.418563e-04	k: 112	n:950000
KRTAP1-5   950000 perm   562 sec   (1691 perm/sec)   p_kst 1.178947e-04   p_cons 9.791937e-01   p_joint 7.768421e-04

Joint ci ratio: 1.434655e-01	ci left: 7.213285e-04	ci right 8.338022e-04	k: 745	n:960000
Cons ci ratio: 5.832968e-04	ci left: 9.789000e-01	ci right 9.794721e-01	k: 940020	n:960000
KS ci ratio: 3.655198e-01	ci left: 9.795507e-05	ci right 1.426533e-04	k: 114	n:960000
KRTAP1-5   960000 perm   573 sec   (1676 perm/sec)   p_kst 1.187500e-04   p_cons 9.791875e-01   p_joint 7.760417e-04

Joint ci ratio: 1.432740e-01	ci left: 7.158799e-04	ci right 8.273423e-04	k: 747	n:970000
Cons ci ratio: 5.805738e-04	ci left: 9.788808e-01	ci right 9.794503e-01	k: 949792	n:970000
KS ci ratio: 3.655200e-01	ci left: 9.694522e-05	ci right 1.411827e-04	k: 114	n:970000
KRTAP1-5   970000 perm   583 sec   (1664 perm/sec)   p_kst 1.175258e-04   p_cons 9.791670e-01   p_joint 7.701031e-04

Joint ci ratio: 1.426084e-01	ci left: 7.154624e-04	ci right 8.262982e-04	k: 754	n:980000
Cons ci ratio: 5.776426e-04	ci left: 9.788796e-01	ci right 9.794462e-01	k: 959581	n:980000
KS ci ratio: 3.608433e-01	ci left: 9.873790e-05	ci right 1.430814e-04	k: 117	n:980000
KRTAP1-5   980000 perm   594 sec   (1651 perm/sec)   p_kst 1.193878e-04   p_cons 9.791643e-01   p_joint 7.693878e-04

Joint ci ratio: 1.423262e-01	ci left: 7.111576e-04	ci right 8.210901e-04	k: 757	n:990000
Cons ci ratio: 5.747410e-04	ci left: 9.788793e-01	ci right 9.794431e-01	k: 969371	n:990000
KS ci ratio: 3.608436e-01	ci left: 9.774053e-05	ci right 1.416361e-04	k: 117	n:990000
KRTAP1-5   990000 perm   604 sec   (1639 perm/sec)   p_kst 1.181818e-04   p_cons 9.791626e-01   p_joint 7.646465e-04

Joint ci ratio: 1.414886e-01	ci left: 7.127266e-04	ci right 8.221985e-04	k: 766	n:1000000
Cons ci ratio: 5.719668e-04	ci left: 9.788731e-01	ci right 9.794341e-01	k: 979155	n:1000000
KS ci ratio: 3.563419e-01	ci left: 9.949290e-05	ci right 1.434889e-04	k: 120	n:1000000
KRTAP1-5   1000000 perm   614 sec   (1628 perm/sec)   p_kst 1.200000e-04   p_cons 9.791550e-01   p_joint 7.660000e-04

Joint ci ratio: 1.464453e-01	ci left: 6.569917e-04	ci right 7.617475e-04	k: 715	n:1010000
Cons ci ratio: 5.694669e-04	ci left: 9.788500e-01	ci right 9.794086e-01	k: 988922	n:1010000
KS ci ratio: 3.548785e-01	ci left: 9.940947e-05	ci right 1.431464e-04	k: 121	n:1010000
KRTAP1-5   1010000 perm   625 sec   (1615 perm/sec)   p_kst 1.198020e-04   p_cons 9.791307e-01   p_joint 7.079208e-04

Joint ci ratio: 1.460381e-01	ci left: 6.543286e-04	ci right 7.583444e-04	k: 719	n:1020000
Cons ci ratio: 5.664687e-04	ci left: 9.788659e-01	ci right 9.794215e-01	k: 998728	n:1020000
KS ci ratio: 3.534330e-01	ci left: 9.932804e-05	ci right 1.428103e-04	k: 122	n:1020000
KRTAP1-5   1020000 perm   636 sec   (1604 perm/sec)   p_kst 1.196078e-04   p_cons 9.791451e-01   p_joint 7.049020e-04

Joint ci ratio: 1.454335e-01	ci left: 6.535887e-04	ci right 7.570194e-04	k: 725	n:1030000
Cons ci ratio: 5.638386e-04	ci left: 9.788581e-01	ci right 9.794111e-01	k: 1008510	n:1030000
KS ci ratio: 3.520050e-01	ci left: 9.924855e-05	ci right 1.424803e-04	k: 123	n:1030000
KRTAP1-5   1030000 perm   647 sec   (1592 perm/sec)   p_kst 1.194175e-04   p_cons 9.791359e-01   p_joint 7.038835e-04

Joint ci ratio: 1.449354e-01	ci left: 6.519372e-04	ci right 7.547226e-04	k: 730	n:1040000
Cons ci ratio: 5.609939e-04	ci left: 9.788687e-01	ci right 9.794190e-01	k: 1018311	n:1040000
KS ci ratio: 3.505942e-01	ci left: 9.917093e-05	ci right 1.421564e-04	k: 124	n:1040000
KRTAP1-5   1040000 perm   658 sec   (1581 perm/sec)   p_kst 1.192308e-04   p_cons 9.791452e-01   p_joint 7.019231e-04

Joint ci ratio: 1.466524e-01	ci left: 6.301279e-04	ci right 7.307548e-04	k: 713	n:1050000
Cons ci ratio: 5.582047e-04	ci left: 9.788783e-01	ci right 9.794258e-01	k: 1028111	n:1050000
KS ci ratio: 3.464610e-01	ci left: 1.008335e-04	ci right 1.439087e-04	k: 127	n:1050000
KRTAP1-5   1050000 perm   670 sec   (1568 perm/sec)   p_kst 1.209524e-04   p_cons 9.791533e-01   p_joint 6.790476e-04

Joint ci ratio: 1.469621e-01	ci left: 6.214569e-04	ci right 7.209271e-04	k: 710	n:1060000
Cons ci ratio: 5.551098e-04	ci left: 9.789132e-01	ci right 9.794577e-01	k: 1037938	n:1060000
KS ci ratio: 3.464612e-01	ci left: 9.988225e-05	ci right 1.425511e-04	k: 127	n:1060000
KRTAP1-5   1060000 perm   681 sec   (1557 perm/sec)   p_kst 1.198113e-04   p_cons 9.791868e-01   p_joint 6.698113e-04

Joint ci ratio: 1.462439e-01	ci left: 6.219510e-04	ci right 7.209713e-04	k: 717	n:1070000
Cons ci ratio: 5.524826e-04	ci left: 9.789165e-01	ci right 9.794584e-01	k: 1047732	n:1070000
KS ci ratio: 3.437857e-01	ci left: 1.006559e-04	ci right 1.432494e-04	k: 129	n:1070000
KRTAP1-5   1070000 perm   692 sec   (1547 perm/sec)   p_kst 1.205607e-04   p_cons 9.791888e-01   p_joint 6.700935e-04

Joint ci ratio: 1.459396e-01	ci left: 6.188683e-04	ci right 7.171750e-04	k: 720	n:1080000
Cons ci ratio: 5.500048e-04	ci left: 9.789114e-01	ci right 9.794509e-01	k: 1057517	n:1080000
KS ci ratio: 3.424711e-01	ci left: 1.005701e-04	ci right 1.429284e-04	k: 130	n:1080000
KRTAP1-5   1080000 perm   703 sec   (1537 perm/sec)   p_kst 1.203704e-04   p_cons 9.791824e-01   p_joint 6.666667e-04

Joint ci ratio: 1.447397e-01	ci left: 6.237996e-04	ci right 7.220045e-04	k: 732	n:1090000
Cons ci ratio: 5.476585e-04	ci left: 9.788990e-01	ci right 9.794361e-01	k: 1067294	n:1090000
KS ci ratio: 3.361161e-01	ci left: 1.038438e-04	ci right 1.465936e-04	k: 135	n:1090000
KRTAP1-5   1090000 perm   714 sec   (1527 perm/sec)   p_kst 1.238532e-04   p_cons 9.791688e-01   p_joint 6.715596e-04

Joint ci ratio: 1.452367e-01	ci left: 6.137479e-04	ci right 7.107308e-04	k: 727	n:1100000
Cons ci ratio: 5.450867e-04	ci left: 9.789060e-01	ci right 9.794406e-01	k: 1077092	n:1100000
KS ci ratio: 3.361163e-01	ci left: 1.028998e-04	ci right 1.452609e-04	k: 135	n:1100000
KRTAP1-5   1100000 perm   725 sec   (1517 perm/sec)   p_kst 1.227273e-04   p_cons 9.791745e-01   p_joint 6.609091e-04

Joint ci ratio: 1.446419e-01	ci left: 6.134280e-04	ci right 7.099292e-04	k: 733	n:1110000
Cons ci ratio: 5.425148e-04	ci left: 9.789156e-01	ci right 9.794477e-01	k: 1086893	n:1110000
KS ci ratio: 3.336717e-01	ci left: 1.036231e-04	ci right 1.459050e-04	k: 137	n:1110000
KRTAP1-5   1110000 perm   737 sec   (1506 perm/sec)   p_kst 1.234234e-04   p_cons 9.791829e-01   p_joint 6.603604e-04

Joint ci ratio: 1.442496e-01	ci left: 6.113933e-04	ci right 7.072910e-04	k: 737	n:1120000
Cons ci ratio: 5.401444e-04	ci left: 9.789124e-01	ci right 9.794422e-01	k: 1096680	n:1120000
KS ci ratio: 3.324693e-01	ci left: 1.035161e-04	ci right 1.455696e-04	k: 138	n:1120000
KRTAP1-5   1120000 perm   749 sec   (1496 perm/sec)   p_kst 1.232143e-04   p_cons 9.791786e-01   p_joint 6.580357e-04

Joint ci ratio: 1.456389e-01	ci left: 5.940422e-04	ci right 6.881939e-04	k: 723	n:1130000
Cons ci ratio: 5.375597e-04	ci left: 9.789281e-01	ci right 9.794553e-01	k: 1106488	n:1130000
KS ci ratio: 3.312798e-01	ci left: 1.034112e-04	ci right 1.452398e-04	k: 139	n:1130000
KRTAP1-5   1130000 perm   760 sec   (1486 perm/sec)   p_kst 1.230088e-04   p_cons 9.791929e-01   p_joint 6.398230e-04

Joint ci ratio: 1.452384e-01	ci left: 5.922124e-04	ci right 6.857935e-04	k: 727	n:1140000
Cons ci ratio: 5.352305e-04	ci left: 9.789267e-01	ci right 9.794516e-01	k: 1116277	n:1140000
KS ci ratio: 3.301030e-01	ci left: 1.033085e-04	ci right 1.449155e-04	k: 140	n:1140000
KRTAP1-5   1140000 perm   772 sec   (1476 perm/sec)   p_kst 1.228070e-04   p_cons 9.791904e-01   p_joint 6.377193e-04

Joint ci ratio: 1.442508e-01	ci left: 5.954435e-04	ci right 6.888404e-04	k: 737	n:1150000
Cons ci ratio: 5.327607e-04	ci left: 9.789384e-01	ci right 9.794609e-01	k: 1126081	n:1150000
KS ci ratio: 3.289386e-01	ci left: 1.032078e-04	ci right 1.445966e-04	k: 141	n:1150000
KRTAP1-5   1150000 perm   784 sec   (1466 perm/sec)   p_kst 1.226087e-04   p_cons 9.792009e-01   p_joint 6.408696e-04

Joint ci ratio: 1.436680e-01	ci left: 5.952965e-04	ci right 6.882607e-04	k: 743	n:1160000
Cons ci ratio: 5.303583e-04	ci left: 9.789473e-01	ci right 9.794675e-01	k: 1135882	n:1160000
KS ci ratio: 3.289388e-01	ci left: 1.023180e-04	ci right 1.433501e-04	k: 141	n:1160000
KRTAP1-5   1160000 perm   797 sec   (1456 perm/sec)   p_kst 1.215517e-04   p_cons 9.792086e-01   p_joint 6.405172e-04

Joint ci ratio: 1.434756e-01	ci left: 5.918564e-04	ci right 6.841490e-04	k: 745	n:1170000
Cons ci ratio: 5.282762e-04	ci left: 9.789338e-01	ci right 9.794519e-01	k: 1145657	n:1170000
KS ci ratio: 3.289390e-01	ci left: 1.014435e-04	ci right 1.421249e-04	k: 141	n:1170000
KRTAP1-5   1170000 perm   809 sec   (1446 perm/sec)   p_kst 1.205128e-04   p_cons 9.791940e-01   p_joint 6.367521e-04

Joint ci ratio: 1.428071e-01	ci left: 5.925605e-04	ci right 6.844956e-04	k: 752	n:1180000
Cons ci ratio: 5.259010e-04	ci left: 9.789452e-01	ci right 9.794610e-01	k: 1155461	n:1180000
KS ci ratio: 3.255181e-01	ci left: 1.029174e-04	ci right 1.436709e-04	k: 144	n:1180000
KRTAP1-5   1180000 perm   823 sec   (1434 perm/sec)   p_kst 1.220339e-04   p_cons 9.792042e-01   p_joint 6.372881e-04

Joint ci ratio: 1.421479e-01	ci left: 5.932536e-04	ci right 6.848354e-04	k: 759	n:1190000
Cons ci ratio: 5.237518e-04	ci left: 9.789412e-01	ci right 9.794548e-01	k: 1165247	n:1190000
KS ci ratio: 3.255183e-01	ci left: 1.020525e-04	ci right 1.424636e-04	k: 144	n:1190000
KRTAP1-5   1190000 perm   839 sec   (1419 perm/sec)   p_kst 1.210084e-04   p_cons 9.791992e-01   p_joint 6.378151e-04

Joint ci ratio: 1.419615e-01	ci left: 5.899172e-04	ci right 6.808544e-04	k: 761	n:1200000
Cons ci ratio: 5.217141e-04	ci left: 9.789305e-01	ci right 9.794422e-01	k: 1175025	n:1200000
KS ci ratio: 3.244016e-01	ci left: 1.019675e-04	ci right 1.421775e-04	k: 145	n:1200000
KRTAP1-5   1200000 perm   852 sec   (1408 perm/sec)   p_kst 1.208333e-04   p_cons 9.791875e-01   p_joint 6.341667e-04

Joint ci ratio: 1.421486e-01	ci left: 5.834476e-04	ci right 6.735161e-04	k: 759	n:1210000
Cons ci ratio: 5.194998e-04	ci left: 9.789358e-01	ci right 9.794453e-01	k: 1184822	n:1210000
KS ci ratio: 3.244018e-01	ci left: 1.011247e-04	ci right 1.410025e-04	k: 145	n:1210000
KRTAP1-5   1210000 perm   865 sec   (1399 perm/sec)   p_kst 1.198347e-04   p_cons 9.791917e-01   p_joint 6.272727e-04

Joint ci ratio: 1.125896e-01	ci left: 9.367259e-04	ci right 1.049271e-03	k: 1210	n:1220000
Cons ci ratio: 5.173029e-04	ci left: 9.789419e-01	ci right 9.794493e-01	k: 1194620	n:1220000
KS ci ratio: 3.200469e-01	ci left: 1.033094e-04	ci right 1.433897e-04	k: 149	n:1220000
KRTAP1-5   1220000 perm   877 sec   (1391 perm/sec)   p_kst 1.221311e-04   p_cons 9.791967e-01   p_joint 9.918033e-04

Joint ci ratio: 1.121276e-01	ci left: 9.370119e-04	ci right 1.049099e-03	k: 1220	n:1230000
Cons ci ratio: 5.151336e-04	ci left: 9.789479e-01	ci right 9.794531e-01	k: 1204418	n:1230000
KS ci ratio: 3.200470e-01	ci left: 1.024695e-04	ci right 1.422239e-04	k: 149	n:1230000
KRTAP1-5   1230000 perm   890 sec   (1382 perm/sec)   p_kst 1.211382e-04   p_cons 9.792016e-01   p_joint 9.918699e-04

Joint ci ratio: 1.116258e-01	ci left: 9.380781e-04	ci right 1.049758e-03	k: 1231	n:1240000
Cons ci ratio: 5.129711e-04	ci left: 9.789554e-01	ci right 9.794585e-01	k: 1214218	n:1240000
KS ci ratio: 3.189855e-01	ci left: 1.023849e-04	ci right 1.419478e-04	k: 150	n:1240000
KRTAP1-5   1240000 perm   903 sec   (1373 perm/sec)   p_kst 1.209677e-04   p_cons 9.792081e-01   p_joint 9.927419e-04

Joint ci ratio: 1.110860e-01	ci left: 9.399061e-04	ci right 1.051227e-03	k: 1243	n:1250000
Cons ci ratio: 5.111065e-04	ci left: 9.789411e-01	ci right 9.794423e-01	k: 1223991	n:1250000
KS ci ratio: 3.179345e-01	ci left: 1.023019e-04	ci right 1.416760e-04	k: 151	n:1250000
KRTAP1-5   1250000 perm   917 sec   (1364 perm/sec)   p_kst 1.208000e-04   p_cons 9.791928e-01   p_joint 9.944000e-04

Joint ci ratio: 1.149430e-01	ci left: 8.692044e-04	ci right 9.759682e-04	k: 1161	n:1260000
Cons ci ratio: 5.090438e-04	ci left: 9.789445e-01	ci right 9.794438e-01	k: 1233786	n:1260000
KS ci ratio: 3.179347e-01	ci left: 1.014900e-04	ci right 1.405516e-04	k: 151	n:1260000
KRTAP1-5   1260000 perm   930 sec   (1354 perm/sec)   p_kst 1.198413e-04   p_cons 9.791952e-01   p_joint 9.214286e-04

Joint ci ratio: 1.155421e-01	ci left: 8.531834e-04	ci right 9.585629e-04	k: 1149	n:1270000
Cons ci ratio: 5.068587e-04	ci left: 9.789598e-01	ci right 9.794569e-01	k: 1243596	n:1270000
KS ci ratio: 3.158633e-01	ci left: 1.021404e-04	ci right 1.411445e-04	k: 153	n:1270000
KRTAP1-5   1270000 perm   943 sec   (1347 perm/sec)   p_kst 1.204724e-04   p_cons 9.792094e-01   p_joint 9.047244e-04

Joint ci ratio: 1.150430e-01	ci left: 8.541052e-04	ci right 9.591118e-04	k: 1159	n:1280000
Cons ci ratio: 5.047886e-04	ci left: 9.789678e-01	ci right 9.794629e-01	k: 1253397	n:1280000
KS ci ratio: 3.148428e-01	ci left: 1.020619e-04	ci right 1.408847e-04	k: 154	n:1280000
KRTAP1-5   1280000 perm   956 sec   (1339 perm/sec)   p_kst 1.203125e-04   p_cons 9.792164e-01   p_joint 9.054688e-04

Joint ci ratio: 1.143547e-01	ci left: 8.580257e-04	ci right 9.628406e-04	k: 1173	n:1290000
Cons ci ratio: 5.028298e-04	ci left: 9.789686e-01	ci right 9.794618e-01	k: 1263189	n:1290000
KS ci ratio: 3.148429e-01	ci left: 1.012707e-04	ci right 1.397926e-04	k: 154	n:1290000
KRTAP1-5   1290000 perm   969 sec   (1331 perm/sec)   p_kst 1.193798e-04   p_cons 9.792163e-01   p_joint 9.093023e-04

Joint ci ratio: 1.137266e-01	ci left: 8.611403e-04	ci right 9.657192e-04	k: 1186	n:1300000
Cons ci ratio: 5.008651e-04	ci left: 9.789718e-01	ci right 9.794630e-01	k: 1272984	n:1300000
KS ci ratio: 3.128310e-01	ci left: 1.019090e-04	ci right 1.403765e-04	k: 156	n:1300000
KRTAP1-5   1300000 perm   984 sec   (1321 perm/sec)   p_kst 1.200000e-04   p_cons 9.792185e-01   p_joint 9.123077e-04

Joint ci ratio: 1.133454e-01	ci left: 8.605001e-04	ci right 9.646275e-04	k: 1194	n:1310000
Cons ci ratio: 4.989889e-04	ci left: 9.789695e-01	ci right 9.794589e-01	k: 1282772	n:1310000
KS ci ratio: 3.118395e-01	ci left: 1.018346e-04	ci right 1.401279e-04	k: 157	n:1310000
KRTAP1-5   1310000 perm   997 sec   (1313 perm/sec)   p_kst 1.198473e-04   p_cons 9.792153e-01   p_joint 9.114504e-04

Joint ci ratio: 1.151439e-01	ci left: 8.267510e-04	ci right 9.284898e-04	k: 1157	n:1320000
Cons ci ratio: 4.970133e-04	ci left: 9.789772e-01	ci right 9.794646e-01	k: 1292573	n:1320000
KS ci ratio: 3.108574e-01	ci left: 1.017615e-04	ci right 1.398829e-04	k: 158	n:1320000
KRTAP1-5   1320000 perm   1011 sec   (1305 perm/sec)   p_kst 1.196970e-04   p_cons 9.792220e-01   p_joint 8.765152e-04

Joint ci ratio: 1.162037e-01	ci left: 8.052017e-04	ci right 9.052632e-04	k: 1136	n:1330000
Cons ci ratio: 4.952072e-04	ci left: 9.789727e-01	ci right 9.794583e-01	k: 1302358	n:1330000
KS ci ratio: 3.108575e-01	ci left: 1.009964e-04	ci right 1.388312e-04	k: 158	n:1330000
KRTAP1-5   1330000 perm   1025 sec   (1298 perm/sec)   p_kst 1.187970e-04   p_cons 9.792165e-01   p_joint 8.541353e-04

Joint ci ratio: 1.163578e-01	ci left: 7.970188e-04	ci right 8.962038e-04	k: 1133	n:1340000
Cons ci ratio: 4.933846e-04	ci left: 9.789712e-01	ci right 9.794551e-01	k: 1312147	n:1340000
KS ci ratio: 3.108577e-01	ci left: 1.002427e-04	ci right 1.377951e-04	k: 158	n:1340000
KRTAP1-5   1340000 perm   1038 sec   (1291 perm/sec)   p_kst 1.179104e-04   p_cons 9.792142e-01   p_joint 8.455224e-04

Joint ci ratio: 1.033898e-01	ci left: 1.008698e-03	ci right 1.119387e-03	k: 1435	n:1350000
Cons ci ratio: 4.913851e-04	ci left: 9.789862e-01	ci right 9.794681e-01	k: 1321958	n:1350000
KS ci ratio: 3.098847e-01	ci left: 1.001832e-04	ci right 1.375727e-04	k: 159	n:1350000
KRTAP1-5   1350000 perm   1052 sec   (1283 perm/sec)   p_kst 1.177778e-04   p_cons 9.792281e-01   p_joint 1.062963e-03

Joint ci ratio: 1.030317e-01	ci left: 1.008444e-03	ci right 1.118699e-03	k: 1445	n:1360000
Cons ci ratio: 4.897280e-04	ci left: 9.789743e-01	ci right 9.794546e-01	k: 1331733	n:1360000
KS ci ratio: 3.098849e-01	ci left: 9.944652e-05	ci right 1.365611e-04	k: 159	n:1360000
KRTAP1-5   1360000 perm   1066 sec   (1276 perm/sec)   p_kst 1.169118e-04   p_cons 9.792154e-01   p_joint 1.062500e-03

Joint ci ratio: 1.026420e-01	ci left: 1.008906e-03	ci right 1.118768e-03	k: 1456	n:1370000
Cons ci ratio: 4.880612e-04	ci left: 9.789648e-01	ci right 9.794434e-01	k: 1341511	n:1370000
KS ci ratio: 3.089210e-01	ci left: 9.939390e-05	ci right 1.363507e-04	k: 160	n:1370000
KRTAP1-5   1370000 perm   1079 sec   (1269 perm/sec)   p_kst 1.167883e-04   p_cons 9.792051e-01   p_joint 1.062774e-03

Joint ci ratio: 1.020481e-01	ci left: 1.013599e-03	ci right 1.123295e-03	k: 1473	n:1380000
Cons ci ratio: 4.860736e-04	ci left: 9.789838e-01	ci right 9.794605e-01	k: 1351328	n:1380000
KS ci ratio: 3.042326e-01	ci left: 1.020182e-04	ci right 1.392637e-04	k: 165	n:1380000
KRTAP1-5   1380000 perm   1093 sec   (1262 perm/sec)   p_kst 1.195652e-04   p_cons 9.792232e-01   p_joint 1.067391e-03

Joint ci ratio: 1.019102e-01	ci left: 1.009111e-03	ci right 1.118165e-03	k: 1477	n:1390000
Cons ci ratio: 4.843668e-04	ci left: 9.789809e-01	ci right 9.794559e-01	k: 1361115	n:1390000
KS ci ratio: 3.024162e-01	ci left: 1.026136e-04	ci right 1.398098e-04	k: 167	n:1390000
KRTAP1-5   1390000 perm   1107 sec   (1256 perm/sec)   p_kst 1.201439e-04   p_cons 9.792194e-01   p_joint 1.062590e-03

Joint ci ratio: 1.015672e-01	ci left: 1.008864e-03	ci right 1.117503e-03	k: 1487	n:1400000
Cons ci ratio: 4.826608e-04	ci left: 9.789795e-01	ci right 9.794528e-01	k: 1370904	n:1400000
KS ci ratio: 3.024163e-01	ci left: 1.018806e-04	ci right 1.388112e-04	k: 167	n:1400000
KRTAP1-5   1400000 perm   1121 sec   (1249 perm/sec)   p_kst 1.192857e-04   p_cons 9.792171e-01   p_joint 1.062143e-03

Joint ci ratio: 1.012615e-01	ci left: 1.007930e-03	ci right 1.116122e-03	k: 1496	n:1410000
Cons ci ratio: 4.810984e-04	ci left: 9.789674e-01	ci right 9.794392e-01	k: 1380678	n:1410000
KS ci ratio: 3.006320e-01	ci left: 1.024692e-04	ci right 1.393521e-04	k: 169	n:1410000
KRTAP1-5   1410000 perm   1135 sec   (1243 perm/sec)   p_kst 1.198582e-04   p_cons 9.792043e-01   p_joint 1.060993e-03

Joint ci ratio: 1.009921e-01	ci left: 1.006323e-03	ci right 1.114039e-03	k: 1504	n:1420000
Cons ci ratio: 4.793934e-04	ci left: 9.789689e-01	ci right 9.794390e-01	k: 1390471	n:1420000
KS ci ratio: 3.006322e-01	ci left: 1.017476e-04	ci right 1.383708e-04	k: 169	n:1420000
KRTAP1-5   1420000 perm   1149 sec   (1236 perm/sec)   p_kst 1.190141e-04   p_cons 9.792049e-01   p_joint 1.059155e-03

Joint ci ratio: 1.020501e-01	ci left: 9.781571e-04	ci right 1.084020e-03	k: 1473	n:1430000
Cons ci ratio: 4.776736e-04	ci left: 9.789732e-01	ci right 9.794416e-01	k: 1400268	n:1430000
KS ci ratio: 2.997519e-01	ci left: 1.016827e-04	ci right 1.381549e-04	k: 170	n:1430000
KRTAP1-5   1430000 perm   1163 sec   (1230 perm/sec)   p_kst 1.188811e-04   p_cons 9.792084e-01   p_joint 1.030070e-03

Joint ci ratio: 1.019466e-01	ci left: 9.733944e-04	ci right 1.078629e-03	k: 1476	n:1440000
Cons ci ratio: 4.761507e-04	ci left: 9.789621e-01	ci right 9.794290e-01	k: 1410043	n:1440000
KS ci ratio: 2.988792e-01	ci left: 1.016189e-04	ci right 1.379420e-04	k: 171	n:1440000
KRTAP1-5   1440000 perm   1177 sec   (1223 perm/sec)   p_kst 1.187500e-04   p_cons 9.791965e-01   p_joint 1.025000e-03

Joint ci ratio: 1.018435e-01	ci left: 9.686975e-04	ci right 1.073312e-03	k: 1479	n:1450000
Cons ci ratio: 4.745297e-04	ci left: 9.789609e-01	ci right 9.794262e-01	k: 1419832	n:1450000
KS ci ratio: 2.988794e-01	ci left: 1.009181e-04	ci right 1.369907e-04	k: 171	n:1450000
KRTAP1-5   1450000 perm   1192 sec   (1217 perm/sec)   p_kst 1.179310e-04   p_cons 9.791945e-01   p_joint 1.020000e-03

Joint ci ratio: 1.015012e-01	ci left: 9.687377e-04	ci right 1.072984e-03	k: 1489	n:1460000
Cons ci ratio: 4.731239e-04	ci left: 9.789424e-01	ci right 9.794064e-01	k: 1429596	n:1460000
KS ci ratio: 2.971566e-01	ci left: 1.014943e-04	ci right 1.375243e-04	k: 173	n:1460000
KRTAP1-5   1460000 perm   1206 sec   (1211 perm/sec)   p_kst 1.184932e-04   p_cons 9.791753e-01   p_joint 1.019863e-03

Joint ci ratio: 1.012637e-01	ci left: 9.667888e-04	ci right 1.070567e-03	k: 1496	n:1470000
Cons ci ratio: 4.715885e-04	ci left: 9.789365e-01	ci right 9.793990e-01	k: 1439378	n:1470000
KS ci ratio: 2.971567e-01	ci left: 1.008039e-04	ci right 1.365888e-04	k: 173	n:1470000
KRTAP1-5   1470000 perm   1220 sec   (1205 perm/sec)   p_kst 1.176871e-04   p_cons 9.791687e-01   p_joint 1.017687e-03

Joint ci ratio: 1.022604e-01	ci left: 9.411598e-04	ci right 1.043242e-03	k: 1467	n:1480000
Cons ci ratio: 4.699824e-04	ci left: 9.789382e-01	ci right 9.793991e-01	k: 1449171	n:1480000
KS ci ratio: 2.963065e-01	ci left: 1.007482e-04	ci right 1.363917e-04	k: 174	n:1480000
KRTAP1-5   1480000 perm   1235 sec   (1198 perm/sec)   p_kst 1.175676e-04   p_cons 9.791696e-01   p_joint 9.912162e-04

Joint ci ratio: 1.017417e-01	ci left: 9.446537e-04	ci right 1.046564e-03	k: 1482	n:1490000
Cons ci ratio: 4.684233e-04	ci left: 9.789372e-01	ci right 9.793965e-01	k: 1458960	n:1490000
KS ci ratio: 2.946276e-01	ci left: 1.013148e-04	ci right 1.369178e-04	k: 176	n:1490000
KRTAP1-5   1490000 perm   1250 sec   (1192 perm/sec)   p_kst 1.181208e-04   p_cons 9.791678e-01   p_joint 9.946309e-04

Joint ci ratio: 1.024008e-01	ci left: 9.260123e-04	ci right 1.026597e-03	k: 1463	n:1500000
Cons ci ratio: 4.667118e-04	ci left: 9.789509e-01	ci right 9.794086e-01	k: 1468771	n:1500000
KS ci ratio: 2.929770e-01	ci left: 1.018745e-04	ci right 1.374364e-04	k: 178	n:1500000
KRTAP1-5   1500000 perm   1265 sec   (1186 perm/sec)   p_kst 1.186667e-04   p_cons 9.791807e-01   p_joint 9.753333e-04

Joint ci ratio: 1.024712e-01	ci left: 9.185890e-04	ci right 1.018440e-03	k: 1461	n:1510000
Cons ci ratio: 4.652303e-04	ci left: 9.789458e-01	ci right 9.794020e-01	k: 1478554	n:1510000
KS ci ratio: 2.929771e-01	ci left: 1.011998e-04	ci right 1.365262e-04	k: 178	n:1510000
KRTAP1-5   1510000 perm   1280 sec   (1180 perm/sec)   p_kst 1.178808e-04   p_cons 9.791748e-01   p_joint 9.675497e-04

Joint ci ratio: 1.025418e-01	ci left: 9.112634e-04	ci right 1.010391e-03	k: 1459	n:1520000
Cons ci ratio: 4.637180e-04	ci left: 9.789448e-01	ci right 9.793995e-01	k: 1488343	n:1520000
KS ci ratio: 2.921622e-01	ci left: 1.011436e-04	ci right 1.363340e-04	k: 179	n:1520000
KRTAP1-5   1520000 perm   1295 sec   (1174 perm/sec)   p_kst 1.177632e-04   p_cons 9.791730e-01   p_joint 9.598684e-04

Joint ci ratio: 1.024018e-01	ci left: 9.078547e-04	ci right 1.006468e-03	k: 1463	n:1530000
Cons ci ratio: 4.622869e-04	ci left: 9.789378e-01	ci right 9.793911e-01	k: 1498123	n:1530000
KS ci ratio: 2.921623e-01	ci left: 1.004825e-04	ci right 1.354430e-04	k: 179	n:1530000
KRTAP1-5   1530000 perm   1309 sec   (1168 perm/sec)   p_kst 1.169935e-04   p_cons 9.791654e-01   p_joint 9.562092e-04

Joint ci ratio: 1.021579e-01	ci left: 9.063887e-04	ci right 1.004595e-03	k: 1470	n:1540000
Cons ci ratio: 4.607589e-04	ci left: 9.789407e-01	ci right 9.793925e-01	k: 1507918	n:1540000
KS ci ratio: 2.921624e-01	ci left: 9.983006e-05	ci right 1.345635e-04	k: 179	n:1540000
KRTAP1-5   1540000 perm   1324 sec   (1163 perm/sec)   p_kst 1.162338e-04   p_cons 9.791675e-01   p_joint 9.545455e-04

Joint ci ratio: 1.016408e-01	ci left: 9.099719e-04	ci right 1.008037e-03	k: 1485	n:1550000
Cons ci ratio: 4.594058e-04	ci left: 9.789294e-01	ci right 9.793798e-01	k: 1517691	n:1550000
KS ci ratio: 2.905526e-01	ci left: 1.003820e-04	ci right 1.350797e-04	k: 181	n:1550000
KRTAP1-5   1550000 perm   1340 sec   (1157 perm/sec)   p_kst 1.167742e-04   p_cons 9.791555e-01   p_joint 9.580645e-04

Joint ci ratio: 1.011990e-01	ci left: 9.122608e-04	ci right 1.010120e-03	k: 1498	n:1560000
Cons ci ratio: 4.579349e-04	ci left: 9.789297e-01	ci right 9.793787e-01	k: 1527482	n:1560000
KS ci ratio: 2.889691e-01	ci left: 1.009274e-04	ci right 1.355887e-04	k: 183	n:1560000
KRTAP1-5   1560000 perm   1355 sec   (1151 perm/sec)   p_kst 1.173077e-04   p_cons 9.791551e-01   p_joint 9.602564e-04

Joint ci ratio: 1.009637e-01	ci left: 9.107960e-04	ci right 1.008257e-03	k: 1505	n:1570000
Cons ci ratio: 4.564068e-04	ci left: 9.789365e-01	ci right 9.793840e-01	k: 1537283	n:1570000
KS ci ratio: 2.889692e-01	ci left: 1.002846e-04	ci right 1.347251e-04	k: 183	n:1570000
KRTAP1-5   1570000 perm   1370 sec   (1146 perm/sec)   p_kst 1.165605e-04   p_cons 9.791611e-01   p_joint 9.585987e-04

Joint ci ratio: 1.006966e-01	ci left: 9.099671e-04	ci right 1.007067e-03	k: 1513	n:1580000
Cons ci ratio: 4.548587e-04	ci left: 9.789464e-01	ci right 9.793924e-01	k: 1547089	n:1580000
KS ci ratio: 2.881872e-01	ci left: 1.002370e-04	ci right 1.345510e-04	k: 184	n:1580000
KRTAP1-5   1580000 perm   1386 sec   (1140 perm/sec)   p_kst 1.164557e-04   p_cons 9.791703e-01   p_joint 9.575949e-04

Joint ci ratio: 1.004978e-01	ci left: 9.079226e-04	ci right 1.004602e-03	k: 1519	n:1590000
Cons ci ratio: 4.533820e-04	ci left: 9.789511e-01	ci right 9.793956e-01	k: 1556887	n:1590000
KS ci ratio: 2.874114e-01	ci left: 1.001901e-04	ci right 1.343790e-04	k: 185	n:1590000
KRTAP1-5   1590000 perm   1401 sec   (1135 perm/sec)   p_kst 1.163522e-04   p_cons 9.791742e-01   p_joint 9.553459e-04

Joint ci ratio: 1.001688e-01	ci left: 9.083413e-04	ci right 1.004730e-03	k: 1529	n:1600000
Cons ci ratio: 4.519195e-04	ci left: 9.789557e-01	ci right 9.793988e-01	k: 1566685	n:1600000
KS ci ratio: 2.874115e-01	ci left: 9.956391e-05	ci right 1.335391e-04	k: 185	n:1600000
KRTAP1-5   1600000 perm   1417 sec   (1129 perm/sec)   p_kst 1.156250e-04   p_cons 9.791781e-01   p_joint 9.556250e-04

Joint ci ratio: 9.981060e-02	ci left: 9.093609e-04	ci right 1.005492e-03	k: 1540	n:1610000
Cons ci ratio: 4.504712e-04	ci left: 9.789603e-01	ci right 9.794020e-01	k: 1576483	n:1610000
KS ci ratio: 2.866421e-01	ci left: 9.952191e-05	ci right 1.333754e-04	k: 186	n:1610000
KRTAP1-5   1610000 perm   1433 sec   (1124 perm/sec)   p_kst 1.155280e-04   p_cons 9.791820e-01   p_joint 9.565217e-04

Joint ci ratio: 1.029337e-01	ci left: 8.483955e-04	ci right 9.410580e-04	k: 1448	n:1620000
Cons ci ratio: 4.490774e-04	ci left: 9.789611e-01	ci right 9.794014e-01	k: 1586275	n:1620000
KS ci ratio: 2.866422e-01	ci left: 9.890757e-05	ci right 1.325521e-04	k: 186	n:1620000
KRTAP1-5   1620000 perm   1448 sec   (1119 perm/sec)   p_kst 1.148148e-04   p_cons 9.791821e-01   p_joint 8.938272e-04

Joint ci ratio: 1.034714e-01	ci left: 8.342254e-04	ci right 9.258451e-04	k: 1433	n:1630000
Cons ci ratio: 4.477437e-04	ci left: 9.789576e-01	ci right 9.793966e-01	k: 1596060	n:1630000
KS ci ratio: 2.866423e-01	ci left: 9.830077e-05	ci right 1.317389e-04	k: 186	n:1630000
KRTAP1-5   1630000 perm   1464 sec   (1113 perm/sec)   p_kst 1.141104e-04   p_cons 9.791779e-01   p_joint 8.791411e-04

Joint ci ratio: 1.033275e-01	ci left: 8.315145e-04	ci right 9.227019e-04	k: 1437	n:1640000
Cons ci ratio: 4.463349e-04	ci left: 9.789620e-01	ci right 9.793997e-01	k: 1605858	n:1640000
KS ci ratio: 2.858789e-01	ci left: 9.826736e-05	ci right 1.315890e-04	k: 187	n:1640000
KRTAP1-5   1640000 perm   1480 sec   (1108 perm/sec)   p_kst 1.140244e-04   p_cons 9.791817e-01   p_joint 8.762195e-04

Joint ci ratio: 1.030770e-01	ci left: 8.306080e-04	ci right 9.214617e-04	k: 1444	n:1650000
Cons ci ratio: 4.449791e-04	ci left: 9.789628e-01	ci right 9.793991e-01	k: 1615650	n:1650000
KS ci ratio: 2.858790e-01	ci left: 9.767179e-05	ci right 1.307915e-04	k: 187	n:1650000
KRTAP1-5   1650000 perm   1496 sec   (1103 perm/sec)   p_kst 1.133333e-04   p_cons 9.791818e-01   p_joint 8.751515e-04

Joint ci ratio: 1.027929e-01	ci left: 8.302995e-04	ci right 9.208540e-04	k: 1452	n:1660000
Cons ci ratio: 4.436814e-04	ci left: 9.789594e-01	ci right 9.793944e-01	k: 1625435	n:1660000
KS ci ratio: 2.851217e-01	ci left: 9.764269e-05	ci right 1.306491e-04	k: 188	n:1660000
KRTAP1-5   1660000 perm   1512 sec   (1098 perm/sec)   p_kst 1.132530e-04   p_cons 9.791777e-01   p_joint 8.746988e-04

Joint ci ratio: 1.028995e-01	ci left: 8.235773e-04	ci right 9.134975e-04	k: 1449	n:1670000
Cons ci ratio: 4.423041e-04	ci left: 9.789644e-01	ci right 9.793980e-01	k: 1635234	n:1670000
KS ci ratio: 2.836249e-01	ci left: 9.817021e-05	ci right 1.311495e-04	k: 190	n:1670000
KRTAP1-5   1670000 perm   1528 sec   (1093 perm/sec)   p_kst 1.137725e-04   p_cons 9.791820e-01   p_joint 8.676647e-04

Joint ci ratio: 1.026874e-01	ci left: 8.221546e-04	ci right 9.117233e-04	k: 1455	n:1680000
Cons ci ratio: 4.410039e-04	ci left: 9.789633e-01	ci right 9.793957e-01	k: 1645023	n:1680000
KS ci ratio: 2.836250e-01	ci left: 9.758586e-05	ci right 1.303689e-04	k: 190	n:1680000
KRTAP1-5   1680000 perm   1545 sec   (1087 perm/sec)   p_kst 1.130952e-04   p_cons 9.791804e-01   p_joint 8.660714e-04

Joint ci ratio: 1.024064e-01	ci left: 8.219021e-04	ci right 9.111835e-04	k: 1463	n:1690000
Cons ci ratio: 4.398426e-04	ci left: 9.789504e-01	ci right 9.793817e-01	k: 1654792	n:1690000
KS ci ratio: 2.828855e-01	ci left: 9.755811e-05	ci right 1.302311e-04	k: 191	n:1690000
KRTAP1-5   1690000 perm   1561 sec   (1082 perm/sec)   p_kst 1.130178e-04   p_cons 9.791669e-01   p_joint 8.656805e-04

Joint ci ratio: 1.032573e-01	ci left: 8.033124e-04	ci right 8.913435e-04	k: 1439	n:1700000
Cons ci ratio: 4.386524e-04	ci left: 9.789412e-01	ci right 9.793713e-01	k: 1664567	n:1700000
KS ci ratio: 2.828856e-01	ci left: 9.698424e-05	ci right 1.294650e-04	k: 191	n:1700000
KRTAP1-5   1700000 perm   1577 sec   (1078 perm/sec)   p_kst 1.123529e-04   p_cons 9.791571e-01   p_joint 8.464706e-04

Joint ci ratio: 1.032217e-01	ci left: 7.991843e-04	ci right 8.867310e-04	k: 1440	n:1710000
Cons ci ratio: 4.374028e-04	ci left: 9.789386e-01	ci right 9.793674e-01	k: 1674353	n:1710000
KS ci ratio: 2.828857e-01	ci left: 9.641707e-05	ci right 1.287079e-04	k: 191	n:1710000
KRTAP1-5   1710000 perm   1594 sec   (1073 perm/sec)   p_kst 1.116959e-04   p_cons 9.791538e-01   p_joint 8.421053e-04

Joint ci ratio: 1.028653e-01	ci left: 8.002020e-04	ci right 8.875393e-04	k: 1450	n:1720000
Cons ci ratio: 4.362259e-04	ci left: 9.789301e-01	ci right 9.793578e-01	k: 1684129	n:1720000
KS ci ratio: 2.821519e-01	ci left: 9.639672e-05	ci right 1.285821e-04	k: 192	n:1720000
KRTAP1-5   1720000 perm   1611 sec   (1068 perm/sec)   p_kst 1.116279e-04   p_cons 9.791448e-01   p_joint 8.430233e-04

Joint ci ratio: 1.041302e-01	ci left: 7.758685e-04	ci right 8.616549e-04	k: 1415	n:1730000
Cons ci ratio: 4.350707e-04	ci left: 9.789206e-01	ci right 9.793472e-01	k: 1693903	n:1730000
KS ci ratio: 2.814237e-01	ci left: 9.637670e-05	ci right 1.284576e-04	k: 193	n:1730000
KRTAP1-5   1730000 perm   1627 sec   (1063 perm/sec)   p_kst 1.115607e-04   p_cons 9.791347e-01   p_joint 8.179191e-04

Joint ci ratio: 1.038372e-01	ci left: 7.758877e-04	ci right 8.614201e-04	k: 1423	n:1740000
Cons ci ratio: 4.338696e-04	ci left: 9.789164e-01	ci right 9.793418e-01	k: 1703686	n:1740000
KS ci ratio: 2.799841e-01	ci left: 9.689134e-05	ci right 1.289495e-04	k: 195	n:1740000
KRTAP1-5   1740000 perm   1644 sec   (1058 perm/sec)   p_kst 1.120690e-04   p_cons 9.791299e-01   p_joint 8.178161e-04

Joint ci ratio: 1.045378e-01	ci left: 7.608795e-04	ci right 8.453581e-04	k: 1404	n:1750000
Cons ci ratio: 4.326239e-04	ci left: 9.789174e-01	ci right 9.793416e-01	k: 1713478	n:1750000
KS ci ratio: 2.799842e-01	ci left: 9.633767e-05	ci right 1.282127e-04	k: 195	n:1750000
KRTAP1-5   1750000 perm   1661 sec   (1053 perm/sec)   p_kst 1.114286e-04   p_cons 9.791303e-01   p_joint 8.022857e-04

Joint ci ratio: 1.043524e-01	ci left: 7.593230e-04	ci right 8.434700e-04	k: 1409	n:1760000
Cons ci ratio: 4.313109e-04	ci left: 9.789258e-01	ci right 9.793487e-01	k: 1723283	n:1760000
KS ci ratio: 2.792727e-01	ci left: 9.631864e-05	ci right 1.280921e-04	k: 196	n:1760000
KRTAP1-5   1760000 perm   1678 sec   (1049 perm/sec)   p_kst 1.113636e-04   p_cons 9.791381e-01   p_joint 8.005682e-04

Joint ci ratio: 1.041311e-01	ci left: 7.583344e-04	ci right 8.421829e-04	k: 1415	n:1770000
Cons ci ratio: 4.300335e-04	ci left: 9.789319e-01	ci right 9.793535e-01	k: 1733084	n:1770000
KS ci ratio: 2.785666e-01	ci left: 9.629993e-05	ci right 1.279728e-04	k: 197	n:1770000
KRTAP1-5   1770000 perm   1695 sec   (1044 perm/sec)   p_kst 1.112994e-04   p_cons 9.791435e-01   p_joint 7.994350e-04

Joint ci ratio: 1.036562e-01	ci left: 7.611878e-04	ci right 8.449445e-04	k: 1428	n:1780000
Cons ci ratio: 4.287969e-04	ci left: 9.789351e-01	ci right 9.793555e-01	k: 1742880	n:1780000
KS ci ratio: 2.778658e-01	ci left: 9.628152e-05	ci right 1.278547e-04	k: 198	n:1780000
KRTAP1-5   1780000 perm   1712 sec   (1039 perm/sec)   p_kst 1.112360e-04   p_cons 9.791461e-01   p_joint 8.022472e-04

Joint ci ratio: 1.034755e-01	ci left: 7.596562e-04	ci right 8.430898e-04	k: 1433	n:1790000
Cons ci ratio: 4.275651e-04	ci left: 9.789388e-01	ci right 9.793580e-01	k: 1752677	n:1790000
KS ci ratio: 2.778659e-01	ci left: 9.574363e-05	ci right 1.271405e-04	k: 198	n:1790000
KRTAP1-5   1790000 perm   1730 sec   (1035 perm/sec)   p_kst 1.106145e-04   p_cons 9.791492e-01   p_joint 8.005587e-04

Joint ci ratio: 1.033675e-01	ci left: 7.570594e-04	ci right 8.401158e-04	k: 1436	n:1800000
Cons ci ratio: 4.262799e-04	ci left: 9.789486e-01	ci right 9.793665e-01	k: 1762485	n:1800000
KS ci ratio: 2.778660e-01	ci left: 9.521172e-05	ci right 1.264341e-04	k: 198	n:1800000
KRTAP1-5   1800000 perm   1747 sec   (1030 perm/sec)   p_kst 1.100000e-04   p_cons 9.791583e-01   p_joint 7.977778e-04

Joint ci ratio: 1.029385e-01	ci left: 7.593356e-04	ci right 8.422750e-04	k: 1448	n:1810000
Cons ci ratio: 4.250753e-04	ci left: 9.789516e-01	ci right 9.793684e-01	k: 1772281	n:1810000
KS ci ratio: 2.764801e-01	ci left: 9.571388e-05	ci right 1.269172e-04	k: 200	n:1810000
KRTAP1-5   1810000 perm   1764 sec   (1026 perm/sec)   p_kst 1.104972e-04   p_cons 9.791608e-01   p_joint 8.000000e-04

Joint ci ratio: 1.026908e-01	ci left: 7.589107e-04	ci right 8.415922e-04	k: 1455	n:1820000
Cons ci ratio: 4.239892e-04	ci left: 9.789441e-01	ci right 9.793598e-01	k: 1782058	n:1820000
KS ci ratio: 2.757949e-01	ci left: 9.569939e-05	ci right 1.268072e-04	k: 201	n:1820000
KRTAP1-5   1820000 perm   1782 sec   (1022 perm/sec)   p_kst 1.104396e-04   p_cons 9.791527e-01   p_joint 7.994505e-04

Joint ci ratio: 1.023748e-01	ci left: 7.595556e-04	ci right 8.420374e-04	k: 1464	n:1830000
Cons ci ratio: 4.226623e-04	ci left: 9.789609e-01	ci right 9.793753e-01	k: 1791879	n:1830000
KS ci ratio: 2.751147e-01	ci left: 9.568515e-05	ci right 1.266984e-04	k: 202	n:1830000
KRTAP1-5   1830000 perm   1799 sec   (1017 perm/sec)   p_kst 1.103825e-04   p_cons 9.791689e-01   p_joint 8.000000e-04

Joint ci ratio: 1.020272e-01	ci left: 7.607234e-04	ci right 8.430347e-04	k: 1474	n:1840000
Cons ci ratio: 4.215891e-04	ci left: 9.789540e-01	ci right 9.793673e-01	k: 1801657	n:1840000
KS ci ratio: 2.737693e-01	ci left: 9.617729e-05	ci right 1.271714e-04	k: 204	n:1840000
KRTAP1-5   1840000 perm   1816 sec   (1013 perm/sec)   p_kst 1.108696e-04   p_cons 9.791614e-01   p_joint 8.010870e-04

Joint ci ratio: 1.016488e-01	ci left: 7.624060e-04	ci right 8.445751e-04	k: 1485	n:1850000
Cons ci ratio: 4.205406e-04	ci left: 9.789455e-01	ci right 9.793578e-01	k: 1811432	n:1850000
KS ci ratio: 2.717877e-01	ci left: 9.716814e-05	ci right 1.282162e-04	k: 207	n:1850000
KRTAP1-5   1850000 perm   1834 sec   (1009 perm/sec)   p_kst 1.118919e-04   p_cons 9.791524e-01   p_joint 8.027027e-04

Joint ci ratio: 1.013423e-01	ci left: 7.630229e-04	ci right 8.449958e-04	k: 1494	n:1860000
Cons ci ratio: 4.194114e-04	ci left: 9.789458e-01	ci right 9.793570e-01	k: 1821223	n:1860000
KS ci ratio: 2.704904e-01	ci left: 9.764792e-05	ci right 1.286751e-04	k: 209	n:1860000
KRTAP1-5   1860000 perm   1852 sec   (1004 perm/sec)   p_kst 1.123656e-04   p_cons 9.791522e-01   p_joint 8.032258e-04

Joint ci ratio: 1.010050e-01	ci left: 7.641549e-04	ci right 8.459600e-04	k: 1504	n:1870000
Cons ci ratio: 4.183078e-04	ci left: 9.789445e-01	ci right 9.793546e-01	k: 1831011	n:1870000
KS ci ratio: 2.692114e-01	ci left: 9.812291e-05	ci right 1.291286e-04	k: 211	n:1870000
KRTAP1-5   1870000 perm   1870 sec   (1000 perm/sec)   p_kst 1.128342e-04   p_cons 9.791503e-01   p_joint 8.042781e-04

Joint ci ratio: 1.006710e-01	ci left: 7.652752e-04	ci right 8.469134e-04	k: 1514	n:1880000
Cons ci ratio: 4.171639e-04	ci left: 9.789480e-01	ci right 9.793569e-01	k: 1840808	n:1880000
KS ci ratio: 2.673264e-01	ci left: 9.908942e-05	ci right 1.301446e-04	k: 214	n:1880000
KRTAP1-5   1880000 perm   1888 sec   (996 perm/sec)   p_kst 1.138298e-04   p_cons 9.791532e-01   p_joint 8.053191e-04

Joint ci ratio: 1.003733e-01	ci left: 7.658684e-04	ci right 8.473140e-04	k: 1523	n:1890000
Cons ci ratio: 4.160616e-04	ci left: 9.789482e-01	ci right 9.793561e-01	k: 1850599	n:1890000
KS ci ratio: 2.660916e-01	ci left: 9.955259e-05	ci right 1.305848e-04	k: 216	n:1890000
KRTAP1-5   1890000 perm   1906 sec   (992 perm/sec)   p_kst 1.142857e-04   p_cons 9.791529e-01   p_joint 8.058201e-04

Joint ci ratio: 1.018558e-01	ci left: 7.392647e-04	ci right 8.191117e-04	k: 1479	n:1900000
Cons ci ratio: 4.149895e-04	ci left: 9.789464e-01	ci right 9.793532e-01	k: 1860386	n:1900000
KS ci ratio: 2.660917e-01	ci left: 9.902862e-05	ci right 1.298975e-04	k: 216	n:1900000
KRTAP1-5   1900000 perm   1924 sec   (987 perm/sec)   p_kst 1.136842e-04   p_cons 9.791505e-01   p_joint 7.784211e-04

Joint ci ratio: 1.013434e-01	ci left: 7.430481e-04	ci right 8.228760e-04	k: 1494	n:1910000
Cons ci ratio: 4.138141e-04	ci left: 9.789556e-01	ci right 9.793613e-01	k: 1870194	n:1910000
KS ci ratio: 2.660918e-01	ci left: 9.851015e-05	ci right 1.292174e-04	k: 216	n:1910000
KRTAP1-5   1910000 perm   1943 sec   (983 perm/sec)   p_kst 1.130890e-04   p_cons 9.791592e-01   p_joint 7.821990e-04

Joint ci ratio: 1.014455e-01	ci left: 7.376551e-04	ci right 8.169882e-04	k: 1491	n:1920000
Cons ci ratio: 4.127487e-04	ci left: 9.789548e-01	ci right 9.793594e-01	k: 1879983	n:1920000
KS ci ratio: 2.654808e-01	ci left: 9.848321e-05	ci right 1.290999e-04	k: 217	n:1920000
KRTAP1-5   1920000 perm   1961 sec   (979 perm/sec)   p_kst 1.130208e-04   p_cons 9.791578e-01   p_joint 7.765625e-04

Joint ci ratio: 1.011746e-01	ci left: 7.378731e-04	ci right 8.170051e-04	k: 1499	n:1930000
Cons ci ratio: 4.117594e-04	ci left: 9.789472e-01	ci right 9.793509e-01	k: 1889759	n:1930000
KS ci ratio: 2.648740e-01	ci left: 9.845662e-05	ci right 1.289834e-04	k: 218	n:1930000
KRTAP1-5   1930000 perm   1979 sec   (975 perm/sec)   p_kst 1.129534e-04   p_cons 9.791497e-01   p_joint 7.766839e-04

Joint ci ratio: 1.007056e-01	ci left: 7.411040e-04	ci right 8.201923e-04	k: 1513	n:1940000
Cons ci ratio: 4.106682e-04	ci left: 9.789506e-01	ci right 9.793532e-01	k: 1899556	n:1940000
KS ci ratio: 2.636726e-01	ci left: 9.891175e-05	ci right 1.294176e-04	k: 220	n:1940000
KRTAP1-5   1940000 perm   1997 sec   (971 perm/sec)   p_kst 1.134021e-04   p_cons 9.791526e-01   p_joint 7.798969e-04

Joint ci ratio: 1.004405e-01	ci left: 7.413028e-04	ci right 8.201919e-04	k: 1521	n:1950000
Cons ci ratio: 4.096474e-04	ci left: 9.789477e-01	ci right 9.793493e-01	k: 1909341	n:1950000
KS ci ratio: 2.624875e-01	ci left: 9.936253e-05	ci right 1.298471e-04	k: 222	n:1950000
KRTAP1-5   1950000 perm   2015 sec   (968 perm/sec)   p_kst 1.138462e-04   p_cons 9.791492e-01   p_joint 7.800000e-04

Joint ci ratio: 1.014803e-01	ci left: 7.221033e-04	ci right 7.997922e-04	k: 1490	n:1960000
Cons ci ratio: 4.086904e-04	ci left: 9.789393e-01	ci right 9.793399e-01	k: 1919115	n:1960000
KS ci ratio: 2.619010e-01	ci left: 9.933225e-05	ci right 1.297283e-04	k: 223	n:1960000
KRTAP1-5   1960000 perm   2034 sec   (964 perm/sec)   p_kst 1.137755e-04   p_cons 9.791403e-01   p_joint 7.602041e-04

Joint ci ratio: 1.012768e-01	ci left: 7.214063e-04	ci right 7.988552e-04	k: 1496	n:1970000
Cons ci ratio: 4.076031e-04	ci left: 9.789447e-01	ci right 9.793443e-01	k: 1928916	n:1970000
KS ci ratio: 2.613183e-01	ci left: 9.930235e-05	ci right 1.296106e-04	k: 224	n:1970000
KRTAP1-5   1970000 perm   2053 sec   (959 perm/sec)   p_kst 1.137056e-04   p_cons 9.791452e-01   p_joint 7.593909e-04

Joint ci ratio: 1.010409e-01	ci left: 7.212087e-04	ci right 7.984453e-04	k: 1503	n:1980000
Cons ci ratio: 4.065647e-04	ci left: 9.789460e-01	ci right 9.793445e-01	k: 1938709	n:1980000
KS ci ratio: 2.601646e-01	ci left: 9.974492e-05	ci right 1.300319e-04	k: 226	n:1980000
KRTAP1-5   1980000 perm   2073 sec   (955 perm/sec)   p_kst 1.141414e-04   p_cons 9.791460e-01   p_joint 7.590909e-04

Joint ci ratio: 1.007066e-01	ci left: 7.224829e-04	ci right 7.995849e-04	k: 1513	n:1990000
Cons ci ratio: 4.055991e-04	ci left: 9.789407e-01	ci right 9.793383e-01	k: 1948489	n:1990000
KS ci ratio: 2.601646e-01	ci left: 9.924368e-05	ci right 1.293785e-04	k: 226	n:1990000
KRTAP1-5   1990000 perm   2093 sec   (951 perm/sec)   p_kst 1.135678e-04   p_cons 9.791402e-01   p_joint 7.603015e-04

Joint ci ratio: 1.015493e-01	ci left: 7.066864e-04	ci right 7.827713e-04	k: 1488	n:2000000
Cons ci ratio: 4.046056e-04	ci left: 9.789390e-01	ci right 9.793356e-01	k: 1958276	n:2000000
KS ci ratio: 2.601647e-01	ci left: 9.874746e-05	ci right 1.287316e-04	k: 226	n:2000000
KRTAP1-5   2000000 perm   2112 sec   (947 perm/sec)   p_kst 1.130000e-04   p_cons 9.791380e-01   p_joint 7.440000e-04

Joint ci ratio: 1.012099e-01	ci left: 7.080195e-04	ci right 7.839781e-04	k: 1498	n:2010000
Cons ci ratio: 4.036243e-04	ci left: 9.789368e-01	ci right 9.793325e-01	k: 1968062	n:2010000
KS ci ratio: 2.595936e-01	ci left: 9.872128e-05	ci right 1.286210e-04	k: 227	n:2010000
KRTAP1-5   2010000 perm   2131 sec   (943 perm/sec)   p_kst 1.129353e-04   p_cons 9.791353e-01   p_joint 7.452736e-04

Joint ci ratio: 1.009409e-01	ci left: 7.083748e-04	ci right 7.841575e-04	k: 1506	n:2020000
Cons ci ratio: 4.025769e-04	ci left: 9.789421e-01	ci right 9.793367e-01	k: 1977863	n:2020000
KS ci ratio: 2.584624e-01	ci left: 9.915839e-05	ci right 1.290385e-04	k: 229	n:2020000
KRTAP1-5   2020000 perm   2150 sec   (940 perm/sec)   p_kst 1.133663e-04   p_cons 9.791401e-01   p_joint 7.455446e-04

Joint ci ratio: 1.012103e-01	ci left: 7.010438e-04	ci right 7.762543e-04	k: 1498	n:2030000
Cons ci ratio: 4.014940e-04	ci left: 9.789518e-01	ci right 9.793454e-01	k: 1987673	n:2030000
KS ci ratio: 2.584624e-01	ci left: 9.866992e-05	ci right 1.284029e-04	k: 229	n:2030000
KRTAP1-5   2030000 perm   2169 sec   (936 perm/sec)   p_kst 1.128079e-04   p_cons 9.791493e-01   p_joint 7.379310e-04

Joint ci ratio: 1.011430e-01	ci left: 6.985629e-04	ci right 7.734544e-04	k: 1500	n:2040000
Cons ci ratio: 4.005255e-04	ci left: 9.789505e-01	ci right 9.793432e-01	k: 1997461	n:2040000
KS ci ratio: 2.579024e-01	ci left: 9.864472e-05	ci right 1.282953e-04	k: 230	n:2040000
KRTAP1-5   2040000 perm   2188 sec   (932 perm/sec)   p_kst 1.127451e-04   p_cons 9.791475e-01   p_joint 7.352941e-04

Joint ci ratio: 1.009080e-01	ci left: 6.984836e-04	ci right 7.731823e-04	k: 1507	n:2050000
Cons ci ratio: 3.995258e-04	ci left: 9.789532e-01	ci right 9.793449e-01	k: 2007257	n:2050000
KS ci ratio: 2.573460e-01	ci left: 9.861983e-05	ci right 1.281887e-04	k: 231	n:2050000
KRTAP1-5   2050000 perm   2208 sec   (928 perm/sec)   p_kst 1.126829e-04   p_cons 9.791498e-01   p_joint 7.351220e-04

Joint ci ratio: 1.007079e-01	ci left: 6.979321e-04	ci right 7.724150e-04	k: 1513	n:2060000
Cons ci ratio: 3.985383e-04	ci left: 9.789554e-01	ci right 9.793461e-01	k: 2017052	n:2060000
KS ci ratio: 2.573461e-01	ci left: 9.814109e-05	ci right 1.275664e-04	k: 231	n:2060000
KRTAP1-5   2060000 perm   2228 sec   (925 perm/sec)   p_kst 1.121359e-04   p_cons 9.791515e-01   p_joint 7.344660e-04

Joint ci ratio: 1.004098e-01	ci left: 6.987990e-04	ci right 7.731407e-04	k: 1522	n:2070000
Cons ci ratio: 3.975768e-04	ci left: 9.789557e-01	ci right 9.793454e-01	k: 2026843	n:2070000
KS ci ratio: 2.562439e-01	ci left: 9.857099e-05	ci right 1.279784e-04	k: 233	n:2070000
KRTAP1-5   2070000 perm   2248 sec   (921 perm/sec)   p_kst 1.125604e-04   p_cons 9.791512e-01   p_joint 7.352657e-04

Joint ci ratio: 1.016533e-01	ci left: 6.781000e-04	ci right 7.511863e-04	k: 1485	n:2080000
Cons ci ratio: 3.966737e-04	ci left: 9.789506e-01	ci right 9.793394e-01	k: 2036623	n:2080000
KS ci ratio: 2.551557e-01	ci left: 9.899701e-05	ci right 1.283861e-04	k: 235	n:2080000
KRTAP1-5   2080000 perm   2268 sec   (917 perm/sec)   p_kst 1.129808e-04   p_cons 9.791457e-01   p_joint 7.139423e-04

Joint ci ratio: 1.079422e-01	ci left: 5.965763e-04	ci right 6.651068e-04	k: 1317	n:2090000
Cons ci ratio: 3.958833e-04	ci left: 9.789345e-01	ci right 9.793226e-01	k: 2046380	n:2090000
KS ci ratio: 2.624885e-01	ci left: 9.270662e-05	ci right 1.211493e-04	k: 222	n:2090000
KRTAP1-5   2090000 perm   2288 sec   (914 perm/sec)   p_kst 1.062201e-04   p_cons 9.791292e-01   p_joint 6.301435e-04

Joint ci ratio: 1.077788e-01	ci left: 5.955888e-04	ci right 6.638957e-04	k: 1321	n:2100000
Cons ci ratio: 3.950145e-04	ci left: 9.789272e-01	ci right 9.793144e-01	k: 2056155	n:2100000
KS ci ratio: 2.624886e-01	ci left: 9.226516e-05	ci right 1.205724e-04	k: 222	n:2100000
KRTAP1-5   2100000 perm   2309 sec   (910 perm/sec)   p_kst 1.057143e-04   p_cons 9.791214e-01   p_joint 6.290476e-04

Joint ci ratio: 1.077382e-01	ci left: 5.932272e-04	ci right 6.612360e-04	k: 1322	n:2110000
Cons ci ratio: 3.941697e-04	ci left: 9.789180e-01	ci right 9.793044e-01	k: 2065926	n:2110000
KS ci ratio: 2.624887e-01	ci left: 9.182788e-05	ci right 1.200009e-04	k: 222	n:2110000
KRTAP1-5   2110000 perm   2329 sec   (906 perm/sec)   p_kst 1.052133e-04   p_cons 9.791118e-01   p_joint 6.265403e-04

Joint ci ratio: 1.075758e-01	ci left: 5.922650e-04	ci right 6.600546e-04	k: 1326	n:2120000
Cons ci ratio: 3.931986e-04	ci left: 9.789227e-01	ci right 9.793081e-01	k: 2075726	n:2120000
KS ci ratio: 2.613194e-01	ci left: 9.227620e-05	ci right 1.204401e-04	k: 224	n:2120000
KRTAP1-5   2120000 perm   2349 sec   (902 perm/sec)   p_kst 1.056604e-04   p_cons 9.791160e-01   p_joint 6.254717e-04

Joint ci ratio: 1.073334e-01	ci left: 5.922256e-04	ci right 6.598483e-04	k: 1332	n:2130000
Cons ci ratio: 3.922707e-04	ci left: 9.789235e-01	ci right 9.793080e-01	k: 2085518	n:2130000
KS ci ratio: 2.613195e-01	ci left: 9.184297e-05	ci right 1.198746e-04	k: 224	n:2130000
KRTAP1-5   2130000 perm   2369 sec   (899 perm/sec)   p_kst 1.051643e-04   p_cons 9.791164e-01   p_joint 6.253521e-04

Joint ci ratio: 1.071327e-01	ci left: 5.917319e-04	ci right 6.591640e-04	k: 1337	n:2140000
Cons ci ratio: 3.913718e-04	ci left: 9.789220e-01	ci right 9.793057e-01	k: 2095305	n:2140000
KS ci ratio: 2.613195e-01	ci left: 9.141380e-05	ci right 1.193145e-04	k: 224	n:2140000
KRTAP1-5   2140000 perm   2390 sec   (895 perm/sec)   p_kst 1.046729e-04   p_cons 9.791145e-01   p_joint 6.247664e-04

Joint ci ratio: 1.068138e-01	ci left: 5.926011e-04	ci right 6.599186e-04	k: 1345	n:2150000
Cons ci ratio: 3.904523e-04	ci left: 9.789233e-01	ci right 9.793061e-01	k: 2105098	n:2150000
KS ci ratio: 2.601657e-01	ci left: 9.185806e-05	ci right 1.197504e-04	k: 226	n:2150000
KRTAP1-5   2150000 perm   2410 sec   (892 perm/sec)   p_kst 1.051163e-04   p_cons 9.791153e-01   p_joint 6.255814e-04

Joint ci ratio: 1.069333e-01	ci left: 5.885057e-04	ci right 6.554375e-04	k: 1342	n:2160000
Cons ci ratio: 3.895877e-04	ci left: 9.789195e-01	ci right 9.793014e-01	k: 2114880	n:2160000
KS ci ratio: 2.595946e-01	ci left: 9.186560e-05	ci right 1.196891e-04	k: 227	n:2160000
KRTAP1-5   2160000 perm   2431 sec   (888 perm/sec)   p_kst 1.050926e-04   p_cons 9.791111e-01   p_joint 6.212963e-04

Joint ci ratio: 1.066952e-01	ci left: 5.884848e-04	ci right 6.552558e-04	k: 1348	n:2170000
Cons ci ratio: 3.886063e-04	ci left: 9.789287e-01	ci right 9.793096e-01	k: 2124690	n:2170000
KS ci ratio: 2.590272e-01	ci left: 9.187313e-05	ci right 1.196282e-04	k: 228	n:2170000
KRTAP1-5   2170000 perm   2452 sec   (885 perm/sec)   p_kst 1.050691e-04   p_cons 9.791198e-01   p_joint 6.211982e-04

Joint ci ratio: 1.064587e-01	ci left: 5.884643e-04	ci right 6.550757e-04	k: 1354	n:2180000
Cons ci ratio: 3.877192e-04	ci left: 9.789286e-01	ci right 9.793087e-01	k: 2134480	n:2180000
KS ci ratio: 2.584635e-01	ci left: 9.188066e-05	ci right 1.195679e-04	k: 229	n:2180000
KRTAP1-5   2180000 perm   2472 sec   (882 perm/sec)   p_kst 1.050459e-04   p_cons 9.791193e-01   p_joint 6.211009e-04

Joint ci ratio: 1.062629e-01	ci left: 5.879996e-04	ci right 6.544283e-04	k: 1359	n:2190000
Cons ci ratio: 3.868554e-04	ci left: 9.789266e-01	ci right 9.793059e-01	k: 2144266	n:2190000
KS ci ratio: 2.584635e-01	ci left: 9.146111e-05	ci right 1.190219e-04	k: 229	n:2190000
KRTAP1-5   2190000 perm   2492 sec   (879 perm/sec)   p_kst 1.045662e-04   p_cons 9.791169e-01   p_joint 6.205479e-04

Joint ci ratio: 1.060293e-01	ci left: 5.879817e-04	ci right 6.542533e-04	k: 1365	n:2200000
Cons ci ratio: 3.859973e-04	ci left: 9.789247e-01	ci right 9.793031e-01	k: 2154052	n:2200000
KS ci ratio: 2.584636e-01	ci left: 9.104538e-05	ci right 1.184809e-04	k: 229	n:2200000
KRTAP1-5   2200000 perm   2513 sec   (876 perm/sec)   p_kst 1.040909e-04   p_cons 9.791145e-01   p_joint 6.204545e-04

Joint ci ratio: 1.060294e-01	ci left: 5.853211e-04	ci right 6.512929e-04	k: 1365	n:2210000
Cons ci ratio: 3.851534e-04	ci left: 9.789219e-01	ci right 9.792995e-01	k: 2163836	n:2210000
KS ci ratio: 2.579035e-01	ci left: 9.105662e-05	ci right 1.184265e-04	k: 230	n:2210000
KRTAP1-5   2210000 perm   2534 sec   (872 perm/sec)   p_kst 1.040724e-04   p_cons 9.791113e-01   p_joint 6.176471e-04

Joint ci ratio: 1.057202e-01	ci left: 5.861928e-04	ci right 6.520582e-04	k: 1373	n:2220000
Cons ci ratio: 3.843785e-04	ci left: 9.789123e-01	ci right 9.792891e-01	k: 2173605	n:2220000
KS ci ratio: 2.573471e-01	ci left: 9.106782e-05	ci right 1.183725e-04	k: 231	n:2220000
KRTAP1-5   2220000 perm   2555 sec   (869 perm/sec)   p_kst 1.040541e-04   p_cons 9.791014e-01   p_joint 6.184685e-04

Joint ci ratio: 1.056051e-01	ci left: 5.848738e-04	ci right 6.505150e-04	k: 1376	n:2230000
Cons ci ratio: 3.835074e-04	ci left: 9.789137e-01	ci right 9.792896e-01	k: 2183398	n:2230000
KS ci ratio: 2.567943e-01	ci left: 9.107898e-05	ci right 1.183190e-04	k: 232	n:2230000
KRTAP1-5   2230000 perm   2576 sec   (866 perm/sec)   p_kst 1.040359e-04   p_cons 9.791022e-01   p_joint 6.170404e-04

Joint ci ratio: 1.076182e-01	ci left: 5.601016e-04	ci right 6.242367e-04	k: 1325	n:2240000
Cons ci ratio: 3.826505e-04	ci left: 9.789141e-01	ci right 9.792892e-01	k: 2193189	n:2240000
KS ci ratio: 2.562450e-01	ci left: 9.109011e-05	ci right 1.182658e-04	k: 233	n:2240000
KRTAP1-5   2240000 perm   2597 sec   (862 perm/sec)   p_kst 1.040179e-04   p_cons 9.791022e-01   p_joint 5.915179e-04

Joint ci ratio: 1.070943e-01	ci left: 5.632349e-04	ci right 6.273951e-04	k: 1338	n:2250000
Cons ci ratio: 3.816914e-04	ci left: 9.789261e-01	ci right 9.793002e-01	k: 2203006	n:2250000
KS ci ratio: 2.546179e-01	ci left: 9.193325e-05	ci right 1.191587e-04	k: 236	n:2250000
KRTAP1-5   2250000 perm   2619 sec   (859 perm/sec)   p_kst 1.048889e-04   p_cons 9.791138e-01   p_joint 5.946667e-04

Joint ci ratio: 1.066965e-01	ci left: 5.650492e-04	ci right 6.291620e-04	k: 1348	n:2260000
Cons ci ratio: 3.807765e-04	ci left: 9.789340e-01	ci right 9.793073e-01	k: 2212814	n:2260000
KS ci ratio: 2.540824e-01	ci left: 9.194073e-05	ci right 1.191021e-04	k: 237	n:2260000
KRTAP1-5   2260000 perm   2640 sec   (856 perm/sec)   p_kst 1.048673e-04   p_cons 9.791212e-01   p_joint 5.964602e-04

Joint ci ratio: 1.063815e-01	ci left: 5.659904e-04	ci right 6.300085e-04	k: 1356	n:2270000
Cons ci ratio: 3.799009e-04	ci left: 9.789383e-01	ci right 9.793107e-01	k: 2222614	n:2270000
KS ci ratio: 2.535503e-01	ci left: 9.194822e-05	ci right 1.190459e-04	k: 238	n:2270000
KRTAP1-5   2270000 perm   2661 sec   (853 perm/sec)   p_kst 1.048458e-04   p_cons 9.791251e-01   p_joint 5.973568e-04

Joint ci ratio: 1.060304e-01	ci left: 5.673505e-04	ci right 6.312974e-04	k: 1365	n:2280000
Cons ci ratio: 3.790679e-04	ci left: 9.789386e-01	ci right 9.793102e-01	k: 2232405	n:2280000
KS ci ratio: 2.530215e-01	ci left: 9.195569e-05	ci right 1.189901e-04	k: 239	n:2280000
KRTAP1-5   2280000 perm   2683 sec   (850 perm/sec)   p_kst 1.048246e-04   p_cons 9.791250e-01   p_joint 5.986842e-04

Joint ci ratio: 1.058756e-01	ci left: 5.665734e-04	ci right 6.303337e-04	k: 1369	n:2290000
Cons ci ratio: 3.782565e-04	ci left: 9.789371e-01	ci right 9.793079e-01	k: 2242192	n:2290000
KS ci ratio: 2.530216e-01	ci left: 9.155414e-05	ci right 1.184705e-04	k: 239	n:2290000
KRTAP1-5   2290000 perm   2705 sec   (847 perm/sec)   p_kst 1.043668e-04   p_cons 9.791231e-01   p_joint 5.978166e-04

Joint ci ratio: 1.056445e-01	ci left: 5.666497e-04	ci right 6.302708e-04	k: 1375	n:2300000
Cons ci ratio: 3.773820e-04	ci left: 9.789431e-01	ci right 9.793131e-01	k: 2251996	n:2300000
KS ci ratio: 2.530217e-01	ci left: 9.115607e-05	ci right 1.179554e-04	k: 239	n:2300000
KRTAP1-5   2300000 perm   2727 sec   (843 perm/sec)   p_kst 1.039130e-04   p_cons 9.791287e-01   p_joint 5.978261e-04

Joint ci ratio: 1.053768e-01	ci left: 5.671470e-04	ci right 6.306526e-04	k: 1382	n:2310000
Cons ci ratio: 3.765375e-04	ci left: 9.789464e-01	ci right 9.793156e-01	k: 2261794	n:2310000
KS ci ratio: 2.530217e-01	ci left: 9.076145e-05	ci right 1.174448e-04	k: 239	n:2310000
KRTAP1-5   2310000 perm   2750 sec   (840 perm/sec)   p_kst 1.034632e-04   p_cons 9.791316e-01   p_joint 5.982684e-04

Joint ci ratio: 1.050355e-01	ci left: 5.684797e-04	ci right 6.319156e-04	k: 1391	n:2320000
Cons ci ratio: 3.757977e-04	ci left: 9.789389e-01	ci right 9.793073e-01	k: 2271567	n:2320000
KS ci ratio: 2.519739e-01	ci left: 9.117776e-05	ci right 1.178551e-04	k: 241	n:2320000
KRTAP1-5   2320000 perm   2772 sec   (837 perm/sec)   p_kst 1.038793e-04   p_cons 9.791237e-01   p_joint 5.995690e-04

Joint ci ratio: 1.048474e-01	ci left: 5.681295e-04	ci right 6.314057e-04	k: 1396	n:2330000
Cons ci ratio: 3.750189e-04	ci left: 9.789362e-01	ci right 9.793038e-01	k: 2281351	n:2330000
KS ci ratio: 2.509391e-01	ci left: 9.159073e-05	ci right 1.182616e-04	k: 243	n:2330000
KRTAP1-5   2330000 perm   2795 sec   (834 perm/sec)   p_kst 1.042918e-04   p_cons 9.791206e-01   p_joint 5.991416e-04

Joint ci ratio: 1.046603e-01	ci left: 5.677823e-04	ci right 6.309001e-04	k: 1401	n:2340000
Cons ci ratio: 3.741666e-04	ci left: 9.789421e-01	ci right 9.793089e-01	k: 2291155	n:2340000
KS ci ratio: 2.509391e-01	ci left: 9.119931e-05	ci right 1.177562e-04	k: 243	n:2340000
KRTAP1-5   2340000 perm   2818 sec   (830 perm/sec)   p_kst 1.038462e-04   p_cons 9.791261e-01   p_joint 5.987179e-04

Joint ci ratio: 1.055684e-01	ci left: 5.554218e-04	ci right 6.177345e-04	k: 1377	n:2350000
Cons ci ratio: 3.733629e-04	ci left: 9.789432e-01	ci right 9.793092e-01	k: 2300948	n:2350000
KS ci ratio: 2.509392e-01	ci left: 9.081122e-05	ci right 1.172551e-04	k: 243	n:2350000
KRTAP1-5   2350000 perm   2841 sec   (827 perm/sec)   p_kst 1.034043e-04   p_cons 9.791268e-01   p_joint 5.859574e-04

Joint ci ratio: 1.053393e-01	ci left: 5.555436e-04	ci right 6.177264e-04	k: 1383	n:2360000
Cons ci ratio: 3.725875e-04	ci left: 9.789418e-01	ci right 9.793070e-01	k: 2310735	n:2360000
KS ci ratio: 2.509393e-01	ci left: 9.042643e-05	ci right 1.167583e-04	k: 243	n:2360000
KRTAP1-5   2360000 perm   2864 sec   (824 perm/sec)   p_kst 1.029661e-04   p_cons 9.791250e-01   p_joint 5.860169e-04

Joint ci ratio: 1.051875e-01	ci left: 5.548429e-04	ci right 6.168521e-04	k: 1387	n:2370000
Cons ci ratio: 3.718323e-04	ci left: 9.789387e-01	ci right 9.793032e-01	k: 2320518	n:2370000
KS ci ratio: 2.509393e-01	ci left: 9.004488e-05	ci right 1.162657e-04	k: 243	n:2370000
KRTAP1-5   2370000 perm   2887 sec   (821 perm/sec)   p_kst 1.025316e-04   p_cons 9.791215e-01   p_joint 5.852321e-04

Joint ci ratio: 1.049985e-01	ci left: 5.545572e-04	ci right 6.164164e-04	k: 1392	n:2380000
Cons ci ratio: 3.710320e-04	ci left: 9.789411e-01	ci right 9.793048e-01	k: 2330314	n:2380000
KS ci ratio: 2.504267e-01	ci left: 9.006031e-05	ci right 1.162237e-04	k: 244	n:2380000
KRTAP1-5   2380000 perm   2910 sec   (818 perm/sec)   p_kst 1.025210e-04   p_cons 9.791235e-01   p_joint 5.848739e-04

Joint ci ratio: 1.048482e-01	ci left: 5.538666e-04	ci right 6.155548e-04	k: 1396	n:2390000
Cons ci ratio: 3.701649e-04	ci left: 9.789515e-01	ci right 9.793143e-01	k: 2340129	n:2390000
KS ci ratio: 2.499172e-01	ci left: 9.007567e-05	ci right 1.161819e-04	k: 245	n:2390000
KRTAP1-5   2390000 perm   2933 sec   (815 perm/sec)   p_kst 1.025105e-04   p_cons 9.791335e-01   p_joint 5.841004e-04

Joint ci ratio: 1.048483e-01	ci left: 5.515588e-04	ci right 6.129900e-04	k: 1396	n:2400000
Cons ci ratio: 3.693603e-04	ci left: 9.789555e-01	ci right 9.793175e-01	k: 2349929	n:2400000
KS ci ratio: 2.494107e-01	ci left: 9.009096e-05	ci right 1.161405e-04	k: 246	n:2400000
KRTAP1-5   2400000 perm   2956 sec   (812 perm/sec)   p_kst 1.025000e-04   p_cons 9.791371e-01   p_joint 5.816667e-04

Joint ci ratio: 1.046985e-01	ci left: 5.508864e-04	ci right 6.121497e-04	k: 1400	n:2410000
Cons ci ratio: 3.685758e-04	ci left: 9.789578e-01	ci right 9.793191e-01	k: 2359725	n:2410000
KS ci ratio: 2.489074e-01	ci left: 9.010616e-05	ci right 1.160994e-04	k: 247	n:2410000
KRTAP1-5   2410000 perm   2979 sec   (809 perm/sec)   p_kst 1.024896e-04   p_cons 9.791390e-01   p_joint 5.809129e-04

Joint ci ratio: 1.043638e-01	ci left: 5.522318e-04	ci right 6.134363e-04	k: 1409	n:2420000
Cons ci ratio: 3.679675e-04	ci left: 9.789410e-01	ci right 9.793017e-01	k: 2369475	n:2420000
KS ci ratio: 2.484071e-01	ci left: 9.012130e-05	ci right 1.160586e-04	k: 248	n:2420000
KRTAP1-5   2420000 perm   3002 sec   (806 perm/sec)   p_kst 1.024793e-04   p_cons 9.791219e-01   p_joint 5.822314e-04

Joint ci ratio: 1.041793e-01	ci left: 5.519632e-04	ci right 6.130232e-04	k: 1414	n:2430000
Cons ci ratio: 3.671438e-04	ci left: 9.789487e-01	ci right 9.793086e-01	k: 2379284	n:2430000
KS ci ratio: 2.474154e-01	ci left: 9.052235e-05	ci right 1.164551e-04	k: 250	n:2430000
KRTAP1-5   2430000 perm   3025 sec   (803 perm/sec)   p_kst 1.028807e-04   p_cons 9.791292e-01   p_joint 5.818930e-04

Joint ci ratio: 1.039591e-01	ci left: 5.520961e-04	ci right 6.130338e-04	k: 1420	n:2440000
Cons ci ratio: 3.663587e-04	ci left: 9.789527e-01	ci right 9.793118e-01	k: 2389084	n:2440000
KS ci ratio: 2.469240e-01	ci left: 9.053581e-05	ci right 1.164130e-04	k: 251	n:2440000
KRTAP1-5   2440000 perm   3049 sec   (800 perm/sec)   p_kst 1.028689e-04   p_cons 9.791328e-01   p_joint 5.819672e-04

Joint ci ratio: 1.036314e-01	ci left: 5.534207e-04	ci right 6.143004e-04	k: 1429	n:2450000
Cons ci ratio: 3.656443e-04	ci left: 9.789492e-01	ci right 9.793076e-01	k: 2398866	n:2450000
KS ci ratio: 2.454671e-01	ci left: 9.131523e-05	ci right 1.172377e-04	k: 254	n:2450000
KRTAP1-5   2450000 perm   3072 sec   (797 perm/sec)   p_kst 1.036735e-04   p_cons 9.791290e-01   p_joint 5.832653e-04

Joint ci ratio: 1.034868e-01	ci left: 5.527550e-04	ci right 6.134713e-04	k: 1433	n:2460000
Cons ci ratio: 3.648941e-04	ci left: 9.789503e-01	ci right 9.793079e-01	k: 2408659	n:2460000
KS ci ratio: 2.454671e-01	ci left: 9.094403e-05	ci right 1.167611e-04	k: 254	n:2460000
KRTAP1-5   2460000 perm   3096 sec   (795 perm/sec)   p_kst 1.032520e-04   p_cons 9.791297e-01   p_joint 5.825203e-04

Joint ci ratio: 1.033428e-01	ci left: 5.520946e-04	ci right 6.126490e-04	k: 1437	n:2470000
Cons ci ratio: 3.641522e-04	ci left: 9.789509e-01	ci right 9.793079e-01	k: 2418451	n:2470000
KS ci ratio: 2.449873e-01	ci left: 9.095582e-05	ci right 1.167181e-04	k: 255	n:2470000
KRTAP1-5   2470000 perm   3119 sec   (792 perm/sec)   p_kst 1.032389e-04   p_cons 9.791300e-01   p_joint 5.817814e-04

Joint ci ratio: 1.031994e-01	ci left: 5.514397e-04	ci right 6.118332e-04	k: 1441	n:2480000
Cons ci ratio: 3.634004e-04	ci left: 9.789532e-01	ci right 9.793094e-01	k: 2428247	n:2480000
KS ci ratio: 2.445102e-01	ci left: 9.096756e-05	ci right 1.166753e-04	k: 256	n:2480000
KRTAP1-5   2480000 perm   3142 sec   (789 perm/sec)   p_kst 1.032258e-04   p_cons 9.791319e-01   p_joint 5.810484e-04

Joint ci ratio: 1.030209e-01	ci left: 5.511813e-04	ci right 6.114358e-04	k: 1446	n:2490000
Cons ci ratio: 3.626390e-04	ci left: 9.789571e-01	ci right 9.793125e-01	k: 2438047	n:2490000
KS ci ratio: 2.435642e-01	ci left: 9.135633e-05	ci right 1.170590e-04	k: 258	n:2490000
KRTAP1-5   2490000 perm   3165 sec   (787 perm/sec)   p_kst 1.036145e-04   p_cons 9.791353e-01   p_joint 5.807229e-04

Joint ci ratio: 1.027020e-01	ci left: 5.524840e-04	ci right 6.126826e-04	k: 1455	n:2500000
Cons ci ratio: 3.618930e-04	ci left: 9.789597e-01	ci right 9.793144e-01	k: 2447844	n:2500000
KS ci ratio: 2.430954e-01	ci left: 9.136651e-05	ci right 1.170151e-04	k: 259	n:2500000
KRTAP1-5   2500000 perm   3188 sec   (784 perm/sec)   p_kst 1.036000e-04   p_cons 9.791376e-01   p_joint 5.820000e-04

Joint ci ratio: 1.035958e-01	ci left: 5.405795e-04	ci right 6.000248e-04	k: 1430	n:2510000
Cons ci ratio: 3.612466e-04	ci left: 9.789515e-01	ci right 9.793056e-01	k: 2457614	n:2510000
KS ci ratio: 2.426292e-01	ci left: 9.137667e-05	ci right 1.169715e-04	k: 260	n:2510000
KRTAP1-5   2510000 perm   3210 sec   (782 perm/sec)   p_kst 1.035857e-04   p_cons 9.791291e-01   p_joint 5.697211e-04

Joint ci ratio: 1.033434e-01	ci left: 5.411402e-04	ci right 6.004934e-04	k: 1437	n:2520000
Cons ci ratio: 3.604636e-04	ci left: 9.789593e-01	ci right 9.793126e-01	k: 2467424	n:2520000
KS ci ratio: 2.417049e-01	ci left: 9.175956e-05	ci right 1.173490e-04	k: 262	n:2520000
KRTAP1-5   2520000 perm   3234 sec   (779 perm/sec)   p_kst 1.039683e-04   p_cons 9.791365e-01   p_joint 5.702381e-04

Joint ci ratio: 1.031284e-01	ci left: 5.413116e-04	ci right 6.005527e-04	k: 1443	n:2530000
Cons ci ratio: 3.597414e-04	ci left: 9.789607e-01	ci right 9.793133e-01	k: 2477218	n:2530000
KS ci ratio: 2.412467e-01	ci left: 9.176821e-05	ci right 1.173043e-04	k: 263	n:2530000
KRTAP1-5   2530000 perm   3258 sec   (777 perm/sec)   p_kst 1.039526e-04   p_cons 9.791375e-01   p_joint 5.703557e-04

Joint ci ratio: 1.027731e-01	ci left: 5.430161e-04	ci right 6.022266e-04	k: 1453	n:2540000
Cons ci ratio: 3.590476e-04	ci left: 9.789593e-01	ci right 9.793113e-01	k: 2487005	n:2540000
KS ci ratio: 2.407911e-01	ci left: 9.177685e-05	ci right 1.172599e-04	k: 264	n:2540000
KRTAP1-5   2540000 perm   3281 sec   (774 perm/sec)   p_kst 1.039370e-04   p_cons 9.791358e-01   p_joint 5.720472e-04

Joint ci ratio: 1.025617e-01	ci left: 5.431792e-04	ci right 6.022783e-04	k: 1459	n:2550000
Cons ci ratio: 3.583373e-04	ci left: 9.789603e-01	ci right 9.793115e-01	k: 2496798	n:2550000
KS ci ratio: 2.407911e-01	ci left: 9.141694e-05	ci right 1.168001e-04	k: 264	n:2550000
KRTAP1-5   2550000 perm   3305 sec   (772 perm/sec)   p_kst 1.035294e-04   p_cons 9.791365e-01   p_joint 5.721569e-04

Joint ci ratio: 1.024215e-01	ci left: 5.425798e-04	ci right 6.015282e-04	k: 1463	n:2560000
Cons ci ratio: 3.576756e-04	ci left: 9.789562e-01	ci right 9.793068e-01	k: 2506578	n:2560000
KS ci ratio: 2.398875e-01	ci left: 9.179405e-05	ci right 1.171721e-04	k: 266	n:2560000
KRTAP1-5   2560000 perm   3329 sec   (769 perm/sec)   p_kst 1.039062e-04   p_cons 9.791320e-01   p_joint 5.714844e-04

Joint ci ratio: 1.022819e-01	ci left: 5.419852e-04	ci right 6.007838e-04	k: 1467	n:2570000
Cons ci ratio: 3.569801e-04	ci left: 9.789564e-01	ci right 9.793063e-01	k: 2516369	n:2570000
KS ci ratio: 2.398876e-01	ci left: 9.143687e-05	ci right 1.167161e-04	k: 266	n:2570000
KRTAP1-5   2570000 perm   3352 sec   (767 perm/sec)   p_kst 1.035019e-04   p_cons 9.791319e-01   p_joint 5.708171e-04

Joint ci ratio: 1.021776e-01	ci left: 5.410175e-04	ci right 5.996478e-04	k: 1470	n:2580000
Cons ci ratio: 3.562853e-04	ci left: 9.789570e-01	ci right 9.793062e-01	k: 2526161	n:2580000
KS ci ratio: 2.398876e-01	ci left: 9.108246e-05	ci right 1.162638e-04	k: 266	n:2580000
KRTAP1-5   2580000 perm   3376 sec   (764 perm/sec)   p_kst 1.031008e-04   p_cons 9.791322e-01   p_joint 5.697674e-04

Joint ci ratio: 1.020044e-01	ci left: 5.408099e-04	ci right 5.993123e-04	k: 1475	n:2590000
Cons ci ratio: 3.555811e-04	ci left: 9.789592e-01	ci right 9.793077e-01	k: 2535957	n:2590000
KS ci ratio: 2.398877e-01	ci left: 9.073079e-05	ci right 1.158149e-04	k: 266	n:2590000
KRTAP1-5   2590000 perm   3400 sec   (762 perm/sec)   p_kst 1.027027e-04   p_cons 9.791340e-01   p_joint 5.694981e-04

Joint ci ratio: 1.017977e-01	ci left: 5.409787e-04	ci right 5.993737e-04	k: 1481	n:2600000
Cons ci ratio: 3.549345e-04	ci left: 9.789551e-01	ci right 9.793030e-01	k: 2545737	n:2600000
KS ci ratio: 2.389942e-01	ci left: 9.110491e-05	ci right 1.161847e-04	k: 268	n:2600000
KRTAP1-5   2600000 perm   3425 sec   (759 perm/sec)   p_kst 1.030769e-04   p_cons 9.791296e-01   p_joint 5.696154e-04

Joint ci ratio: 1.023871e-01	ci left: 5.325588e-04	ci right 5.903978e-04	k: 1464	n:2610000
Cons ci ratio: 3.543013e-04	ci left: 9.789500e-01	ci right 9.792972e-01	k: 2555514	n:2610000
KS ci ratio: 2.389943e-01	ci left: 9.075585e-05	ci right 1.157396e-04	k: 268	n:2610000
KRTAP1-5   2610000 perm   3449 sec   (757 perm/sec)   p_kst 1.026820e-04   p_cons 9.791241e-01   p_joint 5.609195e-04

Joint ci ratio: 1.020740e-01	ci left: 5.338734e-04	ci right 5.916672e-04	k: 1473	n:2620000
Cons ci ratio: 3.536517e-04	ci left: 9.789471e-01	ci right 9.792938e-01	k: 2565297	n:2620000
KS ci ratio: 2.376725e-01	ci left: 9.148612e-05	ci right 1.165111e-04	k: 271	n:2620000
KRTAP1-5   2620000 perm   3473 sec   (754 perm/sec)   p_kst 1.034351e-04   p_cons 9.791210e-01   p_joint 5.622137e-04

Joint ci ratio: 1.019703e-01	ci left: 5.329550e-04	ci right 5.905873e-04	k: 1476	n:2630000
Cons ci ratio: 3.529794e-04	ci left: 9.789474e-01	ci right 9.792934e-01	k: 2575088	n:2630000
KS ci ratio: 2.376726e-01	ci left: 9.113827e-05	ci right 1.160681e-04	k: 271	n:2630000
KRTAP1-5   2630000 perm   3498 sec   (752 perm/sec)   p_kst 1.030418e-04   p_cons 9.791209e-01   p_joint 5.612167e-04

Joint ci ratio: 1.017295e-01	ci left: 5.335203e-04	ci right 5.910693e-04	k: 1483	n:2640000
Cons ci ratio: 3.524023e-04	ci left: 9.789370e-01	ci right 9.792824e-01	k: 2584851	n:2640000
KS ci ratio: 2.368035e-01	ci left: 9.150560e-05	ci right 1.164309e-04	k: 273	n:2640000
KRTAP1-5   2640000 perm   3522 sec   (749 perm/sec)   p_kst 1.034091e-04   p_cons 9.791102e-01   p_joint 5.617424e-04

Joint ci ratio: 1.015586e-01	ci left: 5.333458e-04	ci right 5.907736e-04	k: 1488	n:2650000
Cons ci ratio: 3.517306e-04	ci left: 9.789380e-01	ci right 9.792828e-01	k: 2594644	n:2650000
KS ci ratio: 2.363726e-01	ci left: 9.151528e-05	ci right 1.163913e-04	k: 274	n:2650000
KRTAP1-5   2650000 perm   3547 sec   (747 perm/sec)   p_kst 1.033962e-04   p_cons 9.791109e-01   p_joint 5.615094e-04

Joint ci ratio: 1.016954e-01	ci left: 5.298752e-04	ci right 5.870107e-04	k: 1484	n:2660000
Cons ci ratio: 3.510402e-04	ci left: 9.789417e-01	ci right 9.792858e-01	k: 2604444	n:2660000
KS ci ratio: 2.359440e-01	ci left: 9.152494e-05	ci right 1.163519e-04	k: 275	n:2660000
KRTAP1-5   2660000 perm   3572 sec   (745 perm/sec)   p_kst 1.033835e-04   p_cons 9.791143e-01   p_joint 5.578947e-04

Joint ci ratio: 1.032373e-01	ci left: 5.118332e-04	ci right 5.679109e-04	k: 1440	n:2670000
Cons ci ratio: 3.504660e-04	ci left: 9.789322e-01	ci right 9.792757e-01	k: 2614209	n:2670000
KS ci ratio: 2.350937e-01	ci left: 9.188702e-05	ci right 1.167093e-04	k: 277	n:2670000
KRTAP1-5   2670000 perm   3596 sec   (742 perm/sec)   p_kst 1.037453e-04   p_cons 9.791045e-01   p_joint 5.393258e-04

Joint ci ratio: 1.030944e-01	ci left: 5.113774e-04	ci right 5.673229e-04	k: 1444	n:2680000
Cons ci ratio: 3.497830e-04	ci left: 9.789359e-01	ci right 9.792787e-01	k: 2624009	n:2680000
KS ci ratio: 2.346720e-01	ci left: 9.189533e-05	ci right 1.166688e-04	k: 278	n:2680000
KRTAP1-5   2680000 perm   3621 sec   (740 perm/sec)   p_kst 1.037313e-04   p_cons 9.791078e-01   p_joint 5.388060e-04

Joint ci ratio: 1.029165e-01	ci left: 5.112873e-04	ci right 5.671205e-04	k: 1449	n:2690000
Cons ci ratio: 3.491166e-04	ci left: 9.789381e-01	ci right 9.792802e-01	k: 2633805	n:2690000
KS ci ratio: 2.346720e-01	ci left: 9.155371e-05	ci right 1.162351e-04	k: 278	n:2690000
KRTAP1-5   2690000 perm   3646 sec   (738 perm/sec)   p_kst 1.033457e-04   p_cons 9.791097e-01   p_joint 5.386617e-04

Joint ci ratio: 1.027042e-01	ci left: 5.115587e-04	ci right 5.672994e-04	k: 1455	n:2700000
Cons ci ratio: 3.485266e-04	ci left: 9.789316e-01	ci right 9.792733e-01	k: 2643578	n:2700000
KS ci ratio: 2.346721e-01	ci left: 9.121462e-05	ci right 1.158046e-04	k: 278	n:2700000
KRTAP1-5   2700000 perm   3671 sec   (735 perm/sec)   p_kst 1.029630e-04   p_cons 9.791030e-01   p_joint 5.388889e-04

Joint ci ratio: 1.025986e-01	ci left: 5.107496e-04	ci right 5.663414e-04	k: 1458	n:2710000
Cons ci ratio: 3.478705e-04	ci left: 9.789334e-01	ci right 9.792744e-01	k: 2653373	n:2710000
KS ci ratio: 2.342527e-01	ci left: 9.122537e-05	ci right 1.157679e-04	k: 279	n:2710000
KRTAP1-5   2710000 perm   3697 sec   (733 perm/sec)   p_kst 1.029520e-04   p_cons 9.791044e-01   p_joint 5.380074e-04

Joint ci ratio: 1.023883e-01	ci left: 5.110212e-04	ci right 5.665217e-04	k: 1464	n:2720000
Cons ci ratio: 3.471931e-04	ci left: 9.789382e-01	ci right 9.792785e-01	k: 2663176	n:2720000
KS ci ratio: 2.342527e-01	ci left: 9.088998e-05	ci right 1.153423e-04	k: 279	n:2720000
KRTAP1-5   2720000 perm   3722 sec   (731 perm/sec)   p_kst 1.025735e-04   p_cons 9.791088e-01   p_joint 5.382353e-04

Joint ci ratio: 1.021098e-01	ci left: 5.120048e-04	ci right 5.674518e-04	k: 1472	n:2730000
Cons ci ratio: 3.465041e-04	ci left: 9.789447e-01	ci right 9.792843e-01	k: 2672984	n:2730000
KS ci ratio: 2.330077e-01	ci left: 9.159164e-05	ci right 1.160829e-04	k: 282	n:2730000
KRTAP1-5   2730000 perm   3747 sec   (729 perm/sec)   p_kst 1.032967e-04   p_cons 9.791150e-01   p_joint 5.391941e-04

Joint ci ratio: 1.018680e-01	ci left: 5.126258e-04	ci right 5.680007e-04	k: 1479	n:2740000
Cons ci ratio: 3.458686e-04	ci left: 9.789453e-01	ci right 9.792843e-01	k: 2682776	n:2740000
KS ci ratio: 2.325971e-01	ci left: 9.160104e-05	ci right 1.160455e-04	k: 283	n:2740000
KRTAP1-5   2740000 perm   3773 sec   (726 perm/sec)   p_kst 1.032847e-04   p_cons 9.791153e-01   p_joint 5.397810e-04

Joint ci ratio: 1.021447e-01	ci left: 5.079267e-04	ci right 5.629521e-04	k: 1471	n:2750000
Cons ci ratio: 3.452519e-04	ci left: 9.789441e-01	ci right 9.792825e-01	k: 2692563	n:2750000
KS ci ratio: 2.325972e-01	ci left: 9.126794e-05	ci right 1.156235e-04	k: 283	n:2750000
KRTAP1-5   2750000 perm   3798 sec   (724 perm/sec)   p_kst 1.029091e-04   p_cons 9.791138e-01   p_joint 5.349091e-04

Joint ci ratio: 1.019717e-01	ci left: 5.078518e-04	ci right 5.627702e-04	k: 1476	n:2760000
Cons ci ratio: 3.446965e-04	ci left: 9.789360e-01	ci right 9.792739e-01	k: 2702331	n:2760000
KS ci ratio: 2.325972e-01	ci left: 9.093726e-05	ci right 1.152046e-04	k: 283	n:2760000
KRTAP1-5   2760000 perm   3824 sec   (722 perm/sec)   p_kst 1.025362e-04   p_cons 9.791054e-01   p_joint 5.347826e-04

Joint ci ratio: 1.018339e-01	ci left: 5.074256e-04	ci right 5.622194e-04	k: 1480	n:2770000
Cons ci ratio: 3.440679e-04	ci left: 9.789370e-01	ci right 9.792743e-01	k: 2712124	n:2770000
KS ci ratio: 2.325972e-01	ci left: 9.060897e-05	ci right 1.147887e-04	k: 283	n:2770000
KRTAP1-5   2770000 perm   3850 sec   (720 perm/sec)   p_kst 1.021661e-04   p_cons 9.791061e-01   p_joint 5.342960e-04

Joint ci ratio: 1.020064e-01	ci left: 5.038476e-04	ci right 5.583527e-04	k: 1475	n:2780000
Cons ci ratio: 3.434788e-04	ci left: 9.789337e-01	ci right 9.792703e-01	k: 2721905	n:2780000
KS ci ratio: 2.325973e-01	ci left: 9.028303e-05	ci right 1.143758e-04	k: 283	n:2780000
KRTAP1-5   2780000 perm   3875 sec   (717 perm/sec)   p_kst 1.017986e-04   p_cons 9.791025e-01   p_joint 5.305755e-04

Joint ci ratio: 1.017997e-01	ci left: 5.041374e-04	ci right 5.585567e-04	k: 1481	n:2790000
Cons ci ratio: 3.428057e-04	ci left: 9.789408e-01	ci right 9.792768e-01	k: 2731715	n:2790000
KS ci ratio: 2.325973e-01	ci left: 8.995944e-05	ci right 1.139658e-04	k: 283	n:2790000
KRTAP1-5   2790000 perm   3900 sec   (715 perm/sec)   p_kst 1.014337e-04   p_cons 9.791093e-01   p_joint 5.308244e-04

Joint ci ratio: 1.017311e-01	ci left: 5.030330e-04	ci right 5.572944e-04	k: 1483	n:2800000
Cons ci ratio: 3.421395e-04	ci left: 9.789475e-01	ci right 9.792829e-01	k: 2741524	n:2800000
KS ci ratio: 2.325974e-01	ci left: 8.963815e-05	ci right 1.135588e-04	k: 283	n:2800000
KRTAP1-5   2800000 perm   3927 sec   (713 perm/sec)   p_kst 1.010714e-04   p_cons 9.791157e-01   p_joint 5.296429e-04

Joint ci ratio: 1.012883e-01	ci left: 5.057518e-04	ci right 5.600548e-04	k: 1496	n:2810000
Cons ci ratio: 3.414950e-04	ci left: 9.789521e-01	ci right 9.792868e-01	k: 2751327	n:2810000
KS ci ratio: 2.313784e-01	ci left: 9.032473e-05	ci right 1.142842e-04	k: 286	n:2810000
KRTAP1-5   2810000 perm   3952 sec   (711 perm/sec)   p_kst 1.017794e-04   p_cons 9.791199e-01   p_joint 5.323843e-04

Joint ci ratio: 1.010859e-01	ci left: 5.060321e-04	ci right 5.602503e-04	k: 1502	n:2820000
Cons ci ratio: 3.408659e-04	ci left: 9.789552e-01	ci right 9.792893e-01	k: 2761126	n:2820000
KS ci ratio: 2.305764e-01	ci left: 9.067261e-05	ci right 1.146291e-04	k: 288	n:2820000
KRTAP1-5   2820000 perm   3979 sec   (709 perm/sec)   p_kst 1.021277e-04   p_cons 9.791227e-01   p_joint 5.326241e-04

Joint ci ratio: 1.010524e-01	ci left: 5.045884e-04	ci right 5.586329e-04	k: 1503	n:2830000
Cons ci ratio: 3.401932e-04	ci left: 9.789639e-01	ci right 9.792973e-01	k: 2770941	n:2830000
KS ci ratio: 2.305764e-01	ci left: 9.035221e-05	ci right 1.142241e-04	k: 288	n:2830000
KRTAP1-5   2830000 perm   4005 sec   (707 perm/sec)   p_kst 1.017668e-04   p_cons 9.791311e-01   p_joint 5.310954e-04

Joint ci ratio: 1.007513e-01	ci left: 5.059008e-04	ci right 5.599148e-04	k: 1512	n:2840000
Cons ci ratio: 3.395624e-04	ci left: 9.789680e-01	ci right 9.793008e-01	k: 2780743	n:2840000
KS ci ratio: 2.301785e-01	ci left: 9.036586e-05	ci right 1.141943e-04	k: 289	n:2840000
KRTAP1-5   2840000 perm   4031 sec   (705 perm/sec)   p_kst 1.017606e-04   p_cons 9.791349e-01   p_joint 5.323944e-04

Joint ci ratio: 1.006184e-01	ci left: 5.054938e-04	ci right 5.593891e-04	k: 1516	n:2850000
Cons ci ratio: 3.389527e-04	ci left: 9.789699e-01	ci right 9.793021e-01	k: 2790539	n:2850000
KS ci ratio: 2.297827e-01	ci left: 9.037945e-05	ci right 1.141647e-04	k: 290	n:2850000
KRTAP1-5   2850000 perm   4058 sec   (702 perm/sec)   p_kst 1.017544e-04   p_cons 9.791365e-01   p_joint 5.319298e-04

Joint ci ratio: 1.005191e-01	ci left: 5.047489e-04	ci right 5.585085e-04	k: 1519	n:2860000
Cons ci ratio: 3.383664e-04	ci left: 9.789694e-01	ci right 9.793010e-01	k: 2800328	n:2860000
KS ci ratio: 2.297827e-01	ci left: 9.006344e-05	ci right 1.137655e-04	k: 290	n:2860000
KRTAP1-5   2860000 perm   4085 sec   (700 perm/sec)   p_kst 1.013986e-04   p_cons 9.791357e-01   p_joint 5.311189e-04

Joint ci ratio: 1.003872e-01	ci left: 5.043489e-04	ci right 5.579912e-04	k: 1523	n:2870000
Cons ci ratio: 3.377659e-04	ci left: 9.789709e-01	ci right 9.793020e-01	k: 2810123	n:2870000
KS ci ratio: 2.289971e-01	ci left: 9.040645e-05	ci right 1.141059e-04	k: 292	n:2870000
KRTAP1-5   2870000 perm   4111 sec   (698 perm/sec)   p_kst 1.017422e-04   p_cons 9.791369e-01   p_joint 5.306620e-04

Joint ci ratio: 1.013228e-01	ci left: 4.931206e-04	ci right 5.460865e-04	k: 1495	n:2880000
Cons ci ratio: 3.370912e-04	ci left: 9.789819e-01	ci right 9.793123e-01	k: 2819945	n:2880000
KS ci ratio: 2.289972e-01	ci left: 9.009254e-05	ci right 1.137097e-04	k: 292	n:2880000
KRTAP1-5   2880000 perm   4138 sec   (696 perm/sec)   p_kst 1.013889e-04   p_cons 9.791476e-01   p_joint 5.190972e-04

Joint ci ratio: 1.011203e-01	ci left: 4.934379e-04	ci right 5.463256e-04	k: 1501	n:2890000
Cons ci ratio: 3.365288e-04	ci left: 9.789796e-01	ci right 9.793094e-01	k: 2829729	n:2890000
KS ci ratio: 2.289972e-01	ci left: 8.978080e-05	ci right 1.133163e-04	k: 292	n:2890000
KRTAP1-5   2890000 perm   4164 sec   (694 perm/sec)   p_kst 1.010381e-04   p_cons 9.791450e-01   p_joint 5.193772e-04

Joint ci ratio: 1.009524e-01	ci left: 4.934169e-04	ci right 5.462094e-04	k: 1506	n:2900000
Cons ci ratio: 3.359408e-04	ci left: 9.789807e-01	ci right 9.793100e-01	k: 2839523	n:2900000
KS ci ratio: 2.289972e-01	ci left: 8.947121e-05	ci right 1.129255e-04	k: 292	n:2900000
KRTAP1-5   2900000 perm   4190 sec   (692 perm/sec)   p_kst 1.006897e-04   p_cons 9.791459e-01   p_joint 5.193103e-04

Joint ci ratio: 1.006854e-01	ci left: 4.944012e-04	ci right 5.471508e-04	k: 1514	n:2910000
Cons ci ratio: 3.353305e-04	ci left: 9.789850e-01	ci right 9.793137e-01	k: 2849326	n:2910000
KS ci ratio: 2.286075e-01	ci left: 8.948770e-05	ci right 1.129008e-04	k: 293	n:2910000
KRTAP1-5   2910000 perm   4217 sec   (690 perm/sec)   p_kst 1.006873e-04   p_cons 9.791498e-01   p_joint 5.202749e-04

Joint ci ratio: 1.004536e-01	ci left: 4.950450e-04	ci right 5.477346e-04	k: 1521	n:2920000
Cons ci ratio: 3.347993e-04	ci left: 9.789800e-01	ci right 9.793081e-01	k: 2859102	n:2920000
KS ci ratio: 2.270679e-01	ci left: 9.047292e-05	ci right 1.139620e-04	k: 297	n:2920000
KRTAP1-5   2920000 perm   4244 sec   (688 perm/sec)   p_kst 1.017123e-04   p_cons 9.791445e-01   p_joint 5.208904e-04

Joint ci ratio: 1.002890e-01	ci left: 4.950191e-04	ci right 5.476145e-04	k: 1526	n:2930000
Cons ci ratio: 3.342399e-04	ci left: 9.789787e-01	ci right 9.793063e-01	k: 2868889	n:2930000
KS ci ratio: 2.270679e-01	ci left: 9.016414e-05	ci right 1.135731e-04	k: 297	n:2930000
KRTAP1-5   2930000 perm   4270 sec   (686 perm/sec)   p_kst 1.013652e-04   p_cons 9.791430e-01   p_joint 5.208191e-04

Joint ci ratio: 1.000925e-01	ci left: 4.953250e-04	ci right 5.478438e-04	k: 1532	n:2940000
Cons ci ratio: 3.336639e-04	ci left: 9.789799e-01	ci right 9.793069e-01	k: 2878683	n:2940000
KS ci ratio: 2.270680e-01	ci left: 8.985745e-05	ci right 1.131868e-04	k: 297	n:2940000
KRTAP1-5   2940000 perm   4298 sec   (684 perm/sec)   p_kst 1.010204e-04   p_cons 9.791439e-01   p_joint 5.210884e-04

Joint ci ratio: 9.992970e-02	ci left: 4.952985e-04	ci right 5.477240e-04	k: 1537	n:2950000
Cons ci ratio: 3.331073e-04	ci left: 9.789790e-01	ci right 9.793055e-01	k: 2888471	n:2950000
KS ci ratio: 2.270680e-01	ci left: 8.955285e-05	ci right 1.128031e-04	k: 297	n:2950000
KRTAP1-5   2950000 perm   4325 sec   (682 perm/sec)   p_kst 1.006780e-04   p_cons 9.791427e-01   p_joint 5.210169e-04

Joint ci ratio: 1.004870e-01	ci left: 4.880258e-04	ci right 5.399865e-04	k: 1520	n:2960000
Cons ci ratio: 3.325454e-04	ci left: 9.789791e-01	ci right 9.793051e-01	k: 2898262	n:2960000
KS ci ratio: 2.263098e-01	ci left: 8.988762e-05	ci right 1.131360e-04	k: 299	n:2960000
KRTAP1-5   2960000 perm   4352 sec   (680 perm/sec)   p_kst 1.010135e-04   p_cons 9.791426e-01   p_joint 5.135135e-04

Joint ci ratio: 1.003881e-01	ci left: 4.873673e-04	ci right 5.392039e-04	k: 1523	n:2970000
Cons ci ratio: 3.319643e-04	ci left: 9.789820e-01	ci right 9.793073e-01	k: 2908061	n:2970000
KS ci ratio: 2.259336e-01	ci left: 8.990260e-05	ci right 1.131108e-04	k: 300	n:2970000
KRTAP1-5   2970000 perm   4380 sec   (678 perm/sec)   p_kst 1.010101e-04   p_cons 9.791451e-01   p_joint 5.127946e-04

Joint ci ratio: 1.003223e-01	ci left: 4.863861e-04	ci right 5.380825e-04	k: 1525	n:2980000
Cons ci ratio: 3.314162e-04	ci left: 9.789811e-01	ci right 9.793059e-01	k: 2917849	n:2980000
KS ci ratio: 2.251866e-01	ci left: 9.023413e-05	ci right 1.134402e-04	k: 302	n:2980000
KRTAP1-5   2980000 perm   4407 sec   (676 perm/sec)   p_kst 1.013423e-04   p_cons 9.791440e-01   p_joint 5.117450e-04

Joint ci ratio: 1.002239e-01	ci left: 4.857376e-04	ci right 5.373114e-04	k: 1528	n:2990000
Cons ci ratio: 3.307923e-04	ci left: 9.789899e-01	ci right 9.793142e-01	k: 2927666	n:2990000
KS ci ratio: 2.251867e-01	ci left: 8.993235e-05	ci right 1.130608e-04	k: 302	n:2990000
KRTAP1-5   2990000 perm   4435 sec   (674 perm/sec)   p_kst 1.010033e-04   p_cons 9.791525e-01   p_joint 5.110368e-04

Joint ci ratio: 1.000604e-01	ci left: 4.857434e-04	ci right 5.372287e-04	k: 1533	n:3000000
Cons ci ratio: 3.301529e-04	ci left: 9.790011e-01	ci right 9.793247e-01	k: 2937490	n:3000000
KS ci ratio: 2.248160e-01	ci left: 8.994712e-05	ci right 1.130361e-04	k: 303	n:3000000
KRTAP1-5   3000000 perm   4462 sec   (672 perm/sec)   p_kst 1.010000e-04   p_cons 9.791633e-01   p_joint 5.110000e-04

Joint ci ratio: 9.973577e-02	ci left: 4.873689e-04	ci right 5.388491e-04	k: 1543	n:3010000
Cons ci ratio: 3.296326e-04	ci left: 9.789978e-01	ci right 9.793209e-01	k: 2947271	n:3010000
KS ci ratio: 2.240801e-01	ci left: 9.027539e-05	ci right 1.133623e-04	k: 305	n:3010000
KRTAP1-5   3010000 perm   4489 sec   (670 perm/sec)   p_kst 1.013289e-04   p_cons 9.791598e-01   p_joint 5.126246e-04

Joint ci ratio: 9.957467e-02	ci left: 4.873694e-04	ci right 5.387617e-04	k: 1548	n:3020000
Cons ci ratio: 3.290853e-04	ci left: 9.789982e-01	ci right 9.793207e-01	k: 2957063	n:3020000
KS ci ratio: 2.237148e-01	ci left: 9.028902e-05	ci right 1.133366e-04	k: 306	n:3020000
KRTAP1-5   3020000 perm   4517 sec   (669 perm/sec)   p_kst 1.013245e-04   p_cons 9.791599e-01   p_joint 5.125828e-04

Joint ci ratio: 9.944637e-02	ci left: 4.870482e-04	ci right 5.383366e-04	k: 1552	n:3030000
Cons ci ratio: 3.285035e-04	ci left: 9.790032e-01	ci right 9.793252e-01	k: 2966869	n:3030000
KS ci ratio: 2.237148e-01	ci left: 8.999104e-05	ci right 1.129625e-04	k: 306	n:3030000
KRTAP1-5   3030000 perm   4546 sec   (667 perm/sec)   p_kst 1.009901e-04   p_cons 9.791647e-01   p_joint 5.122112e-04

Joint ci ratio: 1.019742e-01	ci left: 4.610754e-04	ci right 5.109368e-04	k: 1476	n:3040000
Cons ci ratio: 3.279407e-04	ci left: 9.790063e-01	ci right 9.793277e-01	k: 2976669	n:3040000
KS ci ratio: 2.233514e-01	ci left: 9.000554e-05	ci right 1.129383e-04	k: 307	n:3040000
KRTAP1-5   3040000 perm   4574 sec   (665 perm/sec)   p_kst 1.009868e-04   p_cons 9.791674e-01   p_joint 4.855263e-04

Joint ci ratio: 1.018708e-01	ci left: 4.605222e-04	ci right 5.102702e-04	k: 1479	n:3050000
Cons ci ratio: 3.274202e-04	ci left: 9.790043e-01	ci right 9.793252e-01	k: 2986454	n:3050000
KS ci ratio: 2.226297e-01	ci left: 9.032956e-05	ci right 1.132603e-04	k: 309	n:3050000
KRTAP1-5   3050000 perm   4601 sec   (663 perm/sec)   p_kst 1.013115e-04   p_cons 9.791652e-01   p_joint 4.849180e-04

Joint ci ratio: 1.016307e-01	ci left: 4.612466e-04	ci right 5.109485e-04	k: 1486	n:3060000
Cons ci ratio: 3.268053e-04	ci left: 9.790146e-01	ci right 9.793349e-01	k: 2996276	n:3060000
KS ci ratio: 2.215601e-01	ci left: 9.096022e-05	ci right 1.139250e-04	k: 312	n:3060000
KRTAP1-5   3060000 perm   4630 sec   (661 perm/sec)   p_kst 1.019608e-04   p_cons 9.791752e-01   p_joint 4.856209e-04

Joint ci ratio: 1.015625e-01	ci left: 4.603791e-04	ci right 5.099522e-04	k: 1488	n:3070000
Cons ci ratio: 3.262798e-04	ci left: 9.790139e-01	ci right 9.793337e-01	k: 3006065	n:3070000
KS ci ratio: 2.212070e-01	ci left: 9.097161e-05	ci right 1.138977e-04	k: 313	n:3070000
KRTAP1-5   3070000 perm   4658 sec   (659 perm/sec)   p_kst 1.019544e-04   p_cons 9.791743e-01   p_joint 4.846906e-04

Joint ci ratio: 1.014264e-01	ci left: 4.601500e-04	ci right 5.096281e-04	k: 1492	n:3080000
Cons ci ratio: 3.258242e-04	ci left: 9.790048e-01	ci right 9.793242e-01	k: 3015828	n:3080000
KS ci ratio: 2.205059e-01	ci left: 9.128968e-05	ci right 1.142131e-04	k: 315	n:3080000
KRTAP1-5   3080000 perm   4686 sec   (657 perm/sec)   p_kst 1.022727e-04   p_cons 9.791649e-01   p_joint 4.844156e-04

Joint ci ratio: 1.012231e-01	ci left: 4.605534e-04	ci right 5.099698e-04	k: 1498	n:3090000
Cons ci ratio: 3.253111e-04	ci left: 9.790032e-01	ci right 9.793221e-01	k: 3025614	n:3090000
KS ci ratio: 2.201578e-01	ci left: 9.130001e-05	ci right 1.141849e-04	k: 316	n:3090000
KRTAP1-5   3090000 perm   4715 sec   (655 perm/sec)   p_kst 1.022654e-04   p_cons 9.791631e-01   p_joint 4.847896e-04

Joint ci ratio: 1.020092e-01	ci left: 4.518369e-04	ci right 5.007170e-04	k: 1475	n:3100000
Cons ci ratio: 3.248030e-04	ci left: 9.790013e-01	ci right 9.793197e-01	k: 3035399	n:3100000
KS ci ratio: 2.198114e-01	ci left: 9.131030e-05	ci right 1.141569e-04	k: 317	n:3100000
KRTAP1-5   3100000 perm   4743 sec   (654 perm/sec)   p_kst 1.022581e-04   p_cons 9.791610e-01   p_joint 4.758065e-04

Joint ci ratio: 1.018713e-01	ci left: 4.516374e-04	ci right 5.004259e-04	k: 1479	n:3110000
Cons ci ratio: 3.242411e-04	ci left: 9.790066e-01	ci right 9.793244e-01	k: 3045206	n:3110000
KS ci ratio: 2.194666e-01	ci left: 9.132055e-05	ci right 1.141290e-04	k: 318	n:3110000
KRTAP1-5   3110000 perm   4772 sec   (652 perm/sec)   p_kst 1.022508e-04   p_cons 9.791659e-01   p_joint 4.755627e-04

Joint ci ratio: 1.018026e-01	ci left: 4.508145e-04	ci right 4.994793e-04	k: 1481	n:3120000
Cons ci ratio: 3.236973e-04	ci left: 9.790098e-01	ci right 9.793271e-01	k: 3055007	n:3120000
KS ci ratio: 2.194666e-01	ci left: 9.102786e-05	ci right 1.137632e-04	k: 318	n:3120000
KRTAP1-5   3120000 perm   4801 sec   (650 perm/sec)   p_kst 1.019231e-04   p_cons 9.791689e-01   p_joint 4.746795e-04

Joint ci ratio: 1.015630e-01	ci left: 4.515538e-04	ci right 5.001768e-04	k: 1488	n:3130000
Cons ci ratio: 3.231536e-04	ci left: 9.790134e-01	ci right 9.793301e-01	k: 3064809	n:3130000
KS ci ratio: 2.187818e-01	ci left: 9.134094e-05	ci right 1.140738e-04	k: 320	n:3130000
KRTAP1-5   3130000 perm   4830 sec   (648 perm/sec)   p_kst 1.022364e-04   p_cons 9.791722e-01   p_joint 4.753994e-04

Joint ci ratio: 1.012573e-01	ci left: 4.529093e-04	ci right 5.015228e-04	k: 1497	n:3140000
Cons ci ratio: 3.226909e-04	ci left: 9.790070e-01	ci right 9.793233e-01	k: 3074580	n:3140000
KS ci ratio: 2.177665e-01	ci left: 9.195324e-05	ci right 1.147180e-04	k: 323	n:3140000
KRTAP1-5   3140000 perm   4858 sec   (646 perm/sec)   p_kst 1.028662e-04   p_cons 9.791656e-01   p_joint 4.767516e-04

Joint ci ratio: 1.011561e-01	ci left: 4.523997e-04	ci right 5.009072e-04	k: 1500	n:3150000
Cons ci ratio: 3.221222e-04	ci left: 9.790144e-01	ci right 9.793301e-01	k: 3084394	n:3150000
KS ci ratio: 2.174312e-01	ci left: 9.196148e-05	ci right 1.146886e-04	k: 324	n:3150000
KRTAP1-5   3150000 perm   4888 sec   (645 perm/sec)   p_kst 1.028571e-04   p_cons 9.791727e-01   p_joint 4.761905e-04

Joint ci ratio: 1.008541e-01	ci left: 4.537443e-04	ci right 5.022420e-04	k: 1509	n:3160000
Cons ci ratio: 3.216389e-04	ci left: 9.790112e-01	ci right 9.793265e-01	k: 3094175	n:3160000
KS ci ratio: 2.174313e-01	ci left: 9.167046e-05	ci right 1.143256e-04	k: 324	n:3160000
KRTAP1-5   3160000 perm   4917 sec   (643 perm/sec)   p_kst 1.025316e-04   p_cons 9.791693e-01   p_joint 4.775316e-04

Joint ci ratio: 1.006876e-01	ci left: 4.538504e-04	ci right 5.022747e-04	k: 1514	n:3170000
Cons ci ratio: 3.211552e-04	ci left: 9.790084e-01	ci right 9.793232e-01	k: 3103957	n:3170000
KS ci ratio: 2.167653e-01	ci left: 9.197790e-05	ci right 1.146302e-04	k: 326	n:3170000
KRTAP1-5   3170000 perm   4946 sec   (641 perm/sec)   p_kst 1.028391e-04   p_cons 9.791662e-01   p_joint 4.776025e-04

Joint ci ratio: 1.005881e-01	ci left: 4.533429e-04	ci right 5.016623e-04	k: 1517	n:3180000
Cons ci ratio: 3.206441e-04	ci left: 9.790094e-01	ci right 9.793237e-01	k: 3113751	n:3180000
KS ci ratio: 2.164346e-01	ci left: 9.198606e-05	ci right 1.146012e-04	k: 327	n:3180000
KRTAP1-5   3180000 perm   4975 sec   (639 perm/sec)   p_kst 1.028302e-04   p_cons 9.791670e-01   p_joint 4.770440e-04

Joint ci ratio: 1.003898e-01	ci left: 4.537554e-04	ci right 5.020179e-04	k: 1523	n:3190000
Cons ci ratio: 3.201821e-04	ci left: 9.790044e-01	ci right 9.793182e-01	k: 3123526	n:3190000
KS ci ratio: 2.164346e-01	ci left: 9.169770e-05	ci right 1.142419e-04	k: 327	n:3190000
KRTAP1-5   3190000 perm   5005 sec   (637 perm/sec)   p_kst 1.025078e-04   p_cons 9.791618e-01   p_joint 4.774295e-04

Joint ci ratio: 1.000947e-01	ci left: 4.550794e-04	ci right 5.033320e-04	k: 1532	n:3200000
Cons ci ratio: 3.196683e-04	ci left: 9.790063e-01	ci right 9.793197e-01	k: 3133323	n:3200000
KS ci ratio: 2.164347e-01	ci left: 9.141115e-05	ci right 1.138849e-04	k: 327	n:3200000
KRTAP1-5   3200000 perm   5034 sec   (636 perm/sec)   p_kst 1.021875e-04   p_cons 9.791634e-01   p_joint 4.787500e-04

Joint ci ratio: 9.996433e-02	ci left: 4.548766e-04	ci right 5.030413e-04	k: 1536	n:3210000
Cons ci ratio: 3.192470e-04	ci left: 9.789967e-01	ci right 9.793096e-01	k: 3143083	n:3210000
KS ci ratio: 2.164347e-01	ci left: 9.112638e-05	ci right 1.135302e-04	k: 327	n:3210000
KRTAP1-5   3210000 perm   5063 sec   (634 perm/sec)   p_kst 1.018692e-04   p_cons 9.791536e-01   p_joint 4.785047e-04

Joint ci ratio: 9.976977e-02	ci left: 4.552808e-04	ci right 5.033889e-04	k: 1542	n:3220000
Cons ci ratio: 3.188225e-04	ci left: 9.789877e-01	ci right 9.793002e-01	k: 3152845	n:3220000
KS ci ratio: 2.164347e-01	ci left: 9.084337e-05	ci right 1.131776e-04	k: 327	n:3220000
KRTAP1-5   3220000 perm   5093 sec   (632 perm/sec)   p_kst 1.015528e-04   p_cons 9.791444e-01   p_joint 4.788820e-04

Joint ci ratio: 9.957633e-02	ci left: 4.556825e-04	ci right 5.037343e-04	k: 1548	n:3230000
Cons ci ratio: 3.183055e-04	ci left: 9.789910e-01	ci right 9.793029e-01	k: 3162646	n:3230000
KS ci ratio: 2.157778e-01	ci left: 9.114781e-05	ci right 1.134798e-04	k: 329	n:3230000
KRTAP1-5   3230000 perm   5123 sec   (631 perm/sec)   p_kst 1.018576e-04   p_cons 9.791474e-01   p_joint 4.792570e-04

Joint ci ratio: 9.944803e-02	ci left: 4.554799e-04	ci right 5.034448e-04	k: 1552	n:3240000
Cons ci ratio: 3.178439e-04	ci left: 9.789873e-01	ci right 9.792988e-01	k: 3172425	n:3240000
KS ci ratio: 2.148036e-01	ci left: 9.174250e-05	ci right 1.141054e-04	k: 332	n:3240000
KRTAP1-5   3240000 perm   5152 sec   (629 perm/sec)   p_kst 1.024691e-04   p_cons 9.791435e-01   p_joint 4.790123e-04

Joint ci ratio: 9.928832e-02	ci left: 4.555787e-04	ci right 5.034725e-04	k: 1557	n:3250000
Cons ci ratio: 3.173842e-04	ci left: 9.789837e-01	ci right 9.792948e-01	k: 3182204	n:3250000
KS ci ratio: 2.144818e-01	ci left: 9.175136e-05	ci right 1.140785e-04	k: 333	n:3250000
KRTAP1-5   3250000 perm   5182 sec   (627 perm/sec)   p_kst 1.024615e-04   p_cons 9.791397e-01   p_joint 4.790769e-04

Joint ci ratio: 1.000624e-01	ci left: 4.470027e-04	ci right 4.943828e-04	k: 1533	n:3260000
Cons ci ratio: 3.168956e-04	ci left: 9.789842e-01	ci right 9.792947e-01	k: 3191996	n:3260000
KS ci ratio: 2.144818e-01	ci left: 9.146992e-05	ci right 1.137285e-04	k: 333	n:3260000
KRTAP1-5   3260000 perm   5211 sec   (626 perm/sec)   p_kst 1.021472e-04   p_cons 9.791399e-01   p_joint 4.702454e-04

Joint ci ratio: 9.993225e-02	ci left: 4.468283e-04	ci right 4.941247e-04	k: 1537	n:3270000
Cons ci ratio: 3.163832e-04	ci left: 9.789880e-01	ci right 9.792980e-01	k: 3201799	n:3270000
KS ci ratio: 2.144819e-01	ci left: 9.119019e-05	ci right 1.133808e-04	k: 333	n:3270000
KRTAP1-5   3270000 perm   5240 sec   (624 perm/sec)   p_kst 1.018349e-04   p_cons 9.791434e-01   p_joint 4.700306e-04

Joint ci ratio: 9.977020e-02	ci left: 4.469524e-04	ci right 4.941807e-04	k: 1542	n:3280000
Cons ci ratio: 3.158709e-04	ci left: 9.789920e-01	ci right 9.793016e-01	k: 3211603	n:3280000
KS ci ratio: 2.138425e-01	ci left: 9.148923e-05	ci right 1.136775e-04	k: 335	n:3280000
KRTAP1-5   3280000 perm   5269 sec   (622 perm/sec)   p_kst 1.021341e-04   p_cons 9.791473e-01   p_joint 4.701220e-04

Joint ci ratio: 9.954463e-02	ci left: 4.476685e-04	ci right 4.948593e-04	k: 1549	n:3290000
Cons ci ratio: 3.153681e-04	ci left: 9.789952e-01	ci right 9.793043e-01	k: 3221404	n:3290000
KS ci ratio: 2.135250e-01	ci left: 9.149883e-05	ci right 1.136522e-04	k: 336	n:3290000
KRTAP1-5   3290000 perm   5299 sec   (621 perm/sec)   p_kst 1.021277e-04   p_cons 9.791502e-01   p_joint 4.708207e-04

Joint ci ratio: 1.013262e-01	ci left: 4.303591e-04	ci right 4.765854e-04	k: 1495	n:3300000
Cons ci ratio: 3.148841e-04	ci left: 9.789962e-01	ci right 9.793048e-01	k: 3231198	n:3300000
KS ci ratio: 2.132089e-01	ci left: 9.150840e-05	ci right 1.136270e-04	k: 337	n:3300000
KRTAP1-5   3300000 perm   5329 sec   (619 perm/sec)   p_kst 1.021212e-04   p_cons 9.791509e-01   p_joint 4.530303e-04

Joint ci ratio: 1.011910e-01	ci left: 4.302368e-04	ci right 4.763847e-04	k: 1499	n:3310000
Cons ci ratio: 3.144186e-04	ci left: 9.789950e-01	ci right 9.793032e-01	k: 3240985	n:3310000
KS ci ratio: 2.128942e-01	ci left: 9.151793e-05	ci right 1.136019e-04	k: 338	n:3310000
KRTAP1-5   3310000 perm   5359 sec   (618 perm/sec)   p_kst 1.021148e-04   p_cons 9.791495e-01   p_joint 4.528701e-04

Joint ci ratio: 1.009557e-01	ci left: 4.309960e-04	ci right 4.771115e-04	k: 1506	n:3320000
Cons ci ratio: 3.139227e-04	ci left: 9.789982e-01	ci right 9.793058e-01	k: 3250786	n:3320000
KS ci ratio: 2.128943e-01	ci left: 9.124228e-05	ci right 1.132597e-04	k: 338	n:3320000
KRTAP1-5   3320000 perm   5389 sec   (616 perm/sec)   p_kst 1.018072e-04   p_cons 9.791524e-01   p_joint 4.536145e-04

Joint ci ratio: 1.008220e-01	ci left: 4.308726e-04	ci right 4.769102e-04	k: 1510	n:3330000
Cons ci ratio: 3.134199e-04	ci left: 9.790024e-01	ci right 9.793096e-01	k: 3260591	n:3330000
KS ci ratio: 2.125810e-01	ci left: 9.125258e-05	ci right 1.132359e-04	k: 339	n:3330000
KRTAP1-5   3330000 perm   5420 sec   (614 perm/sec)   p_kst 1.018018e-04   p_cons 9.791565e-01   p_joint 4.534535e-04

Joint ci ratio: 1.006556e-01	ci left: 4.310419e-04	ci right 4.770170e-04	k: 1515	n:3340000
Cons ci ratio: 3.129080e-04	ci left: 9.790082e-01	ci right 9.793149e-01	k: 3270401	n:3340000
KS ci ratio: 2.116492e-01	ci left: 9.182986e-05	ci right 1.138427e-04	k: 342	n:3340000
KRTAP1-5   3340000 perm   5449 sec   (613 perm/sec)   p_kst 1.023952e-04   p_cons 9.791620e-01   p_joint 4.535928e-04

Joint ci ratio: 1.006556e-01	ci left: 4.297552e-04	ci right 4.755931e-04	k: 1515	n:3350000
Cons ci ratio: 3.124055e-04	ci left: 9.790131e-01	ci right 9.793192e-01	k: 3280208	n:3350000
KS ci ratio: 2.116492e-01	ci left: 9.155574e-05	ci right 1.135028e-04	k: 342	n:3350000
KRTAP1-5   3350000 perm   5480 sec   (611 perm/sec)   p_kst 1.020896e-04   p_cons 9.791666e-01   p_joint 4.522388e-04

Joint ci ratio: 1.004570e-01	ci left: 4.302169e-04	ci right 4.760083e-04	k: 1521	n:3360000
Cons ci ratio: 3.119144e-04	ci left: 9.790167e-01	ci right 9.793224e-01	k: 3290011	n:3360000
KS ci ratio: 2.110348e-01	ci left: 9.184699e-05	ci right 1.137917e-04	k: 344	n:3360000
KRTAP1-5   3360000 perm   5510 sec   (610 perm/sec)   p_kst 1.023810e-04   p_cons 9.791699e-01   p_joint 4.526786e-04

Joint ci ratio: 1.005563e-01	ci left: 4.280725e-04	ci right 4.736832e-04	k: 1518	n:3370000
Cons ci ratio: 3.114348e-04	ci left: 9.790191e-01	ci right 9.793243e-01	k: 3299810	n:3370000
KS ci ratio: 2.110349e-01	ci left: 9.157444e-05	ci right 1.134541e-04	k: 344	n:3370000
KRTAP1-5   3370000 perm   5542 sec   (608 perm/sec)   p_kst 1.020772e-04   p_cons 9.791721e-01   p_joint 4.504451e-04

Joint ci ratio: 1.004572e-01	ci left: 4.276713e-04	ci right 4.731917e-04	k: 1521	n:3380000
Cons ci ratio: 3.109528e-04	ci left: 9.790221e-01	ci right 9.793268e-01	k: 3309611	n:3380000
KS ci ratio: 2.110349e-01	ci left: 9.130351e-05	ci right 1.131184e-04	k: 344	n:3380000
KRTAP1-5   3380000 perm   5574 sec   (606 perm/sec)   p_kst 1.017751e-04   p_cons 9.791749e-01   p_joint 4.500000e-04

Joint ci ratio: 1.004572e-01	ci left: 4.264097e-04	ci right 4.717958e-04	k: 1521	n:3390000
Cons ci ratio: 3.105157e-04	ci left: 9.790194e-01	ci right 9.793237e-01	k: 3319393	n:3390000
KS ci ratio: 2.110349e-01	ci left: 9.103418e-05	ci right 1.127847e-04	k: 344	n:3390000
KRTAP1-5   3390000 perm   5604 sec   (605 perm/sec)   p_kst 1.014749e-04   p_cons 9.791720e-01   p_joint 4.486726e-04

Joint ci ratio: 1.003255e-01	ci left: 4.263025e-04	ci right 4.716142e-04	k: 1525	n:3400000
Cons ci ratio: 3.100872e-04	ci left: 9.790159e-01	ci right 9.793198e-01	k: 3329172	n:3400000
KS ci ratio: 2.110350e-01	ci left: 9.076643e-05	ci right 1.124530e-04	k: 344	n:3400000
KRTAP1-5   3400000 perm   5635 sec   (603 perm/sec)   p_kst 1.011765e-04   p_cons 9.791682e-01   p_joint 4.485294e-04

Joint ci ratio: 1.001615e-01	ci left: 4.264818e-04	ci right 4.717342e-04	k: 1530	n:3410000
Cons ci ratio: 3.096136e-04	ci left: 9.790185e-01	ci right 9.793220e-01	k: 3338972	n:3410000
KS ci ratio: 2.104259e-01	ci left: 9.105581e-05	ci right 1.127407e-04	k: 346	n:3410000
KRTAP1-5   3410000 perm   5666 sec   (602 perm/sec)   p_kst 1.014663e-04   p_cons 9.791707e-01   p_joint 4.486804e-04

Joint ci ratio: 1.001289e-01	ci left: 4.255199e-04	ci right 4.706546e-04	k: 1531	n:3420000
Cons ci ratio: 3.091999e-04	ci left: 9.790136e-01	ci right 9.793166e-01	k: 3348746	n:3420000
KS ci ratio: 2.104259e-01	ci left: 9.078957e-05	ci right 1.124110e-04	k: 346	n:3420000
KRTAP1-5   3420000 perm   5698 sec   (600 perm/sec)   p_kst 1.011696e-04   p_cons 9.791655e-01   p_joint 4.476608e-04

Joint ci ratio: 1.015310e-01	ci left: 4.123430e-04	ci right 4.567290e-04	k: 1489	n:3430000
Cons ci ratio: 3.087481e-04	ci left: 9.790139e-01	ci right 9.793165e-01	k: 3358538	n:3430000
KS ci ratio: 2.101234e-01	ci left: 9.080107e-05	ci right 1.123902e-04	k: 347	n:3430000
KRTAP1-5   3430000 perm   5729 sec   (599 perm/sec)   p_kst 1.011662e-04   p_cons 9.791656e-01   p_joint 4.341108e-04

Joint ci ratio: 1.013950e-01	ci left: 4.122776e-04	ci right 4.565936e-04	k: 1493	n:3440000
Cons ci ratio: 3.083246e-04	ci left: 9.790107e-01	ci right 9.793129e-01	k: 3368318	n:3440000
KS ci ratio: 2.095221e-01	ci left: 9.108796e-05	ci right 1.126753e-04	k: 349	n:3440000
KRTAP1-5   3440000 perm   5759 sec   (597 perm/sec)   p_kst 1.014535e-04   p_cons 9.791622e-01   p_joint 4.340116e-04

Joint ci ratio: 1.011919e-01	ci left: 4.127777e-04	ci right 4.570533e-04	k: 1499	n:3450000
Cons ci ratio: 3.078613e-04	ci left: 9.790131e-01	ci right 9.793148e-01	k: 3378117	n:3450000
KS ci ratio: 2.092234e-01	ci left: 9.109860e-05	ci right 1.126538e-04	k: 350	n:3450000
KRTAP1-5   3450000 perm   5790 sec   (596 perm/sec)   p_kst 1.014493e-04   p_cons 9.791643e-01   p_joint 4.344928e-04

Joint ci ratio: 1.011246e-01	ci left: 4.121481e-04	ci right 4.563250e-04	k: 1501	n:3460000
Cons ci ratio: 3.073891e-04	ci left: 9.790169e-01	ci right 9.793182e-01	k: 3387921	n:3460000
KS ci ratio: 2.092235e-01	ci left: 9.083530e-05	ci right 1.123282e-04	k: 350	n:3460000
KRTAP1-5   3460000 perm   5822 sec   (594 perm/sec)   p_kst 1.011561e-04   p_cons 9.791679e-01   p_joint 4.338150e-04

Joint ci ratio: 1.010574e-01	ci left: 4.115221e-04	ci right 4.556009e-04	k: 1503	n:3470000
Cons ci ratio: 3.069517e-04	ci left: 9.790163e-01	ci right 9.793172e-01	k: 3397710	n:3470000
KS ci ratio: 2.089261e-01	ci left: 9.084663e-05	ci right 1.123077e-04	k: 351	n:3470000
KRTAP1-5   3470000 perm   5853 sec   (593 perm/sec)   p_kst 1.011527e-04   p_cons 9.791671e-01   p_joint 4.331412e-04

Joint ci ratio: 1.009903e-01	ci left: 4.108998e-04	ci right 4.548809e-04	k: 1505	n:3480000
Cons ci ratio: 3.065355e-04	ci left: 9.790132e-01	ci right 9.793136e-01	k: 3407490	n:3480000
KS ci ratio: 2.086299e-01	ci left: 9.085791e-05	ci right 1.122874e-04	k: 352	n:3480000
KRTAP1-5   3480000 perm   5886 sec   (591 perm/sec)   p_kst 1.011494e-04   p_cons 9.791638e-01   p_joint 4.324713e-04

Joint ci ratio: 1.008564e-01	ci left: 4.108396e-04	ci right 4.547526e-04	k: 1509	n:3490000
Cons ci ratio: 3.060157e-04	ci left: 9.790241e-01	ci right 9.793241e-01	k: 3417319	n:3490000
KS ci ratio: 2.086300e-01	ci left: 9.059757e-05	ci right 1.119656e-04	k: 352	n:3490000
KRTAP1-5   3490000 perm   5918 sec   (590 perm/sec)   p_kst 1.008596e-04   p_cons 9.791745e-01   p_joint 4.323782e-04

Joint ci ratio: 1.007564e-01	ci left: 4.105013e-04	ci right 4.543321e-04	k: 1512	n:3500000
Cons ci ratio: 3.056270e-04	ci left: 9.790178e-01	ci right 9.793174e-01	k: 3427088	n:3500000
KS ci ratio: 2.086300e-01	ci left: 9.033872e-05	ci right 1.116457e-04	k: 352	n:3500000
KRTAP1-5   3500000 perm   5950 sec   (588 perm/sec)   p_kst 1.005714e-04   p_cons 9.791680e-01   p_joint 4.320000e-04

Joint ci ratio: 1.006235e-01	ci left: 4.104427e-04	ci right 4.542060e-04	k: 1516	n:3510000
Cons ci ratio: 3.052204e-04	ci left: 9.790141e-01	ci right 9.793133e-01	k: 3436866	n:3510000
KS ci ratio: 2.083351e-01	ci left: 9.035137e-05	ci right 1.116274e-04	k: 353	n:3510000
KRTAP1-5   3510000 perm   5982 sec   (587 perm/sec)   p_kst 1.005698e-04   p_cons 9.791641e-01   p_joint 4.319088e-04

Joint ci ratio: 1.004251e-01	ci left: 4.109384e-04	ci right 4.546630e-04	k: 1522	n:3520000
Cons ci ratio: 3.048028e-04	ci left: 9.790122e-01	ci right 9.793109e-01	k: 3446650	n:3520000
KS ci ratio: 2.083351e-01	ci left: 9.009469e-05	ci right 1.113103e-04	k: 353	n:3520000
KRTAP1-5   3520000 perm   6014 sec   (585 perm/sec)   p_kst 1.002841e-04   p_cons 9.791619e-01   p_joint 4.323864e-04

Joint ci ratio: 1.003921e-01	ci left: 4.100504e-04	ci right 4.536654e-04	k: 1523	n:3530000
Cons ci ratio: 3.043995e-04	ci left: 9.790085e-01	ci right 9.793068e-01	k: 3456428	n:3530000
KS ci ratio: 2.083352e-01	ci left: 8.983946e-05	ci right 1.109950e-04	k: 353	n:3530000
KRTAP1-5   3530000 perm   6046 sec   (584 perm/sec)   p_kst 1.000000e-04   p_cons 9.791581e-01   p_joint 4.314448e-04

Joint ci ratio: 9.370954e-02	ci left: 4.709112e-04	ci right 5.174828e-04	k: 1748	n:3540000
Cons ci ratio: 3.039831e-04	ci left: 9.790069e-01	ci right 9.793048e-01	k: 3466213	n:3540000
KS ci ratio: 2.080415e-01	ci left: 8.985344e-05	ci right 1.109786e-04	k: 354	n:3540000
KRTAP1-5   3540000 perm   6079 sec   (582 perm/sec)   p_kst 1.000000e-04   p_cons 9.791562e-01   p_joint 4.937853e-04

Joint ci ratio: 9.365604e-02	ci left: 4.701349e-04	ci right 5.166017e-04	k: 1750	n:3550000
Cons ci ratio: 3.035558e-04	ci left: 9.790069e-01	ci right 9.793044e-01	k: 3476004	n:3550000
KS ci ratio: 2.077491e-01	ci left: 8.986735e-05	ci right 1.109623e-04	k: 355	n:3550000
KRTAP1-5   3550000 perm   6111 sec   (581 perm/sec)   p_kst 1.000000e-04   p_cons 9.791561e-01   p_joint 4.929577e-04

Joint ci ratio: 9.354926e-02	ci left: 4.699116e-04	ci right 5.163004e-04	k: 1754	n:3560000
Cons ci ratio: 3.031470e-04	ci left: 9.790047e-01	ci right 9.793018e-01	k: 3485787	n:3560000
KS ci ratio: 2.077492e-01	ci left: 8.961492e-05	ci right 1.106506e-04	k: 355	n:3560000
KRTAP1-5   3560000 perm   6144 sec   (579 perm/sec)   p_kst 9.971910e-05   p_cons 9.791537e-01   p_joint 4.926966e-04

Joint ci ratio: 9.346943e-02	ci left: 4.694160e-04	ci right 5.157142e-04	k: 1757	n:3570000
Cons ci ratio: 3.026963e-04	ci left: 9.790084e-01	ci right 9.793051e-01	k: 3495591	n:3570000
KS ci ratio: 2.077492e-01	ci left: 8.936389e-05	ci right 1.103407e-04	k: 355	n:3570000
KRTAP1-5   3570000 perm   6176 sec   (578 perm/sec)   p_kst 9.943978e-05   p_cons 9.791571e-01   p_joint 4.921569e-04

Joint ci ratio: 9.441453e-02	ci left: 4.585578e-04	ci right 5.042676e-04	k: 1722	n:3580000
Cons ci ratio: 3.022827e-04	ci left: 9.790074e-01	ci right 9.793036e-01	k: 3505378	n:3580000
KS ci ratio: 2.077492e-01	ci left: 8.911427e-05	ci right 1.100325e-04	k: 355	n:3580000
KRTAP1-5   3580000 perm   6209 sec   (577 perm/sec)   p_kst 9.916201e-05   p_cons 9.791559e-01   p_joint 4.810056e-04

Joint ci ratio: 9.422330e-02	ci left: 4.591843e-04	ci right 5.048588e-04	k: 1729	n:3590000
Cons ci ratio: 3.018501e-04	ci left: 9.790091e-01	ci right 9.793049e-01	k: 3515175	n:3590000
KS ci ratio: 2.074581e-01	ci left: 8.913011e-05	ci right 1.100190e-04	k: 356	n:3590000
KRTAP1-5   3590000 perm   6241 sec   (575 perm/sec)   p_kst 9.916435e-05   p_cons 9.791574e-01   p_joint 4.816156e-04

Joint ci ratio: 9.416891e-02	ci left: 4.584513e-04	ci right 5.040251e-04	k: 1731	n:3600000
Cons ci ratio: 3.014174e-04	ci left: 9.790111e-01	ci right 9.793065e-01	k: 3524973	n:3600000
KS ci ratio: 2.071681e-01	ci left: 8.914589e-05	ci right 1.100056e-04	k: 357	n:3600000
KRTAP1-5   3600000 perm   6274 sec   (574 perm/sec)   p_kst 9.916667e-05   p_cons 9.791592e-01   p_joint 4.808333e-04

Joint ci ratio: 9.414179e-02	ci left: 4.574518e-04	ci right 5.029124e-04	k: 1732	n:3610000
Cons ci ratio: 3.010050e-04	ci left: 9.790106e-01	ci right 9.793056e-01	k: 3534762	n:3610000
KS ci ratio: 2.071681e-01	ci left: 8.889894e-05	ci right 1.097008e-04	k: 357	n:3610000
KRTAP1-5   3610000 perm   6307 sec   (572 perm/sec)   p_kst 9.889197e-05   p_cons 9.791584e-01   p_joint 4.797784e-04

Joint ci ratio: 9.406044e-02	ci left: 4.569974e-04	ci right 5.023714e-04	k: 1735	n:3620000
Cons ci ratio: 3.006003e-04	ci left: 9.790092e-01	ci right 9.793038e-01	k: 3544548	n:3620000
KS ci ratio: 2.071682e-01	ci left: 8.865337e-05	ci right 1.093978e-04	k: 357	n:3620000
KRTAP1-5   3620000 perm   6340 sec   (571 perm/sec)   p_kst 9.861878e-05   p_cons 9.791569e-01   p_joint 4.792818e-04

Joint ci ratio: 9.395227e-02	ci left: 4.568144e-04	ci right 5.021153e-04	k: 1739	n:3630000
Cons ci ratio: 3.001628e-04	ci left: 9.790126e-01	ci right 9.793068e-01	k: 3554351	n:3630000
KS ci ratio: 2.065919e-01	ci left: 8.893157e-05	ci right 1.096759e-04	k: 359	n:3630000
KRTAP1-5   3630000 perm   6373 sec   (570 perm/sec)   p_kst 9.889807e-05   p_cons 9.791601e-01   p_joint 4.790634e-04

Joint ci ratio: 9.384447e-02	ci left: 4.566325e-04	ci right 5.018606e-04	k: 1743	n:3640000
Cons ci ratio: 2.997211e-04	ci left: 9.790168e-01	ci right 9.793105e-01	k: 3564157	n:3640000
KS ci ratio: 2.063055e-01	ci left: 8.894777e-05	ci right 1.096635e-04	k: 360	n:3640000
KRTAP1-5   3640000 perm   6405 sec   (568 perm/sec)   p_kst 9.890110e-05   p_cons 9.791640e-01   p_joint 4.788462e-04

Joint ci ratio: 9.368344e-02	ci left: 4.569868e-04	ci right 5.021680e-04	k: 1749	n:3650000
Cons ci ratio: 2.993035e-04	ci left: 9.790179e-01	ci right 9.793112e-01	k: 3573952	n:3650000
KS ci ratio: 2.057364e-01	ci left: 8.922376e-05	ci right 1.099392e-04	k: 362	n:3650000
KRTAP1-5   3650000 perm   6438 sec   (567 perm/sec)   p_kst 9.917808e-05   p_cons 9.791649e-01   p_joint 4.791781e-04

Joint ci ratio: 9.430557e-02	ci left: 4.496017e-04	ci right 4.943642e-04	k: 1726	n:3660000
Cons ci ratio: 2.989056e-04	ci left: 9.790165e-01	ci right 9.793095e-01	k: 3583738	n:3660000
KS ci ratio: 2.054536e-01	ci left: 8.923914e-05	ci right 1.099261e-04	k: 363	n:3660000
KRTAP1-5   3660000 perm   6472 sec   (566 perm/sec)   p_kst 9.918033e-05   p_cons 9.791634e-01   p_joint 4.715847e-04

Joint ci ratio: 9.414216e-02	ci left: 4.499730e-04	ci right 4.946905e-04	k: 1732	n:3670000
Cons ci ratio: 2.984974e-04	ci left: 9.790168e-01	ci right 9.793094e-01	k: 3593530	n:3670000
KS ci ratio: 2.054536e-01	ci left: 8.899598e-05	ci right 1.096266e-04	k: 363	n:3670000
KRTAP1-5   3670000 perm   6506 sec   (564 perm/sec)   p_kst 9.891008e-05   p_cons 9.791635e-01   p_joint 4.719346e-04

Joint ci ratio: 9.406080e-02	ci left: 4.495462e-04	ci right 4.941807e-04	k: 1735	n:3680000
Cons ci ratio: 2.980273e-04	ci left: 9.790259e-01	ci right 9.793179e-01	k: 3603354	n:3680000
KS ci ratio: 2.054536e-01	ci left: 8.875414e-05	ci right 1.093287e-04	k: 363	n:3680000
KRTAP1-5   3680000 perm   6540 sec   (563 perm/sec)   p_kst 9.864130e-05   p_cons 9.791723e-01   p_joint 4.714674e-04

Joint ci ratio: 9.395264e-02	ci left: 4.493865e-04	ci right 4.939509e-04	k: 1739	n:3690000
Cons ci ratio: 2.976523e-04	ci left: 9.790221e-01	ci right 9.793138e-01	k: 3613131	n:3690000
KS ci ratio: 2.054537e-01	ci left: 8.851361e-05	ci right 1.090324e-04	k: 363	n:3690000
KRTAP1-5   3690000 perm   6573 sec   (561 perm/sec)   p_kst 9.837398e-05   p_cons 9.791683e-01   p_joint 4.712737e-04

Joint ci ratio: 9.381793e-02	ci left: 4.494915e-04	ci right 4.939990e-04	k: 1744	n:3700000
Cons ci ratio: 2.972196e-04	ci left: 9.790264e-01	ci right 9.793177e-01	k: 3622938	n:3700000
KS ci ratio: 2.054537e-01	ci left: 8.827438e-05	ci right 1.087377e-04	k: 363	n:3700000
KRTAP1-5   3700000 perm   6608 sec   (560 perm/sec)   p_kst 9.810811e-05   p_cons 9.791724e-01   p_joint 4.713514e-04

Joint ci ratio: 9.389878e-02	ci left: 4.474903e-04	ci right 4.918399e-04	k: 1741	n:3710000
Cons ci ratio: 2.968025e-04	ci left: 9.790288e-01	ci right 9.793197e-01	k: 3632738	n:3710000
KS ci ratio: 2.054537e-01	ci left: 8.803645e-05	ci right 1.084446e-04	k: 363	n:3710000
KRTAP1-5   3710000 perm   6641 sec   (559 perm/sec)   p_kst 9.784367e-05   p_cons 9.791747e-01   p_joint 4.692722e-04

Joint ci ratio: 9.376431e-02	ci left: 4.475999e-04	ci right 4.918933e-04	k: 1746	n:3720000
Cons ci ratio: 2.964282e-04	ci left: 9.790256e-01	ci right 9.793161e-01	k: 3642517	n:3720000
KS ci ratio: 2.051721e-01	ci left: 8.805479e-05	ci right 1.084357e-04	k: 364	n:3720000
KRTAP1-5   3720000 perm   6674 sec   (557 perm/sec)   p_kst 9.784946e-05   p_cons 9.791712e-01   p_joint 4.693548e-04

Joint ci ratio: 9.365716e-02	ci left: 4.474472e-04	ci right 4.916721e-04	k: 1750	n:3730000
Cons ci ratio: 2.960806e-04	ci left: 9.790189e-01	ci right 9.793091e-01	k: 3652283	n:3730000
KS ci ratio: 2.048916e-01	ci left: 8.807305e-05	ci right 1.084269e-04	k: 365	n:3730000
KRTAP1-5   3730000 perm   6709 sec   (556 perm/sec)   p_kst 9.785523e-05   p_cons 9.791643e-01   p_joint 4.691689e-04

Joint ci ratio: 9.355037e-02	ci left: 4.472953e-04	ci right 4.914520e-04	k: 1754	n:3740000
Cons ci ratio: 2.957400e-04	ci left: 9.790114e-01	ci right 9.793012e-01	k: 3662046	n:3740000
KS ci ratio: 2.040570e-01	ci left: 8.859863e-05	ci right 1.089801e-04	k: 368	n:3740000
KRTAP1-5   3740000 perm   6743 sec   (555 perm/sec)   p_kst 9.839572e-05   p_cons 9.791567e-01   p_joint 4.689840e-04

Joint ci ratio: 9.344395e-02	ci left: 4.471442e-04	ci right 4.912331e-04	k: 1758	n:3750000
Cons ci ratio: 2.953446e-04	ci left: 9.790117e-01	ci right 9.793012e-01	k: 3671838	n:3750000
KS ci ratio: 2.037810e-01	ci left: 8.861542e-05	ci right 1.089697e-04	k: 369	n:3750000
KRTAP1-5   3750000 perm   6777 sec   (553 perm/sec)   p_kst 9.840000e-05   p_cons 9.791568e-01   p_joint 4.688000e-04

Joint ci ratio: 9.328497e-02	ci left: 4.475135e-04	ci right 4.915596e-04	k: 1764	n:3760000
Cons ci ratio: 2.949162e-04	ci left: 9.790168e-01	ci right 9.793058e-01	k: 3681648	n:3760000
KS ci ratio: 2.032325e-01	ci left: 8.888455e-05	ci right 1.092389e-04	k: 371	n:3760000
KRTAP1-5   3760000 perm   6811 sec   (552 perm/sec)   p_kst 9.867021e-05   p_cons 9.791617e-01   p_joint 4.691489e-04

Joint ci ratio: 9.304799e-02	ci left: 4.486581e-04	ci right 4.926986e-04	k: 1773	n:3770000
Cons ci ratio: 2.945279e-04	ci left: 9.790166e-01	ci right 9.793052e-01	k: 3691438	n:3770000
KS ci ratio: 2.026883e-01	ci left: 8.915233e-05	ci right 1.095066e-04	k: 373	n:3770000
KRTAP1-5   3770000 perm   6844 sec   (551 perm/sec)   p_kst 9.893899e-05   p_cons 9.791613e-01   p_joint 4.702918e-04

Joint ci ratio: 9.294327e-02	ci left: 4.485048e-04	ci right 4.924780e-04	k: 1777	n:3780000
Cons ci ratio: 2.941525e-04	ci left: 9.790148e-01	ci right 9.793030e-01	k: 3701222	n:3780000
KS ci ratio: 2.024179e-01	ci left: 8.916761e-05	ci right 1.094948e-04	k: 374	n:3780000
KRTAP1-5   3780000 perm   6877 sec   (550 perm/sec)   p_kst 9.894180e-05   p_cons 9.791593e-01   p_joint 4.701058e-04

Joint ci ratio: 9.283891e-02	ci left: 4.483523e-04	ci right 4.922585e-04	k: 1781	n:3790000
Cons ci ratio: 2.938052e-04	ci left: 9.790092e-01	ci right 9.792972e-01	k: 3710992	n:3790000
KS ci ratio: 2.018802e-01	ci left: 8.943333e-05	ci right 1.097603e-04	k: 376	n:3790000
KRTAP1-5   3790000 perm   6911 sec   (548 perm/sec)   p_kst 9.920844e-05   p_cons 9.791536e-01   p_joint 4.699208e-04

Joint ci ratio: 9.268299e-02	ci left: 4.487147e-04	ci right 4.925786e-04	k: 1787	n:3800000
Cons ci ratio: 2.933910e-04	ci left: 9.790132e-01	ci right 9.793008e-01	k: 3720798	n:3800000
KS ci ratio: 2.018802e-01	ci left: 8.919798e-05	ci right 1.094715e-04	k: 376	n:3800000
KRTAP1-5   3800000 perm   6946 sec   (547 perm/sec)   p_kst 9.894737e-05   p_cons 9.791574e-01   p_joint 4.702632e-04

Joint ci ratio: 9.257950e-02	ci left: 4.485625e-04	ci right 4.923599e-04	k: 1791	n:3810000
Cons ci ratio: 2.929767e-04	ci left: 9.790175e-01	ci right 9.793046e-01	k: 3730605	n:3810000
KS ci ratio: 2.010817e-01	ci left: 8.971155e-05	ci right 1.100112e-04	k: 379	n:3810000
KRTAP1-5   3810000 perm   6980 sec   (546 perm/sec)   p_kst 9.947507e-05   p_cons 9.791614e-01   p_joint 4.700787e-04

Joint ci ratio: 9.247636e-02	ci left: 4.484112e-04	ci right 4.921424e-04	k: 1795	n:3820000
Cons ci ratio: 2.926016e-04	ci left: 9.790165e-01	ci right 9.793032e-01	k: 3740392	n:3820000
KS ci ratio: 2.010817e-01	ci left: 8.947670e-05	ci right 1.097232e-04	k: 379	n:3820000
KRTAP1-5   3820000 perm   7014 sec   (545 perm/sec)   p_kst 9.921466e-05   p_cons 9.791602e-01   p_joint 4.698953e-04

Joint ci ratio: 9.232226e-02	ci left: 4.487708e-04	ci right 4.924602e-04	k: 1801	n:3830000
Cons ci ratio: 2.922186e-04	ci left: 9.790168e-01	ci right 9.793031e-01	k: 3750184	n:3830000
KS ci ratio: 2.010818e-01	ci left: 8.924308e-05	ci right 1.094367e-04	k: 379	n:3830000
KRTAP1-5   3830000 perm   7048 sec   (543 perm/sec)   p_kst 9.895561e-05   p_cons 9.791603e-01   p_joint 4.702350e-04

Joint ci ratio: 9.219444e-02	ci left: 4.488741e-04	ci right 4.925099e-04	k: 1806	n:3840000
Cons ci ratio: 2.918353e-04	ci left: 9.790173e-01	ci right 9.793033e-01	k: 3759977	n:3840000
KS ci ratio: 2.008177e-01	ci left: 8.925799e-05	ci right 1.094252e-04	k: 380	n:3840000
KRTAP1-5   3840000 perm   7083 sec   (542 perm/sec)   p_kst 9.895833e-05   p_cons 9.791607e-01   p_joint 4.703125e-04

Joint ci ratio: 9.211802e-02	ci left: 4.484695e-04	ci right 4.920278e-04	k: 1809	n:3850000
Cons ci ratio: 2.914497e-04	ci left: 9.790184e-01	ci right 9.793040e-01	k: 3769772	n:3850000
KS ci ratio: 2.005547e-01	ci left: 8.927284e-05	ci right 1.094138e-04	k: 381	n:3850000
KRTAP1-5   3850000 perm   7117 sec   (541 perm/sec)   p_kst 9.896104e-05   p_cons 9.791616e-01   p_joint 4.698701e-04

Joint ci ratio: 9.204180e-02	ci left: 4.480670e-04	ci right 4.915482e-04	k: 1812	n:3860000
Cons ci ratio: 2.910509e-04	ci left: 9.790215e-01	ci right 9.793068e-01	k: 3779575	n:3860000
KS ci ratio: 2.002927e-01	ci left: 8.928763e-05	ci right 1.094024e-04	k: 382	n:3860000
KRTAP1-5   3860000 perm   7151 sec   (540 perm/sec)   p_kst 9.896373e-05   p_cons 9.791645e-01   p_joint 4.694301e-04

Joint ci ratio: 9.196576e-02	ci left: 4.476665e-04	ci right 4.910711e-04	k: 1815	n:3870000
Cons ci ratio: 2.906445e-04	ci left: 9.790260e-01	ci right 9.793108e-01	k: 3789383	n:3870000
KS ci ratio: 2.002927e-01	ci left: 8.905691e-05	ci right 1.091197e-04	k: 382	n:3870000
KRTAP1-5   3870000 perm   7185 sec   (539 perm/sec)   p_kst 9.870801e-05   p_cons 9.791687e-01   p_joint 4.689922e-04

Joint ci ratio: 9.194049e-02	ci left: 4.467645e-04	ci right 4.900691e-04	k: 1816	n:3880000
Cons ci ratio: 2.902178e-04	ci left: 9.790335e-01	ci right 9.793179e-01	k: 3799203	n:3880000
KS ci ratio: 2.002927e-01	ci left: 8.882738e-05	ci right 1.088385e-04	k: 382	n:3880000
KRTAP1-5   3880000 perm   7221 sec   (537 perm/sec)   p_kst 9.845361e-05   p_cons 9.791760e-01   p_joint 4.680412e-04

Joint ci ratio: 9.176388e-02	ci left: 4.473742e-04	ci right 4.906501e-04	k: 1823	n:3890000
Cons ci ratio: 2.898240e-04	ci left: 9.790365e-01	ci right 9.793206e-01	k: 3809006	n:3890000
KS ci ratio: 2.000318e-01	ci left: 8.884322e-05	ci right 1.088286e-04	k: 383	n:3890000
KRTAP1-5   3890000 perm   7255 sec   (536 perm/sec)   p_kst 9.845758e-05   p_cons 9.791789e-01   p_joint 4.686375e-04

Joint ci ratio: 9.171364e-02	ci left: 4.467281e-04	ci right 4.899166e-04	k: 1825	n:3900000
Cons ci ratio: 2.894390e-04	ci left: 9.790386e-01	ci right 9.793222e-01	k: 3818805	n:3900000
KS ci ratio: 1.997718e-01	ci left: 8.885899e-05	ci right 1.088188e-04	k: 384	n:3900000
KRTAP1-5   3900000 perm   7289 sec   (535 perm/sec)   p_kst 9.846154e-05   p_cons 9.791808e-01   p_joint 4.679487e-04

Joint ci ratio: 9.214383e-02	ci left: 4.413377e-04	ci right 4.842159e-04	k: 1808	n:3910000
Cons ci ratio: 2.890973e-04	ci left: 9.790347e-01	ci right 9.793180e-01	k: 3828581	n:3910000
KS ci ratio: 1.997718e-01	ci left: 8.863173e-05	ci right 1.085405e-04	k: 384	n:3910000
KRTAP1-5   3910000 perm   7324 sec   (534 perm/sec)   p_kst 9.820972e-05   p_cons 9.791767e-01   p_joint 4.624041e-04

Joint ci ratio: 9.237406e-02	ci left: 4.379688e-04	ci right 4.806318e-04	k: 1799	n:3920000
Cons ci ratio: 2.887586e-04	ci left: 9.790306e-01	ci right 9.793136e-01	k: 3838356	n:3920000
KS ci ratio: 1.997719e-01	ci left: 8.840563e-05	ci right 1.082636e-04	k: 384	n:3920000
KRTAP1-5   3920000 perm   7359 sec   (533 perm/sec)   p_kst 9.795918e-05   p_cons 9.791724e-01   p_joint 4.589286e-04

Joint ci ratio: 9.227160e-02	ci left: 4.378487e-04	ci right 4.804502e-04	k: 1803	n:3930000
Cons ci ratio: 2.884085e-04	ci left: 9.790283e-01	ci right 9.793109e-01	k: 3848138	n:3930000
KS ci ratio: 1.995129e-01	ci left: 8.842241e-05	ci right 1.082553e-04	k: 385	n:3930000
KRTAP1-5   3930000 perm   7393 sec   (532 perm/sec)   p_kst 9.796438e-05   p_cons 9.791700e-01   p_joint 4.587786e-04

Joint ci ratio: 9.216948e-02	ci left: 4.377292e-04	ci right 4.802694e-04	k: 1807	n:3940000
Cons ci ratio: 2.879844e-04	ci left: 9.790367e-01	ci right 9.793189e-01	k: 3857962	n:3940000
KS ci ratio: 1.995129e-01	ci left: 8.819799e-05	ci right 1.079805e-04	k: 385	n:3940000
KRTAP1-5   3940000 perm   7429 sec   (530 perm/sec)   p_kst 9.771574e-05   p_cons 9.791782e-01   p_joint 4.586294e-04

Joint ci ratio: 9.186503e-02	ci left: 4.395892e-04	ci right 4.821614e-04	k: 1819	n:3950000
Cons ci ratio: 2.875924e-04	ci left: 9.790407e-01	ci right 9.793226e-01	k: 3867769	n:3950000
KS ci ratio: 1.984871e-01	ci left: 8.893691e-05	ci right 1.087702e-04	k: 389	n:3950000
KRTAP1-5   3950000 perm   7464 sec   (529 perm/sec)   p_kst 9.848101e-05   p_cons 9.791820e-01   p_joint 4.605063e-04

Joint ci ratio: 9.178943e-02	ci left: 4.392193e-04	ci right 4.817188e-04	k: 1822	n:3960000
Cons ci ratio: 2.872679e-04	ci left: 9.790354e-01	ci right 9.793169e-01	k: 3877539	n:3960000
KS ci ratio: 1.984871e-01	ci left: 8.871232e-05	ci right 1.084955e-04	k: 389	n:3960000
KRTAP1-5   3960000 perm   7499 sec   (528 perm/sec)   p_kst 9.823232e-05   p_cons 9.791765e-01   p_joint 4.601010e-04

Joint ci ratio: 9.153865e-02	ci left: 4.405741e-04	ci right 4.830820e-04	k: 1832	n:3970000
Cons ci ratio: 2.868824e-04	ci left: 9.790389e-01	ci right 9.793201e-01	k: 3887344	n:3970000
KS ci ratio: 1.982331e-01	ci left: 8.872824e-05	ci right 1.084866e-04	k: 390	n:3970000
KRTAP1-5   3970000 perm   7535 sec   (527 perm/sec)   p_kst 9.823678e-05   p_cons 9.791798e-01   p_joint 4.614610e-04

Joint ci ratio: 9.143894e-02	ci left: 4.404491e-04	ci right 4.828962e-04	k: 1836	n:3980000
Cons ci ratio: 2.865550e-04	ci left: 9.790344e-01	ci right 9.793152e-01	k: 3897117	n:3980000
KS ci ratio: 1.982332e-01	ci left: 8.850531e-05	ci right 1.082140e-04	k: 390	n:3980000
KRTAP1-5   3980000 perm   7570 sec   (526 perm/sec)   p_kst 9.798995e-05   p_cons 9.791751e-01   p_joint 4.613065e-04

Joint ci ratio: 9.136439e-02	ci left: 4.400799e-04	ci right 4.824550e-04	k: 1839	n:3990000
Cons ci ratio: 2.862040e-04	ci left: 9.790333e-01	ci right 9.793138e-01	k: 3906904	n:3990000
KS ci ratio: 1.982332e-01	ci left: 8.828349e-05	ci right 1.079428e-04	k: 390	n:3990000
KRTAP1-5   3990000 perm   7605 sec   (525 perm/sec)   p_kst 9.774436e-05   p_cons 9.791739e-01   p_joint 4.609023e-04

Joint ci ratio: 9.121577e-02	ci left: 4.404455e-04	ci right 4.827831e-04	k: 1845	n:4000000
Cons ci ratio: 2.857860e-04	ci left: 9.790421e-01	ci right 9.793222e-01	k: 3916730	n:4000000
KS ci ratio: 1.979802e-01	ci left: 8.830038e-05	ci right 1.079354e-04	k: 391	n:4000000
KRTAP1-5   4000000 perm   7640 sec   (524 perm/sec)   p_kst 9.775000e-05   p_cons 9.791825e-01   p_joint 4.612500e-04

Joint ci ratio: 9.114176e-02	ci left: 4.400782e-04	ci right 4.823443e-04	k: 1848	n:4010000
Cons ci ratio: 2.854291e-04	ci left: 9.790423e-01	ci right 9.793221e-01	k: 3926522	n:4010000
KS ci ratio: 1.979802e-01	ci left: 8.808018e-05	ci right 1.076662e-04	k: 391	n:4010000
KRTAP1-5   4010000 perm   7678 sec   (522 perm/sec)   p_kst 9.750623e-05   p_cons 9.791825e-01   p_joint 4.608479e-04

Joint ci ratio: 9.101877e-02	ci left: 4.401989e-04	ci right 4.824166e-04	k: 1853	n:4020000
Cons ci ratio: 2.850944e-04	ci left: 9.790396e-01	ci right 9.793190e-01	k: 3936302	n:4020000
KS ci ratio: 1.977282e-01	ci left: 8.809751e-05	ci right 1.076594e-04	k: 392	n:4020000
KRTAP1-5   4020000 perm   7714 sec   (521 perm/sec)   p_kst 9.751244e-05   p_cons 9.791796e-01   p_joint 4.609453e-04

Joint ci ratio: 9.087183e-02	ci left: 4.405616e-04	ci right 4.827422e-04	k: 1859	n:4030000
Cons ci ratio: 2.847609e-04	ci left: 9.790368e-01	ci right 9.793159e-01	k: 3946082	n:4030000
KS ci ratio: 1.972269e-01	ci left: 8.835064e-05	ci right 1.079131e-04	k: 394	n:4030000
KRTAP1-5   4030000 perm   7751 sec   (520 perm/sec)   p_kst 9.776675e-05   p_cons 9.791767e-01   p_joint 4.612903e-04

Joint ci ratio: 9.077429e-02	ci left: 4.404387e-04	ci right 4.825599e-04	k: 1863	n:4040000
Cons ci ratio: 2.843854e-04	ci left: 9.790403e-01	ci right 9.793190e-01	k: 3955887	n:4040000
KS ci ratio: 1.969777e-01	ci left: 8.836726e-05	ci right 1.079057e-04	k: 395	n:4040000
KRTAP1-5   4040000 perm   7787 sec   (519 perm/sec)   p_kst 9.777228e-05   p_cons 9.791800e-01   p_joint 4.611386e-04

Joint ci ratio: 9.067705e-02	ci left: 4.403165e-04	ci right 4.823784e-04	k: 1867	n:4050000
Cons ci ratio: 2.840252e-04	ci left: 9.790417e-01	ci right 9.793201e-01	k: 3965684	n:4050000
KS ci ratio: 1.967295e-01	ci left: 8.838382e-05	ci right 1.078983e-04	k: 396	n:4050000
KRTAP1-5   4050000 perm   7824 sec   (518 perm/sec)   p_kst 9.777778e-05   p_cons 9.791812e-01   p_joint 4.609877e-04

Joint ci ratio: 9.058013e-02	ci left: 4.401948e-04	ci right 4.821978e-04	k: 1871	n:4060000
Cons ci ratio: 2.836560e-04	ci left: 9.790447e-01	ci right 9.793226e-01	k: 3975487	n:4060000
KS ci ratio: 1.964822e-01	ci left: 8.840031e-05	ci right 1.078910e-04	k: 397	n:4060000
KRTAP1-5   4060000 perm   7862 sec   (516 perm/sec)   p_kst 9.778325e-05   p_cons 9.791840e-01   p_joint 4.608374e-04

Joint ci ratio: 9.072576e-02	ci left: 4.376725e-04	ci right 4.795055e-04	k: 1865	n:4070000
Cons ci ratio: 2.832746e-04	ci left: 9.790495e-01	ci right 9.793272e-01	k: 3985298	n:4070000
KS ci ratio: 1.964822e-01	ci left: 8.818310e-05	ci right 1.076259e-04	k: 397	n:4070000
KRTAP1-5   4070000 perm   7899 sec   (515 perm/sec)   p_kst 9.754300e-05   p_cons 9.791887e-01   p_joint 4.582310e-04

Joint ci ratio: 9.055604e-02	ci left: 4.382765e-04	ci right 4.800848e-04	k: 1872	n:4080000
Cons ci ratio: 2.828964e-04	ci left: 9.790542e-01	ci right 9.793314e-01	k: 3995108	n:4080000
KS ci ratio: 1.955022e-01	ci left: 8.889926e-05	ci right 1.083905e-04	k: 401	n:4080000
KRTAP1-5   4080000 perm   7936 sec   (514 perm/sec)   p_kst 9.828431e-05   p_cons 9.791931e-01   p_joint 4.588235e-04

Joint ci ratio: 9.058028e-02	ci left: 4.369660e-04	ci right 4.786610e-04	k: 1871	n:4090000
Cons ci ratio: 2.825536e-04	ci left: 9.790539e-01	ci right 9.793308e-01	k: 4004898	n:4090000
KS ci ratio: 1.947767e-01	ci left: 8.937956e-05	ci right 1.088948e-04	k: 404	n:4090000
KRTAP1-5   4090000 perm   7974 sec   (513 perm/sec)   p_kst 9.877751e-05   p_cons 9.791927e-01   p_joint 4.574572e-04

Joint ci ratio: 9.048367e-02	ci left: 4.368537e-04	ci right 4.784912e-04	k: 1875	n:4100000
Cons ci ratio: 2.821851e-04	ci left: 9.790575e-01	ci right 9.793340e-01	k: 4014704	n:4100000
KS ci ratio: 1.947767e-01	ci left: 8.916156e-05	ci right 1.086292e-04	k: 404	n:4100000
KRTAP1-5   4100000 perm   8011 sec   (512 perm/sec)   p_kst 9.853659e-05   p_cons 9.791961e-01   p_joint 4.573171e-04

Joint ci ratio: 9.041143e-02	ci left: 4.365042e-04	ci right 4.780734e-04	k: 1878	n:4110000
Cons ci ratio: 2.818280e-04	ci left: 9.790596e-01	ci right 9.793358e-01	k: 4024504	n:4110000
KS ci ratio: 1.945367e-01	ci left: 8.917608e-05	ci right 1.086200e-04	k: 405	n:4110000
KRTAP1-5   4110000 perm   8047 sec   (511 perm/sec)   p_kst 9.854015e-05   p_cons 9.791981e-01   p_joint 4.569343e-04

Joint ci ratio: 9.033936e-02	ci left: 4.361565e-04	ci right 4.776577e-04	k: 1881	n:4120000
Cons ci ratio: 2.814874e-04	ci left: 9.790595e-01	ci right 9.793354e-01	k: 4034295	n:4120000
KS ci ratio: 1.945367e-01	ci left: 8.895963e-05	ci right 1.083564e-04	k: 405	n:4120000
KRTAP1-5   4120000 perm   8083 sec   (510 perm/sec)   p_kst 9.830097e-05   p_cons 9.791978e-01   p_joint 4.565534e-04

Joint ci ratio: 9.014792e-02	ci left: 4.369937e-04	ci right 4.784818e-04	k: 1889	n:4130000
Cons ci ratio: 2.811615e-04	ci left: 9.790575e-01	ci right 9.793331e-01	k: 4044078	n:4130000
KS ci ratio: 1.945367e-01	ci left: 8.874423e-05	ci right 1.080940e-04	k: 405	n:4130000
KRTAP1-5   4130000 perm   8119 sec   (509 perm/sec)   p_kst 9.806295e-05   p_cons 9.791956e-01   p_joint 4.573850e-04

Joint ci ratio: 8.308149e-02	ci left: 5.151071e-04	ci right 5.599924e-04	k: 2224	n:4140000
Cons ci ratio: 2.808149e-04	ci left: 9.790587e-01	ci right 9.793339e-01	k: 4053874	n:4140000
KS ci ratio: 1.942976e-01	ci left: 8.875966e-05	ci right 1.080862e-04	k: 406	n:4140000
KRTAP1-5   4140000 perm   8156 sec   (508 perm/sec)   p_kst 9.806763e-05   p_cons 9.791966e-01   p_joint 5.371981e-04

Joint ci ratio: 8.295109e-02	ci left: 5.155176e-04	ci right 5.603647e-04	k: 2231	n:4150000
Cons ci ratio: 2.804614e-04	ci left: 9.790610e-01	ci right 9.793359e-01	k: 4063675	n:4150000
KS ci ratio: 1.940594e-01	ci left: 8.877503e-05	ci right 1.080784e-04	k: 407	n:4150000
KRTAP1-5   4150000 perm   8192 sec   (507 perm/sec)   p_kst 9.807229e-05   p_cons 9.791988e-01   p_joint 5.375904e-04

Joint ci ratio: 8.280280e-02	ci left: 5.161617e-04	ci right 5.609806e-04	k: 2239	n:4160000
Cons ci ratio: 2.801043e-04	ci left: 9.790641e-01	ci right 9.793386e-01	k: 4073479	n:4160000
KS ci ratio: 1.940594e-01	ci left: 8.856163e-05	ci right 1.078186e-04	k: 407	n:4160000
KRTAP1-5   4160000 perm   8230 sec   (505 perm/sec)   p_kst 9.783654e-05   p_cons 9.792017e-01   p_joint 5.382212e-04

Joint ci ratio: 8.274744e-02	ci left: 5.156284e-04	ci right 5.603697e-04	k: 2242	n:4170000
Cons ci ratio: 2.797518e-04	ci left: 9.790667e-01	ci right 9.793408e-01	k: 4083281	n:4170000
KS ci ratio: 1.940594e-01	ci left: 8.834925e-05	ci right 1.075601e-04	k: 407	n:4170000
KRTAP1-5   4170000 perm   8267 sec   (504 perm/sec)   p_kst 9.760192e-05   p_cons 9.792041e-01   p_joint 5.376499e-04

Joint ci ratio: 8.265537e-02	ci left: 5.155663e-04	ci right 5.602500e-04	k: 2247	n:4180000
Cons ci ratio: 2.794186e-04	ci left: 9.790666e-01	ci right 9.793404e-01	k: 4093072	n:4180000
KS ci ratio: 1.938220e-01	ci left: 8.836551e-05	ci right 1.075536e-04	k: 408	n:4180000
KRTAP1-5   4180000 perm   8304 sec   (503 perm/sec)   p_kst 9.760766e-05   p_cons 9.792038e-01   p_joint 5.375598e-04

Joint ci ratio: 8.260029e-02	ci left: 5.150370e-04	ci right 5.596436e-04	k: 2250	n:4190000
Cons ci ratio: 2.790458e-04	ci left: 9.790725e-01	ci right 9.793460e-01	k: 4102888	n:4190000
KS ci ratio: 1.935855e-01	ci left: 8.838170e-05	ci right 1.075471e-04	k: 409	n:4190000
KRTAP1-5   4190000 perm   8342 sec   (502 perm/sec)   p_kst 9.761337e-05   p_cons 9.792095e-01   p_joint 5.369928e-04

Joint ci ratio: 8.247214e-02	ci left: 5.154430e-04	ci right 5.600122e-04	k: 2257	n:4200000
Cons ci ratio: 2.787380e-04	ci left: 9.790690e-01	ci right 9.793422e-01	k: 4112665	n:4200000
KS ci ratio: 1.933499e-01	ci left: 8.839783e-05	ci right 1.075407e-04	k: 410	n:4200000
KRTAP1-5   4200000 perm   8380 sec   (501 perm/sec)   p_kst 9.761905e-05   p_cons 9.792060e-01   p_joint 5.373810e-04

Joint ci ratio: 8.232641e-02	ci left: 5.160797e-04	ci right 5.606214e-04	k: 2265	n:4210000
Cons ci ratio: 2.784036e-04	ci left: 9.790697e-01	ci right 9.793425e-01	k: 4122459	n:4210000
KS ci ratio: 1.931151e-01	ci left: 8.841390e-05	ci right 1.075343e-04	k: 411	n:4210000
KRTAP1-5   4210000 perm   8417 sec   (500 perm/sec)   p_kst 9.762470e-05   p_cons 9.792064e-01   p_joint 5.380048e-04

Joint ci ratio: 8.227199e-02	ci left: 5.155531e-04	ci right 5.600184e-04	k: 2268	n:4220000
Cons ci ratio: 2.781093e-04	ci left: 9.790646e-01	ci right 9.793371e-01	k: 4132229	n:4220000
KS ci ratio: 1.931151e-01	ci left: 8.820439e-05	ci right 1.072794e-04	k: 411	n:4220000
KRTAP1-5   4220000 perm   8454 sec   (499 perm/sec)   p_kst 9.739336e-05   p_cons 9.792012e-01   p_joint 5.374408e-04

Joint ci ratio: 8.219958e-02	ci left: 5.152604e-04	ci right 5.596596e-04	k: 2272	n:4230000
Cons ci ratio: 2.777658e-04	ci left: 9.790669e-01	ci right 9.793391e-01	k: 4142030	n:4230000
KS ci ratio: 1.931151e-01	ci left: 8.799587e-05	ci right 1.070258e-04	k: 411	n:4230000
KRTAP1-5   4230000 perm   8492 sec   (498 perm/sec)   p_kst 9.716312e-05   p_cons 9.792033e-01   p_joint 5.371158e-04

Joint ci ratio: 8.326945e-02	ci left: 5.006488e-04	ci right 5.443776e-04	k: 2214	n:4240000
Cons ci ratio: 2.774333e-04	ci left: 9.790677e-01	ci right 9.793396e-01	k: 4151825	n:4240000
KS ci ratio: 1.926481e-01	ci left: 8.823725e-05	ci right 1.072678e-04	k: 413	n:4240000
KRTAP1-5   4240000 perm   8531 sec   (497 perm/sec)   p_kst 9.740566e-05   p_cons 9.792040e-01   p_joint 5.221698e-04

Joint ci ratio: 8.317562e-02	ci left: 5.006228e-04	ci right 5.442977e-04	k: 2219	n:4250000
Cons ci ratio: 2.770988e-04	ci left: 9.790691e-01	ci right 9.793406e-01	k: 4161622	n:4250000
KS ci ratio: 1.924158e-01	ci left: 8.825359e-05	ci right 1.072621e-04	k: 414	n:4250000
KRTAP1-5   4250000 perm   8569 sec   (496 perm/sec)   p_kst 9.741176e-05   p_cons 9.792052e-01   p_joint 5.221176e-04

Joint ci ratio: 8.325075e-02	ci left: 4.985282e-04	ci right 5.420615e-04	k: 2215	n:4260000
Cons ci ratio: 2.767990e-04	ci left: 9.790654e-01	ci right 9.793367e-01	k: 4171398	n:4260000
KS ci ratio: 1.921844e-01	ci left: 8.826986e-05	ci right 1.072563e-04	k: 415	n:4260000
KRTAP1-5   4260000 perm   8607 sec   (495 perm/sec)   p_kst 9.741784e-05   p_cons 9.792014e-01   p_joint 5.199531e-04

Joint ci ratio: 8.311955e-02	ci left: 4.989659e-04	ci right 5.424655e-04	k: 2222	n:4270000
Cons ci ratio: 2.764699e-04	ci left: 9.790663e-01	ci right 9.793373e-01	k: 4181193	n:4270000
KS ci ratio: 1.917241e-01	ci left: 8.850901e-05	ci right 1.074960e-04	k: 417	n:4270000
KRTAP1-5   4270000 perm   8645 sec   (494 perm/sec)   p_kst 9.765808e-05   p_cons 9.792021e-01   p_joint 5.203747e-04

Joint ci ratio: 8.342051e-02	ci left: 4.941396e-04	ci right 5.373820e-04	k: 2206	n:4280000
Cons ci ratio: 2.761499e-04	ci left: 9.790660e-01	ci right 9.793366e-01	k: 4190983	n:4280000
KS ci ratio: 1.914951e-01	ci left: 8.852466e-05	ci right 1.074897e-04	k: 418	n:4280000
KRTAP1-5   4280000 perm   8683 sec   (493 perm/sec)   p_kst 9.766355e-05   p_cons 9.792016e-01   p_joint 5.154206e-04

Joint ci ratio: 8.334503e-02	ci left: 4.939007e-04	ci right 5.370812e-04	k: 2210	n:4290000
Cons ci ratio: 2.758500e-04	ci left: 9.790629e-01	ci right 9.793332e-01	k: 4200761	n:4290000
KS ci ratio: 1.912670e-01	ci left: 8.854024e-05	ci right 1.074834e-04	k: 419	n:4290000
KRTAP1-5   4290000 perm   8721 sec   (492 perm/sec)   p_kst 9.766900e-05   p_cons 9.791984e-01   p_joint 5.151515e-04

Joint ci ratio: 8.323216e-02	ci left: 4.941184e-04	ci right 5.372565e-04	k: 2216	n:4300000
Cons ci ratio: 2.755385e-04	ci left: 9.790616e-01	ci right 9.793317e-01	k: 4210547	n:4300000
KS ci ratio: 1.908132e-01	ci left: 8.877720e-05	ci right 1.077207e-04	k: 421	n:4300000
KRTAP1-5   4300000 perm   8760 sec   (491 perm/sec)   p_kst 9.790698e-05   p_cons 9.791970e-01   p_joint 5.153488e-04

Joint ci ratio: 8.407108e-02	ci left: 4.829765e-04	ci right 5.255878e-04	k: 2172	n:4310000
Cons ci ratio: 2.752609e-04	ci left: 9.790555e-01	ci right 9.793253e-01	k: 4220312	n:4310000
KS ci ratio: 1.905875e-01	ci left: 8.879216e-05	ci right 1.077139e-04	k: 422	n:4310000
KRTAP1-5   4310000 perm   8797 sec   (490 perm/sec)   p_kst 9.791183e-05   p_cons 9.791907e-01   p_joint 5.039443e-04

Joint ci ratio: 8.401313e-02	ci left: 4.825384e-04	ci right 5.250802e-04	k: 2175	n:4320000
Cons ci ratio: 2.749373e-04	ci left: 9.790564e-01	ci right 9.793258e-01	k: 4230107	n:4320000
KS ci ratio: 1.905876e-01	ci left: 8.858663e-05	ci right 1.074646e-04	k: 422	n:4320000
KRTAP1-5   4320000 perm   8836 sec   (489 perm/sec)   p_kst 9.768519e-05   p_cons 9.791914e-01   p_joint 5.034722e-04

Joint ci ratio: 8.399387e-02	ci left: 4.816500e-04	ci right 5.241034e-04	k: 2176	n:4330000
Cons ci ratio: 2.746413e-04	ci left: 9.790533e-01	ci right 9.793225e-01	k: 4239885	n:4330000
KS ci ratio: 1.905876e-01	ci left: 8.838204e-05	ci right 1.072164e-04	k: 422	n:4330000
KRTAP1-5   4330000 perm   8874 sec   (488 perm/sec)   p_kst 9.745958e-05   p_cons 9.791882e-01   p_joint 5.025404e-04

Joint ci ratio: 8.389758e-02	ci left: 4.816681e-04	ci right 5.240720e-04	k: 2181	n:4340000
Cons ci ratio: 2.743323e-04	ci left: 9.790524e-01	ci right 9.793212e-01	k: 4249672	n:4340000
KS ci ratio: 1.901386e-01	ci left: 8.861726e-05	ci right 1.074521e-04	k: 424	n:4340000
KRTAP1-5   4340000 perm   8912 sec   (487 perm/sec)   p_kst 9.769585e-05   p_cons 9.791871e-01   p_joint 5.025346e-04

Joint ci ratio: 8.378246e-02	ci left: 4.819113e-04	ci right 5.242755e-04	k: 2187	n:4350000
Cons ci ratio: 2.740676e-04	ci left: 9.790449e-01	ci right 9.793135e-01	k: 4259431	n:4350000
KS ci ratio: 1.899153e-01	ci left: 8.863249e-05	ci right 1.074459e-04	k: 425	n:4350000
KRTAP1-5   4350000 perm   8950 sec   (486 perm/sec)   p_kst 9.770115e-05   p_cons 9.791795e-01   p_joint 5.027586e-04

Joint ci ratio: 8.368689e-02	ci left: 4.819287e-04	ci right 5.242438e-04	k: 2192	n:4360000
Cons ci ratio: 2.737666e-04	ci left: 9.790431e-01	ci right 9.793113e-01	k: 4269214	n:4360000
KS ci ratio: 1.899153e-01	ci left: 8.842921e-05	ci right 1.071994e-04	k: 425	n:4360000
KRTAP1-5   4360000 perm   8987 sec   (485 perm/sec)   p_kst 9.747706e-05   p_cons 9.791775e-01   p_joint 5.027523e-04

Joint ci ratio: 8.349669e-02	ci left: 4.830664e-04	ci right 5.253803e-04	k: 2202	n:4370000
Cons ci ratio: 2.735004e-04	ci left: 9.790361e-01	ci right 9.793042e-01	k: 4278975	n:4370000
KS ci ratio: 1.892501e-01	ci left: 8.888077e-05	ci right 1.076732e-04	k: 428	n:4370000
KRTAP1-5   4370000 perm   9026 sec   (484 perm/sec)   p_kst 9.794050e-05   p_cons 9.791705e-01   p_joint 5.038902e-04

Joint ci ratio: 8.340210e-02	ci left: 4.830813e-04	ci right 5.253462e-04	k: 2207	n:4380000
Cons ci ratio: 2.732013e-04	ci left: 9.790343e-01	ci right 9.793020e-01	k: 4288758	n:4380000
KS ci ratio: 1.892501e-01	ci left: 8.867785e-05	ci right 1.074274e-04	k: 428	n:4380000
KRTAP1-5   4380000 perm   9065 sec   (483 perm/sec)   p_kst 9.771689e-05   p_cons 9.791685e-01   p_joint 5.038813e-04

Joint ci ratio: 8.327019e-02	ci left: 4.835422e-04	ci right 5.257772e-04	k: 2214	n:4390000
Cons ci ratio: 2.728849e-04	ci left: 9.790352e-01	ci right 9.793026e-01	k: 4298553	n:4390000
KS ci ratio: 1.890299e-01	ci left: 8.869285e-05	ci right 1.074212e-04	k: 429	n:4390000
KRTAP1-5   4390000 perm   9104 sec   (482 perm/sec)   p_kst 9.772210e-05   p_cons 9.791692e-01   p_joint 5.043280e-04

Joint ci ratio: 8.380186e-02	ci left: 4.762124e-04	ci right 5.180858e-04	k: 2186	n:4400000
Cons ci ratio: 2.725347e-04	ci left: 9.790414e-01	ci right 9.793085e-01	k: 4308371	n:4400000
KS ci ratio: 1.885918e-01	ci left: 8.892434e-05	ci right 1.076531e-04	k: 431	n:4400000
KRTAP1-5   4400000 perm   9143 sec   (481 perm/sec)   p_kst 9.795455e-05   p_cons 9.791752e-01   p_joint 4.968182e-04

Joint ci ratio: 8.374446e-02	ci left: 4.757986e-04	ci right 5.176056e-04	k: 2189	n:4410000
Cons ci ratio: 2.722403e-04	ci left: 9.790393e-01	ci right 9.793061e-01	k: 4318153	n:4410000
KS ci ratio: 1.885918e-01	ci left: 8.872269e-05	ci right 1.074090e-04	k: 431	n:4410000
KRTAP1-5   4410000 perm   9182 sec   (480 perm/sec)   p_kst 9.773243e-05   p_cons 9.791730e-01   p_joint 4.963719e-04

Joint ci ratio: 8.361092e-02	ci left: 4.762727e-04	ci right 5.180513e-04	k: 2196	n:4420000
Cons ci ratio: 2.719589e-04	ci left: 9.790354e-01	ci right 9.793019e-01	k: 4327927	n:4420000
KS ci ratio: 1.879403e-01	ci left: 8.916871e-05	ci right 1.078766e-04	k: 434	n:4420000
KRTAP1-5   4420000 perm   9221 sec   (479 perm/sec)   p_kst 9.819005e-05   p_cons 9.791690e-01   p_joint 4.968326e-04

Joint ci ratio: 8.347802e-02	ci left: 4.767447e-04	ci right 5.184951e-04	k: 2203	n:4430000
Cons ci ratio: 2.716242e-04	ci left: 9.790397e-01	ci right 9.793059e-01	k: 4337737	n:4430000
KS ci ratio: 1.877247e-01	ci left: 8.918255e-05	ci right 1.078695e-04	k: 435	n:4430000
KRTAP1-5   4430000 perm   9260 sec   (478 perm/sec)   p_kst 9.819413e-05   p_cons 9.791731e-01   p_joint 4.972912e-04

Joint ci ratio: 8.338350e-02	ci left: 4.767736e-04	ci right 5.184769e-04	k: 2208	n:4440000
Cons ci ratio: 2.713328e-04	ci left: 9.790377e-01	ci right 9.793036e-01	k: 4347519	n:4440000
KS ci ratio: 1.875098e-01	ci left: 8.919633e-05	ci right 1.078623e-04	k: 436	n:4440000
KRTAP1-5   4440000 perm   9301 sec   (477 perm/sec)   p_kst 9.819820e-05   p_cons 9.791709e-01   p_joint 4.972973e-04

Joint ci ratio: 8.328929e-02	ci left: 4.768024e-04	ci right 5.184588e-04	k: 2213	n:4450000
Cons ci ratio: 2.710437e-04	ci left: 9.790354e-01	ci right 9.793010e-01	k: 4357300	n:4450000
KS ci ratio: 1.870821e-01	ci left: 8.942426e-05	ci right 1.080904e-04	k: 438	n:4450000
KRTAP1-5   4450000 perm   9341 sec   (476 perm/sec)   p_kst 9.842697e-05   p_cons 9.791685e-01   p_joint 4.973034e-04

Joint ci ratio: 8.313919e-02	ci left: 4.774897e-04	ci right 5.191273e-04	k: 2221	n:4460000
Cons ci ratio: 2.707571e-04	ci left: 9.790329e-01	ci right 9.792983e-01	k: 4367080	n:4460000
KS ci ratio: 1.866574e-01	ci left: 8.965121e-05	ci right 1.083174e-04	k: 440	n:4460000
KRTAP1-5   4460000 perm   9380 sec   (475 perm/sec)   p_kst 9.865471e-05   p_cons 9.791659e-01   p_joint 4.979821e-04

Joint ci ratio: 8.289697e-02	ci left: 4.792694e-04	ci right 5.209346e-04	k: 2234	n:4470000
Cons ci ratio: 2.704506e-04	ci left: 9.790336e-01	ci right 9.792986e-01	k: 4376874	n:4470000
KS ci ratio: 1.862356e-01	ci left: 8.987719e-05	ci right 1.085434e-04	k: 442	n:4470000
KRTAP1-5   4470000 perm   9420 sec   (475 perm/sec)   p_kst 9.888143e-05   p_cons 9.791664e-01   p_joint 4.997763e-04

Joint ci ratio: 8.278591e-02	ci left: 4.795112e-04	ci right 5.211388e-04	k: 2240	n:4480000
Cons ci ratio: 2.701702e-04	ci left: 9.790305e-01	ci right 9.792952e-01	k: 4386651	n:4480000
KS ci ratio: 1.862356e-01	ci left: 8.967657e-05	ci right 1.083011e-04	k: 442	n:4480000
KRTAP1-5   4480000 perm   9460 sec   (474 perm/sec)   p_kst 9.866071e-05   p_cons 9.791632e-01   p_joint 5.000000e-04

Joint ci ratio: 8.282294e-02	ci left: 4.780070e-04	ci right 5.195235e-04	k: 2238	n:4490000
Cons ci ratio: 2.698672e-04	ci left: 9.790309e-01	ci right 9.792954e-01	k: 4396444	n:4490000
KS ci ratio: 1.858166e-01	ci left: 8.990154e-05	ci right 1.085261e-04	k: 444	n:4490000
KRTAP1-5   4490000 perm   9499 sec   (473 perm/sec)   p_kst 9.888641e-05   p_cons 9.791635e-01   p_joint 4.984410e-04

Joint ci ratio: 8.267535e-02	ci left: 4.786858e-04	ci right 5.201836e-04	k: 2246	n:4500000
Cons ci ratio: 2.695886e-04	ci left: 9.790278e-01	ci right 9.792920e-01	k: 4406221	n:4500000
KS ci ratio: 1.854004e-01	ci left: 9.012556e-05	ci right 1.087500e-04	k: 446	n:4500000
KRTAP1-5   4500000 perm   9539 sec   (472 perm/sec)   p_kst 9.911111e-05   p_cons 9.791602e-01   p_joint 4.991111e-04

Joint ci ratio: 8.252854e-02	ci left: 4.793616e-04	ci right 5.208406e-04	k: 2254	n:4510000
Cons ci ratio: 2.693051e-04	ci left: 9.790256e-01	ci right 9.792895e-01	k: 4416002	n:4510000
KS ci ratio: 1.849870e-01	ci left: 9.034862e-05	ci right 1.089728e-04	k: 448	n:4510000
KRTAP1-5   4510000 perm   9580 sec   (471 perm/sec)   p_kst 9.933481e-05   p_cons 9.791579e-01   p_joint 4.997783e-04

Joint ci ratio: 8.245545e-02	ci left: 4.791677e-04	ci right 5.205915e-04	k: 2258	n:4520000
Cons ci ratio: 2.689729e-04	ci left: 9.790310e-01	ci right 9.792945e-01	k: 4425817	n:4520000
KS ci ratio: 1.849870e-01	ci left: 9.014874e-05	ci right 1.087317e-04	k: 448	n:4520000
KRTAP1-5   4520000 perm   9620 sec   (470 perm/sec)   p_kst 9.911504e-05   p_cons 9.791631e-01   p_joint 4.995575e-04

Joint ci ratio: 8.236435e-02	ci left: 4.791910e-04	ci right 5.205688e-04	k: 2263	n:4530000
Cons ci ratio: 2.686724e-04	ci left: 9.790316e-01	ci right 9.792949e-01	k: 4435611	n:4530000
KS ci ratio: 1.849870e-01	ci left: 8.994973e-05	ci right 1.084917e-04	k: 448	n:4530000
KRTAP1-5   4530000 perm   9660 sec   (469 perm/sec)   p_kst 9.889625e-05   p_cons 9.791636e-01   p_joint 4.995585e-04

Joint ci ratio: 8.229169e-02	ci left: 4.789984e-04	ci right 5.203214e-04	k: 2267	n:4540000
Cons ci ratio: 2.683671e-04	ci left: 9.790332e-01	ci right 9.792962e-01	k: 4445409	n:4540000
KS ci ratio: 1.847814e-01	ci left: 8.996167e-05	ci right 1.084832e-04	k: 449	n:4540000
KRTAP1-5   4540000 perm   9700 sec   (468 perm/sec)   p_kst 9.889868e-05   p_cons 9.791650e-01   p_joint 4.993392e-04

Joint ci ratio: 8.223734e-02	ci left: 4.785914e-04	ci right 5.198507e-04	k: 2270	n:4550000
Cons ci ratio: 2.680961e-04	ci left: 9.790297e-01	ci right 9.792924e-01	k: 4455184	n:4550000
KS ci ratio: 1.845764e-01	ci left: 8.997358e-05	ci right 1.084747e-04	k: 450	n:4550000
KRTAP1-5   4550000 perm   9741 sec   (467 perm/sec)   p_kst 9.890110e-05   p_cons 9.791613e-01   p_joint 4.989011e-04

Joint ci ratio: 8.212891e-02	ci left: 4.788307e-04	ci right 5.200535e-04	k: 2276	n:4560000
Cons ci ratio: 2.677942e-04	ci left: 9.790310e-01	ci right 9.792934e-01	k: 4464981	n:4560000
KS ci ratio: 1.845764e-01	ci left: 8.977626e-05	ci right 1.082368e-04	k: 450	n:4560000
KRTAP1-5   4560000 perm   9782 sec   (466 perm/sec)   p_kst 9.868421e-05   p_cons 9.791625e-01   p_joint 4.991228e-04

Joint ci ratio: 8.238273e-02	ci left: 4.747824e-04	ci right 5.157891e-04	k: 2262	n:4570000
Cons ci ratio: 2.674976e-04	ci left: 9.790316e-01	ci right 9.792938e-01	k: 4474775	n:4570000
KS ci ratio: 1.845765e-01	ci left: 8.957982e-05	ci right 1.080000e-04	k: 450	n:4570000
KRTAP1-5   4570000 perm   9824 sec   (465 perm/sec)   p_kst 9.846827e-05   p_cons 9.791630e-01   p_joint 4.949672e-04

Joint ci ratio: 8.221936e-02	ci left: 4.756704e-04	ci right 5.166685e-04	k: 2271	n:4580000
Cons ci ratio: 2.671949e-04	ci left: 9.790334e-01	ci right 9.792952e-01	k: 4484574	n:4580000
KS ci ratio: 1.841685e-01	ci left: 8.980076e-05	ci right 1.082210e-04	k: 452	n:4580000
KRTAP1-5   4580000 perm   9865 sec   (464 perm/sec)   p_kst 9.868996e-05   p_cons 9.791646e-01   p_joint 4.958515e-04

Joint ci ratio: 8.209298e-02	ci left: 4.761278e-04	ci right 5.170992e-04	k: 2278	n:4590000
Cons ci ratio: 2.668747e-04	ci left: 9.790380e-01	ci right 9.792995e-01	k: 4494386	n:4590000
KS ci ratio: 1.841686e-01	ci left: 8.960511e-05	ci right 1.079852e-04	k: 452	n:4590000
KRTAP1-5   4590000 perm   9906 sec   (463 perm/sec)   p_kst 9.847495e-05   p_cons 9.791691e-01   p_joint 4.962963e-04

Joint ci ratio: 8.200307e-02	ci left: 4.761574e-04	ci right 5.170843e-04	k: 2283	n:4600000
Cons ci ratio: 2.665726e-04	ci left: 9.790400e-01	ci right 9.793012e-01	k: 4504186	n:4600000
KS ci ratio: 1.837633e-01	ci left: 8.982508e-05	ci right 1.082052e-04	k: 454	n:4600000
KRTAP1-5   4600000 perm   9947 sec   (462 perm/sec)   p_kst 9.869565e-05   p_cons 9.791709e-01   p_joint 4.963043e-04

Joint ci ratio: 8.212913e-02	ci left: 4.736372e-04	ci right 5.144131e-04	k: 2276	n:4610000
Cons ci ratio: 2.662659e-04	ci left: 9.790428e-01	ci right 9.793037e-01	k: 4513990	n:4610000
KS ci ratio: 1.835617e-01	ci left: 8.983718e-05	ci right 1.081974e-04	k: 455	n:4610000
KRTAP1-5   4610000 perm   9988 sec   (462 perm/sec)   p_kst 9.869848e-05   p_cons 9.791735e-01   p_joint 4.937093e-04

Joint ci ratio: 8.200316e-02	ci left: 4.740961e-04	ci right 5.148459e-04	k: 2283	n:4620000
Cons ci ratio: 2.659547e-04	ci left: 9.790464e-01	ci right 9.793071e-01	k: 4523798	n:4620000
KS ci ratio: 1.829608e-01	ci left: 9.026229e-05	ci right 1.086423e-04	k: 458	n:4620000
KRTAP1-5   4620000 perm   10030 sec   (461 perm/sec)   p_kst 9.913420e-05   p_cons 9.791771e-01   p_joint 4.941558e-04

Joint ci ratio: 8.191355e-02	ci left: 4.741299e-04	ci right 5.148359e-04	k: 2288	n:4630000
Cons ci ratio: 2.656670e-04	ci left: 9.790466e-01	ci right 9.793070e-01	k: 4533590	n:4630000
KS ci ratio: 1.829608e-01	ci left: 9.006734e-05	ci right 1.084077e-04	k: 458	n:4630000
KRTAP1-5   4630000 perm   10071 sec   (460 perm/sec)   p_kst 9.892009e-05   p_cons 9.791771e-01   p_joint 4.941685e-04

Joint ci ratio: 8.184208e-02	ci left: 4.739525e-04	ci right 5.146061e-04	k: 2292	n:4640000
Cons ci ratio: 2.653872e-04	ci left: 9.790457e-01	ci right 9.793058e-01	k: 4543377	n:4640000
KS ci ratio: 1.827619e-01	ci left: 9.007888e-05	ci right 1.083994e-04	k: 459	n:4640000
KRTAP1-5   4640000 perm   10113 sec   (459 perm/sec)   p_kst 9.892241e-05   p_cons 9.791761e-01   p_joint 4.939655e-04

Joint ci ratio: 8.180644e-02	ci left: 4.733545e-04	ci right 5.139383e-04	k: 2294	n:4650000
Cons ci ratio: 2.651307e-04	ci left: 9.790414e-01	ci right 9.793012e-01	k: 4553148	n:4650000
KS ci ratio: 1.825635e-01	ci left: 9.009038e-05	ci right 1.083911e-04	k: 460	n:4650000
KRTAP1-5   4650000 perm   10155 sec   (458 perm/sec)   p_kst 9.892473e-05   p_cons 9.791716e-01   p_joint 4.933333e-04

Joint ci ratio: 8.177084e-02	ci left: 4.727592e-04	ci right 5.132734e-04	k: 2296	n:4660000
Cons ci ratio: 2.648206e-04	ci left: 9.790455e-01	ci right 9.793050e-01	k: 4562958	n:4660000
KS ci ratio: 1.825636e-01	ci left: 8.989706e-05	ci right 1.081585e-04	k: 460	n:4660000
KRTAP1-5   4660000 perm   10197 sec   (457 perm/sec)   p_kst 9.871245e-05   p_cons 9.791755e-01   p_joint 4.927039e-04

Joint ci ratio: 8.159338e-02	ci left: 4.738444e-04	ci right 5.143594e-04	k: 2306	n:4670000
Cons ci ratio: 2.645505e-04	ci left: 9.790435e-01	ci right 9.793028e-01	k: 4572740	n:4670000
KS ci ratio: 1.815814e-01	ci left: 9.072643e-05	ci right 1.090463e-04	k: 465	n:4670000
KRTAP1-5   4670000 perm   10239 sec   (456 perm/sec)   p_kst 9.957173e-05   p_cons 9.791734e-01   p_joint 4.937901e-04

Joint ci ratio: 8.148747e-02	ci left: 4.740878e-04	ci right 5.145685e-04	k: 2312	n:4680000
Cons ci ratio: 2.642396e-04	ci left: 9.790480e-01	ci right 9.793070e-01	k: 4582552	n:4680000
KS ci ratio: 1.811930e-01	ci left: 9.094052e-05	ci right 1.092601e-04	k: 467	n:4680000
KRTAP1-5   4680000 perm   10281 sec   (455 perm/sec)   p_kst 9.978632e-05   p_cons 9.791778e-01   p_joint 4.940171e-04

Joint ci ratio: 7.928867e-02	ci left: 5.002387e-04	ci right 5.417466e-04	k: 2442	n:4690000
Cons ci ratio: 2.371820e-04	ci left: 9.830033e-01	ci right 9.832367e-01	k: 4610834	n:4690000
KS ci ratio: 1.811930e-01	ci left: 9.074661e-05	ci right 1.090271e-04	k: 467	n:4690000
KRTAP1-5   4690000 perm   10323 sec   (454 perm/sec)   p_kst 9.957356e-05   p_cons 9.831203e-01   p_joint 5.206823e-04

Joint ci ratio: 7.943525e-02	ci left: 4.972975e-04	ci right 5.386411e-04	k: 2433	n:4700000
Cons ci ratio: 2.369436e-04	ci left: 9.830014e-01	ci right 9.832346e-01	k: 4620656	n:4700000
KS ci ratio: 1.808071e-01	ci left: 9.095979e-05	ci right 1.092399e-04	k: 469	n:4700000
KRTAP1-5   4700000 perm   10365 sec   (453 perm/sec)   p_kst 9.978723e-05   p_cons 9.831183e-01   p_joint 5.176596e-04

Joint ci ratio: 7.937007e-02	ci left: 4.970740e-04	ci right 5.383636e-04	k: 2437	n:4710000
Cons ci ratio: 2.367209e-04	ci left: 9.829975e-01	ci right 9.832304e-01	k: 4630468	n:4710000
KS ci ratio: 1.806150e-01	ci left: 9.096938e-05	ci right 1.092299e-04	k: 470	n:4710000
KRTAP1-5   4710000 perm   10407 sec   (453 perm/sec)   p_kst 9.978769e-05   p_cons 9.831142e-01   p_joint 5.174098e-04

Joint ci ratio: 7.928880e-02	ci left: 4.970592e-04	ci right 5.383033e-04	k: 2442	n:4720000
Cons ci ratio: 2.364702e-04	ci left: 9.829976e-01	ci right 9.832302e-01	k: 4640299	n:4720000
KS ci ratio: 1.804236e-01	ci left: 9.097894e-05	ci right 1.092199e-04	k: 471	n:4720000
KRTAP1-5   4720000 perm   10450 sec   (452 perm/sec)   p_kst 9.978814e-05   p_cons 9.831142e-01   p_joint 5.173729e-04

Joint ci ratio: 7.925639e-02	ci left: 4.964228e-04	ci right 5.375965e-04	k: 2444	n:4730000
Cons ci ratio: 2.361903e-04	ci left: 9.830019e-01	ci right 9.832343e-01	k: 4650150	n:4730000
KS ci ratio: 1.804236e-01	ci left: 9.078659e-05	ci right 1.089890e-04	k: 471	n:4730000
KRTAP1-5   4730000 perm   10491 sec   (451 perm/sec)   p_kst 9.957717e-05   p_cons 9.831184e-01   p_joint 5.167019e-04

Joint ci ratio: 7.917548e-02	ci left: 4.964094e-04	ci right 5.375380e-04	k: 2449	n:4740000
Cons ci ratio: 2.359473e-04	ci left: 9.830011e-01	ci right 9.832333e-01	k: 4659977	n:4740000
KS ci ratio: 1.804236e-01	ci left: 9.059506e-05	ci right 1.087591e-04	k: 471	n:4740000
KRTAP1-5   4740000 perm   10534 sec   (450 perm/sec)   p_kst 9.936709e-05   p_cons 9.831175e-01   p_joint 5.166667e-04

Joint ci ratio: 7.911094e-02	ci left: 4.961898e-04	ci right 5.372652e-04	k: 2453	n:4750000
Cons ci ratio: 2.356661e-04	ci left: 9.830059e-01	ci right 9.832378e-01	k: 4669830	n:4750000
KS ci ratio: 1.804236e-01	ci left: 9.040433e-05	ci right 1.085301e-04	k: 471	n:4750000
KRTAP1-5   4750000 perm   10577 sec   (449 perm/sec)   p_kst 9.915789e-05   p_cons 9.831221e-01   p_joint 5.164211e-04

Joint ci ratio: 7.903047e-02	ci left: 4.961770e-04	ci right 5.372076e-04	k: 2458	n:4760000
Cons ci ratio: 2.353964e-04	ci left: 9.830091e-01	ci right 9.832407e-01	k: 4679676	n:4760000
KS ci ratio: 1.804237e-01	ci left: 9.021441e-05	ci right 1.083021e-04	k: 471	n:4760000
KRTAP1-5   4760000 perm   10619 sec   (448 perm/sec)   p_kst 9.894958e-05   p_cons 9.831252e-01   p_joint 5.163866e-04

Joint ci ratio: 7.890220e-02	ci left: 4.967809e-04	ci right 5.377917e-04	k: 2466	n:4770000
Cons ci ratio: 2.351440e-04	ci left: 9.830100e-01	ci right 9.832414e-01	k: 4689511	n:4770000
KS ci ratio: 1.798530e-01	ci left: 9.062585e-05	ci right 1.087323e-04	k: 474	n:4770000
KRTAP1-5   4770000 perm   10662 sec   (447 perm/sec)   p_kst 9.937107e-05   p_cons 9.831260e-01   p_joint 5.169811e-04

Joint ci ratio: 7.885429e-02	ci left: 4.963568e-04	ci right 5.373066e-04	k: 2469	n:4780000
Cons ci ratio: 2.348820e-04	ci left: 9.830124e-01	ci right 9.832435e-01	k: 4699353	n:4780000
KS ci ratio: 1.796639e-01	ci left: 9.063605e-05	ci right 1.087234e-04	k: 475	n:4780000
KRTAP1-5   4780000 perm   10705 sec   (447 perm/sec)   p_kst 9.937238e-05   p_cons 9.831282e-01   p_joint 5.165272e-04

Joint ci ratio: 7.922424e-02	ci left: 4.906138e-04	ci right 5.312884e-04	k: 2446	n:4790000
Cons ci ratio: 2.346208e-04	ci left: 9.830148e-01	ci right 9.832456e-01	k: 4709195	n:4790000
KS ci ratio: 1.794755e-01	ci left: 9.064622e-05	ci right 1.087146e-04	k: 476	n:4790000
KRTAP1-5   4790000 perm   10746 sec   (446 perm/sec)   p_kst 9.937370e-05   p_cons 9.831305e-01   p_joint 5.106472e-04

Joint ci ratio: 7.914342e-02	ci left: 4.906127e-04	ci right 5.312438e-04	k: 2451	n:4800000
Cons ci ratio: 2.343930e-04	ci left: 9.830125e-01	ci right 9.832432e-01	k: 4719015	n:4800000
KS ci ratio: 1.792877e-01	ci left: 9.065635e-05	ci right 1.087058e-04	k: 477	n:4800000
KRTAP1-5   4800000 perm   10789 sec   (445 perm/sec)   p_kst 9.937500e-05   p_cons 9.831281e-01   p_joint 5.106250e-04

Joint ci ratio: 7.907896e-02	ci left: 4.904078e-04	ci right 5.309874e-04	k: 2455	n:4810000
Cons ci ratio: 2.341393e-04	ci left: 9.830140e-01	ci right 9.832444e-01	k: 4728853	n:4810000
KS ci ratio: 1.792877e-01	ci left: 9.046787e-05	ci right 1.084798e-04	k: 477	n:4810000
KRTAP1-5   4810000 perm   10831 sec   (444 perm/sec)   p_kst 9.916840e-05   p_cons 9.831295e-01   p_joint 5.103950e-04

Joint ci ratio: 7.906290e-02	ci left: 4.895938e-04	ci right 5.300973e-04	k: 2456	n:4820000
Cons ci ratio: 2.338719e-04	ci left: 9.830176e-01	ci right 9.832478e-01	k: 4738701	n:4820000
KS ci ratio: 1.792877e-01	ci left: 9.028018e-05	ci right 1.082547e-04	k: 477	n:4820000
KRTAP1-5   4820000 perm   10873 sec   (443 perm/sec)   p_kst 9.896266e-05   p_cons 9.831330e-01   p_joint 5.095436e-04

Joint ci ratio: 7.896653e-02	ci left: 4.897978e-04	ci right 5.302666e-04	k: 2462	n:4830000
Cons ci ratio: 2.336053e-04	ci left: 9.830212e-01	ci right 9.832511e-01	k: 4748549	n:4830000
KS ci ratio: 1.792877e-01	ci left: 9.009326e-05	ci right 1.080306e-04	k: 477	n:4830000
KRTAP1-5   4830000 perm   10915 sec   (443 perm/sec)   p_kst 9.875776e-05   p_cons 9.831364e-01   p_joint 5.097308e-04

Joint ci ratio: 7.891850e-02	ci left: 4.893934e-04	ci right 5.298031e-04	k: 2465	n:4840000
Cons ci ratio: 2.333426e-04	ci left: 9.830244e-01	ci right 9.832540e-01	k: 4758395	n:4840000
KS ci ratio: 1.789138e-01	ci left: 9.030182e-05	ci right 1.082391e-04	k: 479	n:4840000
KRTAP1-5   4840000 perm   10958 sec   (442 perm/sec)   p_kst 9.896694e-05   p_cons 9.831395e-01   p_joint 5.092975e-04

Joint ci ratio: 7.882266e-02	ci left: 4.895971e-04	ci right 5.299722e-04	k: 2471	n:4850000
Cons ci ratio: 2.331141e-04	ci left: 9.830228e-01	ci right 9.832521e-01	k: 4768218	n:4850000
KS ci ratio: 1.785422e-01	ci left: 9.050955e-05	ci right 1.084468e-04	k: 481	n:4850000
KRTAP1-5   4850000 perm   11000 sec   (441 perm/sec)   p_kst 9.917526e-05   p_cons 9.831377e-01   p_joint 5.094845e-04

Joint ci ratio: 7.877489e-02	ci left: 4.891948e-04	ci right 5.295112e-04	k: 2474	n:4860000
Cons ci ratio: 2.328819e-04	ci left: 9.830218e-01	ci right 9.832509e-01	k: 4778044	n:4860000
KS ci ratio: 1.783573e-01	ci left: 9.051989e-05	ci right 1.084386e-04	k: 482	n:4860000
KRTAP1-5   4860000 perm   11042 sec   (440 perm/sec)   p_kst 9.917695e-05   p_cons 9.831366e-01   p_joint 5.090535e-04

Joint ci ratio: 7.877493e-02	ci left: 4.881903e-04	ci right 5.284239e-04	k: 2474	n:4870000
Cons ci ratio: 2.326475e-04	ci left: 9.830212e-01	ci right 9.832501e-01	k: 4787872	n:4870000
KS ci ratio: 1.783573e-01	ci left: 9.033402e-05	ci right 1.082159e-04	k: 482	n:4870000
KRTAP1-5   4870000 perm   11085 sec   (439 perm/sec)   p_kst 9.897331e-05   p_cons 9.831359e-01   p_joint 5.080082e-04

Joint ci ratio: 7.871136e-02	ci left: 4.879934e-04	ci right 5.281769e-04	k: 2478	n:4880000
Cons ci ratio: 2.324325e-04	ci left: 9.830179e-01	ci right 9.832467e-01	k: 4797687	n:4880000
KS ci ratio: 1.781730e-01	ci left: 9.034468e-05	ci right 1.082082e-04	k: 483	n:4880000
KRTAP1-5   4880000 perm   11129 sec   (439 perm/sec)   p_kst 9.897541e-05   p_cons 9.831326e-01   p_joint 5.077869e-04

Joint ci ratio: 7.866379e-02	ci left: 4.875969e-04	ci right 5.277223e-04	k: 2481	n:4890000
Cons ci ratio: 2.321680e-04	ci left: 9.830219e-01	ci right 9.832503e-01	k: 4807537	n:4890000
KS ci ratio: 1.778060e-01	ci left: 9.055071e-05	ci right 1.084141e-04	k: 485	n:4890000
KRTAP1-5   4890000 perm   11171 sec   (438 perm/sec)   p_kst 9.918200e-05   p_cons 9.831364e-01   p_joint 5.073620e-04

Joint ci ratio: 7.861631e-02	ci left: 4.872020e-04	ci right 5.272696e-04	k: 2484	n:4900000
Cons ci ratio: 2.319529e-04	ci left: 9.830189e-01	ci right 9.832471e-01	k: 4817353	n:4900000
KS ci ratio: 1.778060e-01	ci left: 9.036591e-05	ci right 1.081929e-04	k: 485	n:4900000
KRTAP1-5   4900000 perm   11214 sec   (437 perm/sec)   p_kst 9.897959e-05   p_cons 9.831333e-01   p_joint 5.069388e-04

Joint ci ratio: 8.011407e-02	ci left: 4.678441e-04	ci right 5.070869e-04	k: 2392	n:4910000
Cons ci ratio: 2.317327e-04	ci left: 9.830167e-01	ci right 9.832447e-01	k: 4827173	n:4910000
KS ci ratio: 1.774412e-01	ci left: 9.057109e-05	ci right 1.083979e-04	k: 487	n:4910000
KRTAP1-5   4910000 perm   11259 sec   (436 perm/sec)   p_kst 9.918534e-05   p_cons 9.831310e-01   p_joint 4.871690e-04

Joint ci ratio: 8.004721e-02	ci left: 4.676899e-04	ci right 5.068856e-04	k: 2396	n:4920000
Cons ci ratio: 2.314720e-04	ci left: 9.830204e-01	ci right 9.832482e-01	k: 4837022	n:4920000
KS ci ratio: 1.772597e-01	ci left: 9.058123e-05	ci right 1.083899e-04	k: 488	n:4920000
KRTAP1-5   4920000 perm   11302 sec   (435 perm/sec)   p_kst 9.918699e-05   p_cons 9.831346e-01   p_joint 4.869919e-04

Joint ci ratio: 7.999718e-02	ci left: 4.673376e-04	ci right 5.064781e-04	k: 2399	n:4930000
Cons ci ratio: 2.312220e-04	ci left: 9.830227e-01	ci right 9.832502e-01	k: 4846864	n:4930000
KS ci ratio: 1.772597e-01	ci left: 9.039749e-05	ci right 1.081700e-04	k: 488	n:4930000
KRTAP1-5   4930000 perm   11345 sec   (435 perm/sec)   p_kst 9.898580e-05   p_cons 9.831367e-01   p_joint 4.866126e-04

Joint ci ratio: 7.993060e-02	ci left: 4.671851e-04	ci right 5.062787e-04	k: 2403	n:4940000
Cons ci ratio: 2.309715e-04	ci left: 9.830251e-01	ci right 9.832524e-01	k: 4856707	n:4940000
KS ci ratio: 1.770787e-01	ci left: 9.040796e-05	ci right 1.081624e-04	k: 489	n:4940000
KRTAP1-5   4940000 perm   11388 sec   (434 perm/sec)   p_kst 9.898785e-05   p_cons 9.831391e-01   p_joint 4.864372e-04

Joint ci ratio: 7.981447e-02	ci left: 4.676272e-04	ci right 5.066983e-04	k: 2410	n:4950000
Cons ci ratio: 2.307330e-04	ci left: 9.830260e-01	ci right 9.832530e-01	k: 4866542	n:4950000
KS ci ratio: 1.770788e-01	ci left: 9.022531e-05	ci right 1.079439e-04	k: 489	n:4950000
KRTAP1-5   4950000 perm   11432 sec   (433 perm/sec)   p_kst 9.878788e-05   p_cons 9.831398e-01   p_joint 4.868687e-04

Joint ci ratio: 7.973184e-02	ci left: 4.676724e-04	ci right 5.067049e-04	k: 2415	n:4960000
Cons ci ratio: 2.305288e-04	ci left: 9.830220e-01	ci right 9.832488e-01	k: 4876353	n:4960000
KS ci ratio: 1.768983e-01	ci left: 9.023609e-05	ci right 1.079368e-04	k: 490	n:4960000
KRTAP1-5   4960000 perm   11476 sec   (432 perm/sec)   p_kst 9.879032e-05   p_cons 9.831357e-01   p_joint 4.868952e-04

Joint ci ratio: 7.969888e-02	ci left: 4.671257e-04	ci right 5.060958e-04	k: 2417	n:4970000
Cons ci ratio: 2.302987e-04	ci left: 9.830218e-01	ci right 9.832484e-01	k: 4886183	n:4970000
KS ci ratio: 1.768984e-01	ci left: 9.005453e-05	ci right 1.077197e-04	k: 490	n:4970000
KRTAP1-5   4970000 perm   11520 sec   (431 perm/sec)   p_kst 9.859155e-05   p_cons 9.831354e-01   p_joint 4.863179e-04

Joint ci ratio: 7.966596e-02	ci left: 4.665813e-04	ci right 5.054892e-04	k: 2419	n:4980000
Cons ci ratio: 2.300358e-04	ci left: 9.830265e-01	ci right 9.832529e-01	k: 4896037	n:4980000
KS ci ratio: 1.767185e-01	ci left: 9.006561e-05	ci right 1.077130e-04	k: 491	n:4980000
KRTAP1-5   4980000 perm   11564 sec   (431 perm/sec)   p_kst 9.859438e-05   p_cons 9.831400e-01   p_joint 4.857430e-04

Joint ci ratio: 7.961664e-02	ci left: 4.662355e-04	ci right 5.050894e-04	k: 2422	n:4990000
Cons ci ratio: 2.298127e-04	ci left: 9.830255e-01	ci right 9.832517e-01	k: 4905863	n:4990000
KS ci ratio: 1.763604e-01	ci left: 9.026821e-05	ci right 1.079157e-04	k: 493	n:4990000
KRTAP1-5   4990000 perm   11607 sec   (430 perm/sec)   p_kst 9.879760e-05   p_cons 9.831389e-01   p_joint 4.853707e-04

Joint ci ratio: 7.955101e-02	ci left: 4.660871e-04	ci right 5.048951e-04	k: 2426	n:5000000
Cons ci ratio: 2.295778e-04	ci left: 9.830264e-01	ci right 9.832523e-01	k: 4915698	n:5000000
KS ci ratio: 1.763604e-01	ci left: 9.008767e-05	ci right 1.076998e-04	k: 493	n:5000000
KRTAP1-5   5000000 perm   11651 sec   (429 perm/sec)   p_kst 9.860000e-05   p_cons 9.831396e-01   p_joint 4.852000e-04

Outputting figure to mutsig2_images.part000000000093/KRTAP1-5.7_529_5000000_9.86e-05_0.98314_0.0004852.png
                gene_name: KRTAP1-5
               theta_stop: 0.18 
                    nperm: 5000000 
                     p_ks: 9.86e-05 
        ci_ks_bounds_left: 9.01e-05 
       ci_ks_bounds_right: 0.00011 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.00049 
     ci_joint_bounds_left: 0.00047 
    ci_joint_bounds_right: 0.00050 

Current progress: 22 percent done.
KRT82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
Cons ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
KS ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
KRT82   10000 perm   2 sec   (5473 perm/sec)   p_kst 4.221000e-01   p_cons 1.420000e-02   p_joint 8.480000e-02

Joint ci ratio: 1.098571e-01	ci left: 5.655298e-02	ci right 6.317570e-02	k: 1196	n:20000
Cons ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
KS ci ratio: 3.243689e-02	ci left: 4.151421e-01	ci right 4.288806e-01	k: 8440	n:20000
KRT82   20000 perm   4 sec   (4862 perm/sec)   p_kst 4.220000e-01   p_cons 1.440000e-02   p_joint 5.980000e-02

Joint ci ratio: 8.710876e-02	ci left: 6.047233e-02	ci right 6.601262e-02	k: 1896	n:30000
Cons ci ratio: 1.846502e-01	ci left: 1.343225e-02	ci right 1.619621e-02	k: 443	n:30000
KS ci ratio: 2.649990e-02	ci left: 4.161363e-01	ci right 4.273455e-01	k: 12652	n:30000
KRT82   30000 perm   6 sec   (4659 perm/sec)   p_kst 4.217333e-01   p_cons 1.476667e-02   p_joint 6.320000e-02

Joint ci ratio: 7.666478e-02	ci left: 5.899318e-02	ci right 6.372075e-02	k: 2453	n:40000
Cons ci ratio: 1.601873e-01	ci left: 1.356744e-02	ci right 1.595376e-02	k: 589	n:40000
KS ci ratio: 2.287169e-02	ci left: 4.185511e-01	ci right 4.282600e-01	k: 16936	n:40000
KRT82   40000 perm   9 sec   (4517 perm/sec)   p_kst 4.234000e-01   p_cons 1.472500e-02   p_joint 6.132500e-02

Joint ci ratio: 7.563712e-02	ci left: 4.904850e-02	ci right 5.292384e-02	k: 2548	n:50000
Cons ci ratio: 1.471199e-01	ci left: 1.296919e-02	ci right 1.504780e-02	k: 699	n:50000
KS ci ratio: 2.042293e-02	ci left: 4.198825e-01	ci right 4.285663e-01	k: 21211	n:50000
KRT82   50000 perm   11 sec   (4393 perm/sec)   p_kst 4.242200e-01   p_cons 1.398000e-02   p_joint 5.096000e-02

Joint ci ratio: 6.479090e-02	ci left: 5.563397e-02	ci right 5.937564e-02	k: 3449	n:60000
Cons ci ratio: 1.342207e-01	ci left: 1.307513e-02	ci right 1.497231e-02	k: 840	n:60000
KS ci ratio: 1.871004e-02	ci left: 4.185264e-01	ci right 4.264477e-01	k: 25349	n:60000
KRT82   60000 perm   14 sec   (4293 perm/sec)   p_kst 4.224833e-01   p_cons 1.400000e-02   p_joint 5.748333e-02

Joint ci ratio: 5.982723e-02	ci left: 5.605428e-02	ci right 5.952534e-02	k: 4044	n:70000
Cons ci ratio: 1.228849e-01	ci left: 1.344738e-02	ci right 1.522179e-02	k: 1002	n:70000
KS ci ratio: 1.732263e-02	ci left: 4.188084e-01	ci right 4.261409e-01	k: 29573	n:70000
KRT82   70000 perm   17 sec   (4207 perm/sec)   p_kst 4.224714e-01   p_cons 1.431429e-02   p_joint 5.777143e-02

Joint ci ratio: 5.703740e-02	ci left: 5.415765e-02	ci right 5.734966e-02	k: 4459	n:80000
Cons ci ratio: 1.144072e-01	ci left: 1.363445e-02	ci right 1.530103e-02	k: 1156	n:80000
KS ci ratio: 1.619589e-02	ci left: 4.192860e-01	ci right 4.261446e-01	k: 33817	n:80000
KRT82   80000 perm   19 sec   (4124 perm/sec)   p_kst 4.227125e-01   p_cons 1.445000e-02   p_joint 5.573750e-02

Joint ci ratio: 5.760574e-02	ci left: 4.752197e-02	ci right 5.035163e-02	k: 4403	n:90000
Cons ci ratio: 1.089144e-01	ci left: 1.341553e-02	ci right 1.497157e-02	k: 1276	n:90000
KS ci ratio: 1.524852e-02	ci left: 4.201578e-01	ci right 4.266249e-01	k: 38105	n:90000
KRT82   90000 perm   22 sec   (4045 perm/sec)   p_kst 4.233889e-01   p_cons 1.417778e-02   p_joint 4.892222e-02

Joint ci ratio: 5.357795e-02	ci left: 4.944704e-02	ci right 5.217909e-02	k: 5080	n:100000
Cons ci ratio: 1.020876e-01	ci left: 1.378770e-02	ci right 1.528065e-02	k: 1452	n:100000
KS ci ratio: 1.445536e-02	ci left: 4.206845e-01	ci right 4.268199e-01	k: 42375	n:100000
KRT82   100000 perm   25 sec   (3968 perm/sec)   p_kst 4.237500e-01   p_cons 1.452000e-02   p_joint 5.080000e-02

Joint ci ratio: 4.887640e-02	ci left: 5.389358e-02	ci right 5.660265e-02	k: 6076	n:110000
Cons ci ratio: 9.713034e-02	ci left: 1.388171e-02	ci right 1.530769e-02	k: 1604	n:110000
KS ci ratio: 1.378639e-02	ci left: 4.206956e-01	ci right 4.265448e-01	k: 46598	n:110000
KRT82   110000 perm   28 sec   (3901 perm/sec)   p_kst 4.236182e-01   p_cons 1.458182e-02   p_joint 5.523636e-02

Outputting figure to mutsig2_images.part000000000093/KRT82.6_1578_110000_0.42362_0.014582_0.055236.png
                gene_name: KRT82
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 23 percent done.
KRTAP10-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.971088e-02	ci left: 7.901975e-01	ci right 8.060285e-01	k: 7982	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
KRTAP10-6   10000 perm   2 sec   (5717 perm/sec)   p_kst 8.995000e-01   p_cons 7.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRTAP10-6.6_1102_10000_0.8995_0.7982_1.png
                gene_name: KRTAP10-6
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
KRBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
Cons ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
KRBA1   10000 perm   2 sec   (5080 perm/sec)   p_kst 6.626000e-01   p_cons 2.730000e-02   p_joint 6.560000e-02

Joint ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
Cons ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
KS ci ratio: 1.992279e-02	ci left: 6.527340e-01	ci right 6.659196e-01	k: 13187	n:20000
KRBA1   20000 perm   4 sec   (4535 perm/sec)   p_kst 6.593500e-01   p_cons 2.320000e-02   p_joint 9.920000e-02

Joint ci ratio: 6.733577e-02	ci left: 9.807193e-02	ci right 1.049388e-01	k: 3044	n:30000
Cons ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
KS ci ratio: 1.623875e-02	ci left: 6.547414e-01	ci right 6.654942e-01	k: 19804	n:30000
KRBA1   30000 perm   7 sec   (4289 perm/sec)   p_kst 6.601333e-01   p_cons 2.596667e-02   p_joint 1.014667e-01

Joint ci ratio: 5.802087e-02	ci left: 9.944539e-02	ci right 1.054125e-01	k: 4096	n:40000
Cons ci ratio: 1.192575e-01	ci left: 2.472946e-02	ci right 2.788981e-02	k: 1051	n:40000
KS ci ratio: 1.403376e-02	ci left: 6.564122e-01	ci right 6.657144e-01	k: 26443	n:40000
KRBA1   40000 perm   10 sec   (4164 perm/sec)   p_kst 6.610750e-01   p_cons 2.627500e-02   p_joint 1.024000e-01

Joint ci ratio: 4.930777e-02	ci left: 1.094462e-01	ci right 1.149990e-01	k: 5610	n:50000
Cons ci ratio: 1.053179e-01	ci left: 2.553835e-02	ci right 2.839692e-02	k: 1347	n:50000
KS ci ratio: 1.253416e-02	ci left: 6.575537e-01	ci right 6.658676e-01	k: 33086	n:50000
KRBA1   50000 perm   12 sec   (4060 perm/sec)   p_kst 6.617200e-01   p_cons 2.694000e-02   p_joint 1.122000e-01

Joint ci ratio: 4.651226e-02	ci left: 1.033826e-01	ci right 1.083222e-01	k: 6350	n:60000
Cons ci ratio: 9.671480e-02	ci left: 2.535962e-02	ci right 2.795311e-02	k: 1598	n:60000
KS ci ratio: 1.146989e-02	ci left: 6.568286e-01	ci right 6.644225e-01	k: 39638	n:60000
KRBA1   60000 perm   15 sec   (3978 perm/sec)   p_kst 6.606333e-01   p_cons 2.663333e-02   p_joint 1.058333e-01

Outputting figure to mutsig2_images.part000000000093/KRBA1.5_3156_60000_0.66063_0.026633_0.10583.png
                gene_name: KRBA1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 26 percent done.
KRT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
KRT13   10000 perm   2 sec   (5845 perm/sec)   p_kst 1.787000e-01   p_cons 8.599000e-01   p_joint 2.721000e-01

Outputting figure to mutsig2_images.part000000000093/KRT13.5_1409_10000_0.1787_0.8599_0.2721.png
                gene_name: KRT13
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 27 percent done.
KRT25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
KRT25   10000 perm   2 sec   (6339 perm/sec)   p_kst 5.120000e-02   p_cons 7.944000e-01   p_joint 1.251000e-01

Joint ci ratio: 7.681736e-02	ci left: 1.107573e-01	ci right 1.196549e-01	k: 2303	n:20000
Cons ci ratio: 1.417498e-02	ci left: 7.870146e-01	ci right 7.983002e-01	k: 15854	n:20000
KS ci ratio: 1.217194e-01	ci left: 4.629176e-02	ci right 5.234013e-02	k: 985	n:20000
KRT25   20000 perm   4 sec   (5549 perm/sec)   p_kst 4.925000e-02   p_cons 7.927000e-01   p_joint 1.151500e-01

Joint ci ratio: 6.716406e-02	ci left: 9.853160e-02	ci right 1.054124e-01	k: 3058	n:30000
Cons ci ratio: 1.125961e-02	ci left: 7.970415e-01	ci right 8.061000e-01	k: 24048	n:30000
KS ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
KRT25   30000 perm   6 sec   (5259 perm/sec)   p_kst 4.793333e-02   p_cons 8.016000e-01   p_joint 1.019333e-01

Joint ci ratio: 5.845901e-02	ci left: 9.808824e-02	ci right 1.040198e-01	k: 4041	n:40000
Cons ci ratio: 9.754903e-03	ci left: 7.975316e-01	ci right 8.053746e-01	k: 32059	n:40000
KS ci ratio: 8.454720e-02	ci left: 4.883972e-02	ci right 5.317576e-02	k: 2039	n:40000
KRT25   40000 perm   8 sec   (5058 perm/sec)   p_kst 5.097500e-02   p_cons 8.014750e-01   p_joint 1.010250e-01

Outputting figure to mutsig2_images.part000000000093/KRT25.5_1385_40000_0.050975_0.80148_0.10103.png
                gene_name: KRT25
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 28 percent done.
KRT26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
Cons ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
KS ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
KRT26   10000 perm   2 sec   (5539 perm/sec)   p_kst 2.016000e-01   p_cons 1.077000e-01   p_joint 1.373000e-01

Joint ci ratio: 7.180058e-02	ci left: 1.250236e-01	ci right 1.343844e-01	k: 2593	n:20000
Cons ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
KS ci ratio: 5.567144e-02	ci left: 1.930901e-01	ci right 2.041976e-01	k: 3972	n:20000
KRT26   20000 perm   4 sec   (4954 perm/sec)   p_kst 1.986000e-01   p_cons 1.128500e-01   p_joint 1.296500e-01

Outputting figure to mutsig2_images.part000000000093/KRT26.5_1439_20000_0.1986_0.11285_0.12965.png
                gene_name: KRT26
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 30 percent done.
KRT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
Cons ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KRT7   10000 perm   2 sec   (6320 perm/sec)   p_kst 5.030000e-01   p_cons 9.230000e-02   p_joint 2.567000e-01

Joint ci ratio: 4.547339e-02	ci left: 2.646997e-01	ci right 2.770670e-01	k: 5417	n:20000
Cons ci ratio: 8.773658e-02	ci left: 8.675464e-02	ci right 9.476480e-02	k: 1814	n:20000
KS ci ratio: 2.774423e-02	ci left: 4.925460e-01	ci right 5.064542e-01	k: 9990	n:20000
KRT7   20000 perm   4 sec   (5504 perm/sec)   p_kst 4.995000e-01   p_cons 9.070000e-02   p_joint 2.708500e-01

Outputting figure to mutsig2_images.part000000000093/KRT7.5_1446_20000_0.4995_0.0907_0.27085.png
                gene_name: KRT7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
KRT72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KRT72   10000 perm   2 sec   (5860 perm/sec)   p_kst 2.924000e-01   p_cons 8.800000e-03   p_joint 5.940000e-02

Joint ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
Cons ci ratio: 3.096304e-01	ci left: 6.720018e-03	ci right 9.226206e-03	k: 158	n:20000
KS ci ratio: 4.311436e-02	ci left: 2.861015e-01	ci right 2.987588e-01	k: 5848	n:20000
KRT72   20000 perm   4 sec   (5167 perm/sec)   p_kst 2.924000e-01   p_cons 7.900000e-03   p_joint 3.530000e-02

Joint ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
Cons ci ratio: 2.370412e-01	ci left: 7.962418e-03	ci right 1.013426e-02	k: 270	n:30000
KS ci ratio: 3.527237e-02	ci left: 2.864607e-01	ci right 2.967797e-01	k: 8748	n:30000
KRT72   30000 perm   6 sec   (4906 perm/sec)   p_kst 2.916000e-01   p_cons 9.000000e-03   p_joint 2.216667e-02

Joint ci ratio: 1.077553e-01	ci left: 3.029677e-02	ci right 3.377160e-02	k: 1280	n:40000
Cons ci ratio: 2.203457e-01	ci left: 6.984896e-03	ci right 8.737684e-03	k: 313	n:40000
KS ci ratio: 3.049942e-02	ci left: 2.877958e-01	ci right 2.967344e-01	k: 11690	n:40000
KRT72   40000 perm   8 sec   (4749 perm/sec)   p_kst 2.922500e-01   p_cons 7.825000e-03   p_joint 3.200000e-02

Joint ci ratio: 9.202337e-02	ci left: 3.340617e-02	ci right 3.664810e-02	k: 1750	n:50000
Cons ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
KS ci ratio: 2.720421e-02	ci left: 2.894111e-01	ci right 2.974129e-01	k: 14670	n:50000
KRT72   50000 perm   11 sec   (4613 perm/sec)   p_kst 2.934000e-01   p_cons 7.980000e-03   p_joint 3.500000e-02

Joint ci ratio: 9.020044e-02	ci left: 2.913848e-02	ci right 3.190717e-02	k: 1830	n:60000
Cons ci ratio: 1.774602e-01	ci left: 7.350527e-03	ci right 8.797663e-03	k: 483	n:60000
KS ci ratio: 2.480124e-02	ci left: 2.903065e-01	ci right 2.976135e-01	k: 17637	n:60000
KRT72   60000 perm   13 sec   (4478 perm/sec)   p_kst 2.939500e-01   p_cons 8.050000e-03   p_joint 3.050000e-02

Joint ci ratio: 8.474851e-02	ci left: 2.839885e-02	ci right 3.092605e-02	k: 2075	n:70000
Cons ci ratio: 1.641012e-01	ci left: 7.421892e-03	ci right 8.762223e-03	k: 565	n:70000
KS ci ratio: 2.300318e-02	ci left: 2.898292e-01	ci right 2.965880e-01	k: 20524	n:70000
KRT72   70000 perm   16 sec   (4377 perm/sec)   p_kst 2.932000e-01   p_cons 8.071429e-03   p_joint 2.964286e-02

Joint ci ratio: 7.681662e-02	ci left: 3.031269e-02	ci right 3.274644e-02	k: 2521	n:80000
Cons ci ratio: 1.489129e-01	ci left: 7.947696e-03	ci right 9.238321e-03	k: 686	n:80000
KS ci ratio: 2.148520e-02	ci left: 2.906698e-01	ci right 2.969952e-01	k: 23506	n:80000
KRT72   80000 perm   19 sec   (4283 perm/sec)   p_kst 2.938250e-01   p_cons 8.575000e-03   p_joint 3.151250e-02

Joint ci ratio: 7.291918e-02	ci left: 2.997549e-02	ci right 3.225486e-02	k: 2799	n:90000
Cons ci ratio: 1.335800e-01	ci left: 8.844316e-03	ci right 1.012093e-02	k: 852	n:90000
KS ci ratio: 2.025719e-02	ci left: 2.908363e-01	ci right 2.967992e-01	k: 26443	n:90000
KRT72   90000 perm   21 sec   (4196 perm/sec)   p_kst 2.938111e-01   p_cons 9.466667e-03   p_joint 3.110000e-02

Joint ci ratio: 7.424527e-02	ci left: 2.611216e-02	ci right 2.813539e-02	k: 2711	n:100000
Cons ci ratio: 1.265082e-01	ci left: 8.908035e-03	ci right 1.012067e-02	k: 950	n:100000
KS ci ratio: 1.919879e-02	ci left: 2.913966e-01	ci right 2.970553e-01	k: 29422	n:100000
KRT72   100000 perm   24 sec   (4116 perm/sec)   p_kst 2.942200e-01   p_cons 9.500000e-03   p_joint 2.711000e-02

Joint ci ratio: 6.435680e-02	ci left: 3.157624e-02	ci right 3.368486e-02	k: 3588	n:110000
Cons ci ratio: 1.204525e-01	ci left: 8.961627e-03	ci right 1.011900e-02	k: 1048	n:110000
KS ci ratio: 1.828623e-02	ci left: 2.919614e-01	ci right 2.973586e-01	k: 32412	n:110000
KRT72   110000 perm   27 sec   (4040 perm/sec)   p_kst 2.946545e-01   p_cons 9.527273e-03   p_joint 3.261818e-02

Joint ci ratio: 6.428122e-02	ci left: 2.909125e-02	ci right 3.103155e-02	k: 3606	n:120000
Cons ci ratio: 1.210257e-01	ci left: 8.141880e-03	ci right 9.198737e-03	k: 1039	n:120000
KS ci ratio: 1.733853e-02	ci left: 2.961195e-01	ci right 3.013069e-01	k: 35845	n:120000
KRT72   120000 perm   30 sec   (3967 perm/sec)   p_kst 2.987083e-01   p_cons 8.658333e-03   p_joint 3.005000e-02

Joint ci ratio: 6.495292e-02	ci left: 2.636789e-02	ci right 2.814559e-02	k: 3542	n:130000
Cons ci ratio: 1.158979e-01	ci left: 8.217256e-03	ci right 9.235609e-03	k: 1133	n:130000
KS ci ratio: 1.666204e-02	ci left: 2.961283e-01	ci right 3.011115e-01	k: 38820	n:130000
KRT72   130000 perm   33 sec   (3897 perm/sec)   p_kst 2.986154e-01   p_cons 8.715385e-03   p_joint 2.724615e-02

Joint ci ratio: 6.184878e-02	ci left: 2.702948e-02	ci right 2.876157e-02	k: 3904	n:140000
Cons ci ratio: 1.106910e-01	ci left: 8.386864e-03	ci right 9.376495e-03	k: 1242	n:140000
KS ci ratio: 1.605683e-02	ci left: 2.961963e-01	ci right 3.009978e-01	k: 41803	n:140000
KRT72   140000 perm   37 sec   (3829 perm/sec)   p_kst 2.985929e-01   p_cons 8.871429e-03   p_joint 2.788571e-02

Joint ci ratio: 6.105443e-02	ci left: 2.592943e-02	ci right 2.756893e-02	k: 4011	n:150000
Cons ci ratio: 1.072136e-01	ci left: 8.359504e-03	ci right 9.312961e-03	k: 1324	n:150000
KS ci ratio: 1.548993e-02	ci left: 2.968833e-01	ci right 3.015245e-01	k: 44880	n:150000
KRT72   150000 perm   40 sec   (3765 perm/sec)   p_kst 2.992000e-01   p_cons 8.826667e-03   p_joint 2.674000e-02

Joint ci ratio: 6.112248e-02	ci left: 2.429590e-02	ci right 2.583387e-02	k: 4009	n:160000
Cons ci ratio: 1.031970e-01	ci left: 8.476045e-03	ci right 9.404380e-03	k: 1429	n:160000
KS ci ratio: 1.499383e-02	ci left: 2.970753e-01	ci right 3.015695e-01	k: 47891	n:160000
KRT72   160000 perm   43 sec   (3706 perm/sec)   p_kst 2.993188e-01   p_cons 8.931250e-03   p_joint 2.505625e-02

Joint ci ratio: 6.049232e-02	ci left: 2.337617e-02	ci right 2.484012e-02	k: 4097	n:170000
Cons ci ratio: 9.966592e-02	ci left: 8.567988e-03	ci right 9.472404e-03	k: 1532	n:170000
KS ci ratio: 1.456009e-02	ci left: 2.967420e-01	ci right 3.011001e-01	k: 50816	n:170000
KRT72   170000 perm   47 sec   (3643 perm/sec)   p_kst 2.989176e-01   p_cons 9.011765e-03   p_joint 2.410000e-02

Outputting figure to mutsig2_images.part000000000093/KRT72.5_1572_170000_0.29892_0.0090118_0.0241.png
                gene_name: KRT72
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.0090 
      ci_cons_bounds_left: 0.0086 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 32 percent done.
KRT74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
KRT74   10000 perm   2 sec   (5510 perm/sec)   p_kst 3.642000e-01   p_cons 1.100000e-03   p_joint 1.500000e-02

Joint ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 3.664354e-02	ci left: 3.572273e-01	ci right 3.706123e-01	k: 7278	n:20000
KRT74   20000 perm   4 sec   (4892 perm/sec)   p_kst 3.639000e-01   p_cons 1.100000e-03   p_joint 5.850000e-03

Joint ci ratio: 2.159224e-01	ci left: 9.692830e-03	ci right 1.206999e-02	k: 325	n:30000
Cons ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
KS ci ratio: 2.937660e-02	ci left: 3.669586e-01	ci right 3.779328e-01	k: 11173	n:30000
KRT74   30000 perm   6 sec   (4644 perm/sec)   p_kst 3.724333e-01   p_cons 1.066667e-03   p_joint 1.083333e-02

Joint ci ratio: 2.020189e-01	ci left: 8.382601e-03	ci right 1.028965e-02	k: 372	n:40000
Cons ci ratio: 5.906298e-01	ci left: 7.780887e-04	ci right 1.447748e-03	k: 43	n:40000
KS ci ratio: 2.559347e-02	ci left: 3.649166e-01	ci right 3.744023e-01	k: 14786	n:40000
KRT74   40000 perm   9 sec   (4489 perm/sec)   p_kst 3.696500e-01   p_cons 1.075000e-03   p_joint 9.300000e-03

Joint ci ratio: 2.049964e-01	ci left: 6.515609e-03	ci right 8.022448e-03	k: 362	n:50000
Cons ci ratio: 5.282766e-01	ci left: 8.114302e-04	ci right 1.408934e-03	k: 54	n:50000
KS ci ratio: 2.282850e-02	ci left: 3.667035e-01	ci right 3.751915e-01	k: 18547	n:50000
KRT74   50000 perm   11 sec   (4377 perm/sec)   p_kst 3.709400e-01   p_cons 1.080000e-03   p_joint 7.240000e-03

Joint ci ratio: 1.958375e-01	ci left: 5.983579e-03	ci right 7.298158e-03	k: 397	n:60000
Cons ci ratio: 4.822492e-01	ci left: 8.361902e-04	ci right 1.380592e-03	k: 65	n:60000
KS ci ratio: 2.088166e-02	ci left: 3.661349e-01	ci right 3.738777e-01	k: 22200	n:60000
KRT74   60000 perm   14 sec   (4275 perm/sec)   p_kst 3.700000e-01   p_cons 1.083333e-03   p_joint 6.616667e-03

Joint ci ratio: 2.010765e-01	ci left: 4.856971e-03	ci right 5.956068e-03	k: 377	n:70000
Cons ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
KS ci ratio: 1.938083e-02	ci left: 3.652669e-01	ci right 3.724297e-01	k: 25819	n:70000
KRT74   70000 perm   17 sec   (4186 perm/sec)   p_kst 3.688429e-01   p_cons 1.071429e-03   p_joint 5.385714e-03

Joint ci ratio: 2.124523e-01	ci left: 3.787342e-03	ci right 4.699187e-03	k: 338	n:80000
Cons ci ratio: 4.106913e-01	ci left: 9.047269e-04	ci right 1.382638e-03	k: 90	n:80000
KS ci ratio: 1.815179e-02	ci left: 3.649187e-01	ci right 3.716158e-01	k: 29461	n:80000
KRT74   80000 perm   19 sec   (4103 perm/sec)   p_kst 3.682625e-01   p_cons 1.125000e-03   p_joint 4.225000e-03

Joint ci ratio: 1.432152e-01	ci left: 7.664023e-03	ci right 8.856887e-03	k: 742	n:90000
Cons ci ratio: 3.879157e-01	ci left: 9.141585e-04	ci right 1.363437e-03	k: 101	n:90000
KS ci ratio: 1.711112e-02	ci left: 3.651808e-01	ci right 3.714944e-01	k: 33150	n:90000
KRT74   90000 perm   22 sec   (4025 perm/sec)   p_kst 3.683333e-01   p_cons 1.122222e-03   p_joint 8.244444e-03

Joint ci ratio: 1.386496e-01	ci left: 7.379916e-03	ci right 8.488910e-03	k: 792	n:100000
Cons ci ratio: 3.701959e-01	ci left: 9.132186e-04	ci right 1.336575e-03	k: 111	n:100000
KS ci ratio: 1.622063e-02	ci left: 3.656986e-01	ci right 3.716890e-01	k: 36869	n:100000
KRT74   100000 perm   25 sec   (3959 perm/sec)   p_kst 3.686900e-01   p_cons 1.110000e-03   p_joint 7.920000e-03

Joint ci ratio: 1.398594e-01	ci left: 6.594761e-03	ci right 7.595128e-03	k: 779	n:110000
Cons ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
KS ci ratio: 1.544103e-02	ci left: 3.665831e-01	ci right 3.722966e-01	k: 40638	n:110000
KRT74   110000 perm   28 sec   (3890 perm/sec)   p_kst 3.694364e-01   p_cons 1.090909e-03   p_joint 7.081818e-03

Joint ci ratio: 1.366752e-01	ci left: 6.342808e-03	ci right 7.281264e-03	k: 816	n:120000
Cons ci ratio: 3.423036e-01	ci left: 9.051991e-04	ci right 1.286240e-03	k: 130	n:120000
KS ci ratio: 1.478008e-02	ci left: 3.668180e-01	ci right 3.722883e-01	k: 44346	n:120000
KRT74   120000 perm   31 sec   (3829 perm/sec)   p_kst 3.695500e-01   p_cons 1.083333e-03   p_joint 6.800000e-03

Joint ci ratio: 1.606069e-01	ci left: 4.195094e-03	ci right 4.934966e-03	k: 592	n:130000
Cons ci ratio: 3.335141e-01	ci left: 8.848448e-04	ci right 1.245699e-03	k: 137	n:130000
KS ci ratio: 1.420858e-02	ci left: 3.666526e-01	ci right 3.719071e-01	k: 48006	n:130000
KRT74   130000 perm   35 sec   (3763 perm/sec)   p_kst 3.692769e-01   p_cons 1.053846e-03   p_joint 4.553846e-03

Joint ci ratio: 1.591575e-01	ci left: 3.970834e-03	ci right 4.664228e-03	k: 603	n:140000
Cons ci ratio: 3.264975e-01	ci left: 8.609466e-04	ci right 1.203119e-03	k: 143	n:140000
KS ci ratio: 1.368519e-02	ci left: 3.669708e-01	ci right 3.720346e-01	k: 51730	n:140000
KRT74   140000 perm   38 sec   (3706 perm/sec)   p_kst 3.695000e-01   p_cons 1.021429e-03   p_joint 4.307143e-03

Joint ci ratio: 1.618941e-01	ci left: 3.578075e-03	ci right 4.214671e-03	k: 583	n:150000
Cons ci ratio: 3.136869e-01	ci left: 8.771266e-04	ci right 1.209313e-03	k: 155	n:150000
KS ci ratio: 1.321625e-02	ci left: 3.672297e-01	ci right 3.721220e-01	k: 55451	n:150000
KRT74   150000 perm   41 sec   (3648 perm/sec)   p_kst 3.696733e-01   p_cons 1.033333e-03   p_joint 3.886667e-03

Joint ci ratio: 1.576365e-01	ci left: 3.546445e-03	ci right 4.159249e-03	k: 615	n:160000
Cons ci ratio: 3.050132e-01	ci left: 8.741905e-04	ci right 1.194334e-03	k: 164	n:160000
KS ci ratio: 1.278334e-02	ci left: 3.677896e-01	ci right 3.725276e-01	k: 59225	n:160000
KRT74   160000 perm   45 sec   (3590 perm/sec)   p_kst 3.701563e-01   p_cons 1.025000e-03   p_joint 3.843750e-03

Joint ci ratio: 1.561354e-01	ci left: 3.405628e-03	ci right 3.987970e-03	k: 627	n:170000
Cons ci ratio: 2.970214e-01	ci left: 8.717112e-04	ci right 1.181006e-03	k: 173	n:170000
KS ci ratio: 1.239941e-02	ci left: 3.679451e-01	ci right 3.725417e-01	k: 62941	n:170000
KRT74   170000 perm   48 sec   (3534 perm/sec)   p_kst 3.702412e-01   p_cons 1.017647e-03   p_joint 3.688235e-03

Joint ci ratio: 1.478733e-01	ci left: 3.601248e-03	ci right 4.181576e-03	k: 699	n:180000
Cons ci ratio: 2.904220e-01	ci left: 8.644527e-04	ci right 1.163105e-03	k: 181	n:180000
KS ci ratio: 1.206637e-02	ci left: 3.673805e-01	ci right 3.718459e-01	k: 66530	n:180000
KRT74   180000 perm   52 sec   (3480 perm/sec)   p_kst 3.696111e-01   p_cons 1.005556e-03   p_joint 3.883333e-03

Joint ci ratio: 1.476769e-01	ci left: 3.421822e-03	ci right 3.972438e-03	k: 701	n:190000
Cons ci ratio: 2.842437e-01	ci left: 8.580261e-04	ci right 1.147021e-03	k: 189	n:190000
KS ci ratio: 1.174363e-02	ci left: 3.674763e-01	ci right 3.718225e-01	k: 70233	n:190000
KRT74   190000 perm   55 sec   (3428 perm/sec)   p_kst 3.696474e-01   p_cons 9.947368e-04   p_joint 3.689474e-03

Joint ci ratio: 1.471656e-01	ci left: 3.274791e-03	ci right 3.799761e-03	k: 706	n:200000
Cons ci ratio: 2.723171e-01	ci left: 8.941986e-04	ci right 1.180580e-03	k: 206	n:200000
KS ci ratio: 1.144782e-02	ci left: 3.674689e-01	ci right 3.717048e-01	k: 73917	n:200000
KRT74   200000 perm   59 sec   (3378 perm/sec)   p_kst 3.695850e-01   p_cons 1.030000e-03   p_joint 3.530000e-03

Joint ci ratio: 1.431696e-01	ci left: 3.302410e-03	ci right 3.816205e-03	k: 746	n:210000
Cons ci ratio: 2.641472e-01	ci left: 9.093616e-04	ci right 1.190418e-03	k: 219	n:210000
KS ci ratio: 1.117180e-02	ci left: 3.675254e-01	ci right 3.716591e-01	k: 77614	n:210000
KRT74   210000 perm   63 sec   (3328 perm/sec)   p_kst 3.695905e-01   p_cons 1.042857e-03   p_joint 3.552381e-03

Joint ci ratio: 1.298207e-01	ci left: 3.859254e-03	ci right 4.399394e-03	k: 907	n:220000
Cons ci ratio: 2.572243e-01	ci left: 9.190095e-04	ci right 1.194409e-03	k: 231	n:220000
KS ci ratio: 1.090355e-02	ci left: 3.680592e-01	ci right 3.720988e-01	k: 81417	n:220000
KRT74   220000 perm   67 sec   (3280 perm/sec)   p_kst 3.700773e-01   p_cons 1.050000e-03   p_joint 4.122727e-03

Joint ci ratio: 1.291205e-01	ci left: 3.733515e-03	ci right 4.253021e-03	k: 917	n:230000
Cons ci ratio: 2.508186e-01	ci left: 9.279059e-04	ci right 1.197965e-03	k: 243	n:230000
KS ci ratio: 1.066974e-02	ci left: 3.678483e-01	ci right 3.717985e-01	k: 85059	n:230000
KRT74   230000 perm   71 sec   (3234 perm/sec)   p_kst 3.698217e-01   p_cons 1.056522e-03   p_joint 3.986957e-03

Joint ci ratio: 1.018580e-01	ci left: 5.820805e-03	ci right 6.449545e-03	k: 1471	n:240000
Cons ci ratio: 2.523821e-01	ci left: 8.775283e-04	ci right 1.134768e-03	k: 240	n:240000
KS ci ratio: 1.044287e-02	ci left: 3.679888e-01	ci right 3.718560e-01	k: 88781	n:240000
KRT74   240000 perm   75 sec   (3190 perm/sec)   p_kst 3.699208e-01   p_cons 1.000000e-03   p_joint 6.129167e-03

Joint ci ratio: 9.971290e-02	ci left: 5.837523e-03	ci right 6.454011e-03	k: 1535	n:250000
Cons ci ratio: 2.482957e-01	ci left: 8.724194e-04	ci right 1.123381e-03	k: 248	n:250000
KS ci ratio: 1.022541e-02	ci left: 3.683227e-01	ci right 3.721123e-01	k: 92554	n:250000
KRT74   250000 perm   80 sec   (3145 perm/sec)   p_kst 3.702160e-01   p_cons 9.920000e-04   p_joint 6.140000e-03

Joint ci ratio: 9.882270e-02	ci left: 5.718004e-03	ci right 6.316165e-03	k: 1563	n:260000
Cons ci ratio: 2.444015e-01	ci left: 8.677345e-04	ci right 1.112839e-03	k: 256	n:260000
KS ci ratio: 1.002355e-02	ci left: 3.685126e-01	ci right 3.722288e-01	k: 96296	n:260000
KRT74   260000 perm   84 sec   (3101 perm/sec)   p_kst 3.703692e-01   p_cons 9.846154e-04   p_joint 6.011538e-03

Joint ci ratio: 9.915311e-02	ci left: 5.470071e-03	ci right 6.044320e-03	k: 1553	n:270000
Cons ci ratio: 2.393328e-01	ci left: 8.738684e-04	ci right 1.114828e-03	k: 267	n:270000
KS ci ratio: 9.837873e-03	ci left: 3.684670e-01	ci right 3.721135e-01	k: 99978	n:270000
KRT74   270000 perm   88 sec   (3058 perm/sec)   p_kst 3.702889e-01   p_cons 9.888889e-04   p_joint 5.751852e-03

Joint ci ratio: 1.078450e-01	ci left: 4.443066e-03	ci right 4.952983e-03	k: 1314	n:280000
Cons ci ratio: 2.354130e-01	ci left: 8.728902e-04	ci right 1.109063e-03	k: 276	n:280000
KS ci ratio: 9.681491e-03	ci left: 3.674941e-01	ci right 3.710729e-01	k: 103399	n:280000
KRT74   280000 perm   93 sec   (3019 perm/sec)   p_kst 3.692821e-01   p_cons 9.857143e-04   p_joint 4.692857e-03

Joint ci ratio: 1.061246e-01	ci left: 4.434164e-03	ci right 4.934434e-03	k: 1357	n:290000
Cons ci ratio: 2.308731e-01	ci left: 8.785065e-04	ci right 1.110962e-03	k: 287	n:290000
KS ci ratio: 9.507956e-03	ci left: 3.677773e-01	ci right 3.712942e-01	k: 107165	n:290000
KRT74   290000 perm   97 sec   (2980 perm/sec)   p_kst 3.695345e-01   p_cons 9.896552e-04   p_joint 4.679310e-03

Joint ci ratio: 1.092903e-01	ci left: 4.036559e-03	ci right 4.506430e-03	k: 1280	n:300000
Cons ci ratio: 2.277326e-01	ci left: 8.743577e-04	ci right 1.102126e-03	k: 295	n:300000
KS ci ratio: 9.347838e-03	ci left: 3.678224e-01	ci right 3.712801e-01	k: 110865	n:300000
KRT74   300000 perm   102 sec   (2940 perm/sec)   p_kst 3.695500e-01   p_cons 9.833333e-04   p_joint 4.266667e-03

Joint ci ratio: 1.076643e-01	ci left: 4.028740e-03	ci right 4.490281e-03	k: 1319	n:310000
Cons ci ratio: 2.232514e-01	ci left: 8.826764e-04	ci right 1.107465e-03	k: 307	n:310000
KS ci ratio: 9.195291e-03	ci left: 3.678779e-01	ci right 3.712794e-01	k: 114569	n:310000
KRT74   310000 perm   107 sec   (2904 perm/sec)   p_kst 3.695774e-01   p_cons 9.903226e-04   p_joint 4.254839e-03

Joint ci ratio: 1.056028e-01	ci left: 4.061011e-03	ci right 4.516788e-03	k: 1371	n:320000
Cons ci ratio: 2.197131e-01	ci left: 8.846094e-04	ci right 1.105838e-03	k: 317	n:320000
KS ci ratio: 9.051313e-03	ci left: 3.678616e-01	ci right 3.712095e-01	k: 118251	n:320000
KRT74   320000 perm   112 sec   (2867 perm/sec)   p_kst 3.695344e-01   p_cons 9.906250e-04   p_joint 4.284375e-03

Joint ci ratio: 1.042079e-01	ci left: 4.047128e-03	ci right 4.494979e-03	k: 1408	n:330000
Cons ci ratio: 2.180075e-01	ci left: 8.721234e-04	ci right 1.088309e-03	k: 322	n:330000
KS ci ratio: 8.917313e-03	ci left: 3.676682e-01	ci right 3.709644e-01	k: 121874	n:330000
KRT74   330000 perm   117 sec   (2830 perm/sec)   p_kst 3.693152e-01   p_cons 9.757576e-04   p_joint 4.266667e-03

Joint ci ratio: 9.309077e-02	ci left: 4.946632e-03	ci right 5.432448e-03	k: 1763	n:340000
Cons ci ratio: 2.131136e-01	ci left: 8.882096e-04	ci right 1.102795e-03	k: 337	n:340000
KS ci ratio: 8.782158e-03	ci left: 3.678537e-01	ci right 3.711014e-01	k: 125622	n:340000
KRT74   340000 perm   122 sec   (2797 perm/sec)   p_kst 3.694765e-01   p_cons 9.911765e-04   p_joint 5.185294e-03

Joint ci ratio: 9.598405e-02	ci left: 4.515133e-03	ci right 4.973126e-03	k: 1659	n:350000
Cons ci ratio: 2.100293e-01	ci left: 8.898899e-04	ci right 1.101369e-03	k: 347	n:350000
KS ci ratio: 8.660823e-03	ci left: 3.676066e-01	ci right 3.708070e-01	k: 129222	n:350000
KRT74   350000 perm   127 sec   (2764 perm/sec)   p_kst 3.692057e-01   p_cons 9.914286e-04   p_joint 4.740000e-03

Joint ci ratio: 9.479308e-02	ci left: 4.503594e-03	ci right 4.954435e-03	k: 1701	n:360000
Cons ci ratio: 2.076565e-01	ci left: 8.862306e-04	ci right 1.094159e-03	k: 355	n:360000
KS ci ratio: 8.540658e-03	ci left: 3.675761e-01	ci right 3.707316e-01	k: 132895	n:360000
KRT74   360000 perm   132 sec   (2731 perm/sec)   p_kst 3.691528e-01   p_cons 9.861111e-04   p_joint 4.725000e-03

Joint ci ratio: 9.394350e-02	ci left: 4.463678e-03	ci right 4.906297e-03	k: 1732	n:370000
Cons ci ratio: 2.065013e-01	ci left: 8.725280e-04	ci right 1.075958e-03	k: 359	n:370000
KS ci ratio: 8.427512e-03	ci left: 3.674287e-01	ci right 3.705409e-01	k: 136524	n:370000
KRT74   370000 perm   137 sec   (2698 perm/sec)   p_kst 3.689838e-01   p_cons 9.702703e-04   p_joint 4.681081e-03

Joint ci ratio: 7.782881e-02	ci left: 6.373391e-03	ci right 6.892070e-03	k: 2519	n:380000
Cons ci ratio: 2.036916e-01	ci left: 8.745312e-04	ci right 1.075309e-03	k: 369	n:380000
KS ci ratio: 8.384497e-03	ci left: 3.636347e-01	ci right 3.666990e-01	k: 138763	n:380000
KRT74   380000 perm   142 sec   (2669 perm/sec)   p_kst 3.651658e-01   p_cons 9.710526e-04   p_joint 6.628947e-03

Joint ci ratio: 7.797575e-02	ci left: 6.187320e-03	ci right 6.691850e-03	k: 2510	n:390000
Cons ci ratio: 2.020608e-01	ci left: 8.667100e-04	ci right 1.063902e-03	k: 375	n:390000
KS ci ratio: 8.280870e-03	ci left: 3.633991e-01	ci right 3.664234e-01	k: 142315	n:390000
KRT74   390000 perm   148 sec   (2639 perm/sec)   p_kst 3.649103e-01   p_cons 9.615385e-04   p_joint 6.435897e-03

Joint ci ratio: 7.734912e-02	ci left: 6.133140e-03	ci right 6.629052e-03	k: 2551	n:400000
Cons ci ratio: 1.991681e-01	ci left: 8.711612e-04	ci right 1.066184e-03	k: 386	n:400000
KS ci ratio: 8.174461e-03	ci left: 3.635453e-01	ci right 3.665317e-01	k: 146015	n:400000
KRT74   400000 perm   153 sec   (2607 perm/sec)   p_kst 3.650375e-01   p_cons 9.650000e-04   p_joint 6.377500e-03

Joint ci ratio: 7.658883e-02	ci left: 6.105544e-03	ci right 6.594155e-03	k: 2602	n:410000
Cons ci ratio: 1.971413e-01	ci left: 8.684573e-04	ci right 1.060659e-03	k: 394	n:410000
KS ci ratio: 8.071116e-03	ci left: 3.637381e-01	ci right 3.666882e-01	k: 149737	n:410000
KRT74   410000 perm   159 sec   (2576 perm/sec)   p_kst 3.652122e-01   p_cons 9.609756e-04   p_joint 6.346341e-03

Joint ci ratio: 7.963758e-02	ci left: 5.507220e-03	ci right 5.966306e-03	k: 2408	n:420000
Cons ci ratio: 1.954180e-01	ci left: 8.636272e-04	ci right 1.052890e-03	k: 401	n:420000
KS ci ratio: 7.973967e-03	ci left: 3.637840e-01	ci right 3.666988e-01	k: 153401	n:420000
KRT74   420000 perm   165 sec   (2549 perm/sec)   p_kst 3.652405e-01   p_cons 9.547619e-04   p_joint 5.733333e-03

Joint ci ratio: 7.866374e-02	ci left: 5.515919e-03	ci right 5.969850e-03	k: 2468	n:430000
Cons ci ratio: 1.944542e-01	ci left: 8.523907e-04	ci right 1.038161e-03	k: 405	n:430000
KS ci ratio: 7.879256e-03	ci left: 3.638861e-01	ci right 3.667669e-01	k: 157090	n:430000
KRT74   430000 perm   171 sec   (2522 perm/sec)   p_kst 3.653256e-01   p_cons 9.418605e-04   p_joint 5.739535e-03

Joint ci ratio: 7.767845e-02	ci left: 5.530942e-03	ci right 5.980150e-03	k: 2531	n:440000
Cons ci ratio: 1.907309e-01	ci left: 8.676293e-04	ci right 1.052680e-03	k: 421	n:440000
KS ci ratio: 7.786314e-03	ci left: 3.640746e-01	ci right 3.669227e-01	k: 160819	n:440000
KRT74   440000 perm   176 sec   (2497 perm/sec)   p_kst 3.654977e-01   p_cons 9.568182e-04   p_joint 5.752273e-03

Joint ci ratio: 7.677392e-02	ci left: 5.538791e-03	ci right 5.983165e-03	k: 2591	n:450000
Cons ci ratio: 1.887291e-01	ci left: 8.673986e-04	ci right 1.050236e-03	k: 430	n:450000
KS ci ratio: 7.696806e-03	ci left: 3.642415e-01	ci right 3.670580e-01	k: 164542	n:450000
KRT74   450000 perm   182 sec   (2470 perm/sec)   p_kst 3.656489e-01   p_cons 9.555556e-04   p_joint 5.757778e-03

Joint ci ratio: 7.601567e-02	ci left: 5.529265e-03	ci right 5.968300e-03	k: 2643	n:460000
Cons ci ratio: 1.867891e-01	ci left: 8.671877e-04	ci right 1.047889e-03	k: 439	n:460000
KS ci ratio: 7.612989e-03	ci left: 3.642384e-01	ci right 3.670241e-01	k: 168190	n:460000
KRT74   460000 perm   188 sec   (2444 perm/sec)   p_kst 3.656304e-01   p_cons 9.543478e-04   p_joint 5.745652e-03

Joint ci ratio: 7.645779e-02	ci left: 5.348990e-03	ci right 5.776289e-03	k: 2613	n:470000
Cons ci ratio: 1.844968e-01	ci left: 8.710537e-04	ci right 1.050084e-03	k: 450	n:470000
KS ci ratio: 7.533752e-03	ci left: 3.641188e-01	ci right 3.668744e-01	k: 171783	n:470000
KRT74   470000 perm   194 sec   (2419 perm/sec)   p_kst 3.654957e-01   p_cons 9.574468e-04   p_joint 5.559574e-03

Joint ci ratio: 7.130913e-02	ci left: 6.033086e-03	ci right 6.481238e-03	k: 3002	n:480000
Cons ci ratio: 1.836851e-01	ci left: 8.608557e-04	ci right 1.036924e-03	k: 454	n:480000
KS ci ratio: 7.457340e-03	ci left: 3.639792e-01	ci right 3.667057e-01	k: 175364	n:480000
KRT74   480000 perm   200 sec   (2394 perm/sec)   p_kst 3.653417e-01   p_cons 9.458333e-04   p_joint 6.254167e-03

Joint ci ratio: 7.277901e-02	ci left: 5.671441e-03	ci right 6.101780e-03	k: 2883	n:490000
Cons ci ratio: 1.816992e-01	ci left: 8.627621e-04	ci right 1.037103e-03	k: 464	n:490000
KS ci ratio: 7.152724e-03	ci left: 3.786610e-01	ci right 3.813812e-01	k: 186210	n:490000
KRT74   490000 perm   207 sec   (2370 perm/sec)   p_kst 3.800204e-01   p_cons 9.469388e-04   p_joint 5.883673e-03

Joint ci ratio: 7.679616e-02	ci left: 4.984858e-03	ci right 5.384909e-03	k: 2591	n:500000
Cons ci ratio: 1.799660e-01	ci left: 8.626921e-04	ci right 1.035175e-03	k: 473	n:500000
KS ci ratio: 7.080662e-03	ci left: 3.786863e-01	ci right 3.813791e-01	k: 190016	n:500000
KRT74   500000 perm   213 sec   (2345 perm/sec)   p_kst 3.800320e-01   p_cons 9.460000e-04   p_joint 5.182000e-03

Joint ci ratio: 7.600833e-02	ci left: 4.990975e-03	ci right 5.387227e-03	k: 2645	n:510000
Cons ci ratio: 1.777299e-01	ci left: 8.682529e-04	ci right 1.039459e-03	k: 485	n:510000
KS ci ratio: 7.010677e-03	ci left: 3.787146e-01	ci right 3.813809e-01	k: 193824	n:510000
KRT74   510000 perm   220 sec   (2323 perm/sec)   p_kst 3.800471e-01   p_cons 9.509804e-04   p_joint 5.186275e-03

Joint ci ratio: 7.813277e-02	ci left: 4.629032e-03	ci right 5.007287e-03	k: 2504	n:520000
Cons ci ratio: 1.757518e-01	ci left: 8.717739e-04	ci right 1.041558e-03	k: 496	n:520000
KS ci ratio: 6.943690e-03	ci left: 3.786766e-01	ci right 3.813170e-01	k: 197598	n:520000
KRT74   520000 perm   226 sec   (2300 perm/sec)   p_kst 3.799962e-01   p_cons 9.538462e-04   p_joint 4.815385e-03

Joint ci ratio: 7.784028e-02	ci left: 4.576837e-03	ci right 4.949363e-03	k: 2523	n:530000
Cons ci ratio: 1.733268e-01	ci left: 8.805869e-04	ci right 1.049473e-03	k: 510	n:530000
KS ci ratio: 6.877568e-03	ci left: 3.787099e-01	ci right 3.813254e-01	k: 201409	n:530000
KRT74   530000 perm   233 sec   (2278 perm/sec)   p_kst 3.800170e-01   p_cons 9.622642e-04   p_joint 4.760377e-03

Joint ci ratio: 7.861411e-02	ci left: 4.403100e-03	ci right 4.765210e-03	k: 2474	n:540000
Cons ci ratio: 1.716553e-01	ci left: 8.819988e-04	ci right 1.049356e-03	k: 520	n:540000
KS ci ratio: 6.812684e-03	ci left: 3.787847e-01	ci right 3.813759e-01	k: 205243	n:540000
KRT74   540000 perm   239 sec   (2256 perm/sec)   p_kst 3.800796e-01   p_cons 9.629630e-04   p_joint 4.581481e-03

Joint ci ratio: 7.841081e-02	ci left: 4.346211e-03	ci right 4.702676e-03	k: 2487	n:550000
Cons ci ratio: 1.706759e-01	ci left: 8.764040e-04	ci right 1.041653e-03	k: 526	n:550000
KS ci ratio: 6.751868e-03	ci left: 3.786988e-01	ci right 3.812661e-01	k: 208990	n:550000
KRT74   550000 perm   246 sec   (2234 perm/sec)   p_kst 3.799818e-01   p_cons 9.563636e-04   p_joint 4.521818e-03

Joint ci ratio: 7.788126e-02	ci left: 4.328126e-03	ci right 4.680602e-03	k: 2521	n:560000
Cons ci ratio: 1.697131e-01	ci left: 8.710116e-04	ci right 1.034222e-03	k: 532	n:560000
KS ci ratio: 6.690598e-03	ci left: 3.787606e-01	ci right 3.813050e-01	k: 212818	n:560000
KRT74   560000 perm   253 sec   (2214 perm/sec)   p_kst 3.800321e-01   p_cons 9.500000e-04   p_joint 4.501786e-03

Joint ci ratio: 7.733191e-02	ci left: 4.314125e-03	ci right 4.662871e-03	k: 2557	n:570000
Cons ci ratio: 1.678339e-01	ci left: 8.758943e-04	ci right 1.038019e-03	k: 544	n:570000
KS ci ratio: 6.632669e-03	ci left: 3.786993e-01	ci right 3.812212e-01	k: 216577	n:570000
KRT74   570000 perm   260 sec   (2193 perm/sec)   p_kst 3.799596e-01   p_cons 9.543860e-04   p_joint 4.485965e-03

Joint ci ratio: 7.663097e-02	ci left: 4.319218e-03	ci right 4.665070e-03	k: 2604	n:580000
Cons ci ratio: 1.661652e-01	ci left: 8.789656e-04	ci right 1.039879e-03	k: 555	n:580000
KS ci ratio: 6.577808e-03	ci left: 3.785266e-01	ci right 3.810263e-01	k: 220270	n:580000
KRT74   580000 perm   267 sec   (2173 perm/sec)   p_kst 3.797759e-01   p_cons 9.568966e-04   p_joint 4.489655e-03

Joint ci ratio: 7.738341e-02	ci left: 4.162885e-03	ci right 4.499638e-03	k: 2554	n:590000
Cons ci ratio: 1.652763e-01	ci left: 8.738155e-04	ci right 1.032845e-03	k: 561	n:590000
KS ci ratio: 6.523088e-03	ci left: 3.784462e-01	ci right 3.809245e-01	k: 224014	n:590000
KRT74   590000 perm   274 sec   (2154 perm/sec)   p_kst 3.796847e-01   p_cons 9.508475e-04   p_joint 4.328814e-03

Joint ci ratio: 7.666630e-02	ci left: 4.171963e-03	ci right 4.506184e-03	k: 2602	n:600000
Cons ci ratio: 1.639687e-01	ci left: 8.736339e-04	ci right 1.031249e-03	k: 570	n:600000
KS ci ratio: 6.468017e-03	ci left: 3.784918e-01	ci right 3.809494e-01	k: 227832	n:600000
KRT74   600000 perm   281 sec   (2134 perm/sec)   p_kst 3.797200e-01   p_cons 9.500000e-04   p_joint 4.336667e-03

Joint ci ratio: 7.605526e-02	ci left: 4.171108e-03	ci right 4.502479e-03	k: 2644	n:610000
Cons ci ratio: 1.629731e-01	ci left: 8.703178e-04	ci right 1.026288e-03	k: 577	n:610000
KS ci ratio: 6.414764e-03	ci left: 3.785032e-01	ci right 3.809406e-01	k: 231630	n:610000
KRT74   610000 perm   288 sec   (2115 perm/sec)   p_kst 3.797213e-01   p_cons 9.459016e-04   p_joint 4.334426e-03

Joint ci ratio: 7.544450e-02	ci left: 4.171873e-03	ci right 4.500527e-03	k: 2687	n:620000
Cons ci ratio: 1.618570e-01	ci left: 8.686592e-04	ci right 1.023162e-03	k: 585	n:620000
KS ci ratio: 6.362260e-03	ci left: 3.785546e-01	ci right 3.809723e-01	k: 235453	n:620000
KRT74   620000 perm   296 sec   (2096 perm/sec)   p_kst 3.797629e-01   p_cons 9.435484e-04   p_joint 4.333871e-03

Joint ci ratio: 7.821282e-02	ci left: 3.816058e-03	ci right 4.128213e-03	k: 2501	n:630000
Cons ci ratio: 1.600906e-01	ci left: 8.746748e-04	ci right 1.028386e-03	k: 598	n:630000
KS ci ratio: 6.312705e-03	ci left: 3.784792e-01	ci right 3.808775e-01	k: 239197	n:630000
KRT74   630000 perm   303 sec   (2077 perm/sec)   p_kst 3.796778e-01   p_cons 9.492063e-04   p_joint 3.969841e-03

Joint ci ratio: 7.190858e-02	ci left: 4.455631e-03	ci right 4.789502e-03	k: 2957	n:640000
Cons ci ratio: 1.508012e-01	ci left: 9.751467e-04	ci right 1.135675e-03	k: 674	n:640000
KS ci ratio: 6.264664e-03	ci left: 3.783780e-01	ci right 3.807574e-01	k: 242923	n:640000
KRT74   640000 perm   311 sec   (2059 perm/sec)   p_kst 3.795672e-01   p_cons 1.053125e-03   p_joint 4.620313e-03

Joint ci ratio: 7.139172e-02	ci left: 4.452052e-03	ci right 4.783157e-03	k: 3000	n:650000
Cons ci ratio: 1.498059e-01	ci left: 9.734698e-04	ci right 1.132569e-03	k: 683	n:650000
KS ci ratio: 6.216525e-03	ci left: 3.783693e-01	ci right 3.807303e-01	k: 246707	n:650000
KRT74   650000 perm   318 sec   (2042 perm/sec)   p_kst 3.795492e-01   p_cons 1.050769e-03   p_joint 4.615385e-03

Joint ci ratio: 7.096788e-02	ci left: 4.438170e-03	ci right 4.766202e-03	k: 3036	n:660000
Cons ci ratio: 1.489378e-01	ci left: 9.703884e-04	ci right 1.127983e-03	k: 691	n:660000
KS ci ratio: 6.169022e-03	ci left: 3.783957e-01	ci right 3.807387e-01	k: 250514	n:660000
KRT74   660000 perm   326 sec   (2026 perm/sec)   p_kst 3.795667e-01   p_cons 1.046970e-03   p_joint 4.600000e-03

Joint ci ratio: 7.100557e-02	ci left: 4.367525e-03	ci right 4.690514e-03	k: 3033	n:670000
Cons ci ratio: 1.475579e-01	ci left: 9.745884e-04	ci right 1.131270e-03	k: 704	n:670000
KS ci ratio: 6.121544e-03	ci left: 3.785019e-01	ci right 3.808275e-01	k: 254375	n:670000
KRT74   670000 perm   334 sec   (2009 perm/sec)   p_kst 3.796642e-01   p_cons 1.050746e-03   p_joint 4.526866e-03

Joint ci ratio: 7.034722e-02	ci left: 4.385640e-03	ci right 4.706839e-03	k: 3090	n:680000
Cons ci ratio: 1.467281e-01	ci left: 9.715876e-04	ci right 1.126831e-03	k: 712	n:680000
KS ci ratio: 6.075980e-03	ci left: 3.785404e-01	ci right 3.808489e-01	k: 258192	n:680000
KRT74   680000 perm   341 sec   (1992 perm/sec)   p_kst 3.796941e-01   p_cons 1.047059e-03   p_joint 4.544118e-03

Joint ci ratio: 6.980716e-02	ci left: 4.390426e-03	ci right 4.709407e-03	k: 3138	n:690000
Cons ci ratio: 1.461150e-01	ci left: 9.658835e-04	ci right 1.119514e-03	k: 718	n:690000
KS ci ratio: 6.032105e-03	ci left: 3.785243e-01	ci right 3.808159e-01	k: 261972	n:690000
KRT74   690000 perm   349 sec   (1976 perm/sec)   p_kst 3.796696e-01   p_cons 1.040580e-03   p_joint 4.547826e-03

Joint ci ratio: 6.946572e-02	ci left: 4.371219e-03	ci right 4.687189e-03	k: 3169	n:700000
Cons ci ratio: 1.447126e-01	ci left: 9.713577e-04	ci right 1.124248e-03	k: 732	n:700000
KS ci ratio: 5.989040e-03	ci left: 3.785186e-01	ci right 3.807938e-01	k: 265759	n:700000
KRT74   700000 perm   357 sec   (1959 perm/sec)   p_kst 3.796557e-01   p_cons 1.045714e-03   p_joint 4.527143e-03

Joint ci ratio: 6.408498e-02	ci left: 5.074213e-03	ci right 5.411534e-03	k: 3721	n:710000
Cons ci ratio: 1.431580e-01	ci left: 9.794006e-04	ci right 1.131760e-03	k: 748	n:710000
KS ci ratio: 5.946849e-03	ci left: 3.785160e-01	ci right 3.807751e-01	k: 269548	n:710000
KRT74   710000 perm   365 sec   (1943 perm/sec)   p_kst 3.796451e-01   p_cons 1.053521e-03   p_joint 5.240845e-03

Joint ci ratio: 6.492551e-02	ci left: 4.873905e-03	ci right 5.202319e-03	k: 3626	n:720000
Cons ci ratio: 1.422119e-01	ci left: 9.791909e-04	ci right 1.130425e-03	k: 758	n:720000
KS ci ratio: 5.904806e-03	ci left: 3.785719e-01	ci right 3.808152e-01	k: 273379	n:720000
KRT74   720000 perm   374 sec   (1927 perm/sec)   p_kst 3.796931e-01   p_cons 1.052778e-03   p_joint 5.036111e-03

Joint ci ratio: 6.532718e-02	ci left: 4.747837e-03	ci right 5.069810e-03	k: 3582	n:730000
Cons ci ratio: 1.412842e-01	ci left: 9.789901e-04	ci right 1.129124e-03	k: 768	n:730000
KS ci ratio: 5.864869e-03	ci left: 3.785276e-01	ci right 3.807555e-01	k: 277138	n:730000
KRT74   730000 perm   382 sec   (1912 perm/sec)   p_kst 3.796411e-01   p_cons 1.052055e-03   p_joint 4.906849e-03

Joint ci ratio: 6.529275e-02	ci left: 4.688989e-03	ci right 5.006798e-03	k: 3586	n:740000
Cons ci ratio: 1.403745e-01	ci left: 9.787979e-04	ci right 1.127855e-03	k: 778	n:740000
KS ci ratio: 5.825599e-03	ci left: 3.784955e-01	ci right 3.807082e-01	k: 280905	n:740000
KRT74   740000 perm   390 sec   (1896 perm/sec)   p_kst 3.796014e-01   p_cons 1.051351e-03   p_joint 4.845946e-03

Joint ci ratio: 6.576631e-02	ci left: 4.559574e-03	ci right 4.870938e-03	k: 3535	n:750000
Cons ci ratio: 1.393938e-01	ci left: 9.799007e-04	ci right 1.127996e-03	k: 789	n:750000
KS ci ratio: 5.785764e-03	ci left: 3.785735e-01	ci right 3.807715e-01	k: 284754	n:750000
KRT74   750000 perm   399 sec   (1882 perm/sec)   p_kst 3.796720e-01   p_cons 1.052000e-03   p_joint 4.713333e-03

Joint ci ratio: 6.516928e-02	ci left: 4.583707e-03	ci right 4.893770e-03	k: 3600	n:760000
Cons ci ratio: 1.382606e-01	ci left: 9.835185e-04	ci right 1.130853e-03	k: 802	n:760000
KS ci ratio: 5.747521e-03	ci left: 3.785850e-01	ci right 3.807685e-01	k: 288554	n:760000
KRT74   760000 perm   407 sec   (1866 perm/sec)   p_kst 3.796763e-01   p_cons 1.055263e-03   p_joint 4.736842e-03

Joint ci ratio: 6.518948e-02	ci left: 4.521619e-03	ci right 4.827580e-03	k: 3598	n:770000
Cons ci ratio: 1.372388e-01	ci left: 9.857930e-04	ci right 1.132288e-03	k: 814	n:770000
KS ci ratio: 5.709098e-03	ci left: 3.786729e-01	ci right 3.808423e-01	k: 292413	n:770000
KRT74   770000 perm   416 sec   (1851 perm/sec)   p_kst 3.797571e-01   p_cons 1.057143e-03   p_joint 4.672727e-03

Joint ci ratio: 6.467888e-02	ci left: 4.535541e-03	ci right 4.839951e-03	k: 3655	n:780000
Cons ci ratio: 1.360748e-01	ci left: 9.904898e-04	ci right 1.136333e-03	k: 828	n:780000
KS ci ratio: 5.670540e-03	ci left: 3.788329e-01	ci right 3.809885e-01	k: 296330	n:780000
KRT74   780000 perm   425 sec   (1837 perm/sec)   p_kst 3.799103e-01   p_cons 1.061538e-03   p_joint 4.685897e-03

Joint ci ratio: 6.428454e-02	ci left: 4.534172e-03	ci right 4.836566e-03	k: 3700	n:790000
Cons ci ratio: 1.354231e-01	ci left: 9.877346e-04	ci right 1.132420e-03	k: 836	n:790000
KS ci ratio: 5.634371e-03	ci left: 3.788536e-01	ci right 3.809954e-01	k: 300140	n:790000
KRT74   790000 perm   434 sec   (1822 perm/sec)   p_kst 3.799241e-01   p_cons 1.058228e-03   p_joint 4.683544e-03

Joint ci ratio: 6.535961e-02	ci left: 4.329912e-03	ci right 4.623694e-03	k: 3580	n:800000
Cons ci ratio: 1.343834e-01	ci left: 9.910896e-04	ci right 1.135062e-03	k: 849	n:800000
KS ci ratio: 5.599614e-03	ci left: 3.788125e-01	ci right 3.809409e-01	k: 303901	n:800000
KRT74   800000 perm   443 sec   (1808 perm/sec)   p_kst 3.798763e-01   p_cons 1.061250e-03   p_joint 4.475000e-03

Joint ci ratio: 6.488988e-02	ci left: 4.339609e-03	ci right 4.631854e-03	k: 3632	n:810000
Cons ci ratio: 1.336777e-01	ci left: 9.895924e-04	ci right 1.132533e-03	k: 858	n:810000
KS ci ratio: 5.564734e-03	ci left: 3.788367e-01	ci right 3.809519e-01	k: 307714	n:810000
KRT74   810000 perm   452 sec   (1793 perm/sec)   p_kst 3.798938e-01   p_cons 1.059259e-03   p_joint 4.483951e-03

Joint ci ratio: 6.588261e-02	ci left: 4.157120e-03	ci right 4.441521e-03	k: 3524	n:820000
Cons ci ratio: 1.328298e-01	ci left: 9.904917e-04	ci right 1.132583e-03	k: 869	n:820000
KS ci ratio: 5.529653e-03	ci left: 3.789322e-01	ci right 3.810345e-01	k: 311586	n:820000
KRT74   820000 perm   461 sec   (1779 perm/sec)   p_kst 3.799829e-01   p_cons 1.059756e-03   p_joint 4.297561e-03

Joint ci ratio: 6.551207e-02	ci left: 4.154435e-03	ci right 4.436994e-03	k: 3564	n:830000
Cons ci ratio: 1.320730e-01	ci left: 9.902070e-04	ci right 1.131385e-03	k: 879	n:830000
KS ci ratio: 5.496604e-03	ci left: 3.789074e-01	ci right 3.809970e-01	k: 315360	n:830000
KRT74   830000 perm   470 sec   (1766 perm/sec)   p_kst 3.799518e-01   p_cons 1.059036e-03   p_joint 4.293976e-03

Joint ci ratio: 6.512052e-02	ci left: 4.155332e-03	ci right 4.436199e-03	k: 3607	n:840000
Cons ci ratio: 1.308881e-01	ci left: 9.968401e-04	ci right 1.137589e-03	k: 895	n:840000
KS ci ratio: 5.464306e-03	ci left: 3.788690e-01	ci right 3.809461e-01	k: 319122	n:840000
KRT74   840000 perm   479 sec   (1752 perm/sec)   p_kst 3.799071e-01   p_cons 1.065476e-03   p_joint 4.294048e-03

Joint ci ratio: 6.473590e-02	ci left: 4.156212e-03	ci right 4.435418e-03	k: 3650	n:850000
Cons ci ratio: 1.303800e-01	ci left: 9.930786e-04	ci right 1.132710e-03	k: 902	n:850000
KS ci ratio: 5.433046e-03	ci left: 3.787904e-01	ci right 3.808551e-01	k: 322849	n:850000
KRT74   850000 perm   489 sec   (1739 perm/sec)   p_kst 3.798224e-01   p_cons 1.061176e-03   p_joint 4.294118e-03

Joint ci ratio: 6.436677e-02	ci left: 4.155933e-03	ci right 4.433468e-03	k: 3692	n:860000
Cons ci ratio: 1.298779e-01	ci left: 9.894057e-04	ci right 1.127944e-03	k: 909	n:860000
KS ci ratio: 5.400943e-03	ci left: 3.788333e-01	ci right 3.808861e-01	k: 326679	n:860000
KRT74   860000 perm   498 sec   (1726 perm/sec)   p_kst 3.798593e-01   p_cons 1.056977e-03   p_joint 4.293023e-03

Joint ci ratio: 6.428974e-02	ci left: 4.118340e-03	ci right 4.393023e-03	k: 3701	n:870000
Cons ci ratio: 1.290999e-01	ci left: 9.902673e-04	ci right 1.128032e-03	k: 920	n:870000
KS ci ratio: 5.368904e-03	ci left: 3.789190e-01	ci right 3.809600e-01	k: 330547	n:870000
KRT74   870000 perm   508 sec   (1714 perm/sec)   p_kst 3.799391e-01   p_cons 1.057471e-03   p_joint 4.254023e-03

Joint ci ratio: 5.935638e-02	ci left: 4.785397e-03	ci right 5.079240e-03	k: 4339	n:880000
Cons ci ratio: 1.283358e-01	ci left: 9.911118e-04	ci right 1.128116e-03	k: 931	n:880000
KS ci ratio: 5.338008e-03	ci left: 3.789516e-01	ci right 3.809810e-01	k: 334370	n:880000
KRT74   880000 perm   517 sec   (1701 perm/sec)   p_kst 3.799659e-01   p_cons 1.057955e-03   p_joint 4.930682e-03

Joint ci ratio: 5.762248e-02	ci left: 5.023938e-03	ci right 5.323117e-03	k: 4603	n:890000
Cons ci ratio: 1.279933e-01	ci left: 9.854134e-04	ci right 1.121238e-03	k: 936	n:890000
KS ci ratio: 5.307652e-03	ci left: 3.789824e-01	ci right 3.810004e-01	k: 338192	n:890000
KRT74   890000 perm   527 sec   (1689 perm/sec)   p_kst 3.799910e-01   p_cons 1.051685e-03   p_joint 5.171910e-03

Joint ci ratio: 5.725037e-02	ci left: 5.033826e-03	ci right 5.331594e-03	k: 4663	n:900000
Cons ci ratio: 1.268473e-01	ci left: 9.927514e-04	ci right 1.128271e-03	k: 953	n:900000
KS ci ratio: 5.277932e-03	ci left: 3.790015e-01	ci right 3.810082e-01	k: 342004	n:900000
KRT74   900000 perm   537 sec   (1677 perm/sec)   p_kst 3.800044e-01   p_cons 1.058889e-03   p_joint 5.181111e-03

Joint ci ratio: 5.746916e-02	ci left: 4.940593e-03	ci right 5.234000e-03	k: 4628	n:910000
Cons ci ratio: 1.259265e-01	ci left: 9.967404e-04	ci right 1.131743e-03	k: 967	n:910000
KS ci ratio: 5.248816e-03	ci left: 3.790102e-01	ci right 3.810059e-01	k: 345807	n:910000
KRT74   910000 perm   546 sec   (1665 perm/sec)   p_kst 3.800077e-01   p_cons 1.062637e-03   p_joint 5.085714e-03

Joint ci ratio: 5.712450e-02	ci left: 4.946889e-03	ci right 5.238849e-03	k: 4684	n:920000
Cons ci ratio: 1.252170e-01	ci left: 9.974872e-04	ci right 1.131773e-03	k: 978	n:920000
KS ci ratio: 5.220033e-03	ci left: 3.790319e-01	ci right 3.810167e-01	k: 349622	n:920000
KRT74   920000 perm   556 sec   (1654 perm/sec)   p_kst 3.800239e-01   p_cons 1.063043e-03   p_joint 5.091304e-03

Joint ci ratio: 5.723669e-02	ci left: 4.874613e-03	ci right 5.162892e-03	k: 4666	n:930000
Cons ci ratio: 1.244565e-01	ci left: 9.992619e-04	ci right 1.132909e-03	k: 990	n:930000
KS ci ratio: 5.192108e-03	ci left: 3.790176e-01	ci right 3.809917e-01	k: 353404	n:930000
KRT74   930000 perm   566 sec   (1642 perm/sec)   p_kst 3.800043e-01   p_cons 1.064516e-03   p_joint 5.017204e-03

Joint ci ratio: 5.705422e-02	ci left: 4.854213e-03	ci right 5.140340e-03	k: 4696	n:940000
Cons ci ratio: 1.238953e-01	ci left: 9.979085e-04	ci right 1.130729e-03	k: 999	n:940000
KS ci ratio: 5.164441e-03	ci left: 3.790207e-01	ci right 3.809843e-01	k: 357202	n:940000
KRT74   940000 perm   577 sec   (1630 perm/sec)   p_kst 3.800021e-01   p_cons 1.062766e-03   p_joint 4.995745e-03

Joint ci ratio: 5.666903e-02	ci left: 4.869528e-03	ci right 5.154556e-03	k: 4760	n:950000
Cons ci ratio: 1.230368e-01	ci left: 1.001686e-03	ci right 1.134018e-03	k: 1013	n:950000
KS ci ratio: 5.137108e-03	ci left: 3.790333e-01	ci right 3.809864e-01	k: 361009	n:950000
KRT74   950000 perm   587 sec   (1619 perm/sec)   p_kst 3.800095e-01   p_cons 1.066316e-03   p_joint 5.010526e-03

Joint ci ratio: 5.633849e-02	ci left: 4.876313e-03	ci right 5.160020e-03	k: 4816	n:960000
Cons ci ratio: 1.224945e-01	ci left: 1.000339e-03	ci right 1.131868e-03	k: 1022	n:960000
KS ci ratio: 5.110351e-03	ci left: 3.790320e-01	ci right 3.809750e-01	k: 364803	n:960000
KRT74   960000 perm   597 sec   (1608 perm/sec)   p_kst 3.800031e-01   p_cons 1.064583e-03   p_joint 5.016667e-03

Joint ci ratio: 5.601367e-02	ci left: 4.882963e-03	ci right 5.165366e-03	k: 4872	n:970000
Cons ci ratio: 1.219002e-01	ci left: 1.000020e-03	ci right 1.130824e-03	k: 1032	n:970000
KS ci ratio: 5.083896e-03	ci left: 3.790411e-01	ci right 3.809740e-01	k: 368607	n:970000
KRT74   970000 perm   607 sec   (1597 perm/sec)   p_kst 3.800072e-01   p_cons 1.063918e-03   p_joint 5.022680e-03

Joint ci ratio: 5.647705e-02	ci left: 4.753650e-03	ci right 5.030922e-03	k: 4793	n:980000
Cons ci ratio: 1.212563e-01	ci left: 1.000699e-03	ci right 1.130850e-03	k: 1043	n:980000
KS ci ratio: 5.057936e-03	ci left: 3.790419e-01	ci right 3.809649e-01	k: 372403	n:980000
KRT74   980000 perm   618 sec   (1586 perm/sec)   p_kst 3.800031e-01   p_cons 1.064286e-03   p_joint 4.890816e-03

Joint ci ratio: 5.623731e-02	ci left: 4.746463e-03	ci right 5.022103e-03	k: 4834	n:990000
Cons ci ratio: 1.209673e-01	ci left: 9.954883e-04	ci right 1.124631e-03	k: 1048	n:990000
KS ci ratio: 5.032748e-03	ci left: 3.790074e-01	ci right 3.809206e-01	k: 376164	n:990000
KRT74   990000 perm   628 sec   (1576 perm/sec)   p_kst 3.799636e-01   p_cons 1.058586e-03   p_joint 4.882828e-03

Joint ci ratio: 5.645025e-02	ci left: 4.663500e-03	ci right 4.935381e-03	k: 4798	n:1000000
Cons ci ratio: 1.199985e-01	ci left: 1.002021e-03	ci right 1.130897e-03	k: 1065	n:1000000
KS ci ratio: 5.007793e-03	ci left: 3.789865e-01	ci right 3.808902e-01	k: 379938	n:1000000
KRT74   1000000 perm   639 sec   (1565 perm/sec)   p_kst 3.799380e-01   p_cons 1.065000e-03   p_joint 4.798000e-03

Joint ci ratio: 5.388814e-02	ci left: 5.071403e-03	ci right 5.353228e-03	k: 5263	n:1010000
Cons ci ratio: 1.195509e-01	ci left: 9.997837e-04	ci right 1.127858e-03	k: 1073	n:1010000
KS ci ratio: 4.982955e-03	ci left: 3.789899e-01	ci right 3.808841e-01	k: 383736	n:1010000
KRT74   1010000 perm   650 sec   (1555 perm/sec)   p_kst 3.799366e-01   p_cons 1.062376e-03   p_joint 5.210891e-03

Joint ci ratio: 5.364423e-02	ci left: 5.068109e-03	ci right 5.348437e-03	k: 5311	n:1020000
Cons ci ratio: 1.189433e-01	ci left: 1.000445e-03	ci right 1.127906e-03	k: 1084	n:1020000
KS ci ratio: 4.957781e-03	ci left: 3.790598e-01	ci right 3.809448e-01	k: 387602	n:1020000
KRT74   1020000 perm   661 sec   (1544 perm/sec)   p_kst 3.800020e-01   p_cons 1.062745e-03   p_joint 5.206863e-03

Joint ci ratio: 5.097026e-02	ci left: 5.564146e-03	ci right 5.856120e-03	k: 5880	n:1030000
Cons ci ratio: 1.181293e-01	ci left: 1.004863e-03	ci right 1.131950e-03	k: 1099	n:1030000
KS ci ratio: 4.933778e-03	ci left: 3.790528e-01	ci right 3.809285e-01	k: 391390	n:1030000
KRT74   1030000 perm   671 sec   (1534 perm/sec)   p_kst 3.799903e-01   p_cons 1.066990e-03   p_joint 5.708738e-03

Joint ci ratio: 5.234543e-02	ci left: 5.223037e-03	ci right 5.504729e-03	k: 5577	n:1040000
Cons ci ratio: 1.173844e-01	ci left: 1.008266e-03	ci right 1.134924e-03	k: 1113	n:1040000
KS ci ratio: 4.910411e-03	ci left: 3.790180e-01	ci right 3.808846e-01	k: 395149	n:1040000
KRT74   1040000 perm   682 sec   (1524 perm/sec)   p_kst 3.799510e-01   p_cons 1.070192e-03   p_joint 5.362500e-03

Joint ci ratio: 5.232792e-02	ci left: 5.177050e-03	ci right 5.456166e-03	k: 5581	n:1050000
Cons ci ratio: 1.168091e-01	ci left: 1.008833e-03	ci right 1.134898e-03	k: 1124	n:1050000
KS ci ratio: 4.885821e-03	ci left: 3.791333e-01	ci right 3.809912e-01	k: 399065	n:1050000
KRT74   1050000 perm   694 sec   (1514 perm/sec)   p_kst 3.800619e-01   p_cons 1.070476e-03   p_joint 5.315238e-03

Joint ci ratio: 5.208126e-02	ci left: 5.177557e-03	ci right 5.455345e-03	k: 5634	n:1060000
Cons ci ratio: 1.162422e-01	ci left: 1.009390e-03	ci right 1.134871e-03	k: 1135	n:1060000
KS ci ratio: 4.862843e-03	ci left: 3.791258e-01	ci right 3.809748e-01	k: 402853	n:1060000
KRT74   1060000 perm   705 sec   (1504 perm/sec)   p_kst 3.800500e-01   p_cons 1.070755e-03   p_joint 5.315094e-03

Joint ci ratio: 6.319465e-02	ci left: 3.469919e-03	ci right 3.697267e-03	k: 3833	n:1070000
Cons ci ratio: 1.267252e-01	ci left: 8.368302e-04	ci right 9.509462e-04	k: 955	n:1070000
KS ci ratio: 4.840321e-03	ci left: 3.791054e-01	ci right 3.809457e-01	k: 406627	n:1070000
KRT74   1070000 perm   716 sec   (1494 perm/sec)   p_kst 3.800252e-01   p_cons 8.925234e-04   p_joint 3.582243e-03

Joint ci ratio: 6.294085e-02	ci left: 3.466041e-03	ci right 3.692190e-03	k: 3864	n:1080000
Cons ci ratio: 1.265271e-01	ci left: 8.317714e-04	ci right 9.450070e-04	k: 958	n:1080000
KS ci ratio: 4.817228e-03	ci left: 3.791714e-01	ci right 3.810033e-01	k: 410494	n:1080000
KRT74   1080000 perm   727 sec   (1485 perm/sec)   p_kst 3.800870e-01   p_cons 8.870370e-04   p_joint 3.577778e-03

Joint ci ratio: 6.258538e-02	ci left: 3.473976e-03	ci right 3.699316e-03	k: 3908	n:1090000
Cons ci ratio: 1.258075e-01	ci left: 8.339137e-04	ci right 9.467472e-04	k: 969	n:1090000
KS ci ratio: 4.794939e-03	ci left: 3.791895e-01	ci right 3.810130e-01	k: 414310	n:1090000
KRT74   1090000 perm   739 sec   (1475 perm/sec)   p_kst 3.801009e-01   p_cons 8.889908e-04   p_joint 3.585321e-03

Joint ci ratio: 6.233882e-02	ci left: 3.470136e-03	ci right 3.694308e-03	k: 3939	n:1100000
Cons ci ratio: 1.254204e-01	ci left: 8.316158e-04	ci right 9.437664e-04	k: 975	n:1100000
KS ci ratio: 4.772901e-03	ci left: 3.792127e-01	ci right 3.810279e-01	k: 418132	n:1100000
KRT74   1100000 perm   750 sec   (1466 perm/sec)   p_kst 3.801200e-01   p_cons 8.863636e-04   p_joint 3.580909e-03

Joint ci ratio: 6.202465e-02	ci left: 3.474350e-03	ci right 3.697622e-03	k: 3979	n:1110000
Cons ci ratio: 1.248461e-01	ci left: 8.319781e-04	ci right 9.436257e-04	k: 984	n:1110000
KS ci ratio: 4.751545e-03	ci left: 3.791977e-01	ci right 3.810047e-01	k: 421912	n:1110000
KRT74   1110000 perm   762 sec   (1457 perm/sec)   p_kst 3.801009e-01   p_cons 8.864865e-04   p_joint 3.584685e-03

Joint ci ratio: 6.179237e-02	ci left: 3.469700e-03	ci right 3.691808e-03	k: 4009	n:1120000
Cons ci ratio: 1.241547e-01	ci left: 8.340653e-04	ci right 9.453276e-04	k: 995	n:1120000
KS ci ratio: 4.729497e-03	ci left: 3.792803e-01	ci right 3.810792e-01	k: 425801	n:1120000
KRT74   1120000 perm   774 sec   (1448 perm/sec)   p_kst 3.801795e-01   p_cons 8.883929e-04   p_joint 3.579464e-03

Joint ci ratio: 5.992492e-02	ci left: 3.659492e-03	ci right 3.886426e-03	k: 4262	n:1130000
Cons ci ratio: 1.232909e-01	ci left: 8.386903e-04	ci right 9.497343e-04	k: 1009	n:1130000
KS ci ratio: 4.708610e-03	ci left: 3.792756e-01	ci right 3.810666e-01	k: 429593	n:1130000
KRT74   1130000 perm   785 sec   (1439 perm/sec)   p_kst 3.801708e-01   p_cons 8.929204e-04   p_joint 3.771681e-03

Joint ci ratio: 5.966657e-02	ci left: 3.659362e-03	ci right 3.885276e-03	k: 4299	n:1140000
Cons ci ratio: 1.225648e-01	ci left: 8.415360e-04	ci right 9.522531e-04	k: 1021	n:1140000
KS ci ratio: 4.688006e-03	ci left: 3.792702e-01	ci right 3.810532e-01	k: 433384	n:1140000
KRT74   1140000 perm   797 sec   (1430 perm/sec)   p_kst 3.801614e-01   p_cons 8.956140e-04   p_joint 3.771053e-03

Joint ci ratio: 5.937031e-02	ci left: 3.664377e-03	ci right 3.889438e-03	k: 4342	n:1150000
Cons ci ratio: 1.219695e-01	ci left: 8.426481e-04	ci right 9.529341e-04	k: 1031	n:1150000
KS ci ratio: 4.667559e-03	ci left: 3.792761e-01	ci right 3.810514e-01	k: 437188	n:1150000
KRT74   1150000 perm   809 sec   (1421 perm/sec)   p_kst 3.801635e-01   p_cons 8.965217e-04   p_joint 3.775652e-03

Joint ci ratio: 5.930963e-02	ci left: 3.640430e-03	ci right 3.863784e-03	k: 4351	n:1160000
Cons ci ratio: 1.215580e-01	ci left: 8.412345e-04	ci right 9.509374e-04	k: 1038	n:1160000
KS ci ratio: 4.647113e-03	ci left: 3.793087e-01	ci right 3.810764e-01	k: 441023	n:1160000
KRT74   1160000 perm   821 sec   (1413 perm/sec)   p_kst 3.801922e-01   p_cons 8.948276e-04   p_joint 3.750862e-03

Joint ci ratio: 5.971827e-02	ci left: 3.559634e-03	ci right 3.779587e-03	k: 4292	n:1170000
Cons ci ratio: 1.208619e-01	ci left: 8.439900e-04	ci right 9.533768e-04	k: 1050	n:1170000
KS ci ratio: 4.627604e-03	ci left: 3.792724e-01	ci right 3.810324e-01	k: 444778	n:1170000
KRT74   1170000 perm   833 sec   (1405 perm/sec)   p_kst 3.801521e-01   p_cons 8.974359e-04   p_joint 3.668376e-03

Joint ci ratio: 5.545898e-02	ci left: 4.099152e-03	ci right 4.333800e-03	k: 4974	n:1180000
Cons ci ratio: 1.202342e-01	ci left: 8.458785e-04	ci right 9.549003e-04	k: 1061	n:1180000
KS ci ratio: 4.608066e-03	ci left: 3.792647e-01	ci right 3.810172e-01	k: 448566	n:1180000
KRT74   1180000 perm   845 sec   (1397 perm/sec)   p_kst 3.801407e-01   p_cons 8.991525e-04   p_joint 4.215254e-03

Joint ci ratio: 5.636007e-02	ci left: 3.934608e-03	ci right 4.163615e-03	k: 4817	n:1190000
Cons ci ratio: 1.197280e-01	ci left: 8.461063e-04	ci right 9.546658e-04	k: 1070	n:1190000
KS ci ratio: 4.588978e-03	ci left: 3.792361e-01	ci right 3.809813e-01	k: 452329	n:1190000
KRT74   1190000 perm   857 sec   (1388 perm/sec)   p_kst 3.801084e-01   p_cons 8.991597e-04   p_joint 4.047899e-03

Joint ci ratio: 5.617403e-02	ci left: 3.928110e-03	ci right 4.155960e-03	k: 4849	n:1200000
Cons ci ratio: 1.192833e-01	ci left: 8.455228e-04	ci right 9.535762e-04	k: 1078	n:1200000
KS ci ratio: 4.569438e-03	ci left: 3.792789e-01	ci right 3.810167e-01	k: 456177	n:1200000
KRT74   1200000 perm   869 sec   (1380 perm/sec)   p_kst 3.801475e-01   p_cons 8.983333e-04   p_joint 4.040833e-03

Joint ci ratio: 5.611692e-02	ci left: 3.903794e-03	ci right 4.129995e-03	k: 4859	n:1210000
Cons ci ratio: 1.190081e-01	ci left: 8.425440e-04	ci right 9.499508e-04	k: 1083	n:1210000
KS ci ratio: 4.550713e-03	ci left: 3.792622e-01	ci right 3.809929e-01	k: 459954	n:1210000
KRT74   1210000 perm   882 sec   (1372 perm/sec)   p_kst 3.801273e-01   p_cons 8.950413e-04   p_joint 4.015702e-03

Joint ci ratio: 5.584165e-02	ci left: 3.910589e-03	ci right 4.136038e-03	k: 4907	n:1220000
Cons ci ratio: 1.183547e-01	ci left: 8.451821e-04	ci right 9.522922e-04	k: 1095	n:1220000
KS ci ratio: 4.532034e-03	ci left: 3.792647e-01	ci right 3.809883e-01	k: 463754	n:1220000
KRT74   1220000 perm   894 sec   (1364 perm/sec)   p_kst 3.801262e-01   p_cons 8.975410e-04   p_joint 4.022131e-03

Joint ci ratio: 5.564372e-02	ci left: 3.906854e-03	ci right 4.131263e-03	k: 4942	n:1230000
Cons ci ratio: 1.179786e-01	ci left: 8.438335e-04	ci right 9.504092e-04	k: 1102	n:1230000
KS ci ratio: 4.512960e-03	ci left: 3.793322e-01	ci right 3.810488e-01	k: 467634	n:1230000
KRT74   1230000 perm   907 sec   (1356 perm/sec)   p_kst 3.801902e-01   p_cons 8.959350e-04   p_joint 4.017886e-03

Joint ci ratio: 5.535863e-02	ci left: 3.915906e-03	ci right 4.139646e-03	k: 4993	n:1240000
Cons ci ratio: 1.172893e-01	ci left: 8.472039e-04	ci right 9.535367e-04	k: 1115	n:1240000
KS ci ratio: 4.494533e-03	ci left: 3.793559e-01	ci right 3.810656e-01	k: 471461	n:1240000
KRT74   1240000 perm   919 sec   (1349 perm/sec)   p_kst 3.802105e-01   p_cons 8.991935e-04   p_joint 4.026613e-03

Joint ci ratio: 5.514926e-02	ci left: 3.914559e-03	ci right 4.137349e-03	k: 5031	n:1250000
Cons ci ratio: 1.169232e-01	ci left: 8.458622e-04	ci right 9.516724e-04	k: 1122	n:1250000
KS ci ratio: 4.477196e-03	ci left: 3.792881e-01	ci right 3.809908e-01	k: 475174	n:1250000
KRT74   1250000 perm   932 sec   (1341 perm/sec)   p_kst 3.801392e-01   p_cons 8.976000e-04   p_joint 4.024800e-03

Joint ci ratio: 5.556745e-02	ci left: 3.824786e-03	ci right 4.044170e-03	k: 4956	n:1260000
Cons ci ratio: 1.163034e-01	ci left: 8.483950e-04	ci right 9.539209e-04	k: 1134	n:1260000
KS ci ratio: 4.459044e-03	ci left: 3.793285e-01	ci right 3.810245e-01	k: 479022	n:1260000
KRT74   1260000 perm   945 sec   (1333 perm/sec)   p_kst 3.801762e-01   p_cons 9.000000e-04   p_joint 3.933333e-03

Joint ci ratio: 5.564161e-02	ci left: 3.784574e-03	ci right 4.001950e-03	k: 4943	n:1270000
Cons ci ratio: 1.160482e-01	ci left: 8.455373e-04	ci right 9.504611e-04	k: 1139	n:1270000
KS ci ratio: 4.441341e-03	ci left: 3.793438e-01	ci right 3.810331e-01	k: 482839	n:1270000
KRT74   1270000 perm   958 sec   (1326 perm/sec)   p_kst 3.801882e-01   p_cons 8.968504e-04   p_joint 3.892126e-03

Joint ci ratio: 5.538997e-02	ci left: 3.789675e-03	ci right 4.006329e-03	k: 4988	n:1280000
Cons ci ratio: 1.153920e-01	ci left: 8.487939e-04	ci right 9.534856e-04	k: 1152	n:1280000
KS ci ratio: 4.424089e-03	ci left: 3.793332e-01	ci right 3.810158e-01	k: 486623	n:1280000
KRT74   1280000 perm   971 sec   (1318 perm/sec)   p_kst 3.801742e-01   p_cons 9.000000e-04   p_joint 3.896875e-03

Joint ci ratio: 5.611814e-02	ci left: 3.662450e-03	ci right 3.874672e-03	k: 4860	n:1290000
Cons ci ratio: 1.149442e-01	ci left: 8.489899e-04	ci right 9.532719e-04	k: 1161	n:1290000
KS ci ratio: 4.406725e-03	ci left: 3.793560e-01	ci right 3.810321e-01	k: 490450	n:1290000
KRT74   1290000 perm   984 sec   (1311 perm/sec)   p_kst 3.801938e-01   p_cons 9.000000e-04   p_joint 3.767442e-03

Joint ci ratio: 5.588862e-02	ci left: 3.664616e-03	ci right 3.876066e-03	k: 4900	n:1300000
Cons ci ratio: 1.142578e-01	ci left: 8.529198e-04	ci right 9.570167e-04	k: 1175	n:1300000
KS ci ratio: 4.390001e-03	ci left: 3.793316e-01	ci right 3.810013e-01	k: 494216	n:1300000
KRT74   1300000 perm   998 sec   (1303 perm/sec)   p_kst 3.801662e-01   p_cons 9.038462e-04   p_joint 3.769231e-03

Joint ci ratio: 5.617779e-02	ci left: 3.599005e-03	ci right 3.807779e-03	k: 4850	n:1310000
Cons ci ratio: 1.137270e-01	ci left: 8.545665e-04	ci right 9.583475e-04	k: 1186	n:1310000
KS ci ratio: 4.373509e-03	ci left: 3.793030e-01	ci right 3.809662e-01	k: 497976	n:1310000
KRT74   1310000 perm   1011 sec   (1296 perm/sec)   p_kst 3.801344e-01   p_cons 9.053435e-04   p_joint 3.702290e-03

Joint ci ratio: 5.595902e-02	ci left: 3.600124e-03	ci right 3.808124e-03	k: 4888	n:1320000
Cons ci ratio: 1.133458e-01	ci left: 8.539810e-04	ci right 9.573199e-04	k: 1194	n:1320000
KS ci ratio: 4.357109e-03	ci left: 3.792847e-01	ci right 3.809416e-01	k: 501749	n:1320000
KRT74   1320000 perm   1025 sec   (1288 perm/sec)   p_kst 3.801129e-01   p_cons 9.045455e-04   p_joint 3.703030e-03

Joint ci ratio: 5.131534e-02	ci left: 4.256302e-03	ci right 4.481203e-03	k: 5809	n:1330000
Cons ci ratio: 1.130153e-01	ci left: 8.526743e-04	ci right 9.555342e-04	k: 1201	n:1330000
KS ci ratio: 4.340990e-03	ci left: 3.792561e-01	ci right 3.809068e-01	k: 505508	n:1330000
KRT74   1330000 perm   1038 sec   (1281 perm/sec)   p_kst 3.800812e-01   p_cons 9.030075e-04   p_joint 4.367669e-03

Joint ci ratio: 5.113967e-02	ci left: 4.254007e-03	ci right 4.477995e-03	k: 5849	n:1340000
Cons ci ratio: 1.125481e-01	ci left: 8.535632e-04	ci right 9.560764e-04	k: 1211	n:1340000
KS ci ratio: 4.325028e-03	ci left: 3.792303e-01	ci right 3.808747e-01	k: 509270	n:1340000
KRT74   1340000 perm   1052 sec   (1274 perm/sec)   p_kst 3.800522e-01   p_cons 9.037313e-04   p_joint 4.364925e-03

Joint ci ratio: 5.091806e-02	ci left: 4.259792e-03	ci right 4.483084e-03	k: 5900	n:1350000
Cons ci ratio: 1.116757e-01	ci left: 8.609201e-04	ci right 9.634627e-04	k: 1230	n:1350000
KS ci ratio: 4.309017e-03	ci left: 3.792292e-01	ci right 3.808676e-01	k: 513065	n:1350000
KRT74   1350000 perm   1065 sec   (1267 perm/sec)   p_kst 3.800481e-01   p_cons 9.111111e-04   p_joint 4.370370e-03

Joint ci ratio: 4.905038e-02	ci left: 4.559591e-03	ci right 4.789585e-03	k: 6356	n:1360000
Cons ci ratio: 1.111800e-01	ci left: 8.624527e-04	ci right 9.646919e-04	k: 1241	n:1360000
KS ci ratio: 4.293585e-03	ci left: 3.791841e-01	ci right 3.808164e-01	k: 516800	n:1360000
KRT74   1360000 perm   1079 sec   (1261 perm/sec)   p_kst 3.800000e-01   p_cons 9.125000e-04   p_joint 4.673529e-03

Joint ci ratio: 4.885090e-02	ci left: 4.563802e-03	ci right 4.793045e-03	k: 6408	n:1370000
Cons ci ratio: 1.105584e-01	ci left: 8.660931e-04	ci right 9.681525e-04	k: 1255	n:1370000
KS ci ratio: 4.277912e-03	ci left: 3.791842e-01	ci right 3.808105e-01	k: 520596	n:1370000
KRT74   1370000 perm   1093 sec   (1254 perm/sec)   p_kst 3.799971e-01   p_cons 9.160584e-04   p_joint 4.677372e-03

Joint ci ratio: 4.880967e-02	ci left: 4.538603e-03	ci right 4.766382e-03	k: 6419	n:1380000
Cons ci ratio: 1.102081e-01	ci left: 8.654541e-04	ci right 9.670940e-04	k: 1263	n:1380000
KS ci ratio: 4.262266e-03	ci left: 3.792002e-01	ci right 3.808206e-01	k: 524414	n:1380000
KRT74   1380000 perm   1107 sec   (1247 perm/sec)   p_kst 3.800101e-01   p_cons 9.152174e-04   p_joint 4.651449e-03

Joint ci ratio: 4.862064e-02	ci left: 4.541484e-03	ci right 4.768501e-03	k: 6469	n:1390000
Cons ci ratio: 1.097316e-01	ci left: 8.669238e-04	ci right 9.682677e-04	k: 1274	n:1390000
KS ci ratio: 4.246908e-03	ci left: 3.792030e-01	ci right 3.808176e-01	k: 528214	n:1390000
KRT74   1390000 perm   1120 sec   (1241 perm/sec)   p_kst 3.800101e-01   p_cons 9.165468e-04   p_joint 4.653957e-03

Joint ci ratio: 5.946600e-02	ci left: 3.002253e-03	ci right 3.186955e-03	k: 4331	n:1400000
Cons ci ratio: 1.091762e-01	ci left: 8.697631e-04	ci right 9.708913e-04	k: 1287	n:1400000
KS ci ratio: 4.374561e-03	ci left: 3.636984e-01	ci right 3.652936e-01	k: 510294	n:1400000
KRT74   1400000 perm   1134 sec   (1234 perm/sec)   p_kst 3.644957e-01   p_cons 9.192857e-04   p_joint 3.093571e-03

Joint ci ratio: 5.701070e-02	ci left: 3.246553e-03	ci right 3.437766e-03	k: 4711	n:1410000
Cons ci ratio: 1.087129e-01	ci left: 8.711834e-04	ci right 9.720194e-04	k: 1298	n:1410000
KS ci ratio: 4.359621e-03	ci left: 3.636375e-01	ci right 3.652269e-01	k: 513849	n:1410000
KRT74   1410000 perm   1149 sec   (1228 perm/sec)   p_kst 3.644319e-01   p_cons 9.205674e-04   p_joint 3.341135e-03

Joint ci ratio: 5.683616e-02	ci left: 3.243822e-03	ci right 3.434269e-03	k: 4740	n:1420000
Cons ci ratio: 1.084213e-01	ci left: 8.698440e-04	ci right 9.702376e-04	k: 1305	n:1420000
KS ci ratio: 4.344232e-03	ci left: 3.636414e-01	ci right 3.652253e-01	k: 517495	n:1420000
KRT74   1420000 perm   1163 sec   (1221 perm/sec)   p_kst 3.644331e-01   p_cons 9.190141e-04   p_joint 3.338028e-03

Joint ci ratio: 5.659777e-02	ci left: 3.248713e-03	ci right 3.438622e-03	k: 4780	n:1430000
Cons ci ratio: 1.079675e-01	ci left: 8.712454e-04	ci right 9.713531e-04	k: 1316	n:1430000
KS ci ratio: 4.329031e-03	ci left: 3.636426e-01	ci right 3.652209e-01	k: 521137	n:1430000
KRT74   1430000 perm   1177 sec   (1215 perm/sec)   p_kst 3.644315e-01   p_cons 9.202797e-04   p_joint 3.342657e-03

Joint ci ratio: 5.654506e-02	ci left: 3.232313e-03	ci right 3.421082e-03	k: 4789	n:1440000
Cons ci ratio: 1.075599e-01	ci left: 8.719524e-04	ci right 9.717391e-04	k: 1326	n:1440000
KS ci ratio: 4.313956e-03	ci left: 3.636472e-01	ci right 3.652200e-01	k: 524784	n:1440000
KRT74   1440000 perm   1191 sec   (1209 perm/sec)   p_kst 3.644333e-01   p_cons 9.208333e-04   p_joint 3.325694e-03

Joint ci ratio: 5.639236e-02	ci left: 3.227699e-03	ci right 3.415673e-03	k: 4815	n:1450000
Cons ci ratio: 1.073983e-01	ci left: 8.686233e-04	ci right 9.678703e-04	k: 1330	n:1450000
KS ci ratio: 4.298986e-03	ci left: 3.636573e-01	ci right 3.652247e-01	k: 528439	n:1450000
KRT74   1450000 perm   1206 sec   (1202 perm/sec)   p_kst 3.644407e-01   p_cons 9.172414e-04   p_joint 3.320690e-03

Joint ci ratio: 5.682074e-02	ci left: 3.156971e-03	ci right 3.342268e-03	k: 4743	n:1460000
Cons ci ratio: 1.067980e-01	ci left: 8.726727e-04	ci right 9.717900e-04	k: 1345	n:1460000
KS ci ratio: 4.282974e-03	ci left: 3.637966e-01	ci right 3.653587e-01	k: 532283	n:1460000
KRT74   1460000 perm   1221 sec   (1196 perm/sec)   p_kst 3.645774e-01   p_cons 9.212329e-04   p_joint 3.248630e-03

Joint ci ratio: 5.664197e-02	ci left: 3.155614e-03	ci right 3.340229e-03	k: 4773	n:1470000
Cons ci ratio: 1.066003e-01	ci left: 8.700467e-04	ci right 9.686714e-04	k: 1350	n:1470000
KS ci ratio: 4.268631e-03	ci left: 3.637722e-01	ci right 3.653290e-01	k: 535889	n:1470000
KRT74   1470000 perm   1235 sec   (1190 perm/sec)   p_kst 3.645503e-01   p_cons 9.183673e-04   p_joint 3.246939e-03

Joint ci ratio: 5.668430e-02	ci left: 3.129628e-03	ci right 3.312865e-03	k: 4766	n:1480000
Cons ci ratio: 1.064431e-01	ci left: 8.667986e-04	ci right 9.649011e-04	k: 1354	n:1480000
KS ci ratio: 4.254369e-03	ci left: 3.637549e-01	ci right 3.653064e-01	k: 539505	n:1480000
KRT74   1480000 perm   1249 sec   (1185 perm/sec)   p_kst 3.645304e-01   p_cons 9.148649e-04   p_joint 3.220270e-03

Joint ci ratio: 5.653638e-02	ci left: 3.125165e-03	ci right 3.307647e-03	k: 4791	n:1490000
Cons ci ratio: 1.062474e-01	ci left: 8.642475e-04	ci right 9.618702e-04	k: 1359	n:1490000
KS ci ratio: 4.240015e-03	ci left: 3.637634e-01	ci right 3.653096e-01	k: 543159	n:1490000
KRT74   1490000 perm   1264 sec   (1179 perm/sec)   p_kst 3.645362e-01   p_cons 9.120805e-04   p_joint 3.215436e-03

Joint ci ratio: 5.631928e-02	ci left: 3.128649e-03	ci right 3.310610e-03	k: 4828	n:1500000
Cons ci ratio: 1.058202e-01	ci left: 8.656248e-04	ci right 9.629855e-04	k: 1370	n:1500000
KS ci ratio: 4.226292e-03	ci left: 3.637184e-01	ci right 3.652595e-01	k: 546733	n:1500000
KRT74   1500000 perm   1279 sec   (1173 perm/sec)   p_kst 3.644887e-01   p_cons 9.133333e-04   p_joint 3.218667e-03

Joint ci ratio: 5.658499e-02	ci left: 3.078547e-03	ci right 3.258466e-03	k: 4783	n:1510000
Cons ci ratio: 1.057048e-01	ci left: 8.618263e-04	ci right 9.586475e-04	k: 1373	n:1510000
KS ci ratio: 4.211714e-03	ci left: 3.637826e-01	ci right 3.653186e-01	k: 550471	n:1510000
KRT74   1510000 perm   1294 sec   (1167 perm/sec)   p_kst 3.645503e-01   p_cons 9.092715e-04   p_joint 3.167550e-03

Joint ci ratio: 5.678838e-02	ci left: 3.036240e-03	ci right 3.214346e-03	k: 4749	n:1520000
Cons ci ratio: 1.054367e-01	ci left: 8.606400e-04	ci right 9.570674e-04	k: 1380	n:1520000
KS ci ratio: 4.198233e-03	ci left: 3.637414e-01	ci right 3.652723e-01	k: 554050	n:1520000
KRT74   1520000 perm   1309 sec   (1161 perm/sec)   p_kst 3.645066e-01   p_cons 9.078947e-04   p_joint 3.124342e-03

Joint ci ratio: 5.659210e-02	ci left: 3.037658e-03	ci right 3.215211e-03	k: 4782	n:1530000
Cons ci ratio: 1.050192e-01	ci left: 8.620153e-04	ci right 9.581907e-04	k: 1391	n:1530000
KS ci ratio: 4.184326e-03	ci left: 3.637621e-01	ci right 3.652881e-01	k: 557723	n:1530000
KRT74   1530000 perm   1324 sec   (1155 perm/sec)   p_kst 3.645248e-01   p_cons 9.091503e-04   p_joint 3.125490e-03

Joint ci ratio: 5.663427e-02	ci left: 3.013451e-03	ci right 3.189725e-03	k: 4775	n:1540000
Cons ci ratio: 1.047937e-01	ci left: 8.602116e-04	ci right 9.559671e-04	k: 1397	n:1540000
KS ci ratio: 4.170381e-03	ci left: 3.638021e-01	ci right 3.653231e-01	k: 561426	n:1540000
KRT74   1540000 perm   1339 sec   (1150 perm/sec)   p_kst 3.645623e-01   p_cons 9.071429e-04   p_joint 3.100649e-03

Joint ci ratio: 5.651035e-02	ci left: 3.007366e-03	ci right 3.182886e-03	k: 4796	n:1550000
Cons ci ratio: 1.046443e-01	ci left: 8.571748e-04	ci right 9.524478e-04	k: 1401	n:1550000
KS ci ratio: 4.156933e-03	ci left: 3.638016e-01	ci right 3.653176e-01	k: 565067	n:1550000
KRT74   1550000 perm   1354 sec   (1144 perm/sec)   p_kst 3.645594e-01   p_cons 9.038710e-04   p_joint 3.094194e-03

Joint ci ratio: 5.463482e-02	ci left: 3.199225e-03	ci right 3.379550e-03	k: 5130	n:1560000
Cons ci ratio: 1.042730e-01	ci left: 8.579229e-04	ci right 9.529200e-04	k: 1411	n:1560000
KS ci ratio: 4.143213e-03	ci left: 3.638459e-01	ci right 3.653572e-01	k: 568778	n:1560000
KRT74   1560000 perm   1370 sec   (1139 perm/sec)   p_kst 3.646013e-01   p_cons 9.044872e-04   p_joint 3.288462e-03

Joint ci ratio: 5.445468e-02	ci left: 3.200208e-03	ci right 3.379976e-03	k: 5164	n:1570000
Cons ci ratio: 1.040523e-01	ci left: 8.561805e-04	ci right 9.507717e-04	k: 1417	n:1570000
KS ci ratio: 4.129673e-03	ci left: 3.638846e-01	ci right 3.653911e-01	k: 572481	n:1570000
KRT74   1570000 perm   1386 sec   (1133 perm/sec)   p_kst 3.646376e-01   p_cons 9.025478e-04   p_joint 3.289172e-03

Joint ci ratio: 5.430776e-02	ci left: 3.197434e-03	ci right 3.376546e-03	k: 5192	n:1580000
Cons ci ratio: 1.038329e-01	ci left: 8.544603e-04	ci right 9.486504e-04	k: 1423	n:1580000
KS ci ratio: 4.116659e-03	ci left: 3.638785e-01	ci right 3.653802e-01	k: 576114	n:1580000
KRT74   1580000 perm   1401 sec   (1128 perm/sec)   p_kst 3.646291e-01   p_cons 9.006329e-04   p_joint 3.286076e-03

Joint ci ratio: 5.449287e-02	ci left: 3.155610e-03	ci right 3.333000e-03	k: 5157	n:1590000
Cons ci ratio: 1.034341e-01	ci left: 8.558253e-04	ci right 9.497815e-04	k: 1434	n:1590000
KS ci ratio: 4.103985e-03	ci left: 3.638480e-01	ci right 3.653449e-01	k: 579708	n:1590000
KRT74   1590000 perm   1417 sec   (1122 perm/sec)   p_kst 3.645962e-01   p_cons 9.018868e-04   p_joint 3.243396e-03

Joint ci ratio: 5.220264e-02	ci left: 3.420182e-03	ci right 3.604122e-03	k: 5618	n:1600000
Cons ci ratio: 1.032187e-01	ci left: 8.541295e-04	ci right 9.476923e-04	k: 1440	n:1600000
KS ci ratio: 4.091184e-03	ci left: 3.638454e-01	ci right 3.653376e-01	k: 583346	n:1600000
KRT74   1600000 perm   1432 sec   (1117 perm/sec)   p_kst 3.645912e-01   p_cons 9.000000e-04   p_joint 3.511250e-03

Joint ci ratio: 5.244731e-02	ci left: 3.367061e-03	ci right 3.549018e-03	k: 5566	n:1610000
Cons ci ratio: 1.027561e-01	ci left: 8.566909e-04	ci right 9.500883e-04	k: 1453	n:1610000
KS ci ratio: 4.078278e-03	ci left: 3.638683e-01	ci right 3.653558e-01	k: 587025	n:1610000
KRT74   1610000 perm   1448 sec   (1112 perm/sec)   p_kst 3.646118e-01   p_cons 9.024845e-04   p_joint 3.457143e-03

Joint ci ratio: 5.228789e-02	ci left: 3.366990e-03	ci right 3.548373e-03	k: 5600	n:1620000
Cons ci ratio: 1.024395e-01	ci left: 8.568157e-04	ci right 9.499217e-04	k: 1462	n:1620000
KS ci ratio: 4.065639e-03	ci left: 3.638742e-01	ci right 3.653572e-01	k: 590677	n:1620000
KRT74   1620000 perm   1464 sec   (1107 perm/sec)   p_kst 3.646154e-01   p_cons 9.024691e-04   p_joint 3.456790e-03

Joint ci ratio: 5.212063e-02	ci left: 3.368131e-03	ci right 3.548978e-03	k: 5636	n:1630000
Cons ci ratio: 1.022999e-01	ci left: 8.539503e-04	ci right 9.466108e-04	k: 1466	n:1630000
KS ci ratio: 4.053305e-03	ci left: 3.638586e-01	ci right 3.653370e-01	k: 594294	n:1630000
KRT74   1630000 perm   1480 sec   (1102 perm/sec)   p_kst 3.645975e-01   p_cons 8.993865e-04   p_joint 3.457669e-03

Joint ci ratio: 5.210264e-02	ci left: 3.350000e-03	ci right 3.529810e-03	k: 5640	n:1640000
Cons ci ratio: 1.020568e-01	ci left: 8.529025e-04	ci right 9.452161e-04	k: 1473	n:1640000
KS ci ratio: 4.040982e-03	ci left: 3.638548e-01	ci right 3.653286e-01	k: 597930	n:1640000
KRT74   1640000 perm   1496 sec   (1096 perm/sec)   p_kst 3.645915e-01   p_cons 8.981707e-04   p_joint 3.439024e-03

Joint ci ratio: 5.195092e-02	ci left: 3.349437e-03	ci right 3.528677e-03	k: 5673	n:1650000
Cons ci ratio: 1.018154e-01	ci left: 8.518676e-04	ci right 9.438381e-04	k: 1480	n:1650000
KS ci ratio: 4.028480e-03	ci left: 3.638843e-01	ci right 3.653537e-01	k: 601621	n:1650000
KRT74   1650000 perm   1512 sec   (1091 perm/sec)   p_kst 3.646188e-01   p_cons 8.969697e-04   p_joint 3.438182e-03

Joint ci ratio: 5.211763e-02	ci left: 3.307853e-03	ci right 3.485453e-03	k: 5637	n:1660000
Cons ci ratio: 1.015415e-01	ci left: 8.514326e-04	ci right 9.430942e-04	k: 1488	n:1660000
KS ci ratio: 4.016496e-03	ci left: 3.638671e-01	ci right 3.653321e-01	k: 605235	n:1660000
KRT74   1660000 perm   1529 sec   (1086 perm/sec)   p_kst 3.645994e-01   p_cons 8.963855e-04   p_joint 3.395783e-03

Joint ci ratio: 5.197038e-02	ci left: 3.306958e-03	ci right 3.483993e-03	k: 5669	n:1670000
Cons ci ratio: 1.012360e-01	ci left: 8.515868e-04	ci right 9.429727e-04	k: 1497	n:1670000
KS ci ratio: 4.004271e-03	ci left: 3.638903e-01	ci right 3.653509e-01	k: 608916	n:1670000
KRT74   1670000 perm   1545 sec   (1081 perm/sec)   p_kst 3.646204e-01   p_cons 8.964072e-04   p_joint 3.394611e-03

Joint ci ratio: 5.177884e-02	ci left: 3.311949e-03	ci right 3.488579e-03	k: 5711	n:1680000
Cons ci ratio: 1.008329e-01	ci left: 8.534802e-04	ci right 9.446830e-04	k: 1509	n:1680000
KS ci ratio: 3.992265e-03	ci left: 3.639007e-01	ci right 3.653569e-01	k: 612576	n:1680000
KRT74   1680000 perm   1561 sec   (1076 perm/sec)   p_kst 3.646286e-01   p_cons 8.982143e-04   p_joint 3.399405e-03

Joint ci ratio: 5.174301e-02	ci left: 3.297024e-03	ci right 3.472732e-03	k: 5719	n:1690000
Cons ci ratio: 1.006332e-01	ci left: 8.518908e-04	ci right 9.427329e-04	k: 1515	n:1690000
KS ci ratio: 3.980433e-03	ci left: 3.639033e-01	ci right 3.653552e-01	k: 616223	n:1690000
KRT74   1690000 perm   1578 sec   (1071 perm/sec)   p_kst 3.646290e-01   p_cons 8.964497e-04   p_joint 3.384024e-03

Joint ci ratio: 5.155396e-02	ci left: 3.302017e-03	ci right 3.477329e-03	k: 5761	n:1700000
Cons ci ratio: 1.003029e-01	ci left: 8.526143e-04	ci right 9.432175e-04	k: 1525	n:1700000
KS ci ratio: 3.968735e-03	ci left: 3.639023e-01	ci right 3.653499e-01	k: 619864	n:1700000
KRT74   1700000 perm   1594 sec   (1066 perm/sec)   p_kst 3.646259e-01   p_cons 8.970588e-04   p_joint 3.388824e-03

Joint ci ratio: 5.138474e-02	ci left: 3.304643e-03	ci right 3.479502e-03	k: 5799	n:1710000
Cons ci ratio: 1.000737e-01	ci left: 8.516192e-04	ci right 9.418978e-04	k: 1532	n:1710000
KS ci ratio: 3.956965e-03	ci left: 3.639218e-01	ci right 3.653652e-01	k: 623540	n:1710000
KRT74   1710000 perm   1611 sec   (1062 perm/sec)   p_kst 3.646433e-01   p_cons 8.959064e-04   p_joint 3.391228e-03

Joint ci ratio: 5.132313e-02	ci left: 3.293464e-03	ci right 3.467517e-03	k: 5813	n:1720000
Cons ci ratio: 9.991105e-02	ci left: 8.495022e-04	ci right 9.394013e-04	k: 1537	n:1720000
KS ci ratio: 3.945517e-03	ci left: 3.639155e-01	ci right 3.653547e-01	k: 627172	n:1720000
KRT74   1720000 perm   1628 sec   (1057 perm/sec)   p_kst 3.646349e-01   p_cons 8.936047e-04   p_joint 3.379651e-03

Outputting figure to mutsig2_images.part000000000093/KRT74.5_1626_1720000_0.36463_0.0008936_0.0033797.png
                gene_name: KRT74
               theta_stop: 0.100 
                    nperm: 1720000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.00089 
      ci_cons_bounds_left: 0.00085 
     ci_cons_bounds_right: 0.00094 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0033 
    ci_joint_bounds_right: 0.0035 

Current progress: 34 percent done.
KRT85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
Cons ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
KS ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KRT85   10000 perm   2 sec   (5546 perm/sec)   p_kst 5.300000e-03   p_cons 2.915000e-01   p_joint 1.740000e-02

Joint ci ratio: 1.637627e-01	ci left: 2.556543e-02	ci right 3.017320e-02	k: 556	n:20000
Cons ci ratio: 4.107497e-02	ci left: 3.064268e-01	ci right 3.193277e-01	k: 6257	n:20000
KS ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
KRT85   20000 perm   4 sec   (4945 perm/sec)   p_kst 7.050000e-03   p_cons 3.128500e-01   p_joint 2.780000e-02

Joint ci ratio: 1.246089e-01	ci left: 2.994019e-02	ci right 3.395113e-02	k: 957	n:30000
Cons ci ratio: 3.358185e-02	ci left: 3.070576e-01	ci right 3.175788e-01	k: 9369	n:30000
KS ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
KRT85   30000 perm   6 sec   (4700 perm/sec)   p_kst 7.133333e-03   p_cons 3.123000e-01   p_joint 3.190000e-02

Joint ci ratio: 1.246563e-01	ci left: 2.261923e-02	ci right 2.565040e-02	k: 964	n:40000
Cons ci ratio: 2.911550e-02	ci left: 3.072866e-01	ci right 3.163907e-01	k: 12473	n:40000
KS ci ratio: 2.289542e-01	ci left: 6.442035e-03	ci right 8.130681e-03	k: 290	n:40000
KRT85   40000 perm   9 sec   (4549 perm/sec)   p_kst 7.250000e-03   p_cons 3.118250e-01   p_joint 2.410000e-02

Joint ci ratio: 1.378290e-01	ci left: 1.482174e-02	ci right 1.703498e-02	k: 795	n:50000
Cons ci ratio: 2.607268e-02	ci left: 3.072625e-01	ci right 3.153995e-01	k: 15566	n:50000
KS ci ratio: 2.079007e-01	ci left: 6.325885e-03	ci right 7.812210e-03	k: 352	n:50000
KRT85   50000 perm   11 sec   (4427 perm/sec)   p_kst 7.040000e-03   p_cons 3.113200e-01   p_joint 1.590000e-02

Joint ci ratio: 1.111746e-01	ci left: 1.917029e-02	ci right 2.144311e-02	k: 1217	n:60000
Cons ci ratio: 2.437098e-02	ci left: 2.975969e-01	ci right 3.049557e-01	k: 18076	n:60000
KS ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
KRT85   60000 perm   14 sec   (4323 perm/sec)   p_kst 6.950000e-03   p_cons 3.012667e-01   p_joint 2.028333e-02

Joint ci ratio: 1.165615e-01	ci left: 1.497244e-02	ci right 1.683943e-02	k: 1112	n:70000
Cons ci ratio: 2.261980e-02	ci left: 2.968200e-01	ci right 3.036251e-01	k: 21015	n:70000
KS ci ratio: 1.775635e-01	ci left: 6.300142e-03	ci right 7.541260e-03	k: 483	n:70000
KRT85   70000 perm   17 sec   (4230 perm/sec)   p_kst 6.900000e-03   p_cons 3.002143e-01   p_joint 1.588571e-02

Joint ci ratio: 9.010260e-02	ci left: 2.207011e-02	ci right 2.416467e-02	k: 1848	n:80000
Cons ci ratio: 2.114585e-02	ci left: 2.972991e-01	ci right 3.036654e-01	k: 24038	n:80000
KS ci ratio: 1.751107e-01	ci left: 5.679737e-03	ci right 6.781532e-03	k: 497	n:80000
KRT85   80000 perm   19 sec   (4145 perm/sec)   p_kst 6.212500e-03   p_cons 3.004750e-01   p_joint 2.310000e-02

Joint ci ratio: 9.715538e-02	ci left: 1.690278e-02	ci right 1.863961e-02	k: 1598	n:90000
Cons ci ratio: 1.990644e-02	ci left: 2.981150e-01	ci right 3.041201e-01	k: 27100	n:90000
KS ci ratio: 1.672499e-01	ci left: 5.559117e-03	ci right 6.584223e-03	k: 545	n:90000
KRT85   90000 perm   22 sec   (4066 perm/sec)   p_kst 6.055556e-03   p_cons 3.011111e-01   p_joint 1.775556e-02

Joint ci ratio: 9.977832e-02	ci left: 1.444103e-02	ci right 1.596728e-02	k: 1519	n:100000
Cons ci ratio: 1.891872e-02	ci left: 2.975196e-01	ci right 3.032120e-01	k: 30036	n:100000
KS ci ratio: 1.581002e-01	ci left: 5.626773e-03	ci right 6.602207e-03	k: 610	n:100000
KRT85   100000 perm   25 sec   (3993 perm/sec)   p_kst 6.100000e-03   p_cons 3.003600e-01   p_joint 1.519000e-02

Joint ci ratio: 9.790705e-02	ci left: 1.365990e-02	ci right 1.507496e-02	k: 1579	n:110000
Cons ci ratio: 1.804442e-02	ci left: 2.975103e-01	ci right 3.029366e-01	k: 33024	n:110000
KS ci ratio: 1.512075e-01	ci left: 5.613380e-03	ci right 6.540225e-03	k: 667	n:110000
KRT85   110000 perm   28 sec   (3921 perm/sec)   p_kst 6.063636e-03   p_cons 3.002182e-01   p_joint 1.435455e-02

Joint ci ratio: 9.510964e-02	ci left: 1.329402e-02	ci right 1.462962e-02	k: 1674	n:120000
Cons ci ratio: 1.726809e-02	ci left: 2.978235e-01	ci right 3.030194e-01	k: 36050	n:120000
KS ci ratio: 1.453459e-01	ci left: 5.586925e-03	ci right 6.470537e-03	k: 722	n:120000
KRT85   120000 perm   31 sec   (3853 perm/sec)   p_kst 6.016667e-03   p_cons 3.004167e-01   p_joint 1.395000e-02

Joint ci ratio: 9.245878e-02	ci left: 1.300748e-02	ci right 1.427589e-02	k: 1772	n:130000
Cons ci ratio: 1.661595e-02	ci left: 2.972870e-01	ci right 3.022758e-01	k: 38971	n:130000
KS ci ratio: 1.383394e-01	ci left: 5.713644e-03	ci right 6.570148e-03	k: 797	n:130000
KRT85   130000 perm   34 sec   (3788 perm/sec)   p_kst 6.130769e-03   p_cons 2.997769e-01   p_joint 1.363077e-02

Joint ci ratio: 9.349755e-02	ci left: 1.181989e-02	ci right 1.298615e-02	k: 1735	n:140000
Cons ci ratio: 1.601449e-02	ci left: 2.973008e-01	ci right 3.021075e-01	k: 41958	n:140000
KS ci ratio: 1.328711e-01	ci left: 5.767877e-03	ci right 6.595633e-03	k: 864	n:140000
KRT85   140000 perm   38 sec   (3725 perm/sec)   p_kst 6.171429e-03   p_cons 2.997000e-01   p_joint 1.239286e-02

Joint ci ratio: 9.473084e-02	ci left: 1.075170e-02	ci right 1.182732e-02	k: 1692	n:150000
Cons ci ratio: 1.508943e-02	ci left: 3.079592e-01	ci right 3.126481e-01	k: 46545	n:150000
KS ci ratio: 1.288412e-01	ci left: 5.738010e-03	ci right 6.534594e-03	k: 919	n:150000
KRT85   150000 perm   41 sec   (3665 perm/sec)   p_kst 6.126667e-03   p_cons 3.103000e-01   p_joint 1.128000e-02

Joint ci ratio: 9.164238e-02	ci left: 1.078783e-02	ci right 1.182999e-02	k: 1808	n:160000
Cons ci ratio: 1.461157e-02	ci left: 3.079961e-01	ci right 3.125358e-01	k: 49642	n:160000
KS ci ratio: 1.180013e-01	ci left: 6.445616e-03	ci right 7.259908e-03	k: 1095	n:160000
KRT85   160000 perm   44 sec   (3609 perm/sec)   p_kst 6.843750e-03   p_cons 3.102625e-01   p_joint 1.130000e-02

Joint ci ratio: 9.032034e-02	ci left: 1.046359e-02	ci right 1.145908e-02	k: 1862	n:170000
Cons ci ratio: 1.417836e-02	ci left: 3.079721e-01	ci right 3.123756e-01	k: 52729	n:170000
KS ci ratio: 1.141087e-01	ci left: 6.500555e-03	ci right 7.292872e-03	k: 1171	n:170000
KRT85   170000 perm   48 sec   (3555 perm/sec)   p_kst 6.888235e-03   p_cons 3.101706e-01   p_joint 1.095294e-02

Joint ci ratio: 7.923065e-02	ci left: 1.288479e-02	ci right 1.395319e-02	k: 2414	n:180000
Cons ci ratio: 1.378637e-02	ci left: 3.078027e-01	ci right 3.120812e-01	k: 55789	n:180000
KS ci ratio: 1.115263e-01	ci left: 6.436334e-03	ci right 7.201901e-03	k: 1226	n:180000
KRT85   180000 perm   51 sec   (3501 perm/sec)   p_kst 6.811111e-03   p_cons 3.099389e-01   p_joint 1.341111e-02

Joint ci ratio: 8.064000e-02	ci left: 1.178858e-02	ci right 1.278428e-02	k: 2333	n:190000
Cons ci ratio: 1.341016e-02	ci left: 3.081308e-01	ci right 3.122960e-01	k: 58940	n:190000
KS ci ratio: 1.084324e-01	ci left: 6.460990e-03	ci right 7.206808e-03	k: 1297	n:190000
KRT85   190000 perm   55 sec   (3451 perm/sec)   p_kst 6.826316e-03   p_cons 3.102105e-01   p_joint 1.227895e-02

Joint ci ratio: 8.273413e-02	ci left: 1.064053e-02	ci right 1.156372e-02	k: 2219	n:200000
Cons ci ratio: 1.306498e-02	ci left: 3.083676e-01	ci right 3.124279e-01	k: 62079	n:200000
KS ci ratio: 1.056213e-01	ci left: 6.478574e-03	ci right 7.205830e-03	k: 1367	n:200000
KRT85   200000 perm   59 sec   (3400 perm/sec)   p_kst 6.835000e-03   p_cons 3.103950e-01   p_joint 1.109500e-02

Joint ci ratio: 8.105732e-02	ci left: 1.056761e-02	ci right 1.146501e-02	k: 2312	n:210000
Cons ci ratio: 1.276303e-02	ci left: 3.079841e-01	ci right 3.119449e-01	k: 65092	n:210000
KS ci ratio: 1.033442e-01	ci left: 6.452952e-03	ci right 7.160765e-03	k: 1428	n:210000
KRT85   210000 perm   63 sec   (3353 perm/sec)   p_kst 6.800000e-03   p_cons 3.099619e-01   p_joint 1.100952e-02

Joint ci ratio: 7.388910e-02	ci left: 1.216484e-02	ci right 1.310261e-02	k: 2778	n:220000
Cons ci ratio: 1.246557e-02	ci left: 3.081675e-01	ci right 3.120375e-01	k: 68222	n:220000
KS ci ratio: 1.010378e-01	ci left: 6.451968e-03	ci right 7.142941e-03	k: 1494	n:220000
KRT85   220000 perm   67 sec   (3305 perm/sec)   p_kst 6.790909e-03   p_cons 3.101000e-01   p_joint 1.262727e-02

Joint ci ratio: 7.245868e-02	ci left: 1.210970e-02	ci right 1.302438e-02	k: 2889	n:230000
Cons ci ratio: 1.219046e-02	ci left: 3.082490e-01	ci right 3.120340e-01	k: 71332	n:230000
KS ci ratio: 9.859343e-02	ci left: 6.489400e-03	ci right 7.166596e-03	k: 1569	n:230000
KRT85   230000 perm   71 sec   (3258 perm/sec)   p_kst 6.821739e-03   p_cons 3.101391e-01   p_joint 1.256087e-02

Outputting figure to mutsig2_images.part000000000093/KRT85.5_1560_230000_0.0068217_0.31014_0.012561.png
                gene_name: KRT85
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.0068 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 35 percent done.
KRTAP10-11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.294683e-02	ci left: 8.956973e-01	ci right 9.074676e-01	k: 9017	n:10000
Cons ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
KS ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
KRTAP10-11   10000 perm   2 sec   (6634 perm/sec)   p_kst 6.823000e-01   p_cons 4.052000e-01   p_joint 9.017000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-11.5_901_10000_0.6823_0.4052_0.9017.png
                gene_name: KRTAP10-11
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 36 percent done.
KMO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.551852e-02	ci left: 2.548856e-01	ci right 2.722523e-01	k: 2635	n:10000
Cons ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
KS ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
KMO   10000 perm   2 sec   (5733 perm/sec)   p_kst 1.203000e-01   p_cons 2.351000e-01   p_joint 2.635000e-01

Joint ci ratio: 6.178335e-02	ci left: 1.623483e-01	ci right 1.727485e-01	k: 3350	n:20000
Cons ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
KS ci ratio: 7.389360e-02	ci left: 1.187734e-01	ci right 1.279364e-01	k: 2466	n:20000
KMO   20000 perm   4 sec   (5082 perm/sec)   p_kst 1.233000e-01   p_cons 2.283000e-01   p_joint 1.675000e-01

Outputting figure to mutsig2_images.part000000000093/KMO.4_1521_20000_0.1233_0.2283_0.1675.png
                gene_name: KMO
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
KRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 3.328544e-02	ci left: 5.712572e-01	ci right 5.906956e-01	k: 5810	n:10000
KRT1   10000 perm   2 sec   (5472 perm/sec)   p_kst 5.810000e-01   p_cons 1.586000e-01   p_joint 3.945000e-01

Outputting figure to mutsig2_images.part000000000093/KRT1.4_1971_10000_0.581_0.1586_0.3945.png
                gene_name: KRT1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 39 percent done.
KRT15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
Cons ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
KS ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
KRT15   10000 perm   2 sec   (5995 perm/sec)   p_kst 6.195000e-01   p_cons 2.429000e-01   p_joint 6.339000e-01

Outputting figure to mutsig2_images.part000000000093/KRT15.4_1403_10000_0.6195_0.2429_0.6339.png
                gene_name: KRT15
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 41 percent done.
KRT31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
KRT31   10000 perm   2 sec   (6416 perm/sec)   p_kst 9.525000e-01   p_cons 4.661000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT31.4_1279_10000_0.9525_0.4661_1.png
                gene_name: KRT31
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
KRT32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
KS ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KRT32   10000 perm   2 sec   (6418 perm/sec)   p_kst 8.330000e-01   p_cons 8.670000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT32.4_1375_10000_0.833_0.867_1.png
                gene_name: KRT32
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
KRT34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
KS ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KRT34   10000 perm   2 sec   (5775 perm/sec)   p_kst 8.843000e-01   p_cons 9.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT34.4_1339_10000_0.8843_0.9126_1.png
                gene_name: KRT34
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
KRT35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
Cons ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
KS ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KRT35   10000 perm   2 sec   (5717 perm/sec)   p_kst 4.666000e-01   p_cons 7.738000e-01   p_joint 6.792000e-01

Outputting figure to mutsig2_images.part000000000093/KRT35.4_1396_10000_0.4666_0.7738_0.6792.png
                gene_name: KRT35
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 46 percent done.
KRT36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
Cons ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
KS ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
KRT36   10000 perm   2 sec   (6016 perm/sec)   p_kst 6.858000e-01   p_cons 1.210000e-01   p_joint 3.051000e-01

Joint ci ratio: 2.833307e-02	ci left: 4.820492e-01	ci right 4.959540e-01	k: 9780	n:20000
Cons ci ratio: 7.583497e-02	ci left: 1.133630e-01	ci right 1.223484e-01	k: 2356	n:20000
KS ci ratio: 1.799451e-02	ci left: 6.971161e-01	ci right 7.098247e-01	k: 14070	n:20000
KRT36   20000 perm   4 sec   (5309 perm/sec)   p_kst 7.035000e-01   p_cons 1.178000e-01   p_joint 4.890000e-01

Outputting figure to mutsig2_images.part000000000093/KRT36.4_1432_20000_0.7035_0.1178_0.489.png
                gene_name: KRT36
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 47 percent done.
KRT39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KRT39   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.338000e-01   p_cons 4.750000e-02   p_joint 9.670000e-02

Joint ci ratio: 9.630520e-02	ci left: 7.280418e-02	ci right 8.021950e-02	k: 1529	n:20000
Cons ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
KS ci ratio: 6.968580e-02	ci left: 1.318193e-01	ci right 1.413866e-01	k: 2731	n:20000
KRT39   20000 perm   4 sec   (5516 perm/sec)   p_kst 1.365500e-01   p_cons 5.870000e-02   p_joint 7.645000e-02

Joint ci ratio: 1.064664e-01	ci left: 4.092707e-02	ci right 4.556191e-02	k: 1296	n:30000
Cons ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
KS ci ratio: 5.711666e-02	ci left: 1.318105e-01	ci right 1.395936e-01	k: 4070	n:30000
KRT39   30000 perm   6 sec   (5236 perm/sec)   p_kst 1.356667e-01   p_cons 6.036667e-02   p_joint 4.320000e-02

Joint ci ratio: 7.594206e-02	ci left: 6.007350e-02	ci right 6.484026e-02	k: 2497	n:40000
Cons ci ratio: 7.735556e-02	ci left: 5.798672e-02	ci right 6.267736e-02	k: 2412	n:40000
KS ci ratio: 4.988545e-02	ci left: 1.303790e-01	ci right 1.370743e-01	k: 5348	n:40000
KRT39   40000 perm   8 sec   (5060 perm/sec)   p_kst 1.337000e-01   p_cons 6.030000e-02   p_joint 6.242500e-02

Outputting figure to mutsig2_images.part000000000093/KRT39.4_1504_40000_0.1337_0.0603_0.062425.png
                gene_name: KRT39
               theta_stop: 0.077 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 49 percent done.
KRT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
Cons ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
KS ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
KRT8   10000 perm   2 sec   (5912 perm/sec)   p_kst 6.062000e-01   p_cons 8.072000e-01   p_joint 8.502000e-01

Outputting figure to mutsig2_images.part000000000093/KRT8.4_1484_10000_0.6062_0.8072_0.8502.png
                gene_name: KRT8
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 50 percent done.
KRT86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 4.816114e-02	ci left: 3.887854e-01	ci right 4.080738e-01	k: 3984	n:10000
KRT86   10000 perm   2 sec   (6262 perm/sec)   p_kst 3.984000e-01   p_cons 5.700000e-02   p_joint 3.120000e-01

Joint ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
Cons ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
KS ci ratio: 3.452459e-02	ci left: 3.851255e-01	ci right 3.987059e-01	k: 7838	n:20000
KRT86   20000 perm   4 sec   (5504 perm/sec)   p_kst 3.919000e-01   p_cons 5.365000e-02   p_joint 1.034000e-01

Joint ci ratio: 6.764525e-02	ci left: 9.725116e-02	ci right 1.040931e-01	k: 3019	n:30000
Cons ci ratio: 9.861510e-02	ci left: 4.756077e-02	ci right 5.252683e-02	k: 1500	n:30000
KS ci ratio: 2.824343e-02	ci left: 3.854723e-01	ci right 3.965489e-01	k: 11730	n:30000
KRT86   30000 perm   6 sec   (5209 perm/sec)   p_kst 3.910000e-01   p_cons 5.000000e-02   p_joint 1.006333e-01

Outputting figure to mutsig2_images.part000000000093/KRT86.4_1497_30000_0.391_0.05_0.10063.png
                gene_name: KRT86
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 51 percent done.
KRTAP1-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
Cons ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
KS ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
KRTAP1-3   10000 perm   1 sec   (6989 perm/sec)   p_kst 4.431000e-01   p_cons 9.798000e-01   p_joint 6.488000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP1-3.4_508_10000_0.4431_0.9798_0.6488.png
                gene_name: KRTAP1-3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 53 percent done.
KRTAP10-10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
Cons ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
KS ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
KRTAP10-10   10000 perm   1 sec   (6775 perm/sec)   p_kst 6.859000e-01   p_cons 3.509000e-01   p_joint 8.746000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-10.4_760_10000_0.6859_0.3509_0.8746.png
                gene_name: KRTAP10-10
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 54 percent done.
KRTAP10-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
Cons ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
KRTAP10-3   10000 perm   2 sec   (6444 perm/sec)   p_kst 4.049000e-01   p_cons 4.788000e-01   p_joint 6.101000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-3.4_670_10000_0.4049_0.4788_0.6101.png
                gene_name: KRTAP10-3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
KNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 4.083508e-02	ci left: 4.696656e-01	ci right 4.893464e-01	k: 4795	n:10000
KNG1   10000 perm   2 sec   (5952 perm/sec)   p_kst 4.795000e-01   p_cons 2.432000e-01   p_joint 5.210000e-01

Outputting figure to mutsig2_images.part000000000093/KNG1.3_2060_10000_0.4795_0.2432_0.521.png
                gene_name: KNG1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
KPNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KS ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
KPNA2   10000 perm   2 sec   (6252 perm/sec)   p_kst 7.502000e-01   p_cons 4.685000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA2.3_1630_10000_0.7502_0.4685_0.7677.png
                gene_name: KPNA2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 58 percent done.
KPNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
KPNA4   10000 perm   2 sec   (5994 perm/sec)   p_kst 3.915000e-01   p_cons 4.090000e-01   p_joint 4.083000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA4.3_1634_10000_0.3915_0.409_0.4083.png
                gene_name: KPNA4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 59 percent done.
KPNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
KS ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
KPNA6   10000 perm   2 sec   (5964 perm/sec)   p_kst 7.574000e-01   p_cons 5.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNA6.3_1667_10000_0.7574_0.5284_1.png
                gene_name: KPNA6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
KPNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
Cons ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
KPNB1   10000 perm   2 sec   (5919 perm/sec)   p_kst 7.370000e-02   p_cons 3.293000e-01   p_joint 9.690000e-02

Joint ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
Cons ci ratio: 3.923825e-02	ci left: 3.263188e-01	ci right 3.394298e-01	k: 6657	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
KPNB1   20000 perm   4 sec   (5233 perm/sec)   p_kst 7.235000e-02   p_cons 3.328500e-01   p_joint 7.750000e-02

Outputting figure to mutsig2_images.part000000000093/KPNB1.3_2719_20000_0.07235_0.33285_0.0775.png
                gene_name: KPNB1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 62 percent done.
KRI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
KRI1   10000 perm   2 sec   (5861 perm/sec)   p_kst 2.623000e-01   p_cons 3.829000e-01   p_joint 4.169000e-01

Outputting figure to mutsig2_images.part000000000093/KRI1.3_2206_10000_0.2623_0.3829_0.4169.png
                gene_name: KRI1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 64 percent done.
KRT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
KS ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
KRT14   10000 perm   2 sec   (6055 perm/sec)   p_kst 8.923000e-01   p_cons 4.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT14.3_1451_10000_0.8923_0.4867_1.png
                gene_name: KRT14
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KRT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
KRT16   10000 perm   2 sec   (6017 perm/sec)   p_kst 5.192000e-01   p_cons 9.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT16.3_1454_10000_0.5192_0.9306_1.png
                gene_name: KRT16
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KRT33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
Cons ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
KS ci ratio: 3.538158e-02	ci left: 5.411876e-01	ci right 5.607827e-01	k: 5510	n:10000
KRT33A   10000 perm   2 sec   (6190 perm/sec)   p_kst 5.510000e-01   p_cons 1.325000e-01   p_joint 4.884000e-01

Joint ci ratio: 3.600713e-02	ci left: 3.653452e-01	ci right 3.787920e-01	k: 7441	n:20000
Cons ci ratio: 7.080039e-02	ci left: 1.281747e-01	ci right 1.376323e-01	k: 2657	n:20000
KS ci ratio: 2.500501e-02	ci left: 5.443750e-01	ci right 5.582101e-01	k: 11026	n:20000
KRT33A   20000 perm   4 sec   (5474 perm/sec)   p_kst 5.513000e-01   p_cons 1.328500e-01   p_joint 3.720500e-01

Outputting figure to mutsig2_images.part000000000093/KRT33A.3_1243_20000_0.5513_0.13285_0.37205.png
                gene_name: KRT33A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 68 percent done.
KRT33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
Cons ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
KS ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
KRT33B   10000 perm   2 sec   (6035 perm/sec)   p_kst 2.335000e-01   p_cons 1.679000e-01   p_joint 2.216000e-01

Outputting figure to mutsig2_images.part000000000093/KRT33B.3_1243_10000_0.2335_0.1679_0.2216.png
                gene_name: KRT33B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 69 percent done.
KRT40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
Cons ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
KS ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
KRT40   10000 perm   2 sec   (6227 perm/sec)   p_kst 2.580000e-01   p_cons 3.196000e-01   p_joint 3.304000e-01

Outputting figure to mutsig2_images.part000000000093/KRT40.3_1324_10000_0.258_0.3196_0.3304.png
                gene_name: KRT40
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 70 percent done.
KRT76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
KS ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
KRT76   10000 perm   2 sec   (5816 perm/sec)   p_kst 4.979000e-01   p_cons 5.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT76.3_1953_10000_0.4979_0.5562_1.png
                gene_name: KRT76
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
KRT79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
KS ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
KRT79   10000 perm   2 sec   (6222 perm/sec)   p_kst 9.396000e-01   p_cons 9.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT79.3_1644_10000_0.9396_0.987_1.png
                gene_name: KRT79
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
KRT84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
KRT84   10000 perm   2 sec   (6165 perm/sec)   p_kst 3.280000e-01   p_cons 3.700000e-03   p_joint 5.350000e-02

Joint ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
Cons ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
KS ci ratio: 3.962570e-02	ci left: 3.219912e-01	ci right 3.350587e-01	k: 6570	n:20000
KRT84   20000 perm   4 sec   (5425 perm/sec)   p_kst 3.285000e-01   p_cons 3.450000e-03   p_joint 1.545000e-02

Joint ci ratio: 2.071094e-01	ci left: 1.057722e-02	ci right 1.305201e-02	k: 353	n:30000
Cons ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
KS ci ratio: 3.258417e-02	ci left: 3.200987e-01	ci right 3.307351e-01	k: 9762	n:30000
KRT84   30000 perm   6 sec   (5140 perm/sec)   p_kst 3.254000e-01   p_cons 3.700000e-03   p_joint 1.176667e-02

Joint ci ratio: 2.442117e-01	ci left: 5.618552e-03	ci right 7.204386e-03	k: 255	n:40000
Cons ci ratio: 3.307161e-01	ci left: 2.922113e-03	ci right 4.101780e-03	k: 139	n:40000
KS ci ratio: 2.814551e-02	ci left: 3.219546e-01	ci right 3.311706e-01	k: 13062	n:40000
KRT84   40000 perm   8 sec   (4956 perm/sec)   p_kst 3.265500e-01   p_cons 3.475000e-03   p_joint 6.375000e-03

Joint ci ratio: 2.383605e-01	ci left: 4.738858e-03	ci right 6.039583e-03	k: 268	n:50000
Cons ci ratio: 3.055951e-01	ci left: 2.779382e-03	ci right 3.799634e-03	k: 163	n:50000
KS ci ratio: 2.524841e-02	ci left: 3.211540e-01	ci right 3.293863e-01	k: 16263	n:50000
KRT84   50000 perm   10 sec   (4812 perm/sec)   p_kst 3.252600e-01   p_cons 3.260000e-03   p_joint 5.360000e-03

Joint ci ratio: 2.288399e-01	ci left: 4.309840e-03	ci right 5.438871e-03	k: 291	n:60000
Cons ci ratio: 2.746620e-01	ci left: 2.919007e-03	ci right 3.863370e-03	k: 202	n:60000
KS ci ratio: 2.313440e-02	ci left: 3.198900e-01	ci right 3.273937e-01	k: 19418	n:60000
KRT84   60000 perm   13 sec   (4694 perm/sec)   p_kst 3.236333e-01   p_cons 3.366667e-03   p_joint 4.850000e-03

Joint ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
Cons ci ratio: 2.558279e-01	ci left: 2.915448e-03	ci right 3.783670e-03	k: 233	n:70000
KS ci ratio: 2.145153e-02	ci left: 3.194934e-01	ci right 3.264356e-01	k: 22607	n:70000
KRT84   70000 perm   15 sec   (4585 perm/sec)   p_kst 3.229571e-01   p_cons 3.328571e-03   p_joint 9.628571e-03

Joint ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
Cons ci ratio: 2.413184e-01	ci left: 2.890947e-03	ci right 3.695740e-03	k: 262	n:80000
KS ci ratio: 2.004986e-02	ci left: 3.200715e-01	ci right 3.265663e-01	k: 25865	n:80000
KRT84   80000 perm   18 sec   (4481 perm/sec)   p_kst 3.233125e-01   p_cons 3.275000e-03   p_joint 1.002500e-02

Joint ci ratio: 1.213220e-01	ci left: 1.077054e-02	ci right 1.217232e-02	k: 1031	n:90000
Cons ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
KS ci ratio: 1.895238e-02	ci left: 3.191250e-01	ci right 3.252421e-01	k: 28996	n:90000
KRT84   90000 perm   20 sec   (4392 perm/sec)   p_kst 3.221778e-01   p_cons 3.200000e-03   p_joint 1.145556e-02

Joint ci ratio: 1.177567e-01	ci left: 1.031421e-02	ci right 1.161439e-02	k: 1095	n:100000
Cons ci ratio: 2.151047e-01	ci left: 2.954016e-03	ci right 3.675268e-03	k: 330	n:100000
KS ci ratio: 1.795098e-02	ci left: 3.199821e-01	ci right 3.257881e-01	k: 32288	n:100000
KRT84   100000 perm   23 sec   (4301 perm/sec)   p_kst 3.228800e-01   p_cons 3.300000e-03   p_joint 1.095000e-02

Joint ci ratio: 1.203367e-01	ci left: 8.979267e-03	ci right 1.013772e-02	k: 1050	n:110000
Cons ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
KS ci ratio: 1.709387e-02	ci left: 3.206721e-01	ci right 3.262099e-01	k: 35578	n:110000
KRT84   110000 perm   26 sec   (4220 perm/sec)   p_kst 3.234364e-01   p_cons 3.281818e-03   p_joint 9.545455e-03

Joint ci ratio: 1.321117e-01	ci left: 6.801944e-03	ci right 7.772096e-03	k: 873	n:120000
Cons ci ratio: 1.976654e-01	ci left: 2.943784e-03	ci right 3.597252e-03	k: 391	n:120000
KS ci ratio: 1.636597e-02	ci left: 3.207951e-01	ci right 3.260968e-01	k: 38813	n:120000
KRT84   120000 perm   29 sec   (4140 perm/sec)   p_kst 3.234417e-01   p_cons 3.258333e-03   p_joint 7.275000e-03

Joint ci ratio: 1.112874e-01	ci left: 8.927445e-03	ci right 9.986917e-03	k: 1228	n:130000
Cons ci ratio: 1.885058e-01	ci left: 3.002852e-03	ci right 3.635008e-03	k: 430	n:130000
KS ci ratio: 1.571494e-02	ci left: 3.211490e-01	ci right 3.262435e-01	k: 42080	n:130000
KRT84   130000 perm   32 sec   (4063 perm/sec)   p_kst 3.236923e-01   p_cons 3.307692e-03   p_joint 9.446154e-03

Joint ci ratio: 1.103779e-01	ci left: 8.435493e-03	ci right 9.427863e-03	k: 1249	n:140000
Cons ci ratio: 1.828691e-01	ci left: 2.972251e-03	ci right 3.577182e-03	k: 457	n:140000
KS ci ratio: 1.514700e-02	ci left: 3.211351e-01	ci right 3.260436e-01	k: 45302	n:140000
KRT84   140000 perm   35 sec   (3994 perm/sec)   p_kst 3.235857e-01   p_cons 3.264286e-03   p_joint 8.921429e-03

Joint ci ratio: 1.110851e-01	ci left: 7.775749e-03	ci right 8.696745e-03	k: 1234	n:150000
Cons ci ratio: 1.769788e-01	ci left: 2.971462e-03	ci right 3.554667e-03	k: 488	n:150000
KS ci ratio: 1.465011e-02	ci left: 3.207202e-01	ci right 3.254600e-01	k: 48463	n:150000
KRT84   150000 perm   38 sec   (3923 perm/sec)   p_kst 3.230867e-01   p_cons 3.253333e-03   p_joint 8.226667e-03

Joint ci ratio: 1.099975e-01	ci left: 7.441623e-03	ci right 8.313851e-03	k: 1259	n:160000
Cons ci ratio: 1.717891e-01	ci left: 2.965061e-03	ci right 3.528177e-03	k: 518	n:160000
KS ci ratio: 1.420518e-02	ci left: 3.201723e-01	ci right 3.247591e-01	k: 51594	n:160000
KRT84   160000 perm   42 sec   (3854 perm/sec)   p_kst 3.224625e-01   p_cons 3.237500e-03   p_joint 7.868750e-03

Joint ci ratio: 1.064232e-01	ci left: 7.496084e-03	ci right 8.344356e-03	k: 1345	n:170000
Cons ci ratio: 1.662728e-01	ci left: 2.987823e-03	ci right 3.535216e-03	k: 553	n:170000
KS ci ratio: 1.377228e-02	ci left: 3.205188e-01	ci right 3.249696e-01	k: 54866	n:170000
KRT84   170000 perm   45 sec   (3787 perm/sec)   p_kst 3.227412e-01   p_cons 3.252941e-03   p_joint 7.911765e-03

Joint ci ratio: 8.142898e-02	ci left: 1.219323e-02	ci right 1.323366e-02	k: 2287	n:180000
Cons ci ratio: 1.616695e-01	ci left: 2.992317e-03	ci right 3.523881e-03	k: 585	n:180000
KS ci ratio: 1.337804e-02	ci left: 3.207844e-01	ci right 3.251102e-01	k: 58130	n:180000
KRT84   180000 perm   48 sec   (3726 perm/sec)   p_kst 3.229444e-01   p_cons 3.250000e-03   p_joint 1.270556e-02

Joint ci ratio: 8.267201e-02	ci left: 1.121100e-02	ci right 1.218293e-02	k: 2221	n:190000
Cons ci ratio: 1.574285e-01	ci left: 2.996524e-03	ci right 3.513553e-03	k: 617	n:190000
KS ci ratio: 1.301990e-02	ci left: 3.208869e-01	ci right 3.250974e-01	k: 61368	n:190000
KRT84   190000 perm   52 sec   (3668 perm/sec)   p_kst 3.229895e-01   p_cons 3.247368e-03   p_joint 1.168947e-02

Joint ci ratio: 6.041643e-02	ci left: 1.999180e-02	ci right 2.124215e-02	k: 4122	n:200000
Cons ci ratio: 1.532682e-01	ci left: 3.010091e-03	ci right 3.514476e-03	k: 651	n:200000
KS ci ratio: 1.269864e-02	ci left: 3.206512e-01	ci right 3.247540e-01	k: 64540	n:200000
KRT84   200000 perm   55 sec   (3608 perm/sec)   p_kst 3.227000e-01   p_cons 3.255000e-03   p_joint 2.061000e-02

Joint ci ratio: 6.809945e-02	ci left: 1.500407e-02	ci right 1.606651e-02	k: 3261	n:210000
Cons ci ratio: 1.398276e-01	ci left: 3.467790e-03	ci right 3.993673e-03	k: 782	n:210000
KS ci ratio: 1.239733e-02	ci left: 3.205342e-01	ci right 3.245374e-01	k: 67732	n:210000
KRT84   210000 perm   59 sec   (3552 perm/sec)   p_kst 3.225333e-01   p_cons 3.723810e-03   p_joint 1.552857e-02

Joint ci ratio: 6.319154e-02	ci left: 1.664738e-02	ci right 1.773812e-02	k: 3781	n:220000
Cons ci ratio: 1.363865e-01	ci left: 3.485702e-03	ci right 4.000236e-03	k: 822	n:220000
KS ci ratio: 1.210920e-02	ci left: 3.206921e-01	ci right 3.246035e-01	k: 70982	n:220000
KRT84   220000 perm   63 sec   (3500 perm/sec)   p_kst 3.226455e-01   p_cons 3.736364e-03   p_joint 1.718636e-02

Joint ci ratio: 6.227627e-02	ci left: 1.640711e-02	ci right 1.746598e-02	k: 3894	n:230000
Cons ci ratio: 1.332650e-01	ci left: 3.497997e-03	ci right 4.001593e-03	k: 861	n:230000
KS ci ratio: 1.184262e-02	ci left: 3.207504e-01	ci right 3.245758e-01	k: 74212	n:230000
KRT84   230000 perm   67 sec   (3448 perm/sec)   p_kst 3.226609e-01   p_cons 3.743478e-03   p_joint 1.693043e-02

Joint ci ratio: 6.253568e-02	ci left: 1.560433e-02	ci right 1.661574e-02	k: 3865	n:240000
Cons ci ratio: 1.296284e-01	ci left: 3.549707e-03	ci right 4.045728e-03	k: 910	n:240000
KS ci ratio: 1.159390e-02	ci left: 3.207673e-01	ci right 3.245120e-01	k: 77433	n:240000
KRT84   240000 perm   71 sec   (3396 perm/sec)   p_kst 3.226375e-01   p_cons 3.791667e-03   p_joint 1.610417e-02

Joint ci ratio: 6.249872e-02	ci left: 1.500758e-02	ci right 1.597970e-02	k: 3872	n:250000
Cons ci ratio: 1.271411e-01	ci left: 3.547094e-03	ci right 4.032522e-03	k: 946	n:250000
KS ci ratio: 1.135460e-02	ci left: 3.209993e-01	ci right 3.246688e-01	k: 80708	n:250000
KRT84   250000 perm   75 sec   (3348 perm/sec)   p_kst 3.228320e-01   p_cons 3.784000e-03   p_joint 1.548800e-02

Joint ci ratio: 6.018589e-02	ci left: 1.557043e-02	ci right 1.654040e-02	k: 4173	n:260000
Cons ci ratio: 1.252402e-01	ci left: 3.518681e-03	ci right 3.992487e-03	k: 975	n:260000
KS ci ratio: 1.113708e-02	ci left: 3.209184e-01	ci right 3.245163e-01	k: 83906	n:260000
KRT84   260000 perm   79 sec   (3300 perm/sec)   p_kst 3.227154e-01   p_cons 3.750000e-03   p_joint 1.605000e-02

Joint ci ratio: 5.923145e-02	ci left: 1.548992e-02	ci right 1.643903e-02	k: 4309	n:270000
Cons ci ratio: 1.226284e-01	ci left: 3.539095e-03	ci right 4.004990e-03	k: 1017	n:270000
KS ci ratio: 1.092030e-02	ci left: 3.212954e-01	ci right 3.248269e-01	k: 87226	n:270000
KRT84   270000 perm   83 sec   (3256 perm/sec)   p_kst 3.230593e-01   p_cons 3.766667e-03   p_joint 1.595926e-02

Joint ci ratio: 5.903336e-02	ci left: 1.504568e-02	ci right 1.596439e-02	k: 4340	n:280000
Cons ci ratio: 1.206889e-01	ci left: 3.526968e-03	ci right 3.983398e-03	k: 1050	n:280000
KS ci ratio: 1.073015e-02	ci left: 3.210576e-01	ci right 3.245247e-01	k: 90381	n:280000
KRT84   280000 perm   87 sec   (3210 perm/sec)   p_kst 3.227893e-01   p_cons 3.750000e-03   p_joint 1.550000e-02

Joint ci ratio: 5.903558e-02	ci left: 1.453354e-02	ci right 1.542101e-02	k: 4342	n:290000
Cons ci ratio: 1.192256e-01	ci left: 3.492309e-03	ci right 3.938389e-03	k: 1076	n:290000
KS ci ratio: 1.054651e-02	ci left: 3.209641e-01	ci right 3.243705e-01	k: 93573	n:290000
KRT84   290000 perm   92 sec   (3165 perm/sec)   p_kst 3.226655e-01   p_cons 3.710345e-03   p_joint 1.497241e-02

Joint ci ratio: 5.923766e-02	ci left: 1.396030e-02	ci right 1.481578e-02	k: 4315	n:300000
Cons ci ratio: 1.175471e-01	ci left: 3.476171e-03	ci right 3.913503e-03	k: 1107	n:300000
KS ci ratio: 1.037081e-02	ci left: 3.209273e-01	ci right 3.242762e-01	k: 96780	n:300000
KRT84   300000 perm   96 sec   (3124 perm/sec)   p_kst 3.226000e-01   p_cons 3.690000e-03   p_joint 1.438333e-02

Joint ci ratio: 5.844659e-02	ci left: 1.388500e-02	ci right 1.472412e-02	k: 4433	n:310000
Cons ci ratio: 1.156323e-01	ci left: 3.479910e-03	ci right 3.910095e-03	k: 1144	n:310000
KS ci ratio: 1.019998e-02	ci left: 3.210479e-01	ci right 3.243425e-01	k: 100035	n:310000
KRT84   310000 perm   101 sec   (3082 perm/sec)   p_kst 3.226935e-01   p_cons 3.690323e-03   p_joint 1.430000e-02

Joint ci ratio: 5.887186e-02	ci left: 1.326314e-02	ci right 1.407070e-02	k: 4372	n:320000
Cons ci ratio: 1.144415e-01	ci left: 3.444001e-03	ci right 3.865066e-03	k: 1168	n:320000
KS ci ratio: 1.004049e-02	ci left: 3.210241e-01	ci right 3.242666e-01	k: 103246	n:320000
KRT84   320000 perm   105 sec   (3042 perm/sec)   p_kst 3.226438e-01   p_cons 3.650000e-03   p_joint 1.366250e-02

Joint ci ratio: 6.069628e-02	ci left: 1.210281e-02	ci right 1.286336e-02	k: 4118	n:330000
Cons ci ratio: 1.123919e-01	ci left: 3.466247e-03	ci right 3.881938e-03	k: 1211	n:330000
KS ci ratio: 9.890514e-03	ci left: 3.209022e-01	ci right 3.240949e-01	k: 106424	n:330000
KRT84   330000 perm   110 sec   (3002 perm/sec)   p_kst 3.224970e-01   p_cons 3.669697e-03   p_joint 1.247879e-02

Joint ci ratio: 5.999647e-02	ci left: 1.202782e-02	ci right 1.277464e-02	k: 4215	n:340000
Cons ci ratio: 1.101846e-01	ci left: 3.504408e-03	ci right 3.915887e-03	k: 1260	n:340000
KS ci ratio: 9.745291e-03	ci left: 3.208672e-01	ci right 3.240123e-01	k: 109629	n:340000
KRT84   340000 perm   115 sec   (2965 perm/sec)   p_kst 3.224382e-01   p_cons 3.705882e-03   p_joint 1.239706e-02

Joint ci ratio: 5.501179e-02	ci left: 1.390645e-02	ci right 1.469591e-02	k: 5004	n:350000
Cons ci ratio: 1.082269e-01	ci left: 3.532123e-03	ci right 3.939018e-03	k: 1306	n:350000
KS ci ratio: 9.603646e-03	ci left: 3.209543e-01	ci right 3.240543e-01	k: 112876	n:350000
KRT84   350000 perm   119 sec   (2929 perm/sec)   p_kst 3.225029e-01   p_cons 3.731429e-03   p_joint 1.429714e-02

Joint ci ratio: 5.488404e-02	ci left: 1.358859e-02	ci right 1.435815e-02	k: 5029	n:360000
Cons ci ratio: 1.065281e-01	ci left: 3.547544e-03	ci right 3.949398e-03	k: 1348	n:360000
KS ci ratio: 9.470650e-03	ci left: 3.209149e-01	ci right 3.239713e-01	k: 116079	n:360000
KRT84   360000 perm   124 sec   (2895 perm/sec)   p_kst 3.224417e-01   p_cons 3.744444e-03   p_joint 1.396944e-02

Joint ci ratio: 5.834907e-02	ci left: 1.169957e-02	ci right 1.240540e-02	k: 4458	n:370000
Cons ci ratio: 1.047935e-01	ci left: 3.570074e-03	ci right 3.967490e-03	k: 1393	n:370000
KS ci ratio: 9.344014e-03	ci left: 3.208319e-01	ci right 3.238465e-01	k: 119265	n:370000
KRT84   370000 perm   129 sec   (2859 perm/sec)   p_kst 3.223378e-01   p_cons 3.764865e-03   p_joint 1.204865e-02

Joint ci ratio: 6.103199e-02	ci left: 1.041158e-02	ci right 1.106960e-02	k: 4080	n:380000
Cons ci ratio: 1.033937e-01	ci left: 3.573521e-03	ci right 3.965684e-03	k: 1431	n:380000
KS ci ratio: 9.217881e-03	ci left: 3.209639e-01	ci right 3.239388e-01	k: 122531	n:380000
KRT84   380000 perm   134 sec   (2826 perm/sec)   p_kst 3.224500e-01   p_cons 3.765789e-03   p_joint 1.073684e-02

Joint ci ratio: 7.560285e-02	ci left: 6.587235e-03	ci right 7.107312e-03	k: 2669	n:390000
Cons ci ratio: 1.018748e-01	ci left: 3.589320e-03	ci right 3.977084e-03	k: 1474	n:390000
KS ci ratio: 9.094481e-03	ci left: 3.211969e-01	ci right 3.241339e-01	k: 125839	n:390000
KRT84   390000 perm   140 sec   (2792 perm/sec)   p_kst 3.226641e-01   p_cons 3.779487e-03   p_joint 6.843590e-03

Joint ci ratio: 7.468564e-02	ci left: 6.584453e-03	ci right 7.097730e-03	k: 2735	n:400000
Cons ci ratio: 1.007210e-01	ci left: 3.582433e-03	ci right 3.964811e-03	k: 1508	n:400000
KS ci ratio: 8.978625e-03	ci left: 3.212862e-01	ci right 3.241864e-01	k: 129094	n:400000
KRT84   400000 perm   145 sec   (2758 perm/sec)   p_kst 3.227350e-01   p_cons 3.770000e-03   p_joint 6.837500e-03

Joint ci ratio: 7.540266e-02	ci left: 6.301766e-03	ci right 6.797929e-03	k: 2684	n:410000
Cons ci ratio: 9.931530e-02	ci left: 3.597313e-03	ci right 3.975607e-03	k: 1551	n:410000
KS ci ratio: 8.869066e-03	ci left: 3.212739e-01	ci right 3.241384e-01	k: 132309	n:410000
KRT84   410000 perm   150 sec   (2725 perm/sec)   p_kst 3.227049e-01   p_cons 3.782927e-03   p_joint 6.546341e-03

Outputting figure to mutsig2_images.part000000000093/KRT84.3_1839_410000_0.3227_0.0037829_0.0065463.png
                gene_name: KRT84
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.0065 
     ci_joint_bounds_left: 0.0063 
    ci_joint_bounds_right: 0.0068 

Current progress: 74 percent done.
KRTAP1-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
KRTAP1-1   10000 perm   1 sec   (6692 perm/sec)   p_kst 6.319000e-01   p_cons 8.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRTAP1-1.3_538_10000_0.6319_0.8432_1.png
                gene_name: KRTAP1-1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
KRTAP10-12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
KS ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
KRTAP10-12   10000 perm   2 sec   (6532 perm/sec)   p_kst 4.242000e-01   p_cons 9.094000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRTAP10-12.3_742_10000_0.4242_0.9094_1.png
                gene_name: KRTAP10-12
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
KRTAP10-7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
Cons ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
KS ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
KRTAP10-7   10000 perm   2 sec   (6317 perm/sec)   p_kst 1.310000e-01   p_cons 3.647000e-01   p_joint 1.517000e-01

Joint ci ratio: 5.377752e-02	ci left: 2.042241e-01	ci right 2.155604e-01	k: 4197	n:20000
Cons ci ratio: 3.635641e-02	ci left: 3.608627e-01	ci right 3.742758e-01	k: 7351	n:20000
KS ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
KRTAP10-7   20000 perm   4 sec   (5587 perm/sec)   p_kst 1.328000e-01   p_cons 3.675500e-01   p_joint 2.098500e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-7.3_1121_20000_0.1328_0.36755_0.20985.png
                gene_name: KRTAP10-7
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 78 percent done.
KPNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
Cons ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
KPNA1   10000 perm   2 sec   (6464 perm/sec)   p_kst 7.384000e-01   p_cons 6.703000e-01   p_joint 8.949000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA1.2_1669_10000_0.7384_0.6703_0.8949.png
                gene_name: KPNA1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 80 percent done.
KPNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
KS ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
KPNA3   10000 perm   2 sec   (6455 perm/sec)   p_kst 7.417000e-01   p_cons 5.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNA3.2_1634_10000_0.7417_0.5574_1.png
                gene_name: KPNA3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
KPNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
Cons ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
KS ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
KPNA5   10000 perm   2 sec   (6399 perm/sec)   p_kst 5.135000e-01   p_cons 1.838000e-01   p_joint 5.135000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA5.2_1676_10000_0.5135_0.1838_0.5135.png
                gene_name: KPNA5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 82 percent done.
KRBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.904794e-02	ci left: 2.967772e-01	ci right 3.149361e-01	k: 3058	n:10000
Cons ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
KS ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
KRBA2   10000 perm   1 sec   (6845 perm/sec)   p_kst 1.486000e-01   p_cons 7.603000e-01   p_joint 3.058000e-01

Outputting figure to mutsig2_images.part000000000093/KRBA2.2_1487_10000_0.1486_0.7603_0.3058.png
                gene_name: KRBA2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 84 percent done.
KRT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
KRT10   10000 perm   2 sec   (6370 perm/sec)   p_kst 7.030000e-01   p_cons 9.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT10.2_1787_10000_0.703_0.9625_1.png
                gene_name: KRT10
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
KRT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
KS ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
KRT12   10000 perm   2 sec   (6409 perm/sec)   p_kst 1.216000e-01   p_cons 2.973000e-01   p_joint 5.213000e-01

Joint ci ratio: 5.211589e-02	ci left: 2.147207e-01	ci right 2.262607e-01	k: 4409	n:20000
Cons ci ratio: 4.239115e-02	ci left: 2.931068e-01	ci right 3.058515e-01	k: 5989	n:20000
KS ci ratio: 7.446280e-02	ci left: 1.171500e-01	ci right 1.262603e-01	k: 2433	n:20000
KRT12   20000 perm   4 sec   (5615 perm/sec)   p_kst 1.216500e-01   p_cons 2.994500e-01   p_joint 2.204500e-01

Outputting figure to mutsig2_images.part000000000093/KRT12.2_1517_20000_0.12165_0.29945_0.22045.png
                gene_name: KRT12
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
KRT17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KRT17   10000 perm   1 sec   (6992 perm/sec)   p_kst 1.700000e-03   p_cons 2.876000e-01   p_joint 2.700000e-03

Joint ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
Cons ci ratio: 4.353479e-02	ci left: 2.821277e-01	ci right 2.947338e-01	k: 5768	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
KRT17   20000 perm   3 sec   (6037 perm/sec)   p_kst 1.850000e-03   p_cons 2.884000e-01   p_joint 6.650000e-03

Joint ci ratio: 3.800645e-01	ci left: 2.863519e-03	ci right 4.235401e-03	k: 105	n:30000
Cons ci ratio: 3.550714e-02	ci left: 2.837419e-01	ci right 2.940324e-01	k: 8666	n:30000
KS ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
KRT17   30000 perm   5 sec   (5707 perm/sec)   p_kst 1.933333e-03   p_cons 2.888667e-01   p_joint 3.500000e-03

Joint ci ratio: 2.629550e-01	ci left: 4.798815e-03	ci right 6.274366e-03	k: 220	n:40000
Cons ci ratio: 3.079507e-02	ci left: 2.838391e-01	ci right 2.927417e-01	k: 11531	n:40000
KS ci ratio: 4.272524e-01	ci left: 1.653054e-03	ci right 2.571635e-03	k: 83	n:40000
KRT17   40000 perm   7 sec   (5496 perm/sec)   p_kst 2.075000e-03   p_cons 2.882750e-01   p_joint 5.500000e-03

Joint ci ratio: 1.508804e-01	ci left: 1.231422e-02	ci right 1.434286e-02	k: 665	n:50000
Cons ci ratio: 2.748501e-02	ci left: 2.851884e-01	ci right 2.931561e-01	k: 14458	n:50000
KS ci ratio: 3.785512e-01	ci left: 1.735999e-03	ci right 2.563509e-03	k: 106	n:50000
KRT17   50000 perm   9 sec   (5315 perm/sec)   p_kst 2.120000e-03   p_cons 2.891600e-01   p_joint 1.330000e-02

Joint ci ratio: 1.463451e-01	ci left: 1.095130e-02	ci right 1.269640e-02	k: 708	n:60000
Cons ci ratio: 2.517783e-02	ci left: 2.841130e-01	ci right 2.913742e-01	k: 17264	n:60000
KS ci ratio: 3.488516e-01	ci left: 1.734437e-03	ci right 2.481702e-03	k: 125	n:60000
KRT17   60000 perm   12 sec   (5139 perm/sec)   p_kst 2.083333e-03   p_cons 2.877333e-01   p_joint 1.180000e-02

Joint ci ratio: 1.085170e-01	ci left: 1.730604e-02	ci right 1.930560e-02	k: 1280	n:70000
Cons ci ratio: 2.331218e-02	ci left: 2.843482e-01	ci right 2.910694e-01	k: 20139	n:70000
KS ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
KRT17   70000 perm   14 sec   (5013 perm/sec)   p_kst 2.200000e-03   p_cons 2.877000e-01   p_joint 1.828571e-02

Joint ci ratio: 1.005679e-01	ci left: 1.769939e-02	ci right 1.958575e-02	k: 1490	n:80000
Cons ci ratio: 2.179933e-02	ci left: 2.847016e-01	ci right 2.909888e-01	k: 23027	n:80000
KS ci ratio: 2.968492e-01	ci left: 1.852532e-03	ci right 2.509407e-03	k: 173	n:80000
KRT17   80000 perm   16 sec   (4895 perm/sec)   p_kst 2.162500e-03   p_cons 2.878375e-01   p_joint 1.862500e-02

Joint ci ratio: 7.988761e-02	ci left: 2.501366e-02	ci right 2.710593e-02	k: 2344	n:90000
Cons ci ratio: 2.056850e-02	ci left: 2.845666e-01	ci right 2.904916e-01	k: 25877	n:90000
KS ci ratio: 2.796934e-01	ci left: 1.873483e-03	ci right 2.492638e-03	k: 195	n:90000
KRT17   90000 perm   19 sec   (4786 perm/sec)   p_kst 2.166667e-03   p_cons 2.875222e-01   p_joint 2.604444e-02

Joint ci ratio: 1.089928e-01	ci left: 1.207352e-02	ci right 1.347495e-02	k: 1276	n:100000
Cons ci ratio: 1.956280e-02	ci left: 2.836790e-01	ci right 2.892934e-01	k: 28648	n:100000
KS ci ratio: 2.676775e-01	ci left: 1.853786e-03	ci right 2.435696e-03	k: 213	n:100000
KRT17   100000 perm   21 sec   (4681 perm/sec)   p_kst 2.130000e-03   p_cons 2.864800e-01   p_joint 1.276000e-02

Joint ci ratio: 9.336457e-02	ci left: 1.503579e-02	ci right 1.651717e-02	k: 1734	n:110000
Cons ci ratio: 1.865982e-02	ci left: 2.836480e-01	ci right 2.889997e-01	k: 31495	n:110000
KS ci ratio: 2.538197e-01	ci left: 1.889195e-03	ci right 2.446665e-03	k: 237	n:110000
KRT17   110000 perm   24 sec   (4584 perm/sec)   p_kst 2.154545e-03   p_cons 2.863182e-01   p_joint 1.576364e-02

Joint ci ratio: 9.420120e-02	ci left: 1.355446e-02	ci right 1.490250e-02	k: 1706	n:120000
Cons ci ratio: 1.711627e-02	ci left: 3.015394e-01	ci right 3.067534e-01	k: 36497	n:120000
KS ci ratio: 2.442599e-01	ci left: 1.880215e-03	ci right 2.410971e-03	k: 256	n:120000
KRT17   120000 perm   27 sec   (4491 perm/sec)   p_kst 2.133333e-03   p_cons 3.041417e-01   p_joint 1.421667e-02

Joint ci ratio: 9.430950e-02	ci left: 1.249646e-02	ci right 1.374078e-02	k: 1704	n:130000
Cons ci ratio: 1.646048e-02	ci left: 3.012392e-01	ci right 3.062465e-01	k: 39486	n:130000
KS ci ratio: 2.315385e-01	ci left: 1.945380e-03	ci right 2.461843e-03	k: 285	n:130000
KRT17   130000 perm   30 sec   (4403 perm/sec)   p_kst 2.192308e-03   p_cons 3.037385e-01   p_joint 1.310769e-02

Joint ci ratio: 1.058960e-01	ci left: 9.179295e-03	ci right 1.021259e-02	k: 1356	n:140000
Cons ci ratio: 1.585140e-02	ci left: 3.016053e-01	ci right 3.064314e-01	k: 42562	n:140000
KS ci ratio: 2.242131e-01	ci left: 1.934392e-03	ci right 2.429446e-03	k: 304	n:140000
KRT17   140000 perm   32 sec   (4320 perm/sec)   p_kst 2.171429e-03   p_cons 3.040143e-01   p_joint 9.685714e-03

Joint ci ratio: 1.024095e-01	ci left: 9.177685e-03	ci right 1.017474e-02	k: 1450	n:150000
Cons ci ratio: 1.531420e-02	ci left: 3.016793e-01	ci right 3.063416e-01	k: 45601	n:150000
KS ci ratio: 2.175417e-01	ci left: 1.925091e-03	ci right 2.401147e-03	k: 323	n:150000
KRT17   150000 perm   35 sec   (4237 perm/sec)   p_kst 2.153333e-03   p_cons 3.040067e-01   p_joint 9.666667e-03

Joint ci ratio: 1.084045e-01	ci left: 7.666604e-03	ci right 8.551359e-03	k: 1296	n:160000
Cons ci ratio: 1.482400e-02	ci left: 3.018651e-01	ci right 3.063795e-01	k: 48659	n:160000
KS ci ratio: 2.114325e-01	ci left: 1.917144e-03	ci right 2.376195e-03	k: 342	n:160000
KRT17   160000 perm   38 sec   (4161 perm/sec)   p_kst 2.137500e-03   p_cons 3.041187e-01   p_joint 8.100000e-03

Joint ci ratio: 9.180153e-02	ci left: 1.012435e-02	ci right 1.110421e-02	k: 1803	n:170000
Cons ci ratio: 1.438204e-02	ci left: 3.019136e-01	ci right 3.062930e-01	k: 51697	n:170000
KS ci ratio: 2.063827e-01	ci left: 1.899138e-03	ci right 2.341646e-03	k: 359	n:170000
KRT17   170000 perm   42 sec   (4091 perm/sec)   p_kst 2.111765e-03   p_cons 3.041000e-01   p_joint 1.060588e-02

Joint ci ratio: 1.040215e-01	ci left: 7.420408e-03	ci right 8.240007e-03	k: 1408	n:180000
Cons ci ratio: 1.396988e-02	ci left: 3.021859e-01	ci right 3.064426e-01	k: 54776	n:180000
KS ci ratio: 2.000889e-01	ci left: 1.914908e-03	ci right 2.345823e-03	k: 382	n:180000
KRT17   180000 perm   45 sec   (4020 perm/sec)   p_kst 2.122222e-03   p_cons 3.043111e-01   p_joint 7.822222e-03

Joint ci ratio: 1.012223e-01	ci left: 7.434981e-03	ci right 8.232777e-03	k: 1487	n:190000
Cons ci ratio: 1.359815e-02	ci left: 3.022157e-01	ci right 3.063587e-01	k: 57814	n:190000
KS ci ratio: 1.943379e-01	ci left: 1.929201e-03	ci right 2.349379e-03	k: 405	n:190000
KRT17   190000 perm   48 sec   (3951 perm/sec)   p_kst 2.131579e-03   p_cons 3.042842e-01   p_joint 7.826316e-03

Joint ci ratio: 7.319020e-02	ci left: 1.362219e-02	ci right 1.466196e-02	k: 2827	n:200000
Cons ci ratio: 1.326134e-02	ci left: 3.020293e-01	ci right 3.060663e-01	k: 60809	n:200000
KS ci ratio: 1.894990e-01	ci left: 1.932697e-03	ci right 2.341948e-03	k: 426	n:200000
KRT17   200000 perm   51 sec   (3886 perm/sec)   p_kst 2.130000e-03   p_cons 3.040450e-01   p_joint 1.413500e-02

Joint ci ratio: 8.900447e-02	ci left: 8.744835e-03	ci right 9.564038e-03	k: 1921	n:210000
Cons ci ratio: 1.293629e-02	ci left: 3.022564e-01	ci right 3.061966e-01	k: 63887	n:210000
KS ci ratio: 1.858378e-01	ci left: 1.917811e-03	ci right 2.315180e-03	k: 443	n:210000
KRT17   210000 perm   55 sec   (3819 perm/sec)   p_kst 2.109524e-03   p_cons 3.042238e-01   p_joint 9.147619e-03

Joint ci ratio: 7.581906e-02	ci left: 1.154917e-02	ci right 1.246375e-02	k: 2640	n:220000
Cons ci ratio: 1.263578e-02	ci left: 3.024049e-01	ci right 3.062548e-01	k: 66952	n:220000
KS ci ratio: 1.810088e-01	ci left: 1.934722e-03	ci right 2.324036e-03	k: 467	n:220000
KRT17   220000 perm   59 sec   (3758 perm/sec)   p_kst 2.122727e-03   p_cons 3.043273e-01   p_joint 1.200000e-02

Joint ci ratio: 7.409882e-02	ci left: 1.157606e-02	ci right 1.247108e-02	k: 2764	n:230000
Cons ci ratio: 1.234856e-02	ci left: 3.027715e-01	ci right 3.065378e-01	k: 70070	n:230000
KS ci ratio: 1.774436e-01	ci left: 1.929506e-03	ci right 2.309303e-03	k: 486	n:230000
KRT17   230000 perm   62 sec   (3696 perm/sec)   p_kst 2.113043e-03   p_cons 3.046522e-01   p_joint 1.201739e-02

Joint ci ratio: 6.275880e-02	ci left: 1.549357e-02	ci right 1.650150e-02	k: 3838	n:240000
Cons ci ratio: 1.208150e-02	ci left: 3.030585e-01	ci right 3.067462e-01	k: 73176	n:240000
KS ci ratio: 1.739090e-01	ci left: 1.928779e-03	ci right 2.300076e-03	k: 506	n:240000
KRT17   240000 perm   66 sec   (3637 perm/sec)   p_kst 2.108333e-03   p_cons 3.049000e-01   p_joint 1.599167e-02

Joint ci ratio: 6.224616e-02	ci left: 1.512967e-02	ci right 1.610560e-02	k: 3903	n:250000
Cons ci ratio: 1.183752e-02	ci left: 3.030917e-01	ci right 3.067048e-01	k: 76224	n:250000
KS ci ratio: 1.694534e-01	ci left: 1.954990e-03	ci right 2.320706e-03	k: 533	n:250000
KRT17   250000 perm   70 sec   (3582 perm/sec)   p_kst 2.132000e-03   p_cons 3.048960e-01   p_joint 1.561200e-02

Joint ci ratio: 6.935293e-02	ci left: 1.171729e-02	ci right 1.256287e-02	k: 3155	n:260000
Cons ci ratio: 1.160744e-02	ci left: 3.031345e-01	ci right 3.066775e-01	k: 79275	n:260000
KS ci ratio: 1.653236e-01	ci left: 1.979296e-03	ci right 2.339638e-03	k: 560	n:260000
KRT17   260000 perm   74 sec   (3527 perm/sec)   p_kst 2.153846e-03   p_cons 3.049038e-01   p_joint 1.213462e-02

Joint ci ratio: 6.810263e-02	ci left: 1.170920e-02	ci right 1.253836e-02	k: 3272	n:270000
Cons ci ratio: 1.138808e-02	ci left: 3.032562e-01	ci right 3.067332e-01	k: 82348	n:270000
KS ci ratio: 1.623137e-01	ci left: 1.980578e-03	ci right 2.333948e-03	k: 581	n:270000
KRT17   270000 perm   78 sec   (3474 perm/sec)   p_kst 2.151852e-03   p_cons 3.049926e-01   p_joint 1.211852e-02

Joint ci ratio: 5.827440e-02	ci left: 1.543990e-02	ci right 1.637016e-02	k: 4452	n:280000
Cons ci ratio: 1.118409e-02	ci left: 3.032414e-01	ci right 3.066555e-01	k: 85385	n:280000
KS ci ratio: 1.589351e-01	ci left: 1.995542e-03	ci right 2.343463e-03	k: 606	n:280000
KRT17   280000 perm   82 sec   (3424 perm/sec)   p_kst 2.164286e-03   p_cons 3.049464e-01   p_joint 1.590000e-02

Joint ci ratio: 6.084595e-02	ci left: 1.368081e-02	ci right 1.454273e-02	k: 4091	n:290000
Cons ci ratio: 1.098863e-02	ci left: 3.033073e-01	ci right 3.066621e-01	k: 88445	n:290000
KS ci ratio: 1.565052e-01	ci left: 1.989661e-03	ci right 2.330755e-03	k: 625	n:290000
KRT17   290000 perm   86 sec   (3374 perm/sec)   p_kst 2.155172e-03   p_cons 3.049828e-01   p_joint 1.410690e-02

Joint ci ratio: 6.459585e-02	ci left: 1.173478e-02	ci right 1.252136e-02	k: 3637	n:300000
Cons ci ratio: 1.080826e-02	ci left: 3.031663e-01	ci right 3.064641e-01	k: 91444	n:300000
KS ci ratio: 1.545442e-01	ci left: 1.974595e-03	ci right 2.308472e-03	k: 641	n:300000
KRT17   300000 perm   90 sec   (3328 perm/sec)   p_kst 2.136667e-03   p_cons 3.048133e-01   p_joint 1.212333e-02

Joint ci ratio: 6.344530e-02	ci left: 1.177841e-02	ci right 1.255333e-02	k: 3770	n:310000
Cons ci ratio: 1.063867e-02	ci left: 3.029479e-01	ci right 3.061913e-01	k: 94416	n:310000
KS ci ratio: 1.513921e-01	ci left: 1.994663e-03	ci right 2.324431e-03	k: 668	n:310000
KRT17   310000 perm   95 sec   (3280 perm/sec)   p_kst 2.154839e-03   p_cons 3.045677e-01   p_joint 1.216129e-02

Joint ci ratio: 6.252456e-02	ci left: 1.175482e-02	ci right 1.251656e-02	k: 3882	n:320000
Cons ci ratio: 1.046793e-02	ci left: 3.031023e-01	ci right 3.062950e-01	k: 97503	n:320000
KS ci ratio: 1.495056e-01	ci left: 1.983454e-03	ci right 2.306918e-03	k: 685	n:320000
KRT17   320000 perm   99 sec   (3235 perm/sec)   p_kst 2.140625e-03   p_cons 3.046969e-01   p_joint 1.213125e-02

Joint ci ratio: 6.148717e-02	ci left: 1.179241e-02	ci right 1.254346e-02	k: 4014	n:330000
Cons ci ratio: 1.030811e-02	ci left: 3.031268e-01	ci right 3.062706e-01	k: 100550	n:330000
KS ci ratio: 1.460318e-01	ci left: 2.019655e-03	ci right 2.340702e-03	k: 718	n:330000
KRT17   330000 perm   103 sec   (3192 perm/sec)   p_kst 2.175758e-03   p_cons 3.046970e-01   p_joint 1.216364e-02

Joint ci ratio: 6.049237e-02	ci left: 1.183080e-02	ci right 1.257167e-02	k: 4147	n:340000
Cons ci ratio: 1.015405e-02	ci left: 3.032059e-01	ci right 3.063033e-01	k: 103616	n:340000
KS ci ratio: 1.436534e-01	ci left: 2.028285e-03	ci right 2.345002e-03	k: 742	n:340000
KRT17   340000 perm   108 sec   (3148 perm/sec)   p_kst 2.182353e-03   p_cons 3.047529e-01   p_joint 1.219706e-02

Joint ci ratio: 5.957252e-02	ci left: 1.185582e-02	ci right 1.258658e-02	k: 4276	n:350000
Cons ci ratio: 1.000939e-02	ci left: 3.031668e-01	ci right 3.062193e-01	k: 106642	n:350000
KS ci ratio: 1.413876e-01	ci left: 2.036461e-03	ci right 2.349016e-03	k: 766	n:350000
KRT17   350000 perm   113 sec   (3108 perm/sec)   p_kst 2.188571e-03   p_cons 3.046914e-01   p_joint 1.221714e-02

Joint ci ratio: 5.870688e-02	ci left: 1.187405e-02	ci right 1.259494e-02	k: 4403	n:360000
Cons ci ratio: 9.865574e-03	ci left: 3.033520e-01	ci right 3.063623e-01	k: 109748	n:360000
KS ci ratio: 1.397580e-01	ci left: 2.028133e-03	ci right 2.335524e-03	k: 784	n:360000
KRT17   360000 perm   117 sec   (3067 perm/sec)   p_kst 2.177778e-03   p_cons 3.048556e-01   p_joint 1.223056e-02

Joint ci ratio: 5.782625e-02	ci left: 1.191269e-02	ci right 1.262471e-02	k: 4538	n:370000
Cons ci ratio: 9.731999e-03	ci left: 3.033439e-01	ci right 3.063132e-01	k: 112786	n:370000
KS ci ratio: 1.372445e-01	ci left: 2.048983e-03	ci right 2.353492e-03	k: 813	n:370000
KRT17   370000 perm   122 sec   (3026 perm/sec)   p_kst 2.197297e-03   p_cons 3.048270e-01   p_joint 1.226486e-02

Joint ci ratio: 5.708310e-02	ci left: 1.190785e-02	ci right 1.261014e-02	k: 4657	n:380000
Cons ci ratio: 9.603528e-03	ci left: 3.033445e-01	ci right 3.062743e-01	k: 115827	n:380000
KS ci ratio: 1.354266e-01	ci left: 2.050982e-03	ci right 2.351426e-03	k: 835	n:380000
KRT17   380000 perm   127 sec   (2987 perm/sec)   p_kst 2.197368e-03   p_cons 3.048079e-01   p_joint 1.225526e-02

Joint ci ratio: 5.630229e-02	ci left: 1.193114e-02	ci right 1.262486e-02	k: 4787	n:390000
Cons ci ratio: 9.475886e-03	ci left: 3.035296e-01	ci right 3.064220e-01	k: 118940	n:390000
KS ci ratio: 1.336791e-01	ci left: 2.052905e-03	ci right 2.349441e-03	k: 857	n:390000
KRT17   390000 perm   132 sec   (2949 perm/sec)   p_kst 2.197436e-03   p_cons 3.049744e-01   p_joint 1.227436e-02

Joint ci ratio: 5.573654e-02	ci left: 1.187442e-02	ci right 1.255768e-02	k: 4885	n:400000
Cons ci ratio: 9.356951e-03	ci left: 3.035359e-01	ci right 3.063919e-01	k: 121985	n:400000
KS ci ratio: 1.319225e-01	ci left: 2.057172e-03	ci right 2.350114e-03	k: 880	n:400000
KRT17   400000 perm   137 sec   (2914 perm/sec)   p_kst 2.200000e-03   p_cons 3.049625e-01   p_joint 1.221250e-02

Joint ci ratio: 5.500345e-02	ci left: 1.189989e-02	ci right 1.257532e-02	k: 5016	n:410000
Cons ci ratio: 9.242278e-03	ci left: 3.035470e-01	ci right 3.063679e-01	k: 125032	n:410000
KS ci ratio: 1.301612e-01	ci left: 2.063615e-03	ci right 2.353248e-03	k: 904	n:410000
KRT17   410000 perm   142 sec   (2878 perm/sec)   p_kst 2.204878e-03   p_cons 3.049561e-01   p_joint 1.223415e-02

Joint ci ratio: 5.431458e-02	ci left: 1.191716e-02	ci right 1.258483e-02	k: 5144	n:420000
Cons ci ratio: 9.132388e-03	ci left: 3.035269e-01	ci right 3.063139e-01	k: 128066	n:420000
KS ci ratio: 1.280548e-01	ci left: 2.083604e-03	ci right 2.370951e-03	k: 934	n:420000
KRT17   420000 perm   148 sec   (2845 perm/sec)   p_kst 2.223810e-03   p_cons 3.049190e-01   p_joint 1.224762e-02

Joint ci ratio: 5.366641e-02	ci left: 1.192679e-02	ci right 1.258678e-02	k: 5269	n:430000
Cons ci ratio: 9.029744e-03	ci left: 3.033476e-01	ci right 3.061015e-01	k: 131031	n:430000
KS ci ratio: 1.263760e-01	ci left: 2.091438e-03	ci right 2.375801e-03	k: 959	n:430000
KRT17   430000 perm   153 sec   (2811 perm/sec)   p_kst 2.230233e-03   p_cons 3.047233e-01   p_joint 1.225349e-02

Joint ci ratio: 4.680249e-02	ci left: 1.532576e-02	ci right 1.606246e-02	k: 6904	n:440000
Cons ci ratio: 8.929334e-03	ci left: 3.032312e-01	ci right 3.059532e-01	k: 134020	n:440000
KS ci ratio: 1.252725e-01	ci left: 2.081325e-03	ci right 2.361658e-03	k: 976	n:440000
KRT17   440000 perm   158 sec   (2777 perm/sec)   p_kst 2.218182e-03   p_cons 3.045909e-01   p_joint 1.569091e-02

Joint ci ratio: 4.623942e-02	ci left: 1.535638e-02	ci right 1.608543e-02	k: 7073	n:450000
Cons ci ratio: 8.829234e-03	ci left: 3.032621e-01	ci right 3.059537e-01	k: 137073	n:450000
KS ci ratio: 1.235759e-01	ci left: 2.093207e-03	ci right 2.371042e-03	k: 1003	n:450000
KRT17   450000 perm   164 sec   (2746 perm/sec)   p_kst 2.228889e-03   p_cons 3.046067e-01   p_joint 1.571778e-02

Joint ci ratio: 5.366237e-02	ci left: 1.115956e-02	ci right 1.177705e-02	k: 5274	n:460000
Cons ci ratio: 8.731710e-03	ci left: 3.033266e-01	ci right 3.059889e-01	k: 140142	n:460000
KS ci ratio: 1.219464e-01	ci left: 2.104596e-03	ci right 2.379994e-03	k: 1030	n:460000
KRT17   460000 perm   169 sec   (2716 perm/sec)   p_kst 2.239130e-03   p_cons 3.046565e-01   p_joint 1.146522e-02

Joint ci ratio: 6.097495e-02	ci left: 8.451138e-03	ci right 8.984732e-03	k: 4096	n:470000
Cons ci ratio: 8.637045e-03	ci left: 3.034034e-01	ci right 3.060373e-01	k: 143218	n:470000
KS ci ratio: 1.203228e-01	ci left: 2.117588e-03	ci right 2.390734e-03	k: 1058	n:470000
KRT17   470000 perm   175 sec   (2684 perm/sec)   p_kst 2.251064e-03   p_cons 3.047191e-01   p_joint 8.714894e-03

Joint ci ratio: 7.146496e-02	ci left: 6.006483e-03	ci right 6.453675e-03	k: 2989	n:480000
Cons ci ratio: 8.543292e-03	ci left: 3.035811e-01	ci right 3.061879e-01	k: 146344	n:480000
KS ci ratio: 1.192027e-01	ci left: 2.113890e-03	ci right 2.383842e-03	k: 1078	n:480000
KRT17   480000 perm   181 sec   (2654 perm/sec)   p_kst 2.245833e-03   p_cons 3.048833e-01   p_joint 6.227083e-03

Joint ci ratio: 6.793570e-02	ci left: 6.519629e-03	ci right 6.980110e-03	k: 3306	n:490000
Cons ci ratio: 8.459245e-03	ci left: 3.034155e-01	ci right 3.059950e-01	k: 149305	n:490000
KS ci ratio: 1.181134e-01	ci left: 2.110354e-03	ci right 2.377219e-03	k: 1098	n:490000
KRT17   490000 perm   187 sec   (2624 perm/sec)   p_kst 2.240816e-03   p_cons 3.047041e-01   p_joint 6.746939e-03

Joint ci ratio: 7.007298e-02	ci left: 6.001977e-03	ci right 6.439775e-03	k: 3109	n:500000
Cons ci ratio: 8.374188e-03	ci left: 3.034303e-01	ci right 3.059839e-01	k: 152353	n:500000
KS ci ratio: 1.167922e-01	ci left: 2.116678e-03	ci right 2.381143e-03	k: 1123	n:500000
KRT17   500000 perm   193 sec   (2596 perm/sec)   p_kst 2.246000e-03   p_cons 3.047060e-01   p_joint 6.218000e-03

Joint ci ratio: 6.947300e-02	ci left: 5.988324e-03	ci right 6.421236e-03	k: 3163	n:510000
Cons ci ratio: 8.291071e-03	ci left: 3.034741e-01	ci right 3.060026e-01	k: 155416	n:510000
KS ci ratio: 1.158686e-01	ci left: 2.109441e-03	ci right 2.370775e-03	k: 1141	n:510000
KRT17   510000 perm   199 sec   (2569 perm/sec)   p_kst 2.237255e-03   p_cons 3.047373e-01   p_joint 6.201961e-03

Joint ci ratio: 6.866309e-02	ci left: 6.014907e-03	ci right 6.444469e-03	k: 3238	n:520000
Cons ci ratio: 8.210343e-03	ci left: 3.035182e-01	ci right 3.060224e-01	k: 158480	n:520000
KS ci ratio: 1.146205e-01	ci left: 2.115566e-03	ci right 2.374645e-03	k: 1166	n:520000
KRT17   520000 perm   205 sec   (2541 perm/sec)   p_kst 2.242308e-03   p_cons 3.047692e-01   p_joint 6.226923e-03

Joint ci ratio: 6.799451e-02	ci left: 6.020110e-03	ci right 6.445692e-03	k: 3302	n:530000
Cons ci ratio: 8.131965e-03	ci left: 3.035590e-01	ci right 3.060394e-01	k: 161543	n:530000
KS ci ratio: 1.136031e-01	ci left: 2.114142e-03	ci right 2.370593e-03	k: 1187	n:530000
KRT17   530000 perm   211 sec   (2513 perm/sec)   p_kst 2.239623e-03   p_cons 3.047981e-01   p_joint 6.230189e-03

Joint ci ratio: 6.469136e-02	ci left: 6.535156e-03	ci right 6.973865e-03	k: 3646	n:540000
Cons ci ratio: 8.057936e-03	ci left: 3.034854e-01	ci right 3.059426e-01	k: 164545	n:540000
KS ci ratio: 1.128934e-01	ci left: 2.101981e-03	ci right 2.355259e-03	k: 1202	n:540000
KRT17   540000 perm   217 sec   (2485 perm/sec)   p_kst 2.225926e-03   p_cons 3.047130e-01   p_joint 6.751852e-03

Joint ci ratio: 6.410522e-02	ci left: 6.536191e-03	ci right 6.970847e-03	k: 3713	n:550000
Cons ci ratio: 7.984728e-03	ci left: 3.034764e-01	ci right 3.059111e-01	k: 167581	n:550000
KS ci ratio: 1.120127e-01	ci left: 2.097337e-03	ci right 2.347953e-03	k: 1221	n:550000
KRT17   550000 perm   224 sec   (2460 perm/sec)   p_kst 2.220000e-03   p_cons 3.046927e-01   p_joint 6.750909e-03

Joint ci ratio: 6.343347e-02	ci left: 6.558298e-03	ci right 6.989686e-03	k: 3792	n:560000
Cons ci ratio: 7.913247e-03	ci left: 3.034803e-01	ci right 3.058931e-01	k: 170624	n:560000
KS ci ratio: 1.108393e-01	ci left: 2.105019e-03	ci right 2.353747e-03	k: 1247	n:560000
KRT17   560000 perm   230 sec   (2435 perm/sec)   p_kst 2.226786e-03   p_cons 3.046857e-01   p_joint 6.771429e-03

Joint ci ratio: 6.286418e-02	ci left: 6.562382e-03	ci right 6.990023e-03	k: 3861	n:570000
Cons ci ratio: 7.843359e-03	ci left: 3.035000e-01	ci right 3.058915e-01	k: 173676	n:570000
KS ci ratio: 1.098751e-01	ci left: 2.105620e-03	ci right 2.352114e-03	k: 1269	n:570000
KRT17   570000 perm   236 sec   (2411 perm/sec)   p_kst 2.226316e-03   p_cons 3.046947e-01   p_joint 6.773684e-03

Joint ci ratio: 6.234989e-02	ci left: 6.557854e-03	ci right 6.981578e-03	k: 3925	n:580000
Cons ci ratio: 7.775069e-03	ci left: 3.035311e-01	ci right 3.059019e-01	k: 176735	n:580000
KS ci ratio: 1.087250e-01	ci left: 2.114596e-03	ci right 2.359384e-03	k: 1296	n:580000
KRT17   580000 perm   243 sec   (2387 perm/sec)   p_kst 2.234483e-03   p_cons 3.047155e-01   p_joint 6.767241e-03

Joint ci ratio: 6.185582e-02	ci left: 6.551825e-03	ci right 6.971684e-03	k: 3988	n:590000
Cons ci ratio: 7.707546e-03	ci left: 3.036154e-01	ci right 3.059662e-01	k: 179826	n:590000
KS ci ratio: 1.081437e-01	ci left: 2.101840e-03	ci right 2.343767e-03	k: 1310	n:590000
KRT17   590000 perm   250 sec   (2362 perm/sec)   p_kst 2.220339e-03   p_cons 3.047898e-01   p_joint 6.759322e-03

Joint ci ratio: 6.144205e-02	ci left: 6.531238e-03	ci right 6.946879e-03	k: 4042	n:600000
Cons ci ratio: 7.642442e-03	ci left: 3.036587e-01	ci right 3.059899e-01	k: 182894	n:600000
KS ci ratio: 1.076123e-01	ci left: 2.087891e-03	ci right 2.326957e-03	k: 1323	n:600000
KRT17   600000 perm   257 sec   (2338 perm/sec)   p_kst 2.205000e-03   p_cons 3.048233e-01   p_joint 6.736667e-03

Joint ci ratio: 6.100649e-02	ci left: 6.517794e-03	ci right 6.929535e-03	k: 4100	n:610000
Cons ci ratio: 7.579519e-03	ci left: 3.036695e-01	ci right 3.059815e-01	k: 185943	n:610000
KS ci ratio: 1.068487e-01	ci left: 2.083975e-03	ci right 2.320793e-03	k: 1342	n:610000
KRT17   610000 perm   263 sec   (2316 perm/sec)   p_kst 2.200000e-03   p_cons 3.048246e-01   p_joint 6.721311e-03

Joint ci ratio: 6.047038e-02	ci left: 6.528623e-03	ci right 6.937297e-03	k: 4173	n:620000
Cons ci ratio: 7.517208e-03	ci left: 3.037316e-01	ci right 3.060250e-01	k: 189024	n:620000
KS ci ratio: 1.061792e-01	ci left: 2.077051e-03	ci right 2.311510e-03	k: 1359	n:620000
KRT17   620000 perm   270 sec   (2294 perm/sec)   p_kst 2.191935e-03   p_cons 3.048774e-01   p_joint 6.730645e-03

Joint ci ratio: 5.987722e-02	ci left: 6.554760e-03	ci right 6.960906e-03	k: 4256	n:630000
Cons ci ratio: 7.455684e-03	ci left: 3.038331e-01	ci right 3.061084e-01	k: 192131	n:630000
KS ci ratio: 1.052544e-01	ci left: 2.081170e-03	ci right 2.313922e-03	k: 1383	n:630000
KRT17   630000 perm   277 sec   (2271 perm/sec)   p_kst 2.195238e-03   p_cons 3.049698e-01   p_joint 6.755556e-03

Joint ci ratio: 5.933560e-02	ci left: 6.572402e-03	ci right 6.975832e-03	k: 4334	n:640000
Cons ci ratio: 7.398563e-03	ci left: 3.037644e-01	ci right 3.060217e-01	k: 195131	n:640000
KS ci ratio: 1.043905e-01	ci left: 2.083647e-03	ci right 2.314646e-03	k: 1406	n:640000
KRT17   640000 perm   285 sec   (2249 perm/sec)   p_kst 2.196875e-03   p_cons 3.048922e-01   p_joint 6.771875e-03

Joint ci ratio: 5.884871e-02	ci left: 6.580422e-03	ci right 6.980916e-03	k: 4406	n:650000
Cons ci ratio: 7.338472e-03	ci left: 3.039438e-01	ci right 3.061840e-01	k: 198291	n:650000
KS ci ratio: 1.034750e-01	ci left: 2.089053e-03	ci right 2.318497e-03	k: 1431	n:650000
KRT17   650000 perm   292 sec   (2227 perm/sec)   p_kst 2.201538e-03   p_cons 3.050631e-01   p_joint 6.778462e-03

Joint ci ratio: 5.836049e-02	ci left: 6.591198e-03	ci right 6.988908e-03	k: 4480	n:660000
Cons ci ratio: 7.283645e-03	ci left: 3.038954e-01	ci right 3.061184e-01	k: 201304	n:660000
KS ci ratio: 1.027955e-01	ci left: 2.085446e-03	ci right 2.312898e-03	k: 1450	n:660000
KRT17   660000 perm   299 sec   (2206 perm/sec)   p_kst 2.196970e-03   p_cons 3.050061e-01   p_joint 6.787879e-03

Joint ci ratio: 5.783311e-02	ci left: 6.613434e-03	ci right 7.008759e-03	k: 4562	n:670000
Cons ci ratio: 7.229876e-03	ci left: 3.038574e-01	ci right 3.060637e-01	k: 204323	n:670000
KS ci ratio: 1.019556e-01	ci left: 2.089224e-03	ci right 2.315115e-03	k: 1474	n:670000
KRT17   670000 perm   307 sec   (2185 perm/sec)   p_kst 2.200000e-03   p_cons 3.049597e-01   p_joint 6.808955e-03

Joint ci ratio: 5.743193e-02	ci left: 6.608938e-03	ci right 7.001163e-03	k: 4626	n:680000
Cons ci ratio: 7.175065e-03	ci left: 3.039513e-01	ci right 3.061415e-01	k: 207431	n:680000
KS ci ratio: 1.011022e-01	ci left: 2.094331e-03	ci right 2.318767e-03	k: 1499	n:680000
KRT17   680000 perm   314 sec   (2164 perm/sec)   p_kst 2.204412e-03   p_cons 3.050456e-01   p_joint 6.802941e-03

Joint ci ratio: 5.712486e-02	ci left: 6.584580e-03	ci right 6.973201e-03	k: 4676	n:690000
Cons ci ratio: 7.122480e-03	ci left: 3.039833e-01	ci right 3.061575e-01	k: 210498	n:690000
KS ci ratio: 1.004350e-01	ci left: 2.092233e-03	ci right 2.314877e-03	k: 1519	n:690000
KRT17   690000 perm   322 sec   (2144 perm/sec)   p_kst 2.201449e-03   p_cons 3.050696e-01   p_joint 6.776812e-03

Joint ci ratio: 5.676828e-02	ci left: 6.573599e-03	ci right 6.959071e-03	k: 4735	n:700000
Cons ci ratio: 7.071129e-03	ci left: 3.040086e-01	ci right 3.061673e-01	k: 213561	n:700000
KS ci ratio: 9.961889e-02	ci left: 2.097166e-03	ci right 2.318415e-03	k: 1544	n:700000
KRT17   700000 perm   329 sec   (2125 perm/sec)   p_kst 2.205714e-03   p_cons 3.050871e-01   p_joint 6.764286e-03

Outputting figure to mutsig2_images.part000000000093/KRT17.2_1331_700000_0.0022057_0.30509_0.0067643.png
                gene_name: KRT17
               theta_stop: 0.100 
                    nperm: 700000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.0068 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0070 

Current progress: 88 percent done.
KRT20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
KRT20   10000 perm   1 sec   (6704 perm/sec)   p_kst 6.190000e-01   p_cons 1.246000e-01   p_joint 4.404000e-01

Joint ci ratio: 1.561273e-02	ci left: 7.531615e-01	ci right 7.650631e-01	k: 15183	n:20000
Cons ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
KS ci ratio: 2.187001e-02	ci left: 6.095190e-01	ci right 6.230471e-01	k: 12326	n:20000
KRT20   20000 perm   3 sec   (5844 perm/sec)   p_kst 6.163000e-01   p_cons 1.232500e-01   p_joint 7.591500e-01

Outputting figure to mutsig2_images.part000000000093/KRT20.2_1307_20000_0.6163_0.12325_0.75915.png
                gene_name: KRT20
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 89 percent done.
KRT23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
Cons ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
KS ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
KRT23   10000 perm   1 sec   (7063 perm/sec)   p_kst 8.915000e-01   p_cons 7.443000e-01   p_joint 9.081000e-01

Outputting figure to mutsig2_images.part000000000093/KRT23.2_1301_10000_0.8915_0.7443_0.9081.png
                gene_name: KRT23
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 91 percent done.
KRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
KRT3   10000 perm   2 sec   (6043 perm/sec)   p_kst 8.748000e-01   p_cons 8.750000e-02   p_joint 1.673000e-01

Joint ci ratio: 8.824551e-02	ci left: 8.582360e-02	ci right 9.379612e-02	k: 1795	n:20000
Cons ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
KS ci ratio: 1.033110e-02	ci left: 8.734349e-01	ci right 8.825549e-01	k: 17561	n:20000
KRT3   20000 perm   4 sec   (5322 perm/sec)   p_kst 8.780500e-01   p_cons 8.610000e-02   p_joint 8.975000e-02

Outputting figure to mutsig2_images.part000000000093/KRT3.2_1923_20000_0.87805_0.0861_0.08975.png
                gene_name: KRT3
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 92 percent done.
KRT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
Cons ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
KS ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
KRT4   10000 perm   2 sec   (6305 perm/sec)   p_kst 3.482000e-01   p_cons 5.072000e-01   p_joint 7.327000e-01

Outputting figure to mutsig2_images.part000000000093/KRT4.2_1821_10000_0.3482_0.5072_0.7327.png
                gene_name: KRT4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 93 percent done.
KRT6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.243911e-02	ci left: 2.182281e-01	ci right 2.347315e-01	k: 2264	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
KRT6C   10000 perm   2 sec   (6517 perm/sec)   p_kst 2.572000e-01   p_cons 1.586000e-01   p_joint 2.264000e-01

Outputting figure to mutsig2_images.part000000000093/KRT6C.2_1731_10000_0.2572_0.1586_0.2264.png
                gene_name: KRT6C
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 95 percent done.
KRT81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
Cons ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
KS ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KRT81   10000 perm   2 sec   (6451 perm/sec)   p_kst 7.396000e-01   p_cons 8.235000e-01   p_joint 9.315000e-01

Outputting figure to mutsig2_images.part000000000093/KRT81.2_1554_10000_0.7396_0.8235_0.9315.png
                gene_name: KRT81
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 96 percent done.
KRT83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
Cons ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
KS ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
KRT83   10000 perm   2 sec   (6582 perm/sec)   p_kst 4.050000e-01   p_cons 5.935000e-01   p_joint 5.454000e-01

Outputting figure to mutsig2_images.part000000000093/KRT83.2_1518_10000_0.405_0.5935_0.5454.png
                gene_name: KRT83
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 97 percent done.
KRT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 1.888152e-02	ci left: 8.038971e-01	ci right 8.193209e-01	k: 8117	n:10000
KS ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
KRT9   10000 perm   2 sec   (6511 perm/sec)   p_kst 2.200000e-03   p_cons 8.117000e-01   p_joint 7.000000e-02

Joint ci ratio: 1.173406e-01	ci left: 4.974084e-02	ci right 5.598996e-02	k: 1056	n:20000
Cons ci ratio: 1.327879e-02	ci left: 8.078797e-01	ci right 8.187291e-01	k: 16267	n:20000
KS ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
KRT9   20000 perm   4 sec   (5702 perm/sec)   p_kst 2.200000e-03   p_cons 8.133500e-01   p_joint 5.280000e-02

Joint ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
Cons ci ratio: 1.084496e-02	ci left: 8.088100e-01	ci right 8.176626e-01	k: 24398	n:30000
KS ci ratio: 4.933466e-01	ci left: 1.584857e-03	ci right 2.648601e-03	k: 62	n:30000
KRT9   30000 perm   6 sec   (5412 perm/sec)   p_kst 2.066667e-03   p_cons 8.132667e-01   p_joint 3.513333e-02

Joint ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
Cons ci ratio: 9.356910e-03	ci left: 8.105547e-01	ci right 8.181996e-01	k: 32576	n:40000
KS ci ratio: 4.272524e-01	ci left: 1.653054e-03	ci right 2.571635e-03	k: 83	n:40000
KRT9   40000 perm   8 sec   (5219 perm/sec)   p_kst 2.075000e-03   p_cons 8.144000e-01   p_joint 4.547500e-02

Joint ci ratio: 8.366265e-02	ci left: 4.029762e-02	ci right 4.383579e-02	k: 2102	n:50000
Cons ci ratio: 8.354653e-03	ci left: 8.114877e-01	ci right 8.183157e-01	k: 40746	n:50000
KS ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
KRT9   50000 perm   10 sec   (5060 perm/sec)   p_kst 1.940000e-03   p_cons 8.149200e-01   p_joint 4.204000e-02

Joint ci ratio: 7.972355e-02	ci left: 3.718704e-02	ci right 4.029112e-02	k: 2323	n:60000
Cons ci ratio: 7.617940e-03	ci left: 8.121379e-01	ci right 8.183649e-01	k: 48916	n:60000
KS ci ratio: 3.768594e-01	ci left: 1.461708e-03	ci right 2.154575e-03	k: 107	n:60000
KRT9   60000 perm   12 sec   (4918 perm/sec)   p_kst 1.783333e-03   p_cons 8.152667e-01   p_joint 3.871667e-02

Joint ci ratio: 7.387118e-02	ci left: 3.724107e-02	ci right 4.011162e-02	k: 2706	n:70000
Cons ci ratio: 7.057737e-03	ci left: 8.121608e-01	ci right 8.179273e-01	k: 57054	n:70000
KS ci ratio: 3.531413e-01	ci left: 1.447541e-03	ci right 2.080622e-03	k: 122	n:70000
KRT9   70000 perm   15 sec   (4796 perm/sec)   p_kst 1.742857e-03   p_cons 8.150571e-01   p_joint 3.865714e-02

Joint ci ratio: 6.942432e-02	ci left: 3.699290e-02	ci right 3.966572e-02	k: 3065	n:80000
Cons ci ratio: 6.588916e-03	ci left: 8.129453e-01	ci right 8.183318e-01	k: 65252	n:80000
KS ci ratio: 3.346192e-01	ci left: 1.426492e-03	ci right 2.010597e-03	k: 136	n:80000
KRT9   80000 perm   17 sec   (4682 perm/sec)   p_kst 1.700000e-03   p_cons 8.156500e-01   p_joint 3.831250e-02

Joint ci ratio: 6.563469e-02	ci left: 3.686958e-02	ci right 3.938252e-02	k: 3430	n:90000
Cons ci ratio: 6.236744e-03	ci left: 8.119002e-01	ci right 8.169907e-01	k: 73301	n:90000
KS ci ratio: 3.197981e-01	ci left: 1.400575e-03	ci right 1.943467e-03	k: 149	n:90000
KRT9   90000 perm   20 sec   (4577 perm/sec)   p_kst 1.655556e-03   p_cons 8.144556e-01   p_joint 3.811111e-02

Joint ci ratio: 6.673763e-02	ci left: 3.223588e-02	ci right 3.447130e-02	k: 3334	n:100000
Cons ci ratio: 6.292466e-03	ci left: 7.926049e-01	ci right 7.976180e-01	k: 79512	n:100000
KS ci ratio: 3.030838e-01	ci left: 1.417242e-03	ci right 1.932354e-03	k: 166	n:100000
KRT9   100000 perm   22 sec   (4481 perm/sec)   p_kst 1.660000e-03   p_cons 7.951200e-01   p_joint 3.334000e-02

Joint ci ratio: 6.546813e-02	ci left: 3.052932e-02	ci right 3.260457e-02	k: 3471	n:110000
Cons ci ratio: 5.978731e-03	ci left: 7.938620e-01	ci right 7.986315e-01	k: 87588	n:110000
KS ci ratio: 2.903279e-01	ci left: 1.414620e-03	ci right 1.903167e-03	k: 181	n:110000
KRT9   110000 perm   25 sec   (4393 perm/sec)   p_kst 1.645455e-03   p_cons 7.962545e-01   p_joint 3.155455e-02

Joint ci ratio: 6.341634e-02	ci left: 2.987886e-02	ci right 3.184389e-02	k: 3702	n:120000
Cons ci ratio: 5.734126e-03	ci left: 7.933991e-01	ci right 7.979699e-01	k: 95483	n:120000
KS ci ratio: 2.790579e-01	ci left: 1.412813e-03	ci right 1.878469e-03	k: 196	n:120000
KRT9   120000 perm   28 sec   (4312 perm/sec)   p_kst 1.633333e-03   p_cons 7.956917e-01   p_joint 3.085000e-02

Joint ci ratio: 6.886950e-02	ci left: 2.347732e-02	ci right 2.515938e-02	k: 3160	n:130000
Cons ci ratio: 5.511113e-03	ci left: 7.933743e-01	ci right 7.977664e-01	k: 103425	n:130000
KS ci ratio: 2.690061e-01	ci left: 1.411594e-03	ci right 1.857263e-03	k: 211	n:130000
KRT9   130000 perm   31 sec   (4235 perm/sec)   p_kst 1.623077e-03   p_cons 7.955769e-01   p_joint 2.430769e-02

Joint ci ratio: 6.669797e-02	ci left: 2.327486e-02	ci right 2.488779e-02	k: 3370	n:140000
Cons ci ratio: 5.315511e-03	ci left: 7.931553e-01	ci right 7.973896e-01	k: 111339	n:140000
KS ci ratio: 2.622925e-01	ci left: 1.384103e-03	ci right 1.808397e-03	k: 222	n:140000
KRT9   140000 perm   34 sec   (4157 perm/sec)   p_kst 1.585714e-03   p_cons 7.952786e-01   p_joint 2.407143e-02

Joint ci ratio: 6.426145e-02	ci left: 2.342821e-02	ci right 2.499025e-02	k: 3630	n:150000
Cons ci ratio: 5.136405e-03	ci left: 7.931554e-01	ci right 7.972465e-01	k: 119281	n:150000
KS ci ratio: 2.523056e-01	ci left: 1.404095e-03	ci right 1.815555e-03	k: 240	n:150000
KRT9   150000 perm   37 sec   (4081 perm/sec)   p_kst 1.600000e-03   p_cons 7.952067e-01   p_joint 2.420000e-02

Joint ci ratio: 6.190278e-02	ci left: 2.369260e-02	ci right 2.521220e-02	k: 3911	n:160000
Cons ci ratio: 4.972545e-03	ci left: 7.932706e-01	ci right 7.972312e-01	k: 127241	n:160000
KS ci ratio: 2.448032e-01	ci left: 1.404251e-03	ci right 1.801660e-03	k: 255	n:160000
KRT9   160000 perm   40 sec   (4007 perm/sec)   p_kst 1.593750e-03   p_cons 7.952562e-01   p_joint 2.444375e-02

Joint ci ratio: 6.202146e-02	ci left: 2.224627e-02	ci right 2.367594e-02	k: 3902	n:170000
Cons ci ratio: 4.829179e-03	ci left: 7.929845e-01	ci right 7.968290e-01	k: 135135	n:170000
KS ci ratio: 2.370579e-01	ci left: 1.415613e-03	ci right 1.801703e-03	k: 272	n:170000
KRT9   170000 perm   43 sec   (3938 perm/sec)   p_kst 1.600000e-03   p_cons 7.949118e-01   p_joint 2.295294e-02

Joint ci ratio: 5.991582e-02	ci left: 2.253137e-02	ci right 2.392849e-02	k: 4180	n:180000
Cons ci ratio: 4.689769e-03	ci left: 7.932724e-01	ci right 7.970069e-01	k: 143126	n:180000
KS ci ratio: 2.304024e-01	ci left: 1.420653e-03	ci right 1.795692e-03	k: 288	n:180000
KRT9   180000 perm   47 sec   (3871 perm/sec)   p_kst 1.600000e-03   p_cons 7.951444e-01   p_joint 2.322222e-02

Joint ci ratio: 5.783843e-02	ci left: 2.292208e-02	ci right 2.429250e-02	k: 4484	n:190000
Cons ci ratio: 4.560957e-03	ci left: 7.935895e-01	ci right 7.972225e-01	k: 151128	n:190000
KS ci ratio: 2.235448e-01	ci left: 1.435235e-03	ci right 1.801294e-03	k: 306	n:190000
KRT9   190000 perm   50 sec   (3805 perm/sec)   p_kst 1.610526e-03   p_cons 7.954105e-01   p_joint 2.360000e-02

Joint ci ratio: 5.684463e-02	ci left: 2.256439e-02	ci right 2.388948e-02	k: 4644	n:200000
Cons ci ratio: 4.448619e-03	ci left: 7.934045e-01	ci right 7.969469e-01	k: 159036	n:200000
KS ci ratio: 2.179379e-01	ci left: 1.439051e-03	ci right 1.795644e-03	k: 322	n:200000
KRT9   200000 perm   53 sec   (3743 perm/sec)   p_kst 1.610000e-03   p_cons 7.951800e-01   p_joint 2.322000e-02

Joint ci ratio: 5.623633e-02	ci left: 2.197794e-02	ci right 2.325433e-02	k: 4748	n:210000
Cons ci ratio: 4.338919e-03	ci left: 7.936347e-01	ci right 7.970904e-01	k: 167027	n:210000
KS ci ratio: 2.117961e-01	ci left: 1.456134e-03	ci right 1.805473e-03	k: 341	n:210000
KRT9   210000 perm   57 sec   (3684 perm/sec)   p_kst 1.623810e-03   p_cons 7.953667e-01   p_joint 2.260952e-02

Joint ci ratio: 5.574033e-02	ci left: 2.137316e-02	ci right 2.260312e-02	k: 4836	n:220000
Cons ci ratio: 4.240029e-03	ci left: 7.936078e-01	ci right 7.969844e-01	k: 174966	n:220000
KS ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
KRT9   220000 perm   61 sec   (3628 perm/sec)   p_kst 1.650000e-03   p_cons 7.953000e-01   p_joint 2.198182e-02

Joint ci ratio: 5.427888e-02	ci left: 2.157170e-02	ci right 2.277952e-02	k: 5099	n:230000
Cons ci ratio: 4.144670e-03	ci left: 7.938152e-01	ci right 7.971165e-01	k: 182958	n:230000
KS ci ratio: 2.025331e-01	ci left: 1.461430e-03	ci right 1.794810e-03	k: 373	n:230000
KRT9   230000 perm   64 sec   (3575 perm/sec)   p_kst 1.621739e-03   p_cons 7.954696e-01   p_joint 2.216957e-02

Joint ci ratio: 5.291650e-02	ci left: 2.176230e-02	ci right 2.294927e-02	k: 5364	n:240000
Cons ci ratio: 4.055102e-03	ci left: 7.940353e-01	ci right 7.972659e-01	k: 190957	n:240000
KS ci ratio: 1.980810e-01	ci left: 1.467819e-03	ci right 1.794406e-03	k: 390	n:240000
KRT9   240000 perm   68 sec   (3520 perm/sec)   p_kst 1.625000e-03   p_cons 7.956542e-01   p_joint 2.235000e-02

Joint ci ratio: 5.181202e-02	ci left: 2.180372e-02	ci right 2.296739e-02	k: 5595	n:250000
Cons ci ratio: 3.973834e-03	ci left: 7.940138e-01	ci right 7.971793e-01	k: 198900	n:250000
KS ci ratio: 1.931999e-01	ci left: 1.485189e-03	ci right 1.806542e-03	k: 410	n:250000
KRT9   250000 perm   72 sec   (3470 perm/sec)   p_kst 1.640000e-03   p_cons 7.956000e-01   p_joint 2.238000e-02

Joint ci ratio: 5.036432e-02	ci left: 2.219546e-02	ci right 2.334598e-02	k: 5919	n:260000
Cons ci ratio: 3.897033e-03	ci left: 7.940139e-01	ci right 7.971180e-01	k: 206848	n:260000
KS ci ratio: 1.895459e-01	ci left: 1.486657e-03	ci right 1.801543e-03	k: 426	n:260000
KRT9   260000 perm   76 sec   (3420 perm/sec)   p_kst 1.638462e-03   p_cons 7.955692e-01   p_joint 2.276538e-02

Joint ci ratio: 4.341093e-02	ci left: 2.867807e-02	ci right 2.995428e-02	k: 7914	n:270000
Cons ci ratio: 3.819076e-03	ci left: 7.944787e-01	ci right 7.975223e-01	k: 214921	n:270000
KS ci ratio: 1.860916e-01	ci left: 1.488069e-03	ci right 1.796861e-03	k: 442	n:270000
KRT9   270000 perm   80 sec   (3369 perm/sec)   p_kst 1.637037e-03   p_cons 7.960037e-01   p_joint 2.931111e-02

Joint ci ratio: 4.647848e-02	ci left: 2.419886e-02	ci right 2.535386e-02	k: 6936	n:280000
Cons ci ratio: 3.750961e-03	ci left: 7.944453e-01	ci right 7.974343e-01	k: 222864	n:280000
KS ci ratio: 1.838252e-01	ci left: 1.472389e-03	ci right 1.773792e-03	k: 453	n:280000
KRT9   280000 perm   84 sec   (3321 perm/sec)   p_kst 1.617857e-03   p_cons 7.959429e-01   p_joint 2.477143e-02

Joint ci ratio: 4.571497e-02	ci left: 2.416200e-02	ci right 2.529580e-02	k: 7170	n:290000
Cons ci ratio: 3.682804e-03	ci left: 7.947292e-01	ci right 7.976649e-01	k: 230898	n:290000
KS ci ratio: 1.812495e-01	ci left: 1.464396e-03	ci right 1.759501e-03	k: 466	n:290000
KRT9   290000 perm   89 sec   (3275 perm/sec)   p_kst 1.606897e-03   p_cons 7.962000e-01   p_joint 2.472414e-02

Joint ci ratio: 4.494746e-02	ci left: 2.417061e-02	ci right 2.528527e-02	k: 7417	n:300000
Cons ci ratio: 3.620717e-03	ci left: 7.947707e-01	ci right 7.976569e-01	k: 238865	n:300000
KS ci ratio: 1.778538e-01	ci left: 1.472886e-03	ci right 1.763544e-03	k: 484	n:300000
KRT9   300000 perm   93 sec   (3231 perm/sec)   p_kst 1.613333e-03   p_cons 7.962167e-01   p_joint 2.472333e-02

Joint ci ratio: 4.418780e-02	ci left: 2.421071e-02	ci right 2.530787e-02	k: 7674	n:310000
Cons ci ratio: 3.561385e-03	ci left: 7.948358e-01	ci right 7.976748e-01	k: 246840	n:310000
KS ci ratio: 1.756947e-01	ci left: 1.462370e-03	ci right 1.747077e-03	k: 496	n:310000
KRT9   310000 perm   97 sec   (3187 perm/sec)   p_kst 1.600000e-03   p_cons 7.962581e-01   p_joint 2.475484e-02

Joint ci ratio: 4.342612e-02	ci left: 2.429175e-02	ci right 2.537313e-02	k: 7945	n:320000
Cons ci ratio: 3.505418e-03	ci left: 7.948471e-01	ci right 7.976413e-01	k: 254799	n:320000
KS ci ratio: 1.725965e-01	ci left: 1.470470e-03	ci right 1.751180e-03	k: 514	n:320000
KRT9   320000 perm   102 sec   (3146 perm/sec)   p_kst 1.606250e-03   p_cons 7.962469e-01   p_joint 2.482812e-02

Joint ci ratio: 4.358076e-02	ci left: 2.340853e-02	ci right 2.445440e-02	k: 7896	n:330000
Cons ci ratio: 3.451654e-03	ci left: 7.948914e-01	ci right 7.976428e-01	k: 262769	n:330000
KS ci ratio: 1.707836e-01	ci left: 1.457810e-03	ci right 1.732879e-03	k: 525	n:330000
KRT9   330000 perm   106 sec   (3103 perm/sec)   p_kst 1.590909e-03   p_cons 7.962697e-01   p_joint 2.392727e-02

Joint ci ratio: 4.299007e-02	ci left: 2.335718e-02	ci right 2.438625e-02	k: 8115	n:340000
Cons ci ratio: 3.401708e-03	ci left: 7.947978e-01	ci right 7.975089e-01	k: 270693	n:340000
KS ci ratio: 1.691844e-01	ci left: 1.443093e-03	ci right 1.712575e-03	k: 535	n:340000
KRT9   340000 perm   111 sec   (3063 perm/sec)   p_kst 1.573529e-03   p_cons 7.961559e-01   p_joint 2.386765e-02

Joint ci ratio: 3.730866e-02	ci left: 3.000639e-02	ci right 3.114998e-02	k: 10701	n:350000
Cons ci ratio: 3.351330e-03	ci left: 7.949561e-01	ci right 7.976276e-01	k: 278703	n:350000
KS ci ratio: 1.670177e-01	ci left: 1.440179e-03	ci right 1.705326e-03	k: 549	n:350000
KRT9   350000 perm   116 sec   (3024 perm/sec)   p_kst 1.568571e-03   p_cons 7.962943e-01   p_joint 3.057429e-02

Joint ci ratio: 3.757359e-02	ci left: 2.879554e-02	ci right 2.990094e-02	k: 10564	n:360000
Cons ci ratio: 3.305332e-03	ci left: 7.948887e-01	ci right 7.975232e-01	k: 286635	n:360000
KS ci ratio: 1.647859e-01	ci left: 1.440111e-03	ci right 1.701351e-03	k: 564	n:360000
KRT9   360000 perm   121 sec   (2987 perm/sec)   p_kst 1.566667e-03   p_cons 7.962083e-01   p_joint 2.934444e-02

Joint ci ratio: 4.126816e-02	ci left: 2.331392e-02	ci right 2.429897e-02	k: 8807	n:370000
Cons ci ratio: 3.260633e-03	ci left: 7.948794e-01	ci right 7.974781e-01	k: 294587	n:370000
KS ci ratio: 1.623612e-01	ci left: 1.445254e-03	ci right 1.703193e-03	k: 581	n:370000
KRT9   370000 perm   126 sec   (2948 perm/sec)   p_kst 1.570270e-03   p_cons 7.961811e-01   p_joint 2.380270e-02

Joint ci ratio: 4.073550e-02	ci left: 2.330466e-02	ci right 2.427631e-02	k: 9039	n:380000
Cons ci ratio: 3.216056e-03	ci left: 7.950370e-01	ci right 7.976006e-01	k: 302602	n:380000
KS ci ratio: 1.607136e-01	ci left: 1.437523e-03	ci right 1.691227e-03	k: 593	n:380000
KRT9   380000 perm   131 sec   (2911 perm/sec)   p_kst 1.560526e-03   p_cons 7.963211e-01   p_joint 2.378684e-02

Joint ci ratio: 4.020741e-02	ci left: 2.331372e-02	ci right 2.427286e-02	k: 9278	n:390000
Cons ci ratio: 3.175390e-03	ci left: 7.949683e-01	ci right 7.974991e-01	k: 310532	n:390000
KS ci ratio: 1.588528e-01	ci left: 1.435125e-03	ci right 1.685194e-03	k: 607	n:390000
KRT9   390000 perm   136 sec   (2874 perm/sec)   p_kst 1.556410e-03   p_cons 7.962359e-01   p_joint 2.378974e-02

Joint ci ratio: 3.670238e-02	ci left: 2.721837e-02	ci right 2.823849e-02	k: 11090	n:400000
Cons ci ratio: 3.135020e-03	ci left: 7.950285e-01	ci right 7.975273e-01	k: 318512	n:400000
KS ci ratio: 1.565519e-01	ci left: 1.442472e-03	ci right 1.689838e-03	k: 625	n:400000
KRT9   400000 perm   141 sec   (2839 perm/sec)   p_kst 1.562500e-03   p_cons 7.962800e-01   p_joint 2.772500e-02

Joint ci ratio: 3.961961e-02	ci left: 2.285730e-02	ci right 2.378360e-02	k: 9560	n:410000
Cons ci ratio: 3.096524e-03	ci left: 7.950468e-01	ci right 7.975149e-01	k: 326476	n:410000
KS ci ratio: 1.551952e-01	ci left: 1.433072e-03	ci right 1.676498e-03	k: 636	n:410000
KRT9   410000 perm   146 sec   (2803 perm/sec)   p_kst 1.551220e-03   p_cons 7.962829e-01   p_joint 2.331707e-02

Joint ci ratio: 3.917828e-02	ci left: 2.282465e-02	ci right 2.373909e-02	k: 9777	n:420000
Cons ci ratio: 3.058941e-03	ci left: 7.951145e-01	ci right 7.975528e-01	k: 334461	n:420000
KS ci ratio: 1.536358e-01	ci left: 1.428707e-03	ci right 1.668730e-03	k: 649	n:420000
KRT9   420000 perm   152 sec   (2769 perm/sec)   p_kst 1.545238e-03   p_cons 7.963357e-01   p_joint 2.327857e-02

Joint ci ratio: 3.883101e-02	ci left: 2.270143e-02	ci right 2.360269e-02	k: 9954	n:430000
Cons ci ratio: 3.023842e-03	ci left: 7.950558e-01	ci right 7.974658e-01	k: 342393	n:430000
KS ci ratio: 1.515513e-01	ci left: 1.435744e-03	ci right 1.673379e-03	k: 667	n:430000
KRT9   430000 perm   157 sec   (2737 perm/sec)   p_kst 1.551163e-03   p_cons 7.962628e-01   p_joint 2.314884e-02

Joint ci ratio: 3.794438e-02	ci left: 2.323228e-02	ci right 2.413310e-02	k: 10419	n:440000
Cons ci ratio: 2.988521e-03	ci left: 7.951524e-01	ci right 7.975346e-01	k: 350392	n:440000
KS ci ratio: 1.498780e-01	ci left: 1.435919e-03	ci right 1.670723e-03	k: 682	n:440000
KRT9   440000 perm   163 sec   (2706 perm/sec)   p_kst 1.550000e-03   p_cons 7.963455e-01   p_joint 2.367955e-02

Joint ci ratio: 3.752549e-02	ci left: 2.323110e-02	ci right 2.412171e-02	k: 10653	n:450000
Cons ci ratio: 2.955442e-03	ci left: 7.951314e-01	ci right 7.974870e-01	k: 358340	n:450000
KS ci ratio: 1.483654e-01	ci left: 1.433960e-03	ci right 1.665867e-03	k: 696	n:450000
KRT9   450000 perm   168 sec   (2675 perm/sec)   p_kst 1.546667e-03   p_cons 7.963111e-01   p_joint 2.367333e-02

Joint ci ratio: 3.729951e-02	ci left: 2.301030e-02	ci right 2.388702e-02	k: 10785	n:460000
Cons ci ratio: 2.922849e-03	ci left: 7.951768e-01	ci right 7.975065e-01	k: 366318	n:460000
KS ci ratio: 1.472090e-01	ci left: 1.425815e-03	ci right 1.654450e-03	k: 707	n:460000
KRT9   460000 perm   174 sec   (2646 perm/sec)   p_kst 1.536957e-03   p_cons 7.963435e-01   p_joint 2.344565e-02

Joint ci ratio: 3.642857e-02	ci left: 2.360649e-02	ci right 2.448449e-02	k: 11300	n:470000
Cons ci ratio: 2.892772e-03	ci left: 7.950561e-01	ci right 7.973615e-01	k: 374219	n:470000
KS ci ratio: 1.455732e-01	ci left: 1.428274e-03	ci right 1.654538e-03	k: 723	n:470000
KRT9   470000 perm   180 sec   (2617 perm/sec)   p_kst 1.538298e-03   p_cons 7.962106e-01   p_joint 2.404255e-02

Joint ci ratio: 3.639836e-02	ci left: 2.316414e-02	ci right 2.402496e-02	k: 11324	n:480000
Cons ci ratio: 2.862170e-03	ci left: 7.951035e-01	ci right 7.973846e-01	k: 382198	n:480000
KS ci ratio: 1.436026e-01	ci left: 1.438678e-03	ci right 1.663240e-03	k: 743	n:480000
KRT9   480000 perm   185 sec   (2589 perm/sec)   p_kst 1.547917e-03   p_cons 7.962458e-01   p_joint 2.359167e-02

Joint ci ratio: 3.612265e-02	ci left: 2.304528e-02	ci right 2.389506e-02	k: 11499	n:490000
Cons ci ratio: 2.832572e-03	ci left: 7.951430e-01	ci right 7.974005e-01	k: 390174	n:490000
KS ci ratio: 1.423646e-01	ci left: 1.434899e-03	ci right 1.656776e-03	k: 756	n:490000
KRT9   490000 perm   191 sec   (2562 perm/sec)   p_kst 1.542857e-03   p_cons 7.962735e-01   p_joint 2.346735e-02

Joint ci ratio: 3.571552e-02	ci left: 2.310567e-02	ci right 2.394787e-02	k: 11762	n:500000
Cons ci ratio: 2.803667e-03	ci left: 7.952050e-01	ci right 7.974396e-01	k: 398162	n:500000
KS ci ratio: 1.414343e-01	ci left: 1.425490e-03	ci right 1.644351e-03	k: 766	n:500000
KRT9   500000 perm   197 sec   (2534 perm/sec)   p_kst 1.532000e-03   p_cons 7.963240e-01   p_joint 2.352400e-02

Joint ci ratio: 3.534593e-02	ci left: 2.313263e-02	ci right 2.396691e-02	k: 12009	n:510000
Cons ci ratio: 2.775544e-03	ci left: 7.952745e-01	ci right 7.974868e-01	k: 406155	n:510000
KS ci ratio: 1.396249e-01	ci left: 1.435377e-03	ci right 1.652702e-03	k: 786	n:510000
KRT9   510000 perm   203 sec   (2507 perm/sec)   p_kst 1.541176e-03   p_cons 7.963824e-01   p_joint 2.354706e-02

Joint ci ratio: 3.502124e-02	ci left: 2.311475e-02	ci right 2.394057e-02	k: 12233	n:520000
Cons ci ratio: 2.749099e-03	ci left: 7.952413e-01	ci right 7.974324e-01	k: 414096	n:520000
KS ci ratio: 1.390970e-01	ci left: 1.418909e-03	ci right 1.632860e-03	k: 792	n:520000
KRT9   520000 perm   210 sec   (2481 perm/sec)   p_kst 1.523077e-03   p_cons 7.963385e-01   p_joint 2.352500e-02

Joint ci ratio: 3.477832e-02	ci left: 2.300216e-02	ci right 2.381815e-02	k: 12406	n:530000
Cons ci ratio: 2.723236e-03	ci left: 7.952283e-01	ci right 7.973987e-01	k: 422047	n:530000
KS ci ratio: 1.379710e-01	ci left: 1.415815e-03	ci right 1.627430e-03	k: 805	n:530000
KRT9   530000 perm   216 sec   (2454 perm/sec)   p_kst 1.518868e-03   p_cons 7.963151e-01   p_joint 2.340755e-02

Joint ci ratio: 3.410839e-02	ci left: 2.346854e-02	ci right 2.428473e-02	k: 12892	n:540000
Cons ci ratio: 2.698922e-03	ci left: 7.951157e-01	ci right 7.972663e-01	k: 429944	n:540000
KS ci ratio: 1.364553e-01	ci left: 1.421786e-03	ci right 1.631769e-03	k: 823	n:540000
KRT9   540000 perm   222 sec   (2428 perm/sec)   p_kst 1.524074e-03   p_cons 7.961926e-01   p_joint 2.387407e-02

Joint ci ratio: 3.414174e-02	ci left: 2.300750e-02	ci right 2.380844e-02	k: 12873	n:550000
Cons ci ratio: 2.673659e-03	ci left: 7.952004e-01	ci right 7.973311e-01	k: 437947	n:550000
KS ci ratio: 1.355541e-01	ci left: 1.415254e-03	ci right 1.622781e-03	k: 834	n:550000
KRT9   550000 perm   229 sec   (2403 perm/sec)   p_kst 1.516364e-03   p_cons 7.962673e-01   p_joint 2.340545e-02

Joint ci ratio: 3.382374e-02	ci left: 2.302689e-02	ci right 2.382090e-02	k: 13116	n:560000
Cons ci ratio: 2.650112e-03	ci left: 7.951569e-01	ci right 7.972687e-01	k: 445880	n:560000
KS ci ratio: 1.345113e-01	ci left: 1.412412e-03	ci right 1.617801e-03	k: 847	n:560000
KRT9   560000 perm   235 sec   (2378 perm/sec)   p_kst 1.512500e-03   p_cons 7.962143e-01   p_joint 2.342143e-02

Joint ci ratio: 3.355435e-02	ci left: 2.299170e-02	ci right 2.377806e-02	k: 13328	n:570000
Cons ci ratio: 2.627105e-03	ci left: 7.951238e-01	ci right 7.972171e-01	k: 453818	n:570000
KS ci ratio: 1.334922e-01	ci left: 1.409675e-03	ci right 1.612990e-03	k: 860	n:570000
KRT9   570000 perm   242 sec   (2355 perm/sec)   p_kst 1.508772e-03   p_cons 7.961719e-01   p_joint 2.338246e-02

Joint ci ratio: 3.327494e-02	ci left: 2.297998e-02	ci right 2.375927e-02	k: 13553	n:580000
Cons ci ratio: 2.604853e-03	ci left: 7.950711e-01	ci right 7.971466e-01	k: 461744	n:580000
KS ci ratio: 1.319677e-01	ci left: 1.418708e-03	ci right 1.620806e-03	k: 880	n:580000
KRT9   580000 perm   249 sec   (2331 perm/sec)   p_kst 1.517241e-03   p_cons 7.961103e-01   p_joint 2.336724e-02

Joint ci ratio: 3.271425e-02	ci left: 2.336884e-02	ci right 2.414771e-02	k: 14016	n:590000
Cons ci ratio: 2.582281e-03	ci left: 7.951308e-01	ci right 7.971883e-01	k: 469735	n:590000
KS ci ratio: 1.308584e-01	ci left: 1.419250e-03	ci right 1.619594e-03	k: 895	n:590000
KRT9   590000 perm   256 sec   (2308 perm/sec)   p_kst 1.516949e-03   p_cons 7.961610e-01   p_joint 2.375593e-02

Joint ci ratio: 3.275560e-02	ci left: 2.293134e-02	ci right 2.369661e-02	k: 13987	n:600000
Cons ci ratio: 2.560653e-03	ci left: 7.951417e-01	ci right 7.971821e-01	k: 477698	n:600000
KS ci ratio: 1.298480e-01	ci left: 1.418169e-03	ci right 1.616694e-03	k: 909	n:600000
KRT9   600000 perm   262 sec   (2287 perm/sec)   p_kst 1.515000e-03   p_cons 7.961633e-01   p_joint 2.331167e-02

Joint ci ratio: 3.271417e-02	ci left: 2.262039e-02	ci right 2.337431e-02	k: 14027	n:610000
Cons ci ratio: 2.539406e-03	ci left: 7.951721e-01	ci right 7.971956e-01	k: 485673	n:610000
KS ci ratio: 1.289306e-01	ci left: 1.415541e-03	ci right 1.612192e-03	k: 922	n:610000
KRT9   610000 perm   269 sec   (2266 perm/sec)   p_kst 1.511475e-03   p_cons 7.961852e-01   p_joint 2.299508e-02

Joint ci ratio: 3.191489e-02	ci left: 2.337560e-02	ci right 2.413531e-02	k: 14727	n:620000
Cons ci ratio: 2.518253e-03	ci left: 7.952565e-01	ci right 7.972633e-01	k: 493682	n:620000
KS ci ratio: 1.280324e-01	ci left: 1.413004e-03	ci right 1.607831e-03	k: 935	n:620000
KRT9   620000 perm   276 sec   (2244 perm/sec)   p_kst 1.508065e-03   p_cons 7.962613e-01   p_joint 2.375323e-02

Joint ci ratio: 3.163952e-02	ci left: 2.340926e-02	ci right 2.416338e-02	k: 14984	n:630000
Cons ci ratio: 2.498244e-03	ci left: 7.952572e-01	ci right 7.972480e-01	k: 501640	n:630000
KS ci ratio: 1.266192e-01	ci left: 1.422847e-03	ci right 1.616704e-03	k: 956	n:630000
KRT9   630000 perm   283 sec   (2222 perm/sec)   p_kst 1.517460e-03   p_cons 7.962540e-01   p_joint 2.378413e-02

Joint ci ratio: 3.169431e-02	ci left: 2.297365e-02	ci right 2.371505e-02	k: 14939	n:640000
Cons ci ratio: 2.477975e-03	ci left: 7.953534e-01	ci right 7.973283e-01	k: 509659	n:640000
KS ci ratio: 1.257681e-01	ci left: 1.420286e-03	ci right 1.612396e-03	k: 969	n:640000
KRT9   640000 perm   291 sec   (2201 perm/sec)   p_kst 1.514063e-03   p_cons 7.963422e-01   p_joint 2.334219e-02

Joint ci ratio: 3.144048e-02	ci left: 2.298958e-02	ci right 2.372544e-02	k: 15181	n:650000
Cons ci ratio: 2.458577e-03	ci left: 7.953959e-01	ci right 7.973553e-01	k: 517645	n:650000
KS ci ratio: 1.249976e-01	ci left: 1.416318e-03	ci right 1.606631e-03	k: 981	n:650000
KRT9   650000 perm   298 sec   (2182 perm/sec)   p_kst 1.509231e-03   p_cons 7.963769e-01   p_joint 2.335538e-02

Joint ci ratio: 2.864947e-02	ci left: 2.718803e-02	ci right 2.797976e-02	k: 18204	n:660000
Cons ci ratio: 2.439513e-03	ci left: 7.954523e-01	ci right 7.973966e-01	k: 525641	n:660000
KS ci ratio: 1.239293e-01	ci left: 1.419815e-03	ci right 1.608847e-03	k: 998	n:660000
KRT9   660000 perm   305 sec   (2163 perm/sec)   p_kst 1.512121e-03   p_cons 7.964258e-01   p_joint 2.758182e-02

Joint ci ratio: 2.862323e-02	ci left: 2.684144e-02	ci right 2.762235e-02	k: 18244	n:670000
Cons ci ratio: 2.421431e-03	ci left: 7.954338e-01	ci right 7.973637e-01	k: 533588	n:670000
KS ci ratio: 1.231310e-01	ci left: 1.417427e-03	ci right 1.604836e-03	k: 1011	n:670000
KRT9   670000 perm   312 sec   (2144 perm/sec)   p_kst 1.508955e-03   p_cons 7.964000e-01   p_joint 2.722985e-02

Joint ci ratio: 2.843355e-02	ci left: 2.680443e-02	ci right 2.757901e-02	k: 18489	n:680000
Cons ci ratio: 2.403582e-03	ci left: 7.954380e-01	ci right 7.973536e-01	k: 541550	n:680000
KS ci ratio: 1.221689e-01	ci left: 1.419390e-03	ci right 1.605487e-03	k: 1027	n:680000
KRT9   680000 perm   320 sec   (2125 perm/sec)   p_kst 1.510294e-03   p_cons 7.963971e-01   p_joint 2.718971e-02

Joint ci ratio: 2.823907e-02	ci left: 2.678434e-02	ci right 2.755297e-02	k: 18745	n:690000
Cons ci ratio: 2.386101e-03	ci left: 7.954450e-01	ci right 7.973467e-01	k: 549514	n:690000
KS ci ratio: 1.211709e-01	ci left: 1.422707e-03	ci right 1.607606e-03	k: 1044	n:690000
KRT9   690000 perm   327 sec   (2107 perm/sec)   p_kst 1.513043e-03   p_cons 7.963971e-01   p_joint 2.716667e-02

Joint ci ratio: 2.831150e-02	ci left: 2.627962e-02	ci right 2.703573e-02	k: 18659	n:700000
Cons ci ratio: 2.368798e-03	ci left: 7.954791e-01	ci right 7.973670e-01	k: 557497	n:700000
KS ci ratio: 1.200839e-01	ci left: 1.428707e-03	ci right 1.612601e-03	k: 1063	n:700000
KRT9   700000 perm   335 sec   (2089 perm/sec)   p_kst 1.518571e-03   p_cons 7.964243e-01   p_joint 2.665571e-02

Joint ci ratio: 2.812712e-02	ci left: 2.625352e-02	ci right 2.700387e-02	k: 18905	n:710000
Cons ci ratio: 2.352877e-03	ci left: 7.953726e-01	ci right 7.972476e-01	k: 565381	n:710000
KS ci ratio: 1.192463e-01	ci left: 1.429078e-03	ci right 1.611647e-03	k: 1078	n:710000
KRT9   710000 perm   343 sec   (2072 perm/sec)   p_kst 1.518310e-03   p_cons 7.963113e-01   p_joint 2.662676e-02

Joint ci ratio: 2.792758e-02	ci left: 2.626264e-02	ci right 2.700784e-02	k: 19176	n:720000
Cons ci ratio: 2.336981e-03	ci left: 7.953094e-01	ci right 7.971716e-01	k: 573294	n:720000
KS ci ratio: 1.185889e-01	ci left: 1.425401e-03	ci right 1.606426e-03	k: 1090	n:720000
KRT9   720000 perm   351 sec   (2054 perm/sec)   p_kst 1.513889e-03   p_cons 7.962417e-01   p_joint 2.663333e-02

Joint ci ratio: 2.773296e-02	ci left: 2.627017e-02	ci right 2.701031e-02	k: 19446	n:730000
Cons ci ratio: 2.321188e-03	ci left: 7.952782e-01	ci right 7.971277e-01	k: 581229	n:730000
KS ci ratio: 1.175163e-01	ci left: 1.432463e-03	ci right 1.612625e-03	k: 1110	n:730000
KRT9   730000 perm   358 sec   (2037 perm/sec)   p_kst 1.520548e-03   p_cons 7.962041e-01   p_joint 2.663836e-02

Joint ci ratio: 2.931425e-02	ci left: 2.324862e-02	ci right 2.394160e-02	k: 17459	n:740000
Cons ci ratio: 2.306123e-03	ci left: 7.951897e-01	ci right 7.970269e-01	k: 589121	n:740000
KS ci ratio: 1.168349e-01	ci left: 1.430158e-03	ci right 1.608916e-03	k: 1123	n:740000
KRT9   740000 perm   367 sec   (2019 perm/sec)   p_kst 1.517568e-03   p_cons 7.961095e-01   p_joint 2.359324e-02

Joint ci ratio: 2.737604e-02	ci left: 2.624626e-02	ci right 2.697607e-02	k: 19957	n:750000
Cons ci ratio: 2.290915e-03	ci left: 7.951650e-01	ci right 7.969900e-01	k: 597059	n:750000
KS ci ratio: 1.159102e-01	ci left: 1.434391e-03	ci right 1.612161e-03	k: 1141	n:750000
KRT9   750000 perm   375 sec   (2001 perm/sec)   p_kst 1.521333e-03   p_cons 7.960787e-01   p_joint 2.660933e-02

Joint ci ratio: 2.713482e-02	ci left: 2.636355e-02	ci right 2.709006e-02	k: 20311	n:760000
Cons ci ratio: 2.275616e-03	ci left: 7.951964e-01	ci right 7.970093e-01	k: 605039	n:760000
KS ci ratio: 1.147105e-01	ci left: 1.446186e-03	ci right 1.623438e-03	k: 1165	n:760000
KRT9   760000 perm   383 sec   (1986 perm/sec)   p_kst 1.532895e-03   p_cons 7.961039e-01   p_joint 2.672500e-02

Joint ci ratio: 2.730859e-02	ci left: 2.570633e-02	ci right 2.641932e-02	k: 20067	n:770000
Cons ci ratio: 2.260484e-03	ci left: 7.952465e-01	ci right 7.970474e-01	k: 613034	n:770000
KS ci ratio: 1.137388e-01	ci left: 1.452637e-03	ci right 1.629069e-03	k: 1185	n:770000
KRT9   770000 perm   391 sec   (1969 perm/sec)   p_kst 1.538961e-03   p_cons 7.961481e-01   p_joint 2.606104e-02

Joint ci ratio: 2.894310e-02	ci left: 2.264428e-02	ci right 2.331056e-02	k: 17921	n:780000
Cons ci ratio: 2.246492e-03	ci left: 7.951733e-01	ci right 7.969629e-01	k: 620934	n:780000
KS ci ratio: 1.132627e-01	ci left: 1.446469e-03	ci right 1.621369e-03	k: 1195	n:780000
KRT9   780000 perm   400 sec   (1952 perm/sec)   p_kst 1.532051e-03   p_cons 7.960692e-01   p_joint 2.297564e-02

Joint ci ratio: 2.849277e-02	ci left: 2.306525e-02	ci right 2.373319e-02	k: 18484	n:790000
Cons ci ratio: 2.232478e-03	ci left: 7.951426e-01	ci right 7.969210e-01	k: 628866	n:790000
KS ci ratio: 1.127925e-01	ci left: 1.440460e-03	ci right 1.613861e-03	k: 1205	n:790000
KRT9   790000 perm   408 sec   (1936 perm/sec)   p_kst 1.525316e-03   p_cons 7.960329e-01   p_joint 2.339747e-02

Joint ci ratio: 2.859617e-02	ci left: 2.262173e-02	ci right 2.327923e-02	k: 18359	n:800000
Cons ci ratio: 2.218074e-03	ci left: 7.952079e-01	ci right 7.969749e-01	k: 636874	n:800000
KS ci ratio: 1.121436e-01	ci left: 1.439462e-03	ci right 1.611680e-03	k: 1219	n:800000
KRT9   800000 perm   417 sec   (1920 perm/sec)   p_kst 1.523750e-03   p_cons 7.960925e-01   p_joint 2.294875e-02

Joint ci ratio: 2.978455e-02	ci left: 2.062511e-02	ci right 2.124992e-02	k: 16958	n:810000
Cons ci ratio: 2.203794e-03	ci left: 7.952939e-01	ci right 7.970497e-01	k: 644900	n:810000
KS ci ratio: 1.118238e-01	ci left: 1.430090e-03	ci right 1.600667e-03	k: 1226	n:810000
KRT9   810000 perm   425 sec   (1905 perm/sec)   p_kst 1.513580e-03   p_cons 7.961728e-01   p_joint 2.093580e-02

Joint ci ratio: 2.783402e-02	ci left: 2.328826e-02	ci right 2.394682e-02	k: 19365	n:820000
Cons ci ratio: 2.190223e-03	ci left: 7.953130e-01	ci right 7.970580e-01	k: 652873	n:820000
KS ci ratio: 1.110570e-01	ci left: 1.432804e-03	ci right 1.602456e-03	k: 1243	n:820000
KRT9   820000 perm   434 sec   (1889 perm/sec)   p_kst 1.515854e-03   p_cons 7.961866e-01   p_joint 2.361585e-02

Joint ci ratio: 2.768115e-02	ci left: 2.326492e-02	ci right 2.391914e-02	k: 19580	n:830000
Cons ci ratio: 2.176850e-03	ci left: 7.953390e-01	ci right 7.970734e-01	k: 660852	n:830000
KS ci ratio: 1.104374e-01	ci left: 1.431941e-03	ci right 1.600484e-03	k: 1257	n:830000
KRT9   830000 perm   443 sec   (1874 perm/sec)   p_kst 1.514458e-03   p_cons 7.962072e-01   p_joint 2.359036e-02

Joint ci ratio: 2.751441e-02	ci left: 2.326933e-02	ci right 2.391967e-02	k: 19818	n:840000
Cons ci ratio: 2.163743e-03	ci left: 7.953608e-01	ci right 7.970848e-01	k: 668828	n:840000
KS ci ratio: 1.099580e-01	ci left: 1.427629e-03	ci right 1.594887e-03	k: 1268	n:840000
KRT9   840000 perm   452 sec   (1859 perm/sec)   p_kst 1.509524e-03   p_cons 7.962238e-01   p_joint 2.359286e-02

Joint ci ratio: 2.736042e-02	ci left: 2.325729e-02	ci right 2.390361e-02	k: 20042	n:850000
Cons ci ratio: 2.151034e-03	ci left: 7.953574e-01	ci right 7.970712e-01	k: 676783	n:850000
KS ci ratio: 1.091861e-01	ci left: 1.431429e-03	ci right 1.597880e-03	k: 1286	n:850000
KRT9   850000 perm   461 sec   (1845 perm/sec)   p_kst 1.512941e-03   p_cons 7.962153e-01   p_joint 2.357882e-02

Joint ci ratio: 2.720212e-02	ci left: 2.325710e-02	ci right 2.389961e-02	k: 20276	n:860000
Cons ci ratio: 2.138477e-03	ci left: 7.953645e-01	ci right 7.970684e-01	k: 684747	n:860000
KS ci ratio: 1.088488e-01	ci left: 1.423833e-03	ci right 1.588856e-03	k: 1294	n:860000
KRT9   860000 perm   470 sec   (1830 perm/sec)   p_kst 1.504651e-03   p_cons 7.962174e-01   p_joint 2.357674e-02

Joint ci ratio: 2.707223e-02	ci left: 2.321353e-02	ci right 2.385172e-02	k: 20472	n:870000
Cons ci ratio: 2.127253e-03	ci left: 7.952012e-01	ci right 7.968957e-01	k: 692563	n:870000
KS ci ratio: 1.085563e-01	ci left: 1.415294e-03	ci right 1.578858e-03	k: 1301	n:870000
KRT9   870000 perm   479 sec   (1817 perm/sec)   p_kst 1.495402e-03   p_cons 7.960494e-01   p_joint 2.353103e-02

Joint ci ratio: 2.690754e-02	ci left: 2.323304e-02	ci right 2.386783e-02	k: 20723	n:880000
Cons ci ratio: 2.115268e-03	ci left: 7.951850e-01	ci right 7.968699e-01	k: 700505	n:880000
KS ci ratio: 1.079774e-01	ci left: 1.414689e-03	ci right 1.577257e-03	k: 1315	n:880000
KRT9   880000 perm   488 sec   (1802 perm/sec)   p_kst 1.494318e-03   p_cons 7.960284e-01   p_joint 2.354886e-02

Joint ci ratio: 2.677394e-02	ci left: 2.320413e-02	ci right 2.383493e-02	k: 20931	n:890000
Cons ci ratio: 2.103593e-03	ci left: 7.951523e-01	ci right 7.968278e-01	k: 708432	n:890000
KS ci ratio: 1.072865e-01	ci left: 1.417381e-03	ci right 1.579150e-03	k: 1332	n:890000
KRT9   890000 perm   498 sec   (1788 perm/sec)   p_kst 1.496629e-03   p_cons 7.959910e-01   p_joint 2.351798e-02

Joint ci ratio: 2.663973e-02	ci left: 2.318029e-02	ci right 2.380723e-02	k: 21143	n:900000
Cons ci ratio: 2.091802e-03	ci left: 7.951682e-01	ci right 7.968343e-01	k: 716402	n:900000
KS ci ratio: 1.068071e-01	ci left: 1.414609e-03	ci right 1.575294e-03	k: 1344	n:900000
KRT9   900000 perm   507 sec   (1775 perm/sec)   p_kst 1.493333e-03   p_cons 7.960022e-01   p_joint 2.349222e-02

Joint ci ratio: 2.650816e-02	ci left: 2.315588e-02	ci right 2.377903e-02	k: 21354	n:910000
Cons ci ratio: 2.080143e-03	ci left: 7.951937e-01	ci right 7.968506e-01	k: 724381	n:910000
KS ci ratio: 1.062947e-01	ci left: 1.412968e-03	ci right 1.572649e-03	k: 1357	n:910000
KRT9   910000 perm   516 sec   (1762 perm/sec)   p_kst 1.491209e-03   p_cons 7.960231e-01   p_joint 2.346593e-02

Joint ci ratio: 2.364206e-02	ci left: 2.867209e-02	ci right 2.935914e-02	k: 26693	n:920000
Cons ci ratio: 2.068733e-03	ci left: 7.952099e-01	ci right 7.968578e-01	k: 732352	n:920000
KS ci ratio: 1.055586e-01	ci left: 1.417715e-03	ci right 1.576754e-03	k: 1376	n:920000
KRT9   920000 perm   526 sec   (1749 perm/sec)   p_kst 1.495652e-03   p_cons 7.960348e-01   p_joint 2.901413e-02

Joint ci ratio: 2.332660e-02	ci left: 2.912710e-02	ci right 2.981562e-02	k: 27407	n:930000
Cons ci ratio: 2.056819e-03	ci left: 7.953346e-01	ci right 7.969732e-01	k: 740424	n:930000
KS ci ratio: 1.049129e-01	ci left: 1.420270e-03	ci right 1.578560e-03	k: 1393	n:930000
KRT9   930000 perm   536 sec   (1736 perm/sec)   p_kst 1.497849e-03   p_cons 7.961548e-01   p_joint 2.946989e-02

Joint ci ratio: 2.332379e-02	ci left: 2.883305e-02	ci right 2.951453e-02	k: 27422	n:940000
Cons ci ratio: 2.045934e-03	ci left: 7.953256e-01	ci right 7.969555e-01	k: 748373	n:940000
KS ci ratio: 1.043900e-01	ci left: 1.419664e-03	ci right 1.577050e-03	k: 1407	n:940000
KRT9   940000 perm   545 sec   (1724 perm/sec)   p_kst 1.496809e-03   p_cons 7.961415e-01   p_joint 2.917234e-02

Joint ci ratio: 2.321441e-02	ci left: 2.880164e-02	ci right 2.947913e-02	k: 27682	n:950000
Cons ci ratio: 2.034975e-03	ci left: 7.953559e-01	ci right 7.969771e-01	k: 756359	n:950000
KS ci ratio: 1.036562e-01	ci left: 1.425225e-03	ci right 1.582050e-03	k: 1427	n:950000
KRT9   950000 perm   555 sec   (1711 perm/sec)   p_kst 1.502105e-03   p_cons 7.961674e-01   p_joint 2.913895e-02

Joint ci ratio: 2.309760e-02	ci left: 2.879263e-02	ci right 2.946646e-02	k: 27963	n:960000
Cons ci ratio: 2.024743e-03	ci left: 7.952968e-01	ci right 7.969097e-01	k: 764260	n:960000
KS ci ratio: 1.031876e-01	ci left: 1.423571e-03	ci right 1.579462e-03	k: 1440	n:960000
KRT9   960000 perm   565 sec   (1698 perm/sec)   p_kst 1.500000e-03   p_cons 7.961042e-01   p_joint 2.912813e-02

Joint ci ratio: 2.370321e-02	ci left: 2.709755e-02	ci right 2.774857e-02	k: 26599	n:970000
Cons ci ratio: 2.014260e-03	ci left: 7.953040e-01	ci right 7.969086e-01	k: 772224	n:970000
KS ci ratio: 1.025842e-01	ci left: 1.425970e-03	ci right 1.581155e-03	k: 1457	n:970000
KRT9   970000 perm   575 sec   (1686 perm/sec)   p_kst 1.502062e-03   p_cons 7.961072e-01   p_joint 2.742165e-02

Joint ci ratio: 2.292596e-02	ci left: 2.863618e-02	ci right 2.930130e-02	k: 28388	n:980000
Cons ci ratio: 2.003831e-03	ci left: 7.953285e-01	ci right 7.969248e-01	k: 780205	n:980000
KS ci ratio: 1.023043e-01	ci left: 1.419373e-03	ci right 1.573394e-03	k: 1465	n:980000
KRT9   980000 perm   586 sec   (1674 perm/sec)   p_kst 1.494898e-03   p_cons 7.961276e-01   p_joint 2.896735e-02

Joint ci ratio: 2.275425e-02	ci left: 2.877479e-02	ci right 2.943807e-02	k: 28814	n:990000
Cons ci ratio: 1.994022e-03	ci left: 7.952777e-01	ci right 7.968660e-01	k: 788112	n:990000
KS ci ratio: 1.015448e-01	ci left: 1.426692e-03	ci right 1.580289e-03	k: 1487	n:990000
KRT9   990000 perm   596 sec   (1662 perm/sec)   p_kst 1.502020e-03   p_cons 7.960727e-01   p_joint 2.910505e-02

Joint ci ratio: 2.228776e-02	ci left: 2.967149e-02	ci right 3.034124e-02	k: 30005	n:1000000
Cons ci ratio: 1.983939e-03	ci left: 7.952960e-01	ci right 7.968763e-01	k: 796087	n:1000000
KS ci ratio: 1.011380e-01	ci left: 1.424120e-03	ci right 1.576790e-03	k: 1499	n:1000000
KRT9   1000000 perm   606 sec   (1650 perm/sec)   p_kst 1.499000e-03   p_cons 7.960870e-01   p_joint 3.000500e-02

Joint ci ratio: 2.217981e-02	ci left: 2.966620e-02	ci right 3.033254e-02	k: 30298	n:1010000
Cons ci ratio: 1.973978e-03	ci left: 7.953189e-01	ci right 7.968913e-01	k: 804067	n:1010000
KS ci ratio: 1.008362e-01	ci left: 1.418706e-03	ci right 1.570315e-03	k: 1508	n:1010000
KRT9   1010000 perm   616 sec   (1639 perm/sec)   p_kst 1.493069e-03   p_cons 7.961059e-01   p_joint 2.999802e-02

Joint ci ratio: 2.207565e-02	ci left: 2.965517e-02	ci right 3.031809e-02	k: 30585	n:1020000
Cons ci ratio: 1.964000e-03	ci left: 7.953688e-01	ci right 7.969334e-01	k: 812075	n:1020000
KS ci ratio: 1.004378e-01	ci left: 1.416265e-03	ci right 1.566980e-03	k: 1520	n:1020000
KRT9   1020000 perm   627 sec   (1627 perm/sec)   p_kst 1.490196e-03   p_cons 7.961520e-01   p_joint 2.998529e-02

Joint ci ratio: 2.196707e-02	ci left: 2.965981e-02	ci right 3.031954e-02	k: 30888	n:1030000
Cons ci ratio: 1.954405e-03	ci left: 7.953789e-01	ci right 7.969359e-01	k: 820043	n:1030000
KS ci ratio: 1.000441e-01	ci left: 1.413874e-03	ci right 1.563709e-03	k: 1532	n:1030000
KRT9   1030000 perm   637 sec   (1616 perm/sec)   p_kst 1.487379e-03   p_cons 7.961583e-01   p_joint 2.998835e-02

Joint ci ratio: 2.284741e-02	ci left: 2.721140e-02	ci right 2.784124e-02	k: 28626	n:1040000
Cons ci ratio: 1.944782e-03	ci left: 7.954168e-01	ci right 7.969662e-01	k: 828040	n:1040000
KS ci ratio: 9.946170e-02	ci left: 1.417155e-03	ci right 1.566413e-03	k: 1550	n:1040000
KRT9   1040000 perm   648 sec   (1605 perm/sec)   p_kst 1.490385e-03   p_cons 7.961923e-01   p_joint 2.752500e-02

Outputting figure to mutsig2_images.part000000000093/KRT9.2_1900_1040000_0.0014904_0.79619_0.027525.png
                gene_name: KRT9
               theta_stop: 0.099 
                    nperm: 1040000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 99 percent done.
KRTAP10-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
Cons ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
KRTAP10-2   10000 perm   1 sec   (7415 perm/sec)   p_kst 9.368000e-01   p_cons 8.180000e-02   p_joint 2.110000e-01

Joint ci ratio: 6.087983e-02	ci left: 1.664471e-01	ci right 1.769485e-01	k: 3433	n:20000
Cons ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
KS ci ratio: 7.180384e-03	ci left: 9.336975e-01	ci right 9.404748e-01	k: 18743	n:20000
KRTAP10-2   20000 perm   3 sec   (6301 perm/sec)   p_kst 9.371500e-01   p_cons 8.925000e-02   p_joint 1.716500e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-2.2_772_20000_0.93715_0.08925_0.17165.png
                gene_name: KRTAP10-2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000093
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 93 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1555>
Subject: Job 4422125: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1555>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000094> was used as the working directory.
Started at Wed Oct 24 17:58:01 2012
Results reported at Wed Oct 24 21:23:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000094.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000094.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 94  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000094.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13283.69 sec.
    Max Memory :      9344 MB
    Max Swap   :     11735 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
94
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 94
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 94: processing genes 8415 - 8504
Calculating significance of each gene.
Using projection method.
8415	KRTAP10-8	5.360040e-01
8416	KRTAP10-9	6.011398e-02
8417	KRTAP11-1	1.000442e-04
8418	KRTAP12-1	8.605003e-02
8419	KRTAP12-2	8.606705e-02
8420	KRTAP12-3	1
8421	KRTAP12-4	5.389812e-01
8422	KRTAP13-1	5.212061e-01
8423	KRTAP13-2	2.908300e-01
8424	KRTAP13-3	1.506308e-01
8425	KRTAP13-4	6.060548e-02
8426	KRTAP15-1	1.891379e-05
8427	KRTAP17-1	1
8428	KRTAP19-1	9.002634e-02
8429	KRTAP19-2	2.091328e-01
8430	KRTAP19-3	6.034355e-03
8431	KRTAP19-4	3.016227e-01
8432	KRTAP19-5	1
8433	KRTAP19-6	2.464332e-05
8434	KRTAP19-7	1
8435	KRTAP19-8	1
8436	KRTAP20-1	2.474309e-01
8437	KRTAP20-2	1.883305e-01
8438	KRTAP21-1	2.042755e-02
8439	KRTAP21-2	7.281157e-02
8440	KRTAP22-1	2.204344e-01
8441	KRTAP23-1	2.131364e-03
8442	KRTAP24-1	2.013630e-02
8443	KRTAP26-1	2.593817e-03
8444	KRTAP27-1	2.722030e-02
8445	KRTAP3-1	3.335703e-01
8446	KRTAP3-2	1
8447	KRTAP3-3	6.680493e-02
8448	KRTAP4-1	4.457623e-01
8449	KRTAP4-11	2.580900e-03
8450	KRTAP4-12	3.982756e-01
8451	KRTAP4-2	6.634418e-02
8452	KRTAP4-3	1.352042e-01
8453	KRTAP4-4	1
8454	KRTAP4-5	1.340835e-01
8455	KRTAP4-7	1
8456	KRTAP4-8	4.433518e-01
8457	KRTAP4-9	4.083397e-01
8458	KRTAP5-1	6.039987e-01
8459	KRTAP5-10	3.423876e-01
8460	KRTAP5-11	2.599712e-01
8461	KRTAP5-2	1
8462	KRTAP5-3	7.518250e-01
8463	KRTAP5-4	1
In gene KRTAP5-5 the following bins exceed PROBCAP:
    LUAD-44-6148-TP	categ 6	N = 678     n = 1	mu =   1.00e-07
    LUAD-75-6212-TP	categ 6	N = 678     n = 1	mu =   2.01e-07
8464	KRTAP5-5	1.132427e-14
8465	KRTAP5-6	1
8466	KRTAP5-7	1
8467	KRTAP5-8	1.697605e-01
8468	KRTAP5-9	4.504687e-01
8469	KRTAP6-1	8.348331e-03
8470	KRTAP6-2	1.347273e-03
8471	KRTAP6-3	1
8472	KRTAP8-1	8.119395e-04
8473	KRTAP9-2	1.957632e-02
8474	KRTAP9-3	1
8475	KRTAP9-4	1.555970e-03
8476	KRTAP9-8	3.607737e-01
8477	KRTAP9-9	1
8478	KRTCAP2	5.861053e-01
8479	KRTCAP3	5.666374e-01
8480	KRTDAP	1
8481	KSR1	2.550322e-01
8482	KSR2	9.920945e-01
8483	KTELC1	9.146614e-01
8484	KTI12	6.829721e-01
8485	KTN1	8.080054e-01
8486	KY	8.610590e-01
8487	KYNU	1
8488	L1CAM	9.994689e-01
8489	L1TD1	8.871282e-01
8490	L2HGDH	6.407235e-01
8491	L3MBTL	8.509649e-01
8492	L3MBTL2	9.117634e-01
8493	L3MBTL3	1
8494	L3MBTL4	5.273093e-01
8495	LACE1	1
8496	LACRT	1.853912e-02
8497	LACTB	7.828198e-01
8498	LACTB2	6.705437e-01
8499	LAD1	9.362758e-01
8500	LAG3	7.224518e-01
8501	LAGE3	1
8502	LAIR1	2.369458e-01
8503	LAIR2	3.618697e-02
8504	LALBA	1
Done

Running MutSig 2:
Scatter job 94: processing genes 8415 - 8504
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRTAP5-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KRTAP5-5   10000 perm   2 sec   (4905 perm/sec)   p_kst 1.000000e-04   p_cons 1   p_joint 1.050000e-02

Joint ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KRTAP5-5   20000 perm   8 sec   (2636 perm/sec)   p_kst 5.000000e-05   p_cons 1   p_joint 8.200000e-03

Joint ci ratio: 3.052577e-01	ci left: 4.633018e-03	ci right 6.331580e-03	k: 163	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KRTAP5-5   30000 perm   10 sec   (2989 perm/sec)   p_kst 3.333333e-05   p_cons 1   p_joint 5.433333e-03

Joint ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KRTAP5-5   40000 perm   13 sec   (3179 perm/sec)   p_kst 2.500000e-05   p_cons 1   p_joint 3.800000e-03

Joint ci ratio: 4.017973e-01	ci left: 1.519490e-03	ci right 2.300160e-03	k: 94	n:50000
Cons ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KRTAP5-5   50000 perm   15 sec   (3291 perm/sec)   p_kst 2.000000e-05   p_cons 1   p_joint 1.880000e-03

Joint ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
Cons ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KRTAP5-5   60000 perm   18 sec   (3356 perm/sec)   p_kst 1.666667e-05   p_cons 1   p_joint 1.616667e-03

Joint ci ratio: 3.956997e-01	ci left: 1.123860e-03	ci right 1.690196e-03	k: 97	n:70000
Cons ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KRTAP5-5   70000 perm   21 sec   (3389 perm/sec)   p_kst 1.428571e-05   p_cons 1   p_joint 1.385714e-03

Joint ci ratio: 4.176409e-01	ci left: 8.711318e-04	ci right 1.341257e-03	k: 87	n:80000
Cons ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KRTAP5-5   80000 perm   24 sec   (3402 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 1.087500e-03

Joint ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
Cons ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KRTAP5-5   90000 perm   26 sec   (3402 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 9.444444e-04

Joint ci ratio: 4.062940e-01	ci left: 7.417123e-04	ci right 1.128181e-03	k: 92	n:100000
Cons ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KRTAP5-5   100000 perm   29 sec   (3393 perm/sec)   p_kst 1.000000e-05   p_cons 1   p_joint 9.200000e-04

Joint ci ratio: 4.177043e-01	ci left: 6.335328e-04	ci right 9.754933e-04	k: 87	n:110000
Cons ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KRTAP5-5   110000 perm   33 sec   (3378 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 7.909091e-04

Joint ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
Cons ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KRTAP5-5   120000 perm   36 sec   (3358 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 7.333333e-04

Joint ci ratio: 4.020350e-01	ci left: 5.843581e-04	ci right 8.847914e-04	k: 94	n:130000
Cons ci ratio: 3.015338e-05	ci left: 9.999716e-01	ci right 1	k: 130000	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KRTAP5-5   130000 perm   39 sec   (3332 perm/sec)   p_kst 7.692308e-06   p_cons 1   p_joint 7.230769e-04

Joint ci ratio: 3.938341e-01	ci left: 5.683292e-04	ci right 8.530105e-04	k: 98	n:140000
Cons ci ratio: 2.799960e-05	ci left: 9.999737e-01	ci right 1	k: 140000	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KRTAP5-5   140000 perm   42 sec   (3305 perm/sec)   p_kst 7.142857e-06   p_cons 1   p_joint 7.000000e-04

Joint ci ratio: 3.824176e-01	ci left: 5.665376e-04	ci right 8.400277e-04	k: 104	n:150000
Cons ci ratio: 2.613298e-05	ci left: 9.999754e-01	ci right 1	k: 150000	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KRTAP5-5   150000 perm   46 sec   (3274 perm/sec)   p_kst 6.666667e-06   p_cons 1   p_joint 6.933333e-04

Joint ci ratio: 3.788328e-01	ci left: 5.424316e-04	ci right 8.012191e-04	k: 106	n:160000
Cons ci ratio: 2.449969e-05	ci left: 9.999769e-01	ci right 1	k: 160000	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KRTAP5-5   160000 perm   49 sec   (3244 perm/sec)   p_kst 6.250000e-06   p_cons 1   p_joint 6.625000e-04

Joint ci ratio: 3.686389e-01	ci left: 5.425032e-04	ci right 7.926828e-04	k: 112	n:170000
Cons ci ratio: 2.305855e-05	ci left: 9.999783e-01	ci right 1	k: 170000	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KRTAP5-5   170000 perm   53 sec   (3213 perm/sec)   p_kst 5.882353e-06   p_cons 1   p_joint 6.588235e-04

Joint ci ratio: 3.654241e-01	ci left: 5.224494e-04	ci right 7.607783e-04	k: 114	n:180000
Cons ci ratio: 2.177754e-05	ci left: 9.999795e-01	ci right 1	k: 180000	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KRTAP5-5   180000 perm   57 sec   (3181 perm/sec)   p_kst 5.555556e-06   p_cons 1   p_joint 6.333333e-04

Joint ci ratio: 3.519106e-01	ci left: 5.380545e-04	ci right 7.723539e-04	k: 123	n:190000
Cons ci ratio: 2.063136e-05	ci left: 9.999806e-01	ci right 1	k: 190000	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KRTAP5-5   190000 perm   60 sec   (3148 perm/sec)   p_kst 5.263158e-06   p_cons 1   p_joint 6.473684e-04

Joint ci ratio: 3.562549e-01	ci left: 4.974839e-04	ci right 7.174108e-04	k: 120	n:200000
Cons ci ratio: 1.959980e-05	ci left: 9.999816e-01	ci right 1	k: 200000	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KRTAP5-5   200000 perm   64 sec   (3115 perm/sec)   p_kst 5.000000e-06   p_cons 1   p_joint 6.000000e-04

Joint ci ratio: 3.806470e-01	ci left: 4.089681e-04	ci right 6.052486e-04	k: 105	n:210000
Cons ci ratio: 1.866649e-05	ci left: 9.999824e-01	ci right 1	k: 210000	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KRTAP5-5   210000 perm   68 sec   (3080 perm/sec)   p_kst 4.761905e-06   p_cons 1   p_joint 5.000000e-04

Joint ci ratio: 3.824607e-01	ci left: 3.862683e-04	ci right 5.727596e-04	k: 104	n:220000
Cons ci ratio: 1.781802e-05	ci left: 9.999832e-01	ci right 1	k: 220000	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KRTAP5-5   220000 perm   72 sec   (3046 perm/sec)   p_kst 4.545455e-06   p_cons 1   p_joint 4.727273e-04

Joint ci ratio: 3.824647e-01	ci left: 3.694733e-04	ci right 5.478582e-04	k: 104	n:230000
Cons ci ratio: 1.704333e-05	ci left: 9.999840e-01	ci right 1	k: 230000	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KRTAP5-5   230000 perm   76 sec   (3011 perm/sec)   p_kst 4.347826e-06   p_cons 1   p_joint 4.521739e-04

Joint ci ratio: 3.880545e-01	ci left: 3.427883e-04	ci right 5.113275e-04	k: 101	n:240000
Cons ci ratio: 1.633320e-05	ci left: 9.999846e-01	ci right 1	k: 240000	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KRTAP5-5   240000 perm   81 sec   (2977 perm/sec)   p_kst 4.166667e-06   p_cons 1   p_joint 4.208333e-04

Joint ci ratio: 3.919208e-01	ci left: 3.218605e-04	ci right 4.820950e-04	k: 99	n:250000
Cons ci ratio: 1.567987e-05	ci left: 9.999852e-01	ci right 1	k: 250000	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KRTAP5-5   250000 perm   85 sec   (2945 perm/sec)   p_kst 4.000000e-06   p_cons 1   p_joint 3.960000e-04

Joint ci ratio: 4.000087e-01	ci left: 2.956277e-04	ci right 4.466456e-04	k: 95	n:260000
Cons ci ratio: 1.507681e-05	ci left: 9.999858e-01	ci right 1	k: 260000	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KRTAP5-5   260000 perm   89 sec   (2912 perm/sec)   p_kst 3.846154e-06   p_cons 1   p_joint 3.653846e-04

Joint ci ratio: 4.154499e-01	ci left: 2.614101e-04	ci right 4.015347e-04	k: 88	n:270000
Cons ci ratio: 1.451841e-05	ci left: 9.999863e-01	ci right 1	k: 270000	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KRTAP5-5   270000 perm   94 sec   (2879 perm/sec)   p_kst 3.703704e-06   p_cons 1   p_joint 3.259259e-04

Joint ci ratio: 4.042485e-01	ci left: 2.680903e-04	ci right 4.068822e-04	k: 93	n:280000
Cons ci ratio: 1.399990e-05	ci left: 9.999868e-01	ci right 1	k: 280000	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KRTAP5-5   280000 perm   98 sec   (2848 perm/sec)   p_kst 3.571429e-06   p_cons 1   p_joint 3.321429e-04

Joint ci ratio: 4.021169e-01	ci left: 2.619441e-04	ci right 3.966484e-04	k: 94	n:290000
Cons ci ratio: 1.351715e-05	ci left: 9.999873e-01	ci right 1	k: 290000	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KRTAP5-5   290000 perm   103 sec   (2817 perm/sec)   p_kst 3.448276e-06   p_cons 1   p_joint 3.241379e-04

Joint ci ratio: 3.939092e-01	ci left: 2.652115e-04	ci right 3.980878e-04	k: 98	n:300000
Cons ci ratio: 1.306658e-05	ci left: 9.999877e-01	ci right 1	k: 300000	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KRTAP5-5   300000 perm   108 sec   (2786 perm/sec)   p_kst 3.333333e-06   p_cons 1   p_joint 3.266667e-04

Joint ci ratio: 3.899904e-01	ci left: 2.624720e-04	ci right 3.923308e-04	k: 100	n:310000
Cons ci ratio: 1.264508e-05	ci left: 9.999881e-01	ci right 1	k: 310000	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KRTAP5-5   310000 perm   112 sec   (2756 perm/sec)   p_kst 3.225806e-06   p_cons 1   p_joint 3.225806e-04

Joint ci ratio: 3.880754e-01	ci left: 2.570889e-04	ci right 3.835000e-04	k: 101	n:320000
Cons ci ratio: 1.224992e-05	ci left: 9.999885e-01	ci right 1	k: 320000	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KRTAP5-5   320000 perm   117 sec   (2725 perm/sec)   p_kst 3.125000e-06   p_cons 1   p_joint 3.156250e-04

Joint ci ratio: 3.806823e-01	ci left: 2.602483e-04	ci right 3.851656e-04	k: 105	n:330000
Cons ci ratio: 1.187872e-05	ci left: 9.999888e-01	ci right 1	k: 330000	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KRTAP5-5   330000 perm   122 sec   (2697 perm/sec)   p_kst 3.030303e-06   p_cons 1   p_joint 3.181818e-04

Joint ci ratio: 3.919418e-01	ci left: 2.366600e-04	ci right 3.544857e-04	k: 99	n:340000
Cons ci ratio: 1.152934e-05	ci left: 9.999892e-01	ci right 1	k: 340000	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KRTAP5-5   340000 perm   127 sec   (2669 perm/sec)   p_kst 2.941176e-06   p_cons 1   p_joint 2.911765e-04

Joint ci ratio: 3.880807e-01	ci left: 2.350521e-04	ci right 3.506296e-04	k: 101	n:350000
Cons ci ratio: 1.119994e-05	ci left: 9.999895e-01	ci right 1	k: 350000	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KRTAP5-5   350000 perm   132 sec   (2642 perm/sec)   p_kst 2.857143e-06   p_cons 1   p_joint 2.885714e-04

Joint ci ratio: 4.000294e-01	ci left: 2.135070e-04	ci right 3.225810e-04	k: 95	n:360000
Cons ci ratio: 1.088883e-05	ci left: 9.999898e-01	ci right 1	k: 360000	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KRTAP5-5   360000 perm   138 sec   (2613 perm/sec)   p_kst 2.777778e-06   p_cons 1   p_joint 2.638889e-04

Joint ci ratio: 4.131535e-01	ci left: 1.931781e-04	ci right 2.959976e-04	k: 89	n:370000
Cons ci ratio: 1.059454e-05	ci left: 9.999900e-01	ci right 1	k: 370000	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KRTAP5-5   370000 perm   143 sec   (2586 perm/sec)   p_kst 2.702703e-06   p_cons 1   p_joint 2.405405e-04

Joint ci ratio: 4.042666e-01	ci left: 1.975386e-04	ci right 2.998109e-04	k: 93	n:380000
Cons ci ratio: 1.031574e-05	ci left: 9.999903e-01	ci right 1	k: 380000	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KRTAP5-5   380000 perm   148 sec   (2560 perm/sec)   p_kst 2.631579e-06   p_cons 1   p_joint 2.447368e-04

Joint ci ratio: 3.959295e-01	ci left: 2.016980e-04	ci right 3.034065e-04	k: 97	n:390000
Cons ci ratio: 1.005123e-05	ci left: 9.999905e-01	ci right 1	k: 390000	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KRTAP5-5   390000 perm   154 sec   (2534 perm/sec)   p_kst 2.564103e-06   p_cons 1   p_joint 2.487179e-04

Joint ci ratio: 3.979669e-01	ci left: 1.944050e-04	ci right 2.930733e-04	k: 96	n:400000
Cons ci ratio: 9.799951e-06	ci left: 9.999908e-01	ci right 1	k: 400000	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KRTAP5-5   400000 perm   159 sec   (2509 perm/sec)   p_kst 2.500000e-06   p_cons 1   p_joint 2.400000e-04

Joint ci ratio: 3.703541e-01	ci left: 2.227205e-04	ci right 3.260218e-04	k: 111	n:410000
Cons ci ratio: 9.560929e-06	ci left: 9.999910e-01	ci right 1	k: 410000	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KRTAP5-5   410000 perm   165 sec   (2485 perm/sec)   p_kst 2.439024e-06   p_cons 1   p_joint 2.707317e-04

Joint ci ratio: 3.670914e-01	ci left: 2.217383e-04	ci right 3.234606e-04	k: 113	n:420000
Cons ci ratio: 9.333289e-06	ci left: 9.999912e-01	ci right 1	k: 420000	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KRTAP5-5   420000 perm   171 sec   (2460 perm/sec)   p_kst 2.380952e-06   p_cons 1   p_joint 2.690476e-04

Joint ci ratio: 3.623544e-01	ci left: 2.229190e-04	ci right 3.235516e-04	k: 116	n:430000
Cons ci ratio: 9.116237e-06	ci left: 9.999914e-01	ci right 1	k: 430000	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KRTAP5-5   430000 perm   177 sec   (2435 perm/sec)   p_kst 2.325581e-06   p_cons 1   p_joint 2.697674e-04

Joint ci ratio: 3.577962e-01	ci left: 2.240541e-04	ci right 3.236306e-04	k: 119	n:440000
Cons ci ratio: 8.909050e-06	ci left: 9.999916e-01	ci right 1	k: 440000	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KRTAP5-5   440000 perm   182 sec   (2412 perm/sec)   p_kst 2.272727e-06   p_cons 1   p_joint 2.704545e-04

Joint ci ratio: 3.548516e-01	ci left: 2.231217e-04	ci right 3.212795e-04	k: 121	n:450000
Cons ci ratio: 8.711072e-06	ci left: 9.999918e-01	ci right 1	k: 450000	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KRTAP5-5   450000 perm   188 sec   (2388 perm/sec)   p_kst 2.222222e-06   p_cons 1   p_joint 2.688889e-04

Joint ci ratio: 3.563164e-01	ci left: 2.162914e-04	ci right 3.119281e-04	k: 120	n:460000
Cons ci ratio: 8.521702e-06	ci left: 9.999920e-01	ci right 1	k: 460000	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KRTAP5-5   460000 perm   194 sec   (2365 perm/sec)   p_kst 2.173913e-06   p_cons 1   p_joint 2.608696e-04

Joint ci ratio: 3.623586e-01	ci left: 2.039468e-04	ci right 2.960160e-04	k: 116	n:470000
Cons ci ratio: 8.340390e-06	ci left: 9.999922e-01	ci right 1	k: 470000	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KRTAP5-5   470000 perm   201 sec   (2342 perm/sec)   p_kst 2.127660e-06   p_cons 1   p_joint 2.468085e-04

Joint ci ratio: 4.021433e-01	ci left: 1.582561e-04	ci right 2.396452e-04	k: 94	n:480000
Cons ci ratio: 8.166633e-06	ci left: 9.999923e-01	ci right 1	k: 480000	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KRTAP5-5   480000 perm   207 sec   (2320 perm/sec)   p_kst 2.083333e-06   p_cons 1   p_joint 1.958333e-04

Joint ci ratio: 3.959398e-01	ci left: 1.605344e-04	ci right 2.414882e-04	k: 97	n:490000
Cons ci ratio: 7.999967e-06	ci left: 9.999925e-01	ci right 1	k: 490000	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KRTAP5-5   490000 perm   213 sec   (2298 perm/sec)   p_kst 2.040816e-06   p_cons 1   p_joint 1.979592e-04

Joint ci ratio: 3.880979e-01	ci left: 1.645352e-04	ci right 2.454430e-04	k: 101	n:500000
Cons ci ratio: 7.839969e-06	ci left: 9.999926e-01	ci right 1	k: 500000	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KRTAP5-5   500000 perm   220 sec   (2276 perm/sec)   p_kst 2.000000e-06   p_cons 1   p_joint 2.020000e-04

Joint ci ratio: 3.862097e-01	ci left: 1.630789e-04	ci right 2.427812e-04	k: 102	n:510000
Cons ci ratio: 7.686244e-06	ci left: 9.999928e-01	ci right 1	k: 510000	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KRTAP5-5   510000 perm   226 sec   (2254 perm/sec)   p_kst 1.960784e-06   p_cons 1   p_joint 2.000000e-04

Joint ci ratio: 3.843488e-01	ci left: 1.616796e-04	ci right 2.402208e-04	k: 103	n:520000
Cons ci ratio: 7.538433e-06	ci left: 9.999929e-01	ci right 1	k: 520000	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KRTAP5-5   520000 perm   233 sec   (2233 perm/sec)   p_kst 1.923077e-06   p_cons 1   p_joint 1.980769e-04

Joint ci ratio: 3.807056e-01	ci left: 1.620397e-04	ci right 2.398231e-04	k: 105	n:530000
Cons ci ratio: 7.396199e-06	ci left: 9.999930e-01	ci right 1	k: 530000	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KRTAP5-5   530000 perm   240 sec   (2213 perm/sec)   p_kst 1.886792e-06   p_cons 1   p_joint 1.981132e-04

Joint ci ratio: 3.959435e-01	ci left: 1.456699e-04	ci right 2.191286e-04	k: 97	n:540000
Cons ci ratio: 7.259232e-06	ci left: 9.999932e-01	ci right 1	k: 540000	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KRTAP5-5   540000 perm   246 sec   (2193 perm/sec)   p_kst 1.851852e-06   p_cons 1   p_joint 1.796296e-04

Joint ci ratio: 3.939390e-01	ci left: 1.446589e-04	ci right 2.171423e-04	k: 98	n:550000
Cons ci ratio: 7.127247e-06	ci left: 9.999933e-01	ci right 1	k: 550000	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KRTAP5-5   550000 perm   253 sec   (2174 perm/sec)   p_kst 1.818182e-06   p_cons 1   p_joint 1.781818e-04

Joint ci ratio: 4.064509e-01	ci left: 1.324395e-04	ci right 2.014781e-04	k: 92	n:560000
Cons ci ratio: 6.999975e-06	ci left: 9.999934e-01	ci right 1	k: 560000	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KRTAP5-5   560000 perm   260 sec   (2155 perm/sec)   p_kst 1.785714e-06   p_cons 1   p_joint 1.642857e-04

Joint ci ratio: 4.042834e-01	ci left: 1.316914e-04	ci right 1.998758e-04	k: 93	n:570000
Cons ci ratio: 6.877169e-06	ci left: 9.999935e-01	ci right 1	k: 570000	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KRTAP5-5   570000 perm   267 sec   (2135 perm/sec)   p_kst 1.754386e-06   p_cons 1   p_joint 1.631579e-04

Joint ci ratio: 4.824908e-01	ci left: 8.649349e-05	ci right 1.428389e-04	k: 65	n:580000
Cons ci ratio: 6.758597e-06	ci left: 9.999936e-01	ci right 1	k: 580000	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KRTAP5-5   580000 perm   274 sec   (2117 perm/sec)   p_kst 1.724138e-06   p_cons 1   p_joint 1.120690e-04

Joint ci ratio: 4.824912e-01	ci left: 8.502748e-05	ci right 1.404179e-04	k: 65	n:590000
Cons ci ratio: 6.644045e-06	ci left: 9.999937e-01	ci right 1	k: 590000	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KRTAP5-5   590000 perm   281 sec   (2098 perm/sec)   p_kst 1.694915e-06   p_cons 1   p_joint 1.101695e-04

Joint ci ratio: 4.824917e-01	ci left: 8.361034e-05	ci right 1.380777e-04	k: 65	n:600000
Cons ci ratio: 6.533312e-06	ci left: 9.999939e-01	ci right 1	k: 600000	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KRTAP5-5   600000 perm   288 sec   (2081 perm/sec)   p_kst 1.666667e-06   p_cons 1   p_joint 1.083333e-04

Joint ci ratio: 4.753429e-01	ci left: 8.512242e-05	ci right 1.394859e-04	k: 67	n:610000
Cons ci ratio: 6.426208e-06	ci left: 9.999940e-01	ci right 1	k: 610000	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KRTAP5-5   610000 perm   296 sec   (2063 perm/sec)   p_kst 1.639344e-06   p_cons 1   p_joint 1.098361e-04

Joint ci ratio: 4.718859e-01	ci left: 8.516978e-05	ci right 1.390402e-04	k: 68	n:620000
Cons ci ratio: 6.322560e-06	ci left: 9.999941e-01	ci right 1	k: 620000	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KRTAP5-5   620000 perm   303 sec   (2045 perm/sec)   p_kst 1.612903e-06   p_cons 1   p_joint 1.096774e-04

Joint ci ratio: 4.718863e-01	ci left: 8.381787e-05	ci right 1.368333e-04	k: 68	n:630000
Cons ci ratio: 6.222202e-06	ci left: 9.999941e-01	ci right 1	k: 630000	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KRTAP5-5   630000 perm   311 sec   (2028 perm/sec)   p_kst 1.587302e-06   p_cons 1   p_joint 1.079365e-04

Joint ci ratio: 4.685036e-01	ci left: 8.388550e-05	ci right 1.364417e-04	k: 69	n:640000
Cons ci ratio: 6.124981e-06	ci left: 9.999942e-01	ci right 1	k: 640000	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KRTAP5-5   640000 perm   318 sec   (2011 perm/sec)   p_kst 1.562500e-06   p_cons 1   p_joint 1.078125e-04

Joint ci ratio: 4.685040e-01	ci left: 8.259494e-05	ci right 1.343426e-04	k: 69	n:650000
Cons ci ratio: 6.030751e-06	ci left: 9.999943e-01	ci right 1	k: 650000	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KRTAP5-5   650000 perm   326 sec   (1994 perm/sec)   p_kst 1.538462e-06   p_cons 1   p_joint 1.061538e-04

Joint ci ratio: 4.685044e-01	ci left: 8.134349e-05	ci right 1.323071e-04	k: 69	n:660000
Cons ci ratio: 5.939376e-06	ci left: 9.999944e-01	ci right 1	k: 660000	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KRTAP5-5   660000 perm   334 sec   (1977 perm/sec)   p_kst 1.515152e-06   p_cons 1   p_joint 1.045455e-04

Joint ci ratio: 4.685048e-01	ci left: 8.012939e-05	ci right 1.303324e-04	k: 69	n:670000
Cons ci ratio: 5.850729e-06	ci left: 9.999945e-01	ci right 1	k: 670000	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KRTAP5-5   670000 perm   342 sec   (1961 perm/sec)   p_kst 1.492537e-06   p_cons 1   p_joint 1.029851e-04

Joint ci ratio: 4.788803e-01	ci left: 7.506606e-05	ci right 1.234810e-04	k: 66	n:680000
Cons ci ratio: 5.764689e-06	ci left: 9.999946e-01	ci right 1	k: 680000	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KRTAP5-5   680000 perm   350 sec   (1945 perm/sec)   p_kst 1.470588e-06   p_cons 1   p_joint 9.705882e-05

Joint ci ratio: 4.938507e-01	ci left: 6.889204e-05	ci right 1.151887e-04	k: 62	n:690000
Cons ci ratio: 5.681143e-06	ci left: 9.999947e-01	ci right 1	k: 690000	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KRTAP5-5   690000 perm   358 sec   (1930 perm/sec)   p_kst 1.449275e-06   p_cons 1   p_joint 8.985507e-05

Joint ci ratio: 4.861932e-01	ci left: 7.041183e-05	ci right 1.167508e-04	k: 64	n:700000
Cons ci ratio: 5.599984e-06	ci left: 9.999947e-01	ci right 1	k: 700000	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KRTAP5-5   700000 perm   366 sec   (1914 perm/sec)   p_kst 1.428571e-06   p_cons 1   p_joint 9.142857e-05

Joint ci ratio: 4.861936e-01	ci left: 6.942010e-05	ci right 1.151064e-04	k: 64	n:710000
Cons ci ratio: 5.521111e-06	ci left: 9.999948e-01	ci right 1	k: 710000	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KRTAP5-5   710000 perm   374 sec   (1899 perm/sec)   p_kst 1.408451e-06   p_cons 1   p_joint 9.014085e-05

Joint ci ratio: 4.861939e-01	ci left: 6.845593e-05	ci right 1.135077e-04	k: 64	n:720000
Cons ci ratio: 5.444429e-06	ci left: 9.999949e-01	ci right 1	k: 720000	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KRTAP5-5   720000 perm   382 sec   (1885 perm/sec)   p_kst 1.388889e-06   p_cons 1   p_joint 8.888889e-05

Joint ci ratio: 4.861942e-01	ci left: 6.751817e-05	ci right 1.119528e-04	k: 64	n:730000
Cons ci ratio: 5.369848e-06	ci left: 9.999949e-01	ci right 1	k: 730000	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KRTAP5-5   730000 perm   390 sec   (1870 perm/sec)   p_kst 1.369863e-06   p_cons 1   p_joint 8.767123e-05

Joint ci ratio: 4.861945e-01	ci left: 6.660575e-05	ci right 1.104400e-04	k: 64	n:740000
Cons ci ratio: 5.297283e-06	ci left: 9.999950e-01	ci right 1	k: 740000	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KRTAP5-5   740000 perm   399 sec   (1856 perm/sec)   p_kst 1.351351e-06   p_cons 1   p_joint 8.648649e-05

Joint ci ratio: 4.938525e-01	ci left: 6.338063e-05	ci right 1.059737e-04	k: 62	n:750000
Cons ci ratio: 5.226653e-06	ci left: 9.999951e-01	ci right 1	k: 750000	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KRTAP5-5   750000 perm   407 sec   (1842 perm/sec)   p_kst 1.333333e-06   p_cons 1   p_joint 8.266667e-05

Joint ci ratio: 4.861950e-01	ci left: 6.485295e-05	ci right 1.075337e-04	k: 64	n:760000
Cons ci ratio: 5.157881e-06	ci left: 9.999951e-01	ci right 1	k: 760000	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KRTAP5-5   760000 perm   416 sec   (1829 perm/sec)   p_kst 1.315789e-06   p_cons 1   p_joint 8.421053e-05

Joint ci ratio: 4.824977e-01	ci left: 6.515075e-05	ci right 1.075933e-04	k: 65	n:770000
Cons ci ratio: 5.090896e-06	ci left: 9.999952e-01	ci right 1	k: 770000	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KRTAP5-5   770000 perm   424 sec   (1815 perm/sec)   p_kst 1.298701e-06   p_cons 1   p_joint 8.441558e-05

Joint ci ratio: 4.824979e-01	ci left: 6.431548e-05	ci right 1.062140e-04	k: 65	n:780000
Cons ci ratio: 5.025628e-06	ci left: 9.999953e-01	ci right 1	k: 780000	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KRTAP5-5   780000 perm   433 sec   (1801 perm/sec)   p_kst 1.282051e-06   p_cons 1   p_joint 8.333333e-05

Joint ci ratio: 4.824982e-01	ci left: 6.350135e-05	ci right 1.048695e-04	k: 65	n:790000
Cons ci ratio: 4.962013e-06	ci left: 9.999953e-01	ci right 1	k: 790000	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KRTAP5-5   790000 perm   442 sec   (1788 perm/sec)   p_kst 1.265823e-06   p_cons 1   p_joint 8.227848e-05

Joint ci ratio: 4.861961e-01	ci left: 6.161028e-05	ci right 1.021571e-04	k: 64	n:800000
Cons ci ratio: 4.899988e-06	ci left: 9.999954e-01	ci right 1	k: 800000	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KRTAP5-5   800000 perm   451 sec   (1775 perm/sec)   p_kst 1.250000e-06   p_cons 1   p_joint 8.000000e-05

Joint ci ratio: 4.861964e-01	ci left: 6.084965e-05	ci right 1.008959e-04	k: 64	n:810000
Cons ci ratio: 4.839494e-06	ci left: 9.999954e-01	ci right 1	k: 810000	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KRTAP5-5   810000 perm   460 sec   (1762 perm/sec)   p_kst 1.234568e-06   p_cons 1   p_joint 7.901235e-05

Joint ci ratio: 4.824989e-01	ci left: 6.117811e-05	ci right 1.010328e-04	k: 65	n:820000
Cons ci ratio: 4.780476e-06	ci left: 9.999955e-01	ci right 1	k: 820000	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KRTAP5-5   820000 perm   469 sec   (1750 perm/sec)   p_kst 1.219512e-06   p_cons 1   p_joint 7.926829e-05

Joint ci ratio: 4.824992e-01	ci left: 6.044102e-05	ci right 9.981560e-05	k: 65	n:830000
Cons ci ratio: 4.722880e-06	ci left: 9.999956e-01	ci right 1	k: 830000	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KRTAP5-5   830000 perm   478 sec   (1738 perm/sec)   p_kst 1.204819e-06   p_cons 1   p_joint 7.831325e-05

Joint ci ratio: 4.788848e-01	ci left: 6.076764e-05	ci right 9.996105e-05	k: 66	n:840000
Cons ci ratio: 4.666656e-06	ci left: 9.999956e-01	ci right 1	k: 840000	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KRTAP5-5   840000 perm   487 sec   (1726 perm/sec)   p_kst 1.190476e-06   p_cons 1   p_joint 7.857143e-05

Joint ci ratio: 4.788851e-01	ci left: 6.005272e-05	ci right 9.878505e-05	k: 66	n:850000
Cons ci ratio: 4.611754e-06	ci left: 9.999957e-01	ci right 1	k: 850000	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KRTAP5-5   850000 perm   496 sec   (1713 perm/sec)   p_kst 1.176471e-06   p_cons 1   p_joint 7.764706e-05

Joint ci ratio: 4.824998e-01	ci left: 5.833259e-05	ci right 9.633369e-05	k: 65	n:860000
Cons ci ratio: 4.558129e-06	ci left: 9.999957e-01	ci right 1	k: 860000	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KRTAP5-5   860000 perm   505 sec   (1701 perm/sec)   p_kst 1.162791e-06   p_cons 1   p_joint 7.558140e-05

Joint ci ratio: 4.753510e-01	ci left: 5.968333e-05	ci right 9.780086e-05	k: 67	n:870000
Cons ci ratio: 4.505737e-06	ci left: 9.999958e-01	ci right 1	k: 870000	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KRTAP5-5   870000 perm   515 sec   (1690 perm/sec)   p_kst 1.149425e-06   p_cons 1   p_joint 7.701149e-05

Joint ci ratio: 4.753512e-01	ci left: 5.900511e-05	ci right 9.668950e-05	k: 67	n:880000
Cons ci ratio: 4.454535e-06	ci left: 9.999958e-01	ci right 1	k: 880000	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KRTAP5-5   880000 perm   524 sec   (1678 perm/sec)   p_kst 1.136364e-06   p_cons 1   p_joint 7.613636e-05

Joint ci ratio: 4.753514e-01	ci left: 5.834212e-05	ci right 9.560311e-05	k: 67	n:890000
Cons ci ratio: 4.404484e-06	ci left: 9.999959e-01	ci right 1	k: 890000	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KRTAP5-5   890000 perm   534 sec   (1666 perm/sec)   p_kst 1.123596e-06   p_cons 1   p_joint 7.528090e-05

Joint ci ratio: 4.753516e-01	ci left: 5.769387e-05	ci right 9.454086e-05	k: 67	n:900000
Cons ci ratio: 4.355546e-06	ci left: 9.999959e-01	ci right 1	k: 900000	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KRTAP5-5   900000 perm   544 sec   (1655 perm/sec)   p_kst 1.111111e-06   p_cons 1   p_joint 7.444444e-05

Joint ci ratio: 4.718944e-01	ci left: 5.802755e-05	ci right 9.473114e-05	k: 68	n:910000
Cons ci ratio: 4.307683e-06	ci left: 9.999959e-01	ci right 1	k: 910000	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KRTAP5-5   910000 perm   554 sec   (1644 perm/sec)   p_kst 1.098901e-06   p_cons 1   p_joint 7.472527e-05

Joint ci ratio: 4.718946e-01	ci left: 5.739681e-05	ci right 9.370147e-05	k: 68	n:920000
Cons ci ratio: 4.260860e-06	ci left: 9.999960e-01	ci right 1	k: 920000	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KRTAP5-5   920000 perm   564 sec   (1633 perm/sec)   p_kst 1.086957e-06   p_cons 1   p_joint 7.391304e-05

Joint ci ratio: 4.685117e-01	ci left: 5.772745e-05	ci right 9.389576e-05	k: 69	n:930000
Cons ci ratio: 4.215045e-06	ci left: 9.999960e-01	ci right 1	k: 930000	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KRTAP5-5   930000 perm   574 sec   (1621 perm/sec)   p_kst 1.075269e-06   p_cons 1   p_joint 7.419355e-05

Joint ci ratio: 4.685119e-01	ci left: 5.711333e-05	ci right 9.289688e-05	k: 69	n:940000
Cons ci ratio: 4.170204e-06	ci left: 9.999961e-01	ci right 1	k: 940000	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KRTAP5-5   940000 perm   584 sec   (1610 perm/sec)   p_kst 1.063830e-06   p_cons 1   p_joint 7.340426e-05

Joint ci ratio: 4.685121e-01	ci left: 5.651213e-05	ci right 9.191903e-05	k: 69	n:950000
Cons ci ratio: 4.126307e-06	ci left: 9.999961e-01	ci right 1	k: 950000	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KRTAP5-5   950000 perm   594 sec   (1600 perm/sec)   p_kst 1.052632e-06   p_cons 1   p_joint 7.263158e-05

Joint ci ratio: 3.771808e-01	ci left: 9.134367e-05	ci right 1.346844e-04	k: 107	n:960000
Cons ci ratio: 4.083325e-06	ci left: 9.999962e-01	ci right 1	k: 960000	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KRTAP5-5   960000 perm   604 sec   (1589 perm/sec)   p_kst 1.041667e-06   p_cons 1   p_joint 1.114583e-04

Joint ci ratio: 3.900341e-01	ci left: 8.388117e-05	ci right 1.253870e-04	k: 100	n:970000
Cons ci ratio: 4.041229e-06	ci left: 9.999962e-01	ci right 1	k: 970000	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KRTAP5-5   970000 perm   614 sec   (1579 perm/sec)   p_kst 1.030928e-06   p_cons 1   p_joint 1.030928e-04

Joint ci ratio: 3.843670e-01	ci left: 8.578848e-05	ci right 1.274654e-04	k: 103	n:980000
Cons ci ratio: 3.999992e-06	ci left: 9.999962e-01	ci right 1	k: 980000	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KRTAP5-5   980000 perm   625 sec   (1569 perm/sec)   p_kst 1.020408e-06   p_cons 1   p_joint 1.051020e-04

Joint ci ratio: 3.825323e-01	ci left: 8.583466e-05	ci right 1.272849e-04	k: 104	n:990000
Cons ci ratio: 3.959588e-06	ci left: 9.999963e-01	ci right 1	k: 990000	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KRTAP5-5   990000 perm   635 sec   (1558 perm/sec)   p_kst 1.010101e-06   p_cons 1   p_joint 1.050505e-04

Joint ci ratio: 3.807237e-01	ci left: 8.588038e-05	ci right 1.271075e-04	k: 105	n:1000000
Cons ci ratio: 3.919992e-06	ci left: 9.999963e-01	ci right 1	k: 1000000	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KRTAP5-5   1000000 perm   646 sec   (1549 perm/sec)   p_kst 1.000000e-06   p_cons 1   p_joint 1.050000e-04

Joint ci ratio: 3.754475e-01	ci left: 8.771812e-05	ci right 1.291003e-04	k: 108	n:1010000
Cons ci ratio: 3.881180e-06	ci left: 9.999963e-01	ci right 1	k: 1010000	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KRTAP5-5   1010000 perm   656 sec   (1539 perm/sec)   p_kst 9.900990e-07   p_cons 1   p_joint 1.069307e-04

Joint ci ratio: 3.754477e-01	ci left: 8.685813e-05	ci right 1.278346e-04	k: 108	n:1020000
Cons ci ratio: 3.843130e-06	ci left: 9.999964e-01	ci right 1	k: 1020000	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KRTAP5-5   1020000 perm   667 sec   (1529 perm/sec)   p_kst 9.803922e-07   p_cons 1   p_joint 1.058824e-04

Joint ci ratio: 3.737372e-01	ci left: 8.689432e-05	ci right 1.276553e-04	k: 109	n:1030000
Cons ci ratio: 3.805818e-06	ci left: 9.999964e-01	ci right 1	k: 1030000	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KRTAP5-5   1030000 perm   678 sec   (1520 perm/sec)   p_kst 9.708738e-07   p_cons 1   p_joint 1.058252e-04

Joint ci ratio: 3.737374e-01	ci left: 8.605879e-05	ci right 1.264279e-04	k: 109	n:1040000
Cons ci ratio: 3.769224e-06	ci left: 9.999965e-01	ci right 1	k: 1040000	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KRTAP5-5   1040000 perm   689 sec   (1510 perm/sec)   p_kst 9.615385e-07   p_cons 1   p_joint 1.048077e-04

Joint ci ratio: 3.737376e-01	ci left: 8.523917e-05	ci right 1.252238e-04	k: 109	n:1050000
Cons ci ratio: 3.733326e-06	ci left: 9.999965e-01	ci right 1	k: 1050000	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KRTAP5-5   1050000 perm   700 sec   (1501 perm/sec)   p_kst 9.523810e-07   p_cons 1   p_joint 1.038095e-04

Joint ci ratio: 3.737378e-01	ci left: 8.443502e-05	ci right 1.240425e-04	k: 109	n:1060000
Cons ci ratio: 3.698106e-06	ci left: 9.999965e-01	ci right 1	k: 1060000	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KRTAP5-5   1060000 perm   711 sec   (1491 perm/sec)   p_kst 9.433962e-07   p_cons 1   p_joint 1.028302e-04

Joint ci ratio: 3.703856e-01	ci left: 8.534030e-05	ci right 1.249264e-04	k: 111	n:1070000
Cons ci ratio: 3.663545e-06	ci left: 9.999966e-01	ci right 1	k: 1070000	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KRTAP5-5   1070000 perm   722 sec   (1482 perm/sec)   p_kst 9.345794e-07   p_cons 1   p_joint 1.037383e-04

Joint ci ratio: 3.771831e-01	ci left: 8.119428e-05	ci right 1.197196e-04	k: 107	n:1080000
Cons ci ratio: 3.629623e-06	ci left: 9.999966e-01	ci right 1	k: 1080000	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KRTAP5-5   1080000 perm   733 sec   (1474 perm/sec)   p_kst 9.259259e-07   p_cons 1   p_joint 9.907407e-05

Joint ci ratio: 3.737383e-01	ci left: 8.211110e-05	ci right 1.206285e-04	k: 109	n:1090000
Cons ci ratio: 3.596324e-06	ci left: 9.999966e-01	ci right 1	k: 1090000	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KRTAP5-5   1090000 perm   744 sec   (1465 perm/sec)   p_kst 9.174312e-07   p_cons 1   p_joint 1.000000e-04

Joint ci ratio: 3.720510e-01	ci left: 8.218853e-05	ci right 1.205258e-04	k: 110	n:1100000
Cons ci ratio: 3.563630e-06	ci left: 9.999966e-01	ci right 1	k: 1100000	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KRTAP5-5   1100000 perm   755 sec   (1456 perm/sec)   p_kst 9.090909e-07   p_cons 1   p_joint 1.000000e-04

Joint ci ratio: 3.862310e-01	ci left: 7.492746e-05	ci right 1.115494e-04	k: 102	n:1110000
Cons ci ratio: 3.531525e-06	ci left: 9.999967e-01	ci right 1	k: 1110000	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KRTAP5-5   1110000 perm   767 sec   (1448 perm/sec)   p_kst 9.009009e-07   p_cons 1   p_joint 9.189189e-05

Joint ci ratio: 3.825347e-01	ci left: 7.587163e-05	ci right 1.125109e-04	k: 104	n:1120000
Cons ci ratio: 3.499994e-06	ci left: 9.999967e-01	ci right 1	k: 1120000	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KRTAP5-5   1120000 perm   778 sec   (1439 perm/sec)   p_kst 8.928571e-07   p_cons 1   p_joint 9.285714e-05

Joint ci ratio: 3.754496e-01	ci left: 7.840285e-05	ci right 1.153906e-04	k: 108	n:1130000
Cons ci ratio: 3.469020e-06	ci left: 9.999967e-01	ci right 1	k: 1130000	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KRTAP5-5   1130000 perm   790 sec   (1431 perm/sec)   p_kst 8.849558e-07   p_cons 1   p_joint 9.557522e-05

Joint ci ratio: 3.737391e-01	ci left: 7.850971e-05	ci right 1.153378e-04	k: 109	n:1140000
Cons ci ratio: 3.438590e-06	ci left: 9.999968e-01	ci right 1	k: 1140000	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KRTAP5-5   1140000 perm   802 sec   (1422 perm/sec)   p_kst 8.771930e-07   p_cons 1   p_joint 9.561404e-05

Joint ci ratio: 3.720518e-01	ci left: 7.861509e-05	ci right 1.152856e-04	k: 110	n:1150000
Cons ci ratio: 3.408690e-06	ci left: 9.999968e-01	ci right 1	k: 1150000	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KRTAP5-5   1150000 perm   814 sec   (1413 perm/sec)   p_kst 8.695652e-07   p_cons 1   p_joint 9.565217e-05

Joint ci ratio: 3.703871e-01	ci left: 7.871902e-05	ci right 1.152339e-04	k: 111	n:1160000
Cons ci ratio: 3.379305e-06	ci left: 9.999968e-01	ci right 1	k: 1160000	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KRTAP5-5   1160000 perm   826 sec   (1405 perm/sec)   p_kst 8.620690e-07   p_cons 1   p_joint 9.568966e-05

Joint ci ratio: 3.703873e-01	ci left: 7.804620e-05	ci right 1.142490e-04	k: 111	n:1170000
Cons ci ratio: 3.350422e-06	ci left: 9.999968e-01	ci right 1	k: 1170000	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KRTAP5-5   1170000 perm   838 sec   (1397 perm/sec)   p_kst 8.547009e-07   p_cons 1   p_joint 9.487179e-05

Joint ci ratio: 3.687448e-01	ci left: 7.815355e-05	ci right 1.142066e-04	k: 112	n:1180000
Cons ci ratio: 3.322028e-06	ci left: 9.999969e-01	ci right 1	k: 1180000	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KRTAP5-5   1180000 perm   850 sec   (1389 perm/sec)   p_kst 8.474576e-07   p_cons 1   p_joint 9.491525e-05

Joint ci ratio: 3.655241e-01	ci left: 7.902243e-05	ci right 1.150819e-04	k: 114	n:1190000
Cons ci ratio: 3.294112e-06	ci left: 9.999969e-01	ci right 1	k: 1190000	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KRTAP5-5   1190000 perm   862 sec   (1381 perm/sec)   p_kst 8.403361e-07   p_cons 1   p_joint 9.579832e-05

Joint ci ratio: 3.655242e-01	ci left: 7.836390e-05	ci right 1.141229e-04	k: 114	n:1200000
Cons ci ratio: 3.266661e-06	ci left: 9.999969e-01	ci right 1	k: 1200000	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KRTAP5-5   1200000 perm   874 sec   (1373 perm/sec)   p_kst 8.333333e-07   p_cons 1   p_joint 9.500000e-05

Joint ci ratio: 3.655244e-01	ci left: 7.771626e-05	ci right 1.131798e-04	k: 114	n:1210000
Cons ci ratio: 3.239664e-06	ci left: 9.999970e-01	ci right 1	k: 1210000	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KRTAP5-5   1210000 perm   886 sec   (1366 perm/sec)   p_kst 8.264463e-07   p_cons 1   p_joint 9.421488e-05

Joint ci ratio: 3.639454e-01	ci left: 7.782380e-05	ci right 1.131465e-04	k: 115	n:1220000
Cons ci ratio: 3.213109e-06	ci left: 9.999970e-01	ci right 1	k: 1220000	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KRTAP5-5   1220000 perm   900 sec   (1356 perm/sec)   p_kst 8.196721e-07   p_cons 1   p_joint 9.426230e-05

Joint ci ratio: 3.623867e-01	ci left: 7.792991e-05	ci right 1.131135e-04	k: 116	n:1230000
Cons ci ratio: 3.186987e-06	ci left: 9.999970e-01	ci right 1	k: 1230000	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KRTAP5-5   1230000 perm   912 sec   (1348 perm/sec)   p_kst 8.130081e-07   p_cons 1   p_joint 9.430894e-05

Joint ci ratio: 3.623869e-01	ci left: 7.730144e-05	ci right 1.122013e-04	k: 116	n:1240000
Cons ci ratio: 3.161285e-06	ci left: 9.999970e-01	ci right 1	k: 1240000	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KRTAP5-5   1240000 perm   925 sec   (1340 perm/sec)   p_kst 8.064516e-07   p_cons 1   p_joint 9.354839e-05

Joint ci ratio: 3.939591e-01	ci left: 6.364935e-05	ci right 9.554367e-05	k: 98	n:1250000
Cons ci ratio: 3.135995e-06	ci left: 9.999970e-01	ci right 1	k: 1250000	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KRTAP5-5   1250000 perm   938 sec   (1333 perm/sec)   p_kst 8.000000e-07   p_cons 1   p_joint 7.840000e-05

Joint ci ratio: 3.939592e-01	ci left: 6.314420e-05	ci right 9.478539e-05	k: 98	n:1260000
Cons ci ratio: 3.111106e-06	ci left: 9.999971e-01	ci right 1	k: 1260000	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KRTAP5-5   1260000 perm   950 sec   (1326 perm/sec)   p_kst 7.936508e-07   p_cons 1   p_joint 7.777778e-05

Joint ci ratio: 3.939593e-01	ci left: 6.264699e-05	ci right 9.403906e-05	k: 98	n:1270000
Cons ci ratio: 3.086609e-06	ci left: 9.999971e-01	ci right 1	k: 1270000	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KRTAP5-5   1270000 perm   963 sec   (1319 perm/sec)   p_kst 7.874016e-07   p_cons 1   p_joint 7.716535e-05

Joint ci ratio: 3.919845e-01	ci left: 6.286161e-05	ci right 9.416245e-05	k: 99	n:1280000
Cons ci ratio: 3.062495e-06	ci left: 9.999971e-01	ci right 1	k: 1280000	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KRTAP5-5   1280000 perm   976 sec   (1312 perm/sec)   p_kst 7.812500e-07   p_cons 1   p_joint 7.734375e-05

Joint ci ratio: 3.919847e-01	ci left: 6.237431e-05	ci right 9.343251e-05	k: 99	n:1290000
Cons ci ratio: 3.038755e-06	ci left: 9.999971e-01	ci right 1	k: 1290000	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KRTAP5-5   1290000 perm   989 sec   (1304 perm/sec)   p_kst 7.751938e-07   p_cons 1   p_joint 7.674419e-05

Joint ci ratio: 3.900393e-01	ci left: 6.258811e-05	ci right 9.355829e-05	k: 100	n:1300000
Cons ci ratio: 3.015380e-06	ci left: 9.999972e-01	ci right 1	k: 1300000	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KRTAP5-5   1300000 perm   1002 sec   (1298 perm/sec)   p_kst 7.692308e-07   p_cons 1   p_joint 7.692308e-05

Joint ci ratio: 3.825374e-01	ci left: 6.486727e-05	ci right 9.619263e-05	k: 104	n:1310000
Cons ci ratio: 2.992362e-06	ci left: 9.999972e-01	ci right 1	k: 1310000	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KRTAP5-5   1310000 perm   1015 sec   (1291 perm/sec)   p_kst 7.633588e-07   p_cons 1   p_joint 7.938931e-05

Joint ci ratio: 3.959649e-01	ci left: 5.959165e-05	ci right 8.964456e-05	k: 97	n:1320000
Cons ci ratio: 2.969692e-06	ci left: 9.999972e-01	ci right 1	k: 1320000	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KRTAP5-5   1320000 perm   1028 sec   (1284 perm/sec)   p_kst 7.575758e-07   p_cons 1   p_joint 7.348485e-05

Joint ci ratio: 3.900396e-01	ci left: 6.117634e-05	ci right 9.144797e-05	k: 100	n:1330000
Cons ci ratio: 2.947364e-06	ci left: 9.999972e-01	ci right 1	k: 1330000	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KRTAP5-5   1330000 perm   1041 sec   (1277 perm/sec)   p_kst 7.518797e-07   p_cons 1   p_joint 7.518797e-05

Joint ci ratio: 3.843726e-01	ci left: 6.274067e-05	ci right 9.322122e-05	k: 103	n:1340000
Cons ci ratio: 2.925369e-06	ci left: 9.999972e-01	ci right 1	k: 1340000	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KRTAP5-5   1340000 perm   1055 sec   (1270 perm/sec)   p_kst 7.462687e-07   p_cons 1   p_joint 7.686567e-05

Joint ci ratio: 3.825378e-01	ci left: 6.294526e-05	ci right 9.334250e-05	k: 104	n:1350000
Cons ci ratio: 2.903699e-06	ci left: 9.999973e-01	ci right 1	k: 1350000	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KRTAP5-5   1350000 perm   1068 sec   (1264 perm/sec)   p_kst 7.407407e-07   p_cons 1   p_joint 7.703704e-05

Joint ci ratio: 3.825379e-01	ci left: 6.248243e-05	ci right 9.265617e-05	k: 104	n:1360000
Cons ci ratio: 2.882349e-06	ci left: 9.999973e-01	ci right 1	k: 1360000	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KRTAP5-5   1360000 perm   1082 sec   (1257 perm/sec)   p_kst 7.352941e-07   p_cons 1   p_joint 7.647059e-05

Joint ci ratio: 3.807292e-01	ci left: 6.268625e-05	ci right 9.277947e-05	k: 105	n:1370000
Cons ci ratio: 2.861310e-06	ci left: 9.999973e-01	ci right 1	k: 1370000	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KRTAP5-5   1370000 perm   1096 sec   (1251 perm/sec)   p_kst 7.299270e-07   p_cons 1   p_joint 7.664234e-05

Joint ci ratio: 3.789459e-01	ci left: 6.288745e-05	ci right 9.290066e-05	k: 106	n:1380000
Cons ci ratio: 2.840576e-06	ci left: 9.999973e-01	ci right 1	k: 1380000	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KRTAP5-5   1380000 perm   1109 sec   (1244 perm/sec)   p_kst 7.246377e-07   p_cons 1   p_joint 7.681159e-05

Joint ci ratio: 3.771874e-01	ci left: 6.308609e-05	ci right 9.301979e-05	k: 107	n:1390000
Cons ci ratio: 2.820140e-06	ci left: 9.999973e-01	ci right 1	k: 1390000	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KRTAP5-5   1390000 perm   1123 sec   (1238 perm/sec)   p_kst 7.194245e-07   p_cons 1   p_joint 7.697842e-05

Joint ci ratio: 3.862347e-01	ci left: 5.940667e-05	ci right 8.844291e-05	k: 102	n:1400000
Cons ci ratio: 2.799996e-06	ci left: 9.999974e-01	ci right 1	k: 1400000	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KRTAP5-5   1400000 perm   1137 sec   (1232 perm/sec)   p_kst 7.142857e-07   p_cons 1   p_joint 7.285714e-05

Joint ci ratio: 3.862348e-01	ci left: 5.898534e-05	ci right 8.781566e-05	k: 102	n:1410000
Cons ci ratio: 2.780138e-06	ci left: 9.999974e-01	ci right 1	k: 1410000	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KRTAP5-5   1410000 perm   1150 sec   (1226 perm/sec)   p_kst 7.092199e-07   p_cons 1   p_joint 7.234043e-05

Joint ci ratio: 3.843734e-01	ci left: 5.920596e-05	ci right 8.796936e-05	k: 103	n:1420000
Cons ci ratio: 2.760559e-06	ci left: 9.999974e-01	ci right 1	k: 1420000	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KRTAP5-5   1420000 perm   1164 sec   (1219 perm/sec)   p_kst 7.042254e-07   p_cons 1   p_joint 7.253521e-05

Joint ci ratio: 3.919862e-01	ci left: 5.626770e-05	ci right 8.428534e-05	k: 99	n:1430000
Cons ci ratio: 2.741255e-06	ci left: 9.999974e-01	ci right 1	k: 1430000	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KRTAP5-5   1430000 perm   1179 sec   (1213 perm/sec)   p_kst 6.993007e-07   p_cons 1   p_joint 6.923077e-05

Joint ci ratio: 3.900408e-01	ci left: 5.650312e-05	ci right 8.446242e-05	k: 100	n:1440000
Cons ci ratio: 2.722218e-06	ci left: 9.999974e-01	ci right 1	k: 1440000	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KRTAP5-5   1440000 perm   1193 sec   (1208 perm/sec)   p_kst 6.944444e-07   p_cons 1   p_joint 6.944444e-05

Joint ci ratio: 3.881241e-01	ci left: 5.673563e-05	ci right 8.463671e-05	k: 101	n:1450000
Cons ci ratio: 2.703445e-06	ci left: 9.999975e-01	ci right 1	k: 1450000	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KRTAP5-5   1450000 perm   1207 sec   (1202 perm/sec)   p_kst 6.896552e-07   p_cons 1   p_joint 6.965517e-05

Joint ci ratio: 3.881241e-01	ci left: 5.634703e-05	ci right 8.405702e-05	k: 101	n:1460000
Cons ci ratio: 2.684928e-06	ci left: 9.999975e-01	ci right 1	k: 1460000	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KRTAP5-5   1460000 perm   1221 sec   (1196 perm/sec)   p_kst 6.849315e-07   p_cons 1   p_joint 6.917808e-05

Joint ci ratio: 3.862354e-01	ci left: 5.657777e-05	ci right 8.423138e-05	k: 102	n:1470000
Cons ci ratio: 2.666663e-06	ci left: 9.999975e-01	ci right 1	k: 1470000	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KRTAP5-5   1470000 perm   1236 sec   (1190 perm/sec)   p_kst 6.802721e-07   p_cons 1   p_joint 6.938776e-05

Joint ci ratio: 3.843740e-01	ci left: 5.680571e-05	ci right 8.440306e-05	k: 103	n:1480000
Cons ci ratio: 2.648645e-06	ci left: 9.999975e-01	ci right 1	k: 1480000	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KRTAP5-5   1480000 perm   1250 sec   (1184 perm/sec)   p_kst 6.756757e-07   p_cons 1   p_joint 6.959459e-05

Joint ci ratio: 3.843741e-01	ci left: 5.642446e-05	ci right 8.383660e-05	k: 103	n:1490000
Cons ci ratio: 2.630869e-06	ci left: 9.999975e-01	ci right 1	k: 1490000	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KRTAP5-5   1490000 perm   1265 sec   (1178 perm/sec)   p_kst 6.711409e-07   p_cons 1   p_joint 6.912752e-05

Joint ci ratio: 3.825393e-01	ci left: 5.665070e-05	ci right 8.400832e-05	k: 104	n:1500000
Cons ci ratio: 2.613330e-06	ci left: 9.999975e-01	ci right 1	k: 1500000	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KRTAP5-5   1500000 perm   1280 sec   (1172 perm/sec)   p_kst 6.666667e-07   p_cons 1   p_joint 6.933333e-05

Joint ci ratio: 3.825394e-01	ci left: 5.627553e-05	ci right 8.345198e-05	k: 104	n:1510000
Cons ci ratio: 2.596023e-06	ci left: 9.999976e-01	ci right 1	k: 1510000	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KRTAP5-5   1510000 perm   1295 sec   (1166 perm/sec)   p_kst 6.622517e-07   p_cons 1   p_joint 6.887417e-05

Joint ci ratio: 3.807307e-01	ci left: 5.650007e-05	ci right 8.362367e-05	k: 105	n:1520000
Cons ci ratio: 2.578944e-06	ci left: 9.999976e-01	ci right 1	k: 1520000	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KRTAP5-5   1520000 perm   1309 sec   (1161 perm/sec)   p_kst 6.578947e-07   p_cons 1   p_joint 6.907895e-05

Joint ci ratio: 3.789473e-01	ci left: 5.672198e-05	ci right 8.379282e-05	k: 106	n:1530000
Cons ci ratio: 2.562088e-06	ci left: 9.999976e-01	ci right 1	k: 1530000	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KRTAP5-5   1530000 perm   1324 sec   (1155 perm/sec)   p_kst 6.535948e-07   p_cons 1   p_joint 6.928105e-05

Joint ci ratio: 3.789474e-01	ci left: 5.635365e-05	ci right 8.324872e-05	k: 106	n:1540000
Cons ci ratio: 2.545451e-06	ci left: 9.999976e-01	ci right 1	k: 1540000	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KRTAP5-5   1540000 perm   1339 sec   (1150 perm/sec)   p_kst 6.493506e-07   p_cons 1   p_joint 6.883117e-05

Joint ci ratio: 3.789475e-01	ci left: 5.599008e-05	ci right 8.271163e-05	k: 106	n:1550000
Cons ci ratio: 2.529029e-06	ci left: 9.999976e-01	ci right 1	k: 1550000	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KRTAP5-5   1550000 perm   1355 sec   (1144 perm/sec)   p_kst 6.451613e-07   p_cons 1   p_joint 6.838710e-05

Joint ci ratio: 3.771890e-01	ci left: 5.621128e-05	ci right 8.288309e-05	k: 107	n:1560000
Cons ci ratio: 2.512817e-06	ci left: 9.999976e-01	ci right 1	k: 1560000	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KRTAP5-5   1560000 perm   1370 sec   (1139 perm/sec)   p_kst 6.410256e-07   p_cons 1   p_joint 6.858974e-05

Joint ci ratio: 3.737441e-01	ci left: 5.700692e-05	ci right 8.374873e-05	k: 109	n:1570000
Cons ci ratio: 2.496812e-06	ci left: 9.999977e-01	ci right 1	k: 1570000	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KRTAP5-5   1570000 perm   1385 sec   (1134 perm/sec)   p_kst 6.369427e-07   p_cons 1   p_joint 6.942675e-05

Joint ci ratio: 3.720567e-01	ci left: 5.721972e-05	ci right 8.391063e-05	k: 110	n:1580000
Cons ci ratio: 2.481010e-06	ci left: 9.999977e-01	ci right 1	k: 1580000	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KRTAP5-5   1580000 perm   1400 sec   (1128 perm/sec)   p_kst 6.329114e-07   p_cons 1   p_joint 6.962025e-05

Joint ci ratio: 3.720568e-01	ci left: 5.685984e-05	ci right 8.338290e-05	k: 110	n:1590000
Cons ci ratio: 2.465406e-06	ci left: 9.999977e-01	ci right 1	k: 1590000	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KRTAP5-5   1590000 perm   1416 sec   (1123 perm/sec)   p_kst 6.289308e-07   p_cons 1   p_joint 6.918239e-05

Joint ci ratio: 3.703921e-01	ci left: 5.707116e-05	ci right 8.354480e-05	k: 111	n:1600000
Cons ci ratio: 2.449997e-06	ci left: 9.999977e-01	ci right 1	k: 1600000	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KRTAP5-5   1600000 perm   1431 sec   (1118 perm/sec)   p_kst 6.250000e-07   p_cons 1   p_joint 6.937500e-05

Joint ci ratio: 3.703922e-01	ci left: 5.671668e-05	ci right 8.302590e-05	k: 111	n:1610000
Cons ci ratio: 2.434780e-06	ci left: 9.999977e-01	ci right 1	k: 1610000	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KRTAP5-5   1610000 perm   1446 sec   (1113 perm/sec)   p_kst 6.211180e-07   p_cons 1   p_joint 6.894410e-05

Joint ci ratio: 3.703923e-01	ci left: 5.636658e-05	ci right 8.251339e-05	k: 111	n:1620000
Cons ci ratio: 2.419750e-06	ci left: 9.999977e-01	ci right 1	k: 1620000	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KRTAP5-5   1620000 perm   1462 sec   (1108 perm/sec)   p_kst 6.172840e-07   p_cons 1   p_joint 6.851852e-05

Joint ci ratio: 3.687497e-01	ci left: 5.657729e-05	ci right 8.267740e-05	k: 112	n:1630000
Cons ci ratio: 2.404905e-06	ci left: 9.999977e-01	ci right 1	k: 1630000	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KRTAP5-5   1630000 perm   1478 sec   (1103 perm/sec)   p_kst 6.134969e-07   p_cons 1   p_joint 6.871166e-05

Joint ci ratio: 3.687498e-01	ci left: 5.623231e-05	ci right 8.217327e-05	k: 112	n:1640000
Cons ci ratio: 2.390241e-06	ci left: 9.999978e-01	ci right 1	k: 1640000	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KRTAP5-5   1640000 perm   1494 sec   (1098 perm/sec)   p_kst 6.097561e-07   p_cons 1   p_joint 6.829268e-05

Joint ci ratio: 3.687498e-01	ci left: 5.589150e-05	ci right 8.167526e-05	k: 112	n:1650000
Cons ci ratio: 2.375755e-06	ci left: 9.999978e-01	ci right 1	k: 1650000	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KRTAP5-5   1650000 perm   1509 sec   (1093 perm/sec)   p_kst 6.060606e-07   p_cons 1   p_joint 6.787879e-05

Joint ci ratio: 3.687499e-01	ci left: 5.555480e-05	ci right 8.118324e-05	k: 112	n:1660000
Cons ci ratio: 2.361443e-06	ci left: 9.999978e-01	ci right 1	k: 1660000	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KRTAP5-5   1660000 perm   1525 sec   (1088 perm/sec)   p_kst 6.024096e-07   p_cons 1   p_joint 6.746988e-05

Joint ci ratio: 3.687500e-01	ci left: 5.522214e-05	ci right 8.069712e-05	k: 112	n:1670000
Cons ci ratio: 2.347303e-06	ci left: 9.999978e-01	ci right 1	k: 1670000	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KRTAP5-5   1670000 perm   1541 sec   (1083 perm/sec)   p_kst 5.988024e-07   p_cons 1   p_joint 6.706587e-05

Joint ci ratio: 3.687501e-01	ci left: 5.489343e-05	ci right 8.021678e-05	k: 112	n:1680000
Cons ci ratio: 2.333331e-06	ci left: 9.999978e-01	ci right 1	k: 1680000	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KRTAP5-5   1680000 perm   1558 sec   (1079 perm/sec)   p_kst 5.952381e-07   p_cons 1   p_joint 6.666667e-05

Joint ci ratio: 3.671291e-01	ci left: 5.510563e-05	ci right 8.038831e-05	k: 113	n:1690000
Cons ci ratio: 2.319524e-06	ci left: 9.999978e-01	ci right 1	k: 1690000	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KRTAP5-5   1690000 perm   1574 sec   (1073 perm/sec)   p_kst 5.917160e-07   p_cons 1   p_joint 6.686391e-05

Joint ci ratio: 3.671292e-01	ci left: 5.478148e-05	ci right 7.991544e-05	k: 113	n:1700000
Cons ci ratio: 2.305880e-06	ci left: 9.999978e-01	ci right 1	k: 1700000	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KRTAP5-5   1700000 perm   1591 sec   (1069 perm/sec)   p_kst 5.882353e-07   p_cons 1   p_joint 6.647059e-05

Joint ci ratio: 3.671293e-01	ci left: 5.446112e-05	ci right 7.944810e-05	k: 113	n:1710000
Cons ci ratio: 2.292395e-06	ci left: 9.999978e-01	ci right 1	k: 1710000	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KRTAP5-5   1710000 perm   1607 sec   (1064 perm/sec)   p_kst 5.847953e-07   p_cons 1   p_joint 6.608187e-05

Joint ci ratio: 3.639505e-01	ci left: 5.520048e-05	ci right 8.025533e-05	k: 115	n:1720000
Cons ci ratio: 2.279067e-06	ci left: 9.999979e-01	ci right 1	k: 1720000	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KRTAP5-5   1720000 perm   1624 sec   (1059 perm/sec)   p_kst 5.813953e-07   p_cons 1   p_joint 6.686047e-05

Joint ci ratio: 3.639506e-01	ci left: 5.488140e-05	ci right 7.979142e-05	k: 115	n:1730000
Cons ci ratio: 2.265893e-06	ci left: 9.999979e-01	ci right 1	k: 1730000	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KRTAP5-5   1730000 perm   1640 sec   (1055 perm/sec)   p_kst 5.780347e-07   p_cons 1   p_joint 6.647399e-05

Joint ci ratio: 3.671295e-01	ci left: 5.352213e-05	ci right 7.807832e-05	k: 113	n:1740000
Cons ci ratio: 2.252871e-06	ci left: 9.999979e-01	ci right 1	k: 1740000	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KRTAP5-5   1740000 perm   1657 sec   (1050 perm/sec)   p_kst 5.747126e-07   p_cons 1   p_joint 6.494253e-05

Joint ci ratio: 3.639507e-01	ci left: 5.425418e-05	ci right 7.887953e-05	k: 115	n:1750000
Cons ci ratio: 2.239997e-06	ci left: 9.999979e-01	ci right 1	k: 1750000	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KRTAP5-5   1750000 perm   1674 sec   (1046 perm/sec)   p_kst 5.714286e-07   p_cons 1   p_joint 6.571429e-05

Joint ci ratio: 3.639508e-01	ci left: 5.394591e-05	ci right 7.843135e-05	k: 115	n:1760000
Cons ci ratio: 2.227270e-06	ci left: 9.999979e-01	ci right 1	k: 1760000	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KRTAP5-5   1760000 perm   1691 sec   (1041 perm/sec)   p_kst 5.681818e-07   p_cons 1   p_joint 6.534091e-05

Joint ci ratio: 3.639508e-01	ci left: 5.364113e-05	ci right 7.798824e-05	k: 115	n:1770000
Cons ci ratio: 2.214687e-06	ci left: 9.999979e-01	ci right 1	k: 1770000	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KRTAP5-5   1770000 perm   1707 sec   (1037 perm/sec)   p_kst 5.649718e-07   p_cons 1   p_joint 6.497175e-05

Joint ci ratio: 3.639509e-01	ci left: 5.333978e-05	ci right 7.755011e-05	k: 115	n:1780000
Cons ci ratio: 2.202245e-06	ci left: 9.999979e-01	ci right 1	k: 1780000	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KRTAP5-5   1780000 perm   1725 sec   (1032 perm/sec)   p_kst 5.617978e-07   p_cons 1   p_joint 6.460674e-05

Joint ci ratio: 3.639510e-01	ci left: 5.304179e-05	ci right 7.711687e-05	k: 115	n:1790000
Cons ci ratio: 2.189942e-06	ci left: 9.999979e-01	ci right 1	k: 1790000	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KRTAP5-5   1790000 perm   1742 sec   (1028 perm/sec)   p_kst 5.586592e-07   p_cons 1   p_joint 6.424581e-05

Joint ci ratio: 3.639510e-01	ci left: 5.274711e-05	ci right 7.668844e-05	k: 115	n:1800000
Cons ci ratio: 2.177775e-06	ci left: 9.999980e-01	ci right 1	k: 1800000	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KRTAP5-5   1800000 perm   1758 sec   (1024 perm/sec)   p_kst 5.555556e-07   p_cons 1   p_joint 6.388889e-05

Joint ci ratio: 3.639511e-01	ci left: 5.245569e-05	ci right 7.626475e-05	k: 115	n:1810000
Cons ci ratio: 2.165743e-06	ci left: 9.999980e-01	ci right 1	k: 1810000	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KRTAP5-5   1810000 perm   1776 sec   (1019 perm/sec)   p_kst 5.524862e-07   p_cons 1   p_joint 6.353591e-05

Joint ci ratio: 3.639512e-01	ci left: 5.216747e-05	ci right 7.584572e-05	k: 115	n:1820000
Cons ci ratio: 2.153844e-06	ci left: 9.999980e-01	ci right 1	k: 1820000	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KRTAP5-5   1820000 perm   1793 sec   (1015 perm/sec)   p_kst 5.494505e-07   p_cons 1   p_joint 6.318681e-05

Joint ci ratio: 3.623924e-01	ci left: 5.237899e-05	ci right 7.602736e-05	k: 116	n:1830000
Cons ci ratio: 2.142074e-06	ci left: 9.999980e-01	ci right 1	k: 1830000	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KRTAP5-5   1830000 perm   1810 sec   (1011 perm/sec)   p_kst 5.464481e-07   p_cons 1   p_joint 6.338798e-05

Joint ci ratio: 3.623925e-01	ci left: 5.209432e-05	ci right 7.561417e-05	k: 116	n:1840000
Cons ci ratio: 2.130432e-06	ci left: 9.999980e-01	ci right 1	k: 1840000	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KRTAP5-5   1840000 perm   1828 sec   (1007 perm/sec)   p_kst 5.434783e-07   p_cons 1   p_joint 6.304348e-05

Joint ci ratio: 3.608536e-01	ci left: 5.230416e-05	ci right 7.579489e-05	k: 117	n:1850000
Cons ci ratio: 2.118917e-06	ci left: 9.999980e-01	ci right 1	k: 1850000	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KRTAP5-5   1850000 perm   1845 sec   (1003 perm/sec)   p_kst 5.405405e-07   p_cons 1   p_joint 6.324324e-05

Joint ci ratio: 3.593342e-01	ci left: 5.251195e-05	ci right 7.597346e-05	k: 118	n:1860000
Cons ci ratio: 2.107525e-06	ci left: 9.999980e-01	ci right 1	k: 1860000	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KRTAP5-5   1860000 perm   1863 sec   (998 perm/sec)   p_kst 5.376344e-07   p_cons 1   p_joint 6.344086e-05

Joint ci ratio: 3.593343e-01	ci left: 5.223114e-05	ci right 7.556719e-05	k: 118	n:1870000
Cons ci ratio: 2.096254e-06	ci left: 9.999980e-01	ci right 1	k: 1870000	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KRTAP5-5   1870000 perm   1881 sec   (994 perm/sec)   p_kst 5.347594e-07   p_cons 1   p_joint 6.310160e-05

Joint ci ratio: 3.671304e-01	ci left: 4.953642e-05	ci right 7.226401e-05	k: 113	n:1880000
Cons ci ratio: 2.085104e-06	ci left: 9.999980e-01	ci right 1	k: 1880000	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KRTAP5-5   1880000 perm   1899 sec   (990 perm/sec)   p_kst 5.319149e-07   p_cons 1   p_joint 6.010638e-05

Joint ci ratio: 3.671305e-01	ci left: 4.927432e-05	ci right 7.188166e-05	k: 113	n:1890000
Cons ci ratio: 2.074072e-06	ci left: 9.999980e-01	ci right 1	k: 1890000	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KRTAP5-5   1890000 perm   1917 sec   (986 perm/sec)   p_kst 5.291005e-07   p_cons 1   p_joint 5.978836e-05

Joint ci ratio: 3.655307e-01	ci left: 4.949285e-05	ci right 7.207789e-05	k: 114	n:1900000
Cons ci ratio: 2.063156e-06	ci left: 9.999981e-01	ci right 1	k: 1900000	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KRTAP5-5   1900000 perm   1937 sec   (981 perm/sec)   p_kst 5.263158e-07   p_cons 1   p_joint 6.000000e-05

Joint ci ratio: 3.655308e-01	ci left: 4.923372e-05	ci right 7.170052e-05	k: 114	n:1910000
Cons ci ratio: 2.052354e-06	ci left: 9.999981e-01	ci right 1	k: 1910000	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KRTAP5-5   1910000 perm   1954 sec   (977 perm/sec)   p_kst 5.235602e-07   p_cons 1   p_joint 5.968586e-05

Joint ci ratio: 3.655308e-01	ci left: 4.897730e-05	ci right 7.132709e-05	k: 114	n:1920000
Cons ci ratio: 2.041665e-06	ci left: 9.999981e-01	ci right 1	k: 1920000	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KRTAP5-5   1920000 perm   1973 sec   (973 perm/sec)   p_kst 5.208333e-07   p_cons 1   p_joint 5.937500e-05

Joint ci ratio: 3.639518e-01	ci left: 4.919418e-05	ci right 7.152293e-05	k: 115	n:1930000
Cons ci ratio: 2.031086e-06	ci left: 9.999981e-01	ci right 1	k: 1930000	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KRTAP5-5   1930000 perm   1991 sec   (969 perm/sec)   p_kst 5.181347e-07   p_cons 1   p_joint 5.958549e-05

Joint ci ratio: 3.623931e-01	ci left: 4.940903e-05	ci right 7.171656e-05	k: 116	n:1940000
Cons ci ratio: 2.020616e-06	ci left: 9.999981e-01	ci right 1	k: 1940000	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KRTAP5-5   1940000 perm   2009 sec   (966 perm/sec)   p_kst 5.154639e-07   p_cons 1   p_joint 5.979381e-05

Joint ci ratio: 3.608542e-01	ci left: 4.962188e-05	ci right 7.190800e-05	k: 117	n:1950000
Cons ci ratio: 2.010254e-06	ci left: 9.999981e-01	ci right 1	k: 1950000	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KRTAP5-5   1950000 perm   2028 sec   (962 perm/sec)   p_kst 5.128205e-07   p_cons 1   p_joint 6.000000e-05

Joint ci ratio: 3.608543e-01	ci left: 4.936871e-05	ci right 7.154112e-05	k: 117	n:1960000
Cons ci ratio: 1.999998e-06	ci left: 9.999981e-01	ci right 1	k: 1960000	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KRTAP5-5   1960000 perm   2046 sec   (958 perm/sec)   p_kst 5.102041e-07   p_cons 1   p_joint 5.969388e-05

Joint ci ratio: 3.608544e-01	ci left: 4.911810e-05	ci right 7.117797e-05	k: 117	n:1970000
Cons ci ratio: 1.989846e-06	ci left: 9.999981e-01	ci right 1	k: 1970000	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KRTAP5-5   1970000 perm   2065 sec   (954 perm/sec)   p_kst 5.076142e-07   p_cons 1   p_joint 5.939086e-05

Joint ci ratio: 3.548891e-01	ci left: 5.070863e-05	ci right 7.301954e-05	k: 121	n:1980000
Cons ci ratio: 1.979796e-06	ci left: 9.999981e-01	ci right 1	k: 1980000	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KRTAP5-5   1980000 perm   2083 sec   (950 perm/sec)   p_kst 5.050505e-07   p_cons 1   p_joint 6.111111e-05

Joint ci ratio: 3.548892e-01	ci left: 5.045381e-05	ci right 7.265261e-05	k: 121	n:1990000
Cons ci ratio: 1.969847e-06	ci left: 9.999981e-01	ci right 1	k: 1990000	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KRTAP5-5   1990000 perm   2102 sec   (947 perm/sec)   p_kst 5.025126e-07   p_cons 1   p_joint 6.080402e-05

Joint ci ratio: 3.534435e-01	ci left: 5.065706e-05	ci right 7.283365e-05	k: 122	n:2000000
Cons ci ratio: 1.959998e-06	ci left: 9.999982e-01	ci right 1	k: 2000000	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KRTAP5-5   2000000 perm   2121 sec   (943 perm/sec)   p_kst 5.000000e-07   p_cons 1   p_joint 6.100000e-05

Joint ci ratio: 3.534436e-01	ci left: 5.040504e-05	ci right 7.247130e-05	k: 122	n:2010000
Cons ci ratio: 1.950247e-06	ci left: 9.999982e-01	ci right 1	k: 2010000	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KRTAP5-5   2010000 perm   2140 sec   (939 perm/sec)   p_kst 4.975124e-07   p_cons 1   p_joint 6.069652e-05

Joint ci ratio: 3.534436e-01	ci left: 5.015550e-05	ci right 7.211253e-05	k: 122	n:2020000
Cons ci ratio: 1.940592e-06	ci left: 9.999982e-01	ci right 1	k: 2020000	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KRTAP5-5   2020000 perm   2158 sec   (936 perm/sec)   p_kst 4.950495e-07   p_cons 1   p_joint 6.039604e-05

Joint ci ratio: 3.534437e-01	ci left: 4.990843e-05	ci right 7.175730e-05	k: 122	n:2030000
Cons ci ratio: 1.931033e-06	ci left: 9.999982e-01	ci right 1	k: 2030000	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KRTAP5-5   2030000 perm   2177 sec   (932 perm/sec)   p_kst 4.926108e-07   p_cons 1   p_joint 6.009852e-05

Joint ci ratio: 3.506046e-01	ci left: 5.055749e-05	ci right 7.247228e-05	k: 124	n:2040000
Cons ci ratio: 1.921567e-06	ci left: 9.999982e-01	ci right 1	k: 2040000	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KRTAP5-5   2040000 perm   2196 sec   (929 perm/sec)   p_kst 4.901961e-07   p_cons 1   p_joint 6.078431e-05

Joint ci ratio: 3.506047e-01	ci left: 5.031087e-05	ci right 7.211876e-05	k: 124	n:2050000
Cons ci ratio: 1.912193e-06	ci left: 9.999982e-01	ci right 1	k: 2050000	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KRTAP5-5   2050000 perm   2216 sec   (925 perm/sec)   p_kst 4.878049e-07   p_cons 1   p_joint 6.048780e-05

Joint ci ratio: 3.492106e-01	ci left: 5.050942e-05	ci right 7.229660e-05	k: 125	n:2060000
Cons ci ratio: 1.902911e-06	ci left: 9.999982e-01	ci right 1	k: 2060000	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KRTAP5-5   2060000 perm   2235 sec   (922 perm/sec)   p_kst 4.854369e-07   p_cons 1   p_joint 6.067961e-05

Joint ci ratio: 3.492106e-01	ci left: 5.026541e-05	ci right 7.194734e-05	k: 125	n:2070000
Cons ci ratio: 1.893718e-06	ci left: 9.999982e-01	ci right 1	k: 2070000	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KRTAP5-5   2070000 perm   2254 sec   (918 perm/sec)   p_kst 4.830918e-07   p_cons 1   p_joint 6.038647e-05

Joint ci ratio: 3.492107e-01	ci left: 5.002375e-05	ci right 7.160144e-05	k: 125	n:2080000
Cons ci ratio: 1.884614e-06	ci left: 9.999982e-01	ci right 1	k: 2080000	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KRTAP5-5   2080000 perm   2274 sec   (915 perm/sec)   p_kst 4.807692e-07   p_cons 1   p_joint 6.009615e-05

Joint ci ratio: 3.492107e-01	ci left: 4.978440e-05	ci right 7.125885e-05	k: 125	n:2090000
Cons ci ratio: 1.875596e-06	ci left: 9.999982e-01	ci right 1	k: 2090000	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KRTAP5-5   2090000 perm   2293 sec   (911 perm/sec)   p_kst 4.784689e-07   p_cons 1   p_joint 5.980861e-05

Joint ci ratio: 3.464717e-01	ci left: 5.041652e-05	ci right 7.195478e-05	k: 127	n:2100000
Cons ci ratio: 1.866665e-06	ci left: 9.999982e-01	ci right 1	k: 2100000	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KRTAP5-5   2100000 perm   2313 sec   (908 perm/sec)   p_kst 4.761905e-07   p_cons 1   p_joint 6.047619e-05

Joint ci ratio: 3.464717e-01	ci left: 5.017757e-05	ci right 7.161376e-05	k: 127	n:2110000
Cons ci ratio: 1.857818e-06	ci left: 9.999983e-01	ci right 1	k: 2110000	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KRTAP5-5   2110000 perm   2333 sec   (904 perm/sec)   p_kst 4.739336e-07   p_cons 1   p_joint 6.018957e-05

Joint ci ratio: 3.464718e-01	ci left: 4.994089e-05	ci right 7.127597e-05	k: 127	n:2120000
Cons ci ratio: 1.849055e-06	ci left: 9.999983e-01	ci right 1	k: 2120000	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KRTAP5-5   2120000 perm   2353 sec   (901 perm/sec)   p_kst 4.716981e-07   p_cons 1   p_joint 5.990566e-05

Joint ci ratio: 3.464718e-01	ci left: 4.970642e-05	ci right 7.094134e-05	k: 127	n:2130000
Cons ci ratio: 1.840374e-06	ci left: 9.999983e-01	ci right 1	k: 2130000	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KRTAP5-5   2130000 perm   2373 sec   (898 perm/sec)   p_kst 4.694836e-07   p_cons 1   p_joint 5.962441e-05

Joint ci ratio: 3.451263e-01	ci left: 4.990086e-05	ci right 7.111755e-05	k: 128	n:2140000
Cons ci ratio: 1.831774e-06	ci left: 9.999983e-01	ci right 1	k: 2140000	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KRTAP5-5   2140000 perm   2393 sec   (894 perm/sec)   p_kst 4.672897e-07   p_cons 1   p_joint 5.981308e-05

Joint ci ratio: 3.520162e-01	ci left: 4.754674e-05	ci right 6.825842e-05	k: 123	n:2150000
Cons ci ratio: 1.823254e-06	ci left: 9.999983e-01	ci right 1	k: 2150000	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KRTAP5-5   2150000 perm   2412 sec   (891 perm/sec)   p_kst 4.651163e-07   p_cons 1   p_joint 5.720930e-05

Joint ci ratio: 3.520162e-01	ci left: 4.732662e-05	ci right 6.794241e-05	k: 123	n:2160000
Cons ci ratio: 1.814813e-06	ci left: 9.999983e-01	ci right 1	k: 2160000	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KRTAP5-5   2160000 perm   2433 sec   (888 perm/sec)   p_kst 4.629630e-07   p_cons 1   p_joint 5.694444e-05

Joint ci ratio: 3.520163e-01	ci left: 4.710852e-05	ci right 6.762932e-05	k: 123	n:2170000
Cons ci ratio: 1.806450e-06	ci left: 9.999983e-01	ci right 1	k: 2170000	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KRTAP5-5   2170000 perm   2453 sec   (885 perm/sec)   p_kst 4.608295e-07   p_cons 1   p_joint 5.668203e-05

Joint ci ratio: 3.506053e-01	ci left: 4.731067e-05	ci right 6.781812e-05	k: 124	n:2180000
Cons ci ratio: 1.798163e-06	ci left: 9.999983e-01	ci right 1	k: 2180000	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KRTAP5-5   2180000 perm   2473 sec   (881 perm/sec)   p_kst 4.587156e-07   p_cons 1   p_joint 5.688073e-05

Joint ci ratio: 3.506054e-01	ci left: 4.709464e-05	ci right 6.750845e-05	k: 124	n:2190000
Cons ci ratio: 1.789953e-06	ci left: 9.999983e-01	ci right 1	k: 2190000	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KRTAP5-5   2190000 perm   2493 sec   (878 perm/sec)   p_kst 4.566210e-07   p_cons 1   p_joint 5.662100e-05

Joint ci ratio: 3.548902e-01	ci left: 4.563774e-05	ci right 6.571763e-05	k: 121	n:2200000
Cons ci ratio: 1.781817e-06	ci left: 9.999983e-01	ci right 1	k: 2200000	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KRTAP5-5   2200000 perm   2514 sec   (875 perm/sec)   p_kst 4.545455e-07   p_cons 1   p_joint 5.500000e-05

Joint ci ratio: 3.534446e-01	ci left: 4.584347e-05	ci right 6.591285e-05	k: 122	n:2210000
Cons ci ratio: 1.773754e-06	ci left: 9.999983e-01	ci right 1	k: 2210000	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KRTAP5-5   2210000 perm   2535 sec   (872 perm/sec)   p_kst 4.524887e-07   p_cons 1   p_joint 5.520362e-05

Joint ci ratio: 3.534446e-01	ci left: 4.563697e-05	ci right 6.561594e-05	k: 122	n:2220000
Cons ci ratio: 1.765764e-06	ci left: 9.999983e-01	ci right 1	k: 2220000	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KRTAP5-5   2220000 perm   2556 sec   (869 perm/sec)   p_kst 4.504505e-07   p_cons 1   p_joint 5.495495e-05

Joint ci ratio: 3.534447e-01	ci left: 4.543232e-05	ci right 6.532170e-05	k: 122	n:2230000
Cons ci ratio: 1.757846e-06	ci left: 9.999983e-01	ci right 1	k: 2230000	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KRTAP5-5   2230000 perm   2576 sec   (866 perm/sec)   p_kst 4.484305e-07   p_cons 1   p_joint 5.470852e-05

Joint ci ratio: 3.520166e-01	ci left: 4.563637e-05	ci right 6.551591e-05	k: 123	n:2240000
Cons ci ratio: 1.749998e-06	ci left: 9.999984e-01	ci right 1	k: 2240000	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KRTAP5-5   2240000 perm   2597 sec   (862 perm/sec)   p_kst 4.464286e-07   p_cons 1   p_joint 5.491071e-05

Joint ci ratio: 3.520166e-01	ci left: 4.543354e-05	ci right 6.522473e-05	k: 123	n:2250000
Cons ci ratio: 1.742221e-06	ci left: 9.999984e-01	ci right 1	k: 2250000	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KRTAP5-5   2250000 perm   2618 sec   (859 perm/sec)   p_kst 4.444444e-07   p_cons 1   p_joint 5.466667e-05

Joint ci ratio: 3.478339e-01	ci left: 4.644329e-05	ci right 6.637976e-05	k: 126	n:2260000
Cons ci ratio: 1.734512e-06	ci left: 9.999984e-01	ci right 1	k: 2260000	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KRTAP5-5   2260000 perm   2639 sec   (856 perm/sec)   p_kst 4.424779e-07   p_cons 1   p_joint 5.575221e-05

Joint ci ratio: 3.478339e-01	ci left: 4.623869e-05	ci right 6.608734e-05	k: 126	n:2270000
Cons ci ratio: 1.726871e-06	ci left: 9.999984e-01	ci right 1	k: 2270000	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KRTAP5-5   2270000 perm   2660 sec   (853 perm/sec)   p_kst 4.405286e-07   p_cons 1   p_joint 5.550661e-05

Joint ci ratio: 3.478340e-01	ci left: 4.603589e-05	ci right 6.579748e-05	k: 126	n:2280000
Cons ci ratio: 1.719297e-06	ci left: 9.999984e-01	ci right 1	k: 2280000	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KRTAP5-5   2280000 perm   2681 sec   (850 perm/sec)   p_kst 4.385965e-07   p_cons 1   p_joint 5.526316e-05

Joint ci ratio: 3.478340e-01	ci left: 4.583486e-05	ci right 6.551016e-05	k: 126	n:2290000
Cons ci ratio: 1.711789e-06	ci left: 9.999984e-01	ci right 1	k: 2290000	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KRTAP5-5   2290000 perm   2702 sec   (847 perm/sec)   p_kst 4.366812e-07   p_cons 1   p_joint 5.502183e-05

Joint ci ratio: 3.478341e-01	ci left: 4.563557e-05	ci right 6.522533e-05	k: 126	n:2300000
Cons ci ratio: 1.704346e-06	ci left: 9.999984e-01	ci right 1	k: 2300000	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KRTAP5-5   2300000 perm   2723 sec   (845 perm/sec)   p_kst 4.347826e-07   p_cons 1   p_joint 5.478261e-05

Joint ci ratio: 3.478341e-01	ci left: 4.543802e-05	ci right 6.494298e-05	k: 126	n:2310000
Cons ci ratio: 1.696968e-06	ci left: 9.999984e-01	ci right 1	k: 2310000	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KRTAP5-5   2310000 perm   2745 sec   (842 perm/sec)   p_kst 4.329004e-07   p_cons 1   p_joint 5.454545e-05

Joint ci ratio: 3.478342e-01	ci left: 4.524216e-05	ci right 6.466305e-05	k: 126	n:2320000
Cons ci ratio: 1.689654e-06	ci left: 9.999984e-01	ci right 1	k: 2320000	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KRTAP5-5   2320000 perm   2766 sec   (839 perm/sec)   p_kst 4.310345e-07   p_cons 1   p_joint 5.431034e-05

Joint ci ratio: 3.771934e-01	ci left: 3.763495e-05	ci right 5.549267e-05	k: 107	n:2330000
Cons ci ratio: 1.682402e-06	ci left: 9.999984e-01	ci right 1	k: 2330000	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KRTAP5-5   2330000 perm   2788 sec   (836 perm/sec)   p_kst 4.291845e-07   p_cons 1   p_joint 4.592275e-05

Joint ci ratio: 3.771934e-01	ci left: 3.747411e-05	ci right 5.525553e-05	k: 107	n:2340000
Cons ci ratio: 1.675212e-06	ci left: 9.999984e-01	ci right 1	k: 2340000	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KRTAP5-5   2340000 perm   2809 sec   (833 perm/sec)   p_kst 4.273504e-07   p_cons 1   p_joint 4.572650e-05

Joint ci ratio: 3.771934e-01	ci left: 3.731465e-05	ci right 5.502040e-05	k: 107	n:2350000
Cons ci ratio: 1.668084e-06	ci left: 9.999984e-01	ci right 1	k: 2350000	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KRTAP5-5   2350000 perm   2831 sec   (830 perm/sec)   p_kst 4.255319e-07   p_cons 1   p_joint 4.553191e-05

Joint ci ratio: 3.771935e-01	ci left: 3.715653e-05	ci right 5.478726e-05	k: 107	n:2360000
Cons ci ratio: 1.661016e-06	ci left: 9.999984e-01	ci right 1	k: 2360000	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KRTAP5-5   2360000 perm   2852 sec   (828 perm/sec)   p_kst 4.237288e-07   p_cons 1   p_joint 4.533898e-05

Joint ci ratio: 3.771935e-01	ci left: 3.699976e-05	ci right 5.455609e-05	k: 107	n:2370000
Cons ci ratio: 1.654007e-06	ci left: 9.999984e-01	ci right 1	k: 2370000	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KRTAP5-5   2370000 perm   2873 sec   (825 perm/sec)   p_kst 4.219409e-07   p_cons 1   p_joint 4.514768e-05

Joint ci ratio: 3.754592e-01	ci left: 3.722472e-05	ci right 5.478660e-05	k: 108	n:2380000
Cons ci ratio: 1.647057e-06	ci left: 9.999985e-01	ci right 1	k: 2380000	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KRTAP5-5   2380000 perm   2895 sec   (822 perm/sec)   p_kst 4.201681e-07   p_cons 1   p_joint 4.537815e-05

Joint ci ratio: 3.737487e-01	ci left: 3.744799e-05	ci right 5.501499e-05	k: 109	n:2390000
Cons ci ratio: 1.640166e-06	ci left: 9.999985e-01	ci right 1	k: 2390000	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KRTAP5-5   2390000 perm   2917 sec   (819 perm/sec)   p_kst 4.184100e-07   p_cons 1   p_joint 4.560669e-05

Joint ci ratio: 3.737487e-01	ci left: 3.729195e-05	ci right 5.478576e-05	k: 109	n:2400000
Cons ci ratio: 1.633332e-06	ci left: 9.999985e-01	ci right 1	k: 2400000	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KRTAP5-5   2400000 perm   2939 sec   (817 perm/sec)   p_kst 4.166667e-07   p_cons 1   p_joint 4.541667e-05

Joint ci ratio: 3.737487e-01	ci left: 3.713721e-05	ci right 5.455843e-05	k: 109	n:2410000
Cons ci ratio: 1.626555e-06	ci left: 9.999985e-01	ci right 1	k: 2410000	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KRTAP5-5   2410000 perm   2961 sec   (814 perm/sec)   p_kst 4.149378e-07   p_cons 1   p_joint 4.522822e-05

Joint ci ratio: 3.737488e-01	ci left: 3.698375e-05	ci right 5.433299e-05	k: 109	n:2420000
Cons ci ratio: 1.619833e-06	ci left: 9.999985e-01	ci right 1	k: 2420000	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KRTAP5-5   2420000 perm   2983 sec   (811 perm/sec)   p_kst 4.132231e-07   p_cons 1   p_joint 4.504132e-05

Joint ci ratio: 3.843793e-01	ci left: 3.459763e-05	ci right 5.140613e-05	k: 103	n:2430000
Cons ci ratio: 1.613167e-06	ci left: 9.999985e-01	ci right 1	k: 2430000	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KRTAP5-5   2430000 perm   3005 sec   (809 perm/sec)   p_kst 4.115226e-07   p_cons 1   p_joint 4.238683e-05

Joint ci ratio: 3.843794e-01	ci left: 3.445584e-05	ci right 5.119545e-05	k: 103	n:2440000
Cons ci ratio: 1.606556e-06	ci left: 9.999985e-01	ci right 1	k: 2440000	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KRTAP5-5   2440000 perm   3028 sec   (806 perm/sec)   p_kst 4.098361e-07   p_cons 1   p_joint 4.221311e-05

Joint ci ratio: 3.843794e-01	ci left: 3.431520e-05	ci right 5.098649e-05	k: 103	n:2450000
Cons ci ratio: 1.599999e-06	ci left: 9.999985e-01	ci right 1	k: 2450000	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KRTAP5-5   2450000 perm   3051 sec   (803 perm/sec)   p_kst 4.081633e-07   p_cons 1   p_joint 4.204082e-05

Joint ci ratio: 3.807358e-01	ci left: 3.491053e-05	ci right 5.167005e-05	k: 105	n:2460000
Cons ci ratio: 1.593495e-06	ci left: 9.999985e-01	ci right 1	k: 2460000	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KRTAP5-5   2460000 perm   3073 sec   (800 perm/sec)   p_kst 4.065041e-07   p_cons 1   p_joint 4.268293e-05

Joint ci ratio: 3.807358e-01	ci left: 3.476920e-05	ci right 5.146086e-05	k: 105	n:2470000
Cons ci ratio: 1.587043e-06	ci left: 9.999985e-01	ci right 1	k: 2470000	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KRTAP5-5   2470000 perm   3096 sec   (798 perm/sec)   p_kst 4.048583e-07   p_cons 1   p_joint 4.251012e-05

Joint ci ratio: 3.789525e-01	ci left: 3.499372e-05	ci right 5.169491e-05	k: 106	n:2480000
Cons ci ratio: 1.580644e-06	ci left: 9.999985e-01	ci right 1	k: 2480000	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KRTAP5-5   2480000 perm   3118 sec   (795 perm/sec)   p_kst 4.032258e-07   p_cons 1   p_joint 4.274194e-05

Joint ci ratio: 3.789525e-01	ci left: 3.485319e-05	ci right 5.148730e-05	k: 106	n:2490000
Cons ci ratio: 1.574296e-06	ci left: 9.999985e-01	ci right 1	k: 2490000	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KRTAP5-5   2490000 perm   3141 sec   (793 perm/sec)   p_kst 4.016064e-07   p_cons 1   p_joint 4.257028e-05

Joint ci ratio: 3.771940e-01	ci left: 3.507576e-05	ci right 5.171919e-05	k: 107	n:2500000
Cons ci ratio: 1.567999e-06	ci left: 9.999985e-01	ci right 1	k: 2500000	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KRTAP5-5   2500000 perm   3165 sec   (790 perm/sec)   p_kst 4.000000e-07   p_cons 1   p_joint 4.280000e-05

Joint ci ratio: 3.771940e-01	ci left: 3.493602e-05	ci right 5.151314e-05	k: 107	n:2510000
Cons ci ratio: 1.561752e-06	ci left: 9.999985e-01	ci right 1	k: 2510000	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KRTAP5-5   2510000 perm   3188 sec   (787 perm/sec)   p_kst 3.984064e-07   p_cons 1   p_joint 4.262948e-05

Joint ci ratio: 3.737491e-01	ci left: 3.551614e-05	ci right 5.217693e-05	k: 109	n:2520000
Cons ci ratio: 1.555554e-06	ci left: 9.999985e-01	ci right 1	k: 2520000	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KRTAP5-5   2520000 perm   3211 sec   (785 perm/sec)   p_kst 3.968254e-07   p_cons 1   p_joint 4.325397e-05

Joint ci ratio: 3.720617e-01	ci left: 3.573397e-05	ci right 5.240283e-05	k: 110	n:2530000
Cons ci ratio: 1.549406e-06	ci left: 9.999985e-01	ci right 1	k: 2530000	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KRTAP5-5   2530000 perm   3234 sec   (782 perm/sec)   p_kst 3.952569e-07   p_cons 1   p_joint 4.347826e-05

Joint ci ratio: 3.703969e-01	ci left: 3.595026e-05	ci right 5.262679e-05	k: 111	n:2540000
Cons ci ratio: 1.543306e-06	ci left: 9.999985e-01	ci right 1	k: 2540000	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KRTAP5-5   2540000 perm   3258 sec   (780 perm/sec)   p_kst 3.937008e-07   p_cons 1   p_joint 4.370079e-05

Joint ci ratio: 3.703970e-01	ci left: 3.580928e-05	ci right 5.242041e-05	k: 111	n:2550000
Cons ci ratio: 1.537254e-06	ci left: 9.999986e-01	ci right 1	k: 2550000	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KRTAP5-5   2550000 perm   3281 sec   (777 perm/sec)   p_kst 3.921569e-07   p_cons 1   p_joint 4.352941e-05

Joint ci ratio: 3.703970e-01	ci left: 3.566940e-05	ci right 5.221564e-05	k: 111	n:2560000
Cons ci ratio: 1.531249e-06	ci left: 9.999986e-01	ci right 1	k: 2560000	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KRTAP5-5   2560000 perm   3305 sec   (775 perm/sec)   p_kst 3.906250e-07   p_cons 1   p_joint 4.335938e-05

Joint ci ratio: 3.687544e-01	ci left: 3.588358e-05	ci right 5.243755e-05	k: 112	n:2570000
Cons ci ratio: 1.525291e-06	ci left: 9.999986e-01	ci right 1	k: 2570000	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KRTAP5-5   2570000 perm   3328 sec   (772 perm/sec)   p_kst 3.891051e-07   p_cons 1   p_joint 4.357977e-05

Joint ci ratio: 3.671335e-01	ci left: 3.609625e-05	ci right 5.265758e-05	k: 113	n:2580000
Cons ci ratio: 1.519379e-06	ci left: 9.999986e-01	ci right 1	k: 2580000	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KRTAP5-5   2580000 perm   3352 sec   (770 perm/sec)   p_kst 3.875969e-07   p_cons 1   p_joint 4.379845e-05

Joint ci ratio: 3.655337e-01	ci left: 3.630745e-05	ci right 5.287576e-05	k: 114	n:2590000
Cons ci ratio: 1.513512e-06	ci left: 9.999986e-01	ci right 1	k: 2590000	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KRTAP5-5   2590000 perm   3376 sec   (767 perm/sec)   p_kst 3.861004e-07   p_cons 1   p_joint 4.401544e-05

Joint ci ratio: 3.623959e-01	ci left: 3.686669e-05	ci right 5.351167e-05	k: 116	n:2600000
Cons ci ratio: 1.507691e-06	ci left: 9.999986e-01	ci right 1	k: 2600000	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KRTAP5-5   2600000 perm   3400 sec   (765 perm/sec)   p_kst 3.846154e-07   p_cons 1   p_joint 4.461538e-05

Joint ci ratio: 3.623959e-01	ci left: 3.672544e-05	ci right 5.330664e-05	k: 116	n:2610000
Cons ci ratio: 1.501915e-06	ci left: 9.999986e-01	ci right 1	k: 2610000	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KRTAP5-5   2610000 perm   3423 sec   (762 perm/sec)   p_kst 3.831418e-07   p_cons 1   p_joint 4.444444e-05

Joint ci ratio: 3.608571e-01	ci left: 3.693227e-05	ci right 5.351939e-05	k: 117	n:2620000
Cons ci ratio: 1.496182e-06	ci left: 9.999986e-01	ci right 1	k: 2620000	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KRTAP5-5   2620000 perm   3447 sec   (760 perm/sec)   p_kst 3.816794e-07   p_cons 1   p_joint 4.465649e-05

Joint ci ratio: 3.608571e-01	ci left: 3.679184e-05	ci right 5.331590e-05	k: 117	n:2630000
Cons ci ratio: 1.490493e-06	ci left: 9.999986e-01	ci right 1	k: 2630000	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KRTAP5-5   2630000 perm   3471 sec   (758 perm/sec)   p_kst 3.802281e-07   p_cons 1   p_joint 4.448669e-05

Joint ci ratio: 3.593376e-01	ci left: 3.699700e-05	ci right 5.352686e-05	k: 118	n:2640000
Cons ci ratio: 1.484847e-06	ci left: 9.999986e-01	ci right 1	k: 2640000	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KRTAP5-5   2640000 perm   3495 sec   (755 perm/sec)   p_kst 3.787879e-07   p_cons 1   p_joint 4.469697e-05

Joint ci ratio: 3.578372e-01	ci left: 3.720075e-05	ci right 5.373608e-05	k: 119	n:2650000
Cons ci ratio: 1.479244e-06	ci left: 9.999986e-01	ci right 1	k: 2650000	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KRTAP5-5   2650000 perm   3519 sec   (753 perm/sec)   p_kst 3.773585e-07   p_cons 1   p_joint 4.490566e-05

Joint ci ratio: 3.578373e-01	ci left: 3.706090e-05	ci right 5.353407e-05	k: 119	n:2660000
Cons ci ratio: 1.473683e-06	ci left: 9.999986e-01	ci right 1	k: 2660000	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KRTAP5-5   2660000 perm   3543 sec   (751 perm/sec)   p_kst 3.759398e-07   p_cons 1   p_joint 4.473684e-05

Joint ci ratio: 3.578373e-01	ci left: 3.692209e-05	ci right 5.333356e-05	k: 119	n:2670000
Cons ci ratio: 1.468164e-06	ci left: 9.999986e-01	ci right 1	k: 2670000	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KRTAP5-5   2670000 perm   3568 sec   (748 perm/sec)   p_kst 3.745318e-07   p_cons 1   p_joint 4.456929e-05

Joint ci ratio: 3.548920e-01	ci left: 3.746379e-05	ci right 5.394736e-05	k: 121	n:2680000
Cons ci ratio: 1.462685e-06	ci left: 9.999986e-01	ci right 1	k: 2680000	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KRTAP5-5   2680000 perm   3592 sec   (746 perm/sec)   p_kst 3.731343e-07   p_cons 1   p_joint 4.514925e-05

Joint ci ratio: 3.520182e-01	ci left: 3.800201e-05	ci right 5.455605e-05	k: 123	n:2690000
Cons ci ratio: 1.457248e-06	ci left: 9.999986e-01	ci right 1	k: 2690000	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KRTAP5-5   2690000 perm   3617 sec   (744 perm/sec)   p_kst 3.717472e-07   p_cons 1   p_joint 4.572491e-05

Joint ci ratio: 3.492131e-01	ci left: 3.853677e-05	ci right 5.515970e-05	k: 125	n:2700000
Cons ci ratio: 1.451851e-06	ci left: 9.999986e-01	ci right 1	k: 2700000	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KRTAP5-5   2700000 perm   3641 sec   (741 perm/sec)   p_kst 3.703704e-07   p_cons 1   p_joint 4.629630e-05

Joint ci ratio: 3.464741e-01	ci left: 3.906811e-05	ci right 5.575839e-05	k: 127	n:2710000
Cons ci ratio: 1.446493e-06	ci left: 9.999986e-01	ci right 1	k: 2710000	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KRTAP5-5   2710000 perm   3667 sec   (739 perm/sec)   p_kst 3.690037e-07   p_cons 1   p_joint 4.686347e-05

Joint ci ratio: 3.464741e-01	ci left: 3.892447e-05	ci right 5.555340e-05	k: 127	n:2720000
Cons ci ratio: 1.441175e-06	ci left: 9.999986e-01	ci right 1	k: 2720000	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KRTAP5-5   2720000 perm   3691 sec   (737 perm/sec)   p_kst 3.676471e-07   p_cons 1   p_joint 4.669118e-05

Joint ci ratio: 3.464741e-01	ci left: 3.878189e-05	ci right 5.534990e-05	k: 127	n:2730000
Cons ci ratio: 1.435896e-06	ci left: 9.999986e-01	ci right 1	k: 2730000	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KRTAP5-5   2730000 perm   3716 sec   (735 perm/sec)   p_kst 3.663004e-07   p_cons 1   p_joint 4.652015e-05

Joint ci ratio: 3.451286e-01	ci left: 3.897362e-05	ci right 5.554443e-05	k: 128	n:2740000
Cons ci ratio: 1.430656e-06	ci left: 9.999987e-01	ci right 1	k: 2740000	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KRTAP5-5   2740000 perm   3741 sec   (732 perm/sec)   p_kst 3.649635e-07   p_cons 1   p_joint 4.671533e-05

Joint ci ratio: 3.451286e-01	ci left: 3.883190e-05	ci right 5.534245e-05	k: 128	n:2750000
Cons ci ratio: 1.425454e-06	ci left: 9.999987e-01	ci right 1	k: 2750000	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KRTAP5-5   2750000 perm   3766 sec   (730 perm/sec)   p_kst 3.636364e-07   p_cons 1   p_joint 4.654545e-05

Joint ci ratio: 3.451286e-01	ci left: 3.869120e-05	ci right 5.514194e-05	k: 128	n:2760000
Cons ci ratio: 1.420289e-06	ci left: 9.999987e-01	ci right 1	k: 2760000	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KRTAP5-5   2760000 perm   3791 sec   (728 perm/sec)   p_kst 3.623188e-07   p_cons 1   p_joint 4.637681e-05

Joint ci ratio: 3.478357e-01	ci left: 3.789233e-05	ci right 5.415827e-05	k: 126	n:2770000
Cons ci ratio: 1.415161e-06	ci left: 9.999987e-01	ci right 1	k: 2770000	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KRTAP5-5   2770000 perm   3816 sec   (726 perm/sec)   p_kst 3.610108e-07   p_cons 1   p_joint 4.548736e-05

Joint ci ratio: 3.478357e-01	ci left: 3.775602e-05	ci right 5.396345e-05	k: 126	n:2780000
Cons ci ratio: 1.410071e-06	ci left: 9.999987e-01	ci right 1	k: 2780000	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KRTAP5-5   2780000 perm   3842 sec   (724 perm/sec)   p_kst 3.597122e-07   p_cons 1   p_joint 4.532374e-05

Joint ci ratio: 3.464743e-01	ci left: 3.794787e-05	ci right 5.415959e-05	k: 127	n:2790000
Cons ci ratio: 1.405017e-06	ci left: 9.999987e-01	ci right 1	k: 2790000	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KRTAP5-5   2790000 perm   3867 sec   (721 perm/sec)   p_kst 3.584229e-07   p_cons 1   p_joint 4.551971e-05

Joint ci ratio: 3.451287e-01	ci left: 3.813847e-05	ci right 5.435420e-05	k: 128	n:2800000
Cons ci ratio: 1.399999e-06	ci left: 9.999987e-01	ci right 1	k: 2800000	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KRTAP5-5   2800000 perm   3892 sec   (719 perm/sec)   p_kst 3.571429e-07   p_cons 1   p_joint 4.571429e-05

Joint ci ratio: 3.478358e-01	ci left: 3.735293e-05	ci right 5.338734e-05	k: 126	n:2810000
Cons ci ratio: 1.395017e-06	ci left: 9.999987e-01	ci right 1	k: 2810000	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KRTAP5-5   2810000 perm   3917 sec   (717 perm/sec)   p_kst 3.558719e-07   p_cons 1   p_joint 4.483986e-05

Joint ci ratio: 3.451288e-01	ci left: 3.786798e-05	ci right 5.396871e-05	k: 128	n:2820000
Cons ci ratio: 1.390070e-06	ci left: 9.999987e-01	ci right 1	k: 2820000	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KRTAP5-5   2820000 perm   3943 sec   (715 perm/sec)   p_kst 3.546099e-07   p_cons 1   p_joint 4.539007e-05

Joint ci ratio: 3.437988e-01	ci left: 3.805697e-05	ci right 5.416182e-05	k: 129	n:2830000
Cons ci ratio: 1.385158e-06	ci left: 9.999987e-01	ci right 1	k: 2830000	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KRTAP5-5   2830000 perm   3968 sec   (713 perm/sec)   p_kst 3.533569e-07   p_cons 1   p_joint 4.558304e-05

Joint ci ratio: 3.424840e-01	ci left: 3.824474e-05	ci right 5.435344e-05	k: 130	n:2840000
Cons ci ratio: 1.380281e-06	ci left: 9.999987e-01	ci right 1	k: 2840000	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KRTAP5-5   2840000 perm   3994 sec   (711 perm/sec)   p_kst 3.521127e-07   p_cons 1   p_joint 4.577465e-05

Joint ci ratio: 3.398991e-01	ci left: 3.875218e-05	ci right 5.492438e-05	k: 132	n:2850000
Cons ci ratio: 1.375438e-06	ci left: 9.999987e-01	ci right 1	k: 2850000	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KRTAP5-5   2850000 perm   4020 sec   (709 perm/sec)   p_kst 3.508772e-07   p_cons 1   p_joint 4.631579e-05

Joint ci ratio: 3.398991e-01	ci left: 3.861668e-05	ci right 5.473234e-05	k: 132	n:2860000
Cons ci ratio: 1.370628e-06	ci left: 9.999987e-01	ci right 1	k: 2860000	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KRTAP5-5   2860000 perm   4046 sec   (707 perm/sec)   p_kst 3.496503e-07   p_cons 1   p_joint 4.615385e-05

Joint ci ratio: 3.398992e-01	ci left: 3.848213e-05	ci right 5.454163e-05	k: 132	n:2870000
Cons ci ratio: 1.365853e-06	ci left: 9.999987e-01	ci right 1	k: 2870000	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KRTAP5-5   2870000 perm   4072 sec   (705 perm/sec)   p_kst 3.484321e-07   p_cons 1   p_joint 4.599303e-05

Joint ci ratio: 3.398992e-01	ci left: 3.834851e-05	ci right 5.435225e-05	k: 132	n:2880000
Cons ci ratio: 1.361110e-06	ci left: 9.999987e-01	ci right 1	k: 2880000	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KRTAP5-5   2880000 perm   4098 sec   (703 perm/sec)   p_kst 3.472222e-07   p_cons 1   p_joint 4.583333e-05

Joint ci ratio: 3.386285e-01	ci left: 3.853236e-05	ci right 5.453957e-05	k: 133	n:2890000
Cons ci ratio: 1.356400e-06	ci left: 9.999987e-01	ci right 1	k: 2890000	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KRTAP5-5   2890000 perm   4125 sec   (701 perm/sec)   p_kst 3.460208e-07   p_cons 1   p_joint 4.602076e-05

Joint ci ratio: 3.464746e-01	ci left: 3.650846e-05	ci right 5.210527e-05	k: 127	n:2900000
Cons ci ratio: 1.351723e-06	ci left: 9.999987e-01	ci right 1	k: 2900000	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KRTAP5-5   2900000 perm   4151 sec   (699 perm/sec)   p_kst 3.448276e-07   p_cons 1   p_joint 4.379310e-05

Joint ci ratio: 3.451290e-01	ci left: 3.669681e-05	ci right 5.229958e-05	k: 128	n:2910000
Cons ci ratio: 1.347078e-06	ci left: 9.999987e-01	ci right 1	k: 2910000	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KRTAP5-5   2910000 perm   4178 sec   (697 perm/sec)   p_kst 3.436426e-07   p_cons 1   p_joint 4.398625e-05

Joint ci ratio: 3.437990e-01	ci left: 3.688397e-05	ci right 5.249245e-05	k: 129	n:2920000
Cons ci ratio: 1.342465e-06	ci left: 9.999987e-01	ci right 1	k: 2920000	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KRTAP5-5   2920000 perm   4204 sec   (695 perm/sec)   p_kst 3.424658e-07   p_cons 1   p_joint 4.417808e-05

Joint ci ratio: 3.411845e-01	ci left: 3.738198e-05	ci right 5.305437e-05	k: 131	n:2930000
Cons ci ratio: 1.337883e-06	ci left: 9.999987e-01	ci right 1	k: 2930000	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KRTAP5-5   2930000 perm   4230 sec   (693 perm/sec)   p_kst 3.412969e-07   p_cons 1   p_joint 4.470990e-05

Joint ci ratio: 3.411845e-01	ci left: 3.725483e-05	ci right 5.287392e-05	k: 131	n:2940000
Cons ci ratio: 1.333332e-06	ci left: 9.999987e-01	ci right 1	k: 2940000	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KRTAP5-5   2940000 perm   4257 sec   (691 perm/sec)   p_kst 3.401361e-07   p_cons 1   p_joint 4.455782e-05

Joint ci ratio: 3.398994e-01	ci left: 3.743854e-05	ci right 5.306254e-05	k: 132	n:2950000
Cons ci ratio: 1.328813e-06	ci left: 9.999987e-01	ci right 1	k: 2950000	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KRTAP5-5   2950000 perm   4283 sec   (689 perm/sec)   p_kst 3.389831e-07   p_cons 1   p_joint 4.474576e-05

Joint ci ratio: 3.398994e-01	ci left: 3.731206e-05	ci right 5.288328e-05	k: 132	n:2960000
Cons ci ratio: 1.324323e-06	ci left: 9.999988e-01	ci right 1	k: 2960000	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KRTAP5-5   2960000 perm   4310 sec   (687 perm/sec)   p_kst 3.378378e-07   p_cons 1   p_joint 4.459459e-05

Joint ci ratio: 3.398994e-01	ci left: 3.718643e-05	ci right 5.270522e-05	k: 132	n:2970000
Cons ci ratio: 1.319864e-06	ci left: 9.999988e-01	ci right 1	k: 2970000	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KRTAP5-5   2970000 perm   4337 sec   (685 perm/sec)   p_kst 3.367003e-07   p_cons 1   p_joint 4.444444e-05

Joint ci ratio: 3.386288e-01	ci left: 3.736863e-05	ci right 5.289241e-05	k: 133	n:2980000
Cons ci ratio: 1.315435e-06	ci left: 9.999988e-01	ci right 1	k: 2980000	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KRTAP5-5   2980000 perm   4363 sec   (683 perm/sec)   p_kst 3.355705e-07   p_cons 1   p_joint 4.463087e-05

Joint ci ratio: 3.361295e-01	ci left: 3.785588e-05	ci right 5.344086e-05	k: 135	n:2990000
Cons ci ratio: 1.311036e-06	ci left: 9.999988e-01	ci right 1	k: 2990000	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KRTAP5-5   2990000 perm   4391 sec   (681 perm/sec)   p_kst 3.344482e-07   p_cons 1   p_joint 4.515050e-05

Joint ci ratio: 3.128418e-01	ci left: 4.416034e-05	ci right 6.083016e-05	k: 156	n:3000000
Cons ci ratio: 1.306666e-06	ci left: 9.999988e-01	ci right 1	k: 3000000	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KRTAP5-5   3000000 perm   4418 sec   (679 perm/sec)   p_kst 3.333333e-07   p_cons 1   p_joint 5.200000e-05

Joint ci ratio: 3.128418e-01	ci left: 4.401363e-05	ci right 6.062807e-05	k: 156	n:3010000
Cons ci ratio: 1.302325e-06	ci left: 9.999988e-01	ci right 1	k: 3010000	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KRTAP5-5   3010000 perm   4445 sec   (677 perm/sec)   p_kst 3.322259e-07   p_cons 1   p_joint 5.182724e-05

Joint ci ratio: 3.118502e-01	ci left: 4.417306e-05	ci right 6.078431e-05	k: 157	n:3020000
Cons ci ratio: 1.298012e-06	ci left: 9.999988e-01	ci right 1	k: 3020000	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KRTAP5-5   3020000 perm   4472 sec   (675 perm/sec)   p_kst 3.311258e-07   p_cons 1   p_joint 5.198675e-05

Joint ci ratio: 3.118503e-01	ci left: 4.402728e-05	ci right 6.058370e-05	k: 157	n:3030000
Cons ci ratio: 1.293729e-06	ci left: 9.999988e-01	ci right 1	k: 3030000	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KRTAP5-5   3030000 perm   4500 sec   (673 perm/sec)   p_kst 3.300330e-07   p_cons 1   p_joint 5.181518e-05

Joint ci ratio: 3.108680e-01	ci left: 4.418570e-05	ci right 6.073898e-05	k: 158	n:3040000
Cons ci ratio: 1.289473e-06	ci left: 9.999988e-01	ci right 1	k: 3040000	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KRTAP5-5   3040000 perm   4527 sec   (672 perm/sec)   p_kst 3.289474e-07   p_cons 1   p_joint 5.197368e-05

Joint ci ratio: 3.089311e-01	ci left: 4.464558e-05	ci right 6.124640e-05	k: 160	n:3050000
Cons ci ratio: 1.285245e-06	ci left: 9.999988e-01	ci right 1	k: 3050000	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KRTAP5-5   3050000 perm   4554 sec   (670 perm/sec)   p_kst 3.278689e-07   p_cons 1   p_joint 5.245902e-05

Joint ci ratio: 3.089311e-01	ci left: 4.449968e-05	ci right 6.104625e-05	k: 160	n:3060000
Cons ci ratio: 1.281045e-06	ci left: 9.999988e-01	ci right 1	k: 3060000	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KRTAP5-5   3060000 perm   4582 sec   (668 perm/sec)   p_kst 3.267974e-07   p_cons 1   p_joint 5.228758e-05

Joint ci ratio: 3.158746e-01	ci left: 4.225330e-05	ci right 5.838913e-05	k: 153	n:3070000
Cons ci ratio: 1.276872e-06	ci left: 9.999988e-01	ci right 1	k: 3070000	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KRTAP5-5   3070000 perm   4609 sec   (666 perm/sec)   p_kst 3.257329e-07   p_cons 1   p_joint 4.983713e-05

Joint ci ratio: 3.158747e-01	ci left: 4.211612e-05	ci right 5.819955e-05	k: 153	n:3080000
Cons ci ratio: 1.272726e-06	ci left: 9.999988e-01	ci right 1	k: 3080000	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KRTAP5-5   3080000 perm   4638 sec   (664 perm/sec)   p_kst 3.246753e-07   p_cons 1   p_joint 4.967532e-05

Joint ci ratio: 3.148540e-01	ci left: 4.227783e-05	ci right 5.836036e-05	k: 154	n:3090000
Cons ci ratio: 1.268608e-06	ci left: 9.999988e-01	ci right 1	k: 3090000	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KRTAP5-5   3090000 perm   4666 sec   (662 perm/sec)   p_kst 3.236246e-07   p_cons 1   p_joint 4.983819e-05

Joint ci ratio: 3.179461e-01	ci left: 4.125055e-05	ci right 5.712777e-05	k: 151	n:3100000
Cons ci ratio: 1.264515e-06	ci left: 9.999988e-01	ci right 1	k: 3100000	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KRTAP5-5   3100000 perm   4694 sec   (660 perm/sec)   p_kst 3.225806e-07   p_cons 1   p_joint 4.870968e-05

Joint ci ratio: 3.189973e-01	ci left: 4.082206e-05	ci right 5.659692e-05	k: 150	n:3110000
Cons ci ratio: 1.260449e-06	ci left: 9.999988e-01	ci right 1	k: 3110000	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KRTAP5-5   3110000 perm   4722 sec   (659 perm/sec)   p_kst 3.215434e-07   p_cons 1   p_joint 4.823151e-05

Joint ci ratio: 3.189973e-01	ci left: 4.069122e-05	ci right 5.641552e-05	k: 150	n:3120000
Cons ci ratio: 1.256409e-06	ci left: 9.999988e-01	ci right 1	k: 3120000	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KRTAP5-5   3120000 perm   4750 sec   (657 perm/sec)   p_kst 3.205128e-07   p_cons 1   p_joint 4.807692e-05

Joint ci ratio: 3.289516e-01	ci left: 3.791957e-05	ci right 5.312692e-05	k: 141	n:3130000
Cons ci ratio: 1.252395e-06	ci left: 9.999988e-01	ci right 1	k: 3130000	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KRTAP5-5   3130000 perm   4777 sec   (655 perm/sec)   p_kst 3.194888e-07   p_cons 1   p_joint 4.504792e-05

Joint ci ratio: 3.277994e-01	ci left: 3.809103e-05	ci right 5.330236e-05	k: 142	n:3140000
Cons ci ratio: 1.248407e-06	ci left: 9.999988e-01	ci right 1	k: 3140000	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KRTAP5-5   3140000 perm   4806 sec   (653 perm/sec)   p_kst 3.184713e-07   p_cons 1   p_joint 4.522293e-05

Joint ci ratio: 3.266591e-01	ci left: 3.826149e-05	ci right 5.347659e-05	k: 143	n:3150000
Cons ci ratio: 1.244444e-06	ci left: 9.999988e-01	ci right 1	k: 3150000	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KRTAP5-5   3150000 perm   4835 sec   (652 perm/sec)   p_kst 3.174603e-07   p_cons 1   p_joint 4.539683e-05

Joint ci ratio: 3.255308e-01	ci left: 3.843096e-05	ci right 5.364963e-05	k: 144	n:3160000
Cons ci ratio: 1.240506e-06	ci left: 9.999988e-01	ci right 1	k: 3160000	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KRTAP5-5   3160000 perm   4863 sec   (650 perm/sec)   p_kst 3.164557e-07   p_cons 1   p_joint 4.556962e-05

Joint ci ratio: 3.255308e-01	ci left: 3.830973e-05	ci right 5.348039e-05	k: 144	n:3170000
Cons ci ratio: 1.236592e-06	ci left: 9.999988e-01	ci right 1	k: 3170000	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KRTAP5-5   3170000 perm   4892 sec   (648 perm/sec)   p_kst 3.154574e-07   p_cons 1   p_joint 4.542587e-05

Joint ci ratio: 3.255308e-01	ci left: 3.818926e-05	ci right 5.331221e-05	k: 144	n:3180000
Cons ci ratio: 1.232704e-06	ci left: 9.999988e-01	ci right 1	k: 3180000	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KRTAP5-5   3180000 perm   4921 sec   (646 perm/sec)   p_kst 3.144654e-07   p_cons 1   p_joint 4.528302e-05

Joint ci ratio: 3.255308e-01	ci left: 3.806954e-05	ci right 5.314509e-05	k: 144	n:3190000
Cons ci ratio: 1.228839e-06	ci left: 9.999988e-01	ci right 1	k: 3190000	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KRTAP5-5   3190000 perm   4950 sec   (644 perm/sec)   p_kst 3.134796e-07   p_cons 1   p_joint 4.514107e-05

Joint ci ratio: 3.244141e-01	ci left: 3.823758e-05	ci right 5.331691e-05	k: 145	n:3200000
Cons ci ratio: 1.224999e-06	ci left: 9.999988e-01	ci right 1	k: 3200000	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KRTAP5-5   3200000 perm   4979 sec   (643 perm/sec)   p_kst 3.125000e-07   p_cons 1   p_joint 4.531250e-05

Joint ci ratio: 3.233087e-01	ci left: 3.840467e-05	ci right 5.348758e-05	k: 146	n:3210000
Cons ci ratio: 1.221183e-06	ci left: 9.999989e-01	ci right 1	k: 3210000	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KRTAP5-5   3210000 perm   5007 sec   (641 perm/sec)   p_kst 3.115265e-07   p_cons 1   p_joint 4.548287e-05

Joint ci ratio: 3.233087e-01	ci left: 3.828540e-05	ci right 5.332147e-05	k: 146	n:3220000
Cons ci ratio: 1.217391e-06	ci left: 9.999989e-01	ci right 1	k: 3220000	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KRTAP5-5   3220000 perm   5036 sec   (639 perm/sec)   p_kst 3.105590e-07   p_cons 1   p_joint 4.534161e-05

Joint ci ratio: 3.244141e-01	ci left: 3.788243e-05	ci right 5.282171e-05	k: 145	n:3230000
Cons ci ratio: 1.213622e-06	ci left: 9.999989e-01	ci right 1	k: 3230000	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KRTAP5-5   3230000 perm   5065 sec   (638 perm/sec)   p_kst 3.095975e-07   p_cons 1   p_joint 4.489164e-05

Joint ci ratio: 3.233088e-01	ci left: 3.804907e-05	ci right 5.299233e-05	k: 146	n:3240000
Cons ci ratio: 1.209876e-06	ci left: 9.999989e-01	ci right 1	k: 3240000	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KRTAP5-5   3240000 perm   5094 sec   (636 perm/sec)   p_kst 3.086420e-07   p_cons 1   p_joint 4.506173e-05

Joint ci ratio: 3.233088e-01	ci left: 3.793199e-05	ci right 5.282928e-05	k: 146	n:3250000
Cons ci ratio: 1.206153e-06	ci left: 9.999989e-01	ci right 1	k: 3250000	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KRTAP5-5   3250000 perm   5123 sec   (634 perm/sec)   p_kst 3.076923e-07   p_cons 1   p_joint 4.492308e-05

Joint ci ratio: 3.266594e-01	ci left: 3.697045e-05	ci right 5.167217e-05	k: 143	n:3260000
Cons ci ratio: 1.202453e-06	ci left: 9.999989e-01	ci right 1	k: 3260000	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KRTAP5-5   3260000 perm   5152 sec   (633 perm/sec)   p_kst 3.067485e-07   p_cons 1   p_joint 4.386503e-05

Joint ci ratio: 3.255310e-01	ci left: 3.713817e-05	ci right 5.184491e-05	k: 144	n:3270000
Cons ci ratio: 1.198776e-06	ci left: 9.999989e-01	ci right 1	k: 3270000	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KRTAP5-5   3270000 perm   5183 sec   (631 perm/sec)   p_kst 3.058104e-07   p_cons 1   p_joint 4.403670e-05

Joint ci ratio: 3.255310e-01	ci left: 3.702495e-05	ci right 5.168685e-05	k: 144	n:3280000
Cons ci ratio: 1.195121e-06	ci left: 9.999989e-01	ci right 1	k: 3280000	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KRTAP5-5   3280000 perm   5212 sec   (629 perm/sec)   p_kst 3.048780e-07   p_cons 1   p_joint 4.390244e-05

Joint ci ratio: 3.255311e-01	ci left: 3.691241e-05	ci right 5.152974e-05	k: 144	n:3290000
Cons ci ratio: 1.191489e-06	ci left: 9.999989e-01	ci right 1	k: 3290000	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KRTAP5-5   3290000 perm   5242 sec   (628 perm/sec)   p_kst 3.039514e-07   p_cons 1   p_joint 4.376900e-05

Joint ci ratio: 3.255311e-01	ci left: 3.680055e-05	ci right 5.137359e-05	k: 144	n:3300000
Cons ci ratio: 1.187878e-06	ci left: 9.999989e-01	ci right 1	k: 3300000	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KRTAP5-5   3300000 perm   5271 sec   (626 perm/sec)   p_kst 3.030303e-07   p_cons 1   p_joint 4.363636e-05

Joint ci ratio: 3.255311e-01	ci left: 3.668937e-05	ci right 5.121839e-05	k: 144	n:3310000
Cons ci ratio: 1.184289e-06	ci left: 9.999989e-01	ci right 1	k: 3310000	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KRTAP5-5   3310000 perm   5301 sec   (624 perm/sec)   p_kst 3.021148e-07   p_cons 1   p_joint 4.350453e-05

Joint ci ratio: 3.255311e-01	ci left: 3.657886e-05	ci right 5.106411e-05	k: 144	n:3320000
Cons ci ratio: 1.180722e-06	ci left: 9.999989e-01	ci right 1	k: 3320000	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KRTAP5-5   3320000 perm   5331 sec   (623 perm/sec)   p_kst 3.012048e-07   p_cons 1   p_joint 4.337349e-05

Joint ci ratio: 3.244143e-01	ci left: 3.674482e-05	ci right 5.123548e-05	k: 145	n:3330000
Cons ci ratio: 1.177176e-06	ci left: 9.999989e-01	ci right 1	k: 3330000	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KRTAP5-5   3330000 perm   5361 sec   (621 perm/sec)   p_kst 3.003003e-07   p_cons 1   p_joint 4.354354e-05

Joint ci ratio: 3.244144e-01	ci left: 3.663480e-05	ci right 5.108208e-05	k: 145	n:3340000
Cons ci ratio: 1.173652e-06	ci left: 9.999989e-01	ci right 1	k: 3340000	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KRTAP5-5   3340000 perm   5391 sec   (620 perm/sec)   p_kst 2.994012e-07   p_cons 1   p_joint 4.341317e-05

Joint ci ratio: 3.244144e-01	ci left: 3.652545e-05	ci right 5.092960e-05	k: 145	n:3350000
Cons ci ratio: 1.170149e-06	ci left: 9.999989e-01	ci right 1	k: 3350000	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KRTAP5-5   3350000 perm   5421 sec   (618 perm/sec)   p_kst 2.985075e-07   p_cons 1   p_joint 4.328358e-05

Joint ci ratio: 3.244144e-01	ci left: 3.641674e-05	ci right 5.077802e-05	k: 145	n:3360000
Cons ci ratio: 1.166666e-06	ci left: 9.999989e-01	ci right 1	k: 3360000	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KRTAP5-5   3360000 perm   5451 sec   (616 perm/sec)   p_kst 2.976190e-07   p_cons 1   p_joint 4.315476e-05

Joint ci ratio: 3.233091e-01	ci left: 3.658129e-05	ci right 5.094812e-05	k: 146	n:3370000
Cons ci ratio: 1.163204e-06	ci left: 9.999989e-01	ci right 1	k: 3370000	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KRTAP5-5   3370000 perm   5481 sec   (615 perm/sec)   p_kst 2.967359e-07   p_cons 1   p_joint 4.332344e-05

Joint ci ratio: 3.233091e-01	ci left: 3.647306e-05	ci right 5.079739e-05	k: 146	n:3380000
Cons ci ratio: 1.159763e-06	ci left: 9.999989e-01	ci right 1	k: 3380000	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KRTAP5-5   3380000 perm   5511 sec   (613 perm/sec)   p_kst 2.958580e-07   p_cons 1   p_joint 4.319527e-05

Joint ci ratio: 3.233091e-01	ci left: 3.636547e-05	ci right 5.064754e-05	k: 146	n:3390000
Cons ci ratio: 1.156342e-06	ci left: 9.999989e-01	ci right 1	k: 3390000	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KRTAP5-5   3390000 perm   5541 sec   (612 perm/sec)   p_kst 2.949853e-07   p_cons 1   p_joint 4.306785e-05

Joint ci ratio: 3.222150e-01	ci left: 3.652881e-05	ci right 5.081644e-05	k: 147	n:3400000
Cons ci ratio: 1.152940e-06	ci left: 9.999989e-01	ci right 1	k: 3400000	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KRTAP5-5   3400000 perm   5571 sec   (610 perm/sec)   p_kst 2.941176e-07   p_cons 1   p_joint 4.323529e-05

Joint ci ratio: 3.266597e-01	ci left: 3.534418e-05	ci right 4.939921e-05	k: 143	n:3410000
Cons ci ratio: 1.149559e-06	ci left: 9.999989e-01	ci right 1	k: 3410000	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KRTAP5-5   3410000 perm   5602 sec   (609 perm/sec)   p_kst 2.932551e-07   p_cons 1   p_joint 4.193548e-05

Joint ci ratio: 3.244145e-01	ci left: 3.577785e-05	ci right 4.988718e-05	k: 145	n:3420000
Cons ci ratio: 1.146198e-06	ci left: 9.999989e-01	ci right 1	k: 3420000	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KRTAP5-5   3420000 perm   5633 sec   (607 perm/sec)   p_kst 2.923977e-07   p_cons 1   p_joint 4.239766e-05

Joint ci ratio: 3.244146e-01	ci left: 3.567354e-05	ci right 4.974174e-05	k: 145	n:3430000
Cons ci ratio: 1.142856e-06	ci left: 9.999989e-01	ci right 1	k: 3430000	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KRTAP5-5   3430000 perm   5664 sec   (606 perm/sec)   p_kst 2.915452e-07   p_cons 1   p_joint 4.227405e-05

Joint ci ratio: 3.244146e-01	ci left: 3.556984e-05	ci right 4.959714e-05	k: 145	n:3440000
Cons ci ratio: 1.139534e-06	ci left: 9.999989e-01	ci right 1	k: 3440000	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KRTAP5-5   3440000 perm   5694 sec   (604 perm/sec)   p_kst 2.906977e-07   p_cons 1   p_joint 4.215116e-05

Joint ci ratio: 3.233092e-01	ci left: 3.573303e-05	ci right 4.976672e-05	k: 146	n:3450000
Cons ci ratio: 1.136231e-06	ci left: 9.999989e-01	ci right 1	k: 3450000	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KRTAP5-5   3450000 perm   5725 sec   (603 perm/sec)   p_kst 2.898551e-07   p_cons 1   p_joint 4.231884e-05

Joint ci ratio: 3.222151e-01	ci left: 3.589536e-05	ci right 4.993524e-05	k: 147	n:3460000
Cons ci ratio: 1.132947e-06	ci left: 9.999989e-01	ci right 1	k: 3460000	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KRTAP5-5   3460000 perm   5756 sec   (601 perm/sec)   p_kst 2.890173e-07   p_cons 1   p_joint 4.248555e-05

Joint ci ratio: 3.222151e-01	ci left: 3.579191e-05	ci right 4.979133e-05	k: 147	n:3470000
Cons ci ratio: 1.129682e-06	ci left: 9.999989e-01	ci right 1	k: 3470000	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KRTAP5-5   3470000 perm   5787 sec   (600 perm/sec)   p_kst 2.881844e-07   p_cons 1   p_joint 4.236311e-05

Joint ci ratio: 3.211320e-01	ci left: 3.595322e-05	ci right 4.995873e-05	k: 148	n:3480000
Cons ci ratio: 1.126436e-06	ci left: 9.999989e-01	ci right 1	k: 3480000	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KRTAP5-5   3480000 perm   5819 sec   (598 perm/sec)   p_kst 2.873563e-07   p_cons 1   p_joint 4.252874e-05

Joint ci ratio: 3.211320e-01	ci left: 3.585020e-05	ci right 4.981558e-05	k: 148	n:3490000
Cons ci ratio: 1.123209e-06	ci left: 9.999989e-01	ci right 1	k: 3490000	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KRTAP5-5   3490000 perm   5850 sec   (597 perm/sec)   p_kst 2.865330e-07   p_cons 1   p_joint 4.240688e-05

Joint ci ratio: 3.200598e-01	ci left: 3.601050e-05	ci right 4.998188e-05	k: 149	n:3500000
Cons ci ratio: 1.119999e-06	ci left: 9.999989e-01	ci right 1	k: 3500000	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KRTAP5-5   3500000 perm   5881 sec   (595 perm/sec)   p_kst 2.857143e-07   p_cons 1   p_joint 4.257143e-05

Joint ci ratio: 3.179471e-01	ci left: 3.643209e-05	ci right 5.045475e-05	k: 151	n:3510000
Cons ci ratio: 1.116808e-06	ci left: 9.999989e-01	ci right 1	k: 3510000	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KRTAP5-5   3510000 perm   5913 sec   (594 perm/sec)   p_kst 2.849003e-07   p_cons 1   p_joint 4.301994e-05

Joint ci ratio: 3.179471e-01	ci left: 3.632859e-05	ci right 5.031141e-05	k: 151	n:3520000
Cons ci ratio: 1.113636e-06	ci left: 9.999990e-01	ci right 1	k: 3520000	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KRTAP5-5   3520000 perm   5945 sec   (592 perm/sec)   p_kst 2.840909e-07   p_cons 1   p_joint 4.289773e-05

Joint ci ratio: 3.179471e-01	ci left: 3.622568e-05	ci right 5.016889e-05	k: 151	n:3530000
Cons ci ratio: 1.110481e-06	ci left: 9.999990e-01	ci right 1	k: 3530000	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KRTAP5-5   3530000 perm   5977 sec   (591 perm/sec)   p_kst 2.832861e-07   p_cons 1   p_joint 4.277620e-05

Joint ci ratio: 3.169063e-01	ci left: 3.638333e-05	ci right 5.033208e-05	k: 152	n:3540000
Cons ci ratio: 1.107344e-06	ci left: 9.999990e-01	ci right 1	k: 3540000	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KRTAP5-5   3540000 perm   6008 sec   (589 perm/sec)   p_kst 2.824859e-07   p_cons 1   p_joint 4.293785e-05

Joint ci ratio: 3.169063e-01	ci left: 3.628084e-05	ci right 5.019030e-05	k: 152	n:3550000
Cons ci ratio: 1.104225e-06	ci left: 9.999990e-01	ci right 1	k: 3550000	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KRTAP5-5   3550000 perm   6040 sec   (588 perm/sec)   p_kst 2.816901e-07   p_cons 1   p_joint 4.281690e-05

Joint ci ratio: 3.148551e-01	ci left: 3.669619e-05	ci right 5.065551e-05	k: 154	n:3560000
Cons ci ratio: 1.101123e-06	ci left: 9.999990e-01	ci right 1	k: 3560000	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KRTAP5-5   3560000 perm   6071 sec   (586 perm/sec)   p_kst 2.808989e-07   p_cons 1   p_joint 4.325843e-05

Joint ci ratio: 3.148551e-01	ci left: 3.659340e-05	ci right 5.051362e-05	k: 154	n:3570000
Cons ci ratio: 1.098039e-06	ci left: 9.999990e-01	ci right 1	k: 3570000	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KRTAP5-5   3570000 perm   6103 sec   (585 perm/sec)   p_kst 2.801120e-07   p_cons 1   p_joint 4.313725e-05

Joint ci ratio: 3.138443e-01	ci left: 3.674848e-05	ci right 5.067381e-05	k: 155	n:3580000
Cons ci ratio: 1.094971e-06	ci left: 9.999990e-01	ci right 1	k: 3580000	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KRTAP5-5   3580000 perm   6135 sec   (584 perm/sec)   p_kst 2.793296e-07   p_cons 1   p_joint 4.329609e-05

Joint ci ratio: 3.138443e-01	ci left: 3.664612e-05	ci right 5.053266e-05	k: 155	n:3590000
Cons ci ratio: 1.091921e-06	ci left: 9.999990e-01	ci right 1	k: 3590000	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KRTAP5-5   3590000 perm   6168 sec   (582 perm/sec)   p_kst 2.785515e-07   p_cons 1   p_joint 4.317549e-05

Joint ci ratio: 3.128432e-01	ci left: 3.680026e-05	ci right 5.069184e-05	k: 156	n:3600000
Cons ci ratio: 1.088888e-06	ci left: 9.999990e-01	ci right 1	k: 3600000	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KRTAP5-5   3600000 perm   6200 sec   (581 perm/sec)   p_kst 2.777778e-07   p_cons 1   p_joint 4.333333e-05

Joint ci ratio: 3.128432e-01	ci left: 3.669832e-05	ci right 5.055142e-05	k: 156	n:3610000
Cons ci ratio: 1.085872e-06	ci left: 9.999990e-01	ci right 1	k: 3610000	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KRTAP5-5   3610000 perm   6232 sec   (579 perm/sec)   p_kst 2.770083e-07   p_cons 1   p_joint 4.321330e-05

Joint ci ratio: 3.118516e-01	ci left: 3.685154e-05	ci right 5.070960e-05	k: 157	n:3620000
Cons ci ratio: 1.082872e-06	ci left: 9.999990e-01	ci right 1	k: 3620000	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KRTAP5-5   3620000 perm   6264 sec   (578 perm/sec)   p_kst 2.762431e-07   p_cons 1   p_joint 4.337017e-05

Joint ci ratio: 3.373736e-01	ci left: 3.092936e-05	ci right 4.372012e-05	k: 134	n:3630000
Cons ci ratio: 1.079889e-06	ci left: 9.999990e-01	ci right 1	k: 3630000	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KRTAP5-5   3630000 perm   6296 sec   (577 perm/sec)   p_kst 2.754821e-07   p_cons 1   p_joint 3.691460e-05

Joint ci ratio: 3.373736e-01	ci left: 3.084439e-05	ci right 4.360001e-05	k: 134	n:3640000
Cons ci ratio: 1.076922e-06	ci left: 9.999990e-01	ci right 1	k: 3640000	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KRTAP5-5   3640000 perm   6329 sec   (575 perm/sec)   p_kst 2.747253e-07   p_cons 1   p_joint 3.681319e-05

Joint ci ratio: 3.373736e-01	ci left: 3.075988e-05	ci right 4.348056e-05	k: 134	n:3650000
Cons ci ratio: 1.073972e-06	ci left: 9.999990e-01	ci right 1	k: 3650000	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KRTAP5-5   3650000 perm   6361 sec   (574 perm/sec)   p_kst 2.739726e-07   p_cons 1   p_joint 3.671233e-05

Joint ci ratio: 3.373736e-01	ci left: 3.067584e-05	ci right 4.336176e-05	k: 134	n:3660000
Cons ci ratio: 1.071038e-06	ci left: 9.999990e-01	ci right 1	k: 3660000	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KRTAP5-5   3660000 perm   6393 sec   (573 perm/sec)   p_kst 2.732240e-07   p_cons 1   p_joint 3.661202e-05

Joint ci ratio: 3.373736e-01	ci left: 3.059225e-05	ci right 4.324361e-05	k: 134	n:3670000
Cons ci ratio: 1.068119e-06	ci left: 9.999990e-01	ci right 1	k: 3670000	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KRTAP5-5   3670000 perm   6426 sec   (571 perm/sec)   p_kst 2.724796e-07   p_cons 1   p_joint 3.651226e-05

Joint ci ratio: 3.373736e-01	ci left: 3.050912e-05	ci right 4.312610e-05	k: 134	n:3680000
Cons ci ratio: 1.065217e-06	ci left: 9.999990e-01	ci right 1	k: 3680000	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KRTAP5-5   3680000 perm   6459 sec   (570 perm/sec)   p_kst 2.717391e-07   p_cons 1   p_joint 3.641304e-05

Joint ci ratio: 3.373737e-01	ci left: 3.042644e-05	ci right 4.300923e-05	k: 134	n:3690000
Cons ci ratio: 1.062330e-06	ci left: 9.999990e-01	ci right 1	k: 3690000	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KRTAP5-5   3690000 perm   6492 sec   (568 perm/sec)   p_kst 2.710027e-07   p_cons 1   p_joint 3.631436e-05

Joint ci ratio: 3.373737e-01	ci left: 3.034421e-05	ci right 4.289299e-05	k: 134	n:3700000
Cons ci ratio: 1.059459e-06	ci left: 9.999990e-01	ci right 1	k: 3700000	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KRTAP5-5   3700000 perm   6524 sec   (567 perm/sec)   p_kst 2.702703e-07   p_cons 1   p_joint 3.621622e-05

Joint ci ratio: 3.373737e-01	ci left: 3.026242e-05	ci right 4.277738e-05	k: 134	n:3710000
Cons ci ratio: 1.056603e-06	ci left: 9.999990e-01	ci right 1	k: 3710000	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KRTAP5-5   3710000 perm   6557 sec   (566 perm/sec)   p_kst 2.695418e-07   p_cons 1   p_joint 3.611860e-05

Joint ci ratio: 3.373737e-01	ci left: 3.018107e-05	ci right 4.266238e-05	k: 134	n:3720000
Cons ci ratio: 1.053763e-06	ci left: 9.999990e-01	ci right 1	k: 3720000	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KRTAP5-5   3720000 perm   6590 sec   (564 perm/sec)   p_kst 2.688172e-07   p_cons 1   p_joint 3.602151e-05

Joint ci ratio: 3.373737e-01	ci left: 3.010015e-05	ci right 4.254801e-05	k: 134	n:3730000
Cons ci ratio: 1.050938e-06	ci left: 9.999990e-01	ci right 1	k: 3730000	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KRTAP5-5   3730000 perm   6623 sec   (563 perm/sec)   p_kst 2.680965e-07   p_cons 1   p_joint 3.592493e-05

Joint ci ratio: 3.373737e-01	ci left: 3.001967e-05	ci right 4.243424e-05	k: 134	n:3740000
Cons ci ratio: 1.048128e-06	ci left: 9.999990e-01	ci right 1	k: 3740000	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KRTAP5-5   3740000 perm   6657 sec   (562 perm/sec)   p_kst 2.673797e-07   p_cons 1   p_joint 3.582888e-05

Joint ci ratio: 3.373738e-01	ci left: 2.993962e-05	ci right 4.232109e-05	k: 134	n:3750000
Cons ci ratio: 1.045333e-06	ci left: 9.999990e-01	ci right 1	k: 3750000	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KRTAP5-5   3750000 perm   6691 sec   (560 perm/sec)   p_kst 2.666667e-07   p_cons 1   p_joint 3.573333e-05

Joint ci ratio: 3.373738e-01	ci left: 2.985999e-05	ci right 4.220853e-05	k: 134	n:3760000
Cons ci ratio: 1.042553e-06	ci left: 9.999990e-01	ci right 1	k: 3760000	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KRTAP5-5   3760000 perm   6724 sec   (559 perm/sec)   p_kst 2.659574e-07   p_cons 1   p_joint 3.563830e-05

Joint ci ratio: 3.361311e-01	ci left: 3.002361e-05	ci right 4.238417e-05	k: 135	n:3770000
Cons ci ratio: 1.039787e-06	ci left: 9.999990e-01	ci right 1	k: 3770000	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KRTAP5-5   3770000 perm   6757 sec   (558 perm/sec)   p_kst 2.652520e-07   p_cons 1   p_joint 3.580902e-05

Joint ci ratio: 3.349021e-01	ci left: 3.018645e-05	ci right 4.255880e-05	k: 136	n:3780000
Cons ci ratio: 1.037036e-06	ci left: 9.999990e-01	ci right 1	k: 3780000	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KRTAP5-5   3780000 perm   6791 sec   (557 perm/sec)   p_kst 2.645503e-07   p_cons 1   p_joint 3.597884e-05

Joint ci ratio: 3.349021e-01	ci left: 3.010680e-05	ci right 4.244650e-05	k: 136	n:3790000
Cons ci ratio: 1.034300e-06	ci left: 9.999990e-01	ci right 1	k: 3790000	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KRTAP5-5   3790000 perm   6824 sec   (555 perm/sec)   p_kst 2.638522e-07   p_cons 1   p_joint 3.588391e-05

Joint ci ratio: 3.349021e-01	ci left: 3.002757e-05	ci right 4.233480e-05	k: 136	n:3800000
Cons ci ratio: 1.031578e-06	ci left: 9.999990e-01	ci right 1	k: 3800000	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KRTAP5-5   3800000 perm   6858 sec   (554 perm/sec)   p_kst 2.631579e-07   p_cons 1   p_joint 3.578947e-05

Joint ci ratio: 3.361312e-01	ci left: 2.970840e-05	ci right 4.193919e-05	k: 135	n:3810000
Cons ci ratio: 1.028871e-06	ci left: 9.999990e-01	ci right 1	k: 3810000	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KRTAP5-5   3810000 perm   6892 sec   (553 perm/sec)   p_kst 2.624672e-07   p_cons 1   p_joint 3.543307e-05

Joint ci ratio: 3.361312e-01	ci left: 2.963063e-05	ci right 4.182940e-05	k: 135	n:3820000
Cons ci ratio: 1.026177e-06	ci left: 9.999990e-01	ci right 1	k: 3820000	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KRTAP5-5   3820000 perm   6926 sec   (552 perm/sec)   p_kst 2.617801e-07   p_cons 1   p_joint 3.534031e-05

Joint ci ratio: 3.361312e-01	ci left: 2.955327e-05	ci right 4.172019e-05	k: 135	n:3830000
Cons ci ratio: 1.023498e-06	ci left: 9.999990e-01	ci right 1	k: 3830000	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KRTAP5-5   3830000 perm   6959 sec   (550 perm/sec)   p_kst 2.610966e-07   p_cons 1   p_joint 3.524804e-05

Joint ci ratio: 3.361312e-01	ci left: 2.947630e-05	ci right 4.161154e-05	k: 135	n:3840000
Cons ci ratio: 1.020833e-06	ci left: 9.999990e-01	ci right 1	k: 3840000	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KRTAP5-5   3840000 perm   6994 sec   (549 perm/sec)   p_kst 2.604167e-07   p_cons 1   p_joint 3.515625e-05

Joint ci ratio: 3.361312e-01	ci left: 2.939974e-05	ci right 4.150346e-05	k: 135	n:3850000
Cons ci ratio: 1.018181e-06	ci left: 9.999990e-01	ci right 1	k: 3850000	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KRTAP5-5   3850000 perm   7029 sec   (548 perm/sec)   p_kst 2.597403e-07   p_cons 1   p_joint 3.506494e-05

Joint ci ratio: 3.361313e-01	ci left: 2.932358e-05	ci right 4.139594e-05	k: 135	n:3860000
Cons ci ratio: 1.015544e-06	ci left: 9.999990e-01	ci right 1	k: 3860000	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KRTAP5-5   3860000 perm   7063 sec   (546 perm/sec)   p_kst 2.590674e-07   p_cons 1   p_joint 3.497409e-05

Joint ci ratio: 3.349022e-01	ci left: 2.948444e-05	ci right 4.156906e-05	k: 136	n:3870000
Cons ci ratio: 1.012919e-06	ci left: 9.999990e-01	ci right 1	k: 3870000	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KRTAP5-5   3870000 perm   7097 sec   (545 perm/sec)   p_kst 2.583979e-07   p_cons 1   p_joint 3.514212e-05

Joint ci ratio: 3.349022e-01	ci left: 2.940845e-05	ci right 4.146192e-05	k: 136	n:3880000
Cons ci ratio: 1.010309e-06	ci left: 9.999990e-01	ci right 1	k: 3880000	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KRTAP5-5   3880000 perm   7132 sec   (544 perm/sec)   p_kst 2.577320e-07   p_cons 1   p_joint 3.505155e-05

Joint ci ratio: 3.349023e-01	ci left: 2.933285e-05	ci right 4.135534e-05	k: 136	n:3890000
Cons ci ratio: 1.007712e-06	ci left: 9.999991e-01	ci right 1	k: 3890000	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KRTAP5-5   3890000 perm   7166 sec   (543 perm/sec)   p_kst 2.570694e-07   p_cons 1   p_joint 3.496144e-05

Joint ci ratio: 3.336866e-01	ci left: 2.949252e-05	ci right 4.152715e-05	k: 137	n:3900000
Cons ci ratio: 1.005128e-06	ci left: 9.999991e-01	ci right 1	k: 3900000	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KRTAP5-5   3900000 perm   7201 sec   (542 perm/sec)   p_kst 2.564103e-07   p_cons 1   p_joint 3.512821e-05

Joint ci ratio: 3.373740e-01	ci left: 2.871446e-05	ci right 4.058928e-05	k: 134	n:3910000
Cons ci ratio: 1.002557e-06	ci left: 9.999991e-01	ci right 1	k: 3910000	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KRTAP5-5   3910000 perm   7235 sec   (540 perm/sec)   p_kst 2.557545e-07   p_cons 1   p_joint 3.427110e-05

Joint ci ratio: 3.492157e-01	ci left: 2.654315e-05	ci right 3.799270e-05	k: 125	n:3920000
Cons ci ratio: 9.999995e-07	ci left: 9.999991e-01	ci right 1	k: 3920000	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KRTAP5-5   3920000 perm   7270 sec   (539 perm/sec)   p_kst 2.551020e-07   p_cons 1   p_joint 3.188776e-05

Joint ci ratio: 3.492157e-01	ci left: 2.647561e-05	ci right 3.789603e-05	k: 125	n:3930000
Cons ci ratio: 9.974550e-07	ci left: 9.999991e-01	ci right 1	k: 3930000	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KRTAP5-5   3930000 perm   7305 sec   (538 perm/sec)   p_kst 2.544529e-07   p_cons 1   p_joint 3.180662e-05

Joint ci ratio: 3.492157e-01	ci left: 2.640842e-05	ci right 3.779985e-05	k: 125	n:3940000
Cons ci ratio: 9.949234e-07	ci left: 9.999991e-01	ci right 1	k: 3940000	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KRTAP5-5   3940000 perm   7341 sec   (537 perm/sec)   p_kst 2.538071e-07   p_cons 1   p_joint 3.172589e-05

Joint ci ratio: 3.492157e-01	ci left: 2.634156e-05	ci right 3.770415e-05	k: 125	n:3950000
Cons ci ratio: 9.924046e-07	ci left: 9.999991e-01	ci right 1	k: 3950000	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KRTAP5-5   3950000 perm   7376 sec   (536 perm/sec)   p_kst 2.531646e-07   p_cons 1   p_joint 3.164557e-05

Joint ci ratio: 3.492158e-01	ci left: 2.627504e-05	ci right 3.760894e-05	k: 125	n:3960000
Cons ci ratio: 9.898985e-07	ci left: 9.999991e-01	ci right 1	k: 3960000	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KRTAP5-5   3960000 perm   7411 sec   (534 perm/sec)   p_kst 2.525253e-07   p_cons 1   p_joint 3.156566e-05

Joint ci ratio: 3.492158e-01	ci left: 2.620886e-05	ci right 3.751421e-05	k: 125	n:3970000
Cons ci ratio: 9.874050e-07	ci left: 9.999991e-01	ci right 1	k: 3970000	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KRTAP5-5   3970000 perm   7446 sec   (533 perm/sec)   p_kst 2.518892e-07   p_cons 1   p_joint 3.148615e-05

Joint ci ratio: 3.478382e-01	ci left: 2.637227e-05	ci right 3.769312e-05	k: 126	n:3980000
Cons ci ratio: 9.849241e-07	ci left: 9.999991e-01	ci right 1	k: 3980000	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KRTAP5-5   3980000 perm   7483 sec   (532 perm/sec)   p_kst 2.512563e-07   p_cons 1   p_joint 3.165829e-05

Joint ci ratio: 3.492158e-01	ci left: 2.607748e-05	ci right 3.732617e-05	k: 125	n:3990000
Cons ci ratio: 9.824556e-07	ci left: 9.999991e-01	ci right 1	k: 3990000	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KRTAP5-5   3990000 perm   7517 sec   (531 perm/sec)   p_kst 2.506266e-07   p_cons 1   p_joint 3.132832e-05

Joint ci ratio: 3.492158e-01	ci left: 2.601229e-05	ci right 3.723285e-05	k: 125	n:4000000
Cons ci ratio: 9.799995e-07	ci left: 9.999991e-01	ci right 1	k: 4000000	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KRTAP5-5   4000000 perm   7553 sec   (530 perm/sec)   p_kst 2.500000e-07   p_cons 1   p_joint 3.125000e-05

Joint ci ratio: 3.478382e-01	ci left: 2.617497e-05	ci right 3.741112e-05	k: 126	n:4010000
Cons ci ratio: 9.775556e-07	ci left: 9.999991e-01	ci right 1	k: 4010000	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KRTAP5-5   4010000 perm   7589 sec   (528 perm/sec)   p_kst 2.493766e-07   p_cons 1   p_joint 3.142145e-05

Joint ci ratio: 3.478382e-01	ci left: 2.610986e-05	ci right 3.731806e-05	k: 126	n:4020000
Cons ci ratio: 9.751239e-07	ci left: 9.999991e-01	ci right 1	k: 4020000	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KRTAP5-5   4020000 perm   7624 sec   (527 perm/sec)   p_kst 2.487562e-07   p_cons 1   p_joint 3.134328e-05

Joint ci ratio: 3.478382e-01	ci left: 2.604507e-05	ci right 3.722546e-05	k: 126	n:4030000
Cons ci ratio: 9.727042e-07	ci left: 9.999991e-01	ci right 1	k: 4030000	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KRTAP5-5   4030000 perm   7660 sec   (526 perm/sec)   p_kst 2.481390e-07   p_cons 1   p_joint 3.126551e-05

Joint ci ratio: 3.464768e-01	ci left: 2.620654e-05	ci right 3.740234e-05	k: 127	n:4040000
Cons ci ratio: 9.702965e-07	ci left: 9.999991e-01	ci right 1	k: 4040000	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KRTAP5-5   4040000 perm   7695 sec   (525 perm/sec)   p_kst 2.475248e-07   p_cons 1   p_joint 3.143564e-05

Joint ci ratio: 3.464768e-01	ci left: 2.614184e-05	ci right 3.730999e-05	k: 127	n:4050000
Cons ci ratio: 9.679008e-07	ci left: 9.999991e-01	ci right 1	k: 4050000	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KRTAP5-5   4050000 perm   7732 sec   (524 perm/sec)   p_kst 2.469136e-07   p_cons 1   p_joint 3.135802e-05

Joint ci ratio: 3.464768e-01	ci left: 2.607745e-05	ci right 3.721809e-05	k: 127	n:4060000
Cons ci ratio: 9.655168e-07	ci left: 9.999991e-01	ci right 1	k: 4060000	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KRTAP5-5   4060000 perm   7768 sec   (523 perm/sec)   p_kst 2.463054e-07   p_cons 1   p_joint 3.128079e-05

Joint ci ratio: 3.464768e-01	ci left: 2.601338e-05	ci right 3.712665e-05	k: 127	n:4070000
Cons ci ratio: 9.631445e-07	ci left: 9.999991e-01	ci right 1	k: 4070000	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KRTAP5-5   4070000 perm   7804 sec   (522 perm/sec)   p_kst 2.457002e-07   p_cons 1   p_joint 3.120393e-05

Joint ci ratio: 3.464768e-01	ci left: 2.594962e-05	ci right 3.703565e-05	k: 127	n:4080000
Cons ci ratio: 9.607838e-07	ci left: 9.999991e-01	ci right 1	k: 4080000	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KRTAP5-5   4080000 perm   7840 sec   (520 perm/sec)   p_kst 2.450980e-07   p_cons 1   p_joint 3.112745e-05

Joint ci ratio: 3.451313e-01	ci left: 2.610944e-05	ci right 3.721075e-05	k: 128	n:4090000
Cons ci ratio: 9.584347e-07	ci left: 9.999991e-01	ci right 1	k: 4090000	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KRTAP5-5   4090000 perm   7877 sec   (519 perm/sec)   p_kst 2.444988e-07   p_cons 1   p_joint 3.129584e-05

Joint ci ratio: 3.438013e-01	ci left: 2.626856e-05	ci right 3.738491e-05	k: 129	n:4100000
Cons ci ratio: 9.560971e-07	ci left: 9.999991e-01	ci right 1	k: 4100000	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KRTAP5-5   4100000 perm   7913 sec   (518 perm/sec)   p_kst 2.439024e-07   p_cons 1   p_joint 3.146341e-05

Joint ci ratio: 3.438013e-01	ci left: 2.620465e-05	ci right 3.729395e-05	k: 129	n:4110000
Cons ci ratio: 9.537708e-07	ci left: 9.999991e-01	ci right 1	k: 4110000	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KRTAP5-5   4110000 perm   7950 sec   (517 perm/sec)   p_kst 2.433090e-07   p_cons 1   p_joint 3.138686e-05

Joint ci ratio: 3.438013e-01	ci left: 2.614104e-05	ci right 3.720343e-05	k: 129	n:4120000
Cons ci ratio: 9.514558e-07	ci left: 9.999991e-01	ci right 1	k: 4120000	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KRTAP5-5   4120000 perm   7987 sec   (516 perm/sec)   p_kst 2.427184e-07   p_cons 1   p_joint 3.131068e-05

Joint ci ratio: 3.438013e-01	ci left: 2.607775e-05	ci right 3.711335e-05	k: 129	n:4130000
Cons ci ratio: 9.491521e-07	ci left: 9.999991e-01	ci right 1	k: 4130000	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KRTAP5-5   4130000 perm   8025 sec   (515 perm/sec)   p_kst 2.421308e-07   p_cons 1   p_joint 3.123487e-05

Joint ci ratio: 3.438013e-01	ci left: 2.601476e-05	ci right 3.702371e-05	k: 129	n:4140000
Cons ci ratio: 9.468594e-07	ci left: 9.999991e-01	ci right 1	k: 4140000	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KRTAP5-5   4140000 perm   8062 sec   (514 perm/sec)   p_kst 2.415459e-07   p_cons 1   p_joint 3.115942e-05

Joint ci ratio: 3.438013e-01	ci left: 2.595207e-05	ci right 3.693449e-05	k: 129	n:4150000
Cons ci ratio: 9.445779e-07	ci left: 9.999991e-01	ci right 1	k: 4150000	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KRTAP5-5   4150000 perm   8098 sec   (512 perm/sec)   p_kst 2.409639e-07   p_cons 1   p_joint 3.108434e-05

Joint ci ratio: 3.438013e-01	ci left: 2.588969e-05	ci right 3.684571e-05	k: 129	n:4160000
Cons ci ratio: 9.423072e-07	ci left: 9.999991e-01	ci right 1	k: 4160000	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KRTAP5-5   4160000 perm   8135 sec   (511 perm/sec)   p_kst 2.403846e-07   p_cons 1   p_joint 3.100962e-05

Joint ci ratio: 3.438013e-01	ci left: 2.582760e-05	ci right 3.675735e-05	k: 129	n:4170000
Cons ci ratio: 9.400475e-07	ci left: 9.999991e-01	ci right 1	k: 4170000	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KRTAP5-5   4170000 perm   8171 sec   (510 perm/sec)   p_kst 2.398082e-07   p_cons 1   p_joint 3.093525e-05

Joint ci ratio: 3.424866e-01	ci left: 2.598443e-05	ci right 3.692919e-05	k: 130	n:4180000
Cons ci ratio: 9.377986e-07	ci left: 9.999991e-01	ci right 1	k: 4180000	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KRTAP5-5   4180000 perm   8209 sec   (509 perm/sec)   p_kst 2.392344e-07   p_cons 1   p_joint 3.110048e-05

Joint ci ratio: 3.424866e-01	ci left: 2.592242e-05	ci right 3.684105e-05	k: 130	n:4190000
Cons ci ratio: 9.355604e-07	ci left: 9.999991e-01	ci right 1	k: 4190000	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KRTAP5-5   4190000 perm   8245 sec   (508 perm/sec)   p_kst 2.386635e-07   p_cons 1   p_joint 3.102625e-05

Joint ci ratio: 3.424866e-01	ci left: 2.586070e-05	ci right 3.675333e-05	k: 130	n:4200000
Cons ci ratio: 9.333329e-07	ci left: 9.999991e-01	ci right 1	k: 4200000	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KRTAP5-5   4200000 perm   8283 sec   (507 perm/sec)   p_kst 2.380952e-07   p_cons 1   p_joint 3.095238e-05

Joint ci ratio: 3.424866e-01	ci left: 2.579927e-05	ci right 3.666603e-05	k: 130	n:4210000
Cons ci ratio: 9.311159e-07	ci left: 9.999991e-01	ci right 1	k: 4210000	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KRTAP5-5   4210000 perm   8321 sec   (506 perm/sec)   p_kst 2.375297e-07   p_cons 1   p_joint 3.087886e-05

Joint ci ratio: 3.411868e-01	ci left: 2.595476e-05	ci right 3.683638e-05	k: 131	n:4220000
Cons ci ratio: 9.289095e-07	ci left: 9.999991e-01	ci right 1	k: 4220000	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KRTAP5-5   4220000 perm   8358 sec   (505 perm/sec)   p_kst 2.369668e-07   p_cons 1   p_joint 3.104265e-05

Joint ci ratio: 3.411868e-01	ci left: 2.589340e-05	ci right 3.674929e-05	k: 131	n:4230000
Cons ci ratio: 9.267135e-07	ci left: 9.999991e-01	ci right 1	k: 4230000	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KRTAP5-5   4230000 perm   8396 sec   (504 perm/sec)   p_kst 2.364066e-07   p_cons 1   p_joint 3.096927e-05

Joint ci ratio: 3.411869e-01	ci left: 2.583233e-05	ci right 3.666262e-05	k: 131	n:4240000
Cons ci ratio: 9.245279e-07	ci left: 9.999991e-01	ci right 1	k: 4240000	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KRTAP5-5   4240000 perm   8434 sec   (503 perm/sec)   p_kst 2.358491e-07   p_cons 1   p_joint 3.089623e-05

Joint ci ratio: 3.411869e-01	ci left: 2.577155e-05	ci right 3.657636e-05	k: 131	n:4250000
Cons ci ratio: 9.223525e-07	ci left: 9.999991e-01	ci right 1	k: 4250000	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KRTAP5-5   4250000 perm   8472 sec   (502 perm/sec)   p_kst 2.352941e-07   p_cons 1   p_joint 3.082353e-05

Joint ci ratio: 3.411869e-01	ci left: 2.571105e-05	ci right 3.649050e-05	k: 131	n:4260000
Cons ci ratio: 9.201874e-07	ci left: 9.999991e-01	ci right 1	k: 4260000	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KRTAP5-5   4260000 perm   8511 sec   (501 perm/sec)   p_kst 2.347418e-07   p_cons 1   p_joint 3.075117e-05

Joint ci ratio: 3.399018e-01	ci left: 2.586501e-05	ci right 3.665918e-05	k: 132	n:4270000
Cons ci ratio: 9.180324e-07	ci left: 9.999991e-01	ci right 1	k: 4270000	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KRTAP5-5   4270000 perm   8549 sec   (499 perm/sec)   p_kst 2.341920e-07   p_cons 1   p_joint 3.091335e-05

Joint ci ratio: 3.399018e-01	ci left: 2.580457e-05	ci right 3.657353e-05	k: 132	n:4280000
Cons ci ratio: 9.158874e-07	ci left: 9.999991e-01	ci right 1	k: 4280000	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KRTAP5-5   4280000 perm   8588 sec   (498 perm/sec)   p_kst 2.336449e-07   p_cons 1   p_joint 3.084112e-05

Joint ci ratio: 3.399018e-01	ci left: 2.574442e-05	ci right 3.648828e-05	k: 132	n:4290000
Cons ci ratio: 9.137525e-07	ci left: 9.999991e-01	ci right 1	k: 4290000	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KRTAP5-5   4290000 perm   8626 sec   (497 perm/sec)   p_kst 2.331002e-07   p_cons 1   p_joint 3.076923e-05

Joint ci ratio: 3.386311e-01	ci left: 2.589730e-05	ci right 3.665572e-05	k: 133	n:4300000
Cons ci ratio: 9.116275e-07	ci left: 9.999991e-01	ci right 1	k: 4300000	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KRTAP5-5   4300000 perm   8665 sec   (496 perm/sec)   p_kst 2.325581e-07   p_cons 1   p_joint 3.093023e-05

Joint ci ratio: 3.386311e-01	ci left: 2.583721e-05	ci right 3.657067e-05	k: 133	n:4310000
Cons ci ratio: 9.095123e-07	ci left: 9.999991e-01	ci right 1	k: 4310000	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KRTAP5-5   4310000 perm   8703 sec   (495 perm/sec)   p_kst 2.320186e-07   p_cons 1   p_joint 3.085847e-05

Joint ci ratio: 3.386311e-01	ci left: 2.577740e-05	ci right 3.648601e-05	k: 133	n:4320000
Cons ci ratio: 9.074070e-07	ci left: 9.999991e-01	ci right 1	k: 4320000	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KRTAP5-5   4320000 perm   8746 sec   (494 perm/sec)   p_kst 2.314815e-07   p_cons 1   p_joint 3.078704e-05

Joint ci ratio: 3.386311e-01	ci left: 2.571787e-05	ci right 3.640175e-05	k: 133	n:4330000
Cons ci ratio: 9.053114e-07	ci left: 9.999991e-01	ci right 1	k: 4330000	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KRTAP5-5   4330000 perm   8785 sec   (493 perm/sec)   p_kst 2.309469e-07   p_cons 1   p_joint 3.071594e-05

Joint ci ratio: 3.386312e-01	ci left: 2.565861e-05	ci right 3.631788e-05	k: 133	n:4340000
Cons ci ratio: 9.032254e-07	ci left: 9.999992e-01	ci right 1	k: 4340000	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KRTAP5-5   4340000 perm   8824 sec   (492 perm/sec)   p_kst 2.304147e-07   p_cons 1   p_joint 3.064516e-05

Joint ci ratio: 3.373746e-01	ci left: 2.581000e-05	ci right 3.648371e-05	k: 134	n:4350000
Cons ci ratio: 9.011490e-07	ci left: 9.999992e-01	ci right 1	k: 4350000	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KRTAP5-5   4350000 perm   8863 sec   (491 perm/sec)   p_kst 2.298851e-07   p_cons 1   p_joint 3.080460e-05

Joint ci ratio: 3.361319e-01	ci left: 2.596077e-05	ci right 3.664871e-05	k: 135	n:4360000
Cons ci ratio: 8.990822e-07	ci left: 9.999992e-01	ci right 1	k: 4360000	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KRTAP5-5   4360000 perm   8901 sec   (490 perm/sec)   p_kst 2.293578e-07   p_cons 1   p_joint 3.096330e-05

Joint ci ratio: 3.361320e-01	ci left: 2.590137e-05	ci right 3.656485e-05	k: 135	n:4370000
Cons ci ratio: 8.970248e-07	ci left: 9.999992e-01	ci right 1	k: 4370000	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KRTAP5-5   4370000 perm   8940 sec   (489 perm/sec)   p_kst 2.288330e-07   p_cons 1   p_joint 3.089245e-05

Joint ci ratio: 3.349029e-01	ci left: 2.605131e-05	ci right 3.672884e-05	k: 136	n:4380000
Cons ci ratio: 8.949768e-07	ci left: 9.999992e-01	ci right 1	k: 4380000	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KRTAP5-5   4380000 perm   8980 sec   (488 perm/sec)   p_kst 2.283105e-07   p_cons 1   p_joint 3.105023e-05

Joint ci ratio: 3.349029e-01	ci left: 2.599197e-05	ci right 3.664518e-05	k: 136	n:4390000
Cons ci ratio: 8.929381e-07	ci left: 9.999992e-01	ci right 1	k: 4390000	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KRTAP5-5   4390000 perm   9019 sec   (487 perm/sec)   p_kst 2.277904e-07   p_cons 1   p_joint 3.097950e-05

Joint ci ratio: 3.349029e-01	ci left: 2.593289e-05	ci right 3.656189e-05	k: 136	n:4400000
Cons ci ratio: 8.909087e-07	ci left: 9.999992e-01	ci right 1	k: 4400000	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KRTAP5-5   4400000 perm   9058 sec   (486 perm/sec)   p_kst 2.272727e-07   p_cons 1   p_joint 3.090909e-05

Joint ci ratio: 3.324848e-01	ci left: 2.628961e-05	ci right 3.697036e-05	k: 138	n:4410000
Cons ci ratio: 8.888885e-07	ci left: 9.999992e-01	ci right 1	k: 4410000	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KRTAP5-5   4410000 perm   9097 sec   (485 perm/sec)   p_kst 2.267574e-07   p_cons 1   p_joint 3.129252e-05

Joint ci ratio: 3.312952e-01	ci left: 2.643753e-05	ci right 3.713174e-05	k: 139	n:4420000
Cons ci ratio: 8.868774e-07	ci left: 9.999992e-01	ci right 1	k: 4420000	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KRTAP5-5   4420000 perm   9137 sec   (484 perm/sec)   p_kst 2.262443e-07   p_cons 1   p_joint 3.144796e-05

Joint ci ratio: 3.301183e-01	ci left: 2.658484e-05	ci right 3.729233e-05	k: 140	n:4430000
Cons ci ratio: 8.848754e-07	ci left: 9.999992e-01	ci right 1	k: 4430000	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KRTAP5-5   4430000 perm   9177 sec   (483 perm/sec)   p_kst 2.257336e-07   p_cons 1   p_joint 3.160271e-05

Joint ci ratio: 3.301183e-01	ci left: 2.652497e-05	ci right 3.720834e-05	k: 140	n:4440000
Cons ci ratio: 8.828825e-07	ci left: 9.999992e-01	ci right 1	k: 4440000	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KRTAP5-5   4440000 perm   9217 sec   (482 perm/sec)   p_kst 2.252252e-07   p_cons 1   p_joint 3.153153e-05

Joint ci ratio: 3.301183e-01	ci left: 2.646536e-05	ci right 3.712472e-05	k: 140	n:4450000
Cons ci ratio: 8.808985e-07	ci left: 9.999992e-01	ci right 1	k: 4450000	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KRTAP5-5   4450000 perm   9257 sec   (481 perm/sec)   p_kst 2.247191e-07   p_cons 1   p_joint 3.146067e-05

Joint ci ratio: 3.278016e-01	ci left: 2.681742e-05	ci right 3.752682e-05	k: 142	n:4460000
Cons ci ratio: 8.789234e-07	ci left: 9.999992e-01	ci right 1	k: 4460000	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KRTAP5-5   4460000 perm   9297 sec   (480 perm/sec)   p_kst 2.242152e-07   p_cons 1   p_joint 3.183857e-05

Joint ci ratio: 3.278016e-01	ci left: 2.675743e-05	ci right 3.744286e-05	k: 142	n:4470000
Cons ci ratio: 8.769571e-07	ci left: 9.999992e-01	ci right 1	k: 4470000	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KRTAP5-5   4470000 perm   9337 sec   (479 perm/sec)   p_kst 2.237136e-07   p_cons 1   p_joint 3.176734e-05

Joint ci ratio: 3.278016e-01	ci left: 2.669770e-05	ci right 3.735929e-05	k: 142	n:4480000
Cons ci ratio: 8.749996e-07	ci left: 9.999992e-01	ci right 1	k: 4480000	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KRTAP5-5   4480000 perm   9377 sec   (478 perm/sec)   p_kst 2.232143e-07   p_cons 1   p_joint 3.169643e-05

Joint ci ratio: 3.278016e-01	ci left: 2.663824e-05	ci right 3.727608e-05	k: 142	n:4490000
Cons ci ratio: 8.730508e-07	ci left: 9.999992e-01	ci right 1	k: 4490000	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KRTAP5-5   4490000 perm   9420 sec   (477 perm/sec)   p_kst 2.227171e-07   p_cons 1   p_joint 3.162584e-05

Joint ci ratio: 3.278016e-01	ci left: 2.657904e-05	ci right 3.719325e-05	k: 142	n:4500000
Cons ci ratio: 8.711107e-07	ci left: 9.999992e-01	ci right 1	k: 4500000	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KRTAP5-5   4500000 perm   9460 sec   (476 perm/sec)   p_kst 2.222222e-07   p_cons 1   p_joint 3.155556e-05

Joint ci ratio: 3.278016e-01	ci left: 2.652011e-05	ci right 3.711078e-05	k: 142	n:4510000
Cons ci ratio: 8.691792e-07	ci left: 9.999992e-01	ci right 1	k: 4510000	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KRTAP5-5   4510000 perm   9500 sec   (475 perm/sec)   p_kst 2.217295e-07   p_cons 1   p_joint 3.148559e-05

Joint ci ratio: 3.278016e-01	ci left: 2.646144e-05	ci right 3.702867e-05	k: 142	n:4520000
Cons ci ratio: 8.672563e-07	ci left: 9.999992e-01	ci right 1	k: 4520000	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KRTAP5-5   4520000 perm   9541 sec   (474 perm/sec)   p_kst 2.212389e-07   p_cons 1   p_joint 3.141593e-05

Joint ci ratio: 3.278017e-01	ci left: 2.640302e-05	ci right 3.694693e-05	k: 142	n:4530000
Cons ci ratio: 8.653418e-07	ci left: 9.999992e-01	ci right 1	k: 4530000	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KRTAP5-5   4530000 perm   9582 sec   (473 perm/sec)   p_kst 2.207506e-07   p_cons 1   p_joint 3.134658e-05

Joint ci ratio: 3.266615e-01	ci left: 2.654704e-05	ci right 3.710385e-05	k: 143	n:4540000
Cons ci ratio: 8.634357e-07	ci left: 9.999992e-01	ci right 1	k: 4540000	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KRTAP5-5   4540000 perm   9622 sec   (472 perm/sec)   p_kst 2.202643e-07   p_cons 1   p_joint 3.149780e-05

Joint ci ratio: 3.266615e-01	ci left: 2.648869e-05	ci right 3.702230e-05	k: 143	n:4550000
Cons ci ratio: 8.615381e-07	ci left: 9.999992e-01	ci right 1	k: 4550000	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KRTAP5-5   4550000 perm   9664 sec   (471 perm/sec)   p_kst 2.197802e-07   p_cons 1   p_joint 3.142857e-05

Joint ci ratio: 3.255331e-01	ci left: 2.663195e-05	ci right 3.717830e-05	k: 144	n:4560000
Cons ci ratio: 8.596487e-07	ci left: 9.999992e-01	ci right 1	k: 4560000	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KRTAP5-5   4560000 perm   9705 sec   (470 perm/sec)   p_kst 2.192982e-07   p_cons 1   p_joint 3.157895e-05

Joint ci ratio: 3.255331e-01	ci left: 2.657368e-05	ci right 3.709695e-05	k: 144	n:4570000
Cons ci ratio: 8.577677e-07	ci left: 9.999992e-01	ci right 1	k: 4570000	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KRTAP5-5   4570000 perm   9746 sec   (469 perm/sec)   p_kst 2.188184e-07   p_cons 1   p_joint 3.150985e-05

Joint ci ratio: 3.255331e-01	ci left: 2.651566e-05	ci right 3.701595e-05	k: 144	n:4580000
Cons ci ratio: 8.558948e-07	ci left: 9.999992e-01	ci right 1	k: 4580000	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KRTAP5-5   4580000 perm   9787 sec   (468 perm/sec)   p_kst 2.183406e-07   p_cons 1   p_joint 3.144105e-05

Joint ci ratio: 3.244163e-01	ci left: 2.665798e-05	ci right 3.717088e-05	k: 145	n:4590000
Cons ci ratio: 8.540301e-07	ci left: 9.999992e-01	ci right 1	k: 4590000	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KRTAP5-5   4590000 perm   9828 sec   (467 perm/sec)   p_kst 2.178649e-07   p_cons 1   p_joint 3.159041e-05

Joint ci ratio: 3.222168e-01	ci left: 2.699953e-05	ci right 3.756002e-05	k: 147	n:4600000
Cons ci ratio: 8.521735e-07	ci left: 9.999992e-01	ci right 1	k: 4600000	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KRTAP5-5   4600000 perm   9870 sec   (466 perm/sec)   p_kst 2.173913e-07   p_cons 1   p_joint 3.195652e-05

Joint ci ratio: 3.211337e-01	ci left: 2.714037e-05	ci right 3.771292e-05	k: 148	n:4610000
Cons ci ratio: 8.503250e-07	ci left: 9.999992e-01	ci right 1	k: 4610000	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KRTAP5-5   4610000 perm   9911 sec   (465 perm/sec)   p_kst 2.169197e-07   p_cons 1   p_joint 3.210412e-05

Joint ci ratio: 3.222168e-01	ci left: 2.688265e-05	ci right 3.739742e-05	k: 147	n:4620000
Cons ci ratio: 8.484845e-07	ci left: 9.999992e-01	ci right 1	k: 4620000	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KRTAP5-5   4620000 perm   9952 sec   (464 perm/sec)   p_kst 2.164502e-07   p_cons 1   p_joint 3.181818e-05

Joint ci ratio: 3.222168e-01	ci left: 2.682459e-05	ci right 3.731665e-05	k: 147	n:4630000
Cons ci ratio: 8.466519e-07	ci left: 9.999992e-01	ci right 1	k: 4630000	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KRTAP5-5   4630000 perm   9994 sec   (463 perm/sec)   p_kst 2.159827e-07   p_cons 1   p_joint 3.174946e-05

Joint ci ratio: 3.222168e-01	ci left: 2.676678e-05	ci right 3.723623e-05	k: 147	n:4640000
Cons ci ratio: 8.448272e-07	ci left: 9.999992e-01	ci right 1	k: 4640000	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KRTAP5-5   4640000 perm   10035 sec   (462 perm/sec)   p_kst 2.155172e-07   p_cons 1   p_joint 3.168103e-05

Joint ci ratio: 3.222169e-01	ci left: 2.670921e-05	ci right 3.715615e-05	k: 147	n:4650000
Cons ci ratio: 8.430104e-07	ci left: 9.999992e-01	ci right 1	k: 4650000	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KRTAP5-5   4650000 perm   10076 sec   (461 perm/sec)   p_kst 2.150538e-07   p_cons 1   p_joint 3.161290e-05

Joint ci ratio: 3.222169e-01	ci left: 2.665190e-05	ci right 3.707641e-05	k: 147	n:4660000
Cons ci ratio: 8.412014e-07	ci left: 9.999992e-01	ci right 1	k: 4660000	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KRTAP5-5   4660000 perm   10117 sec   (461 perm/sec)   p_kst 2.145923e-07   p_cons 1   p_joint 3.154506e-05

Joint ci ratio: 3.222169e-01	ci left: 2.659483e-05	ci right 3.699702e-05	k: 147	n:4670000
Cons ci ratio: 8.394001e-07	ci left: 9.999992e-01	ci right 1	k: 4670000	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KRTAP5-5   4670000 perm   10159 sec   (460 perm/sec)   p_kst 2.141328e-07   p_cons 1   p_joint 3.147752e-05

Joint ci ratio: 3.222169e-01	ci left: 2.653800e-05	ci right 3.691797e-05	k: 147	n:4680000
Cons ci ratio: 8.376065e-07	ci left: 9.999992e-01	ci right 1	k: 4680000	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KRTAP5-5   4680000 perm   10200 sec   (459 perm/sec)   p_kst 2.136752e-07   p_cons 1   p_joint 3.141026e-05

Joint ci ratio: 3.222169e-01	ci left: 2.648142e-05	ci right 3.683925e-05	k: 147	n:4690000
Cons ci ratio: 8.358205e-07	ci left: 9.999992e-01	ci right 1	k: 4690000	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KRTAP5-5   4690000 perm   10242 sec   (458 perm/sec)   p_kst 2.132196e-07   p_cons 1   p_joint 3.134328e-05

Joint ci ratio: 3.222169e-01	ci left: 2.642507e-05	ci right 3.676087e-05	k: 147	n:4700000
Cons ci ratio: 8.340422e-07	ci left: 9.999992e-01	ci right 1	k: 4700000	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KRTAP5-5   4700000 perm   10284 sec   (457 perm/sec)   p_kst 2.127660e-07   p_cons 1   p_joint 3.127660e-05

Joint ci ratio: 3.222169e-01	ci left: 2.636897e-05	ci right 3.668282e-05	k: 147	n:4710000
Cons ci ratio: 8.322714e-07	ci left: 9.999992e-01	ci right 1	k: 4710000	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KRTAP5-5   4710000 perm   10326 sec   (456 perm/sec)   p_kst 2.123142e-07   p_cons 1   p_joint 3.121019e-05

Joint ci ratio: 3.222169e-01	ci left: 2.631310e-05	ci right 3.660510e-05	k: 147	n:4720000
Cons ci ratio: 8.305081e-07	ci left: 9.999992e-01	ci right 1	k: 4720000	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KRTAP5-5   4720000 perm   10368 sec   (455 perm/sec)   p_kst 2.118644e-07   p_cons 1   p_joint 3.114407e-05

Joint ci ratio: 3.222169e-01	ci left: 2.625747e-05	ci right 3.652772e-05	k: 147	n:4730000
Cons ci ratio: 8.287523e-07	ci left: 9.999992e-01	ci right 1	k: 4730000	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KRTAP5-5   4730000 perm   10410 sec   (454 perm/sec)   p_kst 2.114165e-07   p_cons 1   p_joint 3.107822e-05

Joint ci ratio: 3.211338e-01	ci left: 2.639601e-05	ci right 3.667860e-05	k: 148	n:4740000
Cons ci ratio: 8.270039e-07	ci left: 9.999992e-01	ci right 1	k: 4740000	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KRTAP5-5   4740000 perm   10452 sec   (454 perm/sec)   p_kst 2.109705e-07   p_cons 1   p_joint 3.122363e-05

Joint ci ratio: 3.200616e-01	ci left: 2.653403e-05	ci right 3.682879e-05	k: 149	n:4750000
Cons ci ratio: 8.252628e-07	ci left: 9.999992e-01	ci right 1	k: 4750000	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KRTAP5-5   4750000 perm   10493 sec   (453 perm/sec)   p_kst 2.105263e-07   p_cons 1   p_joint 3.136842e-05

Joint ci ratio: 3.190000e-01	ci left: 2.667152e-05	ci right 3.697830e-05	k: 150	n:4760000
Cons ci ratio: 8.235291e-07	ci left: 9.999992e-01	ci right 1	k: 4760000	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KRTAP5-5   4760000 perm   10536 sec   (452 perm/sec)   p_kst 2.100840e-07   p_cons 1   p_joint 3.151261e-05

Joint ci ratio: 3.190000e-01	ci left: 2.661561e-05	ci right 3.690077e-05	k: 150	n:4770000
Cons ci ratio: 8.218026e-07	ci left: 9.999992e-01	ci right 1	k: 4770000	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KRTAP5-5   4770000 perm   10578 sec   (451 perm/sec)   p_kst 2.096436e-07   p_cons 1   p_joint 3.144654e-05

Joint ci ratio: 3.190000e-01	ci left: 2.655993e-05	ci right 3.682357e-05	k: 150	n:4780000
Cons ci ratio: 8.200833e-07	ci left: 9.999992e-01	ci right 1	k: 4780000	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KRTAP5-5   4780000 perm   10621 sec   (450 perm/sec)   p_kst 2.092050e-07   p_cons 1   p_joint 3.138075e-05

Joint ci ratio: 3.190000e-01	ci left: 2.650448e-05	ci right 3.674670e-05	k: 150	n:4790000
Cons ci ratio: 8.183713e-07	ci left: 9.999992e-01	ci right 1	k: 4790000	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KRTAP5-5   4790000 perm   10663 sec   (449 perm/sec)   p_kst 2.087683e-07   p_cons 1   p_joint 3.131524e-05

Joint ci ratio: 3.190000e-01	ci left: 2.644926e-05	ci right 3.667014e-05	k: 150	n:4800000
Cons ci ratio: 8.166663e-07	ci left: 9.999992e-01	ci right 1	k: 4800000	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KRTAP5-5   4800000 perm   10706 sec   (448 perm/sec)   p_kst 2.083333e-07   p_cons 1   p_joint 3.125000e-05

Joint ci ratio: 3.179489e-01	ci left: 2.658556e-05	ci right 3.681837e-05	k: 151	n:4810000
Cons ci ratio: 8.149685e-07	ci left: 9.999992e-01	ci right 1	k: 4810000	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KRTAP5-5   4810000 perm   10749 sec   (447 perm/sec)   p_kst 2.079002e-07   p_cons 1   p_joint 3.139293e-05

Joint ci ratio: 3.158775e-01	ci left: 2.691234e-05	ci right 3.718981e-05	k: 153	n:4820000
Cons ci ratio: 8.132777e-07	ci left: 9.999992e-01	ci right 1	k: 4820000	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KRTAP5-5   4820000 perm   10791 sec   (447 perm/sec)   p_kst 2.074689e-07   p_cons 1   p_joint 3.174274e-05

Joint ci ratio: 3.148569e-01	ci left: 2.704727e-05	ci right 3.733619e-05	k: 154	n:4830000
Cons ci ratio: 8.115939e-07	ci left: 9.999992e-01	ci right 1	k: 4830000	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KRTAP5-5   4830000 perm   10834 sec   (446 perm/sec)   p_kst 2.070393e-07   p_cons 1   p_joint 3.188406e-05

Joint ci ratio: 3.138461e-01	ci left: 2.718171e-05	ci right 3.748190e-05	k: 155	n:4840000
Cons ci ratio: 8.099170e-07	ci left: 9.999992e-01	ci right 1	k: 4840000	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KRTAP5-5   4840000 perm   10877 sec   (445 perm/sec)   p_kst 2.066116e-07   p_cons 1   p_joint 3.202479e-05

Joint ci ratio: 3.138461e-01	ci left: 2.712566e-05	ci right 3.740462e-05	k: 155	n:4850000
Cons ci ratio: 8.082471e-07	ci left: 9.999992e-01	ci right 1	k: 4850000	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KRTAP5-5   4850000 perm   10919 sec   (444 perm/sec)   p_kst 2.061856e-07   p_cons 1   p_joint 3.195876e-05

Joint ci ratio: 3.128450e-01	ci left: 2.725943e-05	ci right 3.754955e-05	k: 156	n:4860000
Cons ci ratio: 8.065840e-07	ci left: 9.999992e-01	ci right 1	k: 4860000	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KRTAP5-5   4860000 perm   10963 sec   (443 perm/sec)   p_kst 2.057613e-07   p_cons 1   p_joint 3.209877e-05

Joint ci ratio: 3.128450e-01	ci left: 2.720346e-05	ci right 3.747244e-05	k: 156	n:4870000
Cons ci ratio: 8.049278e-07	ci left: 9.999992e-01	ci right 1	k: 4870000	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KRTAP5-5   4870000 perm   11007 sec   (442 perm/sec)   p_kst 2.053388e-07   p_cons 1   p_joint 3.203285e-05

Joint ci ratio: 3.128450e-01	ci left: 2.714771e-05	ci right 3.739565e-05	k: 156	n:4880000
Cons ci ratio: 8.032784e-07	ci left: 9.999992e-01	ci right 1	k: 4880000	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KRTAP5-5   4880000 perm   11050 sec   (442 perm/sec)   p_kst 2.049180e-07   p_cons 1   p_joint 3.196721e-05

Joint ci ratio: 3.128450e-01	ci left: 2.709219e-05	ci right 3.731918e-05	k: 156	n:4890000
Cons ci ratio: 8.016357e-07	ci left: 9.999992e-01	ci right 1	k: 4890000	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KRTAP5-5   4890000 perm   11094 sec   (441 perm/sec)   p_kst 2.044990e-07   p_cons 1   p_joint 3.190184e-05

Joint ci ratio: 3.118534e-01	ci left: 2.722499e-05	ci right 3.746305e-05	k: 157	n:4900000
Cons ci ratio: 7.999997e-07	ci left: 9.999992e-01	ci right 1	k: 4900000	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KRTAP5-5   4900000 perm   11137 sec   (440 perm/sec)   p_kst 2.040816e-07   p_cons 1   p_joint 3.204082e-05

Joint ci ratio: 3.118534e-01	ci left: 2.716954e-05	ci right 3.738675e-05	k: 157	n:4910000
Cons ci ratio: 7.983703e-07	ci left: 9.999992e-01	ci right 1	k: 4910000	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KRTAP5-5   4910000 perm   11181 sec   (439 perm/sec)   p_kst 2.036660e-07   p_cons 1   p_joint 3.197556e-05

Joint ci ratio: 3.118534e-01	ci left: 2.711432e-05	ci right 3.731076e-05	k: 157	n:4920000
Cons ci ratio: 7.967476e-07	ci left: 9.999993e-01	ci right 1	k: 4920000	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KRTAP5-5   4920000 perm   11225 sec   (438 perm/sec)   p_kst 2.032520e-07   p_cons 1   p_joint 3.191057e-05

Joint ci ratio: 3.118534e-01	ci left: 2.705932e-05	ci right 3.723508e-05	k: 157	n:4930000
Cons ci ratio: 7.951315e-07	ci left: 9.999993e-01	ci right 1	k: 4930000	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KRTAP5-5   4930000 perm   11268 sec   (438 perm/sec)   p_kst 2.028398e-07   p_cons 1   p_joint 3.184584e-05

Joint ci ratio: 3.118534e-01	ci left: 2.700454e-05	ci right 3.715970e-05	k: 157	n:4940000
Cons ci ratio: 7.935219e-07	ci left: 9.999993e-01	ci right 1	k: 4940000	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KRTAP5-5   4940000 perm   11311 sec   (437 perm/sec)   p_kst 2.024291e-07   p_cons 1   p_joint 3.178138e-05

Joint ci ratio: 3.108712e-01	ci left: 2.713623e-05	ci right 3.730239e-05	k: 158	n:4950000
Cons ci ratio: 7.919189e-07	ci left: 9.999993e-01	ci right 1	k: 4950000	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KRTAP5-5   4950000 perm   11355 sec   (436 perm/sec)   p_kst 2.020202e-07   p_cons 1   p_joint 3.191919e-05

Joint ci ratio: 3.108712e-01	ci left: 2.708152e-05	ci right 3.722718e-05	k: 158	n:4960000
Cons ci ratio: 7.903223e-07	ci left: 9.999993e-01	ci right 1	k: 4960000	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KRTAP5-5   4960000 perm   11399 sec   (435 perm/sec)   p_kst 2.016129e-07   p_cons 1   p_joint 3.185484e-05

Joint ci ratio: 3.108712e-01	ci left: 2.702703e-05	ci right 3.715228e-05	k: 158	n:4970000
Cons ci ratio: 7.887321e-07	ci left: 9.999993e-01	ci right 1	k: 4970000	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KRTAP5-5   4970000 perm   11443 sec   (434 perm/sec)   p_kst 2.012072e-07   p_cons 1   p_joint 3.179074e-05

Joint ci ratio: 3.089343e-01	ci left: 2.734314e-05	ci right 3.751041e-05	k: 160	n:4980000
Cons ci ratio: 7.871483e-07	ci left: 9.999993e-01	ci right 1	k: 4980000	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KRTAP5-5   4980000 perm   11488 sec   (433 perm/sec)   p_kst 2.008032e-07   p_cons 1   p_joint 3.212851e-05

Joint ci ratio: 3.089343e-01	ci left: 2.728834e-05	ci right 3.743524e-05	k: 160	n:4990000
Cons ci ratio: 7.855708e-07	ci left: 9.999993e-01	ci right 1	k: 4990000	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KRTAP5-5   4990000 perm   11533 sec   (433 perm/sec)   p_kst 2.004008e-07   p_cons 1   p_joint 3.206413e-05

Joint ci ratio: 3.089343e-01	ci left: 2.723376e-05	ci right 3.736037e-05	k: 160	n:5000000
Cons ci ratio: 7.839997e-07	ci left: 9.999993e-01	ci right 1	k: 5000000	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KRTAP5-5   5000000 perm   11577 sec   (432 perm/sec)   p_kst 2.000000e-07   p_cons 1   p_joint 3.200000e-05

Outputting figure to mutsig2_images.part000000000094/KRTAP5-5.23_718_5000000_2e-07_1_3.2e-05.png
                gene_name: KRTAP5-5
               theta_stop: 2.8 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 3.20e-05 
     ci_joint_bounds_left: 2.72e-05 
    ci_joint_bounds_right: 3.74e-05 

Current progress: 2 percent done.
L1CAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
L1CAM   10000 perm   3 sec   (3886 perm/sec)   p_kst 3.199000e-01   p_cons 4.325000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000094/L1CAM.14_3886_10000_0.3199_0.4325_0.5597.png
                gene_name: L1CAM
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
KRTAP24-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
Cons ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
KS ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KRTAP24-1   10000 perm   2 sec   (5484 perm/sec)   p_kst 9.060000e-02   p_cons 7.245000e-01   p_joint 2.024000e-01

Joint ci ratio: 5.612130e-02	ci left: 1.905673e-01	ci right 2.016211e-01	k: 3921	n:20000
Cons ci ratio: 1.664561e-02	ci left: 7.287743e-01	ci right 7.410573e-01	k: 14699	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
KRTAP24-1   20000 perm   4 sec   (4836 perm/sec)   p_kst 8.880000e-02   p_cons 7.349500e-01   p_joint 1.960500e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP24-1.8_769_20000_0.0888_0.73495_0.19605.png
                gene_name: KRTAP24-1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 5 percent done.
KRTAP11-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
Cons ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
KS ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
KRTAP11-1   10000 perm   2 sec   (6255 perm/sec)   p_kst 3.962000e-01   p_cons 3.101000e-01   p_joint 3.911000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP11-1.7_496_10000_0.3962_0.3101_0.3911.png
                gene_name: KRTAP11-1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 7 percent done.
KRTAP15-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
Cons ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
KS ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
KRTAP15-1   10000 perm   2 sec   (5619 perm/sec)   p_kst 6.867000e-01   p_cons 9.492000e-01   p_joint 8.683000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP15-1.7_418_10000_0.6867_0.9492_0.8683.png
                gene_name: KRTAP15-1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 9 percent done.
KRTAP13-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KRTAP13-3   10000 perm   2 sec   (5999 perm/sec)   p_kst 1   p_cons 3.141000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-3.6_523_10000_1_0.3141_0.7297.png
                gene_name: KRTAP13-3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 11 percent done.
KRTAP26-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
Cons ci ratio: 3.058833e-02	ci left: 6.119096e-01	ci right 6.310196e-01	k: 6215	n:10000
KS ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
KRTAP26-1   10000 perm   2 sec   (5949 perm/sec)   p_kst 5.390000e-01   p_cons 6.215000e-01   p_joint 8.691000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP26-1.6_637_10000_0.539_0.6215_0.8691.png
                gene_name: KRTAP26-1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 12 percent done.
KSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
Cons ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
KS ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
KSR1   10000 perm   2 sec   (4814 perm/sec)   p_kst 4.640000e-01   p_cons 5.578000e-01   p_joint 6.231000e-01

Outputting figure to mutsig2_images.part000000000094/KSR1.6_2361_10000_0.464_0.5578_0.6231.png
                gene_name: KSR1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
KSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
Cons ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
KS ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
KSR2   10000 perm   2 sec   (4654 perm/sec)   p_kst 2.292000e-01   p_cons 9.860000e-02   p_joint 1.325000e-01

Joint ci ratio: 7.204010e-02	ci left: 1.242852e-01	ci right 1.336230e-01	k: 2578	n:20000
Cons ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
KS ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
KSR2   20000 perm   5 sec   (4131 perm/sec)   p_kst 2.227500e-01   p_cons 9.625000e-02   p_joint 1.289000e-01

Outputting figure to mutsig2_images.part000000000094/KSR2.6_2846_20000_0.22275_0.09625_0.1289.png
                gene_name: KSR2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 16 percent done.
L3MBTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427287e-02	ci left: 5.569195e-01	ci right 5.764416e-01	k: 5667	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
L3MBTL4   10000 perm   2 sec   (5275 perm/sec)   p_kst 4.945000e-01   p_cons 5.006000e-01   p_joint 5.667000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL4.6_1944_10000_0.4945_0.5006_0.5667.png
                gene_name: L3MBTL4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 18 percent done.
KRTAP13-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
Cons ci ratio: 3.479209e-02	ci left: 5.495033e-01	ci right 5.690622e-01	k: 5593	n:10000
KS ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
KRTAP13-2   10000 perm   2 sec   (5611 perm/sec)   p_kst 4.102000e-01   p_cons 5.593000e-01   p_joint 5.743000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-2.5_532_10000_0.4102_0.5593_0.5743.png
                gene_name: KRTAP13-2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
KRTAP19-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
Cons ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
KS ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
KRTAP19-6   10000 perm   2 sec   (5629 perm/sec)   p_kst 3.648000e-01   p_cons 9.807000e-01   p_joint 5.502000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP19-6.5_181_10000_0.3648_0.9807_0.5502.png
                gene_name: KRTAP19-6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 21 percent done.
KRTAP19-7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
Cons ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
KS ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
KRTAP19-7   10000 perm   1 sec   (6749 perm/sec)   p_kst 6.628000e-01   p_cons 3.732000e-01   p_joint 5.854000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP19-7.5_195_10000_0.6628_0.3732_0.5854.png
                gene_name: KRTAP19-7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 23 percent done.
KRTAP27-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KRTAP27-1   10000 perm   2 sec   (5855 perm/sec)   p_kst 3.418000e-01   p_cons 8.182000e-01   p_joint 6.344000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP27-1.5_628_10000_0.3418_0.8182_0.6344.png
                gene_name: KRTAP27-1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 25 percent done.
KRTAP4-11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
Cons ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KS ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
KRTAP4-11   10000 perm   2 sec   (6449 perm/sec)   p_kst 1.661000e-01   p_cons 8.879000e-01   p_joint 3.502000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-11.5_592_10000_0.1661_0.8879_0.3502.png
                gene_name: KRTAP4-11
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 26 percent done.
KRTAP5-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
Cons ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
KS ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
KRTAP5-1   10000 perm   2 sec   (5710 perm/sec)   p_kst 6.900000e-03   p_cons 8.480000e-01   p_joint 4.860000e-02

Joint ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
Cons ci ratio: 1.121702e-02	ci left: 8.544038e-01	ci right 8.640915e-01	k: 17186	n:20000
KS ci ratio: 3.337509e-01	ci left: 5.708210e-03	ci right 8.038631e-03	k: 136	n:20000
KRTAP5-1   20000 perm   4 sec   (5092 perm/sec)   p_kst 6.800000e-03   p_cons 8.593000e-01   p_joint 3.430000e-02

Joint ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
Cons ci ratio: 9.536354e-03	ci left: 8.451338e-01	ci right 8.532651e-01	k: 25477	n:30000
KS ci ratio: 2.695528e-01	ci left: 6.056795e-03	ci right 7.973879e-03	k: 209	n:30000
KRTAP5-1   30000 perm   6 sec   (4859 perm/sec)   p_kst 6.966667e-03   p_cons 8.492333e-01   p_joint 2.040000e-02

Joint ci ratio: 1.548151e-01	ci left: 1.455261e-02	ci right 1.701842e-02	k: 630	n:40000
Cons ci ratio: 8.271803e-03	ci left: 8.452767e-01	ci right 8.523226e-01	k: 33953	n:40000
KS ci ratio: 2.301523e-01	ci left: 6.371322e-03	ci right 8.051413e-03	k: 287	n:40000
KRTAP5-1   40000 perm   8 sec   (4706 perm/sec)   p_kst 7.175000e-03   p_cons 8.488250e-01   p_joint 1.575000e-02

Joint ci ratio: 1.065012e-01	ci left: 2.497333e-02	ci right 2.780202e-02	k: 1318	n:50000
Cons ci ratio: 7.411303e-03	ci left: 8.452061e-01	ci right 8.515134e-01	k: 42419	n:50000
KS ci ratio: 2.081979e-01	ci left: 6.306921e-03	ci right 7.791178e-03	k: 351	n:50000
KRTAP5-1   50000 perm   11 sec   (4581 perm/sec)   p_kst 7.020000e-03   p_cons 8.483800e-01   p_joint 2.636000e-02

Joint ci ratio: 1.053215e-01	ci left: 2.137687e-02	ci right 2.376962e-02	k: 1353	n:60000
Cons ci ratio: 6.779029e-03	ci left: 8.449678e-01	ci right 8.507319e-01	k: 50872	n:60000
KS ci ratio: 1.890243e-01	ci left: 6.443773e-03	ci right 7.804557e-03	k: 426	n:60000
KRTAP5-1   60000 perm   13 sec   (4465 perm/sec)   p_kst 7.100000e-03   p_cons 8.478667e-01   p_joint 2.255000e-02

Joint ci ratio: 9.088851e-02	ci left: 2.470794e-02	ci right 2.707444e-02	k: 1811	n:70000
Cons ci ratio: 6.266990e-03	ci left: 8.455634e-01	ci right 8.508934e-01	k: 59377	n:70000
KS ci ratio: 1.734605e-01	ci left: 6.614371e-03	ci right 7.884132e-03	k: 506	n:70000
KRTAP5-1   70000 perm   16 sec   (4355 perm/sec)   p_kst 7.228571e-03   p_cons 8.482429e-01   p_joint 2.587143e-02

Joint ci ratio: 8.980473e-02	ci left: 2.221681e-02	ci right 2.431796e-02	k: 1860	n:80000
Cons ci ratio: 5.856933e-03	ci left: 8.459715e-01	ci right 8.509532e-01	k: 67878	n:80000
KS ci ratio: 1.624594e-01	ci left: 6.637803e-03	ci right 7.823354e-03	k: 577	n:80000
KRTAP5-1   80000 perm   19 sec   (4262 perm/sec)   p_kst 7.212500e-03   p_cons 8.484750e-01   p_joint 2.325000e-02

Joint ci ratio: 9.009671e-02	ci left: 1.967107e-02	ci right 2.153779e-02	k: 1853	n:90000
Cons ci ratio: 5.522616e-03	ci left: 8.460849e-01	ci right 8.507815e-01	k: 76360	n:90000
KS ci ratio: 1.555039e-01	ci left: 6.465691e-03	ci right 7.566444e-03	k: 630	n:90000
KRTAP5-1   90000 perm   22 sec   (4175 perm/sec)   p_kst 7.000000e-03   p_cons 8.484444e-01   p_joint 2.058889e-02

Joint ci ratio: 8.692784e-02	ci left: 1.906293e-02	ci right 2.080507e-02	k: 1992	n:100000
Cons ci ratio: 5.241945e-03	ci left: 8.460716e-01	ci right 8.505282e-01	k: 84831	n:100000
KS ci ratio: 1.481757e-01	ci left: 6.434806e-03	ci right 7.474101e-03	k: 694	n:100000
KRTAP5-1   100000 perm   24 sec   (4093 perm/sec)   p_kst 6.940000e-03   p_cons 8.483100e-01   p_joint 1.992000e-02

Joint ci ratio: 8.784231e-02	ci left: 1.700012e-02	ci right 1.857090e-02	k: 1955	n:110000
Cons ci ratio: 4.986531e-03	ci left: 8.467698e-01	ci right 8.510118e-01	k: 93379	n:110000
KS ci ratio: 1.411407e-01	ci left: 6.471934e-03	ci right 7.463420e-03	k: 765	n:110000
KRTAP5-1   110000 perm   27 sec   (4016 perm/sec)   p_kst 6.954545e-03   p_cons 8.489000e-01   p_joint 1.777273e-02

Joint ci ratio: 8.078921e-02	ci left: 1.846372e-02	ci right 2.002630e-02	k: 2308	n:120000
Cons ci ratio: 4.773770e-03	ci left: 8.468862e-01	ci right 8.509469e-01	k: 101871	n:120000
KS ci ratio: 1.345364e-01	ci left: 6.552171e-03	ci right 7.505220e-03	k: 842	n:120000
KRTAP5-1   120000 perm   30 sec   (3945 perm/sec)   p_kst 7.016667e-03   p_cons 8.489250e-01   p_joint 1.923333e-02

Joint ci ratio: 8.072569e-02	ci left: 1.709570e-02	ci right 1.854131e-02	k: 2315	n:130000
Cons ci ratio: 4.587071e-03	ci left: 8.469338e-01	ci right 8.508353e-01	k: 110356	n:130000
KS ci ratio: 1.302860e-01	ci left: 6.464639e-03	ci right 7.372949e-03	k: 898	n:130000
KRTAP5-1   130000 perm   34 sec   (3878 perm/sec)   p_kst 6.907692e-03   p_cons 8.488923e-01   p_joint 1.780769e-02

Joint ci ratio: 7.872892e-02	ci left: 1.671450e-02	ci right 1.809131e-02	k: 2435	n:140000
Cons ci ratio: 4.420200e-03	ci left: 8.470060e-01	ci right 8.507653e-01	k: 118845	n:140000
KS ci ratio: 1.257532e-01	ci left: 6.459211e-03	ci right 7.332828e-03	k: 964	n:140000
KRTAP5-1   140000 perm   37 sec   (3809 perm/sec)   p_kst 6.885714e-03   p_cons 8.488929e-01   p_joint 1.739286e-02

Joint ci ratio: 7.495628e-02	ci left: 1.723502e-02	ci right 1.858371e-02	k: 2685	n:150000
Cons ci ratio: 4.268755e-03	ci left: 8.471646e-01	ci right 8.507953e-01	k: 127348	n:150000
KS ci ratio: 1.207812e-01	ci left: 6.551968e-03	ci right 7.400591e-03	k: 1045	n:150000
KRTAP5-1   150000 perm   40 sec   (3744 perm/sec)   p_kst 6.966667e-03   p_cons 8.489867e-01   p_joint 1.790000e-02

Joint ci ratio: 6.913073e-02	ci left: 1.901852e-02	ci right 2.038647e-02	k: 3151	n:160000
Cons ci ratio: 4.136412e-03	ci left: 8.470226e-01	ci right 8.505397e-01	k: 135806	n:160000
KS ci ratio: 1.177312e-01	ci left: 6.475951e-03	ci right 7.292072e-03	k: 1100	n:160000
KRTAP5-1   160000 perm   43 sec   (3684 perm/sec)   p_kst 6.875000e-03   p_cons 8.487875e-01   p_joint 1.969375e-02

Joint ci ratio: 6.889374e-02	ci left: 1.804399e-02	ci right 1.933721e-02	k: 3176	n:170000
Cons ci ratio: 4.011240e-03	ci left: 8.471827e-01	ci right 8.505936e-01	k: 144312	n:170000
KS ci ratio: 1.143053e-01	ci left: 6.477694e-03	ci right 7.268676e-03	k: 1167	n:170000
KRTAP5-1   170000 perm   47 sec   (3628 perm/sec)   p_kst 6.864706e-03   p_cons 8.488941e-01   p_joint 1.868235e-02

Joint ci ratio: 6.376965e-02	ci left: 1.990502e-02	ci right 2.122160e-02	k: 3700	n:180000
Cons ci ratio: 3.901678e-03	ci left: 8.470027e-01	ci right 8.503194e-01	k: 152760	n:180000
KS ci ratio: 1.108911e-01	ci left: 6.511963e-03	ci right 7.281825e-03	k: 1240	n:180000
KRTAP5-1   180000 perm   50 sec   (3574 perm/sec)   p_kst 6.888889e-03   p_cons 8.486667e-01   p_joint 2.055556e-02

Joint ci ratio: 6.156082e-02	ci left: 2.025110e-02	ci right 2.154252e-02	k: 3969	n:190000
Cons ci ratio: 3.945813e-03	ci left: 8.369062e-01	ci right 8.402203e-01	k: 159328	n:190000
KS ci ratio: 1.077244e-01	ci left: 6.548060e-03	ci right 7.298681e-03	k: 1314	n:190000
KRTAP5-1   190000 perm   54 sec   (3520 perm/sec)   p_kst 6.915789e-03   p_cons 8.385684e-01   p_joint 2.088947e-02

Joint ci ratio: 6.212258e-02	ci left: 1.891324e-02	ci right 2.013074e-02	k: 3903	n:200000
Cons ci ratio: 3.846874e-03	ci left: 8.368798e-01	ci right 8.401104e-01	k: 167700	n:200000
KS ci ratio: 1.047384e-01	ci left: 6.590569e-03	ci right 7.323831e-03	k: 1390	n:200000
KRTAP5-1   200000 perm   58 sec   (3471 perm/sec)   p_kst 6.950000e-03   p_cons 8.385000e-01   p_joint 1.951500e-02

Joint ci ratio: 6.103059e-02	ci left: 1.867832e-02	ci right 1.985881e-02	k: 4045	n:210000
Cons ci ratio: 3.753372e-03	ci left: 8.369764e-01	ci right 8.401285e-01	k: 176097	n:210000
KS ci ratio: 1.025880e-01	ci left: 6.550393e-03	ci right 7.263320e-03	k: 1449	n:210000
KRTAP5-1   210000 perm   61 sec   (3420 perm/sec)   p_kst 6.900000e-03   p_cons 8.385571e-01   p_joint 1.926190e-02

Joint ci ratio: 6.064684e-02	ci left: 1.807085e-02	ci right 1.920552e-02	k: 4099	n:220000
Cons ci ratio: 3.668095e-03	ci left: 8.369373e-01	ci right 8.400174e-01	k: 184466	n:220000
KS ci ratio: 1.005312e-01	ci left: 6.518442e-03	ci right 7.212828e-03	k: 1509	n:220000
KRTAP5-1   220000 perm   66 sec   (3334 perm/sec)   p_kst 6.859091e-03   p_cons 8.384818e-01   p_joint 1.863182e-02

Joint ci ratio: 5.569117e-02	ci left: 2.049937e-02	ci right 2.167796e-02	k: 4849	n:230000
Cons ci ratio: 3.586478e-03	ci left: 8.370464e-01	ci right 8.400581e-01	k: 192868	n:230000
KS ci ratio: 9.840428e-02	ci left: 6.514849e-03	ci right 7.193321e-03	k: 1575	n:230000
KRTAP5-1   230000 perm   70 sec   (3285 perm/sec)   p_kst 6.847826e-03   p_cons 8.385565e-01   p_joint 2.108261e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP5-1.5_841_230000_0.0068478_0.83856_0.021083.png
                gene_name: KRTAP5-1
               theta_stop: 0.098 
                    nperm: 230000 
                     p_ks: 0.0068 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 28 percent done.
KRTAP9-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
Cons ci ratio: 1.467390e-03	ci left: 9.977780e-01	ci right 9.993076e-01	k: 9987	n:10000
KS ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
KRTAP9-4   10000 perm   2 sec   (6048 perm/sec)   p_kst 2.867000e-01   p_cons 9.987000e-01   p_joint 5.687000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP9-4.5_469_10000_0.2867_0.9987_0.5687.png
                gene_name: KRTAP9-4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 30 percent done.
KTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
Cons ci ratio: 3.302639e-02	ci left: 5.750686e-01	ci right 5.944820e-01	k: 5848	n:10000
KS ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
KTN1   10000 perm   2 sec   (4262 perm/sec)   p_kst 6.329000e-01   p_cons 5.848000e-01   p_joint 7.262000e-01

Outputting figure to mutsig2_images.part000000000094/KTN1.5_4255_10000_0.6329_0.5848_0.7262.png
                gene_name: KTN1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 32 percent done.
KYNU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
KS ci ratio: 6.528325e-03	ci left: 9.697378e-01	ci right 9.761827e-01	k: 9731	n:10000
KYNU   10000 perm   2 sec   (5417 perm/sec)   p_kst 9.731000e-01   p_cons 4.573000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000094/KYNU.5_1476_10000_0.9731_0.4573_0.857.png
                gene_name: KYNU
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 33 percent done.
L1TD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.728838e-02	ci left: 3.975486e-01	ci right 4.169054e-01	k: 4072	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
L1TD1   10000 perm   2 sec   (5003 perm/sec)   p_kst 2.042000e-01   p_cons 7.795000e-01   p_joint 4.072000e-01

Outputting figure to mutsig2_images.part000000000094/L1TD1.5_2606_10000_0.2042_0.7795_0.4072.png
                gene_name: L1TD1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
KRTAP10-9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
Cons ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
KRTAP10-9   10000 perm   2 sec   (5919 perm/sec)   p_kst 8.949000e-01   p_cons 5.230000e-02   p_joint 1.473000e-01

Joint ci ratio: 5.618368e-02	ci left: 1.902211e-01	ci right 2.012675e-01	k: 3914	n:20000
Cons ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
KS ci ratio: 9.683693e-03	ci left: 8.868533e-01	ci right 8.955326e-01	k: 17825	n:20000
KRTAP10-9   20000 perm   4 sec   (5152 perm/sec)   p_kst 8.912500e-01   p_cons 5.495000e-02   p_joint 1.957000e-01

Joint ci ratio: 4.327510e-02	ci left: 2.100977e-01	ci right 2.194242e-01	k: 6442	n:30000
Cons ci ratio: 9.354131e-02	ci left: 5.270749e-02	ci right 5.791238e-02	k: 1658	n:30000
KS ci ratio: 7.913841e-03	ci left: 8.874865e-01	ci right 8.945709e-01	k: 26732	n:30000
KRTAP10-9   30000 perm   6 sec   (4871 perm/sec)   p_kst 8.910667e-01   p_cons 5.526667e-02   p_joint 2.147333e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP10-9.4_883_30000_0.89107_0.055267_0.21473.png
                gene_name: KRTAP10-9
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
KRTAP13-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
KRTAP13-1   10000 perm   2 sec   (5833 perm/sec)   p_kst 4.972000e-01   p_cons 2.206000e-01   p_joint 5.570000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-1.4_523_10000_0.4972_0.2206_0.557.png
                gene_name: KRTAP13-1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
KRTAP21-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
Cons ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
KS ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
KRTAP21-1   10000 perm   2 sec   (5916 perm/sec)   p_kst 6.092000e-01   p_cons 2.836000e-01   p_joint 5.314000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP21-1.4_242_10000_0.6092_0.2836_0.5314.png
                gene_name: KRTAP21-1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 40 percent done.
KRTAP4-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KRTAP4-2   10000 perm   2 sec   (6113 perm/sec)   p_kst 2.322000e-01   p_cons 1.503000e-01   p_joint 1.857000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-2.4_415_10000_0.2322_0.1503_0.1857.png
                gene_name: KRTAP4-2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
KRTAP4-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
Cons ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
KS ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
KRTAP4-3   10000 perm   2 sec   (6080 perm/sec)   p_kst 2.409000e-01   p_cons 5.643000e-01   p_joint 4.366000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-3.4_592_10000_0.2409_0.5643_0.4366.png
                gene_name: KRTAP4-3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 44 percent done.
KRTAP6-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
KS ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
KRTAP6-2   10000 perm   1 sec   (6885 perm/sec)   p_kst 3.862000e-01   p_cons 7.328000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP6-2.4_192_10000_0.3862_0.7328_1.png
                gene_name: KRTAP6-2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
KRTAP8-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
Cons ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
KS ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KRTAP8-1   10000 perm   1 sec   (6775 perm/sec)   p_kst 2.675000e-01   p_cons 4.705000e-01   p_joint 4.415000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP8-1.4_196_10000_0.2675_0.4705_0.4415.png
                gene_name: KRTAP8-1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
KRTAP9-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KRTAP9-2   10000 perm   2 sec   (6003 perm/sec)   p_kst 3.675000e-01   p_cons 8.438000e-01   p_joint 5.276000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP9-2.4_529_10000_0.3675_0.8438_0.5276.png
                gene_name: KRTAP9-2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
LACRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
KS ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
LACRT   10000 perm   2 sec   (6360 perm/sec)   p_kst 9.047000e-01   p_cons 6.208000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/LACRT.4_437_10000_0.9047_0.6208_1.png
                gene_name: LACRT
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
KRTAP12-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
Cons ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
KS ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
KRTAP12-2   10000 perm   1 sec   (7223 perm/sec)   p_kst 2.150000e-01   p_cons 4.084000e-01   p_joint 3.851000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP12-2.3_445_10000_0.215_0.4084_0.3851.png
                gene_name: KRTAP12-2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
KRTAP13-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
Cons ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
KS ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
KRTAP13-4   10000 perm   2 sec   (6353 perm/sec)   p_kst 8.801000e-01   p_cons 9.680000e-02   p_joint 5.159000e-01

Joint ci ratio: 3.219540e-02	ci left: 4.187837e-01	ci right 4.325379e-01	k: 8513	n:20000
Cons ci ratio: 8.570058e-02	ci left: 9.062716e-02	ci right 9.879111e-02	k: 1893	n:20000
KS ci ratio: 1.035519e-02	ci left: 8.729270e-01	ci right 8.820629e-01	k: 17551	n:20000
KRTAP13-4   20000 perm   4 sec   (5506 perm/sec)   p_kst 8.775500e-01   p_cons 9.465000e-02   p_joint 4.256500e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-4.3_485_20000_0.87755_0.09465_0.42565.png
                gene_name: KRTAP13-4
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 54 percent done.
KRTAP19-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
Cons ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
KRTAP19-3   10000 perm   2 sec   (6427 perm/sec)   p_kst 7.520000e-02   p_cons 5.842000e-01   p_joint 2.207000e-01

Joint ci ratio: 4.545038e-02	ci left: 2.648983e-01	ci right 2.772684e-01	k: 5421	n:20000
Cons ci ratio: 2.312445e-02	ci left: 5.827450e-01	ci right 5.964289e-01	k: 11792	n:20000
KS ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
KRTAP19-3   20000 perm   4 sec   (5593 perm/sec)   p_kst 7.840000e-02   p_cons 5.896000e-01   p_joint 2.710500e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP19-3.3_250_20000_0.0784_0.5896_0.27105.png
                gene_name: KRTAP19-3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 56 percent done.
KRTAP23-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
KS ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
KRTAP23-1   10000 perm   1 sec   (6891 perm/sec)   p_kst 9.008000e-01   p_cons 4.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP23-1.3_202_10000_0.9008_0.469_1.png
                gene_name: KRTAP23-1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
KRTAP4-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
Cons ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
KS ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
KRTAP4-4   10000 perm   2 sec   (6648 perm/sec)   p_kst 9.842000e-01   p_cons 1.640000e-01   p_joint 4.941000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-4.3_505_10000_0.9842_0.164_0.4941.png
                gene_name: KRTAP4-4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 60 percent done.
KRTAP5-9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
Cons ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
KS ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
KRTAP5-9   10000 perm   1 sec   (6674 perm/sec)   p_kst 1.767000e-01   p_cons 8.066000e-01   p_joint 5.987000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-9.3_514_10000_0.1767_0.8066_0.5987.png
                gene_name: KRTAP5-9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 61 percent done.
KRTAP6-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.079455e-02	ci left: 7.721552e-01	ci right 7.884812e-01	k: 7804	n:10000
KS ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
KRTAP6-1   10000 perm   2 sec   (6578 perm/sec)   p_kst 8.569000e-01   p_cons 7.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP6-1.3_220_10000_0.8569_0.7804_1.png
                gene_name: KRTAP6-1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
KRTAP6-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
KRTAP6-3   10000 perm   2 sec   (6462 perm/sec)   p_kst 8.330000e-02   p_cons 7.780000e-02   p_joint 3.180000e-02

Joint ci ratio: 1.176346e-01	ci left: 4.949781e-02	ci right 5.573307e-02	k: 1051	n:20000
Cons ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
KS ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
KRTAP6-3   20000 perm   4 sec   (5526 perm/sec)   p_kst 8.275000e-02   p_cons 7.950000e-02   p_joint 5.255000e-02

Joint ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
Cons ci ratio: 8.499966e-02	ci left: 6.337929e-02	ci right 6.903840e-02	k: 1985	n:30000
KS ci ratio: 7.560695e-02	ci left: 7.911578e-02	ci right 8.536540e-02	k: 2466	n:30000
KRTAP6-3   30000 perm   6 sec   (5245 perm/sec)   p_kst 8.220000e-02   p_cons 6.616667e-02   p_joint 4.056667e-02

Joint ci ratio: 1.118339e-01	ci left: 2.813107e-02	ci right 3.148765e-02	k: 1191	n:40000
Cons ci ratio: 6.845062e-02	ci left: 7.317535e-02	ci right 7.838643e-02	k: 3030	n:40000
KS ci ratio: 6.584194e-02	ci left: 7.871359e-02	ci right 8.409737e-02	k: 3255	n:40000
KRTAP6-3   40000 perm   8 sec   (5035 perm/sec)   p_kst 8.137500e-02   p_cons 7.575000e-02   p_joint 2.977500e-02

Joint ci ratio: 8.142468e-02	ci left: 4.249335e-02	ci right 4.611979e-02	k: 2214	n:50000
Cons ci ratio: 6.085785e-02	ci left: 7.428347e-02	ci right 7.896583e-02	k: 3830	n:50000
KS ci ratio: 5.914442e-02	ci left: 7.836643e-02	ci right 8.316238e-02	k: 4037	n:50000
KRTAP6-3   50000 perm   10 sec   (4885 perm/sec)   p_kst 8.074000e-02   p_cons 7.660000e-02   p_joint 4.428000e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP6-3.3_337_50000_0.08074_0.0766_0.04428.png
                gene_name: KRTAP6-3
               theta_stop: 0.081 
                    nperm: 50000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 65 percent done.
KRTAP9-8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
KS ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
KRTAP9-8   10000 perm   2 sec   (6457 perm/sec)   p_kst 7.361000e-01   p_cons 8.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP9-8.3_484_10000_0.7361_0.8664_1.png
                gene_name: KRTAP9-8
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
L3MBTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
L3MBTL   10000 perm   2 sec   (5469 perm/sec)   p_kst 3.702000e-01   p_cons 6.965000e-01   p_joint 5.584000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL.3_2488_10000_0.3702_0.6965_0.5584.png
                gene_name: L3MBTL
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 68 percent done.
LAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
Cons ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
KS ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
LAD1   10000 perm   2 sec   (5801 perm/sec)   p_kst 5.346000e-01   p_cons 9.102000e-01   p_joint 8.440000e-01

Outputting figure to mutsig2_images.part000000000094/LAD1.3_1594_10000_0.5346_0.9102_0.844.png
                gene_name: LAD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 70 percent done.
LAIR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KS ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
LAIR1   10000 perm   2 sec   (6466 perm/sec)   p_kst 1.355000e-01   p_cons 1.130000e-02   p_joint 7.000000e-03

Joint ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
Cons ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
KS ci ratio: 6.974495e-02	ci left: 1.316222e-01	ci right 1.411837e-01	k: 2727	n:20000
LAIR1   20000 perm   4 sec   (5577 perm/sec)   p_kst 1.363500e-01   p_cons 1.035000e-02   p_joint 4.600000e-03

Joint ci ratio: 2.645252e-01	ci left: 6.305714e-03	ci right 8.258200e-03	k: 217	n:30000
Cons ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
KS ci ratio: 5.736144e-02	ci left: 1.308226e-01	ci right 1.385816e-01	k: 4040	n:30000
LAIR1   30000 perm   6 sec   (5245 perm/sec)   p_kst 1.346667e-01   p_cons 1.086667e-02   p_joint 7.233333e-03

Joint ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
Cons ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
KS ci ratio: 4.985318e-02	ci left: 1.305274e-01	ci right 1.372258e-01	k: 5354	n:40000
LAIR1   40000 perm   8 sec   (5031 perm/sec)   p_kst 1.338500e-01   p_cons 1.067500e-02   p_joint 5.175000e-03

Joint ci ratio: 1.964540e-01	ci left: 7.123666e-03	ci right 8.694274e-03	k: 394	n:50000
Cons ci ratio: 1.651664e-01	ci left: 1.021932e-02	ci right 1.207809e-02	k: 556	n:50000
KS ci ratio: 4.470488e-02	ci left: 1.302924e-01	ci right 1.362702e-01	k: 6663	n:50000
LAIR1   50000 perm   10 sec   (4874 perm/sec)   p_kst 1.332600e-01   p_cons 1.112000e-02   p_joint 7.880000e-03

Joint ci ratio: 1.931682e-01	ci left: 6.158037e-03	ci right 7.490339e-03	k: 408	n:60000
Cons ci ratio: 1.501411e-01	ci left: 1.038937e-02	ci right 1.209173e-02	k: 673	n:60000
KS ci ratio: 4.085051e-02	ci left: 1.303254e-01	ci right 1.357768e-01	k: 7982	n:60000
LAIR1   60000 perm   13 sec   (4749 perm/sec)   p_kst 1.330333e-01   p_cons 1.121667e-02   p_joint 6.800000e-03

Joint ci ratio: 1.852329e-01	ci left: 5.768140e-03	ci right 6.959050e-03	k: 444	n:70000
Cons ci ratio: 1.382354e-01	ci left: 1.057154e-02	ci right 1.215507e-02	k: 794	n:70000
KS ci ratio: 3.770477e-02	ci left: 1.312294e-01	ci right 1.362867e-01	k: 9362	n:70000
LAIR1   70000 perm   15 sec   (4638 perm/sec)   p_kst 1.337429e-01   p_cons 1.134286e-02   p_joint 6.342857e-03

Joint ci ratio: 1.123556e-01	ci left: 1.414477e-02	ci right 1.584067e-02	k: 1198	n:80000
Cons ci ratio: 1.400348e-01	ci left: 9.020350e-03	ci right 1.039056e-02	k: 775	n:80000
KS ci ratio: 3.536997e-02	ci left: 1.307408e-01	ci right 1.354608e-01	k: 10647	n:80000
LAIR1   80000 perm   18 sec   (4536 perm/sec)   p_kst 1.330875e-01   p_cons 9.687500e-03   p_joint 1.497500e-02

Joint ci ratio: 1.105504e-01	ci left: 1.301556e-02	ci right 1.454935e-02	k: 1239	n:90000
Cons ci ratio: 1.307467e-01	ci left: 9.241956e-03	ci right 1.054548e-02	k: 889	n:90000
KS ci ratio: 3.334554e-02	ci left: 1.308871e-01	ci right 1.353366e-01	k: 11979	n:90000
LAIR1   90000 perm   20 sec   (4441 perm/sec)   p_kst 1.331000e-01   p_cons 9.877778e-03   p_joint 1.376667e-02

Joint ci ratio: 1.139786e-01	ci left: 1.102328e-02	ci right 1.236527e-02	k: 1168	n:100000
Cons ci ratio: 1.246684e-01	ci left: 9.179316e-03	ci right 1.040937e-02	k: 978	n:100000
KS ci ratio: 3.161534e-02	ci left: 1.311394e-01	ci right 1.353619e-01	k: 13324	n:100000
LAIR1   100000 perm   23 sec   (4356 perm/sec)   p_kst 1.332400e-01   p_cons 9.780000e-03   p_joint 1.168000e-02

Joint ci ratio: 1.164815e-01	ci left: 9.596958e-03	ci right 1.079271e-02	k: 1120	n:110000
Cons ci ratio: 1.184729e-01	ci left: 9.270387e-03	ci right 1.044658e-02	k: 1083	n:110000
KS ci ratio: 3.013160e-02	ci left: 1.313326e-01	ci right 1.353594e-01	k: 14667	n:110000
LAIR1   110000 perm   26 sec   (4269 perm/sec)   p_kst 1.333364e-01   p_cons 9.845455e-03   p_joint 1.018182e-02

Joint ci ratio: 1.204429e-01	ci left: 8.222717e-03	ci right 9.284561e-03	k: 1049	n:120000
Cons ci ratio: 1.141403e-01	ci left: 9.177467e-03	ci right 1.029642e-02	k: 1167	n:120000
KS ci ratio: 2.886387e-02	ci left: 1.312988e-01	ci right 1.351523e-01	k: 15986	n:120000
LAIR1   120000 perm   29 sec   (4183 perm/sec)   p_kst 1.332167e-01   p_cons 9.725000e-03   p_joint 8.741667e-03

Joint ci ratio: 1.177449e-01	ci left: 7.955830e-03	ci right 8.958589e-03	k: 1098	n:130000
Cons ci ratio: 1.094588e-01	ci left: 9.234201e-03	ci right 1.031091e-02	k: 1269	n:130000
KS ci ratio: 2.784687e-02	ci left: 1.304243e-01	ci right 1.341152e-01	k: 17194	n:130000
LAIR1   130000 perm   32 sec   (4108 perm/sec)   p_kst 1.322615e-01   p_cons 9.761538e-03   p_joint 8.446154e-03

Joint ci ratio: 1.072612e-01	ci left: 8.942854e-03	ci right 9.963333e-03	k: 1322	n:140000
Cons ci ratio: 1.057780e-01	ci left: 9.200161e-03	ci right 1.023458e-02	k: 1359	n:140000
KS ci ratio: 2.685623e-02	ci left: 1.303020e-01	ci right 1.338561e-01	k: 18490	n:140000
LAIR1   140000 perm   35 sec   (4039 perm/sec)   p_kst 1.320714e-01   p_cons 9.707143e-03   p_joint 9.442857e-03

Joint ci ratio: 1.206651e-01	ci left: 6.564901e-03	ci right 7.414323e-03	k: 1047	n:150000
Cons ci ratio: 9.535947e-02	ci left: 1.060848e-02	ci right 1.167721e-02	k: 1670	n:150000
KS ci ratio: 2.596279e-02	ci left: 1.302113e-01	ci right 1.336430e-01	k: 19788	n:150000
LAIR1   150000 perm   38 sec   (3971 perm/sec)   p_kst 1.319200e-01   p_cons 1.113333e-02   p_joint 6.980000e-03

Joint ci ratio: 1.186571e-01	ci left: 6.372822e-03	ci right 7.182706e-03	k: 1083	n:160000
Cons ci ratio: 9.202906e-02	ci left: 1.069621e-02	ci right 1.173412e-02	k: 1793	n:160000
KS ci ratio: 2.512621e-02	ci left: 1.303761e-01	ci right 1.336998e-01	k: 21125	n:160000
LAIR1   160000 perm   41 sec   (3906 perm/sec)   p_kst 1.320312e-01   p_cons 1.120625e-02   p_joint 6.768750e-03

Joint ci ratio: 1.174336e-01	ci left: 6.129204e-03	ci right 6.899535e-03	k: 1106	n:170000
Cons ci ratio: 8.956988e-02	ci left: 1.064188e-02	ci right 1.164548e-02	k: 1893	n:170000
KS ci ratio: 2.435812e-02	ci left: 1.305933e-01	ci right 1.338193e-01	k: 22474	n:170000
LAIR1   170000 perm   44 sec   (3842 perm/sec)   p_kst 1.322000e-01   p_cons 1.113529e-02   p_joint 6.505882e-03

Joint ci ratio: 1.182095e-01	ci left: 5.713134e-03	ci right 6.436246e-03	k: 1092	n:180000
Cons ci ratio: 8.698954e-02	ci left: 1.067003e-02	ci right 1.164581e-02	k: 2007	n:180000
KS ci ratio: 2.369885e-02	ci left: 1.303786e-01	ci right 1.335110e-01	k: 23749	n:180000
LAIR1   180000 perm   48 sec   (3780 perm/sec)   p_kst 1.319389e-01   p_cons 1.115000e-02   p_joint 6.066667e-03

Joint ci ratio: 1.159048e-01	ci left: 5.637228e-03	ci right 6.335868e-03	k: 1136	n:190000
Cons ci ratio: 8.488342e-02	ci left: 1.062859e-02	ci right 1.157589e-02	k: 2108	n:190000
KS ci ratio: 2.306488e-02	ci left: 1.304391e-01	ci right 1.334879e-01	k: 25072	n:190000
LAIR1   190000 perm   51 sec   (3718 perm/sec)   p_kst 1.319579e-01   p_cons 1.109474e-02   p_joint 5.978947e-03

Joint ci ratio: 1.199683e-01	ci left: 4.991326e-03	ci right 5.633141e-03	k: 1061	n:200000
Cons ci ratio: 8.269647e-02	ci left: 1.065033e-02	ci right 1.157392e-02	k: 2221	n:200000
KS ci ratio: 2.246402e-02	ci left: 1.306487e-01	ci right 1.336219e-01	k: 26426	n:200000
LAIR1   200000 perm   55 sec   (3659 perm/sec)   p_kst 1.321300e-01   p_cons 1.110500e-02   p_joint 5.305000e-03

Joint ci ratio: 1.035267e-01	ci left: 6.429754e-03	ci right 7.136344e-03	k: 1423	n:210000
Cons ci ratio: 8.039222e-02	ci left: 1.074495e-02	ci right 1.164957e-02	k: 2350	n:210000
KS ci ratio: 2.190279e-02	ci left: 1.308915e-01	ci right 1.337948e-01	k: 27791	n:210000
LAIR1   210000 perm   58 sec   (3604 perm/sec)   p_kst 1.323381e-01   p_cons 1.119048e-02   p_joint 6.776190e-03

Joint ci ratio: 1.029622e-01	ci left: 6.208305e-03	ci right 6.886612e-03	k: 1439	n:220000
Cons ci ratio: 7.822256e-02	ci left: 1.084466e-02	ci right 1.173192e-02	k: 2482	n:220000
KS ci ratio: 2.141508e-02	ci left: 1.307556e-01	ci right 1.335905e-01	k: 29077	n:220000
LAIR1   220000 perm   62 sec   (3549 perm/sec)   p_kst 1.321682e-01   p_cons 1.128182e-02   p_joint 6.540909e-03

Joint ci ratio: 1.046350e-01	ci left: 5.747734e-03	ci right 6.386549e-03	k: 1394	n:230000
Cons ci ratio: 7.630813e-02	ci left: 1.091041e-02	ci right 1.178023e-02	k: 2608	n:230000
KS ci ratio: 2.096811e-02	ci left: 1.305282e-01	ci right 1.332984e-01	k: 30339	n:230000
LAIR1   230000 perm   66 sec   (3495 perm/sec)   p_kst 1.319087e-01   p_cons 1.133913e-02   p_joint 6.060870e-03

Joint ci ratio: 1.042357e-01	ci left: 5.552852e-03	ci right 6.167507e-03	k: 1405	n:240000
Cons ci ratio: 7.479093e-02	ci left: 1.089322e-02	ci right 1.174365e-02	k: 2715	n:240000
KS ci ratio: 2.051548e-02	ci left: 1.306813e-01	ci right 1.333942e-01	k: 31688	n:240000
LAIR1   240000 perm   70 sec   (3446 perm/sec)   p_kst 1.320333e-01   p_cons 1.131250e-02   p_joint 5.854167e-03

Joint ci ratio: 1.086061e-01	ci left: 4.902355e-03	ci right 5.469210e-03	k: 1295	n:250000
Cons ci ratio: 7.309930e-02	ci left: 1.095611e-02	ci right 1.179128e-02	k: 2842	n:250000
KS ci ratio: 2.013979e-02	ci left: 1.302692e-01	ci right 1.329234e-01	k: 32898	n:250000
LAIR1   250000 perm   74 sec   (3398 perm/sec)   p_kst 1.315920e-01   p_cons 1.136800e-02   p_joint 5.180000e-03

Joint ci ratio: 1.087858e-01	ci left: 4.698810e-03	ci right 5.243085e-03	k: 1291	n:260000
Cons ci ratio: 7.166408e-02	ci left: 1.096902e-02	ci right 1.178808e-02	k: 2957	n:260000
KS ci ratio: 1.974669e-02	ci left: 1.303181e-01	ci right 1.329209e-01	k: 34220	n:260000
LAIR1   260000 perm   78 sec   (3350 perm/sec)   p_kst 1.316154e-01   p_cons 1.137308e-02   p_joint 4.965385e-03

Joint ci ratio: 1.077122e-01	ci left: 4.618458e-03	ci right 5.147811e-03	k: 1317	n:270000
Cons ci ratio: 7.036814e-02	ci left: 1.096293e-02	ci right 1.176612e-02	k: 3067	n:270000
KS ci ratio: 1.936068e-02	ci left: 1.305409e-01	ci right 1.330966e-01	k: 35590	n:270000
LAIR1   270000 perm   82 sec   (3305 perm/sec)   p_kst 1.318148e-01   p_cons 1.135926e-02   p_joint 4.877778e-03

Joint ci ratio: 9.690051e-02	ci left: 5.529042e-03	ci right 6.095546e-03	k: 1626	n:280000
Cons ci ratio: 6.889923e-02	ci left: 1.103463e-02	ci right 1.182553e-02	k: 3199	n:280000
KS ci ratio: 1.900446e-02	ci left: 1.306522e-01	ci right 1.331625e-01	k: 36933	n:280000
LAIR1   280000 perm   86 sec   (3260 perm/sec)   p_kst 1.319036e-01   p_cons 1.142500e-02   p_joint 5.807143e-03

Outputting figure to mutsig2_images.part000000000094/LAIR1.3_904_280000_0.1319_0.011425_0.0058071.png
                gene_name: LAIR1
               theta_stop: 0.097 
                    nperm: 280000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0058 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0061 

Current progress: 72 percent done.
LAIR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
KS ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
LAIR2   10000 perm   1 sec   (6751 perm/sec)   p_kst 2.895000e-01   p_cons 2.040000e-02   p_joint 4.920000e-02

Joint ci ratio: 1.534422e-01	ci left: 2.917075e-02	ci right 3.406667e-02	k: 631	n:20000
Cons ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
KS ci ratio: 4.333415e-02	ci left: 2.840152e-01	ci right 2.966458e-01	k: 5806	n:20000
LAIR2   20000 perm   3 sec   (5778 perm/sec)   p_kst 2.903000e-01   p_cons 2.100000e-02   p_joint 3.155000e-02

Joint ci ratio: 1.075544e-01	ci left: 4.011513e-02	ci right 4.470736e-02	k: 1271	n:30000
Cons ci ratio: 1.654543e-01	ci left: 1.684538e-02	ci right 1.991557e-02	k: 550	n:30000
KS ci ratio: 3.513909e-02	ci left: 2.880191e-01	ci right 2.983543e-01	k: 8795	n:30000
LAIR2   30000 perm   5 sec   (5455 perm/sec)   p_kst 2.931667e-01   p_cons 1.833333e-02   p_joint 4.236667e-02

Joint ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
Cons ci ratio: 1.432551e-01	ci left: 1.705728e-02	ci right 1.971329e-02	k: 734	n:40000
KS ci ratio: 3.040935e-02	ci left: 2.890152e-01	ci right 2.979648e-01	k: 11739	n:40000
LAIR2   40000 perm   8 sec   (5228 perm/sec)   p_kst 2.934750e-01   p_cons 1.835000e-02   p_joint 4.100000e-02

Joint ci ratio: 8.412303e-02	ci left: 3.986648e-02	ci right 4.338699e-02	k: 2080	n:50000
Cons ci ratio: 1.273396e-01	ci left: 1.741439e-02	ci right 1.980197e-02	k: 929	n:50000
KS ci ratio: 2.717668e-02	ci left: 2.898294e-01	ci right 2.978345e-01	k: 14691	n:50000
LAIR2   50000 perm   10 sec   (5048 perm/sec)   p_kst 2.938200e-01   p_cons 1.858000e-02   p_joint 4.160000e-02

Joint ci ratio: 8.171956e-02	ci left: 3.542202e-02	ci right 3.845631e-02	k: 2215	n:60000
Cons ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
KS ci ratio: 2.483714e-02	ci left: 2.897087e-01	ci right 2.970113e-01	k: 17601	n:60000
LAIR2   60000 perm   12 sec   (4913 perm/sec)   p_kst 2.933500e-01   p_cons 1.850000e-02   p_joint 3.691667e-02

Joint ci ratio: 8.246342e-02	ci left: 2.998038e-02	ci right 3.257295e-02	k: 2188	n:70000
Cons ci ratio: 1.083019e-01	ci left: 1.737556e-02	ci right 1.937893e-02	k: 1285	n:70000
KS ci ratio: 2.298496e-02	ci left: 2.901566e-01	ci right 2.969177e-01	k: 20547	n:70000
LAIR2   70000 perm   15 sec   (4792 perm/sec)   p_kst 2.935286e-01   p_cons 1.835714e-02   p_joint 3.125714e-02

Joint ci ratio: 7.258482e-02	ci left: 3.389678e-02	ci right 3.646207e-02	k: 2813	n:80000
Cons ci ratio: 1.018991e-01	ci left: 1.723621e-02	ci right 1.909897e-02	k: 1452	n:80000
KS ci ratio: 2.154228e-02	ci left: 2.895733e-01	ci right 2.958917e-01	k: 23418	n:80000
LAIR2   80000 perm   17 sec   (4682 perm/sec)   p_kst 2.927250e-01   p_cons 1.815000e-02   p_joint 3.516250e-02

Joint ci ratio: 7.271839e-02	ci left: 3.013921e-02	ci right 3.242446e-02	k: 2814	n:90000
Cons ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
KS ci ratio: 2.032137e-02	ci left: 2.895291e-01	ci right 2.954842e-01	k: 26325	n:90000
LAIR2   90000 perm   20 sec   (4583 perm/sec)   p_kst 2.925000e-01   p_cons 1.821111e-02   p_joint 3.126667e-02

Outputting figure to mutsig2_images.part000000000094/LAIR2.3_479_90000_0.2925_0.018211_0.031267.png
                gene_name: LAIR2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 74 percent done.
KRTAP10-8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
KRTAP10-8   10000 perm   1 sec   (7158 perm/sec)   p_kst 8.069000e-01   p_cons 8.455000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP10-8.2_784_10000_0.8069_0.8455_1.png
                gene_name: KRTAP10-8
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KRTAP12-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
Cons ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
KRTAP12-1   10000 perm   1 sec   (7128 perm/sec)   p_kst 8.881000e-01   p_cons 2.690000e-02   p_joint 6.110000e-02

Joint ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
Cons ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
KS ci ratio: 9.914359e-03	ci left: 8.821243e-01	ci right 8.909630e-01	k: 17732	n:20000
KRTAP12-1   20000 perm   3 sec   (6042 perm/sec)   p_kst 8.866000e-01   p_cons 2.625000e-02   p_joint 5.370000e-02

Joint ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
Cons ci ratio: 1.376166e-01	ci left: 2.451849e-02	ci right 2.817402e-02	k: 789	n:30000
KS ci ratio: 8.078617e-03	ci left: 8.833633e-01	ci right 8.905616e-01	k: 26610	n:30000
KRTAP12-1   30000 perm   5 sec   (5651 perm/sec)   p_kst 8.870000e-01   p_cons 2.630000e-02   p_joint 4.750000e-02

Joint ci ratio: 8.509808e-02	ci left: 4.822732e-02	ci right 5.253826e-02	k: 2014	n:40000
Cons ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
KS ci ratio: 6.976071e-03	ci left: 8.844387e-01	ci right 8.906549e-01	k: 35503	n:40000
KRTAP12-1   40000 perm   7 sec   (5411 perm/sec)   p_kst 8.875750e-01   p_cons 2.567500e-02   p_joint 5.035000e-02

Joint ci ratio: 7.638203e-02	ci left: 4.812547e-02	ci right 5.196698e-02	k: 2501	n:50000
Cons ci ratio: 1.078955e-01	ci left: 2.433059e-02	ci right 2.712484e-02	k: 1285	n:50000
KS ci ratio: 6.253103e-03	ci left: 8.843340e-01	ci right 8.899010e-01	k: 44357	n:50000
KRTAP12-1   50000 perm   10 sec   (5254 perm/sec)   p_kst 8.871400e-01   p_cons 2.570000e-02   p_joint 5.002000e-02

Joint ci ratio: 6.959780e-02	ci left: 4.846627e-02	ci right 5.197740e-02	k: 3012	n:60000
Cons ci ratio: 9.873148e-02	ci left: 2.433464e-02	ci right 2.687820e-02	k: 1535	n:60000
KS ci ratio: 5.701293e-03	ci left: 8.848268e-01	ci right 8.899024e-01	k: 53243	n:60000
KRTAP12-1   60000 perm   12 sec   (5092 perm/sec)   p_kst 8.873833e-01   p_cons 2.558333e-02   p_joint 5.020000e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP12-1.2_295_60000_0.88738_0.025583_0.0502.png
                gene_name: KRTAP12-1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 77 percent done.
KRTAP19-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
KS ci ratio: 2.295152e-02	ci left: 7.360335e-01	ci right 7.532238e-01	k: 7447	n:10000
KRTAP19-1   10000 perm   1 sec   (6967 perm/sec)   p_kst 7.447000e-01   p_cons 5.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP19-1.2_275_10000_0.7447_0.5003_1.png
                gene_name: KRTAP19-1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
KRTAP21-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
KRTAP21-2   10000 perm   1 sec   (7054 perm/sec)   p_kst 4.984000e-01   p_cons 6.521000e-01   p_joint 7.206000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP21-2.2_254_10000_0.4984_0.6521_0.7206.png
                gene_name: KRTAP21-2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 81 percent done.
KRTAP3-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
Cons ci ratio: 6.788960e-04	ci left: 9.992777e-01	ci right 9.999758e-01	k: 9998	n:10000
KS ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KRTAP3-3   10000 perm   1 sec   (7085 perm/sec)   p_kst 2.021000e-01   p_cons 9.998000e-01   p_joint 3.819000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP3-3.2_301_10000_0.2021_0.9998_0.3819.png
                gene_name: KRTAP3-3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 82 percent done.
KRTAP4-12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
Cons ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
KS ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
KRTAP4-12   10000 perm   1 sec   (7032 perm/sec)   p_kst 1.524000e-01   p_cons 8.079000e-01   p_joint 5.960000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-12.2_610_10000_0.1524_0.8079_0.596.png
                gene_name: KRTAP4-12
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 84 percent done.
KRTAP4-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
Cons ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
KS ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
KRTAP4-5   10000 perm   1 sec   (6851 perm/sec)   p_kst 7.857000e-01   p_cons 6.003000e-01   p_joint 8.550000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-5.2_550_10000_0.7857_0.6003_0.855.png
                gene_name: KRTAP4-5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 86 percent done.
KRTAP5-10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
Cons ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
KRTAP5-10   10000 perm   2 sec   (6352 perm/sec)   p_kst 4.745000e-01   p_cons 3.014000e-01   p_joint 3.476000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-10.2_613_10000_0.4745_0.3014_0.3476.png
                gene_name: KRTAP5-10
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 88 percent done.
KRTAP5-11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.383810e-03	ci left: 9.908300e-01	ci right 9.942737e-01	k: 9927	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
KRTAP5-11   10000 perm   1 sec   (6822 perm/sec)   p_kst 6.037000e-01   p_cons 9.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP5-11.2_475_10000_0.6037_0.9927_1.png
                gene_name: KRTAP5-11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
KRTAP5-8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
KS ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KRTAP5-8   10000 perm   1 sec   (6824 perm/sec)   p_kst 4.692000e-01   p_cons 4.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP5-8.2_568_10000_0.4692_0.411_1.png
                gene_name: KRTAP5-8
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
KTI12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 1.134314e-02	ci left: 9.173946e-01	ci right 9.279576e-01	k: 9228	n:10000
KTI12   10000 perm   2 sec   (6535 perm/sec)   p_kst 9.228000e-01   p_cons 4.923000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KTI12.2_1069_10000_0.9228_0.4923_1.png
                gene_name: KTI12
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
Cons ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
KS ci ratio: 5.351485e-02	ci left: 3.397522e-01	ci right 3.585358e-01	k: 3491	n:10000
KY   10000 perm   2 sec   (6033 perm/sec)   p_kst 3.491000e-01   p_cons 1.423000e-01   p_joint 1.596000e-01

Outputting figure to mutsig2_images.part000000000094/KY.2_2030_10000_0.3491_0.1423_0.1596.png
                gene_name: KY
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 95 percent done.
L2HGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
L2HGDH   10000 perm   2 sec   (6476 perm/sec)   p_kst 4.920000e-01   p_cons 2.187000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/L2HGDH.2_1432_10000_0.492_0.2187_1.png
                gene_name: L2HGDH
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
L3MBTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
L3MBTL2   10000 perm   2 sec   (5802 perm/sec)   p_kst 3.306000e-01   p_cons 3.672000e-01   p_joint 4.356000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL2.2_2186_10000_0.3306_0.3672_0.4356.png
                gene_name: L3MBTL2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 98 percent done.
LAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
Cons ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
KS ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
LAG3   10000 perm   2 sec   (6066 perm/sec)   p_kst 2.506000e-01   p_cons 2.907000e-01   p_joint 6.198000e-01

Outputting figure to mutsig2_images.part000000000094/LAG3.2_1610_10000_0.2506_0.2907_0.6198.png
                gene_name: LAG3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000094
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 94 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4422130: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000095> was used as the working directory.
Started at Wed Oct 24 17:58:01 2012
Results reported at Wed Oct 24 18:16:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000095.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000095.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 95  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000095.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1141.52 sec.
    Max Memory :      5415 MB
    Max Swap   :      7762 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
95
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 95
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 95: processing genes 8505 - 8595
Calculating significance of each gene.
Using projection method.
8505	LAMA1	1.000000e+00
8506	LAMA2	1
8507	LAMA3	9.998731e-01
8508	LAMA4	9.870357e-01
8509	LAMA5	1.000000e+00
8510	LAMB1	9.790813e-01
8511	LAMB2	6.954414e-01
8512	LAMB3	5.498295e-01
8513	LAMB4	9.913068e-01
8514	LAMC1	2.690993e-01
8515	LAMC2	9.810184e-01
8516	LAMC3	9.407463e-01
8517	LAMP1	8.593668e-01
8518	LAMP2	2.084567e-01
8519	LAMP3	2.050951e-01
8520	LANCL1	1
8521	LANCL2	3.039649e-01
8522	LANCL3	1.367484e-01
8523	LAP3	1
8524	LAPTM4A	1
8525	LAPTM4B	1
8526	LAPTM5	3.736344e-01
8527	LARGE	9.667680e-01
8528	LARP1	9.499231e-02
8529	LARP1B	7.794097e-01
8530	LARP4	1.668678e-01
8531	LARP4B	1.952894e-01
8532	LARP6	5.596629e-01
8533	LARP7	8.200460e-01
8534	LARS	4.741436e-01
8535	LARS2	1
8536	LAS1L	1
8537	LASP1	1
8538	LASS1	1
8539	LASS2	3.819228e-01
8540	LASS3	5.548873e-01
8541	LASS4	7.096904e-01
8542	LASS5	1
8543	LASS6	6.841434e-01
8544	LAT	1.690859e-01
8545	LAT2	3.616711e-01
8546	LATS1	3.576933e-01
8547	LATS2	8.116437e-01
8548	LAX1	3.025964e-02
8549	LAYN	5.041768e-01
8550	LBH	3.067387e-01
8551	LBP	5.570365e-01
8552	LBR	1
8553	LBX1	2.785981e-01
8554	LBX2	5.902190e-01
8555	LBXCOR1	3.571572e-01
8556	LCA5	7.528213e-01
8557	LCA5L	1
8558	LCAT	8.876955e-01
8559	LCE1A	1
8560	LCE1B	5.887797e-02
8561	LCE1C	5.642707e-01
8562	LCE1D	1
8563	LCE1E	9.932959e-03
8564	LCE1F	7.125004e-03
8565	LCE2A	1.144475e-02
8566	LCE2B	5.650478e-03
8567	LCE2C	1
8568	LCE2D	1.241077e-01
8569	LCE3A	7.899057e-02
8570	LCE3D	1.917970e-01
8571	LCE3E	3.589152e-03
In gene LCE4A the following bins exceed PROBCAP:
    LUAD-17-Z044-TP	categ 6	N = 304     n = 1	mu =   6.69e-07
8572	LCE4A	2.846841e-02
8573	LCE5A	2.403999e-02
8574	LCK	4.214941e-01
8575	LCLAT1	1.806682e-01
8576	LCMT1	5.456986e-01
8577	LCMT2	8.341137e-01
8578	LCN1	2.508442e-01
8579	LCN10	1
8580	LCN12	1
8581	LCN15	4.982249e-01
8582	LCN2	5.366881e-01
8583	LCN6	1
8584	LCN8	1
8585	LCN9	2.144803e-01
8586	LCNL1	1
8587	LCOR	1
8588	LCORL	6.824358e-01
8589	LCP1	2.488423e-01
8590	LCP2	4.477343e-01
8591	LCT	4.177121e-01
8592	LCTL	1
8593	LDB1	8.516378e-01
8594	LDB2	6.628903e-01
8595	LDB3	7.948159e-01
Done

Running MutSig 2:
Scatter job 95: processing genes 8505 - 8595
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LAMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
LAMA1   10000 perm   3 sec   (3271 perm/sec)   p_kst 7.037000e-01   p_cons 9.240000e-02   p_joint 3.096000e-01

Joint ci ratio: 3.871410e-02	ci left: 3.322891e-01	ci right 3.454578e-01	k: 6777	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 1.779201e-02	ci left: 7.018449e-01	ci right 7.144946e-01	k: 14164	n:20000
LAMA1   20000 perm   9 sec   (2349 perm/sec)   p_kst 7.082000e-01   p_cons 9.340000e-02   p_joint 3.388500e-01

Outputting figure to mutsig2_images.part000000000095/LAMA1.36_9480_20000_0.7082_0.0934_0.33885.png
                gene_name: LAMA1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 2 percent done.
LAMA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
Cons ci ratio: 2.301187e-02	ci left: 7.350228e-01	ci right 7.522350e-01	k: 7437	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
LAMA2   10000 perm   3 sec   (3497 perm/sec)   p_kst 1.277000e-01   p_cons 7.437000e-01   p_joint 2.408000e-01

Joint ci ratio: 4.521010e-02	ci left: 2.669831e-01	ci right 2.793829e-01	k: 5463	n:20000
Cons ci ratio: 1.614187e-02	ci left: 7.406625e-01	ci right 7.527657e-01	k: 14935	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
LAMA2   20000 perm   6 sec   (3249 perm/sec)   p_kst 1.216000e-01   p_cons 7.467500e-01   p_joint 2.731500e-01

Outputting figure to mutsig2_images.part000000000095/LAMA2.33_9629_20000_0.1216_0.74675_0.27315.png
                gene_name: LAMA2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 3 percent done.
LCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
LCT   10000 perm   2 sec   (4070 perm/sec)   p_kst 1.020000e-02   p_cons 5.560000e-02   p_joint 1.070000e-02

Joint ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
Cons ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
LCT   20000 perm   5 sec   (3760 perm/sec)   p_kst 1.045000e-02   p_cons 5.495000e-02   p_joint 1.350000e-02

Joint ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
Cons ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
KS ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
LCT   30000 perm   8 sec   (3640 perm/sec)   p_kst 1.060000e-02   p_cons 5.740000e-02   p_joint 1.183333e-02

Joint ci ratio: 2.262293e-01	ci left: 6.607120e-03	ci right 8.315554e-03	k: 297	n:40000
Cons ci ratio: 7.893414e-02	ci left: 5.577808e-02	ci right 6.038634e-02	k: 2322	n:40000
KS ci ratio: 1.965093e-01	ci left: 8.881628e-03	ci right 1.084051e-02	k: 393	n:40000
LCT   40000 perm   11 sec   (3559 perm/sec)   p_kst 9.825000e-03   p_cons 5.805000e-02   p_joint 7.425000e-03

Joint ci ratio: 1.762160e-01	ci left: 8.935976e-03	ci right 1.068164e-02	k: 489	n:50000
Cons ci ratio: 7.053332e-02	ci left: 5.612423e-02	ci right 6.024725e-02	k: 2908	n:50000
KS ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
LCT   50000 perm   14 sec   (3499 perm/sec)   p_kst 9.960000e-03   p_cons 5.816000e-02   p_joint 9.780000e-03

Joint ci ratio: 1.327867e-01	ci left: 1.336524e-02	ci right 1.528216e-02	k: 858	n:60000
Cons ci ratio: 6.408439e-02	ci left: 5.681577e-02	ci right 6.059372e-02	k: 3521	n:60000
KS ci ratio: 1.544881e-01	ci left: 9.795976e-03	ci right 1.145187e-02	k: 636	n:60000
LCT   60000 perm   17 sec   (3446 perm/sec)   p_kst 1.060000e-02   p_cons 5.868333e-02   p_joint 1.430000e-02

Joint ci ratio: 1.423683e-01	ci left: 9.951016e-03	ci right 1.148995e-02	k: 749	n:70000
Cons ci ratio: 5.912459e-02	ci left: 5.733610e-02	ci right 6.084342e-02	k: 4135	n:70000
KS ci ratio: 1.433374e-01	ci left: 9.813216e-03	ci right 1.134205e-02	k: 739	n:70000
LCT   70000 perm   21 sec   (3393 perm/sec)   p_kst 1.055714e-02   p_cons 5.907143e-02   p_joint 1.070000e-02

Joint ci ratio: 1.489129e-01	ci left: 7.947696e-03	ci right 9.238321e-03	k: 686	n:80000
Cons ci ratio: 5.549881e-02	ci left: 5.706857e-02	ci right 6.033853e-02	k: 4695	n:80000
KS ci ratio: 1.356875e-01	ci left: 9.623994e-03	ci right 1.103686e-02	k: 825	n:80000
LCT   80000 perm   24 sec   (3348 perm/sec)   p_kst 1.031250e-02   p_cons 5.868750e-02   p_joint 8.575000e-03

Joint ci ratio: 1.429246e-01	ci left: 7.696172e-03	ci right 8.891401e-03	k: 745	n:90000
Cons ci ratio: 5.240918e-02	ci left: 5.698641e-02	ci right 6.006434e-02	k: 5266	n:90000
KS ci ratio: 1.276674e-01	ci left: 9.704435e-03	ci right 1.103852e-02	k: 932	n:90000
LCT   90000 perm   27 sec   (3303 perm/sec)   p_kst 1.035556e-02   p_cons 5.851111e-02   p_joint 8.277778e-03

Joint ci ratio: 1.456641e-01	ci left: 6.666040e-03	ci right 7.722846e-03	k: 718	n:100000
Cons ci ratio: 4.988391e-02	ci left: 5.670734e-02	ci right 5.961835e-02	k: 5815	n:100000
KS ci ratio: 1.209197e-01	ci left: 9.770757e-03	ci right 1.103788e-02	k: 1039	n:100000
LCT   100000 perm   31 sec   (3265 perm/sec)   p_kst 1.039000e-02   p_cons 5.815000e-02   p_joint 7.180000e-03

Joint ci ratio: 1.417006e-01	ci left: 6.419306e-03	ci right 7.406960e-03	k: 759	n:110000
Cons ci ratio: 4.758063e-02	ci left: 5.673368e-02	ci right 5.950786e-02	k: 6392	n:110000
KS ci ratio: 1.150893e-01	ci left: 9.835372e-03	ci right 1.104519e-02	k: 1147	n:110000
LCT   110000 perm   34 sec   (3228 perm/sec)   p_kst 1.042727e-02   p_cons 5.810909e-02   p_joint 6.900000e-03

Joint ci ratio: 1.375252e-01	ci left: 6.262316e-03	ci right 7.195096e-03	k: 806	n:120000
Cons ci ratio: 4.551061e-02	ci left: 5.689837e-02	ci right 5.955636e-02	k: 6986	n:120000
KS ci ratio: 1.104737e-01	ci left: 9.809383e-03	ci right 1.096446e-02	k: 1245	n:120000
LCT   120000 perm   38 sec   (3189 perm/sec)   p_kst 1.037500e-02   p_cons 5.821667e-02   p_joint 6.716667e-03

Joint ci ratio: 1.390424e-01	ci left: 5.654229e-03	ci right 6.506490e-03	k: 789	n:130000
Cons ci ratio: 4.296853e-02	ci left: 5.887492e-02	ci right 6.146782e-02	k: 7821	n:130000
KS ci ratio: 1.062126e-01	ci left: 9.818174e-03	ci right 1.092691e-02	k: 1347	n:130000
LCT   130000 perm   41 sec   (3156 perm/sec)   p_kst 1.036154e-02   p_cons 6.016154e-02   p_joint 6.069231e-03

Joint ci ratio: 1.192104e-01	ci left: 7.207178e-03	ci right 8.127674e-03	k: 1072	n:140000
Cons ci ratio: 4.148600e-02	ci left: 5.870495e-02	ci right 6.119902e-02	k: 8392	n:140000
KS ci ratio: 1.023025e-01	ci left: 9.847328e-03	ci right 1.091595e-02	k: 1452	n:140000
LCT   140000 perm   45 sec   (3120 perm/sec)   p_kst 1.037143e-02   p_cons 5.994286e-02   p_joint 7.657143e-03

Joint ci ratio: 1.162243e-01	ci left: 7.089015e-03	ci right 7.970182e-03	k: 1128	n:150000
Cons ci ratio: 3.997654e-02	ci left: 5.903450e-02	ci right 6.144920e-02	k: 9035	n:150000
KS ci ratio: 9.863490e-02	ci left: 9.905763e-03	ci right 1.093996e-02	k: 1562	n:150000
LCT   150000 perm   49 sec   (3088 perm/sec)   p_kst 1.041333e-02   p_cons 6.023333e-02   p_joint 7.520000e-03

Joint ci ratio: 1.151780e-01	ci left: 6.773339e-03	ci right 7.607168e-03	k: 1149	n:160000
Cons ci ratio: 3.868876e-02	ci left: 5.912608e-02	ci right 6.146488e-02	k: 9646	n:160000
KS ci ratio: 9.585790e-02	ci left: 9.847654e-03	ci right 1.084521e-02	k: 1654	n:160000
LCT   160000 perm   52 sec   (3056 perm/sec)   p_kst 1.033750e-02   p_cons 6.028750e-02   p_joint 7.181250e-03

Joint ci ratio: 9.036940e-02	ci left: 1.045209e-02	ci right 1.144705e-02	k: 1860	n:170000
Cons ci ratio: 3.754519e-02	ci left: 5.912636e-02	ci right 6.139455e-02	k: 10243	n:170000
KS ci ratio: 9.300753e-02	ci left: 9.859957e-03	ci right 1.082744e-02	k: 1757	n:170000
LCT   170000 perm   56 sec   (3025 perm/sec)   p_kst 1.033529e-02   p_cons 6.025294e-02   p_joint 1.094118e-02

Outputting figure to mutsig2_images.part000000000095/LCT.30_5852_170000_0.010335_0.060253_0.010941.png
                gene_name: LCT
               theta_stop: 0.093 
                    nperm: 170000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 5 percent done.
LAMA3
Processing conservation and coverage...
95% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
KS ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
LAMA3   10000 perm   3 sec   (3562 perm/sec)   p_kst 1.659000e-01   p_cons 3.100000e-02   p_joint 3.910000e-02

Joint ci ratio: 1.185896e-01	ci left: 4.872026e-02	ci right 5.491086e-02	k: 1035	n:20000
Cons ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
KS ci ratio: 6.216256e-02	ci left: 1.606697e-01	ci right 1.710277e-01	k: 3316	n:20000
LAMA3   20000 perm   6 sec   (3300 perm/sec)   p_kst 1.658000e-01   p_cons 3.105000e-02   p_joint 5.175000e-02

Joint ci ratio: 1.259737e-01	ci left: 2.929380e-02	ci right 3.326432e-02	k: 937	n:30000
Cons ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
KS ci ratio: 5.099865e-02	ci left: 1.603209e-01	ci right 1.687442e-01	k: 4935	n:30000
LAMA3   30000 perm   9 sec   (3206 perm/sec)   p_kst 1.645000e-01   p_cons 3.133333e-02   p_joint 3.123333e-02

Joint ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
Cons ci ratio: 1.098548e-01	ci left: 2.915279e-02	ci right 3.256576e-02	k: 1233	n:40000
KS ci ratio: 4.428846e-02	ci left: 1.601356e-01	ci right 1.674133e-01	k: 6550	n:40000
LAMA3   40000 perm   13 sec   (3143 perm/sec)   p_kst 1.637500e-01   p_cons 3.082500e-02   p_joint 3.542500e-02

Joint ci ratio: 8.928513e-02	ci left: 3.546023e-02	ci right 3.879378e-02	k: 1855	n:50000
Cons ci ratio: 9.893775e-02	ci left: 2.893197e-02	ci right 3.196287e-02	k: 1521	n:50000
KS ci ratio: 3.951696e-02	ci left: 1.611807e-01	ci right 1.676983e-01	k: 8221	n:50000
LAMA3   50000 perm   16 sec   (3095 perm/sec)   p_kst 1.644200e-01   p_cons 3.042000e-02   p_joint 3.710000e-02

Outputting figure to mutsig2_images.part000000000095/LAMA3.25_10477_50000_0.16442_0.03042_0.0371.png
                gene_name: LAMA3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 6 percent done.
LAMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
LAMB4   10000 perm   2 sec   (4029 perm/sec)   p_kst 4.183000e-01   p_cons 3.140000e-02   p_joint 1.135000e-01

Joint ci ratio: 7.990779e-02	ci left: 1.030921e-01	ci right 1.117224e-01	k: 2147	n:20000
Cons ci ratio: 1.484233e-01	ci left: 3.119383e-02	ci right 3.624291e-02	k: 673	n:20000
KS ci ratio: 3.246017e-02	ci left: 4.147929e-01	ci right 4.285299e-01	k: 8433	n:20000
LAMB4   20000 perm   5 sec   (3768 perm/sec)   p_kst 4.216500e-01   p_cons 3.365000e-02   p_joint 1.073500e-01

Joint ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
Cons ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
KS ci ratio: 2.647999e-02	ci left: 4.165023e-01	ci right 4.277128e-01	k: 12663	n:30000
LAMB4   30000 perm   8 sec   (3652 perm/sec)   p_kst 4.221000e-01   p_cons 3.206667e-02   p_joint 7.393333e-02

Joint ci ratio: 6.700245e-02	ci left: 7.617781e-02	ci right 8.148352e-02	k: 3152	n:40000
Cons ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
KS ci ratio: 2.287755e-02	ci left: 4.184263e-01	ci right 4.281348e-01	k: 16931	n:40000
LAMB4   40000 perm   11 sec   (3583 perm/sec)   p_kst 4.232750e-01   p_cons 3.185000e-02   p_joint 7.880000e-02

Joint ci ratio: 5.614235e-02	ci left: 8.634036e-02	ci right 9.134750e-02	k: 4441	n:50000
Cons ci ratio: 1.002357e-01	ci left: 2.819036e-02	ci right 3.118458e-02	k: 1483	n:50000
KS ci ratio: 2.044552e-02	ci left: 4.193433e-01	ci right 4.280256e-01	k: 21184	n:50000
LAMB4   50000 perm   14 sec   (3515 perm/sec)   p_kst 4.236800e-01   p_cons 2.966000e-02   p_joint 8.882000e-02

Joint ci ratio: 5.084564e-02	ci left: 8.783697e-02	ci right 9.243610e-02	k: 5407	n:60000
Cons ci ratio: 9.079031e-02	ci left: 2.876357e-02	ci right 3.151546e-02	k: 1807	n:60000
KS ci ratio: 1.859104e-02	ci left: 4.216391e-01	ci right 4.295681e-01	k: 25536	n:60000
LAMB4   60000 perm   17 sec   (3465 perm/sec)   p_kst 4.256000e-01   p_cons 3.011667e-02   p_joint 9.011667e-02

Outputting figure to mutsig2_images.part000000000095/LAMB4.23_5418_60000_0.4256_0.030117_0.090117.png
                gene_name: LAMB4
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.092 

Current progress: 8 percent done.
LAMB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
Cons ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
KS ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
LAMB1   10000 perm   2 sec   (4001 perm/sec)   p_kst 5.640000e-01   p_cons 6.276000e-01   p_joint 7.293000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB1.21_5493_10000_0.564_0.6276_0.7293.png
                gene_name: LAMB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 9 percent done.
LAMA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
LAMA4   10000 perm   3 sec   (3911 perm/sec)   p_kst 1.660000e-02   p_cons 1.248000e-01   p_joint 1.050000e-02

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
KS ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
LAMA4   20000 perm   5 sec   (3638 perm/sec)   p_kst 1.570000e-02   p_cons 1.185000e-01   p_joint 1.955000e-02

Joint ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
Cons ci ratio: 6.194420e-02	ci left: 1.141068e-01	ci right 1.214341e-01	k: 3532	n:30000
KS ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
LAMA4   30000 perm   9 sec   (3524 perm/sec)   p_kst 1.560000e-02   p_cons 1.177333e-01   p_joint 2.086667e-02

Joint ci ratio: 1.453853e-01	ci left: 1.655093e-02	ci right 1.916973e-02	k: 713	n:40000
Cons ci ratio: 5.430526e-02	ci left: 1.121115e-01	ci right 1.183945e-01	k: 4609	n:40000
KS ci ratio: 1.567185e-01	ci left: 1.419202e-02	ci right 1.662907e-02	k: 615	n:40000
LAMA4   40000 perm   12 sec   (3449 perm/sec)   p_kst 1.537500e-02   p_cons 1.152250e-01   p_joint 1.782500e-02

Joint ci ratio: 1.404518e-01	ci left: 1.426164e-02	ci right 1.643515e-02	k: 766	n:50000
Cons ci ratio: 4.836609e-02	ci left: 1.133044e-01	ci right 1.189402e-01	k: 5805	n:50000
KS ci ratio: 1.426395e-01	ci left: 1.381771e-02	ci right 1.595915e-02	k: 743	n:50000
LAMA4   50000 perm   15 sec   (3395 perm/sec)   p_kst 1.486000e-02   p_cons 1.161000e-01   p_joint 1.532000e-02

Joint ci ratio: 1.584316e-01	ci left: 9.299348e-03	ci right 1.091523e-02	k: 605	n:60000
Cons ci ratio: 4.406694e-02	ci left: 1.139432e-01	ci right 1.190940e-01	k: 6990	n:60000
KS ci ratio: 1.271939e-01	ci left: 1.459130e-02	ci right 1.658929e-02	k: 934	n:60000
LAMA4   60000 perm   18 sec   (3344 perm/sec)   p_kst 1.556667e-02   p_cons 1.165000e-01   p_joint 1.008333e-02

Joint ci ratio: 1.238277e-01	ci left: 1.323962e-02	ci right 1.500100e-02	k: 987	n:70000
Cons ci ratio: 4.075334e-02	ci left: 1.143587e-01	ci right 1.191303e-01	k: 8171	n:70000
KS ci ratio: 1.178045e-01	ci left: 1.465335e-02	ci right 1.650140e-02	k: 1089	n:70000
LAMA4   70000 perm   21 sec   (3293 perm/sec)   p_kst 1.555714e-02   p_cons 1.167286e-01   p_joint 1.410000e-02

Joint ci ratio: 1.295653e-01	ci left: 1.057907e-02	ci right 1.205669e-02	k: 904	n:80000
Cons ci ratio: 3.807382e-02	ci left: 1.147680e-01	ci right 1.192348e-01	k: 9359	n:80000
KS ci ratio: 1.112770e-01	ci left: 1.442434e-02	ci right 1.613608e-02	k: 1221	n:80000
LAMA4   80000 perm   25 sec   (3254 perm/sec)   p_kst 1.526250e-02   p_cons 1.169875e-01   p_joint 1.130000e-02

Joint ci ratio: 1.066496e-01	ci left: 1.399958e-02	ci right 1.558748e-02	k: 1330	n:90000
Cons ci ratio: 3.595245e-02	ci left: 1.145762e-01	ci right 1.187819e-01	k: 10500	n:90000
KS ci ratio: 1.086128e-01	ci left: 1.349122e-02	ci right 1.505143e-02	k: 1283	n:90000
LAMA4   90000 perm   28 sec   (3219 perm/sec)   p_kst 1.425556e-02   p_cons 1.166667e-01   p_joint 1.477778e-02

Joint ci ratio: 9.736709e-02	ci left: 1.517281e-02	ci right 1.673545e-02	k: 1594	n:100000
Cons ci ratio: 3.397050e-02	ci left: 1.155103e-01	ci right 1.195119e-01	k: 11750	n:100000
KS ci ratio: 1.029173e-01	ci left: 1.356352e-02	ci right 1.504485e-02	k: 1429	n:100000
LAMA4   100000 perm   31 sec   (3182 perm/sec)   p_kst 1.429000e-02   p_cons 1.175000e-01   p_joint 1.594000e-02

Joint ci ratio: 9.481871e-02	ci left: 1.457402e-02	ci right 1.603351e-02	k: 1682	n:110000
Cons ci ratio: 3.241249e-02	ci left: 1.154582e-01	ci right 1.192711e-01	k: 12909	n:110000
KS ci ratio: 9.815948e-02	ci left: 1.358894e-02	ci right 1.500048e-02	k: 1571	n:110000
LAMA4   110000 perm   35 sec   (3154 perm/sec)   p_kst 1.428182e-02   p_cons 1.173545e-01   p_joint 1.529091e-02

Outputting figure to mutsig2_images.part000000000095/LAMA4.15_5792_110000_0.014282_0.11735_0.015291.png
                gene_name: LAMA4
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 11 percent done.
LAMA5
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549620e-02	ci left: 6.936335e-01	ci right 7.116483e-01	k: 7027	n:10000
Cons ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
KS ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
LAMA5   10000 perm   3 sec   (3666 perm/sec)   p_kst 5.686000e-01   p_cons 9.451000e-01   p_joint 7.027000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA5.15_11408_10000_0.5686_0.9451_0.7027.png
                gene_name: LAMA5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 12 percent done.
LAMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
Cons ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
KS ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
LAMC1   10000 perm   2 sec   (4573 perm/sec)   p_kst 1.688000e-01   p_cons 2.036000e-01   p_joint 1.043000e-01

Joint ci ratio: 5.719380e-02	ci left: 1.847318e-01	ci right 1.956584e-01	k: 3803	n:20000
Cons ci ratio: 5.537592e-02	ci left: 1.947721e-01	ci right 2.059151e-01	k: 4006	n:20000
KS ci ratio: 6.220753e-02	ci left: 1.604722e-01	ci right 1.708252e-01	k: 3312	n:20000
LAMC1   20000 perm   5 sec   (4228 perm/sec)   p_kst 1.656000e-01   p_cons 2.003000e-01   p_joint 1.901500e-01

Outputting figure to mutsig2_images.part000000000095/LAMC1.14_4942_20000_0.1656_0.2003_0.19015.png
                gene_name: LAMC1
               theta_stop: 0.062 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 14 percent done.
LAMB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
KS ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
LAMB2   10000 perm   2 sec   (4515 perm/sec)   p_kst 9.765000e-01   p_cons 4.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LAMB2.13_5525_10000_0.9765_0.4843_1.png
                gene_name: LAMB2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
LAMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
LAMC3   10000 perm   2 sec   (4703 perm/sec)   p_kst 2.163000e-01   p_cons 8.605000e-01   p_joint 3.676000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC3.13_4840_10000_0.2163_0.8605_0.3676.png
                gene_name: LAMC3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 17 percent done.
LARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
Cons ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
KS ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
LARP1   10000 perm   2 sec   (5048 perm/sec)   p_kst 5.581000e-01   p_cons 2.090000e-01   p_joint 4.785000e-01

Outputting figure to mutsig2_images.part000000000095/LARP1.10_3136_10000_0.5581_0.209_0.4785.png
                gene_name: LARP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
LAMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
LAMC2   10000 perm   2 sec   (5025 perm/sec)   p_kst 2.023000e-01   p_cons 4.180000e-02   p_joint 8.670000e-02

Joint ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
Cons ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
KS ci ratio: 5.476978e-02	ci left: 1.982851e-01	ci right 2.095011e-01	k: 4077	n:20000
LAMC2   20000 perm   4 sec   (4556 perm/sec)   p_kst 2.038500e-01   p_cons 4.275000e-02   p_joint 1.005500e-01

Joint ci ratio: 8.564803e-02	ci left: 6.246456e-02	ci right 6.808665e-02	k: 1957	n:30000
Cons ci ratio: 1.079092e-01	ci left: 3.985535e-02	ci right 4.443385e-02	k: 1263	n:30000
KS ci ratio: 4.441870e-02	ci left: 2.015016e-01	ci right 2.106887e-01	k: 6182	n:30000
LAMC2   30000 perm   7 sec   (4379 perm/sec)   p_kst 2.060667e-01   p_cons 4.210000e-02   p_joint 6.523333e-02

Joint ci ratio: 8.193495e-02	ci left: 5.190307e-02	ci right 5.636194e-02	k: 2164	n:40000
Cons ci ratio: 9.384066e-02	ci left: 3.983513e-02	ci right 4.378174e-02	k: 1671	n:40000
KS ci ratio: 3.865986e-02	ci left: 2.005068e-01	ci right 2.084361e-01	k: 8178	n:40000
LAMC2   40000 perm   9 sec   (4275 perm/sec)   p_kst 2.044500e-01   p_cons 4.177500e-02   p_joint 5.410000e-02

Outputting figure to mutsig2_images.part000000000095/LAMC2.9_3682_40000_0.20445_0.041775_0.0541.png
                gene_name: LAMC2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 20 percent done.
LATS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
Cons ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
KS ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
LATS1   10000 perm   2 sec   (5314 perm/sec)   p_kst 3.545000e-01   p_cons 2.718000e-01   p_joint 3.485000e-01

Outputting figure to mutsig2_images.part000000000095/LATS1.9_3421_10000_0.3545_0.2718_0.3485.png
                gene_name: LATS1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 22 percent done.
LATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 1.252672e-02	ci left: 9.015493e-01	ci right 9.130121e-01	k: 9074	n:10000
LATS2   10000 perm   2 sec   (5593 perm/sec)   p_kst 9.074000e-01   p_cons 3.600000e-02   p_joint 1.895000e-01

Joint ci ratio: 5.674294e-02	ci left: 1.871548e-01	ci right 1.981347e-01	k: 3852	n:20000
Cons ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
KS ci ratio: 8.208742e-03	ci left: 9.155410e-01	ci right 9.231365e-01	k: 18388	n:20000
LATS2   20000 perm   4 sec   (5077 perm/sec)   p_kst 9.194000e-01   p_cons 3.645000e-02   p_joint 1.926000e-01

Joint ci ratio: 4.812035e-02	ci left: 1.767566e-01	ci right 1.855052e-01	k: 5433	n:30000
Cons ci ratio: 1.178510e-01	ci left: 3.346692e-02	ci right 3.769031e-02	k: 1066	n:30000
KS ci ratio: 6.697424e-03	ci left: 9.163639e-01	ci right 9.225546e-01	k: 27585	n:30000
LATS2   30000 perm   6 sec   (4878 perm/sec)   p_kst 9.195000e-01   p_cons 3.553333e-02   p_joint 1.811000e-01

Joint ci ratio: 4.232170e-02	ci left: 1.728493e-01	ci right 1.803477e-01	k: 7063	n:40000
Cons ci ratio: 1.059735e-01	ci left: 3.131958e-02	ci right 3.484863e-02	k: 1322	n:40000
KS ci ratio: 5.820476e-03	ci left: 9.162579e-01	ci right 9.216311e-01	k: 36759	n:40000
LATS2   40000 perm   8 sec   (4747 perm/sec)   p_kst 9.189750e-01   p_cons 3.305000e-02   p_joint 1.765750e-01

Joint ci ratio: 4.410354e-02	ci left: 1.334226e-01	ci right 1.394596e-01	k: 6821	n:50000
Cons ci ratio: 9.486745e-02	ci left: 3.145137e-02	ci right 3.460315e-02	k: 1650	n:50000
KS ci ratio: 5.167871e-03	ci left: 9.176484e-01	ci right 9.224227e-01	k: 46003	n:50000
LATS2   50000 perm   11 sec   (4644 perm/sec)   p_kst 9.200600e-01   p_cons 3.300000e-02   p_joint 1.364200e-01

Outputting figure to mutsig2_images.part000000000095/LATS2.9_3295_50000_0.92006_0.033_0.13642.png
                gene_name: LATS2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 23 percent done.
LAMB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
Cons ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
KS ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
LAMB3   10000 perm   2 sec   (5373 perm/sec)   p_kst 1.047000e-01   p_cons 8.490000e-01   p_joint 1.936000e-01

Joint ci ratio: 4.813796e-02	ci left: 2.429691e-01	ci right 2.550039e-01	k: 4979	n:20000
Cons ci ratio: 1.145017e-02	ci left: 8.492833e-01	ci right 8.591135e-01	k: 17085	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
LAMB3   20000 perm   4 sec   (4894 perm/sec)   p_kst 1.077500e-01   p_cons 8.542500e-01   p_joint 2.489500e-01

Outputting figure to mutsig2_images.part000000000095/LAMB3.8_3607_20000_0.10775_0.85425_0.24895.png
                gene_name: LAMB3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 25 percent done.
LAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
Cons ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
KS ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
LAX1   10000 perm   2 sec   (6087 perm/sec)   p_kst 1.681000e-01   p_cons 2.336000e-01   p_joint 2.450000e-01

Outputting figure to mutsig2_images.part000000000095/LAX1.8_1262_10000_0.1681_0.2336_0.245.png
                gene_name: LAX1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 26 percent done.
LDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
LDB2   10000 perm   2 sec   (6361 perm/sec)   p_kst 6.590000e-02   p_cons 8.750000e-02   p_joint 2.200000e-02

Joint ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
Cons ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
KS ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
LDB2   20000 perm   4 sec   (5696 perm/sec)   p_kst 6.560000e-02   p_cons 7.030000e-02   p_joint 4.090000e-02

Joint ci ratio: 1.027927e-01	ci left: 4.385197e-02	ci right 4.863640e-02	k: 1386	n:30000
Cons ci ratio: 8.276778e-02	ci left: 6.668016e-02	ci right 7.247020e-02	k: 2086	n:30000
KS ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
LDB2   30000 perm   5 sec   (5481 perm/sec)   p_kst 6.513333e-02   p_cons 6.953333e-02   p_joint 4.620000e-02

Joint ci ratio: 1.010962e-01	ci left: 3.439075e-02	ci right 3.807697e-02	k: 1448	n:40000
Cons ci ratio: 7.210721e-02	ci left: 6.631382e-02	ci right 7.129900e-02	k: 2751	n:40000
KS ci ratio: 7.419897e-02	ci left: 6.279976e-02	ci right 6.766359e-02	k: 2608	n:40000
LDB2   40000 perm   8 sec   (5329 perm/sec)   p_kst 6.520000e-02   p_cons 6.877500e-02   p_joint 3.620000e-02

Joint ci ratio: 7.410274e-02	ci left: 5.103264e-02	ci right 5.497946e-02	k: 2649	n:50000
Cons ci ratio: 6.450486e-02	ci left: 6.655708e-02	ci right 7.101314e-02	k: 3438	n:50000
KS ci ratio: 6.436428e-02	ci left: 6.683289e-02	ci right 7.129730e-02	k: 3452	n:50000
LDB2   50000 perm   10 sec   (5211 perm/sec)   p_kst 6.904000e-02   p_cons 6.876000e-02   p_joint 5.298000e-02

Outputting figure to mutsig2_images.part000000000095/LDB2.8_1263_50000_0.06904_0.06876_0.05298.png
                gene_name: LDB2
               theta_stop: 0.074 
                    nperm: 50000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 28 percent done.
LARP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
KS ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
LARP4B   10000 perm   2 sec   (5629 perm/sec)   p_kst 9.006000e-01   p_cons 7.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARP4B.7_2285_10000_0.9006_0.7413_1.png
                gene_name: LARP4B
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
LARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
KS ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
LARS   10000 perm   2 sec   (5349 perm/sec)   p_kst 8.161000e-01   p_cons 7.810000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARS.7_3659_10000_0.8161_0.781_1.png
                gene_name: LARS
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
LCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
Cons ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
KS ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
LCP1   10000 perm   2 sec   (5973 perm/sec)   p_kst 2.695000e-01   p_cons 4.807000e-01   p_joint 4.322000e-01

Outputting figure to mutsig2_images.part000000000095/LCP1.7_1944_10000_0.2695_0.4807_0.4322.png
                gene_name: LCP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 32 percent done.
LANCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
LANCL2   10000 perm   2 sec   (6120 perm/sec)   p_kst 2.042000e-01   p_cons 1.201000e-01   p_joint 1.664000e-01

Joint ci ratio: 7.060141e-02	ci left: 1.288149e-01	ci right 1.382920e-01	k: 2670	n:20000
Cons ci ratio: 7.783271e-02	ci left: 1.081524e-01	ci right 1.169606e-01	k: 2250	n:20000
KS ci ratio: 5.358372e-02	ci left: 2.054121e-01	ci right 2.167720e-01	k: 4221	n:20000
LANCL2   20000 perm   4 sec   (5543 perm/sec)   p_kst 2.110500e-01   p_cons 1.125000e-01   p_joint 1.335000e-01

Outputting figure to mutsig2_images.part000000000095/LANCL2.6_1389_20000_0.21105_0.1125_0.1335.png
                gene_name: LANCL2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 34 percent done.
LARP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
Cons ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
KS ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
LARP4   10000 perm   2 sec   (5795 perm/sec)   p_kst 2.781000e-01   p_cons 1.910000e-01   p_joint 2.394000e-01

Outputting figure to mutsig2_images.part000000000095/LARP4.6_2243_10000_0.2781_0.191_0.2394.png
                gene_name: LARP4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 35 percent done.
LCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
KS ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
LCP2   10000 perm   2 sec   (5934 perm/sec)   p_kst 3.402000e-01   p_cons 3.420000e-02   p_joint 9.840000e-02

Joint ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
Cons ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
KS ci ratio: 3.878331e-02	ci left: 3.314930e-01	ci right 3.446541e-01	k: 6761	n:20000
LCP2   20000 perm   4 sec   (5352 perm/sec)   p_kst 3.380500e-01   p_cons 3.295000e-02   p_joint 5.465000e-02

Joint ci ratio: 9.999010e-02	ci left: 4.629151e-02	ci right 5.119636e-02	k: 1461	n:30000
Cons ci ratio: 1.191303e-01	ci left: 3.275459e-02	ci right 3.693612e-02	k: 1044	n:30000
KS ci ratio: 3.195393e-02	ci left: 3.286958e-01	ci right 3.394030e-01	k: 10021	n:30000
LCP2   30000 perm   6 sec   (5123 perm/sec)   p_kst 3.340333e-01   p_cons 3.480000e-02   p_joint 4.870000e-02

Joint ci ratio: 8.311865e-02	ci left: 5.048141e-02	ci right 5.488382e-02	k: 2106	n:40000
Cons ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
KS ci ratio: 2.781919e-02	ci left: 3.270859e-01	ci right 3.363386e-01	k: 13268	n:40000
LCP2   40000 perm   8 sec   (4969 perm/sec)   p_kst 3.317000e-01   p_cons 3.490000e-02   p_joint 5.265000e-02

Joint ci ratio: 7.222249e-02	ci left: 5.362697e-02	ci right 5.766481e-02	k: 2781	n:50000
Cons ci ratio: 9.237933e-02	ci left: 3.315197e-02	ci right 3.638234e-02	k: 1737	n:50000
KS ci ratio: 2.479970e-02	ci left: 3.290483e-01	ci right 3.373311e-01	k: 16659	n:50000
LCP2   50000 perm   10 sec   (4856 perm/sec)   p_kst 3.331800e-01   p_cons 3.474000e-02   p_joint 5.562000e-02

Outputting figure to mutsig2_images.part000000000095/LCP2.6_1686_50000_0.33318_0.03474_0.05562.png
                gene_name: LCP2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 37 percent done.
LARP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
Cons ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
KS ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
LARP6   10000 perm   2 sec   (6184 perm/sec)   p_kst 1.864000e-01   p_cons 4.480000e-01   p_joint 2.848000e-01

Outputting figure to mutsig2_images.part000000000095/LARP6.5_1574_10000_0.1864_0.448_0.2848.png
                gene_name: LARP6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
LBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
Cons ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
KS ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
LBP   10000 perm   2 sec   (6420 perm/sec)   p_kst 5.670000e-02   p_cons 4.230000e-01   p_joint 9.500000e-02

Joint ci ratio: 6.490417e-02	ci left: 1.492205e-01	ci right 1.592803e-01	k: 3084	n:20000
Cons ci ratio: 3.230097e-02	ci left: 4.171873e-01	ci right 4.309347e-01	k: 8481	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
LBP   20000 perm   3 sec   (5750 perm/sec)   p_kst 5.985000e-02   p_cons 4.240500e-01   p_joint 1.542000e-01

Joint ci ratio: 6.602811e-02	ci left: 1.016513e-01	ci right 1.086254e-01	k: 3153	n:30000
Cons ci ratio: 2.641496e-02	ci left: 4.177000e-01	ci right 4.289148e-01	k: 12699	n:30000
KS ci ratio: 9.032902e-02	ci left: 5.639247e-02	ci right 6.175999e-02	k: 1771	n:30000
LBP   30000 perm   5 sec   (5499 perm/sec)   p_kst 5.903333e-02   p_cons 4.233000e-01   p_joint 1.051000e-01

Outputting figure to mutsig2_images.part000000000095/LBP.5_1506_30000_0.059033_0.4233_0.1051.png
                gene_name: LBP
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
LCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
Cons ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
LCK   10000 perm   2 sec   (6077 perm/sec)   p_kst 5.388000e-01   p_cons 3.971000e-01   p_joint 7.265000e-01

Outputting figure to mutsig2_images.part000000000095/LCK.5_1578_10000_0.5388_0.3971_0.7265.png
                gene_name: LCK
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 42 percent done.
LAMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
Cons ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
KS ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
LAMP2   10000 perm   2 sec   (6429 perm/sec)   p_kst 1.933000e-01   p_cons 1.510000e-02   p_joint 4.490000e-02

Joint ci ratio: 1.366820e-01	ci left: 3.679429e-02	ci right 4.224062e-02	k: 789	n:20000
Cons ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
KS ci ratio: 5.724026e-02	ci left: 1.844846e-01	ci right 1.954057e-01	k: 3798	n:20000
LAMP2   20000 perm   3 sec   (5825 perm/sec)   p_kst 1.899000e-01   p_cons 1.490000e-02   p_joint 3.945000e-02

Joint ci ratio: 8.720695e-02	ci left: 6.034172e-02	ci right 6.587659e-02	k: 1892	n:30000
Cons ci ratio: 1.729605e-01	ci left: 1.537594e-02	ci right 1.831870e-02	k: 504	n:30000
KS ci ratio: 4.694272e-02	ci left: 1.841540e-01	ci right 1.930398e-01	k: 5657	n:30000
LAMP2   30000 perm   5 sec   (5578 perm/sec)   p_kst 1.885667e-01   p_cons 1.680000e-02   p_joint 6.306667e-02

Joint ci ratio: 8.456905e-02	ci left: 4.881522e-02	ci right 5.315026e-02	k: 2038	n:40000
Cons ci ratio: 1.510873e-01	ci left: 1.529838e-02	ci right 1.782251e-02	k: 661	n:40000
KS ci ratio: 4.053452e-02	ci left: 1.856447e-01	ci right 1.933504e-01	k: 7579	n:40000
LAMP2   40000 perm   7 sec   (5408 perm/sec)   p_kst 1.894750e-01   p_cons 1.652500e-02   p_joint 5.095000e-02

Joint ci ratio: 9.338601e-02	ci left: 3.244814e-02	ci right 3.564626e-02	k: 1701	n:50000
Cons ci ratio: 1.343548e-01	ci left: 1.561424e-02	ci right 1.788236e-02	k: 836	n:50000
KS ci ratio: 3.634518e-02	ci left: 1.852984e-01	ci right 1.921777e-01	k: 9436	n:50000
LAMP2   50000 perm   9 sec   (5267 perm/sec)   p_kst 1.887200e-01   p_cons 1.672000e-02   p_joint 3.402000e-02

Joint ci ratio: 8.185389e-02	ci left: 3.530766e-02	ci right 3.833736e-02	k: 2208	n:60000
Cons ci ratio: 1.234893e-01	ci left: 1.549580e-02	ci right 1.755134e-02	k: 990	n:60000
KS ci ratio: 3.316657e-02	ci left: 1.857085e-01	ci right 1.919883e-01	k: 11330	n:60000
LAMP2   60000 perm   12 sec   (5149 perm/sec)   p_kst 1.888333e-01   p_cons 1.650000e-02   p_joint 3.680000e-02

Joint ci ratio: 8.131998e-02	ci left: 3.082051e-02	ci right 3.344703e-02	k: 2248	n:70000
Cons ci ratio: 1.146402e-01	ci left: 1.548595e-02	ci right 1.738301e-02	k: 1149	n:70000
KS ci ratio: 3.068412e-02	ci left: 1.861623e-01	ci right 1.919778e-01	k: 13234	n:70000
LAMP2   70000 perm   14 sec   (5042 perm/sec)   p_kst 1.890571e-01   p_cons 1.641429e-02   p_joint 3.211429e-02

Joint ci ratio: 7.710118e-02	ci left: 3.009189e-02	ci right 3.251726e-02	k: 2503	n:80000
Cons ci ratio: 1.067126e-01	ci left: 1.570160e-02	ci right 1.748370e-02	k: 1326	n:80000
KS ci ratio: 2.865301e-02	ci left: 1.868763e-01	ci right 1.923212e-01	k: 15167	n:80000
LAMP2   80000 perm   16 sec   (4947 perm/sec)   p_kst 1.895875e-01   p_cons 1.657500e-02   p_joint 3.128750e-02

Joint ci ratio: 7.032942e-02	ci left: 3.219193e-02	ci right 3.454938e-02	k: 3002	n:90000
Cons ci ratio: 1.007427e-01	ci left: 1.571031e-02	ci right 1.738773e-02	k: 1488	n:90000
KS ci ratio: 2.704072e-02	ci left: 1.867341e-01	ci right 1.918637e-01	k: 17036	n:90000
LAMP2   90000 perm   19 sec   (4857 perm/sec)   p_kst 1.892889e-01   p_cons 1.653333e-02   p_joint 3.335556e-02

Joint ci ratio: 6.431323e-02	ci left: 3.466680e-02	ci right 3.698022e-02	k: 3581	n:100000
Cons ci ratio: 1.043707e-01	ci left: 1.318349e-02	ci right 1.464490e-02	k: 1390	n:100000
KS ci ratio: 2.568657e-02	ci left: 1.864680e-01	ci right 1.913300e-01	k: 18889	n:100000
LAMP2   100000 perm   21 sec   (4773 perm/sec)   p_kst 1.888900e-01   p_cons 1.390000e-02   p_joint 3.581000e-02

Joint ci ratio: 5.482618e-02	ci left: 4.319023e-02	ci right 4.563387e-02	k: 4884	n:110000
Cons ci ratio: 9.978180e-02	ci left: 1.314549e-02	ci right 1.453486e-02	k: 1521	n:110000
KS ci ratio: 2.459705e-02	ci left: 1.852695e-01	ci right 1.898924e-01	k: 20633	n:110000
LAMP2   110000 perm   23 sec   (4694 perm/sec)   p_kst 1.875727e-01   p_cons 1.382727e-02   p_joint 4.440000e-02

Outputting figure to mutsig2_images.part000000000095/LAMP2.4_1560_110000_0.18757_0.013827_0.0444.png
                gene_name: LAMP2
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 43 percent done.
LAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
KS ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
LAMP3   10000 perm   2 sec   (6343 perm/sec)   p_kst 5.251000e-01   p_cons 1.744000e-01   p_joint 2.812000e-01

Outputting figure to mutsig2_images.part000000000095/LAMP3.4_1275_10000_0.5251_0.1744_0.2812.png
                gene_name: LAMP3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 45 percent done.
LARGE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
Cons ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
KS ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
LARGE   10000 perm   2 sec   (6226 perm/sec)   p_kst 5.488000e-01   p_cons 3.885000e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000095/LARGE.4_2327_10000_0.5488_0.3885_0.5517.png
                gene_name: LARGE
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 46 percent done.
LARP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
LARP1B   10000 perm   2 sec   (5909 perm/sec)   p_kst 7.259000e-01   p_cons 2.941000e-01   p_joint 4.596000e-01

Outputting figure to mutsig2_images.part000000000095/LARP1B.4_2951_10000_0.7259_0.2941_0.4596.png
                gene_name: LARP1B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 48 percent done.
LASS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
LASS6   10000 perm   2 sec   (6412 perm/sec)   p_kst 7.551000e-01   p_cons 1.504000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000095/LASS6.4_1195_10000_0.7551_0.1504_0.3663.png
                gene_name: LASS6
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 49 percent done.
LBXCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437065e-02	ci left: 5.555163e-01	ci right 5.750457e-01	k: 5653	n:10000
Cons ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KS ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
LBXCOR1   10000 perm   2 sec   (5781 perm/sec)   p_kst 7.093000e-01   p_cons 2.450000e-01   p_joint 5.653000e-01

Outputting figure to mutsig2_images.part000000000095/LBXCOR1.4_2806_10000_0.7093_0.245_0.5653.png
                gene_name: LBXCOR1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 51 percent done.
LCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
Cons ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
KS ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
LCA5   10000 perm   2 sec   (6239 perm/sec)   p_kst 8.450000e-01   p_cons 3.650000e-01   p_joint 8.084000e-01

Outputting figure to mutsig2_images.part000000000095/LCA5.4_2122_10000_0.845_0.365_0.8084.png
                gene_name: LCA5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 52 percent done.
LCE1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
Cons ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
LCE1E   10000 perm   1 sec   (7493 perm/sec)   p_kst 4.998000e-01   p_cons 2.472000e-01   p_joint 6.160000e-01

Outputting figure to mutsig2_images.part000000000095/LCE1E.4_361_10000_0.4998_0.2472_0.616.png
                gene_name: LCE1E
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 54 percent done.
LCE1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
LCE1F   10000 perm   1 sec   (7591 perm/sec)   p_kst 1.060000e-01   p_cons 1.170000e-02   p_joint 6.800000e-03

Joint ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
Cons ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
LCE1F   20000 perm   3 sec   (6723 perm/sec)   p_kst 1.024500e-01   p_cons 6.350000e-03   p_joint 2.800000e-03

Joint ci ratio: 2.415802e-01	ci left: 7.648923e-03	ci right 9.781191e-03	k: 260	n:30000
Cons ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
KS ci ratio: 6.711521e-02	ci left: 9.866293e-02	ci right 1.055477e-01	k: 3062	n:30000
LCE1F   30000 perm   5 sec   (6397 perm/sec)   p_kst 1.020667e-01   p_cons 6.533333e-03   p_joint 8.666667e-03

Joint ci ratio: 2.196418e-01	ci left: 7.032159e-03	ci right 8.790409e-03	k: 315	n:40000
Cons ci ratio: 2.466476e-01	ci left: 5.501199e-03	ci right 7.071772e-03	k: 250	n:40000
KS ci ratio: 5.852346e-02	ci left: 9.789086e-02	ci right 1.038172e-01	k: 4033	n:40000
LCE1F   40000 perm   6 sec   (6174 perm/sec)   p_kst 1.008250e-01   p_cons 6.250000e-03   p_joint 7.875000e-03

Joint ci ratio: 2.545648e-01	ci left: 4.119406e-03	ci right 5.339191e-03	k: 235	n:50000
Cons ci ratio: 2.191204e-01	ci left: 5.663077e-03	ci right 7.075155e-03	k: 317	n:50000
KS ci ratio: 5.244635e-02	ci left: 9.785808e-02	ci right 1.031484e-01	k: 5024	n:50000
LCE1F   50000 perm   8 sec   (6006 perm/sec)   p_kst 1.004800e-01   p_cons 6.340000e-03   p_joint 4.700000e-03

Joint ci ratio: 1.529187e-01	ci left: 1.000439e-02	ci right 1.167676e-02	k: 649	n:60000
Cons ci ratio: 1.993989e-01	ci left: 5.761726e-03	ci right 7.053383e-03	k: 383	n:60000
KS ci ratio: 4.842325e-02	ci left: 9.607730e-02	ci right 1.008616e-01	k: 5907	n:60000
LCE1F   60000 perm   10 sec   (5861 perm/sec)   p_kst 9.845000e-02   p_cons 6.383333e-03   p_joint 1.081667e-02

Joint ci ratio: 1.504886e-01	ci left: 8.877152e-03	ci right 1.033536e-02	k: 671	n:70000
Cons ci ratio: 1.839887e-01	ci left: 5.849915e-03	ci right 7.048692e-03	k: 450	n:70000
KS ci ratio: 4.467207e-02	ci left: 9.688189e-02	ci right 1.013228e-01	k: 6936	n:70000
LCE1F   70000 perm   12 sec   (5726 perm/sec)   p_kst 9.908571e-02   p_cons 6.428571e-03   p_joint 9.585714e-03

Joint ci ratio: 1.494624e-01	ci left: 7.887511e-03	ci right 9.173512e-03	k: 681	n:80000
Cons ci ratio: 1.710120e-01	ci left: 5.966817e-03	ci right 7.094418e-03	k: 521	n:80000
KS ci ratio: 4.186904e-02	ci left: 9.667869e-02	ci right 1.008255e-01	k: 7899	n:80000
LCE1F   80000 perm   14 sec   (5600 perm/sec)   p_kst 9.873750e-02   p_cons 6.512500e-03   p_joint 8.512500e-03

Joint ci ratio: 1.247287e-01	ci left: 1.017804e-02	ci right 1.154265e-02	k: 976	n:90000
Cons ci ratio: 1.603070e-01	ci left: 6.070722e-03	ci right 7.139230e-03	k: 593	n:90000
KS ci ratio: 3.936528e-02	ci left: 9.728745e-02	ci right 1.012051e-01	k: 8931	n:90000
LCE1F   90000 perm   16 sec   (5480 perm/sec)   p_kst 9.923333e-02   p_cons 6.588889e-03   p_joint 1.084444e-02

Joint ci ratio: 1.135860e-01	ci left: 1.110103e-02	ci right 1.244752e-02	k: 1176	n:100000
Cons ci ratio: 1.537306e-01	ci left: 5.963197e-03	ci right 6.965752e-03	k: 645	n:100000
KS ci ratio: 3.633622e-02	ci left: 1.023526e-01	ci right 1.061504e-01	k: 10424	n:100000
LCE1F   100000 perm   19 sec   (5374 perm/sec)   p_kst 1.042400e-01   p_cons 6.450000e-03   p_joint 1.176000e-02

Joint ci ratio: 9.643155e-02	ci left: 1.408581e-02	ci right 1.552176e-02	k: 1627	n:110000
Cons ci ratio: 1.449029e-01	ci left: 6.129996e-03	ci right 7.096294e-03	k: 726	n:110000
KS ci ratio: 3.459895e-02	ci left: 1.026891e-01	ci right 1.063136e-01	k: 11494	n:110000
LCE1F   110000 perm   21 sec   (5263 perm/sec)   p_kst 1.044909e-01   p_cons 6.600000e-03   p_joint 1.479091e-02

Joint ci ratio: 9.934548e-02	ci left: 1.217162e-02	ci right 1.345209e-02	k: 1536	n:120000
Cons ci ratio: 1.379561e-01	ci left: 6.222076e-03	ci right 7.152005e-03	k: 801	n:120000
KS ci ratio: 3.310093e-02	ci left: 1.029070e-01	ci right 1.063788e-01	k: 12556	n:120000
LCE1F   120000 perm   23 sec   (5162 perm/sec)   p_kst 1.046333e-01   p_cons 6.675000e-03   p_joint 1.280000e-02

Joint ci ratio: 9.795407e-02	ci left: 1.157277e-02	ci right 1.277221e-02	k: 1581	n:130000
Cons ci ratio: 1.333056e-01	ci left: 6.167028e-03	ci right 7.055195e-03	k: 858	n:130000
KS ci ratio: 3.176379e-02	ci left: 1.032011e-01	ci right 1.065396e-01	k: 13632	n:130000
LCE1F   130000 perm   26 sec   (5069 perm/sec)   p_kst 1.048615e-01   p_cons 6.600000e-03   p_joint 1.216154e-02

Joint ci ratio: 9.976623e-02	ci left: 1.036268e-02	ci right 1.145772e-02	k: 1526	n:140000
Cons ci ratio: 1.295950e-01	ci left: 6.071905e-03	ci right 6.920157e-03	k: 908	n:140000
KS ci ratio: 3.067456e-02	ci left: 1.028596e-01	ci right 1.060710e-01	k: 14624	n:140000
LCE1F   140000 perm   28 sec   (4979 perm/sec)   p_kst 1.044571e-01   p_cons 6.485714e-03   p_joint 1.090000e-02

Joint ci ratio: 9.049983e-02	ci left: 1.179394e-02	ci right 1.291836e-02	k: 1852	n:150000
Cons ci ratio: 1.251960e-01	ci left: 6.086640e-03	ci right 6.905945e-03	k: 973	n:150000
KS ci ratio: 2.964358e-02	ci left: 1.028569e-01	ci right 1.059584e-01	k: 15660	n:150000
LCE1F   150000 perm   31 sec   (4890 perm/sec)   p_kst 1.044000e-01   p_cons 6.486667e-03   p_joint 1.234667e-02

Joint ci ratio: 9.215903e-02	ci left: 1.066567e-02	ci right 1.170216e-02	k: 1788	n:160000
Cons ci ratio: 1.219274e-01	ci left: 6.027225e-03	ci right 6.815821e-03	k: 1026	n:160000
KS ci ratio: 2.867839e-02	ci left: 1.030610e-01	ci right 1.060658e-01	k: 16729	n:160000
LCE1F   160000 perm   33 sec   (4804 perm/sec)   p_kst 1.045563e-01   p_cons 6.412500e-03   p_joint 1.117500e-02

Joint ci ratio: 9.250375e-02	ci left: 9.969154e-03	ci right 1.094177e-02	k: 1776	n:170000
Cons ci ratio: 1.187913e-01	ci left: 5.986464e-03	ci right 6.748165e-03	k: 1081	n:170000
KS ci ratio: 2.781131e-02	ci left: 1.031783e-01	ci right 1.060941e-01	k: 17787	n:170000
LCE1F   170000 perm   36 sec   (4718 perm/sec)   p_kst 1.046294e-01   p_cons 6.358824e-03   p_joint 1.044706e-02

Joint ci ratio: 9.177752e-02	ci left: 9.572621e-03	ci right 1.049882e-02	k: 1805	n:180000
Cons ci ratio: 1.157318e-01	ci left: 5.966650e-03	ci right 6.704940e-03	k: 1139	n:180000
KS ci ratio: 2.699442e-02	ci left: 1.034494e-01	ci right 1.062856e-01	k: 18875	n:180000
LCE1F   180000 perm   39 sec   (4642 perm/sec)   p_kst 1.048611e-01   p_cons 6.327778e-03   p_joint 1.002778e-02

Joint ci ratio: 8.952756e-02	ci left: 9.542024e-03	ci right 1.044144e-02	k: 1897	n:190000
Cons ci ratio: 1.128024e-01	ci left: 5.959379e-03	ci right 6.676862e-03	k: 1199	n:190000
KS ci ratio: 2.627862e-02	ci left: 1.034576e-01	ci right 1.062177e-01	k: 19918	n:190000
LCE1F   190000 perm   42 sec   (4563 perm/sec)   p_kst 1.048316e-01   p_cons 6.310526e-03   p_joint 9.984211e-03

Joint ci ratio: 8.739100e-02	ci left: 9.524522e-03	ci right 1.039977e-02	k: 1991	n:200000
Cons ci ratio: 1.097348e-01	ci left: 5.991953e-03	ci right 6.692471e-03	k: 1267	n:200000
KS ci ratio: 2.562646e-02	ci left: 1.033962e-01	ci right 1.060852e-01	k: 20947	n:200000
LCE1F   200000 perm   45 sec   (4489 perm/sec)   p_kst 1.047350e-01   p_cons 6.335000e-03   p_joint 9.955000e-03

Joint ci ratio: 8.509197e-02	ci left: 9.578838e-03	ci right 1.043477e-02	k: 2100	n:210000
Cons ci ratio: 1.073094e-01	ci left: 5.975313e-03	ci right 6.657470e-03	k: 1325	n:210000
KS ci ratio: 2.497489e-02	ci left: 1.036825e-01	ci right 1.063094e-01	k: 22048	n:210000
LCE1F   210000 perm   48 sec   (4418 perm/sec)   p_kst 1.049905e-01   p_cons 6.309524e-03   p_joint 1.000000e-02

Joint ci ratio: 8.048215e-02	ci left: 1.023862e-02	ci right 1.110162e-02	k: 2346	n:220000
Cons ci ratio: 1.045828e-01	ci left: 6.013465e-03	ci right 6.681460e-03	k: 1395	n:220000
KS ci ratio: 2.439003e-02	ci left: 1.037943e-01	ci right 1.063616e-01	k: 23116	n:220000
LCE1F   220000 perm   51 sec   (4353 perm/sec)   p_kst 1.050727e-01   p_cons 6.340909e-03   p_joint 1.066364e-02

Joint ci ratio: 7.849805e-02	ci left: 1.030484e-02	ci right 1.115103e-02	k: 2466	n:230000
Cons ci ratio: 1.021943e-01	ci left: 6.031549e-03	ci right 6.685333e-03	k: 1461	n:230000
KS ci ratio: 2.384884e-02	ci left: 1.038624e-01	ci right 1.063736e-01	k: 24176	n:230000
LCE1F   230000 perm   54 sec   (4286 perm/sec)   p_kst 1.051130e-01   p_cons 6.352174e-03   p_joint 1.072174e-02

Joint ci ratio: 7.792746e-02	ci left: 1.002657e-02	ci right 1.084365e-02	k: 2503	n:240000
Cons ci ratio: 1.001605e-01	ci left: 6.023907e-03	ci right 6.663103e-03	k: 1521	n:240000
KS ci ratio: 2.334886e-02	ci left: 1.038716e-01	ci right 1.063296e-01	k: 25223	n:240000
LCE1F   240000 perm   57 sec   (4224 perm/sec)   p_kst 1.050958e-01   p_cons 6.337500e-03   p_joint 1.042917e-02

Joint ci ratio: 7.508805e-02	ci left: 1.037889e-02	ci right 1.119252e-02	k: 2695	n:250000
Cons ci ratio: 9.849436e-02	ci left: 5.985777e-03	ci right 6.609752e-03	k: 1573	n:250000
KS ci ratio: 2.288880e-02	ci left: 1.038009e-01	ci right 1.062082e-01	k: 26250	n:250000
LCE1F   250000 perm   60 sec   (4164 perm/sec)   p_kst 1.050000e-01   p_cons 6.292000e-03   p_joint 1.078000e-02

Outputting figure to mutsig2_images.part000000000095/LCE1F.4_360_250000_0.105_0.006292_0.01078.png
                gene_name: LCE1F
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 55 percent done.
LCE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906018e-02	ci left: 6.358318e-01	ci right 6.546835e-01	k: 6453	n:10000
Cons ci ratio: 4.127109e-02	ci left: 4.643719e-01	ci right 4.840431e-01	k: 4742	n:10000
KS ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
LCE2A   10000 perm   1 sec   (7467 perm/sec)   p_kst 3.625000e-01   p_cons 4.742000e-01   p_joint 6.453000e-01

Outputting figure to mutsig2_images.part000000000095/LCE2A.4_325_10000_0.3625_0.4742_0.6453.png
                gene_name: LCE2A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 57 percent done.
LCE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
Cons ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
LCE2B   10000 perm   1 sec   (6777 perm/sec)   p_kst 1.064000e-01   p_cons 5.390000e-01   p_joint 1.519000e-01

Joint ci ratio: 7.483080e-02	ci left: 1.161170e-01	ci right 1.251936e-01	k: 2412	n:20000
Cons ci ratio: 2.589970e-02	ci left: 5.269069e-01	ci right 5.407833e-01	k: 10677	n:20000
KS ci ratio: 8.051804e-02	ci left: 1.016679e-01	ci right 1.102470e-01	k: 2118	n:20000
LCE2B   20000 perm   3 sec   (6090 perm/sec)   p_kst 1.059000e-01   p_cons 5.338500e-01   p_joint 1.206000e-01

Outputting figure to mutsig2_images.part000000000095/LCE2B.4_337_20000_0.1059_0.53385_0.1206.png
                gene_name: LCE2B
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 58 percent done.
LCE3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
KS ci ratio: 2.147262e-02	ci left: 7.608141e-01	ci right 7.774289e-01	k: 7692	n:10000
LCE3E   10000 perm   1 sec   (7559 perm/sec)   p_kst 7.692000e-01   p_cons 6.963000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCE3E.4_283_10000_0.7692_0.6963_1.png
                gene_name: LCE3E
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
LCLAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
KS ci ratio: 2.360353e-02	ci left: 7.251213e-01	ci right 7.425423e-01	k: 7339	n:10000
LCLAT1   10000 perm   1 sec   (6667 perm/sec)   p_kst 7.339000e-01   p_cons 7.701000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCLAT1.4_1269_10000_0.7339_0.7701_1.png
                gene_name: LCLAT1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
LCMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
LCMT2   10000 perm   2 sec   (6631 perm/sec)   p_kst 8.185000e-01   p_cons 7.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCMT2.4_2065_10000_0.8185_0.7786_1.png
                gene_name: LCMT2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
LDB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
Cons ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
KS ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
LDB3   10000 perm   2 sec   (5870 perm/sec)   p_kst 5.508000e-01   p_cons 2.184000e-01   p_joint 3.512000e-01

Outputting figure to mutsig2_images.part000000000095/LDB3.4_2572_10000_0.5508_0.2184_0.3512.png
                gene_name: LDB3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 65 percent done.
LANCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 3.346348e-02	ci left: 5.686497e-01	ci right 5.881046e-01	k: 5784	n:10000
KS ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
LANCL3   10000 perm   1 sec   (6770 perm/sec)   p_kst 6.030000e-02   p_cons 5.784000e-01   p_joint 7.050000e-02

Joint ci ratio: 7.101623e-02	ci left: 1.274853e-01	ci right 1.369219e-01	k: 2643	n:20000
Cons ci ratio: 2.359579e-02	ci left: 5.729231e-01	ci right 5.866537e-01	k: 11596	n:20000
KS ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
LANCL3   20000 perm   3 sec   (5997 perm/sec)   p_kst 6.000000e-02   p_cons 5.798000e-01   p_joint 1.321500e-01

Joint ci ratio: 6.020902e-02	ci left: 1.200601e-01	ci right 1.275463e-01	k: 3713	n:30000
Cons ci ratio: 1.918467e-02	ci left: 5.762607e-01	ci right 5.874568e-01	k: 17456	n:30000
KS ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
LANCL3   30000 perm   5 sec   (5732 perm/sec)   p_kst 6.010000e-02   p_cons 5.818667e-01   p_joint 1.237667e-01

Outputting figure to mutsig2_images.part000000000095/LANCL3.3_1351_30000_0.0601_0.58187_0.12377.png
                gene_name: LANCL3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 66 percent done.
LASS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
Cons ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
KS ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
LASS2   10000 perm   1 sec   (6694 perm/sec)   p_kst 5.309000e-01   p_cons 8.726000e-01   p_joint 8.691000e-01

Outputting figure to mutsig2_images.part000000000095/LASS2.3_1183_10000_0.5309_0.8726_0.8691.png
                gene_name: LASS2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 68 percent done.
LAT
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
LAT   10000 perm   1 sec   (7452 perm/sec)   p_kst 9.094000e-01   p_cons 3.525000e-01   p_joint 4.220000e-01

Outputting figure to mutsig2_images.part000000000095/LAT.2_941_10000_0.9094_0.3525_0.422.png
                gene_name: LAT
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 69 percent done.
LBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
LBX1   10000 perm   1 sec   (6992 perm/sec)   p_kst 1.190000e-01   p_cons 1.219000e-01   p_joint 1.539000e-01

Joint ci ratio: 8.622963e-02	ci left: 8.959754e-02	ci right 9.772104e-02	k: 1872	n:20000
Cons ci ratio: 7.565317e-02	ci left: 1.138548e-01	ci right 1.228565e-01	k: 2366	n:20000
KS ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
LBX1   20000 perm   3 sec   (6194 perm/sec)   p_kst 1.177000e-01   p_cons 1.183000e-01   p_joint 9.360000e-02

Outputting figure to mutsig2_images.part000000000095/LBX1.3_854_20000_0.1177_0.1183_0.0936.png
                gene_name: LBX1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 71 percent done.
LCE5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.431370e-02	ci left: 8.759247e-01	ci right 8.886517e-01	k: 8824	n:10000
KS ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
LCE5A   10000 perm   1 sec   (7570 perm/sec)   p_kst 4.411000e-01   p_cons 8.824000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCE5A.3_361_10000_0.4411_0.8824_1.png
                gene_name: LCE5A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
LCTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
LCTL   10000 perm   2 sec   (6436 perm/sec)   p_kst 4.380000e-01   p_cons 2.120000e-02   p_joint 1.955000e-01

Joint ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
Cons ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
KS ci ratio: 3.124269e-02	ci left: 4.335040e-01	ci right 4.473134e-01	k: 8808	n:20000
LCTL   20000 perm   3 sec   (5838 perm/sec)   p_kst 4.404000e-01   p_cons 1.705000e-02   p_joint 1.288500e-01

Joint ci ratio: 5.646049e-02	ci left: 1.345109e-01	ci right 1.423593e-01	k: 4152	n:30000
Cons ci ratio: 1.720960e-01	ci left: 1.553552e-02	ci right 1.849242e-02	k: 509	n:30000
KS ci ratio: 2.546549e-02	ci left: 4.356372e-01	ci right 4.469076e-01	k: 13238	n:30000
LCTL   30000 perm   5 sec   (5562 perm/sec)   p_kst 4.412667e-01   p_cons 1.696667e-02   p_joint 1.384000e-01

Joint ci ratio: 4.681310e-02	ci left: 1.456472e-01	ci right 1.526538e-01	k: 5965	n:40000
Cons ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
KS ci ratio: 2.205259e-02	ci left: 4.364259e-01	ci right 4.461826e-01	k: 17652	n:40000
LCTL   40000 perm   7 sec   (5398 perm/sec)   p_kst 4.413000e-01   p_cons 1.645000e-02   p_joint 1.491250e-01

Joint ci ratio: 3.933105e-02	ci left: 1.624703e-01	ci right 1.690085e-01	k: 8286	n:50000
Cons ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
KS ci ratio: 1.971981e-02	ci left: 4.370611e-01	ci right 4.457857e-01	k: 22071	n:50000
LCTL   50000 perm   9 sec   (5269 perm/sec)   p_kst 4.414200e-01   p_cons 1.604000e-02   p_joint 1.657200e-01

Joint ci ratio: 3.195661e-02	ci left: 1.972860e-01	ci right 2.037096e-01	k: 12029	n:60000
Cons ci ratio: 1.259007e-01	ci left: 1.489808e-02	ci right 1.691580e-02	k: 953	n:60000
KS ci ratio: 1.802196e-02	ci left: 4.368886e-01	ci right 4.448505e-01	k: 26452	n:60000
LCTL   60000 perm   12 sec   (5156 perm/sec)   p_kst 4.408667e-01   p_cons 1.588333e-02   p_joint 2.004833e-01

Joint ci ratio: 3.313786e-02	ci left: 1.638322e-01	ci right 1.693669e-01	k: 11661	n:70000
Cons ci ratio: 1.173135e-01	ci left: 1.477820e-02	ci right 1.663369e-02	k: 1098	n:70000
KS ci ratio: 1.672034e-02	ci left: 4.361469e-01	ci right 4.435152e-01	k: 30788	n:70000
LCTL   70000 perm   14 sec   (5057 perm/sec)   p_kst 4.398286e-01   p_cons 1.568571e-02   p_joint 1.665857e-01

Joint ci ratio: 3.248516e-02	ci left: 1.514803e-01	ci right 1.564948e-01	k: 12318	n:80000
Cons ci ratio: 1.105443e-01	ci left: 1.461887e-02	ci right 1.634153e-02	k: 1237	n:80000
KS ci ratio: 1.562593e-02	ci left: 4.368435e-01	ci right 4.437358e-01	k: 35223	n:80000
LCTL   80000 perm   16 sec   (4958 perm/sec)   p_kst 4.402875e-01   p_cons 1.546250e-02   p_joint 1.539750e-01

Joint ci ratio: 2.665635e-02	ci left: 1.911446e-01	ci right 1.963196e-01	k: 17435	n:90000
Cons ci ratio: 1.041748e-01	ci left: 1.468139e-02	ci right 1.630562e-02	k: 1393	n:90000
KS ci ratio: 1.479754e-02	ci left: 4.348661e-01	ci right 4.413601e-01	k: 39430	n:90000
LCTL   90000 perm   18 sec   (4867 perm/sec)   p_kst 4.381111e-01   p_cons 1.547778e-02   p_joint 1.937222e-01

Joint ci ratio: 2.332953e-02	ci left: 2.175950e-01	ci right 2.227412e-01	k: 22016	n:100000
Cons ci ratio: 9.934780e-02	ci left: 1.456784e-02	ci right 1.610046e-02	k: 1532	n:100000
KS ci ratio: 1.404251e-02	ci left: 4.348818e-01	ci right 4.410418e-01	k: 43796	n:100000
LCTL   100000 perm   21 sec   (4784 perm/sec)   p_kst 4.379600e-01   p_cons 1.532000e-02   p_joint 2.201600e-01

Outputting figure to mutsig2_images.part000000000095/LCTL.3_1756_100000_0.43796_0.01532_0.22016.png
                gene_name: LCTL
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 74 percent done.
LAMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
Cons ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
LAMP1   10000 perm   1 sec   (7280 perm/sec)   p_kst 1.670000e-02   p_cons 3.784000e-01   p_joint 1.620000e-02

Joint ci ratio: 5.558416e-02	ci left: 1.935848e-01	ci right 2.047028e-01	k: 3982	n:20000
Cons ci ratio: 3.679837e-02	ci left: 3.552853e-01	ci right 3.686548e-01	k: 7239	n:20000
KS ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
LAMP1   20000 perm   3 sec   (6463 perm/sec)   p_kst 1.725000e-02   p_cons 3.619500e-01   p_joint 1.991000e-01

Joint ci ratio: 4.833229e-02	ci left: 1.754690e-01	ci right 1.841931e-01	k: 5394	n:30000
Cons ci ratio: 2.920767e-02	ci left: 3.696503e-01	ci right 3.806405e-01	k: 11254	n:30000
KS ci ratio: 1.717537e-01	ci left: 1.559936e-02	ci right 1.856189e-02	k: 511	n:30000
LAMP1   30000 perm   5 sec   (6146 perm/sec)   p_kst 1.703333e-02   p_cons 3.751333e-01   p_joint 1.798000e-01

Joint ci ratio: 3.953360e-02	ci left: 1.933848e-01	ci right 2.012092e-01	k: 7891	n:40000
Cons ci ratio: 2.537116e-02	ci left: 3.689807e-01	ci right 3.784876e-01	k: 14949	n:40000
KS ci ratio: 1.491517e-01	ci left: 1.570766e-02	ci right 1.826316e-02	k: 678	n:40000
LAMP1   40000 perm   7 sec   (5918 perm/sec)   p_kst 1.695000e-02   p_cons 3.737250e-01   p_joint 1.972750e-01

Joint ci ratio: 3.064521e-02	ci left: 2.427670e-01	ci right 2.503424e-01	k: 12327	n:50000
Cons ci ratio: 2.271836e-02	ci left: 3.689581e-01	ci right 3.774566e-01	k: 18660	n:50000
KS ci ratio: 1.313543e-01	ci left: 1.634938e-02	ci right 1.866712e-02	k: 874	n:50000
LAMP1   50000 perm   9 sec   (5741 perm/sec)   p_kst 1.748000e-02   p_cons 3.732000e-01   p_joint 2.465400e-01

Joint ci ratio: 2.420319e-02	ci left: 3.005034e-01	ci right 3.078823e-01	k: 18251	n:60000
Cons ci ratio: 2.077903e-02	ci left: 3.684298e-01	ci right 3.761825e-01	k: 22338	n:60000
KS ci ratio: 1.197936e-01	ci left: 1.648203e-02	ci right 1.859834e-02	k: 1051	n:60000
LAMP1   60000 perm   11 sec   (5600 perm/sec)   p_kst 1.751667e-02   p_cons 3.723000e-01   p_joint 3.041833e-01

Joint ci ratio: 2.118255e-02	ci left: 3.250207e-01	ci right 3.319935e-01	k: 22995	n:70000
Cons ci ratio: 1.922950e-02	ci left: 3.689167e-01	ci right 3.760939e-01	k: 26075	n:70000
KS ci ratio: 1.099240e-01	ci left: 1.686117e-02	ci right 1.883623e-02	k: 1248	n:70000
LAMP1   70000 perm   13 sec   (5467 perm/sec)   p_kst 1.782857e-02   p_cons 3.725000e-01   p_joint 3.285000e-01

Joint ci ratio: 1.931284e-02	ci left: 3.366297e-01	ci right 3.432069e-01	k: 27193	n:80000
Cons ci ratio: 1.798858e-02	ci left: 3.691233e-01	ci right 3.758360e-01	k: 29798	n:80000
KS ci ratio: 1.024753e-01	ci left: 1.704123e-02	ci right 1.889396e-02	k: 1436	n:80000
LAMP1   80000 perm   15 sec   (5347 perm/sec)   p_kst 1.795000e-02   p_cons 3.724750e-01   p_joint 3.399125e-01

Joint ci ratio: 1.836782e-02	ci left: 3.329250e-01	ci right 3.391078e-01	k: 30241	n:90000
Cons ci ratio: 1.697386e-02	ci left: 3.689296e-01	ci right 3.752564e-01	k: 33488	n:90000
KS ci ratio: 9.697032e-02	ci left: 1.696786e-02	ci right 1.870786e-02	k: 1604	n:90000
LAMP1   90000 perm   17 sec   (5234 perm/sec)   p_kst 1.782222e-02   p_cons 3.720889e-01   p_joint 3.360111e-01

Outputting figure to mutsig2_images.part000000000095/LAMP1.2_1290_90000_0.017822_0.37209_0.33601.png
                gene_name: LAMP1
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 75 percent done.
LAPTM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
Cons ci ratio: 7.745522e-02	ci left: 1.959420e-01	ci right 2.118309e-01	k: 2038	n:10000
KS ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
LAPTM5   10000 perm   1 sec   (7498 perm/sec)   p_kst 7.705000e-01   p_cons 2.038000e-01   p_joint 7.701000e-01

Outputting figure to mutsig2_images.part000000000095/LAPTM5.2_821_10000_0.7705_0.2038_0.7701.png
                gene_name: LAPTM5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 77 percent done.
LARP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
LARP7   10000 perm   1 sec   (6846 perm/sec)   p_kst 7.295000e-01   p_cons 8.382000e-01   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000095/LARP7.2_1797_10000_0.7295_0.8382_0.8597.png
                gene_name: LARP7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 78 percent done.
LARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
KS ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
LARS2   10000 perm   2 sec   (6501 perm/sec)   p_kst 3.074000e-01   p_cons 7.790000e-02   p_joint 3.303000e-01

Joint ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
Cons ci ratio: 9.258836e-02	ci left: 7.842928e-02	ci right 8.609269e-02	k: 1644	n:20000
KS ci ratio: 4.113714e-02	ci left: 3.057805e-01	ci right 3.186741e-01	k: 6244	n:20000
LARS2   20000 perm   3 sec   (5867 perm/sec)   p_kst 3.122000e-01   p_cons 8.220000e-02   p_joint 1.220000e-01

Outputting figure to mutsig2_images.part000000000095/LARS2.2_2792_20000_0.3122_0.0822_0.122.png
                gene_name: LARS2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 80 percent done.
LASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
Cons ci ratio: 9.777696e-03	ci left: 9.367201e-01	ci right 9.460207e-01	k: 9415	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
LASP1   10000 perm   1 sec   (7411 perm/sec)   p_kst 2.918000e-01   p_cons 9.415000e-01   p_joint 4.719000e-01

Outputting figure to mutsig2_images.part000000000095/LASP1.2_814_10000_0.2918_0.9415_0.4719.png
                gene_name: LASP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 82 percent done.
LASS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
Cons ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
LASS3   10000 perm   1 sec   (7400 perm/sec)   p_kst 1.500000e-03   p_cons 6.979000e-01   p_joint 5.700000e-03

Joint ci ratio: 4.710861e-01	ci left: 2.641171e-03	ci right 4.308347e-03	k: 68	n:20000
Cons ci ratio: 1.733881e-02	ci left: 7.124624e-01	ci right 7.249740e-01	k: 14375	n:20000
KS ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
LASS3   20000 perm   3 sec   (6522 perm/sec)   p_kst 1.700000e-03   p_cons 7.187500e-01   p_joint 3.400000e-03

Joint ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
Cons ci ratio: 1.412742e-02	ci left: 7.144792e-01	ci right 7.246782e-01	k: 21588	n:30000
KS ci ratio: 5.379686e-01	ci left: 1.294799e-03	ci right 2.272423e-03	k: 52	n:30000
LASS3   30000 perm   5 sec   (6199 perm/sec)   p_kst 1.733333e-03   p_cons 7.196000e-01   p_joint 5.100000e-03

Joint ci ratio: 2.605941e-01	ci left: 4.892283e-03	ci right 6.380868e-03	k: 224	n:40000
Cons ci ratio: 1.226810e-02	ci left: 7.140645e-01	ci right 7.229038e-01	k: 28740	n:40000
KS ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
LASS3   40000 perm   7 sec   (5992 perm/sec)   p_kst 1.950000e-03   p_cons 7.185000e-01   p_joint 5.600000e-03

Joint ci ratio: 2.327711e-01	ci left: 4.983585e-03	ci right 6.314797e-03	k: 281	n:50000
Cons ci ratio: 1.096372e-02	ci left: 7.148768e-01	ci right 7.227777e-01	k: 35942	n:50000
KS ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
LASS3   50000 perm   9 sec   (5817 perm/sec)   p_kst 1.940000e-03   p_cons 7.188400e-01   p_joint 5.620000e-03

Joint ci ratio: 3.085220e-01	ci left: 2.269907e-03	ci right 3.112677e-03	k: 160	n:60000
Cons ci ratio: 1.042834e-02	ci left: 6.982553e-01	ci right 7.055918e-01	k: 42116	n:60000
KS ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
LASS3   60000 perm   11 sec   (5669 perm/sec)   p_kst 1.950000e-03   p_cons 7.019333e-01   p_joint 2.666667e-03

Joint ci ratio: 2.926176e-01	ci left: 2.183384e-03	ci right 2.944500e-03	k: 178	n:70000
Cons ci ratio: 9.630837e-03	ci left: 6.995709e-01	ci right 7.063552e-01	k: 49208	n:70000
KS ci ratio: 3.434849e-01	ci left: 1.538806e-03	ci right 2.189314e-03	k: 129	n:70000
LASS3   70000 perm   13 sec   (5533 perm/sec)   p_kst 1.842857e-03   p_cons 7.029714e-01   p_joint 2.542857e-03

Joint ci ratio: 2.847993e-01	ci left: 2.026386e-03	ci right 2.710502e-03	k: 188	n:80000
Cons ci ratio: 8.990961e-03	ci left: 7.006225e-01	ci right 7.069627e-01	k: 56304	n:80000
KS ci ratio: 3.145548e-01	ci left: 1.633204e-03	ci right 2.253807e-03	k: 154	n:80000
LASS3   80000 perm   15 sec   (5407 perm/sec)   p_kst 1.925000e-03   p_cons 7.038000e-01   p_joint 2.350000e-03

Joint ci ratio: 3.030555e-01	ci left: 1.574734e-03	ci right 2.147028e-03	k: 166	n:90000
Cons ci ratio: 8.487836e-03	ci left: 7.002590e-01	ci right 7.062390e-01	k: 63293	n:90000
KS ci ratio: 3.030555e-01	ci left: 1.574734e-03	ci right 2.147028e-03	k: 166	n:90000
LASS3   90000 perm   17 sec   (5296 perm/sec)   p_kst 1.844444e-03   p_cons 7.032556e-01   p_joint 1.844444e-03

Joint ci ratio: 2.952195e-01	ci left: 1.500499e-03	ci right 2.029073e-03	k: 175	n:100000
Cons ci ratio: 8.045050e-03	ci left: 7.007888e-01	ci right 7.064594e-01	k: 70363	n:100000
KS ci ratio: 2.952195e-01	ci left: 1.500499e-03	ci right 2.029073e-03	k: 175	n:100000
LASS3   100000 perm   19 sec   (5195 perm/sec)   p_kst 1.750000e-03   p_cons 7.036300e-01   p_joint 1.750000e-03

Joint ci ratio: 3.346981e-01	ci left: 1.037412e-03	ci right 1.462314e-03	k: 136	n:110000
Cons ci ratio: 7.656332e-03	ci left: 7.017026e-01	ci right 7.071048e-01	k: 77485	n:110000
KS ci ratio: 2.755556e-01	ci left: 1.583565e-03	ci right 2.097816e-03	k: 201	n:110000
LASS3   110000 perm   22 sec   (5100 perm/sec)   p_kst 1.827273e-03   p_cons 7.044091e-01   p_joint 1.236364e-03

Joint ci ratio: 3.209381e-01	ci left: 1.042735e-03	ci right 1.448653e-03	k: 148	n:120000
Cons ci ratio: 7.333623e-03	ci left: 7.016337e-01	ci right 7.068064e-01	k: 84507	n:120000
KS ci ratio: 2.634437e-01	ci left: 1.599243e-03	ci right 2.091998e-03	k: 220	n:120000
LASS3   120000 perm   24 sec   (5011 perm/sec)   p_kst 1.833333e-03   p_cons 7.042250e-01   p_joint 1.233333e-03

Joint ci ratio: 3.068444e-01	ci left: 1.061740e-03	ci right 1.453360e-03	k: 162	n:130000
Cons ci ratio: 7.044261e-03	ci left: 7.018340e-01	ci right 7.068030e-01	k: 91562	n:130000
KS ci ratio: 2.543982e-01	ci left: 1.591315e-03	ci right 2.062122e-03	k: 236	n:130000
LASS3   130000 perm   26 sec   (4927 perm/sec)   p_kst 1.815385e-03   p_cons 7.043231e-01   p_joint 1.246154e-03

Joint ci ratio: 2.961378e-01	ci left: 1.065134e-03	ci right 1.441726e-03	k: 174	n:140000
Cons ci ratio: 6.794218e-03	ci left: 7.015437e-01	ci right 7.063335e-01	k: 98552	n:140000
KS ci ratio: 2.452554e-01	ci left: 1.598174e-03	ci right 2.051430e-03	k: 254	n:140000
LASS3   140000 perm   29 sec   (4844 perm/sec)   p_kst 1.814286e-03   p_cons 7.039429e-01   p_joint 1.242857e-03

Joint ci ratio: 2.344651e-01	ci left: 1.642022e-03	ci right 2.084255e-03	k: 278	n:150000
Cons ci ratio: 6.556012e-03	ci left: 7.021236e-01	ci right 7.067485e-01	k: 105666	n:150000
KS ci ratio: 2.344651e-01	ci left: 1.642022e-03	ci right 2.084255e-03	k: 278	n:150000
LASS3   150000 perm   31 sec   (4765 perm/sec)   p_kst 1.853333e-03   p_cons 7.044400e-01   p_joint 1.853333e-03

Joint ci ratio: 2.261083e-01	ci left: 1.663078e-03	ci right 2.092794e-03	k: 299	n:160000
Cons ci ratio: 6.358639e-03	ci left: 7.014871e-01	ci right 7.059680e-01	k: 112597	n:160000
KS ci ratio: 2.261083e-01	ci left: 1.663078e-03	ci right 2.092794e-03	k: 299	n:160000
LASS3   160000 perm   34 sec   (4682 perm/sec)   p_kst 1.868750e-03   p_cons 7.037313e-01   p_joint 1.868750e-03

Joint ci ratio: 2.611596e-01	ci left: 1.150824e-03	ci right 1.501831e-03	k: 224	n:170000
Cons ci ratio: 6.169423e-03	ci left: 7.015112e-01	ci right 7.058583e-01	k: 119627	n:170000
KS ci ratio: 2.185858e-01	ci left: 1.681903e-03	ci right 2.100083e-03	k: 320	n:170000
LASS3   170000 perm   37 sec   (4600 perm/sec)   p_kst 1.882353e-03   p_cons 7.036882e-01   p_joint 1.317647e-03

Joint ci ratio: 2.571940e-01	ci left: 1.123250e-03	ci right 1.459809e-03	k: 231	n:180000
Cons ci ratio: 5.993916e-03	ci left: 7.016903e-01	ci right 7.059143e-01	k: 126685	n:180000
KS ci ratio: 2.146153e-01	ci left: 1.651511e-03	ci right 2.053693e-03	k: 332	n:180000
LASS3   180000 perm   40 sec   (4523 perm/sec)   p_kst 1.844444e-03   p_cons 7.038056e-01   p_joint 1.283333e-03

Joint ci ratio: 2.497676e-01	ci left: 1.133136e-03	ci right 1.461331e-03	k: 245	n:190000
Cons ci ratio: 5.832434e-03	ci left: 7.018626e-01	ci right 7.059733e-01	k: 133745	n:190000
KS ci ratio: 2.090402e-01	ci left: 1.654302e-03	ci right 2.045359e-03	k: 350	n:190000
LASS3   190000 perm   43 sec   (4448 perm/sec)   p_kst 1.842105e-03   p_cons 7.039211e-01   p_joint 1.289474e-03

Joint ci ratio: 2.410994e-01	ci left: 1.160948e-03	ci right 1.483784e-03	k: 263	n:200000
Cons ci ratio: 5.683951e-03	ci left: 7.019739e-01	ci right 7.059802e-01	k: 140796	n:200000
KS ci ratio: 2.019679e-01	ci left: 1.690159e-03	ci right 2.074509e-03	k: 375	n:200000
LASS3   200000 perm   46 sec   (4379 perm/sec)   p_kst 1.875000e-03   p_cons 7.039800e-01   p_joint 1.315000e-03

Joint ci ratio: 2.324513e-01	ci left: 1.195257e-03	ci right 1.514001e-03	k: 283	n:210000
Cons ci ratio: 5.550632e-03	ci left: 7.017466e-01	ci right 7.056573e-01	k: 147778	n:210000
KS ci ratio: 1.950812e-01	ci left: 1.731861e-03	ci right 2.110671e-03	k: 402	n:210000
LASS3   210000 perm   49 sec   (4309 perm/sec)   p_kst 1.914286e-03   p_cons 7.037048e-01   p_joint 1.347619e-03

Joint ci ratio: 2.273074e-01	ci left: 1.196616e-03	ci right 1.507670e-03	k: 296	n:220000
Cons ci ratio: 5.425323e-03	ci left: 7.016139e-01	ci right 7.054353e-01	k: 154776	n:220000
KS ci ratio: 1.897402e-01	ci left: 1.752652e-03	ci right 2.124304e-03	k: 425	n:220000
LASS3   220000 perm   52 sec   (4242 perm/sec)   p_kst 1.931818e-03   p_cons 7.035273e-01   p_joint 1.345455e-03

Joint ci ratio: 2.221320e-01	ci left: 1.202033e-03	ci right 1.506409e-03	k: 310	n:230000
Cons ci ratio: 5.304704e-03	ci left: 7.017638e-01	ci right 7.055006e-01	k: 161836	n:230000
KS ci ratio: 1.862757e-01	ci left: 1.742740e-03	ci right 2.104779e-03	k: 441	n:230000
LASS3   230000 perm   55 sec   (4182 perm/sec)   p_kst 1.917391e-03   p_cons 7.036348e-01   p_joint 1.347826e-03

Joint ci ratio: 1.821989e-01	ci left: 1.749616e-03	ci right 2.104252e-03	k: 461	n:240000
Cons ci ratio: 5.194640e-03	ci left: 7.016724e-01	ci right 7.053310e-01	k: 168841	n:240000
KS ci ratio: 1.821989e-01	ci left: 1.749616e-03	ci right 2.104252e-03	k: 461	n:240000
LASS3   240000 perm   58 sec   (4120 perm/sec)   p_kst 1.920833e-03   p_cons 7.035042e-01   p_joint 1.920833e-03

Joint ci ratio: 1.780089e-01	ci left: 1.763666e-03	ci right 2.112043e-03	k: 483	n:250000
Cons ci ratio: 5.088762e-03	ci left: 7.017855e-01	ci right 7.053698e-01	k: 175895	n:250000
KS ci ratio: 1.780089e-01	ci left: 1.763666e-03	ci right 2.112043e-03	k: 483	n:250000
LASS3   250000 perm   62 sec   (4061 perm/sec)   p_kst 1.932000e-03   p_cons 7.035800e-01   p_joint 1.932000e-03

Joint ci ratio: 1.742679e-01	ci left: 1.773042e-03	ci right 2.115136e-03	k: 504	n:260000
Cons ci ratio: 4.989105e-03	ci left: 7.018906e-01	ci right 7.054049e-01	k: 182949	n:260000
KS ci ratio: 1.742679e-01	ci left: 1.773042e-03	ci right 2.115136e-03	k: 504	n:260000
LASS3   260000 perm   65 sec   (4004 perm/sec)   p_kst 1.938462e-03   p_cons 7.036500e-01   p_joint 1.938462e-03

Joint ci ratio: 1.707532e-01	ci left: 1.781794e-03	ci right 2.117930e-03	k: 525	n:270000
Cons ci ratio: 4.895430e-03	ci left: 7.019588e-01	ci right 7.054072e-01	k: 189995	n:270000
KS ci ratio: 1.707532e-01	ci left: 1.781794e-03	ci right 2.117930e-03	k: 525	n:270000
LASS3   270000 perm   68 sec   (3944 perm/sec)   p_kst 1.944444e-03   p_cons 7.036852e-01   p_joint 1.944444e-03

Joint ci ratio: 1.671371e-01	ci left: 1.796830e-03	ci right 2.127901e-03	k: 548	n:280000
Cons ci ratio: 4.808899e-03	ci left: 7.018438e-01	ci right 7.052306e-01	k: 196991	n:280000
KS ci ratio: 1.671371e-01	ci left: 1.796830e-03	ci right 2.127901e-03	k: 548	n:280000
LASS3   280000 perm   72 sec   (3884 perm/sec)   p_kst 1.957143e-03   p_cons 7.035393e-01   p_joint 1.957143e-03

Joint ci ratio: 1.649009e-01	ci left: 1.784444e-03	ci right 2.108397e-03	k: 563	n:290000
Cons ci ratio: 4.727345e-03	ci left: 7.016889e-01	ci right 7.050173e-01	k: 203973	n:290000
KS ci ratio: 1.649009e-01	ci left: 1.784444e-03	ci right 2.108397e-03	k: 563	n:290000
LASS3   290000 perm   76 sec   (3837 perm/sec)   p_kst 1.941379e-03   p_cons 7.033552e-01   p_joint 1.941379e-03

Joint ci ratio: 1.626115e-01	ci left: 1.776110e-03	ci right 2.093635e-03	k: 579	n:300000
Cons ci ratio: 4.648578e-03	ci left: 7.016551e-01	ci right 7.049277e-01	k: 210988	n:300000
KS ci ratio: 1.626115e-01	ci left: 1.776110e-03	ci right 2.093635e-03	k: 579	n:300000
LASS3   300000 perm   79 sec   (3790 perm/sec)   p_kst 1.930000e-03   p_cons 7.032933e-01   p_joint 1.930000e-03

Joint ci ratio: 1.593468e-01	ci left: 1.793118e-03	ci right 2.106633e-03	k: 603	n:310000
Cons ci ratio: 4.575175e-03	ci left: 7.014817e-01	ci right 7.047016e-01	k: 217959	n:310000
KS ci ratio: 1.593468e-01	ci left: 1.793118e-03	ci right 2.106633e-03	k: 603	n:310000
LASS3   310000 perm   83 sec   (3741 perm/sec)   p_kst 1.945161e-03   p_cons 7.030935e-01   p_joint 1.945161e-03

Joint ci ratio: 1.575329e-01	ci left: 1.779097e-03	ci right 2.086285e-03	k: 617	n:320000
Cons ci ratio: 4.504872e-03	ci left: 7.013446e-01	ci right 7.045143e-01	k: 224938	n:320000
KS ci ratio: 1.575329e-01	ci left: 1.779097e-03	ci right 2.086285e-03	k: 617	n:320000
LASS3   320000 perm   87 sec   (3694 perm/sec)   p_kst 1.928125e-03   p_cons 7.029313e-01   p_joint 1.928125e-03

Joint ci ratio: 1.557796e-01	ci left: 1.765945e-03	ci right 2.067151e-03	k: 631	n:330000
Cons ci ratio: 4.436133e-03	ci left: 7.013649e-01	ci right 7.044861e-01	k: 231966	n:330000
KS ci ratio: 1.557796e-01	ci left: 1.765945e-03	ci right 2.067151e-03	k: 631	n:330000
LASS3   330000 perm   90 sec   (3647 perm/sec)   p_kst 1.912121e-03   p_cons 7.029273e-01   p_joint 1.912121e-03

Joint ci ratio: 1.536078e-01	ci left: 1.764897e-03	ci right 2.061342e-03	k: 649	n:340000
Cons ci ratio: 4.368694e-03	ci left: 7.015522e-01	ci right 7.046267e-01	k: 239051	n:340000
KS ci ratio: 1.536078e-01	ci left: 1.764897e-03	ci right 2.061342e-03	k: 649	n:340000
LASS3   340000 perm   94 sec   (3602 perm/sec)   p_kst 1.908824e-03   p_cons 7.030912e-01   p_joint 1.908824e-03

Joint ci ratio: 1.510718e-01	ci left: 1.774934e-03	ci right 2.067697e-03	k: 671	n:350000
Cons ci ratio: 4.306832e-03	ci left: 7.014774e-01	ci right 7.045078e-01	k: 246048	n:350000
KS ci ratio: 1.510718e-01	ci left: 1.774934e-03	ci right 2.067697e-03	k: 671	n:350000
LASS3   350000 perm   98 sec   (3557 perm/sec)   p_kst 1.917143e-03   p_cons 7.029943e-01   p_joint 1.917143e-03

Joint ci ratio: 1.486575e-01	ci left: 1.784450e-03	ci right 2.073661e-03	k: 693	n:360000
Cons ci ratio: 4.246338e-03	ci left: 7.015238e-01	ci right 7.045118e-01	k: 253087	n:360000
KS ci ratio: 1.486575e-01	ci left: 1.784450e-03	ci right 2.073661e-03	k: 693	n:360000
LASS3   360000 perm   102 sec   (3513 perm/sec)   p_kst 1.925000e-03   p_cons 7.030194e-01   p_joint 1.925000e-03

Joint ci ratio: 1.470774e-01	ci left: 1.775262e-03	ci right 2.059656e-03	k: 708	n:370000
Cons ci ratio: 4.186805e-03	ci left: 7.017196e-01	ci right 7.046664e-01	k: 260182	n:370000
KS ci ratio: 1.470774e-01	ci left: 1.775262e-03	ci right 2.059656e-03	k: 708	n:370000
LASS3   370000 perm   107 sec   (3470 perm/sec)   p_kst 1.913514e-03   p_cons 7.031946e-01   p_joint 1.913514e-03

Joint ci ratio: 1.458497e-01	ci left: 1.758965e-03	ci right 2.038192e-03	k: 720	n:380000
Cons ci ratio: 4.131659e-03	ci left: 7.017077e-01	ci right 7.046155e-01	k: 267202	n:380000
KS ci ratio: 1.458497e-01	ci left: 1.758965e-03	ci right 2.038192e-03	k: 720	n:380000
LASS3   380000 perm   111 sec   (3429 perm/sec)   p_kst 1.894737e-03   p_cons 7.031632e-01   p_joint 1.894737e-03

Joint ci ratio: 1.441604e-01	ci left: 1.755871e-03	ci right 2.031101e-03	k: 737	n:390000
Cons ci ratio: 4.076758e-03	ci left: 7.018892e-01	ci right 7.047590e-01	k: 274297	n:390000
KS ci ratio: 1.441604e-01	ci left: 1.755871e-03	ci right 2.031101e-03	k: 737	n:390000
LASS3   390000 perm   115 sec   (3389 perm/sec)   p_kst 1.889744e-03   p_cons 7.033256e-01   p_joint 1.889744e-03

Joint ci ratio: 1.413148e-01	ci left: 1.784298e-03	ci right 2.057998e-03	k: 767	n:400000
Cons ci ratio: 4.025941e-03	ci left: 7.018591e-01	ci right 7.046929e-01	k: 281311	n:400000
KS ci ratio: 1.413148e-01	ci left: 1.784298e-03	ci right 2.057998e-03	k: 767	n:400000
LASS3   400000 perm   119 sec   (3349 perm/sec)   p_kst 1.917500e-03   p_cons 7.032775e-01   p_joint 1.917500e-03

Joint ci ratio: 1.395986e-01	ci left: 1.785492e-03	ci right 2.055771e-03	k: 786	n:410000
Cons ci ratio: 3.975444e-03	ci left: 7.019919e-01	ci right 7.047906e-01	k: 288391	n:410000
KS ci ratio: 1.395986e-01	ci left: 1.785492e-03	ci right 2.055771e-03	k: 786	n:410000
LASS3   410000 perm   124 sec   (3310 perm/sec)   p_kst 1.917073e-03   p_cons 7.033927e-01   p_joint 1.917073e-03

Joint ci ratio: 1.372626e-01	ci left: 1.805041e-03	ci right 2.073334e-03	k: 813	n:420000
Cons ci ratio: 3.927494e-03	ci left: 7.020446e-01	ci right 7.048097e-01	k: 295440	n:420000
KS ci ratio: 1.372626e-01	ci left: 1.805041e-03	ci right 2.073334e-03	k: 813	n:420000
LASS3   420000 perm   128 sec   (3271 perm/sec)   p_kst 1.935714e-03   p_cons 7.034286e-01   p_joint 1.935714e-03

Joint ci ratio: 1.356066e-01	ci left: 1.807987e-03	ci right 2.073215e-03	k: 833	n:430000
Cons ci ratio: 3.881715e-03	ci left: 7.020439e-01	ci right 7.047766e-01	k: 302467	n:430000
KS ci ratio: 1.356066e-01	ci left: 1.807987e-03	ci right 2.073215e-03	k: 833	n:430000
LASS3   430000 perm   133 sec   (3234 perm/sec)   p_kst 1.937209e-03   p_cons 7.034116e-01   p_joint 1.937209e-03

Joint ci ratio: 1.337740e-01	ci left: 1.817408e-03	ci right 2.080129e-03	k: 856	n:440000
Cons ci ratio: 3.836747e-03	ci left: 7.021253e-01	ci right 7.048266e-01	k: 309530	n:440000
KS ci ratio: 1.337740e-01	ci left: 1.817408e-03	ci right 2.080129e-03	k: 856	n:440000
LASS3   440000 perm   138 sec   (3198 perm/sec)   p_kst 1.945455e-03   p_cons 7.034773e-01   p_joint 1.945455e-03

Joint ci ratio: 1.327718e-01	ci left: 1.804946e-03	ci right 2.063756e-03	k: 869	n:450000
Cons ci ratio: 3.793489e-03	ci left: 7.021832e-01	ci right 7.048542e-01	k: 316584	n:450000
KS ci ratio: 1.327718e-01	ci left: 1.804946e-03	ci right 2.063756e-03	k: 869	n:450000
LASS3   450000 perm   142 sec   (3162 perm/sec)   p_kst 1.931111e-03   p_cons 7.035200e-01   p_joint 1.931111e-03

Joint ci ratio: 1.317917e-01	ci left: 1.793033e-03	ci right 2.048088e-03	k: 882	n:460000
Cons ci ratio: 3.750683e-03	ci left: 7.023476e-01	ci right 7.049890e-01	k: 323688	n:460000
KS ci ratio: 1.317917e-01	ci left: 1.793033e-03	ci right 2.048088e-03	k: 882	n:460000
LASS3   460000 perm   147 sec   (3128 perm/sec)   p_kst 1.917391e-03   p_cons 7.036696e-01   p_joint 1.917391e-03

Joint ci ratio: 1.308330e-01	ci left: 1.781634e-03	ci right 2.033080e-03	k: 895	n:470000
Cons ci ratio: 3.711395e-03	ci left: 7.022687e-01	ci right 7.048820e-01	k: 330681	n:470000
KS ci ratio: 1.308330e-01	ci left: 1.781634e-03	ci right 2.033080e-03	k: 895	n:470000
LASS3   470000 perm   152 sec   (3093 perm/sec)   p_kst 1.904255e-03   p_cons 7.035766e-01   p_joint 1.904255e-03

Joint ci ratio: 1.291145e-01	ci left: 1.792892e-03	ci right 2.042349e-03	k: 919	n:480000
Cons ci ratio: 3.672747e-03	ci left: 7.022579e-01	ci right 7.048439e-01	k: 337705	n:480000
KS ci ratio: 1.291145e-01	ci left: 1.792892e-03	ci right 2.042349e-03	k: 919	n:480000
LASS3   480000 perm   157 sec   (3059 perm/sec)   p_kst 1.914583e-03   p_cons 7.035521e-01   p_joint 1.914583e-03

Joint ci ratio: 1.274620e-01	ci left: 1.803710e-03	ci right 2.051218e-03	k: 943	n:490000
Cons ci ratio: 3.635531e-03	ci left: 7.022190e-01	ci right 7.047786e-01	k: 344715	n:490000
KS ci ratio: 1.274620e-01	ci left: 1.803710e-03	ci right 2.051218e-03	k: 943	n:490000
LASS3   490000 perm   162 sec   (3027 perm/sec)   p_kst 1.924490e-03   p_cons 7.035000e-01   p_joint 1.924490e-03

Joint ci ratio: 1.258063e-01	ci left: 1.816053e-03	ci right 2.061776e-03	k: 968	n:500000
Cons ci ratio: 3.597319e-03	ci left: 7.024261e-01	ci right 7.049595e-01	k: 351847	n:500000
KS ci ratio: 1.258063e-01	ci left: 1.816053e-03	ci right 2.061776e-03	k: 968	n:500000
LASS3   500000 perm   167 sec   (2998 perm/sec)   p_kst 1.936000e-03   p_cons 7.036940e-01   p_joint 1.936000e-03

Joint ci ratio: 1.247808e-01	ci left: 1.810833e-03	ci right 2.053705e-03	k: 984	n:510000
Cons ci ratio: 3.562461e-03	ci left: 7.023701e-01	ci right 7.048786e-01	k: 358849	n:510000
KS ci ratio: 1.247808e-01	ci left: 1.810833e-03	ci right 2.053705e-03	k: 984	n:510000
LASS3   510000 perm   172 sec   (2968 perm/sec)   p_kst 1.929412e-03   p_cons 7.036255e-01   p_joint 1.929412e-03

Joint ci ratio: 1.237799e-01	ci left: 1.805822e-03	ci right 2.045936e-03	k: 1000	n:520000
Cons ci ratio: 3.528582e-03	ci left: 7.023182e-01	ci right 7.048026e-01	k: 365852	n:520000
KS ci ratio: 1.237799e-01	ci left: 1.805822e-03	ci right 2.045936e-03	k: 1000	n:520000
LASS3   520000 perm   177 sec   (2939 perm/sec)   p_kst 1.923077e-03   p_cons 7.035615e-01   p_joint 1.923077e-03

Joint ci ratio: 1.222619e-01	ci left: 1.817468e-03	ci right 2.055953e-03	k: 1025	n:530000
Cons ci ratio: 3.495935e-03	ci left: 7.022344e-01	ci right 7.046955e-01	k: 372837	n:530000
KS ci ratio: 1.222619e-01	ci left: 1.817468e-03	ci right 2.055953e-03	k: 1025	n:530000
LASS3   530000 perm   182 sec   (2912 perm/sec)   p_kst 1.933962e-03   p_cons 7.034660e-01   p_joint 1.933962e-03

Joint ci ratio: 1.210294e-01	ci left: 1.821517e-03	ci right 2.057951e-03	k: 1046	n:540000
Cons ci ratio: 3.464178e-03	ci left: 7.021538e-01	ci right 7.045922e-01	k: 379822	n:540000
KS ci ratio: 1.210294e-01	ci left: 1.821517e-03	ci right 2.057951e-03	k: 1046	n:540000
LASS3   540000 perm   187 sec   (2884 perm/sec)   p_kst 1.937037e-03   p_cons 7.033741e-01   p_joint 1.937037e-03

Joint ci ratio: 1.202288e-01	ci left: 1.813085e-03	ci right 2.046757e-03	k: 1060	n:550000
Cons ci ratio: 3.432612e-03	ci left: 7.021563e-01	ci right 7.045725e-01	k: 386851	n:550000
KS ci ratio: 1.202288e-01	ci left: 1.813085e-03	ci right 2.046757e-03	k: 1060	n:550000
LASS3   550000 perm   192 sec   (2857 perm/sec)   p_kst 1.927273e-03   p_cons 7.033655e-01   p_joint 1.927273e-03

Joint ci ratio: 1.193883e-01	ci left: 1.806691e-03	ci right 2.037796e-03	k: 1075	n:560000
Cons ci ratio: 3.402228e-03	ci left: 7.021177e-01	ci right 7.045123e-01	k: 393857	n:560000
KS ci ratio: 1.193883e-01	ci left: 1.806691e-03	ci right 2.037796e-03	k: 1075	n:560000
LASS3   560000 perm   198 sec   (2831 perm/sec)   p_kst 1.919643e-03   p_cons 7.033161e-01   p_joint 1.919643e-03

Joint ci ratio: 1.182399e-01	ci left: 1.810742e-03	ci right 2.039982e-03	k: 1096	n:570000
Cons ci ratio: 3.371602e-03	ci left: 7.022088e-01	ci right 7.045821e-01	k: 400936	n:570000
KS ci ratio: 1.182399e-01	ci left: 1.810742e-03	ci right 2.039982e-03	k: 1096	n:570000
LASS3   570000 perm   203 sec   (2804 perm/sec)   p_kst 1.922807e-03   p_cons 7.033965e-01   p_joint 1.922807e-03

Joint ci ratio: 1.170715e-01	ci left: 1.816337e-03	ci right 2.043856e-03	k: 1118	n:580000
Cons ci ratio: 3.341153e-03	ci left: 7.023763e-01	ci right 7.047286e-01	k: 408061	n:580000
KS ci ratio: 1.170715e-01	ci left: 1.816337e-03	ci right 2.043856e-03	k: 1118	n:580000
LASS3   580000 perm   209 sec   (2779 perm/sec)   p_kst 1.927586e-03   p_cons 7.035534e-01   p_joint 1.927586e-03

Joint ci ratio: 1.159371e-01	ci left: 1.821754e-03	ci right 2.047589e-03	k: 1140	n:590000
Cons ci ratio: 3.313141e-03	ci left: 7.023328e-01	ci right 7.046652e-01	k: 415065	n:590000
KS ci ratio: 1.159371e-01	ci left: 1.821754e-03	ci right 2.047589e-03	k: 1140	n:590000
LASS3   590000 perm   214 sec   (2754 perm/sec)   p_kst 1.932203e-03   p_cons 7.035000e-01   p_joint 1.932203e-03

Joint ci ratio: 1.151330e-01	ci left: 1.817287e-03	ci right 2.040899e-03	k: 1156	n:600000
Cons ci ratio: 3.284878e-03	ci left: 7.024110e-01	ci right 7.047237e-01	k: 422141	n:600000
KS ci ratio: 1.151330e-01	ci left: 1.817287e-03	ci right 2.040899e-03	k: 1156	n:600000
LASS3   600000 perm   220 sec   (2729 perm/sec)   p_kst 1.926667e-03   p_cons 7.035683e-01   p_joint 1.926667e-03

Joint ci ratio: 1.141020e-01	ci left: 1.820935e-03	ci right 2.042855e-03	k: 1177	n:610000
Cons ci ratio: 3.256915e-03	ci left: 7.025392e-01	ci right 7.048326e-01	k: 429249	n:610000
KS ci ratio: 1.141020e-01	ci left: 1.820935e-03	ci right 2.042855e-03	k: 1177	n:610000
LASS3   610000 perm   226 sec   (2705 perm/sec)   p_kst 1.929508e-03   p_cons 7.036869e-01   p_joint 1.929508e-03

Joint ci ratio: 1.133828e-01	ci left: 1.815070e-03	ci right 2.034787e-03	k: 1192	n:620000
Cons ci ratio: 3.230379e-03	ci left: 7.025697e-01	ci right 7.048445e-01	k: 436299	n:620000
KS ci ratio: 1.133828e-01	ci left: 1.815070e-03	ci right 2.034787e-03	k: 1192	n:620000
LASS3   620000 perm   231 sec   (2680 perm/sec)   p_kst 1.922581e-03   p_cons 7.037081e-01   p_joint 1.922581e-03

Joint ci ratio: 1.126771e-01	ci left: 1.809395e-03	ci right 2.026972e-03	k: 1207	n:630000
Cons ci ratio: 3.204164e-03	ci left: 7.026406e-01	ci right 7.048972e-01	k: 443375	n:630000
KS ci ratio: 1.126771e-01	ci left: 1.809395e-03	ci right 2.026972e-03	k: 1207	n:630000
LASS3   630000 perm   237 sec   (2656 perm/sec)   p_kst 1.915873e-03   p_cons 7.037698e-01   p_joint 1.915873e-03

Joint ci ratio: 1.116646e-01	ci left: 1.814534e-03	ci right 2.030639e-03	k: 1229	n:640000
Cons ci ratio: 3.178481e-03	ci left: 7.027219e-01	ci right 7.049606e-01	k: 450459	n:640000
KS ci ratio: 1.116646e-01	ci left: 1.814534e-03	ci right 2.030639e-03	k: 1229	n:640000
LASS3   640000 perm   243 sec   (2633 perm/sec)   p_kst 1.920312e-03   p_cons 7.038422e-01   p_joint 1.920312e-03

Joint ci ratio: 1.106789e-01	ci left: 1.819524e-03	ci right 2.034185e-03	k: 1251	n:650000
Cons ci ratio: 3.154303e-03	ci left: 7.026822e-01	ci right 7.049037e-01	k: 457466	n:650000
KS ci ratio: 1.106789e-01	ci left: 1.819524e-03	ci right 2.034185e-03	k: 1251	n:650000
LASS3   650000 perm   249 sec   (2610 perm/sec)   p_kst 1.924615e-03   p_cons 7.037938e-01   p_joint 1.924615e-03

Joint ci ratio: 1.093754e-01	ci left: 1.836160e-03	ci right 2.050068e-03	k: 1281	n:660000
Cons ci ratio: 3.130087e-03	ci left: 7.027211e-01	ci right 7.049256e-01	k: 464524	n:660000
KS ci ratio: 1.093754e-01	ci left: 1.836160e-03	ci right 2.050068e-03	k: 1281	n:660000
LASS3   660000 perm   255 sec   (2587 perm/sec)   p_kst 1.940909e-03   p_cons 7.038242e-01   p_joint 1.940909e-03

Joint ci ratio: 1.085320e-01	ci left: 1.837792e-03	ci right 2.050134e-03	k: 1301	n:670000
Cons ci ratio: 3.107054e-03	ci left: 7.026737e-01	ci right 7.048618e-01	k: 471525	n:670000
KS ci ratio: 1.085320e-01	ci left: 1.837792e-03	ci right 2.050134e-03	k: 1301	n:670000
LASS3   670000 perm   261 sec   (2565 perm/sec)   p_kst 1.941791e-03   p_cons 7.037687e-01   p_joint 1.941791e-03

Joint ci ratio: 1.078715e-01	ci left: 1.833658e-03	ci right 2.044151e-03	k: 1317	n:680000
Cons ci ratio: 3.084023e-03	ci left: 7.026955e-01	ci right 7.048674e-01	k: 478572	n:680000
KS ci ratio: 1.078715e-01	ci left: 1.833658e-03	ci right 2.044151e-03	k: 1317	n:680000
LASS3   680000 perm   267 sec   (2544 perm/sec)   p_kst 1.936765e-03   p_cons 7.037824e-01   p_joint 1.936765e-03

Joint ci ratio: 1.071827e-01	ci left: 1.831058e-03	ci right 2.039826e-03	k: 1334	n:690000
Cons ci ratio: 3.061932e-03	ci left: 7.026573e-01	ci right 7.048135e-01	k: 485578	n:690000
KS ci ratio: 1.071827e-01	ci left: 1.831058e-03	ci right 2.039826e-03	k: 1334	n:690000
LASS3   690000 perm   274 sec   (2522 perm/sec)   p_kst 1.933333e-03   p_cons 7.037362e-01   p_joint 1.933333e-03

Joint ci ratio: 1.065069e-01	ci left: 1.828536e-03	ci right 2.035620e-03	k: 1351	n:700000
Cons ci ratio: 3.039215e-03	ci left: 7.027703e-01	ci right 7.049108e-01	k: 492689	n:700000
KS ci ratio: 1.065069e-01	ci left: 1.828536e-03	ci right 2.035620e-03	k: 1351	n:700000
LASS3   700000 perm   280 sec   (2501 perm/sec)   p_kst 1.930000e-03   p_cons 7.038414e-01   p_joint 1.930000e-03

Joint ci ratio: 1.056121e-01	ci left: 1.834318e-03	ci right 2.040202e-03	k: 1374	n:710000
Cons ci ratio: 3.018118e-03	ci left: 7.027252e-01	ci right 7.048506e-01	k: 499690	n:710000
KS ci ratio: 1.056121e-01	ci left: 1.834318e-03	ci right 2.040202e-03	k: 1374	n:710000
LASS3   710000 perm   286 sec   (2480 perm/sec)   p_kst 1.935211e-03   p_cons 7.037887e-01   p_joint 1.935211e-03

Joint ci ratio: 1.048899e-01	ci left: 1.834535e-03	ci right 2.038950e-03	k: 1393	n:720000
Cons ci ratio: 2.997174e-03	ci left: 7.027202e-01	ci right 7.048309e-01	k: 506719	n:720000
KS ci ratio: 1.048899e-01	ci left: 1.834535e-03	ci right 2.038950e-03	k: 1393	n:720000
LASS3   720000 perm   293 sec   (2460 perm/sec)   p_kst 1.934722e-03   p_cons 7.037764e-01   p_joint 1.934722e-03

Joint ci ratio: 1.040717e-01	ci left: 1.838754e-03	ci right 2.041943e-03	k: 1415	n:730000
Cons ci ratio: 2.976592e-03	ci left: 7.027251e-01	ci right 7.048213e-01	k: 513755	n:730000
KS ci ratio: 1.040717e-01	ci left: 1.838754e-03	ci right 2.041943e-03	k: 1415	n:730000
LASS3   730000 perm   299 sec   (2439 perm/sec)   p_kst 1.938356e-03   p_cons 7.037740e-01   p_joint 1.938356e-03

Joint ci ratio: 1.033083e-01	ci left: 1.841549e-03	ci right 2.043463e-03	k: 1436	n:740000
Cons ci ratio: 2.956850e-03	ci left: 7.026703e-01	ci right 7.047524e-01	k: 520747	n:740000
KS ci ratio: 1.033083e-01	ci left: 1.841549e-03	ci right 2.043463e-03	k: 1436	n:740000
LASS3   740000 perm   306 sec   (2419 perm/sec)   p_kst 1.940541e-03   p_cons 7.037122e-01   p_joint 1.940541e-03

Joint ci ratio: 1.024209e-01	ci left: 1.849471e-03	ci right 2.050407e-03	k: 1461	n:750000
Cons ci ratio: 2.936753e-03	ci left: 7.027225e-01	ci right 7.047906e-01	k: 527818	n:750000
KS ci ratio: 1.024209e-01	ci left: 1.849471e-03	ci right 2.050407e-03	k: 1461	n:750000
LASS3   750000 perm   312 sec   (2400 perm/sec)   p_kst 1.948000e-03   p_cons 7.037573e-01   p_joint 1.948000e-03

Joint ci ratio: 1.017962e-01	ci left: 1.848215e-03	ci right 2.047717e-03	k: 1479	n:760000
Cons ci ratio: 2.917300e-03	ci left: 7.027391e-01	ci right 7.047935e-01	k: 534863	n:760000
KS ci ratio: 1.017962e-01	ci left: 1.848215e-03	ci right 2.047717e-03	k: 1479	n:760000
LASS3   760000 perm   319 sec   (2382 perm/sec)   p_kst 1.946053e-03   p_cons 7.037671e-01   p_joint 1.946053e-03

Joint ci ratio: 1.009132e-01	ci left: 1.857123e-03	ci right 2.055744e-03	k: 1505	n:770000
Cons ci ratio: 2.898788e-03	ci left: 7.026748e-01	ci right 7.047159e-01	k: 541846	n:770000
KS ci ratio: 1.009132e-01	ci left: 1.857123e-03	ci right 2.055744e-03	k: 1505	n:770000
LASS3   770000 perm   326 sec   (2363 perm/sec)   p_kst 1.954545e-03   p_cons 7.036961e-01   p_joint 1.954545e-03

Joint ci ratio: 1.003486e-01	ci left: 1.854560e-03	ci right 2.051732e-03	k: 1522	n:780000
Cons ci ratio: 2.880748e-03	ci left: 7.025941e-01	ci right 7.046223e-01	k: 548815	n:780000
KS ci ratio: 1.003486e-01	ci left: 1.854560e-03	ci right 2.051732e-03	k: 1522	n:780000
LASS3   780000 perm   333 sec   (2344 perm/sec)   p_kst 1.951282e-03   p_cons 7.036090e-01   p_joint 1.951282e-03

Joint ci ratio: 9.966377e-02	ci left: 1.857002e-03	ci right 2.053008e-03	k: 1543	n:790000
Cons ci ratio: 2.862832e-03	ci left: 7.025460e-01	ci right 7.045614e-01	k: 555808	n:790000
KS ci ratio: 9.966377e-02	ci left: 1.857002e-03	ci right 2.053008e-03	k: 1543	n:790000
LASS3   790000 perm   340 sec   (2325 perm/sec)   p_kst 1.953165e-03   p_cons 7.035544e-01   p_joint 1.953165e-03

Outputting figure to mutsig2_images.part000000000095/LASS3.2_1192_790000_0.0019532_0.70355_0.0019532.png
                gene_name: LASS3
               theta_stop: 0.100 
                    nperm: 790000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 83 percent done.
LASS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
KS ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
LASS4   10000 perm   1 sec   (7266 perm/sec)   p_kst 4.704000e-01   p_cons 1.815000e-01   p_joint 2.186000e-01

Outputting figure to mutsig2_images.part000000000095/LASS4.2_1225_10000_0.4704_0.1815_0.2186.png
                gene_name: LASS4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 85 percent done.
LAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
LAT2   10000 perm   1 sec   (7682 perm/sec)   p_kst 7.037000e-01   p_cons 2.630000e-01   p_joint 9.592000e-01

Outputting figure to mutsig2_images.part000000000095/LAT2.2_776_10000_0.7037_0.263_0.9592.png
                gene_name: LAT2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
LAYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
Cons ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
KS ci ratio: 7.541582e-02	ci left: 2.046155e-01	ci right 2.207523e-01	k: 2126	n:10000
LAYN   10000 perm   1 sec   (7229 perm/sec)   p_kst 2.126000e-01   p_cons 8.544000e-01   p_joint 5.233000e-01

Outputting figure to mutsig2_images.part000000000095/LAYN.2_1153_10000_0.2126_0.8544_0.5233.png
                gene_name: LAYN
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 88 percent done.
LCE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
Cons ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
KS ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
LCE1B   10000 perm   1 sec   (7909 perm/sec)   p_kst 2.014000e-01   p_cons 3.489000e-01   p_joint 4.424000e-01

Outputting figure to mutsig2_images.part000000000095/LCE1B.2_361_10000_0.2014_0.3489_0.4424.png
                gene_name: LCE1B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 89 percent done.
LCE2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
KS ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
LCE2D   10000 perm   1 sec   (8147 perm/sec)   p_kst 3.218000e-01   p_cons 9.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCE2D.2_337_10000_0.3218_0.9414_1.png
                gene_name: LCE2D
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
LCE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
Cons ci ratio: 1.316462e-02	ci left: 8.926197e-01	ci right 9.045470e-01	k: 8987	n:10000
KS ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
LCE3A   10000 perm   1 sec   (7770 perm/sec)   p_kst 5.138000e-01   p_cons 8.987000e-01   p_joint 9.851000e-01

Outputting figure to mutsig2_images.part000000000095/LCE3A.2_273_10000_0.5138_0.8987_0.9851.png
                gene_name: LCE3A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
LCE3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
KS ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
LCE3D   10000 perm   1 sec   (7758 perm/sec)   p_kst 8.145000e-01   p_cons 2.999000e-01   p_joint 3.955000e-01

Outputting figure to mutsig2_images.part000000000095/LCE3D.2_283_10000_0.8145_0.2999_0.3955.png
                gene_name: LCE3D
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 94 percent done.
LCE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
Cons ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
LCE4A   10000 perm   1 sec   (7755 perm/sec)   p_kst 3.199000e-01   p_cons 7.000000e-03   p_joint 2.300000e-02

Joint ci ratio: 2.525733e-01	ci left: 1.039659e-02	ci right 1.344778e-02	k: 237	n:20000
Cons ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
KS ci ratio: 4.026291e-02	ci left: 3.150284e-01	ci right 3.280235e-01	k: 6430	n:20000
LCE4A   20000 perm   3 sec   (6845 perm/sec)   p_kst 3.215000e-01   p_cons 7.150000e-03   p_joint 1.185000e-02

Joint ci ratio: 2.083036e-01	ci left: 1.045075e-02	ci right 1.291184e-02	k: 349	n:30000
Cons ci ratio: 2.748756e-01	ci left: 5.808226e-03	ci right 7.689210e-03	k: 201	n:30000
KS ci ratio: 3.294625e-02	ci left: 3.152865e-01	ci right 3.258816e-01	k: 9617	n:30000
LCE4A   30000 perm   5 sec   (6451 perm/sec)   p_kst 3.205667e-01   p_cons 6.700000e-03   p_joint 1.163333e-02

Joint ci ratio: 1.837459e-01	ci left: 1.021567e-02	ci right 1.230619e-02	k: 449	n:40000
Cons ci ratio: 2.377542e-01	ci left: 5.947537e-03	ci right 7.575310e-03	k: 269	n:40000
KS ci ratio: 2.853885e-02	ci left: 3.159025e-01	ci right 3.250736e-01	k: 12819	n:40000
LCE4A   40000 perm   6 sec   (6212 perm/sec)   p_kst 3.204750e-01   p_cons 6.725000e-03   p_joint 1.122500e-02

Joint ci ratio: 2.047126e-01	ci left: 6.534589e-03	ci right 8.043464e-03	k: 363	n:50000
Cons ci ratio: 2.097031e-01	ci left: 6.212122e-03	ci right 7.685996e-03	k: 346	n:50000
KS ci ratio: 2.555643e-02	ci left: 3.158719e-01	ci right 3.240690e-01	k: 15998	n:50000
LCE4A   50000 perm   8 sec   (6031 perm/sec)   p_kst 3.199600e-01   p_cons 6.920000e-03   p_joint 7.260000e-03

Joint ci ratio: 1.440994e-01	ci left: 1.130479e-02	ci right 1.307620e-02	k: 730	n:60000
Cons ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
KS ci ratio: 2.329208e-02	ci left: 3.169325e-01	ci right 3.244182e-01	k: 19240	n:60000
LCE4A   60000 perm   10 sec   (5880 perm/sec)   p_kst 3.206667e-01   p_cons 6.950000e-03   p_joint 1.216667e-02

Joint ci ratio: 1.281740e-01	ci left: 1.233994e-02	ci right 1.404362e-02	k: 922	n:70000
Cons ci ratio: 1.771952e-01	ci left: 6.327453e-03	ci right 7.571089e-03	k: 485	n:70000
KS ci ratio: 2.157406e-02	ci left: 3.170148e-01	ci right 3.239429e-01	k: 22433	n:70000
LCE4A   70000 perm   12 sec   (5753 perm/sec)   p_kst 3.204714e-01   p_cons 6.928571e-03   p_joint 1.317143e-02

Joint ci ratio: 1.280008e-01	ci left: 1.084530e-02	ci right 1.234043e-02	k: 926	n:80000
Cons ci ratio: 1.659662e-01	ci left: 6.350054e-03	ci right 7.511137e-03	k: 553	n:80000
KS ci ratio: 2.014821e-02	ci left: 3.179397e-01	ci right 3.244233e-01	k: 25694	n:80000
LCE4A   80000 perm   14 sec   (5635 perm/sec)   p_kst 3.211750e-01   p_cons 6.912500e-03   p_joint 1.157500e-02

Joint ci ratio: 1.205562e-01	ci left: 1.091066e-02	ci right 1.232108e-02	k: 1044	n:90000
Cons ci ratio: 1.562538e-01	ci left: 6.401608e-03	ci right 7.497200e-03	k: 624	n:90000
KS ci ratio: 1.898425e-02	ci left: 3.183935e-01	ci right 3.245069e-01	k: 28930	n:90000
LCE4A   90000 perm   16 sec   (5522 perm/sec)   p_kst 3.214444e-01   p_cons 6.933333e-03   p_joint 1.160000e-02

Joint ci ratio: 1.142757e-01	ci left: 1.096497e-02	ci right 1.230358e-02	k: 1162	n:100000
Cons ci ratio: 1.487154e-01	ci left: 6.386652e-03	ci right 7.422259e-03	k: 689	n:100000
KS ci ratio: 1.799789e-02	ci left: 3.188449e-01	ci right 3.246455e-01	k: 32174	n:100000
LCE4A   100000 perm   18 sec   (5410 perm/sec)   p_kst 3.217400e-01   p_cons 6.890000e-03   p_joint 1.162000e-02

Joint ci ratio: 1.090137e-01	ci left: 1.098443e-02	ci right 1.225970e-02	k: 1277	n:110000
Cons ci ratio: 1.417006e-01	ci left: 6.419306e-03	ci right 7.406960e-03	k: 759	n:110000
KS ci ratio: 1.715228e-02	ci left: 3.191846e-01	ci right 3.247157e-01	k: 35414	n:110000
LCE4A   110000 perm   21 sec   (5305 perm/sec)   p_kst 3.219455e-01   p_cons 6.900000e-03   p_joint 1.160909e-02

Joint ci ratio: 9.837745e-02	ci left: 1.241551e-02	ci right 1.370818e-02	k: 1566	n:120000
Cons ci ratio: 1.354290e-01	ci left: 6.463580e-03	ci right 7.410484e-03	k: 831	n:120000
KS ci ratio: 1.640187e-02	ci left: 3.198388e-01	ci right 3.251364e-01	k: 38698	n:120000
LCE4A   120000 perm   23 sec   (5205 perm/sec)   p_kst 3.224833e-01   p_cons 6.925000e-03   p_joint 1.305000e-02

Joint ci ratio: 9.391955e-02	ci left: 1.260165e-02	ci right 1.385097e-02	k: 1718	n:130000
Cons ci ratio: 1.285690e-01	ci left: 6.643316e-03	ci right 7.563492e-03	k: 922	n:130000
KS ci ratio: 1.575534e-02	ci left: 3.200283e-01	ci right 3.251181e-01	k: 41934	n:130000
LCE4A   130000 perm   25 sec   (5114 perm/sec)   p_kst 3.225692e-01   p_cons 7.092308e-03   p_joint 1.321538e-02

Joint ci ratio: 9.021300e-02	ci left: 1.270645e-02	ci right 1.391383e-02	k: 1862	n:140000
Cons ci ratio: 1.234552e-01	ci left: 6.708391e-03	ci right 7.597920e-03	k: 1000	n:140000
KS ci ratio: 1.518787e-02	ci left: 3.199589e-01	ci right 3.248627e-01	k: 45137	n:140000
LCE4A   140000 perm   28 sec   (5016 perm/sec)   p_kst 3.224071e-01   p_cons 7.142857e-03   p_joint 1.330000e-02

Joint ci ratio: 8.662931e-02	ci left: 1.288293e-02	ci right 1.405599e-02	k: 2019	n:150000
Cons ci ratio: 1.184651e-01	ci left: 6.817177e-03	ci right 7.682034e-03	k: 1086	n:150000
KS ci ratio: 1.468479e-02	ci left: 3.196888e-01	ci right 3.244247e-01	k: 48308	n:150000
LCE4A   150000 perm   30 sec   (4929 perm/sec)   p_kst 3.220533e-01   p_cons 7.240000e-03   p_joint 1.346000e-02

Joint ci ratio: 8.401032e-02	ci left: 1.286067e-02	ci right 1.399456e-02	k: 2147	n:160000
Cons ci ratio: 1.146271e-01	ci left: 6.840126e-03	ci right 7.677878e-03	k: 1160	n:160000
KS ci ratio: 1.420396e-02	ci left: 3.202097e-01	ci right 3.247967e-01	k: 51600	n:160000
LCE4A   160000 perm   33 sec   (4845 perm/sec)   p_kst 3.225000e-01   p_cons 7.250000e-03   p_joint 1.341875e-02

Joint ci ratio: 8.161535e-02	ci left: 1.284151e-02	ci right 1.393989e-02	k: 2275	n:170000
Cons ci ratio: 1.115038e-01	ci left: 6.815017e-03	ci right 7.625454e-03	k: 1226	n:170000
KS ci ratio: 1.377803e-02	ci left: 3.203368e-01	ci right 3.247869e-01	k: 54835	n:170000
LCE4A   170000 perm   36 sec   (4763 perm/sec)   p_kst 3.225588e-01   p_cons 7.211765e-03   p_joint 1.338235e-02

Joint ci ratio: 9.777925e-02	ci left: 8.417059e-03	ci right 9.287759e-03	k: 1592	n:180000
Cons ci ratio: 1.084117e-01	ci left: 6.820002e-03	ci right 7.607105e-03	k: 1297	n:180000
KS ci ratio: 1.338535e-02	ci left: 3.205459e-01	ci right 3.248709e-01	k: 58087	n:180000
LCE4A   180000 perm   38 sec   (4685 perm/sec)   p_kst 3.227056e-01   p_cons 7.205556e-03   p_joint 8.844444e-03

Joint ci ratio: 1.038206e-01	ci left: 7.060550e-03	ci right 7.838802e-03	k: 1414	n:190000
Cons ci ratio: 1.063089e-01	ci left: 6.727372e-03	ci right 7.487783e-03	k: 1349	n:190000
KS ci ratio: 1.302240e-02	ci left: 3.208029e-01	ci right 3.250131e-01	k: 61352	n:190000
LCE4A   190000 perm   41 sec   (4609 perm/sec)   p_kst 3.229053e-01   p_cons 7.100000e-03   p_joint 7.442105e-03

Joint ci ratio: 1.009012e-01	ci left: 7.111908e-03	ci right 7.872471e-03	k: 1497	n:200000
Cons ci ratio: 1.031812e-01	ci left: 6.795145e-03	ci right 7.539247e-03	k: 1432	n:200000
KS ci ratio: 1.269660e-02	ci left: 3.207211e-01	ci right 3.248241e-01	k: 64554	n:200000
LCE4A   200000 perm   44 sec   (4536 perm/sec)   p_kst 3.227700e-01   p_cons 7.160000e-03   p_joint 7.485000e-03

Joint ci ratio: 9.856113e-02	ci left: 7.107550e-03	ci right 7.848999e-03	k: 1569	n:210000
Cons ci ratio: 1.007840e-01	ci left: 6.791756e-03	ci right 7.517186e-03	k: 1501	n:210000
KS ci ratio: 1.239571e-02	ci left: 3.205912e-01	ci right 3.245947e-01	k: 67744	n:210000
LCE4A   210000 perm   47 sec   (4466 perm/sec)   p_kst 3.225905e-01   p_cons 7.147619e-03   p_joint 7.471429e-03

Joint ci ratio: 9.619970e-02	ci left: 7.130394e-03	ci right 7.855400e-03	k: 1647	n:220000
Cons ci ratio: 9.810708e-02	ci left: 6.850940e-03	ci right 7.562137e-03	k: 1584	n:220000
KS ci ratio: 1.210882e-02	ci left: 3.207057e-01	ci right 3.246172e-01	k: 70985	n:220000
LCE4A   220000 perm   50 sec   (4396 perm/sec)   p_kst 3.226591e-01   p_cons 7.200000e-03   p_joint 7.486364e-03

Outputting figure to mutsig2_images.part000000000095/LCE4A.2_304_220000_0.32266_0.0072_0.0074864.png
                gene_name: LCE4A
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0072 
      ci_cons_bounds_left: 0.0069 
     ci_cons_bounds_right: 0.0076 
                  p_joint: 0.0075 
     ci_joint_bounds_left: 0.0071 
    ci_joint_bounds_right: 0.0079 

Current progress: 95 percent done.
LCMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
KS ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
LCMT1   10000 perm   1 sec   (7363 perm/sec)   p_kst 4.717000e-01   p_cons 1.225000e-01   p_joint 1.808000e-01

Joint ci ratio: 4.239620e-02	ci left: 2.930572e-01	ci right 3.058012e-01	k: 5988	n:20000
Cons ci ratio: 7.379127e-02	ci left: 1.190686e-01	ci right 1.282411e-01	k: 2472	n:20000
KS ci ratio: 2.910361e-02	ci left: 4.686577e-01	ci right 4.825494e-01	k: 9512	n:20000
LCMT1   20000 perm   3 sec   (6432 perm/sec)   p_kst 4.756000e-01   p_cons 1.236000e-01   p_joint 2.994000e-01

Outputting figure to mutsig2_images.part000000000095/LCMT1.2_1049_20000_0.4756_0.1236_0.2994.png
                gene_name: LCMT1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 97 percent done.
LCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
LCN1   10000 perm   1 sec   (8101 perm/sec)   p_kst 1.030000e-02   p_cons 9.140000e-02   p_joint 2.330000e-02

Joint ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
Cons ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
KS ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
LCN1   20000 perm   3 sec   (7088 perm/sec)   p_kst 1.115000e-02   p_cons 9.290000e-02   p_joint 5.055000e-02

Joint ci ratio: 7.992279e-02	ci left: 7.125883e-02	ci right 7.722394e-02	k: 2226	n:30000
Cons ci ratio: 7.002916e-02	ci left: 9.124537e-02	ci right 9.790005e-02	k: 2836	n:30000
KS ci ratio: 2.129699e-01	ci left: 9.976869e-03	ci right 1.238586e-02	k: 334	n:30000
LCN1   30000 perm   4 sec   (6692 perm/sec)   p_kst 1.113333e-02   p_cons 9.453333e-02   p_joint 7.420000e-02

Joint ci ratio: 6.236148e-02	ci left: 8.708957e-02	ci right 9.272013e-02	k: 3595	n:40000
Cons ci ratio: 6.057357e-02	ci left: 9.189692e-02	ci right 9.766206e-02	k: 3790	n:40000
KS ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
LCN1   40000 perm   6 sec   (6457 perm/sec)   p_kst 1.157500e-02   p_cons 9.475000e-02   p_joint 8.987500e-02

Joint ci ratio: 4.987017e-02	ci left: 1.072306e-01	ci right 1.127348e-01	k: 5498	n:50000
Cons ci ratio: 5.439937e-02	ci left: 9.151494e-02	ci right 9.665230e-02	k: 4703	n:50000
KS ci ratio: 1.628177e-01	ci left: 1.052632e-02	ci right 1.241104e-02	k: 572	n:50000
LCN1   50000 perm   8 sec   (6265 perm/sec)   p_kst 1.144000e-02   p_cons 9.406000e-02   p_joint 1.099600e-01

Joint ci ratio: 4.626416e-02	ci left: 1.043889e-01	ci right 1.093492e-01	k: 6411	n:60000
Cons ci ratio: 4.958118e-02	ci left: 9.200588e-02	ci right 9.670011e-02	k: 5660	n:60000
KS ci ratio: 1.478292e-01	ci left: 1.072646e-02	ci right 1.245460e-02	k: 694	n:60000
LCN1   60000 perm   10 sec   (6090 perm/sec)   p_kst 1.156667e-02   p_cons 9.433333e-02   p_joint 1.068500e-01

Joint ci ratio: 4.685527e-02	ci left: 8.876616e-02	ci right 9.303925e-02	k: 6362	n:70000
Cons ci ratio: 4.222700e-02	ci left: 1.072949e-01	ci right 1.119375e-01	k: 7672	n:70000
KS ci ratio: 1.353377e-01	ci left: 1.104081e-02	ci right 1.265718e-02	k: 828	n:70000
LCN1   70000 perm   12 sec   (5940 perm/sec)   p_kst 1.182857e-02   p_cons 1.096000e-01   p_joint 9.088571e-02

Joint ci ratio: 4.895927e-02	ci left: 7.236830e-02	ci right 7.601266e-02	k: 5934	n:80000
Cons ci ratio: 3.943450e-02	ci left: 1.077654e-01	ci right 1.121129e-01	k: 8794	n:80000
KS ci ratio: 1.268294e-01	ci left: 1.105110e-02	ci right 1.255961e-02	k: 943	n:80000
LCN1   80000 perm   14 sec   (5806 perm/sec)   p_kst 1.178750e-02   p_cons 1.099250e-01   p_joint 7.417500e-02

Joint ci ratio: 4.402256e-02	ci left: 7.918148e-02	ci right 8.275669e-02	k: 7286	n:90000
Cons ci ratio: 3.713154e-02	ci left: 1.081392e-01	ci right 1.122415e-01	k: 9916	n:90000
KS ci ratio: 1.195760e-01	ci left: 1.109394e-02	ci right 1.251556e-02	k: 1061	n:90000
LCN1   90000 perm   16 sec   (5680 perm/sec)   p_kst 1.178889e-02   p_cons 1.101778e-01   p_joint 8.095556e-02

Joint ci ratio: 3.936417e-02	ci left: 8.844130e-02	ci right 9.200251e-02	k: 9021	n:100000
Cons ci ratio: 3.520614e-02	ci left: 1.083548e-01	ci right 1.122478e-01	k: 11029	n:100000
KS ci ratio: 1.145751e-01	ci left: 1.090667e-02	ci right 1.224188e-02	k: 1156	n:100000
LCN1   100000 perm   18 sec   (5560 perm/sec)   p_kst 1.156000e-02   p_cons 1.102900e-01   p_joint 9.021000e-02

Joint ci ratio: 7.801608e-02	ci left: 2.156032e-02	ci right 2.331953e-02	k: 2467	n:110000
Cons ci ratio: 3.352429e-02	ci left: 1.086982e-01	ci right 1.124133e-01	k: 12160	n:110000
KS ci ratio: 1.101975e-01	ci left: 1.074563e-02	ci right 1.200760e-02	k: 1250	n:110000
LCN1   110000 perm   20 sec   (5448 perm/sec)   p_kst 1.136364e-02   p_cons 1.105455e-01   p_joint 2.242727e-02

Joint ci ratio: 6.249921e-02	ci left: 3.074872e-02	ci right 3.274066e-02	k: 3808	n:120000
Cons ci ratio: 3.206250e-02	ci left: 1.089879e-01	ci right 1.125476e-01	k: 13291	n:120000
KS ci ratio: 1.052229e-01	ci left: 1.083136e-02	ci right 1.204242e-02	k: 1371	n:120000
LCN1   120000 perm   22 sec   (5337 perm/sec)   p_kst 1.142500e-02   p_cons 1.107583e-01   p_joint 3.173333e-02

Joint ci ratio: 6.843802e-02	ci left: 2.377229e-02	ci right 2.546439e-02	k: 3199	n:130000
Cons ci ratio: 3.084643e-02	ci left: 1.087930e-01	ci right 1.122090e-01	k: 14364	n:130000
KS ci ratio: 1.015218e-01	ci left: 1.076249e-02	ci right 1.192100e-02	k: 1473	n:130000
LCN1   130000 perm   25 sec   (5237 perm/sec)   p_kst 1.133077e-02   p_cons 1.104923e-01   p_joint 2.460769e-02

Joint ci ratio: 6.941538e-02	ci left: 2.149776e-02	ci right 2.305068e-02	k: 3117	n:140000
Cons ci ratio: 2.977308e-02	ci left: 1.085358e-01	ci right 1.118232e-01	k: 15424	n:140000
KS ci ratio: 9.828032e-02	ci left: 1.068320e-02	ci right 1.179433e-02	k: 1572	n:140000
LCN1   140000 perm   27 sec   (5143 perm/sec)   p_kst 1.122857e-02   p_cons 1.101714e-01   p_joint 2.226429e-02

Outputting figure to mutsig2_images.part000000000095/LCN1.2_555_140000_0.011229_0.11017_0.022264.png
                gene_name: LCN1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 98 percent done.
LCN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.929411e-02	ci left: 7.970962e-01	ci right 8.127257e-01	k: 8050	n:10000
Cons ci ratio: 1.701452e-02	ci left: 8.341928e-01	ci right 8.486078e-01	k: 8415	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
LCN9   10000 perm   1 sec   (8024 perm/sec)   p_kst 6.725000e-01   p_cons 8.415000e-01   p_joint 8.050000e-01

Outputting figure to mutsig2_images.part000000000095/LCN9.2_548_10000_0.6725_0.8415_0.805.png
                gene_name: LCN9
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000095
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 95 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 4422134: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000096> was used as the working directory.
Started at Wed Oct 24 17:58:15 2012
Results reported at Wed Oct 24 18:09:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000096.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000096.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 96  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000096.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    755.95 sec.
    Max Memory :      5311 MB
    Max Swap   :      7660 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
96
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 96
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 96: processing genes 8596 - 8685
Calculating significance of each gene.
Using projection method.
8596	LDHA	1.711523e-01
8597	LDHAL6A	6.196555e-01
8598	LDHAL6B	1
8599	LDHB	7.238606e-01
8600	LDHC	7.712510e-01
8601	LDHD	7.492922e-01
8602	LDLR	7.407504e-01
8603	LDLRAD1	1
8604	LDLRAD2	4.537619e-01
8605	LDLRAD3	1
8606	LDLRAP1	4.329753e-01
8607	LDOC1	1
8608	LDOC1L	7.653032e-01
8609	LEAP2	1
8610	LECT1	3.116191e-01
8611	LECT2	5.923278e-01
8612	LEF1	4.604102e-02
8613	LEFTY1	7.121541e-01
8614	LEFTY2	3.662998e-01
8615	LEKR1	3.413116e-01
8616	LELP1	2.222307e-02
8617	LEMD1	1.490027e-01
8618	LEMD2	1
8619	LEMD3	7.527093e-01
8620	LENEP	1
8621	LENG1	4.868626e-01
8622	LENG8	9.010984e-01
8623	LENG9	1
8624	LEO1	5.693734e-01
8625	LEP	6.405487e-01
8626	LEPR	1.242621e-02
8627	LEPRE1	9.229091e-01
8628	LEPREL1	1
8629	LEPREL2	5.964027e-01
8630	LEPROT	4.126504e-01
8631	LEPROTL1	1
8632	LETM1	1
8633	LETM2	1
8634	LETMD1	4.621892e-01
8635	LFNG	8.556114e-01
8636	LGALS1	1
8637	LGALS12	1
8638	LGALS13	1.179103e-01
8639	LGALS14	1
8640	LGALS2	1.344556e-01
8641	LGALS3	1
8642	LGALS3BP	8.896542e-01
8643	LGALS4	7.633877e-01
8644	LGALS7	1
8645	LGALS7B	1
8646	LGALS8	1
8647	LGALS9	3.079782e-02
8648	LGALS9B	3.090277e-02
8649	LGALS9C	8.383662e-01
8650	LGI1	6.812607e-01
8651	LGI2	1.400599e-01
8652	LGI3	5.236362e-01
8653	LGI4	1
8654	LGMN	5.287360e-01
8655	LGR4	8.899438e-01
8656	LGR5	8.127504e-01
8657	LGR6	4.207810e-02
8658	LGSN	1
8659	LGTN	1
8660	LHB	3.609362e-01
8661	LHCGR	4.555667e-01
8662	LHFP	2.976288e-01
8663	LHFPL1	9.869084e-02
8664	LHFPL2	1
8665	LHFPL3	1.746785e-01
8666	LHFPL4	4.540629e-01
8667	LHFPL5	1
8668	LHPP	4.567503e-01
8669	LHX1	1
8670	LHX2	1
8671	LHX3	6.631640e-01
8672	LHX4	8.392716e-01
8673	LHX5	5.883623e-01
8674	LHX6	1
8675	LHX8	4.646576e-01
8676	LHX9	1
8677	LIAS	9.113815e-01
8678	LIF	2.529151e-01
8679	LIFR	1
8680	LIG1	1.281214e-01
8681	LIG3	9.962432e-01
8682	LIG4	9.807695e-01
8683	LILRA1	9.311276e-01
8684	LILRA2	2.813442e-01
8685	LILRA3	1
Done

Running MutSig 2:
Scatter job 96: processing genes 8596 - 8685
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LGR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
Cons ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
KS ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
LGR5   10000 perm   2 sec   (4009 perm/sec)   p_kst 5.744000e-01   p_cons 5.675000e-01   p_joint 8.551000e-01

Outputting figure to mutsig2_images.part000000000096/LGR5.15_2796_10000_0.5744_0.5675_0.8551.png
                gene_name: LGR5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 2 percent done.
LEPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
Cons ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
KS ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
LEPR   10000 perm   2 sec   (4273 perm/sec)   p_kst 1.931000e-01   p_cons 2.352000e-01   p_joint 2.163000e-01

Outputting figure to mutsig2_images.part000000000096/LEPR.13_3800_10000_0.1931_0.2352_0.2163.png
                gene_name: LEPR
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 3 percent done.
LGR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
Cons ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
LGR6   10000 perm   2 sec   (4507 perm/sec)   p_kst 4.675000e-01   p_cons 1.480000e-02   p_joint 6.240000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
KS ci ratio: 2.951221e-02	ci left: 4.617141e-01	ci right 4.755950e-01	k: 9373	n:20000
LGR6   20000 perm   5 sec   (4077 perm/sec)   p_kst 4.686500e-01   p_cons 1.465000e-02   p_joint 5.605000e-02

Joint ci ratio: 1.014577e-01	ci left: 4.499019e-02	ci right 4.983127e-02	k: 1421	n:30000
Cons ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
KS ci ratio: 2.423561e-02	ci left: 4.601422e-01	ci right 4.714644e-01	k: 13974	n:30000
LGR6   30000 perm   8 sec   (3901 perm/sec)   p_kst 4.658000e-01   p_cons 1.306667e-02   p_joint 4.736667e-02

Joint ci ratio: 9.352007e-02	ci left: 4.010395e-02	ci right 4.406287e-02	k: 1682	n:40000
Cons ci ratio: 1.634516e-01	ci left: 1.301542e-02	ci right 1.535588e-02	k: 566	n:40000
KS ci ratio: 2.101743e-02	ci left: 4.602272e-01	ci right 4.700279e-01	k: 18605	n:40000
LGR6   40000 perm   11 sec   (3795 perm/sec)   p_kst 4.651250e-01   p_cons 1.415000e-02   p_joint 4.205000e-02

Joint ci ratio: 7.552790e-02	ci left: 4.918599e-02	ci right 5.306634e-02	k: 2555	n:50000
Cons ci ratio: 1.427370e-01	ci left: 1.379841e-02	ci right 1.593845e-02	k: 742	n:50000
KS ci ratio: 1.889210e-02	ci left: 4.582819e-01	ci right 4.670424e-01	k: 23133	n:50000
LGR6   50000 perm   13 sec   (3709 perm/sec)   p_kst 4.626600e-01   p_cons 1.484000e-02   p_joint 5.110000e-02

Joint ci ratio: 6.731171e-02	ci left: 5.169633e-02	ci right 5.531368e-02	k: 3209	n:60000
Cons ci ratio: 1.307929e-01	ci left: 1.378448e-02	ci right 1.572954e-02	k: 884	n:60000
KS ci ratio: 1.645800e-02	ci left: 4.819766e-01	ci right 4.899915e-01	k: 29159	n:60000
LGR6   60000 perm   16 sec   (3637 perm/sec)   p_kst 4.859833e-01   p_cons 1.473333e-02   p_joint 5.348333e-02

Joint ci ratio: 6.339902e-02	ci left: 5.014154e-02	ci right 5.343859e-02	k: 3624	n:70000
Cons ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
KS ci ratio: 1.561367e-02	ci left: 4.700951e-01	ci right 4.775071e-01	k: 33166	n:70000
LGR6   70000 perm   20 sec   (3574 perm/sec)   p_kst 4.738000e-01   p_cons 1.458571e-02   p_joint 5.177143e-02

Joint ci ratio: 5.132910e-02	ci left: 6.620321e-02	ci right 6.970321e-02	k: 5435	n:80000
Cons ci ratio: 1.044158e-01	ci left: 1.640777e-02	ci right 1.822748e-02	k: 1384	n:80000
KS ci ratio: 1.476293e-02	ci left: 4.649871e-01	ci right 4.719152e-01	k: 37476	n:80000
LGR6   80000 perm   23 sec   (3515 perm/sec)   p_kst 4.684500e-01   p_cons 1.730000e-02   p_joint 6.793750e-02

Joint ci ratio: 4.961677e-02	ci left: 6.324412e-02	ci right 6.647288e-02	k: 5836	n:90000
Cons ci ratio: 9.816014e-02	ci left: 1.655577e-02	ci right 1.827554e-02	k: 1566	n:90000
KS ci ratio: 1.391292e-02	ci left: 4.653909e-01	ci right 4.719223e-01	k: 42179	n:90000
LGR6   90000 perm   26 sec   (3456 perm/sec)   p_kst 4.686556e-01   p_cons 1.740000e-02   p_joint 6.484444e-02

Outputting figure to mutsig2_images.part000000000096/LGR6.11_3123_90000_0.46866_0.0174_0.064844.png
                gene_name: LGR6
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.066 

Current progress: 5 percent done.
LILRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
Cons ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
KS ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
LILRA1   10000 perm   2 sec   (4913 perm/sec)   p_kst 4.464000e-01   p_cons 3.712000e-01   p_joint 6.015000e-01

Outputting figure to mutsig2_images.part000000000096/LILRA1.11_1506_10000_0.4464_0.3712_0.6015.png
                gene_name: LILRA1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 7 percent done.
LIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682928e-02	ci left: 8.371455e-01	ci right 8.514533e-01	k: 8444	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
LIG1   10000 perm   2 sec   (4381 perm/sec)   p_kst 7.059000e-01   p_cons 9.006000e-01   p_joint 8.444000e-01

Outputting figure to mutsig2_images.part000000000096/LIG1.10_2868_10000_0.7059_0.9006_0.8444.png
                gene_name: LIG1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 9 percent done.
LILRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
LILRA2   10000 perm   2 sec   (5074 perm/sec)   p_kst 1.447000e-01   p_cons 4.587000e-01   p_joint 2.322000e-01

Outputting figure to mutsig2_images.part000000000096/LILRA2.9_1484_10000_0.1447_0.4587_0.2322.png
                gene_name: LILRA2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 10 percent done.
LEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
KS ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
LEF1   10000 perm   2 sec   (5367 perm/sec)   p_kst 9.131000e-01   p_cons 9.871000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LEF1.8_1341_10000_0.9131_0.9871_1.png
                gene_name: LEF1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
LGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
KS ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
LGI2   10000 perm   2 sec   (5024 perm/sec)   p_kst 5.380000e-02   p_cons 4.605000e-01   p_joint 9.950000e-02

Joint ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
Cons ci ratio: 3.025749e-02	ci left: 4.493288e-01	ci right 4.631839e-01	k: 9125	n:20000
KS ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
LGI2   20000 perm   4 sec   (4482 perm/sec)   p_kst 5.405000e-02   p_cons 4.562500e-01   p_joint 6.755000e-02

Joint ci ratio: 6.628674e-02	ci left: 1.009288e-01	ci right 1.078814e-01	k: 3131	n:30000
Cons ci ratio: 2.469172e-02	ci left: 4.508846e-01	ci right 4.621905e-01	k: 13696	n:30000
KS ci ratio: 9.598481e-02	ci left: 5.013325e-02	ci right 5.522049e-02	k: 1579	n:30000
LGI2   30000 perm   7 sec   (4275 perm/sec)   p_kst 5.263333e-02   p_cons 4.565333e-01   p_joint 1.043667e-01

Outputting figure to mutsig2_images.part000000000096/LGI2.8_1670_30000_0.052633_0.45653_0.10437.png
                gene_name: LGI2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 14 percent done.
LGALS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
Cons ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
KS ci ratio: 2.635936e-02	ci left: 6.794201e-01	ci right 6.976699e-01	k: 6886	n:10000
LGALS9   10000 perm   2 sec   (5701 perm/sec)   p_kst 6.886000e-01   p_cons 2.305000e-01   p_joint 5.051000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS9.6_1112_10000_0.6886_0.2305_0.5051.png
                gene_name: LGALS9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 16 percent done.
LHCGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305600e-02	ci left: 8.941583e-01	ci right 9.060075e-01	k: 9002	n:10000
Cons ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
KS ci ratio: 3.503973e-02	ci left: 5.459963e-01	ci right 5.655712e-01	k: 5558	n:10000
LHCGR   10000 perm   2 sec   (5038 perm/sec)   p_kst 5.558000e-01   p_cons 6.010000e-01   p_joint 9.002000e-01

Outputting figure to mutsig2_images.part000000000096/LHCGR.6_2144_10000_0.5558_0.601_0.9002.png
                gene_name: LHCGR
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 17 percent done.
LHX8
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
KS ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
LHX8   10000 perm   2 sec   (5605 perm/sec)   p_kst 8.757000e-01   p_cons 7.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LHX8.5_1107_10000_0.8757_0.7966_1.png
                gene_name: LHX8
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
LDHC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
Cons ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
KS ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
LDHC   10000 perm   2 sec   (6004 perm/sec)   p_kst 3.148000e-01   p_cons 2.915000e-01   p_joint 4.692000e-01

Outputting figure to mutsig2_images.part000000000096/LDHC.5_1027_10000_0.3148_0.2915_0.4692.png
                gene_name: LDHC
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 21 percent done.
LDLRAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
KS ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
LDLRAD3   10000 perm   2 sec   (6059 perm/sec)   p_kst 4.594000e-01   p_cons 3.490000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000096/LDLRAD3.5_1062_10000_0.4594_0.349_0.6353.png
                gene_name: LDLRAD3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 22 percent done.
LGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
Cons ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
KS ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
LGI1   10000 perm   2 sec   (5606 perm/sec)   p_kst 6.125000e-01   p_cons 4.738000e-01   p_joint 6.413000e-01

Outputting figure to mutsig2_images.part000000000096/LGI1.5_1706_10000_0.6125_0.4738_0.6413.png
                gene_name: LGI1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 24 percent done.
LIFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
Cons ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
KS ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
LIFR   10000 perm   2 sec   (4808 perm/sec)   p_kst 6.815000e-01   p_cons 3.296000e-01   p_joint 5.956000e-01

Outputting figure to mutsig2_images.part000000000096/LIFR.5_3370_10000_0.6815_0.3296_0.5956.png
                gene_name: LIFR
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 26 percent done.
LIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
Cons ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
KS ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
LIG4   10000 perm   2 sec   (4920 perm/sec)   p_kst 3.449000e-01   p_cons 1.861000e-01   p_joint 3.242000e-01

Outputting figure to mutsig2_images.part000000000096/LIG4.5_2740_10000_0.3449_0.1861_0.3242.png
                gene_name: LIG4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 28 percent done.
LDLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
Cons ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
KS ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
LDLR   10000 perm   2 sec   (5158 perm/sec)   p_kst 5.160000e-01   p_cons 8.370000e-01   p_joint 6.318000e-01

Outputting figure to mutsig2_images.part000000000096/LDLR.4_2655_10000_0.516_0.837_0.6318.png
                gene_name: LDLR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 29 percent done.
LECT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
Cons ci ratio: 2.632250e-02	ci left: 6.800247e-01	ci right 6.982650e-01	k: 6892	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
LECT1   10000 perm   2 sec   (6098 perm/sec)   p_kst 2.372000e-01   p_cons 6.892000e-01   p_joint 3.488000e-01

Outputting figure to mutsig2_images.part000000000096/LECT1.4_1033_10000_0.2372_0.6892_0.3488.png
                gene_name: LECT1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
LEO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
Cons ci ratio: 1.933710e-02	ci left: 7.963859e-01	ci right 8.120365e-01	k: 8043	n:10000
KS ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
LEO1   10000 perm   2 sec   (5756 perm/sec)   p_kst 4.196000e-01   p_cons 8.043000e-01   p_joint 5.436000e-01

Outputting figure to mutsig2_images.part000000000096/LEO1.4_2049_10000_0.4196_0.8043_0.5436.png
                gene_name: LEO1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 33 percent done.
LEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
Cons ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
KS ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
LEP   10000 perm   2 sec   (6418 perm/sec)   p_kst 2.860000e-02   p_cons 1.135000e-01   p_joint 7.320000e-02

Joint ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
Cons ci ratio: 7.990779e-02	ci left: 1.030921e-01	ci right 1.117224e-01	k: 2147	n:20000
KS ci ratio: 1.642181e-01	ci left: 2.542143e-02	ci right 3.001725e-02	k: 553	n:20000
LEP   20000 perm   4 sec   (5610 perm/sec)   p_kst 2.765000e-02   p_cons 1.073500e-01   p_joint 2.750000e-02

Joint ci ratio: 1.010481e-01	ci left: 4.534800e-02	ci right 5.020672e-02	k: 1432	n:30000
Cons ci ratio: 6.578364e-02	ci left: 1.023411e-01	ci right 1.093355e-01	k: 3174	n:30000
KS ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
LEP   30000 perm   6 sec   (5323 perm/sec)   p_kst 2.866667e-02   p_cons 1.058000e-01   p_joint 4.773333e-02

Joint ci ratio: 1.405518e-01	ci left: 1.773286e-02	ci right 2.043760e-02	k: 762	n:40000
Cons ci ratio: 5.696547e-02	ci left: 1.028266e-01	ci right 1.088807e-01	k: 4233	n:40000
KS ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
LEP   40000 perm   8 sec   (5129 perm/sec)   p_kst 2.922500e-02   p_cons 1.058250e-01   p_joint 1.905000e-02

Joint ci ratio: 1.051977e-01	ci left: 2.559682e-02	ci right 2.845845e-02	k: 1350	n:50000
Cons ci ratio: 5.117080e-02	ci left: 1.023457e-01	ci right 1.077402e-01	k: 5251	n:50000
KS ci ratio: 9.999294e-02	ci left: 2.832695e-02	ci right 3.132797e-02	k: 1490	n:50000
LEP   50000 perm   10 sec   (4961 perm/sec)   p_kst 2.980000e-02   p_cons 1.050200e-01   p_joint 2.700000e-02

Joint ci ratio: 1.056412e-01	ci left: 2.124698e-02	ci right 2.363286e-02	k: 1345	n:60000
Cons ci ratio: 4.673062e-02	ci left: 1.025084e-01	ci right 1.074298e-01	k: 6297	n:60000
KS ci ratio: 9.107637e-02	ci left: 2.858429e-02	ci right 3.132810e-02	k: 1796	n:60000
LEP   60000 perm   12 sec   (4825 perm/sec)   p_kst 2.993333e-02   p_cons 1.049500e-01   p_joint 2.241667e-02

Joint ci ratio: 9.488881e-02	ci left: 2.266951e-02	ci right 2.494163e-02	k: 1665	n:70000
Cons ci ratio: 4.335544e-02	ci left: 1.022997e-01	ci right 1.068474e-01	k: 7319	n:70000
KS ci ratio: 8.441386e-02	ci left: 2.862273e-02	ci right 3.115930e-02	k: 2091	n:70000
LEP   70000 perm   15 sec   (4708 perm/sec)   p_kst 2.987143e-02   p_cons 1.045571e-01   p_joint 2.378571e-02

Outputting figure to mutsig2_images.part000000000096/LEP.4_512_70000_0.029871_0.10456_0.023786.png
                gene_name: LEP
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 34 percent done.
LEPRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
Cons ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
KS ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
LEPRE1   10000 perm   2 sec   (5383 perm/sec)   p_kst 5.265000e-01   p_cons 1.958000e-01   p_joint 5.172000e-01

Outputting figure to mutsig2_images.part000000000096/LEPRE1.4_2290_10000_0.5265_0.1958_0.5172.png
                gene_name: LEPRE1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 36 percent done.
LGALS9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
Cons ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
KS ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
LGALS9B   10000 perm   2 sec   (6393 perm/sec)   p_kst 5.520000e-02   p_cons 6.721000e-01   p_joint 1.528000e-01

Joint ci ratio: 6.139857e-02	ci left: 1.640766e-01	ci right 1.745197e-01	k: 3385	n:20000
Cons ci ratio: 1.913002e-02	ci left: 6.708206e-01	ci right 6.838278e-01	k: 13547	n:20000
KS ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
LGALS9B   20000 perm   4 sec   (5633 perm/sec)   p_kst 5.595000e-02   p_cons 6.773500e-01   p_joint 1.692500e-01

Joint ci ratio: 5.221928e-02	ci left: 1.539882e-01	ci right 1.622782e-01	k: 4743	n:30000
Cons ci ratio: 1.564300e-02	ci left: 6.713736e-01	ci right 6.819922e-01	k: 20301	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
LGALS9B   30000 perm   6 sec   (5330 perm/sec)   p_kst 5.576667e-02   p_cons 6.767000e-01   p_joint 1.581000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS9B.4_1112_30000_0.055767_0.6767_0.1581.png
                gene_name: LGALS9B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 38 percent done.
LGMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
Cons ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
KS ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
LGMN   10000 perm   2 sec   (5690 perm/sec)   p_kst 7.992000e-01   p_cons 2.414000e-01   p_joint 6.953000e-01

Outputting figure to mutsig2_images.part000000000096/LGMN.4_1354_10000_0.7992_0.2414_0.6953.png
                gene_name: LGMN
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 40 percent done.
LGR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
KS ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
LGR4   10000 perm   2 sec   (5298 perm/sec)   p_kst 4.941000e-01   p_cons 3.622000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000096/LGR4.4_2928_10000_0.4941_0.3622_0.647.png
                gene_name: LGR4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 41 percent done.
LHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
Cons ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
KS ci ratio: 1.419628e-02	ci left: 8.776639e-01	ci right 8.903114e-01	k: 8841	n:10000
LHX9   10000 perm   2 sec   (5955 perm/sec)   p_kst 8.841000e-01   p_cons 2.703000e-01   p_joint 7.745000e-01

Outputting figure to mutsig2_images.part000000000096/LHX9.4_1246_10000_0.8841_0.2703_0.7745.png
                gene_name: LHX9
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 43 percent done.
LDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
Cons ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
KS ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
LDHA   10000 perm   2 sec   (6127 perm/sec)   p_kst 2.519000e-01   p_cons 3.135000e-01   p_joint 5.933000e-01

Outputting figure to mutsig2_images.part000000000096/LDHA.3_1213_10000_0.2519_0.3135_0.5933.png
                gene_name: LDHA
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 45 percent done.
LDHAL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
Cons ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
KS ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
LDHAL6A   10000 perm   1 sec   (7094 perm/sec)   p_kst 7.556000e-01   p_cons 1.110000e-01   p_joint 3.592000e-01

Joint ci ratio: 4.370508e-02	ci left: 2.805384e-01	ci right 2.931237e-01	k: 5736	n:20000
Cons ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
KS ci ratio: 1.548251e-02	ci left: 7.562368e-01	ci right 7.680868e-01	k: 15244	n:20000
LDHAL6A   20000 perm   3 sec   (6174 perm/sec)   p_kst 7.622000e-01   p_cons 1.107500e-01   p_joint 2.868000e-01

Outputting figure to mutsig2_images.part000000000096/LDHAL6A.3_1027_20000_0.7622_0.11075_0.2868.png
                gene_name: LDHAL6A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 47 percent done.
LEFTY1
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 48 percent done.
LEFTY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.355655e-03	ci left: 9.951357e-01	ci right 9.975609e-01	k: 9965	n:10000
KS ci ratio: 9.527085e-03	ci left: 9.396240e-01	ci right 9.487151e-01	k: 9443	n:10000
LEFTY2   10000 perm   2 sec   (6462 perm/sec)   p_kst 9.443000e-01   p_cons 9.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LEFTY2.3_1117_10000_0.9443_0.9965_1.png
                gene_name: LEFTY2
               theta_stop: 0.0095 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
LEKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
Cons ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
KS ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
LEKR1   10000 perm   2 sec   (5858 perm/sec)   p_kst 4.412000e-01   p_cons 1.860000e-01   p_joint 3.687000e-01

Outputting figure to mutsig2_images.part000000000096/LEKR1.3_2127_10000_0.4412_0.186_0.3687.png
                gene_name: LEKR1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 52 percent done.
LELP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
Cons ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
LELP1   10000 perm   1 sec   (6761 perm/sec)   p_kst 2.590000e-02   p_cons 4.800000e-01   p_joint 1.521000e-01

Joint ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
Cons ci ratio: 2.879619e-02	ci left: 4.739537e-01	ci right 4.878518e-01	k: 9618	n:20000
KS ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
LELP1   20000 perm   3 sec   (5897 perm/sec)   p_kst 2.515000e-02   p_cons 4.809000e-01   p_joint 2.700000e-02

Joint ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
Cons ci ratio: 2.343895e-02	ci left: 4.767975e-01	ci right 4.881393e-01	k: 14474	n:30000
KS ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
LELP1   30000 perm   5 sec   (5501 perm/sec)   p_kst 2.530000e-02   p_cons 4.824667e-01   p_joint 4.183333e-02

Joint ci ratio: 1.134127e-01	ci left: 2.735298e-02	ci right 3.066587e-02	k: 1159	n:40000
Cons ci ratio: 2.030780e-02	ci left: 4.773421e-01	ci right 4.871605e-01	k: 19290	n:40000
KS ci ratio: 1.237396e-01	ci left: 2.295860e-02	ci right 2.601097e-02	k: 978	n:40000
LELP1   40000 perm   8 sec   (5299 perm/sec)   p_kst 2.445000e-02   p_cons 4.822500e-01   p_joint 2.897500e-02

Joint ci ratio: 8.744229e-02	ci left: 3.694788e-02	ci right 4.034595e-02	k: 1931	n:50000
Cons ci ratio: 1.738292e-02	ci left: 4.998274e-01	ci right 5.086121e-01	k: 25211	n:50000
KS ci ratio: 1.104798e-01	ci left: 2.320152e-02	ci right 2.593406e-02	k: 1227	n:50000
LELP1   50000 perm   10 sec   (5128 perm/sec)   p_kst 2.454000e-02   p_cons 5.042200e-01   p_joint 3.862000e-02

Joint ci ratio: 9.254666e-02	ci left: 2.768807e-02	ci right 3.039107e-02	k: 1741	n:60000
Cons ci ratio: 1.584159e-02	ci left: 5.010576e-01	ci right 5.090752e-01	k: 30304	n:60000
KS ci ratio: 1.008400e-01	ci left: 2.332648e-02	ci right 2.581980e-02	k: 1473	n:60000
LELP1   60000 perm   12 sec   (5007 perm/sec)   p_kst 2.455000e-02   p_cons 5.050667e-01   p_joint 2.901667e-02

Joint ci ratio: 5.263649e-02	ci left: 7.147863e-02	ci right 7.535682e-02	k: 5138	n:70000
Cons ci ratio: 1.467560e-02	ci left: 5.010461e-01	ci right 5.084678e-01	k: 35333	n:70000
KS ci ratio: 8.972608e-02	ci left: 2.535062e-02	ci right 2.774599e-02	k: 1857	n:70000
LELP1   70000 perm   14 sec   (4887 perm/sec)   p_kst 2.652857e-02   p_cons 5.047571e-01   p_joint 7.340000e-02

Outputting figure to mutsig2_images.part000000000096/LELP1.3_301_70000_0.026529_0.50476_0.0734.png
                gene_name: LELP1
               theta_stop: 0.090 
                    nperm: 70000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 53 percent done.
LEMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
Cons ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
KS ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
LEMD3   10000 perm   2 sec   (5322 perm/sec)   p_kst 5.096000e-01   p_cons 2.253000e-01   p_joint 5.186000e-01

Outputting figure to mutsig2_images.part000000000096/LEMD3.3_2788_10000_0.5096_0.2253_0.5186.png
                gene_name: LEMD3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 55 percent done.
LENG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
KS ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
LENG8   10000 perm   2 sec   (5551 perm/sec)   p_kst 6.816000e-01   p_cons 9.688000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LENG8.3_2463_10000_0.6816_0.9688_1.png
                gene_name: LENG8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
LEPREL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
LEPREL2   10000 perm   2 sec   (5613 perm/sec)   p_kst 5.058000e-01   p_cons 6.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LEPREL2.3_2270_10000_0.5058_0.6938_1.png
                gene_name: LEPREL2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
LETMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
Cons ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
KS ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
LETMD1   10000 perm   2 sec   (6559 perm/sec)   p_kst 7.600000e-03   p_cons 5.713000e-01   p_joint 3.960000e-02

Joint ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
Cons ci ratio: 2.422867e-02	ci left: 5.599484e-01	ci right 5.737322e-01	k: 11337	n:20000
KS ci ratio: 3.243481e-01	ci left: 6.075351e-03	ci right 8.471257e-03	k: 144	n:20000
LETMD1   20000 perm   3 sec   (5716 perm/sec)   p_kst 7.200000e-03   p_cons 5.668500e-01   p_joint 3.020000e-02

Joint ci ratio: 1.143414e-01	ci left: 3.554046e-02	ci right 3.988299e-02	k: 1130	n:30000
Cons ci ratio: 1.989404e-02	ci left: 5.584661e-01	ci right 5.697215e-01	k: 16923	n:30000
KS ci ratio: 2.633112e-01	ci left: 6.367997e-03	ci right 8.329228e-03	k: 219	n:30000
LETMD1   30000 perm   6 sec   (5412 perm/sec)   p_kst 7.300000e-03   p_cons 5.641000e-01   p_joint 3.766667e-02

Joint ci ratio: 1.253233e-01	ci left: 2.237687e-02	ci right 2.539280e-02	k: 954	n:40000
Cons ci ratio: 1.712668e-02	ci left: 5.621521e-01	ci right 5.718882e-01	k: 22681	n:40000
KS ci ratio: 2.224984e-01	ci left: 6.843160e-03	ci right 8.579455e-03	k: 307	n:40000
LETMD1   40000 perm   8 sec   (5200 perm/sec)   p_kst 7.675000e-03   p_cons 5.670250e-01   p_joint 2.385000e-02

Joint ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
Cons ci ratio: 1.582988e-02	ci left: 5.464673e-01	ci right 5.552068e-01	k: 27542	n:50000
KS ci ratio: 2.013950e-01	ci left: 6.762465e-03	ci right 8.295544e-03	k: 375	n:50000
LETMD1   50000 perm   10 sec   (5033 perm/sec)   p_kst 7.500000e-03   p_cons 5.508400e-01   p_joint 3.152000e-02

Joint ci ratio: 8.806504e-02	ci left: 3.055714e-02	ci right 3.338837e-02	k: 1917	n:60000
Cons ci ratio: 1.442560e-02	ci left: 5.477099e-01	ci right 5.556851e-01	k: 33102	n:60000
KS ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
LETMD1   60000 perm   12 sec   (4895 perm/sec)   p_kst 7.700000e-03   p_cons 5.517000e-01   p_joint 3.195000e-02

Joint ci ratio: 9.586592e-02	ci left: 2.220907e-02	ci right 2.445925e-02	k: 1632	n:70000
Cons ci ratio: 1.338644e-02	ci left: 5.468630e-01	ci right 5.542471e-01	k: 38539	n:70000
KS ci ratio: 1.672582e-01	ci left: 7.134242e-03	ci right 8.449908e-03	k: 544	n:70000
LETMD1   70000 perm   15 sec   (4773 perm/sec)   p_kst 7.771429e-03   p_cons 5.505571e-01   p_joint 2.331429e-02

Joint ci ratio: 8.615393e-02	ci left: 2.413715e-02	ci right 2.632246e-02	k: 2017	n:80000
Cons ci ratio: 1.248354e-02	ci left: 5.486210e-01	ci right 5.555252e-01	k: 44166	n:80000
KS ci ratio: 1.577186e-01	ci left: 7.057896e-03	ci right 8.278215e-03	k: 612	n:80000
LETMD1   80000 perm   17 sec   (4662 perm/sec)   p_kst 7.650000e-03   p_cons 5.520750e-01   p_joint 2.521250e-02

Joint ci ratio: 7.728714e-02	ci left: 2.671382e-02	ci right 2.887231e-02	k: 2500	n:90000
Cons ci ratio: 1.176770e-02	ci left: 5.488996e-01	ci right 5.554082e-01	k: 49694	n:90000
KS ci ratio: 1.480108e-01	ci left: 7.160685e-03	ci right 8.315827e-03	k: 695	n:90000
LETMD1   90000 perm   20 sec   (4558 perm/sec)   p_kst 7.722222e-03   p_cons 5.521556e-01   p_joint 2.777778e-02

Joint ci ratio: 6.419251e-02	ci left: 3.479479e-02	ci right 3.711223e-02	k: 3594	n:100000
Cons ci ratio: 1.115335e-02	ci left: 5.495317e-01	ci right 5.557052e-01	k: 55262	n:100000
KS ci ratio: 1.398094e-01	ci left: 7.254412e-03	ci right 8.354425e-03	k: 779	n:100000
LETMD1   100000 perm   22 sec   (4465 perm/sec)   p_kst 7.790000e-03   p_cons 5.526200e-01   p_joint 3.594000e-02

Joint ci ratio: 8.674260e-02	ci left: 1.743602e-02	ci right 1.902589e-02	k: 2004	n:110000
Cons ci ratio: 1.028135e-02	ci left: 5.663128e-01	ci right 5.721744e-01	k: 62617	n:110000
KS ci ratio: 1.314624e-01	ci left: 7.490808e-03	ci right 8.553559e-03	k: 881	n:110000
LETMD1   110000 perm   25 sec   (4377 perm/sec)   p_kst 8.009091e-03   p_cons 5.692455e-01   p_joint 1.821818e-02

Joint ci ratio: 7.871162e-02	ci left: 1.945233e-02	ci right 2.105431e-02	k: 2429	n:120000
Cons ci ratio: 9.835533e-03	ci left: 5.668428e-01	ci right 5.724538e-01	k: 68358	n:120000
KS ci ratio: 1.256147e-01	ci left: 7.544085e-03	ci right 8.563238e-03	k: 965	n:120000
LETMD1   120000 perm   28 sec   (4290 perm/sec)   p_kst 8.041667e-03   p_cons 5.696500e-01   p_joint 2.024167e-02

Joint ci ratio: 6.996619e-02	ci left: 2.275137e-02	ci right 2.440843e-02	k: 3064	n:130000
Cons ci ratio: 9.441012e-03	ci left: 5.674035e-01	ci right 5.727934e-01	k: 74113	n:130000
KS ci ratio: 1.203683e-01	ci left: 7.604975e-03	ci right 8.586388e-03	k: 1051	n:130000
LETMD1   130000 perm   31 sec   (4211 perm/sec)   p_kst 8.084615e-03   p_cons 5.701000e-01   p_joint 2.356923e-02

Joint ci ratio: 7.160698e-02	ci left: 2.020616e-02	ci right 2.171377e-02	k: 2933	n:140000
Cons ci ratio: 9.093351e-03	ci left: 5.677305e-01	ci right 5.729237e-01	k: 79846	n:140000
KS ci ratio: 1.159343e-01	ci left: 7.630174e-03	ci right 8.576083e-03	k: 1133	n:140000
LETMD1   140000 perm   34 sec   (4131 perm/sec)   p_kst 8.092857e-03   p_cons 5.703286e-01   p_joint 2.095000e-02

Joint ci ratio: 7.142256e-02	ci left: 1.898305e-02	ci right 2.039560e-02	k: 2952	n:150000
Cons ci ratio: 8.790190e-03	ci left: 5.675300e-01	ci right 5.725473e-01	k: 85506	n:150000
KS ci ratio: 1.126122e-01	ci left: 7.561857e-03	ci right 8.470648e-03	k: 1201	n:150000
LETMD1   150000 perm   37 sec   (4054 perm/sec)   p_kst 8.006667e-03   p_cons 5.700400e-01   p_joint 1.968000e-02

Joint ci ratio: 7.345645e-02	ci left: 1.684472e-02	ci right 1.813535e-02	k: 2797	n:160000
Cons ci ratio: 8.507858e-03	ci left: 5.677950e-01	ci right 5.726525e-01	k: 91236	n:160000
KS ci ratio: 1.086582e-01	ci left: 7.630115e-03	ci right 8.512851e-03	k: 1290	n:160000
LETMD1   160000 perm   40 sec   (3984 perm/sec)   p_kst 8.062500e-03   p_cons 5.702250e-01   p_joint 1.748125e-02

Joint ci ratio: 6.622439e-02	ci left: 1.952492e-02	ci right 2.086798e-02	k: 3432	n:170000
Cons ci ratio: 8.255844e-03	ci left: 5.677484e-01	ci right 5.724609e-01	k: 96918	n:170000
KS ci ratio: 1.049784e-01	ci left: 7.708020e-03	ci right 8.567705e-03	k: 1382	n:170000
LETMD1   170000 perm   43 sec   (3916 perm/sec)   p_kst 8.129412e-03   p_cons 5.701059e-01   p_joint 2.018824e-02

Joint ci ratio: 6.337738e-02	ci left: 2.015112e-02	ci right 2.147548e-02	k: 3745	n:180000
Cons ci ratio: 8.018065e-03	ci left: 5.681315e-01	ci right 5.727107e-01	k: 102676	n:180000
KS ci ratio: 1.020682e-01	ci left: 7.712735e-03	ci right 8.547668e-03	k: 1462	n:180000
LETMD1   180000 perm   47 sec   (3851 perm/sec)   p_kst 8.122222e-03   p_cons 5.704222e-01   p_joint 2.080556e-02

Joint ci ratio: 6.477548e-02	ci left: 1.829760e-02	ci right 1.952766e-02	k: 3592	n:190000
Cons ci ratio: 7.798116e-03	ci left: 5.685760e-01	ci right 5.730324e-01	k: 108453	n:190000
KS ci ratio: 9.961546e-02	ci left: 7.681315e-03	ci right 8.491696e-03	k: 1535	n:190000
LETMD1   190000 perm   50 sec   (3788 perm/sec)   p_kst 8.078947e-03   p_cons 5.708053e-01   p_joint 1.890526e-02

Outputting figure to mutsig2_images.part000000000096/LETMD1.3_1119_190000_0.0080789_0.57081_0.018905.png
                gene_name: LETMD1
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 60 percent done.
LGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
Cons ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
KS ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
LGI3   10000 perm   2 sec   (5932 perm/sec)   p_kst 7.072000e-01   p_cons 8.970000e-02   p_joint 4.583000e-01

Joint ci ratio: 2.934683e-02	ci left: 4.645114e-01	ci right 4.783969e-01	k: 9429	n:20000
Cons ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
KS ci ratio: 1.709888e-02	ci left: 7.180999e-01	ci right 7.305348e-01	k: 14487	n:20000
LGI3   20000 perm   4 sec   (5229 perm/sec)   p_kst 7.243500e-01   p_cons 9.325000e-02   p_joint 4.714500e-01

Outputting figure to mutsig2_images.part000000000096/LGI3.3_1679_20000_0.72435_0.09325_0.47145.png
                gene_name: LGI3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
LHFPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.746117e-02	ci left: 5.127548e-01	ci right 5.324320e-01	k: 5226	n:10000
Cons ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
KS ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
LHFPL1   10000 perm   2 sec   (6552 perm/sec)   p_kst 6.615000e-01   p_cons 2.640000e-01   p_joint 5.226000e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL1.3_675_10000_0.6615_0.264_0.5226.png
                gene_name: LHFPL1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 64 percent done.
LHFPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
Cons ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
KS ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
LHFPL3   10000 perm   2 sec   (6397 perm/sec)   p_kst 4.487000e-01   p_cons 3.838000e-01   p_joint 9.704000e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL3.3_723_10000_0.4487_0.3838_0.9704.png
                gene_name: LHFPL3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 66 percent done.
LHX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
Cons ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
KS ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
LHX4   10000 perm   2 sec   (6216 perm/sec)   p_kst 1.113000e-01   p_cons 5.992000e-01   p_joint 1.430000e-01

Joint ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
Cons ci ratio: 2.271586e-02	ci left: 5.913666e-01	ci right 6.050049e-01	k: 11964	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
LHX4   20000 perm   4 sec   (5406 perm/sec)   p_kst 1.115000e-01   p_cons 5.982000e-01   p_joint 1.186000e-01

Outputting figure to mutsig2_images.part000000000096/LHX4.3_1197_20000_0.1115_0.5982_0.1186.png
                gene_name: LHX4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
LIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
Cons ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
KS ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
LIG3   10000 perm   2 sec   (5294 perm/sec)   p_kst 2.544000e-01   p_cons 7.660000e-02   p_joint 1.740000e-01

Joint ci ratio: 5.689846e-02	ci left: 1.863141e-01	ci right 1.972756e-01	k: 3835	n:20000
Cons ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
KS ci ratio: 4.622176e-02	ci left: 2.583472e-01	ci right 2.706213e-01	k: 5289	n:20000
LIG3   20000 perm   4 sec   (4693 perm/sec)   p_kst 2.644500e-01   p_cons 8.155000e-02   p_joint 1.917500e-01

Outputting figure to mutsig2_images.part000000000096/LIG3.3_3164_20000_0.26445_0.08155_0.19175.png
                gene_name: LIG3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 69 percent done.
LDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
KS ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
LDHB   10000 perm   1 sec   (6783 perm/sec)   p_kst 9.860000e-01   p_cons 2.372000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDHB.2_1033_10000_0.986_0.2372_1.png
                gene_name: LDHB
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
LDHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
Cons ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
LDHD   10000 perm   2 sec   (6356 perm/sec)   p_kst 3.295000e-01   p_cons 4.637000e-01   p_joint 4.899000e-01

Outputting figure to mutsig2_images.part000000000096/LDHD.2_1568_10000_0.3295_0.4637_0.4899.png
                gene_name: LDHD
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 72 percent done.
LDLRAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
LDLRAD2   10000 perm   1 sec   (7258 perm/sec)   p_kst 4.694000e-01   p_cons 4.005000e-01   p_joint 4.466000e-01

Outputting figure to mutsig2_images.part000000000096/LDLRAD2.2_839_10000_0.4694_0.4005_0.4466.png
                gene_name: LDLRAD2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 74 percent done.
LDLRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
Cons ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
KS ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
LDLRAP1   10000 perm   1 sec   (6774 perm/sec)   p_kst 3.339000e-01   p_cons 1.468000e-01   p_joint 4.924000e-01

Outputting figure to mutsig2_images.part000000000096/LDLRAP1.2_963_10000_0.3339_0.1468_0.4924.png
                gene_name: LDLRAP1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 76 percent done.
LEMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
KS ci ratio: 1.115922e-02	ci left: 9.197660e-01	ci right 9.301849e-01	k: 9251	n:10000
LEMD1   10000 perm   1 sec   (7299 perm/sec)   p_kst 9.251000e-01   p_cons 5.730000e-02   p_joint 3.303000e-01

Joint ci ratio: 3.324792e-02	ci left: 4.031722e-01	ci right 4.168540e-01	k: 8200	n:20000
Cons ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
KS ci ratio: 7.771691e-03	ci left: 9.234607e-01	ci right 9.307145e-01	k: 18543	n:20000
LEMD1   20000 perm   3 sec   (6310 perm/sec)   p_kst 9.271500e-01   p_cons 5.645000e-02   p_joint 4.100000e-01

Joint ci ratio: 3.990210e-02	ci left: 2.385192e-01	ci right 2.482638e-01	k: 7301	n:30000
Cons ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
KS ci ratio: 6.311338e-03	ci left: 9.248808e-01	ci right 9.307693e-01	k: 27836	n:30000
LEMD1   30000 perm   5 sec   (5947 perm/sec)   p_kst 9.278667e-01   p_cons 5.593333e-02   p_joint 2.433667e-01

Outputting figure to mutsig2_images.part000000000096/LEMD1.2_339_30000_0.92787_0.055933_0.24337.png
                gene_name: LEMD1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 78 percent done.
LENG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
KS ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
LENG1   10000 perm   1 sec   (6938 perm/sec)   p_kst 8.238000e-01   p_cons 3.131000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LENG1.2_811_10000_0.8238_0.3131_1.png
                gene_name: LENG1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
LGALS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
KS ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
LGALS13   10000 perm   1 sec   (7237 perm/sec)   p_kst 8.663000e-01   p_cons 9.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGALS13.2_436_10000_0.8663_0.9559_1.png
                gene_name: LGALS13
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
LGALS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
KS ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
LGALS2   10000 perm   1 sec   (7334 perm/sec)   p_kst 3.666000e-01   p_cons 4.191000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGALS2.2_415_10000_0.3666_0.4191_1.png
                gene_name: LGALS2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
LGALS3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
Cons ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
KS ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
LGALS3BP   10000 perm   2 sec   (5990 perm/sec)   p_kst 1.704000e-01   p_cons 1.443000e-01   p_joint 2.129000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS3BP.2_1778_10000_0.1704_0.1443_0.2129.png
                gene_name: LGALS3BP
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 84 percent done.
LGALS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
Cons ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
KS ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
LGALS4   10000 perm   2 sec   (6629 perm/sec)   p_kst 5.550000e-02   p_cons 7.065000e-01   p_joint 1.424000e-01

Joint ci ratio: 6.607308e-02	ci left: 1.446830e-01	ci right 1.546191e-01	k: 2992	n:20000
Cons ci ratio: 1.788675e-02	ci left: 6.996313e-01	ci right 7.123088e-01	k: 14120	n:20000
KS ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
LGALS4   20000 perm   3 sec   (5828 perm/sec)   p_kst 5.310000e-02   p_cons 7.060000e-01   p_joint 1.496000e-01

Joint ci ratio: 5.665858e-02	ci left: 1.336875e-01	ci right 1.415161e-01	k: 4127	n:30000
Cons ci ratio: 1.457294e-02	ci left: 7.017127e-01	ci right 7.120472e-01	k: 21207	n:30000
KS ci ratio: 9.563391e-02	ci left: 5.049159e-02	ci right 5.559541e-02	k: 1590	n:30000
LGALS4   30000 perm   5 sec   (5474 perm/sec)   p_kst 5.300000e-02   p_cons 7.069000e-01   p_joint 1.375667e-01

Outputting figure to mutsig2_images.part000000000096/LGALS4.2_1012_30000_0.053_0.7069_0.13757.png
                gene_name: LGALS4
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 86 percent done.
LGTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 1.324394e-02	ci left: 8.914916e-01	ci right 9.034757e-01	k: 8976	n:10000
LGTN   10000 perm   2 sec   (6075 perm/sec)   p_kst 8.976000e-01   p_cons 2.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGTN.2_1815_10000_0.8976_0.299_1.png
                gene_name: LGTN
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
LHFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
Cons ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
KS ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
LHFP   10000 perm   1 sec   (7138 perm/sec)   p_kst 7.080000e-02   p_cons 7.438000e-01   p_joint 7.080000e-02

Joint ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
Cons ci ratio: 1.631044e-02	ci left: 7.366823e-01	ci right 7.488470e-01	k: 14856	n:20000
KS ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
LHFP   20000 perm   3 sec   (6160 perm/sec)   p_kst 7.230000e-02   p_cons 7.428000e-01   p_joint 7.230000e-02

Outputting figure to mutsig2_images.part000000000096/LHFP.2_615_20000_0.0723_0.7428_0.0723.png
                gene_name: LHFP
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 90 percent done.
LHFPL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
Cons ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
LHFPL4   10000 perm   1 sec   (6926 perm/sec)   p_kst 6.310000e-02   p_cons 4.685000e-01   p_joint 3.047000e-01

Joint ci ratio: 6.431362e-02	ci left: 1.515885e-01	ci right 1.617116e-01	k: 3132	n:20000
Cons ci ratio: 2.937334e-02	ci left: 4.640618e-01	ci right 4.779466e-01	k: 9420	n:20000
KS ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
LHFPL4   20000 perm   3 sec   (6021 perm/sec)   p_kst 6.295000e-02   p_cons 4.710000e-01   p_joint 1.566000e-01

Joint ci ratio: 5.256187e-02	ci left: 1.522735e-01	ci right 1.605265e-01	k: 4691	n:30000
Cons ci ratio: 2.396464e-02	ci left: 4.657377e-01	ci right 4.770679e-01	k: 14142	n:30000
KS ci ratio: 8.777750e-02	ci left: 5.959078e-02	ci right 6.509435e-02	k: 1869	n:30000
LHFPL4   30000 perm   5 sec   (5695 perm/sec)   p_kst 6.230000e-02   p_cons 4.714000e-01   p_joint 1.563667e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL4.2_756_30000_0.0623_0.4714_0.15637.png
                gene_name: LHFPL4
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 91 percent done.
LHFPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
Cons ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
KS ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
LHFPL5   10000 perm   1 sec   (7436 perm/sec)   p_kst 2.899000e-01   p_cons 1.584000e-01   p_joint 3.605000e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL5.2_672_10000_0.2899_0.1584_0.3605.png
                gene_name: LHFPL5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 93 percent done.
LHPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
Cons ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
KS ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
LHPP   10000 perm   1 sec   (6888 perm/sec)   p_kst 3.197000e-01   p_cons 1.613000e-01   p_joint 1.632000e-01

Outputting figure to mutsig2_images.part000000000096/LHPP.2_841_10000_0.3197_0.1613_0.1632.png
                gene_name: LHPP
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 95 percent done.
LIAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
KS ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
LIAS   10000 perm   2 sec   (6648 perm/sec)   p_kst 8.193000e-01   p_cons 6.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LIAS.2_1163_10000_0.8193_0.6051_1.png
                gene_name: LIAS
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
LIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
LIF   10000 perm   1 sec   (7140 perm/sec)   p_kst 4.596000e-01   p_cons 5.002000e-01   p_joint 7.043000e-01

Outputting figure to mutsig2_images.part000000000096/LIF.2_621_10000_0.4596_0.5002_0.7043.png
                gene_name: LIF
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 98 percent done.
LILRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
LILRA3   10000 perm   1 sec   (6834 perm/sec)   p_kst 1.780000e-01   p_cons 2.171000e-01   p_joint 1.131000e-01

Joint ci ratio: 6.244488e-02	ci left: 1.594355e-01	ci right 1.697622e-01	k: 3291	n:20000
Cons ci ratio: 5.262132e-02	ci left: 2.114523e-01	ci right 2.229301e-01	k: 4343	n:20000
KS ci ratio: 5.849821e-02	ci left: 1.779591e-01	ci right 1.887331e-01	k: 3666	n:20000
LILRA3   20000 perm   3 sec   (5920 perm/sec)   p_kst 1.833000e-01   p_cons 2.171500e-01   p_joint 1.645500e-01

Outputting figure to mutsig2_images.part000000000096/LILRA3.2_1348_20000_0.1833_0.21715_0.16455.png
                gene_name: LILRA3
               theta_stop: 0.062 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000096
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 96 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 4422137: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000097> was used as the working directory.
Started at Wed Oct 24 17:58:15 2012
Results reported at Wed Oct 24 18:10:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000097.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000097.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 97  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000097.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    784.89 sec.
    Max Memory :      5360 MB
    Max Swap   :      7900 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
97
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 97
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 97: processing genes 8686 - 8776
Calculating significance of each gene.
Using projection method.
8686	LILRA4	4.399338e-01
8687	LILRA5	1
8688	LILRA6	3.444127e-01
8689	LILRB1	6.791757e-01
8690	LILRB2	1.818646e-03
8691	LILRB3	8.350490e-01
8692	LILRB4	2.113439e-01
8693	LILRB5	8.429994e-01
8694	LIM2	6.337554e-01
8695	LIMA1	7.017109e-01
8696	LIMCH1	9.689095e-01
8697	LIMD1	9.799537e-01
8698	LIMD2	4.364887e-01
8699	LIME1	1
8700	LIMK1	1
8701	LIMK2	9.883318e-01
8702	LIMS1	6.104663e-01
8703	LIMS2	8.513420e-01
8704	LIN28A	7.137203e-01
8705	LIN28B	1.608580e-03
8706	LIN37	2.111963e-01
8707	LIN52	8.624083e-02
8708	LIN54	9.317077e-01
8709	LIN7A	2.943520e-01
8710	LIN7B	3.109458e-01
8711	LIN7C	2.270139e-01
8712	LIN9	5.136507e-01
8713	LINGO1	9.666369e-01
8714	LINGO2	4.466168e-01
8715	LINGO3	1
8716	LINGO4	4.490387e-01
8717	LINS1	6.302817e-01
8718	LIPA	7.130273e-01
8719	LIPC	4.645574e-01
8720	LIPE	9.907566e-01
8721	LIPF	4.001456e-01
8722	LIPG	7.389334e-01
8723	LIPH	7.452373e-01
8724	LIPI	8.397560e-04
8725	LIPJ	8.748341e-01
8726	LIPK	1.262598e-01
8727	LIPN	1
8728	LIPT1	1
8729	LITAF	1
8730	LIX1	5.492662e-01
8731	LIX1L	1
8732	LLGL1	9.976653e-01
8733	LLGL2	9.674443e-01
8734	LLPH	2.773961e-01
8735	LMAN1	7.784919e-01
8736	LMAN1L	4.188969e-01
8737	LMAN2	3.077286e-01
8738	LMAN2L	1
8739	LMBR1	6.204908e-01
8740	LMBR1L	5.895834e-01
8741	LMBRD1	2.259243e-01
8742	LMBRD2	5.115539e-01
8743	LMCD1	7.333768e-01
8744	LMF1	9.100254e-01
8745	LMF2	7.770077e-01
8746	LMLN	1
8747	LMNA	1
8748	LMNB1	7.285983e-01
8749	LMNB2	1
8750	LMO1	1
8751	LMO2	4.210401e-02
8752	LMO3	1
8753	LMO4	4.327129e-01
8754	LMO7	9.469160e-01
8755	LMOD1	1
8756	LMOD2	6.536297e-01
8757	LMOD3	9.150750e-01
8758	LMTK2	7.811149e-01
8759	LMTK3	8.094217e-01
8760	LMX1A	3.052286e-01
8761	LMX1B	2.596680e-01
8762	LNP1	6.291376e-01
8763	LNPEP	1
8764	LNX1	6.697084e-01
8765	LNX2	8.758281e-01
8766	LOC100130932	1
8767	LOC100302652	1
8768	LOC150786	2.445341e-01
8769	LOC153328	1.140065e-01
8770	LOC200726	2.658230e-01
8771	LOC285033	1
8772	LOC286238	5.813489e-02
8773	LOC401052	2.384529e-01
8774	LOC402644	3.457191e-02
8775	LOC440563	9.318901e-04
8776	LOC55908	2.791850e-01
Done

Running MutSig 2:
Scatter job 97: processing genes 8686 - 8776
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LILRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
Cons ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
KS ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
LILRB2   10000 perm   2 sec   (4843 perm/sec)   p_kst 7.113000e-01   p_cons 6.748000e-01   p_joint 8.255000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB2.12_1849_10000_0.7113_0.6748_0.8255.png
                gene_name: LILRB2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
LILRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
LILRB1   10000 perm   2 sec   (4563 perm/sec)   p_kst 3.070000e-02   p_cons 7.712000e-01   p_joint 7.700000e-02

Joint ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
Cons ci ratio: 1.542058e-02	ci left: 7.576991e-01	ci right 7.695242e-01	k: 15273	n:20000
KS ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
LILRB1   20000 perm   5 sec   (4138 perm/sec)   p_kst 2.990000e-02   p_cons 7.636500e-01   p_joint 6.930000e-02

Joint ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
Cons ci ratio: 1.268094e-02	ci left: 7.561994e-01	ci right 7.658833e-01	k: 22832	n:30000
KS ci ratio: 1.279587e-01	ci left: 2.838926e-02	ci right 3.230240e-02	k: 909	n:30000
LILRB1   30000 perm   7 sec   (4019 perm/sec)   p_kst 3.030000e-02   p_cons 7.610667e-01   p_joint 6.060000e-02

Joint ci ratio: 7.654854e-02	ci left: 5.916504e-02	ci right 6.389887e-02	k: 2460	n:40000
Cons ci ratio: 1.098630e-02	ci left: 7.567138e-01	ci right 7.650982e-01	k: 30437	n:40000
KS ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
LILRB1   40000 perm   10 sec   (3909 perm/sec)   p_kst 3.072500e-02   p_cons 7.609250e-01   p_joint 6.150000e-02

Joint ci ratio: 7.174582e-02	ci left: 5.431508e-02	ci right 5.837662e-02	k: 2816	n:50000
Cons ci ratio: 9.843328e-03	ci left: 7.565331e-01	ci right 7.640367e-01	k: 38015	n:50000
KS ci ratio: 9.771933e-02	ci left: 2.965431e-02	ci right 3.272044e-02	k: 1558	n:50000
LILRB1   50000 perm   13 sec   (3825 perm/sec)   p_kst 3.116000e-02   p_cons 7.603000e-01   p_joint 5.632000e-02

Outputting figure to mutsig2_images.part000000000097/LILRB1.10_2015_50000_0.03116_0.7603_0.05632.png
                gene_name: LILRB1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 3 percent done.
LIMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
Cons ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
KS ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
LIMA1   10000 perm   2 sec   (5114 perm/sec)   p_kst 2.680000e-01   p_cons 1.505000e-01   p_joint 1.849000e-01

Outputting figure to mutsig2_images.part000000000097/LIMA1.10_2323_10000_0.268_0.1505_0.1849.png
                gene_name: LIMA1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 5 percent done.
LIPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
Cons ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
KS ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
LIPI   10000 perm   2 sec   (5315 perm/sec)   p_kst 1.686000e-01   p_cons 1.210000e-02   p_joint 6.530000e-02

Joint ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
Cons ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
KS ci ratio: 5.880278e-02	ci left: 1.764270e-01	ci right 1.871657e-01	k: 3635	n:20000
LIPI   20000 perm   4 sec   (4829 perm/sec)   p_kst 1.817500e-01   p_cons 1.320000e-02   p_joint 3.395000e-02

Joint ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
Cons ci ratio: 2.172740e-01	ci left: 9.566664e-03	ci right 1.192952e-02	k: 321	n:30000
KS ci ratio: 4.813117e-02	ci left: 1.766906e-01	ci right 1.854379e-01	k: 5431	n:30000
LIPI   30000 perm   7 sec   (4614 perm/sec)   p_kst 1.810333e-01   p_cons 1.070000e-02   p_joint 3.936667e-02

Joint ci ratio: 9.349108e-02	ci left: 4.012839e-02	ci right 4.408843e-02	k: 1683	n:40000
Cons ci ratio: 1.835398e-01	ci left: 1.023953e-02	ci right 1.233232e-02	k: 450	n:40000
KS ci ratio: 4.158712e-02	ci left: 1.779567e-01	ci right 1.855395e-01	k: 7269	n:40000
LIPI   40000 perm   9 sec   (4485 perm/sec)   p_kst 1.817250e-01   p_cons 1.125000e-02   p_joint 4.207500e-02

Joint ci ratio: 1.069182e-01	ci left: 2.477854e-02	ci right 2.759684e-02	k: 1308	n:50000
Cons ci ratio: 1.671502e-01	ci left: 9.970022e-03	ci right 1.180743e-02	k: 543	n:50000
KS ci ratio: 3.761339e-02	ci left: 1.750927e-01	ci right 1.818247e-01	k: 8922	n:50000
LIPI   50000 perm   11 sec   (4383 perm/sec)   p_kst 1.784400e-01   p_cons 1.086000e-02   p_joint 2.616000e-02

Joint ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
Cons ci ratio: 1.445001e-01	ci left: 1.124050e-02	ci right 1.300716e-02	k: 726	n:60000
KS ci ratio: 3.538386e-02	ci left: 1.668035e-01	ci right 1.728285e-01	k: 10188	n:60000
LIPI   60000 perm   14 sec   (4298 perm/sec)   p_kst 1.698000e-01   p_cons 1.210000e-02   p_joint 2.256667e-02

Joint ci ratio: 9.491800e-02	ci left: 2.265556e-02	ci right 2.492701e-02	k: 1664	n:70000
Cons ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
KS ci ratio: 3.270802e-02	ci left: 1.674652e-01	ci right 1.730479e-01	k: 11917	n:70000
LIPI   70000 perm   17 sec   (4215 perm/sec)   p_kst 1.702429e-01   p_cons 1.225714e-02   p_joint 2.377143e-02

Joint ci ratio: 8.833364e-02	ci left: 2.296271e-02	ci right 2.509700e-02	k: 1921	n:80000
Cons ci ratio: 1.242573e-01	ci left: 1.152346e-02	ci right 1.306221e-02	k: 982	n:80000
KS ci ratio: 3.052883e-02	ci left: 1.682600e-01	ci right 1.734889e-01	k: 13669	n:80000
LIPI   80000 perm   19 sec   (4141 perm/sec)   p_kst 1.708625e-01   p_cons 1.227500e-02   p_joint 2.401250e-02

Joint ci ratio: 8.068604e-02	ci left: 2.452345e-02	ci right 2.659618e-02	k: 2299	n:90000
Cons ci ratio: 1.165060e-01	ci left: 1.169800e-02	ci right 1.315590e-02	k: 1117	n:90000
KS ci ratio: 2.880405e-02	ci left: 1.682028e-01	ci right 1.731296e-01	k: 15359	n:90000
LIPI   90000 perm   22 sec   (4070 perm/sec)   p_kst 1.706556e-01   p_cons 1.241111e-02   p_joint 2.554444e-02

Joint ci ratio: 7.894920e-02	ci left: 2.310927e-02	ci right 2.501847e-02	k: 2405	n:100000
Cons ci ratio: 1.106276e-01	ci left: 1.171356e-02	ci right 1.309494e-02	k: 1239	n:100000
KS ci ratio: 2.733237e-02	ci left: 1.682632e-01	ci right 1.729359e-01	k: 17059	n:100000
LIPI   100000 perm   25 sec   (4000 perm/sec)   p_kst 1.705900e-01   p_cons 1.239000e-02   p_joint 2.405000e-02

Joint ci ratio: 7.837416e-02	ci left: 2.136415e-02	ci right 2.311571e-02	k: 2445	n:110000
Cons ci ratio: 1.059920e-01	ci left: 1.163043e-02	ci right 1.294093e-02	k: 1350	n:110000
KS ci ratio: 2.609898e-02	ci left: 1.679562e-01	ci right 1.724067e-01	k: 18719	n:110000
LIPI   110000 perm   28 sec   (3937 perm/sec)   p_kst 1.701727e-01   p_cons 1.227273e-02   p_joint 2.222727e-02

Joint ci ratio: 7.318461e-02	ci left: 2.249476e-02	ci right 2.421171e-02	k: 2801	n:120000
Cons ci ratio: 1.015431e-01	ci left: 1.164340e-02	ci right 1.289701e-02	k: 1471	n:120000
KS ci ratio: 2.498700e-02	ci left: 1.680609e-01	ci right 1.723217e-01	k: 20422	n:120000
LIPI   120000 perm   31 sec   (3867 perm/sec)   p_kst 1.701833e-01   p_cons 1.225833e-02   p_joint 2.334167e-02

Joint ci ratio: 5.993054e-02	ci left: 3.090584e-02	ci right 3.282281e-02	k: 4141	n:130000
Cons ci ratio: 9.745638e-02	ci left: 1.169288e-02	ci right 1.289825e-02	k: 1597	n:130000
KS ci ratio: 2.361286e-02	ci left: 1.728461e-01	ci right 1.769838e-01	k: 22738	n:130000
LIPI   130000 perm   34 sec   (3795 perm/sec)   p_kst 1.749077e-01   p_cons 1.228462e-02   p_joint 3.185385e-02

Outputting figure to mutsig2_images.part000000000097/LIPI.10_1486_130000_0.17491_0.012285_0.031854.png
                gene_name: LIPI
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 7 percent done.
LMO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
LMO7   10000 perm   2 sec   (4271 perm/sec)   p_kst 6.340000e-02   p_cons 4.850000e-01   p_joint 1.303000e-01

Joint ci ratio: 8.308492e-02	ci left: 9.597378e-02	ci right 1.043429e-01	k: 2002	n:20000
Cons ci ratio: 2.774701e-02	ci left: 4.924960e-01	ci right 5.064042e-01	k: 9989	n:20000
KS ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
LMO7   20000 perm   5 sec   (3878 perm/sec)   p_kst 6.500000e-02   p_cons 4.994500e-01   p_joint 1.001000e-01

Joint ci ratio: 6.209371e-02	ci left: 1.136136e-01	ci right 1.209274e-01	k: 3517	n:30000
Cons ci ratio: 2.268689e-02	ci left: 4.930924e-01	ci right 5.044411e-01	k: 14963	n:30000
KS ci ratio: 8.583578e-02	ci left: 6.220324e-02	ci right 6.781469e-02	k: 1949	n:30000
LMO7   30000 perm   8 sec   (3753 perm/sec)   p_kst 6.496667e-02   p_cons 4.987667e-01   p_joint 1.172333e-01

Outputting figure to mutsig2_images.part000000000097/LMO7.10_5250_30000_0.064967_0.49877_0.11723.png
                gene_name: LMO7
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
LMTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
Cons ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
LMTK2   10000 perm   2 sec   (4032 perm/sec)   p_kst 6.650000e-02   p_cons 8.945000e-01   p_joint 1.736000e-01

Joint ci ratio: 6.027681e-02	ci left: 1.692626e-01	ci right 1.798322e-01	k: 3490	n:20000
Cons ci ratio: 9.643698e-03	ci left: 8.876672e-01	ci right 8.963185e-01	k: 17841	n:20000
KS ci ratio: 1.016175e-01	ci left: 6.572047e-02	ci right 7.280538e-02	k: 1384	n:20000
LMTK2   20000 perm   5 sec   (3675 perm/sec)   p_kst 6.920000e-02   p_cons 8.920500e-01   p_joint 1.745000e-01

Joint ci ratio: 5.673031e-02	ci left: 1.333911e-01	ci right 1.412126e-01	k: 4118	n:30000
Cons ci ratio: 7.898890e-03	ci left: 8.878584e-01	ci right 8.949323e-01	k: 26743	n:30000
KS ci ratio: 8.337044e-02	ci left: 6.576487e-02	ci right 7.151901e-02	k: 2058	n:30000
LMTK2   30000 perm   8 sec   (3536 perm/sec)   p_kst 6.860000e-02   p_cons 8.914333e-01   p_joint 1.372667e-01

Outputting figure to mutsig2_images.part000000000097/LMTK2.9_4568_30000_0.0686_0.89143_0.13727.png
                gene_name: LMTK2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 10 percent done.
LILRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
Cons ci ratio: 4.635899e-03	ci left: 9.838246e-01	ci right 9.884858e-01	k: 9863	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
LILRB4   10000 perm   2 sec   (5740 perm/sec)   p_kst 6.871000e-01   p_cons 9.863000e-01   p_joint 7.620000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB4.8_1395_10000_0.6871_0.9863_0.762.png
                gene_name: LILRB4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 12 percent done.
LIN28B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
LIN28B   10000 perm   2 sec   (5754 perm/sec)   p_kst 3.788000e-01   p_cons 2.092000e-01   p_joint 3.627000e-01

Outputting figure to mutsig2_images.part000000000097/LIN28B.7_769_10000_0.3788_0.2092_0.3627.png
                gene_name: LIN28B
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 14 percent done.
LOC440563
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
Cons ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
KS ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
LOC440563   10000 perm   2 sec   (5711 perm/sec)   p_kst 4.733000e-01   p_cons 3.121000e-01   p_joint 5.700000e-01

Outputting figure to mutsig2_images.part000000000097/LOC440563.7_886_10000_0.4733_0.3121_0.57.png
                gene_name: LOC440563
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 15 percent done.
LILRB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
Cons ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
LILRB5   10000 perm   2 sec   (5170 perm/sec)   p_kst 9.516000e-01   p_cons 1.934000e-01   p_joint 5.139000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB5.6_1828_10000_0.9516_0.1934_0.5139.png
                gene_name: LILRB5
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 17 percent done.
LIPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
KS ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
LIPC   10000 perm   2 sec   (5466 perm/sec)   p_kst 6.838000e-01   p_cons 9.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIPC.6_1536_10000_0.6838_0.9319_1.png
                gene_name: LIPC
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
LMX1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
Cons ci ratio: 7.714091e-03	ci left: 9.589035e-01	ci right 9.664239e-01	k: 9628	n:10000
KS ci ratio: 2.511240e-02	ci left: 6.999874e-01	ci right 7.178907e-01	k: 7090	n:10000
LMX1A   10000 perm   2 sec   (5561 perm/sec)   p_kst 7.090000e-01   p_cons 9.628000e-01   p_joint 8.411000e-01

Outputting figure to mutsig2_images.part000000000097/LMX1A.6_1181_10000_0.709_0.9628_0.8411.png
                gene_name: LMX1A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 20 percent done.
LIMCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
LIMCH1   10000 perm   2 sec   (4869 perm/sec)   p_kst 8.200000e-01   p_cons 4.675000e-01   p_joint 7.063000e-01

Outputting figure to mutsig2_images.part000000000097/LIMCH1.5_3388_10000_0.82_0.4675_0.7063.png
                gene_name: LIMCH1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 22 percent done.
LINGO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
Cons ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
KS ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
LINGO4   10000 perm   2 sec   (6012 perm/sec)   p_kst 3.974000e-01   p_cons 5.701000e-01   p_joint 5.621000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO4.5_1786_10000_0.3974_0.5701_0.5621.png
                gene_name: LINGO4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 24 percent done.
LMBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
LMBR1   10000 perm   2 sec   (5316 perm/sec)   p_kst 1.467000e-01   p_cons 7.644000e-01   p_joint 4.414000e-01

Outputting figure to mutsig2_images.part000000000097/LMBR1.5_1541_10000_0.1467_0.7644_0.4414.png
                gene_name: LMBR1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 25 percent done.
LMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
Cons ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
KS ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
LMOD2   10000 perm   2 sec   (5414 perm/sec)   p_kst 7.249000e-01   p_cons 1.306000e-01   p_joint 3.772000e-01

Joint ci ratio: 2.989721e-02	ci left: 4.552712e-01	ci right 4.691398e-01	k: 9244	n:20000
Cons ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
KS ci ratio: 1.779416e-02	ci left: 7.017946e-01	ci right 7.144449e-01	k: 14163	n:20000
LMOD2   20000 perm   4 sec   (4875 perm/sec)   p_kst 7.081500e-01   p_cons 1.301500e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000097/LMOD2.5_1656_20000_0.70815_0.13015_0.4622.png
                gene_name: LMOD2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 27 percent done.
LILRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
Cons ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
KS ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
LILRA6   10000 perm   2 sec   (6142 perm/sec)   p_kst 4.308000e-01   p_cons 4.796000e-01   p_joint 6.460000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA6.4_1478_10000_0.4308_0.4796_0.646.png
                gene_name: LILRA6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
LIN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
Cons ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
KS ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
LIN9   10000 perm   2 sec   (5760 perm/sec)   p_kst 5.946000e-01   p_cons 4.960000e-01   p_joint 7.974000e-01

Outputting figure to mutsig2_images.part000000000097/LIN9.4_1737_10000_0.5946_0.496_0.7974.png
                gene_name: LIN9
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 31 percent done.
LINGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
Cons ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
KS ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
LINGO2   10000 perm   2 sec   (5532 perm/sec)   p_kst 1.378000e-01   p_cons 4.128000e-01   p_joint 2.313000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO2.4_1825_10000_0.1378_0.4128_0.2313.png
                gene_name: LINGO2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 32 percent done.
LIPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.448086e-02	ci left: 7.104810e-01	ci right 7.281911e-01	k: 7194	n:10000
Cons ci ratio: 3.058183e-02	ci left: 6.120101e-01	ci right 6.311190e-01	k: 6216	n:10000
KS ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
LIPK   10000 perm   2 sec   (5975 perm/sec)   p_kst 5.572000e-01   p_cons 6.216000e-01   p_joint 7.194000e-01

Outputting figure to mutsig2_images.part000000000097/LIPK.4_1234_10000_0.5572_0.6216_0.7194.png
                gene_name: LIPK
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 34 percent done.
LMAN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
Cons ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
KS ci ratio: 1.630117e-02	ci left: 8.454992e-01	ci right 8.594947e-01	k: 8526	n:10000
LMAN1L   10000 perm   2 sec   (5658 perm/sec)   p_kst 8.526000e-01   p_cons 4.023000e-01   p_joint 7.744000e-01

Outputting figure to mutsig2_images.part000000000097/LMAN1L.4_1637_10000_0.8526_0.4023_0.7744.png
                gene_name: LMAN1L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 36 percent done.
LMAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
Cons ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
KS ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
LMAN2   10000 perm   2 sec   (5844 perm/sec)   p_kst 5.400000e-03   p_cons 4.962000e-01   p_joint 3.840000e-02

Joint ci ratio: 1.394623e-01	ci left: 3.534423e-02	ci right 4.069115e-02	k: 759	n:20000
Cons ci ratio: 2.748468e-02	ci left: 4.972455e-01	ci right 5.111532e-01	k: 10084	n:20000
KS ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
LMAN2   20000 perm   4 sec   (5195 perm/sec)   p_kst 6.150000e-03   p_cons 5.042000e-01   p_joint 3.795000e-02

Joint ci ratio: 1.459945e-01	ci left: 2.175113e-02	ci right 2.520867e-02	k: 703	n:30000
Cons ci ratio: 2.247914e-02	ci left: 4.976921e-01	ci right 5.090406e-01	k: 15101	n:30000
KS ci ratio: 2.954537e-01	ci left: 4.972185e-03	ci right 6.725594e-03	k: 174	n:30000
LMAN2   30000 perm   6 sec   (4951 perm/sec)   p_kst 5.800000e-03   p_cons 5.033667e-01   p_joint 2.343333e-02

Joint ci ratio: 1.670756e-01	ci left: 1.243993e-02	ci right 1.473149e-02	k: 542	n:40000
Cons ci ratio: 1.937710e-02	ci left: 5.007876e-01	ci right 5.106115e-01	k: 20228	n:40000
KS ci ratio: 2.600136e-01	ci left: 4.915659e-03	ci right 6.407485e-03	k: 225	n:40000
LMAN2   40000 perm   8 sec   (4790 perm/sec)   p_kst 5.625000e-03   p_cons 5.057000e-01   p_joint 1.355000e-02

Joint ci ratio: 1.831358e-01	ci left: 8.248079e-03	ci right 9.929659e-03	k: 453	n:50000
Cons ci ratio: 1.733154e-02	ci left: 5.013074e-01	ci right 5.100919e-01	k: 25285	n:50000
KS ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
LMAN2   50000 perm   11 sec   (4671 perm/sec)   p_kst 5.200000e-03   p_cons 5.057000e-01   p_joint 9.060000e-03

Joint ci ratio: 1.890243e-01	ci left: 6.443773e-03	ci right 7.804557e-03	k: 426	n:60000
Cons ci ratio: 1.586273e-02	ci left: 5.003909e-01	ci right 5.084086e-01	k: 30264	n:60000
KS ci ratio: 2.246269e-01	ci left: 4.482805e-03	ci right 5.632538e-03	k: 302	n:60000
LMAN2   60000 perm   13 sec   (4554 perm/sec)   p_kst 5.033333e-03   p_cons 5.044000e-01   p_joint 7.100000e-03

Joint ci ratio: 1.604272e-01	ci left: 7.778350e-03	ci right 9.148578e-03	k: 591	n:70000
Cons ci ratio: 1.465925e-02	ci left: 5.016032e-01	ci right 5.090249e-01	k: 35372	n:70000
KS ci ratio: 2.063570e-01	ci left: 4.599324e-03	ci right 5.670900e-03	k: 358	n:70000
LMAN2   70000 perm   16 sec   (4464 perm/sec)   p_kst 5.114286e-03   p_cons 5.053143e-01   p_joint 8.442857e-03

Joint ci ratio: 1.693865e-01	ci left: 6.086524e-03	ci right 7.224697e-03	k: 531	n:80000
Cons ci ratio: 1.402705e-02	ci left: 4.905045e-01	ci right 4.974459e-01	k: 39518	n:80000
KS ci ratio: 1.921572e-01	ci left: 4.677662e-03	ci right 5.683736e-03	k: 413	n:80000
LMAN2   80000 perm   18 sec   (4376 perm/sec)   p_kst 5.162500e-03   p_cons 4.939750e-01   p_joint 6.637500e-03

Joint ci ratio: 1.584382e-01	ci left: 6.220111e-03	ci right 7.300937e-03	k: 607	n:90000
Cons ci ratio: 1.323831e-02	ci left: 4.901950e-01	ci right 4.967387e-01	k: 44412	n:90000
KS ci ratio: 1.793857e-01	ci left: 4.804238e-03	ci right 5.761408e-03	k: 474	n:90000
LMAN2   90000 perm   21 sec   (4296 perm/sec)   p_kst 5.266667e-03   p_cons 4.934667e-01   p_joint 6.744444e-03

Joint ci ratio: 1.241571e-01	ci left: 9.256849e-03	ci right 1.049183e-02	k: 986	n:100000
Cons ci ratio: 1.257600e-02	ci left: 4.896866e-01	ci right 4.958938e-01	k: 49279	n:100000
KS ci ratio: 1.695000e-01	ci left: 4.868955e-03	ci right 5.780099e-03	k: 531	n:100000
LMAN2   100000 perm   24 sec   (4221 perm/sec)   p_kst 5.310000e-03   p_cons 4.927900e-01   p_joint 9.860000e-03

Joint ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
Cons ci ratio: 1.199619e-02	ci left: 4.896049e-01	ci right 4.955228e-01	k: 54182	n:110000
KS ci ratio: 1.615011e-01	ci left: 4.896912e-03	ci right 5.765846e-03	k: 585	n:110000
LMAN2   110000 perm   27 sec   (4150 perm/sec)   p_kst 5.318182e-03   p_cons 4.925636e-01   p_joint 8.863636e-03

Joint ci ratio: 1.138454e-01	ci left: 9.226054e-03	ci right 1.034783e-02	k: 1173	n:120000
Cons ci ratio: 1.148734e-02	ci left: 4.896507e-01	ci right 4.953163e-01	k: 59098	n:120000
KS ci ratio: 1.555174e-01	ci left: 4.856959e-03	ci right 5.683893e-03	k: 631	n:120000
LMAN2   120000 perm   29 sec   (4078 perm/sec)   p_kst 5.258333e-03   p_cons 4.924833e-01   p_joint 9.775000e-03

Joint ci ratio: 1.129220e-01	ci left: 8.665698e-03	ci right 9.710217e-03	k: 1193	n:130000
Cons ci ratio: 1.102308e-02	ci left: 4.903786e-01	ci right 4.958217e-01	k: 64103	n:130000
KS ci ratio: 1.487264e-01	ci left: 4.919935e-03	ci right 5.717760e-03	k: 690	n:130000
LMAN2   130000 perm   32 sec   (4011 perm/sec)   p_kst 5.307692e-03   p_cons 4.931000e-01   p_joint 9.176923e-03

Joint ci ratio: 1.287424e-01	ci left: 6.154867e-03	ci right 7.008620e-03	k: 920	n:140000
Cons ci ratio: 1.061059e-02	ci left: 4.910205e-01	ci right 4.962654e-01	k: 69110	n:140000
KS ci ratio: 1.434282e-01	ci left: 4.926367e-03	ci right 5.694340e-03	k: 742	n:140000
LMAN2   140000 perm   35 sec   (3951 perm/sec)   p_kst 5.300000e-03   p_cons 4.936429e-01   p_joint 6.571429e-03

Joint ci ratio: 1.002014e-01	ci left: 9.593642e-03	ci right 1.061209e-02	k: 1514	n:150000
Cons ci ratio: 1.024362e-02	ci left: 4.914600e-01	ci right 4.965269e-01	k: 74099	n:150000
KS ci ratio: 1.386587e-01	ci left: 4.932379e-03	ci right 5.673607e-03	k: 794	n:150000
LMAN2   150000 perm   39 sec   (3891 perm/sec)   p_kst 5.293333e-03   p_cons 4.939933e-01   p_joint 1.009333e-02

Joint ci ratio: 1.196615e-01	ci left: 6.263655e-03	ci right 7.066879e-03	k: 1065	n:160000
Cons ci ratio: 9.907067e-03	ci left: 4.921097e-01	ci right 4.970155e-01	k: 79130	n:160000
KS ci ratio: 1.340969e-01	ci left: 4.956132e-03	ci right 5.674472e-03	k: 849	n:160000
LMAN2   160000 perm   42 sec   (3833 perm/sec)   p_kst 5.306250e-03   p_cons 4.945625e-01   p_joint 6.656250e-03

Joint ci ratio: 1.149011e-01	ci left: 6.409116e-03	ci right 7.196080e-03	k: 1155	n:170000
Cons ci ratio: 9.610438e-03	ci left: 4.922264e-01	ci right 4.969856e-01	k: 84083	n:170000
KS ci ratio: 1.291707e-01	ci left: 5.040062e-03	ci right 5.741674e-03	k: 915	n:170000
LMAN2   170000 perm   45 sec   (3776 perm/sec)   p_kst 5.382353e-03   p_cons 4.946059e-01   p_joint 6.794118e-03

Joint ci ratio: 7.733745e-02	ci left: 1.352769e-02	ci right 1.462138e-02	k: 2532	n:180000
Cons ci ratio: 9.345180e-03	ci left: 4.919988e-01	ci right 4.966237e-01	k: 88976	n:180000
KS ci ratio: 1.254587e-01	ci left: 5.055886e-03	ci right 5.737971e-03	k: 970	n:180000
LMAN2   180000 perm   48 sec   (3721 perm/sec)   p_kst 5.388889e-03   p_cons 4.943111e-01   p_joint 1.406667e-02

Joint ci ratio: 9.074268e-02	ci left: 9.284743e-03	ci right 1.017242e-02	k: 1847	n:190000
Cons ci ratio: 9.095466e-03	ci left: 4.920862e-01	ci right 4.965876e-01	k: 93924	n:190000
KS ci ratio: 1.217514e-01	ci left: 5.095819e-03	ci right 5.761513e-03	k: 1030	n:190000
LMAN2   190000 perm   52 sec   (3668 perm/sec)   p_kst 5.421053e-03   p_cons 4.943368e-01   p_joint 9.721053e-03

Joint ci ratio: 1.128204e-01	ci left: 5.661360e-03	ci right 6.343077e-03	k: 1199	n:200000
Cons ci ratio: 8.670208e-03	ci left: 5.032613e-01	ci right 5.076486e-01	k: 101091	n:200000
KS ci ratio: 1.184091e-01	ci left: 5.127173e-03	ci right 5.777288e-03	k: 1089	n:200000
LMAN2   200000 perm   55 sec   (3618 perm/sec)   p_kst 5.445000e-03   p_cons 5.054550e-01   p_joint 5.995000e-03

Joint ci ratio: 1.101894e-01	ci left: 5.660259e-03	ci right 6.324917e-03	k: 1257	n:210000
Cons ci ratio: 8.459692e-03	ci left: 5.034068e-01	ci right 5.076883e-01	k: 106165	n:210000
KS ci ratio: 1.155808e-01	ci left: 5.132640e-03	ci right 5.766843e-03	k: 1143	n:210000
LMAN2   210000 perm   59 sec   (3567 perm/sec)   p_kst 5.442857e-03   p_cons 5.055476e-01   p_joint 5.985714e-03

Joint ci ratio: 1.007667e-01	ci left: 6.487420e-03	ci right 7.180215e-03	k: 1502	n:220000
Cons ci ratio: 8.268762e-03	ci left: 5.032403e-01	ci right 5.074232e-01	k: 111173	n:220000
KS ci ratio: 1.127098e-01	ci left: 5.159868e-03	ci right 5.780544e-03	k: 1202	n:220000
LMAN2   220000 perm   63 sec   (3518 perm/sec)   p_kst 5.463636e-03   p_cons 5.053318e-01   p_joint 6.827273e-03

Joint ci ratio: 8.598009e-02	ci left: 8.571256e-03	ci right 9.345543e-03	k: 2059	n:230000
Cons ci ratio: 8.087807e-03	ci left: 5.032371e-01	ci right 5.073280e-01	k: 116215	n:230000
KS ci ratio: 1.104392e-01	ci left: 5.146848e-03	ci right 5.752674e-03	k: 1252	n:230000
LMAN2   230000 perm   66 sec   (3467 perm/sec)   p_kst 5.443478e-03   p_cons 5.052826e-01   p_joint 8.952174e-03

Joint ci ratio: 9.625938e-02	ci left: 6.532031e-03	ci right 7.196629e-03	k: 1646	n:240000
Cons ci ratio: 7.915068e-03	ci left: 5.034351e-01	ci right 5.074398e-01	k: 121305	n:240000
KS ci ratio: 1.078851e-01	ci left: 5.175574e-03	ci right 5.769798e-03	k: 1312	n:240000
LMAN2   240000 perm   70 sec   (3414 perm/sec)   p_kst 5.466667e-03   p_cons 5.054375e-01   p_joint 6.858333e-03

Joint ci ratio: 9.430418e-02	ci left: 6.540174e-03	ci right 7.191337e-03	k: 1715	n:250000
Cons ci ratio: 7.752819e-03	ci left: 5.036261e-01	ci right 5.075498e-01	k: 126397	n:250000
KS ci ratio: 1.055777e-01	ci left: 5.194361e-03	ci right 5.777194e-03	k: 1370	n:250000
LMAN2   250000 perm   74 sec   (3363 perm/sec)   p_kst 5.480000e-03   p_cons 5.055880e-01   p_joint 6.860000e-03

Joint ci ratio: 9.246347e-02	ci left: 6.547817e-03	ci right 7.186327e-03	k: 1784	n:260000
Cons ci ratio: 7.600270e-03	ci left: 5.037955e-01	ci right 5.076429e-01	k: 131487	n:260000
KS ci ratio: 1.035217e-01	ci left: 5.200585e-03	ci right 5.772062e-03	k: 1425	n:260000
LMAN2   260000 perm   78 sec   (3314 perm/sec)   p_kst 5.480769e-03   p_cons 5.057192e-01   p_joint 6.861538e-03

Joint ci ratio: 9.050558e-02	ci left: 6.587591e-03	ci right 7.215657e-03	k: 1862	n:270000
Cons ci ratio: 7.458651e-03	ci left: 5.038011e-01	ci right 5.075765e-01	k: 136536	n:270000
KS ci ratio: 1.015123e-01	ci left: 5.213671e-03	ci right 5.774802e-03	k: 1482	n:270000
LMAN2   270000 perm   83 sec   (3271 perm/sec)   p_kst 5.488889e-03   p_cons 5.056889e-01   p_joint 6.896296e-03

Joint ci ratio: 8.892107e-02	ci left: 6.586236e-03	ci right 7.202608e-03	k: 1929	n:280000
Cons ci ratio: 7.321734e-03	ci left: 5.040070e-01	ci right 5.077143e-01	k: 141641	n:280000
KS ci ratio: 9.961560e-02	ci left: 5.225921e-03	ci right 5.777247e-03	k: 1539	n:280000
LMAN2   280000 perm   87 sec   (3230 perm/sec)   p_kst 5.496429e-03   p_cons 5.058607e-01   p_joint 6.889286e-03

Outputting figure to mutsig2_images.part000000000097/LMAN2.4_1103_280000_0.0054964_0.50586_0.0068893.png
                gene_name: LMAN2
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.0069 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0072 

Current progress: 37 percent done.
LMBRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
Cons ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
KS ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
LMBRD1   10000 perm   2 sec   (5791 perm/sec)   p_kst 5.900000e-01   p_cons 4.073000e-01   p_joint 6.185000e-01

Outputting figure to mutsig2_images.part000000000097/LMBRD1.4_1687_10000_0.59_0.4073_0.6185.png
                gene_name: LMBRD1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
LMBRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
LMBRD2   10000 perm   2 sec   (5885 perm/sec)   p_kst 9.023000e-01   p_cons 5.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMBRD2.4_2156_10000_0.9023_0.5719_1.png
                gene_name: LMBRD2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
LMCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
Cons ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
LMCD1   10000 perm   2 sec   (6327 perm/sec)   p_kst 1.132000e-01   p_cons 1.508000e-01   p_joint 2.572000e-01

Joint ci ratio: 6.682306e-02	ci left: 1.418725e-01	ci right 1.517304e-01	k: 2935	n:20000
Cons ci ratio: 6.277616e-02	ci left: 1.580039e-01	ci right 1.682942e-01	k: 3262	n:20000
KS ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
LMCD1   20000 perm   4 sec   (5664 perm/sec)   p_kst 1.098000e-01   p_cons 1.631000e-01   p_joint 1.467500e-01

Outputting figure to mutsig2_images.part000000000097/LMCD1.4_1122_20000_0.1098_0.1631_0.14675.png
                gene_name: LMCD1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 42 percent done.
LMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
Cons ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
KS ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
LMOD1   10000 perm   2 sec   (5720 perm/sec)   p_kst 6.614000e-01   p_cons 2.255000e-01   p_joint 4.529000e-01

Outputting figure to mutsig2_images.part000000000097/LMOD1.4_1815_10000_0.6614_0.2255_0.4529.png
                gene_name: LMOD1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
LMX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
Cons ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
KS ci ratio: 2.645772e-02	ci left: 6.778079e-01	ci right 6.960831e-01	k: 6870	n:10000
LMX1B   10000 perm   2 sec   (5962 perm/sec)   p_kst 6.870000e-01   p_cons 4.548000e-01   p_joint 8.667000e-01

Outputting figure to mutsig2_images.part000000000097/LMX1B.4_1274_10000_0.687_0.4548_0.8667.png
                gene_name: LMX1B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 46 percent done.
LNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
Cons ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
KS ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
LNX1   10000 perm   2 sec   (5503 perm/sec)   p_kst 8.919000e-01   p_cons 3.623000e-01   p_joint 6.706000e-01

Outputting figure to mutsig2_images.part000000000097/LNX1.4_2323_10000_0.8919_0.3623_0.6706.png
                gene_name: LNX1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 47 percent done.
LILRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
Cons ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
KS ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
LILRA4   10000 perm   2 sec   (6009 perm/sec)   p_kst 7.358000e-01   p_cons 3.598000e-01   p_joint 7.877000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA4.3_1532_10000_0.7358_0.3598_0.7877.png
                gene_name: LILRA4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 49 percent done.
LINGO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
LINGO1   10000 perm   2 sec   (6065 perm/sec)   p_kst 5.830000e-02   p_cons 6.750000e-01   p_joint 1.495000e-01

Joint ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
Cons ci ratio: 1.934041e-02	ci left: 6.659965e-01	ci right 6.790533e-01	k: 13451	n:20000
KS ci ratio: 1.102495e-01	ci left: 5.616335e-02	ci right 6.276545e-02	k: 1188	n:20000
LINGO1   20000 perm   4 sec   (5395 perm/sec)   p_kst 5.940000e-02   p_cons 6.725500e-01   p_joint 5.995000e-02

Joint ci ratio: 6.677581e-02	ci left: 9.958234e-02	ci right 1.064948e-01	k: 3090	n:30000
Cons ci ratio: 1.578619e-02	ci left: 6.673571e-01	ci right 6.780095e-01	k: 20181	n:30000
KS ci ratio: 8.992521e-02	ci left: 5.688186e-02	ci right 6.227049e-02	k: 1786	n:30000
LINGO1   30000 perm   6 sec   (5120 perm/sec)   p_kst 5.953333e-02   p_cons 6.727000e-01   p_joint 1.030000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO1.3_1871_30000_0.059533_0.6727_0.103.png
                gene_name: LINGO1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
LINS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
Cons ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
KS ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
LINS1   10000 perm   2 sec   (5680 perm/sec)   p_kst 2.745000e-01   p_cons 1.547000e-01   p_joint 2.783000e-01

Outputting figure to mutsig2_images.part000000000097/LINS1.3_2298_10000_0.2745_0.1547_0.2783.png
                gene_name: LINS1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 53 percent done.
LIPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
Cons ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
KS ci ratio: 8.407617e-03	ci left: 9.518996e-01	ci right 9.600321e-01	k: 9561	n:10000
LIPF   10000 perm   2 sec   (6631 perm/sec)   p_kst 9.561000e-01   p_cons 1.270000e-02   p_joint 1.086000e-01

Joint ci ratio: 8.808395e-02	ci left: 8.611760e-02	ci right 9.410203e-02	k: 1801	n:20000
Cons ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
KS ci ratio: 5.853367e-03	ci left: 9.544573e-01	ci right 9.601088e-01	k: 19147	n:20000
LIPF   20000 perm   3 sec   (5876 perm/sec)   p_kst 9.573500e-01   p_cons 1.320000e-02   p_joint 9.005000e-02

Joint ci ratio: 7.850385e-02	ci left: 7.371311e-02	ci right 7.976916e-02	k: 2301	n:30000
Cons ci ratio: 1.765505e-01	ci left: 1.473800e-02	ci right 1.762346e-02	k: 484	n:30000
KS ci ratio: 4.796968e-03	ci left: 9.546773e-01	ci right 9.593003e-01	k: 28711	n:30000
LIPF   30000 perm   5 sec   (5603 perm/sec)   p_kst 9.570333e-01   p_cons 1.613333e-02   p_joint 7.670000e-02

Joint ci ratio: 6.962574e-02	ci left: 7.086282e-02	ci right 7.599931e-02	k: 2936	n:40000
Cons ci ratio: 1.515535e-01	ci left: 1.520211e-02	ci right 1.771879e-02	k: 657	n:40000
KS ci ratio: 4.143014e-03	ci left: 9.552216e-01	ci right 9.592117e-01	k: 38290	n:40000
LIPF   40000 perm   7 sec   (5413 perm/sec)   p_kst 9.572500e-01   p_cons 1.642500e-02   p_joint 7.340000e-02

Joint ci ratio: 6.715391e-02	ci left: 6.165349e-02	ci right 6.595732e-02	k: 3189	n:50000
Cons ci ratio: 1.360170e-01	ci left: 1.522757e-02	ci right 1.746909e-02	k: 816	n:50000
KS ci ratio: 3.700465e-03	ci left: 9.555523e-01	ci right 9.591144e-01	k: 47868	n:50000
LIPF   50000 perm   10 sec   (5258 perm/sec)   p_kst 9.573600e-01   p_cons 1.632000e-02   p_joint 6.378000e-02

Joint ci ratio: 5.967104e-02	ci left: 6.509426e-02	ci right 6.911440e-02	k: 4025	n:60000
Cons ci ratio: 1.246453e-01	ci left: 1.520497e-02	ci right 1.724221e-02	k: 972	n:60000
KS ci ratio: 3.376283e-03	ci left: 9.557535e-01	ci right 9.590021e-01	k: 57444	n:60000
LIPF   60000 perm   12 sec   (5131 perm/sec)   p_kst 9.574000e-01   p_cons 1.620000e-02   p_joint 6.708333e-02

Joint ci ratio: 5.255376e-02	ci left: 7.169031e-02	ci right 7.557369e-02	k: 5153	n:70000
Cons ci ratio: 1.165615e-01	ci left: 1.497244e-02	ci right 1.683943e-02	k: 1112	n:70000
KS ci ratio: 3.142140e-03	ci left: 9.554420e-01	ci right 9.584628e-01	k: 66988	n:70000
LIPF   70000 perm   14 sec   (5011 perm/sec)   p_kst 9.569714e-01   p_cons 1.588571e-02   p_joint 7.361429e-02

Joint ci ratio: 4.721576e-02	ci left: 7.744899e-02	ci right 8.120658e-02	k: 6345	n:80000
Cons ci ratio: 1.097368e-01	ci left: 1.483776e-02	ci right 1.657262e-02	k: 1255	n:80000
KS ci ratio: 2.938579e-03	ci left: 9.555587e-01	ci right 9.583831e-01	k: 76559	n:80000
LIPF   80000 perm   16 sec   (4905 perm/sec)   p_kst 9.569875e-01   p_cons 1.568750e-02   p_joint 7.931250e-02

Joint ci ratio: 5.194461e-02	ci left: 5.796318e-02	ci right 6.106529e-02	k: 5355	n:90000
Cons ci ratio: 1.038349e-01	ci left: 1.477882e-02	ci right 1.640817e-02	k: 1402	n:90000
KS ci ratio: 2.764449e-03	ci left: 9.558234e-01	ci right 9.584803e-01	k: 86145	n:90000
LIPF   90000 perm   19 sec   (4808 perm/sec)   p_kst 9.571667e-01   p_cons 1.557778e-02   p_joint 5.950000e-02

Joint ci ratio: 5.158669e-02	ci left: 5.318002e-02	ci right 5.600589e-02	k: 5458	n:100000
Cons ci ratio: 9.777279e-02	ci left: 1.504594e-02	ci right 1.660233e-02	k: 1581	n:100000
KS ci ratio: 2.621812e-03	ci left: 9.559170e-01	ci right 9.584364e-01	k: 95719	n:100000
LIPF   100000 perm   21 sec   (4713 perm/sec)   p_kst 9.571900e-01   p_cons 1.581000e-02   p_joint 5.458000e-02

Outputting figure to mutsig2_images.part000000000097/LIPF.3_1233_100000_0.95719_0.01581_0.05458.png
                gene_name: LIPF
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 54 percent done.
LIPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
Cons ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
LIPH   10000 perm   2 sec   (6259 perm/sec)   p_kst 7.139000e-01   p_cons 2.425000e-01   p_joint 4.343000e-01

Outputting figure to mutsig2_images.part000000000097/LIPH.3_1396_10000_0.7139_0.2425_0.4343.png
                gene_name: LIPH
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 56 percent done.
LMBR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
LMBR1L   10000 perm   2 sec   (6041 perm/sec)   p_kst 8.096000e-01   p_cons 9.108000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMBR1L.3_1538_10000_0.8096_0.9108_1.png
                gene_name: LMBR1L
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
LMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
LMO2   10000 perm   2 sec   (6554 perm/sec)   p_kst 3.794000e-01   p_cons 6.480000e-02   p_joint 6.137000e-01

Joint ci ratio: 1.786521e-02	ci left: 7.001344e-01	ci right 7.128055e-01	k: 14130	n:20000
Cons ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
KS ci ratio: 3.553413e-02	ci left: 3.715222e-01	ci right 3.850133e-01	k: 7565	n:20000
LMO2   20000 perm   3 sec   (5831 perm/sec)   p_kst 3.782500e-01   p_cons 6.420000e-02   p_joint 7.065000e-01

Joint ci ratio: 1.457880e-02	ci left: 7.015452e-01	ci right 7.118814e-01	k: 21202	n:30000
Cons ci ratio: 8.657410e-02	ci left: 6.119075e-02	ci right 6.676073e-02	k: 1918	n:30000
KS ci ratio: 2.915582e-02	ci left: 3.704812e-01	ci right 3.814762e-01	k: 11279	n:30000
LMO2   30000 perm   5 sec   (5555 perm/sec)   p_kst 3.759667e-01   p_cons 6.393333e-02   p_joint 7.067333e-01

Outputting figure to mutsig2_images.part000000000097/LMO2.3_700_30000_0.37597_0.063933_0.70673.png
                gene_name: LMO2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 59 percent done.
LMTK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
Cons ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
KS ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
LMTK3   10000 perm   2 sec   (5379 perm/sec)   p_kst 6.466000e-01   p_cons 2.640000e-01   p_joint 5.553000e-01

Outputting figure to mutsig2_images.part000000000097/LMTK3.3_4534_10000_0.6466_0.264_0.5553.png
                gene_name: LMTK3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 61 percent done.
LOC402644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
Cons ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
KS ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
LOC402644   10000 perm   1 sec   (6853 perm/sec)   p_kst 2.457000e-01   p_cons 9.471000e-01   p_joint 3.130000e-01

Outputting figure to mutsig2_images.part000000000097/LOC402644.3_481_10000_0.2457_0.9471_0.313.png
                gene_name: LOC402644
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 63 percent done.
LIMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
Cons ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
KS ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
LIMD1   10000 perm   2 sec   (6147 perm/sec)   p_kst 5.249000e-01   p_cons 2.524000e-01   p_joint 7.288000e-01

Outputting figure to mutsig2_images.part000000000097/LIMD1.2_2063_10000_0.5249_0.2524_0.7288.png
                gene_name: LIMD1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 64 percent done.
LIN37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.053554e-02	ci left: 9.276122e-01	ci right 9.375340e-01	k: 9327	n:10000
KS ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
LIN37   10000 perm   1 sec   (7128 perm/sec)   p_kst 3.431000e-01   p_cons 9.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN37.2_777_10000_0.3431_0.9327_1.png
                gene_name: LIN37
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
LIN52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
Cons ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
KS ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
LIN52   10000 perm   1 sec   (7441 perm/sec)   p_kst 5.300000e-02   p_cons 9.466000e-01   p_joint 1.247000e-01

Joint ci ratio: 3.450649e-02	ci left: 3.853747e-01	ci right 3.989567e-01	k: 7843	n:20000
Cons ci ratio: 6.715121e-03	ci left: 9.413394e-01	ci right 9.477306e-01	k: 18892	n:20000
KS ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
LIN52   20000 perm   3 sec   (6441 perm/sec)   p_kst 5.575000e-02   p_cons 9.446000e-01   p_joint 3.921500e-01

Joint ci ratio: 5.925686e-02	ci left: 1.235150e-01	ci right 1.310907e-01	k: 3818	n:30000
Cons ci ratio: 5.461263e-03	ci left: 9.423601e-01	ci right 9.475533e-01	k: 28350	n:30000
KS ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
LIN52   30000 perm   5 sec   (6059 perm/sec)   p_kst 5.423333e-02   p_cons 9.450000e-01   p_joint 1.272667e-01

Outputting figure to mutsig2_images.part000000000097/LIN52.2_375_30000_0.054233_0.945_0.12727.png
                gene_name: LIN52
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 68 percent done.
LIN54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
KS ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
LIN54   10000 perm   2 sec   (6055 perm/sec)   p_kst 6.079000e-01   p_cons 5.263000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN54.2_2298_10000_0.6079_0.5263_1.png
                gene_name: LIN54
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
LIN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
KS ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
LIN7A   10000 perm   1 sec   (6864 perm/sec)   p_kst 5.291000e-01   p_cons 7.757000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN7A.2_722_10000_0.5291_0.7757_1.png
                gene_name: LIN7A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
LIN7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
KS ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
LIN7C   10000 perm   1 sec   (7142 perm/sec)   p_kst 8.548000e-01   p_cons 8.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN7C.2_614_10000_0.8548_0.8305_1.png
                gene_name: LIN7C
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
LIPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
LIPA   10000 perm   2 sec   (6530 perm/sec)   p_kst 1.773000e-01   p_cons 8.553000e-01   p_joint 5.397000e-01

Outputting figure to mutsig2_images.part000000000097/LIPA.2_1236_10000_0.1773_0.8553_0.5397.png
                gene_name: LIPA
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
LIPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
Cons ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
KS ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
LIPE   10000 perm   2 sec   (5630 perm/sec)   p_kst 4.831000e-01   p_cons 7.534000e-01   p_joint 7.163000e-01

Outputting figure to mutsig2_images.part000000000097/LIPE.2_3271_10000_0.4831_0.7534_0.7163.png
                gene_name: LIPE
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 76 percent done.
LIPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
Cons ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
KS ci ratio: 2.178682e-02	ci left: 7.555514e-01	ci right 7.722946e-01	k: 7640	n:10000
LIPG   10000 perm   2 sec   (6464 perm/sec)   p_kst 7.640000e-01   p_cons 2.366000e-01   p_joint 9.111000e-01

Outputting figure to mutsig2_images.part000000000097/LIPG.2_1543_10000_0.764_0.2366_0.9111.png
                gene_name: LIPG
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
LIX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
Cons ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
LIX1   10000 perm   1 sec   (6683 perm/sec)   p_kst 3.093000e-01   p_cons 4.701000e-01   p_joint 6.511000e-01

Outputting figure to mutsig2_images.part000000000097/LIX1.2_873_10000_0.3093_0.4701_0.6511.png
                gene_name: LIX1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 80 percent done.
LIX1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
LIX1L   10000 perm   1 sec   (6844 perm/sec)   p_kst 4.000000e-01   p_cons 4.593000e-01   p_joint 3.437000e-01

Outputting figure to mutsig2_images.part000000000097/LIX1L.2_1038_10000_0.4_0.4593_0.3437.png
                gene_name: LIX1L
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 81 percent done.
LLGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
KS ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
LLGL2   10000 perm   2 sec   (5689 perm/sec)   p_kst 1.035000e-01   p_cons 2.240000e-02   p_joint 7.900000e-03

Joint ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
Cons ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
KS ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
LLGL2   20000 perm   4 sec   (5062 perm/sec)   p_kst 1.041000e-01   p_cons 2.275000e-02   p_joint 1.265000e-02

Joint ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
Cons ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
KS ci ratio: 6.605151e-02	ci left: 1.015856e-01	ci right 1.085577e-01	k: 3151	n:30000
LLGL2   30000 perm   6 sec   (4839 perm/sec)   p_kst 1.050333e-01   p_cons 2.190000e-02   p_joint 1.256667e-02

Joint ci ratio: 1.756349e-01	ci left: 1.121896e-02	ci right 1.340270e-02	k: 491	n:40000
Cons ci ratio: 1.312915e-01	ci left: 2.036703e-02	ci right 2.325297e-02	k: 871	n:40000
KS ci ratio: 5.765314e-02	ci left: 1.006053e-01	ci right 1.066024e-01	k: 4143	n:40000
LLGL2   40000 perm   9 sec   (4696 perm/sec)   p_kst 1.035750e-01   p_cons 2.177500e-02   p_joint 1.227500e-02

Joint ci ratio: 1.588010e-01	ci left: 1.108322e-02	ci right 1.301405e-02	k: 601	n:50000
Cons ci ratio: 1.170473e-01	ci left: 2.065439e-02	ci right 2.324153e-02	k: 1096	n:50000
KS ci ratio: 5.171153e-02	ci left: 1.004081e-01	ci right 1.057580e-01	k: 5153	n:50000
LLGL2   50000 perm   11 sec   (4577 perm/sec)   p_kst 1.030600e-01   p_cons 2.192000e-02   p_joint 1.202000e-02

Joint ci ratio: 1.812749e-01	ci left: 7.032054e-03	ci right 8.449517e-03	k: 463	n:60000
Cons ci ratio: 1.065352e-01	ci left: 2.088983e-02	ci right 2.325671e-02	k: 1323	n:60000
KS ci ratio: 4.732468e-02	ci left: 1.001830e-01	ci right 1.050555e-01	k: 6156	n:60000
LLGL2   60000 perm   13 sec   (4478 perm/sec)   p_kst 1.026000e-01   p_cons 2.205000e-02   p_joint 7.716667e-03

Joint ci ratio: 1.338745e-01	ci left: 1.128939e-02	ci right 1.292286e-02	k: 846	n:70000
Cons ci ratio: 9.862169e-02	ci left: 2.098184e-02	ci right 2.317231e-02	k: 1544	n:70000
KS ci ratio: 4.385217e-02	ci left: 1.002059e-01	ci right 1.047128e-01	k: 7171	n:70000
LLGL2   70000 perm   16 sec   (4385 perm/sec)   p_kst 1.024429e-01   p_cons 2.205714e-02   p_joint 1.208571e-02

Joint ci ratio: 1.894171e-01	ci left: 4.820530e-03	ci right 5.840849e-03	k: 425	n:80000
Cons ci ratio: 9.189930e-02	ci left: 2.121459e-02	ci right 2.327026e-02	k: 1778	n:80000
KS ci ratio: 4.101043e-02	ci left: 1.003940e-01	ci right 1.046098e-01	k: 8199	n:80000
LLGL2   80000 perm   19 sec   (4292 perm/sec)   p_kst 1.024875e-01   p_cons 2.222500e-02   p_joint 5.312500e-03

Joint ci ratio: 1.780714e-01	ci left: 4.878552e-03	ci right 5.842641e-03	k: 481	n:90000
Cons ci ratio: 8.651928e-02	ci left: 2.133431e-02	ci right 2.327443e-02	k: 2006	n:90000
KS ci ratio: 3.875402e-02	ci left: 1.000961e-01	ci right 1.040629e-01	k: 9186	n:90000
LLGL2   90000 perm   21 sec   (4204 perm/sec)   p_kst 1.020667e-01   p_cons 2.228889e-02   p_joint 5.344444e-03

Joint ci ratio: 1.112195e-01	ci left: 1.158713e-02	ci right 1.296138e-02	k: 1226	n:100000
Cons ci ratio: 8.187314e-02	ci left: 2.149170e-02	ci right 2.333615e-02	k: 2240	n:100000
KS ci ratio: 3.674281e-02	ci left: 1.003093e-01	ci right 1.040738e-01	k: 10218	n:100000
LLGL2   100000 perm   24 sec   (4128 perm/sec)   p_kst 1.021800e-01   p_cons 2.240000e-02   p_joint 1.226000e-02

Joint ci ratio: 1.116047e-01	ci left: 1.047155e-02	ci right 1.171806e-02	k: 1219	n:110000
Cons ci ratio: 7.801608e-02	ci left: 2.156032e-02	ci right 2.331953e-02	k: 2467	n:110000
KS ci ratio: 3.507097e-02	ci left: 1.001994e-01	ci right 1.037852e-01	k: 11218	n:110000
LLGL2   110000 perm   27 sec   (4056 perm/sec)   p_kst 1.019818e-01   p_cons 2.242727e-02   p_joint 1.108182e-02

Joint ci ratio: 1.065264e-01	ci left: 1.056357e-02	ci right 1.176023e-02	k: 1338	n:120000
Cons ci ratio: 7.484222e-02	ci left: 2.151286e-02	ci right 2.319367e-02	k: 2681	n:120000
KS ci ratio: 3.355488e-02	ci left: 1.004006e-01	ci right 1.038353e-01	k: 12253	n:120000
LLGL2   120000 perm   30 sec   (3992 perm/sec)   p_kst 1.021083e-01   p_cons 2.234167e-02   p_joint 1.115000e-02

Joint ci ratio: 1.029078e-01	ci left: 1.047008e-02	ci right 1.161342e-02	k: 1434	n:130000
Cons ci ratio: 7.216694e-02	ci left: 2.139081e-02	ci right 2.299983e-02	k: 2884	n:130000
KS ci ratio: 3.223737e-02	ci left: 1.004744e-01	ci right 1.037741e-01	k: 13275	n:130000
LLGL2   130000 perm   33 sec   (3934 perm/sec)   p_kst 1.021154e-01   p_cons 2.218462e-02   p_joint 1.103077e-02

Joint ci ratio: 9.914448e-02	ci left: 1.049505e-02	ci right 1.159677e-02	k: 1545	n:140000
Cons ci ratio: 6.942676e-02	ci left: 2.149074e-02	ci right 2.304342e-02	k: 3116	n:140000
KS ci ratio: 3.105410e-02	ci left: 1.005967e-01	ci right 1.037770e-01	k: 14305	n:140000
LLGL2   140000 perm   36 sec   (3879 perm/sec)   p_kst 1.021786e-01   p_cons 2.225714e-02   p_joint 1.103571e-02

Outputting figure to mutsig2_images.part000000000097/LLGL2.2_3226_140000_0.10218_0.022257_0.011036.png
                gene_name: LLGL2
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.012 

Current progress: 83 percent done.
LMAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
LMAN1   10000 perm   2 sec   (6460 perm/sec)   p_kst 7.638000e-01   p_cons 2.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMAN1.2_1585_10000_0.7638_0.2541_1.png
                gene_name: LMAN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
LMF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
LMF2   10000 perm   2 sec   (6381 perm/sec)   p_kst 4.912000e-01   p_cons 3.387000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000097/LMF2.2_2180_10000_0.4912_0.3387_0.8048.png
                gene_name: LMF2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 86 percent done.
LMLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
KS ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
LMLN   10000 perm   2 sec   (6080 perm/sec)   p_kst 6.509000e-01   p_cons 3.578000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000097/LMLN.2_2147_10000_0.6509_0.3578_0.6374.png
                gene_name: LMLN
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 88 percent done.
LMNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
Cons ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
KS ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
LMNB1   10000 perm   2 sec   (6270 perm/sec)   p_kst 2.509000e-01   p_cons 4.177000e-01   p_joint 5.529000e-01

Outputting figure to mutsig2_images.part000000000097/LMNB1.2_1805_10000_0.2509_0.4177_0.5529.png
                gene_name: LMNB1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 90 percent done.
LMNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
Cons ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
KS ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
LMNB2   10000 perm   2 sec   (6308 perm/sec)   p_kst 2.412000e-01   p_cons 2.042000e-01   p_joint 1.913000e-01

Outputting figure to mutsig2_images.part000000000097/LMNB2.2_1851_10000_0.2412_0.2042_0.1913.png
                gene_name: LMNB2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
LNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.528325e-03	ci left: 9.697378e-01	ci right 9.761827e-01	k: 9731	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
LNX2   10000 perm   2 sec   (6060 perm/sec)   p_kst 9.134000e-01   p_cons 7.470000e-01   p_joint 9.731000e-01

Outputting figure to mutsig2_images.part000000000097/LNX2.2_2109_10000_0.9134_0.747_0.9731.png
                gene_name: LNX2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
LOC150786
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
LOC150786   10000 perm   1 sec   (6902 perm/sec)   p_kst 2.090000e-02   p_cons 9.821000e-01   p_joint 6.400000e-02

Joint ci ratio: 6.029774e-02	ci left: 1.691638e-01	ci right 1.797311e-01	k: 3488	n:20000
Cons ci ratio: 3.984476e-03	ci left: 9.777540e-01	ci right 9.817048e-01	k: 19596	n:20000
KS ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
LOC150786   20000 perm   3 sec   (6091 perm/sec)   p_kst 2.005000e-02   p_cons 9.798000e-01   p_joint 1.744000e-01

Joint ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
Cons ci ratio: 3.273887e-03	ci left: 9.778672e-01	ci right 9.811056e-01	k: 29386	n:30000
KS ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
LOC150786   30000 perm   5 sec   (5782 perm/sec)   p_kst 2.036667e-02   p_cons 9.795333e-01   p_joint 6.946667e-02

Joint ci ratio: 8.037673e-02	ci left: 5.386470e-02	ci right 5.840000e-02	k: 2244	n:40000
Cons ci ratio: 3.263228e-03	ci left: 9.714158e-01	ci right 9.746150e-01	k: 38922	n:40000
KS ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
LOC150786   40000 perm   7 sec   (5567 perm/sec)   p_kst 1.977500e-02   p_cons 9.730500e-01   p_joint 5.610000e-02

Joint ci ratio: 5.937668e-02	ci left: 7.779431e-02	ci right 8.257457e-02	k: 4008	n:50000
Cons ci ratio: 2.941198e-03	ci left: 9.711724e-01	ci right 9.740524e-01	k: 48632	n:50000
KS ci ratio: 1.239209e-01	ci left: 1.840290e-02	ci right 2.085332e-02	k: 980	n:50000
LOC150786   50000 perm   10 sec   (4965 perm/sec)   p_kst 1.960000e-02   p_cons 9.726400e-01   p_joint 8.016000e-02

Joint ci ratio: 6.290685e-02	ci left: 5.886803e-02	ci right 6.270792e-02	k: 3646	n:60000
Cons ci ratio: 2.685965e-03	ci left: 9.712794e-01	ci right 9.739079e-01	k: 58357	n:60000
KS ci ratio: 1.147861e-01	ci left: 1.797116e-02	ci right 2.017570e-02	k: 1143	n:60000
LOC150786   60000 perm   12 sec   (4877 perm/sec)   p_kst 1.905000e-02   p_cons 9.726167e-01   p_joint 6.076667e-02

Joint ci ratio: 5.914739e-02	ci left: 5.729384e-02	ci right 6.079997e-02	k: 4132	n:70000
Cons ci ratio: 2.489400e-03	ci left: 9.713200e-01	ci right 9.737549e-01	k: 68079	n:70000
KS ci ratio: 1.053761e-01	ci left: 1.836323e-02	ci right 2.041974e-02	k: 1356	n:70000
LOC150786   70000 perm   15 sec   (4807 perm/sec)   p_kst 1.937143e-02   p_cons 9.725571e-01   p_joint 5.902857e-02

Joint ci ratio: 5.525547e-02	ci left: 5.754972e-02	ci right 6.083233e-02	k: 4734	n:80000
Cons ci ratio: 2.040230e-03	ci left: 9.777780e-01	ci right 9.797871e-01	k: 78304	n:80000
KS ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
LOC150786   80000 perm   17 sec   (4736 perm/sec)   p_kst 1.926250e-02   p_cons 9.788000e-01   p_joint 5.917500e-02

Outputting figure to mutsig2_images.part000000000097/LOC150786.2_769_80000_0.019262_0.9788_0.059175.png
                gene_name: LOC150786
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 95 percent done.
LOC153328
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
LOC153328   10000 perm   1 sec   (7431 perm/sec)   p_kst 3.170000e-02   p_cons 6.369000e-01   p_joint 3.391000e-01

Joint ci ratio: 3.120153e-02	ci left: 4.341528e-01	ci right 4.479643e-01	k: 8821	n:20000
Cons ci ratio: 2.093258e-02	ci left: 6.300904e-01	ci right 6.434698e-01	k: 12736	n:20000
KS ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
LOC153328   20000 perm   3 sec   (6494 perm/sec)   p_kst 3.160000e-02   p_cons 6.368000e-01   p_joint 4.410500e-01

Joint ci ratio: 3.005872e-02	ci left: 3.563262e-01	ci right 3.672339e-01	k: 10853	n:30000
Cons ci ratio: 1.712244e-02	ci left: 6.304923e-01	ci right 6.414147e-01	k: 19079	n:30000
KS ci ratio: 1.236785e-01	ci left: 3.039280e-02	ci right 3.443175e-02	k: 971	n:30000
LOC153328   30000 perm   5 sec   (6128 perm/sec)   p_kst 3.236667e-02   p_cons 6.359667e-01   p_joint 3.617667e-01

Joint ci ratio: 2.190562e-02	ci left: 4.397219e-01	ci right 4.494861e-01	k: 17784	n:40000
Cons ci ratio: 1.481871e-02	ci left: 6.315383e-01	ci right 6.409919e-01	k: 25451	n:40000
KS ci ratio: 1.070664e-01	ci left: 3.068636e-02	ci right 3.418195e-02	k: 1296	n:40000
LOC153328   40000 perm   7 sec   (5899 perm/sec)   p_kst 3.240000e-02   p_cons 6.362750e-01   p_joint 4.446000e-01

Joint ci ratio: 1.955749e-02	ci left: 4.411368e-01	ci right 4.498696e-01	k: 22275	n:50000
Cons ci ratio: 1.321812e-02	ci left: 6.333086e-01	ci right 6.417555e-01	k: 31877	n:50000
KS ci ratio: 9.543683e-02	ci left: 3.108013e-02	ci right 3.421444e-02	k: 1631	n:50000
LOC153328   50000 perm   9 sec   (5678 perm/sec)   p_kst 3.262000e-02   p_cons 6.375400e-01   p_joint 4.455000e-01

Outputting figure to mutsig2_images.part000000000097/LOC153328.2_494_50000_0.03262_0.63754_0.4455.png
                gene_name: LOC153328
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 97 percent done.
LOC200726
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
Cons ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
LOC200726   10000 perm   1 sec   (6869 perm/sec)   p_kst 6.039000e-01   p_cons 6.492000e-01   p_joint 9.789000e-01

Outputting figure to mutsig2_images.part000000000097/LOC200726.2_554_10000_0.6039_0.6492_0.9789.png
                gene_name: LOC200726
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
LOC286238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
Cons ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
LOC286238   10000 perm   1 sec   (7021 perm/sec)   p_kst 8.500000e-02   p_cons 5.300000e-03   p_joint 5.400000e-03

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
KS ci ratio: 8.937081e-02	ci left: 8.381499e-02	ci right 9.170534e-02	k: 1754	n:20000
LOC286238   20000 perm   3 sec   (6188 perm/sec)   p_kst 8.770000e-02   p_cons 5.850000e-03   p_joint 5.400000e-03

Joint ci ratio: 2.361634e-01	ci left: 8.025163e-03	ci right 1.020483e-02	k: 272	n:30000
Cons ci ratio: 2.849935e-01	ci left: 5.374137e-03	ci right 7.190140e-03	k: 187	n:30000
KS ci ratio: 7.342332e-02	ci left: 8.357201e-02	ci right 8.997494e-02	k: 2602	n:30000
LOC286238   30000 perm   5 sec   (5887 perm/sec)   p_kst 8.673333e-02   p_cons 6.233333e-03   p_joint 9.066667e-03

Joint ci ratio: 1.655371e-01	ci left: 1.267965e-02	ci right 1.499172e-02	k: 552	n:40000
Cons ci ratio: 2.364353e-01	ci left: 6.018107e-03	ci right 7.654721e-03	k: 272	n:40000
KS ci ratio: 6.426488e-02	ci left: 8.235861e-02	ci right 8.785180e-02	k: 3403	n:40000
LOC286238   40000 perm   7 sec   (5690 perm/sec)   p_kst 8.507500e-02   p_cons 6.800000e-03   p_joint 1.380000e-02

Joint ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
Cons ci ratio: 2.160643e-01	ci left: 5.833321e-03	ci right 7.264875e-03	k: 326	n:50000
KS ci ratio: 5.754692e-02	ci left: 8.247099e-02	ci right 8.737732e-02	k: 4245	n:50000
LOC286238   50000 perm   9 sec   (5524 perm/sec)   p_kst 8.490000e-02   p_cons 6.520000e-03   p_joint 9.460000e-03

Joint ci ratio: 1.455166e-01	ci left: 1.107982e-02	ci right 1.283453e-02	k: 716	n:60000
Cons ci ratio: 1.924588e-01	ci left: 6.205638e-03	ci right 7.542730e-03	k: 411	n:60000
KS ci ratio: 5.250596e-02	ci left: 8.276383e-02	ci right 8.724307e-02	k: 5099	n:60000
LOC286238   60000 perm   11 sec   (5386 perm/sec)   p_kst 8.498333e-02   p_cons 6.850000e-03   p_joint 1.193333e-02

Joint ci ratio: 1.281740e-01	ci left: 1.233994e-02	ci right 1.404362e-02	k: 922	n:70000
Cons ci ratio: 1.770119e-01	ci left: 6.341109e-03	ci right 7.586002e-03	k: 486	n:70000
KS ci ratio: 4.870062e-02	ci left: 8.264746e-02	ci right 8.678703e-02	k: 5929	n:70000
LOC286238   70000 perm   13 sec   (5254 perm/sec)   p_kst 8.470000e-02   p_cons 6.942857e-03   p_joint 1.317143e-02

Joint ci ratio: 1.205260e-01	ci left: 1.226290e-02	ci right 1.384771e-02	k: 1043	n:80000
Cons ci ratio: 1.668786e-01	ci left: 6.278158e-03	ci right 7.433040e-03	k: 547	n:80000
KS ci ratio: 4.571816e-02	ci left: 8.223513e-02	ci right 8.609509e-02	k: 6732	n:80000
LOC286238   80000 perm   16 sec   (5137 perm/sec)   p_kst 8.415000e-02   p_cons 6.837500e-03   p_joint 1.303750e-02

Joint ci ratio: 9.120799e-02	ci left: 1.919305e-02	ci right 2.103806e-02	k: 1809	n:90000
Cons ci ratio: 1.552563e-01	ci left: 6.487054e-03	ci right 7.589523e-03	k: 632	n:90000
KS ci ratio: 4.324589e-02	ci left: 8.184358e-02	ci right 8.547219e-02	k: 7528	n:90000
LOC286238   90000 perm   18 sec   (4976 perm/sec)   p_kst 8.364444e-02   p_cons 7.022222e-03   p_joint 2.010000e-02

Joint ci ratio: 8.663996e-02	ci left: 1.919017e-02	ci right 2.093783e-02	k: 2005	n:100000
Cons ci ratio: 1.467994e-01	ci left: 6.560039e-03	ci right 7.608857e-03	k: 707	n:100000
KS ci ratio: 4.099608e-02	ci left: 8.205009e-02	ci right 8.549410e-02	k: 8376	n:100000
LOC286238   100000 perm   21 sec   (4825 perm/sec)   p_kst 8.376000e-02   p_cons 7.070000e-03   p_joint 2.005000e-02

Joint ci ratio: 9.054250e-02	ci left: 1.599538e-02	ci right 1.752116e-02	k: 1842	n:110000
Cons ci ratio: 1.392315e-01	ci left: 6.656190e-03	ci right 7.660967e-03	k: 786	n:110000
KS ci ratio: 3.903210e-02	ci left: 8.234919e-02	ci right 8.563642e-02	k: 9238	n:110000
LOC286238   110000 perm   23 sec   (4739 perm/sec)   p_kst 8.398182e-02   p_cons 7.145455e-03   p_joint 1.674545e-02

Joint ci ratio: 8.659036e-02	ci left: 1.606405e-02	ci right 1.752610e-02	k: 2014	n:120000
Cons ci ratio: 1.331905e-01	ci left: 6.689124e-03	ci right 7.651591e-03	k: 859	n:120000
KS ci ratio: 3.731971e-02	ci left: 8.262650e-02	ci right 8.577697e-02	k: 10103	n:120000
LOC286238   120000 perm   26 sec   (4657 perm/sec)   p_kst 8.419167e-02   p_cons 7.158333e-03   p_joint 1.678333e-02

Joint ci ratio: 8.326937e-02	ci left: 1.606310e-02	ci right 1.746627e-02	k: 2178	n:130000
Cons ci ratio: 1.283591e-01	ci left: 6.665656e-03	ci right 7.587304e-03	k: 925	n:130000
KS ci ratio: 3.578962e-02	ci left: 8.297061e-02	ci right 8.600180e-02	k: 10982	n:130000
LOC286238   130000 perm   28 sec   (4576 perm/sec)   p_kst 8.447692e-02   p_cons 7.115385e-03   p_joint 1.675385e-02

Joint ci ratio: 8.032076e-02	ci left: 1.605621e-02	ci right 1.740677e-02	k: 2341	n:140000
Cons ci ratio: 1.232075e-01	ci left: 6.736087e-03	ci right 7.627365e-03	k: 1004	n:140000
KS ci ratio: 3.448113e-02	ci left: 8.305519e-02	ci right 8.597633e-02	k: 11831	n:140000
LOC286238   140000 perm   31 sec   (4498 perm/sec)   p_kst 8.450714e-02   p_cons 7.171429e-03   p_joint 1.672143e-02

Joint ci ratio: 7.774367e-02	ci left: 1.601829e-02	ci right 1.732048e-02	k: 2499	n:150000
Cons ci ratio: 1.192411e-01	ci left: 6.726600e-03	ci right 7.585949e-03	k: 1072	n:150000
KS ci ratio: 3.333082e-02	ci left: 8.301778e-02	ci right 8.583831e-02	k: 12663	n:150000
LOC286238   150000 perm   34 sec   (4423 perm/sec)   p_kst 8.442000e-02   p_cons 7.146667e-03   p_joint 1.666000e-02

Joint ci ratio: 7.511284e-02	ci left: 1.610842e-02	ci right 1.737168e-02	k: 2677	n:160000
Cons ci ratio: 1.155836e-01	ci left: 6.724772e-03	ci right 7.555737e-03	k: 1141	n:160000
KS ci ratio: 3.233426e-02	ci left: 8.276933e-02	ci right 8.549577e-02	k: 13460	n:160000
LOC286238   160000 perm   37 sec   (4350 perm/sec)   p_kst 8.412500e-02   p_cons 7.131250e-03   p_joint 1.673125e-02

Joint ci ratio: 7.304497e-02	ci left: 1.604995e-02	ci right 1.727250e-02	k: 2831	n:170000
Cons ci ratio: 1.124304e-01	ci left: 6.700643e-03	ci right 7.504540e-03	k: 1206	n:170000
KS ci ratio: 3.135964e-02	ci left: 8.285494e-02	ci right 8.550044e-02	k: 14309	n:170000
LOC286238   170000 perm   40 sec   (4280 perm/sec)   p_kst 8.417059e-02   p_cons 7.094118e-03   p_joint 1.665294e-02

Joint ci ratio: 7.236865e-02	ci left: 1.545811e-02	ci right 1.662422e-02	k: 2886	n:180000
Cons ci ratio: 1.099581e-01	ci left: 6.625428e-03	ci right 7.401688e-03	k: 1261	n:180000
KS ci ratio: 3.049122e-02	ci left: 8.281627e-02	ci right 8.538603e-02	k: 15137	n:180000
LOC286238   180000 perm   43 sec   (4211 perm/sec)   p_kst 8.409444e-02   p_cons 7.005556e-03   p_joint 1.603333e-02

Joint ci ratio: 7.202066e-02	ci left: 1.479939e-02	ci right 1.591021e-02	k: 2916	n:190000
Cons ci ratio: 1.069491e-01	ci left: 6.645393e-03	ci right 7.401344e-03	k: 1333	n:190000
KS ci ratio: 2.965165e-02	ci left: 8.298647e-02	ci right 8.548939e-02	k: 16004	n:190000
LOC286238   190000 perm   46 sec   (4144 perm/sec)   p_kst 8.423158e-02   p_cons 7.015789e-03   p_joint 1.534737e-02

Joint ci ratio: 7.036630e-02	ci left: 1.474203e-02	ci right 1.582209e-02	k: 3055	n:200000
Cons ci ratio: 1.042490e-01	ci left: 6.653881e-03	ci right 7.390516e-03	k: 1403	n:200000
KS ci ratio: 2.887501e-02	ci left: 8.315542e-02	ci right 8.559664e-02	k: 16874	n:200000
LOC286238   200000 perm   49 sec   (4079 perm/sec)   p_kst 8.437000e-02   p_cons 7.015000e-03   p_joint 1.527500e-02

Joint ci ratio: 7.572455e-02	ci left: 1.212263e-02	ci right 1.308137e-02	k: 2645	n:210000
Cons ci ratio: 1.018131e-01	ci left: 6.652495e-03	ci right 7.370738e-03	k: 1471	n:210000
KS ci ratio: 2.814509e-02	ci left: 8.337055e-02	ci right 8.575522e-02	k: 17757	n:210000
LOC286238   210000 perm   52 sec   (4018 perm/sec)   p_kst 8.455714e-02   p_cons 7.004762e-03   p_joint 1.259524e-02

Joint ci ratio: 7.421434e-02	ci left: 1.205775e-02	ci right 1.299153e-02	k: 2754	n:220000
Cons ci ratio: 9.970352e-02	ci left: 6.629252e-03	ci right 7.329288e-03	k: 1534	n:220000
KS ci ratio: 2.752598e-02	ci left: 8.324160e-02	ci right 8.556937e-02	k: 18568	n:220000
LOC286238   220000 perm   56 sec   (3958 perm/sec)   p_kst 8.440000e-02   p_cons 6.972727e-03   p_joint 1.251818e-02

Outputting figure to mutsig2_images.part000000000097/LOC286238.2_347_220000_0.0844_0.0069727_0.012518.png
                gene_name: LOC286238
               theta_stop: 0.100 
                    nperm: 220000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.0070 
      ci_cons_bounds_left: 0.0066 
     ci_cons_bounds_right: 0.0073 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000097
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 97 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 4422143: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000098> was used as the working directory.
Started at Wed Oct 24 17:58:15 2012
Results reported at Wed Oct 24 21:42:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000098.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000098.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 98  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000098.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13617.03 sec.
    Max Memory :      7329 MB
    Max Swap   :      9761 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
98
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 98
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 98: processing genes 8777 - 8866
Calculating significance of each gene.
Using projection method.
8777	LOC642587	1
8778	LOC645961	1
8779	LOC646498	1
8780	LOC649330	4.521558e-01
8781	LOC653486	1
8782	LOC728819	1
8783	LOC729020	1
8784	LOC729991-MEF2B	1
8785	LOC81691	9.427477e-01
8786	LOH12CR1	1
8787	LONP1	3.805733e-01
8788	LONP2	5.332672e-01
8789	LONRF1	8.206436e-01
8790	LONRF2	8.479423e-01
8791	LONRF3	1
8792	LOX	8.289572e-01
8793	LOXL1	7.240963e-01
8794	LOXL2	9.867619e-01
8795	LOXL3	9.572547e-01
8796	LOXL4	5.032739e-01
8797	LPA	1.925171e-02
8798	LPAR1	7.874936e-01
8799	LPAR2	7.643265e-01
In gene LPAR3 the following bins exceed PROBCAP:
    LUAD-44-6148-TP	categ 6	N = 1070    n = 1	mu =   1.00e-07
8800	LPAR3	7.317618e-02
8801	LPAR4	1
8802	LPAR5	7.356748e-01
8803	LPAR6	6.906178e-01
8804	LPCAT1	7.685180e-01
8805	LPCAT2	7.613686e-01
8806	LPCAT3	1
8807	LPCAT4	1
8808	LPGAT1	6.653111e-01
8809	LPHN1	9.900907e-01
8810	LPHN2	7.182163e-01
8811	LPHN3	1
8812	LPIN1	9.237508e-01
8813	LPIN2	9.159784e-01
8814	LPIN3	9.365451e-01
8815	LPL	1
8816	LPO	7.350222e-01
8817	LPP	3.027702e-02
8818	LPPR1	6.144750e-01
8819	LPPR2	1
8820	LPPR3	6.918275e-01
8821	LPPR4	2.858123e-01
8822	LPPR5	5.767147e-02
8823	LPXN	8.124398e-01
8824	LRAT	6.638290e-01
8825	LRBA	1
8826	LRCH1	4.211093e-01
8827	LRCH2	1
8828	LRCH3	7.565755e-01
8829	LRCH4	1
8830	LRDD	9.918406e-01
8831	LRFN1	1
8832	LRFN2	9.311299e-01
8833	LRFN3	9.817051e-01
8834	LRFN4	1
8835	LRFN5	2.116196e-01
8836	LRG1	1
8837	LRGUK	9.156485e-01
8838	LRIG1	7.694705e-01
8839	LRIG2	8.740210e-01
8840	LRIG3	9.914396e-01
8841	LRIT1	6.896855e-02
8842	LRIT2	3.427527e-02
8843	LRIT3	4.245783e-01
8844	LRMP	5.625259e-01
8845	LRP1	1
8846	LRP10	9.441576e-01
8847	LRP11	1
8848	LRP12	9.384615e-01
8849	LRP1B	9.952687e-01
8850	LRP2	1
8851	LRP2BP	6.455155e-01
8852	LRP3	1
8853	LRP4	9.589402e-01
8854	LRP5	9.999691e-01
8855	LRP5L	1
8856	LRP6	8.375420e-01
8857	LRP8	8.345049e-01
8858	LRPAP1	1
8859	LRPPRC	9.344130e-01
8860	LRRC1	4.917680e-01
8861	LRRC10	1
8862	LRRC14	1
8863	LRRC14B	6.272008e-01
8864	LRRC15	9.785297e-01
8865	LRRC16A	9.874157e-01
8866	LRRC16B	1
Done

Running MutSig 2:
Scatter job 98: processing genes 8777 - 8866
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRP1B
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
LRP1B   10000 perm   8 sec   (1261 perm/sec)   p_kst 6.891000e-01   p_cons 1.790000e-02   p_joint 7.440000e-02

Joint ci ratio: 1.138568e-01	ci left: 5.275592e-02	ci right 5.917394e-02	k: 1118	n:20000
Cons ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
KS ci ratio: 1.888976e-02	ci left: 6.763492e-01	ci right 6.892976e-01	k: 13657	n:20000
LRP1B   20000 perm   18 sec   (1097 perm/sec)   p_kst 6.828500e-01   p_cons 1.790000e-02   p_joint 5.590000e-02

Joint ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
Cons ci ratio: 1.697411e-01	ci left: 1.598253e-02	ci right 1.897863e-02	k: 523	n:30000
KS ci ratio: 1.538978e-02	ci left: 6.785039e-01	ci right 6.890604e-01	k: 20514	n:30000
LRP1B   30000 perm   27 sec   (1125 perm/sec)   p_kst 6.838000e-01   p_cons 1.743333e-02   p_joint 5.126667e-02

Joint ci ratio: 9.811372e-02	ci left: 3.648912e-02	ci right 4.027827e-02	k: 1534	n:40000
Cons ci ratio: 1.468582e-01	ci left: 1.621352e-02	ci right 1.880720e-02	k: 699	n:40000
KS ci ratio: 1.334728e-02	ci left: 6.785901e-01	ci right 6.877333e-01	k: 27327	n:40000
LRP1B   40000 perm   35 sec   (1139 perm/sec)   p_kst 6.831750e-01   p_cons 1.747500e-02   p_joint 3.835000e-02

Joint ci ratio: 8.066550e-02	ci left: 4.327785e-02	ci right 4.693520e-02	k: 2254	n:50000
Cons ci ratio: 1.325151e-01	ci left: 1.605913e-02	ci right 1.835742e-02	k: 859	n:50000
KS ci ratio: 1.188681e-02	ci left: 6.809479e-01	ci right 6.891106e-01	k: 34252	n:50000
LRP1B   50000 perm   44 sec   (1145 perm/sec)   p_kst 6.850400e-01   p_cons 1.718000e-02   p_joint 4.508000e-02

Joint ci ratio: 6.783803e-02	ci left: 5.092552e-02	ci right 5.451789e-02	k: 3162	n:60000
Cons ci ratio: 1.196779e-01	ci left: 1.651438e-02	ci right 1.863265e-02	k: 1053	n:60000
KS ci ratio: 1.083329e-02	ci left: 6.820183e-01	ci right 6.894637e-01	k: 41145	n:60000
LRP1B   60000 perm   52 sec   (1148 perm/sec)   p_kst 6.857500e-01   p_cons 1.755000e-02   p_joint 5.270000e-02

Joint ci ratio: 7.353275e-02	ci left: 3.757785e-02	ci right 4.046052e-02	k: 2730	n:70000
Cons ci ratio: 1.221457e-01	ci left: 1.361362e-02	ci right 1.539838e-02	k: 1014	n:70000
KS ci ratio: 1.002288e-02	ci left: 6.825900e-01	ci right 6.894803e-01	k: 48023	n:70000
LRP1B   70000 perm   61 sec   (1147 perm/sec)   p_kst 6.860429e-01   p_cons 1.448571e-02   p_joint 3.900000e-02

Joint ci ratio: 5.389531e-02	ci left: 6.035091e-02	ci right 6.370594e-02	k: 4961	n:80000
Cons ci ratio: 9.958551e-02	ci left: 1.805298e-02	ci right 1.995713e-02	k: 1519	n:80000
KS ci ratio: 8.389135e-03	ci left: 7.287656e-01	ci right 7.349175e-01	k: 58548	n:80000
LRP1B   80000 perm   70 sec   (1144 perm/sec)   p_kst 7.318500e-01   p_cons 1.898750e-02   p_joint 6.201250e-02

Outputting figure to mutsig2_images.part000000000098/LRP1B.149_14164_80000_0.73185_0.018988_0.062012.png
                gene_name: LRP1B
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 2 percent done.
LRP2
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
LRP2   10000 perm   4 sec   (2501 perm/sec)   p_kst 5.861000e-01   p_cons 2.400000e-03   p_joint 1.150000e-02

Joint ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
Cons ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KS ci ratio: 2.355708e-02	ci left: 5.737248e-01	ci right 5.874518e-01	k: 11612	n:20000
LRP2   20000 perm   9 sec   (2338 perm/sec)   p_kst 5.806000e-01   p_cons 2.250000e-03   p_joint 1.050000e-02

Joint ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
Cons ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
KS ci ratio: 1.932959e-02	ci left: 5.725877e-01	ci right 5.837972e-01	k: 17346	n:30000
LRP2   30000 perm   13 sec   (2271 perm/sec)   p_kst 5.782000e-01   p_cons 2.566667e-03   p_joint 2.476667e-02

Joint ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
Cons ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
KS ci ratio: 1.675896e-02	ci left: 5.727915e-01	ci right 5.824972e-01	k: 23106	n:40000
LRP2   40000 perm   18 sec   (2225 perm/sec)   p_kst 5.776500e-01   p_cons 2.600000e-03   p_joint 2.355000e-02

Joint ci ratio: 1.196957e-01	ci left: 1.974166e-02	ci right 2.227438e-02	k: 1049	n:50000
Cons ci ratio: 3.433561e-01	ci left: 2.154454e-03	ci right 3.064827e-03	k: 129	n:50000
KS ci ratio: 1.502204e-02	ci left: 5.722548e-01	ci right 5.809363e-01	k: 28830	n:50000
LRP2   50000 perm   23 sec   (2195 perm/sec)   p_kst 5.766000e-01   p_cons 2.580000e-03   p_joint 2.098000e-02

Joint ci ratio: 1.131828e-01	ci left: 1.848956e-02	ci right 2.072391e-02	k: 1175	n:60000
Cons ci ratio: 3.134403e-01	ci left: 2.193063e-03	ci right 3.022883e-03	k: 155	n:60000
KS ci ratio: 1.371698e-02	ci left: 5.725010e-01	ci right 5.804249e-01	k: 34588	n:60000
LRP2   60000 perm   28 sec   (2169 perm/sec)   p_kst 5.764667e-01   p_cons 2.583333e-03   p_joint 1.958333e-02

Joint ci ratio: 1.245975e-01	ci left: 1.307345e-02	ci right 1.482433e-02	k: 975	n:70000
Cons ci ratio: 2.886041e-01	ci left: 2.249617e-03	ci right 3.021104e-03	k: 183	n:70000
KS ci ratio: 1.264521e-02	ci left: 5.748888e-01	ci right 5.822189e-01	k: 40499	n:70000
LRP2   70000 perm   33 sec   (2146 perm/sec)   p_kst 5.785571e-01   p_cons 2.614286e-03   p_joint 1.392857e-02

Joint ci ratio: 1.193159e-01	ci left: 1.251762e-02	ci right 1.411796e-02	k: 1064	n:80000
Cons ci ratio: 2.688681e-01	ci left: 2.293987e-03	ci right 3.017832e-03	k: 211	n:80000
KS ci ratio: 1.182234e-02	ci left: 5.753820e-01	ci right 5.822373e-01	k: 46305	n:80000
LRP2   80000 perm   38 sec   (2121 perm/sec)   p_kst 5.788125e-01   p_cons 2.637500e-03   p_joint 1.330000e-02

Joint ci ratio: 1.038725e-01	ci left: 1.476800e-02	ci right 1.639678e-02	k: 1401	n:90000
Cons ci ratio: 2.537583e-01	ci left: 2.309082e-03	ci right 2.990272e-03	k: 237	n:90000
KS ci ratio: 1.113306e-02	ci left: 5.761556e-01	ci right 5.826170e-01	k: 52145	n:90000
LRP2   90000 perm   43 sec   (2102 perm/sec)   p_kst 5.793889e-01   p_cons 2.633333e-03   p_joint 1.556667e-02

Joint ci ratio: 1.016976e-01	ci left: 1.389494e-02	ci right 1.539341e-02	k: 1463	n:100000
Cons ci ratio: 2.413983e-01	ci left: 2.312672e-03	ci right 2.956717e-03	k: 262	n:100000
KS ci ratio: 1.056759e-02	ci left: 5.760528e-01	ci right 5.821826e-01	k: 57912	n:100000
LRP2   100000 perm   48 sec   (2083 perm/sec)   p_kst 5.791200e-01   p_cons 2.620000e-03   p_joint 1.463000e-02

Joint ci ratio: 1.053231e-01	ci left: 1.178093e-02	ci right 1.309950e-02	k: 1367	n:110000
Cons ci ratio: 2.267707e-01	ci left: 2.401979e-03	ci right 3.024701e-03	k: 297	n:110000
KS ci ratio: 1.007359e-02	ci left: 5.763032e-01	ci right 5.821471e-01	k: 63715	n:110000
LRP2   110000 perm   53 sec   (2066 perm/sec)   p_kst 5.792273e-01   p_cons 2.700000e-03   p_joint 1.242727e-02

Joint ci ratio: 1.016480e-01	ci left: 1.161902e-02	ci right 1.287138e-02	k: 1468	n:120000
Cons ci ratio: 2.164800e-01	ci left: 2.430075e-03	ci right 3.027693e-03	k: 326	n:120000
KS ci ratio: 9.643630e-03	ci left: 5.764841e-01	ci right 5.820787e-01	k: 69514	n:120000
LRP2   120000 perm   59 sec   (2047 perm/sec)   p_kst 5.792833e-01   p_cons 2.716667e-03   p_joint 1.223333e-02

Joint ci ratio: 1.040877e-01	ci left: 1.023024e-02	ci right 1.136098e-02	k: 1402	n:130000
Cons ci ratio: 2.068922e-01	ci left: 2.468977e-03	ci right 3.045867e-03	k: 357	n:130000
KS ci ratio: 9.277131e-03	ci left: 5.759718e-01	ci right 5.813477e-01	k: 75226	n:130000
LRP2   130000 perm   64 sec   (2029 perm/sec)   p_kst 5.786615e-01   p_cons 2.746154e-03   p_joint 1.078462e-02

Joint ci ratio: 1.008741e-01	ci left: 1.013282e-02	ci right 1.121616e-02	k: 1493	n:140000
Cons ci ratio: 2.018862e-01	ci left: 2.414606e-03	ci right 2.963457e-03	k: 375	n:140000
KS ci ratio: 8.934779e-03	ci left: 5.763371e-01	ci right 5.815168e-01	k: 81050	n:140000
LRP2   140000 perm   70 sec   (2011 perm/sec)   p_kst 5.789286e-01   p_cons 2.678571e-03   p_joint 1.066429e-02

Joint ci ratio: 9.228101e-02	ci left: 1.133782e-02	ci right 1.244117e-02	k: 1782	n:150000
Cons ci ratio: 1.950060e-01	ci left: 2.424691e-03	ci right 2.954823e-03	k: 402	n:150000
KS ci ratio: 8.631383e-03	ci left: 5.764499e-01	ci right 5.814537e-01	k: 86843	n:150000
LRP2   150000 perm   75 sec   (1992 perm/sec)   p_kst 5.789533e-01   p_cons 2.680000e-03   p_joint 1.188000e-02

Joint ci ratio: 9.234191e-02	ci left: 1.062292e-02	ci right 1.165741e-02	k: 1781	n:160000
Cons ci ratio: 1.890049e-01	ci left: 2.427838e-03	ci right 2.940447e-03	k: 428	n:160000
KS ci ratio: 8.360147e-03	ci left: 5.763636e-01	ci right 5.812085e-01	k: 92606	n:160000
LRP2   160000 perm   81 sec   (1975 perm/sec)   p_kst 5.787875e-01   p_cons 2.675000e-03   p_joint 1.113125e-02

Joint ci ratio: 7.900007e-02	ci left: 1.371214e-02	ci right 1.484569e-02	k: 2426	n:170000
Cons ci ratio: 1.825230e-01	ci left: 2.458903e-03	ci right 2.958297e-03	k: 459	n:170000
KS ci ratio: 8.109058e-03	ci left: 5.765252e-01	ci right 5.812251e-01	k: 98409	n:170000
LRP2   170000 perm   87 sec   (1957 perm/sec)   p_kst 5.788765e-01   p_cons 2.700000e-03   p_joint 1.427059e-02

Joint ci ratio: 7.938071e-02	ci left: 1.283577e-02	ci right 1.390221e-02	k: 2405	n:180000
Cons ci ratio: 1.784972e-01	ci left: 2.433689e-03	ci right 2.915883e-03	k: 480	n:180000
KS ci ratio: 7.884611e-03	ci left: 5.763426e-01	ci right 5.809104e-01	k: 104153	n:180000
LRP2   180000 perm   93 sec   (1941 perm/sec)   p_kst 5.786278e-01   p_cons 2.666667e-03   p_joint 1.336111e-02

Joint ci ratio: 7.515684e-02	ci left: 1.358497e-02	ci right 1.465098e-02	k: 2681	n:190000
Cons ci ratio: 1.730071e-01	ci left: 2.461585e-03	ci right 2.932739e-03	k: 511	n:190000
KS ci ratio: 7.683872e-03	ci left: 5.757966e-01	ci right 5.802432e-01	k: 109824	n:190000
LRP2   190000 perm   99 sec   (1926 perm/sec)   p_kst 5.780211e-01   p_cons 2.689474e-03   p_joint 1.411053e-02

Joint ci ratio: 6.808318e-02	ci left: 1.574956e-02	ci right 1.686452e-02	k: 3260	n:200000
Cons ci ratio: 1.684616e-01	ci left: 2.472525e-03	ci right 2.932077e-03	k: 539	n:200000
KS ci ratio: 7.487335e-03	ci left: 5.759820e-01	ci right 5.803157e-01	k: 115630	n:200000
LRP2   200000 perm   105 sec   (1912 perm/sec)   p_kst 5.781500e-01   p_cons 2.695000e-03   p_joint 1.630000e-02

Joint ci ratio: 6.693141e-02	ci left: 1.553322e-02	ci right 1.661353e-02	k: 3374	n:210000
Cons ci ratio: 1.635364e-01	ci left: 2.505405e-03	ci right 2.956115e-03	k: 572	n:210000
KS ci ratio: 7.304931e-03	ci left: 5.761654e-01	ci right 5.803944e-01	k: 121439	n:210000
LRP2   210000 perm   111 sec   (1897 perm/sec)   p_kst 5.782810e-01   p_cons 2.723810e-03   p_joint 1.606667e-02

Joint ci ratio: 6.954415e-02	ci left: 1.374101e-02	ci right 1.473548e-02	k: 3131	n:220000
Cons ci ratio: 1.594155e-01	ci left: 2.522378e-03	ci right 2.963613e-03	k: 602	n:220000
KS ci ratio: 7.138964e-03	ci left: 5.760785e-01	ci right 5.802103e-01	k: 127192	n:220000
LRP2   220000 perm   117 sec   (1882 perm/sec)   p_kst 5.781455e-01   p_cons 2.736364e-03   p_joint 1.423182e-02

Joint ci ratio: 7.051939e-02	ci left: 1.278880e-02	ci right 1.372787e-02	k: 3048	n:230000
Cons ci ratio: 1.577293e-01	ci left: 2.466983e-03	ci right 2.893530e-03	k: 615	n:230000
KS ci ratio: 6.981950e-03	ci left: 5.761307e-01	ci right 5.801716e-01	k: 132975	n:230000
LRP2   230000 perm   123 sec   (1867 perm/sec)   p_kst 5.781522e-01   p_cons 2.673913e-03   p_joint 1.325217e-02

Joint ci ratio: 6.747787e-02	ci left: 1.339852e-02	ci right 1.433827e-02	k: 3327	n:240000
Cons ci ratio: 1.540223e-01	ci left: 2.484318e-03	ci right 2.902836e-03	k: 645	n:240000
KS ci ratio: 6.832409e-03	ci left: 5.763546e-01	ci right 5.803101e-01	k: 138800	n:240000
LRP2   240000 perm   129 sec   (1855 perm/sec)   p_kst 5.783333e-01   p_cons 2.687500e-03   p_joint 1.386250e-02

Joint ci ratio: 7.837183e-02	ci left: 9.519520e-03	ci right 1.029991e-02	k: 2476	n:250000
Cons ci ratio: 1.515801e-01	ci left: 2.465732e-03	ci right 2.873934e-03	k: 666	n:250000
KS ci ratio: 6.941320e-03	ci left: 5.586238e-01	ci right 5.625188e-01	k: 140143	n:250000
LRP2   250000 perm   136 sec   (1844 perm/sec)   p_kst 5.605720e-01   p_cons 2.664000e-03   p_joint 9.904000e-03

Joint ci ratio: 7.438230e-02	ci left: 1.017592e-02	ci right 1.096582e-02	k: 2747	n:260000
Cons ci ratio: 1.480683e-01	ci left: 2.489361e-03	ci right 2.891083e-03	k: 698	n:260000
KS ci ratio: 6.806829e-03	ci left: 5.586397e-01	ci right 5.624590e-01	k: 145743	n:260000
LRP2   260000 perm   142 sec   (1831 perm/sec)   p_kst 5.605500e-01   p_cons 2.684615e-03   p_joint 1.056538e-02

Joint ci ratio: 7.351030e-02	ci left: 1.003893e-02	ci right 1.080867e-02	k: 2813	n:270000
Cons ci ratio: 1.455908e-01	ci left: 2.482786e-03	ci right 2.876159e-03	k: 722	n:270000
KS ci ratio: 6.682225e-03	ci left: 5.584809e-01	ci right 5.622289e-01	k: 151296	n:270000
LRP2   270000 perm   148 sec   (1819 perm/sec)   p_kst 5.603556e-01   p_cons 2.674074e-03   p_joint 1.041852e-02

Joint ci ratio: 7.427432e-02	ci left: 9.483994e-03	ci right 1.021906e-02	k: 2757	n:280000
Cons ci ratio: 1.426603e-01	ci left: 2.497395e-03	ci right 2.884441e-03	k: 752	n:280000
KS ci ratio: 6.566267e-03	ci left: 5.581804e-01	ci right 5.618612e-01	k: 156806	n:280000
LRP2   280000 perm   155 sec   (1805 perm/sec)   p_kst 5.600214e-01   p_cons 2.685714e-03   p_joint 9.846429e-03

Joint ci ratio: 7.419206e-02	ci left: 9.180596e-03	ci right 9.891326e-03	k: 2764	n:290000
Cons ci ratio: 1.396319e-01	ci left: 2.521055e-03	ci right 2.902784e-03	k: 785	n:290000
KS ci ratio: 6.451396e-03	ci left: 5.582635e-01	ci right 5.618801e-01	k: 162421	n:290000
LRP2   290000 perm   162 sec   (1794 perm/sec)   p_kst 5.600724e-01   p_cons 2.706897e-03   p_joint 9.531034e-03

Joint ci ratio: 7.020081e-02	ci left: 9.925401e-03	ci right 1.065077e-02	k: 3085	n:300000
Cons ci ratio: 1.378046e-01	ci left: 2.504589e-03	ci right 2.878454e-03	k: 806	n:300000
KS ci ratio: 6.342221e-03	ci left: 5.583516e-01	ci right 5.619073e-01	k: 168039	n:300000
LRP2   300000 perm   168 sec   (1781 perm/sec)   p_kst 5.601300e-01   p_cons 2.686667e-03   p_joint 1.028333e-02

Joint ci ratio: 7.088853e-02	ci left: 9.421344e-03	ci right 1.011690e-02	k: 3027	n:310000
Cons ci ratio: 1.365441e-01	ci left: 2.470519e-03	ci right 2.835651e-03	k: 821	n:310000
KS ci ratio: 6.233794e-03	ci left: 5.587991e-01	ci right 5.622966e-01	k: 173770	n:310000
LRP2   310000 perm   175 sec   (1768 perm/sec)   p_kst 5.605484e-01   p_cons 2.648387e-03   p_joint 9.764516e-03

Joint ci ratio: 7.153419e-02	ci left: 8.964176e-03	ci right 9.632256e-03	k: 2974	n:320000
Cons ci ratio: 1.336469e-01	ci left: 2.502016e-03	ci right 2.863334e-03	k: 857	n:320000
KS ci ratio: 6.135326e-03	ci left: 5.588501e-01	ci right 5.622925e-01	k: 179383	n:320000
LRP2   320000 perm   182 sec   (1756 perm/sec)   p_kst 5.605719e-01   p_cons 2.678125e-03   p_joint 9.293750e-03

Joint ci ratio: 7.031452e-02	ci left: 9.002102e-03	ci right 9.661103e-03	k: 3078	n:330000
Cons ci ratio: 1.314435e-01	ci left: 2.511163e-03	ci right 2.867356e-03	k: 886	n:330000
KS ci ratio: 6.041307e-03	ci left: 5.589046e-01	ci right 5.622943e-01	k: 184998	n:330000
LRP2   330000 perm   189 sec   (1743 perm/sec)   p_kst 5.606000e-01   p_cons 2.684848e-03   p_joint 9.327273e-03

Joint ci ratio: 6.805230e-02	ci left: 9.335681e-03	ci right 9.996246e-03	k: 3285	n:340000
Cons ci ratio: 1.299158e-01	ci left: 2.497050e-03	ci right 2.846806e-03	k: 907	n:340000
KS ci ratio: 5.950914e-03	ci left: 5.590033e-01	ci right 5.623427e-01	k: 190629	n:340000
LRP2   340000 perm   196 sec   (1731 perm/sec)   p_kst 5.606735e-01   p_cons 2.667647e-03   p_joint 9.661765e-03

Joint ci ratio: 6.186833e-02	ci left: 1.098902e-02	ci right 1.169339e-02	k: 3968	n:350000
Cons ci ratio: 1.276843e-01	ci left: 2.514190e-03	ci right 2.859840e-03	k: 939	n:350000
KS ci ratio: 5.865957e-03	ci left: 5.589710e-01	ci right 5.622623e-01	k: 196216	n:350000
LRP2   350000 perm   204 sec   (1719 perm/sec)   p_kst 5.606171e-01   p_cons 2.682857e-03   p_joint 1.133714e-02

Joint ci ratio: 6.172114e-02	ci left: 1.073842e-02	ci right 1.142503e-02	k: 3988	n:360000
Cons ci ratio: 1.259544e-01	ci left: 2.514282e-03	ci right 2.854913e-03	k: 965	n:360000
KS ci ratio: 5.783559e-03	ci left: 5.590241e-01	ci right 5.622694e-01	k: 201833	n:360000
LRP2   360000 perm   211 sec   (1707 perm/sec)   p_kst 5.606472e-01   p_cons 2.680556e-03   p_joint 1.107778e-02

Joint ci ratio: 6.391224e-02	ci left: 9.743066e-03	ci right 1.038897e-02	k: 3723	n:370000
Cons ci ratio: 1.239801e-01	ci left: 2.527494e-03	ci right 2.864153e-03	k: 996	n:370000
KS ci ratio: 5.706416e-03	ci left: 5.589125e-01	ci right 5.621136e-01	k: 207390	n:370000
LRP2   370000 perm   218 sec   (1694 perm/sec)   p_kst 5.605135e-01   p_cons 2.691892e-03   p_joint 1.006216e-02

Joint ci ratio: 6.466135e-02	ci left: 9.269098e-03	ci right 9.891047e-03	k: 3639	n:380000
Cons ci ratio: 1.224546e-01	ci left: 2.524743e-03	ci right 2.856597e-03	k: 1021	n:380000
KS ci ratio: 5.629001e-03	ci left: 5.590939e-01	ci right 5.622525e-01	k: 213056	n:380000
LRP2   380000 perm   226 sec   (1683 perm/sec)   p_kst 5.606737e-01   p_cons 2.686842e-03   p_joint 9.576316e-03

Joint ci ratio: 6.205495e-02	ci left: 9.813795e-03	ci right 1.044480e-02	k: 3949	n:390000
Cons ci ratio: 1.206380e-01	ci left: 2.537077e-03	ci right 2.865253e-03	k: 1052	n:390000
KS ci ratio: 5.555636e-03	ci left: 5.591791e-01	ci right 5.622969e-01	k: 218688	n:390000
LRP2   390000 perm   233 sec   (1671 perm/sec)   p_kst 5.607385e-01   p_cons 2.697436e-03   p_joint 1.012564e-02

Joint ci ratio: 6.117742e-02	ci left: 9.849064e-03	ci right 1.047306e-02	k: 4063	n:400000
Cons ci ratio: 1.192868e-01	ci left: 2.531849e-03	ci right 2.855422e-03	k: 1076	n:400000
KS ci ratio: 5.486597e-03	ci left: 5.591228e-01	ci right 5.622013e-01	k: 224265	n:400000
LRP2   400000 perm   241 sec   (1660 perm/sec)   p_kst 5.606625e-01   p_cons 2.690000e-03   p_joint 1.015750e-02

Joint ci ratio: 5.563557e-02	ci left: 1.163045e-02	ci right 1.229842e-02	k: 4904	n:410000
Cons ci ratio: 1.176056e-01	ci left: 2.543467e-03	ci right 2.863625e-03	k: 1107	n:410000
KS ci ratio: 5.416341e-03	ci left: 5.594086e-01	ci right 5.624491e-01	k: 229981	n:410000
LRP2   410000 perm   249 sec   (1647 perm/sec)   p_kst 5.609293e-01   p_cons 2.700000e-03   p_joint 1.196098e-02

Joint ci ratio: 5.462715e-02	ci left: 1.178092e-02	ci right 1.244488e-02	k: 5086	n:420000
Cons ci ratio: 1.160958e-01	ci left: 2.549939e-03	ci right 2.866508e-03	k: 1136	n:420000
KS ci ratio: 5.350756e-03	ci left: 5.594928e-01	ci right 5.624969e-01	k: 235618	n:420000
LRP2   420000 perm   257 sec   (1636 perm/sec)   p_kst 5.609952e-01   p_cons 2.704762e-03   p_joint 1.210952e-02

Joint ci ratio: 5.419462e-02	ci left: 1.169503e-02	ci right 1.234877e-02	k: 5168	n:430000
Cons ci ratio: 1.149397e-01	ci left: 2.542580e-03	ci right 2.854879e-03	k: 1159	n:430000
KS ci ratio: 5.287372e-03	ci left: 5.595849e-01	ci right 5.625538e-01	k: 241260	n:430000
LRP2   430000 perm   265 sec   (1625 perm/sec)   p_kst 5.610698e-01   p_cons 2.695349e-03   p_joint 1.201860e-02

Joint ci ratio: 5.349447e-02	ci left: 1.173417e-02	ci right 1.238137e-02	k: 5304	n:440000
Cons ci ratio: 1.141565e-01	ci left: 2.520114e-03	ci right 2.827402e-03	k: 1175	n:440000
KS ci ratio: 5.227346e-03	ci left: 5.595640e-01	ci right 5.624989e-01	k: 246854	n:440000
LRP2   440000 perm   272 sec   (1615 perm/sec)   p_kst 5.610318e-01   p_cons 2.670455e-03   p_joint 1.205455e-02

Joint ci ratio: 5.305319e-02	ci left: 1.166855e-02	ci right 1.230665e-02	k: 5393	n:450000
Cons ci ratio: 1.132939e-01	ci left: 2.502972e-03	ci right 2.805710e-03	k: 1193	n:450000
KS ci ratio: 5.169926e-03	ci left: 5.594863e-01	ci right 5.623885e-01	k: 252422	n:450000
LRP2   450000 perm   281 sec   (1604 perm/sec)   p_kst 5.609378e-01   p_cons 2.651111e-03   p_joint 1.198444e-02

Joint ci ratio: 5.214823e-02	ci left: 1.181823e-02	ci right 1.245316e-02	k: 5581	n:460000
Cons ci ratio: 1.118965e-01	ci left: 2.511941e-03	ci right 2.811769e-03	k: 1223	n:460000
KS ci ratio: 5.113115e-03	ci left: 5.595318e-01	ci right 5.624022e-01	k: 258045	n:460000
LRP2   460000 perm   288 sec   (1595 perm/sec)   p_kst 5.609674e-01   p_cons 2.658696e-03   p_joint 1.213261e-02

Joint ci ratio: 5.189691e-02	ci left: 1.168225e-02	ci right 1.230676e-02	k: 5636	n:470000
Cons ci ratio: 1.105937e-01	ci left: 2.518481e-03	ci right 2.815362e-03	k: 1252	n:470000
KS ci ratio: 5.058159e-03	ci left: 5.595734e-01	ci right 5.624131e-01	k: 263667	n:470000
LRP2   470000 perm   297 sec   (1584 perm/sec)   p_kst 5.609936e-01   p_cons 2.663830e-03   p_joint 1.199149e-02

Joint ci ratio: 5.178276e-02	ci left: 1.149231e-02	ci right 1.210527e-02	k: 5662	n:480000
Cons ci ratio: 1.095498e-01	ci left: 2.514636e-03	ci right 2.808085e-03	k: 1276	n:480000
KS ci ratio: 5.004831e-03	ci left: 5.596239e-01	ci right 5.624337e-01	k: 269294	n:480000
LRP2   480000 perm   305 sec   (1574 perm/sec)   p_kst 5.610292e-01   p_cons 2.658333e-03   p_joint 1.179583e-02

Joint ci ratio: 5.160958e-02	ci left: 1.133631e-02	ci right 1.193887e-02	k: 5701	n:490000
Cons ci ratio: 1.086187e-01	ci left: 2.506990e-03	ci right 2.796900e-03	k: 1298	n:490000
KS ci ratio: 4.955270e-03	ci left: 5.594621e-01	ci right 5.622433e-01	k: 274818	n:490000
LRP2   490000 perm   313 sec   (1563 perm/sec)   p_kst 5.608531e-01   p_cons 2.648980e-03   p_joint 1.163469e-02

Joint ci ratio: 5.141084e-02	ci left: 1.119841e-02	ci right 1.179128e-02	k: 5746	n:500000
Cons ci ratio: 1.075071e-01	ci left: 2.509390e-03	ci right 2.796421e-03	k: 1325	n:500000
KS ci ratio: 4.905717e-03	ci left: 5.594510e-01	ci right 5.622043e-01	k: 280414	n:500000
LRP2   500000 perm   322 sec   (1554 perm/sec)   p_kst 5.608280e-01   p_cons 2.650000e-03   p_joint 1.149200e-02

Joint ci ratio: 5.087772e-02	ci left: 1.121305e-02	ci right 1.180036e-02	k: 5867	n:510000
Cons ci ratio: 1.065871e-01	ci left: 2.504077e-03	ci right 2.787895e-03	k: 1348	n:510000
KS ci ratio: 4.856480e-03	ci left: 5.595563e-01	ci right 5.622823e-01	k: 286069	n:510000
LRP2   510000 perm   330 sec   (1545 perm/sec)   p_kst 5.609196e-01   p_cons 2.643137e-03   p_joint 1.150392e-02

Joint ci ratio: 5.073931e-02	ci left: 1.106005e-02	ci right 1.163772e-02	k: 5900	n:520000
Cons ci ratio: 1.054209e-01	ci left: 2.512085e-03	ci right 2.793502e-03	k: 1378	n:520000
KS ci ratio: 4.810481e-03	ci left: 5.594748e-01	ci right 5.621745e-01	k: 291629	n:520000
LRP2   520000 perm   339 sec   (1535 perm/sec)   p_kst 5.608250e-01   p_cons 2.650000e-03   p_joint 1.134615e-02

Joint ci ratio: 5.030271e-02	ci left: 1.104325e-02	ci right 1.161494e-02	k: 6003	n:530000
Cons ci ratio: 1.047029e-01	ci left: 2.499593e-03	ci right 2.777586e-03	k: 1397	n:530000
KS ci ratio: 4.763938e-03	ci left: 5.595853e-01	ci right 5.622593e-01	k: 297289	n:530000
LRP2   530000 perm   347 sec   (1526 perm/sec)   p_kst 5.609226e-01   p_cons 2.635849e-03   p_joint 1.132642e-02

Joint ci ratio: 4.984418e-02	ci left: 1.104173e-02	ci right 1.160798e-02	k: 6114	n:540000
Cons ci ratio: 1.033793e-01	ci left: 2.518238e-03	ci right 2.794549e-03	k: 1433	n:540000
KS ci ratio: 4.720478e-03	ci left: 5.595084e-01	ci right 5.621576e-01	k: 302850	n:540000
LRP2   540000 perm   356 sec   (1516 perm/sec)   p_kst 5.608333e-01   p_cons 2.653704e-03   p_joint 1.132222e-02

Joint ci ratio: 4.939395e-02	ci left: 1.104208e-02	ci right 1.160309e-02	k: 6226	n:550000
Cons ci ratio: 1.023845e-01	ci left: 2.522051e-03	ci right 2.795957e-03	k: 1461	n:550000
KS ci ratio: 4.676769e-03	ci left: 5.595836e-01	ci right 5.622085e-01	k: 308493	n:550000
LRP2   550000 perm   365 sec   (1507 perm/sec)   p_kst 5.608964e-01   p_cons 2.656364e-03   p_joint 1.132000e-02

Joint ci ratio: 4.869222e-02	ci left: 1.116240e-02	ci right 1.172124e-02	k: 6406	n:560000
Cons ci ratio: 1.009097e-01	ci left: 2.551850e-03	ci right 2.824764e-03	k: 1504	n:560000
KS ci ratio: 4.634589e-03	ci left: 5.596204e-01	ci right 5.622218e-01	k: 314116	n:560000
LRP2   560000 perm   374 sec   (1498 perm/sec)   p_kst 5.609214e-01   p_cons 2.685714e-03   p_joint 1.143929e-02

Joint ci ratio: 4.854033e-02	ci left: 1.103761e-02	ci right 1.158843e-02	k: 6447	n:570000
Cons ci ratio: 1.001806e-01	ci left: 2.544706e-03	ci right 2.814774e-03	k: 1526	n:570000
KS ci ratio: 4.594674e-03	ci left: 5.595332e-01	ci right 5.621118e-01	k: 319669	n:570000
LRP2   570000 perm   383 sec   (1489 perm/sec)   p_kst 5.608228e-01   p_cons 2.677193e-03   p_joint 1.131053e-02

Joint ci ratio: 4.878284e-02	ci left: 1.074167e-02	ci right 1.128047e-02	k: 6385	n:580000
Cons ci ratio: 9.927446e-02	ci left: 2.547904e-03	ci right 2.815723e-03	k: 1554	n:580000
KS ci ratio: 4.554068e-03	ci left: 5.596337e-01	ci right 5.621898e-01	k: 325329	n:580000
LRP2   580000 perm   392 sec   (1481 perm/sec)   p_kst 5.609121e-01   p_cons 2.679310e-03   p_joint 1.100862e-02

Outputting figure to mutsig2_images.part000000000098/LRP2.45_14284_580000_0.56091_0.0026793_0.011009.png
                gene_name: LRP2
               theta_stop: 0.099 
                    nperm: 580000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.0027 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 3 percent done.
LPHN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
Cons ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
LPHN3   10000 perm   3 sec   (3721 perm/sec)   p_kst 3.150000e-02   p_cons 2.024000e-01   p_joint 4.630000e-02

Joint ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
Cons ci ratio: 5.301910e-02	ci left: 2.089270e-01	ci right 2.203560e-01	k: 4292	n:20000
KS ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
LPHN3   20000 perm   6 sec   (3445 perm/sec)   p_kst 3.210000e-02   p_cons 2.146000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.068111e-01	ci left: 4.066722e-02	ci right 4.528848e-02	k: 1288	n:30000
Cons ci ratio: 4.299479e-02	ci left: 2.122803e-01	ci right 2.216412e-01	k: 6508	n:30000
KS ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
LPHN3   30000 perm   9 sec   (3340 perm/sec)   p_kst 3.043333e-02   p_cons 2.169333e-01   p_joint 4.293333e-02

Joint ci ratio: 8.880349e-02	ci left: 4.438357e-02	ci right 4.853259e-02	k: 1857	n:40000
Cons ci ratio: 3.717630e-02	ci left: 2.134404e-01	ci right 2.215506e-01	k: 8699	n:40000
KS ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
LPHN3   40000 perm   12 sec   (3270 perm/sec)   p_kst 3.052500e-02   p_cons 2.174750e-01   p_joint 4.642500e-02

Joint ci ratio: 7.817465e-02	ci left: 4.600518e-02	ci right 4.976753e-02	k: 2393	n:50000
Cons ci ratio: 3.321446e-02	ci left: 2.142482e-01	ci right 2.215045e-01	k: 10893	n:50000
KS ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
LPHN3   50000 perm   16 sec   (3215 perm/sec)   p_kst 3.066000e-02   p_cons 2.178600e-01   p_joint 4.786000e-02

Outputting figure to mutsig2_images.part000000000098/LPHN3.32_4502_50000_0.03066_0.21786_0.04786.png
                gene_name: LPHN3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 5 percent done.
LPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
LPA   10000 perm   3 sec   (3697 perm/sec)   p_kst 1.000000e-04   p_cons 2.771000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
LPA   20000 perm   6 sec   (3291 perm/sec)   p_kst 5.000000e-05   p_cons 2.616000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.804304e-02	ci left: 2.564013e-01	ci right 2.663782e-01	k: 7841	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
LPA   30000 perm   9 sec   (3215 perm/sec)   p_kst 3.333333e-05   p_cons 2.613667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 3.150405e-02	ci left: 2.746333e-01	ci right 2.834488e-01	k: 11161	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
LPA   40000 perm   13 sec   (3163 perm/sec)   p_kst 2.500000e-05   p_cons 2.790250e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.826589e-02	ci left: 2.738570e-01	ci right 2.817288e-01	k: 13889	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
LPA   50000 perm   16 sec   (3074 perm/sec)   p_kst 2.000000e-05   p_cons 2.777800e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.582243e-02	ci left: 2.739031e-01	ci right 2.810851e-01	k: 16649	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
LPA   60000 perm   20 sec   (2995 perm/sec)   p_kst 1.666667e-05   p_cons 2.774833e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.398039e-02	ci left: 2.729469e-01	ci right 2.795860e-01	k: 19338	n:70000
KS ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
LPA   70000 perm   24 sec   (2943 perm/sec)   p_kst 2.857143e-05   p_cons 2.762571e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.244333e-02	ci left: 2.729541e-01	ci right 2.791621e-01	k: 22084	n:80000
KS ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
LPA   80000 perm   27 sec   (2914 perm/sec)   p_kst 3.750000e-05   p_cons 2.760500e-01   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.116603e-02	ci left: 2.730148e-01	ci right 2.788663e-01	k: 24834	n:90000
KS ci ratio: 1.753019e+00	ci left: 1.210974e-05	ci right 1.137915e-04	k: 4	n:90000
LPA   90000 perm   31 sec   (2887 perm/sec)   p_kst 4.444444e-05   p_cons 2.759333e-01   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.007205e-02	ci left: 2.733207e-01	ci right 2.788723e-01	k: 27609	n:100000
KS ci ratio: 1.600277e+00	ci left: 1.623506e-05	ci right 1.166794e-04	k: 5	n:100000
LPA   100000 perm   35 sec   (2857 perm/sec)   p_kst 5.000000e-05   p_cons 2.760900e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.913882e-02	ci left: 2.734322e-01	ci right 2.787250e-01	k: 30368	n:110000
KS ci ratio: 1.600282e+00	ci left: 1.475913e-05	ci right 1.060725e-04	k: 5	n:110000
LPA   110000 perm   39 sec   (2828 perm/sec)   p_kst 4.545455e-05   p_cons 2.760727e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.834231e-02	ci left: 2.731480e-01	ci right 2.782128e-01	k: 33081	n:120000
KS ci ratio: 1.600287e+00	ci left: 1.352919e-05	ci right 9.723340e-05	k: 5	n:120000
LPA   120000 perm   43 sec   (2795 perm/sec)   p_kst 4.166667e-05   p_cons 2.756750e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.760300e-02	ci left: 2.736939e-01	ci right 2.785622e-01	k: 35896	n:130000
KS ci ratio: 1.481575e+00	ci left: 1.693783e-05	ci right 1.004548e-04	k: 6	n:130000
LPA   130000 perm   47 sec   (2767 perm/sec)   p_kst 4.615385e-05   p_cons 2.761231e-01   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.721637e-02	ci left: 2.679036e-01	ci right 2.725631e-01	k: 37832	n:140000
KS ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
LPA   140000 perm   52 sec   (2714 perm/sec)   p_kst 4.285714e-05   p_cons 2.702286e-01   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.660911e-02	ci left: 2.685390e-01	ci right 2.730432e-01	k: 40618	n:150000
KS ci ratio: 1.481581e+00	ci left: 1.467943e-05	ci right 8.706111e-05	k: 6	n:150000
LPA   150000 perm   56 sec   (2680 perm/sec)   p_kst 4.000000e-05   p_cons 2.707867e-01   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.609621e-02	ci left: 2.682558e-01	ci right 2.726150e-01	k: 43269	n:160000
KS ci ratio: 1.306626e+00	ci left: 2.158669e-05	ci right 9.851754e-05	k: 8	n:160000
LPA   160000 perm   60 sec   (2656 perm/sec)   p_kst 5.000000e-05   p_cons 2.704313e-01   p_joint 0

Joint ci ratio: 3.958645e-01	ci left: 4.627322e-04	ci right 6.960256e-04	k: 97	n:170000
Cons ci ratio: 1.560965e-02	ci left: 2.684715e-01	ci right 2.727010e-01	k: 45999	n:170000
KS ci ratio: 1.131563e+00	ci left: 3.230137e-05	ci right 1.157737e-04	k: 11	n:170000
LPA   170000 perm   65 sec   (2630 perm/sec)   p_kst 6.470588e-05   p_cons 2.705824e-01   p_joint 5.705882e-04

Joint ci ratio: 3.918900e-01	ci left: 4.470346e-04	ci right 6.695652e-04	k: 99	n:180000
Cons ci ratio: 1.518928e-02	ci left: 2.680276e-01	ci right 2.721354e-01	k: 48614	n:180000
KS ci ratio: 1.087170e+00	ci left: 3.444810e-05	ci right 1.164504e-04	k: 12	n:180000
LPA   180000 perm   69 sec   (2606 perm/sec)   p_kst 6.666667e-05   p_cons 2.700778e-01   p_joint 5.500000e-04

Joint ci ratio: 3.938711e-01	ci left: 4.187620e-04	ci right 6.285467e-04	k: 98	n:190000
Cons ci ratio: 1.478413e-02	ci left: 2.680834e-01	ci right 2.720815e-01	k: 51315	n:190000
KS ci ratio: 1.047623e+00	ci left: 3.643182e-05	ci right 1.169992e-04	k: 13	n:190000
LPA   190000 perm   74 sec   (2581 perm/sec)   p_kst 6.842105e-05   p_cons 2.700789e-01   p_joint 5.157895e-04

Joint ci ratio: 3.861486e-01	ci left: 4.158626e-04	ci right 6.190714e-04	k: 102	n:200000
Cons ci ratio: 1.441799e-02	ci left: 2.679105e-01	ci right 2.718062e-01	k: 53971	n:200000
KS ci ratio: 1.047625e+00	ci left: 3.461020e-05	ci right 1.111494e-04	k: 13	n:200000
LPA   200000 perm   78 sec   (2557 perm/sec)   p_kst 6.500000e-05   p_cons 2.698550e-01   p_joint 5.100000e-04

Joint ci ratio: 3.753696e-01	ci left: 4.218970e-04	ci right 6.208846e-04	k: 108	n:210000
Cons ci ratio: 1.407606e-02	ci left: 2.678027e-01	ci right 2.716037e-01	k: 56637	n:210000
KS ci ratio: 1.012101e+00	ci left: 3.644775e-05	ci right 1.118528e-04	k: 14	n:210000
LPA   210000 perm   83 sec   (2533 perm/sec)   p_kst 6.666667e-05   p_cons 2.697000e-01   p_joint 5.142857e-04

Joint ci ratio: 3.719752e-01	ci left: 4.109566e-04	ci right 6.026043e-04	k: 110	n:220000
Cons ci ratio: 1.373864e-02	ci left: 2.682409e-01	ci right 2.719561e-01	k: 59421	n:220000
KS ci ratio: 1.012103e+00	ci left: 3.479101e-05	ci right 1.067687e-04	k: 14	n:220000
LPA   220000 perm   88 sec   (2510 perm/sec)   p_kst 6.363636e-05   p_cons 2.700955e-01   p_joint 5.000000e-04

Joint ci ratio: 3.638703e-01	ci left: 4.128184e-04	ci right 6.001442e-04	k: 115	n:230000
Cons ci ratio: 1.342570e-02	ci left: 2.686029e-01	ci right 2.722377e-01	k: 62196	n:230000
KS ci ratio: 1.012104e+00	ci left: 3.327834e-05	ci right 1.021267e-04	k: 14	n:230000
LPA   230000 perm   93 sec   (2486 perm/sec)   p_kst 6.086957e-05   p_cons 2.704174e-01   p_joint 5.000000e-04

Joint ci ratio: 3.607758e-01	ci left: 4.031919e-04	ci right 5.842277e-04	k: 117	n:240000
Cons ci ratio: 1.315028e-02	ci left: 2.684241e-01	ci right 2.719814e-01	k: 64848	n:240000
KS ci ratio: 1.012106e+00	ci left: 3.189173e-05	ci right 9.787149e-05	k: 14	n:240000
LPA   240000 perm   97 sec   (2464 perm/sec)   p_kst 5.833333e-05   p_cons 2.702000e-01   p_joint 4.875000e-04

Joint ci ratio: 3.638777e-01	ci left: 3.797917e-04	ci right 5.521349e-04	k: 115	n:250000
Cons ci ratio: 1.289008e-02	ci left: 2.682923e-01	ci right 2.717770e-01	k: 67508	n:250000
KS ci ratio: 9.507054e-01	ci left: 3.658196e-05	ci right 1.039299e-04	k: 16	n:250000
LPA   250000 perm   102 sec   (2442 perm/sec)   p_kst 6.400000e-05   p_cons 2.700320e-01   p_joint 4.600000e-04

Joint ci ratio: 3.548162e-01	ci left: 3.861784e-04	ci right 5.560500e-04	k: 121	n:260000
Cons ci ratio: 1.263500e-02	ci left: 2.684746e-01	ci right 2.718921e-01	k: 70247	n:260000
KS ci ratio: 9.239191e-01	ci left: 3.808939e-05	ci right 1.046850e-04	k: 17	n:260000
LPA   260000 perm   108 sec   (2415 perm/sec)   p_kst 6.538462e-05   p_cons 2.701808e-01   p_joint 4.653846e-04

Joint ci ratio: 3.577652e-01	ci left: 3.651303e-04	ci right 5.273891e-04	k: 119	n:270000
Cons ci ratio: 1.240695e-02	ci left: 2.682484e-01	ci right 2.716010e-01	k: 72879	n:270000
KS ci ratio: 9.239204e-01	ci left: 3.667866e-05	ci right 1.008079e-04	k: 17	n:270000
LPA   270000 perm   113 sec   (2394 perm/sec)   p_kst 6.296296e-05   p_cons 2.699222e-01   p_joint 4.407407e-04

Joint ci ratio: 3.577681e-01	ci left: 3.520895e-04	ci right 5.085546e-04	k: 119	n:280000
Cons ci ratio: 1.218783e-02	ci left: 2.681352e-01	ci right 2.714267e-01	k: 75538	n:280000
KS ci ratio: 9.239215e-01	ci left: 3.536869e-05	ci right 9.720768e-05	k: 17	n:280000
LPA   280000 perm   118 sec   (2374 perm/sec)   p_kst 6.071429e-05   p_cons 2.697786e-01   p_joint 4.250000e-04

Joint ci ratio: 3.519505e-01	ci left: 3.525121e-04	ci right 5.060359e-04	k: 123	n:290000
Cons ci ratio: 1.197961e-02	ci left: 2.680406e-01	ci right 2.712744e-01	k: 78200	n:290000
KS ci ratio: 9.239226e-01	ci left: 3.414907e-05	ci right 9.385575e-05	k: 17	n:290000
LPA   290000 perm   123 sec   (2350 perm/sec)   p_kst 5.862069e-05   p_cons 2.696552e-01   p_joint 4.241379e-04

Joint ci ratio: 3.703354e-01	ci left: 3.043872e-04	ci right 4.455586e-04	k: 111	n:300000
Cons ci ratio: 1.177742e-02	ci left: 2.680958e-01	ci right 2.712753e-01	k: 80905	n:300000
KS ci ratio: 9.239236e-01	ci left: 3.301076e-05	ci right 9.072728e-05	k: 17	n:300000
LPA   300000 perm   129 sec   (2330 perm/sec)   p_kst 5.666667e-05   p_cons 2.696833e-01   p_joint 3.700000e-04

Joint ci ratio: 3.638942e-01	ci left: 3.062813e-04	ci right 4.452740e-04	k: 115	n:310000
Cons ci ratio: 1.158371e-02	ci left: 2.681962e-01	ci right 2.713242e-01	k: 83625	n:310000
KS ci ratio: 9.239245e-01	ci left: 3.194588e-05	ci right 8.780064e-05	k: 17	n:310000
LPA   310000 perm   134 sec   (2310 perm/sec)   p_kst 5.483871e-05   p_cons 2.697581e-01   p_joint 3.709677e-04

Joint ci ratio: 3.592784e-01	ci left: 3.052333e-04	ci right 4.415824e-04	k: 118	n:320000
Cons ci ratio: 1.139717e-02	ci left: 2.683625e-01	ci right 2.714417e-01	k: 86368	n:320000
KS ci ratio: 8.992816e-01	ci left: 3.333764e-05	ci right 8.889780e-05	k: 18	n:320000
LPA   320000 perm   140 sec   (2291 perm/sec)   p_kst 5.625000e-05   p_cons 2.699000e-01   p_joint 3.687500e-04

Joint ci ratio: 3.562978e-01	ci left: 3.014996e-04	ci right 4.348045e-04	k: 120	n:330000
Cons ci ratio: 1.121446e-02	ci left: 2.686915e-01	ci right 2.717247e-01	k: 89168	n:330000
KS ci ratio: 8.992824e-01	ci left: 3.232740e-05	ci right 8.620397e-05	k: 18	n:330000
LPA   330000 perm   145 sec   (2271 perm/sec)   p_kst 5.454545e-05   p_cons 2.702061e-01   p_joint 3.636364e-04

Joint ci ratio: 3.577817e-01	ci left: 2.899543e-04	ci right 4.188128e-04	k: 119	n:340000
Cons ci ratio: 1.105046e-02	ci left: 2.686374e-01	ci right 2.716253e-01	k: 91844	n:340000
KS ci ratio: 8.765116e-01	ci left: 3.364515e-05	ci right 8.726585e-05	k: 19	n:340000
LPA   340000 perm   151 sec   (2253 perm/sec)   p_kst 5.588235e-05   p_cons 2.701294e-01   p_joint 3.500000e-04

Joint ci ratio: 3.519635e-01	ci left: 2.920798e-04	ci right 4.192898e-04	k: 123	n:350000
Cons ci ratio: 1.089163e-02	ci left: 2.686523e-01	ci right 2.715972e-01	k: 94543	n:350000
KS ci ratio: 8.765124e-01	ci left: 3.268385e-05	ci right 8.477258e-05	k: 19	n:350000
LPA   350000 perm   157 sec   (2235 perm/sec)   p_kst 5.428571e-05   p_cons 2.701229e-01   p_joint 3.514286e-04

Joint ci ratio: 3.450744e-01	ci left: 2.966398e-04	ci right 4.227425e-04	k: 128	n:360000
Cons ci ratio: 1.073871e-02	ci left: 2.686944e-01	ci right 2.715982e-01	k: 97252	n:360000
KS ci ratio: 8.765131e-01	ci left: 3.177596e-05	ci right 8.241782e-05	k: 19	n:360000
LPA   360000 perm   162 sec   (2216 perm/sec)   p_kst 5.277778e-05   p_cons 2.701444e-01   p_joint 3.555556e-04

Joint ci ratio: 3.450761e-01	ci left: 2.886223e-04	ci right 4.113174e-04	k: 128	n:370000
Cons ci ratio: 1.059343e-02	ci left: 2.686833e-01	ci right 2.715474e-01	k: 99942	n:370000
KS ci ratio: 8.765138e-01	ci left: 3.091714e-05	ci right 8.019034e-05	k: 19	n:370000
LPA   370000 perm   168 sec   (2198 perm/sec)   p_kst 5.135135e-05   p_cons 2.701135e-01   p_joint 3.459459e-04

Joint ci ratio: 3.450777e-01	ci left: 2.810268e-04	ci right 4.004936e-04	k: 128	n:380000
Cons ci ratio: 1.045243e-02	ci left: 2.687281e-01	ci right 2.715543e-01	k: 102653	n:380000
KS ci ratio: 8.765144e-01	ci left: 3.010353e-05	ci right 7.808010e-05	k: 19	n:380000
LPA   380000 perm   174 sec   (2180 perm/sec)   p_kst 5.000000e-05   p_cons 2.701395e-01   p_joint 3.368421e-04

Joint ci ratio: 3.424340e-01	ci left: 2.785064e-04	ci right 3.957939e-04	k: 130	n:390000
Cons ci ratio: 1.031423e-02	ci left: 2.688733e-01	ci right 2.716634e-01	k: 105404	n:390000
KS ci ratio: 8.765150e-01	ci left: 2.933163e-05	ci right 7.607807e-05	k: 19	n:390000
LPA   390000 perm   181 sec   (2159 perm/sec)   p_kst 4.871795e-05   p_cons 2.702667e-01   p_joint 3.333333e-04

Joint ci ratio: 3.464264e-01	ci left: 2.646921e-04	ci right 3.777534e-04	k: 127	n:400000
Cons ci ratio: 1.017866e-02	ci left: 2.691163e-01	ci right 2.718720e-01	k: 108197	n:400000
KS ci ratio: 8.553906e-01	ci left: 3.054156e-05	ci right 7.721989e-05	k: 20	n:400000
LPA   400000 perm   187 sec   (2139 perm/sec)   p_kst 5.000000e-05   p_cons 2.704925e-01   p_joint 3.175000e-04

Joint ci ratio: 3.519727e-01	ci left: 2.493353e-04	ci right 3.579321e-04	k: 123	n:410000
Cons ci ratio: 1.005388e-02	ci left: 2.691285e-01	ci right 2.718504e-01	k: 110900	n:410000
KS ci ratio: 8.357234e-01	ci left: 3.170596e-05	ci right 7.829341e-05	k: 21	n:410000
LPA   410000 perm   193 sec   (2120 perm/sec)   p_kst 5.121951e-05   p_cons 2.704878e-01   p_joint 3.000000e-04

Joint ci ratio: 3.639122e-01	ci left: 2.260630e-04	ci right 3.286579e-04	k: 115	n:420000
Cons ci ratio: 9.933525e-03	ci left: 2.691427e-01	ci right 2.718319e-01	k: 113604	n:420000
KS ci ratio: 7.543792e-01	ci left: 4.043863e-05	ci right 9.070351e-05	k: 26	n:420000
LPA   420000 perm   200 sec   (2102 perm/sec)   p_kst 6.190476e-05   p_cons 2.704857e-01   p_joint 2.738095e-04

Joint ci ratio: 3.623544e-01	ci left: 2.229190e-04	ci right 3.235516e-04	k: 116	n:430000
Cons ci ratio: 9.817622e-03	ci left: 2.691471e-01	ci right 2.718048e-01	k: 116304	n:430000
KS ci ratio: 7.543798e-01	ci left: 3.949819e-05	ci right 8.859416e-05	k: 26	n:430000
LPA   430000 perm   208 sec   (2063 perm/sec)   p_kst 6.046512e-05   p_cons 2.704744e-01   p_joint 2.697674e-04

Joint ci ratio: 3.623555e-01	ci left: 2.178526e-04	ci right 3.161984e-04	k: 116	n:440000
Cons ci ratio: 9.703057e-03	ci left: 2.692582e-01	ci right 2.718858e-01	k: 119051	n:440000
KS ci ratio: 7.407860e-01	ci left: 4.043940e-05	ci right 8.927962e-05	k: 27	n:440000
LPA   440000 perm   215 sec   (2048 perm/sec)   p_kst 6.136364e-05   p_cons 2.705705e-01   p_joint 2.636364e-04

Joint ci ratio: 3.519775e-01	ci left: 2.271717e-04	ci right 3.261168e-04	k: 123	n:450000
Cons ci ratio: 9.593383e-03	ci left: 2.693245e-01	ci right 2.719229e-01	k: 121780	n:450000
KS ci ratio: 7.407865e-01	ci left: 3.954074e-05	ci right 8.729566e-05	k: 27	n:450000
LPA   450000 perm   221 sec   (2032 perm/sec)   p_kst 6.000000e-05   p_cons 2.706222e-01   p_joint 2.733333e-04

Joint ci ratio: 3.477954e-01	ci left: 2.281819e-04	ci right 3.261199e-04	k: 126	n:460000
Cons ci ratio: 9.199547e-03	ci left: 2.817029e-01	ci right 2.843085e-01	k: 130182	n:460000
KS ci ratio: 7.279020e-01	ci left: 4.044775e-05	ci right 8.797228e-05	k: 28	n:460000
LPA   460000 perm   228 sec   (2016 perm/sec)   p_kst 6.086957e-05   p_cons 2.830043e-01   p_joint 2.739130e-04

Joint ci ratio: 3.424439e-01	ci left: 2.311000e-04	ci right 3.284265e-04	k: 130	n:470000
Cons ci ratio: 9.099200e-03	ci left: 2.818038e-01	ci right 2.843818e-01	k: 133053	n:470000
KS ci ratio: 7.279025e-01	ci left: 3.958715e-05	ci right 8.610055e-05	k: 28	n:470000
LPA   470000 perm   235 sec   (2000 perm/sec)   p_kst 5.957447e-05   p_cons 2.830915e-01   p_joint 2.765957e-04

Joint ci ratio: 3.437598e-01	ci left: 2.243815e-04	ci right 3.193223e-04	k: 129	n:480000
Cons ci ratio: 9.007197e-03	ci left: 2.816698e-01	ci right 2.842203e-01	k: 135813	n:480000
KS ci ratio: 7.279030e-01	ci left: 3.876242e-05	ci right 8.430681e-05	k: 28	n:480000
LPA   480000 perm   242 sec   (1984 perm/sec)   p_kst 5.833333e-05   p_cons 2.829437e-01   p_joint 2.687500e-04

Joint ci ratio: 3.398606e-01	ci left: 2.253992e-04	ci right 3.194515e-04	k: 132	n:490000
Cons ci ratio: 8.913982e-03	ci left: 2.817207e-01	ci right 2.842452e-01	k: 138661	n:490000
KS ci ratio: 7.279034e-01	ci left: 3.797134e-05	ci right 8.258629e-05	k: 28	n:490000
LPA   490000 perm   249 sec   (1969 perm/sec)   p_kst 5.714286e-05   p_cons 2.829816e-01   p_joint 2.693878e-04

Joint ci ratio: 3.324435e-01	ci left: 2.318787e-04	ci right 3.260713e-04	k: 138	n:500000
Cons ci ratio: 8.825995e-03	ci left: 2.816598e-01	ci right 2.841587e-01	k: 141454	n:500000
KS ci ratio: 7.040303e-01	ci left: 4.048210e-05	ci right 8.565263e-05	k: 30	n:500000
LPA   500000 perm   256 sec   (1955 perm/sec)   p_kst 6.000000e-05   p_cons 2.829080e-01   p_joint 2.760000e-04

Joint ci ratio: 3.289130e-01	ci left: 2.327261e-04	ci right 3.260467e-04	k: 141	n:510000
Cons ci ratio: 8.738281e-03	ci left: 2.817072e-01	ci right 2.841816e-01	k: 144301	n:510000
KS ci ratio: 6.823617e-01	ci left: 4.291798e-05	ci right 8.857621e-05	k: 32	n:510000
LPA   510000 perm   263 sec   (1940 perm/sec)   p_kst 6.274510e-05   p_cons 2.829431e-01   p_joint 2.764706e-04

Joint ci ratio: 3.243756e-01	ci left: 2.353123e-04	ci right 3.280973e-04	k: 145	n:520000
Cons ci ratio: 8.653911e-03	ci left: 2.817164e-01	ci right 2.841668e-01	k: 147129	n:520000
KS ci ratio: 6.625780e-01	ci left: 4.528116e-05	ci right 9.136726e-05	k: 34	n:520000
LPA   520000 perm   270 sec   (1923 perm/sec)   p_kst 6.538462e-05   p_cons 2.829404e-01   p_joint 2.788462e-04

Joint ci ratio: 3.200211e-01	ci left: 2.378094e-04	ci right 3.300622e-04	k: 149	n:530000
Cons ci ratio: 8.573413e-03	ci left: 2.816556e-01	ci right 2.840826e-01	k: 149920	n:530000
KS ci ratio: 6.625784e-01	ci left: 4.442679e-05	ci right 8.964337e-05	k: 34	n:530000
LPA   530000 perm   278 sec   (1909 perm/sec)   p_kst 6.415094e-05   p_cons 2.828679e-01   p_joint 2.811321e-04

Joint ci ratio: 3.221776e-01	ci left: 2.300001e-04	ci right 3.199490e-04	k: 147	n:540000
Cons ci ratio: 8.493841e-03	ci left: 2.816582e-01	ci right 2.840626e-01	k: 152744	n:540000
KS ci ratio: 6.625788e-01	ci left: 4.360406e-05	ci right 8.798333e-05	k: 34	n:540000
LPA   540000 perm   285 sec   (1896 perm/sec)   p_kst 6.296296e-05   p_cons 2.828593e-01   p_joint 2.722222e-04

Joint ci ratio: 3.200227e-01	ci left: 2.291616e-04	ci right 3.180602e-04	k: 149	n:550000
Cons ci ratio: 8.414219e-03	ci left: 2.817680e-01	ci right 2.841507e-01	k: 155627	n:550000
KS ci ratio: 6.358854e-01	ci left: 4.736664e-05	ci right 9.272541e-05	k: 37	n:550000
LPA   550000 perm   292 sec   (1884 perm/sec)   p_kst 6.727273e-05   p_cons 2.829582e-01   p_joint 2.709091e-04

Joint ci ratio: 3.289171e-01	ci left: 2.119466e-04	ci right 2.969360e-04	k: 141	n:560000
Cons ci ratio: 8.337932e-03	ci left: 2.818187e-01	ci right 2.841800e-01	k: 158479	n:560000
KS ci ratio: 6.276799e-01	ci left: 4.802019e-05	ci right 9.313805e-05	k: 38	n:560000
LPA   560000 perm   299 sec   (1871 perm/sec)   p_kst 6.785714e-05   p_cons 2.829982e-01   p_joint 2.517857e-04

Joint ci ratio: 3.243797e-01	ci left: 2.146705e-04	ci right 2.993175e-04	k: 145	n:570000
Cons ci ratio: 8.265326e-03	ci left: 2.817870e-01	ci right 2.841275e-01	k: 161285	n:570000
KS ci ratio: 6.121786e-01	ci left: 5.013482e-05	ci right 9.555782e-05	k: 40	n:570000
LPA   570000 perm   307 sec   (1858 perm/sec)   p_kst 7.017544e-05   p_cons 2.829561e-01   p_joint 2.543860e-04

Joint ci ratio: 3.277662e-01	ci left: 2.062200e-04	ci right 2.885628e-04	k: 142	n:580000
Cons ci ratio: 8.193296e-03	ci left: 2.818203e-01	ci right 2.841405e-01	k: 164128	n:580000
KS ci ratio: 6.121790e-01	ci left: 4.927042e-05	ci right 9.391029e-05	k: 40	n:580000
LPA   580000 perm   314 sec   (1846 perm/sec)   p_kst 6.896552e-05   p_cons 2.829793e-01   p_joint 2.448276e-04

Joint ci ratio: 3.254980e-01	ci left: 2.058367e-04	ci right 2.873387e-04	k: 144	n:590000
Cons ci ratio: 8.124203e-03	ci left: 2.817983e-01	ci right 2.840987e-01	k: 166939	n:590000
KS ci ratio: 6.121794e-01	ci left: 4.843532e-05	ci right 9.231861e-05	k: 40	n:590000
LPA   590000 perm   322 sec   (1834 perm/sec)   p_kst 6.779661e-05   p_cons 2.829475e-01   p_joint 2.440678e-04

Joint ci ratio: 3.200264e-01	ci left: 2.100644e-04	ci right 2.915558e-04	k: 149	n:600000
Cons ci ratio: 8.055704e-03	ci left: 2.818338e-01	ci right 2.841150e-01	k: 169784	n:600000
KS ci ratio: 5.977725e-01	ci left: 5.045029e-05	ci right 9.461850e-05	k: 42	n:600000
LPA   600000 perm   329 sec   (1822 perm/sec)   p_kst 7.000000e-05   p_cons 2.829733e-01   p_joint 2.483333e-04

Joint ci ratio: 3.243824e-01	ci left: 2.005935e-04	ci right 2.796905e-04	k: 145	n:610000
Cons ci ratio: 8.498611e-03	ci left: 2.574868e-01	ci right 2.596860e-01	k: 157737	n:610000
KS ci ratio: 5.977728e-01	ci left: 4.962323e-05	ci right 9.306740e-05	k: 42	n:610000
LPA   610000 perm   337 sec   (1809 perm/sec)   p_kst 6.885246e-05   p_cons 2.585852e-01   p_joint 2.377049e-04

Joint ci ratio: 3.491856e-01	ci left: 1.678235e-04	ci right 2.402080e-04	k: 125	n:620000
Cons ci ratio: 8.429258e-03	ci left: 2.575201e-01	ci right 2.597015e-01	k: 160338	n:620000
KS ci ratio: 5.977732e-01	ci left: 4.882285e-05	ci right 9.156633e-05	k: 42	n:620000
LPA   620000 perm   345 sec   (1797 perm/sec)   p_kst 6.774194e-05   p_cons 2.586097e-01   p_joint 2.016129e-04

Joint ci ratio: 3.424561e-01	ci left: 1.724070e-04	ci right 2.450182e-04	k: 130	n:630000
Cons ci ratio: 8.361923e-03	ci left: 2.575365e-01	ci right 2.597006e-01	k: 162929	n:630000
KS ci ratio: 5.909411e-01	ci left: 4.939616e-05	ci right 9.193656e-05	k: 43	n:630000
LPA   630000 perm   353 sec   (1785 perm/sec)   p_kst 6.825397e-05   p_cons 2.586175e-01   p_joint 2.063492e-04

Joint ci ratio: 3.411568e-01	ci left: 1.711415e-04	ci right 2.428859e-04	k: 131	n:640000
Cons ci ratio: 8.294925e-03	ci left: 2.576103e-01	ci right 2.597575e-01	k: 165557	n:640000
KS ci ratio: 5.909415e-01	ci left: 4.862434e-05	ci right 9.050007e-05	k: 43	n:640000
LPA   640000 perm   361 sec   (1772 perm/sec)   p_kst 6.718750e-05   p_cons 2.586828e-01   p_joint 2.046875e-04

Joint ci ratio: 3.437721e-01	ci left: 1.656962e-04	ci right 2.358088e-04	k: 129	n:650000
Cons ci ratio: 8.230436e-03	ci left: 2.576388e-01	ci right 2.597695e-01	k: 168157	n:650000
KS ci ratio: 5.779516e-01	ci left: 5.049783e-05	ci right 9.263513e-05	k: 45	n:650000
LPA   650000 perm   369 sec   (1760 perm/sec)   p_kst 6.923077e-05   p_cons 2.587031e-01   p_joint 1.984615e-04

Joint ci ratio: 3.398726e-01	ci left: 1.673410e-04	ci right 2.371701e-04	k: 132	n:660000
Cons ci ratio: 8.166719e-03	ci left: 2.576998e-01	ci right 2.598145e-01	k: 170779	n:660000
KS ci ratio: 5.657823e-01	ci left: 5.232444e-05	ci right 9.469591e-05	k: 47	n:660000
LPA   660000 perm   377 sec   (1749 perm/sec)   p_kst 7.121212e-05   p_cons 2.587561e-01   p_joint 2.000000e-04

Joint ci ratio: 3.411583e-01	ci left: 1.634783e-04	ci right 2.320106e-04	k: 131	n:670000
Cons ci ratio: 8.103008e-03	ci left: 2.578276e-01	ci right 2.599267e-01	k: 173447	n:670000
KS ci ratio: 5.657826e-01	ci left: 5.154347e-05	ci right 9.328256e-05	k: 47	n:670000
LPA   670000 perm   385 sec   (1738 perm/sec)   p_kst 7.014925e-05   p_cons 2.588761e-01   p_joint 1.955224e-04

Joint ci ratio: 3.411588e-01	ci left: 1.610742e-04	ci right 2.285988e-04	k: 131	n:680000
Cons ci ratio: 8.043138e-03	ci left: 2.578386e-01	ci right 2.599223e-01	k: 176038	n:680000
KS ci ratio: 5.657829e-01	ci left: 5.078548e-05	ci right 9.191077e-05	k: 47	n:680000
LPA   680000 perm   394 sec   (1727 perm/sec)   p_kst 6.911765e-05   p_cons 2.588794e-01   p_joint 1.926471e-04

Joint ci ratio: 3.386033e-01	ci left: 1.613910e-04	ci right 2.284308e-04	k: 133	n:690000
Cons ci ratio: 7.985933e-03	ci left: 2.577842e-01	ci right 2.598526e-01	k: 178584	n:690000
KS ci ratio: 5.599797e-01	ci left: 5.129233e-05	ci right 9.223234e-05	k: 48	n:690000
LPA   690000 perm   402 sec   (1717 perm/sec)   p_kst 6.956522e-05   p_cons 2.588174e-01   p_joint 1.927536e-04

Joint ci ratio: 3.373471e-01	ci left: 1.603927e-04	ci right 2.267168e-04	k: 134	n:700000
Cons ci ratio: 7.926891e-03	ci left: 2.578784e-01	ci right 2.599321e-01	k: 181233	n:700000
KS ci ratio: 5.543515e-01	ci left: 5.178682e-05	ci right 9.254267e-05	k: 49	n:700000
LPA   700000 perm   410 sec   (1706 perm/sec)   p_kst 7.000000e-05   p_cons 2.589043e-01   p_joint 1.914286e-04

Joint ci ratio: 3.437750e-01	ci left: 1.516935e-04	ci right 2.158817e-04	k: 129	n:710000
Cons ci ratio: 7.874195e-03	ci left: 2.577239e-01	ci right 2.597626e-01	k: 183707	n:710000
KS ci ratio: 5.543518e-01	ci left: 5.105742e-05	ci right 9.123927e-05	k: 49	n:710000
LPA   710000 perm   419 sec   (1695 perm/sec)   p_kst 6.901408e-05   p_cons 2.587423e-01   p_joint 1.816901e-04

Joint ci ratio: 3.411607e-01	ci left: 1.521255e-04	ci right 2.158991e-04	k: 131	n:720000
Cons ci ratio: 7.820495e-03	ci left: 2.576735e-01	ci right 2.596979e-01	k: 186253	n:720000
KS ci ratio: 5.488900e-01	ci left: 5.154343e-05	ci right 9.155283e-05	k: 50	n:720000
LPA   720000 perm   427 sec   (1685 perm/sec)   p_kst 6.944444e-05   p_cons 2.586847e-01   p_joint 1.819444e-04

Joint ci ratio: 3.505852e-01	ci left: 1.412852e-04	ci right 2.025231e-04	k: 124	n:730000
Cons ci ratio: 7.767629e-03	ci left: 2.576369e-01	ci right 2.596472e-01	k: 188808	n:730000
KS ci ratio: 5.334243e-01	ci left: 5.438489e-05	ci right 9.496511e-05	k: 53	n:730000
LPA   730000 perm   436 sec   (1674 perm/sec)   p_kst 7.260274e-05   p_cons 2.586411e-01   p_joint 1.698630e-04

Joint ci ratio: 3.478137e-01	ci left: 1.418416e-04	ci right 2.027252e-04	k: 126	n:740000
Cons ci ratio: 7.714299e-03	ci left: 2.576769e-01	ci right 2.596737e-01	k: 191419	n:740000
KS ci ratio: 5.334246e-01	ci left: 5.364996e-05	ci right 9.368181e-05	k: 53	n:740000
LPA   740000 perm   445 sec   (1664 perm/sec)   p_kst 7.162162e-05   p_cons 2.586743e-01   p_joint 1.702703e-04

Joint ci ratio: 3.464525e-01	ci left: 1.411675e-04	ci right 2.014713e-04	k: 127	n:750000
Cons ci ratio: 7.661519e-03	ci left: 2.577425e-01	ci right 2.597261e-01	k: 194050	n:750000
KS ci ratio: 5.285530e-01	ci left: 5.408906e-05	ci right 9.394335e-05	k: 54	n:750000
LPA   750000 perm   454 sec   (1654 perm/sec)   p_kst 7.200000e-05   p_cons 2.587333e-01   p_joint 1.693333e-04

Joint ci ratio: 3.451072e-01	ci left: 1.405115e-04	ci right 2.002500e-04	k: 128	n:760000
Cons ci ratio: 7.610565e-03	ci left: 2.577683e-01	ci right 2.597388e-01	k: 196652	n:760000
KS ci ratio: 5.238124e-01	ci left: 5.451825e-05	ci right 9.419642e-05	k: 55	n:760000
LPA   760000 perm   463 sec   (1642 perm/sec)   p_kst 7.236842e-05   p_cons 2.587526e-01   p_joint 1.684211e-04

Joint ci ratio: 3.464533e-01	ci left: 1.375007e-04	ci right 1.962384e-04	k: 127	n:770000
Cons ci ratio: 7.560256e-03	ci left: 2.578116e-01	ci right 2.597694e-01	k: 199268	n:770000
KS ci ratio: 5.238126e-01	ci left: 5.381021e-05	ci right 9.297310e-05	k: 55	n:770000
LPA   770000 perm   472 sec   (1630 perm/sec)   p_kst 7.142857e-05   p_cons 2.587896e-01   p_joint 1.649351e-04

Joint ci ratio: 3.451080e-01	ci left: 1.369086e-04	ci right 1.951155e-04	k: 128	n:780000
Cons ci ratio: 7.512688e-03	ci left: 2.577643e-01	ci right 2.597093e-01	k: 201814	n:780000
KS ci ratio: 5.238129e-01	ci left: 5.312033e-05	ci right 9.178115e-05	k: 55	n:780000
LPA   780000 perm   482 sec   (1620 perm/sec)   p_kst 7.051282e-05   p_cons 2.587359e-01   p_joint 1.641026e-04

Joint ci ratio: 3.437782e-01	ci left: 1.363319e-04	ci right 1.940206e-04	k: 129	n:790000
Cons ci ratio: 7.464529e-03	ci left: 2.577940e-01	ci right 2.597268e-01	k: 204420	n:790000
KS ci ratio: 5.191976e-01	ci left: 5.354701e-05	ci right 9.205049e-05	k: 56	n:790000
LPA   790000 perm   491 sec   (1609 perm/sec)   p_kst 7.088608e-05   p_cons 2.587595e-01   p_joint 1.632911e-04

Joint ci ratio: 3.411638e-01	ci left: 1.369128e-04	ci right 1.943095e-04	k: 131	n:800000
Cons ci ratio: 7.417357e-03	ci left: 2.578193e-01	ci right 2.597400e-01	k: 207023	n:800000
KS ci ratio: 5.191979e-01	ci left: 5.287767e-05	ci right 9.089987e-05	k: 56	n:800000
LPA   800000 perm   500 sec   (1599 perm/sec)   p_kst 7.000000e-05   p_cons 2.587788e-01   p_joint 1.637500e-04

Joint ci ratio: 3.386082e-01	ci left: 1.374809e-04	ci right 1.945897e-04	k: 133	n:810000
Cons ci ratio: 7.373726e-03	ci left: 2.577059e-01	ci right 2.596144e-01	k: 209514	n:810000
KS ci ratio: 5.191981e-01	ci left: 5.222485e-05	ci right 8.977766e-05	k: 56	n:810000
LPA   810000 perm   510 sec   (1589 perm/sec)   p_kst 6.913580e-05   p_cons 2.586593e-01   p_joint 1.641975e-04

Joint ci ratio: 3.411645e-01	ci left: 1.335734e-04	ci right 1.895703e-04	k: 131	n:820000
Cons ci ratio: 7.327639e-03	ci left: 2.577634e-01	ci right 2.596603e-01	k: 212143	n:820000
KS ci ratio: 5.103219e-01	ci left: 5.370998e-05	ci right 9.143619e-05	k: 58	n:820000
LPA   820000 perm   519 sec   (1579 perm/sec)   p_kst 7.073171e-05   p_cons 2.587110e-01   p_joint 1.597561e-04

Joint ci ratio: 3.386089e-01	ci left: 1.341681e-04	ci right 1.899008e-04	k: 133	n:830000
Cons ci ratio: 7.283434e-03	ci left: 2.577653e-01	ci right 2.596508e-01	k: 214727	n:830000
KS ci ratio: 5.060512e-01	ci left: 5.411312e-05	ci right 9.169267e-05	k: 59	n:830000
LPA   830000 perm   529 sec   (1569 perm/sec)   p_kst 7.108434e-05   p_cons 2.587072e-01   p_joint 1.602410e-04

Joint ci ratio: 3.398800e-01	ci left: 1.314817e-04	ci right 1.863487e-04	k: 132	n:840000
Cons ci ratio: 7.238896e-03	ci left: 2.578268e-01	ci right 2.597011e-01	k: 217361	n:840000
KS ci ratio: 5.060514e-01	ci left: 5.346891e-05	ci right 9.060110e-05	k: 59	n:840000
LPA   840000 perm   539 sec   (1559 perm/sec)   p_kst 7.023810e-05   p_cons 2.587631e-01   p_joint 1.571429e-04

Joint ci ratio: 3.386095e-01	ci left: 1.310111e-04	ci right 1.854326e-04	k: 133	n:850000
Cons ci ratio: 7.195850e-03	ci left: 2.578504e-01	ci right 2.597136e-01	k: 219964	n:850000
KS ci ratio: 5.060517e-01	ci left: 5.283986e-05	ci right 8.953522e-05	k: 59	n:850000
LPA   850000 perm   549 sec   (1549 perm/sec)   p_kst 6.941176e-05   p_cons 2.587812e-01   p_joint 1.564706e-04

Joint ci ratio: 3.398806e-01	ci left: 1.284240e-04	ci right 1.820150e-04	k: 132	n:860000
Cons ci ratio: 7.153562e-03	ci left: 2.578734e-01	ci right 2.597259e-01	k: 222567	n:860000
KS ci ratio: 5.060519e-01	ci left: 5.222544e-05	ci right 8.849412e-05	k: 59	n:860000
LPA   860000 perm   559 sec   (1539 perm/sec)   p_kst 6.860465e-05   p_cons 2.587988e-01   p_joint 1.534884e-04

Joint ci ratio: 3.386101e-01	ci left: 1.279994e-04	ci right 1.811699e-04	k: 133	n:870000
Cons ci ratio: 7.111393e-03	ci left: 2.579293e-01	ci right 2.597712e-01	k: 225199	n:870000
KS ci ratio: 5.018867e-01	ci left: 5.262835e-05	ci right 8.877141e-05	k: 60	n:870000
LPA   870000 perm   569 sec   (1530 perm/sec)   p_kst 6.896552e-05   p_cons 2.588494e-01   p_joint 1.528736e-04

Joint ci ratio: 3.386104e-01	ci left: 1.265448e-04	ci right 1.791112e-04	k: 133	n:880000
Cons ci ratio: 7.069919e-03	ci left: 2.579862e-01	ci right 2.598177e-01	k: 227833	n:880000
KS ci ratio: 5.018869e-01	ci left: 5.203030e-05	ci right 8.776266e-05	k: 60	n:880000
LPA   880000 perm   579 sec   (1520 perm/sec)   p_kst 6.818182e-05   p_cons 2.589011e-01   p_joint 1.511364e-04

Joint ci ratio: 3.373541e-01	ci left: 1.261512e-04	ci right 1.783173e-04	k: 134	n:890000
Cons ci ratio: 7.031510e-03	ci left: 2.579139e-01	ci right 2.597349e-01	k: 230353	n:890000
KS ci ratio: 5.018871e-01	ci left: 5.144569e-05	ci right 8.677657e-05	k: 60	n:890000
LPA   890000 perm   589 sec   (1512 perm/sec)   p_kst 6.741573e-05   p_cons 2.588236e-01   p_joint 1.505618e-04

Joint ci ratio: 3.324642e-01	ci left: 1.288203e-04	ci right 1.811527e-04	k: 138	n:900000
Cons ci ratio: 6.992180e-03	ci left: 2.579276e-01	ci right 2.597384e-01	k: 232949	n:900000
KS ci ratio: 5.018873e-01	ci left: 5.087406e-05	ci right 8.581239e-05	k: 60	n:900000
LPA   900000 perm   599 sec   (1503 perm/sec)   p_kst 6.666667e-05   p_cons 2.588322e-01   p_joint 1.533333e-04

Joint ci ratio: 3.373547e-01	ci left: 1.233786e-04	ci right 1.743983e-04	k: 134	n:910000
Cons ci ratio: 6.954339e-03	ci left: 2.578949e-01	ci right 2.596957e-01	k: 235503	n:910000
KS ci ratio: 4.978233e-01	ci left: 5.127528e-05	ci right 8.610583e-05	k: 61	n:910000
LPA   910000 perm   609 sec   (1494 perm/sec)   p_kst 6.703297e-05   p_cons 2.587945e-01   p_joint 1.472527e-04

Joint ci ratio: 3.398824e-01	ci left: 1.200484e-04	ci right 1.701446e-04	k: 132	n:920000
Cons ci ratio: 6.915695e-03	ci left: 2.579411e-01	ci right 2.597322e-01	k: 238129	n:920000
KS ci ratio: 4.978235e-01	ci left: 5.071794e-05	ci right 8.516991e-05	k: 61	n:920000
LPA   920000 perm   620 sec   (1484 perm/sec)   p_kst 6.630435e-05   p_cons 2.588359e-01   p_joint 1.434783e-04

Joint ci ratio: 3.386118e-01	ci left: 1.197412e-04	ci right 1.694817e-04	k: 133	n:930000
Cons ci ratio: 6.876358e-03	ci left: 2.580604e-01	ci right 2.598421e-01	k: 240824	n:930000
KS ci ratio: 4.938566e-01	ci left: 5.111332e-05	ci right 8.546285e-05	k: 62	n:930000
LPA   930000 perm   631 sec   (1473 perm/sec)   p_kst 6.666667e-05   p_cons 2.589505e-01   p_joint 1.430108e-04

Joint ci ratio: 3.754459e-01	ci left: 9.425038e-05	ci right 1.387140e-04	k: 108	n:940000
Cons ci ratio: 6.949079e-03	ci left: 2.520290e-01	ci right 2.537875e-01	k: 237733	n:940000
KS ci ratio: 4.899831e-01	ci left: 5.150136e-05	ci right 8.574852e-05	k: 63	n:940000
LPA   940000 perm   642 sec   (1463 perm/sec)   p_kst 6.702128e-05   p_cons 2.529074e-01   p_joint 1.148936e-04

Joint ci ratio: 3.737355e-01	ci left: 9.421180e-05	ci right 1.384051e-04	k: 109	n:950000
Cons ci ratio: 6.912198e-03	ci left: 2.520451e-01	ci right 2.537943e-01	k: 240273	n:950000
KS ci ratio: 4.899832e-01	ci left: 5.095924e-05	ci right 8.484592e-05	k: 63	n:950000
LPA   950000 perm   655 sec   (1451 perm/sec)   p_kst 6.631579e-05   p_cons 2.529189e-01   p_joint 1.147368e-04

Joint ci ratio: 3.703834e-01	ci left: 9.511898e-05	ci right 1.392407e-04	k: 111	n:960000
Cons ci ratio: 6.875367e-03	ci left: 2.520900e-01	ci right 2.538302e-01	k: 242841	n:960000
KS ci ratio: 4.899834e-01	ci left: 5.042841e-05	ci right 8.396211e-05	k: 63	n:960000
LPA   960000 perm   665 sec   (1443 perm/sec)   p_kst 6.562500e-05   p_cons 2.529594e-01   p_joint 1.156250e-04

Joint ci ratio: 3.771810e-01	ci left: 9.040197e-05	ci right 1.332959e-04	k: 107	n:970000
Cons ci ratio: 6.839324e-03	ci left: 2.521227e-01	ci right 2.538540e-01	k: 245398	n:970000
KS ci ratio: 4.861996e-01	ci left: 5.081252e-05	ci right 8.425343e-05	k: 64	n:970000
LPA   970000 perm   676 sec   (1435 perm/sec)   p_kst 6.597938e-05   p_cons 2.529876e-01   p_joint 1.103093e-04

Joint ci ratio: 3.771812e-01	ci left: 8.947949e-05	ci right 1.319358e-04	k: 107	n:980000
Cons ci ratio: 6.804338e-03	ci left: 2.521273e-01	ci right 2.538497e-01	k: 247928	n:980000
KS ci ratio: 4.825022e-01	ci left: 5.118978e-05	ci right 8.453784e-05	k: 65	n:980000
LPA   980000 perm   687 sec   (1427 perm/sec)   p_kst 6.632653e-05   p_cons 2.529878e-01   p_joint 1.091837e-04

Joint ci ratio: 3.754470e-01	ci left: 8.949022e-05	ci right 1.317083e-04	k: 108	n:990000
Cons ci ratio: 6.768997e-03	ci left: 2.521812e-01	ci right 2.538950e-01	k: 250507	n:990000
KS ci ratio: 4.788878e-01	ci left: 5.156036e-05	ci right 8.481558e-05	k: 66	n:990000
LPA   990000 perm   698 sec   (1418 perm/sec)   p_kst 6.666667e-05   p_cons 2.530374e-01   p_joint 1.090909e-04

Joint ci ratio: 3.754473e-01	ci left: 8.859531e-05	ci right 1.303913e-04	k: 108	n:1000000
Cons ci ratio: 6.735609e-03	ci left: 2.521552e-01	ci right 2.538603e-01	k: 253007	n:1000000
KS ci ratio: 4.788879e-01	ci left: 5.104475e-05	ci right 8.396743e-05	k: 66	n:1000000
LPA   1000000 perm   709 sec   (1410 perm/sec)   p_kst 6.600000e-05   p_cons 2.530070e-01   p_joint 1.080000e-04

Joint ci ratio: 3.754475e-01	ci left: 8.771812e-05	ci right 1.291003e-04	k: 108	n:1010000
Cons ci ratio: 6.701884e-03	ci left: 2.521761e-01	ci right 2.538728e-01	k: 255554	n:1010000
KS ci ratio: 4.753536e-01	ci left: 5.141034e-05	ci right 8.424443e-05	k: 67	n:1010000
LPA   1010000 perm   720 sec   (1403 perm/sec)   p_kst 6.633663e-05   p_cons 2.530238e-01   p_joint 1.069307e-04

Joint ci ratio: 3.754477e-01	ci left: 8.685813e-05	ci right 1.278346e-04	k: 108	n:1020000
Cons ci ratio: 6.668488e-03	ci left: 2.522065e-01	ci right 2.538949e-01	k: 258111	n:1020000
KS ci ratio: 4.753537e-01	ci left: 5.090631e-05	ci right 8.341851e-05	k: 67	n:1020000
LPA   1020000 perm   731 sec   (1396 perm/sec)   p_kst 6.568627e-05   p_cons 2.530500e-01   p_joint 1.058824e-04

Joint ci ratio: 3.737372e-01	ci left: 8.689432e-05	ci right 1.276553e-04	k: 109	n:1030000
Cons ci ratio: 6.634615e-03	ci left: 2.522916e-01	ci right 2.539719e-01	k: 260725	n:1030000
KS ci ratio: 4.718965e-01	ci left: 5.126701e-05	ci right 8.369460e-05	k: 68	n:1030000
LPA   1030000 perm   743 sec   (1386 perm/sec)   p_kst 6.601942e-05   p_cons 2.531311e-01   p_joint 1.058252e-04

Joint ci ratio: 3.737374e-01	ci left: 8.605879e-05	ci right 1.264279e-04	k: 109	n:1040000
Cons ci ratio: 6.603688e-03	ci left: 2.522358e-01	ci right 2.539079e-01	k: 263194	n:1040000
KS ci ratio: 4.718967e-01	ci left: 5.077406e-05	ci right 8.288985e-05	k: 68	n:1040000
LPA   1040000 perm   754 sec   (1379 perm/sec)   p_kst 6.538462e-05   p_cons 2.530712e-01   p_joint 1.048077e-04

Joint ci ratio: 3.720501e-01	ci left: 8.610231e-05	ci right 1.262651e-04	k: 110	n:1050000
Cons ci ratio: 6.572062e-03	ci left: 2.522457e-01	ci right 2.539099e-01	k: 265731	n:1050000
KS ci ratio: 4.685138e-01	ci left: 5.112999e-05	ci right 8.316491e-05	k: 69	n:1050000
LPA   1050000 perm   767 sec   (1369 perm/sec)   p_kst 6.571429e-05   p_cons 2.530771e-01   p_joint 1.047619e-04

Joint ci ratio: 3.703854e-01	ci left: 8.614541e-05	ci right 1.261049e-04	k: 111	n:1060000
Cons ci ratio: 6.540087e-03	ci left: 2.523017e-01	ci right 2.539581e-01	k: 268317	n:1060000
KS ci ratio: 4.685139e-01	ci left: 5.064762e-05	ci right 8.238034e-05	k: 69	n:1060000
LPA   1060000 perm   780 sec   (1359 perm/sec)   p_kst 6.509434e-05   p_cons 2.531292e-01   p_joint 1.047170e-04

Joint ci ratio: 3.671219e-01	ci left: 8.703628e-05	ci right 1.269680e-04	k: 113	n:1070000
Cons ci ratio: 6.508542e-03	ci left: 2.523585e-01	ci right 2.540073e-01	k: 270905	n:1070000
KS ci ratio: 4.685141e-01	ci left: 5.017428e-05	ci right 8.161044e-05	k: 69	n:1070000
LPA   1070000 perm   792 sec   (1351 perm/sec)   p_kst 6.448598e-05   p_cons 2.531822e-01   p_joint 1.056075e-04

Joint ci ratio: 3.655223e-01	ci left: 8.707108e-05	ci right 1.268031e-04	k: 114	n:1080000
Cons ci ratio: 6.477973e-03	ci left: 2.523838e-01	ci right 2.540249e-01	k: 273460	n:1080000
KS ci ratio: 4.685142e-01	ci left: 4.970970e-05	ci right 8.085479e-05	k: 69	n:1080000
LPA   1080000 perm   804 sec   (1343 perm/sec)   p_kst 6.388889e-05   p_cons 2.532037e-01   p_joint 1.055556e-04

Joint ci ratio: 3.671223e-01	ci left: 8.543927e-05	ci right 1.246383e-04	k: 113	n:1090000
Cons ci ratio: 6.448847e-03	ci left: 2.523490e-01	ci right 2.539826e-01	k: 275950	n:1090000
KS ci ratio: 4.652030e-01	ci left: 5.006312e-05	ci right 8.113765e-05	k: 70	n:1090000
LPA   1090000 perm   816 sec   (1335 perm/sec)   p_kst 6.422018e-05   p_cons 2.531651e-01   p_joint 1.036697e-04

Joint ci ratio: 3.655226e-01	ci left: 8.548796e-05	ci right 1.244976e-04	k: 114	n:1100000
Cons ci ratio: 6.419616e-03	ci left: 2.523440e-01	ci right 2.539700e-01	k: 278472	n:1100000
KS ci ratio: 4.652032e-01	ci left: 4.960799e-05	ci right 8.040004e-05	k: 70	n:1100000
LPA   1100000 perm   828 sec   (1328 perm/sec)   p_kst 6.363636e-05   p_cons 2.531564e-01   p_joint 1.036364e-04

Joint ci ratio: 3.825346e-01	ci left: 7.655516e-05	ci right 1.135245e-04	k: 104	n:1110000
Cons ci ratio: 6.391449e-03	ci left: 2.522995e-01	ci right 2.539181e-01	k: 280950	n:1110000
KS ci ratio: 4.587860e-01	ci left: 5.075310e-05	ci right 8.168588e-05	k: 72	n:1110000
LPA   1110000 perm   840 sec   (1322 perm/sec)   p_kst 6.486486e-05   p_cons 2.531081e-01   p_joint 9.369369e-05

Joint ci ratio: 3.623850e-01	ci left: 8.558381e-05	ci right 1.242228e-04	k: 116	n:1120000
Cons ci ratio: 6.363755e-03	ci left: 2.522495e-01	ci right 2.538607e-01	k: 283421	n:1120000
KS ci ratio: 4.467099e-01	ci left: 5.346407e-05	ci right 8.493261e-05	k: 76	n:1120000
LPA   1120000 perm   852 sec   (1315 perm/sec)   p_kst 6.785714e-05   p_cons 2.530545e-01   p_joint 1.035714e-04

Joint ci ratio: 3.578262e-01	ci left: 8.724113e-05	ci right 1.260175e-04	k: 119	n:1130000
Cons ci ratio: 6.336121e-03	ci left: 2.522181e-01	ci right 2.538221e-01	k: 285912	n:1130000
KS ci ratio: 4.467100e-01	ci left: 5.299093e-05	ci right 8.418100e-05	k: 76	n:1130000
LPA   1130000 perm   863 sec   (1309 perm/sec)   p_kst 6.725664e-05   p_cons 2.530195e-01   p_joint 1.053097e-04

Joint ci ratio: 3.578264e-01	ci left: 8.647585e-05	ci right 1.249121e-04	k: 119	n:1140000
Cons ci ratio: 6.308463e-03	ci left: 2.522101e-01	ci right 2.538070e-01	k: 288429	n:1140000
KS ci ratio: 4.467102e-01	ci left: 5.252610e-05	ci right 8.344257e-05	k: 76	n:1140000
LPA   1140000 perm   875 sec   (1302 perm/sec)   p_kst 6.666667e-05   p_cons 2.530079e-01   p_joint 1.043860e-04

Joint ci ratio: 3.563447e-01	ci left: 8.651545e-05	ci right 1.247731e-04	k: 120	n:1150000
Cons ci ratio: 6.282060e-03	ci left: 2.521483e-01	ci right 2.537382e-01	k: 290884	n:1150000
KS ci ratio: 4.467103e-01	ci left: 5.206935e-05	ci right 8.271699e-05	k: 76	n:1150000
LPA   1150000 perm   888 sec   (1296 perm/sec)   p_kst 6.608696e-05   p_cons 2.529426e-01   p_joint 1.043478e-04

Joint ci ratio: 3.548813e-01	ci left: 8.655469e-05	ci right 1.246363e-04	k: 121	n:1160000
Cons ci ratio: 6.256243e-03	ci left: 2.520721e-01	ci right 2.536550e-01	k: 293321	n:1160000
KS ci ratio: 4.438375e-01	ci left: 5.238586e-05	ci right 8.296206e-05	k: 77	n:1160000
LPA   1160000 perm   900 sec   (1289 perm/sec)   p_kst 6.637931e-05   p_cons 2.528629e-01   p_joint 1.043103e-04

Joint ci ratio: 3.548815e-01	ci left: 8.581490e-05	ci right 1.235710e-04	k: 121	n:1170000
Cons ci ratio: 6.228838e-03	ci left: 2.521126e-01	ci right 2.536887e-01	k: 295893	n:1170000
KS ci ratio: 4.438376e-01	ci left: 5.193811e-05	ci right 8.225299e-05	k: 77	n:1170000
LPA   1170000 perm   912 sec   (1282 perm/sec)   p_kst 6.581197e-05   p_cons 2.529000e-01   p_joint 1.034188e-04

Joint ci ratio: 3.520077e-01	ci left: 8.663210e-05	ci right 1.243686e-04	k: 123	n:1180000
Cons ci ratio: 6.202083e-03	ci left: 2.521345e-01	ci right 2.537040e-01	k: 298444	n:1180000
KS ci ratio: 4.382543e-01	ci left: 5.300462e-05	ci right 8.343793e-05	k: 79	n:1180000
LPA   1180000 perm   924 sec   (1276 perm/sec)   p_kst 6.694915e-05   p_cons 2.529186e-01   p_joint 1.042373e-04

Joint ci ratio: 3.505969e-01	ci left: 8.667029e-05	ci right 1.242377e-04	k: 124	n:1190000
Cons ci ratio: 6.176589e-03	ci left: 2.520999e-01	ci right 2.536627e-01	k: 300928	n:1190000
KS ci ratio: 4.355405e-01	ci left: 5.330709e-05	ci right 8.366900e-05	k: 80	n:1190000
LPA   1190000 perm   937 sec   (1270 perm/sec)   p_kst 6.722689e-05   p_cons 2.528807e-01   p_joint 1.042017e-04

Joint ci ratio: 3.505971e-01	ci left: 8.594803e-05	ci right 1.232024e-04	k: 124	n:1200000
Cons ci ratio: 6.150851e-03	ci left: 2.521000e-01	ci right 2.536562e-01	k: 303453	n:1200000
KS ci ratio: 4.355407e-01	ci left: 5.286286e-05	ci right 8.297176e-05	k: 80	n:1200000
LPA   1200000 perm   949 sec   (1264 perm/sec)   p_kst 6.666667e-05   p_cons 2.528775e-01   p_joint 1.033333e-04

Joint ci ratio: 3.492030e-01	ci left: 8.599153e-05	ci right 1.230830e-04	k: 125	n:1210000
Cons ci ratio: 6.124589e-03	ci left: 2.521521e-01	ci right 2.537020e-01	k: 306041	n:1210000
KS ci ratio: 4.328767e-01	ci left: 5.316207e-05	ci right 8.320230e-05	k: 81	n:1210000
LPA   1210000 perm   962 sec   (1258 perm/sec)   p_kst 6.694215e-05   p_cons 2.529264e-01   p_joint 1.033058e-04

Joint ci ratio: 3.478255e-01	ci left: 8.603461e-05	ci right 1.229652e-04	k: 126	n:1220000
Cons ci ratio: 6.098620e-03	ci left: 2.522058e-01	ci right 2.537494e-01	k: 308632	n:1220000
KS ci ratio: 4.328769e-01	ci left: 5.272632e-05	ci right 8.252032e-05	k: 81	n:1220000
LPA   1220000 perm   975 sec   (1252 perm/sec)   p_kst 6.639344e-05   p_cons 2.529770e-01   p_joint 1.032787e-04

Joint ci ratio: 3.478257e-01	ci left: 8.533514e-05	ci right 1.219655e-04	k: 126	n:1230000
Cons ci ratio: 6.072691e-03	ci left: 2.522766e-01	ci right 2.538140e-01	k: 311245	n:1230000
KS ci ratio: 4.328770e-01	ci left: 5.229764e-05	ci right 8.184943e-05	k: 81	n:1230000
LPA   1230000 perm   988 sec   (1245 perm/sec)   p_kst 6.585366e-05   p_cons 2.530447e-01   p_joint 1.024390e-04

Joint ci ratio: 3.478258e-01	ci left: 8.464695e-05	ci right 1.209819e-04	k: 126	n:1240000
Cons ci ratio: 6.048264e-03	ci left: 2.522729e-01	ci right 2.538041e-01	k: 313767	n:1240000
KS ci ratio: 4.328771e-01	ci left: 5.187589e-05	ci right 8.118936e-05	k: 81	n:1240000
LPA   1240000 perm   1001 sec   (1238 perm/sec)   p_kst 6.532258e-05   p_cons 2.530379e-01   p_joint 1.016129e-04

Joint ci ratio: 3.451188e-01	ci left: 8.543056e-05	ci right 1.217528e-04	k: 128	n:1250000
Cons ci ratio: 6.024269e-03	ci left: 2.522604e-01	ci right 2.537855e-01	k: 316278	n:1250000
KS ci ratio: 4.328772e-01	ci left: 5.146088e-05	ci right 8.053985e-05	k: 81	n:1250000
LPA   1250000 perm   1015 sec   (1232 perm/sec)   p_kst 6.480000e-05   p_cons 2.530224e-01   p_joint 1.024000e-04

Joint ci ratio: 3.451190e-01	ci left: 8.475253e-05	ci right 1.207865e-04	k: 128	n:1260000
Cons ci ratio: 6.000269e-03	ci left: 2.522665e-01	ci right 2.537855e-01	k: 318812	n:1260000
KS ci ratio: 4.328773e-01	ci left: 5.105245e-05	ci right 7.990065e-05	k: 81	n:1260000
LPA   1260000 perm   1028 sec   (1226 perm/sec)   p_kst 6.428571e-05   p_cons 2.530254e-01   p_joint 1.015873e-04

Joint ci ratio: 3.451191e-01	ci left: 8.408518e-05	ci right 1.198354e-04	k: 128	n:1270000
Cons ci ratio: 5.976453e-03	ci left: 2.522787e-01	ci right 2.537917e-01	k: 321354	n:1270000
KS ci ratio: 4.328774e-01	ci left: 5.065046e-05	ci right 7.927152e-05	k: 81	n:1270000
LPA   1270000 perm   1041 sec   (1220 perm/sec)   p_kst 6.377953e-05   p_cons 2.530346e-01   p_joint 1.007874e-04

Joint ci ratio: 3.437891e-01	ci left: 8.414194e-05	ci right 1.197478e-04	k: 129	n:1280000
Cons ci ratio: 5.953484e-03	ci left: 2.522549e-01	ci right 2.537619e-01	k: 323850	n:1280000
KS ci ratio: 4.328775e-01	ci left: 5.025475e-05	ci right 7.865221e-05	k: 81	n:1280000
LPA   1280000 perm   1054 sec   (1214 perm/sec)   p_kst 6.328125e-05   p_cons 2.530078e-01   p_joint 1.007813e-04

Joint ci ratio: 3.437893e-01	ci left: 8.348967e-05	ci right 1.188195e-04	k: 129	n:1290000
Cons ci ratio: 5.930803e-03	ci left: 2.522298e-01	ci right 2.537310e-01	k: 326344	n:1290000
KS ci ratio: 4.328777e-01	ci left: 4.986518e-05	ci right 7.804251e-05	k: 81	n:1290000
LPA   1290000 perm   1067 sec   (1209 perm/sec)   p_kst 6.279070e-05   p_cons 2.529798e-01   p_joint 1.000000e-04

Joint ci ratio: 3.424746e-01	ci left: 8.355039e-05	ci right 1.187408e-04	k: 130	n:1300000
Cons ci ratio: 5.907897e-03	ci left: 2.522360e-01	ci right 2.537313e-01	k: 328878	n:1300000
KS ci ratio: 4.302620e-01	ci left: 5.016725e-05	ci right 7.829450e-05	k: 82	n:1300000
LPA   1300000 perm   1081 sec   (1203 perm/sec)   p_kst 6.307692e-05   p_cons 2.529831e-01   p_joint 1.000000e-04

Joint ci ratio: 3.437896e-01	ci left: 8.221501e-05	ci right 1.170055e-04	k: 129	n:1310000
Cons ci ratio: 5.885255e-03	ci left: 2.522420e-01	ci right 2.537316e-01	k: 331412	n:1310000
KS ci ratio: 4.302621e-01	ci left: 4.978429e-05	ci right 7.769683e-05	k: 82	n:1310000
LPA   1310000 perm   1094 sec   (1197 perm/sec)   p_kst 6.259542e-05   p_cons 2.529863e-01   p_joint 9.847328e-05

Joint ci ratio: 3.411750e-01	ci left: 8.297702e-05	ci right 1.177640e-04	k: 131	n:1320000
Cons ci ratio: 5.862273e-03	ci left: 2.522865e-01	ci right 2.537706e-01	k: 333997	n:1320000
KS ci ratio: 4.276933e-01	ci left: 5.008291e-05	ci right 7.794713e-05	k: 83	n:1320000
LPA   1320000 perm   1108 sec   (1192 perm/sec)   p_kst 6.287879e-05   p_cons 2.530280e-01   p_joint 9.924242e-05

Joint ci ratio: 3.411751e-01	ci left: 8.235313e-05	ci right 1.168786e-04	k: 131	n:1330000
Cons ci ratio: 5.838640e-03	ci left: 2.523898e-01	ci right 2.538684e-01	k: 336661	n:1330000
KS ci ratio: 4.276934e-01	ci left: 4.970634e-05	ci right 7.736107e-05	k: 83	n:1330000
LPA   1330000 perm   1122 sec   (1186 perm/sec)   p_kst 6.240602e-05   p_cons 2.531286e-01   p_joint 9.849624e-05

Joint ci ratio: 3.398901e-01	ci left: 8.242101e-05	ci right 1.168162e-04	k: 132	n:1340000
Cons ci ratio: 5.817172e-03	ci left: 2.523692e-01	ci right 2.538423e-01	k: 339161	n:1340000
KS ci ratio: 4.251701e-01	ci left: 5.000156e-05	ci right 7.760966e-05	k: 84	n:1340000
LPA   1340000 perm   1135 sec   (1181 perm/sec)   p_kst 6.268657e-05   p_cons 2.531052e-01   p_joint 9.850746e-05

Joint ci ratio: 3.398902e-01	ci left: 8.181048e-05	ci right 1.159509e-04	k: 132	n:1350000
Cons ci ratio: 5.795610e-03	ci left: 2.523704e-01	ci right 2.538380e-01	k: 341690	n:1350000
KS ci ratio: 4.226909e-01	ci left: 5.029288e-05	ci right 7.785410e-05	k: 85	n:1350000
LPA   1350000 perm   1148 sec   (1176 perm/sec)   p_kst 6.296296e-05   p_cons 2.531037e-01   p_joint 9.777778e-05

Joint ci ratio: 3.386196e-01	ci left: 8.188159e-05	ci right 1.158960e-04	k: 133	n:1360000
Cons ci ratio: 5.774231e-03	ci left: 2.523753e-01	ci right 2.538375e-01	k: 344224	n:1360000
KS ci ratio: 4.226910e-01	ci left: 4.992308e-05	ci right 7.728165e-05	k: 85	n:1360000
LPA   1360000 perm   1162 sec   (1171 perm/sec)   p_kst 6.250000e-05   p_cons 2.531059e-01   p_joint 9.779412e-05

Joint ci ratio: 3.373631e-01	ci left: 8.195190e-05	ci right 1.158417e-04	k: 134	n:1370000
Cons ci ratio: 5.753385e-03	ci left: 2.523604e-01	ci right 2.538173e-01	k: 346731	n:1370000
KS ci ratio: 4.202546e-01	ci left: 5.021117e-05	ci right 7.752446e-05	k: 86	n:1370000
LPA   1370000 perm   1175 sec   (1166 perm/sec)   p_kst 6.277372e-05   p_cons 2.530883e-01   p_joint 9.781022e-05

Joint ci ratio: 3.373633e-01	ci left: 8.135804e-05	ci right 1.150023e-04	k: 134	n:1380000
Cons ci ratio: 5.732127e-03	ci left: 2.523878e-01	ci right 2.538393e-01	k: 349296	n:1380000
KS ci ratio: 4.155056e-01	ci left: 5.114420e-05	ci right 7.856352e-05	k: 88	n:1380000
LPA   1380000 perm   1189 sec   (1161 perm/sec)   p_kst 6.376812e-05   p_cons 2.531130e-01   p_joint 9.710145e-05

Joint ci ratio: 3.361207e-01	ci left: 8.143133e-05	ci right 1.149550e-04	k: 135	n:1390000
Cons ci ratio: 5.711005e-03	ci left: 2.524212e-01	ci right 2.538676e-01	k: 351870	n:1390000
KS ci ratio: 4.155057e-01	ci left: 5.077625e-05	ci right 7.799832e-05	k: 88	n:1390000
LPA   1390000 perm   1202 sec   (1156 perm/sec)   p_kst 6.330935e-05   p_cons 2.531439e-01   p_joint 9.712230e-05

Joint ci ratio: 3.348917e-01	ci left: 8.150380e-05	ci right 1.149081e-04	k: 136	n:1400000
Cons ci ratio: 5.690717e-03	ci left: 2.524142e-01	ci right 2.538554e-01	k: 354388	n:1400000
KS ci ratio: 4.131909e-01	ci left: 5.105338e-05	ci right 7.822954e-05	k: 89	n:1400000
LPA   1400000 perm   1216 sec   (1151 perm/sec)   p_kst 6.357143e-05   p_cons 2.531343e-01   p_joint 9.714286e-05

Joint ci ratio: 3.336761e-01	ci left: 8.157545e-05	ci right 1.148617e-04	k: 137	n:1410000
Cons ci ratio: 5.669962e-03	ci left: 2.524526e-01	ci right 2.538888e-01	k: 356970	n:1410000
KS ci ratio: 4.109142e-01	ci left: 5.132699e-05	ci right 7.845707e-05	k: 90	n:1410000
LPA   1410000 perm   1230 sec   (1146 perm/sec)   p_kst 6.382979e-05   p_cons 2.531702e-01   p_joint 9.716312e-05

Joint ci ratio: 3.492057e-01	ci left: 7.327439e-05	ci right 1.048807e-04	k: 125	n:1420000
Cons ci ratio: 5.649549e-03	ci left: 2.524828e-01	ci right 2.539140e-01	k: 359541	n:1420000
KS ci ratio: 4.109143e-01	ci left: 5.096553e-05	ci right 7.790456e-05	k: 90	n:1420000
LPA   1420000 perm   1244 sec   (1141 perm/sec)   p_kst 6.338028e-05   p_cons 2.531979e-01   p_joint 8.802817e-05

Joint ci ratio: 3.492058e-01	ci left: 7.276198e-05	ci right 1.041473e-04	k: 125	n:1430000
Cons ci ratio: 5.629542e-03	ci left: 2.525000e-01	ci right 2.539262e-01	k: 362094	n:1430000
KS ci ratio: 4.086750e-01	ci left: 5.123633e-05	ci right 7.813079e-05	k: 91	n:1430000
LPA   1430000 perm   1258 sec   (1137 perm/sec)   p_kst 6.363636e-05   p_cons 2.532126e-01   p_joint 8.741259e-05

Joint ci ratio: 3.492060e-01	ci left: 7.225668e-05	ci right 1.034240e-04	k: 125	n:1440000
Cons ci ratio: 5.609499e-03	ci left: 2.525336e-01	ci right 2.539549e-01	k: 364671	n:1440000
KS ci ratio: 4.064718e-01	ci left: 5.150376e-05	ci right 7.835348e-05	k: 92	n:1440000
LPA   1440000 perm   1272 sec   (1132 perm/sec)   p_kst 6.388889e-05   p_cons 2.532437e-01   p_joint 8.680556e-05

Joint ci ratio: 3.492061e-01	ci left: 7.175836e-05	ci right 1.027108e-04	k: 125	n:1450000
Cons ci ratio: 5.590310e-03	ci left: 2.525234e-01	ci right 2.539397e-01	k: 367185	n:1450000
KS ci ratio: 4.064719e-01	ci left: 5.114856e-05	ci right 7.781312e-05	k: 92	n:1450000
LPA   1450000 perm   1286 sec   (1127 perm/sec)   p_kst 6.344828e-05   p_cons 2.532310e-01   p_joint 8.620690e-05

Joint ci ratio: 3.492062e-01	ci left: 7.126686e-05	ci right 1.020073e-04	k: 125	n:1460000
Cons ci ratio: 5.571519e-03	ci left: 2.524996e-01	ci right 2.539110e-01	k: 369679	n:1460000
KS ci ratio: 4.064720e-01	ci left: 5.079823e-05	ci right 7.728016e-05	k: 92	n:1460000
LPA   1460000 perm   1300 sec   (1123 perm/sec)   p_kst 6.301370e-05   p_cons 2.532048e-01   p_joint 8.561644e-05

Joint ci ratio: 3.492063e-01	ci left: 7.078204e-05	ci right 1.013134e-04	k: 125	n:1470000
Cons ci ratio: 5.553445e-03	ci left: 2.524401e-01	ci right 2.538466e-01	k: 372120	n:1470000
KS ci ratio: 4.064721e-01	ci left: 5.045266e-05	ci right 7.675444e-05	k: 92	n:1470000
LPA   1470000 perm   1315 sec   (1118 perm/sec)   p_kst 6.258503e-05   p_cons 2.531429e-01   p_joint 8.503401e-05

Joint ci ratio: 3.655276e-01	ci left: 6.353821e-05	ci right 9.253227e-05	k: 114	n:1480000
Cons ci ratio: 5.534458e-03	ci left: 2.524557e-01	ci right 2.538574e-01	k: 374671	n:1480000
KS ci ratio: 4.064722e-01	ci left: 5.011176e-05	ci right 7.623584e-05	k: 92	n:1480000
LPA   1480000 perm   1331 sec   (1112 perm/sec)   p_kst 6.216216e-05   p_cons 2.531561e-01   p_joint 7.702703e-05

Joint ci ratio: 3.639486e-01	ci left: 6.372141e-05	ci right 9.264364e-05	k: 115	n:1490000
Cons ci ratio: 5.515489e-03	ci left: 2.524832e-01	ci right 2.538802e-01	k: 377240	n:1490000
KS ci ratio: 4.043042e-01	ci left: 5.037814e-05	ci right 7.646341e-05	k: 93	n:1490000
LPA   1490000 perm   1346 sec   (1107 perm/sec)   p_kst 6.241611e-05   p_cons 2.531812e-01   p_joint 7.718121e-05

Joint ci ratio: 3.639487e-01	ci left: 6.329660e-05	ci right 9.202602e-05	k: 115	n:1500000
Cons ci ratio: 5.497488e-03	ci left: 2.524570e-01	ci right 2.538493e-01	k: 379729	n:1500000
KS ci ratio: 4.043043e-01	ci left: 5.004228e-05	ci right 7.595366e-05	k: 93	n:1500000
LPA   1500000 perm   1361 sec   (1102 perm/sec)   p_kst 6.200000e-05   p_cons 2.531527e-01   p_joint 7.666667e-05

Joint ci ratio: 3.608510e-01	ci left: 6.408133e-05	ci right 9.286116e-05	k: 117	n:1510000
Cons ci ratio: 5.478751e-03	ci left: 2.524940e-01	ci right 2.538818e-01	k: 382313	n:1510000
KS ci ratio: 4.043044e-01	ci left: 4.971088e-05	ci right 7.545066e-05	k: 93	n:1510000
LPA   1510000 perm   1376 sec   (1098 perm/sec)   p_kst 6.158940e-05   p_cons 2.531874e-01   p_joint 7.748344e-05

Joint ci ratio: 3.593316e-01	ci left: 6.425812e-05	ci right 9.296740e-05	k: 118	n:1520000
Cons ci ratio: 5.460736e-03	ci left: 2.524937e-01	ci right 2.538769e-01	k: 384841	n:1520000
KS ci ratio: 4.021708e-01	ci left: 4.997500e-05	ci right 7.567855e-05	k: 94	n:1520000
LPA   1520000 perm   1391 sec   (1093 perm/sec)   p_kst 6.184211e-05   p_cons 2.531849e-01   p_joint 7.763158e-05

Joint ci ratio: 3.578313e-01	ci left: 6.443285e-05	ci right 9.307200e-05	k: 119	n:1530000
Cons ci ratio: 5.442737e-03	ci left: 2.525046e-01	ci right 2.538833e-01	k: 387386	n:1530000
KS ci ratio: 4.000706e-01	ci left: 5.023602e-05	ci right 7.590312e-05	k: 95	n:1530000
LPA   1530000 perm   1409 sec   (1086 perm/sec)   p_kst 6.209150e-05   p_cons 2.531935e-01   p_joint 7.777778e-05

Joint ci ratio: 3.578313e-01	ci left: 6.401445e-05	ci right 9.246764e-05	k: 119	n:1540000
Cons ci ratio: 5.425232e-03	ci left: 2.524932e-01	ci right 2.538674e-01	k: 389897	n:1540000
KS ci ratio: 4.000707e-01	ci left: 4.990981e-05	ci right 7.541024e-05	k: 95	n:1540000
LPA   1540000 perm   1424 sec   (1081 perm/sec)   p_kst 6.168831e-05   p_cons 2.531799e-01   p_joint 7.727273e-05

Joint ci ratio: 3.548860e-01	ci left: 6.477628e-05	ci right 9.327643e-05	k: 121	n:1550000
Cons ci ratio: 5.408486e-03	ci left: 2.524408e-01	ci right 2.538104e-01	k: 392344	n:1550000
KS ci ratio: 3.980031e-01	ci left: 5.016822e-05	ci right 7.563331e-05	k: 96	n:1550000
LPA   1550000 perm   1439 sec   (1077 perm/sec)   p_kst 6.193548e-05   p_cons 2.531252e-01   p_joint 7.806452e-05

Joint ci ratio: 3.534404e-01	ci left: 6.494504e-05	ci right 9.337632e-05	k: 122	n:1560000
Cons ci ratio: 5.390924e-03	ci left: 2.524569e-01	ci right 2.538222e-01	k: 394897	n:1560000
KS ci ratio: 3.980032e-01	ci left: 4.984663e-05	ci right 7.514848e-05	k: 96	n:1560000
LPA   1560000 perm   1454 sec   (1073 perm/sec)   p_kst 6.153846e-05   p_cons 2.531391e-01   p_joint 7.820513e-05

Joint ci ratio: 3.534405e-01	ci left: 6.453138e-05	ci right 9.278157e-05	k: 122	n:1570000
Cons ci ratio: 5.373089e-03	ci left: 2.525040e-01	ci right 2.538650e-01	k: 397499	n:1570000
KS ci ratio: 3.959673e-01	ci left: 5.010248e-05	ci right 7.537004e-05	k: 97	n:1570000
LPA   1570000 perm   1470 sec   (1068 perm/sec)   p_kst 6.178344e-05   p_cons 2.531841e-01   p_joint 7.770701e-05

Joint ci ratio: 3.534406e-01	ci left: 6.412295e-05	ci right 9.219435e-05	k: 122	n:1580000
Cons ci ratio: 5.356353e-03	ci left: 2.524854e-01	ci right 2.538421e-01	k: 399998	n:1580000
KS ci ratio: 3.959674e-01	ci left: 4.978538e-05	ci right 7.489302e-05	k: 97	n:1580000
LPA   1580000 perm   1486 sec   (1064 perm/sec)   p_kst 6.139241e-05   p_cons 2.531633e-01   p_joint 7.721519e-05

Joint ci ratio: 3.548864e-01	ci left: 6.314667e-05	ci right 9.092987e-05	k: 121	n:1590000
Cons ci ratio: 5.339728e-03	ci left: 2.524702e-01	ci right 2.538225e-01	k: 402502	n:1590000
KS ci ratio: 3.959675e-01	ci left: 4.947226e-05	ci right 7.442200e-05	k: 97	n:1590000
LPA   1590000 perm   1501 sec   (1059 perm/sec)   p_kst 6.100629e-05   p_cons 2.531459e-01   p_joint 7.610063e-05

Joint ci ratio: 3.687494e-01	ci left: 5.763812e-05	ci right 8.422759e-05	k: 112	n:1600000
Cons ci ratio: 5.323196e-03	ci left: 2.524595e-01	ci right 2.538076e-01	k: 405013	n:1600000
KS ci ratio: 3.959675e-01	ci left: 4.916306e-05	ci right 7.395687e-05	k: 97	n:1600000
LPA   1600000 perm   1516 sec   (1055 perm/sec)   p_kst 6.062500e-05   p_cons 2.531331e-01   p_joint 7.000000e-05

Joint ci ratio: 3.671285e-01	ci left: 5.784381e-05	ci right 8.438273e-05	k: 113	n:1610000
Cons ci ratio: 5.306676e-03	ci left: 2.524589e-01	ci right 2.538028e-01	k: 407540	n:1610000
KS ci ratio: 3.919877e-01	ci left: 4.997687e-05	ci right 7.486220e-05	k: 99	n:1610000
LPA   1610000 perm   1532 sec   (1051 perm/sec)   p_kst 6.149068e-05   p_cons 2.531304e-01   p_joint 7.018634e-05

Joint ci ratio: 3.671286e-01	ci left: 5.748675e-05	ci right 8.386186e-05	k: 113	n:1620000
Cons ci ratio: 5.290093e-03	ci left: 2.524738e-01	ci right 2.538135e-01	k: 410092	n:1620000
KS ci ratio: 3.919878e-01	ci left: 4.966836e-05	ci right 7.440009e-05	k: 99	n:1620000
LPA   1620000 perm   1547 sec   (1047 perm/sec)   p_kst 6.111111e-05   p_cons 2.531432e-01   p_joint 6.975309e-05

Joint ci ratio: 3.655289e-01	ci left: 5.769110e-05	ci right 8.401709e-05	k: 114	n:1630000
Cons ci ratio: 5.274033e-03	ci left: 2.524621e-01	ci right 2.537977e-01	k: 412601	n:1630000
KS ci ratio: 3.900424e-01	ci left: 4.991683e-05	ci right 7.461717e-05	k: 100	n:1630000
LPA   1630000 perm   1563 sec   (1043 perm/sec)   p_kst 6.134969e-05   p_cons 2.531294e-01   p_joint 6.993865e-05

Joint ci ratio: 3.639499e-01	ci left: 5.789320e-05	ci right 8.417019e-05	k: 115	n:1640000
Cons ci ratio: 5.258178e-03	ci left: 2.524463e-01	ci right 2.537778e-01	k: 415103	n:1640000
KS ci ratio: 3.900424e-01	ci left: 4.961246e-05	ci right 7.416219e-05	k: 100	n:1640000
LPA   1640000 perm   1579 sec   (1039 perm/sec)   p_kst 6.097561e-05   p_cons 2.531116e-01   p_joint 7.012195e-05

Joint ci ratio: 3.639500e-01	ci left: 5.754233e-05	ci right 8.366007e-05	k: 115	n:1650000
Cons ci ratio: 5.242414e-03	ci left: 2.524343e-01	ci right 2.537617e-01	k: 417611	n:1650000
KS ci ratio: 3.881257e-01	ci left: 4.985855e-05	ci right 7.437779e-05	k: 101	n:1650000
LPA   1650000 perm   1594 sec   (1035 perm/sec)   p_kst 6.121212e-05   p_cons 2.530976e-01   p_joint 6.969697e-05

Joint ci ratio: 3.639500e-01	ci left: 5.719569e-05	ci right 8.315610e-05	k: 115	n:1660000
Cons ci ratio: 5.226616e-03	ci left: 2.524351e-01	ci right 2.537585e-01	k: 420140	n:1660000
KS ci ratio: 3.843755e-01	ci left: 5.064602e-05	ci right 7.525098e-05	k: 103	n:1660000
LPA   1660000 perm   1610 sec   (1031 perm/sec)   p_kst 6.204819e-05   p_cons 2.530964e-01   p_joint 6.927711e-05

Joint ci ratio: 3.608524e-01	ci left: 5.794176e-05	ci right 8.396434e-05	k: 117	n:1670000
Cons ci ratio: 5.211522e-03	ci left: 2.523952e-01	ci right 2.537146e-01	k: 422601	n:1670000
KS ci ratio: 3.843755e-01	ci left: 5.034275e-05	ci right 7.480038e-05	k: 103	n:1670000
LPA   1670000 perm   1626 sec   (1027 perm/sec)   p_kst 6.167665e-05   p_cons 2.530545e-01   p_joint 7.005988e-05

Joint ci ratio: 3.578325e-01	ci left: 5.867988e-05	ci right 8.476205e-05	k: 119	n:1680000
Cons ci ratio: 5.196541e-03	ci left: 2.523570e-01	ci right 2.536724e-01	k: 425064	n:1680000
KS ci ratio: 3.825408e-01	ci left: 5.058095e-05	ci right 7.500749e-05	k: 104	n:1680000
LPA   1680000 perm   1642 sec   (1023 perm/sec)   p_kst 6.190476e-05   p_cons 2.530143e-01   p_joint 7.083333e-05

Joint ci ratio: 3.578326e-01	ci left: 5.833266e-05	ci right 8.426051e-05	k: 119	n:1690000
Cons ci ratio: 5.181323e-03	ci left: 2.523459e-01	ci right 2.536573e-01	k: 427572	n:1690000
KS ci ratio: 3.825408e-01	ci left: 5.028165e-05	ci right 7.456366e-05	k: 104	n:1690000
LPA   1690000 perm   1658 sec   (1019 perm/sec)   p_kst 6.153846e-05   p_cons 2.530012e-01   p_joint 7.041420e-05

Joint ci ratio: 3.578327e-01	ci left: 5.798953e-05	ci right 8.376486e-05	k: 119	n:1700000
Cons ci ratio: 5.166206e-03	ci left: 2.523372e-01	ci right 2.536448e-01	k: 430084	n:1700000
KS ci ratio: 3.825409e-01	ci left: 4.998587e-05	ci right 7.412505e-05	k: 104	n:1700000
LPA   1700000 perm   1674 sec   (1016 perm/sec)   p_kst 6.117647e-05   p_cons 2.529906e-01   p_joint 7.000000e-05

Joint ci ratio: 3.548874e-01	ci left: 5.871530e-05	ci right 8.454887e-05	k: 121	n:1710000
Cons ci ratio: 5.150384e-03	ci left: 2.523900e-01	ci right 2.536939e-01	k: 432701	n:1710000
KS ci ratio: 3.825410e-01	ci left: 4.969356e-05	ci right 7.369158e-05	k: 104	n:1710000
LPA   1710000 perm   1690 sec   (1012 perm/sec)   p_kst 6.081871e-05   p_cons 2.530415e-01   p_joint 7.076023e-05

Joint ci ratio: 3.548874e-01	ci left: 5.837393e-05	ci right 8.405731e-05	k: 121	n:1720000
Cons ci ratio: 5.134983e-03	ci left: 2.524219e-01	ci right 2.537220e-01	k: 435283	n:1720000
KS ci ratio: 3.807322e-01	ci left: 4.993026e-05	ci right 7.390005e-05	k: 105	n:1720000
LPA   1720000 perm   1707 sec   (1008 perm/sec)   p_kst 6.104651e-05   p_cons 2.530715e-01   p_joint 7.034884e-05

Joint ci ratio: 3.548875e-01	ci left: 5.803651e-05	ci right 8.357143e-05	k: 121	n:1730000
Cons ci ratio: 5.120158e-03	ci left: 2.524210e-01	ci right 2.537174e-01	k: 437809	n:1730000
KS ci ratio: 3.807323e-01	ci left: 4.964165e-05	ci right 7.347288e-05	k: 105	n:1730000
LPA   1730000 perm   1723 sec   (1004 perm/sec)   p_kst 6.069364e-05   p_cons 2.530688e-01   p_joint 6.994220e-05

Joint ci ratio: 3.548876e-01	ci left: 5.770296e-05	ci right 8.309114e-05	k: 121	n:1740000
Cons ci ratio: 5.105677e-03	ci left: 2.524041e-01	ci right 2.536967e-01	k: 440307	n:1740000
KS ci ratio: 3.789489e-01	ci left: 4.987619e-05	ci right 7.367996e-05	k: 106	n:1740000
LPA   1740000 perm   1740 sec   (1000 perm/sec)   p_kst 6.091954e-05   p_cons 2.530500e-01   p_joint 6.954023e-05

Joint ci ratio: 3.548877e-01	ci left: 5.737323e-05	ci right 8.261633e-05	k: 121	n:1750000
Cons ci ratio: 5.090788e-03	ci left: 2.524268e-01	ci right 2.537157e-01	k: 442874	n:1750000
KS ci ratio: 3.789490e-01	ci left: 4.959118e-05	ci right 7.325893e-05	k: 106	n:1750000
LPA   1750000 perm   1757 sec   (996 perm/sec)   p_kst 6.057143e-05   p_cons 2.530709e-01   p_joint 6.914286e-05

Joint ci ratio: 3.548877e-01	ci left: 5.704724e-05	ci right 8.214693e-05	k: 121	n:1760000
Cons ci ratio: 5.076608e-03	ci left: 2.524061e-01	ci right 2.536913e-01	k: 445365	n:1760000
KS ci ratio: 3.789491e-01	ci left: 4.930941e-05	ci right 7.284269e-05	k: 106	n:1760000
LPA   1760000 perm   1774 sec   (992 perm/sec)   p_kst 6.022727e-05   p_cons 2.530483e-01   p_joint 6.875000e-05

Joint ci ratio: 3.548878e-01	ci left: 5.672494e-05	ci right 8.168282e-05	k: 121	n:1770000
Cons ci ratio: 5.062099e-03	ci left: 2.524189e-01	ci right 2.537005e-01	k: 447915	n:1770000
KS ci ratio: 3.789491e-01	ci left: 4.903083e-05	ci right 7.243115e-05	k: 106	n:1770000
LPA   1770000 perm   1791 sec   (988 perm/sec)   p_kst 5.988701e-05   p_cons 2.530593e-01   p_joint 6.836158e-05

Joint ci ratio: 3.534422e-01	ci left: 5.691808e-05	ci right 8.183551e-05	k: 122	n:1780000
Cons ci ratio: 5.048314e-03	ci left: 2.523867e-01	ci right 2.536646e-01	k: 450385	n:1780000
KS ci ratio: 3.771906e-01	ci left: 4.926378e-05	ci right 7.263918e-05	k: 107	n:1780000
LPA   1780000 perm   1808 sec   (985 perm/sec)   p_kst 6.011236e-05   p_cons 2.530253e-01   p_joint 6.853933e-05

Joint ci ratio: 3.534423e-01	ci left: 5.660010e-05	ci right 8.137833e-05	k: 122	n:1790000
Cons ci ratio: 5.033979e-03	ci left: 2.524046e-01	ci right 2.536789e-01	k: 452944	n:1790000
KS ci ratio: 3.771907e-01	ci left: 4.898856e-05	ci right 7.223338e-05	k: 107	n:1790000
LPA   1790000 perm   1824 sec   (981 perm/sec)   p_kst 5.977654e-05   p_cons 2.530413e-01   p_joint 6.815642e-05

Joint ci ratio: 3.506032e-01	ci left: 5.729853e-05	ci right 8.213519e-05	k: 124	n:1800000
Cons ci ratio: 5.020053e-03	ci left: 2.524006e-01	ci right 2.536713e-01	k: 455464	n:1800000
KS ci ratio: 3.754564e-01	ci left: 4.921941e-05	ci right 7.243994e-05	k: 108	n:1800000
LPA   1800000 perm   1842 sec   (977 perm/sec)   p_kst 6.000000e-05   p_cons 2.530356e-01   p_joint 6.888889e-05

Joint ci ratio: 3.361245e-01	ci left: 6.253555e-05	ci right 8.828052e-05	k: 135	n:1810000
Cons ci ratio: 4.928159e-03	ci left: 2.583801e-01	ci right 2.596571e-01	k: 468823	n:1810000
KS ci ratio: 3.720584e-01	ci left: 4.994867e-05	ci right 7.324802e-05	k: 110	n:1810000
LPA   1810000 perm   1859 sec   (974 perm/sec)   p_kst 6.077348e-05   p_cons 2.590182e-01   p_joint 7.458564e-05

Joint ci ratio: 3.361246e-01	ci left: 6.219195e-05	ci right 8.779547e-05	k: 135	n:1820000
Cons ci ratio: 4.914040e-03	ci left: 2.584257e-01	ci right 2.596993e-01	k: 471493	n:1820000
KS ci ratio: 3.720585e-01	ci left: 4.967422e-05	ci right 7.284556e-05	k: 110	n:1820000
LPA   1820000 perm   1877 sec   (970 perm/sec)   p_kst 6.043956e-05   p_cons 2.590621e-01   p_joint 7.417582e-05

Joint ci ratio: 3.411798e-01	ci left: 5.985215e-05	ci right 8.494477e-05	k: 131	n:1830000
Cons ci ratio: 4.901018e-03	ci left: 2.583943e-01	ci right 2.596644e-01	k: 474023	n:1830000
KS ci ratio: 3.720585e-01	ci left: 4.940278e-05	ci right 7.244750e-05	k: 110	n:1830000
LPA   1830000 perm   1894 sec   (966 perm/sec)   p_kst 6.010929e-05   p_cons 2.590290e-01   p_joint 7.158470e-05

Joint ci ratio: 3.398947e-01	ci left: 6.002387e-05	ci right 8.507289e-05	k: 132	n:1840000
Cons ci ratio: 4.887691e-03	ci left: 2.583954e-01	ci right 2.596619e-01	k: 476612	n:1840000
KS ci ratio: 3.703938e-01	ci left: 4.962706e-05	ci right 7.264772e-05	k: 111	n:1840000
LPA   1840000 perm   1912 sec   (963 perm/sec)   p_kst 6.032609e-05   p_cons 2.590283e-01   p_joint 7.173913e-05

Joint ci ratio: 3.398948e-01	ci left: 5.969942e-05	ci right 8.461304e-05	k: 132	n:1850000
Cons ci ratio: 4.874561e-03	ci left: 2.583894e-01	ci right 2.596525e-01	k: 479188	n:1850000
KS ci ratio: 3.703939e-01	ci left: 4.935880e-05	ci right 7.225503e-05	k: 111	n:1850000
LPA   1850000 perm   1929 sec   (959 perm/sec)   p_kst 6.000000e-05   p_cons 2.590205e-01   p_joint 7.135135e-05

Joint ci ratio: 3.398949e-01	ci left: 5.937845e-05	ci right 8.415813e-05	k: 132	n:1860000
Cons ci ratio: 4.861346e-03	ci left: 2.583985e-01	ci right 2.596582e-01	k: 481792	n:1860000
KS ci ratio: 3.687513e-01	ci left: 4.958114e-05	ci right 7.245391e-05	k: 112	n:1860000
LPA   1860000 perm   1946 sec   (956 perm/sec)   p_kst 6.021505e-05   p_cons 2.590280e-01   p_joint 7.096774e-05

Joint ci ratio: 3.398949e-01	ci left: 5.906092e-05	ci right 8.370809e-05	k: 132	n:1870000
Cons ci ratio: 4.848231e-03	ci left: 2.584080e-01	ci right 2.596644e-01	k: 484397	n:1870000
KS ci ratio: 3.687513e-01	ci left: 4.931600e-05	ci right 7.206646e-05	k: 112	n:1870000
LPA   1870000 perm   1964 sec   (952 perm/sec)   p_kst 5.989305e-05   p_cons 2.590358e-01   p_joint 7.058824e-05

Joint ci ratio: 3.386243e-01	ci left: 5.923337e-05	ci right 8.383989e-05	k: 133	n:1880000
Cons ci ratio: 4.835476e-03	ci left: 2.583973e-01	ci right 2.596503e-01	k: 486964	n:1880000
KS ci ratio: 3.687514e-01	ci left: 4.905368e-05	ci right 7.168313e-05	k: 112	n:1880000
LPA   1880000 perm   1981 sec   (949 perm/sec)   p_kst 5.957447e-05   p_cons 2.590234e-01   p_joint 7.074468e-05

Joint ci ratio: 3.373677e-01	ci left: 5.940416e-05	ci right 8.397014e-05	k: 134	n:1890000
Cons ci ratio: 4.822715e-03	ci left: 2.583951e-01	ci right 2.596448e-01	k: 489547	n:1890000
KS ci ratio: 3.655307e-01	ci left: 4.975472e-05	ci right 7.245926e-05	k: 114	n:1890000
LPA   1890000 perm   1999 sec   (945 perm/sec)   p_kst 6.031746e-05   p_cons 2.590196e-01   p_joint 7.089947e-05

Joint ci ratio: 3.361251e-01	ci left: 5.957333e-05	ci right 8.409884e-05	k: 135	n:1900000
Cons ci ratio: 4.810167e-03	ci left: 2.583840e-01	ci right 2.596304e-01	k: 492113	n:1900000
KS ci ratio: 3.655307e-01	ci left: 4.949285e-05	ci right 7.207789e-05	k: 114	n:1900000
LPA   1900000 perm   2017 sec   (942 perm/sec)   p_kst 6.000000e-05   p_cons 2.590068e-01   p_joint 7.105263e-05

Joint ci ratio: 3.348961e-01	ci left: 5.974088e-05	ci right 8.422604e-05	k: 136	n:1910000
Cons ci ratio: 4.797166e-03	ci left: 2.584170e-01	ci right 2.596602e-01	k: 494763	n:1910000
KS ci ratio: 3.639517e-01	ci left: 4.970930e-05	ci right 7.227186e-05	k: 115	n:1910000
LPA   1910000 perm   2036 sec   (938 perm/sec)   p_kst 6.020942e-05   p_cons 2.590382e-01   p_joint 7.120419e-05

Joint ci ratio: 3.348962e-01	ci left: 5.942973e-05	ci right 8.378736e-05	k: 136	n:1920000
Cons ci ratio: 4.784614e-03	ci left: 2.584221e-01	ci right 2.596620e-01	k: 497360	n:1920000
KS ci ratio: 3.639518e-01	ci left: 4.945040e-05	ci right 7.189545e-05	k: 115	n:1920000
LPA   1920000 perm   2054 sec   (935 perm/sec)   p_kst 5.989583e-05   p_cons 2.590417e-01   p_joint 7.083333e-05

Joint ci ratio: 3.348962e-01	ci left: 5.912180e-05	ci right 8.335323e-05	k: 136	n:1930000
Cons ci ratio: 4.772688e-03	ci left: 2.583846e-01	ci right 2.596213e-01	k: 499875	n:1930000
KS ci ratio: 3.639518e-01	ci left: 4.919418e-05	ci right 7.152293e-05	k: 115	n:1930000
LPA   1930000 perm   2072 sec   (932 perm/sec)   p_kst 5.958549e-05   p_cons 2.590026e-01   p_joint 7.046632e-05

Joint ci ratio: 3.348963e-01	ci left: 5.881705e-05	ci right 8.292358e-05	k: 136	n:1940000
Cons ci ratio: 4.760001e-03	ci left: 2.584161e-01	ci right 2.596496e-01	k: 502523	n:1940000
KS ci ratio: 3.639519e-01	ci left: 4.894060e-05	ci right 7.115426e-05	k: 115	n:1940000
LPA   1940000 perm   2090 sec   (928 perm/sec)   p_kst 5.927835e-05   p_cons 2.590325e-01   p_joint 7.010309e-05

Joint ci ratio: 3.424804e-01	ci left: 5.570012e-05	ci right 7.916076e-05	k: 130	n:1950000
Cons ci ratio: 4.747916e-03	ci left: 2.584067e-01	ci right 2.596370e-01	k: 505092	n:1950000
KS ci ratio: 3.623932e-01	ci left: 4.915565e-05	ci right 7.134878e-05	k: 116	n:1950000
LPA   1950000 perm   2109 sec   (925 perm/sec)   p_kst 5.948718e-05   p_cons 2.590215e-01   p_joint 6.666667e-05

Joint ci ratio: 3.398955e-01	ci left: 5.634892e-05	ci right 7.986438e-05	k: 132	n:1960000
Cons ci ratio: 4.735827e-03	ci left: 2.584051e-01	ci right 2.596323e-01	k: 507676	n:1960000
KS ci ratio: 3.608543e-01	ci left: 4.936871e-05	ci right 7.154112e-05	k: 117	n:1960000
LPA   1960000 perm   2127 sec   (921 perm/sec)   p_kst 5.969388e-05   p_cons 2.590184e-01   p_joint 6.734694e-05

Joint ci ratio: 3.386248e-01	ci left: 5.652726e-05	ci right 8.000967e-05	k: 133	n:1970000
Cons ci ratio: 4.723787e-03	ci left: 2.584071e-01	ci right 2.596312e-01	k: 510267	n:1970000
KS ci ratio: 3.608544e-01	ci left: 4.911810e-05	ci right 7.117797e-05	k: 117	n:1970000
LPA   1970000 perm   2146 sec   (918 perm/sec)   p_kst 5.939086e-05   p_cons 2.590188e-01   p_joint 6.751269e-05

Joint ci ratio: 3.386249e-01	ci left: 5.624177e-05	ci right 7.960558e-05	k: 133	n:1980000
Cons ci ratio: 4.711826e-03	ci left: 2.584101e-01	ci right 2.596310e-01	k: 512860	n:1980000
KS ci ratio: 3.608544e-01	ci left: 4.887003e-05	ci right 7.081849e-05	k: 117	n:1980000
LPA   1980000 perm   2164 sec   (915 perm/sec)   p_kst 5.909091e-05   p_cons 2.590202e-01   p_joint 6.717172e-05

Joint ci ratio: 3.361257e-01	ci left: 5.687904e-05	ci right 8.029540e-05	k: 135	n:1990000
Cons ci ratio: 4.699998e-03	ci left: 2.584095e-01	ci right 2.596274e-01	k: 515446	n:1990000
KS ci ratio: 3.593350e-01	ci left: 4.908150e-05	ci right 7.101040e-05	k: 118	n:1990000
LPA   1990000 perm   2182 sec   (912 perm/sec)   p_kst 5.929648e-05   p_cons 2.590181e-01   p_joint 6.783920e-05

Joint ci ratio: 2.065835e-01	ci left: 1.614114e-04	ci right 1.990609e-04	k: 359	n:2000000
Cons ci ratio: 4.688534e-03	ci left: 2.583865e-01	ci right 2.596012e-01	k: 517987	n:2000000
KS ci ratio: 3.578346e-01	ci left: 4.929106e-05	ci right 7.120020e-05	k: 119	n:2000000
LPA   2000000 perm   2201 sec   (909 perm/sec)   p_kst 5.950000e-05   p_cons 2.589935e-01   p_joint 1.795000e-04

Joint ci ratio: 2.060120e-01	ci left: 1.615520e-04	ci right 1.991169e-04	k: 361	n:2010000
Cons ci ratio: 4.676765e-03	ci left: 2.583955e-01	ci right 2.596072e-01	k: 520592	n:2010000
KS ci ratio: 3.563528e-01	ci left: 4.949871e-05	ci right 7.138793e-05	k: 120	n:2010000
LPA   2010000 perm   2219 sec   (906 perm/sec)   p_kst 5.970149e-05   p_cons 2.590010e-01   p_joint 1.796020e-04

Joint ci ratio: 2.054453e-01	ci left: 1.616913e-04	ci right 1.991722e-04	k: 363	n:2020000
Cons ci ratio: 4.665235e-03	ci left: 2.583920e-01	ci right 2.596008e-01	k: 523172	n:2020000
KS ci ratio: 3.548893e-01	ci left: 4.970449e-05	ci right 7.157362e-05	k: 121	n:2020000
LPA   2020000 perm   2237 sec   (903 perm/sec)   p_kst 5.990099e-05   p_cons 2.589960e-01   p_joint 1.797030e-04

Joint ci ratio: 2.054454e-01	ci left: 1.608948e-04	ci right 1.981910e-04	k: 363	n:2030000
Cons ci ratio: 4.653586e-03	ci left: 2.584053e-01	ci right 2.596111e-01	k: 525786	n:2030000
KS ci ratio: 3.548894e-01	ci left: 4.945964e-05	ci right 7.122104e-05	k: 121	n:2030000
LPA   2030000 perm   2256 sec   (900 perm/sec)   p_kst 5.960591e-05   p_cons 2.590079e-01   p_joint 1.788177e-04

Joint ci ratio: 2.043256e-01	ci left: 1.619663e-04	ci right 1.992807e-04	k: 367	n:2040000
Cons ci ratio: 4.642001e-03	ci left: 2.584205e-01	ci right 2.596233e-01	k: 528404	n:2040000
KS ci ratio: 3.548894e-01	ci left: 4.921719e-05	ci right 7.087192e-05	k: 121	n:2040000
LPA   2040000 perm   2276 sec   (896 perm/sec)   p_kst 5.931373e-05   p_cons 2.590216e-01   p_joint 1.799020e-04

Joint ci ratio: 2.065839e-01	ci left: 1.574745e-04	ci right 1.942058e-04	k: 359	n:2050000
Cons ci ratio: 4.631137e-03	ci left: 2.583829e-01	ci right 2.595827e-01	k: 530914	n:2050000
KS ci ratio: 3.548895e-01	ci left: 4.897711e-05	ci right 7.052621e-05	k: 121	n:2050000
LPA   2050000 perm   2296 sec   (893 perm/sec)   p_kst 5.902439e-05   p_cons 2.589824e-01   p_joint 1.751220e-04

Joint ci ratio: 2.062977e-01	ci left: 1.571704e-04	ci right 1.937735e-04	k: 360	n:2060000
Cons ci ratio: 4.619929e-03	ci left: 2.583805e-01	ci right 2.595774e-01	k: 533496	n:2060000
KS ci ratio: 3.548895e-01	ci left: 4.873935e-05	ci right 7.018385e-05	k: 121	n:2060000
LPA   2060000 perm   2316 sec   (890 perm/sec)   p_kst 5.873786e-05   p_cons 2.589786e-01   p_joint 1.747573e-04

Joint ci ratio: 2.054457e-01	ci left: 1.577857e-04	ci right 1.943613e-04	k: 363	n:2070000
Cons ci ratio: 4.608604e-03	ci left: 2.583946e-01	ci right 2.595887e-01	k: 536112	n:2070000
KS ci ratio: 3.534439e-01	ci left: 4.894401e-05	ci right 7.037069e-05	k: 122	n:2070000
LPA   2070000 perm   2334 sec   (887 perm/sec)   p_kst 5.893720e-05   p_cons 2.589913e-01   p_joint 1.753623e-04

Joint ci ratio: 2.051641e-01	ci left: 1.574832e-04	ci right 1.939323e-04	k: 364	n:2080000
Cons ci ratio: 4.597661e-03	ci left: 2.583836e-01	ci right 2.595748e-01	k: 538676	n:2080000
KS ci ratio: 3.520158e-01	ci left: 4.914688e-05	ci right 7.055557e-05	k: 123	n:2080000
LPA   2080000 perm   2354 sec   (884 perm/sec)   p_kst 5.913462e-05   p_cons 2.589788e-01   p_joint 1.750000e-04

Joint ci ratio: 2.046043e-01	ci left: 1.576375e-04	ci right 1.940104e-04	k: 366	n:2090000
Cons ci ratio: 4.586539e-03	ci left: 2.583942e-01	ci right 2.595825e-01	k: 541285	n:2090000
KS ci ratio: 3.520159e-01	ci left: 4.891173e-05	ci right 7.021798e-05	k: 123	n:2090000
LPA   2090000 perm   2374 sec   (880 perm/sec)   p_kst 5.885167e-05   p_cons 2.589880e-01   p_joint 1.751196e-04

Joint ci ratio: 2.043262e-01	ci left: 1.573387e-04	ci right 1.935871e-04	k: 367	n:2100000
Cons ci ratio: 4.575520e-03	ci left: 2.584028e-01	ci right 2.595883e-01	k: 543890	n:2100000
KS ci ratio: 3.506049e-01	ci left: 4.911299e-05	ci right 7.040165e-05	k: 124	n:2100000
LPA   2100000 perm   2394 sec   (877 perm/sec)   p_kst 5.904762e-05   p_cons 2.589952e-01   p_joint 1.747619e-04

Joint ci ratio: 2.051644e-01	ci left: 1.552441e-04	ci right 1.911750e-04	k: 364	n:2110000
Cons ci ratio: 4.564411e-03	ci left: 2.584256e-01	ci right 2.596083e-01	k: 546525	n:2110000
KS ci ratio: 3.492108e-01	ci left: 4.931251e-05	ci right 7.058342e-05	k: 125	n:2110000
LPA   2110000 perm   2414 sec   (874 perm/sec)   p_kst 5.924171e-05   p_cons 2.590166e-01   p_joint 1.725118e-04

Joint ci ratio: 2.057290e-01	ci left: 1.536169e-04	ci right 1.892814e-04	k: 362	n:2120000
Cons ci ratio: 4.554003e-03	ci left: 2.583958e-01	ci right 2.595756e-01	k: 549049	n:2120000
KS ci ratio: 3.492109e-01	ci left: 4.907990e-05	ci right 7.025048e-05	k: 125	n:2120000
LPA   2120000 perm   2433 sec   (871 perm/sec)   p_kst 5.896226e-05   p_cons 2.589854e-01   p_joint 1.707547e-04

Joint ci ratio: 2.046047e-01	ci left: 1.546772e-04	ci right 1.903670e-04	k: 366	n:2130000
Cons ci ratio: 4.543055e-03	ci left: 2.584179e-01	ci right 2.595950e-01	k: 551683	n:2130000
KS ci ratio: 3.464718e-01	ci left: 4.970642e-05	ci right 7.094134e-05	k: 127	n:2130000
LPA   2130000 perm   2453 sec   (868 perm/sec)   p_kst 5.962441e-05   p_cons 2.590061e-01   p_joint 1.718310e-04

Joint ci ratio: 4.109188e-01	ci left: 3.381818e-05	ci right 5.169381e-05	k: 90	n:2140000
Cons ci ratio: 4.532434e-03	ci left: 2.584187e-01	ci right 2.595931e-01	k: 554272	n:2140000
KS ci ratio: 3.492110e-01	ci left: 4.862121e-05	ci right 6.959394e-05	k: 125	n:2140000
LPA   2140000 perm   2473 sec   (865 perm/sec)   p_kst 5.841121e-05   p_cons 2.590056e-01   p_joint 4.205607e-05

Joint ci ratio: 4.109189e-01	ci left: 3.366089e-05	ci right 5.145337e-05	k: 90	n:2150000
Cons ci ratio: 4.521580e-03	ci left: 2.584456e-01	ci right 2.596173e-01	k: 556917	n:2150000
KS ci ratio: 3.478334e-01	ci left: 4.881947e-05	ci right 6.977591e-05	k: 126	n:2150000
LPA   2150000 perm   2493 sec   (863 perm/sec)   p_kst 5.860465e-05   p_cons 2.590312e-01   p_joint 4.186047e-05

Joint ci ratio: 4.109189e-01	ci left: 3.350505e-05	ci right 5.121516e-05	k: 90	n:2160000
Cons ci ratio: 4.511038e-03	ci left: 2.584524e-01	ci right 2.596214e-01	k: 559519	n:2160000
KS ci ratio: 3.464720e-01	ci left: 4.901605e-05	ci right 6.995605e-05	k: 127	n:2160000
LPA   2160000 perm   2512 sec   (860 perm/sec)   p_kst 5.879630e-05   p_cons 2.590366e-01   p_joint 4.166667e-05

Joint ci ratio: 4.086795e-01	ci left: 3.376397e-05	ci right 5.148724e-05	k: 91	n:2170000
Cons ci ratio: 4.500434e-03	ci left: 2.584706e-01	ci right 2.596369e-01	k: 562146	n:2170000
KS ci ratio: 3.464720e-01	ci left: 4.879017e-05	ci right 6.963367e-05	k: 127	n:2170000
LPA   2170000 perm   2532 sec   (857 perm/sec)   p_kst 5.852535e-05   p_cons 2.590535e-01   p_joint 4.193548e-05

Joint ci ratio: 4.064763e-01	ci left: 3.402077e-05	ci right 5.175656e-05	k: 92	n:2180000
Cons ci ratio: 4.489797e-03	ci left: 2.584979e-01	ci right 2.596615e-01	k: 564793	n:2180000
KS ci ratio: 3.464721e-01	ci left: 4.856636e-05	ci right 6.931425e-05	k: 127	n:2180000
LPA   2180000 perm   2553 sec   (854 perm/sec)   p_kst 5.825688e-05   p_cons 2.590794e-01   p_joint 4.220183e-05

Joint ci ratio: 4.043084e-01	ci left: 3.427548e-05	ci right 5.202317e-05	k: 93	n:2190000
Cons ci ratio: 4.479257e-03	ci left: 2.585230e-01	ci right 2.596840e-01	k: 567436	n:2190000
KS ci ratio: 3.451265e-01	ci left: 4.876156e-05	ci right 6.949387e-05	k: 128	n:2190000
LPA   2190000 perm   2573 sec   (851 perm/sec)   p_kst 5.844749e-05   p_cons 2.591032e-01   p_joint 4.246575e-05

Joint ci ratio: 4.043084e-01	ci left: 3.411968e-05	ci right 5.178670e-05	k: 93	n:2200000
Cons ci ratio: 4.469065e-03	ci left: 2.585243e-01	ci right 2.596827e-01	k: 570027	n:2200000
KS ci ratio: 3.451266e-01	ci left: 4.853992e-05	ci right 6.917799e-05	k: 128	n:2200000
LPA   2200000 perm   2593 sec   (848 perm/sec)   p_kst 5.818182e-05   p_cons 2.591032e-01   p_joint 4.227273e-05

Joint ci ratio: 4.043084e-01	ci left: 3.396529e-05	ci right 5.155237e-05	k: 93	n:2210000
Cons ci ratio: 4.458691e-03	ci left: 2.585473e-01	ci right 2.597031e-01	k: 572666	n:2210000
KS ci ratio: 3.451266e-01	ci left: 4.832028e-05	ci right 6.886497e-05	k: 128	n:2210000
LPA   2210000 perm   2614 sec   (845 perm/sec)   p_kst 5.791855e-05   p_cons 2.591249e-01   p_joint 4.208145e-05

Joint ci ratio: 4.064765e-01	ci left: 3.340778e-05	ci right 5.082401e-05	k: 92	n:2220000
Cons ci ratio: 4.448826e-03	ci left: 2.585323e-01	ci right 2.596855e-01	k: 575221	n:2220000
KS ci ratio: 3.437966e-01	ci left: 4.851411e-05	ci right 6.904404e-05	k: 129	n:2220000
LPA   2220000 perm   2635 sec   (843 perm/sec)   p_kst 5.810811e-05   p_cons 2.591086e-01   p_joint 4.144144e-05

Joint ci ratio: 4.064765e-01	ci left: 3.325797e-05	ci right 5.059610e-05	k: 92	n:2230000
Cons ci ratio: 4.438473e-03	ci left: 2.585654e-01	ci right 2.597160e-01	k: 577883	n:2230000
KS ci ratio: 3.437966e-01	ci left: 4.829656e-05	ci right 6.873442e-05	k: 129	n:2230000
LPA   2230000 perm   2656 sec   (840 perm/sec)   p_kst 5.784753e-05   p_cons 2.591404e-01   p_joint 4.125561e-05

Joint ci ratio: 4.064765e-01	ci left: 3.310949e-05	ci right 5.037023e-05	k: 92	n:2240000
Cons ci ratio: 4.428247e-03	ci left: 2.585932e-01	ci right 2.597413e-01	k: 580534	n:2240000
KS ci ratio: 3.424819e-01	ci left: 4.848891e-05	ci right 6.891232e-05	k: 130	n:2240000
LPA   2240000 perm   2677 sec   (837 perm/sec)   p_kst 5.803571e-05   p_cons 2.591670e-01   p_joint 4.107143e-05

Joint ci ratio: 4.064766e-01	ci left: 3.296234e-05	ci right 5.014636e-05	k: 92	n:2250000
Cons ci ratio: 4.418578e-03	ci left: 2.585787e-01	ci right 2.597242e-01	k: 583090	n:2250000
KS ci ratio: 3.424819e-01	ci left: 4.827340e-05	ci right 6.860605e-05	k: 130	n:2250000
LPA   2250000 perm   2698 sec   (834 perm/sec)   p_kst 5.777778e-05   p_cons 2.591511e-01   p_joint 4.088889e-05

Joint ci ratio: 4.043086e-01	ci left: 3.321384e-05	ci right 5.041184e-05	k: 93	n:2260000
Cons ci ratio: 4.408962e-03	ci left: 2.585651e-01	ci right 2.597081e-01	k: 585648	n:2260000
KS ci ratio: 3.411822e-01	ci left: 4.846430e-05	ci right 6.878280e-05	k: 131	n:2260000
LPA   2260000 perm   2719 sec   (831 perm/sec)   p_kst 5.796460e-05   p_cons 2.591363e-01   p_joint 4.115044e-05

Joint ci ratio: 4.043087e-01	ci left: 3.306753e-05	ci right 5.018976e-05	k: 93	n:2270000
Cons ci ratio: 4.398984e-03	ci left: 2.585887e-01	ci right 2.597291e-01	k: 588290	n:2270000
KS ci ratio: 3.411822e-01	ci left: 4.825080e-05	ci right 6.847979e-05	k: 131	n:2270000
LPA   2270000 perm   2740 sec   (828 perm/sec)   p_kst 5.770925e-05   p_cons 2.591586e-01   p_joint 4.096916e-05

Joint ci ratio: 4.043087e-01	ci left: 3.292249e-05	ci right 4.996963e-05	k: 93	n:2280000
Cons ci ratio: 4.389255e-03	ci left: 2.585962e-01	ci right 2.597342e-01	k: 590896	n:2280000
KS ci ratio: 3.411823e-01	ci left: 4.803917e-05	ci right 6.817944e-05	k: 131	n:2280000
LPA   2280000 perm   2761 sec   (826 perm/sec)   p_kst 5.745614e-05   p_cons 2.591649e-01   p_joint 4.078947e-05

Joint ci ratio: 4.043087e-01	ci left: 3.277873e-05	ci right 4.975142e-05	k: 93	n:2290000
Cons ci ratio: 4.379863e-03	ci left: 2.585797e-01	ci right 2.597152e-01	k: 593447	n:2290000
KS ci ratio: 3.411823e-01	ci left: 4.782939e-05	ci right 6.788172e-05	k: 131	n:2290000
LPA   2290000 perm   2782 sec   (823 perm/sec)   p_kst 5.720524e-05   p_cons 2.591472e-01   p_joint 4.061135e-05

Joint ci ratio: 4.043088e-01	ci left: 3.263621e-05	ci right 4.953512e-05	k: 93	n:2300000
Cons ci ratio: 4.370413e-03	ci left: 2.585738e-01	ci right 2.597068e-01	k: 596022	n:2300000
KS ci ratio: 3.411823e-01	ci left: 4.762144e-05	ci right 6.758658e-05	k: 131	n:2300000
LPA   2300000 perm   2804 sec   (820 perm/sec)   p_kst 5.695652e-05   p_cons 2.591400e-01   p_joint 4.043478e-05

Joint ci ratio: 3.919914e-01	ci left: 3.483230e-05	ci right 5.217679e-05	k: 99	n:2310000
Cons ci ratio: 4.227941e-03	ci left: 2.706358e-01	ci right 2.717829e-01	k: 626493	n:2310000
KS ci ratio: 3.398972e-01	ci left: 4.781117e-05	ci right 6.776378e-05	k: 132	n:2310000
LPA   2310000 perm   2825 sec   (818 perm/sec)   p_kst 5.714286e-05   p_cons 2.712091e-01   p_joint 4.285714e-05

Joint ci ratio: 3.919915e-01	ci left: 3.468216e-05	ci right 5.195189e-05	k: 99	n:2320000
Cons ci ratio: 4.218875e-03	ci left: 2.706319e-01	ci right 2.717765e-01	k: 629193	n:2320000
KS ci ratio: 3.398973e-01	ci left: 4.760509e-05	ci right 6.747169e-05	k: 132	n:2320000
LPA   2320000 perm   2847 sec   (815 perm/sec)   p_kst 5.689655e-05   p_cons 2.712039e-01   p_joint 4.267241e-05

Joint ci ratio: 3.919915e-01	ci left: 3.453331e-05	ci right 5.172892e-05	k: 99	n:2330000
Cons ci ratio: 4.209446e-03	ci left: 2.706674e-01	ci right 2.718096e-01	k: 631985	n:2330000
KS ci ratio: 3.398973e-01	ci left: 4.740077e-05	ci right 6.718212e-05	k: 132	n:2330000
LPA   2330000 perm   2869 sec   (812 perm/sec)   p_kst 5.665236e-05   p_cons 2.712382e-01   p_joint 4.248927e-05

Joint ci ratio: 3.900461e-01	ci left: 3.477107e-05	ci right 5.197702e-05	k: 100	n:2340000
Cons ci ratio: 4.200222e-03	ci left: 2.706894e-01	ci right 2.718291e-01	k: 634746	n:2340000
KS ci ratio: 3.398974e-01	ci left: 4.719820e-05	ci right 6.689502e-05	k: 132	n:2340000
LPA   2340000 perm   2890 sec   (810 perm/sec)   p_kst 5.641026e-05   p_cons 2.712590e-01   p_joint 4.273504e-05

Joint ci ratio: 3.900461e-01	ci left: 3.462310e-05	ci right 5.175584e-05	k: 100	n:2350000
Cons ci ratio: 4.191540e-03	ci left: 2.706657e-01	ci right 2.718030e-01	k: 637400	n:2350000
KS ci ratio: 3.398974e-01	ci left: 4.699736e-05	ci right 6.661036e-05	k: 132	n:2350000
LPA   2350000 perm   2912 sec   (807 perm/sec)   p_kst 5.617021e-05   p_cons 2.712340e-01   p_joint 4.255319e-05

Joint ci ratio: 3.900461e-01	ci left: 3.447640e-05	ci right 5.153654e-05	k: 100	n:2360000
Cons ci ratio: 4.182454e-03	ci left: 2.706854e-01	ci right 2.718203e-01	k: 640156	n:2360000
KS ci ratio: 3.386267e-01	ci left: 4.718585e-05	ci right 6.678780e-05	k: 133	n:2360000
LPA   2360000 perm   2934 sec   (804 perm/sec)   p_kst 5.635593e-05   p_cons 2.712525e-01   p_joint 4.237288e-05

Joint ci ratio: 3.900462e-01	ci left: 3.433093e-05	ci right 5.131909e-05	k: 100	n:2370000
Cons ci ratio: 4.173846e-03	ci left: 2.706653e-01	ci right 2.717977e-01	k: 642818	n:2370000
KS ci ratio: 3.386268e-01	ci left: 4.698675e-05	ci right 6.650600e-05	k: 133	n:2370000
LPA   2370000 perm   2956 sec   (802 perm/sec)   p_kst 5.611814e-05   p_cons 2.712312e-01   p_joint 4.219409e-05

Joint ci ratio: 3.881294e-01	ci left: 3.456574e-05	ci right 5.156454e-05	k: 101	n:2380000
Cons ci ratio: 4.165172e-03	ci left: 2.706567e-01	ci right 2.717867e-01	k: 645507	n:2380000
KS ci ratio: 3.386268e-01	ci left: 4.678933e-05	ci right 6.622656e-05	k: 133	n:2380000
LPA   2380000 perm   2978 sec   (799 perm/sec)   p_kst 5.588235e-05   p_cons 2.712214e-01   p_joint 4.243697e-05

Joint ci ratio: 3.881295e-01	ci left: 3.442111e-05	ci right 5.134879e-05	k: 101	n:2390000
Cons ci ratio: 4.156648e-03	ci left: 2.706389e-01	ci right 2.717666e-01	k: 648174	n:2390000
KS ci ratio: 3.386269e-01	ci left: 4.659356e-05	ci right 6.594947e-05	k: 133	n:2390000
LPA   2390000 perm   3000 sec   (797 perm/sec)   p_kst 5.564854e-05   p_cons 2.712025e-01   p_joint 4.225941e-05

Joint ci ratio: 3.881295e-01	ci left: 3.427769e-05	ci right 5.113483e-05	k: 101	n:2400000
Cons ci ratio: 4.148123e-03	ci left: 2.706264e-01	ci right 2.717517e-01	k: 650853	n:2400000
KS ci ratio: 3.373703e-01	ci left: 4.678072e-05	ci right 6.612657e-05	k: 134	n:2400000
LPA   2400000 perm   3022 sec   (794 perm/sec)   p_kst 5.583333e-05   p_cons 2.711887e-01   p_joint 4.208333e-05

Joint ci ratio: 3.881295e-01	ci left: 3.413546e-05	ci right 5.092266e-05	k: 101	n:2410000
Cons ci ratio: 4.139460e-03	ci left: 2.706321e-01	ci right 2.717551e-01	k: 653576	n:2410000
KS ci ratio: 3.373704e-01	ci left: 4.658661e-05	ci right 6.585219e-05	k: 134	n:2410000
LPA   2410000 perm   3044 sec   (792 perm/sec)   p_kst 5.560166e-05   p_cons 2.711934e-01   p_joint 4.190871e-05

Joint ci ratio: 3.881296e-01	ci left: 3.399441e-05	ci right 5.071223e-05	k: 101	n:2420000
Cons ci ratio: 4.131244e-03	ci left: 2.706003e-01	ci right 2.717209e-01	k: 656208	n:2420000
KS ci ratio: 3.373704e-01	ci left: 4.639410e-05	ci right 6.558008e-05	k: 134	n:2420000
LPA   2420000 perm   3067 sec   (789 perm/sec)   p_kst 5.537190e-05   p_cons 2.711603e-01   p_joint 4.173554e-05

Joint ci ratio: 3.881296e-01	ci left: 3.385451e-05	ci right 5.050354e-05	k: 101	n:2430000
Cons ci ratio: 4.122617e-03	ci left: 2.706127e-01	ci right 2.717310e-01	k: 658947	n:2430000
KS ci ratio: 3.373704e-01	ci left: 4.620318e-05	ci right 6.531020e-05	k: 134	n:2430000
LPA   2430000 perm   3089 sec   (787 perm/sec)   p_kst 5.514403e-05   p_cons 2.711716e-01   p_joint 4.156379e-05

Joint ci ratio: 3.881296e-01	ci left: 3.371576e-05	ci right 5.029656e-05	k: 101	n:2440000
Cons ci ratio: 4.114462e-03	ci left: 2.705849e-01	ci right 2.717009e-01	k: 661588	n:2440000
KS ci ratio: 3.361278e-01	ci left: 4.638901e-05	ci right 6.548690e-05	k: 135	n:2440000
LPA   2440000 perm   3111 sec   (784 perm/sec)   p_kst 5.532787e-05   p_cons 2.711426e-01   p_joint 4.139344e-05

Joint ci ratio: 3.881297e-01	ci left: 3.357815e-05	ci right 5.009127e-05	k: 101	n:2450000
Cons ci ratio: 4.105859e-03	ci left: 2.706050e-01	ci right 2.717188e-01	k: 664346	n:2450000
KS ci ratio: 3.348988e-01	ci left: 4.657345e-05	ci right 6.566202e-05	k: 136	n:2450000
LPA   2450000 perm   3134 sec   (782 perm/sec)   p_kst 5.551020e-05   p_cons 2.711616e-01   p_joint 4.122449e-05

Joint ci ratio: 3.881297e-01	ci left: 3.344165e-05	ci right 4.988765e-05	k: 101	n:2460000
Cons ci ratio: 4.097420e-03	ci left: 2.706144e-01	ci right 2.717259e-01	k: 667078	n:2460000
KS ci ratio: 3.324806e-01	ci left: 4.712903e-05	ci right 6.627598e-05	k: 138	n:2460000
LPA   2460000 perm   3156 sec   (779 perm/sec)   p_kst 5.609756e-05   p_cons 2.711699e-01   p_joint 4.105691e-05

Joint ci ratio: 3.881297e-01	ci left: 3.330626e-05	ci right 4.968567e-05	k: 101	n:2470000
Cons ci ratio: 4.089191e-03	ci left: 2.706084e-01	ci right 2.717176e-01	k: 669772	n:2470000
KS ci ratio: 3.312910e-01	ci left: 4.730935e-05	ci right 6.644612e-05	k: 139	n:2470000
LPA   2470000 perm   3179 sec   (777 perm/sec)   p_kst 5.627530e-05   p_cons 2.711628e-01   p_joint 4.089069e-05

Joint ci ratio: 3.881298e-01	ci left: 3.317196e-05	ci right 4.948533e-05	k: 101	n:2480000
Cons ci ratio: 4.080982e-03	ci left: 2.706052e-01	ci right 2.717122e-01	k: 672473	n:2480000
KS ci ratio: 3.312910e-01	ci left: 4.711858e-05	ci right 6.617820e-05	k: 139	n:2480000
LPA   2480000 perm   3202 sec   (775 perm/sec)   p_kst 5.604839e-05   p_cons 2.711585e-01   p_joint 4.072581e-05

Joint ci ratio: 3.881298e-01	ci left: 3.303874e-05	ci right 4.928659e-05	k: 101	n:2490000
Cons ci ratio: 4.072873e-03	ci left: 2.705973e-01	ci right 2.717020e-01	k: 675162	n:2490000
KS ci ratio: 3.301141e-01	ci left: 4.729762e-05	ci right 6.634725e-05	k: 140	n:2490000
LPA   2490000 perm   3224 sec   (772 perm/sec)   p_kst 5.622490e-05   p_cons 2.711494e-01   p_joint 4.056225e-05

Joint ci ratio: 3.881298e-01	ci left: 3.290658e-05	ci right 4.908945e-05	k: 101	n:2500000
Cons ci ratio: 4.064610e-03	ci left: 2.706090e-01	ci right 2.717115e-01	k: 677900	n:2500000
KS ci ratio: 3.301142e-01	ci left: 4.710843e-05	ci right 6.608186e-05	k: 140	n:2500000
LPA   2500000 perm   3247 sec   (770 perm/sec)   p_kst 5.600000e-05   p_cons 2.711600e-01   p_joint 4.040000e-05

Joint ci ratio: 3.862411e-01	ci left: 3.313510e-05	ci right 4.933088e-05	k: 102	n:2510000
Cons ci ratio: 4.056516e-03	ci left: 2.706091e-01	ci right 2.717094e-01	k: 680609	n:2510000
KS ci ratio: 3.301142e-01	ci left: 4.692074e-05	ci right 6.581859e-05	k: 140	n:2510000
LPA   2510000 perm   3270 sec   (768 perm/sec)   p_kst 5.577689e-05   p_cons 2.711590e-01   p_joint 4.063745e-05

Joint ci ratio: 3.843796e-01	ci left: 3.336200e-05	ci right 4.957020e-05	k: 103	n:2520000
Cons ci ratio: 4.048527e-03	ci left: 2.706036e-01	ci right 2.717017e-01	k: 683304	n:2520000
KS ci ratio: 3.277975e-01	ci left: 4.746267e-05	ci right 6.641636e-05	k: 142	n:2520000
LPA   2520000 perm   3293 sec   (765 perm/sec)   p_kst 5.634921e-05   p_cons 2.711524e-01   p_joint 4.087302e-05

Joint ci ratio: 3.843796e-01	ci left: 3.323013e-05	ci right 4.937427e-05	k: 103	n:2530000
Cons ci ratio: 4.040471e-03	ci left: 2.706092e-01	ci right 2.717052e-01	k: 686027	n:2530000
KS ci ratio: 3.255289e-01	ci left: 4.800077e-05	ci right 6.700896e-05	k: 144	n:2530000
LPA   2530000 perm   3317 sec   (763 perm/sec)   p_kst 5.691700e-05   p_cons 2.711569e-01   p_joint 4.071146e-05

Joint ci ratio: 3.807360e-01	ci left: 3.381099e-05	ci right 5.004266e-05	k: 105	n:2540000
Cons ci ratio: 4.032677e-03	ci left: 2.705939e-01	ci right 2.716877e-01	k: 688697	n:2540000
KS ci ratio: 3.244121e-01	ci left: 4.817338e-05	ci right 6.717085e-05	k: 145	n:2540000
LPA   2540000 perm   3340 sec   (760 perm/sec)   p_kst 5.708661e-05   p_cons 2.711406e-01   p_joint 4.133858e-05

Joint ci ratio: 2.215579e-01	ci left: 1.091524e-04	ci right 1.367098e-04	k: 312	n:2550000
Cons ci ratio: 4.024676e-03	ci left: 2.706034e-01	ci right 2.716951e-01	k: 691430	n:2550000
KS ci ratio: 3.233068e-01	ci left: 4.834474e-05	ci right 6.733136e-05	k: 146	n:2550000
LPA   2550000 perm   3364 sec   (758 perm/sec)   p_kst 5.725490e-05   p_cons 2.711490e-01   p_joint 1.223529e-04

Joint ci ratio: 2.212048e-01	ci left: 1.090950e-04	ci right 1.365880e-04	k: 313	n:2560000
Cons ci ratio: 4.016825e-03	ci left: 2.706028e-01	ci right 2.716923e-01	k: 694137	n:2560000
KS ci ratio: 3.233068e-01	ci left: 4.815589e-05	ci right 6.706835e-05	k: 146	n:2560000
LPA   2560000 perm   3388 sec   (756 perm/sec)   p_kst 5.703125e-05   p_cons 2.711473e-01   p_joint 1.222656e-04

Joint ci ratio: 2.205036e-01	ci left: 1.094056e-04	ci right 1.368778e-04	k: 315	n:2570000
Cons ci ratio: 4.008823e-03	ci left: 2.706215e-01	ci right 2.717089e-01	k: 696894	n:2570000
KS ci ratio: 3.211295e-01	ci left: 4.868379e-05	ci right 6.764831e-05	k: 148	n:2570000
LPA   2570000 perm   3412 sec   (753 perm/sec)   p_kst 5.758755e-05   p_cons 2.711650e-01   p_joint 1.225681e-04

Joint ci ratio: 2.198091e-01	ci left: 1.097140e-04	ci right 1.371651e-04	k: 317	n:2580000
Cons ci ratio: 4.000786e-03	ci left: 2.706483e-01	ci right 2.717336e-01	k: 699672	n:2580000
KS ci ratio: 3.200573e-01	ci left: 4.885151e-05	ci right 6.780479e-05	k: 149	n:2580000
LPA   2580000 perm   3436 sec   (751 perm/sec)   p_kst 5.775194e-05   p_cons 2.711907e-01   p_joint 1.228682e-04

Joint ci ratio: 2.194643e-01	ci left: 1.096553e-04	ci right 1.370428e-04	k: 318	n:2590000
Cons ci ratio: 3.993215e-03	ci left: 2.706335e-01	ci right 2.717168e-01	k: 702343	n:2590000
KS ci ratio: 3.189957e-01	ci left: 4.901803e-05	ci right 6.795995e-05	k: 150	n:2590000
LPA   2590000 perm   3459 sec   (749 perm/sec)   p_kst 5.791506e-05   p_cons 2.711749e-01   p_joint 1.227799e-04

Joint ci ratio: 2.191211e-01	ci left: 1.095970e-04	ci right 1.369214e-04	k: 319	n:2600000
Cons ci ratio: 3.985368e-03	ci left: 2.706504e-01	ci right 2.717316e-01	k: 705096	n:2600000
KS ci ratio: 3.179446e-01	ci left: 4.918338e-05	ci right 6.811382e-05	k: 151	n:2600000
LPA   2600000 perm   3483 sec   (746 perm/sec)   p_kst 5.807692e-05   p_cons 2.711908e-01   p_joint 1.226923e-04

Joint ci ratio: 2.187796e-01	ci left: 1.095393e-04	ci right 1.368009e-04	k: 320	n:2610000
Cons ci ratio: 3.977810e-03	ci left: 2.706431e-01	ci right 2.717222e-01	k: 707786	n:2610000
KS ci ratio: 3.179447e-01	ci left: 4.899493e-05	ci right 6.785285e-05	k: 151	n:2610000
LPA   2610000 perm   3508 sec   (744 perm/sec)   p_kst 5.785441e-05   p_cons 2.711824e-01   p_joint 1.226054e-04

Joint ci ratio: 2.184396e-01	ci left: 1.094819e-04	ci right 1.366813e-04	k: 321	n:2620000
Cons ci ratio: 3.970211e-03	ci left: 2.706442e-01	ci right 2.717212e-01	k: 710498	n:2620000
KS ci ratio: 3.169039e-01	ci left: 4.915921e-05	ci right 6.800586e-05	k: 152	n:2620000
LPA   2620000 perm   3532 sec   (742 perm/sec)   p_kst 5.801527e-05   p_cons 2.711824e-01   p_joint 1.225191e-04

Joint ci ratio: 2.177643e-01	ci left: 1.097846e-04	ci right 1.369636e-04	k: 323	n:2630000
Cons ci ratio: 3.962869e-03	ci left: 2.706240e-01	ci right 2.716989e-01	k: 713154	n:2630000
KS ci ratio: 3.169039e-01	ci left: 4.897229e-05	ci right 6.774728e-05	k: 152	n:2630000
LPA   2630000 perm   3556 sec   (740 perm/sec)   p_kst 5.779468e-05   p_cons 2.711612e-01   p_joint 1.228137e-04

Joint ci ratio: 2.161031e-01	ci left: 1.111598e-04	ci right 1.384414e-04	k: 328	n:2640000
Cons ci ratio: 3.955537e-03	ci left: 2.706070e-01	ci right 2.716799e-01	k: 715818	n:2640000
KS ci ratio: 3.148527e-01	ci left: 4.948431e-05	ci right 6.830810e-05	k: 154	n:2640000
LPA   2640000 perm   3580 sec   (737 perm/sec)   p_kst 5.833333e-05   p_cons 2.711432e-01   p_joint 1.242424e-04

Joint ci ratio: 2.154492e-01	ci left: 1.114543e-04	ci right 1.387145e-04	k: 330	n:2650000
Cons ci ratio: 3.948162e-03	ci left: 2.705984e-01	ci right 2.716693e-01	k: 718504	n:2650000
KS ci ratio: 3.138419e-01	ci left: 4.964517e-05	ci right 6.845736e-05	k: 155	n:2650000
LPA   2650000 perm   3604 sec   (735 perm/sec)   p_kst 5.849057e-05   p_cons 2.711336e-01   p_joint 1.245283e-04

Joint ci ratio: 2.151245e-01	ci left: 1.113909e-04	ci right 1.385892e-04	k: 331	n:2660000
Cons ci ratio: 3.940514e-03	ci left: 2.706215e-01	ci right 2.716903e-01	k: 721274	n:2660000
KS ci ratio: 3.138419e-01	ci left: 4.945854e-05	ci right 6.820000e-05	k: 155	n:2660000
LPA   2660000 perm   3628 sec   (733 perm/sec)   p_kst 5.827068e-05   p_cons 2.711556e-01   p_joint 1.244361e-04

Joint ci ratio: 2.144794e-01	ci left: 1.116825e-04	ci right 1.388594e-04	k: 333	n:2670000
Cons ci ratio: 3.932947e-03	ci left: 2.706406e-01	ci right 2.717075e-01	k: 724034	n:2670000
KS ci ratio: 3.138420e-01	ci left: 4.927330e-05	ci right 6.794457e-05	k: 155	n:2670000
LPA   2670000 perm   3653 sec   (731 perm/sec)   p_kst 5.805243e-05   p_cons 2.711738e-01   p_joint 1.247191e-04

Joint ci ratio: 2.135225e-01	ci left: 1.123252e-04	ci right 1.395206e-04	k: 336	n:2680000
Cons ci ratio: 3.925628e-03	ci left: 2.706391e-01	ci right 2.717040e-01	k: 726739	n:2680000
KS ci ratio: 3.118492e-01	ci left: 4.977713e-05	ci right 6.849571e-05	k: 157	n:2680000
LPA   2680000 perm   3677 sec   (729 perm/sec)   p_kst 5.858209e-05   p_cons 2.711713e-01   p_joint 1.253731e-04

Joint ci ratio: 2.132065e-01	ci left: 1.122595e-04	ci right 1.393935e-04	k: 337	n:2690000
Cons ci ratio: 3.918419e-03	ci left: 2.706305e-01	ci right 2.716934e-01	k: 729425	n:2690000
KS ci ratio: 3.108670e-01	ci left: 4.993479e-05	ci right 6.864178e-05	k: 158	n:2690000
LPA   2690000 perm   3702 sec   (727 perm/sec)   p_kst 5.873606e-05   p_cons 2.711617e-01   p_joint 1.252788e-04

Joint ci ratio: 2.132065e-01	ci left: 1.118437e-04	ci right 1.388772e-04	k: 337	n:2700000
Cons ci ratio: 3.911235e-03	ci left: 2.706235e-01	ci right 2.716844e-01	k: 732115	n:2700000
KS ci ratio: 3.108670e-01	ci left: 4.974985e-05	ci right 6.838755e-05	k: 158	n:2700000
LPA   2700000 perm   3725 sec   (725 perm/sec)   p_kst 5.851852e-05   p_cons 2.711537e-01   p_joint 1.248148e-04

Joint ci ratio: 2.125785e-01	ci left: 1.121297e-04	ci right 1.391420e-04	k: 339	n:2710000
Cons ci ratio: 3.904058e-03	ci left: 2.706199e-01	ci right 2.716788e-01	k: 734814	n:2710000
KS ci ratio: 3.108670e-01	ci left: 4.956627e-05	ci right 6.813520e-05	k: 158	n:2710000
LPA   2710000 perm   3750 sec   (723 perm/sec)   p_kst 5.830258e-05   p_cons 2.711491e-01   p_joint 1.250923e-04

Joint ci ratio: 2.119560e-01	ci left: 1.124136e-04	ci right 1.394048e-04	k: 341	n:2720000
Cons ci ratio: 3.896902e-03	ci left: 2.706181e-01	ci right 2.716751e-01	k: 737518	n:2720000
KS ci ratio: 3.108671e-01	ci left: 4.938404e-05	ci right 6.788471e-05	k: 158	n:2720000
LPA   2720000 perm   3774 sec   (721 perm/sec)   p_kst 5.808824e-05   p_cons 2.711463e-01   p_joint 1.253676e-04

Joint ci ratio: 2.116468e-01	ci left: 1.123487e-04	ci right 1.392799e-04	k: 342	n:2730000
Cons ci ratio: 3.889886e-03	ci left: 2.706061e-01	ci right 2.716611e-01	k: 740194	n:2730000
KS ci ratio: 3.098941e-01	ci left: 4.954092e-05	ci right 6.803078e-05	k: 159	n:2730000
LPA   2730000 perm   3798 sec   (719 perm/sec)   p_kst 5.824176e-05   p_cons 2.711333e-01   p_joint 1.252747e-04

Joint ci ratio: 2.113389e-01	ci left: 1.122844e-04	ci right 1.391558e-04	k: 343	n:2740000
Cons ci ratio: 3.882607e-03	ci left: 2.706248e-01	ci right 2.716779e-01	k: 742954	n:2740000
KS ci ratio: 3.079751e-01	ci left: 5.003346e-05	ci right 6.856883e-05	k: 161	n:2740000
LPA   2740000 perm   3823 sec   (717 perm/sec)   p_kst 5.875912e-05   p_cons 2.711511e-01   p_joint 1.251825e-04

Joint ci ratio: 2.104233e-01	ci left: 1.129093e-04	ci right 1.397982e-04	k: 346	n:2750000
Cons ci ratio: 3.875568e-03	ci left: 2.706230e-01	ci right 2.716742e-01	k: 745658	n:2750000
KS ci ratio: 3.051624e-01	ci left: 5.085853e-05	ci right 6.949404e-05	k: 164	n:2750000
LPA   2750000 perm   3847 sec   (715 perm/sec)   p_kst 5.963636e-05   p_cons 2.711484e-01   p_joint 1.258182e-04

Joint ci ratio: 2.101208e-01	ci left: 1.128435e-04	ci right 1.396731e-04	k: 347	n:2760000
Cons ci ratio: 3.868716e-03	ci left: 2.706060e-01	ci right 2.716553e-01	k: 748320	n:2760000
KS ci ratio: 3.042418e-01	ci left: 5.100888e-05	ci right 6.963219e-05	k: 165	n:2760000
LPA   2760000 perm   3872 sec   (713 perm/sec)   p_kst 5.978261e-05   p_cons 2.711304e-01   p_joint 1.257246e-04

Joint ci ratio: 2.098195e-01	ci left: 1.127781e-04	ci right 1.395488e-04	k: 348	n:2770000
Cons ci ratio: 3.861760e-03	ci left: 2.706036e-01	ci right 2.716510e-01	k: 751022	n:2770000
KS ci ratio: 3.033295e-01	ci left: 5.115823e-05	ci right 6.976925e-05	k: 166	n:2770000
LPA   2770000 perm   3897 sec   (711 perm/sec)   p_kst 5.992780e-05   p_cons 2.711271e-01   p_joint 1.256318e-04

Joint ci ratio: 2.095196e-01	ci left: 1.127133e-04	ci right 1.394254e-04	k: 349	n:2780000
Cons ci ratio: 3.855040e-03	ci left: 2.705807e-01	ci right 2.716262e-01	k: 753667	n:2780000
KS ci ratio: 3.033295e-01	ci left: 5.097421e-05	ci right 6.951828e-05	k: 166	n:2780000
LPA   2780000 perm   3922 sec   (709 perm/sec)   p_kst 5.971223e-05   p_cons 2.711032e-01   p_joint 1.255396e-04

Joint ci ratio: 2.095196e-01	ci left: 1.123093e-04	ci right 1.389257e-04	k: 349	n:2790000
Cons ci ratio: 3.848108e-03	ci left: 2.705835e-01	ci right 2.716270e-01	k: 756383	n:2790000
KS ci ratio: 3.033296e-01	ci left: 5.079150e-05	ci right 6.926911e-05	k: 166	n:2790000
LPA   2790000 perm   3947 sec   (707 perm/sec)   p_kst 5.949821e-05   p_cons 2.711050e-01   p_joint 1.250896e-04

Joint ci ratio: 2.086274e-01	ci left: 1.129235e-04	ci right 1.395570e-04	k: 352	n:2800000
Cons ci ratio: 3.841022e-03	ci left: 2.706058e-01	ci right 2.716475e-01	k: 759154	n:2800000
KS ci ratio: 3.033296e-01	ci left: 5.061010e-05	ci right 6.902172e-05	k: 166	n:2800000
LPA   2800000 perm   3973 sec   (705 perm/sec)   p_kst 5.928571e-05   p_cons 2.711264e-01   p_joint 1.257143e-04

Joint ci ratio: 2.080388e-01	ci left: 1.131963e-04	ci right 1.398091e-04	k: 354	n:2810000
Cons ci ratio: 3.834248e-03	ci left: 2.705999e-01	ci right 2.716397e-01	k: 761846	n:2810000
KS ci ratio: 3.033296e-01	ci left: 5.043000e-05	ci right 6.877610e-05	k: 166	n:2810000
LPA   2810000 perm   3998 sec   (703 perm/sec)   p_kst 5.907473e-05   p_cons 2.711196e-01   p_joint 1.259786e-04

Joint ci ratio: 2.089236e-01	ci left: 1.117866e-04	ci right 1.381941e-04	k: 351	n:2820000
Cons ci ratio: 3.827582e-03	ci left: 2.705865e-01	ci right 2.716246e-01	k: 764517	n:2820000
KS ci ratio: 3.033297e-01	ci left: 5.025117e-05	ci right 6.853221e-05	k: 166	n:2820000
LPA   2820000 perm   4023 sec   (701 perm/sec)   p_kst 5.886525e-05   p_cons 2.711053e-01   p_joint 1.244681e-04

Joint ci ratio: 2.089237e-01	ci left: 1.113916e-04	ci right 1.377058e-04	k: 351	n:2830000
Cons ci ratio: 3.821148e-03	ci left: 2.705528e-01	ci right 2.715890e-01	k: 767130	n:2830000
KS ci ratio: 3.006412e-01	ci left: 5.105337e-05	ci right 6.943019e-05	k: 169	n:2830000
LPA   2830000 perm   4048 sec   (699 perm/sec)   p_kst 5.971731e-05   p_cons 2.710707e-01   p_joint 1.240283e-04

Joint ci ratio: 2.089237e-01	ci left: 1.109993e-04	ci right 1.372209e-04	k: 351	n:2840000
Cons ci ratio: 3.814125e-03	ci left: 2.705838e-01	ci right 2.716181e-01	k: 769926	n:2840000
KS ci ratio: 2.997608e-01	ci left: 5.119920e-05	ci right 6.956427e-05	k: 170	n:2840000
LPA   2840000 perm   4073 sec   (697 perm/sec)   p_kst 5.985915e-05   p_cons 2.711007e-01   p_joint 1.235915e-04

Joint ci ratio: 2.089238e-01	ci left: 1.106099e-04	ci right 1.367394e-04	k: 351	n:2850000
Cons ci ratio: 3.807506e-03	ci left: 2.705766e-01	ci right 2.716091e-01	k: 772614	n:2850000
KS ci ratio: 2.997608e-01	ci left: 5.101955e-05	ci right 6.932018e-05	k: 170	n:2850000
LPA   2850000 perm   4100 sec   (695 perm/sec)   p_kst 5.964912e-05   p_cons 2.710926e-01   p_joint 1.231579e-04

Joint ci ratio: 2.089238e-01	ci left: 1.102231e-04	ci right 1.362613e-04	k: 351	n:2860000
Cons ci ratio: 3.800675e-03	ci left: 2.705950e-01	ci right 2.716257e-01	k: 775375	n:2860000
KS ci ratio: 2.997609e-01	ci left: 5.084116e-05	ci right 6.907780e-05	k: 170	n:2860000
LPA   2860000 perm   4125 sec   (693 perm/sec)   p_kst 5.944056e-05   p_cons 2.711101e-01   p_joint 1.227273e-04

Joint ci ratio: 2.083328e-01	ci left: 1.104995e-04	ci right 1.365197e-04	k: 353	n:2870000
Cons ci ratio: 3.793864e-03	ci left: 2.706150e-01	ci right 2.716440e-01	k: 778141	n:2870000
KS ci ratio: 2.988882e-01	ci left: 5.098628e-05	ci right 6.921163e-05	k: 171	n:2870000
LPA   2870000 perm   4151 sec   (691 perm/sec)   p_kst 5.958188e-05   p_cons 2.711293e-01   p_joint 1.229965e-04

Joint ci ratio: 2.089239e-01	ci left: 1.094577e-04	ci right 1.353151e-04	k: 351	n:2880000
Cons ci ratio: 3.787136e-03	ci left: 2.706300e-01	ci right 2.716572e-01	k: 780893	n:2880000
KS ci ratio: 2.988882e-01	ci left: 5.080925e-05	ci right 6.897132e-05	k: 171	n:2880000
LPA   2880000 perm   4177 sec   (690 perm/sec)   p_kst 5.937500e-05   p_cons 2.711434e-01   p_joint 1.218750e-04

Joint ci ratio: 2.083329e-01	ci left: 1.097348e-04	ci right 1.355750e-04	k: 353	n:2890000
Cons ci ratio: 3.780716e-03	ci left: 2.706166e-01	ci right 2.716420e-01	k: 783563	n:2890000
KS ci ratio: 2.980231e-01	ci left: 5.095355e-05	ci right 6.910451e-05	k: 172	n:2890000
LPA   2890000 perm   4202 sec   (688 perm/sec)   p_kst 5.951557e-05   p_cons 2.711291e-01   p_joint 1.221453e-04

Joint ci ratio: 2.074556e-01	ci left: 1.103371e-04	ci right 1.361957e-04	k: 356	n:2900000
Cons ci ratio: 3.774084e-03	ci left: 2.706288e-01	ci right 2.716524e-01	k: 786307	n:2900000
KS ci ratio: 2.971655e-01	ci left: 5.109694e-05	ci right 6.923672e-05	k: 173	n:2900000
LPA   2900000 perm   4228 sec   (686 perm/sec)   p_kst 5.965517e-05   p_cons 2.711403e-01   p_joint 1.227586e-04

Joint ci ratio: 2.071657e-01	ci left: 1.102837e-04	ci right 1.360892e-04	k: 357	n:2910000
Cons ci ratio: 3.767448e-03	ci left: 2.706450e-01	ci right 2.716668e-01	k: 789063	n:2910000
KS ci ratio: 2.971655e-01	ci left: 5.092135e-05	ci right 6.899879e-05	k: 173	n:2910000
LPA   2910000 perm   4254 sec   (684 perm/sec)   p_kst 5.945017e-05   p_cons 2.711557e-01   p_joint 1.226804e-04

Joint ci ratio: 2.068769e-01	ci left: 1.102307e-04	ci right 1.359833e-04	k: 358	n:2920000
Cons ci ratio: 3.761081e-03	ci left: 2.706364e-01	ci right 2.716565e-01	k: 791747	n:2920000
KS ci ratio: 2.971655e-01	ci left: 5.074696e-05	ci right 6.876249e-05	k: 173	n:2920000
LPA   2920000 perm   4281 sec   (682 perm/sec)   p_kst 5.924658e-05   p_cons 2.711462e-01   p_joint 1.226027e-04

Joint ci ratio: 2.068770e-01	ci left: 1.098545e-04	ci right 1.355192e-04	k: 358	n:2930000
Cons ci ratio: 3.754730e-03	ci left: 2.706296e-01	ci right 2.716480e-01	k: 794436	n:2930000
KS ci ratio: 2.971656e-01	ci left: 5.057376e-05	ci right 6.852781e-05	k: 173	n:2930000
LPA   2930000 perm   4307 sec   (680 perm/sec)   p_kst 5.904437e-05   p_cons 2.711386e-01   p_joint 1.221843e-04

Joint ci ratio: 2.083331e-01	ci left: 1.078686e-04	ci right 1.332693e-04	k: 353	n:2940000
Cons ci ratio: 3.748337e-03	ci left: 2.706307e-01	ci right 2.716473e-01	k: 797148	n:2940000
KS ci ratio: 2.971656e-01	ci left: 5.040174e-05	ci right 6.829472e-05	k: 173	n:2940000
LPA   2940000 perm   4333 sec   (679 perm/sec)   p_kst 5.884354e-05   p_cons 2.711388e-01   p_joint 1.200680e-04

Joint ci ratio: 2.080394e-01	ci left: 1.078242e-04	ci right 1.331742e-04	k: 354	n:2950000
Cons ci ratio: 3.742070e-03	ci left: 2.706219e-01	ci right 2.716368e-01	k: 799831	n:2950000
KS ci ratio: 2.963153e-01	ci left: 5.054464e-05	ci right 6.842736e-05	k: 174	n:2950000
LPA   2950000 perm   4359 sec   (677 perm/sec)   p_kst 5.898305e-05   p_cons 2.711292e-01   p_joint 1.200000e-04

Joint ci ratio: 2.074559e-01	ci left: 1.081005e-04	ci right 1.334350e-04	k: 356	n:2960000
Cons ci ratio: 3.735792e-03	ci left: 2.706176e-01	ci right 2.716308e-01	k: 802527	n:2960000
KS ci ratio: 2.954723e-01	ci left: 5.068664e-05	ci right 6.855903e-05	k: 175	n:2960000
LPA   2960000 perm   4386 sec   (675 perm/sec)   p_kst 5.912162e-05   p_cons 2.711240e-01   p_joint 1.202703e-04

Joint ci ratio: 2.068771e-01	ci left: 1.083750e-04	ci right 1.336940e-04	k: 358	n:2970000
Cons ci ratio: 3.729400e-03	ci left: 2.706288e-01	ci right 2.716403e-01	k: 805269	n:2970000
KS ci ratio: 2.946364e-01	ci left: 5.082777e-05	ci right 6.868974e-05	k: 176	n:2970000
LPA   2970000 perm   4413 sec   (673 perm/sec)   p_kst 5.925926e-05   p_cons 2.711343e-01   p_joint 1.205387e-04

Joint ci ratio: 2.068772e-01	ci left: 1.080113e-04	ci right 1.332454e-04	k: 358	n:2980000
Cons ci ratio: 3.723217e-03	ci left: 2.706212e-01	ci right 2.716310e-01	k: 807955	n:2980000
KS ci ratio: 2.946364e-01	ci left: 5.065720e-05	ci right 6.845924e-05	k: 176	n:2980000
LPA   2980000 perm   4439 sec   (671 perm/sec)   p_kst 5.906040e-05   p_cons 2.711258e-01   p_joint 1.201342e-04

Joint ci ratio: 2.063033e-01	ci left: 1.082844e-04	ci right 1.335032e-04	k: 360	n:2990000
Cons ci ratio: 3.716785e-03	ci left: 2.706433e-01	ci right 2.716514e-01	k: 810730	n:2990000
KS ci ratio: 2.938076e-01	ci left: 5.079755e-05	ci right 6.858934e-05	k: 177	n:2990000
LPA   2990000 perm   4466 sec   (669 perm/sec)   p_kst 5.919732e-05   p_cons 2.711472e-01   p_joint 1.204013e-04

Joint ci ratio: 2.057342e-01	ci left: 1.085557e-04	ci right 1.337592e-04	k: 362	n:3000000
Cons ci ratio: 3.710778e-03	ci left: 2.706237e-01	ci right 2.716301e-01	k: 813380	n:3000000
KS ci ratio: 2.938077e-01	ci left: 5.062822e-05	ci right 6.836071e-05	k: 177	n:3000000
LPA   3000000 perm   4493 sec   (668 perm/sec)   p_kst 5.900000e-05   p_cons 2.711267e-01   p_joint 1.206667e-04

Joint ci ratio: 2.057342e-01	ci left: 1.081950e-04	ci right 1.333148e-04	k: 362	n:3010000
Cons ci ratio: 3.704529e-03	ci left: 2.706331e-01	ci right 2.716378e-01	k: 816117	n:3010000
KS ci ratio: 2.938077e-01	ci left: 5.046002e-05	ci right 6.813359e-05	k: 177	n:3010000
LPA   3010000 perm   4520 sec   (666 perm/sec)   p_kst 5.880399e-05   p_cons 2.711352e-01   p_joint 1.202658e-04

Joint ci ratio: 2.051697e-01	ci left: 1.084650e-04	ci right 1.335697e-04	k: 364	n:3020000
Cons ci ratio: 3.698506e-03	ci left: 2.706215e-01	ci right 2.716246e-01	k: 818791	n:3020000
KS ci ratio: 2.938077e-01	ci left: 5.029293e-05	ci right 6.790799e-05	k: 177	n:3020000
LPA   3020000 perm   4547 sec   (664 perm/sec)   p_kst 5.860927e-05   p_cons 2.711228e-01   p_joint 1.205298e-04

Joint ci ratio: 2.043317e-01	ci left: 1.090463e-04	ci right 1.341696e-04	k: 367	n:3030000
Cons ci ratio: 3.692226e-03	ci left: 2.706408e-01	ci right 2.716422e-01	k: 821558	n:3030000
KS ci ratio: 2.938077e-01	ci left: 5.012695e-05	ci right 6.768387e-05	k: 177	n:3030000
LPA   3030000 perm   4575 sec   (662 perm/sec)   p_kst 5.841584e-05   p_cons 2.711413e-01   p_joint 1.211221e-04

Joint ci ratio: 2.043317e-01	ci left: 1.086876e-04	ci right 1.337283e-04	k: 367	n:3040000
Cons ci ratio: 3.686478e-03	ci left: 2.706063e-01	ci right 2.716060e-01	k: 824162	n:3040000
KS ci ratio: 2.938078e-01	ci left: 4.996206e-05	ci right 6.746123e-05	k: 177	n:3040000
LPA   3040000 perm   4602 sec   (661 perm/sec)   p_kst 5.822368e-05   p_cons 2.711059e-01   p_joint 1.207237e-04

Joint ci ratio: 2.040547e-01	ci left: 1.086424e-04	ci right 1.336344e-04	k: 368	n:3050000
Cons ci ratio: 3.680353e-03	ci left: 2.706153e-01	ci right 2.716134e-01	k: 826898	n:3050000
KS ci ratio: 2.929859e-01	ci left: 5.010199e-05	ci right 6.759197e-05	k: 178	n:3050000
LPA   3050000 perm   4629 sec   (659 perm/sec)   p_kst 5.836066e-05   p_cons 2.711141e-01   p_joint 1.206557e-04

Joint ci ratio: 2.032301e-01	ci left: 1.092177e-04	ci right 1.342280e-04	k: 371	n:3060000
Cons ci ratio: 3.674119e-03	ci left: 2.706392e-01	ci right 2.716357e-01	k: 829680	n:3060000
KS ci ratio: 2.905610e-01	ci left: 5.084691e-05	ci right 6.842302e-05	k: 181	n:3060000
LPA   3060000 perm   4657 sec   (657 perm/sec)   p_kst 5.915033e-05   p_cons 2.711373e-01   p_joint 1.212418e-04

Joint ci ratio: 2.029575e-01	ci left: 1.091711e-04	ci right 1.341331e-04	k: 372	n:3070000
Cons ci ratio: 3.668110e-03	ci left: 2.706422e-01	ci right 2.716371e-01	k: 832398	n:3070000
KS ci ratio: 2.905611e-01	ci left: 5.068128e-05	ci right 6.820014e-05	k: 181	n:3070000
LPA   3070000 perm   4684 sec   (655 perm/sec)   p_kst 5.895765e-05   p_cons 2.711394e-01   p_joint 1.211726e-04

Joint ci ratio: 2.026860e-01	ci left: 1.091249e-04	ci right 1.340387e-04	k: 373	n:3080000
Cons ci ratio: 3.662236e-03	ci left: 2.706338e-01	ci right 2.716270e-01	k: 835081	n:3080000
KS ci ratio: 2.897661e-01	ci left: 5.081778e-05	ci right 6.832695e-05	k: 182	n:3080000
LPA   3080000 perm   4711 sec   (654 perm/sec)   p_kst 5.909091e-05   p_cons 2.711302e-01   p_joint 1.211039e-04

Joint ci ratio: 2.018779e-01	ci left: 1.096934e-04	ci right 1.346249e-04	k: 376	n:3090000
Cons ci ratio: 3.656411e-03	ci left: 2.706232e-01	ci right 2.716148e-01	k: 837757	n:3090000
KS ci ratio: 2.874196e-01	ci left: 5.155393e-05	ci right 6.914678e-05	k: 185	n:3090000
LPA   3090000 perm   4738 sec   (652 perm/sec)   p_kst 5.987055e-05   p_cons 2.711188e-01   p_joint 1.216828e-04

Joint ci ratio: 2.013445e-01	ci left: 1.099522e-04	ci right 1.348683e-04	k: 378	n:3100000
Cons ci ratio: 3.650316e-03	ci left: 2.706449e-01	ci right 2.716349e-01	k: 840533	n:3100000
KS ci ratio: 2.866501e-01	ci left: 5.168699e-05	ci right 6.926946e-05	k: 186	n:3100000
LPA   3100000 perm   4766 sec   (650 perm/sec)   p_kst 6.000000e-05   p_cons 2.711397e-01   p_joint 1.219355e-04

Joint ci ratio: 2.010794e-01	ci left: 1.099040e-04	ci right 1.347724e-04	k: 379	n:3110000
Cons ci ratio: 3.644491e-03	ci left: 2.706404e-01	ci right 2.716288e-01	k: 843228	n:3110000
KS ci ratio: 2.858867e-01	ci left: 5.181926e-05	ci right 6.939130e-05	k: 187	n:3110000
LPA   3110000 perm   4793 sec   (649 perm/sec)   p_kst 6.012862e-05   p_cons 2.711344e-01   p_joint 1.218650e-04

Joint ci ratio: 2.010795e-01	ci left: 1.095517e-04	ci right 1.343404e-04	k: 379	n:3120000
Cons ci ratio: 3.638665e-03	ci left: 2.706392e-01	ci right 2.716260e-01	k: 845933	n:3120000
KS ci ratio: 2.851294e-01	ci left: 5.195074e-05	ci right 6.951229e-05	k: 188	n:3120000
LPA   3120000 perm   4821 sec   (647 perm/sec)   p_kst 6.025641e-05   p_cons 2.711324e-01   p_joint 1.214744e-04

Joint ci ratio: 2.008154e-01	ci left: 1.095051e-04	ci right 1.342468e-04	k: 380	n:3130000
Cons ci ratio: 3.632989e-03	ci left: 2.706245e-01	ci right 2.716098e-01	k: 848596	n:3130000
KS ci ratio: 2.851294e-01	ci left: 5.178476e-05	ci right 6.929021e-05	k: 188	n:3130000
LPA   3130000 perm   4847 sec   (646 perm/sec)   p_kst 6.006390e-05   p_cons 2.711169e-01   p_joint 1.214058e-04

Joint ci ratio: 3.608584e-01	ci left: 3.081608e-05	ci right 4.465634e-05	k: 117	n:3140000
Cons ci ratio: 3.572592e-03	ci left: 2.766588e-01	ci right 2.776493e-01	k: 870263	n:3140000
KS ci ratio: 2.843780e-01	ci left: 5.191557e-05	ci right 6.941069e-05	k: 189	n:3140000
LPA   3140000 perm   4874 sec   (644 perm/sec)   p_kst 6.019108e-05   p_cons 2.771538e-01   p_joint 3.726115e-05

Joint ci ratio: 3.608584e-01	ci left: 3.071825e-05	ci right 4.451458e-05	k: 117	n:3150000
Cons ci ratio: 3.566901e-03	ci left: 2.766613e-01	ci right 2.776502e-01	k: 873040	n:3150000
KS ci ratio: 2.843781e-01	ci left: 5.175076e-05	ci right 6.919034e-05	k: 189	n:3150000
LPA   3150000 perm   4901 sec   (643 perm/sec)   p_kst 6.000000e-05   p_cons 2.771556e-01   p_joint 3.714286e-05

Joint ci ratio: 3.608585e-01	ci left: 3.062104e-05	ci right 4.437371e-05	k: 117	n:3160000
Cons ci ratio: 3.561592e-03	ci left: 2.766240e-01	ci right 2.776112e-01	k: 875691	n:3160000
KS ci ratio: 2.843781e-01	ci left: 5.158699e-05	ci right 6.897138e-05	k: 189	n:3160000
LPA   3160000 perm   4929 sec   (641 perm/sec)   p_kst 5.981013e-05   p_cons 2.771174e-01   p_joint 3.702532e-05

Joint ci ratio: 3.593390e-01	ci left: 3.081136e-05	ci right 4.457760e-05	k: 118	n:3170000
Cons ci ratio: 3.555993e-03	ci left: 2.766222e-01	ci right 2.776079e-01	k: 878454	n:3170000
KS ci ratio: 2.836327e-01	ci left: 5.171724e-05	ci right 6.909167e-05	k: 190	n:3170000
LPA   3170000 perm   4956 sec   (640 perm/sec)   p_kst 5.993691e-05   p_cons 2.771148e-01   p_joint 3.722397e-05

Joint ci ratio: 3.593390e-01	ci left: 3.071447e-05	ci right 4.443742e-05	k: 118	n:3180000
Cons ci ratio: 3.550356e-03	ci left: 2.766276e-01	ci right 2.776118e-01	k: 881240	n:3180000
KS ci ratio: 2.836327e-01	ci left: 5.155461e-05	ci right 6.887440e-05	k: 190	n:3180000
LPA   3180000 perm   4984 sec   (638 perm/sec)   p_kst 5.974843e-05   p_cons 2.771195e-01   p_joint 3.710692e-05

Joint ci ratio: 3.593391e-01	ci left: 3.061819e-05	ci right 4.429812e-05	k: 118	n:3190000
Cons ci ratio: 3.544776e-03	ci left: 2.766296e-01	ci right 2.776122e-01	k: 884015	n:3190000
KS ci ratio: 2.836327e-01	ci left: 5.139300e-05	ci right 6.865850e-05	k: 190	n:3190000
LPA   3190000 perm   5012 sec   (636 perm/sec)   p_kst 5.956113e-05   p_cons 2.771207e-01   p_joint 3.699060e-05

Joint ci ratio: 3.593391e-01	ci left: 3.052250e-05	ci right 4.415969e-05	k: 118	n:3200000
Cons ci ratio: 3.539253e-03	ci left: 2.766281e-01	ci right 2.776092e-01	k: 886779	n:3200000
KS ci ratio: 2.828931e-01	ci left: 5.152270e-05	ci right 6.877858e-05	k: 191	n:3200000
LPA   3200000 perm   5040 sec   (635 perm/sec)   p_kst 5.968750e-05   p_cons 2.771184e-01   p_joint 3.687500e-05

Joint ci ratio: 3.593391e-01	ci left: 3.042742e-05	ci right 4.402212e-05	k: 118	n:3210000
Cons ci ratio: 3.533772e-03	ci left: 2.766248e-01	ci right 2.776043e-01	k: 889537	n:3210000
KS ci ratio: 2.821592e-01	ci left: 5.165165e-05	ci right 6.889786e-05	k: 192	n:3210000
LPA   3210000 perm   5068 sec   (633 perm/sec)   p_kst 5.981308e-05   p_cons 2.771143e-01   p_joint 3.676012e-05

Joint ci ratio: 3.703987e-01	ci left: 2.835826e-05	ci right 4.151309e-05	k: 111	n:3220000
Cons ci ratio: 3.528516e-03	ci left: 2.765988e-01	ci right 2.775768e-01	k: 892222	n:3220000
KS ci ratio: 2.821593e-01	ci left: 5.149124e-05	ci right 6.868389e-05	k: 192	n:3220000
LPA   3220000 perm   5097 sec   (632 perm/sec)   p_kst 5.962733e-05   p_cons 2.770876e-01   p_joint 3.447205e-05

Joint ci ratio: 3.687561e-01	ci left: 2.855131e-05	ci right 4.172280e-05	k: 112	n:3230000
Cons ci ratio: 3.523229e-03	ci left: 2.765792e-01	ci right 2.775556e-01	k: 894927	n:3230000
KS ci ratio: 2.821593e-01	ci left: 5.133182e-05	ci right 6.847125e-05	k: 192	n:3230000
LPA   3230000 perm   5125 sec   (630 perm/sec)   p_kst 5.944272e-05   p_cons 2.770672e-01   p_joint 3.467492e-05

Joint ci ratio: 3.671351e-01	ci left: 2.874329e-05	ci right 4.193108e-05	k: 113	n:3240000
Cons ci ratio: 3.517893e-03	ci left: 2.765680e-01	ci right 2.775429e-01	k: 897659	n:3240000
KS ci ratio: 2.799915e-01	ci left: 5.203406e-05	ci right 6.925093e-05	k: 195	n:3240000
LPA   3240000 perm   5154 sec   (629 perm/sec)   p_kst 6.018519e-05   p_cons 2.770552e-01   p_joint 3.487654e-05

Joint ci ratio: 3.655354e-01	ci left: 2.893422e-05	ci right 4.213795e-05	k: 114	n:3250000
Cons ci ratio: 3.512456e-03	ci left: 2.765710e-01	ci right 2.775445e-01	k: 900437	n:3250000
KS ci ratio: 2.792799e-01	ci left: 5.216008e-05	ci right 6.936706e-05	k: 196	n:3250000
LPA   3250000 perm   5183 sec   (627 perm/sec)   p_kst 6.030769e-05   p_cons 2.770575e-01   p_joint 3.507692e-05

Joint ci ratio: 3.639563e-01	ci left: 2.912410e-05	ci right 4.234343e-05	k: 115	n:3260000
Cons ci ratio: 3.507163e-03	ci left: 2.765605e-01	ci right 2.775325e-01	k: 903171	n:3260000
KS ci ratio: 2.778729e-01	ci left: 5.257072e-05	ci right 6.981052e-05	k: 198	n:3260000
LPA   3260000 perm   5212 sec   (626 perm/sec)   p_kst 6.073620e-05   p_cons 2.770463e-01   p_joint 3.527607e-05

Joint ci ratio: 3.639564e-01	ci left: 2.903504e-05	ci right 4.221394e-05	k: 115	n:3270000
Cons ci ratio: 3.501907e-03	ci left: 2.765486e-01	ci right 2.775191e-01	k: 905900	n:3270000
KS ci ratio: 2.771773e-01	ci left: 5.269449e-05	ci right 6.992407e-05	k: 199	n:3270000
LPA   3270000 perm   5241 sec   (624 perm/sec)   p_kst 6.085627e-05   p_cons 2.770336e-01   p_joint 3.516820e-05

Joint ci ratio: 3.639564e-01	ci left: 2.894652e-05	ci right 4.208524e-05	k: 115	n:3280000
Cons ci ratio: 3.496662e-03	ci left: 2.765383e-01	ci right 2.775072e-01	k: 908634	n:3280000
KS ci ratio: 2.771774e-01	ci left: 5.253383e-05	ci right 6.971089e-05	k: 199	n:3280000
LPA   3280000 perm   5270 sec   (622 perm/sec)   p_kst 6.067073e-05   p_cons 2.770226e-01   p_joint 3.506098e-05

Joint ci ratio: 3.623976e-01	ci left: 2.913475e-05	ci right 4.228889e-05	k: 116	n:3290000
Cons ci ratio: 3.491262e-03	ci left: 2.765484e-01	ci right 2.775158e-01	k: 911435	n:3290000
KS ci ratio: 2.758017e-01	ci left: 5.293992e-05	ci right 7.014894e-05	k: 201	n:3290000
LPA   3290000 perm   5299 sec   (621 perm/sec)   p_kst 6.109422e-05   p_cons 2.770319e-01   p_joint 3.525836e-05

Joint ci ratio: 3.623976e-01	ci left: 2.904646e-05	ci right 4.216075e-05	k: 116	n:3300000
Cons ci ratio: 3.486053e-03	ci left: 2.765393e-01	ci right 2.775053e-01	k: 914173	n:3300000
KS ci ratio: 2.758018e-01	ci left: 5.277949e-05	ci right 6.993637e-05	k: 201	n:3300000
LPA   3300000 perm   5328 sec   (619 perm/sec)   p_kst 6.090909e-05   p_cons 2.770221e-01   p_joint 3.515152e-05

Joint ci ratio: 3.608588e-01	ci left: 2.923337e-05	ci right 4.236282e-05	k: 117	n:3310000
Cons ci ratio: 3.480690e-03	ci left: 2.765509e-01	ci right 2.775154e-01	k: 916979	n:3310000
KS ci ratio: 2.744464e-01	ci left: 5.318259e-05	ci right 7.037088e-05	k: 203	n:3310000
LPA   3310000 perm   5358 sec   (618 perm/sec)   p_kst 6.132931e-05   p_cons 2.770329e-01   p_joint 3.534743e-05

Joint ci ratio: 3.608588e-01	ci left: 2.914532e-05	ci right 4.223522e-05	k: 117	n:3320000
Cons ci ratio: 3.475421e-03	ci left: 2.765542e-01	ci right 2.775173e-01	k: 919758	n:3320000
KS ci ratio: 2.744464e-01	ci left: 5.302240e-05	ci right 7.015892e-05	k: 203	n:3320000
LPA   3320000 perm   5388 sec   (616 perm/sec)   p_kst 6.114458e-05   p_cons 2.770355e-01   p_joint 3.524096e-05

Joint ci ratio: 3.608588e-01	ci left: 2.905780e-05	ci right 4.210839e-05	k: 117	n:3330000
Cons ci ratio: 3.470233e-03	ci left: 2.765509e-01	ci right 2.775125e-01	k: 922515	n:3330000
KS ci ratio: 2.744464e-01	ci left: 5.286317e-05	ci right 6.994824e-05	k: 203	n:3330000
LPA   3330000 perm   5417 sec   (615 perm/sec)   p_kst 6.096096e-05   p_cons 2.770315e-01   p_joint 3.513514e-05

Joint ci ratio: 3.608588e-01	ci left: 2.897080e-05	ci right 4.198232e-05	k: 117	n:3340000
Cons ci ratio: 3.464953e-03	ci left: 2.765611e-01	ci right 2.775213e-01	k: 925317	n:3340000
KS ci ratio: 2.744465e-01	ci left: 5.270490e-05	ci right 6.973881e-05	k: 203	n:3340000
LPA   3340000 perm   5447 sec   (613 perm/sec)   p_kst 6.077844e-05   p_cons 2.770410e-01   p_joint 3.502994e-05

Joint ci ratio: 3.608588e-01	ci left: 2.888432e-05	ci right 4.185700e-05	k: 117	n:3350000
Cons ci ratio: 3.459943e-03	ci left: 2.765426e-01	ci right 2.775014e-01	k: 928023	n:3350000
KS ci ratio: 2.744465e-01	ci left: 5.254757e-05	ci right 6.953064e-05	k: 203	n:3350000
LPA   3350000 perm   5476 sec   (612 perm/sec)   p_kst 6.059701e-05   p_cons 2.770218e-01   p_joint 3.492537e-05

Joint ci ratio: 3.608589e-01	ci left: 2.879835e-05	ci right 4.173242e-05	k: 117	n:3360000
Cons ci ratio: 3.454932e-03	ci left: 2.765269e-01	ci right 2.774842e-01	k: 930738	n:3360000
KS ci ratio: 2.744465e-01	ci left: 5.239118e-05	ci right 6.932370e-05	k: 203	n:3360000
LPA   3360000 perm   5506 sec   (610 perm/sec)   p_kst 6.041667e-05   p_cons 2.770054e-01   p_joint 3.482143e-05

Joint ci ratio: 3.563572e-01	ci left: 2.952291e-05	ci right 4.257866e-05	k: 120	n:3370000
Cons ci ratio: 3.449739e-03	ci left: 2.765350e-01	ci right 2.774909e-01	k: 933533	n:3370000
KS ci ratio: 2.744465e-01	ci left: 5.223572e-05	ci right 6.911799e-05	k: 203	n:3370000
LPA   3370000 perm   5536 sec   (609 perm/sec)   p_kst 6.023739e-05   p_cons 2.770128e-01   p_joint 3.560831e-05

Joint ci ratio: 3.563572e-01	ci left: 2.943557e-05	ci right 4.245269e-05	k: 120	n:3380000
Cons ci ratio: 3.444660e-03	ci left: 2.765324e-01	ci right 2.774869e-01	k: 936292	n:3380000
KS ci ratio: 2.744466e-01	ci left: 5.208117e-05	ci right 6.891350e-05	k: 203	n:3380000
LPA   3380000 perm   5566 sec   (607 perm/sec)   p_kst 6.005917e-05   p_cons 2.770095e-01   p_joint 3.550296e-05

Joint ci ratio: 3.548937e-01	ci left: 2.961737e-05	ci right 4.264869e-05	k: 121	n:3390000
Cons ci ratio: 3.439508e-03	ci left: 2.765411e-01	ci right 2.774941e-01	k: 939089	n:3390000
KS ci ratio: 2.737764e-01	ci left: 5.220225e-05	ci right 6.902543e-05	k: 204	n:3390000
LPA   3390000 perm   5596 sec   (606 perm/sec)   p_kst 6.017699e-05   p_cons 2.770174e-01   p_joint 3.569322e-05

Joint ci ratio: 3.506090e-01	ci left: 3.033444e-05	ci right 4.348347e-05	k: 124	n:3400000
Cons ci ratio: 3.434174e-03	ci left: 2.765735e-01	ci right 2.775252e-01	k: 941967	n:3400000
KS ci ratio: 2.731110e-01	ci left: 5.232267e-05	ci right 6.913664e-05	k: 205	n:3400000
LPA   3400000 perm   5627 sec   (604 perm/sec)   p_kst 6.029412e-05   p_cons 2.770491e-01   p_joint 3.647059e-05

Joint ci ratio: 3.492149e-01	ci left: 3.051296e-05	ci right 4.367488e-05	k: 125	n:3410000
Cons ci ratio: 3.429262e-03	ci left: 2.765594e-01	ci right 2.775096e-01	k: 944687	n:3410000
KS ci ratio: 2.731111e-01	ci left: 5.216923e-05	ci right 6.893390e-05	k: 205	n:3410000
LPA   3410000 perm   5657 sec   (603 perm/sec)   p_kst 6.011730e-05   p_cons 2.770343e-01   p_joint 3.665689e-05

Joint ci ratio: 3.492149e-01	ci left: 3.042374e-05	ci right 4.354717e-05	k: 125	n:3420000
Cons ci ratio: 3.424190e-03	ci left: 2.765664e-01	ci right 2.775153e-01	k: 947479	n:3420000
KS ci ratio: 2.717948e-01	ci left: 5.256154e-05	ci right 6.935698e-05	k: 207	n:3420000
LPA   3420000 perm   5687 sec   (601 perm/sec)   p_kst 6.052632e-05   p_cons 2.770406e-01   p_joint 3.654971e-05

Joint ci ratio: 3.478373e-01	ci left: 3.060107e-05	ci right 4.373718e-05	k: 126	n:3430000
Cons ci ratio: 3.419445e-03	ci left: 2.765378e-01	ci right 2.774853e-01	k: 950149	n:3430000
KS ci ratio: 2.704974e-01	ci left: 5.295176e-05	ci right 6.977740e-05	k: 209	n:3430000
LPA   3430000 perm   5718 sec   (600 perm/sec)   p_kst 6.093294e-05   p_cons 2.770114e-01   p_joint 3.673469e-05

Joint ci ratio: 3.478373e-01	ci left: 3.051211e-05	ci right 4.361004e-05	k: 126	n:3440000
Cons ci ratio: 3.414457e-03	ci left: 2.765402e-01	ci right 2.774863e-01	k: 952925	n:3440000
KS ci ratio: 2.704974e-01	ci left: 5.279783e-05	ci right 6.957456e-05	k: 209	n:3440000
LPA   3440000 perm   5748 sec   (598 perm/sec)   p_kst 6.075581e-05   p_cons 2.770131e-01   p_joint 3.662791e-05

Joint ci ratio: 2.074576e-01	ci left: 9.274701e-05	ci right 1.144835e-04	k: 356	n:3450000
Cons ci ratio: 3.409337e-03	ci left: 2.765606e-01	ci right 2.775053e-01	k: 955763	n:3450000
KS ci ratio: 2.685856e-01	ci left: 5.345560e-05	ci right 7.030108e-05	k: 212	n:3450000
LPA   3450000 perm   5778 sec   (597 perm/sec)   p_kst 6.144928e-05   p_cons 2.770328e-01   p_joint 1.031884e-04

Joint ci ratio: 2.095222e-01	ci left: 9.056144e-05	ci right 1.120240e-04	k: 349	n:3460000
Cons ci ratio: 3.404484e-03	ci left: 2.765522e-01	ci right 2.774956e-01	k: 958502	n:3460000
KS ci ratio: 2.679574e-01	ci left: 5.357069e-05	ci right 7.040630e-05	k: 213	n:3460000
LPA   3460000 perm   5809 sec   (596 perm/sec)   p_kst 6.156069e-05   p_cons 2.770237e-01   p_joint 1.008671e-04

Joint ci ratio: 2.092235e-01	ci left: 9.057353e-05	ci right 1.120045e-04	k: 350	n:3470000
Cons ci ratio: 3.399521e-03	ci left: 2.765591e-01	ci right 2.775012e-01	k: 961294	n:3470000
KS ci ratio: 2.679574e-01	ci left: 5.341631e-05	ci right 7.020341e-05	k: 213	n:3470000
LPA   3470000 perm   5840 sec   (594 perm/sec)   p_kst 6.138329e-05   p_cons 2.770300e-01   p_joint 1.008646e-04

Joint ci ratio: 2.089261e-01	ci left: 9.058557e-05	ci right 1.119850e-04	k: 351	n:3480000
Cons ci ratio: 3.394603e-03	ci left: 2.765635e-01	ci right 2.775042e-01	k: 964077	n:3480000
KS ci ratio: 2.679574e-01	ci left: 5.326281e-05	ci right 7.000167e-05	k: 213	n:3480000
LPA   3480000 perm   5871 sec   (593 perm/sec)   p_kst 6.120690e-05   p_cons 2.770336e-01   p_joint 1.008621e-04

Joint ci ratio: 2.089261e-01	ci left: 9.032601e-05	ci right 1.116641e-04	k: 351	n:3490000
Cons ci ratio: 3.389657e-03	ci left: 2.765735e-01	ci right 2.775128e-01	k: 966880	n:3490000
KS ci ratio: 2.679574e-01	ci left: 5.311019e-05	ci right 6.980110e-05	k: 213	n:3490000
LPA   3490000 perm   5901 sec   (591 perm/sec)   p_kst 6.103152e-05   p_cons 2.770430e-01   p_joint 1.005731e-04

Joint ci ratio: 2.086300e-01	ci left: 9.033872e-05	ci right 1.116457e-04	k: 352	n:3500000
Cons ci ratio: 3.384875e-03	ci left: 2.765666e-01	ci right 2.775046e-01	k: 969624	n:3500000
KS ci ratio: 2.673335e-01	ci left: 5.322500e-05	ci right 6.990650e-05	k: 214	n:3500000
LPA   3500000 perm   5935 sec   (590 perm/sec)   p_kst 6.114286e-05   p_cons 2.770354e-01   p_joint 1.005714e-04

Joint ci ratio: 2.086300e-01	ci left: 9.008134e-05	ci right 1.113276e-04	k: 352	n:3510000
Cons ci ratio: 3.380086e-03	ci left: 2.765629e-01	ci right 2.774996e-01	k: 972379	n:3510000
KS ci ratio: 2.667140e-01	ci left: 5.333919e-05	ci right 7.001127e-05	k: 215	n:3510000
LPA   3510000 perm   5966 sec   (588 perm/sec)   p_kst 6.125356e-05   p_cons 2.770311e-01   p_joint 1.002849e-04

Joint ci ratio: 2.083351e-01	ci left: 9.009469e-05	ci right 1.113103e-04	k: 353	n:3520000
Cons ci ratio: 3.375060e-03	ci left: 2.765899e-01	ci right 2.775252e-01	k: 975242	n:3520000
KS ci ratio: 2.660987e-01	ci left: 5.345278e-05	ci right 7.011539e-05	k: 216	n:3520000
LPA   3520000 perm   5998 sec   (587 perm/sec)   p_kst 6.136364e-05   p_cons 2.770574e-01   p_joint 1.002841e-04

Joint ci ratio: 2.083352e-01	ci left: 8.983946e-05	ci right 1.109950e-04	k: 353	n:3530000
Cons ci ratio: 3.370137e-03	ci left: 2.766071e-01	ci right 2.775411e-01	k: 978071	n:3530000
KS ci ratio: 2.654877e-01	ci left: 5.356576e-05	ci right 7.021888e-05	k: 217	n:3530000
LPA   3530000 perm   6028 sec   (586 perm/sec)   p_kst 6.147309e-05   p_cons 2.770739e-01   p_joint 1.000000e-04

Joint ci ratio: 2.080415e-01	ci left: 8.985344e-05	ci right 1.109786e-04	k: 354	n:3540000
Cons ci ratio: 3.365380e-03	ci left: 2.766070e-01	ci right 2.775397e-01	k: 980839	n:3540000
KS ci ratio: 2.648808e-01	ci left: 5.367816e-05	ci right 7.032174e-05	k: 218	n:3540000
LPA   3540000 perm   6060 sec   (584 perm/sec)   p_kst 6.158192e-05   p_cons 2.770732e-01   p_joint 1.000000e-04

Joint ci ratio: 2.080416e-01	ci left: 8.960033e-05	ci right 1.106660e-04	k: 354	n:3550000
Cons ci ratio: 3.360496e-03	ci left: 2.766243e-01	ci right 2.775558e-01	k: 983669	n:3550000
KS ci ratio: 2.648808e-01	ci left: 5.352695e-05	ci right 7.012365e-05	k: 218	n:3550000
LPA   3550000 perm   6091 sec   (583 perm/sec)   p_kst 6.140845e-05   p_cons 2.770899e-01   p_joint 9.971831e-05

Joint ci ratio: 2.077492e-01	ci left: 8.961492e-05	ci right 1.106506e-04	k: 355	n:3560000
Cons ci ratio: 3.355799e-03	ci left: 2.766219e-01	ci right 2.775520e-01	k: 986429	n:3560000
KS ci ratio: 2.648809e-01	ci left: 5.337659e-05	ci right 6.992668e-05	k: 218	n:3560000
LPA   3560000 perm   6123 sec   (581 perm/sec)   p_kst 6.123596e-05   p_cons 2.770868e-01   p_joint 9.971910e-05

Joint ci ratio: 2.074580e-01	ci left: 8.962944e-05	ci right 1.106353e-04	k: 356	n:3570000
Cons ci ratio: 3.351198e-03	ci left: 2.766103e-01	ci right 2.775391e-01	k: 989156	n:3570000
KS ci ratio: 2.648809e-01	ci left: 5.322708e-05	ci right 6.973080e-05	k: 218	n:3570000
LPA   3570000 perm   6154 sec   (580 perm/sec)   p_kst 6.106443e-05   p_cons 2.770745e-01   p_joint 9.971989e-05

Joint ci ratio: 2.074580e-01	ci left: 8.937908e-05	ci right 1.103263e-04	k: 356	n:3580000
Cons ci ratio: 3.346617e-03	ci left: 2.765987e-01	ci right 2.775262e-01	k: 991883	n:3580000
KS ci ratio: 2.648809e-01	ci left: 5.307840e-05	ci right 6.953603e-05	k: 218	n:3580000
LPA   3580000 perm   6185 sec   (579 perm/sec)   p_kst 6.089385e-05   p_cons 2.770623e-01   p_joint 9.944134e-05

Joint ci ratio: 2.065918e-01	ci left: 8.992245e-05	ci right 1.108979e-04	k: 359	n:3590000
Cons ci ratio: 3.341877e-03	ci left: 2.766084e-01	ci right 2.775346e-01	k: 994686	n:3590000
KS ci ratio: 2.636796e-01	ci left: 5.345075e-05	ci right 6.993626e-05	k: 220	n:3590000
LPA   3590000 perm   6217 sec   (577 perm/sec)   p_kst 6.128134e-05   p_cons 2.770713e-01   p_joint 1.000000e-04

Joint ci ratio: 2.063054e-01	ci left: 8.993608e-05	ci right 1.108820e-04	k: 360	n:3600000
Cons ci ratio: 3.337188e-03	ci left: 2.766144e-01	ci right 2.775393e-01	k: 997476	n:3600000
KS ci ratio: 2.636796e-01	ci left: 5.330227e-05	ci right 6.974199e-05	k: 220	n:3600000
LPA   3600000 perm   6249 sec   (576 perm/sec)   p_kst 6.111111e-05   p_cons 2.770767e-01   p_joint 1.000000e-04

Joint ci ratio: 2.060203e-01	ci left: 8.994966e-05	ci right 1.108661e-04	k: 361	n:3610000
Cons ci ratio: 3.332479e-03	ci left: 2.766251e-01	ci right 2.775487e-01	k: 1000283	n:3610000
KS ci ratio: 2.630850e-01	ci left: 5.341334e-05	ci right 6.984405e-05	k: 221	n:3610000
LPA   3610000 perm   6280 sec   (575 perm/sec)   p_kst 6.121884e-05   p_cons 2.770867e-01   p_joint 1.000000e-04

Joint ci ratio: 2.060203e-01	ci left: 8.970118e-05	ci right 1.105598e-04	k: 361	n:3620000
Cons ci ratio: 3.327852e-03	ci left: 2.766282e-01	ci right 2.775506e-01	k: 1003063	n:3620000
KS ci ratio: 2.630851e-01	ci left: 5.326579e-05	ci right 6.965111e-05	k: 221	n:3620000
LPA   3620000 perm   6312 sec   (574 perm/sec)   p_kst 6.104972e-05   p_cons 2.770892e-01   p_joint 9.972376e-05

Joint ci ratio: 2.060203e-01	ci left: 8.945407e-05	ci right 1.102553e-04	k: 361	n:3630000
Cons ci ratio: 3.323212e-03	ci left: 2.766352e-01	ci right 2.775563e-01	k: 1005857	n:3630000
KS ci ratio: 2.624945e-01	ci left: 5.337639e-05	ci right 6.975283e-05	k: 222	n:3630000
LPA   3630000 perm   6343 sec   (572 perm/sec)   p_kst 6.115702e-05   p_cons 2.770956e-01   p_joint 9.944904e-05

Joint ci ratio: 2.077494e-01	ci left: 8.764535e-05	ci right 1.082188e-04	k: 355	n:3640000
Cons ci ratio: 3.318658e-03	ci left: 2.766342e-01	ci right 2.775541e-01	k: 1008622	n:3640000
KS ci ratio: 2.619079e-01	ci left: 5.348642e-05	ci right 6.985394e-05	k: 223	n:3640000
LPA   3640000 perm   6376 sec   (571 perm/sec)   p_kst 6.126374e-05   p_cons 2.770940e-01   p_joint 9.752747e-05

Joint ci ratio: 2.071682e-01	ci left: 8.792470e-05	ci right 1.084986e-04	k: 357	n:3650000
Cons ci ratio: 3.314106e-03	ci left: 2.766351e-01	ci right 2.775537e-01	k: 1011394	n:3650000
KS ci ratio: 2.613252e-01	ci left: 5.359589e-05	ci right 6.995445e-05	k: 224	n:3650000
LPA   3650000 perm   6407 sec   (570 perm/sec)   p_kst 6.136986e-05   p_cons 2.770942e-01   p_joint 9.780822e-05

Joint ci ratio: 2.065920e-01	ci left: 8.820261e-05	ci right 1.087769e-04	k: 359	n:3660000
Cons ci ratio: 3.309336e-03	ci left: 2.766647e-01	ci right 2.775821e-01	k: 1014271	n:3660000
KS ci ratio: 2.607464e-01	ci left: 5.370480e-05	ci right 7.005438e-05	k: 225	n:3660000
LPA   3660000 perm   6439 sec   (568 perm/sec)   p_kst 6.147541e-05   p_cons 2.771232e-01   p_joint 9.808743e-05

Joint ci ratio: 2.063056e-01	ci left: 8.822067e-05	ci right 1.087671e-04	k: 360	n:3670000
Cons ci ratio: 3.304942e-03	ci left: 2.766511e-01	ci right 2.775672e-01	k: 1016990	n:3670000
KS ci ratio: 2.607465e-01	ci left: 5.355847e-05	ci right 6.986350e-05	k: 225	n:3670000
LPA   3670000 perm   6470 sec   (567 perm/sec)   p_kst 6.130790e-05   p_cons 2.771090e-01   p_joint 9.809264e-05

Joint ci ratio: 2.063056e-01	ci left: 8.798094e-05	ci right 1.084715e-04	k: 360	n:3680000
Cons ci ratio: 3.300480e-03	ci left: 2.766479e-01	ci right 2.775628e-01	k: 1019747	n:3680000
KS ci ratio: 2.607465e-01	ci left: 5.341293e-05	ci right 6.967365e-05	k: 225	n:3680000
LPA   3680000 perm   6502 sec   (566 perm/sec)   p_kst 6.114130e-05   p_cons 2.771052e-01   p_joint 9.782609e-05

Joint ci ratio: 2.063057e-01	ci left: 8.774251e-05	ci right 1.081775e-04	k: 360	n:3690000
Cons ci ratio: 3.296032e-03	ci left: 2.766453e-01	ci right 2.775589e-01	k: 1022506	n:3690000
KS ci ratio: 2.607465e-01	ci left: 5.326818e-05	ci right 6.948484e-05	k: 225	n:3690000
LPA   3690000 perm   6535 sec   (565 perm/sec)   p_kst 6.097561e-05   p_cons 2.771019e-01   p_joint 9.756098e-05

Joint ci ratio: 2.080420e-01	ci left: 8.596786e-05	ci right 1.061795e-04	k: 354	n:3700000
Cons ci ratio: 3.291432e-03	ci left: 2.766632e-01	ci right 2.775756e-01	k: 1025341	n:3700000
KS ci ratio: 2.607465e-01	ci left: 5.312421e-05	ci right 6.929704e-05	k: 225	n:3700000
LPA   3700000 perm   6567 sec   (563 perm/sec)   p_kst 6.081081e-05   p_cons 2.771192e-01   p_joint 9.567568e-05

Joint ci ratio: 2.077496e-01	ci left: 8.599165e-05	ci right 1.061769e-04	k: 355	n:3710000
Cons ci ratio: 3.286979e-03	ci left: 2.766656e-01	ci right 2.775768e-01	k: 1028119	n:3710000
KS ci ratio: 2.601715e-01	ci left: 5.323296e-05	ci right 6.939736e-05	k: 226	n:3710000
LPA   3710000 perm   6600 sec   (562 perm/sec)   p_kst 6.091644e-05   p_cons 2.771210e-01   p_joint 9.568733e-05

Joint ci ratio: 2.077496e-01	ci left: 8.576049e-05	ci right 1.058915e-04	k: 355	n:3720000
Cons ci ratio: 3.282501e-03	ci left: 2.766732e-01	ci right 2.775831e-01	k: 1030916	n:3720000
KS ci ratio: 2.601716e-01	ci left: 5.308986e-05	ci right 6.921081e-05	k: 226	n:3720000
LPA   3720000 perm   6632 sec   (561 perm/sec)   p_kst 6.075269e-05   p_cons 2.771280e-01   p_joint 9.543011e-05

Joint ci ratio: 2.074584e-01	ci left: 8.578473e-05	ci right 1.058896e-04	k: 356	n:3730000
Cons ci ratio: 3.278098e-03	ci left: 2.766737e-01	ci right 2.775824e-01	k: 1033687	n:3730000
KS ci ratio: 2.596004e-01	ci left: 5.319816e-05	ci right 6.931077e-05	k: 227	n:3730000
LPA   3730000 perm   6667 sec   (559 perm/sec)   p_kst 6.085791e-05   p_cons 2.771279e-01   p_joint 9.544236e-05

Joint ci ratio: 2.074585e-01	ci left: 8.555536e-05	ci right 1.056065e-04	k: 356	n:3740000
Cons ci ratio: 3.273705e-03	ci left: 2.766753e-01	ci right 2.775828e-01	k: 1036462	n:3740000
KS ci ratio: 2.596004e-01	ci left: 5.305592e-05	ci right 6.912545e-05	k: 227	n:3740000
LPA   3740000 perm   6700 sec   (558 perm/sec)   p_kst 6.069519e-05   p_cons 2.771289e-01   p_joint 9.518717e-05

Joint ci ratio: 2.071685e-01	ci left: 8.558003e-05	ci right 1.056054e-04	k: 357	n:3750000
Cons ci ratio: 3.269231e-03	ci left: 2.766889e-01	ci right 2.775952e-01	k: 1039282	n:3750000
KS ci ratio: 2.596004e-01	ci left: 5.291444e-05	ci right 6.894112e-05	k: 227	n:3750000
LPA   3750000 perm   6733 sec   (557 perm/sec)   p_kst 6.053333e-05   p_cons 2.771419e-01   p_joint 9.520000e-05

Joint ci ratio: 2.068798e-01	ci left: 8.560460e-05	ci right 1.056042e-04	k: 358	n:3760000
Cons ci ratio: 3.264786e-03	ci left: 2.767011e-01	ci right 2.776062e-01	k: 1042097	n:3760000
KS ci ratio: 2.584692e-01	ci left: 5.327109e-05	ci right 6.932414e-05	k: 229	n:3760000
LPA   3760000 perm   6766 sec   (556 perm/sec)   p_kst 6.090426e-05   p_cons 2.771535e-01   p_joint 9.521277e-05

Joint ci ratio: 2.065922e-01	ci left: 8.562905e-05	ci right 1.056031e-04	k: 359	n:3770000
Cons ci ratio: 3.260496e-03	ci left: 2.766965e-01	ci right 2.776004e-01	k: 1044849	n:3770000
KS ci ratio: 2.573527e-01	ci left: 5.362600e-05	ci right 6.970497e-05	k: 231	n:3770000
LPA   3770000 perm   6799 sec   (554 perm/sec)   p_kst 6.127321e-05   p_cons 2.771483e-01   p_joint 9.522546e-05

Joint ci ratio: 2.065923e-01	ci left: 8.540252e-05	ci right 1.053237e-04	k: 359	n:3780000
Cons ci ratio: 3.256194e-03	ci left: 2.766954e-01	ci right 2.775981e-01	k: 1047614	n:3780000
KS ci ratio: 2.573527e-01	ci left: 5.348414e-05	ci right 6.952057e-05	k: 231	n:3780000
LPA   3780000 perm   6832 sec   (553 perm/sec)   p_kst 6.111111e-05   p_cons 2.771466e-01   p_joint 9.497354e-05

Joint ci ratio: 2.065923e-01	ci left: 8.517718e-05	ci right 1.050458e-04	k: 359	n:3790000
Cons ci ratio: 3.251967e-03	ci left: 2.766872e-01	ci right 2.775886e-01	k: 1050352	n:3790000
KS ci ratio: 2.573527e-01	ci left: 5.334302e-05	ci right 6.933714e-05	k: 231	n:3790000
LPA   3790000 perm   6866 sec   (552 perm/sec)   p_kst 6.094987e-05   p_cons 2.771377e-01   p_joint 9.472296e-05

Joint ci ratio: 2.060208e-01	ci left: 8.545216e-05	ci right 1.053228e-04	k: 361	n:3800000
Cons ci ratio: 3.247682e-03	ci left: 2.766882e-01	ci right 2.775885e-01	k: 1053125	n:3800000
KS ci ratio: 2.573527e-01	ci left: 5.320264e-05	ci right 6.915467e-05	k: 231	n:3800000
LPA   3800000 perm   6899 sec   (551 perm/sec)   p_kst 6.078947e-05   p_cons 2.771382e-01   p_joint 9.500000e-05

Joint ci ratio: 2.060208e-01	ci left: 8.522787e-05	ci right 1.050464e-04	k: 361	n:3810000
Cons ci ratio: 3.243454e-03	ci left: 2.766842e-01	ci right 2.775833e-01	k: 1055879	n:3810000
KS ci ratio: 2.573527e-01	ci left: 5.306300e-05	ci right 6.897317e-05	k: 231	n:3810000
LPA   3810000 perm   6932 sec   (550 perm/sec)   p_kst 6.062992e-05   p_cons 2.771336e-01   p_joint 9.475066e-05

Joint ci ratio: 2.057368e-01	ci left: 8.525305e-05	ci right 1.050467e-04	k: 362	n:3820000
Cons ci ratio: 3.239211e-03	ci left: 2.766842e-01	ci right 2.775821e-01	k: 1058648	n:3820000
KS ci ratio: 2.573528e-01	ci left: 5.292409e-05	ci right 6.879261e-05	k: 231	n:3820000
LPA   3820000 perm   6966 sec   (548 perm/sec)   p_kst 6.047120e-05   p_cons 2.771330e-01   p_joint 9.476440e-05

Joint ci ratio: 2.054540e-01	ci left: 8.527811e-05	ci right 1.050469e-04	k: 363	n:3830000
Cons ci ratio: 3.235032e-03	ci left: 2.766782e-01	ci right 2.775749e-01	k: 1061394	n:3830000
KS ci ratio: 2.573528e-01	ci left: 5.278591e-05	ci right 6.861299e-05	k: 231	n:3830000
LPA   3830000 perm   6999 sec   (547 perm/sec)   p_kst 6.031332e-05   p_cons 2.771264e-01   p_joint 9.477807e-05

Joint ci ratio: 2.054541e-01	ci left: 8.505603e-05	ci right 1.047733e-04	k: 363	n:3840000
Cons ci ratio: 3.230875e-03	ci left: 2.766716e-01	ci right 2.775672e-01	k: 1064138	n:3840000
KS ci ratio: 2.573528e-01	ci left: 5.264844e-05	ci right 6.843432e-05	k: 231	n:3840000
LPA   3840000 perm   7032 sec   (546 perm/sec)   p_kst 6.015625e-05   p_cons 2.771193e-01   p_joint 9.453125e-05

Joint ci ratio: 2.051724e-01	ci left: 8.508149e-05	ci right 1.047743e-04	k: 364	n:3850000
Cons ci ratio: 3.226735e-03	ci left: 2.766649e-01	ci right 2.775593e-01	k: 1066881	n:3850000
KS ci ratio: 2.573528e-01	ci left: 5.251169e-05	ci right 6.825657e-05	k: 231	n:3850000
LPA   3850000 perm   7066 sec   (545 perm/sec)   p_kst 6.000000e-05   p_cons 2.771119e-01   p_joint 9.454545e-05

Joint ci ratio: 2.071688e-01	ci left: 8.314121e-05	ci right 1.025959e-04	k: 357	n:3860000
Cons ci ratio: 3.222597e-03	ci left: 2.766600e-01	ci right 2.775533e-01	k: 1069631	n:3860000
KS ci ratio: 2.573528e-01	ci left: 5.237565e-05	ci right 6.807974e-05	k: 231	n:3860000
LPA   3860000 perm   7100 sec   (544 perm/sec)   p_kst 5.984456e-05   p_cons 2.771065e-01   p_joint 9.248705e-05

Joint ci ratio: 2.071688e-01	ci left: 8.292638e-05	ci right 1.023308e-04	k: 357	n:3870000
Cons ci ratio: 3.218478e-03	ci left: 2.766546e-01	ci right 2.775467e-01	k: 1072379	n:3870000
KS ci ratio: 2.573529e-01	ci left: 5.224031e-05	ci right 6.790382e-05	k: 231	n:3870000
LPA   3870000 perm   7134 sec   (542 perm/sec)   p_kst 5.968992e-05   p_cons 2.771005e-01   p_joint 9.224806e-05

Joint ci ratio: 2.063062e-01	ci left: 8.344582e-05	ci right 1.028802e-04	k: 360	n:3880000
Cons ci ratio: 3.214369e-03	ci left: 2.766501e-01	ci right 2.775410e-01	k: 1075130	n:3880000
KS ci ratio: 2.562507e-01	ci left: 5.258796e-05	ci right 6.827738e-05	k: 233	n:3880000
LPA   3880000 perm   7168 sec   (541 perm/sec)   p_kst 6.005155e-05   p_cons 2.770954e-01   p_joint 9.278351e-05

Joint ci ratio: 2.063062e-01	ci left: 8.323131e-05	ci right 1.026157e-04	k: 360	n:3890000
Cons ci ratio: 3.210126e-03	ci left: 2.766643e-01	ci right 2.775541e-01	k: 1077954	n:3890000
KS ci ratio: 2.562507e-01	ci left: 5.245278e-05	ci right 6.810186e-05	k: 233	n:3890000
LPA   3890000 perm   7202 sec   (540 perm/sec)   p_kst 5.989717e-05   p_cons 2.771090e-01   p_joint 9.254499e-05

Joint ci ratio: 2.063062e-01	ci left: 8.301789e-05	ci right 1.023526e-04	k: 360	n:3900000
Cons ci ratio: 3.205944e-03	ci left: 2.766728e-01	ci right 2.775614e-01	k: 1080756	n:3900000
KS ci ratio: 2.562507e-01	ci left: 5.231828e-05	ci right 6.792724e-05	k: 233	n:3900000
LPA   3900000 perm   7236 sec   (539 perm/sec)   p_kst 5.974359e-05   p_cons 2.771169e-01   p_joint 9.230769e-05

Joint ci ratio: 2.060211e-01	ci left: 8.304812e-05	ci right 1.023598e-04	k: 361	n:3910000
Cons ci ratio: 3.201707e-03	ci left: 2.766902e-01	ci right 2.775777e-01	k: 1083593	n:3910000
KS ci ratio: 2.557049e-01	ci left: 5.242382e-05	ci right 6.802564e-05	k: 234	n:3910000
LPA   3910000 perm   7271 sec   (538 perm/sec)   p_kst 5.984655e-05   p_cons 2.771338e-01   p_joint 9.232737e-05

Joint ci ratio: 2.057371e-01	ci left: 8.307822e-05	ci right 1.023669e-04	k: 362	n:3920000
Cons ci ratio: 3.197671e-03	ci left: 2.766845e-01	ci right 2.775709e-01	k: 1086340	n:3920000
KS ci ratio: 2.557049e-01	ci left: 5.229009e-05	ci right 6.785210e-05	k: 234	n:3920000
LPA   3920000 perm   7305 sec   (537 perm/sec)   p_kst 5.969388e-05   p_cons 2.771276e-01   p_joint 9.234694e-05

Joint ci ratio: 2.057371e-01	ci left: 8.286682e-05	ci right 1.021064e-04	k: 362	n:3930000
Cons ci ratio: 3.193436e-03	ci left: 2.767056e-01	ci right 2.775909e-01	k: 1089192	n:3930000
KS ci ratio: 2.551626e-01	ci left: 5.239520e-05	ci right 6.795016e-05	k: 235	n:3930000
LPA   3930000 perm   7340 sec   (535 perm/sec)   p_kst 5.979644e-05   p_cons 2.771481e-01   p_joint 9.211196e-05

Joint ci ratio: 2.051726e-01	ci left: 8.313800e-05	ci right 1.023810e-04	k: 364	n:3940000
Cons ci ratio: 3.189261e-03	ci left: 2.767213e-01	ci right 2.776055e-01	k: 1092023	n:3940000
KS ci ratio: 2.535560e-01	ci left: 5.297510e-05	ci right 6.858755e-05	k: 238	n:3940000
LPA   3940000 perm   7374 sec   (534 perm/sec)   p_kst 6.040609e-05   p_cons 2.771632e-01   p_joint 9.238579e-05

Joint ci ratio: 2.048922e-01	ci left: 8.316769e-05	ci right 1.023879e-04	k: 365	n:3950000
Cons ci ratio: 3.185371e-03	ci left: 2.767029e-01	ci right 2.775860e-01	k: 1094720	n:3950000
KS ci ratio: 2.530272e-01	ci left: 5.307808e-05	ci right 6.868311e-05	k: 239	n:3950000
LPA   3950000 perm   7409 sec   (533 perm/sec)   p_kst 6.050633e-05   p_cons 2.771443e-01   p_joint 9.240506e-05

Joint ci ratio: 2.043346e-01	ci left: 8.343685e-05	ci right 1.026603e-04	k: 367	n:3960000
Cons ci ratio: 3.181378e-03	ci left: 2.766996e-01	ci right 2.775815e-01	k: 1097476	n:3960000
KS ci ratio: 2.514604e-01	ci left: 5.365374e-05	ci right 6.931504e-05	k: 242	n:3960000
LPA   3960000 perm   7443 sec   (532 perm/sec)   p_kst 6.111111e-05   p_cons 2.771404e-01   p_joint 9.267677e-05

Joint ci ratio: 2.063064e-01	ci left: 8.155409e-05	ci right 1.005479e-04	k: 360	n:3970000
Cons ci ratio: 3.177523e-03	ci left: 2.766807e-01	ci right 2.775615e-01	k: 1100170	n:3970000
KS ci ratio: 2.509445e-01	ci left: 5.375462e-05	ci right 6.940815e-05	k: 243	n:3970000
LPA   3970000 perm   7477 sec   (531 perm/sec)   p_kst 6.120907e-05   p_cons 2.771209e-01   p_joint 9.068010e-05

Joint ci ratio: 2.060212e-01	ci left: 8.158747e-05	ci right 1.005595e-04	k: 361	n:3980000
Cons ci ratio: 3.173589e-03	ci left: 2.766736e-01	ci right 2.775533e-01	k: 1102911	n:3980000
KS ci ratio: 2.509446e-01	ci left: 5.361956e-05	ci right 6.923376e-05	k: 243	n:3980000
LPA   3980000 perm   7512 sec   (530 perm/sec)   p_kst 6.105528e-05   p_cons 2.771133e-01   p_joint 9.070352e-05

Joint ci ratio: 2.060213e-01	ci left: 8.138299e-05	ci right 1.003075e-04	k: 361	n:3990000
Cons ci ratio: 3.169620e-03	ci left: 2.766729e-01	ci right 2.775515e-01	k: 1105677	n:3990000
KS ci ratio: 2.504319e-01	ci left: 5.372006e-05	ci right 6.932658e-05	k: 244	n:3990000
LPA   3990000 perm   7547 sec   (529 perm/sec)   p_kst 6.115288e-05   p_cons 2.771120e-01   p_joint 9.047619e-05

Joint ci ratio: 2.054545e-01	ci left: 8.165378e-05	ci right 1.005824e-04	k: 363	n:4000000
Cons ci ratio: 3.165665e-03	ci left: 2.766722e-01	ci right 2.775496e-01	k: 1108443	n:4000000
KS ci ratio: 2.494159e-01	ci left: 5.405444e-05	ci right 6.968451e-05	k: 246	n:4000000
LPA   4000000 perm   7582 sec   (528 perm/sec)   p_kst 6.150000e-05   p_cons 2.771108e-01   p_joint 9.075000e-05

Joint ci ratio: 2.054545e-01	ci left: 8.145015e-05	ci right 1.003316e-04	k: 363	n:4010000
Cons ci ratio: 3.161667e-03	ci left: 2.766789e-01	ci right 2.775553e-01	k: 1111239	n:4010000
KS ci ratio: 2.494159e-01	ci left: 5.391964e-05	ci right 6.951074e-05	k: 246	n:4010000
LPA   4010000 perm   7617 sec   (526 perm/sec)   p_kst 6.134663e-05   p_cons 2.771170e-01   p_joint 9.052369e-05

Joint ci ratio: 2.054545e-01	ci left: 8.124754e-05	ci right 1.000820e-04	k: 363	n:4020000
Cons ci ratio: 3.157803e-03	ci left: 2.766705e-01	ci right 2.775458e-01	k: 1113974	n:4020000
KS ci ratio: 2.494159e-01	ci left: 5.378552e-05	ci right 6.933783e-05	k: 246	n:4020000
LPA   4020000 perm   7651 sec   (525 perm/sec)   p_kst 6.119403e-05   p_cons 2.771080e-01   p_joint 9.029851e-05

Joint ci ratio: 2.048924e-01	ci left: 8.151671e-05	ci right 1.003554e-04	k: 365	n:4030000
Cons ci ratio: 3.154006e-03	ci left: 2.766554e-01	ci right 2.775296e-01	k: 1116682	n:4030000
KS ci ratio: 2.489126e-01	ci left: 5.388470e-05	ci right 6.942937e-05	k: 247	n:4030000
LPA   4030000 perm   7687 sec   (524 perm/sec)   p_kst 6.129032e-05   p_cons 2.770923e-01   p_joint 9.057072e-05

Joint ci ratio: 2.071692e-01	ci left: 7.943689e-05	ci right 9.802481e-05	k: 357	n:4040000
Cons ci ratio: 3.150031e-03	ci left: 2.766646e-01	ci right 2.775377e-01	k: 1119488	n:4040000
KS ci ratio: 2.489126e-01	ci left: 5.375132e-05	ci right 6.925752e-05	k: 247	n:4040000
LPA   4040000 perm   7722 sec   (523 perm/sec)   p_kst 6.113861e-05   p_cons 2.771010e-01   p_joint 8.836634e-05

Joint ci ratio: 2.068805e-01	ci left: 7.947486e-05	ci right 9.804247e-05	k: 358	n:4050000
Cons ci ratio: 3.146185e-03	ci left: 2.766595e-01	ci right 2.775315e-01	k: 1122236	n:4050000
KS ci ratio: 2.489126e-01	ci left: 5.361860e-05	ci right 6.908651e-05	k: 247	n:4050000
LPA   4050000 perm   7758 sec   (522 perm/sec)   p_kst 6.098765e-05   p_cons 2.770953e-01   p_joint 8.839506e-05

Joint ci ratio: 2.065930e-01	ci left: 7.951266e-05	ci right 9.806002e-05	k: 359	n:4060000
Cons ci ratio: 3.142259e-03	ci left: 2.766662e-01	ci right 2.775371e-01	k: 1125032	n:4060000
KS ci ratio: 2.484123e-01	ci left: 5.371749e-05	ci right 6.917797e-05	k: 248	n:4060000
LPA   4060000 perm   7792 sec   (521 perm/sec)   p_kst 6.108374e-05   p_cons 2.771015e-01   p_joint 8.842365e-05

Joint ci ratio: 2.071693e-01	ci left: 7.885135e-05	ci right 9.730227e-05	k: 357	n:4070000
Cons ci ratio: 3.138300e-03	ci left: 2.766790e-01	ci right 2.775489e-01	k: 1127853	n:4070000
KS ci ratio: 2.484123e-01	ci left: 5.358551e-05	ci right 6.900800e-05	k: 248	n:4070000
LPA   4070000 perm   7828 sec   (520 perm/sec)   p_kst 6.093366e-05   p_cons 2.771138e-01   p_joint 8.771499e-05

Joint ci ratio: 2.065930e-01	ci left: 7.912289e-05	ci right 9.757934e-05	k: 359	n:4080000
Cons ci ratio: 3.134406e-03	ci left: 2.766853e-01	ci right 2.775542e-01	k: 1130648	n:4080000
KS ci ratio: 2.484123e-01	ci left: 5.345417e-05	ci right 6.883886e-05	k: 248	n:4080000
LPA   4080000 perm   7863 sec   (519 perm/sec)   p_kst 6.078431e-05   p_cons 2.771196e-01   p_joint 8.799020e-05

Joint ci ratio: 2.063067e-01	ci left: 7.916130e-05	ci right 9.759788e-05	k: 360	n:4090000
Cons ci ratio: 3.130630e-03	ci left: 2.766785e-01	ci right 2.775463e-01	k: 1133389	n:4090000
KS ci ratio: 2.479150e-01	ci left: 5.355277e-05	ci right 6.893023e-05	k: 249	n:4090000
LPA   4090000 perm   7897 sec   (518 perm/sec)   p_kst 6.088020e-05   p_cons 2.771122e-01   p_joint 8.801956e-05

Joint ci ratio: 2.060215e-01	ci left: 7.919953e-05	ci right 9.761631e-05	k: 361	n:4100000
Cons ci ratio: 3.126913e-03	ci left: 2.766658e-01	ci right 2.775325e-01	k: 1136106	n:4100000
KS ci ratio: 2.479150e-01	ci left: 5.342215e-05	ci right 6.876211e-05	k: 249	n:4100000
LPA   4100000 perm   7933 sec   (517 perm/sec)   p_kst 6.073171e-05   p_cons 2.770990e-01   p_joint 8.804878e-05

Joint ci ratio: 2.060215e-01	ci left: 7.900683e-05	ci right 9.737880e-05	k: 361	n:4110000
Cons ci ratio: 3.123105e-03	ci left: 2.766666e-01	ci right 2.775322e-01	k: 1138878	n:4110000
KS ci ratio: 2.474206e-01	ci left: 5.352038e-05	ci right 6.885318e-05	k: 250	n:4110000
LPA   4110000 perm   7968 sec   (516 perm/sec)   p_kst 6.082725e-05   p_cons 2.770993e-01   p_joint 8.783455e-05

Joint ci ratio: 2.054547e-01	ci left: 7.927550e-05	ci right 9.765286e-05	k: 363	n:4120000
Cons ci ratio: 3.119331e-03	ci left: 2.766647e-01	ci right 2.775293e-01	k: 1141639	n:4120000
KS ci ratio: 2.464407e-01	ci left: 5.384588e-05	ci right 6.920147e-05	k: 252	n:4120000
LPA   4120000 perm   8003 sec   (515 perm/sec)   p_kst 6.116505e-05   p_cons 2.770968e-01   p_joint 8.810680e-05

Joint ci ratio: 2.054547e-01	ci left: 7.908355e-05	ci right 9.741641e-05	k: 363	n:4130000
Cons ci ratio: 3.115547e-03	ci left: 2.766660e-01	ci right 2.775295e-01	k: 1144413	n:4130000
KS ci ratio: 2.464407e-01	ci left: 5.371550e-05	ci right 6.903392e-05	k: 252	n:4130000
LPA   4130000 perm   8038 sec   (514 perm/sec)   p_kst 6.101695e-05   p_cons 2.770976e-01   p_joint 8.789346e-05

Joint ci ratio: 2.051731e-01	ci left: 7.912165e-05	ci right 9.743505e-05	k: 364	n:4140000
Cons ci ratio: 3.111917e-03	ci left: 2.766491e-01	ci right 2.775116e-01	k: 1147112	n:4140000
KS ci ratio: 2.464407e-01	ci left: 5.358575e-05	ci right 6.886717e-05	k: 252	n:4140000
LPA   4140000 perm   8074 sec   (513 perm/sec)   p_kst 6.086957e-05   p_cons 2.770802e-01   p_joint 8.792271e-05

Joint ci ratio: 2.048926e-01	ci left: 7.915959e-05	ci right 9.745359e-05	k: 365	n:4150000
Cons ci ratio: 3.108221e-03	ci left: 2.766425e-01	ci right 2.775039e-01	k: 1149853	n:4150000
KS ci ratio: 2.459551e-01	ci left: 5.368273e-05	ci right 6.895702e-05	k: 253	n:4150000
LPA   4150000 perm   8110 sec   (512 perm/sec)   p_kst 6.096386e-05   p_cons 2.770730e-01   p_joint 8.795181e-05

Joint ci ratio: 2.048926e-01	ci left: 7.896930e-05	ci right 9.721932e-05	k: 365	n:4160000
Cons ci ratio: 3.104460e-03	ci left: 2.766459e-01	ci right 2.775063e-01	k: 1152636	n:4160000
KS ci ratio: 2.454724e-01	ci left: 5.377927e-05	ci right 6.904642e-05	k: 254	n:4160000
LPA   4160000 perm   8145 sec   (511 perm/sec)   p_kst 6.105769e-05   p_cons 2.770760e-01   p_joint 8.774038e-05

Joint ci ratio: 2.043351e-01	ci left: 7.923497e-05	ci right 9.749034e-05	k: 367	n:4170000
Cons ci ratio: 3.100720e-03	ci left: 2.766484e-01	ci right 2.775078e-01	k: 1155415	n:4170000
KS ci ratio: 2.454724e-01	ci left: 5.365030e-05	ci right 6.888084e-05	k: 254	n:4170000
LPA   4170000 perm   8184 sec   (510 perm/sec)   p_kst 6.091127e-05   p_cons 2.770779e-01   p_joint 8.800959e-05

Joint ci ratio: 2.043351e-01	ci left: 7.904542e-05	ci right 9.725711e-05	k: 367	n:4180000
Cons ci ratio: 3.096919e-03	ci left: 2.766605e-01	ci right 2.775188e-01	k: 1158234	n:4180000
KS ci ratio: 2.449925e-01	ci left: 5.374649e-05	ci right 6.896996e-05	k: 255	n:4180000
LPA   4180000 perm   8220 sec   (508 perm/sec)   p_kst 6.100478e-05   p_cons 2.770895e-01   p_joint 8.779904e-05

Joint ci ratio: 2.040580e-01	ci left: 7.908322e-05	ci right 9.727584e-05	k: 368	n:4190000
Cons ci ratio: 3.093129e-03	ci left: 2.766729e-01	ci right 2.775303e-01	k: 1161055	n:4190000
KS ci ratio: 2.445154e-01	ci left: 5.384224e-05	ci right 6.905862e-05	k: 256	n:4190000
LPA   4190000 perm   8257 sec   (507 perm/sec)   p_kst 6.109785e-05   p_cons 2.771014e-01   p_joint 8.782816e-05

Joint ci ratio: 2.040581e-01	ci left: 7.889493e-05	ci right 9.704423e-05	k: 368	n:4200000
Cons ci ratio: 3.089507e-03	ci left: 2.766653e-01	ci right 2.775216e-01	k: 1163792	n:4200000
KS ci ratio: 2.445154e-01	ci left: 5.371405e-05	ci right 6.889420e-05	k: 256	n:4200000
LPA   4200000 perm   8294 sec   (506 perm/sec)   p_kst 6.095238e-05   p_cons 2.770933e-01   p_joint 8.761905e-05

Joint ci ratio: 2.040581e-01	ci left: 7.870753e-05	ci right 9.681373e-05	k: 368	n:4210000
Cons ci ratio: 3.085938e-03	ci left: 2.766526e-01	ci right 2.775078e-01	k: 1166507	n:4210000
KS ci ratio: 2.440410e-01	ci left: 5.380945e-05	ci right 6.898259e-05	k: 257	n:4210000
LPA   4210000 perm   8330 sec   (505 perm/sec)   p_kst 6.104513e-05   p_cons 2.770800e-01   p_joint 8.741093e-05

Joint ci ratio: 2.037821e-01	ci left: 7.874589e-05	ci right 9.683336e-05	k: 369	n:4220000
Cons ci ratio: 3.082163e-03	ci left: 2.766683e-01	ci right 2.775226e-01	k: 1169342	n:4220000
KS ci ratio: 2.431006e-01	ci left: 5.412695e-05	ci right 6.932193e-05	k: 259	n:4220000
LPA   4220000 perm   8367 sec   (504 perm/sec)   p_kst 6.137441e-05   p_cons 2.770953e-01   p_joint 8.744076e-05

Joint ci ratio: 2.037822e-01	ci left: 7.855973e-05	ci right 9.660444e-05	k: 369	n:4230000
Cons ci ratio: 3.078448e-03	ci left: 2.766778e-01	ci right 2.775310e-01	k: 1172151	n:4230000
KS ci ratio: 2.426344e-01	ci left: 5.422101e-05	ci right 6.940881e-05	k: 260	n:4230000
LPA   4230000 perm   8404 sec   (503 perm/sec)   p_kst 6.146572e-05   p_cons 2.771043e-01   p_joint 8.723404e-05

Joint ci ratio: 2.037822e-01	ci left: 7.837444e-05	ci right 9.637660e-05	k: 369	n:4240000
Cons ci ratio: 3.074829e-03	ci left: 2.766766e-01	ci right 2.775289e-01	k: 1174915	n:4240000
KS ci ratio: 2.426344e-01	ci left: 5.409313e-05	ci right 6.924511e-05	k: 260	n:4240000
LPA   4240000 perm   8440 sec   (502 perm/sec)   p_kst 6.132075e-05   p_cons 2.771026e-01   p_joint 8.702830e-05

Joint ci ratio: 2.037822e-01	ci left: 7.819003e-05	ci right 9.614983e-05	k: 369	n:4250000
Cons ci ratio: 3.071310e-03	ci left: 2.766639e-01	ci right 2.775152e-01	k: 1177630	n:4250000
KS ci ratio: 2.421709e-01	ci left: 5.418686e-05	ci right 6.933174e-05	k: 261	n:4250000
LPA   4250000 perm   8477 sec   (501 perm/sec)   p_kst 6.141176e-05   p_cons 2.770894e-01   p_joint 8.682353e-05

Joint ci ratio: 2.035074e-01	ci left: 7.822926e-05	ci right 9.617082e-05	k: 370	n:4260000
Cons ci ratio: 3.067705e-03	ci left: 2.766642e-01	ci right 2.775145e-01	k: 1180400	n:4260000
KS ci ratio: 2.421709e-01	ci left: 5.405966e-05	ci right 6.916899e-05	k: 261	n:4260000
LPA   4260000 perm   8513 sec   (500 perm/sec)   p_kst 6.126761e-05   p_cons 2.770892e-01   p_joint 8.685446e-05

Joint ci ratio: 2.035074e-01	ci left: 7.804605e-05	ci right 9.594560e-05	k: 370	n:4270000
Cons ci ratio: 3.063954e-03	ci left: 2.766851e-01	ci right 2.775344e-01	k: 1183258	n:4270000
KS ci ratio: 2.421710e-01	ci left: 5.393305e-05	ci right 6.900700e-05	k: 261	n:4270000
LPA   4270000 perm   8550 sec   (499 perm/sec)   p_kst 6.112412e-05   p_cons 2.771096e-01   p_joint 8.665105e-05

Joint ci ratio: 2.035074e-01	ci left: 7.786370e-05	ci right 9.572143e-05	k: 370	n:4280000
Cons ci ratio: 3.060387e-03	ci left: 2.766837e-01	ci right 2.775320e-01	k: 1186021	n:4280000
KS ci ratio: 2.421710e-01	ci left: 5.380704e-05	ci right 6.884577e-05	k: 261	n:4280000
LPA   4280000 perm   8586 sec   (498 perm/sec)   p_kst 6.098131e-05   p_cons 2.771077e-01   p_joint 8.644860e-05

Joint ci ratio: 2.029611e-01	ci left: 7.812468e-05	ci right 9.598819e-05	k: 372	n:4290000
Cons ci ratio: 3.056843e-03	ci left: 2.766809e-01	ci right 2.775282e-01	k: 1188778	n:4290000
KS ci ratio: 2.417101e-01	ci left: 5.390059e-05	ci right 6.893250e-05	k: 262	n:4290000
LPA   4290000 perm   8624 sec   (497 perm/sec)   p_kst 6.107226e-05   p_cons 2.771044e-01   p_joint 8.671329e-05

Joint ci ratio: 2.029611e-01	ci left: 7.794299e-05	ci right 9.576497e-05	k: 372	n:4300000
Cons ci ratio: 3.053158e-03	ci left: 2.766984e-01	ci right 2.775447e-01	k: 1191622	n:4300000
KS ci ratio: 2.417101e-01	ci left: 5.377524e-05	ci right 6.877219e-05	k: 262	n:4300000
LPA   4300000 perm   8661 sec   (496 perm/sec)   p_kst 6.093023e-05   p_cons 2.771214e-01   p_joint 8.651163e-05

Joint ci ratio: 2.029611e-01	ci left: 7.776215e-05	ci right 9.554278e-05	k: 372	n:4310000
Cons ci ratio: 3.049499e-03	ci left: 2.767139e-01	ci right 2.775592e-01	k: 1194458	n:4310000
KS ci ratio: 2.417102e-01	ci left: 5.365047e-05	ci right 6.861263e-05	k: 262	n:4310000
LPA   4310000 perm   8698 sec   (495 perm/sec)   p_kst 6.078886e-05   p_cons 2.771364e-01   p_joint 8.631090e-05

Joint ci ratio: 2.026896e-01	ci left: 7.780187e-05	ci right 9.556483e-05	k: 373	n:4320000
Cons ci ratio: 3.046018e-03	ci left: 2.767078e-01	ci right 2.775522e-01	k: 1197201	n:4320000
KS ci ratio: 2.417102e-01	ci left: 5.352628e-05	ci right 6.845380e-05	k: 262	n:4320000
LPA   4320000 perm   8736 sec   (494 perm/sec)   p_kst 6.064815e-05   p_cons 2.771299e-01   p_joint 8.634259e-05

Joint ci ratio: 2.024191e-01	ci left: 7.784142e-05	ci right 9.558677e-05	k: 374	n:4330000
Cons ci ratio: 3.042630e-03	ci left: 2.766909e-01	ci right 2.775343e-01	k: 1199897	n:4330000
KS ci ratio: 2.417102e-01	ci left: 5.340266e-05	ci right 6.829571e-05	k: 262	n:4330000
LPA   4330000 perm   8773 sec   (494 perm/sec)   p_kst 6.050808e-05   p_cons 2.771125e-01   p_joint 8.637413e-05

Joint ci ratio: 2.051735e-01	ci left: 7.547548e-05	ci right 9.294498e-05	k: 364	n:4340000
Cons ci ratio: 3.039034e-03	ci left: 2.767031e-01	ci right 2.775455e-01	k: 1202719	n:4340000
KS ci ratio: 2.417102e-01	ci left: 5.327961e-05	ci right 6.813835e-05	k: 262	n:4340000
LPA   4340000 perm   8811 sec   (493 perm/sec)   p_kst 6.036866e-05   p_cons 2.771242e-01   p_joint 8.387097e-05

Joint ci ratio: 2.051735e-01	ci left: 7.530197e-05	ci right 9.273131e-05	k: 364	n:4350000
Cons ci ratio: 3.035468e-03	ci left: 2.767130e-01	ci right 2.775544e-01	k: 1205531	n:4350000
KS ci ratio: 2.412520e-01	ci left: 5.337311e-05	ci right 6.822547e-05	k: 263	n:4350000
LPA   4350000 perm   8848 sec   (492 perm/sec)   p_kst 6.045977e-05   p_cons 2.771336e-01   p_joint 8.367816e-05

Joint ci ratio: 2.048931e-01	ci left: 7.534684e-05	ci right 9.275974e-05	k: 365	n:4360000
Cons ci ratio: 3.031985e-03	ci left: 2.767134e-01	ci right 2.775539e-01	k: 1208302	n:4360000
KS ci ratio: 2.407963e-01	ci left: 5.346620e-05	ci right 6.831218e-05	k: 264	n:4360000
LPA   4360000 perm   8886 sec   (491 perm/sec)   p_kst 6.055046e-05   p_cons 2.771335e-01   p_joint 8.371560e-05

Joint ci ratio: 2.046137e-01	ci left: 7.539153e-05	ci right 9.278803e-05	k: 366	n:4370000
Cons ci ratio: 3.028551e-03	ci left: 2.767090e-01	ci right 2.775485e-01	k: 1211052	n:4370000
KS ci ratio: 2.407964e-01	ci left: 5.334385e-05	ci right 6.815586e-05	k: 264	n:4370000
LPA   4370000 perm   8923 sec   (490 perm/sec)   p_kst 6.041190e-05   p_cons 2.771286e-01   p_joint 8.375286e-05

Joint ci ratio: 2.043355e-01	ci left: 7.543602e-05	ci right 9.281616e-05	k: 367	n:4380000
Cons ci ratio: 3.025177e-03	ci left: 2.766982e-01	ci right 2.775368e-01	k: 1213774	n:4380000
KS ci ratio: 2.407964e-01	ci left: 5.322206e-05	ci right 6.800025e-05	k: 264	n:4380000
LPA   4380000 perm   8961 sec   (489 perm/sec)   p_kst 6.027397e-05   p_cons 2.771174e-01   p_joint 8.378995e-05

Joint ci ratio: 2.043355e-01	ci left: 7.526418e-05	ci right 9.260474e-05	k: 367	n:4390000
Cons ci ratio: 3.021713e-03	ci left: 2.767009e-01	ci right 2.775385e-01	k: 1216555	n:4390000
KS ci ratio: 2.407964e-01	ci left: 5.310082e-05	ci right 6.784535e-05	k: 264	n:4390000
LPA   4390000 perm   8999 sec   (488 perm/sec)   p_kst 6.013667e-05   p_cons 2.771196e-01   p_joint 8.359909e-05

Joint ci ratio: 2.040585e-01	ci left: 7.530878e-05	ci right 9.263315e-05	k: 368	n:4400000
Cons ci ratio: 3.018260e-03	ci left: 2.767036e-01	ci right 2.775403e-01	k: 1219336	n:4400000
KS ci ratio: 2.403433e-01	ci left: 5.319371e-05	ci right 6.793210e-05	k: 265	n:4400000
LPA   4400000 perm   9037 sec   (487 perm/sec)   p_kst 6.022727e-05   p_cons 2.771218e-01   p_joint 8.363636e-05

Joint ci ratio: 2.035077e-01	ci left: 7.556839e-05	ci right 9.289972e-05	k: 370	n:4410000
Cons ci ratio: 3.014941e-03	ci left: 2.766902e-01	ci right 2.775259e-01	k: 1222046	n:4410000
KS ci ratio: 2.398928e-01	ci left: 5.328621e-05	ci right 6.801844e-05	k: 266	n:4410000
LPA   4410000 perm   9075 sec   (486 perm/sec)   p_kst 6.031746e-05   p_cons 2.771079e-01   p_joint 8.390023e-05

Joint ci ratio: 2.032340e-01	ci left: 7.561214e-05	ci right 9.292729e-05	k: 371	n:4420000
Cons ci ratio: 3.011572e-03	ci left: 2.766848e-01	ci right 2.775195e-01	k: 1224791	n:4420000
KS ci ratio: 2.398928e-01	ci left: 5.316565e-05	ci right 6.786455e-05	k: 266	n:4420000
LPA   4420000 perm   9114 sec   (485 perm/sec)   p_kst 6.018100e-05   p_cons 2.771020e-01   p_joint 8.393665e-05

Joint ci ratio: 2.032340e-01	ci left: 7.544146e-05	ci right 9.271752e-05	k: 371	n:4430000
Cons ci ratio: 3.008255e-03	ci left: 2.766742e-01	ci right 2.775080e-01	k: 1227513	n:4430000
KS ci ratio: 2.398928e-01	ci left: 5.304564e-05	ci right 6.771136e-05	k: 266	n:4430000
LPA   4430000 perm   9152 sec   (484 perm/sec)   p_kst 6.004515e-05   p_cons 2.770910e-01   p_joint 8.374718e-05

Joint ci ratio: 2.032340e-01	ci left: 7.527155e-05	ci right 9.250870e-05	k: 371	n:4440000
Cons ci ratio: 3.004797e-03	ci left: 2.766837e-01	ci right 2.775166e-01	k: 1230324	n:4440000
KS ci ratio: 2.398929e-01	ci left: 5.292617e-05	ci right 6.755885e-05	k: 266	n:4440000
LPA   4440000 perm   9190 sec   (483 perm/sec)   p_kst 5.990991e-05   p_cons 2.771000e-01   p_joint 8.355856e-05

Joint ci ratio: 2.029614e-01	ci left: 7.531569e-05	ci right 9.253695e-05	k: 372	n:4450000
Cons ci ratio: 3.001535e-03	ci left: 2.766687e-01	ci right 2.775006e-01	k: 1233026	n:4450000
KS ci ratio: 2.398929e-01	ci left: 5.280723e-05	ci right 6.740704e-05	k: 266	n:4450000
LPA   4450000 perm   9229 sec   (482 perm/sec)   p_kst 5.977528e-05   p_cons 2.770845e-01   p_joint 8.359551e-05

Joint ci ratio: 2.029614e-01	ci left: 7.514682e-05	ci right 9.232947e-05	k: 372	n:4460000
Cons ci ratio: 2.998202e-03	ci left: 2.766647e-01	ci right 2.774957e-01	k: 1235777	n:4460000
KS ci ratio: 2.398929e-01	ci left: 5.268883e-05	ci right 6.725590e-05	k: 266	n:4460000
LPA   4460000 perm   9268 sec   (481 perm/sec)   p_kst 5.964126e-05   p_cons 2.770800e-01   p_joint 8.340807e-05

Joint ci ratio: 2.026899e-01	ci left: 7.519106e-05	ci right 9.235797e-05	k: 373	n:4470000
Cons ci ratio: 2.994976e-03	ci left: 2.766478e-01	ci right 2.774778e-01	k: 1238470	n:4470000
KS ci ratio: 2.398929e-01	ci left: 5.257096e-05	ci right 6.710544e-05	k: 266	n:4470000
LPA   4470000 perm   9306 sec   (480 perm/sec)   p_kst 5.950783e-05   p_cons 2.770626e-01   p_joint 8.344519e-05

Joint ci ratio: 2.021501e-01	ci left: 7.544702e-05	ci right 9.262084e-05	k: 375	n:4480000
Cons ci ratio: 2.991661e-03	ci left: 2.766443e-01	ci right 2.774734e-01	k: 1241223	n:4480000
KS ci ratio: 2.398929e-01	ci left: 5.245361e-05	ci right 6.695565e-05	k: 266	n:4480000
LPA   4480000 perm   9345 sec   (479 perm/sec)   p_kst 5.937500e-05   p_cons 2.770587e-01   p_joint 8.370536e-05

Joint ci ratio: 2.021501e-01	ci left: 7.527899e-05	ci right 9.241456e-05	k: 375	n:4490000
Cons ci ratio: 2.988201e-03	ci left: 2.766618e-01	ci right 2.774900e-01	k: 1244070	n:4490000
KS ci ratio: 2.398929e-01	ci left: 5.233679e-05	ci right 6.680653e-05	k: 266	n:4490000
LPA   4490000 perm   9384 sec   (478 perm/sec)   p_kst 5.924276e-05   p_cons 2.770757e-01   p_joint 8.351893e-05

Joint ci ratio: 2.016146e-01	ci left: 7.553368e-05	ci right 9.267607e-05	k: 377	n:4500000
Cons ci ratio: 2.984822e-03	ci left: 2.766699e-01	ci right 2.774971e-01	k: 1246875	n:4500000
KS ci ratio: 2.394450e-01	ci left: 5.242936e-05	ci right 6.689361e-05	k: 267	n:4500000
LPA   4500000 perm   9423 sec   (478 perm/sec)   p_kst 5.933333e-05   p_cons 2.770833e-01   p_joint 8.377778e-05

Joint ci ratio: 2.010833e-01	ci left: 7.578731e-05	ci right 9.293637e-05	k: 379	n:4510000
Cons ci ratio: 2.981602e-03	ci left: 2.766582e-01	ci right 2.774845e-01	k: 1249591	n:4510000
KS ci ratio: 2.389995e-01	ci left: 5.252155e-05	ci right 6.698028e-05	k: 268	n:4510000
LPA   4510000 perm   9462 sec   (477 perm/sec)   p_kst 5.942350e-05   p_cons 2.770712e-01   p_joint 8.403548e-05

Joint ci ratio: 2.008192e-01	ci left: 7.582974e-05	ci right 9.296311e-05	k: 380	n:4520000
Cons ci ratio: 2.978316e-03	ci left: 2.766567e-01	ci right 2.774821e-01	k: 1252353	n:4520000
KS ci ratio: 2.389995e-01	ci left: 5.240535e-05	ci right 6.683210e-05	k: 268	n:4520000
LPA   4520000 perm   9501 sec   (476 perm/sec)   p_kst 5.929204e-05   p_cons 2.770692e-01   p_joint 8.407080e-05

Joint ci ratio: 2.008192e-01	ci left: 7.566235e-05	ci right 9.275790e-05	k: 380	n:4530000
Cons ci ratio: 2.975044e-03	ci left: 2.766548e-01	ci right 2.774793e-01	k: 1255113	n:4530000
KS ci ratio: 2.389995e-01	ci left: 5.228967e-05	ci right 6.668457e-05	k: 268	n:4530000
LPA   4530000 perm   9540 sec   (475 perm/sec)   p_kst 5.916115e-05   p_cons 2.770669e-01   p_joint 8.388521e-05

Joint ci ratio: 2.002942e-01	ci left: 7.591410e-05	ci right 9.301620e-05	k: 382	n:4540000
Cons ci ratio: 2.971591e-03	ci left: 2.766789e-01	ci right 2.775025e-01	k: 1257991	n:4540000
KS ci ratio: 2.389995e-01	ci left: 5.217449e-05	ci right 6.653768e-05	k: 268	n:4540000
LPA   4540000 perm   9579 sec   (474 perm/sec)   p_kst 5.903084e-05   p_cons 2.770905e-01   p_joint 8.414097e-05

Joint ci ratio: 2.002942e-01	ci left: 7.574725e-05	ci right 9.281177e-05	k: 382	n:4550000
Cons ci ratio: 2.968423e-03	ci left: 2.766659e-01	ci right 2.774886e-01	k: 1260701	n:4550000
KS ci ratio: 2.389995e-01	ci left: 5.205982e-05	ci right 6.639145e-05	k: 268	n:4550000
LPA   4550000 perm   9618 sec   (473 perm/sec)   p_kst 5.890110e-05   p_cons 2.770771e-01   p_joint 8.395604e-05

Joint ci ratio: 2.000332e-01	ci left: 7.578945e-05	ci right 9.283851e-05	k: 383	n:4560000
Cons ci ratio: 2.965033e-03	ci left: 2.766844e-01	ci right 2.775062e-01	k: 1263554	n:4560000
KS ci ratio: 2.389995e-01	ci left: 5.194565e-05	ci right 6.624585e-05	k: 268	n:4560000
LPA   4560000 perm   9657 sec   (472 perm/sec)   p_kst 5.877193e-05   p_cons 2.770952e-01   p_joint 8.399123e-05

Joint ci ratio: 2.000332e-01	ci left: 7.562361e-05	ci right 9.263537e-05	k: 383	n:4570000
Cons ci ratio: 2.961767e-03	ci left: 2.766875e-01	ci right 2.775084e-01	k: 1266337	n:4570000
KS ci ratio: 2.389996e-01	ci left: 5.183199e-05	ci right 6.610090e-05	k: 268	n:4570000
LPA   4570000 perm   9697 sec   (471 perm/sec)   p_kst 5.864333e-05   p_cons 2.770978e-01   p_joint 8.380744e-05

Joint ci ratio: 1.997733e-01	ci left: 7.566590e-05	ci right 9.266236e-05	k: 384	n:4580000
Cons ci ratio: 2.958419e-03	ci left: 2.767032e-01	ci right 2.775233e-01	k: 1269178	n:4580000
KS ci ratio: 2.385565e-01	ci left: 5.192410e-05	ci right 6.618795e-05	k: 269	n:4580000
LPA   4580000 perm   9737 sec   (470 perm/sec)   p_kst 5.873362e-05   p_cons 2.771131e-01   p_joint 8.384279e-05

Joint ci ratio: 1.997733e-01	ci left: 7.550105e-05	ci right 9.246048e-05	k: 384	n:4590000
Cons ci ratio: 2.955155e-03	ci left: 2.767091e-01	ci right 2.775282e-01	k: 1271974	n:4590000
KS ci ratio: 2.385566e-01	ci left: 5.181097e-05	ci right 6.604375e-05	k: 269	n:4590000
LPA   4590000 perm   9776 sec   (470 perm/sec)   p_kst 5.860566e-05   p_cons 2.771185e-01   p_joint 8.366013e-05

Joint ci ratio: 1.997733e-01	ci left: 7.533692e-05	ci right 9.225948e-05	k: 384	n:4600000
Cons ci ratio: 2.951921e-03	ci left: 2.767123e-01	ci right 2.775306e-01	k: 1274758	n:4600000
KS ci ratio: 2.385566e-01	ci left: 5.169834e-05	ci right 6.590018e-05	k: 269	n:4600000
LPA   4600000 perm   9816 sec   (469 perm/sec)   p_kst 5.847826e-05   p_cons 2.771213e-01   p_joint 8.347826e-05

Joint ci ratio: 1.995144e-01	ci left: 7.537957e-05	ci right 9.228710e-05	k: 385	n:4610000
Cons ci ratio: 2.948620e-03	ci left: 2.767259e-01	ci right 2.775433e-01	k: 1277590	n:4610000
KS ci ratio: 2.381160e-01	ci left: 5.179016e-05	ci right 6.598707e-05	k: 270	n:4610000
LPA   4610000 perm   9856 sec   (468 perm/sec)   p_kst 5.856833e-05   p_cons 2.771345e-01   p_joint 8.351410e-05

Joint ci ratio: 1.992564e-01	ci left: 7.542206e-05	ci right 9.231459e-05	k: 386	n:4620000
Cons ci ratio: 2.945318e-03	ci left: 2.767412e-01	ci right 2.775577e-01	k: 1280430	n:4620000
KS ci ratio: 2.381160e-01	ci left: 5.167806e-05	ci right 6.584425e-05	k: 270	n:4620000
LPA   4620000 perm   9896 sec   (467 perm/sec)   p_kst 5.844156e-05   p_cons 2.771494e-01   p_joint 8.354978e-05

Joint ci ratio: 1.992564e-01	ci left: 7.525916e-05	ci right 9.211521e-05	k: 386	n:4630000
Cons ci ratio: 2.942154e-03	ci left: 2.767392e-01	ci right 2.775548e-01	k: 1283190	n:4630000
KS ci ratio: 2.381160e-01	ci left: 5.156645e-05	ci right 6.570203e-05	k: 270	n:4630000
LPA   4630000 perm   9936 sec   (466 perm/sec)   p_kst 5.831533e-05   p_cons 2.771469e-01   p_joint 8.336933e-05

Joint ci ratio: 1.992565e-01	ci left: 7.509696e-05	ci right 9.191668e-05	k: 386	n:4640000
Cons ci ratio: 2.939055e-03	ci left: 2.767296e-01	ci right 2.775444e-01	k: 1285915	n:4640000
KS ci ratio: 2.381161e-01	ci left: 5.145531e-05	ci right 6.556044e-05	k: 270	n:4640000
LPA   4640000 perm   9976 sec   (465 perm/sec)   p_kst 5.818966e-05   p_cons 2.771369e-01   p_joint 8.318966e-05

Joint ci ratio: 1.989995e-01	ci left: 7.513980e-05	ci right 9.194477e-05	k: 387	n:4650000
Cons ci ratio: 2.935861e-03	ci left: 2.767345e-01	ci right 2.775484e-01	k: 1288707	n:4650000
KS ci ratio: 2.372422e-01	ci left: 5.174915e-05	ci right 6.587512e-05	k: 272	n:4650000
LPA   4650000 perm   10015 sec   (464 perm/sec)   p_kst 5.849462e-05   p_cons 2.771413e-01   p_joint 8.322581e-05

Joint ci ratio: 1.989995e-01	ci left: 7.497855e-05	ci right 9.174747e-05	k: 387	n:4660000
Cons ci ratio: 2.932763e-03	ci left: 2.767276e-01	ci right 2.775405e-01	k: 1291444	n:4660000
KS ci ratio: 2.372422e-01	ci left: 5.163810e-05	ci right 6.573375e-05	k: 272	n:4660000
LPA   4660000 perm   10055 sec   (463 perm/sec)   p_kst 5.836910e-05   p_cons 2.771339e-01   p_joint 8.304721e-05

Joint ci ratio: 1.984886e-01	ci left: 7.522496e-05	ci right 9.200056e-05	k: 389	n:4670000
Cons ci ratio: 2.929661e-03	ci left: 2.767226e-01	ci right 2.775347e-01	k: 1294190	n:4670000
KS ci ratio: 2.363779e-01	ci left: 5.193039e-05	ci right 6.604662e-05	k: 274	n:4670000
LPA   4670000 perm   10095 sec   (463 perm/sec)   p_kst 5.867238e-05   p_cons 2.771285e-01   p_joint 8.329764e-05

Joint ci ratio: 1.984886e-01	ci left: 7.506422e-05	ci right 9.180397e-05	k: 389	n:4680000
Cons ci ratio: 2.926508e-03	ci left: 2.767259e-01	ci right 2.775372e-01	k: 1296975	n:4680000
KS ci ratio: 2.363779e-01	ci left: 5.181942e-05	ci right 6.590550e-05	k: 274	n:4680000
LPA   4680000 perm   10135 sec   (462 perm/sec)   p_kst 5.854701e-05   p_cons 2.771314e-01   p_joint 8.311966e-05

Joint ci ratio: 1.984886e-01	ci left: 7.490417e-05	ci right 9.160823e-05	k: 389	n:4690000
Cons ci ratio: 2.923328e-03	ci left: 2.767344e-01	ci right 2.775448e-01	k: 1299784	n:4690000
KS ci ratio: 2.363779e-01	ci left: 5.170893e-05	ci right 6.576498e-05	k: 274	n:4690000
LPA   4690000 perm   10176 sec   (461 perm/sec)   p_kst 5.842217e-05   p_cons 2.771394e-01   p_joint 8.294243e-05

Joint ci ratio: 1.982347e-01	ci left: 7.494699e-05	ci right 9.163664e-05	k: 390	n:4700000
Cons ci ratio: 2.920221e-03	ci left: 2.767341e-01	ci right 2.775436e-01	k: 1302552	n:4700000
KS ci ratio: 2.363780e-01	ci left: 5.159891e-05	ci right 6.562505e-05	k: 274	n:4700000
LPA   4700000 perm   10216 sec   (460 perm/sec)   p_kst 5.829787e-05   p_cons 2.771387e-01   p_joint 8.297872e-05

Joint ci ratio: 1.979816e-01	ci left: 7.498965e-05	ci right 9.166491e-05	k: 391	n:4710000
Cons ci ratio: 2.917069e-03	ci left: 2.767415e-01	ci right 2.775501e-01	k: 1305356	n:4710000
KS ci ratio: 2.363780e-01	ci left: 5.148936e-05	ci right 6.548572e-05	k: 274	n:4710000
LPA   4710000 perm   10257 sec   (459 perm/sec)   p_kst 5.817410e-05   p_cons 2.771456e-01   p_joint 8.301486e-05

Joint ci ratio: 1.997735e-01	ci left: 7.342157e-05	ci right 8.991391e-05	k: 384	n:4720000
Cons ci ratio: 2.913878e-03	ci left: 2.767556e-01	ci right 2.775634e-01	k: 1308192	n:4720000
KS ci ratio: 2.355230e-01	ci left: 5.177896e-05	ci right 6.579571e-05	k: 276	n:4720000
LPA   4720000 perm   10297 sec   (458 perm/sec)   p_kst 5.847458e-05   p_cons 2.771593e-01   p_joint 8.135593e-05

Joint ci ratio: 1.995146e-01	ci left: 7.346719e-05	ci right 8.994579e-05	k: 385	n:4730000
Cons ci ratio: 2.910923e-03	ci left: 2.767385e-01	ci right 2.775455e-01	k: 1310881	n:4730000
KS ci ratio: 2.355231e-01	ci left: 5.166949e-05	ci right 6.565661e-05	k: 276	n:4730000
LPA   4730000 perm   10339 sec   (457 perm/sec)   p_kst 5.835095e-05   p_cons 2.771419e-01   p_joint 8.139535e-05

Joint ci ratio: 1.995146e-01	ci left: 7.331219e-05	ci right 8.975603e-05	k: 385	n:4740000
Cons ci ratio: 2.907743e-03	ci left: 2.767538e-01	ci right 2.775599e-01	k: 1313723	n:4740000
KS ci ratio: 2.346773e-01	ci left: 5.195757e-05	ci right 6.596484e-05	k: 278	n:4740000
LPA   4740000 perm   10380 sec   (457 perm/sec)   p_kst 5.864979e-05   p_cons 2.771568e-01   p_joint 8.122363e-05

Joint ci ratio: 1.995146e-01	ci left: 7.315785e-05	ci right 8.956707e-05	k: 385	n:4750000
Cons ci ratio: 2.904684e-03	ci left: 2.767537e-01	ci right 2.775590e-01	k: 1316492	n:4750000
KS ci ratio: 2.346773e-01	ci left: 5.184819e-05	ci right 6.582596e-05	k: 278	n:4750000
LPA   4750000 perm   10421 sec   (456 perm/sec)   p_kst 5.852632e-05   p_cons 2.771562e-01   p_joint 8.105263e-05

Joint ci ratio: 1.995146e-01	ci left: 7.300416e-05	ci right 8.937891e-05	k: 385	n:4760000
Cons ci ratio: 2.901599e-03	ci left: 2.767586e-01	ci right 2.775631e-01	k: 1319285	n:4760000
KS ci ratio: 2.346774e-01	ci left: 5.173926e-05	ci right 6.568768e-05	k: 278	n:4760000
LPA   4760000 perm   10462 sec   (455 perm/sec)   p_kst 5.840336e-05   p_cons 2.771607e-01   p_joint 8.088235e-05

Joint ci ratio: 1.992567e-01	ci left: 7.305029e-05	ci right 8.941163e-05	k: 386	n:4770000
Cons ci ratio: 2.898572e-03	ci left: 2.767568e-01	ci right 2.775604e-01	k: 1322046	n:4770000
KS ci ratio: 2.346774e-01	ci left: 5.163079e-05	ci right 6.554997e-05	k: 278	n:4770000
LPA   4770000 perm   10502 sec   (454 perm/sec)   p_kst 5.828092e-05   p_cons 2.771585e-01   p_joint 8.092243e-05

Joint ci ratio: 1.992567e-01	ci left: 7.289746e-05	ci right 8.922457e-05	k: 386	n:4780000
Cons ci ratio: 2.895612e-03	ci left: 2.767471e-01	ci right 2.775498e-01	k: 1324769	n:4780000
KS ci ratio: 2.346774e-01	ci left: 5.152278e-05	ci right 6.541283e-05	k: 278	n:4780000
LPA   4780000 perm   10543 sec   (453 perm/sec)   p_kst 5.815900e-05   p_cons 2.771483e-01   p_joint 8.075314e-05

Joint ci ratio: 1.989998e-01	ci left: 7.294364e-05	ci right 8.925746e-05	k: 387	n:4790000
Cons ci ratio: 2.892664e-03	ci left: 2.767370e-01	ci right 2.775389e-01	k: 1327490	n:4790000
KS ci ratio: 2.346774e-01	ci left: 5.141521e-05	ci right 6.527627e-05	k: 278	n:4790000
LPA   4790000 perm   10584 sec   (453 perm/sec)   p_kst 5.803758e-05   p_cons 2.771378e-01   p_joint 8.079332e-05

Joint ci ratio: 1.987438e-01	ci left: 7.298963e-05	ci right 8.929020e-05	k: 388	n:4800000
Cons ci ratio: 2.889674e-03	ci left: 2.767340e-01	ci right 2.775350e-01	k: 1330245	n:4800000
KS ci ratio: 2.342580e-01	ci left: 5.150419e-05	ci right 6.536083e-05	k: 279	n:4800000
LPA   4800000 perm   10625 sec   (452 perm/sec)   p_kst 5.812500e-05   p_cons 2.771344e-01   p_joint 8.083333e-05

Joint ci ratio: 1.984888e-01	ci left: 7.303545e-05	ci right 8.932280e-05	k: 389	n:4810000
Cons ci ratio: 2.886721e-03	ci left: 2.767271e-01	ci right 2.775273e-01	k: 1332981	n:4810000
KS ci ratio: 2.338407e-01	ci left: 5.159283e-05	ci right 6.544501e-05	k: 280	n:4810000
LPA   4810000 perm   10664 sec   (451 perm/sec)   p_kst 5.821206e-05   p_cons 2.771270e-01   p_joint 8.087318e-05

Joint ci ratio: 1.982349e-01	ci left: 7.308109e-05	ci right 8.935524e-05	k: 390	n:4820000
Cons ci ratio: 2.883714e-03	ci left: 2.767291e-01	ci right 2.775284e-01	k: 1335760	n:4820000
KS ci ratio: 2.334258e-01	ci left: 5.168112e-05	ci right 6.552882e-05	k: 281	n:4820000
LPA   4820000 perm   10704 sec   (450 perm/sec)   p_kst 5.829876e-05   p_cons 2.771286e-01   p_joint 8.091286e-05

Joint ci ratio: 1.982349e-01	ci left: 7.292978e-05	ci right 8.917024e-05	k: 390	n:4830000
Cons ci ratio: 2.880684e-03	ci left: 2.767354e-01	ci right 2.775340e-01	k: 1338560	n:4830000
KS ci ratio: 2.330130e-01	ci left: 5.176906e-05	ci right 6.561227e-05	k: 282	n:4830000
LPA   4830000 perm   10744 sec   (450 perm/sec)   p_kst 5.838509e-05   p_cons 2.771346e-01   p_joint 8.074534e-05

Joint ci ratio: 1.979819e-01	ci left: 7.297546e-05	ci right 8.920285e-05	k: 391	n:4840000
Cons ci ratio: 2.877692e-03	ci left: 2.767379e-01	ci right 2.775356e-01	k: 1341341	n:4840000
KS ci ratio: 2.330130e-01	ci left: 5.166210e-05	ci right 6.547670e-05	k: 282	n:4840000
LPA   4840000 perm   10785 sec   (449 perm/sec)   p_kst 5.826446e-05   p_cons 2.771366e-01   p_joint 8.078512e-05

Joint ci ratio: 1.977298e-01	ci left: 7.302097e-05	ci right 8.923531e-05	k: 392	n:4850000
Cons ci ratio: 2.874725e-03	ci left: 2.767382e-01	ci right 2.775351e-01	k: 1344112	n:4850000
KS ci ratio: 2.326024e-01	ci left: 5.174974e-05	ci right 6.555989e-05	k: 283	n:4850000
LPA   4850000 perm   10826 sec   (448 perm/sec)   p_kst 5.835052e-05   p_cons 2.771365e-01   p_joint 8.082474e-05

Joint ci ratio: 1.974787e-01	ci left: 7.306630e-05	ci right 8.926763e-05	k: 393	n:4860000
Cons ci ratio: 2.871774e-03	ci left: 2.767375e-01	ci right 2.775336e-01	k: 1346878	n:4860000
KS ci ratio: 2.326024e-01	ci left: 5.164326e-05	ci right 6.542499e-05	k: 283	n:4860000
LPA   4860000 perm   10867 sec   (447 perm/sec)   p_kst 5.823045e-05   p_cons 2.771354e-01   p_joint 8.086420e-05

Joint ci ratio: 1.972286e-01	ci left: 7.311146e-05	ci right 8.929980e-05	k: 394	n:4870000
Cons ci ratio: 2.868827e-03	ci left: 2.767374e-01	ci right 2.775327e-01	k: 1349647	n:4870000
KS ci ratio: 2.326024e-01	ci left: 5.153721e-05	ci right 6.529065e-05	k: 283	n:4870000
LPA   4870000 perm   10909 sec   (446 perm/sec)   p_kst 5.811088e-05   p_cons 2.771349e-01   p_joint 8.090349e-05

Joint ci ratio: 1.972286e-01	ci left: 7.296164e-05	ci right 8.911681e-05	k: 394	n:4880000
Cons ci ratio: 2.865953e-03	ci left: 2.767285e-01	ci right 2.775230e-01	k: 1352373	n:4880000
KS ci ratio: 2.321940e-01	ci left: 5.162459e-05	ci right 6.537369e-05	k: 284	n:4880000
LPA   4880000 perm   10951 sec   (446 perm/sec)   p_kst 5.819672e-05   p_cons 2.771256e-01   p_joint 8.073770e-05

Joint ci ratio: 1.972286e-01	ci left: 7.281244e-05	ci right 8.893457e-05	k: 394	n:4890000
Cons ci ratio: 2.863069e-03	ci left: 2.767221e-01	ci right 2.775157e-01	k: 1355111	n:4890000
KS ci ratio: 2.321940e-01	ci left: 5.151902e-05	ci right 6.524000e-05	k: 284	n:4890000
LPA   4890000 perm   10994 sec   (445 perm/sec)   p_kst 5.807771e-05   p_cons 2.771188e-01   p_joint 8.057260e-05

Joint ci ratio: 1.972286e-01	ci left: 7.266384e-05	ci right 8.875307e-05	k: 394	n:4900000
Cons ci ratio: 2.860174e-03	ci left: 2.767186e-01	ci right 2.775114e-01	k: 1357863	n:4900000
KS ci ratio: 2.321940e-01	ci left: 5.141388e-05	ci right 6.510686e-05	k: 284	n:4900000
LPA   4900000 perm   11036 sec   (444 perm/sec)   p_kst 5.795918e-05   p_cons 2.771149e-01   p_joint 8.040816e-05

Joint ci ratio: 1.972287e-01	ci left: 7.251585e-05	ci right 8.857231e-05	k: 394	n:4910000
Cons ci ratio: 2.857199e-03	ci left: 2.767276e-01	ci right 2.775195e-01	k: 1360676	n:4910000
KS ci ratio: 2.321940e-01	ci left: 5.130917e-05	ci right 6.497426e-05	k: 284	n:4910000
LPA   4910000 perm   11078 sec   (443 perm/sec)   p_kst 5.784114e-05   p_cons 2.771234e-01   p_joint 8.024440e-05

Joint ci ratio: 1.969795e-01	ci left: 7.256168e-05	ci right 8.860555e-05	k: 395	n:4920000
Cons ci ratio: 2.854277e-03	ci left: 2.767304e-01	ci right 2.775215e-01	k: 1363459	n:4920000
KS ci ratio: 2.321940e-01	ci left: 5.120488e-05	ci right 6.484219e-05	k: 284	n:4920000
LPA   4920000 perm   11120 sec   (442 perm/sec)   p_kst 5.772358e-05   p_cons 2.771258e-01   p_joint 8.028455e-05

Joint ci ratio: 1.967312e-01	ci left: 7.260734e-05	ci right 8.863865e-05	k: 396	n:4930000
Cons ci ratio: 2.851373e-03	ci left: 2.767319e-01	ci right 2.775223e-01	k: 1366236	n:4930000
KS ci ratio: 2.317877e-01	ci left: 5.129207e-05	ci right 6.492528e-05	k: 285	n:4930000
LPA   4930000 perm   11162 sec   (442 perm/sec)   p_kst 5.780933e-05   p_cons 2.771270e-01   p_joint 8.032454e-05

Joint ci ratio: 1.967312e-01	ci left: 7.246036e-05	ci right 8.845922e-05	k: 396	n:4940000
Cons ci ratio: 2.848440e-03	ci left: 2.767387e-01	ci right 2.775283e-01	k: 1369039	n:4940000
KS ci ratio: 2.317877e-01	ci left: 5.118824e-05	ci right 6.479385e-05	k: 285	n:4940000
LPA   4940000 perm   11205 sec   (441 perm/sec)   p_kst 5.769231e-05   p_cons 2.771334e-01   p_joint 8.016194e-05

Joint ci ratio: 1.964839e-01	ci left: 7.250605e-05	ci right 8.849247e-05	k: 397	n:4950000
Cons ci ratio: 2.845534e-03	ci left: 2.767429e-01	ci right 2.775317e-01	k: 1371829	n:4950000
KS ci ratio: 2.317877e-01	ci left: 5.108483e-05	ci right 6.466295e-05	k: 285	n:4950000
LPA   4950000 perm   11247 sec   (440 perm/sec)   p_kst 5.757576e-05   p_cons 2.771372e-01   p_joint 8.020202e-05

Joint ci ratio: 1.964839e-01	ci left: 7.235987e-05	ci right 8.831405e-05	k: 397	n:4960000
Cons ci ratio: 2.842676e-03	ci left: 2.767416e-01	ci right 2.775296e-01	k: 1374592	n:4960000
KS ci ratio: 2.313836e-01	ci left: 5.117175e-05	ci right 6.474587e-05	k: 286	n:4960000
LPA   4960000 perm   11290 sec   (439 perm/sec)   p_kst 5.766129e-05   p_cons 2.771355e-01   p_joint 8.004032e-05

Joint ci ratio: 1.964840e-01	ci left: 7.221427e-05	ci right 8.813636e-05	k: 397	n:4970000
Cons ci ratio: 2.839857e-03	ci left: 2.767361e-01	ci right 2.775233e-01	k: 1377334	n:4970000
KS ci ratio: 2.313836e-01	ci left: 5.106879e-05	ci right 6.461560e-05	k: 286	n:4970000
LPA   4970000 perm   11333 sec   (439 perm/sec)   p_kst 5.754527e-05   p_cons 2.771296e-01   p_joint 7.987928e-05

Joint ci ratio: 1.964840e-01	ci left: 7.206926e-05	ci right 8.795938e-05	k: 397	n:4980000
Cons ci ratio: 2.837006e-03	ci left: 2.767362e-01	ci right 2.775226e-01	k: 1380104	n:4980000
KS ci ratio: 2.309815e-01	ci left: 5.115541e-05	ci right 6.469826e-05	k: 287	n:4980000
LPA   4980000 perm   11376 sec   (438 perm/sec)   p_kst 5.763052e-05   p_cons 2.771293e-01   p_joint 7.971888e-05

Joint ci ratio: 1.992571e-01	ci left: 6.982962e-05	ci right 8.546965e-05	k: 386	n:4990000
Cons ci ratio: 2.834117e-03	ci left: 2.767430e-01	ci right 2.775286e-01	k: 1382907	n:4990000
KS ci ratio: 2.305815e-01	ci left: 5.124171e-05	ci right 6.478057e-05	k: 288	n:4990000
LPA   4990000 perm   11419 sec   (437 perm/sec)   p_kst 5.771543e-05   p_cons 2.771357e-01   p_joint 7.735471e-05

Joint ci ratio: 1.990001e-01	ci left: 6.987999e-05	ci right 8.550867e-05	k: 387	n:5000000
Cons ci ratio: 2.831297e-03	ci left: 2.767411e-01	ci right 2.775259e-01	k: 1385667	n:5000000
KS ci ratio: 2.301836e-01	ci left: 5.132769e-05	ci right 6.486253e-05	k: 289	n:5000000
LPA   5000000 perm   11462 sec   (436 perm/sec)   p_kst 5.780000e-05   p_cons 2.771334e-01   p_joint 7.740000e-05

Outputting figure to mutsig2_images.part000000000098/LPA.26_6279_5000000_5.78e-05_0.27713_7.74e-05.png
                gene_name: LPA
               theta_stop: 0.23 
                    nperm: 5000000 
                     p_ks: 5.78e-05 
        ci_ks_bounds_left: 5.13e-05 
       ci_ks_bounds_right: 6.49e-05 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 7.74e-05 
     ci_joint_bounds_left: 6.99e-05 
    ci_joint_bounds_right: 8.55e-05 

Current progress: 7 percent done.
LPHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
Cons ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
LPHN2   10000 perm   3 sec   (3862 perm/sec)   p_kst 8.278000e-01   p_cons 2.343000e-01   p_joint 6.051000e-01

Outputting figure to mutsig2_images.part000000000098/LPHN2.24_4288_10000_0.8278_0.2343_0.6051.png
                gene_name: LPHN2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 8 percent done.
LPPR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
LPPR4   10000 perm   2 sec   (4772 perm/sec)   p_kst 1.530000e-01   p_cons 4.260000e-01   p_joint 2.385000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR4.23_2320_10000_0.153_0.426_0.2385.png
                gene_name: LPPR4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 10 percent done.
LRFN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
LRFN5   10000 perm   2 sec   (4582 perm/sec)   p_kst 9.596000e-01   p_cons 1.609000e-01   p_joint 5.154000e-01

Outputting figure to mutsig2_images.part000000000098/LRFN5.21_2176_10000_0.9596_0.1609_0.5154.png
                gene_name: LRFN5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
LRP1
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
LRP1   10000 perm   4 sec   (2731 perm/sec)   p_kst 4.539000e-01   p_cons 2.194000e-01   p_joint 4.968000e-01

Outputting figure to mutsig2_images.part000000000098/LRP1.21_13991_10000_0.4539_0.2194_0.4968.png
                gene_name: LRP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 14 percent done.
LRFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
Cons ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
LRFN2   10000 perm   2 sec   (4601 perm/sec)   p_kst 3.789000e-01   p_cons 3.400000e-02   p_joint 1.275000e-01

Joint ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
Cons ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
KS ci ratio: 3.366373e-02	ci left: 3.971888e-01	ci right 4.108391e-01	k: 8080	n:20000
LRFN2   20000 perm   5 sec   (4204 perm/sec)   p_kst 4.040000e-01   p_cons 3.830000e-02   p_joint 9.450000e-02

Joint ci ratio: 7.173131e-02	ci left: 8.727661e-02	ci right 9.380293e-02	k: 2715	n:30000
Cons ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
KS ci ratio: 2.746438e-02	ci left: 3.988393e-01	ci right 4.099793e-01	k: 12132	n:30000
LRFN2   30000 perm   7 sec   (4046 perm/sec)   p_kst 4.044000e-01   p_cons 3.940000e-02   p_joint 9.050000e-02

Joint ci ratio: 6.989579e-02	ci left: 7.034629e-02	ci right 7.546592e-02	k: 2915	n:40000
Cons ci ratio: 1.038414e-01	ci left: 3.261093e-02	ci right 3.620707e-02	k: 1375	n:40000
KS ci ratio: 2.380746e-02	ci left: 3.991360e-01	ci right 4.087780e-01	k: 16158	n:40000
LRFN2   40000 perm   10 sec   (3956 perm/sec)   p_kst 4.039500e-01   p_cons 3.437500e-02   p_joint 7.287500e-02

Joint ci ratio: 5.809437e-02	ci left: 8.103024e-02	ci right 8.589825e-02	k: 4172	n:50000
Cons ci ratio: 9.304697e-02	ci left: 3.268272e-02	ci right 3.589164e-02	k: 1713	n:50000
KS ci ratio: 2.134074e-02	ci left: 3.985966e-01	ci right 4.072147e-01	k: 20145	n:50000
LRFN2   50000 perm   13 sec   (3871 perm/sec)   p_kst 4.029000e-01   p_cons 3.426000e-02   p_joint 8.344000e-02

Outputting figure to mutsig2_images.part000000000098/LRFN2.13_2378_50000_0.4029_0.03426_0.08344.png
                gene_name: LRFN2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 15 percent done.
LRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
KS ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
LRP4   10000 perm   3 sec   (3876 perm/sec)   p_kst 9.605000e-01   p_cons 4.833000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRP4.13_5870_10000_0.9605_0.4833_1.png
                gene_name: LRP4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
LRBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
Cons ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
KS ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
LRBA   10000 perm   3 sec   (3679 perm/sec)   p_kst 2.693000e-01   p_cons 3.486000e-01   p_joint 3.517000e-01

Outputting figure to mutsig2_images.part000000000098/LRBA.11_8820_10000_0.2693_0.3486_0.3517.png
                gene_name: LRBA
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 19 percent done.
LRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
KS ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
LRP12   10000 perm   2 sec   (4711 perm/sec)   p_kst 3.188000e-01   p_cons 4.370000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000098/LRP12.10_2608_10000_0.3188_0.437_0.4799.png
                gene_name: LRP12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 20 percent done.
LRP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
KS ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
LRP6   10000 perm   2 sec   (4356 perm/sec)   p_kst 2.082000e-01   p_cons 4.650000e-02   p_joint 1.670000e-01

Joint ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
Cons ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
KS ci ratio: 5.258266e-02	ci left: 2.116999e-01	ci right 2.231824e-01	k: 4348	n:20000
LRP6   20000 perm   5 sec   (3943 perm/sec)   p_kst 2.174000e-01   p_cons 4.610000e-02   p_joint 7.925000e-02

Joint ci ratio: 8.818052e-02	ci left: 5.906845e-02	ci right 6.455012e-02	k: 1853	n:30000
Cons ci ratio: 9.268685e-02	ci left: 5.365288e-02	ci right 5.890013e-02	k: 1687	n:30000
KS ci ratio: 4.321105e-02	ci left: 2.105938e-01	ci right 2.199281e-01	k: 6457	n:30000
LRP6   30000 perm   8 sec   (3794 perm/sec)   p_kst 2.152333e-01   p_cons 5.623333e-02   p_joint 6.176667e-02

Outputting figure to mutsig2_images.part000000000098/LRP6.10_4934_30000_0.21523_0.056233_0.061767.png
                gene_name: LRP6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 22 percent done.
LOC649330
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
Cons ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
KS ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
LOC649330   10000 perm   2 sec   (5203 perm/sec)   p_kst 8.007000e-01   p_cons 3.741000e-01   p_joint 8.398000e-01

Outputting figure to mutsig2_images.part000000000098/LOC649330.8_886_10000_0.8007_0.3741_0.8398.png
                gene_name: LOC649330
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 24 percent done.
LONP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
Cons ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
KS ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
LONP2   10000 perm   2 sec   (4764 perm/sec)   p_kst 5.610000e-02   p_cons 1.489000e-01   p_joint 1.214000e-01

Joint ci ratio: 1.038504e-01	ci left: 6.303638e-02	ci right 6.999029e-02	k: 1329	n:20000
Cons ci ratio: 6.595650e-02	ci left: 1.451268e-01	ci right 1.550752e-01	k: 3001	n:20000
KS ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
LONP2   20000 perm   5 sec   (4322 perm/sec)   p_kst 5.490000e-02   p_cons 1.500500e-01   p_joint 6.645000e-02

Joint ci ratio: 9.013996e-02	ci left: 5.662084e-02	ci right 6.199823e-02	k: 1778	n:30000
Cons ci ratio: 5.064903e-02	ci left: 1.622013e-01	ci right 1.706634e-01	k: 4992	n:30000
KS ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
LONP2   30000 perm   7 sec   (4127 perm/sec)   p_kst 5.136667e-02   p_cons 1.664000e-01   p_joint 5.926667e-02

Outputting figure to mutsig2_images.part000000000098/LONP2.8_2619_30000_0.051367_0.1664_0.059267.png
                gene_name: LONP2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 25 percent done.
LONRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
Cons ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
KS ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
LONRF3   10000 perm   2 sec   (5010 perm/sec)   p_kst 9.754000e-01   p_cons 1.031000e-01   p_joint 4.156000e-01

Joint ci ratio: 2.953593e-02	ci left: 4.613145e-01	ci right 4.751947e-01	k: 9365	n:20000
Cons ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
KS ci ratio: 4.478763e-03	ci left: 9.723242e-01	ci right 9.767363e-01	k: 19492	n:20000
LONRF3   20000 perm   4 sec   (4546 perm/sec)   p_kst 9.746000e-01   p_cons 1.069000e-01   p_joint 4.682500e-01

Outputting figure to mutsig2_images.part000000000098/LONRF3.8_2324_20000_0.9746_0.1069_0.46825.png
                gene_name: LONRF3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 27 percent done.
LPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
Cons ci ratio: 1.775478e-02	ci left: 8.222885e-01	ci right 8.371189e-01	k: 8298	n:10000
KS ci ratio: 4.292085e-02	ci left: 4.449049e-01	ci right 4.645215e-01	k: 4547	n:10000
LPP   10000 perm   2 sec   (4900 perm/sec)   p_kst 4.547000e-01   p_cons 8.298000e-01   p_joint 6.264000e-01

Outputting figure to mutsig2_images.part000000000098/LPP.8_1875_10000_0.4547_0.8298_0.6264.png
                gene_name: LPP
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 29 percent done.
LRIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
LRIT2   10000 perm   2 sec   (5529 perm/sec)   p_kst 5.640000e-01   p_cons 5.443000e-01   p_joint 8.290000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT2.8_1665_10000_0.564_0.5443_0.829.png
                gene_name: LRIT2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 31 percent done.
LONP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
KS ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
LONP1   10000 perm   2 sec   (5105 perm/sec)   p_kst 8.726000e-01   p_cons 6.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LONP1.7_2952_10000_0.8726_0.698_1.png
                gene_name: LONP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
LRGUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
Cons ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
KS ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
LRGUK   10000 perm   2 sec   (4785 perm/sec)   p_kst 6.186000e-01   p_cons 5.476000e-01   p_joint 6.064000e-01

Outputting figure to mutsig2_images.part000000000098/LRGUK.7_2558_10000_0.6186_0.5476_0.6064.png
                gene_name: LRGUK
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 34 percent done.
LRRC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
LRRC15   10000 perm   2 sec   (4960 perm/sec)   p_kst 7.715000e-01   p_cons 1.890000e-01   p_joint 4.898000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC15.7_1772_10000_0.7715_0.189_0.4898.png
                gene_name: LRRC15
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
LPAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
Cons ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
KS ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
LPAR3   10000 perm   2 sec   (5625 perm/sec)   p_kst 2.646000e-01   p_cons 1.161000e-01   p_joint 1.651000e-01

Joint ci ratio: 6.737537e-02	ci left: 1.398513e-01	ci right 1.496522e-01	k: 2894	n:20000
Cons ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
KS ci ratio: 4.606783e-02	ci left: 2.596374e-01	ci right 2.719307e-01	k: 5315	n:20000
LPAR3   20000 perm   4 sec   (5034 perm/sec)   p_kst 2.657500e-01   p_cons 1.180500e-01   p_joint 1.447000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR3.6_1070_20000_0.26575_0.11805_0.1447.png
                gene_name: LPAR3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 37 percent done.
LPCAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
Cons ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
KS ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
LPCAT1   10000 perm   2 sec   (5340 perm/sec)   p_kst 3.394000e-01   p_cons 1.726000e-01   p_joint 3.501000e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT1.6_1661_10000_0.3394_0.1726_0.3501.png
                gene_name: LPCAT1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 39 percent done.
LRCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
Cons ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
LRCH1   10000 perm   2 sec   (4990 perm/sec)   p_kst 4.177000e-01   p_cons 9.268000e-01   p_joint 7.624000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH1.6_2487_10000_0.4177_0.9268_0.7624.png
                gene_name: LRCH1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 41 percent done.
LRIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
Cons ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
KS ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
LRIG1   10000 perm   2 sec   (4717 perm/sec)   p_kst 2.876000e-01   p_cons 2.284000e-01   p_joint 3.688000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG1.6_3358_10000_0.2876_0.2284_0.3688.png
                gene_name: LRIG1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 42 percent done.
LRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 8.876654e-03	ci left: 9.468981e-01	ci right 9.554367e-01	k: 9513	n:10000
LRIT1   10000 perm   2 sec   (5387 perm/sec)   p_kst 9.513000e-01   p_cons 4.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRIT1.6_1888_10000_0.9513_0.4535_1.png
                gene_name: LRIT1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
LRPPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
Cons ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
KS ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
LRPPRC   10000 perm   2 sec   (4450 perm/sec)   p_kst 5.504000e-01   p_cons 7.130000e-02   p_joint 2.724000e-01

Joint ci ratio: 4.444838e-02	ci left: 2.737350e-01	ci right 2.862290e-01	k: 5599	n:20000
Cons ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
KS ci ratio: 2.360063e-02	ci left: 5.728229e-01	ci right 5.865539e-01	k: 11594	n:20000
LRPPRC   20000 perm   5 sec   (4044 perm/sec)   p_kst 5.797000e-01   p_cons 7.225000e-02   p_joint 2.799500e-01

Outputting figure to mutsig2_images.part000000000098/LRPPRC.6_4337_20000_0.5797_0.07225_0.27995.png
                gene_name: LRPPRC
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 46 percent done.
LOXL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.754076e-02	ci left: 8.257465e-01	ci right 8.404589e-01	k: 8332	n:10000
Cons ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KS ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
LOXL4   10000 perm   2 sec   (5679 perm/sec)   p_kst 6.732000e-01   p_cons 8.294000e-01   p_joint 8.332000e-01

Outputting figure to mutsig2_images.part000000000098/LOXL4.5_2327_10000_0.6732_0.8294_0.8332.png
                gene_name: LOXL4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 47 percent done.
LPIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
Cons ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
KS ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
LPIN2   10000 perm   2 sec   (5265 perm/sec)   p_kst 7.872000e-01   p_cons 3.192000e-01   p_joint 8.555000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN2.5_2767_10000_0.7872_0.3192_0.8555.png
                gene_name: LPIN2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 49 percent done.
LPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
KS ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
LPL   10000 perm   2 sec   (5502 perm/sec)   p_kst 2.124000e-01   p_cons 1.305000e-01   p_joint 1.669000e-01

Joint ci ratio: 5.606796e-02	ci left: 1.908641e-01	ci right 2.019243e-01	k: 3927	n:20000
Cons ci ratio: 6.770383e-02	ci left: 1.386683e-01	ci right 1.484355e-01	k: 2870	n:20000
KS ci ratio: 5.378563e-02	ci left: 2.041746e-01	ci right 2.155099e-01	k: 4196	n:20000
LPL   20000 perm   4 sec   (4901 perm/sec)   p_kst 2.098000e-01   p_cons 1.435000e-01   p_joint 1.963500e-01

Outputting figure to mutsig2_images.part000000000098/LPL.5_1468_20000_0.2098_0.1435_0.19635.png
                gene_name: LPL
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 51 percent done.
LPPR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
Cons ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
KS ci ratio: 3.910801e-02	ci left: 4.912511e-01	ci right 5.109483e-01	k: 5011	n:10000
LPPR5   10000 perm   2 sec   (6004 perm/sec)   p_kst 5.011000e-01   p_cons 9.549000e-01   p_joint 6.277000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR5.5_990_10000_0.5011_0.9549_0.6277.png
                gene_name: LPPR5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 53 percent done.
LRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
Cons ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
KS ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
LRP5   10000 perm   2 sec   (4559 perm/sec)   p_kst 5.067000e-01   p_cons 3.014000e-01   p_joint 5.142000e-01

Outputting figure to mutsig2_images.part000000000098/LRP5.5_4940_10000_0.5067_0.3014_0.5142.png
                gene_name: LRP5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 54 percent done.
LRRC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
Cons ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
KS ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
LRRC16A   10000 perm   2 sec   (5056 perm/sec)   p_kst 3.280000e-01   p_cons 4.504000e-01   p_joint 5.639000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC16A.5_4264_10000_0.328_0.4504_0.5639.png
                gene_name: LRRC16A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 56 percent done.
LPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
Cons ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
KS ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
LPO   10000 perm   2 sec   (5671 perm/sec)   p_kst 4.652000e-01   p_cons 1.513000e-01   p_joint 3.008000e-01

Outputting figure to mutsig2_images.part000000000098/LPO.4_2187_10000_0.4652_0.1513_0.3008.png
                gene_name: LPO
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
LRCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
Cons ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
KS ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
LRCH3   10000 perm   2 sec   (5458 perm/sec)   p_kst 4.844000e-01   p_cons 1.366000e-01   p_joint 3.805000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH3.4_2215_10000_0.4844_0.1366_0.3805.png
                gene_name: LRCH3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 59 percent done.
LRIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
Cons ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
KS ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
LRIG2   10000 perm   2 sec   (5147 perm/sec)   p_kst 8.223000e-01   p_cons 7.199000e-01   p_joint 9.736000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG2.4_3270_10000_0.8223_0.7199_0.9736.png
                gene_name: LRIG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 61 percent done.
LPAR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
KS ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
LPAR4   10000 perm   2 sec   (6425 perm/sec)   p_kst 7.323000e-01   p_cons 7.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPAR4.3_1117_10000_0.7323_0.7965_1.png
                gene_name: LPAR4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
LPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
KS ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
LPHN1   10000 perm   2 sec   (5062 perm/sec)   p_kst 7.914000e-01   p_cons 5.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPHN1.3_4517_10000_0.7914_0.5957_1.png
                gene_name: LPHN1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
LPIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
Cons ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KS ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
LPIN1   10000 perm   2 sec   (5504 perm/sec)   p_kst 3.301000e-01   p_cons 7.914000e-01   p_joint 5.254000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN1.3_2749_10000_0.3301_0.7914_0.5254.png
                gene_name: LPIN1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 66 percent done.
LPPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
LPPR1   10000 perm   2 sec   (6507 perm/sec)   p_kst 9.690000e-01   p_cons 5.509000e-01   p_joint 9.908000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR1.3_1006_10000_0.969_0.5509_0.9908.png
                gene_name: LPPR1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 68 percent done.
LRAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.706228e-02	ci left: 6.679356e-01	ci right 6.863611e-01	k: 6772	n:10000
KS ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
LRAT   10000 perm   2 sec   (6441 perm/sec)   p_kst 8.346000e-01   p_cons 6.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRAT.3_701_10000_0.8346_0.6772_1.png
                gene_name: LRAT
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
LRIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
KS ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
LRIG3   10000 perm   2 sec   (5307 perm/sec)   p_kst 2.745000e-01   p_cons 5.910000e-01   p_joint 3.906000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG3.3_3496_10000_0.2745_0.591_0.3906.png
                gene_name: LRIG3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 71 percent done.
LRIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
Cons ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
LRIT3   10000 perm   2 sec   (5995 perm/sec)   p_kst 6.530000e-02   p_cons 5.057000e-01   p_joint 1.615000e-01

Joint ci ratio: 7.311807e-02	ci left: 1.210368e-01	ci right 1.302723e-01	k: 2512	n:20000
Cons ci ratio: 2.728749e-02	ci left: 5.008456e-01	ci right 5.147521e-01	k: 10156	n:20000
KS ci ratio: 1.009147e-01	ci left: 6.659926e-02	ci right 7.372632e-02	k: 1402	n:20000
LRIT3   20000 perm   4 sec   (5327 perm/sec)   p_kst 7.010000e-02   p_cons 5.078000e-01   p_joint 1.256000e-01

Joint ci ratio: 5.269506e-02	ci left: 1.516140e-01	ci right 1.598528e-01	k: 4671	n:30000
Cons ci ratio: 2.243123e-02	ci left: 4.987588e-01	ci right 5.101070e-01	k: 15133	n:30000
KS ci ratio: 8.463514e-02	ci left: 6.390207e-02	ci right 6.958219e-02	k: 2001	n:30000
LRIT3   30000 perm   6 sec   (5049 perm/sec)   p_kst 6.670000e-02   p_cons 5.044333e-01   p_joint 1.557000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT3.3_1917_30000_0.0667_0.50443_0.1557.png
                gene_name: LRIT3
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 73 percent done.
LRMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
KS ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
LRMP   10000 perm   2 sec   (6173 perm/sec)   p_kst 9.829000e-01   p_cons 8.288000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRMP.3_1568_10000_0.9829_0.8288_1.png
                gene_name: LRMP
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
LRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
LRP8   10000 perm   2 sec   (5438 perm/sec)   p_kst 9.593000e-01   p_cons 5.360000e-02   p_joint 1.781000e-01

Joint ci ratio: 4.635877e-02	ci left: 2.572059e-01	ci right 2.694630e-01	k: 5266	n:20000
Cons ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
KS ci ratio: 5.831855e-03	ci left: 9.547667e-01	ci right 9.603993e-01	k: 19153	n:20000
LRP8   20000 perm   4 sec   (4860 perm/sec)   p_kst 9.576500e-01   p_cons 5.415000e-02   p_joint 2.633000e-01

Joint ci ratio: 4.976674e-02	ci left: 1.670848e-01	ci right 1.756456e-01	k: 5140	n:30000
Cons ci ratio: 9.592074e-02	ci left: 5.019840e-02	ci right 5.528866e-02	k: 1581	n:30000
KS ci ratio: 4.757980e-03	ci left: 9.553610e-01	ci right 9.599498e-01	k: 28731	n:30000
LRP8   30000 perm   6 sec   (4643 perm/sec)   p_kst 9.577000e-01   p_cons 5.270000e-02   p_joint 1.713333e-01

Outputting figure to mutsig2_images.part000000000098/LRP8.3_2968_30000_0.9577_0.0527_0.17133.png
                gene_name: LRP8
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 76 percent done.
LRRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
Cons ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
LRRC1   10000 perm   2 sec   (6121 perm/sec)   p_kst 5.661000e-01   p_cons 3.276000e-01   p_joint 5.974000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC1.3_1631_10000_0.5661_0.3276_0.5974.png
                gene_name: LRRC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 78 percent done.
LRRC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
Cons ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
KS ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
LRRC10   10000 perm   1 sec   (6869 perm/sec)   p_kst 3.276000e-01   p_cons 3.252000e-01   p_joint 5.013000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC10.3_838_10000_0.3276_0.3252_0.5013.png
                gene_name: LRRC10
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 80 percent done.
LRRC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
KS ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
LRRC16B   10000 perm   2 sec   (4939 perm/sec)   p_kst 6.798000e-01   p_cons 6.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRRC16B.3_4279_10000_0.6798_0.6968_1.png
                gene_name: LRRC16B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
LOC81691
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
LOC81691   10000 perm   2 sec   (6176 perm/sec)   p_kst 8.575000e-01   p_cons 8.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOC81691.2_2401_10000_0.8575_0.8634_1.png
                gene_name: LOC81691
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
LONRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
Cons ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
KS ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
LONRF1   10000 perm   2 sec   (5987 perm/sec)   p_kst 5.708000e-01   p_cons 1.789000e-01   p_joint 2.834000e-01

Outputting figure to mutsig2_images.part000000000098/LONRF1.2_2370_10000_0.5708_0.1789_0.2834.png
                gene_name: LONRF1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 85 percent done.
LONRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
LONRF2   10000 perm   2 sec   (6008 perm/sec)   p_kst 4.490000e-01   p_cons 1.030000e-02   p_joint 2.670000e-02

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
KS ci ratio: 3.022093e-02	ci left: 4.499280e-01	ci right 4.637845e-01	k: 9137	n:20000
LONRF2   20000 perm   4 sec   (5341 perm/sec)   p_kst 4.568500e-01   p_cons 1.160000e-02   p_joint 9.105000e-02

Joint ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
Cons ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
KS ci ratio: 2.479814e-02	ci left: 4.487536e-01	ci right 4.600552e-01	k: 13632	n:30000
LONRF2   30000 perm   6 sec   (5096 perm/sec)   p_kst 4.544000e-01   p_cons 1.173333e-02   p_joint 5.330000e-02

Joint ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
Cons ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
KS ci ratio: 2.150972e-02	ci left: 4.487372e-01	ci right 4.585195e-01	k: 18145	n:40000
LONRF2   40000 perm   8 sec   (4927 perm/sec)   p_kst 4.536250e-01   p_cons 1.157500e-02   p_joint 4.547500e-02

Joint ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
Cons ci ratio: 1.797695e-01	ci left: 8.572762e-03	ci right 1.028492e-02	k: 470	n:50000
KS ci ratio: 1.922371e-02	ci left: 4.496487e-01	ci right 4.583966e-01	k: 22701	n:50000
LONRF2   50000 perm   10 sec   (4797 perm/sec)   p_kst 4.540200e-01   p_cons 9.400000e-03   p_joint 1.786000e-02

Joint ci ratio: 1.180356e-01	ci left: 1.698358e-02	ci right 1.913006e-02	k: 1082	n:60000
Cons ci ratio: 1.622619e-01	ci left: 8.851240e-03	ci right 1.043007e-02	k: 577	n:60000
KS ci ratio: 1.751422e-02	ci left: 4.510094e-01	ci right 4.589950e-01	k: 27300	n:60000
LONRF2   60000 perm   13 sec   (4683 perm/sec)   p_kst 4.550000e-01   p_cons 9.616667e-03   p_joint 1.803333e-02

Joint ci ratio: 8.078341e-02	ci left: 3.122667e-02	ci right 3.386941e-02	k: 2277	n:70000
Cons ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
KS ci ratio: 1.619921e-02	ci left: 4.517912e-01	ci right 4.591839e-01	k: 31884	n:70000
LONRF2   70000 perm   15 sec   (4569 perm/sec)   p_kst 4.554857e-01   p_cons 9.985714e-03   p_joint 3.252857e-02

Joint ci ratio: 8.032022e-02	ci left: 2.774999e-02	ci right 3.008434e-02	k: 2312	n:80000
Cons ci ratio: 1.380718e-01	ci left: 9.285868e-03	ci right 1.067501e-02	k: 797	n:80000
KS ci ratio: 1.516404e-02	ci left: 4.516697e-01	ci right 4.585836e-01	k: 36410	n:80000
LONRF2   80000 perm   18 sec   (4467 perm/sec)   p_kst 4.551250e-01   p_cons 9.962500e-03   p_joint 2.890000e-02

Joint ci ratio: 7.580358e-02	ci left: 2.776064e-02	ci right 2.995876e-02	k: 2596	n:90000
Cons ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
KS ci ratio: 1.431679e-02	ci left: 4.511763e-01	ci right 4.576933e-01	k: 40899	n:90000
LONRF2   90000 perm   21 sec   (4378 perm/sec)   p_kst 4.544333e-01   p_cons 9.966667e-03   p_joint 2.884444e-02

Joint ci ratio: 7.286236e-02	ci left: 2.710409e-02	ci right 2.916341e-02	k: 2812	n:100000
Cons ci ratio: 1.242206e-01	ci left: 9.247157e-03	ci right 1.048152e-02	k: 985	n:100000
KS ci ratio: 1.359948e-02	ci left: 4.507107e-01	ci right 4.568920e-01	k: 45380	n:100000
LONRF2   100000 perm   23 sec   (4293 perm/sec)   p_kst 4.538000e-01   p_cons 9.850000e-03   p_joint 2.812000e-02

Joint ci ratio: 7.626417e-02	ci left: 2.255930e-02	ci right 2.435685e-02	k: 2579	n:110000
Cons ci ratio: 1.180884e-01	ci left: 9.332158e-03	ci right 1.051208e-02	k: 1090	n:110000
KS ci ratio: 1.296590e-02	ci left: 4.508818e-01	ci right 4.567751e-01	k: 49921	n:110000
LONRF2   110000 perm   26 sec   (4216 perm/sec)   p_kst 4.538273e-01   p_cons 9.909091e-03   p_joint 2.344545e-02

Joint ci ratio: 6.589984e-02	ci left: 2.769698e-02	ci right 2.959256e-02	k: 3436	n:120000
Cons ci ratio: 1.131178e-01	ci left: 9.347539e-03	ci right 1.047634e-02	k: 1188	n:120000
KS ci ratio: 1.241398e-02	ci left: 4.510051e-01	ci right 4.566471e-01	k: 54459	n:120000
LONRF2   120000 perm   29 sec   (4136 perm/sec)   p_kst 4.538250e-01   p_cons 9.900000e-03   p_joint 2.863333e-02

Joint ci ratio: 6.334446e-02	ci left: 2.770819e-02	ci right 2.952830e-02	k: 3719	n:130000
Cons ci ratio: 1.095896e-01	ci left: 9.211751e-03	ci right 1.028721e-02	k: 1266	n:130000
KS ci ratio: 1.193610e-02	ci left: 4.507372e-01	ci right 4.561572e-01	k: 58948	n:130000
LONRF2   130000 perm   32 sec   (4058 perm/sec)   p_kst 4.534462e-01   p_cons 9.738462e-03   p_joint 2.860769e-02

Joint ci ratio: 6.110431e-02	ci left: 2.768384e-02	ci right 2.943576e-02	k: 3997	n:140000
Cons ci ratio: 1.051938e-01	ci left: 9.304503e-03	ci right 1.034452e-02	k: 1374	n:140000
KS ci ratio: 1.150465e-02	ci left: 4.507183e-01	ci right 4.559408e-01	k: 63466	n:140000
LONRF2   140000 perm   35 sec   (3982 perm/sec)   p_kst 4.533286e-01   p_cons 9.814286e-03   p_joint 2.855000e-02

Joint ci ratio: 5.936541e-02	ci left: 2.740747e-02	ci right 2.909084e-02	k: 4236	n:150000
Cons ci ratio: 1.020903e-01	ci left: 9.236164e-03	ci right 1.023626e-02	k: 1459	n:150000
KS ci ratio: 1.111684e-02	ci left: 4.507051e-01	ci right 4.557501e-01	k: 67984	n:150000
LONRF2   150000 perm   38 sec   (3913 perm/sec)   p_kst 4.532267e-01   p_cons 9.726667e-03   p_joint 2.824000e-02

Joint ci ratio: 7.917990e-02	ci left: 1.448974e-02	ci right 1.569042e-02	k: 2413	n:160000
Cons ci ratio: 9.866737e-02	ci left: 9.286506e-03	ci right 1.025638e-02	k: 1562	n:160000
KS ci ratio: 1.076320e-02	ci left: 4.508148e-01	ci right 4.556994e-01	k: 72521	n:160000
LONRF2   160000 perm   42 sec   (3845 perm/sec)   p_kst 4.532563e-01   p_cons 9.762500e-03   p_joint 1.508125e-02

Outputting figure to mutsig2_images.part000000000098/LONRF2.2_2313_160000_0.45326_0.0097625_0.015081.png
                gene_name: LONRF2
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0098 
      ci_cons_bounds_left: 0.0093 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 86 percent done.
LOXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
Cons ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
KS ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
LOXL2   10000 perm   2 sec   (5972 perm/sec)   p_kst 3.120000e-02   p_cons 7.909000e-01   p_joint 5.472000e-01

Joint ci ratio: 2.537868e-02	ci left: 5.370163e-01	ci right 5.508709e-01	k: 10879	n:20000
Cons ci ratio: 1.428917e-02	ci left: 7.843386e-01	ci right 7.956769e-01	k: 15801	n:20000
KS ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
LOXL2   20000 perm   4 sec   (5321 perm/sec)   p_kst 3.120000e-02   p_cons 7.900500e-01   p_joint 5.439500e-01

Joint ci ratio: 3.686137e-02	ci left: 2.686933e-01	ci right 2.788172e-01	k: 8212	n:30000
Cons ci ratio: 1.161131e-02	ci left: 7.869927e-01	ci right 7.962174e-01	k: 23749	n:30000
KS ci ratio: 1.260431e-01	ci left: 2.926149e-02	ci right 3.322998e-02	k: 936	n:30000
LOXL2   30000 perm   6 sec   (5059 perm/sec)   p_kst 3.120000e-02   p_cons 7.916333e-01   p_joint 2.737333e-01

Joint ci ratio: 2.632301e-02	ci left: 3.519538e-01	ci right 3.613670e-01	k: 14266	n:40000
Cons ci ratio: 1.008259e-02	ci left: 7.867302e-01	ci right 7.947276e-01	k: 31630	n:40000
KS ci ratio: 1.081045e-01	ci left: 3.010201e-02	ci right 3.356640e-02	k: 1272	n:40000
LOXL2   40000 perm   8 sec   (4890 perm/sec)   p_kst 3.180000e-02   p_cons 7.907500e-01   p_joint 3.566500e-01

Joint ci ratio: 3.656504e-02	ci left: 1.834714e-01	ci right 1.903250e-01	k: 9344	n:50000
Cons ci ratio: 9.018946e-03	ci left: 7.871275e-01	ci right 7.942787e-01	k: 39536	n:50000
KS ci ratio: 9.698335e-02	ci left: 3.010345e-02	ci right 3.319124e-02	k: 1581	n:50000
LOXL2   50000 perm   11 sec   (4757 perm/sec)   p_kst 3.162000e-02   p_cons 7.907200e-01   p_joint 1.868800e-01

Outputting figure to mutsig2_images.part000000000098/LOXL2.2_2377_50000_0.03162_0.79072_0.18688.png
                gene_name: LOXL2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
LOXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
LOXL3   10000 perm   2 sec   (5990 perm/sec)   p_kst 1.918000e-01   p_cons 2.125000e-01   p_joint 1.236000e-01

Joint ci ratio: 2.984314e-02	ci left: 4.561702e-01	ci right 4.700406e-01	k: 9262	n:20000
Cons ci ratio: 4.891623e-02	ci left: 2.370686e-01	ci right 2.490062e-01	k: 4860	n:20000
KS ci ratio: 5.699960e-02	ci left: 1.857702e-01	ci right 1.967197e-01	k: 3824	n:20000
LOXL3   20000 perm   4 sec   (5327 perm/sec)   p_kst 1.912000e-01   p_cons 2.430000e-01   p_joint 4.631000e-01

Outputting figure to mutsig2_images.part000000000098/LOXL3.2_2314_20000_0.1912_0.243_0.4631.png
                gene_name: LOXL3
               theta_stop: 0.057 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 90 percent done.
LPCAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
LPCAT2   10000 perm   2 sec   (6290 perm/sec)   p_kst 3.153000e-01   p_cons 9.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPCAT2.2_1691_10000_0.3153_0.9358_1.png
                gene_name: LPCAT2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
LPCAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
Cons ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
KS ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
LPCAT4   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.678000e-01   p_cons 8.914000e-01   p_joint 6.609000e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT4.2_1631_10000_0.2678_0.8914_0.6609.png
                gene_name: LPCAT4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 93 percent done.
LPIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
Cons ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
LPIN3   10000 perm   2 sec   (6069 perm/sec)   p_kst 7.794000e-01   p_cons 4.218000e-01   p_joint 8.809000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN3.2_2632_10000_0.7794_0.4218_0.8809.png
                gene_name: LPIN3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 95 percent done.
LRCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
KS ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
LRCH2   10000 perm   2 sec   (5969 perm/sec)   p_kst 5.681000e-01   p_cons 5.399000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRCH2.2_2382_10000_0.5681_0.5399_1.png
                gene_name: LRCH2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
LRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
Cons ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
LRP10   10000 perm   2 sec   (6268 perm/sec)   p_kst 1.200000e-03   p_cons 9.374000e-01   p_joint 1.200000e-03

Joint ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
Cons ci ratio: 6.721529e-03	ci left: 9.412367e-01	ci right 9.476333e-01	k: 18890	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
LRP10   20000 perm   4 sec   (5519 perm/sec)   p_kst 1.200000e-03   p_cons 9.445000e-01   p_joint 1.200000e-03

Joint ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
Cons ci ratio: 5.438472e-03	ci left: 9.428030e-01	ci right 9.479770e-01	k: 28363	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
LRP10   30000 perm   6 sec   (5238 perm/sec)   p_kst 1.266667e-03   p_cons 9.454333e-01   p_joint 1.266667e-03

Joint ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
Cons ci ratio: 4.758802e-03	ci left: 9.420585e-01	ci right 9.465767e-01	k: 37774	n:40000
KS ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
LRP10   40000 perm   8 sec   (5060 perm/sec)   p_kst 1.350000e-03   p_cons 9.443500e-01   p_joint 1.350000e-03

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 4.253420e-03	ci left: 9.423759e-01	ci right 9.464123e-01	k: 47221	n:50000
KS ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
LRP10   50000 perm   10 sec   (4917 perm/sec)   p_kst 1.340000e-03   p_cons 9.444200e-01   p_joint 1.340000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 3.911736e-03	ci left: 9.417581e-01	ci right 9.454656e-01	k: 56618	n:60000
KS ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
LRP10   60000 perm   12 sec   (4801 perm/sec)   p_kst 1.316667e-03   p_cons 9.436333e-01   p_joint 1.316667e-03

Joint ci ratio: 4.523968e-01	ci left: 8.301729e-04	ci right 1.326967e-03	k: 74	n:70000
Cons ci ratio: 3.624583e-03	ci left: 9.418075e-01	ci right 9.452414e-01	k: 66048	n:70000
KS ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
LRP10   70000 perm   15 sec   (4697 perm/sec)   p_kst 1.285714e-03   p_cons 9.435429e-01   p_joint 1.057143e-03

Joint ci ratio: 3.917525e-01	ci left: 1.005889e-03	ci right 1.506409e-03	k: 99	n:80000
Cons ci ratio: 3.372284e-03	ci left: 9.424983e-01	ci right 9.456944e-01	k: 75529	n:80000
KS ci ratio: 3.917525e-01	ci left: 1.005889e-03	ci right 1.506409e-03	k: 99	n:80000
LRP10   80000 perm   17 sec   (4600 perm/sec)   p_kst 1.237500e-03   p_cons 9.441125e-01   p_joint 1.237500e-03

Joint ci ratio: 4.062727e-01	ci left: 8.241325e-04	ci right 1.253520e-03	k: 92	n:90000
Cons ci ratio: 3.188791e-03	ci left: 9.422754e-01	ci right 9.452959e-01	k: 84942	n:90000
KS ci ratio: 3.701726e-01	ci left: 1.014698e-03	ci right 1.485064e-03	k: 111	n:90000
LRP10   90000 perm   20 sec   (4499 perm/sec)   p_kst 1.233333e-03   p_cons 9.438000e-01   p_joint 1.022222e-03

Joint ci ratio: 4.062940e-01	ci left: 7.417123e-04	ci right 1.128181e-03	k: 92	n:100000
Cons ci ratio: 3.030828e-03	ci left: 9.421523e-01	ci right 9.450219e-01	k: 94360	n:100000
KS ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
LRP10   100000 perm   23 sec   (4412 perm/sec)   p_kst 1.210000e-03   p_cons 9.436000e-01   p_joint 9.200000e-04

Joint ci ratio: 3.409859e-01	ci left: 9.958092e-04	ci right 1.413024e-03	k: 131	n:110000
Cons ci ratio: 2.885813e-03	ci left: 9.423675e-01	ci right 9.450999e-01	k: 103812	n:110000
KS ci ratio: 3.409859e-01	ci left: 9.958092e-04	ci right 1.413024e-03	k: 131	n:110000
LRP10   110000 perm   25 sec   (4329 perm/sec)   p_kst 1.190909e-03   p_cons 9.437455e-01   p_joint 1.190909e-03

Joint ci ratio: 3.685874e-01	ci left: 7.685639e-04	ci right 1.122936e-03	k: 112	n:120000
Cons ci ratio: 2.761739e-03	ci left: 9.424736e-01	ci right 9.450883e-01	k: 113255	n:120000
KS ci ratio: 3.242227e-01	ci left: 1.019757e-03	ci right 1.421638e-03	k: 145	n:120000
LRP10   120000 perm   28 sec   (4250 perm/sec)   p_kst 1.208333e-03   p_cons 9.437917e-01   p_joint 9.333333e-04

Joint ci ratio: 3.547322e-01	ci left: 7.723859e-04	ci right 1.112050e-03	k: 121	n:130000
Cons ci ratio: 2.648360e-03	ci left: 9.427286e-01	ci right 9.452362e-01	k: 122719	n:130000
KS ci ratio: 3.126599e-01	ci left: 1.019169e-03	ci right 1.403636e-03	k: 156	n:130000
LRP10   130000 perm   31 sec   (4176 perm/sec)   p_kst 1.200000e-03   p_cons 9.439923e-01   p_joint 9.307692e-04

Joint ci ratio: 3.436459e-01	ci left: 7.693474e-04	ci right 1.094752e-03	k: 129	n:140000
Cons ci ratio: 2.551311e-03	ci left: 9.428045e-01	ci right 9.452200e-01	k: 132163	n:140000
KS ci ratio: 3.040695e-01	ci left: 1.005683e-03	ci right 1.372622e-03	k: 165	n:140000
LRP10   140000 perm   34 sec   (4106 perm/sec)   p_kst 1.178571e-03   p_cons 9.440214e-01   p_joint 9.214286e-04

Joint ci ratio: 2.953067e-01	ci left: 1.000292e-03	ci right 1.352779e-03	k: 175	n:150000
Cons ci ratio: 2.468089e-03	ci left: 9.427033e-01	ci right 9.450395e-01	k: 141582	n:150000
KS ci ratio: 2.953067e-01	ci left: 1.000292e-03	ci right 1.352779e-03	k: 175	n:150000
LRP10   150000 perm   37 sec   (4035 perm/sec)   p_kst 1.166667e-03   p_cons 9.438800e-01   p_joint 1.166667e-03

Joint ci ratio: 2.896081e-01	ci left: 9.783133e-04	ci right 1.315183e-03	k: 182	n:160000
Cons ci ratio: 2.384744e-03	ci left: 9.429632e-01	ci right 9.452207e-01	k: 151056	n:160000
KS ci ratio: 2.896081e-01	ci left: 9.783133e-04	ci right 1.315183e-03	k: 182	n:160000
LRP10   160000 perm   40 sec   (3968 perm/sec)   p_kst 1.137500e-03   p_cons 9.441000e-01   p_joint 1.137500e-03

Joint ci ratio: 2.820067e-01	ci left: 9.753731e-04	ci right 1.300848e-03	k: 192	n:170000
Cons ci ratio: 2.309278e-03	ci left: 9.431933e-01	ci right 9.453797e-01	k: 160530	n:170000
KS ci ratio: 2.820067e-01	ci left: 9.753731e-04	ci right 1.300848e-03	k: 192	n:170000
LRP10   170000 perm   44 sec   (3896 perm/sec)   p_kst 1.129412e-03   p_cons 9.442941e-01   p_joint 1.129412e-03

Joint ci ratio: 2.756547e-01	ci left: 9.676897e-04	ci right 1.282066e-03	k: 201	n:180000
Cons ci ratio: 2.240527e-03	ci left: 9.433987e-01	ci right 9.455203e-01	k: 170004	n:180000
KS ci ratio: 2.756547e-01	ci left: 9.676897e-04	ci right 1.282066e-03	k: 201	n:180000
LRP10   180000 perm   47 sec   (3827 perm/sec)   p_kst 1.116667e-03   p_cons 9.444667e-01   p_joint 1.116667e-03

Joint ci ratio: 2.665699e-01	ci left: 9.854370e-04	ci right 1.293267e-03	k: 215	n:190000
Cons ci ratio: 2.177882e-03	ci left: 9.435673e-01	ci right 9.456297e-01	k: 179475	n:190000
KS ci ratio: 2.665699e-01	ci left: 9.854370e-04	ci right 1.293267e-03	k: 215	n:190000
LRP10   190000 perm   51 sec   (3762 perm/sec)   p_kst 1.131579e-03   p_cons 9.446053e-01   p_joint 1.131579e-03

Joint ci ratio: 2.606065e-01	ci left: 9.828617e-04	ci right 1.281900e-03	k: 225	n:200000
Cons ci ratio: 2.121622e-03	ci left: 9.436490e-01	ci right 9.456581e-01	k: 188932	n:200000
KS ci ratio: 2.606065e-01	ci left: 9.828617e-04	ci right 1.281900e-03	k: 225	n:200000
LRP10   200000 perm   54 sec   (3700 perm/sec)   p_kst 1.125000e-03   p_cons 9.446600e-01   p_joint 1.125000e-03

Joint ci ratio: 2.523639e-01	ci left: 1.002898e-03	ci right 1.296865e-03	k: 240	n:210000
Cons ci ratio: 2.070639e-03	ci left: 9.436659e-01	ci right 9.456266e-01	k: 198377	n:210000
KS ci ratio: 2.523639e-01	ci left: 1.002898e-03	ci right 1.296865e-03	k: 240	n:210000
LRP10   210000 perm   58 sec   (3639 perm/sec)   p_kst 1.142857e-03   p_cons 9.446524e-01   p_joint 1.142857e-03

Joint ci ratio: 2.453371e-01	ci left: 1.016981e-03	ci right 1.305512e-03	k: 254	n:220000
Cons ci ratio: 2.025799e-03	ci left: 9.435443e-01	ci right 9.454621e-01	k: 207792	n:220000
KS ci ratio: 2.453371e-01	ci left: 1.016981e-03	ci right 1.305512e-03	k: 254	n:220000
LRP10   220000 perm   61 sec   (3581 perm/sec)   p_kst 1.154545e-03   p_cons 9.445091e-01   p_joint 1.154545e-03

Joint ci ratio: 2.393120e-01	ci left: 1.025856e-03	ci right 1.308696e-03	k: 267	n:230000
Cons ci ratio: 1.979549e-03	ci left: 9.436573e-01	ci right 9.455315e-01	k: 217258	n:230000
KS ci ratio: 2.393120e-01	ci left: 1.025856e-03	ci right 1.308696e-03	k: 267	n:230000
LRP10   230000 perm   65 sec   (3525 perm/sec)   p_kst 1.160870e-03   p_cons 9.446000e-01   p_joint 1.160870e-03

Joint ci ratio: 2.345473e-01	ci left: 1.026224e-03	ci right 1.302716e-03	k: 278	n:240000
Cons ci ratio: 1.938793e-03	ci left: 9.436269e-01	ci right 9.454623e-01	k: 226692	n:240000
KS ci ratio: 2.345473e-01	ci left: 1.026224e-03	ci right 1.302716e-03	k: 278	n:240000
LRP10   240000 perm   69 sec   (3474 perm/sec)   p_kst 1.158333e-03   p_cons 9.445500e-01   p_joint 1.158333e-03

Joint ci ratio: 2.277100e-01	ci left: 1.049240e-03	ci right 1.322535e-03	k: 295	n:250000
Cons ci ratio: 1.899583e-03	ci left: 9.436477e-01	ci right 9.454459e-01	k: 236138	n:250000
KS ci ratio: 2.277100e-01	ci left: 1.049240e-03	ci right 1.322535e-03	k: 295	n:250000
LRP10   250000 perm   73 sec   (3426 perm/sec)   p_kst 1.180000e-03   p_cons 9.445520e-01   p_joint 1.180000e-03

Joint ci ratio: 2.225078e-01	ci left: 1.059696e-03	ci right 1.328545e-03	k: 309	n:260000
Cons ci ratio: 1.860127e-03	ci left: 9.438107e-01	ci right 9.455717e-01	k: 245621	n:260000
KS ci ratio: 2.225078e-01	ci left: 1.059696e-03	ci right 1.328545e-03	k: 309	n:260000
LRP10   260000 perm   77 sec   (3380 perm/sec)   p_kst 1.188462e-03   p_cons 9.446962e-01   p_joint 1.188462e-03

Joint ci ratio: 2.134023e-01	ci left: 1.114995e-03	ci right 1.384783e-03	k: 336	n:270000
Cons ci ratio: 1.825416e-03	ci left: 9.438238e-01	ci right 9.455519e-01	k: 255067	n:270000
KS ci ratio: 2.134023e-01	ci left: 1.114995e-03	ci right 1.384783e-03	k: 336	n:270000
LRP10   270000 perm   81 sec   (3334 perm/sec)   p_kst 1.244444e-03   p_cons 9.446926e-01   p_joint 1.244444e-03

Joint ci ratio: 2.097016e-01	ci left: 1.115760e-03	ci right 1.380451e-03	k: 348	n:280000
Cons ci ratio: 1.792823e-03	ci left: 9.438218e-01	ci right 9.455190e-01	k: 264509	n:280000
KS ci ratio: 2.097016e-01	ci left: 1.115760e-03	ci right 1.380451e-03	k: 348	n:280000
LRP10   280000 perm   85 sec   (3289 perm/sec)   p_kst 1.242857e-03   p_cons 9.446750e-01   p_joint 1.242857e-03

Joint ci ratio: 2.061870e-01	ci left: 1.116510e-03	ci right 1.376380e-03	k: 360	n:290000
Cons ci ratio: 1.761160e-03	ci left: 9.438654e-01	ci right 9.455326e-01	k: 273964	n:290000
KS ci ratio: 2.061870e-01	ci left: 1.116510e-03	ci right 1.376380e-03	k: 360	n:290000
LRP10   290000 perm   89 sec   (3245 perm/sec)   p_kst 1.241379e-03   p_cons 9.447034e-01   p_joint 1.241379e-03

Joint ci ratio: 2.020315e-01	ci left: 1.126739e-03	ci right 1.383052e-03	k: 375	n:300000
Cons ci ratio: 1.728574e-03	ci left: 9.440607e-01	ci right 9.456973e-01	k: 283465	n:300000
KS ci ratio: 2.020315e-01	ci left: 1.126739e-03	ci right 1.383052e-03	k: 375	n:300000
LRP10   300000 perm   94 sec   (3204 perm/sec)   p_kst 1.250000e-03   p_cons 9.448833e-01   p_joint 1.250000e-03

Joint ci ratio: 1.996573e-01	ci left: 1.117964e-03	ci right 1.368928e-03	k: 384	n:310000
Cons ci ratio: 1.701508e-03	ci left: 9.440098e-01	ci right 9.456206e-01	k: 292894	n:310000
KS ci ratio: 1.996573e-01	ci left: 1.117964e-03	ci right 1.368928e-03	k: 384	n:310000
LRP10   310000 perm   98 sec   (3162 perm/sec)   p_kst 1.238710e-03   p_cons 9.448194e-01   p_joint 1.238710e-03

Joint ci ratio: 1.966168e-01	ci left: 1.118667e-03	ci right 1.365507e-03	k: 396	n:320000
Cons ci ratio: 1.674619e-03	ci left: 9.440283e-01	ci right 9.456136e-01	k: 302344	n:320000
KS ci ratio: 1.966168e-01	ci left: 1.118667e-03	ci right 1.365507e-03	k: 396	n:320000
LRP10   320000 perm   103 sec   (3120 perm/sec)   p_kst 1.237500e-03   p_cons 9.448250e-01   p_joint 1.237500e-03

Joint ci ratio: 1.941870e-01	ci left: 1.113589e-03	ci right 1.355912e-03	k: 406	n:330000
Cons ci ratio: 1.647911e-03	ci left: 9.441130e-01	ci right 9.456731e-01	k: 311816	n:330000
KS ci ratio: 1.941870e-01	ci left: 1.113589e-03	ci right 1.355912e-03	k: 406	n:330000
LRP10   330000 perm   107 sec   (3081 perm/sec)   p_kst 1.230303e-03   p_cons 9.448970e-01   p_joint 1.230303e-03

Joint ci ratio: 1.907039e-01	ci left: 1.122829e-03	ci right 1.362273e-03	k: 421	n:340000
Cons ci ratio: 1.623357e-03	ci left: 9.441337e-01	ci right 9.456705e-01	k: 321268	n:340000
KS ci ratio: 1.907039e-01	ci left: 1.122829e-03	ci right 1.362273e-03	k: 421	n:340000
LRP10   340000 perm   112 sec   (3045 perm/sec)   p_kst 1.238235e-03   p_cons 9.449059e-01   p_joint 1.238235e-03

Joint ci ratio: 1.876167e-01	ci left: 1.128854e-03	ci right 1.365242e-03	k: 435	n:350000
Cons ci ratio: 1.601141e-03	ci left: 9.440699e-01	ci right 9.455855e-01	k: 330691	n:350000
KS ci ratio: 1.876167e-01	ci left: 1.128854e-03	ci right 1.365242e-03	k: 435	n:350000
LRP10   350000 perm   116 sec   (3011 perm/sec)   p_kst 1.242857e-03   p_cons 9.448314e-01   p_joint 1.242857e-03

Joint ci ratio: 1.867642e-01	ci left: 1.108086e-03	ci right 1.338951e-03	k: 439	n:360000
Cons ci ratio: 1.577580e-03	ci left: 9.441581e-01	ci right 9.456514e-01	k: 340167	n:360000
KS ci ratio: 1.867642e-01	ci left: 1.108086e-03	ci right 1.338951e-03	k: 439	n:360000
LRP10   360000 perm   121 sec   (2977 perm/sec)   p_kst 1.219444e-03   p_cons 9.449083e-01   p_joint 1.219444e-03

Joint ci ratio: 1.848837e-01	ci left: 1.101330e-03	ci right 1.328219e-03	k: 448	n:370000
Cons ci ratio: 1.557047e-03	ci left: 9.441055e-01	ci right 9.455794e-01	k: 349593	n:370000
KS ci ratio: 1.848837e-01	ci left: 1.101330e-03	ci right 1.328219e-03	k: 448	n:370000
LRP10   370000 perm   126 sec   (2944 perm/sec)   p_kst 1.210811e-03   p_cons 9.448459e-01   p_joint 1.210811e-03

Joint ci ratio: 1.820666e-01	ci left: 1.107498e-03	ci right 1.331797e-03	k: 462	n:380000
Cons ci ratio: 1.536983e-03	ci left: 9.440771e-01	ci right 9.455319e-01	k: 359027	n:380000
KS ci ratio: 1.820666e-01	ci left: 1.107498e-03	ci right 1.331797e-03	k: 462	n:380000
LRP10   380000 perm   131 sec   (2911 perm/sec)   p_kst 1.215789e-03   p_cons 9.448079e-01   p_joint 1.215789e-03

Joint ci ratio: 1.803232e-01	ci left: 1.101131e-03	ci right 1.321772e-03	k: 471	n:390000
Cons ci ratio: 1.517749e-03	ci left: 9.440451e-01	ci right 9.454816e-01	k: 368459	n:390000
KS ci ratio: 1.803232e-01	ci left: 1.101131e-03	ci right 1.321772e-03	k: 471	n:390000
LRP10   390000 perm   136 sec   (2878 perm/sec)   p_kst 1.207692e-03   p_cons 9.447667e-01   p_joint 1.207692e-03

Joint ci ratio: 1.782582e-01	ci left: 1.099869e-03	ci right 1.317460e-03	k: 482	n:400000
Cons ci ratio: 1.497423e-03	ci left: 9.441406e-01	ci right 9.455579e-01	k: 377941	n:400000
KS ci ratio: 1.782582e-01	ci left: 1.099869e-03	ci right 1.317460e-03	k: 482	n:400000
LRP10   400000 perm   141 sec   (2846 perm/sec)   p_kst 1.205000e-03   p_cons 9.448525e-01   p_joint 1.205000e-03

Joint ci ratio: 1.759065e-01	ci left: 1.103345e-03	ci right 1.318438e-03	k: 495	n:410000
Cons ci ratio: 1.478721e-03	ci left: 9.441727e-01	ci right 9.455723e-01	k: 387399	n:410000
KS ci ratio: 1.759065e-01	ci left: 1.103345e-03	ci right 1.318438e-03	k: 495	n:410000
LRP10   410000 perm   146 sec   (2815 perm/sec)   p_kst 1.207317e-03   p_cons 9.448756e-01   p_joint 1.207317e-03

Joint ci ratio: 1.739880e-01	ci left: 1.102118e-03	ci right 1.314383e-03	k: 506	n:420000
Cons ci ratio: 1.461002e-03	ci left: 9.441817e-01	ci right 9.455645e-01	k: 396848	n:420000
KS ci ratio: 1.739880e-01	ci left: 1.102118e-03	ci right 1.314383e-03	k: 506	n:420000
LRP10   420000 perm   151 sec   (2785 perm/sec)   p_kst 1.204762e-03   p_cons 9.448762e-01   p_joint 1.204762e-03

Joint ci ratio: 1.704911e-01	ci left: 1.123220e-03	ci right 1.334755e-03	k: 527	n:430000
Cons ci ratio: 1.442422e-03	ci left: 9.442980e-01	ci right 9.456634e-01	k: 406343	n:430000
KS ci ratio: 1.704911e-01	ci left: 1.123220e-03	ci right 1.334755e-03	k: 527	n:430000
LRP10   430000 perm   156 sec   (2755 perm/sec)   p_kst 1.225581e-03   p_cons 9.449837e-01   p_joint 1.225581e-03

Joint ci ratio: 1.685862e-01	ci left: 1.123808e-03	ci right 1.332849e-03	k: 539	n:440000
Cons ci ratio: 1.426523e-03	ci left: 9.442629e-01	ci right 9.456131e-01	k: 415774	n:440000
KS ci ratio: 1.685862e-01	ci left: 1.123808e-03	ci right 1.332849e-03	k: 539	n:440000
LRP10   440000 perm   161 sec   (2725 perm/sec)   p_kst 1.225000e-03   p_cons 9.449409e-01   p_joint 1.225000e-03

Joint ci ratio: 1.662919e-01	ci left: 1.130772e-03	ci right 1.337958e-03	k: 554	n:450000
Cons ci ratio: 1.410144e-03	ci left: 9.443031e-01	ci right 9.456378e-01	k: 425238	n:450000
KS ci ratio: 1.662919e-01	ci left: 1.130772e-03	ci right 1.337958e-03	k: 554	n:450000
LRP10   450000 perm   167 sec   (2695 perm/sec)   p_kst 1.231111e-03   p_cons 9.449733e-01   p_joint 1.231111e-03

Joint ci ratio: 1.652540e-01	ci left: 1.120775e-03	ci right 1.324721e-03	k: 561	n:460000
Cons ci ratio: 1.393032e-03	ci left: 9.444378e-01	ci right 9.457565e-01	k: 434746	n:460000
KS ci ratio: 1.652540e-01	ci left: 1.120775e-03	ci right 1.324721e-03	k: 561	n:460000
LRP10   460000 perm   173 sec   (2666 perm/sec)   p_kst 1.219565e-03   p_cons 9.451000e-01   p_joint 1.219565e-03

Joint ci ratio: 1.625283e-01	ci left: 1.135697e-03	ci right 1.338617e-03	k: 580	n:470000
Cons ci ratio: 1.377793e-03	ci left: 9.444706e-01	ci right 9.457749e-01	k: 444209	n:470000
KS ci ratio: 1.625283e-01	ci left: 1.135697e-03	ci right 1.338617e-03	k: 580	n:470000
LRP10   470000 perm   178 sec   (2639 perm/sec)   p_kst 1.234043e-03   p_cons 9.451255e-01   p_joint 1.234043e-03

Joint ci ratio: 1.610115e-01	ci left: 1.134026e-03	ci right 1.334573e-03	k: 591	n:480000
Cons ci ratio: 1.363865e-03	ci left: 9.444393e-01	ci right 9.457303e-01	k: 453642	n:480000
KS ci ratio: 1.610115e-01	ci left: 1.134026e-03	ci right 1.334573e-03	k: 591	n:480000
LRP10   480000 perm   184 sec   (2612 perm/sec)   p_kst 1.231250e-03   p_cons 9.450875e-01   p_joint 1.231250e-03

Joint ci ratio: 1.590091e-01	ci left: 1.140269e-03	ci right 1.339173e-03	k: 606	n:490000
Cons ci ratio: 1.350005e-03	ci left: 9.444360e-01	ci right 9.457138e-01	k: 463088	n:490000
KS ci ratio: 1.590091e-01	ci left: 1.140269e-03	ci right 1.339173e-03	k: 606	n:490000
LRP10   490000 perm   190 sec   (2584 perm/sec)   p_kst 1.236735e-03   p_cons 9.450776e-01   p_joint 1.236735e-03

Joint ci ratio: 1.577157e-01	ci left: 1.136671e-03	ci right 1.333182e-03	k: 616	n:500000
Cons ci ratio: 1.335401e-03	ci left: 9.445234e-01	ci right 9.457875e-01	k: 472579	n:500000
KS ci ratio: 1.577157e-01	ci left: 1.136671e-03	ci right 1.333182e-03	k: 616	n:500000
LRP10   500000 perm   195 sec   (2558 perm/sec)   p_kst 1.232000e-03   p_cons 9.451580e-01   p_joint 1.232000e-03

Joint ci ratio: 1.562041e-01	ci left: 1.136989e-03	ci right 1.331494e-03	k: 628	n:510000
Cons ci ratio: 1.322983e-03	ci left: 9.444713e-01	ci right 9.457236e-01	k: 482001	n:510000
KS ci ratio: 1.562041e-01	ci left: 1.136989e-03	ci right 1.331494e-03	k: 628	n:510000
LRP10   510000 perm   201 sec   (2532 perm/sec)   p_kst 1.231373e-03   p_cons 9.451000e-01   p_joint 1.231373e-03

Joint ci ratio: 1.547351e-01	ci left: 1.137303e-03	ci right 1.329862e-03	k: 640	n:520000
Cons ci ratio: 1.309496e-03	ci left: 9.445335e-01	ci right 9.457731e-01	k: 491481	n:520000
KS ci ratio: 1.547351e-01	ci left: 1.137303e-03	ci right 1.329862e-03	k: 640	n:520000
LRP10   520000 perm   207 sec   (2506 perm/sec)   p_kst 1.230769e-03   p_cons 9.451558e-01   p_joint 1.230769e-03

Joint ci ratio: 1.535424e-01	ci left: 1.133984e-03	ci right 1.324366e-03	k: 650	n:530000
Cons ci ratio: 1.296411e-03	ci left: 9.445934e-01	ci right 9.458206e-01	k: 500961	n:530000
KS ci ratio: 1.535424e-01	ci left: 1.133984e-03	ci right 1.324366e-03	k: 650	n:530000
LRP10   530000 perm   214 sec   (2481 perm/sec)   p_kst 1.226415e-03   p_cons 9.452094e-01   p_joint 1.226415e-03

Joint ci ratio: 1.518031e-01	ci left: 1.139701e-03	ci right 1.328678e-03	k: 665	n:540000
Cons ci ratio: 1.284261e-03	ci left: 9.446064e-01	ci right 9.458221e-01	k: 510417	n:540000
KS ci ratio: 1.518031e-01	ci left: 1.139701e-03	ci right 1.328678e-03	k: 665	n:540000
LRP10   540000 perm   220 sec   (2455 perm/sec)   p_kst 1.231481e-03   p_cons 9.452167e-01   p_joint 1.231481e-03

Joint ci ratio: 1.500113e-01	ci left: 1.146972e-03	ci right 1.334709e-03	k: 681	n:550000
Cons ci ratio: 1.272089e-03	ci left: 9.446483e-01	ci right 9.458525e-01	k: 519889	n:550000
KS ci ratio: 1.500113e-01	ci left: 1.146972e-03	ci right 1.334709e-03	k: 681	n:550000
LRP10   550000 perm   226 sec   (2430 perm/sec)   p_kst 1.238182e-03   p_cons 9.452527e-01   p_joint 1.238182e-03

Joint ci ratio: 1.490317e-01	ci left: 1.141960e-03	ci right 1.327547e-03	k: 690	n:560000
Cons ci ratio: 1.261366e-03	ci left: 9.445971e-01	ci right 9.457911e-01	k: 529310	n:560000
KS ci ratio: 1.490317e-01	ci left: 1.141960e-03	ci right 1.327547e-03	k: 690	n:560000
LRP10   560000 perm   233 sec   (2406 perm/sec)   p_kst 1.232143e-03   p_cons 9.451964e-01   p_joint 1.232143e-03

Joint ci ratio: 1.481769e-01	ci left: 1.135439e-03	ci right 1.318814e-03	k: 698	n:570000
Cons ci ratio: 1.250441e-03	ci left: 9.445866e-01	ci right 9.457702e-01	k: 538753	n:570000
KS ci ratio: 1.481769e-01	ci left: 1.135439e-03	ci right 1.318814e-03	k: 698	n:570000
LRP10   570000 perm   239 sec   (2383 perm/sec)   p_kst 1.224561e-03   p_cons 9.451807e-01   p_joint 1.224561e-03

Joint ci ratio: 1.469212e-01	ci left: 1.135788e-03	ci right 1.317528e-03	k: 710	n:580000
Cons ci ratio: 1.239425e-03	ci left: 9.446077e-01	ci right 9.457809e-01	k: 548214	n:580000
KS ci ratio: 1.469212e-01	ci left: 1.135788e-03	ci right 1.317528e-03	k: 710	n:580000
LRP10   580000 perm   246 sec   (2362 perm/sec)   p_kst 1.224138e-03   p_cons 9.451966e-01   p_joint 1.224138e-03

Joint ci ratio: 1.451951e-01	ci left: 1.144299e-03	ci right 1.325063e-03	k: 727	n:590000
Cons ci ratio: 1.229097e-03	ci left: 9.445941e-01	ci right 9.457575e-01	k: 557655	n:590000
KS ci ratio: 1.451951e-01	ci left: 1.144299e-03	ci right 1.325063e-03	k: 727	n:590000
LRP10   590000 perm   252 sec   (2342 perm/sec)   p_kst 1.232203e-03   p_cons 9.451780e-01   p_joint 1.232203e-03

Joint ci ratio: 1.446012e-01	ci left: 1.134864e-03	ci right 1.313341e-03	k: 733	n:600000
Cons ci ratio: 1.219042e-03	ci left: 9.445793e-01	ci right 9.457331e-01	k: 567095	n:600000
KS ci ratio: 1.446012e-01	ci left: 1.134864e-03	ci right 1.313341e-03	k: 733	n:600000
LRP10   600000 perm   258 sec   (2322 perm/sec)   p_kst 1.221667e-03   p_cons 9.451583e-01   p_joint 1.221667e-03

Joint ci ratio: 1.432414e-01	ci left: 1.138384e-03	ci right 1.315588e-03	k: 747	n:610000
Cons ci ratio: 1.208694e-03	ci left: 9.446111e-01	ci right 9.457552e-01	k: 576563	n:610000
KS ci ratio: 1.432414e-01	ci left: 1.138384e-03	ci right 1.315588e-03	k: 747	n:610000
LRP10   610000 perm   265 sec   (2302 perm/sec)   p_kst 1.224590e-03   p_cons 9.451852e-01   p_joint 1.224590e-03

Joint ci ratio: 1.418261e-01	ci left: 1.143354e-03	ci right 1.319424e-03	k: 762	n:620000
Cons ci ratio: 1.199837e-03	ci left: 9.445350e-01	ci right 9.456705e-01	k: 585965	n:620000
KS ci ratio: 1.418261e-01	ci left: 1.143354e-03	ci right 1.319424e-03	k: 762	n:620000
LRP10   620000 perm   271 sec   (2284 perm/sec)   p_kst 1.229032e-03   p_cons 9.451048e-01   p_joint 1.229032e-03

Joint ci ratio: 1.409973e-01	ci left: 1.138986e-03	ci right 1.313272e-03	k: 771	n:630000
Cons ci ratio: 1.189986e-03	ci left: 9.445650e-01	ci right 9.456912e-01	k: 595432	n:630000
KS ci ratio: 1.409973e-01	ci left: 1.138986e-03	ci right 1.313272e-03	k: 771	n:630000
LRP10   630000 perm   278 sec   (2265 perm/sec)   p_kst 1.223810e-03   p_cons 9.451302e-01   p_joint 1.223810e-03

Joint ci ratio: 1.400035e-01	ci left: 1.137772e-03	ci right 1.310543e-03	k: 782	n:640000
Cons ci ratio: 1.180604e-03	ci left: 9.445737e-01	ci right 9.456910e-01	k: 604886	n:640000
KS ci ratio: 1.400035e-01	ci left: 1.137772e-03	ci right 1.310543e-03	k: 782	n:640000
LRP10   640000 perm   285 sec   (2246 perm/sec)   p_kst 1.221875e-03   p_cons 9.451344e-01   p_joint 1.221875e-03

Joint ci ratio: 1.388555e-01	ci left: 1.139571e-03	ci right 1.311078e-03	k: 795	n:650000
Cons ci ratio: 1.171441e-03	ci left: 9.445821e-01	ci right 9.456908e-01	k: 614340	n:650000
KS ci ratio: 1.388555e-01	ci left: 1.139571e-03	ci right 1.311078e-03	k: 795	n:650000
LRP10   650000 perm   292 sec   (2227 perm/sec)   p_kst 1.223077e-03   p_cons 9.451385e-01   p_joint 1.223077e-03

Joint ci ratio: 1.378206e-01	ci left: 1.139857e-03	ci right 1.310024e-03	k: 807	n:660000
Cons ci ratio: 1.162794e-03	ci left: 9.445630e-01	ci right 9.456634e-01	k: 623776	n:660000
KS ci ratio: 1.378206e-01	ci left: 1.139857e-03	ci right 1.310024e-03	k: 807	n:660000
LRP10   660000 perm   299 sec   (2208 perm/sec)   p_kst 1.222727e-03   p_cons 9.451152e-01   p_joint 1.222727e-03

Joint ci ratio: 1.359808e-01	ci left: 1.154556e-03	ci right 1.324430e-03	k: 829	n:670000
Cons ci ratio: 1.153936e-03	ci left: 9.445804e-01	ci right 9.456725e-01	k: 633236	n:670000
KS ci ratio: 1.359808e-01	ci left: 1.154556e-03	ci right 1.324430e-03	k: 829	n:670000
LRP10   670000 perm   306 sec   (2189 perm/sec)   p_kst 1.237313e-03   p_cons 9.451284e-01   p_joint 1.237313e-03

Joint ci ratio: 1.350084e-01	ci left: 1.154626e-03	ci right 1.323198e-03	k: 841	n:680000
Cons ci ratio: 1.145002e-03	ci left: 9.446224e-01	ci right 9.457061e-01	k: 642713	n:680000
KS ci ratio: 1.350084e-01	ci left: 1.154626e-03	ci right 1.323198e-03	k: 841	n:680000
LRP10   680000 perm   313 sec   (2170 perm/sec)   p_kst 1.236765e-03   p_cons 9.451662e-01   p_joint 1.236765e-03

Joint ci ratio: 1.340565e-01	ci left: 1.154698e-03	ci right 1.321998e-03	k: 853	n:690000
Cons ci ratio: 1.136637e-03	ci left: 9.446298e-01	ci right 9.457056e-01	k: 652167	n:690000
KS ci ratio: 1.340565e-01	ci left: 1.154698e-03	ci right 1.321998e-03	k: 853	n:690000
LRP10   690000 perm   321 sec   (2152 perm/sec)   p_kst 1.236232e-03   p_cons 9.451696e-01   p_joint 1.236232e-03

Joint ci ratio: 1.328942e-01	ci left: 1.158916e-03	ci right 1.325256e-03	k: 868	n:700000
Cons ci ratio: 1.129044e-03	ci left: 9.445825e-01	ci right 9.456510e-01	k: 661583	n:700000
KS ci ratio: 1.328942e-01	ci left: 1.158916e-03	ci right 1.325256e-03	k: 868	n:700000
LRP10   700000 perm   328 sec   (2134 perm/sec)   p_kst 1.240000e-03   p_cons 9.451186e-01   p_joint 1.240000e-03

Joint ci ratio: 1.319861e-01	ci left: 1.158935e-03	ci right 1.324051e-03	k: 880	n:710000
Cons ci ratio: 1.120672e-03	ci left: 9.446228e-01	ci right 9.456834e-01	k: 671060	n:710000
KS ci ratio: 1.319861e-01	ci left: 1.158935e-03	ci right 1.324051e-03	k: 880	n:710000
LRP10   710000 perm   336 sec   (2116 perm/sec)   p_kst 1.239437e-03   p_cons 9.451549e-01   p_joint 1.239437e-03

Joint ci ratio: 1.308033e-01	ci left: 1.164330e-03	ci right 1.328614e-03	k: 896	n:720000
Cons ci ratio: 1.113109e-03	ci left: 9.446035e-01	ci right 9.456568e-01	k: 680495	n:720000
KS ci ratio: 1.308033e-01	ci left: 1.164330e-03	ci right 1.328614e-03	k: 896	n:720000
LRP10   720000 perm   343 sec   (2098 perm/sec)   p_kst 1.244444e-03   p_cons 9.451319e-01   p_joint 1.244444e-03

Joint ci ratio: 1.297942e-01	ci left: 1.166934e-03	ci right 1.330216e-03	k: 910	n:730000
Cons ci ratio: 1.105828e-03	ci left: 9.445723e-01	ci right 9.456187e-01	k: 689921	n:730000
KS ci ratio: 1.297942e-01	ci left: 1.166934e-03	ci right 1.330216e-03	k: 910	n:730000
LRP10   730000 perm   351 sec   (2081 perm/sec)   p_kst 1.246575e-03   p_cons 9.450973e-01   p_joint 1.246575e-03

Joint ci ratio: 1.288779e-01	ci left: 1.168163e-03	ci right 1.330376e-03	k: 923	n:740000
Cons ci ratio: 1.097973e-03	ci left: 9.446098e-01	ci right 9.456489e-01	k: 699397	n:740000
KS ci ratio: 1.288779e-01	ci left: 1.168163e-03	ci right 1.330376e-03	k: 923	n:740000
LRP10   740000 perm   358 sec   (2065 perm/sec)   p_kst 1.247297e-03   p_cons 9.451311e-01   p_joint 1.247297e-03

Joint ci ratio: 1.282551e-01	ci left: 1.164202e-03	ci right 1.325024e-03	k: 932	n:750000
Cons ci ratio: 1.090324e-03	ci left: 9.446424e-01	ci right 9.456742e-01	k: 708870	n:750000
KS ci ratio: 1.282551e-01	ci left: 1.164202e-03	ci right 1.325024e-03	k: 932	n:750000
LRP10   750000 perm   366 sec   (2048 perm/sec)   p_kst 1.242667e-03   p_cons 9.451600e-01   p_joint 1.242667e-03

Joint ci ratio: 1.275058e-01	ci left: 1.162894e-03	ci right 1.322526e-03	k: 943	n:760000
Cons ci ratio: 1.083190e-03	ci left: 9.446397e-01	ci right 9.456648e-01	k: 718317	n:760000
KS ci ratio: 1.275058e-01	ci left: 1.162894e-03	ci right 1.322526e-03	k: 943	n:760000
LRP10   760000 perm   374 sec   (2032 perm/sec)   p_kst 1.240789e-03   p_cons 9.451539e-01   p_joint 1.240789e-03

Joint ci ratio: 1.265045e-01	ci left: 1.166653e-03	ci right 1.325449e-03	k: 958	n:770000
Cons ci ratio: 1.076275e-03	ci left: 9.446293e-01	ci right 9.456478e-01	k: 727758	n:770000
KS ci ratio: 1.265045e-01	ci left: 1.166653e-03	ci right 1.325449e-03	k: 958	n:770000
LRP10   770000 perm   382 sec   (2016 perm/sec)   p_kst 1.244156e-03   p_cons 9.451403e-01   p_joint 1.244156e-03

Joint ci ratio: 1.261766e-01	ci left: 1.157903e-03	ci right 1.315069e-03	k: 963	n:780000
Cons ci ratio: 1.069465e-03	ci left: 9.446218e-01	ci right 9.456339e-01	k: 737201	n:780000
KS ci ratio: 1.261766e-01	ci left: 1.157903e-03	ci right 1.315069e-03	k: 963	n:780000
LRP10   780000 perm   390 sec   (2000 perm/sec)   p_kst 1.234615e-03   p_cons 9.451295e-01   p_joint 1.234615e-03

Joint ci ratio: 1.254629e-01	ci left: 1.156732e-03	ci right 1.312785e-03	k: 974	n:790000
Cons ci ratio: 1.062562e-03	ci left: 9.446361e-01	ci right 9.456416e-01	k: 746661	n:790000
KS ci ratio: 1.254629e-01	ci left: 1.156732e-03	ci right 1.312785e-03	k: 974	n:790000
LRP10   790000 perm   398 sec   (1983 perm/sec)   p_kst 1.232911e-03   p_cons 9.451405e-01   p_joint 1.232911e-03

Joint ci ratio: 1.248246e-01	ci left: 1.154382e-03	ci right 1.309266e-03	k: 984	n:800000
Cons ci ratio: 1.055574e-03	ci left: 9.446714e-01	ci right 9.456703e-01	k: 756138	n:800000
KS ci ratio: 1.248246e-01	ci left: 1.154382e-03	ci right 1.309266e-03	k: 984	n:800000
LRP10   800000 perm   407 sec   (1968 perm/sec)   p_kst 1.230000e-03   p_cons 9.451725e-01   p_joint 1.230000e-03

Joint ci ratio: 1.240711e-01	ci left: 1.154484e-03	ci right 1.308378e-03	k: 996	n:810000
Cons ci ratio: 1.049259e-03	ci left: 9.446526e-01	ci right 9.456455e-01	k: 765572	n:810000
KS ci ratio: 1.240711e-01	ci left: 1.154484e-03	ci right 1.308378e-03	k: 996	n:810000
LRP10   810000 perm   415 sec   (1952 perm/sec)   p_kst 1.229630e-03   p_cons 9.451506e-01   p_joint 1.229630e-03

Joint ci ratio: 1.233312e-01	ci left: 1.154586e-03	ci right 1.307509e-03	k: 1008	n:820000
Cons ci ratio: 1.042602e-03	ci left: 9.446795e-01	ci right 9.456661e-01	k: 775043	n:820000
KS ci ratio: 1.233312e-01	ci left: 1.154586e-03	ci right 1.307509e-03	k: 1008	n:820000
LRP10   820000 perm   423 sec   (1937 perm/sec)   p_kst 1.229268e-03   p_cons 9.451744e-01   p_joint 1.229268e-03

Joint ci ratio: 1.223645e-01	ci left: 1.159360e-03	ci right 1.311625e-03	k: 1024	n:830000
Cons ci ratio: 1.036757e-03	ci left: 9.446368e-01	ci right 9.456179e-01	k: 784457	n:830000
KS ci ratio: 1.223645e-01	ci left: 1.159360e-03	ci right 1.311625e-03	k: 1024	n:830000
LRP10   830000 perm   432 sec   (1923 perm/sec)   p_kst 1.233735e-03   p_cons 9.451289e-01   p_joint 1.233735e-03

Joint ci ratio: 1.218901e-01	ci left: 1.154791e-03	ci right 1.305825e-03	k: 1032	n:840000
Cons ci ratio: 1.030653e-03	ci left: 9.446311e-01	ci right 9.456063e-01	k: 793901	n:840000
KS ci ratio: 1.218901e-01	ci left: 1.154791e-03	ci right 1.305825e-03	k: 1032	n:840000
LRP10   840000 perm   440 sec   (1908 perm/sec)   p_kst 1.228571e-03   p_cons 9.451202e-01   p_joint 1.228571e-03

Joint ci ratio: 1.208414e-01	ci left: 1.161739e-03	ci right 1.312281e-03	k: 1050	n:850000
Cons ci ratio: 1.024877e-03	ci left: 9.446030e-01	ci right 9.455728e-01	k: 803326	n:850000
KS ci ratio: 1.208414e-01	ci left: 1.161739e-03	ci right 1.312281e-03	k: 1050	n:850000
LRP10   850000 perm   449 sec   (1894 perm/sec)   p_kst 1.235294e-03   p_cons 9.450894e-01   p_joint 1.235294e-03

Joint ci ratio: 1.203275e-01	ci left: 1.158380e-03	ci right 1.307803e-03	k: 1059	n:860000
Cons ci ratio: 1.018649e-03	ci left: 9.446317e-01	ci right 9.455956e-01	k: 812799	n:860000
KS ci ratio: 1.203275e-01	ci left: 1.158380e-03	ci right 1.307803e-03	k: 1059	n:860000
LRP10   860000 perm   458 sec   (1879 perm/sec)   p_kst 1.231395e-03   p_cons 9.451151e-01   p_joint 1.231395e-03

Joint ci ratio: 1.194849e-01	ci left: 1.161789e-03	ci right 1.310529e-03	k: 1074	n:870000
Cons ci ratio: 1.012510e-03	ci left: 9.446620e-01	ci right 9.456201e-01	k: 822274	n:870000
KS ci ratio: 1.194849e-01	ci left: 1.161789e-03	ci right 1.310529e-03	k: 1074	n:870000
LRP10   870000 perm   467 sec   (1864 perm/sec)   p_kst 1.234483e-03   p_cons 9.451425e-01   p_joint 1.234483e-03

Joint ci ratio: 1.190431e-01	ci left: 1.157407e-03	ci right 1.304999e-03	k: 1082	n:880000
Cons ci ratio: 1.006293e-03	ci left: 9.447110e-01	ci right 9.456633e-01	k: 831766	n:880000
KS ci ratio: 1.190431e-01	ci left: 1.157407e-03	ci right 1.304999e-03	k: 1082	n:880000
LRP10   880000 perm   476 sec   (1850 perm/sec)   p_kst 1.229545e-03   p_cons 9.451886e-01   p_joint 1.229545e-03

Joint ci ratio: 1.183349e-01	ci left: 1.158575e-03	ci right 1.305376e-03	k: 1095	n:890000
Cons ci ratio: 1.000589e-03	ci left: 9.447173e-01	ci right 9.456641e-01	k: 841221	n:890000
KS ci ratio: 1.183349e-01	ci left: 1.158575e-03	ci right 1.305376e-03	k: 1095	n:890000
LRP10   890000 perm   485 sec   (1836 perm/sec)   p_kst 1.230337e-03   p_cons 9.451921e-01   p_joint 1.230337e-03

Joint ci ratio: 1.176393e-01	ci left: 1.159720e-03	ci right 1.305742e-03	k: 1108	n:900000
Cons ci ratio: 9.953556e-04	ci left: 9.446843e-01	ci right 9.456262e-01	k: 850641	n:900000
KS ci ratio: 1.176393e-01	ci left: 1.159720e-03	ci right 1.305742e-03	k: 1108	n:900000
LRP10   900000 perm   494 sec   (1823 perm/sec)   p_kst 1.231111e-03   p_cons 9.451567e-01   p_joint 1.231111e-03

Joint ci ratio: 1.171126e-01	ci left: 1.157643e-03	ci right 1.302705e-03	k: 1118	n:910000
Cons ci ratio: 9.897829e-04	ci left: 9.446962e-01	ci right 9.456328e-01	k: 860101	n:910000
KS ci ratio: 1.171126e-01	ci left: 1.157643e-03	ci right 1.302705e-03	k: 1118	n:910000
LRP10   910000 perm   503 sec   (1810 perm/sec)   p_kst 1.228571e-03   p_cons 9.451659e-01   p_joint 1.228571e-03

Joint ci ratio: 1.165413e-01	ci left: 1.156667e-03	ci right 1.300851e-03	k: 1129	n:920000
Cons ci ratio: 9.845195e-04	ci left: 9.446850e-01	ci right 9.456166e-01	k: 869540	n:920000
KS ci ratio: 1.165413e-01	ci left: 1.156667e-03	ci right 1.300851e-03	k: 1129	n:920000
LRP10   920000 perm   512 sec   (1797 perm/sec)   p_kst 1.227174e-03   p_cons 9.451522e-01   p_joint 1.227174e-03

Joint ci ratio: 1.160291e-01	ci left: 1.154669e-03	ci right 1.297929e-03	k: 1139	n:930000
Cons ci ratio: 9.793697e-04	ci left: 9.446708e-01	ci right 9.455974e-01	k: 878976	n:930000
KS ci ratio: 1.160291e-01	ci left: 1.154669e-03	ci right 1.297929e-03	k: 1139	n:930000
LRP10   930000 perm   521 sec   (1785 perm/sec)   p_kst 1.224731e-03   p_cons 9.451355e-01   p_joint 1.224731e-03

Joint ci ratio: 1.153731e-01	ci left: 1.155815e-03	ci right 1.298351e-03	k: 1152	n:940000
Cons ci ratio: 9.742097e-04	ci left: 9.446665e-01	ci right 9.455882e-01	k: 888421	n:940000
KS ci ratio: 1.153731e-01	ci left: 1.155815e-03	ci right 1.298351e-03	k: 1152	n:940000
LRP10   940000 perm   530 sec   (1773 perm/sec)   p_kst 1.225532e-03   p_cons 9.451287e-01   p_joint 1.225532e-03

Joint ci ratio: 1.149257e-01	ci left: 1.152849e-03	ci right 1.294431e-03	k: 1161	n:950000
Cons ci ratio: 9.689928e-04	ci left: 9.446771e-01	ci right 9.455939e-01	k: 897880	n:950000
KS ci ratio: 1.149257e-01	ci left: 1.152849e-03	ci right 1.294431e-03	k: 1161	n:950000
LRP10   950000 perm   540 sec   (1760 perm/sec)   p_kst 1.222105e-03   p_cons 9.451368e-01   p_joint 1.222105e-03

Joint ci ratio: 1.141908e-01	ci left: 1.156018e-03	ci right 1.297019e-03	k: 1176	n:960000
Cons ci ratio: 9.637523e-04	ci left: 9.446989e-01	ci right 9.456109e-01	k: 907350	n:960000
KS ci ratio: 1.141908e-01	ci left: 1.156018e-03	ci right 1.297019e-03	k: 1176	n:960000
LRP10   960000 perm   549 sec   (1749 perm/sec)   p_kst 1.225000e-03   p_cons 9.451563e-01   p_joint 1.225000e-03

Joint ci ratio: 1.137089e-01	ci left: 1.154115e-03	ci right 1.294251e-03	k: 1186	n:970000
Cons ci ratio: 9.582906e-04	ci left: 9.447535e-01	ci right 9.456603e-01	k: 916852	n:970000
KS ci ratio: 1.137089e-01	ci left: 1.154115e-03	ci right 1.294251e-03	k: 1186	n:970000
LRP10   970000 perm   558 sec   (1737 perm/sec)   p_kst 1.222680e-03   p_cons 9.452082e-01   p_joint 1.222680e-03

Joint ci ratio: 1.132331e-01	ci left: 1.152253e-03	ci right 1.291538e-03	k: 1196	n:980000
Cons ci ratio: 9.534459e-04	ci left: 9.447496e-01	ci right 9.456518e-01	k: 926298	n:980000
KS ci ratio: 1.132331e-01	ci left: 1.152253e-03	ci right 1.291538e-03	k: 1196	n:980000
LRP10   980000 perm   568 sec   (1725 perm/sec)   p_kst 1.220408e-03   p_cons 9.452020e-01   p_joint 1.220408e-03

Joint ci ratio: 1.128568e-01	ci left: 1.148466e-03	ci right 1.286802e-03	k: 1204	n:990000
Cons ci ratio: 9.484149e-04	ci left: 9.447742e-01	ci right 9.456717e-01	k: 935772	n:990000
KS ci ratio: 1.128568e-01	ci left: 1.148466e-03	ci right 1.286802e-03	k: 1204	n:990000
LRP10   990000 perm   578 sec   (1713 perm/sec)   p_kst 1.216162e-03   p_cons 9.452242e-01   p_joint 1.216162e-03

Joint ci ratio: 1.124379e-01	ci left: 1.145728e-03	ci right 1.283187e-03	k: 1213	n:1000000
Cons ci ratio: 9.435810e-04	ci left: 9.447853e-01	ci right 9.456782e-01	k: 945233	n:1000000
KS ci ratio: 1.124379e-01	ci left: 1.145728e-03	ci right 1.283187e-03	k: 1213	n:1000000
LRP10   1000000 perm   588 sec   (1702 perm/sec)   p_kst 1.213000e-03   p_cons 9.452330e-01   p_joint 1.213000e-03

Joint ci ratio: 1.120236e-01	ci left: 1.143045e-03	ci right 1.279643e-03	k: 1222	n:1010000
Cons ci ratio: 9.391345e-04	ci left: 9.447613e-01	ci right 9.456500e-01	k: 954659	n:1010000
KS ci ratio: 1.120236e-01	ci left: 1.143045e-03	ci right 1.279643e-03	k: 1222	n:1010000
LRP10   1010000 perm   598 sec   (1690 perm/sec)   p_kst 1.209901e-03   p_cons 9.452069e-01   p_joint 1.209901e-03

Joint ci ratio: 1.116138e-01	ci left: 1.140415e-03	ci right 1.276168e-03	k: 1231	n:1020000
Cons ci ratio: 9.346351e-04	ci left: 9.447507e-01	ci right 9.456350e-01	k: 964098	n:1020000
KS ci ratio: 1.116138e-01	ci left: 1.140415e-03	ci right 1.276168e-03	k: 1231	n:1020000
LRP10   1020000 perm   608 sec   (1678 perm/sec)   p_kst 1.206863e-03   p_cons 9.451941e-01   p_joint 1.206863e-03

Joint ci ratio: 1.110742e-01	ci left: 1.140669e-03	ci right 1.275753e-03	k: 1243	n:1030000
Cons ci ratio: 9.300951e-04	ci left: 9.447519e-01	ci right 9.456320e-01	k: 973549	n:1030000
KS ci ratio: 1.110742e-01	ci left: 1.140669e-03	ci right 1.275753e-03	k: 1243	n:1030000
LRP10   1030000 perm   618 sec   (1667 perm/sec)   p_kst 1.206796e-03   p_cons 9.451932e-01   p_joint 1.206796e-03

Joint ci ratio: 1.106306e-01	ci left: 1.139050e-03	ci right 1.273368e-03	k: 1253	n:1040000
Cons ci ratio: 9.257065e-04	ci left: 9.447435e-01	ci right 9.456194e-01	k: 982990	n:1040000
KS ci ratio: 1.106306e-01	ci left: 1.139050e-03	ci right 1.273368e-03	k: 1253	n:1040000
LRP10   1040000 perm   628 sec   (1656 perm/sec)   p_kst 1.204808e-03   p_cons 9.451827e-01   p_joint 1.204808e-03

Joint ci ratio: 1.096292e-01	ci left: 1.149504e-03	ci right 1.283748e-03	k: 1276	n:1050000
Cons ci ratio: 9.212101e-04	ci left: 9.447544e-01	ci right 9.456260e-01	k: 992451	n:1050000
KS ci ratio: 1.096292e-01	ci left: 1.149504e-03	ci right 1.283748e-03	k: 1276	n:1050000
LRP10   1050000 perm   638 sec   (1645 perm/sec)   p_kst 1.215238e-03   p_cons 9.451914e-01   p_joint 1.215238e-03

Joint ci ratio: 1.091177e-01	ci left: 1.149670e-03	ci right 1.283268e-03	k: 1288	n:1060000
Cons ci ratio: 9.166367e-04	ci left: 9.447811e-01	ci right 9.456485e-01	k: 1001929	n:1060000
KS ci ratio: 1.091177e-01	ci left: 1.149670e-03	ci right 1.283268e-03	k: 1288	n:1060000
LRP10   1060000 perm   648 sec   (1635 perm/sec)   p_kst 1.215094e-03   p_cons 9.452160e-01   p_joint 1.215094e-03

Joint ci ratio: 1.083634e-01	ci left: 1.155291e-03	ci right 1.288554e-03	k: 1306	n:1070000
Cons ci ratio: 9.122457e-04	ci left: 9.447943e-01	ci right 9.456575e-01	k: 1011393	n:1070000
KS ci ratio: 1.083634e-01	ci left: 1.155291e-03	ci right 1.288554e-03	k: 1306	n:1070000
LRP10   1070000 perm   659 sec   (1624 perm/sec)   p_kst 1.220561e-03   p_cons 9.452271e-01   p_joint 1.220561e-03

Joint ci ratio: 1.079103e-01	ci left: 1.154503e-03	ci right 1.287084e-03	k: 1317	n:1080000
Cons ci ratio: 9.079254e-04	ci left: 9.448063e-01	ci right 9.456654e-01	k: 1020856	n:1080000
KS ci ratio: 1.079103e-01	ci left: 1.154503e-03	ci right 1.287084e-03	k: 1317	n:1080000
LRP10   1080000 perm   669 sec   (1614 perm/sec)   p_kst 1.219444e-03   p_cons 9.452370e-01   p_joint 1.219444e-03

Joint ci ratio: 1.073820e-01	ci left: 1.155517e-03	ci right 1.287523e-03	k: 1330	n:1090000
Cons ci ratio: 9.036017e-04	ci left: 9.448254e-01	ci right 9.456805e-01	k: 1030327	n:1090000
KS ci ratio: 1.073820e-01	ci left: 1.155517e-03	ci right 1.287523e-03	k: 1330	n:1090000
LRP10   1090000 perm   680 sec   (1603 perm/sec)   p_kst 1.220183e-03   p_cons 9.452541e-01   p_joint 1.220183e-03

Joint ci ratio: 1.069012e-01	ci left: 1.155629e-03	ci right 1.287020e-03	k: 1342	n:1100000
Cons ci ratio: 8.993471e-04	ci left: 9.448433e-01	ci right 9.456943e-01	k: 1039797	n:1100000
KS ci ratio: 1.069012e-01	ci left: 1.155629e-03	ci right 1.287020e-03	k: 1342	n:1100000
LRP10   1100000 perm   690 sec   (1593 perm/sec)   p_kst 1.220000e-03   p_cons 9.452700e-01   p_joint 1.220000e-03

Joint ci ratio: 1.064268e-01	ci left: 1.155741e-03	ci right 1.286524e-03	k: 1354	n:1110000
Cons ci ratio: 8.952220e-04	ci left: 9.448528e-01	ci right 9.456999e-01	k: 1049258	n:1110000
KS ci ratio: 1.064268e-01	ci left: 1.155741e-03	ci right 1.286524e-03	k: 1354	n:1110000
LRP10   1110000 perm   701 sec   (1583 perm/sec)   p_kst 1.219820e-03   p_cons 9.452775e-01   p_joint 1.219820e-03

Joint ci ratio: 1.059587e-01	ci left: 1.155851e-03	ci right 1.286036e-03	k: 1366	n:1120000
Cons ci ratio: 8.914455e-04	ci left: 9.448280e-01	ci right 9.456715e-01	k: 1058681	n:1120000
KS ci ratio: 1.059587e-01	ci left: 1.155851e-03	ci right 1.286036e-03	k: 1366	n:1120000
LRP10   1120000 perm   712 sec   (1574 perm/sec)   p_kst 1.219643e-03   p_cons 9.452509e-01   p_joint 1.219643e-03

Joint ci ratio: 1.055349e-01	ci left: 1.155099e-03	ci right 1.284647e-03	k: 1377	n:1130000
Cons ci ratio: 8.872077e-04	ci left: 9.448632e-01	ci right 9.457027e-01	k: 1068171	n:1130000
KS ci ratio: 1.055349e-01	ci left: 1.155099e-03	ci right 1.284647e-03	k: 1377	n:1130000
LRP10   1130000 perm   722 sec   (1564 perm/sec)   p_kst 1.218584e-03   p_cons 9.452841e-01   p_joint 1.218584e-03

Joint ci ratio: 1.052301e-01	ci left: 1.151799e-03	ci right 1.280581e-03	k: 1385	n:1140000
Cons ci ratio: 8.835238e-04	ci left: 9.448396e-01	ci right 9.456756e-01	k: 1077595	n:1140000
KS ci ratio: 1.052301e-01	ci left: 1.151799e-03	ci right 1.280581e-03	k: 1385	n:1140000
LRP10   1140000 perm   733 sec   (1555 perm/sec)   p_kst 1.214912e-03   p_cons 9.452588e-01   p_joint 1.214912e-03

Joint ci ratio: 1.048151e-01	ci left: 1.151098e-03	ci right 1.279262e-03	k: 1396	n:1150000
Cons ci ratio: 8.795970e-04	ci left: 9.448506e-01	ci right 9.456829e-01	k: 1087058	n:1150000
KS ci ratio: 1.048151e-01	ci left: 1.151098e-03	ci right 1.279262e-03	k: 1396	n:1150000
LRP10   1150000 perm   744 sec   (1545 perm/sec)   p_kst 1.213913e-03   p_cons 9.452678e-01   p_joint 1.213913e-03

Joint ci ratio: 1.043678e-01	ci left: 1.151249e-03	ci right 1.278849e-03	k: 1408	n:1160000
Cons ci ratio: 8.757586e-04	ci left: 9.448570e-01	ci right 9.456856e-01	k: 1096516	n:1160000
KS ci ratio: 1.043678e-01	ci left: 1.151249e-03	ci right 1.278849e-03	k: 1408	n:1160000
LRP10   1160000 perm   756 sec   (1535 perm/sec)   p_kst 1.213793e-03   p_cons 9.452724e-01   p_joint 1.213793e-03

Joint ci ratio: 1.038530e-01	ci left: 1.153063e-03	ci right 1.280196e-03	k: 1422	n:1170000
Cons ci ratio: 8.721500e-04	ci left: 9.448418e-01	ci right 9.456671e-01	k: 1105949	n:1170000
KS ci ratio: 1.038530e-01	ci left: 1.153063e-03	ci right 1.280196e-03	k: 1422	n:1170000
LRP10   1170000 perm   767 sec   (1526 perm/sec)   p_kst 1.215385e-03   p_cons 9.452556e-01   p_joint 1.215385e-03

Joint ci ratio: 1.034179e-01	ci left: 1.153197e-03	ci right 1.279780e-03	k: 1434	n:1180000
Cons ci ratio: 8.685998e-04	ci left: 9.448253e-01	ci right 9.456471e-01	k: 1115380	n:1180000
KS ci ratio: 1.034179e-01	ci left: 1.153197e-03	ci right 1.279780e-03	k: 1434	n:1180000
LRP10   1180000 perm   778 sec   (1517 perm/sec)   p_kst 1.215254e-03   p_cons 9.452373e-01   p_joint 1.215254e-03

Joint ci ratio: 1.032385e-01	ci left: 1.147600e-03	ci right 1.273336e-03	k: 1439	n:1190000
Cons ci ratio: 8.645729e-04	ci left: 9.448714e-01	ci right 9.456895e-01	k: 1124885	n:1190000
KS ci ratio: 1.032385e-01	ci left: 1.147600e-03	ci right 1.273336e-03	k: 1439	n:1190000
LRP10   1190000 perm   789 sec   (1507 perm/sec)   p_kst 1.209244e-03   p_cons 9.452815e-01   p_joint 1.209244e-03

Joint ci ratio: 1.028110e-01	ci left: 1.147779e-03	ci right 1.272982e-03	k: 1451	n:1200000
Cons ci ratio: 8.610380e-04	ci left: 9.448641e-01	ci right 9.456788e-01	k: 1134327	n:1200000
KS ci ratio: 1.028110e-01	ci left: 1.147779e-03	ci right 1.272982e-03	k: 1451	n:1200000
LRP10   1200000 perm   801 sec   (1498 perm/sec)   p_kst 1.209167e-03   p_cons 9.452725e-01   p_joint 1.209167e-03

Joint ci ratio: 1.026700e-01	ci left: 1.141514e-03	ci right 1.265852e-03	k: 1455	n:1210000
Cons ci ratio: 8.575255e-04	ci left: 9.448594e-01	ci right 9.456707e-01	k: 1143772	n:1210000
KS ci ratio: 1.026700e-01	ci left: 1.141514e-03	ci right 1.265852e-03	k: 1455	n:1210000
LRP10   1210000 perm   813 sec   (1489 perm/sec)   p_kst 1.202479e-03   p_cons 9.452661e-01   p_joint 1.202479e-03

Joint ci ratio: 1.021799e-01	ci left: 1.143338e-03	ci right 1.267246e-03	k: 1469	n:1220000
Cons ci ratio: 8.540353e-04	ci left: 9.448572e-01	ci right 9.456653e-01	k: 1153220	n:1220000
KS ci ratio: 1.021799e-01	ci left: 1.143338e-03	ci right 1.267246e-03	k: 1469	n:1220000
LRP10   1220000 perm   824 sec   (1480 perm/sec)   p_kst 1.204098e-03   p_cons 9.452623e-01   p_joint 1.204098e-03

Joint ci ratio: 1.018342e-01	ci left: 1.141966e-03	ci right 1.265280e-03	k: 1479	n:1230000
Cons ci ratio: 8.506208e-04	ci left: 9.448510e-01	ci right 9.456558e-01	k: 1162663	n:1230000
KS ci ratio: 1.018342e-01	ci left: 1.141966e-03	ci right 1.265280e-03	k: 1479	n:1230000
LRP10   1230000 perm   836 sec   (1471 perm/sec)   p_kst 1.202439e-03   p_cons 9.452545e-01   p_joint 1.202439e-03

Joint ci ratio: 1.016629e-01	ci left: 1.136686e-03	ci right 1.259212e-03	k: 1484	n:1240000
Cons ci ratio: 8.466526e-04	ci left: 9.449177e-01	ci right 9.457189e-01	k: 1172196	n:1240000
KS ci ratio: 1.016629e-01	ci left: 1.136686e-03	ci right 1.259212e-03	k: 1484	n:1240000
LRP10   1240000 perm   848 sec   (1462 perm/sec)   p_kst 1.196774e-03   p_cons 9.453194e-01   p_joint 1.196774e-03

Joint ci ratio: 1.013563e-01	ci left: 1.134609e-03	ci right 1.256521e-03	k: 1493	n:1250000
Cons ci ratio: 8.432735e-04	ci left: 9.449176e-01	ci right 9.457155e-01	k: 1181647	n:1250000
KS ci ratio: 1.013563e-01	ci left: 1.134609e-03	ci right 1.256521e-03	k: 1493	n:1250000
LRP10   1250000 perm   861 sec   (1452 perm/sec)   p_kst 1.194400e-03   p_cons 9.453176e-01   p_joint 1.194400e-03

Joint ci ratio: 1.008847e-01	ci left: 1.136435e-03	ci right 1.257940e-03	k: 1507	n:1260000
Cons ci ratio: 8.400119e-04	ci left: 9.449079e-01	ci right 9.457027e-01	k: 1191086	n:1260000
KS ci ratio: 1.008847e-01	ci left: 1.136435e-03	ci right 1.257940e-03	k: 1507	n:1260000
LRP10   1260000 perm   873 sec   (1443 perm/sec)   p_kst 1.196032e-03   p_cons 9.453063e-01   p_joint 1.196032e-03

Joint ci ratio: 1.005188e-01	ci left: 1.135930e-03	ci right 1.256915e-03	k: 1518	n:1270000
Cons ci ratio: 8.368706e-04	ci left: 9.448881e-01	ci right 9.456799e-01	k: 1200512	n:1270000
KS ci ratio: 1.005188e-01	ci left: 1.135930e-03	ci right 1.256915e-03	k: 1518	n:1270000
LRP10   1270000 perm   885 sec   (1434 perm/sec)   p_kst 1.195276e-03   p_cons 9.452850e-01   p_joint 1.195276e-03

Joint ci ratio: 1.001568e-01	ci left: 1.135433e-03	ci right 1.255904e-03	k: 1529	n:1280000
Cons ci ratio: 8.333234e-04	ci left: 9.449235e-01	ci right 9.457120e-01	k: 1210008	n:1280000
KS ci ratio: 1.001568e-01	ci left: 1.135433e-03	ci right 1.255904e-03	k: 1529	n:1280000
LRP10   1280000 perm   898 sec   (1426 perm/sec)   p_kst 1.194531e-03   p_cons 9.453187e-01   p_joint 1.194531e-03

Joint ci ratio: 9.973396e-02	ci left: 1.136457e-03	ci right 1.256498e-03	k: 1542	n:1290000
Cons ci ratio: 8.300261e-04	ci left: 9.449327e-01	ci right 9.457181e-01	k: 1219471	n:1290000
KS ci ratio: 9.973396e-02	ci left: 1.136457e-03	ci right 1.256498e-03	k: 1542	n:1290000
LRP10   1290000 perm   910 sec   (1418 perm/sec)   p_kst 1.195349e-03   p_cons 9.453264e-01   p_joint 1.195349e-03

Outputting figure to mutsig2_images.part000000000098/LRP10.2_2170_1290000_0.0011953_0.94533_0.0011953.png
                gene_name: LRP10
               theta_stop: 0.100 
                    nperm: 1290000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0013 

Current progress: 98 percent done.
LRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
LRP2BP   10000 perm   2 sec   (6354 perm/sec)   p_kst 8.512000e-01   p_cons 2.419000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRP2BP.2_1076_10000_0.8512_0.2419_1.png
                gene_name: LRP2BP
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000098
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 98 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4422147: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000099> was used as the working directory.
Started at Wed Oct 24 17:58:38 2012
Results reported at Wed Oct 24 18:44:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000099.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000099.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 99  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000099.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2770.57 sec.
    Max Memory :      5259 MB
    Max Swap   :      7704 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
99
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 99
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 99: processing genes 8867 - 8957
Calculating significance of each gene.
Using projection method.
8867	LRRC17	1
8868	LRRC18	1
8869	LRRC19	1
8870	LRRC2	1.086450e-01
8871	LRRC20	4.533955e-01
8872	LRRC23	6.599326e-01
8873	LRRC24	1
8874	LRRC25	4.708387e-01
8875	LRRC27	9.603402e-01
8876	LRRC28	1
8877	LRRC29	1
8878	LRRC3	1
8879	LRRC30	1
8880	LRRC31	8.445754e-01
8881	LRRC32	4.108744e-01
8882	LRRC33	1
8883	LRRC34	8.216075e-01
8884	LRRC36	9.691171e-01
8885	LRRC37A2	4.963765e-01
8886	LRRC37A3	9.749329e-01
8887	LRRC37B	9.776856e-01
8888	LRRC39	8.587568e-01
8889	LRRC3B	9.528530e-02
8890	LRRC4	7.668215e-01
8891	LRRC40	7.335098e-02
8892	LRRC41	9.535992e-01
8893	LRRC42	6.749050e-01
8894	LRRC43	8.974812e-01
8895	LRRC45	1
8896	LRRC46	6.788586e-01
8897	LRRC47	6.443562e-01
8898	LRRC48	9.269278e-01
8899	LRRC49	1
8900	LRRC4B	9.758332e-01
8901	LRRC4C	1
8902	LRRC50	4.706337e-01
8903	LRRC52	1
8904	LRRC55	6.295158e-01
8905	LRRC56	8.992716e-01
8906	LRRC57	5.115680e-01
8907	LRRC58	2.798126e-01
8908	LRRC59	3.957169e-01
8909	LRRC6	3.893752e-01
8910	LRRC61	1
8911	LRRC66	3.235833e-02
8912	LRRC67	6.646787e-01
8913	LRRC7	9.318631e-01
8914	LRRC8A	9.903093e-01
8915	LRRC8B	9.550533e-01
8916	LRRC8C	5.437579e-01
8917	LRRC8D	7.764552e-01
8918	LRRC8E	9.557180e-01
8919	LRRCC1	6.876974e-01
8920	LRRFIP1	1
8921	LRRFIP2	9.710628e-01
8922	LRRIQ1	1.438252e-04
8923	LRRIQ3	1.852625e-07
8924	LRRIQ4	4.517862e-01
8925	LRRK1	1
8926	LRRK2	5.440295e-01
8927	LRRN1	8.273877e-01
8928	LRRN2	1.254243e-01
8929	LRRN3	1.850532e-01
8930	LRRN4	6.395447e-01
8931	LRRN4CL	1
8932	LRRTM1	1
8933	LRRTM2	8.788106e-01
8934	LRRTM3	3.090129e-03
8935	LRRTM4	2.437689e-06
8936	LRSAM1	1
8937	LRTM1	7.986572e-01
8938	LRTM2	8.249307e-01
8939	LRTOMT	1
8940	LRWD1	8.408444e-01
8941	LSAMP	7.277125e-01
8942	LSG1	6.363947e-01
8943	LSM1	2.778105e-01
8944	LSM10	1
8945	LSM11	1.629263e-01
8946	LSM12	1
8947	LSM14A	2.401588e-01
8948	LSM14B	7.556463e-01
8949	LSM2	1
8950	LSM3	3.513064e-01
8951	LSM4	1
8952	LSM5	1
8953	LSM6	1
8954	LSM7	1
8955	LSMD1	1
8956	LSP1	4.068710e-03
8957	LSR	9.606250e-01
Done

Running MutSig 2:
Scatter job 99: processing genes 8867 - 8957
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRRC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
LRRC7   10000 perm   2 sec   (4408 perm/sec)   p_kst 8.657000e-01   p_cons 8.030000e-02   p_joint 3.339000e-01

Joint ci ratio: 4.179761e-02	ci left: 2.990205e-01	ci right 3.118361e-01	k: 6108	n:20000
Cons ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
KS ci ratio: 1.081731e-02	ci left: 8.630781e-01	ci right 8.725147e-01	k: 17357	n:20000
LRRC7   20000 perm   7 sec   (3031 perm/sec)   p_kst 8.678500e-01   p_cons 8.015000e-02   p_joint 3.054000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC7.27_4714_20000_0.86785_0.08015_0.3054.png
                gene_name: LRRC7
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
LRRIQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
KS ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
LRRIQ1   10000 perm   2 sec   (4474 perm/sec)   p_kst 9.410000e-02   p_cons 2.060000e-02   p_joint 1.240000e-02

Joint ci ratio: 2.010635e-01	ci left: 1.677277e-02	ci right 2.056900e-02	k: 372	n:20000
Cons ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
KS ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
LRRIQ1   20000 perm   5 sec   (4102 perm/sec)   p_kst 8.805000e-02   p_cons 2.210000e-02   p_joint 1.860000e-02

Joint ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
Cons ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
KS ci ratio: 7.345422e-02	ci left: 8.350646e-02	ci right 8.990717e-02	k: 2600	n:30000
LRRIQ1   30000 perm   8 sec   (3943 perm/sec)   p_kst 8.666667e-02   p_cons 2.263333e-02   p_joint 1.496667e-02

Joint ci ratio: 1.452818e-01	ci left: 1.657503e-02	ci right 1.919562e-02	k: 714	n:40000
Cons ci ratio: 1.230967e-01	ci left: 2.320106e-02	ci right 2.626847e-02	k: 988	n:40000
KS ci ratio: 6.391661e-02	ci left: 8.319620e-02	ci right 8.871409e-02	k: 3437	n:40000
LRRIQ1   40000 perm   10 sec   (3881 perm/sec)   p_kst 8.592500e-02   p_cons 2.470000e-02   p_joint 1.785000e-02

Joint ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
Cons ci ratio: 1.139524e-01	ci left: 2.180102e-02	ci right 2.445474e-02	k: 1155	n:50000
KS ci ratio: 5.714341e-02	ci left: 8.355663e-02	ci right 8.849156e-02	k: 4300	n:50000
LRRIQ1   50000 perm   13 sec   (3822 perm/sec)   p_kst 8.600000e-02   p_cons 2.310000e-02   p_joint 1.614000e-02

Joint ci ratio: 1.379271e-01	ci left: 1.236644e-02	ci right 1.421441e-02	k: 796	n:60000
Cons ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
KS ci ratio: 5.226552e-02	ci left: 8.347195e-02	ci right 8.796821e-02	k: 5142	n:60000
LRRIQ1   60000 perm   16 sec   (3744 perm/sec)   p_kst 8.570000e-02   p_cons 2.331667e-02   p_joint 1.326667e-02

Joint ci ratio: 1.044382e-01	ci left: 1.869726e-02	ci right 2.077140e-02	k: 1380	n:70000
Cons ci ratio: 9.656449e-02	ci left: 2.188824e-02	ci right 2.412297e-02	k: 1609	n:70000
KS ci ratio: 4.796208e-02	ci left: 8.502109e-02	ci right 8.921321e-02	k: 6097	n:70000
LRRIQ1   70000 perm   19 sec   (3684 perm/sec)   p_kst 8.710000e-02   p_cons 2.298571e-02   p_joint 1.971429e-02

Joint ci ratio: 1.089899e-01	ci left: 1.504453e-02	ci right 1.679083e-02	k: 1272	n:80000
Cons ci ratio: 8.916906e-02	ci left: 2.253470e-02	ci right 2.465004e-02	k: 1886	n:80000
KS ci ratio: 4.500659e-02	ci left: 8.465985e-02	ci right 8.857019e-02	k: 6928	n:80000
LRRIQ1   80000 perm   22 sec   (3629 perm/sec)   p_kst 8.660000e-02   p_cons 2.357500e-02   p_joint 1.590000e-02

Joint ci ratio: 1.040233e-01	ci left: 1.472469e-02	ci right 1.635120e-02	k: 1397	n:90000
Cons ci ratio: 8.447533e-02	ci left: 2.237867e-02	ci right 2.436332e-02	k: 2102	n:90000
KS ci ratio: 4.250769e-02	ci left: 8.449524e-02	ci right 8.817592e-02	k: 7769	n:90000
LRRIQ1   90000 perm   25 sec   (3577 perm/sec)   p_kst 8.632222e-02   p_cons 2.335556e-02   p_joint 1.552222e-02

Joint ci ratio: 1.016272e-01	ci left: 1.391444e-02	ci right 1.541391e-02	k: 1465	n:100000
Cons ci ratio: 8.025769e-02	ci left: 2.236405e-02	ci right 2.424374e-02	k: 2329	n:100000
KS ci ratio: 4.039895e-02	ci left: 8.430897e-02	ci right 8.779508e-02	k: 8604	n:100000
LRRIQ1   100000 perm   28 sec   (3527 perm/sec)   p_kst 8.604000e-02   p_cons 2.329000e-02   p_joint 1.465000e-02

Joint ci ratio: 8.884174e-02	ci left: 1.661771e-02	ci right 1.817152e-02	k: 1912	n:110000
Cons ci ratio: 7.489328e-02	ci left: 2.338915e-02	ci right 2.521787e-02	k: 2672	n:110000
KS ci ratio: 3.846668e-02	ci left: 8.460189e-02	ci right 8.792905e-02	k: 9488	n:110000
LRRIQ1   110000 perm   32 sec   (3481 perm/sec)   p_kst 8.625455e-02   p_cons 2.429091e-02   p_joint 1.738182e-02

Outputting figure to mutsig2_images.part000000000099/LRRIQ1.27_5277_110000_0.086255_0.024291_0.017382.png
                gene_name: LRRIQ1
               theta_stop: 0.089 
                    nperm: 110000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 4 percent done.
LRRTM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
KS ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
LRRTM4   10000 perm   2 sec   (5121 perm/sec)   p_kst 2.023000e-01   p_cons 3.091000e-01   p_joint 2.819000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM4.25_1791_10000_0.2023_0.3091_0.2819.png
                gene_name: LRRTM4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 5 percent done.
LRRC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
Cons ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
KS ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
LRRC66   10000 perm   2 sec   (4918 perm/sec)   p_kst 1.686000e-01   p_cons 3.956000e-01   p_joint 2.388000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC66.19_2659_10000_0.1686_0.3956_0.2388.png
                gene_name: LRRC66
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
LRRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
LRRK2   10000 perm   2 sec   (4045 perm/sec)   p_kst 5.738000e-01   p_cons 4.156000e-01   p_joint 6.176000e-01

Outputting figure to mutsig2_images.part000000000099/LRRK2.18_7788_10000_0.5738_0.4156_0.6176.png
                gene_name: LRRK2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 9 percent done.
LRRIQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
Cons ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
KS ci ratio: 1.852876e-02	ci left: 8.096859e-01	ci right 8.249288e-01	k: 8174	n:10000
LRRIQ3   10000 perm   2 sec   (5263 perm/sec)   p_kst 8.174000e-01   p_cons 8.547000e-01   p_joint 9.593000e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ3.17_1903_10000_0.8174_0.8547_0.9593.png
                gene_name: LRRIQ3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 11 percent done.
LRRC4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
LRRC4C   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.854000e-01   p_cons 4.146000e-01   p_joint 5.618000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4C.16_1927_10000_0.3854_0.4146_0.5618.png
                gene_name: LRRC4C
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 12 percent done.
LRRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
KS ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
LRRN2   10000 perm   2 sec   (5832 perm/sec)   p_kst 9.357000e-01   p_cons 7.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRN2.13_2146_10000_0.9357_0.7542_1.png
                gene_name: LRRN2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
LRRC32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
LRRC32   10000 perm   2 sec   (5360 perm/sec)   p_kst 9.000000e-04   p_cons 2.690000e-01   p_joint 1.360000e-02

Joint ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
Cons ci ratio: 4.767903e-02	ci left: 2.465399e-01	ci right 2.586321e-01	k: 5051	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
LRRC32   20000 perm   4 sec   (4896 perm/sec)   p_kst 8.000000e-04   p_cons 2.525500e-01   p_joint 8.700000e-03

Joint ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
Cons ci ratio: 3.868059e-02	ci left: 2.500751e-01	ci right 2.599724e-01	k: 7650	n:30000
KS ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
LRRC32   30000 perm   6 sec   (4705 perm/sec)   p_kst 7.000000e-04   p_cons 2.550000e-01   p_joint 4.100000e-03

Joint ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
Cons ci ratio: 3.353225e-02	ci left: 2.503611e-01	ci right 2.589245e-01	k: 10185	n:40000
KS ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
LRRC32   40000 perm   9 sec   (4559 perm/sec)   p_kst 7.000000e-04   p_cons 2.546250e-01   p_joint 2.550000e-03

Joint ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
Cons ci ratio: 2.983576e-02	ci left: 2.527958e-01	ci right 2.604724e-01	k: 12831	n:50000
KS ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
LRRC32   50000 perm   11 sec   (4452 perm/sec)   p_kst 7.600000e-04   p_cons 2.566200e-01   p_joint 1.720000e-03

Joint ci ratio: 3.768594e-01	ci left: 1.461708e-03	ci right 2.154575e-03	k: 107	n:60000
Cons ci ratio: 2.736819e-02	ci left: 2.513003e-01	ci right 2.582901e-01	k: 15287	n:60000
KS ci ratio: 5.541361e-01	ci left: 6.042337e-04	ci right 1.079535e-03	k: 49	n:60000
LRRC32   60000 perm   14 sec   (4361 perm/sec)   p_kst 8.166667e-04   p_cons 2.547833e-01   p_joint 1.783333e-03

Joint ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
Cons ci ratio: 2.578811e-02	ci left: 2.449607e-01	ci right 2.513745e-01	k: 17371	n:70000
KS ci ratio: 5.058493e-01	ci left: 6.416819e-04	ci right 1.087091e-03	k: 59	n:70000
LRRC32   70000 perm   16 sec   (4278 perm/sec)   p_kst 8.428571e-04   p_cons 2.481571e-01   p_joint 2.257143e-03

Joint ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
Cons ci ratio: 2.408282e-02	ci left: 2.457822e-01	ci right 2.517860e-01	k: 19902	n:80000
KS ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
LRRC32   80000 perm   19 sec   (4206 perm/sec)   p_kst 8.125000e-04   p_cons 2.487750e-01   p_joint 1.850000e-03

Joint ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
Cons ci ratio: 2.272366e-02	ci left: 2.456572e-01	ci right 2.513146e-01	k: 22363	n:90000
KS ci ratio: 4.494625e-01	ci left: 6.555242e-04	ci right 1.044480e-03	k: 75	n:90000
LRRC32   90000 perm   22 sec   (4135 perm/sec)   p_kst 8.333333e-04   p_cons 2.484778e-01   p_joint 1.744444e-03

Joint ci ratio: 3.106274e-01	ci left: 1.343393e-03	ci right 1.846227e-03	k: 158	n:100000
Cons ci ratio: 2.152925e-02	ci left: 2.462922e-01	ci right 2.516624e-01	k: 24897	n:100000
KS ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
LRRC32   100000 perm   25 sec   (4072 perm/sec)   p_kst 8.000000e-04   p_cons 2.489700e-01   p_joint 1.580000e-03

Joint ci ratio: 3.087117e-01	ci left: 1.238024e-03	ci right 1.697996e-03	k: 160	n:110000
Cons ci ratio: 2.054871e-02	ci left: 2.460299e-01	ci right 2.511470e-01	k: 27344	n:110000
KS ci ratio: 4.177043e-01	ci left: 6.335328e-04	ci right 9.754933e-04	k: 87	n:110000
LRRC32   110000 perm   27 sec   (4005 perm/sec)   p_kst 7.909091e-04   p_cons 2.485818e-01   p_joint 1.454545e-03

Joint ci ratio: 3.146573e-01	ci left: 1.088752e-03	ci right 1.502621e-03	k: 154	n:120000
Cons ci ratio: 1.968264e-02	ci left: 2.459738e-01	ci right 2.508717e-01	k: 29810	n:120000
KS ci ratio: 4.020226e-01	ci left: 6.330580e-04	ci right 9.585176e-04	k: 94	n:120000
LRRC32   120000 perm   30 sec   (3947 perm/sec)   p_kst 7.833333e-04   p_cons 2.484167e-01   p_joint 1.283333e-03

Joint ci ratio: 3.126599e-01	ci left: 1.019169e-03	ci right 1.403636e-03	k: 156	n:130000
Cons ci ratio: 1.891914e-02	ci left: 2.458996e-01	ci right 2.506039e-01	k: 32272	n:130000
KS ci ratio: 3.899015e-01	ci left: 6.259193e-04	ci right 9.355129e-04	k: 100	n:130000
LRRC32   130000 perm   33 sec   (3893 perm/sec)   p_kst 7.692308e-04   p_cons 2.482462e-01   p_joint 1.200000e-03

Joint ci ratio: 3.157077e-01	ci left: 9.266250e-04	ci right 1.280276e-03	k: 153	n:140000
Cons ci ratio: 1.823951e-02	ci left: 2.458107e-01	ci right 2.503426e-01	k: 34730	n:140000
KS ci ratio: 3.824080e-01	ci left: 6.070072e-04	ci right 9.000250e-04	k: 104	n:140000
LRRC32   140000 perm   36 sec   (3838 perm/sec)   p_kst 7.428571e-04   p_cons 2.480714e-01   p_joint 1.092857e-03

Joint ci ratio: 1.771606e-01	ci left: 2.965090e-03	ci right 3.547706e-03	k: 487	n:150000
Cons ci ratio: 1.771945e-02	ci left: 2.438221e-01	ci right 2.481877e-01	k: 36900	n:150000
KS ci ratio: 3.719310e-01	ci left: 6.027482e-04	ci right 8.837984e-04	k: 110	n:150000
LRRC32   150000 perm   40 sec   (3785 perm/sec)   p_kst 7.333333e-04   p_cons 2.460000e-01   p_joint 3.246667e-03

Joint ci ratio: 1.821108e-01	ci left: 2.624534e-03	ci right 3.156233e-03	k: 461	n:160000
Cons ci ratio: 1.715218e-02	ci left: 2.439909e-01	ci right 2.482183e-01	k: 39376	n:160000
KS ci ratio: 3.577101e-01	ci left: 6.161726e-04	ci right 8.899427e-04	k: 119	n:160000
LRRC32   160000 perm   43 sec   (3732 perm/sec)   p_kst 7.437500e-04   p_cons 2.461000e-01   p_joint 2.881250e-03

Joint ci ratio: 1.801814e-01	ci left: 2.526294e-03	ci right 3.032076e-03	k: 471	n:170000
Cons ci ratio: 1.663770e-02	ci left: 2.441066e-01	ci right 2.482079e-01	k: 41846	n:170000
KS ci ratio: 3.463508e-01	ci left: 6.228262e-04	ci right 8.887952e-04	k: 127	n:170000
LRRC32   170000 perm   46 sec   (3682 perm/sec)   p_kst 7.470588e-04   p_cons 2.461529e-01   p_joint 2.770588e-03

Joint ci ratio: 1.786835e-01	ci left: 2.428382e-03	ci right 2.910080e-03	k: 479	n:180000
Cons ci ratio: 1.617247e-02	ci left: 2.440838e-01	ci right 2.480689e-01	k: 44293	n:180000
KS ci ratio: 3.323607e-01	ci left: 6.441316e-04	ci right 9.057133e-04	k: 138	n:180000
LRRC32   180000 perm   50 sec   (3635 perm/sec)   p_kst 7.666667e-04   p_cons 2.460722e-01   p_joint 2.661111e-03

Joint ci ratio: 1.788830e-01	ci left: 2.295530e-03	ci right 2.751439e-03	k: 478	n:190000
Cons ci ratio: 1.572859e-02	ci left: 2.444322e-01	ci right 2.483124e-01	k: 46810	n:190000
KS ci ratio: 3.210121e-01	ci left: 6.585475e-04	ci right 9.149748e-04	k: 148	n:190000
LRRC32   190000 perm   53 sec   (3591 perm/sec)   p_kst 7.789474e-04   p_cons 2.463684e-01   p_joint 2.515789e-03

Joint ci ratio: 1.892770e-01	ci left: 1.937460e-03	ci right 2.347184e-03	k: 427	n:200000
Cons ci ratio: 1.533441e-02	ci left: 2.443830e-01	ci right 2.481644e-01	k: 49254	n:200000
KS ci ratio: 3.117345e-01	ci left: 6.670484e-04	ci right 9.177861e-04	k: 157	n:200000
LRRC32   200000 perm   56 sec   (3546 perm/sec)   p_kst 7.850000e-04   p_cons 2.462700e-01   p_joint 2.135000e-03

Joint ci ratio: 1.975523e-01	ci left: 1.686578e-03	ci right 2.060719e-03	k: 392	n:210000
Cons ci ratio: 1.496634e-02	ci left: 2.443919e-01	ci right 2.480818e-01	k: 51709	n:210000
KS ci ratio: 3.023128e-01	ci left: 6.792365e-04	ci right 9.253566e-04	k: 167	n:210000
LRRC32   210000 perm   60 sec   (3502 perm/sec)   p_kst 7.952381e-04   p_cons 2.462333e-01   p_joint 1.866667e-03

Joint ci ratio: 1.915508e-01	ci left: 1.718021e-03	ci right 2.086210e-03	k: 417	n:220000
Cons ci ratio: 1.462678e-02	ci left: 2.443193e-01	ci right 2.479237e-01	k: 54146	n:220000
KS ci ratio: 2.912508e-01	ci left: 7.030566e-04	ci right 9.467692e-04	k: 180	n:220000
LRRC32   220000 perm   64 sec   (3459 perm/sec)   p_kst 8.181818e-04   p_cons 2.461182e-01   p_joint 1.895455e-03

Joint ci ratio: 1.911013e-01	ci left: 1.651598e-03	ci right 2.004625e-03	k: 419	n:230000
Cons ci ratio: 1.430917e-02	ci left: 2.442583e-01	ci right 2.477829e-01	k: 56584	n:230000
KS ci ratio: 2.865416e-01	ci left: 6.966855e-04	ci right 9.335779e-04	k: 186	n:230000
LRRC32   230000 perm   67 sec   (3417 perm/sec)   p_kst 8.086957e-04   p_cons 2.460174e-01   p_joint 1.821739e-03

Joint ci ratio: 1.953476e-01	ci left: 1.511398e-03	ci right 1.842490e-03	k: 401	n:240000
Cons ci ratio: 1.401296e-02	ci left: 2.441616e-01	ci right 2.476112e-01	k: 59012	n:240000
KS ci ratio: 2.835278e-01	ci left: 6.831316e-04	ci right 9.125348e-04	k: 190	n:240000
LRRC32   240000 perm   71 sec   (3376 perm/sec)   p_kst 7.916667e-04   p_cons 2.458833e-01   p_joint 1.670833e-03

Joint ci ratio: 1.931999e-01	ci left: 1.485189e-03	ci right 1.806542e-03	k: 410	n:250000
Cons ci ratio: 1.373101e-02	ci left: 2.441651e-01	ci right 2.475448e-01	k: 61463	n:250000
KS ci ratio: 2.770744e-01	ci left: 6.892766e-04	ci right 9.145567e-04	k: 199	n:250000
LRRC32   250000 perm   75 sec   (3336 perm/sec)   p_kst 7.960000e-04   p_cons 2.458520e-01   p_joint 1.640000e-03

Joint ci ratio: 1.951173e-01	ci left: 1.398787e-03	ci right 1.704805e-03	k: 402	n:260000
Cons ci ratio: 1.345370e-02	ci left: 2.444913e-01	ci right 2.478067e-01	k: 63998	n:260000
KS ci ratio: 2.703959e-01	ci left: 6.985887e-04	ci right 9.204753e-04	k: 209	n:260000
LRRC32   260000 perm   79 sec   (3297 perm/sec)   p_kst 8.038462e-04   p_cons 2.461462e-01   p_joint 1.546154e-03

Joint ci ratio: 1.918146e-01	ci left: 1.396320e-03	ci right 1.696024e-03	k: 416	n:270000
Cons ci ratio: 1.320530e-02	ci left: 2.444355e-01	ci right 2.476885e-01	k: 66436	n:270000
KS ci ratio: 2.647811e-01	ci left: 7.038128e-04	ci right 9.219474e-04	k: 218	n:270000
LRRC32   270000 perm   83 sec   (3259 perm/sec)   p_kst 8.074074e-04   p_cons 2.460593e-01   p_joint 1.540741e-03

Joint ci ratio: 1.925147e-01	ci left: 1.336249e-03	ci right 1.624228e-03	k: 413	n:280000
Cons ci ratio: 1.297080e-02	ci left: 2.443664e-01	ci right 2.475603e-01	k: 68869	n:280000
KS ci ratio: 2.589345e-01	ci left: 7.120474e-04	ci right 9.270732e-04	k: 228	n:280000
LRRC32   280000 perm   87 sec   (3222 perm/sec)   p_kst 8.142857e-04   p_cons 2.459607e-01   p_joint 1.475000e-03

Joint ci ratio: 1.897847e-01	ci left: 1.329570e-03	ci right 1.611578e-03	k: 425	n:290000
Cons ci ratio: 1.273877e-02	ci left: 2.445813e-01	ci right 2.477203e-01	k: 71383	n:290000
KS ci ratio: 2.561546e-01	ci left: 7.036221e-04	ci right 9.134577e-04	k: 233	n:290000
LRRC32   290000 perm   91 sec   (3185 perm/sec)   p_kst 8.034483e-04   p_cons 2.461483e-01   p_joint 1.465517e-03

Joint ci ratio: 1.891237e-01	ci left: 1.294774e-03	ci right 1.568336e-03	k: 428	n:300000
Cons ci ratio: 1.252257e-02	ci left: 2.446692e-01	ci right 2.477557e-01	k: 73863	n:300000
KS ci ratio: 2.518851e-01	ci left: 7.051372e-04	ci right 9.113698e-04	k: 241	n:300000
LRRC32   300000 perm   95 sec   (3149 perm/sec)   p_kst 8.033333e-04   p_cons 2.462100e-01   p_joint 1.426667e-03

Joint ci ratio: 1.953847e-01	ci left: 1.170094e-03	ci right 1.426471e-03	k: 401	n:310000
Cons ci ratio: 1.231050e-02	ci left: 2.449482e-01	ci right 2.479855e-01	k: 76404	n:310000
KS ci ratio: 2.478222e-01	ci left: 7.065816e-04	ci right 9.093896e-04	k: 249	n:310000
LRRC32   310000 perm   100 sec   (3112 perm/sec)   p_kst 8.032258e-04   p_cons 2.464645e-01   p_joint 1.293548e-03

Joint ci ratio: 1.920685e-01	ci left: 1.175157e-03	ci right 1.427763e-03	k: 415	n:320000
Cons ci ratio: 1.212618e-02	ci left: 2.446801e-01	ci right 2.476683e-01	k: 78775	n:320000
KS ci ratio: 2.453817e-01	ci left: 6.991601e-04	ci right 8.975604e-04	k: 254	n:320000
LRRC32   320000 perm   104 sec   (3078 perm/sec)   p_kst 7.937500e-04   p_cons 2.461719e-01   p_joint 1.296875e-03

Joint ci ratio: 1.923039e-01	ci left: 1.136659e-03	ci right 1.381325e-03	k: 414	n:330000
Cons ci ratio: 1.195126e-02	ci left: 2.443861e-01	ci right 2.473274e-01	k: 81132	n:330000
KS ci ratio: 2.439528e-01	ci left: 6.865064e-04	ci right 8.800096e-04	k: 257	n:330000
LRRC32   330000 perm   108 sec   (3046 perm/sec)   p_kst 7.787879e-04   p_cons 2.458545e-01   p_joint 1.254545e-03

Joint ci ratio: 1.898053e-01	ci left: 1.134034e-03	ci right 1.374596e-03	k: 425	n:340000
Cons ci ratio: 1.177546e-02	ci left: 2.443681e-01	ci right 2.472656e-01	k: 83577	n:340000
KS ci ratio: 2.398055e-01	ci left: 6.911816e-04	ci right 8.821985e-04	k: 266	n:340000
LRRC32   340000 perm   113 sec   (3015 perm/sec)   p_kst 7.823529e-04   p_cons 2.458147e-01   p_joint 1.250000e-03

Joint ci ratio: 1.887032e-01	ci left: 1.115241e-03	ci right 1.350285e-03	k: 430	n:350000
Cons ci ratio: 1.161141e-02	ci left: 2.442174e-01	ci right 2.470725e-01	k: 85975	n:350000
KS ci ratio: 2.380305e-01	ci left: 6.821777e-04	ci right 8.691048e-04	k: 270	n:350000
LRRC32   350000 perm   117 sec   (2984 perm/sec)   p_kst 7.714286e-04   p_cons 2.456429e-01   p_joint 1.228571e-03

Joint ci ratio: 1.994155e-01	ci left: 9.653225e-04	ci right 1.181726e-03	k: 385	n:360000
Cons ci ratio: 1.144638e-02	ci left: 2.443221e-01	ci right 2.471375e-01	k: 88462	n:360000
KS ci ratio: 2.341734e-01	ci left: 6.867498e-04	ci right 8.714388e-04	k: 279	n:360000
LRRC32   360000 perm   122 sec   (2953 perm/sec)   p_kst 7.750000e-04   p_cons 2.457278e-01   p_joint 1.069444e-03

Joint ci ratio: 2.034139e-01	ci left: 9.007334e-04	ci right 1.107210e-03	k: 370	n:370000
Cons ci ratio: 1.129594e-02	ci left: 2.441678e-01	ci right 2.469443e-01	k: 90855	n:370000
KS ci ratio: 2.308980e-01	ci left: 6.885511e-04	ci right 8.707653e-04	k: 287	n:370000
LRRC32   370000 perm   127 sec   (2922 perm/sec)   p_kst 7.756757e-04   p_cons 2.455541e-01   p_joint 1.000000e-03

Joint ci ratio: 1.999403e-01	ci left: 9.095133e-04	ci right 1.114008e-03	k: 383	n:380000
Cons ci ratio: 1.114391e-02	ci left: 2.442662e-01	ci right 2.470061e-01	k: 93341	n:380000
KS ci ratio: 2.269901e-01	ci left: 6.952383e-04	ci right 8.756724e-04	k: 297	n:380000
LRRC32   380000 perm   131 sec   (2894 perm/sec)   p_kst 7.815789e-04   p_cons 2.456342e-01   p_joint 1.007895e-03

Joint ci ratio: 1.999429e-01	ci left: 8.861914e-04	ci right 1.085445e-03	k: 383	n:390000
Cons ci ratio: 1.100204e-02	ci left: 2.442190e-01	ci right 2.469233e-01	k: 95772	n:390000
KS ci ratio: 2.232742e-01	ci left: 7.016071e-04	ci right 8.803035e-04	k: 307	n:390000
LRRC32   390000 perm   136 sec   (2866 perm/sec)   p_kst 7.871795e-04   p_cons 2.455692e-01   p_joint 9.820513e-04

Joint ci ratio: 1.973892e-01	ci left: 8.877932e-04	ci right 1.084551e-03	k: 393	n:400000
Cons ci ratio: 1.086069e-02	ci left: 2.443365e-01	ci right 2.470071e-01	k: 98268	n:400000
KS ci ratio: 2.218395e-01	ci left: 6.935091e-04	ci right 8.688530e-04	k: 311	n:400000
LRRC32   400000 perm   141 sec   (2838 perm/sec)   p_kst 7.775000e-04   p_cons 2.456700e-01   p_joint 9.825000e-04

Joint ci ratio: 2.036989e-01	ci left: 8.105383e-04	ci right 9.966316e-04	k: 369	n:410000
Cons ci ratio: 1.073023e-02	ci left: 2.442562e-01	ci right 2.468937e-01	k: 100685	n:410000
KS ci ratio: 2.183670e-01	ci left: 6.996402e-04	ci right 8.733938e-04	k: 321	n:410000
LRRC32   410000 perm   146 sec   (2811 perm/sec)   p_kst 7.829268e-04   p_cons 2.455732e-01   p_joint 9.000000e-04

Joint ci ratio: 2.088489e-01	ci left: 7.505935e-04	ci right 9.278381e-04	k: 351	n:420000
Cons ci ratio: 1.060212e-02	ci left: 2.442584e-01	ci right 2.468642e-01	k: 103135	n:420000
KS ci ratio: 2.157039e-01	ci left: 7.009945e-04	ci right 8.726800e-04	k: 329	n:420000
LRRC32   420000 perm   151 sec   (2783 perm/sec)   p_kst 7.833333e-04   p_cons 2.455595e-01   p_joint 8.357143e-04

Joint ci ratio: 2.076733e-01	ci left: 7.419547e-04	ci right 9.160478e-04	k: 355	n:430000
Cons ci ratio: 1.047953e-02	ci left: 2.442235e-01	ci right 2.467986e-01	k: 105569	n:430000
KS ci ratio: 2.134521e-01	ci left: 7.000965e-04	ci right 8.695378e-04	k: 336	n:430000
LRRC32   430000 perm   156 sec   (2756 perm/sec)   p_kst 7.813953e-04   p_cons 2.455093e-01   p_joint 8.255814e-04

Joint ci ratio: 2.048162e-01	ci left: 7.466458e-04	ci right 9.191277e-04	k: 365	n:440000
Cons ci ratio: 1.036047e-02	ci left: 2.442130e-01	ci right 2.467586e-01	k: 108013	n:440000
KS ci ratio: 2.115773e-01	ci left: 6.970957e-04	ci right 8.641368e-04	k: 342	n:440000
LRRC32   440000 perm   161 sec   (2730 perm/sec)   p_kst 7.772727e-04   p_cons 2.454841e-01   p_joint 8.295455e-04

Joint ci ratio: 1.414222e-01	ci left: 1.583887e-03	ci right 1.827045e-03	k: 766	n:450000
Cons ci ratio: 1.024384e-02	ci left: 2.442586e-01	ci right 2.467758e-01	k: 110482	n:450000
KS ci ratio: 2.097512e-01	ci left: 6.942345e-04	ci right 8.589697e-04	k: 348	n:450000
LRRC32   450000 perm   166 sec   (2704 perm/sec)   p_kst 7.733333e-04   p_cons 2.455156e-01   p_joint 1.702222e-03

Joint ci ratio: 1.427356e-01	ci left: 1.520099e-03	ci right 1.755815e-03	k: 752	n:460000
Cons ci ratio: 1.013522e-02	ci left: 2.441505e-01	ci right 2.466397e-01	k: 112881	n:460000
KS ci ratio: 2.079715e-01	ci left: 6.915036e-04	ci right 8.540213e-04	k: 354	n:460000
LRRC32   460000 perm   172 sec   (2676 perm/sec)   p_kst 7.695652e-04   p_cons 2.453935e-01   p_joint 1.634783e-03

Joint ci ratio: 1.406034e-01	ci left: 1.534959e-03	ci right 1.769126e-03	k: 775	n:470000
Cons ci ratio: 1.003229e-02	ci left: 2.439621e-01	ci right 2.464240e-01	k: 115240	n:470000
KS ci ratio: 2.045422e-01	ci left: 7.010044e-04	ci right 8.626989e-04	k: 366	n:470000
LRRC32   470000 perm   177 sec   (2651 perm/sec)   p_kst 7.787234e-04   p_cons 2.451915e-01   p_joint 1.648936e-03

Joint ci ratio: 1.393524e-01	ci left: 1.531125e-03	ci right 1.762457e-03	k: 789	n:480000
Cons ci ratio: 9.927795e-03	ci left: 2.439543e-01	ci right 2.463904e-01	k: 117682	n:480000
KS ci ratio: 2.031635e-01	ci left: 6.962850e-04	ci right 8.556739e-04	k: 371	n:480000
LRRC32   480000 perm   183 sec   (2626 perm/sec)   p_kst 7.729167e-04   p_cons 2.451708e-01   p_joint 1.643750e-03

Joint ci ratio: 1.383065e-01	ci left: 1.523517e-03	ci right 1.751829e-03	k: 801	n:490000
Cons ci ratio: 9.829748e-03	ci left: 2.438248e-01	ci right 2.462354e-01	k: 120064	n:490000
KS ci ratio: 2.018124e-01	ci left: 6.917616e-04	ci right 8.489322e-04	k: 376	n:490000
LRRC32   490000 perm   188 sec   (2602 perm/sec)   p_kst 7.673469e-04   p_cons 2.450286e-01   p_joint 1.634694e-03

Joint ci ratio: 1.369473e-01	ci left: 1.523944e-03	ci right 1.749893e-03	k: 817	n:500000
Cons ci ratio: 9.731128e-03	ci left: 2.438303e-01	ci right 2.462166e-01	k: 122511	n:500000
KS ci ratio: 1.999646e-01	ci left: 6.912222e-04	ci right 8.466568e-04	k: 383	n:500000
LRRC32   500000 perm   194 sec   (2578 perm/sec)   p_kst 7.660000e-04   p_cons 2.450220e-01   p_joint 1.634000e-03

Joint ci ratio: 1.354647e-01	ci left: 1.528155e-03	ci right 1.752077e-03	k: 835	n:510000
Cons ci ratio: 9.635060e-03	ci left: 2.438495e-01	ci right 2.462123e-01	k: 124965	n:510000
KS ci ratio: 1.986759e-01	ci left: 6.869833e-04	ci right 8.403485e-04	k: 388	n:510000
LRRC32   510000 perm   200 sec   (2555 perm/sec)   p_kst 7.607843e-04   p_cons 2.450294e-01   p_joint 1.637255e-03

Joint ci ratio: 1.350629e-01	ci left: 1.508056e-03	ci right 1.728326e-03	k: 840	n:520000
Cons ci ratio: 9.542577e-03	ci left: 2.438373e-01	ci right 2.461771e-01	k: 127403	n:520000
KS ci ratio: 1.971615e-01	ci left: 6.847387e-04	ci right 8.362976e-04	k: 394	n:520000
LRRC32   520000 perm   205 sec   (2532 perm/sec)   p_kst 7.576923e-04   p_cons 2.450058e-01   p_joint 1.615385e-03

Joint ci ratio: 1.337181e-01	ci left: 1.510600e-03	ci right 1.728869e-03	k: 857	n:530000
Cons ci ratio: 9.452031e-03	ci left: 2.438520e-01	ci right 2.461697e-01	k: 129855	n:530000
KS ci ratio: 1.937565e-01	ci left: 6.969420e-04	ci right 8.482239e-04	k: 408	n:530000
LRRC32   530000 perm   211 sec   (2511 perm/sec)   p_kst 7.698113e-04   p_cons 2.450094e-01   p_joint 1.616981e-03

Joint ci ratio: 1.381447e-01	ci left: 1.386019e-03	ci right 1.593462e-03	k: 803	n:540000
Cons ci ratio: 9.361438e-03	ci left: 2.439680e-01	ci right 2.462644e-01	k: 132362	n:540000
KS ci ratio: 1.918889e-01	ci left: 6.981354e-04	ci right 8.480451e-04	k: 416	n:540000
LRRC32   540000 perm   217 sec   (2489 perm/sec)   p_kst 7.703704e-04   p_cons 2.451148e-01   p_joint 1.487037e-03

Joint ci ratio: 1.391028e-01	ci left: 1.341510e-03	ci right 1.543800e-03	k: 792	n:550000
Cons ci ratio: 9.278960e-03	ci left: 2.438583e-01	ci right 2.461334e-01	k: 134747	n:550000
KS ci ratio: 1.896283e-01	ci left: 7.027557e-04	ci right 8.516750e-04	k: 426	n:550000
LRRC32   550000 perm   223 sec   (2467 perm/sec)   p_kst 7.745455e-04   p_cons 2.449945e-01   p_joint 1.440000e-03

Joint ci ratio: 1.375500e-01	ci left: 1.348585e-03	ci right 1.549486e-03	k: 810	n:560000
Cons ci ratio: 9.196447e-03	ci left: 2.438401e-01	ci right 2.460947e-01	k: 137181	n:560000
KS ci ratio: 1.868051e-01	ci left: 7.123274e-04	ci right 8.607729e-04	k: 439	n:560000
LRRC32   560000 perm   229 sec   (2446 perm/sec)   p_kst 7.839286e-04   p_cons 2.449661e-01   p_joint 1.446429e-03

Joint ci ratio: 1.367937e-01	ci left: 1.340173e-03	ci right 1.538634e-03	k: 819	n:570000
Cons ci ratio: 9.115536e-03	ci left: 2.438454e-01	ci right 2.460800e-01	k: 139628	n:570000
KS ci ratio: 1.845124e-01	ci left: 7.182320e-04	ci right 8.658655e-04	k: 450	n:570000
LRRC32   570000 perm   235 sec   (2425 perm/sec)   p_kst 7.894737e-04   p_cons 2.449614e-01   p_joint 1.436842e-03

Joint ci ratio: 1.361320e-01	ci left: 1.330389e-03	ci right 1.526370e-03	k: 827	n:580000
Cons ci ratio: 9.036723e-03	ci left: 2.438505e-01	ci right 2.460658e-01	k: 142075	n:580000
KS ci ratio: 1.832975e-01	ci left: 7.157172e-04	ci right 8.617574e-04	k: 456	n:580000
LRRC32   580000 perm   241 sec   (2405 perm/sec)   p_kst 7.862069e-04   p_cons 2.449569e-01   p_joint 1.425862e-03

Joint ci ratio: 1.399068e-01	ci left: 1.235834e-03	ci right 1.423355e-03	k: 783	n:590000
Cons ci ratio: 8.960248e-03	ci left: 2.438420e-01	ci right 2.460384e-01	k: 144514	n:590000
KS ci ratio: 1.823033e-01	ci left: 7.116730e-04	ci right 8.560135e-04	k: 461	n:590000
LRRC32   590000 perm   247 sec   (2384 perm/sec)   p_kst 7.813559e-04   p_cons 2.449390e-01   p_joint 1.327119e-03

Joint ci ratio: 1.411762e-01	ci left: 1.192722e-03	ci right 1.375482e-03	k: 769	n:600000
Cons ci ratio: 8.886082e-03	ci left: 2.438173e-01	ci right 2.459952e-01	k: 146943	n:600000
KS ci ratio: 1.809379e-01	ci left: 7.109480e-04	ci right 8.539432e-04	k: 468	n:600000
LRRC32   600000 perm   254 sec   (2363 perm/sec)   p_kst 7.800000e-04   p_cons 2.449050e-01   p_joint 1.281667e-03

Joint ci ratio: 1.403588e-01	ci left: 1.187403e-03	ci right 1.368206e-03	k: 778	n:610000
Cons ci ratio: 8.815721e-03	ci left: 2.437099e-01	ci right 2.458695e-01	k: 149321	n:610000
KS ci ratio: 1.797917e-01	ci left: 7.086851e-04	ci right 8.502239e-04	k: 474	n:610000
LRRC32   610000 perm   260 sec   (2342 perm/sec)   p_kst 7.770492e-04   p_cons 2.447885e-01   p_joint 1.275410e-03

Joint ci ratio: 1.390264e-01	ci left: 1.191600e-03	ci right 1.371177e-03	k: 793	n:620000
Cons ci ratio: 8.744945e-03	ci left: 2.436931e-01	ci right 2.458351e-01	k: 151753	n:620000
KS ci ratio: 1.788533e-01	ci left: 7.049571e-04	ci right 8.449369e-04	k: 479	n:620000
LRRC32   620000 perm   267 sec   (2322 perm/sec)   p_kst 7.725806e-04   p_cons 2.447629e-01   p_joint 1.279032e-03

Joint ci ratio: 1.383318e-01	ci left: 1.184943e-03	ci right 1.362551e-03	k: 801	n:630000
Cons ci ratio: 8.675436e-03	ci left: 2.436943e-01	ci right 2.458192e-01	k: 154196	n:630000
KS ci ratio: 1.781132e-01	ci left: 6.998327e-04	ci right 8.381580e-04	k: 483	n:630000
LRRC32   630000 perm   274 sec   (2303 perm/sec)   p_kst 7.666667e-04   p_cons 2.447556e-01   p_joint 1.271429e-03

Joint ci ratio: 1.379034e-01	ci left: 1.173970e-03	ci right 1.349344e-03	k: 806	n:640000
Cons ci ratio: 8.606467e-03	ci left: 2.437423e-01	ci right 2.458506e-01	k: 156669	n:640000
KS ci ratio: 1.759448e-01	ci left: 7.068172e-04	ci right 8.446414e-04	k: 495	n:640000
LRRC32   640000 perm   280 sec   (2285 perm/sec)   p_kst 7.734375e-04   p_cons 2.447953e-01   p_joint 1.259375e-03

Joint ci ratio: 1.383345e-01	ci left: 1.148482e-03	ci right 1.320628e-03	k: 801	n:650000
Cons ci ratio: 8.539864e-03	ci left: 2.437566e-01	ci right 2.458487e-01	k: 159121	n:650000
KS ci ratio: 1.747164e-01	ci left: 7.062397e-04	ci right 8.428883e-04	k: 502	n:650000
LRRC32   650000 perm   287 sec   (2267 perm/sec)   p_kst 7.723077e-04   p_cons 2.448015e-01   p_joint 1.232308e-03

Joint ci ratio: 1.379917e-01	ci left: 1.136931e-03	ci right 1.306889e-03	k: 805	n:660000
Cons ci ratio: 8.475860e-03	ci left: 2.437237e-01	ci right 2.457997e-01	k: 161542	n:660000
KS ci ratio: 1.736838e-01	ci left: 7.042336e-04	ci right 8.396043e-04	k: 508	n:660000
LRRC32   660000 perm   293 sec   (2249 perm/sec)   p_kst 7.696970e-04   p_cons 2.447606e-01   p_joint 1.219697e-03

Joint ci ratio: 1.364756e-01	ci left: 1.145906e-03	ci right 1.315171e-03	k: 823	n:670000
Cons ci ratio: 8.414055e-03	ci left: 2.436575e-01	ci right 2.457178e-01	k: 163940	n:670000
KS ci ratio: 1.720021e-01	ci left: 7.080025e-04	ci right 8.426431e-04	k: 518	n:670000
LRRC32   670000 perm   300 sec   (2232 perm/sec)   p_kst 7.731343e-04   p_cons 2.446866e-01   p_joint 1.228358e-03

Joint ci ratio: 1.474544e-01	ci left: 9.616720e-04	ci right 1.116159e-03	k: 705	n:680000
Cons ci ratio: 8.352851e-03	ci left: 2.436257e-01	ci right 2.456706e-01	k: 166360	n:680000
KS ci ratio: 1.779344e-01	ci left: 6.497779e-04	ci right 7.780667e-04	k: 484	n:680000
LRRC32   680000 perm   307 sec   (2215 perm/sec)   p_kst 7.117647e-04   p_cons 2.446471e-01   p_joint 1.036765e-03

Joint ci ratio: 1.482990e-01	ci left: 9.365686e-04	ci right 1.087961e-03	k: 697	n:690000
Cons ci ratio: 8.290460e-03	ci left: 2.437062e-01	ci right 2.457365e-01	k: 168857	n:690000
KS ci ratio: 1.772056e-01	ci left: 6.459002e-04	ci right 7.728451e-04	k: 488	n:690000
LRRC32   690000 perm   314 sec   (2198 perm/sec)   p_kst 7.072464e-04   p_cons 2.447203e-01   p_joint 1.010145e-03

Joint ci ratio: 1.479821e-01	ci left: 9.273156e-04	ci right 1.076863e-03	k: 700	n:700000
Cons ci ratio: 8.231768e-03	ci left: 2.436804e-01	ci right 2.456960e-01	k: 171281	n:700000
KS ci ratio: 1.757735e-01	ci left: 6.475968e-04	ci right 7.737373e-04	k: 496	n:700000
LRRC32   700000 perm   321 sec   (2181 perm/sec)   p_kst 7.085714e-04   p_cons 2.446871e-01   p_joint 1.000000e-03

Joint ci ratio: 1.487283e-01	ci left: 9.047609e-04	ci right 1.051472e-03	k: 693	n:710000
Cons ci ratio: 8.172530e-03	ci left: 2.437355e-01	ci right 2.457370e-01	k: 173762	n:710000
KS ci ratio: 1.748962e-01	ci left: 6.452089e-04	ci right 7.701907e-04	k: 501	n:710000
LRRC32   710000 perm   328 sec   (2165 perm/sec)   p_kst 7.056338e-04   p_cons 2.447352e-01   p_joint 9.760563e-04

Joint ci ratio: 1.497041e-01	ci left: 8.801606e-04	ci right 1.023903e-03	k: 684	n:720000
Cons ci ratio: 8.114492e-03	ci left: 2.437919e-01	ci right 2.457796e-01	k: 176245	n:720000
KS ci ratio: 1.736894e-01	ci left: 6.455457e-04	ci right 7.696395e-04	k: 508	n:720000
LRRC32   720000 perm   335 sec   (2149 perm/sec)   p_kst 7.055556e-04   p_cons 2.447847e-01   p_joint 9.500000e-04

Joint ci ratio: 1.480909e-01	ci left: 8.878863e-04	ci right 1.031190e-03	k: 699	n:730000
Cons ci ratio: 8.058269e-03	ci left: 2.438195e-01	ci right 2.457935e-01	k: 178708	n:730000
KS ci ratio: 1.720076e-01	ci left: 6.498088e-04	ci right 7.733870e-04	k: 518	n:730000
LRRC32   730000 perm   342 sec   (2132 perm/sec)   p_kst 7.095890e-04   p_cons 2.448055e-01   p_joint 9.575342e-04

Joint ci ratio: 1.478806e-01	ci left: 8.784901e-04	ci right 1.020058e-03	k: 701	n:740000
Cons ci ratio: 8.001387e-03	ci left: 2.439300e-01	ci right 2.458909e-01	k: 181233	n:740000
KS ci ratio: 1.700524e-01	ci left: 6.565499e-04	ci right 7.798453e-04	k: 530	n:740000
LRRC32   740000 perm   350 sec   (2117 perm/sec)   p_kst 7.162162e-04   p_cons 2.449095e-01   p_joint 9.472973e-04

Joint ci ratio: 1.178378e-01	ci left: 1.386498e-03	ci right 1.561389e-03	k: 1104	n:750000
Cons ci ratio: 7.947496e-03	ci left: 2.439537e-01	ci right 2.459016e-01	k: 183695	n:750000
KS ci ratio: 1.686291e-01	ci left: 6.592874e-04	ci right 7.819553e-04	k: 539	n:750000
LRRC32   750000 perm   357 sec   (2101 perm/sec)   p_kst 7.186667e-04   p_cons 2.449267e-01   p_joint 1.472000e-03

Joint ci ratio: 1.189216e-01	ci left: 1.342716e-03	ci right 1.513752e-03	k: 1084	n:760000
Cons ci ratio: 7.894342e-03	ci left: 2.439926e-01	ci right 2.459277e-01	k: 186169	n:760000
KS ci ratio: 1.667856e-01	ci left: 6.657395e-04	ci right 7.881178e-04	k: 551	n:760000
LRRC32   760000 perm   364 sec   (2086 perm/sec)   p_kst 7.250000e-04   p_cons 2.449592e-01   p_joint 1.426316e-03

Joint ci ratio: 1.239428e-01	ci left: 1.216976e-03	ci right 1.379021e-03	k: 998	n:770000
Cons ci ratio: 7.842461e-03	ci left: 2.440202e-01	ci right 2.459427e-01	k: 188635	n:770000
KS ci ratio: 1.652948e-01	ci left: 6.695410e-04	ci right 7.914086e-04	k: 561	n:770000
LRRC32   770000 perm   372 sec   (2070 perm/sec)   p_kst 7.285714e-04   p_cons 2.449805e-01   p_joint 1.296104e-03

Joint ci ratio: 1.235113e-01	ci left: 1.210070e-03	ci right 1.370593e-03	k: 1005	n:780000
Cons ci ratio: 7.792319e-03	ci left: 2.440126e-01	ci right 2.459227e-01	k: 191074	n:780000
KS ci ratio: 1.647100e-01	ci left: 6.658735e-04	ci right 7.866022e-04	k: 565	n:780000
LRRC32   780000 perm   380 sec   (2055 perm/sec)   p_kst 7.243590e-04   p_cons 2.449667e-01   p_joint 1.288462e-03

Joint ci ratio: 1.227209e-01	ci left: 1.210702e-03	ci right 1.370206e-03	k: 1018	n:790000
Cons ci ratio: 7.740928e-03	ci left: 2.441101e-01	ci right 2.460083e-01	k: 193596	n:790000
KS ci ratio: 1.638440e-01	ci left: 6.647274e-04	ci right 7.845522e-04	k: 571	n:790000
LRRC32   790000 perm   387 sec   (2039 perm/sec)   p_kst 7.227848e-04   p_cons 2.450582e-01   p_joint 1.288608e-03

Joint ci ratio: 1.216507e-01	ci left: 1.217380e-03	ci right 1.376266e-03	k: 1036	n:800000
Cons ci ratio: 7.691761e-03	ci left: 2.441465e-01	ci right 2.460329e-01	k: 196071	n:800000
KS ci ratio: 1.621514e-01	ci left: 6.708066e-04	ci right 7.903564e-04	k: 583	n:800000
LRRC32   800000 perm   395 sec   (2025 perm/sec)   p_kst 7.287500e-04   p_cons 2.450887e-01   p_joint 1.295000e-03

Joint ci ratio: 1.207802e-01	ci left: 1.220308e-03	ci right 1.378355e-03	k: 1051	n:810000
Cons ci ratio: 7.643825e-03	ci left: 2.441672e-01	ci right 2.460420e-01	k: 198534	n:810000
KS ci ratio: 1.607805e-01	ci left: 6.743720e-04	ci right 7.934429e-04	k: 593	n:810000
LRRC32   810000 perm   403 sec   (2010 perm/sec)   p_kst 7.320988e-04   p_cons 2.451037e-01   p_joint 1.297531e-03

Joint ci ratio: 1.201538e-01	ci left: 1.218437e-03	ci right 1.375364e-03	k: 1062	n:820000
Cons ci ratio: 7.598752e-03	ci left: 2.440913e-01	ci right 2.459544e-01	k: 200918	n:820000
KS ci ratio: 1.599747e-01	ci left: 6.731713e-04	ci right 7.913773e-04	k: 599	n:820000
LRRC32   820000 perm   411 sec   (1996 perm/sec)   p_kst 7.304878e-04   p_cons 2.450220e-01   p_joint 1.295122e-03

Joint ci ratio: 1.194814e-01	ci left: 1.217781e-03	ci right 1.373684e-03	k: 1074	n:830000
Cons ci ratio: 7.553286e-03	ci left: 2.440750e-01	ci right 2.459268e-01	k: 203350	n:830000
KS ci ratio: 1.591809e-01	ci left: 6.720010e-04	ci right 7.893600e-04	k: 605	n:830000
LRRC32   830000 perm   419 sec   (1982 perm/sec)   p_kst 7.289157e-04   p_cons 2.450000e-01   p_joint 1.293976e-03

Joint ci ratio: 1.200426e-01	ci left: 1.191735e-03	ci right 1.345071e-03	k: 1064	n:840000
Cons ci ratio: 7.509594e-03	ci left: 2.440116e-01	ci right 2.458521e-01	k: 205742	n:840000
KS ci ratio: 1.583988e-01	ci left: 6.708600e-04	ci right 7.873894e-04	k: 611	n:840000
LRRC32   840000 perm   427 sec   (1968 perm/sec)   p_kst 7.273810e-04   p_cons 2.449310e-01   p_joint 1.266667e-03

Joint ci ratio: 1.192059e-01	ci left: 1.194833e-03	ci right 1.347421e-03	k: 1079	n:850000
Cons ci ratio: 7.465344e-03	ci left: 2.440143e-01	ci right 2.458439e-01	k: 208189	n:850000
KS ci ratio: 1.573735e-01	ci left: 6.720075e-04	ci right 7.879092e-04	k: 619	n:850000
LRRC32   850000 perm   435 sec   (1954 perm/sec)   p_kst 7.282353e-04   p_cons 2.449282e-01   p_joint 1.269412e-03

Joint ci ratio: 1.234573e-01	ci left: 1.098628e-03	ci right 1.244300e-03	k: 1006	n:860000
Cons ci ratio: 7.423384e-03	ci left: 2.439415e-01	ci right 2.457602e-01	k: 210571	n:860000
KS ci ratio: 1.562434e-01	ci left: 6.742480e-04	ci right 7.896229e-04	k: 628	n:860000
LRRC32   860000 perm   443 sec   (1940 perm/sec)   p_kst 7.302326e-04   p_cons 2.448500e-01   p_joint 1.169767e-03

Joint ci ratio: 1.237661e-01	ci left: 1.080430e-03	ci right 1.224073e-03	k: 1001	n:870000
Cons ci ratio: 7.381413e-03	ci left: 2.439060e-01	ci right 2.457141e-01	k: 212984	n:870000
KS ci ratio: 1.553812e-01	ci left: 6.742303e-04	ci right 7.889062e-04	k: 635	n:870000
LRRC32   870000 perm   451 sec   (1928 perm/sec)   p_kst 7.298851e-04   p_cons 2.448092e-01   p_joint 1.150575e-03

Joint ci ratio: 1.239528e-01	ci left: 1.064849e-03	ci right 1.206650e-03	k: 998	n:880000
Cons ci ratio: 7.339626e-03	ci left: 2.438974e-01	ci right 2.456952e-01	k: 215420	n:880000
KS ci ratio: 1.540544e-01	ci left: 6.785847e-04	ci right 7.929247e-04	k: 646	n:880000
LRRC32   880000 perm   460 sec   (1915 perm/sec)   p_kst 7.340909e-04   p_cons 2.447955e-01   p_joint 1.134091e-03

Joint ci ratio: 1.235826e-01	ci left: 1.059417e-03	ci right 1.200042e-03	k: 1004	n:890000
Cons ci ratio: 7.296767e-03	ci left: 2.439788e-01	ci right 2.457667e-01	k: 217936	n:890000
KS ci ratio: 1.532277e-01	ci left: 6.785230e-04	ci right 7.921828e-04	k: 653	n:890000
LRRC32   890000 perm   468 sec   (1902 perm/sec)   p_kst 7.337079e-04   p_cons 2.448719e-01   p_joint 1.128090e-03

Joint ci ratio: 1.231548e-01	ci left: 1.055183e-03	ci right 1.194726e-03	k: 1011	n:900000
Cons ci ratio: 7.256045e-03	ci left: 2.439874e-01	ci right 2.457653e-01	k: 220388	n:900000
KS ci ratio: 1.526455e-01	ci left: 6.763267e-04	ci right 7.891488e-04	k: 658	n:900000
LRRC32   900000 perm   476 sec   (1890 perm/sec)   p_kst 7.311111e-04   p_cons 2.448756e-01   p_joint 1.123333e-03

Joint ci ratio: 1.226109e-01	ci left: 1.053174e-03	ci right 1.191791e-03	k: 1020	n:910000
Cons ci ratio: 7.216490e-03	ci left: 2.439706e-01	ci right 2.457387e-01	k: 222817	n:910000
KS ci ratio: 1.516136e-01	ci left: 6.784083e-04	ci right 7.907431e-04	k: 667	n:910000
LRRC32   910000 perm   485 sec   (1878 perm/sec)   p_kst 7.329670e-04   p_cons 2.448538e-01   p_joint 1.120879e-03

Joint ci ratio: 1.218966e-01	ci left: 1.054371e-03	ci right 1.192279e-03	k: 1032	n:920000
Cons ci ratio: 7.175466e-03	ci left: 2.440628e-01	ci right 2.458214e-01	k: 225346	n:920000
KS ci ratio: 1.504911e-01	ci left: 6.814931e-04	ci right 7.934281e-04	k: 677	n:920000
LRRC32   920000 perm   493 sec   (1865 perm/sec)   p_kst 7.358696e-04   p_cons 2.449413e-01   p_joint 1.121739e-03

Joint ci ratio: 1.257330e-01	ci left: 9.784288e-04	ci right 1.110732e-03	k: 970	n:930000
Cons ci ratio: 7.136358e-03	ci left: 2.440896e-01	ci right 2.458388e-01	k: 227816	n:930000
KS ci ratio: 1.498297e-01	ci left: 6.803744e-04	ci right 7.915905e-04	k: 683	n:930000
LRRC32   930000 perm   502 sec   (1853 perm/sec)   p_kst 7.344086e-04   p_cons 2.449634e-01   p_joint 1.043011e-03

Joint ci ratio: 1.251544e-01	ci left: 9.772940e-04	ci right 1.108790e-03	k: 979	n:940000
Cons ci ratio: 7.099065e-03	ci left: 2.440543e-01	ci right 2.457941e-01	k: 230228	n:940000
KS ci ratio: 1.490689e-01	ci left: 6.803047e-04	ci right 7.908944e-04	k: 690	n:940000
LRRC32   940000 perm   510 sec   (1841 perm/sec)   p_kst 7.340426e-04   p_cons 2.449234e-01   p_joint 1.041489e-03

Joint ci ratio: 1.242697e-01	ci left: 9.812839e-04	ci right 1.112315e-03	k: 993	n:950000
Cons ci ratio: 7.060503e-03	ci left: 2.441165e-01	ci right 2.458472e-01	k: 232732	n:950000
KS ci ratio: 1.480016e-01	ci left: 6.832788e-04	ci right 7.934863e-04	k: 700	n:950000
LRRC32   950000 perm   519 sec   (1830 perm/sec)   p_kst 7.368421e-04   p_cons 2.449811e-01   p_joint 1.045263e-03

Joint ci ratio: 1.251558e-01	ci left: 9.569330e-04	ci right 1.085691e-03	k: 979	n:960000
Cons ci ratio: 7.024698e-03	ci left: 2.440650e-01	ci right 2.457865e-01	k: 235128	n:960000
KS ci ratio: 1.470605e-01	ci left: 6.851903e-04	ci right 7.949416e-04	k: 709	n:960000
LRRC32   960000 perm   528 sec   (1818 perm/sec)   p_kst 7.385417e-04   p_cons 2.449250e-01   p_joint 1.019792e-03

Joint ci ratio: 1.251565e-01	ci left: 9.470675e-04	ci right 1.074499e-03	k: 979	n:970000
Cons ci ratio: 6.989256e-03	ci left: 2.440239e-01	ci right 2.457364e-01	k: 237533	n:970000
KS ci ratio: 1.466482e-01	ci left: 6.820986e-04	ci right 7.910215e-04	k: 713	n:970000
LRRC32   970000 perm   537 sec   (1807 perm/sec)   p_kst 7.350515e-04   p_cons 2.448794e-01   p_joint 1.009278e-03

Joint ci ratio: 1.242717e-01	ci left: 9.512437e-04	ci right 1.078266e-03	k: 993	n:980000
Cons ci ratio: 6.956477e-03	ci left: 2.438705e-01	ci right 2.455739e-01	k: 239827	n:980000
KS ci ratio: 1.457325e-01	ci left: 6.839862e-04	ci right 7.924692e-04	k: 722	n:980000
LRRC32   980000 perm   546 sec   (1796 perm/sec)   p_kst 7.367347e-04   p_cons 2.447214e-01   p_joint 1.013265e-03

Joint ci ratio: 1.235897e-01	ci left: 9.524018e-04	ci right 1.078830e-03	k: 1004	n:990000
Cons ci ratio: 6.921296e-03	ci left: 2.438726e-01	ci right 2.455673e-01	k: 242272	n:990000
KS ci ratio: 1.446361e-01	ci left: 6.877848e-04	ci right 7.959788e-04	k: 733	n:990000
LRRC32   990000 perm   555 sec   (1784 perm/sec)   p_kst 7.404040e-04   p_cons 2.447192e-01   p_joint 1.014141e-03

Joint ci ratio: 1.227375e-01	ci left: 9.564466e-04	ci right 1.082472e-03	k: 1018	n:1000000
Cons ci ratio: 6.885265e-03	ci left: 2.439485e-01	ci right 2.456350e-01	k: 244791	n:1000000
KS ci ratio: 1.439514e-01	ci left: 6.876543e-04	ci right 7.952716e-04	k: 740	n:1000000
LRRC32   1000000 perm   564 sec   (1773 perm/sec)   p_kst 7.400000e-04   p_cons 2.447910e-01   p_joint 1.018000e-03

Joint ci ratio: 1.248406e-01	ci left: 9.143546e-04	ci right 1.037051e-03	k: 984	n:1010000
Cons ci ratio: 6.851534e-03	ci left: 2.439291e-01	ci right 2.456071e-01	k: 247215	n:1010000
KS ci ratio: 1.432762e-01	ci left: 6.875275e-04	ci right 7.945771e-04	k: 747	n:1010000
LRRC32   1010000 perm   573 sec   (1762 perm/sec)   p_kst 7.396040e-04   p_cons 2.447673e-01   p_joint 9.742574e-04

Joint ci ratio: 1.267224e-01	ci left: 8.778524e-04	ci right 9.975597e-04	k: 955	n:1020000
Cons ci ratio: 6.817877e-03	ci left: 2.439325e-01	ci right 2.456023e-01	k: 249662	n:1020000
KS ci ratio: 1.423278e-01	ci left: 6.902407e-04	ci right 7.969411e-04	k: 757	n:1020000
LRRC32   1020000 perm   582 sec   (1752 perm/sec)   p_kst 7.421569e-04   p_cons 2.447667e-01   p_joint 9.362745e-04

Joint ci ratio: 1.280025e-01	ci left: 8.514699e-04	ci right 9.688416e-04	k: 936	n:1030000
Cons ci ratio: 6.784873e-03	ci left: 2.439272e-01	ci right 2.455888e-01	k: 252100	n:1030000
KS ci ratio: 1.413060e-01	ci left: 6.938401e-04	ci right 8.002619e-04	k: 768	n:1030000
LRRC32   1030000 perm   592 sec   (1741 perm/sec)   p_kst 7.456311e-04   p_cons 2.447573e-01   p_joint 9.087379e-04

Joint ci ratio: 1.281400e-01	ci left: 8.414210e-04	ci right 9.575415e-04	k: 934	n:1040000
Cons ci ratio: 6.751184e-03	ci left: 2.439854e-01	ci right 2.456391e-01	k: 254604	n:1040000
KS ci ratio: 1.411229e-01	ci left: 6.890236e-04	ci right 7.945582e-04	k: 770	n:1040000
LRRC32   1040000 perm   601 sec   (1730 perm/sec)   p_kst 7.403846e-04   p_cons 2.448115e-01   p_joint 8.980769e-04

Joint ci ratio: 1.275954e-01	ci left: 8.407828e-04	ci right 9.562847e-04	k: 942	n:1050000
Cons ci ratio: 6.718389e-03	ci left: 2.440206e-01	ci right 2.456665e-01	k: 257085	n:1050000
KS ci ratio: 1.403964e-01	ci left: 6.898122e-04	ci right 7.948782e-04	k: 778	n:1050000
LRRC32   1050000 perm   611 sec   (1719 perm/sec)   p_kst 7.409524e-04   p_cons 2.448429e-01   p_joint 8.971429e-04

Joint ci ratio: 1.267246e-01	ci left: 8.447250e-04	ci right 9.599171e-04	k: 955	n:1060000
Cons ci ratio: 6.688150e-03	ci left: 2.439402e-01	ci right 2.455781e-01	k: 259444	n:1060000
KS ci ratio: 1.393271e-01	ci left: 6.942293e-04	ci right 7.990958e-04	k: 790	n:1060000
LRRC32   1060000 perm   620 sec   (1709 perm/sec)   p_kst 7.452830e-04   p_cons 2.447585e-01   p_joint 9.009434e-04

Joint ci ratio: 1.259365e-01	ci left: 8.476910e-04	ci right 9.625150e-04	k: 967	n:1070000
Cons ci ratio: 6.655874e-03	ci left: 2.439967e-01	ci right 2.456271e-01	k: 261948	n:1070000
KS ci ratio: 1.383681e-01	ci left: 6.976645e-04	ci right 8.022648e-04	k: 801	n:1070000
LRRC32   1070000 perm   630 sec   (1699 perm/sec)   p_kst 7.485981e-04   p_cons 2.448112e-01   p_joint 9.037383e-04

Joint ci ratio: 1.254194e-01	ci left: 8.470165e-04	ci right 9.612430e-04	k: 975	n:1080000
Cons ci ratio: 6.623697e-03	ci left: 2.440726e-01	ci right 2.456955e-01	k: 264474	n:1080000
KS ci ratio: 1.377682e-01	ci left: 6.974622e-04	ci right 8.015417e-04	k: 808	n:1080000
LRRC32   1080000 perm   640 sec   (1689 perm/sec)   p_kst 7.481481e-04   p_cons 2.448833e-01   p_joint 9.027778e-04

Joint ci ratio: 1.043266e-01	ci left: 1.226078e-03	ci right 1.361915e-03	k: 1409	n:1090000
Cons ci ratio: 6.594287e-03	ci left: 2.440178e-01	ci right 2.456331e-01	k: 266859	n:1090000
KS ci ratio: 1.290437e-01	ci left: 7.912794e-04	ci right 9.013091e-04	k: 921	n:1090000
LRRC32   1090000 perm   649 sec   (1679 perm/sec)   p_kst 8.449541e-04   p_cons 2.448248e-01   p_joint 1.292661e-03

Joint ci ratio: 1.042533e-01	ci left: 1.216702e-03	ci right 1.351400e-03	k: 1411	n:1100000
Cons ci ratio: 6.563636e-03	ci left: 2.440557e-01	ci right 2.456638e-01	k: 269345	n:1100000
KS ci ratio: 1.285566e-01	ci left: 7.902445e-04	ci right 8.996840e-04	k: 928	n:1100000
LRRC32   1100000 perm   659 sec   (1669 perm/sec)   p_kst 8.436364e-04   p_cons 2.448591e-01   p_joint 1.282727e-03

Joint ci ratio: 1.038862e-01	ci left: 1.214516e-03	ci right 1.348469e-03	k: 1421	n:1110000
Cons ci ratio: 6.534777e-03	ci left: 2.440156e-01	ci right 2.456163e-01	k: 271745	n:1110000
KS ci ratio: 1.282123e-01	ci left: 7.874850e-04	ci right 8.962279e-04	k: 933	n:1110000
LRRC32   1110000 perm   669 sec   (1659 perm/sec)   p_kst 8.405405e-04   p_cons 2.448153e-01   p_joint 1.280180e-03

Joint ci ratio: 1.034868e-01	ci left: 1.213238e-03	ci right 1.346505e-03	k: 1432	n:1120000
Cons ci ratio: 6.505619e-03	ci left: 2.440146e-01	ci right 2.456081e-01	k: 274188	n:1120000
KS ci ratio: 1.276667e-01	ci left: 7.873681e-04	ci right 8.955972e-04	k: 941	n:1120000
LRRC32   1120000 perm   679 sec   (1650 perm/sec)   p_kst 8.401786e-04   p_cons 2.448107e-01   p_joint 1.278571e-03

Joint ci ratio: 1.030919e-01	ci left: 1.211985e-03	ci right 1.344575e-03	k: 1443	n:1130000
Cons ci ratio: 6.475717e-03	ci left: 2.440782e-01	ci right 2.456647e-01	k: 276704	n:1130000
KS ci ratio: 1.270612e-01	ci left: 7.881111e-04	ci right 8.958898e-04	k: 950	n:1130000
LRRC32   1130000 perm   689 sec   (1641 perm/sec)   p_kst 8.407080e-04   p_cons 2.448708e-01   p_joint 1.276991e-03

Joint ci ratio: 1.032358e-01	ci left: 1.197935e-03	ci right 1.329182e-03	k: 1439	n:1140000
Cons ci ratio: 6.447141e-03	ci left: 2.440880e-01	ci right 2.456676e-01	k: 279160	n:1140000
KS ci ratio: 1.263325e-01	ci left: 7.905412e-04	ci right 8.979858e-04	k: 961	n:1140000
LRRC32   1140000 perm   699 sec   (1631 perm/sec)   p_kst 8.429825e-04   p_cons 2.448772e-01   p_joint 1.262281e-03

Joint ci ratio: 1.029504e-01	ci left: 1.194295e-03	ci right 1.324760e-03	k: 1447	n:1150000
Cons ci ratio: 6.418517e-03	ci left: 2.441221e-01	ci right 2.456949e-01	k: 281644	n:1150000
KS ci ratio: 1.254228e-01	ci left: 7.954577e-04	ci right 9.027342e-04	k: 975	n:1150000
LRRC32   1150000 perm   709 sec   (1622 perm/sec)   p_kst 8.478261e-04   p_cons 2.449078e-01   p_joint 1.258261e-03

Joint ci ratio: 1.028798e-01	ci left: 1.185679e-03	ci right 1.315108e-03	k: 1449	n:1160000
Cons ci ratio: 6.391836e-03	ci left: 2.440651e-01	ci right 2.456310e-01	k: 284023	n:1160000
KS ci ratio: 1.247218e-01	ci left: 7.977864e-04	ci right 9.047312e-04	k: 986	n:1160000
LRRC32   1160000 perm   719 sec   (1613 perm/sec)   p_kst 8.500000e-04   p_cons 2.448474e-01   p_joint 1.249138e-03

Joint ci ratio: 1.035620e-01	ci left: 1.159724e-03	ci right 1.287210e-03	k: 1430	n:1170000
Cons ci ratio: 6.364366e-03	ci left: 2.440740e-01	ci right 2.456332e-01	k: 286478	n:1170000
KS ci ratio: 1.241570e-01	ci left: 7.984206e-04	ci right 9.049301e-04	k: 995	n:1170000
LRRC32   1170000 perm   730 sec   (1604 perm/sec)   p_kst 8.504274e-04   p_cons 2.448530e-01   p_joint 1.222222e-03

Joint ci ratio: 1.033098e-01	ci left: 1.155674e-03	ci right 1.282388e-03	k: 1437	n:1180000
Cons ci ratio: 6.337770e-03	ci left: 2.440524e-01	ci right 2.456048e-01	k: 288897	n:1180000
KS ci ratio: 1.236614e-01	ci left: 7.982238e-04	ci right 9.042509e-04	k: 1003	n:1180000
LRRC32   1180000 perm   740 sec   (1594 perm/sec)   p_kst 8.500000e-04   p_cons 2.448280e-01   p_joint 1.217797e-03

Joint ci ratio: 1.029170e-01	ci left: 1.154968e-03	ci right 1.281093e-03	k: 1448	n:1190000
Cons ci ratio: 6.310887e-03	ci left: 2.440671e-01	ci right 2.456131e-01	k: 291359	n:1190000
KS ci ratio: 1.232937e-01	ci left: 7.964023e-04	ci right 9.018499e-04	k: 1009	n:1190000
LRRC32   1190000 perm   751 sec   (1586 perm/sec)   p_kst 8.478992e-04   p_cons 2.448395e-01   p_joint 1.216807e-03

Joint ci ratio: 1.025286e-01	ci left: 1.154274e-03	ci right 1.279820e-03	k: 1459	n:1200000
Cons ci ratio: 6.285067e-03	ci left: 2.440392e-01	ci right 2.455787e-01	k: 293770	n:1200000
KS ci ratio: 1.228687e-01	ci left: 7.954193e-04	ci right 9.003473e-04	k: 1016	n:1200000
LRRC32   1200000 perm   761 sec   (1577 perm/sec)   p_kst 8.466667e-04   p_cons 2.448083e-01   p_joint 1.215833e-03

Joint ci ratio: 1.029180e-01	ci left: 1.135877e-03	ci right 1.259919e-03	k: 1448	n:1210000
Cons ci ratio: 6.259169e-03	ci left: 2.440349e-01	ci right 2.455680e-01	k: 296209	n:1210000
KS ci ratio: 1.224481e-01	ci left: 7.944532e-04	ci right 8.988690e-04	k: 1023	n:1210000
LRRC32   1210000 perm   772 sec   (1568 perm/sec)   p_kst 8.454545e-04   p_cons 2.448008e-01   p_joint 1.196694e-03

Joint ci ratio: 9.475682e-02	ci left: 1.334428e-03	ci right 1.467957e-03	k: 1708	n:1220000
Cons ci ratio: 5.883581e-03	ci left: 2.659989e-01	ci right 2.675694e-01	k: 325476	n:1220000
KS ci ratio: 1.217367e-01	ci left: 7.974770e-04	ci right 9.016375e-04	k: 1035	n:1220000
LRRC32   1220000 perm   782 sec   (1560 perm/sec)   p_kst 8.483607e-04   p_cons 2.667836e-01   p_joint 1.400000e-03

Joint ci ratio: 9.431626e-02	ci left: 1.336280e-03	ci right 1.469338e-03	k: 1724	n:1230000
Cons ci ratio: 5.861343e-03	ci left: 2.658869e-01	ci right 2.674508e-01	k: 328002	n:1230000
KS ci ratio: 1.208645e-01	ci left: 8.028187e-04	ci right 9.068719e-04	k: 1050	n:1230000
LRRC32   1230000 perm   793 sec   (1551 perm/sec)   p_kst 8.536585e-04   p_cons 2.666683e-01   p_joint 1.401626e-03

Joint ci ratio: 9.380091e-02	ci left: 1.340466e-03	ci right 1.473171e-03	k: 1743	n:1240000
Cons ci ratio: 5.837921e-03	ci left: 2.658726e-01	ci right 2.674301e-01	k: 330647	n:1240000
KS ci ratio: 1.201802e-01	ci left: 8.057301e-04	ci right 9.095273e-04	k: 1062	n:1240000
LRRC32   1240000 perm   804 sec   (1543 perm/sec)   p_kst 8.564516e-04   p_cons 2.666508e-01   p_joint 1.405645e-03

Joint ci ratio: 9.342667e-02	ci left: 1.340680e-03	ci right 1.472848e-03	k: 1757	n:1250000
Cons ci ratio: 5.814993e-03	ci left: 2.658442e-01	ci right 2.673953e-01	k: 333274	n:1250000
KS ci ratio: 1.198426e-01	ci left: 8.039401e-04	ci right 9.071952e-04	k: 1068	n:1250000
LRRC32   1250000 perm   814 sec   (1535 perm/sec)   p_kst 8.544000e-04   p_cons 2.666192e-01   p_joint 1.405600e-03

Joint ci ratio: 9.303059e-02	ci left: 1.341667e-03	ci right 1.473340e-03	k: 1772	n:1260000
Cons ci ratio: 5.791592e-03	ci left: 2.658661e-01	ci right 2.674111e-01	k: 335964	n:1260000
KS ci ratio: 1.192306e-01	ci left: 8.060288e-04	ci right 9.089863e-04	k: 1079	n:1260000
LRRC32   1260000 perm   825 sec   (1527 perm/sec)   p_kst 8.563492e-04   p_cons 2.666381e-01   p_joint 1.406349e-03

Joint ci ratio: 9.253591e-02	ci left: 1.345716e-03	ci right 1.477047e-03	k: 1791	n:1270000
Cons ci ratio: 5.769052e-03	ci left: 2.658484e-01	ci right 2.673873e-01	k: 338604	n:1270000
KS ci ratio: 1.187915e-01	ci left: 8.057938e-04	ci right 9.083155e-04	k: 1087	n:1270000
LRRC32   1270000 perm   836 sec   (1519 perm/sec)   p_kst 8.559055e-04   p_cons 2.666173e-01   p_joint 1.410236e-03

Joint ci ratio: 9.220211e-02	ci left: 1.345124e-03	ci right 1.475898e-03	k: 1804	n:1280000
Cons ci ratio: 5.746784e-03	ci left: 2.658302e-01	ci right 2.673630e-01	k: 341243	n:1280000
KS ci ratio: 1.183032e-01	ci left: 8.063213e-04	ci right 9.084590e-04	k: 1096	n:1280000
LRRC32   1280000 perm   847 sec   (1511 perm/sec)   p_kst 8.562500e-04   p_cons 2.665961e-01   p_joint 1.409375e-03

Joint ci ratio: 9.199868e-02	ci left: 1.340756e-03	ci right 1.470802e-03	k: 1812	n:1290000
Cons ci ratio: 5.725522e-03	ci left: 2.657612e-01	ci right 2.672879e-01	k: 343816	n:1290000
KS ci ratio: 1.177144e-01	ci left: 8.083463e-04	ci right 9.101953e-04	k: 1107	n:1290000
LRRC32   1290000 perm   859 sec   (1502 perm/sec)   p_kst 8.581395e-04   p_cons 2.665240e-01   p_joint 1.404651e-03

Joint ci ratio: 9.316424e-02	ci left: 1.296627e-03	ci right 1.424073e-03	k: 1767	n:1300000
Cons ci ratio: 5.703191e-03	ci left: 2.657824e-01	ci right 2.673033e-01	k: 346505	n:1300000
KS ci ratio: 1.173970e-01	ci left: 8.066078e-04	ci right 9.079449e-04	k: 1113	n:1300000
LRRC32   1300000 perm   870 sec   (1494 perm/sec)   p_kst 8.561538e-04   p_cons 2.665423e-01   p_joint 1.359231e-03

Joint ci ratio: 9.284973e-02	ci left: 1.295676e-03	ci right 1.422575e-03	k: 1779	n:1310000
Cons ci ratio: 5.681742e-03	ci left: 2.657606e-01	ci right 2.672756e-01	k: 349138	n:1310000
KS ci ratio: 1.170300e-01	ci left: 8.056374e-04	ci right 9.065142e-04	k: 1120	n:1310000
LRRC32   1310000 perm   881 sec   (1487 perm/sec)   p_kst 8.549618e-04   p_cons 2.665176e-01   p_joint 1.358015e-03

Joint ci ratio: 9.269390e-02	ci left: 1.290300e-03	ci right 1.416449e-03	k: 1785	n:1320000
Cons ci ratio: 5.659282e-03	ci left: 2.658254e-01	ci right 2.673347e-01	k: 351885	n:1320000
KS ci ratio: 1.167700e-01	ci left: 8.032111e-04	ci right 9.035453e-04	k: 1125	n:1320000
LRRC32   1320000 perm   893 sec   (1479 perm/sec)   p_kst 8.522727e-04   p_cons 2.665795e-01   p_joint 1.352273e-03

Joint ci ratio: 9.230704e-02	ci left: 1.291616e-03	ci right 1.417338e-03	k: 1800	n:1330000
Cons ci ratio: 5.638062e-03	ci left: 2.658216e-01	ci right 2.673253e-01	k: 354542	n:1330000
KS ci ratio: 1.162549e-01	ci left: 8.044716e-04	ci right 9.044895e-04	k: 1135	n:1330000
LRRC32   1330000 perm   904 sec   (1471 perm/sec)   p_kst 8.533835e-04   p_cons 2.665729e-01   p_joint 1.353383e-03

Joint ci ratio: 9.233317e-02	ci left: 1.281248e-03	ci right 1.405998e-03	k: 1799	n:1340000
Cons ci ratio: 5.616339e-03	ci left: 2.658693e-01	ci right 2.673675e-01	k: 357268	n:1340000
KS ci ratio: 1.158984e-01	ci left: 8.035403e-04	ci right 9.031151e-04	k: 1142	n:1340000
LRRC32   1340000 perm   915 sec   (1464 perm/sec)   p_kst 8.522388e-04   p_cons 2.666179e-01   p_joint 1.342537e-03

Joint ci ratio: 9.279941e-02	ci left: 1.258732e-03	ci right 1.381942e-03	k: 1781	n:1350000
Cons ci ratio: 5.595257e-03	ci left: 2.658890e-01	ci right 2.673816e-01	k: 359957	n:1350000
KS ci ratio: 1.154950e-01	ci left: 8.033426e-04	ci right 9.025227e-04	k: 1150	n:1350000
LRRC32   1350000 perm   927 sec   (1456 perm/sec)   p_kst 8.518519e-04   p_cons 2.666348e-01   p_joint 1.319259e-03

Joint ci ratio: 9.238550e-02	ci left: 1.260969e-03	ci right 1.383818e-03	k: 1797	n:1360000
Cons ci ratio: 5.574715e-03	ci left: 2.658871e-01	ci right 2.673742e-01	k: 362617	n:1360000
KS ci ratio: 1.149469e-01	ci left: 8.052908e-04	ci right 9.042077e-04	k: 1161	n:1360000
LRRC32   1360000 perm   938 sec   (1449 perm/sec)   p_kst 8.536765e-04   p_cons 2.666301e-01   p_joint 1.321324e-03

Joint ci ratio: 9.207878e-02	ci left: 1.260322e-03	ci right 1.382678e-03	k: 1809	n:1370000
Cons ci ratio: 5.554553e-03	ci left: 2.658743e-01	ci right 2.673559e-01	k: 365262	n:1370000
KS ci ratio: 1.145043e-01	ci left: 8.057936e-04	ci right 9.043654e-04	k: 1170	n:1370000
LRRC32   1370000 perm   950 sec   (1442 perm/sec)   p_kst 8.540146e-04   p_cons 2.666146e-01   p_joint 1.320438e-03

Joint ci ratio: 9.177509e-02	ci left: 1.259685e-03	ci right 1.381554e-03	k: 1821	n:1380000
Cons ci ratio: 5.535090e-03	ci left: 2.658276e-01	ci right 2.673038e-01	k: 367860	n:1380000
KS ci ratio: 1.142608e-01	ci left: 8.034740e-04	ci right 9.015389e-04	k: 1175	n:1380000
LRRC32   1380000 perm   962 sec   (1435 perm/sec)   p_kst 8.514493e-04   p_cons 2.665652e-01   p_joint 1.319565e-03

Joint ci ratio: 9.202876e-02	ci left: 1.243593e-03	ci right 1.364256e-03	k: 1811	n:1390000
Cons ci ratio: 5.515262e-03	ci left: 2.658219e-01	ci right 2.672927e-01	k: 370514	n:1390000
KS ci ratio: 1.139705e-01	ci left: 8.018869e-04	ci right 8.994927e-04	k: 1181	n:1390000
LRRC32   1390000 perm   974 sec   (1428 perm/sec)   p_kst 8.496403e-04   p_cons 2.665568e-01   p_joint 1.302878e-03

Joint ci ratio: 8.789983e-02	ci left: 1.356204e-03	ci right 1.481587e-03	k: 1985	n:1400000
Cons ci ratio: 5.693222e-03	ci left: 2.522479e-01	ci right 2.536888e-01	k: 354155	n:1400000
KS ci ratio: 1.134437e-01	ci left: 8.037929e-04	ci right 9.011483e-04	k: 1192	n:1400000
LRRC32   1400000 perm   986 sec   (1420 perm/sec)   p_kst 8.514286e-04   p_cons 2.529679e-01   p_joint 1.417857e-03

Joint ci ratio: 8.754782e-02	ci left: 1.357684e-03	ci right 1.482676e-03	k: 2001	n:1410000
Cons ci ratio: 5.673495e-03	ci left: 2.522174e-01	ci right 2.536531e-01	k: 356638	n:1410000
KS ci ratio: 1.130653e-01	ci left: 8.036053e-04	ci right 9.005916e-04	k: 1200	n:1410000
LRRC32   1410000 perm   998 sec   (1413 perm/sec)   p_kst 8.510638e-04   p_cons 2.529348e-01   p_joint 1.419149e-03

Joint ci ratio: 8.855050e-02	ci left: 1.317130e-03	ci right 1.439848e-03	k: 1956	n:1420000
Cons ci ratio: 5.653412e-03	ci left: 2.522246e-01	ci right 2.536553e-01	k: 359174	n:1420000
KS ci ratio: 1.126906e-01	ci left: 8.034208e-04	ci right 9.000422e-04	k: 1208	n:1420000
LRRC32   1420000 perm   1010 sec   (1407 perm/sec)   p_kst 8.507042e-04   p_cons 2.529394e-01   p_joint 1.377465e-03

Joint ci ratio: 8.937794e-02	ci left: 1.283303e-03	ci right 1.404046e-03	k: 1920	n:1430000
Cons ci ratio: 5.634209e-03	ci left: 2.521870e-01	ci right 2.536126e-01	k: 361646	n:1430000
KS ci ratio: 1.124585e-01	ci left: 8.012005e-04	ci right 8.973431e-04	k: 1213	n:1430000
LRRC32   1430000 perm   1022 sec   (1400 perm/sec)   p_kst 8.482517e-04   p_cons 2.528993e-01   p_joint 1.342657e-03

Joint ci ratio: 8.912321e-02	ci left: 1.281860e-03	ci right 1.402105e-03	k: 1931	n:1440000
Cons ci ratio: 5.614426e-03	ci left: 2.522020e-01	ci right 2.536226e-01	k: 364193	n:1440000
KS ci ratio: 1.119066e-01	ci left: 8.037362e-04	ci right 8.996786e-04	k: 1225	n:1440000
LRRC32   1440000 perm   1034 sec   (1393 perm/sec)   p_kst 8.506944e-04   p_cons 2.529118e-01   p_joint 1.340972e-03

Joint ci ratio: 8.887065e-02	ci left: 1.280437e-03	ci right 1.400190e-03	k: 1942	n:1450000
Cons ci ratio: 5.594635e-03	ci left: 2.522312e-01	ci right 2.536470e-01	k: 366761	n:1450000
KS ci ratio: 1.116339e-01	ci left: 8.022154e-04	ci right 8.977275e-04	k: 1231	n:1450000
LRRC32   1450000 perm   1046 sec   (1386 perm/sec)   p_kst 8.489655e-04   p_cons 2.529386e-01   p_joint 1.339310e-03

Joint ci ratio: 8.030352e-02	ci left: 1.564005e-03	ci right 1.695519e-03	k: 2378	n:1460000
Cons ci ratio: 5.575780e-03	ci left: 2.522108e-01	ci right 2.536217e-01	k: 369257	n:1460000
KS ci ratio: 1.143608e-01	ci left: 7.581163e-04	ci right 8.507317e-04	k: 1173	n:1460000
LRRC32   1460000 perm   1058 sec   (1380 perm/sec)   p_kst 8.034247e-04   p_cons 2.529158e-01   p_joint 1.628767e-03

Joint ci ratio: 7.998468e-02	ci left: 1.566031e-03	ci right 1.697169e-03	k: 2397	n:1470000
Cons ci ratio: 5.556734e-03	ci left: 2.522165e-01	ci right 2.536226e-01	k: 371791	n:1470000
KS ci ratio: 1.139731e-01	ci left: 7.582459e-04	ci right 8.505419e-04	k: 1181	n:1470000
LRRC32   1470000 perm   1071 sec   (1373 perm/sec)   p_kst 8.034014e-04   p_cons 2.529190e-01   p_joint 1.630612e-03

Joint ci ratio: 7.958720e-02	ci left: 1.571343e-03	ci right 1.702241e-03	k: 2421	n:1480000
Cons ci ratio: 5.538397e-03	ci left: 2.521870e-01	ci right 2.535883e-01	k: 374273	n:1480000
KS ci ratio: 1.134464e-01	ci left: 7.603437e-04	ci right 8.524387e-04	k: 1192	n:1480000
LRRC32   1480000 perm   1083 sec   (1366 perm/sec)   p_kst 8.054054e-04   p_cons 2.528872e-01   p_joint 1.635811e-03

Joint ci ratio: 7.932562e-02	ci left: 1.571322e-03	ci right 1.701768e-03	k: 2437	n:1490000
Cons ci ratio: 5.520093e-03	ci left: 2.521680e-01	ci right 2.535645e-01	k: 376770	n:1490000
KS ci ratio: 1.133516e-01	ci left: 7.565448e-04	ci right 8.480981e-04	k: 1194	n:1490000
LRRC32   1490000 perm   1096 sec   (1360 perm/sec)   p_kst 8.013423e-04   p_cons 2.528658e-01   p_joint 1.635570e-03

Joint ci ratio: 7.911506e-02	ci left: 1.569341e-03	ci right 1.699262e-03	k: 2450	n:1500000
Cons ci ratio: 5.501513e-03	ci left: 2.521806e-01	ci right 2.535724e-01	k: 379314	n:1500000
KS ci ratio: 1.132098e-01	ci left: 7.534444e-04	ci right 8.445008e-04	k: 1197	n:1500000
LRRC32   1500000 perm   1108 sec   (1354 perm/sec)   p_kst 7.980000e-04   p_cons 2.528760e-01   p_joint 1.633333e-03

Joint ci ratio: 8.044127e-02	ci left: 1.507023e-03	ci right 1.633974e-03	k: 2370	n:1510000
Cons ci ratio: 5.483716e-03	ci left: 2.521519e-01	ci right 2.535391e-01	k: 381796	n:1510000
KS ci ratio: 1.129274e-01	ci left: 7.523159e-04	ci right 8.429939e-04	k: 1203	n:1510000
LRRC32   1510000 perm   1121 sec   (1347 perm/sec)   p_kst 7.966887e-04   p_cons 2.528450e-01   p_joint 1.569536e-03

Joint ci ratio: 8.008724e-02	ci left: 1.510647e-03	ci right 1.637317e-03	k: 2391	n:1520000
Cons ci ratio: 5.465556e-03	ci left: 2.521605e-01	ci right 2.535431e-01	k: 384334	n:1520000
KS ci ratio: 1.125077e-01	ci left: 7.531205e-04	ci right 8.435358e-04	k: 1212	n:1520000
LRRC32   1520000 perm   1133 sec   (1341 perm/sec)   p_kst 7.973684e-04   p_cons 2.528513e-01   p_joint 1.573026e-03

Joint ci ratio: 8.032343e-02	ci left: 1.491806e-03	ci right 1.617282e-03	k: 2377	n:1530000
Cons ci ratio: 5.446945e-03	ci left: 2.522127e-01	ci right 2.535909e-01	k: 386939	n:1530000
KS ci ratio: 1.120009e-01	ci left: 7.551859e-04	ci right 8.454138e-04	k: 1223	n:1530000
LRRC32   1530000 perm   1146 sec   (1335 perm/sec)   p_kst 7.993464e-04   p_cons 2.529013e-01   p_joint 1.553595e-03

Joint ci ratio: 8.008806e-02	ci left: 1.491028e-03	ci right 1.616054e-03	k: 2391	n:1540000
Cons ci ratio: 5.429689e-03	ci left: 2.521831e-01	ci right 2.535568e-01	k: 389419	n:1540000
KS ci ratio: 1.115461e-01	ci left: 7.565941e-04	ci right 8.465990e-04	k: 1233	n:1540000
LRRC32   1540000 perm   1159 sec   (1329 perm/sec)   p_kst 8.006494e-04   p_cons 2.528695e-01   p_joint 1.552597e-03

Joint ci ratio: 8.148205e-02	ci left: 1.430204e-03	ci right 1.552316e-03	k: 2310	n:1550000
Cons ci ratio: 5.413030e-03	ci left: 2.521237e-01	ci right 2.534927e-01	k: 391852	n:1550000
KS ci ratio: 1.112311e-01	ci left: 7.561032e-04	ci right 8.457790e-04	k: 1240	n:1550000
LRRC32   1550000 perm   1172 sec   (1322 perm/sec)   p_kst 8.000000e-04   p_cons 2.528077e-01   p_joint 1.490323e-03

Joint ci ratio: 8.123638e-02	ci left: 1.429828e-03	ci right 1.551522e-03	k: 2324	n:1560000
Cons ci ratio: 5.395955e-03	ci left: 2.521047e-01	ci right 2.534693e-01	k: 394347	n:1560000
KS ci ratio: 1.107855e-01	ci left: 7.574886e-04	ci right 8.469455e-04	k: 1250	n:1560000
LRRC32   1560000 perm   1185 sec   (1316 perm/sec)   p_kst 8.012821e-04   p_cons 2.527865e-01   p_joint 1.489744e-03

Joint ci ratio: 7.579851e-02	ci left: 1.636163e-03	ci right 1.765687e-03	k: 2669	n:1570000
Cons ci ratio: 5.378398e-03	ci left: 2.521311e-01	ci right 2.534914e-01	k: 396913	n:1570000
KS ci ratio: 1.105209e-01	ci left: 7.563797e-04	ci right 8.454783e-04	k: 1256	n:1570000
LRRC32   1570000 perm   1198 sec   (1310 perm/sec)   p_kst 8.000000e-04   p_cons 2.528108e-01   p_joint 1.700000e-03

Joint ci ratio: 7.555836e-02	ci left: 1.636363e-03	ci right 1.765474e-03	k: 2686	n:1580000
Cons ci ratio: 5.361774e-03	ci left: 2.521035e-01	ci right 2.534594e-01	k: 399394	n:1580000
KS ci ratio: 1.101709e-01	ci left: 7.565161e-04	ci right 8.453302e-04	k: 1264	n:1580000
LRRC32   1580000 perm   1211 sec   (1305 perm/sec)   p_kst 8.000000e-04   p_cons 2.527810e-01   p_joint 1.700000e-03

Joint ci ratio: 7.548844e-02	ci left: 1.629157e-03	ci right 1.757575e-03	k: 2691	n:1590000
Cons ci ratio: 5.345151e-03	ci left: 2.520869e-01	ci right 2.534385e-01	k: 401892	n:1590000
KS ci ratio: 1.099106e-01	ci left: 7.554278e-04	ci right 8.438911e-04	k: 1270	n:1590000
LRRC32   1590000 perm   1224 sec   (1299 perm/sec)   p_kst 7.987421e-04   p_cons 2.527623e-01   p_joint 1.692453e-03

Joint ci ratio: 7.565794e-02	ci left: 1.611615e-03	ci right 1.738949e-03	k: 2679	n:1600000
Cons ci ratio: 5.329018e-03	ci left: 2.520468e-01	ci right 2.533941e-01	k: 404352	n:1600000
KS ci ratio: 1.096951e-01	ci left: 7.537455e-04	ci right 8.418276e-04	k: 1275	n:1600000
LRRC32   1600000 perm   1238 sec   (1293 perm/sec)   p_kst 7.968750e-04   p_cons 2.527200e-01   p_joint 1.674375e-03

Joint ci ratio: 7.547519e-02	ci left: 1.609527e-03	ci right 1.736375e-03	k: 2692	n:1610000
Cons ci ratio: 5.311684e-03	ci left: 2.521027e-01	ci right 2.534460e-01	k: 406966	n:1610000
KS ci ratio: 1.093529e-01	ci left: 7.538967e-04	ci right 8.417039e-04	k: 1283	n:1610000
LRRC32   1610000 perm   1251 sec   (1287 perm/sec)   p_kst 7.968944e-04   p_cons 2.527739e-01   p_joint 1.672050e-03

Joint ci ratio: 7.526591e-02	ci left: 1.608677e-03	ci right 1.735091e-03	k: 2707	n:1620000
Cons ci ratio: 5.295029e-03	ci left: 2.521216e-01	ci right 2.534607e-01	k: 409521	n:1620000
KS ci ratio: 1.091831e-01	ci left: 7.516446e-04	ci right 8.390448e-04	k: 1287	n:1620000
LRRC32   1620000 perm   1264 sec   (1282 perm/sec)   p_kst 7.944444e-04   p_cons 2.527907e-01   p_joint 1.670988e-03

Joint ci ratio: 7.508598e-02	ci left: 1.606633e-03	ci right 1.732572e-03	k: 2720	n:1630000
Cons ci ratio: 5.278495e-03	ci left: 2.521427e-01	ci right 2.534778e-01	k: 412080	n:1630000
KS ci ratio: 1.087197e-01	ci left: 7.535979e-04	ci right 8.408295e-04	k: 1298	n:1630000
LRRC32   1630000 perm   1277 sec   (1276 perm/sec)   p_kst 7.963190e-04   p_cons 2.528098e-01   p_joint 1.668712e-03

Joint ci ratio: 7.479780e-02	ci left: 1.609401e-03	ci right 1.735052e-03	k: 2741	n:1640000
Cons ci ratio: 5.262115e-03	ci left: 2.521636e-01	ci right 2.534946e-01	k: 414639	n:1640000
KS ci ratio: 1.083865e-01	ci left: 7.537484e-04	ci right 8.407130e-04	k: 1306	n:1640000
LRRC32   1640000 perm   1291 sec   (1270 perm/sec)   p_kst 7.963415e-04   p_cons 2.528287e-01   p_joint 1.671341e-03

Joint ci ratio: 7.478453e-02	ci left: 1.600242e-03	ci right 1.725154e-03	k: 2742	n:1650000
Cons ci ratio: 5.246611e-03	ci left: 2.521321e-01	ci right 2.534590e-01	k: 417112	n:1650000
KS ci ratio: 1.080152e-01	ci left: 7.544872e-04	ci right 8.412198e-04	k: 1315	n:1650000
LRRC32   1650000 perm   1305 sec   (1265 perm/sec)   p_kst 7.969697e-04   p_cons 2.527952e-01   p_joint 1.661818e-03

Joint ci ratio: 7.455385e-02	ci left: 1.600652e-03	ci right 1.725194e-03	k: 2759	n:1660000
Cons ci ratio: 5.230024e-03	ci left: 2.521889e-01	ci right 2.535119e-01	k: 419731	n:1660000
KS ci ratio: 1.077291e-01	ci left: 7.540452e-04	ci right 8.404828e-04	k: 1322	n:1660000
LRRC32   1660000 perm   1319 sec   (1259 perm/sec)   p_kst 7.963855e-04   p_cons 2.528500e-01   p_joint 1.662048e-03

Joint ci ratio: 7.456775e-02	ci left: 1.590479e-03	ci right 1.714253e-03	k: 2758	n:1670000
Cons ci ratio: 5.214512e-03	ci left: 2.521787e-01	ci right 2.534977e-01	k: 422239	n:1670000
KS ci ratio: 1.074452e-01	ci left: 7.536088e-04	ci right 8.397544e-04	k: 1329	n:1670000
LRRC32   1670000 perm   1332 sec   (1253 perm/sec)   p_kst 7.958084e-04   p_cons 2.528377e-01   p_joint 1.651497e-03

Joint ci ratio: 7.431226e-02	ci left: 1.592111e-03	ci right 1.715570e-03	k: 2777	n:1680000
Cons ci ratio: 5.198677e-03	ci left: 2.522018e-01	ci right 2.535169e-01	k: 424803	n:1680000
KS ci ratio: 1.072841e-01	ci left: 7.514400e-04	ci right 8.372008e-04	k: 1333	n:1680000
LRRC32   1680000 perm   1346 sec   (1248 perm/sec)   p_kst 7.934524e-04   p_cons 2.528589e-01   p_joint 1.652976e-03

Joint ci ratio: 7.519902e-02	ci left: 1.544946e-03	ci right 1.666239e-03	k: 2712	n:1690000
Cons ci ratio: 5.182621e-03	ci left: 2.522513e-01	ci right 2.535626e-01	k: 427412	n:1690000
KS ci ratio: 1.070437e-01	ci left: 7.504487e-04	ci right 8.358923e-04	k: 1339	n:1690000
LRRC32   1690000 perm   1360 sec   (1243 perm/sec)   p_kst 7.923077e-04   p_cons 2.529065e-01   p_joint 1.604734e-03

Joint ci ratio: 7.496450e-02	ci left: 1.545671e-03	ci right 1.666626e-03	k: 2729	n:1700000
Cons ci ratio: 5.168555e-03	ci left: 2.521656e-01	ci right 2.534729e-01	k: 429792	n:1700000
KS ci ratio: 1.067256e-01	ci left: 7.506144e-04	ci right 8.358070e-04	k: 1347	n:1700000
LRRC32   1700000 perm   1374 sec   (1237 perm/sec)   p_kst 7.923529e-04   p_cons 2.528188e-01   p_joint 1.605294e-03

Joint ci ratio: 7.493736e-02	ci left: 1.537779e-03	ci right 1.658071e-03	k: 2731	n:1710000
Cons ci ratio: 5.153749e-03	ci left: 2.521435e-01	ci right 2.534469e-01	k: 432279	n:1710000
KS ci ratio: 1.064890e-01	ci left: 7.496400e-04	ci right 8.345215e-04	k: 1353	n:1710000
LRRC32   1710000 perm   1388 sec   (1232 perm/sec)   p_kst 7.912281e-04   p_cons 2.527947e-01   p_joint 1.597076e-03

Joint ci ratio: 7.674551e-02	ci left: 1.456399e-03	ci right 1.573197e-03	k: 2604	n:1720000
Cons ci ratio: 5.138958e-03	ci left: 2.521297e-01	ci right 2.534293e-01	k: 434780	n:1720000
KS ci ratio: 1.063321e-01	ci left: 7.475453e-04	ci right 8.320572e-04	k: 1357	n:1720000
LRRC32   1720000 perm   1402 sec   (1227 perm/sec)   p_kst 7.889535e-04   p_cons 2.527791e-01   p_joint 1.513953e-03

Joint ci ratio: 7.655477e-02	ci left: 1.455351e-03	ci right 1.571762e-03	k: 2617	n:1730000
Cons ci ratio: 5.123840e-03	ci left: 2.521496e-01	ci right 2.534454e-01	k: 437339	n:1730000
KS ci ratio: 1.062150e-01	ci left: 7.449122e-04	ci right 8.290278e-04	k: 1360	n:1730000
LRRC32   1730000 perm   1416 sec   (1222 perm/sec)   p_kst 7.861272e-04   p_cons 2.527971e-01   p_joint 1.512717e-03

Joint ci ratio: 7.629288e-02	ci left: 1.457134e-03	ci right 1.573271e-03	k: 2635	n:1740000
Cons ci ratio: 5.109025e-03	ci left: 2.521566e-01	ci right 2.534488e-01	k: 439876	n:1740000
KS ci ratio: 1.060205e-01	ci left: 7.434283e-04	ci right 8.272131e-04	k: 1365	n:1740000
LRRC32   1740000 perm   1430 sec   (1217 perm/sec)   p_kst 7.844828e-04   p_cons 2.528023e-01   p_joint 1.514368e-03

Joint ci ratio: 7.614869e-02	ci left: 1.454413e-03	ci right 1.570104e-03	k: 2645	n:1750000
Cons ci ratio: 5.094029e-03	ci left: 2.521865e-01	ci right 2.534749e-01	k: 442453	n:1750000
KS ci ratio: 1.055961e-01	ci left: 7.452996e-04	ci right 8.289381e-04	k: 1376	n:1750000
LRRC32   1750000 perm   1445 sec   (1211 perm/sec)   p_kst 7.862857e-04   p_cons 2.528303e-01   p_joint 1.511429e-03

Joint ci ratio: 7.587667e-02	ci left: 1.456739e-03	ci right 1.572184e-03	k: 2664	n:1760000
Cons ci ratio: 5.079684e-03	ci left: 2.521773e-01	ci right 2.534621e-01	k: 444962	n:1760000
KS ci ratio: 1.051768e-01	ci left: 7.471502e-04	ci right 8.306429e-04	k: 1387	n:1760000
LRRC32   1760000 perm   1459 sec   (1206 perm/sec)   p_kst 7.880682e-04   p_cons 2.528193e-01   p_joint 1.513636e-03

Joint ci ratio: 7.563578e-02	ci left: 1.457932e-03	ci right 1.573088e-03	k: 2681	n:1770000
Cons ci ratio: 5.065362e-03	ci left: 2.521757e-01	ci right 2.534568e-01	k: 447484	n:1770000
KS ci ratio: 1.049126e-01	ci left: 7.467799e-04	ci right 8.300087e-04	k: 1394	n:1770000
LRRC32   1770000 perm   1474 sec   (1201 perm/sec)   p_kst 7.875706e-04   p_cons 2.528158e-01   p_joint 1.514689e-03

Joint ci ratio: 7.563610e-02	ci left: 1.449741e-03	ci right 1.564250e-03	k: 2681	n:1780000
Cons ci ratio: 5.051069e-03	ci left: 2.521807e-01	ci right 2.534583e-01	k: 450018	n:1780000
KS ci ratio: 1.045758e-01	ci left: 7.475083e-04	ci right 8.305343e-04	k: 1403	n:1780000
LRRC32   1780000 perm   1488 sec   (1196 perm/sec)   p_kst 7.882022e-04   p_cons 2.528191e-01   p_joint 1.506180e-03

Joint ci ratio: 7.553776e-02	ci left: 1.445478e-03	ci right 1.559496e-03	k: 2688	n:1790000
Cons ci ratio: 5.036569e-03	ci left: 2.522103e-01	ci right 2.534843e-01	k: 452596	n:1790000
KS ci ratio: 1.045015e-01	ci left: 7.444203e-04	ci right 8.270410e-04	k: 1405	n:1790000
LRRC32   1790000 perm   1503 sec   (1191 perm/sec)   p_kst 7.849162e-04   p_cons 2.528469e-01   p_joint 1.501676e-03

Joint ci ratio: 7.530007e-02	ci left: 1.446714e-03	ci right 1.560455e-03	k: 2705	n:1800000
Cons ci ratio: 5.022785e-03	ci left: 2.521952e-01	ci right 2.534656e-01	k: 455094	n:1800000
KS ci ratio: 1.041318e-01	ci left: 7.456953e-04	ci right 8.281468e-04	k: 1415	n:1800000
LRRC32   1800000 perm   1517 sec   (1186 perm/sec)   p_kst 7.861111e-04   p_cons 2.528300e-01   p_joint 1.502778e-03

Joint ci ratio: 7.509223e-02	ci left: 1.446853e-03	ci right 1.560277e-03	k: 2720	n:1810000
Cons ci ratio: 5.008885e-03	ci left: 2.521973e-01	ci right 2.534642e-01	k: 457623	n:1810000
KS ci ratio: 1.037660e-01	ci left: 7.469567e-04	ci right 8.292398e-04	k: 1425	n:1810000
LRRC32   1810000 perm   1532 sec   (1182 perm/sec)   p_kst 7.872928e-04   p_cons 2.528304e-01   p_joint 1.502762e-03

Joint ci ratio: 7.484502e-02	ci left: 1.448608e-03	ci right 1.561779e-03	k: 2738	n:1820000
Cons ci ratio: 4.995638e-03	ci left: 2.521588e-01	ci right 2.534222e-01	k: 460078	n:1820000
KS ci ratio: 1.032961e-01	ci left: 7.498105e-04	ci right 8.320112e-04	k: 1438	n:1820000
LRRC32   1820000 perm   1547 sec   (1177 perm/sec)   p_kst 7.901099e-04   p_cons 2.527901e-01   p_joint 1.504396e-03

Joint ci ratio: 7.468166e-02	ci left: 1.447127e-03	ci right 1.559925e-03	k: 2750	n:1830000
Cons ci ratio: 4.981941e-03	ci left: 2.521628e-01	ci right 2.534227e-01	k: 462610	n:1830000
KS ci ratio: 1.029745e-01	ci left: 7.505043e-04	ci right 8.325095e-04	k: 1447	n:1830000
LRRC32   1830000 perm   1562 sec   (1172 perm/sec)   p_kst 7.907104e-04   p_cons 2.527923e-01   p_joint 1.502732e-03

Joint ci ratio: 7.495534e-02	ci left: 1.428595e-03	ci right 1.540375e-03	k: 2730	n:1840000
Cons ci ratio: 4.968684e-03	ci left: 2.521417e-01	ci right 2.533982e-01	k: 465096	n:1840000
KS ci ratio: 1.027619e-01	ci left: 7.496025e-04	ci right 8.313298e-04	k: 1453	n:1840000
LRRC32   1840000 perm   1577 sec   (1167 perm/sec)   p_kst 7.896739e-04   p_cons 2.527696e-01   p_joint 1.483696e-03

Joint ci ratio: 6.823971e-02	ci left: 1.719769e-03	ci right 1.841799e-03	k: 3293	n:1850000
Cons ci ratio: 4.955277e-03	ci left: 2.521404e-01	ci right 2.533934e-01	k: 467618	n:1850000
KS ci ratio: 1.024103e-01	ci left: 7.508173e-04	ci right 8.323801e-04	k: 1463	n:1850000
LRRC32   1850000 perm   1592 sec   (1162 perm/sec)   p_kst 7.908108e-04   p_cons 2.527665e-01   p_joint 1.780000e-03

Joint ci ratio: 6.812618e-02	ci left: 1.716336e-03	ci right 1.837911e-03	k: 3304	n:1860000
Cons ci ratio: 4.941852e-03	ci left: 2.521487e-01	ci right 2.533983e-01	k: 470158	n:1860000
KS ci ratio: 1.020969e-01	ci left: 7.514956e-04	ci right 8.328674e-04	k: 1472	n:1860000
LRRC32   1860000 perm   1607 sec   (1157 perm/sec)   p_kst 7.913978e-04   p_cons 2.527731e-01   p_joint 1.776344e-03

Joint ci ratio: 6.795165e-02	ci left: 1.716094e-03	ci right 1.837329e-03	k: 3321	n:1870000
Cons ci ratio: 4.928424e-03	ci left: 2.521654e-01	ci right 2.534118e-01	k: 472714	n:1870000
KS ci ratio: 1.017864e-01	ci left: 7.521671e-04	ci right 8.333490e-04	k: 1481	n:1870000
LRRC32   1870000 perm   1622 sec   (1153 perm/sec)   p_kst 7.919786e-04   p_cons 2.527882e-01   p_joint 1.775936e-03

Joint ci ratio: 6.775814e-02	ci left: 1.716901e-03	ci right 1.837833e-03	k: 3340	n:1880000
Cons ci ratio: 4.915374e-03	ci left: 2.521613e-01	ci right 2.534043e-01	k: 475231	n:1880000
KS ci ratio: 1.016152e-01	ci left: 7.507581e-04	ci right 8.316435e-04	k: 1486	n:1880000
LRRC32   1880000 perm   1637 sec   (1148 perm/sec)   p_kst 7.904255e-04   p_cons 2.527824e-01   p_joint 1.776596e-03

Joint ci ratio: 6.755620e-02	ci left: 1.718220e-03	ci right 1.838870e-03	k: 3360	n:1890000
Cons ci ratio: 4.902908e-03	ci left: 2.521202e-01	ci right 2.533599e-01	k: 477678	n:1890000
KS ci ratio: 1.014789e-01	ci left: 7.488484e-04	ci right 8.294135e-04	k: 1490	n:1890000
LRRC32   1890000 perm   1652 sec   (1144 perm/sec)   p_kst 7.883598e-04   p_cons 2.527397e-01   p_joint 1.777778e-03

Joint ci ratio: 6.733610e-02	ci left: 1.720560e-03	ci right 1.840966e-03	k: 3382	n:1900000
Cons ci ratio: 4.890189e-03	ci left: 2.521064e-01	ci right 2.533428e-01	k: 480176	n:1900000
KS ci ratio: 1.011740e-01	ci left: 7.495239e-04	ci right 8.299050e-04	k: 1499	n:1900000
LRRC32   1900000 perm   1668 sec   (1139 perm/sec)   p_kst 7.889474e-04   p_cons 2.527242e-01   p_joint 1.780000e-03

Joint ci ratio: 6.718736e-02	ci left: 1.719274e-03	ci right 1.839313e-03	k: 3397	n:1910000
Cons ci ratio: 4.877082e-03	ci left: 2.521304e-01	ci right 2.533636e-01	k: 482746	n:1910000
KS ci ratio: 1.010731e-01	ci left: 7.471306e-04	ci right 8.271704e-04	k: 1502	n:1910000
LRRC32   1910000 perm   1683 sec   (1135 perm/sec)   p_kst 7.863874e-04   p_cons 2.527466e-01   p_joint 1.778534e-03

Joint ci ratio: 6.712833e-02	ci left: 1.713391e-03	ci right 1.832911e-03	k: 3403	n:1920000
Cons ci ratio: 4.864267e-03	ci left: 2.521396e-01	ci right 2.533695e-01	k: 485288	n:1920000
KS ci ratio: 1.008052e-01	ci left: 7.473008e-04	ci right 8.271340e-04	k: 1510	n:1920000
LRRC32   1920000 perm   1698 sec   (1130 perm/sec)   p_kst 7.864583e-04   p_cons 2.527542e-01   p_joint 1.772396e-03

Joint ci ratio: 6.697115e-02	ci left: 1.712665e-03	ci right 1.831843e-03	k: 3419	n:1930000
Cons ci ratio: 4.851899e-03	ci left: 2.521217e-01	ci right 2.533485e-01	k: 487778	n:1930000
KS ci ratio: 1.004732e-01	ci left: 7.484798e-04	ci right 8.281600e-04	k: 1520	n:1930000
LRRC32   1930000 perm   1714 sec   (1126 perm/sec)   p_kst 7.875648e-04   p_cons 2.527347e-01   p_joint 1.771503e-03

Joint ci ratio: 6.748739e-02	ci left: 1.677482e-03	ci right 1.795147e-03	k: 3367	n:1940000
Cons ci ratio: 4.839829e-03	ci left: 2.520881e-01	ci right 2.533116e-01	k: 490237	n:1940000
KS ci ratio: 1.000791e-01	ci left: 7.506521e-04	ci right 8.302317e-04	k: 1532	n:1940000
LRRC32   1940000 perm   1730 sec   (1122 perm/sec)   p_kst 7.896907e-04   p_cons 2.526995e-01   p_joint 1.735567e-03

Joint ci ratio: 6.737756e-02	ci left: 1.674425e-03	ci right 1.791678e-03	k: 3378	n:1950000
Cons ci ratio: 4.827036e-03	ci left: 2.521184e-01	ci right 2.533388e-01	k: 492820	n:1950000
KS ci ratio: 9.991633e-02	ci left: 7.493025e-04	ci right 8.286024e-04	k: 1537	n:1950000
LRRC32   1950000 perm   1746 sec   (1117 perm/sec)   p_kst 7.882051e-04   p_cons 2.527282e-01   p_joint 1.732308e-03

Outputting figure to mutsig2_images.part000000000099/LRRC32.12_1997_1950000_0.00078821_0.25273_0.0017323.png
                gene_name: LRRC32
               theta_stop: 0.100 
                    nperm: 1950000 
                     p_ks: 0.00079 
        ci_ks_bounds_left: 0.00075 
       ci_ks_bounds_right: 0.00083 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 16 percent done.
LRRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
Cons ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
KS ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
LRRK1   10000 perm   2 sec   (4703 perm/sec)   p_kst 3.001000e-01   p_cons 2.330000e-01   p_joint 2.449000e-01

Outputting figure to mutsig2_images.part000000000099/LRRK1.11_6180_10000_0.3001_0.233_0.2449.png
                gene_name: LRRK1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 18 percent done.
LRRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
LRRN3   10000 perm   2 sec   (6259 perm/sec)   p_kst 4.063000e-01   p_cons 9.357000e-01   p_joint 5.651000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN3.10_2131_10000_0.4063_0.9357_0.5651.png
                gene_name: LRRN3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 20 percent done.
LRRC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
Cons ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
KS ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
LRRC6   10000 perm   2 sec   (5867 perm/sec)   p_kst 4.160000e-01   p_cons 5.770000e-02   p_joint 2.775000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
KS ci ratio: 3.279180e-02	ci left: 4.098548e-01	ci right 4.235694e-01	k: 8334	n:20000
LRRC6   20000 perm   4 sec   (5335 perm/sec)   p_kst 4.167000e-01   p_cons 5.570000e-02   p_joint 1.613000e-01

Joint ci ratio: 6.744676e-02	ci left: 9.777645e-02	ci right 1.046343e-01	k: 3035	n:30000
Cons ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
KS ci ratio: 2.763806e-02	ci left: 3.958130e-01	ci right 4.069394e-01	k: 12041	n:30000
LRRC6   30000 perm   6 sec   (5138 perm/sec)   p_kst 4.013667e-01   p_cons 5.593333e-02   p_joint 1.011667e-01

Outputting figure to mutsig2_images.part000000000099/LRRC6.9_1449_30000_0.40137_0.055933_0.10117.png
                gene_name: LRRC6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 21 percent done.
LRRTM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
LRRTM3   10000 perm   2 sec   (5356 perm/sec)   p_kst 4.354000e-01   p_cons 1.116000e-01   p_joint 3.295000e-01

Joint ci ratio: 4.595597e-02	ci left: 2.605803e-01	ci right 2.728876e-01	k: 5334	n:20000
Cons ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
KS ci ratio: 3.042265e-02	ci left: 4.466326e-01	ci right 4.604809e-01	k: 9071	n:20000
LRRTM3   20000 perm   4 sec   (4840 perm/sec)   p_kst 4.535500e-01   p_cons 1.040500e-01   p_joint 2.667000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM3.9_1758_20000_0.45355_0.10405_0.2667.png
                gene_name: LRRTM3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 23 percent done.
LRRTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
LRRTM1   10000 perm   1 sec   (7050 perm/sec)   p_kst 7.100000e-03   p_cons 1.279000e-01   p_joint 1.010000e-02

Joint ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
Cons ci ratio: 7.323477e-02	ci left: 1.206923e-01	ci right 1.299169e-01	k: 2505	n:20000
KS ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
LRRTM1   20000 perm   3 sec   (6222 perm/sec)   p_kst 6.600000e-03   p_cons 1.252500e-01   p_joint 6.350000e-03

Joint ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
Cons ci ratio: 6.177586e-02	ci left: 1.146658e-01	ci right 1.220083e-01	k: 3549	n:30000
KS ci ratio: 2.805235e-01	ci left: 5.560028e-03	ci right 7.404173e-03	k: 193	n:30000
LRRTM1   30000 perm   5 sec   (5917 perm/sec)   p_kst 6.433333e-03   p_cons 1.183000e-01   p_joint 1.216667e-02

Joint ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
Cons ci ratio: 5.016731e-02	ci left: 1.290929e-01	ci right 1.357606e-01	k: 5296	n:40000
KS ci ratio: 2.451775e-01	ci left: 5.571602e-03	ci right 7.151349e-03	k: 253	n:40000
LRRTM1   40000 perm   7 sec   (5710 perm/sec)   p_kst 6.325000e-03   p_cons 1.324000e-01   p_joint 8.600000e-03

Joint ci ratio: 1.417716e-01	ci left: 1.399139e-02	ci right 1.614545e-02	k: 752	n:50000
Cons ci ratio: 4.599981e-02	ci left: 1.238951e-01	ci right 1.297483e-01	k: 6340	n:50000
KS ci ratio: 2.147462e-01	ci left: 5.909029e-03	ci right 7.349151e-03	k: 330	n:50000
LRRTM1   50000 perm   9 sec   (5543 perm/sec)   p_kst 6.600000e-03   p_cons 1.268000e-01   p_joint 1.504000e-02

Joint ci ratio: 1.289565e-01	ci left: 1.418779e-02	ci right 1.615951e-02	k: 909	n:60000
Cons ci ratio: 4.187918e-02	ci left: 1.247419e-01	ci right 1.300942e-01	k: 7644	n:60000
KS ci ratio: 1.934064e-01	ci left: 6.142172e-03	ci right 7.472873e-03	k: 407	n:60000
LRRTM1   60000 perm   11 sec   (5401 perm/sec)   p_kst 6.783333e-03   p_cons 1.274000e-01   p_joint 1.515000e-02

Joint ci ratio: 1.251841e-01	ci left: 1.294884e-02	ci right 1.469180e-02	k: 966	n:70000
Cons ci ratio: 3.867372e-02	ci left: 1.255051e-01	ci right 1.304687e-01	k: 8958	n:70000
KS ci ratio: 1.809838e-01	ci left: 6.054469e-03	ci right 7.272681e-03	k: 465	n:70000
LRRTM1   70000 perm   13 sec   (5264 perm/sec)   p_kst 6.642857e-03   p_cons 1.279714e-01   p_joint 1.380000e-02

Joint ci ratio: 1.265583e-01	ci left: 1.109954e-02	ci right 1.261118e-02	k: 947	n:80000
Cons ci ratio: 3.620610e-02	ci left: 1.254813e-01	ci right 1.301207e-01	k: 10223	n:80000
KS ci ratio: 1.715088e-01	ci left: 5.930915e-03	ci right 7.055324e-03	k: 518	n:80000
LRRTM1   80000 perm   16 sec   (5145 perm/sec)   p_kst 6.475000e-03   p_cons 1.277875e-01   p_joint 1.183750e-02

Joint ci ratio: 1.249876e-01	ci left: 1.013497e-02	ci right 1.149683e-02	k: 972	n:90000
Cons ci ratio: 3.573132e-02	ci left: 1.158440e-01	ci right 1.200696e-01	k: 10615	n:90000
KS ci ratio: 1.614048e-01	ci left: 5.985391e-03	ci right 7.046793e-03	k: 585	n:90000
LRRTM1   90000 perm   18 sec   (5041 perm/sec)   p_kst 6.500000e-03   p_cons 1.179444e-01   p_joint 1.080000e-02

Joint ci ratio: 1.222329e-01	ci left: 9.557384e-03	ci right 1.081127e-02	k: 1017	n:100000
Cons ci ratio: 3.396723e-02	ci left: 1.155301e-01	ci right 1.195321e-01	k: 11752	n:100000
KS ci ratio: 1.544542e-01	ci left: 5.905497e-03	ci right 6.903457e-03	k: 639	n:100000
LRRTM1   100000 perm   20 sec   (4944 perm/sec)   p_kst 6.390000e-03   p_cons 1.175200e-01   p_joint 1.017000e-02

Joint ci ratio: 1.260298e-01	ci left: 8.168445e-03	ci right 9.275873e-03	k: 958	n:110000
Cons ci ratio: 3.239117e-02	ci left: 1.155936e-01	ci right 1.194084e-01	k: 12924	n:110000
KS ci ratio: 1.499701e-01	ci left: 5.709633e-03	ci right 6.643964e-03	k: 678	n:110000
LRRTM1   110000 perm   23 sec   (4850 perm/sec)   p_kst 6.163636e-03   p_cons 1.174909e-01   p_joint 8.709091e-03

Joint ci ratio: 1.236929e-01	ci left: 7.786348e-03	ci right 8.820959e-03	k: 995	n:120000
Cons ci ratio: 3.095625e-02	ci left: 1.160473e-01	ci right 1.197045e-01	k: 14144	n:120000
KS ci ratio: 1.443450e-01	ci left: 5.667255e-03	ci right 6.556868e-03	k: 732	n:120000
LRRTM1   120000 perm   25 sec   (4764 perm/sec)   p_kst 6.100000e-03   p_cons 1.178667e-01   p_joint 8.291667e-03

Joint ci ratio: 9.874695e-02	ci left: 1.138514e-02	ci right 1.257524e-02	k: 1556	n:130000
Cons ci ratio: 2.973933e-02	ci left: 1.161364e-01	ci right 1.196499e-01	k: 15325	n:130000
KS ci ratio: 1.379054e-01	ci left: 5.750784e-03	ci right 6.609929e-03	k: 802	n:130000
LRRTM1   130000 perm   28 sec   (4682 perm/sec)   p_kst 6.169231e-03   p_cons 1.178846e-01   p_joint 1.196923e-02

Joint ci ratio: 9.688824e-02	ci left: 1.099687e-02	ci right 1.212350e-02	k: 1617	n:140000
Cons ci ratio: 2.865255e-02	ci left: 1.162364e-01	ci right 1.196223e-01	k: 16509	n:140000
KS ci ratio: 1.329485e-01	ci left: 5.760970e-03	ci right 6.588255e-03	k: 863	n:140000
LRRTM1   140000 perm   30 sec   (4603 perm/sec)   p_kst 6.164286e-03   p_cons 1.179214e-01   p_joint 1.155000e-02

Joint ci ratio: 9.747561e-02	ci left: 1.014644e-02	ci right 1.119260e-02	k: 1599	n:150000
Cons ci ratio: 2.764759e-02	ci left: 1.165438e-01	ci right 1.198177e-01	k: 17726	n:150000
KS ci ratio: 1.287005e-01	ci left: 5.750916e-03	ci right 6.548354e-03	k: 921	n:150000
LRRTM1   150000 perm   33 sec   (4525 perm/sec)   p_kst 6.140000e-03   p_cons 1.181733e-01   p_joint 1.066000e-02

Joint ci ratio: 9.609285e-02	ci left: 9.798842e-03	ci right 1.079402e-02	k: 1646	n:160000
Cons ci ratio: 2.674946e-02	ci left: 1.167524e-01	ci right 1.199240e-01	k: 18933	n:160000
KS ci ratio: 1.248995e-01	ci left: 5.736432e-03	ci right 6.506629e-03	k: 978	n:160000
LRRTM1   160000 perm   36 sec   (4452 perm/sec)   p_kst 6.112500e-03   p_cons 1.183312e-01   p_joint 1.028750e-02

Joint ci ratio: 9.937199e-02	ci left: 8.619623e-03	ci right 9.526650e-03	k: 1541	n:170000
Cons ci ratio: 2.595253e-02	ci left: 1.167859e-01	ci right 1.198624e-01	k: 20114	n:170000
KS ci ratio: 1.217123e-01	ci left: 5.695435e-03	ci right 6.439208e-03	k: 1030	n:170000
LRRTM1   170000 perm   39 sec   (4382 perm/sec)   p_kst 6.058824e-03   p_cons 1.183176e-01   p_joint 9.064706e-03

Joint ci ratio: 9.988847e-02	ci left: 8.059381e-03	ci right 8.912118e-03	k: 1526	n:180000
Cons ci ratio: 2.522015e-02	ci left: 1.168390e-01	ci right 1.198288e-01	k: 21299	n:180000
KS ci ratio: 1.181551e-01	ci left: 5.718526e-03	ci right 6.441965e-03	k: 1093	n:180000
LRRTM1   180000 perm   42 sec   (4307 perm/sec)   p_kst 6.072222e-03   p_cons 1.183278e-01   p_joint 8.477778e-03

Joint ci ratio: 9.833274e-02	ci left: 7.886671e-03	ci right 8.707385e-03	k: 1575	n:190000
Cons ci ratio: 2.454832e-02	ci left: 1.168719e-01	ci right 1.197818e-01	k: 22481	n:190000
KS ci ratio: 1.148426e-01	ci left: 5.744583e-03	ci right 6.449562e-03	k: 1157	n:190000
LRRTM1   190000 perm   45 sec   (4240 perm/sec)   p_kst 6.089474e-03   p_cons 1.183211e-01   p_joint 8.289474e-03

Joint ci ratio: 1.094744e-01	ci left: 6.021135e-03	ci right 6.723287e-03	k: 1273	n:200000
Cons ci ratio: 2.395618e-02	ci left: 1.166538e-01	ci right 1.194872e-01	k: 23613	n:200000
KS ci ratio: 1.079914e-01	ci left: 6.191405e-03	ci right 6.903011e-03	k: 1308	n:200000
LRRTM1   200000 perm   48 sec   (4175 perm/sec)   p_kst 6.540000e-03   p_cons 1.180650e-01   p_joint 6.365000e-03

Joint ci ratio: 1.083001e-01	ci left: 5.864091e-03	ci right 6.540125e-03	k: 1301	n:210000
Cons ci ratio: 2.338028e-02	ci left: 1.166752e-01	ci right 1.194401e-01	k: 24791	n:210000
KS ci ratio: 1.056386e-01	ci left: 6.170019e-03	ci right 6.862756e-03	k: 1367	n:210000
LRRTM1   210000 perm   51 sec   (4113 perm/sec)   p_kst 6.509524e-03   p_cons 1.180524e-01   p_joint 6.195238e-03

Joint ci ratio: 1.060058e-01	ci left: 5.849686e-03	ci right 6.508881e-03	k: 1358	n:220000
Cons ci ratio: 2.283903e-02	ci left: 1.167406e-01	ci right 1.194422e-01	k: 25979	n:220000
KS ci ratio: 1.031065e-01	ci left: 6.190589e-03	ci right 6.867966e-03	k: 1435	n:220000
LRRTM1   220000 perm   54 sec   (4054 perm/sec)   p_kst 6.522727e-03   p_cons 1.180864e-01   p_joint 6.172727e-03

Joint ci ratio: 9.047533e-02	ci left: 7.729215e-03	ci right 8.465871e-03	k: 1861	n:230000
Cons ci ratio: 2.234350e-02	ci left: 1.167102e-01	ci right 1.193516e-01	k: 27146	n:230000
KS ci ratio: 1.011892e-01	ci left: 6.154448e-03	ci right 6.814603e-03	k: 1490	n:230000
LRRTM1   230000 perm   58 sec   (3996 perm/sec)   p_kst 6.478261e-03   p_cons 1.180261e-01   p_joint 8.091304e-03

Joint ci ratio: 8.886960e-02	ci left: 7.684136e-03	ci right 8.402822e-03	k: 1929	n:240000
Cons ci ratio: 2.189862e-02	ci left: 1.164962e-01	ci right 1.190797e-01	k: 28268	n:240000
KS ci ratio: 9.902105e-02	ci left: 6.166130e-03	ci right 6.812542e-03	k: 1556	n:240000
LRRTM1   240000 perm   61 sec   (3943 perm/sec)   p_kst 6.483333e-03   p_cons 1.177833e-01   p_joint 8.037500e-03

Outputting figure to mutsig2_images.part000000000099/LRRTM1.8_1573_240000_0.0064833_0.11778_0.0080375.png
                gene_name: LRRTM1
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.0065 
        ci_ks_bounds_left: 0.0062 
       ci_ks_bounds_right: 0.0068 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.0080 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0084 

Current progress: 25 percent done.
LSAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
KS ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
LSAMP   10000 perm   2 sec   (6641 perm/sec)   p_kst 3.571000e-01   p_cons 2.327000e-01   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000099/LSAMP.8_1045_10000_0.3571_0.2327_0.2972.png
                gene_name: LSAMP
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
LSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
Cons ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
LSP1   10000 perm   1 sec   (6974 perm/sec)   p_kst 1.701000e-01   p_cons 1.349000e-01   p_joint 1.355000e-01

Outputting figure to mutsig2_images.part000000000099/LSP1.7_1060_10000_0.1701_0.1349_0.1355.png
                gene_name: LSP1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
LRRC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
Cons ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
KS ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
LRRC40   10000 perm   2 sec   (6559 perm/sec)   p_kst 8.998000e-01   p_cons 2.191000e-01   p_joint 5.448000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC40.6_1869_10000_0.8998_0.2191_0.5448.png
                gene_name: LRRC40
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 30 percent done.
LRRC37B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
Cons ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
KS ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
LRRC37B   10000 perm   2 sec   (5899 perm/sec)   p_kst 9.015000e-01   p_cons 1.731000e-01   p_joint 5.453000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC37B.5_2892_10000_0.9015_0.1731_0.5453.png
                gene_name: LRRC37B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 32 percent done.
LRRC4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
Cons ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
KS ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
LRRC4B   10000 perm   2 sec   (6458 perm/sec)   p_kst 4.145000e-01   p_cons 5.254000e-01   p_joint 5.190000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4B.5_2150_10000_0.4145_0.5254_0.519.png
                gene_name: LRRC4B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 34 percent done.
LRRC50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
Cons ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
KS ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
LRRC50   10000 perm   2 sec   (6246 perm/sec)   p_kst 3.407000e-01   p_cons 2.952000e-01   p_joint 5.146000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC50.5_2226_10000_0.3407_0.2952_0.5146.png
                gene_name: LRRC50
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 36 percent done.
LRTM1
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
Cons ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
KS ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
LRTM1   10000 perm   1 sec   (7170 perm/sec)   p_kst 4.181000e-01   p_cons 5.780000e-01   p_joint 9.689000e-01

Outputting figure to mutsig2_images.part000000000099/LRTM1.3_1050_10000_0.4181_0.578_0.9689.png
                gene_name: LRTM1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 38 percent done.
LRTM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.231198e-02	ci left: 7.467503e-01	ci right 7.637008e-01	k: 7553	n:10000
Cons ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
KS ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
LRTM2   10000 perm   1 sec   (6849 perm/sec)   p_kst 6.445000e-01   p_cons 8.381000e-01   p_joint 7.553000e-01

Outputting figure to mutsig2_images.part000000000099/LRTM2.5_1125_10000_0.6445_0.8381_0.7553.png
                gene_name: LRTM2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 39 percent done.
LRRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
LRRC2   10000 perm   1 sec   (6903 perm/sec)   p_kst 4.910000e-02   p_cons 6.447000e-01   p_joint 1.131000e-01

Joint ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
Cons ci ratio: 2.099597e-02	ci left: 6.286851e-01	ci right 6.420755e-01	k: 12708	n:20000
KS ci ratio: 1.241215e-01	ci left: 4.454455e-02	ci right 5.048789e-02	k: 949	n:20000
LRRC2   20000 perm   3 sec   (6126 perm/sec)   p_kst 4.745000e-02   p_cons 6.354000e-01   p_joint 1.170000e-01

Joint ci ratio: 7.694005e-02	ci left: 7.656125e-02	ci right 8.272045e-02	k: 2388	n:30000
Cons ci ratio: 1.704610e-02	ci left: 6.325655e-01	ci right 6.434745e-01	k: 19141	n:30000
KS ci ratio: 1.028316e-01	ci left: 4.381946e-02	ci right 4.860225e-02	k: 1385	n:30000
LRRC2   30000 perm   5 sec   (5841 perm/sec)   p_kst 4.616667e-02   p_cons 6.380333e-01   p_joint 7.960000e-02

Joint ci ratio: 5.575074e-02	ci left: 1.069249e-01	ci right 1.130818e-01	k: 4399	n:40000
Cons ci ratio: 1.475474e-02	ci left: 6.335438e-01	ci right 6.429861e-01	k: 25531	n:40000
KS ci ratio: 8.900463e-02	ci left: 4.418782e-02	ci right 4.832838e-02	k: 1849	n:40000
LRRC2   40000 perm   7 sec   (5642 perm/sec)   p_kst 4.622500e-02   p_cons 6.382750e-01   p_joint 1.099750e-01

Outputting figure to mutsig2_images.part000000000099/LRRC2.4_1148_40000_0.046225_0.63828_0.10998.png
                gene_name: LRRC2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
LRRC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
Cons ci ratio: 1.160542e-01	ci left: 9.642692e-02	ci right 1.084058e-01	k: 1023	n:10000
KS ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
LRRC27   10000 perm   2 sec   (6600 perm/sec)   p_kst 1.266000e-01   p_cons 1.023000e-01   p_joint 9.440000e-02

Joint ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
Cons ci ratio: 7.947324e-02	ci left: 1.041236e-01	ci right 1.127906e-01	k: 2168	n:20000
KS ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
LRRC27   20000 perm   3 sec   (5882 perm/sec)   p_kst 1.281000e-01   p_cons 1.084000e-01   p_joint 8.155000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC27.4_1815_20000_0.1281_0.1084_0.08155.png
                gene_name: LRRC27
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.085 

Current progress: 43 percent done.
LRRC8C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
Cons ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
KS ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
LRRC8C   10000 perm   2 sec   (6259 perm/sec)   p_kst 4.537000e-01   p_cons 9.191000e-01   p_joint 6.587000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8C.4_2420_10000_0.4537_0.9191_0.6587.png
                gene_name: LRRC8C
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 45 percent done.
LRRC8E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
Cons ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
KS ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
LRRC8E   10000 perm   2 sec   (6415 perm/sec)   p_kst 3.596000e-01   p_cons 5.040000e-01   p_joint 3.722000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8E.4_2399_10000_0.3596_0.504_0.3722.png
                gene_name: LRRC8E
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 46 percent done.
LRRCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
LRRCC1   10000 perm   2 sec   (5952 perm/sec)   p_kst 2.666000e-01   p_cons 4.930000e-02   p_joint 8.300000e-02

Joint ci ratio: 6.539360e-02	ci left: 1.472968e-01	ci right 1.573045e-01	k: 3045	n:20000
Cons ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
KS ci ratio: 4.560614e-02	ci left: 2.635581e-01	ci right 2.759089e-01	k: 5394	n:20000
LRRCC1   20000 perm   4 sec   (5323 perm/sec)   p_kst 2.697000e-01   p_cons 4.455000e-02   p_joint 1.522500e-01

Joint ci ratio: 6.705428e-02	ci left: 9.882710e-02	ci right 1.057168e-01	k: 3067	n:30000
Cons ci ratio: 1.032226e-01	ci left: 4.349433e-02	ci right 4.826078e-02	k: 1375	n:30000
KS ci ratio: 3.726413e-02	ci left: 2.644187e-01	ci right 2.744926e-01	k: 8083	n:30000
LRRCC1   30000 perm   6 sec   (5091 perm/sec)   p_kst 2.694333e-01   p_cons 4.583333e-02   p_joint 1.022333e-01

Joint ci ratio: 5.498839e-02	ci left: 1.096167e-01	ci right 1.158396e-01	k: 4508	n:40000
Cons ci ratio: 8.974463e-02	ci left: 4.347829e-02	ci right 4.758801e-02	k: 1820	n:40000
KS ci ratio: 3.258960e-02	ci left: 2.612765e-01	ci right 2.699575e-01	k: 10624	n:40000
LRRCC1   40000 perm   8 sec   (4921 perm/sec)   p_kst 2.656000e-01   p_cons 4.550000e-02   p_joint 1.127000e-01

Outputting figure to mutsig2_images.part000000000099/LRRCC1.4_3175_40000_0.2656_0.0455_0.1127.png
                gene_name: LRRCC1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
LRRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
Cons ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
KS ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
LRRN1   10000 perm   2 sec   (6541 perm/sec)   p_kst 4.645000e-01   p_cons 1.822000e-01   p_joint 6.170000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN1.4_2155_10000_0.4645_0.1822_0.617.png
                gene_name: LRRN1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 50 percent done.
LRRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
Cons ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
KS ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
LRRN4   10000 perm   1 sec   (6830 perm/sec)   p_kst 2.377000e-01   p_cons 2.778000e-01   p_joint 4.163000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN4.4_2239_10000_0.2377_0.2778_0.4163.png
                gene_name: LRRN4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 52 percent done.
LSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
Cons ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
LSG1   10000 perm   2 sec   (6475 perm/sec)   p_kst 3.708000e-01   p_cons 1.314000e-01   p_joint 2.634000e-01

Joint ci ratio: 4.749664e-02	ci left: 2.479783e-01	ci right 2.600933e-01	k: 5080	n:20000
Cons ci ratio: 7.090811e-02	ci left: 1.278300e-01	ci right 1.372771e-01	k: 2650	n:20000
KS ci ratio: 3.668711e-02	ci left: 3.566796e-01	ci right 3.700602e-01	k: 7267	n:20000
LSG1   20000 perm   3 sec   (5755 perm/sec)   p_kst 3.633500e-01   p_cons 1.325000e-01   p_joint 2.540000e-01

Outputting figure to mutsig2_images.part000000000099/LSG1.4_2033_20000_0.36335_0.1325_0.254.png
                gene_name: LSG1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 54 percent done.
LSM14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
Cons ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
LSM14A   10000 perm   1 sec   (6784 perm/sec)   p_kst 2.584000e-01   p_cons 5.383000e-01   p_joint 6.365000e-01

Outputting figure to mutsig2_images.part000000000099/LSM14A.4_1460_10000_0.2584_0.5383_0.6365.png
                gene_name: LSM14A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 55 percent done.
LRRC37A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
Cons ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
KS ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
LRRC37A2   10000 perm   2 sec   (5512 perm/sec)   p_kst 1.240000e-01   p_cons 1.964000e-01   p_joint 2.206000e-01

Joint ci ratio: 5.650691e-02	ci left: 1.884406e-01	ci right 1.994485e-01	k: 3878	n:20000
Cons ci ratio: 5.642571e-02	ci left: 1.888857e-01	ci right 1.999033e-01	k: 3887	n:20000
KS ci ratio: 7.397914e-02	ci left: 1.185274e-01	ci right 1.276825e-01	k: 2461	n:20000
LRRC37A2   20000 perm   4 sec   (4963 perm/sec)   p_kst 1.230500e-01   p_cons 1.943500e-01   p_joint 1.939000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC37A2.3_5159_20000_0.12305_0.19435_0.1939.png
                gene_name: LRRC37A2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 57 percent done.
LRRC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
KS ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
LRRC37A3   10000 perm   2 sec   (5760 perm/sec)   p_kst 1.122000e-01   p_cons 2.548000e-01   p_joint 1.692000e-01

Joint ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
Cons ci ratio: 4.718539e-02	ci left: 2.504585e-01	ci right 2.626124e-01	k: 5130	n:20000
KS ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
LRRC37A3   20000 perm   4 sec   (5210 perm/sec)   p_kst 1.098000e-01   p_cons 2.565000e-01   p_joint 1.352500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC37A3.3_4953_20000_0.1098_0.2565_0.13525.png
                gene_name: LRRC37A3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 59 percent done.
LRRC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
KS ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
LRRC3B   10000 perm   1 sec   (7336 perm/sec)   p_kst 9.369000e-01   p_cons 8.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC3B.3_784_10000_0.9369_0.8079_1.png
                gene_name: LRRC3B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
LRRC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
LRRC4   10000 perm   1 sec   (7026 perm/sec)   p_kst 4.715000e-01   p_cons 9.334000e-01   p_joint 5.358000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4.3_1966_10000_0.4715_0.9334_0.5358.png
                gene_name: LRRC4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 62 percent done.
LRRC49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
Cons ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
KS ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
LRRC49   10000 perm   1 sec   (6869 perm/sec)   p_kst 6.458000e-01   p_cons 3.923000e-01   p_joint 6.677000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC49.3_2125_10000_0.6458_0.3923_0.6677.png
                gene_name: LRRC49
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 64 percent done.
LRRC59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
KS ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
LRRC59   10000 perm   1 sec   (7419 perm/sec)   p_kst 5.749000e-01   p_cons 8.166000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC59.3_952_10000_0.5749_0.8166_1.png
                gene_name: LRRC59
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
LRRC8D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
Cons ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
LRRC8D   10000 perm   2 sec   (6391 perm/sec)   p_kst 9.250000e-02   p_cons 5.039000e-01   p_joint 2.065000e-01

Joint ci ratio: 8.195287e-02	ci left: 9.842765e-02	ci right 1.068883e-01	k: 2052	n:20000
Cons ci ratio: 2.747369e-02	ci left: 4.974455e-01	ci right 5.113532e-01	k: 10088	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
LRRC8D   20000 perm   4 sec   (5676 perm/sec)   p_kst 9.680000e-02   p_cons 5.044000e-01   p_joint 1.026000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8D.3_2581_20000_0.0968_0.5044_0.1026.png
                gene_name: LRRC8D
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 68 percent done.
LRRFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 1.787402e-02	ci left: 8.203566e-01	ci right 8.352519e-01	k: 8279	n:10000
LRRFIP1   10000 perm   2 sec   (6302 perm/sec)   p_kst 8.279000e-01   p_cons 4.756000e-01   p_joint 7.518000e-01

Outputting figure to mutsig2_images.part000000000099/LRRFIP1.3_3631_10000_0.8279_0.4756_0.7518.png
                gene_name: LRRFIP1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 70 percent done.
LRRIQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.070229e-03	ci left: 9.922835e-01	ci right 9.954183e-01	k: 9940	n:10000
Cons ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
LRRIQ4   10000 perm   1 sec   (7095 perm/sec)   p_kst 5.657000e-01   p_cons 9.401000e-01   p_joint 9.940000e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ4.3_1703_10000_0.5657_0.9401_0.994.png
                gene_name: LRRIQ4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 71 percent done.
LSM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
Cons ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
LSM11   10000 perm   1 sec   (7202 perm/sec)   p_kst 2.500000e-03   p_cons 1.530000e-02   p_joint 7.400000e-03

Joint ci ratio: 4.458536e-01	ci left: 2.995101e-03	ci right 4.753991e-03	k: 76	n:20000
Cons ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
KS ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
LSM11   20000 perm   3 sec   (6366 perm/sec)   p_kst 2.100000e-03   p_cons 1.655000e-02   p_joint 3.800000e-03

Joint ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
Cons ci ratio: 1.734854e-01	ci left: 1.528021e-02	ci right 1.821445e-02	k: 501	n:30000
KS ci ratio: 4.856811e-01	ci left: 1.643302e-03	ci right 2.723414e-03	k: 64	n:30000
LSM11   30000 perm   5 sec   (6061 perm/sec)   p_kst 2.133333e-03   p_cons 1.670000e-02   p_joint 1.700000e-03

Joint ci ratio: 3.083131e-01	ci left: 3.405185e-03	ci right 4.668493e-03	k: 160	n:40000
Cons ci ratio: 1.500535e-01	ci left: 1.551503e-02	ci right 1.805582e-02	k: 670	n:40000
KS ci ratio: 4.150515e-01	ci left: 1.764827e-03	ci right 2.709769e-03	k: 88	n:40000
LSM11   40000 perm   7 sec   (5836 perm/sec)   p_kst 2.200000e-03   p_cons 1.675000e-02   p_joint 4.000000e-03

Joint ci ratio: 3.028287e-01	ci left: 2.834815e-03	ci right 3.864181e-03	k: 166	n:50000
Cons ci ratio: 1.356798e-01	ci left: 1.530489e-02	ci right 1.755176e-02	k: 820	n:50000
KS ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
LSM11   50000 perm   9 sec   (5669 perm/sec)   p_kst 2.200000e-03   p_cons 1.640000e-02   p_joint 3.320000e-03

Joint ci ratio: 2.514764e-01	ci left: 3.526356e-03	ci right 4.555863e-03	k: 241	n:60000
Cons ci ratio: 1.248411e-01	ci left: 1.515651e-02	ci right 1.719068e-02	k: 969	n:60000
KS ci ratio: 3.382553e-01	ci left: 1.856288e-03	ci right 2.626461e-03	k: 133	n:60000
LSM11   60000 perm   11 sec   (5534 perm/sec)   p_kst 2.216667e-03   p_cons 1.615000e-02   p_joint 4.016667e-03

Joint ci ratio: 2.450307e-01	ci left: 3.196683e-03	ci right 4.102371e-03	k: 254	n:70000
Cons ci ratio: 1.152531e-01	ci left: 1.531938e-02	ci right 1.720674e-02	k: 1137	n:70000
KS ci ratio: 3.176063e-01	ci left: 1.827092e-03	ci right 2.529483e-03	k: 151	n:70000
LSM11   70000 perm   13 sec   (5412 perm/sec)   p_kst 2.157143e-03   p_cons 1.624286e-02   p_joint 3.628571e-03

Joint ci ratio: 2.450869e-01	ci left: 2.797024e-03	ci right 3.589682e-03	k: 254	n:80000
Cons ci ratio: 1.083003e-01	ci left: 1.523918e-02	ci right 1.699616e-02	k: 1288	n:80000
KS ci ratio: 2.985739e-01	ci left: 1.829396e-03	ci right 2.482550e-03	k: 171	n:80000
LSM11   80000 perm   15 sec   (5292 perm/sec)   p_kst 2.137500e-03   p_cons 1.610000e-02   p_joint 3.175000e-03

Joint ci ratio: 2.532254e-01	ci left: 2.319489e-03	ci right 3.002085e-03	k: 238	n:90000
Cons ci ratio: 1.019326e-01	ci left: 1.534196e-02	ci right 1.700055e-02	k: 1454	n:90000
KS ci ratio: 2.840848e-01	ci left: 1.811521e-03	ci right 2.421283e-03	k: 189	n:90000
LSM11   90000 perm   17 sec   (5179 perm/sec)   p_kst 2.100000e-03   p_cons 1.615556e-02   p_joint 2.644444e-03

Joint ci ratio: 2.481092e-01	ci left: 2.181238e-03	ci right 2.808175e-03	k: 248	n:100000
Cons ci ratio: 9.644943e-02	ci left: 1.546565e-02	ci right 1.704259e-02	k: 1624	n:100000
KS ci ratio: 2.676775e-01	ci left: 1.853786e-03	ci right 2.435696e-03	k: 213	n:100000
LSM11   100000 perm   20 sec   (5082 perm/sec)   p_kst 2.130000e-03   p_cons 1.624000e-02   p_joint 2.480000e-03

Joint ci ratio: 1.951534e-01	ci left: 3.297899e-03	ci right 4.019569e-03	k: 401	n:110000
Cons ci ratio: 9.127560e-02	ci left: 1.573765e-02	ci right 1.725164e-02	k: 1813	n:110000
KS ci ratio: 2.622352e-01	ci left: 1.761633e-03	ci right 2.301527e-03	k: 222	n:110000
LSM11   110000 perm   22 sec   (4983 perm/sec)   p_kst 2.018182e-03   p_cons 1.648182e-02   p_joint 3.645455e-03

Joint ci ratio: 2.683544e-01	ci left: 1.537013e-03	ci right 2.020908e-03	k: 212	n:120000
Cons ci ratio: 8.727569e-02	ci left: 1.581124e-02	ci right 1.726226e-02	k: 1983	n:120000
KS ci ratio: 2.267964e-01	ci left: 2.201788e-03	ci right 2.772680e-03	k: 297	n:120000
LSM11   120000 perm   25 sec   (4898 perm/sec)   p_kst 2.475000e-03   p_cons 1.652500e-02   p_joint 1.766667e-03

Joint ci ratio: 2.640616e-01	ci left: 1.469027e-03	ci right 1.922895e-03	k: 219	n:130000
Cons ci ratio: 8.328881e-02	ci left: 1.605557e-02	ci right 1.745842e-02	k: 2177	n:130000
KS ci ratio: 2.165029e-01	ci left: 2.243122e-03	ci right 2.794827e-03	k: 326	n:130000
LSM11   130000 perm   27 sec   (4815 perm/sec)   p_kst 2.507692e-03   p_cons 1.674615e-02   p_joint 1.684615e-03

Joint ci ratio: 2.593959e-01	ci left: 1.417485e-03	ci right 1.846437e-03	k: 227	n:140000
Cons ci ratio: 8.030333e-02	ci left: 1.606321e-02	ci right 1.741406e-02	k: 2342	n:140000
KS ci ratio: 2.080813e-01	ci left: 2.265509e-03	ci right 2.798286e-03	k: 353	n:140000
LSM11   140000 perm   30 sec   (4725 perm/sec)   p_kst 2.521429e-03   p_cons 1.672857e-02   p_joint 1.621429e-03

Joint ci ratio: 2.497242e-01	ci left: 1.435335e-03	ci right 1.850977e-03	k: 245	n:150000
Cons ci ratio: 7.730459e-02	ci left: 1.620140e-02	ci right 1.751070e-02	k: 2527	n:150000
KS ci ratio: 2.003084e-01	ci left: 2.291603e-03	ci right 2.807925e-03	k: 381	n:150000
LSM11   150000 perm   32 sec   (4644 perm/sec)   p_kst 2.540000e-03   p_cons 1.684667e-02   p_joint 1.633333e-03

Joint ci ratio: 2.415181e-01	ci left: 1.445339e-03	ci right 1.848065e-03	k: 262	n:160000
Cons ci ratio: 7.491394e-02	ci left: 1.619430e-02	ci right 1.746079e-02	k: 2691	n:160000
KS ci ratio: 1.942987e-01	ci left: 2.290969e-03	ci right 2.789830e-03	k: 405	n:160000
LSM11   160000 perm   35 sec   (4565 perm/sec)   p_kst 2.531250e-03   p_cons 1.681875e-02   p_joint 1.637500e-03

Joint ci ratio: 2.114458e-01	ci left: 1.804359e-03	ci right 2.236435e-03	k: 342	n:170000
Cons ci ratio: 7.268044e-02	ci left: 1.621170e-02	ci right 1.744015e-02	k: 2859	n:170000
KS ci ratio: 1.899095e-01	ci left: 2.262592e-03	ci right 2.742860e-03	k: 424	n:170000
LSM11   170000 perm   38 sec   (4488 perm/sec)   p_kst 2.494118e-03   p_cons 1.681765e-02   p_joint 2.011765e-03

Joint ci ratio: 2.117673e-01	ci left: 1.698846e-03	ci right 2.106353e-03	k: 341	n:180000
Cons ci ratio: 7.096998e-02	ci left: 1.607482e-02	ci right 1.726305e-02	k: 2999	n:180000
KS ci ratio: 1.823382e-01	ci left: 2.327584e-03	ci right 2.799775e-03	k: 460	n:180000
LSM11   180000 perm   41 sec   (4411 perm/sec)   p_kst 2.555556e-03   p_cons 1.666111e-02   p_joint 1.894444e-03

Joint ci ratio: 2.055495e-01	ci left: 1.714187e-03	ci right 2.111783e-03	k: 362	n:190000
Cons ci ratio: 6.900697e-02	ci left: 1.612338e-02	ci right 1.728091e-02	k: 3172	n:190000
KS ci ratio: 1.772216e-01	ci left: 2.340792e-03	ci right 2.800910e-03	k: 487	n:190000
LSM11   190000 perm   44 sec   (4337 perm/sec)   p_kst 2.563158e-03   p_cons 1.669474e-02   p_joint 1.905263e-03

Joint ci ratio: 2.014319e-01	ci left: 1.699654e-03	ci right 2.085012e-03	k: 377	n:200000
Cons ci ratio: 6.729042e-02	ci left: 1.612323e-02	ci right 1.725084e-02	k: 3336	n:200000
KS ci ratio: 1.737004e-01	ci left: 2.319359e-03	ci right 2.765255e-03	k: 507	n:200000
LSM11   200000 perm   47 sec   (4267 perm/sec)   p_kst 2.535000e-03   p_cons 1.668000e-02   p_joint 1.885000e-03

Joint ci ratio: 2.108718e-01	ci left: 1.469665e-03	ci right 1.820512e-03	k: 344	n:210000
Cons ci ratio: 6.565778e-02	ci left: 1.614217e-02	ci right 1.724266e-02	k: 3504	n:210000
KS ci ratio: 1.698979e-01	ci left: 2.313727e-03	ci right 2.747805e-03	k: 530	n:210000
LSM11   210000 perm   50 sec   (4202 perm/sec)   p_kst 2.523810e-03   p_cons 1.668571e-02   p_joint 1.638095e-03

Joint ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
Cons ci ratio: 6.416514e-02	ci left: 1.614626e-02	ci right 1.722107e-02	k: 3669	n:220000
KS ci ratio: 1.655872e-01	ci left: 2.330490e-03	ci right 2.755514e-03	k: 558	n:220000
LSM11   220000 perm   53 sec   (4141 perm/sec)   p_kst 2.536364e-03   p_cons 1.667727e-02   p_joint 1.650000e-03

Joint ci ratio: 2.022624e-01	ci left: 1.465558e-03	ci right 1.799377e-03	k: 374	n:230000
Cons ci ratio: 6.289508e-02	ci left: 1.608605e-02	ci right 1.713488e-02	k: 3819	n:230000
KS ci ratio: 1.622832e-01	ci left: 2.325061e-03	ci right 2.739808e-03	k: 581	n:230000
LSM11   230000 perm   56 sec   (4081 perm/sec)   p_kst 2.526087e-03   p_cons 1.660435e-02   p_joint 1.626087e-03

Joint ci ratio: 2.140225e-01	ci left: 1.246491e-03	ci right 1.549090e-03	k: 334	n:240000
Cons ci ratio: 6.168965e-02	ci left: 1.603515e-02	ci right 1.705991e-02	k: 3970	n:240000
KS ci ratio: 1.595664e-01	ci left: 2.308159e-03	ci right 2.712338e-03	k: 601	n:240000
LSM11   240000 perm   60 sec   (4025 perm/sec)   p_kst 2.504167e-03   p_cons 1.654167e-02   p_joint 1.391667e-03

Joint ci ratio: 1.793128e-01	ci left: 1.736916e-03	ci right 2.082795e-03	k: 476	n:250000
Cons ci ratio: 6.040956e-02	ci left: 1.606337e-02	ci right 1.706789e-02	k: 4140	n:250000
KS ci ratio: 1.556083e-01	ci left: 2.334946e-03	ci right 2.732727e-03	k: 632	n:250000
LSM11   250000 perm   63 sec   (3971 perm/sec)   p_kst 2.528000e-03   p_cons 1.656000e-02   p_joint 1.904000e-03

Joint ci ratio: 1.875761e-01	ci left: 1.519641e-03	ci right 1.837787e-03	k: 435	n:260000
Cons ci ratio: 5.932504e-02	ci left: 1.602519e-02	ci right 1.700871e-02	k: 4293	n:260000
KS ci ratio: 1.513606e-01	ci left: 2.378289e-03	ci right 2.771392e-03	k: 668	n:260000
LSM11   260000 perm   66 sec   (3919 perm/sec)   p_kst 2.569231e-03   p_cons 1.651154e-02   p_joint 1.673077e-03

Joint ci ratio: 1.975935e-01	ci left: 1.311758e-03	ci right 1.602816e-03	k: 392	n:270000
Cons ci ratio: 5.829024e-02	ci left: 1.599364e-02	ci right 1.695752e-02	k: 4447	n:270000
KS ci ratio: 1.481820e-01	ci left: 2.393588e-03	ci right 2.780176e-03	k: 697	n:270000
LSM11   270000 perm   70 sec   (3867 perm/sec)   p_kst 2.581481e-03   p_cons 1.647037e-02   p_joint 1.451852e-03

Joint ci ratio: 1.939271e-01	ci left: 1.315855e-03	ci right 1.601766e-03	k: 407	n:280000
Cons ci ratio: 5.974327e-02	ci left: 1.469024e-02	ci right 1.559841e-02	k: 4239	n:280000
KS ci ratio: 1.453963e-01	ci left: 2.400990e-03	ci right 2.780851e-03	k: 724	n:280000
LSM11   280000 perm   73 sec   (3817 perm/sec)   p_kst 2.585714e-03   p_cons 1.513929e-02   p_joint 1.453571e-03

Joint ci ratio: 1.897847e-01	ci left: 1.329570e-03	ci right 1.611578e-03	k: 425	n:290000
Cons ci ratio: 5.870709e-02	ci left: 1.469666e-02	ci right 1.558893e-02	k: 4390	n:290000
KS ci ratio: 1.423828e-01	ci left: 2.421247e-03	ci right 2.795699e-03	k: 755	n:290000
LSM11   290000 perm   77 sec   (3767 perm/sec)   p_kst 2.603448e-03   p_cons 1.513793e-02   p_joint 1.465517e-03

Joint ci ratio: 1.867413e-01	ci left: 1.329718e-03	ci right 1.606723e-03	k: 439	n:300000
Cons ci ratio: 5.770367e-02	ci left: 1.471264e-02	ci right 1.559010e-02	k: 4544	n:300000
KS ci ratio: 1.399062e-01	ci left: 2.427362e-03	ci right 2.795685e-03	k: 782	n:300000
LSM11   300000 perm   81 sec   (3717 perm/sec)   p_kst 2.606667e-03   p_cons 1.514667e-02   p_joint 1.463333e-03

Joint ci ratio: 2.061953e-01	ci left: 1.044473e-03	ci right 1.287587e-03	k: 360	n:310000
Cons ci ratio: 5.667657e-02	ci left: 1.476587e-02	ci right 1.563032e-02	k: 4710	n:310000
KS ci ratio: 1.375545e-01	ci left: 2.433134e-03	ci right 2.795619e-03	k: 809	n:310000
LSM11   310000 perm   84 sec   (3669 perm/sec)   p_kst 2.609677e-03   p_cons 1.519355e-02   p_joint 1.161290e-03

Joint ci ratio: 2.258384e-01	ci left: 8.344457e-04	ci right 1.049757e-03	k: 300	n:320000
Cons ci ratio: 5.568503e-02	ci left: 1.482516e-02	ci right 1.567740e-02	k: 4879	n:320000
KS ci ratio: 1.358064e-01	ci left: 2.420478e-03	ci right 2.776125e-03	k: 830	n:320000
LSM11   320000 perm   88 sec   (3624 perm/sec)   p_kst 2.593750e-03   p_cons 1.524688e-02   p_joint 9.375000e-04

Joint ci ratio: 2.243545e-01	ci left: 8.205966e-04	ci right 1.030751e-03	k: 304	n:330000
Cons ci ratio: 5.480443e-02	ci left: 1.484809e-02	ci right 1.568773e-02	k: 5037	n:330000
KS ci ratio: 1.346791e-01	ci left: 2.388117e-03	ci right 2.735862e-03	k: 844	n:330000
LSM11   330000 perm   92 sec   (3578 perm/sec)   p_kst 2.557576e-03   p_cons 1.526364e-02   p_joint 9.212121e-04

Joint ci ratio: 2.228993e-01	ci left: 8.075665e-04	ci right 1.012858e-03	k: 308	n:340000
Cons ci ratio: 5.399599e-02	ci left: 1.485236e-02	ci right 1.567946e-02	k: 5189	n:340000
KS ci ratio: 1.331914e-01	ci left: 2.371886e-03	ci right 2.713151e-03	k: 863	n:340000
LSM11   340000 perm   96 sec   (3535 perm/sec)   p_kst 2.538235e-03   p_cons 1.526176e-02   p_joint 9.058824e-04

Joint ci ratio: 2.170073e-01	ci left: 8.303902e-04	ci right 1.035160e-03	k: 325	n:350000
Cons ci ratio: 5.322736e-02	ci left: 1.485365e-02	ci right 1.566869e-02	k: 5340	n:350000
KS ci ratio: 1.307901e-01	ci left: 2.392529e-03	ci right 2.730076e-03	k: 895	n:350000
LSM11   350000 perm   100 sec   (3492 perm/sec)   p_kst 2.557143e-03   p_cons 1.525714e-02   p_joint 9.285714e-04

Joint ci ratio: 1.655211e-01	ci left: 1.426795e-03	ci right 1.686889e-03	k: 559	n:360000
Cons ci ratio: 5.256847e-02	ci left: 1.481108e-02	ci right 1.561342e-02	k: 5475	n:360000
KS ci ratio: 1.286532e-01	ci left: 2.406700e-03	ci right 2.740276e-03	k: 925	n:360000
LSM11   360000 perm   104 sec   (3449 perm/sec)   p_kst 2.569444e-03   p_cons 1.520833e-02   p_joint 1.552778e-03

Joint ci ratio: 1.627819e-01	ci left: 1.437475e-03	ci right 1.694756e-03	k: 578	n:370000
Cons ci ratio: 5.192875e-02	ci left: 1.477354e-02	ci right 1.556381e-02	k: 5611	n:370000
KS ci ratio: 1.268174e-01	ci left: 2.412296e-03	ci right 2.741517e-03	k: 952	n:370000
LSM11   370000 perm   109 sec   (3408 perm/sec)   p_kst 2.572973e-03   p_cons 1.516486e-02   p_joint 1.562162e-03

Joint ci ratio: 1.611216e-01	ci left: 1.429946e-03	ci right 1.683016e-03	k: 590	n:380000
Cons ci ratio: 5.124397e-02	ci left: 1.477700e-02	ci right 1.555673e-02	k: 5762	n:380000
KS ci ratio: 1.250581e-01	ci left: 2.417629e-03	ci right 2.742661e-03	k: 979	n:380000
LSM11   380000 perm   113 sec   (3367 perm/sec)   p_kst 2.576316e-03   p_cons 1.516316e-02   p_joint 1.552632e-03

Joint ci ratio: 1.593788e-01	ci left: 1.425277e-03	ci right 1.674531e-03	k: 603	n:390000
Cons ci ratio: 5.050760e-02	ci left: 1.482594e-02	ci right 1.559668e-02	k: 5931	n:390000
KS ci ratio: 1.236782e-01	ci left: 2.410293e-03	ci right 2.730502e-03	k: 1001	n:390000
LSM11   390000 perm   117 sec   (3328 perm/sec)   p_kst 2.566667e-03   p_cons 1.520769e-02   p_joint 1.546154e-03

Joint ci ratio: 1.574359e-01	ci left: 1.425658e-03	ci right 1.671653e-03	k: 618	n:400000
Cons ci ratio: 4.991436e-02	ci left: 1.480583e-02	ci right 1.556622e-02	k: 6073	n:400000
KS ci ratio: 1.226435e-01	ci left: 2.391225e-03	ci right 2.706050e-03	k: 1018	n:400000
LSM11   400000 perm   122 sec   (3287 perm/sec)   p_kst 2.545000e-03   p_cons 1.518250e-02   p_joint 1.545000e-03

Joint ci ratio: 1.565549e-01	ci left: 1.407288e-03	ci right 1.648625e-03	k: 625	n:410000
Cons ci ratio: 4.928521e-02	ci left: 1.482048e-02	ci right 1.557176e-02	k: 6229	n:410000
KS ci ratio: 1.214582e-01	ci left: 2.380193e-03	ci right 2.690319e-03	k: 1038	n:410000
LSM11   410000 perm   126 sec   (3250 perm/sec)   p_kst 2.531707e-03   p_cons 1.519268e-02   p_joint 1.524390e-03

Joint ci ratio: 1.539922e-01	ci left: 1.421839e-03	ci right 1.661313e-03	k: 646	n:420000
Cons ci ratio: 4.876075e-02	ci left: 1.478509e-02	ci right 1.552638e-02	k: 6364	n:420000
KS ci ratio: 1.202497e-01	ci left: 2.372010e-03	ci right 2.677775e-03	k: 1059	n:420000
LSM11   420000 perm   131 sec   (3213 perm/sec)   p_kst 2.521429e-03   p_cons 1.515238e-02   p_joint 1.538095e-03

Joint ci ratio: 1.527004e-01	ci left: 1.413372e-03	ci right 1.649240e-03	k: 657	n:430000
Cons ci ratio: 4.803553e-02	ci left: 1.488468e-02	ci right 1.561955e-02	k: 6557	n:430000
KS ci ratio: 1.183109e-01	ci left: 2.395815e-03	ci right 2.699322e-03	k: 1094	n:430000
LSM11   430000 perm   135 sec   (3175 perm/sec)   p_kst 2.544186e-03   p_cons 1.524884e-02   p_joint 1.527907e-03

Joint ci ratio: 1.517817e-01	ci left: 1.398739e-03	ci right 1.630632e-03	k: 665	n:440000
Cons ci ratio: 4.748119e-02	ci left: 1.489221e-02	ci right 1.561874e-02	k: 6711	n:440000
KS ci ratio: 1.174572e-01	ci left: 2.376655e-03	ci right 2.675411e-03	k: 1110	n:440000
LSM11   440000 perm   140 sec   (3139 perm/sec)   p_kst 2.522727e-03   p_cons 1.525227e-02   p_joint 1.511364e-03

Joint ci ratio: 1.534076e-01	ci left: 1.337729e-03	ci right 1.562102e-03	k: 651	n:450000
Cons ci ratio: 4.696993e-02	ci left: 1.488408e-02	ci right 1.560218e-02	k: 6858	n:450000
KS ci ratio: 1.158004e-01	ci left: 2.392878e-03	ci right 2.689141e-03	k: 1142	n:450000
LSM11   450000 perm   145 sec   (3104 perm/sec)   p_kst 2.537778e-03   p_cons 1.524000e-02   p_joint 1.446667e-03

Joint ci ratio: 1.611435e-01	ci left: 1.181247e-03	ci right 1.390333e-03	k: 590	n:460000
Cons ci ratio: 4.648831e-02	ci left: 1.486775e-02	ci right 1.557751e-02	k: 7001	n:460000
KS ci ratio: 1.143583e-01	ci left: 2.402088e-03	ci right 2.695538e-03	k: 1171	n:460000
LSM11   460000 perm   150 sec   (3071 perm/sec)   p_kst 2.545652e-03   p_cons 1.521957e-02   p_joint 1.282609e-03

Joint ci ratio: 1.590049e-01	ci left: 1.188794e-03	ci right 1.396156e-03	k: 606	n:470000
Cons ci ratio: 4.600160e-02	ci left: 1.486477e-02	ci right 1.556676e-02	k: 7150	n:470000
KS ci ratio: 1.126869e-01	ci left: 2.423335e-03	ci right 2.714766e-03	k: 1206	n:470000
LSM11   470000 perm   155 sec   (3038 perm/sec)   p_kst 2.565957e-03   p_cons 1.521277e-02   p_joint 1.289362e-03

Joint ci ratio: 1.382179e-01	ci left: 1.557270e-03	ci right 1.790478e-03	k: 802	n:480000
Cons ci ratio: 4.546982e-02	ci left: 1.490109e-02	ci right 1.559645e-02	k: 7318	n:480000
KS ci ratio: 1.116287e-01	ci left: 2.419421e-03	ci right 2.707469e-03	k: 1229	n:480000
LSM11   480000 perm   160 sec   (3006 perm/sec)   p_kst 2.560417e-03   p_cons 1.524583e-02   p_joint 1.670833e-03

Joint ci ratio: 1.363618e-01	ci left: 1.568845e-03	ci right 1.800376e-03	k: 824	n:490000
Cons ci ratio: 4.500491e-02	ci left: 1.490368e-02	ci right 1.559186e-02	k: 7470	n:490000
KS ci ratio: 1.103352e-01	ci left: 2.427587e-03	ci right 2.713040e-03	k: 1258	n:490000
LSM11   490000 perm   165 sec   (2974 perm/sec)   p_kst 2.567347e-03   p_cons 1.524490e-02   p_joint 1.681633e-03

Joint ci ratio: 1.422727e-01	ci left: 1.408128e-03	ci right 1.625713e-03	k: 757	n:500000
Cons ci ratio: 4.450954e-02	ci left: 1.493587e-02	ci right 1.561776e-02	k: 7637	n:500000
KS ci ratio: 1.089162e-01	ci left: 2.443226e-03	ci right 2.726587e-03	k: 1291	n:500000
LSM11   500000 perm   170 sec   (2944 perm/sec)   p_kst 2.582000e-03   p_cons 1.527400e-02   p_joint 1.514000e-03

Joint ci ratio: 1.273318e-01	ci left: 1.736769e-03	ci right 1.974829e-03	k: 945	n:510000
Cons ci ratio: 4.406171e-02	ci left: 1.494551e-02	ci right 1.562080e-02	k: 7793	n:510000
KS ci ratio: 1.078776e-01	ci left: 2.443010e-03	ci right 2.723472e-03	k: 1316	n:510000
LSM11   510000 perm   175 sec   (2914 perm/sec)   p_kst 2.580392e-03   p_cons 1.528039e-02   p_joint 1.852941e-03

Joint ci ratio: 1.257460e-01	ci left: 1.748063e-03	ci right 1.984465e-03	k: 969	n:520000
Cons ci ratio: 4.364107e-02	ci left: 1.494530e-02	ci right 1.561396e-02	k: 7944	n:520000
KS ci ratio: 1.064712e-01	ci left: 2.461534e-03	ci right 2.740208e-03	k: 1351	n:520000
LSM11   520000 perm   180 sec   (2886 perm/sec)   p_kst 2.598077e-03   p_cons 1.527692e-02   p_joint 1.863462e-03

Joint ci ratio: 1.465006e-01	ci left: 1.250214e-03	ci right 1.449641e-03	k: 714	n:530000
Cons ci ratio: 4.330836e-02	ci left: 1.489286e-02	ci right 1.555397e-02	k: 8067	n:530000
KS ci ratio: 1.053470e-01	ci left: 2.468358e-03	ci right 2.744671e-03	k: 1380	n:530000
LSM11   530000 perm   185 sec   (2858 perm/sec)   p_kst 2.603774e-03   p_cons 1.522075e-02   p_joint 1.347170e-03

Joint ci ratio: 1.449875e-01	ci left: 1.253827e-03	ci right 1.451585e-03	k: 729	n:540000
Cons ci ratio: 4.287696e-02	ci left: 1.491566e-02	ci right 1.557103e-02	k: 8230	n:540000
KS ci ratio: 1.042578e-01	ci left: 2.474944e-03	ci right 2.748954e-03	k: 1409	n:540000
LSM11   540000 perm   191 sec   (2829 perm/sec)   p_kst 2.609259e-03   p_cons 1.524074e-02   p_joint 1.350000e-03

Joint ci ratio: 1.441025e-01	ci left: 1.246801e-03	ci right 1.442148e-03	k: 738	n:550000
Cons ci ratio: 4.249420e-02	ci left: 1.491249e-02	ci right 1.556172e-02	k: 8379	n:550000
KS ci ratio: 1.036357e-01	ci left: 2.460050e-03	ci right 2.730687e-03	k: 1426	n:550000
LSM11   550000 perm   196 sec   (2801 perm/sec)   p_kst 2.592727e-03   p_cons 1.523455e-02   p_joint 1.341818e-03

Joint ci ratio: 1.233571e-01	ci left: 1.688942e-03	ci right 1.912691e-03	k: 1007	n:560000
Cons ci ratio: 4.207895e-02	ci left: 1.493949e-02	ci right 1.558339e-02	k: 8545	n:560000
KS ci ratio: 1.030605e-01	ci left: 2.443952e-03	ci right 2.711235e-03	k: 1442	n:560000
LSM11   560000 perm   202 sec   (2774 perm/sec)   p_kst 2.575000e-03   p_cons 1.525893e-02   p_joint 1.798214e-03

Joint ci ratio: 1.302016e-01	ci left: 1.484326e-03	ci right 1.692722e-03	k: 904	n:570000
Cons ci ratio: 4.172917e-02	ci left: 1.492738e-02	ci right 1.556528e-02	k: 8689	n:570000
KS ci ratio: 1.024244e-01	ci left: 2.431843e-03	ci right 2.696061e-03	k: 1460	n:570000
LSM11   570000 perm   208 sec   (2746 perm/sec)   p_kst 2.561404e-03   p_cons 1.524386e-02   p_joint 1.585965e-03

Joint ci ratio: 1.296308e-01	ci left: 1.472078e-03	ci right 1.677780e-03	k: 912	n:580000
Cons ci ratio: 4.141178e-02	ci left: 1.489864e-02	ci right 1.553036e-02	k: 8823	n:580000
KS ci ratio: 1.012522e-01	ci left: 2.447043e-03	ci right 2.709689e-03	k: 1494	n:580000
LSM11   580000 perm   213 sec   (2720 perm/sec)   p_kst 2.575862e-03   p_cons 1.521207e-02   p_joint 1.572414e-03

Joint ci ratio: 1.284404e-01	ci left: 1.475011e-03	ci right 1.679086e-03	k: 929	n:590000
Cons ci ratio: 4.105966e-02	ci left: 1.490109e-02	ci right 1.552741e-02	k: 8975	n:590000
KS ci ratio: 1.002510e-01	ci left: 2.455134e-03	ci right 2.715890e-03	k: 1524	n:590000
LSM11   590000 perm   219 sec   (2694 perm/sec)   p_kst 2.583051e-03   p_cons 1.521186e-02   p_joint 1.574576e-03

Joint ci ratio: 1.197870e-01	ci left: 1.674920e-03	ci right 1.889936e-03	k: 1068	n:600000
Cons ci ratio: 4.072089e-02	ci left: 1.490018e-02	ci right 1.552118e-02	k: 9125	n:600000
KS ci ratio: 9.943933e-02	ci left: 2.454841e-03	ci right 2.713332e-03	k: 1549	n:600000
LSM11   600000 perm   225 sec   (2669 perm/sec)   p_kst 2.581667e-03   p_cons 1.520833e-02   p_joint 1.780000e-03

Joint ci ratio: 1.186272e-01	ci left: 1.680863e-03	ci right 1.894405e-03	k: 1089	n:610000
Cons ci ratio: 4.035946e-02	ci left: 1.492205e-02	ci right 1.553831e-02	k: 9289	n:610000
KS ci ratio: 9.849042e-02	ci left: 2.462562e-03	ci right 2.719248e-03	k: 1579	n:610000
LSM11   610000 perm   231 sec   (2644 perm/sec)   p_kst 2.588525e-03   p_cons 1.522787e-02   p_joint 1.785246e-03

Joint ci ratio: 1.176596e-01	ci left: 1.681926e-03	ci right 1.893740e-03	k: 1107	n:620000
Cons ci ratio: 4.005700e-02	ci left: 1.490650e-02	ci right 1.551740e-02	k: 9430	n:620000
KS ci ratio: 9.781212e-02	ci left: 2.457455e-03	ci right 2.711744e-03	k: 1601	n:620000
LSM11   620000 perm   237 sec   (2620 perm/sec)   p_kst 2.582258e-03   p_cons 1.520968e-02   p_joint 1.785484e-03

Joint ci ratio: 1.168714e-01	ci left: 1.678340e-03	ci right 1.888189e-03	k: 1122	n:630000
Cons ci ratio: 3.971281e-02	ci left: 1.492761e-02	ci right 1.553400e-02	k: 9594	n:630000
KS ci ratio: 9.705780e-02	ci left: 2.457164e-03	ci right 2.709350e-03	k: 1626	n:630000
LSM11   630000 perm   243 sec   (2596 perm/sec)   p_kst 2.580952e-03   p_cons 1.522857e-02   p_joint 1.780952e-03

Joint ci ratio: 1.161500e-01	ci left: 1.673353e-03	ci right 1.881198e-03	k: 1136	n:640000
Cons ci ratio: 3.939990e-02	ci left: 1.493107e-02	ci right 1.553271e-02	k: 9747	n:640000
KS ci ratio: 9.658480e-02	ci left: 2.443164e-03	ci right 2.692622e-03	k: 1642	n:640000
LSM11   640000 perm   249 sec   (2573 perm/sec)   p_kst 2.565625e-03   p_cons 1.522969e-02   p_joint 1.775000e-03

Joint ci ratio: 1.148931e-01	ci left: 1.684960e-03	ci right 1.891828e-03	k: 1161	n:650000
Cons ci ratio: 3.909026e-02	ci left: 1.493748e-02	ci right 1.553454e-02	k: 9902	n:650000
KS ci ratio: 9.568592e-02	ci left: 2.452123e-03	ci right 2.700035e-03	k: 1673	n:650000
LSM11   650000 perm   255 sec   (2550 perm/sec)   p_kst 2.573846e-03   p_cons 1.523385e-02   p_joint 1.786154e-03

Joint ci ratio: 1.236199e-01	ci left: 1.427156e-03	ci right 1.616656e-03	k: 1003	n:660000
Cons ci ratio: 3.876238e-02	ci left: 1.496323e-02	ci right 1.555619e-02	k: 10070	n:660000
KS ci ratio: 9.517616e-02	ci left: 2.441591e-03	ci right 2.687050e-03	k: 1691	n:660000
LSM11   660000 perm   261 sec   (2528 perm/sec)   p_kst 2.562121e-03   p_cons 1.525758e-02   p_joint 1.519697e-03

Joint ci ratio: 1.225862e-01	ci left: 1.430447e-03	ci right 1.618681e-03	k: 1020	n:670000
Cons ci ratio: 3.852485e-02	ci left: 1.492465e-02	ci right 1.551238e-02	k: 10195	n:670000
KS ci ratio: 9.453598e-02	ci left: 2.438663e-03	ci right 2.682087e-03	k: 1714	n:670000
LSM11   670000 perm   267 sec   (2506 perm/sec)   p_kst 2.558209e-03   p_cons 1.521642e-02   p_joint 1.522388e-03

Joint ci ratio: 1.218134e-01	ci left: 1.427944e-03	ci right 1.614579e-03	k: 1033	n:680000
Cons ci ratio: 3.826152e-02	ci left: 1.491053e-02	ci right 1.549361e-02	k: 10336	n:680000
KS ci ratio: 9.407149e-02	ci left: 2.427210e-03	ci right 2.668235e-03	k: 1731	n:680000
LSM11   680000 perm   274 sec   (2485 perm/sec)   p_kst 2.545588e-03   p_cons 1.520000e-02   p_joint 1.519118e-03

Joint ci ratio: 1.208240e-01	ci left: 1.431140e-03	ci right 1.616564e-03	k: 1050	n:690000
Cons ci ratio: 3.795206e-02	ci left: 1.493704e-02	ci right 1.551632e-02	k: 10505	n:690000
KS ci ratio: 9.321389e-02	ci left: 2.437325e-03	ci right 2.677027e-03	k: 1763	n:690000
LSM11   690000 perm   280 sec   (2464 perm/sec)   p_kst 2.555072e-03   p_cons 1.522464e-02   p_joint 1.521739e-03

Joint ci ratio: 1.196902e-01	ci left: 1.438407e-03	ci right 1.622900e-03	k: 1070	n:700000
Cons ci ratio: 3.767508e-02	ci left: 1.494299e-02	ci right 1.551818e-02	k: 10660	n:700000
KS ci ratio: 9.235354e-02	ci left: 2.448555e-03	ci right 2.687020e-03	k: 1796	n:700000
LSM11   700000 perm   287 sec   (2443 perm/sec)   p_kst 2.565714e-03   p_cons 1.522857e-02   p_joint 1.528571e-03

Joint ci ratio: 1.194126e-01	ci left: 1.424979e-03	ci right 1.607296e-03	k: 1075	n:710000
Cons ci ratio: 3.742517e-02	ci left: 1.493204e-02	ci right 1.550291e-02	k: 10803	n:710000
KS ci ratio: 9.156676e-02	ci left: 2.456727e-03	ci right 2.693839e-03	k: 1827	n:710000
LSM11   710000 perm   293 sec   (2422 perm/sec)   p_kst 2.573239e-03   p_cons 1.521549e-02   p_joint 1.514085e-03

Joint ci ratio: 1.084559e-01	ci left: 1.712864e-03	ci right 1.910624e-03	k: 1303	n:720000
Cons ci ratio: 3.717844e-02	ci left: 1.492278e-02	ci right 1.548946e-02	k: 10947	n:720000
KS ci ratio: 9.084877e-02	ci left: 2.461965e-03	ci right 2.697621e-03	k: 1856	n:720000
LSM11   720000 perm   300 sec   (2402 perm/sec)   p_kst 2.577778e-03   p_cons 1.520417e-02   p_joint 1.809722e-03

Joint ci ratio: 1.081255e-01	ci left: 1.700061e-03	ci right 1.895707e-03	k: 1311	n:730000
Cons ci ratio: 3.693146e-02	ci left: 1.491786e-02	ci right 1.548051e-02	k: 11094	n:730000
KS ci ratio: 9.007560e-02	ci left: 2.471084e-03	ci right 2.705494e-03	k: 1888	n:730000
LSM11   730000 perm   307 sec   (2380 perm/sec)   p_kst 2.586301e-03   p_cons 1.519726e-02   p_joint 1.795890e-03

Joint ci ratio: 1.072299e-01	ci left: 1.706017e-03	ci right 1.900619e-03	k: 1333	n:740000
Cons ci ratio: 3.666781e-02	ci left: 1.493050e-02	ci right 1.548952e-02	k: 11254	n:740000
KS ci ratio: 8.939185e-02	ci left: 2.476001e-03	ci right 2.709001e-03	k: 1917	n:740000
LSM11   740000 perm   313 sec   (2361 perm/sec)   p_kst 2.590541e-03   p_cons 1.520811e-02   p_joint 1.801351e-03

Joint ci ratio: 1.064349e-01	ci left: 1.709224e-03	ci right 1.902656e-03	k: 1353	n:750000
Cons ci ratio: 3.641459e-02	ci left: 1.493885e-02	ci right 1.549424e-02	k: 11411	n:750000
KS ci ratio: 8.865498e-02	ci left: 2.484705e-03	ci right 2.716497e-03	k: 1949	n:750000
LSM11   750000 perm   320 sec   (2341 perm/sec)   p_kst 2.598667e-03   p_cons 1.521467e-02   p_joint 1.804000e-03

Joint ci ratio: 1.059280e-01	ci left: 1.703385e-03	ci right 1.895181e-03	k: 1366	n:760000
Cons ci ratio: 3.618719e-02	ci left: 1.493004e-02	ci right 1.548156e-02	k: 11555	n:760000
KS ci ratio: 8.815930e-02	ci left: 2.480319e-03	ci right 2.710341e-03	k: 1971	n:760000
LSM11   760000 perm   327 sec   (2322 perm/sec)   p_kst 2.593421e-03   p_cons 1.520395e-02   p_joint 1.797368e-03

Joint ci ratio: 1.051234e-01	ci left: 1.707816e-03	ci right 1.898560e-03	k: 1387	n:770000
Cons ci ratio: 3.596088e-02	ci left: 1.492404e-02	ci right 1.547182e-02	k: 11701	n:770000
KS ci ratio: 8.747415e-02	ci left: 2.487483e-03	ci right 2.716285e-03	k: 2002	n:770000
LSM11   770000 perm   334 sec   (2304 perm/sec)   p_kst 2.600000e-03   p_cons 1.519610e-02   p_joint 1.801299e-03

Joint ci ratio: 1.080905e-01	ci left: 1.592326e-03	ci right 1.775510e-03	k: 1312	n:780000
Cons ci ratio: 3.575256e-02	ci left: 1.490677e-02	ci right 1.545069e-02	k: 11838	n:780000
KS ci ratio: 8.704101e-02	ci left: 2.480673e-03	ci right 2.707662e-03	k: 2022	n:780000
LSM11   780000 perm   341 sec   (2286 perm/sec)   p_kst 2.592308e-03   p_cons 1.517692e-02   p_joint 1.682051e-03

Joint ci ratio: 1.075190e-01	ci left: 1.589413e-03	ci right 1.771234e-03	k: 1326	n:790000
Cons ci ratio: 3.553576e-02	ci left: 1.489998e-02	ci right 1.544029e-02	k: 11983	n:790000
KS ci ratio: 8.657177e-02	ci left: 2.476515e-03	ci right 2.701840e-03	k: 2044	n:790000
LSM11   790000 perm   348 sec   (2268 perm/sec)   p_kst 2.587342e-03   p_cons 1.516835e-02   p_joint 1.678481e-03

Joint ci ratio: 1.106547e-01	ci left: 1.479564e-03	ci right 1.654077e-03	k: 1252	n:800000
Cons ci ratio: 3.533322e-02	ci left: 1.488470e-02	ci right 1.542132e-02	k: 12121	n:800000
KS ci ratio: 8.594345e-02	ci left: 2.482250e-03	ci right 2.706376e-03	k: 2074	n:800000
LSM11   800000 perm   356 sec   (2249 perm/sec)   p_kst 2.592500e-03   p_cons 1.515125e-02   p_joint 1.565000e-03

Joint ci ratio: 1.102599e-01	ci left: 1.472102e-03	ci right 1.645075e-03	k: 1261	n:810000
Cons ci ratio: 3.513991e-02	ci left: 1.486491e-02	ci right 1.539782e-02	k: 12255	n:810000
KS ci ratio: 8.547122e-02	ci left: 2.479392e-03	ci right 2.701967e-03	k: 2097	n:810000
LSM11   810000 perm   363 sec   (2231 perm/sec)   p_kst 2.588889e-03   p_cons 1.512963e-02   p_joint 1.556790e-03

Joint ci ratio: 1.170000e-01	ci left: 1.287073e-03	ci right 1.448189e-03	k: 1120	n:820000
Cons ci ratio: 3.491115e-02	ci left: 1.487826e-02	ci right 1.540810e-02	k: 12416	n:820000
KS ci ratio: 8.504689e-02	ci left: 2.474218e-03	ci right 2.695172e-03	k: 2118	n:820000
LSM11   820000 perm   371 sec   (2213 perm/sec)   p_kst 2.582927e-03   p_cons 1.514146e-02   p_joint 1.365854e-03

Joint ci ratio: 1.161226e-01	ci left: 1.291452e-03	ci right 1.451820e-03	k: 1137	n:830000
Cons ci ratio: 3.467560e-02	ci left: 1.490085e-02	ci right 1.542784e-02	k: 12585	n:830000
KS ci ratio: 8.452988e-02	ci left: 2.475070e-03	ci right 2.694690e-03	k: 2144	n:830000
LSM11   830000 perm   378 sec   (2196 perm/sec)   p_kst 2.583133e-03   p_cons 1.516265e-02   p_joint 1.369880e-03

Joint ci ratio: 1.153647e-01	ci left: 1.293417e-03	ci right 1.452910e-03	k: 1152	n:840000
Cons ci ratio: 3.446259e-02	ci left: 1.490757e-02	ci right 1.543150e-02	k: 12741	n:840000
KS ci ratio: 8.409989e-02	ci left: 2.471243e-03	ci right 2.689353e-03	k: 2166	n:840000
LSM11   840000 perm   385 sec   (2180 perm/sec)   p_kst 2.578571e-03   p_cons 1.516786e-02   p_joint 1.371429e-03

Joint ci ratio: 1.148185e-01	ci left: 1.290769e-03	ci right 1.449131e-03	k: 1163	n:850000
Cons ci ratio: 3.421979e-02	ci left: 1.494330e-02	ci right 1.546472e-02	k: 12922	n:850000
KS ci ratio: 8.371475e-02	ci left: 2.465205e-03	ci right 2.681737e-03	k: 2186	n:850000
LSM11   850000 perm   393 sec   (2163 perm/sec)   p_kst 2.571765e-03   p_cons 1.520235e-02   p_joint 1.368235e-03

Joint ci ratio: 1.140372e-01	ci left: 1.293833e-03	ci right 1.451417e-03	k: 1179	n:860000
Cons ci ratio: 3.403220e-02	ci left: 1.493440e-02	ci right 1.545259e-02	k: 13065	n:860000
KS ci ratio: 8.316502e-02	ci left: 2.469557e-03	ci right 2.684978e-03	k: 2215	n:860000
LSM11   860000 perm   401 sec   (2147 perm/sec)   p_kst 2.575581e-03   p_cons 1.519186e-02   p_joint 1.370930e-03

Joint ci ratio: 1.158717e-01	ci left: 1.237653e-03	ci right 1.390986e-03	k: 1142	n:870000
Cons ci ratio: 3.243069e-02	ci left: 1.624818e-02	ci right 1.678493e-02	k: 14368	n:870000
KS ci ratio: 8.271838e-02	ci left: 2.468185e-03	ci right 2.682275e-03	k: 2239	n:870000
LSM11   870000 perm   408 sec   (2131 perm/sec)   p_kst 2.573563e-03   p_cons 1.651494e-02   p_joint 1.312644e-03

Joint ci ratio: 1.151684e-01	ci left: 1.239038e-03	ci right 1.391548e-03	k: 1156	n:880000
Cons ci ratio: 3.221792e-02	ci left: 1.627771e-02	ci right 1.681185e-02	k: 14558	n:880000
KS ci ratio: 8.218791e-02	ci left: 2.472413e-03	ci right 2.685428e-03	k: 2268	n:880000
LSM11   880000 perm   416 sec   (2116 perm/sec)   p_kst 2.577273e-03   p_cons 1.654318e-02   p_joint 1.313636e-03

Joint ci ratio: 1.142826e-01	ci left: 1.244761e-03	ci right 1.396717e-03	k: 1174	n:890000
Cons ci ratio: 3.202142e-02	ci left: 1.629432e-02	ci right 1.682568e-02	k: 14737	n:890000
KS ci ratio: 8.173888e-02	ci left: 2.472147e-03	ci right 2.683920e-03	k: 2293	n:890000
LSM11   890000 perm   424 sec   (2100 perm/sec)   p_kst 2.576404e-03   p_cons 1.655843e-02   p_joint 1.319101e-03

Joint ci ratio: 1.168507e-01	ci left: 1.175899e-03	ci right 1.322897e-03	k: 1123	n:900000
Cons ci ratio: 3.182631e-02	ci left: 1.631278e-02	ci right 1.684145e-02	k: 14918	n:900000
KS ci ratio: 8.127956e-02	ci left: 2.472979e-03	ci right 2.683576e-03	k: 2319	n:900000
LSM11   900000 perm   432 sec   (2084 perm/sec)   p_kst 2.576667e-03   p_cons 1.657556e-02   p_joint 1.247778e-03

Joint ci ratio: 1.116057e-01	ci left: 1.278273e-03	ci right 1.430424e-03	k: 1231	n:910000
Cons ci ratio: 3.165390e-02	ci left: 1.631122e-02	ci right 1.683692e-02	k: 15081	n:910000
KS ci ratio: 8.089707e-02	ci left: 2.469489e-03	ci right 2.678752e-03	k: 2341	n:910000
LSM11   910000 perm   440 sec   (2070 perm/sec)   p_kst 2.572527e-03   p_cons 1.657253e-02   p_joint 1.352747e-03

Joint ci ratio: 1.026505e-01	ci left: 1.501353e-03	ci right 1.664855e-03	k: 1455	n:920000
Cons ci ratio: 3.149268e-02	ci left: 1.630107e-02	ci right 1.682372e-02	k: 15236	n:920000
KS ci ratio: 8.058832e-02	ci left: 2.461816e-03	ci right 2.669596e-03	k: 2359	n:920000
LSM11   920000 perm   448 sec   (2055 perm/sec)   p_kst 2.564130e-03   p_cons 1.656087e-02   p_joint 1.581522e-03

Joint ci ratio: 1.035819e-01	ci left: 1.457971e-03	ci right 1.618277e-03	k: 1429	n:930000
Cons ci ratio: 3.132975e-02	ci left: 1.629542e-02	ci right 1.681513e-02	k: 15395	n:930000
KS ci ratio: 8.014802e-02	ci left: 2.462740e-03	ci right 2.669410e-03	k: 2385	n:930000
LSM11   930000 perm   456 sec   (2041 perm/sec)   p_kst 2.564516e-03   p_cons 1.655376e-02   p_joint 1.536559e-03

Joint ci ratio: 1.031143e-01	ci left: 1.455933e-03	ci right 1.615249e-03	k: 1442	n:940000
Cons ci ratio: 3.114897e-02	ci left: 1.631100e-02	ci right 1.682816e-02	k: 15574	n:940000
KS ci ratio: 7.976461e-02	ci left: 2.460520e-03	ci right 2.665969e-03	k: 2408	n:940000
LSM11   940000 perm   464 sec   (2027 perm/sec)   p_kst 2.561702e-03   p_cons 1.656809e-02   p_joint 1.534043e-03

Joint ci ratio: 1.024069e-01	ci left: 1.461120e-03	ci right 1.619839e-03	k: 1462	n:950000
Cons ci ratio: 3.100633e-02	ci left: 1.628970e-02	ci right 1.680378e-02	k: 15718	n:950000
KS ci ratio: 7.932127e-02	ci left: 2.462475e-03	ci right 2.666892e-03	k: 2435	n:950000
LSM11   950000 perm   472 sec   (2013 perm/sec)   p_kst 2.563158e-03   p_cons 1.654526e-02   p_joint 1.538947e-03

Joint ci ratio: 9.779588e-02	ci left: 1.589104e-03	ci right 1.753509e-03	k: 1603	n:960000
Cons ci ratio: 3.084487e-02	ci left: 1.629057e-02	ci right 1.680194e-02	k: 15883	n:960000
KS ci ratio: 7.874115e-02	ci left: 2.473584e-03	ci right 2.677352e-03	k: 2471	n:960000
LSM11   960000 perm   480 sec   (2000 perm/sec)   p_kst 2.573958e-03   p_cons 1.654479e-02   p_joint 1.669792e-03

Outputting figure to mutsig2_images.part000000000099/LSM11.3_1099_960000_0.002574_0.016545_0.0016698.png
                gene_name: LSM11
               theta_stop: 0.098 
                    nperm: 960000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0018 

Current progress: 73 percent done.
LRRC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
Cons ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
LRRC23   10000 perm   1 sec   (7537 perm/sec)   p_kst 4.660000e-02   p_cons 2.296000e-01   p_joint 3.070000e-02

Joint ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
Cons ci ratio: 5.057361e-02	ci left: 2.251237e-01	ci right 2.368546e-01	k: 4619	n:20000
KS ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
LRRC23   20000 perm   3 sec   (6546 perm/sec)   p_kst 4.595000e-02   p_cons 2.309500e-01   p_joint 3.015000e-02

Joint ci ratio: 1.095946e-01	ci left: 3.865423e-02	ci right 4.316856e-02	k: 1226	n:30000
Cons ci ratio: 4.135540e-02	ci left: 2.256777e-01	ci right 2.352412e-01	k: 6913	n:30000
KS ci ratio: 1.033407e-01	ci left: 4.339680e-02	ci right 4.815833e-02	k: 1372	n:30000
LRRC23   30000 perm   5 sec   (6267 perm/sec)   p_kst 4.573333e-02   p_cons 2.304333e-01   p_joint 4.086667e-02

Joint ci ratio: 6.239008e-02	ci left: 8.701563e-02	ci right 9.264408e-02	k: 3592	n:40000
Cons ci ratio: 3.584436e-02	ci left: 2.260322e-01	ci right 2.343070e-01	k: 9206	n:40000
KS ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
LRRC23   40000 perm   7 sec   (6065 perm/sec)   p_kst 4.610000e-02   p_cons 2.301500e-01   p_joint 8.980000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC23.2_1241_40000_0.0461_0.23015_0.0898.png
                gene_name: LRRC23
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 75 percent done.
LRRC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
LRRC25   10000 perm   1 sec   (8165 perm/sec)   p_kst 2.420000e-02   p_cons 1.277000e-01   p_joint 8.710000e-02

Joint ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
Cons ci ratio: 7.321807e-02	ci left: 1.207415e-01	ci right 1.299677e-01	k: 2506	n:20000
KS ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
LRRC25   20000 perm   3 sec   (7100 perm/sec)   p_kst 2.360000e-02   p_cons 1.253000e-01   p_joint 5.570000e-02

Joint ci ratio: 7.389054e-02	ci left: 8.258879e-02	ci right 8.895836e-02	k: 2572	n:30000
Cons ci ratio: 5.933700e-02	ci left: 1.232188e-01	ci right 1.307869e-01	k: 3809	n:30000
KS ci ratio: 1.483862e-01	ci left: 2.104423e-02	ci right 2.444906e-02	k: 681	n:30000
LRRC25   30000 perm   4 sec   (6722 perm/sec)   p_kst 2.270000e-02   p_cons 1.269667e-01   p_joint 8.573333e-02

Joint ci ratio: 6.577599e-02	ci left: 7.886133e-02	ci right 8.424960e-02	k: 3261	n:40000
Cons ci ratio: 5.152702e-02	ci left: 1.231335e-01	ci right 1.296708e-01	k: 5055	n:40000
KS ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
LRRC25   40000 perm   6 sec   (6456 perm/sec)   p_kst 2.322500e-02   p_cons 1.263750e-01   p_joint 8.152500e-02

Joint ci ratio: 5.685463e-02	ci left: 8.434626e-02	ci right 8.930183e-02	k: 4340	n:50000
Cons ci ratio: 4.604139e-02	ci left: 1.236971e-01	ci right 1.295463e-01	k: 6330	n:50000
KS ci ratio: 1.139020e-01	ci left: 2.182046e-02	ci right 2.447530e-02	k: 1156	n:50000
LRRC25   50000 perm   8 sec   (6265 perm/sec)   p_kst 2.312000e-02   p_cons 1.266000e-01   p_joint 8.680000e-02

Joint ci ratio: 5.006107e-02	ci left: 9.039087e-02	ci right 9.504861e-02	k: 5562	n:60000
Cons ci ratio: 4.191060e-02	ci left: 1.245767e-01	ci right 1.299261e-01	k: 7634	n:60000
KS ci ratio: 1.041471e-01	ci left: 2.186405e-02	ci right 2.428238e-02	k: 1383	n:60000
LRRC25   60000 perm   10 sec   (6088 perm/sec)   p_kst 2.305000e-02   p_cons 1.272333e-01   p_joint 9.270000e-02

Joint ci ratio: 4.643109e-02	ci left: 9.026451e-02	ci right 9.456934e-02	k: 6468	n:70000
Cons ci ratio: 3.885296e-02	ci left: 1.244850e-01	ci right 1.294316e-01	k: 8886	n:70000
KS ci ratio: 9.737228e-02	ci left: 2.152562e-02	ci right 2.374277e-02	k: 1583	n:70000
LRRC25   70000 perm   12 sec   (5939 perm/sec)   p_kst 2.261429e-02   p_cons 1.269429e-01   p_joint 9.240000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC25.2_926_70000_0.022614_0.12694_0.0924.png
                gene_name: LRRC25
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 77 percent done.
LRRC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
Cons ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
KS ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
LRRC30   10000 perm   1 sec   (8235 perm/sec)   p_kst 7.535000e-01   p_cons 3.586000e-01   p_joint 9.651000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC30.2_909_10000_0.7535_0.3586_0.9651.png
                gene_name: LRRC30
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 79 percent done.
LRRC31
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
LRRC39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
LRRC39   10000 perm   1 sec   (8054 perm/sec)   p_kst 1.828000e-01   p_cons 9.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC39.2_1040_10000_0.1828_0.9495_1.png
                gene_name: LRRC39
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
LRRC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
Cons ci ratio: 1.989420e-02	ci left: 7.871550e-01	ci right 8.030727e-01	k: 7952	n:10000
KS ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
LRRC41   10000 perm   1 sec   (6868 perm/sec)   p_kst 3.053000e-01   p_cons 7.952000e-01   p_joint 5.565000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC41.2_2479_10000_0.3053_0.7952_0.5565.png
                gene_name: LRRC41
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
LRRC42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
LRRC42   10000 perm   1 sec   (7570 perm/sec)   p_kst 3.509000e-01   p_cons 2.671000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC42.2_1315_10000_0.3509_0.2671_0.4281.png
                gene_name: LRRC42
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 86 percent done.
LRRC43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
LRRC43   10000 perm   1 sec   (7214 perm/sec)   p_kst 8.300000e-01   p_cons 5.745000e-01   p_joint 9.426000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC43.2_2019_10000_0.83_0.5745_0.9426.png
                gene_name: LRRC43
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 88 percent done.
LRRC47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
Cons ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
KS ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
LRRC47   10000 perm   1 sec   (7391 perm/sec)   p_kst 2.552000e-01   p_cons 7.954000e-01   p_joint 7.334000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC47.2_1780_10000_0.2552_0.7954_0.7334.png
                gene_name: LRRC47
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 89 percent done.
LRRC55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
Cons ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
KS ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
LRRC55   10000 perm   1 sec   (8181 perm/sec)   p_kst 1.845000e-01   p_cons 1.397000e-01   p_joint 2.026000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC55.2_1034_10000_0.1845_0.1397_0.2026.png
                gene_name: LRRC55
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 91 percent done.
LRRC56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
KS ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
LRRC56   10000 perm   1 sec   (7414 perm/sec)   p_kst 8.059000e-01   p_cons 6.107000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC56.2_1673_10000_0.8059_0.6107_1.png
                gene_name: LRRC56
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
LRRC58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
Cons ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
KS ci ratio: 2.385131e-02	ci left: 7.209804e-01	ci right 7.384856e-01	k: 7298	n:10000
LRRC58   10000 perm   1 sec   (7721 perm/sec)   p_kst 7.298000e-01   p_cons 1.010000e-01   p_joint 2.102000e-01

Joint ci ratio: 5.356764e-02	ci left: 2.055111e-01	ci right 2.168730e-01	k: 4223	n:20000
Cons ci ratio: 8.313105e-02	ci left: 9.587565e-02	ci right 1.042410e-01	k: 2000	n:20000
KS ci ratio: 1.705179e-02	ci left: 7.192074e-01	ci right 7.316270e-01	k: 14509	n:20000
LRRC58   20000 perm   3 sec   (6697 perm/sec)   p_kst 7.254500e-01   p_cons 1.000000e-01   p_joint 2.111500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC58.2_1132_20000_0.72545_0.1_0.21115.png
                gene_name: LRRC58
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 95 percent done.
LRRC8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.147021e-02	ci left: 4.619752e-01	ci right 4.816412e-01	k: 4718	n:10000
Cons ci ratio: 2.254126e-02	ci left: 7.429077e-01	ci right 7.599456e-01	k: 7515	n:10000
KS ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
LRRC8A   10000 perm   1 sec   (6961 perm/sec)   p_kst 4.023000e-01   p_cons 7.515000e-01   p_joint 4.718000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8A.2_2441_10000_0.4023_0.7515_0.4718.png
                gene_name: LRRC8A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 96 percent done.
LRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
LRWD1   10000 perm   1 sec   (7245 perm/sec)   p_kst 3.659000e-01   p_cons 7.012000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRWD1.2_2004_10000_0.3659_0.7012_1.png
                gene_name: LRWD1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
LSM14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
Cons ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
KS ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
LSM14B   10000 perm   1 sec   (7687 perm/sec)   p_kst 8.051000e-01   p_cons 5.193000e-01   p_joint 9.275000e-01

Outputting figure to mutsig2_images.part000000000099/LSM14B.2_1190_10000_0.8051_0.5193_0.9275.png
                gene_name: LSM14B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000099
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 99 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 4422150: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000100> was used as the working directory.
Started at Wed Oct 24 17:58:45 2012
Results reported at Wed Oct 24 18:07:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000100.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000100.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 100  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000100.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    592.82 sec.
    Max Memory :      5161 MB
    Max Swap   :      7736 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
100
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 100
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 100: processing genes 8958 - 9047
Calculating significance of each gene.
Using projection method.
8958	LSS	9.891337e-01
8959	LST-3TM12	4.204142e-01
8960	LST1	1
8961	LTA	2.547224e-01
8962	LTA4H	9.686413e-01
8963	LTB	6.795861e-01
8964	LTB4R	3.367586e-01
8965	LTB4R2	1
8966	LTBP1	7.607099e-01
8967	LTBP2	3.242129e-01
8968	LTBP3	9.844319e-01
8969	LTBP4	9.688907e-01
8970	LTBR	1
8971	LTC4S	1
8972	LTF	2.567639e-01
8973	LTK	8.092992e-01
8974	LTV1	7.534631e-01
8975	LUC7L	7.535605e-02
8976	LUC7L2	8.148209e-01
8977	LUC7L3	8.207290e-01
8978	LUM	5.817405e-03
8979	LUZP1	8.257428e-01
8980	LUZP2	1.701806e-01
8981	LUZP4	1.050732e-01
8982	LXN	1
8983	LY6D	1
8984	LY6E	6.615731e-01
8985	LY6G5B	1
8986	LY6G5C	6.475171e-01
8987	LY6G6C	1
8988	LY6G6D	1
8989	LY6G6F	5.846759e-01
8990	LY6H	1
8991	LY6K	5.280468e-01
8992	LY75	9.715519e-01
8993	LY86	8.857773e-03
8994	LY9	2.779933e-01
8995	LY96	3.213104e-01
8996	LYAR	1.204666e-01
8997	LYG1	1
8998	LYG2	1
8999	LYN	2.711046e-01
9000/18094 9000	LYNX1	1
9001	LYPD1	5.213838e-01
9002	LYPD2	3.884139e-01
9003	LYPD3	1
9004	LYPD4	1
9005	LYPD5	5.212808e-01
9006	LYPD6	2.626125e-01
9007	LYPD6B	1
9008	LYPLA1	3.893905e-01
9009	LYPLA2	8.444476e-01
9010	LYPLAL1	1.564903e-01
9011	LYRM1	1
9012	LYRM2	3.414920e-01
9013	LYRM4	1
9014	LYRM5	2.223721e-01
9015	LYRM7	1
9016	LYSMD1	1
9017	LYSMD2	4.437446e-01
9018	LYSMD3	1
9019	LYSMD4	6.237724e-01
9020	LYST	1
9021	LYVE1	1
9022	LYZ	6.104944e-01
9023	LYZL1	1.849588e-02
9024	LYZL2	7.727770e-03
9025	LYZL4	5.256848e-01
9026	LYZL6	4.851608e-01
9027	LZIC	1
9028	LZTFL1	1
9029	LZTR1	8.954546e-01
9030	LZTS1	1
9031	LZTS2	1
9032	M6PR	1
9033	MAB21L1	2.350091e-01
9034	MAB21L2	1
9035	MACC1	9.612222e-01
9036	MACF1	1.000000e+00
9037	MACROD1	4.363268e-01
9038	MACROD2	8.301342e-01
9039	MAD1L1	7.857182e-01
9040	MAD2L1	1.545319e-01
9041	MAD2L1BP	3.744587e-01
9042	MAD2L2	1
9043	MADCAM1	3.520970e-01
9044	MADD	6.395363e-01
9045	MAEA	3.799179e-01
9046	MAEL	1.392781e-01
9047	MAF	5.888321e-01
Done

Running MutSig 2:
Scatter job 100: processing genes 8958 - 9047
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LYST
Processing conservation and coverage...
86% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
Cons ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
KS ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
LYST   10000 perm   4 sec   (2820 perm/sec)   p_kst 6.176000e-01   p_cons 6.720000e-01   p_joint 8.238000e-01

Outputting figure to mutsig2_images.part000000000100/LYST.37_11610_10000_0.6176_0.672_0.8238.png
                gene_name: LYST
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
MACF1
Processing conservation and coverage...
43% 87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
Cons ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
KS ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
MACF1   10000 perm   5 sec   (2075 perm/sec)   p_kst 2.513000e-01   p_cons 5.282000e-01   p_joint 3.362000e-01

Outputting figure to mutsig2_images.part000000000100/MACF1.31_22842_10000_0.2513_0.5282_0.3362.png
                gene_name: MACF1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 4 percent done.
LTBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
LTBP1   10000 perm   3 sec   (3864 perm/sec)   p_kst 3.762000e-01   p_cons 8.310000e-02   p_joint 1.533000e-01

Joint ci ratio: 6.647843e-02	ci left: 1.431544e-01	ci right 1.530482e-01	k: 2961	n:20000
Cons ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
KS ci ratio: 3.475748e-02	ci left: 3.819359e-01	ci right 3.954964e-01	k: 7774	n:20000
LTBP1   20000 perm   6 sec   (3594 perm/sec)   p_kst 3.887000e-01   p_cons 7.840000e-02   p_joint 1.480500e-01

Outputting figure to mutsig2_images.part000000000100/LTBP1.28_5357_20000_0.3887_0.0784_0.14805.png
                gene_name: LTBP1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 7 percent done.
LTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
LTBP2   10000 perm   3 sec   (3783 perm/sec)   p_kst 8.478000e-01   p_cons 4.419000e-01   p_joint 9.404000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP2.14_5610_10000_0.8478_0.4419_0.9404.png
                gene_name: LTBP2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 9 percent done.
MADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
Cons ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
MADD   10000 perm   2 sec   (4191 perm/sec)   p_kst 1.635000e-01   p_cons 2.200000e-02   p_joint 3.230000e-02

Joint ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
Cons ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
KS ci ratio: 6.367617e-02	ci left: 1.542037e-01	ci right 1.643956e-01	k: 3185	n:20000
MADD   20000 perm   5 sec   (3861 perm/sec)   p_kst 1.592500e-01   p_cons 3.100000e-02   p_joint 3.025000e-02

Joint ci ratio: 1.327757e-01	ci left: 2.635586e-02	ci right 3.013624e-02	k: 846	n:30000
Cons ci ratio: 1.311903e-01	ci left: 2.700110e-02	ci right 3.082419e-02	k: 866	n:30000
KS ci ratio: 5.266836e-02	ci left: 1.517459e-01	ci right 1.599875e-01	k: 4675	n:30000
MADD   30000 perm   8 sec   (3723 perm/sec)   p_kst 1.558333e-01   p_cons 2.886667e-02   p_joint 2.820000e-02

Joint ci ratio: 1.305284e-01	ci left: 2.060901e-02	ci right 2.351095e-02	k: 881	n:40000
Cons ci ratio: 1.124676e-01	ci left: 2.781493e-02	ci right 3.115384e-02	k: 1178	n:40000
KS ci ratio: 4.492979e-02	ci left: 1.562710e-01	ci right 1.634785e-01	k: 6394	n:40000
MADD   40000 perm   11 sec   (3628 perm/sec)   p_kst 1.598500e-01   p_cons 2.945000e-02   p_joint 2.202500e-02

Joint ci ratio: 1.005504e-01	ci left: 2.801475e-02	ci right 3.100021e-02	k: 1474	n:50000
Cons ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
KS ci ratio: 4.003977e-02	ci left: 1.576296e-01	ci right 1.640899e-01	k: 8042	n:50000
MADD   50000 perm   14 sec   (3555 perm/sec)   p_kst 1.608400e-01   p_cons 3.028000e-02   p_joint 2.948000e-02

Joint ci ratio: 9.260142e-02	ci left: 2.765549e-02	ci right 3.035699e-02	k: 1739	n:60000
Cons ci ratio: 8.962148e-02	ci left: 2.951345e-02	ci right 3.229883e-02	k: 1853	n:60000
KS ci ratio: 3.664079e-02	ci left: 1.572567e-01	ci right 1.631429e-01	k: 9611	n:60000
MADD   60000 perm   17 sec   (3494 perm/sec)   p_kst 1.601833e-01   p_cons 3.088333e-02   p_joint 2.898333e-02

Outputting figure to mutsig2_images.part000000000100/MADD.13_5084_60000_0.16018_0.030883_0.028983.png
                gene_name: MADD
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 11 percent done.
LY75
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
LY75   10000 perm   2 sec   (4213 perm/sec)   p_kst 9.620000e-01   p_cons 8.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LY75.9_5309_10000_0.962_0.8414_1.png
                gene_name: LY75
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
LY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
Cons ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
KS ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
LY9   10000 perm   2 sec   (5046 perm/sec)   p_kst 7.100000e-03   p_cons 7.322000e-01   p_joint 3.710000e-02

Joint ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
Cons ci ratio: 1.628910e-02	ci left: 7.371861e-01	ci right 7.493431e-01	k: 14866	n:20000
KS ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
LY9   20000 perm   4 sec   (4713 perm/sec)   p_kst 6.350000e-03   p_cons 7.433000e-01   p_joint 2.060000e-02

Joint ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
Cons ci ratio: 1.371502e-02	ci left: 7.263455e-01	ci right 7.364096e-01	k: 21942	n:30000
KS ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
LY9   30000 perm   7 sec   (4561 perm/sec)   p_kst 7.133333e-03   p_cons 7.314000e-01   p_joint 2.040000e-02

Joint ci ratio: 1.260008e-01	ci left: 2.213455e-02	ci right 2.513515e-02	k: 944	n:40000
Cons ci ratio: 1.233484e-02	ci left: 7.118542e-01	ci right 7.207144e-01	k: 28652	n:40000
KS ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
LY9   40000 perm   9 sec   (4449 perm/sec)   p_kst 7.450000e-03   p_cons 7.163000e-01   p_joint 2.360000e-02

Joint ci ratio: 8.624208e-02	ci left: 3.796616e-02	ci right 4.140755e-02	k: 1983	n:50000
Cons ci ratio: 1.101201e-02	ci left: 7.130894e-01	ci right 7.210054e-01	k: 35853	n:50000
KS ci ratio: 1.944787e-01	ci left: 7.275890e-03	ci right 8.862022e-03	k: 402	n:50000
LY9   50000 perm   11 sec   (4356 perm/sec)   p_kst 8.040000e-03   p_cons 7.170600e-01   p_joint 3.966000e-02

Joint ci ratio: 8.277246e-02	ci left: 3.453987e-02	ci right 3.753855e-02	k: 2161	n:60000
Cons ci ratio: 1.006478e-02	ci left: 7.129419e-01	ci right 7.201705e-01	k: 42994	n:60000
KS ci ratio: 1.797200e-01	ci left: 7.159405e-03	ci right 8.588814e-03	k: 471	n:60000
LY9   60000 perm   15 sec   (4098 perm/sec)   p_kst 7.850000e-03   p_cons 7.165667e-01   p_joint 3.601667e-02

Joint ci ratio: 1.062173e-01	ci left: 1.807102e-02	ci right 2.011197e-02	k: 1335	n:70000
Cons ci ratio: 8.993331e-03	ci left: 7.274546e-01	ci right 7.340406e-01	k: 51153	n:70000
KS ci ratio: 1.681939e-01	ci left: 7.052101e-03	ci right 8.360631e-03	k: 538	n:70000
LY9   70000 perm   18 sec   (3924 perm/sec)   p_kst 7.685714e-03   p_cons 7.307571e-01   p_joint 1.907143e-02

Joint ci ratio: 9.773370e-02	ci left: 1.874822e-02	ci right 2.068683e-02	k: 1576	n:80000
Cons ci ratio: 8.411045e-03	ci left: 7.277370e-01	ci right 7.338963e-01	k: 58466	n:80000
KS ci ratio: 1.610619e-01	ci left: 6.757776e-03	ci right 7.953368e-03	k: 587	n:80000
LY9   80000 perm   21 sec   (3901 perm/sec)   p_kst 7.337500e-03   p_cons 7.308250e-01   p_joint 1.970000e-02

Joint ci ratio: 9.576242e-02	ci left: 1.740177e-02	ci right 1.916280e-02	k: 1644	n:90000
Cons ci ratio: 7.936564e-03	ci left: 7.275883e-01	ci right 7.333969e-01	k: 65745	n:90000
KS ci ratio: 1.489846e-01	ci left: 7.064375e-03	ci right 8.212146e-03	k: 686	n:90000
LY9   90000 perm   23 sec   (3872 perm/sec)   p_kst 7.622222e-03   p_cons 7.305000e-01   p_joint 1.826667e-02

Joint ci ratio: 9.016669e-02	ci left: 1.771292e-02	ci right 1.939517e-02	k: 1854	n:100000
Cons ci ratio: 7.524699e-03	ci left: 7.279791e-01	ci right 7.334875e-01	k: 73074	n:100000
KS ci ratio: 1.427916e-01	ci left: 6.945646e-03	ci right 8.023217e-03	k: 747	n:100000
LY9   100000 perm   26 sec   (3836 perm/sec)   p_kst 7.470000e-03   p_cons 7.307400e-01   p_joint 1.854000e-02

Joint ci ratio: 7.626417e-02	ci left: 2.255930e-02	ci right 2.435685e-02	k: 2579	n:110000
Cons ci ratio: 6.936162e-03	ci left: 7.412367e-01	ci right 7.464050e-01	k: 81821	n:110000
KS ci ratio: 1.361299e-01	ci left: 6.972266e-03	ci right 7.999412e-03	k: 822	n:110000
LY9   110000 perm   29 sec   (3784 perm/sec)   p_kst 7.472727e-03   p_cons 7.438273e-01   p_joint 2.344545e-02

Joint ci ratio: 7.171749e-02	ci left: 2.341977e-02	ci right 2.516999e-02	k: 2914	n:120000
Cons ci ratio: 6.635683e-03	ci left: 7.416461e-01	ci right 7.465921e-01	k: 89295	n:120000
KS ci ratio: 1.274908e-01	ci left: 7.318084e-03	ci right 8.322587e-03	k: 937	n:120000
LY9   120000 perm   32 sec   (3741 perm/sec)   p_kst 7.808333e-03   p_cons 7.441250e-01   p_joint 2.428333e-02

Joint ci ratio: 6.956051e-02	ci left: 2.301602e-02	ci right 2.468224e-02	k: 3099	n:130000
Cons ci ratio: 6.370111e-03	ci left: 7.420581e-01	ci right 7.468079e-01	k: 96777	n:130000
KS ci ratio: 1.229883e-01	ci left: 7.276739e-03	ci right 8.237721e-03	k: 1007	n:130000
LY9   130000 perm   35 sec   (3696 perm/sec)   p_kst 7.746154e-03   p_cons 7.444385e-01   p_joint 2.383846e-02

Joint ci ratio: 7.237928e-02	ci left: 1.977813e-02	ci right 2.127039e-02	k: 2872	n:140000
Cons ci ratio: 6.138323e-03	ci left: 7.421495e-01	ci right 7.467261e-01	k: 104222	n:140000
KS ci ratio: 1.182152e-01	ci left: 7.331959e-03	ci right 8.260029e-03	k: 1090	n:140000
LY9   140000 perm   38 sec   (3652 perm/sec)   p_kst 7.785714e-03   p_cons 7.444429e-01   p_joint 2.051429e-02

Joint ci ratio: 7.051450e-02	ci left: 1.947435e-02	ci right 2.090428e-02	k: 3027	n:150000
Cons ci ratio: 5.933553e-03	ci left: 7.420107e-01	ci right 7.464332e-01	k: 111634	n:150000
KS ci ratio: 1.142525e-01	ci left: 7.341574e-03	ci right 8.237609e-03	k: 1167	n:150000
LY9   150000 perm   42 sec   (3608 perm/sec)   p_kst 7.780000e-03   p_cons 7.442267e-01   p_joint 2.018000e-02

Joint ci ratio: 6.982311e-02	ci left: 1.864377e-02	ci right 1.999873e-02	k: 3090	n:160000
Cons ci ratio: 5.744221e-03	ci left: 7.421423e-01	ci right 7.464238e-01	k: 119086	n:160000
KS ci ratio: 1.104846e-01	ci left: 7.374755e-03	ci right 8.243223e-03	k: 1248	n:160000
LY9   160000 perm   45 sec   (3560 perm/sec)   p_kst 7.800000e-03   p_cons 7.442875e-01   p_joint 1.931250e-02

Joint ci ratio: 6.707689e-02	ci left: 1.903309e-02	ci right 2.035983e-02	k: 3347	n:170000
Cons ci ratio: 5.572616e-03	ci left: 7.422132e-01	ci right 7.463667e-01	k: 126530	n:170000
KS ci ratio: 1.069854e-01	ci left: 7.415912e-03	ci right 8.259825e-03	k: 1331	n:170000
LY9   170000 perm   48 sec   (3519 perm/sec)   p_kst 7.829412e-03   p_cons 7.442941e-01   p_joint 1.968824e-02

Joint ci ratio: 6.290736e-02	ci left: 2.045195e-02	ci right 2.178575e-02	k: 3800	n:180000
Cons ci ratio: 5.422877e-03	ci left: 7.417600e-01	ci right 7.457989e-01	k: 133881	n:180000
KS ci ratio: 1.043955e-01	ci left: 7.366290e-03	ci right 8.183016e-03	k: 1398	n:180000
LY9   180000 perm   52 sec   (3477 perm/sec)   p_kst 7.766667e-03   p_cons 7.437833e-01   p_joint 2.111111e-02

Joint ci ratio: 6.330946e-02	ci left: 1.915238e-02	ci right 2.040970e-02	k: 3757	n:190000
Cons ci ratio: 5.271961e-03	ci left: 7.422687e-01	ci right 7.461975e-01	k: 141405	n:190000
KS ci ratio: 1.016362e-01	ci left: 7.373414e-03	ci right 8.168031e-03	k: 1475	n:190000
LY9   190000 perm   55 sec   (3434 perm/sec)   p_kst 7.763158e-03   p_cons 7.442368e-01   p_joint 1.977368e-02

Joint ci ratio: 6.222018e-02	ci left: 1.885416e-02	ci right 2.006983e-02	k: 3891	n:200000
Cons ci ratio: 5.145043e-03	ci left: 7.418307e-01	ci right 7.456622e-01	k: 148750	n:200000
KS ci ratio: 9.838478e-02	ci left: 7.487384e-03	ci right 8.266981e-03	k: 1574	n:200000
LY9   200000 perm   59 sec   (3392 perm/sec)   p_kst 7.870000e-03   p_cons 7.437500e-01   p_joint 1.945500e-02

Outputting figure to mutsig2_images.part000000000100/LY9.8_2140_200000_0.00787_0.74375_0.019455.png
                gene_name: LY9
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 16 percent done.
LST-3TM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
LST-3TM12   10000 perm   2 sec   (5070 perm/sec)   p_kst 4.169000e-01   p_cons 9.280000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000100/LST-3TM12.7_1973_10000_0.4169_0.928_0.741.png
                gene_name: LST-3TM12
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 18 percent done.
LTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
Cons ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
KS ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
LTF   10000 perm   2 sec   (5301 perm/sec)   p_kst 4.719000e-01   p_cons 7.334000e-01   p_joint 7.228000e-01

Outputting figure to mutsig2_images.part000000000100/LTF.7_2201_10000_0.4719_0.7334_0.7228.png
                gene_name: LTF
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 20 percent done.
LUM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
Cons ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
KS ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
LUM   10000 perm   2 sec   (5543 perm/sec)   p_kst 3.113000e-01   p_cons 7.614000e-01   p_joint 5.102000e-01

Outputting figure to mutsig2_images.part000000000100/LUM.6_1025_10000_0.3113_0.7614_0.5102.png
                gene_name: LUM
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 22 percent done.
LUZP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
Cons ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
LUZP1   10000 perm   2 sec   (5047 perm/sec)   p_kst 3.659000e-01   p_cons 7.626000e-01   p_joint 6.175000e-01

Outputting figure to mutsig2_images.part000000000100/LUZP1.6_3239_10000_0.3659_0.7626_0.6175.png
                gene_name: LUZP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 24 percent done.
LUZP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
KS ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
LUZP2   10000 perm   2 sec   (5644 perm/sec)   p_kst 2.949000e-01   p_cons 1.600000e-01   p_joint 3.194000e-01

Outputting figure to mutsig2_images.part000000000100/LUZP2.6_1089_10000_0.2949_0.16_0.3194.png
                gene_name: LUZP2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 27 percent done.
LUC7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
Cons ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
KS ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
LUC7L   10000 perm   2 sec   (6542 perm/sec)   p_kst 5.770000e-02   p_cons 8.846000e-01   p_joint 1.226000e-01

Joint ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
Cons ci ratio: 9.477707e-03	ci left: 8.910251e-01	ci right 8.995596e-01	k: 17907	n:20000
KS ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
LUC7L   20000 perm   3 sec   (5791 perm/sec)   p_kst 5.670000e-02   p_cons 8.953500e-01   p_joint 8.725000e-02

Joint ci ratio: 6.935618e-02	ci left: 9.288589e-02	ci right 9.959253e-02	k: 2886	n:30000
Cons ci ratio: 7.814318e-03	ci left: 8.899545e-01	ci right 8.969691e-01	k: 26805	n:30000
KS ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
LUC7L   30000 perm   5 sec   (5502 perm/sec)   p_kst 5.550000e-02   p_cons 8.935000e-01   p_joint 9.620000e-02

Outputting figure to mutsig2_images.part000000000100/LUC7L.5_1160_30000_0.0555_0.8935_0.0962.png
                gene_name: LUC7L
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 29 percent done.
LYZL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
Cons ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
KS ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
LYZL2   10000 perm   1 sec   (6802 perm/sec)   p_kst 2.002000e-01   p_cons 1.302000e-01   p_joint 1.445000e-01

Joint ci ratio: 4.766010e-02	ci left: 2.466887e-01	ci right 2.587833e-01	k: 5054	n:20000
Cons ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
KS ci ratio: 5.560159e-02	ci left: 1.934859e-01	ci right 2.046018e-01	k: 3980	n:20000
LYZL2   20000 perm   3 sec   (5994 perm/sec)   p_kst 1.990000e-01   p_cons 1.118500e-01   p_joint 2.527000e-01

Outputting figure to mutsig2_images.part000000000100/LYZL2.5_605_20000_0.199_0.11185_0.2527.png
                gene_name: LYZL2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 31 percent done.
LZTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
LZTR1   10000 perm   2 sec   (5557 perm/sec)   p_kst 6.163000e-01   p_cons 3.051000e-01   p_joint 7.532000e-01

Outputting figure to mutsig2_images.part000000000100/LZTR1.5_2607_10000_0.6163_0.3051_0.7532.png
                gene_name: LZTR1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 33 percent done.
MAD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
Cons ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
MAD1L1   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.921000e-01   p_cons 6.640000e-02   p_joint 5.290000e-02

Joint ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
Cons ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
KS ci ratio: 5.668827e-02	ci left: 1.874515e-01	ci right 1.984379e-01	k: 3858	n:20000
MAD1L1   20000 perm   4 sec   (5200 perm/sec)   p_kst 1.929000e-01   p_cons 6.710000e-02   p_joint 6.650000e-02

Joint ci ratio: 8.060908e-02	ci left: 7.011383e-02	ci right 7.603584e-02	k: 2191	n:30000
Cons ci ratio: 8.431967e-02	ci left: 6.435954e-02	ci right 7.005796e-02	k: 2015	n:30000
KS ci ratio: 4.623403e-02	ci left: 1.888117e-01	ci right 1.977811e-01	k: 5798	n:30000
MAD1L1   30000 perm   6 sec   (4951 perm/sec)   p_kst 1.932667e-01   p_cons 6.716667e-02   p_joint 7.303333e-02

Outputting figure to mutsig2_images.part000000000100/MAD1L1.5_2225_30000_0.19327_0.067167_0.073033.png
                gene_name: MAD1L1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 36 percent done.
LUZP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
Cons ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
KS ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
LUZP4   10000 perm   2 sec   (6549 perm/sec)   p_kst 2.271000e-01   p_cons 5.545000e-01   p_joint 4.383000e-01

Outputting figure to mutsig2_images.part000000000100/LUZP4.4_958_10000_0.2271_0.5545_0.4383.png
                gene_name: LUZP4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 38 percent done.
LY86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
LY86   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.979000e-01   p_cons 9.912000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000100/LY86.4_509_10000_0.1979_0.9912_0.3582.png
                gene_name: LY86
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 40 percent done.
LYAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
LYAR   10000 perm   2 sec   (6089 perm/sec)   p_kst 6.169000e-01   p_cons 3.510000e-02   p_joint 1.348000e-01

Joint ci ratio: 6.774517e-02	ci left: 1.385205e-01	ci right 1.482834e-01	k: 2867	n:20000
Cons ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
KS ci ratio: 2.217633e-02	ci left: 6.028988e-01	ci right 6.164693e-01	k: 12194	n:20000
LYAR   20000 perm   4 sec   (5428 perm/sec)   p_kst 6.097000e-01   p_cons 3.890000e-02   p_joint 1.433500e-01

Joint ci ratio: 7.145683e-02	ci left: 8.789968e-02	ci right 9.444641e-02	k: 2734	n:30000
Cons ci ratio: 1.148701e-01	ci left: 3.521634e-02	ci right 3.954051e-02	k: 1120	n:30000
KS ci ratio: 1.771268e-02	ci left: 6.146131e-01	ci right 6.256303e-01	k: 18604	n:30000
LYAR   30000 perm   6 sec   (5171 perm/sec)   p_kst 6.201333e-01   p_cons 3.733333e-02   p_joint 9.113333e-02

Joint ci ratio: 5.482409e-02	ci left: 1.102095e-01	ci right 1.164468e-01	k: 4532	n:40000
Cons ci ratio: 9.964252e-02	ci left: 3.539093e-02	ci right 3.912664e-02	k: 1489	n:40000
KS ci ratio: 1.533677e-02	ci left: 6.154478e-01	ci right 6.249848e-01	k: 24809	n:40000
LYAR   40000 perm   8 sec   (4988 perm/sec)   p_kst 6.202250e-01   p_cons 3.722500e-02   p_joint 1.133000e-01

Outputting figure to mutsig2_images.part000000000100/LYAR.4_1172_40000_0.62023_0.037225_0.1133.png
                gene_name: LYAR
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 42 percent done.
LYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
Cons ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
LYN   10000 perm   2 sec   (6221 perm/sec)   p_kst 3.980000e-02   p_cons 5.936000e-01   p_joint 6.500000e-02

Joint ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
Cons ci ratio: 2.293860e-02	ci left: 5.866545e-01	ci right 6.003183e-01	k: 11870	n:20000
KS ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
LYN   20000 perm   4 sec   (5581 perm/sec)   p_kst 4.120000e-02   p_cons 5.935000e-01   p_joint 8.355000e-02

Joint ci ratio: 9.569744e-02	ci left: 5.042643e-02	ci right 5.552724e-02	k: 1588	n:30000
Cons ci ratio: 1.864823e-02	ci left: 5.900207e-01	ci right 6.011607e-01	k: 17868	n:30000
KS ci ratio: 1.089940e-01	ci left: 3.907619e-02	ci right 4.361318e-02	k: 1239	n:30000
LYN   30000 perm   6 sec   (5315 perm/sec)   p_kst 4.130000e-02   p_cons 5.956000e-01   p_joint 5.293333e-02

Joint ci ratio: 7.935203e-02	ci left: 5.521380e-02	ci right 5.980070e-02	k: 2299	n:40000
Cons ci ratio: 1.614999e-02	ci left: 5.907712e-01	ci right 6.004149e-01	k: 23824	n:40000
KS ci ratio: 9.601890e-02	ci left: 3.807617e-02	ci right 4.194097e-02	k: 1599	n:40000
LYN   40000 perm   8 sec   (5145 perm/sec)   p_kst 3.997500e-02   p_cons 5.956000e-01   p_joint 5.747500e-02

Outputting figure to mutsig2_images.part000000000100/LYN.4_1587_40000_0.039975_0.5956_0.057475.png
                gene_name: LYN
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 44 percent done.
LYPLAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
LYPLAL1   10000 perm   2 sec   (6103 perm/sec)   p_kst 7.130000e-01   p_cons 4.266000e-01   p_joint 7.784000e-01

Outputting figure to mutsig2_images.part000000000100/LYPLAL1.4_734_10000_0.713_0.4266_0.7784.png
                gene_name: LYPLAL1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 47 percent done.
LYZL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
Cons ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
KS ci ratio: 2.092186e-02	ci left: 7.700281e-01	ci right 7.864095e-01	k: 7783	n:10000
LYZL1   10000 perm   1 sec   (6781 perm/sec)   p_kst 7.783000e-01   p_cons 5.010000e-01   p_joint 7.967000e-01

Outputting figure to mutsig2_images.part000000000100/LYZL1.4_605_10000_0.7783_0.501_0.7967.png
                gene_name: LYZL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 49 percent done.
MAB21L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
KS ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
MAB21L1   10000 perm   2 sec   (6052 perm/sec)   p_kst 1.700000e-02   p_cons 1.526000e-01   p_joint 1.450000e-02

Joint ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
Cons ci ratio: 6.568640e-02	ci left: 1.461624e-01	ci right 1.561392e-01	k: 3022	n:20000
KS ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
MAB21L1   20000 perm   4 sec   (5344 perm/sec)   p_kst 1.880000e-02   p_cons 1.511000e-01   p_joint 1.180000e-02

Joint ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
Cons ci ratio: 5.388876e-02	ci left: 1.458779e-01	ci right 1.539900e-01	k: 4497	n:30000
KS ci ratio: 1.656074e-01	ci left: 1.681341e-02	ci right 1.988088e-02	k: 549	n:30000
MAB21L1   30000 perm   6 sec   (5119 perm/sec)   p_kst 1.830000e-02   p_cons 1.499000e-01   p_joint 1.156667e-02

Joint ci ratio: 2.232299e-01	ci left: 6.795933e-03	ci right 8.526693e-03	k: 305	n:40000
Cons ci ratio: 4.671651e-02	ci left: 1.461672e-01	ci right 1.531838e-01	k: 5986	n:40000
KS ci ratio: 1.445629e-01	ci left: 1.674379e-02	ci right 1.937684e-02	k: 721	n:40000
MAB21L1   40000 perm   8 sec   (4971 perm/sec)   p_kst 1.802500e-02   p_cons 1.496500e-01   p_joint 7.625000e-03

Joint ci ratio: 1.346825e-01	ci left: 1.553690e-02	ci right 1.779972e-02	k: 832	n:50000
Cons ci ratio: 4.192219e-02	ci left: 1.457108e-01	ci right 1.519700e-01	k: 7441	n:50000
KS ci ratio: 1.288297e-01	ci left: 1.700762e-02	ci right 1.936879e-02	k: 908	n:50000
MAB21L1   50000 perm   10 sec   (4840 perm/sec)   p_kst 1.816000e-02   p_cons 1.488200e-01   p_joint 1.664000e-02

Joint ci ratio: 1.243857e-01	ci left: 1.526960e-02	ci right 1.731091e-02	k: 976	n:60000
Cons ci ratio: 3.828319e-02	ci left: 1.458949e-01	ci right 1.516058e-01	k: 8924	n:60000
KS ci ratio: 1.188201e-01	ci left: 1.675705e-02	ci right 1.888996e-02	k: 1068	n:60000
MAB21L1   60000 perm   13 sec   (4732 perm/sec)   p_kst 1.780000e-02   p_cons 1.487333e-01   p_joint 1.626667e-02

Joint ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
Cons ci ratio: 3.542639e-02	ci left: 1.462277e-01	ci right 1.515157e-01	k: 10420	n:70000
KS ci ratio: 1.110611e-01	ci left: 1.651374e-02	ci right 1.846941e-02	k: 1223	n:70000
MAB21L1   70000 perm   15 sec   (4629 perm/sec)   p_kst 1.747143e-02   p_cons 1.488571e-01   p_joint 1.225714e-02

Joint ci ratio: 1.245785e-01	ci left: 1.146289e-02	ci right 1.299779e-02	k: 977	n:80000
Cons ci ratio: 3.309222e-02	ci left: 1.467500e-01	ci right 1.517004e-01	k: 11937	n:80000
KS ci ratio: 1.043009e-01	ci left: 1.644431e-02	ci right 1.826594e-02	k: 1387	n:80000
MAB21L1   80000 perm   18 sec   (4545 perm/sec)   p_kst 1.733750e-02   p_cons 1.492125e-01   p_joint 1.221250e-02

Joint ci ratio: 1.171443e-01	ci left: 1.156852e-02	ci right 1.301873e-02	k: 1105	n:90000
Cons ci ratio: 3.115910e-02	ci left: 1.472203e-01	ci right 1.518912e-01	k: 13459	n:90000
KS ci ratio: 9.844826e-02	ci left: 1.645818e-02	ci right 1.817313e-02	k: 1557	n:90000
MAB21L1   90000 perm   20 sec   (4474 perm/sec)   p_kst 1.730000e-02   p_cons 1.495444e-01   p_joint 1.227778e-02

Joint ci ratio: 1.112654e-01	ci left: 1.157740e-02	ci right 1.295110e-02	k: 1225	n:100000
Cons ci ratio: 2.955729e-02	ci left: 1.473647e-01	ci right 1.517957e-01	k: 14957	n:100000
KS ci ratio: 9.309875e-02	ci left: 1.660837e-02	ci right 1.823979e-02	k: 1741	n:100000
MAB21L1   100000 perm   23 sec   (4403 perm/sec)   p_kst 1.741000e-02   p_cons 1.495700e-01   p_joint 1.225000e-02

Joint ci ratio: 9.274196e-02	ci left: 1.524009e-02	ci right 1.673104e-02	k: 1757	n:110000
Cons ci ratio: 2.819165e-02	ci left: 1.473794e-01	ci right 1.516027e-01	k: 16443	n:110000
KS ci ratio: 8.915052e-02	ci left: 1.650211e-02	ci right 1.805076e-02	k: 1899	n:110000
MAB21L1   110000 perm   25 sec   (4331 perm/sec)   p_kst 1.726364e-02   p_cons 1.494818e-01   p_joint 1.597273e-02

Outputting figure to mutsig2_images.part000000000100/MAB21L1.4_1084_110000_0.017264_0.14948_0.015973.png
                gene_name: MAB21L1
               theta_stop: 0.093 
                    nperm: 110000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 51 percent done.
MACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
Cons ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
MACC1   10000 perm   2 sec   (5439 perm/sec)   p_kst 4.540000e-02   p_cons 2.788000e-01   p_joint 8.760000e-02

Joint ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
Cons ci ratio: 4.526139e-02	ci left: 2.665363e-01	ci right 2.789298e-01	k: 5454	n:20000
KS ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
MACC1   20000 perm   4 sec   (4899 perm/sec)   p_kst 4.390000e-02   p_cons 2.727000e-01   p_joint 8.165000e-02

Joint ci ratio: 1.000261e-01	ci left: 4.625897e-02	ci right 5.116224e-02	k: 1460	n:30000
Cons ci ratio: 3.670749e-02	ci left: 2.703503e-01	ci right 2.804932e-01	k: 8262	n:30000
KS ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
MACC1   30000 perm   6 sec   (4689 perm/sec)   p_kst 4.423333e-02   p_cons 2.754000e-01   p_joint 4.866667e-02

Joint ci ratio: 8.634624e-02	ci left: 4.688035e-02	ci right 5.113543e-02	k: 1959	n:40000
Cons ci ratio: 3.169699e-02	ci left: 2.721953e-01	ci right 2.809871e-01	k: 11063	n:40000
KS ci ratio: 8.892905e-02	ci left: 4.426122e-02	ci right 4.840496e-02	k: 1852	n:40000
MACC1   40000 perm   9 sec   (4545 perm/sec)   p_kst 4.630000e-02   p_cons 2.765750e-01   p_joint 4.897500e-02

Outputting figure to mutsig2_images.part000000000100/MACC1.4_2575_40000_0.0463_0.27658_0.048975.png
                gene_name: MACC1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 53 percent done.
MACROD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
MACROD2   10000 perm   2 sec   (5850 perm/sec)   p_kst 9.174000e-01   p_cons 6.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/MACROD2.4_1419_10000_0.9174_0.6994_1.png
                gene_name: MACROD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
MAEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
Cons ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
MAEL   10000 perm   2 sec   (5740 perm/sec)   p_kst 2.185000e-01   p_cons 8.826000e-01   p_joint 4.136000e-01

Outputting figure to mutsig2_images.part000000000100/MAEL.4_1353_10000_0.2185_0.8826_0.4136.png
                gene_name: MAEL
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 58 percent done.
LSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
Cons ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
KS ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
LSS   10000 perm   2 sec   (5619 perm/sec)   p_kst 8.813000e-01   p_cons 3.749000e-01   p_joint 6.754000e-01

Outputting figure to mutsig2_images.part000000000100/LSS.3_2287_10000_0.8813_0.3749_0.6754.png
                gene_name: LSS
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 60 percent done.
LTBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
LTBP4   10000 perm   2 sec   (4918 perm/sec)   p_kst 8.969000e-01   p_cons 1.922000e-01   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP4.3_5299_10000_0.8969_0.1922_0.5192.png
                gene_name: LTBP4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 62 percent done.
LTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
Cons ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KS ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
LTK   10000 perm   2 sec   (5623 perm/sec)   p_kst 2.030000e-01   p_cons 5.250000e-02   p_joint 7.640000e-02

Joint ci ratio: 1.386114e-01	ci left: 3.577914e-02	ci right 4.115611e-02	k: 768	n:20000
Cons ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
KS ci ratio: 5.464357e-02	ci left: 1.990274e-01	ci right 2.102586e-01	k: 4092	n:20000
LTK   20000 perm   4 sec   (5054 perm/sec)   p_kst 2.046000e-01   p_cons 5.305000e-02   p_joint 3.840000e-02

Joint ci ratio: 1.052010e-01	ci left: 4.190172e-02	ci right 4.658706e-02	k: 1326	n:30000
Cons ci ratio: 9.251276e-02	ci left: 5.384851e-02	ci right 5.910446e-02	k: 1693	n:30000
KS ci ratio: 4.482539e-02	ci left: 1.985598e-01	ci right 2.076978e-01	k: 6093	n:30000
LTK   30000 perm   6 sec   (4829 perm/sec)   p_kst 2.031000e-01   p_cons 5.643333e-02   p_joint 4.420000e-02

Joint ci ratio: 8.474437e-02	ci left: 4.861924e-02	ci right 5.294627e-02	k: 2030	n:40000
Cons ci ratio: 7.979470e-02	ci left: 5.462506e-02	ci right 5.918953e-02	k: 2275	n:40000
KS ci ratio: 3.886603e-02	ci left: 1.987944e-01	ci right 2.066988e-01	k: 8109	n:40000
LTK   40000 perm   9 sec   (4673 perm/sec)   p_kst 2.027250e-01   p_cons 5.687500e-02   p_joint 5.075000e-02

Outputting figure to mutsig2_images.part000000000100/LTK.3_2675_40000_0.20272_0.056875_0.05075.png
                gene_name: LTK
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 64 percent done.
LYPD6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
Cons ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
KS ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
LYPD6B   10000 perm   1 sec   (6784 perm/sec)   p_kst 3.586000e-01   p_cons 5.136000e-01   p_joint 5.819000e-01

Outputting figure to mutsig2_images.part000000000100/LYPD6B.3_648_10000_0.3586_0.5136_0.5819.png
                gene_name: LYPD6B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 67 percent done.
LYZL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
Cons ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
KS ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
LYZL6   10000 perm   2 sec   (6629 perm/sec)   p_kst 6.193000e-01   p_cons 2.245000e-01   p_joint 4.637000e-01

Outputting figure to mutsig2_images.part000000000100/LYZL6.3_463_10000_0.6193_0.2245_0.4637.png
                gene_name: LYZL6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 69 percent done.
LZTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
LZTS1   10000 perm   2 sec   (6020 perm/sec)   p_kst 9.339000e-01   p_cons 8.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LZTS1.3_1803_10000_0.9339_0.8531_1.png
                gene_name: LZTS1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MACROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
MACROD1   10000 perm   2 sec   (6442 perm/sec)   p_kst 7.540000e-02   p_cons 2.578000e-01   p_joint 7.850000e-02

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 4.733429e-02	ci left: 2.492680e-01	ci right 2.614032e-01	k: 5106	n:20000
KS ci ratio: 9.794374e-02	ci left: 7.050696e-02	ci right 7.781743e-02	k: 1482	n:20000
MACROD1   20000 perm   3 sec   (5749 perm/sec)   p_kst 7.410000e-02   p_cons 2.553000e-01   p_joint 1.167500e-01

Outputting figure to mutsig2_images.part000000000100/MACROD1.3_1018_20000_0.0741_0.2553_0.11675.png
                gene_name: MACROD1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 73 percent done.
MAD2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 5.034940e-02	ci left: 3.677867e-01	ci right 3.868848e-01	k: 3773	n:10000
MAD2L1   10000 perm   1 sec   (6672 perm/sec)   p_kst 3.773000e-01   p_cons 2.722000e-01   p_joint 3.076000e-01

Outputting figure to mutsig2_images.part000000000100/MAD2L1.3_638_10000_0.3773_0.2722_0.3076.png
                gene_name: MAD2L1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 76 percent done.
MADCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
Cons ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
KS ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
MADCAM1   10000 perm   2 sec   (6090 perm/sec)   p_kst 1.683000e-01   p_cons 3.112000e-01   p_joint 3.421000e-01

Outputting figure to mutsig2_images.part000000000100/MADCAM1.3_1169_10000_0.1683_0.3112_0.3421.png
                gene_name: MADCAM1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
MAEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
MAEA   10000 perm   2 sec   (6266 perm/sec)   p_kst 5.680000e-02   p_cons 8.700000e-02   p_joint 1.055000e-01

Joint ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
Cons ci ratio: 9.317593e-02	ci left: 7.749952e-02	ci right 8.512273e-02	k: 1625	n:20000
KS ci ratio: 1.126358e-01	ci left: 5.387513e-02	ci right 6.035438e-02	k: 1141	n:20000
MAEA   20000 perm   4 sec   (5599 perm/sec)   p_kst 5.705000e-02   p_cons 8.125000e-02   p_joint 5.550000e-02

Joint ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
Cons ci ratio: 7.594286e-02	ci left: 7.846068e-02	ci right 8.468730e-02	k: 2446	n:30000
KS ci ratio: 9.129107e-02	ci left: 5.525076e-02	ci right 6.056859e-02	k: 1736	n:30000
MAEA   30000 perm   6 sec   (5338 perm/sec)   p_kst 5.786667e-02   p_cons 8.153333e-02   p_joint 3.456667e-02

Joint ci ratio: 1.002733e-01	ci left: 3.495178e-02	ci right 3.866586e-02	k: 1471	n:40000
Cons ci ratio: 6.499809e-02	ci left: 8.063441e-02	ci right 8.607625e-02	k: 3333	n:40000
KS ci ratio: 7.964638e-02	ci left: 5.482130e-02	ci right 5.939327e-02	k: 2283	n:40000
MAEA   40000 perm   8 sec   (5164 perm/sec)   p_kst 5.707500e-02   p_cons 8.332500e-02   p_joint 3.677500e-02

Joint ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
Cons ci ratio: 5.825444e-02	ci left: 8.061582e-02	ci right 8.547272e-02	k: 4151	n:50000
KS ci ratio: 7.173233e-02	ci left: 5.433474e-02	ci right 5.839696e-02	k: 2817	n:50000
MAEA   50000 perm   10 sec   (5035 perm/sec)   p_kst 5.634000e-02   p_cons 8.302000e-02   p_joint 3.208000e-02

Outputting figure to mutsig2_images.part000000000100/MAEA.3_1227_50000_0.05634_0.08302_0.03208.png
                gene_name: MAEA
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 80 percent done.
LTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
LTA   10000 perm   1 sec   (7519 perm/sec)   p_kst 1.454000e-01   p_cons 8.207000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LTA.2_630_10000_0.1454_0.8207_1.png
                gene_name: LTA
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
LTB4R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
KS ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
LTB4R   10000 perm   1 sec   (6811 perm/sec)   p_kst 2.454000e-01   p_cons 5.478000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LTB4R.2_1063_10000_0.2454_0.5478_1.png
                gene_name: LTB4R
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
LTBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.905110e-03	ci left: 9.748256e-01	ci right 9.806915e-01	k: 9779	n:10000
Cons ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
KS ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
LTBP3   10000 perm   2 sec   (5771 perm/sec)   p_kst 1.127000e-01   p_cons 8.637000e-01   p_joint 9.779000e-01

Joint ci ratio: 2.644053e-02	ci left: 5.166002e-01	ci right 5.304930e-01	k: 10471	n:20000
Cons ci ratio: 1.107286e-02	ci left: 8.575482e-01	ci right 8.671462e-01	k: 17248	n:20000
KS ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
LTBP3   20000 perm   4 sec   (5141 perm/sec)   p_kst 1.119000e-01   p_cons 8.624000e-01   p_joint 5.235500e-01

Outputting figure to mutsig2_images.part000000000100/LTBP3.2_4024_20000_0.1119_0.8624_0.52355.png
                gene_name: LTBP3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 87 percent done.
LTV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 9.918711e-03	ci left: 9.350622e-01	ci right 9.444796e-01	k: 9399	n:10000
LTV1   10000 perm   2 sec   (6606 perm/sec)   p_kst 9.399000e-01   p_cons 1.248000e-01   p_joint 1.863000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
KS ci ratio: 7.054694e-03	ci left: 9.357989e-01	ci right 9.424728e-01	k: 18784	n:20000
LTV1   20000 perm   3 sec   (5876 perm/sec)   p_kst 9.392000e-01   p_cons 1.241500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LTV1.2_1472_20000_0.9392_0.12415_1.png
                gene_name: LTV1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
LY6G6F
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 91 percent done.
LYPD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
Cons ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
KS ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
LYPD6   10000 perm   1 sec   (7163 perm/sec)   p_kst 5.808000e-01   p_cons 4.359000e-01   p_joint 5.236000e-01

Outputting figure to mutsig2_images.part000000000100/LYPD6.2_532_10000_0.5808_0.4359_0.5236.png
                gene_name: LYPD6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 93 percent done.
LYSMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
Cons ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
LYSMD4   10000 perm   1 sec   (6822 perm/sec)   p_kst 4.000000e-01   p_cons 3.864000e-01   p_joint 5.532000e-01

Outputting figure to mutsig2_images.part000000000100/LYSMD4.2_910_10000_0.4_0.3864_0.5532.png
                gene_name: LYSMD4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 96 percent done.
MAB21L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
Cons ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KS ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
MAB21L2   10000 perm   1 sec   (6869 perm/sec)   p_kst 1.523000e-01   p_cons 5.242000e-01   p_joint 4.033000e-01

Outputting figure to mutsig2_images.part000000000100/MAB21L2.2_1084_10000_0.1523_0.5242_0.4033.png
                gene_name: MAB21L2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 98 percent done.
MAD2L1BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
Cons ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
KS ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
MAD2L1BP   10000 perm   2 sec   (5545 perm/sec)   p_kst 3.530000e-01   p_cons 5.488000e-01   p_joint 8.432000e-01

Outputting figure to mutsig2_images.part000000000100/MAD2L1BP.2_987_10000_0.353_0.5488_0.8432.png
                gene_name: MAD2L1BP
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000100
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 100 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 4422157: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000101> was used as the working directory.
Started at Wed Oct 24 17:58:45 2012
Results reported at Wed Oct 24 21:15:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000101.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000101.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 101  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000101.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11978.25 sec.
    Max Memory :      5352 MB
    Max Swap   :      7703 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
101
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 101
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 101: processing genes 9048 - 9137
Calculating significance of each gene.
Using projection method.
9048	MAF1	1.204790e-01
9049	MAFB	1
9050	MAFF	1
9051	MAFG	3.108125e-01
9052	MAFK	1
9053	MAG	7.061972e-01
9054	MAGEA1	6.865617e-01
9055	MAGEA10	2.220361e-02
9056	MAGEA11	3.830184e-02
9057	MAGEA12	1
9058	MAGEA3	3.189991e-02
9059	MAGEA4	4.062218e-02
9060	MAGEA5	9.336545e-02
9061	MAGEA6	1
9062	MAGEA8	1
9063	MAGEB1	8.081729e-01
9064	MAGEB10	1
9065	MAGEB16	1.572650e-02
9066	MAGEB18	1.461881e-05
9067	MAGEB2	9.211634e-03
9068	MAGEB3	1
9069	MAGEB4	4.685569e-01
9070	MAGEB6	7.819350e-01
9071	MAGEC1	1.298961e-13
9072	MAGEC2	1.093605e-04
9073	MAGEC3	1
9074	MAGED1	5.912781e-01
9075	MAGED2	4.674152e-01
9076	MAGEE1	5.061809e-02
9077	MAGEE2	1.782211e-02
9078	MAGEF1	5.158751e-01
9079	MAGEH1	3.205900e-01
In gene MAGEL2 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1708    n = 1	mu =   5.35e-07
9080	MAGEL2	4.518311e-01
9081	MAGI1	2.401961e-01
9082	MAGI2	3.032409e-01
9083	MAGI3	9.978321e-01
9084	MAGIX	1
9085	MAGOH	3.730490e-01
9086	MAGOHB	2.760837e-01
9087	MAGT1	4.436547e-02
9088	MAK	8.782447e-01
9089	MAK16	8.704833e-01
9090	MAL	1.001115e-01
9091	MAL2	1
9092	MALL	1
9093	MALT1	2.090905e-01
9094	MAMDC2	1
9095	MAMDC4	9.972538e-01
9096	MAML1	6.566709e-01
9097	MAML2	9.050258e-01
9098	MAML3	7.089495e-01
9099	MAMLD1	1
9100	MAMSTR	1
9101	MAN1A1	1
9102	MAN1A2	2.648990e-01
In gene MAN1B1 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 1831    n = 1	mu =   3.35e-07
9103	MAN1B1	6.250785e-01
9104	MAN1C1	7.878794e-01
9105	MAN2A1	2.232798e-01
9106	MAN2A2	1
9107	MAN2B1	9.649057e-01
9108	MAN2B2	9.471683e-01
9109	MAN2C1	9.832263e-01
9110	MANBA	6.186757e-01
9111	MANBAL	4.001407e-01
9112	MANEA	2.096552e-01
9113	MANEAL	1
9114	MANF	3.920515e-01
9115	MANSC1	9.399043e-01
9116	MAOA	4.287667e-01
9117	MAOB	8.840384e-01
9118	MAP1A	9.982004e-01
9119	MAP1B	1
9120	MAP1D	1.586751e-01
9121	MAP1LC3A	1
9122	MAP1LC3B	1
9123	MAP1LC3B2	1.921069e-01
9124	MAP1LC3C	3.339360e-02
9125	MAP1S	1
9126	MAP2	9.985256e-01
9127	MAP2K1	2.787763e-02
9128	MAP2K2	7.984831e-01
9129	MAP2K3	1.214369e-01
9130	MAP2K4	2.516515e-01
9131	MAP2K5	1
9132	MAP2K6	8.287264e-01
9133	MAP2K7	5.943674e-01
9134	MAP3K1	8.761454e-01
9135	MAP3K10	1
9136	MAP3K11	1.770264e-01
9137	MAP3K12	9.508326e-01
Done

Running MutSig 2:
Scatter job 101: processing genes 9048 - 9137
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MAGEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
Cons ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
MAGEC1   10000 perm   3 sec   (3716 perm/sec)   p_kst 6.935000e-01   p_cons 3.761000e-01   p_joint 6.743000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEC1.40_3437_10000_0.6935_0.3761_0.6743.png
                gene_name: MAGEC1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 2 percent done.
MAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
MAP2   10000 perm   3 sec   (3942 perm/sec)   p_kst 5.244000e-01   p_cons 2.574000e-01   p_joint 4.976000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2.17_5804_10000_0.5244_0.2574_0.4976.png
                gene_name: MAP2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 3 percent done.
MAGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
Cons ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
KS ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
MAGI1   10000 perm   2 sec   (4295 perm/sec)   p_kst 8.007000e-01   p_cons 1.796000e-01   p_joint 4.036000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI1.16_4715_10000_0.8007_0.1796_0.4036.png
                gene_name: MAGI1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 5 percent done.
MAGEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
MAGEC2   10000 perm   2 sec   (5437 perm/sec)   p_kst 7.534000e-01   p_cons 8.907000e-01   p_joint 9.610000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEC2.15_1126_10000_0.7534_0.8907_0.961.png
                gene_name: MAGEC2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 6 percent done.
MAGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
Cons ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
MAGI2   10000 perm   2 sec   (4461 perm/sec)   p_kst 2.203000e-01   p_cons 5.081000e-01   p_joint 3.271000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI2.15_4456_10000_0.2203_0.5081_0.3271.png
                gene_name: MAGI2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 8 percent done.
MAGEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
MAGEC3   10000 perm   2 sec   (5386 perm/sec)   p_kst 7.330000e-01   p_cons 5.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEC3.13_2330_10000_0.733_0.5706_1.png
                gene_name: MAGEC3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
MAGEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
MAGEL2   10000 perm   2 sec   (4869 perm/sec)   p_kst 2.000000e-04   p_cons 6.918000e-01   p_joint 1.020000e-02

Joint ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
Cons ci ratio: 1.790829e-02	ci left: 6.991283e-01	ci right 7.118120e-01	k: 14110	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
MAGEL2   20000 perm   5 sec   (4391 perm/sec)   p_kst 2.500000e-04   p_cons 7.055000e-01   p_joint 5.200000e-03

Joint ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
Cons ci ratio: 1.506800e-02	ci left: 6.876114e-01	ci right 6.980845e-01	k: 20786	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
MAGEL2   30000 perm   7 sec   (4213 perm/sec)   p_kst 1.666667e-04   p_cons 6.928667e-01   p_joint 3.700000e-03

Joint ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
Cons ci ratio: 1.305981e-02	ci left: 6.879765e-01	ci right 6.970455e-01	k: 27701	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
MAGEL2   40000 perm   10 sec   (4091 perm/sec)   p_kst 1.250000e-04   p_cons 6.925250e-01   p_joint 3.050000e-03

Joint ci ratio: 3.559286e-01	ci left: 1.990227e-03	ci right 2.869137e-03	k: 120	n:50000
Cons ci ratio: 1.173940e-02	ci left: 6.863266e-01	ci right 6.944513e-01	k: 34520	n:50000
KS ci ratio: 1.600221e+00	ci left: 3.247050e-05	ci right 2.333511e-04	k: 5	n:50000
MAGEL2   50000 perm   13 sec   (3991 perm/sec)   p_kst 1.000000e-04   p_cons 6.904000e-01   p_joint 2.400000e-03

Joint ci ratio: 3.408139e-01	ci left: 1.825792e-03	ci right 2.590305e-03	k: 131	n:60000
Cons ci ratio: 1.099237e-02	ci left: 6.756821e-01	ci right 6.831672e-01	k: 40766	n:60000
KS ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
MAGEL2   60000 perm   15 sec   (3912 perm/sec)   p_kst 1.166667e-04   p_cons 6.794333e-01   p_joint 2.183333e-03

Joint ci ratio: 3.936933e-01	ci left: 1.136729e-03	ci right 1.705890e-03	k: 98	n:70000
Cons ci ratio: 9.605147e-03	ci left: 7.006888e-01	ci right 7.074657e-01	k: 49286	n:70000
KS ci ratio: 1.239515e+00	ci left: 5.879268e-05	ci right 2.440545e-04	k: 9	n:70000
MAGEL2   70000 perm   18 sec   (3836 perm/sec)   p_kst 1.285714e-04   p_cons 7.040857e-01   p_joint 1.400000e-03

Joint ci ratio: 3.517513e-01	ci left: 1.277971e-03	ci right 1.834183e-03	k: 123	n:80000
Cons ci ratio: 8.730145e-03	ci left: 7.127859e-01	ci right 7.190484e-01	k: 57274	n:80000
KS ci ratio: 1.239528e+00	ci left: 5.144341e-05	ci right 2.135493e-04	k: 9	n:80000
MAGEL2   80000 perm   21 sec   (3771 perm/sec)   p_kst 1.125000e-04   p_cons 7.159250e-01   p_joint 1.537500e-03

Joint ci ratio: 4.062727e-01	ci left: 8.241325e-04	ci right 1.253520e-03	k: 92	n:90000
Cons ci ratio: 8.238790e-03	ci left: 7.125733e-01	ci right 7.184794e-01	k: 64398	n:90000
KS ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
MAGEL2   90000 perm   24 sec   (3707 perm/sec)   p_kst 1.333333e-04   p_cons 7.155333e-01   p_joint 1.022222e-03

Joint ci ratio: 3.769966e-01	ci left: 8.769711e-04	ci right 1.292841e-03	k: 107	n:100000
Cons ci ratio: 8.264379e-03	ci left: 6.894188e-01	ci right 6.951500e-01	k: 69229	n:100000
KS ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
MAGEL2   100000 perm   28 sec   (3616 perm/sec)   p_kst 1.200000e-04   p_cons 6.922900e-01   p_joint 1.070000e-03

Joint ci ratio: 1.895556e-01	ci left: 3.505610e-03	ci right 4.248198e-03	k: 425	n:110000
Cons ci ratio: 7.890694e-03	ci left: 6.889615e-01	ci right 6.944284e-01	k: 76087	n:110000
KS ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
MAGEL2   110000 perm   31 sec   (3497 perm/sec)   p_kst 1.272727e-04   p_cons 6.917000e-01   p_joint 3.863636e-03

Joint ci ratio: 3.423036e-01	ci left: 9.051991e-04	ci right 1.286240e-03	k: 130	n:120000
Cons ci ratio: 7.552997e-03	ci left: 6.891787e-01	ci right 6.944121e-01	k: 83016	n:120000
KS ci ratio: 1.012072e+00	ci left: 6.378417e-05	ci right 1.957391e-04	k: 14	n:120000
MAGEL2   120000 perm   35 sec   (3462 perm/sec)   p_kst 1.166667e-04   p_cons 6.918000e-01   p_joint 1.083333e-03

Joint ci ratio: 3.347304e-01	ci left: 8.777972e-04	ci right 1.237364e-03	k: 136	n:130000
Cons ci ratio: 7.260484e-03	ci left: 6.890583e-01	ci right 6.940870e-01	k: 89905	n:130000
KS ci ratio: 9.238853e-01	ci left: 7.617968e-05	ci right 2.093660e-04	k: 17	n:130000
MAGEL2   130000 perm   38 sec   (3428 perm/sec)   p_kst 1.307692e-04   p_cons 6.915769e-01   p_joint 1.046154e-03

Joint ci ratio: 3.276382e-01	ci left: 8.543897e-04	ci right 1.195392e-03	k: 142	n:140000
Cons ci ratio: 7.003499e-03	ci left: 6.887152e-01	ci right 6.935626e-01	k: 96760	n:140000
KS ci ratio: 8.992454e-01	ci left: 7.620130e-05	ci right 2.031907e-04	k: 18	n:140000
MAGEL2   140000 perm   41 sec   (3381 perm/sec)   p_kst 1.285714e-04   p_cons 6.911429e-01   p_joint 1.014286e-03

Joint ci ratio: 3.384840e-01	ci left: 7.424386e-04	ci right 1.050714e-03	k: 133	n:150000
Cons ci ratio: 6.754345e-03	ci left: 6.895364e-01	ci right 6.942162e-01	k: 103782	n:150000
KS ci ratio: 8.764773e-01	ci left: 7.626328e-05	ci right 1.977987e-04	k: 19	n:150000
MAGEL2   150000 perm   45 sec   (3312 perm/sec)   p_kst 1.266667e-04   p_cons 6.918800e-01   p_joint 8.866667e-04

Joint ci ratio: 3.533175e-01	ci left: 6.332491e-04	ci right 9.103587e-04	k: 122	n:160000
Cons ci ratio: 6.534577e-03	ci left: 6.899567e-01	ci right 6.944863e-01	k: 110756	n:160000
KS ci ratio: 8.553553e-01	ci left: 7.635487e-05	ci right 1.930458e-04	k: 20	n:160000
MAGEL2   160000 perm   49 sec   (3268 perm/sec)   p_kst 1.250000e-04   p_cons 6.922250e-01   p_joint 7.625000e-04

Joint ci ratio: 3.592190e-01	ci left: 5.745722e-04	ci right 8.311873e-04	k: 118	n:170000
Cons ci ratio: 6.339932e-03	ci left: 6.899937e-01	ci right 6.943880e-01	k: 117673	n:170000
KS ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
MAGEL2   170000 perm   53 sec   (3224 perm/sec)   p_kst 1.235294e-04   p_cons 6.921941e-01   p_joint 6.941176e-04

Joint ci ratio: 3.477201e-01	ci left: 5.831512e-04	ci right 8.333836e-04	k: 126	n:180000
Cons ci ratio: 6.165159e-03	ci left: 6.897890e-01	ci right 6.940603e-01	k: 124547	n:180000
KS ci ratio: 8.173220e-01	ci left: 7.659755e-05	ci right 1.850401e-04	k: 22	n:180000
MAGEL2   180000 perm   57 sec   (3178 perm/sec)   p_kst 1.222222e-04   p_cons 6.919278e-01   p_joint 7.000000e-04

Joint ci ratio: 3.423730e-01	ci left: 5.716868e-04	ci right 8.123923e-04	k: 130	n:190000
Cons ci ratio: 5.999857e-03	ci left: 6.899080e-01	ci right 6.940651e-01	k: 131478	n:190000
KS ci ratio: 8.173249e-01	ci left: 7.256602e-05	ci right 1.753014e-04	k: 22	n:190000
MAGEL2   190000 perm   62 sec   (3078 perm/sec)   p_kst 1.157895e-04   p_cons 6.919895e-01   p_joint 6.842105e-04

Joint ci ratio: 2.253997e-01	ci left: 1.339871e-03	ci right 1.684836e-03	k: 301	n:200000
Cons ci ratio: 5.852047e-03	ci left: 6.896609e-01	ci right 6.937136e-01	k: 138338	n:200000
KS ci ratio: 8.001166e-01	ci left: 7.290149e-05	ci right 1.725515e-04	k: 23	n:200000
MAGEL2   200000 perm   66 sec   (3050 perm/sec)   p_kst 1.150000e-04   p_cons 6.916900e-01   p_joint 1.505000e-03

Joint ci ratio: 2.224761e-01	ci left: 1.312024e-03	ci right 1.644838e-03	k: 309	n:210000
Cons ci ratio: 5.714579e-03	ci left: 6.894432e-01	ci right 6.933991e-01	k: 145199	n:210000
KS ci ratio: 7.839515e-01	ci left: 7.322634e-05	ci right 1.700433e-04	k: 24	n:210000
MAGEL2   210000 perm   70 sec   (3020 perm/sec)   p_kst 1.142857e-04   p_cons 6.914238e-01   p_joint 1.471429e-03

Joint ci ratio: 2.193182e-01	ci left: 1.291031e-03	ci right 1.613244e-03	k: 318	n:220000
Cons ci ratio: 5.582076e-03	ci left: 6.895743e-01	ci right 6.934388e-01	k: 152132	n:220000
KS ci ratio: 7.687281e-01	ci left: 7.354077e-05	ci right 1.677452e-04	k: 25	n:220000
MAGEL2   220000 perm   74 sec   (2990 perm/sec)   p_kst 1.136364e-04   p_cons 6.915091e-01   p_joint 1.445455e-03

Joint ci ratio: 2.257967e-01	ci left: 1.160991e-03	ci right 1.460499e-03	k: 300	n:230000
Cons ci ratio: 5.460831e-03	ci left: 6.895033e-01	ci right 6.932832e-01	k: 159021	n:230000
KS ci ratio: 7.687301e-01	ci left: 7.034329e-05	ci right 1.604521e-04	k: 25	n:230000
MAGEL2   230000 perm   78 sec   (2961 perm/sec)   p_kst 1.086957e-04   p_cons 6.913957e-01   p_joint 1.304348e-03

Joint ci ratio: 2.258028e-01	ci left: 1.112613e-03	ci right 1.399650e-03	k: 300	n:240000
Cons ci ratio: 5.346217e-03	ci left: 6.895142e-01	ci right 6.932145e-01	k: 165928	n:240000
KS ci ratio: 7.543603e-01	ci left: 7.076811e-05	ci right 1.587294e-04	k: 26	n:240000
MAGEL2   240000 perm   82 sec   (2933 perm/sec)   p_kst 1.083333e-04   p_cons 6.913667e-01   p_joint 1.250000e-03

Joint ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
Cons ci ratio: 5.238774e-03	ci left: 6.895050e-01	ci right 6.931306e-01	k: 172830	n:250000
KS ci ratio: 7.040077e-01	ci left: 8.096491e-05	ci right 1.713031e-04	k: 30	n:250000
MAGEL2   250000 perm   86 sec   (2904 perm/sec)   p_kst 1.200000e-04   p_cons 6.913200e-01   p_joint 5.320000e-04

Joint ci ratio: 3.348193e-01	ci left: 4.388810e-04	ci right 6.187118e-04	k: 136	n:260000
Cons ci ratio: 5.138764e-03	ci left: 6.893970e-01	ci right 6.929526e-01	k: 179706	n:260000
KS ci ratio: 6.823398e-01	ci left: 8.418600e-05	ci right 1.737435e-04	k: 32	n:260000
MAGEL2   260000 perm   90 sec   (2876 perm/sec)   p_kst 1.230769e-04   p_cons 6.911769e-01   p_joint 5.230769e-04

Joint ci ratio: 3.300367e-01	ci left: 4.362045e-04	ci right 6.118436e-04	k: 140	n:270000
Cons ci ratio: 5.045275e-03	ci left: 6.892124e-01	ci right 6.927021e-01	k: 186559	n:270000
KS ci ratio: 6.722309e-01	ci left: 8.413360e-05	ci right 1.716412e-04	k: 33	n:270000
MAGEL2   270000 perm   95 sec   (2850 perm/sec)   p_kst 1.222222e-04   p_cons 6.909593e-01   p_joint 5.185185e-04

Joint ci ratio: 3.137632e-01	ci left: 4.698729e-04	ci right 6.478727e-04	k: 155	n:280000
Cons ci ratio: 4.684879e-03	ci left: 7.126442e-01	ci right 7.159942e-01	k: 200010	n:280000
KS ci ratio: 6.532902e-01	ci left: 8.706858e-05	ci right 1.738405e-04	k: 35	n:280000
MAGEL2   280000 perm   99 sec   (2825 perm/sec)   p_kst 1.250000e-04   p_cons 7.143214e-01   p_joint 5.535714e-04

Joint ci ratio: 3.098172e-01	ci left: 4.663843e-04	ci right 6.404013e-04	k: 159	n:290000
Cons ci ratio: 4.604766e-03	ci left: 7.125518e-01	ci right 7.158439e-01	k: 207118	n:290000
KS ci ratio: 6.444018e-01	ci left: 8.694615e-05	ci right 1.718551e-04	k: 36	n:290000
MAGEL2   290000 perm   104 sec   (2798 perm/sec)   p_kst 1.241379e-04   p_cons 7.142000e-01   p_joint 5.482759e-04

Joint ci ratio: 3.005646e-01	ci left: 4.816203e-04	ci right 6.549313e-04	k: 169	n:300000
Cons ci ratio: 4.526520e-03	ci left: 7.126564e-01	ci right 7.158928e-01	k: 214283	n:300000
KS ci ratio: 6.197641e-01	ci left: 9.244429e-05	ci right 1.777100e-04	k: 39	n:300000
MAGEL2   300000 perm   108 sec   (2770 perm/sec)   p_kst 1.300000e-04   p_cons 7.142767e-01   p_joint 5.633333e-04

Joint ci ratio: 3.060191e-01	ci left: 4.482007e-04	ci right 6.129833e-04	k: 163	n:310000
Cons ci ratio: 4.454207e-03	ci left: 7.125640e-01	ci right 7.157481e-01	k: 221389	n:310000
KS ci ratio: 6.197654e-01	ci left: 8.946217e-05	ci right 1.719776e-04	k: 39	n:310000
MAGEL2   310000 perm   113 sec   (2742 perm/sec)   p_kst 1.258065e-04   p_cons 7.141581e-01   p_joint 5.258065e-04

Joint ci ratio: 3.032591e-01	ci left: 4.428527e-04	ci right 6.039173e-04	k: 166	n:320000
Cons ci ratio: 4.384144e-03	ci left: 7.125811e-01	ci right 7.157151e-01	k: 228528	n:320000
KS ci ratio: 6.048285e-01	ci left: 9.194623e-05	ci right 1.738121e-04	k: 41	n:320000
MAGEL2   320000 perm   118 sec   (2717 perm/sec)   p_kst 1.281250e-04   p_cons 7.141500e-01   p_joint 5.187500e-04

Joint ci ratio: 2.970956e-01	ci left: 4.490481e-04	ci right 6.084212e-04	k: 173	n:330000
Cons ci ratio: 4.317896e-03	ci left: 7.125398e-01	ci right 7.156261e-01	k: 235648	n:330000
KS ci ratio: 5.977545e-01	ci left: 9.172848e-05	ci right 1.720319e-04	k: 42	n:330000
MAGEL2   330000 perm   123 sec   (2692 perm/sec)   p_kst 1.272727e-04   p_cons 7.140848e-01   p_joint 5.242424e-04

Joint ci ratio: 2.962474e-01	ci left: 4.385627e-04	ci right 5.936865e-04	k: 174	n:340000
Cons ci ratio: 4.255727e-03	ci left: 7.123894e-01	ci right 7.154305e-01	k: 242730	n:340000
KS ci ratio: 5.909231e-01	ci left: 9.152886e-05	ci right 1.703513e-04	k: 43	n:340000
MAGEL2   340000 perm   127 sec   (2668 perm/sec)   p_kst 1.264706e-04   p_cons 7.139118e-01   p_joint 5.117647e-04

Joint ci ratio: 2.996962e-01	ci left: 4.154572e-04	ci right 5.644448e-04	k: 170	n:350000
Cons ci ratio: 4.193438e-03	ci left: 7.125140e-01	ci right 7.155110e-01	k: 249905	n:350000
KS ci ratio: 5.909242e-01	ci left: 8.891371e-05	ci right 1.654842e-04	k: 43	n:350000
MAGEL2   350000 perm   132 sec   (2643 perm/sec)   p_kst 1.228571e-04   p_cons 7.140143e-01   p_joint 4.857143e-04

Joint ci ratio: 3.324254e-01	ci left: 3.220564e-04	ci right 4.528724e-04	k: 138	n:360000
Cons ci ratio: 4.256113e-03	ci left: 7.005613e-01	ci right 7.035521e-01	k: 252741	n:360000
KS ci ratio: 5.779347e-01	ci left: 9.117727e-05	ci right 1.672563e-04	k: 45	n:360000
MAGEL2   360000 perm   137 sec   (2619 perm/sec)   p_kst 1.250000e-04   p_cons 7.020583e-01   p_joint 3.833333e-04

Joint ci ratio: 3.437459e-01	ci left: 2.910913e-04	ci right 4.142529e-04	k: 129	n:370000
Cons ci ratio: 4.198302e-03	ci left: 7.005720e-01	ci right 7.035221e-01	k: 259758	n:370000
KS ci ratio: 5.717537e-01	ci left: 9.102242e-05	ci right 1.658278e-04	k: 46	n:370000
MAGEL2   370000 perm   143 sec   (2596 perm/sec)   p_kst 1.243243e-04   p_cons 7.020486e-01   p_joint 3.486486e-04

Joint ci ratio: 3.411325e-01	ci left: 2.882415e-04	ci right 4.090657e-04	k: 131	n:380000
Cons ci ratio: 4.145416e-03	ci left: 7.003163e-01	ci right 7.032280e-01	k: 266674	n:380000
KS ci ratio: 5.717547e-01	ci left: 8.862706e-05	ci right 1.614640e-04	k: 46	n:380000
MAGEL2   380000 perm   148 sec   (2572 perm/sec)   p_kst 1.210526e-04   p_cons 7.017737e-01   p_joint 3.447368e-04

Joint ci ratio: 3.168506e-01	ci left: 3.302570e-04	ci right 4.568468e-04	k: 152	n:390000
Cons ci ratio: 4.092068e-03	ci left: 7.003204e-01	ci right 7.031946e-01	k: 273686	n:390000
KS ci ratio: 5.657677e-01	ci left: 8.854959e-05	ci right 1.602533e-04	k: 47	n:390000
MAGEL2   390000 perm   153 sec   (2547 perm/sec)   p_kst 1.205128e-04   p_cons 7.017590e-01   p_joint 3.897436e-04

Joint ci ratio: 3.108140e-01	ci left: 3.358196e-04	ci right 4.616029e-04	k: 158	n:400000
Cons ci ratio: 4.038943e-03	ci left: 7.005098e-01	ci right 7.033473e-01	k: 280772	n:400000
KS ci ratio: 5.599650e-01	ci left: 8.847981e-05	ci right 1.590995e-04	k: 48	n:400000
MAGEL2   400000 perm   159 sec   (2522 perm/sec)   p_kst 1.200000e-04   p_cons 7.019300e-01   p_joint 3.950000e-04

Joint ci ratio: 3.060390e-01	ci left: 3.388804e-04	ci right 4.634801e-04	k: 163	n:410000
Cons ci ratio: 3.988949e-03	ci left: 7.005729e-01	ci right 7.033754e-01	k: 287810	n:410000
KS ci ratio: 5.488750e-01	ci left: 9.051586e-05	ci right 1.607744e-04	k: 50	n:410000
MAGEL2   410000 perm   164 sec   (2497 perm/sec)   p_kst 1.219512e-04   p_cons 7.019756e-01   p_joint 3.975610e-04

Joint ci ratio: 3.060404e-01	ci left: 3.308116e-04	ci right 4.524452e-04	k: 163	n:420000
Cons ci ratio: 3.938815e-03	ci left: 7.008407e-01	ci right 7.036089e-01	k: 294935	n:420000
KS ci ratio: 5.334095e-01	ci left: 9.452671e-05	ci right 1.650570e-04	k: 53	n:420000
MAGEL2   420000 perm   170 sec   (2473 perm/sec)   p_kst 1.261905e-04   p_cons 7.022262e-01   p_joint 3.880952e-04

Joint ci ratio: 3.041919e-01	ci left: 3.274133e-04	ci right 4.469295e-04	k: 165	n:430000
Cons ci ratio: 3.893682e-03	ci left: 7.007562e-01	ci right 7.034923e-01	k: 301914	n:430000
KS ci ratio: 5.237973e-01	ci left: 9.635845e-05	ci right 1.664853e-04	k: 55	n:430000
MAGEL2   430000 perm   176 sec   (2449 perm/sec)   p_kst 1.279070e-04   p_cons 7.021256e-01   p_joint 3.837209e-04

Joint ci ratio: 3.041933e-01	ci left: 3.199719e-04	ci right 4.367724e-04	k: 165	n:440000
Cons ci ratio: 3.848957e-03	ci left: 7.007963e-01	ci right 7.035011e-01	k: 308946	n:440000
KS ci ratio: 5.103057e-01	ci left: 1.000965e-04	ci right 1.704023e-04	k: 58	n:440000
MAGEL2   440000 perm   181 sec   (2426 perm/sec)   p_kst 1.318182e-04   p_cons 7.021500e-01   p_joint 3.750000e-04

Joint ci ratio: 1.994369e-01	ci left: 7.722501e-04	ci right 9.453918e-04	k: 385	n:450000
Cons ci ratio: 3.805475e-03	ci left: 7.008637e-01	ci right 7.035381e-01	k: 315991	n:450000
KS ci ratio: 5.018700e-01	ci left: 1.017489e-04	ci right 1.716231e-04	k: 60	n:450000
MAGEL2   450000 perm   187 sec   (2403 perm/sec)   p_kst 1.333333e-04   p_cons 7.022022e-01   p_joint 8.555556e-04

Joint ci ratio: 1.961601e-01	ci left: 7.823239e-04	ci right 9.544979e-04	k: 398	n:460000
Cons ci ratio: 3.763141e-03	ci left: 7.009610e-01	ci right 7.036060e-01	k: 323051	n:460000
KS ci ratio: 4.938392e-01	ci left: 1.033386e-04	ci right 1.727819e-04	k: 62	n:460000
MAGEL2   460000 perm   193 sec   (2381 perm/sec)   p_kst 1.347826e-04   p_cons 7.022848e-01   p_joint 8.652174e-04

Joint ci ratio: 1.944621e-01	ci left: 7.798439e-04	ci right 9.498105e-04	k: 405	n:470000
Cons ci ratio: 3.723231e-03	ci left: 7.009372e-01	ci right 7.035539e-01	k: 330056	n:470000
KS ci ratio: 4.899661e-01	ci left: 1.030035e-04	ci right 1.714954e-04	k: 63	n:470000
MAGEL2   470000 perm   199 sec   (2359 perm/sec)   p_kst 1.340426e-04   p_cons 7.022468e-01   p_joint 8.617021e-04

Joint ci ratio: 1.921103e-01	ci left: 7.834225e-04	ci right 9.518629e-04	k: 415	n:480000
Cons ci ratio: 3.684490e-03	ci left: 7.009229e-01	ci right 7.035122e-01	k: 337065	n:480000
KS ci ratio: 4.788703e-01	ci left: 1.063440e-04	ci right 1.749304e-04	k: 66	n:480000
MAGEL2   480000 perm   205 sec   (2338 perm/sec)   p_kst 1.375000e-04   p_cons 7.022188e-01   p_joint 8.645833e-04

Joint ci ratio: 1.914224e-01	ci left: 7.732624e-04	ci right 9.388537e-04	k: 418	n:490000
Cons ci ratio: 3.646739e-03	ci left: 7.009317e-01	ci right 7.034945e-01	k: 344085	n:490000
KS ci ratio: 4.788710e-01	ci left: 1.041737e-04	ci right 1.713605e-04	k: 66	n:490000
MAGEL2   490000 perm   211 sec   (2317 perm/sec)   p_kst 1.346939e-04   p_cons 7.022143e-01   p_joint 8.530612e-04

Joint ci ratio: 1.898435e-01	ci left: 7.711289e-04	ci right 9.347441e-04	k: 425	n:500000
Cons ci ratio: 3.610487e-03	ci left: 7.008983e-01	ci right 7.034354e-01	k: 351084	n:500000
KS ci ratio: 4.753370e-01	ci left: 1.038496e-04	ci right 1.701722e-04	k: 67	n:500000
MAGEL2   500000 perm   218 sec   (2297 perm/sec)   p_kst 1.340000e-04   p_cons 7.021680e-01   p_joint 8.500000e-04

Joint ci ratio: 1.876535e-01	ci left: 7.746902e-04	ci right 9.369489e-04	k: 435	n:510000
Cons ci ratio: 3.575647e-03	ci left: 7.008250e-01	ci right 7.033374e-01	k: 358062	n:510000
KS ci ratio: 4.718802e-01	ci left: 1.035400e-04	ci right 1.690288e-04	k: 68	n:510000
MAGEL2   510000 perm   224 sec   (2278 perm/sec)   p_kst 1.333333e-04   p_cons 7.020824e-01   p_joint 8.529412e-04

Joint ci ratio: 1.867994e-01	ci left: 7.671238e-04	ci right 9.269835e-04	k: 439	n:520000
Cons ci ratio: 3.542594e-03	ci left: 7.006604e-01	ci right 7.031489e-01	k: 364991	n:520000
KS ci ratio: 4.651862e-01	ci left: 1.049408e-04	ci right 1.700754e-04	k: 70	n:520000
MAGEL2   520000 perm   230 sec   (2259 perm/sec)   p_kst 1.346154e-04   p_cons 7.019058e-01   p_joint 8.442308e-04

Joint ci ratio: 1.857476e-01	ci left: 7.616437e-04	ci right 9.193669e-04	k: 444	n:530000
Cons ci ratio: 3.510027e-03	ci left: 7.005512e-01	ci right 7.030164e-01	k: 371946	n:530000
KS ci ratio: 4.556585e-01	ci left: 1.079644e-04	ci right 1.731791e-04	k: 73	n:530000
MAGEL2   530000 perm   237 sec   (2239 perm/sec)   p_kst 1.377358e-04   p_cons 7.017849e-01   p_joint 8.377358e-04

Joint ci ratio: 1.841002e-01	ci left: 7.616682e-04	ci right 9.178414e-04	k: 452	n:540000
Cons ci ratio: 3.476004e-03	ci left: 7.007280e-01	ci right 7.031698e-01	k: 379053	n:540000
KS ci ratio: 4.496228e-01	ci left: 1.092464e-04	ci right 1.740954e-04	k: 75	n:540000
MAGEL2   540000 perm   243 sec   (2220 perm/sec)   p_kst 1.388889e-04   p_cons 7.019500e-01   p_joint 8.370370e-04

Joint ci ratio: 1.851270e-01	ci left: 7.391481e-04	ci right 8.916439e-04	k: 447	n:550000
Cons ci ratio: 3.444970e-03	ci left: 7.006527e-01	ci right 7.030724e-01	k: 386025	n:550000
KS ci ratio: 4.496234e-01	ci left: 1.072601e-04	ci right 1.709300e-04	k: 75	n:550000
MAGEL2   550000 perm   250 sec   (2201 perm/sec)   p_kst 1.363636e-04   p_cons 7.018636e-01   p_joint 8.127273e-04

Joint ci ratio: 2.094671e-01	ci left: 5.595548e-04	ci right 6.921285e-04	k: 349	n:560000
Cons ci ratio: 3.605565e-03	ci left: 6.773089e-01	ci right 6.797571e-01	k: 379979	n:560000
KS ci ratio: 4.438213e-01	ci left: 1.085143e-04	ci right 1.718485e-04	k: 77	n:560000
MAGEL2   560000 perm   257 sec   (2183 perm/sec)   p_kst 1.375000e-04   p_cons 6.785339e-01   p_joint 6.232143e-04

Joint ci ratio: 2.112883e-01	ci left: 5.397657e-04	ci right 6.689067e-04	k: 343	n:570000
Cons ci ratio: 3.574205e-03	ci left: 6.772699e-01	ci right 6.796967e-01	k: 386736	n:570000
KS ci ratio: 4.410035e-01	ci left: 1.081695e-04	ci right 1.707822e-04	k: 78	n:570000
MAGEL2   570000 perm   263 sec   (2165 perm/sec)   p_kst 1.368421e-04   p_cons 6.784842e-01   p_joint 6.017544e-04

Joint ci ratio: 2.094694e-01	ci left: 5.402593e-04	ci right 6.682628e-04	k: 349	n:580000
Cons ci ratio: 3.542458e-03	ci left: 6.773791e-01	ci right 6.797846e-01	k: 393578	n:580000
KS ci ratio: 4.410040e-01	ci left: 1.063044e-04	ci right 1.678378e-04	k: 78	n:580000
MAGEL2   580000 perm   270 sec   (2147 perm/sec)   p_kst 1.344828e-04   p_cons 6.785828e-01   p_joint 6.017241e-04

Joint ci ratio: 2.157284e-01	ci left: 4.990072e-04	ci right 6.212379e-04	k: 329	n:590000
Cons ci ratio: 3.514272e-03	ci left: 6.771453e-01	ci right 6.795309e-01	k: 400220	n:590000
KS ci ratio: 4.355253e-01	ci left: 1.075184e-04	ci right 1.687547e-04	k: 80	n:590000
MAGEL2   590000 perm   277 sec   (2130 perm/sec)   p_kst 1.355932e-04   p_cons 6.783390e-01   p_joint 5.576271e-04

Joint ci ratio: 2.160572e-01	ci left: 4.891136e-04	ci right 6.091276e-04	k: 328	n:600000
Cons ci ratio: 3.483551e-03	ci left: 6.773199e-01	ci right 6.796851e-01	k: 407102	n:600000
KS ci ratio: 4.328616e-01	ci left: 1.072109e-04	ci right 1.677899e-04	k: 81	n:600000
MAGEL2   600000 perm   284 sec   (2113 perm/sec)   p_kst 1.350000e-04   p_cons 6.785033e-01   p_joint 5.466667e-04

Joint ci ratio: 2.141135e-01	ci left: 4.904017e-04	ci right 6.095070e-04	k: 334	n:610000
Cons ci ratio: 3.455062e-03	ci left: 6.773066e-01	ci right 6.796524e-01	k: 413873	n:610000
KS ci ratio: 4.328621e-01	ci left: 1.054533e-04	ci right 1.650393e-04	k: 81	n:610000
MAGEL2   610000 perm   291 sec   (2096 perm/sec)   p_kst 1.327869e-04   p_cons 6.784803e-01   p_joint 5.475410e-04

Joint ci ratio: 2.134778e-01	ci left: 4.855449e-04	ci right 6.030747e-04	k: 336	n:620000
Cons ci ratio: 3.426513e-03	ci left: 6.773891e-01	ci right 6.797157e-01	k: 420703	n:620000
KS ci ratio: 4.328626e-01	ci left: 1.037524e-04	ci right 1.623774e-04	k: 81	n:620000
MAGEL2   620000 perm   298 sec   (2080 perm/sec)   p_kst 1.306452e-04   p_cons 6.785532e-01   p_joint 5.419355e-04

Joint ci ratio: 2.122223e-01	ci left: 4.838486e-04	ci right 6.001893e-04	k: 340	n:630000
Cons ci ratio: 3.398152e-03	ci left: 6.775342e-01	ci right 6.798420e-01	k: 427574	n:630000
KS ci ratio: 4.328631e-01	ci left: 1.021055e-04	ci right 1.598001e-04	k: 81	n:630000
MAGEL2   630000 perm   305 sec   (2065 perm/sec)   p_kst 1.285714e-04   p_cons 6.786889e-01   p_joint 5.396825e-04

Joint ci ratio: 2.116032e-01	ci left: 4.792475e-04	ci right 5.941021e-04	k: 342	n:640000
Cons ci ratio: 3.371402e-03	ci left: 6.775559e-01	ci right 6.798456e-01	k: 434369	n:640000
KS ci ratio: 4.276787e-01	ci left: 1.032967e-04	ci right 1.607647e-04	k: 83	n:640000
MAGEL2   640000 perm   312 sec   (2050 perm/sec)   p_kst 1.296875e-04   p_cons 6.787016e-01   p_joint 5.343750e-04

Joint ci ratio: 2.137981e-01	ci left: 4.616784e-04	ci right 5.736207e-04	k: 335	n:650000
Cons ci ratio: 3.345415e-03	ci left: 6.775586e-01	ci right 6.798306e-01	k: 441152	n:650000
KS ci ratio: 4.251556e-01	ci left: 1.030808e-04	ci right 1.599940e-04	k: 84	n:650000
MAGEL2   650000 perm   320 sec   (2034 perm/sec)   p_kst 1.292308e-04   p_cons 6.786954e-01   p_joint 5.153846e-04

Joint ci ratio: 2.122249e-01	ci left: 4.618549e-04	ci right 5.729088e-04	k: 340	n:660000
Cons ci ratio: 3.320839e-03	ci left: 6.774536e-01	ci right 6.797085e-01	k: 447864	n:660000
KS ci ratio: 4.226766e-01	ci left: 1.028724e-04	ci right 1.592458e-04	k: 85	n:660000
MAGEL2   660000 perm   327 sec   (2020 perm/sec)   p_kst 1.287879e-04   p_cons 6.785818e-01   p_joint 5.151515e-04

Joint ci ratio: 2.097780e-01	ci left: 4.662710e-04	ci right 5.769280e-04	k: 348	n:670000
Cons ci ratio: 3.296502e-03	ci left: 6.773906e-01	ci right 6.796288e-01	k: 454602	n:670000
KS ci ratio: 4.131762e-01	ci left: 1.066794e-04	ci right 1.634634e-04	k: 89	n:670000
MAGEL2   670000 perm   334 sec   (2006 perm/sec)   p_kst 1.328358e-04   p_cons 6.785104e-01   p_joint 5.194030e-04

Joint ci ratio: 2.100801e-01	ci left: 4.580206e-04	ci right 5.668963e-04	k: 347	n:680000
Cons ci ratio: 3.271579e-03	ci left: 6.774782e-01	ci right 6.796997e-01	k: 461441	n:680000
KS ci ratio: 4.108999e-01	ci left: 1.064287e-04	ci right 1.626818e-04	k: 90	n:680000
MAGEL2   680000 perm   341 sec   (1992 perm/sec)   p_kst 1.323529e-04   p_cons 6.785897e-01   p_joint 5.102941e-04

Joint ci ratio: 2.085870e-01	ci left: 4.582492e-04	ci right 5.663061e-04	k: 352	n:690000
Cons ci ratio: 3.248227e-03	ci left: 6.774270e-01	ci right 6.796324e-01	k: 468186	n:690000
KS ci ratio: 4.086607e-01	ci left: 1.061861e-04	ci right 1.619220e-04	k: 91	n:690000
MAGEL2   690000 perm   349 sec   (1978 perm/sec)   p_kst 1.318841e-04   p_cons 6.785304e-01   p_joint 5.101449e-04

Joint ci ratio: 2.068365e-01	ci left: 4.598284e-04	ci right 5.672326e-04	k: 358	n:700000
Cons ci ratio: 3.224966e-03	ci left: 6.774316e-01	ci right 6.796212e-01	k: 474969	n:700000
KS ci ratio: 4.086611e-01	ci left: 1.046691e-04	ci right 1.596088e-04	k: 91	n:700000
MAGEL2   700000 perm   357 sec   (1963 perm/sec)   p_kst 1.300000e-04   p_cons 6.785271e-01   p_joint 5.114286e-04

Joint ci ratio: 2.051293e-01	ci left: 4.613668e-04	ci right 5.681294e-04	k: 364	n:710000
Cons ci ratio: 3.202115e-03	ci left: 6.774474e-01	ci right 6.796215e-01	k: 481760	n:710000
KS ci ratio: 4.021563e-01	ci left: 1.069894e-04	ci right 1.620148e-04	k: 94	n:710000
MAGEL2   710000 perm   364 sec   (1949 perm/sec)   p_kst 1.323944e-04   p_cons 6.785352e-01   p_joint 5.126761e-04

Joint ci ratio: 2.029172e-01	ci left: 4.655025e-04	ci right 5.719165e-04	k: 372	n:720000
Cons ci ratio: 3.179329e-03	ci left: 6.775199e-01	ci right 6.796787e-01	k: 488592	n:720000
KS ci ratio: 3.959526e-01	ci left: 1.092520e-04	ci right 1.643473e-04	k: 97	n:720000
MAGEL2   720000 perm   372 sec   (1934 perm/sec)   p_kst 1.347222e-04   p_cons 6.786000e-01   p_joint 5.166667e-04

Joint ci ratio: 2.018380e-01	ci left: 4.643275e-04	ci right 5.698388e-04	k: 376	n:730000
Cons ci ratio: 3.157289e-03	ci left: 6.775533e-01	ci right 6.796973e-01	k: 495397	n:730000
KS ci ratio: 3.939478e-01	ci left: 1.089892e-04	ci right 1.636012e-04	k: 98	n:730000
MAGEL2   730000 perm   380 sec   (1920 perm/sec)   p_kst 1.342466e-04   p_cons 6.786260e-01   p_joint 5.150685e-04

Joint ci ratio: 1.997296e-01	ci left: 4.683203e-04	ci right 5.734918e-04	k: 384	n:740000
Cons ci ratio: 3.135808e-03	ci left: 6.775711e-01	ci right 6.797005e-01	k: 502191	n:740000
KS ci ratio: 3.900277e-01	ci left: 1.099526e-04	ci right 1.643581e-04	k: 100	n:740000
MAGEL2   740000 perm   388 sec   (1906 perm/sec)   p_kst 1.351351e-04   p_cons 6.786365e-01   p_joint 5.189189e-04

Joint ci ratio: 1.987002e-01	ci left: 4.671433e-04	ci right 5.714443e-04	k: 388	n:750000
Cons ci ratio: 3.115217e-03	ci left: 6.775244e-01	ci right 6.796396e-01	k: 508937	n:750000
KS ci ratio: 3.881112e-01	ci left: 1.096895e-04	ci right 1.636298e-04	k: 101	n:750000
MAGEL2   750000 perm   396 sec   (1892 perm/sec)   p_kst 1.346667e-04   p_cons 6.785827e-01   p_joint 5.173333e-04

Joint ci ratio: 1.969360e-01	ci left: 4.697511e-04	ci right 5.735913e-04	k: 395	n:760000
Cons ci ratio: 3.095287e-03	ci left: 6.774420e-01	ci right 6.795434e-01	k: 515655	n:760000
KS ci ratio: 3.862226e-01	ci left: 1.094339e-04	ci right 1.629201e-04	k: 102	n:760000
MAGEL2   760000 perm   405 sec   (1879 perm/sec)   p_kst 1.342105e-04   p_cons 6.784934e-01   p_joint 5.197368e-04

Joint ci ratio: 1.964409e-01	ci left: 4.661198e-04	ci right 5.688673e-04	k: 397	n:770000
Cons ci ratio: 3.075314e-03	ci left: 6.774217e-01	ci right 6.795094e-01	k: 522419	n:770000
KS ci ratio: 3.862230e-01	ci left: 1.080127e-04	ci right 1.608043e-04	k: 102	n:770000
MAGEL2   770000 perm   413 sec   (1865 perm/sec)   p_kst 1.324675e-04   p_cons 6.784662e-01   p_joint 5.155844e-04

Joint ci ratio: 1.952185e-01	ci left: 4.662399e-04	ci right 5.682983e-04	k: 402	n:780000
Cons ci ratio: 3.055642e-03	ci left: 6.774134e-01	ci right 6.794878e-01	k: 529192	n:780000
KS ci ratio: 3.825268e-01	ci left: 1.089443e-04	ci right 1.615534e-04	k: 104	n:780000
MAGEL2   780000 perm   421 sec   (1853 perm/sec)   p_kst 1.333333e-04   p_cons 6.784513e-01   p_joint 5.153846e-04

Joint ci ratio: 1.947363e-01	ci left: 4.627461e-04	ci right 5.637599e-04	k: 404	n:790000
Cons ci ratio: 3.036448e-03	ci left: 6.773903e-01	ci right 6.794515e-01	k: 535953	n:790000
KS ci ratio: 3.825272e-01	ci left: 1.075652e-04	ci right 1.595084e-04	k: 104	n:790000
MAGEL2   790000 perm   429 sec   (1840 perm/sec)   p_kst 1.316456e-04   p_cons 6.784215e-01   p_joint 5.113924e-04

Joint ci ratio: 1.935453e-01	ci left: 4.629080e-04	ci right 5.632663e-04	k: 409	n:800000
Cons ci ratio: 3.017023e-03	ci left: 6.774528e-01	ci right 6.795010e-01	k: 542782	n:800000
KS ci ratio: 3.807186e-01	ci left: 1.073507e-04	ci right 1.588839e-04	k: 105	n:800000
MAGEL2   800000 perm   438 sec   (1827 perm/sec)   p_kst 1.312500e-04   p_cons 6.784775e-01   p_joint 5.112500e-04

Joint ci ratio: 1.933102e-01	ci left: 4.583678e-04	ci right 5.576068e-04	k: 410	n:810000
Cons ci ratio: 2.998934e-03	ci left: 6.773729e-01	ci right 6.794085e-01	k: 549497	n:810000
KS ci ratio: 3.789354e-01	ci left: 1.071421e-04	ci right 1.582743e-04	k: 106	n:810000
MAGEL2   810000 perm   446 sec   (1814 perm/sec)   p_kst 1.308642e-04   p_cons 6.783914e-01   p_joint 5.061728e-04

Joint ci ratio: 1.919143e-01	ci left: 4.597422e-04	ci right 5.584762e-04	k: 416	n:820000
Cons ci ratio: 2.980383e-03	ci left: 6.774098e-01	ci right 6.794329e-01	k: 556306	n:820000
KS ci ratio: 3.771771e-01	ci left: 1.069391e-04	ci right 1.576790e-04	k: 107	n:820000
MAGEL2   820000 perm   455 sec   (1802 perm/sec)   p_kst 1.304878e-04   p_cons 6.784220e-01   p_joint 5.073171e-04

Joint ci ratio: 1.673987e-01	ci left: 6.049734e-04	ci right 7.166315e-04	k: 547	n:830000
Cons ci ratio: 2.962196e-03	ci left: 6.774421e-01	ci right 6.794530e-01	k: 563112	n:830000
KS ci ratio: 3.754430e-01	ci left: 1.067415e-04	ci right 1.570975e-04	k: 108	n:830000
MAGEL2   830000 perm   464 sec   (1789 perm/sec)   p_kst 1.301205e-04   p_cons 6.784482e-01   p_joint 6.590361e-04

Joint ci ratio: 1.681688e-01	ci left: 5.920686e-04	ci right 7.018985e-04	k: 542	n:840000
Cons ci ratio: 2.944427e-03	ci left: 6.774607e-01	ci right 6.794595e-01	k: 569907	n:840000
KS ci ratio: 3.720451e-01	ci left: 1.076281e-04	ci right 1.578309e-04	k: 110	n:840000
MAGEL2   840000 perm   473 sec   (1777 perm/sec)   p_kst 1.309524e-04   p_cons 6.784607e-01   p_joint 6.452381e-04

Joint ci ratio: 1.670952e-01	ci left: 5.929929e-04	ci right 7.022213e-04	k: 549	n:850000
Cons ci ratio: 2.927297e-03	ci left: 6.774306e-01	ci right 6.794176e-01	k: 576661	n:850000
KS ci ratio: 3.720454e-01	ci left: 1.063619e-04	ci right 1.559741e-04	k: 110	n:850000
MAGEL2   850000 perm   482 sec   (1764 perm/sec)   p_kst 1.294118e-04   p_cons 6.784247e-01   p_joint 6.458824e-04

Joint ci ratio: 1.964463e-01	ci left: 4.173388e-04	ci right 5.093361e-04	k: 397	n:860000
Cons ci ratio: 2.910276e-03	ci left: 6.774291e-01	ci right 6.794046e-01	k: 583439	n:860000
KS ci ratio: 3.687381e-01	ci left: 1.072343e-04	ci right 1.567015e-04	k: 112	n:860000
MAGEL2   860000 perm   491 sec   (1752 perm/sec)   p_kst 1.302326e-04   p_cons 6.784174e-01   p_joint 4.616279e-04

Joint ci ratio: 1.957102e-01	ci left: 4.158207e-04	ci right 5.070991e-04	k: 400	n:870000
Cons ci ratio: 2.893626e-03	ci left: 6.774162e-01	ci right 6.793803e-01	k: 590207	n:870000
KS ci ratio: 3.687384e-01	ci left: 1.060017e-04	ci right 1.549004e-04	k: 112	n:870000
MAGEL2   870000 perm   500 sec   (1740 perm/sec)   p_kst 1.287356e-04   p_cons 6.783989e-01   p_joint 4.597701e-04

Joint ci ratio: 2.031995e-01	ci left: 3.797854e-04	ci right 4.667400e-04	k: 371	n:880000
Cons ci ratio: 2.877175e-03	ci left: 6.774161e-01	ci right 6.793691e-01	k: 596986	n:880000
KS ci ratio: 3.671176e-01	ci left: 1.058284e-04	ci right 1.543811e-04	k: 113	n:880000
MAGEL2   880000 perm   509 sec   (1729 perm/sec)   p_kst 1.284091e-04   p_cons 6.783932e-01   p_joint 4.215909e-04

Joint ci ratio: 2.013139e-01	ci left: 3.829850e-04	ci right 4.697586e-04	k: 378	n:890000
Cons ci ratio: 2.860486e-03	ci left: 6.774948e-01	ci right 6.794366e-01	k: 603835	n:890000
KS ci ratio: 3.623801e-01	ci left: 1.077012e-04	ci right 1.563249e-04	k: 116	n:890000
MAGEL2   890000 perm   518 sec   (1717 perm/sec)   p_kst 1.303371e-04   p_cons 6.784663e-01   p_joint 4.247191e-04

Joint ci ratio: 2.007851e-01	ci left: 3.808400e-04	ci right 4.668731e-04	k: 380	n:900000
Cons ci ratio: 2.844106e-03	ci left: 6.775684e-01	ci right 6.794993e-01	k: 610681	n:900000
KS ci ratio: 3.593219e-01	ci left: 1.085253e-04	ci right 1.570108e-04	k: 118	n:900000
MAGEL2   900000 perm   528 sec   (1706 perm/sec)   p_kst 1.311111e-04   p_cons 6.785344e-01   p_joint 4.222222e-04

Joint ci ratio: 1.994803e-01	ci left: 3.818741e-04	ci right 4.675120e-04	k: 385	n:910000
Cons ci ratio: 2.829144e-03	ci left: 6.774645e-01	ci right 6.793849e-01	k: 617367	n:910000
KS ci ratio: 3.563397e-01	ci left: 1.093330e-04	ci right 1.576799e-04	k: 120	n:910000
MAGEL2   910000 perm   537 sec   (1695 perm/sec)   p_kst 1.318681e-04   p_cons 6.784253e-01   p_joint 4.230769e-04

Joint ci ratio: 1.982007e-01	ci left: 3.828875e-04	ci right 4.681354e-04	k: 390	n:920000
Cons ci ratio: 2.814141e-03	ci left: 6.774053e-01	ci right 6.793153e-01	k: 624092	n:920000
KS ci ratio: 3.534307e-01	ci left: 1.101247e-04	ci right 1.583329e-04	k: 122	n:920000
MAGEL2   920000 perm   546 sec   (1684 perm/sec)   p_kst 1.326087e-04   p_cons 6.783609e-01   p_joint 4.239130e-04

Joint ci ratio: 1.974448e-01	ci left: 3.818365e-04	ci right 4.664871e-04	k: 393	n:930000
Cons ci ratio: 2.798961e-03	ci left: 6.774119e-01	ci right 6.793117e-01	k: 630877	n:930000
KS ci ratio: 3.478198e-01	ci left: 1.128629e-04	ci right 1.613087e-04	k: 126	n:930000
MAGEL2   930000 perm   556 sec   (1673 perm/sec)   p_kst 1.354839e-04   p_cons 6.783624e-01   p_joint 4.225806e-04

Joint ci ratio: 1.989667e-01	ci left: 3.717080e-04	ci right 4.548254e-04	k: 387	n:940000
Cons ci ratio: 2.784635e-03	ci left: 6.773227e-01	ci right 6.792124e-01	k: 637572	n:940000
KS ci ratio: 3.478201e-01	ci left: 1.116622e-04	ci right 1.595927e-04	k: 126	n:940000
MAGEL2   940000 perm   565 sec   (1664 perm/sec)   p_kst 1.340426e-04   p_cons 6.782681e-01   p_joint 4.117021e-04

Joint ci ratio: 1.974457e-01	ci left: 3.737977e-04	ci right 4.566665e-04	k: 393	n:950000
Cons ci ratio: 2.769904e-03	ci left: 6.773333e-01	ci right 6.792130e-01	k: 644360	n:950000
KS ci ratio: 3.451131e-01	ci left: 1.124089e-04	ci right 1.602005e-04	k: 128	n:950000
MAGEL2   950000 perm   575 sec   (1653 perm/sec)   p_kst 1.347368e-04   p_cons 6.782737e-01   p_joint 4.136842e-04

Joint ci ratio: 1.966984e-01	ci left: 3.728747e-04	ci right 4.551886e-04	k: 396	n:960000
Cons ci ratio: 2.755636e-03	ci left: 6.773072e-01	ci right 6.791772e-01	k: 651113	n:960000
KS ci ratio: 3.451134e-01	ci left: 1.112380e-04	ci right 1.585318e-04	k: 128	n:960000
MAGEL2   960000 perm   584 sec   (1643 perm/sec)   p_kst 1.333333e-04   p_cons 6.782427e-01   p_joint 4.125000e-04

Joint ci ratio: 1.954712e-01	ci left: 3.739323e-04	ci right 4.559033e-04	k: 401	n:970000
Cons ci ratio: 2.741268e-03	ci left: 6.773322e-01	ci right 6.791925e-01	k: 657915	n:970000
KS ci ratio: 3.411688e-01	ci left: 1.129175e-04	ci right 1.602557e-04	k: 131	n:970000
MAGEL2   970000 perm   594 sec   (1633 perm/sec)   p_kst 1.350515e-04   p_cons 6.782629e-01   p_joint 4.134021e-04

Joint ci ratio: 1.945059e-01	ci left: 3.739990e-04	ci right 4.555318e-04	k: 405	n:980000
Cons ci ratio: 2.727161e-03	ci left: 6.773506e-01	ci right 6.792014e-01	k: 664711	n:980000
KS ci ratio: 3.398839e-01	ci left: 1.126984e-04	ci right 1.597278e-04	k: 132	n:980000
MAGEL2   980000 perm   604 sec   (1623 perm/sec)   p_kst 1.346939e-04   p_cons 6.782765e-01   p_joint 4.132653e-04

Joint ci ratio: 2.029316e-01	ci left: 3.385450e-04	ci right 4.159424e-04	k: 372	n:990000
Cons ci ratio: 2.713062e-03	ci left: 6.774021e-01	ci right 6.792434e-01	k: 671540	n:990000
KS ci ratio: 3.361140e-01	ci left: 1.143332e-04	ci right 1.614008e-04	k: 135	n:990000
MAGEL2   990000 perm   613 sec   (1614 perm/sec)   p_kst 1.363636e-04   p_cons 6.783232e-01   p_joint 3.757576e-04

Joint ci ratio: 2.043064e-01	ci left: 3.304143e-04	ci right 4.065286e-04	k: 367	n:1000000
Cons ci ratio: 2.699322e-03	ci left: 6.774295e-01	ci right 6.792615e-01	k: 678346	n:1000000
KS ci ratio: 3.348851e-01	ci left: 1.141057e-04	ci right 1.608708e-04	k: 136	n:1000000
MAGEL2   1000000 perm   623 sec   (1604 perm/sec)   p_kst 1.360000e-04   p_cons 6.783460e-01   p_joint 3.670000e-04

Joint ci ratio: 2.034788e-01	ci left: 3.299615e-04	ci right 4.056253e-04	k: 370	n:1010000
Cons ci ratio: 2.685288e-03	ci left: 6.775376e-01	ci right 6.793604e-01	k: 685234	n:1010000
KS ci ratio: 3.348853e-01	ci left: 1.129759e-04	ci right 1.592780e-04	k: 136	n:1010000
MAGEL2   1010000 perm   633 sec   (1595 perm/sec)   p_kst 1.346535e-04   p_cons 6.784495e-01   p_joint 3.663366e-04

Joint ci ratio: 2.032054e-01	ci left: 3.276570e-04	ci right 4.026789e-04	k: 371	n:1020000
Cons ci ratio: 2.672204e-03	ci left: 6.775239e-01	ci right 6.793378e-01	k: 692000	n:1020000
KS ci ratio: 3.348855e-01	ci left: 1.118683e-04	ci right 1.577165e-04	k: 136	n:1020000
MAGEL2   1020000 perm   644 sec   (1584 perm/sec)   p_kst 1.333333e-04   p_cons 6.784314e-01   p_joint 3.637255e-04

Joint ci ratio: 2.015859e-01	ci left: 3.300060e-04	ci right 4.048894e-04	k: 377	n:1030000
Cons ci ratio: 2.659202e-03	ci left: 6.775281e-01	ci right 6.793331e-01	k: 698784	n:1030000
KS ci ratio: 3.348858e-01	ci left: 1.107822e-04	ci right 1.561853e-04	k: 136	n:1030000
MAGEL2   1030000 perm   654 sec   (1575 perm/sec)   p_kst 1.320388e-04   p_cons 6.784311e-01   p_joint 3.660194e-04

Joint ci ratio: 2.010549e-01	ci left: 3.286590e-04	ci right 4.030162e-04	k: 379	n:1040000
Cons ci ratio: 2.646272e-03	ci left: 6.775514e-01	ci right 6.793476e-01	k: 705588	n:1040000
KS ci ratio: 3.336703e-01	ci left: 1.105978e-04	ci right 1.557254e-04	k: 137	n:1040000
MAGEL2   1040000 perm   664 sec   (1566 perm/sec)   p_kst 1.317308e-04   p_cons 6.784500e-01   p_joint 3.644231e-04

Joint ci ratio: 2.007911e-01	ci left: 3.264333e-04	ci right 4.001782e-04	k: 380	n:1050000
Cons ci ratio: 2.633678e-03	ci left: 6.775495e-01	ci right 6.793372e-01	k: 712366	n:1050000
KS ci ratio: 3.336705e-01	ci left: 1.095445e-04	ci right 1.542424e-04	k: 137	n:1050000
MAGEL2   1050000 perm   674 sec   (1558 perm/sec)   p_kst 1.304762e-04   p_cons 6.784438e-01   p_joint 3.619048e-04

Joint ci ratio: 1.593251e-01	ci left: 5.252805e-04	ci right 6.171069e-04	k: 604	n:1060000
Cons ci ratio: 2.621488e-03	ci left: 6.775098e-01	ci right 6.792892e-01	k: 719104	n:1060000
KS ci ratio: 3.312784e-01	ci left: 1.102403e-04	ci right 1.548310e-04	k: 139	n:1060000
MAGEL2   1060000 perm   685 sec   (1548 perm/sec)   p_kst 1.311321e-04   p_cons 6.784000e-01   p_joint 5.698113e-04

Joint ci ratio: 1.589317e-01	ci left: 5.230633e-04	ci right 6.142549e-04	k: 607	n:1070000
Cons ci ratio: 2.609076e-03	ci left: 6.775365e-01	ci right 6.793074e-01	k: 725912	n:1070000
KS ci ratio: 3.301016e-01	ci left: 1.100670e-04	ci right 1.543958e-04	k: 140	n:1070000
MAGEL2   1070000 perm   696 sec   (1538 perm/sec)   p_kst 1.308411e-04   p_cons 6.784224e-01   p_joint 5.672897e-04

Joint ci ratio: 1.595901e-01	ci left: 5.137748e-04	ci right 6.037536e-04	k: 602	n:1080000
Cons ci ratio: 2.596815e-03	ci left: 6.775663e-01	ci right 6.793290e-01	k: 732724	n:1080000
KS ci ratio: 3.301018e-01	ci left: 1.090479e-04	ci right 1.529663e-04	k: 140	n:1080000
MAGEL2   1080000 perm   706 sec   (1529 perm/sec)   p_kst 1.296296e-04   p_cons 6.784481e-01   p_joint 5.574074e-04

Joint ci ratio: 1.606604e-01	ci left: 5.020157e-04	ci right 5.905816e-04	k: 594	n:1090000
Cons ci ratio: 2.516210e-03	ci left: 6.892116e-01	ci right 6.909489e-01	k: 752188	n:1090000
KS ci ratio: 3.301020e-01	ci left: 1.080474e-04	ci right 1.515629e-04	k: 140	n:1090000
MAGEL2   1090000 perm   717 sec   (1520 perm/sec)   p_kst 1.284404e-04   p_cons 6.900807e-01   p_joint 5.449541e-04

Joint ci ratio: 1.595909e-01	ci left: 5.044333e-04	ci right 5.927765e-04	k: 602	n:1100000
Cons ci ratio: 2.504868e-03	ci left: 6.891948e-01	ci right 6.909242e-01	k: 759066	n:1100000
KS ci ratio: 3.255167e-01	ci left: 1.104024e-04	ci right 1.541196e-04	k: 144	n:1100000
MAGEL2   1100000 perm   728 sec   (1510 perm/sec)   p_kst 1.309091e-04   p_cons 6.900600e-01   p_joint 5.472727e-04

Joint ci ratio: 1.598568e-01	ci left: 4.981589e-04	ci right 5.855626e-04	k: 600	n:1110000
Cons ci ratio: 2.493447e-03	ci left: 6.892180e-01	ci right 6.909396e-01	k: 765988	n:1110000
KS ci ratio: 3.255169e-01	ci left: 1.094077e-04	ci right 1.527311e-04	k: 144	n:1110000
MAGEL2   1110000 perm   739 sec   (1502 perm/sec)   p_kst 1.297297e-04   p_cons 6.900793e-01   p_joint 5.405405e-04

Joint ci ratio: 1.586729e-01	ci left: 5.014266e-04	ci right 5.886900e-04	k: 609	n:1120000
Cons ci ratio: 2.482321e-03	ci left: 6.892167e-01	ci right 6.909305e-01	k: 772883	n:1120000
KS ci ratio: 3.232948e-01	ci left: 1.100712e-04	ci right 1.532981e-04	k: 146	n:1120000
MAGEL2   1120000 perm   750 sec   (1493 perm/sec)   p_kst 1.303571e-04   p_cons 6.900741e-01   p_joint 5.437500e-04

Joint ci ratio: 1.577701e-01	ci left: 5.029387e-04	ci right 5.899201e-04	k: 616	n:1130000
Cons ci ratio: 2.470785e-03	ci left: 6.893119e-01	ci right 6.910181e-01	k: 779887	n:1130000
KS ci ratio: 3.222008e-01	ci left: 1.099104e-04	ci right 1.528979e-04	k: 147	n:1130000
MAGEL2   1130000 perm   761 sec   (1486 perm/sec)   p_kst 1.300885e-04   p_cons 6.901655e-01   p_joint 5.451327e-04

Joint ci ratio: 1.572613e-01	ci left: 5.018974e-04	ci right 5.883923e-04	k: 620	n:1140000
Cons ci ratio: 2.460376e-03	ci left: 6.892370e-01	ci right 6.909357e-01	k: 786699	n:1140000
KS ci ratio: 3.211178e-01	ci left: 1.097526e-04	ci right 1.525044e-04	k: 148	n:1140000
MAGEL2   1140000 perm   771 sec   (1478 perm/sec)   p_kst 1.298246e-04   p_cons 6.900868e-01   p_joint 5.438596e-04

Joint ci ratio: 1.567573e-01	ci left: 5.008746e-04	ci right 5.868907e-04	k: 624	n:1150000
Cons ci ratio: 2.449819e-03	ci left: 6.892121e-01	ci right 6.909035e-01	k: 793567	n:1150000
KS ci ratio: 3.200456e-01	ci left: 1.095979e-04	ci right 1.521176e-04	k: 149	n:1150000
MAGEL2   1150000 perm   782 sec   (1470 perm/sec)   p_kst 1.295652e-04   p_cons 6.900583e-01   p_joint 5.426087e-04

Joint ci ratio: 1.898897e-01	ci left: 3.323759e-04	ci right 4.029167e-04	k: 425	n:1160000
Cons ci ratio: 2.373060e-03	ci left: 7.008656e-01	ci right 7.025316e-01	k: 813971	n:1160000
KS ci ratio: 3.200458e-01	ci left: 1.086531e-04	ci right 1.508063e-04	k: 149	n:1160000
MAGEL2   1160000 perm   793 sec   (1462 perm/sec)   p_kst 1.284483e-04   p_cons 7.016991e-01   p_joint 3.663793e-04

Joint ci ratio: 1.903374e-01	ci left: 3.279069e-04	ci right 3.976824e-04	k: 423	n:1170000
Cons ci ratio: 2.362718e-03	ci left: 7.009009e-01	ci right 7.025597e-01	k: 821025	n:1170000
KS ci ratio: 3.189844e-01	ci left: 1.085106e-04	ci right 1.504403e-04	k: 150	n:1170000
MAGEL2   1170000 perm   804 sec   (1455 perm/sec)   p_kst 1.282051e-04   p_cons 7.017308e-01   p_joint 3.615385e-04

Joint ci ratio: 1.903377e-01	ci left: 3.251280e-04	ci right 3.943122e-04	k: 423	n:1180000
Cons ci ratio: 2.352634e-03	ci left: 7.009135e-01	ci right 7.025652e-01	k: 828053	n:1180000
KS ci ratio: 3.179334e-01	ci left: 1.083707e-04	ci right 1.500804e-04	k: 151	n:1180000
MAGEL2   1180000 perm   815 sec   (1447 perm/sec)   p_kst 1.279661e-04   p_cons 7.017398e-01   p_joint 3.584746e-04

Joint ci ratio: 1.898905e-01	ci left: 3.239965e-04	ci right 3.927593e-04	k: 425	n:1190000
Cons ci ratio: 2.342509e-03	ci left: 7.009561e-01	ci right 7.026009e-01	k: 835117	n:1190000
KS ci ratio: 3.168927e-01	ci left: 1.082334e-04	ci right 1.497263e-04	k: 152	n:1190000
MAGEL2   1190000 perm   826 sec   (1440 perm/sec)   p_kst 1.277311e-04   p_cons 7.017790e-01   p_joint 3.571429e-04

Joint ci ratio: 1.887858e-01	ci left: 3.252657e-04	ci right 3.938502e-04	k: 430	n:1200000
Cons ci ratio: 2.332709e-03	ci left: 7.009631e-01	ci right 7.026009e-01	k: 842139	n:1200000
KS ci ratio: 3.148415e-01	ci left: 1.088660e-04	ci right 1.502769e-04	k: 154	n:1200000
MAGEL2   1200000 perm   838 sec   (1432 perm/sec)   p_kst 1.283333e-04   p_cons 7.017825e-01   p_joint 3.583333e-04

Joint ci ratio: 1.885673e-01	ci left: 3.233650e-04	ci right 3.914607e-04	k: 431	n:1210000
Cons ci ratio: 2.322998e-03	ci left: 7.009757e-01	ci right 7.026068e-01	k: 849168	n:1210000
KS ci ratio: 3.138308e-01	ci left: 1.087276e-04	ci right 1.499264e-04	k: 155	n:1210000
MAGEL2   1210000 perm   849 sec   (1424 perm/sec)   p_kst 1.280992e-04   p_cons 7.017917e-01   p_joint 3.561983e-04

Joint ci ratio: 1.887863e-01	ci left: 3.199334e-04	ci right 3.873937e-04	k: 430	n:1220000
Cons ci ratio: 2.313440e-03	ci left: 7.009824e-01	ci right 7.026068e-01	k: 856190	n:1220000
KS ci ratio: 3.138310e-01	ci left: 1.078364e-04	ci right 1.486975e-04	k: 155	n:1220000
MAGEL2   1220000 perm   861 sec   (1416 perm/sec)   p_kst 1.270492e-04   p_cons 7.017951e-01   p_joint 3.524590e-04

Joint ci ratio: 1.879163e-01	ci left: 3.204311e-04	ci right 3.876494e-04	k: 434	n:1230000
Cons ci ratio: 2.304146e-03	ci left: 7.009622e-01	ci right 7.025800e-01	k: 863179	n:1230000
KS ci ratio: 3.128300e-01	ci left: 1.077087e-04	ci right 1.483653e-04	k: 156	n:1230000
MAGEL2   1230000 perm   873 sec   (1409 perm/sec)   p_kst 1.268293e-04   p_cons 7.017715e-01   p_joint 3.528455e-04

Joint ci ratio: 1.870582e-01	ci left: 3.209213e-04	ci right 3.879002e-04	k: 438	n:1240000
Cons ci ratio: 2.295056e-03	ci left: 7.009253e-01	ci right 7.025366e-01	k: 870147	n:1240000
KS ci ratio: 3.108562e-01	ci left: 1.083268e-04	ci right 1.489075e-04	k: 158	n:1240000
MAGEL2   1240000 perm   884 sec   (1402 perm/sec)   p_kst 1.274194e-04   p_cons 7.017315e-01   p_joint 3.532258e-04

Joint ci ratio: 1.857927e-01	ci left: 3.229300e-04	ci right 3.898207e-04	k: 444	n:1250000
Cons ci ratio: 2.286103e-03	ci left: 7.008835e-01	ci right 7.024884e-01	k: 877108	n:1250000
KS ci ratio: 3.079642e-01	ci left: 1.096739e-04	ci right 1.503020e-04	k: 161	n:1250000
MAGEL2   1250000 perm   896 sec   (1395 perm/sec)   p_kst 1.288000e-04   p_cons 7.016864e-01   p_joint 3.552000e-04

Joint ci ratio: 1.851696e-01	ci left: 3.226375e-04	ci right 3.892183e-04	k: 447	n:1260000
Cons ci ratio: 2.277000e-03	ci left: 7.008892e-01	ci right 7.024877e-01	k: 884128	n:1260000
KS ci ratio: 3.060805e-01	ci left: 1.102685e-04	ci right 1.508183e-04	k: 163	n:1260000
MAGEL2   1260000 perm   908 sec   (1388 perm/sec)   p_kst 1.293651e-04   p_cons 7.016889e-01   p_joint 3.547619e-04

Joint ci ratio: 1.926260e-01	ci left: 2.945904e-04	ci right 3.581184e-04	k: 413	n:1270000
Cons ci ratio: 2.267667e-03	ci left: 7.009570e-01	ci right 7.025491e-01	k: 891227	n:1270000
KS ci ratio: 3.042310e-01	ci left: 1.108545e-04	ci right 1.513258e-04	k: 165	n:1270000
MAGEL2   1270000 perm   920 sec   (1381 perm/sec)   p_kst 1.299213e-04   p_cons 7.017535e-01   p_joint 3.251969e-04

Joint ci ratio: 1.917021e-01	ci left: 2.952636e-04	ci right 3.585958e-04	k: 417	n:1280000
Cons ci ratio: 2.258385e-03	ci left: 7.010356e-01	ci right 7.026213e-01	k: 898341	n:1280000
KS ci ratio: 3.015184e-01	ci left: 1.121541e-04	ci right 1.526648e-04	k: 168	n:1280000
MAGEL2   1280000 perm   932 sec   (1374 perm/sec)   p_kst 1.312500e-04   p_cons 7.018289e-01   p_joint 3.257813e-04

Joint ci ratio: 1.535981e-01	ci left: 4.658880e-04	ci right 5.441349e-04	k: 650	n:1290000
Cons ci ratio: 2.249941e-03	ci left: 7.009779e-01	ci right 7.025576e-01	k: 905281	n:1290000
KS ci ratio: 3.138321e-01	ci left: 1.019847e-04	ci right 1.406287e-04	k: 155	n:1290000
MAGEL2   1290000 perm   943 sec   (1367 perm/sec)   p_kst 1.201550e-04   p_cons 7.017682e-01   p_joint 5.038760e-04

Joint ci ratio: 1.539537e-01	ci left: 4.600852e-04	ci right 5.375530e-04	k: 647	n:1300000
Cons ci ratio: 2.241245e-03	ci left: 7.009858e-01	ci right 7.025594e-01	k: 912305	n:1300000
KS ci ratio: 3.128310e-01	ci left: 1.019090e-04	ci right 1.403765e-04	k: 156	n:1300000
MAGEL2   1300000 perm   956 sec   (1360 perm/sec)   p_kst 1.200000e-04   p_cons 7.017731e-01   p_joint 4.976923e-04

Joint ci ratio: 1.534808e-01	ci left: 4.595091e-04	ci right 5.366203e-04	k: 651	n:1310000
Cons ci ratio: 2.232705e-03	ci left: 7.009829e-01	ci right 7.025505e-01	k: 919315	n:1310000
KS ci ratio: 3.118395e-01	ci left: 1.018346e-04	ci right 1.401279e-04	k: 157	n:1310000
MAGEL2   1310000 perm   968 sec   (1353 perm/sec)   p_kst 1.198473e-04   p_cons 7.017672e-01   p_joint 4.969466e-04

Joint ci ratio: 1.526633e-01	ci left: 4.611279e-04	ci right 5.380610e-04	k: 658	n:1320000
Cons ci ratio: 2.224307e-03	ci left: 7.009718e-01	ci right 7.025334e-01	k: 926314	n:1320000
KS ci ratio: 3.079653e-01	ci left: 1.038578e-04	ci right 1.423315e-04	k: 161	n:1320000
MAGEL2   1320000 perm   981 sec   (1346 perm/sec)   p_kst 1.219697e-04   p_cons 7.017530e-01   p_joint 4.984848e-04

Joint ci ratio: 1.519730e-01	ci left: 4.620001e-04	ci right 5.386985e-04	k: 664	n:1330000
Cons ci ratio: 2.215824e-03	ci left: 7.009946e-01	ci right 7.025504e-01	k: 933358	n:1330000
KS ci ratio: 3.079654e-01	ci left: 1.030769e-04	ci right 1.412614e-04	k: 161	n:1330000
MAGEL2   1330000 perm   993 sec   (1339 perm/sec)   p_kst 1.210526e-04   p_cons 7.017729e-01   p_joint 4.992481e-04

Joint ci ratio: 1.541931e-01	ci left: 4.449161e-04	ci right 5.199569e-04	k: 645	n:1340000
Cons ci ratio: 2.207465e-03	ci left: 7.010119e-01	ci right 7.025618e-01	k: 940395	n:1340000
KS ci ratio: 3.070193e-01	ci left: 1.029964e-04	ci right 1.410108e-04	k: 162	n:1340000
MAGEL2   1340000 perm   1006 sec   (1332 perm/sec)   p_kst 1.208955e-04   p_cons 7.017873e-01   p_joint 4.813433e-04

Joint ci ratio: 1.538364e-01	ci left: 4.437570e-04	ci right 5.184132e-04	k: 648	n:1350000
Cons ci ratio: 2.199406e-03	ci left: 7.009897e-01	ci right 7.025339e-01	k: 947379	n:1350000
KS ci ratio: 3.070194e-01	ci left: 1.022334e-04	ci right 1.399663e-04	k: 162	n:1350000
MAGEL2   1350000 perm   1019 sec   (1325 perm/sec)   p_kst 1.200000e-04   p_cons 7.017622e-01   p_joint 4.800000e-04

Joint ci ratio: 1.527805e-01	ci left: 4.468579e-04	ci right 5.214726e-04	k: 657	n:1360000
Cons ci ratio: 2.191119e-03	ci left: 7.010282e-01	ci right 7.025666e-01	k: 954445	n:1360000
KS ci ratio: 3.033200e-01	ci left: 1.041977e-04	ci right 1.421028e-04	k: 166	n:1360000
MAGEL2   1360000 perm   1031 sec   (1319 perm/sec)   p_kst 1.220588e-04   p_cons 7.017978e-01   p_joint 4.830882e-04

Joint ci ratio: 1.523183e-01	ci left: 4.464044e-04	ci right 5.206973e-04	k: 661	n:1370000
Cons ci ratio: 2.182802e-03	ci left: 7.010894e-01	ci right 7.026221e-01	k: 961543	n:1370000
KS ci ratio: 3.024159e-01	ci left: 1.041116e-04	ci right 1.418508e-04	k: 167	n:1370000
MAGEL2   1370000 perm   1044 sec   (1312 perm/sec)   p_kst 1.218978e-04   p_cons 7.018562e-01   p_joint 4.824818e-04

Joint ci ratio: 1.515192e-01	ci left: 4.480493e-04	ci right 5.221893e-04	k: 668	n:1380000
Cons ci ratio: 2.174614e-03	ci left: 7.011433e-01	ci right 7.026704e-01	k: 968632	n:1380000
KS ci ratio: 3.015199e-01	ci left: 1.040269e-04	ci right 1.416023e-04	k: 168	n:1380000
MAGEL2   1380000 perm   1057 sec   (1305 perm/sec)   p_kst 1.217391e-04   p_cons 7.019072e-01   p_joint 4.840580e-04

Joint ci ratio: 1.510683e-01	ci left: 4.475946e-04	ci right 5.214191e-04	k: 672	n:1390000
Cons ci ratio: 2.166726e-03	ci left: 7.011561e-01	ci right 7.026776e-01	k: 975665	n:1390000
KS ci ratio: 2.997513e-01	ci left: 1.046089e-04	ci right 1.421306e-04	k: 170	n:1390000
MAGEL2   1390000 perm   1070 sec   (1299 perm/sec)   p_kst 1.223022e-04   p_cons 7.019173e-01   p_joint 4.834532e-04

Joint ci ratio: 1.502886e-01	ci left: 4.492091e-04	ci right 5.228830e-04	k: 679	n:1400000
Cons ci ratio: 2.159166e-03	ci left: 7.011215e-01	ci right 7.026377e-01	k: 982632	n:1400000
KS ci ratio: 2.971559e-01	ci left: 1.058441e-04	ci right 1.434182e-04	k: 173	n:1400000
MAGEL2   1400000 perm   1083 sec   (1293 perm/sec)   p_kst 1.235714e-04   p_cons 7.018800e-01   p_joint 4.850000e-04

Joint ci ratio: 1.526658e-01	ci left: 4.316937e-04	ci right 5.037173e-04	k: 658	n:1410000
Cons ci ratio: 2.151488e-03	ci left: 7.011258e-01	ci right 7.026365e-01	k: 989653	n:1410000
KS ci ratio: 2.954626e-01	ci left: 1.064065e-04	ci right 1.439246e-04	k: 175	n:1410000
MAGEL2   1410000 perm   1095 sec   (1287 perm/sec)   p_kst 1.241135e-04   p_cons 7.018816e-01   p_joint 4.666667e-04

Joint ci ratio: 1.528983e-01	ci left: 4.272989e-04	ci right 4.987079e-04	k: 656	n:1420000
Cons ci ratio: 2.143873e-03	ci left: 7.011335e-01	ci right 7.026389e-01	k: 996679	n:1420000
KS ci ratio: 2.954627e-01	ci left: 1.056571e-04	ci right 1.429110e-04	k: 175	n:1420000
MAGEL2   1420000 perm   1109 sec   (1281 perm/sec)   p_kst 1.232394e-04   p_cons 7.018866e-01   p_joint 4.619718e-04

Joint ci ratio: 1.525505e-01	ci left: 4.263286e-04	ci right 4.973984e-04	k: 659	n:1430000
Cons ci ratio: 2.136388e-03	ci left: 7.011313e-01	ci right 7.026315e-01	k: 1003691	n:1430000
KS ci ratio: 2.929761e-01	ci left: 1.068614e-04	ci right 1.441639e-04	k: 178	n:1430000
MAGEL2   1430000 perm   1122 sec   (1275 perm/sec)   p_kst 1.244755e-04   p_cons 7.018818e-01   p_joint 4.608392e-04

Joint ci ratio: 1.523200e-01	ci left: 4.247038e-04	ci right 4.953861e-04	k: 661	n:1440000
Cons ci ratio: 2.129006e-03	ci left: 7.011243e-01	ci right 7.026193e-01	k: 1010696	n:1440000
KS ci ratio: 2.921612e-01	ci left: 1.067628e-04	ci right 1.439081e-04	k: 179	n:1440000
MAGEL2   1440000 perm   1135 sec   (1269 perm/sec)   p_kst 1.243056e-04   p_cons 7.018722e-01   p_joint 4.590278e-04

Joint ci ratio: 1.518620e-01	ci left: 4.244285e-04	ci right 4.948332e-04	k: 665	n:1450000
Cons ci ratio: 2.121542e-03	ci left: 7.011485e-01	ci right 7.026383e-01	k: 1017746	n:1450000
KS ci ratio: 2.905514e-01	ci left: 1.073050e-04	ci right 1.443954e-04	k: 181	n:1450000
MAGEL2   1450000 perm   1148 sec   (1263 perm/sec)   p_kst 1.248276e-04   p_cons 7.018938e-01   p_joint 4.586207e-04

Joint ci ratio: 1.512951e-01	ci left: 4.248162e-04	ci right 4.949984e-04	k: 670	n:1460000
Cons ci ratio: 2.114164e-03	ci left: 7.011710e-01	ci right 7.026556e-01	k: 1024794	n:1460000
KS ci ratio: 2.889679e-01	ci left: 1.078403e-04	ci right 1.448755e-04	k: 183	n:1460000
MAGEL2   1460000 perm   1162 sec   (1257 perm/sec)   p_kst 1.253425e-04   p_cons 7.019137e-01   p_joint 4.589041e-04

Joint ci ratio: 1.507345e-01	ci left: 4.251991e-04	ci right 4.951608e-04	k: 675	n:1470000
Cons ci ratio: 2.106958e-03	ci left: 7.011741e-01	ci right 7.026537e-01	k: 1031814	n:1470000
KS ci ratio: 2.874101e-01	ci left: 1.083690e-04	ci right 1.453486e-04	k: 185	n:1470000
MAGEL2   1470000 perm   1175 sec   (1251 perm/sec)   p_kst 1.258503e-04   p_cons 7.019143e-01   p_joint 4.591837e-04

Joint ci ratio: 1.501801e-01	ci left: 4.255774e-04	ci right 4.953206e-04	k: 680	n:1480000
Cons ci ratio: 2.099597e-03	ci left: 7.012225e-01	ci right 7.026970e-01	k: 1038901	n:1480000
KS ci ratio: 2.866406e-01	ci left: 1.082638e-04	ci right 1.450907e-04	k: 186	n:1480000
MAGEL2   1480000 perm   1189 sec   (1245 perm/sec)   p_kst 1.256757e-04   p_cons 7.019601e-01   p_joint 4.594595e-04

Joint ci ratio: 1.498505e-01	ci left: 4.246590e-04	ci right 4.940853e-04	k: 683	n:1490000
Cons ci ratio: 2.092475e-03	ci left: 7.012380e-01	ci right 7.027075e-01	k: 1045940	n:1490000
KS ci ratio: 2.851199e-01	ci left: 1.087832e-04	ci right 1.455552e-04	k: 188	n:1490000
MAGEL2   1490000 perm   1203 sec   (1239 perm/sec)   p_kst 1.261745e-04   p_cons 7.019732e-01   p_joint 4.583893e-04

Joint ci ratio: 1.496320e-01	ci left: 4.231113e-04	ci right 4.921746e-04	k: 685	n:1500000
Cons ci ratio: 2.085717e-03	ci left: 7.011946e-01	ci right 7.026593e-01	k: 1052891	n:1500000
KS ci ratio: 2.843686e-01	ci left: 1.086771e-04	ci right 1.452990e-04	k: 189	n:1500000
MAGEL2   1500000 perm   1216 sec   (1233 perm/sec)   p_kst 1.260000e-04   p_cons 7.019273e-01   p_joint 4.566667e-04

Joint ci ratio: 1.505128e-01	ci left: 4.152100e-04	ci right 4.834186e-04	k: 677	n:1510000
Cons ci ratio: 2.078645e-03	ci left: 7.012280e-01	ci right 7.026878e-01	k: 1059957	n:1510000
KS ci ratio: 2.828836e-01	ci left: 1.091877e-04	ci right 1.457552e-04	k: 191	n:1510000
MAGEL2   1510000 perm   1230 sec   (1227 perm/sec)   p_kst 1.264901e-04   p_cons 7.019583e-01   p_joint 4.483444e-04

Joint ci ratio: 1.504021e-01	ci left: 4.131114e-04	ci right 4.809209e-04	k: 678	n:1520000
Cons ci ratio: 2.071857e-03	ci left: 7.012182e-01	ci right 7.026731e-01	k: 1066958	n:1520000
KS ci ratio: 2.828837e-01	ci left: 1.084693e-04	ci right 1.447963e-04	k: 191	n:1520000
MAGEL2   1520000 perm   1244 sec   (1221 perm/sec)   p_kst 1.256579e-04   p_cons 7.019461e-01   p_joint 4.460526e-04

Joint ci ratio: 1.508475e-01	ci left: 4.078954e-04	ci right 4.750649e-04	k: 674	n:1530000
Cons ci ratio: 2.065147e-03	ci left: 7.012059e-01	ci right 7.026561e-01	k: 1073955	n:1530000
KS ci ratio: 2.821499e-01	ci left: 1.083676e-04	ci right 1.445497e-04	k: 192	n:1530000
MAGEL2   1530000 perm   1259 sec   (1215 perm/sec)   p_kst 1.254902e-04   p_cons 7.019314e-01   p_joint 4.405229e-04

Joint ci ratio: 1.511842e-01	ci left: 4.033723e-04	ci right 4.699585e-04	k: 671	n:1540000
Cons ci ratio: 2.058614e-03	ci left: 7.011710e-01	ci right 7.026166e-01	k: 1080917	n:1540000
KS ci ratio: 2.799821e-01	ci left: 1.094747e-04	ci right 1.456960e-04	k: 195	n:1540000
MAGEL2   1540000 perm   1274 sec   (1209 perm/sec)   p_kst 1.266234e-04   p_cons 7.018942e-01   p_joint 4.357143e-04

Joint ci ratio: 1.508480e-01	ci left: 4.026322e-04	ci right 4.689351e-04	k: 674	n:1550000
Cons ci ratio: 2.051833e-03	ci left: 7.011998e-01	ci right 7.026407e-01	k: 1087977	n:1550000
KS ci ratio: 2.792706e-01	ci left: 1.093684e-04	ci right 1.454463e-04	k: 196	n:1550000
MAGEL2   1550000 perm   1288 sec   (1204 perm/sec)   p_kst 1.264516e-04   p_cons 7.019206e-01   p_joint 4.348387e-04

Joint ci ratio: 1.517505e-01	ci left: 3.951170e-04	ci right 4.606070e-04	k: 666	n:1560000
Cons ci ratio: 2.045297e-03	ci left: 7.011918e-01	ci right 7.026280e-01	k: 1094980	n:1560000
KS ci ratio: 2.785645e-01	ci left: 1.092635e-04	ci right 1.451997e-04	k: 197	n:1560000
MAGEL2   1560000 perm   1302 sec   (1198 perm/sec)   p_kst 1.262821e-04   p_cons 7.019103e-01   p_joint 4.269231e-04

Joint ci ratio: 1.510725e-01	ci left: 3.962773e-04	ci right 4.616396e-04	k: 672	n:1570000
Cons ci ratio: 2.038522e-03	ci left: 7.012456e-01	ci right 7.026772e-01	k: 1102080	n:1570000
KS ci ratio: 2.771681e-01	ci left: 1.097527e-04	ci right 1.456373e-04	k: 199	n:1570000
MAGEL2   1570000 perm   1317 sec   (1192 perm/sec)   p_kst 1.267516e-04   p_cons 7.019618e-01   p_joint 4.280255e-04

Joint ci ratio: 1.504034e-01	ci left: 3.974234e-04	ci right 4.626584e-04	k: 678	n:1580000
Cons ci ratio: 2.032253e-03	ci left: 7.012082e-01	ci right 7.026353e-01	k: 1109037	n:1580000
KS ci ratio: 2.757925e-01	ci left: 1.102361e-04	ci right 1.460689e-04	k: 201	n:1580000
MAGEL2   1580000 perm   1332 sec   (1186 perm/sec)   p_kst 1.272152e-04   p_cons 7.019222e-01   p_joint 4.291139e-04

Joint ci ratio: 1.497432e-01	ci left: 3.985558e-04	ci right 4.636637e-04	k: 684	n:1590000
Cons ci ratio: 2.025774e-03	ci left: 7.012267e-01	ci right 7.026493e-01	k: 1116082	n:1590000
KS ci ratio: 2.744372e-01	ci left: 1.107139e-04	ci right 1.464946e-04	k: 203	n:1590000
MAGEL2   1590000 perm   1346 sec   (1181 perm/sec)   p_kst 1.276730e-04   p_cons 7.019384e-01   p_joint 4.301887e-04

Joint ci ratio: 1.495252e-01	ci left: 3.972680e-04	ci right 4.620626e-04	k: 686	n:1600000
Cons ci ratio: 2.019612e-03	ci left: 7.011918e-01	ci right 7.026100e-01	k: 1123042	n:1600000
KS ci ratio: 2.737671e-01	ci left: 1.106040e-04	ci right 1.462469e-04	k: 204	n:1600000
MAGEL2   1600000 perm   1360 sec   (1176 perm/sec)   p_kst 1.275000e-04   p_cons 7.019013e-01   p_joint 4.287500e-04

Joint ci ratio: 1.487690e-01	ci left: 3.989861e-04	ci right 4.637026e-04	k: 693	n:1610000
Cons ci ratio: 2.013307e-03	ci left: 7.011990e-01	ci right 7.026127e-01	k: 1130069	n:1610000
KS ci ratio: 2.724412e-01	ci left: 1.110742e-04	ci right 1.466656e-04	k: 206	n:1610000
MAGEL2   1610000 perm   1375 sec   (1171 perm/sec)   p_kst 1.279503e-04   p_cons 7.019062e-01   p_joint 4.304348e-04

Joint ci ratio: 1.481300e-01	ci left: 4.000894e-04	ci right 4.646814e-04	k: 699	n:1620000
Cons ci ratio: 2.006805e-03	ci left: 7.012592e-01	ci right 7.026685e-01	k: 1137182	n:1620000
KS ci ratio: 2.711345e-01	ci left: 1.115390e-04	ci right 1.470788e-04	k: 208	n:1620000
MAGEL2   1620000 perm   1389 sec   (1166 perm/sec)   p_kst 1.283951e-04   p_cons 7.019642e-01   p_joint 4.314815e-04

Joint ci ratio: 1.480245e-01	ci left: 3.982256e-04	ci right 4.624668e-04	k: 700	n:1630000
Cons ci ratio: 2.000744e-03	ci left: 7.012395e-01	ci right 7.026445e-01	k: 1144166	n:1630000
KS ci ratio: 2.704882e-01	ci left: 1.114266e-04	ci right 1.468315e-04	k: 209	n:1630000
MAGEL2   1630000 perm   1404 sec   (1161 perm/sec)   p_kst 1.282209e-04   p_cons 7.019423e-01   p_joint 4.294479e-04

Joint ci ratio: 1.477088e-01	ci left: 3.975590e-04	ci right 4.615438e-04	k: 703	n:1640000
Cons ci ratio: 1.994529e-03	ci left: 7.012639e-01	ci right 7.026646e-01	k: 1151222	n:1640000
KS ci ratio: 2.704883e-01	ci left: 1.107471e-04	ci right 1.459362e-04	k: 209	n:1640000
MAGEL2   1640000 perm   1418 sec   (1156 perm/sec)   p_kst 1.274390e-04   p_cons 7.019646e-01   p_joint 4.286585e-04

Joint ci ratio: 1.512991e-01	ci left: 3.758972e-04	ci right 4.379995e-04	k: 670	n:1650000
Cons ci ratio: 1.988621e-03	ci left: 7.012354e-01	ci right 7.026318e-01	k: 1158191	n:1650000
KS ci ratio: 2.692093e-01	ci left: 1.112061e-04	ci right 1.463456e-04	k: 211	n:1650000
MAGEL2   1650000 perm   1433 sec   (1151 perm/sec)   p_kst 1.278788e-04   p_cons 7.019339e-01   p_joint 4.060606e-04

Joint ci ratio: 1.508501e-01	ci left: 3.759514e-04	ci right 4.378616e-04	k: 674	n:1660000
Cons ci ratio: 1.982698e-03	ci left: 7.012216e-01	ci right 7.026139e-01	k: 1165184	n:1660000
KS ci ratio: 2.692094e-01	ci left: 1.105361e-04	ci right 1.454640e-04	k: 211	n:1660000
MAGEL2   1660000 perm   1449 sec   (1146 perm/sec)   p_kst 1.271084e-04   p_cons 7.019181e-01   p_joint 4.060241e-04

Joint ci ratio: 1.525556e-01	ci left: 3.650589e-04	ci right 4.259171e-04	k: 659	n:1670000
Cons ci ratio: 1.976801e-03	ci left: 7.012134e-01	ci right 7.026015e-01	k: 1172186	n:1670000
KS ci ratio: 2.673245e-01	ci left: 1.115499e-04	ci right 1.465099e-04	k: 214	n:1670000
MAGEL2   1670000 perm   1464 sec   (1140 perm/sec)   p_kst 1.281437e-04   p_cons 7.019078e-01   p_joint 3.946108e-04

Joint ci ratio: 1.522101e-01	ci left: 3.646035e-04	ci right 4.252357e-04	k: 662	n:1680000
Cons ci ratio: 1.971089e-03	ci left: 7.011773e-01	ci right 7.025613e-01	k: 1179141	n:1680000
KS ci ratio: 2.673246e-01	ci left: 1.108859e-04	ci right 1.456379e-04	k: 214	n:1680000
MAGEL2   1680000 perm   1480 sec   (1135 perm/sec)   p_kst 1.273810e-04   p_cons 7.018696e-01   p_joint 3.940476e-04

Joint ci ratio: 1.518669e-01	ci left: 3.641537e-04	ci right 4.245621e-04	k: 665	n:1690000
Cons ci ratio: 1.965261e-03	ci left: 7.011766e-01	ci right 7.025565e-01	k: 1186155	n:1690000
KS ci ratio: 2.667051e-01	ci left: 1.107818e-04	ci right 1.454073e-04	k: 215	n:1690000
MAGEL2   1690000 perm   1495 sec   (1131 perm/sec)   p_kst 1.272189e-04   p_cons 7.018669e-01   p_joint 3.934911e-04

Joint ci ratio: 1.514129e-01	ci left: 3.642753e-04	ci right 4.245068e-04	k: 669	n:1700000
Cons ci ratio: 1.959359e-03	ci left: 7.012029e-01	ci right 7.025787e-01	k: 1193215	n:1700000
KS ci ratio: 2.654788e-01	ci left: 1.112282e-04	ci right 1.458067e-04	k: 217	n:1700000
MAGEL2   1700000 perm   1510 sec   (1126 perm/sec)   p_kst 1.276471e-04   p_cons 7.018912e-01   p_joint 3.935294e-04

Joint ci ratio: 1.524408e-01	ci left: 3.570819e-04	ci right 4.165614e-04	k: 660	n:1710000
Cons ci ratio: 1.953700e-03	ci left: 7.011880e-01	ci right 7.025598e-01	k: 1200205	n:1710000
KS ci ratio: 2.654789e-01	ci left: 1.105777e-04	ci right 1.449541e-04	k: 217	n:1710000
MAGEL2   1710000 perm   1525 sec   (1121 perm/sec)   p_kst 1.269006e-04   p_cons 7.018743e-01   p_joint 3.859649e-04

Joint ci ratio: 1.520961e-01	ci left: 3.566835e-04	ci right 4.159501e-04	k: 663	n:1720000
Cons ci ratio: 1.948034e-03	ci left: 7.011855e-01	ci right 7.025533e-01	k: 1207216	n:1720000
KS ci ratio: 2.648721e-01	ci left: 1.104776e-04	ci right 1.447313e-04	k: 218	n:1720000
MAGEL2   1720000 perm   1542 sec   (1116 perm/sec)   p_kst 1.267442e-04   p_cons 7.018698e-01   p_joint 3.854651e-04

Joint ci ratio: 1.518676e-01	ci left: 3.557339e-04	ci right 4.147458e-04	k: 665	n:1730000
Cons ci ratio: 1.942427e-03	ci left: 7.011807e-01	ci right 7.025446e-01	k: 1214223	n:1730000
KS ci ratio: 2.648722e-01	ci left: 1.098390e-04	ci right 1.438947e-04	k: 218	n:1730000
MAGEL2   1730000 perm   1557 sec   (1111 perm/sec)   p_kst 1.260116e-04   p_cons 7.018630e-01   p_joint 3.843931e-04

Joint ci ratio: 1.515268e-01	ci left: 3.553481e-04	ci right 4.141517e-04	k: 668	n:1740000
Cons ci ratio: 1.936966e-03	ci left: 7.011547e-01	ci right 7.025147e-01	k: 1221193	n:1740000
KS ci ratio: 2.642696e-01	ci left: 1.097443e-04	ci right 1.436805e-04	k: 219	n:1740000
MAGEL2   1740000 perm   1573 sec   (1106 perm/sec)   p_kst 1.258621e-04   p_cons 7.018351e-01   p_joint 3.839080e-04

Joint ci ratio: 1.517540e-01	ci left: 3.522180e-04	ci right 4.105990e-04	k: 666	n:1750000
Cons ci ratio: 1.931214e-03	ci left: 7.012022e-01	ci right 7.025583e-01	k: 1228291	n:1750000
KS ci ratio: 2.636710e-01	ci left: 1.096508e-04	ci right 1.434686e-04	k: 220	n:1750000
MAGEL2   1750000 perm   1589 sec   (1101 perm/sec)   p_kst 1.257143e-04   p_cons 7.018806e-01   p_joint 3.805714e-04

Joint ci ratio: 1.514139e-01	ci left: 3.518567e-04	ci right 4.100352e-04	k: 669	n:1760000
Cons ci ratio: 1.925638e-03	ci left: 7.012219e-01	ci right 7.025740e-01	k: 1235341	n:1760000
KS ci ratio: 2.630765e-01	ci left: 1.095585e-04	ci right 1.432590e-04	k: 221	n:1760000
MAGEL2   1760000 perm   1605 sec   (1097 perm/sec)   p_kst 1.255682e-04   p_cons 7.018983e-01   p_joint 3.801136e-04

Joint ci ratio: 1.524418e-01	ci left: 3.449772e-04	ci right 4.024409e-04	k: 660	n:1770000
Cons ci ratio: 1.920051e-03	ci left: 7.012543e-01	ci right 7.026026e-01	k: 1242414	n:1770000
KS ci ratio: 2.630766e-01	ci left: 1.089395e-04	ci right 1.424497e-04	k: 221	n:1770000
MAGEL2   1770000 perm   1621 sec   (1092 perm/sec)   p_kst 1.248588e-04   p_cons 7.019288e-01   p_joint 3.728814e-04

Joint ci ratio: 1.519826e-01	ci left: 3.452008e-04	ci right 4.025127e-04	k: 664	n:1780000
Cons ci ratio: 1.914561e-03	ci left: 7.012758e-01	ci right 7.026202e-01	k: 1249468	n:1780000
KS ci ratio: 2.630767e-01	ci left: 1.083275e-04	ci right 1.416494e-04	k: 221	n:1780000
MAGEL2   1780000 perm   1637 sec   (1087 perm/sec)   p_kst 1.241573e-04   p_cons 7.019483e-01   p_joint 3.730337e-04

Joint ci ratio: 1.529057e-01	ci left: 3.389734e-04	ci right 3.956245e-04	k: 656	n:1790000
Cons ci ratio: 1.909400e-03	ci left: 7.012349e-01	ci right 7.025756e-01	k: 1256411	n:1790000
KS ci ratio: 2.630768e-01	ci left: 1.077223e-04	ci right 1.408581e-04	k: 221	n:1790000
MAGEL2   1790000 perm   1654 sec   (1083 perm/sec)   p_kst 1.234637e-04   p_cons 7.019056e-01   p_joint 3.664804e-04

Joint ci ratio: 1.525578e-01	ci left: 3.386932e-04	ci right 3.951569e-04	k: 659	n:1800000
Cons ci ratio: 1.903980e-03	ci left: 7.012606e-01	ci right 7.025976e-01	k: 1263473	n:1800000
KS ci ratio: 2.630769e-01	ci left: 1.071238e-04	ci right 1.400755e-04	k: 221	n:1800000
MAGEL2   1800000 perm   1670 sec   (1078 perm/sec)   p_kst 1.227778e-04   p_cons 7.019294e-01   p_joint 3.661111e-04

Joint ci ratio: 1.522123e-01	ci left: 3.384162e-04	ci right 3.946943e-04	k: 662	n:1810000
Cons ci ratio: 1.898632e-03	ci left: 7.012806e-01	ci right 7.026138e-01	k: 1270525	n:1810000
KS ci ratio: 2.618997e-01	ci left: 1.075643e-04	ci right 1.404791e-04	k: 223	n:1810000
MAGEL2   1810000 perm   1686 sec   (1074 perm/sec)   p_kst 1.232044e-04   p_cons 7.019475e-01   p_joint 3.657459e-04

Joint ci ratio: 1.519833e-01	ci left: 3.376138e-04	ci right 3.936664e-04	k: 664	n:1820000
Cons ci ratio: 1.893526e-03	ci left: 7.012563e-01	ci right 7.025859e-01	k: 1277497	n:1820000
KS ci ratio: 2.618998e-01	ci left: 1.069732e-04	ci right 1.397073e-04	k: 223	n:1820000
MAGEL2   1820000 perm   1701 sec   (1070 perm/sec)   p_kst 1.225275e-04   p_cons 7.019214e-01   p_joint 3.648352e-04

Joint ci ratio: 1.516416e-01	ci left: 3.373460e-04	ci right 3.932168e-04	k: 667	n:1830000
Cons ci ratio: 1.888413e-03	ci left: 7.012432e-01	ci right 7.025692e-01	k: 1284489	n:1830000
KS ci ratio: 2.613172e-01	ci left: 1.068993e-04	ci right 1.395260e-04	k: 224	n:1830000
MAGEL2   1830000 perm   1718 sec   (1065 perm/sec)   p_kst 1.224044e-04   p_cons 7.019066e-01   p_joint 3.644809e-04

Joint ci ratio: 1.508532e-01	ci left: 3.391730e-04	ci right 3.950279e-04	k: 674	n:1840000
Cons ci ratio: 1.883265e-03	ci left: 7.012472e-01	ci right 7.025696e-01	k: 1291512	n:1840000
KS ci ratio: 2.601634e-01	ci left: 1.073343e-04	ci right 1.399256e-04	k: 226	n:1840000
MAGEL2   1840000 perm   1734 sec   (1061 perm/sec)   p_kst 1.228261e-04   p_cons 7.019087e-01   p_joint 3.663043e-04

Joint ci ratio: 1.513024e-01	ci left: 3.352592e-04	ci right 3.906489e-04	k: 670	n:1850000
Cons ci ratio: 1.878103e-03	ci left: 7.012635e-01	ci right 7.025823e-01	k: 1298558	n:1850000
KS ci ratio: 2.595923e-01	ci left: 1.072594e-04	ci right 1.397449e-04	k: 227	n:1850000
MAGEL2   1850000 perm   1749 sec   (1057 perm/sec)   p_kst 1.227027e-04   p_cons 7.019232e-01   p_joint 3.621622e-04

Joint ci ratio: 1.509654e-01	ci left: 3.350086e-04	ci right 3.902224e-04	k: 673	n:1860000
Cons ci ratio: 1.872942e-03	ci left: 7.012889e-01	ci right 7.026041e-01	k: 1305621	n:1860000
KS ci ratio: 2.584611e-01	ci left: 1.076882e-04	ci right 1.401385e-04	k: 229	n:1860000
MAGEL2   1860000 perm   1766 sec   (1053 perm/sec)   p_kst 1.231183e-04   p_cons 7.019468e-01   p_joint 3.618280e-04

Joint ci ratio: 1.507419e-01	ci left: 3.342463e-04	ci right 3.892456e-04	k: 675	n:1870000
Cons ci ratio: 1.867914e-03	ci left: 7.012936e-01	ci right 7.026053e-01	k: 1312646	n:1870000
KS ci ratio: 2.573446e-01	ci left: 1.081127e-04	ci right 1.405276e-04	k: 231	n:1870000
MAGEL2   1870000 perm   1782 sec   (1049 perm/sec)   p_kst 1.235294e-04   p_cons 7.019497e-01   p_joint 3.609626e-04

Joint ci ratio: 1.501875e-01	ci left: 3.350278e-04	ci right 3.899347e-04	k: 680	n:1880000
Cons ci ratio: 1.863024e-03	ci left: 7.012764e-01	ci right 7.025847e-01	k: 1319630	n:1880000
KS ci ratio: 2.567918e-01	ci left: 1.080353e-04	ci right 1.403462e-04	k: 232	n:1880000
MAGEL2   1880000 perm   1799 sec   (1045 perm/sec)   p_kst 1.234043e-04   p_cons 7.019309e-01   p_joint 3.617021e-04

Joint ci ratio: 1.555343e-01	ci left: 3.098469e-04	ci right 3.626034e-04	k: 634	n:1890000
Cons ci ratio: 1.858160e-03	ci left: 7.012621e-01	ci right 7.025669e-01	k: 1326619	n:1890000
KS ci ratio: 2.562425e-01	ci left: 1.079588e-04	ci right 1.401667e-04	k: 233	n:1890000
MAGEL2   1890000 perm   1816 sec   (1041 perm/sec)   p_kst 1.232804e-04   p_cons 7.019148e-01   p_joint 3.354497e-04

Joint ci ratio: 1.536106e-01	ci left: 3.163115e-04	ci right 3.694414e-04	k: 650	n:1900000
Cons ci ratio: 1.904695e-03	ci left: 6.896768e-01	ci right 6.909921e-01	k: 1311636	n:1900000
KS ci ratio: 2.556967e-01	ci left: 1.078831e-04	ci right 1.399890e-04	k: 234	n:1900000
MAGEL2   1900000 perm   1832 sec   (1037 perm/sec)   p_kst 1.231579e-04   p_cons 6.903347e-01   p_joint 3.421053e-04

Joint ci ratio: 1.559034e-01	ci left: 3.050929e-04	ci right 3.571748e-04	k: 631	n:1910000
Cons ci ratio: 1.899829e-03	ci left: 6.896500e-01	ci right 6.909620e-01	k: 1318485	n:1910000
KS ci ratio: 2.551544e-01	ci left: 1.078083e-04	ci right 1.398131e-04	k: 235	n:1910000
MAGEL2   1910000 perm   1848 sec   (1033 perm/sec)   p_kst 1.230366e-04   p_cons 6.903063e-01   p_joint 3.303665e-04

Joint ci ratio: 1.567744e-01	ci left: 3.000006e-04	ci right 3.515262e-04	k: 624	n:1920000
Cons ci ratio: 1.894790e-03	ci left: 6.896710e-01	ci right 6.909795e-01	k: 1325425	n:1920000
KS ci ratio: 2.551545e-01	ci left: 1.072468e-04	ci right 1.390849e-04	k: 235	n:1920000
MAGEL2   1920000 perm   1865 sec   (1030 perm/sec)   p_kst 1.223958e-04   p_cons 6.903255e-01   p_joint 3.250000e-04

Joint ci ratio: 1.562751e-01	ci left: 3.004375e-04	ci right 3.518585e-04	k: 628	n:1930000
Cons ci ratio: 1.889761e-03	ci left: 6.896985e-01	ci right 6.910036e-01	k: 1332378	n:1930000
KS ci ratio: 2.535480e-01	ci left: 1.081465e-04	ci right 1.400175e-04	k: 238	n:1930000
MAGEL2   1930000 perm   1881 sec   (1026 perm/sec)   p_kst 1.233161e-04   p_cons 6.903513e-01   p_joint 3.253886e-04

Joint ci ratio: 1.559038e-01	ci left: 3.003749e-04	ci right 3.516515e-04	k: 631	n:1940000
Cons ci ratio: 1.884949e-03	ci left: 6.896854e-01	ci right 6.909872e-01	k: 1339253	n:1940000
KS ci ratio: 2.530192e-01	ci left: 1.080718e-04	ci right 1.398439e-04	k: 239	n:1940000
MAGEL2   1940000 perm   1899 sec   (1022 perm/sec)   p_kst 1.231959e-04   p_cons 6.903366e-01   p_joint 3.252577e-04

Joint ci ratio: 1.584317e-01	ci left: 2.889813e-04	ci right 3.391889e-04	k: 611	n:1950000
Cons ci ratio: 1.880142e-03	ci left: 6.896797e-01	ci right 6.909782e-01	k: 1346142	n:1950000
KS ci ratio: 2.519714e-01	ci left: 1.084783e-04	ci right 1.402171e-04	k: 241	n:1950000
MAGEL2   1950000 perm   1915 sec   (1018 perm/sec)   p_kst 1.235897e-04   p_cons 6.903292e-01   p_joint 3.133333e-04

Joint ci ratio: 1.594779e-01	ci left: 2.835876e-04	ci right 3.332146e-04	k: 603	n:1960000
Cons ci ratio: 1.875340e-03	ci left: 6.896813e-01	ci right 6.909763e-01	k: 1353045	n:1960000
KS ci ratio: 2.514525e-01	ci left: 1.084028e-04	ci right 1.400441e-04	k: 242	n:1960000
MAGEL2   1960000 perm   1932 sec   (1014 perm/sec)   p_kst 1.234694e-04   p_cons 6.903291e-01   p_joint 3.076531e-04

Joint ci ratio: 1.592146e-01	ci left: 2.831228e-04	ci right 3.325788e-04	k: 605	n:1970000
Cons ci ratio: 1.870599e-03	ci left: 6.896772e-01	ci right 6.909690e-01	k: 1359937	n:1970000
KS ci ratio: 2.509367e-01	ci left: 1.083282e-04	ci right 1.398727e-04	k: 243	n:1970000
MAGEL2   1970000 perm   1949 sec   (1011 perm/sec)   p_kst 1.233503e-04   p_cons 6.903234e-01   p_joint 3.071066e-04

Joint ci ratio: 1.589525e-01	ci left: 2.826627e-04	ci right 3.319494e-04	k: 607	n:1980000
Cons ci ratio: 1.865872e-03	ci left: 6.896782e-01	ci right 6.909667e-01	k: 1366839	n:1980000
KS ci ratio: 2.499145e-01	ci left: 1.087278e-04	ci right 1.402396e-04	k: 245	n:1980000
MAGEL2   1980000 perm   1967 sec   (1007 perm/sec)   p_kst 1.237374e-04   p_cons 6.903227e-01   p_joint 3.065657e-04

Joint ci ratio: 1.586918e-01	ci left: 2.822074e-04	ci right 3.313263e-04	k: 609	n:1990000
Cons ci ratio: 1.861170e-03	ci left: 6.896817e-01	ci right 6.909670e-01	k: 1373746	n:1990000
KS ci ratio: 2.484043e-01	ci left: 1.095949e-04	ci right 1.411364e-04	k: 248	n:1990000
MAGEL2   1990000 perm   1985 sec   (1003 perm/sec)   p_kst 1.246231e-04   p_cons 6.903246e-01   p_joint 3.060302e-04

Joint ci ratio: 1.586919e-01	ci left: 2.807963e-04	ci right 3.296697e-04	k: 609	n:2000000
Cons ci ratio: 1.856735e-03	ci left: 6.896317e-01	ci right 6.909138e-01	k: 1380546	n:2000000
KS ci ratio: 2.479070e-01	ci left: 1.095158e-04	ci right 1.409617e-04	k: 249	n:2000000
MAGEL2   2000000 perm   2003 sec   (999 perm/sec)   p_kst 1.245000e-04   p_cons 6.902730e-01   p_joint 3.045000e-04

Joint ci ratio: 1.330247e-01	ci left: 4.031111e-04	ci right 4.610307e-04	k: 867	n:2010000
Cons ci ratio: 1.852272e-03	ci left: 6.895961e-01	ci right 6.908750e-01	k: 1387374	n:2010000
KS ci ratio: 2.469212e-01	ci left: 1.099043e-04	ci right 1.413170e-04	k: 251	n:2010000
MAGEL2   2010000 perm   2020 sec   (995 perm/sec)   p_kst 1.248756e-04   p_cons 6.902358e-01   p_joint 4.313433e-04

Joint ci ratio: 1.328718e-01	ci left: 4.020726e-04	ci right 4.597714e-04	k: 869	n:2020000
Cons ci ratio: 1.847547e-03	ci left: 6.896287e-01	ci right 6.909044e-01	k: 1394339	n:2020000
KS ci ratio: 2.469213e-01	ci left: 1.093602e-04	ci right 1.406174e-04	k: 251	n:2020000
MAGEL2   2020000 perm   2037 sec   (991 perm/sec)   p_kst 1.242574e-04   p_cons 6.902668e-01   p_joint 4.301980e-04

Joint ci ratio: 1.326433e-01	ci left: 4.015207e-04	ci right 4.590334e-04	k: 872	n:2030000
Cons ci ratio: 1.842927e-03	ci left: 6.896452e-01	ci right 6.909178e-01	k: 1401272	n:2030000
KS ci ratio: 2.464329e-01	ci left: 1.092837e-04	ci right 1.404477e-04	k: 252	n:2030000
MAGEL2   2030000 perm   2055 sec   (988 perm/sec)   p_kst 1.241379e-04   p_cons 6.902818e-01   p_joint 4.295567e-04

Joint ci ratio: 1.324917e-01	ci left: 4.005004e-04	ci right 4.577961e-04	k: 874	n:2040000
Cons ci ratio: 1.838290e-03	ci left: 6.896733e-01	ci right 6.909428e-01	k: 1408229	n:2040000
KS ci ratio: 2.464329e-01	ci left: 1.087480e-04	ci right 1.397593e-04	k: 252	n:2040000
MAGEL2   2040000 perm   2072 sec   (984 perm/sec)   p_kst 1.235294e-04   p_cons 6.903083e-01   p_joint 4.284314e-04

Joint ci ratio: 1.321148e-01	ci left: 4.009050e-04	ci right 4.580827e-04	k: 879	n:2050000
Cons ci ratio: 1.833628e-03	ci left: 6.897154e-01	ci right 6.909817e-01	k: 1415215	n:2050000
KS ci ratio: 2.464330e-01	ci left: 1.082175e-04	ci right 1.390775e-04	k: 252	n:2050000
MAGEL2   2050000 perm   2090 sec   (981 perm/sec)   p_kst 1.229268e-04   p_cons 6.903488e-01   p_joint 4.287805e-04

Joint ci ratio: 1.319650e-01	ci left: 3.998976e-04	ci right 4.568619e-04	k: 881	n:2060000
Cons ci ratio: 1.829289e-03	ci left: 6.896895e-01	ci right 6.909527e-01	k: 1422062	n:2060000
KS ci ratio: 2.464331e-01	ci left: 1.076921e-04	ci right 1.384024e-04	k: 252	n:2060000
MAGEL2   2060000 perm   2107 sec   (977 perm/sec)   p_kst 1.223301e-04   p_cons 6.903214e-01   p_joint 4.276699e-04

Joint ci ratio: 1.324165e-01	ci left: 3.951630e-04	ci right 4.516606e-04	k: 875	n:2070000
Cons ci ratio: 1.824808e-03	ci left: 6.897044e-01	ci right 6.909646e-01	k: 1428993	n:2070000
KS ci ratio: 2.464332e-01	ci left: 1.071719e-04	ci right 1.377338e-04	k: 252	n:2070000
MAGEL2   2070000 perm   2125 sec   (974 perm/sec)   p_kst 1.217391e-04   p_cons 6.903348e-01   p_joint 4.227053e-04

Joint ci ratio: 1.323411e-01	ci left: 3.937280e-04	ci right 4.499858e-04	k: 876	n:2080000
Cons ci ratio: 1.820498e-03	ci left: 6.896865e-01	ci right 6.909437e-01	k: 1435856	n:2080000
KS ci ratio: 2.464332e-01	ci left: 1.066566e-04	ci right 1.370716e-04	k: 252	n:2080000
MAGEL2   2080000 perm   2143 sec   (971 perm/sec)   p_kst 1.211538e-04   p_cons 6.903154e-01   p_joint 4.211538e-04

Joint ci ratio: 1.318906e-01	ci left: 3.946201e-04	ci right 4.507984e-04	k: 882	n:2090000
Cons ci ratio: 1.816100e-03	ci left: 6.896971e-01	ci right 6.909512e-01	k: 1442778	n:2090000
KS ci ratio: 2.454649e-01	ci left: 1.070443e-04	ci right 1.374316e-04	k: 254	n:2090000
MAGEL2   2090000 perm   2161 sec   (967 perm/sec)   p_kst 1.215311e-04   p_cons 6.903244e-01   p_joint 4.220096e-04

Joint ci ratio: 1.314447e-01	ci left: 3.955040e-04	ci right 4.516029e-04	k: 888	n:2100000
Cons ci ratio: 1.811733e-03	ci left: 6.897075e-01	ci right 6.909586e-01	k: 1449700	n:2100000
KS ci ratio: 2.445079e-01	ci left: 1.074285e-04	ci right 1.377878e-04	k: 256	n:2100000
MAGEL2   2100000 perm   2179 sec   (964 perm/sec)   p_kst 1.219048e-04   p_cons 6.903333e-01   p_joint 4.228571e-04

Joint ci ratio: 1.312972e-01	ci left: 3.945463e-04	ci right 4.504417e-04	k: 890	n:2110000
Cons ci ratio: 1.807311e-03	ci left: 6.897382e-01	ci right 6.909864e-01	k: 1456665	n:2110000
KS ci ratio: 2.445079e-01	ci left: 1.069193e-04	ci right 1.371348e-04	k: 256	n:2110000
MAGEL2   2110000 perm   2197 sec   (960 perm/sec)   p_kst 1.213270e-04   p_cons 6.903626e-01   p_joint 4.218009e-04

Joint ci ratio: 1.310767e-01	ci left: 3.940539e-04	ci right 4.497784e-04	k: 893	n:2120000
Cons ci ratio: 1.803068e-03	ci left: 6.897337e-01	ci right 6.909789e-01	k: 1463556	n:2120000
KS ci ratio: 2.445080e-01	ci left: 1.064150e-04	ci right 1.364880e-04	k: 256	n:2120000
MAGEL2   2120000 perm   2216 sec   (957 perm/sec)   p_kst 1.207547e-04   p_cons 6.903566e-01   p_joint 4.212264e-04

Joint ci ratio: 1.307845e-01	ci left: 3.940203e-04	ci right 4.496062e-04	k: 897	n:2130000
Cons ci ratio: 1.798903e-03	ci left: 6.897180e-01	ci right 6.909603e-01	k: 1470423	n:2130000
KS ci ratio: 2.435621e-01	ci left: 1.067969e-04	ci right 1.368435e-04	k: 258	n:2130000
MAGEL2   2130000 perm   2234 sec   (953 perm/sec)   p_kst 1.211268e-04   p_cons 6.903394e-01   p_joint 4.211268e-04

Joint ci ratio: 1.312239e-01	ci left: 3.894671e-04	ci right 4.446098e-04	k: 891	n:2140000
Cons ci ratio: 1.794717e-03	ci left: 6.897142e-01	ci right 6.909536e-01	k: 1477315	n:2140000
KS ci ratio: 2.435622e-01	ci left: 1.062979e-04	ci right 1.362040e-04	k: 258	n:2140000
MAGEL2   2140000 perm   2253 sec   (950 perm/sec)   p_kst 1.205607e-04   p_cons 6.903341e-01   p_joint 4.163551e-04

Joint ci ratio: 1.310771e-01	ci left: 3.885554e-04	ci right 4.435026e-04	k: 893	n:2150000
Cons ci ratio: 1.790693e-03	ci left: 6.896787e-01	ci right 6.909152e-01	k: 1484139	n:2150000
KS ci ratio: 2.430933e-01	ci left: 1.062402e-04	ci right 1.360639e-04	k: 259	n:2150000
MAGEL2   2150000 perm   2272 sec   (946 perm/sec)   p_kst 1.204651e-04   p_cons 6.902972e-01   p_joint 4.153488e-04

Joint ci ratio: 1.308578e-01	ci left: 3.880999e-04	ci right 4.428837e-04	k: 896	n:2160000
Cons ci ratio: 1.786410e-03	ci left: 6.897121e-01	ci right 6.909457e-01	k: 1491111	n:2160000
KS ci ratio: 2.430934e-01	ci left: 1.057484e-04	ci right 1.354340e-04	k: 259	n:2160000
MAGEL2   2160000 perm   2291 sec   (943 perm/sec)   p_kst 1.199074e-04   p_cons 6.903292e-01   p_joint 4.148148e-04

Joint ci ratio: 1.306395e-01	ci left: 3.876487e-04	ci right 4.422704e-04	k: 899	n:2170000
Cons ci ratio: 1.782257e-03	ci left: 6.897212e-01	ci right 6.909520e-01	k: 1498031	n:2170000
KS ci ratio: 2.426273e-01	ci left: 1.056938e-04	ci right 1.352987e-04	k: 260	n:2170000
MAGEL2   2170000 perm   2310 sec   (939 perm/sec)   p_kst 1.198157e-04   p_cons 6.903369e-01   p_joint 4.142857e-04

Joint ci ratio: 1.302062e-01	ci left: 3.885330e-04	ci right 4.430837e-04	k: 905	n:2180000
Cons ci ratio: 1.778159e-03	ci left: 6.897238e-01	ci right 6.909518e-01	k: 1504937	n:2180000
KS ci ratio: 2.421638e-01	ci left: 1.056399e-04	ci right 1.351646e-04	k: 261	n:2180000
MAGEL2   2180000 perm   2329 sec   (936 perm/sec)   p_kst 1.197248e-04   p_cons 6.903381e-01   p_joint 4.151376e-04

Joint ci ratio: 1.299912e-01	ci left: 3.880841e-04	ci right 4.424749e-04	k: 908	n:2190000
Cons ci ratio: 1.774190e-03	ci left: 6.897022e-01	ci right 6.909274e-01	k: 1511790	n:2190000
KS ci ratio: 2.421639e-01	ci left: 1.051575e-04	ci right 1.345474e-04	k: 261	n:2190000
MAGEL2   2190000 perm   2348 sec   (933 perm/sec)   p_kst 1.191781e-04   p_cons 6.903151e-01   p_joint 4.146119e-04

Joint ci ratio: 1.296351e-01	ci left: 3.885190e-04	ci right 4.428101e-04	k: 913	n:2200000
Cons ci ratio: 1.770077e-03	ci left: 6.897222e-01	ci right 6.909446e-01	k: 1518734	n:2200000
KS ci ratio: 2.412448e-01	ci left: 1.055335e-04	ci right 1.348999e-04	k: 263	n:2200000
MAGEL2   2200000 perm   2367 sec   (929 perm/sec)   p_kst 1.195455e-04   p_cons 6.903336e-01   p_joint 4.150000e-04

Joint ci ratio: 1.294936e-01	ci left: 3.876366e-04	ci right 4.417408e-04	k: 915	n:2210000
Cons ci ratio: 1.766109e-03	ci left: 6.897135e-01	ci right 6.909331e-01	k: 1525615	n:2210000
KS ci ratio: 2.412449e-01	ci left: 1.050560e-04	ci right 1.342895e-04	k: 263	n:2210000
MAGEL2   2210000 perm   2386 sec   (926 perm/sec)   p_kst 1.190045e-04   p_cons 6.903235e-01   p_joint 4.140271e-04

Joint ci ratio: 1.290715e-01	ci left: 3.885058e-04	ci right 4.425410e-04	k: 921	n:2220000
Cons ci ratio: 1.761869e-03	ci left: 6.897774e-01	ci right 6.909942e-01	k: 1532657	n:2220000
KS ci ratio: 2.394376e-01	ci left: 1.062761e-04	ci right 1.355946e-04	k: 267	n:2220000
MAGEL2   2220000 perm   2406 sec   (923 perm/sec)   p_kst 1.202703e-04   p_cons 6.903860e-01   p_joint 4.148649e-04

Joint ci ratio: 1.353079e-01	ci left: 3.507736e-04	ci right 4.021079e-04	k: 838	n:2230000
Cons ci ratio: 1.758110e-03	ci left: 6.897313e-01	ci right 6.909454e-01	k: 1539455	n:2230000
KS ci ratio: 2.248120e-01	ci left: 1.210053e-04	ci right 1.520661e-04	k: 303	n:2230000
MAGEL2   2230000 perm   2425 sec   (920 perm/sec)   p_kst 1.358744e-04   p_cons 6.903386e-01   p_joint 3.757848e-04

Joint ci ratio: 1.373709e-01	ci left: 3.384274e-04	ci right 3.887718e-04	k: 813	n:2240000
Cons ci ratio: 1.754200e-03	ci left: 6.897280e-01	ci right 6.909394e-01	k: 1546348	n:2240000
KS ci ratio: 2.244432e-01	ci left: 1.208864e-04	ci right 1.518588e-04	k: 304	n:2240000
MAGEL2   2240000 perm   2445 sec   (916 perm/sec)   p_kst 1.357143e-04   p_cons 6.903339e-01   p_joint 3.629464e-04

Joint ci ratio: 1.372025e-01	ci left: 3.377817e-04	ci right 3.879634e-04	k: 815	n:2250000
Cons ci ratio: 1.750324e-03	ci left: 6.897230e-01	ci right 6.909317e-01	k: 1553237	n:2250000
KS ci ratio: 2.240762e-01	ci left: 1.207686e-04	ci right 1.516532e-04	k: 305	n:2250000
MAGEL2   2250000 perm   2464 sec   (913 perm/sec)   p_kst 1.355556e-04   p_cons 6.903276e-01   p_joint 3.622222e-04

Joint ci ratio: 1.368675e-01	ci left: 3.379963e-04	ci right 3.880773e-04	k: 819	n:2260000
Cons ci ratio: 1.746397e-03	ci left: 6.897366e-01	ci right 6.909426e-01	k: 1560168	n:2260000
KS ci ratio: 2.237110e-01	ci left: 1.206519e-04	ci right 1.514494e-04	k: 306	n:2260000
MAGEL2   2260000 perm   2483 sec   (910 perm/sec)   p_kst 1.353982e-04   p_cons 6.903398e-01   p_joint 3.623894e-04

Joint ci ratio: 1.367009e-01	ci left: 3.373582e-04	ci right 3.872789e-04	k: 821	n:2270000
Cons ci ratio: 1.742568e-03	ci left: 6.897324e-01	ci right 6.909358e-01	k: 1567059	n:2270000
KS ci ratio: 2.233475e-01	ci left: 1.205363e-04	ci right 1.512474e-04	k: 307	n:2270000
MAGEL2   2270000 perm   2503 sec   (907 perm/sec)   p_kst 1.352423e-04   p_cons 6.903344e-01   p_joint 3.616740e-04

Joint ci ratio: 1.366179e-01	ci left: 3.363022e-04	ci right 3.860339e-04	k: 822	n:2280000
Cons ci ratio: 1.738629e-03	ci left: 6.897617e-01	ci right 6.909624e-01	k: 1574026	n:2280000
KS ci ratio: 2.229858e-01	ci left: 1.204217e-04	ci right 1.510471e-04	k: 308	n:2280000
MAGEL2   2280000 perm   2523 sec   (904 perm/sec)   p_kst 1.350877e-04   p_cons 6.903623e-01   p_joint 3.605263e-04

Joint ci ratio: 1.374560e-01	ci left: 3.306164e-04	ci right 3.798318e-04	k: 812	n:2290000
Cons ci ratio: 1.734796e-03	ci left: 6.897710e-01	ci right 6.909691e-01	k: 1580948	n:2290000
KS ci ratio: 2.229859e-01	ci left: 1.198958e-04	ci right 1.503875e-04	k: 308	n:2290000
MAGEL2   2290000 perm   2542 sec   (901 perm/sec)   p_kst 1.344978e-04   p_cons 6.903703e-01   p_joint 3.545852e-04

Joint ci ratio: 1.372031e-01	ci left: 3.304385e-04	ci right 3.795295e-04	k: 815	n:2300000
Cons ci ratio: 1.730923e-03	ci left: 6.897964e-01	ci right 6.909918e-01	k: 1587907	n:2300000
KS ci ratio: 2.222677e-01	ci left: 1.201956e-04	ci right 1.506516e-04	k: 310	n:2300000
MAGEL2   2300000 perm   2563 sec   (898 perm/sec)   p_kst 1.347826e-04   p_cons 6.903943e-01   p_joint 3.543478e-04

Joint ci ratio: 1.369516e-01	ci left: 3.302622e-04	ci right 3.792297e-04	k: 818	n:2310000
Cons ci ratio: 1.727052e-03	ci left: 6.898276e-01	ci right 6.910204e-01	k: 1594880	n:2310000
KS ci ratio: 2.222678e-01	ci left: 1.196753e-04	ci right 1.499995e-04	k: 310	n:2310000
MAGEL2   2310000 perm   2583 sec   (894 perm/sec)   p_kst 1.341991e-04   p_cons 6.904242e-01   p_joint 3.541126e-04

Joint ci ratio: 1.367847e-01	ci left: 3.296712e-04	ci right 3.784867e-04	k: 820	n:2320000
Cons ci ratio: 1.723198e-03	ci left: 6.898607e-01	ci right 6.910509e-01	k: 1601858	n:2320000
KS ci ratio: 2.219113e-01	ci left: 1.195665e-04	ci right 1.498079e-04	k: 311	n:2320000
MAGEL2   2320000 perm   2602 sec   (892 perm/sec)   p_kst 1.340517e-04   p_cons 6.904560e-01   p_joint 3.534483e-04

Joint ci ratio: 1.363700e-01	ci left: 3.303289e-04	ci right 3.790815e-04	k: 825	n:2330000
Cons ci ratio: 1.719654e-03	ci left: 6.898227e-01	ci right 6.910103e-01	k: 1608671	n:2330000
KS ci ratio: 2.219114e-01	ci left: 1.190533e-04	ci right 1.491650e-04	k: 311	n:2330000
MAGEL2   2330000 perm   2623 sec   (888 perm/sec)   p_kst 1.334764e-04   p_cons 6.904167e-01   p_joint 3.540773e-04

Joint ci ratio: 1.361231e-01	ci left: 3.301556e-04	ci right 3.787872e-04	k: 828	n:2340000
Cons ci ratio: 1.716081e-03	ci left: 6.897978e-01	ci right 6.909829e-01	k: 1615514	n:2340000
KS ci ratio: 2.215566e-01	ci left: 1.189482e-04	ci right 1.489785e-04	k: 312	n:2340000
MAGEL2   2340000 perm   2644 sec   (885 perm/sec)   p_kst 1.333333e-04   p_cons 6.903906e-01   p_joint 3.538462e-04

Joint ci ratio: 1.357958e-01	ci left: 3.303949e-04	ci right 3.789353e-04	k: 832	n:2350000
Cons ci ratio: 1.712415e-03	ci left: 6.898016e-01	ci right 6.909843e-01	k: 1622424	n:2350000
KS ci ratio: 2.212036e-01	ci left: 1.188440e-04	ci right 1.487937e-04	k: 313	n:2350000
MAGEL2   2350000 perm   2664 sec   (882 perm/sec)   p_kst 1.331915e-04   p_cons 6.903932e-01   p_joint 3.540426e-04

Joint ci ratio: 1.354710e-01	ci left: 3.306323e-04	ci right 3.790820e-04	k: 836	n:2360000
Cons ci ratio: 1.708808e-03	ci left: 6.897966e-01	ci right 6.909767e-01	k: 1629313	n:2360000
KS ci ratio: 2.208522e-01	ci left: 1.187406e-04	ci right 1.486104e-04	k: 314	n:2360000
MAGEL2   2360000 perm   2684 sec   (879 perm/sec)   p_kst 1.330508e-04   p_cons 6.903869e-01   p_joint 3.542373e-04

Joint ci ratio: 1.352289e-01	ci left: 3.304602e-04	ci right 3.787912e-04	k: 839	n:2370000
Cons ci ratio: 1.705289e-03	ci left: 6.897755e-01	ci right 6.909532e-01	k: 1636164	n:2370000
KS ci ratio: 2.205025e-01	ci left: 1.186383e-04	ci right 1.484285e-04	k: 315	n:2370000
MAGEL2   2370000 perm   2705 sec   (876 perm/sec)   p_kst 1.329114e-04   p_cons 6.903646e-01   p_joint 3.540084e-04

Joint ci ratio: 1.348281e-01	ci left: 3.311016e-04	ci right 3.793714e-04	k: 844	n:2380000
Cons ci ratio: 1.701790e-03	ci left: 6.897546e-01	ci right 6.909298e-01	k: 1643015	n:2380000
KS ci ratio: 2.198080e-01	ci left: 1.189338e-04	ci right 1.486915e-04	k: 317	n:2380000
MAGEL2   2380000 perm   2725 sec   (873 perm/sec)   p_kst 1.331933e-04   p_cons 6.903424e-01   p_joint 3.546218e-04

Joint ci ratio: 1.346689e-01	ci left: 3.305249e-04	ci right 3.786491e-04	k: 846	n:2390000
Cons ci ratio: 1.698277e-03	ci left: 6.897431e-01	ci right 6.909159e-01	k: 1649888	n:2390000
KS ci ratio: 2.194632e-01	ci left: 1.188315e-04	ci right 1.485107e-04	k: 318	n:2390000
MAGEL2   2390000 perm   2746 sec   (870 perm/sec)   p_kst 1.330544e-04   p_cons 6.903297e-01   p_joint 3.539749e-04

Joint ci ratio: 1.142329e-01	ci left: 4.623977e-04	ci right 5.188189e-04	k: 1176	n:2400000
Cons ci ratio: 1.694724e-03	ci left: 6.897471e-01	ci right 6.909174e-01	k: 1656798	n:2400000
KS ci ratio: 2.187784e-01	ci left: 1.191240e-04	ci right 1.487709e-04	k: 320	n:2400000
MAGEL2   2400000 perm   2766 sec   (868 perm/sec)   p_kst 1.333333e-04   p_cons 6.903325e-01   p_joint 4.900000e-04

Joint ci ratio: 1.140876e-01	ci left: 4.616883e-04	ci right 5.179465e-04	k: 1179	n:2410000
Cons ci ratio: 1.691187e-03	ci left: 6.897528e-01	ci right 6.909206e-01	k: 1663712	n:2410000
KS ci ratio: 2.187784e-01	ci left: 1.186297e-04	ci right 1.481536e-04	k: 320	n:2410000
MAGEL2   2410000 perm   2786 sec   (865 perm/sec)   p_kst 1.327801e-04   p_cons 6.903369e-01   p_joint 4.892116e-04

Joint ci ratio: 1.137028e-01	ci left: 4.629921e-04	ci right 5.192061e-04	k: 1187	n:2420000
Cons ci ratio: 1.687660e-03	ci left: 6.897613e-01	ci right 6.909267e-01	k: 1670633	n:2420000
KS ci ratio: 2.184385e-01	ci left: 1.185301e-04	ci right 1.479772e-04	k: 321	n:2420000
MAGEL2   2420000 perm   2807 sec   (862 perm/sec)   p_kst 1.326446e-04   p_cons 6.903442e-01   p_joint 4.904959e-04

Joint ci ratio: 1.134167e-01	ci left: 4.634858e-04	ci right 5.196087e-04	k: 1193	n:2430000
Cons ci ratio: 1.684081e-03	ci left: 6.897886e-01	ci right 6.909517e-01	k: 1677600	n:2430000
KS ci ratio: 2.170941e-01	ci left: 1.195986e-04	ci right 1.491040e-04	k: 325	n:2430000
MAGEL2   2430000 perm   2828 sec   (859 perm/sec)   p_kst 1.337449e-04   p_cons 6.903704e-01   p_joint 4.909465e-04

Joint ci ratio: 1.131800e-01	ci left: 4.635774e-04	ci right 5.195864e-04	k: 1198	n:2440000
Cons ci ratio: 1.680616e-03	ci left: 6.897924e-01	ci right 6.909530e-01	k: 1684510	n:2440000
KS ci ratio: 2.164312e-01	ci left: 1.198837e-04	ci right 1.493570e-04	k: 327	n:2440000
MAGEL2   2440000 perm   2849 sec   (857 perm/sec)   p_kst 1.340164e-04   p_cons 6.903730e-01   p_joint 4.909836e-04

Joint ci ratio: 1.136553e-01	ci left: 4.577193e-04	ci right 5.132684e-04	k: 1188	n:2450000
Cons ci ratio: 1.677120e-03	ci left: 6.898096e-01	ci right 6.909679e-01	k: 1691453	n:2450000
KS ci ratio: 2.161020e-01	ci left: 1.197804e-04	ci right 1.491776e-04	k: 328	n:2450000
MAGEL2   2450000 perm   2870 sec   (854 perm/sec)   p_kst 1.338776e-04   p_cons 6.903890e-01   p_joint 4.848980e-04

Joint ci ratio: 1.132748e-01	ci left: 4.590184e-04	ci right 5.145262e-04	k: 1196	n:2460000
Cons ci ratio: 1.673630e-03	ci left: 6.898308e-01	ci right 6.909867e-01	k: 1698406	n:2460000
KS ci ratio: 2.157744e-01	ci left: 1.196780e-04	ci right 1.489997e-04	k: 329	n:2460000
MAGEL2   2460000 perm   2892 sec   (851 perm/sec)   p_kst 1.337398e-04   p_cons 6.904089e-01   p_joint 4.861789e-04

Joint ci ratio: 1.131331e-01	ci left: 4.583402e-04	ci right 5.136920e-04	k: 1199	n:2470000
Cons ci ratio: 1.670275e-03	ci left: 6.898226e-01	ci right 6.909761e-01	k: 1705287	n:2470000
KS ci ratio: 2.151234e-01	ci left: 1.199595e-04	ci right 1.492498e-04	k: 331	n:2470000
MAGEL2   2470000 perm   2913 sec   (848 perm/sec)   p_kst 1.340081e-04   p_cons 6.903996e-01   p_joint 4.854251e-04

Joint ci ratio: 1.128513e-01	ci left: 4.588431e-04	ci right 5.141084e-04	k: 1205	n:2480000
Cons ci ratio: 1.666882e-03	ci left: 6.898294e-01	ci right 6.909806e-01	k: 1712205	n:2480000
KS ci ratio: 2.144784e-01	ci left: 1.202389e-04	ci right 1.494977e-04	k: 333	n:2480000
MAGEL2   2480000 perm   2934 sec   (845 perm/sec)   p_kst 1.342742e-04   p_cons 6.904052e-01   p_joint 4.858871e-04

Joint ci ratio: 1.125252e-01	ci left: 4.597323e-04	ci right 5.149341e-04	k: 1212	n:2490000
Cons ci ratio: 1.663446e-03	ci left: 6.898527e-01	ci right 6.910015e-01	k: 1719164	n:2490000
KS ci ratio: 2.138391e-01	ci left: 1.205161e-04	ci right 1.497436e-04	k: 335	n:2490000
MAGEL2   2490000 perm   2954 sec   (843 perm/sec)   p_kst 1.345382e-04   p_cons 6.904273e-01   p_joint 4.867470e-04

Joint ci ratio: 1.122479e-01	ci left: 4.602259e-04	ci right 5.153418e-04	k: 1218	n:2500000
Cons ci ratio: 1.660069e-03	ci left: 6.898657e-01	ci right 6.910123e-01	k: 1726098	n:2500000
KS ci ratio: 2.135216e-01	ci left: 1.204127e-04	ci right 1.495660e-04	k: 336	n:2500000
MAGEL2   2500000 perm   2975 sec   (840 perm/sec)   p_kst 1.344000e-04   p_cons 6.904392e-01   p_joint 4.872000e-04

Joint ci ratio: 1.120184e-01	ci left: 4.603285e-04	ci right 5.153366e-04	k: 1223	n:2510000
Cons ci ratio: 1.656747e-03	ci left: 6.898699e-01	ci right 6.910141e-01	k: 1733010	n:2510000
KS ci ratio: 2.135216e-01	ci left: 1.199329e-04	ci right 1.489701e-04	k: 336	n:2510000
MAGEL2   2510000 perm   2996 sec   (838 perm/sec)   p_kst 1.338645e-04   p_cons 6.904422e-01   p_joint 4.872510e-04

Joint ci ratio: 1.118814e-01	ci left: 4.596590e-04	ci right 5.145154e-04	k: 1226	n:2520000
Cons ci ratio: 1.653396e-03	ci left: 6.898867e-01	ci right 6.910287e-01	k: 1739954	n:2520000
KS ci ratio: 2.135217e-01	ci left: 1.194570e-04	ci right 1.483789e-04	k: 336	n:2520000
MAGEL2   2520000 perm   3017 sec   (835 perm/sec)   p_kst 1.333333e-04   p_cons 6.904579e-01   p_joint 4.865079e-04

Joint ci ratio: 1.116541e-01	ci left: 4.597632e-04	ci right 5.145132e-04	k: 1231	n:2530000
Cons ci ratio: 1.650212e-03	ci left: 6.898655e-01	ci right 6.910052e-01	k: 1746802	n:2530000
KS ci ratio: 2.132056e-01	ci left: 1.193590e-04	ci right 1.482088e-04	k: 337	n:2530000
MAGEL2   2530000 perm   3039 sec   (833 perm/sec)   p_kst 1.332016e-04   p_cons 6.904356e-01   p_joint 4.865613e-04

Joint ci ratio: 1.117450e-01	ci left: 4.571876e-04	ci right 5.116782e-04	k: 1229	n:2540000
Cons ci ratio: 1.647032e-03	ci left: 6.898480e-01	ci right 6.909855e-01	k: 1753659	n:2540000
KS ci ratio: 2.125776e-01	ci left: 1.196345e-04	ci right 1.484546e-04	k: 339	n:2540000
MAGEL2   2540000 perm   3060 sec   (830 perm/sec)   p_kst 1.334646e-04   p_cons 6.904169e-01   p_joint 4.838583e-04

Joint ci ratio: 1.114735e-01	ci left: 4.576820e-04	ci right 5.120902e-04	k: 1235	n:2550000
Cons ci ratio: 1.643828e-03	ci left: 6.898416e-01	ci right 6.909768e-01	k: 1760544	n:2550000
KS ci ratio: 2.122657e-01	ci left: 1.195366e-04	ci right 1.482854e-04	k: 340	n:2550000
MAGEL2   2550000 perm   3083 sec   (827 perm/sec)   p_kst 1.333333e-04   p_cons 6.904094e-01   p_joint 4.843137e-04

Joint ci ratio: 1.113385e-01	ci left: 4.570334e-04	ci right 5.112944e-04	k: 1238	n:2560000
Cons ci ratio: 1.640501e-03	ci left: 6.898723e-01	ci right 6.910054e-01	k: 1767524	n:2560000
KS ci ratio: 2.119551e-01	ci left: 1.194395e-04	ci right 1.481175e-04	k: 341	n:2560000
MAGEL2   2560000 perm   3105 sec   (825 perm/sec)   p_kst 1.332031e-04   p_cons 6.904391e-01   p_joint 4.835937e-04

Joint ci ratio: 1.110252e-01	ci left: 4.579031e-04	ci right 5.121044e-04	k: 1245	n:2570000
Cons ci ratio: 1.637351e-03	ci left: 6.898616e-01	ci right 6.909924e-01	k: 1774398	n:2570000
KS ci ratio: 2.113380e-01	ci left: 1.197118e-04	ci right 1.483606e-04	k: 343	n:2570000
MAGEL2   2570000 perm   3126 sec   (822 perm/sec)   p_kst 1.334630e-04   p_cons 6.904272e-01   p_joint 4.844358e-04

Joint ci ratio: 1.106263e-01	ci left: 4.595200e-04	ci right 5.137045e-04	k: 1254	n:2580000
Cons ci ratio: 1.634086e-03	ci left: 6.898859e-01	ci right 6.910145e-01	k: 1781362	n:2580000
KS ci ratio: 2.107263e-01	ci left: 1.199820e-04	ci right 1.486017e-04	k: 345	n:2580000
MAGEL2   2580000 perm   3149 sec   (819 perm/sec)   p_kst 1.337209e-04   p_cons 6.904504e-01   p_joint 4.860465e-04

Joint ci ratio: 1.104944e-01	ci left: 4.588720e-04	ci right 5.129114e-04	k: 1257	n:2590000
Cons ci ratio: 1.630841e-03	ci left: 6.899099e-01	ci right 6.910364e-01	k: 1788326	n:2590000
KS ci ratio: 2.107264e-01	ci left: 1.195187e-04	ci right 1.480279e-04	k: 345	n:2590000
MAGEL2   2590000 perm   3171 sec   (817 perm/sec)   p_kst 1.332046e-04   p_cons 6.904734e-01   p_joint 4.853282e-04

Joint ci ratio: 1.104067e-01	ci left: 4.578551e-04	ci right 5.117291e-04	k: 1259	n:2600000
Cons ci ratio: 1.627703e-03	ci left: 6.899107e-01	ci right 6.910350e-01	k: 1795230	n:2600000
KS ci ratio: 2.107264e-01	ci left: 1.190591e-04	ci right 1.474586e-04	k: 345	n:2600000
MAGEL2   2600000 perm   3194 sec   (814 perm/sec)   p_kst 1.326923e-04   p_cons 6.904731e-01   p_joint 4.842308e-04

Joint ci ratio: 1.101447e-01	ci left: 4.583363e-04	ci right 5.121307e-04	k: 1265	n:2610000
Cons ci ratio: 1.624548e-03	ci left: 6.899207e-01	ci right 6.910428e-01	k: 1802158	n:2610000
KS ci ratio: 2.101200e-01	ci left: 1.193288e-04	ci right 1.477002e-04	k: 347	n:2610000
MAGEL2   2610000 perm   3216 sec   (811 perm/sec)   p_kst 1.329502e-04   p_cons 6.904820e-01   p_joint 4.846743e-04

Joint ci ratio: 1.097983e-01	ci left: 4.595564e-04	ci right 5.133134e-04	k: 1273	n:2620000
Cons ci ratio: 1.621511e-03	ci left: 6.899043e-01	ci right 6.910243e-01	k: 1809017	n:2620000
KS ci ratio: 2.095188e-01	ci left: 1.195966e-04	ci right 1.479399e-04	k: 349	n:2620000
MAGEL2   2620000 perm   3239 sec   (809 perm/sec)   p_kst 1.332061e-04   p_cons 6.904645e-01   p_joint 4.858779e-04

Joint ci ratio: 1.094124e-01	ci left: 4.611373e-04	ci right 5.148774e-04	k: 1282	n:2630000
Cons ci ratio: 1.618485e-03	ci left: 6.898895e-01	ci right 6.910074e-01	k: 1815880	n:2630000
KS ci ratio: 2.086265e-01	ci left: 1.202228e-04	ci right 1.485777e-04	k: 352	n:2630000
MAGEL2   2630000 perm   3262 sec   (806 perm/sec)   p_kst 1.338403e-04   p_cons 6.904487e-01   p_joint 4.874525e-04

Joint ci ratio: 1.091999e-01	ci left: 4.612327e-04	ci right 5.148728e-04	k: 1287	n:2640000
Cons ci ratio: 1.615379e-03	ci left: 6.899006e-01	ci right 6.910164e-01	k: 1822811	n:2640000
KS ci ratio: 2.086266e-01	ci left: 1.197674e-04	ci right 1.480149e-04	k: 352	n:2640000
MAGEL2   2640000 perm   3285 sec   (804 perm/sec)   p_kst 1.333333e-04   p_cons 6.904587e-01   p_joint 4.875000e-04

Joint ci ratio: 1.103634e-01	ci left: 4.495831e-04	ci right 5.024618e-04	k: 1260	n:2650000
Cons ci ratio: 1.612348e-03	ci left: 6.898966e-01	ci right 6.910102e-01	k: 1829702	n:2650000
KS ci ratio: 2.080380e-01	ci left: 1.200308e-04	ci right 1.482504e-04	k: 354	n:2650000
MAGEL2   2650000 perm   3308 sec   (801 perm/sec)   p_kst 1.335849e-04   p_cons 6.904536e-01   p_joint 4.754717e-04

Joint ci ratio: 1.109816e-01	ci left: 4.427754e-04	ci right 4.951641e-04	k: 1246	n:2660000
Cons ci ratio: 1.609230e-03	ci left: 6.899200e-01	ci right 6.910315e-01	k: 1836666	n:2660000
KS ci ratio: 2.077456e-01	ci left: 1.199360e-04	ci right 1.480885e-04	k: 355	n:2660000
MAGEL2   2660000 perm   3331 sec   (798 perm/sec)   p_kst 1.334586e-04   p_cons 6.904759e-01   p_joint 4.684211e-04

Joint ci ratio: 1.105832e-01	ci left: 4.443945e-04	ci right 4.967737e-04	k: 1255	n:2670000
Cons ci ratio: 1.606255e-03	ci left: 6.899099e-01	ci right 6.910193e-01	k: 1843541	n:2670000
KS ci ratio: 2.071645e-01	ci left: 1.201969e-04	ci right 1.483218e-04	k: 357	n:2670000
MAGEL2   2670000 perm   3354 sec   (796 perm/sec)   p_kst 1.337079e-04   p_cons 6.904648e-01   p_joint 4.700375e-04

Joint ci ratio: 1.110263e-01	ci left: 4.391083e-04	ci right 4.910854e-04	k: 1245	n:2680000
Cons ci ratio: 1.603274e-03	ci left: 6.899062e-01	ci right 6.910135e-01	k: 1850433	n:2680000
KS ci ratio: 2.065882e-01	ci left: 1.204560e-04	ci right 1.485532e-04	k: 359	n:2680000
MAGEL2   2680000 perm   3377 sec   (794 perm/sec)   p_kst 1.339552e-04   p_cons 6.904601e-01   p_joint 4.645522e-04

Joint ci ratio: 1.106715e-01	ci left: 4.403675e-04	ci right 4.923162e-04	k: 1253	n:2690000
Cons ci ratio: 1.600212e-03	ci left: 6.899282e-01	ci right 6.910335e-01	k: 1857394	n:2690000
KS ci ratio: 2.057327e-01	ci left: 1.210659e-04	ci right 1.491737e-04	k: 362	n:2690000
MAGEL2   2690000 perm   3400 sec   (791 perm/sec)   p_kst 1.345725e-04   p_cons 6.904810e-01   p_joint 4.657993e-04

Joint ci ratio: 1.104077e-01	ci left: 4.408973e-04	ci right 4.927765e-04	k: 1259	n:2700000
Cons ci ratio: 1.597312e-03	ci left: 6.899115e-01	ci right 6.910147e-01	k: 1864251	n:2700000
KS ci ratio: 2.057328e-01	ci left: 1.206175e-04	ci right 1.486212e-04	k: 362	n:2700000
MAGEL2   2700000 perm   3423 sec   (789 perm/sec)   p_kst 1.340741e-04   p_cons 6.904633e-01   p_joint 4.662963e-04

Joint ci ratio: 1.100588e-01	ci left: 4.421410e-04	ci right 4.939915e-04	k: 1267	n:2710000
Cons ci ratio: 1.594350e-03	ci left: 6.899160e-01	ci right 6.910172e-01	k: 1871165	n:2710000
KS ci ratio: 2.051683e-01	ci left: 1.208725e-04	ci right 1.488487e-04	k: 364	n:2710000
MAGEL2   2710000 perm   3446 sec   (786 perm/sec)   p_kst 1.343173e-04   p_cons 6.904668e-01   p_joint 4.675277e-04

Joint ci ratio: 1.112951e-01	ci left: 4.305062e-04	ci right 4.815965e-04	k: 1239	n:2720000
Cons ci ratio: 1.591405e-03	ci left: 6.899201e-01	ci right 6.910192e-01	k: 1878078	n:2720000
KS ci ratio: 2.046085e-01	ci left: 1.211257e-04	ci right 1.490745e-04	k: 366	n:2720000
MAGEL2   2720000 perm   3470 sec   (784 perm/sec)   p_kst 1.345588e-04   p_cons 6.904699e-01   p_joint 4.555147e-04

Joint ci ratio: 1.111608e-01	ci left: 4.299976e-04	ci right 4.809619e-04	k: 1242	n:2730000
Cons ci ratio: 1.588403e-03	ci left: 6.899439e-01	ci right 6.910410e-01	k: 1885045	n:2730000
KS ci ratio: 2.035024e-01	ci left: 1.220723e-04	ci right 1.500684e-04	k: 370	n:2730000
MAGEL2   2730000 perm   3493 sec   (782 perm/sec)   p_kst 1.355311e-04   p_cons 6.904927e-01   p_joint 4.549451e-04

Joint ci ratio: 1.109379e-01	ci left: 4.302024e-04	ci right 4.810821e-04	k: 1247	n:2740000
Cons ci ratio: 1.585566e-03	ci left: 6.899274e-01	ci right 6.910226e-01	k: 1891902	n:2740000
KS ci ratio: 2.032287e-01	ci left: 1.219732e-04	ci right 1.499042e-04	k: 371	n:2740000
MAGEL2   2740000 perm   3516 sec   (779 perm/sec)   p_kst 1.354015e-04   p_cons 6.904752e-01   p_joint 4.551095e-04

Joint ci ratio: 1.108048e-01	ci left: 4.296986e-04	ci right 4.804538e-04	k: 1250	n:2750000
Cons ci ratio: 1.582701e-03	ci left: 6.899230e-01	ci right 6.910162e-01	k: 1898792	n:2750000
KS ci ratio: 2.029561e-01	ci left: 1.218748e-04	ci right 1.497412e-04	k: 372	n:2750000
MAGEL2   2750000 perm   3540 sec   (777 perm/sec)   p_kst 1.352727e-04   p_cons 6.904698e-01   p_joint 4.545455e-04

Joint ci ratio: 1.107164e-01	ci left: 4.288463e-04	ci right 4.794578e-04	k: 1252	n:2760000
Cons ci ratio: 1.579939e-03	ci left: 6.898948e-01	ci right 6.909860e-01	k: 1905616	n:2760000
KS ci ratio: 2.029562e-01	ci left: 1.214332e-04	ci right 1.491987e-04	k: 372	n:2760000
MAGEL2   2760000 perm   3564 sec   (774 perm/sec)   p_kst 1.347826e-04   p_cons 6.904406e-01   p_joint 4.536232e-04

Joint ci ratio: 1.105401e-01	ci left: 4.287022e-04	ci right 4.792109e-04	k: 1256	n:2770000
Cons ci ratio: 1.577025e-03	ci left: 6.899119e-01	ci right 6.910011e-01	k: 1912565	n:2770000
KS ci ratio: 2.024142e-01	ci left: 1.216802e-04	ci right 1.494186e-04	k: 374	n:2770000
MAGEL2   2770000 perm   3587 sec   (772 perm/sec)   p_kst 1.350181e-04   p_cons 6.904567e-01   p_joint 4.534296e-04

Joint ci ratio: 1.102772e-01	ci left: 4.292588e-04	ci right 4.797049e-04	k: 1262	n:2780000
Cons ci ratio: 1.574224e-03	ci left: 6.899026e-01	ci right 6.909898e-01	k: 1919441	n:2780000
KS ci ratio: 2.018765e-01	ci left: 1.219255e-04	ci right 1.496370e-04	k: 376	n:2780000
MAGEL2   2780000 perm   3611 sec   (770 perm/sec)   p_kst 1.352518e-04   p_cons 6.904464e-01   p_joint 4.539568e-04

Joint ci ratio: 1.110719e-01	ci left: 4.214471e-04	ci right 4.713555e-04	k: 1244	n:2790000
Cons ci ratio: 1.571430e-03	ci left: 6.898955e-01	ci right 6.909808e-01	k: 1926323	n:2790000
KS ci ratio: 2.010780e-01	ci left: 1.225095e-04	ci right 1.502301e-04	k: 379	n:2790000
MAGEL2   2790000 perm   3635 sec   (767 perm/sec)   p_kst 1.358423e-04   p_cons 6.904384e-01   p_joint 4.458781e-04

Joint ci ratio: 1.108496e-01	ci left: 4.216781e-04	ci right 4.715074e-04	k: 1249	n:2800000
Cons ci ratio: 1.568724e-03	ci left: 6.898685e-01	ci right 6.909519e-01	k: 1933149	n:2800000
KS ci ratio: 2.010781e-01	ci left: 1.220720e-04	ci right 1.496935e-04	k: 379	n:2800000
MAGEL2   2800000 perm   3659 sec   (765 perm/sec)   p_kst 1.353571e-04   p_cons 6.904104e-01   p_joint 4.460714e-04

Joint ci ratio: 1.131837e-01	ci left: 4.025362e-04	ci right 4.511720e-04	k: 1198	n:2810000
Cons ci ratio: 1.565939e-03	ci left: 6.898669e-01	ci right 6.909484e-01	k: 1940046	n:2810000
KS ci ratio: 2.005510e-01	ci left: 1.223135e-04	ci right 1.499083e-04	k: 381	n:2810000
MAGEL2   2810000 perm   3683 sec   (763 perm/sec)   p_kst 1.355872e-04   p_cons 6.904078e-01   p_joint 4.263345e-04

Joint ci ratio: 1.129484e-01	ci left: 4.028317e-04	ci right 4.513952e-04	k: 1203	n:2820000
Cons ci ratio: 1.563131e-03	ci left: 6.898760e-01	ci right 6.909555e-01	k: 1946973	n:2820000
KS ci ratio: 2.000280e-01	ci left: 1.225535e-04	ci right 1.501214e-04	k: 383	n:2820000
MAGEL2   2820000 perm   3707 sec   (761 perm/sec)   p_kst 1.358156e-04   p_cons 6.904160e-01   p_joint 4.265957e-04

Joint ci ratio: 1.134207e-01	ci left: 3.979747e-04	ci right 4.461667e-04	k: 1193	n:2830000
Cons ci ratio: 1.560359e-03	ci left: 6.898790e-01	ci right 6.909566e-01	k: 1953883	n:2830000
KS ci ratio: 1.995091e-01	ci left: 1.227918e-04	ci right 1.503330e-04	k: 385	n:2830000
MAGEL2   2830000 perm   3731 sec   (758 perm/sec)   p_kst 1.360424e-04   p_cons 6.904180e-01   p_joint 4.215548e-04

Joint ci ratio: 1.132785e-01	ci left: 3.975997e-04	ci right 4.456820e-04	k: 1196	n:2840000
Cons ci ratio: 1.557590e-03	ci left: 6.898852e-01	ci right 6.909609e-01	k: 1960802	n:2840000
KS ci ratio: 1.992512e-01	ci left: 1.226939e-04	ci right 1.501733e-04	k: 386	n:2840000
MAGEL2   2840000 perm   3756 sec   (756 perm/sec)   p_kst 1.359155e-04   p_cons 6.904232e-01   p_joint 4.211268e-04

Joint ci ratio: 1.135160e-01	ci left: 3.945000e-04	ci right 4.423141e-04	k: 1191	n:2850000
Cons ci ratio: 1.554814e-03	ci left: 6.898976e-01	ci right 6.909715e-01	k: 1967739	n:2850000
KS ci ratio: 1.989943e-01	ci left: 1.225968e-04	ci right 1.500147e-04	k: 387	n:2850000
MAGEL2   2850000 perm   3780 sec   (754 perm/sec)   p_kst 1.357895e-04   p_cons 6.904347e-01   p_joint 4.178947e-04

Joint ci ratio: 1.150222e-01	ci left: 3.825911e-04	ci right 4.296189e-04	k: 1160	n:2860000
Cons ci ratio: 1.552082e-03	ci left: 6.899016e-01	ci right 6.909735e-01	k: 1974652	n:2860000
KS ci ratio: 1.989943e-01	ci left: 1.221682e-04	ci right 1.494902e-04	k: 387	n:2860000
MAGEL2   2860000 perm   3805 sec   (752 perm/sec)   p_kst 1.353147e-04   p_cons 6.904378e-01   p_joint 4.055944e-04

Joint ci ratio: 1.148739e-01	ci left: 3.822733e-04	ci right 4.291973e-04	k: 1163	n:2870000
Cons ci ratio: 1.549374e-03	ci left: 6.899031e-01	ci right 6.909732e-01	k: 1981558	n:2870000
KS ci ratio: 1.984834e-01	ci left: 1.224047e-04	ci right 1.497008e-04	k: 389	n:2870000
MAGEL2   2870000 perm   3829 sec   (749 perm/sec)   p_kst 1.355401e-04   p_cons 6.904383e-01   p_joint 4.052265e-04

Joint ci ratio: 1.021807e-01	ci left: 4.846608e-04	ci right 5.371853e-04	k: 1470	n:2880000
Cons ci ratio: 1.546662e-03	ci left: 6.899095e-01	ci right 6.909777e-01	k: 1988478	n:2880000
KS ci ratio: 1.979764e-01	ci left: 1.226396e-04	ci right 1.499099e-04	k: 391	n:2880000
MAGEL2   2880000 perm   3854 sec   (747 perm/sec)   p_kst 1.357639e-04   p_cons 6.904438e-01   p_joint 5.104167e-04

Joint ci ratio: 1.020420e-01	ci left: 4.843325e-04	ci right 5.367459e-04	k: 1474	n:2890000
Cons ci ratio: 1.544084e-03	ci left: 6.898825e-01	ci right 6.909489e-01	k: 1995302	n:2890000
KS ci ratio: 1.977244e-01	ci left: 1.225442e-04	ci right 1.497543e-04	k: 392	n:2890000
MAGEL2   2890000 perm   3879 sec   (745 perm/sec)   p_kst 1.356401e-04   p_cons 6.904159e-01   p_joint 5.100346e-04

Joint ci ratio: 1.020075e-01	ci left: 4.829984e-04	ci right 5.352487e-04	k: 1475	n:2900000
Cons ci ratio: 1.541426e-03	ci left: 6.898817e-01	ci right 6.909462e-01	k: 2002201	n:2900000
KS ci ratio: 1.974733e-01	ci left: 1.224494e-04	ci right 1.495998e-04	k: 393	n:2900000
MAGEL2   2900000 perm   3904 sec   (743 perm/sec)   p_kst 1.355172e-04   p_cons 6.904141e-01   p_joint 5.086207e-04

Joint ci ratio: 1.018352e-01	ci left: 4.830131e-04	ci right 5.351714e-04	k: 1480	n:2910000
Cons ci ratio: 1.538769e-03	ci left: 6.898843e-01	ci right 6.909470e-01	k: 2009110	n:2910000
KS ci ratio: 1.974733e-01	ci left: 1.220286e-04	ci right 1.490857e-04	k: 393	n:2910000
MAGEL2   2910000 perm   3928 sec   (741 perm/sec)   p_kst 1.350515e-04   p_cons 6.904158e-01   p_joint 5.085911e-04

Joint ci ratio: 1.015954e-01	ci left: 4.836952e-04	ci right 5.357968e-04	k: 1487	n:2920000
Cons ci ratio: 1.536182e-03	ci left: 6.898714e-01	ci right 6.909323e-01	k: 2015974	n:2920000
KS ci ratio: 1.967258e-01	ci left: 1.225874e-04	ci right 1.496532e-04	k: 396	n:2920000
MAGEL2   2920000 perm   3953 sec   (739 perm/sec)   p_kst 1.356164e-04   p_cons 6.904021e-01   p_joint 5.092466e-04

Joint ci ratio: 1.012894e-01	ci left: 4.850381e-04	ci right 5.371177e-04	k: 1496	n:2930000
Cons ci ratio: 1.533551e-03	ci left: 6.898744e-01	ci right 6.909335e-01	k: 2022884	n:2930000
KS ci ratio: 1.962321e-01	ci left: 1.228180e-04	ci right 1.498585e-04	k: 398	n:2930000
MAGEL2   2930000 perm   3978 sec   (737 perm/sec)   p_kst 1.358362e-04   p_cons 6.904041e-01   p_joint 5.105802e-04

Joint ci ratio: 1.010870e-01	ci left: 4.853775e-04	ci right 5.373832e-04	k: 1502	n:2940000
Cons ci ratio: 1.530895e-03	ci left: 6.898878e-01	ci right 6.909451e-01	k: 2029825	n:2940000
KS ci ratio: 1.957421e-01	ci left: 1.230471e-04	ci right 1.500624e-04	k: 400	n:2940000
MAGEL2   2940000 perm   4003 sec   (734 perm/sec)   p_kst 1.360544e-04   p_cons 6.904167e-01   p_joint 5.108844e-04

Joint ci ratio: 1.019389e-01	ci left: 4.754726e-04	ci right 5.268721e-04	k: 1477	n:2950000
Cons ci ratio: 1.528312e-03	ci left: 6.898850e-01	ci right 6.909404e-01	k: 2036718	n:2950000
KS ci ratio: 1.957421e-01	ci left: 1.226300e-04	ci right 1.495538e-04	k: 400	n:2950000
MAGEL2   2950000 perm   4028 sec   (732 perm/sec)   p_kst 1.355932e-04   p_cons 6.904129e-01   p_joint 5.006780e-04

Joint ci ratio: 1.019390e-01	ci left: 4.738663e-04	ci right 5.250921e-04	k: 1477	n:2960000
Cons ci ratio: 1.525644e-03	ci left: 6.899095e-01	ci right 6.909631e-01	k: 2043692	n:2960000
KS ci ratio: 1.957422e-01	ci left: 1.222157e-04	ci right 1.490485e-04	k: 400	n:2960000
MAGEL2   2960000 perm   4052 sec   (730 perm/sec)   p_kst 1.351351e-04   p_cons 6.904365e-01   p_joint 4.989865e-04

Joint ci ratio: 1.017327e-01	ci left: 4.742395e-04	ci right 5.253958e-04	k: 1483	n:2970000
Cons ci ratio: 1.523045e-03	ci left: 6.899183e-01	ci right 6.909702e-01	k: 2050620	n:2970000
KS ci ratio: 1.952558e-01	ci left: 1.224447e-04	ci right 1.492530e-04	k: 402	n:2970000
MAGEL2   2970000 perm   4077 sec   (728 perm/sec)   p_kst 1.353535e-04   p_cons 6.904444e-01   p_joint 4.993266e-04

Joint ci ratio: 1.047418e-01	ci left: 4.451875e-04	ci right 4.947178e-04	k: 1399	n:2980000
Cons ci ratio: 1.520516e-03	ci left: 6.899110e-01	ci right 6.909611e-01	k: 2057500	n:2980000
KS ci ratio: 1.952559e-01	ci left: 1.220338e-04	ci right 1.487521e-04	k: 402	n:2980000
MAGEL2   2980000 perm   4102 sec   (726 perm/sec)   p_kst 1.348993e-04   p_cons 6.904362e-01   p_joint 4.694631e-04

Joint ci ratio: 1.045925e-01	ci left: 4.450013e-04	ci right 4.944360e-04	k: 1403	n:2990000
Cons ci ratio: 1.518104e-03	ci left: 6.898746e-01	ci right 6.909230e-01	k: 2064293	n:2990000
KS ci ratio: 1.950141e-01	ci left: 1.219438e-04	ci right 1.486054e-04	k: 403	n:2990000
MAGEL2   2990000 perm   4128 sec   (724 perm/sec)   p_kst 1.347826e-04   p_cons 6.903990e-01   p_joint 4.692308e-04

Joint ci ratio: 1.043697e-01	ci left: 4.454657e-04	ci right 4.948401e-04	k: 1409	n:3000000
Cons ci ratio: 1.515579e-03	ci left: 6.898735e-01	ci right 6.909201e-01	k: 2071191	n:3000000
KS ci ratio: 1.947732e-01	ci left: 1.218543e-04	ci right 1.484596e-04	k: 404	n:3000000
MAGEL2   3000000 perm   4153 sec   (722 perm/sec)   p_kst 1.346667e-04   p_cons 6.903970e-01   p_joint 4.696667e-04

Joint ci ratio: 1.041851e-01	ci left: 4.456036e-04	ci right 4.949006e-04	k: 1414	n:3010000
Cons ci ratio: 1.513147e-03	ci left: 6.898494e-01	ci right 6.908944e-01	k: 2078020	n:3010000
KS ci ratio: 1.942940e-01	ci left: 1.220816e-04	ci right 1.486632e-04	k: 406	n:3010000
MAGEL2   3010000 perm   4178 sec   (720 perm/sec)   p_kst 1.348837e-04   p_cons 6.903721e-01   p_joint 4.697674e-04

Joint ci ratio: 1.040382e-01	ci left: 4.454181e-04	ci right 4.946208e-04	k: 1418	n:3020000
Cons ci ratio: 1.510676e-03	ci left: 6.898401e-01	ci right 6.908834e-01	k: 2084893	n:3020000
KS ci ratio: 1.940558e-01	ci left: 1.219924e-04	ci right 1.485181e-04	k: 407	n:3020000
MAGEL2   3020000 perm   4203 sec   (719 perm/sec)   p_kst 1.347682e-04   p_cons 6.903619e-01   p_joint 4.695364e-04

Joint ci ratio: 1.041117e-01	ci left: 4.433051e-04	ci right 4.923112e-04	k: 1416	n:3030000
Cons ci ratio: 1.508208e-03	ci left: 6.898332e-01	ci right 6.908747e-01	k: 2091773	n:3030000
KS ci ratio: 1.940558e-01	ci left: 1.215898e-04	ci right 1.480280e-04	k: 407	n:3030000
MAGEL2   3030000 perm   4228 sec   (717 perm/sec)   p_kst 1.343234e-04   p_cons 6.903541e-01   p_joint 4.673267e-04

Joint ci ratio: 1.040017e-01	ci left: 4.428081e-04	ci right 4.917043e-04	k: 1419	n:3040000
Cons ci ratio: 1.505709e-03	ci left: 6.898388e-01	ci right 6.908786e-01	k: 2098691	n:3040000
KS ci ratio: 1.938185e-01	ci left: 1.215028e-04	ci right 1.478859e-04	k: 408	n:3040000
MAGEL2   3040000 perm   4253 sec   (715 perm/sec)   p_kst 1.342105e-04   p_cons 6.903589e-01   p_joint 4.667763e-04

Joint ci ratio: 1.038191e-01	ci left: 4.429530e-04	ci right 4.917741e-04	k: 1424	n:3050000
Cons ci ratio: 1.503238e-03	ci left: 6.898398e-01	ci right 6.908779e-01	k: 2105595	n:3050000
KS ci ratio: 1.931115e-01	ci left: 1.220404e-04	ci right 1.484322e-04	k: 411	n:3050000
MAGEL2   3050000 perm   4279 sec   (713 perm/sec)   p_kst 1.347541e-04   p_cons 6.903590e-01   p_joint 4.668852e-04

Joint ci ratio: 1.039286e-01	ci left: 4.405505e-04	ci right 4.891611e-04	k: 1421	n:3060000
Cons ci ratio: 1.500654e-03	ci left: 6.898764e-01	ci right 6.909128e-01	k: 2112608	n:3060000
KS ci ratio: 1.928775e-01	ci left: 1.219526e-04	ci right 1.482897e-04	k: 412	n:3060000
MAGEL2   3060000 perm   4303 sec   (711 perm/sec)   p_kst 1.346405e-04   p_cons 6.903948e-01   p_joint 4.643791e-04

Joint ci ratio: 1.044444e-01	ci left: 4.346739e-04	ci right 4.828888e-04	k: 1407	n:3070000
Cons ci ratio: 1.498230e-03	ci left: 6.898711e-01	ci right 6.909058e-01	k: 2119493	n:3070000
KS ci ratio: 1.921808e-01	ci left: 1.224854e-04	ci right 1.488310e-04	k: 415	n:3070000
MAGEL2   3070000 perm   4329 sec   (709 perm/sec)   p_kst 1.351792e-04   p_cons 6.903886e-01   p_joint 4.583062e-04

Joint ci ratio: 1.044074e-01	ci left: 4.335788e-04	ci right 4.816542e-04	k: 1408	n:3080000
Cons ci ratio: 1.495751e-03	ci left: 6.898846e-01	ci right 6.909176e-01	k: 2126436	n:3080000
KS ci ratio: 1.921808e-01	ci left: 1.220877e-04	ci right 1.483477e-04	k: 415	n:3080000
MAGEL2   3080000 perm   4354 sec   (707 perm/sec)   p_kst 1.347403e-04   p_cons 6.904013e-01   p_joint 4.571429e-04

Joint ci ratio: 1.043704e-01	ci left: 4.324908e-04	ci right 4.804275e-04	k: 1409	n:3090000
Cons ci ratio: 1.493341e-03	ci left: 6.898819e-01	ci right 6.909132e-01	k: 2133329	n:3090000
KS ci ratio: 1.921808e-01	ci left: 1.216926e-04	ci right 1.478677e-04	k: 415	n:3090000
MAGEL2   3090000 perm   4380 sec   (705 perm/sec)   p_kst 1.343042e-04   p_cons 6.903977e-01   p_joint 4.559871e-04

Joint ci ratio: 1.042227e-01	ci left: 4.323524e-04	ci right 4.802017e-04	k: 1413	n:3100000
Cons ci ratio: 1.491001e-03	ci left: 6.898627e-01	ci right 6.908924e-01	k: 2140171	n:3100000
KS ci ratio: 1.917205e-01	ci left: 1.219142e-04	ci right 1.480668e-04	k: 417	n:3100000
MAGEL2   3100000 perm   4406 sec   (704 perm/sec)   p_kst 1.345161e-04   p_cons 6.903777e-01   p_joint 4.558065e-04

Joint ci ratio: 1.041123e-01	ci left: 4.319017e-04	ci right 4.796474e-04	k: 1416	n:3110000
Cons ci ratio: 1.488623e-03	ci left: 6.898575e-01	ci right 6.908855e-01	k: 2147056	n:3110000
KS ci ratio: 1.914916e-01	ci left: 1.218283e-04	ci right 1.479276e-04	k: 418	n:3110000
MAGEL2   3110000 perm   4433 sec   (702 perm/sec)   p_kst 1.344051e-04   p_cons 6.903717e-01   p_joint 4.553055e-04

Joint ci ratio: 1.040390e-01	ci left: 4.311417e-04	ci right 4.787678e-04	k: 1418	n:3120000
Cons ci ratio: 1.486198e-03	ci left: 6.898690e-01	ci right 6.908954e-01	k: 2153993	n:3120000
KS ci ratio: 1.912635e-01	ci left: 1.217430e-04	ci right 1.477894e-04	k: 419	n:3120000
MAGEL2   3120000 perm   4459 sec   (700 perm/sec)   p_kst 1.342949e-04   p_cons 6.903824e-01   p_joint 4.544872e-04

Joint ci ratio: 1.038926e-01	ci left: 4.310090e-04	ci right 4.785494e-04	k: 1422	n:3130000
Cons ci ratio: 1.483726e-03	ci left: 6.898974e-01	ci right 6.909221e-01	k: 2160983	n:3130000
KS ci ratio: 1.908097e-01	ci left: 1.219625e-04	ci right 1.479867e-04	k: 421	n:3130000
MAGEL2   3130000 perm   4486 sec   (698 perm/sec)   p_kst 1.345048e-04   p_cons 6.904099e-01   p_joint 4.543131e-04

Joint ci ratio: 1.036018e-01	ci left: 4.321180e-04	ci right 4.796391e-04	k: 1430	n:3140000
Cons ci ratio: 1.481347e-03	ci left: 6.899026e-01	ci right 6.909257e-01	k: 2167901	n:3140000
KS ci ratio: 1.903591e-01	ci left: 1.221806e-04	ci right 1.481827e-04	k: 423	n:3140000
MAGEL2   3140000 perm   4513 sec   (696 perm/sec)   p_kst 1.347134e-04   p_cons 6.904143e-01   p_joint 4.554140e-04

Joint ci ratio: 1.033852e-01	ci left: 4.326017e-04	ci right 4.800705e-04	k: 1436	n:3150000
Cons ci ratio: 1.478981e-03	ci left: 6.899069e-01	ci right 6.909283e-01	k: 2174816	n:3150000
KS ci ratio: 1.901351e-01	ci left: 1.220951e-04	ci right 1.480448e-04	k: 424	n:3150000
MAGEL2   3150000 perm   4540 sec   (694 perm/sec)   p_kst 1.346032e-04   p_cons 6.904178e-01   p_joint 4.558730e-04

Joint ci ratio: 1.032058e-01	ci left: 4.327741e-04	ci right 4.801745e-04	k: 1441	n:3160000
Cons ci ratio: 1.476654e-03	ci left: 6.899035e-01	ci right 6.909233e-01	k: 2181707	n:3160000
KS ci ratio: 1.894675e-01	ci left: 1.226130e-04	ci right 1.485708e-04	k: 427	n:3160000
MAGEL2   3160000 perm   4567 sec   (692 perm/sec)   p_kst 1.351266e-04   p_cons 6.904136e-01   p_joint 4.560127e-04

Joint ci ratio: 1.030630e-01	ci left: 4.326381e-04	ci right 4.799541e-04	k: 1445	n:3170000
Cons ci ratio: 1.474323e-03	ci left: 6.899043e-01	ci right 6.909225e-01	k: 2188611	n:3170000
KS ci ratio: 1.892465e-01	ci left: 1.225267e-04	ci right 1.484325e-04	k: 428	n:3170000
MAGEL2   3170000 perm   4595 sec   (690 perm/sec)   p_kst 1.350158e-04   p_cons 6.904136e-01   p_joint 4.558360e-04

Joint ci ratio: 1.029208e-01	ci left: 4.325031e-04	ci right 4.797350e-04	k: 1449	n:3180000
Cons ci ratio: 1.472015e-03	ci left: 6.899016e-01	ci right 6.909182e-01	k: 2195504	n:3180000
KS ci ratio: 1.892466e-01	ci left: 1.221414e-04	ci right 1.479657e-04	k: 428	n:3180000
MAGEL2   3180000 perm   4622 sec   (688 perm/sec)   p_kst 1.345912e-04   p_cons 6.904101e-01   p_joint 4.556604e-04

Joint ci ratio: 1.040395e-01	ci left: 4.216808e-04	ci right 4.682620e-04	k: 1418	n:3190000
Cons ci ratio: 1.469679e-03	ci left: 6.899102e-01	ci right 6.909252e-01	k: 2202433	n:3190000
KS ci ratio: 1.892466e-01	ci left: 1.217585e-04	ci right 1.475019e-04	k: 428	n:3190000
MAGEL2   3190000 perm   4649 sec   (686 perm/sec)   p_kst 1.341693e-04   p_cons 6.904179e-01   p_joint 4.445141e-04

Joint ci ratio: 1.038932e-01	ci left: 4.215805e-04	ci right 4.680812e-04	k: 1422	n:3200000
Cons ci ratio: 1.467304e-03	ci left: 6.899335e-01	ci right 6.909468e-01	k: 2209409	n:3200000
KS ci ratio: 1.890265e-01	ci left: 1.216757e-04	ci right 1.473682e-04	k: 429	n:3200000
MAGEL2   3200000 perm   4677 sec   (684 perm/sec)   p_kst 1.340625e-04   p_cons 6.904403e-01   p_joint 4.443750e-04

Joint ci ratio: 1.037838e-01	ci left: 4.211775e-04	ci right 4.675819e-04	k: 1425	n:3210000
Cons ci ratio: 1.465035e-03	ci left: 6.899288e-01	ci right 6.909406e-01	k: 2216296	n:3210000
KS ci ratio: 1.890265e-01	ci left: 1.212966e-04	ci right 1.469091e-04	k: 429	n:3210000
MAGEL2   3210000 perm   4704 sec   (682 perm/sec)   p_kst 1.336449e-04   p_cons 6.904349e-01   p_joint 4.439252e-04

Joint ci ratio: 1.036749e-01	ci left: 4.207770e-04	ci right 4.670856e-04	k: 1428	n:3220000
Cons ci ratio: 1.462781e-03	ci left: 6.899230e-01	ci right 6.909332e-01	k: 2223179	n:3220000
KS ci ratio: 1.888071e-01	ci left: 1.212158e-04	ci right 1.467781e-04	k: 430	n:3220000
MAGEL2   3220000 perm   4732 sec   (680 perm/sec)   p_kst 1.335404e-04   p_cons 6.904283e-01   p_joint 4.434783e-04

Joint ci ratio: 1.034218e-01	ci left: 4.215854e-04	ci right 4.678628e-04	k: 1435	n:3230000
Cons ci ratio: 1.460560e-03	ci left: 6.899107e-01	ci right 6.909193e-01	k: 2230041	n:3230000
KS ci ratio: 1.881534e-01	ci left: 1.217255e-04	ci right 1.472962e-04	k: 433	n:3230000
MAGEL2   3230000 perm   4760 sec   (679 perm/sec)   p_kst 1.340557e-04   p_cons 6.904152e-01   p_joint 4.442724e-04

Joint ci ratio: 1.033499e-01	ci left: 4.208855e-04	ci right 4.670520e-04	k: 1437	n:3240000
Cons ci ratio: 1.458351e-03	ci left: 6.898978e-01	ci right 6.909049e-01	k: 2236901	n:3240000
KS ci ratio: 1.881534e-01	ci left: 1.213498e-04	ci right 1.468416e-04	k: 433	n:3240000
MAGEL2   3240000 perm   4787 sec   (677 perm/sec)   p_kst 1.336420e-04   p_cons 6.904015e-01   p_joint 4.435185e-04

Joint ci ratio: 1.031707e-01	ci left: 4.210892e-04	ci right 4.671931e-04	k: 1442	n:3250000
Cons ci ratio: 1.456068e-03	ci left: 6.899097e-01	ci right 6.909152e-01	k: 2243841	n:3250000
KS ci ratio: 1.881534e-01	ci left: 1.209764e-04	ci right 1.463898e-04	k: 433	n:3250000
MAGEL2   3250000 perm   4815 sec   (675 perm/sec)   p_kst 1.332308e-04   p_cons 6.904126e-01   p_joint 4.436923e-04

Joint ci ratio: 1.029924e-01	ci left: 4.212917e-04	ci right 4.673333e-04	k: 1447	n:3260000
Cons ci ratio: 1.453748e-03	ci left: 6.899352e-01	ci right 6.909393e-01	k: 2250826	n:3260000
KS ci ratio: 1.877214e-01	ci left: 1.211900e-04	ci right 1.465831e-04	k: 435	n:3260000
MAGEL2   3260000 perm   4843 sec   (673 perm/sec)   p_kst 1.334356e-04   p_cons 6.904374e-01   p_joint 4.438650e-04

Joint ci ratio: 1.027797e-01	ci left: 4.217910e-04	ci right 4.677862e-04	k: 1453	n:3270000
Cons ci ratio: 1.451451e-03	ci left: 6.899576e-01	ci right 6.909601e-01	k: 2257801	n:3270000
KS ci ratio: 1.875065e-01	ci left: 1.211108e-04	ci right 1.464550e-04	k: 436	n:3270000
MAGEL2   3270000 perm   4871 sec   (671 perm/sec)   p_kst 1.333333e-04   p_cons 6.904590e-01   p_joint 4.443425e-04

Joint ci ratio: 1.025682e-01	ci left: 4.222874e-04	ci right 4.682362e-04	k: 1459	n:3280000
Cons ci ratio: 1.449210e-03	ci left: 6.899661e-01	ci right 6.909671e-01	k: 2264731	n:3280000
KS ci ratio: 1.870788e-01	ci left: 1.213227e-04	ci right 1.466468e-04	k: 438	n:3280000
MAGEL2   3280000 perm   4899 sec   (670 perm/sec)   p_kst 1.335366e-04   p_cons 6.904668e-01   p_joint 4.448171e-04

Joint ci ratio: 1.023930e-01	ci left: 4.224846e-04	ci right 4.683717e-04	k: 1464	n:3290000
Cons ci ratio: 1.446952e-03	ci left: 6.899828e-01	ci right 6.909822e-01	k: 2271688	n:3290000
KS ci ratio: 1.866541e-01	ci left: 1.215334e-04	ci right 1.468374e-04	k: 440	n:3290000
MAGEL2   3290000 perm   4927 sec   (668 perm/sec)   p_kst 1.337386e-04   p_cons 6.904827e-01   p_joint 4.449848e-04

Joint ci ratio: 1.022884e-01	ci left: 4.220902e-04	ci right 4.678847e-04	k: 1467	n:3300000
Cons ci ratio: 1.444806e-03	ci left: 6.899694e-01	ci right 6.909673e-01	k: 2278546	n:3300000
KS ci ratio: 1.866542e-01	ci left: 1.211652e-04	ci right 1.463924e-04	k: 440	n:3300000
MAGEL2   3300000 perm   4955 sec   (666 perm/sec)   p_kst 1.333333e-04   p_cons 6.904685e-01   p_joint 4.445455e-04

Joint ci ratio: 1.022536e-01	ci left: 4.211094e-04	ci right 4.667810e-04	k: 1468	n:3310000
Cons ci ratio: 1.442669e-03	ci left: 6.899560e-01	ci right 6.909524e-01	k: 2285404	n:3310000
KS ci ratio: 1.866542e-01	ci left: 1.207991e-04	ci right 1.459501e-04	k: 440	n:3310000
MAGEL2   3310000 perm   4983 sec   (664 perm/sec)   p_kst 1.329305e-04   p_cons 6.904544e-01   p_joint 4.435045e-04

Joint ci ratio: 1.021147e-01	ci left: 4.210150e-04	ci right 4.666107e-04	k: 1472	n:3320000
Cons ci ratio: 1.440424e-03	ci left: 6.899780e-01	ci right 6.909729e-01	k: 2292379	n:3320000
KS ci ratio: 1.866542e-01	ci left: 1.204352e-04	ci right 1.455105e-04	k: 440	n:3320000
MAGEL2   3320000 perm   5011 sec   (663 perm/sec)   p_kst 1.325301e-04   p_cons 6.904756e-01   p_joint 4.433735e-04

Joint ci ratio: 1.019418e-01	ci left: 4.212139e-04	ci right 4.667492e-04	k: 1477	n:3330000
Cons ci ratio: 1.438301e-03	ci left: 6.899662e-01	ci right 6.909596e-01	k: 2299242	n:3330000
KS ci ratio: 1.858134e-01	ci left: 1.212188e-04	ci right 1.463307e-04	k: 444	n:3330000
MAGEL2   3330000 perm   5039 sec   (661 perm/sec)   p_kst 1.333333e-04   p_cons 6.904631e-01   p_joint 4.435435e-04

Joint ci ratio: 1.017355e-01	ci left: 4.217034e-04	ci right 4.671939e-04	k: 1483	n:3340000
Cons ci ratio: 1.436211e-03	ci left: 6.899479e-01	ci right 6.909398e-01	k: 2306083	n:3340000
KS ci ratio: 1.856050e-01	ci left: 1.211413e-04	ci right 1.462059e-04	k: 445	n:3340000
MAGEL2   3340000 perm   5067 sec   (659 perm/sec)   p_kst 1.332335e-04   p_cons 6.904440e-01   p_joint 4.440120e-04

Joint ci ratio: 1.016329e-01	ci left: 4.213173e-04	ci right 4.667176e-04	k: 1486	n:3350000
Cons ci ratio: 1.434031e-03	ci left: 6.899590e-01	ci right 6.909494e-01	k: 2313022	n:3350000
KS ci ratio: 1.851902e-01	ci left: 1.213490e-04	ci right 1.463941e-04	k: 447	n:3350000
MAGEL2   3350000 perm   5095 sec   (657 perm/sec)   p_kst 1.334328e-04   p_cons 6.904543e-01   p_joint 4.435821e-04

Joint ci ratio: 1.012927e-01	ci left: 4.229641e-04	ci right 4.683802e-04	k: 1496	n:3360000
Cons ci ratio: 1.431848e-03	ci left: 6.899738e-01	ci right 6.909628e-01	k: 2319974	n:3360000
KS ci ratio: 1.845732e-01	ci left: 1.218394e-04	ci right 1.468926e-04	k: 450	n:3360000
MAGEL2   3360000 perm   5124 sec   (656 perm/sec)   p_kst 1.339286e-04   p_cons 6.904685e-01   p_joint 4.452381e-04

Joint ci ratio: 1.013945e-01	ci left: 4.208413e-04	ci right 4.660776e-04	k: 1493	n:3370000
Cons ci ratio: 1.429654e-03	ci left: 6.899948e-01	ci right 6.909823e-01	k: 2326947	n:3370000
KS ci ratio: 1.837600e-01	ci left: 1.226101e-04	ci right 1.476983e-04	k: 454	n:3370000
MAGEL2   3370000 perm   5152 sec   (654 perm/sec)   p_kst 1.347181e-04   p_cons 6.904887e-01   p_joint 4.430267e-04

Joint ci ratio: 1.011578e-01	ci left: 4.216148e-04	ci right 4.668222e-04	k: 1500	n:3380000
Cons ci ratio: 1.427517e-03	ci left: 6.900018e-01	ci right 6.909878e-01	k: 2333873	n:3380000
KS ci ratio: 1.837600e-01	ci left: 1.222473e-04	ci right 1.472613e-04	k: 454	n:3380000
MAGEL2   3380000 perm   5180 sec   (652 perm/sec)   p_kst 1.343195e-04   p_cons 6.904950e-01   p_joint 4.437870e-04

Joint ci ratio: 1.010232e-01	ci left: 4.215212e-04	ci right 4.666549e-04	k: 1504	n:3390000
Cons ci ratio: 1.425400e-03	ci left: 6.900055e-01	ci right 6.909900e-01	k: 2340788	n:3390000
KS ci ratio: 1.835584e-01	ci left: 1.221682e-04	ci right 1.471354e-04	k: 455	n:3390000
MAGEL2   3390000 perm   5209 sec   (651 perm/sec)   p_kst 1.342183e-04   p_cons 6.904979e-01   p_joint 4.436578e-04

Joint ci ratio: 1.009227e-01	ci left: 4.211415e-04	ci right 4.661870e-04	k: 1507	n:3400000
Cons ci ratio: 1.423299e-03	ci left: 6.900071e-01	ci right 6.909902e-01	k: 2347696	n:3400000
KS ci ratio: 1.833575e-01	ci left: 1.220894e-04	ci right 1.470103e-04	k: 456	n:3400000
MAGEL2   3400000 perm   5238 sec   (649 perm/sec)   p_kst 1.341176e-04   p_cons 6.904988e-01   p_joint 4.432353e-04

Joint ci ratio: 1.017703e-01	ci left: 4.127608e-04	ci right 4.573028e-04	k: 1482	n:3410000
Cons ci ratio: 1.421238e-03	ci left: 6.899996e-01	ci right 6.909813e-01	k: 2354573	n:3410000
KS ci ratio: 1.833576e-01	ci left: 1.217314e-04	ci right 1.465792e-04	k: 456	n:3410000
MAGEL2   3410000 perm   5267 sec   (647 perm/sec)   p_kst 1.337243e-04   p_cons 6.904906e-01   p_joint 4.346041e-04

Joint ci ratio: 1.016333e-01	ci left: 4.126938e-04	ci right 4.571650e-04	k: 1486	n:3420000
Cons ci ratio: 1.419191e-03	ci left: 6.899907e-01	ci right 6.909709e-01	k: 2361445	n:3420000
KS ci ratio: 1.829576e-01	ci left: 1.219335e-04	ci right 1.467622e-04	k: 458	n:3420000
MAGEL2   3420000 perm   5295 sec   (646 perm/sec)   p_kst 1.339181e-04   p_cons 6.904810e-01   p_joint 4.345029e-04

Joint ci ratio: 1.014289e-01	ci left: 4.131955e-04	ci right 4.576258e-04	k: 1492	n:3430000
Cons ci ratio: 1.417113e-03	ci left: 6.899935e-01	ci right 6.909723e-01	k: 2368357	n:3430000
KS ci ratio: 1.827587e-01	ci left: 1.218562e-04	ci right 1.466392e-04	k: 459	n:3430000
MAGEL2   3430000 perm   5323 sec   (644 perm/sec)   p_kst 1.338192e-04   p_cons 6.904831e-01   p_joint 4.349854e-04

Joint ci ratio: 1.031005e-01	ci left: 3.983975e-04	ci right 4.419855e-04	k: 1444	n:3440000
Cons ci ratio: 1.415039e-03	ci left: 6.899981e-01	ci right 6.909754e-01	k: 2375275	n:3440000
KS ci ratio: 1.890273e-01	ci left: 1.131867e-04	ci right 1.370868e-04	k: 429	n:3440000
MAGEL2   3440000 perm   5353 sec   (643 perm/sec)   p_kst 1.247093e-04   p_cons 6.904869e-01   p_joint 4.197674e-04

Joint ci ratio: 1.030293e-01	ci left: 3.978075e-04	ci right 4.412990e-04	k: 1446	n:3450000
Cons ci ratio: 1.413002e-03	ci left: 6.899942e-01	ci right 6.909701e-01	k: 2382164	n:3450000
KS ci ratio: 1.888079e-01	ci left: 1.131347e-04	ci right 1.369930e-04	k: 430	n:3450000
MAGEL2   3450000 perm   5382 sec   (641 perm/sec)   p_kst 1.246377e-04   p_cons 6.904823e-01   p_joint 4.191304e-04

Joint ci ratio: 9.349531e-02	ci left: 4.840575e-04	ci right 5.318138e-04	k: 1756	n:3460000
Cons ci ratio: 1.410973e-03	ci left: 6.899906e-01	ci right 6.909651e-01	k: 2389054	n:3460000
KS ci ratio: 1.879378e-01	ci left: 1.139093e-04	ci right 1.378075e-04	k: 434	n:3460000
MAGEL2   3460000 perm   5411 sec   (639 perm/sec)   p_kst 1.254335e-04   p_cons 6.904780e-01   p_joint 5.075145e-04

Joint ci ratio: 9.330959e-02	ci left: 4.846327e-04	ci right 5.323456e-04	k: 1763	n:3470000
Cons ci ratio: 1.408982e-03	ci left: 6.899781e-01	ci right 6.909512e-01	k: 2395913	n:3470000
KS ci ratio: 1.877221e-01	ci left: 1.138557e-04	ci right 1.377121e-04	k: 435	n:3470000
MAGEL2   3470000 perm   5440 sec   (638 perm/sec)   p_kst 1.253602e-04   p_cons 6.904648e-01   p_joint 5.080692e-04

Joint ci ratio: 9.323038e-02	ci left: 4.840820e-04	ci right 5.316980e-04	k: 1766	n:3480000
Cons ci ratio: 1.406934e-03	ci left: 6.899855e-01	ci right 6.909573e-01	k: 2402841	n:3480000
KS ci ratio: 1.872930e-01	ci left: 1.140762e-04	ci right 1.379181e-04	k: 437	n:3480000
MAGEL2   3480000 perm   5469 sec   (636 perm/sec)   p_kst 1.255747e-04   p_cons 6.904716e-01   p_joint 5.074713e-04

Joint ci ratio: 9.315136e-02	ci left: 4.835346e-04	ci right 5.310541e-04	k: 1769	n:3490000
Cons ci ratio: 1.404893e-03	ci left: 6.899935e-01	ci right 6.909638e-01	k: 2409771	n:3490000
KS ci ratio: 1.872931e-01	ci left: 1.137494e-04	ci right 1.375229e-04	k: 437	n:3490000
MAGEL2   3490000 perm   5499 sec   (635 perm/sec)   p_kst 1.252149e-04   p_cons 6.904788e-01   p_joint 5.068768e-04

Joint ci ratio: 9.296768e-02	ci left: 4.841065e-04	ci right 5.315834e-04	k: 1776	n:3500000
Cons ci ratio: 1.402889e-03	ci left: 6.899928e-01	ci right 6.909617e-01	k: 2416671	n:3500000
KS ci ratio: 1.870796e-01	ci left: 1.136967e-04	ci right 1.374290e-04	k: 438	n:3500000
MAGEL2   3500000 perm   5528 sec   (633 perm/sec)   p_kst 1.251429e-04   p_cons 6.904774e-01   p_joint 5.074286e-04

Joint ci ratio: 9.283717e-02	ci left: 4.841187e-04	ci right 5.315265e-04	k: 1781	n:3510000
Cons ci ratio: 1.400832e-03	ci left: 6.900109e-01	ci right 6.909785e-01	k: 2423637	n:3510000
KS ci ratio: 1.868669e-01	ci left: 1.136443e-04	ci right 1.373357e-04	k: 439	n:3510000
MAGEL2   3510000 perm   5558 sec   (632 perm/sec)   p_kst 1.250712e-04   p_cons 6.904949e-01   p_joint 5.074074e-04

Joint ci ratio: 9.278516e-02	ci left: 4.832983e-04	ci right 5.305978e-04	k: 1783	n:3520000
Cons ci ratio: 1.398886e-03	ci left: 6.899980e-01	ci right 6.909642e-01	k: 2430494	n:3520000
KS ci ratio: 1.868670e-01	ci left: 1.133215e-04	ci right 1.369456e-04	k: 439	n:3520000
MAGEL2   3520000 perm   5587 sec   (630 perm/sec)   p_kst 1.247159e-04   p_cons 6.904813e-01   p_joint 5.065341e-04

Joint ci ratio: 9.270727e-02	ci left: 4.827593e-04	ci right 5.299643e-04	k: 1786	n:3530000
Cons ci ratio: 1.396870e-03	ci left: 6.900087e-01	ci right 6.909735e-01	k: 2437434	n:3530000
KS ci ratio: 1.868670e-01	ci left: 1.130005e-04	ci right 1.365576e-04	k: 439	n:3530000
MAGEL2   3530000 perm   5617 sec   (628 perm/sec)   p_kst 1.243626e-04   p_cons 6.904912e-01   p_joint 5.059490e-04

Joint ci ratio: 9.362923e-02	ci left: 4.717388e-04	ci right 5.183501e-04	k: 1751	n:3540000
Cons ci ratio: 1.394856e-03	ci left: 6.900215e-01	ci right 6.909849e-01	k: 2444382	n:3540000
KS ci ratio: 1.864437e-01	ci left: 1.132198e-04	ci right 1.367632e-04	k: 441	n:3540000
MAGEL2   3540000 perm   5647 sec   (627 perm/sec)   p_kst 1.245763e-04   p_cons 6.905034e-01   p_joint 4.946328e-04

Joint ci ratio: 9.349591e-02	ci left: 4.717855e-04	ci right 5.183313e-04	k: 1756	n:3550000
Cons ci ratio: 1.392892e-03	ci left: 6.900216e-01	ci right 6.909837e-01	k: 2451285	n:3550000
KS ci ratio: 1.858141e-01	ci left: 1.137066e-04	ci right 1.372624e-04	k: 444	n:3550000
MAGEL2   3550000 perm   5677 sec   (625 perm/sec)   p_kst 1.250704e-04   p_cons 6.905028e-01   p_joint 4.946479e-04

Joint ci ratio: 9.336316e-02	ci left: 4.718319e-04	ci right 5.183126e-04	k: 1761	n:3560000
Cons ci ratio: 1.390908e-03	ci left: 6.900305e-01	ci right 6.909912e-01	k: 2458219	n:3560000
KS ci ratio: 1.853980e-01	ci left: 1.139229e-04	ci right 1.374647e-04	k: 446	n:3560000
MAGEL2   3560000 perm   5707 sec   (624 perm/sec)   p_kst 1.252809e-04   p_cons 6.905110e-01   p_joint 4.946629e-04

Joint ci ratio: 9.387096e-02	ci left: 4.653127e-04	ci right 5.114142e-04	k: 1742	n:3570000
Cons ci ratio: 1.389003e-03	ci left: 6.900174e-01	ci right 6.909767e-01	k: 2465075	n:3570000
KS ci ratio: 1.851909e-01	ci left: 1.138709e-04	ci right 1.373727e-04	k: 447	n:3570000
MAGEL2   3570000 perm   5737 sec   (622 perm/sec)   p_kst 1.252101e-04   p_cons 6.904972e-01   p_joint 4.879552e-04

Joint ci ratio: 9.376345e-02	ci left: 4.651040e-04	ci right 5.111292e-04	k: 1746	n:3580000
Cons ci ratio: 1.387061e-03	ci left: 6.900183e-01	ci right 6.909763e-01	k: 2471981	n:3580000
KS ci ratio: 1.849846e-01	ci left: 1.138192e-04	ci right 1.372812e-04	k: 448	n:3580000
MAGEL2   3580000 perm   5768 sec   (621 perm/sec)   p_kst 1.251397e-04   p_cons 6.904975e-01   p_joint 4.877095e-04

Joint ci ratio: 9.365630e-02	ci left: 4.648966e-04	ci right 5.108457e-04	k: 1750	n:3590000
Cons ci ratio: 1.385105e-03	ci left: 6.900260e-01	ci right 6.909826e-01	k: 2478911	n:3590000
KS ci ratio: 1.847790e-01	ci left: 1.137678e-04	ci right 1.371903e-04	k: 449	n:3590000
MAGEL2   3590000 perm   5799 sec   (619 perm/sec)   p_kst 1.250696e-04   p_cons 6.905045e-01   p_joint 4.874652e-04

Joint ci ratio: 9.354952e-02	ci left: 4.646903e-04	ci right 5.105638e-04	k: 1754	n:3600000
Cons ci ratio: 1.383105e-03	ci left: 6.900497e-01	ci right 6.910050e-01	k: 2485899	n:3600000
KS ci ratio: 1.845740e-01	ci left: 1.137167e-04	ci right 1.370998e-04	k: 450	n:3600000
MAGEL2   3600000 perm   5830 sec   (618 perm/sec)   p_kst 1.250000e-04   p_cons 6.905275e-01   p_joint 4.872222e-04

Joint ci ratio: 9.341654e-02	ci left: 4.647557e-04	ci right 5.105669e-04	k: 1759	n:3610000
Cons ci ratio: 1.381208e-03	ci left: 6.900442e-01	ci right 6.909982e-01	k: 2492782	n:3610000
KS ci ratio: 1.841661e-01	ci left: 1.139302e-04	ci right 1.372996e-04	k: 452	n:3610000
MAGEL2   3610000 perm   5860 sec   (616 perm/sec)   p_kst 1.252078e-04   p_cons 6.905213e-01   p_joint 4.872576e-04

Joint ci ratio: 9.339006e-02	ci left: 4.637416e-04	ci right 5.094392e-04	k: 1760	n:3620000
Cons ci ratio: 1.379280e-03	ci left: 6.900509e-01	ci right 6.910035e-01	k: 2499709	n:3620000
KS ci ratio: 1.839632e-01	ci left: 1.138790e-04	ci right 1.372092e-04	k: 453	n:3620000
MAGEL2   3620000 perm   5891 sec   (614 perm/sec)   p_kst 1.251381e-04   p_cons 6.905273e-01   p_joint 4.861878e-04

Joint ci ratio: 9.325776e-02	ci left: 4.638094e-04	ci right 5.094454e-04	k: 1765	n:3630000
Cons ci ratio: 1.377249e-03	ci left: 6.900917e-01	ci right 6.910430e-01	k: 2506760	n:3630000
KS ci ratio: 1.833583e-01	ci left: 1.143537e-04	ci right 1.376956e-04	k: 456	n:3630000
MAGEL2   3630000 perm   5921 sec   (613 perm/sec)   p_kst 1.256198e-04   p_cons 6.905675e-01   p_joint 4.862259e-04

Joint ci ratio: 9.533268e-02	ci left: 4.421481e-04	ci right 4.866748e-04	k: 1689	n:3640000
Cons ci ratio: 1.375391e-03	ci left: 6.900814e-01	ci right 6.910315e-01	k: 2513626	n:3640000
KS ci ratio: 1.833583e-01	ci left: 1.140395e-04	ci right 1.373174e-04	k: 456	n:3640000
MAGEL2   3640000 perm   5952 sec   (612 perm/sec)   p_kst 1.252747e-04   p_cons 6.905566e-01   p_joint 4.640110e-04

Joint ci ratio: 9.513583e-02	ci left: 4.428089e-04	ci right 4.873049e-04	k: 1696	n:3650000
Cons ci ratio: 1.373559e-03	ci left: 6.900655e-01	ci right 6.910142e-01	k: 2520471	n:3650000
KS ci ratio: 1.829584e-01	ci left: 1.142499e-04	ci right 1.375142e-04	k: 458	n:3650000
MAGEL2   3650000 perm   5983 sec   (610 perm/sec)   p_kst 1.254795e-04   p_cons 6.905400e-01   p_joint 4.646575e-04

Joint ci ratio: 9.499598e-02	ci left: 4.429327e-04	ci right 4.873720e-04	k: 1701	n:3660000
Cons ci ratio: 1.371726e-03	ci left: 6.900523e-01	ci right 6.909998e-01	k: 2527326	n:3660000
KS ci ratio: 1.825611e-01	ci left: 1.144592e-04	ci right 1.377099e-04	k: 460	n:3660000
MAGEL2   3660000 perm   6013 sec   (609 perm/sec)   p_kst 1.256831e-04   p_cons 6.905262e-01   p_joint 4.647541e-04

Joint ci ratio: 9.494025e-02	ci left: 4.422578e-04	ci right 4.866020e-04	k: 1703	n:3670000
Cons ci ratio: 1.369888e-03	ci left: 6.900428e-01	ci right 6.909890e-01	k: 2534194	n:3670000
KS ci ratio: 1.825611e-01	ci left: 1.141473e-04	ci right 1.373347e-04	k: 460	n:3670000
MAGEL2   3670000 perm   6044 sec   (607 perm/sec)   p_kst 1.253406e-04   p_cons 6.905161e-01   p_joint 4.640327e-04

Joint ci ratio: 9.474581e-02	ci left: 4.429131e-04	ci right 4.872269e-04	k: 1710	n:3680000
Cons ci ratio: 1.368046e-03	ci left: 6.900372e-01	ci right 6.909821e-01	k: 2541076	n:3680000
KS ci ratio: 1.819699e-01	ci left: 1.146152e-04	ci right 1.378138e-04	k: 463	n:3680000
MAGEL2   3680000 perm   6075 sec   (606 perm/sec)   p_kst 1.258152e-04   p_cons 6.905098e-01   p_joint 4.646739e-04

Joint ci ratio: 9.458011e-02	ci left: 4.433003e-04	ci right 4.875710e-04	k: 1716	n:3690000
Cons ci ratio: 1.366216e-03	ci left: 6.900299e-01	ci right 6.909736e-01	k: 2547952	n:3690000
KS ci ratio: 1.817742e-01	ci left: 1.145632e-04	ci right 1.377237e-04	k: 464	n:3690000
MAGEL2   3690000 perm   6106 sec   (604 perm/sec)   p_kst 1.257453e-04   p_cons 6.905019e-01   p_joint 4.650407e-04

Joint ci ratio: 9.441527e-02	ci left: 4.436855e-04	ci right 4.879132e-04	k: 1722	n:3700000
Cons ci ratio: 1.364406e-03	ci left: 6.900189e-01	ci right 6.909613e-01	k: 2554814	n:3700000
KS ci ratio: 1.813845e-01	ci left: 1.147696e-04	ci right 1.379165e-04	k: 466	n:3700000
MAGEL2   3700000 perm   6137 sec   (603 perm/sec)   p_kst 1.259459e-04   p_cons 6.904903e-01   p_joint 4.654054e-04

Joint ci ratio: 9.463538e-02	ci left: 4.403842e-04	ci right 4.843908e-04	k: 1714	n:3710000
Cons ci ratio: 1.362563e-03	ci left: 6.900204e-01	ci right 6.909615e-01	k: 2561722	n:3710000
KS ci ratio: 1.811906e-01	ci left: 1.147175e-04	ci right 1.378266e-04	k: 467	n:3710000
MAGEL2   3710000 perm   6168 sec   (601 perm/sec)   p_kst 1.258760e-04   p_cons 6.904911e-01   p_joint 4.619946e-04

Joint ci ratio: 9.452522e-02	ci left: 4.402502e-04	ci right 4.841894e-04	k: 1718	n:3720000
Cons ci ratio: 1.360687e-03	ci left: 6.900345e-01	ci right 6.909743e-01	k: 2568677	n:3720000
KS ci ratio: 1.808047e-01	ci left: 1.149224e-04	ci right 1.380180e-04	k: 469	n:3720000
MAGEL2   3720000 perm   6200 sec   (600 perm/sec)   p_kst 1.260753e-04   p_cons 6.905046e-01   p_joint 4.618280e-04

Joint ci ratio: 9.433332e-02	ci left: 4.409022e-04	ci right 4.848123e-04	k: 1725	n:3730000
Cons ci ratio: 1.358913e-03	ci left: 6.900190e-01	ci right 6.909576e-01	k: 2575522	n:3730000
KS ci ratio: 1.806126e-01	ci left: 1.148703e-04	ci right 1.379282e-04	k: 470	n:3730000
MAGEL2   3730000 perm   6231 sec   (599 perm/sec)   p_kst 1.260054e-04   p_cons 6.904885e-01   p_joint 4.624665e-04

Joint ci ratio: 9.425146e-02	ci left: 4.405066e-04	ci right 4.843370e-04	k: 1728	n:3740000
Cons ci ratio: 1.357133e-03	ci left: 6.900079e-01	ci right 6.909452e-01	k: 2582383	n:3740000
KS ci ratio: 1.804212e-01	ci left: 1.148185e-04	ci right 1.378389e-04	k: 471	n:3740000
MAGEL2   3740000 perm   6262 sec   (597 perm/sec)   p_kst 1.259358e-04   p_cons 6.904767e-01   p_joint 4.620321e-04

Joint ci ratio: 9.408833e-02	ci left: 4.408942e-04	ci right 4.846831e-04	k: 1734	n:3750000
Cons ci ratio: 1.355404e-03	ci left: 6.899827e-01	ci right 6.909188e-01	k: 2589191	n:3750000
KS ci ratio: 1.802304e-01	ci left: 1.147669e-04	ci right 1.377500e-04	k: 472	n:3750000
MAGEL2   3750000 perm   6293 sec   (596 perm/sec)   p_kst 1.258667e-04   p_cons 6.904509e-01   p_joint 4.624000e-04

Joint ci ratio: 1.093778e-01	ci left: 3.228082e-04	ci right 3.604150e-04	k: 1283	n:3760000
Cons ci ratio: 1.353637e-03	ci left: 6.899718e-01	ci right 6.909066e-01	k: 2596052	n:3760000
KS ci ratio: 1.798506e-01	ci left: 1.149696e-04	ci right 1.379395e-04	k: 474	n:3760000
MAGEL2   3760000 perm   6325 sec   (595 perm/sec)   p_kst 1.260638e-04   p_cons 6.904394e-01   p_joint 3.412234e-04

Joint ci ratio: 1.093353e-01	ci left: 3.222100e-04	ci right 3.597315e-04	k: 1284	n:3770000
Cons ci ratio: 1.351871e-03	ci left: 6.899628e-01	ci right 6.908964e-01	k: 2602920	n:3770000
KS ci ratio: 1.798506e-01	ci left: 1.146647e-04	ci right 1.375736e-04	k: 474	n:3770000
MAGEL2   3770000 perm   6356 sec   (593 perm/sec)   p_kst 1.257294e-04   p_cons 6.904297e-01   p_joint 3.405836e-04

Joint ci ratio: 1.091232e-01	ci left: 3.226442e-04	ci right 3.601387e-04	k: 1289	n:3780000
Cons ci ratio: 1.350064e-03	ci left: 6.899688e-01	ci right 6.909012e-01	k: 2609845	n:3780000
KS ci ratio: 1.792853e-01	ci left: 1.151193e-04	ci right 1.380389e-04	k: 477	n:3780000
MAGEL2   3780000 perm   6388 sec   (592 perm/sec)   p_kst 1.261905e-04   p_cons 6.904352e-01   p_joint 3.410053e-04

Joint ci ratio: 1.090809e-01	ci left: 3.220495e-04	ci right 3.594596e-04	k: 1290	n:3790000
Cons ci ratio: 1.348220e-03	ci left: 6.899892e-01	ci right 6.909203e-01	k: 2616824	n:3790000
KS ci ratio: 1.790980e-01	ci left: 1.150676e-04	ci right 1.379504e-04	k: 478	n:3790000
MAGEL2   3790000 perm   6420 sec   (590 perm/sec)   p_kst 1.261214e-04   p_cons 6.904549e-01   p_joint 3.403694e-04

Joint ci ratio: 1.089966e-01	ci left: 3.217140e-04	ci right 3.590543e-04	k: 1292	n:3800000
Cons ci ratio: 1.346387e-03	ci left: 6.900081e-01	ci right 6.909380e-01	k: 2623798	n:3800000
KS ci ratio: 1.789114e-01	ci left: 1.150161e-04	ci right 1.378623e-04	k: 479	n:3800000
MAGEL2   3800000 perm   6451 sec   (589 perm/sec)   p_kst 1.260526e-04   p_cons 6.904732e-01   p_joint 3.400000e-04

Joint ci ratio: 1.087027e-01	ci left: 3.226569e-04	ci right 3.599992e-04	k: 1299	n:3810000
Cons ci ratio: 1.344586e-03	ci left: 6.900193e-01	ci right 6.909479e-01	k: 2630743	n:3810000
KS ci ratio: 1.781705e-01	ci left: 1.157172e-04	ci right 1.385972e-04	k: 483	n:3810000
MAGEL2   3810000 perm   6483 sec   (588 perm/sec)   p_kst 1.267717e-04   p_cons 6.904837e-01   p_joint 3.409449e-04

Joint ci ratio: 1.084942e-01	ci left: 3.230856e-04	ci right 3.604012e-04	k: 1304	n:3820000
Cons ci ratio: 1.342821e-03	ci left: 6.900212e-01	ci right 6.909487e-01	k: 2637653	n:3820000
KS ci ratio: 1.778035e-01	ci left: 1.159145e-04	ci right 1.387812e-04	k: 485	n:3820000
MAGEL2   3820000 perm   6515 sec   (586 perm/sec)   p_kst 1.269634e-04   p_cons 6.904851e-01   p_joint 3.413613e-04

Joint ci ratio: 1.084112e-01	ci left: 3.227500e-04	ci right 3.599965e-04	k: 1306	n:3830000
Cons ci ratio: 1.341031e-03	ci left: 6.900331e-01	ci right 6.909593e-01	k: 2644601	n:3830000
KS ci ratio: 1.778035e-01	ci left: 1.156119e-04	ci right 1.384189e-04	k: 485	n:3830000
MAGEL2   3830000 perm   6547 sec   (585 perm/sec)   p_kst 1.266319e-04   p_cons 6.904963e-01   p_joint 3.409922e-04

Joint ci ratio: 1.083698e-01	ci left: 3.221629e-04	ci right 3.593265e-04	k: 1307	n:3840000
Cons ci ratio: 1.339285e-03	ci left: 6.900332e-01	ci right 6.909582e-01	k: 2651504	n:3840000
KS ci ratio: 1.778035e-01	ci left: 1.153108e-04	ci right 1.380584e-04	k: 485	n:3840000
MAGEL2   3840000 perm   6579 sec   (584 perm/sec)   p_kst 1.263021e-04   p_cons 6.904958e-01   p_joint 3.403646e-04

Joint ci ratio: 1.082044e-01	ci left: 3.223369e-04	ci right 3.594603e-04	k: 1311	n:3850000
Cons ci ratio: 1.337575e-03	ci left: 6.900242e-01	ci right 6.909480e-01	k: 2658372	n:3850000
KS ci ratio: 1.776209e-01	ci left: 1.152595e-04	ci right 1.379711e-04	k: 486	n:3850000
MAGEL2   3850000 perm   6612 sec   (582 perm/sec)   p_kst 1.262338e-04   p_cons 6.904862e-01   p_joint 3.405195e-04

Joint ci ratio: 1.080809e-01	ci left: 3.222580e-04	ci right 3.593273e-04	k: 1314	n:3860000
Cons ci ratio: 1.335822e-03	ci left: 6.900308e-01	ci right 6.909534e-01	k: 2665300	n:3860000
KS ci ratio: 1.774388e-01	ci left: 1.152084e-04	ci right 1.378842e-04	k: 487	n:3860000
MAGEL2   3860000 perm   6645 sec   (581 perm/sec)   p_kst 1.261658e-04   p_cons 6.904922e-01   p_joint 3.404145e-04

Joint ci ratio: 1.079579e-01	ci left: 3.221796e-04	ci right 3.591949e-04	k: 1317	n:3870000
Cons ci ratio: 1.334082e-03	ci left: 6.900358e-01	ci right 6.909572e-01	k: 2672222	n:3870000
KS ci ratio: 1.772573e-01	ci left: 1.151577e-04	ci right 1.377978e-04	k: 488	n:3870000
MAGEL2   3870000 perm   6677 sec   (580 perm/sec)   p_kst 1.260982e-04   p_cons 6.904966e-01   p_joint 3.403101e-04

Joint ci ratio: 1.075911e-01	ci left: 3.236063e-04	ci right 3.606512e-04	k: 1326	n:3880000
Cons ci ratio: 1.332353e-03	ci left: 6.900390e-01	ci right 6.909592e-01	k: 2679137	n:3880000
KS ci ratio: 1.768959e-01	ci left: 1.153535e-04	ci right 1.379809e-04	k: 490	n:3880000
MAGEL2   3880000 perm   6709 sec   (578 perm/sec)   p_kst 1.262887e-04   p_cons 6.904992e-01   p_joint 3.417526e-04

Joint ci ratio: 1.073486e-01	ci left: 3.242754e-04	ci right 3.613080e-04	k: 1332	n:3890000
Cons ci ratio: 1.330636e-03	ci left: 6.900406e-01	ci right 6.909596e-01	k: 2686046	n:3890000
KS ci ratio: 1.767160e-01	ci left: 1.153026e-04	ci right 1.378947e-04	k: 491	n:3890000
MAGEL2   3890000 perm   6741 sec   (577 perm/sec)   p_kst 1.262211e-04   p_cons 6.905003e-01   p_joint 3.424165e-04

Joint ci ratio: 1.071478e-01	ci left: 3.246915e-04	ci right 3.616979e-04	k: 1337	n:3900000
Cons ci ratio: 1.328940e-03	ci left: 6.900378e-01	ci right 6.909557e-01	k: 2692938	n:3900000
KS ci ratio: 1.763579e-01	ci left: 1.154972e-04	ci right 1.380765e-04	k: 493	n:3900000
MAGEL2   3900000 perm   6773 sec   (576 perm/sec)   p_kst 1.264103e-04   p_cons 6.904969e-01   p_joint 3.428205e-04

Joint ci ratio: 9.633744e-02	ci left: 4.028789e-04	ci right 4.439027e-04	k: 1654	n:3910000
Cons ci ratio: 1.327172e-03	ci left: 6.900602e-01	ci right 6.909769e-01	k: 2699928	n:3910000
KS ci ratio: 1.761797e-01	ci left: 1.154462e-04	ci right 1.379904e-04	k: 494	n:3910000
MAGEL2   3910000 perm   6806 sec   (575 perm/sec)   p_kst 1.263427e-04   p_cons 6.905187e-01   p_joint 4.230179e-04

Joint ci ratio: 9.648340e-02	ci left: 4.006064e-04	ci right 4.414640e-04	k: 1649	n:3920000
Cons ci ratio: 1.325510e-03	ci left: 6.900505e-01	ci right 6.909660e-01	k: 2706793	n:3920000
KS ci ratio: 1.761798e-01	ci left: 1.151517e-04	ci right 1.376384e-04	k: 494	n:3920000
MAGEL2   3920000 perm   6838 sec   (573 perm/sec)   p_kst 1.260204e-04   p_cons 6.905084e-01   p_joint 4.206633e-04

Joint ci ratio: 9.630844e-02	ci left: 4.010769e-04	ci right 4.419042e-04	k: 1655	n:3930000
Cons ci ratio: 1.323796e-03	ci left: 6.900595e-01	ci right 6.909738e-01	k: 2713731	n:3930000
KS ci ratio: 1.761798e-01	ci left: 1.148587e-04	ci right 1.372882e-04	k: 494	n:3930000
MAGEL2   3930000 perm   6871 sec   (572 perm/sec)   p_kst 1.256997e-04   p_cons 6.905168e-01   p_joint 4.211196e-04

Joint ci ratio: 9.625036e-02	ci left: 4.005543e-04	ci right 4.413025e-04	k: 1657	n:3940000
Cons ci ratio: 1.322166e-03	ci left: 6.900438e-01	ci right 6.909570e-01	k: 2720572	n:3940000
KS ci ratio: 1.761798e-01	ci left: 1.145672e-04	ci right 1.369398e-04	k: 494	n:3940000
MAGEL2   3940000 perm   6903 sec   (571 perm/sec)   p_kst 1.253807e-04   p_cons 6.905005e-01   p_joint 4.205584e-04

Joint ci ratio: 9.610555e-02	ci left: 4.007757e-04	ci right 4.414815e-04	k: 1662	n:3950000
Cons ci ratio: 1.320428e-03	ci left: 6.900649e-01	ci right 6.909769e-01	k: 2727558	n:3950000
KS ci ratio: 1.758249e-01	ci left: 1.147612e-04	ci right 1.371217e-04	k: 496	n:3950000
MAGEL2   3950000 perm   6936 sec   (570 perm/sec)   p_kst 1.255696e-04   p_cons 6.905210e-01   p_joint 4.207595e-04

Joint ci ratio: 9.604783e-02	ci left: 4.002565e-04	ci right 4.408838e-04	k: 1664	n:3960000
Cons ci ratio: 1.318730e-03	ci left: 6.900750e-01	ci right 6.909858e-01	k: 2734501	n:3960000
KS ci ratio: 1.758250e-01	ci left: 1.144714e-04	ci right 1.367754e-04	k: 496	n:3960000
MAGEL2   3960000 perm   6968 sec   (568 perm/sec)   p_kst 1.252525e-04   p_cons 6.905306e-01   p_joint 4.202020e-04

Joint ci ratio: 9.584653e-02	ci left: 4.009692e-04	ci right 4.415788e-04	k: 1671	n:3970000
Cons ci ratio: 1.317066e-03	ci left: 6.900762e-01	ci right 6.909860e-01	k: 2741409	n:3970000
KS ci ratio: 1.754722e-01	ci left: 1.146647e-04	ci right 1.369568e-04	k: 498	n:3970000
MAGEL2   3970000 perm   7001 sec   (567 perm/sec)   p_kst 1.254408e-04   p_cons 6.905312e-01   p_joint 4.209068e-04

Joint ci ratio: 9.584658e-02	ci left: 3.999618e-04	ci right 4.404693e-04	k: 1671	n:3980000
Cons ci ratio: 1.315443e-03	ci left: 6.900662e-01	ci right 6.909748e-01	k: 2748272	n:3980000
KS ci ratio: 1.754723e-01	ci left: 1.143766e-04	ci right 1.366127e-04	k: 498	n:3980000
MAGEL2   3980000 perm   7034 sec   (566 perm/sec)   p_kst 1.251256e-04   p_cons 6.905206e-01   p_joint 4.198492e-04

Joint ci ratio: 9.570358e-02	ci left: 4.001825e-04	ci right 4.406485e-04	k: 1676	n:3990000
Cons ci ratio: 1.313747e-03	ci left: 6.900820e-01	ci right 6.909894e-01	k: 2755238	n:3990000
KS ci ratio: 1.752967e-01	ci left: 1.143295e-04	ci right 1.365319e-04	k: 499	n:3990000
MAGEL2   3990000 perm   7068 sec   (565 perm/sec)   p_kst 1.250627e-04   p_cons 6.905358e-01   p_joint 4.200501e-04

Joint ci ratio: 9.561811e-02	ci left: 3.999141e-04	ci right 4.403149e-04	k: 1679	n:4000000
Cons ci ratio: 1.312104e-03	ci left: 6.900822e-01	ci right 6.909885e-01	k: 2762142	n:4000000
KS ci ratio: 1.751217e-01	ci left: 1.142827e-04	ci right 1.364515e-04	k: 500	n:4000000
MAGEL2   4000000 perm   7101 sec   (563 perm/sec)   p_kst 1.250000e-04   p_cons 6.905355e-01   p_joint 4.197500e-04

Joint ci ratio: 9.550448e-02	ci left: 3.998904e-04	ci right 4.402382e-04	k: 1683	n:4010000
Cons ci ratio: 1.310497e-03	ci left: 6.900732e-01	ci right 6.909784e-01	k: 2769009	n:4010000
KS ci ratio: 1.749472e-01	ci left: 1.142362e-04	ci right 1.363715e-04	k: 501	n:4010000
MAGEL2   4010000 perm   7135 sec   (562 perm/sec)   p_kst 1.249377e-04   p_cons 6.905259e-01   p_joint 4.197007e-04

Joint ci ratio: 9.536301e-02	ci left: 4.001098e-04	ci right 4.404165e-04	k: 1688	n:4020000
Cons ci ratio: 1.308826e-03	ci left: 6.900867e-01	ci right 6.909907e-01	k: 2775966	n:4020000
KS ci ratio: 1.747732e-01	ci left: 1.141899e-04	ci right 1.362919e-04	k: 502	n:4020000
MAGEL2   4020000 perm   7168 sec   (561 perm/sec)   p_kst 1.248756e-04   p_cons 6.905388e-01   p_joint 4.199005e-04

Joint ci ratio: 9.525029e-02	ci left: 4.000859e-04	ci right 4.403398e-04	k: 1692	n:4030000
Cons ci ratio: 1.307222e-03	ci left: 6.900804e-01	ci right 6.909833e-01	k: 2782844	n:4030000
KS ci ratio: 1.745997e-01	ci left: 1.141438e-04	ci right 1.362127e-04	k: 503	n:4030000
MAGEL2   4030000 perm   7202 sec   (560 perm/sec)   p_kst 1.248139e-04   p_cons 6.905320e-01   p_joint 4.198511e-04

Joint ci ratio: 9.513797e-02	ci left: 4.000621e-04	ci right 4.402636e-04	k: 1696	n:4040000
Cons ci ratio: 1.305601e-03	ci left: 6.900816e-01	ci right 6.909834e-01	k: 2789752	n:4040000
KS ci ratio: 1.745998e-01	ci left: 1.138613e-04	ci right 1.358756e-04	k: 503	n:4040000
MAGEL2   4040000 perm   7235 sec   (558 perm/sec)   p_kst 1.245050e-04   p_cons 6.905327e-01   p_joint 4.198020e-04

Joint ci ratio: 9.502604e-02	ci left: 4.000384e-04	ci right 4.401876e-04	k: 1700	n:4050000
Cons ci ratio: 1.304017e-03	ci left: 6.900727e-01	ci right 6.909734e-01	k: 2796619	n:4050000
KS ci ratio: 1.744268e-01	ci left: 1.138163e-04	ci right 1.357978e-04	k: 504	n:4050000
MAGEL2   4050000 perm   7269 sec   (557 perm/sec)   p_kst 1.244444e-04   p_cons 6.905232e-01   p_joint 4.197531e-04

Joint ci ratio: 9.494237e-02	ci left: 3.997745e-04	ci right 4.398599e-04	k: 1703	n:4060000
Cons ci ratio: 1.302425e-03	ci left: 6.900685e-01	ci right 6.909681e-01	k: 2803505	n:4060000
KS ci ratio: 1.740824e-01	ci left: 1.140071e-04	ci right 1.359774e-04	k: 506	n:4060000
MAGEL2   4060000 perm   7303 sec   (556 perm/sec)   p_kst 1.246305e-04   p_cons 6.905185e-01   p_joint 4.194581e-04

Joint ci ratio: 9.474792e-02	ci left: 4.004713e-04	ci right 4.405398e-04	k: 1710	n:4070000
Cons ci ratio: 1.300855e-03	ci left: 6.900587e-01	ci right 6.909572e-01	k: 2810368	n:4070000
KS ci ratio: 1.735696e-01	ci left: 1.144320e-04	ci right 1.364124e-04	k: 509	n:4070000
MAGEL2   4070000 perm   7337 sec   (555 perm/sec)   p_kst 1.250614e-04   p_cons 6.905081e-01   p_joint 4.201474e-04

Joint ci ratio: 9.463737e-02	ci left: 4.004470e-04	ci right 4.404637e-04	k: 1714	n:4080000
Cons ci ratio: 1.299213e-03	ci left: 6.900750e-01	ci right 6.909723e-01	k: 2817337	n:4080000
KS ci ratio: 1.733997e-01	ci left: 1.143860e-04	ci right 1.363338e-04	k: 510	n:4080000
MAGEL2   4080000 perm   7371 sec   (554 perm/sec)   p_kst 1.250000e-04   p_cons 6.905238e-01   p_joint 4.200980e-04

Joint ci ratio: 9.455472e-02	ci left: 4.001840e-04	ci right 4.401376e-04	k: 1717	n:4090000
Cons ci ratio: 1.297629e-03	ci left: 6.900737e-01	ci right 6.909700e-01	k: 2824235	n:4090000
KS ci ratio: 1.732303e-01	ci left: 1.143402e-04	ci right 1.362555e-04	k: 511	n:4090000
MAGEL2   4090000 perm   7404 sec   (552 perm/sec)   p_kst 1.249389e-04   p_cons 6.905220e-01   p_joint 4.198044e-04

Joint ci ratio: 9.447228e-02	ci left: 3.999224e-04	ci right 4.398131e-04	k: 1720	n:4100000
Cons ci ratio: 1.296012e-03	ci left: 6.900852e-01	ci right 6.909804e-01	k: 2831185	n:4100000
KS ci ratio: 1.727250e-01	ci left: 1.147614e-04	ci right 1.366866e-04	k: 514	n:4100000
MAGEL2   4100000 perm   7439 sec   (551 perm/sec)   p_kst 1.253659e-04   p_cons 6.905329e-01   p_joint 4.195122e-04

Joint ci ratio: 9.439006e-02	ci left: 3.996620e-04	ci right 4.394901e-04	k: 1723	n:4110000
Cons ci ratio: 1.294460e-03	ci left: 6.900774e-01	ci right 6.909715e-01	k: 2838056	n:4110000
KS ci ratio: 1.727250e-01	ci left: 1.144821e-04	ci right 1.363540e-04	k: 514	n:4110000
MAGEL2   4110000 perm   7474 sec   (550 perm/sec)   p_kst 1.250608e-04   p_cons 6.905246e-01   p_joint 4.192214e-04

Joint ci ratio: 9.417178e-02	ci left: 4.005879e-04	ci right 4.404109e-04	k: 1731	n:4120000
Cons ci ratio: 1.292813e-03	ci left: 6.901029e-01	ci right 6.909959e-01	k: 2845064	n:4120000
KS ci ratio: 1.722241e-01	ci left: 1.149010e-04	ci right 1.367826e-04	k: 517	n:4120000
MAGEL2   4120000 perm   7508 sec   (549 perm/sec)   p_kst 1.254854e-04   p_cons 6.905495e-01   p_joint 4.201456e-04

Joint ci ratio: 9.409034e-02	ci left: 4.003273e-04	ci right 4.400880e-04	k: 1734	n:4130000
Cons ci ratio: 1.291264e-03	ci left: 6.900975e-01	ci right 6.909894e-01	k: 2851945	n:4130000
KS ci ratio: 1.718925e-01	ci left: 1.150862e-04	ci right 1.369565e-04	k: 519	n:4130000
MAGEL2   4130000 perm   7543 sec   (548 perm/sec)   p_kst 1.256659e-04   p_cons 6.905436e-01   p_joint 4.198547e-04

Joint ci ratio: 9.403618e-02	ci left: 3.998320e-04	ci right 4.395195e-04	k: 1736	n:4140000
Cons ci ratio: 1.289673e-03	ci left: 6.901083e-01	ci right 6.909991e-01	k: 2858893	n:4140000
KS ci ratio: 1.717275e-01	ci left: 1.150394e-04	ci right 1.368776e-04	k: 520	n:4140000
MAGEL2   4140000 perm   7577 sec   (546 perm/sec)   p_kst 1.256039e-04   p_cons 6.905539e-01   p_joint 4.193237e-04

Joint ci ratio: 9.392809e-02	ci left: 3.998098e-04	ci right 4.394469e-04	k: 1740	n:4150000
Cons ci ratio: 1.288128e-03	ci left: 6.901056e-01	ci right 6.909953e-01	k: 2865785	n:4150000
KS ci ratio: 1.713988e-01	ci left: 1.152234e-04	ci right 1.370504e-04	k: 522	n:4150000
MAGEL2   4150000 perm   7612 sec   (545 perm/sec)   p_kst 1.257831e-04   p_cons 6.905506e-01   p_joint 4.192771e-04

Joint ci ratio: 9.382038e-02	ci left: 3.997877e-04	ci right 4.393747e-04	k: 1744	n:4160000
Cons ci ratio: 1.286636e-03	ci left: 6.900870e-01	ci right 6.909757e-01	k: 2872611	n:4160000
KS ci ratio: 1.710720e-01	ci left: 1.154066e-04	ci right 1.372223e-04	k: 524	n:4160000
MAGEL2   4160000 perm   7646 sec   (544 perm/sec)   p_kst 1.259615e-04   p_cons 6.905315e-01   p_joint 4.192308e-04

Joint ci ratio: 9.368625e-02	ci left: 3.999999e-04	ci right 4.395481e-04	k: 1749	n:4170000
Cons ci ratio: 1.285012e-03	ci left: 6.901143e-01	ci right 6.910019e-01	k: 2879628	n:4170000
KS ci ratio: 1.707471e-01	ci left: 1.155889e-04	ci right 1.373933e-04	k: 526	n:4170000
MAGEL2   4170000 perm   7681 sec   (543 perm/sec)   p_kst 1.261391e-04   p_cons 6.905583e-01   p_joint 4.194245e-04

Joint ci ratio: 9.357936e-02	ci left: 3.999775e-04	ci right 4.394759e-04	k: 1753	n:4180000
Cons ci ratio: 1.283480e-03	ci left: 6.901128e-01	ci right 6.909994e-01	k: 2886525	n:4180000
KS ci ratio: 1.704240e-01	ci left: 1.157704e-04	ci right 1.375635e-04	k: 528	n:4180000
MAGEL2   4180000 perm   7716 sec   (542 perm/sec)   p_kst 1.263158e-04   p_cons 6.905562e-01   p_joint 4.193780e-04

Joint ci ratio: 9.360611e-02	ci left: 3.987898e-04	ci right 4.381828e-04	k: 1752	n:4190000
Cons ci ratio: 1.281912e-03	ci left: 6.901252e-01	ci right 6.910106e-01	k: 2893480	n:4190000
KS ci ratio: 1.699427e-01	ci left: 1.161796e-04	ci right 1.379817e-04	k: 531	n:4190000
MAGEL2   4190000 perm   7750 sec   (541 perm/sec)   p_kst 1.267303e-04   p_cons 6.905680e-01   p_joint 4.181384e-04

Joint ci ratio: 9.357946e-02	ci left: 3.980728e-04	ci right 4.373832e-04	k: 1753	n:4200000
Cons ci ratio: 1.280342e-03	ci left: 6.901403e-01	ci right 6.910247e-01	k: 2900447	n:4200000
KS ci ratio: 1.699428e-01	ci left: 1.159030e-04	ci right 1.376531e-04	k: 531	n:4200000
MAGEL2   4200000 perm   7786 sec   (539 perm/sec)   p_kst 1.264286e-04   p_cons 6.905826e-01   p_joint 4.173810e-04

Joint ci ratio: 9.349954e-02	ci left: 3.978232e-04	ci right 4.370735e-04	k: 1756	n:4210000
Cons ci ratio: 1.278770e-03	ci left: 6.901575e-01	ci right 6.910408e-01	k: 2907423	n:4210000
KS ci ratio: 1.697833e-01	ci left: 1.158551e-04	ci right 1.375738e-04	k: 532	n:4210000
MAGEL2   4210000 perm   7820 sec   (538 perm/sec)   p_kst 1.263658e-04   p_cons 6.905993e-01   p_joint 4.171021e-04

Joint ci ratio: 9.341984e-02	ci left: 3.975747e-04	ci right 4.367653e-04	k: 1759	n:4220000
Cons ci ratio: 1.277238e-03	ci left: 6.901635e-01	ci right 6.910458e-01	k: 2914352	n:4220000
KS ci ratio: 1.697833e-01	ci left: 1.155806e-04	ci right 1.372478e-04	k: 532	n:4220000
MAGEL2   4220000 perm   7856 sec   (537 perm/sec)   p_kst 1.260664e-04   p_cons 6.906047e-01   p_joint 4.168246e-04

Joint ci ratio: 9.336683e-02	ci left: 3.970966e-04	ci right 4.362167e-04	k: 1761	n:4230000
Cons ci ratio: 1.275751e-03	ci left: 6.901559e-01	ci right 6.910372e-01	k: 2921224	n:4230000
KS ci ratio: 1.696243e-01	ci left: 1.155337e-04	ci right 1.371698e-04	k: 533	n:4230000
MAGEL2   4230000 perm   7891 sec   (536 perm/sec)   p_kst 1.260047e-04   p_cons 6.905967e-01   p_joint 4.163121e-04

Joint ci ratio: 9.326103e-02	ci left: 3.970815e-04	ci right 4.361532e-04	k: 1765	n:4240000
Cons ci ratio: 1.274262e-03	ci left: 6.901513e-01	ci right 6.910315e-01	k: 2928108	n:4240000
KS ci ratio: 1.693075e-01	ci left: 1.157129e-04	ci right 1.373379e-04	k: 535	n:4240000
MAGEL2   4240000 perm   7926 sec   (535 perm/sec)   p_kst 1.261792e-04   p_cons 6.905915e-01   p_joint 4.162736e-04

Joint ci ratio: 9.310298e-02	ci left: 3.975260e-04	ci right 4.365717e-04	k: 1771	n:4250000
Cons ci ratio: 1.272753e-03	ci left: 6.901546e-01	ci right 6.910338e-01	k: 2935026	n:4250000
KS ci ratio: 1.689925e-01	ci left: 1.158913e-04	ci right 1.375053e-04	k: 537	n:4250000
MAGEL2   4250000 perm   7962 sec   (534 perm/sec)   p_kst 1.263529e-04   p_cons 6.905944e-01   p_joint 4.167059e-04

Joint ci ratio: 9.294574e-02	ci left: 3.979685e-04	ci right 4.369880e-04	k: 1777	n:4260000
Cons ci ratio: 1.271209e-03	ci left: 6.901718e-01	ci right 6.910500e-01	k: 2942003	n:4260000
KS ci ratio: 1.689925e-01	ci left: 1.156193e-04	ci right 1.371825e-04	k: 537	n:4260000
MAGEL2   4260000 perm   7999 sec   (533 perm/sec)   p_kst 1.260563e-04   p_cons 6.906110e-01   p_joint 4.171362e-04

Joint ci ratio: 9.286744e-02	ci left: 3.977228e-04	ci right 4.366835e-04	k: 1780	n:4270000
Cons ci ratio: 1.269762e-03	ci left: 6.901580e-01	ci right 6.910351e-01	k: 2948848	n:4270000
KS ci ratio: 1.688357e-01	ci left: 1.155728e-04	ci right 1.371053e-04	k: 538	n:4270000
MAGEL2   4270000 perm   8034 sec   (531 perm/sec)   p_kst 1.259953e-04   p_cons 6.905967e-01   p_joint 4.168618e-04

Joint ci ratio: 9.276333e-02	ci left: 3.977064e-04	ci right 4.366195e-04	k: 1784	n:4280000
Cons ci ratio: 1.268318e-03	ci left: 6.901448e-01	ci right 6.910209e-01	k: 2955695	n:4280000
KS ci ratio: 1.685233e-01	ci left: 1.157504e-04	ci right 1.372720e-04	k: 540	n:4280000
MAGEL2   4280000 perm   8070 sec   (530 perm/sec)   p_kst 1.261682e-04   p_cons 6.905829e-01   p_joint 4.168224e-04

Joint ci ratio: 9.258194e-02	ci left: 3.983732e-04	ci right 4.372713e-04	k: 1791	n:4290000
Cons ci ratio: 1.266834e-03	ci left: 6.901470e-01	ci right 6.910220e-01	k: 2962608	n:4290000
KS ci ratio: 1.683678e-01	ci left: 1.157038e-04	ci right 1.371949e-04	k: 541	n:4290000
MAGEL2   4290000 perm   8106 sec   (529 perm/sec)   p_kst 1.261072e-04   p_cons 6.905846e-01   p_joint 4.174825e-04

Joint ci ratio: 9.242732e-02	ci left: 3.988099e-04	ci right 4.376820e-04	k: 1797	n:4300000
Cons ci ratio: 1.265356e-03	ci left: 6.901491e-01	ci right 6.910232e-01	k: 2969521	n:4300000
KS ci ratio: 1.679037e-01	ci left: 1.161031e-04	ci right 1.376028e-04	k: 544	n:4300000
MAGEL2   4300000 perm   8141 sec   (528 perm/sec)   p_kst 1.265116e-04   p_cons 6.905863e-01   p_joint 4.179070e-04

Joint ci ratio: 9.237598e-02	ci left: 3.983379e-04	ci right 4.371412e-04	k: 1799	n:4310000
Cons ci ratio: 1.263858e-03	ci left: 6.901594e-01	ci right 6.910324e-01	k: 2976469	n:4310000
KS ci ratio: 1.677499e-01	ci left: 1.160559e-04	ci right 1.375253e-04	k: 545	n:4310000
MAGEL2   4310000 perm   8177 sec   (527 perm/sec)   p_kst 1.264501e-04   p_cons 6.905961e-01   p_joint 4.174014e-04

Joint ci ratio: 9.258208e-02	ci left: 3.956067e-04	ci right 4.342347e-04	k: 1791	n:4320000
Cons ci ratio: 1.262410e-03	ci left: 6.901546e-01	ci right 6.910266e-01	k: 2983352	n:4320000
KS ci ratio: 1.675965e-01	ci left: 1.160091e-04	ci right 1.374482e-04	k: 546	n:4320000
MAGEL2   4320000 perm   8213 sec   (526 perm/sec)   p_kst 1.263889e-04   p_cons 6.905907e-01   p_joint 4.145833e-04

Joint ci ratio: 9.250469e-02	ci left: 3.953699e-04	ci right 4.339407e-04	k: 1794	n:4330000
Cons ci ratio: 1.260995e-03	ci left: 6.901403e-01	ci right 6.910114e-01	k: 2990194	n:4330000
KS ci ratio: 1.674435e-01	ci left: 1.159624e-04	ci right 1.373714e-04	k: 547	n:4330000
MAGEL2   4330000 perm   8250 sec   (525 perm/sec)   p_kst 1.263279e-04   p_cons 6.905760e-01   p_joint 4.143187e-04

Joint ci ratio: 9.229920e-02	ci left: 3.962596e-04	ci right 4.348267e-04	k: 1802	n:4340000
Cons ci ratio: 1.259587e-03	ci left: 6.901255e-01	ci right 6.909955e-01	k: 2997033	n:4340000
KS ci ratio: 1.671388e-01	ci left: 1.161367e-04	ci right 1.375349e-04	k: 549	n:4340000
MAGEL2   4340000 perm   8286 sec   (524 perm/sec)   p_kst 1.264977e-04   p_cons 6.905606e-01   p_joint 4.152074e-04

Joint ci ratio: 9.263394e-02	ci left: 3.924293e-04	ci right 4.307696e-04	k: 1789	n:4350000
Cons ci ratio: 1.258127e-03	ci left: 6.901297e-01	ci right 6.909988e-01	k: 3003955	n:4350000
KS ci ratio: 1.666847e-01	ci left: 1.165306e-04	ci right 1.379372e-04	k: 552	n:4350000
MAGEL2   4350000 perm   8322 sec   (523 perm/sec)   p_kst 1.268966e-04   p_cons 6.905644e-01   p_joint 4.112644e-04

Joint ci ratio: 9.247906e-02	ci left: 3.928735e-04	ci right 4.311896e-04	k: 1795	n:4360000
Cons ci ratio: 1.256668e-03	ci left: 6.901356e-01	ci right 6.910036e-01	k: 3010884	n:4360000
KS ci ratio: 1.663841e-01	ci left: 1.167029e-04	ci right 1.380986e-04	k: 554	n:4360000
MAGEL2   4360000 perm   8358 sec   (522 perm/sec)   p_kst 1.270642e-04   p_cons 6.905697e-01   p_joint 4.116972e-04

Joint ci ratio: 9.235058e-02	ci left: 3.930922e-04	ci right 4.313735e-04	k: 1800	n:4370000
Cons ci ratio: 1.255209e-03	ci left: 6.901430e-01	ci right 6.910100e-01	k: 3017820	n:4370000
KS ci ratio: 1.659362e-01	ci left: 1.170938e-04	ci right 1.384976e-04	k: 557	n:4370000
MAGEL2   4370000 perm   8395 sec   (521 perm/sec)   p_kst 1.274600e-04   p_cons 6.905767e-01   p_joint 4.118993e-04

Joint ci ratio: 9.229937e-02	ci left: 3.926408e-04	ci right 4.308558e-04	k: 1802	n:4380000
Cons ci ratio: 1.253759e-03	ci left: 6.901490e-01	ci right 6.910151e-01	k: 3024750	n:4380000
KS ci ratio: 1.659362e-01	ci left: 1.168265e-04	ci right 1.381814e-04	k: 557	n:4380000
MAGEL2   4380000 perm   8431 sec   (519 perm/sec)   p_kst 1.271689e-04   p_cons 6.905822e-01   p_joint 4.114155e-04

Joint ci ratio: 9.217165e-02	ci left: 3.928591e-04	ci right 4.310395e-04	k: 1807	n:4390000
Cons ci ratio: 1.252348e-03	ci left: 6.901432e-01	ci right 6.910083e-01	k: 3031628	n:4390000
KS ci ratio: 1.656396e-01	ci left: 1.169971e-04	ci right 1.383411e-04	k: 559	n:4390000
MAGEL2   4390000 perm   8468 sec   (518 perm/sec)   p_kst 1.273349e-04   p_cons 6.905759e-01   p_joint 4.116173e-04

Joint ci ratio: 9.214620e-02	ci left: 3.921883e-04	ci right 4.302924e-04	k: 1808	n:4400000
Cons ci ratio: 1.250917e-03	ci left: 6.901462e-01	ci right 6.910103e-01	k: 3038545	n:4400000
KS ci ratio: 1.656397e-01	ci left: 1.167312e-04	ci right 1.380267e-04	k: 559	n:4400000
MAGEL2   4400000 perm   8504 sec   (517 perm/sec)   p_kst 1.270455e-04   p_cons 6.905784e-01   p_joint 4.109091e-04

Joint ci ratio: 9.204450e-02	ci left: 3.921851e-04	ci right 4.302446e-04	k: 1812	n:4410000
Cons ci ratio: 1.249536e-03	ci left: 6.901339e-01	ci right 6.909970e-01	k: 3045394	n:4410000
KS ci ratio: 1.654920e-01	ci left: 1.166838e-04	ci right 1.379499e-04	k: 560	n:4410000
MAGEL2   4410000 perm   8541 sec   (516 perm/sec)   p_kst 1.269841e-04   p_cons 6.905655e-01   p_joint 4.108844e-04

Joint ci ratio: 9.181683e-02	ci left: 3.932872e-04	ci right 4.313542e-04	k: 1821	n:4420000
Cons ci ratio: 1.248091e-03	ci left: 6.901448e-01	ci right 6.910069e-01	k: 3052346	n:4420000
KS ci ratio: 1.651978e-01	ci left: 1.168536e-04	ci right 1.381090e-04	k: 562	n:4420000
MAGEL2   4420000 perm   8577 sec   (515 perm/sec)   p_kst 1.271493e-04   p_cons 6.905760e-01   p_joint 4.119910e-04

Joint ci ratio: 9.179168e-02	ci left: 3.926199e-04	ci right 4.306114e-04	k: 1822	n:4430000
Cons ci ratio: 1.246699e-03	ci left: 6.901391e-01	ci right 6.910002e-01	k: 3059224	n:4430000
KS ci ratio: 1.651978e-01	ci left: 1.165898e-04	ci right 1.377972e-04	k: 562	n:4430000
MAGEL2   4430000 perm   8613 sec   (514 perm/sec)   p_kst 1.268623e-04   p_cons 6.905698e-01   p_joint 4.112867e-04

Joint ci ratio: 9.171625e-02	ci left: 3.923958e-04	ci right 4.303327e-04	k: 1825	n:4440000
Cons ci ratio: 1.245323e-03	ci left: 6.901299e-01	ci right 6.909901e-01	k: 3066087	n:4440000
KS ci ratio: 1.649051e-01	ci left: 1.167591e-04	ci right 1.379559e-04	k: 564	n:4440000
MAGEL2   4440000 perm   8650 sec   (513 perm/sec)   p_kst 1.270270e-04   p_cons 6.905601e-01   p_joint 4.110360e-04

Joint ci ratio: 9.154093e-02	ci left: 3.930510e-04	ci right 4.309747e-04	k: 1832	n:4450000
Cons ci ratio: 1.244002e-03	ci left: 6.901031e-01	ci right 6.909623e-01	k: 3072871	n:4450000
KS ci ratio: 1.643244e-01	ci left: 1.173585e-04	ci right 1.385818e-04	k: 568	n:4450000
MAGEL2   4450000 perm   8687 sec   (512 perm/sec)   p_kst 1.276404e-04   p_cons 6.905328e-01   p_joint 4.116854e-04

Joint ci ratio: 9.151600e-02	ci left: 3.923888e-04	ci right 4.302378e-04	k: 1833	n:4460000
Cons ci ratio: 1.242569e-03	ci left: 6.901167e-01	ci right 6.909750e-01	k: 3079835	n:4460000
KS ci ratio: 1.643244e-01	ci left: 1.170954e-04	ci right 1.382711e-04	k: 568	n:4460000
MAGEL2   4460000 perm   8725 sec   (511 perm/sec)   p_kst 1.273543e-04   p_cons 6.905460e-01   p_joint 4.109865e-04

Joint ci ratio: 9.126746e-02	ci left: 3.936970e-04	ci right 4.315635e-04	k: 1843	n:4470000
Cons ci ratio: 1.241181e-03	ci left: 6.901160e-01	ci right 6.909733e-01	k: 3086735	n:4470000
KS ci ratio: 1.640364e-01	ci left: 1.172625e-04	ci right 1.384275e-04	k: 570	n:4470000
MAGEL2   4470000 perm   8762 sec   (510 perm/sec)   p_kst 1.275168e-04   p_cons 6.905447e-01   p_joint 4.123043e-04

Joint ci ratio: 9.119332e-02	ci left: 3.934726e-04	ci right 4.312851e-04	k: 1846	n:4480000
Cons ci ratio: 1.239802e-03	ci left: 6.901143e-01	ci right 6.909707e-01	k: 3093631	n:4480000
KS ci ratio: 1.640364e-01	ci left: 1.170007e-04	ci right 1.381185e-04	k: 570	n:4480000
MAGEL2   4480000 perm   8799 sec   (509 perm/sec)   p_kst 1.272321e-04   p_cons 6.905426e-01   p_joint 4.120536e-04

Joint ci ratio: 8.591111e-02	ci left: 4.435595e-04	ci right 4.835926e-04	k: 2080	n:4490000
Cons ci ratio: 1.238409e-03	ci left: 6.901187e-01	ci right 6.909741e-01	k: 3100554	n:4490000
KS ci ratio: 1.637499e-01	ci left: 1.171673e-04	ci right 1.382746e-04	k: 572	n:4490000
MAGEL2   4490000 perm   8837 sec   (508 perm/sec)   p_kst 1.273942e-04   p_cons 6.905465e-01   p_joint 4.632517e-04

Joint ci ratio: 8.578751e-02	ci left: 4.438785e-04	ci right 4.838799e-04	k: 2086	n:4500000
Cons ci ratio: 1.237057e-03	ci left: 6.901107e-01	ci right 6.909651e-01	k: 3107421	n:4500000
KS ci ratio: 1.634648e-01	ci left: 1.173332e-04	ci right 1.384299e-04	k: 574	n:4500000
MAGEL2   4500000 perm   8873 sec   (507 perm/sec)   p_kst 1.275556e-04   p_cons 6.905380e-01   p_joint 4.635556e-04

Joint ci ratio: 8.564398e-02	ci left: 4.444132e-04	ci right 4.843924e-04	k: 2093	n:4510000
Cons ci ratio: 1.235696e-03	ci left: 6.901073e-01	ci right 6.909608e-01	k: 3114309	n:4510000
KS ci ratio: 1.631813e-01	ci left: 1.174984e-04	ci right 1.385846e-04	k: 576	n:4510000
MAGEL2   4510000 perm   8911 sec   (506 perm/sec)   p_kst 1.277162e-04   p_cons 6.905341e-01   p_joint 4.640798e-04

Joint ci ratio: 8.556230e-02	ci left: 4.442960e-04	ci right 4.842246e-04	k: 2097	n:4520000
Cons ci ratio: 1.234318e-03	ci left: 6.901112e-01	ci right 6.909638e-01	k: 3121230	n:4520000
KS ci ratio: 1.630401e-01	ci left: 1.174506e-04	ci right 1.385082e-04	k: 577	n:4520000
MAGEL2   4520000 perm   8949 sec   (505 perm/sec)   p_kst 1.276549e-04   p_cons 6.905376e-01   p_joint 4.639381e-04

Joint ci ratio: 8.544020e-02	ci left: 4.446114e-04	ci right 4.845085e-04	k: 2103	n:4530000
Cons ci ratio: 1.233010e-03	ci left: 6.900926e-01	ci right 6.909442e-01	k: 3128049	n:4530000
KS ci ratio: 1.624788e-01	ci left: 1.180384e-04	ci right 1.391214e-04	k: 581	n:4530000
MAGEL2   4530000 perm   8987 sec   (504 perm/sec)   p_kst 1.282561e-04   p_cons 6.905185e-01   p_joint 4.642384e-04

Joint ci ratio: 8.537937e-02	ci left: 4.442787e-04	ci right 4.841162e-04	k: 2106	n:4540000
Cons ci ratio: 1.231697e-03	ci left: 6.900772e-01	ci right 6.909279e-01	k: 3134882	n:4540000
KS ci ratio: 1.623394e-01	ci left: 1.179897e-04	ci right 1.390442e-04	k: 582	n:4540000
MAGEL2   4540000 perm   9024 sec   (503 perm/sec)   p_kst 1.281938e-04   p_cons 6.905026e-01   p_joint 4.638767e-04

Joint ci ratio: 8.529845e-02	ci left: 4.441626e-04	ci right 4.839501e-04	k: 2110	n:4550000
Cons ci ratio: 1.230293e-03	ci left: 6.900950e-01	ci right 6.909448e-01	k: 3141866	n:4550000
KS ci ratio: 1.620616e-01	ci left: 1.181521e-04	ci right 1.391960e-04	k: 584	n:4550000
MAGEL2   4550000 perm   9062 sec   (502 perm/sec)   p_kst 1.283516e-04   p_cons 6.905200e-01   p_joint 4.637363e-04

Joint ci ratio: 8.521776e-02	ci left: 4.440471e-04	ci right 4.837847e-04	k: 2114	n:4560000
Cons ci ratio: 1.228885e-03	ci left: 6.901156e-01	ci right 6.909644e-01	k: 3148863	n:4560000
KS ci ratio: 1.619233e-01	ci left: 1.181034e-04	ci right 1.391189e-04	k: 585	n:4560000
MAGEL2   4560000 perm   9100 sec   (501 perm/sec)   p_kst 1.282895e-04   p_cons 6.905401e-01   p_joint 4.635965e-04

Joint ci ratio: 8.560335e-02	ci left: 4.390066e-04	ci right 4.784798e-04	k: 2095	n:4570000
Cons ci ratio: 1.227526e-03	ci left: 6.901210e-01	ci right 6.909689e-01	k: 3155791	n:4570000
KS ci ratio: 1.619233e-01	ci left: 1.178450e-04	ci right 1.388145e-04	k: 585	n:4570000
MAGEL2   4570000 perm   9137 sec   (500 perm/sec)   p_kst 1.280088e-04   p_cons 6.905451e-01   p_joint 4.584245e-04

Joint ci ratio: 8.546074e-02	ci left: 4.395438e-04	ci right 4.789961e-04	k: 2102	n:4580000
Cons ci ratio: 1.226158e-03	ci left: 6.901308e-01	ci right 6.909777e-01	k: 3162739	n:4580000
KS ci ratio: 1.613734e-01	ci left: 1.184257e-04	ci right 1.394201e-04	k: 589	n:4580000
MAGEL2   4580000 perm   9176 sec   (499 perm/sec)   p_kst 1.286026e-04   p_cons 6.905544e-01   p_joint 4.589520e-04

Joint ci ratio: 8.535932e-02	ci left: 4.396522e-04	ci right 4.790652e-04	k: 2107	n:4590000
Cons ci ratio: 1.224822e-03	ci left: 6.901313e-01	ci right 6.909774e-01	k: 3169645	n:4590000
KS ci ratio: 1.612369e-01	ci left: 1.183768e-04	ci right 1.393430e-04	k: 590	n:4590000
MAGEL2   4590000 perm   9215 sec   (498 perm/sec)   p_kst 1.285403e-04   p_cons 6.905545e-01   p_joint 4.590414e-04

Joint ci ratio: 8.525827e-02	ci left: 4.397603e-04	ci right 4.791339e-04	k: 2112	n:4600000
Cons ci ratio: 1.223473e-03	ci left: 6.901376e-01	ci right 6.909826e-01	k: 3176577	n:4600000
KS ci ratio: 1.611006e-01	ci left: 1.183281e-04	ci right 1.392662e-04	k: 591	n:4600000
MAGEL2   4600000 perm   9254 sec   (497 perm/sec)   p_kst 1.284783e-04   p_cons 6.905602e-01   p_joint 4.591304e-04

Joint ci ratio: 8.556269e-02	ci left: 4.356220e-04	ci right 4.747713e-04	k: 2097	n:4610000
Cons ci ratio: 1.222170e-03	ci left: 6.901292e-01	ci right 6.909734e-01	k: 3183442	n:4610000
KS ci ratio: 1.611006e-01	ci left: 1.180714e-04	ci right 1.389641e-04	k: 591	n:4610000
MAGEL2   4610000 perm   9292 sec   (496 perm/sec)   p_kst 1.281996e-04   p_cons 6.905514e-01   p_joint 4.548807e-04

Joint ci ratio: 8.546091e-02	ci left: 4.357382e-04	ci right 4.748490e-04	k: 2102	n:4620000
Cons ci ratio: 1.220830e-03	ci left: 6.901356e-01	ci right 6.909789e-01	k: 3190375	n:4620000
KS ci ratio: 1.606940e-01	ci left: 1.184390e-04	ci right 1.393388e-04	k: 594	n:4620000
MAGEL2   4620000 perm   9330 sec   (495 perm/sec)   p_kst 1.285714e-04   p_cons 6.905574e-01   p_joint 4.549784e-04

Joint ci ratio: 8.542033e-02	ci left: 4.352198e-04	ci right 4.742646e-04	k: 2104	n:4630000
Cons ci ratio: 1.219561e-03	ci left: 6.901187e-01	ci right 6.909610e-01	k: 3197200	n:4630000
KS ci ratio: 1.605591e-01	ci left: 1.183905e-04	ci right 1.392625e-04	k: 595	n:4630000
MAGEL2   4630000 perm   9369 sec   (494 perm/sec)   p_kst 1.285097e-04   p_cons 6.905400e-01   p_joint 4.544276e-04

Joint ci ratio: 8.550168e-02	ci left: 4.334382e-04	ci right 4.723620e-04	k: 2100	n:4640000
Cons ci ratio: 1.218236e-03	ci left: 6.901227e-01	ci right 6.909641e-01	k: 3204122	n:4640000
KS ci ratio: 1.602904e-01	ci left: 1.185491e-04	ci right 1.394107e-04	k: 597	n:4640000
MAGEL2   4640000 perm   9407 sec   (493 perm/sec)   p_kst 1.286638e-04   p_cons 6.905435e-01   p_joint 4.525862e-04

Joint ci ratio: 8.540012e-02	ci left: 4.335583e-04	ci right 4.724445e-04	k: 2105	n:4650000
Cons ci ratio: 1.216949e-03	ci left: 6.901147e-01	ci right 6.909552e-01	k: 3210988	n:4650000
KS ci ratio: 1.601565e-01	ci left: 1.185006e-04	ci right 1.393345e-04	k: 598	n:4650000
MAGEL2   4650000 perm   9446 sec   (492 perm/sec)   p_kst 1.286022e-04   p_cons 6.905351e-01   p_joint 4.526882e-04

Joint ci ratio: 8.533937e-02	ci left: 4.332580e-04	ci right 4.720881e-04	k: 2108	n:4660000
Cons ci ratio: 1.215654e-03	ci left: 6.901112e-01	ci right 6.909508e-01	k: 3217875	n:4660000
KS ci ratio: 1.601565e-01	ci left: 1.182463e-04	ci right 1.390355e-04	k: 598	n:4660000
MAGEL2   4660000 perm   9487 sec   (491 perm/sec)   p_kst 1.283262e-04   p_cons 6.905311e-01   p_joint 4.523605e-04

Joint ci ratio: 8.529896e-02	ci left: 4.327494e-04	ci right 4.715147e-04	k: 2110	n:4670000
Cons ci ratio: 1.214364e-03	ci left: 6.901073e-01	ci right 6.909460e-01	k: 3224760	n:4670000
KS ci ratio: 1.600230e-01	ci left: 1.181986e-04	ci right 1.389605e-04	k: 599	n:4670000
MAGEL2   4670000 perm   9526 sec   (490 perm/sec)   p_kst 1.282655e-04   p_cons 6.905268e-01   p_joint 4.518201e-04

Joint ci ratio: 8.515786e-02	ci left: 4.332885e-04	ci right 4.720347e-04	k: 2117	n:4680000
Cons ci ratio: 1.213096e-03	ci left: 6.900972e-01	ci right 6.909351e-01	k: 3231616	n:4680000
KS ci ratio: 1.598899e-01	ci left: 1.181512e-04	ci right 1.388858e-04	k: 600	n:4680000
MAGEL2   4680000 perm   9566 sec   (489 perm/sec)   p_kst 1.282051e-04   p_cons 6.905162e-01   p_joint 4.523504e-04

Joint ci ratio: 8.507757e-02	ci left: 4.331994e-04	ci right 4.718993e-04	k: 2121	n:4690000
Cons ci ratio: 1.211849e-03	ci left: 6.900810e-01	ci right 6.909179e-01	k: 3238443	n:4690000
KS ci ratio: 1.598899e-01	ci left: 1.178993e-04	ci right 1.385897e-04	k: 600	n:4690000
MAGEL2   4690000 perm   9604 sec   (488 perm/sec)   p_kst 1.279318e-04   p_cons 6.904996e-01   p_joint 4.522388e-04

Joint ci ratio: 8.505756e-02	ci left: 4.324859e-04	ci right 4.711126e-04	k: 2122	n:4700000
Cons ci ratio: 1.210554e-03	ci left: 6.900831e-01	ci right 6.909192e-01	k: 3245356	n:4700000
KS ci ratio: 1.597570e-01	ci left: 1.178527e-04	ci right 1.385161e-04	k: 601	n:4700000
MAGEL2   4700000 perm   9644 sec   (487 perm/sec)   p_kst 1.278723e-04   p_cons 6.905013e-01   p_joint 4.514894e-04

Joint ci ratio: 8.495757e-02	ci left: 4.326067e-04	ci right 4.711964e-04	k: 2127	n:4710000
Cons ci ratio: 1.209285e-03	ci left: 6.900778e-01	ci right 6.909130e-01	k: 3252234	n:4710000
KS ci ratio: 1.596245e-01	ci left: 1.178063e-04	ci right 1.384428e-04	k: 602	n:4710000
MAGEL2   4710000 perm   9683 sec   (486 perm/sec)   p_kst 1.278132e-04   p_cons 6.904955e-01   p_joint 4.515924e-04

Joint ci ratio: 8.479829e-02	ci left: 4.333491e-04	ci right 4.719290e-04	k: 2135	n:4720000
Cons ci ratio: 1.208017e-03	ci left: 6.900732e-01	ci right 6.909075e-01	k: 3259115	n:4720000
KS ci ratio: 1.593604e-01	ci left: 1.179635e-04	ci right 1.385901e-04	k: 604	n:4720000
MAGEL2   4720000 perm   9722 sec   (485 perm/sec)   p_kst 1.279661e-04   p_cons 6.904905e-01   p_joint 4.523305e-04

Joint ci ratio: 8.465966e-02	ci left: 4.338815e-04	ci right 4.724425e-04	k: 2142	n:4730000
Cons ci ratio: 1.206747e-03	ci left: 6.900711e-01	ci right 6.909046e-01	k: 3266008	n:4730000
KS ci ratio: 1.589668e-01	ci left: 1.183231e-04	ci right 1.389566e-04	k: 607	n:4730000
MAGEL2   4730000 perm   9761 sec   (485 perm/sec)   p_kst 1.283298e-04   p_cons 6.904879e-01   p_joint 4.528541e-04

Joint ci ratio: 8.456107e-02	ci left: 4.339987e-04	ci right 4.725230e-04	k: 2147	n:4740000
Cons ci ratio: 1.205465e-03	ci left: 6.900745e-01	ci right 6.909071e-01	k: 3272927	n:4740000
KS ci ratio: 1.585760e-01	ci left: 1.186813e-04	ci right 1.393215e-04	k: 610	n:4740000
MAGEL2   4740000 perm   9801 sec   (484 perm/sec)   p_kst 1.286920e-04   p_cons 6.904909e-01   p_joint 4.529536e-04

Joint ci ratio: 8.538025e-02	ci left: 4.246367e-04	ci right 4.627134e-04	k: 2106	n:4750000
Cons ci ratio: 1.204190e-03	ci left: 6.900769e-01	ci right 6.909086e-01	k: 3279841	n:4750000
KS ci ratio: 1.583171e-01	ci left: 1.188358e-04	ci right 1.394659e-04	k: 612	n:4750000
MAGEL2   4750000 perm   9841 sec   (483 perm/sec)   p_kst 1.288421e-04   p_cons 6.904928e-01   p_joint 4.433684e-04

Joint ci ratio: 8.689959e-02	ci left: 4.087387e-04	ci right 4.460751e-04	k: 2033	n:4760000
Cons ci ratio: 1.202921e-03	ci left: 6.900786e-01	ci right 6.909094e-01	k: 3286752	n:4760000
KS ci ratio: 1.583171e-01	ci left: 1.185861e-04	ci right 1.391729e-04	k: 612	n:4760000
MAGEL2   4760000 perm   9880 sec   (482 perm/sec)   p_kst 1.285714e-04   p_cons 6.904941e-01   p_joint 4.271008e-04

Joint ci ratio: 8.672917e-02	ci left: 4.095225e-04	ci right 4.468534e-04	k: 2041	n:4770000
Cons ci ratio: 1.201689e-03	ci left: 6.900686e-01	ci right 6.908985e-01	k: 3293607	n:4770000
KS ci ratio: 1.578030e-01	ci left: 1.191429e-04	ci right 1.397528e-04	k: 616	n:4770000
MAGEL2   4770000 perm   9919 sec   (481 perm/sec)   p_kst 1.291405e-04   p_cons 6.904836e-01   p_joint 4.278826e-04

Joint ci ratio: 8.664435e-02	ci left: 4.094845e-04	ci right 4.467736e-04	k: 2045	n:4780000
Cons ci ratio: 1.200396e-03	ci left: 6.900816e-01	ci right 6.909107e-01	k: 3300572	n:4780000
KS ci ratio: 1.576753e-01	ci left: 1.190946e-04	ci right 1.396779e-04	k: 617	n:4780000
MAGEL2   4780000 perm   9960 sec   (480 perm/sec)   p_kst 1.290795e-04   p_cons 6.904962e-01   p_joint 4.278243e-04

Joint ci ratio: 8.664439e-02	ci left: 4.086296e-04	ci right 4.458408e-04	k: 2045	n:4790000
Cons ci ratio: 1.199128e-03	ci left: 6.900868e-01	ci right 6.909150e-01	k: 3307500	n:4790000
KS ci ratio: 1.576753e-01	ci left: 1.188460e-04	ci right 1.393863e-04	k: 617	n:4790000
MAGEL2   4790000 perm   10000 sec   (479 perm/sec)   p_kst 1.288100e-04   p_cons 6.905010e-01   p_joint 4.269311e-04

Joint ci ratio: 8.647546e-02	ci left: 4.094089e-04	ci right 4.466147e-04	k: 2053	n:4800000
Cons ci ratio: 1.197873e-03	ci left: 6.900891e-01	ci right 6.909165e-01	k: 3314414	n:4800000
KS ci ratio: 1.572940e-01	ci left: 1.191988e-04	ci right 1.397456e-04	k: 620	n:4800000
MAGEL2   4800000 perm   10039 sec   (478 perm/sec)   p_kst 1.291667e-04   p_cons 6.905029e-01   p_joint 4.277083e-04

Joint ci ratio: 8.641239e-02	ci left: 4.091679e-04	ci right 4.463234e-04	k: 2056	n:4810000
Cons ci ratio: 1.196596e-03	ci left: 6.901008e-01	ci right 6.909273e-01	k: 3321373	n:4810000
KS ci ratio: 1.572940e-01	ci left: 1.189509e-04	ci right 1.394550e-04	k: 620	n:4810000
MAGEL2   4810000 perm   10079 sec   (477 perm/sec)   p_kst 1.288981e-04   p_cons 6.905141e-01   p_joint 4.274428e-04

Joint ci ratio: 8.637043e-02	ci left: 4.087250e-04	ci right 4.458213e-04	k: 2058	n:4820000
Cons ci ratio: 1.195392e-03	ci left: 6.900877e-01	ci right 6.909133e-01	k: 3328213	n:4820000
KS ci ratio: 1.572940e-01	ci left: 1.187042e-04	ci right 1.391657e-04	k: 620	n:4820000
MAGEL2   4820000 perm   10119 sec   (476 perm/sec)   p_kst 1.286307e-04   p_cons 6.905006e-01   p_joint 4.269710e-04

Joint ci ratio: 8.278741e-02	ci left: 4.447637e-04	ci right 4.833755e-04	k: 2240	n:4830000
Cons ci ratio: 1.194164e-03	ci left: 6.900846e-01	ci right 6.909094e-01	k: 3335101	n:4830000
KS ci ratio: 1.570413e-01	ci left: 1.188562e-04	ci right 1.393079e-04	k: 622	n:4830000
MAGEL2   4830000 perm   10158 sec   (475 perm/sec)   p_kst 1.287785e-04   p_cons 6.904971e-01   p_joint 4.637681e-04

Joint ci ratio: 8.271363e-02	ci left: 4.446541e-04	ci right 4.832203e-04	k: 2244	n:4840000
Cons ci ratio: 1.192916e-03	ci left: 6.900898e-01	ci right 6.909137e-01	k: 3342029	n:4840000
KS ci ratio: 1.567899e-01	ci left: 1.190076e-04	ci right 1.394495e-04	k: 624	n:4840000
MAGEL2   4840000 perm   10198 sec   (475 perm/sec)   p_kst 1.289256e-04   p_cons 6.905019e-01   p_joint 4.636364e-04

Joint ci ratio: 8.265844e-02	ci left: 4.443430e-04	ci right 4.828554e-04	k: 2247	n:4850000
Cons ci ratio: 1.191733e-03	ci left: 6.900733e-01	ci right 6.908964e-01	k: 3348852	n:4850000
KS ci ratio: 1.566646e-01	ci left: 1.189603e-04	ci right 1.393763e-04	k: 625	n:4850000
MAGEL2   4850000 perm   10238 sec   (474 perm/sec)   p_kst 1.288660e-04   p_cons 6.904849e-01   p_joint 4.632990e-04

Joint ci ratio: 8.258500e-02	ci left: 4.442348e-04	ci right 4.827019e-04	k: 2251	n:4860000
Cons ci ratio: 1.190536e-03	ci left: 6.900631e-01	ci right 6.908853e-01	k: 3355705	n:4860000
KS ci ratio: 1.565396e-01	ci left: 1.189133e-04	ci right 1.393033e-04	k: 626	n:4860000
MAGEL2   4860000 perm   10278 sec   (473 perm/sec)   p_kst 1.288066e-04   p_cons 6.904743e-01   p_joint 4.631687e-04

Joint ci ratio: 8.253006e-02	ci left: 4.439259e-04	ci right 4.823394e-04	k: 2254	n:4870000
Cons ci ratio: 1.189341e-03	ci left: 6.900533e-01	ci right 6.908746e-01	k: 3362560	n:4870000
KS ci ratio: 1.564149e-01	ci left: 1.188664e-04	ci right 1.392306e-04	k: 627	n:4870000
MAGEL2   4870000 perm   10318 sec   (472 perm/sec)   p_kst 1.287474e-04   p_cons 6.904641e-01   p_joint 4.628337e-04

Joint ci ratio: 8.249351e-02	ci left: 4.434176e-04	ci right 4.817693e-04	k: 2256	n:4880000
Cons ci ratio: 1.188095e-03	ci left: 6.900636e-01	ci right 6.908841e-01	k: 3369513	n:4880000
KS ci ratio: 1.564149e-01	ci left: 1.186228e-04	ci right 1.389453e-04	k: 627	n:4880000
MAGEL2   4880000 perm   10359 sec   (471 perm/sec)   p_kst 1.284836e-04   p_cons 6.904740e-01   p_joint 4.622951e-04

Joint ci ratio: 8.238407e-02	ci left: 4.437125e-04	ci right 4.820364e-04	k: 2262	n:4890000
Cons ci ratio: 1.186864e-03	ci left: 6.900696e-01	ci right 6.908893e-01	k: 3376445	n:4890000
KS ci ratio: 1.562906e-01	ci left: 1.185767e-04	ci right 1.388737e-04	k: 628	n:4890000
MAGEL2   4890000 perm   10401 sec   (470 perm/sec)   p_kst 1.284254e-04   p_cons 6.904796e-01   p_joint 4.625767e-04

Joint ci ratio: 8.229320e-02	ci left: 4.438064e-04	ci right 4.820941e-04	k: 2267	n:4900000
Cons ci ratio: 1.185663e-03	ci left: 6.900662e-01	ci right 6.908850e-01	k: 3383331	n:4900000
KS ci ratio: 1.561665e-01	ci left: 1.185308e-04	ci right 1.388023e-04	k: 629	n:4900000
MAGEL2   4900000 perm   10444 sec   (469 perm/sec)   p_kst 1.283673e-04   p_cons 6.904757e-01   p_joint 4.626531e-04

Joint ci ratio: 8.225696e-02	ci left: 4.433014e-04	ci right 4.815279e-04	k: 2269	n:4910000
Cons ci ratio: 1.184476e-03	ci left: 6.900589e-01	ci right 6.908769e-01	k: 3390198	n:4910000
KS ci ratio: 1.561665e-01	ci left: 1.182894e-04	ci right 1.385196e-04	k: 629	n:4910000
MAGEL2   4910000 perm   10486 sec   (468 perm/sec)   p_kst 1.281059e-04   p_cons 6.904680e-01   p_joint 4.621181e-04

Joint ci ratio: 8.106875e-02	ci left: 4.557403e-04	ci right 4.944450e-04	k: 2336	n:4920000
Cons ci ratio: 1.183306e-03	ci left: 6.900468e-01	ci right 6.908640e-01	k: 3397041	n:4920000
KS ci ratio: 1.481515e-01	ci left: 1.317354e-04	ci right 1.530065e-04	k: 699	n:4920000
MAGEL2   4920000 perm   10526 sec   (467 perm/sec)   p_kst 1.420732e-04   p_cons 6.904555e-01   p_joint 4.747967e-04

Joint ci ratio: 8.089582e-02	ci left: 4.568033e-04	ci right 4.955115e-04	k: 2346	n:4930000
Cons ci ratio: 1.182128e-03	ci left: 6.900390e-01	ci right 6.908553e-01	k: 3403905	n:4930000
KS ci ratio: 1.478350e-01	ci left: 1.320542e-04	ci right 1.533272e-04	k: 702	n:4930000
MAGEL2   4930000 perm   10567 sec   (467 perm/sec)   p_kst 1.423935e-04   p_cons 6.904473e-01   p_joint 4.758621e-04

Joint ci ratio: 8.080979e-02	ci left: 4.568702e-04	ci right 4.955410e-04	k: 2351	n:4940000
Cons ci ratio: 1.180949e-03	ci left: 6.900328e-01	ci right 6.908484e-01	k: 3410777	n:4940000
KS ci ratio: 1.478351e-01	ci left: 1.317868e-04	ci right 1.530168e-04	k: 702	n:4940000
MAGEL2   4940000 perm   10608 sec   (466 perm/sec)   p_kst 1.421053e-04   p_cons 6.904407e-01   p_joint 4.759109e-04

Joint ci ratio: 8.101686e-02	ci left: 4.535720e-04	ci right 4.920667e-04	k: 2339	n:4950000
Cons ci ratio: 1.179724e-03	ci left: 6.900446e-01	ci right 6.908594e-01	k: 3417738	n:4950000
KS ci ratio: 1.476252e-01	ci left: 1.319097e-04	ci right 1.531267e-04	k: 704	n:4950000
MAGEL2   4950000 perm   10651 sec   (465 perm/sec)   p_kst 1.422222e-04   p_cons 6.904521e-01   p_joint 4.725253e-04

Joint ci ratio: 8.099959e-02	ci left: 4.528551e-04	ci right 4.912803e-04	k: 2340	n:4960000
Cons ci ratio: 1.178515e-03	ci left: 6.900520e-01	ci right 6.908659e-01	k: 3424677	n:4960000
KS ci ratio: 1.476252e-01	ci left: 1.316438e-04	ci right 1.528180e-04	k: 704	n:4960000
MAGEL2   4960000 perm   10694 sec   (464 perm/sec)   p_kst 1.419355e-04   p_cons 6.904591e-01   p_joint 4.717742e-04

Joint ci ratio: 8.084430e-02	ci left: 4.537182e-04	ci right 4.921393e-04	k: 2349	n:4970000
Cons ci ratio: 1.177363e-03	ci left: 6.900400e-01	ci right 6.908531e-01	k: 3431520	n:4970000
KS ci ratio: 1.473121e-01	ci left: 1.319602e-04	ci right 1.531364e-04	k: 707	n:4970000
MAGEL2   4970000 perm   10735 sec   (463 perm/sec)   p_kst 1.422535e-04   p_cons 6.904467e-01   p_joint 4.726358e-04

Joint ci ratio: 8.108634e-02	ci left: 4.500527e-04	ci right 4.882830e-04	k: 2335	n:4980000
Cons ci ratio: 1.176188e-03	ci left: 6.900377e-01	ci right 6.908500e-01	k: 3438411	n:4980000
KS ci ratio: 1.471045e-01	ci left: 1.320821e-04	ci right 1.532452e-04	k: 709	n:4980000
MAGEL2   4980000 perm   10776 sec   (462 perm/sec)   p_kst 1.423695e-04   p_cons 6.904440e-01   p_joint 4.688755e-04

Joint ci ratio: 8.099970e-02	ci left: 4.501325e-04	ci right 4.883268e-04	k: 2340	n:4990000
Cons ci ratio: 1.175042e-03	ci left: 6.900262e-01	ci right 6.908377e-01	k: 3445256	n:4990000
KS ci ratio: 1.471045e-01	ci left: 1.318174e-04	ci right 1.529381e-04	k: 709	n:4990000
MAGEL2   4990000 perm   10817 sec   (461 perm/sec)   p_kst 1.420842e-04   p_cons 6.904321e-01   p_joint 4.689379e-04

Joint ci ratio: 8.093060e-02	ci left: 4.500160e-04	ci right 4.881663e-04	k: 2344	n:5000000
Cons ci ratio: 1.173890e-03	ci left: 6.900178e-01	ci right 6.908284e-01	k: 3452116	n:5000000
KS ci ratio: 1.470010e-01	ci left: 1.317464e-04	ci right 1.528396e-04	k: 710	n:5000000
MAGEL2   5000000 perm   10858 sec   (460 perm/sec)   p_kst 1.420000e-04   p_cons 6.904232e-01   p_joint 4.688000e-04

Outputting figure to mutsig2_images.part000000000101/MAGEL2.11_3754_5000000_0.000142_0.69042_0.0004688.png
                gene_name: MAGEL2
               theta_stop: 0.15 
                    nperm: 5000000 
                     p_ks: 0.00014 
        ci_ks_bounds_left: 0.00013 
       ci_ks_bounds_right: 0.00015 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.00047 
     ci_joint_bounds_left: 0.00045 
    ci_joint_bounds_right: 0.00049 

Current progress: 11 percent done.
MAN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
KS ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
MAN2A1   10000 perm   2 sec   (4332 perm/sec)   p_kst 3.512000e-01   p_cons 3.444000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2A1.11_3523_10000_0.3512_0.3444_0.4195.png
                gene_name: MAN2A1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 13 percent done.
MAP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
MAP1B   10000 perm   2 sec   (4085 perm/sec)   p_kst 1.374000e-01   p_cons 3.182000e-01   p_joint 1.699000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1B.11_7435_10000_0.1374_0.3182_0.1699.png
                gene_name: MAP1B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 14 percent done.
MAGEA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
MAGEA11   10000 perm   2 sec   (5237 perm/sec)   p_kst 7.933000e-01   p_cons 5.160000e-01   p_joint 9.237000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA11.9_1319_10000_0.7933_0.516_0.9237.png
                gene_name: MAGEA11
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 16 percent done.
MAGEB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
KS ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
MAGEB18   10000 perm   2 sec   (5643 perm/sec)   p_kst 8.572000e-01   p_cons 6.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEB18.9_1036_10000_0.8572_0.641_1.png
                gene_name: MAGEB18
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
MAGEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
MAGEE1   10000 perm   2 sec   (5037 perm/sec)   p_kst 4.110000e-02   p_cons 2.311000e-01   p_joint 4.380000e-02

Joint ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
Cons ci ratio: 5.206288e-02	ci left: 2.150674e-01	ci right 2.266139e-01	k: 4416	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
MAGEE1   20000 perm   4 sec   (4622 perm/sec)   p_kst 4.185000e-02   p_cons 2.208000e-01   p_joint 5.745000e-02

Joint ci ratio: 8.190635e-02	ci left: 6.802068e-02	ci right 7.386274e-02	k: 2127	n:30000
Cons ci ratio: 4.083377e-02	ci left: 2.301782e-01	ci right 2.398065e-01	k: 7049	n:30000
KS ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
MAGEE1   30000 perm   7 sec   (4478 perm/sec)   p_kst 4.266667e-02   p_cons 2.349667e-01   p_joint 7.090000e-02

Joint ci ratio: 8.413514e-02	ci left: 4.930521e-02	ci right 5.366020e-02	k: 2058	n:40000
Cons ci ratio: 3.539020e-02	ci left: 2.305536e-01	ci right 2.388849e-01	k: 9388	n:40000
KS ci ratio: 9.294503e-02	ci left: 4.059277e-02	ci right 4.457398e-02	k: 1702	n:40000
MAGEE1   40000 perm   9 sec   (4361 perm/sec)   p_kst 4.255000e-02   p_cons 2.347000e-01   p_joint 5.145000e-02

Outputting figure to mutsig2_images.part000000000101/MAGEE1.9_2878_40000_0.04255_0.2347_0.05145.png
                gene_name: MAGEE1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 19 percent done.
MAGEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
MAGEE2   10000 perm   2 sec   (5801 perm/sec)   p_kst 1.788000e-01   p_cons 7.100000e-03   p_joint 4.530000e-02

Joint ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
Cons ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
KS ci ratio: 5.868446e-02	ci left: 1.770200e-01	ci right 1.877725e-01	k: 3647	n:20000
MAGEE2   20000 perm   4 sec   (5168 perm/sec)   p_kst 1.823500e-01   p_cons 8.200000e-03   p_joint 1.760000e-02

Joint ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
Cons ci ratio: 2.520166e-01	ci left: 6.991898e-03	ci right 9.038438e-03	k: 239	n:30000
KS ci ratio: 4.815282e-02	ci left: 1.765585e-01	ci right 1.853034e-01	k: 5427	n:30000
MAGEE2   30000 perm   6 sec   (4884 perm/sec)   p_kst 1.809000e-01   p_cons 7.966667e-03   p_joint 1.866667e-02

Joint ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
Cons ci ratio: 2.210564e-01	ci left: 6.937641e-03	ci right 8.684950e-03	k: 311	n:40000
KS ci ratio: 4.152779e-02	ci left: 1.783783e-01	ci right 1.859679e-01	k: 7286	n:40000
MAGEE2   40000 perm   9 sec   (4655 perm/sec)   p_kst 1.821500e-01   p_cons 7.775000e-03   p_joint 3.542500e-02

Joint ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
Cons ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
KS ci ratio: 3.716048e-02	ci left: 1.786464e-01	ci right 1.854306e-01	k: 9101	n:50000
MAGEE2   50000 perm   11 sec   (4533 perm/sec)   p_kst 1.820200e-01   p_cons 6.440000e-03   p_joint 2.452000e-02

Joint ci ratio: 1.250377e-01	ci left: 1.510805e-02	ci right 1.713914e-02	k: 966	n:60000
Cons ci ratio: 1.955902e-01	ci left: 5.999434e-03	ci right 7.315634e-03	k: 398	n:60000
KS ci ratio: 3.405126e-02	ci left: 1.778271e-01	ci right 1.840038e-01	k: 10854	n:60000
MAGEE2   60000 perm   14 sec   (4437 perm/sec)   p_kst 1.809000e-01   p_cons 6.633333e-03   p_joint 1.610000e-02

Joint ci ratio: 1.101486e-01	ci left: 1.679168e-02	ci right 1.876287e-02	k: 1243	n:70000
Cons ci ratio: 1.829706e-01	ci left: 5.918082e-03	ci right 7.123373e-03	k: 455	n:70000
KS ci ratio: 3.149981e-02	ci left: 1.782959e-01	ci right 1.840163e-01	k: 12680	n:70000
MAGEE2   70000 perm   16 sec   (4368 perm/sec)   p_kst 1.811429e-01   p_cons 6.500000e-03   p_joint 1.775714e-02

Joint ci ratio: 1.046853e-01	ci left: 1.632252e-02	ci right 1.813773e-02	k: 1377	n:80000
Cons ci ratio: 1.718424e-01	ci left: 5.906984e-03	ci right 7.029259e-03	k: 516	n:80000
KS ci ratio: 2.945120e-02	ci left: 1.786232e-01	ci right 1.839749e-01	k: 14503	n:80000
MAGEE2   80000 perm   19 sec   (4295 perm/sec)   p_kst 1.812875e-01   p_cons 6.450000e-03   p_joint 1.721250e-02

Joint ci ratio: 1.056075e-01	ci left: 1.428091e-02	ci right 1.588390e-02	k: 1356	n:90000
Cons ci ratio: 1.611282e-01	ci left: 6.006721e-03	ci right 7.069904e-03	k: 587	n:90000
KS ci ratio: 2.776687e-02	ci left: 1.787767e-01	ci right 1.838217e-01	k: 16316	n:90000
MAGEE2   90000 perm   21 sec   (4223 perm/sec)   p_kst 1.812889e-01   p_cons 6.522222e-03   p_joint 1.506667e-02

Joint ci ratio: 1.053348e-01	ci left: 1.293997e-02	ci right 1.438845e-02	k: 1365	n:100000
Cons ci ratio: 1.527813e-01	ci left: 6.040147e-03	ci right 7.048795e-03	k: 653	n:100000
KS ci ratio: 2.632247e-02	ci left: 1.791253e-01	ci right 1.839132e-01	k: 18151	n:100000
MAGEE2   100000 perm   24 sec   (4155 perm/sec)   p_kst 1.815100e-01   p_cons 6.530000e-03   p_joint 1.365000e-02

Joint ci ratio: 1.011381e-01	ci left: 1.279087e-02	ci right 1.416223e-02	k: 1481	n:110000
Cons ci ratio: 1.463279e-01	ci left: 6.007333e-03	ci right 6.964422e-03	k: 712	n:110000
KS ci ratio: 2.508998e-02	ci left: 1.793257e-01	ci right 1.838911e-01	k: 19976	n:110000
MAGEE2   110000 perm   27 sec   (4094 perm/sec)   p_kst 1.816000e-01   p_cons 6.472727e-03   p_joint 1.346364e-02

Joint ci ratio: 1.086383e-01	ci left: 1.014989e-02	ci right 1.132394e-02	k: 1287	n:120000
Cons ci ratio: 1.381296e-01	ci left: 6.205981e-03	ci right 7.134768e-03	k: 799	n:120000
KS ci ratio: 2.401785e-02	ci left: 1.794721e-01	ci right 1.838433e-01	k: 21798	n:120000
MAGEE2   120000 perm   30 sec   (4030 perm/sec)   p_kst 1.816500e-01   p_cons 6.658333e-03   p_joint 1.072500e-02

Joint ci ratio: 9.101245e-02	ci left: 1.342849e-02	ci right 1.471639e-02	k: 1828	n:130000
Cons ci ratio: 1.322252e-01	ci left: 6.271165e-03	ci right 7.166436e-03	k: 872	n:130000
KS ci ratio: 2.312443e-02	ci left: 1.789333e-01	ci right 1.831271e-01	k: 23533	n:130000
MAGEE2   130000 perm   33 sec   (3969 perm/sec)   p_kst 1.810231e-01   p_cons 6.707692e-03   p_joint 1.406154e-02

Joint ci ratio: 7.549705e-02	ci left: 1.817909e-02	ci right 1.961237e-02	k: 2644	n:140000
Cons ci ratio: 1.266148e-01	ci left: 6.369266e-03	ci right 7.237064e-03	k: 951	n:140000
KS ci ratio: 2.222616e-02	ci left: 1.797685e-01	ci right 1.838161e-01	k: 25450	n:140000
MAGEE2   140000 perm   36 sec   (3917 perm/sec)   p_kst 1.817857e-01   p_cons 6.792857e-03   p_joint 1.888571e-02

Joint ci ratio: 7.284451e-02	ci left: 1.824960e-02	ci right 1.963575e-02	k: 2840	n:150000
Cons ci ratio: 1.225637e-01	ci left: 6.358017e-03	ci right 7.194553e-03	k: 1015	n:150000
KS ci ratio: 2.224140e-02	ci left: 1.696486e-01	ci right 1.734708e-01	k: 25733	n:150000
MAGEE2   150000 perm   39 sec   (3866 perm/sec)   p_kst 1.715533e-01   p_cons 6.766667e-03   p_joint 1.893333e-02

Joint ci ratio: 7.205378e-02	ci left: 1.750765e-02	ci right 1.882239e-02	k: 2905	n:160000
Cons ci ratio: 1.187123e-01	ci left: 6.366757e-03	ci right 7.176271e-03	k: 1082	n:160000
KS ci ratio: 2.156103e-02	ci left: 1.693696e-01	ci right 1.730673e-01	k: 27394	n:160000
MAGEE2   160000 perm   42 sec   (3815 perm/sec)   p_kst 1.712125e-01   p_cons 6.762500e-03   p_joint 1.815625e-02

Joint ci ratio: 6.999052e-02	ci left: 1.748313e-02	ci right 1.875691e-02	k: 3079	n:170000
Cons ci ratio: 1.152025e-01	ci left: 6.374831e-03	ci right 7.159778e-03	k: 1149	n:170000
KS ci ratio: 2.090393e-02	ci left: 1.696054e-01	ci right 1.731941e-01	k: 29137	n:170000
MAGEE2   170000 perm   45 sec   (3765 perm/sec)   p_kst 1.713941e-01   p_cons 6.758824e-03   p_joint 1.811176e-02

Joint ci ratio: 7.427411e-02	ci left: 1.467256e-02	ci right 1.580980e-02	k: 2742	n:180000
Cons ci ratio: 1.121724e-01	ci left: 6.360719e-03	ci right 7.121965e-03	k: 1212	n:180000
KS ci ratio: 2.018952e-02	ci left: 1.714156e-01	ci right 1.749172e-01	k: 31169	n:180000
MAGEE2   180000 perm   48 sec   (3716 perm/sec)   p_kst 1.731611e-01   p_cons 6.733333e-03   p_joint 1.523333e-02

Joint ci ratio: 7.498687e-02	ci left: 1.364696e-02	ci right 1.471530e-02	k: 2693	n:190000
Cons ci ratio: 1.096293e-01	ci left: 6.317615e-03	ci right 7.055452e-03	k: 1269	n:190000
KS ci ratio: 1.965453e-02	ci left: 1.714117e-01	ci right 1.748193e-01	k: 32891	n:190000
MAGEE2   190000 perm   52 sec   (3669 perm/sec)   p_kst 1.731105e-01   p_cons 6.678947e-03   p_joint 1.417368e-02

Joint ci ratio: 7.104213e-02	ci left: 1.446200e-02	ci right 1.553213e-02	k: 2998	n:200000
Cons ci ratio: 1.069680e-01	ci left: 6.313065e-03	ci right 7.031346e-03	k: 1333	n:200000
KS ci ratio: 1.913954e-02	ci left: 1.717131e-01	ci right 1.750363e-01	k: 34674	n:200000
MAGEE2   200000 perm   55 sec   (3622 perm/sec)   p_kst 1.733700e-01   p_cons 6.665000e-03   p_joint 1.499000e-02

Joint ci ratio: 7.078111e-02	ci left: 1.388544e-02	ci right 1.490898e-02	k: 3022	n:210000
Cons ci ratio: 1.043039e-01	ci left: 6.332337e-03	ci right 7.033765e-03	k: 1402	n:210000
KS ci ratio: 1.865311e-02	ci left: 1.721387e-01	ci right 1.753846e-01	k: 36489	n:210000
MAGEE2   210000 perm   59 sec   (3577 perm/sec)   p_kst 1.737571e-01   p_cons 6.676190e-03   p_joint 1.439048e-02

Joint ci ratio: 6.936464e-02	ci left: 1.381249e-02	ci right 1.480946e-02	k: 3147	n:220000
Cons ci ratio: 1.020390e-01	ci left: 6.323476e-03	ci right 7.007801e-03	k: 1465	n:220000
KS ci ratio: 1.821462e-02	ci left: 1.723273e-01	ci right 1.754995e-01	k: 38260	n:220000
MAGEE2   220000 perm   62 sec   (3531 perm/sec)   p_kst 1.739091e-01   p_cons 6.659091e-03   p_joint 1.430455e-02

Joint ci ratio: 7.131774e-02	ci left: 1.250260e-02	ci right 1.343147e-02	k: 2981	n:230000
Cons ci ratio: 9.998138e-02	ci left: 6.307057e-03	ci right 6.975033e-03	k: 1526	n:230000
KS ci ratio: 1.779598e-02	ci left: 1.726562e-01	ci right 1.757607e-01	k: 40067	n:230000
MAGEE2   230000 perm   66 sec   (3487 perm/sec)   p_kst 1.742043e-01   p_cons 6.634783e-03   p_joint 1.296087e-02

Outputting figure to mutsig2_images.part000000000101/MAGEE2.9_1576_230000_0.1742_0.0066348_0.012961.png
                gene_name: MAGEE2
               theta_stop: 0.100 
                    nperm: 230000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0063 
     ci_cons_bounds_right: 0.0070 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.013 

Current progress: 21 percent done.
MAN1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420320e-02	ci left: 8.775616e-01	ci right 8.902138e-01	k: 8840	n:10000
Cons ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
MAN1A2   10000 perm   2 sec   (5166 perm/sec)   p_kst 9.719000e-01   p_cons 3.925000e-01   p_joint 8.840000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1A2.9_1978_10000_0.9719_0.3925_0.884.png
                gene_name: MAN1A2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 22 percent done.
MAMLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 2.087943e-02	ci left: 7.707371e-01	ci right 7.871001e-01	k: 7790	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
MAMLD1   10000 perm   2 sec   (5008 perm/sec)   p_kst 2.100000e-03   p_cons 7.790000e-01   p_joint 9.500000e-03

Joint ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
Cons ci ratio: 1.400663e-02	ci left: 7.909534e-01	ci right 8.021602e-01	k: 15932	n:20000
KS ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
MAMLD1   20000 perm   4 sec   (4498 perm/sec)   p_kst 2.400000e-03   p_cons 7.966000e-01   p_joint 1.845000e-02

Joint ci ratio: 1.908535e-01	ci left: 1.254223e-02	ci right 1.521980e-02	k: 415	n:30000
Cons ci ratio: 1.141748e-02	ci left: 7.925375e-01	ci right 8.016716e-01	k: 23914	n:30000
KS ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
MAMLD1   30000 perm   7 sec   (4321 perm/sec)   p_kst 2.366667e-03   p_cons 7.971333e-01   p_joint 1.383333e-02

Joint ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
Cons ci ratio: 1.013131e-02	ci left: 7.851191e-01	ci right 7.931389e-01	k: 31566	n:40000
KS ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
MAMLD1   40000 perm   10 sec   (4205 perm/sec)   p_kst 2.325000e-03   p_cons 7.891500e-01   p_joint 9.800000e-03

Joint ci ratio: 1.886658e-01	ci left: 7.752087e-03	ci right 9.385738e-03	k: 427	n:50000
Cons ci ratio: 9.086482e-03	ci left: 7.846322e-01	ci right 7.918143e-01	k: 39412	n:50000
KS ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
MAMLD1   50000 perm   12 sec   (4114 perm/sec)   p_kst 2.440000e-03   p_cons 7.882400e-01   p_joint 8.540000e-03

Joint ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
Cons ci ratio: 8.319784e-03	ci left: 7.839364e-01	ci right 7.905024e-01	k: 47234	n:60000
KS ci ratio: 3.285669e-01	ci left: 1.978482e-03	ci right 2.770881e-03	k: 141	n:60000
MAMLD1   60000 perm   15 sec   (4048 perm/sec)   p_kst 2.350000e-03   p_cons 7.872333e-01   p_joint 1.251667e-02

Joint ci ratio: 1.524477e-01	ci left: 8.643420e-03	ci right 1.008340e-02	k: 654	n:70000
Cons ci ratio: 7.677760e-03	ci left: 7.852690e-01	ci right 7.913356e-01	k: 55182	n:70000
KS ci ratio: 2.918016e-01	ci left: 2.196625e-03	ci right 2.959826e-03	k: 179	n:70000
MAMLD1   70000 perm   18 sec   (3990 perm/sec)   p_kst 2.557143e-03   p_cons 7.883143e-01   p_joint 9.342857e-03

Joint ci ratio: 1.451252e-01	ci left: 8.381276e-03	ci right 9.704696e-03	k: 722	n:80000
Cons ci ratio: 7.165781e-03	ci left: 7.862187e-01	ci right 7.918853e-01	k: 63125	n:80000
KS ci ratio: 2.707960e-01	ci left: 2.259018e-03	ci right 2.977809e-03	k: 208	n:80000
MAMLD1   80000 perm   20 sec   (3929 perm/sec)   p_kst 2.600000e-03   p_cons 7.890625e-01   p_joint 9.025000e-03

Joint ci ratio: 1.435076e-01	ci left: 7.631877e-03	ci right 8.822369e-03	k: 739	n:90000
Cons ci ratio: 6.748886e-03	ci left: 7.867325e-01	ci right 7.920711e-01	k: 71047	n:90000
KS ci ratio: 2.615884e-01	ci left: 2.163549e-03	ci right 2.824725e-03	k: 223	n:90000
MAMLD1   90000 perm   23 sec   (3873 perm/sec)   p_kst 2.477778e-03   p_cons 7.894111e-01   p_joint 8.211111e-03

Joint ci ratio: 1.423132e-01	ci left: 6.993874e-03	ci right 8.074984e-03	k: 752	n:100000
Cons ci ratio: 6.415667e-03	ci left: 7.861866e-01	ci right 7.912567e-01	k: 78873	n:100000
KS ci ratio: 2.491142e-01	ci left: 2.162481e-03	ci right 2.786935e-03	k: 246	n:100000
MAMLD1   100000 perm   26 sec   (3818 perm/sec)   p_kst 2.460000e-03   p_cons 7.887300e-01   p_joint 7.520000e-03

Joint ci ratio: 1.447026e-01	ci left: 6.147523e-03	ci right 7.115129e-03	k: 728	n:110000
Cons ci ratio: 6.108303e-03	ci left: 7.867866e-01	ci right 7.916163e-01	k: 86813	n:110000
KS ci ratio: 2.369535e-01	ci left: 2.187873e-03	ci right 2.784296e-03	k: 272	n:110000
MAMLD1   110000 perm   29 sec   (3767 perm/sec)   p_kst 2.472727e-03   p_cons 7.892091e-01   p_joint 6.618182e-03

Joint ci ratio: 1.250936e-01	ci left: 7.608676e-03	ci right 8.631976e-03	k: 973	n:120000
Cons ci ratio: 5.843433e-03	ci left: 7.871656e-01	ci right 7.917871e-01	k: 94738	n:120000
KS ci ratio: 2.219937e-01	ci left: 2.304046e-03	ci right 2.887073e-03	k: 310	n:120000
MAMLD1   120000 perm   32 sec   (3715 perm/sec)   p_kst 2.583333e-03   p_cons 7.894833e-01   p_joint 8.108333e-03

Joint ci ratio: 1.260490e-01	ci left: 6.918928e-03	ci right 7.857093e-03	k: 959	n:130000
Cons ci ratio: 5.616635e-03	ci left: 7.871115e-01	ci right 7.915525e-01	k: 102614	n:130000
KS ci ratio: 2.142163e-01	ci left: 2.294071e-03	ci right 2.851564e-03	k: 333	n:130000
MAMLD1   130000 perm   36 sec   (3657 perm/sec)   p_kst 2.561538e-03   p_cons 7.893385e-01   p_joint 7.376923e-03

Joint ci ratio: 1.016332e-01	ci left: 9.979616e-03	ci right 1.105509e-02	k: 1471	n:140000
Cons ci ratio: 5.406207e-03	ci left: 7.875701e-01	ci right 7.918465e-01	k: 110560	n:140000
KS ci ratio: 2.054790e-01	ci left: 2.326473e-03	ci right 2.865885e-03	k: 362	n:140000
MAMLD1   140000 perm   39 sec   (3598 perm/sec)   p_kst 2.585714e-03   p_cons 7.897143e-01   p_joint 1.050714e-02

Joint ci ratio: 1.020550e-01	ci left: 9.242662e-03	ci right 1.024309e-02	k: 1460	n:150000
Cons ci ratio: 5.220600e-03	ci left: 7.877893e-01	ci right 7.919194e-01	k: 118479	n:150000
KS ci ratio: 1.982380e-01	ci left: 2.342281e-03	ci right 2.863908e-03	k: 389	n:150000
MAMLD1   150000 perm   42 sec   (3542 perm/sec)   p_kst 2.593333e-03   p_cons 7.898600e-01   p_joint 9.733333e-03

Joint ci ratio: 1.014921e-01	ci left: 8.768432e-03	ci right 9.711980e-03	k: 1477	n:160000
Cons ci ratio: 5.054881e-03	ci left: 7.878516e-01	ci right 7.918504e-01	k: 126377	n:160000
KS ci ratio: 1.912530e-01	ci left: 2.368306e-03	ci right 2.874985e-03	k: 418	n:160000
MAMLD1   160000 perm   46 sec   (3490 perm/sec)   p_kst 2.612500e-03   p_cons 7.898563e-01   p_joint 9.231250e-03

Joint ci ratio: 9.822143e-02	ci left: 8.826200e-03	ci right 9.743593e-03	k: 1577	n:170000
Cons ci ratio: 4.901310e-03	ci left: 7.880913e-01	ci right 7.919693e-01	k: 134306	n:170000
KS ci ratio: 1.853732e-01	ci left: 2.380333e-03	ci right 2.872168e-03	k: 445	n:170000
MAMLD1   170000 perm   49 sec   (3440 perm/sec)   p_kst 2.617647e-03   p_cons 7.900353e-01   p_joint 9.276471e-03

Joint ci ratio: 9.799671e-02	ci left: 8.379115e-03	ci right 9.247927e-03	k: 1585	n:180000
Cons ci ratio: 4.755507e-03	ci left: 7.886850e-01	ci right 7.924501e-01	k: 142303	n:180000
KS ci ratio: 1.815502e-01	ci left: 2.348797e-03	ci right 2.823005e-03	k: 464	n:180000
MAMLD1   180000 perm   53 sec   (3392 perm/sec)   p_kst 2.577778e-03   p_cons 7.905722e-01   p_joint 8.805556e-03

Joint ci ratio: 9.518562e-02	ci left: 8.426040e-03	ci right 9.273258e-03	k: 1680	n:190000
Cons ci ratio: 4.627178e-03	ci left: 7.888426e-01	ci right 7.925064e-01	k: 150229	n:190000
KS ci ratio: 1.754286e-01	ci left: 2.391106e-03	ci right 2.855855e-03	k: 497	n:190000
MAMLD1   190000 perm   57 sec   (3346 perm/sec)   p_kst 2.615789e-03   p_cons 7.906789e-01   p_joint 8.842105e-03

Joint ci ratio: 1.028204e-01	ci left: 6.843865e-03	ci right 7.590525e-03	k: 1442	n:200000
Cons ci ratio: 4.510273e-03	ci left: 7.888703e-01	ci right 7.924413e-01	k: 158132	n:200000
KS ci ratio: 1.757944e-01	ci left: 2.261977e-03	ci right 2.702641e-03	k: 495	n:200000
MAMLD1   200000 perm   61 sec   (3301 perm/sec)   p_kst 2.475000e-03   p_cons 7.906600e-01   p_joint 7.210000e-03

Joint ci ratio: 1.009873e-01	ci left: 6.763901e-03	ci right 7.487899e-03	k: 1495	n:210000
Cons ci ratio: 4.398701e-03	ci left: 7.891304e-01	ci right 7.926139e-01	k: 166084	n:210000
KS ci ratio: 1.721886e-01	ci left: 2.249908e-03	ci right 2.678296e-03	k: 516	n:210000
MAMLD1   210000 perm   64 sec   (3260 perm/sec)   p_kst 2.457143e-03   p_cons 7.908762e-01   p_joint 7.119048e-03

Joint ci ratio: 1.023558e-01	ci left: 6.283606e-03	ci right 6.965854e-03	k: 1456	n:220000
Cons ci ratio: 4.295250e-03	ci left: 7.893496e-01	ci right 7.927518e-01	k: 174032	n:220000
KS ci ratio: 1.684824e-01	ci left: 2.247728e-03	ci right 2.665553e-03	k: 539	n:220000
MAMLD1   220000 perm   69 sec   (3196 perm/sec)   p_kst 2.450000e-03   p_cons 7.910545e-01   p_joint 6.618182e-03

Joint ci ratio: 9.975148e-02	ci left: 6.336736e-03	ci right 7.006222e-03	k: 1533	n:230000
Cons ci ratio: 4.201310e-03	ci left: 7.893499e-01	ci right 7.926775e-01	k: 181934	n:230000
KS ci ratio: 1.638428e-01	ci left: 2.279182e-03	ci right 2.690038e-03	k: 570	n:230000
MAMLD1   230000 perm   73 sec   (3157 perm/sec)   p_kst 2.478261e-03   p_cons 7.910174e-01   p_joint 6.665217e-03

Joint ci ratio: 1.019626e-01	ci left: 5.808622e-03	ci right 6.436728e-03	k: 1468	n:240000
Cons ci ratio: 4.113845e-03	ci left: 7.893050e-01	ci right 7.925629e-01	k: 189825	n:240000
KS ci ratio: 1.595664e-01	ci left: 2.308159e-03	ci right 2.712338e-03	k: 601	n:240000
MAMLD1   240000 perm   77 sec   (3122 perm/sec)   p_kst 2.504167e-03   p_cons 7.909375e-01   p_joint 6.116667e-03

Joint ci ratio: 1.019752e-01	ci left: 5.576243e-03	ci right 6.179299e-03	k: 1468	n:250000
Cons ci ratio: 4.027138e-03	ci left: 7.896335e-01	ci right 7.928238e-01	k: 197808	n:250000
KS ci ratio: 1.566036e-01	ci left: 2.304193e-03	ci right 2.699482e-03	k: 624	n:250000
MAMLD1   250000 perm   81 sec   (3086 perm/sec)   p_kst 2.496000e-03   p_cons 7.912320e-01   p_joint 5.872000e-03

Joint ci ratio: 1.009214e-01	ci left: 5.477964e-03	ci right 6.063905e-03	k: 1499	n:260000
Cons ci ratio: 3.838799e-03	ci left: 7.988815e-01	ci right 8.019579e-01	k: 208110	n:260000
KS ci ratio: 1.541580e-01	ci left: 2.289501e-03	ci right 2.675569e-03	k: 644	n:260000
MAMLD1   260000 perm   85 sec   (3050 perm/sec)   p_kst 2.476923e-03   p_cons 8.004231e-01   p_joint 5.765385e-03

Joint ci ratio: 9.886557e-02	ci left: 5.502583e-03	ci right 6.078473e-03	k: 1562	n:270000
Cons ci ratio: 3.766613e-03	ci left: 7.989467e-01	ci right 8.019654e-01	k: 216124	n:270000
KS ci ratio: 1.500249e-01	ci left: 2.332968e-03	ci right 2.714872e-03	k: 680	n:270000
MAMLD1   270000 perm   90 sec   (3016 perm/sec)   p_kst 2.518519e-03   p_cons 8.004593e-01   p_joint 5.785185e-03

Joint ci ratio: 9.809006e-02	ci left: 5.393134e-03	ci right 5.952886e-03	k: 1587	n:280000
Cons ci ratio: 3.696449e-03	ci left: 7.991725e-01	ci right 8.021356e-01	k: 224184	n:280000
KS ci ratio: 1.469281e-01	ci left: 2.349373e-03	ci right 2.725327e-03	k: 709	n:280000
MAMLD1   280000 perm   94 sec   (2984 perm/sec)   p_kst 2.532143e-03   p_cons 8.006571e-01   p_joint 5.667857e-03

Joint ci ratio: 8.486539e-02	ci left: 6.993380e-03	ci right 7.616527e-03	k: 2117	n:290000
Cons ci ratio: 3.633946e-03	ci left: 7.990408e-01	ci right 8.019532e-01	k: 232145	n:290000
KS ci ratio: 1.443094e-01	ci left: 2.354749e-03	ci right 2.724269e-03	k: 735	n:290000
MAMLD1   290000 perm   98 sec   (2953 perm/sec)   p_kst 2.534483e-03   p_cons 8.005000e-01   p_joint 7.300000e-03

Joint ci ratio: 8.709839e-02	ci left: 6.414447e-03	ci right 7.001810e-03	k: 2011	n:300000
Cons ci ratio: 3.573612e-03	ci left: 7.989986e-01	ci right 8.018623e-01	k: 240130	n:300000
KS ci ratio: 1.412694e-01	ci left: 2.379116e-03	ci right 2.743932e-03	k: 767	n:300000
MAMLD1   300000 perm   103 sec   (2922 perm/sec)   p_kst 2.556667e-03   p_cons 8.004333e-01   p_joint 6.703333e-03

Joint ci ratio: 8.587077e-02	ci left: 6.390576e-03	ci right 6.967092e-03	k: 2069	n:310000
Cons ci ratio: 3.512673e-03	ci left: 7.992796e-01	ci right 8.020954e-01	k: 248214	n:310000
KS ci ratio: 1.392893e-01	ci left: 2.370847e-03	ci right 2.728876e-03	k: 789	n:310000
MAMLD1   310000 perm   107 sec   (2892 perm/sec)   p_kst 2.545161e-03   p_cons 8.006903e-01   p_joint 6.674194e-03

Joint ci ratio: 8.477387e-02	ci left: 6.356015e-03	ci right 6.921725e-03	k: 2123	n:320000
Cons ci ratio: 3.457314e-03	ci left: 7.993054e-01	ci right 8.020767e-01	k: 256222	n:320000
KS ci ratio: 1.371364e-01	ci left: 2.372181e-03	ci right 2.724424e-03	k: 814	n:320000
MAMLD1   320000 perm   112 sec   (2862 perm/sec)   p_kst 2.543750e-03   p_cons 8.006937e-01   p_joint 6.634375e-03

Joint ci ratio: 8.514634e-02	ci left: 6.109989e-03	ci right 6.656309e-03	k: 2105	n:330000
Cons ci ratio: 3.406756e-03	ci left: 7.991172e-01	ci right 8.018472e-01	k: 264160	n:330000
KS ci ratio: 1.351611e-01	ci left: 2.370547e-03	ci right 2.717069e-03	k: 838	n:330000
MAMLD1   330000 perm   116 sec   (2833 perm/sec)   p_kst 2.539394e-03   p_cons 8.004848e-01   p_joint 6.378788e-03

Joint ci ratio: 7.661261e-02	ci left: 7.348323e-03	ci right 7.936586e-03	k: 2597	n:340000
Cons ci ratio: 3.356247e-03	ci left: 7.991409e-01	ci right 8.018304e-01	k: 272166	n:340000
KS ci ratio: 1.354091e-01	ci left: 2.292294e-03	ci right 2.628041e-03	k: 835	n:340000
MAMLD1   340000 perm   121 sec   (2805 perm/sec)   p_kst 2.455882e-03   p_cons 8.004882e-01   p_joint 7.638235e-03

Joint ci ratio: 7.662104e-02	ci left: 7.138341e-03	ci right 7.709860e-03	k: 2597	n:350000
Cons ci ratio: 3.307772e-03	ci left: 7.991779e-01	ci right 8.018286e-01	k: 280177	n:350000
KS ci ratio: 1.328115e-01	ci left: 2.317924e-03	ci right 2.650398e-03	k: 868	n:350000
MAMLD1   350000 perm   126 sec   (2779 perm/sec)   p_kst 2.480000e-03   p_cons 8.005057e-01   p_joint 7.420000e-03

Joint ci ratio: 7.548150e-02	ci left: 7.155327e-03	ci right 7.719312e-03	k: 2676	n:360000
Cons ci ratio: 3.262813e-03	ci left: 7.990683e-01	ci right 8.016825e-01	k: 288136	n:360000
KS ci ratio: 1.296395e-01	ci left: 2.369065e-03	ci right 2.700134e-03	k: 911	n:360000
MAMLD1   360000 perm   131 sec   (2752 perm/sec)   p_kst 2.530556e-03   p_cons 8.003778e-01   p_joint 7.433333e-03

Joint ci ratio: 7.666625e-02	ci left: 6.747131e-03	ci right 7.287660e-03	k: 2595	n:370000
Cons ci ratio: 3.218685e-03	ci left: 7.990596e-01	ci right 8.016384e-01	k: 296130	n:370000
KS ci ratio: 1.279669e-01	ci left: 2.367811e-03	ci right 2.694112e-03	k: 935	n:370000
MAMLD1   370000 perm   136 sec   (2724 perm/sec)   p_kst 2.527027e-03   p_cons 8.003514e-01   p_joint 7.013514e-03

Joint ci ratio: 7.646605e-02	ci left: 6.605693e-03	ci right 7.133447e-03	k: 2609	n:380000
Cons ci ratio: 3.176274e-03	ci left: 7.990543e-01	ci right 8.015990e-01	k: 304125	n:380000
KS ci ratio: 1.262915e-01	ci left: 2.369197e-03	ci right 2.691095e-03	k: 960	n:380000
MAMLD1   380000 perm   141 sec   (2697 perm/sec)   p_kst 2.526316e-03   p_cons 8.003289e-01   p_joint 6.865789e-03

Joint ci ratio: 7.553167e-02	ci left: 6.599815e-03	ci right 7.120373e-03	k: 2674	n:390000
Cons ci ratio: 3.135472e-03	ci left: 7.990521e-01	ci right 8.015640e-01	k: 312121	n:390000
KS ci ratio: 1.243644e-01	ci left: 2.382961e-03	ci right 2.701425e-03	k: 990	n:390000
MAMLD1   390000 perm   146 sec   (2671 perm/sec)   p_kst 2.538462e-03   p_cons 8.003103e-01   p_joint 6.856410e-03

Joint ci ratio: 7.565216e-02	ci left: 6.415175e-03	ci right 6.922011e-03	k: 2666	n:400000
Cons ci ratio: 3.095718e-03	ci left: 7.991003e-01	ci right 8.015804e-01	k: 320137	n:400000
KS ci ratio: 1.228249e-01	ci left: 2.383955e-03	ci right 2.698320e-03	k: 1015	n:400000
MAMLD1   400000 perm   151 sec   (2644 perm/sec)   p_kst 2.537500e-03   p_cons 8.003425e-01   p_joint 6.665000e-03

Joint ci ratio: 6.720764e-02	ci left: 7.952600e-03	ci right 8.508042e-03	k: 3373	n:410000
Cons ci ratio: 3.147570e-03	ci left: 7.896788e-01	ci right 7.921707e-01	k: 324280	n:410000
KS ci ratio: 1.215168e-01	ci left: 2.377828e-03	ci right 2.687806e-03	k: 1037	n:410000
MAMLD1   410000 perm   157 sec   (2619 perm/sec)   p_kst 2.529268e-03   p_cons 7.909268e-01   p_joint 8.226829e-03

Joint ci ratio: 6.684577e-02	ci left: 7.849857e-03	ci right 8.395057e-03	k: 3410	n:420000
Cons ci ratio: 3.109611e-03	ci left: 7.897218e-01	ci right 7.921837e-01	k: 332201	n:420000
KS ci ratio: 1.204206e-01	ci left: 2.365081e-03	ci right 2.670418e-03	k: 1056	n:420000
MAMLD1   420000 perm   162 sec   (2593 perm/sec)   p_kst 2.514286e-03   p_cons 7.909548e-01   p_joint 8.119048e-03

Joint ci ratio: 7.072776e-02	ci left: 6.842069e-03	ci right 7.346003e-03	k: 3049	n:430000
Cons ci ratio: 3.074786e-03	ci left: 7.895695e-01	ci right 7.920033e-01	k: 340039	n:430000
KS ci ratio: 1.187466e-01	ci left: 2.377761e-03	ci right 2.680167e-03	k: 1086	n:430000
MAMLD1   430000 perm   167 sec   (2568 perm/sec)   p_kst 2.525581e-03   p_cons 7.907884e-01   p_joint 7.090698e-03

Joint ci ratio: 7.037426e-02	ci left: 6.755768e-03	ci right 7.250757e-03	k: 3080	n:440000
Cons ci ratio: 3.039391e-03	ci left: 7.896111e-01	ci right 7.920169e-01	k: 347959	n:440000
KS ci ratio: 1.170880e-01	ci left: 2.392098e-03	ci right 2.691785e-03	k: 1117	n:440000
MAMLD1   440000 perm   173 sec   (2544 perm/sec)   p_kst 2.538636e-03   p_cons 7.908159e-01   p_joint 7.000000e-03

Joint ci ratio: 6.962157e-02	ci left: 6.751922e-03	ci right 7.241124e-03	k: 3147	n:450000
Cons ci ratio: 3.006726e-03	ci left: 7.894817e-01	ci right 7.918612e-01	k: 355803	n:450000
KS ci ratio: 1.156990e-01	ci left: 2.397194e-03	ci right 2.693713e-03	k: 1144	n:450000
MAMLD1   450000 perm   179 sec   (2518 perm/sec)   p_kst 2.542222e-03   p_cons 7.906733e-01   p_joint 6.993333e-03

Joint ci ratio: 6.906581e-02	ci left: 6.714084e-03	ci right 7.196505e-03	k: 3198	n:460000
Cons ci ratio: 2.974093e-03	ci left: 7.894692e-01	ci right 7.918228e-01	k: 363698	n:460000
KS ci ratio: 1.146037e-01	ci left: 2.391529e-03	ci right 2.684358e-03	k: 1166	n:460000
MAMLD1   460000 perm   185 sec   (2493 perm/sec)   p_kst 2.534783e-03   p_cons 7.906478e-01   p_joint 6.952174e-03

Joint ci ratio: 6.877931e-02	ci left: 6.627678e-03	ci right 7.101836e-03	k: 3225	n:470000
Cons ci ratio: 2.941820e-03	ci left: 7.895341e-01	ci right 7.918623e-01	k: 371629	n:470000
KS ci ratio: 1.127338e-01	ci left: 2.421267e-03	ci right 2.712578e-03	k: 1205	n:470000
MAMLD1   470000 perm   190 sec   (2467 perm/sec)   p_kst 2.563830e-03   p_cons 7.907000e-01   p_joint 6.861702e-03

Joint ci ratio: 6.880574e-02	ci left: 6.485490e-03	ci right 6.949661e-03	k: 3223	n:480000
Cons ci ratio: 2.911106e-03	ci left: 7.895359e-01	ci right 7.918397e-01	k: 379531	n:480000
KS ci ratio: 1.119027e-01	ci left: 2.407270e-03	ci right 2.694621e-03	k: 1223	n:480000
MAMLD1   480000 perm   197 sec   (2443 perm/sec)   p_kst 2.547917e-03   p_cons 7.906896e-01   p_joint 6.714583e-03

Joint ci ratio: 6.802896e-02	ci left: 6.501572e-03	ci right 6.961433e-03	k: 3297	n:490000
Cons ci ratio: 2.881104e-03	ci left: 7.895644e-01	ci right 7.918445e-01	k: 387446	n:490000
KS ci ratio: 1.105997e-01	ci left: 2.415679e-03	ci right 2.700457e-03	k: 1252	n:490000
MAMLD1   490000 perm   203 sec   (2419 perm/sec)   p_kst 2.555102e-03   p_cons 7.907061e-01   p_joint 6.728571e-03

Joint ci ratio: 6.776520e-02	ci left: 6.422648e-03	ci right 6.875097e-03	k: 3323	n:500000
Cons ci ratio: 2.851321e-03	ci left: 7.896719e-01	ci right 7.919287e-01	k: 395401	n:500000
KS ci ratio: 1.096849e-01	ci left: 2.408208e-03	ci right 2.689606e-03	k: 1273	n:500000
MAMLD1   500000 perm   209 sec   (2396 perm/sec)   p_kst 2.546000e-03   p_cons 7.908020e-01   p_joint 6.646000e-03

Joint ci ratio: 6.505679e-02	ci left: 6.838594e-03	ci right 7.300365e-03	k: 3604	n:510000
Cons ci ratio: 2.823447e-03	ci left: 7.896575e-01	ci right 7.918921e-01	k: 403296	n:510000
KS ci ratio: 1.085406e-01	ci left: 2.412485e-03	ci right 2.691253e-03	k: 1300	n:510000
MAMLD1   510000 perm   215 sec   (2373 perm/sec)   p_kst 2.549020e-03   p_cons 7.907765e-01   p_joint 7.066667e-03

Joint ci ratio: 6.440780e-02	ci left: 6.845196e-03	ci right 7.302630e-03	k: 3677	n:520000
Cons ci ratio: 2.795886e-03	ci left: 7.897015e-01	ci right 7.919144e-01	k: 411221	n:520000
KS ci ratio: 1.069881e-01	ci left: 2.437200e-03	ci right 2.714542e-03	k: 1338	n:520000
MAMLD1   520000 perm   221 sec   (2351 perm/sec)   p_kst 2.573077e-03   p_cons 7.908096e-01   p_joint 7.071154e-03

Joint ci ratio: 6.376073e-02	ci left: 6.855284e-03	ci right 7.308620e-03	k: 3752	n:530000
Cons ci ratio: 2.770365e-03	ci left: 7.895947e-01	ci right 7.917870e-01	k: 419067	n:530000
KS ci ratio: 1.053853e-01	ci left: 2.466521e-03	ci right 2.742735e-03	k: 1379	n:530000
MAMLD1   530000 perm   228 sec   (2329 perm/sec)   p_kst 2.601887e-03   p_cons 7.906925e-01   p_joint 7.079245e-03

Joint ci ratio: 6.418826e-02	ci left: 6.639022e-03	ci right 7.081109e-03	k: 3703	n:540000
Cons ci ratio: 2.744485e-03	ci left: 7.896181e-01	ci right 7.917899e-01	k: 426981	n:540000
KS ci ratio: 1.044436e-01	ci left: 2.465926e-03	ci right 2.739454e-03	k: 1404	n:540000
MAMLD1   540000 perm   234 sec   (2306 perm/sec)   p_kst 2.600000e-03   p_cons 7.907056e-01   p_joint 6.857407e-03

Joint ci ratio: 6.415742e-02	ci left: 6.525456e-03	ci right 6.959764e-03	k: 3707	n:550000
Cons ci ratio: 2.720258e-03	ci left: 7.895259e-01	ci right 7.916783e-01	k: 434832	n:550000
KS ci ratio: 1.034904e-01	ci left: 2.467135e-03	ci right 2.738147e-03	k: 1430	n:550000
MAMLD1   550000 perm   241 sec   (2285 perm/sec)   p_kst 2.600000e-03   p_cons 7.906036e-01   p_joint 6.740000e-03

Joint ci ratio: 6.443300e-02	ci left: 6.354445e-03	ci right 6.779255e-03	k: 3676	n:560000
Cons ci ratio: 2.696181e-03	ci left: 7.894962e-01	ci right 7.916294e-01	k: 442716	n:560000
KS ci ratio: 1.025629e-01	ci left: 2.468311e-03	ci right 2.736876e-03	k: 1456	n:560000
MAMLD1   560000 perm   247 sec   (2266 perm/sec)   p_kst 2.600000e-03   p_cons 7.905643e-01   p_joint 6.564286e-03

Joint ci ratio: 6.390537e-02	ci left: 6.348263e-03	ci right 6.769056e-03	k: 3737	n:570000
Cons ci ratio: 2.671854e-03	ci left: 7.895765e-01	ci right 7.916907e-01	k: 450662	n:570000
KS ci ratio: 1.017631e-01	ci left: 2.464327e-03	ci right 2.730243e-03	k: 1479	n:570000
MAMLD1   570000 perm   254 sec   (2246 perm/sec)   p_kst 2.594737e-03   p_cons 7.906351e-01   p_joint 6.556140e-03

Joint ci ratio: 6.390900e-02	ci left: 6.238799e-03	ci right 6.652361e-03	k: 3737	n:580000
Cons ci ratio: 2.648312e-03	ci left: 7.896369e-01	ci right 7.917326e-01	k: 458598	n:580000
KS ci ratio: 1.011167e-01	ci left: 2.453765e-03	ci right 2.716760e-03	k: 1498	n:580000
MAMLD1   580000 perm   261 sec   (2226 perm/sec)   p_kst 2.582759e-03   p_cons 7.906862e-01   p_joint 6.443103e-03

Joint ci ratio: 6.209922e-02	ci left: 6.500091e-03	ci right 6.918334e-03	k: 3957	n:590000
Cons ci ratio: 2.626443e-03	ci left: 7.895612e-01	ci right 7.916393e-01	k: 466455	n:590000
KS ci ratio: 1.005822e-01	ci left: 2.438610e-03	ci right 2.698517e-03	k: 1514	n:590000
MAMLD1   590000 perm   267 sec   (2207 perm/sec)   p_kst 2.566102e-03   p_cons 7.906017e-01   p_joint 6.706780e-03

Joint ci ratio: 6.361690e-02	ci left: 6.088228e-03	ci right 6.489895e-03	k: 3772	n:600000
Cons ci ratio: 2.604399e-03	ci left: 7.895783e-01	ci right 7.916389e-01	k: 474366	n:600000
KS ci ratio: 9.976249e-02	ci left: 2.438589e-03	ci right 2.696251e-03	k: 1539	n:600000
MAMLD1   600000 perm   274 sec   (2189 perm/sec)   p_kst 2.565000e-03   p_cons 7.906100e-01   p_joint 6.286667e-03

Outputting figure to mutsig2_images.part000000000101/MAMLD1.8_3467_600000_0.002565_0.79061_0.0062867.png
                gene_name: MAMLD1
               theta_stop: 0.100 
                    nperm: 600000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0024 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0065 

Current progress: 24 percent done.
MAP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
MAP1A   10000 perm   4 sec   (2663 perm/sec)   p_kst 1.170000e-01   p_cons 6.913000e-01   p_joint 2.128000e-01

Joint ci ratio: 4.690870e-02	ci left: 2.526909e-01	ci right 2.648793e-01	k: 5175	n:20000
Cons ci ratio: 1.798157e-02	ci left: 6.974179e-01	ci right 7.101228e-01	k: 14076	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
MAP1A   20000 perm   8 sec   (2403 perm/sec)   p_kst 1.220500e-01   p_cons 7.038000e-01   p_joint 2.587500e-01

Outputting figure to mutsig2_images.part000000000101/MAP1A.8_8424_20000_0.12205_0.7038_0.25875.png
                gene_name: MAP1A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 25 percent done.
MAGEA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
KS ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
MAGEA10   10000 perm   2 sec   (6214 perm/sec)   p_kst 9.722000e-01   p_cons 8.530000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEA10.7_1114_10000_0.9722_0.853_1.png
                gene_name: MAGEA10
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
MAML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
MAML3   10000 perm   2 sec   (4320 perm/sec)   p_kst 2.910000e-02   p_cons 6.690000e-01   p_joint 1.131000e-01

Joint ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
Cons ci ratio: 1.946347e-02	ci left: 6.631827e-01	ci right 6.762679e-01	k: 13395	n:20000
KS ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
MAML3   20000 perm   5 sec   (3969 perm/sec)   p_kst 2.715000e-02   p_cons 6.697500e-01   p_joint 6.315000e-02

Joint ci ratio: 8.740425e-02	ci left: 6.008051e-02	ci right 6.560452e-02	k: 1884	n:30000
Cons ci ratio: 1.582923e-02	ci left: 6.661522e-01	ci right 6.768145e-01	k: 20145	n:30000
KS ci ratio: 1.370829e-01	ci left: 2.471178e-02	ci right 2.838068e-02	k: 795	n:30000
MAML3   30000 perm   8 sec   (3815 perm/sec)   p_kst 2.650000e-02   p_cons 6.715000e-01   p_joint 6.280000e-02

Joint ci ratio: 8.062434e-02	ci left: 5.354588e-02	ci right 5.806887e-02	k: 2231	n:40000
Cons ci ratio: 1.370393e-02	ci left: 6.670230e-01	ci right 6.762520e-01	k: 26866	n:40000
KS ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
MAML3   40000 perm   12 sec   (3363 perm/sec)   p_kst 2.602500e-02   p_cons 6.716500e-01   p_joint 5.577500e-02

Joint ci ratio: 7.733022e-02	ci left: 4.698667e-02	ci right 5.078592e-02	k: 2443	n:50000
Cons ci ratio: 1.224082e-02	ci left: 6.681057e-01	ci right 6.763543e-01	k: 33612	n:50000
KS ci ratio: 1.036315e-01	ci left: 2.637647e-02	ci right 2.927870e-02	k: 1390	n:50000
MAML3   50000 perm   16 sec   (3162 perm/sec)   p_kst 2.780000e-02   p_cons 6.722400e-01   p_joint 4.886000e-02

Joint ci ratio: 7.084441e-02	ci left: 4.682742e-02	ci right 5.028308e-02	k: 2912	n:60000
Cons ci ratio: 1.119436e-02	ci left: 6.676752e-01	ci right 6.752082e-01	k: 40287	n:60000
KS ci ratio: 9.525589e-02	ci left: 2.614091e-02	ci right 2.877173e-02	k: 1646	n:60000
MAML3   60000 perm   19 sec   (3090 perm/sec)   p_kst 2.743333e-02   p_cons 6.714500e-01   p_joint 4.853333e-02

Outputting figure to mutsig2_images.part000000000101/MAML3.7_3429_60000_0.027433_0.67145_0.048533.png
                gene_name: MAML3
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 29 percent done.
MAP3K11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
Cons ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
KS ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
MAP3K11   10000 perm   2 sec   (5190 perm/sec)   p_kst 4.230000e-02   p_cons 2.766000e-01   p_joint 7.480000e-02

Joint ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
Cons ci ratio: 4.554833e-02	ci left: 2.640545e-01	ci right 2.764124e-01	k: 5404	n:20000
KS ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
MAP3K11   20000 perm   5 sec   (4423 perm/sec)   p_kst 4.470000e-02   p_cons 2.702000e-01   p_joint 6.020000e-02

Joint ci ratio: 8.228152e-02	ci left: 6.743212e-02	ci right 7.325142e-02	k: 2109	n:30000
Cons ci ratio: 3.715403e-02	ci left: 2.655784e-01	ci right 2.756660e-01	k: 8118	n:30000
KS ci ratio: 1.045026e-01	ci left: 4.245416e-02	ci right 4.716783e-02	k: 1343	n:30000
MAP3K11   30000 perm   7 sec   (4090 perm/sec)   p_kst 4.476667e-02   p_cons 2.706000e-01   p_joint 7.030000e-02

Joint ci ratio: 7.438214e-02	ci left: 6.250497e-02	ci right 6.735842e-02	k: 2596	n:40000
Cons ci ratio: 3.217093e-02	ci left: 2.663251e-01	ci right 2.750582e-01	k: 10827	n:40000
KS ci ratio: 9.232391e-02	ci left: 4.113056e-02	ci right 4.513611e-02	k: 1724	n:40000
MAP3K11   40000 perm   10 sec   (4103 perm/sec)   p_kst 4.310000e-02   p_cons 2.706750e-01   p_joint 6.490000e-02

Outputting figure to mutsig2_images.part000000000101/MAP3K11.7_2584_40000_0.0431_0.27067_0.0649.png
                gene_name: MAP3K11
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.067 

Current progress: 30 percent done.
MAGEA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
MAGEA3   10000 perm   2 sec   (5766 perm/sec)   p_kst 4.120000e-02   p_cons 7.950000e-01   p_joint 9.800000e-02

Joint ci ratio: 7.145284e-02	ci left: 1.261067e-01	ci right 1.355010e-01	k: 2615	n:20000
Cons ci ratio: 1.411890e-02	ci left: 7.883274e-01	ci right 7.995870e-01	k: 15880	n:20000
KS ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
MAGEA3   20000 perm   4 sec   (5129 perm/sec)   p_kst 4.095000e-02   p_cons 7.940000e-01   p_joint 1.307500e-01

Joint ci ratio: 7.687015e-02	ci left: 7.669223e-02	ci right 8.285611e-02	k: 2392	n:30000
Cons ci ratio: 1.148921e-02	ci left: 7.904875e-01	ci right 7.996553e-01	k: 23853	n:30000
KS ci ratio: 1.080431e-01	ci left: 3.975795e-02	ci right 4.433128e-02	k: 1260	n:30000
MAGEA3   30000 perm   6 sec   (4904 perm/sec)   p_kst 4.200000e-02   p_cons 7.951000e-01   p_joint 7.973333e-02

Joint ci ratio: 6.640977e-02	ci left: 7.745791e-02	ci right 8.280323e-02	k: 3204	n:40000
Cons ci ratio: 9.946866e-03	ci left: 7.912114e-01	ci right 7.991457e-01	k: 31808	n:40000
KS ci ratio: 9.305924e-02	ci left: 4.049500e-02	ci right 4.447176e-02	k: 1698	n:40000
MAGEA3   40000 perm   8 sec   (4761 perm/sec)   p_kst 4.245000e-02   p_cons 7.952000e-01   p_joint 8.010000e-02

Outputting figure to mutsig2_images.part000000000101/MAGEA3.6_949_40000_0.04245_0.7952_0.0801.png
                gene_name: MAGEA3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 32 percent done.
MAGEB6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.036694e-02	ci left: 9.296799e-01	ci right 9.394650e-01	k: 9347	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
MAGEB6   10000 perm   2 sec   (5559 perm/sec)   p_kst 7.593000e-01   p_cons 9.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEB6.5_1228_10000_0.7593_0.9347_1.png
                gene_name: MAGEB6
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
MAGED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
Cons ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
MAGED1   10000 perm   2 sec   (5407 perm/sec)   p_kst 1.063000e-01   p_cons 2.061000e-01   p_joint 9.310000e-02

Joint ci ratio: 7.272146e-02	ci left: 1.222179e-01	ci right 1.314909e-01	k: 2536	n:20000
Cons ci ratio: 5.421092e-02	ci left: 2.016008e-01	ci right 2.128844e-01	k: 4144	n:20000
KS ci ratio: 8.148920e-02	ci left: 9.945851e-02	ci right 1.079571e-01	k: 2073	n:20000
MAGED1   20000 perm   4 sec   (4837 perm/sec)   p_kst 1.036500e-01   p_cons 2.072000e-01   p_joint 1.268000e-01

Outputting figure to mutsig2_images.part000000000101/MAGED1.6_2553_20000_0.10365_0.2072_0.1268.png
                gene_name: MAGED1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 35 percent done.
MALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
Cons ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
KS ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
MALT1   10000 perm   2 sec   (4954 perm/sec)   p_kst 2.684000e-01   p_cons 5.580000e-02   p_joint 1.386000e-01

Joint ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 4.489348e-02	ci left: 2.697630e-01	ci right 2.822021e-01	k: 5519	n:20000
MALT1   20000 perm   4 sec   (4477 perm/sec)   p_kst 2.759500e-01   p_cons 5.655000e-02   p_joint 1.093000e-01

Joint ci ratio: 5.519424e-02	ci left: 1.399462e-01	ci right 1.479229e-01	k: 4317	n:30000
Cons ci ratio: 9.057372e-02	ci left: 5.609886e-02	ci right 6.145366e-02	k: 1762	n:30000
KS ci ratio: 3.667379e-02	ci left: 2.707149e-01	ci right 2.808619e-01	k: 8273	n:30000
MALT1   30000 perm   7 sec   (4276 perm/sec)   p_kst 2.757667e-01   p_cons 5.873333e-02   p_joint 1.439000e-01

Outputting figure to mutsig2_images.part000000000101/MALT1.6_2543_30000_0.27577_0.058733_0.1439.png
                gene_name: MALT1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 37 percent done.
MAP2K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
KS ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
MAP2K1   10000 perm   2 sec   (5981 perm/sec)   p_kst 4.039000e-01   p_cons 6.093000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K1.6_1226_10000_0.4039_0.6093_0.4849.png
                gene_name: MAP2K1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 38 percent done.
MAP2K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
Cons ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
KS ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
MAP2K3   10000 perm   2 sec   (6078 perm/sec)   p_kst 5.843000e-01   p_cons 4.678000e-01   p_joint 6.380000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K3.6_1092_10000_0.5843_0.4678_0.638.png
                gene_name: MAP2K3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 40 percent done.
MAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
Cons ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
KS ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
MAG   10000 perm   2 sec   (5412 perm/sec)   p_kst 2.997000e-01   p_cons 4.229000e-01   p_joint 3.240000e-01

Outputting figure to mutsig2_images.part000000000101/MAG.5_1954_10000_0.2997_0.4229_0.324.png
                gene_name: MAG
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 41 percent done.
MAGEA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
Cons ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
KS ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
MAGEA4   10000 perm   2 sec   (6059 perm/sec)   p_kst 3.232000e-01   p_cons 3.800000e-01   p_joint 4.419000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA4.5_958_10000_0.3232_0.38_0.4419.png
                gene_name: MAGEA4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 43 percent done.
MAGEA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
Cons ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
MAGEA6   10000 perm   2 sec   (6076 perm/sec)   p_kst 1.240000e-02   p_cons 8.031000e-01   p_joint 2.080000e-02

Joint ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
Cons ci ratio: 1.280869e-02	ci left: 8.187008e-01	ci right 8.293048e-01	k: 16481	n:20000
KS ci ratio: 2.410476e-01	ci left: 1.147624e-02	ci right 1.466766e-02	k: 260	n:20000
MAGEA6   20000 perm   4 sec   (5402 perm/sec)   p_kst 1.300000e-02   p_cons 8.240500e-01   p_joint 2.815000e-02

Joint ci ratio: 1.530433e-01	ci left: 1.976016e-02	ci right 2.306676e-02	k: 641	n:30000
Cons ci ratio: 1.035762e-02	ci left: 8.225033e-01	ci right 8.311000e-01	k: 24805	n:30000
KS ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
MAGEA6   30000 perm   6 sec   (5148 perm/sec)   p_kst 1.313333e-02   p_cons 8.268333e-01   p_joint 2.136667e-02

Joint ci ratio: 1.390726e-01	ci left: 1.811911e-02	ci right 2.085128e-02	k: 778	n:40000
Cons ci ratio: 8.998338e-03	ci left: 8.221730e-01	ci right 8.296296e-01	k: 33037	n:40000
KS ci ratio: 1.680191e-01	ci left: 1.229615e-02	ci right 1.457530e-02	k: 536	n:40000
MAGEA6   40000 perm   8 sec   (4969 perm/sec)   p_kst 1.340000e-02   p_cons 8.259250e-01   p_joint 1.945000e-02

Joint ci ratio: 1.189458e-01	ci left: 1.999405e-02	ci right 2.254195e-02	k: 1062	n:50000
Cons ci ratio: 8.028869e-03	ci left: 8.232728e-01	ci right 8.299293e-01	k: 41331	n:50000
KS ci ratio: 1.506513e-01	ci left: 1.235273e-02	ci right 1.438435e-02	k: 667	n:50000
MAGEA6   50000 perm   10 sec   (4831 perm/sec)   p_kst 1.334000e-02   p_cons 8.266200e-01   p_joint 2.124000e-02

Joint ci ratio: 1.021986e-01	ci left: 2.270885e-02	ci right 2.517082e-02	k: 1435	n:60000
Cons ci ratio: 7.352387e-03	ci left: 8.226572e-01	ci right 8.287446e-01	k: 49543	n:60000
KS ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
MAGEA6   60000 perm   13 sec   (4714 perm/sec)   p_kst 1.306667e-02   p_cons 8.257167e-01   p_joint 2.391667e-02

Joint ci ratio: 1.017286e-01	ci left: 1.971374e-02	ci right 2.184053e-02	k: 1453	n:70000
Cons ci ratio: 6.799260e-03	ci left: 8.232141e-01	ci right 8.288446e-01	k: 57823	n:70000
KS ci ratio: 1.304856e-01	ci left: 1.189741e-02	ci right 1.357191e-02	k: 890	n:70000
MAGEA6   70000 perm   15 sec   (4617 perm/sec)   p_kst 1.271429e-02   p_cons 8.260429e-01   p_joint 2.075714e-02

Joint ci ratio: 9.098805e-02	ci left: 2.164230e-02	ci right 2.371751e-02	k: 1813	n:80000
Cons ci ratio: 6.363278e-03	ci left: 8.232543e-01	ci right 8.285220e-01	k: 66072	n:80000
KS ci ratio: 1.216526e-01	ci left: 1.203250e-02	ci right 1.360312e-02	k: 1024	n:80000
MAGEA6   80000 perm   18 sec   (4527 perm/sec)   p_kst 1.280000e-02   p_cons 8.259000e-01   p_joint 2.266250e-02

Joint ci ratio: 9.209465e-02	ci left: 1.882377e-02	ci right 2.065182e-02	k: 1775	n:90000
Cons ci ratio: 5.995872e-03	ci left: 8.235742e-01	ci right 8.285381e-01	k: 74346	n:90000
KS ci ratio: 1.124982e-01	ci left: 1.256174e-02	ci right 1.406987e-02	k: 1197	n:90000
MAGEA6   90000 perm   20 sec   (4442 perm/sec)   p_kst 1.330000e-02   p_cons 8.260667e-01   p_joint 1.972222e-02

Joint ci ratio: 8.697238e-02	ci left: 1.904336e-02	ci right 2.078464e-02	k: 1990	n:100000
Cons ci ratio: 5.678016e-03	ci left: 8.242189e-01	ci right 8.289221e-01	k: 82658	n:100000
KS ci ratio: 1.067704e-01	ci left: 1.258939e-02	ci right 1.401904e-02	k: 1329	n:100000
MAGEA6   100000 perm   23 sec   (4362 perm/sec)   p_kst 1.329000e-02   p_cons 8.265800e-01   p_joint 1.990000e-02

Joint ci ratio: 8.281120e-02	ci left: 1.913626e-02	ci right 2.079827e-02	k: 2195	n:110000
Cons ci ratio: 5.407728e-03	ci left: 8.246511e-01	ci right 8.291317e-01	k: 90959	n:110000
KS ci ratio: 1.019783e-01	ci left: 1.257817e-02	ci right 1.393859e-02	k: 1457	n:110000
MAGEA6   110000 perm   26 sec   (4282 perm/sec)   p_kst 1.324545e-02   p_cons 8.269000e-01   p_joint 1.995455e-02

Joint ci ratio: 7.735780e-02	ci left: 2.013894e-02	ci right 2.176766e-02	k: 2513	n:120000
Cons ci ratio: 5.180064e-03	ci left: 8.246050e-01	ci right 8.288959e-01	k: 99211	n:120000
KS ci ratio: 9.876131e-02	ci left: 1.231795e-02	ci right 1.360575e-02	k: 1554	n:120000
MAGEA6   120000 perm   29 sec   (4203 perm/sec)   p_kst 1.295000e-02   p_cons 8.267583e-01   p_joint 2.094167e-02

Outputting figure to mutsig2_images.part000000000101/MAGEA6.5_949_120000_0.01295_0.82676_0.020942.png
                gene_name: MAGEA6
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 44 percent done.
MAGEA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
MAGEA8   10000 perm   2 sec   (6049 perm/sec)   p_kst 6.935000e-01   p_cons 2.957000e-01   p_joint 7.473000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA8.5_961_10000_0.6935_0.2957_0.7473.png
                gene_name: MAGEA8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 46 percent done.
MAGEB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
Cons ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
KS ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
MAGEB16   10000 perm   2 sec   (6054 perm/sec)   p_kst 2.187000e-01   p_cons 3.924000e-01   p_joint 3.506000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB16.5_979_10000_0.2187_0.3924_0.3506.png
                gene_name: MAGEB16
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 48 percent done.
MAGEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
MAGEB2   10000 perm   2 sec   (6036 perm/sec)   p_kst 9.788000e-01   p_cons 4.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEB2.5_964_10000_0.9788_0.4082_1.png
                gene_name: MAGEB2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
MAGEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881357e-02	ci left: 8.050140e-01	ci right 8.204033e-01	k: 8128	n:10000
Cons ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
MAGEB3   10000 perm   2 sec   (5791 perm/sec)   p_kst 6.935000e-01   p_cons 6.641000e-01   p_joint 8.128000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB3.5_1045_10000_0.6935_0.6641_0.8128.png
                gene_name: MAGEB3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 51 percent done.
MAGEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
Cons ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
KS ci ratio: 1.592340e-02	ci left: 8.514124e-01	ci right 8.651781e-01	k: 8584	n:10000
MAGEB4   10000 perm   2 sec   (5767 perm/sec)   p_kst 8.584000e-01   p_cons 8.714000e-01   p_joint 9.726000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB4.5_1045_10000_0.8584_0.8714_0.9726.png
                gene_name: MAGEB4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 52 percent done.
MAGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
Cons ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
KS ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
MAGT1   10000 perm   2 sec   (5916 perm/sec)   p_kst 5.703000e-01   p_cons 6.367000e-01   p_joint 7.016000e-01

Outputting figure to mutsig2_images.part000000000101/MAGT1.5_1144_10000_0.5703_0.6367_0.7016.png
                gene_name: MAGT1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 54 percent done.
MAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
Cons ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
KS ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
MAML1   10000 perm   2 sec   (5202 perm/sec)   p_kst 4.116000e-01   p_cons 6.809000e-01   p_joint 6.491000e-01

Outputting figure to mutsig2_images.part000000000101/MAML1.5_3071_10000_0.4116_0.6809_0.6491.png
                gene_name: MAML1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 56 percent done.
MAP3K12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
KS ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
MAP3K12   10000 perm   2 sec   (5021 perm/sec)   p_kst 5.590000e-01   p_cons 3.115000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000101/MAP3K12.5_2636_10000_0.559_0.3115_0.5089.png
                gene_name: MAP3K12
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 57 percent done.
MAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.669611e-02	ci left: 4.036251e-01	ci right 4.230255e-01	k: 4133	n:10000
KS ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
MAF1   10000 perm   2 sec   (6229 perm/sec)   p_kst 7.975000e-01   p_cons 4.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAF1.4_799_10000_0.7975_0.4133_1.png
                gene_name: MAF1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
MAGEA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
Cons ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
KS ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
MAGEA12   10000 perm   2 sec   (6094 perm/sec)   p_kst 4.022000e-01   p_cons 1.385000e-01   p_joint 3.391000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA12.4_949_10000_0.4022_0.1385_0.3391.png
                gene_name: MAGEA12
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
MAGEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
Cons ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
KS ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
MAGEB1   10000 perm   2 sec   (6094 perm/sec)   p_kst 5.698000e-01   p_cons 1.319000e-01   p_joint 2.941000e-01

Joint ci ratio: 3.291012e-02	ci left: 4.081092e-01	ci right 4.218155e-01	k: 8299	n:20000
Cons ci ratio: 7.067778e-02	ci left: 1.285686e-01	ci right 1.380383e-01	k: 2665	n:20000
KS ci ratio: 2.403436e-02	ci left: 5.639054e-01	ci right 5.776740e-01	k: 11416	n:20000
MAGEB1   20000 perm   4 sec   (5428 perm/sec)   p_kst 5.708000e-01   p_cons 1.332500e-01   p_joint 4.149500e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB1.4_1048_20000_0.5708_0.13325_0.41495.png
                gene_name: MAGEB1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
MAGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
Cons ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
KS ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
MAGI3   10000 perm   2 sec   (4747 perm/sec)   p_kst 4.678000e-01   p_cons 7.463000e-01   p_joint 6.617000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI3.4_4584_10000_0.4678_0.7463_0.6617.png
                gene_name: MAGI3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 63 percent done.
MAN2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
MAN2C1   10000 perm   2 sec   (5416 perm/sec)   p_kst 7.302000e-01   p_cons 3.660000e-02   p_joint 7.810000e-02

Joint ci ratio: 6.594358e-02	ci left: 1.451761e-01	ci right 1.551258e-01	k: 3002	n:20000
Cons ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
KS ci ratio: 1.671610e-02	ci left: 7.271124e-01	ci right 7.394197e-01	k: 14666	n:20000
MAN2C1   20000 perm   4 sec   (4873 perm/sec)   p_kst 7.333000e-01   p_cons 3.725000e-02   p_joint 1.501000e-01

Joint ci ratio: 6.314559e-02	ci left: 1.102273e-01	ci right 1.174477e-01	k: 3414	n:30000
Cons ci ratio: 1.139233e-01	ci left: 3.579979e-02	ci right 4.015694e-02	k: 1138	n:30000
KS ci ratio: 1.407959e-02	ci left: 7.158533e-01	ci right 7.260372e-01	k: 21629	n:30000
MAN2C1   30000 perm   6 sec   (4663 perm/sec)   p_kst 7.209667e-01   p_cons 3.793333e-02   p_joint 1.138000e-01

Joint ci ratio: 5.156789e-02	ci left: 1.229604e-01	ci right 1.294939e-01	k: 5048	n:40000
Cons ci ratio: 9.851486e-02	ci left: 3.619623e-02	ci right 3.997121e-02	k: 1522	n:40000
KS ci ratio: 1.218777e-02	ci left: 7.167270e-01	ci right 7.255409e-01	k: 28846	n:40000
MAN2C1   40000 perm   9 sec   (4528 perm/sec)   p_kst 7.211500e-01   p_cons 3.805000e-02   p_joint 1.262000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2C1.4_3227_40000_0.72115_0.03805_0.1262.png
                gene_name: MAN2C1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 65 percent done.
MANBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
KS ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
MANBA   10000 perm   2 sec   (5307 perm/sec)   p_kst 8.210000e-01   p_cons 4.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MANBA.4_2708_10000_0.821_0.4028_1.png
                gene_name: MANBA
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
MANEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
Cons ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
KS ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
MANEA   10000 perm   2 sec   (6284 perm/sec)   p_kst 2.876000e-01   p_cons 7.329000e-01   p_joint 5.610000e-01

Outputting figure to mutsig2_images.part000000000101/MANEA.4_1405_10000_0.2876_0.7329_0.561.png
                gene_name: MANEA
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 68 percent done.
MAP1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
MAP1D   10000 perm   2 sec   (6002 perm/sec)   p_kst 6.747000e-01   p_cons 9.889000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAP1D.4_1048_10000_0.6747_0.9889_1.png
                gene_name: MAP1D
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
MAP3K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
MAP3K1   10000 perm   2 sec   (4672 perm/sec)   p_kst 7.941000e-01   p_cons 5.610000e-02   p_joint 4.962000e-01

Joint ci ratio: 3.683424e-02	ci left: 3.548372e-01	ci right 3.682031e-01	k: 7230	n:20000
Cons ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
KS ci ratio: 1.424394e-02	ci left: 7.853989e-01	ci right 7.967164e-01	k: 15822	n:20000
MAP3K1   20000 perm   5 sec   (4198 perm/sec)   p_kst 7.911000e-01   p_cons 5.510000e-02   p_joint 3.615000e-01

Joint ci ratio: 3.720114e-02	ci left: 2.650814e-01	ci right 2.751631e-01	k: 8103	n:30000
Cons ci ratio: 9.360105e-02	ci left: 5.264230e-02	ci right 5.784425e-02	k: 1656	n:30000
KS ci ratio: 1.167112e-02	ci left: 7.852791e-01	ci right 7.945313e-01	k: 23698	n:30000
MAP3K1   30000 perm   7 sec   (4030 perm/sec)   p_kst 7.899333e-01   p_cons 5.520000e-02   p_joint 2.701000e-01

Outputting figure to mutsig2_images.part000000000101/MAP3K1.4_4619_30000_0.78993_0.0552_0.2701.png
                gene_name: MAP3K1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 71 percent done.
MAGEB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121859e-02	ci left: 7.650660e-01	ci right 7.815745e-01	k: 7734	n:10000
Cons ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KS ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
MAGEB10   10000 perm   2 sec   (6294 perm/sec)   p_kst 5.769000e-01   p_cons 4.755000e-01   p_joint 7.734000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB10.3_1048_10000_0.5769_0.4755_0.7734.png
                gene_name: MAGEB10
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 73 percent done.
MAGED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
KS ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
MAGED2   10000 perm   2 sec   (6337 perm/sec)   p_kst 6.290000e-01   p_cons 7.603000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGED2.3_1865_10000_0.629_0.7603_1.png
                gene_name: MAGED2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
MAGEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
Cons ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
KS ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
MAGEH1   10000 perm   2 sec   (6592 perm/sec)   p_kst 1.192000e-01   p_cons 6.553000e-01   p_joint 2.074000e-01

Joint ci ratio: 5.889187e-02	ci left: 1.759822e-01	ci right 1.867106e-01	k: 3626	n:20000
Cons ci ratio: 2.012938e-02	ci left: 6.480634e-01	ci right 6.612916e-01	k: 13094	n:20000
KS ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
MAGEH1   20000 perm   3 sec   (5802 perm/sec)   p_kst 1.130000e-01   p_cons 6.547000e-01   p_joint 1.813000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEH1.3_664_20000_0.113_0.6547_0.1813.png
                gene_name: MAGEH1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
MAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
Cons ci ratio: 8.007830e-02	ci left: 1.855021e-01	ci right 2.010770e-01	k: 1932	n:10000
KS ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
MAK   10000 perm   2 sec   (5981 perm/sec)   p_kst 3.652000e-01   p_cons 1.932000e-01   p_joint 4.328000e-01

Outputting figure to mutsig2_images.part000000000101/MAK.3_1924_10000_0.3652_0.1932_0.4328.png
                gene_name: MAK
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 78 percent done.
MAML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
MAML2   10000 perm   2 sec   (5424 perm/sec)   p_kst 3.647000e-01   p_cons 8.211000e-01   p_joint 4.909000e-01

Outputting figure to mutsig2_images.part000000000101/MAML2.3_3491_10000_0.3647_0.8211_0.4909.png
                gene_name: MAML2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 79 percent done.
MAN1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
Cons ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
KS ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
MAN1B1   10000 perm   2 sec   (5750 perm/sec)   p_kst 6.924000e-01   p_cons 2.535000e-01   p_joint 5.661000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1B1.3_2152_10000_0.6924_0.2535_0.5661.png
                gene_name: MAN1B1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 81 percent done.
MAN2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.548179e-02	ci left: 5.397853e-01	ci right 5.593858e-01	k: 5496	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
MAN2B2   10000 perm   2 sec   (5579 perm/sec)   p_kst 4.840000e-01   p_cons 3.128000e-01   p_joint 5.496000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2B2.3_3106_10000_0.484_0.3128_0.5496.png
                gene_name: MAN2B2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 83 percent done.
MAOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.220488e-03	ci left: 9.956027e-01	ci right 9.978928e-01	k: 9969	n:10000
KS ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
MAOA   10000 perm   2 sec   (6152 perm/sec)   p_kst 8.060000e-01   p_cons 9.969000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAOA.3_1644_10000_0.806_0.9969_1.png
                gene_name: MAOA
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MAP1LC3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
Cons ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
KS ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
MAP1LC3C   10000 perm   2 sec   (6512 perm/sec)   p_kst 4.275000e-01   p_cons 9.492000e-01   p_joint 6.479000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1LC3C.3_460_10000_0.4275_0.9492_0.6479.png
                gene_name: MAP1LC3C
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 86 percent done.
MAP2K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
KS ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
MAP2K4   10000 perm   2 sec   (6232 perm/sec)   p_kst 1.435000e-01   p_cons 5.390000e-02   p_joint 5.100000e-02

Joint ci ratio: 9.059276e-02	ci left: 8.170910e-02	ci right 8.951187e-02	k: 1711	n:20000
Cons ci ratio: 1.144539e-01	ci left: 5.222078e-02	ci right 5.860924e-02	k: 1107	n:20000
KS ci ratio: 6.758020e-02	ci left: 1.391119e-01	ci right 1.488918e-01	k: 2879	n:20000
MAP2K4   20000 perm   4 sec   (5566 perm/sec)   p_kst 1.439500e-01   p_cons 5.535000e-02   p_joint 8.555000e-02

Joint ci ratio: 1.273824e-01	ci left: 2.864765e-02	ci right 3.257728e-02	k: 917	n:30000
Cons ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
KS ci ratio: 5.488282e-02	ci left: 1.413301e-01	ci right 1.493387e-01	k: 4359	n:30000
MAP2K4   30000 perm   6 sec   (5302 perm/sec)   p_kst 1.453000e-01   p_cons 5.680000e-02   p_joint 3.056667e-02

Joint ci ratio: 8.215583e-02	ci left: 5.163341e-02	ci right 5.608164e-02	k: 2153	n:40000
Cons ci ratio: 8.030097e-02	ci left: 5.396281e-02	ci right 5.850189e-02	k: 2248	n:40000
KS ci ratio: 4.734597e-02	ci left: 1.428252e-01	ci right 1.497762e-01	k: 5851	n:40000
MAP2K4   40000 perm   8 sec   (5132 perm/sec)   p_kst 1.462750e-01   p_cons 5.620000e-02   p_joint 5.382500e-02

Outputting figure to mutsig2_images.part000000000101/MAP2K4.3_1244_40000_0.14627_0.0562_0.053825.png
                gene_name: MAP2K4
               theta_stop: 0.082 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 87 percent done.
MAGEA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
Cons ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
KS ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
MAGEA5   10000 perm   1 sec   (7493 perm/sec)   p_kst 6.275000e-01   p_cons 1.320000e-02   p_joint 1.680000e-02

Joint ci ratio: 1.122713e-01	ci left: 5.421584e-02	ci right 6.071357e-02	k: 1148	n:20000
Cons ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
KS ci ratio: 2.150863e-02	ci left: 6.173948e-01	ci right 6.308691e-01	k: 12483	n:20000
MAGEA5   20000 perm   3 sec   (6552 perm/sec)   p_kst 6.241500e-01   p_cons 1.355000e-02   p_joint 5.740000e-02

Joint ci ratio: 8.400739e-02	ci left: 6.481705e-02	ci right 7.053369e-02	k: 2029	n:30000
Cons ci ratio: 1.925026e-01	ci left: 1.231996e-02	ci right 1.497546e-02	k: 408	n:30000
KS ci ratio: 1.758260e-02	ci left: 6.180892e-01	ci right 6.290868e-01	k: 18708	n:30000
MAGEA5   30000 perm   5 sec   (6188 perm/sec)   p_kst 6.236000e-01   p_cons 1.360000e-02   p_joint 6.763333e-02

Joint ci ratio: 1.348937e-01	ci left: 1.927875e-02	ci right 2.209144e-02	k: 826	n:40000
Cons ci ratio: 1.673883e-01	ci left: 1.239200e-02	ci right 1.467943e-02	k: 540	n:40000
KS ci ratio: 1.524089e-02	ci left: 6.184048e-01	ci right 6.279273e-01	k: 24927	n:40000
MAGEA5   40000 perm   7 sec   (5941 perm/sec)   p_kst 6.231750e-01   p_cons 1.350000e-02   p_joint 2.065000e-02

Joint ci ratio: 7.819180e-02	ci left: 4.598555e-02	ci right 4.974716e-02	k: 2392	n:50000
Cons ci ratio: 1.475480e-01	ci left: 1.289210e-02	ci right 1.496490e-02	k: 695	n:50000
KS ci ratio: 1.365444e-02	ci left: 6.181337e-01	ci right 6.266521e-01	k: 31120	n:50000
MAGEA5   50000 perm   9 sec   (5740 perm/sec)   p_kst 6.224000e-01   p_cons 1.390000e-02   p_joint 4.784000e-02

Joint ci ratio: 7.690935e-02	ci left: 3.990167e-02	ci right 4.310954e-02	k: 2489	n:60000
Cons ci ratio: 1.347088e-01	ci left: 1.297845e-02	ci right 1.486900e-02	k: 834	n:60000
KS ci ratio: 1.245550e-02	ci left: 6.188575e-01	ci right 6.266306e-01	k: 37365	n:60000
MAGEA5   60000 perm   11 sec   (5566 perm/sec)   p_kst 6.227500e-01   p_cons 1.390000e-02   p_joint 4.148333e-02

Joint ci ratio: 7.575409e-02	ci left: 3.544543e-02	ci right 3.825027e-02	k: 2578	n:70000
Cons ci ratio: 1.240188e-01	ci left: 1.319807e-02	ci right 1.495683e-02	k: 984	n:70000
KS ci ratio: 1.153771e-02	ci left: 6.188967e-01	ci right 6.260931e-01	k: 43575	n:70000
MAGEA5   70000 perm   13 sec   (5415 perm/sec)   p_kst 6.225000e-01   p_cons 1.405714e-02   p_joint 3.682857e-02

Joint ci ratio: 1.009480e-01	ci left: 1.756529e-02	ci right 1.944485e-02	k: 1479	n:80000
Cons ci ratio: 1.174305e-01	ci left: 1.293019e-02	ci right 1.455535e-02	k: 1098	n:80000
KS ci ratio: 1.076073e-02	ci left: 6.205201e-01	ci right 6.272459e-01	k: 49911	n:80000
MAGEA5   80000 perm   15 sec   (5278 perm/sec)   p_kst 6.238875e-01   p_cons 1.372500e-02   p_joint 1.848750e-02

Joint ci ratio: 9.537924e-02	ci left: 1.754283e-02	ci right 1.931063e-02	k: 1657	n:90000
Cons ci ratio: 1.110509e-01	ci left: 1.289668e-02	ci right 1.442379e-02	k: 1228	n:90000
KS ci ratio: 1.012753e-02	ci left: 6.215382e-01	ci right 6.278760e-01	k: 56224	n:90000
MAGEA5   90000 perm   17 sec   (5165 perm/sec)   p_kst 6.247111e-01   p_cons 1.364444e-02   p_joint 1.841111e-02

Joint ci ratio: 5.966396e-02	ci left: 4.014403e-02	ci right 4.262266e-02	k: 4137	n:100000
Cons ci ratio: 1.049074e-01	ci left: 1.304711e-02	ci right 1.450129e-02	k: 1376	n:100000
KS ci ratio: 9.612971e-03	ci left: 6.214500e-01	ci right 6.274628e-01	k: 62446	n:100000
MAGEA5   100000 perm   20 sec   (5049 perm/sec)   p_kst 6.244600e-01   p_cons 1.376000e-02   p_joint 4.137000e-02

Joint ci ratio: 8.136739e-02	ci left: 1.982218e-02	ci right 2.151232e-02	k: 2272	n:110000
Cons ci ratio: 9.984834e-02	ci left: 1.312776e-02	ci right 1.451623e-02	k: 1519	n:110000
KS ci ratio: 9.158974e-03	ci left: 6.219310e-01	ci right 6.276625e-01	k: 68728	n:110000
MAGEA5   110000 perm   22 sec   (4940 perm/sec)   p_kst 6.248000e-01   p_cons 1.380909e-02   p_joint 2.065455e-02

Outputting figure to mutsig2_images.part000000000101/MAGEA5.2_379_110000_0.6248_0.013809_0.020655.png
                gene_name: MAGEA5
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 89 percent done.
MAGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
MAGEF1   10000 perm   1 sec   (6839 perm/sec)   p_kst 6.907000e-01   p_cons 6.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEF1.2_928_10000_0.6907_0.6894_1.png
                gene_name: MAGEF1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
MAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
Cons ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
KS ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
MAL   10000 perm   1 sec   (7064 perm/sec)   p_kst 3.308000e-01   p_cons 9.007000e-01   p_joint 3.680000e-01

Outputting figure to mutsig2_images.part000000000101/MAL.2_478_10000_0.3308_0.9007_0.368.png
                gene_name: MAL
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 92 percent done.
MAN1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
MAN1C1   10000 perm   2 sec   (6482 perm/sec)   p_kst 8.896000e-01   p_cons 6.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAN1C1.2_1941_10000_0.8896_0.6521_1.png
                gene_name: MAN1C1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MAN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
Cons ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
KS ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
MAN2A2   10000 perm   2 sec   (5550 perm/sec)   p_kst 4.619000e-01   p_cons 6.638000e-01   p_joint 5.905000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2A2.2_3541_10000_0.4619_0.6638_0.5905.png
                gene_name: MAN2A2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 95 percent done.
MAN2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
Cons ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KS ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
MAN2B1   10000 perm   2 sec   (5822 perm/sec)   p_kst 2.050000e-02   p_cons 1.340000e-01   p_joint 4.069000e-01

Joint ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
Cons ci ratio: 7.098530e-02	ci left: 1.275838e-01	ci right 1.370234e-01	k: 2645	n:20000
KS ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
MAN2B1   20000 perm   4 sec   (5197 perm/sec)   p_kst 1.965000e-02   p_cons 1.322500e-01   p_joint 1.352500e-01

Joint ci ratio: 8.534532e-02	ci left: 6.288924e-02	ci right 6.852856e-02	k: 1970	n:30000
Cons ci ratio: 5.832424e-02	ci left: 1.270366e-01	ci right 1.347017e-01	k: 3925	n:30000
KS ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
MAN2B1   30000 perm   6 sec   (4946 perm/sec)   p_kst 2.010000e-02   p_cons 1.308333e-01   p_joint 6.566667e-02

Joint ci ratio: 1.112104e-01	ci left: 2.844726e-02	ci right 3.182141e-02	k: 1204	n:40000
Cons ci ratio: 5.074303e-02	ci left: 1.265209e-01	ci right 1.331329e-01	k: 5192	n:40000
KS ci ratio: 1.344791e-01	ci left: 1.939962e-02	ci right 2.222055e-02	k: 831	n:40000
MAN2B1   40000 perm   8 sec   (4786 perm/sec)   p_kst 2.077500e-02   p_cons 1.298000e-01   p_joint 3.010000e-02

Joint ci ratio: 2.077467e-02	ci left: 4.115748e-01	ci right 4.202350e-01	k: 20795	n:50000
Cons ci ratio: 4.569086e-02	ci left: 1.253803e-01	ci right 1.312629e-01	k: 6415	n:50000
KS ci ratio: 1.192902e-01	ci left: 1.987756e-02	ci right 2.241846e-02	k: 1056	n:50000
MAN2B1   50000 perm   11 sec   (4666 perm/sec)   p_kst 2.112000e-02   p_cons 1.283000e-01   p_joint 4.159000e-01

Joint ci ratio: 6.027507e-02	ci left: 6.386173e-02	ci right 6.784705e-02	k: 3950	n:60000
Cons ci ratio: 4.176656e-02	ci left: 1.253365e-01	ci right 1.306996e-01	k: 7680	n:60000
KS ci ratio: 1.093112e-01	ci left: 1.983515e-02	ci right 2.214484e-02	k: 1258	n:60000
MAN2B1   60000 perm   13 sec   (4561 perm/sec)   p_kst 2.096667e-02   p_cons 1.280000e-01   p_joint 6.583333e-02

Joint ci ratio: 8.433079e-02	ci left: 2.867870e-02	ci right 3.121761e-02	k: 2095	n:70000
Cons ci ratio: 3.877055e-02	ci left: 1.249525e-01	ci right 1.299070e-01	k: 8919	n:70000
KS ci ratio: 1.015504e-01	ci left: 1.978339e-02	ci right 2.191373e-02	k: 1458	n:70000
MAN2B1   70000 perm   16 sec   (4460 perm/sec)   p_kst 2.082857e-02   p_cons 1.274143e-01   p_joint 2.992857e-02

Joint ci ratio: 7.274573e-02	ci left: 3.374941e-02	ci right 3.630945e-02	k: 2801	n:80000
Cons ci ratio: 3.624269e-02	ci left: 1.252581e-01	ci right 1.298940e-01	k: 10205	n:80000
KS ci ratio: 9.483011e-02	ci left: 1.991989e-02	ci right 2.191507e-02	k: 1672	n:80000
MAN2B1   80000 perm   18 sec   (4369 perm/sec)   p_kst 2.090000e-02   p_cons 1.275625e-01   p_joint 3.501250e-02

Outputting figure to mutsig2_images.part000000000101/MAN2B1.2_3132_80000_0.0209_0.12756_0.035013.png
                gene_name: MAN2B1
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 97 percent done.
MAP1LC3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
KS ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
MAP1LC3B2   10000 perm   1 sec   (7015 perm/sec)   p_kst 9.697000e-01   p_cons 3.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAP1LC3B2.2_382_10000_0.9697_0.3812_1.png
                gene_name: MAP1LC3B2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MAP2K7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
Cons ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
KS ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
MAP2K7   10000 perm   2 sec   (6660 perm/sec)   p_kst 6.474000e-01   p_cons 4.075000e-01   p_joint 7.543000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K7.2_1304_10000_0.6474_0.4075_0.7543.png
                gene_name: MAP2K7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000101
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 101 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1556>
Subject: Job 4422163: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1556>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000102> was used as the working directory.
Started at Wed Oct 24 17:58:53 2012
Results reported at Wed Oct 24 18:31:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000102.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000102.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 102  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000102.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2208.94 sec.
    Max Memory :      5305 MB
    Max Swap   :      7756 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
102
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 102
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 102: processing genes 9138 - 9228
Calculating significance of each gene.
Using projection method.
9138	MAP3K13	6.391752e-01
9139	MAP3K14	9.910250e-01
9140	MAP3K15	9.799097e-01
9141	MAP3K2	2.399757e-01
9142	MAP3K3	6.537697e-01
9143	MAP3K4	1
9144	MAP3K5	7.077975e-01
9145	MAP3K6	9.999468e-01
9146	MAP3K7	2.438187e-01
9147	MAP3K8	8.177512e-01
9148	MAP3K9	1.412586e-01
9149	MAP4	9.994996e-01
9150	MAP4K1	8.521161e-01
9151	MAP4K2	1
9152	MAP4K3	7.500123e-01
9153	MAP4K4	1
9154	MAP4K5	7.897619e-01
9155	MAP6	1
9156	MAP7	6.897781e-01
9157	MAP7D1	9.406152e-01
9158	MAP7D2	7.316495e-01
9159	MAP7D3	8.032317e-01
9160	MAP9	3.959983e-01
9161	MAPK1	1
9162	MAPK10	1.548327e-01
9163	MAPK11	7.780318e-01
9164	MAPK12	1
9165	MAPK13	1
9166	MAPK14	7.825533e-01
9167	MAPK15	7.667529e-01
9168	MAPK1IP1L	6.342062e-01
9169	MAPK3	1
9170	MAPK4	1.998906e-01
9171	MAPK6	9.029639e-01
9172	MAPK7	3.685529e-01
9173	MAPK8	1
9174	MAPK8IP1	3.467169e-01
9175	MAPK8IP2	1
9176	MAPK8IP3	9.967780e-01
9177	MAPK9	2.443953e-01
9178	MAPKAP1	5.849313e-01
9179	MAPKAPK2	7.385560e-01
9180	MAPKAPK3	8.712351e-01
9181	MAPKAPK5	6.745762e-01
9182	MAPKBP1	9.997559e-01
9183	MAPKSP1	1
9184	MAPRE1	8.232456e-01
9185	MAPRE2	8.518170e-01
9186	MAPRE3	7.230809e-01
9187	MAPT	3.471680e-01
9188	MARCH1	4.075803e-01
9189	MARCH10	1.386114e-01
9190	MARCH11	2.111051e-05
9191	MARCH2	1
9192	MARCH3	7.320282e-01
9193	MARCH4	3.702831e-01
9194	MARCH5	7.826703e-01
9195	MARCH6	9.929498e-01
9196	MARCH7	9.271706e-01
9197	MARCH8	1.237214e-01
9198	MARCH9	1
9199	MARCKS	1
9200	MARCKSL1	1
9201	MARCO	5.650867e-04
9202	MARK1	8.550108e-01
9203	MARK2	9.564437e-01
9204	MARK3	2.684030e-01
9205	MARK4	1
9206	MARS	9.858243e-01
9207	MARS2	1.824352e-01
9208	MARVELD2	9.468806e-01
9209	MARVELD3	8.050169e-01
9210	MAS1	3.252415e-01
9211	MAS1L	3.212653e-01
9212	MASP1	9.427360e-01
9213	MASP2	9.051070e-01
9214	MAST1	7.976467e-01
9215	MAST2	9.777688e-01
9216	MAST3	8.926910e-01
9217	MAST4	9.999951e-01
9218	MASTL	9.761733e-01
9219	MAT1A	1.674097e-01
9220	MAT2A	7.673088e-01
9221	MAT2B	3.075269e-01
9222	MATK	9.540906e-01
9223	MATN1	1
9224	MATN2	4.306275e-01
9225	MATN3	7.020069e-01
9226	MATN4	6.842257e-01
9227	MATR3	1
9228	MAVS	4.579544e-01
Done

Running MutSig 2:
Scatter job 102: processing genes 9138 - 9228
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MAP3K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
Cons ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
KS ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
MAP3K4   10000 perm   3 sec   (3436 perm/sec)   p_kst 1.078000e-01   p_cons 2.706000e-01   p_joint 1.679000e-01

Joint ci ratio: 6.291445e-02	ci left: 1.574116e-01	ci right 1.676867e-01	k: 3250	n:20000
Cons ci ratio: 4.593249e-02	ci left: 2.607788e-01	ci right 2.730890e-01	k: 5338	n:20000
KS ci ratio: 7.662953e-02	ci left: 1.112489e-01	ci right 1.201632e-01	k: 2313	n:20000
MAP3K4   20000 perm   9 sec   (2213 perm/sec)   p_kst 1.156500e-01   p_cons 2.669000e-01   p_joint 1.625000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K4.14_4935_20000_0.11565_0.2669_0.1625.png
                gene_name: MAP3K4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 2 percent done.
MARCO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MARCO   10000 perm   2 sec   (4712 perm/sec)   p_kst 1   p_cons 7.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARCO.14_1631_10000_1_0.7939_1.png
                gene_name: MARCO
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
MAP3K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
Cons ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
MAP3K5   10000 perm   2 sec   (4014 perm/sec)   p_kst 2.203000e-01   p_cons 2.313000e-01   p_joint 2.257000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K5.12_4245_10000_0.2203_0.2313_0.2257.png
                gene_name: MAP3K5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 5 percent done.
MAP3K9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
Cons ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
KS ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
MAP3K9   10000 perm   2 sec   (4390 perm/sec)   p_kst 2.215000e-01   p_cons 7.449000e-01   p_joint 4.213000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K9.11_3409_10000_0.2215_0.7449_0.4213.png
                gene_name: MAP3K9
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 7 percent done.
MARCH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
Cons ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
MARCH11   10000 perm   2 sec   (4667 perm/sec)   p_kst 3.720000e-02   p_cons 7.800000e-03   p_joint 2.880000e-02

Joint ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
Cons ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
KS ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
MARCH11   20000 perm   5 sec   (4256 perm/sec)   p_kst 3.700000e-02   p_cons 6.950000e-03   p_joint 1.385000e-02

Joint ci ratio: 1.836037e-01	ci left: 1.359134e-02	ci right 1.637042e-02	k: 448	n:30000
Cons ci ratio: 2.790792e-01	ci left: 5.622041e-03	ci right 7.475468e-03	k: 195	n:30000
KS ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
MARCH11   30000 perm   7 sec   (4086 perm/sec)   p_kst 3.950000e-02   p_cons 6.500000e-03   p_joint 1.493333e-02

Joint ci ratio: 1.649332e-01	ci left: 1.277557e-02	ci right 1.509579e-02	k: 556	n:40000
Cons ci ratio: 2.423137e-01	ci left: 5.712489e-03	ci right 7.310422e-03	k: 259	n:40000
KS ci ratio: 9.726032e-02	ci left: 3.712383e-02	ci right 4.094346e-02	k: 1560	n:40000
MARCH11   40000 perm   10 sec   (3950 perm/sec)   p_kst 3.900000e-02   p_cons 6.475000e-03   p_joint 1.390000e-02

Joint ci ratio: 1.122254e-01	ci left: 2.248166e-02	ci right 2.517402e-02	k: 1190	n:50000
Cons ci ratio: 2.150735e-01	ci left: 5.890100e-03	ci right 7.328084e-03	k: 329	n:50000
KS ci ratio: 8.658348e-02	ci left: 3.767239e-02	ci right 4.110135e-02	k: 1968	n:50000
MARCH11   50000 perm   13 sec   (3864 perm/sec)   p_kst 3.936000e-02   p_cons 6.580000e-03   p_joint 2.380000e-02

Joint ci ratio: 1.019082e-01	ci left: 2.283886e-02	ci right 2.530747e-02	k: 1443	n:60000
Cons ci ratio: 1.955902e-01	ci left: 5.999434e-03	ci right 7.315634e-03	k: 398	n:60000
KS ci ratio: 7.889725e-02	ci left: 3.795543e-02	ci right 4.108931e-02	k: 2370	n:60000
MARCH11   60000 perm   16 sec   (3792 perm/sec)   p_kst 3.950000e-02   p_cons 6.633333e-03   p_joint 2.405000e-02

Joint ci ratio: 9.781547e-02	ci left: 2.133040e-02	ci right 2.353801e-02	k: 1569	n:70000
Cons ci ratio: 1.815731e-01	ci left: 6.013545e-03	ci right 7.227896e-03	k: 462	n:70000
KS ci ratio: 7.285528e-02	ci left: 3.826553e-02	ci right 4.117278e-02	k: 2779	n:70000
MARCH11   70000 perm   19 sec   (3728 perm/sec)   p_kst 3.970000e-02   p_cons 6.600000e-03   p_joint 2.241429e-02

Joint ci ratio: 1.033205e-01	ci left: 1.676101e-02	ci right 1.859921e-02	k: 1413	n:80000
Cons ci ratio: 1.700312e-01	ci left: 6.038635e-03	ci right 7.172592e-03	k: 527	n:80000
KS ci ratio: 6.814036e-02	ci left: 3.836975e-02	ci right 4.108876e-02	k: 3177	n:80000
MARCH11   80000 perm   22 sec   (3664 perm/sec)   p_kst 3.971250e-02   p_cons 6.587500e-03   p_joint 1.766250e-02

Joint ci ratio: 9.715538e-02	ci left: 1.690278e-02	ci right 1.863961e-02	k: 1598	n:90000
Cons ci ratio: 1.597664e-01	ci left: 6.113397e-03	ci right 7.185440e-03	k: 597	n:90000
KS ci ratio: 6.437711e-02	ci left: 3.829145e-02	ci right 4.084944e-02	k: 3560	n:90000
MARCH11   90000 perm   25 sec   (3599 perm/sec)   p_kst 3.955556e-02   p_cons 6.633333e-03   p_joint 1.775556e-02

Joint ci ratio: 9.071634e-02	ci left: 1.749781e-02	ci right 1.917029e-02	k: 1832	n:100000
Cons ci ratio: 1.525467e-01	ci left: 6.059388e-03	ci right 7.069553e-03	k: 655	n:100000
KS ci ratio: 6.114328e-02	ci left: 3.827157e-02	ci right 4.069524e-02	k: 3947	n:100000
MARCH11   100000 perm   28 sec   (3540 perm/sec)   p_kst 3.947000e-02   p_cons 6.550000e-03   p_joint 1.832000e-02

Joint ci ratio: 1.029487e-01	ci left: 1.233892e-02	ci right 1.368693e-02	k: 1430	n:110000
Cons ci ratio: 1.430333e-01	ci left: 6.296539e-03	ci right 7.275192e-03	k: 745	n:110000
KS ci ratio: 5.831043e-02	ci left: 3.831173e-02	ci right 4.062172e-02	k: 4340	n:110000
MARCH11   110000 perm   32 sec   (3487 perm/sec)   p_kst 3.945455e-02   p_cons 6.772727e-03   p_joint 1.300000e-02

Joint ci ratio: 9.342693e-02	ci left: 1.378239e-02	ci right 1.514122e-02	k: 1734	n:120000
Cons ci ratio: 1.393625e-01	ci left: 6.093340e-03	ci right 7.014084e-03	k: 785	n:120000
KS ci ratio: 5.750236e-02	ci left: 3.621022e-02	ci right 3.836222e-02	k: 4473	n:120000
MARCH11   120000 perm   35 sec   (3440 perm/sec)   p_kst 3.727500e-02   p_cons 6.541667e-03   p_joint 1.445000e-02

Joint ci ratio: 1.004925e-01	ci left: 1.098750e-02	ci right 1.215752e-02	k: 1503	n:130000
Cons ci ratio: 1.340935e-01	ci left: 6.092663e-03	ci right 6.975719e-03	k: 848	n:130000
KS ci ratio: 5.515692e-02	ci left: 3.636747e-02	ci right 3.843784e-02	k: 4861	n:130000
MARCH11   130000 perm   38 sec   (3388 perm/sec)   p_kst 3.739231e-02   p_cons 6.523077e-03   p_joint 1.156154e-02

Joint ci ratio: 1.005683e-01	ci left: 1.019550e-02	ci right 1.128205e-02	k: 1502	n:140000
Cons ci ratio: 1.294517e-01	ci left: 6.085731e-03	ci right 6.934902e-03	k: 910	n:140000
KS ci ratio: 5.315582e-02	ci left: 3.639802e-02	ci right 3.839263e-02	k: 5234	n:140000
MARCH11   140000 perm   42 sec   (3338 perm/sec)   p_kst 3.738571e-02   p_cons 6.500000e-03   p_joint 1.072857e-02

Joint ci ratio: 9.781605e-02	ci left: 1.007488e-02	ci right 1.111750e-02	k: 1588	n:150000
Cons ci ratio: 1.253905e-01	ci left: 6.067263e-03	ci right 6.885323e-03	k: 970	n:150000
KS ci ratio: 5.152989e-02	ci left: 3.618864e-02	ci right 3.810931e-02	k: 5571	n:150000
MARCH11   150000 perm   46 sec   (3287 perm/sec)   p_kst 3.714000e-02   p_cons 6.466667e-03   p_joint 1.058667e-02

Joint ci ratio: 9.467990e-02	ci left: 1.009786e-02	ci right 1.110749e-02	k: 1695	n:160000
Cons ci ratio: 1.218677e-01	ci left: 6.033285e-03	ci right 6.822260e-03	k: 1027	n:160000
KS ci ratio: 4.980000e-02	ci left: 3.635205e-02	ci right 3.821476e-02	k: 5964	n:160000
MARCH11   160000 perm   49 sec   (3239 perm/sec)   p_kst 3.727500e-02   p_cons 6.418750e-03   p_joint 1.059375e-02

Joint ci ratio: 9.226791e-02	ci left: 1.002088e-02	ci right 1.099592e-02	k: 1785	n:170000
Cons ci ratio: 1.185160e-01	ci left: 6.015008e-03	ci right 6.778443e-03	k: 1086	n:170000
KS ci ratio: 4.828467e-02	ci left: 3.642161e-02	ci right 3.822951e-02	k: 6344	n:170000
MARCH11   170000 perm   53 sec   (3190 perm/sec)   p_kst 3.731765e-02   p_cons 6.388235e-03   p_joint 1.050000e-02

Joint ci ratio: 8.976571e-02	ci left: 1.001251e-02	ci right 1.095892e-02	k: 1886	n:180000
Cons ci ratio: 1.152243e-01	ci left: 6.020610e-03	ci right 6.762089e-03	k: 1149	n:180000
KS ci ratio: 4.690699e-02	ci left: 3.647321e-02	ci right 3.823062e-02	k: 6722	n:180000
MARCH11   180000 perm   57 sec   (3146 perm/sec)   p_kst 3.734444e-02   p_cons 6.383333e-03   p_joint 1.047778e-02

Joint ci ratio: 7.666402e-02	ci left: 1.305302e-02	ci right 1.409874e-02	k: 2578	n:190000
Cons ci ratio: 1.120531e-01	ci left: 6.041235e-03	ci right 6.763423e-03	k: 1215	n:190000
KS ci ratio: 4.570780e-02	ci left: 3.641593e-02	ci right 3.812454e-02	k: 7080	n:190000
MARCH11   190000 perm   61 sec   (3100 perm/sec)   p_kst 3.726316e-02   p_cons 6.394737e-03   p_joint 1.356842e-02

Joint ci ratio: 7.895425e-02	ci left: 1.169405e-02	ci right 1.266016e-02	k: 2434	n:200000
Cons ci ratio: 1.091301e-01	ci left: 6.060048e-03	ci right 6.764373e-03	k: 1281	n:200000
KS ci ratio: 4.461792e-02	ci left: 3.633028e-02	ci right 3.799317e-02	k: 7431	n:200000
MARCH11   200000 perm   65 sec   (3058 perm/sec)   p_kst 3.715500e-02   p_cons 6.405000e-03   p_joint 1.217000e-02

Joint ci ratio: 7.691075e-02	ci left: 1.174886e-02	ci right 1.269325e-02	k: 2565	n:210000
Cons ci ratio: 1.056386e-01	ci left: 6.170019e-03	ci right 6.862756e-03	k: 1367	n:210000
KS ci ratio: 4.350674e-02	ci left: 3.640872e-02	ci right 3.803266e-02	k: 7815	n:210000
MARCH11   210000 perm   70 sec   (3018 perm/sec)   p_kst 3.721429e-02   p_cons 6.509524e-03   p_joint 1.221429e-02

Joint ci ratio: 7.383530e-02	ci left: 1.218269e-02	ci right 1.312112e-02	k: 2782	n:220000
Cons ci ratio: 1.037631e-01	ci left: 6.110875e-03	ci right 6.784047e-03	k: 1417	n:220000
KS ci ratio: 4.258536e-02	ci left: 3.629604e-02	ci right 3.787982e-02	k: 8158	n:220000
MARCH11   220000 perm   74 sec   (2980 perm/sec)   p_kst 3.708182e-02   p_cons 6.440909e-03   p_joint 1.264545e-02

Joint ci ratio: 7.224380e-02	ci left: 1.218229e-02	ci right 1.309961e-02	k: 2906	n:230000
Cons ci ratio: 1.017401e-01	ci left: 6.086638e-03	ci right 6.743286e-03	k: 1474	n:230000
KS ci ratio: 4.170485e-02	ci left: 3.621932e-02	ci right 3.776629e-02	k: 8507	n:230000
MARCH11   230000 perm   78 sec   (2940 perm/sec)   p_kst 3.698696e-02   p_cons 6.408696e-03   p_joint 1.263478e-02

Joint ci ratio: 6.778837e-02	ci left: 1.327561e-02	ci right 1.421119e-02	k: 3297	n:240000
Cons ci ratio: 1.000943e-01	ci left: 6.032033e-03	ci right 6.671644e-03	k: 1523	n:240000
KS ci ratio: 4.088397e-02	ci left: 3.613693e-02	ci right 3.764928e-02	k: 8853	n:240000
MARCH11   240000 perm   83 sec   (2904 perm/sec)   p_kst 3.688750e-02   p_cons 6.345833e-03   p_joint 1.373750e-02

Joint ci ratio: 7.824431e-02	ci left: 9.550899e-03	ci right 1.033253e-02	k: 2484	n:250000
Cons ci ratio: 9.827469e-02	ci left: 6.013093e-03	ci right 6.638436e-03	k: 1580	n:250000
KS ci ratio: 4.010067e-02	ci left: 3.607725e-02	ci right 3.755751e-02	k: 9203	n:250000
MARCH11   250000 perm   87 sec   (2869 perm/sec)   p_kst 3.681200e-02   p_cons 6.320000e-03   p_joint 9.936000e-03

Outputting figure to mutsig2_images.part000000000102/MARCH11.10_1225_250000_0.036812_0.00632_0.009936.png
                gene_name: MARCH11
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.0099 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.010 

Current progress: 8 percent done.
MARK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
Cons ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
KS ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
MARK1   10000 perm   2 sec   (4417 perm/sec)   p_kst 4.980000e-02   p_cons 7.411000e-01   p_joint 9.380000e-02

Joint ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
Cons ci ratio: 1.641928e-02	ci left: 7.341132e-01	ci right 7.463169e-01	k: 14805	n:20000
KS ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
MARK1   20000 perm   5 sec   (3993 perm/sec)   p_kst 4.965000e-02   p_cons 7.402500e-01   p_joint 9.130000e-02

Joint ci ratio: 6.963676e-02	ci left: 9.219684e-02	ci right 9.888173e-02	k: 2865	n:30000
Cons ci ratio: 1.346851e-02	ci left: 7.334541e-01	ci right 7.434330e-01	k: 22154	n:30000
KS ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
MARK1   30000 perm   8 sec   (3793 perm/sec)   p_kst 5.126667e-02   p_cons 7.384667e-01   p_joint 9.550000e-02

Outputting figure to mutsig2_images.part000000000102/MARK1.10_2460_30000_0.051267_0.73847_0.0955.png
                gene_name: MARK1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 10 percent done.
MARCH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
MARCH10   10000 perm   2 sec   (4823 perm/sec)   p_kst 2.202000e-01   p_cons 8.169000e-01   p_joint 3.752000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH10.9_2467_10000_0.2202_0.8169_0.3752.png
                gene_name: MARCH10
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
MARCH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
Cons ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
KS ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
MARCH6   10000 perm   2 sec   (4688 perm/sec)   p_kst 7.620000e-01   p_cons 4.738000e-01   p_joint 8.735000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH6.9_2837_10000_0.762_0.4738_0.8735.png
                gene_name: MARCH6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 13 percent done.
MAP7D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
Cons ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
KS ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
MAP7D2   10000 perm   2 sec   (4483 perm/sec)   p_kst 4.580000e-01   p_cons 9.190000e-01   p_joint 6.814000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7D2.8_2386_10000_0.458_0.919_0.6814.png
                gene_name: MAP7D2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
MAPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
Cons ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
KS ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
MAPT   10000 perm   2 sec   (4879 perm/sec)   p_kst 5.302000e-01   p_cons 8.068000e-01   p_joint 7.595000e-01

Outputting figure to mutsig2_images.part000000000102/MAPT.8_2387_10000_0.5302_0.8068_0.7595.png
                gene_name: MAPT
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 16 percent done.
MARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
KS ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
MARS2   10000 perm   2 sec   (4851 perm/sec)   p_kst 1.260000e-02   p_cons 7.970000e-02   p_joint 1.060000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
KS ci ratio: 2.458647e-01	ci left: 1.100641e-02	ci right 1.413769e-02	k: 250	n:20000
MARS2   20000 perm   5 sec   (4303 perm/sec)   p_kst 1.250000e-02   p_cons 7.610000e-02   p_joint 3.680000e-02

Joint ci ratio: 1.212501e-01	ci left: 3.162187e-02	ci right 3.573575e-02	k: 1009	n:30000
Cons ci ratio: 7.346969e-02	ci left: 8.347369e-02	ci right 8.987329e-02	k: 2599	n:30000
KS ci ratio: 2.000777e-01	ci left: 1.136853e-02	ci right 1.392715e-02	k: 378	n:30000
MARS2   30000 perm   7 sec   (4123 perm/sec)   p_kst 1.260000e-02   p_cons 8.663333e-02   p_joint 3.363333e-02

Joint ci ratio: 1.292602e-01	ci left: 2.102048e-02	ci right 2.394941e-02	k: 898	n:40000
Cons ci ratio: 6.356328e-02	ci left: 8.405851e-02	ci right 8.960165e-02	k: 3472	n:40000
KS ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
MARS2   40000 perm   10 sec   (4010 perm/sec)   p_kst 1.347500e-02   p_cons 8.680000e-02   p_joint 2.245000e-02

Joint ci ratio: 1.419631e-01	ci left: 1.395279e-02	ci right 1.610405e-02	k: 750	n:50000
Cons ci ratio: 5.928027e-02	ci left: 7.803104e-02	ci right 8.281780e-02	k: 4020	n:50000
KS ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
MARS2   50000 perm   13 sec   (3921 perm/sec)   p_kst 1.418000e-02   p_cons 8.040000e-02   p_joint 1.500000e-02

Joint ci ratio: 1.400803e-01	ci left: 1.198019e-02	ci right 1.380071e-02	k: 772	n:60000
Cons ci ratio: 5.415316e-02	ci left: 7.813753e-02	ci right 8.250316e-02	k: 4818	n:60000
KS ci ratio: 1.331015e-01	ci left: 1.330076e-02	ci right 1.521332e-02	k: 854	n:60000
MARS2   60000 perm   16 sec   (3834 perm/sec)   p_kst 1.423333e-02   p_cons 8.030000e-02   p_joint 1.286667e-02

Joint ci ratio: 1.491498e-01	ci left: 9.042210e-03	ci right 1.051314e-02	k: 683	n:70000
Cons ci ratio: 5.039076e-02	ci left: 7.756281e-02	ci right 8.158640e-02	k: 5569	n:70000
KS ci ratio: 1.225137e-01	ci left: 1.353050e-02	ci right 1.531009e-02	k: 1008	n:70000
MARS2   70000 perm   19 sec   (3760 perm/sec)   p_kst 1.440000e-02   p_cons 7.955714e-02   p_joint 9.757143e-03

Joint ci ratio: 1.153208e-01	ci left: 1.341583e-02	ci right 1.506968e-02	k: 1138	n:80000
Cons ci ratio: 4.741487e-02	ci left: 7.684314e-02	ci right 8.058748e-02	k: 6296	n:80000
KS ci ratio: 1.149121e-01	ci left: 1.351299e-02	ci right 1.517251e-02	k: 1146	n:80000
MARS2   80000 perm   22 sec   (3691 perm/sec)   p_kst 1.432500e-02   p_cons 7.870000e-02   p_joint 1.422500e-02

Joint ci ratio: 8.212650e-02	ci left: 2.367399e-02	ci right 2.571236e-02	k: 2221	n:90000
Cons ci ratio: 4.477914e-02	ci left: 7.670691e-02	ci right 8.023143e-02	k: 7061	n:90000
KS ci ratio: 1.079326e-01	ci left: 1.366425e-02	ci right 1.523394e-02	k: 1299	n:90000
MARS2   90000 perm   25 sec   (3622 perm/sec)   p_kst 1.443333e-02   p_cons 7.845556e-02   p_joint 2.467778e-02

Joint ci ratio: 9.163731e-02	ci left: 1.714588e-02	ci right 1.880225e-02	k: 1796	n:100000
Cons ci ratio: 4.253617e-02	ci left: 7.661250e-02	ci right 7.995201e-02	k: 7827	n:100000
KS ci ratio: 1.024099e-01	ci left: 1.369997e-02	ci right 1.518839e-02	k: 1443	n:100000
MARS2   100000 perm   28 sec   (3565 perm/sec)   p_kst 1.443000e-02   p_cons 7.827000e-02   p_joint 1.796000e-02

Joint ci ratio: 9.107163e-02	ci left: 1.580874e-02	ci right 1.732599e-02	k: 1821	n:110000
Cons ci ratio: 4.055870e-02	ci left: 7.668301e-02	ci right 7.986654e-02	k: 8609	n:110000
KS ci ratio: 9.806460e-02	ci left: 1.361555e-02	ci right 1.502841e-02	k: 1574	n:110000
MARS2   110000 perm   31 sec   (3509 perm/sec)   p_kst 1.430909e-02   p_cons 7.826364e-02   p_joint 1.655455e-02

Outputting figure to mutsig2_images.part000000000102/MARS2.8_1786_110000_0.014309_0.078264_0.016555.png
                gene_name: MARS2
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 18 percent done.
MAST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
KS ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
MAST1   10000 perm   2 sec   (4065 perm/sec)   p_kst 3.909000e-01   p_cons 4.630000e-02   p_joint 1.585000e-01

Joint ci ratio: 5.983092e-02	ci left: 1.713868e-01	ci right 1.820073e-01	k: 3533	n:20000
Cons ci ratio: 1.308419e-01	ci left: 4.013335e-02	ci right 4.580049e-02	k: 858	n:20000
KS ci ratio: 3.445227e-02	ci left: 3.861223e-01	ci right 3.997089e-01	k: 7858	n:20000
MAST1   20000 perm   5 sec   (3671 perm/sec)   p_kst 3.929000e-01   p_cons 4.290000e-02   p_joint 1.766500e-01

Joint ci ratio: 5.303836e-02	ci left: 1.499325e-01	ci right 1.581346e-01	k: 4620	n:30000
Cons ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
KS ci ratio: 2.821972e-02	ci left: 3.858712e-01	ci right 3.969498e-01	k: 11742	n:30000
MAST1   30000 perm   8 sec   (3531 perm/sec)   p_kst 3.914000e-01   p_cons 4.470000e-02   p_joint 1.540000e-01

Joint ci ratio: 5.037027e-02	ci left: 1.281778e-01	ci right 1.348258e-01	k: 5259	n:40000
Cons ci ratio: 8.974463e-02	ci left: 4.347829e-02	ci right 4.758801e-02	k: 1820	n:40000
KS ci ratio: 2.443298e-02	ci left: 3.867373e-01	ci right 3.963284e-01	k: 15661	n:40000
MAST1   40000 perm   12 sec   (3423 perm/sec)   p_kst 3.915250e-01   p_cons 4.550000e-02   p_joint 1.314750e-01

Outputting figure to mutsig2_images.part000000000102/MAST1.8_4817_40000_0.39153_0.0455_0.13148.png
                gene_name: MAST1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 20 percent done.
MAST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
MAST4   10000 perm   3 sec   (3307 perm/sec)   p_kst 3.979000e-01   p_cons 4.613000e-01   p_joint 4.923000e-01

Outputting figure to mutsig2_images.part000000000102/MAST4.8_8118_10000_0.3979_0.4613_0.4923.png
                gene_name: MAST4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
MATN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
MATN2   10000 perm   2 sec   (4468 perm/sec)   p_kst 8.660000e-02   p_cons 3.316000e-01   p_joint 1.563000e-01

Joint ci ratio: 8.437829e-02	ci left: 9.327545e-02	ci right 1.015420e-01	k: 1947	n:20000
Cons ci ratio: 3.950477e-02	ci left: 3.233342e-01	ci right 3.364153e-01	k: 6597	n:20000
KS ci ratio: 9.047721e-02	ci left: 8.190496e-02	ci right 8.971595e-02	k: 1715	n:20000
MATN2   20000 perm   5 sec   (4027 perm/sec)   p_kst 8.575000e-02   p_cons 3.298500e-01   p_joint 9.735000e-02

Outputting figure to mutsig2_images.part000000000102/MATN2.8_2943_20000_0.08575_0.32985_0.09735.png
                gene_name: MATN2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 23 percent done.
MAP3K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
MAP3K13   10000 perm   2 sec   (4948 perm/sec)   p_kst 4.606000e-01   p_cons 2.851000e-01   p_joint 5.309000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K13.7_2953_10000_0.4606_0.2851_0.5309.png
                gene_name: MAP3K13
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 25 percent done.
MAPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
Cons ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
KS ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
MAPK4   10000 perm   2 sec   (5479 perm/sec)   p_kst 4.252000e-01   p_cons 1.905000e-01   p_joint 4.216000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK4.6_1784_10000_0.4252_0.1905_0.4216.png
                gene_name: MAPK4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 26 percent done.
MAPK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
Cons ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
MAPK9   10000 perm   2 sec   (5704 perm/sec)   p_kst 5.221000e-01   p_cons 3.686000e-01   p_joint 7.079000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK9.6_1441_10000_0.5221_0.3686_0.7079.png
                gene_name: MAPK9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 28 percent done.
MARCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
Cons ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
MARCH1   10000 perm   2 sec   (5282 perm/sec)   p_kst 6.560000e-02   p_cons 3.840000e-01   p_joint 1.467000e-01

Joint ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
Cons ci ratio: 3.536477e-02	ci left: 3.737641e-01	ci right 3.872707e-01	k: 7610	n:20000
KS ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
MARCH1   20000 perm   4 sec   (4743 perm/sec)   p_kst 6.465000e-02   p_cons 3.805000e-01   p_joint 1.106000e-01

Joint ci ratio: 7.308563e-02	ci left: 8.429313e-02	ci right 9.072035e-02	k: 2624	n:30000
Cons ci ratio: 2.893752e-02	ci left: 3.740041e-01	ci right 3.850193e-01	k: 11385	n:30000
KS ci ratio: 8.691329e-02	ci left: 6.073356e-02	ci right 6.628467e-02	k: 1904	n:30000
MARCH1   30000 perm   7 sec   (4507 perm/sec)   p_kst 6.346667e-02   p_cons 3.795000e-01   p_joint 8.746667e-02

Outputting figure to mutsig2_images.part000000000102/MARCH1.6_1005_30000_0.063467_0.3795_0.087467.png
                gene_name: MARCH1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.091 

Current progress: 30 percent done.
MAP3K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.335591e-02	ci left: 7.292631e-01	ci right 7.465981e-01	k: 7380	n:10000
KS ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
MAP3K2   10000 perm   2 sec   (5447 perm/sec)   p_kst 7.930000e-01   p_cons 7.380000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP3K2.5_1924_10000_0.793_0.738_1.png
                gene_name: MAP3K2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
MAP3K7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
Cons ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KS ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
MAP3K7   10000 perm   2 sec   (5209 perm/sec)   p_kst 6.200000e-03   p_cons 5.716000e-01   p_joint 1.950000e-02

Joint ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
Cons ci ratio: 2.420894e-02	ci left: 5.603491e-01	ci right 5.741314e-01	k: 11345	n:20000
KS ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
MAP3K7   20000 perm   4 sec   (4637 perm/sec)   p_kst 7.250000e-03   p_cons 5.672500e-01   p_joint 1.525000e-02

Joint ci ratio: 2.025272e-01	ci left: 1.108349e-02	ci right 1.361227e-02	k: 369	n:30000
Cons ci ratio: 1.964574e-02	ci left: 5.646416e-01	ci right 5.758781e-01	k: 17108	n:30000
KS ci ratio: 2.651384e-01	ci left: 6.274581e-03	ci right 8.222678e-03	k: 216	n:30000
MAP3K7   30000 perm   7 sec   (4432 perm/sec)   p_kst 7.200000e-03   p_cons 5.702667e-01   p_joint 1.230000e-02

Joint ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
Cons ci ratio: 1.708138e-02	ci left: 5.634537e-01	ci right 5.731863e-01	k: 22733	n:40000
KS ci ratio: 2.266127e-01	ci left: 6.583529e-03	ci right 8.289151e-03	k: 296	n:40000
MAP3K7   40000 perm   9 sec   (4267 perm/sec)   p_kst 7.400000e-03   p_cons 5.683250e-01   p_joint 1.035000e-02

Joint ci ratio: 1.425423e-01	ci left: 1.383701e-02	ci right 1.597985e-02	k: 744	n:50000
Cons ci ratio: 1.528390e-02	ci left: 5.637844e-01	ci right 5.724877e-01	k: 28407	n:50000
KS ci ratio: 2.041484e-01	ci left: 6.572555e-03	ci right 8.085491e-03	k: 365	n:50000
MAP3K7   50000 perm   12 sec   (4160 perm/sec)   p_kst 7.300000e-03   p_cons 5.681400e-01   p_joint 1.488000e-02

Joint ci ratio: 1.413830e-01	ci left: 1.175498e-02	ci right 1.355929e-02	k: 758	n:60000
Cons ci ratio: 1.389617e-02	ci left: 5.661438e-01	ci right 5.740828e-01	k: 34207	n:60000
KS ci ratio: 1.892476e-01	ci left: 6.427890e-03	ci right 7.787108e-03	k: 425	n:60000
MAP3K7   60000 perm   15 sec   (4076 perm/sec)   p_kst 7.083333e-03   p_cons 5.701167e-01   p_joint 1.263333e-02

Joint ci ratio: 1.420813e-01	ci left: 9.992363e-03	ci right 1.153431e-02	k: 752	n:70000
Cons ci ratio: 1.286545e-02	ci left: 5.664369e-01	ci right 5.737858e-01	k: 39908	n:70000
KS ci ratio: 1.759239e-01	ci left: 6.423060e-03	ci right 7.675468e-03	k: 492	n:70000
MAP3K7   70000 perm   18 sec   (3994 perm/sec)   p_kst 7.028571e-03   p_cons 5.701143e-01   p_joint 1.074286e-02

Joint ci ratio: 1.136619e-01	ci left: 1.381667e-02	ci right 1.549379e-02	k: 1171	n:80000
Cons ci ratio: 1.201160e-02	ci left: 5.676116e-01	ci right 5.744832e-01	k: 45684	n:80000
KS ci ratio: 1.643312e-01	ci left: 6.481906e-03	ci right 7.654269e-03	k: 564	n:80000
MAP3K7   80000 perm   20 sec   (3917 perm/sec)   p_kst 7.050000e-03   p_cons 5.710500e-01   p_joint 1.463750e-02

Joint ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
Cons ci ratio: 1.130759e-02	ci left: 5.685483e-01	ci right 5.750248e-01	k: 51461	n:90000
KS ci ratio: 1.573990e-01	ci left: 6.305509e-03	ci right 7.393309e-03	k: 615	n:90000
MAP3K7   90000 perm   23 sec   (3851 perm/sec)   p_kst 6.833333e-03   p_cons 5.717889e-01   p_joint 1.166667e-02

Joint ci ratio: 1.152318e-01	ci left: 1.078037e-02	ci right 1.210820e-02	k: 1143	n:100000
Cons ci ratio: 1.072863e-02	ci left: 5.686560e-01	ci right 5.747998e-01	k: 57173	n:100000
KS ci ratio: 1.501463e-01	ci left: 6.261483e-03	ci right 7.287440e-03	k: 676	n:100000
MAP3K7   100000 perm   26 sec   (3786 perm/sec)   p_kst 6.760000e-03   p_cons 5.717300e-01   p_joint 1.143000e-02

Joint ci ratio: 1.181979e-01	ci left: 9.314508e-03	ci right 1.049337e-02	k: 1088	n:110000
Cons ci ratio: 1.022068e-02	ci left: 5.692152e-01	ci right 5.750719e-01	k: 62936	n:110000
KS ci ratio: 1.433237e-01	ci left: 6.270237e-03	ci right 7.246950e-03	k: 742	n:110000
MAP3K7   110000 perm   30 sec   (3724 perm/sec)   p_kst 6.745455e-03   p_cons 5.721455e-01   p_joint 9.890909e-03

Joint ci ratio: 1.032245e-01	ci left: 1.126164e-02	ci right 1.249545e-02	k: 1424	n:120000
Cons ci ratio: 9.789806e-03	ci left: 5.691279e-01	ci right 5.747353e-01	k: 68632	n:120000
KS ci ratio: 1.372686e-01	ci left: 6.286461e-03	ci right 7.220948e-03	k: 809	n:120000
MAP3K7   120000 perm   33 sec   (3655 perm/sec)   p_kst 6.741667e-03   p_cons 5.719333e-01   p_joint 1.186667e-02

Joint ci ratio: 1.039754e-01	ci left: 1.025272e-02	ci right 1.138465e-02	k: 1405	n:130000
Cons ci ratio: 9.407423e-03	ci left: 5.691510e-01	ci right 5.745381e-01	k: 74340	n:130000
KS ci ratio: 1.304322e-01	ci left: 6.449753e-03	ci right 7.357067e-03	k: 896	n:130000
MAP3K7   130000 perm   36 sec   (3596 perm/sec)   p_kst 6.892308e-03   p_cons 5.718462e-01   p_joint 1.080769e-02

Joint ci ratio: 1.085950e-01	ci left: 8.720399e-03	ci right 9.728657e-03	k: 1290	n:140000
Cons ci ratio: 9.074944e-03	ci left: 5.687241e-01	ci right 5.739158e-01	k: 79985	n:140000
KS ci ratio: 1.258188e-01	ci left: 6.452291e-03	ci right 7.325463e-03	k: 963	n:140000
MAP3K7   140000 perm   40 sec   (3538 perm/sec)   p_kst 6.878571e-03   p_cons 5.713214e-01   p_joint 9.214286e-03

Joint ci ratio: 9.781605e-02	ci left: 1.007488e-02	ci right 1.111750e-02	k: 1588	n:150000
Cons ci ratio: 8.770959e-03	ci left: 5.686041e-01	ci right 5.736199e-01	k: 85667	n:150000
KS ci ratio: 1.216034e-01	ci left: 6.461446e-03	ci right 7.304451e-03	k: 1031	n:150000
MAP3K7   150000 perm   43 sec   (3485 perm/sec)   p_kst 6.873333e-03   p_cons 5.711133e-01   p_joint 1.058667e-02

Joint ci ratio: 1.025478e-01	ci left: 8.585675e-03	ci right 9.519745e-03	k: 1447	n:160000
Cons ci ratio: 8.492680e-03	ci left: 5.686705e-01	ci right 5.735269e-01	k: 91376	n:160000
KS ci ratio: 1.182187e-01	ci left: 6.421350e-03	ci right 7.234175e-03	k: 1091	n:160000
MAP3K7   160000 perm   47 sec   (3432 perm/sec)   p_kst 6.818750e-03   p_cons 5.711000e-01   p_joint 9.043750e-03

Joint ci ratio: 1.021140e-01	ci left: 8.155056e-03	ci right 9.038296e-03	k: 1460	n:170000
Cons ci ratio: 8.237431e-03	ci left: 5.688433e-01	ci right 5.735543e-01	k: 97104	n:170000
KS ci ratio: 1.147015e-01	ci left: 6.431974e-03	ci right 7.220280e-03	k: 1159	n:170000
MAP3K7   170000 perm   50 sec   (3382 perm/sec)   p_kst 6.817647e-03   p_cons 5.712000e-01   p_joint 8.588235e-03

Joint ci ratio: 1.007911e-01	ci left: 7.913116e-03	ci right 8.758389e-03	k: 1499	n:180000
Cons ci ratio: 8.005983e-03	ci left: 5.688709e-01	ci right 5.734491e-01	k: 102809	n:180000
KS ci ratio: 1.118480e-01	ci left: 6.398525e-03	ci right 7.161935e-03	k: 1219	n:180000
MAP3K7   180000 perm   54 sec   (3332 perm/sec)   p_kst 6.772222e-03   p_cons 5.711611e-01   p_joint 8.327778e-03

Joint ci ratio: 9.685631e-02	ci left: 8.133185e-03	ci right 8.966124e-03	k: 1623	n:190000
Cons ci ratio: 7.793092e-03	ci left: 5.688920e-01	ci right 5.733480e-01	k: 108513	n:190000
KS ci ratio: 1.090687e-01	ci left: 6.384176e-03	ci right 7.125730e-03	k: 1282	n:190000
MAP3K7   190000 perm   58 sec   (3282 perm/sec)   p_kst 6.747368e-03   p_cons 5.711211e-01   p_joint 8.542105e-03

Joint ci ratio: 9.581227e-02	ci left: 7.902144e-03	ci right 8.702206e-03	k: 1659	n:200000
Cons ci ratio: 7.590824e-03	ci left: 5.692677e-01	ci right 5.736103e-01	k: 114288	n:200000
KS ci ratio: 1.062883e-01	ci left: 6.395813e-03	ci right 7.118595e-03	k: 1350	n:200000
MAP3K7   200000 perm   62 sec   (3234 perm/sec)   p_kst 6.750000e-03   p_cons 5.714400e-01   p_joint 8.295000e-03

Joint ci ratio: 9.358445e-02	ci left: 7.897780e-03	ci right 8.677789e-03	k: 1739	n:210000
Cons ci ratio: 7.403741e-03	ci left: 5.695945e-01	ci right 5.738321e-01	k: 120060	n:210000
KS ci ratio: 1.037839e-01	ci left: 6.397280e-03	ci right 7.102153e-03	k: 1416	n:210000
MAP3K7   210000 perm   66 sec   (3190 perm/sec)   p_kst 6.742857e-03   p_cons 5.717143e-01   p_joint 8.280952e-03

Joint ci ratio: 9.102726e-02	ci left: 7.978417e-03	ci right 8.743712e-03	k: 1838	n:220000
Cons ci ratio: 7.229367e-03	ci left: 5.699247e-01	ci right 5.740643e-01	k: 125839	n:220000
KS ci ratio: 1.008681e-01	ci left: 6.474125e-03	ci right 7.166238e-03	k: 1499	n:220000
MAP3K7   220000 perm   70 sec   (3147 perm/sec)   p_kst 6.813636e-03   p_cons 5.719955e-01   p_joint 8.354545e-03

Joint ci ratio: 8.885393e-02	ci left: 8.018290e-03	ci right 8.768091e-03	k: 1929	n:230000
Cons ci ratio: 7.074415e-03	ci left: 5.696964e-01	ci right 5.737453e-01	k: 131496	n:230000
KS ci ratio: 9.831011e-02	ci left: 6.527573e-03	ci right 7.206683e-03	k: 1578	n:230000
MAP3K7   230000 perm   74 sec   (3105 perm/sec)   p_kst 6.860870e-03   p_cons 5.717217e-01   p_joint 8.386957e-03

Outputting figure to mutsig2_images.part000000000102/MAP3K7.5_1889_230000_0.0068609_0.57172_0.008387.png
                gene_name: MAP3K7
               theta_stop: 0.098 
                    nperm: 230000 
                     p_ks: 0.0069 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0088 

Current progress: 33 percent done.
MAP4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
MAP4K1   10000 perm   2 sec   (4789 perm/sec)   p_kst 8.788000e-01   p_cons 3.428000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP4K1.5_2692_10000_0.8788_0.3428_1.png
                gene_name: MAP4K1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
MAP4K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 2.810815e-02	ci left: 6.510225e-01	ci right 6.696841e-01	k: 6604	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
MAP4K3   10000 perm   2 sec   (4859 perm/sec)   p_kst 1.100000e-03   p_cons 6.604000e-01   p_joint 1.260000e-02

Joint ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
Cons ci ratio: 1.975674e-02	ci left: 6.565012e-01	ci right 6.696514e-01	k: 13262	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
MAP4K3   20000 perm   5 sec   (4353 perm/sec)   p_kst 1.050000e-03   p_cons 6.631000e-01   p_joint 5.450000e-03

Joint ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
Cons ci ratio: 1.607259e-02	ci left: 6.593589e-01	ci right 6.700759e-01	k: 19942	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
MAP4K3   30000 perm   7 sec   (4128 perm/sec)   p_kst 1.166667e-03   p_cons 6.647333e-01   p_joint 1.206667e-02

Joint ci ratio: 2.095193e-01	ci left: 7.765825e-03	ci right 9.606568e-03	k: 346	n:40000
Cons ci ratio: 1.393446e-02	ci left: 6.595977e-01	ci right 6.688784e-01	k: 26570	n:40000
KS ci ratio: 6.045440e-01	ci left: 7.356550e-04	ci right 1.390274e-03	k: 41	n:40000
MAP4K3   40000 perm   10 sec   (3993 perm/sec)   p_kst 1.025000e-03   p_cons 6.642500e-01   p_joint 8.650000e-03

Joint ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
Cons ci ratio: 1.248101e-02	ci left: 6.594593e-01	ci right 6.677617e-01	k: 33181	n:50000
KS ci ratio: 5.433180e-01	ci left: 7.595484e-04	ci right 1.340896e-03	k: 51	n:50000
MAP4K3   50000 perm   13 sec   (3899 perm/sec)   p_kst 1.020000e-03   p_cons 6.636200e-01   p_joint 6.180000e-03

Joint ci ratio: 1.644300e-01	ci left: 8.611373e-03	ci right 1.016997e-02	k: 562	n:60000
Cons ci ratio: 1.143282e-02	ci left: 6.582825e-01	ci right 6.658685e-01	k: 39725	n:60000
KS ci ratio: 4.682523e-01	ci left: 8.948754e-04	ci right 1.455176e-03	k: 69	n:60000
MAP4K3   60000 perm   16 sec   (3809 perm/sec)   p_kst 1.150000e-03   p_cons 6.620833e-01   p_joint 9.366667e-03

Joint ci ratio: 1.743285e-01	ci left: 6.546031e-03	ci right 7.809624e-03	k: 501	n:70000
Cons ci ratio: 1.060126e-02	ci left: 6.578662e-01	ci right 6.648918e-01	k: 46297	n:70000
KS ci ratio: 4.176077e-01	ci left: 9.955937e-04	ci right 1.532837e-03	k: 87	n:70000
MAP4K3   70000 perm   19 sec   (3732 perm/sec)   p_kst 1.242857e-03   p_cons 6.613857e-01   p_joint 7.157143e-03

Joint ci ratio: 1.850981e-01	ci left: 5.058868e-03	ci right 6.102480e-03	k: 445	n:80000
Cons ci ratio: 9.927616e-03	ci left: 6.575950e-01	ci right 6.641684e-01	k: 52871	n:80000
KS ci ratio: 3.804894e-01	ci left: 1.073617e-03	ci right 1.588642e-03	k: 105	n:80000
MAP4K3   80000 perm   22 sec   (3658 perm/sec)   p_kst 1.312500e-03   p_cons 6.608875e-01   p_joint 5.562500e-03

Joint ci ratio: 1.742941e-01	ci left: 5.101646e-03	ci right 6.086188e-03	k: 502	n:90000
Cons ci ratio: 9.355651e-03	ci left: 6.579858e-01	ci right 6.641816e-01	k: 59498	n:90000
KS ci ratio: 3.561220e-01	ci left: 1.105586e-03	ci right 1.594132e-03	k: 120	n:90000
MAP4K3   90000 perm   25 sec   (3595 perm/sec)   p_kst 1.333333e-03   p_cons 6.610889e-01   p_joint 5.577778e-03

Joint ci ratio: 1.668408e-01	ci left: 5.031835e-03	ci right 5.957203e-03	k: 548	n:100000
Cons ci ratio: 8.878903e-03	ci left: 6.579763e-01	ci right 6.638544e-01	k: 66092	n:100000
KS ci ratio: 3.449124e-01	ci left: 1.067981e-03	ci right 1.521740e-03	k: 128	n:100000
MAP4K3   100000 perm   28 sec   (3537 perm/sec)   p_kst 1.280000e-03   p_cons 6.609200e-01   p_joint 5.480000e-03

Joint ci ratio: 1.613627e-01	ci left: 4.905638e-03	ci right 5.775302e-03	k: 586	n:110000
Cons ci ratio: 8.474844e-03	ci left: 6.576291e-01	ci right 6.632352e-01	k: 72648	n:110000
KS ci ratio: 3.287452e-01	ci left: 1.079085e-03	ci right 1.511535e-03	k: 141	n:110000
MAP4K3   110000 perm   32 sec   (3484 perm/sec)   p_kst 1.281818e-03   p_cons 6.604364e-01   p_joint 5.327273e-03

Joint ci ratio: 1.697360e-01	ci left: 4.049335e-03	ci right 4.808254e-03	k: 530	n:120000
Cons ci ratio: 8.119382e-03	ci left: 6.574537e-01	ci right 6.628219e-01	k: 79217	n:120000
KS ci ratio: 3.136458e-01	ci left: 1.096429e-03	ci right 1.511608e-03	k: 155	n:120000
MAP4K3   120000 perm   35 sec   (3432 perm/sec)   p_kst 1.291667e-03   p_cons 6.601417e-01   p_joint 4.416667e-03

Joint ci ratio: 1.647027e-01	ci left: 3.981060e-03	ci right 4.702863e-03	k: 563	n:130000
Cons ci ratio: 7.810942e-03	ci left: 6.569783e-01	ci right 6.621377e-01	k: 85743	n:130000
KS ci ratio: 3.022379e-01	ci left: 1.097266e-03	ci right 1.494747e-03	k: 167	n:130000
MAP4K3   130000 perm   38 sec   (3379 perm/sec)   p_kst 1.284615e-03   p_cons 6.595615e-01   p_joint 4.330769e-03

Joint ci ratio: 1.696297e-01	ci left: 3.477610e-03	ci right 4.128921e-03	k: 531	n:140000
Cons ci ratio: 7.521024e-03	ci left: 6.574187e-01	ci right 6.623889e-01	k: 92387	n:140000
KS ci ratio: 2.805205e-01	ci left: 1.197680e-03	ci right 1.594861e-03	k: 194	n:140000
MAP4K3   140000 perm   42 sec   (3329 perm/sec)   p_kst 1.385714e-03   p_cons 6.599071e-01   p_joint 3.792857e-03

Joint ci ratio: 1.811128e-01	ci left: 2.831349e-03	ci right 3.401459e-03	k: 466	n:150000
Cons ci ratio: 7.266117e-03	ci left: 6.574962e-01	ci right 6.622976e-01	k: 98985	n:150000
KS ci ratio: 2.735966e-01	ci left: 1.179869e-03	ci right 1.559826e-03	k: 204	n:150000
MAP4K3   150000 perm   46 sec   (3283 perm/sec)   p_kst 1.360000e-03   p_cons 6.599000e-01   p_joint 3.106667e-03

Joint ci ratio: 1.745087e-01	ci left: 2.869383e-03	ci right 3.423863e-03	k: 502	n:160000
Cons ci ratio: 7.036664e-03	ci left: 6.574913e-01	ci right 6.621404e-01	k: 105571	n:160000
KS ci ratio: 2.635047e-01	ci left: 1.199398e-03	ci right 1.569049e-03	k: 220	n:160000
MAP4K3   160000 perm   49 sec   (3238 perm/sec)   p_kst 1.375000e-03   p_cons 6.598188e-01   p_joint 3.137500e-03

Joint ci ratio: 1.775599e-01	ci left: 2.604969e-03	ci right 3.118100e-03	k: 485	n:170000
Cons ci ratio: 6.825870e-03	ci left: 6.576070e-01	ci right 6.621169e-01	k: 112177	n:170000
KS ci ratio: 2.502584e-01	ci left: 1.260943e-03	ci right 1.626986e-03	k: 244	n:170000
MAP4K3   170000 perm   53 sec   (3190 perm/sec)   p_kst 1.435294e-03   p_cons 6.598647e-01   p_joint 2.852941e-03

Joint ci ratio: 1.798138e-01	ci left: 2.396540e-03	ci right 2.875258e-03	k: 473	n:180000
Cons ci ratio: 6.627123e-03	ci left: 6.581067e-01	ci right 6.624881e-01	k: 118854	n:180000
KS ci ratio: 2.434010e-01	ci left: 1.263859e-03	ci right 1.619176e-03	k: 258	n:180000
MAP4K3   180000 perm   57 sec   (3141 perm/sec)   p_kst 1.433333e-03   p_cons 6.603000e-01   p_joint 2.627778e-03

Joint ci ratio: 1.743785e-01	ci left: 2.421306e-03	ci right 2.888811e-03	k: 503	n:190000
Cons ci ratio: 6.446586e-03	ci left: 6.584289e-01	ci right 6.626925e-01	k: 125507	n:190000
KS ci ratio: 2.345113e-01	ci left: 1.296305e-03	ci right 1.645505e-03	k: 278	n:190000
MAP4K3   190000 perm   61 sec   (3097 perm/sec)   p_kst 1.463158e-03   p_cons 6.605632e-01   p_joint 2.647368e-03

Joint ci ratio: 1.723452e-01	ci left: 2.357630e-03	ci right 2.806980e-03	k: 515	n:200000
Cons ci ratio: 6.287114e-03	ci left: 6.582145e-01	ci right 6.623708e-01	k: 132059	n:200000
KS ci ratio: 2.324434e-01	ci left: 1.255024e-03	ci right 1.589694e-03	k: 283	n:200000
MAP4K3   200000 perm   65 sec   (3057 perm/sec)   p_kst 1.415000e-03   p_cons 6.602950e-01   p_joint 2.575000e-03

Joint ci ratio: 1.678504e-01	ci left: 2.373022e-03	ci right 2.812316e-03	k: 543	n:210000
Cons ci ratio: 6.134942e-03	ci left: 6.583127e-01	ci right 6.623686e-01	k: 138672	n:210000
KS ci ratio: 2.265375e-01	ci left: 1.262585e-03	ci right 1.589521e-03	k: 298	n:210000
MAP4K3   210000 perm   70 sec   (3017 perm/sec)   p_kst 1.419048e-03   p_cons 6.603429e-01   p_joint 2.585714e-03

Joint ci ratio: 1.730391e-01	ci left: 2.125882e-03	ci right 2.532862e-03	k: 511	n:220000
Cons ci ratio: 5.994160e-03	ci left: 6.583393e-01	ci right 6.623019e-01	k: 145271	n:220000
KS ci ratio: 2.210600e-01	ci left: 1.269555e-03	ci right 1.589267e-03	k: 313	n:220000
MAP4K3   220000 perm   74 sec   (2978 perm/sec)   p_kst 1.422727e-03   p_cons 6.603227e-01   p_joint 2.322727e-03

Joint ci ratio: 1.331101e-01	ci left: 3.506404e-03	ci right 4.010577e-03	k: 863	n:230000
Cons ci ratio: 5.857816e-03	ci left: 6.587347e-01	ci right 6.626091e-01	k: 151955	n:230000
KS ci ratio: 2.146586e-01	ci left: 1.292461e-03	ci right 1.607275e-03	k: 332	n:230000
MAP4K3   230000 perm   78 sec   (2941 perm/sec)   p_kst 1.443478e-03   p_cons 6.606739e-01   p_joint 3.752174e-03

Joint ci ratio: 1.355838e-01	ci left: 3.235447e-03	ci right 3.710002e-03	k: 832	n:240000
Cons ci ratio: 5.733720e-03	ci left: 6.588351e-01	ci right 6.626277e-01	k: 158576	n:240000
KS ci ratio: 2.090806e-01	ci left: 1.309630e-03	ci right 1.619277e-03	k: 350	n:240000
MAP4K3   240000 perm   83 sec   (2902 perm/sec)   p_kst 1.458333e-03   p_cons 6.607333e-01   p_joint 3.466667e-03

Joint ci ratio: 1.360034e-01	ci left: 3.086693e-03	ci right 3.540943e-03	k: 827	n:250000
Cons ci ratio: 5.617292e-03	ci left: 6.589203e-01	ci right 6.626360e-01	k: 165195	n:250000
KS ci ratio: 2.061664e-01	ci left: 1.295165e-03	ci right 1.596584e-03	k: 360	n:250000
MAP4K3   250000 perm   87 sec   (2866 perm/sec)   p_kst 1.440000e-03   p_cons 6.607800e-01   p_joint 3.308000e-03

Joint ci ratio: 1.344730e-01	ci left: 3.038573e-03	ci right 3.480307e-03	k: 846	n:260000
Cons ci ratio: 5.508813e-03	ci left: 6.589072e-01	ci right 6.625508e-01	k: 171790	n:260000
KS ci ratio: 2.020119e-01	ci left: 1.300095e-03	ci right 1.595813e-03	k: 375	n:260000
MAP4K3   260000 perm   92 sec   (2830 perm/sec)   p_kst 1.442308e-03   p_cons 6.607308e-01   p_joint 3.253846e-03

Joint ci ratio: 1.458946e-01	ci left: 2.472079e-03	ci right 2.864644e-03	k: 719	n:270000
Cons ci ratio: 5.405716e-03	ci left: 6.589513e-01	ci right 6.625267e-01	k: 178400	n:270000
KS ci ratio: 1.973422e-01	ci left: 1.315278e-03	ci right 1.606702e-03	k: 393	n:270000
MAP4K3   270000 perm   97 sec   (2791 perm/sec)   p_kst 1.455556e-03   p_cons 6.607407e-01   p_joint 2.662963e-03

Joint ci ratio: 1.155080e-01	ci left: 3.859738e-03	ci right 4.336331e-03	k: 1146	n:280000
Cons ci ratio: 5.308622e-03	ci left: 6.589571e-01	ci right 6.624681e-01	k: 185000	n:280000
KS ci ratio: 1.880198e-01	ci left: 1.404280e-03	ci right 1.699049e-03	k: 433	n:280000
MAP4K3   280000 perm   102 sec   (2758 perm/sec)   p_kst 1.546429e-03   p_cons 6.607143e-01   p_joint 4.092857e-03

Joint ci ratio: 1.173272e-01	ci left: 3.609441e-03	ci right 4.062632e-03	k: 1111	n:290000
Cons ci ratio: 5.216738e-03	ci left: 6.589493e-01	ci right 6.623992e-01	k: 191596	n:290000
KS ci ratio: 1.846468e-01	ci left: 1.408456e-03	ci right 1.698204e-03	k: 449	n:290000
MAP4K3   290000 perm   107 sec   (2723 perm/sec)   p_kst 1.548276e-03   p_cons 6.606759e-01   p_joint 3.831034e-03

Joint ci ratio: 1.138424e-01	ci left: 3.712489e-03	ci right 4.163844e-03	k: 1180	n:300000
Cons ci ratio: 5.128437e-03	ci left: 6.590326e-01	ci right 6.624243e-01	k: 198219	n:300000
KS ci ratio: 1.830294e-01	ci left: 1.386945e-03	ci right 1.669491e-03	k: 457	n:300000
MAP4K3   300000 perm   111 sec   (2692 perm/sec)   p_kst 1.523333e-03   p_cons 6.607300e-01   p_joint 3.933333e-03

Joint ci ratio: 1.120542e-01	ci left: 3.711848e-03	ci right 4.155569e-03	k: 1218	n:310000
Cons ci ratio: 5.042985e-03	ci left: 6.592433e-01	ci right 6.625795e-01	k: 204883	n:310000
KS ci ratio: 1.797238e-01	ci left: 1.394554e-03	ci right 1.672962e-03	k: 474	n:310000
MAP4K3   310000 perm   116 sec   (2662 perm/sec)   p_kst 1.529032e-03   p_cons 6.609129e-01   p_joint 3.929032e-03

Joint ci ratio: 1.105243e-01	ci left: 3.699144e-03	ci right 4.134915e-03	k: 1252	n:320000
Cons ci ratio: 4.963706e-03	ci left: 6.592568e-01	ci right 6.625403e-01	k: 211488	n:320000
KS ci ratio: 1.756992e-01	ci left: 1.416668e-03	ci right 1.692485e-03	k: 496	n:320000
MAP4K3   320000 perm   122 sec   (2633 perm/sec)   p_kst 1.550000e-03   p_cons 6.609000e-01   p_joint 3.912500e-03

Joint ci ratio: 1.088012e-01	ci left: 3.704937e-03	ci right 4.134150e-03	k: 1292	n:330000
Cons ci ratio: 4.888118e-03	ci left: 6.592637e-01	ci right 6.624971e-01	k: 218091	n:330000
KS ci ratio: 1.734461e-01	ci left: 1.411411e-03	ci right 1.682311e-03	k: 509	n:330000
MAP4K3   330000 perm   127 sec   (2599 perm/sec)   p_kst 1.542424e-03   p_cons 6.608818e-01   p_joint 3.915152e-03

Joint ci ratio: 9.795370e-02	ci left: 4.458514e-03	ci right 4.920578e-03	k: 1593	n:340000
Cons ci ratio: 4.813544e-03	ci left: 6.594885e-01	ci right 6.626735e-01	k: 224768	n:340000
KS ci ratio: 1.707876e-01	ci left: 1.414931e-03	ci right 1.681915e-03	k: 525	n:340000
MAP4K3   340000 perm   132 sec   (2569 perm/sec)   p_kst 1.544118e-03   p_cons 6.610824e-01   p_joint 4.685294e-03

Joint ci ratio: 9.006851e-02	ci left: 5.140329e-03	ci right 5.627915e-03	k: 1883	n:350000
Cons ci ratio: 4.744759e-03	ci left: 6.594662e-01	ci right 6.626054e-01	k: 231363	n:350000
KS ci ratio: 1.687161e-01	ci left: 1.410069e-03	ci right 1.672581e-03	k: 538	n:350000
MAP4K3   350000 perm   138 sec   (2537 perm/sec)   p_kst 1.537143e-03   p_cons 6.610371e-01   p_joint 5.380000e-03

Joint ci ratio: 8.917566e-02	ci left: 5.100727e-03	ci right 5.579510e-03	k: 1921	n:360000
Cons ci ratio: 4.678726e-03	ci left: 6.594566e-01	ci right 6.625520e-01	k: 237962	n:360000
KS ci ratio: 1.665670e-01	ci left: 1.408157e-03	ci right 1.666639e-03	k: 552	n:360000
MAP4K3   360000 perm   144 sec   (2497 perm/sec)   p_kst 1.533333e-03   p_cons 6.610056e-01   p_joint 5.336111e-03

Joint ci ratio: 8.883434e-02	ci left: 5.002496e-03	ci right 5.470168e-03	k: 1936	n:370000
Cons ci ratio: 4.613788e-03	ci left: 6.596020e-01	ci right 6.626549e-01	k: 244618	n:370000
KS ci ratio: 1.646436e-01	ci left: 1.403778e-03	ci right 1.658185e-03	k: 565	n:370000
MAP4K3   370000 perm   150 sec   (2470 perm/sec)   p_kst 1.527027e-03   p_cons 6.611297e-01   p_joint 5.232432e-03

Joint ci ratio: 8.775421e-02	ci left: 4.994377e-03	ci right 5.455322e-03	k: 1984	n:380000
Cons ci ratio: 4.550438e-03	ci left: 6.598428e-01	ci right 6.628548e-01	k: 251313	n:380000
KS ci ratio: 1.630676e-01	ci left: 1.394596e-03	ci right 1.644683e-03	k: 576	n:380000
MAP4K3   380000 perm   155 sec   (2444 perm/sec)   p_kst 1.515789e-03   p_cons 6.613500e-01   p_joint 5.221053e-03

Joint ci ratio: 8.823045e-02	ci left: 4.813636e-03	ci right 5.260434e-03	k: 1963	n:390000
Cons ci ratio: 4.490448e-03	ci left: 6.599893e-01	ci right 6.629621e-01	k: 257976	n:390000
KS ci ratio: 1.611248e-01	ci left: 1.393278e-03	ci right 1.639864e-03	k: 590	n:390000
MAP4K3   390000 perm   161 sec   (2419 perm/sec)   p_kst 1.512821e-03   p_cons 6.614769e-01   p_joint 5.033333e-03

Joint ci ratio: 8.938672e-02	ci left: 4.571045e-03	ci right 5.001177e-03	k: 1913	n:400000
Cons ci ratio: 4.433561e-03	ci left: 6.600487e-01	ci right 6.629840e-01	k: 264607	n:400000
KS ci ratio: 1.595142e-01	ci left: 1.387242e-03	ci right 1.630071e-03	k: 602	n:400000
MAP4K3   400000 perm   167 sec   (2395 perm/sec)   p_kst 1.505000e-03   p_cons 6.615175e-01   p_joint 4.782500e-03

Joint ci ratio: 8.906529e-02	ci left: 4.492933e-03	ci right 4.914114e-03	k: 1927	n:410000
Cons ci ratio: 4.379450e-03	ci left: 6.600370e-01	ci right 6.629363e-01	k: 271210	n:410000
KS ci ratio: 1.575664e-01	ci left: 1.388541e-03	ci right 1.628348e-03	k: 617	n:410000
MAP4K3   410000 perm   173 sec   (2371 perm/sec)   p_kst 1.504878e-03   p_cons 6.614878e-01   p_joint 4.700000e-03

Joint ci ratio: 8.820129e-02	ci left: 4.474427e-03	ci right 4.889595e-03	k: 1965	n:420000
Cons ci ratio: 4.326905e-03	ci left: 6.600642e-01	ci right 6.629288e-01	k: 277829	n:420000
KS ci ratio: 1.553202e-01	ci left: 1.396661e-03	ci right 1.634111e-03	k: 635	n:420000
MAP4K3   420000 perm   179 sec   (2349 perm/sec)   p_kst 1.511905e-03   p_cons 6.614976e-01   p_joint 4.678571e-03

Joint ci ratio: 8.697040e-02	ci left: 4.497753e-03	ci right 4.908965e-03	k: 2021	n:430000
Cons ci ratio: 4.275030e-03	ci left: 6.602138e-01	ci right 6.630445e-01	k: 284501	n:430000
KS ci ratio: 1.530502e-01	ci left: 1.406662e-03	ci right 1.641997e-03	k: 654	n:430000
MAP4K3   430000 perm   185 sec   (2326 perm/sec)   p_kst 1.520930e-03   p_cons 6.616302e-01   p_joint 4.700000e-03

Joint ci ratio: 8.658873e-02	ci left: 4.435546e-03	ci right 4.839201e-03	k: 2039	n:440000
Cons ci ratio: 4.225405e-03	ci left: 6.603112e-01	ci right 6.631094e-01	k: 291153	n:440000
KS ci ratio: 1.512143e-01	ci left: 1.409672e-03	ci right 1.642426e-03	k: 670	n:440000
MAP4K3   440000 perm   191 sec   (2304 perm/sec)   p_kst 1.522727e-03   p_cons 6.617114e-01   p_joint 4.634091e-03

Joint ci ratio: 8.604412e-02	ci left: 4.393505e-03	ci right 4.790693e-03	k: 2065	n:450000
Cons ci ratio: 4.176868e-03	ci left: 6.604690e-01	ci right 6.632356e-01	k: 297834	n:450000
KS ci ratio: 1.491172e-01	ci left: 1.418982e-03	ci right 1.649734e-03	k: 689	n:450000
MAP4K3   450000 perm   197 sec   (2284 perm/sec)   p_kst 1.531111e-03   p_cons 6.618533e-01   p_joint 4.588889e-03

Joint ci ratio: 8.561245e-02	ci left: 4.342661e-03	ci right 4.733185e-03	k: 2086	n:460000
Cons ci ratio: 4.130687e-03	ci left: 6.605417e-01	ci right 6.632780e-01	k: 304479	n:460000
KS ci ratio: 1.475224e-01	ci left: 1.419533e-03	ci right 1.647689e-03	k: 704	n:460000
MAP4K3   460000 perm   203 sec   (2263 perm/sec)   p_kst 1.530435e-03   p_cons 6.619109e-01   p_joint 4.534783e-03

Joint ci ratio: 8.474410e-02	ci left: 4.339805e-03	ci right 4.725917e-03	k: 2129	n:470000
Cons ci ratio: 4.087034e-03	ci left: 6.604986e-01	ci right 6.632057e-01	k: 311071	n:470000
KS ci ratio: 1.461812e-01	ci left: 1.415974e-03	ci right 1.641307e-03	k: 717	n:470000
MAP4K3   470000 perm   210 sec   (2242 perm/sec)   p_kst 1.525532e-03   p_cons 6.618532e-01   p_joint 4.529787e-03

Joint ci ratio: 8.474812e-02	ci left: 4.249384e-03	ci right 4.627470e-03	k: 2129	n:480000
Cons ci ratio: 4.043400e-03	ci left: 6.606056e-01	ci right 6.632841e-01	k: 317734	n:480000
KS ci ratio: 1.444805e-01	ci left: 1.420603e-03	ci right 1.643816e-03	k: 734	n:480000
MAP4K3   480000 perm   216 sec   (2222 perm/sec)   p_kst 1.529167e-03   p_cons 6.619458e-01   p_joint 4.435417e-03

Joint ci ratio: 8.419794e-02	ci left: 4.218594e-03	ci right 4.591385e-03	k: 2157	n:490000
Cons ci ratio: 4.000951e-03	ci left: 6.607287e-01	ci right 6.633796e-01	k: 324407	n:490000
KS ci ratio: 1.429330e-01	ci left: 1.423090e-03	ci right 1.644095e-03	k: 750	n:490000
MAP4K3   490000 perm   223 sec   (2202 perm/sec)   p_kst 1.530612e-03   p_cons 6.620551e-01   p_joint 4.402041e-03

Joint ci ratio: 8.447732e-02	ci left: 4.106803e-03	ci right 4.470978e-03	k: 2143	n:500000
Cons ci ratio: 3.960307e-03	ci left: 6.607910e-01	ci right 6.634151e-01	k: 331052	n:500000
KS ci ratio: 1.411580e-01	ci left: 1.431279e-03	ci right 1.650562e-03	k: 769	n:500000
MAP4K3   500000 perm   229 sec   (2182 perm/sec)   p_kst 1.538000e-03   p_cons 6.621040e-01   p_joint 4.286000e-03

Joint ci ratio: 7.918424e-02	ci left: 4.592928e-03	ci right 4.973516e-03	k: 2438	n:510000
Cons ci ratio: 3.921289e-03	ci left: 6.608039e-01	ci right 6.634021e-01	k: 337673	n:510000
KS ci ratio: 1.397138e-01	ci left: 1.433485e-03	ci right 1.650672e-03	k: 785	n:510000
MAP4K3   510000 perm   236 sec   (2163 perm/sec)   p_kst 1.539216e-03   p_cons 6.621039e-01   p_joint 4.780392e-03

Joint ci ratio: 7.840053e-02	ci left: 4.596977e-03	ci right 4.973958e-03	k: 2487	n:520000
Cons ci ratio: 3.883118e-03	ci left: 6.608491e-01	ci right 6.634221e-01	k: 344311	n:520000
KS ci ratio: 1.381407e-01	ci left: 1.439330e-03	ci right 1.654746e-03	k: 803	n:520000
MAP4K3   520000 perm   243 sec   (2144 perm/sec)   p_kst 1.544231e-03   p_cons 6.621365e-01   p_joint 4.782692e-03

Joint ci ratio: 7.880286e-02	ci left: 4.463987e-03	ci right 4.832026e-03	k: 2462	n:530000
Cons ci ratio: 3.846446e-03	ci left: 6.608455e-01	ci right 6.633942e-01	k: 350924	n:530000
KS ci ratio: 1.371216e-01	ci left: 1.434035e-03	ci right 1.646945e-03	k: 815	n:530000
MAP4K3   530000 perm   249 sec   (2125 perm/sec)   p_kst 1.537736e-03   p_cons 6.621208e-01   p_joint 4.645283e-03

Joint ci ratio: 7.874206e-02	ci left: 4.388575e-03	ci right 4.750105e-03	k: 2466	n:540000
Cons ci ratio: 3.810904e-03	ci left: 6.608292e-01	ci right 6.633542e-01	k: 357530	n:540000
KS ci ratio: 1.355521e-01	ci left: 1.441464e-03	ci right 1.652831e-03	k: 834	n:540000
MAP4K3   540000 perm   256 sec   (2106 perm/sec)   p_kst 1.544444e-03   p_cons 6.620926e-01   p_joint 4.566667e-03

Joint ci ratio: 8.067318e-02	ci left: 4.102053e-03	ci right 4.448656e-03	k: 2350	n:550000
Cons ci ratio: 3.777665e-03	ci left: 6.606553e-01	ci right 6.631575e-01	k: 364049	n:550000
KS ci ratio: 1.340353e-01	ci left: 1.448636e-03	ci right 1.658488e-03	k: 853	n:550000
MAP4K3   550000 perm   263 sec   (2088 perm/sec)   p_kst 1.550909e-03   p_cons 6.619073e-01   p_joint 4.272727e-03

Joint ci ratio: 8.097078e-02	ci left: 3.999050e-03	ci right 4.338254e-03	k: 2333	n:560000
Cons ci ratio: 3.743053e-03	ci left: 6.607540e-01	ci right 6.632336e-01	k: 370717	n:560000
KS ci ratio: 1.323408e-01	ci left: 1.460745e-03	ci right 1.669466e-03	k: 875	n:560000
MAP4K3   560000 perm   271 sec   (2070 perm/sec)   p_kst 1.562500e-03   p_cons 6.619946e-01   p_joint 4.166071e-03

Joint ci ratio: 8.037089e-02	ci left: 3.989055e-03	ci right 4.324788e-03	k: 2368	n:570000
Cons ci ratio: 3.708808e-03	ci left: 6.609178e-01	ci right 6.633753e-01	k: 377424	n:570000
KS ci ratio: 1.313699e-01	ci left: 1.457173e-03	ci right 1.663736e-03	k: 888	n:570000
MAP4K3   570000 perm   278 sec   (2051 perm/sec)   p_kst 1.557895e-03   p_cons 6.621474e-01   p_joint 4.154386e-03

Joint ci ratio: 8.173606e-02	ci left: 3.788505e-03	ci right 4.113033e-03	k: 2290	n:580000
Cons ci ratio: 3.675655e-03	ci left: 6.610553e-01	ci right 6.634913e-01	k: 384119	n:580000
KS ci ratio: 1.299162e-01	ci left: 1.465405e-03	ci right 1.670660e-03	k: 908	n:580000
MAP4K3   580000 perm   285 sec   (2034 perm/sec)   p_kst 1.565517e-03   p_cons 6.622741e-01   p_joint 3.948276e-03

Joint ci ratio: 8.097940e-02	ci left: 3.795692e-03	ci right 4.117683e-03	k: 2333	n:590000
Cons ci ratio: 3.645115e-03	ci left: 6.609746e-01	ci right 6.633899e-01	k: 390688	n:590000
KS ci ratio: 1.281646e-01	ci left: 1.481574e-03	ci right 1.686082e-03	k: 933	n:590000
MAP4K3   590000 perm   293 sec   (2017 perm/sec)   p_kst 1.581356e-03   p_cons 6.621831e-01   p_joint 3.954237e-03

Joint ci ratio: 8.058444e-02	ci left: 3.769987e-03	ci right 4.088165e-03	k: 2356	n:600000
Cons ci ratio: 3.615511e-03	ci left: 6.608732e-01	ci right 6.632686e-01	k: 397243	n:600000
KS ci ratio: 1.270138e-01	ci left: 1.484310e-03	ci right 1.687218e-03	k: 950	n:600000
MAP4K3   600000 perm   300 sec   (2000 perm/sec)   p_kst 1.583333e-03   p_cons 6.620717e-01   p_joint 3.926667e-03

Joint ci ratio: 8.063858e-02	ci left: 3.703360e-03	ci right 4.016135e-03	k: 2353	n:610000
Cons ci ratio: 3.586091e-03	ci left: 6.608409e-01	ci right 6.632166e-01	k: 403838	n:610000
KS ci ratio: 1.264838e-01	ci left: 1.472675e-03	ci right 1.673090e-03	k: 958	n:610000
MAP4K3   610000 perm   308 sec   (1983 perm/sec)   p_kst 1.570492e-03   p_cons 6.620295e-01   p_joint 3.857377e-03

Joint ci ratio: 7.865343e-02	ci left: 3.833333e-03	ci right 4.148749e-03	k: 2473	n:620000
Cons ci ratio: 3.556660e-03	ci left: 6.609001e-01	ci right 6.632565e-01	k: 410489	n:620000
KS ci ratio: 1.249930e-01	ci left: 1.484853e-03	ci right 1.684367e-03	k: 981	n:620000
MAP4K3   620000 perm   315 sec   (1967 perm/sec)   p_kst 1.582258e-03   p_cons 6.620790e-01   p_joint 3.988710e-03

Joint ci ratio: 7.811884e-02	ci left: 3.825396e-03	ci right 4.137923e-03	k: 2507	n:630000
Cons ci ratio: 3.528142e-03	ci left: 6.609321e-01	ci right 6.632696e-01	k: 417124	n:630000
KS ci ratio: 1.241116e-01	ci left: 1.482814e-03	ci right 1.680545e-03	k: 995	n:630000
MAP4K3   630000 perm   323 sec   (1950 perm/sec)   p_kst 1.579365e-03   p_cons 6.621016e-01   p_joint 3.979365e-03

Joint ci ratio: 7.897947e-02	ci left: 3.682896e-03	ci right 3.987248e-03	k: 2453	n:640000
Cons ci ratio: 3.500018e-03	ci left: 6.609991e-01	ci right 6.633182e-01	k: 423782	n:640000
KS ci ratio: 1.231876e-01	ci left: 1.482357e-03	ci right 1.678449e-03	k: 1010	n:640000
MAP4K3   640000 perm   331 sec   (1933 perm/sec)   p_kst 1.578125e-03   p_cons 6.621594e-01   p_joint 3.832812e-03

Joint ci ratio: 7.848574e-02	ci left: 3.672988e-03	ci right 3.974537e-03	k: 2484	n:650000
Cons ci ratio: 3.473343e-03	ci left: 6.609625e-01	ci right 6.632637e-01	k: 430374	n:650000
KS ci ratio: 1.224034e-01	ci left: 1.478937e-03	ci right 1.673241e-03	k: 1023	n:650000
MAP4K3   650000 perm   339 sec   (1917 perm/sec)   p_kst 1.573846e-03   p_cons 6.621138e-01   p_joint 3.821538e-03

Joint ci ratio: 7.790796e-02	ci left: 3.672301e-03	ci right 3.971474e-03	k: 2521	n:660000
Cons ci ratio: 3.447072e-03	ci left: 6.609529e-01	ci right 6.632366e-01	k: 436983	n:660000
KS ci ratio: 1.215753e-01	ci left: 1.477094e-03	ci right 1.669748e-03	k: 1037	n:660000
MAP4K3   660000 perm   347 sec   (1902 perm/sec)   p_kst 1.571212e-03   p_cons 6.620955e-01   p_joint 3.819697e-03

Joint ci ratio: 7.744916e-02	ci left: 3.661396e-03	ci right 3.957845e-03	k: 2551	n:670000
Cons ci ratio: 3.420930e-03	ci left: 6.610033e-01	ci right 6.632699e-01	k: 443632	n:670000
KS ci ratio: 1.210522e-01	ci left: 1.468072e-03	ci right 1.658667e-03	k: 1046	n:670000
MAP4K3   670000 perm   355 sec   (1887 perm/sec)   p_kst 1.561194e-03   p_cons 6.621373e-01   p_joint 3.807463e-03

Joint ci ratio: 7.820861e-02	ci left: 3.536887e-03	ci right 3.826190e-03	k: 2502	n:680000
Cons ci ratio: 3.395699e-03	ci left: 6.610097e-01	ci right 6.632595e-01	k: 450252	n:680000
KS ci ratio: 1.199120e-01	ci left: 1.475009e-03	ci right 1.664572e-03	k: 1066	n:680000
MAP4K3   680000 perm   363 sec   (1872 perm/sec)   p_kst 1.567647e-03   p_cons 6.621353e-01   p_joint 3.679412e-03

Joint ci ratio: 7.337996e-02	ci left: 3.967661e-03	ci right 4.271308e-03	k: 2841	n:690000
Cons ci ratio: 3.372262e-03	ci left: 6.608506e-01	ci right 6.630843e-01	k: 456758	n:690000
KS ci ratio: 1.191331e-01	ci left: 1.473315e-03	ci right 1.661344e-03	k: 1080	n:690000
MAP4K3   690000 perm   371 sec   (1858 perm/sec)   p_kst 1.565217e-03   p_cons 6.619681e-01   p_joint 4.117391e-03

Joint ci ratio: 7.441451e-02	ci left: 3.801598e-03	ci right 4.096816e-03	k: 2763	n:700000
Cons ci ratio: 3.348480e-03	ci left: 6.608061e-01	ci right 6.630239e-01	k: 463341	n:700000
KS ci ratio: 1.186408e-01	ci left: 1.464742e-03	ci right 1.650850e-03	k: 1089	n:700000
MAP4K3   700000 perm   380 sec   (1843 perm/sec)   p_kst 1.555714e-03   p_cons 6.619157e-01   p_joint 3.947143e-03

Joint ci ratio: 7.378939e-02	ci left: 3.813026e-03	ci right 4.106537e-03	k: 2810	n:710000
Cons ci ratio: 3.326554e-03	ci left: 6.605798e-01	ci right 6.627823e-01	k: 469794	n:710000
KS ci ratio: 1.174080e-01	ci left: 1.475550e-03	ci right 1.660949e-03	k: 1112	n:710000
MAP4K3   710000 perm   388 sec   (1830 perm/sec)   p_kst 1.566197e-03   p_cons 6.616817e-01   p_joint 3.957746e-03

Joint ci ratio: 7.324411e-02	ci left: 3.817328e-03	ci right 4.108907e-03	k: 2852	n:720000
Cons ci ratio: 3.303073e-03	ci left: 6.606280e-01	ci right 6.628151e-01	k: 476440	n:720000
KS ci ratio: 1.167284e-01	ci left: 1.472583e-03	ci right 1.656464e-03	k: 1125	n:720000
MAP4K3   720000 perm   396 sec   (1816 perm/sec)   p_kst 1.562500e-03   p_cons 6.617222e-01   p_joint 3.961111e-03

Joint ci ratio: 7.514725e-02	ci left: 3.574107e-03	ci right 3.854511e-03	k: 2710	n:730000
Cons ci ratio: 3.280826e-03	ci left: 6.605736e-01	ci right 6.627457e-01	k: 483012	n:730000
KS ci ratio: 1.163680e-01	ci left: 1.461720e-03	ci right 1.643642e-03	k: 1132	n:730000
MAP4K3   730000 perm   405 sec   (1803 perm/sec)   p_kst 1.550685e-03   p_cons 6.616603e-01   p_joint 3.712329e-03

Joint ci ratio: 7.463964e-02	ci left: 3.574872e-03	ci right 3.853359e-03	k: 2747	n:740000
Cons ci ratio: 3.259552e-03	ci left: 6.604476e-01	ci right 6.626052e-01	k: 489530	n:740000
KS ci ratio: 1.154543e-01	ci left: 1.465586e-03	ci right 1.646460e-03	k: 1150	n:740000
MAP4K3   740000 perm   414 sec   (1789 perm/sec)   p_kst 1.554054e-03   p_cons 6.615270e-01   p_joint 3.712162e-03

Joint ci ratio: 7.419568e-02	ci left: 3.570388e-03	ci right 3.846800e-03	k: 2780	n:750000
Cons ci ratio: 3.237434e-03	ci left: 6.604985e-01	ci right 6.626416e-01	k: 496178	n:750000
KS ci ratio: 1.148080e-01	ci left: 1.462879e-03	ci right 1.642339e-03	k: 1163	n:750000
MAP4K3   750000 perm   422 sec   (1775 perm/sec)   p_kst 1.550667e-03   p_cons 6.615707e-01   p_joint 3.706667e-03

Joint ci ratio: 7.368074e-02	ci left: 3.573777e-03	ci right 3.848449e-03	k: 2819	n:760000
Cons ci ratio: 3.216430e-03	ci left: 6.604546e-01	ci right 6.625836e-01	k: 502755	n:760000
KS ci ratio: 1.138338e-01	ci left: 1.469194e-03	ci right 1.647797e-03	k: 1183	n:760000
MAP4K3   760000 perm   431 sec   (1761 perm/sec)   p_kst 1.556579e-03   p_cons 6.615197e-01   p_joint 3.709211e-03

Joint ci ratio: 7.401253e-02	ci left: 3.495491e-03	ci right 3.765408e-03	k: 2794	n:770000
Cons ci ratio: 3.195329e-03	ci left: 6.604821e-01	ci right 6.625972e-01	k: 509386	n:770000
KS ci ratio: 1.132616e-01	ci left: 1.465256e-03	ci right 1.642424e-03	k: 1195	n:770000
MAP4K3   770000 perm   440 sec   (1749 perm/sec)   p_kst 1.551948e-03   p_cons 6.615403e-01   p_joint 3.628571e-03

Joint ci ratio: 7.412079e-02	ci left: 3.440607e-03	ci right 3.706691e-03	k: 2786	n:780000
Cons ci ratio: 3.174820e-03	ci left: 6.604833e-01	ci right 6.625848e-01	k: 515997	n:780000
KS ci ratio: 1.125580e-01	ci left: 1.465158e-03	ci right 1.641141e-03	k: 1210	n:780000
MAP4K3   780000 perm   450 sec   (1735 perm/sec)   p_kst 1.551282e-03   p_cons 6.615346e-01   p_joint 3.571795e-03

Joint ci ratio: 7.362048e-02	ci left: 3.444268e-03	ci right 3.708760e-03	k: 2824	n:790000
Cons ci ratio: 3.154746e-03	ci left: 6.604781e-01	ci right 6.625663e-01	k: 522603	n:790000
KS ci ratio: 1.118217e-01	ci left: 1.466296e-03	ci right 1.641189e-03	k: 1226	n:790000
MAP4K3   790000 perm   459 sec   (1723 perm/sec)   p_kst 1.551899e-03   p_cons 6.615228e-01   p_joint 3.574684e-03

Joint ci ratio: 7.061252e-02	ci left: 3.701961e-03	ci right 3.974151e-03	k: 3069	n:800000
Cons ci ratio: 3.135433e-03	ci left: 6.604181e-01	ci right 6.624932e-01	k: 529165	n:800000
KS ci ratio: 1.113241e-01	ci left: 1.461334e-03	ci right 1.634808e-03	k: 1237	n:800000
MAP4K3   800000 perm   468 sec   (1709 perm/sec)   p_kst 1.546250e-03   p_cons 6.614562e-01   p_joint 3.836250e-03

Joint ci ratio: 7.108053e-02	ci left: 3.607743e-03	ci right 3.874837e-03	k: 3029	n:810000
Cons ci ratio: 3.116916e-03	ci left: 6.602953e-01	ci right 6.623578e-01	k: 535675	n:810000
KS ci ratio: 1.109221e-01	ci left: 1.454095e-03	ci right 1.626045e-03	k: 1246	n:810000
MAP4K3   810000 perm   477 sec   (1697 perm/sec)   p_kst 1.538272e-03   p_cons 6.613272e-01   p_joint 3.739506e-03

Joint ci ratio: 7.071996e-02	ci left: 3.600881e-03	ci right 3.866059e-03	k: 3060	n:820000
Cons ci ratio: 3.097964e-03	ci left: 6.602855e-01	ci right 6.623354e-01	k: 542275	n:820000
KS ci ratio: 1.102172e-01	ci left: 1.455334e-03	ci right 1.626267e-03	k: 1262	n:820000
MAP4K3   820000 perm   487 sec   (1685 perm/sec)   p_kst 1.539024e-03   p_cons 6.613110e-01   p_joint 3.731707e-03

Joint ci ratio: 8.547389e-02	ci left: 2.419644e-03	ci right 2.636863e-03	k: 2097	n:830000
Cons ci ratio: 3.079967e-03	ci left: 6.601866e-01	ci right 6.622243e-01	k: 548801	n:830000
KS ci ratio: 1.141798e-01	ci left: 1.337088e-03	ci right 1.500158e-03	k: 1176	n:830000
MAP4K3   830000 perm   496 sec   (1674 perm/sec)   p_kst 1.416867e-03   p_cons 6.612060e-01   p_joint 2.526506e-03

Joint ci ratio: 8.559798e-02	ci left: 2.383847e-03	ci right 2.598178e-03	k: 2091	n:840000
Cons ci ratio: 3.061522e-03	ci left: 6.602010e-01	ci right 6.622265e-01	k: 555420	n:840000
KS ci ratio: 1.136981e-01	ci left: 1.332736e-03	ci right 1.494544e-03	k: 1186	n:840000
MAP4K3   840000 perm   505 sec   (1662 perm/sec)   p_kst 1.411905e-03   p_cons 6.612143e-01   p_joint 2.489286e-03

Joint ci ratio: 8.595003e-02	ci left: 2.336228e-03	ci right 2.547186e-03	k: 2074	n:850000
Cons ci ratio: 3.043605e-03	ci left: 6.601856e-01	ci right 6.621992e-01	k: 562014	n:850000
KS ci ratio: 1.130807e-01	ci left: 1.331917e-03	ci right 1.492688e-03	k: 1199	n:850000
MAP4K3   850000 perm   515 sec   (1651 perm/sec)   p_kst 1.410588e-03   p_cons 6.611929e-01   p_joint 2.440000e-03

Joint ci ratio: 8.531477e-02	ci left: 2.344338e-03	ci right 2.554385e-03	k: 2105	n:860000
Cons ci ratio: 3.025771e-03	ci left: 6.602044e-01	ci right 6.622062e-01	k: 568637	n:860000
KS ci ratio: 1.122417e-01	ci left: 1.336770e-03	ci right 1.496851e-03	k: 1217	n:860000
MAP4K3   860000 perm   525 sec   (1639 perm/sec)   p_kst 1.415116e-03   p_cons 6.612058e-01   p_joint 2.447674e-03

Joint ci ratio: 8.489274e-02	ci left: 2.341015e-03	ci right 2.549676e-03	k: 2126	n:870000
Cons ci ratio: 3.008633e-03	ci left: 6.601652e-01	ci right 6.621555e-01	k: 575210	n:870000
KS ci ratio: 1.116022e-01	ci left: 1.337046e-03	ci right 1.496188e-03	k: 1231	n:870000
MAP4K3   870000 perm   534 sec   (1628 perm/sec)   p_kst 1.414943e-03   p_cons 6.611609e-01   p_joint 2.443678e-03

Joint ci ratio: 8.430005e-02	ci left: 2.347783e-03	ci right 2.555514e-03	k: 2156	n:880000
Cons ci ratio: 2.992321e-03	ci left: 6.600463e-01	ci right 6.620254e-01	k: 581712	n:880000
KS ci ratio: 1.108844e-01	ci left: 1.339528e-03	ci right 1.497873e-03	k: 1247	n:880000
MAP4K3   880000 perm   544 sec   (1617 perm/sec)   p_kst 1.417045e-03   p_cons 6.610364e-01   p_joint 2.450000e-03

Joint ci ratio: 8.387353e-02	ci left: 2.345602e-03	ci right 2.552039e-03	k: 2178	n:890000
Cons ci ratio: 2.975764e-03	ci left: 6.600065e-01	ci right 6.619745e-01	k: 588282	n:890000
KS ci ratio: 1.103991e-01	ci left: 1.336495e-03	ci right 1.493745e-03	k: 1258	n:890000
MAP4K3   890000 perm   554 sec   (1607 perm/sec)   p_kst 1.413483e-03   p_cons 6.609910e-01   p_joint 2.447191e-03

Joint ci ratio: 8.318861e-02	ci left: 2.358705e-03	ci right 2.564518e-03	k: 2214	n:900000
Cons ci ratio: 2.958254e-03	ci left: 6.601533e-01	ci right 6.621101e-01	k: 595019	n:900000
KS ci ratio: 1.094893e-01	ci left: 1.344337e-03	ci right 1.501122e-03	k: 1279	n:900000
MAP4K3   900000 perm   564 sec   (1596 perm/sec)   p_kst 1.421111e-03   p_cons 6.611322e-01   p_joint 2.460000e-03

Joint ci ratio: 8.300213e-02	ci left: 2.343545e-03	ci right 2.547554e-03	k: 2224	n:910000
Cons ci ratio: 2.942224e-03	ci left: 6.601176e-01	ci right 6.620638e-01	k: 601593	n:910000
KS ci ratio: 1.090644e-01	ci left: 1.340253e-03	ci right 1.495916e-03	k: 1289	n:910000
MAP4K3   910000 perm   574 sec   (1585 perm/sec)   p_kst 1.416484e-03   p_cons 6.610912e-01   p_joint 2.443956e-03

Joint ci ratio: 8.330402e-02	ci left: 2.301040e-03	ci right 2.502113e-03	k: 2208	n:920000
Cons ci ratio: 2.926516e-03	ci left: 6.600730e-01	ci right 6.620086e-01	k: 608158	n:920000
KS ci ratio: 1.084773e-01	ci left: 1.340488e-03	ci right 1.495287e-03	k: 1303	n:920000
MAP4K3   920000 perm   584 sec   (1574 perm/sec)   p_kst 1.416304e-03   p_cons 6.610413e-01   p_joint 2.400000e-03

Joint ci ratio: 8.291099e-02	ci left: 2.298409e-03	ci right 2.498259e-03	k: 2229	n:930000
Cons ci ratio: 2.910686e-03	ci left: 6.600864e-01	ci right 6.620115e-01	k: 614776	n:930000
KS ci ratio: 1.078997e-01	ci left: 1.340721e-03	ci right 1.494670e-03	k: 1317	n:930000
MAP4K3   930000 perm   595 sec   (1564 perm/sec)   p_kst 1.416129e-03   p_cons 6.610495e-01   p_joint 2.396774e-03

Joint ci ratio: 8.652612e-02	ci left: 2.084431e-03	ci right 2.273977e-03	k: 2047	n:940000
Cons ci ratio: 2.894623e-03	ci left: 6.601751e-01	ci right 6.620899e-01	k: 621465	n:940000
KS ci ratio: 1.073312e-01	ci left: 1.340950e-03	ci right 1.494063e-03	k: 1331	n:940000
MAP4K3   940000 perm   605 sec   (1554 perm/sec)   p_kst 1.415957e-03   p_cons 6.611330e-01   p_joint 2.177660e-03

Joint ci ratio: 8.619036e-02	ci left: 2.078968e-03	ci right 2.267246e-03	k: 2063	n:950000
Cons ci ratio: 2.878971e-03	ci left: 6.602388e-01	ci right 6.621434e-01	k: 628132	n:950000
KS ci ratio: 1.068909e-01	ci left: 1.338104e-03	ci right 1.490225e-03	k: 1342	n:950000
MAP4K3   950000 perm   615 sec   (1544 perm/sec)   p_kst 1.412632e-03   p_cons 6.611916e-01   p_joint 2.171579e-03

Joint ci ratio: 8.585848e-02	ci left: 2.073620e-03	ci right 2.260654e-03	k: 2079	n:960000
Cons ci ratio: 2.863797e-03	ci left: 6.602658e-01	ci right 6.621603e-01	k: 634765	n:960000
KS ci ratio: 1.064954e-01	ci left: 1.334304e-03	ci right 1.485397e-03	k: 1352	n:960000
MAP4K3   960000 perm   626 sec   (1534 perm/sec)   p_kst 1.408333e-03   p_cons 6.612135e-01   p_joint 2.165625e-03

Joint ci ratio: 8.544872e-02	ci left: 2.072419e-03	ci right 2.258409e-03	k: 2099	n:970000
Cons ci ratio: 2.848683e-03	ci left: 6.603200e-01	ci right 6.622048e-01	k: 641425	n:970000
KS ci ratio: 1.059486e-01	ci left: 1.334598e-03	ci right 1.484900e-03	k: 1366	n:970000
MAP4K3   970000 perm   636 sec   (1524 perm/sec)   p_kst 1.408247e-03   p_cons 6.612629e-01   p_joint 2.163918e-03

Joint ci ratio: 8.502469e-02	ci left: 2.072244e-03	ci right 2.257249e-03	k: 2120	n:980000
Cons ci ratio: 2.834355e-03	ci left: 6.602864e-01	ci right 6.621616e-01	k: 648000	n:980000
KS ci ratio: 1.054102e-01	ci left: 1.334887e-03	ci right 1.484411e-03	k: 1380	n:980000
MAP4K3   980000 perm   647 sec   (1515 perm/sec)   p_kst 1.408163e-03   p_cons 6.612245e-01   p_joint 2.163265e-03

Joint ci ratio: 8.532853e-02	ci left: 2.036482e-03	ci right 2.218976e-03	k: 2105	n:990000
Cons ci ratio: 2.820279e-03	ci left: 6.602475e-01	ci right 6.621132e-01	k: 654569	n:990000
KS ci ratio: 1.049553e-01	ci left: 1.333206e-03	ci right 1.481857e-03	k: 1392	n:990000
MAP4K3   990000 perm   658 sec   (1505 perm/sec)   p_kst 1.406061e-03   p_cons 6.611808e-01   p_joint 2.126263e-03

Joint ci ratio: 8.502653e-02	ci left: 2.030797e-03	ci right 2.212106e-03	k: 2120	n:1000000
Cons ci ratio: 2.805771e-03	ci left: 6.603114e-01	ci right 6.621677e-01	k: 661240	n:1000000
KS ci ratio: 1.045435e-01	ci left: 1.330586e-03	ci right 1.478327e-03	k: 1403	n:1000000
MAP4K3   1000000 perm   669 sec   (1495 perm/sec)   p_kst 1.403000e-03   p_cons 6.612400e-01   p_joint 2.120000e-03

Joint ci ratio: 8.318098e-02	ci left: 2.102775e-03	ci right 2.286237e-03	k: 2215	n:1010000
Cons ci ratio: 2.791639e-03	ci left: 6.603493e-01	ci right 6.621963e-01	k: 667886	n:1010000
KS ci ratio: 1.040997e-01	ci left: 1.328983e-03	ci right 1.475881e-03	k: 1415	n:1010000
MAP4K3   1010000 perm   680 sec   (1485 perm/sec)   p_kst 1.400990e-03   p_cons 6.612733e-01   p_joint 2.193069e-03

Joint ci ratio: 8.275260e-02	ci left: 2.104240e-03	ci right 2.286840e-03	k: 2238	n:1020000
Cons ci ratio: 2.777816e-03	ci left: 6.603708e-01	ci right 6.622087e-01	k: 674516	n:1020000
KS ci ratio: 1.036979e-01	ci left: 1.326457e-03	ci right 1.472476e-03	k: 1426	n:1020000
MAP4K3   1020000 perm   691 sec   (1476 perm/sec)   p_kst 1.398039e-03   p_cons 6.612902e-01   p_joint 2.194118e-03

Joint ci ratio: 7.470607e-02	ci left: 2.566400e-03	ci right 2.766510e-03	k: 2745	n:1030000
Cons ci ratio: 2.764538e-03	ci left: 6.603365e-01	ci right 6.621655e-01	k: 681089	n:1030000
KS ci ratio: 1.030855e-01	ci left: 1.329657e-03	ci right 1.475111e-03	k: 1443	n:1030000
MAP4K3   1030000 perm   702 sec   (1467 perm/sec)   p_kst 1.400971e-03   p_cons 6.612515e-01   p_joint 2.665049e-03

Joint ci ratio: 7.443573e-02	ci left: 2.560595e-03	ci right 2.759499e-03	k: 2765	n:1040000
Cons ci ratio: 2.751029e-03	ci left: 6.603712e-01	ci right 6.621913e-01	k: 687733	n:1040000
KS ci ratio: 1.026599e-01	ci left: 1.328114e-03	ci right 1.472763e-03	k: 1455	n:1040000
MAP4K3   1040000 perm   713 sec   (1458 perm/sec)   p_kst 1.399038e-03   p_cons 6.612817e-01   p_joint 2.658654e-03

Joint ci ratio: 7.580923e-02	ci left: 2.443688e-03	ci right 2.637168e-03	k: 2666	n:1050000
Cons ci ratio: 2.738123e-03	ci left: 6.603386e-01	ci right 6.621501e-01	k: 694307	n:1050000
KS ci ratio: 1.019617e-01	ci left: 1.334025e-03	ci right 1.478271e-03	k: 1475	n:1050000
MAP4K3   1050000 perm   725 sec   (1449 perm/sec)   p_kst 1.404762e-03   p_cons 6.612448e-01   p_joint 2.539048e-03

Joint ci ratio: 7.572480e-02	ci left: 2.426187e-03	ci right 2.618057e-03	k: 2672	n:1060000
Cons ci ratio: 2.724743e-03	ci left: 6.604142e-01	ci right 6.622170e-01	k: 700995	n:1060000
KS ci ratio: 1.015499e-01	ci left: 1.332473e-03	ci right 1.475934e-03	k: 1487	n:1060000
MAP4K3   1060000 perm   736 sec   (1440 perm/sec)   p_kst 1.402830e-03   p_cons 6.613160e-01   p_joint 2.520755e-03

Joint ci ratio: 7.630016e-02	ci left: 2.366837e-03	ci right 2.555499e-03	k: 2632	n:1070000
Cons ci ratio: 2.712282e-03	ci left: 6.603687e-01	ci right 6.621631e-01	k: 707555	n:1070000
KS ci ratio: 1.014141e-01	ci left: 1.323663e-03	ci right 1.465974e-03	k: 1491	n:1070000
MAP4K3   1070000 perm   748 sec   (1431 perm/sec)   p_kst 1.393458e-03   p_cons 6.612664e-01   p_joint 2.459813e-03

Joint ci ratio: 7.615619e-02	ci left: 2.354004e-03	ci right 2.541273e-03	k: 2642	n:1080000
Cons ci ratio: 2.699549e-03	ci left: 6.603973e-01	ci right 6.621833e-01	k: 714194	n:1080000
KS ci ratio: 1.009416e-01	ci left: 1.324042e-03	ci right 1.465691e-03	k: 1505	n:1080000
MAP4K3   1080000 perm   759 sec   (1423 perm/sec)   p_kst 1.393519e-03   p_cons 6.612907e-01   p_joint 2.446296e-03

Joint ci ratio: 7.577007e-02	ci left: 2.356707e-03	ci right 2.543200e-03	k: 2669	n:1090000
Cons ci ratio: 2.686751e-03	ci left: 6.604657e-01	ci right 6.622435e-01	k: 720877	n:1090000
KS ci ratio: 1.004757e-01	ci left: 1.324415e-03	ci right 1.465412e-03	k: 1519	n:1090000
MAP4K3   1090000 perm   771 sec   (1414 perm/sec)   p_kst 1.393578e-03   p_cons 6.613550e-01   p_joint 2.448624e-03

Joint ci ratio: 7.551617e-02	ci left: 2.351337e-03	ci right 2.536753e-03	k: 2687	n:1100000
Cons ci ratio: 2.674400e-03	ci left: 6.604884e-01	ci right 6.622580e-01	k: 727511	n:1100000
KS ci ratio: 1.001470e-01	ci left: 1.321238e-03	ci right 1.461409e-03	k: 1529	n:1100000
MAP4K3   1100000 perm   783 sec   (1405 perm/sec)   p_kst 1.390000e-03   p_cons 6.613736e-01   p_joint 2.442727e-03

Joint ci ratio: 7.570073e-02	ci left: 2.318662e-03	ci right 2.501968e-03	k: 2674	n:1110000
Cons ci ratio: 2.662490e-03	ci left: 6.604647e-01	ci right 6.622264e-01	k: 734094	n:1110000
KS ci ratio: 9.978905e-02	ci left: 1.318997e-03	ci right 1.458401e-03	k: 1540	n:1110000
MAP4K3   1110000 perm   795 sec   (1397 perm/sec)   p_kst 1.387387e-03   p_cons 6.613459e-01   p_joint 2.409009e-03

Outputting figure to mutsig2_images.part000000000102/MAP4K3.5_2821_1110000_0.0013874_0.66135_0.002409.png
                gene_name: MAP4K3
               theta_stop: 0.100 
                    nperm: 1110000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 36 percent done.
MAPK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
MAPK10   10000 perm   2 sec   (5515 perm/sec)   p_kst 3.776000e-01   p_cons 7.897000e-01   p_joint 6.254000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK10.5_1448_10000_0.3776_0.7897_0.6254.png
                gene_name: MAPK10
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 38 percent done.
MAPK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MAPK7   10000 perm   2 sec   (5309 perm/sec)   p_kst 1   p_cons 6.584000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK7.5_2475_10000_1_0.6584_1.png
                gene_name: MAPK7
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
MAPKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
MAPKAP1   10000 perm   2 sec   (6044 perm/sec)   p_kst 1.027000e-01   p_cons 7.087000e-01   p_joint 2.679000e-01

Joint ci ratio: 4.327639e-02	ci left: 2.845616e-01	ci right 2.971992e-01	k: 5817	n:20000
Cons ci ratio: 1.771887e-02	ci left: 7.035555e-01	ci right 7.161835e-01	k: 14198	n:20000
KS ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
MAPKAP1   20000 perm   4 sec   (5303 perm/sec)   p_kst 1.009500e-01   p_cons 7.099000e-01   p_joint 2.908500e-01

Outputting figure to mutsig2_images.part000000000102/MAPKAP1.5_1631_20000_0.10095_0.7099_0.29085.png
                gene_name: MAPKAP1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 41 percent done.
MARCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MARCH4   10000 perm   2 sec   (6106 perm/sec)   p_kst 1   p_cons 1.416000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH4.5_1249_10000_1_0.1416_0.4518.png
                gene_name: MARCH4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 43 percent done.
MARK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
KS ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
MARK3   10000 perm   2 sec   (5382 perm/sec)   p_kst 7.829000e-01   p_cons 6.497000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARK3.5_2334_10000_0.7829_0.6497_1.png
                gene_name: MARK3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
MAS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
KS ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
MAS1L   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.686000e-01   p_cons 5.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAS1L.5_1139_10000_0.7686_0.5262_1.png
                gene_name: MAS1L
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
MASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
MASP1   10000 perm   2 sec   (5334 perm/sec)   p_kst 6.135000e-01   p_cons 1.582000e-01   p_joint 4.447000e-01

Outputting figure to mutsig2_images.part000000000102/MASP1.5_3109_10000_0.6135_0.1582_0.4447.png
                gene_name: MASP1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 48 percent done.
MAST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
Cons ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
KS ci ratio: 3.289737e-02	ci left: 5.769745e-01	ci right 5.963749e-01	k: 5867	n:10000
MAST2   10000 perm   3 sec   (3932 perm/sec)   p_kst 5.867000e-01   p_cons 4.366000e-01   p_joint 7.802000e-01

Outputting figure to mutsig2_images.part000000000102/MAST2.5_5513_10000_0.5867_0.4366_0.7802.png
                gene_name: MAST2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 49 percent done.
MAST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
Cons ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
KS ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
MAST3   10000 perm   2 sec   (4593 perm/sec)   p_kst 2.175000e-01   p_cons 8.006000e-01   p_joint 3.272000e-01

Outputting figure to mutsig2_images.part000000000102/MAST3.5_4038_10000_0.2175_0.8006_0.3272.png
                gene_name: MAST3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 51 percent done.
MAP3K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
Cons ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
KS ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
MAP3K15   10000 perm   2 sec   (4678 perm/sec)   p_kst 7.480000e-02   p_cons 3.981000e-01   p_joint 9.740000e-02

Joint ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
Cons ci ratio: 3.377232e-02	ci left: 3.956432e-01	ci right 4.092851e-01	k: 8049	n:20000
KS ci ratio: 9.513196e-02	ci left: 7.451555e-02	ci right 8.200761e-02	k: 1564	n:20000
MAP3K15   20000 perm   5 sec   (4193 perm/sec)   p_kst 7.820000e-02   p_cons 4.024500e-01   p_joint 1.144500e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K15.4_4058_20000_0.0782_0.40245_0.11445.png
                gene_name: MAP3K15
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 52 percent done.
MAP3K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
KS ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
MAP3K3   10000 perm   2 sec   (4833 perm/sec)   p_kst 3.740000e-02   p_cons 7.600000e-03   p_joint 1.240000e-02

Joint ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
Cons ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
KS ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
MAP3K3   20000 perm   4 sec   (4606 perm/sec)   p_kst 3.830000e-02   p_cons 7.050000e-03   p_joint 1.765000e-02

Joint ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
Cons ci ratio: 2.580461e-01	ci left: 6.648515e-03	ci right 8.648608e-03	k: 228	n:30000
KS ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
MAP3K3   30000 perm   7 sec   (4486 perm/sec)   p_kst 3.780000e-02   p_cons 7.600000e-03   p_joint 2.553333e-02

Joint ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
Cons ci ratio: 2.228633e-01	ci left: 6.819546e-03	ci right 8.553075e-03	k: 306	n:40000
KS ci ratio: 9.868338e-02	ci left: 3.607420e-02	ci right 3.984326e-02	k: 1517	n:40000
MAP3K3   40000 perm   9 sec   (4349 perm/sec)   p_kst 3.792500e-02   p_cons 7.650000e-03   p_joint 1.927500e-02

Joint ci ratio: 1.279013e-01	ci left: 1.725941e-02	ci right 1.963697e-02	k: 921	n:50000
Cons ci ratio: 2.027578e-01	ci left: 6.667492e-03	ci right 8.190535e-03	k: 370	n:50000
KS ci ratio: 8.656060e-02	ci left: 3.769197e-02	ci right 4.112176e-02	k: 1969	n:50000
MAP3K3   50000 perm   12 sec   (4270 perm/sec)   p_kst 3.938000e-02   p_cons 7.400000e-03   p_joint 1.842000e-02

Joint ci ratio: 1.312452e-01	ci left: 1.368771e-02	ci right 1.562632e-02	k: 878	n:60000
Cons ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
KS ci ratio: 7.836539e-02	ci left: 3.846233e-02	ci right 4.161569e-02	k: 2401	n:60000
MAP3K3   60000 perm   14 sec   (4182 perm/sec)   p_kst 4.001667e-02   p_cons 6.950000e-03   p_joint 1.463333e-02

Joint ci ratio: 1.318411e-01	ci left: 1.164861e-02	ci right 1.330646e-02	k: 872	n:70000
Cons ci ratio: 1.755656e-01	ci left: 6.450383e-03	ci right 7.705285e-03	k: 494	n:70000
KS ci ratio: 7.325408e-02	ci left: 3.785852e-02	ci right 4.075126e-02	k: 2750	n:70000
MAP3K3   70000 perm   17 sec   (4109 perm/sec)   p_kst 3.928571e-02   p_cons 7.057143e-03   p_joint 1.245714e-02

Joint ci ratio: 1.248372e-01	ci left: 1.141443e-02	ci right 1.294625e-02	k: 973	n:80000
Cons ci ratio: 1.636037e-01	ci left: 6.541857e-03	ci right 7.719311e-03	k: 569	n:80000
KS ci ratio: 6.831966e-02	ci left: 3.817303e-02	ci right 4.088550e-02	k: 3161	n:80000
MAP3K3   80000 perm   20 sec   (4042 perm/sec)   p_kst 3.951250e-02   p_cons 7.112500e-03   p_joint 1.216250e-02

Joint ci ratio: 1.511046e-01	ci left: 6.861136e-03	ci right 7.993182e-03	k: 667	n:90000
Cons ci ratio: 1.528431e-01	ci left: 6.700766e-03	ci right 7.820235e-03	k: 652	n:90000
KS ci ratio: 6.452820e-02	ci left: 3.811643e-02	ci right 4.066892e-02	k: 3544	n:90000
MAP3K3   90000 perm   23 sec   (3976 perm/sec)   p_kst 3.937778e-02   p_cons 7.244444e-03   p_joint 7.411111e-03

Joint ci ratio: 1.555588e-01	ci left: 5.818968e-03	ci right 6.809994e-03	k: 630	n:100000
Cons ci ratio: 1.456641e-01	ci left: 6.666040e-03	ci right 7.722846e-03	k: 718	n:100000
KS ci ratio: 6.102269e-02	ci left: 3.841937e-02	ci right 4.084743e-02	k: 3962	n:100000
MAP3K3   100000 perm   26 sec   (3844 perm/sec)   p_kst 3.962000e-02   p_cons 7.180000e-03   p_joint 6.300000e-03

Joint ci ratio: 1.151400e-01	ci left: 9.826541e-03	ci right 1.103584e-02	k: 1146	n:110000
Cons ci ratio: 1.398594e-01	ci left: 6.594761e-03	ci right 7.595128e-03	k: 779	n:110000
KS ci ratio: 5.808790e-02	ci left: 3.859857e-02	ci right 4.091668e-02	k: 4372	n:110000
MAP3K3   110000 perm   29 sec   (3764 perm/sec)   p_kst 3.974545e-02   p_cons 7.081818e-03   p_joint 1.041818e-02

Joint ci ratio: 1.097198e-01	ci left: 9.947186e-03	ci right 1.110998e-02	k: 1262	n:120000
Cons ci ratio: 1.328796e-01	ci left: 6.721355e-03	ci right 7.686024e-03	k: 863	n:120000
KS ci ratio: 5.555764e-02	ci left: 3.872557e-02	ci right 4.094674e-02	k: 4779	n:120000
MAP3K3   120000 perm   32 sec   (3709 perm/sec)   p_kst 3.982500e-02   p_cons 7.191667e-03   p_joint 1.051667e-02

Joint ci ratio: 1.136934e-01	ci left: 8.546080e-03	ci right 9.583689e-03	k: 1177	n:130000
Cons ci ratio: 1.265814e-01	ci left: 6.859321e-03	ci right 7.793627e-03	k: 951	n:130000
KS ci ratio: 5.322482e-02	ci left: 3.898676e-02	ci right 4.112612e-02	k: 5206	n:130000
MAP3K3   130000 perm   36 sec   (3658 perm/sec)   p_kst 4.004615e-02   p_cons 7.315385e-03   p_joint 9.053846e-03

Joint ci ratio: 1.166101e-01	ci left: 7.539998e-03	ci right 8.480551e-03	k: 1120	n:140000
Cons ci ratio: 1.209841e-01	ci left: 6.992355e-03	ci right 7.899653e-03	k: 1041	n:140000
KS ci ratio: 5.136769e-02	ci left: 3.890894e-02	ci right 4.096731e-02	k: 5590	n:140000
MAP3K3   140000 perm   39 sec   (3608 perm/sec)   p_kst 3.992857e-02   p_cons 7.435714e-03   p_joint 8.000000e-03

Joint ci ratio: 1.160691e-01	ci left: 7.108438e-03	ci right 7.990757e-03	k: 1131	n:150000
Cons ci ratio: 1.173288e-01	ci left: 6.953076e-03	ci right 7.826128e-03	k: 1107	n:150000
KS ci ratio: 4.952850e-02	ci left: 3.909294e-02	ci right 4.108488e-02	k: 6012	n:150000
MAP3K3   150000 perm   42 sec   (3557 perm/sec)   p_kst 4.008000e-02   p_cons 7.380000e-03   p_joint 7.540000e-03

Joint ci ratio: 9.895549e-02	ci left: 9.231633e-03	ci right 1.019876e-02	k: 1553	n:160000
Cons ci ratio: 1.131157e-01	ci left: 7.028395e-03	ci right 7.877099e-03	k: 1191	n:160000
KS ci ratio: 4.790470e-02	ci left: 3.920567e-02	ci right 4.113604e-02	k: 6426	n:160000
MAP3K3   160000 perm   46 sec   (3507 perm/sec)   p_kst 4.016250e-02   p_cons 7.443750e-03   p_joint 9.706250e-03

Joint ci ratio: 9.698821e-02	ci left: 9.055802e-03	ci right 9.984570e-03	k: 1617	n:170000
Cons ci ratio: 1.092829e-01	ci left: 7.101070e-03	ci right 7.927623e-03	k: 1276	n:170000
KS ci ratio: 4.639901e-02	ci left: 3.935842e-02	ci right 4.123377e-02	k: 6849	n:170000
MAP3K3   170000 perm   49 sec   (3458 perm/sec)   p_kst 4.028824e-02   p_cons 7.505882e-03   p_joint 9.511765e-03

Joint ci ratio: 8.582991e-02	ci left: 1.096361e-02	ci right 1.195222e-02	k: 2061	n:180000
Cons ci ratio: 1.062481e-01	ci left: 7.106597e-03	ci right 7.909387e-03	k: 1350	n:180000
KS ci ratio: 4.500756e-02	ci left: 3.952801e-02	ci right 4.135350e-02	k: 7278	n:180000
MAP3K3   180000 perm   53 sec   (3403 perm/sec)   p_kst 4.043333e-02   p_cons 7.500000e-03   p_joint 1.145000e-02

Joint ci ratio: 8.759030e-02	ci left: 9.974434e-03	ci right 1.089323e-02	k: 1981	n:190000
Cons ci ratio: 1.034895e-01	ci left: 7.106699e-03	ci right 7.887388e-03	k: 1423	n:190000
KS ci ratio: 4.379048e-02	ci left: 3.958155e-02	ci right 4.135882e-02	k: 7688	n:190000
MAP3K3   190000 perm   57 sec   (3356 perm/sec)   p_kst 4.046316e-02   p_cons 7.489474e-03   p_joint 1.042632e-02

Joint ci ratio: 7.616850e-02	ci left: 1.257191e-02	ci right 1.357228e-02	k: 2613	n:200000
Cons ci ratio: 1.010032e-01	ci left: 7.097284e-03	ci right 7.857096e-03	k: 1494	n:200000
KS ci ratio: 4.287719e-02	ci left: 3.925423e-02	ci right 4.097913e-02	k: 8022	n:200000
MAP3K3   200000 perm   60 sec   (3309 perm/sec)   p_kst 4.011000e-02   p_cons 7.470000e-03   p_joint 1.306500e-02

Joint ci ratio: 7.505234e-02	ci left: 1.234227e-02	ci right 1.330934e-02	k: 2692	n:210000
Cons ci ratio: 9.884699e-02	ci left: 7.065744e-03	ci right 7.805093e-03	k: 1560	n:210000
KS ci ratio: 4.184942e-02	ci left: 3.926485e-02	ci right 4.094787e-02	k: 8421	n:210000
MAP3K3   210000 perm   64 sec   (3263 perm/sec)   p_kst 4.010000e-02   p_cons 7.428571e-03   p_joint 1.281905e-02

Outputting figure to mutsig2_images.part000000000102/MAP3K3.4_2042_210000_0.0401_0.0074286_0.012819.png
                gene_name: MAP3K3
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 54 percent done.
MAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
Cons ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
KS ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
MAP4   10000 perm   2 sec   (4111 perm/sec)   p_kst 4.430000e-01   p_cons 6.752000e-01   p_joint 6.110000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4.4_4902_10000_0.443_0.6752_0.611.png
                gene_name: MAP4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 56 percent done.
MAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
Cons ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
KS ci ratio: 2.106725e-02	ci left: 7.675975e-01	ci right 7.840416e-01	k: 7759	n:10000
MAP9   10000 perm   2 sec   (5352 perm/sec)   p_kst 7.759000e-01   p_cons 3.777000e-01   p_joint 7.287000e-01

Outputting figure to mutsig2_images.part000000000102/MAP9.4_1996_10000_0.7759_0.3777_0.7287.png
                gene_name: MAP9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 57 percent done.
MAPK8IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
MAPK8IP1   10000 perm   2 sec   (5538 perm/sec)   p_kst 2.074000e-01   p_cons 1.022000e-01   p_joint 1.670000e-01

Joint ci ratio: 6.691658e-02	ci left: 1.415274e-01	ci right 1.513756e-01	k: 2928	n:20000
Cons ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
KS ci ratio: 5.482889e-02	ci left: 1.979387e-01	ci right 2.091476e-01	k: 4070	n:20000
MAPK8IP1   20000 perm   4 sec   (4819 perm/sec)   p_kst 2.035000e-01   p_cons 9.915000e-02   p_joint 1.464000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8IP1.4_2184_20000_0.2035_0.09915_0.1464.png
                gene_name: MAPK8IP1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
MAPK8IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
MAPK8IP3   10000 perm   2 sec   (4817 perm/sec)   p_kst 3.996000e-01   p_cons 3.160000e-02   p_joint 1.388000e-01

Joint ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 3.410101e-02	ci left: 3.910070e-01	ci right 4.046227e-01	k: 7956	n:20000
MAPK8IP3   20000 perm   5 sec   (4308 perm/sec)   p_kst 3.978000e-01   p_cons 3.070000e-02   p_joint 9.175000e-02

Joint ci ratio: 5.875547e-02	ci left: 1.253909e-01	ci right 1.330144e-01	k: 3875	n:30000
Cons ci ratio: 1.263217e-01	ci left: 2.913224e-02	ci right 3.309259e-02	k: 932	n:30000
KS ci ratio: 2.767452e-02	ci left: 3.951812e-01	ci right 4.063047e-01	k: 12022	n:30000
MAPK8IP3   30000 perm   7 sec   (4081 perm/sec)   p_kst 4.007333e-01   p_cons 3.106667e-02   p_joint 1.291667e-01

Joint ci ratio: 5.863668e-02	ci left: 9.754543e-02	ci right 1.034627e-01	k: 4019	n:40000
Cons ci ratio: 1.099467e-01	ci left: 2.910413e-02	ci right 3.251444e-02	k: 1231	n:40000
KS ci ratio: 2.407149e-02	ci left: 3.938468e-01	ci right 4.034679e-01	k: 15946	n:40000
MAPK8IP3   40000 perm   10 sec   (3942 perm/sec)   p_kst 3.986500e-01   p_cons 3.077500e-02   p_joint 1.004750e-01

Joint ci ratio: 6.233257e-02	ci left: 7.101064e-02	ci right 7.559905e-02	k: 3664	n:50000
Cons ci ratio: 9.837254e-02	ci left: 2.926383e-02	ci right 3.231097e-02	k: 1538	n:50000
KS ci ratio: 2.163177e-02	ci left: 3.921086e-01	ci right 4.007034e-01	k: 19820	n:50000
MAPK8IP3   50000 perm   13 sec   (3857 perm/sec)   p_kst 3.964000e-01   p_cons 3.076000e-02   p_joint 7.328000e-02

Outputting figure to mutsig2_images.part000000000102/MAPK8IP3.4_4155_50000_0.3964_0.03076_0.07328.png
                gene_name: MAPK8IP3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 61 percent done.
MAPKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
Cons ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
MAPKBP1   10000 perm   2 sec   (4298 perm/sec)   p_kst 8.870000e-02   p_cons 6.098000e-01   p_joint 1.705000e-01

Joint ci ratio: 6.048682e-02	ci left: 1.682746e-01	ci right 1.788205e-01	k: 3470	n:20000
Cons ci ratio: 2.299568e-02	ci left: 5.854516e-01	ci right 5.991216e-01	k: 11846	n:20000
KS ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
MAPKBP1   20000 perm   5 sec   (3820 perm/sec)   p_kst 8.630000e-02   p_cons 5.923000e-01   p_joint 1.735000e-01

Outputting figure to mutsig2_images.part000000000102/MAPKBP1.4_4669_20000_0.0863_0.5923_0.1735.png
                gene_name: MAPKBP1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
MARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
MARK2   10000 perm   2 sec   (5123 perm/sec)   p_kst 1.460000e-02   p_cons 1.012000e-01   p_joint 9.500000e-03

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
KS ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
MARK2   20000 perm   4 sec   (4588 perm/sec)   p_kst 1.495000e-02   p_cons 1.111000e-01   p_joint 1.650000e-02

Joint ci ratio: 2.047805e-01	ci left: 1.083028e-02	ci right 1.333222e-02	k: 361	n:30000
Cons ci ratio: 6.325014e-02	ci left: 1.098986e-01	ci right 1.171098e-01	k: 3404	n:30000
KS ci ratio: 1.786206e-01	ci left: 1.438741e-02	ci right 1.724081e-02	k: 473	n:30000
MARK2   30000 perm   7 sec   (4322 perm/sec)   p_kst 1.576667e-02   p_cons 1.134667e-01   p_joint 1.203333e-02

Joint ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
Cons ci ratio: 5.438529e-02	ci left: 1.118151e-01	ci right 1.180910e-01	k: 4597	n:40000
KS ci ratio: 1.563324e-01	ci left: 1.426412e-02	ci right 1.670696e-02	k: 618	n:40000
MARK2   40000 perm   10 sec   (4199 perm/sec)   p_kst 1.545000e-02   p_cons 1.149250e-01   p_joint 6.650000e-03

Joint ci ratio: 1.602899e-01	ci left: 1.087191e-02	ci right 1.278539e-02	k: 590	n:50000
Cons ci ratio: 4.828146e-02	ci left: 1.136607e-01	ci right 1.193040e-01	k: 5823	n:50000
KS ci ratio: 1.397137e-01	ci left: 1.441612e-02	ci right 1.660066e-02	k: 774	n:50000
MARK2   50000 perm   12 sec   (4106 perm/sec)   p_kst 1.548000e-02   p_cons 1.164600e-01   p_joint 1.180000e-02

Joint ci ratio: 1.552287e-01	ci left: 9.699815e-03	ci right 1.134805e-02	k: 630	n:60000
Cons ci ratio: 4.405268e-02	ci left: 1.140092e-01	ci right 1.191613e-01	k: 6994	n:60000
KS ci ratio: 1.255667e-01	ci left: 1.497883e-02	ci right 1.700171e-02	k: 958	n:60000
MARK2   60000 perm   15 sec   (4019 perm/sec)   p_kst 1.596667e-02   p_cons 1.165667e-01   p_joint 1.050000e-02

Joint ci ratio: 1.580220e-01	ci left: 8.025326e-03	ci right 9.415858e-03	k: 609	n:70000
Cons ci ratio: 4.071105e-02	ci left: 1.145711e-01	ci right 1.193465e-01	k: 8186	n:70000
KS ci ratio: 1.165083e-01	ci left: 1.498631e-02	ci right 1.685413e-02	k: 1113	n:70000
MARK2   70000 perm   18 sec   (3941 perm/sec)   p_kst 1.590000e-02   p_cons 1.169429e-01   p_joint 8.700000e-03

Joint ci ratio: 1.695470e-01	ci left: 6.074551e-03	ci right 7.211672e-03	k: 530	n:80000
Cons ci ratio: 3.810380e-02	ci left: 1.146068e-01	ci right 1.190710e-01	k: 9346	n:80000
KS ci ratio: 1.086866e-01	ci left: 1.512969e-02	ci right 1.688067e-02	k: 1279	n:80000
MARK2   80000 perm   21 sec   (3865 perm/sec)   p_kst 1.598750e-02   p_cons 1.168250e-01   p_joint 6.625000e-03

Joint ci ratio: 1.281541e-01	ci left: 9.629123e-03	ci right 1.095828e-02	k: 925	n:90000
Cons ci ratio: 3.723077e-02	ci left: 1.076212e-01	ci right 1.117151e-01	k: 9869	n:90000
KS ci ratio: 1.030174e-01	ci left: 1.501704e-02	ci right 1.665883e-02	k: 1424	n:90000
MARK2   90000 perm   24 sec   (3799 perm/sec)   p_kst 1.582222e-02   p_cons 1.096556e-01   p_joint 1.027778e-02

Joint ci ratio: 1.013819e-01	ci left: 1.398268e-02	ci right 1.548566e-02	k: 1472	n:100000
Cons ci ratio: 3.533591e-02	ci left: 1.076404e-01	ci right 1.115223e-01	k: 10957	n:100000
KS ci ratio: 9.777279e-02	ci left: 1.504594e-02	ci right 1.660233e-02	k: 1581	n:100000
MARK2   100000 perm   27 sec   (3732 perm/sec)   p_kst 1.581000e-02   p_cons 1.095700e-01   p_joint 1.472000e-02

Joint ci ratio: 1.056757e-01	ci left: 1.170125e-02	ci right 1.301556e-02	k: 1358	n:110000
Cons ci ratio: 3.366921e-02	ci left: 1.078589e-01	ci right 1.115617e-01	k: 12067	n:110000
KS ci ratio: 9.399962e-02	ci left: 1.483153e-02	ci right 1.630327e-02	k: 1711	n:110000
MARK2   110000 perm   30 sec   (3672 perm/sec)   p_kst 1.555455e-02   p_cons 1.097000e-01   p_joint 1.234545e-02

Joint ci ratio: 1.015780e-01	ci left: 1.163527e-02	ci right 1.288847e-02	k: 1470	n:120000
Cons ci ratio: 3.221122e-02	ci left: 1.080860e-01	ci right 1.116329e-01	k: 13182	n:120000
KS ci ratio: 8.981812e-02	ci left: 1.492271e-02	ci right 1.633417e-02	k: 1874	n:120000
MARK2   120000 perm   33 sec   (3605 perm/sec)   p_kst 1.561667e-02   p_cons 1.098500e-01   p_joint 1.225000e-02

Joint ci ratio: 9.414179e-02	ci left: 1.254154e-02	ci right 1.378801e-02	k: 1710	n:130000
Cons ci ratio: 3.092636e-02	ci left: 1.082887e-01	ci right 1.116979e-01	k: 14298	n:130000
KS ci ratio: 8.370014e-02	ci left: 1.589735e-02	ci right 1.729357e-02	k: 2156	n:130000
MARK2   130000 perm   37 sec   (3551 perm/sec)   p_kst 1.658462e-02   p_cons 1.099846e-01   p_joint 1.315385e-02

Outputting figure to mutsig2_images.part000000000102/MARK2.4_2443_130000_0.016585_0.10998_0.013154.png
                gene_name: MARK2
               theta_stop: 0.094 
                    nperm: 130000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 64 percent done.
MAT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
Cons ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
KS ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
MAT1A   10000 perm   2 sec   (5828 perm/sec)   p_kst 2.044000e-01   p_cons 7.830000e-01   p_joint 4.224000e-01

Outputting figure to mutsig2_images.part000000000102/MAT1A.4_1224_10000_0.2044_0.783_0.4224.png
                gene_name: MAT1A
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 66 percent done.
MATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
MATR3   10000 perm   2 sec   (5570 perm/sec)   p_kst 7.539000e-01   p_cons 5.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MATR3.4_2600_10000_0.7539_0.5121_1.png
                gene_name: MATR3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
MAVS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
KS ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
MAVS   10000 perm   2 sec   (6014 perm/sec)   p_kst 3.155000e-01   p_cons 3.000000e-03   p_joint 1.230000e-02

Joint ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
Cons ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
KS ci ratio: 4.144079e-02	ci left: 3.026488e-01	ci right 3.155067e-01	k: 6181	n:20000
MAVS   20000 perm   4 sec   (5329 perm/sec)   p_kst 3.090500e-01   p_cons 2.350000e-03   p_joint 7.550000e-03

Joint ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
Cons ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
KS ci ratio: 3.377039e-02	ci left: 3.046689e-01	ci right 3.151679e-01	k: 9297	n:30000
MAVS   30000 perm   6 sec   (5070 perm/sec)   p_kst 3.099000e-01   p_cons 2.633333e-03   p_joint 1.656667e-02

Joint ci ratio: 1.940375e-01	ci left: 9.119511e-03	ci right 1.110258e-02	k: 403	n:40000
Cons ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
KS ci ratio: 2.926028e-02	ci left: 3.051703e-01	ci right 3.142573e-01	k: 12388	n:40000
MAVS   40000 perm   8 sec   (4887 perm/sec)   p_kst 3.097000e-01   p_cons 2.700000e-03   p_joint 1.007500e-02

Joint ci ratio: 2.205205e-01	ci left: 5.587458e-03	ci right 6.990790e-03	k: 313	n:50000
Cons ci ratio: 3.344457e-01	ci left: 2.282567e-03	ci right 3.216655e-03	k: 136	n:50000
KS ci ratio: 2.565897e-02	ci left: 3.141379e-01	ci right 3.223232e-01	k: 15911	n:50000
MAVS   50000 perm   11 sec   (4759 perm/sec)   p_kst 3.182200e-01   p_cons 2.720000e-03   p_joint 6.260000e-03

Joint ci ratio: 1.445001e-01	ci left: 1.124050e-02	ci right 1.300716e-02	k: 726	n:60000
Cons ci ratio: 3.104615e-01	ci left: 2.239157e-03	ci right 3.076771e-03	k: 158	n:60000
KS ci ratio: 2.343899e-02	ci left: 3.142078e-01	ci right 3.216765e-01	k: 19076	n:60000
MAVS   60000 perm   13 sec   (4635 perm/sec)   p_kst 3.179333e-01   p_cons 2.633333e-03   p_joint 1.210000e-02

Joint ci ratio: 1.593449e-01	ci left: 7.888098e-03	ci right 9.267388e-03	k: 599	n:70000
Cons ci ratio: 2.878210e-01	ci left: 2.262873e-03	ci right 3.036416e-03	k: 184	n:70000
KS ci ratio: 2.171924e-02	ci left: 3.141090e-01	ci right 3.210204e-01	k: 22229	n:70000
MAVS   70000 perm   15 sec   (4527 perm/sec)   p_kst 3.175571e-01   p_cons 2.628571e-03   p_joint 8.557143e-03

Joint ci ratio: 1.614774e-01	ci left: 6.721780e-03	ci right 7.914369e-03	k: 584	n:80000
Cons ci ratio: 2.663602e-01	ci left: 2.340640e-03	ci right 3.071167e-03	k: 215	n:80000
KS ci ratio: 2.034037e-02	ci left: 3.138259e-01	ci right 3.202873e-01	k: 25364	n:80000
MAVS   80000 perm   18 sec   (4427 perm/sec)   p_kst 3.170500e-01   p_cons 2.687500e-03   p_joint 7.300000e-03

Joint ci ratio: 1.280145e-01	ci left: 9.650640e-03	ci right 1.098121e-02	k: 927	n:90000
Cons ci ratio: 2.432249e-01	ci left: 2.527925e-03	ci right 3.238051e-03	k: 258	n:90000
KS ci ratio: 1.922374e-02	ci left: 3.129630e-01	ci right 3.190488e-01	k: 28440	n:90000
MAVS   90000 perm   21 sec   (4334 perm/sec)   p_kst 3.160000e-01   p_cons 2.866667e-03   p_joint 1.030000e-02

Joint ci ratio: 1.292103e-01	ci left: 8.530401e-03	ci right 9.718333e-03	k: 911	n:100000
Cons ci ratio: 2.306542e-01	ci left: 2.547930e-03	ci right 3.221417e-03	k: 287	n:100000
KS ci ratio: 1.826306e-02	ci left: 3.125104e-01	ci right 3.182803e-01	k: 31539	n:100000
MAVS   100000 perm   24 sec   (4233 perm/sec)   p_kst 3.153900e-01   p_cons 2.870000e-03   p_joint 9.110000e-03

Joint ci ratio: 1.229008e-01	ci left: 8.600146e-03	ci right 9.735050e-03	k: 1007	n:110000
Cons ci ratio: 2.184726e-01	ci left: 2.599443e-03	ci right 3.245389e-03	k: 320	n:110000
KS ci ratio: 1.740838e-02	ci left: 3.127632e-01	ci right 3.182647e-01	k: 34706	n:110000
MAVS   110000 perm   26 sec   (4160 perm/sec)   p_kst 3.155091e-01   p_cons 2.909091e-03   p_joint 9.154545e-03

Joint ci ratio: 1.310584e-01	ci left: 6.914796e-03	ci right 7.892569e-03	k: 887	n:120000
Cons ci ratio: 2.068683e-01	ci left: 2.674755e-03	ci right 3.299648e-03	k: 357	n:120000
KS ci ratio: 1.667664e-02	ci left: 3.126382e-01	ci right 3.179041e-01	k: 37832	n:120000
MAVS   120000 perm   29 sec   (4073 perm/sec)   p_kst 3.152667e-01   p_cons 2.975000e-03   p_joint 7.391667e-03

Joint ci ratio: 1.269851e-01	ci left: 6.814621e-03	ci right 7.746022e-03	k: 945	n:130000
Cons ci ratio: 1.981982e-01	ci left: 2.702683e-03	ci right 3.304440e-03	k: 389	n:130000
KS ci ratio: 1.602261e-02	ci left: 3.127362e-01	ci right 3.177951e-01	k: 40984	n:130000
MAVS   130000 perm   32 sec   (4003 perm/sec)   p_kst 3.152615e-01   p_cons 2.992308e-03   p_joint 7.269231e-03

Joint ci ratio: 1.237044e-01	ci left: 6.680697e-03	ci right 7.568472e-03	k: 996	n:140000
Cons ci ratio: 1.905341e-01	ci left: 2.727089e-03	ci right 3.308083e-03	k: 421	n:140000
KS ci ratio: 1.543612e-02	ci left: 3.129306e-01	ci right 3.178057e-01	k: 44151	n:140000
MAVS   140000 perm   36 sec   (3937 perm/sec)   p_kst 3.153643e-01   p_cons 3.007143e-03   p_joint 7.114286e-03

Joint ci ratio: 1.043136e-01	ci left: 8.839900e-03	ci right 9.819207e-03	k: 1398	n:150000
Cons ci ratio: 1.832910e-01	ci left: 2.761351e-03	ci right 3.324796e-03	k: 455	n:150000
KS ci ratio: 1.489770e-02	ci left: 3.134479e-01	ci right 3.181592e-01	k: 47370	n:150000
MAVS   150000 perm   39 sec   (3869 perm/sec)   p_kst 3.158000e-01   p_cons 3.033333e-03   p_joint 9.320000e-03

Joint ci ratio: 8.896960e-02	ci left: 1.145387e-02	ci right 1.252643e-02	k: 1917	n:160000
Cons ci ratio: 1.768156e-01	ci left: 2.791695e-03	ci right 3.339057e-03	k: 489	n:160000
KS ci ratio: 1.444156e-02	ci left: 3.130173e-01	ci right 3.175769e-01	k: 50447	n:160000
MAVS   160000 perm   42 sec   (3807 perm/sec)   p_kst 3.152937e-01   p_cons 3.056250e-03   p_joint 1.198125e-02

Joint ci ratio: 9.081449e-02	ci left: 1.034858e-02	ci right 1.133880e-02	k: 1842	n:170000
Cons ci ratio: 1.706550e-01	ci left: 2.830041e-03	ci right 3.363599e-03	k: 525	n:170000
KS ci ratio: 1.401095e-02	ci left: 3.130680e-01	ci right 3.174912e-01	k: 53597	n:170000
MAVS   170000 perm   45 sec   (3744 perm/sec)   p_kst 3.152765e-01   p_cons 3.088235e-03   p_joint 1.083529e-02

Joint ci ratio: 8.186497e-02	ci left: 1.206259e-02	ci right 1.309764e-02	k: 2263	n:180000
Cons ci ratio: 1.655402e-01	ci left: 2.848440e-03	ci right 3.367768e-03	k: 558	n:180000
KS ci ratio: 1.361721e-02	ci left: 3.130983e-01	ci right 3.173965e-01	k: 56744	n:180000
MAVS   180000 perm   49 sec   (3682 perm/sec)   p_kst 3.152444e-01   p_cons 3.100000e-03   p_joint 1.257222e-02

Joint ci ratio: 8.267201e-02	ci left: 1.121100e-02	ci right 1.218293e-02	k: 2221	n:190000
Cons ci ratio: 1.614073e-01	ci left: 2.844909e-03	ci right 3.349388e-03	k: 587	n:190000
KS ci ratio: 1.326380e-02	ci left: 3.128380e-01	ci right 3.170203e-01	k: 59836	n:190000
MAVS   190000 perm   52 sec   (3622 perm/sec)   p_kst 3.149263e-01   p_cons 3.089474e-03   p_joint 1.168947e-02

Joint ci ratio: 8.326676e-02	ci left: 1.050341e-02	ci right 1.142085e-02	k: 2191	n:200000
Cons ci ratio: 1.580841e-01	ci left: 2.822664e-03	ci right 3.311914e-03	k: 612	n:200000
KS ci ratio: 1.293790e-02	ci left: 3.125601e-01	ci right 3.166353e-01	k: 62919	n:200000
MAVS   200000 perm   56 sec   (3568 perm/sec)   p_kst 3.145950e-01   p_cons 3.060000e-03   p_joint 1.095500e-02

Joint ci ratio: 8.127076e-02	ci left: 1.051162e-02	ci right 1.140672e-02	k: 2300	n:210000
Cons ci ratio: 1.549580e-01	ci left: 2.802634e-03	ci right 3.277914e-03	k: 637	n:210000
KS ci ratio: 1.262233e-02	ci left: 3.127377e-01	ci right 3.167150e-01	k: 66092	n:210000
MAVS   210000 perm   60 sec   (3513 perm/sec)   p_kst 3.147238e-01   p_cons 3.033333e-03   p_joint 1.095238e-02

Joint ci ratio: 7.989921e-02	ci left: 1.039010e-02	ci right 1.125923e-02	k: 2380	n:220000
Cons ci ratio: 1.529385e-01	ci left: 2.749532e-03	ci right 3.209173e-03	k: 654	n:220000
KS ci ratio: 1.232761e-02	ci left: 3.129411e-01	ci right 3.168274e-01	k: 69274	n:220000
MAVS   220000 perm   64 sec   (3461 perm/sec)   p_kst 3.148818e-01   p_cons 2.972727e-03   p_joint 1.081818e-02

Joint ci ratio: 8.330776e-02	ci left: 9.137387e-03	ci right 9.935916e-03	k: 2192	n:230000
Cons ci ratio: 1.495520e-01	ci left: 2.755487e-03	ci right 3.205010e-03	k: 684	n:230000
KS ci ratio: 1.204449e-02	ci left: 3.134187e-01	ci right 3.172208e-01	k: 72523	n:230000
MAVS   230000 perm   67 sec   (3410 perm/sec)   p_kst 3.153174e-01   p_cons 2.973913e-03   p_joint 9.530435e-03

Joint ci ratio: 8.300041e-02	ci left: 8.825964e-03	ci right 9.594293e-03	k: 2209	n:240000
Cons ci ratio: 1.456674e-01	ci left: 2.789151e-03	ci right 3.231320e-03	k: 721	n:240000
KS ci ratio: 1.178750e-02	ci left: 3.135827e-01	ci right 3.173051e-01	k: 75706	n:240000
MAVS   240000 perm   71 sec   (3359 perm/sec)   p_kst 3.154417e-01   p_cons 3.004167e-03   p_joint 9.204167e-03

Joint ci ratio: 8.170191e-02	ci left: 8.751062e-03	ci right 9.500384e-03	k: 2280	n:250000
Cons ci ratio: 1.420705e-01	ci left: 2.820261e-03	ci right 3.255386e-03	k: 758	n:250000
KS ci ratio: 1.154897e-02	ci left: 3.136346e-01	ci right 3.172817e-01	k: 78864	n:250000
MAVS   250000 perm   76 sec   (3310 perm/sec)   p_kst 3.154560e-01   p_cons 3.032000e-03   p_joint 9.120000e-03

Joint ci ratio: 8.182502e-02	ci left: 8.391814e-03	ci right 9.111508e-03	k: 2274	n:260000
Cons ci ratio: 1.391667e-01	ci left: 2.830538e-03	ci right 3.257582e-03	k: 790	n:260000
KS ci ratio: 1.132072e-02	ci left: 3.138214e-01	ci right 3.173981e-01	k: 82058	n:260000
MAVS   260000 perm   80 sec   (3264 perm/sec)   p_kst 3.156077e-01   p_cons 3.038462e-03   p_joint 8.746154e-03

Joint ci ratio: 8.508553e-02	ci left: 7.467986e-03	ci right 8.135237e-03	k: 2105	n:270000
Cons ci ratio: 1.361852e-01	ci left: 2.850870e-03	ci right 3.271020e-03	k: 825	n:270000
KS ci ratio: 1.110493e-02	ci left: 3.140172e-01	ci right 3.175275e-01	k: 85258	n:270000
MAVS   270000 perm   84 sec   (3220 perm/sec)   p_kst 3.157704e-01   p_cons 3.055556e-03   p_joint 7.796296e-03

Joint ci ratio: 8.852931e-02	ci left: 6.645612e-03	ci right 7.264659e-03	k: 1946	n:280000
Cons ci ratio: 1.336993e-01	ci left: 2.856030e-03	ci right 3.268647e-03	k: 856	n:280000
KS ci ratio: 1.090561e-02	ci left: 3.140178e-01	ci right 3.174646e-01	k: 88407	n:280000
MAVS   280000 perm   88 sec   (3179 perm/sec)   p_kst 3.157393e-01   p_cons 3.057143e-03   p_joint 6.950000e-03

Joint ci ratio: 8.770489e-02	ci left: 6.541212e-03	ci right 7.144568e-03	k: 1983	n:290000
Cons ci ratio: 1.311967e-01	ci left: 2.867570e-03	ci right 3.273496e-03	k: 889	n:290000
KS ci ratio: 1.071648e-02	ci left: 3.140257e-01	ci right 3.174125e-01	k: 91558	n:290000
MAVS   290000 perm   93 sec   (3134 perm/sec)   p_kst 3.157172e-01   p_cons 3.065517e-03   p_joint 6.837931e-03

Joint ci ratio: 8.950347e-02	ci left: 6.068866e-03	ci right 6.640733e-03	k: 1905	n:300000
Cons ci ratio: 1.292516e-01	ci left: 2.859052e-03	ci right 3.257310e-03	k: 916	n:300000
KS ci ratio: 1.052720e-02	ci left: 3.144297e-01	ci right 3.177605e-01	k: 94828	n:300000
MAVS   300000 perm   97 sec   (3093 perm/sec)   p_kst 3.160933e-01   p_cons 3.053333e-03   p_joint 6.350000e-03

Joint ci ratio: 8.765771e-02	ci left: 6.128607e-03	ci right 6.693583e-03	k: 1986	n:310000
Cons ci ratio: 1.271880e-01	ci left: 2.860495e-03	ci right 3.252112e-03	k: 946	n:310000
KS ci ratio: 1.035539e-02	ci left: 3.144827e-01	ci right 3.177594e-01	k: 97997	n:310000
MAVS   310000 perm   102 sec   (3054 perm/sec)   p_kst 3.161194e-01   p_cons 3.051613e-03   p_joint 6.406452e-03

Joint ci ratio: 8.084355e-02	ci left: 6.998773e-03	ci right 7.591453e-03	k: 2333	n:320000
Cons ci ratio: 1.249638e-01	ci left: 2.874004e-03	ci right 3.260082e-03	k: 980	n:320000
KS ci ratio: 1.023669e-02	ci left: 3.126355e-01	ci right 3.158554e-01	k: 100558	n:320000
MAVS   320000 perm   106 sec   (3015 perm/sec)   p_kst 3.142437e-01   p_cons 3.062500e-03   p_joint 7.290625e-03

Joint ci ratio: 7.965820e-02	ci left: 6.994552e-03	ci right 7.577787e-03	k: 2403	n:330000
Cons ci ratio: 1.230349e-01	ci left: 2.877939e-03	ci right 3.258143e-03	k: 1011	n:330000
KS ci ratio: 1.007795e-02	ci left: 3.127646e-01	ci right 3.159356e-01	k: 103735	n:330000
MAVS   330000 perm   111 sec   (2976 perm/sec)   p_kst 3.143485e-01   p_cons 3.063636e-03   p_joint 7.281818e-03

Joint ci ratio: 7.845965e-02	ci left: 7.002175e-03	ci right 7.576859e-03	k: 2477	n:340000
Cons ci ratio: 1.214264e-01	ci left: 2.870277e-03	ci right 3.244155e-03	k: 1038	n:340000
KS ci ratio: 9.925690e-03	ci left: 3.129159e-01	ci right 3.160402e-01	k: 106922	n:340000
MAVS   340000 perm   116 sec   (2939 perm/sec)   p_kst 3.144765e-01   p_cons 3.052941e-03   p_joint 7.285294e-03

Joint ci ratio: 7.819819e-02	ci left: 6.849712e-03	ci right 7.409924e-03	k: 2494	n:350000
Cons ci ratio: 1.202192e-01	ci left: 2.846454e-03	ci right 3.213280e-03	k: 1059	n:350000
KS ci ratio: 9.779224e-03	ci left: 3.130988e-01	ci right 3.161785e-01	k: 110123	n:350000
MAVS   350000 perm   121 sec   (2898 perm/sec)   p_kst 3.146371e-01   p_cons 3.025714e-03   p_joint 7.125714e-03

Joint ci ratio: 8.210712e-02	ci left: 6.033246e-03	ci right 6.552527e-03	k: 2264	n:360000
Cons ci ratio: 1.183900e-01	ci left: 2.856317e-03	ci right 3.218422e-03	k: 1092	n:360000
KS ci ratio: 9.642470e-03	ci left: 3.131193e-01	ci right 3.161559e-01	k: 113269	n:360000
MAVS   360000 perm   126 sec   (2855 perm/sec)   p_kst 3.146361e-01   p_cons 3.033333e-03   p_joint 6.288889e-03

Joint ci ratio: 8.081403e-02	ci left: 6.063467e-03	ci right 6.576743e-03	k: 2337	n:370000
Cons ci ratio: 1.170072e-01	ci left: 2.847320e-03	ci right 3.203777e-03	k: 1118	n:370000
KS ci ratio: 9.509450e-03	ci left: 3.132226e-01	ci right 3.162181e-01	k: 116446	n:370000
MAVS   370000 perm   131 sec   (2822 perm/sec)   p_kst 3.147189e-01   p_cons 3.021622e-03   p_joint 6.316216e-03

Joint ci ratio: 7.988079e-02	ci left: 6.045729e-03	ci right 6.551318e-03	k: 2392	n:380000
Cons ci ratio: 1.157733e-01	ci left: 2.833709e-03	ci right 3.184464e-03	k: 1142	n:380000
KS ci ratio: 9.384076e-03	ci left: 3.132157e-01	ci right 3.161714e-01	k: 119583	n:380000
MAVS   380000 perm   136 sec   (2786 perm/sec)   p_kst 3.146921e-01   p_cons 3.005263e-03   p_joint 6.294737e-03

Joint ci ratio: 7.915833e-02	ci left: 6.001281e-03	ci right 6.498405e-03	k: 2436	n:390000
Cons ci ratio: 1.144301e-01	ci left: 2.828287e-03	ci right 3.174035e-03	k: 1169	n:390000
KS ci ratio: 9.265407e-03	ci left: 3.131223e-01	ci right 3.160395e-01	k: 122686	n:390000
MAVS   390000 perm   142 sec   (2752 perm/sec)   p_kst 3.145795e-01   p_cons 2.997436e-03   p_joint 6.246154e-03

Joint ci ratio: 8.137776e-02	ci left: 5.532717e-03	ci right 6.004485e-03	k: 2306	n:400000
Cons ci ratio: 1.126148e-01	ci left: 2.849884e-03	ci right 3.192378e-03	k: 1207	n:400000
KS ci ratio: 9.150438e-03	ci left: 3.130662e-01	ci right 3.159465e-01	k: 125802	n:400000
MAVS   400000 perm   147 sec   (2720 perm/sec)   p_kst 3.145050e-01   p_cons 3.017500e-03   p_joint 5.765000e-03

Joint ci ratio: 7.844515e-02	ci left: 5.816108e-03	ci right 6.293353e-03	k: 2481	n:410000
Cons ci ratio: 1.110173e-01	ci left: 2.863354e-03	ci right 3.202267e-03	k: 1242	n:410000
KS ci ratio: 9.039185e-03	ci left: 3.130350e-01	ci right 3.158798e-01	k: 128927	n:410000
MAVS   410000 perm   153 sec   (2687 perm/sec)   p_kst 3.144561e-01   p_cons 3.029268e-03   p_joint 6.051220e-03

Joint ci ratio: 7.907825e-02	ci left: 5.586575e-03	ci right 6.048855e-03	k: 2442	n:420000
Cons ci ratio: 1.097014e-01	ci left: 2.864636e-03	ci right 3.199421e-03	k: 1272	n:420000
KS ci ratio: 8.932781e-03	ci left: 3.129627e-01	ci right 3.157732e-01	k: 132034	n:420000
MAVS   420000 perm   158 sec   (2656 perm/sec)   p_kst 3.143667e-01   p_cons 3.028571e-03   p_joint 5.814286e-03

Joint ci ratio: 7.851993e-02	ci left: 5.536440e-03	ci right 5.991189e-03	k: 2477	n:430000
Cons ci ratio: 1.083062e-01	ci left: 2.872669e-03	ci right 3.203851e-03	k: 1305	n:430000
KS ci ratio: 8.829810e-03	ci left: 3.129056e-01	ci right 3.156830e-01	k: 135146	n:430000
MAVS   430000 perm   164 sec   (2626 perm/sec)   p_kst 3.142930e-01   p_cons 3.034884e-03   p_joint 5.760465e-03

Joint ci ratio: 7.763220e-02	ci left: 5.537628e-03	ci right 5.987100e-03	k: 2534	n:440000
Cons ci ratio: 1.072042e-01	ci left: 2.867090e-03	ci right 3.194054e-03	k: 1332	n:440000
KS ci ratio: 8.731379e-03	ci left: 3.127990e-01	ci right 3.155444e-01	k: 138235	n:440000
MAVS   440000 perm   170 sec   (2595 perm/sec)   p_kst 3.141705e-01   p_cons 3.027273e-03   p_joint 5.759091e-03

Joint ci ratio: 7.680373e-02	ci left: 5.534431e-03	ci right 5.978635e-03	k: 2589	n:450000
Cons ci ratio: 1.058621e-01	ci left: 2.876920e-03	ci right 3.200642e-03	k: 1366	n:450000
KS ci ratio: 8.636300e-03	ci left: 3.126907e-01	ci right 3.154051e-01	k: 141321	n:450000
MAVS   450000 perm   175 sec   (2567 perm/sec)   p_kst 3.140467e-01   p_cons 3.035556e-03   p_joint 5.753333e-03

Joint ci ratio: 7.590027e-02	ci left: 5.546328e-03	ci right 5.986019e-03	k: 2651	n:460000
Cons ci ratio: 1.048700e-01	ci left: 2.869410e-03	ci right 3.189074e-03	k: 1392	n:460000
KS ci ratio: 8.542148e-03	ci left: 3.126936e-01	ci right 3.153783e-01	k: 144456	n:460000
MAVS   460000 perm   181 sec   (2540 perm/sec)   p_kst 3.140348e-01   p_cons 3.026087e-03   p_joint 5.763043e-03

Joint ci ratio: 7.017263e-02	ci left: 6.364220e-03	ci right 6.829128e-03	k: 3099	n:470000
Cons ci ratio: 1.037222e-01	ci left: 2.872596e-03	ci right 3.188899e-03	k: 1423	n:470000
KS ci ratio: 8.450091e-03	ci left: 3.127434e-01	ci right 3.153994e-01	k: 147613	n:470000
MAVS   470000 perm   187 sec   (2512 perm/sec)   p_kst 3.140702e-01   p_cons 3.027660e-03   p_joint 6.593617e-03

Joint ci ratio: 7.030314e-02	ci left: 6.209100e-03	ci right 6.663555e-03	k: 3088	n:480000
Cons ci ratio: 1.027885e-01	ci left: 2.865517e-03	ci right 3.178029e-03	k: 1449	n:480000
KS ci ratio: 8.357554e-03	ci left: 3.129660e-01	ci right 3.155946e-01	k: 150854	n:480000
MAVS   480000 perm   193 sec   (2486 perm/sec)   p_kst 3.142792e-01   p_cons 3.018750e-03   p_joint 6.433333e-03

Joint ci ratio: 7.029634e-02	ci left: 6.084375e-03	ci right 6.529656e-03	k: 3089	n:490000
Cons ci ratio: 1.016038e-01	ci left: 2.874652e-03	ci right 3.184331e-03	k: 1483	n:490000
KS ci ratio: 8.271278e-03	ci left: 3.130084e-01	ci right 3.156101e-01	k: 154011	n:490000
MAVS   490000 perm   199 sec   (2459 perm/sec)   p_kst 3.143082e-01   p_cons 3.026531e-03   p_joint 6.304082e-03

Joint ci ratio: 6.480815e-02	ci left: 7.028512e-03	ci right 7.501225e-03	k: 3631	n:500000
Cons ci ratio: 1.006589e-01	ci left: 2.871743e-03	ci right 3.178061e-03	k: 1511	n:500000
KS ci ratio: 8.186517e-03	ci left: 3.131072e-01	ci right 3.156830e-01	k: 157197	n:500000
MAVS   500000 perm   205 sec   (2434 perm/sec)   p_kst 3.143940e-01   p_cons 3.022000e-03   p_joint 7.262000e-03

Joint ci ratio: 6.509317e-02	ci left: 6.830878e-03	ci right 7.292396e-03	k: 3600	n:510000
Cons ci ratio: 9.977232e-02	ci left: 2.867048e-03	ci right 3.170014e-03	k: 1538	n:510000
KS ci ratio: 8.108256e-03	ci left: 3.129927e-01	ci right 3.155428e-01	k: 160276	n:510000
MAVS   510000 perm   212 sec   (2408 perm/sec)   p_kst 3.142667e-01   p_cons 3.015686e-03   p_joint 7.058824e-03

Outputting figure to mutsig2_images.part000000000102/MAVS.4_1647_510000_0.31427_0.0030157_0.0070588.png
                gene_name: MAVS
               theta_stop: 0.100 
                    nperm: 510000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0030 
      ci_cons_bounds_left: 0.0029 
     ci_cons_bounds_right: 0.0032 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0073 

Current progress: 69 percent done.
MAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
MAP7   10000 perm   2 sec   (6162 perm/sec)   p_kst 8.657000e-01   p_cons 4.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP7.3_2322_10000_0.8657_0.4948_1.png
                gene_name: MAP7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
MAP7D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
Cons ci ratio: 3.161796e-02	ci left: 5.961424e-01	ci right 6.153959e-01	k: 6058	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
MAP7D3   10000 perm   2 sec   (5313 perm/sec)   p_kst 6.702000e-01   p_cons 6.058000e-01   p_joint 8.098000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7D3.3_2723_10000_0.6702_0.6058_0.8098.png
                gene_name: MAP7D3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 72 percent done.
MAPK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
MAPK8   10000 perm   2 sec   (6296 perm/sec)   p_kst 6.230000e-01   p_cons 3.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK8.3_1409_10000_0.623_0.3995_1.png
                gene_name: MAPK8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MAPKAPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
MAPKAPK2   10000 perm   2 sec   (6310 perm/sec)   p_kst 4.275000e-01   p_cons 4.370000e-02   p_joint 1.866000e-01

Joint ci ratio: 3.254684e-02	ci left: 4.134960e-01	ci right 4.272272e-01	k: 8407	n:20000
Cons ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
KS ci ratio: 3.152632e-02	ci left: 4.290623e-01	ci right 4.428563e-01	k: 8719	n:20000
MAPKAPK2   20000 perm   4 sec   (5529 perm/sec)   p_kst 4.359500e-01   p_cons 3.980000e-02   p_joint 4.203500e-01

Joint ci ratio: 2.659792e-02	ci left: 4.143397e-01	ci right 4.255424e-01	k: 12598	n:30000
Cons ci ratio: 1.089940e-01	ci left: 3.907619e-02	ci right 4.361318e-02	k: 1239	n:30000
KS ci ratio: 2.574102e-02	ci left: 4.303451e-01	ci right 4.416006e-01	k: 13079	n:30000
MAPKAPK2   30000 perm   6 sec   (5223 perm/sec)   p_kst 4.359667e-01   p_cons 4.130000e-02   p_joint 4.199333e-01

Joint ci ratio: 2.359130e-02	ci left: 4.035274e-01	ci right 4.131859e-01	k: 16334	n:40000
Cons ci ratio: 9.326006e-02	ci left: 4.032391e-02	ci right 4.429288e-02	k: 1691	n:40000
KS ci ratio: 2.221431e-02	ci left: 4.328304e-01	ci right 4.425786e-01	k: 17508	n:40000
MAPKAPK2   40000 perm   8 sec   (5034 perm/sec)   p_kst 4.377000e-01   p_cons 4.227500e-02   p_joint 4.083500e-01

Outputting figure to mutsig2_images.part000000000102/MAPKAPK2.3_1301_40000_0.4377_0.042275_0.40835.png
                gene_name: MAPKAPK2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 75 percent done.
MAPKAPK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
Cons ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
KS ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
MAPKAPK5   10000 perm   2 sec   (5895 perm/sec)   p_kst 1.167000e-01   p_cons 4.802000e-01   p_joint 1.344000e-01

Joint ci ratio: 6.983390e-02	ci left: 1.313267e-01	ci right 1.408794e-01	k: 2721	n:20000
Cons ci ratio: 2.898137e-02	ci left: 4.707560e-01	ci right 4.846504e-01	k: 9554	n:20000
KS ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
MAPKAPK5   20000 perm   4 sec   (5223 perm/sec)   p_kst 1.168000e-01   p_cons 4.777000e-01   p_joint 1.360500e-01

Outputting figure to mutsig2_images.part000000000102/MAPKAPK5.3_1478_20000_0.1168_0.4777_0.13605.png
                gene_name: MAPKAPK5
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 77 percent done.
MARCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
Cons ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
KS ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
MARCH8   10000 perm   2 sec   (6207 perm/sec)   p_kst 5.541000e-01   p_cons 1.875000e-01   p_joint 7.587000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH8.3_900_10000_0.5541_0.1875_0.7587.png
                gene_name: MARCH8
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 79 percent done.
MAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
Cons ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
KS ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
MAS1   10000 perm   2 sec   (6366 perm/sec)   p_kst 9.653000e-01   p_cons 1.124000e-01   p_joint 4.068000e-01

Joint ci ratio: 4.899612e-02	ci left: 2.364737e-01	ci right 2.484013e-01	k: 4848	n:20000
Cons ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
KS ci ratio: 5.348133e-03	ci left: 9.614800e-01	ci right 9.666840e-01	k: 19283	n:20000
MAS1   20000 perm   4 sec   (5592 perm/sec)   p_kst 9.641500e-01   p_cons 1.124500e-01   p_joint 2.424000e-01

Outputting figure to mutsig2_images.part000000000102/MAS1.3_982_20000_0.96415_0.11245_0.2424.png
                gene_name: MAS1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 80 percent done.
MASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
MASTL   10000 perm   2 sec   (5324 perm/sec)   p_kst 7.449000e-01   p_cons 5.260000e-02   p_joint 3.444000e-01

Joint ci ratio: 2.892336e-02	ci left: 4.717553e-01	ci right 4.856509e-01	k: 9574	n:20000
Cons ci ratio: 1.175168e-01	ci left: 4.959502e-02	ci right 5.583583e-02	k: 1053	n:20000
KS ci ratio: 1.631684e-02	ci left: 7.365312e-01	ci right 7.486982e-01	k: 14853	n:20000
MASTL   20000 perm   4 sec   (4796 perm/sec)   p_kst 7.426500e-01   p_cons 5.265000e-02   p_joint 4.787000e-01

Joint ci ratio: 2.441328e-02	ci left: 4.565122e-01	ci right 4.678285e-01	k: 13865	n:30000
Cons ci ratio: 9.646915e-02	ci left: 4.964467e-02	ci right 5.470917e-02	k: 1564	n:30000
KS ci ratio: 1.335929e-02	ci left: 7.366065e-01	ci right 7.465467e-01	k: 22248	n:30000
MASTL   30000 perm   7 sec   (4558 perm/sec)   p_kst 7.416000e-01   p_cons 5.213333e-02   p_joint 4.621667e-01

Outputting figure to mutsig2_images.part000000000102/MASTL.3_2688_30000_0.7416_0.052133_0.46217.png
                gene_name: MASTL
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
MAT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751375e-02	ci left: 5.120544e-01	ci right 5.317328e-01	k: 5219	n:10000
Cons ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
KS ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
MAT2B   10000 perm   2 sec   (6536 perm/sec)   p_kst 4.139000e-01   p_cons 3.800000e-01   p_joint 5.219000e-01

Outputting figure to mutsig2_images.part000000000102/MAT2B.3_1067_10000_0.4139_0.38_0.5219.png
                gene_name: MAT2B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 84 percent done.
MATK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
Cons ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
KS ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
MATK   10000 perm   2 sec   (6060 perm/sec)   p_kst 7.955000e-01   p_cons 5.512000e-01   p_joint 8.431000e-01

Outputting figure to mutsig2_images.part000000000102/MATK.3_1655_10000_0.7955_0.5512_0.8431.png
                gene_name: MATK
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 85 percent done.
MATN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
KS ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
MATN4   10000 perm   2 sec   (6045 perm/sec)   p_kst 5.415000e-01   p_cons 2.813000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000102/MATN4.3_1782_10000_0.5415_0.2813_0.6374.png
                gene_name: MATN4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 87 percent done.
MAP3K8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
KS ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
MAP3K8   10000 perm   2 sec   (6511 perm/sec)   p_kst 5.185000e-01   p_cons 9.042000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP3K8.2_1432_10000_0.5185_0.9042_1.png
                gene_name: MAP3K8
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
MAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
Cons ci ratio: 2.833421e-03	ci left: 9.932998e-01	ci right 9.962004e-01	k: 9949	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
MAP6   10000 perm   2 sec   (5797 perm/sec)   p_kst 4.630000e-02   p_cons 9.949000e-01   p_joint 9.244000e-01

Joint ci ratio: 3.069411e-02	ci left: 4.422392e-01	ci right 4.560756e-01	k: 8983	n:20000
Cons ci ratio: 2.098434e-03	ci left: 9.932110e-01	ci right 9.953414e-01	k: 19887	n:20000
KS ci ratio: 1.266618e-01	ci left: 4.279850e-02	ci right 4.863449e-02	k: 913	n:20000
MAP6   20000 perm   4 sec   (5094 perm/sec)   p_kst 4.565000e-02   p_cons 9.943500e-01   p_joint 4.491500e-01

Joint ci ratio: 1.654134e-02	ci left: 6.463780e-01	ci right 6.571926e-01	k: 19554	n:30000
Cons ci ratio: 1.792285e-03	ci left: 9.928456e-01	ci right 9.946568e-01	k: 29814	n:30000
KS ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
MAP6   30000 perm   6 sec   (4832 perm/sec)   p_kst 4.603333e-02   p_cons 9.938000e-01   p_joint 6.518000e-01

Joint ci ratio: 1.796412e-02	ci left: 5.385531e-01	ci right 5.483406e-01	k: 21738	n:40000
Cons ci ratio: 1.588330e-03	ci left: 9.926631e-01	ci right 9.942640e-01	k: 39740	n:40000
KS ci ratio: 9.058164e-02	ci left: 4.269554e-02	ci right 4.677089e-02	k: 1788	n:40000
MAP6   40000 perm   9 sec   (4672 perm/sec)   p_kst 4.470000e-02   p_cons 9.935000e-01   p_joint 5.434500e-01

Outputting figure to mutsig2_images.part000000000102/MAP6.2_2462_40000_0.0447_0.9935_0.54345.png
                gene_name: MAP6
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 90 percent done.
MAPK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
KS ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
MAPK15   10000 perm   2 sec   (6237 perm/sec)   p_kst 8.675000e-01   p_cons 4.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK15.2_1691_10000_0.8675_0.459_1.png
                gene_name: MAPK15
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
MARK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
Cons ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
KS ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
MARK4   10000 perm   2 sec   (5765 perm/sec)   p_kst 3.082000e-01   p_cons 8.440000e-02   p_joint 9.260000e-02

Joint ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
Cons ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
KS ci ratio: 4.160631e-02	ci left: 3.009589e-01	ci right 3.137972e-01	k: 6147	n:20000
MARK4   20000 perm   4 sec   (5178 perm/sec)   p_kst 3.073500e-01   p_cons 8.400000e-02   p_joint 8.285000e-02

Outputting figure to mutsig2_images.part000000000102/MARK4.2_2139_20000_0.30735_0.084_0.08285.png
                gene_name: MARK4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 93 percent done.
MARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.298924e-02	ci left: 3.442234e-01	ci right 3.630619e-01	k: 3536	n:10000
Cons ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
MARS   10000 perm   2 sec   (5592 perm/sec)   p_kst 6.440000e-02   p_cons 6.256000e-01   p_joint 3.536000e-01

Joint ci ratio: 6.005810e-02	ci left: 1.703000e-01	ci right 1.808945e-01	k: 3511	n:20000
Cons ci ratio: 2.240763e-02	ci left: 5.979344e-01	ci right 6.115351e-01	k: 12095	n:20000
KS ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
MARS   20000 perm   4 sec   (4917 perm/sec)   p_kst 6.200000e-02   p_cons 6.047500e-01   p_joint 1.755500e-01

Joint ci ratio: 4.571674e-02	ci left: 1.923139e-01	ci right 2.013449e-01	k: 5904	n:30000
Cons ci ratio: 1.834779e-02	ci left: 5.978379e-01	ci right 6.089421e-01	k: 18102	n:30000
KS ci ratio: 8.828207e-02	ci left: 5.893788e-02	ci right 6.441405e-02	k: 1849	n:30000
MARS   30000 perm   6 sec   (4699 perm/sec)   p_kst 6.163333e-02   p_cons 6.034000e-01   p_joint 1.968000e-01

Outputting figure to mutsig2_images.part000000000102/MARS.2_2787_30000_0.061633_0.6034_0.1968.png
                gene_name: MARS
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 95 percent done.
MARVELD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
Cons ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
KS ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
MARVELD3   10000 perm   2 sec   (6108 perm/sec)   p_kst 5.480000e-01   p_cons 3.518000e-01   p_joint 7.673000e-01

Outputting figure to mutsig2_images.part000000000102/MARVELD3.2_1860_10000_0.548_0.3518_0.7673.png
                gene_name: MARVELD3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 97 percent done.
MASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
Cons ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
KS ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
MASP2   10000 perm   2 sec   (5869 perm/sec)   p_kst 7.967000e-01   p_cons 7.040000e-01   p_joint 9.460000e-01

Outputting figure to mutsig2_images.part000000000102/MASP2.2_2123_10000_0.7967_0.704_0.946.png
                gene_name: MASP2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 98 percent done.
MATN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
Cons ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
KS ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
MATN3   10000 perm   2 sec   (6136 perm/sec)   p_kst 4.093000e-01   p_cons 4.537000e-01   p_joint 7.114000e-01

Outputting figure to mutsig2_images.part000000000102/MATN3.2_1493_10000_0.4093_0.4537_0.7114.png
                gene_name: MATN3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000102
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 102 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1531>
Subject: Job 4422168: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1531>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000103> was used as the working directory.
Started at Wed Oct 24 17:59:03 2012
Results reported at Wed Oct 24 18:58:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000103.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000103.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 103  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000103.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3973.90 sec.
    Max Memory :      5338 MB
    Max Swap   :      7891 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
103
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 103
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 103: processing genes 9229 - 9318
Calculating significance of each gene.
Using projection method.
In gene MAX the following bins exceed PROBCAP:
    LUAD-75-6212-TP	categ 6	N = 843     n = 1	mu =   2.01e-07
9229	MAX	1.450848e-01
9230	MAZ	9.406042e-01
9231	MB	1
9232	MBD1	5.052015e-02
9233	MBD2	9.038039e-01
9234	MBD3	7.944043e-01
9235	MBD3L1	1
9236	MBD4	6.816136e-01
9237	MBD5	9.993502e-01
9238	MBD6	9.531981e-01
9239	MBIP	2.506229e-01
9240	MBL2	1
9241	MBLAC1	1
9242	MBLAC2	2.884306e-01
9243	MBNL1	4.909645e-01
9244	MBNL2	3.426885e-01
9245	MBNL3	4.293741e-01
9246	MBOAT1	4.678280e-01
9247	MBOAT2	9.507547e-01
9248	MBOAT7	1
9249	MBP	6.352587e-01
9250	MBTD1	1
9251	MBTPS1	9.472276e-01
9252	MBTPS2	1
9253	MC1R	1
9254	MC2R	1
9255	MC3R	2.783454e-01
9256	MC4R	7.304574e-01
9257	MC5R	1
9258	MCAM	8.444911e-01
9259	MCART1	1
9260	MCART2	7.477631e-02
9261	MCART6	9.502602e-02
9262	MCAT	8.410243e-01
9263	MCC	9.970165e-01
9264	MCCC1	9.869219e-01
9265	MCCC2	6.243203e-01
9266	MCCD1	1
9267	MCEE	3.801538e-01
9268	MCF2	1.610094e-02
9269	MCF2L	9.896172e-01
9270	MCF2L2	7.054828e-01
9271	MCFD2	3.905450e-01
9272	MCHR1	1
9273	MCHR2	3.543233e-02
9274	MCL1	9.202407e-01
9275	MCM10	9.424827e-01
9276	MCM2	1
9277	MCM3	4.375835e-01
9278	MCM3AP	9.998316e-01
9279	MCM4	5.973437e-01
9280	MCM5	8.522155e-01
9281	MCM6	8.577437e-02
9282	MCM7	7.737466e-01
9283	MCM8	1
9284	MCM9	1.663025e-01
9285	MCOLN1	1
9286	MCOLN2	8.227868e-01
9287	MCOLN3	1.319061e-01
9288	MCPH1	9.716180e-01
9289	MCRS1	4.971620e-01
9290	MCTP1	9.858037e-01
9291	MCTP2	7.983384e-01
9292	MCTS1	3.696291e-01
9293	MDC1	5.465190e-01
9294	MDFI	1
9295	MDFIC	3.939471e-01
9296	MDGA1	9.467535e-01
9297	MDGA2	7.224618e-01
9298	MDH1	3.631607e-01
9299	MDH1B	8.279386e-02
9300	MDH2	4.841436e-01
9301	MDK	1
9302	MDM1	9.457450e-01
9303	MDM2	7.927245e-01
9304	MDM4	1
9305	MDN1	1
9306	MDP1	2.069196e-01
9307	ME1	8.769146e-01
9308	ME2	3.270251e-01
9309	ME3	7.456592e-01
9310	MEA1	1
9311	MEAF6	4.084675e-01
9312	MECOM	3.226790e-01
9313	MECP2	8.401074e-02
9314	MECR	8.168272e-01
9315	MED1	3.049738e-01
9316	MED10	1
9317	MED11	3.056352e-01
9318	MED12	9.208698e-01
Done

Running MutSig 2:
Scatter job 103: processing genes 9229 - 9318
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MDN1
Processing conservation and coverage...
58% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
MDN1   10000 perm   6 sec   (1769 perm/sec)   p_kst 7.784000e-01   p_cons 9.400000e-03   p_joint 4.590000e-02

Joint ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
Cons ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
KS ci ratio: 1.409732e-02	ci left: 7.888324e-01	ci right 8.000819e-01	k: 15890	n:20000
MDN1   20000 perm   15 sec   (1317 perm/sec)   p_kst 7.945000e-01   p_cons 1.130000e-02   p_joint 6.425000e-02

Joint ci ratio: 8.772748e-02	ci left: 5.965607e-02	ci right 6.516238e-02	k: 1871	n:30000
Cons ci ratio: 2.101336e-01	ci left: 1.026113e-02	ci right 1.270152e-02	k: 343	n:30000
KS ci ratio: 1.120767e-02	ci left: 7.985206e-01	ci right 8.075539e-01	k: 24092	n:30000
MDN1   30000 perm   22 sec   (1392 perm/sec)   p_kst 8.030667e-01   p_cons 1.143333e-02   p_joint 6.236667e-02

Joint ci ratio: 6.997347e-02	ci left: 7.019872e-02	ci right 7.531351e-02	k: 2909	n:40000
Cons ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
KS ci ratio: 1.071362e-02	ci left: 7.657936e-01	ci right 7.740672e-01	k: 30798	n:40000
MDN1   40000 perm   28 sec   (1426 perm/sec)   p_kst 7.699500e-01   p_cons 1.130000e-02   p_joint 7.272500e-02

Joint ci ratio: 6.466655e-02	ci left: 6.624189e-02	ci right 7.068837e-02	k: 3422	n:50000
Cons ci ratio: 1.612591e-01	ci left: 1.073749e-02	ci right 1.263984e-02	k: 583	n:50000
KS ci ratio: 9.625009e-03	ci left: 7.646567e-01	ci right 7.720721e-01	k: 38419	n:50000
MDN1   50000 perm   35 sec   (1443 perm/sec)   p_kst 7.683800e-01   p_cons 1.166000e-02   p_joint 6.844000e-02

Joint ci ratio: 5.529663e-02	ci left: 7.514230e-02	ci right 7.943203e-02	k: 4636	n:60000
Cons ci ratio: 1.513955e-01	ci left: 1.021289e-02	ci right 1.190157e-02	k: 662	n:60000
KS ci ratio: 8.769440e-03	ci left: 7.656733e-01	ci right 7.724340e-01	k: 46144	n:60000
MDN1   60000 perm   41 sec   (1457 perm/sec)   p_kst 7.690667e-01   p_cons 1.103333e-02   p_joint 7.726667e-02

Joint ci ratio: 5.132256e-02	ci left: 7.495082e-02	ci right 7.891291e-02	k: 5384	n:70000
Cons ci ratio: 1.406717e-01	ci left: 1.019914e-02	ci right 1.175608e-02	k: 767	n:70000
KS ci ratio: 8.124039e-03	ci left: 7.657016e-01	ci right 7.719618e-01	k: 53819	n:70000
MDN1   70000 perm   48 sec   (1459 perm/sec)   p_kst 7.688429e-01   p_cons 1.095714e-02   p_joint 7.691429e-02

Joint ci ratio: 4.754201e-02	ci left: 7.645986e-02	ci right 8.019579e-02	k: 6265	n:80000
Cons ci ratio: 1.305167e-01	ci left: 1.042180e-02	ci right 1.188897e-02	k: 891	n:80000
KS ci ratio: 7.611482e-03	ci left: 7.653353e-01	ci right 7.711953e-01	k: 61462	n:80000
MDN1   80000 perm   55 sec   (1462 perm/sec)   p_kst 7.682750e-01   p_cons 1.113750e-02   p_joint 7.831250e-02

Joint ci ratio: 4.699657e-02	ci left: 7.006672e-02	ci right 7.344983e-02	k: 6457	n:90000
Cons ci ratio: 1.232700e-01	ci left: 1.042575e-02	ci right 1.180603e-02	k: 999	n:90000
KS ci ratio: 7.177013e-03	ci left: 7.654624e-01	ci right 7.709870e-01	k: 69141	n:90000
MDN1   90000 perm   62 sec   (1463 perm/sec)   p_kst 7.682333e-01   p_cons 1.110000e-02   p_joint 7.174444e-02

Joint ci ratio: 4.453661e-02	ci left: 7.029647e-02	ci right 7.350842e-02	k: 7189	n:100000
Cons ci ratio: 1.158480e-01	ci left: 1.066380e-02	ci right 1.198477e-02	k: 1131	n:100000
KS ci ratio: 6.811262e-03	ci left: 7.654714e-01	ci right 7.707130e-01	k: 76810	n:100000
MDN1   100000 perm   68 sec   (1462 perm/sec)   p_kst 7.681000e-01   p_cons 1.131000e-02   p_joint 7.189000e-02

Joint ci ratio: 4.261223e-02	ci left: 6.991212e-02	ci right 7.296507e-02	k: 7857	n:110000
Cons ci ratio: 1.102867e-01	ci left: 1.072795e-02	ci right 1.198892e-02	k: 1248	n:110000
KS ci ratio: 6.486163e-03	ci left: 7.660414e-01	ci right 7.710353e-01	k: 84540	n:110000
MDN1   110000 perm   75 sec   (1461 perm/sec)   p_kst 7.685455e-01   p_cons 1.134545e-02   p_joint 7.142727e-02

Joint ci ratio: 4.125964e-02	ci left: 6.851311e-02	ci right 7.140771e-02	k: 8394	n:120000
Cons ci ratio: 1.061662e-01	ci left: 1.063659e-02	ci right 1.183720e-02	k: 1347	n:120000
KS ci ratio: 6.216058e-03	ci left: 7.658018e-01	ci right 7.705852e-01	k: 92184	n:120000
MDN1   120000 perm   82 sec   (1458 perm/sec)   p_kst 7.682000e-01   p_cons 1.122500e-02   p_joint 6.995000e-02

Joint ci ratio: 4.184163e-02	ci left: 6.192130e-02	ci right 6.457514e-02	k: 8221	n:130000
Cons ci ratio: 1.019072e-01	ci left: 1.068001e-02	ci right 1.183426e-02	k: 1462	n:130000
KS ci ratio: 5.962262e-03	ci left: 7.664907e-01	ci right 7.710820e-01	k: 99943	n:130000
MDN1   130000 perm   90 sec   (1449 perm/sec)   p_kst 7.687923e-01   p_cons 1.124615e-02   p_joint 6.323846e-02

Joint ci ratio: 4.051649e-02	ci left: 6.140025e-02	ci right 6.394647e-02	k: 8773	n:140000
Cons ci ratio: 9.790333e-02	ci left: 1.076683e-02	ci right 1.188212e-02	k: 1584	n:140000
KS ci ratio: 5.742946e-03	ci left: 7.667258e-01	ci right 7.711488e-01	k: 107652	n:140000
MDN1   140000 perm   97 sec   (1444 perm/sec)   p_kst 7.689429e-01   p_cons 1.131429e-02   p_joint 6.266429e-02

Outputting figure to mutsig2_images.part000000000103/MDN1.20_17199_140000_0.76894_0.011314_0.062664.png
                gene_name: MDN1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 2 percent done.
MDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 9.094428e-03	ci left: 9.445056e-01	ci right 9.532306e-01	k: 9490	n:10000
KS ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
MDC1   10000 perm   3 sec   (3148 perm/sec)   p_kst 3.470000e-02   p_cons 9.490000e-01   p_joint 1.161000e-01

Joint ci ratio: 7.694953e-02	ci left: 1.104132e-01	ci right 1.192991e-01	k: 2296	n:20000
Cons ci ratio: 6.411632e-03	ci left: 9.461172e-01	ci right 9.522514e-01	k: 18985	n:20000
KS ci ratio: 1.438477e-01	ci left: 3.321952e-02	ci right 3.841656e-02	k: 715	n:20000
MDC1   20000 perm   7 sec   (2901 perm/sec)   p_kst 3.575000e-02   p_cons 9.492500e-01   p_joint 1.148000e-01

Joint ci ratio: 6.024605e-02	ci left: 1.199285e-01	ci right 1.274112e-01	k: 3709	n:30000
Cons ci ratio: 5.412083e-03	ci left: 9.433141e-01	ci right 9.484658e-01	k: 28378	n:30000
KS ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
MDC1   30000 perm   11 sec   (2803 perm/sec)   p_kst 3.433333e-02   p_cons 9.459333e-01   p_joint 1.236333e-01

Joint ci ratio: 5.288270e-02	ci left: 1.175720e-01	ci right 1.239832e-01	k: 4830	n:40000
Cons ci ratio: 4.675641e-03	ci left: 9.439184e-01	ci right 9.483666e-01	k: 37847	n:40000
KS ci ratio: 1.031447e-01	ci left: 3.304967e-02	ci right 3.666826e-02	k: 1393	n:40000
MDC1   40000 perm   15 sec   (2740 perm/sec)   p_kst 3.482500e-02   p_cons 9.461750e-01   p_joint 1.207500e-01

Joint ci ratio: 4.823460e-02	ci left: 1.138585e-01	ci right 1.195060e-01	k: 5833	n:50000
Cons ci ratio: 4.168513e-03	ci left: 9.444915e-01	ci right 9.484565e-01	k: 47325	n:50000
KS ci ratio: 9.237933e-02	ci left: 3.315197e-02	ci right 3.638234e-02	k: 1737	n:50000
MDC1   50000 perm   19 sec   (2693 perm/sec)   p_kst 3.474000e-02   p_cons 9.465000e-01   p_joint 1.166600e-01

Outputting figure to mutsig2_images.part000000000103/MDC1.17_6326_50000_0.03474_0.9465_0.11666.png
                gene_name: MDC1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 3 percent done.
MDGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KS ci ratio: 4.337666e-01	ci left: 6.348452e-03	ci right 9.946939e-03	k: 80	n:10000
MDGA2   10000 perm   3 sec   (3945 perm/sec)   p_kst 8.000000e-03   p_cons 1.410000e-02   p_joint 9.200000e-03

Joint ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
Cons ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
KS ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
MDGA2   20000 perm   6 sec   (3614 perm/sec)   p_kst 7.600000e-03   p_cons 1.125000e-02   p_joint 6.500000e-03

Joint ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
Cons ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
KS ci ratio: 2.463869e-01	ci left: 7.335823e-03	ci right 9.427729e-03	k: 250	n:30000
MDGA2   30000 perm   9 sec   (3472 perm/sec)   p_kst 8.333333e-03   p_cons 1.313333e-02   p_joint 2.300000e-03

Joint ci ratio: 4.749597e-01	ci left: 1.298331e-03	ci right 2.126710e-03	k: 67	n:40000
Cons ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
KS ci ratio: 2.119985e-01	ci left: 7.576304e-03	ci right 9.396133e-03	k: 338	n:40000
MDGA2   40000 perm   12 sec   (3376 perm/sec)   p_kst 8.450000e-03   p_cons 1.297500e-02   p_joint 1.675000e-03

Joint ci ratio: 3.217416e-01	ci left: 2.484493e-03	ci right 3.454640e-03	k: 147	n:50000
Cons ci ratio: 1.710055e-01	ci left: 9.510141e-03	ci right 1.130738e-02	k: 519	n:50000
KS ci ratio: 1.886658e-01	ci left: 7.752087e-03	ci right 9.385738e-03	k: 427	n:50000
MDGA2   50000 perm   15 sec   (3302 perm/sec)   p_kst 8.540000e-03   p_cons 1.038000e-02   p_joint 2.940000e-03

Joint ci ratio: 2.080242e-01	ci left: 5.271264e-03	ci right 6.510597e-03	k: 352	n:60000
Cons ci ratio: 1.551046e-01	ci left: 9.715840e-03	ci right 1.136535e-02	k: 631	n:60000
KS ci ratio: 1.706595e-01	ci left: 7.972428e-03	ci right 9.475671e-03	k: 522	n:60000
MDGA2   60000 perm   19 sec   (3243 perm/sec)   p_kst 8.700000e-03   p_cons 1.051667e-02   p_joint 5.866667e-03

Joint ci ratio: 1.930258e-01	ci left: 5.291679e-03	ci right 6.435580e-03	k: 409	n:70000
Cons ci ratio: 1.427536e-01	ci left: 9.895892e-03	ci right 1.143079e-02	k: 745	n:70000
KS ci ratio: 1.582840e-01	ci left: 7.997876e-03	ci right 9.386168e-03	k: 607	n:70000
MDGA2   70000 perm   22 sec   (3193 perm/sec)   p_kst 8.671429e-03   p_cons 1.064286e-02   p_joint 5.842857e-03

Joint ci ratio: 1.880900e-01	ci left: 4.892003e-03	ci right 5.919367e-03	k: 431	n:80000
Cons ci ratio: 1.339770e-01	ci left: 9.877724e-03	ci right 1.130810e-02	k: 846	n:80000
KS ci ratio: 1.477246e-01	ci left: 8.080133e-03	ci right 9.380870e-03	k: 697	n:80000
MDGA2   80000 perm   25 sec   (3141 perm/sec)   p_kst 8.712500e-03   p_cons 1.057500e-02   p_joint 5.387500e-03

Joint ci ratio: 1.883661e-01	ci left: 4.337740e-03	ci right 5.250184e-03	k: 430	n:90000
Cons ci ratio: 1.262396e-01	ci left: 9.930430e-03	ci right 1.127917e-02	k: 953	n:90000
KS ci ratio: 1.385879e-01	ci left: 8.200150e-03	ci right 9.431822e-03	k: 792	n:90000
MDGA2   90000 perm   29 sec   (3093 perm/sec)   p_kst 8.800000e-03   p_cons 1.058889e-02   p_joint 4.777778e-03

Joint ci ratio: 2.050885e-01	ci left: 3.266715e-03	ci right 4.022525e-03	k: 363	n:100000
Cons ci ratio: 1.202786e-01	ci left: 9.877471e-03	ci right 1.115116e-02	k: 1050	n:100000
KS ci ratio: 1.317109e-01	ci left: 8.201406e-03	ci right 9.367354e-03	k: 877	n:100000
MDGA2   100000 perm   33 sec   (3050 perm/sec)   p_kst 8.770000e-03   p_cons 1.050000e-02   p_joint 3.630000e-03

Joint ci ratio: 2.339654e-01	ci left: 2.247763e-03	ci right 2.851669e-03	k: 279	n:110000
Cons ci ratio: 1.139906e-01	ci left: 1.002970e-02	ci right 1.125085e-02	k: 1169	n:110000
KS ci ratio: 1.248532e-01	ci left: 8.326988e-03	ci right 9.444591e-03	k: 976	n:110000
MDGA2   110000 perm   37 sec   (3004 perm/sec)   p_kst 8.872727e-03   p_cons 1.062727e-02   p_joint 2.536364e-03

Joint ci ratio: 2.307099e-01	ci left: 2.123220e-03	ci right 2.684593e-03	k: 287	n:120000
Cons ci ratio: 1.095883e-01	ci left: 9.971508e-03	ci right 1.113566e-02	k: 1265	n:120000
KS ci ratio: 1.200399e-01	ci left: 8.279310e-03	ci right 9.344631e-03	k: 1056	n:120000
MDGA2   120000 perm   41 sec   (2961 perm/sec)   p_kst 8.800000e-03   p_cons 1.054167e-02   p_joint 2.391667e-03

Joint ci ratio: 2.361338e-01	ci left: 1.865712e-03	ci right 2.372292e-03	k: 274	n:130000
Cons ci ratio: 1.047310e-01	ci left: 1.010285e-02	ci right 1.122683e-02	k: 1385	n:130000
KS ci ratio: 1.146299e-01	ci left: 8.404065e-03	ci right 9.433405e-03	k: 1158	n:130000
MDGA2   130000 perm   45 sec   (2920 perm/sec)   p_kst 8.907692e-03   p_cons 1.065385e-02   p_joint 2.107692e-03

Joint ci ratio: 1.702735e-01	ci left: 3.450250e-03	ci right 4.099141e-03	k: 527	n:140000
Cons ci ratio: 1.006699e-01	ci left: 1.017461e-02	ci right 1.126009e-02	k: 1499	n:140000
KS ci ratio: 1.100232e-01	ci left: 8.491074e-03	ci right 9.486565e-03	k: 1257	n:140000
MDGA2   140000 perm   49 sec   (2884 perm/sec)   p_kst 8.978571e-03   p_cons 1.070714e-02   p_joint 3.764286e-03

Joint ci ratio: 1.671474e-01	ci left: 3.347921e-03	ci right 3.964842e-03	k: 547	n:150000
Cons ci ratio: 9.723021e-02	ci left: 1.019849e-02	ci right 1.124722e-02	k: 1607	n:150000
KS ci ratio: 1.064463e-01	ci left: 8.482814e-03	ci right 9.442978e-03	k: 1343	n:150000
MDGA2   150000 perm   53 sec   (2845 perm/sec)   p_kst 8.953333e-03   p_cons 1.071333e-02   p_joint 3.646667e-03

Joint ci ratio: 1.664065e-01	ci left: 3.168597e-03	ci right 3.749625e-03	k: 552	n:160000
Cons ci ratio: 9.409287e-02	ci left: 1.022604e-02	ci right 1.124180e-02	k: 1716	n:160000
KS ci ratio: 1.033064e-01	ci left: 8.457776e-03	ci right 9.385151e-03	k: 1426	n:160000
MDGA2   160000 perm   57 sec   (2809 perm/sec)   p_kst 8.912500e-03   p_cons 1.072500e-02   p_joint 3.450000e-03

Joint ci ratio: 1.649340e-01	ci left: 3.038576e-03	ci right 3.590341e-03	k: 562	n:170000
Cons ci ratio: 9.121562e-02	ci left: 1.025658e-02	ci right 1.124256e-02	k: 1826	n:170000
KS ci ratio: 1.004625e-01	ci left: 8.430315e-03	ci right 9.327730e-03	k: 1508	n:170000
MDGA2   170000 perm   61 sec   (2776 perm/sec)   p_kst 8.870588e-03   p_cons 1.074118e-02   p_joint 3.305882e-03

Joint ci ratio: 1.623659e-01	ci left: 2.965662e-03	ci right 3.494982e-03	k: 580	n:180000
Cons ci ratio: 8.872615e-02	ci left: 1.025155e-02	ci right 1.120875e-02	k: 1930	n:180000
KS ci ratio: 9.728751e-02	ci left: 8.503798e-03	ci right 9.378794e-03	k: 1608	n:180000
MDGA2   180000 perm   66 sec   (2742 perm/sec)   p_kst 8.933333e-03   p_cons 1.072222e-02   p_joint 3.222222e-03

Joint ci ratio: 1.583306e-01	ci left: 2.961133e-03	ci right 3.475261e-03	k: 610	n:190000
Cons ci ratio: 8.655906e-02	ci left: 1.021647e-02	ci right 1.114592e-02	k: 2028	n:190000
KS ci ratio: 9.447934e-02	ci left: 8.554525e-03	ci right 9.407926e-03	k: 1705	n:190000
MDGA2   190000 perm   70 sec   (2711 perm/sec)   p_kst 8.973684e-03   p_cons 1.067368e-02   p_joint 3.210526e-03

Joint ci ratio: 1.587348e-01	ci left: 2.798653e-03	ci right 3.285928e-03	k: 607	n:200000
Cons ci ratio: 8.426352e-02	ci left: 1.025369e-02	ci right 1.116057e-02	k: 2140	n:200000
KS ci ratio: 9.200413e-02	ci left: 8.580961e-03	ci right 9.413364e-03	k: 1798	n:200000
MDGA2   200000 perm   75 sec   (2683 perm/sec)   p_kst 8.990000e-03   p_cons 1.070000e-02   p_joint 3.035000e-03

Joint ci ratio: 1.802293e-01	ci left: 2.045049e-03	ci right 2.454599e-03	k: 471	n:210000
Cons ci ratio: 8.221522e-02	ci left: 1.026901e-02	ci right 1.115410e-02	k: 2248	n:210000
KS ci ratio: 9.048919e-02	ci left: 8.456166e-03	ci right 9.262241e-03	k: 1859	n:210000
MDGA2   210000 perm   79 sec   (2653 perm/sec)   p_kst 8.852381e-03   p_cons 1.070476e-02   p_joint 2.242857e-03

Joint ci ratio: 1.767092e-01	ci left: 2.034597e-03	ci right 2.433245e-03	k: 490	n:220000
Cons ci ratio: 8.056894e-02	ci left: 1.021634e-02	ci right 1.107844e-02	k: 2341	n:220000
KS ci ratio: 8.828472e-02	ci left: 8.489523e-03	ci right 9.278044e-03	k: 1953	n:220000
MDGA2   220000 perm   84 sec   (2623 perm/sec)   p_kst 8.877273e-03   p_cons 1.064091e-02   p_joint 2.227273e-03

Joint ci ratio: 1.739009e-01	ci left: 2.012647e-03	ci right 2.400069e-03	k: 506	n:230000
Cons ci ratio: 7.878911e-02	ci left: 1.022811e-02	ci right 1.107125e-02	k: 2448	n:230000
KS ci ratio: 8.640432e-02	ci left: 8.486158e-03	ci right 9.256731e-03	k: 2039	n:230000
MDGA2   230000 perm   89 sec   (2594 perm/sec)   p_kst 8.865217e-03   p_cons 1.064348e-02   p_joint 2.200000e-03

Joint ci ratio: 1.564699e-01	ci left: 2.404214e-03	ci right 2.816278e-03	k: 625	n:240000
Cons ci ratio: 7.680398e-02	ci left: 1.032491e-02	ci right 1.115363e-02	k: 2576	n:240000
KS ci ratio: 8.441910e-02	ci left: 8.528109e-03	ci right 9.283823e-03	k: 2136	n:240000
MDGA2   240000 perm   94 sec   (2565 perm/sec)   p_kst 8.900000e-03   p_cons 1.073333e-02   p_joint 2.604167e-03

Joint ci ratio: 1.587832e-01	ci left: 2.238870e-03	ci right 2.628808e-03	k: 607	n:250000
Cons ci ratio: 7.535694e-02	ci left: 1.030430e-02	ci right 1.111510e-02	k: 2676	n:250000
KS ci ratio: 8.224953e-02	ci left: 8.633501e-03	ci right 9.377949e-03	k: 2250	n:250000
MDGA2   250000 perm   99 sec   (2535 perm/sec)   p_kst 9.000000e-03   p_cons 1.070400e-02   p_joint 2.428000e-03

Joint ci ratio: 1.572429e-01	ci left: 2.197085e-03	ci right 2.575683e-03	k: 619	n:260000
Cons ci ratio: 7.381428e-02	ci left: 1.033450e-02	ci right 1.113031e-02	k: 2789	n:260000
KS ci ratio: 8.060090e-02	ci left: 8.651855e-03	ci right 9.382229e-03	k: 2343	n:260000
MDGA2   260000 perm   104 sec   (2505 perm/sec)   p_kst 9.011538e-03   p_cons 1.072692e-02   p_joint 2.380769e-03

Joint ci ratio: 1.568699e-01	ci left: 2.126380e-03	ci right 2.491842e-03	k: 622	n:270000
Cons ci ratio: 7.231229e-02	ci left: 1.037716e-02	ci right 1.115932e-02	k: 2906	n:270000
KS ci ratio: 7.934382e-02	ci left: 8.603630e-03	ci right 9.318081e-03	k: 2418	n:270000
MDGA2   270000 perm   109 sec   (2476 perm/sec)   p_kst 8.955556e-03   p_cons 1.076296e-02   p_joint 2.303704e-03

Joint ci ratio: 1.542916e-01	ci left: 2.122517e-03	ci right 2.480766e-03	k: 643	n:280000
Cons ci ratio: 7.092212e-02	ci left: 1.040991e-02	ci right 1.117883e-02	k: 3021	n:280000
KS ci ratio: 7.798615e-02	ci left: 8.593955e-03	ci right 9.294837e-03	k: 2503	n:280000
MDGA2   280000 perm   114 sec   (2448 perm/sec)   p_kst 8.939286e-03   p_cons 1.078929e-02   p_joint 2.296429e-03

Joint ci ratio: 1.537009e-01	ci left: 2.065899e-03	ci right 2.413133e-03	k: 648	n:290000
Cons ci ratio: 6.982323e-02	ci left: 1.037615e-02	ci right 1.113022e-02	k: 3117	n:290000
KS ci ratio: 7.671082e-02	ci left: 8.581662e-03	ci right 9.269585e-03	k: 2587	n:290000
MDGA2   290000 perm   120 sec   (2422 perm/sec)   p_kst 8.920690e-03   p_cons 1.074828e-02   p_joint 2.234483e-03

Joint ci ratio: 1.324785e-01	ci left: 2.717173e-03	ci right 3.105862e-03	k: 872	n:300000
Cons ci ratio: 6.870908e-02	ci left: 1.036439e-02	ci right 1.110511e-02	k: 3219	n:300000
KS ci ratio: 7.483482e-02	ci left: 8.724023e-03	ci right 9.405511e-03	k: 2718	n:300000
MDGA2   300000 perm   125 sec   (2395 perm/sec)   p_kst 9.060000e-03   p_cons 1.073000e-02   p_joint 2.906667e-03

Joint ci ratio: 1.307684e-01	ci left: 2.701271e-03	ci right 3.082310e-03	k: 895	n:310000
Cons ci ratio: 6.755417e-02	ci left: 1.038202e-02	ci right 1.111104e-02	k: 3330	n:310000
KS ci ratio: 7.362629e-02	ci left: 8.727537e-03	ci right 9.397818e-03	k: 2808	n:310000
MDGA2   310000 perm   131 sec   (2370 perm/sec)   p_kst 9.058065e-03   p_cons 1.074194e-02   p_joint 2.887097e-03

Joint ci ratio: 1.289822e-01	ci left: 2.692442e-03	ci right 3.066650e-03	k: 920	n:320000
Cons ci ratio: 6.634852e-02	ci left: 1.043246e-02	ci right 1.115144e-02	k: 3452	n:320000
KS ci ratio: 7.246187e-02	ci left: 8.733983e-03	ci right 9.393704e-03	k: 2899	n:320000
MDGA2   320000 perm   136 sec   (2346 perm/sec)   p_kst 9.059375e-03   p_cons 1.078750e-02   p_joint 2.875000e-03

Joint ci ratio: 1.263991e-01	ci left: 2.722329e-03	ci right 3.092546e-03	k: 958	n:330000
Cons ci ratio: 6.529757e-02	ci left: 1.045013e-02	ci right 1.115850e-02	k: 3564	n:330000
KS ci ratio: 7.111147e-02	ci left: 8.799653e-03	ci right 9.451435e-03	k: 3010	n:330000
MDGA2   330000 perm   142 sec   (2322 perm/sec)   p_kst 9.121212e-03   p_cons 1.080000e-02   p_joint 2.903030e-03

Joint ci ratio: 1.289230e-01	ci left: 2.536897e-03	ci right 2.889311e-03	k: 921	n:340000
Cons ci ratio: 6.449928e-02	ci left: 1.040029e-02	ci right 1.109633e-02	k: 3653	n:340000
KS ci ratio: 7.008348e-02	ci left: 8.797983e-03	ci right 9.439838e-03	k: 3099	n:340000
MDGA2   340000 perm   148 sec   (2299 perm/sec)   p_kst 9.114706e-03   p_cons 1.074412e-02   p_joint 2.708824e-03

Joint ci ratio: 1.309367e-01	ci left: 2.387002e-03	ci right 2.724175e-03	k: 893	n:350000
Cons ci ratio: 6.354959e-02	ci left: 1.041239e-02	ci right 1.109860e-02	k: 3763	n:350000
KS ci ratio: 6.907696e-02	ci left: 8.802088e-03	ci right 9.434651e-03	k: 3190	n:350000
MDGA2   350000 perm   154 sec   (2276 perm/sec)   p_kst 9.114286e-03   p_cons 1.075143e-02   p_joint 2.551429e-03

Joint ci ratio: 1.216129e-01	ci left: 2.702723e-03	ci right 3.055354e-03	k: 1035	n:360000
Cons ci ratio: 6.257537e-02	ci left: 1.044577e-02	ci right 1.112325e-02	k: 3881	n:360000
KS ci ratio: 6.806030e-02	ci left: 8.819683e-03	ci right 9.443812e-03	k: 3286	n:360000
MDGA2   360000 perm   160 sec   (2252 perm/sec)   p_kst 9.127778e-03   p_cons 1.078056e-02   p_joint 2.875000e-03

Joint ci ratio: 1.206292e-01	ci left: 2.674228e-03	ci right 3.020118e-03	k: 1052	n:370000
Cons ci ratio: 6.182456e-02	ci left: 1.041621e-02	ci right 1.108338e-02	k: 3976	n:370000
KS ci ratio: 6.703726e-02	ci left: 8.849680e-03	ci right 9.466153e-03	k: 3387	n:370000
MDGA2   370000 perm   166 sec   (2231 perm/sec)   p_kst 9.154054e-03   p_cons 1.074595e-02   p_joint 2.843243e-03

Joint ci ratio: 1.189465e-01	ci left: 2.680436e-03	ci right 3.021952e-03	k: 1082	n:380000
Cons ci ratio: 6.109255e-02	ci left: 1.039085e-02	ci right 1.104823e-02	k: 4072	n:380000
KS ci ratio: 6.594465e-02	ci left: 8.909226e-03	ci right 9.519345e-03	k: 3500	n:380000
MDGA2   380000 perm   172 sec   (2210 perm/sec)   p_kst 9.210526e-03   p_cons 1.071579e-02   p_joint 2.847368e-03

Joint ci ratio: 1.178109e-01	ci left: 2.663957e-03	ci right 2.999908e-03	k: 1103	n:390000
Cons ci ratio: 6.040059e-02	ci left: 1.036177e-02	ci right 1.100963e-02	k: 4166	n:390000
KS ci ratio: 6.502190e-02	ci left: 8.933000e-03	ci right 9.535864e-03	k: 3600	n:390000
MDGA2   390000 perm   178 sec   (2189 perm/sec)   p_kst 9.230769e-03   p_cons 1.068205e-02   p_joint 2.828205e-03

Joint ci ratio: 1.171256e-01	ci left: 2.628900e-03	ci right 2.958368e-03	k: 1116	n:400000
Cons ci ratio: 5.953421e-02	ci left: 1.040316e-02	ci right 1.104395e-02	k: 4288	n:400000
KS ci ratio: 6.429483e-02	ci left: 8.911357e-03	ci right 9.505785e-03	k: 3682	n:400000
MDGA2   400000 perm   184 sec   (2169 perm/sec)   p_kst 9.205000e-03   p_cons 1.072000e-02   p_joint 2.790000e-03

Joint ci ratio: 1.196252e-01	ci left: 2.455894e-03	ci right 2.770713e-03	k: 1070	n:410000
Cons ci ratio: 5.879170e-02	ci left: 1.041135e-02	ci right 1.104438e-02	k: 4397	n:410000
KS ci ratio: 6.346414e-02	ci left: 8.926815e-03	ci right 9.514299e-03	k: 3779	n:410000
MDGA2   410000 perm   191 sec   (2149 perm/sec)   p_kst 9.217073e-03   p_cons 1.072439e-02   p_joint 2.609756e-03

Joint ci ratio: 1.180374e-01	ci left: 2.464416e-03	ci right 2.775842e-03	k: 1099	n:420000
Cons ci ratio: 5.812848e-02	ci left: 1.040042e-02	ci right 1.102541e-02	k: 4498	n:420000
KS ci ratio: 6.261595e-02	ci left: 8.955648e-03	ci right 9.536867e-03	k: 3882	n:420000
MDGA2   420000 perm   197 sec   (2127 perm/sec)   p_kst 9.242857e-03   p_cons 1.070952e-02   p_joint 2.616667e-03

Joint ci ratio: 1.166667e-01	ci left: 2.465795e-03	ci right 2.773527e-03	k: 1125	n:430000
Cons ci ratio: 5.748720e-02	ci left: 1.039004e-02	ci right 1.100728e-02	k: 4599	n:430000
KS ci ratio: 6.189499e-02	ci left: 8.955711e-03	ci right 9.530001e-03	k: 3973	n:430000
MDGA2   430000 perm   204 sec   (2108 perm/sec)   p_kst 9.239535e-03   p_cons 1.069535e-02   p_joint 2.616279e-03

Joint ci ratio: 1.152925e-01	ci left: 2.469338e-03	ci right 2.773635e-03	k: 1152	n:440000
Cons ci ratio: 5.687281e-02	ci left: 1.037792e-02	ci right 1.098764e-02	k: 4699	n:440000
KS ci ratio: 6.109983e-02	ci left: 8.984905e-03	ci right 9.553404e-03	k: 4077	n:440000
MDGA2   440000 perm   211 sec   (2089 perm/sec)   p_kst 9.265909e-03   p_cons 1.067955e-02   p_joint 2.618182e-03

Joint ci ratio: 1.153963e-01	ci left: 2.410143e-03	ci right 2.707431e-03	k: 1150	n:450000
Cons ci ratio: 5.626585e-02	ci left: 1.037076e-02	ci right 1.097335e-02	k: 4801	n:450000
KS ci ratio: 6.040750e-02	ci left: 8.990957e-03	ci right 9.553167e-03	k: 4171	n:450000
MDGA2   450000 perm   217 sec   (2069 perm/sec)   p_kst 9.268889e-03   p_cons 1.066889e-02   p_joint 2.555556e-03

Joint ci ratio: 1.141632e-01	ci left: 2.410536e-03	ci right 2.704481e-03	k: 1175	n:460000
Cons ci ratio: 5.570088e-02	ci left: 1.035537e-02	ci right 1.095082e-02	k: 4899	n:460000
KS ci ratio: 5.978063e-02	ci left: 8.983930e-03	ci right 9.539669e-03	k: 4259	n:460000
MDGA2   460000 perm   224 sec   (2050 perm/sec)   p_kst 9.258696e-03   p_cons 1.065000e-02   p_joint 2.554348e-03

Joint ci ratio: 1.131105e-01	ci left: 2.404726e-03	ci right 2.695078e-03	k: 1197	n:470000
Cons ci ratio: 5.505803e-02	ci left: 1.037633e-02	ci right 1.096589e-02	k: 5014	n:470000
KS ci ratio: 5.911115e-02	ci left: 8.996099e-03	ci right 9.546146e-03	k: 4356	n:470000
MDGA2   470000 perm   231 sec   (2033 perm/sec)   p_kst 9.268085e-03   p_cons 1.066809e-02   p_joint 2.546809e-03

Joint ci ratio: 1.127837e-01	ci left: 2.368796e-03	ci right 2.653928e-03	k: 1204	n:480000
Cons ci ratio: 5.456610e-02	ci left: 1.034714e-02	ci right 1.092962e-02	k: 5105	n:480000
KS ci ratio: 5.858329e-02	ci left: 8.970838e-03	ci right 9.514277e-03	k: 4435	n:480000
MDGA2   480000 perm   238 sec   (2015 perm/sec)   p_kst 9.239583e-03   p_cons 1.063542e-02   p_joint 2.508333e-03

Joint ci ratio: 1.116772e-01	ci left: 2.368058e-03	ci right 2.650121e-03	k: 1228	n:490000
Cons ci ratio: 5.393523e-02	ci left: 1.037756e-02	ci right 1.095478e-02	k: 5225	n:490000
KS ci ratio: 5.806930e-02	ci left: 8.946630e-03	ci right 9.483687e-03	k: 4514	n:490000
MDGA2   490000 perm   245 sec   (1998 perm/sec)   p_kst 9.212245e-03   p_cons 1.066327e-02   p_joint 2.506122e-03

Joint ci ratio: 1.131192e-01	ci left: 2.260433e-03	ci right 2.533384e-03	k: 1197	n:500000
Cons ci ratio: 5.185536e-02	ci left: 1.100688e-02	ci right 1.159480e-02	k: 5649	n:500000
KS ci ratio: 5.744255e-02	ci left: 8.962840e-03	ci right 9.494870e-03	k: 4613	n:500000
MDGA2   500000 perm   253 sec   (1979 perm/sec)   p_kst 9.226000e-03   p_cons 1.129800e-02   p_joint 2.394000e-03

Joint ci ratio: 1.122795e-01	ci left: 2.250409e-03	ci right 2.520000e-03	k: 1215	n:510000
Cons ci ratio: 5.138054e-02	ci left: 1.099428e-02	ci right 1.157599e-02	k: 5754	n:510000
KS ci ratio: 5.689662e-02	ci left: 8.959112e-03	ci right 9.485701e-03	k: 4702	n:510000
MDGA2   510000 perm   260 sec   (1963 perm/sec)   p_kst 9.219608e-03   p_cons 1.128235e-02   p_joint 2.382353e-03

Joint ci ratio: 1.114582e-01	ci left: 2.240778e-03	ci right 2.507122e-03	k: 1233	n:520000
Cons ci ratio: 5.088780e-02	ci left: 1.099549e-02	ci right 1.157152e-02	k: 5866	n:520000
KS ci ratio: 5.625941e-02	ci left: 8.989684e-03	ci right 9.511960e-03	k: 4809	n:520000
MDGA2   520000 perm   267 sec   (1947 perm/sec)   p_kst 9.248077e-03   p_cons 1.128077e-02   p_joint 2.371154e-03

Joint ci ratio: 1.037035e-01	ci left: 2.549212e-03	ci right 2.829853e-03	k: 1424	n:530000
Cons ci ratio: 5.034938e-02	ci left: 1.102276e-02	ci right 1.159393e-02	k: 5992	n:530000
KS ci ratio: 5.575196e-02	ci left: 8.983779e-03	ci right 9.500852e-03	k: 4897	n:530000
MDGA2   530000 perm   274 sec   (1931 perm/sec)   p_kst 9.239623e-03   p_cons 1.130566e-02   p_joint 2.686792e-03

Joint ci ratio: 1.033071e-01	ci left: 2.521846e-03	ci right 2.798348e-03	k: 1435	n:540000
Cons ci ratio: 4.991854e-02	ci left: 1.100881e-02	ci right 1.157423e-02	k: 6096	n:540000
KS ci ratio: 5.523006e-02	ci left: 8.987246e-03	ci right 9.499522e-03	k: 4990	n:540000
MDGA2   540000 perm   282 sec   (1914 perm/sec)   p_kst 9.240741e-03   p_cons 1.128889e-02   p_joint 2.657407e-03

Joint ci ratio: 1.050854e-01	ci left: 2.390987e-03	ci right 2.657933e-03	k: 1387	n:550000
Cons ci ratio: 4.951877e-02	ci left: 1.098641e-02	ci right 1.154603e-02	k: 6195	n:550000
KS ci ratio: 5.472799e-02	ci left: 8.988814e-03	ci right 9.496375e-03	k: 5082	n:550000
MDGA2   550000 perm   290 sec   (1898 perm/sec)   p_kst 9.240000e-03   p_cons 1.126364e-02   p_joint 2.521818e-03

Joint ci ratio: 1.002441e-01	ci left: 2.586668e-03	ci right 2.861374e-03	k: 1524	n:560000
Cons ci ratio: 4.909297e-02	ci left: 1.098070e-02	ci right 1.153509e-02	k: 6303	n:560000
KS ci ratio: 5.431356e-02	ci left: 8.965684e-03	ci right 9.467985e-03	k: 5160	n:560000
MDGA2   560000 perm   298 sec   (1882 perm/sec)   p_kst 9.214286e-03   p_cons 1.125536e-02   p_joint 2.721429e-03

Joint ci ratio: 9.933620e-02	ci left: 2.589185e-03	ci right 2.861523e-03	k: 1552	n:570000
Cons ci ratio: 4.857082e-02	ci left: 1.102374e-02	ci right 1.157422e-02	k: 6439	n:570000
KS ci ratio: 5.384102e-02	ci left: 8.965882e-03	ci right 9.463687e-03	k: 5251	n:570000
MDGA2   570000 perm   305 sec   (1866 perm/sec)   p_kst 9.212281e-03   p_cons 1.129649e-02   p_joint 2.722807e-03

Outputting figure to mutsig2_images.part000000000103/MDGA2.16_2939_570000_0.0092123_0.011296_0.0027228.png
                gene_name: MDGA2
               theta_stop: 0.099 
                    nperm: 570000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0090 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0029 

Current progress: 5 percent done.
MED12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
Cons ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
KS ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
MED12   10000 perm   3 sec   (3092 perm/sec)   p_kst 8.400000e-02   p_cons 1.073000e-01   p_joint 6.220000e-02

Joint ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
Cons ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
KS ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
MED12   20000 perm   7 sec   (2900 perm/sec)   p_kst 8.210000e-02   p_cons 1.059500e-01   p_joint 6.380000e-02

Joint ci ratio: 7.504489e-02	ci left: 8.022958e-02	ci right 8.651804e-02	k: 2500	n:30000
Cons ci ratio: 6.578364e-02	ci left: 1.023411e-01	ci right 1.093355e-01	k: 3174	n:30000
KS ci ratio: 7.569055e-02	ci left: 7.895200e-02	ci right 8.519588e-02	k: 2461	n:30000
MED12   30000 perm   11 sec   (2814 perm/sec)   p_kst 8.203333e-02   p_cons 1.058000e-01   p_joint 8.333333e-02

Outputting figure to mutsig2_images.part000000000103/MED12.14_6714_30000_0.082033_0.1058_0.083333.png
                gene_name: MED12
               theta_stop: 0.076 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 7 percent done.
MC5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
Cons ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
KS ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
MC5R   10000 perm   2 sec   (5353 perm/sec)   p_kst 9.309000e-01   p_cons 1.073000e-01   p_joint 3.455000e-01

Joint ci ratio: 4.844886e-02	ci left: 2.405889e-01	ci right 2.525849e-01	k: 4931	n:20000
Cons ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
KS ci ratio: 7.644461e-03	ci left: 9.257110e-01	ci right 9.328636e-01	k: 18587	n:20000
MC5R   20000 perm   4 sec   (4749 perm/sec)   p_kst 9.293500e-01   p_cons 1.042500e-01   p_joint 2.465500e-01

Outputting figure to mutsig2_images.part000000000103/MC5R.10_982_20000_0.92935_0.10425_0.24655.png
                gene_name: MC5R
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 8 percent done.
MCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
Cons ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
MCF2   10000 perm   2 sec   (4222 perm/sec)   p_kst 5.986000e-01   p_cons 9.525000e-01   p_joint 8.101000e-01

Outputting figure to mutsig2_images.part000000000103/MCF2.10_3201_10000_0.5986_0.9525_0.8101.png
                gene_name: MCF2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 10 percent done.
MCM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 1.039235e-02	ci left: 9.293697e-01	ci right 9.391755e-01	k: 9344	n:10000
KS ci ratio: 3.148575e-02	ci left: 5.981504e-01	ci right 6.173868e-01	k: 6078	n:10000
MCM6   10000 perm   2 sec   (4666 perm/sec)   p_kst 6.078000e-01   p_cons 9.344000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000103/MCM6.10_2534_10000_0.6078_0.9344_0.7387.png
                gene_name: MCM6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 12 percent done.
MED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
KS ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
MED1   10000 perm   3 sec   (3749 perm/sec)   p_kst 3.081000e-01   p_cons 1.985000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000103/MED1.10_4814_10000_0.3081_0.1985_0.3624.png
                gene_name: MED1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 14 percent done.
MC3R
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
Cons ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
KS ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
MC3R   10000 perm   2 sec   (5118 perm/sec)   p_kst 8.315000e-01   p_cons 3.027000e-01   p_joint 6.825000e-01

Outputting figure to mutsig2_images.part000000000103/MC3R.8_976_10000_0.8315_0.3027_0.6825.png
                gene_name: MC3R
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
MECOM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
Cons ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
KS ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
MECOM   10000 perm   2 sec   (4389 perm/sec)   p_kst 1.613000e-01   p_cons 3.394000e-01   p_joint 1.922000e-01

Outputting figure to mutsig2_images.part000000000103/MECOM.9_3798_10000_0.1613_0.3394_0.1922.png
                gene_name: MECOM
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
MBD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
MBD1   10000 perm   2 sec   (4665 perm/sec)   p_kst 3.900000e-01   p_cons 6.000000e-04   p_joint 4.500000e-03

Joint ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 3.523014e-02	ci left: 3.755577e-01	ci right 3.890765e-01	k: 7646	n:20000
MBD1   20000 perm   5 sec   (4165 perm/sec)   p_kst 3.823000e-01   p_cons 8.500000e-04   p_joint 1.490000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
KS ci ratio: 2.862868e-02	ci left: 3.790563e-01	ci right 3.900994e-01	k: 11537	n:30000
MBD1   30000 perm   8 sec   (3995 perm/sec)   p_kst 3.845667e-01   p_cons 8.000000e-04   p_joint 1.430000e-02

Joint ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
Cons ci ratio: 7.837452e-01	ci left: 3.844680e-04	ci right 8.926218e-04	k: 24	n:40000
KS ci ratio: 2.482066e-02	ci left: 3.792797e-01	ci right 3.888371e-01	k: 15362	n:40000
MBD1   40000 perm   10 sec   (3884 perm/sec)   p_kst 3.840500e-01   p_cons 6.000000e-04   p_joint 1.182500e-02

Joint ci ratio: 1.935128e-01	ci left: 7.352032e-03	ci right 8.945866e-03	k: 406	n:50000
Cons ci ratio: 6.119440e-01	ci left: 5.715913e-04	ci right 1.089215e-03	k: 40	n:50000
KS ci ratio: 2.211673e-02	ci left: 3.815699e-01	ci right 3.901234e-01	k: 19292	n:50000
MBD1   50000 perm   13 sec   (3795 perm/sec)   p_kst 3.858400e-01   p_cons 8.000000e-04   p_joint 8.120000e-03

Joint ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
Cons ci ratio: 5.541361e-01	ci left: 6.042337e-04	ci right 1.079535e-03	k: 49	n:60000
KS ci ratio: 2.014194e-02	ci left: 3.830667e-01	ci right 3.908776e-01	k: 23218	n:60000
MBD1   60000 perm   16 sec   (3715 perm/sec)   p_kst 3.869667e-01   p_cons 8.166667e-04   p_joint 1.203333e-02

Joint ci ratio: 1.761038e-01	ci left: 6.409400e-03	ci right 7.660559e-03	k: 491	n:70000
Cons ci ratio: 5.058493e-01	ci left: 6.416819e-04	ci right 1.087091e-03	k: 59	n:70000
KS ci ratio: 1.861631e-02	ci left: 3.841595e-01	ci right 3.913926e-01	k: 27144	n:70000
MBD1   70000 perm   19 sec   (3652 perm/sec)   p_kst 3.877714e-01   p_cons 8.428571e-04   p_joint 7.014286e-03

Joint ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
Cons ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
KS ci ratio: 1.738642e-02	ci left: 3.851453e-01	ci right 3.919128e-01	k: 31082	n:80000
MBD1   80000 perm   22 sec   (3586 perm/sec)   p_kst 3.885250e-01   p_cons 7.625000e-04   p_joint 4.800000e-03

Joint ci ratio: 1.845332e-01	ci left: 4.528446e-03	ci right 5.459455e-03	k: 448	n:90000
Cons ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
KS ci ratio: 1.639682e-02	ci left: 3.852028e-01	ci right 3.915822e-01	k: 34955	n:90000
MBD1   90000 perm   26 sec   (3527 perm/sec)   p_kst 3.883889e-01   p_cons 8.000000e-04   p_joint 4.977778e-03

Joint ci ratio: 1.868933e-01	ci left: 3.970606e-03	ci right 4.798546e-03	k: 437	n:100000
Cons ci ratio: 4.524706e-01	ci left: 5.811024e-04	ci right 9.289144e-04	k: 74	n:100000
KS ci ratio: 1.555997e-02	ci left: 3.852277e-01	ci right 3.912788e-01	k: 38825	n:100000
MBD1   100000 perm   29 sec   (3473 perm/sec)   p_kst 3.882500e-01   p_cons 7.400000e-04   p_joint 4.370000e-03

Joint ci ratio: 1.360466e-01	ci left: 6.981050e-03	ci right 8.008810e-03	k: 823	n:110000
Cons ci ratio: 4.586470e-01	ci left: 5.121757e-04	ci right 8.242217e-04	k: 72	n:110000
KS ci ratio: 1.483318e-02	ci left: 3.854547e-01	ci right 3.912240e-01	k: 42717	n:110000
MBD1   110000 perm   32 sec   (3422 perm/sec)   p_kst 3.883364e-01   p_cons 6.545455e-04   p_joint 7.481818e-03

Joint ci ratio: 1.402635e-01	ci left: 6.012905e-03	ci right 6.927858e-03	k: 775	n:120000
Cons ci ratio: 4.465803e-01	ci left: 4.990261e-04	ci right 7.926479e-04	k: 76	n:120000
KS ci ratio: 1.419483e-02	ci left: 3.858074e-01	ci right 3.913313e-01	k: 46628	n:120000
MBD1   120000 perm   36 sec   (3372 perm/sec)   p_kst 3.885667e-01   p_cons 6.333333e-04   p_joint 6.458333e-03

Joint ci ratio: 1.370493e-01	ci left: 5.825076e-03	ci right 6.689477e-03	k: 812	n:130000
Cons ci ratio: 4.225630e-01	ci left: 5.223014e-04	ci right 8.084284e-04	k: 85	n:130000
KS ci ratio: 1.366265e-02	ci left: 3.850578e-01	ci right 3.903626e-01	k: 50402	n:130000
MBD1   130000 perm   39 sec   (3323 perm/sec)   p_kst 3.877077e-01   p_cons 6.538462e-04   p_joint 6.246154e-03

Joint ci ratio: 1.462243e-01	ci left: 4.733580e-03	ci right 5.487141e-03	k: 714	n:140000
Cons ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
KS ci ratio: 1.316371e-02	ci left: 3.852251e-01	ci right 3.903367e-01	k: 54289	n:140000
MBD1   140000 perm   43 sec   (3277 perm/sec)   p_kst 3.877786e-01   p_cons 6.785714e-04   p_joint 5.100000e-03

Joint ci ratio: 1.426838e-01	ci left: 4.649319e-03	ci right 5.370018e-03	k: 750	n:150000
Cons ci ratio: 3.806082e-01	ci left: 5.725652e-04	ci right 8.473302e-04	k: 105	n:150000
KS ci ratio: 1.271643e-02	ci left: 3.853464e-01	ci right 3.902846e-01	k: 58172	n:150000
MBD1   150000 perm   46 sec   (3231 perm/sec)   p_kst 3.878133e-01   p_cons 7.000000e-04   p_joint 5.000000e-03

Joint ci ratio: 1.435732e-01	ci left: 4.304446e-03	ci right 4.976198e-03	k: 741	n:160000
Cons ci ratio: 3.719397e-01	ci left: 5.650742e-04	ci right 8.285649e-04	k: 110	n:160000
KS ci ratio: 1.232288e-02	ci left: 3.850306e-01	ci right 3.898109e-01	k: 61987	n:160000
MBD1   160000 perm   50 sec   (3176 perm/sec)   p_kst 3.874187e-01   p_cons 6.875000e-04   p_joint 4.631250e-03

Joint ci ratio: 1.432057e-01	ci left: 4.073893e-03	ci right 4.707897e-03	k: 745	n:170000
Cons ci ratio: 3.686389e-01	ci left: 5.425032e-04	ci right 7.926828e-04	k: 112	n:170000
KS ci ratio: 1.195943e-02	ci left: 3.849246e-01	ci right 3.895616e-01	k: 65831	n:170000
MBD1   170000 perm   54 sec   (3132 perm/sec)   p_kst 3.872412e-01   p_cons 6.588235e-04   p_joint 4.382353e-03

Joint ci ratio: 1.457969e-01	ci left: 3.708292e-03	ci right 4.296748e-03	k: 719	n:180000
Cons ci ratio: 3.592260e-01	ci left: 5.426498e-04	ci right 7.850132e-04	k: 118	n:180000
KS ci ratio: 1.162554e-02	ci left: 3.848655e-01	ci right 3.893715e-01	k: 69681	n:180000
MBD1   180000 perm   58 sec   (3092 perm/sec)   p_kst 3.871167e-01   p_cons 6.555556e-04   p_joint 3.994444e-03

Joint ci ratio: 1.461182e-01	ci left: 3.497878e-03	ci right 4.054273e-03	k: 716	n:190000
Cons ci ratio: 3.491046e-01	ci left: 5.476545e-04	ci right 7.838025e-04	k: 125	n:190000
KS ci ratio: 1.132064e-02	ci left: 3.847091e-01	ci right 3.890943e-01	k: 73511	n:190000
MBD1   190000 perm   62 sec   (3050 perm/sec)   p_kst 3.869000e-01   p_cons 6.578947e-04   p_joint 3.768421e-03

Joint ci ratio: 1.482213e-01	ci left: 3.226633e-03	ci right 3.747922e-03	k: 696	n:200000
Cons ci ratio: 3.436941e-01	ci left: 5.385315e-04	ci right 7.663465e-04	k: 129	n:200000
KS ci ratio: 1.103203e-02	ci left: 3.848496e-01	ci right 3.891237e-01	k: 77397	n:200000
MBD1   200000 perm   66 sec   (3008 perm/sec)   p_kst 3.869850e-01   p_cons 6.450000e-04   p_joint 3.480000e-03

Joint ci ratio: 1.461446e-01	ci left: 3.164707e-03	ci right 3.668202e-03	k: 716	n:210000
Cons ci ratio: 3.288471e-01	ci left: 5.652089e-04	ci right 7.917996e-04	k: 141	n:210000
KS ci ratio: 1.076269e-02	ci left: 3.850540e-01	ci right 3.892253e-01	k: 81299	n:210000
MBD1   210000 perm   71 sec   (2969 perm/sec)   p_kst 3.871381e-01   p_cons 6.714286e-04   p_joint 3.409524e-03

Joint ci ratio: 1.525885e-01	ci left: 2.762649e-03	ci right 3.223328e-03	k: 657	n:220000
Cons ci ratio: 3.232074e-01	ci left: 5.603848e-04	ci right 7.803900e-04	k: 146	n:220000
KS ci ratio: 1.051608e-02	ci left: 3.850639e-01	ci right 3.891391e-01	k: 85162	n:220000
MBD1   220000 perm   75 sec   (2927 perm/sec)   p_kst 3.871000e-01   p_cons 6.636364e-04   p_joint 2.986364e-03

Joint ci ratio: 1.498815e-01	ci left: 2.742930e-03	ci right 3.191480e-03	k: 681	n:230000
Cons ci ratio: 3.137440e-01	ci left: 5.720242e-04	ci right 7.887065e-04	k: 155	n:230000
KS ci ratio: 1.028192e-02	ci left: 3.852476e-01	ci right 3.892335e-01	k: 89065	n:230000
MBD1   230000 perm   80 sec   (2889 perm/sec)   p_kst 3.872391e-01   p_cons 6.739130e-04   p_joint 2.960870e-03

Joint ci ratio: 1.467933e-01	ci left: 2.744990e-03	ci right 3.183816e-03	k: 710	n:240000
Cons ci ratio: 3.059953e-01	ci left: 5.789322e-04	ci right 7.917600e-04	k: 163	n:240000
KS ci ratio: 1.006132e-02	ci left: 3.854836e-01	ci right 3.893858e-01	k: 92984	n:240000
MBD1   240000 perm   84 sec   (2851 perm/sec)   p_kst 3.874333e-01   p_cons 6.791667e-04   p_joint 2.958333e-03

Joint ci ratio: 1.455751e-01	ci left: 2.681429e-03	ci right 3.106226e-03	k: 722	n:250000
Cons ci ratio: 2.996668e-01	ci left: 5.816479e-04	ci right 7.902103e-04	k: 170	n:250000
KS ci ratio: 9.862145e-03	ci left: 3.853258e-01	ci right 3.891488e-01	k: 96809	n:250000
MBD1   250000 perm   89 sec   (2816 perm/sec)   p_kst 3.872360e-01   p_cons 6.800000e-04   p_joint 2.888000e-03

Joint ci ratio: 1.441900e-01	ci left: 2.630186e-03	ci right 3.042559e-03	k: 736	n:260000
Cons ci ratio: 2.945444e-01	ci left: 5.806340e-04	ci right 7.846096e-04	k: 176	n:260000
KS ci ratio: 9.672933e-03	ci left: 3.852501e-01	ci right 3.889985e-01	k: 100652	n:260000
MBD1   260000 perm   93 sec   (2782 perm/sec)   p_kst 3.871231e-01   p_cons 6.769231e-04   p_joint 2.830769e-03

Joint ci ratio: 9.340158e-02	ci left: 6.178634e-03	ci right 6.787588e-03	k: 1749	n:270000
Cons ci ratio: 2.757065e-01	ci left: 6.451110e-04	ci right 8.547345e-04	k: 201	n:270000
KS ci ratio: 9.491690e-03	ci left: 3.853065e-01	ci right 3.889848e-01	k: 104529	n:270000
MBD1   270000 perm   98 sec   (2748 perm/sec)   p_kst 3.871444e-01   p_cons 7.444444e-04   p_joint 6.477778e-03

Joint ci ratio: 9.370929e-02	ci left: 5.919565e-03	ci right 6.505012e-03	k: 1738	n:280000
Cons ci ratio: 2.710504e-01	ci left: 6.453579e-04	ci right 8.509176e-04	k: 208	n:280000
KS ci ratio: 9.318935e-03	ci left: 3.854273e-01	ci right 3.890394e-01	k: 108425	n:280000
MBD1   280000 perm   103 sec   (2715 perm/sec)   p_kst 3.872321e-01   p_cons 7.428571e-04   p_joint 6.207143e-03

Joint ci ratio: 9.334214e-02	ci left: 5.762567e-03	ci right 6.330132e-03	k: 1752	n:290000
Cons ci ratio: 2.653956e-01	ci left: 6.520524e-04	ci right 8.546915e-04	k: 217	n:290000
KS ci ratio: 9.152621e-03	ci left: 3.856781e-01	ci right 3.892276e-01	k: 112361	n:290000
MBD1   290000 perm   108 sec   (2682 perm/sec)   p_kst 3.874517e-01   p_cons 7.482759e-04   p_joint 6.041379e-03

Joint ci ratio: 9.776888e-02	ci left: 5.069319e-03	ci right 5.593640e-03	k: 1598	n:300000
Cons ci ratio: 2.578173e-01	ci left: 6.708106e-04	ci right 8.723686e-04	k: 230	n:300000
KS ci ratio: 8.995218e-03	ci left: 3.858960e-01	ci right 3.893862e-01	k: 116292	n:300000
MBD1   300000 perm   113 sec   (2651 perm/sec)   p_kst 3.876400e-01   p_cons 7.666667e-04   p_joint 5.326667e-03

Joint ci ratio: 9.716837e-02	ci left: 4.968724e-03	ci right 5.479303e-03	k: 1618	n:310000
Cons ci ratio: 2.556153e-01	ci left: 6.612441e-04	ci right 8.579600e-04	k: 234	n:310000
KS ci ratio: 8.848009e-03	ci left: 3.859746e-01	ci right 3.894081e-01	k: 120184	n:310000
MBD1   310000 perm   118 sec   (2622 perm/sec)   p_kst 3.876903e-01   p_cons 7.548387e-04   p_joint 5.219355e-03

Joint ci ratio: 9.981299e-02	ci left: 4.557368e-03	ci right 5.039168e-03	k: 1534	n:320000
Cons ci ratio: 2.488234e-01	ci left: 6.786386e-04	ci right 8.743349e-04	k: 247	n:320000
KS ci ratio: 8.703214e-03	ci left: 3.862986e-01	ci right 3.896784e-01	k: 124156	n:320000
MBD1   320000 perm   123 sec   (2591 perm/sec)   p_kst 3.879875e-01   p_cons 7.718750e-04   p_joint 4.793750e-03

Joint ci ratio: 1.135257e-01	ci left: 3.395567e-03	ci right 3.807165e-03	k: 1187	n:330000
Cons ci ratio: 2.449046e-01	ci left: 6.808167e-04	ci right 8.735789e-04	k: 255	n:330000
KS ci ratio: 8.566556e-03	ci left: 3.865337e-01	ci right 3.898622e-01	k: 128105	n:330000
MBD1   330000 perm   129 sec   (2563 perm/sec)   p_kst 3.881970e-01   p_cons 7.727273e-04   p_joint 3.596970e-03

Joint ci ratio: 1.138205e-01	ci left: 3.278541e-03	ci right 3.677054e-03	k: 1181	n:340000
Cons ci ratio: 2.425484e-01	ci left: 6.746002e-04	ci right 8.634880e-04	k: 260	n:340000
KS ci ratio: 8.442250e-03	ci left: 3.864115e-01	ci right 3.896904e-01	k: 131937	n:340000
MBD1   340000 perm   134 sec   (2535 perm/sec)   p_kst 3.880500e-01   p_cons 7.647059e-04   p_joint 3.473529e-03

Joint ci ratio: 1.136334e-01	ci left: 3.195964e-03	ci right 3.583759e-03	k: 1185	n:350000
Cons ci ratio: 2.384712e-01	ci left: 6.794910e-04	ci right 8.660776e-04	k: 269	n:350000
KS ci ratio: 8.316246e-03	ci left: 3.866935e-01	ci right 3.899255e-01	k: 135908	n:350000
MBD1   350000 perm   140 sec   (2509 perm/sec)   p_kst 3.883086e-01   p_cons 7.685714e-04   p_joint 3.385714e-03

Joint ci ratio: 1.121773e-01	ci left: 3.190866e-03	ci right 3.572752e-03	k: 1216	n:360000
Cons ci ratio: 2.350149e-01	ci left: 6.815205e-04	ci right 8.655576e-04	k: 277	n:360000
KS ci ratio: 8.199023e-03	ci left: 3.867686e-01	ci right 3.899555e-01	k: 139810	n:360000
MBD1   360000 perm   145 sec   (2482 perm/sec)   p_kst 3.883611e-01   p_cons 7.694444e-04   p_joint 3.377778e-03

Joint ci ratio: 1.016225e-01	ci left: 3.801796e-03	ci right 4.211437e-03	k: 1481	n:370000
Cons ci ratio: 2.321110e-01	ci left: 6.809129e-04	ci right 8.621882e-04	k: 284	n:370000
KS ci ratio: 8.083770e-03	ci left: 3.870073e-01	ci right 3.901512e-01	k: 143774	n:370000
MBD1   370000 perm   151 sec   (2456 perm/sec)   p_kst 3.885784e-01   p_cons 7.675676e-04   p_joint 4.002703e-03

Joint ci ratio: 1.019391e-01	ci left: 3.678656e-03	ci right 4.076337e-03	k: 1472	n:380000
Cons ci ratio: 2.301022e-01	ci left: 6.753901e-04	ci right 8.534177e-04	k: 289	n:380000
KS ci ratio: 7.975097e-03	ci left: 3.871234e-01	ci right 3.902257e-01	k: 147696	n:380000
MBD1   380000 perm   156 sec   (2431 perm/sec)   p_kst 3.886737e-01   p_cons 7.605263e-04   p_joint 3.873684e-03

Joint ci ratio: 1.003828e-01	ci left: 3.699298e-03	ci right 4.092745e-03	k: 1518	n:390000
Cons ci ratio: 2.281446e-01	ci left: 6.701568e-04	ci right 8.450907e-04	k: 294	n:390000
KS ci ratio: 7.874388e-03	ci left: 3.870108e-01	ci right 3.900729e-01	k: 151531	n:390000
MBD1   390000 perm   162 sec   (2407 perm/sec)   p_kst 3.885410e-01   p_cons 7.538462e-04   p_joint 3.892308e-03

Joint ci ratio: 9.895913e-02	ci left: 3.714075e-03	ci right 4.103166e-03	k: 1562	n:400000
Cons ci ratio: 2.251125e-01	ci left: 6.722677e-04	ci right 8.450968e-04	k: 302	n:400000
KS ci ratio: 7.779814e-03	ci left: 3.867568e-01	ci right 3.897799e-01	k: 155307	n:400000
MBD1   400000 perm   168 sec   (2383 perm/sec)   p_kst 3.882675e-01   p_cons 7.550000e-04   p_joint 3.905000e-03

Joint ci ratio: 9.820982e-02	ci left: 3.680578e-03	ci right 4.063072e-03	k: 1586	n:410000
Cons ci ratio: 2.236422e-01	ci left: 6.650784e-04	ci right 8.347886e-04	k: 306	n:410000
KS ci ratio: 7.680672e-03	ci left: 3.870028e-01	ci right 3.899891e-01	k: 159283	n:410000
MBD1   410000 perm   174 sec   (2359 perm/sec)   p_kst 3.884951e-01   p_cons 7.463415e-04   p_joint 3.868293e-03

Joint ci ratio: 9.750763e-02	ci left: 3.646363e-03	ci right 4.022438e-03	k: 1609	n:420000
Cons ci ratio: 2.204340e-01	ci left: 6.694802e-04	ci right 8.375308e-04	k: 315	n:420000
KS ci ratio: 7.591803e-03	ci left: 3.868257e-01	ci right 3.897759e-01	k: 163086	n:420000
MBD1   420000 perm   180 sec   (2334 perm/sec)   p_kst 3.883000e-01   p_cons 7.500000e-04   p_joint 3.830952e-03

Joint ci ratio: 9.942056e-02	ci left: 3.423177e-03	ci right 3.783563e-03	k: 1548	n:430000
Cons ci ratio: 2.183710e-01	ci left: 6.670976e-04	ci right 8.327726e-04	k: 321	n:430000
KS ci ratio: 7.501245e-03	ci left: 3.869545e-01	ci right 3.898703e-01	k: 167017	n:430000
MBD1   430000 perm   186 sec   (2311 perm/sec)   p_kst 3.884116e-01   p_cons 7.465116e-04   p_joint 3.600000e-03

Joint ci ratio: 1.028099e-01	ci left: 3.123826e-03	ci right 3.464585e-03	k: 1448	n:440000
Cons ci ratio: 2.157077e-01	ci left: 6.691299e-04	ci right 8.330145e-04	k: 329	n:440000
KS ci ratio: 7.415022e-03	ci left: 3.870026e-01	ci right 3.898852e-01	k: 170915	n:440000
MBD1   440000 perm   192 sec   (2288 perm/sec)   p_kst 3.884432e-01   p_cons 7.477273e-04   p_joint 3.290909e-03

Joint ci ratio: 1.021092e-01	ci left: 3.097711e-03	ci right 3.433180e-03	k: 1468	n:450000
Cons ci ratio: 2.128247e-01	ci left: 6.731873e-04	ci right 8.355744e-04	k: 338	n:450000
KS ci ratio: 7.332666e-03	ci left: 3.869867e-01	ci right 3.898370e-01	k: 174785	n:450000
MBD1   450000 perm   199 sec   (2264 perm/sec)   p_kst 3.884111e-01   p_cons 7.511111e-04   p_joint 3.262222e-03

Joint ci ratio: 1.016281e-01	ci left: 3.060026e-03	ci right 3.389759e-03	k: 1482	n:460000
Cons ci ratio: 2.109663e-01	ci left: 6.709040e-04	ci right 8.311445e-04	k: 344	n:460000
KS ci ratio: 7.251799e-03	ci left: 3.870498e-01	ci right 3.898690e-01	k: 178691	n:460000
MBD1   460000 perm   206 sec   (2238 perm/sec)   p_kst 3.884587e-01   p_cons 7.478261e-04   p_joint 3.221739e-03

Joint ci ratio: 1.018039e-01	ci left: 2.984545e-03	ci right 3.306734e-03	k: 1477	n:470000
Cons ci ratio: 2.082670e-01	ci left: 6.747734e-04	ci right 8.336131e-04	k: 353	n:470000
KS ci ratio: 7.175028e-03	ci left: 3.870126e-01	ci right 3.898015e-01	k: 182551	n:470000
MBD1   470000 perm   212 sec   (2217 perm/sec)   p_kst 3.884064e-01   p_cons 7.510638e-04   p_joint 3.142553e-03

Joint ci ratio: 1.021545e-01	ci left: 2.902059e-03	ci right 3.216487e-03	k: 1467	n:480000
Cons ci ratio: 2.053857e-01	ci left: 6.804702e-04	ci right 8.381567e-04	k: 363	n:480000
KS ci ratio: 7.102202e-03	ci left: 3.868730e-01	ci right 3.896325e-01	k: 186361	n:480000
MBD1   480000 perm   219 sec   (2197 perm/sec)   p_kst 3.882521e-01   p_cons 7.562500e-04   p_joint 3.056250e-03

Joint ci ratio: 1.009239e-01	ci left: 2.914438e-03	ci right 3.226178e-03	k: 1503	n:490000
Cons ci ratio: 2.020808e-01	ci left: 6.898239e-04	ci right 8.467884e-04	k: 375	n:490000
KS ci ratio: 7.027230e-03	ci left: 3.870309e-01	ci right 3.897622e-01	k: 190314	n:490000
MBD1   490000 perm   225 sec   (2177 perm/sec)   p_kst 3.883959e-01   p_cons 7.653061e-04   p_joint 3.067347e-03

Joint ci ratio: 1.038781e-01	ci left: 2.692435e-03	ci right 2.989373e-03	k: 1419	n:500000
Cons ci ratio: 1.999646e-01	ci left: 6.912222e-04	ci right 8.466568e-04	k: 383	n:500000
KS ci ratio: 6.957100e-03	ci left: 3.870107e-01	ci right 3.897146e-01	k: 194181	n:500000
MBD1   500000 perm   232 sec   (2158 perm/sec)   p_kst 3.883620e-01   p_cons 7.660000e-04   p_joint 2.838000e-03

Joint ci ratio: 1.029402e-01	ci left: 2.689304e-03	ci right 2.983056e-03	k: 1445	n:510000
Cons ci ratio: 1.986759e-01	ci left: 6.869833e-04	ci right 8.403485e-04	k: 388	n:510000
KS ci ratio: 6.887635e-03	ci left: 3.870875e-01	ci right 3.897647e-01	k: 198097	n:510000
MBD1   510000 perm   239 sec   (2138 perm/sec)   p_kst 3.884255e-01   p_cons 7.607843e-04   p_joint 2.833333e-03

Joint ci ratio: 1.026232e-01	ci left: 2.654447e-03	ci right 2.943445e-03	k: 1454	n:520000
Cons ci ratio: 1.969122e-01	ci left: 6.865670e-04	ci right 8.383153e-04	k: 395	n:520000
KS ci ratio: 6.820072e-03	ci left: 3.871710e-01	ci right 3.898225e-01	k: 202018	n:520000
MBD1   520000 perm   245 sec   (2119 perm/sec)   p_kst 3.884962e-01   p_cons 7.596154e-04   p_joint 2.796154e-03

Joint ci ratio: 1.044783e-01	ci left: 2.510618e-03	ci right 2.789202e-03	k: 1403	n:530000
Cons ci ratio: 1.937565e-01	ci left: 6.969420e-04	ci right 8.482239e-04	k: 408	n:530000
KS ci ratio: 6.754057e-03	ci left: 3.872799e-01	ci right 3.899063e-01	k: 205954	n:530000
MBD1   530000 perm   252 sec   (2100 perm/sec)   p_kst 3.885925e-01   p_cons 7.698113e-04   p_joint 2.647170e-03

Joint ci ratio: 8.671146e-02	ci left: 3.606835e-03	ci right 3.935561e-03	k: 2035	n:540000
Cons ci ratio: 1.930507e-01	ci left: 6.893220e-04	ci right 8.383407e-04	k: 411	n:540000
KS ci ratio: 6.690809e-03	ci left: 3.873218e-01	ci right 3.899238e-01	k: 209856	n:540000
MBD1   540000 perm   259 sec   (2082 perm/sec)   p_kst 3.886222e-01   p_cons 7.611111e-04   p_joint 3.768519e-03

Joint ci ratio: 8.587185e-02	ci left: 3.612415e-03	ci right 3.938301e-03	k: 2075	n:550000
Cons ci ratio: 1.918903e-01	ci left: 6.854416e-04	ci right 8.326267e-04	k: 416	n:550000
KS ci ratio: 6.631968e-03	ci left: 3.871716e-01	ci right 3.897496e-01	k: 213653	n:550000
MBD1   550000 perm   266 sec   (2064 perm/sec)   p_kst 3.884600e-01   p_cons 7.563636e-04   p_joint 3.772727e-03

Joint ci ratio: 8.736570e-02	ci left: 3.425601e-03	ci right 3.740284e-03	k: 2005	n:560000
Cons ci ratio: 1.902998e-01	ci left: 6.851035e-04	ci right 8.308557e-04	k: 423	n:560000
KS ci ratio: 6.570700e-03	ci left: 3.873123e-01	ci right 3.898674e-01	k: 217610	n:560000
MBD1   560000 perm   274 sec   (2046 perm/sec)   p_kst 3.885893e-01   p_cons 7.553571e-04   p_joint 3.580357e-03

Joint ci ratio: 8.767602e-02	ci left: 3.341472e-03	ci right 3.649573e-03	k: 1991	n:570000
Cons ci ratio: 1.894090e-01	ci left: 6.797680e-04	ci right 8.236302e-04	k: 427	n:570000
KS ci ratio: 6.513815e-03	ci left: 3.872501e-01	ci right 3.897826e-01	k: 221454	n:570000
MBD1   570000 perm   281 sec   (2029 perm/sec)   p_kst 3.885158e-01   p_cons 7.491228e-04   p_joint 3.492982e-03

Joint ci ratio: 8.763454e-02	ci left: 3.287229e-03	ci right 3.590178e-03	k: 1993	n:580000
Cons ci ratio: 1.883127e-01	ci left: 6.762609e-04	ci right 8.184577e-04	k: 432	n:580000
KS ci ratio: 6.456039e-03	ci left: 3.873625e-01	ci right 3.898731e-01	k: 225398	n:580000
MBD1   580000 perm   288 sec   (2011 perm/sec)   p_kst 3.886172e-01   p_cons 7.448276e-04   p_joint 3.436207e-03

Joint ci ratio: 8.706935e-02	ci left: 3.274618e-03	ci right 3.574359e-03	k: 2019	n:590000
Cons ci ratio: 1.870216e-01	ci left: 6.744905e-04	ci right 8.152323e-04	k: 438	n:590000
KS ci ratio: 6.401440e-03	ci left: 3.873475e-01	ci right 3.898367e-01	k: 229269	n:590000
MBD1   590000 perm   296 sec   (1993 perm/sec)   p_kst 3.885915e-01   p_cons 7.423729e-04   p_joint 3.422034e-03

Joint ci ratio: 8.720188e-02	ci left: 3.210254e-03	ci right 3.504574e-03	k: 2013	n:600000
Cons ci ratio: 1.853404e-01	ci left: 6.759609e-04	ci right 8.155991e-04	k: 446	n:600000
KS ci ratio: 6.349517e-03	ci left: 3.872348e-01	ci right 3.897030e-01	k: 233081	n:600000
MBD1   600000 perm   304 sec   (1975 perm/sec)   p_kst 3.884683e-01   p_cons 7.433333e-04   p_joint 3.355000e-03

Joint ci ratio: 8.634816e-02	ci left: 3.221779e-03	ci right 3.514117e-03	k: 2053	n:610000
Cons ci ratio: 1.841091e-01	ci left: 6.742608e-04	ci right 8.125191e-04	k: 452	n:610000
KS ci ratio: 6.298054e-03	ci left: 3.871848e-01	ci right 3.896326e-01	k: 236929	n:610000
MBD1   610000 perm   311 sec   (1958 perm/sec)   p_kst 3.884082e-01   p_cons 7.409836e-04   p_joint 3.365574e-03

Joint ci ratio: 8.950990e-02	ci left: 2.945798e-03	ci right 3.223394e-03	k: 1911	n:620000
Cons ci ratio: 1.827030e-01	ci left: 6.741576e-04	ci right 8.112221e-04	k: 459	n:620000
KS ci ratio: 6.248480e-03	ci left: 3.870866e-01	ci right 3.895145e-01	k: 240746	n:620000
MBD1   620000 perm   319 sec   (1942 perm/sec)   p_kst 3.883000e-01   p_cons 7.403226e-04   p_joint 3.082258e-03

Joint ci ratio: 8.879297e-02	ci left: 2.947149e-03	ci right 3.222532e-03	k: 1942	n:630000
Cons ci ratio: 1.805564e-01	ci left: 6.801234e-04	ci right 8.165986e-04	k: 470	n:630000
KS ci ratio: 6.199747e-03	ci left: 3.870154e-01	ci right 3.894238e-01	k: 244578	n:630000
MBD1   630000 perm   327 sec   (1925 perm/sec)   p_kst 3.882190e-01   p_cons 7.460317e-04   p_joint 3.082540e-03

Joint ci ratio: 8.804826e-02	ci left: 2.951522e-03	ci right 3.224882e-03	k: 1975	n:640000
Cons ci ratio: 1.782987e-01	ci left: 6.874046e-04	ci right 8.234301e-04	k: 482	n:640000
KS ci ratio: 6.149911e-03	ci left: 3.871182e-01	ci right 3.895078e-01	k: 248520	n:640000
MBD1   640000 perm   335 sec   (1909 perm/sec)   p_kst 3.883125e-01   p_cons 7.531250e-04   p_joint 3.085938e-03

Joint ci ratio: 8.970471e-02	ci left: 2.797797e-03	ci right 3.062049e-03	k: 1903	n:650000
Cons ci ratio: 1.773833e-01	ci left: 6.841789e-04	ci right 8.187965e-04	k: 487	n:650000
KS ci ratio: 6.102266e-03	ci left: 3.871395e-01	ci right 3.895107e-01	k: 252411	n:650000
MBD1   650000 perm   343 sec   (1893 perm/sec)   p_kst 3.883246e-01   p_cons 7.492308e-04   p_joint 2.927692e-03

Joint ci ratio: 8.657086e-02	ci left: 2.962863e-03	ci right 3.232436e-03	k: 2043	n:660000
Cons ci ratio: 1.655798e-01	ci left: 7.782300e-04	ci right 9.201496e-04	k: 559	n:660000
KS ci ratio: 6.055614e-03	ci left: 3.871679e-01	ci right 3.895210e-01	k: 256307	n:660000
MBD1   660000 perm   352 sec   (1877 perm/sec)   p_kst 3.883439e-01   p_cons 8.469697e-04   p_joint 3.095455e-03

Joint ci ratio: 1.007310e-01	ci left: 2.141596e-03	ci right 2.370204e-03	k: 1510	n:670000
Cons ci ratio: 1.952102e-01	ci left: 5.427889e-04	ci right 6.615982e-04	k: 402	n:670000
KS ci ratio: 6.011508e-03	ci left: 3.870776e-01	ci right 3.894130e-01	k: 260124	n:670000
MBD1   670000 perm   360 sec   (1862 perm/sec)   p_kst 3.882448e-01   p_cons 6.000000e-04   p_joint 2.253731e-03

Joint ci ratio: 1.038806e-01	ci left: 1.981126e-03	ci right 2.199621e-03	k: 1420	n:680000
Cons ci ratio: 1.949692e-01	ci left: 5.362052e-04	ci right 6.534113e-04	k: 403	n:680000
KS ci ratio: 5.967852e-03	ci left: 3.870297e-01	ci right 3.893478e-01	k: 263968	n:680000
MBD1   680000 perm   368 sec   (1847 perm/sec)   p_kst 3.881882e-01   p_cons 5.926471e-04   p_joint 2.088235e-03

Joint ci ratio: 9.641750e-02	ci left: 2.274600e-03	ci right 2.506421e-03	k: 1648	n:690000
Cons ci ratio: 1.928327e-01	ci left: 5.408446e-04	ci right 6.576173e-04	k: 412	n:690000
KS ci ratio: 5.924809e-03	ci left: 3.870093e-01	ci right 3.893105e-01	k: 267830	n:690000
MBD1   690000 perm   376 sec   (1833 perm/sec)   p_kst 3.881594e-01   p_cons 5.971014e-04   p_joint 2.388406e-03

Joint ci ratio: 9.552330e-02	ci left: 2.285329e-03	ci right 2.515963e-03	k: 1679	n:700000
Cons ci ratio: 1.907650e-01	ci left: 5.453581e-04	ci right 6.616964e-04	k: 421	n:700000
KS ci ratio: 5.882064e-03	ci left: 3.870395e-01	ci right 3.893242e-01	k: 271727	n:700000
MBD1   700000 perm   385 sec   (1820 perm/sec)   p_kst 3.881814e-01   p_cons 6.014286e-04   p_joint 2.398571e-03

Joint ci ratio: 9.521298e-02	ci left: 2.268264e-03	ci right 2.496390e-03	k: 1690	n:710000
Cons ci ratio: 1.889818e-01	ci left: 5.484092e-04	ci right 6.641792e-04	k: 429	n:710000
KS ci ratio: 5.841219e-03	ci left: 3.869888e-01	ci right 3.892572e-01	k: 275567	n:710000
MBD1   710000 perm   393 sec   (1805 perm/sec)   p_kst 3.881225e-01   p_cons 6.042254e-04   p_joint 2.380282e-03

Joint ci ratio: 8.230998e-02	ci left: 3.010990e-03	ci right 3.270811e-03	k: 2260	n:720000
Cons ci ratio: 1.878927e-01	ci left: 5.474092e-04	ci right 6.622262e-04	k: 434	n:720000
KS ci ratio: 5.800721e-03	ci left: 3.869797e-01	ci right 3.892323e-01	k: 279436	n:720000
MBD1   720000 perm   402 sec   (1792 perm/sec)   p_kst 3.881056e-01   p_cons 6.027778e-04   p_joint 3.138889e-03

Joint ci ratio: 9.364713e-02	ci left: 2.282358e-03	ci right 2.507921e-03	k: 1747	n:730000
Cons ci ratio: 1.670863e-01	ci left: 6.904741e-04	ci right 8.176512e-04	k: 549	n:730000
KS ci ratio: 5.760638e-03	ci left: 3.870051e-01	ci right 3.892423e-01	k: 283330	n:730000
MBD1   730000 perm   410 sec   (1779 perm/sec)   p_kst 3.881233e-01   p_cons 7.520548e-04   p_joint 2.393151e-03

Joint ci ratio: 9.311619e-02	ci left: 2.277911e-03	ci right 2.501688e-03	k: 1767	n:740000
Cons ci ratio: 1.658841e-01	ci left: 6.915038e-04	ci right 8.178626e-04	k: 557	n:740000
KS ci ratio: 5.721489e-03	ci left: 3.870205e-01	ci right 3.892425e-01	k: 287217	n:740000
MBD1   740000 perm   419 sec   (1766 perm/sec)   p_kst 3.881311e-01   p_cons 7.527027e-04   p_joint 2.387838e-03

Joint ci ratio: 9.285483e-02	ci left: 2.260562e-03	ci right 2.481977e-03	k: 1777	n:750000
Cons ci ratio: 1.651462e-01	ci left: 6.886742e-04	ci right 8.139005e-04	k: 562	n:750000
KS ci ratio: 5.683286e-03	ci left: 3.870222e-01	ci right 3.892293e-01	k: 291094	n:750000
MBD1   750000 perm   428 sec   (1752 perm/sec)   p_kst 3.881253e-01   p_cons 7.493333e-04   p_joint 2.369333e-03

Joint ci ratio: 9.233718e-02	ci left: 2.256523e-03	ci right 2.476244e-03	k: 1797	n:760000
Cons ci ratio: 1.641290e-01	ci left: 6.884437e-04	ci right 8.127810e-04	k: 569	n:760000
KS ci ratio: 5.645605e-03	ci left: 3.870436e-01	ci right 3.892362e-01	k: 294986	n:760000
MBD1   760000 perm   437 sec   (1740 perm/sec)   p_kst 3.881395e-01   p_cons 7.486842e-04   p_joint 2.364474e-03

Joint ci ratio: 9.192952e-02	ci left: 2.247518e-03	ci right 2.465344e-03	k: 1813	n:770000
Cons ci ratio: 1.636993e-01	ci left: 6.832390e-04	ci right 8.062813e-04	k: 572	n:770000
KS ci ratio: 5.609644e-03	ci left: 3.869815e-01	ci right 3.891596e-01	k: 298814	n:770000
MBD1   770000 perm   446 sec   (1728 perm/sec)   p_kst 3.880701e-01   p_cons 7.428571e-04   p_joint 2.354545e-03

Joint ci ratio: 9.140213e-02	ci left: 2.245009e-03	ci right 2.461277e-03	k: 1834	n:780000
Cons ci ratio: 1.625683e-01	ci left: 6.843173e-04	ci right 8.066191e-04	k: 580	n:780000
KS ci ratio: 5.573550e-03	ci left: 3.869901e-01	ci right 3.891543e-01	k: 302696	n:780000
MBD1   780000 perm   455 sec   (1714 perm/sec)   p_kst 3.880718e-01   p_cons 7.435897e-04   p_joint 2.351282e-03

Joint ci ratio: 9.093283e-02	ci left: 2.240094e-03	ci right 2.454721e-03	k: 1853	n:790000
Cons ci ratio: 1.620119e-01	ci left: 6.805126e-04	ci right 8.016777e-04	k: 584	n:790000
KS ci ratio: 5.539191e-03	ci left: 3.869088e-01	ci right 3.890591e-01	k: 306507	n:790000
MBD1   790000 perm   464 sec   (1702 perm/sec)   p_kst 3.879835e-01   p_cons 7.392405e-04   p_joint 2.345570e-03

Joint ci ratio: 9.049491e-02	ci left: 2.234082e-03	ci right 2.447047e-03	k: 1871	n:800000
Cons ci ratio: 1.613242e-01	ci left: 6.780032e-04	ci right 7.981594e-04	k: 589	n:800000
KS ci ratio: 5.503736e-03	ci left: 3.869782e-01	ci right 3.891151e-01	k: 310437	n:800000
MBD1   800000 perm   474 sec   (1687 perm/sec)   p_kst 3.880462e-01   p_cons 7.362500e-04   p_joint 2.338750e-03

Joint ci ratio: 8.996788e-02	ci left: 2.233048e-03	ci right 2.444610e-03	k: 1893	n:810000
Cons ci ratio: 1.603757e-01	ci left: 6.779269e-04	ci right 7.972952e-04	k: 596	n:810000
KS ci ratio: 5.470090e-03	ci left: 3.869472e-01	ci right 3.890709e-01	k: 314287	n:810000
MBD1   810000 perm   483 sec   (1675 perm/sec)   p_kst 3.880086e-01   p_cons 7.358025e-04   p_joint 2.337037e-03

Joint ci ratio: 9.020817e-02	ci left: 2.193893e-03	ci right 2.402330e-03	k: 1883	n:820000
Cons ci ratio: 1.593118e-01	ci left: 6.790254e-04	ci right 7.977180e-04	k: 604	n:820000
KS ci ratio: 5.436607e-03	ci left: 3.869560e-01	ci right 3.890667e-01	k: 318169	n:820000
MBD1   820000 perm   493 sec   (1663 perm/sec)   p_kst 3.880110e-01   p_cons 7.365854e-04   p_joint 2.296341e-03

Joint ci ratio: 9.143359e-02	ci left: 2.108584e-03	ci right 2.311783e-03	k: 1833	n:830000
Cons ci ratio: 1.578826e-01	ci left: 6.835716e-04	ci right 8.018854e-04	k: 615	n:830000
KS ci ratio: 5.456942e-03	ci left: 3.823237e-01	ci right 3.844169e-01	k: 318197	n:830000
MBD1   830000 perm   503 sec   (1652 perm/sec)   p_kst 3.833699e-01   p_cons 7.409639e-04   p_joint 2.208434e-03

Joint ci ratio: 9.079208e-02	ci left: 2.113729e-03	ci right 2.315919e-03	k: 1859	n:840000
Cons ci ratio: 1.567416e-01	ci left: 6.857264e-04	ci right 8.034748e-04	k: 624	n:840000
KS ci ratio: 5.424018e-03	ci left: 3.823600e-01	ci right 3.844408e-01	k: 322056	n:840000
MBD1   840000 perm   512 sec   (1639 perm/sec)   p_kst 3.834000e-01   p_cons 7.428571e-04   p_joint 2.213095e-03

Joint ci ratio: 9.033205e-02	ci left: 2.110708e-03	ci right 2.311532e-03	k: 1878	n:850000
Cons ci ratio: 1.559947e-01	ci left: 6.844416e-04	ci right 8.013570e-04	k: 630	n:850000
KS ci ratio: 5.391239e-03	ci left: 3.824344e-01	ci right 3.845029e-01	k: 325948	n:850000
MBD1   850000 perm   523 sec   (1626 perm/sec)   p_kst 3.834682e-01   p_cons 7.411765e-04   p_joint 2.209412e-03

Joint ci ratio: 8.487153e-02	ci left: 2.369376e-03	ci right 2.580509e-03	k: 2127	n:860000
Cons ci ratio: 1.556256e-01	ci left: 6.798352e-04	ci right 7.956633e-04	k: 633	n:860000
KS ci ratio: 5.360247e-03	ci left: 3.824013e-01	ci right 3.844577e-01	k: 329749	n:860000
MBD1   860000 perm   532 sec   (1615 perm/sec)   p_kst 3.834291e-01   p_cons 7.360465e-04   p_joint 2.473256e-03

Joint ci ratio: 8.431846e-02	ci left: 2.373645e-03	ci right 2.583712e-03	k: 2155	n:870000
Cons ci ratio: 1.547736e-01	ci left: 6.797545e-04	ci right 7.948760e-04	k: 640	n:870000
KS ci ratio: 5.327530e-03	ci left: 3.825688e-01	ci right 3.846135e-01	k: 333724	n:870000
MBD1   870000 perm   542 sec   (1604 perm/sec)   p_kst 3.835908e-01   p_cons 7.356322e-04   p_joint 2.477011e-03

Joint ci ratio: 8.443751e-02	ci left: 2.339996e-03	ci right 2.547392e-03	k: 2149	n:880000
Cons ci ratio: 1.541736e-01	ci left: 6.774922e-04	ci right 7.917446e-04	k: 645	n:880000
KS ci ratio: 5.296765e-03	ci left: 3.826111e-01	ci right 3.846442e-01	k: 337592	n:880000
MBD1   880000 perm   552 sec   (1594 perm/sec)   p_kst 3.836273e-01   p_cons 7.329545e-04   p_joint 2.442045e-03

Joint ci ratio: 8.397016e-02	ci left: 2.340102e-03	ci right 2.546304e-03	k: 2173	n:890000
Cons ci ratio: 1.533451e-01	ci left: 6.774425e-04	ci right 7.910162e-04	k: 652	n:890000
KS ci ratio: 5.265914e-03	ci left: 3.827075e-01	ci right 3.847292e-01	k: 341509	n:890000
MBD1   890000 perm   562 sec   (1583 perm/sec)   p_kst 3.837180e-01   p_cons 7.325843e-04   p_joint 2.441573e-03

Joint ci ratio: 8.347243e-02	ci left: 2.342385e-03	ci right 2.547505e-03	k: 2199	n:900000
Cons ci ratio: 1.527616e-01	ci left: 6.752580e-04	ci right 7.879953e-04	k: 657	n:900000
KS ci ratio: 5.236949e-03	ci left: 3.826796e-01	ci right 3.846900e-01	k: 345316	n:900000
MBD1   900000 perm   572 sec   (1573 perm/sec)   p_kst 3.836844e-01   p_cons 7.300000e-04   p_joint 2.443333e-03

Joint ci ratio: 8.377949e-02	ci left: 2.299428e-03	ci right 2.501563e-03	k: 2183	n:910000
Cons ci ratio: 1.518412e-01	ci left: 6.762938e-04	ci right 7.884620e-04	k: 665	n:910000
KS ci ratio: 5.207875e-03	ci left: 3.827051e-01	ci right 3.847044e-01	k: 349171	n:910000
MBD1   910000 perm   582 sec   (1563 perm/sec)   p_kst 3.837044e-01   p_cons 7.307692e-04   p_joint 2.398901e-03

Joint ci ratio: 8.149341e-02	ci left: 2.406437e-03	ci right 2.611932e-03	k: 2307	n:920000
Cons ci ratio: 1.606523e-01	ci left: 5.947818e-04	ci right 6.997079e-04	k: 594	n:920000
KS ci ratio: 5.179507e-03	ci left: 3.827094e-01	ci right 3.846978e-01	k: 353007	n:920000
MBD1   920000 perm   592 sec   (1553 perm/sec)   p_kst 3.837033e-01   p_cons 6.456522e-04   p_joint 2.507609e-03

Joint ci ratio: 8.176129e-02	ci left: 2.364760e-03	ci right 2.567391e-03	k: 2292	n:930000
Cons ci ratio: 1.594506e-01	ci left: 5.976762e-04	ci right 7.022487e-04	k: 603	n:930000
KS ci ratio: 5.151644e-03	ci left: 3.827094e-01	ci right 3.846871e-01	k: 356839	n:930000
MBD1   930000 perm   603 sec   (1543 perm/sec)   p_kst 3.836978e-01   p_cons 6.483871e-04   p_joint 2.464516e-03

Joint ci ratio: 8.133677e-02	ci left: 2.364614e-03	ci right 2.566131e-03	k: 2316	n:940000
Cons ci ratio: 1.589255e-01	ci left: 5.954037e-04	ci right 6.992028e-04	k: 607	n:940000
KS ci ratio: 5.122681e-03	ci left: 3.828518e-01	ci right 3.848191e-01	k: 360805	n:940000
MBD1   940000 perm   613 sec   (1533 perm/sec)   p_kst 3.838351e-01   p_cons 6.457447e-04   p_joint 2.463830e-03

Joint ci ratio: 8.246944e-02	ci left: 2.274761e-03	ci right 2.471450e-03	k: 2253	n:950000
Cons ci ratio: 1.573795e-01	ci left: 6.012681e-04	ci right 7.049736e-04	k: 619	n:950000
KS ci ratio: 5.095936e-03	ci left: 3.828303e-01	ci right 3.847872e-01	k: 364618	n:950000
MBD1   950000 perm   624 sec   (1524 perm/sec)   p_kst 3.838084e-01   p_cons 6.515789e-04   p_joint 2.371579e-03

Joint ci ratio: 8.612863e-02	ci left: 2.060369e-03	ci right 2.246822e-03	k: 2066	n:960000
Cons ci ratio: 1.568745e-01	ci left: 5.990077e-04	ci right 7.019606e-04	k: 623	n:960000
KS ci ratio: 5.130337e-03	ci left: 3.771954e-01	ci right 3.791366e-01	k: 363039	n:960000
MBD1   960000 perm   634 sec   (1514 perm/sec)   p_kst 3.781656e-01   p_cons 6.489583e-04   p_joint 2.152083e-03

Joint ci ratio: 8.627612e-02	ci left: 2.032066e-03	ci right 2.216289e-03	k: 2059	n:970000
Cons ci ratio: 1.556321e-01	ci left: 6.027386e-04	ci right 7.054358e-04	k: 633	n:970000
KS ci ratio: 5.103271e-03	ci left: 3.772513e-01	ci right 3.791824e-01	k: 366870	n:970000
MBD1   970000 perm   645 sec   (1504 perm/sec)   p_kst 3.782165e-01   p_cons 6.525773e-04   p_joint 2.122680e-03

Joint ci ratio: 8.573655e-02	ci left: 2.037290e-03	ci right 2.220774e-03	k: 2085	n:980000
Cons ci ratio: 1.545389e-01	ci left: 6.054156e-04	ci right 7.077772e-04	k: 642	n:980000
KS ci ratio: 5.076894e-03	ci left: 3.772816e-01	ci right 3.792028e-01	k: 370677	n:980000
MBD1   980000 perm   656 sec   (1495 perm/sec)   p_kst 3.782418e-01   p_cons 6.551020e-04   p_joint 2.127551e-03

Joint ci ratio: 7.441723e-02	ci left: 2.690916e-03	ci right 2.899889e-03	k: 2766	n:990000
Cons ci ratio: 1.445376e-01	ci left: 6.887584e-04	ci right 7.970254e-04	k: 734	n:990000
KS ci ratio: 5.050553e-03	ci left: 3.773456e-01	ci right 3.792572e-01	k: 374518	n:990000
MBD1   990000 perm   667 sec   (1485 perm/sec)   p_kst 3.783010e-01   p_cons 7.414141e-04   p_joint 2.793939e-03

Joint ci ratio: 7.388466e-02	ci left: 2.703266e-03	ci right 2.911631e-03	k: 2806	n:1000000
Cons ci ratio: 1.432757e-01	ci left: 6.944029e-04	ci right 8.025227e-04	k: 747	n:1000000
KS ci ratio: 5.025119e-03	ci left: 3.773613e-01	ci right 3.792634e-01	k: 378312	n:1000000
MBD1   1000000 perm   678 sec   (1476 perm/sec)   p_kst 3.783120e-01   p_cons 7.470000e-04   p_joint 2.806000e-03

Joint ci ratio: 7.351889e-02	ci left: 2.703712e-03	ci right 2.911036e-03	k: 2834	n:1010000
Cons ci ratio: 1.423273e-01	ci left: 6.970749e-04	ci right 8.048313e-04	k: 757	n:1010000
KS ci ratio: 4.999635e-03	ci left: 3.774174e-01	ci right 3.793100e-01	k: 382147	n:1010000
MBD1   1010000 perm   689 sec   (1466 perm/sec)   p_kst 3.783634e-01   p_cons 7.495050e-04   p_joint 2.805941e-03

Joint ci ratio: 7.314570e-02	ci left: 2.705116e-03	ci right 2.911449e-03	k: 2863	n:1020000
Cons ci ratio: 1.417674e-01	ci left: 6.959141e-04	ci right 8.030321e-04	k: 763	n:1020000
KS ci ratio: 4.974845e-03	ci left: 3.774430e-01	ci right 3.793263e-01	k: 385952	n:1020000
MBD1   1020000 perm   700 sec   (1457 perm/sec)   p_kst 3.783843e-01   p_cons 7.480392e-04   p_joint 2.806863e-03

Joint ci ratio: 7.284128e-02	ci left: 2.701728e-03	ci right 2.906909e-03	k: 2887	n:1030000
Cons ci ratio: 1.413980e-01	ci left: 6.929036e-04	ci right 7.992568e-04	k: 767	n:1030000
KS ci ratio: 4.951105e-03	ci left: 3.774031e-01	ci right 3.792772e-01	k: 389690	n:1030000
MBD1   1030000 perm   711 sec   (1448 perm/sec)   p_kst 3.783398e-01   p_cons 7.446602e-04   p_joint 2.802913e-03

Joint ci ratio: 7.257813e-02	ci left: 2.695574e-03	ci right 2.899518e-03	k: 2908	n:1040000
Cons ci ratio: 1.407580e-01	ci left: 6.927342e-04	ci right 7.985398e-04	k: 774	n:1040000
KS ci ratio: 4.927238e-03	ci left: 3.774082e-01	ci right 3.792733e-01	k: 393474	n:1040000
MBD1   1040000 perm   723 sec   (1439 perm/sec)   p_kst 3.783404e-01   p_cons 7.442308e-04   p_joint 2.796154e-03

Joint ci ratio: 7.233019e-02	ci left: 2.688605e-03	ci right 2.891297e-03	k: 2928	n:1050000
Cons ci ratio: 1.402164e-01	ci left: 6.916502e-04	ci right 7.968497e-04	k: 780	n:1050000
KS ci ratio: 4.903256e-03	ci left: 3.774570e-01	ci right 3.793132e-01	k: 397304	n:1050000
MBD1   1050000 perm   734 sec   (1430 perm/sec)   p_kst 3.783848e-01   p_cons 7.428571e-04   p_joint 2.788571e-03

Joint ci ratio: 7.223229e-02	ci left: 2.670650e-03	ci right 2.871705e-03	k: 2936	n:1060000
Cons ci ratio: 1.399482e-01	ci left: 6.878561e-04	ci right 7.922617e-04	k: 783	n:1060000
KS ci ratio: 4.879983e-03	ci left: 3.774700e-01	ci right 3.793175e-01	k: 401097	n:1060000
MBD1   1060000 perm   746 sec   (1422 perm/sec)   p_kst 3.783934e-01   p_cons 7.386792e-04   p_joint 2.769811e-03

Joint ci ratio: 7.193909e-02	ci left: 2.667716e-03	ci right 2.867701e-03	k: 2960	n:1070000
Cons ci ratio: 1.397703e-01	ci left: 6.832311e-04	ci right 7.867921e-04	k: 785	n:1070000
KS ci ratio: 4.856942e-03	ci left: 3.774921e-01	ci right 3.793310e-01	k: 404900	n:1070000
MBD1   1070000 perm   757 sec   (1413 perm/sec)   p_kst 3.784112e-01   p_cons 7.336449e-04   p_joint 2.766355e-03

Joint ci ratio: 7.192783e-02	ci left: 2.643923e-03	ci right 2.842092e-03	k: 2961	n:1080000
Cons ci ratio: 1.390644e-01	ci left: 6.840540e-04	ci right 7.871725e-04	k: 793	n:1080000
KS ci ratio: 4.835547e-03	ci left: 3.773852e-01	ci right 3.792154e-01	k: 408564	n:1080000
MBD1   1080000 perm   770 sec   (1403 perm/sec)   p_kst 3.783000e-01   p_cons 7.342593e-04   p_joint 2.741667e-03

Joint ci ratio: 7.259531e-02	ci left: 2.571018e-03	ci right 2.765585e-03	k: 2907	n:1090000
Cons ci ratio: 1.383690e-01	ci left: 6.848630e-04	ci right 7.875447e-04	k: 801	n:1090000
KS ci ratio: 4.812573e-03	ci left: 3.774619e-01	ci right 3.792837e-01	k: 412426	n:1090000
MBD1   1090000 perm   782 sec   (1394 perm/sec)   p_kst 3.783725e-01   p_cons 7.348624e-04   p_joint 2.666972e-03

Joint ci ratio: 7.222361e-02	ci left: 2.574424e-03	ci right 2.768210e-03	k: 2937	n:1100000
Cons ci ratio: 1.378544e-01	ci left: 6.839030e-04	ci right 7.860282e-04	k: 807	n:1100000
KS ci ratio: 4.790553e-03	ci left: 3.774754e-01	ci right 3.792889e-01	k: 416220	n:1100000
MBD1   1100000 perm   794 sec   (1386 perm/sec)   p_kst 3.783818e-01   p_cons 7.336364e-04   p_joint 2.670000e-03

Joint ci ratio: 7.197925e-02	ci left: 2.568924e-03	ci right 2.761614e-03	k: 2957	n:1110000
Cons ci ratio: 1.373455e-01	ci left: 6.829610e-04	ci right 7.845383e-04	k: 813	n:1110000
KS ci ratio: 4.768723e-03	ci left: 3.774994e-01	ci right 3.793048e-01	k: 420026	n:1110000
MBD1   1110000 perm   806 sec   (1378 perm/sec)   p_kst 3.784018e-01   p_cons 7.324324e-04   p_joint 2.663964e-03

Joint ci ratio: 7.204119e-02	ci left: 2.541602e-03	ci right 2.732413e-03	k: 2952	n:1120000
Cons ci ratio: 1.368422e-01	ci left: 6.820366e-04	ci right 7.830742e-04	k: 819	n:1120000
KS ci ratio: 4.746963e-03	ci left: 3.775454e-01	ci right 3.793427e-01	k: 423857	n:1120000
MBD1   1120000 perm   818 sec   (1370 perm/sec)   p_kst 3.784438e-01   p_cons 7.312500e-04   p_joint 2.635714e-03

Joint ci ratio: 7.179866e-02	ci left: 2.536490e-03	ci right 2.726250e-03	k: 2972	n:1130000
Cons ci ratio: 1.362618e-01	ci left: 6.819839e-04	ci right 7.825506e-04	k: 826	n:1130000
KS ci ratio: 4.725747e-03	ci left: 3.775658e-01	ci right 3.793552e-01	k: 427660	n:1130000
MBD1   1130000 perm   830 sec   (1361 perm/sec)   p_kst 3.784602e-01   p_cons 7.309735e-04   p_joint 2.630088e-03

Joint ci ratio: 7.157056e-02	ci left: 2.530608e-03	ci right 2.719302e-03	k: 2991	n:1140000
Cons ci ratio: 1.358519e-01	ci left: 6.802382e-04	ci right 7.802213e-04	k: 831	n:1140000
KS ci ratio: 4.705357e-03	ci left: 3.775315e-01	ci right 3.793130e-01	k: 431401	n:1140000
MBD1   1140000 perm   842 sec   (1354 perm/sec)   p_kst 3.784219e-01   p_cons 7.289474e-04   p_joint 2.623684e-03

Joint ci ratio: 7.135650e-02	ci left: 2.523975e-03	ci right 2.711588e-03	k: 3009	n:1150000
Cons ci ratio: 1.352840e-01	ci left: 6.802036e-04	ci right 7.797301e-04	k: 838	n:1150000
KS ci ratio: 4.684761e-03	ci left: 3.775448e-01	ci right 3.793185e-01	k: 435196	n:1150000
MBD1   1150000 perm   855 sec   (1346 perm/sec)   p_kst 3.784313e-01   p_cons 7.286957e-04   p_joint 2.616522e-03

Joint ci ratio: 7.257616e-02	ci left: 2.417556e-03	ci right 2.600459e-03	k: 2909	n:1160000
Cons ci ratio: 1.348828e-01	ci left: 6.785044e-04	ci right 7.774642e-04	k: 843	n:1160000
KS ci ratio: 4.664313e-03	ci left: 3.775699e-01	ci right 3.793359e-01	k: 439005	n:1160000
MBD1   1160000 perm   867 sec   (1338 perm/sec)   p_kst 3.784526e-01   p_cons 7.267241e-04   p_joint 2.507759e-03

Joint ci ratio: 7.214329e-02	ci left: 2.426267e-03	ci right 2.608689e-03	k: 2944	n:1170000
Cons ci ratio: 1.341693e-01	ci left: 6.801387e-04	ci right 7.787702e-04	k: 852	n:1170000
KS ci ratio: 4.644637e-03	ci left: 3.775433e-01	ci right 3.793018e-01	k: 442754	n:1170000
MBD1   1170000 perm   879 sec   (1330 perm/sec)   p_kst 3.784222e-01   p_cons 7.282051e-04   p_joint 2.516239e-03

Joint ci ratio: 7.303196e-02	ci left: 2.346624e-03	ci right 2.525324e-03	k: 2873	n:1180000
Cons ci ratio: 1.336999e-01	ci left: 6.792892e-04	ci right 7.774255e-04	k: 858	n:1180000
KS ci ratio: 4.625108e-03	ci left: 3.775274e-01	ci right 3.792783e-01	k: 446515	n:1180000
MBD1   1180000 perm   892 sec   (1323 perm/sec)   p_kst 3.784025e-01   p_cons 7.271186e-04   p_joint 2.434746e-03

Joint ci ratio: 6.912743e-02	ci left: 2.601778e-03	ci right 2.788891e-03	k: 3206	n:1190000
Cons ci ratio: 1.333126e-01	ci left: 6.776422e-04	ci right 7.752345e-04	k: 863	n:1190000
KS ci ratio: 4.605495e-03	ci left: 3.775453e-01	ci right 3.792889e-01	k: 450316	n:1190000
MBD1   1190000 perm   905 sec   (1315 perm/sec)   p_kst 3.784168e-01   p_cons 7.252101e-04   p_joint 2.694118e-03

Joint ci ratio: 6.897741e-02	ci left: 2.591561e-03	ci right 2.777519e-03	k: 3220	n:1200000
Cons ci ratio: 1.328522e-01	ci left: 6.768287e-04	ci right 7.739406e-04	k: 869	n:1200000
KS ci ratio: 4.586250e-03	ci left: 3.775505e-01	ci right 3.792868e-01	k: 454102	n:1200000
MBD1   1200000 perm   917 sec   (1308 perm/sec)   p_kst 3.784183e-01   p_cons 7.241667e-04   p_joint 2.683333e-03

Joint ci ratio: 6.863716e-02	ci left: 2.596135e-03	ci right 2.781465e-03	k: 3252	n:1210000
Cons ci ratio: 1.324722e-01	ci left: 6.752301e-04	ci right 7.718138e-04	k: 874	n:1210000
KS ci ratio: 4.567790e-03	ci left: 3.774994e-01	ci right 3.792285e-01	k: 457820	n:1210000
MBD1   1210000 perm   930 sec   (1301 perm/sec)   p_kst 3.783636e-01   p_cons 7.223140e-04   p_joint 2.687603e-03

Joint ci ratio: 6.845879e-02	ci left: 2.588550e-03	ci right 2.772840e-03	k: 3269	n:1220000
Cons ci ratio: 1.319455e-01	ci left: 6.752434e-04	ci right 7.714148e-04	k: 881	n:1220000
KS ci ratio: 4.549148e-03	ci left: 3.774909e-01	ci right 3.792129e-01	k: 461589	n:1220000
MBD1   1220000 perm   943 sec   (1294 perm/sec)   p_kst 3.783516e-01   p_cons 7.221311e-04   p_joint 2.679508e-03

Joint ci ratio: 6.812612e-02	ci left: 2.593077e-03	ci right 2.776756e-03	k: 3301	n:1230000
Cons ci ratio: 1.316475e-01	ci left: 6.728983e-04	ci right 7.685024e-04	k: 885	n:1230000
KS ci ratio: 4.530527e-03	ci left: 3.775038e-01	ci right 3.792187e-01	k: 465384	n:1230000
MBD1   1230000 perm   956 sec   (1287 perm/sec)   p_kst 3.783610e-01   p_cons 7.195122e-04   p_joint 2.683740e-03

Joint ci ratio: 6.801336e-02	ci left: 2.580885e-03	ci right 2.763386e-03	k: 3312	n:1240000
Cons ci ratio: 1.308376e-01	ci left: 6.760515e-04	ci right 7.714668e-04	k: 896	n:1240000
KS ci ratio: 4.512358e-03	ci left: 3.774931e-01	ci right 3.792011e-01	k: 469150	n:1240000
MBD1   1240000 perm   969 sec   (1280 perm/sec)   p_kst 3.783468e-01   p_cons 7.225806e-04   p_joint 2.670968e-03

Joint ci ratio: 6.789092e-02	ci left: 2.569674e-03	ci right 2.751042e-03	k: 3324	n:1250000
Cons ci ratio: 1.303301e-01	ci left: 6.760602e-04	ci right 7.710779e-04	k: 903	n:1250000
KS ci ratio: 4.494391e-03	ci left: 3.774841e-01	ci right 3.791853e-01	k: 472918	n:1250000
MBD1   1250000 perm   982 sec   (1273 perm/sec)   p_kst 3.783344e-01   p_cons 7.224000e-04   p_joint 2.659200e-03

Joint ci ratio: 6.761693e-02	ci left: 2.570346e-03	ci right 2.751000e-03	k: 3351	n:1260000
Cons ci ratio: 1.296150e-01	ci left: 6.783731e-04	ci right 7.731525e-04	k: 913	n:1260000
KS ci ratio: 4.476478e-03	ci left: 3.774920e-01	ci right 3.791864e-01	k: 476707	n:1260000
MBD1   1260000 perm   995 sec   (1266 perm/sec)   p_kst 3.783389e-01   p_cons 7.246032e-04   p_joint 2.659524e-03

Joint ci ratio: 6.738623e-02	ci left: 2.567911e-03	ci right 2.747755e-03	k: 3374	n:1270000
Cons ci ratio: 1.289814e-01	ci left: 6.798890e-04	ci right 7.743804e-04	k: 922	n:1270000
KS ci ratio: 4.458568e-03	ci left: 3.775218e-01	ci right 3.792095e-01	k: 480524	n:1270000
MBD1   1270000 perm   1008 sec   (1260 perm/sec)   p_kst 3.783654e-01   p_cons 7.259843e-04   p_joint 2.656693e-03

Joint ci ratio: 6.745711e-02	ci left: 2.542472e-03	ci right 2.720728e-03	k: 3367	n:1280000
Cons ci ratio: 1.284951e-01	ci left: 6.798700e-04	ci right 7.739753e-04	k: 929	n:1280000
KS ci ratio: 4.441433e-03	ci left: 3.774918e-01	ci right 3.791729e-01	k: 484265	n:1280000
MBD1   1280000 perm   1021 sec   (1253 perm/sec)   p_kst 3.783320e-01   p_cons 7.257812e-04   p_joint 2.630469e-03

Joint ci ratio: 6.733763e-02	ci left: 2.531908e-03	ci right 2.709097e-03	k: 3379	n:1290000
Cons ci ratio: 1.282198e-01	ci left: 6.776009e-04	ci right 7.711759e-04	k: 933	n:1290000
KS ci ratio: 4.424296e-03	ci left: 3.774832e-01	ci right 3.791577e-01	k: 488033	n:1290000
MBD1   1290000 perm   1035 sec   (1247 perm/sec)   p_kst 3.783202e-01   p_cons 7.232558e-04   p_joint 2.619380e-03

Joint ci ratio: 6.696197e-02	ci left: 2.541172e-03	ci right 2.717979e-03	k: 3417	n:1300000
Cons ci ratio: 1.276064e-01	ci left: 6.790902e-04	ci right 7.723882e-04	k: 942	n:1300000
KS ci ratio: 4.407227e-03	ci left: 3.774885e-01	ci right 3.791566e-01	k: 491819	n:1300000
MBD1   1300000 perm   1048 sec   (1240 perm/sec)   p_kst 3.783223e-01   p_cons 7.246154e-04   p_joint 2.628462e-03

Joint ci ratio: 6.669903e-02	ci left: 2.542040e-03	ci right 2.718186e-03	k: 3444	n:1310000
Cons ci ratio: 1.270685e-01	ci left: 6.798186e-04	ci right 7.727934e-04	k: 950	n:1310000
KS ci ratio: 4.390182e-03	ci left: 3.775122e-01	ci right 3.791739e-01	k: 495629	n:1310000
MBD1   1310000 perm   1062 sec   (1234 perm/sec)   p_kst 3.783427e-01   p_cons 7.251908e-04   p_joint 2.629008e-03

Joint ci ratio: 6.641998e-02	ci left: 2.544386e-03	ci right 2.719929e-03	k: 3473	n:1320000
Cons ci ratio: 1.261431e-01	ci left: 6.849387e-04	ci right 7.778805e-04	k: 964	n:1320000
KS ci ratio: 4.373975e-03	ci left: 3.774665e-01	ci right 3.791219e-01	k: 499348	n:1320000
MBD1   1320000 perm   1075 sec   (1227 perm/sec)   p_kst 3.782939e-01   p_cons 7.303030e-04   p_joint 2.631061e-03

Joint ci ratio: 6.661317e-02	ci left: 2.510466e-03	ci right 2.684192e-03	k: 3453	n:1330000
Cons ci ratio: 1.257528e-01	ci left: 6.841580e-04	ci right 7.766852e-04	k: 970	n:1330000
KS ci ratio: 4.357751e-03	ci left: 3.774426e-01	ci right 3.790917e-01	k: 503095	n:1330000
MBD1   1330000 perm   1089 sec   (1221 perm/sec)   p_kst 3.782669e-01   p_cons 7.293233e-04   p_joint 2.596241e-03

Joint ci ratio: 6.821654e-02	ci left: 2.374335e-03	ci right 2.542752e-03	k: 3293	n:1340000
Cons ci ratio: 1.252379e-01	ci left: 6.848350e-04	ci right 7.770465e-04	k: 978	n:1340000
KS ci ratio: 4.341058e-03	ci left: 3.774892e-01	ci right 3.791322e-01	k: 506936	n:1340000
MBD1   1340000 perm   1103 sec   (1215 perm/sec)   p_kst 3.783104e-01   p_cons 7.298507e-04   p_joint 2.457463e-03

Joint ci ratio: 6.795912e-02	ci left: 2.374951e-03	ci right 2.542750e-03	k: 3318	n:1350000
Cons ci ratio: 1.246661e-01	ci left: 6.862205e-04	ci right 7.781655e-04	k: 987	n:1350000
KS ci ratio: 4.324944e-03	ci left: 3.774929e-01	ci right 3.791298e-01	k: 510720	n:1350000
MBD1   1350000 perm   1117 sec   (1208 perm/sec)   p_kst 3.783111e-01   p_cons 7.311111e-04   p_joint 2.457778e-03

Joint ci ratio: 6.680928e-02	ci left: 2.440625e-03	ci right 2.610034e-03	k: 3433	n:1360000
Cons ci ratio: 1.240398e-01	ci left: 6.882990e-04	ci right 7.800252e-04	k: 997	n:1360000
KS ci ratio: 4.309218e-03	ci left: 3.774738e-01	ci right 3.791046e-01	k: 514473	n:1360000
MBD1   1360000 perm   1131 sec   (1202 perm/sec)   p_kst 3.782890e-01   p_cons 7.330882e-04   p_joint 2.524265e-03

Joint ci ratio: 6.647115e-02	ci left: 2.447932e-03	ci right 2.616955e-03	k: 3468	n:1370000
Cons ci ratio: 1.235456e-01	ci left: 6.889336e-04	ci right 7.803517e-04	k: 1005	n:1370000
KS ci ratio: 4.293428e-03	ci left: 3.774805e-01	ci right 3.791054e-01	k: 518261	n:1370000
MBD1   1370000 perm   1145 sec   (1196 perm/sec)   p_kst 3.782927e-01   p_cons 7.335766e-04   p_joint 2.531387e-03

Joint ci ratio: 6.642379e-02	ci left: 2.433756e-03	ci right 2.601676e-03	k: 3473	n:1380000
Cons ci ratio: 1.231181e-01	ci left: 6.888573e-04	ci right 7.799258e-04	k: 1012	n:1380000
KS ci ratio: 4.277797e-03	ci left: 3.774886e-01	ci right 3.791076e-01	k: 522051	n:1380000
MBD1   1380000 perm   1160 sec   (1190 perm/sec)   p_kst 3.782978e-01   p_cons 7.333333e-04   p_joint 2.516667e-03

Joint ci ratio: 6.654934e-02	ci left: 2.407049e-03	ci right 2.573452e-03	k: 3460	n:1390000
Cons ci ratio: 1.225147e-01	ci left: 6.908747e-04	ci right 7.817300e-04	k: 1022	n:1390000
KS ci ratio: 4.262394e-03	ci left: 3.774901e-01	ci right 3.791032e-01	k: 525832	n:1390000
MBD1   1390000 perm   1174 sec   (1184 perm/sec)   p_kst 3.782964e-01   p_cons 7.352518e-04   p_joint 2.489209e-03

Joint ci ratio: 6.633890e-02	ci left: 2.405309e-03	ci right 2.571046e-03	k: 3482	n:1400000
Cons ci ratio: 1.220384e-01	ci left: 6.914794e-04	ci right 7.820352e-04	k: 1030	n:1400000
KS ci ratio: 4.247376e-03	ci left: 3.774673e-01	ci right 3.790746e-01	k: 529579	n:1400000
MBD1   1400000 perm   1189 sec   (1178 perm/sec)   p_kst 3.782707e-01   p_cons 7.357143e-04   p_joint 2.487143e-03

Joint ci ratio: 6.625373e-02	ci left: 2.394527e-03	ci right 2.559301e-03	k: 3491	n:1410000
Cons ci ratio: 1.216263e-01	ci left: 6.913886e-04	ci right 7.816046e-04	k: 1037	n:1410000
KS ci ratio: 4.232158e-03	ci left: 3.774845e-01	ci right 3.790862e-01	k: 533382	n:1410000
MBD1   1410000 perm   1203 sec   (1172 perm/sec)   p_kst 3.782851e-01   p_cons 7.354610e-04   p_joint 2.475887e-03

Joint ci ratio: 6.595207e-02	ci left: 2.399827e-03	ci right 2.564185e-03	k: 3523	n:1420000
Cons ci ratio: 1.212182e-01	ci left: 6.912995e-04	ci right 7.811795e-04	k: 1044	n:1420000
KS ci ratio: 4.217513e-03	ci left: 3.774558e-01	ci right 3.790518e-01	k: 537120	n:1420000
MBD1   1420000 perm   1218 sec   (1166 perm/sec)   p_kst 3.782535e-01   p_cons 7.352113e-04   p_joint 2.480986e-03

Joint ci ratio: 6.573793e-02	ci left: 2.398864e-03	ci right 2.562602e-03	k: 3546	n:1430000
Cons ci ratio: 1.208718e-01	ci left: 6.905340e-04	ci right 7.800396e-04	k: 1050	n:1430000
KS ci ratio: 4.202869e-03	ci left: 3.774442e-01	ci right 3.790346e-01	k: 540882	n:1430000
MBD1   1430000 perm   1232 sec   (1160 perm/sec)   p_kst 3.782392e-01   p_cons 7.342657e-04   p_joint 2.479720e-03

Joint ci ratio: 6.547992e-02	ci left: 2.401331e-03	ci right 2.564570e-03	k: 3574	n:1440000
Cons ci ratio: 1.205854e-01	ci left: 6.891059e-04	ci right 7.781997e-04	k: 1055	n:1440000
KS ci ratio: 4.188315e-03	ci left: 3.774398e-01	ci right 3.790246e-01	k: 544654	n:1440000
MBD1   1440000 perm   1247 sec   (1154 perm/sec)   p_kst 3.782319e-01   p_cons 7.326389e-04   p_joint 2.481944e-03

Joint ci ratio: 6.522492e-02	ci left: 2.403765e-03	ci right 2.566509e-03	k: 3602	n:1450000
Cons ci ratio: 1.200183e-01	ci left: 6.910425e-04	ci right 7.799367e-04	k: 1065	n:1450000
KS ci ratio: 4.173941e-03	ci left: 3.774320e-01	ci right 3.790113e-01	k: 548421	n:1450000
MBD1   1450000 perm   1262 sec   (1149 perm/sec)   p_kst 3.782214e-01   p_cons 7.344828e-04   p_joint 2.484138e-03

Joint ci ratio: 6.503575e-02	ci left: 2.401450e-03	ci right 2.563548e-03	k: 3623	n:1460000
Cons ci ratio: 1.197939e-01	ci left: 6.889669e-04	ci right 7.774166e-04	k: 1069	n:1460000
KS ci ratio: 4.159842e-03	ci left: 3.774099e-01	ci right 3.789838e-01	k: 552167	n:1460000
MBD1   1460000 perm   1277 sec   (1143 perm/sec)   p_kst 3.781966e-01   p_cons 7.321918e-04   p_joint 2.481507e-03

Joint ci ratio: 6.482148e-02	ci left: 2.401175e-03	ci right 2.562700e-03	k: 3647	n:1470000
Cons ci ratio: 1.195151e-01	ci left: 6.875795e-04	ci right 7.756312e-04	k: 1074	n:1470000
KS ci ratio: 4.145914e-03	ci left: 3.773847e-01	ci right 3.789532e-01	k: 555908	n:1470000
MBD1   1470000 perm   1292 sec   (1138 perm/sec)   p_kst 3.781687e-01   p_cons 7.306122e-04   p_joint 2.480952e-03

Joint ci ratio: 6.463579e-02	ci left: 2.398910e-03	ci right 2.559804e-03	k: 3668	n:1480000
Cons ci ratio: 1.190179e-01	ci left: 6.888334e-04	ci right 7.766528e-04	k: 1083	n:1480000
KS ci ratio: 4.131989e-03	ci left: 3.773754e-01	ci right 3.789386e-01	k: 559672	n:1480000
MBD1   1480000 perm   1307 sec   (1132 perm/sec)   p_kst 3.781568e-01   p_cons 7.317568e-04   p_joint 2.478378e-03

Joint ci ratio: 6.425126e-02	ci left: 2.411865e-03	ci right 2.572629e-03	k: 3712	n:1490000
Cons ci ratio: 1.185811e-01	ci left: 6.894200e-04	ci right 7.769690e-04	k: 1091	n:1490000
KS ci ratio: 4.118086e-03	ci left: 3.773797e-01	ci right 3.789376e-01	k: 563456	n:1490000
MBD1   1490000 perm   1323 sec   (1126 perm/sec)   p_kst 3.781584e-01   p_cons 7.322148e-04   p_joint 2.491275e-03

Joint ci ratio: 6.401029e-02	ci left: 2.414153e-03	ci right 2.574444e-03	k: 3740	n:1500000
Cons ci ratio: 1.182567e-01	ci left: 6.887053e-04	ci right 7.759077e-04	k: 1097	n:1500000
KS ci ratio: 4.104194e-03	ci left: 3.773985e-01	ci right 3.789513e-01	k: 567262	n:1500000
MBD1   1500000 perm   1338 sec   (1121 perm/sec)   p_kst 3.781747e-01   p_cons 7.313333e-04   p_joint 2.493333e-03

Joint ci ratio: 6.375506e-02	ci left: 2.417716e-03	ci right 2.577579e-03	k: 3770	n:1510000
Cons ci ratio: 1.178282e-01	ci left: 6.892860e-04	ci right 7.762236e-04	k: 1105	n:1510000
KS ci ratio: 4.090119e-03	ci left: 3.774542e-01	ci right 3.790019e-01	k: 571124	n:1510000
MBD1   1510000 perm   1353 sec   (1116 perm/sec)   p_kst 3.782278e-01   p_cons 7.317881e-04   p_joint 2.496689e-03

Joint ci ratio: 6.354478e-02	ci left: 2.417995e-03	ci right 2.577331e-03	k: 3795	n:1520000
Cons ci ratio: 1.175099e-01	ci left: 6.885824e-04	ci right 7.751803e-04	k: 1111	n:1520000
KS ci ratio: 4.076678e-03	ci left: 3.774527e-01	ci right 3.789952e-01	k: 574900	n:1520000
MBD1   1520000 perm   1369 sec   (1111 perm/sec)   p_kst 3.782237e-01   p_cons 7.309211e-04   p_joint 2.496711e-03

Joint ci ratio: 6.341980e-02	ci left: 2.411839e-03	ci right 2.570445e-03	k: 3810	n:1530000
Cons ci ratio: 1.171942e-01	ci left: 6.878883e-04	ci right 7.741504e-04	k: 1117	n:1530000
KS ci ratio: 4.063301e-03	ci left: 3.774589e-01	ci right 3.789964e-01	k: 578688	n:1530000
MBD1   1530000 perm   1384 sec   (1105 perm/sec)   p_kst 3.782275e-01   p_cons 7.300654e-04   p_joint 2.490196e-03

Joint ci ratio: 6.348715e-02	ci left: 2.391065e-03	ci right 2.548478e-03	k: 3802	n:1540000
Cons ci ratio: 1.169331e-01	ci left: 6.865731e-04	ci right 7.724653e-04	k: 1122	n:1540000
KS ci ratio: 4.049837e-03	ci left: 3.774905e-01	ci right 3.790230e-01	k: 582515	n:1540000
MBD1   1540000 perm   1400 sec   (1100 perm/sec)   p_kst 3.782565e-01   p_cons 7.285714e-04   p_joint 2.468831e-03

Joint ci ratio: 6.328778e-02	ci left: 2.390877e-03	ci right 2.547765e-03	k: 3826	n:1550000
Cons ci ratio: 1.165188e-01	ci left: 6.871542e-04	ci right 7.727936e-04	k: 1130	n:1550000
KS ci ratio: 4.036656e-03	ci left: 3.775042e-01	ci right 3.790317e-01	k: 586315	n:1550000
MBD1   1550000 perm   1415 sec   (1095 perm/sec)   p_kst 3.782677e-01   p_cons 7.290323e-04   p_joint 2.468387e-03

Joint ci ratio: 6.309849e-02	ci left: 2.390062e-03	ci right 2.546410e-03	k: 3849	n:1560000
Cons ci ratio: 1.163648e-01	ci left: 6.846164e-04	ci right 7.698189e-04	k: 1133	n:1560000
KS ci ratio: 4.023476e-03	ci left: 3.775325e-01	ci right 3.790552e-01	k: 590138	n:1560000
MBD1   1560000 perm   1431 sec   (1090 perm/sec)   p_kst 3.782936e-01   p_cons 7.262821e-04   p_joint 2.467308e-03

Joint ci ratio: 6.286210e-02	ci left: 2.393019e-03	ci right 2.548953e-03	k: 3878	n:1570000
Cons ci ratio: 1.158550e-01	ci left: 6.864403e-04	ci right 7.714699e-04	k: 1143	n:1570000
KS ci ratio: 4.010956e-03	ci left: 3.774980e-01	ci right 3.790158e-01	k: 593863	n:1570000
MBD1   1570000 perm   1447 sec   (1085 perm/sec)   p_kst 3.782567e-01   p_cons 7.280255e-04   p_joint 2.470064e-03

Joint ci ratio: 6.267659e-02	ci left: 2.392202e-03	ci right 2.547606e-03	k: 3901	n:1580000
Cons ci ratio: 1.157540e-01	ci left: 6.833248e-04	ci right 7.678897e-04	k: 1145	n:1580000
KS ci ratio: 3.998171e-03	ci left: 3.775089e-01	ci right 3.790219e-01	k: 597659	n:1580000
MBD1   1580000 perm   1463 sec   (1080 perm/sec)   p_kst 3.782652e-01   p_cons 7.246835e-04   p_joint 2.468987e-03

Joint ci ratio: 6.294446e-02	ci left: 2.356726e-03	ci right 2.510504e-03	k: 3868	n:1590000
Cons ci ratio: 1.155526e-01	ci left: 6.814701e-04	ci right 7.656487e-04	k: 1149	n:1590000
KS ci ratio: 3.985816e-03	ci left: 3.774832e-01	ci right 3.789914e-01	k: 601397	n:1590000
MBD1   1590000 perm   1479 sec   (1075 perm/sec)   p_kst 3.782371e-01   p_cons 7.226415e-04   p_joint 2.432704e-03

Joint ci ratio: 6.275823e-02	ci left: 2.356146e-03	ci right 2.509414e-03	k: 3891	n:1600000
Cons ci ratio: 1.152026e-01	ci left: 6.814596e-04	ci right 7.653646e-04	k: 1156	n:1600000
KS ci ratio: 3.973618e-03	ci left: 3.774529e-01	ci right 3.789563e-01	k: 605127	n:1600000
MBD1   1600000 perm   1497 sec   (1069 perm/sec)   p_kst 3.782044e-01   p_cons 7.225000e-04   p_joint 2.431875e-03

Joint ci ratio: 6.245381e-02	ci left: 2.364745e-03	ci right 2.517799e-03	k: 3929	n:1610000
Cons ci ratio: 1.148063e-01	ci left: 6.820530e-04	ci right 7.657226e-04	k: 1164	n:1610000
KS ci ratio: 3.961530e-03	ci left: 3.774229e-01	ci right 3.789216e-01	k: 608857	n:1610000
MBD1   1610000 perm   1513 sec   (1064 perm/sec)   p_kst 3.781720e-01   p_cons 7.229814e-04   p_joint 2.440373e-03

Joint ci ratio: 6.221669e-02	ci left: 2.368378e-03	ci right 2.521064e-03	k: 3959	n:1620000
Cons ci ratio: 1.144630e-01	ci left: 6.820399e-04	ci right 7.654407e-04	k: 1171	n:1620000
KS ci ratio: 3.948977e-03	ci left: 3.774618e-01	ci right 3.789559e-01	k: 612698	n:1620000
MBD1   1620000 perm   1530 sec   (1059 perm/sec)   p_kst 3.782086e-01   p_cons 7.228395e-04   p_joint 2.443827e-03

Joint ci ratio: 6.243883e-02	ci left: 2.336936e-03	ci right 2.488153e-03	k: 3931	n:1630000
Cons ci ratio: 1.142682e-01	ci left: 6.802393e-04	ci right 7.632690e-04	k: 1175	n:1630000
KS ci ratio: 3.937257e-03	ci left: 3.774150e-01	ci right 3.789045e-01	k: 616400	n:1630000
MBD1   1630000 perm   1546 sec   (1054 perm/sec)   p_kst 3.781595e-01   p_cons 7.208589e-04   p_joint 2.411656e-03

Joint ci ratio: 6.301214e-02	ci left: 2.280071e-03	ci right 2.429012e-03	k: 3860	n:1640000
Cons ci ratio: 1.139779e-01	ci left: 6.796456e-04	ci right 7.623778e-04	k: 1181	n:1640000
KS ci ratio: 3.925110e-03	ci left: 3.774321e-01	ci right 3.789171e-01	k: 620206	n:1640000
MBD1   1640000 perm   1562 sec   (1050 perm/sec)   p_kst 3.781744e-01   p_cons 7.201220e-04   p_joint 2.353659e-03

Joint ci ratio: 6.283341e-02	ci left: 2.279376e-03	ci right 2.427834e-03	k: 3882	n:1650000
Cons ci ratio: 1.136898e-01	ci left: 6.790594e-04	ci right 7.614972e-04	k: 1187	n:1650000
KS ci ratio: 3.913232e-03	ci left: 3.774303e-01	ci right 3.789107e-01	k: 623981	n:1650000
MBD1   1650000 perm   1579 sec   (1045 perm/sec)   p_kst 3.781703e-01   p_cons 7.193939e-04   p_joint 2.352727e-03

Joint ci ratio: 6.289070e-02	ci left: 2.261493e-03	ci right 2.408926e-03	k: 3875	n:1660000
Cons ci ratio: 1.132142e-01	ci left: 6.808218e-04	ci right 7.631048e-04	k: 1197	n:1660000
KS ci ratio: 3.901281e-03	ci left: 3.774502e-01	ci right 3.789262e-01	k: 627792	n:1660000
MBD1   1660000 perm   1596 sec   (1040 perm/sec)   p_kst 3.781880e-01   p_cons 7.210843e-04   p_joint 2.334337e-03

Joint ci ratio: 6.272106e-02	ci left: 2.260329e-03	ci right 2.407274e-03	k: 3896	n:1670000
Cons ci ratio: 1.128380e-01	ci left: 6.814001e-04	ci right 7.634611e-04	k: 1205	n:1670000
KS ci ratio: 3.890182e-03	ci left: 3.773800e-01	ci right 3.788515e-01	k: 631453	n:1670000
MBD1   1670000 perm   1613 sec   (1035 perm/sec)   p_kst 3.781156e-01   p_cons 7.215569e-04   p_joint 2.332934e-03

Joint ci ratio: 6.320287e-02	ci left: 2.212307e-03	ci right 2.357275e-03	k: 3837	n:1680000
Cons ci ratio: 1.124656e-01	ci left: 6.819719e-04	ci right 7.638127e-04	k: 1213	n:1680000
KS ci ratio: 3.878592e-03	ci left: 3.773815e-01	ci right 3.788487e-01	k: 635233	n:1680000
MBD1   1680000 perm   1630 sec   (1031 perm/sec)   p_kst 3.781149e-01   p_cons 7.220238e-04   p_joint 2.283929e-03

Joint ci ratio: 6.307987e-02	ci left: 2.207951e-03	ci right 2.352343e-03	k: 3852	n:1690000
Cons ci ratio: 1.123732e-01	ci left: 6.790866e-04	ci right 7.605099e-04	k: 1215	n:1690000
KS ci ratio: 3.867407e-03	ci left: 3.773464e-01	ci right 3.788091e-01	k: 638951	n:1690000
MBD1   1690000 perm   1646 sec   (1026 perm/sec)   p_kst 3.780775e-01   p_cons 7.189349e-04   p_joint 2.279290e-03

Joint ci ratio: 6.256966e-02	ci left: 2.231441e-03	ci right 2.376145e-03	k: 3915	n:1700000
Cons ci ratio: 1.117771e-01	ci left: 6.825248e-04	ci right 7.638976e-04	k: 1228	n:1700000
KS ci ratio: 3.855720e-03	ci left: 3.773845e-01	ci right 3.788430e-01	k: 642793	n:1700000
MBD1   1700000 perm   1663 sec   (1022 perm/sec)   p_kst 3.781135e-01   p_cons 7.223529e-04   p_joint 2.302941e-03

Joint ci ratio: 6.236292e-02	ci left: 2.233359e-03	ci right 2.377692e-03	k: 3941	n:1710000
Cons ci ratio: 1.115958e-01	ci left: 6.808072e-04	ci right 7.618349e-04	k: 1232	n:1710000
KS ci ratio: 3.844674e-03	ci left: 3.773567e-01	ci right 3.788109e-01	k: 646523	n:1710000
MBD1   1710000 perm   1681 sec   (1017 perm/sec)   p_kst 3.780836e-01   p_cons 7.204678e-04   p_joint 2.304678e-03

Joint ci ratio: 6.211901e-02	ci left: 2.238117e-03	ci right 2.382171e-03	k: 3972	n:1720000
Cons ci ratio: 1.112804e-01	ci left: 6.808053e-04	ci right 7.615887e-04	k: 1239	n:1720000
KS ci ratio: 3.833173e-03	ci left: 3.773967e-01	ci right 3.788467e-01	k: 650369	n:1720000
MBD1   1720000 perm   1698 sec   (1013 perm/sec)   p_kst 3.781215e-01   p_cons 7.203488e-04   p_joint 2.309302e-03

Joint ci ratio: 6.193998e-02	ci left: 2.238269e-03	ci right 2.381903e-03	k: 3995	n:1730000
Cons ci ratio: 1.110121e-01	ci left: 6.802418e-04	ci right 7.607511e-04	k: 1245	n:1730000
KS ci ratio: 3.822140e-03	ci left: 3.773912e-01	ci right 3.788370e-01	k: 654137	n:1730000
MBD1   1730000 perm   1717 sec   (1008 perm/sec)   p_kst 3.781139e-01   p_cons 7.196532e-04   p_joint 2.309249e-03

Joint ci ratio: 6.171633e-02	ci left: 2.241814e-03	ci right 2.385138e-03	k: 4024	n:1740000
Cons ci ratio: 1.106133e-01	ci left: 6.813615e-04	ci right 7.616947e-04	k: 1254	n:1740000
KS ci ratio: 3.811300e-03	ci left: 3.773737e-01	ci right 3.788152e-01	k: 657884	n:1740000
MBD1   1740000 perm   1735 sec   (1003 perm/sec)   p_kst 3.780943e-01   p_cons 7.206897e-04   p_joint 2.312644e-03

Joint ci ratio: 6.156362e-02	ci left: 2.240256e-03	ci right 2.383113e-03	k: 4044	n:1750000
Cons ci ratio: 1.103499e-01	ci left: 6.808018e-04	ci right 7.608654e-04	k: 1260	n:1750000
KS ci ratio: 3.800335e-03	ci left: 3.773832e-01	ci right 3.788206e-01	k: 661678	n:1750000
MBD1   1750000 perm   1753 sec   (998 perm/sec)   p_kst 3.781017e-01   p_cons 7.200000e-04   p_joint 2.310857e-03

Joint ci ratio: 6.139691e-02	ci left: 2.239835e-03	ci right 2.382265e-03	k: 4066	n:1760000
Cons ci ratio: 1.099581e-01	ci left: 6.819064e-04	ci right 7.617967e-04	k: 1269	n:1760000
KS ci ratio: 3.789730e-03	ci left: 3.773597e-01	ci right 3.787930e-01	k: 665414	n:1760000
MBD1   1760000 perm   1770 sec   (994 perm/sec)   p_kst 3.780761e-01   p_cons 7.210227e-04   p_joint 2.310227e-03

Joint ci ratio: 6.143517e-02	ci left: 2.224399e-03	ci right 2.365938e-03	k: 4061	n:1770000
Cons ci ratio: 1.096134e-01	ci left: 6.824495e-04	ci right 7.621366e-04	k: 1277	n:1770000
KS ci ratio: 3.779130e-03	ci left: 3.773466e-01	ci right 3.787759e-01	k: 669168	n:1770000
MBD1   1770000 perm   1788 sec   (990 perm/sec)   p_kst 3.780610e-01   p_cons 7.214689e-04   p_joint 2.294350e-03

Joint ci ratio: 6.152673e-02	ci left: 2.205264e-03	ci right 2.345802e-03	k: 4049	n:1780000
Cons ci ratio: 1.093144e-01	ci left: 6.824404e-04	ci right 7.618952e-04	k: 1284	n:1780000
KS ci ratio: 3.768557e-03	ci left: 3.773415e-01	ci right 3.787668e-01	k: 672936	n:1780000
MBD1   1780000 perm   1806 sec   (986 perm/sec)   p_kst 3.780539e-01   p_cons 7.213483e-04   p_joint 2.274719e-03

Joint ci ratio: 6.133012e-02	ci left: 2.207246e-03	ci right 2.347445e-03	k: 4075	n:1790000
Cons ci ratio: 1.088915e-01	ci left: 6.840621e-04	ci right 7.633777e-04	k: 1294	n:1790000
KS ci ratio: 3.758366e-03	ci left: 3.772996e-01	ci right 3.787209e-01	k: 676638	n:1790000
MBD1   1790000 perm   1824 sec   (982 perm/sec)   p_kst 3.780101e-01   p_cons 7.229050e-04   p_joint 2.276536e-03

Joint ci ratio: 6.118774e-02	ci left: 2.205377e-03	ci right 2.345121e-03	k: 4094	n:1800000
Cons ci ratio: 1.087238e-01	ci left: 6.824234e-04	ci right 7.614195e-04	k: 1298	n:1800000
KS ci ratio: 3.747664e-03	ci left: 3.773327e-01	ci right 3.787500e-01	k: 680474	n:1800000
MBD1   1800000 perm   1841 sec   (978 perm/sec)   p_kst 3.780411e-01   p_cons 7.211111e-04   p_joint 2.274444e-03

Joint ci ratio: 6.106123e-02	ci left: 2.202441e-03	ci right 2.341700e-03	k: 4111	n:1810000
Cons ci ratio: 1.083905e-01	ci left: 6.829530e-04	ci right 7.617526e-04	k: 1306	n:1810000
KS ci ratio: 3.737330e-03	ci left: 3.773305e-01	ci right 3.787439e-01	k: 684247	n:1810000
MBD1   1810000 perm   1859 sec   (974 perm/sec)   p_kst 3.780370e-01   p_cons 7.215470e-04   p_joint 2.271271e-03

Joint ci ratio: 6.091332e-02	ci left: 2.201161e-03	ci right 2.339990e-03	k: 4131	n:1820000
Cons ci ratio: 1.081426e-01	ci left: 6.824080e-04	ci right 7.609531e-04	k: 1312	n:1820000
KS ci ratio: 3.727507e-03	ci left: 3.772746e-01	ci right 3.786840e-01	k: 687922	n:1820000
MBD1   1820000 perm   1877 sec   (970 perm/sec)   p_kst 3.779791e-01   p_cons 7.208791e-04   p_joint 2.269780e-03

Joint ci ratio: 6.072252e-02	ci left: 2.203125e-03	ci right 2.341627e-03	k: 4157	n:1830000
Cons ci ratio: 1.076110e-01	ci left: 6.855912e-04	ci right 7.640902e-04	k: 1325	n:1830000
KS ci ratio: 3.716815e-03	ci left: 3.773389e-01	ci right 3.787445e-01	k: 691816	n:1830000
MBD1   1830000 perm   1895 sec   (966 perm/sec)   p_kst 3.780415e-01   p_cons 7.240437e-04   p_joint 2.271585e-03

Joint ci ratio: 5.954321e-02	ci left: 2.280015e-03	ci right 2.420472e-03	k: 4323	n:1840000
Cons ci ratio: 1.072879e-01	ci left: 6.860961e-04	ci right 7.644021e-04	k: 1333	n:1840000
KS ci ratio: 3.706528e-03	ci left: 3.773629e-01	ci right 3.787647e-01	k: 695637	n:1840000
MBD1   1840000 perm   1913 sec   (962 perm/sec)   p_kst 3.780636e-01   p_cons 7.244565e-04   p_joint 2.349457e-03

Joint ci ratio: 5.962657e-02	ci left: 2.261300e-03	ci right 2.400806e-03	k: 4311	n:1850000
Cons ci ratio: 1.069277e-01	ci left: 6.871221e-04	ci right 7.652654e-04	k: 1342	n:1850000
KS ci ratio: 3.696826e-03	ci left: 3.773228e-01	ci right 3.787208e-01	k: 699340	n:1850000
MBD1   1850000 perm   1932 sec   (958 perm/sec)   p_kst 3.780216e-01   p_cons 7.254054e-04   p_joint 2.330270e-03

Joint ci ratio: 5.950948e-02	ci left: 2.258146e-03	ci right 2.397174e-03	k: 4328	n:1860000
Cons ci ratio: 1.066897e-01	ci left: 6.865675e-04	ci right 7.644630e-04	k: 1348	n:1860000
KS ci ratio: 3.686539e-03	ci left: 3.773676e-01	ci right 3.787618e-01	k: 703200	n:1860000
MBD1   1860000 perm   1950 sec   (954 perm/sec)   p_kst 3.780645e-01   p_cons 7.247312e-04   p_joint 2.326882e-03

Joint ci ratio: 5.937939e-02	ci left: 2.256080e-03	ci right 2.394666e-03	k: 4347	n:1870000
Cons ci ratio: 1.064926e-01	ci left: 6.854985e-04	ci right 7.631200e-04	k: 1353	n:1870000
KS ci ratio: 3.676525e-03	ci left: 3.773878e-01	ci right 3.787783e-01	k: 707015	n:1870000
MBD1   1870000 perm   1969 sec   (950 perm/sec)   p_kst 3.780829e-01   p_cons 7.235294e-04   p_joint 2.324599e-03

Joint ci ratio: 5.918226e-02	ci left: 2.259277e-03	ci right 2.397583e-03	k: 4376	n:1880000
Cons ci ratio: 1.062184e-01	ci left: 6.854766e-04	ci right 7.628833e-04	k: 1360	n:1880000
KS ci ratio: 3.666634e-03	ci left: 3.774025e-01	ci right 3.787894e-01	k: 710820	n:1880000
MBD1   1880000 perm   1987 sec   (946 perm/sec)   p_kst 3.780957e-01   p_cons 7.234043e-04   p_joint 2.327660e-03

Joint ci ratio: 5.900722e-02	ci left: 2.260876e-03	ci right 2.398857e-03	k: 4402	n:1890000
Cons ci ratio: 1.059075e-01	ci left: 6.859703e-04	ci right 7.631919e-04	k: 1368	n:1890000
KS ci ratio: 3.656826e-03	ci left: 3.774165e-01	ci right 3.787997e-01	k: 714624	n:1890000
MBD1   1890000 perm   2006 sec   (942 perm/sec)   p_kst 3.781079e-01   p_cons 7.238095e-04   p_joint 2.329101e-03

Joint ci ratio: 5.886704e-02	ci left: 2.259866e-03	ci right 2.397447e-03	k: 4423	n:1900000
Cons ci ratio: 1.057147e-01	ci left: 6.849218e-04	ci right 7.618763e-04	k: 1373	n:1900000
KS ci ratio: 3.647203e-03	ci left: 3.774167e-01	ci right 3.787963e-01	k: 718402	n:1900000
MBD1   1900000 perm   2025 sec   (938 perm/sec)   p_kst 3.781063e-01   p_cons 7.226316e-04   p_joint 2.327895e-03

Joint ci ratio: 5.872123e-02	ci left: 2.259384e-03	ci right 2.396583e-03	k: 4445	n:1910000
Cons ci ratio: 1.055230e-01	ci left: 6.838845e-04	ci right 7.605744e-04	k: 1378	n:1910000
KS ci ratio: 3.637841e-03	ci left: 3.773929e-01	ci right 3.787688e-01	k: 722134	n:1910000
MBD1   1910000 perm   2045 sec   (934 perm/sec)   p_kst 3.780806e-01   p_cons 7.214660e-04   p_joint 2.327225e-03

Joint ci ratio: 5.857651e-02	ci left: 2.258906e-03	ci right 2.395727e-03	k: 4467	n:1920000
Cons ci ratio: 1.052562e-01	ci left: 6.838723e-04	ci right 7.603550e-04	k: 1385	n:1920000
KS ci ratio: 3.628423e-03	ci left: 3.773859e-01	ci right 3.787582e-01	k: 725898	n:1920000
MBD1   1920000 perm   2064 sec   (930 perm/sec)   p_kst 3.780719e-01   p_cons 7.213542e-04   p_joint 2.326563e-03

Joint ci ratio: 5.847855e-02	ci left: 2.254860e-03	ci right 2.391200e-03	k: 4482	n:1930000
Cons ci ratio: 1.049537e-01	ci left: 6.843650e-04	ci right 7.606693e-04	k: 1393	n:1930000
KS ci ratio: 3.618958e-03	ci left: 3.773946e-01	ci right 3.787633e-01	k: 729692	n:1930000
MBD1   1930000 perm   2083 sec   (927 perm/sec)   p_kst 3.780788e-01   p_cons 7.217617e-04   p_joint 2.322280e-03

Joint ci ratio: 5.577537e-02	ci left: 2.468843e-03	ci right 2.610999e-03	k: 4926	n:1940000
Cons ci ratio: 1.045047e-01	ci left: 6.868610e-04	ci right 7.630958e-04	k: 1405	n:1940000
KS ci ratio: 3.609776e-03	ci left: 3.773758e-01	ci right 3.787410e-01	k: 733433	n:1940000
MBD1   1940000 perm   2103 sec   (923 perm/sec)   p_kst 3.780582e-01   p_cons 7.242268e-04   p_joint 2.539175e-03

Joint ci ratio: 5.563441e-02	ci left: 2.468825e-03	ci right 2.610608e-03	k: 4951	n:1950000
Cons ci ratio: 1.041718e-01	ci left: 6.878336e-04	ci right 7.639182e-04	k: 1414	n:1950000
KS ci ratio: 3.600522e-03	ci left: 3.773757e-01	ci right 3.787374e-01	k: 737210	n:1950000
MBD1   1950000 perm   2122 sec   (919 perm/sec)   p_kst 3.780564e-01   p_cons 7.251282e-04   p_joint 2.538974e-03

Joint ci ratio: 5.739268e-02	ci left: 2.306330e-03	ci right 2.443106e-03	k: 4653	n:1960000
Cons ci ratio: 1.039151e-01	ci left: 6.878027e-04	ci right 7.636850e-04	k: 1421	n:1960000
KS ci ratio: 3.591390e-03	ci left: 3.773690e-01	ci right 3.787272e-01	k: 740974	n:1960000
MBD1   1960000 perm   2141 sec   (915 perm/sec)   p_kst 3.780480e-01   p_cons 7.250000e-04   p_joint 2.373980e-03

Joint ci ratio: 5.725140e-02	ci left: 2.306131e-03	ci right 2.442547e-03	k: 4676	n:1970000
Cons ci ratio: 1.037329e-01	ci left: 6.867835e-04	ci right 7.624124e-04	k: 1426	n:1970000
KS ci ratio: 3.582435e-03	ci left: 3.773482e-01	ci right 3.787029e-01	k: 744710	n:1970000
MBD1   1970000 perm   2161 sec   (912 perm/sec)   p_kst 3.780254e-01   p_cons 7.238579e-04   p_joint 2.373604e-03

Joint ci ratio: 5.715994e-02	ci left: 2.301951e-03	ci right 2.437895e-03	k: 4691	n:1980000
Cons ci ratio: 1.034073e-01	ci left: 6.877426e-04	ci right 7.632250e-04	k: 1435	n:1980000
KS ci ratio: 3.573716e-03	ci left: 3.773053e-01	ci right 3.786566e-01	k: 748402	n:1980000
MBD1   1980000 perm   2181 sec   (908 perm/sec)   p_kst 3.779808e-01   p_cons 7.247475e-04   p_joint 2.369192e-03

Joint ci ratio: 5.703249e-02	ci left: 2.300785e-03	ci right 2.436348e-03	k: 4712	n:1990000
Cons ci ratio: 1.032278e-01	ci left: 6.867342e-04	ci right 7.619672e-04	k: 1440	n:1990000
KS ci ratio: 3.564767e-03	ci left: 3.773016e-01	ci right 3.786495e-01	k: 752171	n:1990000
MBD1   1990000 perm   2200 sec   (904 perm/sec)   p_kst 3.779754e-01   p_cons 7.236181e-04   p_joint 2.367839e-03

Joint ci ratio: 5.692397e-02	ci left: 2.298153e-03	ci right 2.433294e-03	k: 4730	n:2000000
Cons ci ratio: 1.030136e-01	ci left: 6.862232e-04	ci right 7.612347e-04	k: 1446	n:2000000
KS ci ratio: 3.556070e-03	ci left: 3.772734e-01	ci right 3.786179e-01	k: 755891	n:2000000
MBD1   2000000 perm   2220 sec   (901 perm/sec)   p_kst 3.779455e-01   p_cons 7.230000e-04   p_joint 2.365000e-03

Joint ci ratio: 5.682207e-02	ci left: 2.295057e-03	ci right 2.429767e-03	k: 4747	n:2010000
Cons ci ratio: 1.028007e-01	ci left: 6.857174e-04	ci right 7.605094e-04	k: 1452	n:2010000
KS ci ratio: 3.547143e-03	ci left: 3.772843e-01	ci right 3.786255e-01	k: 759689	n:2010000
MBD1   2010000 perm   2240 sec   (897 perm/sec)   p_kst 3.779547e-01   p_cons 7.223881e-04   p_joint 2.361692e-03

Joint ci ratio: 5.679843e-02	ci left: 2.285647e-03	ci right 2.419747e-03	k: 4751	n:2020000
Cons ci ratio: 1.026596e-01	ci left: 6.842520e-04	ci right 7.587756e-04	k: 1456	n:2020000
KS ci ratio: 3.538470e-03	ci left: 3.772704e-01	ci right 3.786082e-01	k: 763437	n:2020000
MBD1   2020000 perm   2260 sec   (894 perm/sec)   p_kst 3.779391e-01   p_cons 7.207921e-04   p_joint 2.351980e-03

Joint ci ratio: 5.665553e-02	ci left: 2.286042e-03	ci right 2.419817e-03	k: 4775	n:2030000
Cons ci ratio: 1.022393e-01	ci left: 6.866412e-04	ci right 7.611004e-04	k: 1468	n:2030000
KS ci ratio: 3.529900e-03	ci left: 3.772512e-01	ci right 3.785856e-01	k: 767174	n:2030000
MBD1   2030000 perm   2280 sec   (890 perm/sec)   p_kst 3.779182e-01   p_cons 7.231527e-04   p_joint 2.352217e-03

Joint ci ratio: 5.650781e-02	ci left: 2.286918e-03	ci right 2.420383e-03	k: 4800	n:2040000
Cons ci ratio: 1.020312e-01	ci left: 6.861414e-04	ci right 7.603858e-04	k: 1474	n:2040000
KS ci ratio: 3.521084e-03	ci left: 3.772733e-01	ci right 3.786045e-01	k: 770995	n:2040000
MBD1   2040000 perm   2301 sec   (887 perm/sec)   p_kst 3.779387e-01   p_cons 7.225490e-04   p_joint 2.352941e-03

Joint ci ratio: 5.639052e-02	ci left: 2.285381e-03	ci right 2.418471e-03	k: 4820	n:2050000
Cons ci ratio: 1.018587e-01	ci left: 6.851712e-04	ci right 7.591779e-04	k: 1479	n:2050000
KS ci ratio: 3.512848e-03	ci left: 3.772264e-01	ci right 3.785544e-01	k: 774675	n:2050000
MBD1   2050000 perm   2321 sec   (883 perm/sec)   p_kst 3.778902e-01   p_cons 7.214634e-04   p_joint 2.351220e-03

Joint ci ratio: 5.682370e-02	ci left: 2.239350e-03	ci right 2.370794e-03	k: 4747	n:2060000
Cons ci ratio: 1.015845e-01	ci left: 6.856298e-04	ci right 7.594748e-04	k: 1487	n:2060000
KS ci ratio: 3.504279e-03	ci left: 3.772325e-01	ci right 3.785572e-01	k: 778463	n:2060000
MBD1   2060000 perm   2341 sec   (880 perm/sec)   p_kst 3.778947e-01   p_cons 7.218447e-04   p_joint 2.304369e-03

Joint ci ratio: 5.705938e-02	ci left: 2.209958e-03	ci right 2.340233e-03	k: 4708	n:2070000
Cons ci ratio: 1.011435e-01	ci left: 6.884386e-04	ci right 7.622451e-04	k: 1500	n:2070000
KS ci ratio: 3.495840e-03	ci left: 3.772293e-01	ci right 3.785508e-01	k: 782232	n:2070000
MBD1   2070000 perm   2362 sec   (876 perm/sec)   p_kst 3.778899e-01   p_cons 7.246377e-04   p_joint 2.274396e-03

Joint ci ratio: 5.689644e-02	ci left: 2.212129e-03	ci right 2.342147e-03	k: 4735	n:2080000
Cons ci ratio: 1.009755e-01	ci left: 6.874719e-04	ci right 7.610451e-04	k: 1505	n:2080000
KS ci ratio: 3.487383e-03	ci left: 3.772367e-01	ci right 3.785550e-01	k: 786023	n:2080000
MBD1   2080000 perm   2382 sec   (873 perm/sec)   p_kst 3.778957e-01   p_cons 7.235577e-04   p_joint 2.276442e-03

Joint ci ratio: 5.673489e-02	ci left: 2.214280e-03	ci right 2.344043e-03	k: 4762	n:2090000
Cons ci ratio: 1.006419e-01	ci left: 6.888466e-04	ci right 7.623090e-04	k: 1515	n:2090000
KS ci ratio: 3.479026e-03	ci left: 3.772388e-01	ci right 3.785539e-01	k: 789803	n:2090000
MBD1   2090000 perm   2402 sec   (870 perm/sec)   p_kst 3.778962e-01   p_cons 7.248804e-04   p_joint 2.278469e-03

Joint ci ratio: 5.650971e-02	ci left: 2.221575e-03	ci right 2.351232e-03	k: 4800	n:2100000
Cons ci ratio: 1.002787e-01	ci left: 6.906729e-04	ci right 7.640485e-04	k: 1526	n:2100000
KS ci ratio: 3.470409e-03	ci left: 3.772841e-01	ci right 3.785962e-01	k: 793674	n:2100000
MBD1   2100000 perm   2422 sec   (867 perm/sec)   p_kst 3.779400e-01   p_cons 7.266667e-04   p_joint 2.285714e-03

Joint ci ratio: 5.642762e-02	ci left: 2.217588e-03	ci right 2.346818e-03	k: 4814	n:2110000
Cons ci ratio: 1.000496e-01	ci left: 6.906340e-04	ci right 7.638281e-04	k: 1533	n:2110000
KS ci ratio: 3.462006e-03	ci left: 3.773087e-01	ci right 3.786177e-01	k: 797502	n:2110000
MBD1   2110000 perm   2442 sec   (864 perm/sec)   p_kst 3.779630e-01   p_cons 7.265403e-04   p_joint 2.281517e-03

Joint ci ratio: 5.629333e-02	ci left: 2.217824e-03	ci right 2.346750e-03	k: 4837	n:2120000
Cons ci ratio: 9.995201e-02	ci left: 6.887560e-04	ci right 7.616756e-04	k: 1536	n:2120000
KS ci ratio: 3.454257e-03	ci left: 3.772524e-01	ci right 3.785583e-01	k: 801159	n:2120000
MBD1   2120000 perm   2463 sec   (861 perm/sec)   p_kst 3.779052e-01   p_cons 7.245283e-04   p_joint 2.281604e-03

Outputting figure to mutsig2_images.part000000000103/MBD1.7_2072_2120000_0.37791_0.00072453_0.0022816.png
                gene_name: MBD1
               theta_stop: 0.100 
                    nperm: 2120000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.00072 
      ci_cons_bounds_left: 0.00069 
     ci_cons_bounds_right: 0.00076 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0023 

Current progress: 19 percent done.
MCTP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
MCTP2   10000 perm   2 sec   (4660 perm/sec)   p_kst 5.088000e-01   p_cons 3.160000e-02   p_joint 1.086000e-01

Joint ci ratio: 8.585087e-02	ci left: 9.033297e-02	ci right 9.848539e-02	k: 1887	n:20000
Cons ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
KS ci ratio: 2.745996e-02	ci left: 4.976955e-01	ci right 5.116031e-01	k: 10093	n:20000
MCTP2   20000 perm   5 sec   (4220 perm/sec)   p_kst 5.046500e-01   p_cons 3.145000e-02   p_joint 9.435000e-02

Joint ci ratio: 7.606138e-02	ci left: 7.823141e-02	ci right 8.444995e-02	k: 2439	n:30000
Cons ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
KS ci ratio: 2.242824e-02	ci left: 4.988254e-01	ci right 5.101737e-01	k: 15135	n:30000
MCTP2   30000 perm   7 sec   (4039 perm/sec)   p_kst 5.045000e-01   p_cons 3.213333e-02   p_joint 8.130000e-02

Joint ci ratio: 5.584348e-02	ci left: 1.066039e-01	ci right 1.127529e-01	k: 4386	n:40000
Cons ci ratio: 1.066423e-01	ci left: 3.092988e-02	ci right 3.443839e-02	k: 1306	n:40000
KS ci ratio: 1.941784e-02	ci left: 4.997376e-01	ci right 5.095617e-01	k: 20186	n:40000
MCTP2   40000 perm   10 sec   (3925 perm/sec)   p_kst 5.046500e-01   p_cons 3.265000e-02   p_joint 1.096500e-01

Joint ci ratio: 5.172831e-02	ci left: 1.003488e-01	ci right 1.056974e-01	k: 5150	n:50000
Cons ci ratio: 9.592399e-02	ci left: 3.076755e-02	ci right 3.388706e-02	k: 1615	n:50000
KS ci ratio: 1.730106e-02	ci left: 5.021875e-01	ci right 5.109717e-01	k: 25329	n:50000
MCTP2   50000 perm   13 sec   (3841 perm/sec)   p_kst 5.065800e-01   p_cons 3.230000e-02   p_joint 1.030000e-01

Outputting figure to mutsig2_images.part000000000103/MCTP2.8_2801_50000_0.50658_0.0323_0.103.png
                gene_name: MCTP2
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 20 percent done.
MCHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
Cons ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
KS ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
MCHR2   10000 perm   2 sec   (5147 perm/sec)   p_kst 3.891000e-01   p_cons 3.090000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000103/MCHR2.7_1043_10000_0.3891_0.309_0.3834.png
                gene_name: MCHR2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 22 percent done.
MCM3AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
MCM3AP   10000 perm   3 sec   (3587 perm/sec)   p_kst 1.861000e-01   p_cons 5.252000e-01   p_joint 3.197000e-01

Outputting figure to mutsig2_images.part000000000103/MCM3AP.7_6055_10000_0.1861_0.5252_0.3197.png
                gene_name: MCM3AP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 24 percent done.
ME2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
Cons ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
ME2   10000 perm   2 sec   (4812 perm/sec)   p_kst 4.189000e-01   p_cons 5.678000e-01   p_joint 5.534000e-01

Outputting figure to mutsig2_images.part000000000103/ME2.7_1815_10000_0.4189_0.5678_0.5534.png
                gene_name: ME2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 25 percent done.
MBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
KS ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
MBD5   10000 perm   2 sec   (4123 perm/sec)   p_kst 1.888000e-01   p_cons 5.325000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000103/MBD5.6_4525_10000_0.1888_0.5325_0.37.png
                gene_name: MBD5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 27 percent done.
MBTPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
Cons ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
KS ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
MBTPS1   10000 perm   2 sec   (4885 perm/sec)   p_kst 2.553000e-01   p_cons 1.739000e-01   p_joint 2.365000e-01

Outputting figure to mutsig2_images.part000000000103/MBTPS1.6_3247_10000_0.2553_0.1739_0.2365.png
                gene_name: MBTPS1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 29 percent done.
MCF2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
Cons ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
MCF2L2   10000 perm   2 sec   (4366 perm/sec)   p_kst 5.378000e-01   p_cons 8.722000e-01   p_joint 7.219000e-01

Outputting figure to mutsig2_images.part000000000103/MCF2L2.6_3465_10000_0.5378_0.8722_0.7219.png
                gene_name: MCF2L2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 31 percent done.
MCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
Cons ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
KS ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
MCM2   10000 perm   2 sec   (4794 perm/sec)   p_kst 8.436000e-01   p_cons 1.480000e-01   p_joint 3.902000e-01

Outputting figure to mutsig2_images.part000000000103/MCM2.6_2779_10000_0.8436_0.148_0.3902.png
                gene_name: MCM2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 32 percent done.
MCM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
MCM4   10000 perm   2 sec   (5385 perm/sec)   p_kst 1.291000e-01   p_cons 8.200000e-02   p_joint 7.240000e-02

Joint ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
Cons ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
KS ci ratio: 7.103171e-02	ci left: 1.274361e-01	ci right 1.368712e-01	k: 2642	n:20000
MCM4   20000 perm   4 sec   (4775 perm/sec)   p_kst 1.321000e-01   p_cons 8.440000e-02   p_joint 1.146000e-01

Outputting figure to mutsig2_images.part000000000103/MCM4.6_2656_20000_0.1321_0.0844_0.1146.png
                gene_name: MCM4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 34 percent done.
MDH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
Cons ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
MDH1B   10000 perm   2 sec   (5651 perm/sec)   p_kst 6.487000e-01   p_cons 8.896000e-01   p_joint 8.217000e-01

Outputting figure to mutsig2_images.part000000000103/MDH1B.6_1605_10000_0.6487_0.8896_0.8217.png
                gene_name: MDH1B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 36 percent done.
MECP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
Cons ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
KS ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
MECP2   10000 perm   2 sec   (5667 perm/sec)   p_kst 4.991000e-01   p_cons 8.936000e-01   p_joint 7.253000e-01

Outputting figure to mutsig2_images.part000000000103/MECP2.6_1539_10000_0.4991_0.8936_0.7253.png
                gene_name: MECP2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 37 percent done.
MBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
MBD6   10000 perm   2 sec   (4959 perm/sec)   p_kst 1.201000e-01   p_cons 9.695000e-01   p_joint 2.054000e-01

Joint ci ratio: 5.030464e-02	ci left: 2.270067e-01	ci right 2.387711e-01	k: 4657	n:20000
Cons ci ratio: 4.546026e-03	ci left: 9.715433e-01	ci right 9.760175e-01	k: 19477	n:20000
KS ci ratio: 7.196004e-02	ci left: 1.245313e-01	ci right 1.338768e-01	k: 2583	n:20000
MBD6   20000 perm   5 sec   (4439 perm/sec)   p_kst 1.291500e-01   p_cons 9.738500e-01   p_joint 2.328500e-01

Outputting figure to mutsig2_images.part000000000103/MBD6.5_3056_20000_0.12915_0.97385_0.23285.png
                gene_name: MBD6
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 39 percent done.
MCM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
Cons ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KS ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
MCM3   10000 perm   2 sec   (5460 perm/sec)   p_kst 9.077000e-01   p_cons 4.754000e-01   p_joint 8.341000e-01

Outputting figure to mutsig2_images.part000000000103/MCM3.5_2495_10000_0.9077_0.4754_0.8341.png
                gene_name: MCM3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 41 percent done.
MCOLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
Cons ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
KS ci ratio: 3.336753e-02	ci left: 5.700537e-01	ci right 5.894998e-01	k: 5798	n:10000
MCOLN3   10000 perm   2 sec   (5984 perm/sec)   p_kst 5.798000e-01   p_cons 1.186000e-01   p_joint 2.803000e-01

Joint ci ratio: 3.956740e-02	ci left: 3.226378e-01	ci right 3.357119e-01	k: 6583	n:20000
Cons ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
KS ci ratio: 2.368791e-02	ci left: 5.710192e-01	ci right 5.847582e-01	k: 11558	n:20000
MCOLN3   20000 perm   4 sec   (5263 perm/sec)   p_kst 5.779000e-01   p_cons 1.168000e-01   p_joint 3.291500e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN3.5_1710_20000_0.5779_0.1168_0.32915.png
                gene_name: MCOLN3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 42 percent done.
MCRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
MCRS1   10000 perm   2 sec   (5986 perm/sec)   p_kst 8.352000e-01   p_cons 6.860000e-02   p_joint 2.274000e-01

Joint ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
Cons ci ratio: 1.022936e-01	ci left: 6.489067e-02	ci right 7.193544e-02	k: 1367	n:20000
KS ci ratio: 1.241156e-02	ci left: 8.277576e-01	ci right 8.381454e-01	k: 16660	n:20000
MCRS1   20000 perm   4 sec   (5227 perm/sec)   p_kst 8.330000e-01   p_cons 6.835000e-02   p_joint 2.302500e-01

Joint ci ratio: 4.080350e-02	ci left: 2.304429e-01	ci right 2.400751e-01	k: 7057	n:30000
Cons ci ratio: 8.372022e-02	ci left: 6.524191e-02	ci right 7.097540e-02	k: 2042	n:30000
KS ci ratio: 9.319395e-03	ci left: 8.509984e-01	ci right 8.589994e-01	k: 25651	n:30000
MCRS1   30000 perm   6 sec   (4968 perm/sec)   p_kst 8.550333e-01   p_cons 6.806667e-02   p_joint 2.352333e-01

Outputting figure to mutsig2_images.part000000000103/MCRS1.5_1498_30000_0.85503_0.068067_0.23523.png
                gene_name: MCRS1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 44 percent done.
MCART2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
MCART2   10000 perm   2 sec   (5880 perm/sec)   p_kst 5.874000e-01   p_cons 1.864000e-01   p_joint 4.713000e-01

Outputting figure to mutsig2_images.part000000000103/MCART2.4_898_10000_0.5874_0.1864_0.4713.png
                gene_name: MCART2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 46 percent done.
MCART6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
Cons ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
KS ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
MCART6   10000 perm   2 sec   (5802 perm/sec)   p_kst 6.381000e-01   p_cons 7.367000e-01   p_joint 8.553000e-01

Outputting figure to mutsig2_images.part000000000103/MCART6.4_928_10000_0.6381_0.7367_0.8553.png
                gene_name: MCART6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 47 percent done.
MCF2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
Cons ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
MCF2L   10000 perm   2 sec   (4873 perm/sec)   p_kst 8.350000e-02   p_cons 1.823000e-01   p_joint 1.200000e-01

Joint ci ratio: 7.497220e-02	ci left: 1.157235e-01	ci right 1.247872e-01	k: 2404	n:20000
Cons ci ratio: 5.804321e-02	ci left: 1.802823e-01	ci right 1.911093e-01	k: 3713	n:20000
KS ci ratio: 9.207096e-02	ci left: 7.926130e-02	ci right 8.696041e-02	k: 1661	n:20000
MCF2L   20000 perm   5 sec   (4392 perm/sec)   p_kst 8.305000e-02   p_cons 1.856500e-01   p_joint 1.202000e-01

Outputting figure to mutsig2_images.part000000000103/MCF2L.4_3764_20000_0.08305_0.18565_0.1202.png
                gene_name: MCF2L
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
MCM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
MCM7   10000 perm   2 sec   (5338 perm/sec)   p_kst 3.179000e-01   p_cons 1.398000e-01   p_joint 1.853000e-01

Outputting figure to mutsig2_images.part000000000103/MCM7.4_2220_10000_0.3179_0.1398_0.1853.png
                gene_name: MCM7
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 51 percent done.
MCM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.324121e-02	ci left: 7.311828e-01	ci right 7.484773e-01	k: 7399	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
MCM9   10000 perm   2 sec   (5555 perm/sec)   p_kst 3.377000e-01   p_cons 5.436000e-01   p_joint 7.399000e-01

Outputting figure to mutsig2_images.part000000000103/MCM9.4_1200_10000_0.3377_0.5436_0.7399.png
                gene_name: MCM9
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 53 percent done.
MDGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
KS ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
MDGA1   10000 perm   2 sec   (5014 perm/sec)   p_kst 1.140000e-01   p_cons 4.110000e-02   p_joint 4.590000e-02

Joint ci ratio: 1.330417e-01	ci left: 3.882614e-02	ci right 4.440812e-02	k: 831	n:20000
Cons ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
KS ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
MDGA1   20000 perm   4 sec   (4507 perm/sec)   p_kst 1.116000e-01   p_cons 4.220000e-02   p_joint 4.155000e-02

Joint ci ratio: 1.054090e-01	ci left: 4.173925e-02	ci right 4.641622e-02	k: 1321	n:30000
Cons ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
KS ci ratio: 6.399453e-02	ci left: 1.075979e-01	ci right 1.147443e-01	k: 3334	n:30000
MDGA1   30000 perm   7 sec   (4315 perm/sec)   p_kst 1.111333e-01   p_cons 4.213333e-02   p_joint 4.403333e-02

Joint ci ratio: 9.199002e-02	ci left: 4.142394e-02	ci right 4.544268e-02	k: 1736	n:40000
Cons ci ratio: 9.303065e-02	ci left: 4.051945e-02	ci right 4.449732e-02	k: 1699	n:40000
KS ci ratio: 5.559470e-02	ci left: 1.074682e-01	ci right 1.136385e-01	k: 4421	n:40000
MDGA1   40000 perm   10 sec   (4180 perm/sec)   p_kst 1.105250e-01   p_cons 4.247500e-02   p_joint 4.340000e-02

Outputting figure to mutsig2_images.part000000000103/MDGA1.4_2936_40000_0.11052_0.042475_0.0434.png
                gene_name: MDGA1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 54 percent done.
MAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
Cons ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
KS ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
MAX   10000 perm   2 sec   (6630 perm/sec)   p_kst 3.371000e-01   p_cons 8.930000e-02   p_joint 2.010000e-01

Joint ci ratio: 5.202509e-02	ci left: 2.153150e-01	ci right 2.268662e-01	k: 4421	n:20000
Cons ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
KS ci ratio: 3.917649e-02	ci left: 3.270153e-01	ci right 3.401331e-01	k: 6671	n:20000
MAX   20000 perm   3 sec   (5727 perm/sec)   p_kst 3.335500e-01   p_cons 8.990000e-02   p_joint 2.210500e-01

Outputting figure to mutsig2_images.part000000000103/MAX.3_843_20000_0.33355_0.0899_0.22105.png
                gene_name: MAX
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 56 percent done.
MBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
MBD4   10000 perm   2 sec   (5944 perm/sec)   p_kst 8.660000e-01   p_cons 2.608000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000103/MBD4.3_1775_10000_0.866_0.2608_0.6558.png
                gene_name: MBD4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 58 percent done.
MBIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
KS ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
MBIP   10000 perm   2 sec   (6022 perm/sec)   p_kst 8.839000e-01   p_cons 9.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBIP.3_1071_10000_0.8839_0.9498_1.png
                gene_name: MBIP
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
MBNL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
KS ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
MBNL1   10000 perm   2 sec   (6492 perm/sec)   p_kst 8.187000e-01   p_cons 7.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBNL1.2_1307_10000_0.8187_0.7966_1.png
                gene_name: MBNL1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
MBNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
MBNL2   10000 perm   2 sec   (6092 perm/sec)   p_kst 9.080000e-01   p_cons 2.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBNL2.3_1249_10000_0.908_0.2432_1.png
                gene_name: MBNL2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
MBNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
Cons ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
MBNL3   10000 perm   2 sec   (6329 perm/sec)   p_kst 3.981000e-01   p_cons 5.463000e-01   p_joint 4.186000e-01

Outputting figure to mutsig2_images.part000000000103/MBNL3.3_1189_10000_0.3981_0.5463_0.4186.png
                gene_name: MBNL3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 64 percent done.
MBOAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
Cons ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
KS ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
MBOAT1   10000 perm   2 sec   (5853 perm/sec)   p_kst 6.410000e-01   p_cons 1.327000e-01   p_joint 5.331000e-01

Joint ci ratio: 2.735854e-02	ci left: 4.995455e-01	ci right 5.134526e-01	k: 10130	n:20000
Cons ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
KS ci ratio: 2.059669e-02	ci left: 6.375695e-01	ci right 6.508885e-01	k: 12885	n:20000
MBOAT1   20000 perm   4 sec   (5160 perm/sec)   p_kst 6.442500e-01   p_cons 1.325500e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000103/MBOAT1.3_1540_20000_0.64425_0.13255_0.5065.png
                gene_name: MBOAT1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 66 percent done.
MCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 2.776432e-02	ci left: 6.565580e-01	ci right 6.751452e-01	k: 6659	n:10000
MCAM   10000 perm   2 sec   (5607 perm/sec)   p_kst 6.659000e-01   p_cons 2.380000e-02   p_joint 1.331000e-01

Joint ci ratio: 7.706328e-02	ci left: 1.101183e-01	ci right 1.189941e-01	k: 2290	n:20000
Cons ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
KS ci ratio: 1.956033e-02	ci left: 6.609721e-01	ci right 6.740791e-01	k: 13351	n:20000
MCAM   20000 perm   4 sec   (4958 perm/sec)   p_kst 6.675500e-01   p_cons 2.295000e-02   p_joint 1.145000e-01

Joint ci ratio: 6.613360e-02	ci left: 1.013557e-01	ci right 1.083210e-01	k: 3144	n:30000
Cons ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
KS ci ratio: 1.599573e-02	ci left: 6.615005e-01	ci right 6.722005e-01	k: 20006	n:30000
MCAM   30000 perm   6 sec   (4695 perm/sec)   p_kst 6.668667e-01   p_cons 2.306667e-02   p_joint 1.048000e-01

Joint ci ratio: 6.090244e-02	ci left: 9.098457e-02	ci right 9.672454e-02	k: 3753	n:40000
Cons ci ratio: 1.269674e-01	ci left: 2.179539e-02	ci right 2.477437e-02	k: 930	n:40000
KS ci ratio: 1.386579e-02	ci left: 6.618051e-01	ci right 6.710707e-01	k: 26658	n:40000
MCAM   40000 perm   9 sec   (4538 perm/sec)   p_kst 6.664500e-01   p_cons 2.325000e-02   p_joint 9.382500e-02

Joint ci ratio: 5.760624e-02	ci left: 8.231309e-02	ci right 8.721524e-02	k: 4237	n:50000
Cons ci ratio: 1.205190e-01	ci left: 1.946991e-02	ci right 2.198617e-02	k: 1035	n:50000
KS ci ratio: 1.239055e-02	ci left: 6.627090e-01	ci right 6.709916e-01	k: 33343	n:50000
MCAM   50000 perm   11 sec   (4423 perm/sec)   p_kst 6.668600e-01   p_cons 2.070000e-02   p_joint 8.474000e-02

Joint ci ratio: 6.082068e-02	ci left: 6.277728e-02	ci right 6.673162e-02	k: 3884	n:60000
Cons ci ratio: 1.108961e-01	ci left: 1.926757e-02	ci right 2.154582e-02	k: 1223	n:60000
KS ci ratio: 1.131168e-02	ci left: 6.630455e-01	ci right 6.706050e-01	k: 40010	n:60000
MCAM   60000 perm   14 sec   (4327 perm/sec)   p_kst 6.668333e-01   p_cons 2.038333e-02   p_joint 6.473333e-02

Joint ci ratio: 5.472816e-02	ci left: 6.641384e-02	ci right 7.016490e-02	k: 4779	n:70000
Cons ci ratio: 1.034117e-01	ci left: 1.907313e-02	ci right 2.116691e-02	k: 1407	n:70000
KS ci ratio: 1.047541e-02	ci left: 6.632083e-01	ci right 6.702065e-01	k: 46670	n:70000
MCAM   70000 perm   17 sec   (4235 perm/sec)   p_kst 6.667143e-01   p_cons 2.010000e-02   p_joint 6.827143e-02

Joint ci ratio: 4.543871e-02	ci left: 8.317527e-02	ci right 8.705488e-02	k: 6808	n:80000
Cons ci ratio: 9.600901e-02	ci left: 1.943159e-02	ci right 2.140341e-02	k: 1632	n:80000
KS ci ratio: 9.795039e-03	ci left: 6.636092e-01	ci right 6.701537e-01	k: 53351	n:80000
MCAM   80000 perm   19 sec   (4149 perm/sec)   p_kst 6.668875e-01   p_cons 2.040000e-02   p_joint 8.510000e-02

Outputting figure to mutsig2_images.part000000000103/MCAM.3_2005_80000_0.66689_0.0204_0.0851.png
                gene_name: MCAM
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 68 percent done.
MCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
Cons ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
KS ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
MCC   10000 perm   2 sec   (5224 perm/sec)   p_kst 2.920000e-02   p_cons 1.275000e-01   p_joint 5.180000e-02

Joint ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
Cons ci ratio: 7.267225e-02	ci left: 1.223656e-01	ci right 1.316432e-01	k: 2539	n:20000
KS ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
MCC   20000 perm   4 sec   (4616 perm/sec)   p_kst 2.945000e-02   p_cons 1.269500e-01   p_joint 3.425000e-02

Joint ci ratio: 9.251276e-02	ci left: 5.384851e-02	ci right 5.910446e-02	k: 1693	n:30000
Cons ci ratio: 5.885141e-02	ci left: 1.250288e-01	ci right 1.326432e-01	k: 3864	n:30000
KS ci ratio: 1.320554e-01	ci left: 2.664618e-02	ci right 3.044585e-02	k: 855	n:30000
MCC   30000 perm   7 sec   (4413 perm/sec)   p_kst 2.850000e-02   p_cons 1.288000e-01   p_joint 5.643333e-02

Joint ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
Cons ci ratio: 5.469489e-02	ci left: 1.106788e-01	ci right 1.169274e-01	k: 4551	n:40000
KS ci ratio: 1.137159e-01	ci left: 2.720712e-02	ci right 3.051175e-02	k: 1153	n:40000
MCC   40000 perm   9 sec   (4262 perm/sec)   p_kst 2.882500e-02   p_cons 1.137750e-01   p_joint 2.075000e-02

Joint ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
Cons ci ratio: 4.937222e-02	ci left: 1.091890e-01	ci right 1.147362e-01	k: 5597	n:50000
KS ci ratio: 1.013676e-01	ci left: 2.756604e-02	ci right 3.052897e-02	k: 1451	n:50000
MCC   50000 perm   12 sec   (4152 perm/sec)   p_kst 2.902000e-02   p_cons 1.119400e-01   p_joint 1.296000e-02

Joint ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
Cons ci ratio: 4.494855e-02	ci left: 1.099656e-01	ci right 1.150386e-01	k: 6749	n:60000
KS ci ratio: 9.246469e-02	ci left: 2.773695e-02	ci right 3.044219e-02	k: 1744	n:60000
MCC   60000 perm   15 sec   (4058 perm/sec)   p_kst 2.906667e-02   p_cons 1.124833e-01   p_joint 1.306667e-02

Joint ci ratio: 1.291703e-01	ci left: 1.214630e-02	ci right 1.383728e-02	k: 908	n:70000
Cons ci ratio: 4.163814e-02	ci left: 1.100408e-01	ci right 1.147343e-01	k: 7866	n:70000
KS ci ratio: 8.597254e-02	ci left: 2.760145e-02	ci right 3.009495e-02	k: 2018	n:70000
MCC   70000 perm   18 sec   (3976 perm/sec)   p_kst 2.882857e-02   p_cons 1.123714e-01   p_joint 1.297143e-02

Joint ci ratio: 1.348650e-01	ci left: 9.744804e-03	ci right 1.116603e-02	k: 835	n:80000
Cons ci ratio: 3.908586e-02	ci left: 1.095003e-01	ci right 1.138779e-01	k: 8934	n:80000
KS ci ratio: 8.069824e-02	ci left: 2.749262e-02	ci right 2.981673e-02	k: 2291	n:80000
MCC   80000 perm   21 sec   (3894 perm/sec)   p_kst 2.863750e-02   p_cons 1.116750e-01   p_joint 1.043750e-02

Joint ci ratio: 7.730304e-02	ci left: 2.670292e-02	ci right 2.886099e-02	k: 2499	n:90000
Cons ci ratio: 3.694757e-02	ci left: 1.091090e-01	ci right 1.132272e-01	k: 10004	n:90000
KS ci ratio: 7.642705e-02	ci left: 2.731351e-02	ci right 2.949481e-02	k: 2555	n:90000
MCC   90000 perm   24 sec   (3818 perm/sec)   p_kst 2.838889e-02   p_cons 1.111556e-01   p_joint 2.776667e-02

Outputting figure to mutsig2_images.part000000000103/MCC.3_3197_90000_0.028389_0.11116_0.027767.png
                gene_name: MCC
               theta_stop: 0.077 
                    nperm: 90000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 69 percent done.
MCCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
Cons ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
KS ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
MCCC2   10000 perm   2 sec   (6016 perm/sec)   p_kst 2.140000e-01   p_cons 7.368000e-01   p_joint 2.715000e-01

Outputting figure to mutsig2_images.part000000000103/MCCC2.3_1760_10000_0.214_0.7368_0.2715.png
                gene_name: MCCC2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 71 percent done.
MCM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.675337e-02	ci left: 6.729719e-01	ci right 6.913219e-01	k: 6822	n:10000
Cons ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
KS ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
MCM5   10000 perm   2 sec   (5731 perm/sec)   p_kst 3.603000e-01   p_cons 3.280000e-01   p_joint 6.822000e-01

Outputting figure to mutsig2_images.part000000000103/MCM5.3_2269_10000_0.3603_0.328_0.6822.png
                gene_name: MCM5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 73 percent done.
MCTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
Cons ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
KS ci ratio: 5.416871e-02	ci left: 3.342886e-01	ci right 3.530026e-01	k: 3436	n:10000
MCTP1   10000 perm   2 sec   (5293 perm/sec)   p_kst 3.436000e-01   p_cons 5.988000e-01   p_joint 4.704000e-01

Outputting figure to mutsig2_images.part000000000103/MCTP1.3_3153_10000_0.3436_0.5988_0.4704.png
                gene_name: MCTP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 75 percent done.
MBLAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
Cons ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
KS ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
MBLAC2   10000 perm   1 sec   (6841 perm/sec)   p_kst 9.875000e-01   p_cons 9.980000e-02   p_joint 9.875000e-01

Joint ci ratio: 3.205449e-03	ci left: 9.851735e-01	ci right 9.883827e-01	k: 19737	n:20000
Cons ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
KS ci ratio: 3.205449e-03	ci left: 9.851735e-01	ci right 9.883827e-01	k: 19737	n:20000
MBLAC2   20000 perm   3 sec   (5826 perm/sec)   p_kst 9.868500e-01   p_cons 9.955000e-02   p_joint 9.868500e-01

Outputting figure to mutsig2_images.part000000000103/MBLAC2.2_848_20000_0.98685_0.09955_0.98685.png
                gene_name: MBLAC2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
MBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
KS ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
MBP   10000 perm   2 sec   (6602 perm/sec)   p_kst 9.579000e-01   p_cons 4.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBP.2_1047_10000_0.9579_0.469_1.png
                gene_name: MBP
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MBTPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
MBTPS2   10000 perm   2 sec   (6538 perm/sec)   p_kst 5.908000e-01   p_cons 1.426000e-01   p_joint 3.571000e-01

Outputting figure to mutsig2_images.part000000000103/MBTPS2.2_1604_10000_0.5908_0.1426_0.3571.png
                gene_name: MBTPS2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 80 percent done.
MC2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
Cons ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
KS ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
MC2R   10000 perm   1 sec   (6733 perm/sec)   p_kst 6.844000e-01   p_cons 7.560000e-02   p_joint 1.546000e-01

Joint ci ratio: 4.589145e-02	ci left: 2.611262e-01	ci right 2.734415e-01	k: 5345	n:20000
Cons ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
KS ci ratio: 1.890721e-02	ci left: 6.759471e-01	ci right 6.888998e-01	k: 13649	n:20000
MC2R   20000 perm   3 sec   (5791 perm/sec)   p_kst 6.824500e-01   p_cons 7.520000e-02   p_joint 2.672500e-01

Outputting figure to mutsig2_images.part000000000103/MC2R.2_898_20000_0.68245_0.0752_0.26725.png
                gene_name: MC2R
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 81 percent done.
MCCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
Cons ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
KS ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
MCCC1   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.724000e-01   p_cons 6.602000e-01   p_joint 7.903000e-01

Outputting figure to mutsig2_images.part000000000103/MCCC1.2_2254_10000_0.5724_0.6602_0.7903.png
                gene_name: MCCC1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 83 percent done.
MCM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
MCM10   10000 perm   2 sec   (5890 perm/sec)   p_kst 6.610000e-02   p_cons 2.574000e-01   p_joint 6.680000e-02

Joint ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
Cons ci ratio: 4.693928e-02	ci left: 2.524428e-01	ci right 2.646275e-01	k: 5170	n:20000
KS ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
MCM10   20000 perm   4 sec   (5165 perm/sec)   p_kst 6.170000e-02   p_cons 2.585000e-01   p_joint 2.810000e-02

Joint ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
Cons ci ratio: 3.837423e-02	ci left: 2.530890e-01	ci right 2.630246e-01	k: 7741	n:30000
KS ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
MCM10   30000 perm   6 sec   (4889 perm/sec)   p_kst 6.010000e-02   p_cons 2.580333e-01   p_joint 7.010000e-02

Outputting figure to mutsig2_images.part000000000103/MCM10.2_2704_30000_0.0601_0.25803_0.0701.png
                gene_name: MCM10
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.073 

Current progress: 85 percent done.
MCOLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355848e-02	ci left: 8.869816e-01	ci right 8.991884e-01	k: 8932	n:10000
Cons ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
KS ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
MCOLN2   10000 perm   2 sec   (6119 perm/sec)   p_kst 6.809000e-01   p_cons 7.079000e-01   p_joint 8.932000e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN2.2_1757_10000_0.6809_0.7079_0.8932.png
                gene_name: MCOLN2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 86 percent done.
MCPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
Cons ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
KS ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
MCPH1   10000 perm   2 sec   (5637 perm/sec)   p_kst 9.363000e-01   p_cons 9.650000e-02   p_joint 2.940000e-01

Joint ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
Cons ci ratio: 8.481310e-02	ci left: 9.239258e-02	ci right 1.006252e-01	k: 1929	n:20000
KS ci ratio: 7.379336e-03	ci left: 9.303169e-01	ci right 9.372563e-01	k: 18677	n:20000
MCPH1   20000 perm   4 sec   (4990 perm/sec)   p_kst 9.338500e-01   p_cons 9.645000e-02   p_joint 1.628500e-01

Outputting figure to mutsig2_images.part000000000103/MCPH1.2_2572_20000_0.93385_0.09645_0.16285.png
                gene_name: MCPH1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 88 percent done.
MDFIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
KS ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
MDFIC   10000 perm   2 sec   (6566 perm/sec)   p_kst 5.670000e-01   p_cons 6.700000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
KS ci ratio: 2.433985e-02	ci left: 5.576946e-01	ci right 5.714866e-01	k: 11292	n:20000
MDFIC   20000 perm   3 sec   (5754 perm/sec)   p_kst 5.646000e-01   p_cons 6.910000e-02   p_joint 1

Joint ci ratio: 4.328924e-03	ci left: 9.625839e-01	ci right 9.667921e-01	k: 28942	n:30000
Cons ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
KS ci ratio: 1.999265e-02	ci left: 5.560295e-01	ci right 5.672919e-01	k: 16850	n:30000
MDFIC   30000 perm   6 sec   (5416 perm/sec)   p_kst 5.616667e-01   p_cons 6.926667e-02   p_joint 9.647333e-01

Outputting figure to mutsig2_images.part000000000103/MDFIC.2_1130_30000_0.56167_0.069267_0.96473.png
                gene_name: MDFIC
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
MDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
Cons ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
KS ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
MDH1   10000 perm   2 sec   (6622 perm/sec)   p_kst 5.904000e-01   p_cons 5.200000e-02   p_joint 8.840000e-02

Joint ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
Cons ci ratio: 1.205662e-01	ci left: 4.716578e-02	ci right 5.326583e-02	k: 1003	n:20000
KS ci ratio: 2.302902e-02	ci left: 5.847498e-01	ci right 5.984235e-01	k: 11832	n:20000
MDH1   20000 perm   3 sec   (5737 perm/sec)   p_kst 5.916000e-01   p_cons 5.015000e-02   p_joint 8.510000e-02

Joint ci ratio: 7.422233e-02	ci left: 8.190061e-02	ci right 8.824668e-02	k: 2551	n:30000
Cons ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
KS ci ratio: 1.873869e-02	ci left: 5.876826e-01	ci right 5.988327e-01	k: 17798	n:30000
MDH1   30000 perm   6 sec   (5426 perm/sec)   p_kst 5.932667e-01   p_cons 5.143333e-02   p_joint 8.503333e-02

Outputting figure to mutsig2_images.part000000000103/MDH1.2_1041_30000_0.59327_0.051433_0.085033.png
                gene_name: MDH1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 92 percent done.
MDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
MDH2   10000 perm   1 sec   (6944 perm/sec)   p_kst 3.202000e-01   p_cons 1.169000e-01   p_joint 2.024000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
KS ci ratio: 4.024446e-02	ci left: 3.152273e-01	ci right 3.282245e-01	k: 6434	n:20000
MDH2   20000 perm   3 sec   (6030 perm/sec)   p_kst 3.217000e-01   p_cons 1.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MDH2.2_1053_20000_0.3217_0.1115_1.png
                gene_name: MDH2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
MDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
Cons ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
KS ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
MDM1   10000 perm   2 sec   (6031 perm/sec)   p_kst 5.708000e-01   p_cons 5.929000e-01   p_joint 8.007000e-01

Outputting figure to mutsig2_images.part000000000103/MDM1.2_2372_10000_0.5708_0.5929_0.8007.png
                gene_name: MDM1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 95 percent done.
MDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
MDM2   10000 perm   2 sec   (6314 perm/sec)   p_kst 3.911000e-01   p_cons 8.864000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MDM2.2_1538_10000_0.3911_0.8864_1.png
                gene_name: MDM2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
MDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
MDP1   10000 perm   1 sec   (6940 perm/sec)   p_kst 4.428000e-01   p_cons 8.241000e-01   p_joint 9.395000e-01

Outputting figure to mutsig2_images.part000000000103/MDP1.2_555_10000_0.4428_0.8241_0.9395.png
                gene_name: MDP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 98 percent done.
ME3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 5.298924e-02	ci left: 3.442234e-01	ci right 3.630619e-01	k: 3536	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
ME3   10000 perm   2 sec   (6136 perm/sec)   p_kst 4.390000e-02   p_cons 3.536000e-01   p_joint 7.810000e-02

Joint ci ratio: 5.228321e-02	ci left: 2.136312e-01	ci right 2.251505e-01	k: 4387	n:20000
Cons ci ratio: 3.751408e-02	ci left: 3.464730e-01	ci right 3.597697e-01	k: 7062	n:20000
KS ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
ME3   20000 perm   4 sec   (5383 perm/sec)   p_kst 4.410000e-02   p_cons 3.531000e-01   p_joint 2.193500e-01

Joint ci ratio: 4.287284e-02	ci left: 2.132394e-01	ci right 2.226153e-01	k: 6537	n:30000
Cons ci ratio: 2.933266e-02	ci left: 3.676564e-01	ci right 3.786348e-01	k: 11194	n:30000
KS ci ratio: 1.065953e-01	ci left: 4.082963e-02	ci right 4.545937e-02	k: 1293	n:30000
ME3   30000 perm   6 sec   (5095 perm/sec)   p_kst 4.310000e-02   p_cons 3.731333e-01   p_joint 2.179000e-01

Joint ci ratio: 3.731061e-02	ci left: 2.122238e-01	ci right 2.203175e-01	k: 8650	n:40000
Cons ci ratio: 2.539150e-02	ci left: 3.686067e-01	ci right 3.781117e-01	k: 14934	n:40000
KS ci ratio: 9.243597e-02	ci left: 4.103278e-02	ci right 4.503391e-02	k: 1720	n:40000
ME3   40000 perm   8 sec   (4906 perm/sec)   p_kst 4.300000e-02   p_cons 3.733500e-01   p_joint 2.162500e-01

Outputting figure to mutsig2_images.part000000000103/ME3.2_1871_40000_0.043_0.37335_0.21625.png
                gene_name: ME3
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000103
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 103 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1550>
Subject: Job 4422172: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1550>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000104> was used as the working directory.
Started at Wed Oct 24 18:00:04 2012
Results reported at Wed Oct 24 21:48:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000104.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000104.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 104  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000104.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14742.72 sec.
    Max Memory :      9432 MB
    Max Swap   :     11955 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
104
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 104
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 104: processing genes 9319 - 9409
Calculating significance of each gene.
Using projection method.
9319	MED12L	9.950495e-01
9320	MED13	9.613469e-01
9321	MED13L	9.681711e-01
9322	MED14	9.840997e-01
9323	MED15	8.265667e-01
9324	MED16	8.969609e-01
9325	MED17	5.570911e-01
9326	MED18	1
9327	MED19	5.612679e-01
9328	MED20	1
9329	MED21	1
9330	MED22	1
9331	MED23	9.901840e-01
9332	MED24	1
9333	MED25	9.360837e-01
9334	MED26	1
9335	MED27	1
9336	MED28	1.777998e-01
9337	MED29	1
9338	MED30	5.628500e-01
9339	MED31	1
9340	MED4	1
9341	MED6	6.407847e-01
9342	MED7	1
9343	MED8	5.658098e-01
9344	MED9	1
9345	MEF2A	1
9346	MEF2B	8.041432e-01
9347	MEF2C	7.459380e-01
9348	MEF2D	9.563835e-01
9349	MEFV	9.876904e-01
9350	MEGF10	9.633737e-01
9351	MEGF11	1
9352	MEGF6	9.807835e-01
9353	MEGF8	9.997331e-01
9354	MEGF9	9.077374e-01
9355	MEI1	9.327656e-01
9356	MEIG1	1
9357	MEIS1	2.538520e-01
9358	MEIS2	1.401510e-01
9359	MEIS3	3.295073e-01
9360	MELK	7.702196e-01
9361	MEMO1	1
9362	MEN1	7.709850e-01
9363	MEOX1	2.548590e-01
9364	MEOX2	4.591464e-01
9365	MEP1A	1
9366	MEP1B	9.143602e-01
9367	MEPCE	7.126354e-01
9368	MEPE	3.056134e-01
9369	MERTK	1
9370	MESDC1	4.227776e-01
9371	MESDC2	7.148449e-01
9372	MESP2	1
9373	MEST	2.739631e-01
In gene MET the following bins exceed PROBCAP:
    LUAD-75-6205-TP	categ 6	N = 4307    n = 1	mu =   1.67e-07
9374	MET	7.208528e-01
9375	METAP1	2.091788e-01
9376	METAP2	9.525767e-01
9377	METRN	1
9378	METRNL	5.947761e-01
9379	METT10D	1
9380	METT11D1	3.909937e-01
9381	METT5D1	8.052194e-01
9382	METTL1	3.399073e-01
9383	METTL10	4.117024e-01
9384	METTL11A	8.049965e-01
9385	METTL12	1
9386	METTL13	8.896178e-01
9387	METTL14	1.223295e-01
9388	METTL2A	8.585195e-01
9389	METTL2B	3.589095e-01
9390	METTL3	9.205804e-01
9391	METTL4	3.462027e-01
9392	METTL5	7.036801e-01
9393	METTL6	7.613196e-01
9394	METTL7A	5.871296e-01
9395	METTL7B	2.988853e-01
9396	METTL8	1
9397	METTL9	8.033296e-01
9398	MEX3A	9.012651e-01
9399	MEX3B	3.033714e-01
9400	MEX3C	8.645782e-01
9401	MEX3D	1
9402	MFAP1	5.923545e-01
9403	MFAP2	1
9404	MFAP3	5.940591e-01
9405	MFAP3L	1
9406	MFAP4	3.571094e-01
9407	MFAP5	2.380539e-01
9408	MFF	5.043860e-01
9409	MFGE8	7.939778e-01
Done

Running MutSig 2:
Scatter job 104: processing genes 9319 - 9409
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MED12L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
Cons ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
KS ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
MED12L   10000 perm   4 sec   (2751 perm/sec)   p_kst 4.135000e-01   p_cons 2.788000e-01   p_joint 3.760000e-01

Outputting figure to mutsig2_images.part000000000104/MED12L.22_6610_10000_0.4135_0.2788_0.376.png
                gene_name: MED12L
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 2 percent done.
MEGF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
KS ci ratio: 9.481795e-03	ci left: 9.401429e-01	ci right 9.491959e-01	k: 9448	n:10000
MEGF10   10000 perm   3 sec   (3709 perm/sec)   p_kst 9.448000e-01   p_cons 2.330000e-02   p_joint 8.230000e-02

Joint ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
Cons ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
KS ci ratio: 7.262263e-03	ci left: 9.323142e-01	ci right 9.391584e-01	k: 18716	n:20000
MEGF10   20000 perm   6 sec   (3396 perm/sec)   p_kst 9.358000e-01   p_cons 1.740000e-02   p_joint 5.455000e-02

Joint ci ratio: 8.221867e-02	ci left: 6.753021e-02	ci right 7.335331e-02	k: 2112	n:30000
Cons ci ratio: 1.697411e-01	ci left: 1.598253e-02	ci right 1.897863e-02	k: 523	n:30000
KS ci ratio: 5.999427e-03	ci left: 9.315054e-01	ci right 9.371434e-01	k: 28031	n:30000
MEGF10   30000 perm   9 sec   (3286 perm/sec)   p_kst 9.343667e-01   p_cons 1.743333e-02   p_joint 7.040000e-02

Joint ci ratio: 6.375444e-02	ci left: 8.359038e-02	ci right 8.911984e-02	k: 3453	n:40000
Cons ci ratio: 1.389816e-01	ci left: 1.814326e-02	ci right 2.087713e-02	k: 779	n:40000
KS ci ratio: 5.171733e-03	ci left: 9.324636e-01	ci right 9.373231e-01	k: 37397	n:40000
MEGF10   40000 perm   12 sec   (3213 perm/sec)   p_kst 9.349250e-01   p_cons 1.947500e-02   p_joint 8.632500e-02

Joint ci ratio: 7.062359e-02	ci left: 5.598656e-02	ci right 6.010494e-02	k: 2901	n:50000
Cons ci ratio: 1.263738e-01	ci left: 1.768566e-02	ci right 2.009066e-02	k: 943	n:50000
KS ci ratio: 4.699846e-03	ci left: 9.307326e-01	ci right 9.351369e-01	k: 46648	n:50000
MEGF10   50000 perm   16 sec   (3149 perm/sec)   p_kst 9.329600e-01   p_cons 1.886000e-02   p_joint 5.802000e-02

Joint ci ratio: 6.311903e-02	ci left: 5.849037e-02	ci right 6.231895e-02	k: 3623	n:60000
Cons ci ratio: 1.148373e-01	ci left: 1.795497e-02	ci right 2.015857e-02	k: 1142	n:60000
KS ci ratio: 4.301466e-03	ci left: 9.305984e-01	ci right 9.346263e-01	k: 55958	n:60000
MEGF10   60000 perm   19 sec   (3097 perm/sec)   p_kst 9.326333e-01   p_cons 1.903333e-02   p_joint 6.038333e-02

Joint ci ratio: 5.581365e-02	ci left: 6.398831e-02	ci right 6.767635e-02	k: 4607	n:70000
Cons ci ratio: 1.065430e-01	ci left: 1.795973e-02	ci right 1.999471e-02	k: 1327	n:70000
KS ci ratio: 3.983841e-03	ci left: 9.307031e-01	ci right 9.344324e-01	k: 65281	n:70000
MEGF10   70000 perm   23 sec   (3049 perm/sec)   p_kst 9.325857e-01   p_cons 1.895714e-02   p_joint 6.581429e-02

Joint ci ratio: 5.660189e-02	ci left: 5.495927e-02	ci right 5.817298e-02	k: 4524	n:80000
Cons ci ratio: 1.026208e-01	ci left: 1.699249e-02	ci right 1.884270e-02	k: 1432	n:80000
KS ci ratio: 3.723860e-03	ci left: 9.309166e-01	ci right 9.344020e-01	k: 74614	n:80000
MEGF10   80000 perm   27 sec   (3003 perm/sec)   p_kst 9.326750e-01   p_cons 1.790000e-02   p_joint 5.655000e-02

Joint ci ratio: 4.783163e-02	ci left: 6.778100e-02	ci right 7.111348e-02	k: 6249	n:90000
Cons ci ratio: 9.715538e-02	ci left: 1.690278e-02	ci right 1.863961e-02	k: 1598	n:90000
KS ci ratio: 3.512959e-03	ci left: 9.309425e-01	ci right 9.342296e-01	k: 83934	n:90000
MEGF10   90000 perm   30 sec   (2958 perm/sec)   p_kst 9.326000e-01   p_cons 1.775556e-02   p_joint 6.943333e-02

Outputting figure to mutsig2_images.part000000000104/MEGF10.19_3519_90000_0.9326_0.017756_0.069433.png
                gene_name: MEGF10
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.071 

Current progress: 4 percent done.
MED13L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
KS ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
MED13L   10000 perm   3 sec   (3097 perm/sec)   p_kst 1.067000e-01   p_cons 6.998000e-01   p_joint 1.859000e-01

Joint ci ratio: 5.344736e-02	ci left: 2.062536e-01	ci right 2.176302e-01	k: 4238	n:20000
Cons ci ratio: 1.827743e-02	ci left: 6.905274e-01	ci right 7.033153e-01	k: 13939	n:20000
KS ci ratio: 7.789121e-02	ci left: 1.080049e-01	ci right 1.168081e-01	k: 2247	n:20000
MED13L   20000 perm   7 sec   (2894 perm/sec)   p_kst 1.123500e-01   p_cons 6.969500e-01   p_joint 2.119000e-01

Outputting figure to mutsig2_images.part000000000104/MED13L.17_6757_20000_0.11235_0.69695_0.2119.png
                gene_name: MED13L
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 6 percent done.
MET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
MET   10000 perm   3 sec   (3373 perm/sec)   p_kst 9.730000e-02   p_cons 8.100000e-03   p_joint 7.600000e-03

Joint ci ratio: 4.458536e-01	ci left: 2.995101e-03	ci right 4.753991e-03	k: 76	n:20000
Cons ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
KS ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
MET   20000 perm   6 sec   (3169 perm/sec)   p_kst 9.730000e-02   p_cons 8.300000e-03   p_joint 3.800000e-03

Joint ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
Cons ci ratio: 2.494108e-01	ci left: 7.148163e-03	ci right 9.215453e-03	k: 244	n:30000
KS ci ratio: 6.932961e-02	ci left: 9.295152e-02	ci right 9.966023e-02	k: 2888	n:30000
MET   30000 perm   10 sec   (3082 perm/sec)   p_kst 9.626667e-02   p_cons 8.133333e-03   p_joint 1.380000e-02

Joint ci ratio: 2.074191e-01	ci left: 7.931758e-03	ci right 9.790597e-03	k: 353	n:40000
Cons ci ratio: 2.162195e-01	ci left: 7.268607e-03	ci right 9.053904e-03	k: 325	n:40000
KS ci ratio: 5.972451e-02	ci left: 9.431381e-02	ci right 1.001448e-01	k: 3888	n:40000
MET   40000 perm   13 sec   (3021 perm/sec)   p_kst 9.720000e-02   p_cons 8.125000e-03   p_joint 8.825000e-03

Joint ci ratio: 2.319454e-01	ci left: 5.021268e-03	ci right 6.357106e-03	k: 283	n:50000
Cons ci ratio: 1.962039e-01	ci left: 7.142690e-03	ci right 8.715247e-03	k: 395	n:50000
KS ci ratio: 5.304095e-02	ci left: 9.586189e-02	ci right 1.011048e-01	k: 4923	n:50000
MET   50000 perm   17 sec   (2971 perm/sec)   p_kst 9.846000e-02   p_cons 7.900000e-03   p_joint 5.660000e-03

Joint ci ratio: 2.095221e-01	ci left: 5.192265e-03	ci right 6.422943e-03	k: 347	n:60000
Cons ci ratio: 1.816699e-01	ci left: 7.000225e-03	ci right 8.414684e-03	k: 461	n:60000
KS ci ratio: 4.845054e-02	ci left: 9.597838e-02	ci right 1.007605e-01	k: 5901	n:60000
MET   60000 perm   20 sec   (2928 perm/sec)   p_kst 9.835000e-02   p_cons 7.683333e-03   p_joint 5.783333e-03

Joint ci ratio: 1.137386e-01	ci left: 1.573587e-02	ci right 1.764736e-02	k: 1167	n:70000
Cons ci ratio: 1.685092e-01	ci left: 7.024726e-03	ci right 8.330867e-03	k: 536	n:70000
KS ci ratio: 4.487339e-02	ci left: 9.608990e-02	ci right 1.005149e-01	k: 6880	n:70000
MET   70000 perm   24 sec   (2885 perm/sec)   p_kst 9.828571e-02   p_cons 7.657143e-03   p_joint 1.667143e-02

Joint ci ratio: 1.236222e-01	ci left: 1.164463e-02	ci right 1.319103e-02	k: 992	n:80000
Cons ci ratio: 1.564378e-01	ci left: 7.178016e-03	ci right 8.408082e-03	k: 622	n:80000
KS ci ratio: 4.196341e-02	ci left: 9.628243e-02	ci right 1.004217e-01	k: 7867	n:80000
MET   80000 perm   28 sec   (2846 perm/sec)   p_kst 9.833750e-02   p_cons 7.775000e-03   p_joint 1.240000e-02

Joint ci ratio: 1.209668e-01	ci left: 1.083521e-02	ci right 1.224098e-02	k: 1037	n:90000
Cons ci ratio: 1.469506e-01	ci left: 7.267725e-03	ci right 8.430999e-03	k: 705	n:90000
KS ci ratio: 3.974678e-02	ci left: 9.559147e-02	ci right 9.947896e-02	k: 8777	n:90000
MET   90000 perm   32 sec   (2810 perm/sec)   p_kst 9.752222e-02   p_cons 7.833333e-03   p_joint 1.152222e-02

Joint ci ratio: 1.215114e-01	ci left: 9.673761e-03	ci right 1.093489e-02	k: 1029	n:100000
Cons ci ratio: 1.402632e-01	ci left: 7.206152e-03	ci right 8.302689e-03	k: 774	n:100000
KS ci ratio: 3.770570e-02	ci left: 9.569789e-02	ci right 9.938549e-02	k: 9753	n:100000
MET   100000 perm   36 sec   (2774 perm/sec)   p_kst 9.753000e-02   p_cons 7.740000e-03   p_joint 1.029000e-02

Joint ci ratio: 1.256997e-01	ci left: 8.212480e-03	ci right 9.322744e-03	k: 963	n:110000
Cons ci ratio: 1.346541e-01	ci left: 7.130398e-03	ci right 8.168541e-03	k: 840	n:110000
KS ci ratio: 3.592020e-02	ci left: 9.593346e-02	ci right 9.945142e-02	k: 10745	n:110000
MET   110000 perm   40 sec   (2739 perm/sec)   p_kst 9.768182e-02   p_cons 7.636364e-03   p_joint 8.754545e-03

Joint ci ratio: 1.240072e-01	ci left: 7.745962e-03	ci right 8.778014e-03	k: 990	n:120000
Cons ci ratio: 1.292381e-01	ci left: 7.116393e-03	ci right 8.107625e-03	k: 912	n:120000
KS ci ratio: 3.440059e-02	ci left: 9.595953e-02	ci right 9.932661e-02	k: 11716	n:120000
MET   120000 perm   44 sec   (2704 perm/sec)   p_kst 9.763333e-02   p_cons 7.600000e-03   p_joint 8.250000e-03

Joint ci ratio: 1.217766e-01	ci left: 7.425909e-03	ci right 8.396234e-03	k: 1027	n:130000
Cons ci ratio: 1.246824e-01	ci left: 7.075435e-03	ci right 8.023653e-03	k: 980	n:130000
KS ci ratio: 3.308631e-02	ci left: 9.583919e-02	ci right 9.907110e-02	k: 12668	n:130000
MET   130000 perm   49 sec   (2668 perm/sec)   p_kst 9.744615e-02   p_cons 7.538462e-03   p_joint 7.900000e-03

Joint ci ratio: 1.196041e-01	ci left: 7.158661e-03	ci right 8.076194e-03	k: 1065	n:140000
Cons ci ratio: 1.204611e-01	ci left: 7.054713e-03	ci right 7.965863e-03	k: 1050	n:140000
KS ci ratio: 3.194577e-02	ci left: 9.555378e-02	ci right 9.866293e-02	k: 13594	n:140000
MET   140000 perm   53 sec   (2636 perm/sec)   p_kst 9.710000e-02   p_cons 7.500000e-03   p_joint 7.607143e-03

Joint ci ratio: 1.244268e-01	ci left: 6.164157e-03	ci right 6.988423e-03	k: 985	n:150000
Cons ci ratio: 1.138602e-01	ci left: 7.393397e-03	ci right 8.292450e-03	k: 1175	n:150000
KS ci ratio: 3.082515e-02	ci left: 9.581791e-02	ci right 9.882434e-02	k: 14597	n:150000
MET   150000 perm   58 sec   (2604 perm/sec)   p_kst 9.731333e-02   p_cons 7.833333e-03   p_joint 6.566667e-03

Joint ci ratio: 1.211580e-01	ci left: 6.106019e-03	ci right 6.899522e-03	k: 1039	n:160000
Cons ci ratio: 1.106186e-01	ci left: 7.356520e-03	ci right 8.223959e-03	k: 1245	n:160000
KS ci ratio: 2.981155e-02	ci left: 9.606931e-02	ci right 9.898280e-02	k: 15603	n:160000
MET   160000 perm   62 sec   (2576 perm/sec)   p_kst 9.751875e-02   p_cons 7.781250e-03   p_joint 6.493750e-03

Joint ci ratio: 1.200825e-01	ci left: 5.855188e-03	ci right 6.608859e-03	k: 1058	n:170000
Cons ci ratio: 1.072699e-01	ci left: 7.375831e-03	ci right 8.217555e-03	k: 1324	n:170000
KS ci ratio: 2.893427e-02	ci left: 9.603539e-02	ci right 9.886071e-02	k: 16565	n:170000
MET   170000 perm   67 sec   (2548 perm/sec)   p_kst 9.744118e-02   p_cons 7.788235e-03   p_joint 6.223529e-03

Joint ci ratio: 1.044331e-01	ci left: 7.360878e-03	ci right 8.177317e-03	k: 1397	n:180000
Cons ci ratio: 1.040959e-01	ci left: 7.409584e-03	ci right 8.228609e-03	k: 1406	n:180000
KS ci ratio: 2.814349e-02	ci left: 9.592356e-02	ci right 9.866720e-02	k: 17512	n:180000
MET   180000 perm   71 sec   (2521 perm/sec)   p_kst 9.728889e-02   p_cons 7.811111e-03   p_joint 7.761111e-03

Joint ci ratio: 1.048330e-01	ci left: 6.922127e-03	ci right 7.693020e-03	k: 1387	n:190000
Cons ci ratio: 1.011196e-01	ci left: 7.450374e-03	ci right 8.248962e-03	k: 1490	n:190000
KS ci ratio: 2.739117e-02	ci left: 9.597092e-02	ci right 9.864138e-02	k: 18487	n:190000
MET   190000 perm   76 sec   (2493 perm/sec)   p_kst 9.730000e-02   p_cons 7.842105e-03   p_joint 7.300000e-03

Joint ci ratio: 1.051963e-01	ci left: 6.532134e-03	ci right 7.262268e-03	k: 1378	n:200000
Cons ci ratio: 9.857421e-02	ci left: 7.458118e-03	ci right 8.236249e-03	k: 1568	n:200000
KS ci ratio: 2.668930e-02	ci left: 9.605916e-02	ci right 9.866253e-02	k: 19471	n:200000
MET   200000 perm   81 sec   (2466 perm/sec)   p_kst 9.735500e-02   p_cons 7.840000e-03   p_joint 6.890000e-03

Joint ci ratio: 8.801614e-02	ci left: 8.945104e-03	ci right 9.773286e-03	k: 1964	n:210000
Cons ci ratio: 9.641856e-02	ci left: 7.432816e-03	ci right 8.190389e-03	k: 1639	n:210000
KS ci ratio: 2.603312e-02	ci left: 9.617765e-02	ci right 9.871918e-02	k: 20463	n:210000
MET   210000 perm   86 sec   (2439 perm/sec)   p_kst 9.744286e-02   p_cons 7.804762e-03   p_joint 9.352381e-03

Outputting figure to mutsig2_images.part000000000104/MET.12_4307_210000_0.097443_0.0078048_0.0093524.png
                gene_name: MET
               theta_stop: 0.096 
                    nperm: 210000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.0078 
      ci_cons_bounds_left: 0.0074 
     ci_cons_bounds_right: 0.0082 
                  p_joint: 0.0094 
     ci_joint_bounds_left: 0.0089 
    ci_joint_bounds_right: 0.0098 

Current progress: 8 percent done.
MED13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
Cons ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
KS ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
MED13   10000 perm   3 sec   (3161 perm/sec)   p_kst 8.002000e-01   p_cons 1.334000e-01   p_joint 4.395000e-01

Outputting figure to mutsig2_images.part000000000104/MED13.10_6645_10000_0.8002_0.1334_0.4395.png
                gene_name: MED13
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 10 percent done.
MEIS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 2.605321e-03	ci left: 9.942123e-01	ci right 9.968864e-01	k: 9957	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
MEIS2   10000 perm   2 sec   (5473 perm/sec)   p_kst 1.070000e-02   p_cons 9.957000e-01   p_joint 2.330000e-02

Joint ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
Cons ci ratio: 1.722998e-03	ci left: 9.952460e-01	ci right 9.970049e-01	k: 19924	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
MEIS2   20000 perm   4 sec   (4854 perm/sec)   p_kst 1.045000e-02   p_cons 9.962000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.401893e-01	ci left: 2.361682e-02	ci right 2.720923e-02	k: 761	n:30000
Cons ci ratio: 1.397680e-03	ci left: 9.954732e-01	ci right 9.968948e-01	k: 29887	n:30000
KS ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
MEIS2   30000 perm   7 sec   (4596 perm/sec)   p_kst 1.063333e-02   p_cons 9.962333e-01   p_joint 2.536667e-02

Joint ci ratio: 1.286758e-01	ci left: 2.121417e-02	ci right 2.415569e-02	k: 906	n:40000
Cons ci ratio: 1.194358e-03	ci left: 9.956820e-01	ci right 9.968942e-01	k: 39853	n:40000
KS ci ratio: 1.886845e-01	ci left: 9.667217e-03	ci right 1.170476e-02	k: 426	n:40000
MEIS2   40000 perm   9 sec   (4448 perm/sec)   p_kst 1.065000e-02   p_cons 9.963250e-01   p_joint 2.265000e-02

Joint ci ratio: 1.172661e-01	ci left: 2.057668e-02	ci right 2.315924e-02	k: 1092	n:50000
Cons ci ratio: 1.079811e-03	ci left: 9.956637e-01	ci right 9.967575e-01	k: 49812	n:50000
KS ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
MEIS2   50000 perm   12 sec   (4321 perm/sec)   p_kst 1.042000e-02   p_cons 9.962400e-01   p_joint 2.184000e-02

Joint ci ratio: 1.085215e-01	ci left: 2.012714e-02	ci right 2.245282e-02	k: 1276	n:60000
Cons ci ratio: 9.861721e-04	ci left: 9.957100e-01	ci right 9.967077e-01	k: 59774	n:60000
KS ci ratio: 1.557283e-01	ci left: 9.635717e-03	ci right 1.127882e-02	k: 626	n:60000
MEIS2   60000 perm   14 sec   (4233 perm/sec)   p_kst 1.043333e-02   p_cons 9.962333e-01   p_joint 2.126667e-02

Joint ci ratio: 1.138874e-01	ci left: 1.569421e-02	ci right 1.760330e-02	k: 1164	n:70000
Cons ci ratio: 9.115804e-04	ci left: 9.957613e-01	ci right 9.966825e-01	k: 69737	n:70000
KS ci ratio: 1.448282e-01	ci left: 9.606582e-03	ci right 1.112013e-02	k: 724	n:70000
MEIS2   70000 perm   17 sec   (4138 perm/sec)   p_kst 1.034286e-02   p_cons 9.962429e-01   p_joint 1.662857e-02

Joint ci ratio: 9.795571e-02	ci left: 1.866282e-02	ci right 2.059724e-02	k: 1569	n:80000
Cons ci ratio: 8.431323e-04	ci left: 9.958809e-01	ci right 9.967325e-01	k: 79706	n:80000
KS ci ratio: 1.369495e-01	ci left: 9.442829e-03	ci right 1.084304e-02	k: 810	n:80000
MEIS2   80000 perm   20 sec   (4061 perm/sec)   p_kst 1.012500e-02   p_cons 9.963250e-01   p_joint 1.961250e-02

Joint ci ratio: 1.022905e-01	ci left: 1.523364e-02	ci right 1.688665e-02	k: 1444	n:90000
Cons ci ratio: 7.938630e-04	ci left: 9.959165e-01	ci right 9.967177e-01	k: 89670	n:90000
KS ci ratio: 1.303038e-01	ci left: 9.306465e-03	ci right 1.061430e-02	k: 895	n:90000
MEIS2   90000 perm   23 sec   (3985 perm/sec)   p_kst 9.944444e-03   p_cons 9.963333e-01   p_joint 1.604444e-02

Joint ci ratio: 1.046380e-01	ci left: 1.311530e-02	ci right 1.457310e-02	k: 1383	n:100000
Cons ci ratio: 7.635605e-04	ci left: 9.958304e-01	ci right 9.966004e-01	k: 99623	n:100000
KS ci ratio: 1.240302e-01	ci left: 9.276234e-03	ci right 1.051244e-02	k: 988	n:100000
MEIS2   100000 perm   26 sec   (3914 perm/sec)   p_kst 9.880000e-03   p_cons 9.962300e-01   p_joint 1.383000e-02

Joint ci ratio: 9.759418e-02	ci left: 1.374862e-02	ci right 1.516806e-02	k: 1589	n:110000
Cons ci ratio: 7.308348e-04	ci left: 9.958185e-01	ci right 9.965550e-01	k: 109582	n:110000
KS ci ratio: 1.181979e-01	ci left: 9.314508e-03	ci right 1.049337e-02	k: 1088	n:110000
MEIS2   110000 perm   29 sec   (3843 perm/sec)   p_kst 9.890909e-03   p_cons 9.962000e-01   p_joint 1.444545e-02

Joint ci ratio: 9.640192e-02	ci left: 1.293602e-02	ci right 1.425431e-02	k: 1630	n:120000
Cons ci ratio: 6.996525e-04	ci left: 9.958354e-01	ci right 9.965402e-01	k: 119544	n:120000
KS ci ratio: 1.139925e-01	ci left: 9.201760e-03	ci right 1.032212e-02	k: 1170	n:120000
MEIS2   120000 perm   32 sec   (3776 perm/sec)   p_kst 9.750000e-03   p_cons 9.962000e-01   p_joint 1.358333e-02

Joint ci ratio: 9.251169e-02	ci left: 1.299244e-02	ci right 1.426016e-02	k: 1770	n:130000
Cons ci ratio: 6.687325e-04	ci left: 9.958905e-01	ci right 9.965640e-01	k: 129511	n:130000
KS ci ratio: 1.091986e-01	ci left: 9.279105e-03	ci right 1.035831e-02	k: 1275	n:130000
MEIS2   130000 perm   35 sec   (3712 perm/sec)   p_kst 9.807692e-03   p_cons 9.962385e-01   p_joint 1.361538e-02

Joint ci ratio: 8.634881e-02	ci left: 1.388032e-02	ci right 1.513990e-02	k: 2030	n:140000
Cons ci ratio: 6.433696e-04	ci left: 9.959158e-01	ci right 9.965634e-01	k: 139475	n:140000
KS ci ratio: 1.051938e-01	ci left: 9.304503e-03	ci right 1.034452e-02	k: 1374	n:140000
MEIS2   140000 perm   38 sec   (3652 perm/sec)   p_kst 9.814286e-03   p_cons 9.962500e-01   p_joint 1.450000e-02

Joint ci ratio: 7.866059e-02	ci left: 1.564561e-02	ci right 1.693319e-02	k: 2442	n:150000
Cons ci ratio: 6.234498e-04	ci left: 9.959033e-01	ci right 9.965306e-01	k: 149434	n:150000
KS ci ratio: 1.014952e-01	ci left: 9.346639e-03	ci right 1.035244e-02	k: 1476	n:150000
MEIS2   150000 perm   42 sec   (3592 perm/sec)   p_kst 9.840000e-03   p_cons 9.962267e-01   p_joint 1.628000e-02

Joint ci ratio: 7.630980e-02	ci left: 1.560547e-02	ci right 1.684965e-02	k: 2595	n:160000
Cons ci ratio: 6.042541e-04	ci left: 9.959057e-01	ci right 9.965136e-01	k: 159395	n:160000
KS ci ratio: 9.847667e-02	ci left: 9.323090e-03	ci right 1.029480e-02	k: 1568	n:160000
MEIS2   160000 perm   45 sec   (3534 perm/sec)   p_kst 9.800000e-03   p_cons 9.962188e-01   p_joint 1.621875e-02

Outputting figure to mutsig2_images.part000000000104/MEIS2.8_1545_160000_0.0098_0.99622_0.016219.png
                gene_name: MEIS2
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 12 percent done.
MEPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
Cons ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
KS ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
MEPE   10000 perm   2 sec   (5050 perm/sec)   p_kst 3.928000e-01   p_cons 5.189000e-01   p_joint 6.196000e-01

Outputting figure to mutsig2_images.part000000000104/MEPE.8_1590_10000_0.3928_0.5189_0.6196.png
                gene_name: MEPE
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
MEP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
MEP1A   10000 perm   2 sec   (4809 perm/sec)   p_kst 2.690000e-02   p_cons 6.832000e-01   p_joint 1.309000e-01

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 1.935139e-02	ci left: 6.657452e-01	ci right 6.788047e-01	k: 13446	n:20000
KS ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
MEP1A   20000 perm   5 sec   (4292 perm/sec)   p_kst 2.775000e-02   p_cons 6.723000e-01   p_joint 6.510000e-02

Joint ci ratio: 1.014577e-01	ci left: 4.499019e-02	ci right 4.983127e-02	k: 1421	n:30000
Cons ci ratio: 1.586272e-02	ci left: 6.652151e-01	ci right 6.758851e-01	k: 20117	n:30000
KS ci ratio: 1.340017e-01	ci left: 2.587211e-02	ci right 2.962009e-02	k: 831	n:30000
MEP1A   30000 perm   7 sec   (4128 perm/sec)   p_kst 2.770000e-02   p_cons 6.705667e-01   p_joint 4.736667e-02

Joint ci ratio: 8.368618e-02	ci left: 4.981976e-02	ci right 5.419557e-02	k: 2079	n:40000
Cons ci ratio: 1.374667e-02	ci left: 6.656432e-01	ci right 6.748820e-01	k: 26811	n:40000
KS ci ratio: 1.158525e-01	ci left: 2.621077e-02	ci right 2.945827e-02	k: 1112	n:40000
MEP1A   40000 perm   10 sec   (4010 perm/sec)   p_kst 2.780000e-02   p_cons 6.702750e-01   p_joint 5.197500e-02

Joint ci ratio: 6.649943e-02	ci left: 6.281507e-02	ci right 6.715561e-02	k: 3248	n:50000
Cons ci ratio: 1.223471e-02	ci left: 6.683264e-01	ci right 6.765736e-01	k: 33623	n:50000
KS ci ratio: 1.027235e-01	ci left: 2.684441e-02	ci right 2.977070e-02	k: 1414	n:50000
MEP1A   50000 perm   13 sec   (3921 perm/sec)   p_kst 2.828000e-02   p_cons 6.724600e-01   p_joint 6.496000e-02

Joint ci ratio: 6.229978e-02	ci left: 5.996831e-02	ci right 6.384087e-02	k: 3713	n:60000
Cons ci ratio: 1.114787e-02	ci left: 6.695139e-01	ci right 6.770360e-01	k: 40397	n:60000
KS ci ratio: 9.490100e-02	ci left: 2.633628e-02	ci right 2.897634e-02	k: 1658	n:60000
MEP1A   60000 perm   16 sec   (3838 perm/sec)   p_kst 2.763333e-02   p_cons 6.732833e-01   p_joint 6.188333e-02

Outputting figure to mutsig2_images.part000000000104/MEP1A.7_2297_60000_0.027633_0.67328_0.061883.png
                gene_name: MEP1A
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 16 percent done.
MERTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
Cons ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
MERTK   10000 perm   2 sec   (4771 perm/sec)   p_kst 1.380000e-01   p_cons 3.889000e-01   p_joint 3.127000e-01

Outputting figure to mutsig2_images.part000000000104/MERTK.7_3076_10000_0.138_0.3889_0.3127.png
                gene_name: MERTK
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
MEFV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
Cons ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
KS ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
MEFV   10000 perm   2 sec   (4641 perm/sec)   p_kst 2.208000e-01   p_cons 7.155000e-01   p_joint 3.368000e-01

Outputting figure to mutsig2_images.part000000000104/MEFV.6_2386_10000_0.2208_0.7155_0.3368.png
                gene_name: MEFV
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
MEGF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
MEGF8   10000 perm   3 sec   (3147 perm/sec)   p_kst 8.620000e-02   p_cons 7.870000e-02   p_joint 3.610000e-02

Joint ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
Cons ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
KS ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
MEGF8   20000 perm   7 sec   (2836 perm/sec)   p_kst 9.060000e-02   p_cons 8.515000e-02   p_joint 3.245000e-02

Joint ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
Cons ci ratio: 7.157206e-02	ci left: 8.763733e-02	ci right 9.417548e-02	k: 2726	n:30000
KS ci ratio: 7.255679e-02	ci left: 8.544049e-02	ci right 9.190609e-02	k: 2659	n:30000
MEGF8   30000 perm   11 sec   (2753 perm/sec)   p_kst 8.863333e-02   p_cons 9.086667e-02   p_joint 5.593333e-02

Outputting figure to mutsig2_images.part000000000104/MEGF8.6_8501_30000_0.088633_0.090867_0.055933.png
                gene_name: MEGF8
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.059 

Current progress: 22 percent done.
METTL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
Cons ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
KS ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
METTL13   10000 perm   2 sec   (4929 perm/sec)   p_kst 2.093000e-01   p_cons 4.526000e-01   p_joint 3.458000e-01

Outputting figure to mutsig2_images.part000000000104/METTL13.5_2132_10000_0.2093_0.4526_0.3458.png
                gene_name: METTL13
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 24 percent done.
METTL2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
METTL2B   10000 perm   2 sec   (5665 perm/sec)   p_kst 1.021000e-01   p_cons 1.500000e-03   p_joint 6.440000e-02

Joint ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
Cons ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
KS ci ratio: 8.127078e-02	ci left: 9.994945e-02	ci right 1.084660e-01	k: 2083	n:20000
METTL2B   20000 perm   4 sec   (4955 perm/sec)   p_kst 1.041500e-01   p_cons 2.200000e-03   p_joint 1.730000e-02

Joint ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
Cons ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
KS ci ratio: 6.625132e-02	ci left: 1.010273e-01	ci right 1.079828e-01	k: 3134	n:30000
METTL2B   30000 perm   6 sec   (4724 perm/sec)   p_kst 1.044667e-01   p_cons 1.233333e-03   p_joint 8.800000e-03

Joint ci ratio: 2.321912e-01	ci left: 6.253518e-03	ci right 7.919248e-03	k: 282	n:40000
Cons ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
KS ci ratio: 5.717714e-02	ci left: 1.021355e-01	ci right 1.081720e-01	k: 4205	n:40000
METTL2B   40000 perm   9 sec   (4582 perm/sec)   p_kst 1.051250e-01   p_cons 1.500000e-03   p_joint 7.050000e-03

Joint ci ratio: 1.371304e-01	ci left: 1.497632e-02	ci right 1.720038e-02	k: 803	n:50000
Cons ci ratio: 4.648834e-01	ci left: 1.091526e-03	ci right 1.768490e-03	k: 70	n:50000
KS ci ratio: 5.114904e-02	ci left: 1.024248e-01	ci right 1.078211e-01	k: 5255	n:50000
METTL2B   50000 perm   11 sec   (4481 perm/sec)   p_kst 1.051000e-01   p_cons 1.400000e-03   p_joint 1.606000e-02

Joint ci ratio: 1.338981e-01	ci left: 1.313959e-02	ci right 1.504117e-02	k: 844	n:60000
Cons ci ratio: 4.199598e-01	ci left: 1.146637e-03	ci right 1.769857e-03	k: 86	n:60000
KS ci ratio: 4.685123e-02	ci left: 1.020301e-01	ci right 1.069415e-01	k: 6268	n:60000
METTL2B   60000 perm   14 sec   (4389 perm/sec)   p_kst 1.044667e-01   p_cons 1.433333e-03   p_joint 1.406667e-02

Joint ci ratio: 1.337946e-01	ci left: 1.130320e-02	ci right 1.293762e-02	k: 847	n:70000
Cons ci ratio: 4.019076e-01	ci left: 1.085297e-03	ci right 1.643070e-03	k: 94	n:70000
KS ci ratio: 4.342504e-02	ci left: 1.020026e-01	ci right 1.065445e-01	k: 7298	n:70000
METTL2B   70000 perm   16 sec   (4300 perm/sec)   p_kst 1.042571e-01   p_cons 1.342857e-03   p_joint 1.210000e-02

Joint ci ratio: 1.347022e-01	ci left: 9.768969e-03	ci right 1.119187e-02	k: 837	n:80000
Cons ci ratio: 3.787048e-01	ci left: 1.084925e-03	ci right 1.602327e-03	k: 106	n:80000
KS ci ratio: 4.053021e-02	ci left: 1.025617e-01	ci right 1.068170e-01	k: 8374	n:80000
METTL2B   80000 perm   19 sec   (4215 perm/sec)   p_kst 1.046750e-01   p_cons 1.325000e-03   p_joint 1.046250e-02

Joint ci ratio: 1.082711e-01	ci left: 1.357773e-02	ci right 1.514269e-02	k: 1291	n:90000
Cons ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
KS ci ratio: 3.814645e-02	ci left: 1.030044e-01	ci right 1.070211e-01	k: 9450	n:90000
METTL2B   90000 perm   22 sec   (4135 perm/sec)   p_kst 1.050000e-01   p_cons 1.355556e-03   p_joint 1.434444e-02

Joint ci ratio: 1.021232e-01	ci left: 1.377795e-02	ci right 1.527040e-02	k: 1451	n:100000
Cons ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
KS ci ratio: 3.625668e-02	ci left: 1.027593e-01	ci right 1.065637e-01	k: 10465	n:100000
METTL2B   100000 perm   25 sec   (4060 perm/sec)   p_kst 1.046500e-01   p_cons 1.330000e-03   p_joint 1.451000e-02

Joint ci ratio: 8.461794e-02	ci left: 1.832598e-02	ci right 1.995405e-02	k: 2104	n:110000
Cons ci ratio: 3.242047e-01	ci left: 1.112472e-03	ci right 1.550863e-03	k: 145	n:110000
KS ci ratio: 3.453524e-02	ci left: 1.030319e-01	ci right 1.066617e-01	k: 11532	n:110000
METTL2B   110000 perm   28 sec   (3974 perm/sec)   p_kst 1.048364e-01   p_cons 1.318182e-03   p_joint 1.912727e-02

Joint ci ratio: 8.214158e-02	ci left: 1.785938e-02	ci right 1.939734e-02	k: 2234	n:120000
Cons ci ratio: 3.136458e-01	ci left: 1.096429e-03	ci right 1.511608e-03	k: 155	n:120000
KS ci ratio: 3.300998e-02	ci left: 1.034198e-01	ci right 1.068993e-01	k: 12618	n:120000
METTL2B   120000 perm   31 sec   (3892 perm/sec)   p_kst 1.051500e-01   p_cons 1.291667e-03   p_joint 1.861667e-02

Joint ci ratio: 8.340573e-02	ci left: 1.601036e-02	ci right 1.741132e-02	k: 2171	n:130000
Cons ci ratio: 3.031426e-01	ci left: 1.090157e-03	ci right 1.486473e-03	k: 166	n:130000
KS ci ratio: 3.174688e-02	ci left: 1.033004e-01	ci right 1.066403e-01	k: 13645	n:130000
METTL2B   130000 perm   34 sec   (3825 perm/sec)   p_kst 1.049615e-01   p_cons 1.276923e-03   p_joint 1.670000e-02

Joint ci ratio: 9.415880e-02	ci left: 1.165244e-02	ci right 1.281075e-02	k: 1711	n:140000
Cons ci ratio: 2.864663e-01	ci left: 1.144594e-03	ci right 1.533673e-03	k: 186	n:140000
KS ci ratio: 3.055803e-02	ci left: 1.035691e-01	ci right 1.067901e-01	k: 14724	n:140000
METTL2B   140000 perm   37 sec   (3764 perm/sec)   p_kst 1.051714e-01   p_cons 1.328571e-03   p_joint 1.222143e-02

Joint ci ratio: 9.275601e-02	ci left: 1.122057e-02	ci right 1.231843e-02	k: 1764	n:150000
Cons ci ratio: 2.805336e-01	ci left: 1.117828e-03	ci right 1.488547e-03	k: 194	n:150000
KS ci ratio: 2.950180e-02	ci left: 1.037510e-01	ci right 1.068643e-01	k: 15795	n:150000
METTL2B   150000 perm   41 sec   (3704 perm/sec)   p_kst 1.053000e-01   p_cons 1.293333e-03   p_joint 1.176000e-02

Joint ci ratio: 1.092139e-01	ci left: 7.551062e-03	ci right 8.429407e-03	k: 1277	n:160000
Cons ci ratio: 2.696851e-01	ci left: 1.141070e-03	ci right 1.502389e-03	k: 210	n:160000
KS ci ratio: 2.851685e-02	ci left: 1.041168e-01	ci right 1.071350e-01	k: 16899	n:160000
METTL2B   160000 perm   44 sec   (3645 perm/sec)   p_kst 1.056187e-01   p_cons 1.312500e-03   p_joint 7.981250e-03

Joint ci ratio: 7.660192e-02	ci left: 1.458912e-02	ci right 1.575692e-02	k: 2578	n:170000
Cons ci ratio: 2.571842e-01	ci left: 1.189328e-03	ci right 1.545672e-03	k: 231	n:170000
KS ci ratio: 2.768200e-02	ci left: 1.040493e-01	ci right 1.069759e-01	k: 17936	n:170000
METTL2B   170000 perm   48 sec   (3575 perm/sec)   p_kst 1.055059e-01   p_cons 1.358824e-03   p_joint 1.516471e-02

Joint ci ratio: 7.735294e-02	ci left: 1.352224e-02	ci right 1.461572e-02	k: 2531	n:180000
Cons ci ratio: 2.507814e-01	ci left: 1.185678e-03	ci right 1.530703e-03	k: 243	n:180000
KS ci ratio: 2.689900e-02	ci left: 1.041120e-01	ci right 1.069562e-01	k: 18995	n:180000
METTL2B   180000 perm   51 sec   (3521 perm/sec)   p_kst 1.055278e-01   p_cons 1.350000e-03   p_joint 1.406111e-02

Joint ci ratio: 7.547143e-02	ci left: 1.347134e-02	ci right 1.453304e-02	k: 2659	n:190000
Cons ci ratio: 2.462835e-01	ci left: 1.167691e-03	ci right 1.500455e-03	k: 252	n:190000
KS ci ratio: 2.615484e-02	ci left: 1.043419e-01	ci right 1.071123e-01	k: 20087	n:190000
METTL2B   190000 perm   55 sec   (3467 perm/sec)   p_kst 1.057211e-01   p_cons 1.326316e-03   p_joint 1.399474e-02

Joint ci ratio: 7.643559e-02	ci left: 1.248360e-02	ci right 1.348059e-02	k: 2595	n:200000
Cons ci ratio: 2.415580e-01	ci left: 1.156250e-03	ci right 1.478483e-03	k: 262	n:200000
KS ci ratio: 2.548401e-02	ci left: 1.044403e-01	ci right 1.071411e-01	k: 21157	n:200000
METTL2B   200000 perm   59 sec   (3415 perm/sec)   p_kst 1.057850e-01   p_cons 1.310000e-03   p_joint 1.297500e-02

Joint ci ratio: 7.613356e-02	ci left: 1.199179e-02	ci right 1.294554e-02	k: 2617	n:210000
Cons ci ratio: 2.345278e-01	ci left: 1.172839e-03	ci right 1.488803e-03	k: 278	n:210000
KS ci ratio: 2.488043e-02	ci left: 1.043928e-01	ci right 1.070276e-01	k: 22198	n:210000
METTL2B   210000 perm   63 sec   (3360 perm/sec)   p_kst 1.057048e-01   p_cons 1.323810e-03   p_joint 1.246190e-02

Joint ci ratio: 7.567418e-02	ci left: 1.159377e-02	ci right 1.251006e-02	k: 2650	n:220000
Cons ci ratio: 2.269251e-01	ci left: 1.200903e-03	ci right 1.512473e-03	k: 297	n:220000
KS ci ratio: 2.432892e-02	ci left: 1.042645e-01	ci right 1.068368e-01	k: 23220	n:220000
METTL2B   220000 perm   66 sec   (3312 perm/sec)   p_kst 1.055455e-01   p_cons 1.350000e-03   p_joint 1.204545e-02

Joint ci ratio: 8.007127e-02	ci left: 9.899905e-03	ci right 1.072990e-02	k: 2371	n:230000
Cons ci ratio: 2.214202e-01	ci left: 1.210246e-03	ci right 1.515586e-03	k: 312	n:230000
KS ci ratio: 2.380540e-02	ci left: 1.042041e-01	ci right 1.067189e-01	k: 24255	n:230000
METTL2B   230000 perm   71 sec   (3262 perm/sec)   p_kst 1.054565e-01   p_cons 1.356522e-03   p_joint 1.030870e-02

Joint ci ratio: 8.378842e-02	ci left: 8.658662e-03	ci right 9.419933e-03	k: 2168	n:240000
Cons ci ratio: 2.156400e-01	ci left: 1.226777e-03	ci right 1.527139e-03	k: 329	n:240000
KS ci ratio: 2.330037e-02	ci left: 1.042612e-01	ci right 1.067233e-01	k: 25317	n:240000
METTL2B   240000 perm   75 sec   (3211 perm/sec)   p_kst 1.054875e-01   p_cons 1.370833e-03   p_joint 9.033333e-03

Joint ci ratio: 8.439446e-02	ci left: 8.194756e-03	ci right 8.920706e-03	k: 2138	n:250000
Cons ci ratio: 2.108996e-01	ci left: 1.234502e-03	ci right 1.529252e-03	k: 344	n:250000
KS ci ratio: 2.283635e-02	ci left: 1.042307e-01	ci right 1.066424e-01	k: 26358	n:250000
METTL2B   250000 perm   79 sec   (3166 perm/sec)   p_kst 1.054320e-01   p_cons 1.376000e-03   p_joint 8.552000e-03

Joint ci ratio: 9.658049e-02	ci left: 5.991953e-03	ci right 6.603746e-03	k: 1636	n:260000
Cons ci ratio: 2.067464e-01	ci left: 1.238052e-03	ci right 1.527093e-03	k: 358	n:260000
KS ci ratio: 2.240081e-02	ci left: 1.041877e-01	ci right 1.065518e-01	k: 27395	n:260000
METTL2B   260000 perm   83 sec   (3123 perm/sec)   p_kst 1.053654e-01   p_cons 1.376923e-03   p_joint 6.292308e-03

Joint ci ratio: 9.483016e-02	ci left: 5.990547e-03	ci right 6.590496e-03	k: 1697	n:270000
Cons ci ratio: 2.044828e-01	ci left: 1.220301e-03	ci right 1.501688e-03	k: 366	n:270000
KS ci ratio: 2.197417e-02	ci left: 1.042773e-01	ci right 1.065978e-01	k: 28467	n:270000
METTL2B   270000 perm   88 sec   (3076 perm/sec)   p_kst 1.054333e-01   p_cons 1.355556e-03   p_joint 6.285185e-03

Joint ci ratio: 7.454779e-02	ci left: 9.413882e-03	ci right 1.014632e-02	k: 2737	n:280000
Cons ci ratio: 2.014865e-01	ci left: 1.214008e-03	ci right 1.489337e-03	k: 377	n:280000
KS ci ratio: 2.156856e-02	ci left: 1.043822e-01	ci right 1.066617e-01	k: 29545	n:280000
METTL2B   280000 perm   92 sec   (3037 perm/sec)   p_kst 1.055179e-01   p_cons 1.346429e-03   p_joint 9.775000e-03

Joint ci ratio: 6.750836e-02	ci left: 1.110494e-02	ci right 1.188418e-02	k: 3332	n:290000
Cons ci ratio: 1.988743e-01	ci left: 1.204899e-03	ci right 1.474190e-03	k: 387	n:290000
KS ci ratio: 2.120978e-02	ci left: 1.042572e-01	ci right 1.064955e-01	k: 30558	n:290000
METTL2B   290000 perm   97 sec   (2998 perm/sec)   p_kst 1.053724e-01   p_cons 1.334483e-03   p_joint 1.148966e-02

Joint ci ratio: 6.621776e-02	ci left: 1.116415e-02	ci right 1.193199e-02	k: 3463	n:300000
Cons ci ratio: 1.966086e-01	ci left: 1.193250e-03	ci right 1.456535e-03	k: 396	n:300000
KS ci ratio: 2.085652e-02	ci left: 1.042469e-01	ci right 1.064474e-01	k: 31603	n:300000
METTL2B   300000 perm   101 sec   (2960 perm/sec)   p_kst 1.053433e-01   p_cons 1.320000e-03   p_joint 1.154333e-02

Joint ci ratio: 6.898134e-02	ci left: 9.953895e-03	ci right 1.066821e-02	k: 3195	n:310000
Cons ci ratio: 1.932308e-01	ci left: 1.197716e-03	ci right 1.456912e-03	k: 410	n:310000
KS ci ratio: 2.050981e-02	ci left: 1.043340e-01	ci right 1.064992e-01	k: 32678	n:310000
METTL2B   310000 perm   106 sec   (2922 perm/sec)   p_kst 1.054129e-01   p_cons 1.322581e-03   p_joint 1.030645e-02

Joint ci ratio: 6.926674e-02	ci left: 9.565996e-03	ci right 1.025542e-02	k: 3170	n:320000
Cons ci ratio: 1.913788e-01	ci left: 1.184083e-03	ci right 1.437587e-03	k: 418	n:320000
KS ci ratio: 2.018251e-02	ci left: 1.043910e-01	ci right 1.065224e-01	k: 33745	n:320000
METTL2B   320000 perm   111 sec   (2886 perm/sec)   p_kst 1.054531e-01   p_cons 1.306250e-03   p_joint 9.906250e-03

Joint ci ratio: 6.657414e-02	ci left: 1.005070e-02	ci right 1.074582e-02	k: 3430	n:330000
Cons ci ratio: 1.882593e-01	ci left: 1.188610e-03	ci right 1.438461e-03	k: 432	n:330000
KS ci ratio: 1.986912e-02	ci left: 1.044569e-01	ci right 1.065561e-01	k: 34816	n:330000
METTL2B   330000 perm   116 sec   (2849 perm/sec)   p_kst 1.055030e-01   p_cons 1.309091e-03   p_joint 1.039394e-02

Joint ci ratio: 6.555006e-02	ci left: 1.006749e-02	ci right 1.075265e-02	k: 3538	n:340000
Cons ci ratio: 1.859132e-01	ci left: 1.184488e-03	ci right 1.430020e-03	k: 443	n:340000
KS ci ratio: 1.959095e-02	ci left: 1.043170e-01	ci right 1.063838e-01	k: 35818	n:340000
METTL2B   340000 perm   121 sec   (2814 perm/sec)   p_kst 1.053471e-01   p_cons 1.302941e-03   p_joint 1.040588e-02

Joint ci ratio: 5.510121e-02	ci left: 1.386136e-02	ci right 1.464957e-02	k: 4988	n:350000
Cons ci ratio: 1.830494e-01	ci left: 1.188799e-03	ci right 1.431007e-03	k: 457	n:350000
KS ci ratio: 1.930130e-02	ci left: 1.044073e-01	ci right 1.064450e-01	k: 36898	n:350000
METTL2B   350000 perm   126 sec   (2774 perm/sec)   p_kst 1.054229e-01   p_cons 1.305714e-03   p_joint 1.425143e-02

Joint ci ratio: 5.440340e-02	ci left: 1.382974e-02	ci right 1.460589e-02	k: 5117	n:360000
Cons ci ratio: 1.806978e-01	ci left: 1.187592e-03	ci right 1.426107e-03	k: 469	n:360000
KS ci ratio: 1.903141e-02	ci left: 1.044208e-01	ci right 1.064300e-01	k: 37952	n:360000
METTL2B   360000 perm   131 sec   (2740 perm/sec)   p_kst 1.054222e-01   p_cons 1.302778e-03   p_joint 1.421389e-02

Joint ci ratio: 5.379388e-02	ci left: 1.376789e-02	ci right 1.453164e-02	k: 5234	n:370000
Cons ci ratio: 1.776978e-01	ci left: 1.196799e-03	ci right 1.432743e-03	k: 485	n:370000
KS ci ratio: 1.877307e-02	ci left: 1.044285e-01	ci right 1.064101e-01	k: 39004	n:370000
METTL2B   370000 perm   137 sec   (2709 perm/sec)   p_kst 1.054162e-01   p_cons 1.310811e-03   p_joint 1.414595e-02

Joint ci ratio: 5.858486e-02	ci left: 1.130346e-02	ci right 1.198823e-02	k: 4424	n:380000
Cons ci ratio: 1.755440e-01	ci left: 1.195487e-03	ci right 1.428013e-03	k: 497	n:380000
KS ci ratio: 1.852498e-02	ci left: 1.044359e-01	ci right 1.063912e-01	k: 40056	n:380000
METTL2B   380000 perm   142 sec   (2676 perm/sec)   p_kst 1.054105e-01   p_cons 1.307895e-03   p_joint 1.164211e-02

Joint ci ratio: 5.784467e-02	ci left: 1.130168e-02	ci right 1.197740e-02	k: 4538	n:390000
Cons ci ratio: 1.744976e-01	ci left: 1.179544e-03	ci right 1.407457e-03	k: 503	n:390000
KS ci ratio: 1.828895e-02	ci left: 1.044175e-01	ci right 1.063473e-01	k: 41098	n:390000
METTL2B   390000 perm   147 sec   (2646 perm/sec)   p_kst 1.053795e-01   p_cons 1.289744e-03   p_joint 1.163590e-02

Joint ci ratio: 6.073360e-02	ci left: 9.994338e-03	ci right 1.062279e-02	k: 4122	n:400000
Cons ci ratio: 1.726244e-01	ci left: 1.176360e-03	ci right 1.400964e-03	k: 514	n:400000
KS ci ratio: 1.805215e-02	ci left: 1.044998e-01	ci right 1.064059e-01	k: 42180	n:400000
METTL2B   400000 perm   153 sec   (2615 perm/sec)   p_kst 1.054500e-01   p_cons 1.285000e-03   p_joint 1.030500e-02

Joint ci ratio: 5.059157e-02	ci left: 1.406646e-02	ci right 1.479896e-02	k: 5916	n:410000
Cons ci ratio: 1.711363e-01	ci left: 1.168675e-03	ci right 1.389689e-03	k: 523	n:410000
KS ci ratio: 1.783030e-02	ci left: 1.045151e-01	ci right 1.063978e-01	k: 43236	n:410000
METTL2B   410000 perm   159 sec   (2586 perm/sec)   p_kst 1.054537e-01   p_cons 1.275610e-03   p_joint 1.442927e-02

Joint ci ratio: 5.003307e-02	ci left: 1.404422e-02	ci right 1.476726e-02	k: 6049	n:420000
Cons ci ratio: 1.687378e-01	ci left: 1.175045e-03	ci right 1.393833e-03	k: 538	n:420000
KS ci ratio: 1.761577e-02	ci left: 1.045369e-01	ci right 1.063971e-01	k: 44295	n:420000
METTL2B   420000 perm   164 sec   (2556 perm/sec)   p_kst 1.054643e-01   p_cons 1.280952e-03   p_joint 1.440238e-02

Joint ci ratio: 5.010461e-02	ci left: 1.368310e-02	ci right 1.438859e-02	k: 6034	n:430000
Cons ci ratio: 1.671945e-01	ci left: 1.169997e-03	ci right 1.385651e-03	k: 548	n:430000
KS ci ratio: 1.740001e-02	ci left: 1.046528e-01	ci right 1.064920e-01	k: 45395	n:430000
METTL2B   430000 perm   170 sec   (2527 perm/sec)   p_kst 1.055698e-01   p_cons 1.274419e-03   p_joint 1.403256e-02

Joint ci ratio: 5.106482e-02	ci left: 1.287831e-02	ci right 1.355540e-02	k: 5814	n:440000
Cons ci ratio: 1.651024e-01	ci left: 1.173901e-03	ci right 1.387299e-03	k: 562	n:440000
KS ci ratio: 1.719344e-02	ci left: 1.047477e-01	ci right 1.065666e-01	k: 46488	n:440000
METTL2B   440000 perm   176 sec   (2500 perm/sec)   p_kst 1.056545e-01   p_cons 1.277273e-03   p_joint 1.321364e-02

Joint ci ratio: 5.145476e-02	ci left: 1.240558e-02	ci right 1.306294e-02	k: 5729	n:450000
Cons ci ratio: 1.629456e-01	ci left: 1.179780e-03	ci right 1.391170e-03	k: 577	n:450000
KS ci ratio: 1.700604e-02	ci left: 1.047057e-01	ci right 1.065038e-01	k: 47521	n:450000
METTL2B   450000 perm   182 sec   (2474 perm/sec)   p_kst 1.056022e-01   p_cons 1.282222e-03   p_joint 1.273111e-02

Joint ci ratio: 4.840160e-02	ci left: 1.371830e-02	ci right 1.440089e-02	k: 6466	n:460000
Cons ci ratio: 1.610071e-01	ci left: 1.183334e-03	ci right 1.392594e-03	k: 591	n:460000
KS ci ratio: 1.682251e-02	ci left: 1.046895e-01	ci right 1.064677e-01	k: 48565	n:460000
METTL2B   460000 perm   188 sec   (2448 perm/sec)   p_kst 1.055761e-01   p_cons 1.284783e-03   p_joint 1.405652e-02

Joint ci ratio: 4.790815e-02	ci left: 1.370809e-02	ci right 1.438303e-02	k: 6600	n:470000
Cons ci ratio: 1.600646e-01	ci left: 1.172451e-03	ci right 1.378457e-03	k: 598	n:470000
KS ci ratio: 1.663261e-02	ci left: 1.048118e-01	ci right 1.065718e-01	k: 49674	n:470000
METTL2B   470000 perm   194 sec   (2423 perm/sec)   p_kst 1.056894e-01   p_cons 1.272340e-03   p_joint 1.404255e-02

Joint ci ratio: 5.034065e-02	ci left: 1.216085e-02	ci right 1.279089e-02	k: 5987	n:480000
Cons ci ratio: 1.583554e-01	ci left: 1.174029e-03	ci right 1.377900e-03	k: 611	n:480000
KS ci ratio: 1.646024e-02	ci left: 1.048004e-01	ci right 1.065418e-01	k: 50721	n:480000
METTL2B   480000 perm   200 sec   (2398 perm/sec)   p_kst 1.056688e-01   p_cons 1.272917e-03   p_joint 1.247292e-02

Joint ci ratio: 4.986047e-02	ci left: 1.214644e-02	ci right 1.276955e-02	k: 6103	n:490000
Cons ci ratio: 1.568255e-01	ci left: 1.173594e-03	ci right 1.375235e-03	k: 623	n:490000
KS ci ratio: 1.629471e-02	ci left: 1.047713e-01	ci right 1.064946e-01	k: 51759	n:490000
METTL2B   490000 perm   207 sec   (2373 perm/sec)   p_kst 1.056306e-01   p_cons 1.271429e-03   p_joint 1.245510e-02

Joint ci ratio: 5.458324e-02	ci left: 9.931225e-03	ci right 1.049047e-02	k: 5104	n:500000
Cons ci ratio: 1.548523e-01	ci left: 1.180874e-03	ci right 1.380977e-03	k: 639	n:500000
KS ci ratio: 1.612673e-02	ci left: 1.048292e-01	ci right 1.065354e-01	k: 52840	n:500000
METTL2B   500000 perm   213 sec   (2347 perm/sec)   p_kst 1.056800e-01   p_cons 1.278000e-03   p_joint 1.020800e-02

Joint ci ratio: 4.913663e-02	ci left: 1.202253e-02	ci right 1.263008e-02	k: 6285	n:510000
Cons ci ratio: 1.536569e-01	ci left: 1.176571e-03	ci right 1.374263e-03	k: 649	n:510000
KS ci ratio: 1.555728e-02	ci left: 1.098460e-01	ci right 1.115702e-01	k: 56460	n:510000
METTL2B   510000 perm   220 sec   (2323 perm/sec)   p_kst 1.107059e-01   p_cons 1.272549e-03   p_joint 1.232353e-02

Joint ci ratio: 5.052325e-02	ci left: 1.115500e-02	ci right 1.173508e-02	k: 5950	n:520000
Cons ci ratio: 1.522580e-01	ci left: 1.176138e-03	ci right 1.371794e-03	k: 661	n:520000
KS ci ratio: 1.541496e-02	ci left: 1.097526e-01	ci right 1.114594e-01	k: 57514	n:520000
METTL2B   520000 perm   226 sec   (2300 perm/sec)   p_kst 1.106038e-01   p_cons 1.271154e-03   p_joint 1.144231e-02

Joint ci ratio: 5.209628e-02	ci left: 1.029436e-02	ci right 1.084685e-02	k: 5601	n:530000
Cons ci ratio: 1.501180e-01	ci left: 1.188440e-03	ci right 1.383115e-03	k: 680	n:530000
KS ci ratio: 1.526607e-02	ci left: 1.097963e-01	ci right 1.114872e-01	k: 58639	n:530000
METTL2B   530000 perm   233 sec   (2277 perm/sec)   p_kst 1.106396e-01   p_cons 1.283019e-03   p_joint 1.056792e-02

Joint ci ratio: 5.355999e-02	ci left: 9.559067e-03	ci right 1.008695e-02	k: 5303	n:540000
Cons ci ratio: 1.485982e-01	ci left: 1.191389e-03	ci right 1.384396e-03	k: 694	n:540000
KS ci ratio: 1.512212e-02	ci left: 1.098292e-01	ci right 1.115046e-01	k: 59759	n:540000
METTL2B   540000 perm   240 sec   (2254 perm/sec)   p_kst 1.106648e-01   p_cons 1.285185e-03   p_joint 9.820370e-03

Joint ci ratio: 5.070744e-02	ci left: 1.047644e-02	ci right 1.102328e-02	k: 5911	n:550000
Cons ci ratio: 1.473319e-01	ci left: 1.190738e-03	ci right 1.381850e-03	k: 706	n:550000
KS ci ratio: 1.498273e-02	ci left: 1.098538e-01	ci right 1.115139e-01	k: 60875	n:550000
METTL2B   550000 perm   246 sec   (2232 perm/sec)   p_kst 1.106818e-01   p_cons 1.283636e-03   p_joint 1.074727e-02

Joint ci ratio: 4.528556e-02	ci left: 1.290447e-02	ci right 1.350415e-02	k: 7393	n:560000
Cons ci ratio: 1.456921e-01	ci left: 1.196999e-03	ci right 1.386792e-03	k: 722	n:560000
KS ci ratio: 1.485345e-02	ci left: 1.097939e-01	ci right 1.114387e-01	k: 61944	n:560000
METTL2B   560000 perm   253 sec   (2211 perm/sec)   p_kst 1.106143e-01   p_cons 1.289286e-03   p_joint 1.320179e-02

Joint ci ratio: 4.240570e-02	ci left: 1.445687e-02	ci right 1.508492e-02	k: 8418	n:570000
Cons ci ratio: 1.440084e-01	ci left: 1.204743e-03	ci right 1.393367e-03	k: 739	n:570000
KS ci ratio: 1.472706e-02	ci left: 1.097414e-01	ci right 1.113713e-01	k: 63016	n:570000
METTL2B   570000 perm   260 sec   (2189 perm/sec)   p_kst 1.105544e-01   p_cons 1.296491e-03   p_joint 1.476842e-02

Joint ci ratio: 4.209019e-02	ci left: 1.442426e-02	ci right 1.504612e-02	k: 8545	n:580000
Cons ci ratio: 1.431410e-01	ci left: 1.198931e-03	ci right 1.385418e-03	k: 748	n:580000
KS ci ratio: 1.460744e-02	ci left: 1.096427e-01	ci right 1.112578e-01	k: 64060	n:580000
METTL2B   580000 perm   267 sec   (2169 perm/sec)   p_kst 1.104483e-01   p_cons 1.289655e-03   p_joint 1.473276e-02

Joint ci ratio: 4.136964e-02	ci left: 1.467963e-02	ci right 1.530141e-02	k: 8843	n:590000
Cons ci ratio: 1.415433e-01	ci left: 1.206398e-03	ci right 1.391775e-03	k: 765	n:590000
KS ci ratio: 1.447444e-02	ci left: 1.097670e-01	ci right 1.113690e-01	k: 65234	n:590000
METTL2B   590000 perm   275 sec   (2149 perm/sec)   p_kst 1.105661e-01   p_cons 1.296610e-03   p_joint 1.498814e-02

Joint ci ratio: 4.137014e-02	ci left: 1.443823e-02	ci right 1.504980e-02	k: 8845	n:600000
Cons ci ratio: 1.402671e-01	ci left: 1.208802e-03	ci right 1.392734e-03	k: 779	n:600000
KS ci ratio: 1.435206e-02	ci left: 1.097908e-01	ci right 1.113796e-01	k: 66350	n:600000
METTL2B   600000 perm   282 sec   (2129 perm/sec)   p_kst 1.105833e-01   p_cons 1.298333e-03   p_joint 1.474167e-02

Joint ci ratio: 4.103990e-02	ci left: 1.443355e-02	ci right 1.503992e-02	k: 8988	n:610000
Cons ci ratio: 1.393769e-01	ci left: 1.204806e-03	ci right 1.386869e-03	k: 789	n:610000
KS ci ratio: 1.423261e-02	ci left: 1.098156e-01	ci right 1.113914e-01	k: 67467	n:610000
METTL2B   610000 perm   289 sec   (2109 perm/sec)   p_kst 1.106016e-01   p_cons 1.293443e-03   p_joint 1.473443e-02

Joint ci ratio: 4.087447e-02	ci left: 1.431887e-02	ci right 1.491794e-02	k: 9062	n:620000
Cons ci ratio: 1.385034e-01	ci left: 1.200942e-03	ci right 1.381190e-03	k: 799	n:620000
KS ci ratio: 1.411876e-02	ci left: 1.098026e-01	ci right 1.113655e-01	k: 68561	n:620000
METTL2B   620000 perm   297 sec   (2090 perm/sec)   p_kst 1.105823e-01   p_cons 1.288710e-03   p_joint 1.461613e-02

Joint ci ratio: 4.121743e-02	ci left: 1.386215e-02	ci right 1.444709e-02	k: 8916	n:630000
Cons ci ratio: 1.378165e-01	ci left: 1.194138e-03	ci right 1.372403e-03	k: 807	n:630000
KS ci ratio: 1.400172e-02	ci left: 1.098724e-01	ci right 1.114232e-01	k: 69707	n:630000
METTL2B   630000 perm   304 sec   (2072 perm/sec)   p_kst 1.106460e-01   p_cons 1.280952e-03   p_joint 1.415238e-02

Joint ci ratio: 3.983791e-02	ci left: 1.460614e-02	ci right 1.520138e-02	k: 9537	n:640000
Cons ci ratio: 1.368881e-01	ci left: 1.192077e-03	ci right 1.368737e-03	k: 818	n:640000
KS ci ratio: 1.389427e-02	ci left: 1.098450e-01	ci right 1.113835e-01	k: 70792	n:640000
METTL2B   640000 perm   312 sec   (2054 perm/sec)   p_kst 1.106125e-01   p_cons 1.278125e-03   p_joint 1.490156e-02

Joint ci ratio: 3.949724e-02	ci left: 1.463277e-02	ci right 1.522388e-02	k: 9702	n:650000
Cons ci ratio: 1.356513e-01	ci left: 1.196027e-03	ci right 1.371543e-03	k: 833	n:650000
KS ci ratio: 1.378559e-02	ci left: 1.098707e-01	ci right 1.113974e-01	k: 71911	n:650000
METTL2B   650000 perm   319 sec   (2037 perm/sec)   p_kst 1.106323e-01   p_cons 1.281538e-03   p_joint 1.492615e-02

Joint ci ratio: 3.927034e-02	ci left: 1.458058e-02	ci right 1.516612e-02	k: 9815	n:660000
Cons ci ratio: 1.342891e-01	ci left: 1.202794e-03	ci right 1.377388e-03	k: 850	n:660000
KS ci ratio: 1.367416e-02	ci left: 1.099712e-01	ci right 1.114868e-01	k: 73080	n:660000
METTL2B   660000 perm   327 sec   (2016 perm/sec)   p_kst 1.107273e-01   p_cons 1.287879e-03   p_joint 1.487121e-02

Joint ci ratio: 3.931950e-02	ci left: 1.433041e-02	ci right 1.490664e-02	k: 9793	n:670000
Cons ci ratio: 1.331978e-01	ci left: 1.205038e-03	ci right 1.378425e-03	k: 864	n:670000
KS ci ratio: 1.356590e-02	ci left: 1.100613e-01	ci right 1.115660e-01	k: 74244	n:670000
METTL2B   670000 perm   335 sec   (1997 perm/sec)   p_kst 1.108119e-01   p_cons 1.289552e-03   p_joint 1.461642e-02

Joint ci ratio: 3.981121e-02	ci left: 1.377742e-02	ci right 1.433850e-02	k: 9558	n:680000
Cons ci ratio: 1.319825e-01	ci left: 1.210066e-03	ci right 1.382463e-03	k: 880	n:680000
KS ci ratio: 1.346228e-02	ci left: 1.101179e-01	ci right 1.116119e-01	k: 75387	n:680000
METTL2B   680000 perm   343 sec   (1981 perm/sec)   p_kst 1.108632e-01   p_cons 1.294118e-03   p_joint 1.405588e-02

Joint ci ratio: 4.080042e-02	ci left: 1.293203e-02	ci right 1.347207e-02	k: 9108	n:690000
Cons ci ratio: 1.309460e-01	ci left: 1.212152e-03	ci right 1.383384e-03	k: 894	n:690000
KS ci ratio: 1.336729e-02	ci left: 1.100805e-01	ci right 1.115633e-01	k: 76466	n:690000
METTL2B   690000 perm   351 sec   (1965 perm/sec)   p_kst 1.108203e-01   p_cons 1.295652e-03   p_joint 1.320000e-02

Joint ci ratio: 4.135991e-02	ci left: 1.240788e-02	ci right 1.293331e-02	k: 8868	n:700000
Cons ci ratio: 1.298621e-01	ci left: 1.215565e-03	ci right 1.385748e-03	k: 909	n:700000
KS ci ratio: 1.327206e-02	ci left: 1.100770e-01	ci right 1.115491e-01	k: 77568	n:700000
METTL2B   700000 perm   359 sec   (1948 perm/sec)   p_kst 1.108114e-01   p_cons 1.298571e-03   p_joint 1.266857e-02

Joint ci ratio: 3.928512e-02	ci left: 1.355782e-02	ci right 1.410250e-02	k: 9818	n:710000
Cons ci ratio: 1.291547e-01	ci left: 1.212072e-03	ci right 1.380771e-03	k: 919	n:710000
KS ci ratio: 1.318176e-02	ci left: 1.100300e-01	ci right 1.114914e-01	k: 78639	n:710000
METTL2B   710000 perm   368 sec   (1932 perm/sec)   p_kst 1.107592e-01   p_cons 1.294366e-03   p_joint 1.382817e-02

Joint ci ratio: 3.999266e-02	ci left: 1.290464e-02	ci right 1.343262e-02	k: 9480	n:720000
Cons ci ratio: 1.281144e-01	ci left: 1.215401e-03	ci right 1.383097e-03	k: 934	n:720000
KS ci ratio: 1.309097e-02	ci left: 1.100191e-01	ci right 1.114702e-01	k: 79735	n:720000
METTL2B   720000 perm   376 sec   (1916 perm/sec)   p_kst 1.107431e-01   p_cons 1.297222e-03   p_joint 1.316667e-02

Joint ci ratio: 4.042396e-02	ci left: 1.246065e-02	ci right 1.297610e-02	k: 9283	n:730000
Cons ci ratio: 1.270318e-01	ci left: 1.219970e-03	ci right 1.386767e-03	k: 950	n:730000
KS ci ratio: 1.300032e-02	ci left: 1.100344e-01	ci right 1.114756e-01	k: 80850	n:730000
METTL2B   730000 perm   384 sec   (1900 perm/sec)   p_kst 1.107534e-01   p_cons 1.301370e-03   p_joint 1.271644e-02

Joint ci ratio: 4.093504e-02	ci left: 1.198991e-02	ci right 1.249230e-02	k: 9057	n:740000
Cons ci ratio: 1.263694e-01	ci left: 1.216569e-03	ci right 1.381969e-03	k: 960	n:740000
KS ci ratio: 1.291329e-02	ci left: 1.100224e-01	ci right 1.114537e-01	k: 81945	n:740000
METTL2B   740000 perm   393 sec   (1885 perm/sec)   p_kst 1.107365e-01   p_cons 1.297297e-03   p_joint 1.223919e-02

Joint ci ratio: 3.683808e-02	ci left: 1.459927e-02	ci right 1.514848e-02	k: 11154	n:750000
Cons ci ratio: 1.255878e-01	ci left: 1.215844e-03	ci right 1.380047e-03	k: 972	n:750000
KS ci ratio: 1.283216e-02	ci left: 1.099469e-01	ci right 1.113681e-01	k: 82992	n:750000
METTL2B   750000 perm   401 sec   (1870 perm/sec)   p_kst 1.106560e-01   p_cons 1.296000e-03   p_joint 1.487200e-02

Joint ci ratio: 3.758205e-02	ci left: 1.384785e-02	ci right 1.437954e-02	k: 10725	n:760000
Cons ci ratio: 1.247571e-01	ci left: 1.216416e-03	ci right 1.379529e-03	k: 985	n:760000
KS ci ratio: 1.274384e-02	ci left: 1.100072e-01	ci right 1.114194e-01	k: 84141	n:760000
METTL2B   760000 perm   410 sec   (1855 perm/sec)   p_kst 1.107118e-01   p_cons 1.296053e-03   p_joint 1.411184e-02

Joint ci ratio: 3.758732e-02	ci left: 1.366670e-02	ci right 1.419151e-02	k: 10724	n:770000
Cons ci ratio: 1.240672e-01	ci left: 1.214459e-03	ci right 1.376343e-03	k: 996	n:770000
KS ci ratio: 1.266150e-02	ci left: 1.100013e-01	ci right 1.114042e-01	k: 85240	n:770000
METTL2B   770000 perm   418 sec   (1840 perm/sec)   p_kst 1.107013e-01   p_cons 1.293506e-03   p_joint 1.392727e-02

Joint ci ratio: 3.731997e-02	ci left: 1.368708e-02	ci right 1.420885e-02	k: 10878	n:780000
Cons ci ratio: 1.229617e-01	ci left: 1.221253e-03	ci right 1.382487e-03	k: 1014	n:780000
KS ci ratio: 1.257369e-02	ci left: 1.101055e-01	ci right 1.115000e-01	k: 86425	n:780000
METTL2B   780000 perm   427 sec   (1825 perm/sec)   p_kst 1.108013e-01   p_cons 1.300000e-03   p_joint 1.394615e-02

Joint ci ratio: 3.889990e-02	ci left: 1.244420e-02	ci right 1.293913e-02	k: 10025	n:790000
Cons ci ratio: 1.222413e-01	ci left: 1.220518e-03	ci right 1.380643e-03	k: 1026	n:790000
KS ci ratio: 1.248929e-02	ci left: 1.101819e-01	ci right 1.115678e-01	k: 87590	n:790000
METTL2B   790000 perm   436 sec   (1811 perm/sec)   p_kst 1.108734e-01   p_cons 1.298734e-03   p_joint 1.268987e-02

Joint ci ratio: 3.887947e-02	ci left: 1.230349e-02	ci right 1.279255e-02	k: 10037	n:800000
Cons ci ratio: 1.215334e-01	ci left: 1.219805e-03	ci right 1.378842e-03	k: 1038	n:800000
KS ci ratio: 1.241167e-02	ci left: 1.101753e-01	ci right 1.115525e-01	k: 88690	n:800000
METTL2B   800000 perm   445 sec   (1797 perm/sec)   p_kst 1.108625e-01   p_cons 1.297500e-03   p_joint 1.254625e-02

Joint ci ratio: 3.853609e-02	ci left: 1.237045e-02	ci right 1.285774e-02	k: 10216	n:810000
Cons ci ratio: 1.207228e-01	ci left: 1.221506e-03	ci right 1.379626e-03	k: 1052	n:810000
KS ci ratio: 1.233494e-02	ci left: 1.101775e-01	ci right 1.115462e-01	k: 89797	n:810000
METTL2B   810000 perm   454 sec   (1784 perm/sec)   p_kst 1.108605e-01   p_cons 1.298765e-03   p_joint 1.261235e-02

Joint ci ratio: 3.831378e-02	ci left: 1.236332e-02	ci right 1.284745e-02	k: 10335	n:820000
Cons ci ratio: 1.200408e-01	ci left: 1.220803e-03	ci right 1.377876e-03	k: 1064	n:820000
KS ci ratio: 1.226220e-02	ci left: 1.101384e-01	ci right 1.114985e-01	k: 90870	n:820000
METTL2B   820000 perm   463 sec   (1769 perm/sec)   p_kst 1.108171e-01   p_cons 1.297561e-03   p_joint 1.260366e-02

Joint ci ratio: 3.818415e-02	ci left: 1.229908e-02	ci right 1.277903e-02	k: 10406	n:830000
Cons ci ratio: 1.193148e-01	ci left: 1.221288e-03	ci right 1.377407e-03	k: 1077	n:830000
KS ci ratio: 1.218723e-02	ci left: 1.101567e-01	ci right 1.115086e-01	k: 91990	n:830000
METTL2B   830000 perm   473 sec   (1756 perm/sec)   p_kst 1.108313e-01   p_cons 1.297590e-03   p_joint 1.253735e-02

Joint ci ratio: 3.793865e-02	ci left: 1.231185e-02	ci right 1.278914e-02	k: 10541	n:840000
Cons ci ratio: 1.188748e-01	ci left: 1.215989e-03	ci right 1.370817e-03	k: 1085	n:840000
KS ci ratio: 1.211398e-02	ci left: 1.101687e-01	ci right 1.115126e-01	k: 93105	n:840000
METTL2B   840000 perm   482 sec   (1743 perm/sec)   p_kst 1.108393e-01   p_cons 1.291667e-03   p_joint 1.254881e-02

Joint ci ratio: 3.578290e-02	ci left: 1.367317e-02	ci right 1.417250e-02	k: 11833	n:850000
Cons ci ratio: 1.180622e-01	ci left: 1.218807e-03	ci right 1.372859e-03	k: 1100	n:850000
KS ci ratio: 1.205290e-02	ci left: 1.100032e-01	ci right 1.113383e-01	k: 94069	n:850000
METTL2B   850000 perm   491 sec   (1730 perm/sec)   p_kst 1.106694e-01   p_cons 1.294118e-03   p_joint 1.392118e-02

Joint ci ratio: 3.414783e-02	ci left: 1.483409e-02	ci right 1.535058e-02	k: 12978	n:860000
Cons ci ratio: 1.178489e-01	ci left: 1.209149e-03	ci right 1.361684e-03	k: 1104	n:860000
KS ci ratio: 1.198416e-02	ci left: 1.099819e-01	ci right 1.113091e-01	k: 95154	n:860000
METTL2B   860000 perm   501 sec   (1716 perm/sec)   p_kst 1.106442e-01   p_cons 1.283721e-03   p_joint 1.509070e-02

Joint ci ratio: 3.407363e-02	ci left: 1.472967e-02	ci right 1.524139e-02	k: 13036	n:870000
Cons ci ratio: 1.167442e-01	ci left: 1.218680e-03	ci right 1.370878e-03	k: 1125	n:870000
KS ci ratio: 1.191463e-02	ci left: 1.099933e-01	ci right 1.113128e-01	k: 96267	n:870000
METTL2B   870000 perm   511 sec   (1704 perm/sec)   p_kst 1.106517e-01   p_cons 1.293103e-03   p_joint 1.498391e-02

Joint ci ratio: 3.390147e-02	ci left: 1.471213e-02	ci right 1.522061e-02	k: 13169	n:880000
Cons ci ratio: 1.162807e-01	ci left: 1.214761e-03	ci right 1.365825e-03	k: 1134	n:880000
KS ci ratio: 1.184568e-02	ci left: 1.100146e-01	ci right 1.113266e-01	k: 97389	n:880000
METTL2B   880000 perm   520 sec   (1691 perm/sec)   p_kst 1.106693e-01   p_cons 1.288636e-03   p_joint 1.496477e-02

Joint ci ratio: 3.350002e-02	ci left: 1.489780e-02	ci right 1.540648e-02	k: 13484	n:890000
Cons ci ratio: 1.156204e-01	ci left: 1.215295e-03	ci right 1.365509e-03	k: 1147	n:890000
KS ci ratio: 1.177852e-02	ci left: 1.100253e-01	ci right 1.113300e-01	k: 98502	n:890000
METTL2B   890000 perm   531 sec   (1677 perm/sec)   p_kst 1.106764e-01   p_cons 1.288764e-03   p_joint 1.515056e-02

Joint ci ratio: 3.342872e-02	ci left: 1.479726e-02	ci right 1.530142e-02	k: 13543	n:900000
Cons ci ratio: 1.151701e-01	ci left: 1.211503e-03	ci right 1.360625e-03	k: 1156	n:900000
KS ci ratio: 1.171130e-02	ci left: 1.100558e-01	ci right 1.113534e-01	k: 99633	n:900000
METTL2B   900000 perm   541 sec   (1665 perm/sec)   p_kst 1.107033e-01   p_cons 1.284444e-03   p_joint 1.504778e-02

Joint ci ratio: 3.323651e-02	ci left: 1.480575e-02	ci right 1.530724e-02	k: 13700	n:910000
Cons ci ratio: 1.143330e-01	ci left: 1.216335e-03	ci right 1.364891e-03	k: 1173	n:910000
KS ci ratio: 1.164710e-02	ci left: 1.100538e-01	ci right 1.113442e-01	k: 100735	n:910000
METTL2B   910000 perm   550 sec   (1654 perm/sec)   p_kst 1.106978e-01   p_cons 1.289011e-03   p_joint 1.505495e-02

Joint ci ratio: 3.304759e-02	ci left: 1.481406e-02	ci right 1.531292e-02	k: 13857	n:920000
Cons ci ratio: 1.136094e-01	ci left: 1.218954e-03	ci right 1.366824e-03	k: 1188	n:920000
KS ci ratio: 1.158306e-02	ci left: 1.100671e-01	ci right 1.113505e-01	k: 101851	n:920000
METTL2B   920000 perm   560 sec   (1642 perm/sec)   p_kst 1.107076e-01   p_cons 1.291304e-03   p_joint 1.506196e-02

Joint ci ratio: 3.285947e-02	ci left: 1.482432e-02	ci right 1.532064e-02	k: 14016	n:930000
Cons ci ratio: 1.131348e-01	ci left: 1.216294e-03	ci right 1.363184e-03	k: 1198	n:930000
KS ci ratio: 1.152150e-02	ci left: 1.100555e-01	ci right 1.113319e-01	k: 102944	n:930000
METTL2B   930000 perm   570 sec   (1631 perm/sec)   p_kst 1.106925e-01   p_cons 1.288172e-03   p_joint 1.507097e-02

Joint ci ratio: 3.230289e-02	ci left: 1.517525e-02	ci right 1.567455e-02	k: 14498	n:940000
Cons ci ratio: 1.122485e-01	ci left: 1.222998e-03	ci right 1.369464e-03	k: 1217	n:940000
KS ci ratio: 1.145949e-02	ci left: 1.100685e-01	ci right 1.113381e-01	k: 104060	n:940000
METTL2B   940000 perm   580 sec   (1619 perm/sec)   p_kst 1.107021e-01   p_cons 1.294681e-03   p_joint 1.542340e-02

Joint ci ratio: 3.225814e-02	ci left: 1.505935e-02	ci right 1.555414e-02	k: 14540	n:950000
Cons ci ratio: 1.116542e-01	ci left: 1.223426e-03	ci right 1.369116e-03	k: 1230	n:950000
KS ci ratio: 1.140109e-02	ci left: 1.100361e-01	ci right 1.112989e-01	k: 105133	n:950000
METTL2B   950000 perm   591 sec   (1608 perm/sec)   p_kst 1.106663e-01   p_cons 1.294737e-03   p_joint 1.530526e-02

Joint ci ratio: 3.209197e-02	ci left: 1.505851e-02	ci right 1.555067e-02	k: 14691	n:960000
Cons ci ratio: 1.110693e-01	ci left: 1.223846e-03	ci right 1.368773e-03	k: 1243	n:960000
KS ci ratio: 1.134208e-02	ci left: 1.100304e-01	ci right 1.112865e-01	k: 106231	n:960000
METTL2B   960000 perm   601 sec   (1597 perm/sec)   p_kst 1.106573e-01   p_cons 1.294792e-03   p_joint 1.530313e-02

Joint ci ratio: 3.191198e-02	ci left: 1.507303e-02	ci right 1.556286e-02	k: 14857	n:970000
Cons ci ratio: 1.106257e-01	ci left: 1.221252e-03	ci right 1.365257e-03	k: 1253	n:970000
KS ci ratio: 1.128409e-02	ci left: 1.100228e-01	ci right 1.112723e-01	k: 107327	n:970000
METTL2B   970000 perm   613 sec   (1583 perm/sec)   p_kst 1.106464e-01   p_cons 1.291753e-03   p_joint 1.531649e-02

Joint ci ratio: 3.251986e-02	ci left: 1.437256e-02	ci right 1.484868e-02	k: 14317	n:980000
Cons ci ratio: 1.098399e-01	ci left: 1.226652e-03	ci right 1.370199e-03	k: 1271	n:980000
KS ci ratio: 1.122616e-02	ci left: 1.100296e-01	ci right 1.112727e-01	k: 108437	n:980000
METTL2B   980000 perm   623 sec   (1572 perm/sec)   p_kst 1.106500e-01   p_cons 1.296939e-03   p_joint 1.460918e-02

Joint ci ratio: 3.265329e-02	ci left: 1.411414e-02	ci right 1.458366e-02	k: 14204	n:990000
Cons ci ratio: 1.094109e-01	ci left: 1.224085e-03	ci right 1.366737e-03	k: 1281	n:990000
KS ci ratio: 1.116826e-02	ci left: 1.100513e-01	ci right 1.112883e-01	k: 109562	n:990000
METTL2B   990000 perm   635 sec   (1559 perm/sec)   p_kst 1.106687e-01   p_cons 1.293939e-03   p_joint 1.434747e-02

Joint ci ratio: 3.249132e-02	ci left: 1.411384e-02	ci right 1.458098e-02	k: 14346	n:1000000
Cons ci ratio: 1.089446e-01	ci left: 1.222544e-03	ci right 1.364370e-03	k: 1292	n:1000000
KS ci ratio: 1.110713e-02	ci left: 1.101455e-01	ci right 1.113767e-01	k: 110760	n:1000000
METTL2B   1000000 perm   646 sec   (1547 perm/sec)   p_kst 1.107600e-01   p_cons 1.292000e-03   p_joint 1.434600e-02

Joint ci ratio: 3.230008e-02	ci left: 1.414106e-02	ci right 1.460629e-02	k: 14516	n:1010000
Cons ci ratio: 1.082766e-01	ci left: 1.225851e-03	ci right 1.367133e-03	k: 1308	n:1010000
KS ci ratio: 1.104699e-02	ci left: 1.102379e-01	ci right 1.114634e-01	k: 111958	n:1010000
METTL2B   1010000 perm   657 sec   (1537 perm/sec)   p_kst 1.108495e-01   p_cons 1.295050e-03   p_joint 1.437228e-02

Joint ci ratio: 3.245239e-02	ci left: 1.387403e-02	ci right 1.433266e-02	k: 14384	n:1020000
Cons ci ratio: 1.077429e-01	ci left: 1.226234e-03	ci right 1.366819e-03	k: 1321	n:1020000
KS ci ratio: 1.099284e-02	ci left: 1.102384e-01	ci right 1.114579e-01	k: 113064	n:1020000
METTL2B   1020000 perm   668 sec   (1527 perm/sec)   p_kst 1.108471e-01   p_cons 1.295098e-03   p_joint 1.410196e-02

Joint ci ratio: 3.227535e-02	ci left: 1.389149e-02	ci right 1.434815e-02	k: 14542	n:1030000
Cons ci ratio: 1.072975e-01	ci left: 1.224721e-03	ci right 1.364516e-03	k: 1332	n:1030000
KS ci ratio: 1.093889e-02	ci left: 1.102496e-01	ci right 1.114632e-01	k: 114181	n:1030000
METTL2B   1030000 perm   680 sec   (1515 perm/sec)   p_kst 1.108553e-01   p_cons 1.293204e-03   p_joint 1.411845e-02

Joint ci ratio: 3.109222e-02	ci left: 1.481974e-02	ci right 1.528874e-02	k: 15655	n:1040000
Cons ci ratio: 1.066591e-01	ci left: 1.227918e-03	ci right 1.367191e-03	k: 1348	n:1040000
KS ci ratio: 1.088859e-02	ci left: 1.102089e-01	ci right 1.114164e-01	k: 115244	n:1040000
METTL2B   1040000 perm   691 sec   (1506 perm/sec)   p_kst 1.108115e-01   p_cons 1.296154e-03   p_joint 1.505288e-02

Joint ci ratio: 3.169905e-02	ci left: 1.412764e-02	ci right 1.458362e-02	k: 15072	n:1050000
Cons ci ratio: 1.061099e-01	ci left: 1.229202e-03	ci right 1.367858e-03	k: 1362	n:1050000
KS ci ratio: 1.083531e-02	ci left: 1.102354e-01	ci right 1.114372e-01	k: 116377	n:1050000
METTL2B   1050000 perm   702 sec   (1496 perm/sec)   p_kst 1.108352e-01   p_cons 1.297143e-03   p_joint 1.435429e-02

Joint ci ratio: 3.049152e-02	ci left: 1.511869e-02	ci right 1.558774e-02	k: 16273	n:1060000
Cons ci ratio: 1.056844e-01	ci left: 1.227708e-03	ci right 1.365606e-03	k: 1373	n:1060000
KS ci ratio: 1.078565e-02	ci left: 1.102096e-01	ci right 1.114057e-01	k: 117455	n:1060000
METTL2B   1060000 perm   713 sec   (1487 perm/sec)   p_kst 1.108066e-01   p_cons 1.295283e-03   p_joint 1.535189e-02

Joint ci ratio: 3.034075e-02	ci left: 1.512764e-02	ci right 1.559461e-02	k: 16435	n:1070000
Cons ci ratio: 1.052259e-01	ci left: 1.227153e-03	ci right 1.364354e-03	k: 1385	n:1070000
KS ci ratio: 1.073254e-02	ci left: 1.102599e-01	ci right 1.114506e-01	k: 118614	n:1070000
METTL2B   1070000 perm   725 sec   (1476 perm/sec)   p_kst 1.108542e-01   p_cons 1.294393e-03   p_joint 1.535981e-02

Joint ci ratio: 3.156769e-02	ci left: 1.385459e-02	ci right 1.429987e-02	k: 15202	n:1080000
Cons ci ratio: 1.046984e-01	ci left: 1.228414e-03	ci right 1.365024e-03	k: 1399	n:1080000
KS ci ratio: 1.069678e-02	ci left: 1.100045e-01	ci right 1.111884e-01	k: 119443	n:1080000
METTL2B   1080000 perm   737 sec   (1465 perm/sec)   p_kst 1.105954e-01   p_cons 1.295370e-03   p_joint 1.407593e-02

Joint ci ratio: 3.218617e-02	ci left: 1.320956e-02	ci right 1.364258e-02	k: 14633	n:1090000
Cons ci ratio: 1.042896e-01	ci left: 1.226972e-03	ci right 1.362857e-03	k: 1410	n:1090000
KS ci ratio: 1.064770e-02	ci left: 1.100054e-01	ci right 1.111838e-01	k: 120547	n:1090000
METTL2B   1090000 perm   749 sec   (1456 perm/sec)   p_kst 1.105936e-01   p_cons 1.293578e-03   p_joint 1.342477e-02

Joint ci ratio: 3.207064e-02	ci left: 1.318506e-02	ci right 1.361569e-02	k: 14739	n:1100000
Cons ci ratio: 1.038490e-01	ci left: 1.226442e-03	ci right 1.361660e-03	k: 1422	n:1100000
KS ci ratio: 1.060100e-02	ci left: 1.099746e-01	ci right 1.111475e-01	k: 121616	n:1100000
METTL2B   1100000 perm   760 sec   (1447 perm/sec)   p_kst 1.105600e-01   p_cons 1.292727e-03   p_joint 1.339909e-02

Joint ci ratio: 3.192477e-02	ci left: 1.318692e-02	ci right 1.361562e-02	k: 14874	n:1110000
Cons ci ratio: 1.033059e-01	ci left: 1.228557e-03	ci right 1.363256e-03	k: 1437	n:1110000
KS ci ratio: 1.055293e-02	ci left: 1.099812e-01	ci right 1.111488e-01	k: 122726	n:1110000
METTL2B   1110000 perm   772 sec   (1438 perm/sec)   p_kst 1.105640e-01   p_cons 1.294595e-03   p_joint 1.340000e-02

Joint ci ratio: 3.189629e-02	ci left: 1.309397e-02	ci right 1.351927e-02	k: 14902	n:1120000
Cons ci ratio: 1.029487e-01	ci left: 1.226286e-03	ci right 1.360243e-03	k: 1447	n:1120000
KS ci ratio: 1.050765e-02	ci left: 1.099476e-01	ci right 1.111098e-01	k: 123791	n:1120000
METTL2B   1120000 perm   784 sec   (1428 perm/sec)   p_kst 1.105277e-01   p_cons 1.291964e-03   p_joint 1.330536e-02

Joint ci ratio: 3.251163e-02	ci left: 1.249523e-02	ci right 1.290905e-02	k: 14352	n:1130000
Cons ci ratio: 1.024896e-01	ci left: 1.226643e-03	ci right 1.360005e-03	k: 1460	n:1130000
KS ci ratio: 1.046111e-02	ci left: 1.099490e-01	ci right 1.111061e-01	k: 124895	n:1130000
METTL2B   1130000 perm   796 sec   (1419 perm/sec)   p_kst 1.105265e-01   p_cons 1.292035e-03   p_joint 1.270088e-02

Joint ci ratio: 3.235969e-02	ci left: 1.250308e-02	ci right 1.291519e-02	k: 14487	n:1140000
Cons ci ratio: 1.020713e-01	ci left: 1.226140e-03	ci right 1.358871e-03	k: 1472	n:1140000
KS ci ratio: 1.041435e-02	ci left: 1.099662e-01	ci right 1.111183e-01	k: 126017	n:1140000
METTL2B   1140000 perm   808 sec   (1411 perm/sec)   p_kst 1.105412e-01   p_cons 1.291228e-03   p_joint 1.270789e-02

Joint ci ratio: 3.075545e-02	ci left: 1.371529e-02	ci right 1.414455e-02	k: 16018	n:1150000
Cons ci ratio: 1.015213e-01	ci left: 1.229037e-03	ci right 1.361322e-03	k: 1488	n:1150000
KS ci ratio: 1.037143e-02	ci left: 1.099223e-01	ci right 1.110692e-01	k: 127069	n:1150000
METTL2B   1150000 perm   820 sec   (1403 perm/sec)   p_kst 1.104948e-01   p_cons 1.293913e-03   p_joint 1.392870e-02

Joint ci ratio: 2.972347e-02	ci left: 1.455280e-02	ci right 1.499273e-02	k: 17135	n:1160000
Cons ci ratio: 1.012838e-01	ci left: 1.224323e-03	ci right 1.355774e-03	k: 1495	n:1160000
KS ci ratio: 1.032363e-02	ci left: 1.099816e-01	ci right 1.111238e-01	k: 128240	n:1160000
METTL2B   1160000 perm   833 sec   (1393 perm/sec)   p_kst 1.105517e-01   p_cons 1.288793e-03   p_joint 1.477155e-02

Joint ci ratio: 2.960810e-02	ci left: 1.454210e-02	ci right 1.497997e-02	k: 17269	n:1170000
Cons ci ratio: 1.008131e-01	ci left: 1.225522e-03	ci right 1.356454e-03	k: 1509	n:1170000
KS ci ratio: 1.028244e-02	ci left: 1.099265e-01	ci right 1.110635e-01	k: 129278	n:1170000
METTL2B   1170000 perm   846 sec   (1383 perm/sec)   p_kst 1.104940e-01   p_cons 1.289744e-03   p_joint 1.475983e-02

Joint ci ratio: 2.958392e-02	ci left: 1.444408e-02	ci right 1.487864e-02	k: 17299	n:1180000
Cons ci ratio: 1.003819e-01	ci left: 1.225876e-03	ci right 1.356253e-03	k: 1522	n:1180000
KS ci ratio: 1.023780e-02	ci left: 1.099475e-01	ci right 1.110798e-01	k: 130405	n:1180000
METTL2B   1180000 perm   858 sec   (1375 perm/sec)   p_kst 1.105127e-01   p_cons 1.289831e-03   p_joint 1.466017e-02

Joint ci ratio: 3.047763e-02	ci left: 1.350192e-02	ci right 1.392062e-02	k: 16315	n:1190000
Cons ci ratio: 9.992365e-02	ci left: 1.227044e-03	ci right 1.356915e-03	k: 1536	n:1190000
KS ci ratio: 1.019200e-02	ci left: 1.100018e-01	ci right 1.111295e-01	k: 131572	n:1190000
METTL2B   1190000 perm   870 sec   (1367 perm/sec)   p_kst 1.105647e-01   p_cons 1.290756e-03   p_joint 1.371008e-02

Outputting figure to mutsig2_images.part000000000104/METTL2B.5_1173_1190000_0.11056_0.0012908_0.01371.png
                gene_name: METTL2B
               theta_stop: 0.100 
                    nperm: 1190000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0013 
      ci_cons_bounds_left: 0.0012 
     ci_cons_bounds_right: 0.0014 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.014 

Current progress: 27 percent done.
MEX3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
Cons ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
KS ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
MEX3B   10000 perm   2 sec   (5419 perm/sec)   p_kst 1.344000e-01   p_cons 5.804000e-01   p_joint 2.177000e-01

Outputting figure to mutsig2_images.part000000000104/MEX3B.5_1718_10000_0.1344_0.5804_0.2177.png
                gene_name: MEX3B
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
MFAP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
Cons ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
KS ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
MFAP3L   10000 perm   2 sec   (5317 perm/sec)   p_kst 4.230000e-02   p_cons 2.732000e-01   p_joint 6.370000e-02

Joint ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
Cons ci ratio: 4.504561e-02	ci left: 2.684227e-01	ci right 2.808429e-01	k: 5492	n:20000
KS ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
MFAP3L   20000 perm   4 sec   (4756 perm/sec)   p_kst 4.020000e-02   p_cons 2.746000e-01   p_joint 9.010000e-02

Joint ci ratio: 7.285774e-02	ci left: 8.478483e-02	ci right 9.122855e-02	k: 2639	n:30000
Cons ci ratio: 3.695429e-02	ci left: 2.676992e-01	ci right 2.778115e-01	k: 8182	n:30000
KS ci ratio: 1.102520e-01	ci left: 3.819990e-02	ci right 4.268966e-02	k: 1212	n:30000
MFAP3L   30000 perm   7 sec   (4541 perm/sec)   p_kst 4.040000e-02   p_cons 2.727333e-01   p_joint 8.796667e-02

Joint ci ratio: 6.640977e-02	ci left: 7.745791e-02	ci right 8.280323e-02	k: 3204	n:40000
Cons ci ratio: 3.198861e-02	ci left: 2.685637e-01	ci right 2.773193e-01	k: 10917	n:40000
KS ci ratio: 9.608147e-02	ci left: 3.802732e-02	ci right 4.188983e-02	k: 1597	n:40000
MFAP3L   40000 perm   9 sec   (4415 perm/sec)   p_kst 3.992500e-02   p_cons 2.729250e-01   p_joint 8.010000e-02

Outputting figure to mutsig2_images.part000000000104/MFAP3L.5_1238_40000_0.039925_0.27292_0.0801.png
                gene_name: MFAP3L
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 31 percent done.
MED15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
Cons ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
KS ci ratio: 7.541582e-02	ci left: 2.046155e-01	ci right 2.207523e-01	k: 2126	n:10000
MED15   10000 perm   2 sec   (5103 perm/sec)   p_kst 2.126000e-01   p_cons 8.301000e-01   p_joint 3.651000e-01

Outputting figure to mutsig2_images.part000000000104/MED15.4_2439_10000_0.2126_0.8301_0.3651.png
                gene_name: MED15
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 33 percent done.
MED17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
Cons ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
KS ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
MED17   10000 perm   2 sec   (5276 perm/sec)   p_kst 2.665000e-01   p_cons 2.193000e-01   p_joint 2.321000e-01

Outputting figure to mutsig2_images.part000000000104/MED17.4_2004_10000_0.2665_0.2193_0.2321.png
                gene_name: MED17
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 35 percent done.
MED23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
MED23   10000 perm   2 sec   (4229 perm/sec)   p_kst 7.035000e-01   p_cons 5.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED23.4_4252_10000_0.7035_0.5291_1.png
                gene_name: MED23
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
MEI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 8.819135e-03	ci left: 9.475226e-01	ci right 9.560117e-01	k: 9519	n:10000
MEI1   10000 perm   2 sec   (4436 perm/sec)   p_kst 9.519000e-01   p_cons 3.899000e-01   p_joint 7.385000e-01

Outputting figure to mutsig2_images.part000000000104/MEI1.4_3949_10000_0.9519_0.3899_0.7385.png
                gene_name: MEI1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 39 percent done.
MEIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
Cons ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
KS ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
MEIS1   10000 perm   2 sec   (5741 perm/sec)   p_kst 3.836000e-01   p_cons 1.146000e-01   p_joint 4.959000e-01

Joint ci ratio: 2.554022e-02	ci left: 5.338631e-01	ci right 5.477251e-01	k: 10816	n:20000
Cons ci ratio: 7.694953e-02	ci left: 1.104132e-01	ci right 1.192991e-01	k: 2296	n:20000
KS ci ratio: 3.513337e-02	ci left: 3.768532e-01	ci right 3.903807e-01	k: 7672	n:20000
MEIS1   20000 perm   4 sec   (5029 perm/sec)   p_kst 3.836000e-01   p_cons 1.148000e-01   p_joint 5.408000e-01

Outputting figure to mutsig2_images.part000000000104/MEIS1.4_1221_20000_0.3836_0.1148_0.5408.png
                gene_name: MEIS1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 41 percent done.
MEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
MEN1   10000 perm   2 sec   (5140 perm/sec)   p_kst 6.936000e-01   p_cons 5.680000e-02   p_joint 3.724000e-01

Joint ci ratio: 5.022733e-02	ci left: 2.275518e-01	ci right 2.393258e-01	k: 4668	n:20000
Cons ci ratio: 1.138568e-01	ci left: 5.275592e-02	ci right 5.917394e-02	k: 1118	n:20000
KS ci ratio: 1.834884e-02	ci left: 6.888679e-01	ci right 7.016753e-01	k: 13906	n:20000
MEN1   20000 perm   4 sec   (4628 perm/sec)   p_kst 6.953000e-01   p_cons 5.590000e-02   p_joint 2.334000e-01

Joint ci ratio: 3.670442e-02	ci left: 2.703834e-01	ci right 2.805267e-01	k: 8263	n:30000
Cons ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
KS ci ratio: 1.510341e-02	ci left: 6.866068e-01	ci right 6.970893e-01	k: 20756	n:30000
MEN1   30000 perm   7 sec   (4425 perm/sec)   p_kst 6.918667e-01   p_cons 5.550000e-02   p_joint 2.754333e-01

Outputting figure to mutsig2_images.part000000000104/MEN1.4_1884_30000_0.69187_0.0555_0.27543.png
                gene_name: MEN1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 43 percent done.
MEOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
MEOX2   10000 perm   2 sec   (6384 perm/sec)   p_kst 4.606000e-01   p_cons 9.536000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEOX2.4_927_10000_0.4606_0.9536_1.png
                gene_name: MEOX2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
MEST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
MEST   10000 perm   2 sec   (5507 perm/sec)   p_kst 1.879000e-01   p_cons 3.970000e-02   p_joint 7.960000e-02

Joint ci ratio: 1.054301e-01	ci left: 6.123167e-02	ci right 6.809556e-02	k: 1292	n:20000
Cons ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
KS ci ratio: 5.768113e-02	ci left: 1.821608e-01	ci right 1.930302e-01	k: 3751	n:20000
MEST   20000 perm   4 sec   (4969 perm/sec)   p_kst 1.875500e-01   p_cons 3.765000e-02   p_joint 6.460000e-02

Joint ci ratio: 9.076532e-02	ci left: 5.587051e-02	ci right 6.121539e-02	k: 1755	n:30000
Cons ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
KS ci ratio: 4.696830e-02	ci left: 1.839888e-01	ci right 1.928716e-01	k: 5652	n:30000
MEST   30000 perm   6 sec   (4733 perm/sec)   p_kst 1.884000e-01   p_cons 4.203333e-02   p_joint 5.850000e-02

Joint ci ratio: 6.725750e-02	ci left: 7.563630e-02	ci right 8.092512e-02	k: 3130	n:40000
Cons ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
KS ci ratio: 4.057746e-02	ci left: 1.853223e-01	ci right 1.930229e-01	k: 7566	n:40000
MEST   40000 perm   9 sec   (4581 perm/sec)   p_kst 1.891500e-01   p_cons 4.185000e-02   p_joint 7.825000e-02

Outputting figure to mutsig2_images.part000000000104/MEST.4_1056_40000_0.18915_0.04185_0.07825.png
                gene_name: MEST
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 47 percent done.
METTL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
METTL14   10000 perm   2 sec   (5613 perm/sec)   p_kst 7.530000e-02   p_cons 2.130000e-02   p_joint 8.570000e-02

Joint ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
Cons ci ratio: 1.923153e-01	ci left: 1.839051e-02	ci right 2.235066e-02	k: 406	n:20000
KS ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
METTL14   20000 perm   4 sec   (5003 perm/sec)   p_kst 7.675000e-02   p_cons 2.030000e-02   p_joint 8.015000e-02

Joint ci ratio: 8.116973e-02	ci left: 6.919799e-02	ci right 7.508520e-02	k: 2163	n:30000
Cons ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
KS ci ratio: 7.917639e-02	ci left: 7.253493e-02	ci right 7.854757e-02	k: 2265	n:30000
METTL14   30000 perm   6 sec   (4762 perm/sec)   p_kst 7.550000e-02   p_cons 1.866667e-02   p_joint 7.210000e-02

Joint ci ratio: 6.737430e-02	ci left: 7.539017e-02	ci right 8.067128e-02	k: 3120	n:40000
Cons ci ratio: 1.448697e-01	ci left: 1.667146e-02	ci right 1.929918e-02	k: 718	n:40000
KS ci ratio: 6.830444e-02	ci left: 7.347062e-02	ci right 7.869112e-02	k: 3042	n:40000
METTL14   40000 perm   9 sec   (4595 perm/sec)   p_kst 7.605000e-02   p_cons 1.795000e-02   p_joint 7.800000e-02

Joint ci ratio: 5.918429e-02	ci left: 7.826779e-02	ci right 8.306103e-02	k: 4032	n:50000
Cons ci ratio: 1.298519e-01	ci left: 1.673653e-02	ci right 1.907992e-02	k: 894	n:50000
KS ci ratio: 6.097860e-02	ci left: 7.400739e-02	ci right 7.868193e-02	k: 3816	n:50000
METTL14   50000 perm   11 sec   (4465 perm/sec)   p_kst 7.632000e-02   p_cons 1.788000e-02   p_joint 8.064000e-02

Joint ci ratio: 5.027552e-02	ci left: 8.968231e-02	ci right 9.432390e-02	k: 5519	n:60000
Cons ci ratio: 1.167253e-01	ci left: 1.737204e-02	ci right 1.954156e-02	k: 1106	n:60000
KS ci ratio: 5.577384e-02	ci left: 7.394118e-02	ci right 7.819993e-02	k: 4563	n:60000
METTL14   60000 perm   14 sec   (4361 perm/sec)   p_kst 7.605000e-02   p_cons 1.843333e-02   p_joint 9.198333e-02

Joint ci ratio: 4.568782e-02	ci left: 9.297894e-02	ci right 9.734040e-02	k: 6660	n:70000
Cons ci ratio: 1.083019e-01	ci left: 1.737556e-02	ci right 1.937893e-02	k: 1285	n:70000
KS ci ratio: 5.154584e-02	ci left: 7.434380e-02	ci right 7.829141e-02	k: 5341	n:70000
METTL14   70000 perm   16 sec   (4252 perm/sec)   p_kst 7.630000e-02   p_cons 1.835714e-02   p_joint 9.514286e-02

Joint ci ratio: 5.397072e-02	ci left: 6.019046e-02	ci right 6.354140e-02	k: 4948	n:80000
Cons ci ratio: 1.015438e-01	ci left: 1.735808e-02	ci right 1.922708e-02	k: 1462	n:80000
KS ci ratio: 4.822592e-02	ci left: 7.444478e-02	ci right 7.813601e-02	k: 6102	n:80000
METTL14   80000 perm   19 sec   (4167 perm/sec)   p_kst 7.627500e-02   p_cons 1.827500e-02   p_joint 6.185000e-02

Joint ci ratio: 4.311790e-02	ci left: 8.229466e-02	ci right 8.593220e-02	k: 7569	n:90000
Cons ci ratio: 9.561451e-02	ci left: 1.745602e-02	ci right 1.921966e-02	k: 1649	n:90000
KS ci ratio: 4.555006e-02	ci left: 7.429883e-02	ci right 7.777300e-02	k: 6842	n:90000
METTL14   90000 perm   22 sec   (4081 perm/sec)   p_kst 7.602222e-02   p_cons 1.832222e-02   p_joint 8.410000e-02

Outputting figure to mutsig2_images.part000000000104/METTL14.4_1415_90000_0.076022_0.018322_0.0841.png
                gene_name: METTL14
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.086 

Current progress: 49 percent done.
MEX3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
MEX3C   10000 perm   2 sec   (5261 perm/sec)   p_kst 1.559000e-01   p_cons 8.010000e-02   p_joint 3.297000e-01

Joint ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
Cons ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
KS ci ratio: 6.274169e-02	ci left: 1.581520e-01	ci right 1.684461e-01	k: 3265	n:20000
MEX3C   20000 perm   4 sec   (4757 perm/sec)   p_kst 1.632500e-01   p_cons 7.610000e-02   p_joint 1.234500e-01

Outputting figure to mutsig2_images.part000000000104/MEX3C.4_1988_20000_0.16325_0.0761_0.12345.png
                gene_name: MEX3C
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
MED16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
MED16   10000 perm   2 sec   (5291 perm/sec)   p_kst 6.526000e-01   p_cons 3.990000e-02   p_joint 2.990000e-01

Joint ci ratio: 4.866496e-02	ci left: 2.389526e-01	ci right 2.509216e-01	k: 4898	n:20000
Cons ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
KS ci ratio: 2.017392e-02	ci left: 6.470590e-01	ci right 6.602963e-01	k: 13074	n:20000
MED16   20000 perm   4 sec   (4739 perm/sec)   p_kst 6.537000e-01   p_cons 3.725000e-02   p_joint 2.449000e-01

Joint ci ratio: 3.429594e-02	ci left: 2.981340e-01	ci right 3.085707e-01	k: 9100	n:30000
Cons ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
KS ci ratio: 1.659725e-02	ci left: 6.448393e-01	ci right 6.556649e-01	k: 19508	n:30000
MED16   30000 perm   7 sec   (4527 perm/sec)   p_kst 6.502667e-01   p_cons 3.816667e-02   p_joint 3.033333e-01

Joint ci ratio: 3.229975e-02	ci left: 2.647582e-01	ci right 2.734753e-01	k: 10764	n:40000
Cons ci ratio: 1.022737e-01	ci left: 3.361040e-02	ci right 3.725745e-02	k: 1416	n:40000
KS ci ratio: 1.435926e-02	ci left: 6.460297e-01	ci right 6.553984e-01	k: 26029	n:40000
MED16   40000 perm   9 sec   (4365 perm/sec)   p_kst 6.507250e-01   p_cons 3.540000e-02   p_joint 2.691000e-01

Joint ci ratio: 3.623871e-02	ci left: 1.861921e-01	ci right 1.930840e-01	k: 9481	n:50000
Cons ci ratio: 8.839855e-02	ci left: 3.616482e-02	ci right 3.952911e-02	k: 1891	n:50000
KS ci ratio: 1.286216e-02	ci left: 6.458608e-01	ci right 6.542418e-01	k: 32503	n:50000
MED16   50000 perm   12 sec   (4247 perm/sec)   p_kst 6.500600e-01   p_cons 3.782000e-02   p_joint 1.896200e-01

Outputting figure to mutsig2_images.part000000000104/MED16.3_2694_50000_0.65006_0.03782_0.18962.png
                gene_name: MED16
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 53 percent done.
MEGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
Cons ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
KS ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
MEGF6   10000 perm   2 sec   (4245 perm/sec)   p_kst 1.360000e-02   p_cons 7.017000e-01   p_joint 1.192000e-01

Joint ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
Cons ci ratio: 1.823850e-02	ci left: 6.914326e-01	ci right 7.042098e-01	k: 13957	n:20000
KS ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
MEGF6   20000 perm   5 sec   (3921 perm/sec)   p_kst 1.325000e-02   p_cons 6.978500e-01   p_joint 5.270000e-02

Joint ci ratio: 1.149234e-01	ci left: 3.518393e-02	ci right 3.950626e-02	k: 1119	n:30000
Cons ci ratio: 1.447570e-02	ci left: 7.044934e-01	ci right 7.147993e-01	k: 21290	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
MEGF6   30000 perm   8 sec   (3786 perm/sec)   p_kst 1.370000e-02   p_cons 7.096667e-01   p_joint 3.730000e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.249735e-02	ci left: 7.064798e-01	ci right 7.153895e-01	k: 28438	n:40000
KS ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
MEGF6   40000 perm   11 sec   (3698 perm/sec)   p_kst 1.310000e-02   p_cons 7.109500e-01   p_joint 5.670000e-02

Joint ci ratio: 8.537205e-02	ci left: 3.873007e-02	ci right 4.220354e-02	k: 2022	n:50000
Cons ci ratio: 1.149559e-02	ci left: 6.952591e-01	ci right 7.033177e-01	k: 34965	n:50000
KS ci ratio: 1.507657e-01	ci left: 1.233348e-02	ci right 1.436361e-02	k: 666	n:50000
MEGF6   50000 perm   14 sec   (3620 perm/sec)   p_kst 1.332000e-02   p_cons 6.993000e-01   p_joint 4.044000e-02

Joint ci ratio: 6.773636e-02	ci left: 5.107312e-02	ci right 5.467029e-02	k: 3171	n:60000
Cons ci ratio: 1.047738e-02	ci left: 6.962819e-01	ci right 7.036321e-01	k: 41998	n:60000
KS ci ratio: 1.376648e-01	ci left: 1.241474e-02	ci right 1.426611e-02	k: 799	n:60000
MEGF6   60000 perm   17 sec   (3557 perm/sec)   p_kst 1.331667e-02   p_cons 6.999667e-01   p_joint 5.285000e-02

Joint ci ratio: 6.213476e-02	ci left: 5.212590e-02	ci right 5.548264e-02	k: 3765	n:70000
Cons ci ratio: 9.693141e-03	ci left: 6.968622e-01	ci right 7.036641e-01	k: 49019	n:70000
KS ci ratio: 1.281740e-01	ci left: 1.233994e-02	ci right 1.404362e-02	k: 922	n:70000
MEGF6   70000 perm   20 sec   (3490 perm/sec)   p_kst 1.317143e-02   p_cons 7.002714e-01   p_joint 5.378571e-02

Joint ci ratio: 5.481992e-02	ci left: 5.842575e-02	ci right 6.173124e-02	k: 4805	n:80000
Cons ci ratio: 8.803696e-03	ci left: 7.093498e-01	ci right 7.156348e-01	k: 57000	n:80000
KS ci ratio: 1.198877e-01	ci left: 1.239631e-02	ci right 1.398928e-02	k: 1054	n:80000
MEGF6   80000 perm   23 sec   (3430 perm/sec)   p_kst 1.317500e-02   p_cons 7.125000e-01   p_joint 6.006250e-02

Joint ci ratio: 5.010038e-02	ci left: 6.209104e-02	ci right 6.529271e-02	k: 5731	n:90000
Cons ci ratio: 8.309440e-03	ci left: 7.090738e-01	ci right 7.150014e-01	k: 64084	n:90000
KS ci ratio: 1.121194e-01	ci left: 1.264817e-02	ci right 1.416122e-02	k: 1205	n:90000
MEGF6   90000 perm   27 sec   (3374 perm/sec)   p_kst 1.338889e-02   p_cons 7.120444e-01   p_joint 6.367778e-02

Joint ci ratio: 5.198577e-02	ci left: 5.239968e-02	ci right 5.520627e-02	k: 5379	n:100000
Cons ci ratio: 7.890229e-03	ci left: 7.088513e-01	ci right 7.144764e-01	k: 71167	n:100000
KS ci ratio: 1.064867e-01	ci left: 1.265755e-02	ci right 1.409088e-02	k: 1336	n:100000
MEGF6   100000 perm   30 sec   (3317 perm/sec)   p_kst 1.336000e-02   p_cons 7.116700e-01   p_joint 5.379000e-02

Joint ci ratio: 5.076058e-02	ci left: 5.012037e-02	ci right 5.273971e-02	k: 5656	n:110000
Cons ci ratio: 7.742833e-03	ci left: 6.969905e-01	ci right 7.024172e-01	k: 76968	n:110000
KS ci ratio: 1.018016e-01	ci left: 1.262248e-02	ci right 1.398518e-02	k: 1462	n:110000
MEGF6   110000 perm   34 sec   (3262 perm/sec)   p_kst 1.329091e-02   p_cons 6.997091e-01   p_joint 5.141818e-02

Joint ci ratio: 5.000460e-02	ci left: 4.749717e-02	ci right 4.994136e-02	k: 5845	n:120000
Cons ci ratio: 7.412039e-03	ci left: 6.971727e-01	ci right 7.023677e-01	k: 83973	n:120000
KS ci ratio: 9.709835e-02	ci left: 1.274893e-02	ci right 1.405808e-02	k: 1607	n:120000
MEGF6   120000 perm   37 sec   (3207 perm/sec)   p_kst 1.339167e-02   p_cons 6.997750e-01   p_joint 4.870833e-02

Outputting figure to mutsig2_images.part000000000104/MEGF6.3_4774_120000_0.013392_0.69978_0.048708.png
                gene_name: MEGF6
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 55 percent done.
MEIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
Cons ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
KS ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
MEIS3   10000 perm   2 sec   (5963 perm/sec)   p_kst 4.590000e-01   p_cons 8.989000e-01   p_joint 7.005000e-01

Outputting figure to mutsig2_images.part000000000104/MEIS3.3_1314_10000_0.459_0.8989_0.7005.png
                gene_name: MEIS3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 57 percent done.
MEOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
Cons ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
KS ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
MEOX1   10000 perm   2 sec   (6251 perm/sec)   p_kst 1.992000e-01   p_cons 9.100000e-01   p_joint 3.351000e-01

Outputting figure to mutsig2_images.part000000000104/MEOX1.3_777_10000_0.1992_0.91_0.3351.png
                gene_name: MEOX1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 59 percent done.
MEP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
Cons ci ratio: 2.845979e-02	ci left: 6.453876e-01	ci right 6.641221e-01	k: 6548	n:10000
KS ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
MEP1B   10000 perm   2 sec   (5458 perm/sec)   p_kst 3.160000e-01   p_cons 6.548000e-01   p_joint 4.271000e-01

Outputting figure to mutsig2_images.part000000000104/MEP1B.3_2166_10000_0.316_0.6548_0.4271.png
                gene_name: MEP1B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 61 percent done.
MEPCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
KS ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
MEPCE   10000 perm   2 sec   (5439 perm/sec)   p_kst 5.038000e-01   p_cons 1.060000e-01   p_joint 3.581000e-01

Joint ci ratio: 3.996947e-02	ci left: 3.182112e-01	ci right 3.312398e-01	k: 6494	n:20000
Cons ci ratio: 8.028516e-02	ci left: 1.022081e-01	ci right 1.108067e-01	k: 2129	n:20000
KS ci ratio: 2.726021e-02	ci left: 5.013457e-01	ci right 5.152519e-01	k: 10166	n:20000
MEPCE   20000 perm   4 sec   (4777 perm/sec)   p_kst 5.083000e-01   p_cons 1.064500e-01   p_joint 3.247000e-01

Outputting figure to mutsig2_images.part000000000104/MEPCE.3_2086_20000_0.5083_0.10645_0.3247.png
                gene_name: MEPCE
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 63 percent done.
METAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
KS ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
METAP1   10000 perm   2 sec   (6198 perm/sec)   p_kst 5.014000e-01   p_cons 7.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METAP1.3_1205_10000_0.5014_0.7593_1.png
                gene_name: METAP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
METT11D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
Cons ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
KS ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
METT11D1   10000 perm   2 sec   (5941 perm/sec)   p_kst 9.182000e-01   p_cons 3.605000e-01   p_joint 6.099000e-01

Outputting figure to mutsig2_images.part000000000104/METT11D1.3_1496_10000_0.9182_0.3605_0.6099.png
                gene_name: METT11D1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 67 percent done.
METTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
KS ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
METTL4   10000 perm   2 sec   (6083 perm/sec)   p_kst 1.382000e-01   p_cons 9.427000e-01   p_joint 3.581000e-01

Outputting figure to mutsig2_images.part000000000104/METTL4.3_1451_10000_0.1382_0.9427_0.3581.png
                gene_name: METTL4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
MFAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
MFAP1   10000 perm   2 sec   (6199 perm/sec)   p_kst 7.300000e-03   p_cons 1.000000e-03   p_joint 0

Joint ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
Cons ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
KS ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
MFAP1   20000 perm   4 sec   (5399 perm/sec)   p_kst 9.350000e-03   p_cons 9.000000e-04   p_joint 1.400000e-03

Joint ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
Cons ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
KS ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
MFAP1   30000 perm   6 sec   (5103 perm/sec)   p_kst 9.133333e-03   p_cons 9.000000e-04   p_joint 3.666667e-04

Joint ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
Cons ci ratio: 6.355979e-01	ci left: 6.513664e-04	ci right 1.274768e-03	k: 37	n:40000
KS ci ratio: 2.012037e-01	ci left: 8.453845e-03	ci right 1.036839e-02	k: 375	n:40000
MFAP1   40000 perm   8 sec   (4919 perm/sec)   p_kst 9.375000e-03   p_cons 9.250000e-04   p_joint 3.000000e-04

Joint ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
Cons ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
KS ci ratio: 1.813306e-01	ci left: 8.419934e-03	ci right 1.011777e-02	k: 462	n:50000
MFAP1   50000 perm   10 sec   (4778 perm/sec)   p_kst 9.240000e-03   p_cons 2.800000e-04   p_joint 2.800000e-04

Joint ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
Cons ci ratio: 1.012005e+00	ci left: 1.275712e-04	ci right 3.914627e-04	k: 14	n:60000
KS ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
MFAP1   60000 perm   13 sec   (4652 perm/sec)   p_kst 9.216667e-03   p_cons 2.333333e-04   p_joint 3.166667e-04

Joint ci ratio: 9.798810e-01	ci left: 1.199389e-04	ci right 3.534071e-04	k: 15	n:70000
Cons ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
KS ci ratio: 1.525653e-01	ci left: 8.629675e-03	ci right 1.006858e-02	k: 653	n:70000
MFAP1   70000 perm   15 sec   (4533 perm/sec)   p_kst 9.328571e-03   p_cons 2.285714e-04   p_joint 2.142857e-04

Joint ci ratio: 9.798959e-01	ci left: 1.049460e-04	ci right 3.092339e-04	k: 15	n:80000
Cons ci ratio: 8.991973e-01	ci left: 1.333545e-04	ci right 3.555738e-04	k: 18	n:80000
KS ci ratio: 1.428498e-01	ci left: 8.658505e-03	ci right 1.000244e-02	k: 745	n:80000
MFAP1   80000 perm   18 sec   (4430 perm/sec)   p_kst 9.312500e-03   p_cons 2.250000e-04   p_joint 1.875000e-04

Joint ci ratio: 9.799074e-01	ci left: 9.328497e-05	ci right 2.748764e-04	k: 15	n:90000
Cons ci ratio: 8.553096e-01	ci left: 1.357442e-04	ci right 3.431834e-04	k: 20	n:90000
KS ci ratio: 1.347004e-01	ci left: 8.693936e-03	ci right 9.960215e-03	k: 838	n:90000
MFAP1   90000 perm   21 sec   (4336 perm/sec)   p_kst 9.311111e-03   p_cons 2.222222e-04   p_joint 1.666667e-04

Joint ci ratio: 9.238651e-01	ci left: 9.903428e-05	ci right 2.721726e-04	k: 17	n:100000
Cons ci ratio: 8.172784e-01	ci left: 1.378778e-04	ci right 3.330638e-04	k: 22	n:100000
KS ci ratio: 1.283607e-01	ci left: 8.646568e-03	ci right 9.842157e-03	k: 923	n:100000
MFAP1   100000 perm   24 sec   (4243 perm/sec)   p_kst 9.230000e-03   p_cons 2.200000e-04   p_joint 1.700000e-04

Joint ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
Cons ci ratio: 8.000757e-01	ci left: 1.325502e-04	ci right 3.137226e-04	k: 23	n:110000
KS ci ratio: 1.233338e-01	ci left: 8.538453e-03	ci right 9.669475e-03	k: 1000	n:110000
MFAP1   110000 perm   26 sec   (4158 perm/sec)   p_kst 9.090909e-03   p_cons 2.090909e-04   p_joint 1.181818e-04

Joint ci ratio: 1.047599e+00	ci left: 5.768416e-05	ci right 1.852462e-04	k: 13	n:120000
Cons ci ratio: 7.686888e-01	ci left: 1.348267e-04	ci right 3.075258e-04	k: 25	n:120000
KS ci ratio: 1.188544e-01	ci left: 8.449124e-03	ci right 9.524806e-03	k: 1077	n:120000
MFAP1   120000 perm   29 sec   (4078 perm/sec)   p_kst 8.975000e-03   p_cons 2.083333e-04   p_joint 1.083333e-04

Joint ci ratio: 1.131550e+00	ci left: 4.224043e-05	ci right 1.513952e-04	k: 11	n:130000
Cons ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
KS ci ratio: 1.133057e-01	ci left: 8.605886e-03	ci right 9.646956e-03	k: 1185	n:130000
MFAP1   130000 perm   33 sec   (3997 perm/sec)   p_kst 9.115385e-03   p_cons 2.000000e-04   p_joint 8.461538e-05

Joint ci ratio: 1.131554e+00	ci left: 3.922321e-05	ci right 1.405816e-04	k: 11	n:140000
Cons ci ratio: 7.039723e-01	ci left: 1.445822e-04	ci right 3.058922e-04	k: 30	n:140000
KS ci ratio: 1.089362e-01	ci left: 8.664797e-03	ci right 9.669976e-03	k: 1282	n:140000
MFAP1   140000 perm   36 sec   (3927 perm/sec)   p_kst 9.157143e-03   p_cons 2.142857e-04   p_joint 7.857143e-05

Joint ci ratio: 1.047612e+00	ci left: 4.614713e-05	ci right 1.481981e-04	k: 13	n:150000
Cons ci ratio: 6.928884e-01	ci left: 1.404242e-04	ci right 2.933341e-04	k: 31	n:150000
KS ci ratio: 1.048063e-01	ci left: 8.755480e-03	ci right 9.730298e-03	k: 1385	n:150000
MFAP1   150000 perm   39 sec   (3856 perm/sec)   p_kst 9.233333e-03   p_cons 2.066667e-04   p_joint 8.666667e-05

Joint ci ratio: 1.012089e+00	ci left: 4.783786e-05	ci right 1.468058e-04	k: 14	n:160000
Cons ci ratio: 6.928932e-01	ci left: 1.316474e-04	ci right 2.750015e-04	k: 31	n:160000
KS ci ratio: 1.011130e-01	ci left: 8.835455e-03	ci right 9.782453e-03	k: 1488	n:160000
MFAP1   160000 perm   42 sec   (3792 perm/sec)   p_kst 9.300000e-03   p_cons 1.937500e-04   p_joint 8.750000e-05

Joint ci ratio: 1.012092e+00	ci left: 4.502383e-05	ci right 1.381704e-04	k: 14	n:170000
Cons ci ratio: 6.625308e-01	ci left: 1.385097e-04	ci right 2.794688e-04	k: 34	n:170000
KS ci ratio: 9.828432e-02	ci left: 8.814722e-03	ci right 9.731542e-03	k: 1575	n:170000
MFAP1   170000 perm   46 sec   (3730 perm/sec)   p_kst 9.264706e-03   p_cons 2.000000e-04   p_joint 8.235294e-05

Joint ci ratio: 9.799537e-01	ci left: 4.664176e-05	ci right 1.374419e-04	k: 15	n:180000
Cons ci ratio: 6.443760e-01	ci left: 1.400813e-04	ci right 2.768737e-04	k: 36	n:180000
KS ci ratio: 9.542019e-02	ci left: 8.845437e-03	ci right 9.737141e-03	k: 1671	n:180000
MFAP1   180000 perm   49 sec   (3668 perm/sec)   p_kst 9.283333e-03   p_cons 2.000000e-04   p_joint 8.333333e-05

Joint ci ratio: 9.799562e-01	ci left: 4.418689e-05	ci right 1.302083e-04	k: 15	n:190000
Cons ci ratio: 6.197395e-01	ci left: 1.459661e-04	ci right 2.805909e-04	k: 39	n:190000
KS ci ratio: 9.308542e-02	ci left: 8.816705e-03	ci right 9.682578e-03	k: 1756	n:190000
MFAP1   190000 perm   53 sec   (3608 perm/sec)   p_kst 9.242105e-03   p_cons 2.052632e-04   p_joint 7.894737e-05

Joint ci ratio: 9.799583e-01	ci left: 4.197752e-05	ci right 1.236981e-04	k: 15	n:200000
Cons ci ratio: 6.197429e-01	ci left: 1.386676e-04	ci right 2.665619e-04	k: 39	n:200000
KS ci ratio: 9.049352e-02	ci left: 8.874174e-03	ci right 9.720140e-03	k: 1858	n:200000
MFAP1   200000 perm   56 sec   (3553 perm/sec)   p_kst 9.290000e-03   p_cons 1.950000e-04   p_joint 7.500000e-05

Joint ci ratio: 9.506989e-01	ci left: 4.355005e-05	ci right 1.237256e-04	k: 16	n:210000
Cons ci ratio: 6.048072e-01	ci left: 1.401098e-04	ci right 2.648533e-04	k: 41	n:210000
KS ci ratio: 8.822031e-02	ci left: 8.903183e-03	ci right 9.729494e-03	k: 1955	n:210000
MFAP1   210000 perm   60 sec   (3500 perm/sec)   p_kst 9.309524e-03   p_cons 1.952381e-04   p_joint 7.619048e-05

Joint ci ratio: 9.507008e-01	ci left: 4.157047e-05	ci right 1.181019e-04	k: 16	n:220000
Cons ci ratio: 5.977346e-01	ci left: 1.375938e-04	ci right 2.580450e-04	k: 42	n:220000
KS ci ratio: 8.617380e-02	ci left: 8.916451e-03	ci right 9.723830e-03	k: 2049	n:220000
MFAP1   220000 perm   64 sec   (3445 perm/sec)   p_kst 9.313636e-03   p_cons 1.909091e-04   p_joint 7.272727e-05

Joint ci ratio: 9.239147e-01	ci left: 4.305764e-05	ci right 1.183393e-04	k: 17	n:230000
Cons ci ratio: 5.843007e-01	ci left: 1.390054e-04	ci right 2.568087e-04	k: 44	n:230000
KS ci ratio: 8.438268e-02	ci left: 8.903225e-03	ci right 9.691824e-03	k: 2137	n:230000
MFAP1   230000 perm   68 sec   (3392 perm/sec)   p_kst 9.291304e-03   p_cons 1.913043e-04   p_joint 7.391304e-05

Joint ci ratio: 1.087181e+00	ci left: 2.583599e-05	ci right 8.733831e-05	k: 12	n:240000
Cons ci ratio: 5.779159e-01	ci left: 1.367670e-04	ci right 2.508818e-04	k: 45	n:240000
KS ci ratio: 8.251192e-02	ci left: 8.932075e-03	ci right 9.704845e-03	k: 2235	n:240000
MFAP1   240000 perm   72 sec   (3342 perm/sec)   p_kst 9.312500e-03   p_cons 1.875000e-04   p_joint 5.000000e-05

Joint ci ratio: 1.131577e+00	ci left: 2.196484e-05	ci right 7.872679e-05	k: 11	n:250000
Cons ci ratio: 5.779181e-01	ci left: 1.312962e-04	ci right 2.408468e-04	k: 45	n:250000
KS ci ratio: 8.060359e-02	ci left: 8.994074e-03	ci right 9.753366e-03	k: 2342	n:250000
MFAP1   250000 perm   76 sec   (3291 perm/sec)   p_kst 9.368000e-03   p_cons 1.800000e-04   p_joint 4.400000e-05

Joint ci ratio: 1.012109e+00	ci left: 2.943850e-05	ci right 9.034305e-05	k: 14	n:260000
Cons ci ratio: 5.435508e-01	ci left: 1.460528e-04	ci right 2.578981e-04	k: 51	n:260000
KS ci ratio: 7.914857e-02	ci left: 8.976076e-03	ci right 9.719538e-03	k: 2429	n:260000
MFAP1   260000 perm   80 sec   (3243 perm/sec)   p_kst 9.342308e-03   p_cons 1.961538e-04   p_joint 5.384615e-05

Joint ci ratio: 1.012110e+00	ci left: 2.834817e-05	ci right 8.699707e-05	k: 14	n:270000
Cons ci ratio: 5.333901e-01	ci left: 1.470427e-04	ci right 2.567526e-04	k: 53	n:270000
KS ci ratio: 7.739799e-02	ci left: 9.046705e-03	ci right 9.778698e-03	k: 2540	n:270000
MFAP1   270000 perm   84 sec   (3196 perm/sec)   p_kst 9.407407e-03   p_cons 1.962963e-04   p_joint 5.185185e-05

Joint ci ratio: 9.507091e-01	ci left: 3.266242e-05	ci right 9.279477e-05	k: 16	n:280000
Cons ci ratio: 5.191629e-01	ci left: 1.510813e-04	ci right 2.597089e-04	k: 56	n:280000
KS ci ratio: 7.583082e-02	ci left: 9.094936e-03	ci right 9.815273e-03	k: 2646	n:280000
MFAP1   280000 perm   89 sec   (3151 perm/sec)   p_kst 9.450000e-03   p_cons 2.000000e-04   p_joint 5.714286e-05

Joint ci ratio: 9.799713e-01	ci left: 2.894989e-05	ci right 8.530967e-05	k: 15	n:290000
Cons ci ratio: 5.146689e-01	ci left: 1.488696e-04	ci right 2.546482e-04	k: 57	n:290000
KS ci ratio: 7.439607e-02	ci left: 9.129824e-03	ci right 9.838651e-03	k: 2749	n:290000
MFAP1   290000 perm   93 sec   (3108 perm/sec)   p_kst 9.479310e-03   p_cons 1.965517e-04   p_joint 5.172414e-05

Joint ci ratio: 1.047638e+00	ci left: 2.307337e-05	ci right 7.410018e-05	k: 13	n:300000
Cons ci ratio: 5.018527e-01	ci left: 1.526244e-04	ci right 2.574323e-04	k: 60	n:300000
KS ci ratio: 7.320837e-02	ci left: 9.119958e-03	ci right 9.816234e-03	k: 2839	n:300000
MFAP1   300000 perm   98 sec   (3067 perm/sec)   p_kst 9.463333e-03   p_cons 2.000000e-04   p_joint 4.333333e-05

Joint ci ratio: 1.047639e+00	ci left: 2.232906e-05	ci right 7.170989e-05	k: 13	n:310000
Cons ci ratio: 4.977899e-01	ci left: 1.505199e-04	ci right 2.527576e-04	k: 61	n:310000
KS ci ratio: 7.181642e-02	ci left: 9.177347e-03	ci right 9.864127e-03	k: 2950	n:310000
MFAP1   310000 perm   102 sec   (3026 perm/sec)   p_kst 9.516129e-03   p_cons 1.967742e-04   p_joint 4.193548e-05

Joint ci ratio: 7.839681e-01	ci left: 4.805449e-05	ci right 1.115920e-04	k: 24	n:320000
Cons ci ratio: 4.861660e-01	ci left: 1.540277e-04	ci right 2.553885e-04	k: 64	n:320000
KS ci ratio: 7.073456e-02	ci left: 9.169860e-03	ci right 9.845317e-03	k: 3041	n:320000
MFAP1   320000 perm   107 sec   (2985 perm/sec)   p_kst 9.503125e-03   p_cons 2.000000e-04   p_joint 7.500000e-05

Joint ci ratio: 7.687438e-01	ci left: 4.902689e-05	ci right 1.118311e-04	k: 25	n:330000
Cons ci ratio: 4.824697e-01	ci left: 1.520202e-04	ci right 2.510473e-04	k: 65	n:330000
KS ci ratio: 6.965529e-02	ci left: 9.174812e-03	ci right 9.839905e-03	k: 3136	n:330000
MFAP1   330000 perm   112 sec   (2946 perm/sec)   p_kst 9.503030e-03   p_cons 1.969697e-04   p_joint 7.575758e-05

Joint ci ratio: 8.001372e-01	ci left: 4.288290e-05	ci right 1.015021e-04	k: 23	n:340000
Cons ci ratio: 4.788563e-01	ci left: 1.501337e-04	ci right 2.469587e-04	k: 66	n:340000
KS ci ratio: 6.875293e-02	ci left: 9.144853e-03	ci right 9.798843e-03	k: 3219	n:340000
MFAP1   340000 perm   117 sec   (2905 perm/sec)   p_kst 9.467647e-03   p_cons 1.941176e-04   p_joint 6.764706e-05

Joint ci ratio: 7.839709e-01	ci left: 4.393549e-05	ci right 1.020271e-04	k: 24	n:350000
Cons ci ratio: 4.619283e-01	ci left: 1.584364e-04	ci right 2.558699e-04	k: 71	n:350000
KS ci ratio: 6.767820e-02	ci left: 9.172841e-03	ci right 9.818176e-03	k: 3322	n:350000
MFAP1   350000 perm   122 sec   (2866 perm/sec)   p_kst 9.491429e-03   p_cons 2.028571e-04   p_joint 6.857143e-05

Joint ci ratio: 7.839717e-01	ci left: 4.271504e-05	ci right 9.919310e-05	k: 24	n:360000
Cons ci ratio: 4.556433e-01	ci left: 1.589487e-04	ci right 2.549560e-04	k: 73	n:360000
KS ci ratio: 6.665234e-02	ci left: 9.199350e-03	ci right 9.836360e-03	k: 3425	n:360000
MFAP1   360000 perm   127 sec   (2830 perm/sec)   p_kst 9.513889e-03   p_cons 2.027778e-04   p_joint 6.666667e-05

Joint ci ratio: 7.687472e-01	ci left: 4.372663e-05	ci right 9.974145e-05	k: 25	n:370000
Cons ci ratio: 4.496080e-01	ci left: 1.594418e-04	ci right 2.540831e-04	k: 75	n:370000
KS ci ratio: 6.581311e-02	ci left: 9.184615e-03	ci right 9.812292e-03	k: 3513	n:370000
MFAP1   370000 perm   132 sec   (2793 perm/sec)   p_kst 9.494595e-03   p_cons 2.027027e-04   p_joint 6.756757e-05

Joint ci ratio: 7.687479e-01	ci left: 4.257592e-05	ci right 9.711672e-05	k: 25	n:380000
Cons ci ratio: 4.409880e-01	ci left: 1.622553e-04	ci right 2.561712e-04	k: 78	n:380000
KS ci ratio: 6.497750e-02	ci left: 9.178471e-03	ci right 9.797464e-03	k: 3604	n:380000
MFAP1   380000 perm   138 sec   (2757 perm/sec)   p_kst 9.484211e-03   p_cons 2.052632e-04   p_joint 6.578947e-05

Joint ci ratio: 7.687486e-01	ci left: 4.148422e-05	ci right 9.462659e-05	k: 25	n:390000
Cons ci ratio: 4.409892e-01	ci left: 1.580948e-04	ci right 2.496029e-04	k: 78	n:390000
KS ci ratio: 6.413790e-02	ci left: 9.182784e-03	ci right 9.793768e-03	k: 3699	n:390000
MFAP1   390000 perm   143 sec   (2725 perm/sec)   p_kst 9.484615e-03   p_cons 2.000000e-04   p_joint 6.410256e-05

Joint ci ratio: 7.687493e-01	ci left: 4.044710e-05	ci right 9.226096e-05	k: 25	n:400000
Cons ci ratio: 4.355109e-01	ci left: 1.585906e-04	ci right 2.489112e-04	k: 80	n:400000
KS ci ratio: 6.327113e-02	ci left: 9.204155e-03	ci right 9.807982e-03	k: 3801	n:400000
MFAP1   400000 perm   148 sec   (2694 perm/sec)   p_kst 9.502500e-03   p_cons 2.000000e-04   p_joint 6.250000e-05

Joint ci ratio: 7.543786e-01	ci left: 4.142495e-05	ci right 9.291576e-05	k: 26	n:410000
Cons ci ratio: 4.251391e-01	ci left: 1.634219e-04	ci right 2.536468e-04	k: 84	n:410000
KS ci ratio: 6.249518e-02	ci left: 9.207728e-03	ci right 9.804113e-03	k: 3896	n:410000
MFAP1   410000 perm   154 sec   (2663 perm/sec)   p_kst 9.502439e-03   p_cons 2.048780e-04   p_joint 6.341463e-05

Joint ci ratio: 5.488758e-01	ci left: 8.836069e-05	ci right 1.569465e-04	k: 50	n:420000
Cons ci ratio: 4.178291e-01	ci left: 1.659162e-04	ci right 2.555038e-04	k: 87	n:420000
KS ci ratio: 6.184100e-02	ci left: 9.183040e-03	ci right 9.771376e-03	k: 3979	n:420000
MFAP1   420000 perm   160 sec   (2631 perm/sec)   p_kst 9.473810e-03   p_cons 2.071429e-04   p_joint 1.190476e-04

Joint ci ratio: 5.435727e-01	ci left: 8.831019e-05	ci right 1.559403e-04	k: 51	n:430000
Cons ci ratio: 4.108837e-01	ci left: 1.683070e-04	ci right 2.572619e-04	k: 90	n:430000
KS ci ratio: 6.108562e-02	ci left: 9.196177e-03	ci right 9.777904e-03	k: 4078	n:430000
MFAP1   430000 perm   165 sec   (2600 perm/sec)   p_kst 9.483721e-03   p_cons 2.093023e-04   p_joint 1.186047e-04

Joint ci ratio: 5.599682e-01	ci left: 8.043609e-05	ci right 1.446361e-04	k: 48	n:440000
Cons ci ratio: 4.042735e-01	ci left: 1.706010e-04	ci right 2.589286e-04	k: 93	n:440000
KS ci ratio: 6.047429e-02	ci left: 9.172939e-03	ci right 9.747185e-03	k: 4161	n:440000
MFAP1   440000 perm   171 sec   (2571 perm/sec)   p_kst 9.456818e-03   p_cons 2.113636e-04   p_joint 1.090909e-04

Joint ci ratio: 6.929392e-01	ci left: 4.680712e-05	ci right 9.778087e-05	k: 31	n:450000
Cons ci ratio: 4.042744e-01	ci left: 1.668098e-04	ci right 2.531747e-04	k: 93	n:450000
KS ci ratio: 5.984537e-02	ci left: 9.161708e-03	ci right 9.729080e-03	k: 4249	n:450000
MFAP1   450000 perm   177 sec   (2542 perm/sec)   p_kst 9.442222e-03   p_cons 2.066667e-04   p_joint 6.888889e-05

Joint ci ratio: 6.722489e-01	ci left: 4.938241e-05	ci right 1.007470e-04	k: 33	n:460000
Cons ci ratio: 3.919570e-01	ci left: 1.749214e-04	ci right 2.620133e-04	k: 99	n:460000
KS ci ratio: 5.916000e-02	ci left: 9.174557e-03	ci right 9.735996e-03	k: 4348	n:460000
MFAP1   460000 perm   183 sec   (2512 perm/sec)   p_kst 9.452174e-03   p_cons 2.152174e-04   p_joint 7.173913e-05

Joint ci ratio: 6.625756e-01	ci left: 5.009835e-05	ci right 1.010870e-04	k: 34	n:470000
Cons ci ratio: 3.862063e-01	ci left: 1.769583e-04	ci right 2.634429e-04	k: 102	n:470000
KS ci ratio: 5.849765e-02	ci left: 9.186895e-03	ci right 9.742581e-03	k: 4447	n:470000
MFAP1   470000 perm   189 sec   (2485 perm/sec)   p_kst 9.461702e-03   p_cons 2.170213e-04   p_joint 7.234043e-05

Joint ci ratio: 6.929408e-01	ci left: 4.388165e-05	ci right 9.166964e-05	k: 31	n:480000
Cons ci ratio: 3.843456e-01	ci left: 1.751531e-04	ci right 2.602388e-04	k: 103	n:480000
KS ci ratio: 5.783138e-02	ci left: 9.206967e-03	ci right 9.757312e-03	k: 4550	n:480000
MFAP1   480000 perm   195 sec   (2458 perm/sec)   p_kst 9.479167e-03   p_cons 2.145833e-04   p_joint 6.458333e-05

Joint ci ratio: 6.929413e-01	ci left: 4.298610e-05	ci right 8.979886e-05	k: 31	n:490000
Cons ci ratio: 3.843464e-01	ci left: 1.715785e-04	ci right 2.549279e-04	k: 103	n:490000
KS ci ratio: 5.723706e-02	ci left: 9.210158e-03	ci right 9.754849e-03	k: 4645	n:490000
MFAP1   490000 perm   201 sec   (2433 perm/sec)   p_kst 9.479592e-03   p_cons 2.102041e-04   p_joint 6.326531e-05

Joint ci ratio: 6.929418e-01	ci left: 4.212637e-05	ci right 8.800291e-05	k: 31	n:500000
Cons ci ratio: 3.825123e-01	ci left: 1.699541e-04	ci right 2.520213e-04	k: 104	n:500000
KS ci ratio: 5.667276e-02	ci left: 9.209306e-03	ci right 9.748401e-03	k: 4738	n:500000
MFAP1   500000 perm   208 sec   (2406 perm/sec)   p_kst 9.476000e-03   p_cons 2.080000e-04   p_joint 6.200000e-05

Joint ci ratio: 6.929422e-01	ci left: 4.130035e-05	ci right 8.627738e-05	k: 31	n:510000
Cons ci ratio: 3.807041e-01	ci left: 1.683944e-04	ci right 2.492277e-04	k: 105	n:510000
KS ci ratio: 5.608383e-02	ci left: 9.222047e-03	ci right 9.756097e-03	k: 4838	n:510000
MFAP1   510000 perm   214 sec   (2382 perm/sec)   p_kst 9.486275e-03   p_cons 2.058824e-04   p_joint 6.078431e-05

Joint ci ratio: 6.823621e-01	ci left: 4.209263e-05	ci right 8.687285e-05	k: 32	n:520000
Cons ci ratio: 3.789213e-01	ci left: 1.668955e-04	ci right 2.465408e-04	k: 106	n:520000
KS ci ratio: 5.563813e-02	ci left: 9.192601e-03	ci right 9.720579e-03	k: 4916	n:520000
MFAP1   520000 perm   221 sec   (2358 perm/sec)   p_kst 9.453846e-03   p_cons 2.038462e-04   p_joint 6.153846e-05

Joint ci ratio: 6.823625e-01	ci left: 4.129842e-05	ci right 8.523376e-05	k: 32	n:530000
Cons ci ratio: 3.771634e-01	ci left: 1.654540e-04	ci right 2.439544e-04	k: 107	n:530000
KS ci ratio: 5.524756e-02	ci left: 9.149394e-03	ci right 9.671084e-03	k: 4986	n:530000
MFAP1   530000 perm   227 sec   (2334 perm/sec)   p_kst 9.407547e-03   p_cons 2.018868e-04   p_joint 6.037736e-05

Joint ci ratio: 6.823629e-01	ci left: 4.053363e-05	ci right 8.365537e-05	k: 32	n:540000
Cons ci ratio: 3.771641e-01	ci left: 1.623899e-04	ci right 2.394368e-04	k: 107	n:540000
KS ci ratio: 5.477768e-02	ci left: 9.137028e-03	ci right 9.653441e-03	k: 5072	n:540000
MFAP1   540000 perm   234 sec   (2311 perm/sec)   p_kst 9.392593e-03   p_cons 1.981481e-04   p_joint 5.925926e-05

Joint ci ratio: 6.823633e-01	ci left: 3.979665e-05	ci right 8.213438e-05	k: 32	n:550000
Cons ci ratio: 3.754304e-01	ci left: 1.610836e-04	ci right 2.370728e-04	k: 108	n:550000
KS ci ratio: 5.427182e-02	ci left: 9.141273e-03	ci right 9.653006e-03	k: 5167	n:550000
MFAP1   550000 perm   240 sec   (2288 perm/sec)   p_kst 9.394545e-03   p_cons 1.963636e-04   p_joint 5.818182e-05

Joint ci ratio: 6.823637e-01	ci left: 3.908599e-05	ci right 8.066772e-05	k: 32	n:560000
Cons ci ratio: 3.703678e-01	ci left: 1.630622e-04	ci right 2.386963e-04	k: 111	n:560000
KS ci ratio: 5.376941e-02	ci left: 9.148912e-03	ci right 9.656183e-03	k: 5264	n:560000
MFAP1   560000 perm   247 sec   (2266 perm/sec)   p_kst 9.400000e-03   p_cons 1.982143e-04   p_joint 5.714286e-05

Joint ci ratio: 6.625800e-01	ci left: 4.130909e-05	ci right 8.335268e-05	k: 34	n:570000
Cons ci ratio: 3.671046e-01	ci left: 1.633851e-04	ci right 2.383411e-04	k: 113	n:570000
KS ci ratio: 5.329575e-02	ci left: 9.151109e-03	ci right 9.653896e-03	k: 5358	n:570000
MFAP1   570000 perm   254 sec   (2244 perm/sec)   p_kst 9.400000e-03   p_cons 1.982456e-04   p_joint 5.964912e-05

Joint ci ratio: 6.533125e-01	ci left: 4.203273e-05	ci right 8.392406e-05	k: 35	n:580000
Cons ci ratio: 3.639262e-01	ci left: 1.636997e-04	ci right 2.379954e-04	k: 115	n:580000
KS ci ratio: 5.274172e-02	ci left: 9.185581e-03	ci right 9.684855e-03	k: 5471	n:580000
MFAP1   580000 perm   261 sec   (2223 perm/sec)   p_kst 9.432759e-03   p_cons 1.982759e-04   p_joint 6.034483e-05

Joint ci ratio: 6.533128e-01	ci left: 4.132031e-05	ci right 8.250163e-05	k: 35	n:590000
Cons ci ratio: 3.593093e-01	ci left: 1.655480e-04	ci right 2.395063e-04	k: 118	n:590000
KS ci ratio: 5.226605e-02	ci left: 9.197161e-03	ci right 9.692420e-03	k: 5571	n:590000
MFAP1   590000 perm   268 sec   (2202 perm/sec)   p_kst 9.442373e-03   p_cons 2.000000e-04   p_joint 5.932203e-05

Joint ci ratio: 6.533132e-01	ci left: 4.063163e-05	ci right 8.112662e-05	k: 35	n:600000
Cons ci ratio: 3.578093e-01	ci left: 1.643054e-04	ci right 2.373308e-04	k: 119	n:600000
KS ci ratio: 5.189547e-02	ci left: 9.175469e-03	ci right 9.665952e-03	k: 5651	n:600000
MFAP1   600000 perm   275 sec   (2182 perm/sec)   p_kst 9.418333e-03   p_cons 1.983333e-04   p_joint 5.833333e-05

Joint ci ratio: 6.276818e-01	ci left: 4.408407e-05	ci right 8.550387e-05	k: 38	n:610000
Cons ci ratio: 3.491850e-01	ci left: 1.705748e-04	ci right 2.441458e-04	k: 125	n:610000
KS ci ratio: 5.146020e-02	ci left: 9.180395e-03	ci right 9.666904e-03	k: 5747	n:610000
MFAP1   610000 perm   282 sec   (2162 perm/sec)   p_kst 9.421311e-03   p_cons 2.049180e-04   p_joint 6.229508e-05

Joint ci ratio: 6.276821e-01	ci left: 4.337303e-05	ci right 8.412480e-05	k: 38	n:620000
Cons ci ratio: 3.464463e-01	ci left: 1.707676e-04	ci right 2.437145e-04	k: 127	n:620000
KS ci ratio: 5.103130e-02	ci left: 9.186772e-03	ci right 9.669441e-03	k: 5844	n:620000
MFAP1   620000 perm   289 sec   (2142 perm/sec)   p_kst 9.425806e-03   p_cons 2.048387e-04   p_joint 6.129032e-05

Joint ci ratio: 6.121807e-01	ci left: 4.536004e-05	ci right 8.645718e-05	k: 40	n:630000
Cons ci ratio: 3.437710e-01	ci left: 1.709565e-04	ci right 2.432947e-04	k: 129	n:630000
KS ci ratio: 5.060865e-02	ci left: 9.194530e-03	ci right 9.673489e-03	k: 5942	n:630000
MFAP1   630000 perm   297 sec   (2123 perm/sec)   p_kst 9.431746e-03   p_cons 2.047619e-04   p_joint 6.349206e-05

Joint ci ratio: 6.048488e-01	ci left: 4.597274e-05	ci right 8.690702e-05	k: 41	n:640000
Cons ci ratio: 3.411568e-01	ci left: 1.711415e-04	ci right 2.428859e-04	k: 131	n:640000
KS ci ratio: 5.018375e-02	ci left: 9.206691e-03	ci right 9.682140e-03	k: 6043	n:640000
MFAP1   640000 perm   304 sec   (2103 perm/sec)   p_kst 9.442187e-03   p_cons 2.046875e-04   p_joint 6.406250e-05

Joint ci ratio: 5.977742e-01	ci left: 4.656947e-05	ci right 8.734024e-05	k: 42	n:650000
Cons ci ratio: 3.386013e-01	ci left: 1.713229e-04	ci right 2.424878e-04	k: 133	n:650000
KS ci ratio: 4.978573e-02	ci left: 9.212416e-03	ci right 9.684279e-03	k: 6140	n:650000
MFAP1   650000 perm   312 sec   (2084 perm/sec)   p_kst 9.446154e-03   p_cons 2.046154e-04   p_joint 6.461538e-05

Joint ci ratio: 5.909421e-01	ci left: 4.715086e-05	ci right 8.775767e-05	k: 43	n:660000
Cons ci ratio: 3.361023e-01	ci left: 1.715007e-04	ci right 2.420998e-04	k: 135	n:660000
KS ci ratio: 4.940904e-02	ci left: 9.213492e-03	ci right 9.681738e-03	k: 6234	n:660000
MFAP1   660000 perm   319 sec   (2066 perm/sec)   p_kst 9.445455e-03   p_cons 2.045455e-04   p_joint 6.515152e-05

Joint ci ratio: 5.843390e-01	ci left: 4.771751e-05	ci right 8.816012e-05	k: 44	n:670000
Cons ci ratio: 3.348737e-01	ci left: 1.703078e-04	ci right 2.401042e-04	k: 136	n:670000
KS ci ratio: 4.904467e-02	ci left: 9.213074e-03	ci right 9.677749e-03	k: 6327	n:670000
MFAP1   670000 perm   327 sec   (2048 perm/sec)   p_kst 9.443284e-03   p_cons 2.029851e-04   p_joint 6.567164e-05

Joint ci ratio: 5.779525e-01	ci left: 4.826997e-05	ci right 8.854833e-05	k: 45	n:680000
Cons ci ratio: 3.312661e-01	ci left: 1.718462e-04	ci right 2.413525e-04	k: 139	n:680000
KS ci ratio: 4.864239e-02	ci left: 9.230116e-03	ci right 9.691725e-03	k: 6432	n:680000
MFAP1   680000 perm   335 sec   (2029 perm/sec)   p_kst 9.458824e-03   p_cons 2.044118e-04   p_joint 6.617647e-05

Joint ci ratio: 5.779528e-01	ci left: 4.757040e-05	ci right 8.726504e-05	k: 45	n:690000
Cons ci ratio: 3.300896e-01	ci left: 1.706846e-04	ci right 2.394239e-04	k: 140	n:690000
KS ci ratio: 4.832827e-02	ci left: 9.216608e-03	ci right 9.674481e-03	k: 6516	n:690000
MFAP1   690000 perm   343 sec   (2011 perm/sec)   p_kst 9.443478e-03   p_cons 2.028986e-04   p_joint 6.521739e-05

Joint ci ratio: 5.779531e-01	ci left: 4.689082e-05	ci right 8.601841e-05	k: 45	n:700000
Cons ci ratio: 3.289255e-01	ci left: 1.695566e-04	ci right 2.375499e-04	k: 141	n:700000
KS ci ratio: 4.796516e-02	ci left: 9.224669e-03	ci right 9.679405e-03	k: 6615	n:700000
MFAP1   700000 perm   351 sec   (1994 perm/sec)   p_kst 9.450000e-03   p_cons 2.014286e-04   p_joint 6.428571e-05

Joint ci ratio: 5.717714e-01	ci left: 4.743387e-05	ci right 8.641816e-05	k: 46	n:710000
Cons ci ratio: 3.266333e-01	ci left: 1.697537e-04	ci right 2.372520e-04	k: 143	n:710000
KS ci ratio: 4.761728e-02	ci left: 9.229732e-03	ci right 9.681327e-03	k: 6712	n:710000
MFAP1   710000 perm   359 sec   (1977 perm/sec)   p_kst 9.453521e-03   p_cons 2.014085e-04   p_joint 6.478873e-05

Joint ci ratio: 5.657840e-01	ci left: 4.796404e-05	ci right 8.680467e-05	k: 47	n:720000
Cons ci ratio: 3.243884e-01	ci left: 1.699468e-04	ci right 2.369608e-04	k: 145	n:720000
KS ci ratio: 4.729439e-02	ci left: 9.227802e-03	ci right 9.676158e-03	k: 6804	n:720000
MFAP1   720000 perm   367 sec   (1960 perm/sec)   p_kst 9.450000e-03   p_cons 2.013889e-04   p_joint 6.527778e-05

Joint ci ratio: 5.657843e-01	ci left: 4.730699e-05	ci right 8.561558e-05	k: 47	n:730000
Cons ci ratio: 3.243888e-01	ci left: 1.676187e-04	ci right 2.337148e-04	k: 145	n:730000
KS ci ratio: 4.695736e-02	ci left: 9.234059e-03	ci right 9.679435e-03	k: 6902	n:730000
MFAP1   730000 perm   376 sec   (1943 perm/sec)   p_kst 9.454795e-03   p_cons 1.986301e-04   p_joint 6.438356e-05

Joint ci ratio: 6.929492e-01	ci left: 2.846368e-05	ci right 5.946167e-05	k: 31	n:740000
Cons ci ratio: 3.221896e-01	ci left: 1.678370e-04	ci right 2.334778e-04	k: 147	n:740000
KS ci ratio: 4.664762e-02	ci left: 9.232144e-03	ci right 9.674412e-03	k: 6994	n:740000
MFAP1   740000 perm   384 sec   (1927 perm/sec)   p_kst 9.451351e-03   p_cons 1.986486e-04   p_joint 4.189189e-05

Joint ci ratio: 6.929494e-01	ci left: 2.808416e-05	ci right 5.866886e-05	k: 31	n:750000
Cons ci ratio: 3.211068e-01	ci left: 1.668249e-04	ci right 2.318054e-04	k: 148	n:750000
KS ci ratio: 4.635384e-02	ci left: 9.226335e-03	ci right 9.665466e-03	k: 7083	n:750000
MFAP1   750000 perm   393 sec   (1911 perm/sec)   p_kst 9.444000e-03   p_cons 1.973333e-04   p_joint 4.133333e-05

Joint ci ratio: 6.823691e-01	ci left: 2.880014e-05	ci right 5.943955e-05	k: 32	n:760000
Cons ci ratio: 3.168811e-01	ci left: 1.694717e-04	ci right 2.344384e-04	k: 152	n:760000
KS ci ratio: 4.601376e-02	ci left: 9.241500e-03	ci right 9.678041e-03	k: 7188	n:760000
MFAP1   760000 perm   401 sec   (1895 perm/sec)   p_kst 9.457895e-03   p_cons 2.000000e-04   p_joint 4.210526e-05

Joint ci ratio: 6.823693e-01	ci left: 2.842611e-05	ci right 5.866762e-05	k: 32	n:770000
Cons ci ratio: 3.128180e-01	ci left: 1.720551e-04	ci right 2.369976e-04	k: 156	n:770000
KS ci ratio: 4.575712e-02	ci left: 9.225467e-03	ci right 9.658755e-03	k: 7269	n:770000
MFAP1   770000 perm   410 sec   (1880 perm/sec)   p_kst 9.440260e-03   p_cons 2.025974e-04   p_joint 4.155844e-05

Joint ci ratio: 6.823695e-01	ci left: 2.806167e-05	ci right 5.791548e-05	k: 32	n:780000
Cons ci ratio: 3.070058e-01	ci left: 1.769436e-04	ci right 2.422476e-04	k: 162	n:780000
KS ci ratio: 4.538954e-02	ci left: 9.256753e-03	ci right 9.687927e-03	k: 7387	n:780000
MFAP1   780000 perm   418 sec   (1865 perm/sec)   p_kst 9.470513e-03   p_cons 2.076923e-04   p_joint 4.102564e-05

Joint ci ratio: 6.823697e-01	ci left: 2.770646e-05	ci right 5.718237e-05	k: 32	n:790000
Cons ci ratio: 3.060686e-01	ci left: 1.758722e-04	ci right 2.405441e-04	k: 163	n:790000
KS ci ratio: 4.517674e-02	ci left: 9.227180e-03	ci right 9.654910e-03	k: 7457	n:790000
MFAP1   790000 perm   427 sec   (1850 perm/sec)   p_kst 9.439241e-03   p_cons 2.063291e-04   p_joint 4.050633e-05

Joint ci ratio: 6.823699e-01	ci left: 2.736013e-05	ci right 5.646760e-05	k: 32	n:800000
Cons ci ratio: 3.051399e-01	ci left: 1.748280e-04	ci right 2.388829e-04	k: 164	n:800000
KS ci ratio: 4.486773e-02	ci left: 9.239142e-03	ci right 9.664421e-03	k: 7560	n:800000
MFAP1   800000 perm   436 sec   (1835 perm/sec)   p_kst 9.450000e-03   p_cons 2.050000e-04   p_joint 4.000000e-05

Joint ci ratio: 6.823701e-01	ci left: 2.702234e-05	ci right 5.577047e-05	k: 32	n:810000
Cons ci ratio: 3.051403e-01	ci left: 1.726696e-04	ci right 2.359338e-04	k: 164	n:810000
KS ci ratio: 4.456204e-02	ci left: 9.252040e-03	ci right 9.674936e-03	k: 7664	n:810000
MFAP1   810000 perm   445 sec   (1820 perm/sec)   p_kst 9.461728e-03   p_cons 2.024691e-04   p_joint 3.950617e-05

Joint ci ratio: 6.722601e-01	ci left: 2.770221e-05	ci right 5.651694e-05	k: 33	n:820000
Cons ci ratio: 3.042200e-01	ci left: 1.716901e-04	ci right 2.343690e-04	k: 165	n:820000
KS ci ratio: 4.426539e-02	ci left: 9.263426e-03	ci right 9.683953e-03	k: 7767	n:820000
MFAP1   820000 perm   454 sec   (1805 perm/sec)   p_kst 9.471951e-03   p_cons 2.012195e-04   p_joint 4.024390e-05

Joint ci ratio: 6.722603e-01	ci left: 2.736844e-05	ci right 5.583602e-05	k: 33	n:830000
Cons ci ratio: 3.033080e-01	ci left: 1.707346e-04	ci right 2.328417e-04	k: 166	n:830000
KS ci ratio: 4.399434e-02	ci left: 9.266205e-03	ci right 9.684217e-03	k: 7863	n:830000
MFAP1   830000 perm   463 sec   (1791 perm/sec)   p_kst 9.473494e-03   p_cons 2.000000e-04   p_joint 3.975904e-05

Joint ci ratio: 6.722604e-01	ci left: 2.704263e-05	ci right 5.517131e-05	k: 33	n:840000
Cons ci ratio: 3.015079e-01	ci left: 1.709023e-04	ci right 2.326308e-04	k: 168	n:840000
KS ci ratio: 4.368391e-02	ci left: 9.287767e-03	ci right 9.703721e-03	k: 7975	n:840000
MFAP1   840000 perm   473 sec   (1776 perm/sec)   p_kst 9.494048e-03   p_cons 2.000000e-04   p_joint 3.928571e-05

Joint ci ratio: 6.625869e-01	ci left: 2.770132e-05	ci right 5.589555e-05	k: 34	n:850000
Cons ci ratio: 2.997396e-01	ci left: 1.710672e-04	ci right 2.324238e-04	k: 170	n:850000
KS ci ratio: 4.340977e-02	ci left: 9.296030e-03	ci right 9.709676e-03	k: 8076	n:850000
MFAP1   850000 perm   482 sec   (1763 perm/sec)   p_kst 9.501176e-03   p_cons 2.000000e-04   p_joint 4.000000e-05

Joint ci ratio: 6.625871e-01	ci left: 2.737921e-05	ci right 5.524560e-05	k: 34	n:860000
Cons ci ratio: 2.988671e-01	ci left: 1.701535e-04	ci right 2.309711e-04	k: 171	n:860000
KS ci ratio: 4.313540e-02	ci left: 9.306409e-03	ci right 9.717835e-03	k: 8179	n:860000
MFAP1   860000 perm   492 sec   (1750 perm/sec)   p_kst 9.510465e-03   p_cons 1.988372e-04   p_joint 3.953488e-05

Joint ci ratio: 6.625872e-01	ci left: 2.706450e-05	ci right 5.461060e-05	k: 34	n:870000
Cons ci ratio: 2.946151e-01	ci left: 1.735172e-04	ci right 2.344899e-04	k: 176	n:870000
KS ci ratio: 4.293688e-02	ci left: 9.285853e-03	ci right 9.694434e-03	k: 8255	n:870000
MFAP1   870000 perm   501 sec   (1736 perm/sec)   p_kst 9.488506e-03   p_cons 2.022989e-04   p_joint 3.908046e-05

Joint ci ratio: 6.533196e-01	ci left: 2.770331e-05	ci right 5.531381e-05	k: 35	n:880000
Cons ci ratio: 2.905395e-01	ci left: 1.768103e-04	ci right 2.379228e-04	k: 181	n:880000
KS ci ratio: 4.273072e-02	ci left: 9.270266e-03	ci right 9.676155e-03	k: 8335	n:880000
MFAP1   880000 perm   511 sec   (1723 perm/sec)   p_kst 9.471591e-03   p_cons 2.056818e-04   p_joint 3.977273e-05

Joint ci ratio: 6.533198e-01	ci left: 2.739204e-05	ci right 5.469231e-05	k: 35	n:890000
Cons ci ratio: 2.873981e-01	ci left: 1.789924e-04	ci right 2.400686e-04	k: 185	n:890000
KS ci ratio: 4.248166e-02	ci left: 9.275045e-03	ci right 9.678719e-03	k: 8433	n:890000
MFAP1   890000 perm   520 sec   (1711 perm/sec)   p_kst 9.475281e-03   p_cons 2.078652e-04   p_joint 3.932584e-05

Joint ci ratio: 6.533199e-01	ci left: 2.708768e-05	ci right 5.408462e-05	k: 35	n:900000
Cons ci ratio: 2.866288e-01	ci left: 1.780347e-04	ci right 2.385921e-04	k: 186	n:900000
KS ci ratio: 4.227443e-02	ci left: 9.263233e-03	ci right 9.664378e-03	k: 8516	n:900000
MFAP1   900000 perm   530 sec   (1698 perm/sec)   p_kst 9.462222e-03   p_cons 2.066667e-04   p_joint 3.888889e-05

Joint ci ratio: 6.533201e-01	ci left: 2.679001e-05	ci right 5.349029e-05	k: 35	n:910000
Cons ci ratio: 2.858657e-01	ci left: 1.770983e-04	ci right 2.371478e-04	k: 187	n:910000
KS ci ratio: 4.210482e-02	ci left: 9.236461e-03	ci right 9.634803e-03	k: 8585	n:910000
MFAP1   910000 perm   540 sec   (1686 perm/sec)   p_kst 9.434066e-03   p_cons 2.054945e-04   p_joint 3.846154e-05

Joint ci ratio: 6.533202e-01	ci left: 2.649882e-05	ci right 5.290888e-05	k: 35	n:920000
Cons ci ratio: 2.843572e-01	ci left: 1.771918e-04	ci right 2.368991e-04	k: 189	n:920000
KS ci ratio: 4.187379e-02	ci left: 9.238242e-03	ci right 9.634421e-03	k: 8680	n:920000
MFAP1   920000 perm   550 sec   (1674 perm/sec)   p_kst 9.434783e-03   p_cons 2.054348e-04   p_joint 3.804348e-05

Joint ci ratio: 6.533203e-01	ci left: 2.621388e-05	ci right 5.233997e-05	k: 35	n:930000
Cons ci ratio: 2.843575e-01	ci left: 1.752865e-04	ci right 2.343518e-04	k: 189	n:930000
KS ci ratio: 4.166569e-02	ci left: 9.231477e-03	ci right 9.625351e-03	k: 8767	n:930000
MFAP1   930000 perm   559 sec   (1662 perm/sec)   p_kst 9.426882e-03   p_cons 2.032258e-04   p_joint 3.763441e-05

Joint ci ratio: 6.533205e-01	ci left: 2.593501e-05	ci right 5.178316e-05	k: 35	n:940000
Cons ci ratio: 2.836123e-01	ci left: 1.744098e-04	ci right 2.329981e-04	k: 190	n:940000
KS ci ratio: 4.142998e-02	ci left: 9.238548e-03	ci right 9.630441e-03	k: 8867	n:940000
MFAP1   940000 perm   570 sec   (1650 perm/sec)   p_kst 9.432979e-03   p_cons 2.021277e-04   p_joint 3.723404e-05

Joint ci ratio: 6.444311e-01	ci left: 2.654114e-05	ci right 5.246191e-05	k: 36	n:950000
Cons ci ratio: 2.828729e-01	ci left: 1.735518e-04	ci right 2.316727e-04	k: 191	n:950000
KS ci ratio: 4.121910e-02	ci left: 9.236099e-03	ci right 9.625848e-03	k: 8958	n:950000
MFAP1   950000 perm   580 sec   (1639 perm/sec)   p_kst 9.429474e-03   p_cons 2.010526e-04   p_joint 3.789474e-05

Joint ci ratio: 6.358951e-01	ci left: 2.713703e-05	ci right 5.312422e-05	k: 37	n:960000
Cons ci ratio: 2.806884e-01	ci left: 1.746481e-04	ci right 2.326047e-04	k: 194	n:960000
KS ci ratio: 4.101599e-02	ci left: 9.231645e-03	ci right 9.619240e-03	k: 9047	n:960000
MFAP1   960000 perm   590 sec   (1627 perm/sec)   p_kst 9.423958e-03   p_cons 2.020833e-04   p_joint 3.854167e-05

Joint ci ratio: 6.276894e-01	ci left: 2.772289e-05	ci right 5.377071e-05	k: 38	n:970000
Cons ci ratio: 2.792599e-01	ci left: 1.747647e-04	ci right 2.324129e-04	k: 196	n:970000
KS ci ratio: 4.084972e-02	ci left: 9.211979e-03	ci right 9.597144e-03	k: 9121	n:970000
MFAP1   970000 perm   600 sec   (1615 perm/sec)   p_kst 9.403093e-03   p_cons 2.020619e-04   p_joint 3.917526e-05

Joint ci ratio: 6.276896e-01	ci left: 2.744000e-05	ci right 5.322203e-05	k: 38	n:980000
Cons ci ratio: 2.792602e-01	ci left: 1.729814e-04	ci right 2.300414e-04	k: 196	n:980000
KS ci ratio: 4.067206e-02	ci left: 9.198779e-03	ci right 9.581680e-03	k: 9201	n:980000
MFAP1   980000 perm   611 sec   (1604 perm/sec)   p_kst 9.388776e-03   p_cons 2.000000e-04   p_joint 3.877551e-05

Joint ci ratio: 6.276897e-01	ci left: 2.716283e-05	ci right 5.268444e-05	k: 38	n:990000
Cons ci ratio: 2.778534e-01	ci left: 1.731132e-04	ci right 2.298787e-04	k: 198	n:990000
KS ci ratio: 4.046590e-02	ci left: 9.199848e-03	ci right 9.580808e-03	k: 9295	n:990000
MFAP1   990000 perm   622 sec   (1593 perm/sec)   p_kst 9.388889e-03   p_cons 2.000000e-04   p_joint 3.838384e-05

Joint ci ratio: 6.197937e-01	ci left: 2.773295e-05	ci right 5.331390e-05	k: 39	n:1000000
Cons ci ratio: 2.764676e-01	ci left: 1.732431e-04	ci right 2.297186e-04	k: 200	n:1000000
KS ci ratio: 4.027367e-02	ci left: 9.195951e-03	ci right 9.574899e-03	k: 9384	n:1000000
MFAP1   1000000 perm   632 sec   (1582 perm/sec)   p_kst 9.384000e-03   p_cons 2.000000e-04   p_joint 3.900000e-05

Joint ci ratio: 6.197938e-01	ci left: 2.745837e-05	ci right 5.278605e-05	k: 39	n:1010000
Cons ci ratio: 2.764678e-01	ci left: 1.715278e-04	ci right 2.274442e-04	k: 200	n:1010000
KS ci ratio: 4.006281e-02	ci left: 9.201938e-03	ci right 9.579101e-03	k: 9483	n:1010000
MFAP1   1010000 perm   643 sec   (1571 perm/sec)   p_kst 9.389109e-03   p_cons 1.980198e-04   p_joint 3.861386e-05

Joint ci ratio: 6.197940e-01	ci left: 2.718917e-05	ci right 5.226854e-05	k: 39	n:1020000
Cons ci ratio: 2.757828e-01	ci left: 1.707587e-04	ci right 2.262624e-04	k: 201	n:1020000
KS ci ratio: 3.984264e-02	ci left: 9.213637e-03	ci right 9.589157e-03	k: 9588	n:1020000
MFAP1   1020000 perm   654 sec   (1560 perm/sec)   p_kst 9.400000e-03   p_cons 1.970588e-04   p_joint 3.823529e-05

Joint ci ratio: 6.197941e-01	ci left: 2.692519e-05	ci right 5.176108e-05	k: 39	n:1030000
Cons ci ratio: 2.751028e-01	ci left: 1.700046e-04	ci right 2.251035e-04	k: 202	n:1030000
KS ci ratio: 3.967361e-02	ci left: 9.203003e-03	ci right 9.576462e-03	k: 9670	n:1030000
MFAP1   1030000 perm   665 sec   (1550 perm/sec)   p_kst 9.388350e-03   p_cons 1.961165e-04   p_joint 3.786408e-05

Joint ci ratio: 6.197942e-01	ci left: 2.666630e-05	ci right 5.126338e-05	k: 39	n:1040000
Cons ci ratio: 2.737576e-01	ci left: 1.701607e-04	ci right 2.249941e-04	k: 204	n:1040000
KS ci ratio: 3.949240e-02	ci left: 9.199243e-03	ci right 9.570805e-03	k: 9759	n:1040000
MFAP1   1040000 perm   676 sec   (1539 perm/sec)   p_kst 9.383654e-03   p_cons 1.961538e-04   p_joint 3.750000e-05

Joint ci ratio: 5.238178e-01	ci left: 3.946074e-05	ci right 6.818047e-05	k: 55	n:1050000
Cons ci ratio: 2.711250e-01	ci left: 1.720895e-04	ci right 2.269204e-04	k: 208	n:1050000
KS ci ratio: 3.928949e-02	ci left: 9.206875e-03	ci right 9.576792e-03	k: 9860	n:1050000
MFAP1   1050000 perm   687 sec   (1529 perm/sec)   p_kst 9.390476e-03   p_cons 1.980952e-04   p_joint 5.238095e-05

Joint ci ratio: 5.238179e-01	ci left: 3.908846e-05	ci right 6.753726e-05	k: 55	n:1060000
Cons ci ratio: 2.704788e-01	ci left: 1.713454e-04	ci right 2.257869e-04	k: 209	n:1060000
KS ci ratio: 3.912737e-02	ci left: 9.196616e-03	ci right 9.564562e-03	k: 9942	n:1060000
MFAP1   1060000 perm   698 sec   (1519 perm/sec)   p_kst 9.379245e-03   p_cons 1.971698e-04   p_joint 5.188679e-05

Joint ci ratio: 5.192026e-01	ci left: 3.953463e-05	ci right 6.796270e-05	k: 56	n:1070000
Cons ci ratio: 2.698372e-01	ci left: 1.706153e-04	ci right 2.246745e-04	k: 210	n:1070000
KS ci ratio: 3.897901e-02	ci left: 9.181000e-03	ci right 9.546897e-03	k: 10018	n:1070000
MFAP1   1070000 perm   709 sec   (1509 perm/sec)   p_kst 9.362617e-03   p_cons 1.962617e-04   p_joint 5.233645e-05

Joint ci ratio: 5.488966e-01	ci left: 3.436219e-05	ci right 6.103545e-05	k: 50	n:1080000
Cons ci ratio: 2.666954e-01	ci left: 1.733539e-04	ci right 2.275344e-04	k: 215	n:1080000
KS ci ratio: 3.877421e-02	ci left: 9.193186e-03	ci right 9.557601e-03	k: 10124	n:1080000
MFAP1   1080000 perm   720 sec   (1499 perm/sec)   p_kst 9.374074e-03   p_cons 1.990741e-04   p_joint 4.629630e-05

Joint ci ratio: 5.488967e-01	ci left: 3.404694e-05	ci right 6.047549e-05	k: 50	n:1090000
Cons ci ratio: 2.660803e-01	ci left: 1.726196e-04	ci right 2.264255e-04	k: 216	n:1090000
KS ci ratio: 3.859356e-02	ci left: 9.195158e-03	ci right 9.557915e-03	k: 10219	n:1090000
MFAP1   1090000 perm   732 sec   (1490 perm/sec)   p_kst 9.375229e-03   p_cons 1.981651e-04   p_joint 4.587156e-05

Joint ci ratio: 5.384402e-01	ci left: 3.530573e-05	ci right 6.199144e-05	k: 52	n:1100000
Cons ci ratio: 2.630665e-01	ci left: 1.752944e-04	ci right 2.292132e-04	k: 221	n:1100000
KS ci ratio: 3.840413e-02	ci left: 9.202500e-03	ci right 9.563726e-03	k: 10320	n:1100000
MFAP1   1100000 perm   743 sec   (1480 perm/sec)   p_kst 9.381818e-03   p_cons 2.009091e-04   p_joint 4.727273e-05

Joint ci ratio: 5.384403e-01	ci left: 3.498766e-05	ci right 6.143296e-05	k: 52	n:1110000
Cons ci ratio: 2.630667e-01	ci left: 1.737151e-04	ci right 2.271483e-04	k: 221	n:1110000
KS ci ratio: 3.824897e-02	ci left: 9.194545e-03	ci right 9.553968e-03	k: 10404	n:1110000
MFAP1   1110000 perm   755 sec   (1471 perm/sec)   p_kst 9.372973e-03   p_cons 1.990991e-04   p_joint 4.684685e-05

Joint ci ratio: 5.384404e-01	ci left: 3.467527e-05	ci right 6.088445e-05	k: 52	n:1120000
Cons ci ratio: 2.624764e-01	ci left: 1.729981e-04	ci right 2.260717e-04	k: 222	n:1120000
KS ci ratio: 3.805906e-02	ci left: 9.204423e-03	ci right 9.562407e-03	k: 10508	n:1120000
MFAP1   1120000 perm   766 sec   (1461 perm/sec)   p_kst 9.382143e-03   p_cons 1.982143e-04   p_joint 4.642857e-05

Joint ci ratio: 5.334315e-01	ci left: 3.513350e-05	ci right 6.134938e-05	k: 53	n:1130000
Cons ci ratio: 2.601533e-01	ci left: 1.747752e-04	ci right 2.278422e-04	k: 226	n:1130000
KS ci ratio: 3.788817e-02	ci left: 9.206241e-03	ci right 9.562653e-03	k: 10603	n:1130000
MFAP1   1130000 perm   778 sec   (1452 perm/sec)   p_kst 9.383186e-03   p_cons 2.000000e-04   p_joint 4.690265e-05

Joint ci ratio: 5.285597e-01	ci left: 3.558481e-05	ci right 6.180507e-05	k: 54	n:1140000
Cons ci ratio: 2.578908e-01	ci left: 1.765231e-04	ci right 2.295796e-04	k: 230	n:1140000
KS ci ratio: 3.773203e-02	ci left: 9.201947e-03	ci right 9.556693e-03	k: 10691	n:1140000
MFAP1   1140000 perm   790 sec   (1443 perm/sec)   p_kst 9.378070e-03   p_cons 2.017544e-04   p_joint 4.736842e-05

Joint ci ratio: 5.238191e-01	ci left: 3.602935e-05	ci right 6.225178e-05	k: 55	n:1150000
Cons ci ratio: 2.562322e-01	ci left: 1.774287e-04	ci right 2.303597e-04	k: 233	n:1150000
KS ci ratio: 3.757604e-02	ci left: 9.198592e-03	ci right 9.551711e-03	k: 10780	n:1150000
MFAP1   1150000 perm   802 sec   (1434 perm/sec)   p_kst 9.373913e-03   p_cons 2.026087e-04   p_joint 4.782609e-05

Joint ci ratio: 5.238192e-01	ci left: 3.571875e-05	ci right 6.171513e-05	k: 55	n:1160000
Cons ci ratio: 2.551442e-01	ci left: 1.775128e-04	ci right 2.302082e-04	k: 235	n:1160000
KS ci ratio: 3.742545e-02	ci left: 9.193590e-03	ci right 9.545073e-03	k: 10867	n:1160000
MFAP1   1160000 perm   814 sec   (1425 perm/sec)   p_kst 9.368103e-03   p_cons 2.025862e-04   p_joint 4.741379e-05

Joint ci ratio: 5.192038e-01	ci left: 3.615558e-05	ci right 6.215396e-05	k: 56	n:1170000
Cons ci ratio: 2.519610e-01	ci left: 1.807980e-04	ci right 2.336939e-04	k: 241	n:1170000
KS ci ratio: 3.726979e-02	ci left: 9.192064e-03	ci right 9.541995e-03	k: 10958	n:1170000
MFAP1   1170000 perm   826 sec   (1416 perm/sec)   p_kst 9.365812e-03   p_cons 2.059829e-04   p_joint 4.786325e-05

Joint ci ratio: 5.103276e-01	ci left: 3.732379e-05	ci right 6.354060e-05	k: 58	n:1180000
Cons ci ratio: 2.483936e-01	ci left: 1.848262e-04	ci right 2.380168e-04	k: 248	n:1180000
KS ci ratio: 3.711435e-02	ci left: 9.191406e-03	ci right 9.539822e-03	k: 11050	n:1180000
MFAP1   1180000 perm   838 sec   (1408 perm/sec)   p_kst 9.364407e-03   p_cons 2.101695e-04   p_joint 4.915254e-05

Joint ci ratio: 5.103277e-01	ci left: 3.701014e-05	ci right 6.300665e-05	k: 58	n:1190000
Cons ci ratio: 2.464220e-01	ci left: 1.864260e-04	ci right 2.395859e-04	k: 252	n:1190000
KS ci ratio: 3.695248e-02	ci left: 9.194926e-03	ci right 9.541922e-03	k: 11147	n:1190000
MFAP1   1190000 perm   850 sec   (1399 perm/sec)   p_kst 9.367227e-03   p_cons 2.117647e-04   p_joint 4.873950e-05

Joint ci ratio: 5.060570e-01	ci left: 3.742815e-05	ci right 6.342097e-05	k: 59	n:1200000
Cons ci ratio: 2.435506e-01	ci left: 1.895656e-04	ci right 2.428957e-04	k: 258	n:1200000
KS ci ratio: 3.678775e-02	ci left: 9.200867e-03	ci right 9.546507e-03	k: 11247	n:1200000
MFAP1   1200000 perm   863 sec   (1391 perm/sec)   p_kst 9.372500e-03   p_cons 2.150000e-04   p_joint 4.916667e-05

Joint ci ratio: 5.060571e-01	ci left: 3.711882e-05	ci right 6.289683e-05	k: 59	n:1210000
Cons ci ratio: 2.421521e-01	ci left: 1.903274e-04	ci right 2.435182e-04	k: 261	n:1210000
KS ci ratio: 3.660242e-02	ci left: 9.218179e-03	ci right 9.562688e-03	k: 11361	n:1210000
MFAP1   1210000 perm   875 sec   (1383 perm/sec)   p_kst 9.389256e-03   p_cons 2.157025e-04   p_joint 4.876033e-05

Joint ci ratio: 5.060572e-01	ci left: 3.681457e-05	ci right 6.238129e-05	k: 59	n:1220000
Cons ci ratio: 2.421523e-01	ci left: 1.887673e-04	ci right 2.415221e-04	k: 261	n:1220000
KS ci ratio: 3.646319e-02	ci left: 9.213280e-03	ci right 9.556269e-03	k: 11448	n:1220000
MFAP1   1220000 perm   888 sec   (1374 perm/sec)   p_kst 9.383607e-03   p_cons 2.139344e-04   p_joint 4.836066e-05

Joint ci ratio: 5.018919e-01	ci left: 3.722485e-05	ci right 6.278972e-05	k: 60	n:1230000
Cons ci ratio: 2.412333e-01	ci left: 1.887602e-04	ci right 2.412828e-04	k: 263	n:1230000
KS ci ratio: 3.633190e-02	ci left: 9.205240e-03	ci right 9.546670e-03	k: 11531	n:1230000
MFAP1   1230000 perm   900 sec   (1366 perm/sec)   p_kst 9.374797e-03   p_cons 2.138211e-04   p_joint 4.878049e-05

Joint ci ratio: 5.488983e-01	ci left: 2.992834e-05	ci right 5.315995e-05	k: 50	n:1240000
Cons ci ratio: 2.389806e-01	ci left: 1.910276e-04	ci right 2.436113e-04	k: 268	n:1240000
KS ci ratio: 3.618315e-02	ci left: 9.206922e-03	ci right 9.546988e-03	k: 11626	n:1240000
MFAP1   1240000 perm   913 sec   (1358 perm/sec)   p_kst 9.375806e-03   p_cons 2.161290e-04   p_joint 4.032258e-05

Joint ci ratio: 5.488984e-01	ci left: 2.968891e-05	ci right 5.273468e-05	k: 50	n:1250000
Cons ci ratio: 2.389808e-01	ci left: 1.894994e-04	ci right 2.416625e-04	k: 268	n:1250000
KS ci ratio: 3.603311e-02	ci left: 9.210167e-03	ci right 9.548912e-03	k: 11723	n:1250000
MFAP1   1250000 perm   926 sec   (1350 perm/sec)   p_kst 9.378400e-03   p_cons 2.144000e-04   p_joint 4.000000e-05

Joint ci ratio: 5.488985e-01	ci left: 2.945328e-05	ci right 5.231615e-05	k: 50	n:1260000
Cons ci ratio: 2.380973e-01	ci left: 1.894879e-04	ci right 2.414265e-04	k: 270	n:1260000
KS ci ratio: 3.587267e-02	ci left: 9.219655e-03	ci right 9.557209e-03	k: 11828	n:1260000
MFAP1   1260000 perm   939 sec   (1342 perm/sec)   p_kst 9.387302e-03   p_cons 2.142857e-04   p_joint 3.968254e-05

Joint ci ratio: 5.488986e-01	ci left: 2.922137e-05	ci right 5.190422e-05	k: 50	n:1270000
Cons ci ratio: 2.376594e-01	ci left: 1.887363e-04	ci right 2.403598e-04	k: 271	n:1270000
KS ci ratio: 3.572946e-02	ci left: 9.221193e-03	ci right 9.557428e-03	k: 11923	n:1270000
MFAP1   1270000 perm   951 sec   (1335 perm/sec)   p_kst 9.388189e-03   p_cons 2.133858e-04   p_joint 3.937008e-05

Joint ci ratio: 5.435949e-01	ci left: 2.966643e-05	ci right 5.238684e-05	k: 51	n:1280000
Cons ci ratio: 2.367904e-01	ci left: 1.887314e-04	ci right 2.401372e-04	k: 273	n:1280000
KS ci ratio: 3.559095e-02	ci left: 9.221161e-03	ci right 9.556064e-03	k: 12016	n:1280000
MFAP1   1280000 perm   964 sec   (1327 perm/sec)   p_kst 9.387500e-03   p_cons 2.132813e-04   p_joint 3.984375e-05

Joint ci ratio: 5.435950e-01	ci left: 2.943645e-05	ci right 5.198075e-05	k: 51	n:1290000
Cons ci ratio: 2.334070e-01	ci left: 1.931048e-04	ci right 2.448417e-04	k: 281	n:1290000
KS ci ratio: 3.546439e-02	ci left: 9.215753e-03	ci right 9.549246e-03	k: 12102	n:1290000
MFAP1   1290000 perm   978 sec   (1320 perm/sec)   p_kst 9.381395e-03   p_cons 2.178295e-04   p_joint 3.953488e-05

Joint ci ratio: 5.334331e-01	ci left: 3.053910e-05	ci right 5.332682e-05	k: 53	n:1300000
Cons ci ratio: 2.313647e-01	ci left: 1.952416e-04	ci right 2.470279e-04	k: 286	n:1300000
KS ci ratio: 3.532308e-02	ci left: 9.218818e-03	ci right 9.551065e-03	k: 12199	n:1300000
MFAP1   1300000 perm   992 sec   (1311 perm/sec)   p_kst 9.383846e-03   p_cons 2.200000e-04   p_joint 4.076923e-05

Joint ci ratio: 5.238206e-01	ci left: 3.162880e-05	ci right 5.464855e-05	k: 55	n:1310000
Cons ci ratio: 2.297689e-01	ci left: 1.966283e-04	ci right 2.483717e-04	k: 290	n:1310000
KS ci ratio: 3.519500e-02	ci left: 9.215785e-03	ci right 9.546695e-03	k: 12288	n:1310000
MFAP1   1310000 perm   1005 sec   (1303 perm/sec)   p_kst 9.380153e-03   p_cons 2.213740e-04   p_joint 4.198473e-05

Joint ci ratio: 5.192053e-01	ci left: 3.204697e-05	ci right 5.509106e-05	k: 56	n:1320000
Cons ci ratio: 2.289833e-01	ci left: 1.965668e-04	ci right 2.480922e-04	k: 292	n:1320000
KS ci ratio: 3.505830e-02	ci left: 9.218057e-03	ci right 9.547737e-03	k: 12384	n:1320000
MFAP1   1320000 perm   1018 sec   (1296 perm/sec)   p_kst 9.381818e-03   p_cons 2.212121e-04   p_joint 4.242424e-05

Joint ci ratio: 5.192054e-01	ci left: 3.180602e-05	ci right 5.467684e-05	k: 56	n:1330000
Cons ci ratio: 2.289835e-01	ci left: 1.950889e-04	ci right 2.462268e-04	k: 292	n:1330000
KS ci ratio: 3.493166e-02	ci left: 9.215826e-03	ci right 9.544211e-03	k: 12474	n:1330000
MFAP1   1330000 perm   1032 sec   (1289 perm/sec)   p_kst 9.378947e-03   p_cons 2.195489e-04   p_joint 4.210526e-05

Joint ci ratio: 5.192054e-01	ci left: 3.156866e-05	ci right 5.426881e-05	k: 56	n:1340000
Cons ci ratio: 2.282060e-01	ci left: 1.950400e-04	ci right 2.459672e-04	k: 294	n:1340000
KS ci ratio: 3.480219e-02	ci left: 9.215849e-03	ci right 9.542993e-03	k: 12567	n:1340000
MFAP1   1340000 perm   1045 sec   (1282 perm/sec)   p_kst 9.378358e-03   p_cons 2.194030e-04   p_joint 4.179104e-05

Joint ci ratio: 5.147100e-01	ci left: 3.197885e-05	ci right 5.470344e-05	k: 57	n:1350000
Cons ci ratio: 2.274364e-01	ci left: 1.949922e-04	ci right 2.457111e-04	k: 296	n:1350000
KS ci ratio: 3.469213e-02	ci left: 9.206327e-03	ci right 9.532080e-03	k: 12647	n:1350000
MFAP1   1350000 perm   1059 sec   (1275 perm/sec)   p_kst 9.368148e-03   p_cons 2.192593e-04   p_joint 4.222222e-05

Joint ci ratio: 5.147101e-01	ci left: 3.174371e-05	ci right 5.430122e-05	k: 57	n:1360000
Cons ci ratio: 2.262963e-01	ci left: 1.956390e-04	ci right 2.462354e-04	k: 299	n:1360000
KS ci ratio: 3.456940e-02	ci left: 9.204237e-03	ci right 9.528740e-03	k: 12737	n:1360000
MFAP1   1360000 perm   1073 sec   (1268 perm/sec)   p_kst 9.365441e-03   p_cons 2.198529e-04   p_joint 4.191176e-05

Joint ci ratio: 4.862044e-01	ci left: 3.597668e-05	ci right 5.965405e-05	k: 64	n:1370000
Cons ci ratio: 2.259201e-01	ci left: 1.948996e-04	ci right 2.452093e-04	k: 300	n:1370000
KS ci ratio: 3.443984e-02	ci left: 9.206521e-03	ci right 9.529865e-03	k: 12833	n:1370000
MFAP1   1370000 perm   1087 sec   (1261 perm/sec)   p_kst 9.367153e-03   p_cons 2.189781e-04   p_joint 4.671533e-05

Joint ci ratio: 4.862045e-01	ci left: 3.571597e-05	ci right 5.922177e-05	k: 64	n:1380000
Cons ci ratio: 2.255459e-01	ci left: 1.941709e-04	ci right 2.441980e-04	k: 301	n:1380000
KS ci ratio: 3.430904e-02	ci left: 9.210212e-03	ci right 9.532432e-03	k: 12931	n:1380000
MFAP1   1380000 perm   1101 sec   (1254 perm/sec)   p_kst 9.370290e-03   p_cons 2.181159e-04   p_joint 4.637681e-05

Joint ci ratio: 4.862046e-01	ci left: 3.545902e-05	ci right 5.879572e-05	k: 64	n:1390000
Cons ci ratio: 2.244338e-01	ci left: 1.948106e-04	ci right 2.447208e-04	k: 304	n:1390000
KS ci ratio: 3.420358e-02	ci left: 9.201011e-03	ci right 9.521901e-03	k: 13011	n:1390000
MFAP1   1390000 perm   1115 sec   (1247 perm/sec)   p_kst 9.360432e-03   p_cons 2.187050e-04   p_joint 4.604317e-05

Joint ci ratio: 4.862047e-01	ci left: 3.520574e-05	ci right 5.837575e-05	k: 64	n:1400000
Cons ci ratio: 2.244340e-01	ci left: 1.934191e-04	ci right 2.429729e-04	k: 304	n:1400000
KS ci ratio: 3.410961e-02	ci left: 9.186278e-03	ci right 9.505757e-03	k: 13083	n:1400000
MFAP1   1400000 perm   1129 sec   (1240 perm/sec)   p_kst 9.345000e-03   p_cons 2.171429e-04   p_joint 4.571429e-05

Joint ci ratio: 4.825072e-01	ci left: 3.557863e-05	ci right 5.875696e-05	k: 65	n:1410000
Cons ci ratio: 2.226165e-01	ci left: 1.953949e-04	ci right 2.449939e-04	k: 309	n:1410000
KS ci ratio: 3.399033e-02	ci left: 9.185820e-03	ci right 9.504144e-03	k: 13175	n:1410000
MFAP1   1410000 perm   1144 sec   (1233 perm/sec)   p_kst 9.343972e-03   p_cons 2.191489e-04   p_joint 4.609929e-05

Joint ci ratio: 4.825073e-01	ci left: 3.532808e-05	ci right 5.834318e-05	k: 65	n:1420000
Cons ci ratio: 2.219018e-01	ci left: 1.953490e-04	ci right 2.447554e-04	k: 311	n:1420000
KS ci ratio: 3.387230e-02	ci left: 9.185370e-03	ci right 9.502552e-03	k: 13267	n:1420000
MFAP1   1420000 perm   1158 sec   (1226 perm/sec)   p_kst 9.342958e-03   p_cons 2.190141e-04   p_joint 4.577465e-05

Joint ci ratio: 4.825073e-01	ci left: 3.508103e-05	ci right 5.793519e-05	k: 65	n:1430000
Cons ci ratio: 2.211940e-01	ci left: 1.953039e-04	ci right 2.445199e-04	k: 313	n:1430000
KS ci ratio: 3.375549e-02	ci left: 9.184928e-03	ci right 9.500980e-03	k: 13359	n:1430000
MFAP1   1430000 perm   1172 sec   (1220 perm/sec)   p_kst 9.341958e-03   p_cons 2.188811e-04   p_joint 4.545455e-05

Joint ci ratio: 4.825074e-01	ci left: 3.483741e-05	ci right 5.753286e-05	k: 65	n:1440000
Cons ci ratio: 2.208427e-01	ci left: 1.946036e-04	ci right 2.435546e-04	k: 314	n:1440000
KS ci ratio: 3.365630e-02	ci left: 9.175542e-03	ci right 9.490325e-03	k: 13438	n:1440000
MFAP1   1440000 perm   1187 sec   (1213 perm/sec)   p_kst 9.331944e-03   p_cons 2.180556e-04   p_joint 4.513889e-05

Joint ci ratio: 4.825075e-01	ci left: 3.459715e-05	ci right 5.713609e-05	k: 65	n:1450000
Cons ci ratio: 2.204931e-01	ci left: 1.939130e-04	ci right 2.426027e-04	k: 315	n:1450000
KS ci ratio: 3.354170e-02	ci left: 9.175178e-03	ci right 9.488856e-03	k: 13530	n:1450000
MFAP1   1450000 perm   1202 sec   (1206 perm/sec)   p_kst 9.331034e-03   p_cons 2.172414e-04   p_joint 4.482759e-05

Joint ci ratio: 4.825076e-01	ci left: 3.436018e-05	ci right 5.674475e-05	k: 65	n:1460000
Cons ci ratio: 2.194538e-01	ci left: 1.945265e-04	ci right 2.431088e-04	k: 318	n:1460000
KS ci ratio: 3.343570e-02	ci left: 9.170745e-03	ci right 9.483261e-03	k: 13616	n:1460000
MFAP1   1460000 perm   1217 sec   (1200 perm/sec)   p_kst 9.326027e-03   p_cons 2.178082e-04   p_joint 4.452055e-05

Joint ci ratio: 4.825076e-01	ci left: 3.412644e-05	ci right 5.635873e-05	k: 65	n:1470000
Cons ci ratio: 2.191107e-01	ci left: 1.938460e-04	ci right 2.421726e-04	k: 319	n:1470000
KS ci ratio: 3.331843e-02	ci left: 9.173120e-03	ci right 9.484600e-03	k: 13712	n:1470000
MFAP1   1470000 perm   1232 sec   (1193 perm/sec)   p_kst 9.327891e-03   p_cons 2.170068e-04   p_joint 4.421769e-05

Joint ci ratio: 4.825077e-01	ci left: 3.389585e-05	ci right 5.597793e-05	k: 65	n:1480000
Cons ci ratio: 2.167525e-01	ci left: 1.970079e-04	ci right 2.455238e-04	k: 326	n:1480000
KS ci ratio: 3.318783e-02	ci left: 9.183507e-03	ci right 9.494094e-03	k: 13820	n:1480000
MFAP1   1480000 perm   1247 sec   (1187 perm/sec)   p_kst 9.337838e-03   p_cons 2.202703e-04   p_joint 4.391892e-05

Joint ci ratio: 4.825078e-01	ci left: 3.366836e-05	ci right 5.560224e-05	k: 65	n:1490000
Cons ci ratio: 2.160927e-01	ci left: 1.969552e-04	ci right 2.452909e-04	k: 328	n:1490000
KS ci ratio: 3.307913e-02	ci left: 9.182440e-03	ci right 9.491955e-03	k: 13911	n:1490000
MFAP1   1490000 perm   1262 sec   (1181 perm/sec)   p_kst 9.336242e-03   p_cons 2.201342e-04   p_joint 4.362416e-05

Joint ci ratio: 4.788934e-01	ci left: 3.402976e-05	ci right 5.597845e-05	k: 66	n:1500000
Cons ci ratio: 2.154388e-01	ci left: 1.969035e-04	ci right 2.450609e-04	k: 330	n:1500000
KS ci ratio: 3.297507e-02	ci left: 9.179406e-03	ci right 9.487827e-03	k: 13999	n:1500000
MFAP1   1500000 perm   1277 sec   (1175 perm/sec)   p_kst 9.332667e-03   p_cons 2.200000e-04   p_joint 4.400000e-05

Joint ci ratio: 4.788934e-01	ci left: 3.380439e-05	ci right 5.560774e-05	k: 66	n:1510000
Cons ci ratio: 2.144691e-01	ci left: 1.974793e-04	ci right 2.455315e-04	k: 333	n:1510000
KS ci ratio: 3.285315e-02	ci left: 9.186923e-03	ci right 9.494434e-03	k: 14103	n:1510000
MFAP1   1510000 perm   1292 sec   (1169 perm/sec)   p_kst 9.339735e-03   p_cons 2.205298e-04   p_joint 4.370861e-05

Joint ci ratio: 4.788935e-01	ci left: 3.358199e-05	ci right 5.524190e-05	k: 66	n:1520000
Cons ci ratio: 2.138298e-01	ci left: 1.974253e-04	ci right 2.453024e-04	k: 335	n:1520000
KS ci ratio: 3.274537e-02	ci left: 9.187165e-03	ci right 9.493656e-03	k: 14196	n:1520000
MFAP1   1520000 perm   1307 sec   (1163 perm/sec)   p_kst 9.339474e-03   p_cons 2.203947e-04   p_joint 4.342105e-05

Joint ci ratio: 4.788936e-01	ci left: 3.336250e-05	ci right 5.488084e-05	k: 66	n:1530000
Cons ci ratio: 2.131963e-01	ci left: 1.973722e-04	ci right 2.450761e-04	k: 337	n:1530000
KS ci ratio: 3.262597e-02	ci left: 9.194537e-03	ci right 9.500135e-03	k: 14300	n:1530000
MFAP1   1530000 perm   1322 sec   (1158 perm/sec)   p_kst 9.346405e-03   p_cons 2.202614e-04   p_joint 4.313725e-05

Joint ci ratio: 4.753592e-01	ci left: 3.371709e-05	ci right 5.525138e-05	k: 67	n:1540000
Cons ci ratio: 2.128817e-01	ci left: 1.967053e-04	ci right 2.441687e-04	k: 338	n:1540000
KS ci ratio: 3.250332e-02	ci left: 9.204392e-03	ci right 9.509146e-03	k: 14408	n:1540000
MFAP1   1540000 perm   1337 sec   (1152 perm/sec)   p_kst 9.355844e-03   p_cons 2.194805e-04   p_joint 4.350649e-05

Joint ci ratio: 4.753592e-01	ci left: 3.349956e-05	ci right 5.489493e-05	k: 67	n:1550000
Cons ci ratio: 2.116366e-01	ci left: 1.978797e-04	ci right 2.453110e-04	k: 342	n:1550000
KS ci ratio: 3.242151e-02	ci left: 9.191722e-03	ci right 9.495276e-03	k: 14481	n:1550000
MFAP1   1550000 perm   1352 sec   (1146 perm/sec)   p_kst 9.342581e-03   p_cons 2.206452e-04   p_joint 4.322581e-05

Joint ci ratio: 4.719020e-01	ci left: 3.384930e-05	ci right 5.526006e-05	k: 68	n:1560000
Cons ci ratio: 2.110223e-01	ci left: 1.978255e-04	ci right 2.450883e-04	k: 344	n:1560000
KS ci ratio: 3.232575e-02	ci left: 9.187483e-03	ci right 9.489984e-03	k: 14567	n:1560000
MFAP1   1560000 perm   1368 sec   (1140 perm/sec)   p_kst 9.337821e-03   p_cons 2.205128e-04   p_joint 4.358974e-05

Joint ci ratio: 4.719020e-01	ci left: 3.363369e-05	ci right 5.490809e-05	k: 68	n:1570000
Cons ci ratio: 2.104133e-01	ci left: 1.977721e-04	ci right 2.448682e-04	k: 346	n:1570000
KS ci ratio: 3.223527e-02	ci left: 9.180771e-03	ci right 9.482190e-03	k: 14649	n:1570000
MFAP1   1570000 perm   1384 sec   (1135 perm/sec)   p_kst 9.330573e-03   p_cons 2.203822e-04   p_joint 4.331210e-05

Joint ci ratio: 4.719021e-01	ci left: 3.342082e-05	ci right 5.456057e-05	k: 68	n:1580000
Cons ci ratio: 2.104134e-01	ci left: 1.965203e-04	ci right 2.433184e-04	k: 346	n:1580000
KS ci ratio: 3.213785e-02	ci left: 9.178541e-03	ci right 9.478958e-03	k: 14738	n:1580000
MFAP1   1580000 perm   1399 sec   (1129 perm/sec)   p_kst 9.327848e-03   p_cons 2.189873e-04   p_joint 4.303797e-05

Joint ci ratio: 4.652079e-01	ci left: 3.431993e-05	ci right 5.562282e-05	k: 70	n:1590000
Cons ci ratio: 2.086173e-01	ci left: 1.988600e-04	ci right 2.457594e-04	k: 352	n:1590000
KS ci ratio: 3.202713e-02	ci left: 9.184451e-03	ci right 9.484007e-03	k: 14840	n:1590000
MFAP1   1590000 perm   1415 sec   (1124 perm/sec)   p_kst 9.333333e-03   p_cons 2.213836e-04   p_joint 4.402516e-05

Joint ci ratio: 4.652079e-01	ci left: 3.410543e-05	ci right 5.527517e-05	k: 70	n:1600000
Cons ci ratio: 2.083225e-01	ci left: 1.982095e-04	ci right 2.448810e-04	k: 353	n:1600000
KS ci ratio: 3.197158e-02	ci left: 9.159286e-03	ci right 9.457494e-03	k: 14892	n:1600000
MFAP1   1600000 perm   1431 sec   (1118 perm/sec)   p_kst 9.307500e-03   p_cons 2.206250e-04   p_joint 4.375000e-05

Joint ci ratio: 4.652080e-01	ci left: 3.389359e-05	ci right 5.493185e-05	k: 70	n:1610000
Cons ci ratio: 2.077365e-01	ci left: 1.981559e-04	ci right 2.446668e-04	k: 355	n:1610000
KS ci ratio: 3.187867e-02	ci left: 9.156002e-03	ci right 9.453221e-03	k: 14979	n:1610000
MFAP1   1610000 perm   1447 sec   (1113 perm/sec)   p_kst 9.303727e-03   p_cons 2.204969e-04   p_joint 4.347826e-05

Joint ci ratio: 4.619660e-01	ci left: 3.422953e-05	ci right 5.528168e-05	k: 71	n:1620000
Cons ci ratio: 2.074455e-01	ci left: 1.975179e-04	ci right 2.438059e-04	k: 356	n:1620000
KS ci ratio: 3.178656e-02	ci left: 9.152759e-03	ci right 9.448999e-03	k: 15066	n:1620000
MFAP1   1620000 perm   1462 sec   (1108 perm/sec)   p_kst 9.300000e-03   p_cons 2.197531e-04   p_joint 4.382716e-05

Joint ci ratio: 4.619661e-01	ci left: 3.401953e-05	ci right 5.494253e-05	k: 71	n:1630000
Cons ci ratio: 2.068668e-01	ci left: 1.974695e-04	ci right 2.436007e-04	k: 358	n:1630000
KS ci ratio: 3.170263e-02	ci left: 9.145297e-03	ci right 9.440500e-03	k: 15146	n:1630000
MFAP1   1630000 perm   1479 sec   (1102 perm/sec)   p_kst 9.292025e-03   p_cons 2.196319e-04   p_joint 4.355828e-05

Joint ci ratio: 4.619661e-01	ci left: 3.381209e-05	ci right 5.460752e-05	k: 71	n:1640000
Cons ci ratio: 2.068670e-01	ci left: 1.962654e-04	ci right 2.421154e-04	k: 358	n:1640000
KS ci ratio: 3.159111e-02	ci left: 9.154261e-03	ci right 9.448695e-03	k: 15253	n:1640000
MFAP1   1640000 perm   1495 sec   (1097 perm/sec)   p_kst 9.300610e-03   p_cons 2.182927e-04   p_joint 4.329268e-05

Joint ci ratio: 4.587910e-01	ci left: 3.414292e-05	ci right 5.495247e-05	k: 72	n:1650000
Cons ci ratio: 2.060080e-01	ci left: 1.968001e-04	ci right 2.425600e-04	k: 361	n:1650000
KS ci ratio: 3.148800e-02	ci left: 9.158909e-03	ci right 9.452514e-03	k: 15353	n:1650000
MFAP1   1650000 perm   1511 sec   (1092 perm/sec)   p_kst 9.304848e-03   p_cons 2.187879e-04   p_joint 4.363636e-05

Joint ci ratio: 4.587911e-01	ci left: 3.393724e-05	ci right 5.462143e-05	k: 72	n:1660000
Cons ci ratio: 2.051596e-01	ci left: 1.973288e-04	ci right 2.429989e-04	k: 364	n:1660000
KS ci ratio: 3.138999e-02	ci left: 9.161112e-03	ci right 9.453857e-03	k: 15449	n:1660000
MFAP1   1660000 perm   1528 sec   (1087 perm/sec)   p_kst 9.306627e-03   p_cons 2.192771e-04   p_joint 4.337349e-05

Joint ci ratio: 4.556805e-01	ci left: 3.426383e-05	ci right 5.496169e-05	k: 73	n:1670000
Cons ci ratio: 2.045998e-01	ci left: 1.972833e-04	ci right 2.428028e-04	k: 366	n:1670000
KS ci ratio: 3.129899e-02	ci left: 9.159725e-03	ci right 9.451561e-03	k: 15539	n:1670000
MFAP1   1670000 perm   1544 sec   (1082 perm/sec)   p_kst 9.304790e-03   p_cons 2.191617e-04   p_joint 4.371257e-05

Joint ci ratio: 4.526324e-01	ci left: 3.458701e-05	ci right 5.529744e-05	k: 74	n:1680000
Cons ci ratio: 2.034937e-01	ci left: 1.983683e-04	ci right 2.438600e-04	k: 370	n:1680000
KS ci ratio: 3.122189e-02	ci left: 9.150677e-03	ci right 9.441494e-03	k: 15616	n:1680000
MFAP1   1680000 perm   1561 sec   (1076 perm/sec)   p_kst 9.295238e-03   p_cons 2.202381e-04   p_joint 4.404762e-05

Joint ci ratio: 4.526324e-01	ci left: 3.438235e-05	ci right 5.497024e-05	k: 74	n:1690000
Cons ci ratio: 2.034939e-01	ci left: 1.971945e-04	ci right 2.424170e-04	k: 370	n:1690000
KS ci ratio: 3.113434e-02	ci left: 9.148196e-03	ci right 9.438105e-03	k: 15704	n:1690000
MFAP1   1690000 perm   1577 sec   (1071 perm/sec)   p_kst 9.292308e-03   p_cons 2.189349e-04   p_joint 4.378698e-05

Joint ci ratio: 4.526325e-01	ci left: 3.418010e-05	ci right 5.464689e-05	k: 74	n:1700000
Cons ci ratio: 2.026760e-01	ci left: 1.977095e-04	ci right 2.428454e-04	k: 373	n:1700000
KS ci ratio: 3.104950e-02	ci left: 9.144578e-03	ci right 9.433568e-03	k: 15790	n:1700000
MFAP1   1700000 perm   1594 sec   (1066 perm/sec)   p_kst 9.288235e-03   p_cons 2.194118e-04   p_joint 4.352941e-05

Joint ci ratio: 4.526326e-01	ci left: 3.398022e-05	ci right 5.432732e-05	k: 74	n:1710000
Cons ci ratio: 2.021363e-01	ci left: 1.976637e-04	ci right 2.426540e-04	k: 375	n:1710000
KS ci ratio: 3.094962e-02	ci left: 9.150288e-03	ci right 9.438512e-03	k: 15892	n:1710000
MFAP1   1710000 perm   1611 sec   (1061 perm/sec)   p_kst 9.293567e-03   p_cons 2.192982e-04   p_joint 4.327485e-05

Joint ci ratio: 4.526326e-01	ci left: 3.378266e-05	ci right 5.401146e-05	k: 74	n:1720000
Cons ci ratio: 2.016008e-01	ci left: 1.976185e-04	ci right 2.424647e-04	k: 377	n:1720000
KS ci ratio: 3.084583e-02	ci left: 9.158818e-03	ci right 9.446326e-03	k: 15999	n:1720000
MFAP1   1720000 perm   1628 sec   (1056 perm/sec)   p_kst 9.301744e-03   p_cons 2.191860e-04   p_joint 4.302326e-05

Joint ci ratio: 4.526327e-01	ci left: 3.358738e-05	ci right 5.369926e-05	k: 74	n:1730000
Cons ci ratio: 2.016010e-01	ci left: 1.964762e-04	ci right 2.410632e-04	k: 377	n:1730000
KS ci ratio: 3.075561e-02	ci left: 9.159794e-03	ci right 9.446477e-03	k: 16093	n:1730000
MFAP1   1730000 perm   1645 sec   (1052 perm/sec)   p_kst 9.302312e-03   p_cons 2.179191e-04   p_joint 4.277457e-05

Joint ci ratio: 4.526327e-01	ci left: 3.339435e-05	ci right 5.339064e-05	k: 74	n:1740000
Cons ci ratio: 2.013349e-01	ci left: 1.958927e-04	ci right 2.402815e-04	k: 378	n:1740000
KS ci ratio: 3.066236e-02	ci left: 9.163041e-03	ci right 9.448941e-03	k: 16191	n:1740000
MFAP1   1740000 perm   1662 sec   (1047 perm/sec)   p_kst 9.305172e-03   p_cons 2.172414e-04   p_joint 4.252874e-05

Joint ci ratio: 4.496449e-01	ci left: 3.371001e-05	ci right 5.372151e-05	k: 75	n:1750000
Cons ci ratio: 2.002807e-01	ci left: 1.969441e-04	ci right 2.413089e-04	k: 382	n:1750000
KS ci ratio: 3.057373e-02	ci left: 9.163984e-03	ci right 9.449072e-03	k: 16285	n:1750000
MFAP1   1750000 perm   1679 sec   (1042 perm/sec)   p_kst 9.305714e-03   p_cons 2.182857e-04   p_joint 4.285714e-05

Joint ci ratio: 4.496450e-01	ci left: 3.351847e-05	ci right 5.341627e-05	k: 75	n:1760000
Cons ci ratio: 2.002808e-01	ci left: 1.958251e-04	ci right 2.399378e-04	k: 382	n:1760000
KS ci ratio: 3.048587e-02	ci left: 9.164917e-03	ci right 9.449201e-03	k: 16379	n:1760000
MFAP1   1760000 perm   1697 sec   (1037 perm/sec)   p_kst 9.306250e-03   p_cons 2.170455e-04   p_joint 4.261364e-05

Joint ci ratio: 4.467156e-01	ci left: 3.383029e-05	ci right 5.374284e-05	k: 76	n:1770000
Cons ci ratio: 1.989860e-01	ci left: 1.974024e-04	ci right 2.415481e-04	k: 387	n:1770000
KS ci ratio: 3.040621e-02	ci left: 9.161356e-03	ci right 9.444773e-03	k: 16465	n:1770000
MFAP1   1770000 perm   1714 sec   (1032 perm/sec)   p_kst 9.302260e-03   p_cons 2.186441e-04   p_joint 4.293785e-05

Joint ci ratio: 4.467157e-01	ci left: 3.364023e-05	ci right 5.344091e-05	k: 76	n:1780000
Cons ci ratio: 1.987301e-01	ci left: 1.968272e-04	ci right 2.407808e-04	k: 388	n:1780000
KS ci ratio: 3.032071e-02	ci left: 9.161738e-03	ci right 9.444356e-03	k: 16558	n:1780000
MFAP1   1780000 perm   1732 sec   (1028 perm/sec)   p_kst 9.302247e-03   p_cons 2.179775e-04   p_joint 4.269663e-05

Joint ci ratio: 4.467157e-01	ci left: 3.345230e-05	ci right 5.314236e-05	k: 76	n:1790000
Cons ci ratio: 1.987302e-01	ci left: 1.957276e-04	ci right 2.394357e-04	k: 388	n:1790000
KS ci ratio: 3.022951e-02	ci left: 9.165998e-03	ci right 9.447883e-03	k: 16658	n:1790000
MFAP1   1790000 perm   1750 sec   (1023 perm/sec)   p_kst 9.306145e-03   p_cons 2.167598e-04   p_joint 4.245810e-05

Joint ci ratio: 4.467158e-01	ci left: 3.326645e-05	ci right 5.284713e-05	k: 76	n:1800000
Cons ci ratio: 1.982213e-01	ci left: 1.956962e-04	ci right 2.392718e-04	k: 390	n:1800000
KS ci ratio: 3.014821e-02	ci left: 9.164699e-03	ci right 9.445772e-03	k: 16748	n:1800000
MFAP1   1800000 perm   1767 sec   (1018 perm/sec)   p_kst 9.304444e-03   p_cons 2.166667e-04   p_joint 4.222222e-05

Joint ci ratio: 4.382595e-01	ci left: 3.455542e-05	ci right 5.439616e-05	k: 79	n:1810000
Cons ci ratio: 1.969658e-01	ci left: 1.972408e-04	ci right 2.408487e-04	k: 395	n:1810000
KS ci ratio: 3.006936e-02	ci left: 9.162318e-03	ci right 9.442571e-03	k: 16836	n:1810000
MFAP1   1810000 perm   1785 sec   (1014 perm/sec)   p_kst 9.301657e-03   p_cons 2.182320e-04   p_joint 4.364641e-05

Joint ci ratio: 4.382596e-01	ci left: 3.436555e-05	ci right 5.409728e-05	k: 79	n:1820000
Cons ci ratio: 1.967176e-01	ci left: 1.966794e-04	ci right 2.401019e-04	k: 396	n:1820000
KS ci ratio: 2.998398e-02	ci left: 9.164327e-03	ci right 9.443832e-03	k: 16932	n:1820000
MFAP1   1820000 perm   1803 sec   (1009 perm/sec)   p_kst 9.303297e-03   p_cons 2.175824e-04   p_joint 4.340659e-05

Joint ci ratio: 4.382596e-01	ci left: 3.417776e-05	ci right 5.380167e-05	k: 79	n:1830000
Cons ci ratio: 1.962240e-01	ci left: 1.966438e-04	ci right 2.399364e-04	k: 398	n:1830000
KS ci ratio: 2.990463e-02	ci left: 9.163060e-03	ci right 9.441775e-03	k: 17022	n:1830000
MFAP1   1830000 perm   1821 sec   (1005 perm/sec)   p_kst 9.301639e-03   p_cons 2.174863e-04   p_joint 4.316940e-05

Joint ci ratio: 4.382597e-01	ci left: 3.399201e-05	ci right 5.350927e-05	k: 79	n:1840000
Cons ci ratio: 1.957341e-01	ci left: 1.966087e-04	ci right 2.397727e-04	k: 400	n:1840000
KS ci ratio: 2.984353e-02	ci left: 9.151020e-03	ci right 9.428789e-03	k: 17092	n:1840000
MFAP1   1840000 perm   1839 sec   (1001 perm/sec)   p_kst 9.289130e-03   p_cons 2.173913e-04   p_joint 4.293478e-05

Joint ci ratio: 4.328819e-01	ci left: 3.477079e-05	ci right 5.441896e-05	k: 81	n:1850000
Cons ci ratio: 1.952478e-01	ci left: 1.965741e-04	ci right 2.396105e-04	k: 402	n:1850000
KS ci ratio: 2.976267e-02	ci left: 9.151450e-03	ci right 9.428467e-03	k: 17185	n:1850000
MFAP1   1850000 perm   1857 sec   (996 perm/sec)   p_kst 9.289189e-03   p_cons 2.172973e-04   p_joint 4.378378e-05

Joint ci ratio: 4.328819e-01	ci left: 3.458385e-05	ci right 5.412638e-05	k: 81	n:1860000
Cons ci ratio: 1.950061e-01	ci left: 1.960286e-04	ci right 2.388862e-04	k: 403	n:1860000
KS ci ratio: 2.967986e-02	ci left: 9.153479e-03	ci right 9.429773e-03	k: 17281	n:1860000
MFAP1   1860000 perm   1875 sec   (992 perm/sec)   p_kst 9.290860e-03   p_cons 2.166667e-04   p_joint 4.354839e-05

Joint ci ratio: 4.302662e-01	ci left: 3.487557e-05	ci right 5.442946e-05	k: 82	n:1870000
Cons ci ratio: 1.947652e-01	ci left: 1.954890e-04	ci right 2.381695e-04	k: 404	n:1870000
KS ci ratio: 2.961409e-02	ci left: 9.145400e-03	ci right 9.420829e-03	k: 17358	n:1870000
MFAP1   1870000 perm   1893 sec   (988 perm/sec)   p_kst 9.282353e-03   p_cons 2.160428e-04   p_joint 4.385027e-05

Joint ci ratio: 4.276974e-01	ci left: 3.516453e-05	ci right 5.472896e-05	k: 83	n:1880000
Cons ci ratio: 1.940478e-01	ci left: 1.959672e-04	ci right 2.385760e-04	k: 407	n:1880000
KS ci ratio: 2.953850e-02	ci left: 9.143745e-03	ci right 9.418409e-03	k: 17447	n:1880000
MFAP1   1880000 perm   1911 sec   (984 perm/sec)   p_kst 9.280319e-03   p_cons 2.164894e-04   p_joint 4.414894e-05

Joint ci ratio: 4.251740e-01	ci left: 3.545078e-05	ci right 5.502496e-05	k: 84	n:1890000
Cons ci ratio: 1.933383e-01	ci left: 1.964407e-04	ci right 2.389779e-04	k: 410	n:1890000
KS ci ratio: 2.946094e-02	ci left: 9.143683e-03	ci right 9.417612e-03	k: 17539	n:1890000
MFAP1   1890000 perm   1930 sec   (979 perm/sec)   p_kst 9.279894e-03   p_cons 2.169312e-04   p_joint 4.444444e-05

Joint ci ratio: 4.251741e-01	ci left: 3.526420e-05	ci right 5.473535e-05	k: 84	n:1900000
Cons ci ratio: 1.926364e-01	ci left: 1.969095e-04	ci right 2.393752e-04	k: 413	n:1900000
KS ci ratio: 2.939239e-02	ci left: 9.138399e-03	ci right 9.411521e-03	k: 17621	n:1900000
MFAP1   1900000 perm   1948 sec   (975 perm/sec)   p_kst 9.274211e-03   p_cons 2.173684e-04   p_joint 4.421053e-05

Joint ci ratio: 4.226948e-01	ci left: 3.554726e-05	ci right 5.502789e-05	k: 85	n:1910000
Cons ci ratio: 1.924043e-01	ci left: 1.963769e-04	ci right 2.386707e-04	k: 414	n:1910000
KS ci ratio: 2.931597e-02	ci left: 9.138368e-03	ci right 9.410767e-03	k: 17713	n:1910000
MFAP1   1910000 perm   1967 sec   (971 perm/sec)   p_kst 9.273822e-03   p_cons 2.167539e-04   p_joint 4.450262e-05

Joint ci ratio: 4.226949e-01	ci left: 3.536212e-05	ci right 5.474128e-05	k: 85	n:1920000
Cons ci ratio: 1.908016e-01	ci left: 1.988250e-04	ci right 2.412481e-04	k: 421	n:1920000
KS ci ratio: 2.925342e-02	ci left: 9.130065e-03	ci right 9.401627e-03	k: 17789	n:1920000
MFAP1   1920000 perm   1986 sec   (967 perm/sec)   p_kst 9.265104e-03   p_cons 2.192708e-04   p_joint 4.427083e-05

Joint ci ratio: 4.226949e-01	ci left: 3.517889e-05	ci right 5.445765e-05	k: 85	n:1930000
Cons ci ratio: 1.903511e-01	ci left: 1.987817e-04	ci right 2.410838e-04	k: 423	n:1930000
KS ci ratio: 2.916737e-02	ci left: 9.136766e-03	ci right 9.407715e-03	k: 17894	n:1930000
MFAP1   1930000 perm   2004 sec   (963 perm/sec)   p_kst 9.271503e-03   p_cons 2.191710e-04   p_joint 4.404145e-05

Joint ci ratio: 4.202586e-01	ci left: 3.545834e-05	ci right 5.474678e-05	k: 86	n:1940000
Cons ci ratio: 1.899037e-01	ci left: 1.987389e-04	ci right 2.409210e-04	k: 425	n:1940000
KS ci ratio: 2.909106e-02	ci left: 9.137770e-03	ci right 9.408028e-03	k: 17988	n:1940000
MFAP1   1940000 perm   2023 sec   (959 perm/sec)   p_kst 9.272165e-03   p_cons 2.190722e-04   p_joint 4.432990e-05

Joint ci ratio: 4.202586e-01	ci left: 3.527651e-05	ci right 5.446603e-05	k: 86	n:1950000
Cons ci ratio: 1.896813e-01	ci left: 1.982082e-04	ci right 2.402227e-04	k: 426	n:1950000
KS ci ratio: 2.899996e-02	ci left: 9.148438e-03	ci right 9.418150e-03	k: 18101	n:1950000
MFAP1   1950000 perm   2042 sec   (955 perm/sec)   p_kst 9.282564e-03   p_cons 2.184615e-04   p_joint 4.410256e-05

Joint ci ratio: 4.178639e-01	ci left: 3.555292e-05	ci right 5.475185e-05	k: 87	n:1960000
Cons ci ratio: 1.887989e-01	ci left: 1.991410e-04	ci right 2.411344e-04	k: 430	n:1960000
KS ci ratio: 2.892495e-02	ci left: 9.149375e-03	ci right 9.418405e-03	k: 18195	n:1960000
MFAP1   1960000 perm   2061 sec   (951 perm/sec)   p_kst 9.283163e-03   p_cons 2.193878e-04   p_joint 4.438776e-05

Joint ci ratio: 4.178640e-01	ci left: 3.537245e-05	ci right 5.447392e-05	k: 87	n:1970000
Cons ci ratio: 1.883624e-01	ci left: 1.990975e-04	ci right 2.409735e-04	k: 432	n:1970000
KS ci ratio: 2.885769e-02	ci left: 9.145766e-03	ci right 9.414055e-03	k: 18280	n:1970000
MFAP1   1970000 perm   2080 sec   (947 perm/sec)   p_kst 9.279188e-03   p_cons 2.192893e-04   p_joint 4.416244e-05

Joint ci ratio: 4.155097e-01	ci left: 3.564589e-05	ci right 5.475652e-05	k: 88	n:1980000
Cons ci ratio: 1.877132e-01	ci left: 1.995358e-04	ci right 2.413428e-04	k: 435	n:1980000
KS ci ratio: 2.878456e-02	ci left: 9.146207e-03	ci right 9.413817e-03	k: 18373	n:1980000
MFAP1   1980000 perm   2099 sec   (943 perm/sec)   p_kst 9.279293e-03   p_cons 2.196970e-04   p_joint 4.444444e-05

Joint ci ratio: 4.155098e-01	ci left: 3.546677e-05	ci right 5.448136e-05	k: 88	n:1990000
Cons ci ratio: 1.874984e-01	ci left: 1.990120e-04	ci right 2.406562e-04	k: 436	n:1990000
KS ci ratio: 2.872612e-02	ci left: 9.137663e-03	ci right 9.404471e-03	k: 18448	n:1990000
MFAP1   1990000 perm   2119 sec   (939 perm/sec)   p_kst 9.270352e-03   p_cons 2.190955e-04   p_joint 4.422111e-05

Joint ci ratio: 4.131949e-01	ci left: 3.573730e-05	ci right 5.476080e-05	k: 89	n:2000000
Cons ci ratio: 1.872843e-01	ci left: 1.984935e-04	ci right 2.399763e-04	k: 437	n:2000000
KS ci ratio: 2.865633e-02	ci left: 9.136652e-03	ci right 9.402772e-03	k: 18538	n:2000000
MFAP1   2000000 perm   2138 sec   (935 perm/sec)   p_kst 9.269000e-03   p_cons 2.185000e-04   p_joint 4.450000e-05

Joint ci ratio: 4.131949e-01	ci left: 3.555950e-05	ci right 5.448836e-05	k: 89	n:2010000
Cons ci ratio: 1.866461e-01	ci left: 1.989286e-04	ci right 2.403447e-04	k: 440	n:2010000
KS ci ratio: 2.858550e-02	ci left: 9.136640e-03	ci right 9.402091e-03	k: 18630	n:2010000
MFAP1   2010000 perm   2158 sec   (932 perm/sec)   p_kst 9.268657e-03   p_cons 2.189055e-04   p_joint 4.427861e-05

Joint ci ratio: 4.109183e-01	ci left: 3.582719e-05	ci right 5.476471e-05	k: 90	n:2020000
Cons ci ratio: 1.860145e-01	ci left: 1.993597e-04	ci right 2.407092e-04	k: 443	n:2020000
KS ci ratio: 2.851980e-02	ci left: 9.133679e-03	ci right 9.398424e-03	k: 18716	n:2020000
MFAP1   2020000 perm   2177 sec   (928 perm/sec)   p_kst 9.265347e-03   p_cons 2.193069e-04   p_joint 4.455446e-05

Joint ci ratio: 4.109183e-01	ci left: 3.565070e-05	ci right 5.449493e-05	k: 90	n:2030000
Cons ci ratio: 1.855969e-01	ci left: 1.993170e-04	ci right 2.405545e-04	k: 445	n:2030000
KS ci ratio: 2.844997e-02	ci left: 9.133683e-03	ci right 9.397769e-03	k: 18808	n:2030000
MFAP1   2030000 perm   2197 sec   (924 perm/sec)   p_kst 9.265025e-03   p_cons 2.192118e-04   p_joint 4.433498e-05

Joint ci ratio: 4.109184e-01	ci left: 3.547594e-05	ci right 5.422780e-05	k: 90	n:2040000
Cons ci ratio: 1.853893e-01	ci left: 1.988074e-04	ci right 2.398882e-04	k: 446	n:2040000
KS ci ratio: 2.837610e-02	ci left: 9.136608e-03	ci right 9.400082e-03	k: 18906	n:2040000
MFAP1   2040000 perm   2216 sec   (920 perm/sec)   p_kst 9.267647e-03   p_cons 2.186275e-04   p_joint 4.411765e-05

Joint ci ratio: 4.086790e-01	ci left: 3.574040e-05	ci right 5.450111e-05	k: 91	n:2050000
Cons ci ratio: 1.847702e-01	ci left: 1.992333e-04	ci right 2.402492e-04	k: 449	n:2050000
KS ci ratio: 2.830206e-02	ci left: 9.139990e-03	ci right 9.402863e-03	k: 19005	n:2050000
MFAP1   2050000 perm   2236 sec   (917 perm/sec)   p_kst 9.270732e-03   p_cons 2.190244e-04   p_joint 4.439024e-05

Joint ci ratio: 4.086790e-01	ci left: 3.556690e-05	ci right 5.423654e-05	k: 91	n:2060000
Cons ci ratio: 1.843610e-01	ci left: 1.991921e-04	ci right 2.400986e-04	k: 451	n:2060000
KS ci ratio: 2.824501e-02	ci left: 9.132735e-03	ci right 9.394861e-03	k: 19082	n:2060000
MFAP1   2060000 perm   2256 sec   (913 perm/sec)   p_kst 9.263107e-03   p_cons 2.189320e-04   p_joint 4.417476e-05

Joint ci ratio: 4.086791e-01	ci left: 3.539508e-05	ci right 5.397453e-05	k: 91	n:2070000
Cons ci ratio: 1.841575e-01	ci left: 1.986906e-04	ci right 2.394440e-04	k: 452	n:2070000
KS ci ratio: 2.818608e-02	ci left: 9.126990e-03	ci right 9.388396e-03	k: 19162	n:2070000
MFAP1   2070000 perm   2275 sec   (910 perm/sec)   p_kst 9.257005e-03   p_cons 2.183575e-04   p_joint 4.396135e-05

Joint ci ratio: 4.064759e-01	ci left: 3.565639e-05	ci right 5.424484e-05	k: 92	n:2080000
Cons ci ratio: 1.839546e-01	ci left: 1.981940e-04	ci right 2.387958e-04	k: 453	n:2080000
KS ci ratio: 2.812530e-02	ci left: 9.122733e-03	ci right 9.383444e-03	k: 19245	n:2080000
MFAP1   2080000 perm   2296 sec   (906 perm/sec)   p_kst 9.252404e-03   p_cons 2.177885e-04   p_joint 4.423077e-05

Joint ci ratio: 4.064759e-01	ci left: 3.548578e-05	ci right 5.398530e-05	k: 92	n:2090000
Cons ci ratio: 1.827508e-01	ci left: 1.999848e-04	ci right 2.406556e-04	k: 459	n:2090000
KS ci ratio: 2.805832e-02	ci left: 9.122793e-03	ci right 9.382876e-03	k: 19337	n:2090000
MFAP1   2090000 perm   2316 sec   (902 perm/sec)   p_kst 9.252153e-03   p_cons 2.196172e-04   p_joint 4.401914e-05

Joint ci ratio: 4.064760e-01	ci left: 3.531680e-05	ci right 5.372823e-05	k: 92	n:2100000
Cons ci ratio: 1.827509e-01	ci left: 1.990325e-04	ci right 2.395097e-04	k: 459	n:2100000
KS ci ratio: 2.798818e-02	ci left: 9.125218e-03	ci right 9.384709e-03	k: 19434	n:2100000
MFAP1   2100000 perm   2336 sec   (899 perm/sec)   p_kst 9.254286e-03   p_cons 2.185714e-04   p_joint 4.380952e-05

Joint ci ratio: 4.064760e-01	ci left: 3.514942e-05	ci right 5.347359e-05	k: 92	n:2110000
Cons ci ratio: 1.827510e-01	ci left: 1.980892e-04	ci right 2.383745e-04	k: 459	n:2110000
KS ci ratio: 2.791713e-02	ci left: 9.128563e-03	ci right 9.387479e-03	k: 19533	n:2110000
MFAP1   2110000 perm   2356 sec   (895 perm/sec)   p_kst 9.257346e-03   p_cons 2.175355e-04   p_joint 4.360190e-05

Joint ci ratio: 4.064761e-01	ci left: 3.498362e-05	ci right 5.322136e-05	k: 92	n:2120000
Cons ci ratio: 1.821579e-01	ci left: 1.985053e-04	ci right 2.387298e-04	k: 462	n:2120000
KS ci ratio: 2.785520e-02	ci left: 9.126255e-03	ci right 9.384522e-03	k: 19620	n:2120000
MFAP1   2120000 perm   2377 sec   (892 perm/sec)   p_kst 9.254717e-03   p_cons 2.179245e-04   p_joint 4.339623e-05

Joint ci ratio: 4.043081e-01	ci left: 3.524099e-05	ci right 5.348860e-05	k: 93	n:2130000
Cons ci ratio: 1.815706e-01	ci left: 1.989177e-04	ci right 2.390815e-04	k: 465	n:2130000
KS ci ratio: 2.778302e-02	ci left: 9.130963e-03	ci right 9.388684e-03	k: 19722	n:2130000
MFAP1   2130000 perm   2397 sec   (888 perm/sec)   p_kst 9.259155e-03   p_cons 2.183099e-04   p_joint 4.366197e-05

Joint ci ratio: 4.000743e-01	ci left: 3.591635e-05	ci right 5.426729e-05	k: 95	n:2140000
Cons ci ratio: 1.806041e-01	ci left: 2.002187e-04	ci right 2.404065e-04	k: 470	n:2140000
KS ci ratio: 2.771421e-02	ci left: 9.133772e-03	ci right 9.390923e-03	k: 19820	n:2140000
MFAP1   2140000 perm   2418 sec   (885 perm/sec)   p_kst 9.261682e-03   p_cons 2.196262e-04   p_joint 4.439252e-05

Joint ci ratio: 3.980066e-01	ci left: 3.616773e-05	ci right 5.452644e-05	k: 96	n:2150000
Cons ci ratio: 1.802219e-01	ci left: 2.001757e-04	ci right 2.402605e-04	k: 472	n:2150000
KS ci ratio: 2.764032e-02	ci left: 9.140251e-03	ci right 9.396888e-03	k: 19926	n:2150000
MFAP1   2150000 perm   2439 sec   (881 perm/sec)   p_kst 9.267907e-03   p_cons 2.195349e-04   p_joint 4.465116e-05

Joint ci ratio: 3.980067e-01	ci left: 3.600029e-05	ci right 5.427401e-05	k: 96	n:2160000
Cons ci ratio: 1.800318e-01	ci left: 1.996910e-04	ci right 2.396320e-04	k: 473	n:2160000
KS ci ratio: 2.757535e-02	ci left: 9.141153e-03	ci right 9.397202e-03	k: 20020	n:2160000
MFAP1   2160000 perm   2460 sec   (878 perm/sec)   p_kst 9.268519e-03   p_cons 2.189815e-04   p_joint 4.444444e-05

Joint ci ratio: 3.959708e-01	ci left: 3.624921e-05	ci right 5.453050e-05	k: 97	n:2170000
Cons ci ratio: 1.800319e-01	ci left: 1.987708e-04	ci right 2.385278e-04	k: 473	n:2170000
KS ci ratio: 2.751428e-02	ci left: 9.139759e-03	ci right 9.395194e-03	k: 20109	n:2170000
MFAP1   2170000 perm   2481 sec   (875 perm/sec)   p_kst 9.266820e-03   p_cons 2.179724e-04   p_joint 4.470046e-05

Joint ci ratio: 3.959708e-01	ci left: 3.608293e-05	ci right 5.428036e-05	k: 97	n:2180000
Cons ci ratio: 1.796532e-01	ci left: 1.987351e-04	ci right 2.383923e-04	k: 475	n:2180000
KS ci ratio: 2.745499e-02	ci left: 9.137468e-03	ci right 9.392279e-03	k: 20196	n:2180000
MFAP1   2180000 perm   2502 sec   (871 perm/sec)   p_kst 9.264220e-03   p_cons 2.178899e-04   p_joint 4.449541e-05

Joint ci ratio: 3.959708e-01	ci left: 3.591816e-05	ci right 5.403251e-05	k: 97	n:2190000
Cons ci ratio: 1.790897e-01	ci left: 1.991360e-04	ci right 2.387350e-04	k: 478	n:2190000
KS ci ratio: 2.738791e-02	ci left: 9.140640e-03	ci right 9.394907e-03	k: 20295	n:2190000
MFAP1   2190000 perm   2523 sec   (868 perm/sec)   p_kst 9.267123e-03   p_cons 2.182648e-04   p_joint 4.429224e-05

Joint ci ratio: 3.959709e-01	ci left: 3.575490e-05	ci right 5.378691e-05	k: 97	n:2200000
Cons ci ratio: 1.790898e-01	ci left: 1.982308e-04	ci right 2.376499e-04	k: 478	n:2200000
KS ci ratio: 2.732808e-02	ci left: 9.139269e-03	ci right 9.392934e-03	k: 20384	n:2200000
MFAP1   2200000 perm   2544 sec   (865 perm/sec)   p_kst 9.265455e-03   p_cons 2.172727e-04   p_joint 4.409091e-05

Joint ci ratio: 3.959709e-01	ci left: 3.559311e-05	ci right 5.354353e-05	k: 97	n:2210000
Cons ci ratio: 1.787171e-01	ci left: 1.981983e-04	ci right 2.375200e-04	k: 480	n:2210000
KS ci ratio: 2.726663e-02	ci left: 9.139260e-03	ci right 9.392345e-03	k: 20476	n:2210000
MFAP1   2210000 perm   2565 sec   (862 perm/sec)   p_kst 9.265158e-03   p_cons 2.171946e-04   p_joint 4.389140e-05

Joint ci ratio: 3.959710e-01	ci left: 3.543278e-05	ci right 5.330234e-05	k: 97	n:2220000
Cons ci ratio: 1.781624e-01	ci left: 1.985965e-04	ci right 2.378617e-04	k: 483	n:2220000
KS ci ratio: 2.719558e-02	ci left: 9.145962e-03	ci right 9.398563e-03	k: 20583	n:2220000
MFAP1   2220000 perm   2586 sec   (858 perm/sec)   p_kst 9.271622e-03   p_cons 2.175676e-04   p_joint 4.369369e-05

Joint ci ratio: 3.959710e-01	ci left: 3.527389e-05	ci right 5.306332e-05	k: 97	n:2230000
Cons ci ratio: 1.776127e-01	ci left: 1.989913e-04	ci right 2.382002e-04	k: 486	n:2230000
KS ci ratio: 2.713501e-02	ci left: 9.145925e-03	ci right 9.397953e-03	k: 20675	n:2230000
MFAP1   2230000 perm   2608 sec   (855 perm/sec)   p_kst 9.271300e-03   p_cons 2.179372e-04   p_joint 4.349776e-05

Joint ci ratio: 3.959710e-01	ci left: 3.511642e-05	ci right 5.282643e-05	k: 97	n:2240000
Cons ci ratio: 1.770681e-01	ci left: 1.993828e-04	ci right 2.385355e-04	k: 489	n:2240000
KS ci ratio: 2.707879e-02	ci left: 9.143227e-03	ci right 9.394651e-03	k: 20761	n:2240000
MFAP1   2240000 perm   2629 sec   (852 perm/sec)   p_kst 9.268304e-03   p_cons 2.183036e-04   p_joint 4.330357e-05

Joint ci ratio: 3.939661e-01	ci left: 3.536064e-05	ci right 5.308002e-05	k: 98	n:2250000
Cons ci ratio: 1.767079e-01	ci left: 1.993462e-04	ci right 2.384035e-04	k: 491	n:2250000
KS ci ratio: 2.703012e-02	ci left: 9.135698e-03	ci right 9.386457e-03	k: 20836	n:2250000
MFAP1   2250000 perm   2650 sec   (849 perm/sec)   p_kst 9.260444e-03   p_cons 2.182222e-04   p_joint 4.355556e-05

Joint ci ratio: 3.939661e-01	ci left: 3.520418e-05	ci right 5.284515e-05	k: 98	n:2260000
Cons ci ratio: 1.763498e-01	ci left: 1.993100e-04	ci right 2.382727e-04	k: 493	n:2260000
KS ci ratio: 2.696415e-02	ci left: 9.140103e-03	ci right 9.390361e-03	k: 20938	n:2260000
MFAP1   2260000 perm   2672 sec   (846 perm/sec)   p_kst 9.264602e-03   p_cons 2.181416e-04   p_joint 4.336283e-05

Joint ci ratio: 3.939661e-01	ci left: 3.504909e-05	ci right 5.261236e-05	k: 98	n:2270000
Cons ci ratio: 1.756401e-01	ci left: 2.001165e-04	ci right 2.390627e-04	k: 497	n:2270000
KS ci ratio: 2.689995e-02	ci left: 9.143594e-03	ci right 9.393343e-03	k: 21038	n:2270000
MFAP1   2270000 perm   2694 sec   (843 perm/sec)   p_kst 9.267841e-03   p_cons 2.189427e-04   p_joint 4.317181e-05

Joint ci ratio: 3.939662e-01	ci left: 3.489537e-05	ci right 5.238160e-05	k: 98	n:2280000
Cons ci ratio: 1.756402e-01	ci left: 1.992388e-04	ci right 2.380142e-04	k: 497	n:2280000
KS ci ratio: 2.684582e-02	ci left: 9.140521e-03	ci right 9.389675e-03	k: 21123	n:2280000
MFAP1   2280000 perm   2715 sec   (840 perm/sec)   p_kst 9.264474e-03   p_cons 2.179825e-04   p_joint 4.298246e-05

Joint ci ratio: 3.919914e-01	ci left: 3.513652e-05	ci right 5.263248e-05	k: 99	n:2290000
Cons ci ratio: 1.752886e-01	ci left: 1.992038e-04	ci right 2.378865e-04	k: 499	n:2290000
KS ci ratio: 2.677864e-02	ci left: 9.146584e-03	ci right 9.395270e-03	k: 21229	n:2290000
MFAP1   2290000 perm   2737 sec   (837 perm/sec)   p_kst 9.270306e-03   p_cons 2.179039e-04   p_joint 4.323144e-05

Joint ci ratio: 3.919914e-01	ci left: 3.498375e-05	ci right 5.240365e-05	k: 99	n:2300000
Cons ci ratio: 1.751136e-01	ci left: 1.987534e-04	ci right 2.373060e-04	k: 500	n:2300000
KS ci ratio: 2.671448e-02	ci left: 9.150868e-03	ci right 9.399065e-03	k: 21331	n:2300000
MFAP1   2300000 perm   2760 sec   (833 perm/sec)   p_kst 9.274348e-03   p_cons 2.173913e-04   p_joint 4.304348e-05

Joint ci ratio: 3.919914e-01	ci left: 3.483230e-05	ci right 5.217679e-05	k: 99	n:2310000
Cons ci ratio: 1.749391e-01	ci left: 1.983069e-04	ci right 2.367306e-04	k: 501	n:2310000
KS ci ratio: 2.665895e-02	ci left: 9.149525e-03	ci right 9.397162e-03	k: 21420	n:2310000
MFAP1   2310000 perm   2782 sec   (830 perm/sec)   p_kst 9.272727e-03   p_cons 2.168831e-04   p_joint 4.285714e-05

Joint ci ratio: 3.919915e-01	ci left: 3.468216e-05	ci right 5.195189e-05	k: 99	n:2320000
Cons ci ratio: 1.749392e-01	ci left: 1.974521e-04	ci right 2.357102e-04	k: 501	n:2320000
KS ci ratio: 2.661313e-02	ci left: 9.141771e-03	ci right 9.388767e-03	k: 21494	n:2320000
MFAP1   2320000 perm   2804 sec   (827 perm/sec)   p_kst 9.264655e-03   p_cons 2.159483e-04   p_joint 4.267241e-05

Joint ci ratio: 3.919915e-01	ci left: 3.453331e-05	ci right 5.172892e-05	k: 99	n:2330000
Cons ci ratio: 1.747653e-01	ci left: 1.970151e-04	ci right 2.351465e-04	k: 502	n:2330000
KS ci ratio: 2.655264e-02	ci left: 9.144317e-03	ci right 9.390811e-03	k: 21592	n:2330000
MFAP1   2330000 perm   2826 sec   (824 perm/sec)   p_kst 9.266953e-03   p_cons 2.154506e-04   p_joint 4.248927e-05

Joint ci ratio: 3.919915e-01	ci left: 3.438573e-05	ci right 5.150786e-05	k: 99	n:2340000
Cons ci ratio: 1.747653e-01	ci left: 1.961731e-04	ci right 2.341416e-04	k: 502	n:2340000
KS ci ratio: 2.649749e-02	ci left: 9.143445e-03	ci right 9.389396e-03	k: 21682	n:2340000
MFAP1   2340000 perm   2849 sec   (821 perm/sec)   p_kst 9.265812e-03   p_cons 2.145299e-04   p_joint 4.230769e-05

Joint ci ratio: 3.919916e-01	ci left: 3.423941e-05	ci right 5.128868e-05	k: 99	n:2350000
Cons ci ratio: 1.744189e-01	ci left: 1.961522e-04	ci right 2.340335e-04	k: 504	n:2350000
KS ci ratio: 2.643962e-02	ci left: 9.144695e-03	ci right 9.390134e-03	k: 21777	n:2350000
MFAP1   2350000 perm   2872 sec   (818 perm/sec)   p_kst 9.266809e-03   p_cons 2.144681e-04   p_joint 4.212766e-05

Joint ci ratio: 3.919916e-01	ci left: 3.409433e-05	ci right 5.107136e-05	k: 99	n:2360000
Cons ci ratio: 1.740746e-01	ci left: 1.961316e-04	ci right 2.339262e-04	k: 506	n:2360000
KS ci ratio: 2.638030e-02	ci left: 9.147197e-03	ci right 9.392145e-03	k: 21875	n:2360000
MFAP1   2360000 perm   2895 sec   (815 perm/sec)   p_kst 9.269068e-03   p_cons 2.144068e-04   p_joint 4.194915e-05

Joint ci ratio: 3.900462e-01	ci left: 3.433093e-05	ci right 5.131909e-05	k: 100	n:2370000
Cons ci ratio: 1.740747e-01	ci left: 1.953040e-04	ci right 2.329392e-04	k: 506	n:2370000
KS ci ratio: 2.632501e-02	ci left: 9.147164e-03	ci right 9.391590e-03	k: 21967	n:2370000
MFAP1   2370000 perm   2917 sec   (812 perm/sec)   p_kst 9.268776e-03   p_cons 2.135021e-04   p_joint 4.219409e-05

Joint ci ratio: 3.881294e-01	ci left: 3.456574e-05	ci right 5.156454e-05	k: 101	n:2380000
Cons ci ratio: 1.737323e-01	ci left: 1.952872e-04	ci right 2.328373e-04	k: 508	n:2380000
KS ci ratio: 2.627247e-02	ci left: 9.145462e-03	ci right 9.389347e-03	k: 22055	n:2380000
MFAP1   2380000 perm   2940 sec   (810 perm/sec)   p_kst 9.266807e-03   p_cons 2.134454e-04   p_joint 4.243697e-05

Joint ci ratio: 3.881295e-01	ci left: 3.442111e-05	ci right 5.134879e-05	k: 101	n:2390000
Cons ci ratio: 1.735620e-01	ci left: 1.948703e-04	ci right 2.322997e-04	k: 509	n:2390000
KS ci ratio: 2.621426e-02	ci left: 9.147932e-03	ci right 9.391334e-03	k: 22153	n:2390000
MFAP1   2390000 perm   2963 sec   (807 perm/sec)   p_kst 9.269038e-03   p_cons 2.129707e-04   p_joint 4.225941e-05

Joint ci ratio: 3.881295e-01	ci left: 3.427769e-05	ci right 5.113483e-05	k: 101	n:2400000
Cons ci ratio: 1.732226e-01	ci left: 1.948555e-04	ci right 2.322012e-04	k: 511	n:2400000
KS ci ratio: 2.616535e-02	ci left: 9.144172e-03	ci right 9.387014e-03	k: 22236	n:2400000
MFAP1   2400000 perm   2986 sec   (804 perm/sec)   p_kst 9.265000e-03   p_cons 2.129167e-04   p_joint 4.208333e-05

Joint ci ratio: 3.881295e-01	ci left: 3.413546e-05	ci right 5.092266e-05	k: 101	n:2410000
Cons ci ratio: 1.728853e-01	ci left: 1.948409e-04	ci right 2.321035e-04	k: 513	n:2410000
KS ci ratio: 2.611494e-02	ci left: 9.141681e-03	ci right 9.383982e-03	k: 22322	n:2410000
MFAP1   2410000 perm   3009 sec   (801 perm/sec)   p_kst 9.262241e-03   p_cons 2.128631e-04   p_joint 4.190871e-05

Joint ci ratio: 3.881296e-01	ci left: 3.399441e-05	ci right 5.071223e-05	k: 101	n:2420000
Cons ci ratio: 1.723830e-01	ci left: 1.952219e-04	ci right 2.324376e-04	k: 516	n:2420000
KS ci ratio: 2.605543e-02	ci left: 9.145780e-03	ci right 9.387628e-03	k: 22424	n:2420000
MFAP1   2420000 perm   3032 sec   (798 perm/sec)   p_kst 9.266116e-03   p_cons 2.132231e-04   p_joint 4.173554e-05

Joint ci ratio: 3.862408e-01	ci left: 3.422597e-05	ci right 5.095493e-05	k: 102	n:2430000
Cons ci ratio: 1.717199e-01	ci left: 1.959937e-04	ci right 2.331980e-04	k: 520	n:2430000
KS ci ratio: 2.599982e-02	ci left: 9.147392e-03	ci right 9.388759e-03	k: 22520	n:2430000
MFAP1   2430000 perm   3055 sec   (795 perm/sec)   p_kst 9.267490e-03   p_cons 2.139918e-04   p_joint 4.197531e-05

Joint ci ratio: 3.862408e-01	ci left: 3.408570e-05	ci right 5.074610e-05	k: 102	n:2440000
Cons ci ratio: 1.712276e-01	ci left: 1.963672e-04	ci right 2.335245e-04	k: 523	n:2440000
KS ci ratio: 2.594803e-02	ci left: 9.146548e-03	ci right 9.387405e-03	k: 22610	n:2440000
MFAP1   2440000 perm   3078 sec   (793 perm/sec)   p_kst 9.266393e-03   p_cons 2.143443e-04   p_joint 4.180328e-05

Joint ci ratio: 3.862409e-01	ci left: 3.394658e-05	ci right 5.053898e-05	k: 102	n:2450000
Cons ci ratio: 1.709017e-01	ci left: 1.963471e-04	ci right 2.334225e-04	k: 525	n:2450000
KS ci ratio: 2.589311e-02	ci left: 9.148145e-03	ci right 9.388527e-03	k: 22706	n:2450000
MFAP1   2450000 perm   3102 sec   (790 perm/sec)   p_kst 9.267755e-03   p_cons 2.142857e-04   p_joint 4.163265e-05

Joint ci ratio: 3.862409e-01	ci left: 3.380858e-05	ci right 5.033353e-05	k: 102	n:2460000
Cons ci ratio: 1.705778e-01	ci left: 1.963272e-04	ci right 2.333214e-04	k: 527	n:2460000
KS ci ratio: 2.584081e-02	ci left: 9.148114e-03	ci right 9.388002e-03	k: 22798	n:2460000
MFAP1   2460000 perm   3125 sec   (787 perm/sec)   p_kst 9.267480e-03   p_cons 2.142276e-04   p_joint 4.146341e-05

Joint ci ratio: 3.843795e-01	ci left: 3.403735e-05	ci right 5.057364e-05	k: 103	n:2470000
Cons ci ratio: 1.704165e-01	ci left: 1.959199e-04	ci right 2.327989e-04	k: 528	n:2470000
KS ci ratio: 2.578656e-02	ci left: 9.149693e-03	ci right 9.389111e-03	k: 22894	n:2470000
MFAP1   2470000 perm   3149 sec   (784 perm/sec)   p_kst 9.268826e-03   p_cons 2.137652e-04   p_joint 4.170040e-05

Joint ci ratio: 3.843795e-01	ci left: 3.390010e-05	ci right 5.036972e-05	k: 103	n:2480000
Cons ci ratio: 1.704166e-01	ci left: 1.951299e-04	ci right 2.318602e-04	k: 528	n:2480000
KS ci ratio: 2.574452e-02	ci left: 9.142846e-03	ci right 9.381689e-03	k: 22969	n:2480000
MFAP1   2480000 perm   3173 sec   (782 perm/sec)   p_kst 9.261694e-03   p_cons 2.129032e-04   p_joint 4.153226e-05

Joint ci ratio: 3.843795e-01	ci left: 3.376395e-05	ci right 5.016743e-05	k: 103	n:2490000
Cons ci ratio: 1.702558e-01	ci left: 1.947307e-04	ci right 2.313477e-04	k: 529	n:2490000
KS ci ratio: 2.569594e-02	ci left: 9.140842e-03	ci right 9.379176e-03	k: 23056	n:2490000
MFAP1   2490000 perm   3197 sec   (779 perm/sec)   p_kst 9.259438e-03   p_cons 2.124498e-04   p_joint 4.136546e-05

Joint ci ratio: 3.843796e-01	ci left: 3.362890e-05	ci right 4.996676e-05	k: 103	n:2500000
Cons ci ratio: 1.699354e-01	ci left: 1.947178e-04	ci right 2.312564e-04	k: 531	n:2500000
KS ci ratio: 2.564203e-02	ci left: 9.142830e-03	ci right 9.380709e-03	k: 23153	n:2500000
MFAP1   2500000 perm   3221 sec   (776 perm/sec)   p_kst 9.261200e-03   p_cons 2.124000e-04   p_joint 4.120000e-05

Joint ci ratio: 3.843796e-01	ci left: 3.349492e-05	ci right 4.976769e-05	k: 103	n:2510000
Cons ci ratio: 1.693001e-01	ci left: 1.954680e-04	ci right 2.319962e-04	k: 535	n:2510000
KS ci ratio: 2.559847e-02	ci left: 9.137677e-03	ci right 9.375011e-03	k: 23232	n:2510000
MFAP1   2510000 perm   3245 sec   (774 perm/sec)   p_kst 9.255777e-03   p_cons 2.131474e-04   p_joint 4.103586e-05

Joint ci ratio: 3.843796e-01	ci left: 3.336200e-05	ci right 4.957020e-05	k: 103	n:2520000
Cons ci ratio: 1.691424e-01	ci left: 1.950723e-04	ci right 2.314892e-04	k: 536	n:2520000
KS ci ratio: 2.555015e-02	ci left: 9.136113e-03	ci right 9.372953e-03	k: 23320	n:2520000
MFAP1   2520000 perm   3269 sec   (771 perm/sec)   p_kst 9.253968e-03   p_cons 2.126984e-04   p_joint 4.087302e-05

Joint ci ratio: 3.843796e-01	ci left: 3.323013e-05	ci right 4.937427e-05	k: 103	n:2530000
Cons ci ratio: 1.691425e-01	ci left: 1.943013e-04	ci right 2.305743e-04	k: 536	n:2530000
KS ci ratio: 2.548947e-02	ci left: 9.143596e-03	ci right 9.380059e-03	k: 23431	n:2530000
MFAP1   2530000 perm   3293 sec   (768 perm/sec)   p_kst 9.261265e-03   p_cons 2.118577e-04   p_joint 4.071146e-05

Joint ci ratio: 3.807360e-01	ci left: 3.381099e-05	ci right 5.004266e-05	k: 105	n:2540000
Cons ci ratio: 1.686720e-01	ci left: 1.946675e-04	ci right 2.308975e-04	k: 539	n:2540000
KS ci ratio: 2.544340e-02	ci left: 9.140849e-03	ci right 9.376807e-03	k: 23516	n:2540000
MFAP1   2540000 perm   3317 sec   (766 perm/sec)   p_kst 9.258268e-03   p_cons 2.122047e-04   p_joint 4.133858e-05

Joint ci ratio: 3.807361e-01	ci left: 3.367839e-05	ci right 4.984641e-05	k: 105	n:2550000
Cons ci ratio: 1.682054e-01	ci left: 1.950310e-04	ci right 2.312180e-04	k: 542	n:2550000
KS ci ratio: 2.539487e-02	ci left: 9.140073e-03	ci right 9.375554e-03	k: 23606	n:2550000
MFAP1   2550000 perm   3341 sec   (763 perm/sec)   p_kst 9.257255e-03   p_cons 2.125490e-04   p_joint 4.117647e-05

Joint ci ratio: 3.807361e-01	ci left: 3.354684e-05	ci right 4.965170e-05	k: 105	n:2560000
Cons ci ratio: 1.677426e-01	ci left: 1.953917e-04	ci right 2.315359e-04	k: 545	n:2560000
KS ci ratio: 2.535471e-02	ci left: 9.133480e-03	ci right 9.368414e-03	k: 23681	n:2560000
MFAP1   2560000 perm   3365 sec   (761 perm/sec)   p_kst 9.250391e-03   p_cons 2.128906e-04   p_joint 4.101563e-05

Joint ci ratio: 3.807361e-01	ci left: 3.341630e-05	ci right 4.945850e-05	k: 105	n:2570000
Cons ci ratio: 1.675892e-01	ci left: 1.950042e-04	ci right 2.310404e-04	k: 546	n:2570000
KS ci ratio: 2.529487e-02	ci left: 9.141245e-03	ci right 9.375816e-03	k: 23793	n:2570000
MFAP1   2570000 perm   3390 sec   (758 perm/sec)   p_kst 9.257977e-03   p_cons 2.124514e-04   p_joint 4.085603e-05

Joint ci ratio: 3.807362e-01	ci left: 3.328678e-05	ci right 4.926681e-05	k: 105	n:2580000
Cons ci ratio: 1.675893e-01	ci left: 1.942484e-04	ci right 2.301449e-04	k: 546	n:2580000
KS ci ratio: 2.524291e-02	ci left: 9.143559e-03	ci right 9.377700e-03	k: 23891	n:2580000
MFAP1   2580000 perm   3415 sec   (756 perm/sec)   p_kst 9.260078e-03   p_cons 2.116279e-04   p_joint 4.069767e-05

Joint ci ratio: 3.807362e-01	ci left: 3.315826e-05	ci right 4.907659e-05	k: 105	n:2590000
Cons ci ratio: 1.672838e-01	ci left: 1.942382e-04	ci right 2.300609e-04	k: 548	n:2590000
KS ci ratio: 2.519499e-02	ci left: 9.143169e-03	ci right 9.376849e-03	k: 23982	n:2590000
MFAP1   2590000 perm   3440 sec   (753 perm/sec)   p_kst 9.259459e-03   p_cons 2.115830e-04   p_joint 4.054054e-05

Joint ci ratio: 3.789528e-01	ci left: 3.337862e-05	ci right 4.930900e-05	k: 106	n:2600000
Cons ci ratio: 1.665271e-01	ci left: 1.953339e-04	ci right 2.311793e-04	k: 553	n:2600000
KS ci ratio: 2.514786e-02	ci left: 9.142400e-03	ci right 9.375618e-03	k: 24072	n:2600000
MFAP1   2600000 perm   3465 sec   (750 perm/sec)   p_kst 9.258462e-03   p_cons 2.126923e-04   p_joint 4.076923e-05

Joint ci ratio: 3.789529e-01	ci left: 3.325073e-05	ci right 4.912008e-05	k: 106	n:2610000
Cons ci ratio: 1.660780e-01	ci left: 1.956871e-04	ci right 2.314908e-04	k: 556	n:2610000
KS ci ratio: 2.510466e-02	ci left: 9.138973e-03	ci right 9.371696e-03	k: 24155	n:2610000
MFAP1   2610000 perm   3490 sec   (748 perm/sec)   p_kst 9.254789e-03   p_cons 2.130268e-04   p_joint 4.061303e-05

Joint ci ratio: 3.754600e-01	ci left: 3.381481e-05	ci right 4.976800e-05	k: 108	n:2620000
Cons ci ratio: 1.657806e-01	ci left: 1.956719e-04	ci right 2.314023e-04	k: 558	n:2620000
KS ci ratio: 2.506169e-02	ci left: 9.135572e-03	ci right 9.367805e-03	k: 24238	n:2620000
MFAP1   2620000 perm   3515 sec   (745 perm/sec)   p_kst 9.251145e-03   p_cons 2.129771e-04   p_joint 4.122137e-05

Joint ci ratio: 3.737494e-01	ci left: 3.403067e-05	ci right 4.999463e-05	k: 109	n:2630000
Cons ci ratio: 1.653375e-01	ci left: 1.960213e-04	ci right 2.317103e-04	k: 561	n:2630000
KS ci ratio: 2.501582e-02	ci left: 9.134464e-03	ci right 9.366238e-03	k: 24327	n:2630000
MFAP1   2630000 perm   3541 sec   (743 perm/sec)   p_kst 9.249810e-03   p_cons 2.133080e-04   p_joint 4.144487e-05

Joint ci ratio: 3.737495e-01	ci left: 3.390176e-05	ci right 4.980526e-05	k: 109	n:2640000
Cons ci ratio: 1.653376e-01	ci left: 1.952788e-04	ci right 2.308326e-04	k: 561	n:2640000
KS ci ratio: 2.495783e-02	ci left: 9.142400e-03	ci right 9.373830e-03	k: 24440	n:2640000
MFAP1   2640000 perm   3566 sec   (740 perm/sec)   p_kst 9.257576e-03   p_cons 2.125000e-04   p_joint 4.128788e-05

Joint ci ratio: 3.737495e-01	ci left: 3.377383e-05	ci right 4.961731e-05	k: 109	n:2650000
Cons ci ratio: 1.647523e-01	ci left: 1.959890e-04	ci right 2.315333e-04	k: 565	n:2650000
KS ci ratio: 2.491509e-02	ci left: 9.139401e-03	ci right 9.370353e-03	k: 24524	n:2650000
MFAP1   2650000 perm   3592 sec   (738 perm/sec)   p_kst 9.254340e-03   p_cons 2.132075e-04   p_joint 4.113208e-05

Joint ci ratio: 3.737495e-01	ci left: 3.364686e-05	ci right 4.943078e-05	k: 109	n:2660000
Cons ci ratio: 1.647523e-01	ci left: 1.952522e-04	ci right 2.306629e-04	k: 565	n:2660000
KS ci ratio: 2.486951e-02	ci left: 9.138666e-03	ci right 9.369171e-03	k: 24614	n:2660000
MFAP1   2660000 perm   3617 sec   (735 perm/sec)   p_kst 9.253383e-03   p_cons 2.124060e-04   p_joint 4.097744e-05

Joint ci ratio: 3.720621e-01	ci left: 3.386028e-05	ci right 4.965513e-05	k: 110	n:2670000
Cons ci ratio: 1.644620e-01	ci left: 1.952391e-04	ci right 2.305789e-04	k: 567	n:2670000
KS ci ratio: 2.482824e-02	ci left: 9.134959e-03	ci right 9.364983e-03	k: 24696	n:2670000
MFAP1   2670000 perm   3642 sec   (733 perm/sec)   p_kst 9.249438e-03   p_cons 2.123596e-04   p_joint 4.119850e-05

Joint ci ratio: 3.703974e-01	ci left: 3.407226e-05	ci right 4.987764e-05	k: 111	n:2680000
Cons ci ratio: 1.641732e-01	ci left: 1.952262e-04	ci right 2.304954e-04	k: 569	n:2680000
KS ci ratio: 2.478465e-02	ci left: 9.133135e-03	ci right 9.362703e-03	k: 24783	n:2680000
MFAP1   2680000 perm   3668 sec   (731 perm/sec)   p_kst 9.247388e-03   p_cons 2.123134e-04   p_joint 4.141791e-05

Joint ci ratio: 3.687548e-01	ci left: 3.428282e-05	ci right 5.009834e-05	k: 112	n:2690000
Cons ci ratio: 1.637429e-01	ci left: 1.955699e-04	ci right 2.307995e-04	k: 572	n:2690000
KS ci ratio: 2.473878e-02	ci left: 9.133172e-03	ci right 9.362310e-03	k: 24875	n:2690000
MFAP1   2690000 perm   3693 sec   (728 perm/sec)   p_kst 9.247212e-03   p_cons 2.126394e-04   p_joint 4.163569e-05

Joint ci ratio: 3.687548e-01	ci left: 3.415584e-05	ci right 4.991279e-05	k: 112	n:2700000
Cons ci ratio: 1.634579e-01	ci left: 1.955560e-04	ci right 2.307157e-04	k: 574	n:2700000
KS ci ratio: 2.468668e-02	ci left: 9.137994e-03	ci right 9.366764e-03	k: 24980	n:2700000
MFAP1   2700000 perm   3719 sec   (726 perm/sec)   p_kst 9.251852e-03   p_cons 2.125926e-04   p_joint 4.148148e-05

Joint ci ratio: 3.687548e-01	ci left: 3.402981e-05	ci right 4.972861e-05	k: 112	n:2710000
Cons ci ratio: 1.631743e-01	ci left: 1.955422e-04	ci right 2.306325e-04	k: 576	n:2710000
KS ci ratio: 2.464283e-02	ci left: 9.136913e-03	ci right 9.365244e-03	k: 25069	n:2710000
MFAP1   2710000 perm   3745 sec   (724 perm/sec)   p_kst 9.250554e-03   p_cons 2.125461e-04   p_joint 4.132841e-05

Joint ci ratio: 3.687549e-01	ci left: 3.390470e-05	ci right 4.954579e-05	k: 112	n:2720000
Cons ci ratio: 1.627518e-01	ci left: 1.958813e-04	ci right 2.309325e-04	k: 579	n:2720000
KS ci ratio: 2.459972e-02	ci left: 9.135476e-03	ci right 9.363365e-03	k: 25157	n:2720000
MFAP1   2720000 perm   3772 sec   (721 perm/sec)   p_kst 9.248897e-03   p_cons 2.128676e-04   p_joint 4.117647e-05

Joint ci ratio: 3.687549e-01	ci left: 3.378050e-05	ci right 4.936430e-05	k: 112	n:2730000
Cons ci ratio: 1.626117e-01	ci left: 1.955152e-04	ci right 2.304678e-04	k: 580	n:2730000
KS ci ratio: 2.455830e-02	ci left: 9.132956e-03	ci right 9.360394e-03	k: 25242	n:2730000
MFAP1   2730000 perm   3800 sec   (718 perm/sec)   p_kst 9.246154e-03   p_cons 2.124542e-04   p_joint 4.102564e-05

Joint ci ratio: 3.671339e-01	ci left: 3.398844e-05	ci right 4.958270e-05	k: 113	n:2740000
Cons ci ratio: 1.621934e-01	ci left: 1.958520e-04	ci right 2.307660e-04	k: 583	n:2740000
KS ci ratio: 2.451270e-02	ci left: 9.133721e-03	ci right 9.360749e-03	k: 25336	n:2740000
MFAP1   2740000 perm   3826 sec   (716 perm/sec)   p_kst 9.246715e-03   p_cons 2.127737e-04   p_joint 4.124088e-05

Joint ci ratio: 3.671340e-01	ci left: 3.386484e-05	ci right 4.940240e-05	k: 113	n:2750000
Cons ci ratio: 1.620548e-01	ci left: 1.954887e-04	ci right 2.303053e-04	k: 584	n:2750000
KS ci ratio: 2.446686e-02	ci left: 9.134841e-03	ci right 9.361467e-03	k: 25431	n:2750000
MFAP1   2750000 perm   3852 sec   (714 perm/sec)   p_kst 9.247636e-03   p_cons 2.123636e-04   p_joint 4.109091e-05

Joint ci ratio: 3.671340e-01	ci left: 3.374214e-05	ci right 4.922341e-05	k: 113	n:2760000
Cons ci ratio: 1.616408e-01	ci left: 1.958233e-04	ci right 2.306018e-04	k: 587	n:2760000
KS ci ratio: 2.443094e-02	ci left: 9.128751e-03	ci right 9.354889e-03	k: 25506	n:2760000
MFAP1   2760000 perm   3878 sec   (712 perm/sec)   p_kst 9.241304e-03   p_cons 2.126812e-04   p_joint 4.094203e-05

Joint ci ratio: 3.671340e-01	ci left: 3.362033e-05	ci right 4.904571e-05	k: 113	n:2770000
Cons ci ratio: 1.615036e-01	ci left: 1.954628e-04	ci right 2.301449e-04	k: 588	n:2770000
KS ci ratio: 2.438123e-02	ci left: 9.133112e-03	ci right 9.358891e-03	k: 25610	n:2770000
MFAP1   2770000 perm   3904 sec   (709 perm/sec)   p_kst 9.245487e-03   p_cons 2.122744e-04   p_joint 4.079422e-05

Joint ci ratio: 3.671340e-01	ci left: 3.349939e-05	ci right 4.886928e-05	k: 113	n:2780000
Cons ci ratio: 1.615036e-01	ci left: 1.947597e-04	ci right 2.293170e-04	k: 588	n:2780000
KS ci ratio: 2.433947e-02	ci left: 9.131721e-03	ci right 9.357073e-03	k: 25698	n:2780000
MFAP1   2780000 perm   3931 sec   (707 perm/sec)   p_kst 9.243885e-03   p_cons 2.115108e-04   p_joint 4.064748e-05

Joint ci ratio: 3.671341e-01	ci left: 3.337932e-05	ci right 4.869412e-05	k: 113	n:2790000
Cons ci ratio: 1.612301e-01	ci left: 1.947495e-04	ci right 2.292408e-04	k: 590	n:2790000
KS ci ratio: 2.429460e-02	ci left: 9.132834e-03	ci right 9.357792e-03	k: 25793	n:2790000
MFAP1   2790000 perm   3957 sec   (705 perm/sec)   p_kst 9.244803e-03   p_cons 2.114695e-04   p_joint 4.050179e-05

Joint ci ratio: 3.671341e-01	ci left: 3.326011e-05	ci right 4.852022e-05	k: 113	n:2800000
Cons ci ratio: 1.609580e-01	ci left: 1.947395e-04	ci right 2.291652e-04	k: 592	n:2800000
KS ci ratio: 2.425565e-02	ci left: 9.129679e-03	ci right 9.354195e-03	k: 25876	n:2800000
MFAP1   2800000 perm   3983 sec   (703 perm/sec)   p_kst 9.241429e-03   p_cons 2.114286e-04   p_joint 4.035714e-05

Joint ci ratio: 3.671341e-01	ci left: 3.314175e-05	ci right 4.834755e-05	k: 113	n:2810000
Cons ci ratio: 1.608225e-01	ci left: 1.943880e-04	ci right 2.287198e-04	k: 593	n:2810000
KS ci ratio: 2.421359e-02	ci left: 9.129024e-03	ci right 9.353128e-03	k: 25966	n:2810000
MFAP1   2810000 perm   4010 sec   (701 perm/sec)   p_kst 9.240569e-03   p_cons 2.110320e-04   p_joint 4.021352e-05

Joint ci ratio: 3.671342e-01	ci left: 3.302422e-05	ci right 4.817610e-05	k: 113	n:2820000
Cons ci ratio: 1.604179e-01	ci left: 1.947198e-04	ci right 2.290153e-04	k: 596	n:2820000
KS ci ratio: 2.417034e-02	ci left: 9.129430e-03	ci right 9.353139e-03	k: 26059	n:2820000
MFAP1   2820000 perm   4037 sec   (699 perm/sec)   p_kst 9.240780e-03   p_cons 2.113475e-04   p_joint 4.007092e-05

Joint ci ratio: 3.671342e-01	ci left: 3.290753e-05	ci right 4.800587e-05	k: 113	n:2830000
Cons ci ratio: 1.601499e-01	ci left: 1.947101e-04	ci right 2.289411e-04	k: 598	n:2830000
KS ci ratio: 2.412081e-02	ci left: 9.134752e-03	ci right 9.358127e-03	k: 26166	n:2830000
MFAP1   2830000 perm   4064 sec   (696 perm/sec)   p_kst 9.245936e-03   p_cons 2.113074e-04   p_joint 3.992933e-05

Joint ci ratio: 3.671342e-01	ci left: 3.279166e-05	ci right 4.783684e-05	k: 113	n:2840000
Cons ci ratio: 1.600164e-01	ci left: 1.943625e-04	ci right 2.285012e-04	k: 599	n:2840000
KS ci ratio: 2.407852e-02	ci left: 9.134787e-03	ci right 9.357765e-03	k: 26258	n:2840000
MFAP1   2840000 perm   4090 sec   (694 perm/sec)   p_kst 9.245775e-03   p_cons 2.109155e-04   p_joint 3.978873e-05

Joint ci ratio: 3.671342e-01	ci left: 3.267660e-05	ci right 4.766899e-05	k: 113	n:2850000
Cons ci ratio: 1.594856e-01	ci left: 1.950279e-04	ci right 2.291590e-04	k: 603	n:2850000
KS ci ratio: 2.403323e-02	ci left: 9.137263e-03	ci right 9.359876e-03	k: 26357	n:2850000
MFAP1   2850000 perm   4117 sec   (692 perm/sec)   p_kst 9.248070e-03   p_cons 2.115789e-04   p_joint 3.964912e-05

Joint ci ratio: 3.655345e-01	ci left: 3.287981e-05	ci right 4.788401e-05	k: 114	n:2860000
Cons ci ratio: 1.592222e-01	ci left: 1.950174e-04	ci right 2.290849e-04	k: 605	n:2860000
KS ci ratio: 2.399689e-02	ci left: 9.133118e-03	ci right 9.355290e-03	k: 26437	n:2860000
MFAP1   2860000 perm   4145 sec   (690 perm/sec)   p_kst 9.243706e-03   p_cons 2.115385e-04   p_joint 3.986014e-05

Joint ci ratio: 3.655345e-01	ci left: 3.276524e-05	ci right 4.771717e-05	k: 114	n:2870000
Cons ci ratio: 1.592223e-01	ci left: 1.943379e-04	ci right 2.282867e-04	k: 605	n:2870000
KS ci ratio: 2.395799e-02	ci left: 9.131081e-03	ci right 9.352838e-03	k: 26523	n:2870000
MFAP1   2870000 perm   4172 sec   (688 perm/sec)   p_kst 9.241463e-03   p_cons 2.108014e-04   p_joint 3.972125e-05

Joint ci ratio: 3.655345e-01	ci left: 3.265148e-05	ci right 4.755149e-05	k: 114	n:2880000
Cons ci ratio: 1.590911e-01	ci left: 1.939965e-04	ci right 2.278551e-04	k: 606	n:2880000
KS ci ratio: 2.391564e-02	ci left: 9.131819e-03	ci right 9.353197e-03	k: 26617	n:2880000
MFAP1   2880000 perm   4199 sec   (686 perm/sec)   p_kst 9.242014e-03   p_cons 2.104167e-04   p_joint 3.958333e-05

Joint ci ratio: 3.655345e-01	ci left: 3.253850e-05	ci right 4.738695e-05	k: 114	n:2890000
Cons ci ratio: 1.586994e-01	ci left: 1.943220e-04	ci right 2.281460e-04	k: 609	n:2890000
KS ci ratio: 2.388119e-02	ci left: 9.126706e-03	ci right 9.347636e-03	k: 26694	n:2890000
MFAP1   2890000 perm   4227 sec   (684 perm/sec)   p_kst 9.236678e-03   p_cons 2.107266e-04   p_joint 3.944637e-05

Joint ci ratio: 3.639555e-01	ci left: 3.273952e-05	ci right 4.759984e-05	k: 115	n:2900000
Cons ci ratio: 1.584399e-01	ci left: 1.943142e-04	ci right 2.280763e-04	k: 611	n:2900000
KS ci ratio: 2.383880e-02	ci left: 9.127797e-03	ci right 9.348357e-03	k: 26789	n:2900000
MFAP1   2900000 perm   4254 sec   (682 perm/sec)   p_kst 9.237586e-03   p_cons 2.106897e-04   p_joint 3.965517e-05

Joint ci ratio: 3.639555e-01	ci left: 3.262701e-05	ci right 4.743627e-05	k: 115	n:2910000
Cons ci ratio: 1.583106e-01	ci left: 1.939765e-04	ci right 2.276498e-04	k: 612	n:2910000
KS ci ratio: 2.379842e-02	ci left: 9.127516e-03	ci right 9.347689e-03	k: 26880	n:2910000
MFAP1   2910000 perm   4282 sec   (680 perm/sec)   p_kst 9.237113e-03   p_cons 2.103093e-04   p_joint 3.951890e-05

Joint ci ratio: 3.639556e-01	ci left: 3.251528e-05	ci right 4.727381e-05	k: 115	n:2920000
Cons ci ratio: 1.583107e-01	ci left: 1.933122e-04	ci right 2.268701e-04	k: 612	n:2920000
KS ci ratio: 2.376447e-02	ci left: 9.122470e-03	ci right 9.342204e-03	k: 26957	n:2920000
MFAP1   2920000 perm   4310 sec   (677 perm/sec)   p_kst 9.231849e-03   p_cons 2.095890e-04   p_joint 3.938356e-05

Joint ci ratio: 3.639556e-01	ci left: 3.240430e-05	ci right 4.711247e-05	k: 115	n:2930000
Cons ci ratio: 1.583107e-01	ci left: 1.926524e-04	ci right 2.260958e-04	k: 612	n:2930000
KS ci ratio: 2.372092e-02	ci left: 9.124923e-03	ci right 9.344308e-03	k: 27056	n:2930000
MFAP1   2930000 perm   4338 sec   (675 perm/sec)   p_kst 9.234130e-03   p_cons 2.088737e-04   p_joint 3.924915e-05

Joint ci ratio: 3.639556e-01	ci left: 3.229408e-05	ci right 4.695223e-05	k: 115	n:2940000
Cons ci ratio: 1.577967e-01	ci left: 1.933039e-04	ci right 2.267411e-04	k: 616	n:2940000
KS ci ratio: 2.368026e-02	ci left: 9.125331e-03	ci right 9.344345e-03	k: 27149	n:2940000
MFAP1   2940000 perm   4366 sec   (673 perm/sec)   p_kst 9.234354e-03   p_cons 2.095238e-04   p_joint 3.911565e-05

Joint ci ratio: 3.623969e-01	ci left: 3.249266e-05	ci right 4.716285e-05	k: 116	n:2950000
Cons ci ratio: 1.575415e-01	ci left: 1.932998e-04	ci right 2.266772e-04	k: 618	n:2950000
KS ci ratio: 2.363980e-02	ci left: 9.125737e-03	ci right 9.344381e-03	k: 27242	n:2950000
MFAP1   2950000 perm   4393 sec   (671 perm/sec)   p_kst 9.234576e-03   p_cons 2.094915e-04   p_joint 3.932203e-05

Joint ci ratio: 3.623969e-01	ci left: 3.238289e-05	ci right 4.700352e-05	k: 116	n:2960000
Cons ci ratio: 1.575416e-01	ci left: 1.926468e-04	ci right 2.259114e-04	k: 618	n:2960000
KS ci ratio: 2.359781e-02	ci left: 9.127484e-03	ci right 9.345775e-03	k: 27339	n:2960000
MFAP1   2960000 perm   4421 sec   (669 perm/sec)   p_kst 9.236149e-03   p_cons 2.087838e-04   p_joint 3.918919e-05

Joint ci ratio: 3.623969e-01	ci left: 3.227386e-05	ci right 4.684526e-05	k: 116	n:2970000
Cons ci ratio: 1.572877e-01	ci left: 1.926450e-04	ci right 2.258507e-04	k: 620	n:2970000
KS ci ratio: 2.356255e-02	ci left: 9.124198e-03	ci right 9.342081e-03	k: 27421	n:2970000
MFAP1   2970000 perm   4450 sec   (667 perm/sec)   p_kst 9.232660e-03   p_cons 2.087542e-04   p_joint 3.905724e-05

Joint ci ratio: 3.623970e-01	ci left: 3.216555e-05	ci right 4.668806e-05	k: 116	n:2980000
Cons ci ratio: 1.571612e-01	ci left: 1.923209e-04	ci right 2.254415e-04	k: 621	n:2980000
KS ci ratio: 2.351622e-02	ci left: 9.129608e-03	ci right 9.347186e-03	k: 27529	n:2980000
MFAP1   2980000 perm   4478 sec   (666 perm/sec)   p_kst 9.237919e-03   p_cons 2.083893e-04   p_joint 3.892617e-05

Joint ci ratio: 3.623970e-01	ci left: 3.205798e-05	ci right 4.653191e-05	k: 116	n:2990000
Cons ci ratio: 1.567836e-01	ci left: 1.926417e-04	ci right 2.257303e-04	k: 624	n:2990000
KS ci ratio: 2.347874e-02	ci left: 9.128333e-03	ci right 9.345529e-03	k: 27617	n:2990000
MFAP1   2990000 perm   4506 sec   (664 perm/sec)   p_kst 9.236455e-03   p_cons 2.086957e-04   p_joint 3.879599e-05

Joint ci ratio: 3.623970e-01	ci left: 3.195112e-05	ci right 4.637680e-05	k: 116	n:3000000
Cons ci ratio: 1.564086e-01	ci left: 1.929603e-04	ci right 2.260170e-04	k: 627	n:3000000
KS ci ratio: 2.343803e-02	ci left: 9.129718e-03	ci right 9.346565e-03	k: 27713	n:3000000
MFAP1   3000000 perm   4535 sec   (661 perm/sec)   p_kst 9.237667e-03   p_cons 2.090000e-04   p_joint 3.866667e-05

Joint ci ratio: 3.623970e-01	ci left: 3.184497e-05	ci right 4.622273e-05	k: 116	n:3010000
Cons ci ratio: 1.561602e-01	ci left: 1.929577e-04	ci right 2.259565e-04	k: 629	n:3010000
KS ci ratio: 2.338904e-02	ci left: 9.137699e-03	ci right 9.354276e-03	k: 27829	n:3010000
MFAP1   3010000 perm   4564 sec   (659 perm/sec)   p_kst 9.245515e-03   p_cons 2.089701e-04   p_joint 3.853821e-05

Joint ci ratio: 3.593387e-01	ci left: 3.234173e-05	ci right 4.679172e-05	k: 118	n:3020000
Cons ci ratio: 1.557897e-01	ci left: 1.932734e-04	ci right 2.262404e-04	k: 632	n:3020000
KS ci ratio: 2.335132e-02	ci left: 9.137069e-03	ci right 9.353277e-03	k: 27919	n:3020000
MFAP1   3020000 perm   4593 sec   (658 perm/sec)   p_kst 9.244702e-03   p_cons 2.092715e-04   p_joint 3.907285e-05

Joint ci ratio: 3.578383e-01	ci left: 3.253530e-05	ci right 4.699693e-05	k: 119	n:3030000
Cons ci ratio: 1.557897e-01	ci left: 1.926355e-04	ci right 2.254938e-04	k: 632	n:3030000
KS ci ratio: 2.331210e-02	ci left: 9.137756e-03	ci right 9.353613e-03	k: 28013	n:3030000
MFAP1   3030000 perm   4622 sec   (656 perm/sec)   p_kst 9.245215e-03   p_cons 2.085809e-04   p_joint 3.927393e-05

Joint ci ratio: 3.563565e-01	ci left: 3.272771e-05	ci right 4.720067e-05	k: 120	n:3040000
Cons ci ratio: 1.554218e-01	ci left: 1.929503e-04	ci right 2.257773e-04	k: 635	n:3040000
KS ci ratio: 2.326682e-02	ci left: 9.143344e-03	ci right 9.358908e-03	k: 28122	n:3040000
MFAP1   3040000 perm   4650 sec   (654 perm/sec)   p_kst 9.250658e-03   p_cons 2.088816e-04   p_joint 3.947368e-05

Joint ci ratio: 3.563565e-01	ci left: 3.262041e-05	ci right 4.704591e-05	k: 120	n:3050000
Cons ci ratio: 1.554219e-01	ci left: 1.923177e-04	ci right 2.250370e-04	k: 635	n:3050000
KS ci ratio: 2.322844e-02	ci left: 9.143681e-03	ci right 9.358892e-03	k: 28215	n:3050000
MFAP1   3050000 perm   4680 sec   (652 perm/sec)   p_kst 9.250820e-03   p_cons 2.081967e-04   p_joint 3.934426e-05

Joint ci ratio: 3.563565e-01	ci left: 3.251380e-05	ci right 4.689217e-05	k: 120	n:3060000
Cons ci ratio: 1.554219e-01	ci left: 1.916892e-04	ci right 2.243016e-04	k: 635	n:3060000
KS ci ratio: 2.318984e-02	ci left: 9.144340e-03	ci right 9.359204e-03	k: 28309	n:3060000
MFAP1   3060000 perm   4709 sec   (650 perm/sec)   p_kst 9.251307e-03   p_cons 2.075163e-04   p_joint 3.921569e-05

Joint ci ratio: 3.563566e-01	ci left: 3.240790e-05	ci right 4.673943e-05	k: 120	n:3070000
Cons ci ratio: 1.551781e-01	ci left: 1.916909e-04	ci right 2.242477e-04	k: 637	n:3070000
KS ci ratio: 2.315719e-02	ci left: 9.140462e-03	ci right 9.354928e-03	k: 28389	n:3070000
MFAP1   3070000 perm   4739 sec   (648 perm/sec)   p_kst 9.247231e-03   p_cons 2.074919e-04   p_joint 3.908795e-05

Joint ci ratio: 3.563566e-01	ci left: 3.230268e-05	ci right 4.658767e-05	k: 120	n:3080000
Cons ci ratio: 1.549355e-01	ci left: 1.916927e-04	ci right 2.241942e-04	k: 639	n:3080000
KS ci ratio: 2.312017e-02	ci left: 9.140159e-03	ci right 9.354271e-03	k: 28480	n:3080000
MFAP1   3080000 perm   4768 sec   (646 perm/sec)   p_kst 9.246753e-03   p_cons 2.074675e-04   p_joint 3.896104e-05

Joint ci ratio: 3.563566e-01	ci left: 3.219814e-05	ci right 4.643691e-05	k: 120	n:3090000
Cons ci ratio: 1.548146e-01	ci left: 1.913834e-04	ci right 2.238048e-04	k: 640	n:3090000
KS ci ratio: 2.308048e-02	ci left: 9.142112e-03	ci right 9.355897e-03	k: 28578	n:3090000
MFAP1   3090000 perm   4797 sec   (644 perm/sec)   p_kst 9.248544e-03   p_cons 2.071197e-04   p_joint 3.883495e-05

Joint ci ratio: 3.563566e-01	ci left: 3.209427e-05	ci right 4.628711e-05	k: 120	n:3100000
Cons ci ratio: 1.545737e-01	ci left: 1.913863e-04	ci right 2.237530e-04	k: 642	n:3100000
KS ci ratio: 2.304545e-02	ci left: 9.140524e-03	ci right 9.353943e-03	k: 28665	n:3100000
MFAP1   3100000 perm   4826 sec   (642 perm/sec)   p_kst 9.246774e-03   p_cons 2.070968e-04   p_joint 3.870968e-05

Joint ci ratio: 3.563566e-01	ci left: 3.199107e-05	ci right 4.613828e-05	k: 120	n:3110000
Cons ci ratio: 1.544536e-01	ci left: 1.910800e-04	ci right 2.233675e-04	k: 643	n:3110000
KS ci ratio: 2.301219e-02	ci left: 9.137667e-03	ci right 9.350708e-03	k: 28748	n:3110000
MFAP1   3110000 perm   4855 sec   (641 perm/sec)   p_kst 9.243730e-03   p_cons 2.067524e-04   p_joint 3.858521e-05

Joint ci ratio: 3.563567e-01	ci left: 3.188854e-05	ci right 4.599040e-05	k: 120	n:3120000
Cons ci ratio: 1.543339e-01	ci left: 1.907757e-04	ci right 2.229844e-04	k: 644	n:3120000
KS ci ratio: 2.297466e-02	ci left: 9.138335e-03	ci right 9.351039e-03	k: 28842	n:3120000
MFAP1   3120000 perm   4885 sec   (639 perm/sec)   p_kst 9.244231e-03   p_cons 2.064103e-04   p_joint 3.846154e-05

Joint ci ratio: 3.548932e-01	ci left: 3.207761e-05	ci right 4.619138e-05	k: 121	n:3130000
Cons ci ratio: 1.539762e-01	ci left: 1.910877e-04	ci right 2.232674e-04	k: 647	n:3130000
KS ci ratio: 2.293650e-02	ci left: 9.139634e-03	ci right 9.352011e-03	k: 28938	n:3130000
MFAP1   3130000 perm   4914 sec   (637 perm/sec)   p_kst 9.245367e-03   p_cons 2.067093e-04   p_joint 3.865815e-05

Joint ci ratio: 3.548932e-01	ci left: 3.197545e-05	ci right 4.604427e-05	k: 121	n:3140000
Cons ci ratio: 1.538575e-01	ci left: 1.907853e-04	ci right 2.228871e-04	k: 648	n:3140000
KS ci ratio: 2.289934e-02	ci left: 9.140291e-03	ci right 9.352335e-03	k: 29032	n:3140000
MFAP1   3140000 perm   4943 sec   (635 perm/sec)   p_kst 9.245860e-03   p_cons 2.063694e-04   p_joint 3.853503e-05

Joint ci ratio: 3.534475e-01	ci left: 3.216316e-05	ci right 4.624369e-05	k: 122	n:3150000
Cons ci ratio: 1.537392e-01	ci left: 1.904849e-04	ci right 2.225092e-04	k: 649	n:3150000
KS ci ratio: 2.285800e-02	ci left: 9.144418e-03	ci right 9.356169e-03	k: 29137	n:3150000
MFAP1   3150000 perm   4974 sec   (633 perm/sec)   p_kst 9.249841e-03   p_cons 2.060317e-04   p_joint 3.873016e-05

Joint ci ratio: 3.534476e-01	ci left: 3.206137e-05	ci right 4.609735e-05	k: 122	n:3160000
Cons ci ratio: 1.535032e-01	ci left: 1.904907e-04	ci right 2.224623e-04	k: 651	n:3160000
KS ci ratio: 2.282318e-02	ci left: 9.143483e-03	ci right 9.354886e-03	k: 29226	n:3160000
MFAP1   3160000 perm   5003 sec   (632 perm/sec)   p_kst 9.248734e-03   p_cons 2.060127e-04   p_joint 3.860759e-05

Joint ci ratio: 3.520195e-01	ci left: 3.224774e-05	ci right 4.629523e-05	k: 123	n:3170000
Cons ci ratio: 1.531512e-01	ci left: 1.907998e-04	ci right 2.227432e-04	k: 654	n:3170000
KS ci ratio: 2.279166e-02	ci left: 9.140046e-03	ci right 9.351073e-03	k: 29307	n:3170000
MFAP1   3170000 perm   5033 sec   (630 perm/sec)   p_kst 9.245110e-03   p_cons 2.063091e-04   p_joint 3.880126e-05

Joint ci ratio: 3.492144e-01	ci left: 3.271988e-05	ci right 4.683374e-05	k: 125	n:3180000
Cons ci ratio: 1.525699e-01	ci left: 1.917120e-04	ci right 2.236751e-04	k: 659	n:3180000
KS ci ratio: 2.275714e-02	ci left: 9.139131e-03	ci right 9.349814e-03	k: 29396	n:3180000
MFAP1   3180000 perm   5062 sec   (628 perm/sec)   p_kst 9.244025e-03   p_cons 2.072327e-04   p_joint 3.930818e-05

Joint ci ratio: 3.478368e-01	ci left: 3.290335e-05	ci right 4.702774e-05	k: 126	n:3190000
Cons ci ratio: 1.524545e-01	ci left: 1.914125e-04	ci right 2.232994e-04	k: 660	n:3190000
KS ci ratio: 2.271851e-02	ci left: 9.141652e-03	ci right 9.352030e-03	k: 29496	n:3190000
MFAP1   3190000 perm   5092 sec   (626 perm/sec)   p_kst 9.246395e-03   p_cons 2.068966e-04   p_joint 3.949843e-05

Joint ci ratio: 3.478368e-01	ci left: 3.280053e-05	ci right 4.688078e-05	k: 126	n:3200000
Cons ci ratio: 1.519953e-01	ci left: 1.920168e-04	ci right 2.238991e-04	k: 664	n:3200000
KS ci ratio: 2.267775e-02	ci left: 9.146021e-03	ci right 9.356118e-03	k: 29602	n:3200000
MFAP1   3200000 perm   5123 sec   (625 perm/sec)   p_kst 9.250625e-03   p_cons 2.075000e-04   p_joint 3.937500e-05

Joint ci ratio: 3.478368e-01	ci left: 3.269835e-05	ci right 4.673473e-05	k: 126	n:3210000
Cons ci ratio: 1.517672e-01	ci left: 1.920180e-04	ci right 2.238484e-04	k: 666	n:3210000
KS ci ratio: 2.264337e-02	ci left: 9.145408e-03	ci right 9.355168e-03	k: 29692	n:3210000
MFAP1   3210000 perm   5153 sec   (623 perm/sec)   p_kst 9.249844e-03   p_cons 2.074766e-04   p_joint 3.925234e-05

Joint ci ratio: 3.451298e-01	ci left: 3.316387e-05	ci right 4.726455e-05	k: 128	n:3220000
Cons ci ratio: 1.513141e-01	ci left: 1.926168e-04	ci right 2.244425e-04	k: 670	n:3220000
KS ci ratio: 2.260416e-02	ci left: 9.148813e-03	ci right 9.358283e-03	k: 29795	n:3220000
MFAP1   3220000 perm   5183 sec   (621 perm/sec)   p_kst 9.253106e-03   p_cons 2.080745e-04   p_joint 3.975155e-05

Joint ci ratio: 3.437998e-01	ci left: 3.334401e-05	ci right 4.745450e-05	k: 129	n:3230000
Cons ci ratio: 1.512015e-01	ci left: 1.923183e-04	ci right 2.240689e-04	k: 671	n:3230000
KS ci ratio: 2.257125e-02	ci left: 9.147271e-03	ci right 9.356397e-03	k: 29882	n:3230000
MFAP1   3230000 perm   5213 sec   (620 perm/sec)   p_kst 9.251393e-03   p_cons 2.077399e-04   p_joint 3.993808e-05

Joint ci ratio: 3.437998e-01	ci left: 3.324110e-05	ci right 4.730803e-05	k: 129	n:3240000
Cons ci ratio: 1.510892e-01	ci left: 1.920217e-04	ci right 2.236976e-04	k: 672	n:3240000
KS ci ratio: 2.253734e-02	ci left: 9.146660e-03	ci right 9.355453e-03	k: 29972	n:3240000
MFAP1   3240000 perm   5243 sec   (618 perm/sec)   p_kst 9.250617e-03   p_cons 2.074074e-04   p_joint 3.981481e-05

Joint ci ratio: 3.437998e-01	ci left: 3.313882e-05	ci right 4.716247e-05	k: 129	n:3250000
Cons ci ratio: 1.510892e-01	ci left: 1.914309e-04	ci right 2.230094e-04	k: 672	n:3250000
KS ci ratio: 2.250397e-02	ci left: 9.145746e-03	ci right 9.354206e-03	k: 30061	n:3250000
MFAP1   3250000 perm   5273 sec   (616 perm/sec)   p_kst 9.249538e-03   p_cons 2.067692e-04   p_joint 3.969231e-05

Joint ci ratio: 3.437998e-01	ci left: 3.303717e-05	ci right 4.701780e-05	k: 129	n:3260000
Cons ci ratio: 1.509771e-01	ci left: 1.911388e-04	ci right 2.226436e-04	k: 673	n:3260000
KS ci ratio: 2.246924e-02	ci left: 9.146059e-03	ci right 9.354200e-03	k: 30154	n:3260000
MFAP1   3260000 perm   5303 sec   (615 perm/sec)   p_kst 9.249693e-03   p_cons 2.064417e-04   p_joint 3.957055e-05

Joint ci ratio: 3.437999e-01	ci left: 3.293614e-05	ci right 4.687401e-05	k: 129	n:3270000
Cons ci ratio: 1.508653e-01	ci left: 1.908485e-04	ci right 2.222801e-04	k: 674	n:3270000
KS ci ratio: 2.243841e-02	ci left: 9.143329e-03	ci right 9.351119e-03	k: 30237	n:3270000
MFAP1   3270000 perm   5334 sec   (613 perm/sec)   p_kst 9.246789e-03   p_cons 2.061162e-04   p_joint 3.944954e-05

Joint ci ratio: 3.437999e-01	ci left: 3.283572e-05	ci right 4.673111e-05	k: 129	n:3280000
Cons ci ratio: 1.507537e-01	ci left: 1.905601e-04	ci right 2.219188e-04	k: 675	n:3280000
KS ci ratio: 2.240436e-02	ci left: 9.143345e-03	ci right 9.350816e-03	k: 30329	n:3280000
MFAP1   3280000 perm   5364 sec   (611 perm/sec)   p_kst 9.246646e-03   p_cons 2.057927e-04   p_joint 3.932927e-05

Joint ci ratio: 3.437999e-01	ci left: 3.273592e-05	ci right 4.658907e-05	k: 129	n:3290000
Cons ci ratio: 1.507537e-01	ci left: 1.899808e-04	ci right 2.212443e-04	k: 675	n:3290000
KS ci ratio: 2.237231e-02	ci left: 9.141849e-03	ci right 9.348986e-03	k: 30416	n:3290000
MFAP1   3290000 perm   5395 sec   (610 perm/sec)   p_kst 9.244985e-03   p_cons 2.051672e-04   p_joint 3.920973e-05

Joint ci ratio: 3.424851e-01	ci left: 3.291363e-05	ci right 4.677693e-05	k: 130	n:3300000
Cons ci ratio: 1.503096e-01	ci left: 1.905716e-04	ci right 2.218316e-04	k: 679	n:3300000
KS ci ratio: 2.233708e-02	ci left: 9.143075e-03	ci right 9.349909e-03	k: 30512	n:3300000
MFAP1   3300000 perm   5426 sec   (608 perm/sec)   p_kst 9.246061e-03   p_cons 2.057576e-04   p_joint 3.939394e-05

Joint ci ratio: 3.411854e-01	ci left: 3.309038e-05	ci right 4.696356e-05	k: 131	n:3310000
Cons ci ratio: 1.497600e-01	ci left: 1.914497e-04	ci right 2.227286e-04	k: 684	n:3310000
KS ci ratio: 2.230937e-02	ci left: 9.138285e-03	ci right 9.344750e-03	k: 30588	n:3310000
MFAP1   3310000 perm   5457 sec   (607 perm/sec)   p_kst 9.241088e-03   p_cons 2.066465e-04   p_joint 3.957704e-05

Joint ci ratio: 3.411854e-01	ci left: 3.299071e-05	ci right 4.682211e-05	k: 131	n:3320000
Cons ci ratio: 1.496508e-01	ci left: 1.911630e-04	ci right 2.223702e-04	k: 685	n:3320000
KS ci ratio: 2.227297e-02	ci left: 9.140713e-03	ci right 9.346892e-03	k: 30688	n:3320000
MFAP1   3320000 perm   5488 sec   (605 perm/sec)   p_kst 9.243373e-03   p_cons 2.063253e-04   p_joint 3.945783e-05

Joint ci ratio: 3.411854e-01	ci left: 3.289164e-05	ci right 4.668150e-05	k: 131	n:3330000
Cons ci ratio: 1.495419e-01	ci left: 1.908780e-04	ci right 2.220140e-04	k: 686	n:3330000
KS ci ratio: 2.224258e-02	ci left: 9.138348e-03	ci right 9.344189e-03	k: 30772	n:3330000
MFAP1   3330000 perm   5519 sec   (603 perm/sec)   p_kst 9.240841e-03   p_cons 2.060060e-04   p_joint 3.933934e-05

Joint ci ratio: 3.399003e-01	ci left: 3.306696e-05	ci right 4.686664e-05	k: 132	n:3340000
Cons ci ratio: 1.491084e-01	ci left: 1.914594e-04	ci right 2.225916e-04	k: 690	n:3340000
KS ci ratio: 2.221521e-02	ci left: 9.133615e-03	ci right 9.339093e-03	k: 30848	n:3340000
MFAP1   3340000 perm   5550 sec   (602 perm/sec)   p_kst 9.235928e-03   p_cons 2.065868e-04   p_joint 3.952096e-05

Joint ci ratio: 3.386296e-01	ci left: 3.324133e-05	ci right 4.705058e-05	k: 133	n:3350000
Cons ci ratio: 1.487857e-01	ci left: 1.917500e-04	ci right 2.228560e-04	k: 693	n:3350000
KS ci ratio: 2.218325e-02	ci left: 9.132770e-03	ci right 9.337930e-03	k: 30937	n:3350000
MFAP1   3350000 perm   5580 sec   (600 perm/sec)   p_kst 9.234925e-03   p_cons 2.068657e-04   p_joint 3.970149e-05

Joint ci ratio: 3.386296e-01	ci left: 3.314240e-05	ci right 4.691055e-05	k: 133	n:3360000
Cons ci ratio: 1.487858e-01	ci left: 1.911793e-04	ci right 2.221927e-04	k: 693	n:3360000
KS ci ratio: 2.214818e-02	ci left: 9.134595e-03	ci right 9.339467e-03	k: 31035	n:3360000
MFAP1   3360000 perm   5612 sec   (599 perm/sec)   p_kst 9.236607e-03   p_cons 2.062500e-04   p_joint 3.958333e-05

Joint ci ratio: 3.373731e-01	ci left: 3.331561e-05	ci right 4.709318e-05	k: 134	n:3370000
Cons ci ratio: 1.484652e-01	ci left: 1.914691e-04	ci right 2.224567e-04	k: 696	n:3370000
KS ci ratio: 2.211435e-02	ci left: 9.135523e-03	ci right 9.340099e-03	k: 31130	n:3370000
MFAP1   3370000 perm   5643 sec   (597 perm/sec)   p_kst 9.237389e-03   p_cons 2.065282e-04   p_joint 3.976261e-05

Joint ci ratio: 3.349014e-01	ci left: 3.375882e-05	ci right 4.759532e-05	k: 136	n:3380000
Cons ci ratio: 1.479355e-01	ci left: 1.923271e-04	ci right 2.233326e-04	k: 701	n:3380000
KS ci ratio: 2.207889e-02	ci left: 9.137917e-03	ci right 9.342215e-03	k: 31230	n:3380000
MFAP1   3380000 perm   5673 sec   (596 perm/sec)   p_kst 9.239645e-03   p_cons 2.073964e-04   p_joint 4.023669e-05

Joint ci ratio: 3.349014e-01	ci left: 3.365924e-05	ci right 4.745492e-05	k: 136	n:3390000
Cons ci ratio: 1.477252e-01	ci left: 1.923279e-04	ci right 2.232856e-04	k: 703	n:3390000
KS ci ratio: 2.204254e-02	ci left: 9.141178e-03	ci right 9.345208e-03	k: 31333	n:3390000
MFAP1   3390000 perm   5704 sec   (594 perm/sec)   p_kst 9.242773e-03   p_cons 2.073746e-04   p_joint 4.011799e-05

Joint ci ratio: 3.349014e-01	ci left: 3.356024e-05	ci right 4.731535e-05	k: 136	n:3400000
Cons ci ratio: 1.476204e-01	ci left: 1.920455e-04	ci right 2.229339e-04	k: 704	n:3400000
KS ci ratio: 2.201061e-02	ci left: 9.140909e-03	ci right 9.344634e-03	k: 31424	n:3400000
MFAP1   3400000 perm   5735 sec   (593 perm/sec)   p_kst 9.242353e-03   p_cons 2.070588e-04   p_joint 4.000000e-05

Joint ci ratio: 3.336858e-01	ci left: 3.373047e-05	ci right 4.749437e-05	k: 137	n:3410000
Cons ci ratio: 1.473073e-01	ci left: 1.923296e-04	ci right 2.231923e-04	k: 707	n:3410000
KS ci ratio: 2.197424e-02	ci left: 9.144434e-03	ci right 9.347896e-03	k: 31528	n:3410000
MFAP1   3410000 perm   5766 sec   (591 perm/sec)   p_kst 9.245748e-03   p_cons 2.073314e-04   p_joint 4.017595e-05

Joint ci ratio: 3.324833e-01	ci left: 3.389979e-05	ci right 4.767226e-05	k: 138	n:3420000
Cons ci ratio: 1.472034e-01	ci left: 1.920489e-04	ci right 2.228429e-04	k: 708	n:3420000
KS ci ratio: 2.193840e-02	ci left: 9.147648e-03	ci right 9.350845e-03	k: 31631	n:3420000
MFAP1   3420000 perm   5798 sec   (590 perm/sec)   p_kst 9.248830e-03   p_cons 2.070175e-04   p_joint 4.035088e-05

Joint ci ratio: 3.324833e-01	ci left: 3.380095e-05	ci right 4.753328e-05	k: 138	n:3430000
Cons ci ratio: 1.472035e-01	ci left: 1.914889e-04	ci right 2.221932e-04	k: 708	n:3430000
KS ci ratio: 2.191075e-02	ci left: 9.144174e-03	ci right 9.347035e-03	k: 31711	n:3430000
MFAP1   3430000 perm   5829 sec   (588 perm/sec)   p_kst 9.245190e-03   p_cons 2.064140e-04   p_joint 4.023324e-05

Joint ci ratio: 3.312937e-01	ci left: 3.396917e-05	ci right 4.770993e-05	k: 139	n:3440000
Cons ci ratio: 1.470998e-01	ci left: 1.912123e-04	ci right 2.218487e-04	k: 709	n:3440000
KS ci ratio: 2.188008e-02	ci left: 9.143322e-03	ci right 9.345877e-03	k: 31800	n:3440000
MFAP1   3440000 perm   5861 sec   (587 perm/sec)   p_kst 9.244186e-03   p_cons 2.061047e-04   p_joint 4.040698e-05

Joint ci ratio: 3.301168e-01	ci left: 3.413650e-05	ci right 4.788547e-05	k: 140	n:3450000
Cons ci ratio: 1.470998e-01	ci left: 1.906580e-04	ci right 2.212056e-04	k: 709	n:3450000
KS ci ratio: 2.184850e-02	ci left: 9.143341e-03	ci right 9.345600e-03	k: 31892	n:3450000
MFAP1   3450000 perm   5893 sec   (585 perm/sec)   p_kst 9.244058e-03   p_cons 2.055072e-04   p_joint 4.057971e-05

Joint ci ratio: 3.289523e-01	ci left: 3.430295e-05	ci right 4.805992e-05	k: 141	n:3460000
Cons ci ratio: 1.467900e-01	ci left: 1.909422e-04	ci right 2.214652e-04	k: 712	n:3460000
KS ci ratio: 2.181981e-02	ci left: 9.141060e-03	ci right 9.343000e-03	k: 31976	n:3460000
MFAP1   3460000 perm   5924 sec   (584 perm/sec)   p_kst 9.241618e-03   p_cons 2.057803e-04   p_joint 4.075145e-05

Joint ci ratio: 3.266598e-01	ci left: 3.473304e-05	ci right 4.854505e-05	k: 143	n:3470000
Cons ci ratio: 1.460746e-01	ci left: 1.923353e-04	ci right 2.229181e-04	k: 719	n:3470000
KS ci ratio: 2.178815e-02	ci left: 9.141372e-03	ci right 9.343022e-03	k: 32069	n:3470000
MFAP1   3470000 perm   5956 sec   (583 perm/sec)   p_kst 9.241787e-03   p_cons 2.072046e-04   p_joint 4.121037e-05

Joint ci ratio: 3.266599e-01	ci left: 3.463323e-05	ci right 4.840555e-05	k: 143	n:3480000
Cons ci ratio: 1.459733e-01	ci left: 1.920595e-04	ci right 2.225754e-04	k: 720	n:3480000
KS ci ratio: 2.176072e-02	ci left: 9.138253e-03	ci right 9.339577e-03	k: 32150	n:3480000
MFAP1   3480000 perm   5988 sec   (581 perm/sec)   p_kst 9.238506e-03   p_cons 2.068966e-04   p_joint 4.109195e-05

Joint ci ratio: 3.266599e-01	ci left: 3.453400e-05	ci right 4.826685e-05	k: 143	n:3490000
Cons ci ratio: 1.459733e-01	ci left: 1.915092e-04	ci right 2.219377e-04	k: 720	n:3490000
KS ci ratio: 2.172863e-02	ci left: 9.139141e-03	ci right 9.340184e-03	k: 32245	n:3490000
MFAP1   3490000 perm   6021 sec   (580 perm/sec)   p_kst 9.239255e-03   p_cons 2.063037e-04   p_joint 4.097421e-05

Joint ci ratio: 3.266599e-01	ci left: 3.443533e-05	ci right 4.812895e-05	k: 143	n:3500000
Cons ci ratio: 1.459734e-01	ci left: 1.909620e-04	ci right 2.213036e-04	k: 720	n:3500000
KS ci ratio: 2.170109e-02	ci left: 9.136331e-03	ci right 9.337054e-03	k: 32327	n:3500000
MFAP1   3500000 perm   6053 sec   (578 perm/sec)   p_kst 9.236286e-03   p_cons 2.057143e-04   p_joint 4.085714e-05

Joint ci ratio: 3.266599e-01	ci left: 3.433722e-05	ci right 4.799183e-05	k: 143	n:3510000
Cons ci ratio: 1.458723e-01	ci left: 1.906924e-04	ci right 2.209684e-04	k: 721	n:3510000
KS ci ratio: 2.166826e-02	ci left: 9.138070e-03	ci right 9.338524e-03	k: 32425	n:3510000
MFAP1   3510000 perm   6085 sec   (577 perm/sec)   p_kst 9.237892e-03   p_cons 2.054131e-04   p_joint 4.074074e-05

Joint ci ratio: 3.266599e-01	ci left: 3.423967e-05	ci right 4.785549e-05	k: 143	n:3520000
Cons ci ratio: 1.458723e-01	ci left: 1.901507e-04	ci right 2.203406e-04	k: 721	n:3520000
KS ci ratio: 2.163792e-02	ci left: 9.137822e-03	ci right 9.337987e-03	k: 32516	n:3520000
MFAP1   3520000 perm   6118 sec   (575 perm/sec)   p_kst 9.237500e-03   p_cons 2.048295e-04   p_joint 4.062500e-05

Joint ci ratio: 3.266600e-01	ci left: 3.414267e-05	ci right 4.771992e-05	k: 143	n:3530000
Cons ci ratio: 1.457714e-01	ci left: 1.898850e-04	ci right 2.200100e-04	k: 722	n:3530000
KS ci ratio: 2.160704e-02	ci left: 9.138139e-03	ci right 9.338021e-03	k: 32609	n:3530000
MFAP1   3530000 perm   6153 sec   (574 perm/sec)   p_kst 9.237677e-03   p_cons 2.045326e-04   p_joint 4.050992e-05

Joint ci ratio: 3.266600e-01	ci left: 3.404623e-05	ci right 4.758512e-05	k: 143	n:3540000
Cons ci ratio: 1.455702e-01	ci left: 1.898929e-04	ci right 2.199741e-04	k: 724	n:3540000
KS ci ratio: 2.157729e-02	ci left: 9.137611e-03	ci right 9.337204e-03	k: 32699	n:3540000
MFAP1   3540000 perm   6186 sec   (572 perm/sec)   p_kst 9.237006e-03   p_cons 2.045198e-04   p_joint 4.039548e-05

Joint ci ratio: 3.266600e-01	ci left: 3.395032e-05	ci right 4.745108e-05	k: 143	n:3550000
Cons ci ratio: 1.454699e-01	ci left: 1.896295e-04	ci right 2.196464e-04	k: 725	n:3550000
KS ci ratio: 2.154601e-02	ci left: 9.138488e-03	ci right 9.337807e-03	k: 32794	n:3550000
MFAP1   3550000 perm   6218 sec   (571 perm/sec)   p_kst 9.237746e-03   p_cons 2.042254e-04   p_joint 4.028169e-05

Joint ci ratio: 3.266600e-01	ci left: 3.385495e-05	ci right 4.731779e-05	k: 143	n:3560000
Cons ci ratio: 1.454700e-01	ci left: 1.890968e-04	ci right 2.190294e-04	k: 725	n:3560000
KS ci ratio: 2.151387e-02	ci left: 9.140198e-03	ci right 9.339253e-03	k: 32892	n:3560000
MFAP1   3560000 perm   6251 sec   (570 perm/sec)   p_kst 9.239326e-03   p_cons 2.036517e-04   p_joint 4.016854e-05

Joint ci ratio: 3.244148e-01	ci left: 3.427457e-05	ci right 4.779109e-05	k: 145	n:3570000
Cons ci ratio: 1.450709e-01	ci left: 1.896468e-04	ci right 2.195770e-04	k: 729	n:3570000
KS ci ratio: 2.148911e-02	ci left: 9.135769e-03	ci right 9.334496e-03	k: 32968	n:3570000
MFAP1   3570000 perm   6284 sec   (568 perm/sec)   p_kst 9.234734e-03   p_cons 2.042017e-04   p_joint 4.061625e-05

Joint ci ratio: 3.244148e-01	ci left: 3.417883e-05	ci right 4.765760e-05	k: 145	n:3580000
Cons ci ratio: 1.449716e-01	ci left: 1.893863e-04	ci right 2.192531e-04	k: 730	n:3580000
KS ci ratio: 2.145854e-02	ci left: 9.136366e-03	ci right 9.334820e-03	k: 33062	n:3580000
MFAP1   3580000 perm   6319 sec   (567 perm/sec)   p_kst 9.235196e-03   p_cons 2.039106e-04   p_joint 4.050279e-05

Joint ci ratio: 3.244149e-01	ci left: 3.408363e-05	ci right 4.752485e-05	k: 145	n:3590000
Cons ci ratio: 1.447737e-01	ci left: 1.893957e-04	ci right 2.192197e-04	k: 732	n:3590000
KS ci ratio: 2.143266e-02	ci left: 9.133081e-03	ci right 9.331221e-03	k: 33142	n:3590000
MFAP1   3590000 perm   6352 sec   (565 perm/sec)   p_kst 9.231755e-03   p_cons 2.038997e-04   p_joint 4.038997e-05

Joint ci ratio: 3.244149e-01	ci left: 3.398895e-05	ci right 4.739283e-05	k: 145	n:3600000
Cons ci ratio: 1.443803e-01	ci left: 1.899405e-04	ci right 2.197620e-04	k: 736	n:3600000
KS ci ratio: 2.140330e-02	ci left: 9.132854e-03	ci right 9.330714e-03	k: 33233	n:3600000
MFAP1   3600000 perm   6386 sec   (564 perm/sec)   p_kst 9.231389e-03   p_cons 2.044444e-04   p_joint 4.027778e-05

Joint ci ratio: 3.222154e-01	ci left: 3.440386e-05	ci right 4.786037e-05	k: 147	n:3610000
Cons ci ratio: 1.438929e-01	ci left: 1.907494e-04	ci right 2.205882e-04	k: 741	n:3610000
KS ci ratio: 2.137439e-02	ci left: 9.132353e-03	ci right 9.329932e-03	k: 33323	n:3610000
MFAP1   3610000 perm   6419 sec   (562 perm/sec)   p_kst 9.230748e-03   p_cons 2.052632e-04   p_joint 4.072022e-05

Joint ci ratio: 3.211323e-01	ci left: 3.456276e-05	ci right 4.802663e-05	k: 148	n:3620000
Cons ci ratio: 1.436994e-01	ci left: 1.907551e-04	ci right 2.205512e-04	k: 743	n:3620000
KS ci ratio: 2.133914e-02	ci left: 9.137350e-03	ci right 9.334707e-03	k: 33433	n:3620000
MFAP1   3620000 perm   6452 sec   (561 perm/sec)   p_kst 9.235635e-03   p_cons 2.052486e-04   p_joint 4.088398e-05

Joint ci ratio: 3.211323e-01	ci left: 3.446755e-05	ci right 4.789433e-05	k: 148	n:3630000
Cons ci ratio: 1.434105e-01	ci left: 1.910264e-04	ci right 2.207997e-04	k: 746	n:3630000
KS ci ratio: 2.131145e-02	ci left: 9.136017e-03	ci right 9.333086e-03	k: 33520	n:3630000
MFAP1   3630000 perm   6486 sec   (560 perm/sec)   p_kst 9.234160e-03   p_cons 2.055096e-04   p_joint 4.077135e-05

Joint ci ratio: 3.211323e-01	ci left: 3.437286e-05	ci right 4.776275e-05	k: 148	n:3640000
Cons ci ratio: 1.433146e-01	ci left: 1.907665e-04	ci right 2.204777e-04	k: 747	n:3640000
KS ci ratio: 2.128514e-02	ci left: 9.133599e-03	ci right 9.330370e-03	k: 33603	n:3640000
MFAP1   3640000 perm   6520 sec   (558 perm/sec)   p_kst 9.231593e-03   p_cons 2.052198e-04   p_joint 4.065934e-05

Joint ci ratio: 3.211323e-01	ci left: 3.427868e-05	ci right 4.763190e-05	k: 148	n:3650000
Cons ci ratio: 1.431234e-01	ci left: 1.907721e-04	ci right 2.204412e-04	k: 749	n:3650000
KS ci ratio: 2.125416e-02	ci left: 9.135282e-03	ci right 9.331799e-03	k: 33701	n:3650000
MFAP1   3650000 perm   6553 sec   (557 perm/sec)   p_kst 9.233151e-03   p_cons 2.052055e-04   p_joint 4.054795e-05

Joint ci ratio: 3.200601e-01	ci left: 3.443627e-05	ci right 4.779689e-05	k: 149	n:3660000
Cons ci ratio: 1.427433e-01	ci left: 1.913047e-04	ci right 2.209709e-04	k: 753	n:3660000
KS ci ratio: 2.122457e-02	ci left: 9.135869e-03	ci right 9.332122e-03	k: 33795	n:3660000
MFAP1   3660000 perm   6588 sec   (556 perm/sec)   p_kst 9.233607e-03   p_cons 2.057377e-04   p_joint 4.071038e-05

Joint ci ratio: 3.200601e-01	ci left: 3.434243e-05	ci right 4.766665e-05	k: 149	n:3670000
Cons ci ratio: 1.426487e-01	ci left: 1.910462e-04	ci right 2.206510e-04	k: 754	n:3670000
KS ci ratio: 2.119606e-02	ci left: 9.135640e-03	ci right 9.331621e-03	k: 33886	n:3670000
MFAP1   3670000 perm   6621 sec   (554 perm/sec)   p_kst 9.233243e-03   p_cons 2.054496e-04   p_joint 4.059946e-05

Joint ci ratio: 3.200601e-01	ci left: 3.424911e-05	ci right 4.753712e-05	k: 149	n:3680000
Cons ci ratio: 1.425544e-01	ci left: 1.907891e-04	ci right 2.203328e-04	k: 755	n:3680000
KS ci ratio: 2.117364e-02	ci left: 9.130276e-03	ci right 9.325932e-03	k: 33958	n:3680000
MFAP1   3680000 perm   6655 sec   (553 perm/sec)   p_kst 9.227717e-03   p_cons 2.051630e-04   p_joint 4.048913e-05

Joint ci ratio: 3.200601e-01	ci left: 3.415630e-05	ci right 4.740830e-05	k: 149	n:3690000
Cons ci ratio: 1.424602e-01	ci left: 1.905334e-04	ci right 2.200164e-04	k: 756	n:3690000
KS ci ratio: 2.114376e-02	ci left: 9.131411e-03	ci right 9.326813e-03	k: 34054	n:3690000
MFAP1   3690000 perm   6689 sec   (552 perm/sec)   p_kst 9.228726e-03   p_cons 2.048780e-04   p_joint 4.037940e-05

Joint ci ratio: 3.189985e-01	ci left: 3.431258e-05	ci right 4.757204e-05	k: 150	n:3700000
Cons ci ratio: 1.422724e-01	ci left: 1.905397e-04	ci right 2.199815e-04	k: 758	n:3700000
KS ci ratio: 2.111775e-02	ci left: 9.129315e-03	ci right 9.324428e-03	k: 34138	n:3700000
MFAP1   3700000 perm   6723 sec   (550 perm/sec)   p_kst 9.226486e-03   p_cons 2.048649e-04   p_joint 4.054054e-05

Joint ci ratio: 3.179474e-01	ci left: 3.446809e-05	ci right 4.773483e-05	k: 151	n:3710000
Cons ci ratio: 1.421788e-01	ci left: 1.902861e-04	ci right 2.196677e-04	k: 759	n:3710000
KS ci ratio: 2.108625e-02	ci left: 9.132056e-03	ci right 9.326933e-03	k: 34240	n:3710000
MFAP1   3710000 perm   6757 sec   (549 perm/sec)   p_kst 9.229111e-03   p_cons 2.045822e-04   p_joint 4.070081e-05

Joint ci ratio: 3.179474e-01	ci left: 3.437543e-05	ci right 4.760651e-05	k: 151	n:3720000
Cons ci ratio: 1.418990e-01	ci left: 1.905523e-04	ci right 2.199123e-04	k: 762	n:3720000
KS ci ratio: 2.105829e-02	ci left: 9.131841e-03	ci right 9.326451e-03	k: 34331	n:3720000
MFAP1   3720000 perm   6791 sec   (548 perm/sec)   p_kst 9.228763e-03   p_cons 2.048387e-04   p_joint 4.059140e-05

Joint ci ratio: 3.158760e-01	ci left: 3.477683e-05	ci right 4.805757e-05	k: 153	n:3730000
Cons ci ratio: 1.414362e-01	ci left: 1.913345e-04	ci right 2.207107e-04	k: 767	n:3730000
KS ci ratio: 2.103137e-02	ci left: 9.130827e-03	ci right 9.325164e-03	k: 34419	n:3730000
MFAP1   3730000 perm   6825 sec   (546 perm/sec)   p_kst 9.227614e-03   p_cons 2.056300e-04   p_joint 4.101877e-05

Joint ci ratio: 3.158761e-01	ci left: 3.468384e-05	ci right 4.792908e-05	k: 153	n:3740000
Cons ci ratio: 1.414363e-01	ci left: 1.908229e-04	ci right 2.201205e-04	k: 767	n:3740000
KS ci ratio: 2.100178e-02	ci left: 9.132212e-03	ci right 9.326303e-03	k: 34516	n:3740000
MFAP1   3740000 perm   6860 sec   (545 perm/sec)   p_kst 9.228877e-03   p_cons 2.050802e-04   p_joint 4.090909e-05

Joint ci ratio: 3.148554e-01	ci left: 3.483691e-05	ci right 4.808897e-05	k: 154	n:3750000
Cons ci ratio: 1.409780e-01	ci left: 1.916002e-04	ci right 2.209139e-04	k: 772	n:3750000
KS ci ratio: 2.097048e-02	ci left: 9.135182e-03	ci right 9.329043e-03	k: 34619	n:3750000
MFAP1   3750000 perm   6894 sec   (544 perm/sec)   p_kst 9.231733e-03   p_cons 2.058667e-04   p_joint 4.106667e-05

Joint ci ratio: 3.138446e-01	ci left: 3.498924e-05	ci right 4.824794e-05	k: 155	n:3760000
Cons ci ratio: 1.406147e-01	ci left: 1.921170e-04	ci right 2.214277e-04	k: 776	n:3760000
KS ci ratio: 2.094542e-02	ci left: 9.132845e-03	ci right 9.326422e-03	k: 34702	n:3760000
MFAP1   3760000 perm   6929 sec   (543 perm/sec)   p_kst 9.229255e-03   p_cons 2.063830e-04   p_joint 4.122340e-05

Joint ci ratio: 3.128435e-01	ci left: 3.514083e-05	ci right 4.840601e-05	k: 156	n:3770000
Cons ci ratio: 1.404340e-01	ci left: 1.921193e-04	ci right 2.213895e-04	k: 778	n:3770000
KS ci ratio: 2.091528e-02	ci left: 9.135007e-03	ci right 9.328347e-03	k: 34802	n:3770000
MFAP1   3770000 perm   6964 sec   (541 perm/sec)   p_kst 9.231300e-03   p_cons 2.063660e-04   p_joint 4.137931e-05

Joint ci ratio: 3.222157e-01	ci left: 3.285659e-05	ci right 4.570793e-05	k: 147	n:3780000
Cons ci ratio: 1.403440e-01	ci left: 1.918663e-04	ci right 2.210776e-04	k: 779	n:3780000
KS ci ratio: 2.088769e-02	ci left: 9.135052e-03	ci right 9.328135e-03	k: 34894	n:3780000
MFAP1   3780000 perm   6999 sec   (540 perm/sec)   p_kst 9.231217e-03   p_cons 2.060847e-04   p_joint 3.888889e-05

Joint ci ratio: 3.211326e-01	ci left: 3.301245e-05	ci right 4.587241e-05	k: 148	n:3790000
Cons ci ratio: 1.401644e-01	ci left: 1.918692e-04	ci right 2.210405e-04	k: 781	n:3790000
KS ci ratio: 2.085240e-02	ci left: 9.141921e-03	ci right 9.334819e-03	k: 35012	n:3790000
MFAP1   3790000 perm   7034 sec   (539 perm/sec)   p_kst 9.237995e-03   p_cons 2.060686e-04   p_joint 3.905013e-05

Joint ci ratio: 3.211326e-01	ci left: 3.292557e-05	ci right 4.575170e-05	k: 148	n:3800000
Cons ci ratio: 1.399855e-01	ci left: 1.918722e-04	ci right 2.210036e-04	k: 783	n:3800000
KS ci ratio: 2.082146e-02	ci left: 9.145089e-03	ci right 9.337765e-03	k: 35116	n:3800000
MFAP1   3800000 perm   7069 sec   (538 perm/sec)   p_kst 9.241053e-03   p_cons 2.060526e-04   p_joint 3.894737e-05

Joint ci ratio: 3.189987e-01	ci left: 3.332192e-05	ci right 4.619857e-05	k: 150	n:3810000
Cons ci ratio: 1.396298e-01	ci left: 1.923817e-04	ci right 2.215101e-04	k: 787	n:3810000
KS ci ratio: 2.078799e-02	ci left: 9.150591e-03	ci right 9.343069e-03	k: 35229	n:3810000
MFAP1   3810000 perm   7104 sec   (536 perm/sec)   p_kst 9.246457e-03   p_cons 2.065617e-04   p_joint 3.937008e-05

Joint ci ratio: 3.189987e-01	ci left: 3.323469e-05	ci right 4.607764e-05	k: 150	n:3820000
Cons ci ratio: 1.396298e-01	ci left: 1.918781e-04	ci right 2.209302e-04	k: 787	n:3820000
KS ci ratio: 2.076268e-02	ci left: 9.149033e-03	ci right 9.341241e-03	k: 35315	n:3820000
MFAP1   3820000 perm   7140 sec   (535 perm/sec)   p_kst 9.244764e-03   p_cons 2.060209e-04   p_joint 3.926702e-05

Joint ci ratio: 3.179476e-01	ci left: 3.338815e-05	ci right 4.623922e-05	k: 151	n:3830000
Cons ci ratio: 1.394529e-01	ci left: 1.918811e-04	ci right 2.208938e-04	k: 789	n:3830000
KS ci ratio: 2.073953e-02	ci left: 9.145665e-03	ci right 9.337585e-03	k: 35394	n:3830000
MFAP1   3830000 perm   7175 sec   (534 perm/sec)   p_kst 9.241253e-03   p_cons 2.060052e-04   p_joint 3.942559e-05

Joint ci ratio: 3.179477e-01	ci left: 3.330120e-05	ci right 4.611881e-05	k: 151	n:3840000
Cons ci ratio: 1.391012e-01	ci left: 1.923868e-04	ci right 2.213965e-04	k: 793	n:3840000
KS ci ratio: 2.071528e-02	ci left: 9.143350e-03	ci right 9.334995e-03	k: 35477	n:3840000
MFAP1   3840000 perm   7211 sec   (533 perm/sec)   p_kst 9.238802e-03   p_cons 2.065104e-04   p_joint 3.932292e-05

Joint ci ratio: 3.411863e-01	ci left: 2.844912e-05	ci right 4.037649e-05	k: 131	n:3850000
Cons ci ratio: 1.389263e-01	ci left: 1.923885e-04	ci right 2.213590e-04	k: 795	n:3850000
KS ci ratio: 2.068730e-02	ci left: 9.144407e-03	ci right 9.335812e-03	k: 35573	n:3850000
MFAP1   3850000 perm   7247 sec   (531 perm/sec)   p_kst 9.239740e-03   p_cons 2.064935e-04   p_joint 3.402597e-05

Joint ci ratio: 3.158763e-01	ci left: 3.360558e-05	ci right 4.643906e-05	k: 153	n:3860000
Cons ci ratio: 1.387521e-01	ci left: 1.923902e-04	ci right 2.213216e-04	k: 797	n:3860000
KS ci ratio: 2.065944e-02	ci left: 9.145459e-03	ci right 9.336625e-03	k: 35669	n:3860000
MFAP1   3860000 perm   7282 sec   (530 perm/sec)   p_kst 9.240674e-03   p_cons 2.064767e-04   p_joint 3.963731e-05

Joint ci ratio: 3.158763e-01	ci left: 3.351875e-05	ci right 4.631906e-05	k: 153	n:3870000
Cons ci ratio: 1.385786e-01	ci left: 1.923919e-04	ci right 2.212844e-04	k: 799	n:3870000
KS ci ratio: 2.063226e-02	ci left: 9.145992e-03	ci right 9.336914e-03	k: 35763	n:3870000
MFAP1   3870000 perm   7318 sec   (529 perm/sec)   p_kst 9.241085e-03   p_cons 2.064599e-04   p_joint 3.953488e-05

Joint ci ratio: 3.148556e-01	ci left: 3.366969e-05	ci right 4.647775e-05	k: 154	n:3880000
Cons ci ratio: 1.384057e-01	ci left: 1.923937e-04	ci right 2.212474e-04	k: 801	n:3880000
KS ci ratio: 2.059969e-02	ci left: 9.151393e-03	ci right 9.342124e-03	k: 35876	n:3880000
MFAP1   3880000 perm   7353 sec   (528 perm/sec)   p_kst 9.246392e-03   p_cons 2.064433e-04   p_joint 3.969072e-05

Joint ci ratio: 3.148557e-01	ci left: 3.358314e-05	ci right 4.635827e-05	k: 154	n:3890000
Cons ci ratio: 1.384057e-01	ci left: 1.918991e-04	ci right 2.206787e-04	k: 801	n:3890000
KS ci ratio: 2.057420e-02	ci left: 9.150629e-03	ci right 9.341105e-03	k: 35965	n:3890000
MFAP1   3890000 perm   7389 sec   (526 perm/sec)   p_kst 9.245501e-03   p_cons 2.059126e-04   p_joint 3.958869e-05

Joint ci ratio: 3.148557e-01	ci left: 3.349703e-05	ci right 4.623940e-05	k: 154	n:3900000
Cons ci ratio: 1.381476e-01	ci left: 1.921497e-04	ci right 2.209087e-04	k: 804	n:3900000
KS ci ratio: 2.054794e-02	ci left: 9.150635e-03	ci right 9.340864e-03	k: 36057	n:3900000
MFAP1   3900000 perm   7426 sec   (525 perm/sec)   p_kst 9.245385e-03   p_cons 2.061538e-04   p_joint 3.948718e-05

Joint ci ratio: 3.138449e-01	ci left: 3.364694e-05	ci right 4.639701e-05	k: 155	n:3910000
Cons ci ratio: 1.379763e-01	ci left: 1.921521e-04	ci right 2.208728e-04	k: 806	n:3910000
KS ci ratio: 2.052607e-02	ci left: 9.146823e-03	ci right 9.336769e-03	k: 36134	n:3910000
MFAP1   3910000 perm   7462 sec   (524 perm/sec)   p_kst 9.241432e-03   p_cons 2.061381e-04   p_joint 3.964194e-05

Joint ci ratio: 3.138449e-01	ci left: 3.356110e-05	ci right 4.627865e-05	k: 155	n:3920000
Cons ci ratio: 1.378056e-01	ci left: 1.921545e-04	ci right 2.208372e-04	k: 808	n:3920000
KS ci ratio: 2.049914e-02	ci left: 9.147600e-03	ci right 9.337310e-03	k: 36229	n:3920000
MFAP1   3920000 perm   7498 sec   (523 perm/sec)   p_kst 9.242092e-03   p_cons 2.061224e-04   p_joint 3.954082e-05

Joint ci ratio: 3.128438e-01	ci left: 3.371015e-05	ci right 4.643529e-05	k: 156	n:3930000
Cons ci ratio: 1.375508e-01	ci left: 1.924026e-04	ci right 2.210649e-04	k: 811	n:3930000
KS ci ratio: 2.047088e-02	ci left: 9.149639e-03	ci right 9.339126e-03	k: 36329	n:3930000
MFAP1   3930000 perm   7533 sec   (522 perm/sec)   p_kst 9.244020e-03   p_cons 2.063613e-04   p_joint 3.969466e-05

Joint ci ratio: 3.128438e-01	ci left: 3.362459e-05	ci right 4.631743e-05	k: 156	n:3940000
Cons ci ratio: 1.374662e-01	ci left: 1.921594e-04	ci right 2.207663e-04	k: 812	n:3940000
KS ci ratio: 2.044388e-02	ci left: 9.150657e-03	ci right 9.339913e-03	k: 36425	n:3940000
MFAP1   3940000 perm   7569 sec   (521 perm/sec)   p_kst 9.244924e-03   p_cons 2.060914e-04   p_joint 3.959391e-05

Joint ci ratio: 3.128438e-01	ci left: 3.353947e-05	ci right 4.620017e-05	k: 156	n:3950000
Cons ci ratio: 1.373818e-01	ci left: 1.919173e-04	ci right 2.204693e-04	k: 813	n:3950000
KS ci ratio: 2.041642e-02	ci left: 9.152174e-03	ci right 9.341204e-03	k: 36523	n:3950000
MFAP1   3950000 perm   7605 sec   (519 perm/sec)   p_kst 9.246329e-03   p_cons 2.058228e-04   p_joint 3.949367e-05

Joint ci ratio: 3.128438e-01	ci left: 3.345477e-05	ci right 4.608350e-05	k: 156	n:3960000
Cons ci ratio: 1.373818e-01	ci left: 1.914327e-04	ci right 2.199126e-04	k: 813	n:3960000
KS ci ratio: 2.038711e-02	ci left: 9.155443e-03	ci right 9.344266e-03	k: 36628	n:3960000
MFAP1   3960000 perm   7642 sec   (518 perm/sec)   p_kst 9.249495e-03   p_cons 2.053030e-04   p_joint 3.939394e-05

Joint ci ratio: 3.128438e-01	ci left: 3.337050e-05	ci right 4.596743e-05	k: 156	n:3970000
Cons ci ratio: 1.371293e-01	ci left: 1.916802e-04	ci right 2.201402e-04	k: 816	n:3970000
KS ci ratio: 2.036603e-02	ci left: 9.151427e-03	ci right 9.339970e-03	k: 36704	n:3970000
MFAP1   3970000 perm   7678 sec   (517 perm/sec)   p_kst 9.245340e-03   p_cons 2.055416e-04   p_joint 3.929471e-05

Joint ci ratio: 3.128438e-01	ci left: 3.328666e-05	ci right 4.585193e-05	k: 156	n:3980000
Cons ci ratio: 1.369618e-01	ci left: 1.916839e-04	ci right 2.201069e-04	k: 818	n:3980000
KS ci ratio: 2.034446e-02	ci left: 9.147932e-03	ci right 9.336200e-03	k: 36782	n:3980000
MFAP1   3980000 perm   7714 sec   (516 perm/sec)   p_kst 9.241709e-03   p_cons 2.055276e-04   p_joint 3.919598e-05

Joint ci ratio: 3.118522e-01	ci left: 3.343422e-05	ci right 4.600722e-05	k: 157	n:3990000
Cons ci ratio: 1.366285e-01	ci left: 1.921717e-04	ci right 2.205920e-04	k: 822	n:3990000
KS ci ratio: 2.032157e-02	ci left: 9.145701e-03	ci right 9.333709e-03	k: 36865	n:3990000
MFAP1   3990000 perm   7751 sec   (515 perm/sec)   p_kst 9.239348e-03   p_cons 2.060150e-04   p_joint 3.934837e-05

Joint ci ratio: 3.118523e-01	ci left: 3.335063e-05	ci right 4.589220e-05	k: 157	n:4000000
Cons ci ratio: 1.366285e-01	ci left: 1.916913e-04	ci right 2.200405e-04	k: 822	n:4000000
KS ci ratio: 2.029682e-02	ci left: 9.145222e-03	ci right 9.332989e-03	k: 36955	n:4000000
MFAP1   4000000 perm   7787 sec   (514 perm/sec)   p_kst 9.238750e-03   p_cons 2.055000e-04   p_joint 3.925000e-05

Joint ci ratio: 3.108700e-01	ci left: 3.349736e-05	ci right 4.604656e-05	k: 158	n:4010000
Cons ci ratio: 1.363802e-01	ci left: 1.919358e-04	ci right 2.202655e-04	k: 825	n:4010000
KS ci ratio: 2.027437e-02	ci left: 9.142761e-03	ci right 9.330268e-03	k: 37037	n:4010000
MFAP1   4010000 perm   7825 sec   (512 perm/sec)   p_kst 9.236160e-03   p_cons 2.057357e-04   p_joint 3.940150e-05

Joint ci ratio: 3.098970e-01	ci left: 3.364341e-05	ci right 4.620008e-05	k: 159	n:4020000
Cons ci ratio: 1.360511e-01	ci left: 1.924195e-04	ci right 2.207464e-04	k: 829	n:4020000
KS ci ratio: 2.025116e-02	ci left: 9.141055e-03	ci right 9.328310e-03	k: 37122	n:4020000
MFAP1   4020000 perm   7862 sec   (511 perm/sec)   p_kst 9.234328e-03   p_cons 2.062189e-04   p_joint 3.955224e-05

Joint ci ratio: 3.098970e-01	ci left: 3.355993e-05	ci right 4.608544e-05	k: 159	n:4030000
Cons ci ratio: 1.359693e-01	ci left: 1.921817e-04	ci right 2.204553e-04	k: 830	n:4030000
KS ci ratio: 2.021926e-02	ci left: 9.147258e-03	ci right 9.334341e-03	k: 37239	n:4030000
MFAP1   4030000 perm   7900 sec   (510 perm/sec)   p_kst 9.240447e-03   p_cons 2.059553e-04   p_joint 3.945409e-05

Joint ci ratio: 3.098970e-01	ci left: 3.347686e-05	ci right 4.597137e-05	k: 159	n:4040000
Cons ci ratio: 1.359693e-01	ci left: 1.917060e-04	ci right 2.199096e-04	k: 830	n:4040000
KS ci ratio: 2.018997e-02	ci left: 9.151214e-03	ci right 9.338104e-03	k: 37347	n:4040000
MFAP1   4040000 perm   7937 sec   (509 perm/sec)   p_kst 9.244307e-03   p_cons 2.054455e-04   p_joint 3.935644e-05

Joint ci ratio: 3.098971e-01	ci left: 3.339420e-05	ci right 4.585786e-05	k: 159	n:4050000
Cons ci ratio: 1.358876e-01	ci left: 1.914712e-04	ci right 2.196219e-04	k: 831	n:4050000
KS ci ratio: 2.016841e-02	ci left: 9.148272e-03	ci right 9.334900e-03	k: 37427	n:4050000
MFAP1   4050000 perm   7975 sec   (508 perm/sec)   p_kst 9.241235e-03   p_cons 2.051852e-04   p_joint 3.925926e-05

Joint ci ratio: 3.098971e-01	ci left: 3.331195e-05	ci right 4.574491e-05	k: 159	n:4060000
Cons ci ratio: 1.356432e-01	ci left: 1.917134e-04	ci right 2.198450e-04	k: 834	n:4060000
KS ci ratio: 2.014882e-02	ci left: 9.143629e-03	ci right 9.329979e-03	k: 37500	n:4060000
MFAP1   4060000 perm   8013 sec   (507 perm/sec)   p_kst 9.236453e-03   p_cons 2.054187e-04   p_joint 3.916256e-05

Joint ci ratio: 3.098971e-01	ci left: 3.323010e-05	ci right 4.563252e-05	k: 159	n:4070000
Cons ci ratio: 1.354002e-01	ci left: 1.919545e-04	ci right 2.200669e-04	k: 837	n:4070000
KS ci ratio: 2.012226e-02	ci left: 9.145365e-03	ci right 9.331501e-03	k: 37599	n:4070000
MFAP1   4070000 perm   8051 sec   (506 perm/sec)   p_kst 9.238084e-03   p_cons 2.056511e-04   p_joint 3.906634e-05

Joint ci ratio: 3.098971e-01	ci left: 3.314866e-05	ci right 4.552067e-05	k: 159	n:4080000
Cons ci ratio: 1.353195e-01	ci left: 1.917208e-04	ci right 2.197809e-04	k: 838	n:4080000
KS ci ratio: 2.009769e-02	ci left: 9.145385e-03	ci right 9.331293e-03	k: 37691	n:4080000
MFAP1   4080000 perm   8088 sec   (504 perm/sec)   p_kst 9.237990e-03   p_cons 2.053922e-04   p_joint 3.897059e-05

Joint ci ratio: 3.098971e-01	ci left: 3.306761e-05	ci right 4.540937e-05	k: 159	n:4090000
Cons ci ratio: 1.351585e-01	ci left: 1.917245e-04	ci right 2.197491e-04	k: 840	n:4090000
KS ci ratio: 2.007213e-02	ci left: 9.146379e-03	ci right 9.332067e-03	k: 37787	n:4090000
MFAP1   4090000 perm   8126 sec   (503 perm/sec)   p_kst 9.238875e-03   p_cons 2.053790e-04   p_joint 3.887531e-05

Joint ci ratio: 3.089332e-01	ci left: 3.321192e-05	ci right 4.556140e-05	k: 160	n:4100000
Cons ci ratio: 1.350782e-01	ci left: 1.914925e-04	ci right 2.194652e-04	k: 841	n:4100000
KS ci ratio: 2.004454e-02	ci left: 9.149310e-03	ci right 9.334799e-03	k: 37891	n:4100000
MFAP1   4100000 perm   8163 sec   (502 perm/sec)   p_kst 9.241707e-03   p_cons 2.051220e-04   p_joint 3.902439e-05

Joint ci ratio: 3.089332e-01	ci left: 3.313111e-05	ci right 4.545054e-05	k: 160	n:4110000
Cons ci ratio: 1.349181e-01	ci left: 1.914968e-04	ci right 2.194343e-04	k: 843	n:4110000
KS ci ratio: 2.001919e-02	ci left: 9.150289e-03	ci right 9.335561e-03	k: 37987	n:4110000
MFAP1   4110000 perm   8201 sec   (501 perm/sec)   p_kst 9.242579e-03   p_cons 2.051095e-04   p_joint 3.892944e-05

Joint ci ratio: 3.089332e-01	ci left: 3.305070e-05	ci right 4.534023e-05	k: 160	n:4120000
Cons ci ratio: 1.347585e-01	ci left: 1.915010e-04	ci right 2.194035e-04	k: 845	n:4120000
KS ci ratio: 1.999817e-02	ci left: 9.147400e-03	ci right 9.332417e-03	k: 38067	n:4120000
MFAP1   4120000 perm   8238 sec   (500 perm/sec)   p_kst 9.239563e-03   p_cons 2.050971e-04   p_joint 3.883495e-05

Joint ci ratio: 3.079782e-01	ci left: 3.319407e-05	ci right 4.549126e-05	k: 161	n:4130000
Cons ci ratio: 1.345995e-01	ci left: 1.915053e-04	ci right 2.193728e-04	k: 847	n:4130000
KS ci ratio: 1.997326e-02	ci left: 9.148139e-03	ci right 9.332938e-03	k: 38162	n:4130000
MFAP1   4130000 perm   8276 sec   (499 perm/sec)   p_kst 9.240194e-03   p_cons 2.050847e-04   p_joint 3.898305e-05

Joint ci ratio: 3.079782e-01	ci left: 3.311389e-05	ci right 4.538138e-05	k: 161	n:4140000
Cons ci ratio: 1.345202e-01	ci left: 1.912761e-04	ci right 2.190926e-04	k: 848	n:4140000
KS ci ratio: 1.995370e-02	ci left: 9.144067e-03	ci right 9.328601e-03	k: 38237	n:4140000
MFAP1   4140000 perm   8314 sec   (498 perm/sec)   p_kst 9.235990e-03   p_cons 2.048309e-04   p_joint 3.888889e-05

Joint ci ratio: 2.954748e-01	ci left: 3.615236e-05	ci right 4.890000e-05	k: 175	n:4150000
Cons ci ratio: 1.342044e-01	ci left: 1.917467e-04	ci right 2.195609e-04	k: 852	n:4150000
KS ci ratio: 1.992922e-02	ci left: 9.144571e-03	ci right 9.328886e-03	k: 38331	n:4150000
MFAP1   4150000 perm   8352 sec   (497 perm/sec)   p_kst 9.236386e-03   p_cons 2.053012e-04   p_joint 4.216867e-05

Joint ci ratio: 2.954748e-01	ci left: 3.606546e-05	ci right 4.878245e-05	k: 175	n:4160000
Cons ci ratio: 1.341259e-01	ci left: 1.915181e-04	ci right 2.192816e-04	k: 853	n:4160000
KS ci ratio: 1.991110e-02	ci left: 9.139332e-03	ci right 9.323372e-03	k: 38401	n:4160000
MFAP1   4160000 perm   8391 sec   (496 perm/sec)   p_kst 9.231010e-03   p_cons 2.050481e-04   p_joint 4.206731e-05

Joint ci ratio: 2.954748e-01	ci left: 3.597897e-05	ci right 4.866547e-05	k: 175	n:4170000
Cons ci ratio: 1.339691e-01	ci left: 1.915223e-04	ci right 2.192514e-04	k: 855	n:4170000
KS ci ratio: 1.988860e-02	ci left: 9.138174e-03	ci right 9.321980e-03	k: 38488	n:4170000
MFAP1   4170000 perm   8429 sec   (495 perm/sec)   p_kst 9.229736e-03   p_cons 2.050360e-04   p_joint 4.196643e-05

Joint ci ratio: 2.954749e-01	ci left: 3.589289e-05	ci right 4.854904e-05	k: 175	n:4180000
Cons ci ratio: 1.338909e-01	ci left: 1.912954e-04	ci right 2.189741e-04	k: 856	n:4180000
KS ci ratio: 1.986903e-02	ci left: 9.134404e-03	ci right 9.317951e-03	k: 38564	n:4180000
MFAP1   4180000 perm   8468 sec   (494 perm/sec)   p_kst 9.225837e-03   p_cons 2.047847e-04   p_joint 4.186603e-05

Joint ci ratio: 2.946390e-01	ci left: 3.602823e-05	ci right 4.868945e-05	k: 176	n:4190000
Cons ci ratio: 1.336572e-01	ci left: 1.915308e-04	ci right 2.191914e-04	k: 859	n:4190000
KS ci ratio: 1.984304e-02	ci left: 9.136589e-03	ci right 9.319937e-03	k: 38665	n:4190000
MFAP1   4190000 perm   8506 sec   (493 perm/sec)   p_kst 9.227924e-03   p_cons 2.050119e-04   p_joint 4.200477e-05

Joint ci ratio: 2.938102e-01	ci left: 3.616297e-05	ci right 4.882914e-05	k: 177	n:4200000
Cons ci ratio: 1.335020e-01	ci left: 1.915351e-04	ci right 2.191616e-04	k: 861	n:4200000
KS ci ratio: 1.981483e-02	ci left: 9.140896e-03	ci right 9.324067e-03	k: 38775	n:4200000
MFAP1   4200000 perm   8544 sec   (492 perm/sec)   p_kst 9.232143e-03   p_cons 2.050000e-04   p_joint 4.214286e-05

Joint ci ratio: 2.938102e-01	ci left: 3.607708e-05	ci right 4.871316e-05	k: 177	n:4210000
Cons ci ratio: 1.335020e-01	ci left: 1.910801e-04	ci right 2.186411e-04	k: 861	n:4210000
KS ci ratio: 1.979291e-02	ci left: 9.139510e-03	ci right 9.322449e-03	k: 38861	n:4210000
MFAP1   4210000 perm   8584 sec   (490 perm/sec)   p_kst 9.230641e-03   p_cons 2.045131e-04   p_joint 4.204276e-05

Joint ci ratio: 2.921733e-01	ci left: 3.643069e-05	ci right 4.910639e-05	k: 179	n:4220000
Cons ci ratio: 1.331933e-01	ci left: 1.915436e-04	ci right 2.191024e-04	k: 865	n:4220000
KS ci ratio: 1.976773e-02	ci left: 9.141196e-03	ci right 9.323933e-03	k: 38960	n:4220000
MFAP1   4220000 perm   8624 sec   (489 perm/sec)   p_kst 9.232227e-03   p_cons 2.049763e-04   p_joint 4.241706e-05

Joint ci ratio: 3.033327e-01	ci left: 3.350073e-05	ci right 4.568821e-05	k: 166	n:4230000
Cons ci ratio: 1.331934e-01	ci left: 1.910908e-04	ci right 2.185845e-04	k: 865	n:4230000
KS ci ratio: 1.974520e-02	ci left: 9.140522e-03	ci right 9.323035e-03	k: 39049	n:4230000
MFAP1   4230000 perm   8663 sec   (488 perm/sec)   p_kst 9.231442e-03   p_cons 2.044917e-04   p_joint 3.924350e-05

Joint ci ratio: 3.024285e-01	ci left: 3.363965e-05	ci right 4.583418e-05	k: 167	n:4240000
Cons ci ratio: 1.328105e-01	ci left: 1.917801e-04	ci right 2.192874e-04	k: 870	n:4240000
KS ci ratio: 1.972224e-02	ci left: 9.140321e-03	ci right 9.322615e-03	k: 39140	n:4240000
MFAP1   4240000 perm   8703 sec   (487 perm/sec)   p_kst 9.231132e-03   p_cons 2.051887e-04   p_joint 3.938679e-05

Joint ci ratio: 3.024286e-01	ci left: 3.356050e-05	ci right 4.572633e-05	k: 167	n:4250000
Cons ci ratio: 1.325823e-01	ci left: 1.920113e-04	ci right 2.195007e-04	k: 873	n:4250000
KS ci ratio: 1.970214e-02	ci left: 9.137545e-03	ci right 9.319596e-03	k: 39220	n:4250000
MFAP1   4250000 perm   8742 sec   (486 perm/sec)   p_kst 9.228235e-03   p_cons 2.054118e-04   p_joint 3.929412e-05

Joint ci ratio: 3.024286e-01	ci left: 3.348172e-05	ci right 4.561899e-05	k: 167	n:4260000
Cons ci ratio: 1.324309e-01	ci left: 1.920145e-04	ci right 2.194705e-04	k: 875	n:4260000
KS ci ratio: 1.967781e-02	ci left: 9.138753e-03	ci right 9.320601e-03	k: 39317	n:4260000
MFAP1   4260000 perm   8784 sec   (485 perm/sec)   p_kst 9.229343e-03   p_cons 2.053991e-04   p_joint 3.920188e-05

Joint ci ratio: 3.024286e-01	ci left: 3.340330e-05	ci right 4.551216e-05	k: 167	n:4270000
Cons ci ratio: 1.322800e-01	ci left: 1.920177e-04	ci right 2.194404e-04	k: 877	n:4270000
KS ci ratio: 1.965534e-02	ci left: 9.138324e-03	ci right 9.319953e-03	k: 39407	n:4270000
MFAP1   4270000 perm   8824 sec   (484 perm/sec)   p_kst 9.228806e-03   p_cons 2.053864e-04   p_joint 3.911007e-05

Joint ci ratio: 3.024286e-01	ci left: 3.332526e-05	ci right 4.540582e-05	k: 167	n:4280000
Cons ci ratio: 1.320545e-01	ci left: 1.922468e-04	ci right 2.196518e-04	k: 880	n:4280000
KS ci ratio: 1.963043e-02	ci left: 9.140223e-03	ci right 9.321657e-03	k: 39507	n:4280000
MFAP1   4280000 perm   8864 sec   (483 perm/sec)   p_kst 9.230607e-03   p_cons 2.056075e-04   p_joint 3.901869e-05

Joint ci ratio: 3.015325e-01	ci left: 3.346302e-05	ci right 4.555069e-05	k: 168	n:4290000
Cons ci ratio: 1.319049e-01	ci left: 1.922495e-04	ci right 2.196214e-04	k: 882	n:4290000
KS ci ratio: 1.960386e-02	ci left: 9.143737e-03	ci right 9.324992e-03	k: 39614	n:4290000
MFAP1   4290000 perm   8904 sec   (482 perm/sec)   p_kst 9.234033e-03   p_cons 2.055944e-04   p_joint 3.916084e-05

Joint ci ratio: 3.015325e-01	ci left: 3.338520e-05	ci right 4.544475e-05	k: 168	n:4300000
Cons ci ratio: 1.316071e-01	ci left: 1.927020e-04	ci right 2.200715e-04	k: 886	n:4300000
KS ci ratio: 1.957592e-02	ci left: 9.148623e-03	ci right 9.329714e-03	k: 39727	n:4300000
MFAP1   4300000 perm   8944 sec   (481 perm/sec)   p_kst 9.238837e-03   p_cons 2.060465e-04   p_joint 3.906977e-05

Joint ci ratio: 3.015325e-01	ci left: 3.330774e-05	ci right 4.533931e-05	k: 168	n:4310000
Cons ci ratio: 1.313851e-01	ci left: 1.929280e-04	ci right 2.202798e-04	k: 889	n:4310000
KS ci ratio: 1.955354e-02	ci left: 9.148407e-03	ci right 9.329284e-03	k: 39818	n:4310000
MFAP1   4310000 perm   8983 sec   (480 perm/sec)   p_kst 9.238515e-03   p_cons 2.062645e-04   p_joint 3.897912e-05

Joint ci ratio: 2.997639e-01	ci left: 3.365868e-05	ci right 4.573214e-05	k: 170	n:4320000
Cons ci ratio: 1.310908e-01	ci left: 1.933770e-04	ci right 2.207262e-04	k: 893	n:4320000
KS ci ratio: 1.952729e-02	ci left: 9.151877e-03	ci right 9.332578e-03	k: 39925	n:4320000
MFAP1   4320000 perm   9024 sec   (479 perm/sec)   p_kst 9.241898e-03   p_cons 2.067130e-04   p_joint 3.935185e-05

Joint ci ratio: 2.997639e-01	ci left: 3.358095e-05	ci right 4.562652e-05	k: 170	n:4330000
Cons ci ratio: 1.309444e-01	ci left: 1.933771e-04	ci right 2.206935e-04	k: 895	n:4330000
KS ci ratio: 1.950458e-02	ci left: 9.152115e-03	ci right 9.332607e-03	k: 40018	n:4330000
MFAP1   4330000 perm   9065 sec   (478 perm/sec)   p_kst 9.242032e-03   p_cons 2.066975e-04   p_joint 3.926097e-05

Joint ci ratio: 2.988912e-01	ci left: 3.371669e-05	ci right 4.576906e-05	k: 171	n:4340000
Cons ci ratio: 1.307258e-01	ci left: 1.936002e-04	ci right 2.208988e-04	k: 898	n:4340000
KS ci ratio: 1.948318e-02	ci left: 9.151204e-03	ci right 9.331479e-03	k: 40106	n:4340000
MFAP1   4340000 perm   9105 sec   (477 perm/sec)   p_kst 9.241014e-03   p_cons 2.069124e-04   p_joint 3.940092e-05

Joint ci ratio: 2.988913e-01	ci left: 3.363918e-05	ci right 4.566384e-05	k: 171	n:4350000
Cons ci ratio: 1.305806e-01	ci left: 1.935999e-04	ci right 2.208658e-04	k: 900	n:4350000
KS ci ratio: 1.946259e-02	ci left: 9.149612e-03	ci right 9.329663e-03	k: 40191	n:4350000
MFAP1   4350000 perm   9145 sec   (476 perm/sec)   p_kst 9.239310e-03   p_cons 2.068966e-04   p_joint 3.931034e-05

Joint ci ratio: 2.988913e-01	ci left: 3.356203e-05	ci right 4.555911e-05	k: 171	n:4360000
Cons ci ratio: 1.302917e-01	ci left: 1.940433e-04	ci right 2.213066e-04	k: 904	n:4360000
KS ci ratio: 1.944011e-02	ci left: 9.149853e-03	ci right 9.329698e-03	k: 40284	n:4360000
MFAP1   4360000 perm   9185 sec   (475 perm/sec)   p_kst 9.239450e-03   p_cons 2.073394e-04   p_joint 3.922018e-05

Joint ci ratio: 2.988913e-01	ci left: 3.348522e-05	ci right 4.545486e-05	k: 171	n:4370000
Cons ci ratio: 1.302198e-01	ci left: 1.938207e-04	ci right 2.210364e-04	k: 905	n:4370000
KS ci ratio: 1.941479e-02	ci left: 9.152826e-03	ci right 9.332493e-03	k: 40389	n:4370000
MFAP1   4370000 perm   9225 sec   (474 perm/sec)   p_kst 9.242334e-03   p_cons 2.070938e-04   p_joint 3.913043e-05

Joint ci ratio: 2.988913e-01	ci left: 3.340877e-05	ci right 4.535108e-05	k: 171	n:4380000
Cons ci ratio: 1.300763e-01	ci left: 1.938199e-04	ci right 2.210033e-04	k: 907	n:4380000
KS ci ratio: 1.939272e-02	ci left: 9.152832e-03	ci right 9.332292e-03	k: 40481	n:4380000
MFAP1   4380000 perm   9266 sec   (473 perm/sec)   p_kst 9.242237e-03   p_cons 2.070776e-04   p_joint 3.904110e-05

Joint ci ratio: 2.988913e-01	ci left: 3.333267e-05	ci right 4.524777e-05	k: 171	n:4390000
Cons ci ratio: 1.300763e-01	ci left: 1.933784e-04	ci right 2.204998e-04	k: 907	n:4390000
KS ci ratio: 1.937048e-02	ci left: 9.153065e-03	ci right 9.332321e-03	k: 40574	n:4390000
MFAP1   4390000 perm   9307 sec   (472 perm/sec)   p_kst 9.242369e-03   p_cons 2.066059e-04   p_joint 3.895216e-05

Joint ci ratio: 2.988913e-01	ci left: 3.325692e-05	ci right 4.514494e-05	k: 171	n:4400000
Cons ci ratio: 1.298619e-01	ci left: 1.935986e-04	ci right 2.207027e-04	k: 910	n:4400000
KS ci ratio: 1.934688e-02	ci left: 9.154654e-03	ci right 9.333720e-03	k: 40673	n:4400000
MFAP1   4400000 perm   9350 sec   (471 perm/sec)   p_kst 9.243864e-03   p_cons 2.068182e-04   p_joint 3.886364e-05

Joint ci ratio: 2.980262e-01	ci left: 3.339128e-05	ci right 4.528625e-05	k: 172	n:4410000
Cons ci ratio: 1.295777e-01	ci left: 1.940372e-04	ci right 2.211387e-04	k: 914	n:4410000
KS ci ratio: 1.932408e-02	ci left: 9.155558e-03	ci right 9.334429e-03	k: 40769	n:4410000
MFAP1   4410000 perm   9390 sec   (470 perm/sec)   p_kst 9.244671e-03   p_cons 2.072562e-04   p_joint 3.900227e-05

Joint ci ratio: 2.980262e-01	ci left: 3.331574e-05	ci right 4.518380e-05	k: 172	n:4420000
Cons ci ratio: 1.295070e-01	ci left: 1.938171e-04	ci right 2.208719e-04	k: 915	n:4420000
KS ci ratio: 1.930017e-02	ci left: 9.157585e-03	ci right 9.336272e-03	k: 40870	n:4420000
MFAP1   4420000 perm   9431 sec   (469 perm/sec)   p_kst 9.246606e-03   p_cons 2.070136e-04   p_joint 3.891403e-05

Joint ci ratio: 2.980262e-01	ci left: 3.324053e-05	ci right 4.508180e-05	k: 172	n:4430000
Cons ci ratio: 1.292954e-01	ci left: 1.940348e-04	ci right 2.210725e-04	k: 918	n:4430000
KS ci ratio: 1.928015e-02	ci left: 9.156008e-03	ci right 9.334477e-03	k: 40955	n:4430000
MFAP1   4430000 perm   9472 sec   (468 perm/sec)   p_kst 9.244921e-03   p_cons 2.072235e-04   p_joint 3.882619e-05

Joint ci ratio: 2.980262e-01	ci left: 3.316567e-05	ci right 4.498027e-05	k: 172	n:4440000
Cons ci ratio: 1.292955e-01	ci left: 1.935978e-04	ci right 2.205745e-04	k: 918	n:4440000
KS ci ratio: 1.925995e-02	ci left: 9.154662e-03	ci right 9.332916e-03	k: 41041	n:4440000
MFAP1   4440000 perm   9513 sec   (467 perm/sec)   p_kst 9.243468e-03   p_cons 2.067568e-04   p_joint 3.873874e-05

Joint ci ratio: 2.980263e-01	ci left: 3.309114e-05	ci right 4.487919e-05	k: 172	n:4450000
Cons ci ratio: 1.290150e-01	ci left: 1.940326e-04	ci right 2.210068e-04	k: 922	n:4450000
KS ci ratio: 1.923722e-02	ci left: 9.155783e-03	ci right 9.333845e-03	k: 41138	n:4450000
MFAP1   4450000 perm   9554 sec   (466 perm/sec)   p_kst 9.244494e-03   p_cons 2.071910e-04   p_joint 3.865169e-05

Joint ci ratio: 2.980263e-01	ci left: 3.301694e-05	ci right 4.477856e-05	k: 172	n:4460000
Cons ci ratio: 1.285976e-01	ci left: 1.948995e-04	ci right 2.218998e-04	k: 928	n:4460000
KS ci ratio: 1.921410e-02	ci left: 9.157345e-03	ci right 9.335221e-03	k: 41237	n:4460000
MFAP1   4460000 perm   9595 sec   (465 perm/sec)   p_kst 9.245964e-03   p_cons 2.080717e-04   p_joint 3.856502e-05

Joint ci ratio: 2.980263e-01	ci left: 3.294308e-05	ci right 4.467839e-05	k: 172	n:4470000
Cons ci ratio: 1.285976e-01	ci left: 1.944635e-04	ci right 2.214034e-04	k: 928	n:4470000
KS ci ratio: 1.919388e-02	ci left: 9.156228e-03	ci right 9.333894e-03	k: 41324	n:4470000
MFAP1   4470000 perm   9637 sec   (464 perm/sec)   p_kst 9.244743e-03   p_cons 2.076063e-04   p_joint 3.847875e-05

Joint ci ratio: 2.980263e-01	ci left: 3.286954e-05	ci right 4.457866e-05	k: 172	n:4480000
Cons ci ratio: 1.285977e-01	ci left: 1.940294e-04	ci right 2.209092e-04	k: 928	n:4480000
KS ci ratio: 1.917418e-02	ci left: 9.154672e-03	ci right 9.332124e-03	k: 41409	n:4480000
MFAP1   4480000 perm   9679 sec   (463 perm/sec)   p_kst 9.243080e-03   p_cons 2.071429e-04   p_joint 3.839286e-05

Joint ci ratio: 2.980263e-01	ci left: 3.279634e-05	ci right 4.447937e-05	k: 172	n:4490000
Cons ci ratio: 1.283217e-01	ci left: 1.944595e-04	ci right 2.213367e-04	k: 932	n:4490000
KS ci ratio: 1.915385e-02	ci left: 9.153788e-03	ci right 9.331032e-03	k: 41497	n:4490000
MFAP1   4490000 perm   9720 sec   (462 perm/sec)   p_kst 9.242094e-03   p_cons 2.075724e-04   p_joint 3.830735e-05

Joint ci ratio: 2.980263e-01	ci left: 3.272346e-05	ci right 4.438053e-05	k: 172	n:4500000
Cons ci ratio: 1.281844e-01	ci left: 1.944576e-04	ci right 2.213035e-04	k: 934	n:4500000
KS ci ratio: 1.913614e-02	ci left: 9.150476e-03	ci right 9.327490e-03	k: 41574	n:4500000
MFAP1   4500000 perm   9762 sec   (461 perm/sec)   p_kst 9.238667e-03   p_cons 2.075556e-04   p_joint 3.822222e-05

Joint ci ratio: 2.980263e-01	ci left: 3.265090e-05	ci right 4.428213e-05	k: 172	n:4510000
Cons ci ratio: 1.281159e-01	ci left: 1.942410e-04	ci right 2.210417e-04	k: 935	n:4510000
KS ci ratio: 1.911292e-02	ci left: 9.152474e-03	ci right 9.329310e-03	k: 41675	n:4510000
MFAP1   4510000 perm   9804 sec   (460 perm/sec)   p_kst 9.240576e-03   p_cons 2.073171e-04   p_joint 3.813747e-05

Joint ci ratio: 2.980263e-01	ci left: 3.257866e-05	ci right 4.418416e-05	k: 172	n:4520000
Cons ci ratio: 1.281159e-01	ci left: 1.938113e-04	ci right 2.205527e-04	k: 935	n:4520000
KS ci ratio: 1.909163e-02	ci left: 9.152702e-03	ci right 9.329343e-03	k: 41768	n:4520000
MFAP1   4520000 perm   9846 sec   (459 perm/sec)   p_kst 9.240708e-03   p_cons 2.068584e-04   p_joint 3.805310e-05

Joint ci ratio: 2.980264e-01	ci left: 3.250674e-05	ci right 4.408662e-05	k: 172	n:4530000
Cons ci ratio: 1.279111e-01	ci left: 1.940245e-04	ci right 2.207492e-04	k: 938	n:4530000
KS ci ratio: 1.907271e-02	ci left: 9.150732e-03	ci right 9.327158e-03	k: 41851	n:4530000
MFAP1   4530000 perm   9888 sec   (458 perm/sec)   p_kst 9.238631e-03   p_cons 2.070640e-04   p_joint 3.796909e-05

Joint ci ratio: 2.971687e-01	ci left: 3.263897e-05	ci right 4.422617e-05	k: 173	n:4540000
Cons ci ratio: 1.277751e-01	ci left: 1.940236e-04	ci right 2.207176e-04	k: 940	n:4540000
KS ci ratio: 1.905316e-02	ci left: 9.149429e-03	ci right 9.325647e-03	k: 41937	n:4540000
MFAP1   4540000 perm   9930 sec   (457 perm/sec)   p_kst 9.237225e-03   p_cons 2.070485e-04   p_joint 3.810573e-05

Joint ci ratio: 2.971687e-01	ci left: 3.256723e-05	ci right 4.412897e-05	k: 173	n:4550000
Cons ci ratio: 1.277073e-01	ci left: 1.938099e-04	ci right 2.204593e-04	k: 941	n:4550000
KS ci ratio: 1.903389e-02	ci left: 9.147913e-03	ci right 9.323921e-03	k: 42022	n:4550000
MFAP1   4550000 perm   9973 sec   (456 perm/sec)   p_kst 9.235604e-03   p_cons 2.068132e-04   p_joint 3.802198e-05

Joint ci ratio: 2.971687e-01	ci left: 3.249581e-05	ci right 4.403220e-05	k: 173	n:4560000
Cons ci ratio: 1.277073e-01	ci left: 1.933849e-04	ci right 2.199759e-04	k: 941	n:4560000
KS ci ratio: 1.901378e-02	ci left: 9.147276e-03	ci right 9.323085e-03	k: 42111	n:4560000
MFAP1   4560000 perm   10015 sec   (455 perm/sec)   p_kst 9.234868e-03   p_cons 2.063596e-04   p_joint 3.793860e-05

Joint ci ratio: 2.971687e-01	ci left: 3.242471e-05	ci right 4.393585e-05	k: 173	n:4570000
Cons ci ratio: 1.275719e-01	ci left: 1.933854e-04	ci right 2.199461e-04	k: 943	n:4570000
KS ci ratio: 1.899350e-02	ci left: 9.146860e-03	ci right 9.322471e-03	k: 42201	n:4570000
MFAP1   4570000 perm   10057 sec   (454 perm/sec)   p_kst 9.234354e-03   p_cons 2.063457e-04   p_joint 3.785558e-05

Joint ci ratio: 2.971688e-01	ci left: 3.235391e-05	ci right 4.383992e-05	k: 173	n:4580000
Cons ci ratio: 1.275044e-01	ci left: 1.931745e-04	ci right 2.196912e-04	k: 944	n:4580000
KS ci ratio: 1.897441e-02	ci left: 9.145360e-03	ci right 9.320764e-03	k: 42286	n:4580000
MFAP1   4580000 perm   10099 sec   (454 perm/sec)   p_kst 9.232751e-03   p_cons 2.061135e-04   p_joint 3.777293e-05

Joint ci ratio: 2.971688e-01	ci left: 3.228342e-05	ci right 4.374441e-05	k: 173	n:4590000
Cons ci ratio: 1.273697e-01	ci left: 1.931755e-04	ci right 2.196622e-04	k: 946	n:4590000
KS ci ratio: 1.895448e-02	ci left: 9.144733e-03	ci right 9.319939e-03	k: 42375	n:4590000
MFAP1   4590000 perm   10141 sec   (453 perm/sec)   p_kst 9.232026e-03   p_cons 2.061002e-04   p_joint 3.769063e-05

Joint ci ratio: 2.971688e-01	ci left: 3.221324e-05	ci right 4.364931e-05	k: 173	n:4600000
Cons ci ratio: 1.271684e-01	ci left: 1.933869e-04	ci right 2.198576e-04	k: 949	n:4600000
KS ci ratio: 1.893529e-02	ci left: 9.143460e-03	ci right 9.318462e-03	k: 42461	n:4600000
MFAP1   4600000 perm   10184 sec   (452 perm/sec)   p_kst 9.230652e-03   p_cons 2.063043e-04   p_joint 3.760870e-05

Joint ci ratio: 2.971688e-01	ci left: 3.214336e-05	ci right 4.355463e-05	k: 173	n:4610000
Cons ci ratio: 1.270348e-01	ci left: 1.933875e-04	ci right 2.198283e-04	k: 951	n:4610000
KS ci ratio: 1.891437e-02	ci left: 9.143921e-03	ci right 9.318736e-03	k: 42555	n:4610000
MFAP1   4610000 perm   10226 sec   (451 perm/sec)   p_kst 9.231020e-03   p_cons 2.062907e-04   p_joint 3.752711e-05

Joint ci ratio: 2.971688e-01	ci left: 3.207379e-05	ci right 4.346035e-05	k: 173	n:4620000
Cons ci ratio: 1.269681e-01	ci left: 1.931785e-04	ci right 2.195758e-04	k: 952	n:4620000
KS ci ratio: 1.889306e-02	ci left: 9.144810e-03	ci right 9.319443e-03	k: 42651	n:4620000
MFAP1   4620000 perm   10269 sec   (450 perm/sec)   p_kst 9.231818e-03   p_cons 2.060606e-04   p_joint 3.744589e-05

Joint ci ratio: 2.971688e-01	ci left: 3.200451e-05	ci right 4.336649e-05	k: 173	n:4630000
Cons ci ratio: 1.268351e-01	ci left: 1.931795e-04	ci right 2.195472e-04	k: 954	n:4630000
KS ci ratio: 1.887249e-02	ci left: 9.145050e-03	ci right 9.319496e-03	k: 42744	n:4630000
MFAP1   4630000 perm   10313 sec   (449 perm/sec)   p_kst 9.231965e-03   p_cons 2.060475e-04   p_joint 3.736501e-05

Joint ci ratio: 2.963185e-01	ci left: 3.213501e-05	ci right 4.350454e-05	k: 174	n:4640000
Cons ci ratio: 1.265044e-01	ci left: 1.938066e-04	ci right 2.201858e-04	k: 959	n:4640000
KS ci ratio: 1.885288e-02	ci left: 9.144431e-03	ci right 9.318682e-03	k: 42833	n:4640000
MFAP1   4640000 perm   10356 sec   (448 perm/sec)   p_kst 9.231250e-03   p_cons 2.066810e-04   p_joint 3.750000e-05

Joint ci ratio: 2.963185e-01	ci left: 3.206591e-05	ci right 4.341098e-05	k: 174	n:4650000
Cons ci ratio: 1.264385e-01	ci left: 1.935981e-04	ci right 2.199341e-04	k: 960	n:4650000
KS ci ratio: 1.883511e-02	ci left: 9.142103e-03	ci right 9.316143e-03	k: 42914	n:4650000
MFAP1   4650000 perm   10399 sec   (447 perm/sec)   p_kst 9.228817e-03   p_cons 2.064516e-04   p_joint 3.741935e-05

Joint ci ratio: 2.843809e-01	ci left: 3.498169e-05	ci right 4.677036e-05	k: 189	n:4660000
Cons ci ratio: 1.263072e-01	ci left: 1.935982e-04	ci right 2.199049e-04	k: 962	n:4660000
KS ci ratio: 1.881429e-02	ci left: 9.142775e-03	ci right 9.316634e-03	k: 43009	n:4660000
MFAP1   4660000 perm   10443 sec   (446 perm/sec)   p_kst 9.229399e-03   p_cons 2.064378e-04   p_joint 4.055794e-05

Joint ci ratio: 2.843809e-01	ci left: 3.490678e-05	ci right 4.667021e-05	k: 189	n:4670000
Cons ci ratio: 1.261762e-01	ci left: 1.935984e-04	ci right 2.198758e-04	k: 964	n:4670000
KS ci ratio: 1.879706e-02	ci left: 9.140034e-03	ci right 9.313680e-03	k: 43088	n:4670000
MFAP1   4670000 perm   10487 sec   (445 perm/sec)   p_kst 9.226552e-03   p_cons 2.064240e-04   p_joint 4.047109e-05

Joint ci ratio: 2.836354e-01	ci left: 3.503065e-05	ci right 4.679934e-05	k: 190	n:4680000
Cons ci ratio: 1.259805e-01	ci left: 1.938056e-04	ci right 2.200672e-04	k: 967	n:4680000
KS ci ratio: 1.877549e-02	ci left: 9.141559e-03	ci right 9.315032e-03	k: 43187	n:4680000
MFAP1   4680000 perm   10531 sec   (444 perm/sec)   p_kst 9.227991e-03   p_cons 2.066239e-04   p_joint 4.059829e-05

Joint ci ratio: 2.836354e-01	ci left: 3.495596e-05	ci right 4.669956e-05	k: 190	n:4690000
Cons ci ratio: 1.259806e-01	ci left: 1.933923e-04	ci right 2.195980e-04	k: 967	n:4690000
KS ci ratio: 1.875443e-02	ci left: 9.142653e-03	ci right 9.315950e-03	k: 43284	n:4690000
MFAP1   4690000 perm   10574 sec   (444 perm/sec)   p_kst 9.228998e-03   p_cons 2.061834e-04   p_joint 4.051173e-05

Joint ci ratio: 2.828958e-01	ci left: 3.507924e-05	ci right 4.682804e-05	k: 191	n:4700000
Cons ci ratio: 1.259155e-01	ci left: 1.931869e-04	ci right 2.193502e-04	k: 968	n:4700000
KS ci ratio: 1.873388e-02	ci left: 9.143318e-03	ci right 9.316436e-03	k: 43379	n:4700000
MFAP1   4700000 perm   10619 sec   (443 perm/sec)   p_kst 9.229574e-03   p_cons 2.059574e-04   p_joint 4.063830e-05

Joint ci ratio: 2.828958e-01	ci left: 3.500476e-05	ci right 4.672862e-05	k: 191	n:4710000
Cons ci ratio: 1.259156e-01	ci left: 1.927768e-04	ci right 2.188845e-04	k: 968	n:4710000
KS ci ratio: 1.871448e-02	ci left: 9.142924e-03	ci right 9.315854e-03	k: 43469	n:4710000
MFAP1   4710000 perm   10663 sec   (442 perm/sec)   p_kst 9.229087e-03   p_cons 2.055202e-04   p_joint 4.055202e-05

Joint ci ratio: 2.828958e-01	ci left: 3.493060e-05	ci right 4.662961e-05	k: 191	n:4720000
Cons ci ratio: 1.259156e-01	ci left: 1.923683e-04	ci right 2.184208e-04	k: 968	n:4720000
KS ci ratio: 1.869363e-02	ci left: 9.144009e-03	ci right 9.316764e-03	k: 43566	n:4720000
MFAP1   4720000 perm   10707 sec   (441 perm/sec)   p_kst 9.230085e-03   p_cons 2.050847e-04   p_joint 4.046610e-05

Joint ci ratio: 2.828959e-01	ci left: 3.485675e-05	ci right 4.653103e-05	k: 191	n:4730000
Cons ci ratio: 1.258507e-01	ci left: 1.921664e-04	ci right 2.181770e-04	k: 969	n:4730000
KS ci ratio: 1.867630e-02	ci left: 9.141721e-03	ci right 9.314271e-03	k: 43647	n:4730000
MFAP1   4730000 perm   10750 sec   (440 perm/sec)   p_kst 9.227696e-03   p_cons 2.048626e-04   p_joint 4.038055e-05

Joint ci ratio: 2.821620e-01	ci left: 3.497924e-05	ci right 4.665874e-05	k: 192	n:4740000
Cons ci ratio: 1.257859e-01	ci left: 1.919653e-04	ci right 2.179344e-04	k: 970	n:4740000
KS ci ratio: 1.865944e-02	ci left: 9.139024e-03	ci right 9.311366e-03	k: 43726	n:4740000
MFAP1   4740000 perm   10795 sec   (439 perm/sec)   p_kst 9.224895e-03   p_cons 2.046414e-04   p_joint 4.050633e-05

Joint ci ratio: 2.821620e-01	ci left: 3.490560e-05	ci right 4.656051e-05	k: 192	n:4750000
Cons ci ratio: 1.257212e-01	ci left: 1.917651e-04	ci right 2.176927e-04	k: 971	n:4750000
KS ci ratio: 1.863791e-02	ci left: 9.140948e-03	ci right 9.313125e-03	k: 43827	n:4750000
MFAP1   4750000 perm   10839 sec   (438 perm/sec)   p_kst 9.226737e-03   p_cons 2.044211e-04   p_joint 4.042105e-05

Joint ci ratio: 2.821620e-01	ci left: 3.483226e-05	ci right 4.646270e-05	k: 192	n:4760000
Cons ci ratio: 1.256566e-01	ci left: 1.915657e-04	ci right 2.174521e-04	k: 972	n:4760000
KS ci ratio: 1.861753e-02	ci left: 9.141818e-03	ci right 9.313821e-03	k: 43923	n:4760000
MFAP1   4760000 perm   10883 sec   (437 perm/sec)   p_kst 9.227521e-03   p_cons 2.042017e-04   p_joint 4.033613e-05

Joint ci ratio: 2.821620e-01	ci left: 3.475924e-05	ci right 4.636529e-05	k: 192	n:4770000
Cons ci ratio: 1.253991e-01	ci left: 1.919763e-04	ci right 2.178611e-04	k: 976	n:4770000
KS ci ratio: 1.859721e-02	ci left: 9.142685e-03	ci right 9.314515e-03	k: 44019	n:4770000
MFAP1   4770000 perm   10928 sec   (436 perm/sec)   p_kst 9.228302e-03   p_cons 2.046122e-04   p_joint 4.025157e-05

Joint ci ratio: 2.814339e-01	ci left: 3.488094e-05	ci right 4.649224e-05	k: 193	n:4780000
Cons ci ratio: 1.252070e-01	ci left: 1.921826e-04	ci right 2.180526e-04	k: 979	n:4780000
KS ci ratio: 1.857738e-02	ci left: 9.143132e-03	ci right 9.314785e-03	k: 44113	n:4780000
MFAP1   4780000 perm   10973 sec   (436 perm/sec)   p_kst 9.228661e-03   p_cons 2.048117e-04   p_joint 4.037657e-05

Joint ci ratio: 2.799942e-01	ci left: 3.519627e-05	ci right 4.684203e-05	k: 195	n:4790000
Cons ci ratio: 1.250794e-01	ci left: 1.921859e-04	ci right 2.180279e-04	k: 981	n:4790000
KS ci ratio: 1.855868e-02	ci left: 9.142538e-03	ci right 9.314006e-03	k: 44202	n:4790000
MFAP1   4790000 perm   11018 sec   (435 perm/sec)   p_kst 9.227975e-03   p_cons 2.048017e-04   p_joint 4.070981e-05

Joint ci ratio: 2.799943e-01	ci left: 3.512295e-05	ci right 4.674445e-05	k: 195	n:4800000
Cons ci ratio: 1.250158e-01	ci left: 1.919873e-04	ci right 2.177886e-04	k: 982	n:4800000
KS ci ratio: 1.854341e-02	ci left: 9.138629e-03	ci right 9.309880e-03	k: 44275	n:4800000
MFAP1   4800000 perm   11062 sec   (434 perm/sec)   p_kst 9.223958e-03   p_cons 2.045833e-04   p_joint 4.062500e-05

Joint ci ratio: 2.799943e-01	ci left: 3.504993e-05	ci right 4.664727e-05	k: 195	n:4810000
Cons ci ratio: 1.250158e-01	ci left: 1.915882e-04	ci right 2.173358e-04	k: 982	n:4810000
KS ci ratio: 1.852523e-02	ci left: 9.137633e-03	ci right 9.308696e-03	k: 44362	n:4810000
MFAP1   4810000 perm   11106 sec   (433 perm/sec)   p_kst 9.222869e-03   p_cons 2.041580e-04   p_joint 4.054054e-05

Joint ci ratio: 2.905642e-01	ci left: 3.228036e-05	ci right 4.343875e-05	k: 181	n:4820000
Cons ci ratio: 1.248888e-01	ci left: 1.915927e-04	ci right 2.173128e-04	k: 984	n:4820000
KS ci ratio: 1.850605e-02	ci left: 9.137674e-03	ci right 9.308559e-03	k: 44454	n:4820000
MFAP1   4820000 perm   11152 sec   (432 perm/sec)   p_kst 9.222822e-03   p_cons 2.041494e-04   p_joint 3.755187e-05

Joint ci ratio: 2.905642e-01	ci left: 3.221352e-05	ci right 4.334882e-05	k: 181	n:4830000
Cons ci ratio: 1.248888e-01	ci left: 1.911960e-04	ci right 2.168629e-04	k: 984	n:4830000
KS ci ratio: 1.848756e-02	ci left: 9.137097e-03	ci right 9.307799e-03	k: 44543	n:4830000
MFAP1   4830000 perm   11197 sec   (431 perm/sec)   p_kst 9.222153e-03   p_cons 2.037267e-04   p_joint 3.747412e-05

Joint ci ratio: 2.905642e-01	ci left: 3.214697e-05	ci right 4.325925e-05	k: 181	n:4840000
Cons ci ratio: 1.246360e-01	ci left: 1.916016e-04	ci right 2.172670e-04	k: 988	n:4840000
KS ci ratio: 1.846662e-02	ci left: 9.138990e-03	ci right 9.309532e-03	k: 44644	n:4840000
MFAP1   4840000 perm   11242 sec   (431 perm/sec)   p_kst 9.223967e-03   p_cons 2.041322e-04   p_joint 3.739669e-05

Joint ci ratio: 2.897692e-01	ci left: 3.227187e-05	ci right 4.339121e-05	k: 182	n:4850000
Cons ci ratio: 1.245102e-01	ci left: 1.916061e-04	ci right 2.172443e-04	k: 990	n:4850000
KS ci ratio: 1.844845e-02	ci left: 9.138207e-03	ci right 9.308565e-03	k: 44732	n:4850000
MFAP1   4850000 perm   11287 sec   (430 perm/sec)   p_kst 9.223093e-03   p_cons 2.041237e-04   p_joint 3.752577e-05

Joint ci ratio: 2.881986e-01	ci left: 3.258716e-05	ci right 4.374319e-05	k: 184	n:4860000
Cons ci ratio: 1.243221e-01	ci left: 1.918099e-04	ci right 2.174337e-04	k: 993	n:4860000
KS ci ratio: 1.842951e-02	ci left: 9.138247e-03	ci right 9.308429e-03	k: 44824	n:4860000
MFAP1   4860000 perm   11333 sec   (429 perm/sec)   p_kst 9.223045e-03   p_cons 2.043210e-04   p_joint 3.786008e-05

Joint ci ratio: 2.874228e-01	ci left: 3.271076e-05	ci right 4.387349e-05	k: 185	n:4870000
Cons ci ratio: 1.242596e-01	ci left: 1.916150e-04	ci right 2.171990e-04	k: 994	n:4870000
KS ci ratio: 1.840877e-02	ci left: 9.140127e-03	ci right 9.310149e-03	k: 44925	n:4870000
MFAP1   4870000 perm   11379 sec   (428 perm/sec)   p_kst 9.224846e-03   p_cons 2.041068e-04   p_joint 3.798768e-05

Joint ci ratio: 2.866533e-01	ci left: 3.283390e-05	ci right 4.400322e-05	k: 186	n:4880000
Cons ci ratio: 1.240727e-01	ci left: 1.918180e-04	ci right 2.173877e-04	k: 997	n:4880000
KS ci ratio: 1.838850e-02	ci left: 9.141591e-03	ci right 9.311451e-03	k: 45024	n:4880000
MFAP1   4880000 perm   11425 sec   (427 perm/sec)   p_kst 9.226230e-03   p_cons 2.043033e-04   p_joint 3.811475e-05

Joint ci ratio: 2.858899e-01	ci left: 3.295658e-05	ci right 4.413237e-05	k: 187	n:4890000
Cons ci ratio: 1.238867e-01	ci left: 1.920202e-04	ci right 2.175757e-04	k: 1000	n:4890000
KS ci ratio: 1.836790e-02	ci left: 9.143456e-03	ci right 9.313159e-03	k: 45125	n:4890000
MFAP1   4890000 perm   11470 sec   (426 perm/sec)   p_kst 9.228016e-03   p_cons 2.044990e-04   p_joint 3.824131e-05

Joint ci ratio: 2.843811e-01	ci left: 3.326830e-05	ci right 4.447958e-05	k: 189	n:4900000
Cons ci ratio: 1.237014e-01	ci left: 1.922216e-04	ci right 2.177629e-04	k: 1003	n:4900000
KS ci ratio: 1.835023e-02	ci left: 9.142469e-03	ci right 9.311989e-03	k: 45212	n:4900000
MFAP1   4900000 perm   11515 sec   (426 perm/sec)   p_kst 9.226939e-03   p_cons 2.046939e-04   p_joint 3.857143e-05

Joint ci ratio: 2.836357e-01	ci left: 3.338970e-05	ci right 4.460712e-05	k: 190	n:4910000
Cons ci ratio: 1.233334e-01	ci left: 1.930144e-04	ci right 2.185791e-04	k: 1009	n:4910000
KS ci ratio: 1.833199e-02	ci left: 9.142095e-03	ci right 9.311438e-03	k: 45302	n:4910000
MFAP1   4910000 perm   11561 sec   (425 perm/sec)   p_kst 9.226477e-03   p_cons 2.054990e-04   p_joint 3.869654e-05

Joint ci ratio: 2.836357e-01	ci left: 3.332184e-05	ci right 4.451646e-05	k: 190	n:4920000
Cons ci ratio: 1.233334e-01	ci left: 1.926221e-04	ci right 2.181348e-04	k: 1009	n:4920000
KS ci ratio: 1.831483e-02	ci left: 9.140711e-03	ci right 9.309868e-03	k: 45387	n:4920000
MFAP1   4920000 perm   11607 sec   (424 perm/sec)   p_kst 9.225000e-03   p_cons 2.050813e-04   p_joint 3.861789e-05

Joint ci ratio: 2.828961e-01	ci left: 3.344268e-05	ci right 4.464337e-05	k: 191	n:4930000
Cons ci ratio: 1.232115e-01	ci left: 1.926245e-04	ci right 2.181105e-04	k: 1011	n:4930000
KS ci ratio: 1.829691e-02	ci left: 9.140140e-03	ci right 9.309119e-03	k: 45476	n:4930000
MFAP1   4930000 perm   11653 sec   (423 perm/sec)   p_kst 9.224341e-03   p_cons 2.050710e-04   p_joint 3.874239e-05

Joint ci ratio: 2.828961e-01	ci left: 3.337498e-05	ci right 4.455300e-05	k: 191	n:4940000
Cons ci ratio: 1.231507e-01	ci left: 1.924308e-04	ci right 2.178777e-04	k: 1012	n:4940000
KS ci ratio: 1.828005e-02	ci left: 9.138564e-03	ci right 9.307356e-03	k: 45560	n:4940000
MFAP1   4940000 perm   11699 sec   (422 perm/sec)   p_kst 9.222672e-03   p_cons 2.048583e-04   p_joint 3.866397e-05

Joint ci ratio: 2.828961e-01	ci left: 3.330756e-05	ci right 4.446299e-05	k: 191	n:4950000
Cons ci ratio: 1.230293e-01	ci left: 1.924336e-04	ci right 2.178540e-04	k: 1014	n:4950000
KS ci ratio: 1.826223e-02	ci left: 9.138000e-03	ci right 9.306616e-03	k: 45649	n:4950000
MFAP1   4950000 perm   11745 sec   (421 perm/sec)   p_kst 9.222020e-03   p_cons 2.048485e-04   p_joint 3.858586e-05

Joint ci ratio: 2.821623e-01	ci left: 3.342773e-05	ci right 4.458921e-05	k: 192	n:4960000
Cons ci ratio: 1.227875e-01	ci left: 1.928273e-04	ci right 2.182460e-04	k: 1018	n:4960000
KS ci ratio: 1.824204e-02	ci left: 9.139846e-03	ci right 9.308308e-03	k: 45750	n:4960000
MFAP1   4960000 perm   11792 sec   (421 perm/sec)   p_kst 9.223790e-03   p_cons 2.052419e-04   p_joint 3.870968e-05

Joint ci ratio: 2.821623e-01	ci left: 3.336047e-05	ci right 4.449949e-05	k: 192	n:4970000
Cons ci ratio: 1.227274e-01	ci left: 1.926344e-04	ci right 2.180143e-04	k: 1019	n:4970000
KS ci ratio: 1.822333e-02	ci left: 9.140284e-03	ci right 9.308579e-03	k: 45844	n:4970000
MFAP1   4970000 perm   11839 sec   (420 perm/sec)   p_kst 9.224145e-03   p_cons 2.050302e-04   p_joint 3.863179e-05

Joint ci ratio: 2.821623e-01	ci left: 3.329349e-05	ci right 4.441014e-05	k: 192	n:4980000
Cons ci ratio: 1.225473e-01	ci left: 1.928315e-04	ci right 2.181974e-04	k: 1022	n:4980000
KS ci ratio: 1.820847e-02	ci left: 9.136921e-03	ci right 9.305016e-03	k: 45919	n:4980000
MFAP1   4980000 perm   11885 sec   (419 perm/sec)   p_kst 9.220683e-03   p_cons 2.052209e-04   p_joint 3.855422e-05

Joint ci ratio: 2.821623e-01	ci left: 3.322676e-05	ci right 4.432114e-05	k: 192	n:4990000
Cons ci ratio: 1.224874e-01	ci left: 1.926393e-04	ci right 2.179666e-04	k: 1023	n:4990000
KS ci ratio: 1.818846e-02	ci left: 9.138759e-03	ci right 9.306701e-03	k: 46020	n:4990000
MFAP1   4990000 perm   11931 sec   (418 perm/sec)   p_kst 9.222445e-03   p_cons 2.050100e-04   p_joint 3.847695e-05

Joint ci ratio: 2.814341e-01	ci left: 3.334618e-05	ci right 4.444659e-05	k: 193	n:5000000
Cons ci ratio: 1.223680e-01	ci left: 1.926418e-04	ci right 2.179429e-04	k: 1025	n:5000000
KS ci ratio: 1.816991e-02	ci left: 9.139196e-03	ci right 9.306973e-03	k: 46114	n:5000000
MFAP1   5000000 perm   11978 sec   (417 perm/sec)   p_kst 9.222800e-03   p_cons 2.050000e-04   p_joint 3.860000e-05

Outputting figure to mutsig2_images.part000000000104/MFAP1.3_1356_5000000_0.0092228_0.000205_3.86e-05.png
                gene_name: MFAP1
               theta_stop: 0.28 
                    nperm: 5000000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.00020 
      ci_cons_bounds_left: 0.00019 
     ci_cons_bounds_right: 0.00022 
                  p_joint: 3.86e-05 
     ci_joint_bounds_left: 3.33e-05 
    ci_joint_bounds_right: 4.44e-05 

Current progress: 71 percent done.
MFF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
Cons ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
KS ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
MFF   10000 perm   2 sec   (5771 perm/sec)   p_kst 3.699000e-01   p_cons 4.898000e-01   p_joint 4.207000e-01

Outputting figure to mutsig2_images.part000000000104/MFF.3_1065_10000_0.3699_0.4898_0.4207.png
                gene_name: MFF
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 73 percent done.
MED14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384786e-02	ci left: 8.827819e-01	ci right 8.951905e-01	k: 8891	n:10000
Cons ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
KS ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
MED14   10000 perm   2 sec   (4493 perm/sec)   p_kst 1.979000e-01   p_cons 9.118000e-01   p_joint 8.891000e-01

Outputting figure to mutsig2_images.part000000000104/MED14.2_4489_10000_0.1979_0.9118_0.8891.png
                gene_name: MED14
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 76 percent done.
MED25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
Cons ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
MED25   10000 perm   2 sec   (5401 perm/sec)   p_kst 3.789000e-01   p_cons 3.827000e-01   p_joint 5.347000e-01

Outputting figure to mutsig2_images.part000000000104/MED25.2_2316_10000_0.3789_0.3827_0.5347.png
                gene_name: MED25
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 78 percent done.
MED28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
MED28   10000 perm   1 sec   (6679 perm/sec)   p_kst 3.896000e-01   p_cons 1.602000e-01   p_joint 4.546000e-01

Outputting figure to mutsig2_images.part000000000104/MED28.2_553_10000_0.3896_0.1602_0.4546.png
                gene_name: MED28
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
MED8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
MED8   10000 perm   2 sec   (6489 perm/sec)   p_kst 2.081000e-01   p_cons 5.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED8.2_942_10000_0.2081_0.5466_1.png
                gene_name: MED8
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
MEF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.979036e-02	ci left: 7.888790e-01	ci right 8.047477e-01	k: 7969	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
MEF2A   10000 perm   2 sec   (5738 perm/sec)   p_kst 9.034000e-01   p_cons 7.969000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEF2A.2_1700_10000_0.9034_0.7969_1.png
                gene_name: MEF2A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MEF2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
Cons ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
MEF2C   10000 perm   2 sec   (5613 perm/sec)   p_kst 2.036000e-01   p_cons 1.580000e-01   p_joint 1.921000e-01

Outputting figure to mutsig2_images.part000000000104/MEF2C.2_1604_10000_0.2036_0.158_0.1921.png
                gene_name: MEF2C
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 86 percent done.
MEGF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
Cons ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
KS ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
MEGF9   10000 perm   2 sec   (5882 perm/sec)   p_kst 4.759000e-01   p_cons 2.262000e-01   p_joint 3.473000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF9.2_1952_10000_0.4759_0.2262_0.3473.png
                gene_name: MEGF9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 88 percent done.
MELK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
Cons ci ratio: 3.439863e-02	ci left: 5.551154e-01	ci right 5.746468e-01	k: 5649	n:10000
KS ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
MELK   10000 perm   2 sec   (5581 perm/sec)   p_kst 4.541000e-01   p_cons 5.649000e-01   p_joint 9.174000e-01

Outputting figure to mutsig2_images.part000000000104/MELK.2_2024_10000_0.4541_0.5649_0.9174.png
                gene_name: MELK
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 90 percent done.
METTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 4.017574e-03	ci left: 9.875220e-01	ci right 9.915852e-01	k: 9897	n:10000
METTL1   10000 perm   2 sec   (6460 perm/sec)   p_kst 9.897000e-01   p_cons 4.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL1.2_855_10000_0.9897_0.4894_1.png
                gene_name: METTL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
METTL7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
Cons ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
KS ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
METTL7B   10000 perm   1 sec   (6703 perm/sec)   p_kst 6.586000e-01   p_cons 7.229000e-01   p_joint 6.900000e-01

Outputting figure to mutsig2_images.part000000000104/METTL7B.2_743_10000_0.6586_0.7229_0.69.png
                gene_name: METTL7B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 94 percent done.
MFAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
KS ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
MFAP3   10000 perm   2 sec   (6126 perm/sec)   p_kst 4.380000e-01   p_cons 1.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MFAP3.2_1097_10000_0.438_0.1738_1.png
                gene_name: MFAP3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
MFAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
Cons ci ratio: 1.757246e-01	ci left: 4.322176e-02	ci right 5.164440e-02	k: 473	n:10000
KS ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
MFAP4   10000 perm   2 sec   (6453 perm/sec)   p_kst 6.369000e-01   p_cons 4.730000e-02   p_joint 2.326000e-01

Joint ci ratio: 5.554933e-02	ci left: 1.937827e-01	ci right 2.049049e-01	k: 3986	n:20000
Cons ci ratio: 1.160707e-01	ci left: 5.081038e-02	ci right 5.712009e-02	k: 1078	n:20000
KS ci ratio: 2.097332e-02	ci left: 6.291870e-01	ci right 6.425735e-01	k: 12718	n:20000
MFAP4   20000 perm   4 sec   (5634 perm/sec)   p_kst 6.359000e-01   p_cons 5.390000e-02   p_joint 1.993000e-01

Joint ci ratio: 4.912232e-02	ci left: 1.707813e-01	ci right 1.794150e-01	k: 5252	n:30000
Cons ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
KS ci ratio: 1.723601e-02	ci left: 6.274163e-01	ci right 6.383580e-01	k: 18987	n:30000
MFAP4   30000 perm   6 sec   (5339 perm/sec)   p_kst 6.329000e-01   p_cons 5.536667e-02   p_joint 1.750667e-01

Outputting figure to mutsig2_images.part000000000104/MFAP4.2_792_30000_0.6329_0.055367_0.17507.png
                gene_name: MFAP4
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 98 percent done.
MFAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 2.644542e-02	ci left: 6.780094e-01	ci right 6.962815e-01	k: 6872	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
MFAP5   10000 perm   2 sec   (6609 perm/sec)   p_kst 2.890000e-02   p_cons 6.872000e-01   p_joint 2.598000e-01

Joint ci ratio: 4.518734e-02	ci left: 2.671816e-01	ci right 2.795843e-01	k: 5467	n:20000
Cons ci ratio: 1.889194e-02	ci left: 6.762990e-01	ci right 6.892479e-01	k: 13656	n:20000
KS ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
MFAP5   20000 perm   3 sec   (5779 perm/sec)   p_kst 2.910000e-02   p_cons 6.828000e-01   p_joint 2.733500e-01

Joint ci ratio: 3.454639e-02	ci left: 2.950826e-01	ci right 3.054894e-01	k: 9008	n:30000
Cons ci ratio: 1.559536e-02	ci left: 6.727125e-01	ci right 6.833197e-01	k: 20341	n:30000
KS ci ratio: 1.287635e-01	ci left: 2.803403e-02	ci right 3.192436e-02	k: 898	n:30000
MFAP5   30000 perm   6 sec   (5393 perm/sec)   p_kst 2.993333e-02   p_cons 6.780333e-01   p_joint 3.002667e-01

Joint ci ratio: 3.192225e-02	ci left: 2.693845e-01	ci right 2.781484e-01	k: 10950	n:40000
Cons ci ratio: 1.350322e-02	ci left: 6.735213e-01	ci right 6.827029e-01	k: 27125	n:40000
KS ci ratio: 1.097172e-01	ci left: 2.922580e-02	ci right 3.264275e-02	k: 1236	n:40000
MFAP5   40000 perm   8 sec   (5184 perm/sec)   p_kst 3.090000e-02   p_cons 6.781250e-01   p_joint 2.737500e-01

Joint ci ratio: 2.842025e-02	ci left: 2.716867e-01	ci right 2.795394e-01	k: 13780	n:50000
Cons ci ratio: 1.206289e-02	ci left: 6.745464e-01	ci right 6.827528e-01	k: 33933	n:50000
KS ci ratio: 9.797911e-02	ci left: 2.949811e-02	ci right 3.255666e-02	k: 1550	n:50000
MFAP5   50000 perm   10 sec   (5031 perm/sec)   p_kst 3.100000e-02   p_cons 6.786600e-01   p_joint 2.756000e-01

Outputting figure to mutsig2_images.part000000000104/MFAP5.2_558_50000_0.031_0.67866_0.2756.png
                gene_name: MFAP5
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000104
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 104 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 4422178: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000105> was used as the working directory.
Started at Wed Oct 24 18:00:06 2012
Results reported at Wed Oct 24 18:16:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000105.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000105.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 105  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000105.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1049.79 sec.
    Max Memory :      5342 MB
    Max Swap   :      7653 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
105
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 105
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 105: processing genes 9410 - 9499
Calculating significance of each gene.
Using projection method.
9410	MFHAS1	9.919827e-01
9411	MFI2	7.558377e-01
9412	MFN1	7.618641e-01
9413	MFN2	9.223599e-01
9414	MFNG	1
9415	MFRP	6.238535e-01
9416	MFSD1	6.301722e-01
9417	MFSD10	6.226367e-01
9418	MFSD11	8.706844e-01
9419	MFSD2A	1
9420	MFSD2B	9.530100e-01
9421	MFSD3	1
9422	MFSD4	6.549247e-01
9423	MFSD5	8.258764e-01
9424	MFSD6	9.299595e-01
9425	MFSD6L	1
9426	MFSD7	9.365575e-01
9427	MFSD8	1.025904e-01
9428	MFSD9	7.164305e-01
9429	MGA	1.398014e-01
9430	MGAM	1.383070e-01
9431	MGAT1	7.007594e-01
9432	MGAT2	1
9433	MGAT3	9.499095e-01
9434	MGAT4A	3.443091e-01
9435	MGAT4B	9.889872e-01
9436	MGAT4C	1.599170e-01
9437	MGAT5	7.234055e-01
9438	MGAT5B	5.090909e-01
9439	MGC26647	1.148830e-02
9440	MGC29506	1
9441	MGC42105	8.697257e-01
9442	MGC70857	1
9443	MGC87042	3.222247e-01
9444	MGEA5	5.211107e-01
9445	MGLL	8.951549e-01
9446	MGMT	1
9447	MGP	4.185466e-01
9448	MGRN1	1
9449	MGST1	5.306709e-01
9450	MGST2	1
9451	MGST3	2.681733e-01
9452	MIA	1
9453	MIA2	6.446938e-02
9454	MIA3	9.999661e-01
9455	MIB1	8.513871e-01
9456	MIB2	9.939404e-01
9457	MICA	1
9458	MICAL1	1
9459	MICAL2	7.063491e-01
9460	MICAL3	9.907790e-01
9461	MICALCL	8.488483e-01
9462	MICALL1	9.797401e-01
9463	MICALL2	8.592802e-01
9464	MICB	1
9465	MID1	9.470167e-01
9466	MID1IP1	4.560828e-01
9467	MID2	5.535971e-01
9468	MIDN	8.336502e-01
9469	MIER1	8.870791e-01
9470	MIER2	9.328313e-01
9471	MIER3	9.468027e-01
9472	MIF	1
9473	MIF4GD	6.533735e-01
9474	MIIP	8.432869e-01
9475	MINA	9.368051e-01
9476	MINK1	9.440879e-01
9477	MINPP1	1
9478	MIOS	4.258013e-02
9479	MIOX	1
9480	MIP	1
9481	MIPEP	7.444706e-01
9482	MIPOL1	7.958393e-01
9483	MIS12	7.155991e-01
9484	MITD1	6.114383e-01
9485	MITF	1
9486	MIXL1	5.541077e-01
9487	MKI67	1
9488	MKI67IP	9.239743e-02
9489	MKKS	6.060007e-01
9490	MKL1	9.603636e-01
9491	MKL2	9.947123e-01
9492	MKLN1	7.823648e-01
9493	MKNK1	6.665309e-01
In gene MKNK2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 882     n = 1	mu =   9.71e-07
9494	MKNK2	6.816958e-01
9495	MKRN1	6.112698e-01
9496	MKRN2	7.758279e-01
9497	MKRN3	1.405661e-01
9498	MKS1	4.387917e-01
9499	MKX	2.708921e-01
Done

Running MutSig 2:
Scatter job 105: processing genes 9410 - 9499
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
MGAM   10000 perm   3 sec   (3353 perm/sec)   p_kst 3.010000e-02   p_cons 5.293000e-01   p_joint 7.990000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 2.507078e-02	ci left: 5.430734e-01	ci right 5.569121e-01	k: 11000	n:20000
KS ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
MGAM   20000 perm   8 sec   (2399 perm/sec)   p_kst 3.165000e-02   p_cons 5.500000e-01   p_joint 5.675000e-02

Joint ci ratio: 8.347931e-02	ci left: 6.560144e-02	ci right 7.134914e-02	k: 2053	n:30000
Cons ci ratio: 2.136872e-02	ci left: 5.229988e-01	ci right 5.343289e-01	k: 15860	n:30000
KS ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
MGAM   30000 perm   12 sec   (2552 perm/sec)   p_kst 3.086667e-02   p_cons 5.286667e-01   p_joint 6.843333e-02

Joint ci ratio: 7.884409e-02	ci left: 5.590075e-02	ci right 6.051364e-02	k: 2327	n:40000
Cons ci ratio: 1.848071e-02	ci left: 5.244441e-01	ci right 5.342517e-01	k: 21174	n:40000
KS ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
MGAM   40000 perm   15 sec   (2631 perm/sec)   p_kst 3.120000e-02   p_cons 5.293500e-01   p_joint 5.817500e-02

Joint ci ratio: 7.261023e-02	ci left: 5.307655e-02	ci right 5.709530e-02	k: 2753	n:50000
Cons ci ratio: 1.658791e-02	ci left: 5.232126e-01	ci right 5.319842e-01	k: 26380	n:50000
KS ci ratio: 9.958065e-02	ci left: 2.856113e-02	ci right 3.157376e-02	k: 1502	n:50000
MGAM   50000 perm   19 sec   (2668 perm/sec)   p_kst 3.004000e-02   p_cons 5.276000e-01   p_joint 5.506000e-02

Outputting figure to mutsig2_images.part000000000105/MGAM.30_5762_50000_0.03004_0.5276_0.05506.png
                gene_name: MGAM
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 2 percent done.
MKI67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
Cons ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
KS ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
MKI67   10000 perm   4 sec   (2703 perm/sec)   p_kst 3.103000e-01   p_cons 6.580000e-01   p_joint 5.556000e-01

Outputting figure to mutsig2_images.part000000000105/MKI67.30_9827_10000_0.3103_0.658_0.5556.png
                gene_name: MKI67
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
MGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
KS ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
MGA   10000 perm   3 sec   (2858 perm/sec)   p_kst 3.511000e-01   p_cons 8.029000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000105/MGA.25_9290_10000_0.3511_0.8029_0.5427.png
                gene_name: MGA
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 6 percent done.
MIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
KS ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
MIA3   10000 perm   2 sec   (4111 perm/sec)   p_kst 4.893000e-01   p_cons 5.780000e-02   p_joint 2.520000e-01

Joint ci ratio: 5.073069e-02	ci left: 2.240336e-01	ci right 2.357450e-01	k: 4597	n:20000
Cons ci ratio: 1.103482e-01	ci left: 5.606595e-02	ci right 6.266288e-02	k: 1186	n:20000
KS ci ratio: 2.718941e-02	ci left: 5.026458e-01	ci right 5.165514e-01	k: 10192	n:20000
MIA3   20000 perm   5 sec   (3783 perm/sec)   p_kst 5.096000e-01   p_cons 5.930000e-02   p_joint 2.298500e-01

Joint ci ratio: 4.860713e-02	ci left: 1.738183e-01	ci right 1.825108e-01	k: 5344	n:30000
Cons ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
KS ci ratio: 2.230001e-02	ci left: 5.016922e-01	ci right 5.130397e-01	k: 15221	n:30000
MIA3   30000 perm   8 sec   (3633 perm/sec)   p_kst 5.073667e-01   p_cons 5.860000e-02   p_joint 1.781333e-01

Outputting figure to mutsig2_images.part000000000105/MIA3.13_5836_30000_0.50737_0.0586_0.17813.png
                gene_name: MIA3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
MKRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
MKRN3   10000 perm   2 sec   (4978 perm/sec)   p_kst 4.800000e-03   p_cons 8.907000e-01   p_joint 8.040000e-02

Joint ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
Cons ci ratio: 9.909430e-03	ci left: 8.822259e-01	ci right 8.910613e-01	k: 17734	n:20000
KS ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
MKRN3   20000 perm   4 sec   (4519 perm/sec)   p_kst 4.750000e-03   p_cons 8.867000e-01   p_joint 3.630000e-02

Joint ci ratio: 1.743706e-01	ci left: 1.512069e-02	ci right 1.804068e-02	k: 496	n:30000
Cons ci ratio: 7.935560e-03	ci left: 8.869457e-01	ci right 8.940451e-01	k: 26716	n:30000
KS ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
MKRN3   30000 perm   7 sec   (4348 perm/sec)   p_kst 4.300000e-03   p_cons 8.905333e-01   p_joint 1.653333e-02

Joint ci ratio: 1.031831e-01	ci left: 3.302530e-02	ci right 3.664264e-02	k: 1392	n:40000
Cons ci ratio: 6.845205e-03	ci left: 8.882087e-01	ci right 8.943343e-01	k: 35652	n:40000
KS ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
MKRN3   40000 perm   9 sec   (4229 perm/sec)   p_kst 4.500000e-03   p_cons 8.913000e-01   p_joint 3.480000e-02

Joint ci ratio: 1.075526e-01	ci left: 2.448638e-02	ci right 2.728903e-02	k: 1293	n:50000
Cons ci ratio: 6.361249e-03	ci left: 8.808173e-01	ci right 8.864581e-01	k: 44183	n:50000
KS ci ratio: 2.613261e-01	ci left: 3.894862e-03	ci right 5.083797e-03	k: 223	n:50000
MKRN3   50000 perm   12 sec   (4123 perm/sec)   p_kst 4.460000e-03   p_cons 8.836600e-01   p_joint 2.586000e-02

Joint ci ratio: 1.054810e-01	ci left: 2.131192e-02	ci right 2.370124e-02	k: 1349	n:60000
Cons ci ratio: 5.790282e-03	ci left: 8.816632e-01	ci right 8.867996e-01	k: 53055	n:60000
KS ci ratio: 2.469081e-01	ci left: 3.667021e-03	ci right 4.715164e-03	k: 250	n:60000
MKRN3   60000 perm   15 sec   (4037 perm/sec)   p_kst 4.166667e-03   p_cons 8.842500e-01   p_joint 2.248333e-02

Joint ci ratio: 1.069129e-01	ci left: 1.783452e-02	ci right 1.986278e-02	k: 1318	n:70000
Cons ci ratio: 5.371012e-03	ci left: 8.814606e-01	ci right 8.862218e-01	k: 61870	n:70000
KS ci ratio: 2.285274e-01	ci left: 3.707480e-03	ci right 4.677185e-03	k: 292	n:70000
MKRN3   70000 perm   18 sec   (3963 perm/sec)   p_kst 4.171429e-03   p_cons 8.838571e-01   p_joint 1.882857e-02

Joint ci ratio: 1.238117e-01	ci left: 1.160828e-02	ci right 1.315238e-02	k: 989	n:80000
Cons ci ratio: 4.806352e-03	ci left: 8.904844e-01	ci right 8.947871e-01	k: 71412	n:80000
KS ci ratio: 2.146897e-01	ci left: 3.704506e-03	ci right 4.607037e-03	k: 331	n:80000
MKRN3   80000 perm   21 sec   (3895 perm/sec)   p_kst 4.137500e-03   p_cons 8.926500e-01   p_joint 1.236250e-02

Joint ci ratio: 1.185078e-01	ci left: 1.129884e-02	ci right 1.273287e-02	k: 1080	n:90000
Cons ci ratio: 4.817935e-03	ci left: 8.781838e-01	ci right 8.824361e-01	k: 79229	n:90000
KS ci ratio: 2.017347e-01	ci left: 3.756322e-03	ci right 4.609456e-03	k: 375	n:90000
MKRN3   90000 perm   23 sec   (3832 perm/sec)   p_kst 4.166667e-03   p_cons 8.803222e-01   p_joint 1.200000e-02

Joint ci ratio: 1.198186e-01	ci left: 9.955092e-03	ci right 1.123353e-02	k: 1058	n:100000
Cons ci ratio: 4.572467e-03	ci left: 8.782116e-01	ci right 8.822463e-01	k: 88024	n:100000
KS ci ratio: 1.906456e-01	ci left: 3.808609e-03	ci right 4.620562e-03	k: 420	n:100000
MKRN3   100000 perm   27 sec   (3771 perm/sec)   p_kst 4.200000e-03   p_cons 8.802400e-01   p_joint 1.058000e-02

Joint ci ratio: 9.314662e-02	ci left: 1.510685e-02	ci right 1.659157e-02	k: 1742	n:110000
Cons ci ratio: 4.360307e-03	ci left: 8.782756e-01	ci right 8.821225e-01	k: 96823	n:110000
KS ci ratio: 1.781587e-01	ci left: 3.991377e-03	ci right 4.780560e-03	k: 481	n:110000
MKRN3   110000 perm   30 sec   (3712 perm/sec)   p_kst 4.372727e-03   p_cons 8.802091e-01   p_joint 1.583636e-02

Joint ci ratio: 9.318200e-02	ci left: 1.385566e-02	ci right 1.521795e-02	k: 1743	n:120000
Cons ci ratio: 4.175839e-03	ci left: 8.782990e-01	ci right 8.819826e-01	k: 105618	n:120000
KS ci ratio: 1.710350e-01	ci left: 3.985500e-03	ci right 4.738761e-03	k: 522	n:120000
MKRN3   120000 perm   33 sec   (3660 perm/sec)   p_kst 4.350000e-03   p_cons 8.801500e-01   p_joint 1.452500e-02

Joint ci ratio: 9.493204e-02	ci left: 1.233118e-02	ci right 1.356761e-02	k: 1682	n:130000
Cons ci ratio: 3.933273e-03	ci left: 8.825178e-01	ci right 8.860035e-01	k: 114955	n:130000
KS ci ratio: 1.660385e-01	ci left: 3.914683e-03	ci right 4.630784e-03	k: 554	n:130000
MKRN3   130000 perm   36 sec   (3609 perm/sec)   p_kst 4.261538e-03   p_cons 8.842692e-01   p_joint 1.293846e-02

Joint ci ratio: 8.434832e-02	ci left: 1.455161e-02	ci right 1.584001e-02	k: 2126	n:140000
Cons ci ratio: 3.796629e-03	ci left: 8.822320e-01	ci right 8.855949e-01	k: 123749	n:140000
KS ci ratio: 1.595560e-01	ci left: 3.950257e-03	ci right 4.641950e-03	k: 600	n:140000
MKRN3   140000 perm   39 sec   (3561 perm/sec)   p_kst 4.285714e-03   p_cons 8.839214e-01   p_joint 1.518571e-02

Joint ci ratio: 7.629773e-02	ci left: 1.663309e-02	ci right 1.795900e-02	k: 2593	n:150000
Cons ci ratio: 3.668748e-03	ci left: 8.822413e-01	ci right 8.854905e-01	k: 132581	n:150000
KS ci ratio: 1.542575e-01	ci left: 3.955915e-03	ci right 4.623470e-03	k: 642	n:150000
MKRN3   150000 perm   43 sec   (3514 perm/sec)   p_kst 4.280000e-03   p_cons 8.838733e-01   p_joint 1.728667e-02

Joint ci ratio: 7.776905e-02	ci left: 1.502298e-02	ci right 1.624466e-02	k: 2500	n:160000
Cons ci ratio: 3.548323e-03	ci left: 8.825214e-01	ci right 8.856646e-01	k: 141456	n:160000
KS ci ratio: 1.494541e-01	ci left: 3.961198e-03	ci right 4.606968e-03	k: 684	n:160000
MKRN3   160000 perm   46 sec   (3466 perm/sec)   p_kst 4.275000e-03   p_cons 8.841000e-01   p_joint 1.562500e-02

Joint ci ratio: 7.812302e-02	ci left: 1.402364e-02	ci right 1.516947e-02	k: 2480	n:170000
Cons ci ratio: 3.439313e-03	ci left: 8.827522e-01	ci right 8.857993e-01	k: 150328	n:170000
KS ci ratio: 1.463935e-01	ci left: 3.892450e-03	ci right 4.512881e-03	k: 713	n:170000
MKRN3   170000 perm   50 sec   (3419 perm/sec)   p_kst 4.194118e-03   p_cons 8.842824e-01   p_joint 1.458824e-02

Joint ci ratio: 7.850887e-02	ci left: 1.312448e-02	ci right 1.420238e-02	k: 2458	n:180000
Cons ci ratio: 3.342030e-03	ci left: 8.828189e-01	ci right 8.857798e-01	k: 159175	n:180000
KS ci ratio: 1.421745e-01	ci left: 3.906471e-03	ci right 4.509669e-03	k: 756	n:180000
MKRN3   180000 perm   53 sec   (3376 perm/sec)   p_kst 4.200000e-03   p_cons 8.843056e-01   p_joint 1.365556e-02

Joint ci ratio: 7.707406e-02	ci left: 1.291361e-02	ci right 1.395394e-02	k: 2551	n:190000
Cons ci ratio: 3.257746e-03	ci left: 8.825516e-01	ci right 8.854366e-01	k: 167960	n:190000
KS ci ratio: 1.384744e-01	ci left: 3.909081e-03	ci right 4.495678e-03	k: 797	n:190000
MKRN3   190000 perm   57 sec   (3335 perm/sec)   p_kst 4.194737e-03   p_cons 8.840000e-01   p_joint 1.342632e-02

Joint ci ratio: 7.539775e-02	ci left: 1.283195e-02	ci right 1.384223e-02	k: 2666	n:200000
Cons ci ratio: 3.174637e-03	ci left: 8.826287e-01	ci right 8.854401e-01	k: 176808	n:200000
KS ci ratio: 1.327641e-01	ci left: 4.051776e-03	ci right 4.632735e-03	k: 867	n:200000
MKRN3   200000 perm   61 sec   (3299 perm/sec)   p_kst 4.335000e-03   p_cons 8.840400e-01   p_joint 1.333000e-02

Joint ci ratio: 7.840926e-02	ci left: 1.130049e-02	ci right 1.222735e-02	k: 2469	n:210000
Cons ci ratio: 3.102543e-03	ci left: 8.823690e-01	ci right 8.851156e-01	k: 185587	n:210000
KS ci ratio: 1.300960e-01	ci left: 4.024622e-03	ci right 4.589195e-03	k: 903	n:210000
MKRN3   210000 perm   64 sec   (3265 perm/sec)   p_kst 4.300000e-03   p_cons 8.837476e-01   p_joint 1.175714e-02

Joint ci ratio: 8.001820e-02	ci left: 1.035891e-02	ci right 1.122678e-02	k: 2373	n:220000
Cons ci ratio: 3.031107e-03	ci left: 8.824079e-01	ci right 8.850911e-01	k: 194426	n:220000
KS ci ratio: 1.269735e-01	ci left: 4.039655e-03	ci right 4.591712e-03	k: 948	n:220000
MKRN3   220000 perm   68 sec   (3232 perm/sec)   p_kst 4.309091e-03   p_cons 8.837545e-01   p_joint 1.078636e-02

Joint ci ratio: 7.816246e-02	ci left: 1.039438e-02	ci right 1.124411e-02	k: 2487	n:230000
Cons ci ratio: 2.961377e-03	ci left: 8.826537e-01	ci right 8.852757e-01	k: 203313	n:230000
KS ci ratio: 1.243171e-01	ci left: 4.036676e-03	ci right 4.575934e-03	k: 989	n:230000
MKRN3   230000 perm   72 sec   (3199 perm/sec)   p_kst 4.300000e-03   p_cons 8.839696e-01   p_joint 1.081304e-02

Joint ci ratio: 7.150742e-02	ci left: 1.192424e-02	ci right 1.281260e-02	k: 2967	n:240000
Cons ci ratio: 2.900655e-03	ci left: 8.825656e-01	ci right 8.851335e-01	k: 212125	n:240000
KS ci ratio: 1.218801e-01	ci left: 4.030015e-03	ci right 4.557067e-03	k: 1029	n:240000
MKRN3   240000 perm   76 sec   (3163 perm/sec)   p_kst 4.287500e-03   p_cons 8.838542e-01   p_joint 1.236250e-02

Joint ci ratio: 7.025467e-02	ci left: 1.186767e-02	ci right 1.273569e-02	k: 3074	n:250000
Cons ci ratio: 2.839974e-03	ci left: 8.827423e-01	ci right 8.852568e-01	k: 221001	n:250000
KS ci ratio: 1.194689e-01	ci left: 4.031743e-03	ci right 4.547853e-03	k: 1071	n:250000
MKRN3   250000 perm   80 sec   (3133 perm/sec)   p_kst 4.284000e-03   p_cons 8.840040e-01   p_joint 1.229600e-02

Joint ci ratio: 7.177461e-02	ci left: 1.093502e-02	ci right 1.175285e-02	k: 2948	n:260000
Cons ci ratio: 2.786391e-03	ci left: 8.826509e-01	ci right 8.851175e-01	k: 229811	n:260000
KS ci ratio: 1.174603e-01	ci left: 4.014765e-03	ci right 4.519461e-03	k: 1108	n:260000
MKRN3   260000 perm   84 sec   (3103 perm/sec)   p_kst 4.261538e-03   p_cons 8.838885e-01   p_joint 1.133846e-02

Joint ci ratio: 7.150846e-02	ci left: 1.061362e-02	ci right 1.140434e-02	k: 2971	n:270000
Cons ci ratio: 2.733311e-03	ci left: 8.827489e-01	ci right 8.851687e-01	k: 238670	n:270000
KS ci ratio: 1.147481e-01	ci left: 4.056671e-03	ci right 4.554062e-03	k: 1161	n:270000
MKRN3   270000 perm   88 sec   (3062 perm/sec)   p_kst 4.300000e-03   p_cons 8.839630e-01   p_joint 1.100370e-02

Joint ci ratio: 7.259177e-02	ci left: 9.932824e-03	ci right 1.068451e-02	k: 2885	n:280000
Cons ci ratio: 2.684648e-03	ci left: 8.827256e-01	ci right 8.851021e-01	k: 247497	n:280000
KS ci ratio: 1.122155e-01	ci left: 4.095707e-03	ci right 4.586068e-03	k: 1214	n:280000
MKRN3   280000 perm   92 sec   (3033 perm/sec)   p_kst 4.335714e-03   p_cons 8.839179e-01   p_joint 1.030357e-02

Joint ci ratio: 7.186646e-02	ci left: 9.790061e-03	ci right 1.052323e-02	k: 2944	n:290000
Cons ci ratio: 2.637518e-03	ci left: 8.827805e-01	ci right 8.851153e-01	k: 256346	n:290000
KS ci ratio: 1.101054e-01	ci left: 4.112041e-03	ci right 4.594499e-03	k: 1261	n:290000
MKRN3   290000 perm   97 sec   (3003 perm/sec)   p_kst 4.348276e-03   p_cons 8.839517e-01   p_joint 1.015172e-02

Joint ci ratio: 7.109064e-02	ci left: 9.676499e-03	ci right 1.039301e-02	k: 3009	n:300000
Cons ci ratio: 2.593208e-03	ci left: 8.827985e-01	ci right 8.850941e-01	k: 265185	n:300000
KS ci ratio: 1.084434e-01	ci left: 4.101418e-03	ci right 4.574902e-03	k: 1300	n:300000
MKRN3   300000 perm   101 sec   (2974 perm/sec)   p_kst 4.333333e-03   p_cons 8.839500e-01   p_joint 1.003000e-02

Joint ci ratio: 6.732977e-02	ci left: 1.045180e-02	ci right 1.118319e-02	k: 3352	n:310000
Cons ci ratio: 2.548893e-03	ci left: 8.829906e-01	ci right 8.852473e-01	k: 274078	n:310000
KS ci ratio: 1.068544e-01	ci left: 4.091532e-03	ci right 4.556519e-03	k: 1339	n:310000
MKRN3   310000 perm   105 sec   (2946 perm/sec)   p_kst 4.319355e-03   p_cons 8.841226e-01   p_joint 1.081290e-02

Joint ci ratio: 6.857122e-02	ci left: 9.762582e-03	ci right 1.045883e-02	k: 3234	n:320000
Cons ci ratio: 2.510365e-03	ci left: 8.828760e-01	ci right 8.850982e-01	k: 282877	n:320000
KS ci ratio: 1.051420e-01	ci left: 4.097527e-03	ci right 4.555271e-03	k: 1383	n:320000
MKRN3   320000 perm   110 sec   (2918 perm/sec)   p_kst 4.321875e-03   p_cons 8.839906e-01   p_joint 1.010625e-02

Joint ci ratio: 6.344345e-02	ci left: 1.107339e-02	ci right 1.180190e-02	k: 3773	n:330000
Cons ci ratio: 2.471192e-03	ci left: 8.829634e-01	ci right 8.851511e-01	k: 291740	n:330000
KS ci ratio: 1.030753e-01	ci left: 4.138643e-03	ci right 4.591341e-03	k: 1439	n:330000
MKRN3   330000 perm   114 sec   (2890 perm/sec)   p_kst 4.360606e-03   p_cons 8.840606e-01   p_joint 1.143333e-02

Joint ci ratio: 6.360781e-02	ci left: 1.069553e-02	ci right 1.140107e-02	k: 3755	n:340000
Cons ci ratio: 2.433238e-03	ci left: 8.830931e-01	ci right 8.852474e-01	k: 300619	n:340000
KS ci ratio: 1.017425e-01	ci left: 4.125818e-03	ci right 4.570930e-03	k: 1477	n:340000
MKRN3   340000 perm   119 sec   (2862 perm/sec)   p_kst 4.344118e-03   p_cons 8.841735e-01   p_joint 1.104412e-02

Joint ci ratio: 6.652563e-02	ci left: 9.495951e-03	ci right 1.015220e-02	k: 3437	n:350000
Cons ci ratio: 2.398116e-03	ci left: 8.831181e-01	ci right 8.852413e-01	k: 309464	n:350000
KS ci ratio: 1.004600e-01	ci left: 4.113763e-03	ci right 4.551649e-03	k: 1515	n:350000
MKRN3   350000 perm   124 sec   (2834 perm/sec)   p_kst 4.328571e-03   p_cons 8.841829e-01   p_joint 9.820000e-03

Joint ci ratio: 6.708865e-02	ci left: 9.079153e-03	ci right 9.712115e-03	k: 3381	n:360000
Cons ci ratio: 2.363703e-03	ci left: 8.832088e-01	ci right 8.853017e-01	k: 318333	n:360000
KS ci ratio: 9.938559e-02	ci left: 4.088865e-03	ci right 4.519174e-03	k: 1548	n:360000
MKRN3   360000 perm   128 sec   (2807 perm/sec)   p_kst 4.300000e-03   p_cons 8.842583e-01   p_joint 9.391667e-03

Outputting figure to mutsig2_images.part000000000105/MKRN3.11_1528_360000_0.0043_0.88426_0.0093917.png
                gene_name: MKRN3
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.0094 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.0097 

Current progress: 10 percent done.
MICAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
MICAL3   10000 perm   3 sec   (3916 perm/sec)   p_kst 2.900000e-03   p_cons 8.724000e-01   p_joint 4.340000e-02

Joint ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
Cons ci ratio: 1.058273e-02	ci left: 8.681030e-01	ci right 8.773884e-01	k: 17456	n:20000
KS ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
MICAL3   20000 perm   6 sec   (3596 perm/sec)   p_kst 2.500000e-03   p_cons 8.728000e-01   p_joint 2.250000e-02

Joint ci ratio: 1.524378e-01	ci left: 1.992058e-02	ci right 2.323964e-02	k: 646	n:30000
Cons ci ratio: 8.601545e-03	ci left: 8.699894e-01	ci right 8.775381e-01	k: 26214	n:30000
KS ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
MICAL3   30000 perm   9 sec   (3472 perm/sec)   p_kst 2.600000e-03   p_cons 8.738000e-01   p_joint 2.153333e-02

Joint ci ratio: 1.479373e-01	ci left: 1.597260e-02	ci right 1.854817e-02	k: 689	n:40000
Cons ci ratio: 7.451571e-03	ci left: 8.704303e-01	ci right 8.769654e-01	k: 34949	n:40000
KS ci ratio: 3.715487e-01	ci left: 2.260691e-03	ci right 3.313558e-03	k: 110	n:40000
MICAL3   40000 perm   12 sec   (3388 perm/sec)   p_kst 2.750000e-03   p_cons 8.737250e-01   p_joint 1.722500e-02

Joint ci ratio: 1.455463e-01	ci left: 1.325834e-02	ci right 1.535860e-02	k: 714	n:50000
Cons ci ratio: 6.672222e-03	ci left: 8.705344e-01	ci right 8.763821e-01	k: 43674	n:50000
KS ci ratio: 3.394514e-01	ci left: 2.209321e-03	ci right 3.129935e-03	k: 132	n:50000
MICAL3   50000 perm   15 sec   (3325 perm/sec)   p_kst 2.640000e-03   p_cons 8.734800e-01   p_joint 1.428000e-02

Joint ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
Cons ci ratio: 6.094421e-03	ci left: 8.706625e-01	ci right 8.760014e-01	k: 52401	n:60000
KS ci ratio: 3.066182e-01	ci left: 2.300674e-03	ci right 3.148566e-03	k: 162	n:60000
MICAL3   60000 perm   18 sec   (3274 perm/sec)   p_kst 2.700000e-03   p_cons 8.733500e-01   p_joint 1.243333e-02

Joint ci ratio: 1.481685e-01	ci left: 9.166041e-03	ci right 1.064644e-02	k: 692	n:70000
Cons ci ratio: 5.621709e-03	ci left: 8.716775e-01	ci right 8.766058e-01	k: 61191	n:70000
KS ci ratio: 2.839985e-01	ci left: 2.329191e-03	ci right 3.112935e-03	k: 189	n:70000
MICAL3   70000 perm   22 sec   (3223 perm/sec)   p_kst 2.700000e-03   p_cons 8.741571e-01   p_joint 9.885714e-03

Joint ci ratio: 1.532471e-01	ci left: 7.490514e-03	ci right 8.745550e-03	k: 648	n:80000
Cons ci ratio: 5.253701e-03	ci left: 8.720459e-01	ci right 8.766519e-01	k: 69949	n:80000
KS ci ratio: 2.695061e-01	ci left: 2.282329e-03	ci right 3.004493e-03	k: 210	n:80000
MICAL3   80000 perm   25 sec   (3185 perm/sec)   p_kst 2.625000e-03   p_cons 8.743625e-01   p_joint 8.100000e-03

Joint ci ratio: 1.664847e-01	ci left: 5.612365e-03	ci right 6.642080e-03	k: 550	n:90000
Cons ci ratio: 4.943857e-03	ci left: 8.725978e-01	ci right 8.769335e-01	k: 78730	n:90000
KS ci ratio: 2.500971e-01	ci left: 2.381960e-03	ci right 3.072934e-03	k: 244	n:90000
MICAL3   90000 perm   29 sec   (3146 perm/sec)   p_kst 2.711111e-03   p_cons 8.747778e-01   p_joint 6.111111e-03

Joint ci ratio: 1.199331e-01	ci left: 9.935686e-03	ci right 1.121294e-02	k: 1056	n:100000
Cons ci ratio: 4.698228e-03	ci left: 8.723301e-01	ci right 8.764481e-01	k: 87440	n:100000
KS ci ratio: 2.339354e-01	ci left: 2.472574e-03	ci right 3.136786e-03	k: 279	n:100000
MICAL3   100000 perm   32 sec   (3111 perm/sec)   p_kst 2.790000e-03   p_cons 8.744000e-01   p_joint 1.056000e-02

Joint ci ratio: 1.213313e-01	ci left: 8.829352e-03	ci right 9.978556e-03	k: 1033	n:110000
Cons ci ratio: 4.475683e-03	ci left: 8.726194e-01	ci right 8.765427e-01	k: 96205	n:110000
KS ci ratio: 2.237786e-01	ci left: 2.470612e-03	ci right 3.101511e-03	k: 305	n:110000
MICAL3   110000 perm   36 sec   (3077 perm/sec)   p_kst 2.772727e-03   p_cons 8.745909e-01   p_joint 9.390909e-03

Joint ci ratio: 1.200399e-01	ci left: 8.279310e-03	ci right 9.344631e-03	k: 1056	n:120000
Cons ci ratio: 4.282677e-03	ci left: 8.728304e-01	ci right 8.765848e-01	k: 104966	n:120000
KS ci ratio: 2.135530e-01	ci left: 2.501046e-03	ci right 3.106712e-03	k: 335	n:120000
MICAL3   120000 perm   39 sec   (3043 perm/sec)   p_kst 2.791667e-03   p_cons 8.747167e-01   p_joint 8.800000e-03

Joint ci ratio: 1.249393e-01	ci left: 7.045620e-03	ci right 7.991932e-03	k: 976	n:130000
Cons ci ratio: 4.114105e-03	ci left: 8.729346e-01	ci right 8.765410e-01	k: 113717	n:130000
KS ci ratio: 2.068922e-01	ci left: 2.468977e-03	ci right 3.045867e-03	k: 357	n:130000
MICAL3   130000 perm   43 sec   (3004 perm/sec)   p_kst 2.746154e-03   p_cons 8.747462e-01   p_joint 7.507692e-03

Joint ci ratio: 1.205189e-01	ci left: 7.047784e-03	ci right 7.958507e-03	k: 1049	n:140000
Cons ci ratio: 3.961533e-03	ci left: 8.731629e-01	ci right 8.766359e-01	k: 122487	n:140000
KS ci ratio: 1.987312e-01	ci left: 2.496031e-03	ci right 3.053451e-03	k: 387	n:140000
MICAL3   140000 perm   47 sec   (2962 perm/sec)   p_kst 2.764286e-03   p_cons 8.749071e-01   p_joint 7.492857e-03

Joint ci ratio: 1.178659e-01	ci left: 6.888357e-03	ci right 7.757517e-03	k: 1097	n:150000
Cons ci ratio: 3.832336e-03	ci left: 8.729269e-01	ci right 8.762853e-01	k: 131192	n:150000
KS ci ratio: 1.905534e-01	ci left: 2.545260e-03	ci right 3.087575e-03	k: 421	n:150000
MICAL3   150000 perm   51 sec   (2924 perm/sec)   p_kst 2.806667e-03   p_cons 8.746133e-01   p_joint 7.313333e-03

Joint ci ratio: 9.973614e-02	ci left: 9.085326e-03	ci right 1.004507e-02	k: 1529	n:160000
Cons ci ratio: 3.709703e-03	ci left: 8.730365e-01	ci right 8.762874e-01	k: 139947	n:160000
KS ci ratio: 1.845300e-01	ci left: 2.552967e-03	ci right 3.077806e-03	k: 449	n:160000
MICAL3   160000 perm   55 sec   (2887 perm/sec)   p_kst 2.806250e-03   p_cons 8.746687e-01   p_joint 9.556250e-03

Joint ci ratio: 1.021140e-01	ci left: 8.155056e-03	ci right 9.038296e-03	k: 1460	n:170000
Cons ci ratio: 3.592049e-03	ci left: 8.735073e-01	ci right 8.766564e-01	k: 148765	n:170000
KS ci ratio: 1.784831e-01	ci left: 2.576865e-03	ci right 3.087383e-03	k: 480	n:170000
MICAL3   170000 perm   60 sec   (2853 perm/sec)   p_kst 2.823529e-03   p_cons 8.750882e-01   p_joint 8.588235e-03

Joint ci ratio: 1.037989e-01	ci left: 7.452881e-03	ci right 8.274199e-03	k: 1414	n:180000
Cons ci ratio: 3.491364e-03	ci left: 8.735192e-01	ci right 8.765798e-01	k: 157510	n:180000
KS ci ratio: 1.724881e-01	ci left: 2.614304e-03	ci right 3.113032e-03	k: 514	n:180000
MICAL3   180000 perm   64 sec   (2819 perm/sec)   p_kst 2.855556e-03   p_cons 8.750556e-01   p_joint 7.855556e-03

Joint ci ratio: 1.012909e-01	ci left: 7.424719e-03	ci right 8.221986e-03	k: 1485	n:190000
Cons ci ratio: 3.392887e-03	ci left: 8.739066e-01	ci right 8.768819e-01	k: 166326	n:190000
KS ci ratio: 1.664522e-01	ci left: 2.668234e-03	ci right 3.157654e-03	k: 552	n:190000
MICAL3   190000 perm   68 sec   (2786 perm/sec)   p_kst 2.905263e-03   p_cons 8.754000e-01   p_joint 7.815789e-03

Joint ci ratio: 9.464074e-02	ci left: 8.102300e-03	ci right 8.912042e-03	k: 1700	n:200000
Cons ci ratio: 3.308643e-03	ci left: 8.738341e-01	ci right 8.767350e-01	k: 175058	n:200000
KS ci ratio: 1.625325e-01	ci left: 2.664265e-03	ci right 3.140324e-03	k: 579	n:200000
MICAL3   200000 perm   73 sec   (2755 perm/sec)   p_kst 2.895000e-03   p_cons 8.752900e-01   p_joint 8.500000e-03

Joint ci ratio: 9.396639e-02	ci left: 7.832665e-03	ci right 8.609573e-03	k: 1725	n:210000
Cons ci ratio: 3.228897e-03	ci left: 8.738698e-01	ci right 8.767007e-01	k: 183811	n:210000
KS ci ratio: 1.584851e-01	ci left: 2.674516e-03	ci right 3.139374e-03	k: 609	n:210000
MICAL3   210000 perm   77 sec   (2724 perm/sec)   p_kst 2.900000e-03   p_cons 8.752905e-01   p_joint 8.214286e-03

Joint ci ratio: 9.191341e-02	ci left: 7.822937e-03	ci right 8.581015e-03	k: 1803	n:220000
Cons ci ratio: 3.148540e-03	ci left: 8.743278e-01	ci right 8.770895e-01	k: 192657	n:220000
KS ci ratio: 1.542430e-01	ci left: 2.701449e-03	ci right 3.157259e-03	k: 643	n:220000
MICAL3   220000 perm   82 sec   (2695 perm/sec)   p_kst 2.922727e-03   p_cons 8.757136e-01   p_joint 8.195455e-03

Joint ci ratio: 9.047533e-02	ci left: 7.729215e-03	ci right 8.465871e-03	k: 1861	n:230000
Cons ci ratio: 3.079279e-03	ci left: 8.743622e-01	ci right 8.770631e-01	k: 201415	n:230000
KS ci ratio: 1.512217e-01	ci left: 2.692717e-03	ci right 3.137348e-03	k: 669	n:230000
MICAL3   230000 perm   86 sec   (2668 perm/sec)   p_kst 2.908696e-03   p_cons 8.757174e-01   p_joint 8.091304e-03

Joint ci ratio: 8.952662e-02	ci left: 7.570052e-03	ci right 8.283576e-03	k: 1901	n:240000
Cons ci ratio: 3.012145e-03	ci left: 8.745576e-01	ci right 8.772000e-01	k: 210212	n:240000
KS ci ratio: 1.479455e-01	ci left: 2.700843e-03	ci right 3.136300e-03	k: 699	n:240000
MICAL3   240000 perm   91 sec   (2642 perm/sec)   p_kst 2.912500e-03   p_cons 8.758833e-01   p_joint 7.920833e-03

Joint ci ratio: 8.765652e-02	ci left: 7.587986e-03	ci right 8.287495e-03	k: 1983	n:250000
Cons ci ratio: 2.949214e-03	ci left: 8.747379e-01	ci right 8.773254e-01	k: 219009	n:250000
KS ci ratio: 1.445758e-01	ci left: 2.719980e-03	ci right 3.147672e-03	k: 732	n:250000
MICAL3   250000 perm   96 sec   (2613 perm/sec)   p_kst 2.928000e-03   p_cons 8.760360e-01   p_joint 7.932000e-03

Joint ci ratio: 7.786493e-02	ci left: 9.277783e-03	ci right 1.003321e-02	k: 2509	n:260000
Cons ci ratio: 2.893394e-03	ci left: 8.746536e-01	ci right 8.771918e-01	k: 227741	n:260000
KS ci ratio: 1.342347e-01	ci left: 3.049725e-03	ci right 3.492232e-03	k: 849	n:260000
MICAL3   260000 perm   101 sec   (2586 perm/sec)   p_kst 3.265385e-03   p_cons 8.759269e-01   p_joint 9.650000e-03

Joint ci ratio: 7.481067e-02	ci left: 9.689905e-03	ci right 1.044659e-02	k: 2717	n:270000
Cons ci ratio: 2.838303e-03	ci left: 8.747547e-01	ci right 8.772447e-01	k: 236521	n:270000
KS ci ratio: 1.314785e-01	ci left: 3.065676e-03	ci right 3.500650e-03	k: 885	n:270000
MICAL3   270000 perm   106 sec   (2559 perm/sec)   p_kst 3.277778e-03   p_cons 8.760037e-01   p_joint 1.006296e-02

Joint ci ratio: 7.583082e-02	ci left: 9.094936e-03	ci right 9.815273e-03	k: 2646	n:280000
Cons ci ratio: 2.784776e-03	ci left: 8.749636e-01	ci right 8.774071e-01	k: 245333	n:280000
KS ci ratio: 1.291668e-01	ci left: 3.066747e-03	ci right 3.493636e-03	k: 917	n:280000
MICAL3   280000 perm   110 sec   (2536 perm/sec)   p_kst 3.275000e-03   p_cons 8.761893e-01   p_joint 9.450000e-03

Joint ci ratio: 7.057059e-02	ci left: 1.015591e-02	ci right 1.090220e-02	k: 3052	n:290000
Cons ci ratio: 2.733552e-03	ci left: 8.752070e-01	ci right 8.776061e-01	k: 254159	n:290000
KS ci ratio: 1.269059e-01	ci left: 3.071146e-03	ci right 3.490602e-03	k: 950	n:290000
MICAL3   290000 perm   116 sec   (2506 perm/sec)   p_kst 3.275862e-03   p_cons 8.764103e-01   p_joint 1.052414e-02

Joint ci ratio: 7.052479e-02	ci left: 9.833694e-03	ci right 1.055582e-02	k: 3057	n:300000
Cons ci ratio: 2.729176e-03	ci left: 8.718501e-01	ci right 8.742360e-01	k: 261914	n:300000
KS ci ratio: 1.248871e-01	ci left: 3.068853e-03	ci right 3.480835e-03	k: 981	n:300000
MICAL3   300000 perm   121 sec   (2485 perm/sec)   p_kst 3.270000e-03   p_cons 8.730467e-01   p_joint 1.019000e-02

Joint ci ratio: 6.990435e-02	ci left: 9.690757e-03	ci right 1.039587e-02	k: 3112	n:310000
Cons ci ratio: 2.687001e-03	ci left: 8.716868e-01	ci right 8.740353e-01	k: 270588	n:310000
KS ci ratio: 1.229617e-01	ci left: 3.066758e-03	ci right 3.471648e-03	k: 1012	n:310000
MICAL3   310000 perm   126 sec   (2465 perm/sec)   p_kst 3.264516e-03   p_cons 8.728645e-01   p_joint 1.003871e-02

Joint ci ratio: 6.966727e-02	ci left: 9.455431e-03	ci right 1.014099e-02	k: 3134	n:320000
Cons ci ratio: 2.646419e-03	ci left: 8.715590e-01	ci right 8.738717e-01	k: 279270	n:320000
KS ci ratio: 1.214734e-01	ci left: 3.046656e-03	ci right 3.443674e-03	k: 1037	n:320000
MICAL3   320000 perm   131 sec   (2445 perm/sec)   p_kst 3.240625e-03   p_cons 8.727187e-01   p_joint 9.793750e-03

Joint ci ratio: 6.948775e-02	ci left: 9.219483e-03	ci right 9.886142e-03	k: 3151	n:330000
Cons ci ratio: 2.606802e-03	ci left: 8.715093e-01	ci right 8.737871e-01	k: 287975	n:330000
KS ci ratio: 1.193638e-01	ci left: 3.063079e-03	ci right 3.454815e-03	k: 1074	n:330000
MICAL3   330000 perm   136 sec   (2426 perm/sec)   p_kst 3.254545e-03   p_cons 8.726515e-01   p_joint 9.548485e-03

Joint ci ratio: 6.916614e-02	ci left: 9.034998e-03	ci right 9.685171e-03	k: 3181	n:340000
Cons ci ratio: 2.567790e-03	ci left: 8.715602e-01	ci right 8.738040e-01	k: 296713	n:340000
KS ci ratio: 1.177863e-01	ci left: 3.055752e-03	ci right 3.441027e-03	k: 1103	n:340000
MICAL3   340000 perm   141 sec   (2407 perm/sec)   p_kst 3.244118e-03   p_cons 8.726853e-01   p_joint 9.355882e-03

Joint ci ratio: 6.856915e-02	ci left: 8.934084e-03	ci right 9.571224e-03	k: 3237	n:350000
Cons ci ratio: 2.529860e-03	ci left: 8.716629e-01	ci right 8.738737e-01	k: 305470	n:350000
KS ci ratio: 1.159110e-01	ci left: 3.068297e-03	ci right 3.448573e-03	k: 1139	n:350000
MICAL3   350000 perm   147 sec   (2389 perm/sec)   p_kst 3.254286e-03   p_cons 8.727714e-01   p_joint 9.248571e-03

Joint ci ratio: 6.796645e-02	ci left: 8.844261e-03	ci right 9.469233e-03	k: 3295	n:360000
Cons ci ratio: 2.493280e-03	ci left: 8.717852e-01	ci right 8.739643e-01	k: 314236	n:360000
KS ci ratio: 1.145632e-01	ci left: 3.055903e-03	ci right 3.429941e-03	k: 1166	n:360000
MICAL3   360000 perm   152 sec   (2371 perm/sec)   p_kst 3.238889e-03   p_cons 8.728778e-01   p_joint 9.152778e-03

Joint ci ratio: 6.780907e-02	ci left: 8.647707e-03	ci right 9.257318e-03	k: 3311	n:370000
Cons ci ratio: 2.460667e-03	ci left: 8.716814e-01	ci right 8.738316e-01	k: 322921	n:370000
KS ci ratio: 1.130241e-01	ci left: 3.057336e-03	ci right 3.426187e-03	k: 1198	n:370000
MICAL3   370000 perm   157 sec   (2351 perm/sec)   p_kst 3.237838e-03   p_cons 8.727595e-01   p_joint 8.948649e-03

Joint ci ratio: 6.717557e-02	ci left: 8.583117e-03	ci right 9.182302e-03	k: 3374	n:380000
Cons ci ratio: 2.429241e-03	ci left: 8.715886e-01	ci right 8.737110e-01	k: 331608	n:380000
KS ci ratio: 1.118192e-01	ci left: 3.043376e-03	ci right 3.406370e-03	k: 1224	n:380000
MICAL3   380000 perm   163 sec   (2333 perm/sec)   p_kst 3.221053e-03   p_cons 8.726526e-01   p_joint 8.878947e-03

Joint ci ratio: 6.472323e-02	ci left: 9.016255e-03	ci right 9.621838e-03	k: 3633	n:390000
Cons ci ratio: 2.398075e-03	ci left: 8.715855e-01	ci right 8.736807e-01	k: 340328	n:390000
KS ci ratio: 1.103427e-01	ci left: 3.047605e-03	ci right 3.405992e-03	k: 1257	n:390000
MICAL3   390000 perm   168 sec   (2315 perm/sec)   p_kst 3.223077e-03   p_cons 8.726359e-01   p_joint 9.315385e-03

Joint ci ratio: 6.405826e-02	ci left: 8.977783e-03	ci right 9.574358e-03	k: 3709	n:400000
Cons ci ratio: 2.369490e-03	ci left: 8.714499e-01	ci right 8.735197e-01	k: 348995	n:400000
KS ci ratio: 1.090504e-01	ci left: 3.044357e-03	ci right 3.397900e-03	k: 1287	n:400000
MICAL3   400000 perm   174 sec   (2294 perm/sec)   p_kst 3.217500e-03   p_cons 8.724875e-01   p_joint 9.272500e-03

Joint ci ratio: 6.510055e-02	ci left: 8.480384e-03	ci right 9.053420e-03	k: 3593	n:410000
Cons ci ratio: 2.340540e-03	ci left: 8.714507e-01	ci right 8.734952e-01	k: 357715	n:410000
KS ci ratio: 1.075571e-01	ci left: 3.055532e-03	ci right 3.405206e-03	k: 1323	n:410000
MICAL3   410000 perm   180 sec   (2272 perm/sec)   p_kst 3.226829e-03   p_cons 8.724756e-01   p_joint 8.763415e-03

Joint ci ratio: 6.212528e-02	ci left: 9.098642e-03	ci right 9.684347e-03	k: 3943	n:420000
Cons ci ratio: 2.312057e-03	ci left: 8.715067e-01	ci right 8.735263e-01	k: 366458	n:420000
KS ci ratio: 1.061236e-01	ci left: 3.066205e-03	ci right 3.412132e-03	k: 1359	n:420000
MICAL3   420000 perm   187 sec   (2243 perm/sec)   p_kst 3.235714e-03   p_cons 8.725190e-01   p_joint 9.388095e-03

Joint ci ratio: 6.188713e-02	ci left: 8.958001e-03	ci right 9.532362e-03	k: 3974	n:430000
Cons ci ratio: 2.284684e-03	ci left: 8.715508e-01	ci right 8.735465e-01	k: 375197	n:430000
KS ci ratio: 1.051242e-01	ci left: 3.053765e-03	ci right 3.394844e-03	k: 1385	n:430000
MICAL3   430000 perm   193 sec   (2224 perm/sec)   p_kst 3.220930e-03   p_cons 8.725512e-01   p_joint 9.241860e-03

Joint ci ratio: 6.222629e-02	ci left: 8.660395e-03	ci right 9.218827e-03	k: 3932	n:440000
Cons ci ratio: 2.259277e-03	ci left: 8.714927e-01	ci right 8.734661e-01	k: 383892	n:440000
KS ci ratio: 1.036749e-01	ci left: 3.070685e-03	ci right 3.408636e-03	k: 1424	n:440000
MICAL3   440000 perm   199 sec   (2206 perm/sec)   p_kst 3.236364e-03   p_cons 8.724818e-01   p_joint 8.936364e-03

Joint ci ratio: 6.239276e-02	ci left: 8.424158e-03	ci right 8.968863e-03	k: 3912	n:450000
Cons ci ratio: 2.233627e-03	ci left: 8.715443e-01	ci right 8.734954e-01	k: 392635	n:450000
KS ci ratio: 1.025655e-01	ci left: 3.069559e-03	ci right 3.403554e-03	k: 1455	n:450000
MICAL3   450000 perm   205 sec   (2190 perm/sec)   p_kst 3.233333e-03   p_cons 8.725222e-01   p_joint 8.693333e-03

Joint ci ratio: 6.212706e-02	ci left: 8.313772e-03	ci right 8.848967e-03	k: 3946	n:460000
Cons ci ratio: 2.209284e-03	ci left: 8.715480e-01	ci right 8.734778e-01	k: 401357	n:460000
KS ci ratio: 1.018350e-01	ci left: 3.047313e-03	ci right 3.376385e-03	k: 1476	n:460000
MICAL3   460000 perm   212 sec   (2175 perm/sec)   p_kst 3.208696e-03   p_cons 8.725152e-01   p_joint 8.578261e-03

Joint ci ratio: 6.155351e-02	ci left: 8.291893e-03	ci right 8.820575e-03	k: 4020	n:470000
Cons ci ratio: 2.186933e-03	ci left: 8.714278e-01	ci right 8.733378e-01	k: 410021	n:470000
KS ci ratio: 1.007160e-01	ci left: 3.050911e-03	ci right 3.376537e-03	k: 1509	n:470000
MICAL3   470000 perm   218 sec   (2159 perm/sec)   p_kst 3.210638e-03   p_cons 8.723851e-01   p_joint 8.553191e-03

Joint ci ratio: 6.248235e-02	ci left: 7.879122e-03	ci right 8.389342e-03	k: 3903	n:480000
Cons ci ratio: 2.164231e-03	ci left: 8.714173e-01	ci right 8.733074e-01	k: 418735	n:480000
KS ci ratio: 9.992585e-02	ci left: 3.036095e-03	ci right 3.357448e-03	k: 1533	n:480000
MICAL3   480000 perm   224 sec   (2143 perm/sec)   p_kst 3.193750e-03   p_cons 8.723646e-01   p_joint 8.131250e-03

Outputting figure to mutsig2_images.part000000000105/MICAL3.10_6870_480000_0.0031937_0.87236_0.0081312.png
                gene_name: MICAL3
               theta_stop: 0.100 
                    nperm: 480000 
                     p_ks: 0.0032 
        ci_ks_bounds_left: 0.0030 
       ci_ks_bounds_right: 0.0034 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.0081 
     ci_joint_bounds_left: 0.0079 
    ci_joint_bounds_right: 0.0084 

Current progress: 12 percent done.
MGAT4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
MGAT4C   10000 perm   2 sec   (5344 perm/sec)   p_kst 2.966000e-01   p_cons 2.450000e-02   p_joint 5.930000e-02

Joint ci ratio: 6.649161e-02	ci left: 1.431051e-01	ci right 1.529975e-01	k: 2960	n:20000
Cons ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
KS ci ratio: 4.235581e-02	ci left: 2.934547e-01	ci right 3.062036e-01	k: 5996	n:20000
MGAT4C   20000 perm   4 sec   (4892 perm/sec)   p_kst 2.998000e-01   p_cons 2.575000e-02   p_joint 1.480000e-01

Joint ci ratio: 6.270099e-02	ci left: 1.116409e-01	ci right 1.189005e-01	k: 3457	n:30000
Cons ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
KS ci ratio: 3.482238e-02	ci left: 2.917662e-01	ci right 3.021398e-01	k: 8908	n:30000
MGAT4C   30000 perm   6 sec   (4717 perm/sec)   p_kst 2.969333e-01   p_cons 2.420000e-02   p_joint 1.152333e-01

Joint ci ratio: 5.721515e-02	ci left: 1.020121e-01	ci right 1.080454e-01	k: 4200	n:40000
Cons ci ratio: 1.224005e-01	ci left: 2.346781e-02	ci right 2.655168e-02	k: 999	n:40000
KS ci ratio: 2.985589e-02	ci left: 2.966563e-01	ci right 3.056726e-01	k: 12046	n:40000
MGAT4C   40000 perm   9 sec   (4621 perm/sec)   p_kst 3.011500e-01   p_cons 2.497500e-02   p_joint 1.050000e-01

Joint ci ratio: 5.369659e-02	ci left: 9.372773e-02	ci right 9.891925e-02	k: 4815	n:50000
Cons ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
KS ci ratio: 2.679780e-02	ci left: 2.956662e-01	ci right 3.037171e-01	k: 14984	n:50000
MGAT4C   50000 perm   11 sec   (4537 perm/sec)   p_kst 2.996800e-01   p_cons 2.490000e-02   p_joint 9.630000e-02

Joint ci ratio: 5.496969e-02	ci left: 7.598153e-02	ci right 8.029272e-02	k: 4687	n:60000
Cons ci ratio: 9.993999e-02	ci left: 2.374919e-02	ci right 2.626371e-02	k: 1499	n:60000
KS ci ratio: 2.441156e-02	ci left: 2.968993e-01	ci right 3.042533e-01	k: 18034	n:60000
MGAT4C   60000 perm   13 sec   (4456 perm/sec)   p_kst 3.005667e-01   p_cons 2.498333e-02   p_joint 7.811667e-02

Outputting figure to mutsig2_images.part000000000105/MGAT4C.8_1449_60000_0.30057_0.024983_0.078117.png
                gene_name: MGAT4C
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 13 percent done.
MGEA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
Cons ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
KS ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
MGEA5   10000 perm   2 sec   (4933 perm/sec)   p_kst 6.241000e-01   p_cons 1.070000e-01   p_joint 6.103000e-01

Joint ci ratio: 3.547378e-02	ci left: 3.723193e-01	ci right 3.858159e-01	k: 7581	n:20000
Cons ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
KS ci ratio: 2.093484e-02	ci left: 6.300402e-01	ci right 6.434200e-01	k: 12735	n:20000
MGEA5   20000 perm   4 sec   (4499 perm/sec)   p_kst 6.367500e-01   p_cons 1.032500e-01   p_joint 3.790500e-01

Outputting figure to mutsig2_images.part000000000105/MGEA5.8_2815_20000_0.63675_0.10325_0.37905.png
                gene_name: MGEA5
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 15 percent done.
MIOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
MIOS   10000 perm   2 sec   (4707 perm/sec)   p_kst 2.978000e-01   p_cons 4.190000e-01   p_joint 3.317000e-01

Outputting figure to mutsig2_images.part000000000105/MIOS.8_2668_10000_0.2978_0.419_0.3317.png
                gene_name: MIOS
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 17 percent done.
MGAT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
KS ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
MGAT5B   10000 perm   2 sec   (5067 perm/sec)   p_kst 2.638000e-01   p_cons 7.330000e-02   p_joint 1.558000e-01

Joint ci ratio: 6.466887e-02	ci left: 1.501578e-01	ci right 1.602427e-01	k: 3103	n:20000
Cons ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
KS ci ratio: 4.643656e-02	ci left: 2.565608e-01	ci right 2.688082e-01	k: 5253	n:20000
MGAT5B   20000 perm   4 sec   (4600 perm/sec)   p_kst 2.626500e-01   p_cons 7.210000e-02   p_joint 1.551500e-01

Outputting figure to mutsig2_images.part000000000105/MGAT5B.7_2542_20000_0.26265_0.0721_0.15515.png
                gene_name: MGAT5B
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 19 percent done.
MICAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
Cons ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
KS ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
MICAL2   10000 perm   2 sec   (4831 perm/sec)   p_kst 7.567000e-01   p_cons 1.518000e-01   p_joint 6.197000e-01

Outputting figure to mutsig2_images.part000000000105/MICAL2.7_3475_10000_0.7567_0.1518_0.6197.png
                gene_name: MICAL2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 21 percent done.
MIPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
MIPEP   10000 perm   2 sec   (5136 perm/sec)   p_kst 5.234000e-01   p_cons 1.520000e-02   p_joint 7.110000e-02

Joint ci ratio: 9.744782e-02	ci left: 7.119113e-02	ci right 7.853305e-02	k: 1496	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 2.638494e-02	ci left: 5.176507e-01	ci right 5.315421e-01	k: 10492	n:20000
MIPEP   20000 perm   4 sec   (4647 perm/sec)   p_kst 5.246000e-01   p_cons 1.420000e-02   p_joint 7.480000e-02

Joint ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
Cons ci ratio: 1.929815e-01	ci left: 1.225647e-02	ci right 1.490563e-02	k: 406	n:30000
KS ci ratio: 2.144315e-02	ci left: 5.212646e-01	ci right 5.325969e-01	k: 15808	n:30000
MIPEP   30000 perm   7 sec   (4445 perm/sec)   p_kst 5.269333e-01   p_cons 1.353333e-02   p_joint 6.036667e-02

Joint ci ratio: 6.244738e-02	ci left: 8.686775e-02	ci right 9.249198e-02	k: 3586	n:40000
Cons ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
KS ci ratio: 1.932195e-02	ci left: 5.022127e-01	ci right 5.120362e-01	k: 20285	n:40000
MIPEP   40000 perm   9 sec   (4328 perm/sec)   p_kst 5.071250e-01   p_cons 1.315000e-02   p_joint 8.965000e-02

Joint ci ratio: 6.894915e-02	ci left: 5.862260e-02	ci right 6.282858e-02	k: 3035	n:50000
Cons ci ratio: 1.549391e-01	ci left: 1.165993e-02	ci right 1.363725e-02	k: 631	n:50000
KS ci ratio: 1.732460e-02	ci left: 5.015075e-01	ci right 5.102919e-01	k: 25295	n:50000
MIPEP   50000 perm   12 sec   (4231 perm/sec)   p_kst 5.059000e-01   p_cons 1.262000e-02   p_joint 6.070000e-02

Joint ci ratio: 7.523821e-02	ci left: 4.165250e-02	ci right 4.492520e-02	k: 2596	n:60000
Cons ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
KS ci ratio: 1.578729e-02	ci left: 5.027744e-01	ci right 5.107916e-01	k: 30407	n:60000
MIPEP   60000 perm   14 sec   (4151 perm/sec)   p_kst 5.067833e-01   p_cons 1.241667e-02   p_joint 4.326667e-02

Joint ci ratio: 5.994529e-02	ci left: 5.584302e-02	ci right 5.930805e-02	k: 4029	n:70000
Cons ci ratio: 1.413244e-01	ci left: 1.010264e-02	ci right 1.165259e-02	k: 760	n:70000
KS ci ratio: 1.461199e-02	ci left: 5.032176e-01	ci right 5.106390e-01	k: 35485	n:70000
MIPEP   70000 perm   17 sec   (4077 perm/sec)   p_kst 5.069286e-01   p_cons 1.085714e-02   p_joint 5.755714e-02

Joint ci ratio: 5.620147e-02	ci left: 5.571164e-02	ci right 5.894556e-02	k: 4585	n:80000
Cons ci ratio: 1.312628e-01	ci left: 1.030085e-02	ci right 1.175993e-02	k: 881	n:80000
KS ci ratio: 1.364245e-02	ci left: 5.044042e-01	ci right 5.113452e-01	k: 40630	n:80000
MIPEP   80000 perm   20 sec   (4009 perm/sec)   p_kst 5.078750e-01   p_cons 1.101250e-02   p_joint 5.731250e-02

Joint ci ratio: 5.354131e-02	ci left: 5.470412e-02	ci right 5.772457e-02	k: 5058	n:90000
Cons ci ratio: 1.236457e-01	ci left: 1.036112e-02	ci right 1.173733e-02	k: 993	n:90000
KS ci ratio: 1.285132e-02	ci left: 5.050281e-01	ci right 5.115714e-01	k: 45747	n:90000
MIPEP   90000 perm   23 sec   (3940 perm/sec)   p_kst 5.083000e-01   p_cons 1.103333e-02   p_joint 5.620000e-02

Joint ci ratio: 5.281574e-02	ci left: 5.082939e-02	ci right 5.359665e-02	k: 5220	n:100000
Cons ci ratio: 1.172172e-01	ci left: 1.041130e-02	ci right 1.171729e-02	k: 1105	n:100000
KS ci ratio: 1.219429e-02	ci left: 5.050962e-01	ci right 5.113033e-01	k: 50820	n:100000
MIPEP   100000 perm   26 sec   (3872 perm/sec)   p_kst 5.082000e-01   p_cons 1.105000e-02   p_joint 5.220000e-02

Joint ci ratio: 4.928984e-02	ci left: 5.303097e-02	ci right 5.571986e-02	k: 5980	n:110000
Cons ci ratio: 1.116973e-01	ci left: 1.045387e-02	ci right 1.169938e-02	k: 1217	n:110000
KS ci ratio: 1.162555e-02	ci left: 5.052955e-01	ci right 5.112132e-01	k: 55908	n:110000
MIPEP   110000 perm   29 sec   (3814 perm/sec)   p_kst 5.082545e-01   p_cons 1.106364e-02   p_joint 5.436364e-02

Joint ci ratio: 4.729782e-02	ci left: 5.285967e-02	ci right 5.542859e-02	k: 6496	n:120000
Cons ci ratio: 1.070941e-01	ci left: 1.044999e-02	ci right 1.164049e-02	k: 1324	n:120000
KS ci ratio: 1.114707e-02	ci left: 5.046837e-01	ci right 5.103493e-01	k: 60902	n:120000
MIPEP   120000 perm   32 sec   (3763 perm/sec)   p_kst 5.075167e-01   p_cons 1.103333e-02   p_joint 5.413333e-02

Joint ci ratio: 4.546762e-02	ci left: 5.285359e-02	ci right 5.532020e-02	k: 7030	n:130000
Cons ci ratio: 1.028715e-01	ci left: 1.047758e-02	ci right 1.162131e-02	k: 1435	n:130000
KS ci ratio: 1.071606e-02	ci left: 5.045014e-01	ci right 5.099444e-01	k: 65939	n:130000
MIPEP   130000 perm   35 sec   (3708 perm/sec)   p_kst 5.072231e-01   p_cons 1.103846e-02   p_joint 5.407692e-02

Joint ci ratio: 4.455845e-02	ci left: 5.121726e-02	ci right 5.355847e-02	k: 7333	n:140000
Cons ci ratio: 9.885394e-02	ci left: 1.055776e-02	ci right 1.166263e-02	k: 1554	n:140000
KS ci ratio: 1.048386e-02	ci left: 4.970273e-01	ci right 5.022727e-01	k: 69951	n:140000
MIPEP   140000 perm   38 sec   (3650 perm/sec)   p_kst 4.996500e-01   p_cons 1.110000e-02   p_joint 5.237857e-02

Outputting figure to mutsig2_images.part000000000105/MIPEP.7_2218_140000_0.49965_0.0111_0.052379.png
                gene_name: MIPEP
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 23 percent done.
MFSD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
Cons ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
MFSD8   10000 perm   2 sec   (5303 perm/sec)   p_kst 6.502000e-01   p_cons 3.130000e-02   p_joint 1.813000e-01

Joint ci ratio: 8.474023e-02	ci left: 9.253972e-02	ci right 1.007780e-01	k: 1932	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 2.045089e-02	ci left: 6.408328e-01	ci right 6.541243e-01	k: 12950	n:20000
MFSD8   20000 perm   4 sec   (4686 perm/sec)   p_kst 6.475000e-01   p_cons 2.775000e-02   p_joint 9.660000e-02

Joint ci ratio: 7.117087e-02	ci left: 8.855559e-02	ci right 9.512370e-02	k: 2754	n:30000
Cons ci ratio: 1.348374e-01	ci left: 2.554970e-02	ci right 2.927591e-02	k: 821	n:30000
KS ci ratio: 1.680453e-02	ci left: 6.391534e-01	ci right 6.500186e-01	k: 19338	n:30000
MFSD8   30000 perm   7 sec   (4532 perm/sec)   p_kst 6.446000e-01   p_cons 2.736667e-02   p_joint 9.180000e-02

Joint ci ratio: 5.035925e-02	ci left: 1.282273e-01	ci right 1.348763e-01	k: 5261	n:40000
Cons ci ratio: 1.117856e-01	ci left: 2.815539e-02	ci right 3.151333e-02	k: 1192	n:40000
KS ci ratio: 1.452786e-02	ci left: 6.406889e-01	ci right 6.500900e-01	k: 25816	n:40000
MFSD8   40000 perm   9 sec   (4430 perm/sec)   p_kst 6.454000e-01   p_cons 2.980000e-02   p_joint 1.315250e-01

Joint ci ratio: 4.462380e-02	ci left: 1.307084e-01	ci right 1.366941e-01	k: 6684	n:50000
Cons ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
KS ci ratio: 1.327193e-02	ci left: 6.314240e-01	ci right 6.398802e-01	k: 31783	n:50000
MFSD8   50000 perm   12 sec   (4345 perm/sec)   p_kst 6.356600e-01   p_cons 3.210000e-02   p_joint 1.336800e-01

Outputting figure to mutsig2_images.part000000000105/MFSD8.6_1605_50000_0.63566_0.0321_0.13368.png
                gene_name: MFSD8
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
MGAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
Cons ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
MGAT5   10000 perm   2 sec   (5227 perm/sec)   p_kst 1.074000e-01   p_cons 3.241000e-01   p_joint 1.686000e-01

Joint ci ratio: 6.022457e-02	ci left: 1.695095e-01	ci right 1.800852e-01	k: 3495	n:20000
Cons ci ratio: 3.969766e-02	ci left: 3.211953e-01	ci right 3.342548e-01	k: 6554	n:20000
KS ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
MGAT5   20000 perm   4 sec   (4734 perm/sec)   p_kst 1.113500e-01   p_cons 3.277000e-01   p_joint 1.747500e-01

Outputting figure to mutsig2_images.part000000000105/MGAT5.6_2290_20000_0.11135_0.3277_0.17475.png
                gene_name: MGAT5
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 27 percent done.
MIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.987749e-02	ci left: 6.229630e-01	ci right 6.419597e-01	k: 6325	n:10000
Cons ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
KS ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
MIA2   10000 perm   2 sec   (5182 perm/sec)   p_kst 6.305000e-01   p_cons 1.947000e-01   p_joint 6.325000e-01

Outputting figure to mutsig2_images.part000000000105/MIA2.6_1989_10000_0.6305_0.1947_0.6325.png
                gene_name: MIA2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 29 percent done.
MIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
KS ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
MIB1   10000 perm   2 sec   (4759 perm/sec)   p_kst 8.730000e-01   p_cons 3.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MIB1.6_3105_10000_0.873_0.364_1.png
                gene_name: MIB1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
MGC26647
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
MGC26647   10000 perm   2 sec   (6092 perm/sec)   p_kst 9.135000e-01   p_cons 2.490000e-02   p_joint 1.307000e-01

Joint ci ratio: 6.753912e-02	ci left: 1.392598e-01	ci right 1.490439e-01	k: 2882	n:20000
Cons ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
KS ci ratio: 8.774366e-03	ci left: 9.048783e-01	ci right 9.129023e-01	k: 18179	n:20000
MGC26647   20000 perm   4 sec   (5359 perm/sec)   p_kst 9.089500e-01   p_cons 1.900000e-02   p_joint 1.441000e-01

Joint ci ratio: 6.959649e-02	ci left: 9.229527e-02	ci right 9.898328e-02	k: 2868	n:30000
Cons ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
KS ci ratio: 7.183282e-03	ci left: 9.051811e-01	ci right 9.117396e-01	k: 27255	n:30000
MGC26647   30000 perm   6 sec   (5168 perm/sec)   p_kst 9.085000e-01   p_cons 2.443333e-02   p_joint 9.560000e-02

Joint ci ratio: 6.456595e-02	ci left: 8.164425e-02	ci right 8.711626e-02	k: 3374	n:40000
Cons ci ratio: 1.259326e-01	ci left: 2.215878e-02	ci right 2.516092e-02	k: 945	n:40000
KS ci ratio: 6.243147e-03	ci left: 9.050240e-01	ci right 9.107166e-01	k: 36316	n:40000
MGC26647   40000 perm   8 sec   (5004 perm/sec)   p_kst 9.079000e-01   p_cons 2.362500e-02   p_joint 8.435000e-02

Joint ci ratio: 6.479873e-02	ci left: 6.598580e-02	ci right 7.042449e-02	k: 3409	n:50000
Cons ci ratio: 1.116505e-01	ci left: 2.271509e-02	ci right 2.542056e-02	k: 1202	n:50000
KS ci ratio: 5.597289e-03	ci left: 9.049267e-01	ci right 9.100258e-01	k: 45375	n:50000
MGC26647   50000 perm   10 sec   (4863 perm/sec)   p_kst 9.075000e-01   p_cons 2.404000e-02   p_joint 6.818000e-02

Joint ci ratio: 5.022543e-02	ci left: 8.984709e-02	ci right 9.449244e-02	k: 5529	n:60000
Cons ci ratio: 1.014413e-01	ci left: 2.305014e-02	ci right 2.552950e-02	k: 1456	n:60000
KS ci ratio: 5.106502e-03	ci left: 9.052548e-01	ci right 9.099057e-01	k: 54456	n:60000
MGC26647   60000 perm   13 sec   (4748 perm/sec)   p_kst 9.076000e-01   p_cons 2.426667e-02   p_joint 9.215000e-02

Joint ci ratio: 4.938156e-02	ci left: 8.054270e-02	ci right 8.463484e-02	k: 5780	n:70000
Cons ci ratio: 9.388347e-02	ci left: 2.315798e-02	ci right 2.545311e-02	k: 1700	n:70000
KS ci ratio: 4.720414e-03	ci left: 9.056905e-01	ci right 9.099899e-01	k: 63550	n:70000
MGC26647   70000 perm   15 sec   (4647 perm/sec)   p_kst 9.078571e-01   p_cons 2.428571e-02   p_joint 8.257143e-02

Outputting figure to mutsig2_images.part000000000105/MGC26647.5_766_70000_0.90786_0.024286_0.082571.png
                gene_name: MGC26647
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.085 

Current progress: 33 percent done.
MID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
Cons ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
MID2   10000 perm   2 sec   (5082 perm/sec)   p_kst 3.480000e-01   p_cons 5.900000e-02   p_joint 2.570000e-01

Joint ci ratio: 6.255865e-02	ci left: 1.589418e-01	ci right 1.692560e-01	k: 3281	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 3.828605e-02	ci left: 3.372652e-01	ci right 3.504803e-01	k: 6877	n:20000
MID2   20000 perm   4 sec   (4605 perm/sec)   p_kst 3.438500e-01   p_cons 5.405000e-02   p_joint 1.640500e-01

Joint ci ratio: 5.112267e-02	ci left: 1.596611e-01	ci right 1.680708e-01	k: 4915	n:30000
Cons ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
KS ci ratio: 3.141574e-02	ci left: 3.362656e-01	ci right 3.470318e-01	k: 10249	n:30000
MID2   30000 perm   7 sec   (4415 perm/sec)   p_kst 3.416333e-01   p_cons 5.993333e-02   p_joint 1.638333e-01

Outputting figure to mutsig2_images.part000000000105/MID2.5_2248_30000_0.34163_0.059933_0.16383.png
                gene_name: MID2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 35 percent done.
MFI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
Cons ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
KS ci ratio: 2.826493e-02	ci left: 6.485067e-01	ci right 6.672012e-01	k: 6579	n:10000
MFI2   10000 perm   2 sec   (5270 perm/sec)   p_kst 6.579000e-01   p_cons 4.046000e-01   p_joint 7.024000e-01

Outputting figure to mutsig2_images.part000000000105/MFI2.4_2482_10000_0.6579_0.4046_0.7024.png
                gene_name: MFI2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 37 percent done.
MFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.500427e-02	ci left: 5.464973e-01	ci right 5.660699e-01	k: 5563	n:10000
Cons ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
KS ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
MFN1   10000 perm   2 sec   (5467 perm/sec)   p_kst 5.748000e-01   p_cons 3.607000e-01   p_joint 5.563000e-01

Outputting figure to mutsig2_images.part000000000105/MFN1.4_2294_10000_0.5748_0.3607_0.5563.png
                gene_name: MFN1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
MFSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
MFSD1   10000 perm   2 sec   (5757 perm/sec)   p_kst 1.825000e-01   p_cons 5.535000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD1.4_1609_10000_0.1825_0.5535_0.3624.png
                gene_name: MFSD1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 40 percent done.
MGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
Cons ci ratio: 3.861067e-02	ci left: 4.976503e-01	ci right 5.173453e-01	k: 5075	n:10000
KS ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
MGAT3   10000 perm   2 sec   (6134 perm/sec)   p_kst 2.907000e-01   p_cons 5.075000e-01   p_joint 4.390000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT3.4_1606_10000_0.2907_0.5075_0.439.png
                gene_name: MGAT3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 42 percent done.
MGC42105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
Cons ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
KS ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
MGC42105   10000 perm   2 sec   (5817 perm/sec)   p_kst 3.776000e-01   p_cons 4.222000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000105/MGC42105.4_1323_10000_0.3776_0.4222_0.5007.png
                gene_name: MGC42105
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 44 percent done.
MKI67IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
MKI67IP   10000 perm   2 sec   (5726 perm/sec)   p_kst 9.900000e-03   p_cons 6.035000e-01   p_joint 5.840000e-02

Joint ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
Cons ci ratio: 2.236782e-02	ci left: 5.987868e-01	ci right 6.123825e-01	k: 12112	n:20000
KS ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
MKI67IP   20000 perm   4 sec   (5349 perm/sec)   p_kst 9.750000e-03   p_cons 6.056000e-01   p_joint 4.560000e-02

Joint ci ratio: 8.141327e-02	ci left: 6.880553e-02	ci right 7.467774e-02	k: 2151	n:30000
Cons ci ratio: 1.839510e-02	ci left: 5.966018e-01	ci right 6.077118e-01	k: 18065	n:30000
KS ci ratio: 2.323291e-01	ci left: 8.307694e-03	ci right 1.052221e-02	k: 281	n:30000
MKI67IP   30000 perm   6 sec   (5190 perm/sec)   p_kst 9.366667e-03   p_cons 6.021667e-01   p_joint 7.170000e-02

Joint ci ratio: 1.262061e-01	ci left: 2.206187e-02	ci right 2.505785e-02	k: 941	n:40000
Cons ci ratio: 1.591885e-02	ci left: 5.977094e-01	ci right 6.073257e-01	k: 24101	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
MKI67IP   40000 perm   8 sec   (5067 perm/sec)   p_kst 9.975000e-03   p_cons 6.025250e-01   p_joint 2.352500e-02

Joint ci ratio: 1.045238e-01	ci left: 2.592813e-02	ci right 2.880710e-02	k: 1367	n:50000
Cons ci ratio: 1.419097e-02	ci left: 5.998175e-01	ci right 6.084104e-01	k: 30206	n:50000
KS ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
MKI67IP   50000 perm   10 sec   (4960 perm/sec)   p_kst 1.006000e-02   p_cons 6.041200e-01   p_joint 2.734000e-02

Joint ci ratio: 9.778818e-02	ci left: 2.480639e-02	ci right 2.737307e-02	k: 1564	n:60000
Cons ci ratio: 1.291587e-02	ci left: 6.016260e-01	ci right 6.094638e-01	k: 36333	n:60000
KS ci ratio: 1.648740e-01	ci left: 8.563417e-03	ci right 1.011793e-02	k: 559	n:60000
MKI67IP   60000 perm   12 sec   (4845 perm/sec)   p_kst 9.316667e-03   p_cons 6.055500e-01   p_joint 2.606667e-02

Joint ci ratio: 7.740515e-02	ci left: 3.397314e-02	ci right 3.672269e-02	k: 2473	n:70000
Cons ci ratio: 1.195477e-02	ci left: 6.020396e-01	ci right 6.092944e-01	k: 42397	n:70000
KS ci ratio: 1.417961e-01	ci left: 1.003371e-02	ci right 1.157867e-02	k: 755	n:70000
MKI67IP   70000 perm   15 sec   (4737 perm/sec)   p_kst 1.078571e-02   p_cons 6.056714e-01   p_joint 3.532857e-02

Joint ci ratio: 7.534834e-02	ci left: 3.149057e-02	ci right 3.396846e-02	k: 2617	n:80000
Cons ci ratio: 1.116271e-02	ci left: 6.031297e-01	ci right 6.099125e-01	k: 48522	n:80000
KS ci ratio: 1.327159e-01	ci left: 1.007112e-02	ci right 1.151469e-02	k: 862	n:80000
MKI67IP   80000 perm   17 sec   (4641 perm/sec)   p_kst 1.077500e-02   p_cons 6.065250e-01   p_joint 3.271250e-02

Joint ci ratio: 5.648846e-02	ci left: 4.935239e-02	ci right 5.223220e-02	k: 4570	n:90000
Cons ci ratio: 1.054448e-02	ci left: 6.024093e-01	ci right 6.088061e-01	k: 54505	n:90000
KS ci ratio: 1.257079e-01	ci left: 1.001654e-02	ci right 1.137083e-02	k: 961	n:90000
MKI67IP   90000 perm   20 sec   (4543 perm/sec)   p_kst 1.067778e-02   p_cons 6.056111e-01   p_joint 5.077778e-02

Joint ci ratio: 5.524173e-02	ci left: 4.661413e-02	ci right 4.927217e-02	k: 4793	n:100000
Cons ci ratio: 9.996497e-03	ci left: 6.029033e-01	ci right 6.089705e-01	k: 60594	n:100000
KS ci ratio: 1.197614e-01	ci left: 9.964795e-03	ci right 1.124383e-02	k: 1059	n:100000
MKI67IP   100000 perm   22 sec   (4457 perm/sec)   p_kst 1.059000e-02   p_cons 6.059400e-01   p_joint 4.793000e-02

Joint ci ratio: 5.156805e-02	ci left: 4.862061e-02	ci right 5.120319e-02	k: 5489	n:110000
Cons ci ratio: 9.551701e-03	ci left: 6.020219e-01	ci right 6.078089e-01	k: 66541	n:110000
KS ci ratio: 1.141881e-01	ci left: 9.994362e-03	ci right 1.121347e-02	k: 1165	n:110000
MKI67IP   110000 perm   25 sec   (4379 perm/sec)   p_kst 1.059091e-02   p_cons 6.049182e-01   p_joint 4.990000e-02

Joint ci ratio: 4.856338e-02	ci left: 5.024796e-02	ci right 5.275711e-02	k: 6179	n:120000
Cons ci ratio: 9.152749e-03	ci left: 6.017435e-01	ci right 6.072847e-01	k: 72542	n:120000
KS ci ratio: 1.094573e-01	ci left: 9.995829e-03	ci right 1.116134e-02	k: 1268	n:120000
MKI67IP   120000 perm   28 sec   (4304 perm/sec)   p_kst 1.056667e-02   p_cons 6.045167e-01   p_joint 5.149167e-02

Joint ci ratio: 4.911699e-02	ci left: 4.555931e-02	ci right 4.786096e-02	k: 6071	n:130000
Cons ci ratio: 8.783807e-03	ci left: 6.023904e-01	ci right 6.077126e-01	k: 78657	n:130000
KS ci ratio: 1.056988e-01	ci left: 9.915549e-03	ci right 1.102953e-02	k: 1360	n:130000
MKI67IP   130000 perm   31 sec   (4231 perm/sec)   p_kst 1.046154e-02   p_cons 6.050538e-01   p_joint 4.670000e-02

Joint ci ratio: 4.840416e-02	ci left: 4.366578e-02	ci right 4.583884e-02	k: 6264	n:140000
Cons ci ratio: 8.462464e-03	ci left: 6.025909e-01	ci right 6.077190e-01	k: 84722	n:140000
KS ci ratio: 1.013898e-01	ci left: 1.002836e-02	ci right 1.110634e-02	k: 1478	n:140000
MKI67IP   140000 perm   34 sec   (4162 perm/sec)   p_kst 1.055714e-02   p_cons 6.051571e-01   p_joint 4.474286e-02

Joint ci ratio: 4.578771e-02	ci left: 4.551898e-02	ci right 4.765859e-02	k: 6987	n:150000
Cons ci ratio: 8.173419e-03	ci left: 6.028011e-01	ci right 6.077549e-01	k: 90792	n:150000
KS ci ratio: 9.825446e-02	ci left: 9.983813e-03	ci right 1.102191e-02	k: 1574	n:150000
MKI67IP   150000 perm   37 sec   (4098 perm/sec)   p_kst 1.049333e-02   p_cons 6.052800e-01   p_joint 4.658000e-02

Outputting figure to mutsig2_images.part000000000105/MKI67IP.4_910_150000_0.010493_0.60528_0.04658.png
                gene_name: MKI67IP
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.048 

Current progress: 46 percent done.
MKKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
KS ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
MKKS   10000 perm   2 sec   (5652 perm/sec)   p_kst 1.808000e-01   p_cons 1.155000e-01   p_joint 1.356000e-01

Joint ci ratio: 6.877018e-02	ci left: 1.349230e-01	ci right 1.445820e-01	k: 2794	n:20000
Cons ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
KS ci ratio: 5.783296e-02	ci left: 1.813698e-01	ci right 1.922214e-01	k: 3735	n:20000
MKKS   20000 perm   4 sec   (5053 perm/sec)   p_kst 1.867500e-01   p_cons 1.177000e-01   p_joint 1.397000e-01

Outputting figure to mutsig2_images.part000000000105/MKKS.4_1729_20000_0.18675_0.1177_0.1397.png
                gene_name: MKKS
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 48 percent done.
MKLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
Cons ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
KS ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
MKLN1   10000 perm   2 sec   (5548 perm/sec)   p_kst 3.457000e-01   p_cons 8.230000e-02   p_joint 2.426000e-01

Joint ci ratio: 3.649757e-02	ci left: 3.590698e-01	ci right 3.724692e-01	k: 7315	n:20000
Cons ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
KS ci ratio: 3.761693e-02	ci left: 3.452286e-01	ci right 3.585145e-01	k: 7037	n:20000
MKLN1   20000 perm   4 sec   (4986 perm/sec)   p_kst 3.518500e-01   p_cons 8.745000e-02   p_joint 3.657500e-01

Outputting figure to mutsig2_images.part000000000105/MKLN1.4_2313_20000_0.35185_0.08745_0.36575.png
                gene_name: MKLN1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
MKS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
Cons ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
MKS1   10000 perm   2 sec   (5762 perm/sec)   p_kst 6.129000e-01   p_cons 1.542000e-01   p_joint 4.521000e-01

Outputting figure to mutsig2_images.part000000000105/MKS1.4_1806_10000_0.6129_0.1542_0.4521.png
                gene_name: MKS1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 52 percent done.
MFRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
KS ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
MFRP   10000 perm   2 sec   (5928 perm/sec)   p_kst 6.895000e-01   p_cons 6.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFRP.3_1792_10000_0.6895_0.6867_1.png
                gene_name: MFRP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
MGAT4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
Cons ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
KS ci ratio: 2.640853e-02	ci left: 6.786140e-01	ci right 6.968765e-01	k: 6878	n:10000
MGAT4A   10000 perm   2 sec   (5963 perm/sec)   p_kst 6.878000e-01   p_cons 6.050000e-02   p_joint 8.555000e-01

Joint ci ratio: 1.931407e-02	ci left: 6.665994e-01	ci right 6.796502e-01	k: 13463	n:20000
Cons ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
KS ci ratio: 1.857213e-02	ci left: 6.836888e-01	ci right 6.965558e-01	k: 13803	n:20000
MGAT4A   20000 perm   4 sec   (5331 perm/sec)   p_kst 6.901500e-01   p_cons 5.970000e-02   p_joint 6.731500e-01

Joint ci ratio: 2.202069e-02	ci left: 5.079931e-01	ci right 5.193376e-01	k: 15410	n:30000
Cons ci ratio: 9.051919e-02	ci left: 5.616410e-02	ci right 6.152173e-02	k: 1764	n:30000
KS ci ratio: 1.517665e-02	ci left: 6.845307e-01	ci right 6.950325e-01	k: 20694	n:30000
MGAT4A   30000 perm   6 sec   (5068 perm/sec)   p_kst 6.898000e-01   p_cons 5.880000e-02   p_joint 5.136667e-01

Outputting figure to mutsig2_images.part000000000105/MGAT4A.3_1770_30000_0.6898_0.0588_0.51367.png
                gene_name: MGAT4A
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 56 percent done.
MGST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
MGST3   10000 perm   2 sec   (6643 perm/sec)   p_kst 4.118000e-01   p_cons 7.543000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000105/MGST3.3_479_10000_0.4118_0.7543_0.5427.png
                gene_name: MGST3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 58 percent done.
MIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
Cons ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
KS ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
MIB2   10000 perm   2 sec   (5353 perm/sec)   p_kst 6.124000e-01   p_cons 9.000000e-02   p_joint 3.938000e-01

Joint ci ratio: 4.634086e-02	ci left: 2.573548e-01	ci right 2.696141e-01	k: 5269	n:20000
Cons ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
KS ci ratio: 2.215071e-02	ci left: 6.034504e-01	ci right 6.170175e-01	k: 12205	n:20000
MIB2   20000 perm   4 sec   (4761 perm/sec)   p_kst 6.102500e-01   p_cons 9.335000e-02   p_joint 2.634500e-01

Outputting figure to mutsig2_images.part000000000105/MIB2.3_3293_20000_0.61025_0.09335_0.26345.png
                gene_name: MIB2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 60 percent done.
MICAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
MICAL1   10000 perm   2 sec   (5515 perm/sec)   p_kst 7.775000e-01   p_cons 6.547000e-01   p_joint 9.510000e-01

Outputting figure to mutsig2_images.part000000000105/MICAL1.3_3300_10000_0.7775_0.6547_0.951.png
                gene_name: MICAL1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 62 percent done.
MICALCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
Cons ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
KS ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
MICALCL   10000 perm   2 sec   (5881 perm/sec)   p_kst 7.045000e-01   p_cons 6.982000e-01   p_joint 8.788000e-01

Outputting figure to mutsig2_images.part000000000105/MICALCL.3_2120_10000_0.7045_0.6982_0.8788.png
                gene_name: MICALCL
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 63 percent done.
MICALL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
KS ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
MICALL2   10000 perm   2 sec   (4930 perm/sec)   p_kst 4.347000e-01   p_cons 1.640000e-01   p_joint 2.178000e-01

Outputting figure to mutsig2_images.part000000000105/MICALL2.3_2783_10000_0.4347_0.164_0.2178.png
                gene_name: MICALL2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 65 percent done.
MID1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
Cons ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
MID1   10000 perm   2 sec   (6143 perm/sec)   p_kst 2.790000e-02   p_cons 1.133000e-01   p_joint 4.880000e-02

Joint ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
Cons ci ratio: 7.588973e-02	ci left: 1.132155e-01	ci right 1.221960e-01	k: 2353	n:20000
KS ci ratio: 1.576109e-01	ci left: 2.763127e-02	ci right 3.240667e-02	k: 599	n:20000
MID1   20000 perm   4 sec   (5480 perm/sec)   p_kst 2.995000e-02   p_cons 1.176500e-01   p_joint 5.195000e-02

Joint ci ratio: 9.140284e-02	ci left: 5.512030e-02	ci right 6.043241e-02	k: 1732	n:30000
Cons ci ratio: 6.220393e-02	ci left: 1.132519e-01	ci right 1.205558e-01	k: 3506	n:30000
KS ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
MID1   30000 perm   6 sec   (5228 perm/sec)   p_kst 2.936667e-02   p_cons 1.168667e-01   p_joint 5.773333e-02

Joint ci ratio: 8.355913e-02	ci left: 4.996678e-02	ci right 5.434852e-02	k: 2085	n:40000
Cons ci ratio: 5.331667e-02	ci left: 1.158669e-01	ci right 1.222385e-01	k: 4761	n:40000
KS ci ratio: 1.123694e-01	ci left: 2.786356e-02	ci right 3.120520e-02	k: 1180	n:40000
MID1   40000 perm   8 sec   (5060 perm/sec)   p_kst 2.950000e-02   p_cons 1.190250e-01   p_joint 5.212500e-02

Joint ci ratio: 6.977250e-02	ci left: 5.730443e-02	ci right 6.146691e-02	k: 2968	n:50000
Cons ci ratio: 4.781800e-02	ci left: 1.156397e-01	ci right 1.213247e-01	k: 5923	n:50000
KS ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
MID1   50000 perm   10 sec   (4931 perm/sec)   p_kst 2.996000e-02   p_cons 1.184600e-01   p_joint 5.936000e-02

Outputting figure to mutsig2_images.part000000000105/MID1.2_2040_50000_0.02996_0.11846_0.05936.png
                gene_name: MID1
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 67 percent done.
MIER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
Cons ci ratio: 1.546883e-02	ci left: 8.584522e-01	ci right 8.719343e-01	k: 8653	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
MIER2   10000 perm   2 sec   (6091 perm/sec)   p_kst 1.919000e-01   p_cons 8.653000e-01   p_joint 5.230000e-01

Outputting figure to mutsig2_images.part000000000105/MIER2.3_1694_10000_0.1919_0.8653_0.523.png
                gene_name: MIER2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 69 percent done.
MINA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
Cons ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
KS ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
MINA   10000 perm   2 sec   (6025 perm/sec)   p_kst 1.839000e-01   p_cons 8.632000e-01   p_joint 4.155000e-01

Outputting figure to mutsig2_images.part000000000105/MINA.3_1434_10000_0.1839_0.8632_0.4155.png
                gene_name: MINA
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 71 percent done.
MKX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
Cons ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
MKX   10000 perm   2 sec   (6353 perm/sec)   p_kst 3.237000e-01   p_cons 2.362000e-01   p_joint 3.879000e-01

Outputting figure to mutsig2_images.part000000000105/MKX.3_1083_10000_0.3237_0.2362_0.3879.png
                gene_name: MKX
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 73 percent done.
MFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
Cons ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
MFN2   10000 perm   2 sec   (6015 perm/sec)   p_kst 4.382000e-01   p_cons 3.921000e-01   p_joint 8.849000e-01

Outputting figure to mutsig2_images.part000000000105/MFN2.2_2342_10000_0.4382_0.3921_0.8849.png
                gene_name: MFN2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 75 percent done.
MFSD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
Cons ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KS ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
MFSD10   10000 perm   2 sec   (6425 perm/sec)   p_kst 2.224000e-01   p_cons 4.164000e-01   p_joint 6.508000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD10.2_1416_10000_0.2224_0.4164_0.6508.png
                gene_name: MFSD10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 77 percent done.
MFSD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.297085e-03	ci left: 9.530476e-01	ci right 9.610834e-01	k: 9572	n:10000
Cons ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
KS ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
MFSD11   10000 perm   2 sec   (6477 perm/sec)   p_kst 6.954000e-01   p_cons 1.410000e-01   p_joint 9.572000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD11.2_1402_10000_0.6954_0.141_0.9572.png
                gene_name: MFSD11
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 79 percent done.
MFSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
Cons ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
KS ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
MFSD4   10000 perm   2 sec   (6339 perm/sec)   p_kst 9.694000e-01   p_cons 5.372000e-01   p_joint 8.073000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD4.2_1585_10000_0.9694_0.5372_0.8073.png
                gene_name: MFSD4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 81 percent done.
MFSD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
Cons ci ratio: 1.454625e-01	ci left: 6.275582e-02	ci right 7.269780e-02	k: 676	n:10000
KS ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
MFSD6   10000 perm   2 sec   (6171 perm/sec)   p_kst 8.187000e-01   p_cons 6.760000e-02   p_joint 9.023000e-01

Joint ci ratio: 4.832532e-02	ci left: 2.415310e-01	ci right 2.535424e-01	k: 4950	n:20000
Cons ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
KS ci ratio: 1.291896e-02	ci left: 8.161719e-01	ci right 8.268345e-01	k: 16431	n:20000
MFSD6   20000 perm   4 sec   (5496 perm/sec)   p_kst 8.215500e-01   p_cons 6.530000e-02   p_joint 2.475000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.590647e-02	ci left: 6.210525e-02	ci right 6.771271e-02	k: 1946	n:30000
KS ci ratio: 1.052957e-02	ci left: 8.176911e-01	ci right 8.263798e-01	k: 24662	n:30000
MFSD6   30000 perm   6 sec   (5238 perm/sec)   p_kst 8.220667e-01   p_cons 6.486667e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFSD6.2_2400_30000_0.82207_0.064867_1.png
                gene_name: MFSD6
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MFSD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
Cons ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
KS ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
MFSD9   10000 perm   2 sec   (6408 perm/sec)   p_kst 3.158000e-01   p_cons 7.217000e-01   p_joint 8.573000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD9.2_1449_10000_0.3158_0.7217_0.8573.png
                gene_name: MFSD9
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 85 percent done.
MGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
Cons ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
MGAT1   10000 perm   1 sec   (6704 perm/sec)   p_kst 4.578000e-01   p_cons 5.715000e-01   p_joint 9.048000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT1.2_1342_10000_0.4578_0.5715_0.9048.png
                gene_name: MGAT1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 87 percent done.
MGC87042
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999634e-03	ci left: 9.740817e-01	ci right 9.800359e-01	k: 9772	n:10000
Cons ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
KS ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
MGC87042   10000 perm   2 sec   (6592 perm/sec)   p_kst 7.400000e-01   p_cons 8.409000e-01   p_joint 9.772000e-01

Outputting figure to mutsig2_images.part000000000105/MGC87042.2_1082_10000_0.74_0.8409_0.9772.png
                gene_name: MGC87042
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 88 percent done.
MINK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
Cons ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
MINK1   10000 perm   2 sec   (5508 perm/sec)   p_kst 9.321000e-01   p_cons 1.130000e-02   p_joint 1.328000e-01

Joint ci ratio: 8.747182e-02	ci left: 8.724471e-02	ci right 9.527459e-02	k: 1824	n:20000
Cons ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
KS ci ratio: 7.492109e-03	ci left: 9.283716e-01	ci right 9.354022e-01	k: 18639	n:20000
MINK1   20000 perm   4 sec   (4946 perm/sec)   p_kst 9.319500e-01   p_cons 1.935000e-02   p_joint 9.120000e-02

Joint ci ratio: 3.190372e-02	ci left: 3.293930e-01	ci right 3.401057e-01	k: 10042	n:30000
Cons ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
KS ci ratio: 6.082124e-03	ci left: 9.297721e-01	ci right 9.354771e-01	k: 27980	n:30000
MINK1   30000 perm   6 sec   (4737 perm/sec)   p_kst 9.326667e-01   p_cons 2.010000e-02   p_joint 3.347333e-01

Joint ci ratio: 1.740563e-02	ci left: 5.541928e-01	ci right 5.639487e-01	k: 22363	n:40000
Cons ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
KS ci ratio: 5.277161e-03	ci left: 9.299211e-01	ci right 9.348659e-01	k: 37297	n:40000
MINK1   40000 perm   9 sec   (4589 perm/sec)   p_kst 9.324250e-01   p_cons 2.042500e-02   p_joint 5.590750e-01

Joint ci ratio: 6.130085e-02	ci left: 7.327782e-02	ci right 7.793160e-02	k: 3779	n:50000
Cons ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
KS ci ratio: 4.758177e-03	ci left: 9.291492e-01	ci right 9.336005e-01	k: 46570	n:50000
MINK1   50000 perm   11 sec   (4477 perm/sec)   p_kst 9.314000e-01   p_cons 2.046000e-02   p_joint 7.558000e-02

Joint ci ratio: 5.447957e-02	ci left: 7.726520e-02	ci right 8.160892e-02	k: 4765	n:60000
Cons ci ratio: 1.110815e-01	ci left: 1.920272e-02	ci right 2.147735e-02	k: 1219	n:60000
KS ci ratio: 4.341260e-03	ci left: 9.294157e-01	ci right 9.334758e-01	k: 55888	n:60000
MINK1   60000 perm   14 sec   (4380 perm/sec)   p_kst 9.314667e-01   p_cons 2.031667e-02   p_joint 7.941667e-02

Joint ci ratio: 5.089883e-02	ci left: 7.612260e-02	ci right 8.011245e-02	k: 5467	n:70000
Cons ci ratio: 1.030389e-01	ci left: 1.921237e-02	ci right 2.131337e-02	k: 1417	n:70000
KS ci ratio: 4.025317e-03	ci left: 9.293722e-01	ci right 9.331348e-01	k: 65189	n:70000
MINK1   70000 perm   16 sec   (4298 perm/sec)   p_kst 9.312714e-01   p_cons 2.024286e-02   p_joint 7.810000e-02

Joint ci ratio: 4.769081e-02	ci left: 7.601478e-02	ci right 7.974090e-02	k: 6229	n:80000
Cons ci ratio: 9.670654e-02	ci left: 1.915088e-02	ci right 2.110914e-02	k: 1609	n:80000
KS ci ratio: 3.753790e-03	ci left: 9.298921e-01	ci right 9.334016e-01	k: 74533	n:80000
MINK1   80000 perm   19 sec   (4222 perm/sec)   p_kst 9.316625e-01   p_cons 2.011250e-02   p_joint 7.786250e-02

Outputting figure to mutsig2_images.part000000000105/MINK1.2_3894_80000_0.93166_0.020112_0.077863.png
                gene_name: MINK1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 90 percent done.
MKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
Cons ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
MKL1   10000 perm   2 sec   (5748 perm/sec)   p_kst 8.362000e-01   p_cons 4.097000e-01   p_joint 9.723000e-01

Outputting figure to mutsig2_images.part000000000105/MKL1.2_2844_10000_0.8362_0.4097_0.9723.png
                gene_name: MKL1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 92 percent done.
MKL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
Cons ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
KS ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
MKL2   10000 perm   2 sec   (5588 perm/sec)   p_kst 6.730000e-02   p_cons 9.842000e-01   p_joint 9.599000e-01

Joint ci ratio: 1.107286e-02	ci left: 8.575482e-01	ci right 8.671462e-01	k: 17248	n:20000
Cons ci ratio: 3.539708e-03	ci left: 9.821639e-01	ci right 9.856933e-01	k: 19680	n:20000
KS ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
MKL2   20000 perm   4 sec   (5031 perm/sec)   p_kst 6.945000e-02   p_cons 9.840000e-01   p_joint 8.624000e-01

Joint ci ratio: 3.761753e-02	ci left: 2.607411e-01	ci right 2.707710e-01	k: 7972	n:30000
Cons ci ratio: 3.052288e-03	ci left: 9.806048e-01	ci right 9.836341e-01	k: 29465	n:30000
KS ci ratio: 8.247087e-02	ci left: 6.713787e-02	ci right 7.294573e-02	k: 2100	n:30000
MKL2   30000 perm   6 sec   (4811 perm/sec)   p_kst 7.000000e-02   p_cons 9.821667e-01   p_joint 2.657333e-01

Outputting figure to mutsig2_images.part000000000105/MKL2.2_3210_30000_0.07_0.98217_0.26573.png
                gene_name: MKL2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 94 percent done.
MKNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
MKNK1   10000 perm   2 sec   (6572 perm/sec)   p_kst 5.669000e-01   p_cons 2.000000e-02   p_joint 4.100000e-02

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
KS ci ratio: 2.405890e-02	ci left: 5.634045e-01	ci right 5.771750e-01	k: 11406	n:20000
MKNK1   20000 perm   3 sec   (5918 perm/sec)   p_kst 5.703000e-01   p_cons 2.100000e-02   p_joint 1.650000e-02

Joint ci ratio: 1.712440e-01	ci left: 1.569513e-02	ci right 1.866610e-02	k: 514	n:30000
Cons ci ratio: 1.534099e-01	ci left: 1.966392e-02	ci right 2.296302e-02	k: 638	n:30000
KS ci ratio: 1.968853e-02	ci left: 5.635734e-01	ci right 5.748132e-01	k: 17076	n:30000
MKNK1   30000 perm   5 sec   (5667 perm/sec)   p_kst 5.692000e-01   p_cons 2.126667e-02   p_joint 1.713333e-02

Joint ci ratio: 1.305284e-01	ci left: 2.060901e-02	ci right 2.351095e-02	k: 881	n:40000
Cons ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
KS ci ratio: 1.698497e-02	ci left: 5.662324e-01	ci right 5.759573e-01	k: 22844	n:40000
MKNK1   40000 perm   7 sec   (5493 perm/sec)   p_kst 5.711000e-01   p_cons 2.057500e-02   p_joint 2.202500e-02

Joint ci ratio: 1.169928e-01	ci left: 2.067381e-02	ci right 2.326210e-02	k: 1097	n:50000
Cons ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
KS ci ratio: 1.521984e-02	ci left: 5.658468e-01	ci right 5.745450e-01	k: 28510	n:50000
MKNK1   50000 perm   9 sec   (5346 perm/sec)   p_kst 5.702000e-01   p_cons 2.052000e-02   p_joint 2.194000e-02

Joint ci ratio: 1.062076e-01	ci left: 2.101969e-02	ci right 2.339350e-02	k: 1331	n:60000
Cons ci ratio: 1.096229e-01	ci left: 1.972161e-02	ci right 2.202506e-02	k: 1251	n:60000
KS ci ratio: 1.393258e-02	ci left: 5.648591e-01	ci right 5.728009e-01	k: 34130	n:60000
MKNK1   60000 perm   11 sec   (5222 perm/sec)   p_kst 5.688333e-01   p_cons 2.085000e-02   p_joint 2.218333e-02

Joint ci ratio: 9.832922e-02	ci left: 2.110731e-02	ci right 2.330397e-02	k: 1553	n:70000
Cons ci ratio: 1.018359e-01	ci left: 1.967196e-02	ci right 2.179660e-02	k: 1450	n:70000
KS ci ratio: 1.286620e-02	ci left: 5.664083e-01	ci right 5.737573e-01	k: 39906	n:70000
MKNK1   70000 perm   14 sec   (5109 perm/sec)   p_kst 5.700857e-01   p_cons 2.071429e-02   p_joint 2.218571e-02

Joint ci ratio: 9.232481e-02	ci left: 2.101910e-02	ci right 2.306576e-02	k: 1762	n:80000
Cons ci ratio: 9.541425e-02	ci left: 1.967572e-02	ci right 2.165926e-02	k: 1652	n:80000
KS ci ratio: 1.203675e-02	ci left: 5.665856e-01	ci right 5.734593e-01	k: 45602	n:80000
MKNK1   80000 perm   16 sec   (4991 perm/sec)   p_kst 5.700250e-01   p_cons 2.065000e-02   p_joint 2.202500e-02

Outputting figure to mutsig2_images.part000000000105/MKNK1.2_1450_80000_0.57003_0.02065_0.022025.png
                gene_name: MKNK1
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 96 percent done.
MKRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
MKRN1   10000 perm   2 sec   (6577 perm/sec)   p_kst 2.036000e-01   p_cons 2.420000e-01   p_joint 9.412000e-01

Outputting figure to mutsig2_images.part000000000105/MKRN1.2_1485_10000_0.2036_0.242_0.9412.png
                gene_name: MKRN1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 98 percent done.
MKRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
Cons ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
MKRN2   10000 perm   2 sec   (6602 perm/sec)   p_kst 2.296000e-01   p_cons 2.265000e-01   p_joint 6.774000e-01

Outputting figure to mutsig2_images.part000000000105/MKRN2.2_1283_10000_0.2296_0.2265_0.6774.png
                gene_name: MKRN2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000105
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 105 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 4422184: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000106> was used as the working directory.
Started at Wed Oct 24 18:00:06 2012
Results reported at Wed Oct 24 21:32:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000106.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000106.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 106  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000106.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12864.96 sec.
    Max Memory :      5335 MB
    Max Swap   :      7779 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
106
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 106
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 106: processing genes 9500 - 9590
Calculating significance of each gene.
Using projection method.
9500	MLANA	2.209096e-01
9501	MLC1	1.505410e-01
9502	MLEC	7.382282e-02
9503	MLF1	2.462378e-01
9504	MLF1IP	1
9505	MLF2	3.321924e-01
9506	MLH1	1
9507	MLH3	9.819129e-01
9508	MLKL	5.361725e-01
9509	MLL	9.999109e-01
9510	MLL2	9.999674e-01
9511	MLL3	9.987550e-01
9512	MLL4	9.998494e-01
9513	MLL5	9.999771e-01
9514	MLLT1	1
9515	MLLT10	9.574748e-01
9516	MLLT11	3.390794e-01
9517	MLLT3	8.742122e-01
9518	MLLT4	1
9519	MLLT6	9.514082e-01
9520	MLN	1
9521	MLNR	5.990965e-01
9522	MLPH	9.561927e-01
9523	MLST8	7.527351e-01
9524	MLX	5.167320e-01
9525	MLXIP	9.330604e-01
9526	MLXIPL	1
9527	MLYCD	6.446188e-01
9528	MMAA	4.402441e-01
9529	MMAB	1
9530	MMACHC	1
9531	MMADHC	6.603915e-01
9532	MMD	5.810348e-01
9533	MMD2	3.224530e-02
9534	MME	8.748752e-01
9535	MMEL1	9.614816e-01
9536	MMGT1	1
9537	MMP1	1.413233e-02
9538	MMP10	3.423547e-01
9539	MMP11	8.729499e-01
9540	MMP12	3.092077e-01
9541	MMP13	1.076351e-01
9542	MMP14	6.510618e-01
9543	MMP15	1
9544	MMP16	8.586266e-01
9545	MMP17	1
9546	MMP19	2.365608e-01
9547	MMP2	1.994061e-02
9548	MMP20	7.744674e-01
9549	MMP21	8.585591e-01
9550	MMP24	9.587608e-01
9551	MMP25	1.723168e-01
9552	MMP26	1
9553	MMP27	8.448889e-01
9554	MMP28	1
9555	MMP3	4.079322e-01
9556	MMP7	1.973932e-02
9557	MMP8	6.180106e-01
9558	MMP9	1.570724e-02
9559	MMRN1	8.919653e-01
9560	MMRN2	1
9561	MMS19	6.027297e-01
9562	MN1	5.426583e-01
9563	MNAT1	5.639932e-01
9564	MND1	3.660604e-01
9565	MNDA	3.876205e-02
9566	MNS1	7.277838e-01
9567	MNT	1
9568	MNX1	6.075572e-01
9569	MOAP1	4.672247e-01
9570	MOB2	1
9571	MOBKL1A	3.224862e-01
9572	MOBKL1B	1
9573	MOBKL2A	1
9574	MOBKL2B	4.432561e-01
9575	MOBKL2C	1
9576	MOBKL3	6.618983e-01
9577	MOBP	1
9578	MOCOS	1.373482e-01
9579	MOCS1	7.380361e-01
9580	MOCS2	1
9581	MOCS3	1
9582	MOG	8.248841e-01
9583	MOGAT1	4.772727e-01
9584	MOGAT2	8.238417e-01
9585	MOGAT3	4.881205e-01
9586	MOGS	1
9587	MON1A	7.690849e-01
9588	MON1B	9.771334e-01
9589	MON2	9.997149e-01
9590	MORC1	9.290137e-01
Done

Running MutSig 2:
Scatter job 106: processing genes 9500 - 9590
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MLL3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
MLL3   10000 perm   5 sec   (2192 perm/sec)   p_kst 3.000000e-04   p_cons 1.148000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
MLL3   20000 perm   12 sec   (1733 perm/sec)   p_kst 2.500000e-04   p_cons 1.130000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.382242e-02	ci left: 1.081237e-01	ci right 1.152850e-01	k: 3350	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
MLL3   30000 perm   17 sec   (1807 perm/sec)   p_kst 4.333333e-04   p_cons 1.116667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.489924e-02	ci left: 1.099378e-01	ci right 1.161685e-01	k: 4521	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
MLL3   40000 perm   22 sec   (1843 perm/sec)   p_kst 4.250000e-04   p_cons 1.130250e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 4.921889e-02	ci left: 1.098023e-01	ci right 1.153628e-01	k: 5628	n:50000
KS ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
MLL3   50000 perm   27 sec   (1860 perm/sec)   p_kst 5.800000e-04   p_cons 1.125600e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 4.867956e-02	ci left: 9.515411e-02	ci right 9.991823e-02	k: 5851	n:60000
KS ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
MLL3   60000 perm   32 sec   (1865 perm/sec)   p_kst 5.333333e-04   p_cons 9.751667e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.523146e-02	ci left: 9.470402e-02	ci right 9.910089e-02	k: 6782	n:70000
KS ci ratio: 6.196249e-01	ci left: 3.962121e-04	ci right 7.615547e-04	k: 39	n:70000
MLL3   70000 perm   38 sec   (1862 perm/sec)   p_kst 5.571429e-04   p_cons 9.688571e-02   p_joint 0

Joint ci ratio: 4.274798e-01	ci left: 8.264451e-04	ci right 1.285977e-03	k: 83	n:80000
Cons ci ratio: 4.228603e-02	ci left: 9.494516e-02	ci right 9.905912e-02	k: 7759	n:80000
KS ci ratio: 5.716192e-01	ci left: 4.210021e-04	ci right 7.668958e-04	k: 46	n:80000
MLL3   80000 perm   43 sec   (1857 perm/sec)   p_kst 5.750000e-04   p_cons 9.698750e-02   p_joint 1.037500e-03

Joint ci ratio: 4.176667e-01	ci left: 7.743306e-04	ci right 1.192245e-03	k: 87	n:90000
Cons ci ratio: 3.978446e-02	ci left: 9.542628e-02	ci right 9.931082e-02	k: 8762	n:90000
KS ci ratio: 5.332814e-01	ci left: 4.411483e-04	ci right 7.702113e-04	k: 53	n:90000
MLL3   90000 perm   49 sec   (1849 perm/sec)   p_kst 5.888889e-04   p_cons 9.735556e-02   p_joint 9.666667e-04

Joint ci ratio: 4.130162e-01	ci left: 7.148022e-04	ci right 1.095109e-03	k: 89	n:100000
Cons ci ratio: 3.786939e-02	ci left: 9.494432e-02	ci right 9.861910e-02	k: 9677	n:100000
KS ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
MLL3   100000 perm   54 sec   (1842 perm/sec)   p_kst 5.400000e-04   p_cons 9.677000e-02   p_joint 8.900000e-04

Joint ci ratio: 4.085155e-01	ci left: 6.661191e-04	ci right 1.015612e-03	k: 91	n:110000
Cons ci ratio: 3.611608e-02	ci left: 9.498660e-02	ci right 9.848924e-02	k: 10640	n:110000
KS ci ratio: 5.190798e-01	ci left: 3.845840e-04	ci right 6.610466e-04	k: 56	n:110000
MLL3   110000 perm   60 sec   (1834 perm/sec)   p_kst 5.090909e-04   p_cons 9.672727e-02   p_joint 8.272727e-04

Joint ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
Cons ci ratio: 3.450512e-02	ci left: 9.543031e-02	ci right 9.878919e-02	k: 11652	n:120000
KS ci ratio: 4.860824e-01	ci left: 4.107551e-04	ci right 6.810045e-04	k: 64	n:120000
MLL3   120000 perm   66 sec   (1824 perm/sec)   p_kst 5.333333e-04   p_cons 9.710000e-02   p_joint 8.583333e-04

Joint ci ratio: 3.788033e-01	ci left: 6.676169e-04	ci right 9.861000e-04	k: 106	n:130000
Cons ci ratio: 3.314286e-02	ci left: 9.554141e-02	ci right 9.876889e-02	k: 12629	n:130000
KS ci ratio: 4.717855e-01	ci left: 4.062119e-04	ci right 6.630782e-04	k: 68	n:130000
MLL3   130000 perm   72 sec   (1813 perm/sec)   p_kst 5.230769e-04   p_cons 9.714615e-02   p_joint 8.153846e-04

Joint ci ratio: 3.736091e-01	ci left: 6.393304e-04	ci right 9.391134e-04	k: 109	n:140000
Cons ci ratio: 3.193926e-02	ci left: 9.558924e-02	ci right 9.869890e-02	k: 13599	n:140000
KS ci ratio: 4.555687e-01	ci left: 4.087383e-04	ci right 6.555742e-04	k: 73	n:140000
MLL3   140000 perm   78 sec   (1805 perm/sec)   p_kst 5.214286e-04   p_cons 9.713571e-02   p_joint 7.785714e-04

Joint ci ratio: 3.880046e-01	ci left: 5.484735e-04	ci right 8.181018e-04	k: 101	n:150000
Cons ci ratio: 3.088025e-02	ci left: 9.550674e-02	ci right 9.850886e-02	k: 14550	n:150000
KS ci ratio: 4.381510e-01	ci left: 4.169884e-04	ci right 6.563412e-04	k: 79	n:150000
MLL3   150000 perm   84 sec   (1796 perm/sec)   p_kst 5.266667e-04   p_cons 9.700000e-02   p_joint 6.733333e-04

Joint ci ratio: 3.999620e-01	ci left: 4.804049e-04	ci right 7.257806e-04	k: 95	n:160000
Cons ci ratio: 2.989761e-02	ci left: 9.556644e-02	ci right 9.847319e-02	k: 15522	n:160000
KS ci ratio: 4.201525e-01	ci left: 4.299524e-04	ci right 6.637662e-04	k: 86	n:160000
MLL3   160000 perm   90 sec   (1787 perm/sec)   p_kst 5.375000e-04   p_cons 9.701250e-02   p_joint 5.937500e-04

Joint ci ratio: 3.918835e-01	ci left: 4.733322e-04	ci right 7.089489e-04	k: 99	n:170000
Cons ci ratio: 2.902268e-02	ci left: 9.550356e-02	ci right 9.832196e-02	k: 16474	n:170000
KS ci ratio: 4.130937e-01	ci left: 4.204575e-04	ci right 6.442091e-04	k: 89	n:170000
MLL3   170000 perm   96 sec   (1777 perm/sec)   p_kst 5.235294e-04   p_cons 9.690588e-02   p_joint 5.823529e-04

Joint ci ratio: 4.108226e-01	ci left: 4.020776e-04	ci right 6.145497e-04	k: 90	n:180000
Cons ci ratio: 2.816755e-02	ci left: 9.577450e-02	ci right 9.851626e-02	k: 17485	n:180000
KS ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
MLL3   180000 perm   102 sec   (1767 perm/sec)   p_kst 5.166667e-04   p_cons 9.713889e-02   p_joint 5.000000e-04

Joint ci ratio: 4.020819e-01	ci left: 3.998157e-04	ci right 6.053991e-04	k: 94	n:190000
Cons ci ratio: 2.737969e-02	ci left: 9.604415e-02	ci right 9.871551e-02	k: 18501	n:190000
KS ci ratio: 3.938711e-01	ci left: 4.187620e-04	ci right 6.285467e-04	k: 98	n:190000
MLL3   190000 perm   108 sec   (1758 perm/sec)   p_kst 5.157895e-04   p_cons 9.737368e-02   p_joint 4.947368e-04

Joint ci ratio: 3.999863e-01	ci left: 3.843198e-04	ci right 5.806322e-04	k: 95	n:200000
Cons ci ratio: 2.671211e-02	ci left: 9.591005e-02	ci right 9.851163e-02	k: 19441	n:200000
KS ci ratio: 3.919010e-01	ci left: 4.023292e-04	ci right 6.026123e-04	k: 99	n:200000
MLL3   200000 perm   114 sec   (1747 perm/sec)   p_kst 4.950000e-04   p_cons 9.720500e-02   p_joint 4.750000e-04

Joint ci ratio: 3.979228e-01	ci left: 3.703024e-04	ci right 5.582214e-04	k: 96	n:210000
Cons ci ratio: 2.609888e-02	ci left: 9.573738e-02	ci right 9.827376e-02	k: 20370	n:210000
KS ci ratio: 3.719707e-01	ci left: 4.305268e-04	ci right 6.312982e-04	k: 110	n:210000
MLL3   210000 perm   121 sec   (1737 perm/sec)   p_kst 5.238095e-04   p_cons 9.700000e-02   p_joint 4.571429e-04

Joint ci ratio: 3.979270e-01	ci left: 3.534698e-04	ci right 5.328490e-04	k: 96	n:220000
Cons ci ratio: 2.554594e-02	ci left: 9.544545e-02	ci right 9.791973e-02	k: 21269	n:220000
KS ci ratio: 3.654455e-01	ci left: 4.274545e-04	ci right 6.224622e-04	k: 114	n:220000
MLL3   220000 perm   128 sec   (1725 perm/sec)   p_kst 5.181818e-04   p_cons 9.667727e-02   p_joint 4.363636e-04

Joint ci ratio: 3.806555e-01	ci left: 3.734043e-04	ci right 5.526208e-04	k: 105	n:230000
Cons ci ratio: 2.497934e-02	ci left: 9.550803e-02	ci right 9.792823e-02	k: 22244	n:230000
KS ci ratio: 3.592521e-01	ci left: 4.246775e-04	ci right 6.143668e-04	k: 118	n:230000
MLL3   230000 perm   134 sec   (1713 perm/sec)   p_kst 5.130435e-04   p_cons 9.671304e-02   p_joint 4.565217e-04

Joint ci ratio: 4.021031e-01	ci left: 3.165178e-04	ci right 4.792798e-04	k: 94	n:240000
Cons ci ratio: 2.444476e-02	ci left: 9.559496e-02	ci right 9.796479e-02	k: 23226	n:240000
KS ci ratio: 3.562731e-01	ci left: 4.145665e-04	ci right 5.978482e-04	k: 120	n:240000
MLL3   240000 perm   141 sec   (1702 perm/sec)   p_kst 5.000000e-04   p_cons 9.677500e-02   p_joint 3.916667e-04

Joint ci ratio: 3.919208e-01	ci left: 3.218605e-04	ci right 4.820950e-04	k: 99	n:250000
Cons ci ratio: 2.392013e-02	ci left: 9.584254e-02	ci right 9.816681e-02	k: 24250	n:250000
KS ci ratio: 3.519384e-01	ci left: 4.089163e-04	ci right 5.869978e-04	k: 123	n:250000
MLL3   250000 perm   148 sec   (1692 perm/sec)   p_kst 4.920000e-04   p_cons 9.700000e-02   p_joint 3.960000e-04

Joint ci ratio: 3.806657e-01	ci left: 3.303177e-04	ci right 4.888596e-04	k: 105	n:260000
Cons ci ratio: 2.346182e-02	ci left: 9.581906e-02	ci right 9.809763e-02	k: 25208	n:260000
KS ci ratio: 3.463964e-01	ci left: 4.072241e-04	ci right 5.811496e-04	k: 127	n:260000
MLL3   260000 perm   155 sec   (1683 perm/sec)   p_kst 4.884615e-04   p_cons 9.695385e-02   p_joint 4.038462e-04

Joint ci ratio: 3.899809e-01	ci left: 3.013580e-04	ci right 4.504516e-04	k: 100	n:270000
Cons ci ratio: 2.301136e-02	ci left: 9.593035e-02	ci right 9.816719e-02	k: 26202	n:270000
KS ci ratio: 3.385518e-01	ci left: 4.124533e-04	ci right 5.837513e-04	k: 133	n:270000
MLL3   270000 perm   161 sec   (1673 perm/sec)   p_kst 4.925926e-04   p_cons 9.704444e-02   p_joint 3.703704e-04

Joint ci ratio: 3.788876e-01	ci left: 3.099534e-04	ci right 4.578531e-04	k: 106	n:280000
Cons ci ratio: 2.259647e-02	ci left: 9.595236e-02	ci right 9.814885e-02	k: 27173	n:280000
KS ci ratio: 3.300398e-01	ci left: 4.206251e-04	ci right 5.899930e-04	k: 140	n:280000
MLL3   280000 perm   168 sec   (1663 perm/sec)   p_kst 5.000000e-04   p_cons 9.704643e-02   p_joint 3.785714e-04

Joint ci ratio: 3.843180e-01	ci left: 2.899122e-04	ci right 4.307336e-04	k: 103	n:290000
Cons ci ratio: 2.221110e-02	ci left: 9.591143e-02	ci right 9.806905e-02	k: 28126	n:290000
KS ci ratio: 3.254563e-01	ci left: 4.187791e-04	ci right 5.845726e-04	k: 144	n:290000
MLL3   290000 perm   175 sec   (1653 perm/sec)   p_kst 4.965517e-04   p_cons 9.698621e-02   p_joint 3.551724e-04

Joint ci ratio: 2.556120e-01	ci left: 6.832866e-04	ci right 8.865572e-04	k: 234	n:300000
Cons ci ratio: 2.184980e-02	ci left: 9.583371e-02	ci right 9.795408e-02	k: 29067	n:300000
KS ci ratio: 3.210586e-01	ci left: 4.170713e-04	ci right 5.794985e-04	k: 148	n:300000
MLL3   300000 perm   182 sec   (1644 perm/sec)   p_kst 4.933333e-04   p_cons 9.689000e-02   p_joint 7.800000e-04

Joint ci ratio: 2.550727e-01	ci left: 6.642636e-04	ci right 8.613917e-04	k: 235	n:310000
Cons ci ratio: 2.148022e-02	ci left: 9.596675e-02	ci right 9.805370e-02	k: 30072	n:310000
KS ci ratio: 3.178755e-01	ci left: 4.125187e-04	ci right 5.712561e-04	k: 151	n:310000
MLL3   310000 perm   190 sec   (1635 perm/sec)   p_kst 4.870968e-04   p_cons 9.700645e-02   p_joint 7.580645e-04

Joint ci ratio: 2.624107e-01	ci left: 6.055119e-04	ci right 7.912234e-04	k: 222	n:320000
Cons ci ratio: 2.114536e-02	ci left: 9.595490e-02	ci right 9.800866e-02	k: 31033	n:320000
KS ci ratio: 3.137742e-01	ci left: 4.111368e-04	ci right 5.668919e-04	k: 155	n:320000
MLL3   320000 perm   197 sec   (1626 perm/sec)   p_kst 4.843750e-04   p_cons 9.697812e-02   p_joint 6.937500e-04

Joint ci ratio: 2.589506e-01	ci left: 6.041569e-04	ci right 7.866143e-04	k: 228	n:330000
Cons ci ratio: 2.081776e-02	ci left: 9.601036e-02	ci right 9.803309e-02	k: 32016	n:330000
KS ci ratio: 3.098276e-01	ci left: 4.098509e-04	ci right 5.627801e-04	k: 159	n:330000
MLL3   330000 perm   204 sec   (1617 perm/sec)   p_kst 4.818182e-04   p_cons 9.701818e-02   p_joint 6.909091e-04

Joint ci ratio: 2.583893e-01	ci left: 5.891374e-04	ci right 7.666109e-04	k: 229	n:340000
Cons ci ratio: 2.051319e-02	ci left: 9.599252e-02	ci right 9.798494e-02	k: 32975	n:340000
KS ci ratio: 3.098298e-01	ci left: 3.977961e-04	ci right 5.462284e-04	k: 159	n:340000
MLL3   340000 perm   211 sec   (1608 perm/sec)   p_kst 4.676471e-04   p_cons 9.698529e-02   p_joint 6.735294e-04

Joint ci ratio: 2.572749e-01	ci left: 5.776495e-04	ci right 7.507912e-04	k: 231	n:350000
Cons ci ratio: 2.022855e-02	ci left: 9.591618e-02	ci right 9.787907e-02	k: 33913	n:350000
KS ci ratio: 3.088678e-01	ci left: 3.890656e-04	ci right 5.337006e-04	k: 160	n:350000
MLL3   350000 perm   219 sec   (1599 perm/sec)   p_kst 4.571429e-04   p_cons 9.689429e-02   p_joint 6.600000e-04

Joint ci ratio: 2.717242e-01	ci left: 4.993510e-04	ci right 6.588666e-04	k: 207	n:360000
Cons ci ratio: 1.994782e-02	ci left: 9.591064e-02	ci right 9.784586e-02	k: 34875	n:360000
KS ci ratio: 3.014673e-01	ci left: 3.987795e-04	ci right 5.427934e-04	k: 168	n:360000
MLL3   360000 perm   226 sec   (1590 perm/sec)   p_kst 4.666667e-04   p_cons 9.687500e-02   p_joint 5.750000e-04

Joint ci ratio: 2.717263e-01	ci left: 4.858545e-04	ci right 6.410601e-04	k: 207	n:370000
Cons ci ratio: 1.967148e-02	ci left: 9.596746e-02	ci right 9.787670e-02	k: 35860	n:370000
KS ci ratio: 2.954104e-01	ci left: 4.055047e-04	ci right 5.484541e-04	k: 175	n:370000
MLL3   370000 perm   234 sec   (1581 perm/sec)   p_kst 4.729730e-04   p_cons 9.691892e-02   p_joint 5.594595e-04

Joint ci ratio: 2.691512e-01	ci left: 4.828814e-04	ci right 6.354286e-04	k: 211	n:380000
Cons ci ratio: 1.941011e-02	ci left: 9.598740e-02	ci right 9.787138e-02	k: 36832	n:380000
KS ci ratio: 2.897046e-01	ci left: 4.119031e-04	ci right 5.537898e-04	k: 182	n:380000
MLL3   380000 perm   242 sec   (1572 perm/sec)   p_kst 4.789474e-04   p_cons 9.692632e-02   p_joint 5.552632e-04

Joint ci ratio: 2.785112e-01	ci left: 4.370647e-04	ci right 5.807825e-04	k: 197	n:390000
Cons ci ratio: 1.914207e-02	ci left: 9.615967e-02	ci right 9.802068e-02	k: 37864	n:390000
KS ci ratio: 2.850686e-01	ci left: 4.156175e-04	ci right 5.560803e-04	k: 188	n:390000
MLL3   390000 perm   249 sec   (1563 perm/sec)   p_kst 4.820513e-04   p_cons 9.708718e-02   p_joint 5.051282e-04

Joint ci ratio: 2.792193e-01	ci left: 4.238124e-04	ci right 5.635892e-04	k: 196	n:400000
Cons ci ratio: 1.887946e-02	ci left: 9.637328e-02	ci right 9.821256e-02	k: 38916	n:400000
KS ci ratio: 2.813710e-01	ci left: 4.168394e-04	ci right 5.555637e-04	k: 193	n:400000
MLL3   400000 perm   257 sec   (1554 perm/sec)   p_kst 4.825000e-04   p_cons 9.729000e-02   p_joint 4.900000e-04

Joint ci ratio: 2.642151e-01	ci left: 4.657559e-04	ci right 6.097482e-04	k: 219	n:410000
Cons ci ratio: 1.866255e-02	ci left: 9.624631e-02	ci right 9.806183e-02	k: 39832	n:410000
KS ci ratio: 2.843204e-01	ci left: 3.976078e-04	ci right 5.315680e-04	k: 189	n:410000
MLL3   410000 perm   265 sec   (1546 perm/sec)   p_kst 4.609756e-04   p_cons 9.715122e-02   p_joint 5.341463e-04

Joint ci ratio: 2.601089e-01	ci left: 4.702382e-04	ci right 6.129896e-04	k: 226	n:420000
Cons ci ratio: 1.843667e-02	ci left: 9.627962e-02	ci right 9.807356e-02	k: 40813	n:420000
KS ci ratio: 2.828366e-01	ci left: 3.925641e-04	ci right 5.240115e-04	k: 191	n:420000
MLL3   420000 perm   273 sec   (1537 perm/sec)   p_kst 4.547619e-04   p_cons 9.717381e-02   p_joint 5.380952e-04

Joint ci ratio: 2.572909e-01	ci left: 4.701764e-04	ci right 6.111143e-04	k: 231	n:430000
Cons ci ratio: 1.822436e-02	ci left: 9.625824e-02	ci right 9.803091e-02	k: 41771	n:430000
KS ci ratio: 2.757451e-01	ci left: 4.050625e-04	ci right 5.367048e-04	k: 201	n:430000
MLL3   430000 perm   281 sec   (1528 perm/sec)   p_kst 4.674419e-04   p_cons 9.714186e-02   p_joint 5.372093e-04

Joint ci ratio: 2.540268e-01	ci left: 4.722532e-04	ci right 6.117335e-04	k: 237	n:440000
Cons ci ratio: 1.800871e-02	ci left: 9.633981e-02	ci right 9.809277e-02	k: 42774	n:440000
KS ci ratio: 2.723944e-01	ci left: 4.064394e-04	ci right 5.366495e-04	k: 206	n:440000
MLL3   440000 perm   290 sec   (1520 perm/sec)   p_kst 4.681818e-04   p_cons 9.721364e-02   p_joint 5.386364e-04

Joint ci ratio: 2.513999e-01	ci left: 4.721662e-04	ci right 6.099528e-04	k: 242	n:450000
Cons ci ratio: 1.781452e-02	ci left: 9.628064e-02	ci right 9.801344e-02	k: 43715	n:450000
KS ci ratio: 2.685301e-01	ci left: 4.098368e-04	ci right 5.389590e-04	k: 212	n:450000
MLL3   450000 perm   298 sec   (1511 perm/sec)   p_kst 4.711111e-04   p_cons 9.714444e-02   p_joint 5.377778e-04

Joint ci ratio: 2.524430e-01	ci left: 4.578279e-04	ci right 5.920718e-04	k: 240	n:460000
Cons ci ratio: 1.762254e-02	ci left: 9.626312e-02	ci right 9.797674e-02	k: 44674	n:460000
KS ci ratio: 2.654327e-01	ci left: 4.110695e-04	ci right 5.388378e-04	k: 217	n:460000
MLL3   460000 perm   306 sec   (1503 perm/sec)   p_kst 4.717391e-04   p_cons 9.711739e-02   p_joint 5.217391e-04

Joint ci ratio: 2.691657e-01	ci left: 3.904122e-04	ci right 5.137547e-04	k: 211	n:470000
Cons ci ratio: 1.743156e-02	ci left: 9.629731e-02	ci right 9.799277e-02	k: 45657	n:470000
KS ci ratio: 2.618533e-01	ci left: 4.142458e-04	ci right 5.409808e-04	k: 223	n:470000
MLL3   470000 perm   314 sec   (1495 perm/sec)   p_kst 4.744681e-04   p_cons 9.714255e-02   p_joint 4.489362e-04

Joint ci ratio: 2.666619e-01	ci left: 3.900522e-04	ci right 5.119432e-04	k: 215	n:480000
Cons ci ratio: 1.725527e-02	ci left: 9.624300e-02	ci right 9.792020e-02	k: 46598	n:480000
KS ci ratio: 2.589788e-01	ci left: 4.153524e-04	ci right 5.408054e-04	k: 228	n:480000
MLL3   480000 perm   323 sec   (1487 perm/sec)   p_kst 4.750000e-04   p_cons 9.707917e-02   p_joint 4.479167e-04

Joint ci ratio: 2.624426e-01	ci left: 3.954305e-04	ci right 5.167261e-04	k: 222	n:490000
Cons ci ratio: 1.707428e-02	ci left: 9.629265e-02	ci right 9.795294e-02	k: 47589	n:490000
KS ci ratio: 2.551085e-01	ci left: 4.202414e-04	ci right 5.449724e-04	k: 235	n:490000
MLL3   490000 perm   331 sec   (1479 perm/sec)   p_kst 4.795918e-04   p_cons 9.712041e-02   p_joint 4.530612e-04

Joint ci ratio: 2.624438e-01	ci left: 3.875217e-04	ci right 5.063919e-04	k: 222	n:500000
Cons ci ratio: 1.689193e-02	ci left: 9.641212e-02	ci right 9.805655e-02	k: 48616	n:500000
KS ci ratio: 2.551098e-01	ci left: 4.118364e-04	ci right 5.340733e-04	k: 235	n:500000
MLL3   500000 perm   340 sec   (1471 perm/sec)   p_kst 4.700000e-04   p_cons 9.723200e-02   p_joint 4.440000e-04

Joint ci ratio: 2.642291e-01	ci left: 3.744288e-04	ci right 4.901934e-04	k: 219	n:510000
Cons ci ratio: 1.672164e-02	ci left: 9.646058e-02	ci right 9.808909e-02	k: 49609	n:510000
KS ci ratio: 2.540363e-01	ci left: 4.074324e-04	ci right 5.277727e-04	k: 237	n:510000
MLL3   510000 perm   349 sec   (1463 perm/sec)   p_kst 4.647059e-04   p_cons 9.727255e-02   p_joint 4.294118e-04

Joint ci ratio: 2.595512e-01	ci left: 3.816032e-04	ci right 4.971585e-04	k: 227	n:520000
Cons ci ratio: 1.656239e-02	ci left: 9.644404e-02	ci right 9.805661e-02	k: 50569	n:520000
KS ci ratio: 2.498707e-01	ci left: 4.140106e-04	ci right 5.339770e-04	k: 245	n:520000
MLL3   520000 perm   357 sec   (1455 perm/sec)   p_kst 4.711538e-04   p_cons 9.724808e-02   p_joint 4.365385e-04

Joint ci ratio: 2.578606e-01	ci left: 3.796965e-04	ci right 4.938049e-04	k: 230	n:530000
Cons ci ratio: 1.640531e-02	ci left: 9.645262e-02	ci right 9.804990e-02	k: 51542	n:530000
KS ci ratio: 2.473694e-01	ci left: 4.150453e-04	ci right 5.339224e-04	k: 250	n:530000
MLL3   530000 perm   366 sec   (1448 perm/sec)   p_kst 4.716981e-04   p_cons 9.724906e-02   p_joint 4.339623e-04

Joint ci ratio: 2.562027e-01	ci left: 3.778627e-04	ci right 4.905731e-04	k: 233	n:540000
Cons ci ratio: 1.625210e-02	ci left: 9.646649e-02	ci right 9.804894e-02	k: 52518	n:540000
KS ci ratio: 2.449417e-01	ci left: 4.160475e-04	ci right 5.338642e-04	k: 255	n:540000
MLL3   540000 perm   375 sec   (1440 perm/sec)   p_kst 4.722222e-04   p_cons 9.725556e-02   p_joint 4.314815e-04

Joint ci ratio: 2.524538e-01	ci left: 3.829087e-04	ci right 4.951902e-04	k: 240	n:550000
Cons ci ratio: 1.610127e-02	ci left: 9.649986e-02	ci right 9.806802e-02	k: 53505	n:550000
KS ci ratio: 2.421205e-01	ci left: 4.187265e-04	ci right 5.357310e-04	k: 261	n:550000
MLL3   550000 perm   384 sec   (1432 perm/sec)   p_kst 4.745455e-04   p_cons 9.728182e-02   p_joint 4.363636e-04

Joint ci ratio: 2.508974e-01	ci left: 3.810902e-04	ci right 4.920419e-04	k: 243	n:560000
Cons ci ratio: 1.595262e-02	ci left: 9.655345e-02	ci right 9.810787e-02	k: 54504	n:560000
KS ci ratio: 2.407465e-01	ci left: 4.162822e-04	ci right 5.318451e-04	k: 264	n:560000
MLL3   560000 perm   393 sec   (1424 perm/sec)   p_kst 4.714286e-04   p_cons 9.732857e-02   p_joint 4.339286e-04

Joint ci ratio: 2.514143e-01	ci left: 3.727603e-04	ci right 4.815453e-04	k: 242	n:570000
Cons ci ratio: 1.580675e-02	ci left: 9.661920e-02	ci right 9.816033e-02	k: 55511	n:570000
KS ci ratio: 2.393956e-01	ci left: 4.139255e-04	ci right 5.280937e-04	k: 267	n:570000
MLL3   570000 perm   403 sec   (1416 perm/sec)   p_kst 4.684211e-04   p_cons 9.738772e-02   p_joint 4.245614e-04

Joint ci ratio: 2.503865e-01	ci left: 3.695647e-04	ci right 4.769076e-04	k: 244	n:580000
Cons ci ratio: 1.567018e-02	ci left: 9.662262e-02	ci right 9.815037e-02	k: 56483	n:580000
KS ci ratio: 2.363286e-01	ci left: 4.181388e-04	ci right 5.317754e-04	k: 274	n:580000
MLL3   580000 perm   412 sec   (1408 perm/sec)   p_kst 4.724138e-04   p_cons 9.738448e-02   p_joint 4.206897e-04

Joint ci ratio: 2.514161e-01	ci left: 3.601240e-04	ci right 4.652222e-04	k: 242	n:590000
Cons ci ratio: 1.553814e-02	ci left: 9.661416e-02	ci right 9.812878e-02	k: 57448	n:590000
KS ci ratio: 2.333766e-01	ci left: 4.222181e-04	ci right 5.353233e-04	k: 281	n:590000
MLL3   590000 perm   421 sec   (1401 perm/sec)   p_kst 4.762712e-04   p_cons 9.736949e-02   p_joint 4.101695e-04

Joint ci ratio: 2.498786e-01	ci left: 3.588079e-04	ci right 4.627820e-04	k: 245	n:600000
Cons ci ratio: 1.541816e-02	ci left: 9.650637e-02	ci right 9.800752e-02	k: 58353	n:600000
KS ci ratio: 2.313347e-01	ci left: 4.230295e-04	ci right 5.352188e-04	k: 286	n:600000
MLL3   600000 perm   431 sec   (1393 perm/sec)   p_kst 4.766667e-04   p_cons 9.725500e-02   p_joint 4.083333e-04

Joint ci ratio: 2.473771e-01	ci left: 3.606119e-04	ci right 4.639017e-04	k: 250	n:610000
Cons ci ratio: 1.529020e-02	ci left: 9.652470e-02	ci right 9.801356e-02	k: 59333	n:610000
KS ci ratio: 2.281758e-01	ci left: 4.284547e-04	ci right 5.403128e-04	k: 294	n:610000
MLL3   610000 perm   440 sec   (1386 perm/sec)   p_kst 4.819672e-04   p_cons 9.726721e-02   p_joint 4.098361e-04

Joint ci ratio: 2.578688e-01	ci left: 3.245780e-04	ci right 4.221254e-04	k: 230	n:620000
Cons ci ratio: 1.516523e-02	ci left: 9.654409e-02	ci right 9.802097e-02	k: 60314	n:620000
KS ci ratio: 2.266446e-01	ci left: 4.276282e-04	ci right 5.384166e-04	k: 298	n:620000
MLL3   620000 perm   450 sec   (1378 perm/sec)   p_kst 4.806452e-04   p_cons 9.728065e-02   p_joint 3.709677e-04

Joint ci ratio: 2.567600e-01	ci left: 3.223958e-04	ci right 4.188039e-04	k: 232	n:630000
Cons ci ratio: 1.504532e-02	ci left: 9.653918e-02	ci right 9.800421e-02	k: 61280	n:630000
KS ci ratio: 2.262672e-01	ci left: 4.223376e-04	ci right 5.315477e-04	k: 299	n:630000
MLL3   630000 perm   459 sec   (1372 perm/sec)   p_kst 4.746032e-04   p_cons 9.726984e-02   p_joint 3.682540e-04

Joint ci ratio: 2.618700e-01	ci left: 3.042094e-04	ci right 3.972863e-04	k: 223	n:640000
Cons ci ratio: 1.492396e-02	ci left: 9.658430e-02	ci right 9.803809e-02	k: 62278	n:640000
KS ci ratio: 2.247738e-01	ci left: 4.216355e-04	ci right 5.298448e-04	k: 303	n:640000
MLL3   640000 perm   469 sec   (1366 perm/sec)   p_kst 4.734375e-04   p_cons 9.730938e-02   p_joint 3.484375e-04

Joint ci ratio: 2.612879e-01	ci left: 3.009668e-04	ci right 3.928134e-04	k: 224	n:650000
Cons ci ratio: 1.481080e-02	ci left: 9.656522e-02	ci right 9.800761e-02	k: 63235	n:650000
KS ci ratio: 2.233096e-01	ci left: 4.209573e-04	ci right 5.281920e-04	k: 307	n:650000
MLL3   650000 perm   478 sec   (1359 perm/sec)   p_kst 4.723077e-04   p_cons 9.728462e-02   p_joint 3.446154e-04

Joint ci ratio: 2.601346e-01	ci left: 2.992389e-04	ci right 3.900896e-04	k: 226	n:660000
Cons ci ratio: 1.470095e-02	ci left: 9.653769e-02	ci right 9.796888e-02	k: 64186	n:660000
KS ci ratio: 2.208141e-01	ci left: 4.245954e-04	ci right 5.313839e-04	k: 314	n:660000
MLL3   660000 perm   488 sec   (1352 perm/sec)   p_kst 4.757576e-04   p_cons 9.725152e-02   p_joint 3.424242e-04

Joint ci ratio: 2.573159e-01	ci left: 3.017515e-04	ci right 3.922129e-04	k: 231	n:670000
Cons ci ratio: 1.458779e-02	ci left: 9.657945e-02	ci right 9.800015e-02	k: 65183	n:670000
KS ci ratio: 2.187405e-01	ci left: 4.267205e-04	ci right 5.329002e-04	k: 320	n:670000
MLL3   670000 perm   498 sec   (1345 perm/sec)   p_kst 4.776119e-04   p_cons 9.728806e-02   p_joint 3.447761e-04

Joint ci ratio: 2.642434e-01	ci left: 2.808198e-04	ci right 3.676478e-04	k: 219	n:680000
Cons ci ratio: 1.447503e-02	ci left: 9.664642e-02	ci right 9.805702e-02	k: 66198	n:680000
KS ci ratio: 2.177257e-01	ci left: 4.246157e-04	ci right 5.297160e-04	k: 323	n:680000
MLL3   680000 perm   508 sec   (1338 perm/sec)   p_kst 4.750000e-04   p_cons 9.735000e-02   p_joint 3.220588e-04

Joint ci ratio: 2.612905e-01	ci left: 2.835191e-04	ci right 3.700421e-04	k: 224	n:690000
Cons ci ratio: 1.436342e-02	ci left: 9.672881e-02	ci right 9.812964e-02	k: 67225	n:690000
KS ci ratio: 2.150860e-01	ci left: 4.294278e-04	ci right 5.342604e-04	k: 331	n:690000
MLL3   690000 perm   518 sec   (1332 perm/sec)   p_kst 4.797101e-04   p_cons 9.742754e-02   p_joint 3.246377e-04

Joint ci ratio: 2.562154e-01	ci left: 2.914923e-04	ci right 3.784447e-04	k: 233	n:700000
Cons ci ratio: 1.426234e-02	ci left: 9.671064e-02	ci right 9.810127e-02	k: 68183	n:700000
KS ci ratio: 2.122280e-01	ci left: 4.354625e-04	ci right 5.401720e-04	k: 340	n:700000
MLL3   700000 perm   528 sec   (1325 perm/sec)   p_kst 4.857143e-04   p_cons 9.740429e-02   p_joint 3.328571e-04

Joint ci ratio: 2.630519e-01	ci left: 2.715847e-04	ci right 3.551163e-04	k: 221	n:710000
Cons ci ratio: 1.416598e-02	ci left: 9.666072e-02	ci right 9.804116e-02	k: 69118	n:710000
KS ci ratio: 2.103850e-01	ci left: 4.373328e-04	ci right 5.414611e-04	k: 346	n:710000
MLL3   710000 perm   539 sec   (1318 perm/sec)   p_kst 4.873239e-04   p_cons 9.734930e-02   p_joint 3.112676e-04

Joint ci ratio: 2.618751e-01	ci left: 2.704077e-04	ci right 3.531443e-04	k: 223	n:720000
Cons ci ratio: 1.406732e-02	ci left: 9.666483e-02	ci right 9.803564e-02	k: 70091	n:720000
KS ci ratio: 2.091830e-01	ci left: 4.365224e-04	ci right 5.397879e-04	k: 350	n:720000
MLL3   720000 perm   549 sec   (1312 perm/sec)   p_kst 4.861111e-04   p_cons 9.734861e-02   p_joint 3.097222e-04

Joint ci ratio: 2.584362e-01	ci left: 2.743868e-04	ci right 3.570605e-04	k: 229	n:730000
Cons ci ratio: 1.396960e-02	ci left: 9.668251e-02	ci right 9.804397e-02	k: 71074	n:730000
KS ci ratio: 2.074175e-01	ci left: 4.383332e-04	ci right 5.410408e-04	k: 356	n:730000
MLL3   730000 perm   559 sec   (1305 perm/sec)   p_kst 4.876712e-04   p_cons 9.736164e-02   p_joint 3.136986e-04

Joint ci ratio: 1.885459e-01	ci left: 5.287508e-04	ci right 6.400840e-04	k: 431	n:740000
Cons ci ratio: 1.387976e-02	ci left: 9.662566e-02	ci right 9.797750e-02	k: 72002	n:740000
KS ci ratio: 2.059801e-01	ci left: 4.388168e-04	ci right 5.408354e-04	k: 361	n:740000
MLL3   740000 perm   570 sec   (1299 perm/sec)   p_kst 4.878378e-04   p_cons 9.730000e-02   p_joint 5.824324e-04

Joint ci ratio: 1.923719e-01	ci left: 5.001141e-04	ci right 6.078044e-04	k: 414	n:750000
Cons ci ratio: 1.378483e-02	ci left: 9.665675e-02	ci right 9.799970e-02	k: 72995	n:750000
KS ci ratio: 2.054138e-01	ci left: 4.354952e-04	ci right 5.364282e-04	k: 363	n:750000
MLL3   750000 perm   580 sec   (1292 perm/sec)   p_kst 4.840000e-04   p_cons 9.732667e-02   p_joint 5.520000e-04

Joint ci ratio: 1.926049e-01	ci left: 4.922810e-04	ci right 5.984282e-04	k: 413	n:760000
Cons ci ratio: 1.369304e-02	ci left: 9.667131e-02	ci right 9.800545e-02	k: 73976	n:760000
KS ci ratio: 2.031927e-01	ci left: 4.397529e-04	ci right 5.404339e-04	k: 371	n:760000
MLL3   760000 perm   591 sec   (1286 perm/sec)   p_kst 4.881579e-04   p_cons 9.733684e-02   p_joint 5.434211e-04

Joint ci ratio: 1.923732e-01	ci left: 4.871238e-04	ci right 5.920177e-04	k: 414	n:770000
Cons ci ratio: 1.360297e-02	ci left: 9.668681e-02	ci right 9.801232e-02	k: 74958	n:770000
KS ci ratio: 2.023785e-01	ci left: 4.377400e-04	ci right 5.375090e-04	k: 374	n:770000
MLL3   770000 perm   602 sec   (1280 perm/sec)   p_kst 4.857143e-04   p_cons 9.734805e-02   p_joint 5.376623e-04

Joint ci ratio: 1.905451e-01	ci left: 4.906435e-04	ci right 5.951751e-04	k: 422	n:780000
Cons ci ratio: 1.351811e-02	ci left: 9.665721e-02	ci right 9.797398e-02	k: 75905	n:780000
KS ci ratio: 2.010426e-01	ci left: 4.382145e-04	ci right 5.373514e-04	k: 379	n:780000
MLL3   780000 perm   612 sec   (1273 perm/sec)   p_kst 4.858974e-04   p_cons 9.731410e-02   p_joint 5.410256e-04

Joint ci ratio: 1.928400e-01	ci left: 4.723816e-04	ci right 5.743768e-04	k: 412	n:790000
Cons ci ratio: 1.343113e-02	ci left: 9.667635e-02	ci right 9.798484e-02	k: 76890	n:790000
KS ci ratio: 1.992159e-01	ci left: 4.410843e-04	ci right 5.398536e-04	k: 386	n:790000
MLL3   790000 perm   623 sec   (1267 perm/sec)   p_kst 4.886076e-04   p_cons 9.732911e-02   p_joint 5.215190e-04

Joint ci ratio: 1.919131e-01	ci left: 4.712360e-04	ci right 5.724377e-04	k: 416	n:800000
Cons ci ratio: 1.334856e-02	ci left: 9.665888e-02	ci right 9.795903e-02	k: 77846	n:800000
KS ci ratio: 1.971878e-01	ci left: 4.450746e-04	ci right 5.436009e-04	k: 394	n:800000
MLL3   800000 perm   634 sec   (1261 perm/sec)   p_kst 4.925000e-04   p_cons 9.730750e-02   p_joint 5.200000e-04

Joint ci ratio: 1.914549e-01	ci left: 4.677688e-04	ci right 5.679582e-04	k: 418	n:810000
Cons ci ratio: 1.326573e-02	ci left: 9.666526e-02	ci right 9.795737e-02	k: 78821	n:810000
KS ci ratio: 1.966908e-01	ci left: 4.419272e-04	ci right 5.394806e-04	k: 396	n:810000
MLL3   810000 perm   645 sec   (1255 perm/sec)   p_kst 4.888889e-04   p_cons 9.730988e-02   p_joint 5.160494e-04

Joint ci ratio: 1.905476e-01	ci left: 4.667091e-04	ci right 5.661429e-04	k: 422	n:820000
Cons ci ratio: 1.318168e-02	ci left: 9.670799e-02	ci right 9.799242e-02	k: 79826	n:820000
KS ci ratio: 1.961976e-01	ci left: 4.388568e-04	ci right 5.354605e-04	k: 398	n:820000
MLL3   820000 perm   656 sec   (1249 perm/sec)   p_kst 4.853659e-04   p_cons 9.734878e-02   p_joint 5.146341e-04

Joint ci ratio: 1.928425e-01	ci left: 4.496157e-04	ci right 5.466967e-04	k: 412	n:830000
Cons ci ratio: 1.309355e-02	ci left: 9.682539e-02	ci right 9.810272e-02	k: 80894	n:830000
KS ci ratio: 1.954644e-01	ci left: 4.370066e-04	ci right 5.328007e-04	k: 401	n:830000
MLL3   830000 perm   668 sec   (1243 perm/sec)   p_kst 4.831325e-04   p_cons 9.746265e-02   p_joint 4.963855e-04

Joint ci ratio: 1.940217e-01	ci left: 4.385988e-04	ci right 5.339485e-04	k: 407	n:840000
Cons ci ratio: 1.301552e-02	ci left: 9.682726e-02	ci right 9.809694e-02	k: 81867	n:840000
KS ci ratio: 1.940217e-01	ci left: 4.385988e-04	ci right 5.339485e-04	k: 407	n:840000
MLL3   840000 perm   679 sec   (1237 perm/sec)   p_kst 4.845238e-04   p_cons 9.746071e-02   p_joint 4.845238e-04

Joint ci ratio: 1.944998e-01	ci left: 4.312001e-04	ci right 5.251997e-04	k: 405	n:850000
Cons ci ratio: 1.293939e-02	ci left: 9.682207e-02	ci right 9.808420e-02	k: 82834	n:850000
KS ci ratio: 1.935482e-01	ci left: 4.356775e-04	ci right 5.301338e-04	k: 409	n:850000
MLL3   850000 perm   690 sec   (1231 perm/sec)   p_kst 4.811765e-04   p_cons 9.745176e-02   p_joint 4.764706e-04

Joint ci ratio: 1.952232e-01	ci left: 4.228678e-04	ci right 5.154346e-04	k: 402	n:860000
Cons ci ratio: 1.286127e-02	ci left: 9.686224e-02	ci right 9.811721e-02	k: 83840	n:860000
KS ci ratio: 1.921472e-01	ci left: 4.372514e-04	ci right 5.312826e-04	k: 415	n:860000
MLL3   860000 perm   701 sec   (1226 perm/sec)   p_kst 4.825581e-04   p_cons 9.748837e-02   p_joint 4.674419e-04

Joint ci ratio: 1.937858e-01	ci left: 4.245680e-04	ci right 5.167420e-04	k: 408	n:870000
Cons ci ratio: 1.278446e-02	ci left: 9.690266e-02	ci right 9.815060e-02	k: 84847	n:870000
KS ci ratio: 1.912301e-01	ci left: 4.366026e-04	ci right 5.299940e-04	k: 419	n:870000
MLL3   870000 perm   712 sec   (1221 perm/sec)   p_kst 4.816092e-04   p_cons 9.752529e-02   p_joint 4.689655e-04

Joint ci ratio: 1.928452e-01	ci left: 4.240688e-04	ci right 5.156352e-04	k: 412	n:880000
Cons ci ratio: 1.271139e-02	ci left: 9.690931e-02	ci right 9.815016e-02	k: 85825	n:880000
KS ci ratio: 1.896560e-01	ci left: 4.392166e-04	ci right 5.323046e-04	k: 426	n:880000
MLL3   880000 perm   724 sec   (1216 perm/sec)   p_kst 4.840909e-04   p_cons 9.752841e-02   p_joint 4.681818e-04

Joint ci ratio: 1.926126e-01	ci left: 4.203733e-04	ci right 5.110194e-04	k: 413	n:890000
Cons ci ratio: 1.263504e-02	ci left: 9.697858e-02	ci right 9.821280e-02	k: 86859	n:890000
KS ci ratio: 1.887739e-01	ci left: 4.385630e-04	ci right 5.310307e-04	k: 430	n:890000
MLL3   890000 perm   735 sec   (1211 perm/sec)   p_kst 4.831461e-04   p_cons 9.759438e-02   p_joint 4.640449e-04

Joint ci ratio: 1.933151e-01	ci left: 4.125300e-04	ci right 5.018474e-04	k: 410	n:900000
Cons ci ratio: 1.256694e-02	ci left: 9.694994e-02	ci right 9.817710e-02	k: 87806	n:900000
KS ci ratio: 1.881205e-01	ci left: 4.368661e-04	ci right 5.286208e-04	k: 433	n:900000
MLL3   900000 perm   747 sec   (1205 perm/sec)   p_kst 4.811111e-04   p_cons 9.756222e-02   p_joint 4.555556e-04

Joint ci ratio: 1.914603e-01	ci left: 4.163646e-04	ci right 5.055466e-04	k: 418	n:910000
Cons ci ratio: 1.249994e-02	ci left: 9.692194e-02	ci right 9.814216e-02	k: 88753	n:910000
KS ci ratio: 1.859895e-01	ci left: 4.425400e-04	ci right 5.343146e-04	k: 443	n:910000
MLL3   910000 perm   758 sec   (1200 perm/sec)   p_kst 4.868132e-04   p_cons 9.753077e-02   p_joint 4.593407e-04

Joint ci ratio: 1.901039e-01	ci left: 4.180492e-04	ci right 5.068844e-04	k: 424	n:920000
Cons ci ratio: 1.243046e-02	ci left: 9.694444e-02	ci right 9.815810e-02	k: 89746	n:920000
KS ci ratio: 1.845402e-01	ci left: 4.449857e-04	ci right 5.364679e-04	k: 450	n:920000
MLL3   920000 perm   770 sec   (1195 perm/sec)   p_kst 4.891304e-04   p_cons 9.755000e-02   p_joint 4.608696e-04

Joint ci ratio: 1.894366e-01	ci left: 4.166265e-04	ci right 5.048129e-04	k: 427	n:930000
Cons ci ratio: 1.236349e-02	ci left: 9.694716e-02	ci right 9.815427e-02	k: 90721	n:930000
KS ci ratio: 1.839297e-01	ci left: 4.432779e-04	ci right 5.340739e-04	k: 453	n:930000
MLL3   930000 perm   782 sec   (1189 perm/sec)   p_kst 4.870968e-04   p_cons 9.754946e-02   p_joint 4.591398e-04

Joint ci ratio: 1.926150e-01	ci left: 3.980126e-04	ci right 4.838381e-04	k: 413	n:940000
Cons ci ratio: 1.229476e-02	ci left: 9.699016e-02	ci right 9.819105e-02	k: 91734	n:940000
KS ci ratio: 1.833252e-01	ci left: 4.416069e-04	ci right 5.317304e-04	k: 456	n:940000
MLL3   940000 perm   794 sec   (1184 perm/sec)   p_kst 4.851064e-04   p_cons 9.758936e-02   p_joint 4.393617e-04

Joint ci ratio: 1.974457e-01	ci left: 3.737977e-04	ci right 4.566665e-04	k: 393	n:950000
Cons ci ratio: 1.223032e-02	ci left: 9.698713e-02	ci right 9.818164e-02	k: 92704	n:950000
KS ci ratio: 1.825282e-01	ci left: 4.409761e-04	ci right 5.305363e-04	k: 460	n:950000
MLL3   950000 perm   806 sec   (1179 perm/sec)   p_kst 4.842105e-04   p_cons 9.758316e-02   p_joint 4.136842e-04

Joint ci ratio: 2.057076e-01	ci left: 3.392408e-04	ci right 4.179917e-04	k: 362	n:960000
Cons ci ratio: 1.216845e-02	ci left: 9.696133e-02	ci right 9.814944e-02	k: 93652	n:960000
KS ci ratio: 1.815463e-01	ci left: 4.413536e-04	ci right 5.304553e-04	k: 465	n:960000
MLL3   960000 perm   818 sec   (1173 perm/sec)   p_kst 4.843750e-04   p_cons 9.755417e-02   p_joint 3.770833e-04

Joint ci ratio: 2.037521e-01	ci left: 3.425901e-04	ci right 4.212684e-04	k: 369	n:970000
Cons ci ratio: 1.210844e-02	ci left: 9.692270e-02	ci right 9.810444e-02	k: 94587	n:970000
KS ci ratio: 1.800075e-01	ci left: 4.446779e-04	ci right 5.336069e-04	k: 473	n:970000
MLL3   970000 perm   830 sec   (1168 perm/sec)   p_kst 4.876289e-04   p_cons 9.751237e-02   p_joint 3.804124e-04

Joint ci ratio: 2.029312e-01	ci left: 3.419996e-04	ci right 4.201866e-04	k: 372	n:980000
Cons ci ratio: 1.204903e-02	ci left: 9.688895e-02	ci right 9.806445e-02	k: 95526	n:980000
KS ci ratio: 1.794407e-01	ci left: 4.430638e-04	ci right 5.313607e-04	k: 476	n:980000
MLL3   980000 perm   843 sec   (1163 perm/sec)   p_kst 4.857143e-04   p_cons 9.747551e-02   p_joint 3.795918e-04

Joint ci ratio: 2.032042e-01	ci left: 3.375862e-04	ci right 4.148810e-04	k: 371	n:990000
Cons ci ratio: 1.198656e-02	ci left: 9.691332e-02	ci right 9.808297e-02	k: 96522	n:990000
KS ci ratio: 1.790659e-01	ci left: 4.405180e-04	ci right 5.281043e-04	k: 478	n:990000
MLL3   990000 perm   855 sec   (1158 perm/sec)   p_kst 4.828283e-04   p_cons 9.749697e-02   p_joint 3.747475e-04

Joint ci ratio: 2.026604e-01	ci left: 3.361087e-04	ci right 4.128338e-04	k: 373	n:1000000
Cons ci ratio: 1.192654e-02	ci left: 9.691528e-02	ci right 9.807905e-02	k: 97496	n:1000000
KS ci ratio: 1.786935e-01	ci left: 4.380232e-04	ci right 5.249127e-04	k: 480	n:1000000
MLL3   1000000 perm   867 sec   (1153 perm/sec)   p_kst 4.800000e-04   p_cons 9.749600e-02   p_joint 3.730000e-04

Joint ci ratio: 2.005266e-01	ci left: 3.403020e-04	ci right 4.170663e-04	k: 381	n:1010000
Cons ci ratio: 1.186388e-02	ci left: 9.696955e-02	ci right 9.812781e-02	k: 98523	n:1010000
KS ci ratio: 1.785084e-01	ci left: 4.346321e-04	ci right 5.207500e-04	k: 481	n:1010000
MLL3   1010000 perm   880 sec   (1148 perm/sec)   p_kst 4.762376e-04   p_cons 9.754752e-02   p_joint 3.772277e-04

Joint ci ratio: 2.000039e-01	ci left: 3.388281e-04	ci right 4.150364e-04	k: 383	n:1020000
Cons ci ratio: 1.180568e-02	ci left: 9.697094e-02	ci right 9.812350e-02	k: 99497	n:1020000
KS ci ratio: 1.781395e-01	ci left: 4.322442e-04	ci right 5.176929e-04	k: 483	n:1020000
MLL3   1020000 perm   892 sec   (1143 perm/sec)   p_kst 4.735294e-04   p_cons 9.754608e-02   p_joint 3.754902e-04

Joint ci ratio: 1.992273e-01	ci left: 3.383056e-04	ci right 4.140649e-04	k: 386	n:1030000
Cons ci ratio: 1.174910e-02	ci left: 9.696070e-02	ci right 9.810758e-02	k: 100459	n:1030000
KS ci ratio: 1.777728e-01	ci left: 4.299029e-04	ci right 5.146950e-04	k: 485	n:1030000
MLL3   1030000 perm   905 sec   (1138 perm/sec)   p_kst 4.708738e-04   p_cons 9.753301e-02   p_joint 3.747573e-04

Joint ci ratio: 2.000046e-01	ci left: 3.323121e-04	ci right 4.070551e-04	k: 383	n:1040000
Cons ci ratio: 1.169474e-02	ci left: 9.692957e-02	ci right 9.807075e-02	k: 101399	n:1040000
KS ci ratio: 1.772268e-01	ci left: 4.285256e-04	ci right 5.127586e-04	k: 488	n:1040000
MLL3   1040000 perm   917 sec   (1134 perm/sec)   p_kst 4.692308e-04   p_cons 9.749904e-02   p_joint 3.682692e-04

Joint ci ratio: 1.989710e-01	ci left: 3.327665e-04	ci right 4.071779e-04	k: 387	n:1050000
Cons ci ratio: 1.163615e-02	ci left: 9.697409e-02	ci right 9.811003e-02	k: 102418	n:1050000
KS ci ratio: 1.766858e-01	ci left: 4.271750e-04	ci right 5.108588e-04	k: 491	n:1050000
MLL3   1050000 perm   930 sec   (1130 perm/sec)   p_kst 4.676190e-04   p_cons 9.754095e-02   p_joint 3.685714e-04

Joint ci ratio: 1.984603e-01	ci left: 3.314200e-04	ci right 4.053172e-04	k: 389	n:1060000
Cons ci ratio: 1.157880e-02	ci left: 9.701214e-02	ci right 9.814289e-02	k: 103431	n:1060000
KS ci ratio: 1.765068e-01	ci left: 4.240467e-04	ci right 5.070245e-04	k: 492	n:1060000
MLL3   1060000 perm   942 sec   (1125 perm/sec)   p_kst 4.641509e-04   p_cons 9.757642e-02   p_joint 3.669811e-04

Joint ci ratio: 1.979535e-01	ci left: 3.300990e-04	ci right 4.034910e-04	k: 391	n:1070000
Cons ci ratio: 1.152314e-02	ci left: 9.703644e-02	ci right 9.816200e-02	k: 104430	n:1070000
KS ci ratio: 1.759723e-01	ci left: 4.227636e-04	ci right 5.052133e-04	k: 495	n:1070000
MLL3   1070000 perm   955 sec   (1120 perm/sec)   p_kst 4.626168e-04   p_cons 9.759813e-02   p_joint 3.654206e-04

Joint ci ratio: 1.982069e-01	ci left: 3.261625e-04	ci right 3.987833e-04	k: 390	n:1080000
Cons ci ratio: 1.146828e-02	ci left: 9.706030e-02	ci right 9.818074e-02	k: 105429	n:1080000
KS ci ratio: 1.754427e-01	ci left: 4.215048e-04	ci right 5.034353e-04	k: 498	n:1080000
MLL3   1080000 perm   968 sec   (1116 perm/sec)   p_kst 4.611111e-04   p_cons 9.761944e-02   p_joint 3.611111e-04

Joint ci ratio: 1.989723e-01	ci left: 3.205546e-04	ci right 3.922359e-04	k: 387	n:1090000
Cons ci ratio: 1.141248e-02	ci left: 9.711028e-02	ci right 9.822580e-02	k: 106457	n:1090000
KS ci ratio: 1.742247e-01	ci left: 4.237788e-04	ci right 5.055193e-04	k: 505	n:1090000
MLL3   1090000 perm   981 sec   (1112 perm/sec)   p_kst 4.633028e-04   p_cons 9.766697e-02   p_joint 3.550459e-04

Joint ci ratio: 2.034818e-01	ci left: 3.029642e-04	ci right 3.724384e-04	k: 370	n:1100000
Cons ci ratio: 1.136492e-02	ci left: 9.704420e-02	ci right 9.815429e-02	k: 107358	n:1100000
KS ci ratio: 1.738816e-01	ci left: 4.216652e-04	ci right 5.028210e-04	k: 507	n:1100000
MLL3   1100000 perm   993 sec   (1107 perm/sec)   p_kst 4.609091e-04   p_cons 9.759818e-02   p_joint 3.363636e-04

Joint ci ratio: 2.077262e-01	ci left: 2.874167e-04	ci right 3.548752e-04	k: 355	n:1110000
Cons ci ratio: 1.131483e-02	ci left: 9.702784e-02	ci right 9.813282e-02	k: 108313	n:1110000
KS ci ratio: 1.725282e-01	ci left: 4.247612e-04	ci right 5.058104e-04	k: 515	n:1110000
MLL3   1110000 perm   1006 sec   (1103 perm/sec)   p_kst 4.639640e-04   p_cons 9.757928e-02   p_joint 3.198198e-04

Joint ci ratio: 2.068564e-01	ci left: 2.873900e-04	ci right 3.545241e-04	k: 358	n:1120000
Cons ci ratio: 1.126077e-02	ci left: 9.708393e-02	ci right 9.818423e-02	k: 109349	n:1120000
KS ci ratio: 1.716983e-01	ci left: 4.252407e-04	ci right 5.059506e-04	k: 520	n:1120000
MLL3   1120000 perm   1019 sec   (1099 perm/sec)   p_kst 4.642857e-04   p_cons 9.763304e-02   p_joint 3.196429e-04

Joint ci ratio: 2.057135e-01	ci left: 2.882037e-04	ci right 3.551091e-04	k: 362	n:1130000
Cons ci ratio: 1.121169e-02	ci left: 9.707283e-02	ci right 9.816818e-02	k: 110310	n:1130000
KS ci ratio: 1.707180e-01	ci left: 4.265598e-04	ci right 5.070102e-04	k: 526	n:1130000
MLL3   1130000 perm   1032 sec   (1095 perm/sec)   p_kst 4.654867e-04   p_cons 9.761947e-02   p_joint 3.203540e-04

Joint ci ratio: 2.037579e-01	ci left: 2.915013e-04	ci right 3.584488e-04	k: 369	n:1140000
Cons ci ratio: 1.116381e-02	ci left: 9.705318e-02	ci right 9.814360e-02	k: 111261	n:1140000
KS ci ratio: 1.700738e-01	ci left: 4.261771e-04	ci right 5.062210e-04	k: 530	n:1140000
MLL3   1140000 perm   1046 sec   (1090 perm/sec)   p_kst 4.649123e-04   p_cons 9.759737e-02   p_joint 3.236842e-04

Joint ci ratio: 2.032096e-01	ci left: 2.906170e-04	ci right 3.571595e-04	k: 371	n:1150000
Cons ci ratio: 1.111462e-02	ci left: 9.706425e-02	ci right 9.814996e-02	k: 112247	n:1150000
KS ci ratio: 1.697546e-01	ci left: 4.241364e-04	ci right 5.036322e-04	k: 532	n:1150000
MLL3   1150000 perm   1059 sec   (1085 perm/sec)   p_kst 4.626087e-04   p_cons 9.760609e-02   p_joint 3.226087e-04

Joint ci ratio: 2.029372e-01	ci left: 2.889299e-04	ci right 3.549864e-04	k: 372	n:1160000
Cons ci ratio: 1.106764e-02	ci left: 9.705019e-02	ci right 9.813113e-02	k: 113204	n:1160000
KS ci ratio: 1.691213e-01	ci left: 4.237821e-04	ci right 5.028849e-04	k: 536	n:1160000
MLL3   1160000 perm   1073 sec   (1081 perm/sec)   p_kst 4.620690e-04   p_cons 9.758966e-02   p_joint 3.206897e-04

Joint ci ratio: 2.015904e-01	ci left: 2.905175e-04	ci right 3.564419e-04	k: 377	n:1170000
Cons ci ratio: 1.102275e-02	ci left: 9.701252e-02	ci right 9.808862e-02	k: 114133	n:1170000
KS ci ratio: 1.683393e-01	ci left: 4.242531e-04	ci right 5.030405e-04	k: 541	n:1170000
MLL3   1170000 perm   1086 sec   (1077 perm/sec)   p_kst 4.623932e-04   p_cons 9.754957e-02   p_joint 3.222222e-04

Joint ci ratio: 2.002700e-01	ci left: 2.920796e-04	ci right 3.578714e-04	k: 382	n:1180000
Cons ci ratio: 1.097766e-02	ci left: 9.698732e-02	ci right 9.805872e-02	k: 115076	n:1180000
KS ci ratio: 1.677216e-01	ci left: 4.239050e-04	ci right 5.023097e-04	k: 545	n:1180000
MLL3   1180000 perm   1100 sec   (1072 perm/sec)   p_kst 4.618644e-04   p_cons 9.752203e-02   p_joint 3.237288e-04

Joint ci ratio: 1.992323e-01	ci left: 2.928184e-04	ci right 3.583933e-04	k: 386	n:1190000
Cons ci ratio: 1.093265e-02	ci left: 9.697011e-02	ci right 9.803689e-02	k: 116028	n:1190000
KS ci ratio: 1.672629e-01	ci left: 4.227580e-04	ci right 5.007152e-04	k: 548	n:1190000
MLL3   1190000 perm   1114 sec   (1068 perm/sec)   p_kst 4.605042e-04   p_cons 9.750252e-02   p_joint 3.243697e-04

Joint ci ratio: 1.994906e-01	ci left: 2.895865e-04	ci right 3.545319e-04	k: 385	n:1200000
Cons ci ratio: 1.088505e-02	ci left: 9.700390e-02	ci right 9.806638e-02	k: 117041	n:1200000
KS ci ratio: 1.663562e-01	ci left: 4.240264e-04	ci right 5.017511e-04	k: 554	n:1200000
MLL3   1200000 perm   1128 sec   (1064 perm/sec)   p_kst 4.616667e-04   p_cons 9.753417e-02   p_joint 3.208333e-04

Joint ci ratio: 2.018587e-01	ci left: 2.801287e-04	ci right 3.437908e-04	k: 376	n:1210000
Cons ci ratio: 1.084045e-02	ci left: 9.699839e-02	ci right 9.805643e-02	k: 118007	n:1210000
KS ci ratio: 1.660574e-01	ci left: 4.221061e-04	ci right 4.993261e-04	k: 556	n:1210000
MLL3   1210000 perm   1144 sec   (1058 perm/sec)   p_kst 4.595041e-04   p_cons 9.752645e-02   p_joint 3.107438e-04

Joint ci ratio: 2.002711e-01	ci left: 2.825031e-04	ci right 3.461381e-04	k: 382	n:1220000
Cons ci ratio: 1.079398e-02	ci left: 9.703223e-02	ci right 9.808608e-02	k: 119021	n:1220000
KS ci ratio: 1.653171e-01	ci left: 4.225747e-04	ci right 4.995014e-04	k: 561	n:1220000
MLL3   1220000 perm   1158 sec   (1053 perm/sec)   p_kst 4.598361e-04   p_cons 9.755820e-02   p_joint 3.131148e-04

Joint ci ratio: 2.029390e-01	ci left: 2.724865e-04	ci right 3.347842e-04	k: 372	n:1230000
Cons ci ratio: 1.075019e-02	ci left: 9.703146e-02	ci right 9.808100e-02	k: 119993	n:1230000
KS ci ratio: 1.640087e-01	ci left: 4.261547e-04	ci right 5.030586e-04	k: 570	n:1230000
MLL3   1230000 perm   1172 sec   (1049 perm/sec)   p_kst 4.634146e-04   p_cons 9.755528e-02   p_joint 3.024390e-04

Joint ci ratio: 2.015922e-01	ci left: 2.741171e-04	ci right 3.363205e-04	k: 377	n:1240000
Cons ci ratio: 1.070767e-02	ci left: 9.701865e-02	ci right 9.806387e-02	k: 120950	n:1240000
KS ci ratio: 1.635797e-01	ci left: 4.250381e-04	ci right 5.015202e-04	k: 573	n:1240000
MLL3   1240000 perm   1186 sec   (1045 perm/sec)   p_kst 4.620968e-04   p_cons 9.754032e-02   p_joint 3.040323e-04

Joint ci ratio: 1.994919e-01	ci left: 2.780028e-04	ci right 3.403508e-04	k: 385	n:1250000
Cons ci ratio: 1.066540e-02	ci left: 9.701004e-02	ci right 9.805102e-02	k: 121912	n:1250000
KS ci ratio: 1.621728e-01	ci left: 4.293118e-04	ci right 5.058337e-04	k: 583	n:1250000
MLL3   1250000 perm   1200 sec   (1041 perm/sec)   p_kst 4.664000e-04   p_cons 9.752960e-02   p_joint 3.080000e-04

Joint ci ratio: 2.005342e-01	ci left: 2.727808e-04	ci right 3.343163e-04	k: 381	n:1260000
Cons ci ratio: 1.062196e-02	ci left: 9.702929e-02	ci right 9.806621e-02	k: 122909	n:1260000
KS ci ratio: 1.617580e-01	ci left: 4.281890e-04	ci right 5.042965e-04	k: 586	n:1260000
MLL3   1260000 perm   1215 sec   (1037 perm/sec)   p_kst 4.650794e-04   p_cons 9.754683e-02   p_joint 3.023810e-04

Joint ci ratio: 1.982123e-01	ci left: 2.773658e-04	ci right 3.391238e-04	k: 390	n:1270000
Cons ci ratio: 1.058150e-02	ci left: 9.700740e-02	ci right 9.804011e-02	k: 123854	n:1270000
KS ci ratio: 1.612097e-01	ci left: 4.278398e-04	ci right 5.036025e-04	k: 590	n:1270000
MLL3   1270000 perm   1229 sec   (1034 perm/sec)   p_kst 4.645669e-04   p_cons 9.752283e-02   p_joint 3.070866e-04

Joint ci ratio: 1.977074e-01	ci left: 2.766839e-04	ci right 3.381142e-04	k: 392	n:1280000
Cons ci ratio: 1.053916e-02	ci left: 9.702482e-02	ci right 9.805356e-02	k: 124849	n:1280000
KS ci ratio: 1.602632e-01	ci left: 4.297461e-04	ci right 5.053566e-04	k: 597	n:1280000
MLL3   1280000 perm   1244 sec   (1029 perm/sec)   p_kst 4.664063e-04   p_cons 9.753828e-02   p_joint 3.062500e-04

Joint ci ratio: 1.969571e-01	ci left: 2.767498e-04	ci right 3.379335e-04	k: 395	n:1290000
Cons ci ratio: 1.049788e-02	ci left: 9.703271e-02	ci right 9.805747e-02	k: 125832	n:1290000
KS ci ratio: 1.595974e-01	ci left: 4.301356e-04	ci right 5.054701e-04	k: 602	n:1290000
MLL3   1290000 perm   1258 sec   (1025 perm/sec)   p_kst 4.666667e-04   p_cons 9.754419e-02   p_joint 3.062016e-04

Joint ci ratio: 1.964617e-01	ci left: 2.760836e-04	ci right 3.369482e-04	k: 397	n:1300000
Cons ci ratio: 1.045932e-02	ci left: 9.700287e-02	ci right 9.802354e-02	k: 126766	n:1300000
KS ci ratio: 1.590707e-01	ci left: 4.297811e-04	ci right 5.047813e-04	k: 606	n:1300000
MLL3   1300000 perm   1273 sec   (1021 perm/sec)   p_kst 4.661538e-04   p_cons 9.751231e-02   p_joint 3.053846e-04

Joint ci ratio: 1.947562e-01	ci left: 2.790580e-04	ci right 3.399809e-04	k: 404	n:1310000
Cons ci ratio: 1.041770e-02	ci left: 9.703214e-02	ci right 9.804903e-02	k: 127777	n:1310000
KS ci ratio: 1.585492e-01	ci left: 4.294324e-04	ci right 5.041027e-04	k: 610	n:1310000
MLL3   1310000 perm   1288 sec   (1017 perm/sec)   p_kst 4.656489e-04   p_cons 9.753969e-02   p_joint 3.083969e-04

Joint ci ratio: 1.940389e-01	ci left: 2.791060e-04	ci right 3.397884e-04	k: 407	n:1320000
Cons ci ratio: 1.037791e-02	ci left: 9.703830e-02	ci right 9.805135e-02	k: 128758	n:1320000
KS ci ratio: 1.580328e-01	ci left: 4.290894e-04	ci right 5.034340e-04	k: 614	n:1320000
MLL3   1320000 perm   1303 sec   (1013 perm/sec)   p_kst 4.651515e-04   p_cons 9.754394e-02   p_joint 3.083333e-04

Joint ci ratio: 1.938016e-01	ci left: 2.777228e-04	ci right 3.380220e-04	k: 408	n:1330000
Cons ci ratio: 1.033845e-02	ci left: 9.704662e-02	ci right 9.805588e-02	k: 129742	n:1330000
KS ci ratio: 1.575214e-01	ci left: 4.287519e-04	ci right 5.027750e-04	k: 618	n:1330000
MLL3   1330000 perm   1318 sec   (1009 perm/sec)   p_kst 4.646617e-04   p_cons 9.755038e-02   p_joint 3.067669e-04

Joint ci ratio: 1.957261e-01	ci left: 2.699711e-04	ci right 3.292387e-04	k: 400	n:1340000
Cons ci ratio: 1.030087e-02	ci left: 9.703026e-02	ci right 9.803566e-02	k: 130693	n:1340000
KS ci ratio: 1.568890e-01	ci left: 4.291368e-04	ci right 5.029009e-04	k: 623	n:1340000
MLL3   1340000 perm   1333 sec   (1005 perm/sec)   p_kst 4.649254e-04   p_cons 9.753209e-02   p_joint 2.985075e-04

Joint ci ratio: 1.945170e-01	ci left: 2.714941e-04	ci right 3.306843e-04	k: 405	n:1350000
Cons ci ratio: 1.026236e-02	ci left: 9.703706e-02	ci right 9.803874e-02	k: 131675	n:1350000
KS ci ratio: 1.561400e-01	ci left: 4.302284e-04	ci right 5.037941e-04	k: 629	n:1350000
MLL3   1350000 perm   1348 sec   (1002 perm/sec)   p_kst 4.659259e-04   p_cons 9.753704e-02   p_joint 3.000000e-04

Joint ci ratio: 1.940397e-01	ci left: 2.708969e-04	ci right 3.297948e-04	k: 407	n:1360000
Cons ci ratio: 1.022569e-02	ci left: 9.701955e-02	ci right 9.801746e-02	k: 132624	n:1360000
KS ci ratio: 1.560165e-01	ci left: 4.277715e-04	ci right 5.008538e-04	k: 630	n:1360000
MLL3   1360000 perm   1363 sec   (998 perm/sec)   p_kst 4.632353e-04   p_cons 9.751765e-02   p_joint 2.992647e-04

Joint ci ratio: 1.935660e-01	ci left: 2.703086e-04	ci right 3.289182e-04	k: 409	n:1370000
Cons ci ratio: 1.018991e-02	ci left: 9.699357e-02	ci right 9.798770e-02	k: 133561	n:1370000
KS ci ratio: 1.556470e-01	ci left: 4.267535e-04	ci right 4.994730e-04	k: 633	n:1370000
MLL3   1370000 perm   1378 sec   (994 perm/sec)   p_kst 4.620438e-04   p_cons 9.748978e-02   p_joint 2.985401e-04

Joint ci ratio: 1.930956e-01	ci left: 2.697289e-04	ci right 3.280541e-04	k: 411	n:1380000
Cons ci ratio: 1.015321e-02	ci left: 9.699038e-02	ci right 9.798087e-02	k: 134529	n:1380000
KS ci ratio: 1.550368e-01	ci left: 4.271434e-04	ci right 4.996176e-04	k: 638	n:1380000
MLL3   1380000 perm   1393 sec   (990 perm/sec)   p_kst 4.623188e-04   p_cons 9.748478e-02   p_joint 2.978261e-04

Joint ci ratio: 1.506211e-01	ci left: 4.503638e-04	ci right 5.244053e-04	k: 676	n:1390000
Cons ci ratio: 1.011612e-02	ci left: 9.700088e-02	ci right 9.798785e-02	k: 135516	n:1390000
KS ci ratio: 1.544338e-01	ci left: 4.275283e-04	ci right 4.997595e-04	k: 643	n:1390000
MLL3   1390000 perm   1409 sec   (987 perm/sec)   p_kst 4.625899e-04   p_cons 9.749353e-02   p_joint 4.863309e-04

Joint ci ratio: 1.507328e-01	ci left: 4.464595e-04	ci right 5.199184e-04	k: 675	n:1400000
Cons ci ratio: 1.008099e-02	ci left: 9.698416e-02	ci right 9.796751e-02	k: 136465	n:1400000
KS ci ratio: 1.538377e-01	ci left: 4.279082e-04	ci right 4.998988e-04	k: 648	n:1400000
MLL3   1400000 perm   1424 sec   (983 perm/sec)   p_kst 4.628571e-04   p_cons 9.747500e-02   p_joint 4.821429e-04

Joint ci ratio: 1.501784e-01	ci left: 4.467057e-04	ci right 5.199105e-04	k: 680	n:1410000
Cons ci ratio: 1.004363e-02	ci left: 9.701297e-02	ci right 9.799294e-02	k: 137478	n:1410000
KS ci ratio: 1.530146e-01	ci left: 4.296474e-04	ci right 5.015084e-04	k: 655	n:1410000
MLL3   1410000 perm   1440 sec   (979 perm/sec)   p_kst 4.645390e-04   p_cons 9.750213e-02   p_joint 4.822695e-04

Joint ci ratio: 1.500685e-01	ci left: 4.442376e-04	ci right 5.169799e-04	k: 681	n:1420000
Cons ci ratio: 1.000832e-02	ci left: 9.701257e-02	ci right 9.798907e-02	k: 138450	n:1420000
KS ci ratio: 1.525503e-01	ci left: 4.293309e-04	ci right 5.009012e-04	k: 659	n:1420000
MLL3   1420000 perm   1456 sec   (975 perm/sec)   p_kst 4.640845e-04   p_cons 9.750000e-02   p_joint 4.795775e-04

Joint ci ratio: 1.496303e-01	ci left: 4.438234e-04	ci right 5.162667e-04	k: 685	n:1430000
Cons ci ratio: 9.973229e-03	ci left: 9.701497e-02	ci right 9.798806e-02	k: 139426	n:1430000
KS ci ratio: 1.518615e-01	ci left: 4.303646e-04	ci right 5.017538e-04	k: 665	n:1430000
MLL3   1430000 perm   1472 sec   (972 perm/sec)   p_kst 4.650350e-04   p_cons 9.750070e-02   p_joint 4.790210e-04

Joint ci ratio: 1.512946e-01	ci left: 4.307165e-04	ci right 5.018732e-04	k: 670	n:1440000
Cons ci ratio: 9.938500e-03	ci left: 9.701735e-02	ci right 9.798705e-02	k: 140402	n:1440000
KS ci ratio: 1.511819e-01	ci left: 4.313847e-04	ci right 5.025939e-04	k: 671	n:1440000
MLL3   1440000 perm   1488 sec   (968 perm/sec)   p_kst 4.659722e-04   p_cons 9.750139e-02   p_joint 4.652778e-04

Joint ci ratio: 1.507340e-01	ci left: 4.310640e-04	ci right 5.019905e-04	k: 675	n:1450000
Cons ci ratio: 9.905336e-03	ci left: 9.699837e-02	ci right 9.796462e-02	k: 141347	n:1450000
KS ci ratio: 1.506226e-01	ci left: 4.317277e-04	ci right 5.027061e-04	k: 676	n:1450000
MLL3   1450000 perm   1504 sec   (964 perm/sec)   p_kst 4.662069e-04   p_cons 9.748069e-02   p_joint 4.655172e-04

Joint ci ratio: 1.512951e-01	ci left: 4.248162e-04	ci right 4.949984e-04	k: 670	n:1460000
Cons ci ratio: 9.870887e-03	ci left: 9.700835e-02	ci right 9.797133e-02	k: 142334	n:1460000
KS ci ratio: 1.500694e-01	ci left: 4.320665e-04	ci right 5.028163e-04	k: 681	n:1460000
MLL3   1460000 perm   1520 sec   (961 perm/sec)   p_kst 4.664384e-04   p_cons 9.748904e-02   p_joint 4.589041e-04

Joint ci ratio: 1.510703e-01	ci left: 4.232353e-04	ci right 4.930430e-04	k: 672	n:1470000
Cons ci ratio: 9.839534e-03	ci left: 9.696934e-02	ci right 9.792885e-02	k: 143249	n:1470000
KS ci ratio: 1.497405e-01	ci left: 4.310915e-04	ci right 5.015131e-04	k: 684	n:1470000
MLL3   1470000 perm   1536 sec   (957 perm/sec)   p_kst 4.653061e-04   p_cons 9.744830e-02   p_joint 4.571429e-04

Joint ci ratio: 1.506233e-01	ci left: 4.229763e-04	ci right 4.925163e-04	k: 676	n:1480000
Cons ci ratio: 9.805877e-03	ci left: 9.697737e-02	ci right 9.793366e-02	k: 144233	n:1480000
KS ci ratio: 1.490890e-01	ci left: 4.320813e-04	ci right 5.023300e-04	k: 690	n:1480000
MLL3   1480000 perm   1552 sec   (954 perm/sec)   p_kst 4.662162e-04   p_cons 9.745473e-02   p_joint 4.567568e-04

Joint ci ratio: 1.502908e-01	ci left: 4.220752e-04	ci right 4.913000e-04	k: 679	n:1490000
Cons ci ratio: 9.773459e-03	ci left: 9.696923e-02	ci right 9.792227e-02	k: 145193	n:1490000
KS ci ratio: 1.484458e-01	ci left: 4.330584e-04	ci right 5.031353e-04	k: 696	n:1490000
MLL3   1490000 perm   1568 sec   (950 perm/sec)   p_kst 4.671141e-04   p_cons 9.744497e-02   p_joint 4.557047e-04

Joint ci ratio: 1.498507e-01	ci left: 4.218279e-04	ci right 4.907914e-04	k: 683	n:1500000
Cons ci ratio: 9.739256e-03	ci left: 9.699913e-02	ci right 9.794910e-02	k: 146210	n:1500000
KS ci ratio: 1.480217e-01	ci left: 4.327391e-04	ci right 5.025466e-04	k: 700	n:1500000
MLL3   1500000 perm   1584 sec   (947 perm/sec)   p_kst 4.666667e-04   p_cons 9.747333e-02   p_joint 4.553333e-04

Joint ci ratio: 1.549187e-01	ci left: 3.910055e-04	ci right 4.572928e-04	k: 639	n:1510000
Cons ci ratio: 9.709064e-03	ci left: 9.696255e-02	ci right 9.790920e-02	k: 147127	n:1510000
KS ci ratio: 1.473922e-01	ci left: 4.336999e-04	ci right 5.033387e-04	k: 706	n:1510000
MLL3   1510000 perm   1601 sec   (943 perm/sec)   p_kst 4.675497e-04   p_cons 9.743510e-02   p_joint 4.231788e-04

Joint ci ratio: 1.545570e-01	ci left: 3.903303e-04	ci right 4.563343e-04	k: 642	n:1520000
Cons ci ratio: 9.676941e-03	ci left: 9.696650e-02	ci right 9.791004e-02	k: 148105	n:1520000
KS ci ratio: 1.465652e-01	ci left: 4.359163e-04	ci right 5.054838e-04	k: 714	n:1520000
MLL3   1520000 perm   1617 sec   (940 perm/sec)   p_kst 4.697368e-04   p_cons 9.743750e-02   p_joint 4.223684e-04

Joint ci ratio: 1.545572e-01	ci left: 3.877791e-04	ci right 4.533518e-04	k: 642	n:1530000
Cons ci ratio: 9.644312e-03	ci left: 9.698540e-02	ci right 9.792593e-02	k: 149106	n:1530000
KS ci ratio: 1.460553e-01	ci left: 4.362155e-04	ci right 5.055675e-04	k: 719	n:1530000
MLL3   1530000 perm   1634 sec   (936 perm/sec)   p_kst 4.699346e-04   p_cons 9.745490e-02   p_joint 4.196078e-04

Joint ci ratio: 1.540787e-01	ci left: 3.877582e-04	ci right 4.531056e-04	k: 646	n:1540000
Cons ci ratio: 9.611442e-03	ci left: 9.701443e-02	ci right 9.795202e-02	k: 150123	n:1540000
KS ci ratio: 1.455508e-01	ci left: 4.365112e-04	ci right 5.056497e-04	k: 724	n:1540000
MLL3   1540000 perm   1650 sec   (933 perm/sec)   p_kst 4.701299e-04   p_cons 9.748247e-02   p_joint 4.194805e-04

Joint ci ratio: 1.536046e-01	ci left: 3.877378e-04	ci right 4.528622e-04	k: 650	n:1550000
Cons ci ratio: 9.580276e-03	ci left: 9.701799e-02	ci right 9.795255e-02	k: 151101	n:1550000
KS ci ratio: 1.451510e-01	ci left: 4.361818e-04	ci right 5.050618e-04	k: 728	n:1550000
MLL3   1550000 perm   1667 sec   (930 perm/sec)   p_kst 4.696774e-04   p_cons 9.748452e-02   p_joint 4.193548e-04

Joint ci ratio: 1.531349e-01	ci left: 3.877180e-04	ci right 4.526217e-04	k: 654	n:1560000
Cons ci ratio: 9.548020e-03	ci left: 9.704709e-02	ci right 9.797876e-02	k: 152119	n:1560000
KS ci ratio: 1.448533e-01	ci left: 4.352391e-04	ci right 5.038171e-04	k: 731	n:1560000
MLL3   1560000 perm   1684 sec   (927 perm/sec)   p_kst 4.685897e-04   p_cons 9.751218e-02   p_joint 4.192308e-04

Joint ci ratio: 1.527854e-01	ci left: 3.870862e-04	ci right 4.517227e-04	k: 657	n:1570000
Cons ci ratio: 9.516501e-03	ci left: 9.706820e-02	ci right 9.799698e-02	k: 153125	n:1570000
KS ci ratio: 1.446560e-01	ci left: 4.336946e-04	ci right 5.019281e-04	k: 733	n:1570000
MLL3   1570000 perm   1700 sec   (923 perm/sec)   p_kst 4.668790e-04   p_cons 9.753185e-02   p_joint 4.184713e-04

Joint ci ratio: 1.520935e-01	ci left: 3.882889e-04	ci right 4.528058e-04	k: 663	n:1580000
Cons ci ratio: 9.486076e-03	ci left: 9.707452e-02	ci right 9.800038e-02	k: 154108	n:1580000
KS ci ratio: 1.441658e-01	ci left: 4.339999e-04	ci right 5.020301e-04	k: 738	n:1580000
MLL3   1580000 perm   1717 sec   (920 perm/sec)   p_kst 4.670886e-04   p_cons 9.753671e-02   p_joint 4.196203e-04

Joint ci ratio: 1.539607e-01	ci left: 3.761691e-04	ci right 4.395103e-04	k: 647	n:1590000
Cons ci ratio: 9.456244e-03	ci left: 9.707511e-02	ci right 9.799805e-02	k: 155082	n:1590000
KS ci ratio: 1.438741e-01	ci left: 4.330891e-04	ci right 5.008275e-04	k: 741	n:1590000
MLL3   1590000 perm   1735 sec   (917 perm/sec)   p_kst 4.660377e-04   p_cons 9.753585e-02   p_joint 4.069182e-04

Joint ci ratio: 1.536056e-01	ci left: 3.756208e-04	ci right 4.387105e-04	k: 650	n:1600000
Cons ci ratio: 9.427028e-03	ci left: 9.706947e-02	ci right 9.798949e-02	k: 156046	n:1600000
KS ci ratio: 1.433918e-01	ci left: 4.333950e-04	ci right 5.009345e-04	k: 746	n:1600000
MLL3   1600000 perm   1751 sec   (914 perm/sec)   p_kst 4.662500e-04   p_cons 9.752875e-02   p_joint 4.062500e-04

Joint ci ratio: 1.641616e-01	ci left: 3.249746e-04	ci right 3.836795e-04	k: 569	n:1610000
Cons ci ratio: 9.397218e-03	ci left: 9.708002e-02	ci right 9.799721e-02	k: 157036	n:1610000
KS ci ratio: 1.425355e-01	ci left: 4.360933e-04	ci right 5.036130e-04	k: 755	n:1610000
MLL3   1610000 perm   1768 sec   (911 perm/sec)   p_kst 4.689441e-04   p_cons 9.753789e-02   p_joint 3.534161e-04

Joint ci ratio: 1.635886e-01	ci left: 3.253365e-04	ci right 3.838814e-04	k: 573	n:1620000
Cons ci ratio: 9.367657e-03	ci left: 9.709105e-02	ci right 9.800545e-02	k: 158027	n:1620000
KS ci ratio: 1.423475e-01	ci left: 4.345919e-04	ci right 5.017828e-04	k: 757	n:1620000
MLL3   1620000 perm   1785 sec   (908 perm/sec)   p_kst 4.672840e-04   p_cons 9.754753e-02   p_joint 3.537037e-04

Joint ci ratio: 1.656217e-01	ci left: 3.151052e-04	ci right 3.725840e-04	k: 559	n:1630000
Cons ci ratio: 9.339641e-03	ci left: 9.707808e-02	ci right 9.798961e-02	k: 158979	n:1630000
KS ci ratio: 1.417873e-01	ci left: 4.354758e-04	ci right 5.025161e-04	k: 763	n:1630000
MLL3   1630000 perm   1802 sec   (905 perm/sec)   p_kst 4.680982e-04   p_cons 9.753313e-02   p_joint 3.429448e-04

Joint ci ratio: 1.653268e-01	ci left: 3.143528e-04	ci right 3.715822e-04	k: 561	n:1640000
Cons ci ratio: 9.309232e-03	ci left: 9.711517e-02	ci right 9.802406e-02	k: 160013	n:1640000
KS ci ratio: 1.414176e-01	ci left: 4.351731e-04	ci right 5.019774e-04	k: 767	n:1640000
MLL3   1640000 perm   1820 sec   (901 perm/sec)   p_kst 4.676829e-04   p_cons 9.756890e-02   p_joint 3.420732e-04

Joint ci ratio: 1.650335e-01	ci left: 3.136097e-04	ci right 3.705923e-04	k: 563	n:1650000
Cons ci ratio: 9.281289e-03	ci left: 9.711069e-02	ci right 9.801679e-02	k: 160979	n:1650000
KS ci ratio: 1.409595e-01	ci left: 4.354590e-04	ci right 5.020723e-04	k: 772	n:1650000
MLL3   1650000 perm   1838 sec   (898 perm/sec)   p_kst 4.678788e-04   p_cons 9.756303e-02   p_joint 3.412121e-04

Joint ci ratio: 1.645964e-01	ci left: 3.134532e-04	ci right 3.702416e-04	k: 566	n:1660000
Cons ci ratio: 9.253153e-03	ci left: 9.711468e-02	ci right 9.801805e-02	k: 161959	n:1660000
KS ci ratio: 1.405963e-01	ci left: 4.351605e-04	ci right 5.015423e-04	k: 776	n:1660000
MLL3   1660000 perm   1856 sec   (895 perm/sec)   p_kst 4.674699e-04   p_cons 9.756566e-02   p_joint 3.409639e-04

Joint ci ratio: 1.641627e-01	ci left: 3.132987e-04	ci right 3.698948e-04	k: 569	n:1670000
Cons ci ratio: 9.225961e-03	ci left: 9.710548e-02	ci right 9.800610e-02	k: 162917	n:1670000
KS ci ratio: 1.403257e-01	ci left: 4.342880e-04	ci right 5.003985e-04	k: 779	n:1670000
MLL3   1670000 perm   1873 sec   (892 perm/sec)   p_kst 4.664671e-04   p_cons 9.755509e-02   p_joint 3.407186e-04

Joint ci ratio: 1.635896e-01	ci left: 3.137171e-04	ci right 3.701716e-04	k: 573	n:1680000
Cons ci ratio: 9.198759e-03	ci left: 9.710114e-02	ci right 9.799906e-02	k: 163883	n:1680000
KS ci ratio: 1.400567e-01	ci left: 4.334260e-04	ci right 4.992683e-04	k: 782	n:1680000
MLL3   1680000 perm   1891 sec   (889 perm/sec)   p_kst 4.654762e-04   p_cons 9.754940e-02   p_joint 3.410714e-04

Joint ci ratio: 1.653277e-01	ci left: 3.050523e-04	ci right 3.605888e-04	k: 561	n:1690000
Cons ci ratio: 9.173215e-03	ci left: 9.706970e-02	ci right 9.796482e-02	k: 164803	n:1690000
KS ci ratio: 1.397892e-01	ci left: 4.325744e-04	ci right 4.981513e-04	k: 785	n:1690000
MLL3   1690000 perm   1908 sec   (886 perm/sec)   p_kst 4.644970e-04   p_cons 9.751657e-02   p_joint 3.319527e-04

Joint ci ratio: 1.648882e-01	ci left: 3.049497e-04	ci right 3.603052e-04	k: 564	n:1700000
Cons ci ratio: 9.147423e-03	ci left: 9.704743e-02	ci right 9.793982e-02	k: 165738	n:1700000
KS ci ratio: 1.393467e-01	ci left: 4.328683e-04	ci right 4.982648e-04	k: 790	n:1700000
MLL3   1700000 perm   1927 sec   (882 perm/sec)   p_kst 4.647059e-04   p_cons 9.749294e-02   p_joint 3.317647e-04

Joint ci ratio: 1.657712e-01	ci left: 2.998027e-04	ci right 3.545444e-04	k: 558	n:1710000
Cons ci ratio: 9.121423e-03	ci left: 9.703361e-02	ci right 9.792331e-02	k: 166687	n:1710000
KS ci ratio: 1.390833e-01	ci left: 4.320302e-04	ci right 4.971664e-04	k: 793	n:1710000
MLL3   1710000 perm   1946 sec   (879 perm/sec)   p_kst 4.637427e-04   p_cons 9.747778e-02   p_joint 3.263158e-04

Joint ci ratio: 1.653282e-01	ci left: 2.997316e-04	ci right 3.542995e-04	k: 561	n:1720000
Cons ci ratio: 9.094051e-03	ci left: 9.705069e-02	ci right 9.793787e-02	k: 167689	n:1720000
KS ci ratio: 1.385607e-01	ci left: 4.328856e-04	ci right 4.978854e-04	k: 799	n:1720000
MLL3   1720000 perm   1964 sec   (876 perm/sec)   p_kst 4.645349e-04   p_cons 9.749360e-02   p_joint 3.261628e-04

Joint ci ratio: 1.648887e-01	ci left: 2.996615e-04	ci right 3.540572e-04	k: 564	n:1730000
Cons ci ratio: 9.067460e-03	ci left: 9.705720e-02	ci right 9.794183e-02	k: 168673	n:1730000
KS ci ratio: 1.382156e-01	ci left: 4.326155e-04	ci right 4.973996e-04	k: 803	n:1730000
MLL3   1730000 perm   1983 sec   (873 perm/sec)   p_kst 4.641618e-04   p_cons 9.749884e-02   p_joint 3.260116e-04

Joint ci ratio: 1.647430e-01	ci left: 2.984903e-04	ci right 3.526208e-04	k: 565	n:1740000
Cons ci ratio: 9.041130e-03	ci left: 9.706307e-02	ci right 9.794517e-02	k: 169656	n:1740000
KS ci ratio: 1.379585e-01	ci left: 4.317937e-04	ci right 4.963246e-04	k: 806	n:1740000
MLL3   1740000 perm   2001 sec   (870 perm/sec)   p_kst 4.632184e-04   p_cons 9.750345e-02   p_joint 3.247126e-04

Joint ci ratio: 1.645978e-01	ci left: 2.973325e-04	ci right 3.512008e-04	k: 566	n:1750000
Cons ci ratio: 9.016668e-03	ci left: 9.703693e-02	ci right 9.791640e-02	k: 170583	n:1750000
KS ci ratio: 1.377880e-01	ci left: 4.304297e-04	ci right 4.946708e-04	k: 808	n:1750000
MLL3   1750000 perm   2019 sec   (867 perm/sec)   p_kst 4.617143e-04   p_cons 9.747600e-02   p_joint 3.234286e-04

Joint ci ratio: 1.641641e-01	ci left: 2.972775e-04	ci right 3.509800e-04	k: 569	n:1760000
Cons ci ratio: 8.990138e-03	ci left: 9.705533e-02	ci right 9.793236e-02	k: 171588	n:1760000
KS ci ratio: 1.372798e-01	ci left: 4.312759e-04	ci right 4.953865e-04	k: 814	n:1760000
MLL3   1760000 perm   2036 sec   (864 perm/sec)   p_kst 4.625000e-04   p_cons 9.749318e-02   p_joint 3.232955e-04

Joint ci ratio: 1.654763e-01	ci left: 2.907229e-04	ci right 3.437029e-04	k: 560	n:1770000
Cons ci ratio: 8.963956e-03	ci left: 9.707126e-02	ci right 9.794587e-02	k: 172589	n:1770000
KS ci ratio: 1.366939e-01	ci left: 4.326586e-04	ci right 4.966779e-04	k: 821	n:1770000
MLL3   1770000 perm   2054 sec   (862 perm/sec)   p_kst 4.638418e-04   p_cons 9.750791e-02   p_joint 3.163842e-04

Joint ci ratio: 1.648894e-01	ci left: 2.912439e-04	ci right 3.441119e-04	k: 564	n:1780000
Cons ci ratio: 8.938658e-03	ci left: 9.707413e-02	ci right 9.794628e-02	k: 173567	n:1780000
KS ci ratio: 1.361155e-01	ci left: 4.340264e-04	ci right 4.979542e-04	k: 828	n:1780000
MLL3   1780000 perm   2072 sec   (859 perm/sec)   p_kst 4.651685e-04   p_cons 9.750955e-02   p_joint 3.168539e-04

Joint ci ratio: 1.674284e-01	ci left: 2.805144e-04	ci right 3.322979e-04	k: 547	n:1790000
Cons ci ratio: 8.914648e-03	ci left: 9.705578e-02	ci right 9.792541e-02	k: 174507	n:1790000
KS ci ratio: 1.357068e-01	ci left: 4.343000e-04	ci right 4.980606e-04	k: 833	n:1790000
MLL3   1790000 perm   2090 sec   (856 perm/sec)   p_kst 4.653631e-04   p_cons 9.748994e-02   p_joint 3.055866e-04

Joint ci ratio: 1.669720e-01	ci left: 2.805529e-04	ci right 3.321882e-04	k: 550	n:1800000
Cons ci ratio: 8.890634e-03	ci left: 9.704152e-02	ci right 9.790867e-02	k: 175454	n:1800000
KS ci ratio: 1.355445e-01	ci left: 4.329606e-04	ci right 4.964424e-04	k: 835	n:1800000
MLL3   1800000 perm   2109 sec   (854 perm/sec)   p_kst 4.638889e-04   p_cons 9.747444e-02   p_joint 3.055556e-04

Joint ci ratio: 1.671239e-01	ci left: 2.784735e-04	ci right 3.297774e-04	k: 549	n:1810000
Cons ci ratio: 8.867175e-03	ci left: 9.702025e-02	ci right 9.788491e-02	k: 176388	n:1810000
KS ci ratio: 1.349805e-01	ci left: 4.343051e-04	ci right 4.976978e-04	k: 842	n:1810000
MLL3   1810000 perm   2127 sec   (851 perm/sec)   p_kst 4.651934e-04   p_cons 9.745193e-02   p_joint 3.033149e-04

Joint ci ratio: 1.666700e-01	ci left: 2.785229e-04	ci right 3.296825e-04	k: 552	n:1820000
Cons ci ratio: 8.843127e-03	ci left: 9.701457e-02	ci right 9.787682e-02	k: 177350	n:1820000
KS ci ratio: 1.348208e-01	ci left: 4.329806e-04	ci right 4.960992e-04	k: 844	n:1820000
MLL3   1820000 perm   2146 sec   (848 perm/sec)   p_kst 4.637363e-04   p_cons 9.744505e-02   p_joint 3.032967e-04

Joint ci ratio: 1.663695e-01	ci left: 2.780483e-04	ci right 3.290194e-04	k: 554	n:1830000
Cons ci ratio: 8.818041e-03	ci left: 9.703350e-02	ci right 9.789346e-02	k: 178357	n:1830000
KS ci ratio: 1.343446e-01	ci left: 4.337829e-04	ci right 4.967773e-04	k: 850	n:1830000
MLL3   1830000 perm   2165 sec   (845 perm/sec)   p_kst 4.644809e-04   p_cons 9.746284e-02   p_joint 3.027322e-04

Joint ci ratio: 1.663696e-01	ci left: 2.765372e-04	ci right 3.272313e-04	k: 554	n:1840000
Cons ci ratio: 8.793656e-03	ci left: 9.704246e-02	ci right 9.790011e-02	k: 179346	n:1840000
KS ci ratio: 1.341085e-01	ci left: 4.330010e-04	ci right 4.957625e-04	k: 853	n:1840000
MLL3   1840000 perm   2183 sec   (843 perm/sec)   p_kst 4.635870e-04   p_cons 9.747065e-02   p_joint 3.010870e-04

Joint ci ratio: 1.657732e-01	ci left: 2.771147e-04	ci right 3.277144e-04	k: 558	n:1850000
Cons ci ratio: 8.769095e-03	ci left: 9.705888e-02	ci right 9.791427e-02	k: 180349	n:1850000
KS ci ratio: 1.337176e-01	ci left: 4.332727e-04	ci right 4.958759e-04	k: 858	n:1850000
MLL3   1850000 perm   2201 sec   (840 perm/sec)   p_kst 4.637838e-04   p_cons 9.748595e-02   p_joint 3.016216e-04

Joint ci ratio: 1.657734e-01	ci left: 2.756248e-04	ci right 3.259525e-04	k: 558	n:1860000
Cons ci ratio: 8.745433e-03	ci left: 9.706118e-02	ci right 9.791427e-02	k: 181326	n:1860000
KS ci ratio: 1.334848e-01	ci left: 4.325022e-04	ci right 4.948767e-04	k: 861	n:1860000
MLL3   1860000 perm   2220 sec   (838 perm/sec)   p_kst 4.629032e-04   p_cons 9.748710e-02   p_joint 3.000000e-04

Joint ci ratio: 1.651834e-01	ci left: 2.762013e-04	ci right 3.264370e-04	k: 562	n:1870000
Cons ci ratio: 8.722306e-03	ci left: 9.705652e-02	ci right 9.790730e-02	k: 182290	n:1870000
KS ci ratio: 1.330226e-01	ci left: 4.332910e-04	ci right 4.955458e-04	k: 867	n:1870000
MLL3   1870000 perm   2239 sec   (835 perm/sec)   p_kst 4.636364e-04   p_cons 9.748128e-02   p_joint 3.005348e-04

Joint ci ratio: 1.648908e-01	ci left: 2.757520e-04	ci right 3.258084e-04	k: 564	n:1880000
Cons ci ratio: 8.699231e-03	ci left: 9.705456e-02	ci right 9.790306e-02	k: 183259	n:1880000
KS ci ratio: 1.326411e-01	ci left: 4.335574e-04	ci right 4.956578e-04	k: 872	n:1880000
MLL3   1880000 perm   2259 sec   (832 perm/sec)   p_kst 4.638298e-04   p_cons 9.747819e-02   p_joint 3.000000e-04

Joint ci ratio: 1.647452e-01	ci left: 2.748003e-04	ci right 3.246354e-04	k: 565	n:1890000
Cons ci ratio: 8.675451e-03	ci left: 9.707058e-02	ci right 9.791690e-02	k: 184262	n:1890000
KS ci ratio: 1.324138e-01	ci left: 4.327981e-04	ci right 4.946752e-04	k: 875	n:1890000
MLL3   1890000 perm   2278 sec   (830 perm/sec)   p_kst 4.629630e-04   p_cons 9.749312e-02   p_joint 2.989418e-04

Joint ci ratio: 1.657739e-01	ci left: 2.698221e-04	ci right 3.190904e-04	k: 558	n:1900000
Cons ci ratio: 8.651528e-03	ci left: 9.709327e-02	ci right 9.793743e-02	k: 185278	n:1900000
KS ci ratio: 1.323384e-01	ci left: 4.310291e-04	ci right 4.926154e-04	k: 876	n:1900000
MLL3   1900000 perm   2297 sec   (827 perm/sec)   p_kst 4.610526e-04   p_cons 9.751474e-02   p_joint 2.936842e-04

Joint ci ratio: 1.657740e-01	ci left: 2.684094e-04	ci right 3.174198e-04	k: 558	n:1910000
Cons ci ratio: 8.628931e-03	ci left: 9.709273e-02	ci right 9.793467e-02	k: 186250	n:1910000
KS ci ratio: 1.321127e-01	ci left: 4.302911e-04	ci right 4.916589e-04	k: 879	n:1910000
MLL3   1910000 perm   2316 sec   (825 perm/sec)   p_kst 4.602094e-04   p_cons 9.751309e-02   p_joint 2.921466e-04

Joint ci ratio: 1.651840e-01	ci left: 2.690085e-04	ci right 3.179361e-04	k: 562	n:1920000
Cons ci ratio: 8.606409e-03	ci left: 9.709427e-02	ci right 9.793402e-02	k: 187226	n:1920000
KS ci ratio: 1.316646e-01	ci left: 4.310719e-04	ci right 4.923262e-04	k: 885	n:1920000
MLL3   1920000 perm   2336 sec   (822 perm/sec)   p_kst 4.609375e-04   p_cons 9.751354e-02   p_joint 2.927083e-04

Joint ci ratio: 1.644553e-01	ci left: 2.700985e-04	ci right 3.189862e-04	k: 567	n:1930000
Cons ci ratio: 8.582849e-03	ci left: 9.712063e-02	ci right 9.795830e-02	k: 188250	n:1930000
KS ci ratio: 1.311474e-01	ci left: 4.323461e-04	ci right 4.935213e-04	k: 892	n:1930000
MLL3   1930000 perm   2355 sec   (820 perm/sec)   p_kst 4.621762e-04   p_cons 9.753886e-02   p_joint 2.937824e-04

Joint ci ratio: 1.643108e-01	ci left: 2.692005e-04	ci right 3.178786e-04	k: 568	n:1940000
Cons ci ratio: 8.560233e-03	ci left: 9.713128e-02	ci right 9.796682e-02	k: 189244	n:1940000
KS ci ratio: 1.310009e-01	ci left: 4.311147e-04	ci right 4.920422e-04	k: 894	n:1940000
MLL3   1940000 perm   2374 sec   (817 perm/sec)   p_kst 4.608247e-04   p_cons 9.754845e-02   p_joint 2.927835e-04

Joint ci ratio: 1.637362e-01	ci left: 2.697871e-04	ci right 3.183839e-04	k: 572	n:1950000
Cons ci ratio: 8.537920e-03	ci left: 9.713927e-02	ci right 9.797269e-02	k: 190233	n:1950000
KS ci ratio: 1.308548e-01	ci left: 4.298958e-04	ci right 4.905781e-04	k: 896	n:1950000
MLL3   1950000 perm   2393 sec   (815 perm/sec)   p_kst 4.594872e-04   p_cons 9.755538e-02   p_joint 2.933333e-04

Joint ci ratio: 1.631677e-01	ci left: 2.703679e-04	ci right 3.188837e-04	k: 576	n:1960000
Cons ci ratio: 8.516594e-03	ci left: 9.713038e-02	ci right 9.796163e-02	k: 191189	n:1960000
KS ci ratio: 1.304193e-01	ci left: 4.306637e-04	ci right 4.912364e-04	k: 902	n:1960000
MLL3   1960000 perm   2413 sec   (812 perm/sec)   p_kst 4.602041e-04   p_cons 9.754541e-02   p_joint 2.938776e-04

Joint ci ratio: 1.630265e-01	ci left: 2.694824e-04	ci right 3.177933e-04	k: 577	n:1970000
Cons ci ratio: 8.494962e-03	ci left: 9.713120e-02	ci right 9.796034e-02	k: 192164	n:1970000
KS ci ratio: 1.302752e-01	ci left: 4.294597e-04	ci right 4.897911e-04	k: 904	n:1970000
MLL3   1970000 perm   2433 sec   (810 perm/sec)   p_kst 4.588832e-04   p_cons 9.754518e-02   p_joint 2.928934e-04

Joint ci ratio: 1.623259e-01	ci left: 2.705438e-04	ci right 3.188162e-04	k: 582	n:1980000
Cons ci ratio: 8.473932e-03	ci left: 9.712295e-02	ci right 9.794995e-02	k: 193121	n:1980000
KS ci ratio: 1.298455e-01	ci left: 4.302224e-04	ci right 4.904462e-04	k: 910	n:1980000
MLL3   1980000 perm   2453 sec   (807 perm/sec)   p_kst 4.595960e-04   p_cons 9.753586e-02   p_joint 2.939394e-04

Joint ci ratio: 1.619098e-01	ci left: 2.706307e-04	ci right 3.187828e-04	k: 585	n:1990000
Cons ci ratio: 8.452526e-03	ci left: 9.712581e-02	ci right 9.795074e-02	k: 194100	n:1990000
KS ci ratio: 1.294906e-01	ci left: 4.304916e-04	ci right 4.905757e-04	k: 915	n:1990000
MLL3   1990000 perm   2472 sec   (805 perm/sec)   p_kst 4.597990e-04   p_cons 9.753769e-02   p_joint 2.939698e-04

Joint ci ratio: 1.616343e-01	ci left: 2.702371e-04	ci right 3.182293e-04	k: 587	n:2000000
Cons ci ratio: 8.431377e-03	ci left: 9.712665e-02	ci right 9.794951e-02	k: 195075	n:2000000
KS ci ratio: 1.293496e-01	ci left: 4.293067e-04	ci right 4.891552e-04	k: 917	n:2000000
MLL3   2000000 perm   2493 sec   (802 perm/sec)   p_kst 4.585000e-04   p_cons 9.753750e-02   p_joint 2.935000e-04

Joint ci ratio: 1.612235e-01	ci left: 2.703248e-04	ci right 3.181989e-04	k: 590	n:2010000
Cons ci ratio: 8.411219e-03	ci left: 9.711011e-02	ci right 9.793085e-02	k: 196015	n:2010000
KS ci ratio: 1.289987e-01	ci left: 4.295780e-04	ci right 4.892895e-04	k: 922	n:2010000
MLL3   2010000 perm   2513 sec   (800 perm/sec)   p_kst 4.587065e-04   p_cons 9.751990e-02   p_joint 2.935323e-04

Joint ci ratio: 1.608159e-01	ci left: 2.704119e-04	ci right 3.181686e-04	k: 593	n:2020000
Cons ci ratio: 8.390590e-03	ci left: 9.710658e-02	ci right 9.792527e-02	k: 196981	n:2020000
KS ci ratio: 1.287896e-01	ci left: 4.288887e-04	ci right 4.884003e-04	k: 925	n:2020000
MLL3   2020000 perm   2534 sec   (797 perm/sec)   p_kst 4.579208e-04   p_cons 9.751535e-02   p_joint 2.935644e-04

Joint ci ratio: 1.608160e-01	ci left: 2.690798e-04	ci right 3.166013e-04	k: 593	n:2030000
Cons ci ratio: 8.369082e-03	ci left: 9.712472e-02	ci right 9.794146e-02	k: 197991	n:2030000
KS ci ratio: 1.285816e-01	ci left: 4.282062e-04	ci right 4.875198e-04	k: 928	n:2030000
MLL3   2030000 perm   2554 sec   (795 perm/sec)   p_kst 4.571429e-04   p_cons 9.753251e-02   p_joint 2.921182e-04

Joint ci ratio: 1.602772e-01	ci left: 2.696428e-04	ci right 3.170888e-04	k: 597	n:2040000
Cons ci ratio: 8.347785e-03	ci left: 9.714170e-02	ci right 9.795650e-02	k: 198999	n:2040000
KS ci ratio: 1.284435e-01	ci left: 4.270560e-04	ci right 4.861419e-04	k: 930	n:2040000
MLL3   2040000 perm   2574 sec   (792 perm/sec)   p_kst 4.558824e-04   p_cons 9.754853e-02   p_joint 2.926471e-04

Joint ci ratio: 1.604115e-01	ci left: 2.678592e-04	ci right 3.150347e-04	k: 596	n:2050000
Cons ci ratio: 8.326488e-03	ci left: 9.716194e-02	ci right 9.797481e-02	k: 200014	n:2050000
KS ci ratio: 1.281684e-01	ci left: 4.268614e-04	ci right 4.857843e-04	k: 934	n:2050000
MLL3   2050000 perm   2595 sec   (790 perm/sec)   p_kst 4.556098e-04   p_cons 9.756780e-02   p_joint 2.907317e-04

Joint ci ratio: 1.597439e-01	ci left: 2.688889e-04	ci right 3.160297e-04	k: 601	n:2060000
Cons ci ratio: 8.306590e-03	ci left: 9.715581e-02	ci right 9.796668e-02	k: 200975	n:2060000
KS ci ratio: 1.278952e-01	ci left: 4.266688e-04	ci right 4.854300e-04	k: 938	n:2060000
MLL3   2060000 perm   2615 sec   (788 perm/sec)   p_kst 4.553398e-04   p_cons 9.756068e-02   p_joint 2.917476e-04

Joint ci ratio: 1.590845e-01	ci left: 2.699090e-04	ci right 3.170147e-04	k: 606	n:2070000
Cons ci ratio: 8.286856e-03	ci left: 9.714926e-02	ci right 9.795814e-02	k: 201935	n:2070000
KS ci ratio: 1.273537e-01	ci left: 4.283490e-04	ci right 4.870730e-04	k: 946	n:2070000
MLL3   2070000 perm   2636 sec   (785 perm/sec)   p_kst 4.570048e-04   p_cons 9.755314e-02   p_joint 2.927536e-04

Joint ci ratio: 1.586928e-01	ci left: 2.699964e-04	ci right 3.169902e-04	k: 609	n:2080000
Cons ci ratio: 8.266744e-03	ci left: 9.715382e-02	ci right 9.796076e-02	k: 202918	n:2080000
KS ci ratio: 1.269521e-01	ci left: 4.290825e-04	ci right 4.877076e-04	k: 952	n:2080000
MLL3   2080000 perm   2657 sec   (783 perm/sec)   p_kst 4.576923e-04   p_cons 9.755673e-02   p_joint 2.927885e-04

Joint ci ratio: 1.581750e-01	ci left: 2.705425e-04	ci right 3.174632e-04	k: 613	n:2090000
Cons ci ratio: 8.247987e-03	ci left: 9.713254e-02	ci right 9.793747e-02	k: 203847	n:2090000
KS ci ratio: 1.266204e-01	ci left: 4.293459e-04	ci right 4.878422e-04	k: 957	n:2090000
MLL3   2090000 perm   2678 sec   (780 perm/sec)   p_kst 4.578947e-04   p_cons 9.753445e-02   p_joint 2.933014e-04

Joint ci ratio: 1.324925e-01	ci left: 3.890573e-04	ci right 4.447164e-04	k: 874	n:2100000
Cons ci ratio: 8.228311e-03	ci left: 9.713381e-02	ci right 9.793682e-02	k: 204823	n:2100000
KS ci ratio: 1.264226e-01	ci left: 4.286847e-04	ci right 4.869929e-04	k: 960	n:2100000
MLL3   2100000 perm   2699 sec   (778 perm/sec)   p_kst 4.571429e-04   p_cons 9.753476e-02   p_joint 4.161905e-04

Joint ci ratio: 1.320405e-01	ci left: 3.899630e-04	ci right 4.455464e-04	k: 880	n:2110000
Cons ci ratio: 8.208996e-03	ci left: 9.713034e-02	ci right 9.793143e-02	k: 205789	n:2110000
KS ci ratio: 1.260298e-01	ci left: 4.294069e-04	ci right 4.876182e-04	k: 966	n:2110000
MLL3   2110000 perm   2720 sec   (776 perm/sec)   p_kst 4.578199e-04   p_cons 9.753033e-02   p_joint 4.170616e-04

Joint ci ratio: 1.318910e-01	ci left: 3.890358e-04	ci right 4.444193e-04	k: 882	n:2120000
Cons ci ratio: 8.189268e-03	ci left: 9.713867e-02	ci right 9.793790e-02	k: 206780	n:2120000
KS ci ratio: 1.259648e-01	ci left: 4.278382e-04	ci right 4.858047e-04	k: 967	n:2120000
MLL3   2120000 perm   2741 sec   (773 perm/sec)   p_kst 4.561321e-04   p_cons 9.753774e-02   p_joint 4.160377e-04

Joint ci ratio: 1.315933e-01	ci left: 3.890254e-04	ci right 4.442726e-04	k: 886	n:2130000
Cons ci ratio: 8.169681e-03	ci left: 9.714693e-02	ci right 9.794430e-02	k: 207771	n:2130000
KS ci ratio: 1.258349e-01	ci left: 4.267389e-04	ci right 4.844925e-04	k: 969	n:2130000
MLL3   2130000 perm   2762 sec   (771 perm/sec)   p_kst 4.549296e-04   p_cons 9.754507e-02   p_joint 4.159624e-04

Joint ci ratio: 1.312976e-01	ci left: 3.890152e-04	ci right 4.441271e-04	k: 890	n:2140000
Cons ci ratio: 8.151446e-03	ci left: 9.712900e-02	ci right 9.792443e-02	k: 208706	n:2140000
KS ci ratio: 1.254475e-01	ci left: 4.274605e-04	ci right 4.851203e-04	k: 975	n:2140000
MLL3   2140000 perm   2784 sec   (769 perm/sec)   p_kst 4.556075e-04   p_cons 9.752617e-02   p_joint 4.158879e-04

Joint ci ratio: 1.310771e-01	ci left: 3.885554e-04	ci right 4.435026e-04	k: 893	n:2150000
Cons ci ratio: 8.133333e-03	ci left: 9.711123e-02	ci right 9.790474e-02	k: 209641	n:2150000
KS ci ratio: 1.251274e-01	ci left: 4.277250e-04	ci right 4.852624e-04	k: 980	n:2150000
MLL3   2150000 perm   2805 sec   (766 perm/sec)   p_kst 4.558140e-04   p_cons 9.750744e-02   p_joint 4.153488e-04

Joint ci ratio: 1.306394e-01	ci left: 3.894433e-04	ci right 4.443179e-04	k: 899	n:2160000
Cons ci ratio: 8.113781e-03	ci left: 9.712736e-02	ci right 9.791909e-02	k: 210649	n:2160000
KS ci ratio: 1.246833e-01	ci left: 4.288843e-04	ci right 4.863577e-04	k: 987	n:2160000
MLL3   2160000 perm   2827 sec   (764 perm/sec)   p_kst 4.569444e-04   p_cons 9.752269e-02   p_joint 4.162037e-04

Joint ci ratio: 1.303501e-01	ci left: 3.894318e-04	ci right 4.441739e-04	k: 903	n:2170000
Cons ci ratio: 8.094984e-03	ci left: 9.713001e-02	ci right 9.791991e-02	k: 211628	n:2170000
KS ci ratio: 1.243063e-01	ci left: 4.295867e-04	ci right 4.869675e-04	k: 993	n:2170000
MLL3   2170000 perm   2848 sec   (762 perm/sec)   p_kst 4.576037e-04   p_cons 9.752442e-02   p_joint 4.161290e-04

Joint ci ratio: 1.302062e-01	ci left: 3.885330e-04	ci right 4.430837e-04	k: 905	n:2180000
Cons ci ratio: 8.076718e-03	ci left: 9.712393e-02	ci right 9.791200e-02	k: 212588	n:2180000
KS ci ratio: 1.242440e-01	ci left: 4.280606e-04	ci right 4.852067e-04	k: 994	n:2180000
MLL3   2180000 perm   2869 sec   (760 perm/sec)   p_kst 4.559633e-04   p_cons 9.751743e-02   p_joint 4.151376e-04

Joint ci ratio: 1.299197e-01	ci left: 3.885259e-04	ci right 4.429464e-04	k: 909	n:2190000
Cons ci ratio: 8.058992e-03	ci left: 9.710880e-02	ci right 9.789501e-02	k: 213528	n:2190000
KS ci ratio: 1.238710e-01	ci left: 4.287607e-04	ci right 4.858158e-04	k: 1000	n:2190000
MLL3   2190000 perm   2890 sec   (758 perm/sec)   p_kst 4.566210e-04   p_cons 9.750137e-02   p_joint 4.150685e-04

Joint ci ratio: 1.296351e-01	ci left: 3.885190e-04	ci right 4.428101e-04	k: 913	n:2200000
Cons ci ratio: 8.041466e-03	ci left: 9.709199e-02	ci right 9.787634e-02	k: 214464	n:2200000
KS ci ratio: 1.237475e-01	ci left: 4.276927e-04	ci right 4.845448e-04	k: 1002	n:2200000
MLL3   2200000 perm   2912 sec   (756 perm/sec)   p_kst 4.554545e-04   p_cons 9.748364e-02   p_joint 4.150000e-04

Joint ci ratio: 1.293524e-01	ci left: 3.885123e-04	ci right 4.426750e-04	k: 917	n:2210000
Cons ci ratio: 8.023661e-03	ci left: 9.708392e-02	ci right 9.786646e-02	k: 215419	n:2210000
KS ci ratio: 1.235629e-01	ci left: 4.270729e-04	ci right 4.837517e-04	k: 1005	n:2210000
MLL3   2210000 perm   2934 sec   (753 perm/sec)   p_kst 4.547511e-04   p_cons 9.747466e-02   p_joint 4.149321e-04

Joint ci ratio: 1.289317e-01	ci left: 3.893777e-04	ci right 4.434710e-04	k: 923	n:2220000
Cons ci ratio: 8.007573e-03	ci left: 9.704085e-02	ci right 9.782147e-02	k: 216296	n:2220000
KS ci ratio: 1.233791e-01	ci left: 4.264588e-04	ci right 4.829657e-04	k: 1008	n:2220000
MLL3   2220000 perm   2955 sec   (751 perm/sec)   p_kst 4.540541e-04   p_cons 9.743063e-02   p_joint 4.157658e-04

Joint ci ratio: 1.286535e-01	ci left: 3.893675e-04	ci right 4.433338e-04	k: 927	n:2230000
Cons ci ratio: 7.989666e-03	ci left: 9.704024e-02	ci right 9.781910e-02	k: 217267	n:2230000
KS ci ratio: 1.230745e-01	ci left: 4.267194e-04	ci right 4.831112e-04	k: 1013	n:2230000
MLL3   2230000 perm   2978 sec   (749 perm/sec)   p_kst 4.542601e-04   p_cons 9.742915e-02   p_joint 4.156951e-04

Joint ci ratio: 1.285843e-01	ci left: 3.880613e-04	ci right 4.418154e-04	k: 928	n:2240000
Cons ci ratio: 7.972466e-03	ci left: 9.702672e-02	ci right 9.780379e-02	k: 218209	n:2240000
KS ci ratio: 1.228929e-01	ci left: 4.261125e-04	ci right 4.823349e-04	k: 1016	n:2240000
MLL3   2240000 perm   3000 sec   (747 perm/sec)   p_kst 4.535714e-04   p_cons 9.741473e-02   p_joint 4.142857e-04

Joint ci ratio: 1.283084e-01	ci left: 3.880573e-04	ci right 4.416867e-04	k: 932	n:2250000
Cons ci ratio: 7.955296e-03	ci left: 9.701509e-02	ci right 9.779039e-02	k: 219155	n:2250000
KS ci ratio: 1.225919e-01	ci left: 4.263727e-04	ci right 4.824816e-04	k: 1021	n:2250000
MLL3   2250000 perm   3022 sec   (745 perm/sec)   p_kst 4.537778e-04   p_cons 9.740222e-02   p_joint 4.142222e-04

Joint ci ratio: 1.285846e-01	ci left: 3.846271e-04	ci right 4.379056e-04	k: 928	n:2260000
Cons ci ratio: 7.936958e-03	ci left: 9.703184e-02	ci right 9.780547e-02	k: 220165	n:2260000
KS ci ratio: 1.224124e-01	ci left: 4.257728e-04	ci right 4.817149e-04	k: 1024	n:2260000
MLL3   2260000 perm   3044 sec   (742 perm/sec)   p_kst 4.530973e-04   p_cons 9.741814e-02   p_joint 4.106195e-04

Joint ci ratio: 1.284464e-01	ci left: 3.837854e-04	ci right 4.368859e-04	k: 930	n:2270000
Cons ci ratio: 7.919023e-03	ci left: 9.704229e-02	ci right 9.781425e-02	k: 221161	n:2270000
KS ci ratio: 1.222337e-01	ci left: 4.251783e-04	ci right 4.809548e-04	k: 1027	n:2270000
MLL3   2270000 perm   3066 sec   (740 perm/sec)   p_kst 4.524229e-04   p_cons 9.742775e-02   p_joint 4.096916e-04

Joint ci ratio: 1.281714e-01	ci left: 3.838002e-04	ci right 4.367804e-04	k: 934	n:2280000
Cons ci ratio: 7.902511e-03	ci left: 9.702375e-02	ci right 9.779394e-02	k: 222091	n:2280000
KS ci ratio: 1.218785e-01	ci left: 4.258647e-04	ci right 4.815572e-04	k: 1033	n:2280000
MLL3   2280000 perm   3088 sec   (738 perm/sec)   p_kst 4.530702e-04   p_cons 9.740833e-02   p_joint 4.096491e-04

Joint ci ratio: 1.283777e-01	ci left: 3.808562e-04	ci right 4.335210e-04	k: 931	n:2290000
Cons ci ratio: 7.885846e-03	ci left: 9.701104e-02	ci right 9.777950e-02	k: 223034	n:2290000
KS ci ratio: 1.216435e-01	ci left: 4.256986e-04	ci right 4.812542e-04	k: 1037	n:2290000
MLL3   2290000 perm   3111 sec   (736 perm/sec)   p_kst 4.528384e-04   p_cons 9.739476e-02   p_joint 4.065502e-04

Joint ci ratio: 1.281716e-01	ci left: 3.804628e-04	ci right 4.329823e-04	k: 934	n:2300000
Cons ci ratio: 7.868431e-03	ci left: 9.701754e-02	ci right 9.778435e-02	k: 224021	n:2300000
KS ci ratio: 1.215850e-01	ci left: 4.242692e-04	ci right 4.796099e-04	k: 1038	n:2300000
MLL3   2300000 perm   3133 sec   (734 perm/sec)   p_kst 4.513043e-04   p_cons 9.740043e-02   p_joint 4.060870e-04

Joint ci ratio: 1.276267e-01	ci left: 3.821682e-04	ci right 4.346819e-04	k: 942	n:2310000
Cons ci ratio: 7.852657e-03	ci left: 9.698984e-02	ci right 9.775489e-02	k: 224929	n:2310000
KS ci ratio: 1.212935e-01	ci left: 4.245313e-04	ci right 4.797638e-04	k: 1043	n:2310000
MLL3   2310000 perm   3156 sec   (732 perm/sec)   p_kst 4.515152e-04   p_cons 9.737186e-02   p_joint 4.077922e-04

Joint ci ratio: 1.288631e-01	ci left: 3.730111e-04	ci right 4.248010e-04	k: 924	n:2320000
Cons ci ratio: 7.835133e-03	ci left: 9.700370e-02	ci right 9.776714e-02	k: 225933	n:2320000
KS ci ratio: 1.210041e-01	ci left: 4.247913e-04	ci right 4.799163e-04	k: 1048	n:2320000
MLL3   2320000 perm   3179 sec   (730 perm/sec)   p_kst 4.517241e-04   p_cons 9.738491e-02   p_joint 3.982759e-04

Joint ci ratio: 1.285162e-01	ci left: 3.734870e-04	ci right 4.251928e-04	k: 929	n:2330000
Cons ci ratio: 7.819005e-03	ci left: 9.698873e-02	ci right 9.775047e-02	k: 226870	n:2330000
KS ci ratio: 1.208315e-01	ci left: 4.242168e-04	ci right 4.791831e-04	k: 1051	n:2330000
MLL3   2330000 perm   3202 sec   (728 perm/sec)   p_kst 4.510730e-04   p_cons 9.736910e-02   p_joint 3.987124e-04

Joint ci ratio: 1.283094e-01	ci left: 3.731318e-04	ci right 4.246989e-04	k: 932	n:2340000
Cons ci ratio: 7.802559e-03	ci left: 9.698327e-02	ci right 9.774337e-02	k: 227829	n:2340000
KS ci ratio: 1.204883e-01	ci left: 4.248906e-04	ci right 4.797768e-04	k: 1057	n:2340000
MLL3   2340000 perm   3224 sec   (726 perm/sec)   p_kst 4.517094e-04   p_cons 9.736282e-02   p_joint 3.982906e-04

Joint ci ratio: 1.278307e-01	ci left: 3.744273e-04	ci right 4.259658e-04	k: 939	n:2350000
Cons ci ratio: 7.786725e-03	ci left: 9.696640e-02	ci right 9.772481e-02	k: 228761	n:2350000
KS ci ratio: 1.200353e-01	ci left: 4.263844e-04	ci right 4.812417e-04	k: 1065	n:2350000
MLL3   2350000 perm   3247 sec   (724 perm/sec)   p_kst 4.531915e-04   p_cons 9.734511e-02   p_joint 3.995745e-04

Joint ci ratio: 1.276272e-01	ci left: 3.740713e-04	ci right 4.254726e-04	k: 942	n:2360000
Cons ci ratio: 7.770087e-03	ci left: 9.696997e-02	ci right 9.772678e-02	k: 229741	n:2360000
KS ci ratio: 1.197547e-01	ci left: 4.266328e-04	ci right 4.813847e-04	k: 1070	n:2360000
MLL3   2360000 perm   3270 sec   (722 perm/sec)   p_kst 4.533898e-04   p_cons 9.734788e-02   p_joint 3.991525e-04

Joint ci ratio: 1.300648e-01	ci left: 3.582008e-04	ci right 4.084340e-04	k: 907	n:2370000
Cons ci ratio: 7.754003e-03	ci left: 9.696340e-02	ci right 9.771859e-02	k: 230697	n:2370000
KS ci ratio: 1.194762e-01	ci left: 4.268793e-04	ci right 4.815264e-04	k: 1075	n:2370000
MLL3   2370000 perm   3293 sec   (720 perm/sec)   p_kst 4.535865e-04   p_cons 9.734051e-02   p_joint 3.827004e-04

Joint ci ratio: 1.312267e-01	ci left: 3.501927e-04	ci right 3.997757e-04	k: 891	n:2380000
Cons ci ratio: 7.738295e-03	ci left: 9.695060e-02	ci right 9.770416e-02	k: 231638	n:2380000
KS ci ratio: 1.190893e-01	ci left: 4.279391e-04	ci right 4.825320e-04	k: 1082	n:2380000
MLL3   2380000 perm   3316 sec   (718 perm/sec)   p_kst 4.546218e-04   p_cons 9.732689e-02   p_joint 3.743697e-04

Joint ci ratio: 1.320438e-01	ci left: 3.442764e-04	ci right 3.933491e-04	k: 880	n:2390000
Cons ci ratio: 7.721378e-03	ci left: 9.696757e-02	ci right 9.771960e-02	k: 232650	n:2390000
KS ci ratio: 1.188154e-01	ci left: 4.281784e-04	ci right 4.826673e-04	k: 1087	n:2390000
MLL3   2390000 perm   3340 sec   (716 perm/sec)   p_kst 4.548117e-04   p_cons 9.734310e-02   p_joint 3.682008e-04

Joint ci ratio: 1.325718e-01	ci left: 3.400217e-04	ci right 3.886971e-04	k: 873	n:2400000
Cons ci ratio: 7.705155e-03	ci left: 9.697108e-02	ci right 9.772155e-02	k: 233630	n:2400000
KS ci ratio: 1.187064e-01	ci left: 4.272029e-04	ci right 4.815143e-04	k: 1089	n:2400000
MLL3   2400000 perm   3363 sec   (714 perm/sec)   p_kst 4.537500e-04   p_cons 9.734583e-02   p_joint 3.637500e-04

Joint ci ratio: 1.322695e-01	ci left: 3.402156e-04	ci right 3.887989e-04	k: 877	n:2410000
Cons ci ratio: 7.689251e-03	ci left: 9.696960e-02	ci right 9.771850e-02	k: 234598	n:2410000
KS ci ratio: 1.185434e-01	ci left: 4.266381e-04	ci right 4.807981e-04	k: 1092	n:2410000
MLL3   2410000 perm   3387 sec   (712 perm/sec)   p_kst 4.531120e-04   p_cons 9.734357e-02   p_joint 3.639004e-04

Joint ci ratio: 1.321943e-01	ci left: 3.392093e-04	ci right 3.876192e-04	k: 878	n:2420000
Cons ci ratio: 7.673248e-03	ci left: 9.697267e-02	ci right 9.772003e-02	k: 235577	n:2420000
KS ci ratio: 1.183271e-01	ci left: 4.264791e-04	ci right 4.805131e-04	k: 1096	n:2420000
MLL3   2420000 perm   3410 sec   (710 perm/sec)   p_kst 4.528926e-04   p_cons 9.734587e-02   p_joint 3.628099e-04

Joint ci ratio: 1.324206e-01	ci left: 3.366197e-04	ci right 3.847487e-04	k: 875	n:2430000
Cons ci ratio: 7.658635e-03	ci left: 9.694614e-02	ci right 9.769186e-02	k: 236484	n:2430000
KS ci ratio: 1.181120e-01	ci left: 4.263214e-04	ci right 4.802305e-04	k: 1100	n:2430000
MLL3   2430000 perm   3434 sec   (708 perm/sec)   p_kst 4.526749e-04   p_cons 9.731852e-02   p_joint 3.600823e-04

Joint ci ratio: 1.321193e-01	ci left: 3.368252e-04	ci right 3.848654e-04	k: 879	n:2440000
Cons ci ratio: 7.642982e-03	ci left: 9.694560e-02	ci right 9.768979e-02	k: 237454	n:2440000
KS ci ratio: 1.176851e-01	ci left: 4.277562e-04	ci right 4.816376e-04	k: 1108	n:2440000
MLL3   2440000 perm   3457 sec   (706 perm/sec)   p_kst 4.540984e-04   p_cons 9.731721e-02   p_joint 3.602459e-04

Joint ci ratio: 1.324965e-01	ci left: 3.334771e-04	ci right 3.811863e-04	k: 874	n:2450000
Cons ci ratio: 7.627265e-03	ci left: 9.694873e-02	ci right 9.769141e-02	k: 238433	n:2450000
KS ci ratio: 1.173680e-01	ci left: 4.283873e-04	ci right 4.821927e-04	k: 1114	n:2450000
MLL3   2450000 perm   3481 sec   (704 perm/sec)   p_kst 4.546939e-04   p_cons 9.731959e-02   p_joint 3.567347e-04

Joint ci ratio: 1.322700e-01	ci left: 3.333006e-04	ci right 3.808966e-04	k: 877	n:2460000
Cons ci ratio: 7.612014e-03	ci left: 9.694332e-02	ci right 9.768446e-02	k: 239391	n:2460000
KS ci ratio: 1.170012e-01	ci left: 4.294080e-04	ci right 4.831614e-04	k: 1121	n:2460000
MLL3   2460000 perm   3505 sec   (702 perm/sec)   p_kst 4.556911e-04   p_cons 9.731341e-02   p_joint 3.565041e-04

Joint ci ratio: 1.320446e-01	ci left: 3.331256e-04	ci right 3.806092e-04	k: 880	n:2470000
Cons ci ratio: 7.595612e-03	ci left: 9.696664e-02	ci right 9.770636e-02	k: 240420	n:2470000
KS ci ratio: 1.168452e-01	ci left: 4.288486e-04	ci right 4.824554e-04	k: 1124	n:2470000
MLL3   2470000 perm   3528 sec   (700 perm/sec)   p_kst 4.550607e-04   p_cons 9.733603e-02   p_joint 3.562753e-04

Joint ci ratio: 1.318950e-01	ci left: 3.325622e-04	ci right 3.799076e-04	k: 882	n:2480000
Cons ci ratio: 7.580585e-03	ci left: 9.696040e-02	ci right 9.769860e-02	k: 241376	n:2480000
KS ci ratio: 1.166380e-01	ci left: 4.286851e-04	ci right 4.821700e-04	k: 1128	n:2480000
MLL3   2480000 perm   3552 sec   (698 perm/sec)   p_kst 4.548387e-04   p_cons 9.732903e-02   p_joint 3.556452e-04

Joint ci ratio: 1.316715e-01	ci left: 3.323917e-04	ci right 3.796264e-04	k: 885	n:2490000
Cons ci ratio: 7.564937e-03	ci left: 9.697065e-02	ci right 9.770740e-02	k: 242373	n:2490000
KS ci ratio: 1.164320e-01	ci left: 4.285231e-04	ci right 4.818868e-04	k: 1132	n:2490000
MLL3   2490000 perm   3576 sec   (696 perm/sec)   p_kst 4.546185e-04   p_cons 9.733855e-02   p_joint 3.554217e-04

Joint ci ratio: 1.312279e-01	ci left: 3.333832e-04	ci right 3.805867e-04	k: 891	n:2500000
Cons ci ratio: 7.550143e-03	ci left: 9.696324e-02	ci right 9.769849e-02	k: 243326	n:2500000
KS ci ratio: 1.162270e-01	ci left: 4.283625e-04	ci right 4.816058e-04	k: 1136	n:2500000
MLL3   2500000 perm   3600 sec   (694 perm/sec)   p_kst 4.544000e-04   p_cons 9.733040e-02   p_joint 3.564000e-04

Joint ci ratio: 1.310078e-01	ci left: 3.332110e-04	ci right 3.803048e-04	k: 894	n:2510000
Cons ci ratio: 7.534529e-03	ci left: 9.697698e-02	ci right 9.771080e-02	k: 244332	n:2510000
KS ci ratio: 1.162271e-01	ci left: 4.266558e-04	ci right 4.796871e-04	k: 1136	n:2510000
MLL3   2510000 perm   3624 sec   (693 perm/sec)   p_kst 4.525896e-04   p_cons 9.734343e-02   p_joint 3.561753e-04

Joint ci ratio: 1.306433e-01	ci left: 3.338080e-04	ci right 3.808447e-04	k: 899	n:2520000
Cons ci ratio: 7.519725e-03	ci left: 9.697397e-02	ci right 9.770632e-02	k: 245296	n:2520000
KS ci ratio: 1.159216e-01	ci left: 4.272746e-04	ci right 4.802336e-04	k: 1142	n:2520000
MLL3   2520000 perm   3648 sec   (691 perm/sec)   p_kst 4.531746e-04   p_cons 9.733968e-02   p_joint 3.567460e-04

Joint ci ratio: 1.300664e-01	ci left: 3.355475e-04	ci right 3.826045e-04	k: 907	n:2530000
Cons ci ratio: 7.505126e-03	ci left: 9.696822e-02	ci right 9.769910e-02	k: 246253	n:2530000
KS ci ratio: 1.155180e-01	ci left: 4.286563e-04	ci right 4.815890e-04	k: 1150	n:2530000
MLL3   2530000 perm   3672 sec   (689 perm/sec)   p_kst 4.545455e-04   p_cons 9.733320e-02   p_joint 3.584980e-04

Joint ci ratio: 1.299949e-01	ci left: 3.346073e-04	ci right 3.815047e-04	k: 908	n:2540000
Cons ci ratio: 7.490377e-03	ci left: 9.696802e-02	ci right 9.769746e-02	k: 247224	n:2540000
KS ci ratio: 1.154178e-01	ci left: 4.277333e-04	ci right 4.805031e-04	k: 1152	n:2540000
MLL3   2540000 perm   3697 sec   (687 perm/sec)   p_kst 4.535433e-04   p_cons 9.733228e-02   p_joint 3.574803e-04

Joint ci ratio: 1.295679e-01	ci left: 3.355717e-04	ci right 3.824379e-04	k: 914	n:2550000
Cons ci ratio: 7.475964e-03	ci left: 9.696196e-02	ci right 9.768994e-02	k: 248180	n:2550000
KS ci ratio: 1.153179e-01	ci left: 4.268176e-04	ci right 4.794257e-04	k: 1154	n:2550000
MLL3   2550000 perm   3721 sec   (685 perm/sec)   p_kst 4.525490e-04   p_cons 9.732549e-02   p_joint 3.584314e-04

Joint ci ratio: 1.294972e-01	ci left: 3.346389e-04	ci right 3.813473e-04	k: 915	n:2560000
Cons ci ratio: 7.461718e-03	ci left: 9.695399e-02	ci right 9.768052e-02	k: 249131	n:2560000
KS ci ratio: 1.151684e-01	ci left: 4.262884e-04	ci right 4.787586e-04	k: 1157	n:2560000
MLL3   2560000 perm   3746 sec   (683 perm/sec)   p_kst 4.519531e-04   p_cons 9.731680e-02   p_joint 3.574219e-04

Joint ci ratio: 1.304988e-01	ci left: 3.280664e-04	ci right 3.742390e-04	k: 901	n:2570000
Cons ci ratio: 7.447388e-03	ci left: 9.694997e-02	ci right 9.767507e-02	k: 250092	n:2570000
KS ci ratio: 1.150196e-01	ci left: 4.257634e-04	ci right 4.780966e-04	k: 1160	n:2570000
MLL3   2570000 perm   3770 sec   (682 perm/sec)   p_kst 4.513619e-04   p_cons 9.731206e-02   p_joint 3.505837e-04

Joint ci ratio: 1.303544e-01	ci left: 3.275447e-04	ci right 3.735889e-04	k: 903	n:2580000
Cons ci ratio: 7.432910e-03	ci left: 9.695140e-02	ci right 9.767509e-02	k: 251067	n:2580000
KS ci ratio: 1.149207e-01	ci left: 4.248661e-04	ci right 4.770410e-04	k: 1162	n:2580000
MLL3   2580000 perm   3795 sec   (680 perm/sec)   p_kst 4.503876e-04   p_cons 9.731279e-02   p_joint 3.500000e-04

Joint ci ratio: 1.299953e-01	ci left: 3.281477e-04	ci right 3.741398e-04	k: 908	n:2590000
Cons ci ratio: 7.418500e-03	ci left: 9.695320e-02	ci right 9.767550e-02	k: 252043	n:2590000
KS ci ratio: 1.146744e-01	ci left: 4.251007e-04	ci right 4.771851e-04	k: 1167	n:2590000
MLL3   2590000 perm   3819 sec   (678 perm/sec)   p_kst 4.505792e-04   p_cons 9.731390e-02   p_joint 3.505792e-04

Joint ci ratio: 1.297814e-01	ci left: 3.280019e-04	ci right 3.738921e-04	k: 911	n:2600000
Cons ci ratio: 7.404449e-03	ci left: 9.694847e-02	ci right 9.766935e-02	k: 253002	n:2600000
KS ci ratio: 1.144786e-01	ci left: 4.249601e-04	ci right 4.769323e-04	k: 1171	n:2600000
MLL3   2600000 perm   3844 sec   (676 perm/sec)   p_kst 4.503846e-04   p_cons 9.730846e-02   p_joint 3.503846e-04

Joint ci ratio: 1.294270e-01	ci left: 3.285988e-04	ci right 3.744374e-04	k: 916	n:2610000
Cons ci ratio: 7.390446e-03	ci left: 9.694453e-02	ci right 9.766402e-02	k: 253963	n:2610000
KS ci ratio: 1.142352e-01	ci left: 4.251928e-04	ci right 4.770754e-04	k: 1176	n:2610000
MLL3   2610000 perm   3869 sec   (675 perm/sec)   p_kst 4.505747e-04   p_cons 9.730383e-02   p_joint 3.509579e-04

Joint ci ratio: 1.293566e-01	ci left: 3.277139e-04	ci right 3.734023e-04	k: 917	n:2620000
Cons ci ratio: 7.376441e-03	ci left: 9.694254e-02	ci right 9.766064e-02	k: 254929	n:2620000
KS ci ratio: 1.141383e-01	ci left: 4.243115e-04	ci right 4.760397e-04	k: 1178	n:2620000
MLL3   2620000 perm   3894 sec   (673 perm/sec)   p_kst 4.496183e-04   p_cons 9.730115e-02   p_joint 3.500000e-04

Joint ci ratio: 1.290757e-01	ci left: 3.279396e-04	ci right 3.735525e-04	k: 921	n:2630000
Cons ci ratio: 7.362388e-03	ci left: 9.694359e-02	ci right 9.766033e-02	k: 255903	n:2630000
KS ci ratio: 1.139452e-01	ci left: 4.241757e-04	ci right 4.757940e-04	k: 1182	n:2630000
MLL3   2630000 perm   3919 sec   (671 perm/sec)   p_kst 4.494297e-04   p_cons 9.730152e-02   p_joint 3.501901e-04

Joint ci ratio: 1.286577e-01	ci left: 3.288969e-04	ci right 3.744835e-04	k: 927	n:2640000
Cons ci ratio: 7.348701e-03	ci left: 9.693784e-02	ci right 9.765320e-02	k: 256859	n:2640000
KS ci ratio: 1.138971e-01	ci left: 4.229369e-04	ci right 4.743813e-04	k: 1183	n:2640000
MLL3   2640000 perm   3945 sec   (669 perm/sec)   p_kst 4.481061e-04   p_cons 9.729508e-02   p_joint 3.511364e-04

Joint ci ratio: 1.283813e-01	ci left: 3.291167e-04	ci right 3.746283e-04	k: 931	n:2650000
Cons ci ratio: 7.334822e-03	ci left: 9.693853e-02	ci right 9.765254e-02	k: 257832	n:2650000
KS ci ratio: 1.138491e-01	ci left: 4.217075e-04	ci right 4.729793e-04	k: 1184	n:2650000
MLL3   2650000 perm   3971 sec   (667 perm/sec)   p_kst 4.467925e-04   p_cons 9.729509e-02   p_joint 3.513208e-04

Joint ci ratio: 1.281752e-01	ci left: 3.289710e-04	ci right 3.743839e-04	k: 934	n:2660000
Cons ci ratio: 7.320848e-03	ci left: 9.694335e-02	ci right 9.765603e-02	k: 258816	n:2660000
KS ci ratio: 1.136575e-01	ci left: 4.215831e-04	ci right 4.727477e-04	k: 1188	n:2660000
MLL3   2660000 perm   3997 sec   (666 perm/sec)   p_kst 4.466165e-04   p_cons 9.729925e-02   p_joint 3.511278e-04

Joint ci ratio: 1.283814e-01	ci left: 3.266514e-04	ci right 3.718221e-04	k: 931	n:2670000
Cons ci ratio: 7.307625e-03	ci left: 9.693205e-02	ci right 9.764335e-02	k: 259757	n:2670000
KS ci ratio: 1.135620e-01	ci left: 4.207319e-04	ci right 4.717475e-04	k: 1190	n:2670000
MLL3   2670000 perm   4023 sec   (664 perm/sec)   p_kst 4.456929e-04   p_cons 9.728727e-02   p_joint 3.486891e-04

Joint ci ratio: 1.282439e-01	ci left: 3.261548e-04	ci right 3.712049e-04	k: 933	n:2680000
Cons ci ratio: 7.294534e-03	ci left: 9.691935e-02	ci right 9.762928e-02	k: 260694	n:2680000
KS ci ratio: 1.134193e-01	ci left: 4.202497e-04	ci right 4.711384e-04	k: 1193	n:2680000
MLL3   2680000 perm   4048 sec   (662 perm/sec)   p_kst 4.451493e-04   p_cons 9.727388e-02   p_joint 3.481343e-04

Joint ci ratio: 1.317477e-01	ci left: 3.073188e-04	ci right 3.510177e-04	k: 884	n:2690000
Cons ci ratio: 7.281360e-03	ci left: 9.691046e-02	ci right 9.761903e-02	k: 261641	n:2690000
KS ci ratio: 1.129942e-01	ci left: 4.219384e-04	ci right 4.728273e-04	k: 1202	n:2690000
MLL3   2690000 perm   4074 sec   (660 perm/sec)   p_kst 4.468401e-04   p_cons 9.726431e-02   p_joint 3.286245e-04

Joint ci ratio: 1.334170e-01	ci left: 2.983026e-04	ci right 3.412995e-04	k: 862	n:2700000
Cons ci ratio: 7.267904e-03	ci left: 9.691014e-02	ci right 9.761740e-02	k: 262611	n:2700000
KS ci ratio: 1.129004e-01	ci left: 4.210955e-04	ci right 4.718378e-04	k: 1204	n:2700000
MLL3   2700000 perm   4100 sec   (659 perm/sec)   p_kst 4.459259e-04   p_cons 9.726333e-02   p_joint 3.192593e-04

Joint ci ratio: 1.332627e-01	ci left: 2.979152e-04	ci right 3.408027e-04	k: 864	n:2710000
Cons ci ratio: 7.254644e-03	ci left: 9.690687e-02	ci right 9.761281e-02	k: 263573	n:2710000
KS ci ratio: 1.126203e-01	ci left: 4.216932e-04	ci right 4.723731e-04	k: 1210	n:2710000
MLL3   2710000 perm   4126 sec   (657 perm/sec)   p_kst 4.464945e-04   p_cons 9.725941e-02   p_joint 3.188192e-04

Joint ci ratio: 1.331858e-01	ci left: 2.971753e-04	ci right 3.399297e-04	k: 865	n:2720000
Cons ci ratio: 7.240775e-03	ci left: 9.692015e-02	ci right 9.762483e-02	k: 264580	n:2720000
KS ci ratio: 1.124811e-01	ci left: 4.212147e-04	ci right 4.717705e-04	k: 1213	n:2720000
MLL3   2720000 perm   4152 sec   (655 perm/sec)   p_kst 4.459559e-04   p_cons 9.727206e-02   p_joint 3.180147e-04

Joint ci ratio: 1.329557e-01	ci left: 2.971491e-04	ci right 3.398200e-04	k: 868	n:2730000
Cons ci ratio: 7.228009e-03	ci left: 9.690846e-02	ci right 9.761181e-02	k: 265519	n:2730000
KS ci ratio: 1.122963e-01	ci left: 4.210958e-04	ci right 4.715487e-04	k: 1217	n:2730000
MLL3   2730000 perm   4177 sec   (654 perm/sec)   p_kst 4.457875e-04   p_cons 9.725971e-02   p_joint 3.179487e-04

Joint ci ratio: 1.331859e-01	ci left: 2.950062e-04	ci right 3.374485e-04	k: 865	n:2740000
Cons ci ratio: 7.214937e-03	ci left: 9.690597e-02	ci right 9.760802e-02	k: 266483	n:2740000
KS ci ratio: 1.119749e-01	ci left: 4.220421e-04	ci right 4.724541e-04	k: 1224	n:2740000
MLL3   2740000 perm   4203 sec   (652 perm/sec)   p_kst 4.467153e-04   p_cons 9.725657e-02   p_joint 3.156934e-04

Joint ci ratio: 1.329559e-01	ci left: 2.949880e-04	ci right 3.373486e-04	k: 868	n:2750000
Cons ci ratio: 7.202262e-03	ci left: 9.689551e-02	ci right 9.759625e-02	k: 267425	n:2750000
KS ci ratio: 1.118837e-01	ci left: 4.212143e-04	ci right 4.714837e-04	k: 1226	n:2750000
MLL3   2750000 perm   4229 sec   (650 perm/sec)   p_kst 4.458182e-04   p_cons 9.724545e-02   p_joint 3.156364e-04

Joint ci ratio: 1.324992e-01	ci left: 2.960209e-04	ci right 3.383723e-04	k: 874	n:2760000
Cons ci ratio: 7.189269e-03	ci left: 9.689453e-02	ci right 9.759399e-02	k: 268393	n:2760000
KS ci ratio: 1.117018e-01	ci left: 4.210969e-04	ci right 4.712652e-04	k: 1230	n:2760000
MLL3   2760000 perm   4255 sec   (649 perm/sec)   p_kst 4.456522e-04   p_cons 9.724384e-02   p_joint 3.166667e-04

Joint ci ratio: 1.333403e-01	ci left: 2.911132e-04	ci right 3.330477e-04	k: 863	n:2770000
Cons ci ratio: 7.176818e-03	ci left: 9.688203e-02	ci right 9.758019e-02	k: 269329	n:2770000
KS ci ratio: 1.114756e-01	ci left: 4.213314e-04	ci right 4.714193e-04	k: 1235	n:2770000
MLL3   2770000 perm   4280 sec   (647 perm/sec)   p_kst 4.458484e-04   p_cons 9.723069e-02   p_joint 3.115523e-04

Joint ci ratio: 1.328796e-01	ci left: 2.921524e-04	ci right 3.340798e-04	k: 869	n:2780000
Cons ci ratio: 7.163977e-03	ci left: 9.688075e-02	ci right 9.757764e-02	k: 270296	n:2780000
KS ci ratio: 1.108938e-01	ci left: 4.243621e-04	ci right 4.745298e-04	k: 1248	n:2780000
MLL3   2780000 perm   4306 sec   (646 perm/sec)   p_kst 4.489209e-04   p_cons 9.722878e-02   p_joint 3.125899e-04

Joint ci ratio: 1.330327e-01	ci left: 2.904122e-04	ci right 3.321417e-04	k: 867	n:2790000
Cons ci ratio: 7.151145e-03	ci left: 9.688091e-02	ci right 9.757655e-02	k: 271267	n:2790000
KS ci ratio: 1.105403e-01	ci left: 4.256290e-04	ci right 4.757757e-04	k: 1256	n:2790000
MLL3   2790000 perm   4332 sec   (644 perm/sec)   p_kst 4.501792e-04   p_cons 9.722832e-02   p_joint 3.107527e-04

Joint ci ratio: 1.329562e-01	ci left: 2.897203e-04	ci right 3.313246e-04	k: 868	n:2800000
Cons ci ratio: 7.138354e-03	ci left: 9.688179e-02	ci right 9.757619e-02	k: 272240	n:2800000
KS ci ratio: 1.104525e-01	ci left: 4.248035e-04	ci right 4.748105e-04	k: 1258	n:2800000
MLL3   2800000 perm   4358 sec   (642 perm/sec)   p_kst 4.492857e-04   p_cons 9.722857e-02   p_joint 3.100000e-04

Joint ci ratio: 1.327273e-01	ci left: 2.897214e-04	ci right 3.312485e-04	k: 871	n:2810000
Cons ci ratio: 7.125038e-03	ci left: 9.689723e-02	ci right 9.759044e-02	k: 273254	n:2810000
KS ci ratio: 1.102774e-01	ci left: 4.246759e-04	ci right 4.745836e-04	k: 1262	n:2810000
MLL3   2810000 perm   4385 sec   (641 perm/sec)   p_kst 4.491103e-04   p_cons 9.724342e-02   p_joint 3.099644e-04

Joint ci ratio: 1.324239e-01	ci left: 2.900654e-04	ci right 3.315393e-04	k: 875	n:2820000
Cons ci ratio: 7.112501e-03	ci left: 9.689521e-02	ci right 9.758718e-02	k: 274219	n:2820000
KS ci ratio: 1.102339e-01	ci left: 4.235148e-04	ci right 4.732651e-04	k: 1263	n:2820000
MLL3   2820000 perm   4411 sec   (639 perm/sec)   p_kst 4.478723e-04   p_cons 9.724078e-02   p_joint 3.102837e-04

Joint ci ratio: 1.319727e-01	ci left: 2.910905e-04	ci right 3.325580e-04	k: 881	n:2830000
Cons ci ratio: 7.099715e-03	ci left: 9.690097e-02	ci right 9.759173e-02	k: 275206	n:2830000
KS ci ratio: 1.099731e-01	ci left: 4.240800e-04	ci right 4.737712e-04	k: 1269	n:2830000
MLL3   2830000 perm   4437 sec   (638 perm/sec)   p_kst 4.484099e-04   p_cons 9.724594e-02   p_joint 3.113074e-04

Joint ci ratio: 1.316001e-01	ci left: 2.917681e-04	ci right 3.332056e-04	k: 886	n:2840000
Cons ci ratio: 7.087737e-03	ci left: 9.688841e-02	ci right 9.757791e-02	k: 276141	n:2840000
KS ci ratio: 1.096283e-01	ci left: 4.253263e-04	ci right 4.749972e-04	k: 1277	n:2840000
MLL3   2840000 perm   4464 sec   (636 perm/sec)   p_kst 4.496479e-04   p_cons 9.723275e-02   p_joint 3.119718e-04

Joint ci ratio: 1.315261e-01	ci left: 2.910836e-04	ci right 3.323989e-04	k: 887	n:2850000
Cons ci ratio: 7.075635e-03	ci left: 9.688049e-02	ci right 9.756875e-02	k: 277089	n:2850000
KS ci ratio: 1.093719e-01	ci left: 4.258816e-04	ci right 4.754935e-04	k: 1283	n:2850000
MLL3   2850000 perm   4491 sec   (635 perm/sec)   p_kst 4.501754e-04   p_cons 9.722421e-02   p_joint 3.112281e-04

Joint ci ratio: 1.313045e-01	ci left: 2.910803e-04	ci right 3.323201e-04	k: 890	n:2860000
Cons ci ratio: 7.063160e-03	ci left: 9.688345e-02	ci right 9.757051e-02	k: 278068	n:2860000
KS ci ratio: 1.092019e-01	ci left: 4.257529e-04	ci right 4.752677e-04	k: 1287	n:2860000
MLL3   2860000 perm   4518 sec   (633 perm/sec)   p_kst 4.500000e-04   p_cons 9.722657e-02   p_joint 3.111888e-04

Joint ci ratio: 1.309375e-01	ci left: 2.917511e-04	ci right 3.329614e-04	k: 895	n:2870000
Cons ci ratio: 7.050959e-03	ci left: 9.688117e-02	ci right 9.756703e-02	k: 279032	n:2870000
KS ci ratio: 1.087803e-01	ci left: 4.276588e-04	ci right 4.771910e-04	k: 1297	n:2870000
MLL3   2870000 perm   4545 sec   (631 perm/sec)   p_kst 4.519164e-04   p_cons 9.722369e-02   p_joint 3.118467e-04

Joint ci ratio: 1.307189e-01	ci left: 2.917457e-04	ci right 3.328811e-04	k: 898	n:2880000
Cons ci ratio: 7.039101e-03	ci left: 9.687198e-02	ci right 9.755661e-02	k: 279976	n:2880000
KS ci ratio: 1.087385e-01	ci left: 4.265116e-04	ci right 4.758908e-04	k: 1298	n:2880000
MLL3   2880000 perm   4572 sec   (630 perm/sec)   p_kst 4.506944e-04   p_cons 9.721389e-02   p_joint 3.118056e-04

Joint ci ratio: 1.303568e-01	ci left: 2.924098e-04	ci right 3.335158e-04	k: 903	n:2890000
Cons ci ratio: 7.026623e-03	ci left: 9.687978e-02	ci right 9.756325e-02	k: 280969	n:2890000
KS ci ratio: 1.083637e-01	ci left: 4.280654e-04	ci right 4.774428e-04	k: 1307	n:2890000
MLL3   2890000 perm   4599 sec   (628 perm/sec)   p_kst 4.522491e-04   p_cons 9.722111e-02   p_joint 3.124567e-04

Joint ci ratio: 1.298550e-01	ci left: 2.937367e-04	ci right 3.348580e-04	k: 910	n:2900000
Cons ci ratio: 7.014253e-03	ci left: 9.688649e-02	ci right 9.756880e-02	k: 281959	n:2900000
KS ci ratio: 1.081984e-01	ci left: 4.279313e-04	ci right 4.772131e-04	k: 1311	n:2900000
MLL3   2900000 perm   4626 sec   (627 perm/sec)   p_kst 4.520690e-04   p_cons 9.722724e-02   p_joint 3.137931e-04

Joint ci ratio: 1.300694e-01	ci left: 2.917299e-04	ci right 3.326429e-04	k: 907	n:2910000
Cons ci ratio: 7.002262e-03	ci left: 9.688527e-02	ci right 9.756640e-02	k: 282926	n:2910000
KS ci ratio: 1.079109e-01	ci left: 4.288012e-04	ci right 4.780436e-04	k: 1318	n:2910000
MLL3   2910000 perm   4653 sec   (625 perm/sec)   p_kst 4.529210e-04   p_cons 9.722543e-02   p_joint 3.116838e-04

Joint ci ratio: 1.297839e-01	ci left: 2.920562e-04	ci right 3.329181e-04	k: 911	n:2920000
Cons ci ratio: 6.990075e-03	ci left: 9.689055e-02	ci right 9.757053e-02	k: 283912	n:2920000
KS ci ratio: 1.077069e-01	ci left: 4.289989e-04	ci right 4.781650e-04	k: 1323	n:2920000
MLL3   2920000 perm   4680 sec   (624 perm/sec)   p_kst 4.530822e-04   p_cons 9.723014e-02   p_joint 3.119863e-04

Joint ci ratio: 1.297128e-01	ci left: 2.913896e-04	ci right 3.321342e-04	k: 912	n:2930000
Cons ci ratio: 6.978154e-03	ci left: 9.689068e-02	ci right 9.756950e-02	k: 284883	n:2930000
KS ci ratio: 1.076257e-01	ci left: 4.281989e-04	ci right 4.772340e-04	k: 1325	n:2930000
MLL3   2930000 perm   4708 sec   (622 perm/sec)   p_kst 4.522184e-04   p_cons 9.722969e-02   p_joint 3.112628e-04

Joint ci ratio: 1.184399e-01	ci left: 3.503865e-04	ci right 3.948250e-04	k: 1094	n:2940000
Cons ci ratio: 6.966267e-03	ci left: 9.689150e-02	ci right 9.756916e-02	k: 285856	n:2940000
KS ci ratio: 1.071819e-01	ci left: 4.303835e-04	ci right 4.794527e-04	k: 1336	n:2940000
MLL3   2940000 perm   4735 sec   (621 perm/sec)   p_kst 4.544218e-04   p_cons 9.722993e-02   p_joint 3.721088e-04

Joint ci ratio: 1.180631e-01	ci left: 3.515014e-04	ci right 3.959296e-04	k: 1101	n:2950000
Cons ci ratio: 6.954641e-03	ci left: 9.688723e-02	ci right 9.756373e-02	k: 286814	n:2950000
KS ci ratio: 1.069024e-01	ci left: 4.312339e-04	ci right 4.802638e-04	k: 1343	n:2950000
MLL3   2950000 perm   4762 sec   (619 perm/sec)   p_kst 4.552542e-04   p_cons 9.722508e-02   p_joint 3.732203e-04

Joint ci ratio: 1.177961e-01	ci left: 3.519533e-04	ci right 3.963310e-04	k: 1106	n:2960000
Cons ci ratio: 6.942847e-03	ci left: 9.688873e-02	ci right 9.756408e-02	k: 287789	n:2960000
KS ci ratio: 1.067437e-01	ci left: 4.310923e-04	ci right 4.800287e-04	k: 1347	n:2960000
MLL3   2960000 perm   4790 sec   (618 perm/sec)   p_kst 4.550676e-04   p_cons 9.722601e-02   p_joint 3.736486e-04

Joint ci ratio: 1.175310e-01	ci left: 3.524022e-04	ci right 3.967296e-04	k: 1111	n:2970000
Cons ci ratio: 6.930940e-03	ci left: 9.689459e-02	ci right 9.756882e-02	k: 288777	n:2970000
KS ci ratio: 1.065069e-01	ci left: 4.316072e-04	ci right 4.804865e-04	k: 1353	n:2970000
MLL3   2970000 perm   4818 sec   (616 perm/sec)   p_kst 4.555556e-04   p_cons 9.723131e-02   p_joint 3.740741e-04

Joint ci ratio: 1.173201e-01	ci left: 3.525225e-04	ci right 3.967800e-04	k: 1115	n:2980000
Cons ci ratio: 6.919993e-03	ci left: 9.687763e-02	ci right 9.755067e-02	k: 289697	n:2980000
KS ci ratio: 1.063108e-01	ci left: 4.317920e-04	ci right 4.805966e-04	k: 1358	n:2980000
MLL3   2980000 perm   4846 sec   (615 perm/sec)   p_kst 4.557047e-04   p_cons 9.721376e-02   p_joint 3.741611e-04

Joint ci ratio: 1.172152e-01	ci left: 3.519928e-04	ci right 3.961414e-04	k: 1117	n:2990000
Cons ci ratio: 6.907966e-03	ci left: 9.688950e-02	ci right 9.756145e-02	k: 290703	n:2990000
KS ci ratio: 1.063108e-01	ci left: 4.303479e-04	ci right 4.789893e-04	k: 1358	n:2990000
MLL3   2990000 perm   4874 sec   (613 perm/sec)   p_kst 4.541806e-04   p_cons 9.722508e-02   p_joint 3.735786e-04

Joint ci ratio: 1.170061e-01	ci left: 3.521137e-04	ci right 3.961933e-04	k: 1121	n:3000000
Cons ci ratio: 6.896721e-03	ci left: 9.688298e-02	ci right 9.755379e-02	k: 291654	n:3000000
KS ci ratio: 1.061158e-01	ci left: 4.305358e-04	ci right 4.791036e-04	k: 1363	n:3000000
MLL3   3000000 perm   4906 sec   (612 perm/sec)   p_kst 4.543333e-04   p_cons 9.721800e-02   p_joint 3.736667e-04

Joint ci ratio: 1.176902e-01	ci left: 3.467517e-04	ci right 3.904315e-04	k: 1108	n:3010000
Cons ci ratio: 6.884762e-03	ci left: 9.689609e-02	ci right 9.756582e-02	k: 292664	n:3010000
KS ci ratio: 1.060381e-01	ci left: 4.297522e-04	ci right 4.781940e-04	k: 1365	n:3010000
MLL3   3010000 perm   4933 sec   (610 perm/sec)   p_kst 4.534884e-04   p_cons 9.723056e-02   p_joint 3.681063e-04

Joint ci ratio: 1.175842e-01	ci left: 3.462463e-04	ci right 3.898204e-04	k: 1110	n:3020000
Cons ci ratio: 6.873462e-03	ci left: 9.689389e-02	ci right 9.756251e-02	k: 293628	n:3020000
KS ci ratio: 1.059219e-01	ci left: 4.292963e-04	ci right 4.776302e-04	k: 1368	n:3020000
MLL3   3020000 perm   4962 sec   (609 perm/sec)   p_kst 4.529801e-04   p_cons 9.722781e-02   p_joint 3.675497e-04

Joint ci ratio: 1.175314e-01	ci left: 3.454239e-04	ci right 3.888736e-04	k: 1111	n:3030000
Cons ci ratio: 6.861817e-03	ci left: 9.690193e-02	ci right 9.756946e-02	k: 294623	n:3030000
KS ci ratio: 1.058833e-01	ci left: 4.282007e-04	ci right 4.763927e-04	k: 1369	n:3030000
MLL3   3030000 perm   4990 sec   (607 perm/sec)   p_kst 4.518152e-04   p_cons 9.723531e-02   p_joint 3.666667e-04

Joint ci ratio: 1.176373e-01	ci left: 3.436490e-04	ci right 3.869172e-04	k: 1109	n:3040000
Cons ci ratio: 6.850886e-03	ci left: 9.689317e-02	ci right 9.755957e-02	k: 295567	n:3040000
KS ci ratio: 1.057676e-01	ci left: 4.277529e-04	ci right 4.758386e-04	k: 1372	n:3040000
MLL3   3040000 perm   5018 sec   (606 perm/sec)   p_kst 4.513158e-04   p_cons 9.722599e-02   p_joint 3.648026e-04

Joint ci ratio: 1.174787e-01	ci left: 3.434770e-04	ci right 3.866612e-04	k: 1112	n:3050000
Cons ci ratio: 6.839407e-03	ci left: 9.689985e-02	ci right 9.756518e-02	k: 296558	n:3050000
KS ci ratio: 1.056139e-01	ci left: 4.276272e-04	ci right 4.756246e-04	k: 1376	n:3050000
MLL3   3050000 perm   5046 sec   (604 perm/sec)   p_kst 4.511475e-04   p_cons 9.723213e-02   p_joint 3.645902e-04

Joint ci ratio: 1.173733e-01	ci left: 3.429889e-04	ci right 3.860704e-04	k: 1114	n:3060000
Cons ci ratio: 6.828836e-03	ci left: 9.688463e-02	ci right 9.754882e-02	k: 297482	n:3060000
KS ci ratio: 1.055373e-01	ci left: 4.268661e-04	ci right 4.747411e-04	k: 1378	n:3060000
MLL3   3060000 perm   5075 sec   (603 perm/sec)   p_kst 4.503268e-04   p_cons 9.721634e-02   p_joint 3.640523e-04

Joint ci ratio: 1.171634e-01	ci left: 3.431364e-04	ci right 3.861539e-04	k: 1118	n:3070000
Cons ci ratio: 6.817720e-03	ci left: 9.688479e-02	ci right 9.754789e-02	k: 298453	n:3070000
KS ci ratio: 1.052704e-01	ci left: 4.276957e-04	ci right 4.755349e-04	k: 1385	n:3070000
MLL3   3070000 perm   5103 sec   (602 perm/sec)   p_kst 4.511401e-04   p_cons 9.721596e-02   p_joint 3.641694e-04

Joint ci ratio: 1.168505e-01	ci left: 3.439134e-04	ci right 3.869052e-04	k: 1124	n:3080000
Cons ci ratio: 6.805915e-03	ci left: 9.690408e-02	ci right 9.756616e-02	k: 299483	n:3080000
KS ci ratio: 1.051188e-01	ci left: 4.275716e-04	ci right 4.753238e-04	k: 1389	n:3080000
MLL3   3080000 perm   5132 sec   (600 perm/sec)   p_kst 4.509740e-04   p_cons 9.723474e-02   p_joint 3.649351e-04

Joint ci ratio: 1.167468e-01	ci left: 3.434287e-04	ci right 3.863193e-04	k: 1126	n:3090000
Cons ci ratio: 6.794973e-03	ci left: 9.690256e-02	ci right 9.756357e-02	k: 300449	n:3090000
KS ci ratio: 1.050433e-01	ci left: 4.268181e-04	ci right 4.744498e-04	k: 1391	n:3090000
MLL3   3090000 perm   5161 sec   (599 perm/sec)   p_kst 4.501618e-04   p_cons 9.723269e-02   p_joint 3.644013e-04

Joint ci ratio: 1.167468e-01	ci left: 3.423209e-04	ci right 3.850731e-04	k: 1126	n:3100000
Cons ci ratio: 6.784133e-03	ci left: 9.689977e-02	ci right 9.755970e-02	k: 301411	n:3100000
KS ci ratio: 1.050434e-01	ci left: 4.254412e-04	ci right 4.729194e-04	k: 1391	n:3100000
MLL3   3100000 perm   5190 sec   (597 perm/sec)   p_kst 4.487097e-04   p_cons 9.722935e-02   p_joint 3.632258e-04

Joint ci ratio: 1.164372e-01	ci left: 3.430932e-04	ci right 3.858204e-04	k: 1132	n:3110000
Cons ci ratio: 6.772738e-03	ci left: 9.691272e-02	ci right 9.757163e-02	k: 302422	n:3110000
KS ci ratio: 1.048553e-01	ci left: 4.256388e-04	ci right 4.730486e-04	k: 1396	n:3110000
MLL3   3110000 perm   5219 sec   (596 perm/sec)   p_kst 4.488746e-04   p_cons 9.724180e-02   p_joint 3.639871e-04

Joint ci ratio: 1.161301e-01	ci left: 3.438607e-04	ci right 3.865628e-04	k: 1138	n:3120000
Cons ci ratio: 6.761757e-03	ci left: 9.691632e-02	ci right 9.757417e-02	k: 303404	n:3120000
KS ci ratio: 1.046681e-01	ci left: 4.258351e-04	ci right 4.731770e-04	k: 1401	n:3120000
MLL3   3120000 perm   5248 sec   (595 perm/sec)   p_kst 4.490385e-04   p_cons 9.724487e-02   p_joint 3.647436e-04

Joint ci ratio: 1.159775e-01	ci left: 3.436927e-04	ci right 3.863140e-04	k: 1141	n:3130000
Cons ci ratio: 6.750854e-03	ci left: 9.691925e-02	ci right 9.757606e-02	k: 304384	n:3130000
KS ci ratio: 1.044820e-01	ci left: 4.260303e-04	ci right 4.733044e-04	k: 1406	n:3130000
MLL3   3130000 perm   5277 sec   (593 perm/sec)   p_kst 4.492013e-04   p_cons 9.724728e-02   p_joint 3.645367e-04

Joint ci ratio: 1.157749e-01	ci left: 3.438351e-04	ci right 3.863945e-04	k: 1145	n:3140000
Cons ci ratio: 6.740432e-03	ci left: 9.691104e-02	ci right 9.756678e-02	k: 305329	n:3140000
KS ci ratio: 1.042599e-01	ci left: 4.265345e-04	ci right 4.737578e-04	k: 1412	n:3140000
MLL3   3140000 perm   5306 sec   (592 perm/sec)   p_kst 4.496815e-04   p_cons 9.723854e-02   p_joint 3.646497e-04

Joint ci ratio: 1.156237e-01	ci left: 3.436684e-04	ci right 3.861478e-04	k: 1148	n:3150000
Cons ci ratio: 6.729972e-03	ci left: 9.690510e-02	ci right 9.755977e-02	k: 306281	n:3150000
KS ci ratio: 1.040759e-01	ci left: 4.267263e-04	ci right 4.738824e-04	k: 1417	n:3150000
MLL3   3150000 perm   5334 sec   (591 perm/sec)   p_kst 4.498413e-04   p_cons 9.723206e-02   p_joint 3.644444e-04

Joint ci ratio: 1.154229e-01	ci left: 3.438101e-04	ci right 3.862282e-04	k: 1152	n:3160000
Cons ci ratio: 6.719452e-03	ci left: 9.690204e-02	ci right 9.755566e-02	k: 307242	n:3160000
KS ci ratio: 1.040026e-01	ci left: 4.259924e-04	ci right 4.730322e-04	k: 1419	n:3160000
MLL3   3160000 perm   5362 sec   (589 perm/sec)   p_kst 4.490506e-04   p_cons 9.722848e-02   p_joint 3.645570e-04

Joint ci ratio: 1.153230e-01	ci left: 3.433382e-04	ci right 3.856589e-04	k: 1154	n:3170000
Cons ci ratio: 6.708825e-03	ci left: 9.690309e-02	ci right 9.755569e-02	k: 308216	n:3170000
KS ci ratio: 1.038564e-01	ci left: 4.258776e-04	ci right 4.728346e-04	k: 1423	n:3170000
MLL3   3170000 perm   5391 sec   (588 perm/sec)   p_kst 4.488959e-04   p_cons 9.722902e-02   p_joint 3.640379e-04

Joint ci ratio: 1.149750e-01	ci left: 3.443964e-04	ci right 3.867108e-04	k: 1161	n:3180000
Cons ci ratio: 6.697803e-03	ci left: 9.691576e-02	ci right 9.756736e-02	k: 309227	n:3180000
KS ci ratio: 1.037109e-01	ci left: 4.257635e-04	ci right 4.726382e-04	k: 1427	n:3180000
MLL3   3180000 perm   5420 sec   (587 perm/sec)   p_kst 4.487421e-04   p_cons 9.724119e-02   p_joint 3.650943e-04

Joint ci ratio: 1.160287e-01	ci left: 3.369238e-04	ci right 3.787254e-04	k: 1140	n:3190000
Cons ci ratio: 6.687195e-03	ci left: 9.691896e-02	ci right 9.756955e-02	k: 310208	n:3190000
KS ci ratio: 1.036021e-01	ci left: 4.253449e-04	ci right 4.721214e-04	k: 1430	n:3190000
MLL3   3190000 perm   5450 sec   (585 perm/sec)   p_kst 4.482759e-04   p_cons 9.724389e-02   p_joint 3.573668e-04

Joint ci ratio: 1.159272e-01	ci left: 3.364778e-04	ci right 3.781850e-04	k: 1142	n:3200000
Cons ci ratio: 6.676684e-03	ci left: 9.692089e-02	ci right 9.757047e-02	k: 311185	n:3200000
KS ci ratio: 1.034577e-01	ci left: 4.252333e-04	ci right 4.719284e-04	k: 1434	n:3200000
MLL3   3200000 perm   5479 sec   (584 perm/sec)   p_kst 4.481250e-04   p_cons 9.724531e-02   p_joint 3.568750e-04

Joint ci ratio: 1.157754e-01	ci left: 3.363371e-04	ci right 3.779685e-04	k: 1145	n:3210000
Cons ci ratio: 6.666127e-03	ci left: 9.692530e-02	ci right 9.757387e-02	k: 312170	n:3210000
KS ci ratio: 1.033138e-01	ci left: 4.251225e-04	ci right 4.717365e-04	k: 1438	n:3210000
MLL3   3210000 perm   5509 sec   (583 perm/sec)   p_kst 4.479751e-04   p_cons 9.724922e-02   p_joint 3.566978e-04

Joint ci ratio: 1.155738e-01	ci left: 3.364989e-04	ci right 3.780729e-04	k: 1149	n:3220000
Cons ci ratio: 6.655903e-03	ci left: 9.692224e-02	ci right 9.756979e-02	k: 313131	n:3220000
KS ci ratio: 1.031705e-01	ci left: 4.250124e-04	ci right 4.715458e-04	k: 1442	n:3220000
MLL3   3220000 perm   5541 sec   (581 perm/sec)   p_kst 4.478261e-04   p_cons 9.724565e-02   p_joint 3.568323e-04

Joint ci ratio: 1.153733e-01	ci left: 3.366597e-04	ci right 3.781765e-04	k: 1153	n:3230000
Cons ci ratio: 6.645480e-03	ci left: 9.692569e-02	ci right 9.757225e-02	k: 314113	n:3230000
KS ci ratio: 1.030278e-01	ci left: 4.249031e-04	ci right 4.713562e-04	k: 1446	n:3230000
MLL3   3230000 perm   5570 sec   (580 perm/sec)   p_kst 4.476780e-04   p_cons 9.724861e-02   p_joint 3.569659e-04

Joint ci ratio: 1.152735e-01	ci left: 3.362201e-04	ci right 3.776444e-04	k: 1155	n:3240000
Cons ci ratio: 6.634966e-03	ci left: 9.693282e-02	ci right 9.757840e-02	k: 315107	n:3240000
KS ci ratio: 1.027088e-01	ci left: 4.262980e-04	ci right 4.727506e-04	k: 1455	n:3240000
MLL3   3240000 perm   5600 sec   (579 perm/sec)   p_kst 4.490741e-04   p_cons 9.725525e-02   p_joint 3.564815e-04

Joint ci ratio: 1.151243e-01	ci left: 3.360820e-04	ci right 3.774321e-04	k: 1158	n:3250000
Cons ci ratio: 6.624711e-03	ci left: 9.693437e-02	ci right 9.757896e-02	k: 316083	n:3250000
KS ci ratio: 1.026032e-01	ci left: 4.258856e-04	ci right 4.722427e-04	k: 1458	n:3250000
MLL3   3250000 perm   5630 sec   (577 perm/sec)   p_kst 4.486154e-04   p_cons 9.725631e-02   p_joint 3.563077e-04

Joint ci ratio: 1.157757e-01	ci left: 3.311785e-04	ci right 3.721715e-04	k: 1145	n:3260000
Cons ci ratio: 6.614826e-03	ci left: 9.692734e-02	ci right 9.757092e-02	k: 317031	n:3260000
KS ci ratio: 1.024628e-01	ci left: 4.257748e-04	ci right 4.720526e-04	k: 1462	n:3260000
MLL3   3260000 perm   5660 sec   (576 perm/sec)   p_kst 4.484663e-04   p_cons 9.724877e-02   p_joint 3.512270e-04

Joint ci ratio: 1.155741e-01	ci left: 3.313536e-04	ci right 3.722920e-04	k: 1149	n:3270000
Cons ci ratio: 6.604790e-03	ci left: 9.692555e-02	ci right 9.756813e-02	k: 317996	n:3270000
KS ci ratio: 1.024279e-01	ci left: 4.247707e-04	ci right 4.709227e-04	k: 1463	n:3270000
MLL3   3270000 perm   5690 sec   (575 perm/sec)   p_kst 4.474006e-04   p_cons 9.724648e-02   p_joint 3.513761e-04

Joint ci ratio: 1.153737e-01	ci left: 3.315276e-04	ci right 3.724117e-04	k: 1153	n:3280000
Cons ci ratio: 6.594353e-03	ci left: 9.693564e-02	ci right 9.757727e-02	k: 319000	n:3280000
KS ci ratio: 1.022534e-01	ci left: 4.249610e-04	ci right 4.710503e-04	k: 1468	n:3280000
MLL3   3280000 perm   5721 sec   (573 perm/sec)   p_kst 4.475610e-04   p_cons 9.725610e-02   p_joint 3.515244e-04

Joint ci ratio: 1.157759e-01	ci left: 3.281586e-04	ci right 3.687779e-04	k: 1145	n:3290000
Cons ci ratio: 6.584524e-03	ci left: 9.693079e-02	ci right 9.757144e-02	k: 319955	n:3290000
KS ci ratio: 1.021492e-01	ci left: 4.245579e-04	ci right 4.705537e-04	k: 1471	n:3290000
MLL3   3290000 perm   5751 sec   (572 perm/sec)   p_kst 4.471125e-04   p_cons 9.725076e-02   p_joint 3.480243e-04

Joint ci ratio: 1.158265e-01	ci left: 3.268699e-04	ci right 3.673486e-04	k: 1144	n:3300000
Cons ci ratio: 6.574523e-03	ci left: 9.693173e-02	ci right 9.757140e-02	k: 320929	n:3300000
KS ci ratio: 1.019416e-01	ci left: 4.250431e-04	ci right 4.709924e-04	k: 1477	n:3300000
MLL3   3300000 perm   5781 sec   (571 perm/sec)   p_kst 4.475758e-04   p_cons 9.725121e-02   p_joint 3.466667e-04

Joint ci ratio: 1.156751e-01	ci left: 3.267625e-04	ci right 3.671714e-04	k: 1147	n:3310000
Cons ci ratio: 6.563991e-03	ci left: 9.694805e-02	ci right 9.758680e-02	k: 321954	n:3310000
KS ci ratio: 1.018040e-01	ci left: 4.249367e-04	ci right 4.708087e-04	k: 1481	n:3310000
MLL3   3310000 perm   5811 sec   (570 perm/sec)   p_kst 4.474320e-04   p_cons 9.726707e-02   p_joint 3.465257e-04

Joint ci ratio: 1.161314e-01	ci left: 3.231460e-04	ci right 3.632761e-04	k: 1138	n:3320000
Cons ci ratio: 6.553769e-03	ci left: 9.695735e-02	ci right 9.759516e-02	k: 322956	n:3320000
KS ci ratio: 1.016326e-01	ci left: 4.251245e-04	ci right 4.709349e-04	k: 1486	n:3320000
MLL3   3320000 perm   5842 sec   (568 perm/sec)   p_kst 4.475904e-04   p_cons 9.727590e-02   p_joint 3.427711e-04

Joint ci ratio: 1.159280e-01	ci left: 3.233419e-04	ci right 3.634212e-04	k: 1142	n:3330000
Cons ci ratio: 6.544254e-03	ci left: 9.694890e-02	ci right 9.758573e-02	k: 323899	n:3330000
KS ci ratio: 1.014282e-01	ci left: 4.256039e-04	ci right 4.713682e-04	k: 1492	n:3330000
MLL3   3330000 perm   5872 sec   (567 perm/sec)   p_kst 4.480480e-04   p_cons 9.726697e-02   p_joint 3.429429e-04

Joint ci ratio: 1.175863e-01	ci left: 3.130727e-04	ci right 3.524727e-04	k: 1110	n:3340000
Cons ci ratio: 6.534914e-03	ci left: 9.693692e-02	ci right 9.757276e-02	k: 324830	n:3340000
KS ci ratio: 1.012250e-01	ci left: 4.260805e-04	ci right 4.717988e-04	k: 1498	n:3340000
MLL3   3340000 perm   5903 sec   (566 perm/sec)   p_kst 4.485030e-04   p_cons 9.725449e-02   p_joint 3.323353e-04

Joint ci ratio: 1.174279e-01	ci left: 3.130073e-04	ci right 3.523424e-04	k: 1113	n:3350000
Cons ci ratio: 6.524727e-03	ci left: 9.694886e-02	ci right 9.758378e-02	k: 325841	n:3350000
KS ci ratio: 1.009894e-01	ci left: 4.268453e-04	ci right 4.725328e-04	k: 1505	n:3350000
MLL3   3350000 perm   5933 sec   (565 perm/sec)   p_kst 4.492537e-04   p_cons 9.726597e-02   p_joint 3.322388e-04

Joint ci ratio: 1.217109e-01	ci left: 2.898441e-04	ci right 3.276925e-04	k: 1036	n:3360000
Cons ci ratio: 6.515371e-03	ci left: 9.693962e-02	ci right 9.757357e-02	k: 326781	n:3360000
KS ci ratio: 1.007555e-01	ci left: 4.276057e-04	ci right 4.732623e-04	k: 1512	n:3360000
MLL3   3360000 perm   5964 sec   (563 perm/sec)   p_kst 4.500000e-04   p_cons 9.725625e-02   p_joint 3.083333e-04

Joint ci ratio: 1.215938e-01	ci left: 2.895594e-04	ci right 3.273316e-04	k: 1038	n:3370000
Cons ci ratio: 6.506187e-03	ci left: 9.692689e-02	ci right 9.755986e-02	k: 327709	n:3370000
KS ci ratio: 1.005563e-01	ci left: 4.280725e-04	ci right 4.736832e-04	k: 1518	n:3370000
MLL3   3370000 perm   5995 sec   (562 perm/sec)   p_kst 4.504451e-04   p_cons 9.724303e-02   p_joint 3.080119e-04

Joint ci ratio: 1.213022e-01	ci left: 2.901371e-04	ci right 3.278874e-04	k: 1043	n:3380000
Cons ci ratio: 6.496866e-03	ci left: 9.691896e-02	ci right 9.755096e-02	k: 328653	n:3380000
KS ci ratio: 1.001613e-01	ci left: 4.302672e-04	ci right 4.759211e-04	k: 1530	n:3380000
MLL3   3380000 perm   6025 sec   (561 perm/sec)   p_kst 4.526627e-04   p_cons 9.723462e-02   p_joint 3.085799e-04

Joint ci ratio: 1.212442e-01	ci left: 2.895672e-04	ci right 3.272241e-04	k: 1044	n:3390000
Cons ci ratio: 6.487390e-03	ci left: 9.691638e-02	ci right 9.754744e-02	k: 329615	n:3390000
KS ci ratio: 1.000634e-01	ci left: 4.298608e-04	ci right 4.754244e-04	k: 1533	n:3390000
MLL3   3390000 perm   6055 sec   (560 perm/sec)   p_kst 4.522124e-04   p_cons 9.723156e-02   p_joint 3.079646e-04

Joint ci ratio: 1.210128e-01	ci left: 2.898564e-04	ci right 3.274738e-04	k: 1048	n:3400000
Cons ci ratio: 6.477922e-03	ci left: 9.691469e-02	ci right 9.754482e-02	k: 330580	n:3400000
KS ci ratio: 9.983579e-02	ci left: 4.306039e-04	ci right 4.761363e-04	k: 1540	n:3400000
MLL3   3400000 perm   6085 sec   (559 perm/sec)   p_kst 4.529412e-04   p_cons 9.722941e-02   p_joint 3.082353e-04

Joint ci ratio: 1.208976e-01	ci left: 2.895751e-04	ci right 3.271177e-04	k: 1050	n:3410000
Cons ci ratio: 6.468301e-03	ci left: 9.691829e-02	ci right 9.754750e-02	k: 331563	n:3410000
KS ci ratio: 9.967421e-02	ci left: 4.307708e-04	ci right 4.762429e-04	k: 1545	n:3410000
MLL3   3410000 perm   6115 sec   (558 perm/sec)   p_kst 4.530792e-04   p_cons 9.723255e-02   p_joint 3.079179e-04

Joint ci ratio: 1.204969e-01	ci left: 2.907134e-04	ci right 3.282698e-04	k: 1057	n:3420000
Cons ci ratio: 6.459185e-03	ci left: 9.690931e-02	ci right 9.753757e-02	k: 332503	n:3420000
KS ci ratio: 9.944928e-02	ci left: 4.315070e-04	ci right 4.769481e-04	k: 1552	n:3420000
MLL3   3420000 perm   6145 sec   (557 perm/sec)   p_kst 4.538012e-04   p_cons 9.722310e-02   p_joint 3.090643e-04

Joint ci ratio: 1.208977e-01	ci left: 2.878866e-04	ci right 3.252103e-04	k: 1050	n:3430000
Cons ci ratio: 6.449444e-03	ci left: 9.691843e-02	ci right 9.754580e-02	k: 333505	n:3430000
KS ci ratio: 9.932146e-02	ci left: 4.313862e-04	ci right 4.767527e-04	k: 1556	n:3430000
MLL3   3430000 perm   6176 sec   (555 perm/sec)   p_kst 4.536443e-04   p_cons 9.723178e-02   p_joint 3.061224e-04

Joint ci ratio: 1.206683e-01	ci left: 2.881774e-04	ci right 3.254629e-04	k: 1054	n:3440000
Cons ci ratio: 6.439789e-03	ci left: 9.692634e-02	ci right 9.755282e-02	k: 334503	n:3440000
KS ci ratio: 9.925777e-02	ci left: 4.306991e-04	ci right 4.759626e-04	k: 1558	n:3440000
MLL3   3440000 perm   6206 sec   (554 perm/sec)   p_kst 4.529070e-04   p_cons 9.723924e-02   p_joint 3.063953e-04

Joint ci ratio: 1.204971e-01	ci left: 2.881855e-04	ci right 3.254153e-04	k: 1057	n:3450000
Cons ci ratio: 6.430559e-03	ci left: 9.692379e-02	ci right 9.754935e-02	k: 335465	n:3450000
KS ci ratio: 9.913069e-02	ci left: 4.305814e-04	ci right 4.757712e-04	k: 1562	n:3450000
MLL3   3450000 perm   6237 sec   (553 perm/sec)   p_kst 4.527536e-04   p_cons 9.723623e-02   p_joint 3.063768e-04

Joint ci ratio: 1.207830e-01	ci left: 2.859511e-04	ci right 3.229861e-04	k: 1052	n:3460000
Cons ci ratio: 6.420640e-03	ci left: 9.694116e-02	ci right 9.756587e-02	k: 336496	n:3460000
KS ci ratio: 9.903571e-02	ci left: 4.301825e-04	ci right 4.752847e-04	k: 1565	n:3460000
MLL3   3460000 perm   6269 sec   (552 perm/sec)   p_kst 4.523121e-04   p_cons 9.725318e-02   p_joint 3.040462e-04

Joint ci ratio: 1.206113e-01	ci left: 2.859654e-04	ci right 3.229460e-04	k: 1055	n:3470000
Cons ci ratio: 6.411324e-03	ci left: 9.694319e-02	ci right 9.756700e-02	k: 337474	n:3470000
KS ci ratio: 9.887798e-02	ci left: 4.303480e-04	ci right 4.753915e-04	k: 1570	n:3470000
MLL3   3470000 perm   6300 sec   (551 perm/sec)   p_kst 4.524496e-04   p_cons 9.725476e-02   p_joint 3.040346e-04

Joint ci ratio: 1.204403e-01	ci left: 2.859798e-04	ci right 3.229060e-04	k: 1058	n:3480000
Cons ci ratio: 6.401651e-03	ci left: 9.695610e-02	ci right 9.757905e-02	k: 338490	n:3480000
KS ci ratio: 9.868968e-02	ci left: 4.307929e-04	ci right 4.757922e-04	k: 1576	n:3480000
MLL3   3480000 perm   6332 sec   (550 perm/sec)   p_kst 4.528736e-04   p_cons 9.726724e-02   p_joint 3.040230e-04

Joint ci ratio: 1.202135e-01	ci left: 2.862720e-04	ci right 3.231614e-04	k: 1062	n:3490000
Cons ci ratio: 6.392021e-03	ci left: 9.696895e-02	ci right 9.759104e-02	k: 339506	n:3490000
KS ci ratio: 9.853359e-02	ci left: 4.309559e-04	ci right 4.758969e-04	k: 1581	n:3490000
MLL3   3490000 perm   6364 sec   (548 perm/sec)   p_kst 4.530086e-04   p_cons 9.727966e-02   p_joint 3.042980e-04

Joint ci ratio: 1.217704e-01	ci left: 2.779732e-04	ci right 3.142905e-04	k: 1035	n:3500000
Cons ci ratio: 6.382486e-03	ci left: 9.698029e-02	ci right 9.760152e-02	k: 340517	n:3500000
KS ci ratio: 9.847140e-02	ci left: 4.302820e-04	ci right 4.751227e-04	k: 1583	n:3500000
MLL3   3500000 perm   6395 sec   (547 perm/sec)   p_kst 4.522857e-04   p_cons 9.729057e-02   p_joint 2.957143e-04

Joint ci ratio: 1.216531e-01	ci left: 2.777337e-04	ci right 3.139822e-04	k: 1037	n:3510000
Cons ci ratio: 6.373315e-03	ci left: 9.698275e-02	ci right 9.760310e-02	k: 341497	n:3510000
KS ci ratio: 9.837831e-02	ci left: 4.298897e-04	ci right 4.746448e-04	k: 1586	n:3510000
MLL3   3510000 perm   6427 sec   (546 perm/sec)   p_kst 4.518519e-04   p_cons 9.729259e-02   p_joint 2.954416e-04

Joint ci ratio: 1.215361e-01	ci left: 2.774956e-04	ci right 3.136757e-04	k: 1039	n:3520000
Cons ci ratio: 6.364347e-03	ci left: 9.698066e-02	ci right 9.760012e-02	k: 342461	n:3520000
KS ci ratio: 9.828547e-02	ci left: 4.294998e-04	ci right 4.741696e-04	k: 1589	n:3520000
MLL3   3520000 perm   6459 sec   (545 perm/sec)   p_kst 4.514205e-04   p_cons 9.729006e-02   p_joint 2.951705e-04

Joint ci ratio: 1.214777e-01	ci left: 2.769841e-04	ci right 3.130790e-04	k: 1040	n:3530000
Cons ci ratio: 6.355807e-03	ci left: 9.696783e-02	ci right 9.758637e-02	k: 343387	n:3530000
KS ci ratio: 9.822375e-02	ci left: 4.288357e-04	ci right 4.734068e-04	k: 1591	n:3530000
MLL3   3530000 perm   6491 sec   (544 perm/sec)   p_kst 4.507082e-04   p_cons 9.727677e-02   p_joint 2.946176e-04

Joint ci ratio: 1.212450e-01	ci left: 2.772973e-04	ci right 3.133588e-04	k: 1044	n:3540000
Cons ci ratio: 6.346842e-03	ci left: 9.696777e-02	ci right 9.758544e-02	k: 344358	n:3540000
KS ci ratio: 9.810059e-02	ci left: 4.287265e-04	ci right 4.732272e-04	k: 1595	n:3540000
MLL3   3540000 perm   6523 sec   (543 perm/sec)   p_kst 4.505650e-04   p_cons 9.727627e-02   p_joint 2.949153e-04

Joint ci ratio: 1.211870e-01	ci left: 2.767894e-04	ci right 3.127664e-04	k: 1045	n:3550000
Cons ci ratio: 6.337894e-03	ci left: 9.696827e-02	ci right 9.758507e-02	k: 345331	n:3550000
KS ci ratio: 9.797790e-02	ci left: 4.286180e-04	ci right 4.730486e-04	k: 1599	n:3550000
MLL3   3550000 perm   6555 sec   (542 perm/sec)   p_kst 4.504225e-04   p_cons 9.727634e-02   p_joint 2.943662e-04

Joint ci ratio: 1.208409e-01	ci left: 2.776462e-04	ci right 3.136242e-04	k: 1051	n:3560000
Cons ci ratio: 6.328801e-03	ci left: 9.697382e-02	ci right 9.758976e-02	k: 346322	n:3560000
KS ci ratio: 9.776424e-02	ci left: 4.293321e-04	ci right 4.737342e-04	k: 1606	n:3560000
MLL3   3560000 perm   6587 sec   (540 perm/sec)   p_kst 4.511236e-04   p_cons 9.728146e-02   p_joint 2.952247e-04

Joint ci ratio: 1.207262e-01	ci left: 2.774118e-04	ci right 3.133228e-04	k: 1053	n:3570000
Cons ci ratio: 6.319627e-03	ci left: 9.698269e-02	ci right 9.759780e-02	k: 347325	n:3570000
KS ci ratio: 9.761250e-02	ci left: 4.294959e-04	ci right 4.738419e-04	k: 1611	n:3570000
MLL3   3570000 perm   6619 sec   (539 perm/sec)   p_kst 4.512605e-04   p_cons 9.728992e-02   p_joint 2.949580e-04

Joint ci ratio: 1.220067e-01	ci left: 2.706782e-04	ci right 3.061160e-04	k: 1031	n:3580000
Cons ci ratio: 6.311155e-03	ci left: 9.697311e-02	ci right 9.758732e-02	k: 348262	n:3580000
KS ci ratio: 9.749162e-02	ci left: 4.293862e-04	ci right 4.736629e-04	k: 1615	n:3580000
MLL3   3580000 perm   6651 sec   (538 perm/sec)   p_kst 4.511173e-04   p_cons 9.727989e-02   p_joint 2.879888e-04

Joint ci ratio: 1.221845e-01	ci left: 2.691140e-04	ci right 3.044021e-04	k: 1028	n:3590000
Cons ci ratio: 6.302937e-03	ci left: 9.695746e-02	ci right 9.757077e-02	k: 349177	n:3590000
KS ci ratio: 9.737119e-02	ci left: 4.292772e-04	ci right 4.734849e-04	k: 1619	n:3590000
MLL3   3590000 perm   6683 sec   (537 perm/sec)   p_kst 4.509749e-04   p_cons 9.726379e-02   p_joint 2.863510e-04

Joint ci ratio: 1.220068e-01	ci left: 2.691744e-04	ci right 3.044153e-04	k: 1031	n:3600000
Cons ci ratio: 6.294302e-03	ci left: 9.695438e-02	ci right 9.756683e-02	k: 350137	n:3600000
KS ci ratio: 9.716147e-02	ci left: 4.299819e-04	ci right 4.741614e-04	k: 1626	n:3600000
MLL3   3600000 perm   6716 sec   (536 perm/sec)   p_kst 4.516667e-04   p_cons 9.726028e-02   p_joint 2.863889e-04

Joint ci ratio: 1.217710e-01	ci left: 2.695030e-04	ci right 3.047139e-04	k: 1035	n:3610000
Cons ci ratio: 6.285654e-03	ci left: 9.695270e-02	ci right 9.756429e-02	k: 351102	n:3610000
KS ci ratio: 9.701251e-02	ci left: 4.301423e-04	ci right 4.742666e-04	k: 1631	n:3610000
MLL3   3610000 perm   6749 sec   (535 perm/sec)   p_kst 4.518006e-04   p_cons 9.725817e-02   p_joint 2.867036e-04

Joint ci ratio: 1.214782e-01	ci left: 2.700977e-04	ci right 3.052953e-04	k: 1040	n:3620000
Cons ci ratio: 6.277011e-03	ci left: 9.695185e-02	ci right 9.756260e-02	k: 352070	n:3620000
KS ci ratio: 9.671658e-02	ci left: 4.316496e-04	ci right 4.757857e-04	k: 1641	n:3620000
MLL3   3620000 perm   6782 sec   (534 perm/sec)   p_kst 4.533149e-04   p_cons 9.725691e-02   p_joint 2.872928e-04

Joint ci ratio: 1.213616e-01	ci left: 2.698879e-04	ci right 3.050220e-04	k: 1042	n:3630000
Cons ci ratio: 6.268503e-03	ci left: 9.694827e-02	ci right 9.755816e-02	k: 353028	n:3630000
KS ci ratio: 9.659899e-02	ci left: 4.315357e-04	ci right 4.756036e-04	k: 1645	n:3630000
MLL3   3630000 perm   6814 sec   (533 perm/sec)   p_kst 4.531680e-04   p_cons 9.725289e-02   p_joint 2.870523e-04

Joint ci ratio: 1.212455e-01	ci left: 2.696792e-04	ci right 3.047501e-04	k: 1044	n:3640000
Cons ci ratio: 6.259735e-03	ci left: 9.695293e-02	ci right 9.756200e-02	k: 354016	n:3640000
KS ci ratio: 9.645260e-02	ci left: 4.316907e-04	ci right 4.757038e-04	k: 1650	n:3640000
MLL3   3640000 perm   6848 sec   (532 perm/sec)   p_kst 4.532967e-04   p_cons 9.725714e-02   p_joint 2.868132e-04

Joint ci ratio: 1.210718e-01	ci left: 2.697374e-04	ci right 3.047620e-04	k: 1047	n:3650000
Cons ci ratio: 6.251579e-03	ci left: 9.694143e-02	ci right 9.754962e-02	k: 354945	n:3650000
KS ci ratio: 9.630688e-02	ci left: 4.318448e-04	ci right 4.758033e-04	k: 1655	n:3650000
MLL3   3650000 perm   6881 sec   (530 perm/sec)   p_kst 4.534247e-04   p_cons 9.724521e-02   p_joint 2.868493e-04

Joint ci ratio: 1.208414e-01	ci left: 2.700602e-04	ci right 3.050553e-04	k: 1051	n:3660000
Cons ci ratio: 6.243785e-03	ci left: 9.692071e-02	ci right 9.752802e-02	k: 355840	n:3660000
KS ci ratio: 9.616181e-02	ci left: 4.319981e-04	ci right 4.759023e-04	k: 1660	n:3660000
MLL3   3660000 perm   6914 sec   (529 perm/sec)   p_kst 4.535519e-04   p_cons 9.722404e-02   p_joint 2.871585e-04

Joint ci ratio: 1.207840e-01	ci left: 2.695886e-04	ci right 3.045048e-04	k: 1052	n:3670000
Cons ci ratio: 6.235207e-03	ci left: 9.692296e-02	ci right 9.752945e-02	k: 356819	n:3670000
KS ci ratio: 9.613292e-02	ci left: 4.310869e-04	ci right 4.748846e-04	k: 1661	n:3670000
MLL3   3670000 perm   6947 sec   (528 perm/sec)   p_kst 4.525886e-04   p_cons 9.722589e-02   p_joint 2.866485e-04

Joint ci ratio: 1.206695e-01	ci left: 2.693831e-04	ci right 3.042372e-04	k: 1054	n:3680000
Cons ci ratio: 6.227022e-03	ci left: 9.691516e-02	ci right 9.752080e-02	k: 357761	n:3680000
KS ci ratio: 9.593108e-02	ci left: 4.317720e-04	ci right 4.755420e-04	k: 1668	n:3680000
MLL3   3680000 perm   6981 sec   (527 perm/sec)   p_kst 4.532609e-04   p_cons 9.721766e-02   p_joint 2.864130e-04

Joint ci ratio: 1.204983e-01	ci left: 2.694415e-04	ci right 3.042502e-04	k: 1057	n:3690000
Cons ci ratio: 6.219050e-03	ci left: 9.690226e-02	ci right 9.750704e-02	k: 358684	n:3690000
KS ci ratio: 9.581634e-02	ci left: 4.316599e-04	ci right 4.753633e-04	k: 1672	n:3690000
MLL3   3690000 perm   7014 sec   (526 perm/sec)   p_kst 4.531165e-04   p_cons 9.720434e-02   p_joint 2.864499e-04

Joint ci ratio: 1.202711e-01	ci left: 2.697618e-04	ci right 3.045416e-04	k: 1061	n:3700000
Cons ci ratio: 6.210832e-03	ci left: 9.689726e-02	ci right 9.750121e-02	k: 359636	n:3700000
KS ci ratio: 9.567347e-02	ci left: 4.318123e-04	ci right 4.754622e-04	k: 1677	n:3700000
MLL3   3700000 perm   7047 sec   (525 perm/sec)   p_kst 4.532432e-04   p_cons 9.719892e-02   p_joint 2.867568e-04

Joint ci ratio: 1.199328e-01	ci left: 2.706034e-04	ci right 3.053865e-04	k: 1067	n:3710000
Cons ci ratio: 6.202475e-03	ci left: 9.689713e-02	ci right 9.750026e-02	k: 360606	n:3710000
KS ci ratio: 9.555965e-02	ci left: 4.317007e-04	ci right 4.752846e-04	k: 1681	n:3710000
MLL3   3710000 perm   7081 sec   (524 perm/sec)   p_kst 4.530997e-04   p_cons 9.719838e-02   p_joint 2.876011e-04

Joint ci ratio: 1.198206e-01	ci left: 2.703975e-04	ci right 3.051193e-04	k: 1069	n:3720000
Cons ci ratio: 6.194323e-03	ci left: 9.689217e-02	ci right 9.749448e-02	k: 361558	n:3720000
KS ci ratio: 9.538964e-02	ci left: 4.321146e-04	ci right 4.756583e-04	k: 1687	n:3720000
MLL3   3720000 perm   7114 sec   (523 perm/sec)   p_kst 4.534946e-04   p_cons 9.719301e-02   p_joint 2.873656e-04

Joint ci ratio: 1.197647e-01	ci left: 2.699326e-04	ci right 3.045774e-04	k: 1070	n:3730000
Cons ci ratio: 6.186183e-03	ci left: 9.688778e-02	ci right 9.748926e-02	k: 362512	n:3730000
KS ci ratio: 9.527683e-02	ci left: 4.320030e-04	ci right 4.754811e-04	k: 1691	n:3730000
MLL3   3730000 perm   7147 sec   (522 perm/sec)   p_kst 4.533512e-04   p_cons 9.718820e-02   p_joint 2.868633e-04

Joint ci ratio: 1.194861e-01	ci left: 2.705078e-04	ci right 3.051399e-04	k: 1075	n:3740000
Cons ci ratio: 6.177746e-03	ci left: 9.689275e-02	ci right 9.749344e-02	k: 363501	n:3740000
KS ci ratio: 9.516442e-02	ci left: 4.318919e-04	ci right 4.753047e-04	k: 1695	n:3740000
MLL3   3740000 perm   7180 sec   (521 perm/sec)   p_kst 4.532086e-04   p_cons 9.719278e-02   p_joint 2.874332e-04

Joint ci ratio: 1.193752e-01	ci left: 2.703038e-04	ci right 3.048755e-04	k: 1077	n:3750000
Cons ci ratio: 6.169250e-03	ci left: 9.690036e-02	ci right 9.750026e-02	k: 364500	n:3750000
KS ci ratio: 9.508038e-02	ci left: 4.315212e-04	ci right 4.748562e-04	k: 1698	n:3750000
MLL3   3750000 perm   7214 sec   (520 perm/sec)   p_kst 4.528000e-04   p_cons 9.720000e-02   p_joint 2.872000e-04

Joint ci ratio: 1.192647e-01	ci left: 2.701010e-04	ci right 3.046124e-04	k: 1079	n:3760000
Cons ci ratio: 6.161153e-03	ci left: 9.689757e-02	ci right 9.749667e-02	k: 365460	n:3760000
KS ci ratio: 9.494078e-02	ci left: 4.316717e-04	ci right 4.749547e-04	k: 1703	n:3760000
MLL3   3760000 perm   7248 sec   (519 perm/sec)   p_kst 4.529255e-04   p_cons 9.719681e-02   p_joint 2.869681e-04

Joint ci ratio: 1.190994e-01	ci left: 2.701565e-04	ci right 3.046239e-04	k: 1082	n:3770000
Cons ci ratio: 6.152846e-03	ci left: 9.690168e-02	ci right 9.750000e-02	k: 366446	n:3770000
KS ci ratio: 9.480179e-02	ci left: 4.318215e-04	ci right 4.750526e-04	k: 1708	n:3770000
MLL3   3770000 perm   7282 sec   (518 perm/sec)   p_kst 4.530504e-04   p_cons 9.720053e-02   p_joint 2.870027e-04

Joint ci ratio: 1.189895e-01	ci left: 2.699552e-04	ci right 3.043629e-04	k: 1084	n:3780000
Cons ci ratio: 6.144637e-03	ci left: 9.690393e-02	ci right 9.750145e-02	k: 367425	n:3780000
KS ci ratio: 9.466340e-02	ci left: 4.319705e-04	ci right 4.751499e-04	k: 1713	n:3780000
MLL3   3780000 perm   7316 sec   (517 perm/sec)   p_kst 4.531746e-04   p_cons 9.720238e-02   p_joint 2.867725e-04

Joint ci ratio: 1.188254e-01	ci left: 2.700109e-04	ci right 3.043749e-04	k: 1087	n:3790000
Cons ci ratio: 6.136645e-03	ci left: 9.690089e-02	ci right 9.749762e-02	k: 368384	n:3790000
KS ci ratio: 9.458069e-02	ci left: 4.316036e-04	ci right 4.747065e-04	k: 1716	n:3790000
MLL3   3790000 perm   7350 sec   (516 perm/sec)   p_kst 4.527704e-04   p_cons 9.719894e-02   p_joint 2.868074e-04

Joint ci ratio: 1.190445e-01	ci left: 2.682790e-04	ci right 3.024900e-04	k: 1083	n:3800000
Cons ci ratio: 6.128731e-03	ci left: 9.689655e-02	ci right 9.749248e-02	k: 369338	n:3800000
KS ci ratio: 9.433372e-02	ci left: 4.327803e-04	ci right 4.758816e-04	k: 1725	n:3800000
MLL3   3800000 perm   7384 sec   (515 perm/sec)   p_kst 4.539474e-04   p_cons 9.719421e-02   p_joint 2.850000e-04

Joint ci ratio: 1.189897e-01	ci left: 2.678295e-04	ci right 3.019663e-04	k: 1084	n:3810000
Cons ci ratio: 6.121048e-03	ci left: 9.688647e-02	ci right 9.748159e-02	k: 370270	n:3810000
KS ci ratio: 9.422461e-02	ci left: 4.326695e-04	ci right 4.757072e-04	k: 1729	n:3810000
MLL3   3810000 perm   7419 sec   (514 perm/sec)   p_kst 4.538058e-04   p_cons 9.718373e-02   p_joint 2.845144e-04

Joint ci ratio: 1.188255e-01	ci left: 2.678904e-04	ci right 3.019845e-04	k: 1087	n:3820000
Cons ci ratio: 6.112984e-03	ci left: 9.688821e-02	ci right 9.748256e-02	k: 371247	n:3820000
KS ci ratio: 9.417022e-02	ci left: 4.320481e-04	ci right 4.749978e-04	k: 1731	n:3820000
MLL3   3820000 perm   7453 sec   (513 perm/sec)   p_kst 4.531414e-04   p_cons 9.718508e-02   p_joint 2.845550e-04

Joint ci ratio: 1.187165e-01	ci left: 2.676976e-04	ci right 3.017338e-04	k: 1089	n:3830000
Cons ci ratio: 6.105324e-03	ci left: 9.687925e-02	ci right 9.747279e-02	k: 372183	n:3830000
KS ci ratio: 9.411593e-02	ci left: 4.314299e-04	ci right 4.742921e-04	k: 1733	n:3830000
MLL3   3830000 perm   7487 sec   (512 perm/sec)   p_kst 4.524804e-04   p_cons 9.717572e-02   p_joint 2.843342e-04

Joint ci ratio: 1.192650e-01	ci left: 2.644738e-04	ci right 2.982664e-04	k: 1079	n:3840000
Cons ci ratio: 6.096842e-03	ci left: 9.689479e-02	ci right 9.748759e-02	k: 373213	n:3840000
KS ci ratio: 9.384565e-02	ci left: 4.328493e-04	ci right 4.757223e-04	k: 1743	n:3840000
MLL3   3840000 perm   7522 sec   (510 perm/sec)   p_kst 4.539062e-04   p_cons 9.719089e-02   p_joint 2.809896e-04

Joint ci ratio: 1.190997e-01	ci left: 2.645429e-04	ci right 2.982941e-04	k: 1082	n:3850000
Cons ci ratio: 6.088873e-03	ci left: 9.689649e-02	ci right 9.748853e-02	k: 374190	n:3850000
KS ci ratio: 9.376505e-02	ci left: 4.324860e-04	ci right 4.752841e-04	k: 1746	n:3850000
MLL3   3850000 perm   7557 sec   (509 perm/sec)   p_kst 4.535065e-04   p_cons 9.719221e-02   p_joint 2.810390e-04

Joint ci ratio: 1.187711e-01	ci left: 2.653657e-04	ci right 2.991220e-04	k: 1088	n:3860000
Cons ci ratio: 6.080962e-03	ci left: 9.689741e-02	ci right 9.748869e-02	k: 375164	n:3860000
KS ci ratio: 9.360443e-02	ci left: 4.328836e-04	ci right 4.756436e-04	k: 1752	n:3860000
MLL3   3860000 perm   7591 sec   (508 perm/sec)   p_kst 4.538860e-04   p_cons 9.719275e-02   p_joint 2.818653e-04

Joint ci ratio: 1.186078e-01	ci left: 2.654322e-04	ci right 2.991472e-04	k: 1091	n:3870000
Cons ci ratio: 6.073208e-03	ci left: 9.689471e-02	ci right 9.748522e-02	k: 376124	n:3870000
KS ci ratio: 9.352446e-02	ci left: 4.325220e-04	ci right 4.752079e-04	k: 1755	n:3870000
MLL3   3870000 perm   7626 sec   (507 perm/sec)   p_kst 4.534884e-04   p_cons 9.718966e-02   p_joint 2.819121e-04

Joint ci ratio: 1.188258e-01	ci left: 2.637477e-04	ci right 2.973147e-04	k: 1087	n:3880000
Cons ci ratio: 6.065455e-03	ci left: 9.689281e-02	ci right 9.748254e-02	k: 377087	n:3880000
KS ci ratio: 9.339159e-02	ci left: 4.326658e-04	ci right 4.753019e-04	k: 1760	n:3880000
MLL3   3880000 perm   7661 sec   (506 perm/sec)   p_kst 4.536082e-04   p_cons 9.718737e-02   p_joint 2.801546e-04

Joint ci ratio: 1.187167e-01	ci left: 2.635686e-04	ci right 2.970798e-04	k: 1089	n:3890000
Cons ci ratio: 6.057511e-03	ci left: 9.689732e-02	ci right 9.748631e-02	k: 378075	n:3890000
KS ci ratio: 9.331216e-02	ci left: 4.323068e-04	ci right 4.748693e-04	k: 1763	n:3890000
MLL3   3890000 perm   7696 sec   (505 perm/sec)   p_kst 4.532134e-04   p_cons 9.719152e-02   p_joint 2.799486e-04

Joint ci ratio: 1.187168e-01	ci left: 2.628928e-04	ci right 2.963181e-04	k: 1089	n:3900000
Cons ci ratio: 6.049669e-03	ci left: 9.689977e-02	ci right 9.748801e-02	k: 379055	n:3900000
KS ci ratio: 9.331221e-02	ci left: 4.311983e-04	ci right 4.736517e-04	k: 1763	n:3900000
MLL3   3900000 perm   7731 sec   (504 perm/sec)   p_kst 4.520513e-04   p_cons 9.719359e-02   p_joint 2.792308e-04

Joint ci ratio: 1.185537e-01	ci left: 2.629649e-04	ci right 2.963503e-04	k: 1092	n:3910000
Cons ci ratio: 6.042482e-03	ci left: 9.688407e-02	ci right 9.747151e-02	k: 379964	n:3910000
KS ci ratio: 9.320660e-02	ci left: 4.310947e-04	ci right 4.734872e-04	k: 1767	n:3910000
MLL3   3910000 perm   7766 sec   (503 perm/sec)   p_kst 4.519182e-04   p_cons 9.717749e-02   p_joint 2.792839e-04

Joint ci ratio: 1.183914e-01	ci left: 2.630367e-04	ci right 2.963822e-04	k: 1095	n:3920000
Cons ci ratio: 6.034487e-03	ci left: 9.689266e-02	ci right 9.747937e-02	k: 380968	n:3920000
KS ci ratio: 9.310135e-02	ci left: 4.309916e-04	ci right 4.733235e-04	k: 1771	n:3920000
MLL3   3920000 perm   7801 sec   (503 perm/sec)   p_kst 4.517857e-04   p_cons 9.718571e-02   p_joint 2.793367e-04

Joint ci ratio: 1.181222e-01	ci left: 2.636020e-04	ci right 2.969380e-04	k: 1100	n:3930000
Cons ci ratio: 6.026795e-03	ci left: 9.689332e-02	ci right 9.747928e-02	k: 381941	n:3930000
KS ci ratio: 9.302266e-02	ci left: 4.306405e-04	ci right 4.729002e-04	k: 1774	n:3930000
MLL3   3930000 perm   7835 sec   (502 perm/sec)   p_kst 4.513995e-04   p_cons 9.718601e-02   p_joint 2.798982e-04

Joint ci ratio: 1.215965e-01	ci left: 2.476685e-04	ci right 2.799769e-04	k: 1038	n:3940000
Cons ci ratio: 6.019140e-03	ci left: 9.689373e-02	ci right 9.747895e-02	k: 382913	n:3940000
KS ci ratio: 9.281369e-02	ci left: 4.315308e-04	ci right 4.737776e-04	k: 1782	n:3940000
MLL3   3940000 perm   7871 sec   (501 perm/sec)   p_kst 4.522843e-04   p_cons 9.718604e-02   p_joint 2.634518e-04

Joint ci ratio: 1.232693e-01	ci left: 2.401699e-04	ci right 2.719626e-04	k: 1010	n:3950000
Cons ci ratio: 6.011116e-03	ci left: 9.690576e-02	ci right 9.749027e-02	k: 383931	n:3950000
KS ci ratio: 9.263201e-02	ci left: 4.321693e-04	ci right 4.743914e-04	k: 1789	n:3950000
MLL3   3950000 perm   7906 sec   (500 perm/sec)   p_kst 4.529114e-04   p_cons 9.719772e-02   p_joint 2.556962e-04

Joint ci ratio: 1.232084e-01	ci left: 2.398081e-04	ci right 2.715362e-04	k: 1011	n:3960000
Cons ci ratio: 6.003634e-03	ci left: 9.690286e-02	ci right 9.748662e-02	k: 384890	n:3960000
KS ci ratio: 9.242566e-02	ci left: 4.330515e-04	ci right 4.752603e-04	k: 1797	n:3960000
MLL3   3960000 perm   7941 sec   (499 perm/sec)   p_kst 4.537879e-04   p_cons 9.719444e-02   p_joint 2.553030e-04

Joint ci ratio: 1.230868e-01	ci left: 2.396924e-04	ci right 2.713715e-04	k: 1013	n:3970000
Cons ci ratio: 5.996463e-03	ci left: 9.689167e-02	ci right 9.747466e-02	k: 385816	n:3970000
KS ci ratio: 9.229741e-02	ci left: 4.331910e-04	ci right 4.753517e-04	k: 1802	n:3970000
MLL3   3970000 perm   7977 sec   (498 perm/sec)   p_kst 4.539043e-04   p_cons 9.718287e-02   p_joint 2.551637e-04

Joint ci ratio: 1.229656e-01	ci left: 2.395772e-04	ci right 2.712076e-04	k: 1015	n:3980000
Cons ci ratio: 5.989087e-03	ci left: 9.688731e-02	ci right 9.746956e-02	k: 386769	n:3980000
KS ci ratio: 9.216969e-02	ci left: 4.333299e-04	ci right 4.754426e-04	k: 1807	n:3980000
MLL3   3980000 perm   8012 sec   (497 perm/sec)   p_kst 4.540201e-04   p_cons 9.717814e-02   p_joint 2.550251e-04

Joint ci ratio: 1.229052e-01	ci left: 2.392196e-04	ci right 2.707862e-04	k: 1016	n:3990000
Cons ci ratio: 5.981900e-03	ci left: 9.687822e-02	ci right 9.745971e-02	k: 387703	n:3990000
KS ci ratio: 9.204250e-02	ci left: 4.334681e-04	ci right 4.755330e-04	k: 1812	n:3990000
MLL3   3990000 perm   8048 sec   (496 perm/sec)   p_kst 4.541353e-04   p_cons 9.716867e-02   p_joint 2.546366e-04

Joint ci ratio: 1.227845e-01	ci left: 2.391062e-04	ci right 2.706246e-04	k: 1018	n:4000000
Cons ci ratio: 5.974585e-03	ci left: 9.687366e-02	ci right 9.745442e-02	k: 388655	n:4000000
KS ci ratio: 9.199181e-02	ci left: 4.328730e-04	ci right 4.748557e-04	k: 1814	n:4000000
MLL3   4000000 perm   8084 sec   (495 perm/sec)   p_kst 4.535000e-04   p_cons 9.716375e-02   p_joint 2.545000e-04

Joint ci ratio: 1.232695e-01	ci left: 2.365763e-04	ci right 2.678934e-04	k: 1010	n:4010000
Cons ci ratio: 5.967467e-03	ci left: 9.686416e-02	ci right 9.744416e-02	k: 389587	n:4010000
KS ci ratio: 9.191589e-02	ci left: 4.325244e-04	ci right 4.744368e-04	k: 1817	n:4010000
MLL3   4010000 perm   8119 sec   (494 perm/sec)   p_kst 4.531172e-04   p_cons 9.715387e-02   p_joint 2.518703e-04

Joint ci ratio: 1.232696e-01	ci left: 2.359878e-04	ci right 2.672270e-04	k: 1010	n:4020000
Cons ci ratio: 5.959428e-03	ci left: 9.688252e-02	ci right 9.746184e-02	k: 390631	n:4020000
KS ci ratio: 9.189066e-02	ci left: 4.316915e-04	ci right 4.735111e-04	k: 1818	n:4020000
MLL3   4020000 perm   8155 sec   (493 perm/sec)   p_kst 4.522388e-04   p_cons 9.717189e-02   p_joint 2.512438e-04

Joint ci ratio: 1.230871e-01	ci left: 2.361237e-04	ci right 2.673312e-04	k: 1013	n:4030000
Cons ci ratio: 5.951817e-03	ci left: 9.688914e-02	ci right 9.746777e-02	k: 391628	n:4030000
KS ci ratio: 9.184022e-02	ci left: 4.311052e-04	ci right 4.728439e-04	k: 1820	n:4030000
MLL3   4030000 perm   8191 sec   (492 perm/sec)   p_kst 4.516129e-04   p_cons 9.717816e-02   p_joint 2.513648e-04

Joint ci ratio: 1.228450e-01	ci left: 2.364989e-04	ci right 2.676901e-04	k: 1017	n:4040000
Cons ci ratio: 5.944210e-03	ci left: 9.689647e-02	ci right 9.747440e-02	k: 392628	n:4040000
KS ci ratio: 9.171439e-02	ci left: 4.312473e-04	ci right 4.729395e-04	k: 1825	n:4040000
MLL3   4040000 perm   8227 sec   (491 perm/sec)   p_kst 4.517327e-04   p_cons 9.718515e-02   p_joint 2.517327e-04

Joint ci ratio: 1.227245e-01	ci left: 2.363936e-04	ci right 2.675381e-04	k: 1019	n:4050000
Cons ci ratio: 5.936799e-03	ci left: 9.689884e-02	ci right 9.747606e-02	k: 393608	n:4050000
KS ci ratio: 9.156406e-02	ci left: 4.316300e-04	ci right 4.732871e-04	k: 1831	n:4050000
MLL3   4050000 perm   8263 sec   (490 perm/sec)   p_kst 4.520988e-04   p_cons 9.718716e-02   p_joint 2.516049e-04

Joint ci ratio: 1.225444e-01	ci left: 2.365276e-04	ci right 2.676407e-04	k: 1022	n:4060000
Cons ci ratio: 5.929615e-03	ci left: 9.689529e-02	ci right 9.747179e-02	k: 394564	n:4060000
KS ci ratio: 9.141447e-02	ci left: 4.320109e-04	ci right 4.736330e-04	k: 1837	n:4060000
MLL3   4060000 perm   8299 sec   (489 perm/sec)   p_kst 4.524631e-04   p_cons 9.718325e-02   p_joint 2.517241e-04

Joint ci ratio: 1.224846e-01	ci left: 2.361846e-04	ci right 2.672363e-04	k: 1023	n:4070000
Cons ci ratio: 5.922399e-03	ci left: 9.689348e-02	ci right 9.746926e-02	k: 395527	n:4070000
KS ci ratio: 9.133997e-02	ci left: 4.316697e-04	ci right 4.732233e-04	k: 1840	n:4070000
MLL3   4070000 perm   8335 sec   (488 perm/sec)   p_kst 4.520885e-04   p_cons 9.718108e-02   p_joint 2.513514e-04

Joint ci ratio: 1.223055e-01	ci left: 2.363185e-04	ci right 2.673391e-04	k: 1026	n:4080000
Cons ci ratio: 5.914673e-03	ci left: 9.690758e-02	ci right 9.748269e-02	k: 396555	n:4080000
KS ci ratio: 9.124091e-02	ci left: 4.315697e-04	ci right 4.730662e-04	k: 1844	n:4080000
MLL3   4080000 perm   8371 sec   (487 perm/sec)   p_kst 4.519608e-04   p_cons 9.719485e-02   p_joint 2.514706e-04

Joint ci ratio: 1.220680e-01	ci left: 2.366888e-04	ci right 2.676934e-04	k: 1030	n:4090000
Cons ci ratio: 5.907659e-03	ci left: 9.690135e-02	ci right 9.747574e-02	k: 397500	n:4090000
KS ci ratio: 9.119153e-02	ci left: 4.309924e-04	ci right 4.724097e-04	k: 1846	n:4090000
MLL3   4090000 perm   8407 sec   (486 perm/sec)   p_kst 4.513447e-04   p_cons 9.718826e-02   p_joint 2.518337e-04

Joint ci ratio: 1.219498e-01	ci left: 2.365845e-04	ci right 2.675431e-04	k: 1032	n:4100000
Cons ci ratio: 5.900236e-03	ci left: 9.690807e-02	ci right 9.748177e-02	k: 398498	n:4100000
KS ci ratio: 9.106834e-02	ci left: 4.311329e-04	ci right 4.725048e-04	k: 1851	n:4100000
MLL3   4100000 perm   8444 sec   (486 perm/sec)   p_kst 4.514634e-04   p_cons 9.719463e-02   p_joint 2.517073e-04

Joint ci ratio: 1.216557e-01	ci left: 2.371883e-04	ci right 2.681458e-04	k: 1037	n:4110000
Cons ci ratio: 5.892841e-03	ci left: 9.691475e-02	ci right 9.748777e-02	k: 399496	n:4110000
KS ci ratio: 9.094565e-02	ci left: 4.312728e-04	ci right 4.725993e-04	k: 1856	n:4110000
MLL3   4110000 perm   8481 sec   (485 perm/sec)   p_kst 4.515815e-04   p_cons 9.720097e-02   p_joint 2.523114e-04

Joint ci ratio: 1.214803e-01	ci left: 2.373186e-04	ci right 2.682452e-04	k: 1040	n:4120000
Cons ci ratio: 5.885832e-03	ci left: 9.691073e-02	ci right 9.748304e-02	k: 400450	n:4120000
KS ci ratio: 9.082345e-02	ci left: 4.314120e-04	ci right 4.726934e-04	k: 1861	n:4120000
MLL3   4120000 perm   8518 sec   (484 perm/sec)   p_kst 4.516990e-04   p_cons 9.719660e-02   p_joint 2.524272e-04

Joint ci ratio: 1.214220e-01	ci left: 2.369788e-04	ci right 2.678452e-04	k: 1041	n:4130000
Cons ci ratio: 5.878864e-03	ci left: 9.690625e-02	ci right 9.747785e-02	k: 401402	n:4130000
KS ci ratio: 9.075039e-02	ci left: 4.310773e-04	ci right 4.722918e-04	k: 1864	n:4130000
MLL3   4130000 perm   8554 sec   (483 perm/sec)   p_kst 4.513317e-04   p_cons 9.719177e-02   p_joint 2.520581e-04

Joint ci ratio: 1.211896e-01	ci left: 2.373432e-04	ci right 2.681937e-04	k: 1045	n:4140000
Cons ci ratio: 5.871339e-03	ci left: 9.691915e-02	ci right 9.749011e-02	k: 402426	n:4140000
KS ci ratio: 9.055634e-02	ci left: 4.319246e-04	ci right 4.731271e-04	k: 1872	n:4140000
MLL3   4140000 perm   8591 sec   (482 perm/sec)   p_kst 4.521739e-04   p_cons 9.720435e-02   p_joint 2.524155e-04

Joint ci ratio: 1.324305e-01	ci left: 1.971041e-04	ci right 2.252877e-04	k: 875	n:4150000
Cons ci ratio: 5.198151e-03	ci left: 1.202050e-01	ci right 1.208317e-01	k: 500150	n:4150000
KS ci ratio: 9.045980e-02	ci left: 4.318259e-04	ci right 4.729727e-04	k: 1876	n:4150000
MLL3   4150000 perm   8628 sec   (481 perm/sec)   p_kst 4.520482e-04   p_cons 1.205181e-01   p_joint 2.108434e-04

Joint ci ratio: 1.323550e-01	ci left: 1.968627e-04	ci right 2.249945e-04	k: 876	n:4160000
Cons ci ratio: 5.191376e-03	ci left: 1.202267e-01	ci right 1.208527e-01	k: 501444	n:4160000
KS ci ratio: 9.036358e-02	ci left: 4.317276e-04	ci right 4.728190e-04	k: 1880	n:4160000
MLL3   4160000 perm   8665 sec   (480 perm/sec)   p_kst 4.519231e-04   p_cons 1.205394e-01   p_joint 2.105769e-04

Joint ci ratio: 1.322796e-01	ci left: 1.966225e-04	ci right 2.247027e-04	k: 877	n:4170000
Cons ci ratio: 5.185103e-03	ci left: 1.202289e-01	ci right 1.208541e-01	k: 502657	n:4170000
KS ci ratio: 9.029162e-02	ci left: 4.313955e-04	ci right 4.724209e-04	k: 1883	n:4170000
MLL3   4170000 perm   8702 sec   (479 perm/sec)   p_kst 4.515588e-04   p_cons 1.205412e-01   p_joint 2.103118e-04

Joint ci ratio: 1.325821e-01	ci left: 1.952268e-04	ci right 2.231765e-04	k: 873	n:4180000
Cons ci ratio: 5.178870e-03	ci left: 1.202304e-01	ci right 1.208549e-01	k: 503867	n:4180000
KS ci ratio: 9.012432e-02	ci left: 4.320003e-04	ci right 4.730031e-04	k: 1890	n:4180000
MLL3   4180000 perm   8740 sec   (478 perm/sec)   p_kst 4.521531e-04   p_cons 1.205423e-01   p_joint 2.088517e-04

Joint ci ratio: 1.322797e-01	ci left: 1.956839e-04	ci right 2.236302e-04	k: 877	n:4190000
Cons ci ratio: 5.172666e-03	ci left: 1.202316e-01	ci right 1.208553e-01	k: 505076	n:4190000
KS ci ratio: 9.005293e-02	ci left: 4.316691e-04	ci right 4.726063e-04	k: 1893	n:4190000
MLL3   4190000 perm   8777 sec   (477 perm/sec)   p_kst 4.517900e-04   p_cons 1.205432e-01   p_joint 2.093079e-04

Joint ci ratio: 1.320543e-01	ci left: 1.959087e-04	ci right 2.238356e-04	k: 880	n:4200000
Cons ci ratio: 5.166391e-03	ci left: 1.202366e-01	ci right 1.208596e-01	k: 506301	n:4200000
KS ci ratio: 8.995799e-02	ci left: 4.315723e-04	ci right 4.724549e-04	k: 1897	n:4200000
MLL3   4200000 perm   8814 sec   (476 perm/sec)   p_kst 4.516667e-04   p_cons 1.205479e-01   p_joint 2.095238e-04

Joint ci ratio: 1.320543e-01	ci left: 1.954433e-04	ci right 2.233039e-04	k: 880	n:4210000
Cons ci ratio: 5.159884e-03	ci left: 1.202520e-01	ci right 1.208744e-01	k: 507570	n:4210000
KS ci ratio: 8.986336e-02	ci left: 4.314759e-04	ci right 4.723041e-04	k: 1901	n:4210000
MLL3   4210000 perm   8852 sec   (476 perm/sec)   p_kst 4.515439e-04   p_cons 1.205629e-01   p_joint 2.090261e-04

Joint ci ratio: 1.318300e-01	ci left: 1.956676e-04	ci right 2.235091e-04	k: 883	n:4220000
Cons ci ratio: 5.153460e-03	ci left: 1.202650e-01	ci right 1.208867e-01	k: 508829	n:4220000
KS ci ratio: 8.976902e-02	ci left: 4.313801e-04	ci right 4.721541e-04	k: 1905	n:4220000
MLL3   4220000 perm   8889 sec   (475 perm/sec)   p_kst 4.514218e-04   p_cons 1.205756e-01   p_joint 2.092417e-04

Joint ci ratio: 1.316069e-01	ci left: 1.958909e-04	ci right 2.237133e-04	k: 886	n:4230000
Cons ci ratio: 5.147501e-03	ci left: 1.202598e-01	ci right 1.208807e-01	k: 510011	n:4230000
KS ci ratio: 8.967497e-02	ci left: 4.312847e-04	ci right 4.720047e-04	k: 1909	n:4230000
MLL3   4230000 perm   8927 sec   (474 perm/sec)   p_kst 4.513002e-04   p_cons 1.205700e-01   p_joint 2.094563e-04

Joint ci ratio: 1.315328e-01	ci left: 1.956570e-04	ci right 2.234293e-04	k: 887	n:4240000
Cons ci ratio: 5.141174e-03	ci left: 1.202706e-01	ci right 1.208908e-01	k: 511261	n:4240000
KS ci ratio: 8.960465e-02	ci left: 4.309592e-04	ci right 4.716149e-04	k: 1912	n:4240000
MLL3   4240000 perm   8965 sec   (473 perm/sec)   p_kst 4.509434e-04   p_cons 1.205804e-01   p_joint 2.091981e-04

Joint ci ratio: 1.314588e-01	ci left: 1.954242e-04	ci right 2.231466e-04	k: 888	n:4250000
Cons ci ratio: 5.135024e-03	ci left: 1.202750e-01	ci right 1.208944e-01	k: 512484	n:4250000
KS ci ratio: 8.955787e-02	ci left: 4.304052e-04	ci right 4.709863e-04	k: 1914	n:4250000
MLL3   4250000 perm   9003 sec   (472 perm/sec)   p_kst 4.503529e-04   p_cons 1.205845e-01   p_joint 2.089412e-04

Joint ci ratio: 1.313850e-01	ci left: 1.951925e-04	ci right 2.228652e-04	k: 889	n:4260000
Cons ci ratio: 5.129032e-03	ci left: 1.202738e-01	ci right 1.208925e-01	k: 513683	n:4260000
KS ci ratio: 8.944118e-02	ci left: 4.305423e-04	ci right 4.710807e-04	k: 1919	n:4260000
MLL3   4260000 perm   9041 sec   (471 perm/sec)   p_kst 4.504695e-04   p_cons 1.205829e-01   p_joint 2.086854e-04

Joint ci ratio: 1.316813e-01	ci left: 1.938294e-04	ci right 2.213757e-04	k: 885	n:4270000
Cons ci ratio: 5.122812e-03	ci left: 1.202828e-01	ci right 1.209008e-01	k: 514926	n:4270000
KS ci ratio: 8.923224e-02	ci left: 4.315946e-04	ci right 4.721323e-04	k: 1928	n:4270000
MLL3   4270000 perm   9079 sec   (470 perm/sec)   p_kst 4.515222e-04   p_cons 1.205916e-01   p_joint 2.072600e-04

Joint ci ratio: 1.316071e-01	ci left: 1.936025e-04	ci right 2.210998e-04	k: 886	n:4280000
Cons ci ratio: 5.116689e-03	ci left: 1.202888e-01	ci right 1.209061e-01	k: 516156	n:4280000
KS ci ratio: 8.909377e-02	ci left: 4.319569e-04	ci right 4.724623e-04	k: 1934	n:4280000
MLL3   4280000 perm   9117 sec   (469 perm/sec)   p_kst 4.518692e-04   p_cons 1.205972e-01   p_joint 2.070093e-04

Joint ci ratio: 1.314589e-01	ci left: 1.936020e-04	ci right 2.210660e-04	k: 888	n:4290000
Cons ci ratio: 5.110654e-03	ci left: 1.202920e-01	ci right 1.209085e-01	k: 517374	n:4290000
KS ci ratio: 8.900183e-02	ci left: 4.318616e-04	ci right 4.723141e-04	k: 1938	n:4290000
MLL3   4290000 perm   9155 sec   (469 perm/sec)   p_kst 4.517483e-04   p_cons 1.206000e-01   p_joint 2.069930e-04

Joint ci ratio: 1.313113e-01	ci left: 1.936016e-04	ci right 2.210323e-04	k: 890	n:4300000
Cons ci ratio: 5.104602e-03	ci left: 1.202967e-01	ci right 1.209126e-01	k: 518599	n:4300000
KS ci ratio: 8.893308e-02	ci left: 4.315394e-04	ci right 4.719289e-04	k: 1941	n:4300000
MLL3   4300000 perm   9193 sec   (468 perm/sec)   p_kst 4.513953e-04   p_cons 1.206044e-01   p_joint 2.069767e-04

Joint ci ratio: 1.312377e-01	ci left: 1.933768e-04	ci right 2.207591e-04	k: 891	n:4310000
Cons ci ratio: 5.098465e-03	ci left: 1.203059e-01	ci right 1.209211e-01	k: 519843	n:4310000
KS ci ratio: 8.881880e-02	ci left: 4.316725e-04	ci right 4.720198e-04	k: 1946	n:4310000
MLL3   4310000 perm   9231 sec   (467 perm/sec)   p_kst 4.515081e-04   p_cons 1.206132e-01   p_joint 2.067285e-04

Joint ci ratio: 1.310908e-01	ci left: 1.933770e-04	ci right 2.207262e-04	k: 893	n:4320000
Cons ci ratio: 5.092750e-03	ci left: 1.202984e-01	ci right 1.209128e-01	k: 521015	n:4320000
KS ci ratio: 8.872771e-02	ci left: 4.315786e-04	ci right 4.718737e-04	k: 1950	n:4320000
MLL3   4320000 perm   9269 sec   (466 perm/sec)   p_kst 4.513889e-04   p_cons 1.206053e-01   p_joint 2.067130e-04

Joint ci ratio: 1.310176e-01	ci left: 1.931537e-04	ci right 2.204550e-04	k: 894	n:4330000
Cons ci ratio: 5.086944e-03	ci left: 1.202955e-01	ci right 1.209092e-01	k: 522207	n:4330000
KS ci ratio: 8.868230e-02	ci left: 4.310335e-04	ci right 4.712560e-04	k: 1952	n:4330000
MLL3   4330000 perm   9308 sec   (465 perm/sec)   p_kst 4.508083e-04   p_cons 1.206021e-01   p_joint 2.064665e-04

Joint ci ratio: 1.308714e-01	ci left: 1.931544e-04	ci right 2.204229e-04	k: 896	n:4340000
Cons ci ratio: 5.080981e-03	ci left: 1.203000e-01	ci right 1.209130e-01	k: 523431	n:4340000
KS ci ratio: 8.856899e-02	ci left: 4.311669e-04	ci right 4.713478e-04	k: 1957	n:4340000
MLL3   4340000 perm   9347 sec   (464 perm/sec)   p_kst 4.509217e-04   p_cons 1.206062e-01   p_joint 2.064516e-04

Joint ci ratio: 1.328871e-01	ci left: 1.867082e-04	ci right 2.135047e-04	k: 869	n:4350000
Cons ci ratio: 5.074950e-03	ci left: 1.203081e-01	ci right 1.209204e-01	k: 524671	n:4350000
KS ci ratio: 8.847866e-02	ci left: 4.310749e-04	ci right 4.712041e-04	k: 1961	n:4350000
MLL3   4350000 perm   9386 sec   (463 perm/sec)   p_kst 4.508046e-04   p_cons 1.206140e-01   p_joint 1.997701e-04

Joint ci ratio: 1.327347e-01	ci left: 1.867235e-04	ci right 2.134890e-04	k: 871	n:4360000
Cons ci ratio: 5.069100e-03	ci left: 1.203096e-01	ci right 1.209212e-01	k: 525882	n:4360000
KS ci ratio: 8.834367e-02	ci left: 4.314319e-04	ci right 4.715299e-04	k: 1967	n:4360000
MLL3   4360000 perm   9425 sec   (463 perm/sec)   p_kst 4.511468e-04   p_cons 1.206151e-01   p_joint 1.997706e-04

Joint ci ratio: 1.325069e-01	ci left: 1.869599e-04	ci right 2.137097e-04	k: 874	n:4370000
Cons ci ratio: 5.063194e-03	ci left: 1.203142e-01	ci right 1.209252e-01	k: 527107	n:4370000
KS ci ratio: 8.829884e-02	ci left: 4.308922e-04	ci right 4.709187e-04	k: 1969	n:4370000
MLL3   4370000 perm   9464 sec   (462 perm/sec)   p_kst 4.505721e-04   p_cons 1.206195e-01   p_joint 2.000000e-04

Joint ci ratio: 1.331938e-01	ci left: 1.845465e-04	ci right 2.110987e-04	k: 865	n:4380000
Cons ci ratio: 5.057058e-03	ci left: 1.203294e-01	ci right 1.209396e-01	k: 528378	n:4380000
KS ci ratio: 8.827647e-02	ci left: 4.301317e-04	ci right 4.700769e-04	k: 1970	n:4380000
MLL3   4380000 perm   9503 sec   (461 perm/sec)   p_kst 4.497717e-04   p_cons 1.206342e-01   p_joint 1.974886e-04

Joint ci ratio: 1.330403e-01	ci left: 1.845666e-04	ci right 2.110886e-04	k: 867	n:4390000
Cons ci ratio: 5.051341e-03	ci left: 1.203278e-01	ci right 1.209374e-01	k: 529576	n:4390000
KS ci ratio: 8.814240e-02	ci left: 4.304885e-04	ci right 4.704030e-04	k: 1976	n:4390000
MLL3   4390000 perm   9542 sec   (460 perm/sec)   p_kst 4.501139e-04   p_cons 1.206323e-01   p_joint 1.974943e-04

Joint ci ratio: 1.330403e-01	ci left: 1.841471e-04	ci right 2.106089e-04	k: 867	n:4400000
Cons ci ratio: 5.045588e-03	ci left: 1.203285e-01	ci right 1.209374e-01	k: 530784	n:4400000
KS ci ratio: 8.798674e-02	ci left: 4.310660e-04	ci right 4.709598e-04	k: 1983	n:4400000
MLL3   4400000 perm   9581 sec   (459 perm/sec)   p_kst 4.506818e-04   p_cons 1.206327e-01   p_joint 1.970455e-04

Joint ci ratio: 1.167014e-01	ci left: 2.408531e-04	ci right 2.709205e-04	k: 1127	n:4410000
Cons ci ratio: 5.040125e-03	ci left: 1.203179e-01	ci right 1.209261e-01	k: 531942	n:4410000
KS ci ratio: 8.787608e-02	ci left: 4.311974e-04	ci right 4.710506e-04	k: 1988	n:4410000
MLL3   4410000 perm   9620 sec   (458 perm/sec)   p_kst 4.507937e-04   p_cons 1.206218e-01   p_joint 2.555556e-04

Joint ci ratio: 1.168569e-01	ci left: 2.396493e-04	ci right 2.696091e-04	k: 1124	n:4420000
Cons ci ratio: 5.034555e-03	ci left: 1.203126e-01	ci right 1.209200e-01	k: 533123	n:4420000
KS ci ratio: 8.778785e-02	ci left: 4.311069e-04	ci right 4.709097e-04	k: 1992	n:4420000
MLL3   4420000 perm   9659 sec   (458 perm/sec)   p_kst 4.506787e-04   p_cons 1.206161e-01   p_joint 2.542986e-04

Joint ci ratio: 1.166497e-01	ci left: 2.399849e-04	ci right 2.699297e-04	k: 1128	n:4430000
Cons ci ratio: 5.028897e-03	ci left: 1.203118e-01	ci right 1.209185e-01	k: 534324	n:4430000
KS ci ratio: 8.759026e-02	ci left: 4.321208e-04	ci right 4.719228e-04	k: 2001	n:4430000
MLL3   4430000 perm   9699 sec   (457 perm/sec)   p_kst 4.516930e-04   p_cons 1.206149e-01   p_joint 2.546275e-04

Joint ci ratio: 1.163922e-01	ci left: 2.405377e-04	ci right 2.704807e-04	k: 1133	n:4440000
Cons ci ratio: 5.023237e-03	ci left: 1.203118e-01	ci right 1.209179e-01	k: 535529	n:4440000
KS ci ratio: 8.737227e-02	ci left: 4.333506e-04	ci right 4.731615e-04	k: 2011	n:4440000
MLL3   4440000 perm   9738 sec   (456 perm/sec)   p_kst 4.529279e-04   p_cons 1.206146e-01   p_joint 2.551802e-04

Joint ci ratio: 1.161875e-01	ci left: 2.408699e-04	ci right 2.707979e-04	k: 1137	n:4450000
Cons ci ratio: 5.017559e-03	ci left: 1.203135e-01	ci right 1.209189e-01	k: 536741	n:4450000
KS ci ratio: 8.722065e-02	ci left: 4.339155e-04	ci right 4.737055e-04	k: 2018	n:4450000
MLL3   4450000 perm   9777 sec   (455 perm/sec)   p_kst 4.534831e-04   p_cons 1.206160e-01   p_joint 2.555056e-04

Joint ci ratio: 1.159330e-01	ci left: 2.414184e-04	ci right 2.713443e-04	k: 1142	n:4460000
Cons ci ratio: 5.012175e-03	ci left: 1.203035e-01	ci right 1.209082e-01	k: 537901	n:4460000
KS ci ratio: 8.709132e-02	ci left: 4.342585e-04	ci right 4.740180e-04	k: 2024	n:4460000
MLL3   4460000 perm   9817 sec   (454 perm/sec)   p_kst 4.538117e-04   p_cons 1.206056e-01   p_joint 2.560538e-04

Joint ci ratio: 1.157307e-01	ci left: 2.417472e-04	ci right 2.716581e-04	k: 1146	n:4470000
Cons ci ratio: 5.006460e-03	ci left: 1.203083e-01	ci right 1.209123e-01	k: 539127	n:4470000
KS ci ratio: 8.700544e-02	ci left: 4.341624e-04	ci right 4.738719e-04	k: 2028	n:4470000
MLL3   4470000 perm   9856 sec   (454 perm/sec)   p_kst 4.536913e-04   p_cons 1.206101e-01   p_joint 2.563758e-04

Joint ci ratio: 1.156803e-01	ci left: 2.414243e-04	ci right 2.712814e-04	k: 1147	n:4480000
Cons ci ratio: 5.000828e-03	ci left: 1.203104e-01	ci right 1.209138e-01	k: 540341	n:4480000
KS ci ratio: 8.696262e-02	ci left: 4.336300e-04	ci right 4.732703e-04	k: 2030	n:4480000
MLL3   4480000 perm   9895 sec   (453 perm/sec)   p_kst 4.531250e-04   p_cons 1.206118e-01   p_joint 2.560268e-04

Joint ci ratio: 1.160856e-01	ci left: 2.391565e-04	ci right 2.688438e-04	k: 1139	n:4490000
Cons ci ratio: 4.995362e-03	ci left: 1.203062e-01	ci right 1.209089e-01	k: 541527	n:4490000
KS ci ratio: 8.687711e-02	ci left: 4.335357e-04	ci right 4.731265e-04	k: 2034	n:4490000
MLL3   4490000 perm   9935 sec   (452 perm/sec)   p_kst 4.530067e-04   p_cons 1.206073e-01   p_joint 2.536748e-04

Joint ci ratio: 1.160348e-01	ci left: 2.388409e-04	ci right 2.684751e-04	k: 1140	n:4500000
Cons ci ratio: 4.989730e-03	ci left: 1.203099e-01	ci right 1.209119e-01	k: 542748	n:4500000
KS ci ratio: 8.681316e-02	ci left: 4.332245e-04	ci right 4.727562e-04	k: 2037	n:4500000
MLL3   4500000 perm   9974 sec   (451 perm/sec)   p_kst 4.526667e-04   p_cons 1.206107e-01   p_joint 2.533333e-04

Joint ci ratio: 1.157813e-01	ci left: 2.393878e-04	ci right 2.690206e-04	k: 1145	n:4510000
Cons ci ratio: 4.983894e-03	ci left: 1.203231e-01	ci right 1.209244e-01	k: 544012	n:4510000
KS ci ratio: 8.670686e-02	ci left: 4.333485e-04	ci right 4.728407e-04	k: 2042	n:4510000
MLL3   4510000 perm   10014 sec   (450 perm/sec)   p_kst 4.527716e-04   p_cons 1.206235e-01   p_joint 2.538803e-04

Joint ci ratio: 1.157814e-01	ci left: 2.388582e-04	ci right 2.684254e-04	k: 1145	n:4520000
Cons ci ratio: 4.978457e-03	ci left: 1.203200e-01	ci right 1.209207e-01	k: 545203	n:4520000
KS ci ratio: 8.666447e-02	ci left: 4.328227e-04	ci right 4.722466e-04	k: 2044	n:4520000
MLL3   4520000 perm   10053 sec   (450 perm/sec)   p_kst 4.522124e-04   p_cons 1.206201e-01   p_joint 2.533186e-04

Joint ci ratio: 1.156805e-01	ci left: 2.387596e-04	ci right 2.682871e-04	k: 1147	n:4530000
Cons ci ratio: 4.973089e-03	ci left: 1.203148e-01	ci right 1.209148e-01	k: 546384	n:4530000
KS ci ratio: 8.660099e-02	ci left: 4.325151e-04	ci right 4.718807e-04	k: 2047	n:4530000
MLL3   4530000 perm   10093 sec   (449 perm/sec)   p_kst 4.518764e-04   p_cons 1.206146e-01   p_joint 2.532009e-04

Joint ci ratio: 1.156301e-01	ci left: 2.384476e-04	ci right 2.679228e-04	k: 1148	n:4540000
Cons ci ratio: 4.967661e-03	ci left: 1.203129e-01	ci right 1.209123e-01	k: 547580	n:4540000
KS ci ratio: 8.647440e-02	ci left: 4.328554e-04	ci right 4.721915e-04	k: 2053	n:4540000
MLL3   4540000 perm   10133 sec   (448 perm/sec)   p_kst 4.522026e-04   p_cons 1.206123e-01   p_joint 2.528634e-04

Joint ci ratio: 1.152795e-01	ci left: 2.394176e-04	ci right 2.689168e-04	k: 1155	n:4550000
Cons ci ratio: 4.962375e-03	ci left: 1.203057e-01	ci right 1.209044e-01	k: 548752	n:4550000
KS ci ratio: 8.632740e-02	ci left: 4.334093e-04	ci right 4.727254e-04	k: 2060	n:4550000
MLL3   4550000 perm   10173 sec   (447 perm/sec)   p_kst 4.527473e-04   p_cons 1.206048e-01   p_joint 2.538462e-04

Joint ci ratio: 1.151302e-01	ci left: 2.395315e-04	ci right 2.690039e-04	k: 1158	n:4560000
Cons ci ratio: 4.956880e-03	ci left: 1.203082e-01	ci right 1.209063e-01	k: 549968	n:4560000
KS ci ratio: 8.620200e-02	ci left: 4.337463e-04	ci right 4.730329e-04	k: 2066	n:4560000
MLL3   4560000 perm   10213 sec   (446 perm/sec)   p_kst 4.530702e-04   p_cons 1.206070e-01   p_joint 2.539474e-04

Joint ci ratio: 1.182320e-01	ci left: 2.262612e-04	ci right 2.549034e-04	k: 1098	n:4570000
Cons ci ratio: 4.951678e-03	ci left: 1.202989e-01	ci right 1.208963e-01	k: 551130	n:4570000
KS ci ratio: 8.599418e-02	ci left: 4.349382e-04	ci right 4.742331e-04	k: 2076	n:4570000
MLL3   4570000 perm   10253 sec   (446 perm/sec)   p_kst 4.542670e-04   p_cons 1.205974e-01   p_joint 2.402626e-04

Joint ci ratio: 1.180174e-01	ci left: 2.266148e-04	ci right 2.552460e-04	k: 1102	n:4580000
Cons ci ratio: 4.946321e-03	ci left: 1.202971e-01	ci right 1.208938e-01	k: 552326	n:4580000
KS ci ratio: 8.589085e-02	ci left: 4.350568e-04	ci right 4.743128e-04	k: 2081	n:4580000
MLL3   4580000 perm   10294 sec   (445 perm/sec)   p_kst 4.543668e-04   p_cons 1.205952e-01   p_joint 2.406114e-04

Joint ci ratio: 1.178039e-01	ci left: 2.269668e-04	ci right 2.555870e-04	k: 1106	n:4590000
Cons ci ratio: 4.941137e-03	ci left: 1.202885e-01	ci right 1.208845e-01	k: 553491	n:4590000
KS ci ratio: 8.574681e-02	ci left: 4.356013e-04	ci right 4.748372e-04	k: 2088	n:4590000
MLL3   4590000 perm   10335 sec   (444 perm/sec)   p_kst 4.549020e-04   p_cons 1.205863e-01   p_joint 2.409586e-04

Joint ci ratio: 1.177508e-01	ci left: 2.266844e-04	ci right 2.552552e-04	k: 1107	n:4600000
Cons ci ratio: 4.935894e-03	ci left: 1.202832e-01	ci right 1.208786e-01	k: 554671	n:4600000
KS ci ratio: 8.566483e-02	ci left: 4.355053e-04	ci right 4.746932e-04	k: 2092	n:4600000
MLL3   4600000 perm   10375 sec   (443 perm/sec)   p_kst 4.547826e-04   p_cons 1.205807e-01   p_joint 2.406522e-04

Joint ci ratio: 1.283909e-01	ci left: 1.891877e-04	ci right 2.153514e-04	k: 931	n:4610000
Cons ci ratio: 5.233539e-03	ci left: 1.082097e-01	ci right 1.087777e-01	k: 500155	n:4610000
KS ci ratio: 8.562396e-02	ci left: 4.349851e-04	ci right 4.741066e-04	k: 2094	n:4610000
MLL3   4610000 perm   10415 sec   (443 perm/sec)   p_kst 4.542299e-04   p_cons 1.084935e-01   p_joint 2.019523e-04

Joint ci ratio: 1.281847e-01	ci left: 1.894067e-04	ci right 2.155554e-04	k: 934	n:4620000
Cons ci ratio: 5.227632e-03	ci left: 1.082189e-01	ci right 1.087863e-01	k: 501281	n:4620000
KS ci ratio: 8.550160e-02	ci left: 4.353145e-04	ci right 4.744069e-04	k: 2100	n:4620000
MLL3   4620000 perm   10456 sec   (442 perm/sec)   p_kst 4.545455e-04   p_cons 1.085024e-01   p_joint 2.021645e-04

Joint ci ratio: 1.281162e-01	ci left: 1.892067e-04	ci right 2.153128e-04	k: 935	n:4630000
Cons ci ratio: 5.221698e-03	ci left: 1.082298e-01	ci right 1.087966e-01	k: 502415	n:4630000
KS ci ratio: 8.542033e-02	ci left: 4.352198e-04	ci right 4.742646e-04	k: 2104	n:4630000
MLL3   4630000 perm   10497 sec   (441 perm/sec)   p_kst 4.544276e-04   p_cons 1.085130e-01   p_joint 2.019438e-04

Joint ci ratio: 1.279796e-01	ci left: 1.892161e-04	ci right 2.152936e-04	k: 937	n:4640000
Cons ci ratio: 5.216087e-03	ci left: 1.082294e-01	ci right 1.087956e-01	k: 503497	n:4640000
KS ci ratio: 8.527863e-02	ci left: 4.357583e-04	ci right 4.747833e-04	k: 2111	n:4640000
MLL3   4640000 perm   10537 sec   (440 perm/sec)   p_kst 4.549569e-04   p_cons 1.085123e-01   p_joint 2.019397e-04

Joint ci ratio: 1.278434e-01	ci left: 1.892255e-04	ci right 2.152744e-04	k: 939	n:4650000
Cons ci ratio: 5.210643e-03	ci left: 1.082235e-01	ci right 1.087891e-01	k: 504553	n:4650000
KS ci ratio: 8.519799e-02	ci left: 4.356630e-04	ci right 4.746408e-04	k: 2115	n:4650000
MLL3   4650000 perm   10578 sec   (440 perm/sec)   p_kst 4.548387e-04   p_cons 1.085060e-01   p_joint 2.019355e-04

Joint ci ratio: 1.276398e-01	ci left: 1.894427e-04	ci right 2.154768e-04	k: 942	n:4660000
Cons ci ratio: 5.205743e-03	ci left: 1.081980e-01	ci right 1.087630e-01	k: 505518	n:4660000
KS ci ratio: 8.503736e-02	ci left: 4.364083e-04	ci right 4.753756e-04	k: 2123	n:4660000
MLL3   4660000 perm   10619 sec   (439 perm/sec)   p_kst 4.555794e-04   p_cons 1.084803e-01   p_joint 2.021459e-04

Joint ci ratio: 1.276399e-01	ci left: 1.890370e-04	ci right 2.150154e-04	k: 942	n:4670000
Cons ci ratio: 5.199975e-03	ci left: 1.082054e-01	ci right 1.087698e-01	k: 506636	n:4670000
KS ci ratio: 8.491749e-02	ci left: 4.367313e-04	ci right 4.756697e-04	k: 2129	n:4670000
MLL3   4670000 perm   10660 sec   (438 perm/sec)   p_kst 4.558887e-04   p_cons 1.084874e-01   p_joint 2.017131e-04

Joint ci ratio: 1.276399e-01	ci left: 1.886331e-04	ci right 2.145560e-04	k: 942	n:4680000
Cons ci ratio: 5.194537e-03	ci left: 1.082013e-01	ci right 1.087650e-01	k: 507700	n:4680000
KS ci ratio: 8.481799e-02	ci left: 4.368438e-04	ci right 4.757444e-04	k: 2134	n:4680000
MLL3   4680000 perm   10701 sec   (437 perm/sec)   p_kst 4.559829e-04   p_cons 1.084829e-01   p_joint 2.012821e-04

Joint ci ratio: 1.292962e-01	ci left: 1.832780e-04	ci right 2.088169e-04	k: 918	n:4690000
Cons ci ratio: 5.188955e-03	ci left: 1.082031e-01	ci right 1.087662e-01	k: 508792	n:4690000
KS ci ratio: 8.473866e-02	ci left: 4.367472e-04	ci right 4.756009e-04	k: 2138	n:4690000
MLL3   4690000 perm   10743 sec   (437 perm/sec)   p_kst 4.558635e-04   p_cons 1.084844e-01   p_joint 1.957356e-04

Joint ci ratio: 1.290856e-01	ci left: 1.835058e-04	ci right 2.090315e-04	k: 921	n:4700000
Cons ci ratio: 5.183539e-03	ci left: 1.081994e-01	ci right 1.087619e-01	k: 509858	n:4700000
KS ci ratio: 8.463979e-02	ci left: 4.368593e-04	ci right 4.756754e-04	k: 2143	n:4700000
MLL3   4700000 perm   10784 sec   (436 perm/sec)   p_kst 4.559574e-04   p_cons 1.084804e-01   p_joint 1.959574e-04

Joint ci ratio: 1.287370e-01	ci left: 1.841435e-04	ci right 2.096835e-04	k: 926	n:4710000
Cons ci ratio: 5.178135e-03	ci left: 1.081959e-01	ci right 1.087578e-01	k: 510925	n:4710000
KS ci ratio: 8.452159e-02	ci left: 4.371787e-04	ci right 4.759663e-04	k: 2149	n:4710000
MLL3   4710000 perm   10826 sec   (435 perm/sec)   p_kst 4.562633e-04   p_cons 1.084766e-01   p_joint 1.966030e-04

Joint ci ratio: 1.285984e-01	ci left: 1.841634e-04	ci right 2.096766e-04	k: 928	n:4720000
Cons ci ratio: 5.172509e-03	ci left: 1.082014e-01	ci right 1.087627e-01	k: 512034	n:4720000
KS ci ratio: 8.446269e-02	ci left: 4.368746e-04	ci right 4.756069e-04	k: 2152	n:4720000
MLL3   4720000 perm   10868 sec   (434 perm/sec)   p_kst 4.559322e-04   p_cons 1.084818e-01   p_joint 1.966102e-04

Joint ci ratio: 1.285984e-01	ci left: 1.837741e-04	ci right 2.092333e-04	k: 928	n:4730000
Cons ci ratio: 5.166958e-03	ci left: 1.082046e-01	ci right 1.087654e-01	k: 513133	n:4730000
KS ci ratio: 8.430618e-02	ci left: 4.376066e-04	ci right 4.763284e-04	k: 2160	n:4730000
MLL3   4730000 perm   10909 sec   (434 perm/sec)   p_kst 4.566596e-04   p_cons 1.084848e-01   p_joint 1.961945e-04

Joint ci ratio: 1.284602e-01	ci left: 1.837948e-04	ci right 2.092274e-04	k: 930	n:4740000
Cons ci ratio: 5.161290e-03	ci left: 1.082130e-01	ci right 1.087731e-01	k: 514256	n:4740000
KS ci ratio: 8.424774e-02	ci left: 4.373030e-04	ci right 4.759697e-04	k: 2163	n:4740000
MLL3   4740000 perm   10951 sec   (433 perm/sec)   p_kst 4.563291e-04   p_cons 1.084928e-01   p_joint 1.962025e-04

Joint ci ratio: 1.284602e-01	ci left: 1.834078e-04	ci right 2.087869e-04	k: 930	n:4750000
Cons ci ratio: 5.156039e-03	ci left: 1.082064e-01	ci right 1.087659e-01	k: 515308	n:4750000
KS ci ratio: 8.422831e-02	ci left: 4.365884e-04	ci right 4.751826e-04	k: 2164	n:4750000
MLL3   4750000 perm   10993 sec   (432 perm/sec)   p_kst 4.555789e-04   p_cons 1.084859e-01   p_joint 1.957895e-04

Joint ci ratio: 1.283913e-01	ci left: 1.832258e-04	ci right 2.085651e-04	k: 931	n:4760000
Cons ci ratio: 5.150726e-03	ci left: 1.082027e-01	ci right 1.087617e-01	k: 516374	n:4760000
KS ci ratio: 8.418945e-02	ci left: 4.360826e-04	ci right 4.746134e-04	k: 2166	n:4760000
MLL3   4760000 perm   11035 sec   (431 perm/sec)   p_kst 4.550420e-04   p_cons 1.084819e-01   p_joint 1.955882e-04

Joint ci ratio: 1.286678e-01	ci left: 1.820301e-04	ci right 2.072624e-04	k: 927	n:4770000
Cons ci ratio: 5.145429e-03	ci left: 1.081990e-01	ci right 1.087574e-01	k: 517440	n:4770000
KS ci ratio: 8.399582e-02	ci left: 4.372207e-04	ci right 4.757589e-04	k: 2176	n:4770000
MLL3   4770000 perm   11076 sec   (431 perm/sec)   p_kst 4.561845e-04   p_cons 1.084780e-01   p_joint 1.943396e-04

Joint ci ratio: 1.283913e-01	ci left: 1.824592e-04	ci right 2.076925e-04	k: 931	n:4780000
Cons ci ratio: 5.140282e-03	ci left: 1.081904e-01	ci right 1.087482e-01	k: 518482	n:4780000
KS ci ratio: 8.391877e-02	ci left: 4.371253e-04	ci right 4.756180e-04	k: 2180	n:4780000
MLL3   4780000 perm   11119 sec   (430 perm/sec)   p_kst 4.560669e-04   p_cons 1.084690e-01   p_joint 1.947699e-04

Joint ci ratio: 1.283225e-01	ci left: 1.822804e-04	ci right 2.074744e-04	k: 932	n:4790000
Cons ci ratio: 5.134812e-03	ci left: 1.081945e-01	ci right 1.087517e-01	k: 519585	n:4790000
KS ci ratio: 8.378440e-02	ci left: 4.376434e-04	ci right 4.761170e-04	k: 2187	n:4790000
MLL3   4790000 perm   11160 sec   (429 perm/sec)   p_kst 4.565762e-04   p_cons 1.084729e-01   p_joint 1.945720e-04

Joint ci ratio: 1.280483e-01	ci left: 1.827072e-04	ci right 2.079022e-04	k: 936	n:4800000
Cons ci ratio: 5.129630e-03	ci left: 1.081884e-01	ci right 1.087450e-01	k: 520639	n:4800000
KS ci ratio: 8.361257e-02	ci left: 4.385674e-04	ci right 4.770393e-04	k: 2196	n:4800000
MLL3   4800000 perm   11202 sec   (428 perm/sec)   p_kst 4.575000e-04   p_cons 1.084665e-01   p_joint 1.950000e-04

Joint ci ratio: 1.278438e-01	ci left: 1.829311e-04	ci right 2.081136e-04	k: 939	n:4810000
Cons ci ratio: 5.124657e-03	ci left: 1.081751e-01	ci right 1.087310e-01	k: 521658	n:4810000
KS ci ratio: 8.353657e-02	ci left: 4.384699e-04	ci right 4.768966e-04	k: 2200	n:4810000
MLL3   4810000 perm   11245 sec   (428 perm/sec)   p_kst 4.573805e-04   p_cons 1.084528e-01   p_joint 1.952183e-04

Joint ci ratio: 1.277759e-01	ci left: 1.827524e-04	ci right 2.078959e-04	k: 940	n:4820000
Cons ci ratio: 5.119385e-03	ci left: 1.081736e-01	ci right 1.087290e-01	k: 522734	n:4820000
KS ci ratio: 8.338513e-02	ci left: 4.391853e-04	ci right 4.776015e-04	k: 2208	n:4820000
MLL3   4820000 perm   11287 sec   (427 perm/sec)   p_kst 4.580913e-04   p_cons 1.084510e-01   p_joint 1.950207e-04

Joint ci ratio: 1.277080e-01	ci left: 1.825745e-04	ci right 2.076791e-04	k: 941	n:4830000
Cons ci ratio: 5.114239e-03	ci left: 1.081680e-01	ci right 1.087228e-01	k: 523790	n:4830000
KS ci ratio: 8.334743e-02	ci left: 4.386815e-04	ci right 4.770354e-04	k: 2210	n:4830000
MLL3   4830000 perm   11328 sec   (426 perm/sec)   p_kst 4.575569e-04   p_cons 1.084451e-01   p_joint 1.948240e-04

Joint ci ratio: 1.277081e-01	ci left: 1.821972e-04	ci right 2.072501e-04	k: 941	n:4840000
Cons ci ratio: 5.109124e-03	ci left: 1.081618e-01	ci right 1.087160e-01	k: 524843	n:4840000
KS ci ratio: 8.327215e-02	ci left: 4.385843e-04	ci right 4.768935e-04	k: 2214	n:4840000
MLL3   4840000 perm   11370 sec   (426 perm/sec)   p_kst 4.574380e-04   p_cons 1.084386e-01   p_joint 1.944215e-04

Joint ci ratio: 1.276403e-01	ci left: 1.820212e-04	ci right 2.070355e-04	k: 942	n:4850000
Cons ci ratio: 5.103944e-03	ci left: 1.081587e-01	ci right 1.087123e-01	k: 525911	n:4850000
KS ci ratio: 8.323460e-02	ci left: 4.380838e-04	ci right 4.763311e-04	k: 2216	n:4850000
MLL3   4850000 perm   11413 sec   (425 perm/sec)   p_kst 4.569072e-04   p_cons 1.084353e-01   p_joint 1.942268e-04

Joint ci ratio: 1.275727e-01	ci left: 1.818458e-04	ci right 2.068218e-04	k: 943	n:4860000
Cons ci ratio: 5.098654e-03	ci left: 1.081603e-01	ci right 1.087134e-01	k: 527002	n:4860000
KS ci ratio: 8.317835e-02	ci left: 4.377868e-04	ci right 4.759812e-04	k: 2219	n:4860000
MLL3   4860000 perm   11455 sec   (424 perm/sec)   p_kst 4.565844e-04   p_cons 1.084366e-01   p_joint 1.940329e-04

Joint ci ratio: 1.291562e-01	ci left: 1.769013e-04	ci right 2.015228e-04	k: 920	n:4870000
Cons ci ratio: 5.093278e-03	ci left: 1.081659e-01	ci right 1.087184e-01	k: 528112	n:4870000
KS ci ratio: 8.312222e-02	ci left: 4.374911e-04	ci right 4.756326e-04	k: 2222	n:4870000
MLL3   4870000 perm   11498 sec   (424 perm/sec)   p_kst 4.562628e-04   p_cons 1.084419e-01   p_joint 1.889117e-04

Joint ci ratio: 1.291562e-01	ci left: 1.765388e-04	ci right 2.011099e-04	k: 920	n:4880000
Cons ci ratio: 5.088178e-03	ci left: 1.081616e-01	ci right 1.087135e-01	k: 529174	n:4880000
KS ci ratio: 8.308488e-02	ci left: 4.369959e-04	ci right 4.750763e-04	k: 2224	n:4880000
MLL3   4880000 perm   11539 sec   (423 perm/sec)   p_kst 4.557377e-04   p_cons 1.084373e-01   p_joint 1.885246e-04

Joint ci ratio: 1.291562e-01	ci left: 1.761777e-04	ci right 2.006986e-04	k: 920	n:4890000
Cons ci ratio: 5.082948e-03	ci left: 1.081628e-01	ci right 1.087142e-01	k: 530263	n:4890000
KS ci ratio: 8.301030e-02	ci left: 4.369033e-04	ci right 4.749398e-04	k: 2228	n:4890000
MLL3   4890000 perm   11582 sec   (422 perm/sec)   p_kst 4.556237e-04   p_cons 1.084382e-01   p_joint 1.881391e-04

Joint ci ratio: 1.093822e-01	ci left: 2.477054e-04	ci right 2.765640e-04	k: 1283	n:4900000
Cons ci ratio: 5.077524e-03	ci left: 1.081720e-01	ci right 1.087228e-01	k: 531391	n:4900000
KS ci ratio: 8.293592e-02	ci left: 4.368110e-04	ci right 4.748038e-04	k: 2232	n:4900000
MLL3   4900000 perm   11625 sec   (422 perm/sec)   p_kst 4.555102e-04   p_cons 1.084471e-01   p_joint 2.618367e-04

Joint ci ratio: 1.093396e-01	ci left: 2.473990e-04	ci right 2.762100e-04	k: 1284	n:4910000
Cons ci ratio: 5.072375e-03	ci left: 1.081713e-01	ci right 1.087216e-01	k: 532471	n:4910000
KS ci ratio: 8.284322e-02	ci left: 4.369186e-04	ci right 4.748762e-04	k: 2237	n:4910000
MLL3   4910000 perm   11667 sec   (421 perm/sec)   p_kst 4.556008e-04   p_cons 1.084462e-01   p_joint 2.615071e-04

Joint ci ratio: 1.093397e-01	ci left: 2.468961e-04	ci right 2.756486e-04	k: 1284	n:4920000
Cons ci ratio: 5.067146e-03	ci left: 1.081744e-01	ci right 1.087241e-01	k: 533569	n:4920000
KS ci ratio: 8.276929e-02	ci left: 4.368267e-04	ci right 4.747408e-04	k: 2241	n:4920000
MLL3   4920000 perm   11710 sec   (420 perm/sec)   p_kst 4.554878e-04   p_cons 1.084490e-01   p_joint 2.609756e-04

Joint ci ratio: 1.092972e-01	ci left: 2.465926e-04	ci right 2.752978e-04	k: 1285	n:4930000
Cons ci ratio: 5.062022e-03	ci left: 1.081739e-01	ci right 1.087231e-01	k: 534650	n:4930000
KS ci ratio: 8.269556e-02	ci left: 4.367352e-04	ci right 4.746060e-04	k: 2245	n:4930000
MLL3   4930000 perm   11753 sec   (419 perm/sec)   p_kst 4.553753e-04   p_cons 1.084483e-01   p_joint 2.606491e-04

Joint ci ratio: 1.091699e-01	ci left: 2.466842e-04	ci right 2.753644e-04	k: 1288	n:4940000
Cons ci ratio: 5.056862e-03	ci left: 1.081755e-01	ci right 1.087241e-01	k: 535741	n:4940000
KS ci ratio: 8.262203e-02	ci left: 4.366441e-04	ci right 4.744717e-04	k: 2249	n:4940000
MLL3   4940000 perm   11795 sec   (419 perm/sec)   p_kst 4.552632e-04   p_cons 1.084496e-01   p_joint 2.607287e-04

Joint ci ratio: 1.091276e-01	ci left: 2.463823e-04	ci right 2.750157e-04	k: 1289	n:4950000
Cons ci ratio: 5.051532e-03	ci left: 1.081842e-01	ci right 1.087322e-01	k: 536867	n:4950000
KS ci ratio: 8.251207e-02	ci left: 4.369491e-04	ci right 4.747503e-04	k: 2255	n:4950000
MLL3   4950000 perm   11839 sec   (418 perm/sec)   p_kst 4.555556e-04   p_cons 1.084580e-01   p_joint 2.604040e-04

Joint ci ratio: 1.089588e-01	ci left: 2.466700e-04	ci right 2.752896e-04	k: 1293	n:4960000
Cons ci ratio: 5.046409e-03	ci left: 1.081855e-01	ci right 1.087331e-01	k: 537957	n:4960000
KS ci ratio: 8.234794e-02	ci left: 4.378453e-04	ci right 4.756451e-04	k: 2264	n:4960000
MLL3   4960000 perm   11881 sec   (417 perm/sec)   p_kst 4.564516e-04   p_cons 1.084591e-01   p_joint 2.606855e-04

Joint ci ratio: 1.088747e-01	ci left: 2.465652e-04	ci right 2.751491e-04	k: 1295	n:4970000
Cons ci ratio: 5.041133e-03	ci left: 1.081933e-01	ci right 1.087403e-01	k: 539079	n:4970000
KS ci ratio: 8.232980e-02	ci left: 4.371614e-04	ci right 4.748934e-04	k: 2265	n:4970000
MLL3   4970000 perm   11924 sec   (417 perm/sec)   p_kst 4.557344e-04   p_cons 1.084666e-01   p_joint 2.605634e-04

Joint ci ratio: 1.087908e-01	ci left: 2.464607e-04	ci right 2.750091e-04	k: 1297	n:4980000
Cons ci ratio: 5.035958e-03	ci left: 1.081979e-01	ci right 1.087443e-01	k: 540185	n:4980000
KS ci ratio: 8.222100e-02	ci left: 4.374636e-04	ci right 4.751694e-04	k: 2271	n:4980000
MLL3   4980000 perm   11968 sec   (416 perm/sec)   p_kst 4.560241e-04   p_cons 1.084709e-01   p_joint 2.604418e-04

Joint ci ratio: 1.087908e-01	ci left: 2.459668e-04	ci right 2.744580e-04	k: 1297	n:4990000
Cons ci ratio: 5.030887e-03	ci left: 1.081990e-01	ci right 1.087449e-01	k: 541274	n:4990000
KS ci ratio: 8.216679e-02	ci left: 4.371757e-04	ci right 4.748307e-04	k: 2274	n:4990000
MLL3   4990000 perm   12011 sec   (415 perm/sec)   p_kst 4.557114e-04   p_cons 1.084717e-01   p_joint 2.599198e-04

Joint ci ratio: 1.113516e-01	ci left: 2.339996e-04	ci right 2.617845e-04	k: 1238	n:5000000
Cons ci ratio: 4.841264e-03	ci left: 1.156435e-01	ci right 1.162049e-01	k: 579620	n:5000000
KS ci ratio: 8.196881e-02	ci left: 4.384563e-04	ci right 4.761262e-04	k: 2285	n:5000000
MLL3   5000000 perm   12055 sec   (415 perm/sec)   p_kst 4.570000e-04   p_cons 1.159240e-01   p_joint 2.476000e-04

Outputting figure to mutsig2_images.part000000000106/MLL3.55_14972_5000000_0.000457_0.11592_0.0002476.png
                gene_name: MLL3
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00046 
        ci_ks_bounds_left: 0.00044 
       ci_ks_bounds_right: 0.00048 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.00025 
     ci_joint_bounds_left: 0.00023 
    ci_joint_bounds_right: 0.00026 

Current progress: 2 percent done.
MLL2
Processing conservation and coverage...
59% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
Cons ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
KS ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
MLL2   10000 perm   4 sec   (2398 perm/sec)   p_kst 2.226000e-01   p_cons 4.298000e-01   p_joint 2.293000e-01

Outputting figure to mutsig2_images.part000000000106/MLL2.25_16830_10000_0.2226_0.4298_0.2293.png
                gene_name: MLL2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 3 percent done.
MMP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
MMP16   10000 perm   2 sec   (4458 perm/sec)   p_kst 2.597000e-01   p_cons 9.770000e-02   p_joint 1.901000e-01

Joint ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
Cons ci ratio: 7.814601e-02	ci left: 1.073661e-01	ci right 1.161471e-01	k: 2234	n:20000
KS ci ratio: 4.706817e-02	ci left: 2.514010e-01	ci right 2.635696e-01	k: 5149	n:20000
MMP16   20000 perm   5 sec   (4109 perm/sec)   p_kst 2.574500e-01   p_cons 1.117000e-01   p_joint 1.613500e-01

Outputting figure to mutsig2_images.part000000000106/MMP16.22_2020_20000_0.25745_0.1117_0.16135.png
                gene_name: MMP16
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 5 percent done.
MMRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
MMRN1   10000 perm   2 sec   (4166 perm/sec)   p_kst 4.195000e-01   p_cons 8.454000e-01   p_joint 5.958000e-01

Outputting figure to mutsig2_images.part000000000106/MMRN1.19_3719_10000_0.4195_0.8454_0.5958.png
                gene_name: MMRN1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 7 percent done.
MMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
Cons ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
MMP2   10000 perm   2 sec   (4789 perm/sec)   p_kst 8.340000e-02   p_cons 4.244000e-01   p_joint 2.091000e-01

Joint ci ratio: 5.991330e-02	ci left: 1.709916e-01	ci right 1.816027e-01	k: 3525	n:20000
Cons ci ratio: 3.243689e-02	ci left: 4.151421e-01	ci right 4.288806e-01	k: 8440	n:20000
KS ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
MMP2   20000 perm   5 sec   (4378 perm/sec)   p_kst 8.090000e-02   p_cons 4.220000e-01   p_joint 1.762500e-01

Outputting figure to mutsig2_images.part000000000106/MMP2.13_2042_20000_0.0809_0.422_0.17625.png
                gene_name: MMP2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
MLL
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
Cons ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
MLL   10000 perm   3 sec   (3017 perm/sec)   p_kst 3.428000e-01   p_cons 5.193000e-01   p_joint 4.797000e-01

Outputting figure to mutsig2_images.part000000000106/MLL.12_12054_10000_0.3428_0.5193_0.4797.png
                gene_name: MLL
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 10 percent done.
MMP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
Cons ci ratio: 1.755968e-02	ci left: 8.254414e-01	ci right 8.401642e-01	k: 8329	n:10000
KS ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
MMP9   10000 perm   2 sec   (4668 perm/sec)   p_kst 1.604000e-01   p_cons 8.329000e-01   p_joint 2.540000e-01

Outputting figure to mutsig2_images.part000000000106/MMP9.10_2176_10000_0.1604_0.8329_0.254.png
                gene_name: MMP9
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
MLLT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
Cons ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
KS ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
MLLT10   10000 perm   2 sec   (4986 perm/sec)   p_kst 5.732000e-01   p_cons 3.171000e-01   p_joint 5.275000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT10.9_3172_10000_0.5732_0.3171_0.5275.png
                gene_name: MLLT10
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 14 percent done.
MME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
Cons ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
MME   10000 perm   2 sec   (5427 perm/sec)   p_kst 8.009000e-01   p_cons 7.440000e-02   p_joint 2.524000e-01

Joint ci ratio: 4.106065e-02	ci left: 3.065759e-01	ci right 3.194785e-01	k: 6260	n:20000
Cons ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
KS ci ratio: 1.404767e-02	ci left: 7.899939e-01	ci right 8.012200e-01	k: 15913	n:20000
MME   20000 perm   4 sec   (4869 perm/sec)   p_kst 7.956500e-01   p_cons 7.545000e-02   p_joint 3.130000e-01

Outputting figure to mutsig2_images.part000000000106/MME.8_2341_20000_0.79565_0.07545_0.313.png
                gene_name: MME
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 15 percent done.
MMP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
MMP13   10000 perm   2 sec   (5104 perm/sec)   p_kst 2.235000e-01   p_cons 1.970000e-01   p_joint 1.967000e-01

Outputting figure to mutsig2_images.part000000000106/MMP13.8_1456_10000_0.2235_0.197_0.1967.png
                gene_name: MMP13
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
MMP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
MMP27   10000 perm   2 sec   (5603 perm/sec)   p_kst 7.112000e-01   p_cons 3.790000e-02   p_joint 1.693000e-01

Joint ci ratio: 6.830217e-02	ci left: 1.365491e-01	ci right 1.462554e-01	k: 2827	n:20000
Cons ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
KS ci ratio: 1.793630e-02	ci left: 6.984743e-01	ci right 7.111661e-01	k: 14097	n:20000
MMP27   20000 perm   4 sec   (5014 perm/sec)   p_kst 7.048500e-01   p_cons 3.755000e-02   p_joint 1.413500e-01

Joint ci ratio: 6.491802e-02	ci left: 1.048377e-01	ci right 1.119050e-01	k: 3250	n:30000
Cons ci ratio: 1.157852e-01	ci left: 3.466545e-02	ci right 3.895819e-02	k: 1103	n:30000
KS ci ratio: 1.540758e-02	ci left: 6.780018e-01	ci right 6.885627e-01	k: 20499	n:30000
MMP27   30000 perm   6 sec   (4780 perm/sec)   p_kst 6.833000e-01   p_cons 3.676667e-02   p_joint 1.083333e-01

Joint ci ratio: 4.321990e-02	ci left: 1.668756e-01	ci right 1.742722e-01	k: 6822	n:40000
Cons ci ratio: 9.693766e-02	ci left: 3.736799e-02	ci right 4.119926e-02	k: 1570	n:40000
KS ci ratio: 1.333264e-02	ci left: 6.790669e-01	ci right 6.882065e-01	k: 27346	n:40000
MMP27   40000 perm   9 sec   (4644 perm/sec)   p_kst 6.836500e-01   p_cons 3.925000e-02   p_joint 1.705500e-01

Outputting figure to mutsig2_images.part000000000106/MMP27.8_1582_40000_0.68365_0.03925_0.17055.png
                gene_name: MMP27
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 19 percent done.
MNDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
KS ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
MNDA   10000 perm   2 sec   (6141 perm/sec)   p_kst 1.853000e-01   p_cons 7.820000e-02   p_joint 9.870000e-02

Joint ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
Cons ci ratio: 9.899308e-02	ci left: 6.909005e-02	ci right 7.633477e-02	k: 1453	n:20000
KS ci ratio: 5.796656e-02	ci left: 1.806777e-01	ci right 1.915137e-01	k: 3721	n:20000
MNDA   20000 perm   4 sec   (5483 perm/sec)   p_kst 1.860500e-01   p_cons 7.265000e-02   p_joint 1.052500e-01

Outputting figure to mutsig2_images.part000000000106/MNDA.8_1248_20000_0.18605_0.07265_0.10525.png
                gene_name: MNDA
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 20 percent done.
MLLT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 2.892069e-02	ci left: 6.380444e-01	ci right 6.568696e-01	k: 6475	n:10000
KS ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
MLLT3   10000 perm   2 sec   (5174 perm/sec)   p_kst 7.400000e-03   p_cons 6.475000e-01   p_joint 3.920000e-02

Joint ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
Cons ci ratio: 2.044193e-02	ci left: 6.410336e-01	ci right 6.543234e-01	k: 12954	n:20000
KS ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
MLLT3   20000 perm   4 sec   (4677 perm/sec)   p_kst 7.350000e-03   p_cons 6.477000e-01   p_joint 3.205000e-02

Joint ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
Cons ci ratio: 1.691716e-02	ci left: 6.360766e-01	ci right 6.469626e-01	k: 19246	n:30000
KS ci ratio: 2.580461e-01	ci left: 6.648515e-03	ci right 8.648608e-03	k: 228	n:30000
MLLT3   30000 perm   7 sec   (4478 perm/sec)   p_kst 7.600000e-03   p_cons 6.415333e-01   p_joint 3.900000e-02

Joint ci ratio: 1.185076e-01	ci left: 2.504504e-02	ci right 2.822419e-02	k: 1064	n:40000
Cons ci ratio: 1.473877e-02	ci left: 6.340452e-01	ci right 6.434847e-01	k: 25551	n:40000
KS ci ratio: 2.266127e-01	ci left: 6.583529e-03	ci right 8.289151e-03	k: 296	n:40000
MLLT3   40000 perm   9 sec   (4352 perm/sec)   p_kst 7.400000e-03   p_cons 6.387750e-01   p_joint 2.660000e-02

Joint ci ratio: 1.163444e-01	ci left: 2.090695e-02	ci right 2.350893e-02	k: 1109	n:50000
Cons ci ratio: 1.322212e-02	ci left: 6.331682e-01	ci right 6.416158e-01	k: 31870	n:50000
KS ci ratio: 2.005903e-01	ci left: 6.819465e-03	ci right 8.358533e-03	k: 378	n:50000
MLLT3   50000 perm   12 sec   (4246 perm/sec)   p_kst 7.560000e-03   p_cons 6.374000e-01   p_joint 2.218000e-02

Joint ci ratio: 1.143285e-01	ci left: 1.811694e-02	ci right 2.032991e-02	k: 1152	n:60000
Cons ci ratio: 1.205446e-02	ci left: 6.341397e-01	ci right 6.418469e-01	k: 38280	n:60000
KS ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
MLLT3   60000 perm   14 sec   (4151 perm/sec)   p_kst 7.700000e-03   p_cons 6.380000e-01   p_joint 1.920000e-02

Joint ci ratio: 1.138874e-01	ci left: 1.569421e-02	ci right 1.760330e-02	k: 1164	n:70000
Cons ci ratio: 1.118791e-02	ci left: 6.332819e-01	ci right 6.404211e-01	k: 44580	n:70000
KS ci ratio: 1.661860e-01	ci left: 7.230099e-03	ci right 8.554040e-03	k: 551	n:70000
MLLT3   70000 perm   17 sec   (4068 perm/sec)   p_kst 7.871429e-03   p_cons 6.368571e-01   p_joint 1.662857e-02

Joint ci ratio: 9.032789e-02	ci left: 2.196009e-02	ci right 2.404970e-02	k: 1839	n:80000
Cons ci ratio: 1.048589e-02	ci left: 6.326046e-01	ci right 6.392855e-01	k: 50876	n:80000
KS ci ratio: 1.536054e-01	ci left: 7.454444e-03	ci right 8.706625e-03	k: 645	n:80000
MLLT3   80000 perm   20 sec   (3995 perm/sec)   p_kst 8.062500e-03   p_cons 6.359500e-01   p_joint 2.298750e-02

Joint ci ratio: 8.723323e-02	ci left: 2.098632e-02	ci right 2.291133e-02	k: 1974	n:90000
Cons ci ratio: 9.888692e-03	ci left: 6.326797e-01	ci right 6.389782e-01	k: 57225	n:90000
KS ci ratio: 1.446953e-01	ci left: 7.503315e-03	ci right 8.684276e-03	k: 727	n:90000
MLLT3   90000 perm   23 sec   (3927 perm/sec)   p_kst 8.077778e-03   p_cons 6.358333e-01   p_joint 2.193333e-02

Joint ci ratio: 8.605086e-02	ci left: 1.945445e-02	ci right 2.121353e-02	k: 2032	n:100000
Cons ci ratio: 9.393067e-03	ci left: 6.322577e-01	ci right 6.382345e-01	k: 63525	n:100000
KS ci ratio: 1.380368e-01	ci left: 7.447511e-03	ci right 8.561310e-03	k: 799	n:100000
MLLT3   100000 perm   26 sec   (3865 perm/sec)   p_kst 7.990000e-03   p_cons 6.352500e-01   p_joint 2.032000e-02

Joint ci ratio: 8.523929e-02	ci left: 1.805894e-02	ci right 1.967566e-02	k: 2074	n:110000
Cons ci ratio: 8.950236e-03	ci left: 6.326933e-01	ci right 6.383905e-01	k: 69910	n:110000
KS ci ratio: 1.317640e-01	ci left: 7.455633e-03	ci right 8.516009e-03	k: 877	n:110000
MLLT3   110000 perm   29 sec   (3800 perm/sec)   p_kst 7.972727e-03   p_cons 6.355455e-01   p_joint 1.885455e-02

Joint ci ratio: 9.525393e-02	ci left: 1.325333e-02	ci right 1.458698e-02	k: 1669	n:120000
Cons ci ratio: 8.720340e-03	ci left: 6.246655e-01	ci right 6.301450e-01	k: 75289	n:120000
KS ci ratio: 1.252883e-01	ci left: 7.584453e-03	ci right 8.606200e-03	k: 970	n:120000
MLLT3   120000 perm   32 sec   (3741 perm/sec)   p_kst 8.083333e-03   p_cons 6.274083e-01   p_joint 1.390833e-02

Joint ci ratio: 9.583018e-02	ci left: 1.209834e-02	ci right 1.332354e-02	k: 1651	n:130000
Cons ci ratio: 8.373149e-03	ci left: 6.250578e-01	ci right 6.303211e-01	k: 81600	n:130000
KS ci ratio: 1.200237e-01	ci left: 7.649751e-03	ci right 8.633917e-03	k: 1057	n:130000
MLLT3   130000 perm   35 sec   (3687 perm/sec)   p_kst 8.130769e-03   p_cons 6.276923e-01   p_joint 1.270000e-02

Joint ci ratio: 8.365216e-02	ci left: 1.479644e-02	ci right 1.609517e-02	k: 2161	n:140000
Cons ci ratio: 8.229410e-03	ci left: 6.158708e-01	ci right 6.209671e-01	k: 86579	n:140000
KS ci ratio: 1.168203e-01	ci left: 7.512254e-03	ci right 8.451153e-03	k: 1116	n:140000
MLLT3   140000 perm   39 sec   (3633 perm/sec)   p_kst 7.971429e-03   p_cons 6.184214e-01   p_joint 1.543571e-02

Joint ci ratio: 9.132678e-02	ci left: 1.157889e-02	ci right 1.269342e-02	k: 1819	n:150000
Cons ci ratio: 7.943095e-03	ci left: 6.163899e-01	ci right 6.213121e-01	k: 92828	n:150000
KS ci ratio: 1.128490e-01	ci left: 7.529457e-03	ci right 8.436383e-03	k: 1196	n:150000
MLLT3   150000 perm   42 sec   (3581 perm/sec)   p_kst 7.973333e-03   p_cons 6.188533e-01   p_joint 1.212667e-02

Joint ci ratio: 7.518426e-02	ci left: 1.607775e-02	ci right 1.733985e-02	k: 2672	n:160000
Cons ci ratio: 7.685018e-03	ci left: 6.168279e-01	ci right 6.215927e-01	k: 99074	n:160000
KS ci ratio: 1.093866e-01	ci left: 7.526740e-03	ci right 8.403730e-03	k: 1273	n:160000
MLLT3   160000 perm   45 sec   (3526 perm/sec)   p_kst 7.956250e-03   p_cons 6.192125e-01   p_joint 1.670000e-02

Joint ci ratio: 8.019859e-02	ci left: 1.330270e-02	ci right 1.441985e-02	k: 2355	n:170000
Cons ci ratio: 7.450370e-03	ci left: 6.172283e-01	ci right 6.218499e-01	k: 105322	n:170000
KS ci ratio: 1.059088e-01	ci left: 7.570539e-03	ci right 8.422839e-03	k: 1358	n:170000
MLLT3   170000 perm   49 sec   (3475 perm/sec)   p_kst 7.988235e-03   p_cons 6.195412e-01   p_joint 1.385294e-02

Joint ci ratio: 7.442579e-02	ci left: 1.461256e-02	ci right 1.574757e-02	k: 2731	n:180000
Cons ci ratio: 7.240410e-03	ci left: 6.172969e-01	ci right 6.217881e-01	k: 111518	n:180000
KS ci ratio: 1.030311e-01	ci left: 7.566553e-03	ci right 8.393856e-03	k: 1435	n:180000
MLLT3   180000 perm   53 sec   (3429 perm/sec)   p_kst 7.972222e-03   p_cons 6.195444e-01   p_joint 1.517222e-02

Joint ci ratio: 7.272008e-02	ci left: 1.451508e-02	ci right 1.561558e-02	k: 2861	n:190000
Cons ci ratio: 7.039862e-03	ci left: 6.178552e-01	ci right 6.222254e-01	k: 117808	n:190000
KS ci ratio: 9.987801e-02	ci left: 7.640253e-03	ci right 8.448550e-03	k: 1527	n:190000
MLLT3   190000 perm   56 sec   (3383 perm/sec)   p_kst 8.036842e-03   p_cons 6.200421e-01   p_joint 1.505789e-02

Outputting figure to mutsig2_images.part000000000106/MLLT3.7_1751_190000_0.0080368_0.62004_0.015058.png
                gene_name: MLLT3
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.0080 
        ci_ks_bounds_left: 0.0076 
       ci_ks_bounds_right: 0.0084 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 22 percent done.
MMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
MMP1   10000 perm   2 sec   (5412 perm/sec)   p_kst 2.718000e-01   p_cons 7.483000e-01   p_joint 4.636000e-01

Outputting figure to mutsig2_images.part000000000106/MMP1.7_1450_10000_0.2718_0.7483_0.4636.png
                gene_name: MMP1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 24 percent done.
MMP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
Cons ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
KS ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
MMP19   10000 perm   2 sec   (5125 perm/sec)   p_kst 7.483000e-01   p_cons 4.060000e-02   p_joint 2.362000e-01

Joint ci ratio: 6.915897e-02	ci left: 1.335927e-01	ci right 1.432126e-01	k: 2767	n:20000
Cons ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
KS ci ratio: 1.635952e-02	ci left: 7.355237e-01	ci right 7.477060e-01	k: 14833	n:20000
MMP19   20000 perm   4 sec   (4623 perm/sec)   p_kst 7.416500e-01   p_cons 4.270000e-02   p_joint 1.383500e-01

Joint ci ratio: 6.082745e-02	ci left: 1.178889e-01	ci right 1.253179e-01	k: 3647	n:30000
Cons ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
KS ci ratio: 1.341157e-02	ci left: 7.350973e-01	ci right 7.450561e-01	k: 22203	n:30000
MMP19   30000 perm   7 sec   (4403 perm/sec)   p_kst 7.401000e-01   p_cons 3.996667e-02   p_joint 1.215667e-01

Joint ci ratio: 5.322790e-02	ci left: 1.162128e-01	ci right 1.225925e-01	k: 4775	n:40000
Cons ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
KS ci ratio: 1.147896e-02	ci left: 7.402963e-01	ci right 7.488682e-01	k: 29784	n:40000
MMP19   40000 perm   9 sec   (4270 perm/sec)   p_kst 7.446000e-01   p_cons 3.995000e-02   p_joint 1.193750e-01

Outputting figure to mutsig2_images.part000000000106/MMP19.7_1563_40000_0.7446_0.03995_0.11937.png
                gene_name: MMP19
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 25 percent done.
MOCOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322234e-02	ci left: 8.917993e-01	ci right 9.037679e-01	k: 8979	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
MOCOS   10000 perm   2 sec   (4930 perm/sec)   p_kst 9.153000e-01   p_cons 4.556000e-01   p_joint 8.979000e-01

Outputting figure to mutsig2_images.part000000000106/MOCOS.7_2727_10000_0.9153_0.4556_0.8979.png
                gene_name: MOCOS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 27 percent done.
MLH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
Cons ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
MLH3   10000 perm   2 sec   (4502 perm/sec)   p_kst 3.331000e-01   p_cons 9.376000e-01   p_joint 4.861000e-01

Outputting figure to mutsig2_images.part000000000106/MLH3.6_4410_10000_0.3331_0.9376_0.4861.png
                gene_name: MLH3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 29 percent done.
MMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
MMD2   10000 perm   2 sec   (6263 perm/sec)   p_kst 3.479000e-01   p_cons 1.596000e-01   p_joint 3.221000e-01

Outputting figure to mutsig2_images.part000000000106/MMD2.6_841_10000_0.3479_0.1596_0.3221.png
                gene_name: MMD2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 31 percent done.
MMP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
Cons ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
KS ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
MMP12   10000 perm   2 sec   (5445 perm/sec)   p_kst 3.508000e-01   p_cons 4.292000e-01   p_joint 5.245000e-01

Outputting figure to mutsig2_images.part000000000106/MMP12.6_1452_10000_0.3508_0.4292_0.5245.png
                gene_name: MMP12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
MN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
MN1   10000 perm   2 sec   (4800 perm/sec)   p_kst 1.400000e-02   p_cons 6.928000e-01   p_joint 4.260000e-02

Joint ci ratio: 1.282129e-01	ci left: 4.178055e-02	ci right 4.755277e-02	k: 892	n:20000
Cons ci ratio: 1.861339e-02	ci left: 6.827336e-01	ci right 6.956114e-01	k: 13784	n:20000
KS ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
MN1   20000 perm   5 sec   (4341 perm/sec)   p_kst 1.420000e-02   p_cons 6.892000e-01   p_joint 4.460000e-02

Joint ci ratio: 9.793022e-02	ci left: 4.821186e-02	ci right 5.320894e-02	k: 1520	n:30000
Cons ci ratio: 1.518492e-02	ci left: 6.842963e-01	ci right 6.948003e-01	k: 20687	n:30000
KS ci ratio: 1.774827e-01	ci left: 1.457862e-02	ci right 1.744955e-02	k: 479	n:30000
MN1   30000 perm   7 sec   (4168 perm/sec)   p_kst 1.596667e-02   p_cons 6.895667e-01   p_joint 5.066667e-02

Joint ci ratio: 1.003441e-01	ci left: 3.490299e-02	ci right 3.861465e-02	k: 1469	n:40000
Cons ci ratio: 1.313422e-02	ci left: 6.855419e-01	ci right 6.946305e-01	k: 27604	n:40000
KS ci ratio: 1.560764e-01	ci left: 1.431219e-02	ci right 1.675887e-02	k: 620	n:40000
MN1   40000 perm   10 sec   (4059 perm/sec)   p_kst 1.550000e-02   p_cons 6.901000e-01   p_joint 3.672500e-02

Joint ci ratio: 8.978876e-02	ci left: 3.506887e-02	ci right 3.838520e-02	k: 1835	n:50000
Cons ci ratio: 1.176796e-02	ci left: 6.852829e-01	ci right 6.934151e-01	k: 34468	n:50000
KS ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
MN1   50000 perm   13 sec   (3974 perm/sec)   p_kst 1.528000e-02   p_cons 6.893600e-01   p_joint 3.670000e-02

Joint ci ratio: 7.726615e-02	ci left: 3.954178e-02	ci right 4.273613e-02	k: 2467	n:60000
Cons ci ratio: 1.102561e-02	ci left: 6.743615e-01	ci right 6.818546e-01	k: 40687	n:60000
KS ci ratio: 1.293177e-01	ci left: 1.410711e-02	ci right 1.607353e-02	k: 904	n:60000
MN1   60000 perm   15 sec   (3903 perm/sec)   p_kst 1.506667e-02   p_cons 6.781167e-01   p_joint 4.111667e-02

Joint ci ratio: 8.240515e-02	ci left: 3.002238e-02	ci right 3.261666e-02	k: 2191	n:70000
Cons ci ratio: 1.021816e-02	ci left: 6.741947e-01	ci right 6.811334e-01	k: 47437	n:70000
KS ci ratio: 1.194859e-01	ci left: 1.423732e-02	ci right 1.606034e-02	k: 1059	n:70000
MN1   70000 perm   18 sec   (3836 perm/sec)   p_kst 1.512857e-02   p_cons 6.776714e-01   p_joint 3.130000e-02

Joint ci ratio: 7.357980e-02	ci left: 3.300039e-02	ci right 3.553353e-02	k: 2740	n:80000
Cons ci ratio: 9.554316e-03	ci left: 6.745992e-01	ci right 6.810879e-01	k: 54228	n:80000
KS ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
MN1   80000 perm   21 sec   (3773 perm/sec)   p_kst 1.503750e-02   p_cons 6.778500e-01   p_joint 3.425000e-02

Joint ci ratio: 6.866725e-02	ci left: 3.374322e-02	ci right 3.615355e-02	k: 3144	n:90000
Cons ci ratio: 9.004353e-03	ci left: 6.749584e-01	ci right 6.810745e-01	k: 61022	n:90000
KS ci ratio: 1.055286e-01	ci left: 1.430255e-02	ci right 1.590670e-02	k: 1358	n:90000
MN1   90000 perm   24 sec   (3715 perm/sec)   p_kst 1.508889e-02   p_cons 6.780222e-01   p_joint 3.493333e-02

Joint ci ratio: 6.223451e-02	ci left: 3.697114e-02	ci right 3.935574e-02	k: 3815	n:100000
Cons ci ratio: 8.341471e-03	ci left: 6.854388e-01	ci right 6.911903e-01	k: 68832	n:100000
KS ci ratio: 9.964527e-02	ci left: 1.448004e-02	ci right 1.600826e-02	k: 1523	n:100000
MN1   100000 perm   27 sec   (3661 perm/sec)   p_kst 1.523000e-02   p_cons 6.883200e-01   p_joint 3.815000e-02

Outputting figure to mutsig2_images.part000000000106/MN1.6_3971_100000_0.01523_0.68832_0.03815.png
                gene_name: MN1
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 34 percent done.
MOCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
Cons ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
MOCS3   10000 perm   2 sec   (6102 perm/sec)   p_kst 1.184000e-01   p_cons 1.222000e-01   p_joint 9.640000e-02

Joint ci ratio: 1.111467e-01	ci left: 5.528683e-02	ci right 6.184224e-02	k: 1170	n:20000
Cons ci ratio: 7.441060e-02	ci left: 1.172975e-01	ci right 1.264127e-01	k: 2436	n:20000
KS ci ratio: 7.415097e-02	ci left: 1.180354e-01	ci right 1.271746e-01	k: 2451	n:20000
MOCS3   20000 perm   4 sec   (5420 perm/sec)   p_kst 1.225500e-01   p_cons 1.218000e-01   p_joint 5.850000e-02

Joint ci ratio: 8.585932e-02	ci left: 6.217058e-02	ci right 6.778070e-02	k: 1948	n:30000
Cons ci ratio: 6.353464e-02	ci left: 1.090111e-01	ci right 1.161974e-01	k: 3377	n:30000
KS ci ratio: 6.049752e-02	ci left: 1.190402e-01	ci right 1.264996e-01	k: 3682	n:30000
MOCS3   30000 perm   6 sec   (5141 perm/sec)   p_kst 1.227333e-01   p_cons 1.125667e-01   p_joint 6.493333e-02

Outputting figure to mutsig2_images.part000000000106/MOCS3.6_1387_30000_0.12273_0.11257_0.064933.png
                gene_name: MOCS3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 36 percent done.
MORC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
Cons ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
KS ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
MORC1   10000 perm   2 sec   (4727 perm/sec)   p_kst 5.674000e-01   p_cons 3.660000e-01   p_joint 5.922000e-01

Outputting figure to mutsig2_images.part000000000106/MORC1.6_3067_10000_0.5674_0.366_0.5922.png
                gene_name: MORC1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 37 percent done.
MLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
KS ci ratio: 2.049103e-02	ci left: 7.772209e-01	ci right 7.934125e-01	k: 7854	n:10000
MLH1   10000 perm   2 sec   (5360 perm/sec)   p_kst 7.854000e-01   p_cons 3.032000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLH1.5_2347_10000_0.7854_0.3032_1.png
                gene_name: MLH1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
MMP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
Cons ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
KS ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
MMP20   10000 perm   2 sec   (5438 perm/sec)   p_kst 5.031000e-01   p_cons 9.530000e-02   p_joint 2.329000e-01

Joint ci ratio: 4.638866e-02	ci left: 2.569578e-01	ci right 2.692111e-01	k: 5261	n:20000
Cons ci ratio: 8.466752e-02	ci left: 9.268686e-02	ci right 1.009308e-01	k: 1935	n:20000
KS ci ratio: 2.743251e-02	ci left: 4.981955e-01	ci right 5.121030e-01	k: 10103	n:20000
MMP20   20000 perm   4 sec   (4884 perm/sec)   p_kst 5.051500e-01   p_cons 9.675000e-02   p_joint 2.630500e-01

Outputting figure to mutsig2_images.part000000000106/MMP20.5_1492_20000_0.50515_0.09675_0.26305.png
                gene_name: MMP20
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 41 percent done.
MMP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
Cons ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
KS ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
MMP26   10000 perm   2 sec   (6336 perm/sec)   p_kst 4.298000e-01   p_cons 1.429000e-01   p_joint 2.755000e-01

Outputting figure to mutsig2_images.part000000000106/MMP26.5_810_10000_0.4298_0.1429_0.2755.png
                gene_name: MMP26
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 42 percent done.
MON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
MON2   10000 perm   2 sec   (4313 perm/sec)   p_kst 4.873000e-01   p_cons 2.606000e-01   p_joint 4.526000e-01

Outputting figure to mutsig2_images.part000000000106/MON2.5_5294_10000_0.4873_0.2606_0.4526.png
                gene_name: MON2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
MLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
MLC1   10000 perm   2 sec   (6331 perm/sec)   p_kst 8.869000e-01   p_cons 5.357000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLC1.4_1178_10000_0.8869_0.5357_1.png
                gene_name: MLC1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
MLEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
Cons ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
KS ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
MLEC   10000 perm   2 sec   (6388 perm/sec)   p_kst 3.401000e-01   p_cons 2.827000e-01   p_joint 4.959000e-01

Outputting figure to mutsig2_images.part000000000106/MLEC.4_899_10000_0.3401_0.2827_0.4959.png
                gene_name: MLEC
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
MLKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
MLKL   10000 perm   2 sec   (5823 perm/sec)   p_kst 7.272000e-01   p_cons 7.510000e-02   p_joint 2.929000e-01

Joint ci ratio: 4.105111e-02	ci left: 3.066753e-01	ci right 3.195790e-01	k: 6262	n:20000
Cons ci ratio: 9.776585e-02	ci left: 7.075129e-02	ci right 7.807302e-02	k: 1487	n:20000
KS ci ratio: 1.621655e-02	ci left: 7.388990e-01	ci right 7.510297e-01	k: 14900	n:20000
MLKL   20000 perm   4 sec   (5223 perm/sec)   p_kst 7.450000e-01   p_cons 7.435000e-02   p_joint 3.131000e-01

Outputting figure to mutsig2_images.part000000000106/MLKL.4_1487_20000_0.745_0.07435_0.3131.png
                gene_name: MLKL
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 49 percent done.
MLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
MLL4   10000 perm   3 sec   (3811 perm/sec)   p_kst 2.683000e-01   p_cons 5.538000e-01   p_joint 4.456000e-01

Outputting figure to mutsig2_images.part000000000106/MLL4.4_8296_10000_0.2683_0.5538_0.4456.png
                gene_name: MLL4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 51 percent done.
MLLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
MLLT4   10000 perm   2 sec   (4640 perm/sec)   p_kst 9.488000e-01   p_cons 5.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLLT4.4_5734_10000_0.9488_0.5934_1.png
                gene_name: MLLT4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
MLLT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
Cons ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
KS ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
MLLT6   10000 perm   2 sec   (5015 perm/sec)   p_kst 2.310000e-01   p_cons 6.410000e-01   p_joint 4.561000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT6.4_3362_10000_0.231_0.641_0.4561.png
                gene_name: MLLT6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
MLYCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
Cons ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
KS ci ratio: 5.370375e-02	ci left: 3.381626e-01	ci right 3.569262e-01	k: 3475	n:10000
MLYCD   10000 perm   2 sec   (6060 perm/sec)   p_kst 3.475000e-01   p_cons 3.159000e-01   p_joint 3.688000e-01

Outputting figure to mutsig2_images.part000000000106/MLYCD.4_1502_10000_0.3475_0.3159_0.3688.png
                gene_name: MLYCD
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 56 percent done.
MMP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
Cons ci ratio: 4.659998e-02	ci left: 4.046213e-01	ci right 4.240286e-01	k: 4143	n:10000
KS ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
MMP10   10000 perm   2 sec   (6025 perm/sec)   p_kst 2.061000e-01   p_cons 4.143000e-01   p_joint 3.093000e-01

Outputting figure to mutsig2_images.part000000000106/MMP10.4_1471_10000_0.2061_0.4143_0.3093.png
                gene_name: MMP10
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 58 percent done.
MMP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
Cons ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
KS ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
MMP25   10000 perm   2 sec   (5683 perm/sec)   p_kst 1.960000e-01   p_cons 2.682000e-01   p_joint 1.909000e-01

Outputting figure to mutsig2_images.part000000000106/MMP25.4_1729_10000_0.196_0.2682_0.1909.png
                gene_name: MMP25
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 59 percent done.
MMP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
Cons ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
KS ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
MMP7   10000 perm   2 sec   (5885 perm/sec)   p_kst 4.371000e-01   p_cons 4.122000e-01   p_joint 5.076000e-01

Outputting figure to mutsig2_images.part000000000106/MMP7.4_828_10000_0.4371_0.4122_0.5076.png
                gene_name: MMP7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 61 percent done.
MMS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
Cons ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
KS ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
MMS19   10000 perm   2 sec   (4914 perm/sec)   p_kst 2.537000e-01   p_cons 7.963000e-01   p_joint 5.861000e-01

Outputting figure to mutsig2_images.part000000000106/MMS19.4_3217_10000_0.2537_0.7963_0.5861.png
                gene_name: MMS19
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 63 percent done.
MLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
Cons ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
KS ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
MLL5   10000 perm   2 sec   (4500 perm/sec)   p_kst 7.438000e-01   p_cons 5.130000e-02   p_joint 3.062000e-01

Joint ci ratio: 5.500708e-02	ci left: 1.968996e-01	ci right 2.080870e-01	k: 4049	n:20000
Cons ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
KS ci ratio: 1.603520e-02	ci left: 7.431819e-01	ci right 7.552456e-01	k: 14985	n:20000
MLL5   20000 perm   5 sec   (4058 perm/sec)   p_kst 7.492500e-01   p_cons 5.725000e-02   p_joint 2.024500e-01

Joint ci ratio: 3.540085e-02	ci left: 2.849686e-01	ci right 2.952720e-01	k: 8703	n:30000
Cons ci ratio: 9.051919e-02	ci left: 5.616410e-02	ci right 6.152173e-02	k: 1764	n:30000
KS ci ratio: 1.314440e-02	ci left: 7.428117e-01	ci right 7.526736e-01	k: 22433	n:30000
MLL5   30000 perm   8 sec   (3905 perm/sec)   p_kst 7.477667e-01   p_cons 5.880000e-02   p_joint 2.901000e-01

Outputting figure to mutsig2_images.part000000000106/MLL5.3_5677_30000_0.74777_0.0588_0.2901.png
                gene_name: MLL5
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 64 percent done.
MMAA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.026420e-02	ci left: 6.169333e-01	ci right 6.359930e-01	k: 6265	n:10000
KS ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
MMAA   10000 perm   2 sec   (6113 perm/sec)   p_kst 8.908000e-01   p_cons 6.265000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMAA.3_1281_10000_0.8908_0.6265_1.png
                gene_name: MMAA
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
MMEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
KS ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
MMEL1   10000 perm   2 sec   (5570 perm/sec)   p_kst 1.097000e-01   p_cons 6.634000e-01   p_joint 2.976000e-01

Joint ci ratio: 5.203265e-02	ci left: 2.152655e-01	ci right 2.268157e-01	k: 4420	n:20000
Cons ci ratio: 1.918474e-02	ci left: 6.695642e-01	ci right 6.825845e-01	k: 13522	n:20000
KS ci ratio: 7.937067e-02	ci left: 1.043692e-01	ci right 1.130449e-01	k: 2173	n:20000
MMEL1   20000 perm   4 sec   (4960 perm/sec)   p_kst 1.086500e-01   p_cons 6.761000e-01   p_joint 2.210000e-01

Outputting figure to mutsig2_images.part000000000106/MMEL1.3_2432_20000_0.10865_0.6761_0.221.png
                gene_name: MMEL1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 68 percent done.
MMP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.917116e-02	ci left: 7.991260e-01	ci right 8.146948e-01	k: 8070	n:10000
KS ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
MMP14   10000 perm   2 sec   (6439 perm/sec)   p_kst 6.382000e-01   p_cons 8.070000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMP14.3_1789_10000_0.6382_0.807_1.png
                gene_name: MMP14
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
MMP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
Cons ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
KS ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
MMP17   10000 perm   2 sec   (6051 perm/sec)   p_kst 6.951000e-01   p_cons 4.316000e-01   p_joint 9.454000e-01

Outputting figure to mutsig2_images.part000000000106/MMP17.3_1852_10000_0.6951_0.4316_0.9454.png
                gene_name: MMP17
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 71 percent done.
MMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
MMP3   10000 perm   2 sec   (6491 perm/sec)   p_kst 6.207000e-01   p_cons 8.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMP3.3_1474_10000_0.6207_0.8177_1.png
                gene_name: MMP3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
MOGAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
Cons ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
KS ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
MOGAT2   10000 perm   2 sec   (6394 perm/sec)   p_kst 2.342000e-01   p_cons 3.857000e-01   p_joint 4.590000e-01

Outputting figure to mutsig2_images.part000000000106/MOGAT2.3_1028_10000_0.2342_0.3857_0.459.png
                gene_name: MOGAT2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 75 percent done.
MOGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
Cons ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
MOGAT3   10000 perm   2 sec   (6280 perm/sec)   p_kst 1.907000e-01   p_cons 4.377000e-01   p_joint 5.274000e-01

Outputting figure to mutsig2_images.part000000000106/MOGAT3.3_1054_10000_0.1907_0.4377_0.5274.png
                gene_name: MOGAT3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 76 percent done.
MOGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
Cons ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
KS ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
MOGS   10000 perm   2 sec   (5747 perm/sec)   p_kst 6.621000e-01   p_cons 5.327000e-01   p_joint 6.764000e-01

Outputting figure to mutsig2_images.part000000000106/MOGS.3_2530_10000_0.6621_0.5327_0.6764.png
                gene_name: MOGS
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 78 percent done.
MLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
Cons ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
MLF1   10000 perm   2 sec   (6607 perm/sec)   p_kst 4.863000e-01   p_cons 2.636000e-01   p_joint 9.733000e-01

Outputting figure to mutsig2_images.part000000000106/MLF1.2_835_10000_0.4863_0.2636_0.9733.png
                gene_name: MLF1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 80 percent done.
MLF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194384e-03	ci left: 9.917226e-01	ci right 9.949800e-01	k: 9935	n:10000
Cons ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
MLF2   10000 perm   1 sec   (7022 perm/sec)   p_kst 2.714000e-01   p_cons 6.415000e-01   p_joint 9.935000e-01

Outputting figure to mutsig2_images.part000000000106/MLF2.2_775_10000_0.2714_0.6415_0.9935.png
                gene_name: MLF2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
MLXIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.094428e-03	ci left: 9.445056e-01	ci right 9.532306e-01	k: 9490	n:10000
KS ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
MLXIP   10000 perm   2 sec   (5758 perm/sec)   p_kst 7.688000e-01   p_cons 9.490000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLXIP.2_2828_10000_0.7688_0.949_1.png
                gene_name: MLXIP
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MLXIPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917392e-03	ci left: 9.819904e-01	ci right 9.869215e-01	k: 9846	n:10000
Cons ci ratio: 1.787402e-02	ci left: 8.203566e-01	ci right 8.352519e-01	k: 8279	n:10000
KS ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
MLXIPL   10000 perm   2 sec   (6009 perm/sec)   p_kst 3.832000e-01   p_cons 8.279000e-01   p_joint 9.846000e-01

Outputting figure to mutsig2_images.part000000000106/MLXIPL.2_2627_10000_0.3832_0.8279_0.9846.png
                gene_name: MLXIPL
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
MMP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
MMP8   10000 perm   2 sec   (6605 perm/sec)   p_kst 2.472000e-01   p_cons 9.361000e-01   p_joint 9.789000e-01

Outputting figure to mutsig2_images.part000000000106/MMP8.2_1444_10000_0.2472_0.9361_0.9789.png
                gene_name: MMP8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 86 percent done.
MNAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
Cons ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
KS ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
MNAT1   10000 perm   2 sec   (6540 perm/sec)   p_kst 3.096000e-01   p_cons 1.954000e-01   p_joint 5.000000e-01

Outputting figure to mutsig2_images.part000000000106/MNAT1.2_962_10000_0.3096_0.1954_0.5.png
                gene_name: MNAT1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 88 percent done.
MNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
MNS1   10000 perm   2 sec   (6499 perm/sec)   p_kst 3.420000e-01   p_cons 3.652000e-01   p_joint 5.450000e-01

Outputting figure to mutsig2_images.part000000000106/MNS1.2_1528_10000_0.342_0.3652_0.545.png
                gene_name: MNS1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 90 percent done.
MOAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
KS ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
MOAP1   10000 perm   2 sec   (6559 perm/sec)   p_kst 1.465000e-01   p_cons 4.800000e-03   p_joint 1.110000e-02

Joint ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
Cons ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
KS ci ratio: 6.687646e-02	ci left: 1.416753e-01	ci right 1.515277e-01	k: 2931	n:20000
MOAP1   20000 perm   3 sec   (5739 perm/sec)   p_kst 1.465500e-01   p_cons 4.700000e-03   p_joint 1.020000e-02

Joint ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
Cons ci ratio: 2.098253e-01	ci left: 1.029273e-02	ci right 1.273658e-02	k: 344	n:30000
KS ci ratio: 5.463382e-02	ci left: 1.424504e-01	ci right 1.504848e-01	k: 4393	n:30000
MOAP1   30000 perm   6 sec   (5423 perm/sec)   p_kst 1.464333e-01   p_cons 1.146667e-02   p_joint 1.123333e-02

Joint ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
Cons ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
KS ci ratio: 4.719022e-02	ci left: 1.436421e-01	ci right 1.506093e-01	k: 5884	n:40000
MOAP1   40000 perm   8 sec   (5237 perm/sec)   p_kst 1.471000e-01   p_cons 1.187500e-02   p_joint 1.495000e-02

Joint ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
Cons ci ratio: 1.604273e-01	ci left: 1.085271e-02	ci right 1.276460e-02	k: 589	n:50000
KS ci ratio: 4.239512e-02	ci left: 1.429156e-01	ci right 1.491256e-01	k: 7300	n:50000
MOAP1   50000 perm   10 sec   (5094 perm/sec)   p_kst 1.460000e-01   p_cons 1.178000e-02   p_joint 1.296000e-02

Joint ci ratio: 1.397145e-01	ci left: 1.204455e-02	ci right 1.386968e-02	k: 776	n:60000
Cons ci ratio: 1.476144e-01	ci left: 1.075858e-02	ci right 1.248915e-02	k: 696	n:60000
KS ci ratio: 3.850646e-02	ci left: 1.444399e-01	ci right 1.501276e-01	k: 8836	n:60000
MOAP1   60000 perm   12 sec   (4951 perm/sec)   p_kst 1.472667e-01   p_cons 1.160000e-02   p_joint 1.293333e-02

Joint ci ratio: 1.303375e-01	ci left: 1.192506e-02	ci right 1.360140e-02	k: 892	n:70000
Cons ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
KS ci ratio: 3.564975e-02	ci left: 1.446537e-01	ci right 1.499184e-01	k: 10309	n:70000
MOAP1   70000 perm   14 sec   (4842 perm/sec)   p_kst 1.472714e-01   p_cons 1.160000e-02   p_joint 1.274286e-02

Joint ci ratio: 1.237485e-01	ci left: 1.162040e-02	ci right 1.316527e-02	k: 990	n:80000
Cons ci ratio: 1.270338e-01	ci left: 1.101478e-02	ci right 1.252094e-02	k: 940	n:80000
KS ci ratio: 3.335537e-02	ci left: 1.447638e-01	ci right 1.496868e-01	k: 11777	n:80000
MOAP1   80000 perm   17 sec   (4750 perm/sec)   p_kst 1.472125e-01   p_cons 1.175000e-02   p_joint 1.237500e-02

Joint ci ratio: 1.360157e-01	ci left: 8.522127e-03	ci right 9.776483e-03	k: 822	n:90000
Cons ci ratio: 1.199767e-01	ci left: 1.101847e-02	ci right 1.243549e-02	k: 1054	n:90000
KS ci ratio: 3.141753e-02	ci left: 1.451450e-01	ci right 1.497889e-01	k: 13271	n:90000
MOAP1   90000 perm   19 sec   (4660 perm/sec)   p_kst 1.474556e-01   p_cons 1.171111e-02   p_joint 9.133333e-03

Joint ci ratio: 1.599545e-01	ci left: 5.492315e-03	ci right 6.456678e-03	k: 596	n:100000
Cons ci ratio: 1.141269e-01	ci left: 1.099412e-02	ci right 1.233442e-02	k: 1165	n:100000
KS ci ratio: 2.977885e-02	ci left: 1.454863e-01	ci right 1.498941e-01	k: 14768	n:100000
MOAP1   100000 perm   22 sec   (4565 perm/sec)   p_kst 1.476800e-01   p_cons 1.165000e-02   p_joint 5.960000e-03

Joint ci ratio: 1.621982e-01	ci left: 4.853290e-03	ci right 5.718563e-03	k: 580	n:110000
Cons ci ratio: 1.087557e-01	ci left: 1.103751e-02	ci right 1.231571e-02	k: 1283	n:110000
KS ci ratio: 2.842783e-02	ci left: 1.452827e-01	ci right 1.494814e-01	k: 16211	n:110000
MOAP1   110000 perm   25 sec   (4482 perm/sec)   p_kst 1.473727e-01   p_cons 1.166364e-02   p_joint 5.272727e-03

Joint ci ratio: 1.549026e-01	ci left: 4.897015e-03	ci right 5.727167e-03	k: 636	n:120000
Cons ci ratio: 1.047222e-01	ci left: 1.093688e-02	ci right 1.215356e-02	k: 1384	n:120000
KS ci ratio: 2.717329e-02	ci left: 1.457798e-01	ci right 1.498039e-01	k: 17734	n:120000
MOAP1   120000 perm   27 sec   (4397 perm/sec)   p_kst 1.477833e-01   p_cons 1.153333e-02   p_joint 5.300000e-03

Joint ci ratio: 1.481884e-01	ci left: 4.956975e-03	ci right 5.757641e-03	k: 695	n:130000
Cons ci ratio: 9.979003e-02	ci left: 1.114503e-02	ci right 1.232305e-02	k: 1524	n:130000
KS ci ratio: 2.610081e-02	ci left: 1.459207e-01	ci right 1.497873e-01	k: 19220	n:130000
MOAP1   130000 perm   30 sec   (4317 perm/sec)   p_kst 1.478462e-01   p_cons 1.172308e-02   p_joint 5.346154e-03

Joint ci ratio: 1.426582e-01	ci left: 4.981475e-03	ci right 5.753515e-03	k: 750	n:140000
Cons ci ratio: 9.596246e-02	ci left: 1.121301e-02	ci right 1.235020e-02	k: 1648	n:140000
KS ci ratio: 2.514321e-02	ci left: 1.460726e-01	ci right 1.497992e-01	k: 20710	n:140000
MOAP1   140000 perm   33 sec   (4243 perm/sec)   p_kst 1.479286e-01   p_cons 1.177143e-02   p_joint 5.357143e-03

Joint ci ratio: 1.378763e-01	ci left: 4.990313e-03	ci right 5.735669e-03	k: 803	n:150000
Cons ci ratio: 9.288924e-02	ci left: 1.118800e-02	ci right 1.228433e-02	k: 1759	n:150000
KS ci ratio: 2.432498e-02	ci left: 1.457819e-01	ci right 1.493784e-01	k: 22136	n:150000
MOAP1   150000 perm   36 sec   (4172 perm/sec)   p_kst 1.475733e-01   p_cons 1.172667e-02   p_joint 5.353333e-03

Joint ci ratio: 1.332329e-01	ci left: 5.022595e-03	ci right 5.745506e-03	k: 860	n:160000
Cons ci ratio: 8.985089e-02	ci left: 1.122773e-02	ci right 1.229007e-02	k: 1880	n:160000
KS ci ratio: 2.353024e-02	ci left: 1.460767e-01	ci right 1.495611e-01	k: 23650	n:160000
MOAP1   160000 perm   39 sec   (4100 perm/sec)   p_kst 1.478125e-01   p_cons 1.175000e-02   p_joint 5.375000e-03

Joint ci ratio: 1.099353e-01	ci left: 7.015237e-03	ci right 7.836990e-03	k: 1261	n:170000
Cons ci ratio: 8.689499e-02	ci left: 1.131510e-02	ci right 1.234871e-02	k: 2010	n:170000
KS ci ratio: 2.280969e-02	ci left: 1.463268e-01	ci right 1.497088e-01	k: 25162	n:170000
MOAP1   170000 perm   42 sec   (4034 perm/sec)   p_kst 1.480118e-01   p_cons 1.182353e-02   p_joint 7.417647e-03

Joint ci ratio: 1.259158e-01	ci left: 5.018214e-03	ci right 5.697867e-03	k: 963	n:180000
Cons ci ratio: 8.455320e-02	ci left: 1.130080e-02	ci right 1.230390e-02	k: 2123	n:180000
KS ci ratio: 2.217103e-02	ci left: 1.463293e-01	ci right 1.496154e-01	k: 26634	n:180000
MOAP1   180000 perm   45 sec   (3970 perm/sec)   p_kst 1.479667e-01   p_cons 1.179444e-02   p_joint 5.350000e-03

Joint ci ratio: 1.218703e-01	ci left: 5.085612e-03	ci right 5.750668e-03	k: 1028	n:190000
Cons ci ratio: 8.213140e-02	ci left: 1.136053e-02	ci right 1.233866e-02	k: 2250	n:190000
KS ci ratio: 2.156382e-02	ci left: 1.465580e-01	ci right 1.497580e-01	k: 28149	n:190000
MOAP1   190000 perm   49 sec   (3910 perm/sec)   p_kst 1.481526e-01   p_cons 1.184211e-02   p_joint 5.410526e-03

Joint ci ratio: 1.192926e-01	ci left: 5.049539e-03	ci right 5.694925e-03	k: 1073	n:200000
Cons ci ratio: 8.007700e-02	ci left: 1.136564e-02	ci right 1.231859e-02	k: 2367	n:200000
KS ci ratio: 2.103014e-02	ci left: 1.464513e-01	ci right 1.495689e-01	k: 29601	n:200000
MOAP1   200000 perm   52 sec   (3848 perm/sec)   p_kst 1.480050e-01   p_cons 1.183500e-02   p_joint 5.365000e-03

Joint ci ratio: 9.438078e-02	ci left: 7.762906e-03	ci right 8.536478e-03	k: 1710	n:210000
Cons ci ratio: 7.821723e-02	ci left: 1.135653e-02	ci right 1.228559e-02	k: 2481	n:210000
KS ci ratio: 2.052568e-02	ci left: 1.464600e-01	ci right 1.495021e-01	k: 31075	n:210000
MOAP1   210000 perm   55 sec   (3790 perm/sec)   p_kst 1.479762e-01   p_cons 1.181429e-02   p_joint 8.142857e-03

Outputting figure to mutsig2_images.part000000000106/MOAP1.2_1060_210000_0.14798_0.011814_0.0081429.png
                gene_name: MOAP1
               theta_stop: 0.094 
                    nperm: 210000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0081 
     ci_joint_bounds_left: 0.0078 
    ci_joint_bounds_right: 0.0085 

Current progress: 92 percent done.
MOBKL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
MOBKL1A   10000 perm   2 sec   (6630 perm/sec)   p_kst 2.418000e-01   p_cons 6.582000e-01   p_joint 3.216000e-01

Outputting figure to mutsig2_images.part000000000106/MOBKL1A.2_675_10000_0.2418_0.6582_0.3216.png
                gene_name: MOBKL1A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 93 percent done.
MOBKL2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
KS ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
MOBKL2B   10000 perm   1 sec   (7057 perm/sec)   p_kst 5.806000e-01   p_cons 1.102000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
KS ci ratio: 2.382168e-02	ci left: 5.682637e-01	ci right 5.820145e-01	k: 11503	n:20000
MOBKL2B   20000 perm   3 sec   (6048 perm/sec)   p_kst 5.751500e-01   p_cons 1.109500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOBKL2B.2_663_20000_0.57515_0.11095_1.png
                gene_name: MOBKL2B
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
MOCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
Cons ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
KS ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
MOCS1   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.355000e-01   p_cons 7.443000e-01   p_joint 9.397000e-01

Outputting figure to mutsig2_images.part000000000106/MOCS1.2_1321_10000_0.5355_0.7443_0.9397.png
                gene_name: MOCS1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 97 percent done.
MOGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
Cons ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
KS ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
MOGAT1   10000 perm   2 sec   (6662 perm/sec)   p_kst 2.817000e-01   p_cons 1.137000e-01   p_joint 1.565000e-01

Joint ci ratio: 7.315137e-02	ci left: 1.209384e-01	ci right 1.301708e-01	k: 2510	n:20000
Cons ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
KS ci ratio: 4.409823e-02	ci left: 2.769130e-01	ci right 2.894501e-01	k: 5663	n:20000
MOGAT1   20000 perm   3 sec   (5889 perm/sec)   p_kst 2.831500e-01   p_cons 1.140000e-01   p_joint 1.255000e-01

Outputting figure to mutsig2_images.part000000000106/MOGAT1.2_1032_20000_0.28315_0.114_0.1255.png
                gene_name: MOGAT1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
MON1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
MON1A   10000 perm   2 sec   (6084 perm/sec)   p_kst 3.323000e-01   p_cons 4.859000e-01   p_joint 8.471000e-01

Outputting figure to mutsig2_images.part000000000106/MON1A.2_1983_10000_0.3323_0.4859_0.8471.png
                gene_name: MON1A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000106
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 106 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 4422189: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000107> was used as the working directory.
Started at Wed Oct 24 18:00:21 2012
Results reported at Wed Oct 24 18:10:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000107.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000107.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 107  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000107.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    636.28 sec.
    Max Memory :      5404 MB
    Max Swap   :      7730 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
107
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 107
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 107: processing genes 9591 - 9680
Calculating significance of each gene.
Using projection method.
9591	MORC2	1
9592	MORC3	2.156465e-01
9593	MORC4	9.268195e-01
9594	MORF4	1
9595	MORF4L1	1.204837e-01
9596	MORF4L2	1
9597	MORN1	1
9598	MORN3	1
9599	MORN4	1
9600	MORN5	1
9601	MOS	5.534482e-01
9602	MOSC1	1
9603	MOSC2	4.066234e-02
9604	MOSPD1	1
9605	MOSPD2	7.195944e-01
9606	MOSPD3	5.482298e-01
9607	MOV10	7.265689e-01
9608	MOV10L1	9.956715e-01
9609	MOXD1	1.583690e-01
9610	MPDU1	1
9611	MPDZ	9.998973e-01
9612	MPEG1	1
9613	MPG	1
9614	MPHOSPH10	1.194094e-01
9615	MPHOSPH6	2.129851e-01
9616	MPHOSPH8	1
9617	MPHOSPH9	9.058251e-01
9618	MPI	1
9619	MPL	8.740426e-01
9620	MPND	1
9621	MPO	9.247130e-01
9622	MPP1	1
9623	MPP2	7.656515e-01
9624	MPP3	8.252852e-01
9625	MPP4	4.436276e-01
9626	MPP5	9.148785e-01
9627	MPP6	1
9628	MPP7	1
9629	MPPE1	1
9630	MPPED1	6.769367e-01
9631	MPPED2	6.451302e-03
9632	MPRIP	9.773126e-01
9633	MPST	1
9634	MPV17	5.931520e-02
9635	MPV17L	1
9636	MPV17L2	1
9637	MPZ	7.497524e-01
9638	MPZL1	3.308368e-01
9639	MPZL2	4.447060e-01
9640	MPZL3	7.161081e-01
9641	MR1	4.501368e-01
9642	MRAP	6.770329e-01
9643	MRAP2	2.637749e-01
9644	MRAS	7.932342e-01
9645	MRC2	5.832796e-01
9646	MRE11A	2.187356e-01
9647	MREG	3.012175e-01
9648	MRFAP1	4.378323e-01
9649	MRFAP1L1	1
9650	MRGPRD	8.386208e-01
9651	MRGPRE	4.800001e-01
9652	MRGPRF	4.981723e-02
9653	MRGPRX1	3.644992e-01
9654	MRGPRX2	8.218788e-02
9655	MRGPRX3	2.745771e-01
9656	MRGPRX4	7.565697e-02
9657	MRI1	5.252874e-01
9658	MRM1	8.122840e-01
9659	MRO	3.468169e-01
9660	MRP63	1
9661	MRPL1	2.721646e-01
9662	MRPL10	5.728759e-01
9663	MRPL11	1
9664	MRPL12	1
9665	MRPL13	4.340279e-01
9666	MRPL14	3.392603e-02
9667	MRPL15	5.525569e-01
9668	MRPL16	1.012366e-01
9669	MRPL17	3.908609e-01
9670	MRPL18	4.113243e-01
9671	MRPL19	1
9672	MRPL2	8.032369e-01
9673	MRPL20	5.900137e-01
9674	MRPL21	7.416461e-01
9675	MRPL22	4.341470e-01
9676	MRPL23	1
9677	MRPL24	9.710700e-02
9678	MRPL27	1
9679	MRPL28	1
9680	MRPL3	7.598081e-01
Done

Running MutSig 2:
Scatter job 107: processing genes 9591 - 9680
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
Cons ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
MRC2   10000 perm   2 sec   (4113 perm/sec)   p_kst 7.985000e-01   p_cons 5.274000e-01   p_joint 8.458000e-01

Outputting figure to mutsig2_images.part000000000107/MRC2.10_4560_10000_0.7985_0.5274_0.8458.png
                gene_name: MRC2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 2 percent done.
MOV10L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
MOV10L1   10000 perm   2 sec   (4550 perm/sec)   p_kst 1.170000e-01   p_cons 2.847000e-01   p_joint 8.870000e-02

Joint ci ratio: 7.067778e-02	ci left: 1.285686e-01	ci right 1.380383e-01	k: 2665	n:20000
Cons ci ratio: 4.506257e-02	ci left: 2.682737e-01	ci right 2.806919e-01	k: 5489	n:20000
KS ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
MOV10L1   20000 perm   5 sec   (4125 perm/sec)   p_kst 1.153000e-01   p_cons 2.744500e-01   p_joint 1.332500e-01

Outputting figure to mutsig2_images.part000000000107/MOV10L1.9_3811_20000_0.1153_0.27445_0.13325.png
                gene_name: MOV10L1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 4 percent done.
MOV10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
KS ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
MOV10   10000 perm   2 sec   (5112 perm/sec)   p_kst 9.359000e-01   p_cons 6.901000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MOV10.8_3092_10000_0.9359_0.6901_1.png
                gene_name: MOV10
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
MPDZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
KS ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
MPDZ   10000 perm   2 sec   (4261 perm/sec)   p_kst 9.700000e-03   p_cons 2.787000e-01   p_joint 1.240000e-02

Joint ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
Cons ci ratio: 4.287081e-02	ci left: 2.884364e-01	ci right 3.011233e-01	k: 5895	n:20000
KS ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
MPDZ   20000 perm   5 sec   (3869 perm/sec)   p_kst 9.350000e-03   p_cons 2.947500e-01   p_joint 2.020000e-02

Joint ci ratio: 1.915552e-01	ci left: 1.244696e-02	ci right 1.511510e-02	k: 412	n:30000
Cons ci ratio: 3.513626e-02	ci left: 2.880522e-01	ci right 2.983878e-01	k: 8796	n:30000
KS ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
MPDZ   30000 perm   8 sec   (3665 perm/sec)   p_kst 9.533333e-03   p_cons 2.932000e-01   p_joint 1.373333e-02

Joint ci ratio: 1.847870e-01	ci left: 1.009638e-02	ci right 1.217550e-02	k: 444	n:40000
Cons ci ratio: 3.053263e-02	ci left: 2.873478e-01	ci right 2.962824e-01	k: 11672	n:40000
KS ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
MPDZ   40000 perm   11 sec   (3567 perm/sec)   p_kst 9.100000e-03   p_cons 2.918000e-01   p_joint 1.110000e-02

Joint ci ratio: 1.949670e-01	ci left: 7.237827e-03	ci right 8.820093e-03	k: 400	n:50000
Cons ci ratio: 2.734395e-02	ci left: 2.872997e-01	ci right 2.952845e-01	k: 14564	n:50000
KS ci ratio: 1.817272e-01	ci left: 8.381736e-03	ci right 1.007598e-02	k: 460	n:50000
MPDZ   50000 perm   14 sec   (3491 perm/sec)   p_kst 9.200000e-03   p_cons 2.912800e-01   p_joint 8.000000e-03

Joint ci ratio: 1.512802e-01	ci left: 1.022893e-02	ci right 1.191886e-02	k: 663	n:60000
Cons ci ratio: 2.602679e-02	ci left: 2.707659e-01	ci right 2.779226e-01	k: 16460	n:60000
KS ci ratio: 1.659240e-01	ci left: 8.451539e-03	ci right 9.996492e-03	k: 552	n:60000
MPDZ   60000 perm   18 sec   (3421 perm/sec)   p_kst 9.200000e-03   p_cons 2.743333e-01   p_joint 1.105000e-02

Joint ci ratio: 1.150478e-01	ci left: 1.537490e-02	ci right 1.726550e-02	k: 1141	n:70000
Cons ci ratio: 2.409225e-02	ci left: 2.710967e-01	ci right 2.777220e-01	k: 19208	n:70000
KS ci ratio: 1.549754e-01	ci left: 8.354864e-03	ci right 9.771995e-03	k: 633	n:70000
MPDZ   70000 perm   21 sec   (3368 perm/sec)   p_kst 9.042857e-03   p_cons 2.744000e-01   p_joint 1.630000e-02

Joint ci ratio: 1.236222e-01	ci left: 1.164463e-02	ci right 1.319103e-02	k: 992	n:80000
Cons ci ratio: 2.252079e-02	ci left: 2.715840e-01	ci right 2.777824e-01	k: 21974	n:80000
KS ci ratio: 1.461486e-01	ci left: 8.260794e-03	ci right 9.575191e-03	k: 712	n:80000
MPDZ   80000 perm   24 sec   (3339 perm/sec)   p_kst 8.900000e-03   p_cons 2.746750e-01   p_joint 1.240000e-02

Joint ci ratio: 1.278753e-01	ci left: 9.672157e-03	ci right 1.100413e-02	k: 929	n:90000
Cons ci ratio: 2.122563e-02	ci left: 2.718963e-01	ci right 2.777404e-01	k: 24733	n:90000
KS ci ratio: 1.369423e-01	ci left: 8.404044e-03	ci right 9.650132e-03	k: 811	n:90000
MPDZ   90000 perm   27 sec   (3297 perm/sec)   p_kst 9.011111e-03   p_cons 2.748111e-01   p_joint 1.032222e-02

Joint ci ratio: 1.117741e-01	ci left: 1.147044e-02	ci right 1.283808e-02	k: 1214	n:100000
Cons ci ratio: 2.011481e-02	ci left: 2.724733e-01	ci right 2.780197e-01	k: 27524	n:100000
KS ci ratio: 1.297136e-01	ci left: 8.462650e-03	ci right 9.646090e-03	k: 904	n:100000
MPDZ   100000 perm   31 sec   (3248 perm/sec)   p_kst 9.040000e-03   p_cons 2.752400e-01   p_joint 1.214000e-02

Joint ci ratio: 9.527970e-02	ci left: 1.443198e-02	ci right 1.588466e-02	k: 1666	n:110000
Cons ci ratio: 1.922449e-02	ci left: 2.716558e-01	ci right 2.769379e-01	k: 30172	n:110000
KS ci ratio: 1.237085e-01	ci left: 8.485579e-03	ci right 9.613262e-03	k: 994	n:110000
MPDZ   110000 perm   34 sec   (3199 perm/sec)   p_kst 9.036364e-03   p_cons 2.742909e-01   p_joint 1.514545e-02

Joint ci ratio: 8.210416e-02	ci left: 1.787572e-02	ci right 1.941434e-02	k: 2236	n:120000
Cons ci ratio: 1.842649e-02	ci left: 2.713283e-01	ci right 2.763827e-01	k: 32862	n:120000
KS ci ratio: 1.187988e-01	ci left: 8.457212e-03	ci right 9.533385e-03	k: 1078	n:120000
MPDZ   120000 perm   38 sec   (3159 perm/sec)   p_kst 8.983333e-03   p_cons 2.738500e-01   p_joint 1.863333e-02

Joint ci ratio: 8.018105e-02	ci left: 1.732945e-02	ci right 1.878447e-02	k: 2346	n:130000
Cons ci ratio: 1.771854e-02	ci left: 2.710935e-01	ci right 2.759474e-01	k: 35557	n:130000
KS ci ratio: 1.145801e-01	ci left: 8.411538e-03	ci right 9.441315e-03	k: 1159	n:130000
MPDZ   130000 perm   42 sec   (3122 perm/sec)   p_kst 8.915385e-03   p_cons 2.735154e-01   p_joint 1.804615e-02

Joint ci ratio: 8.054842e-02	ci left: 1.596519e-02	ci right 1.731208e-02	k: 2328	n:140000
Cons ci ratio: 1.705722e-02	ci left: 2.715722e-01	ci right 2.762514e-01	k: 38347	n:140000
KS ci ratio: 1.102001e-01	ci left: 8.463283e-03	ci right 9.457215e-03	k: 1253	n:140000
MPDZ   140000 perm   45 sec   (3090 perm/sec)   p_kst 8.950000e-03   p_cons 2.739071e-01   p_joint 1.662857e-02

Joint ci ratio: 8.403175e-02	ci left: 1.369872e-02	ci right 1.490683e-02	k: 2144	n:150000
Cons ci ratio: 1.646591e-02	ci left: 2.719634e-01	ci right 2.764853e-01	k: 41133	n:150000
KS ci ratio: 1.067271e-01	ci left: 8.437381e-03	ci right 9.395080e-03	k: 1336	n:150000
MPDZ   150000 perm   49 sec   (3060 perm/sec)   p_kst 8.906667e-03   p_cons 2.742200e-01   p_joint 1.429333e-02

Joint ci ratio: 8.288334e-02	ci left: 1.321571e-02	ci right 1.436451e-02	k: 2205	n:160000
Cons ci ratio: 1.593611e-02	ci left: 2.722083e-01	ci right 2.765873e-01	k: 43903	n:160000
KS ci ratio: 1.029070e-01	ci left: 8.524767e-03	ci right 9.455656e-03	k: 1437	n:160000
MPDZ   160000 perm   53 sec   (3029 perm/sec)   p_kst 8.981250e-03   p_cons 2.743937e-01   p_joint 1.378125e-02

Joint ci ratio: 7.681390e-02	ci left: 1.450832e-02	ci right 1.567301e-02	k: 2564	n:170000
Cons ci ratio: 1.547012e-02	ci left: 2.720216e-01	ci right 2.762684e-01	k: 46604	n:170000
KS ci ratio: 1.015200e-01	ci left: 8.252530e-03	ci right 9.140817e-03	k: 1477	n:170000
MPDZ   170000 perm   57 sec   (2998 perm/sec)   p_kst 8.688235e-03   p_cons 2.741412e-01   p_joint 1.508235e-02

Joint ci ratio: 7.649940e-02	ci left: 1.382744e-02	ci right 1.493272e-02	k: 2587	n:180000
Cons ci ratio: 1.502408e-02	ci left: 2.723506e-01	ci right 2.764789e-01	k: 49394	n:180000
KS ci ratio: 9.865781e-02	ci left: 8.265293e-03	ci right 9.128420e-03	k: 1564	n:180000
MPDZ   180000 perm   61 sec   (2961 perm/sec)   p_kst 8.688889e-03   p_cons 2.744111e-01   p_joint 1.437222e-02

Outputting figure to mutsig2_images.part000000000107/MPDZ.7_6306_180000_0.0086889_0.27441_0.014372.png
                gene_name: MPDZ
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0087 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0091 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 9 percent done.
MPHOSPH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
MPHOSPH10   10000 perm   2 sec   (5229 perm/sec)   p_kst 9.724000e-01   p_cons 7.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPHOSPH10.7_2090_10000_0.9724_0.719_1.png
                gene_name: MPHOSPH10
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
MPPED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
Cons ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
MPPED2   10000 perm   2 sec   (5392 perm/sec)   p_kst 4.630000e-02   p_cons 5.143000e-01   p_joint 8.810000e-02

Joint ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
Cons ci ratio: 2.678436e-02	ci left: 5.101475e-01	ci right 5.240476e-01	k: 10342	n:20000
KS ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
MPPED2   20000 perm   4 sec   (4846 perm/sec)   p_kst 4.560000e-02   p_cons 5.171000e-01   p_joint 6.330000e-02

Joint ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
Cons ci ratio: 2.184069e-02	ci left: 5.120942e-01	ci right 5.234357e-01	k: 15533	n:30000
KS ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
MPPED2   30000 perm   6 sec   (4644 perm/sec)   p_kst 4.633333e-02   p_cons 5.177667e-01   p_joint 6.550000e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.895431e-02	ci left: 5.118143e-01	ci right 5.216333e-01	k: 20669	n:40000
KS ci ratio: 8.798714e-02	ci left: 4.519117e-02	ci right 4.937487e-02	k: 1890	n:40000
MPPED2   40000 perm   9 sec   (4517 perm/sec)   p_kst 4.725000e-02   p_cons 5.167250e-01   p_joint 5.670000e-02

Outputting figure to mutsig2_images.part000000000107/MPPED2.7_981_40000_0.04725_0.51672_0.0567.png
                gene_name: MPPED2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 13 percent done.
MRGPRX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 9.169206e-03	ci left: 9.436740e-01	ci right 9.524627e-01	k: 9482	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
MRGPRX4   10000 perm   2 sec   (5563 perm/sec)   p_kst 2.858000e-01   p_cons 9.482000e-01   p_joint 4.912000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX4.7_973_10000_0.2858_0.9482_0.4912.png
                gene_name: MRGPRX4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 15 percent done.
MORC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
KS ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
MORC3   10000 perm   2 sec   (5042 perm/sec)   p_kst 2.140000e-01   p_cons 9.210000e-02   p_joint 1.493000e-01

Joint ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
Cons ci ratio: 8.663852e-02	ci left: 8.881317e-02	ci right 9.690565e-02	k: 1856	n:20000
KS ci ratio: 5.382621e-02	ci left: 2.039271e-01	ci right 2.152575e-01	k: 4191	n:20000
MORC3   20000 perm   4 sec   (4542 perm/sec)   p_kst 2.095500e-01   p_cons 9.280000e-02   p_joint 1.181500e-01

Outputting figure to mutsig2_images.part000000000107/MORC3.6_2888_20000_0.20955_0.0928_0.11815.png
                gene_name: MORC3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 17 percent done.
MORF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MORF4   10000 perm   2 sec   (6211 perm/sec)   p_kst 1   p_cons 3.529000e-01   p_joint 5.945000e-01

Outputting figure to mutsig2_images.part000000000107/MORF4.6_711_10000_1_0.3529_0.5945.png
                gene_name: MORF4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 19 percent done.
MOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
MOXD1   10000 perm   2 sec   (5710 perm/sec)   p_kst 2.338000e-01   p_cons 4.169000e-01   p_joint 3.028000e-01

Outputting figure to mutsig2_images.part000000000107/MOXD1.6_1890_10000_0.2338_0.4169_0.3028.png
                gene_name: MOXD1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 21 percent done.
MPHOSPH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
MPHOSPH9   10000 perm   2 sec   (4679 perm/sec)   p_kst 4.470000e-01   p_cons 2.123000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH9.6_3176_10000_0.447_0.2123_0.3964.png
                gene_name: MPHOSPH9
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 23 percent done.
MRE11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
Cons ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
KS ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
MRE11A   10000 perm   2 sec   (5481 perm/sec)   p_kst 9.771000e-01   p_cons 2.495000e-01   p_joint 6.334000e-01

Outputting figure to mutsig2_images.part000000000107/MRE11A.6_2203_10000_0.9771_0.2495_0.6334.png
                gene_name: MRE11A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 26 percent done.
MPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
MPP1   10000 perm   2 sec   (5848 perm/sec)   p_kst 2.309000e-01   p_cons 9.408000e-01   p_joint 3.614000e-01

Outputting figure to mutsig2_images.part000000000107/MPP1.5_1465_10000_0.2309_0.9408_0.3614.png
                gene_name: MPP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 28 percent done.
MPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
MPP4   10000 perm   2 sec   (5969 perm/sec)   p_kst 1.570000e-02   p_cons 3.030000e-01   p_joint 3.320000e-02

Joint ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
Cons ci ratio: 4.304674e-02	ci left: 2.867474e-01	ci right 2.994129e-01	k: 5861	n:20000
KS ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
MPP4   20000 perm   4 sec   (5343 perm/sec)   p_kst 1.765000e-02   p_cons 2.930500e-01   p_joint 3.480000e-02

Joint ci ratio: 1.254912e-01	ci left: 2.952001e-02	ci right 3.350473e-02	k: 944	n:30000
Cons ci ratio: 3.508265e-02	ci left: 2.886823e-01	ci right 2.990243e-01	k: 8815	n:30000
KS ci ratio: 1.676370e-01	ci left: 1.639785e-02	ci right 1.942987e-02	k: 536	n:30000
MPP4   30000 perm   6 sec   (5117 perm/sec)   p_kst 1.786667e-02   p_cons 2.938333e-01   p_joint 3.146667e-02

Joint ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
Cons ci ratio: 3.033802e-02	ci left: 2.899858e-01	ci right 2.989440e-01	k: 11778	n:40000
KS ci ratio: 1.438544e-01	ci left: 1.691258e-02	ci right 1.955802e-02	k: 728	n:40000
MPP4   40000 perm   8 sec   (4909 perm/sec)   p_kst 1.820000e-02   p_cons 2.944500e-01   p_joint 2.912500e-02

Joint ci ratio: 1.132029e-01	ci left: 2.209268e-02	ci right 2.476304e-02	k: 1170	n:50000
Cons ci ratio: 2.714136e-02	ci left: 2.903672e-01	ci right 2.983766e-01	k: 14718	n:50000
KS ci ratio: 1.286856e-01	ci left: 1.704635e-02	ci right 1.941006e-02	k: 910	n:50000
MPP4   50000 perm   11 sec   (4761 perm/sec)   p_kst 1.820000e-02   p_cons 2.943600e-01   p_joint 2.340000e-02

Joint ci ratio: 8.653865e-02	ci left: 3.163388e-02	ci right 3.451152e-02	k: 1983	n:60000
Cons ci ratio: 2.481220e-02	ci left: 2.901238e-01	ci right 2.974295e-01	k: 17626	n:60000
KS ci ratio: 1.173205e-01	ci left: 1.719398e-02	ci right 1.935298e-02	k: 1095	n:60000
MPP4   60000 perm   13 sec   (4668 perm/sec)   p_kst 1.825000e-02   p_cons 2.937667e-01   p_joint 3.305000e-02

Joint ci ratio: 9.040312e-02	ci left: 2.497337e-02	ci right 2.735184e-02	k: 1830	n:70000
Cons ci ratio: 2.292257e-02	ci left: 2.912814e-01	ci right 2.980500e-01	k: 20626	n:70000
KS ci ratio: 1.092578e-01	ci left: 1.706968e-02	ci right 1.905627e-02	k: 1263	n:70000
MPP4   70000 perm   15 sec   (4574 perm/sec)   p_kst 1.804286e-02   p_cons 2.946571e-01   p_joint 2.614286e-02

Joint ci ratio: 1.007056e-01	ci left: 1.765063e-02	ci right 1.953452e-02	k: 1486	n:80000
Cons ci ratio: 2.146838e-02	ci left: 2.909938e-01	ci right 2.973212e-01	k: 23532	n:80000
KS ci ratio: 1.033577e-01	ci left: 1.674882e-02	ci right 1.858639e-02	k: 1412	n:80000
MPP4   80000 perm   18 sec   (4485 perm/sec)   p_kst 1.765000e-02   p_cons 2.941500e-01   p_joint 1.857500e-02

Joint ci ratio: 8.482705e-02	ci left: 2.219369e-02	ci right 2.417054e-02	k: 2085	n:90000
Cons ci ratio: 2.020956e-02	ci left: 2.918112e-01	ci right 2.977798e-01	k: 26531	n:90000
KS ci ratio: 9.690886e-02	ci left: 1.698955e-02	ci right 1.873061e-02	k: 1606	n:90000
MPP4   90000 perm   20 sec   (4402 perm/sec)   p_kst 1.784444e-02   p_cons 2.947889e-01   p_joint 2.316667e-02

Outputting figure to mutsig2_images.part000000000107/MPP4.5_1998_90000_0.017844_0.29479_0.023167.png
                gene_name: MPP4
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 30 percent done.
MRGPRX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
MRGPRX2   10000 perm   2 sec   (5962 perm/sec)   p_kst 9.737000e-01   p_cons 6.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRGPRX2.5_997_10000_0.9737_0.6256_1.png
                gene_name: MRGPRX2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
MRPL24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
Cons ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
KS ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
MRPL24   10000 perm   2 sec   (6094 perm/sec)   p_kst 5.467000e-01   p_cons 2.292000e-01   p_joint 3.177000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL24.5_671_10000_0.5467_0.2292_0.3177.png
                gene_name: MRPL24
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 34 percent done.
MORF4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
MORF4L1   10000 perm   2 sec   (5947 perm/sec)   p_kst 8.322000e-01   p_cons 4.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MORF4L1.4_1141_10000_0.8322_0.4057_1.png
                gene_name: MORF4L1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
MOSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
Cons ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
KS ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
MOSC2   10000 perm   2 sec   (5853 perm/sec)   p_kst 3.352000e-01   p_cons 7.195000e-01   p_joint 5.157000e-01

Outputting figure to mutsig2_images.part000000000107/MOSC2.4_1036_10000_0.3352_0.7195_0.5157.png
                gene_name: MOSC2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 38 percent done.
MPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.101236e-02	ci left: 6.053805e-01	ci right 6.245524e-01	k: 6150	n:10000
Cons ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
KS ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
MPO   10000 perm   2 sec   (5516 perm/sec)   p_kst 3.840000e-01   p_cons 6.170000e-01   p_joint 6.150000e-01

Outputting figure to mutsig2_images.part000000000107/MPO.4_2286_10000_0.384_0.617_0.615.png
                gene_name: MPO
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 40 percent done.
MRGPRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
Cons ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
MRGPRX1   10000 perm   2 sec   (6119 perm/sec)   p_kst 1.667000e-01   p_cons 2.928000e-01   p_joint 2.071000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX1.4_973_10000_0.1667_0.2928_0.2071.png
                gene_name: MRGPRX1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 43 percent done.
MRPL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
KS ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
MRPL14   10000 perm   1 sec   (6818 perm/sec)   p_kst 7.218000e-01   p_cons 3.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRPL14.4_446_10000_0.7218_0.3481_1.png
                gene_name: MRPL14
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
MRPL16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 1.451283e-02	ci left: 8.729587e-01	ci right 8.858194e-01	k: 8795	n:10000
KS ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
MRPL16   10000 perm   2 sec   (6666 perm/sec)   p_kst 5.108000e-01   p_cons 8.795000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL16.4_772_10000_0.5108_0.8795_0.6985.png
                gene_name: MRPL16
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 47 percent done.
MPEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
MPEG1   10000 perm   2 sec   (5820 perm/sec)   p_kst 9.653000e-01   p_cons 2.570000e-01   p_joint 6.643000e-01

Outputting figure to mutsig2_images.part000000000107/MPEG1.3_2155_10000_0.9653_0.257_0.6643.png
                gene_name: MPEG1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 49 percent done.
MPHOSPH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
Cons ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
MPHOSPH8   10000 perm   2 sec   (5799 perm/sec)   p_kst 2.999000e-01   p_cons 6.062000e-01   p_joint 4.048000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH8.3_2639_10000_0.2999_0.6062_0.4048.png
                gene_name: MPHOSPH8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
MPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
Cons ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
MPP6   10000 perm   2 sec   (6206 perm/sec)   p_kst 3.606000e-01   p_cons 2.678000e-01   p_joint 2.818000e-01

Outputting figure to mutsig2_images.part000000000107/MPP6.3_1667_10000_0.3606_0.2678_0.2818.png
                gene_name: MPP6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 53 percent done.
MPRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
Cons ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
KS ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
MPRIP   10000 perm   2 sec   (5422 perm/sec)   p_kst 9.502000e-01   p_cons 2.252000e-01   p_joint 5.487000e-01

Outputting figure to mutsig2_images.part000000000107/MPRIP.3_3246_10000_0.9502_0.2252_0.5487.png
                gene_name: MPRIP
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 55 percent done.
MPV17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
Cons ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
KS ci ratio: 7.396041e-02	ci left: 2.111242e-01	ci right 2.274396e-01	k: 2192	n:10000
MPV17   10000 perm   2 sec   (6598 perm/sec)   p_kst 2.192000e-01   p_cons 3.748000e-01   p_joint 3.895000e-01

Outputting figure to mutsig2_images.part000000000107/MPV17.3_559_10000_0.2192_0.3748_0.3895.png
                gene_name: MPV17
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 57 percent done.
MRGPRF
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 60 percent done.
MRGPRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
MRGPRX3   10000 perm   1 sec   (6667 perm/sec)   p_kst 1.048000e-01   p_cons 8.204000e-01   p_joint 3.595000e-01

Joint ci ratio: 4.443185e-02	ci left: 2.738840e-01	ci right 2.863800e-01	k: 5602	n:20000
Cons ci ratio: 1.277556e-02	ci left: 8.194596e-01	ci right 8.300459e-01	k: 16496	n:20000
KS ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
MRGPRX3   20000 perm   3 sec   (5882 perm/sec)   p_kst 1.091500e-01   p_cons 8.248000e-01   p_joint 2.801000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX3.3_973_20000_0.10915_0.8248_0.2801.png
                gene_name: MRGPRX3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 62 percent done.
MRPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
MRPL1   10000 perm   2 sec   (6385 perm/sec)   p_kst 4.965000e-01   p_cons 9.885000e-01   p_joint 8.844000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL1.3_1014_10000_0.4965_0.9885_0.8844.png
                gene_name: MRPL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 64 percent done.
MORC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
MORC4   10000 perm   2 sec   (6022 perm/sec)   p_kst 8.350000e-02   p_cons 6.400000e-03   p_joint 1.090000e-02

Joint ci ratio: 1.651402e-01	ci left: 2.513349e-02	ci right 2.970529e-02	k: 547	n:20000
Cons ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
KS ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
MORC4   20000 perm   4 sec   (5385 perm/sec)   p_kst 8.090000e-02   p_cons 7.400000e-03   p_joint 2.735000e-02

Joint ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
Cons ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
KS ci ratio: 7.704522e-02	ci left: 7.636479e-02	ci right 8.251695e-02	k: 2382	n:30000
MORC4   30000 perm   6 sec   (5138 perm/sec)   p_kst 7.940000e-02   p_cons 5.733333e-03   p_joint 5.870000e-02

Joint ci ratio: 8.368618e-02	ci left: 4.981976e-02	ci right 5.419557e-02	k: 2079	n:40000
Cons ci ratio: 2.555046e-01	ci left: 5.102800e-03	ci right 6.620287e-03	k: 233	n:40000
KS ci ratio: 6.594120e-02	ci left: 7.849198e-02	ci right 8.386900e-02	k: 3246	n:40000
MORC4   40000 perm   8 sec   (4978 perm/sec)   p_kst 8.115000e-02   p_cons 5.825000e-03   p_joint 5.197500e-02

Joint ci ratio: 7.498837e-02	ci left: 4.987349e-02	ci right 5.377875e-02	k: 2590	n:50000
Cons ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
KS ci ratio: 5.914442e-02	ci left: 7.836643e-02	ci right 8.316238e-02	k: 4037	n:50000
MORC4   50000 perm   10 sec   (4849 perm/sec)   p_kst 8.074000e-02   p_cons 5.760000e-03   p_joint 5.180000e-02

Joint ci ratio: 6.946440e-02	ci left: 4.864657e-02	ci right 5.216375e-02	k: 3023	n:60000
Cons ci ratio: 2.148658e-01	ci left: 4.923914e-03	ci right 6.124677e-03	k: 330	n:60000
KS ci ratio: 5.417149e-02	ci left: 7.808815e-02	ci right 8.245255e-02	k: 4815	n:60000
MORC4   60000 perm   13 sec   (4740 perm/sec)   p_kst 8.025000e-02   p_cons 5.500000e-03   p_joint 5.038333e-02

Joint ci ratio: 6.740712e-02	ci left: 4.453012e-02	ci right 4.765050e-02	k: 3225	n:70000
Cons ci ratio: 2.002790e-01	ci left: 4.897685e-03	ci right 6.001062e-03	k: 380	n:70000
KS ci ratio: 4.989129e-02	ci left: 7.901734e-02	ci right 8.307461e-02	k: 5672	n:70000
MORC4   70000 perm   15 sec   (4641 perm/sec)   p_kst 8.102857e-02   p_cons 5.428571e-03   p_joint 4.607143e-02

Joint ci ratio: 1.000901e-01	ci left: 1.787008e-02	ci right 1.976505e-02	k: 1504	n:80000
Cons ci ratio: 1.903175e-01	ci left: 4.772896e-03	ci right 5.788489e-03	k: 421	n:80000
KS ci ratio: 4.639484e-02	ci left: 8.002114e-02	ci right 8.383424e-02	k: 6553	n:80000
MORC4   80000 perm   18 sec   (4551 perm/sec)   p_kst 8.191250e-02   p_cons 5.262500e-03   p_joint 1.880000e-02

Joint ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
Cons ci ratio: 1.778859e-01	ci left: 4.889171e-03	ci right 5.854243e-03	k: 482	n:90000
KS ci ratio: 4.385579e-02	ci left: 7.974246e-02	ci right 8.332902e-02	k: 7337	n:90000
MORC4   90000 perm   20 sec   (4467 perm/sec)   p_kst 8.152222e-02   p_cons 5.355556e-03   p_joint 1.166667e-02

Joint ci ratio: 8.579276e-02	ci left: 1.957192e-02	ci right 2.133605e-02	k: 2044	n:100000
Cons ci ratio: 1.673011e-01	ci left: 5.003083e-03	ci right 5.925958e-03	k: 545	n:100000
KS ci ratio: 4.149823e-02	ci left: 8.021749e-02	ci right 8.362680e-02	k: 8191	n:100000
MORC4   100000 perm   23 sec   (4390 perm/sec)   p_kst 8.191000e-02   p_cons 5.450000e-03   p_joint 2.044000e-02

Joint ci ratio: 1.097987e-01	ci left: 1.082522e-02	ci right 1.209164e-02	k: 1259	n:110000
Cons ci ratio: 1.595956e-01	ci left: 5.019096e-03	ci right 5.898197e-03	k: 599	n:110000
KS ci ratio: 3.952214e-02	ci left: 8.046621e-02	ci right 8.371950e-02	k: 9029	n:110000
MORC4   110000 perm   26 sec   (4308 perm/sec)   p_kst 8.208182e-02   p_cons 5.445455e-03   p_joint 1.144545e-02

Joint ci ratio: 7.907776e-02	ci left: 1.927254e-02	ci right 2.086744e-02	k: 2407	n:120000
Cons ci ratio: 1.520492e-01	ci left: 5.089372e-03	ci right 5.934795e-03	k: 660	n:120000
KS ci ratio: 3.791070e-02	ci left: 8.025534e-02	ci right 8.336490e-02	k: 9816	n:120000
MORC4   120000 perm   28 sec   (4233 perm/sec)   p_kst 8.180000e-02   p_cons 5.500000e-03   p_joint 2.005833e-02

Joint ci ratio: 1.006619e-01	ci left: 1.094999e-02	ci right 1.211810e-02	k: 1498	n:130000
Cons ci ratio: 1.461954e-01	ci left: 5.097772e-03	ci right 5.909140e-03	k: 714	n:130000
KS ci ratio: 3.639006e-02	ci left: 8.045303e-02	ci right 8.344258e-02	k: 10652	n:130000
MORC4   130000 perm   31 sec   (4161 perm/sec)   p_kst 8.193846e-02   p_cons 5.492308e-03   p_joint 1.152308e-02

Joint ci ratio: 7.276811e-02	ci left: 1.956766e-02	ci right 2.105230e-02	k: 2842	n:140000
Cons ci ratio: 1.410618e-01	ci left: 5.098615e-03	ci right 5.879224e-03	k: 767	n:140000
KS ci ratio: 3.508544e-02	ci left: 8.042620e-02	ci right 8.330543e-02	k: 11460	n:140000
MORC4   140000 perm   34 sec   (4089 perm/sec)   p_kst 8.185714e-02   p_cons 5.478571e-03   p_joint 2.030000e-02

Joint ci ratio: 4.545440e-02	ci left: 4.616522e-02	ci right 4.831900e-02	k: 7085	n:150000
Cons ci ratio: 1.362668e-01	ci left: 5.112658e-03	ci right 5.866651e-03	k: 822	n:150000
KS ci ratio: 3.389974e-02	ci left: 8.045754e-02	ci right 8.323865e-02	k: 12276	n:150000
MORC4   150000 perm   37 sec   (4024 perm/sec)   p_kst 8.184000e-02   p_cons 5.480000e-03   p_joint 4.723333e-02

Joint ci ratio: 6.767759e-02	ci left: 1.984197e-02	ci right 2.123798e-02	k: 3285	n:160000
Cons ci ratio: 1.320811e-01	ci left: 5.113249e-03	ci right 5.842347e-03	k: 875	n:160000
KS ci ratio: 3.279665e-02	ci left: 8.062288e-02	ci right 8.331730e-02	k: 13114	n:160000
MORC4   160000 perm   40 sec   (3960 perm/sec)   p_kst 8.196250e-02   p_cons 5.468750e-03   p_joint 2.053125e-02

Joint ci ratio: 6.579534e-02	ci left: 1.977956e-02	ci right 2.113099e-02	k: 3476	n:170000
Cons ci ratio: 1.290998e-01	ci left: 5.045755e-03	ci right 5.747745e-03	k: 916	n:170000
KS ci ratio: 3.183198e-02	ci left: 8.059486e-02	ci right 8.320766e-02	k: 13922	n:170000
MORC4   170000 perm   44 sec   (3896 perm/sec)   p_kst 8.189412e-02   p_cons 5.388235e-03   p_joint 2.044706e-02

Joint ci ratio: 6.390199e-02	ci left: 1.982299e-02	ci right 2.113696e-02	k: 3685	n:180000
Cons ci ratio: 1.259158e-01	ci left: 5.018214e-03	ci right 5.697867e-03	k: 963	n:180000
KS ci ratio: 3.099355e-02	ci left: 8.035034e-02	ci right 8.288537e-02	k: 14690	n:180000
MORC4   180000 perm   47 sec   (3835 perm/sec)   p_kst 8.161111e-02   p_cons 5.350000e-03   p_joint 2.047222e-02

Joint ci ratio: 9.260781e-02	ci left: 8.909261e-03	ci right 9.779492e-03	k: 1774	n:190000
Cons ci ratio: 1.222292e-01	ci left: 5.054992e-03	ci right 5.718131e-03	k: 1022	n:190000
KS ci ratio: 3.018723e-02	ci left: 8.028397e-02	ci right 8.274986e-02	k: 15487	n:190000
MORC4   190000 perm   50 sec   (3776 perm/sec)   p_kst 8.151053e-02   p_cons 5.378947e-03   p_joint 9.336842e-03

Joint ci ratio: 9.041991e-02	ci left: 8.888838e-03	ci right 9.735476e-03	k: 1861	n:200000
Cons ci ratio: 1.191811e-01	ci left: 5.059242e-03	ci right 5.705221e-03	k: 1075	n:200000
KS ci ratio: 2.941027e-02	ci left: 8.037898e-02	ci right 8.278317e-02	k: 16315	n:200000
MORC4   200000 perm   54 sec   (3722 perm/sec)   p_kst 8.157500e-02   p_cons 5.375000e-03   p_joint 9.305000e-03

Joint ci ratio: 8.828868e-02	ci left: 8.889210e-03	ci right 9.714896e-03	k: 1952	n:210000
Cons ci ratio: 1.162985e-01	ci left: 5.067897e-03	ci right 5.698255e-03	k: 1129	n:210000
KS ci ratio: 2.874975e-02	ci left: 8.015818e-02	ci right 8.250102e-02	k: 17078	n:210000
MORC4   210000 perm   57 sec   (3669 perm/sec)   p_kst 8.132381e-02   p_cons 5.376190e-03   p_joint 9.295238e-03

Joint ci ratio: 8.604679e-02	ci left: 8.943141e-03	ci right 9.751684e-03	k: 2055	n:220000
Cons ci ratio: 1.129935e-01	ci left: 5.133361e-03	ci right 5.752507e-03	k: 1196	n:220000
KS ci ratio: 2.808216e-02	ci left: 8.021995e-02	ci right 8.250927e-02	k: 17899	n:220000
MORC4   220000 perm   61 sec   (3618 perm/sec)   p_kst 8.135909e-02   p_cons 5.436364e-03   p_joint 9.340909e-03

Joint ci ratio: 8.452246e-02	ci left: 8.873427e-03	ci right 9.660753e-03	k: 2130	n:230000
Cons ci ratio: 1.110198e-01	ci left: 5.091884e-03	ci right 5.694597e-03	k: 1239	n:230000
KS ci ratio: 2.743669e-02	ci left: 8.039791e-02	ci right 8.263874e-02	k: 18748	n:230000
MORC4   230000 perm   64 sec   (3568 perm/sec)   p_kst 8.151304e-02   p_cons 5.386957e-03   p_joint 9.260870e-03

Joint ci ratio: 8.258652e-02	ci left: 8.915749e-03	ci right 9.687838e-03	k: 2231	n:240000
Cons ci ratio: 1.085943e-01	ci left: 5.106649e-03	ci right 5.697059e-03	k: 1295	n:240000
KS ci ratio: 2.683824e-02	ci left: 8.053674e-02	ci right 8.273171e-02	k: 19591	n:240000
MORC4   240000 perm   68 sec   (3519 perm/sec)   p_kst 8.162917e-02   p_cons 5.395833e-03   p_joint 9.295833e-03

Joint ci ratio: 5.438255e-02	ci left: 1.980601e-02	ci right 2.091715e-02	k: 5089	n:250000
Cons ci ratio: 1.062027e-01	ci left: 5.132047e-03	ci right 5.711510e-03	k: 1354	n:250000
KS ci ratio: 2.632293e-02	ci left: 8.040650e-02	ci right 8.255521e-02	k: 20369	n:250000
MORC4   250000 perm   72 sec   (3475 perm/sec)   p_kst 8.147600e-02   p_cons 5.416000e-03   p_joint 2.035600e-02

Joint ci ratio: 5.350525e-02	ci left: 1.968544e-02	ci right 2.077144e-02	k: 5258	n:260000
Cons ci ratio: 1.039994e-01	ci left: 5.151876e-03	ci right 5.720772e-03	k: 1412	n:260000
KS ci ratio: 2.582888e-02	ci left: 8.032872e-02	ci right 8.243447e-02	k: 21158	n:260000
MORC4   260000 perm   76 sec   (3434 perm/sec)   p_kst 8.137692e-02   p_cons 5.430769e-03   p_joint 2.022308e-02

Joint ci ratio: 5.254569e-02	ci left: 1.966534e-02	ci right 2.073018e-02	k: 5452	n:270000
Cons ci ratio: 1.019278e-01	ci left: 5.170352e-03	ci right 5.729234e-03	k: 1470	n:270000
KS ci ratio: 2.532649e-02	ci left: 8.046327e-02	ci right 8.253091e-02	k: 22003	n:270000
MORC4   270000 perm   80 sec   (3393 perm/sec)   p_kst 8.149259e-02   p_cons 5.444444e-03   p_joint 2.019259e-02

Joint ci ratio: 5.168736e-02	ci left: 1.960804e-02	ci right 2.065192e-02	k: 5635	n:280000
Cons ci ratio: 1.000411e-01	ci left: 5.180646e-03	ci right 5.729667e-03	k: 1526	n:280000
KS ci ratio: 2.486832e-02	ci left: 8.049269e-02	ci right 8.252313e-02	k: 22821	n:280000
MORC4   280000 perm   84 sec   (3349 perm/sec)   p_kst 8.150357e-02   p_cons 5.450000e-03   p_joint 2.012500e-02

Joint ci ratio: 5.085638e-02	ci left: 1.956505e-02	ci right 2.058940e-02	k: 5821	n:290000
Cons ci ratio: 9.872679e-02	ci left: 5.139863e-03	ci right 5.676991e-03	k: 1567	n:290000
KS ci ratio: 2.447136e-02	ci left: 8.029407e-02	ci right 8.228672e-02	k: 23573	n:290000
MORC4   290000 perm   88 sec   (3310 perm/sec)   p_kst 8.128621e-02   p_cons 5.403448e-03   p_joint 2.007241e-02

Outputting figure to mutsig2_images.part000000000107/MORC4.2_2882_290000_0.081286_0.0054034_0.020072.png
                gene_name: MORC4
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.0054 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 66 percent done.
MORF4L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
Cons ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
KS ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
MORF4L2   10000 perm   1 sec   (7134 perm/sec)   p_kst 1.196000e-01   p_cons 8.618000e-01   p_joint 3.805000e-01

Joint ci ratio: 2.633785e-03	ci left: 9.896994e-01	ci right 9.923548e-01	k: 19822	n:20000
Cons ci ratio: 1.099110e-02	ci left: 8.593235e-01	ci right 8.688703e-01	k: 17283	n:20000
KS ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
MORF4L2   20000 perm   3 sec   (6226 perm/sec)   p_kst 1.232500e-01   p_cons 8.641500e-01   p_joint 9.911000e-01

Outputting figure to mutsig2_images.part000000000107/MORF4L2.2_871_20000_0.12325_0.86415_0.9911.png
                gene_name: MORF4L2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 68 percent done.
MOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
MOS   10000 perm   1 sec   (6682 perm/sec)   p_kst 1.682000e-01   p_cons 7.461000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000107/MOS.2_1044_10000_0.1682_0.7461_0.3683.png
                gene_name: MOS
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 70 percent done.
MOSPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
KS ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
MOSPD2   10000 perm   2 sec   (6461 perm/sec)   p_kst 6.893000e-01   p_cons 5.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MOSPD2.2_1617_10000_0.6893_0.5707_1.png
                gene_name: MOSPD2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
MOSPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
MOSPD3   10000 perm   1 sec   (6751 perm/sec)   p_kst 9.990000e-02   p_cons 8.599000e-01   p_joint 1.091000e-01

Joint ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
Cons ci ratio: 1.063270e-02	ci left: 8.670369e-01	ci right 8.763547e-01	k: 17435	n:20000
KS ci ratio: 8.258185e-02	ci left: 9.705339e-02	ci right 1.054629e-01	k: 2024	n:20000
MOSPD3   20000 perm   3 sec   (5965 perm/sec)   p_kst 1.012000e-01   p_cons 8.717500e-01   p_joint 1.328000e-01

Outputting figure to mutsig2_images.part000000000107/MOSPD3.2_728_20000_0.1012_0.87175_0.1328.png
                gene_name: MOSPD3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 74 percent done.
MPHOSPH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
Cons ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KS ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
MPHOSPH6   10000 perm   1 sec   (7081 perm/sec)   p_kst 7.973000e-01   p_cons 5.650000e-02   p_joint 1.569000e-01

Joint ci ratio: 7.157880e-02	ci left: 1.257128e-01	ci right 1.350949e-01	k: 2607	n:20000
Cons ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
KS ci ratio: 1.386388e-02	ci left: 7.942869e-01	ci right 8.054258e-01	k: 15998	n:20000
MPHOSPH6   20000 perm   3 sec   (6253 perm/sec)   p_kst 7.999000e-01   p_cons 5.720000e-02   p_joint 1.303500e-01

Joint ci ratio: 7.407965e-02	ci left: 8.219554e-02	ci right 8.855170e-02	k: 2560	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 1.124309e-02	ci left: 7.975121e-01	ci right 8.065626e-01	k: 24062	n:30000
MPHOSPH6   30000 perm   5 sec   (5929 perm/sec)   p_kst 8.020667e-01   p_cons 5.120000e-02   p_joint 8.533333e-02

Outputting figure to mutsig2_images.part000000000107/MPHOSPH6.2_503_30000_0.80207_0.0512_0.085333.png
                gene_name: MPHOSPH6
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 77 percent done.
MPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
KS ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
MPL   10000 perm   2 sec   (6430 perm/sec)   p_kst 1.219000e-01   p_cons 2.820000e-01   p_joint 1.356000e-01

Joint ci ratio: 8.064581e-02	ci left: 1.013733e-01	ci right 1.099417e-01	k: 2112	n:20000
Cons ci ratio: 4.407652e-02	ci left: 2.771116e-01	ci right 2.896514e-01	k: 5667	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
MPL   20000 perm   4 sec   (5684 perm/sec)   p_kst 1.220500e-01   p_cons 2.833500e-01   p_joint 1.056000e-01

Outputting figure to mutsig2_images.part000000000107/MPL.2_1956_20000_0.12205_0.28335_0.1056.png
                gene_name: MPL
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
MPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
Cons ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
MPP2   10000 perm   2 sec   (6501 perm/sec)   p_kst 7.950000e-02   p_cons 9.243000e-01   p_joint 1.075000e-01

Joint ci ratio: 2.767220e-02	ci left: 4.938458e-01	ci right 5.077540e-01	k: 10016	n:20000
Cons ci ratio: 7.788926e-03	ci left: 9.231539e-01	ci right 9.304214e-01	k: 18537	n:20000
KS ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
MPP2   20000 perm   4 sec   (5460 perm/sec)   p_kst 7.890000e-02   p_cons 9.268500e-01   p_joint 5.008000e-01

Outputting figure to mutsig2_images.part000000000107/MPP2.2_1707_20000_0.0789_0.92685_0.5008.png
                gene_name: MPP2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 81 percent done.
MPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
MPP3   10000 perm   1 sec   (6715 perm/sec)   p_kst 4.577000e-01   p_cons 1.881000e-01   p_joint 3.023000e-01

Outputting figure to mutsig2_images.part000000000107/MPP3.2_1830_10000_0.4577_0.1881_0.3023.png
                gene_name: MPP3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 83 percent done.
MPPED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
Cons ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
KS ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
MPPED1   10000 perm   1 sec   (7040 perm/sec)   p_kst 4.683000e-01   p_cons 9.890000e-01   p_joint 5.141000e-01

Outputting figure to mutsig2_images.part000000000107/MPPED1.2_885_10000_0.4683_0.989_0.5141.png
                gene_name: MPPED1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 85 percent done.
MPZL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
Cons ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
KS ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
MPZL1   10000 perm   1 sec   (6997 perm/sec)   p_kst 5.862000e-01   p_cons 2.238000e-01   p_joint 5.203000e-01

Outputting figure to mutsig2_images.part000000000107/MPZL1.2_834_10000_0.5862_0.2238_0.5203.png
                gene_name: MPZL1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 87 percent done.
MR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
Cons ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
MR1   10000 perm   1 sec   (6871 perm/sec)   p_kst 7.465000e-01   p_cons 5.921000e-01   p_joint 9.548000e-01

Outputting figure to mutsig2_images.part000000000107/MR1.2_1050_10000_0.7465_0.5921_0.9548.png
                gene_name: MR1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 89 percent done.
MRAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
KS ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
MRAP2   10000 perm   1 sec   (7187 perm/sec)   p_kst 9.881000e-01   p_cons 8.669000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRAP2.2_630_10000_0.9881_0.8669_1.png
                gene_name: MRAP2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
MREG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
MREG   10000 perm   1 sec   (6958 perm/sec)   p_kst 8.550000e-01   p_cons 1.195000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
KS ci ratio: 1.153738e-02	ci left: 8.473573e-01	ci right 8.572401e-01	k: 17047	n:20000
MREG   20000 perm   3 sec   (6160 perm/sec)   p_kst 8.523500e-01   p_cons 1.140500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MREG.2_665_20000_0.85235_0.11405_1.png
                gene_name: MREG
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MRI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MRI1   10000 perm   1 sec   (6688 perm/sec)   p_kst 1   p_cons 9.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRI1.2_1227_10000_1_0.9594_1.png
                gene_name: MRI1
               theta_stop: 0.0081 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
MRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.621153e-02	ci left: 5.296705e-01	ci right 5.493065e-01	k: 5395	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
MRO   10000 perm   1 sec   (6883 perm/sec)   p_kst 6.842000e-01   p_cons 5.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRO.2_920_10000_0.6842_0.5395_1.png
                gene_name: MRO
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MRPL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
Cons ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
MRPL17   10000 perm   1 sec   (7085 perm/sec)   p_kst 4.202000e-01   p_cons 3.668000e-01   p_joint 7.035000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL17.2_540_10000_0.4202_0.3668_0.7035.png
                gene_name: MRPL17
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000107
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 107 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 4422193: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000108> was used as the working directory.
Started at Wed Oct 24 18:00:21 2012
Results reported at Wed Oct 24 18:10:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000108.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000108.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 108  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000108.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    614.21 sec.
    Max Memory :      5278 MB
    Max Swap   :      7699 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
108
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 108
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 108: processing genes 9681 - 9771
Calculating significance of each gene.
Using projection method.
9681	MRPL30	5.739722e-01
9682	MRPL32	1
9683	MRPL33	1
9684	MRPL34	1
9685	MRPL35	1
9686	MRPL36	1
9687	MRPL37	3.029346e-01
9688	MRPL38	8.768065e-01
9689	MRPL39	2.028277e-01
9690	MRPL4	7.438406e-01
9691	MRPL40	1
9692	MRPL41	1
9693	MRPL42	3.293636e-01
9694	MRPL43	1
9695	MRPL44	7.863891e-01
9696	MRPL45	3.922975e-01
9697	MRPL46	1
9698	MRPL47	7.294853e-01
9699	MRPL48	1
9700	MRPL49	1
9701	MRPL50	2.755298e-01
9702	MRPL51	5.046381e-01
9703	MRPL52	1
9704	MRPL53	1.964591e-01
9705	MRPL54	1
9706	MRPL55	3.570113e-01
9707	MRPL9	1.909667e-01
9708	MRPS10	5.099621e-01
9709	MRPS11	1
9710	MRPS12	1
9711	MRPS14	2.080217e-01
9712	MRPS15	4.935608e-01
9713	MRPS16	5.009565e-01
9714	MRPS17	1
9715	MRPS18A	1
9716	MRPS18B	4.624992e-01
9717	MRPS18C	1
9718	MRPS2	6.961103e-01
9719	MRPS21	3.503410e-01
9720	MRPS22	9.148703e-01
9721	MRPS23	1.069633e-01
9722	MRPS24	1
9723	MRPS25	1
9724	MRPS26	1
9725	MRPS27	1
9726	MRPS28	1
9727	MRPS30	4.380783e-01
9728	MRPS31	6.089800e-01
9729	MRPS33	1
9730	MRPS34	1
9731	MRPS35	7.272560e-01
9732	MRPS36	1
9733	MRPS5	1.433862e-01
9734	MRPS6	4.320097e-01
9735	MRPS7	4.847214e-01
9736	MRPS9	5.277995e-01
9737	MRRF	5.666918e-01
9738	MRS2	7.939388e-01
9739	MRTO4	1
9740	MRVI1	1
9741	MS4A1	6.014328e-02
9742	MS4A10	2.481293e-01
9743	MS4A12	1.881066e-03
9744	MS4A13	1
9745	MS4A14	2.428479e-03
9746	MS4A15	2.408249e-01
9747	MS4A2	2.896600e-01
9748	MS4A3	6.863542e-02
9749	MS4A4A	5.869433e-02
9750	MS4A5	5.794525e-03
9751	MS4A6A	3.829785e-01
9752	MS4A6E	2.095691e-01
9753	MS4A7	2.898700e-01
9754	MS4A8B	6.931993e-01
9755	MSC	1
9756	MSGN1	3.574165e-02
9757	MSH2	8.646054e-01
9758	MSH3	7.779594e-01
In gene MSH4 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 2890    n = 1	mu =   5.69e-07
9759	MSH4	4.274087e-01
9760	MSH5	8.294080e-01
9761	MSH6	6.520053e-01
9762	MSI1	8.649203e-01
9763	MSI2	1
9764	MSL1	4.981694e-01
9765	MSL2	1
9766	MSL3	8.722158e-01
9767	MSL3L2	1
9768	MSLN	5.294583e-01
9769	MSLNL	8.025908e-01
9770	MSMB	4.860104e-02
9771	MSMP	1
Done

Running MutSig 2:
Scatter job 108: processing genes 9681 - 9771
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MS4A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
Cons ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
MS4A14   10000 perm   2 sec   (5314 perm/sec)   p_kst 4.578000e-01   p_cons 1.192000e-01   p_joint 3.215000e-01

Joint ci ratio: 4.706817e-02	ci left: 2.514010e-01	ci right 2.635696e-01	k: 5149	n:20000
Cons ci ratio: 7.396201e-02	ci left: 1.185766e-01	ci right 1.277333e-01	k: 2462	n:20000
KS ci ratio: 3.017834e-02	ci left: 4.506271e-01	ci right 4.644853e-01	k: 9151	n:20000
MS4A14   20000 perm   6 sec   (3350 perm/sec)   p_kst 4.575500e-01   p_cons 1.231000e-01   p_joint 2.574500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A14.11_2060_20000_0.45755_0.1231_0.25745.png
                gene_name: MS4A14
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 2 percent done.
MSH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
Cons ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
MSH4   10000 perm   2 sec   (4619 perm/sec)   p_kst 1.570000e-02   p_cons 2.765000e-01   p_joint 6.550000e-02

Joint ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
Cons ci ratio: 4.494408e-02	ci left: 2.693162e-01	ci right 2.817491e-01	k: 5510	n:20000
KS ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
MSH4   20000 perm   5 sec   (4233 perm/sec)   p_kst 1.435000e-02   p_cons 2.755000e-01   p_joint 4.560000e-02

Joint ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
Cons ci ratio: 3.681199e-02	ci left: 2.692235e-01	ci right 2.793535e-01	k: 8228	n:30000
KS ci ratio: 1.852866e-01	ci left: 1.333682e-02	ci right 1.609167e-02	k: 440	n:30000
MSH4   30000 perm   7 sec   (4078 perm/sec)   p_kst 1.466667e-02   p_cons 2.742667e-01   p_joint 4.133333e-02

Joint ci ratio: 1.017906e-01	ci left: 3.392739e-02	ci right 3.759041e-02	k: 1429	n:40000
Cons ci ratio: 3.200473e-02	ci left: 2.683647e-01	ci right 2.771183e-01	k: 10909	n:40000
KS ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
MSH4   40000 perm   10 sec   (3971 perm/sec)   p_kst 1.410000e-02   p_cons 2.727250e-01   p_joint 3.572500e-02

Joint ci ratio: 8.530615e-02	ci left: 3.878884e-02	ci right 4.226476e-02	k: 2025	n:50000
Cons ci ratio: 2.901997e-02	ci left: 2.634644e-01	ci right 2.712427e-01	k: 13367	n:50000
KS ci ratio: 1.458571e-01	ci left: 1.320050e-02	ci right 1.529645e-02	k: 711	n:50000
MSH4   50000 perm   13 sec   (3889 perm/sec)   p_kst 1.422000e-02   p_cons 2.673400e-01   p_joint 4.050000e-02

Joint ci ratio: 7.465419e-02	ci left: 4.229084e-02	ci right 4.558679e-02	k: 2635	n:60000
Cons ci ratio: 2.645953e-02	ci left: 2.642764e-01	ci right 2.713794e-01	k: 16069	n:60000
KS ci ratio: 1.354510e-01	ci left: 1.283345e-02	ci right 1.471401e-02	k: 825	n:60000
MSH4   60000 perm   16 sec   (3819 perm/sec)   p_kst 1.375000e-02   p_cons 2.678167e-01   p_joint 4.391667e-02

Joint ci ratio: 7.342092e-02	ci left: 3.769011e-02	ci right 4.057682e-02	k: 2738	n:70000
Cons ci ratio: 2.452208e-02	ci left: 2.641380e-01	ci right 2.707099e-01	k: 18719	n:70000
KS ci ratio: 1.253815e-01	ci left: 1.290731e-02	ci right 1.464762e-02	k: 963	n:70000
MSH4   70000 perm   19 sec   (3756 perm/sec)   p_kst 1.375714e-02   p_cons 2.674143e-01   p_joint 3.911429e-02

Joint ci ratio: 8.449339e-02	ci left: 2.509187e-02	ci right 2.731767e-02	k: 2095	n:80000
Cons ci ratio: 2.288376e-02	ci left: 2.652817e-01	ci right 2.714351e-01	k: 21468	n:80000
KS ci ratio: 1.141572e-01	ci left: 1.369519e-02	ci right 1.536529e-02	k: 1161	n:80000
MSH4   80000 perm   22 sec   (3696 perm/sec)   p_kst 1.451250e-02   p_cons 2.683500e-01   p_joint 2.618750e-02

Joint ci ratio: 7.973066e-02	ci left: 2.511171e-02	ci right 2.720787e-02	k: 2353	n:90000
Cons ci ratio: 2.155649e-02	ci left: 2.657948e-01	ci right 2.715979e-01	k: 24182	n:90000
KS ci ratio: 1.068535e-01	ci left: 1.394549e-02	ci right 1.553046e-02	k: 1325	n:90000
MSH4   90000 perm   25 sec   (3640 perm/sec)   p_kst 1.472222e-02   p_cons 2.686889e-01   p_joint 2.614444e-02

Joint ci ratio: 7.672374e-02	ci left: 2.446306e-02	ci right 2.642460e-02	k: 2543	n:100000
Cons ci ratio: 2.044509e-02	ci left: 2.660440e-01	ci right 2.715494e-01	k: 26879	n:100000
KS ci ratio: 1.014868e-01	ci left: 1.395343e-02	ci right 1.545491e-02	k: 1469	n:100000
MSH4   100000 perm   28 sec   (3588 perm/sec)   p_kst 1.469000e-02   p_cons 2.687900e-01   p_joint 2.543000e-02

Joint ci ratio: 7.236634e-02	ci left: 2.504076e-02	ci right 2.692979e-02	k: 2857	n:110000
Cons ci ratio: 1.947291e-02	ci left: 2.665895e-01	ci right 2.718409e-01	k: 29613	n:110000
KS ci ratio: 9.688560e-02	ci left: 1.395270e-02	ci right 1.538215e-02	k: 1612	n:110000
MSH4   110000 perm   31 sec   (3537 perm/sec)   p_kst 1.465455e-02   p_cons 2.692091e-01   p_joint 2.597273e-02

Outputting figure to mutsig2_images.part000000000108/MSH4.9_2891_110000_0.014655_0.26921_0.025973.png
                gene_name: MSH4
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 5 percent done.
MSH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
MSH6   10000 perm   2 sec   (4781 perm/sec)   p_kst 6.510000e-02   p_cons 8.500000e-03   p_joint 1.110000e-02

Joint ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
Cons ci ratio: 3.289497e-01	ci left: 5.891661e-03	ci right 8.255063e-03	k: 140	n:20000
KS ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
MSH6   20000 perm   5 sec   (4354 perm/sec)   p_kst 6.625000e-02   p_cons 7.000000e-03   p_joint 7.450000e-03

Joint ci ratio: 2.053554e-01	ci left: 1.076700e-02	ci right 1.326218e-02	k: 359	n:30000
Cons ci ratio: 2.904862e-01	ci left: 5.157558e-03	ci right 6.940142e-03	k: 180	n:30000
KS ci ratio: 8.434209e-02	ci left: 6.432686e-02	ci right 7.002398e-02	k: 2014	n:30000
MSH6   30000 perm   7 sec   (4182 perm/sec)   p_kst 6.713333e-02   p_cons 6.000000e-03   p_joint 1.196667e-02

Joint ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
Cons ci ratio: 2.555046e-01	ci left: 5.102800e-03	ci right 6.620287e-03	k: 233	n:40000
KS ci ratio: 7.280570e-02	ci left: 6.510948e-02	ci right 7.005353e-02	k: 2702	n:40000
MSH6   40000 perm   10 sec   (4082 perm/sec)   p_kst 6.755000e-02   p_cons 5.825000e-03   p_joint 1.017500e-02

Joint ci ratio: 1.261696e-01	ci left: 1.774379e-02	ci right 2.015252e-02	k: 946	n:50000
Cons ci ratio: 2.263996e-01	ci left: 5.285274e-03	ci right 6.653040e-03	k: 297	n:50000
KS ci ratio: 6.849394e-02	ci left: 5.937034e-02	ci right 6.360075e-02	k: 3073	n:50000
MSH6   50000 perm   12 sec   (4000 perm/sec)   p_kst 6.146000e-02   p_cons 5.940000e-03   p_joint 1.892000e-02

Joint ci ratio: 1.178695e-01	ci left: 1.703213e-02	ci right 1.918151e-02	k: 1085	n:60000
Cons ci ratio: 2.110525e-01	ci left: 5.113299e-03	ci right 6.335257e-03	k: 342	n:60000
KS ci ratio: 6.207737e-02	ci left: 6.037891e-02	ci right 6.426356e-02	k: 3738	n:60000
MSH6   60000 perm   15 sec   (3928 perm/sec)   p_kst 6.230000e-02   p_cons 5.700000e-03   p_joint 1.808333e-02

Joint ci ratio: 1.023049e-01	ci left: 1.949089e-02	ci right 2.160626e-02	k: 1437	n:70000
Cons ci ratio: 1.839887e-01	ci left: 5.849915e-03	ci right 7.048692e-03	k: 450	n:70000
KS ci ratio: 5.725008e-02	ci left: 6.097153e-02	ci right 6.457910e-02	k: 4393	n:70000
MSH6   70000 perm   18 sec   (3861 perm/sec)   p_kst 6.275714e-02   p_cons 6.428571e-03   p_joint 2.052857e-02

Joint ci ratio: 9.606908e-02	ci left: 1.940717e-02	ci right 2.137782e-02	k: 1630	n:80000
Cons ci ratio: 1.742327e-01	ci left: 5.739520e-03	ci right 6.846742e-03	k: 502	n:80000
KS ci ratio: 5.349416e-02	ci left: 6.121491e-02	ci right 6.459187e-02	k: 5031	n:80000
MSH6   80000 perm   21 sec   (3794 perm/sec)   p_kst 6.288750e-02   p_cons 6.275000e-03   p_joint 2.037500e-02

Joint ci ratio: 9.442634e-02	ci left: 1.790094e-02	ci right 1.968582e-02	k: 1690	n:90000
Cons ci ratio: 1.626669e-01	ci left: 5.889423e-03	ci right 6.942771e-03	k: 576	n:90000
KS ci ratio: 5.031163e-02	ci left: 6.159690e-02	ci right 6.478688e-02	k: 5686	n:90000
MSH6   90000 perm   24 sec   (3734 perm/sec)   p_kst 6.317778e-02   p_cons 6.400000e-03   p_joint 1.877778e-02

Joint ci ratio: 9.039036e-02	ci left: 1.762492e-02	ci right 1.930318e-02	k: 1845	n:100000
Cons ci ratio: 1.525467e-01	ci left: 6.059388e-03	ci right 7.069553e-03	k: 655	n:100000
KS ci ratio: 4.782235e-02	ci left: 6.145238e-02	ci right 6.447303e-02	k: 6295	n:100000
MSH6   100000 perm   27 sec   (3677 perm/sec)   p_kst 6.295000e-02   p_cons 6.550000e-03   p_joint 1.845000e-02

Joint ci ratio: 8.827984e-02	ci left: 1.683114e-02	ci right 1.839445e-02	k: 1936	n:110000
Cons ci ratio: 1.459165e-01	ci left: 6.042375e-03	ci right 7.002104e-03	k: 716	n:110000
KS ci ratio: 4.569408e-02	ci left: 6.127440e-02	ci right 6.414871e-02	k: 6897	n:110000
MSH6   110000 perm   30 sec   (3626 perm/sec)   p_kst 6.270000e-02   p_cons 6.509091e-03   p_joint 1.760000e-02

Joint ci ratio: 8.839217e-02	ci left: 1.541174e-02	ci right 1.684511e-02	k: 1934	n:120000
Cons ci ratio: 1.383911e-01	ci left: 6.181841e-03	ci right 7.108910e-03	k: 796	n:120000
KS ci ratio: 4.376146e-02	ci left: 6.130181e-02	ci right 6.405270e-02	k: 7520	n:120000
MSH6   120000 perm   34 sec   (3570 perm/sec)   p_kst 6.266667e-02   p_cons 6.633333e-03   p_joint 1.611667e-02

Joint ci ratio: 9.041267e-02	ci left: 1.360898e-02	ci right 1.490513e-02	k: 1852	n:130000
Cons ci ratio: 1.329167e-01	ci left: 6.204217e-03	ci right 7.094927e-03	k: 863	n:130000
KS ci ratio: 4.197532e-02	ci left: 6.154807e-02	ci right 6.419455e-02	k: 8172	n:130000
MSH6   130000 perm   37 sec   (3518 perm/sec)   p_kst 6.286154e-02   p_cons 6.638462e-03   p_joint 1.424615e-02

Joint ci ratio: 8.289600e-02	ci left: 1.506929e-02	ci right 1.637945e-02	k: 2200	n:140000
Cons ci ratio: 1.285318e-01	ci left: 6.175610e-03	ci right 7.030732e-03	k: 923	n:140000
KS ci ratio: 4.038163e-02	ci left: 6.178940e-02	ci right 6.434302e-02	k: 8828	n:140000
MSH6   140000 perm   40 sec   (3470 perm/sec)   p_kst 6.305714e-02   p_cons 6.592857e-03   p_joint 1.571429e-02

Joint ci ratio: 7.406284e-02	ci left: 1.765388e-02	ci right 1.901816e-02	k: 2749	n:150000
Cons ci ratio: 1.212490e-01	ci left: 6.500239e-03	ci right 7.345656e-03	k: 1037	n:150000
KS ci ratio: 3.902039e-02	ci left: 6.180861e-02	ci right 6.427498e-02	k: 9455	n:150000
MSH6   150000 perm   44 sec   (3424 perm/sec)   p_kst 6.303333e-02   p_cons 6.913333e-03   p_joint 1.832667e-02

Joint ci ratio: 6.886377e-02	ci left: 1.916598e-02	ci right 2.053900e-02	k: 3175	n:160000
Cons ci ratio: 1.173029e-01	ci left: 6.524490e-03	ci right 7.343530e-03	k: 1108	n:160000
KS ci ratio: 3.777814e-02	ci left: 6.185767e-02	ci right 6.424570e-02	k: 10087	n:160000
MSH6   160000 perm   47 sec   (3379 perm/sec)   p_kst 6.304375e-02   p_cons 6.925000e-03   p_joint 1.984375e-02

Joint ci ratio: 9.701848e-02	ci left: 9.050061e-03	ci right 9.978546e-03	k: 1616	n:170000
Cons ci ratio: 1.237827e-01	ci left: 5.501542e-03	ci right 6.233111e-03	k: 996	n:170000
KS ci ratio: 3.676472e-02	ci left: 6.152881e-02	ci right 6.383907e-02	k: 10655	n:170000
MSH6   170000 perm   51 sec   (3335 perm/sec)   p_kst 6.267647e-02   p_cons 5.858824e-03   p_joint 9.505882e-03

Joint ci ratio: 9.689332e-02	ci left: 8.574282e-03	ci right 9.452752e-03	k: 1621	n:180000
Cons ci ratio: 1.202177e-01	ci left: 5.519065e-03	ci right 6.230324e-03	k: 1056	n:180000
KS ci ratio: 3.569148e-02	ci left: 6.168352e-02	ci right 6.393058e-02	k: 11304	n:180000
MSH6   180000 perm   55 sec   (3291 perm/sec)   p_kst 6.280000e-02   p_cons 5.866667e-03   p_joint 9.005556e-03

Joint ci ratio: 9.703727e-02	ci left: 8.102366e-03	ci right 8.933787e-03	k: 1617	n:190000
Cons ci ratio: 1.172082e-01	ci left: 5.509464e-03	ci right 6.200480e-03	k: 1111	n:190000
KS ci ratio: 3.473652e-02	ci left: 6.172363e-02	ci right 6.391078e-02	k: 11934	n:190000
MSH6   190000 perm   59 sec   (3248 perm/sec)   p_kst 6.281053e-02   p_cons 5.847368e-03   p_joint 8.510526e-03

Joint ci ratio: 9.458467e-02	ci left: 8.112065e-03	ci right 8.922276e-03	k: 1702	n:200000
Cons ci ratio: 1.143646e-01	ci left: 5.505881e-03	ci right 6.178563e-03	k: 1167	n:200000
KS ci ratio: 3.380555e-02	ci left: 6.192911e-02	ci right 6.406358e-02	k: 12598	n:200000
MSH6   200000 perm   62 sec   (3206 perm/sec)   p_kst 6.299000e-02   p_cons 5.835000e-03   p_joint 8.510000e-03

Joint ci ratio: 9.275487e-02	ci left: 8.041987e-03	ci right 8.828815e-03	k: 1770	n:210000
Cons ci ratio: 1.115810e-01	ci left: 5.516712e-03	ci right 6.173232e-03	k: 1226	n:210000
KS ci ratio: 3.297748e-02	ci left: 6.200231e-02	ci right 6.408596e-02	k: 13238	n:210000
MSH6   210000 perm   66 sec   (3165 perm/sec)   p_kst 6.303810e-02   p_cons 5.838095e-03   p_joint 8.428571e-03

Joint ci ratio: 9.428740e-02	ci left: 7.427739e-03	ci right 8.167136e-03	k: 1714	n:220000
Cons ci ratio: 1.088211e-01	ci left: 5.544427e-03	ci right 6.186879e-03	k: 1289	n:220000
KS ci ratio: 3.224214e-02	ci left: 6.194312e-02	ci right 6.397751e-02	k: 13850	n:220000
MSH6   220000 perm   70 sec   (3124 perm/sec)   p_kst 6.295455e-02   p_cons 5.859091e-03   p_joint 7.790909e-03

Joint ci ratio: 9.609810e-02	ci left: 6.837301e-03	ci right 7.531728e-03	k: 1651	n:230000
Cons ci ratio: 1.068137e-01	ci left: 5.510658e-03	ci right 6.136677e-03	k: 1338	n:230000
KS ci ratio: 3.158071e-02	ci left: 6.179029e-02	ci right 6.377727e-02	k: 14439	n:230000
MSH6   230000 perm   75 sec   (3086 perm/sec)   p_kst 6.277826e-02   p_cons 5.817391e-03   p_joint 7.178261e-03

Joint ci ratio: 9.412499e-02	ci left: 6.837142e-03	ci right 7.516508e-03	k: 1721	n:240000
Cons ci ratio: 1.048754e-01	ci left: 5.483861e-03	ci right 6.094834e-03	k: 1388	n:240000
KS ci ratio: 3.089918e-02	ci left: 6.187397e-02	ci right 6.381994e-02	k: 15082	n:240000
MSH6   240000 perm   79 sec   (3051 perm/sec)   p_kst 6.284167e-02   p_cons 5.783333e-03   p_joint 7.170833e-03

Joint ci ratio: 9.180536e-02	ci left: 6.907484e-03	ci right 7.576017e-03	k: 1809	n:250000
Cons ci ratio: 1.026807e-01	ci left: 5.498279e-03	ci right 6.097265e-03	k: 1448	n:250000
KS ci ratio: 3.024251e-02	ci left: 6.201890e-02	ci right 6.392725e-02	k: 15742	n:250000
MSH6   250000 perm   83 sec   (3016 perm/sec)   p_kst 6.296800e-02   p_cons 5.792000e-03   p_joint 7.236000e-03

Joint ci ratio: 9.395911e-02	ci left: 6.337421e-03	ci right 6.965960e-03	k: 1728	n:260000
Cons ci ratio: 1.008538e-01	ci left: 5.485463e-03	ci right 6.071790e-03	k: 1501	n:260000
KS ci ratio: 2.962889e-02	ci left: 6.214162e-02	ci right 6.401429e-02	k: 16399	n:260000
MSH6   260000 perm   87 sec   (2982 perm/sec)   p_kst 6.307308e-02   p_cons 5.773077e-03   p_joint 6.646154e-03

Joint ci ratio: 9.508408e-02	ci left: 5.958000e-03	ci right 6.556376e-03	k: 1688	n:270000
Cons ci ratio: 9.915311e-02	ci left: 5.470071e-03	ci right 6.044320e-03	k: 1553	n:270000
KS ci ratio: 2.910402e-02	ci left: 6.204226e-02	ci right 6.387825e-02	k: 16998	n:270000
MSH6   270000 perm   92 sec   (2949 perm/sec)   p_kst 6.295556e-02   p_cons 5.751852e-03   p_joint 6.251852e-03

Outputting figure to mutsig2_images.part000000000108/MSH6.9_4123_270000_0.062956_0.0057519_0.0062519.png
                gene_name: MSH6
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0060 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 7 percent done.
MSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
MSH2   10000 perm   2 sec   (4569 perm/sec)   p_kst 4.270000e-02   p_cons 1.214000e-01   p_joint 4.350000e-02

Joint ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
Cons ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
KS ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
MSH2   20000 perm   5 sec   (4170 perm/sec)   p_kst 4.170000e-02   p_cons 1.203500e-01   p_joint 3.990000e-02

Joint ci ratio: 8.718238e-02	ci left: 6.037437e-02	ci right 6.591060e-02	k: 1893	n:30000
Cons ci ratio: 6.156950e-02	ci left: 1.153564e-01	ci right 1.227175e-01	k: 3570	n:30000
KS ci ratio: 1.038570e-01	ci left: 4.297420e-02	ci right 4.771435e-02	k: 1359	n:30000
MSH2   30000 perm   7 sec   (4007 perm/sec)   p_kst 4.530000e-02   p_cons 1.190000e-01   p_joint 6.310000e-02

Joint ci ratio: 1.005574e-01	ci left: 3.475662e-02	ci right 3.846104e-02	k: 1463	n:40000
Cons ci ratio: 5.120293e-02	ci left: 1.245180e-01	ci right 1.310861e-01	k: 5111	n:40000
KS ci ratio: 9.002989e-02	ci left: 4.320920e-02	ci right 4.730714e-02	k: 1809	n:40000
MSH2   40000 perm   10 sec   (3904 perm/sec)   p_kst 4.522500e-02   p_cons 1.277750e-01   p_joint 3.657500e-02

Joint ci ratio: 9.186040e-02	ci left: 3.352351e-02	ci right 3.677075e-02	k: 1756	n:50000
Cons ci ratio: 4.581382e-02	ci left: 1.247862e-01	ci right 1.306571e-01	k: 6385	n:50000
KS ci ratio: 8.075930e-02	ci left: 4.317978e-02	ci right 4.683328e-02	k: 2249	n:50000
MSH2   50000 perm   13 sec   (3826 perm/sec)   p_kst 4.498000e-02   p_cons 1.277000e-01   p_joint 3.512000e-02

Outputting figure to mutsig2_images.part000000000108/MSH2.8_2869_50000_0.04498_0.1277_0.03512.png
                gene_name: MSH2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 10 percent done.
MS4A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.993534e-02	ci left: 6.220585e-01	ci right 6.410648e-01	k: 6316	n:10000
Cons ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
KS ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
MS4A12   10000 perm   2 sec   (5494 perm/sec)   p_kst 5.711000e-01   p_cons 3.547000e-01   p_joint 6.316000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A12.7_828_10000_0.5711_0.3547_0.6316.png
                gene_name: MS4A12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 12 percent done.
MS4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.075182e-02	ci left: 9.249261e-01	ci right 9.350217e-01	k: 9301	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MS4A5   10000 perm   2 sec   (6142 perm/sec)   p_kst 1   p_cons 9.301000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A5.6_623_10000_1_0.9301_1.png
                gene_name: MS4A5
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
MS4A4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
Cons ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
KS ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
MS4A4A   10000 perm   2 sec   (6232 perm/sec)   p_kst 2.401000e-01   p_cons 8.538000e-01   p_joint 3.889000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A4A.5_748_10000_0.2401_0.8538_0.3889.png
                gene_name: MS4A4A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 17 percent done.
MSLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
Cons ci ratio: 5.225565e-02	ci left: 3.505841e-01	ci right 3.694975e-01	k: 3600	n:10000
KS ci ratio: 1.533594e-02	ci left: 8.604938e-01	ci right 8.738915e-01	k: 8673	n:10000
MSLNL   10000 perm   2 sec   (4977 perm/sec)   p_kst 8.673000e-01   p_cons 3.600000e-01   p_joint 7.404000e-01

Outputting figure to mutsig2_images.part000000000108/MSLNL.5_3226_10000_0.8673_0.36_0.7404.png
                gene_name: MSLNL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 20 percent done.
MRPS30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
Cons ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
KS ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
MRPS30   10000 perm   2 sec   (6160 perm/sec)   p_kst 6.586000e-01   p_cons 2.819000e-01   p_joint 4.684000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS30.4_1340_10000_0.6586_0.2819_0.4684.png
                gene_name: MRPS30
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 22 percent done.
MRPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
KS ci ratio: 4.928435e-02	ci left: 3.778359e-01	ci right 3.970298e-01	k: 3874	n:10000
MRPS5   10000 perm   2 sec   (6400 perm/sec)   p_kst 3.874000e-01   p_cons 1.825000e-01   p_joint 2.585000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS5.4_1341_10000_0.3874_0.1825_0.2585.png
                gene_name: MRPS5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 24 percent done.
MS4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
MS4A1   10000 perm   2 sec   (6172 perm/sec)   p_kst 5.300000e-01   p_cons 9.880000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A1.4_918_10000_0.53_0.988_1.png
                gene_name: MS4A1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
MS4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
Cons ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
KS ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
MS4A3   10000 perm   2 sec   (6381 perm/sec)   p_kst 4.882000e-01   p_cons 6.248000e-01   p_joint 6.082000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A3.4_669_10000_0.4882_0.6248_0.6082.png
                gene_name: MS4A3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
MS4A6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 4.534601e-02	ci left: 4.178757e-01	ci right 4.373665e-01	k: 4276	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
MS4A6A   10000 perm   2 sec   (6583 perm/sec)   p_kst 1.323000e-01   p_cons 4.276000e-01   p_joint 1.790000e-01

Joint ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
Cons ci ratio: 3.213950e-02	ci left: 4.196319e-01	ci right 4.333895e-01	k: 8530	n:20000
KS ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
MS4A6A   20000 perm   3 sec   (5825 perm/sec)   p_kst 1.281000e-01   p_cons 4.265000e-01   p_joint 2.090500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A6A.4_798_20000_0.1281_0.4265_0.20905.png
                gene_name: MS4A6A
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 32 percent done.
MS4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
Cons ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
KS ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
MS4A7   10000 perm   1 sec   (6689 perm/sec)   p_kst 7.289000e-01   p_cons 2.469000e-01   p_joint 6.127000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A7.4_747_10000_0.7289_0.2469_0.6127.png
                gene_name: MS4A7
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 34 percent done.
MSGN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
Cons ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
KS ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
MSGN1   10000 perm   2 sec   (6415 perm/sec)   p_kst 1.247000e-01   p_cons 5.536000e-01   p_joint 2.065000e-01

Joint ci ratio: 4.902949e-02	ci left: 2.362258e-01	ci right 2.481492e-01	k: 4843	n:20000
Cons ci ratio: 2.510878e-02	ci left: 5.423224e-01	ci right 5.561632e-01	k: 10985	n:20000
KS ci ratio: 7.288606e-02	ci left: 1.217258e-01	ci right 1.309832e-01	k: 2526	n:20000
MSGN1   20000 perm   4 sec   (5676 perm/sec)   p_kst 1.263000e-01   p_cons 5.492500e-01   p_joint 2.421500e-01

Outputting figure to mutsig2_images.part000000000108/MSGN1.4_585_20000_0.1263_0.54925_0.24215.png
                gene_name: MSGN1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 37 percent done.
MSH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
Cons ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
KS ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
MSH3   10000 perm   2 sec   (5199 perm/sec)   p_kst 6.600000e-02   p_cons 1.670000e-01   p_joint 8.370000e-02

Joint ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
Cons ci ratio: 6.134406e-02	ci left: 1.643235e-01	ci right 1.747728e-01	k: 3390	n:20000
KS ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
MSH3   20000 perm   4 sec   (4678 perm/sec)   p_kst 6.355000e-02   p_cons 1.695000e-01   p_joint 5.570000e-02

Joint ci ratio: 8.633403e-02	ci left: 6.151734e-02	ci right 6.710074e-02	k: 1928	n:30000
Cons ci ratio: 5.179198e-02	ci left: 1.561648e-01	ci right 1.645011e-01	k: 4809	n:30000
KS ci ratio: 8.623851e-02	ci left: 6.164798e-02	ci right 6.723674e-02	k: 1932	n:30000
MSH3   30000 perm   7 sec   (4479 perm/sec)   p_kst 6.440000e-02   p_cons 1.603000e-01   p_joint 6.426667e-02

Outputting figure to mutsig2_images.part000000000108/MSH3.4_3510_30000_0.0644_0.1603_0.064267.png
                gene_name: MSH3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 39 percent done.
MSH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
MSH5   10000 perm   2 sec   (5767 perm/sec)   p_kst 7.230000e-02   p_cons 2.851000e-01   p_joint 1.349000e-01

Joint ci ratio: 8.280953e-02	ci left: 9.656264e-02	ci right 1.049538e-01	k: 2014	n:20000
Cons ci ratio: 4.514757e-02	ci left: 2.675291e-01	ci right 2.799367e-01	k: 5474	n:20000
KS ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
MSH5   20000 perm   4 sec   (5168 perm/sec)   p_kst 7.180000e-02   p_cons 2.737000e-01   p_joint 1.007000e-01

Outputting figure to mutsig2_images.part000000000108/MSH5.4_2655_20000_0.0718_0.2737_0.1007.png
                gene_name: MSH5
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 41 percent done.
MSLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
MSLN   10000 perm   2 sec   (5760 perm/sec)   p_kst 3.795000e-01   p_cons 7.758000e-01   p_joint 5.779000e-01

Outputting figure to mutsig2_images.part000000000108/MSLN.4_1957_10000_0.3795_0.7758_0.5779.png
                gene_name: MSLN
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 44 percent done.
MRPL37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MRPL37   10000 perm   2 sec   (6198 perm/sec)   p_kst 1   p_cons 1.457000e-01   p_joint 4.680000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL37.3_1300_10000_1_0.1457_0.468.png
                gene_name: MRPL37
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 46 percent done.
MRPL39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
Cons ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
MRPL39   10000 perm   2 sec   (6518 perm/sec)   p_kst 1.732000e-01   p_cons 4.600000e-02   p_joint 1.589000e-01

Joint ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
Cons ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
KS ci ratio: 6.126793e-02	ci left: 1.646692e-01	ci right 1.751270e-01	k: 3397	n:20000
MRPL39   20000 perm   3 sec   (5769 perm/sec)   p_kst 1.698500e-01   p_cons 4.350000e-02   p_joint 1.138500e-01

Joint ci ratio: 5.530650e-02	ci left: 1.394520e-01	ci right 1.474172e-01	k: 4302	n:30000
Cons ci ratio: 1.053257e-01	ci left: 4.180424e-02	ci right 4.648456e-02	k: 1323	n:30000
KS ci ratio: 5.037693e-02	ci left: 1.636860e-01	ci right 1.721784e-01	k: 5037	n:30000
MRPL39   30000 perm   5 sec   (5490 perm/sec)   p_kst 1.679000e-01   p_cons 4.410000e-02   p_joint 1.434000e-01

Joint ci ratio: 5.195130e-02	ci left: 1.213536e-01	ci right 1.278510e-01	k: 4983	n:40000
Cons ci ratio: 9.201772e-02	ci left: 4.139949e-02	ci right 4.541714e-02	k: 1735	n:40000
KS ci ratio: 4.394399e-02	ci left: 1.622664e-01	ci right 1.695822e-01	k: 6636	n:40000
MRPL39   40000 perm   8 sec   (5308 perm/sec)   p_kst 1.659000e-01   p_cons 4.337500e-02   p_joint 1.245750e-01

Outputting figure to mutsig2_images.part000000000108/MRPL39.3_1150_40000_0.1659_0.043375_0.12458.png
                gene_name: MRPL39
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 49 percent done.
MRPL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
KS ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
MRPL9   10000 perm   2 sec   (6464 perm/sec)   p_kst 5.675000e-01   p_cons 9.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL9.3_832_10000_0.5675_0.9025_1.png
                gene_name: MRPL9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
MRPS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
Cons ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
KS ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
MRPS14   10000 perm   1 sec   (6673 perm/sec)   p_kst 5.830000e-02   p_cons 2.335000e-01   p_joint 4.252000e-01

Joint ci ratio: 1.009147e-01	ci left: 6.659926e-02	ci right 7.372632e-02	k: 1402	n:20000
Cons ci ratio: 4.797122e-02	ci left: 2.442585e-01	ci right 2.563142e-01	k: 5005	n:20000
KS ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
MRPS14   20000 perm   3 sec   (5937 perm/sec)   p_kst 6.065000e-02   p_cons 2.502500e-01   p_joint 7.010000e-02

Joint ci ratio: 2.700974e-02	ci left: 4.068881e-01	ci right 4.180621e-01	k: 12374	n:30000
Cons ci ratio: 3.938533e-02	ci left: 2.433198e-01	ci right 2.531290e-01	k: 7446	n:30000
KS ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
MRPS14   30000 perm   5 sec   (5637 perm/sec)   p_kst 5.696667e-02   p_cons 2.482000e-01   p_joint 4.124667e-01

Outputting figure to mutsig2_images.part000000000108/MRPS14.3_399_30000_0.056967_0.2482_0.41247.png
                gene_name: MRPS14
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 54 percent done.
MRPS18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
MRPS18B   10000 perm   2 sec   (6406 perm/sec)   p_kst 4.229000e-01   p_cons 3.690000e-02   p_joint 7.170000e-02

Joint ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
Cons ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
KS ci ratio: 3.258359e-02	ci left: 4.129473e-01	ci right 4.266760e-01	k: 8396	n:20000
MRPS18B   20000 perm   3 sec   (5763 perm/sec)   p_kst 4.198000e-01   p_cons 4.030000e-02   p_joint 1.192000e-01

Joint ci ratio: 5.272848e-02	ci left: 1.514492e-01	ci right 1.596843e-01	k: 4666	n:30000
Cons ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
KS ci ratio: 2.686906e-02	ci left: 4.094162e-01	ci right 4.206002e-01	k: 12450	n:30000
MRPS18B   30000 perm   5 sec   (5480 perm/sec)   p_kst 4.150000e-01   p_cons 4.076667e-02   p_joint 1.555333e-01

Joint ci ratio: 6.881982e-02	ci left: 7.243723e-02	ci right 7.762467e-02	k: 3000	n:40000
Cons ci ratio: 1.009156e-01	ci left: 3.451270e-02	ci right 3.820500e-02	k: 1453	n:40000
KS ci ratio: 2.316811e-02	ci left: 4.122865e-01	ci right 4.219755e-01	k: 16685	n:40000
MRPS18B   40000 perm   8 sec   (5265 perm/sec)   p_kst 4.171250e-01   p_cons 3.632500e-02   p_joint 7.500000e-02

Joint ci ratio: 6.696352e-02	ci left: 6.198816e-02	ci right 6.630261e-02	k: 3206	n:50000
Cons ci ratio: 9.032639e-02	ci left: 3.465799e-02	ci right 3.795612e-02	k: 1814	n:50000
KS ci ratio: 2.071407e-02	ci left: 4.129926e-01	ci right 4.216570e-01	k: 20866	n:50000
MRPS18B   50000 perm   10 sec   (5112 perm/sec)   p_kst 4.173200e-01   p_cons 3.628000e-02   p_joint 6.412000e-02

Outputting figure to mutsig2_images.part000000000108/MRPS18B.3_805_50000_0.41732_0.03628_0.06412.png
                gene_name: MRPS18B
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 56 percent done.
MRPS23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
Cons ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
KS ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
MRPS23   10000 perm   2 sec   (6538 perm/sec)   p_kst 9.695000e-01   p_cons 6.970000e-02   p_joint 2.417000e-01

Joint ci ratio: 4.238609e-02	ci left: 2.931565e-01	ci right 3.059018e-01	k: 5990	n:20000
Cons ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
KS ci ratio: 4.948927e-03	ci left: 9.666594e-01	ci right 9.715030e-01	k: 19383	n:20000
MRPS23   20000 perm   3 sec   (5802 perm/sec)   p_kst 9.691500e-01   p_cons 7.040000e-02   p_joint 2.995000e-01

Joint ci ratio: 3.367065e-02	ci left: 3.059296e-01	ci right 3.164403e-01	k: 9335	n:30000
Cons ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
KS ci ratio: 4.058910e-03	ci left: 9.668387e-01	ci right 9.708031e-01	k: 29066	n:30000
MRPS23   30000 perm   5 sec   (5523 perm/sec)   p_kst 9.688667e-01   p_cons 7.063333e-02   p_joint 3.111667e-01

Outputting figure to mutsig2_images.part000000000108/MRPS23.3_593_30000_0.96887_0.070633_0.31117.png
                gene_name: MRPS23
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 59 percent done.
MRPS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
Cons ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
MRPS9   10000 perm   2 sec   (6208 perm/sec)   p_kst 1.191000e-01   p_cons 4.000000e-01   p_joint 1.540000e-01

Joint ci ratio: 5.450965e-02	ci left: 1.998192e-01	ci right 2.110666e-01	k: 4108	n:20000
Cons ci ratio: 3.306991e-02	ci left: 4.057653e-01	ci right 4.194601e-01	k: 8252	n:20000
KS ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
MRPS9   20000 perm   4 sec   (5508 perm/sec)   p_kst 1.168500e-01   p_cons 4.126000e-01   p_joint 2.054000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS9.3_1235_20000_0.11685_0.4126_0.2054.png
                gene_name: MRPS9
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
MSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
Cons ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
KS ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
MSC   10000 perm   1 sec   (6794 perm/sec)   p_kst 5.656000e-01   p_cons 2.530000e-01   p_joint 5.913000e-01

Outputting figure to mutsig2_images.part000000000108/MSC.3_629_10000_0.5656_0.253_0.5913.png
                gene_name: MSC
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 63 percent done.
MRPL45
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 66 percent done.
MRPL53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
MRPL53   10000 perm   1 sec   (7263 perm/sec)   p_kst 8.075000e-01   p_cons 9.290000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.898397e-02	ci left: 1.053025e-01	ci right 1.140113e-01	k: 2192	n:20000
KS ci ratio: 1.356879e-02	ci left: 8.011578e-01	ci right 8.121529e-01	k: 16134	n:20000
MRPL53   20000 perm   3 sec   (6393 perm/sec)   p_kst 8.067000e-01   p_cons 1.096000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL53.2_351_20000_0.8067_0.1096_1.png
                gene_name: MRPL53
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
MRPS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
MRPS15   10000 perm   1 sec   (6966 perm/sec)   p_kst 6.901000e-01   p_cons 8.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPS15.2_806_10000_0.6901_0.8639_1.png
                gene_name: MRPS15
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MRPS31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
Cons ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
KS ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
MRPS31   10000 perm   2 sec   (6550 perm/sec)   p_kst 5.680000e-02   p_cons 7.926000e-01   p_joint 8.481000e-01

Joint ci ratio: 4.072888e-02	ci left: 3.100561e-01	ci right 3.229973e-01	k: 6330	n:20000
Cons ci ratio: 1.414479e-02	ci left: 7.877215e-01	ci right 7.989931e-01	k: 15868	n:20000
KS ci ratio: 1.134813e-01	ci left: 5.309651e-02	ci right 5.953324e-02	k: 1125	n:20000
MRPS31   20000 perm   3 sec   (5831 perm/sec)   p_kst 5.625000e-02   p_cons 7.934000e-01   p_joint 3.165000e-01

Joint ci ratio: 2.557249e-02	ci left: 4.335735e-01	ci right 4.448383e-01	k: 13176	n:30000
Cons ci ratio: 1.156320e-02	ci left: 7.883704e-01	ci right 7.975728e-01	k: 23790	n:30000
KS ci ratio: 9.312609e-02	ci left: 5.316386e-02	ci right 5.838925e-02	k: 1672	n:30000
MRPS31   30000 perm   5 sec   (5545 perm/sec)   p_kst 5.573333e-02   p_cons 7.930000e-01   p_joint 4.392000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS31.2_1216_30000_0.055733_0.793_0.4392.png
                gene_name: MRPS31
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 73 percent done.
MRPS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
KS ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
MRPS7   10000 perm   1 sec   (6865 perm/sec)   p_kst 3.909000e-01   p_cons 4.800000e-02   p_joint 1

Joint ci ratio: 2.757199e-03	ci left: 9.887896e-01	ci right 9.915651e-01	k: 19805	n:20000
Cons ci ratio: 1.268072e-01	ci left: 4.270154e-02	ci right 4.853149e-02	k: 911	n:20000
KS ci ratio: 3.485274e-02	ci left: 3.806403e-01	ci right 3.941925e-01	k: 7748	n:20000
MRPS7   20000 perm   3 sec   (6076 perm/sec)   p_kst 3.874000e-01   p_cons 4.555000e-02   p_joint 9.902500e-01

Joint ci ratio: 2.274424e-03	ci left: 9.888439e-01	ci right 9.911264e-01	k: 29701	n:30000
Cons ci ratio: 1.033013e-01	ci left: 4.342931e-02	ci right 4.819248e-02	k: 1373	n:30000
KS ci ratio: 2.863271e-02	ci left: 3.789898e-01	ci right 3.900325e-01	k: 11535	n:30000
MRPS7   30000 perm   5 sec   (5771 perm/sec)   p_kst 3.845000e-01   p_cons 4.576667e-02   p_joint 9.900333e-01

Joint ci ratio: 2.284595e-02	ci left: 4.191003e-01	ci right 4.288108e-01	k: 16958	n:40000
Cons ci ratio: 9.066124e-02	ci left: 4.262216e-02	ci right 4.669427e-02	k: 1785	n:40000
KS ci ratio: 2.477482e-02	ci left: 3.801526e-01	ci right 3.897141e-01	k: 15397	n:40000
MRPS7   40000 perm   7 sec   (5568 perm/sec)   p_kst 3.849250e-01   p_cons 4.462500e-02   p_joint 4.239500e-01

Outputting figure to mutsig2_images.part000000000108/MRPS7.2_749_40000_0.38493_0.044625_0.42395.png
                gene_name: MRPS7
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 76 percent done.
MRRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
Cons ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
MRRF   10000 perm   1 sec   (6954 perm/sec)   p_kst 5.482000e-01   p_cons 8.427000e-01   p_joint 8.423000e-01

Outputting figure to mutsig2_images.part000000000108/MRRF.2_813_10000_0.5482_0.8427_0.8423.png
                gene_name: MRRF
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
MRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
Cons ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
KS ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
MRS2   10000 perm   2 sec   (6520 perm/sec)   p_kst 5.147000e-01   p_cons 2.544000e-01   p_joint 8.748000e-01

Outputting figure to mutsig2_images.part000000000108/MRS2.2_1376_10000_0.5147_0.2544_0.8748.png
                gene_name: MRS2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 80 percent done.
MS4A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
Cons ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
MS4A10   10000 perm   1 sec   (6780 perm/sec)   p_kst 8.770000e-01   p_cons 2.050000e-01   p_joint 4.345000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A10.2_832_10000_0.877_0.205_0.4345.png
                gene_name: MS4A10
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
MS4A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KS ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
MS4A15   10000 perm   1 sec   (6752 perm/sec)   p_kst 8.363000e-01   p_cons 3.500000e-02   p_joint 9.900000e-03

Joint ci ratio: 2.807961e-01	ci left: 8.295294e-03	ci right 1.105008e-02	k: 192	n:20000
Cons ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
KS ci ratio: 1.234906e-02	ci left: 8.291748e-01	ci right 8.395278e-01	k: 16688	n:20000
MS4A15   20000 perm   3 sec   (5979 perm/sec)   p_kst 8.344000e-01   p_cons 3.465000e-02   p_joint 9.600000e-03

Joint ci ratio: 2.335866e-01	ci left: 8.213484e-03	ci right 1.041645e-02	k: 278	n:30000
Cons ci ratio: 1.213745e-01	ci left: 3.155716e-02	ci right 3.566714e-02	k: 1007	n:30000
KS ci ratio: 1.007673e-02	ci left: 8.303130e-01	ci right 8.387554e-01	k: 25037	n:30000
MS4A15   30000 perm   5 sec   (5676 perm/sec)   p_kst 8.345667e-01   p_cons 3.356667e-02   p_joint 9.266667e-03

Joint ci ratio: 2.017461e-01	ci left: 8.406347e-03	ci right 1.031590e-02	k: 373	n:40000
Cons ci ratio: 1.060565e-01	ci left: 3.127086e-02	ci right 3.479735e-02	k: 1320	n:40000
KS ci ratio: 8.709782e-03	ci left: 8.314266e-01	ci right 8.387247e-01	k: 33404	n:40000
MS4A15   40000 perm   7 sec   (5520 perm/sec)   p_kst 8.351000e-01   p_cons 3.300000e-02   p_joint 9.325000e-03

Joint ci ratio: 1.827300e-01	ci left: 8.286262e-03	ci right 9.971469e-03	k: 455	n:50000
Cons ci ratio: 9.564909e-02	ci left: 3.094337e-02	ci right 3.407122e-02	k: 1624	n:50000
KS ci ratio: 7.790230e-03	ci left: 8.318179e-01	ci right 8.383432e-01	k: 41755	n:50000
MS4A15   50000 perm   9 sec   (5376 perm/sec)   p_kst 8.351000e-01   p_cons 3.248000e-02   p_joint 9.100000e-03

Joint ci ratio: 1.673036e-01	ci left: 8.307743e-03	ci right 9.840308e-03	k: 543	n:60000
Cons ci ratio: 8.761773e-02	ci left: 3.086706e-02	ci right 3.371174e-02	k: 1936	n:60000
KS ci ratio: 7.114894e-03	ci left: 8.319719e-01	ci right 8.379290e-01	k: 50098	n:60000
MS4A15   60000 perm   11 sec   (5252 perm/sec)   p_kst 8.349667e-01   p_cons 3.226667e-02   p_joint 9.050000e-03

Joint ci ratio: 1.537564e-01	ci left: 8.492248e-03	ci right 9.920309e-03	k: 643	n:70000
Cons ci ratio: 8.126400e-02	ci left: 3.086253e-02	ci right 3.349073e-02	k: 2251	n:70000
KS ci ratio: 6.554521e-03	ci left: 8.335667e-01	ci right 8.390625e-01	k: 58543	n:70000
MS4A15   70000 perm   14 sec   (5147 perm/sec)   p_kst 8.363286e-01   p_cons 3.215714e-02   p_joint 9.185714e-03

Joint ci ratio: 1.455320e-01	ci left: 8.333079e-03	ci right 9.652898e-03	k: 718	n:80000
Cons ci ratio: 7.628726e-02	ci left: 3.072980e-02	ci right 3.317929e-02	k: 2555	n:80000
KS ci ratio: 6.143855e-03	ci left: 8.331768e-01	ci right 8.383239e-01	k: 66861	n:80000
MS4A15   80000 perm   16 sec   (5038 perm/sec)   p_kst 8.357625e-01   p_cons 3.193750e-02   p_joint 8.975000e-03

Joint ci ratio: 1.370275e-01	ci left: 8.393311e-03	ci right 9.638645e-03	k: 810	n:90000
Cons ci ratio: 7.203442e-02	ci left: 3.070686e-02	ci right 3.301233e-02	k: 2866	n:90000
KS ci ratio: 5.786524e-03	ci left: 8.336092e-01	ci right 8.384580e-01	k: 75244	n:90000
MS4A15   90000 perm   18 sec   (4941 perm/sec)   p_kst 8.360444e-01   p_cons 3.184444e-02   p_joint 9.000000e-03

Joint ci ratio: 1.294972e-01	ci left: 8.491685e-03	ci right 9.677052e-03	k: 907	n:100000
Cons ci ratio: 6.885934e-02	ci left: 3.030804e-02	ci right 3.247925e-02	k: 3138	n:100000
KS ci ratio: 5.482252e-03	ci left: 8.341026e-01	ci right 8.386979e-01	k: 83641	n:100000
MS4A15   100000 perm   21 sec   (4849 perm/sec)   p_kst 8.364100e-01   p_cons 3.138000e-02   p_joint 9.070000e-03

Joint ci ratio: 1.246602e-01	ci left: 8.353417e-03	ci right 9.472706e-03	k: 979	n:110000
Cons ci ratio: 6.619008e-02	ci left: 2.987627e-02	ci right 3.193038e-02	k: 3398	n:110000
KS ci ratio: 5.222620e-03	ci left: 8.344474e-01	ci right 8.388258e-01	k: 92031	n:110000
MS4A15   110000 perm   23 sec   (4760 perm/sec)   p_kst 8.366455e-01   p_cons 3.089091e-02   p_joint 8.900000e-03

Joint ci ratio: 1.195276e-01	ci left: 8.352081e-03	ci right 9.421855e-03	k: 1065	n:120000
Cons ci ratio: 6.319655e-02	ci left: 3.008400e-02	ci right 3.205541e-02	k: 3727	n:120000
KS ci ratio: 5.002020e-03	ci left: 8.344455e-01	ci right 8.386382e-01	k: 100386	n:120000
MS4A15   120000 perm   26 sec   (4678 perm/sec)   p_kst 8.365500e-01   p_cons 3.105833e-02   p_joint 8.875000e-03

Joint ci ratio: 1.140849e-01	ci left: 8.486280e-03	ci right 9.520415e-03	k: 1169	n:130000
Cons ci ratio: 6.063729e-02	ci left: 3.020090e-02	ci right 3.209701e-02	k: 4048	n:130000
KS ci ratio: 4.807742e-03	ci left: 8.344165e-01	ci right 8.384454e-01	k: 108737	n:130000
MS4A15   130000 perm   28 sec   (4596 perm/sec)   p_kst 8.364385e-01   p_cons 3.113846e-02   p_joint 8.992308e-03

Joint ci ratio: 1.101115e-01	ci left: 8.477178e-03	ci right 9.471890e-03	k: 1255	n:140000
Cons ci ratio: 5.829002e-02	ci left: 3.037994e-02	ci right 3.221096e-02	k: 4380	n:140000
KS ci ratio: 4.638825e-03	ci left: 8.341360e-01	ci right 8.380215e-01	k: 117052	n:140000
MS4A15   140000 perm   31 sec   (4516 perm/sec)   p_kst 8.360857e-01   p_cons 3.128571e-02   p_joint 8.964286e-03

Joint ci ratio: 1.060094e-01	ci left: 8.554215e-03	ci right 9.518239e-03	k: 1354	n:150000
Cons ci ratio: 5.614661e-02	ci left: 3.058894e-02	ci right 3.236256e-02	k: 4720	n:150000
KS ci ratio: 4.487834e-03	ci left: 8.338150e-01	ci right 8.375720e-01	k: 125355	n:150000
MS4A15   150000 perm   34 sec   (4437 perm/sec)   p_kst 8.357000e-01   p_cons 3.146667e-02   p_joint 9.026667e-03

Joint ci ratio: 1.025478e-01	ci left: 8.585675e-03	ci right 9.519745e-03	k: 1447	n:160000
Cons ci ratio: 5.433996e-02	ci left: 3.064336e-02	ci right 3.236117e-02	k: 5039	n:160000
KS ci ratio: 4.347401e-03	ci left: 8.337433e-01	ci right 8.373820e-01	k: 133691	n:160000
MS4A15   160000 perm   37 sec   (4359 perm/sec)   p_kst 8.355687e-01   p_cons 3.149375e-02   p_joint 9.043750e-03

Joint ci ratio: 9.920980e-02	ci left: 8.648310e-03	ci right 9.556784e-03	k: 1546	n:170000
Cons ci ratio: 5.273277e-02	ci left: 3.065154e-02	ci right 3.231743e-02	k: 5351	n:170000
KS ci ratio: 4.218923e-03	ci left: 8.337113e-01	ci right 8.372419e-01	k: 142032	n:170000
MS4A15   170000 perm   40 sec   (4287 perm/sec)   p_kst 8.354824e-01   p_cons 3.147647e-02   p_joint 9.094118e-03

Outputting figure to mutsig2_images.part000000000108/MS4A15.2_747_170000_0.83548_0.031476_0.0090941.png
                gene_name: MS4A15
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0096 

Current progress: 85 percent done.
MS4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.087337e-02	ci left: 7.708384e-01	ci right 7.871988e-01	k: 7791	n:10000
Cons ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
MS4A2   10000 perm   2 sec   (5972 perm/sec)   p_kst 4.019000e-01   p_cons 7.888000e-01   p_joint 7.791000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A2.2_814_10000_0.4019_0.7888_0.7791.png
                gene_name: MS4A2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 88 percent done.
MS4A6E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
Cons ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
KS ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
MS4A6E   10000 perm   1 sec   (6819 perm/sec)   p_kst 9.295000e-01   p_cons 2.665000e-01   p_joint 4.354000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A6E.2_456_10000_0.9295_0.2665_0.4354.png
                gene_name: MS4A6E
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
MSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
Cons ci ratio: 1.418936e-02	ci left: 8.777662e-01	ci right 8.904090e-01	k: 8842	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
MSL1   10000 perm   1 sec   (7025 perm/sec)   p_kst 3.375000e-01   p_cons 8.842000e-01   p_joint 5.368000e-01

Outputting figure to mutsig2_images.part000000000108/MSL1.2_1088_10000_0.3375_0.8842_0.5368.png
                gene_name: MSL1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 93 percent done.
MSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.598880e-02	ci left: 8.503927e-01	ci right 8.641985e-01	k: 8574	n:10000
Cons ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
MSL2   10000 perm   2 sec   (5382 perm/sec)   p_kst 5.070000e-01   p_cons 9.729000e-01   p_joint 8.574000e-01

Outputting figure to mutsig2_images.part000000000108/MSL2.2_1742_10000_0.507_0.9729_0.8574.png
                gene_name: MSL2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 95 percent done.
MSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
KS ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
MSL3   10000 perm   2 sec   (5510 perm/sec)   p_kst 9.683000e-01   p_cons 4.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MSL3.2_1698_10000_0.9683_0.4648_1.png
                gene_name: MSL3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MSMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
Cons ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
KS ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
MSMB   10000 perm   2 sec   (6436 perm/sec)   p_kst 5.293000e-01   p_cons 8.396000e-01   p_joint 8.518000e-01

Outputting figure to mutsig2_images.part000000000108/MSMB.2_361_10000_0.5293_0.8396_0.8518.png
                gene_name: MSMB
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000108
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 108 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 4422199: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000109> was used as the working directory.
Started at Wed Oct 24 18:19:13 2012
Results reported at Wed Oct 24 21:30:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000109.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000109.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 109  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000109.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11638.78 sec.
    Max Memory :      9395 MB
    Max Swap   :     11937 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
109
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 109
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 109: processing genes 9772 - 9861
Calculating significance of each gene.
Using projection method.
9772	MSN	1
9773	MSR1	2.978035e-01
9774	MSRA	2.498114e-01
9775	MSRB2	3.069851e-02
9776	MSRB3	4.550773e-01
In gene MST1 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 2225    n = 1	mu =   5.35e-07
9777	MST1	3.454412e-01
9778	MST1R	1
9779	MST4	1.690628e-01
9780	MSTN	5.402577e-01
9781	MSTO1	1
9782	MSX1	5.822514e-02
9783	MSX2	7.247834e-01
9784	MT1A	1
9785	MT1B	1
9786	MT1E	1
9787	MT1F	1
9788	MT1G	1.022967e-01
9789	MT1H	1
9790	MT1M	1
9791	MT1X	1
9792	MT2A	1.925991e-01
9793	MT3	1
9794	MT4	1
9795	MTA1	9.712241e-01
9796	MTA2	9.500873e-01
9797	MTA3	1
9798	MTAP	1
9799	MTBP	8.323268e-01
9800	MTCH1	6.010594e-01
9801	MTCH2	1
9802	MTCP1	3.542026e-01
9803	MTCP1NB	3.455666e-02
9804	MTDH	9.276426e-01
9805	MTERF	1
9806	MTERFD1	1.068290e-01
9807	MTERFD2	7.408670e-01
9808	MTERFD3	6.767767e-01
9809	MTF1	8.285683e-01
9810	MTF2	8.558457e-01
9811	MTFMT	1
9812	MTFR1	9.097170e-01
9813	MTG1	3.015084e-01
9814	MTHFD1	9.902821e-01
9815	MTHFD1L	8.427622e-01
9816	MTHFD2	7.532005e-01
9817	MTHFD2L	6.463171e-01
9818	MTHFR	9.835721e-01
9819	MTHFS	1
9820	MTHFSD	2.061115e-01
9821	MTIF2	9.147568e-01
9822	MTIF3	1
9823	MTL5	5.511577e-02
9824	MTM1	1.344037e-01
9825	MTMR1	6.418756e-01
9826	MTMR10	1
9827	MTMR11	6.582536e-01
9828	MTMR12	1.756692e-01
9829	MTMR14	1
9830	MTMR15	8.295852e-01
9831	MTMR2	8.020488e-01
9832	MTMR3	9.943969e-01
9833	MTMR4	7.319045e-01
9834	MTMR6	1.046072e-01
9835	MTMR7	1.400373e-01
9836	MTMR8	8.586719e-03
9837	MTMR9	7.753899e-01
9838	MTNR1A	2.245699e-02
9839	MTNR1B	4.603669e-01
9840	MTO1	6.325806e-01
9841	MTOR	9.299954e-01
9842	MTP18	1
9843	MTPAP	4.162545e-01
9844	MTPN	1
9845	MTR	9.620722e-01
9846	MTRF1	9.237254e-01
9847	MTRF1L	1
9848	MTRR	7.593730e-01
9849	MTSS1	3.032548e-01
9850	MTSS1L	5.774171e-01
9851	MTTP	1.183122e-01
9852	MTUS1	9.588234e-01
9853	MTUS2	9.989039e-01
9854	MTX1	1
9855	MTX2	4.360136e-01
9856	MTX3	1
9857	MUC1	6.146244e-01
9858	MUC13	9.224838e-01
9859	MUC15	3.246141e-01
9860	MUC16	1
9861	MUC17	9.995688e-01
Done

Running MutSig 2:
Scatter job 109: processing genes 9772 - 9861
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MUC16
Processing conservation and coverage...
22% 45% 68% 91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.943566e-02	ci left: 6.298992e-01	ci right 6.488195e-01	k: 6394	n:10000
Cons ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
KS ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
MUC16   10000 perm   14 sec   (691 perm/sec)   p_kst 6.523000e-01   p_cons 4.779000e-01   p_joint 6.394000e-01

Outputting figure to mutsig2_images.part000000000109/MUC16.181_43860_10000_0.6523_0.4779_0.6394.png
                gene_name: MUC16
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
MUC17
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
Cons ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
MUC17   10000 perm   5 sec   (2053 perm/sec)   p_kst 1.370000e-02   p_cons 8.102000e-01   p_joint 5.370000e-02

Joint ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
Cons ci ratio: 1.330939e-02	ci left: 8.071720e-01	ci right 8.180370e-01	k: 16253	n:20000
KS ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
MUC17   20000 perm   10 sec   (1943 perm/sec)   p_kst 1.205000e-02   p_cons 8.126500e-01   p_joint 3.425000e-02

Joint ci ratio: 1.113082e-01	ci left: 3.748611e-02	ci right 4.193693e-02	k: 1190	n:30000
Cons ci ratio: 1.113440e-02	ci left: 8.006050e-01	ci right 8.096025e-01	k: 24154	n:30000
KS ci ratio: 2.059352e-01	ci left: 1.070373e-02	ci right 1.319213e-02	k: 357	n:30000
MUC17   30000 perm   16 sec   (1905 perm/sec)   p_kst 1.190000e-02   p_cons 8.051333e-01   p_joint 3.966667e-02

Joint ci ratio: 9.971205e-02	ci left: 3.534213e-02	ci right 3.907544e-02	k: 1487	n:40000
Cons ci ratio: 9.668234e-03	ci left: 8.003775e-01	ci right 8.081783e-01	k: 32172	n:40000
KS ci ratio: 1.721268e-01	ci left: 1.169744e-02	ci right 1.392412e-02	k: 511	n:40000
MUC17   40000 perm   21 sec   (1872 perm/sec)   p_kst 1.277500e-02   p_cons 8.043000e-01   p_joint 3.717500e-02

Joint ci ratio: 8.513112e-02	ci left: 3.894557e-02	ci right 4.242801e-02	k: 2033	n:50000
Cons ci ratio: 8.644216e-03	ci left: 8.009157e-01	ci right 8.078889e-01	k: 40221	n:50000
KS ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
MUC17   50000 perm   27 sec   (1847 perm/sec)   p_kst 1.296000e-02   p_cons 8.044200e-01   p_joint 4.066000e-02

Joint ci ratio: 8.002854e-02	ci left: 3.690915e-02	ci right 4.000237e-02	k: 2306	n:60000
Cons ci ratio: 7.765939e-03	ci left: 8.062339e-01	ci right 8.125361e-01	k: 48564	n:60000
KS ci ratio: 1.390812e-01	ci left: 1.215720e-02	ci right 1.399035e-02	k: 783	n:60000
MUC17   60000 perm   33 sec   (1819 perm/sec)   p_kst 1.305000e-02   p_cons 8.094000e-01   p_joint 3.843333e-02

Joint ci ratio: 7.724346e-02	ci left: 3.411333e-02	ci right 3.686820e-02	k: 2483	n:70000
Cons ci ratio: 7.300172e-03	ci left: 8.017004e-01	ci right 8.075886e-01	k: 56326	n:70000
KS ci ratio: 1.298230e-01	ci left: 1.202184e-02	ci right 1.370461e-02	k: 899	n:70000
MUC17   70000 perm   39 sec   (1795 perm/sec)   p_kst 1.284286e-02   p_cons 8.046571e-01   p_joint 3.547143e-02

Joint ci ratio: 7.206878e-02	ci left: 3.437577e-02	ci right 3.695805e-02	k: 2852	n:80000
Cons ci ratio: 6.839694e-03	ci left: 8.013827e-01	ci right 8.068952e-01	k: 64332	n:80000
KS ci ratio: 1.217127e-01	ci left: 1.202038e-02	ci right 1.359025e-02	k: 1023	n:80000
MUC17   80000 perm   45 sec   (1779 perm/sec)   p_kst 1.278750e-02   p_cons 8.041500e-01   p_joint 3.565000e-02

Joint ci ratio: 7.240040e-02	ci left: 3.040119e-02	ci right 3.269580e-02	k: 2838	n:90000
Cons ci ratio: 6.450000e-03	ci left: 8.014693e-01	ci right 8.066666e-01	k: 72367	n:90000
KS ci ratio: 1.157742e-01	ci left: 1.184909e-02	ci right 1.331591e-02	k: 1131	n:90000
MUC17   90000 perm   51 sec   (1762 perm/sec)   p_kst 1.256667e-02   p_cons 8.040778e-01   p_joint 3.153333e-02

Joint ci ratio: 7.102580e-02	ci left: 2.850909e-02	ci right 3.061832e-02	k: 2955	n:100000
Cons ci ratio: 6.120709e-03	ci left: 8.015158e-01	ci right 8.064466e-01	k: 80399	n:100000
KS ci ratio: 1.091661e-01	ci left: 1.203460e-02	ci right 1.343388e-02	k: 1272	n:100000
MUC17   100000 perm   57 sec   (1749 perm/sec)   p_kst 1.272000e-02   p_cons 8.039900e-01   p_joint 2.955000e-02

Joint ci ratio: 6.973053e-02	ci left: 2.695257e-02	ci right 2.890879e-02	k: 3071	n:110000
Cons ci ratio: 5.840055e-03	ci left: 8.014041e-01	ci right 8.061071e-01	k: 88414	n:110000
KS ci ratio: 1.083297e-01	ci left: 1.112597e-02	ci right 1.240905e-02	k: 1293	n:110000
MUC17   110000 perm   63 sec   (1739 perm/sec)   p_kst 1.175455e-02   p_cons 8.037636e-01   p_joint 2.791818e-02

Joint ci ratio: 6.845396e-02	ci left: 2.568867e-02	ci right 2.751764e-02	k: 3191	n:120000
Cons ci ratio: 5.600823e-03	ci left: 8.009725e-01	ci right 8.054795e-01	k: 96388	n:120000
KS ci ratio: 1.037787e-01	ci left: 1.113984e-02	ci right 1.236725e-02	k: 1409	n:120000
MUC17   120000 perm   69 sec   (1731 perm/sec)   p_kst 1.174167e-02   p_cons 8.032333e-01   p_joint 2.659167e-02

Joint ci ratio: 6.392168e-02	ci left: 2.721593e-02	ci right 2.902059e-02	k: 3654	n:130000
Cons ci ratio: 5.387685e-03	ci left: 8.006729e-01	ci right 8.050059e-01	k: 104370	n:130000
KS ci ratio: 9.972388e-02	ci left: 1.116004e-02	ci right 1.233882e-02	k: 1526	n:130000
MUC17   130000 perm   76 sec   (1720 perm/sec)   p_kst 1.173846e-02   p_cons 8.028462e-01   p_joint 2.810769e-02

Outputting figure to mutsig2_images.part000000000109/MUC17.82_13534_130000_0.011738_0.80285_0.028108.png
                gene_name: MUC17
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 4 percent done.
MTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
MTOR   10000 perm   3 sec   (3741 perm/sec)   p_kst 4.233000e-01   p_cons 4.000000e-03   p_joint 3.600000e-02

Joint ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
Cons ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
KS ci ratio: 3.203135e-02	ci left: 4.212783e-01	ci right 4.350426e-01	k: 8563	n:20000
MTOR   20000 perm   6 sec   (3466 perm/sec)   p_kst 4.281500e-01   p_cons 5.900000e-03   p_joint 3.090000e-02

Joint ci ratio: 1.025604e-01	ci left: 4.404707e-02	ci right 4.884126e-02	k: 1392	n:30000
Cons ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
KS ci ratio: 2.644023e-02	ci left: 4.172342e-01	ci right 4.284474e-01	k: 12685	n:30000
MTOR   30000 perm   9 sec   (3349 perm/sec)   p_kst 4.228333e-01   p_cons 5.766667e-03   p_joint 4.640000e-02

Joint ci ratio: 1.078423e-01	ci left: 3.024808e-02	ci right 3.372030e-02	k: 1278	n:40000
Cons ci ratio: 2.605941e-01	ci left: 4.892283e-03	ci right 6.380868e-03	k: 224	n:40000
KS ci ratio: 2.299154e-02	ci left: 4.160053e-01	ci right 4.257062e-01	k: 16834	n:40000
MTOR   40000 perm   12 sec   (3282 perm/sec)   p_kst 4.208500e-01   p_cons 5.600000e-03   p_joint 3.195000e-02

Joint ci ratio: 1.031368e-01	ci left: 2.662992e-02	ci right 2.954521e-02	k: 1403	n:50000
Cons ci ratio: 2.336056e-01	ci left: 4.945911e-03	ci right 6.272480e-03	k: 279	n:50000
KS ci ratio: 2.054716e-02	ci left: 4.169267e-01	ci right 4.256024e-01	k: 21063	n:50000
MTOR   50000 perm   16 sec   (3223 perm/sec)   p_kst 4.212600e-01   p_cons 5.580000e-03   p_joint 2.806000e-02

Joint ci ratio: 1.103452e-01	ci left: 1.946214e-02	ci right 2.175123e-02	k: 1235	n:60000
Cons ci ratio: 2.123011e-01	ci left: 5.050149e-03	ci right 6.265085e-03	k: 338	n:60000
KS ci ratio: 1.900967e-02	ci left: 4.108037e-01	ci right 4.187046e-01	k: 24885	n:60000
MTOR   60000 perm   19 sec   (3174 perm/sec)   p_kst 4.147500e-01   p_cons 5.633333e-03   p_joint 2.058333e-02

Joint ci ratio: 1.226371e-01	ci left: 1.350279e-02	ci right 1.528066e-02	k: 1006	n:70000
Cons ci ratio: 2.152781e-01	ci left: 4.206809e-03	ci right 5.234909e-03	k: 329	n:70000
KS ci ratio: 1.824097e-02	ci left: 3.938576e-01	ci right 4.011223e-01	k: 27824	n:70000
MTOR   70000 perm   22 sec   (3127 perm/sec)   p_kst 3.974857e-01   p_cons 4.700000e-03   p_joint 1.437143e-02

Joint ci ratio: 1.079180e-01	ci left: 1.534868e-02	ci right 1.711165e-02	k: 1297	n:80000
Cons ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
KS ci ratio: 1.706153e-02	ci left: 3.941313e-01	ci right 4.009261e-01	k: 31802	n:80000
MTOR   80000 perm   26 sec   (3081 perm/sec)   p_kst 3.975250e-01   p_cons 4.800000e-03   p_joint 1.621250e-02

Joint ci ratio: 9.669465e-02	ci left: 1.706548e-02	ci right 1.881024e-02	k: 1613	n:90000
Cons ci ratio: 1.885860e-01	ci left: 4.327151e-03	ci right 5.238552e-03	k: 429	n:90000
KS ci ratio: 1.611654e-02	ci left: 3.934129e-01	ci right 3.998160e-01	k: 35695	n:90000
MTOR   90000 perm   30 sec   (3040 perm/sec)   p_kst 3.966111e-01   p_cons 4.766667e-03   p_joint 1.792222e-02

Joint ci ratio: 1.014168e-01	ci left: 1.397293e-02	ci right 1.547541e-02	k: 1471	n:100000
Cons ci ratio: 1.773813e-01	ci left: 4.428824e-03	ci right 5.300276e-03	k: 485	n:100000
KS ci ratio: 1.528636e-02	ci left: 3.936759e-01	ci right 3.997501e-01	k: 39671	n:100000
MTOR   100000 perm   33 sec   (3004 perm/sec)   p_kst 3.967100e-01   p_cons 4.850000e-03   p_joint 1.471000e-02

Joint ci ratio: 9.213139e-02	ci left: 1.544442e-02	ci right 1.694488e-02	k: 1780	n:110000
Cons ci ratio: 1.687463e-01	ci left: 4.469774e-03	ci right 5.302115e-03	k: 536	n:110000
KS ci ratio: 1.456922e-02	ci left: 3.940069e-01	ci right 3.997985e-01	k: 43659	n:110000
MTOR   110000 perm   37 sec   (2969 perm/sec)   p_kst 3.969000e-01   p_cons 4.872727e-03   p_joint 1.618182e-02

Joint ci ratio: 9.479446e-02	ci left: 1.338354e-02	ci right 1.472343e-02	k: 1685	n:120000
Cons ci ratio: 1.620940e-01	ci left: 4.456770e-03	ci right 5.250783e-03	k: 581	n:120000
KS ci ratio: 1.395408e-02	ci left: 3.939554e-01	ci right 3.994996e-01	k: 47607	n:120000
MTOR   120000 perm   41 sec   (2931 perm/sec)   p_kst 3.967250e-01   p_cons 4.841667e-03   p_joint 1.404167e-02

Joint ci ratio: 8.194080e-02	ci left: 1.659062e-02	ci right 1.801564e-02	k: 2248	n:130000
Cons ci ratio: 1.550568e-01	ci left: 4.512858e-03	ci right 5.278715e-03	k: 635	n:130000
KS ci ratio: 1.342397e-02	ci left: 3.934475e-01	ci right 3.987725e-01	k: 51494	n:130000
MTOR   130000 perm   45 sec   (2892 perm/sec)   p_kst 3.961077e-01   p_cons 4.884615e-03   p_joint 1.729231e-02

Joint ci ratio: 7.900996e-02	ci left: 1.659543e-02	ci right 1.796753e-02	k: 2418	n:140000
Cons ci ratio: 1.485390e-01	ci left: 4.582206e-03	ci right 5.324240e-03	k: 692	n:140000
KS ci ratio: 1.294381e-02	ci left: 3.932441e-01	ci right 3.983745e-01	k: 55413	n:140000
MTOR   140000 perm   49 sec   (2861 perm/sec)   p_kst 3.958071e-01   p_cons 4.942857e-03   p_joint 1.727143e-02

Joint ci ratio: 8.564616e-02	ci left: 1.318308e-02	ci right 1.436916e-02	k: 2065	n:150000
Cons ci ratio: 1.425884e-01	ci left: 4.655749e-03	ci right 5.376922e-03	k: 751	n:150000
KS ci ratio: 1.250493e-02	ci left: 3.933306e-01	ci right 3.982867e-01	k: 59371	n:150000
MTOR   150000 perm   53 sec   (2830 perm/sec)   p_kst 3.958067e-01   p_cons 5.006667e-03   p_joint 1.376667e-02

Joint ci ratio: 7.474468e-02	ci left: 1.626792e-02	ci right 1.753717e-02	k: 2703	n:160000
Cons ci ratio: 1.379858e-01	ci left: 4.672331e-03	ci right 5.370790e-03	k: 802	n:160000
KS ci ratio: 1.210470e-02	ci left: 3.935337e-01	ci right 3.983325e-01	k: 63349	n:160000
MTOR   160000 perm   57 sec   (2800 perm/sec)   p_kst 3.959313e-01   p_cons 5.012500e-03   p_joint 1.689375e-02

Joint ci ratio: 7.268044e-02	ci left: 1.621170e-02	ci right 1.744015e-02	k: 2859	n:170000
Cons ci ratio: 1.336447e-01	ci left: 4.698665e-03	ci right 5.377207e-03	k: 855	n:170000
KS ci ratio: 1.174204e-02	ci left: 3.936564e-01	ci right 3.983119e-01	k: 67317	n:170000
MTOR   170000 perm   61 sec   (2770 perm/sec)   p_kst 3.959824e-01   p_cons 5.029412e-03   p_joint 1.681765e-02

Joint ci ratio: 7.087394e-02	ci left: 1.611849e-02	ci right 1.730826e-02	k: 3007	n:180000
Cons ci ratio: 1.303392e-01	ci left: 4.673997e-03	ci right 5.330990e-03	k: 899	n:180000
KS ci ratio: 1.142127e-02	ci left: 3.933011e-01	ci right 3.978244e-01	k: 71201	n:180000
MTOR   180000 perm   66 sec   (2742 perm/sec)   p_kst 3.955611e-01   p_cons 4.994444e-03   p_joint 1.670556e-02

Joint ci ratio: 6.914005e-02	ci left: 1.606129e-02	ci right 1.721668e-02	k: 3160	n:190000
Cons ci ratio: 1.276075e-01	ci left: 4.626631e-03	ci right 5.262303e-03	k: 938	n:190000
KS ci ratio: 1.112151e-02	ci left: 3.931532e-01	ci right 3.975553e-01	k: 75117	n:190000
MTOR   190000 perm   70 sec   (2717 perm/sec)   p_kst 3.953526e-01   p_cons 4.936842e-03   p_joint 1.663158e-02

Joint ci ratio: 6.448759e-02	ci left: 1.755468e-02	ci right 1.872935e-02	k: 3627	n:200000
Cons ci ratio: 1.246569e-01	ci left: 4.613198e-03	ci right 5.231286e-03	k: 983	n:200000
KS ci ratio: 1.083668e-02	ci left: 3.933511e-01	ci right 3.976419e-01	k: 79099	n:200000
MTOR   200000 perm   74 sec   (2689 perm/sec)   p_kst 3.954950e-01   p_cons 4.915000e-03   p_joint 1.813500e-02

Joint ci ratio: 6.338745e-02	ci left: 1.731845e-02	ci right 1.845682e-02	k: 3755	n:210000
Cons ci ratio: 1.209024e-01	ci left: 4.679703e-03	ci right 5.286466e-03	k: 1045	n:210000
KS ci ratio: 1.057436e-02	ci left: 3.934554e-01	ci right 3.976427e-01	k: 83065	n:210000
MTOR   210000 perm   79 sec   (2660 perm/sec)   p_kst 3.955476e-01   p_cons 4.976190e-03   p_joint 1.788095e-02

Joint ci ratio: 6.325112e-02	ci left: 1.661605e-02	ci right 1.770581e-02	k: 3774	n:220000
Cons ci ratio: 1.187126e-01	ci left: 4.638943e-03	ci right 5.228762e-03	k: 1084	n:220000
KS ci ratio: 1.032324e-02	ci left: 3.938737e-01	ci right 3.979654e-01	k: 87102	n:220000
MTOR   220000 perm   84 sec   (2631 perm/sec)   p_kst 3.959182e-01   p_cons 4.927273e-03   p_joint 1.715455e-02

Joint ci ratio: 6.207393e-02	ci left: 1.651415e-02	ci right 1.757634e-02	k: 3919	n:230000
Cons ci ratio: 1.164295e-01	ci left: 4.618705e-03	ci right 5.193881e-03	k: 1127	n:230000
KS ci ratio: 1.009360e-02	ci left: 3.940482e-01	ci right 3.980501e-01	k: 91091	n:230000
MTOR   230000 perm   88 sec   (2603 perm/sec)   p_kst 3.960478e-01   p_cons 4.900000e-03   p_joint 1.703913e-02

Joint ci ratio: 5.895582e-02	ci left: 1.755396e-02	ci right 1.862439e-02	k: 4340	n:240000
Cons ci ratio: 1.139316e-01	ci left: 4.628592e-03	ci right 5.191800e-03	k: 1177	n:240000
KS ci ratio: 9.880002e-03	ci left: 3.941425e-01	ci right 3.980600e-01	k: 95064	n:240000
MTOR   240000 perm   93 sec   (2576 perm/sec)   p_kst 3.961000e-01   p_cons 4.904167e-03   p_joint 1.808333e-02

Joint ci ratio: 5.868246e-02	ci left: 1.702114e-02	ci right 1.805409e-02	k: 4383	n:250000
Cons ci ratio: 1.114966e-01	ci left: 4.645586e-03	ci right 5.197987e-03	k: 1229	n:250000
KS ci ratio: 9.676909e-03	ci left: 3.943539e-01	ci right 3.981925e-01	k: 99068	n:250000
MTOR   250000 perm   98 sec   (2548 perm/sec)   p_kst 3.962720e-01   p_cons 4.916000e-03   p_joint 1.753200e-02

Joint ci ratio: 4.685810e-02	ci left: 2.559700e-02	ci right 2.682898e-02	k: 6814	n:260000
Cons ci ratio: 9.235933e-02	ci left: 6.562848e-03	ci right 7.202064e-03	k: 1788	n:260000
KS ci ratio: 8.888123e-03	ci left: 4.260547e-01	ci right 4.298623e-01	k: 111269	n:260000
MTOR   260000 perm   103 sec   (2523 perm/sec)   p_kst 4.279577e-01   p_cons 6.876923e-03   p_joint 2.620769e-02

Outputting figure to mutsig2_images.part000000000109/MTOR.20_7878_260000_0.42796_0.0068769_0.026208.png
                gene_name: MTOR
               theta_stop: 0.092 
                    nperm: 260000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.0069 
      ci_cons_bounds_left: 0.0066 
     ci_cons_bounds_right: 0.0072 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 6 percent done.
MTUS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
MTUS2   10000 perm   2 sec   (4470 perm/sec)   p_kst 9.150000e-02   p_cons 9.802000e-01   p_joint 2.920000e-01

Joint ci ratio: 4.833829e-02	ci left: 2.414319e-01	ci right 2.534416e-01	k: 4948	n:20000
Cons ci ratio: 4.137431e-03	ci left: 9.761325e-01	ci right 9.802268e-01	k: 19565	n:20000
KS ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
MTUS2   20000 perm   5 sec   (4071 perm/sec)   p_kst 9.375000e-02   p_cons 9.782500e-01   p_joint 2.474000e-01

Outputting figure to mutsig2_images.part000000000109/MTUS2.14_4254_20000_0.09375_0.97825_0.2474.png
                gene_name: MTUS2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 8 percent done.
MTMR8
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
Cons ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
MTMR8   10000 perm   2 sec   (5462 perm/sec)   p_kst 2.081000e-01   p_cons 3.910000e-01   p_joint 3.100000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR8.7_2171_10000_0.2081_0.391_0.31.png
                gene_name: MTMR8
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 10 percent done.
MTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.701213e-02	ci left: 3.117537e-01	ci right 3.301507e-01	k: 3209	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
MTR   10000 perm   2 sec   (4287 perm/sec)   p_kst 6.226000e-01   p_cons 6.240000e-02   p_joint 3.209000e-01

Joint ci ratio: 4.356132e-02	ci left: 2.818794e-01	ci right 2.944823e-01	k: 5763	n:20000
Cons ci ratio: 1.116030e-01	ci left: 5.484866e-02	ci right 6.138055e-02	k: 1161	n:20000
KS ci ratio: 2.146969e-02	ci left: 6.182477e-01	ci right 6.317159e-01	k: 12500	n:20000
MTR   20000 perm   5 sec   (3921 perm/sec)   p_kst 6.250000e-01   p_cons 5.805000e-02   p_joint 2.881500e-01

Joint ci ratio: 3.538081e-02	ci left: 2.852007e-01	ci right 2.955066e-01	k: 8710	n:30000
Cons ci ratio: 9.008614e-02	ci left: 5.668609e-02	ci right 6.206630e-02	k: 1780	n:30000
KS ci ratio: 1.650856e-02	ci left: 6.472811e-01	ci right 6.580893e-01	k: 19581	n:30000
MTR   30000 perm   8 sec   (3763 perm/sec)   p_kst 6.527000e-01   p_cons 5.933333e-02   p_joint 2.903333e-01

Outputting figure to mutsig2_images.part000000000109/MTR.11_3930_30000_0.6527_0.059333_0.29033.png
                gene_name: MTR
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 12 percent done.
MTMR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
MTMR12   10000 perm   2 sec   (4960 perm/sec)   p_kst 4.443000e-01   p_cons 5.910000e-02   p_joint 1.658000e-01

Joint ci ratio: 5.774745e-02	ci left: 1.818147e-01	ci right 1.926763e-01	k: 3744	n:20000
Cons ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
KS ci ratio: 3.136659e-02	ci left: 4.315576e-01	ci right 4.453603e-01	k: 8769	n:20000
MTMR12   20000 perm   4 sec   (4541 perm/sec)   p_kst 4.384500e-01   p_cons 5.855000e-02   p_joint 1.872000e-01

Joint ci ratio: 5.109160e-02	ci left: 1.598260e-01	ci right 1.682391e-01	k: 4920	n:30000
Cons ci ratio: 9.043755e-02	ci left: 5.626197e-02	ci right 6.162384e-02	k: 1767	n:30000
KS ci ratio: 2.523951e-02	ci left: 4.400311e-01	ci right 4.513128e-01	k: 13370	n:30000
MTMR12   30000 perm   7 sec   (4363 perm/sec)   p_kst 4.456667e-01   p_cons 5.890000e-02   p_joint 1.640000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR12.8_2308_30000_0.44567_0.0589_0.164.png
                gene_name: MTMR12
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 14 percent done.
MTMR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
Cons ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
KS ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
MTMR7   10000 perm   2 sec   (4717 perm/sec)   p_kst 4.048000e-01   p_cons 5.891000e-01   p_joint 5.511000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR7.8_2039_10000_0.4048_0.5891_0.5511.png
                gene_name: MTMR7
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 16 percent done.
MTSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
KS ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
MTSS1   10000 perm   2 sec   (5183 perm/sec)   p_kst 5.636000e-01   p_cons 5.919000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000109/MTSS1.8_2324_10000_0.5636_0.5919_0.8663.png
                gene_name: MTSS1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 18 percent done.
MTTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
MTTP   10000 perm   2 sec   (4917 perm/sec)   p_kst 3.000000e-04   p_cons 1.087000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
MTTP   20000 perm   4 sec   (4500 perm/sec)   p_kst 2.000000e-04   p_cons 1.082500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.566805e-02	ci left: 1.026695e-01	ci right 1.096736e-01	k: 3184	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
MTTP   30000 perm   7 sec   (4328 perm/sec)   p_kst 2.666667e-04   p_cons 1.061333e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.667399e-02	ci left: 1.037894e-01	ci right 1.098679e-01	k: 4272	n:40000
KS ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
MTTP   40000 perm   9 sec   (4211 perm/sec)   p_kst 2.250000e-04   p_cons 1.068000e-01   p_joint 0

Joint ci ratio: 3.460351e-01	ci left: 2.117910e-03	ci right 3.021389e-03	k: 127	n:50000
Cons ci ratio: 4.961708e-02	ci left: 1.082196e-01	ci right 1.137456e-01	k: 5548	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
MTTP   50000 perm   12 sec   (4136 perm/sec)   p_kst 2.400000e-04   p_cons 1.109600e-01   p_joint 2.540000e-03

Joint ci ratio: 3.196637e-01	ci left: 2.100991e-03	ci right 2.914990e-03	k: 149	n:60000
Cons ci ratio: 4.505013e-02	ci left: 1.095201e-01	ci right 1.145842e-01	k: 6722	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
MTTP   60000 perm   15 sec   (4065 perm/sec)   p_kst 2.500000e-04   p_cons 1.120333e-01   p_joint 2.483333e-03

Joint ci ratio: 3.155327e-01	ci left: 1.853398e-03	ci right 2.560311e-03	k: 153	n:70000
Cons ci ratio: 4.159348e-02	ci left: 1.102531e-01	ci right 1.149505e-01	k: 7881	n:70000
KS ci ratio: 8.552797e-01	ci left: 1.745302e-04	ci right 4.412282e-04	k: 20	n:70000
MTTP   70000 perm   18 sec   (4000 perm/sec)   p_kst 2.857143e-04   p_cons 1.125857e-01   p_joint 2.185714e-03

Joint ci ratio: 3.067232e-01	ci left: 1.725422e-03	ci right 2.361557e-03	k: 162	n:80000
Cons ci ratio: 3.962713e-02	ci left: 1.068237e-01	ci right 1.111547e-01	k: 8718	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
MTTP   80000 perm   20 sec   (3939 perm/sec)   p_kst 2.750000e-04   p_cons 1.089750e-01   p_joint 2.025000e-03

Joint ci ratio: 3.561220e-01	ci left: 1.105586e-03	ci right 1.594132e-03	k: 120	n:90000
Cons ci ratio: 3.674336e-02	ci left: 1.102001e-01	ci right 1.143360e-01	k: 10103	n:90000
KS ci ratio: 8.000555e-01	ci left: 1.620070e-04	ci right 3.834343e-04	k: 23	n:90000
MTTP   90000 perm   23 sec   (3880 perm/sec)   p_kst 2.555556e-04   p_cons 1.122556e-01   p_joint 1.333333e-03

Joint ci ratio: 3.449124e-01	ci left: 1.067981e-03	ci right 1.521740e-03	k: 128	n:100000
Cons ci ratio: 3.486949e-02	ci left: 1.102402e-01	ci right 1.141623e-01	k: 11219	n:100000
KS ci ratio: 7.838981e-01	ci left: 1.537784e-04	ci right 3.570801e-04	k: 24	n:100000
MTTP   100000 perm   26 sec   (3822 perm/sec)   p_kst 2.400000e-04   p_cons 1.121900e-01   p_joint 1.280000e-03

Joint ci ratio: 3.436020e-01	ci left: 9.791888e-04	ci right 1.393288e-03	k: 129	n:110000
Cons ci ratio: 3.317415e-02	ci left: 1.107647e-01	ci right 1.145103e-01	k: 12389	n:110000
KS ci ratio: 7.839073e-01	ci left: 1.397981e-04	ci right 3.246200e-04	k: 24	n:110000
MTTP   110000 perm   29 sec   (3760 perm/sec)   p_kst 2.181818e-04   p_cons 1.126273e-01   p_joint 1.172727e-03

Joint ci ratio: 3.752958e-01	ci left: 7.383441e-04	ci right 1.086505e-03	k: 108	n:120000
Cons ci ratio: 3.173586e-02	ci left: 1.110071e-01	ci right 1.145950e-01	k: 13535	n:120000
KS ci ratio: 7.278347e-01	ci left: 1.550537e-04	ci right 3.372141e-04	k: 28	n:120000
MTTP   120000 perm   32 sec   (3702 perm/sec)   p_kst 2.333333e-04   p_cons 1.127917e-01   p_joint 9.000000e-04

Joint ci ratio: 2.101548e-01	ci left: 2.388769e-03	ci right 2.956853e-03	k: 346	n:130000
Cons ci ratio: 3.113347e-02	ci left: 1.069976e-01	ci right 1.103891e-01	k: 14129	n:130000
KS ci ratio: 6.928767e-01	ci left: 1.620286e-04	ci right 3.384602e-04	k: 31	n:130000
MTTP   130000 perm   36 sec   (3645 perm/sec)   p_kst 2.384615e-04   p_cons 1.086846e-01   p_joint 2.661538e-03

Joint ci ratio: 2.142361e-01	ci left: 2.130189e-03	ci right 2.647908e-03	k: 333	n:140000
Cons ci ratio: 2.999978e-02	ci left: 1.070670e-01	ci right 1.103350e-01	k: 15217	n:140000
KS ci ratio: 6.625157e-01	ci left: 1.681913e-04	ci right 3.393521e-04	k: 34	n:140000
MTTP   140000 perm   39 sec   (3590 perm/sec)   p_kst 2.428571e-04   p_cons 1.086929e-01   p_joint 2.378571e-03

Joint ci ratio: 2.086907e-01	ci left: 2.101818e-03	ci right 2.597731e-03	k: 351	n:150000
Cons ci ratio: 2.896063e-02	ci left: 1.072682e-01	ci right 1.104270e-01	k: 16326	n:150000
KS ci ratio: 6.443624e-01	ci left: 1.680985e-04	ci right 3.322458e-04	k: 36	n:150000
MTTP   150000 perm   42 sec   (3538 perm/sec)   p_kst 2.400000e-04   p_cons 1.088400e-01   p_joint 2.340000e-03

Joint ci ratio: 2.175565e-01	ci left: 1.804760e-03	ci right 2.251093e-03	k: 323	n:160000
Cons ci ratio: 2.752622e-02	ci left: 1.109432e-01	ci right 1.140459e-01	k: 17998	n:160000
KS ci ratio: 6.047878e-01	ci left: 1.838955e-04	ci right 3.476162e-04	k: 41	n:160000
MTTP   160000 perm   46 sec   (3488 perm/sec)   p_kst 2.562500e-04   p_cons 1.124875e-01   p_joint 2.018750e-03

Joint ci ratio: 2.123785e-01	ci left: 1.787647e-03	ci right 2.217855e-03	k: 339	n:170000
Cons ci ratio: 2.668937e-02	ci left: 1.111010e-01	ci right 1.141122e-01	k: 19142	n:170000
KS ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
MTTP   170000 perm   49 sec   (3441 perm/sec)   p_kst 2.588235e-04   p_cons 1.126000e-01   p_joint 1.994118e-03

Joint ci ratio: 2.123904e-01	ci left: 1.688324e-03	ci right 2.094654e-03	k: 339	n:180000
Cons ci ratio: 2.590075e-02	ci left: 1.114249e-01	ci right 1.143542e-01	k: 20319	n:180000
KS ci ratio: 5.778970e-01	ci left: 1.823574e-04	ci right 3.345055e-04	k: 45	n:180000
MTTP   180000 perm   53 sec   (3395 perm/sec)   p_kst 2.500000e-04   p_cons 1.128833e-01   p_joint 1.883333e-03

Joint ci ratio: 2.061192e-01	ci left: 1.704202e-03	ci right 2.100716e-03	k: 360	n:190000
Cons ci ratio: 2.524504e-02	ci left: 1.111872e-01	ci right 1.140352e-01	k: 21395	n:190000
KS ci ratio: 5.717185e-01	ci left: 1.772568e-04	ci right 3.229214e-04	k: 46	n:190000
MTTP   190000 perm   57 sec   (3350 perm/sec)   p_kst 2.421053e-04   p_cons 1.126053e-01   p_joint 1.894737e-03

Joint ci ratio: 2.102535e-01	ci left: 1.552628e-03	ci right 1.922054e-03	k: 346	n:200000
Cons ci ratio: 2.461389e-02	ci left: 1.111581e-01	ci right 1.139332e-01	k: 22508	n:200000
KS ci ratio: 5.599300e-01	ci left: 1.769622e-04	ci right 3.181927e-04	k: 48	n:200000
MTTP   200000 perm   60 sec   (3306 perm/sec)   p_kst 2.400000e-04   p_cons 1.125400e-01   p_joint 1.730000e-03

Joint ci ratio: 2.130477e-01	ci left: 1.438098e-03	ci right 1.785415e-03	k: 337	n:210000
Cons ci ratio: 2.403643e-02	ci left: 1.110615e-01	ci right 1.137682e-01	k: 23606	n:210000
KS ci ratio: 5.599333e-01	ci left: 1.685352e-04	ci right 3.030413e-04	k: 48	n:210000
MTTP   210000 perm   64 sec   (3265 perm/sec)   p_kst 2.285714e-04   p_cons 1.124095e-01   p_joint 1.604762e-03

Joint ci ratio: 2.153001e-01	ci left: 1.342611e-03	ci right 1.670748e-03	k: 330	n:220000
Cons ci ratio: 2.347479e-02	ci left: 1.111689e-01	ci right 1.138140e-01	k: 24747	n:220000
KS ci ratio: 5.543075e-01	ci left: 1.647793e-04	ci right 2.944467e-04	k: 49	n:220000
MTTP   220000 perm   68 sec   (3224 perm/sec)   p_kst 2.227273e-04   p_cons 1.124864e-01   p_joint 1.500000e-03

Joint ci ratio: 2.102774e-01	ci left: 1.350096e-03	ci right 1.671372e-03	k: 346	n:230000
Cons ci ratio: 2.297226e-02	ci left: 1.110816e-01	ci right 1.136673e-01	k: 25845	n:230000
KS ci ratio: 5.435436e-01	ci left: 1.651037e-04	ci right 2.915358e-04	k: 51	n:230000
MTTP   230000 perm   72 sec   (3184 perm/sec)   p_kst 2.217391e-04   p_cons 1.123696e-01   p_joint 1.504348e-03

Joint ci ratio: 2.081915e-01	ci left: 1.321478e-03	ci right 1.632428e-03	k: 353	n:240000
Cons ci ratio: 2.248611e-02	ci left: 1.111306e-01	ci right 1.136621e-01	k: 26974	n:240000
KS ci ratio: 5.333833e-01	ci left: 1.654236e-04	ci right 2.888456e-04	k: 53	n:240000
MTTP   240000 perm   76 sec   (3145 perm/sec)   p_kst 2.208333e-04   p_cons 1.123917e-01   p_joint 1.470833e-03

Joint ci ratio: 2.140285e-01	ci left: 1.196628e-03	ci right 1.487131e-03	k: 334	n:250000
Cons ci ratio: 2.205788e-02	ci left: 1.109215e-01	ci right 1.133995e-01	k: 28039	n:250000
KS ci ratio: 5.333858e-01	ci left: 1.588065e-04	ci right 2.772922e-04	k: 53	n:250000
MTTP   250000 perm   80 sec   (3107 perm/sec)   p_kst 2.120000e-04   p_cons 1.121560e-01   p_joint 1.336000e-03

Joint ci ratio: 2.166397e-01	ci left: 1.121489e-03	ci right 1.397514e-03	k: 326	n:260000
Cons ci ratio: 2.162978e-02	ci left: 1.109433e-01	ci right 1.133730e-01	k: 29160	n:260000
KS ci ratio: 5.191588e-01	ci left: 1.627032e-04	ci right 2.796858e-04	k: 56	n:260000
MTTP   260000 perm   85 sec   (3069 perm/sec)   p_kst 2.153846e-04   p_cons 1.121538e-01   p_joint 1.253846e-03

Joint ci ratio: 2.127711e-01	ci left: 1.122007e-03	ci right 1.392585e-03	k: 338	n:270000
Cons ci ratio: 2.119849e-02	ci left: 1.112183e-01	ci right 1.136049e-01	k: 30350	n:270000
KS ci ratio: 5.102838e-01	ci left: 1.631218e-04	ci right 2.776892e-04	k: 58	n:270000
MTTP   270000 perm   89 sec   (3034 perm/sec)   p_kst 2.148148e-04   p_cons 1.124074e-01   p_joint 1.251852e-03

Joint ci ratio: 2.247049e-01	ci left: 9.637693e-04	ci right 1.211030e-03	k: 303	n:280000
Cons ci ratio: 2.082586e-02	ci left: 1.111505e-01	ci right 1.134932e-01	k: 31449	n:280000
KS ci ratio: 4.977845e-01	ci left: 1.666474e-04	ci right 2.798379e-04	k: 61	n:280000
MTTP   280000 perm   93 sec   (2999 perm/sec)   p_kst 2.178571e-04   p_cons 1.123179e-01   p_joint 1.082143e-03

Joint ci ratio: 2.210982e-01	ci left: 9.630935e-04	ci right 1.205675e-03	k: 313	n:290000
Cons ci ratio: 2.045736e-02	ci left: 1.112320e-01	ci right 1.135344e-01	k: 32590	n:290000
KS ci ratio: 4.938191e-01	ci left: 1.639178e-04	ci right 2.740648e-04	k: 62	n:290000
MTTP   290000 perm   98 sec   (2965 perm/sec)   p_kst 2.137931e-04   p_cons 1.123793e-01   p_joint 1.079310e-03

Joint ci ratio: 2.137334e-01	ci left: 1.000334e-03	ci right 1.242803e-03	k: 335	n:300000
Cons ci ratio: 2.011211e-02	ci left: 1.112652e-01	ci right 1.135290e-01	k: 33718	n:300000
KS ci ratio: 4.861627e-01	ci left: 1.642964e-04	ci right 2.724139e-04	k: 64	n:300000
MTTP   300000 perm   102 sec   (2932 perm/sec)   p_kst 2.133333e-04   p_cons 1.123933e-01   p_joint 1.116667e-03

Joint ci ratio: 2.200562e-01	ci left: 9.100984e-04	ci right 1.138105e-03	k: 316	n:310000
Cons ci ratio: 1.978090e-02	ci left: 1.113255e-01	ci right 1.135528e-01	k: 34855	n:310000
KS ci ratio: 4.788517e-01	ci left: 1.646630e-04	ci right 2.708573e-04	k: 66	n:310000
MTTP   310000 perm   107 sec   (2900 perm/sec)   p_kst 2.129032e-04   p_cons 1.124355e-01   p_joint 1.019355e-03

Joint ci ratio: 2.186830e-01	ci left: 8.934701e-04	ci right 1.115726e-03	k: 320	n:320000
Cons ci ratio: 1.947436e-02	ci left: 1.112920e-01	ci right 1.134838e-01	k: 35963	n:320000
KS ci ratio: 4.684776e-01	ci left: 1.677729e-04	ci right 2.728794e-04	k: 69	n:320000
MTTP   320000 perm   111 sec   (2870 perm/sec)   p_kst 2.156250e-04   p_cons 1.123844e-01   p_joint 1.000000e-03

Joint ci ratio: 2.170011e-01	ci left: 8.807195e-04	ci right 1.097894e-03	k: 325	n:330000
Cons ci ratio: 1.917030e-02	ci left: 1.113785e-01	ci right 1.135374e-01	k: 37110	n:330000
KS ci ratio: 4.651677e-01	ci left: 1.653625e-04	ci right 2.679949e-04	k: 70	n:330000
MTTP   330000 perm   116 sec   (2840 perm/sec)   p_kst 2.121212e-04   p_cons 1.124545e-01   p_joint 9.848485e-04

Joint ci ratio: 2.147091e-01	ci left: 8.742909e-04	ci right 1.087303e-03	k: 332	n:340000
Cons ci ratio: 1.888004e-02	ci left: 1.114602e-01	ci right 1.135876e-01	k: 38257	n:340000
KS ci ratio: 4.651691e-01	ci left: 1.604988e-04	ci right 2.601129e-04	k: 70	n:340000
MTTP   340000 perm   121 sec   (2811 perm/sec)   p_kst 2.058824e-04   p_cons 1.125206e-01   p_joint 9.764706e-04

Joint ci ratio: 2.103320e-01	ci left: 8.871830e-04	ci right 1.098362e-03	k: 346	n:350000
Cons ci ratio: 1.862362e-02	ci left: 1.113127e-01	ci right 1.134080e-01	k: 39325	n:350000
KS ci ratio: 4.525935e-01	ci left: 1.660204e-04	ci right 2.654220e-04	k: 74	n:350000
MTTP   350000 perm   126 sec   (2783 perm/sec)   p_kst 2.114286e-04   p_cons 1.123571e-01   p_joint 9.885714e-04

Joint ci ratio: 2.085379e-01	ci left: 8.783312e-04	ci right 1.085392e-03	k: 352	n:360000
Cons ci ratio: 1.837712e-02	ci left: 1.111763e-01	ci right 1.132411e-01	k: 40394	n:360000
KS ci ratio: 4.466771e-01	ci left: 1.663350e-04	ci right 2.642300e-04	k: 76	n:360000
MTTP   360000 perm   131 sec   (2753 perm/sec)   p_kst 2.111111e-04   p_cons 1.122056e-01   p_joint 9.777778e-04

Joint ci ratio: 2.103376e-01	ci left: 8.392250e-04	ci right 1.038994e-03	k: 346	n:370000
Cons ci ratio: 1.813275e-02	ci left: 1.111282e-01	ci right 1.131644e-01	k: 41493	n:370000
KS ci ratio: 4.409868e-01	ci left: 1.666407e-04	ci right 2.630946e-04	k: 78	n:370000
MTTP   370000 perm   136 sec   (2725 perm/sec)   p_kst 2.108108e-04   p_cons 1.121432e-01   p_joint 9.351351e-04

Joint ci ratio: 2.082483e-01	ci left: 8.345955e-04	ci right 1.031038e-03	k: 353	n:380000
Cons ci ratio: 1.790546e-02	ci left: 1.109989e-01	ci right 1.130070e-01	k: 42560	n:380000
KS ci ratio: 4.355086e-01	ci left: 1.669377e-04	ci right 2.620115e-04	k: 80	n:380000
MTTP   380000 perm   141 sec   (2697 perm/sec)   p_kst 2.105263e-04   p_cons 1.120000e-01   p_joint 9.289474e-04

Joint ci ratio: 2.079570e-01	ci left: 8.156252e-04	ci right 1.007300e-03	k: 354	n:390000
Cons ci ratio: 1.767442e-02	ci left: 1.110118e-01	ci right 1.129939e-01	k: 43680	n:390000
KS ci ratio: 4.302296e-01	ci left: 1.672265e-04	ci right 2.609770e-04	k: 82	n:390000
MTTP   390000 perm   146 sec   (2671 perm/sec)   p_kst 2.102564e-04   p_cons 1.120000e-01   p_joint 9.076923e-04

Joint ci ratio: 2.065089e-01	ci left: 8.070855e-04	ci right 9.952653e-04	k: 359	n:400000
Cons ci ratio: 1.745846e-02	ci left: 1.109520e-01	ci right 1.129086e-01	k: 44771	n:400000
KS ci ratio: 4.226585e-01	ci left: 1.697409e-04	ci right 2.627529e-04	k: 85	n:400000
MTTP   400000 perm   151 sec   (2644 perm/sec)   p_kst 2.125000e-04   p_cons 1.119275e-01   p_joint 8.975000e-04

Joint ci ratio: 2.183670e-01	ci left: 6.996402e-04	ci right 8.733938e-04	k: 321	n:410000
Cons ci ratio: 1.725468e-02	ci left: 1.108442e-01	ci right 1.127759e-01	k: 45841	n:410000
KS ci ratio: 4.226596e-01	ci left: 1.656008e-04	ci right 2.563445e-04	k: 85	n:410000
MTTP   410000 perm   157 sec   (2619 perm/sec)   p_kst 2.073171e-04   p_cons 1.118073e-01   p_joint 7.829268e-04

Joint ci ratio: 2.297146e-01	ci left: 6.133087e-04	ci right 7.746610e-04	k: 290	n:420000
Cons ci ratio: 1.705132e-02	ci left: 1.108176e-01	ci right 1.127258e-01	k: 46943	n:420000
KS ci ratio: 4.202241e-01	ci left: 1.637863e-04	ci right 2.528732e-04	k: 86	n:420000
MTTP   420000 perm   162 sec   (2594 perm/sec)   p_kst 2.047619e-04   p_cons 1.117690e-01   p_joint 6.904762e-04

Joint ci ratio: 2.266204e-01	ci left: 6.165872e-04	ci right 7.763117e-04	k: 298	n:430000
Cons ci ratio: 1.684670e-02	ci left: 1.108897e-01	ci right 1.127760e-01	k: 48087	n:430000
KS ci ratio: 4.178302e-01	ci left: 1.620576e-04	ci right 2.495620e-04	k: 87	n:430000
MTTP   430000 perm   167 sec   (2569 perm/sec)   p_kst 2.023256e-04   p_cons 1.118302e-01   p_joint 6.930233e-04

Joint ci ratio: 2.273844e-01	ci left: 5.982862e-04	ci right 7.538657e-04	k: 296	n:440000
Cons ci ratio: 1.666604e-02	ci left: 1.107594e-01	ci right 1.126230e-01	k: 49143	n:440000
KS ci ratio: 4.086451e-01	ci left: 1.665203e-04	ci right 2.539209e-04	k: 91	n:440000
MTTP   440000 perm   173 sec   (2544 perm/sec)   p_kst 2.068182e-04   p_cons 1.116886e-01   p_joint 6.727273e-04

Joint ci ratio: 2.251220e-01	ci left: 5.975686e-04	ci right 7.512009e-04	k: 302	n:450000
Cons ci ratio: 1.648018e-02	ci left: 1.107656e-01	ci right 1.126083e-01	k: 50258	n:450000
KS ci ratio: 4.042744e-01	ci left: 1.668098e-04	ci right 2.531747e-04	k: 93	n:450000
MTTP   450000 perm   179 sec   (2520 perm/sec)   p_kst 2.066667e-04   p_cons 1.116844e-01   p_joint 6.711111e-04

Joint ci ratio: 2.214959e-01	ci left: 6.051015e-04	ci right 7.578231e-04	k: 312	n:460000
Cons ci ratio: 1.629647e-02	ci left: 1.108192e-01	ci right 1.126422e-01	k: 51395	n:460000
KS ci ratio: 4.021415e-01	ci left: 1.651369e-04	ci right 2.500643e-04	k: 94	n:460000
MTTP   460000 perm   184 sec   (2497 perm/sec)   p_kst 2.043478e-04   p_cons 1.117283e-01   p_joint 6.782609e-04

Joint ci ratio: 2.187181e-01	ci left: 6.083100e-04	ci right 7.596573e-04	k: 320	n:470000
Cons ci ratio: 1.611807e-02	ci left: 1.108792e-01	ci right 1.126830e-01	k: 52536	n:470000
KS ci ratio: 3.979742e-01	ci left: 1.654505e-04	ci right 2.494251e-04	k: 96	n:470000
MTTP   470000 perm   190 sec   (2474 perm/sec)   p_kst 2.042553e-04   p_cons 1.117787e-01   p_joint 6.808511e-04

Joint ci ratio: 2.157145e-01	ci left: 6.133671e-04	ci right 7.635993e-04	k: 329	n:480000
Cons ci ratio: 1.594608e-02	ci left: 1.109285e-01	ci right 1.127137e-01	k: 53673	n:480000
KS ci ratio: 3.880962e-01	ci left: 1.713910e-04	ci right 2.556695e-04	k: 101	n:480000
MTTP   480000 perm   196 sec   (2452 perm/sec)   p_kst 2.104167e-04   p_cons 1.118187e-01   p_joint 6.854167e-04

Joint ci ratio: 1.517935e-01	ci left: 1.256003e-03	ci right 1.464250e-03	k: 665	n:490000
Cons ci ratio: 1.577139e-02	ci left: 1.110776e-01	ci right 1.128454e-01	k: 54860	n:490000
KS ci ratio: 3.825114e-01	ci left: 1.734227e-04	ci right 2.571644e-04	k: 104	n:490000
MTTP   490000 perm   202 sec   (2430 perm/sec)   p_kst 2.122449e-04   p_cons 1.119592e-01   p_joint 1.357143e-03

Joint ci ratio: 1.503335e-01	ci left: 1.255900e-03	ci right 1.461947e-03	k: 678	n:500000
Cons ci ratio: 1.561407e-02	ci left: 1.110713e-01	ci right 1.128212e-01	k: 55972	n:500000
KS ci ratio: 3.754266e-01	ci left: 1.771922e-04	ci right 2.607796e-04	k: 108	n:500000
MTTP   500000 perm   208 sec   (2408 perm/sec)   p_kst 2.160000e-04   p_cons 1.119440e-01   p_joint 1.356000e-03

Joint ci ratio: 1.480602e-01	ci left: 1.270915e-03	ci right 1.475993e-03	k: 699	n:510000
Cons ci ratio: 1.546473e-02	ci left: 1.110224e-01	ci right 1.127546e-01	k: 57062	n:510000
KS ci ratio: 3.687214e-01	ci left: 1.808277e-04	ci right 2.642394e-04	k: 112	n:510000
MTTP   510000 perm   214 sec   (2386 perm/sec)   p_kst 2.196078e-04   p_cons 1.118863e-01   p_joint 1.370588e-03

Joint ci ratio: 1.470144e-01	ci left: 1.264995e-03	ci right 1.467549e-03	k: 709	n:520000
Cons ci ratio: 1.531292e-02	ci left: 1.110616e-01	ci right 1.127773e-01	k: 58197	n:520000
KS ci ratio: 3.623630e-01	ci left: 1.843362e-04	ci right 2.675536e-04	k: 116	n:520000
MTTP   520000 perm   220 sec   (2365 perm/sec)   p_kst 2.230769e-04   p_cons 1.119173e-01   p_joint 1.363462e-03

Joint ci ratio: 1.460920e-01	ci left: 1.257485e-03	ci right 1.457464e-03	k: 718	n:530000
Cons ci ratio: 1.516492e-02	ci left: 1.111070e-01	ci right 1.128067e-01	k: 59336	n:530000
KS ci ratio: 3.608247e-01	ci left: 1.825735e-04	ci right 2.645629e-04	k: 117	n:530000
MTTP   530000 perm   226 sec   (2345 perm/sec)   p_kst 2.207547e-04   p_cons 1.119547e-01   p_joint 1.354717e-03

Joint ci ratio: 2.218620e-01	ci left: 5.137050e-04	ci right 6.436024e-04	k: 311	n:540000
Cons ci ratio: 1.502407e-02	ci left: 1.111120e-01	ci right 1.127958e-01	k: 60454	n:540000
KS ci ratio: 3.464409e-01	ci left: 1.960669e-04	ci right 2.798195e-04	k: 127	n:540000
MTTP   540000 perm   232 sec   (2324 perm/sec)   p_kst 2.351852e-04   p_cons 1.119519e-01   p_joint 5.759259e-04

Joint ci ratio: 2.197589e-01	ci left: 5.146707e-04	ci right 6.434120e-04	k: 317	n:550000
Cons ci ratio: 1.488530e-02	ci left: 1.111405e-01	ci right 1.128090e-01	k: 61585	n:550000
KS ci ratio: 3.411510e-01	ci left: 1.991470e-04	ci right 2.826300e-04	k: 131	n:550000
MTTP   550000 perm   239 sec   (2305 perm/sec)   p_kst 2.381818e-04   p_cons 1.119727e-01   p_joint 5.763636e-04

Joint ci ratio: 2.173792e-01	ci left: 5.172960e-04	ci right 6.451056e-04	k: 324	n:560000
Cons ci ratio: 1.475269e-02	ci left: 1.111360e-01	ci right 1.127895e-01	k: 62698	n:560000
KS ci ratio: 3.398664e-01	ci left: 1.972238e-04	ci right 2.795209e-04	k: 132	n:560000
MTTP   560000 perm   245 sec   (2285 perm/sec)   p_kst 2.357143e-04   p_cons 1.119607e-01   p_joint 5.785714e-04

Joint ci ratio: 2.167141e-01	ci left: 5.115385e-04	ci right 6.374874e-04	k: 326	n:570000
Cons ci ratio: 1.462859e-02	ci left: 1.110635e-01	ci right 1.127019e-01	k: 63772	n:570000
KS ci ratio: 3.373396e-01	ci left: 1.969742e-04	ci right 2.784231e-04	k: 134	n:570000
MTTP   570000 perm   252 sec   (2265 perm/sec)   p_kst 2.350877e-04   p_cons 1.118807e-01   p_joint 5.719298e-04

Joint ci ratio: 2.289508e-01	ci left: 4.473658e-04	ci right 5.646139e-04	k: 292	n:580000
Cons ci ratio: 1.450405e-02	ci left: 1.110417e-01	ci right 1.126657e-01	k: 64874	n:580000
KS ci ratio: 3.398678e-01	ci left: 1.904229e-04	ci right 2.698825e-04	k: 132	n:580000
MTTP   580000 perm   258 sec   (2247 perm/sec)   p_kst 2.275862e-04   p_cons 1.118517e-01   p_joint 5.034483e-04

Joint ci ratio: 2.285619e-01	ci left: 4.413809e-04	ci right 5.568362e-04	k: 293	n:590000
Cons ci ratio: 1.438620e-02	ci left: 1.109716e-01	ci right 1.125813e-01	k: 65947	n:590000
KS ci ratio: 3.348690e-01	ci left: 1.934008e-04	ci right 2.726600e-04	k: 136	n:590000
MTTP   590000 perm   265 sec   (2228 perm/sec)   p_kst 2.305085e-04   p_cons 1.117746e-01   p_joint 4.966102e-04

Joint ci ratio: 2.262645e-01	ci left: 4.434550e-04	ci right 5.581243e-04	k: 299	n:600000
Cons ci ratio: 1.426698e-02	ci left: 1.109622e-01	ci right 1.125583e-01	k: 67055	n:600000
KS ci ratio: 3.324513e-01	ci left: 1.932316e-04	ci right 2.717272e-04	k: 138	n:600000
MTTP   600000 perm   271 sec   (2210 perm/sec)   p_kst 2.300000e-04   p_cons 1.117583e-01   p_joint 4.983333e-04

Joint ci ratio: 2.293455e-01	ci left: 4.238183e-04	ci right 5.351135e-04	k: 291	n:610000
Cons ci ratio: 1.414554e-02	ci left: 1.110249e-01	ci right 1.126083e-01	k: 68207	n:610000
KS ci ratio: 3.300851e-01	ci left: 1.930699e-04	ci right 2.708231e-04	k: 140	n:610000
MTTP   610000 perm   278 sec   (2193 perm/sec)   p_kst 2.295082e-04   p_cons 1.118148e-01   p_joint 4.770492e-04

Joint ci ratio: 2.281767e-01	ci left: 4.215439e-04	ci right 5.315983e-04	k: 294	n:620000
Cons ci ratio: 1.402658e-02	ci left: 1.110938e-01	ci right 1.126647e-01	k: 69364	n:620000
KS ci ratio: 3.289212e-01	ci left: 1.914353e-04	ci right 2.682009e-04	k: 141	n:620000
MTTP   620000 perm   285 sec   (2174 perm/sec)   p_kst 2.274194e-04   p_cons 1.118774e-01   p_joint 4.741935e-04

Joint ci ratio: 2.262672e-01	ci left: 4.223376e-04	ci right 5.315477e-04	k: 299	n:630000
Cons ci ratio: 1.391067e-02	ci left: 1.111590e-01	ci right 1.127176e-01	k: 70520	n:630000
KS ci ratio: 3.277694e-01	ci left: 1.898531e-04	ci right 2.656614e-04	k: 142	n:630000
MTTP   630000 perm   292 sec   (2158 perm/sec)   p_kst 2.253968e-04   p_cons 1.119365e-01   p_joint 4.746032e-04

Joint ci ratio: 2.274085e-01	ci left: 4.113171e-04	ci right 5.182892e-04	k: 296	n:640000
Cons ci ratio: 1.379738e-02	ci left: 1.112252e-01	ci right 1.127720e-01	k: 71678	n:640000
KS ci ratio: 3.255011e-01	ci left: 1.897554e-04	ci right 2.648908e-04	k: 144	n:640000
MTTP   640000 perm   299 sec   (2142 perm/sec)   p_kst 2.250000e-04   p_cons 1.119969e-01   p_joint 4.625000e-04

Joint ci ratio: 2.258925e-01	ci left: 4.107936e-04	ci right 5.168182e-04	k: 300	n:650000
Cons ci ratio: 1.368438e-02	ci left: 1.113248e-01	ci right 1.128602e-01	k: 72859	n:650000
KS ci ratio: 3.232793e-01	ci left: 1.896625e-04	ci right 2.641422e-04	k: 146	n:650000
MTTP   650000 perm   306 sec   (2126 perm/sec)   p_kst 2.246154e-04   p_cons 1.120908e-01   p_joint 4.615385e-04

Joint ci ratio: 2.244065e-01	ci left: 4.102883e-04	ci right 5.153895e-04	k: 304	n:660000
Cons ci ratio: 1.357442e-02	ci left: 1.114169e-01	ci right 1.129411e-01	k: 74037	n:660000
KS ci ratio: 3.221856e-01	ci left: 1.881812e-04	ci right 2.617776e-04	k: 147	n:660000
MTTP   660000 perm   313 sec   (2109 perm/sec)   p_kst 2.227273e-04   p_cons 1.121773e-01   p_joint 4.606061e-04

Joint ci ratio: 2.233112e-01	ci left: 4.083911e-04	ci right 5.124255e-04	k: 307	n:670000
Cons ci ratio: 1.346757e-02	ci left: 1.114988e-01	ci right 1.130120e-01	k: 75210	n:670000
KS ci ratio: 3.211030e-01	ci left: 1.867446e-04	ci right 2.594831e-04	k: 148	n:670000
MTTP   670000 perm   320 sec   (2093 perm/sec)   p_kst 2.208955e-04   p_cons 1.122537e-01   p_joint 4.582090e-04

Joint ci ratio: 2.367680e-01	ci left: 3.552629e-04	ci right 4.520175e-04	k: 273	n:680000
Cons ci ratio: 1.337060e-02	ci left: 1.114684e-01	ci right 1.129702e-01	k: 76308	n:680000
KS ci ratio: 3.179182e-01	ci left: 1.880563e-04	ci right 2.604315e-04	k: 151	n:680000
MTTP   680000 perm   327 sec   (2077 perm/sec)   p_kst 2.220588e-04   p_cons 1.122176e-01   p_joint 4.014706e-04

Joint ci ratio: 1.797999e-01	ci left: 6.265163e-04	ci right 7.516504e-04	k: 474	n:690000
Cons ci ratio: 1.327550e-02	ci left: 1.114418e-01	ci right 1.129325e-01	k: 77408	n:690000
KS ci ratio: 3.158471e-01	ci left: 1.879989e-04	ci right 2.597855e-04	k: 153	n:690000
MTTP   690000 perm   335 sec   (2062 perm/sec)   p_kst 2.217391e-04   p_cons 1.121855e-01   p_joint 6.869565e-04

Joint ci ratio: 1.788612e-01	ci left: 6.243882e-04	ci right 7.483758e-04	k: 479	n:700000
Cons ci ratio: 1.318335e-02	ci left: 1.114017e-01	ci right 1.128815e-01	k: 78498	n:700000
KS ci ratio: 3.138160e-01	ci left: 1.879447e-04	ci right 2.591564e-04	k: 155	n:700000
MTTP   700000 perm   342 sec   (2047 perm/sec)   p_kst 2.214286e-04   p_cons 1.121400e-01   p_joint 6.842857e-04

Joint ci ratio: 1.773889e-01	ci left: 6.263593e-04	ci right 7.496046e-04	k: 487	n:710000
Cons ci ratio: 1.309559e-02	ci left: 1.113249e-01	ci right 1.127938e-01	k: 79561	n:710000
KS ci ratio: 3.108412e-01	ci left: 1.891918e-04	ci right 2.600618e-04	k: 158	n:710000
MTTP   710000 perm   349 sec   (2033 perm/sec)   p_kst 2.225352e-04   p_cons 1.120577e-01   p_joint 6.859155e-04

Joint ci ratio: 1.763085e-01	ci left: 6.256243e-04	ci right 7.478953e-04	k: 493	n:720000
Cons ci ratio: 1.300239e-02	ci left: 1.113597e-01	ci right 1.128185e-01	k: 80703	n:720000
KS ci ratio: 3.098686e-01	ci left: 1.878448e-04	ci right 2.579465e-04	k: 159	n:720000
MTTP   720000 perm   357 sec   (2019 perm/sec)   p_kst 2.208333e-04   p_cons 1.120875e-01   p_joint 6.847222e-04

Joint ci ratio: 1.757760e-01	ci left: 6.209825e-04	ci right 7.419409e-04	k: 496	n:730000
Cons ci ratio: 1.291115e-02	ci left: 1.113935e-01	ci right 1.128424e-01	k: 81845	n:730000
KS ci ratio: 3.089050e-01	ci left: 1.865351e-04	ci right 2.558889e-04	k: 160	n:730000
MTTP   730000 perm   364 sec   (2005 perm/sec)   p_kst 2.191781e-04   p_cons 1.121164e-01   p_joint 6.794521e-04

Joint ci ratio: 1.740335e-01	ci left: 6.255129e-04	ci right 7.460190e-04	k: 506	n:740000
Cons ci ratio: 1.282371e-02	ci left: 1.113969e-01	ci right 1.128359e-01	k: 82965	n:740000
KS ci ratio: 3.042167e-01	ci left: 1.902515e-04	ci right 2.597057e-04	k: 165	n:740000
MTTP   740000 perm   372 sec   (1991 perm/sec)   p_kst 2.229730e-04   p_cons 1.121149e-01   p_joint 6.837838e-04

Joint ci ratio: 1.728444e-01	ci left: 6.261009e-04	ci right 7.458101e-04	k: 513	n:750000
Cons ci ratio: 1.273565e-02	ci left: 1.114374e-01	ci right 1.128670e-01	k: 84113	n:750000
KS ci ratio: 3.015043e-01	ci left: 1.914109e-04	ci right 2.605460e-04	k: 168	n:750000
MTTP   750000 perm   379 sec   (1978 perm/sec)   p_kst 2.240000e-04   p_cons 1.121507e-01   p_joint 6.840000e-04

Joint ci ratio: 1.723426e-01	ci left: 6.216395e-04	ci right 7.401147e-04	k: 516	n:760000
Cons ci ratio: 1.264812e-02	ci left: 1.114965e-01	ci right 1.129170e-01	k: 85276	n:760000
KS ci ratio: 3.006165e-01	ci left: 1.901088e-04	ci right 2.585327e-04	k: 169	n:760000
MTTP   760000 perm   387 sec   (1964 perm/sec)   p_kst 2.223684e-04   p_cons 1.122053e-01   p_joint 6.789474e-04

Joint ci ratio: 1.705375e-01	ci left: 6.272391e-04	ci right 7.454007e-04	k: 527	n:770000
Cons ci ratio: 1.256417e-02	ci left: 1.115257e-01	ci right 1.129370e-01	k: 86417	n:770000
KS ci ratio: 2.997364e-01	ci left: 1.888407e-04	ci right 2.565713e-04	k: 170	n:770000
MTTP   770000 perm   395 sec   (1951 perm/sec)   p_kst 2.207792e-04   p_cons 1.122299e-01   p_joint 6.844156e-04

Joint ci ratio: 1.697359e-01	ci left: 6.253349e-04	ci right 7.425274e-04	k: 532	n:780000
Cons ci ratio: 1.248090e-02	ci left: 1.115694e-01	ci right 1.129719e-01	k: 87570	n:780000
KS ci ratio: 2.997368e-01	ci left: 1.864196e-04	ci right 2.532820e-04	k: 170	n:780000
MTTP   780000 perm   402 sec   (1938 perm/sec)   p_kst 2.179487e-04   p_cons 1.122692e-01   p_joint 6.820513e-04

Joint ci ratio: 1.687886e-01	ci left: 6.246924e-04	ci right 7.410447e-04	k: 538	n:790000
Cons ci ratio: 1.240250e-02	ci left: 1.115604e-01	ci right 1.129539e-01	k: 88682	n:790000
KS ci ratio: 2.979993e-01	ci left: 1.864017e-04	ci right 2.527968e-04	k: 172	n:790000
MTTP   790000 perm   410 sec   (1926 perm/sec)   p_kst 2.177215e-04   p_cons 1.122557e-01   p_joint 6.810127e-04

Joint ci ratio: 1.673966e-01	ci left: 6.276606e-04	ci right 7.435044e-04	k: 547	n:800000
Cons ci ratio: 1.232703e-02	ci left: 1.115279e-01	ci right 1.129124e-01	k: 89775	n:800000
KS ci ratio: 2.946125e-01	ci left: 1.887002e-04	ci right 2.550074e-04	k: 176	n:800000
MTTP   800000 perm   419 sec   (1911 perm/sec)   p_kst 2.200000e-04   p_cons 1.122188e-01   p_joint 6.837500e-04

Joint ci ratio: 1.663376e-01	ci left: 6.281928e-04	ci right 7.433278e-04	k: 554	n:810000
Cons ci ratio: 1.224973e-02	ci left: 1.115479e-01	ci right 1.129240e-01	k: 90910	n:810000
KS ci ratio: 2.921469e-01	ci left: 1.898017e-04	ci right 2.558346e-04	k: 179	n:810000
MTTP   810000 perm   427 sec   (1899 perm/sec)   p_kst 2.209877e-04   p_cons 1.122346e-01   p_joint 6.839506e-04

Joint ci ratio: 1.651515e-01	ci left: 6.298833e-04	ci right 7.444232e-04	k: 562	n:820000
Cons ci ratio: 1.217111e-02	ci left: 1.116125e-01	ci right 1.129805e-01	k: 92082	n:820000
KS ci ratio: 2.921473e-01	ci left: 1.874870e-04	ci right 2.527147e-04	k: 179	n:820000
MTTP   820000 perm   435 sec   (1886 perm/sec)   p_kst 2.182927e-04   p_cons 1.122951e-01   p_joint 6.853659e-04

Joint ci ratio: 1.639904e-01	ci left: 6.315360e-04	ci right 7.454894e-04	k: 570	n:830000
Cons ci ratio: 1.209479e-02	ci left: 1.116624e-01	ci right 1.130223e-01	k: 93243	n:830000
KS ci ratio: 2.913394e-01	ci left: 1.863448e-04	ci right 2.509627e-04	k: 180	n:830000
MTTP   830000 perm   443 sec   (1872 perm/sec)   p_kst 2.168675e-04   p_cons 1.123410e-01   p_joint 6.867470e-04

Joint ci ratio: 1.631356e-01	ci left: 6.308682e-04	ci right 7.440495e-04	k: 576	n:840000
Cons ci ratio: 1.202203e-02	ci left: 1.116754e-01	ci right 1.130273e-01	k: 94374	n:840000
KS ci ratio: 2.897430e-01	ci left: 1.863338e-04	ci right 2.505291e-04	k: 182	n:840000
MTTP   840000 perm   452 sec   (1859 perm/sec)   p_kst 2.166667e-04   p_cons 1.123500e-01   p_joint 6.857143e-04

Joint ci ratio: 1.622940e-01	ci left: 6.302176e-04	ci right 7.426420e-04	k: 582	n:850000
Cons ci ratio: 1.195255e-02	ci left: 1.116553e-01	ci right 1.129991e-01	k: 95477	n:850000
KS ci ratio: 2.873967e-01	ci left: 1.874157e-04	ci right 2.513658e-04	k: 185	n:850000
MTTP   850000 perm   460 sec   (1846 perm/sec)   p_kst 2.176471e-04   p_cons 1.123259e-01   p_joint 6.847059e-04

Joint ci ratio: 1.638488e-01	ci left: 6.106202e-04	ci right 7.206951e-04	k: 571	n:860000
Cons ci ratio: 1.188101e-02	ci left: 1.116903e-01	ci right 1.130263e-01	k: 96627	n:860000
KS ci ratio: 2.858640e-01	ci left: 1.873949e-04	ci right 2.509353e-04	k: 187	n:860000
MTTP   860000 perm   469 sec   (1833 perm/sec)   p_kst 2.174419e-04   p_cons 1.123570e-01   p_joint 6.639535e-04

Joint ci ratio: 1.644258e-01	ci left: 5.991925e-04	ci right 7.076252e-04	k: 567	n:870000
Cons ci ratio: 1.181434e-02	ci left: 1.116636e-01	ci right 1.129918e-01	k: 97724	n:870000
KS ci ratio: 2.843555e-01	ci left: 1.873754e-04	ci right 2.505137e-04	k: 189	n:870000
MTTP   870000 perm   478 sec   (1821 perm/sec)   p_kst 2.172414e-04   p_cons 1.123264e-01   p_joint 6.517241e-04

Joint ci ratio: 1.641375e-01	ci left: 5.945626e-04	ci right 7.019503e-04	k: 569	n:880000
Cons ci ratio: 1.174557e-02	ci left: 1.116920e-01	ci right 1.130128e-01	k: 98869	n:880000
KS ci ratio: 2.843558e-01	ci left: 1.852461e-04	ci right 2.476670e-04	k: 189	n:880000
MTTP   880000 perm   487 sec   (1808 perm/sec)   p_kst 2.147727e-04   p_cons 1.123511e-01   p_joint 6.465909e-04

Joint ci ratio: 1.635648e-01	ci left: 5.921922e-04	ci right 6.987418e-04	k: 573	n:890000
Cons ci ratio: 1.167640e-02	ci left: 1.117467e-01	ci right 1.130603e-01	k: 100038	n:890000
KS ci ratio: 2.828710e-01	ci left: 1.852520e-04	ci right 2.472909e-04	k: 191	n:890000
MTTP   890000 perm   496 sec   (1796 perm/sec)   p_kst 2.146067e-04   p_cons 1.124022e-01   p_joint 6.438202e-04

Joint ci ratio: 1.667950e-01	ci left: 5.621775e-04	ci right 6.655250e-04	k: 551	n:900000
Cons ci ratio: 1.161051e-02	ci left: 1.117648e-01	ci right 1.130711e-01	k: 101175	n:900000
KS ci ratio: 2.828713e-01	ci left: 1.831937e-04	ci right 2.445432e-04	k: 191	n:900000
MTTP   900000 perm   505 sec   (1783 perm/sec)   p_kst 2.122222e-04   p_cons 1.124167e-01   p_joint 6.122222e-04

Joint ci ratio: 1.658959e-01	ci left: 5.623186e-04	ci right 6.650791e-04	k: 557	n:910000
Cons ci ratio: 1.154783e-02	ci left: 1.117462e-01	ci right 1.130452e-01	k: 102279	n:910000
KS ci ratio: 2.792581e-01	ci left: 1.862879e-04	ci right 2.477366e-04	k: 196	n:910000
MTTP   910000 perm   514 sec   (1771 perm/sec)   p_kst 2.153846e-04   p_cons 1.123945e-01   p_joint 6.120879e-04

Joint ci ratio: 1.653046e-01	ci left: 5.603741e-04	ci right 6.623779e-04	k: 561	n:920000
Cons ci ratio: 1.148208e-02	ci left: 1.117986e-01	ci right 1.130908e-01	k: 103448	n:920000
KS ci ratio: 2.778512e-01	ci left: 1.862851e-04	ci right 2.473692e-04	k: 198	n:920000
MTTP   920000 perm   523 sec   (1759 perm/sec)   p_kst 2.152174e-04   p_cons 1.124435e-01   p_joint 6.097826e-04

Joint ci ratio: 1.603833e-01	ci left: 5.904503e-04	ci right 6.944211e-04	k: 596	n:930000
Cons ci ratio: 1.188872e-02	ci left: 1.040431e-01	ci right 1.052884e-01	k: 97338	n:930000
KS ci ratio: 2.757801e-01	ci left: 1.872839e-04	ci right 2.481584e-04	k: 201	n:930000
MTTP   930000 perm   532 sec   (1747 perm/sec)   p_kst 2.161290e-04   p_cons 1.046645e-01   p_joint 6.408602e-04

Joint ci ratio: 1.595834e-01	ci left: 5.902964e-04	ci right 6.936720e-04	k: 602	n:940000
Cons ci ratio: 1.182469e-02	ci left: 1.040563e-01	ci right 1.052951e-01	k: 98394	n:940000
KS ci ratio: 2.751002e-01	ci left: 1.862819e-04	ci right 2.466556e-04	k: 202	n:940000
MTTP   940000 perm   542 sec   (1736 perm/sec)   p_kst 2.148936e-04   p_cons 1.046745e-01   p_joint 6.404255e-04

Joint ci ratio: 1.589260e-01	ci left: 5.891361e-04	ci right 6.918429e-04	k: 607	n:950000
Cons ci ratio: 1.176293e-02	ci left: 1.040493e-01	ci right 1.052815e-01	k: 99431	n:950000
KS ci ratio: 2.751005e-01	ci left: 1.843210e-04	ci right 2.440593e-04	k: 202	n:950000
MTTP   950000 perm   551 sec   (1724 perm/sec)   p_kst 2.126316e-04   p_cons 1.046642e-01   p_joint 6.389474e-04

Joint ci ratio: 1.618842e-01	ci left: 5.610018e-04	ci right 6.608014e-04	k: 585	n:960000
Cons ci ratio: 1.170057e-02	ci left: 1.040674e-01	ci right 1.052933e-01	k: 100492	n:960000
KS ci ratio: 2.724293e-01	ci left: 1.862817e-04	ci right 2.459689e-04	k: 206	n:960000
MTTP   960000 perm   560 sec   (1713 perm/sec)   p_kst 2.145833e-04   p_cons 1.046792e-01   p_joint 6.093750e-04

Joint ci ratio: 1.609258e-01	ci left: 5.621433e-04	ci right 6.614967e-04	k: 592	n:970000
Cons ci ratio: 1.163836e-02	ci left: 1.040986e-01	ci right 1.053182e-01	k: 101566	n:970000
KS ci ratio: 2.698344e-01	ci left: 1.882047e-04	ci right 2.478364e-04	k: 210	n:970000
MTTP   970000 perm   570 sec   (1702 perm/sec)   p_kst 2.164948e-04   p_cons 1.047072e-01   p_joint 6.103093e-04

Joint ci ratio: 1.605205e-01	ci left: 5.593452e-04	ci right 6.579311e-04	k: 595	n:980000
Cons ci ratio: 1.158167e-02	ci left: 1.040558e-01	ci right 1.052690e-01	k: 102568	n:980000
KS ci ratio: 2.685646e-01	ci left: 1.881874e-04	ci right 2.474857e-04	k: 212	n:980000
MTTP   980000 perm   580 sec   (1691 perm/sec)   p_kst 2.163265e-04   p_cons 1.046612e-01   p_joint 6.071429e-04

Joint ci ratio: 1.635701e-01	ci left: 5.323734e-04	ci right 6.281635e-04	k: 573	n:990000
Cons ci ratio: 1.152108e-02	ci left: 1.040905e-01	ci right 1.052977e-01	k: 103646	n:990000
KS ci ratio: 2.679366e-01	ci left: 1.872287e-04	ci right 2.460638e-04	k: 213	n:990000
MTTP   990000 perm   589 sec   (1680 perm/sec)   p_kst 2.151515e-04   p_cons 1.046929e-01   p_joint 5.787879e-04

Joint ci ratio: 1.628624e-01	ci left: 5.318455e-04	ci right 6.270860e-04	k: 578	n:1000000
Cons ci ratio: 1.146363e-02	ci left: 1.040886e-01	ci right 1.052897e-01	k: 104688	n:1000000
KS ci ratio: 2.666933e-01	ci left: 1.872223e-04	ci right 2.457368e-04	k: 215	n:1000000
MTTP   1000000 perm   599 sec   (1669 perm/sec)   p_kst 2.150000e-04   p_cons 1.046880e-01   p_joint 5.780000e-04

Joint ci ratio: 1.642886e-01	ci left: 5.170836e-04	ci right 6.105717e-04	k: 568	n:1010000
Cons ci ratio: 1.140824e-02	ci left: 1.040670e-01	ci right 1.052620e-01	k: 105710	n:1010000
KS ci ratio: 2.648602e-01	ci left: 1.881411e-04	ci right 2.464715e-04	k: 218	n:1010000
MTTP   1010000 perm   609 sec   (1659 perm/sec)   p_kst 2.158416e-04   p_cons 1.046634e-01   p_joint 5.623762e-04

Joint ci ratio: 1.640009e-01	ci left: 5.138944e-04	ci right 6.066270e-04	k: 570	n:1020000
Cons ci ratio: 1.135163e-02	ci left: 1.040791e-01	ci right 1.052683e-01	k: 106766	n:1020000
KS ci ratio: 2.636590e-01	ci left: 1.881275e-04	ci right 2.461455e-04	k: 220	n:1020000
MTTP   1020000 perm   619 sec   (1648 perm/sec)   p_kst 2.156863e-04   p_cons 1.046725e-01   p_joint 5.588235e-04

Joint ci ratio: 1.630047e-01	ci left: 5.154232e-04	ci right 6.078114e-04	k: 577	n:1030000
Cons ci ratio: 1.129672e-02	ci left: 1.040764e-01	ci right 1.052598e-01	k: 107807	n:1030000
KS ci ratio: 2.630647e-01	ci left: 1.872078e-04	ci right 2.447906e-04	k: 221	n:1030000
MTTP   1030000 perm   629 sec   (1637 perm/sec)   p_kst 2.145631e-04   p_cons 1.046670e-01   p_joint 5.601942e-04

Joint ci ratio: 1.618880e-01	ci left: 5.178468e-04	ci right 6.099717e-04	k: 585	n:1040000
Cons ci ratio: 1.124111e-02	ci left: 1.040988e-01	ci right 1.052765e-01	k: 108874	n:1040000
KS ci ratio: 2.630650e-01	ci left: 1.854077e-04	ci right 2.424369e-04	k: 221	n:1040000
MTTP   1040000 perm   639 sec   (1627 perm/sec)   p_kst 2.125000e-04   p_cons 1.046865e-01   p_joint 5.625000e-04

Joint ci ratio: 1.635728e-01	ci left: 5.019515e-04	ci right 5.922693e-04	k: 573	n:1050000
Cons ci ratio: 1.118716e-02	ci left: 1.041065e-01	ci right 1.052786e-01	k: 109926	n:1050000
KS ci ratio: 2.618880e-01	ci left: 1.854213e-04	ci right 2.421578e-04	k: 223	n:1050000
MTTP   1050000 perm   650 sec   (1617 perm/sec)   p_kst 2.123810e-04   p_cons 1.046914e-01   p_joint 5.457143e-04

Joint ci ratio: 1.623051e-01	ci left: 5.053605e-04	ci right 5.955183e-04	k: 582	n:1060000
Cons ci ratio: 1.113449e-02	ci left: 1.041055e-01	ci right 1.052721e-01	k: 110969	n:1060000
KS ci ratio: 2.590128e-01	ci left: 1.880812e-04	ci right 2.448974e-04	k: 228	n:1060000
MTTP   1060000 perm   660 sec   (1607 perm/sec)   p_kst 2.150943e-04   p_cons 1.046877e-01   p_joint 5.490566e-04

Joint ci ratio: 1.634313e-01	ci left: 4.934653e-04	ci right 5.821719e-04	k: 574	n:1070000
Cons ci ratio: 1.108139e-02	ci left: 1.041242e-01	ci right 1.052854e-01	k: 112033	n:1070000
KS ci ratio: 2.567797e-01	ci left: 1.898201e-04	ci right 2.465881e-04	k: 232	n:1070000
MTTP   1070000 perm   671 sec   (1595 perm/sec)   p_kst 2.168224e-04   p_cons 1.047037e-01   p_joint 5.364486e-04

Joint ci ratio: 1.630068e-01	ci left: 4.915605e-04	ci right 5.796726e-04	k: 577	n:1080000
Cons ci ratio: 1.103188e-02	ci left: 1.040945e-01	ci right 1.052502e-01	k: 113045	n:1080000
KS ci ratio: 2.567799e-01	ci left: 1.880625e-04	ci right 2.443049e-04	k: 232	n:1080000
MTTP   1080000 perm   682 sec   (1584 perm/sec)   p_kst 2.148148e-04   p_cons 1.046713e-01   p_joint 5.342593e-04

Joint ci ratio: 1.623063e-01	ci left: 4.914512e-04	ci right 5.791282e-04	k: 582	n:1090000
Cons ci ratio: 1.098184e-02	ci left: 1.040856e-01	ci right 1.052358e-01	k: 114079	n:1090000
KS ci ratio: 2.556849e-01	ci left: 1.880542e-04	ci right 2.440160e-04	k: 234	n:1090000
MTTP   1090000 perm   693 sec   (1573 perm/sec)   p_kst 2.146789e-04   p_cons 1.046596e-01   p_joint 5.339450e-04

Joint ci ratio: 1.614775e-01	ci left: 4.922170e-04	ci right 5.795387e-04	k: 588	n:1100000
Cons ci ratio: 1.093057e-02	ci left: 1.041094e-01	ci right 1.052545e-01	k: 115149	n:1100000
KS ci ratio: 2.551428e-01	ci left: 1.871955e-04	ci right 2.427648e-04	k: 235	n:1100000
MTTP   1100000 perm   704 sec   (1562 perm/sec)   p_kst 2.136364e-04   p_cons 1.046809e-01   p_joint 5.345455e-04

Joint ci ratio: 1.609320e-01	ci left: 4.912409e-04	ci right 5.780665e-04	k: 592	n:1110000
Cons ci ratio: 1.088168e-02	ci left: 1.041041e-01	ci right 1.052440e-01	k: 116187	n:1110000
KS ci ratio: 2.551430e-01	ci left: 1.855090e-04	ci right 2.405778e-04	k: 235	n:1110000
MTTP   1110000 perm   715 sec   (1553 perm/sec)   p_kst 2.117117e-04   p_cons 1.046730e-01   p_joint 5.333333e-04

Joint ci ratio: 1.593275e-01	ci left: 4.971399e-04	ci right 5.840483e-04	k: 604	n:1120000
Cons ci ratio: 1.083484e-02	ci left: 1.040748e-01	ci right 1.052094e-01	k: 117198	n:1120000
KS ci ratio: 2.524821e-01	ci left: 1.880330e-04	ci right 2.431774e-04	k: 240	n:1120000
MTTP   1120000 perm   725 sec   (1544 perm/sec)   p_kst 2.142857e-04   p_cons 1.046411e-01   p_joint 5.392857e-04

Joint ci ratio: 1.585433e-01	ci left: 4.978390e-04	ci right 5.844005e-04	k: 610	n:1130000
Cons ci ratio: 1.078686e-02	ci left: 1.040760e-01	ci right 1.052056e-01	k: 118243	n:1130000
KS ci ratio: 2.519600e-01	ci left: 1.871980e-04	ci right 2.419662e-04	k: 241	n:1130000
MTTP   1130000 perm   736 sec   (1535 perm/sec)   p_kst 2.132743e-04   p_cons 1.046398e-01   p_joint 5.398230e-04

Joint ci ratio: 1.572613e-01	ci left: 5.018974e-04	ci right 5.883923e-04	k: 620	n:1140000
Cons ci ratio: 1.073891e-02	ci left: 1.040878e-01	ci right 1.052125e-01	k: 119300	n:1140000
KS ci ratio: 2.509253e-01	ci left: 1.871998e-04	ci right 2.417084e-04	k: 243	n:1140000
MTTP   1140000 perm   747 sec   (1527 perm/sec)   p_kst 2.131579e-04   p_cons 1.046491e-01   p_joint 5.438596e-04

Joint ci ratio: 1.567573e-01	ci left: 5.008746e-04	ci right 5.868907e-04	k: 624	n:1150000
Cons ci ratio: 1.069239e-02	ci left: 1.040855e-01	ci right 1.052052e-01	k: 120341	n:1150000
KS ci ratio: 2.504128e-01	ci left: 1.863869e-04	ci right 2.405307e-04	k: 244	n:1150000
MTTP   1150000 perm   757 sec   (1519 perm/sec)   p_kst 2.121739e-04   p_cons 1.046443e-01   p_joint 5.426087e-04

Joint ci ratio: 1.561341e-01	ci left: 5.006983e-04	ci right 5.863103e-04	k: 629	n:1160000
Cons ci ratio: 1.064775e-02	ci left: 1.040608e-01	ci right 1.051756e-01	k: 121356	n:1160000
KS ci ratio: 2.499035e-01	ci left: 1.855881e-04	ci right 2.393731e-04	k: 245	n:1160000
MTTP   1160000 perm   768 sec   (1511 perm/sec)   p_kst 2.112069e-04   p_cons 1.046172e-01   p_joint 5.422414e-04

Joint ci ratio: 1.552737e-01	ci left: 5.021687e-04	ci right 5.875149e-04	k: 636	n:1170000
Cons ci ratio: 1.060283e-02	ci left: 1.040511e-01	ci right 1.051611e-01	k: 122388	n:1170000
KS ci ratio: 2.483934e-01	ci left: 1.864059e-04	ci right 2.400511e-04	k: 248	n:1170000
MTTP   1170000 perm   779 sec   (1503 perm/sec)   p_kst 2.119658e-04   p_cons 1.046051e-01   p_joint 5.435897e-04

Joint ci ratio: 1.550307e-01	ci left: 4.995421e-04	ci right 5.842967e-04	k: 638	n:1180000
Cons ci ratio: 1.055733e-02	ci left: 1.040619e-01	ci right 1.051672e-01	k: 123444	n:1180000
KS ci ratio: 2.478962e-01	ci left: 1.856210e-04	ci right 2.389168e-04	k: 249	n:1180000
MTTP   1180000 perm   789 sec   (1495 perm/sec)   p_kst 2.110169e-04   p_cons 1.046136e-01   p_joint 5.406780e-04

Joint ci ratio: 1.543079e-01	ci left: 5.001911e-04	ci right 5.846236e-04	k: 644	n:1190000
Cons ci ratio: 1.051317e-02	ci left: 1.040591e-01	ci right 1.051597e-01	k: 124484	n:1190000
KS ci ratio: 2.474020e-01	ci left: 1.848493e-04	ci right 2.378015e-04	k: 250	n:1190000
MTTP   1190000 perm   801 sec   (1486 perm/sec)   p_kst 2.100840e-04   p_cons 1.046084e-01   p_joint 5.411765e-04

Joint ci ratio: 1.631524e-01	ci left: 4.416042e-04	ci right 5.208392e-04	k: 576	n:1200000
Cons ci ratio: 1.046844e-02	ci left: 1.040763e-01	ci right 1.051723e-01	k: 125548	n:1200000
KS ci ratio: 2.469108e-01	ci left: 1.840906e-04	ci right 2.367047e-04	k: 251	n:1200000
MTTP   1200000 perm   812 sec   (1478 perm/sec)   p_kst 2.091667e-04   p_cons 1.046233e-01   p_joint 4.800000e-04

Joint ci ratio: 1.645859e-01	ci left: 4.300288e-04	ci right 5.079320e-04	k: 566	n:1210000
Cons ci ratio: 1.042533e-02	ci left: 1.040742e-01	ci right 1.051657e-01	k: 126589	n:1210000
KS ci ratio: 2.464224e-01	ci left: 1.833446e-04	ci right 2.356259e-04	k: 252	n:1210000
MTTP   1210000 perm   823 sec   (1470 perm/sec)   p_kst 2.082645e-04   p_cons 1.046190e-01   p_joint 4.677686e-04

Joint ci ratio: 1.637218e-01	ci left: 4.312200e-04	ci right 5.088884e-04	k: 572	n:1220000
Cons ci ratio: 1.038335e-02	ci left: 1.040616e-01	ci right 1.051485e-01	k: 127617	n:1220000
KS ci ratio: 2.449742e-01	ci left: 1.841494e-04	ci right 2.363046e-04	k: 255	n:1220000
MTTP   1220000 perm   834 sec   (1463 perm/sec)   p_kst 2.090164e-04   p_cons 1.046041e-01   p_joint 4.688525e-04

Joint ci ratio: 1.752720e-01	ci left: 3.708782e-04	ci right 4.428905e-04	k: 499	n:1230000
Cons ci ratio: 1.034092e-02	ci left: 1.040662e-01	ci right 1.051487e-01	k: 128666	n:1230000
KS ci ratio: 2.449744e-01	ci left: 1.826522e-04	ci right 2.343835e-04	k: 255	n:1230000
MTTP   1230000 perm   845 sec   (1456 perm/sec)   p_kst 2.073171e-04   p_cons 1.046065e-01   p_joint 4.056911e-04

Joint ci ratio: 1.756241e-01	ci left: 3.663451e-04	ci right 4.376352e-04	k: 497	n:1240000
Cons ci ratio: 1.030047e-02	ci left: 1.040442e-01	ci right 1.051222e-01	k: 129682	n:1240000
KS ci ratio: 2.449746e-01	ci left: 1.811792e-04	ci right 2.324933e-04	k: 255	n:1240000
MTTP   1240000 perm   856 sec   (1448 perm/sec)   p_kst 2.056452e-04   p_cons 1.045823e-01   p_joint 4.008065e-04

Joint ci ratio: 1.749230e-01	ci left: 3.664740e-04	ci right 4.374744e-04	k: 501	n:1250000
Cons ci ratio: 1.025997e-02	ci left: 1.040321e-01	ci right 1.051057e-01	k: 130710	n:1250000
KS ci ratio: 2.444976e-01	ci left: 1.804807e-04	ci right 2.314823e-04	k: 256	n:1250000
MTTP   1250000 perm   867 sec   (1441 perm/sec)   p_kst 2.048000e-04   p_cons 1.045680e-01   p_joint 4.008000e-04

Joint ci ratio: 1.737158e-01	ci left: 3.688786e-04	ci right 4.398000e-04	k: 508	n:1260000
Cons ci ratio: 1.021777e-02	ci left: 1.040598e-01	ci right 1.051293e-01	k: 131788	n:1260000
KS ci ratio: 2.435518e-01	ci left: 1.805385e-04	ci right 2.313293e-04	k: 258	n:1260000
MTTP   1260000 perm   879 sec   (1434 perm/sec)   p_kst 2.047619e-04   p_cons 1.045937e-01   p_joint 4.031746e-04

Joint ci ratio: 1.732062e-01	ci left: 3.682337e-04	ci right 4.388017e-04	k: 511	n:1270000
Cons ci ratio: 1.017918e-02	ci left: 1.040305e-01	ci right 1.050957e-01	k: 132794	n:1270000
KS ci ratio: 2.430831e-01	ci left: 1.798564e-04	ci right 2.303432e-04	k: 259	n:1270000
MTTP   1270000 perm   890 sec   (1426 perm/sec)   p_kst 2.039370e-04   p_cons 1.045622e-01   p_joint 4.023622e-04

Joint ci ratio: 1.723665e-01	ci left: 3.690942e-04	ci right 4.394486e-04	k: 516	n:1280000
Cons ci ratio: 1.014169e-02	ci left: 1.039893e-01	ci right 1.050500e-01	k: 133784	n:1280000
KS ci ratio: 2.421535e-01	ci left: 1.799188e-04	ci right 2.302009e-04	k: 261	n:1280000
MTTP   1280000 perm   902 sec   (1419 perm/sec)   p_kst 2.039063e-04   p_cons 1.045187e-01   p_joint 4.031250e-04

Joint ci ratio: 1.713748e-01	ci left: 3.706842e-04	ci right 4.408930e-04	k: 522	n:1290000
Cons ci ratio: 1.010302e-02	ci left: 1.039780e-01	ci right 1.050346e-01	k: 134812	n:1290000
KS ci ratio: 2.421537e-01	ci left: 1.785240e-04	ci right 2.284165e-04	k: 261	n:1290000
MTTP   1290000 perm   914 sec   (1411 perm/sec)   p_kst 2.023256e-04   p_cons 1.045054e-01   p_joint 4.046512e-04

Joint ci ratio: 1.713751e-01	ci left: 3.678327e-04	ci right 4.375016e-04	k: 522	n:1300000
Cons ci ratio: 1.006422e-02	ci left: 1.039777e-01	ci right 1.050302e-01	k: 135854	n:1300000
KS ci ratio: 2.416930e-01	ci left: 1.778734e-04	ci right 2.274752e-04	k: 262	n:1300000
MTTP   1300000 perm   926 sec   (1404 perm/sec)   p_kst 2.015385e-04   p_cons 1.045031e-01   p_joint 4.015385e-04

Joint ci ratio: 1.707235e-01	ci left: 3.679475e-04	ci right 4.373459e-04	k: 526	n:1310000
Cons ci ratio: 1.002675e-02	ci left: 1.039607e-01	ci right 1.050090e-01	k: 136874	n:1310000
KS ci ratio: 2.416932e-01	ci left: 1.765155e-04	ci right 2.257388e-04	k: 262	n:1310000
MTTP   1310000 perm   938 sec   (1397 perm/sec)   p_kst 2.000000e-04   p_cons 1.044840e-01   p_joint 4.015267e-04

Joint ci ratio: 1.707237e-01	ci left: 3.651600e-04	ci right 4.340327e-04	k: 526	n:1320000
Cons ci ratio: 9.990435e-03	ci left: 1.039303e-01	ci right 1.049745e-01	k: 137876	n:1320000
KS ci ratio: 2.412351e-01	ci left: 1.758900e-04	ci right 2.248319e-04	k: 263	n:1320000
MTTP   1320000 perm   950 sec   (1390 perm/sec)   p_kst 1.992424e-04   p_cons 1.044515e-01   p_joint 3.984848e-04

Joint ci ratio: 1.702399e-01	ci left: 3.645738e-04	ci right 4.331211e-04	k: 529	n:1330000
Cons ci ratio: 9.953507e-03	ci left: 1.039191e-01	ci right 1.049593e-01	k: 138903	n:1330000
KS ci ratio: 2.407796e-01	ci left: 1.752740e-04	ci right 2.239387e-04	k: 264	n:1330000
MTTP   1330000 perm   962 sec   (1383 perm/sec)   p_kst 1.984962e-04   p_cons 1.044383e-01   p_joint 3.977444e-04

Joint ci ratio: 1.699198e-01	ci left: 3.632821e-04	ci right 4.314449e-04	k: 531	n:1340000
Cons ci ratio: 9.916155e-03	ci left: 1.039237e-01	ci right 1.049601e-01	k: 139951	n:1340000
KS ci ratio: 2.407798e-01	ci left: 1.739660e-04	ci right 2.222675e-04	k: 264	n:1340000
MTTP   1340000 perm   974 sec   (1376 perm/sec)   p_kst 1.970149e-04   p_cons 1.044410e-01   p_joint 3.962687e-04

Joint ci ratio: 1.692845e-01	ci left: 3.634283e-04	ci right 4.313377e-04	k: 535	n:1350000
Cons ci ratio: 9.878516e-03	ci left: 1.039416e-01	ci right 1.049742e-01	k: 141017	n:1350000
KS ci ratio: 2.394283e-01	ci left: 1.747659e-04	ci right 2.229767e-04	k: 267	n:1350000
MTTP   1350000 perm   986 sec   (1369 perm/sec)   p_kst 1.977778e-04   p_cons 1.044570e-01   p_joint 3.962963e-04

Joint ci ratio: 1.683448e-01	ci left: 3.649815e-04	ci right 4.327640e-04	k: 541	n:1360000
Cons ci ratio: 9.841998e-03	ci left: 1.039460e-01	ci right 1.049748e-01	k: 142065	n:1360000
KS ci ratio: 2.380992e-01	ci left: 1.755548e-04	ci right 2.236748e-04	k: 270	n:1360000
MTTP   1360000 perm   999 sec   (1361 perm/sec)   p_kst 1.985294e-04   p_cons 1.044596e-01   p_joint 3.977941e-04

Joint ci ratio: 1.686566e-01	ci left: 3.609190e-04	ci right 4.280839e-04	k: 539	n:1370000
Cons ci ratio: 9.806763e-03	ci left: 1.039336e-01	ci right 1.049586e-01	k: 143090	n:1370000
KS ci ratio: 2.380994e-01	ci left: 1.742734e-04	ci right 2.220421e-04	k: 270	n:1370000
MTTP   1370000 perm   1011 sec   (1355 perm/sec)   p_kst 1.970803e-04   p_cons 1.044453e-01   p_joint 3.934307e-04

Joint ci ratio: 1.675738e-01	ci left: 3.631627e-04	ci right 4.302675e-04	k: 546	n:1380000
Cons ci ratio: 9.772017e-03	ci left: 1.039192e-01	ci right 1.049404e-01	k: 144112	n:1380000
KS ci ratio: 2.372256e-01	ci left: 1.743735e-04	ci right 2.219686e-04	k: 272	n:1380000
MTTP   1380000 perm   1024 sec   (1348 perm/sec)   p_kst 1.971014e-04   p_cons 1.044290e-01   p_joint 3.956522e-04

Joint ci ratio: 1.761595e-01	ci left: 3.247476e-04	ci right 3.881560e-04	k: 494	n:1390000
Cons ci ratio: 9.737675e-03	ci left: 1.039043e-01	ci right 1.049218e-01	k: 145133	n:1390000
KS ci ratio: 2.355064e-01	ci left: 1.758263e-04	ci right 2.234194e-04	k: 276	n:1390000
MTTP   1390000 perm   1036 sec   (1342 perm/sec)   p_kst 1.985612e-04   p_cons 1.044122e-01   p_joint 3.553957e-04

Joint ci ratio: 1.754520e-01	ci left: 3.251594e-04	ci right 3.883662e-04	k: 498	n:1400000
Cons ci ratio: 9.700987e-03	ci left: 1.039417e-01	ci right 1.049556e-01	k: 146227	n:1400000
KS ci ratio: 2.342413e-01	ci left: 1.765872e-04	ci right 2.240923e-04	k: 279	n:1400000
MTTP   1400000 perm   1048 sec   (1336 perm/sec)   p_kst 1.992857e-04   p_cons 1.044479e-01   p_joint 3.557143e-04

Joint ci ratio: 1.770567e-01	ci left: 3.167518e-04	ci right 3.789477e-04	k: 489	n:1410000
Cons ci ratio: 9.667826e-03	ci left: 1.039184e-01	ci right 1.049286e-01	k: 147236	n:1410000
KS ci ratio: 2.338242e-01	ci left: 1.760024e-04	ci right 2.232537e-04	k: 280	n:1410000
MTTP   1410000 perm   1061 sec   (1329 perm/sec)   p_kst 1.985816e-04   p_cons 1.044227e-01   p_joint 3.468085e-04

Joint ci ratio: 1.761601e-01	ci left: 3.178866e-04	ci right 3.799557e-04	k: 494	n:1420000
Cons ci ratio: 9.634386e-03	ci left: 1.039074e-01	ci right 1.049140e-01	k: 148262	n:1420000
KS ci ratio: 2.334093e-01	ci left: 1.754260e-04	ci right 2.224269e-04	k: 281	n:1420000
MTTP   1420000 perm   1073 sec   (1323 perm/sec)   p_kst 1.978873e-04   p_cons 1.044099e-01   p_joint 3.478873e-04

Joint ci ratio: 1.327074e-01	ci left: 5.693182e-04	ci right 6.509083e-04	k: 871	n:1430000
Cons ci ratio: 9.601721e-03	ci left: 1.038881e-01	ci right 1.048911e-01	k: 149276	n:1430000
KS ci ratio: 2.329967e-01	ci left: 1.748577e-04	ci right 2.216116e-04	k: 282	n:1430000
MTTP   1430000 perm   1086 sec   (1317 perm/sec)   p_kst 1.972028e-04   p_cons 1.043888e-01   p_joint 6.090909e-04

Joint ci ratio: 1.321027e-01	ci left: 5.707361e-04	ci right 6.521275e-04	k: 879	n:1440000
Cons ci ratio: 9.566934e-03	ci left: 1.039170e-01	ci right 1.049166e-01	k: 150359	n:1440000
KS ci ratio: 2.313671e-01	ci left: 1.762596e-04	ci right 2.230116e-04	k: 286	n:1440000
MTTP   1440000 perm   1099 sec   (1310 perm/sec)   p_kst 1.986111e-04   p_cons 1.044160e-01   p_joint 6.104167e-04

Joint ci ratio: 1.321782e-01	ci left: 5.661331e-04	ci right 6.469177e-04	k: 878	n:1450000
Cons ci ratio: 9.533964e-03	ci left: 1.039172e-01	ci right 1.049134e-01	k: 151401	n:1450000
KS ci ratio: 2.301672e-01	ci left: 1.769934e-04	ci right 2.236620e-04	k: 289	n:1450000
MTTP   1450000 perm   1112 sec   (1304 perm/sec)   p_kst 1.993103e-04   p_cons 1.044145e-01   p_joint 6.055172e-04

Joint ci ratio: 1.322538e-01	ci left: 5.615931e-04	ci right 6.417793e-04	k: 877	n:1460000
Cons ci ratio: 9.500567e-03	ci left: 1.039325e-01	ci right 1.049253e-01	k: 152465	n:1460000
KS ci ratio: 2.289858e-01	ci left: 1.777177e-04	ci right 2.243028e-04	k: 292	n:1460000
MTTP   1460000 perm   1125 sec   (1298 perm/sec)   p_kst 2.000000e-04   p_cons 1.044281e-01   p_joint 6.006849e-04

Joint ci ratio: 1.316552e-01	ci left: 5.630353e-04	ci right 6.430352e-04	k: 885	n:1470000
Cons ci ratio: 9.469653e-03	ci left: 1.039055e-01	ci right 1.048947e-01	k: 153467	n:1470000
KS ci ratio: 2.278224e-01	ci left: 1.784328e-04	ci right 2.249343e-04	k: 295	n:1470000
MTTP   1470000 perm   1138 sec   (1292 perm/sec)   p_kst 2.006803e-04   p_cons 1.043993e-01   p_joint 6.020408e-04

Joint ci ratio: 1.309183e-01	ci left: 5.657659e-04	ci right 6.456688e-04	k: 895	n:1480000
Cons ci ratio: 9.437846e-03	ci left: 1.039024e-01	ci right 1.048883e-01	k: 154504	n:1480000
KS ci ratio: 2.259220e-01	ci left: 1.804136e-04	ci right 2.269845e-04	k: 300	n:1480000
MTTP   1480000 perm   1151 sec   (1286 perm/sec)   p_kst 2.027027e-04   p_cons 1.043946e-01   p_joint 6.047297e-04

Joint ci ratio: 1.319541e-01	ci left: 5.528815e-04	ci right 6.316310e-04	k: 881	n:1490000
Cons ci ratio: 9.404871e-03	ci left: 1.039289e-01	ci right 1.049116e-01	k: 155585	n:1490000
KS ci ratio: 2.248044e-01	ci left: 1.811026e-04	ci right 2.275880e-04	k: 303	n:1490000
MTTP   1490000 perm   1164 sec   (1280 perm/sec)   p_kst 2.033557e-04   p_cons 1.044195e-01   p_joint 5.912752e-04

Joint ci ratio: 1.333227e-01	ci left: 5.375935e-04	ci right 6.150226e-04	k: 863	n:1500000
Cons ci ratio: 9.373376e-03	ci left: 1.039324e-01	ci right 1.049118e-01	k: 156632	n:1500000
KS ci ratio: 2.240686e-01	ci left: 1.811536e-04	ci right 2.274789e-04	k: 305	n:1500000
MTTP   1500000 perm   1178 sec   (1273 perm/sec)   p_kst 2.033333e-04   p_cons 1.044213e-01   p_joint 5.753333e-04

Joint ci ratio: 1.356196e-01	ci left: 5.154736e-04	ci right 5.910991e-04	k: 834	n:1510000
Cons ci ratio: 9.342559e-03	ci left: 1.039286e-01	ci right 1.049047e-01	k: 157668	n:1510000
KS ci ratio: 2.233399e-01	ci left: 1.812042e-04	ci right 2.273710e-04	k: 307	n:1510000
MTTP   1510000 perm   1191 sec   (1267 perm/sec)   p_kst 2.033113e-04   p_cons 1.044159e-01   p_joint 5.523179e-04

Joint ci ratio: 1.377831e-01	ci left: 4.955617e-04	ci right 5.695209e-04	k: 808	n:1520000
Cons ci ratio: 9.312600e-03	ci left: 1.039137e-01	ci right 1.048865e-01	k: 158687	n:1520000
KS ci ratio: 2.226183e-01	ci left: 1.812544e-04	ci right 2.272643e-04	k: 309	n:1520000
MTTP   1520000 perm   1205 sec   (1261 perm/sec)   p_kst 2.032895e-04   p_cons 1.043993e-01   p_joint 5.315789e-04

Joint ci ratio: 1.382114e-01	ci left: 4.891675e-04	ci right 5.624179e-04	k: 803	n:1530000
Cons ci ratio: 9.282604e-03	ci left: 1.039055e-01	ci right 1.048751e-01	k: 159716	n:1530000
KS ci ratio: 2.222601e-01	ci left: 1.806869e-04	ci right 2.264689e-04	k: 310	n:1530000
MTTP   1530000 perm   1219 sec   (1255 perm/sec)   p_kst 2.026144e-04   p_cons 1.043895e-01   p_joint 5.248366e-04

Joint ci ratio: 1.376985e-01	ci left: 4.897527e-04	ci right 5.627963e-04	k: 809	n:1540000
Cons ci ratio: 9.253056e-03	ci left: 1.038941e-01	ci right 1.048606e-01	k: 160740	n:1540000
KS ci ratio: 2.215489e-01	ci left: 1.807401e-04	ci right 2.263691e-04	k: 312	n:1540000
MTTP   1540000 perm   1232 sec   (1250 perm/sec)   p_kst 2.025974e-04   p_cons 1.043766e-01   p_joint 5.253247e-04

Joint ci ratio: 1.370234e-01	ci left: 4.915770e-04	ci right 5.645039e-04	k: 817	n:1550000
Cons ci ratio: 9.223152e-03	ci left: 1.038959e-01	ci right 1.048592e-01	k: 161784	n:1550000
KS ci ratio: 2.201465e-01	ci left: 1.820119e-04	ci right 2.276318e-04	k: 316	n:1550000
MTTP   1550000 perm   1245 sec   (1245 perm/sec)   p_kst 2.038710e-04   p_cons 1.043768e-01   p_joint 5.270968e-04

Joint ci ratio: 1.367729e-01	ci left: 4.902830e-04	ci right 5.628742e-04	k: 820	n:1560000
Cons ci ratio: 9.193347e-03	ci left: 1.039014e-01	ci right 1.048616e-01	k: 162834	n:1560000
KS ci ratio: 2.198002e-01	ci left: 1.814509e-04	ci right 2.268489e-04	k: 317	n:1560000
MTTP   1560000 perm   1259 sec   (1239 perm/sec)   p_kst 2.032051e-04   p_cons 1.043808e-01   p_joint 5.256410e-04

Joint ci ratio: 1.363583e-01	ci left: 4.902361e-04	ci right 5.625825e-04	k: 825	n:1570000
Cons ci ratio: 9.166046e-03	ci left: 1.038617e-01	ci right 1.048187e-01	k: 163813	n:1570000
KS ci ratio: 2.187706e-01	ci left: 1.821011e-04	ci right 2.274196e-04	k: 320	n:1570000
MTTP   1570000 perm   1272 sec   (1234 perm/sec)   p_kst 2.038217e-04   p_cons 1.043395e-01   p_joint 5.254777e-04

Joint ci ratio: 1.363585e-01	ci left: 4.871333e-04	ci right 5.590219e-04	k: 825	n:1580000
Cons ci ratio: 9.136480e-03	ci left: 1.038737e-01	ci right 1.048277e-01	k: 164873	n:1580000
KS ci ratio: 2.177554e-01	ci left: 1.827435e-04	ci right 2.279826e-04	k: 323	n:1580000
MTTP   1580000 perm   1286 sec   (1228 perm/sec)   p_kst 2.044304e-04   p_cons 1.043500e-01   p_joint 5.221519e-04

Joint ci ratio: 1.370243e-01	ci left: 4.792100e-04	ci right 5.503028e-04	k: 817	n:1590000
Cons ci ratio: 9.108669e-03	ci left: 1.038554e-01	ci right 1.048064e-01	k: 165885	n:1590000
KS ci ratio: 2.167541e-01	ci left: 1.833783e-04	ci right 2.285380e-04	k: 326	n:1590000
MTTP   1590000 perm   1301 sec   (1222 perm/sec)   p_kst 2.050314e-04   p_cons 1.043302e-01   p_joint 5.138365e-04

Joint ci ratio: 1.365245e-01	ci left: 4.798367e-04	ci right 5.507416e-04	k: 823	n:1600000
Cons ci ratio: 9.079076e-03	ci left: 1.038792e-01	ci right 1.048272e-01	k: 166964	n:1600000
KS ci ratio: 2.164235e-01	ci left: 1.828233e-04	ci right 2.277685e-04	k: 327	n:1600000
MTTP   1600000 perm   1315 sec   (1217 perm/sec)   p_kst 2.043750e-04   p_cons 1.043525e-01   p_joint 5.143750e-04

Joint ci ratio: 1.361121e-01	ci left: 4.798560e-04	ci right 5.505323e-04	k: 828	n:1610000
Cons ci ratio: 9.049379e-03	ci left: 1.039107e-01	ci right 1.048559e-01	k: 168056	n:1610000
KS ci ratio: 2.154405e-01	ci left: 1.834503e-04	ci right 2.283178e-04	k: 330	n:1610000
MTTP   1610000 perm   1329 sec   (1211 perm/sec)   p_kst 2.049689e-04   p_cons 1.043826e-01   p_joint 5.142857e-04

Joint ci ratio: 1.355410e-01	ci left: 4.810681e-04	ci right 5.516017e-04	k: 835	n:1620000
Cons ci ratio: 9.020924e-03	ci left: 1.039221e-01	ci right 1.048645e-01	k: 169116	n:1620000
KS ci ratio: 2.151158e-01	ci left: 1.829019e-04	ci right 2.275589e-04	k: 331	n:1620000
MTTP   1620000 perm   1344 sec   (1206 perm/sec)   p_kst 2.043210e-04   p_cons 1.043926e-01   p_joint 5.154321e-04

Joint ci ratio: 1.351375e-01	ci left: 4.810804e-04	ci right 5.513889e-04	k: 840	n:1630000
Cons ci ratio: 8.992441e-03	ci left: 1.039395e-01	ci right 1.048790e-01	k: 170186	n:1630000
KS ci ratio: 2.144708e-01	ci left: 1.829408e-04	ci right 2.274558e-04	k: 333	n:1630000
MTTP   1630000 perm   1358 sec   (1200 perm/sec)   p_kst 2.042945e-04   p_cons 1.044086e-01   p_joint 5.153374e-04

Joint ci ratio: 1.157556e-01	ci left: 6.583246e-04	ci right 7.397967e-04	k: 1145	n:1640000
Cons ci ratio: 8.965336e-03	ci left: 1.039336e-01	ci right 1.048702e-01	k: 171218	n:1640000
KS ci ratio: 2.154409e-01	ci left: 1.800945e-04	ci right 2.241413e-04	k: 330	n:1640000
MTTP   1640000 perm   1372 sec   (1195 perm/sec)   p_kst 2.012195e-04   p_cons 1.044012e-01   p_joint 6.981707e-04

Joint ci ratio: 1.183686e-01	ci left: 6.249183e-04	ci right 7.041241e-04	k: 1095	n:1650000
Cons ci ratio: 8.937462e-03	ci left: 1.039489e-01	ci right 1.048827e-01	k: 172285	n:1650000
KS ci ratio: 2.154410e-01	ci left: 1.790030e-04	ci right 2.227829e-04	k: 330	n:1650000
MTTP   1650000 perm   1386 sec   (1190 perm/sec)   p_kst 2.000000e-04   p_cons 1.044152e-01   p_joint 6.636364e-04

Joint ci ratio: 1.179923e-01	ci left: 6.252460e-04	ci right 7.042238e-04	k: 1102	n:1660000
Cons ci ratio: 8.911223e-03	ci left: 1.039352e-01	ci right 1.048662e-01	k: 173304	n:1660000
KS ci ratio: 2.151164e-01	ci left: 1.784946e-04	ci right 2.220756e-04	k: 331	n:1660000
MTTP   1660000 perm   1400 sec   (1185 perm/sec)   p_kst 1.993976e-04   p_cons 1.044000e-01   p_joint 6.638554e-04

Joint ci ratio: 1.174610e-01	ci left: 6.273137e-04	ci right 7.061711e-04	k: 1112	n:1670000
Cons ci ratio: 8.882711e-03	ci left: 1.039743e-01	ci right 1.049025e-01	k: 174411	n:1670000
KS ci ratio: 2.147932e-01	ci left: 1.779923e-04	ci right 2.213769e-04	k: 332	n:1670000
MTTP   1670000 perm   1415 sec   (1181 perm/sec)   p_kst 1.988024e-04   p_cons 1.044377e-01   p_joint 6.658683e-04

Joint ci ratio: 1.169888e-01	ci left: 6.287798e-04	ci right 7.074819e-04	k: 1121	n:1680000
Cons ci ratio: 8.857683e-03	ci left: 1.039451e-01	ci right 1.048705e-01	k: 175404	n:1680000
KS ci ratio: 2.128836e-01	ci left: 1.803130e-04	ci right 2.238215e-04	k: 338	n:1680000
MTTP   1680000 perm   1429 sec   (1175 perm/sec)   p_kst 2.011905e-04   p_cons 1.044071e-01   p_joint 6.672619e-04

Joint ci ratio: 1.167810e-01	ci left: 6.273568e-04	ci right 7.057316e-04	k: 1125	n:1690000
Cons ci ratio: 8.831916e-03	ci left: 1.039364e-01	ci right 1.048590e-01	k: 176431	n:1690000
KS ci ratio: 2.122584e-01	ci left: 1.803665e-04	ci right 2.237435e-04	k: 340	n:1690000
MTTP   1690000 perm   1444 sec   (1170 perm/sec)   p_kst 2.011834e-04   p_cons 1.043970e-01   p_joint 6.656805e-04

Joint ci ratio: 1.186953e-01	ci left: 6.031132e-04	ci right 6.797810e-04	k: 1089	n:1700000
Cons ci ratio: 8.804820e-03	ci left: 1.039607e-01	ci right 1.048807e-01	k: 177514	n:1700000
KS ci ratio: 2.116387e-01	ci left: 1.804196e-04	ci right 2.236661e-04	k: 342	n:1700000
MTTP   1700000 perm   1460 sec   (1164 perm/sec)   p_kst 2.011765e-04   p_cons 1.044200e-01   p_joint 6.405882e-04

Joint ci ratio: 1.183159e-01	ci left: 6.035584e-04	ci right 6.800205e-04	k: 1096	n:1710000
Cons ci ratio: 8.778302e-03	ci left: 1.039777e-01	ci right 1.048950e-01	k: 178585	n:1710000
KS ci ratio: 2.110244e-01	ci left: 1.804722e-04	ci right 2.235896e-04	k: 344	n:1710000
MTTP   1710000 perm   1476 sec   (1158 perm/sec)   p_kst 2.011696e-04   p_cons 1.044357e-01   p_joint 6.409357e-04

Joint ci ratio: 1.179937e-01	ci left: 6.034346e-04	ci right 6.796584e-04	k: 1102	n:1720000
Cons ci ratio: 8.752756e-03	ci left: 1.039788e-01	ci right 1.048935e-01	k: 179629	n:1720000
KS ci ratio: 2.104153e-01	ci left: 1.805243e-04	ci right 2.235137e-04	k: 346	n:1720000
MTTP   1720000 perm   1491 sec   (1153 perm/sec)   p_kst 2.011628e-04   p_cons 1.044355e-01   p_joint 6.406977e-04

Joint ci ratio: 1.177272e-01	ci left: 6.027515e-04	ci right 6.787050e-04	k: 1107	n:1730000
Cons ci ratio: 8.727082e-03	ci left: 1.039874e-01	ci right 1.048995e-01	k: 180686	n:1730000
KS ci ratio: 2.104155e-01	ci left: 1.794808e-04	ci right 2.222217e-04	k: 346	n:1730000
MTTP   1730000 perm   1506 sec   (1148 perm/sec)   p_kst 2.000000e-04   p_cons 1.044428e-01   p_joint 6.398844e-04

Joint ci ratio: 1.174098e-01	ci left: 6.026343e-04	ci right 6.783541e-04	k: 1113	n:1740000
Cons ci ratio: 8.699708e-03	ci left: 1.040372e-01	ci right 1.049468e-01	k: 181815	n:1740000
KS ci ratio: 2.098117e-01	ci left: 1.795383e-04	ci right 2.221544e-04	k: 348	n:1740000
MTTP   1740000 perm   1522 sec   (1143 perm/sec)   p_kst 2.000000e-04   p_cons 1.044914e-01   p_joint 6.396552e-04

Joint ci ratio: 1.177277e-01	ci left: 5.958628e-04	ci right 6.709486e-04	k: 1107	n:1750000
Cons ci ratio: 8.674628e-03	ci left: 1.040426e-01	ci right 1.049496e-01	k: 182867	n:1750000
KS ci ratio: 2.095118e-01	ci left: 1.790538e-04	ci right 2.214863e-04	k: 349	n:1750000
MTTP   1750000 perm   1537 sec   (1138 perm/sec)   p_kst 1.994286e-04   p_cons 1.044954e-01   p_joint 6.325714e-04

Joint ci ratio: 1.173575e-01	ci left: 5.963376e-04	ci right 6.712305e-04	k: 1114	n:1760000
Cons ci ratio: 8.649318e-03	ci left: 1.040575e-01	ci right 1.049620e-01	k: 183936	n:1760000
KS ci ratio: 2.083246e-01	ci left: 1.801903e-04	ci right 2.226193e-04	k: 353	n:1760000
MTTP   1760000 perm   1553 sec   (1133 perm/sec)   p_kst 2.005682e-04   p_cons 1.045091e-01   p_joint 6.329545e-04

Joint ci ratio: 1.172525e-01	ci left: 5.940652e-04	ci right 6.686014e-04	k: 1116	n:1770000
Cons ci ratio: 8.624957e-03	ci left: 1.040565e-01	ci right 1.049584e-01	k: 184977	n:1770000
KS ci ratio: 2.083248e-01	ci left: 1.791722e-04	ci right 2.213616e-04	k: 353	n:1770000
MTTP   1770000 perm   1568 sec   (1129 perm/sec)   p_kst 1.994350e-04   p_cons 1.045068e-01   p_joint 6.305085e-04

Joint ci ratio: 1.168868e-01	ci left: 5.945452e-04	ci right 6.688929e-04	k: 1123	n:1780000
Cons ci ratio: 8.601085e-03	ci left: 1.040493e-01	ci right 1.049486e-01	k: 186007	n:1780000
KS ci ratio: 2.077387e-01	ci left: 1.792307e-04	ci right 2.213000e-04	k: 355	n:1780000
MTTP   1780000 perm   1583 sec   (1124 perm/sec)   p_kst 1.994382e-04   p_cons 1.044983e-01   p_joint 6.308989e-04

Joint ci ratio: 1.163702e-01	ci left: 5.966474e-04	ci right 6.709055e-04	k: 1133	n:1790000
Cons ci ratio: 8.578613e-03	ci left: 1.040160e-01	ci right 1.049127e-01	k: 186990	n:1790000
KS ci ratio: 2.068689e-01	ci left: 1.798184e-04	ci right 2.218266e-04	k: 358	n:1790000
MTTP   1790000 perm   1599 sec   (1119 perm/sec)   p_kst 2.000000e-04   p_cons 1.044637e-01   p_joint 6.329609e-04

Joint ci ratio: 1.161145e-01	ci left: 5.960297e-04	ci right 6.700368e-04	k: 1138	n:1800000
Cons ci ratio: 8.554132e-03	ci left: 1.040307e-01	ci right 1.049250e-01	k: 188059	n:1800000
KS ci ratio: 2.068690e-01	ci left: 1.788194e-04	ci right 2.205942e-04	k: 358	n:1800000
MTTP   1800000 perm   1615 sec   (1115 perm/sec)   p_kst 1.988889e-04   p_cons 1.044772e-01   p_joint 6.322222e-04

Joint ci ratio: 1.156584e-01	ci left: 5.975650e-04	ci right 6.714513e-04	k: 1147	n:1810000
Cons ci ratio: 8.530514e-03	ci left: 1.040310e-01	ci right 1.049228e-01	k: 189102	n:1810000
KS ci ratio: 2.057260e-01	ci left: 1.799272e-04	ci right 2.216994e-04	k: 362	n:1810000
MTTP   1810000 perm   1630 sec   (1110 perm/sec)   p_kst 2.000000e-04   p_cons 1.044762e-01   p_joint 6.337017e-04

Joint ci ratio: 1.153574e-01	ci left: 5.974831e-04	ci right 6.711539e-04	k: 1153	n:1820000
Cons ci ratio: 8.507465e-03	ci left: 1.040230e-01	ci right 1.049123e-01	k: 190130	n:1820000
KS ci ratio: 2.054432e-01	ci left: 1.794598e-04	ci right 2.210590e-04	k: 363	n:1820000
MTTP   1820000 perm   1646 sec   (1106 perm/sec)   p_kst 1.994505e-04   p_cons 1.044670e-01   p_joint 6.335165e-04

Joint ci ratio: 1.152078e-01	ci left: 5.958102e-04	ci right 6.691730e-04	k: 1156	n:1830000
Cons ci ratio: 8.485147e-03	ci left: 1.040031e-01	ci right 1.048899e-01	k: 191136	n:1830000
KS ci ratio: 2.051617e-01	ci left: 1.789975e-04	ci right 2.204255e-04	k: 364	n:1830000
MTTP   1830000 perm   1662 sec   (1101 perm/sec)   p_kst 1.989071e-04   p_cons 1.044459e-01   p_joint 6.316940e-04

Joint ci ratio: 1.149597e-01	ci left: 5.952113e-04	ci right 6.683318e-04	k: 1161	n:1840000
Cons ci ratio: 8.462733e-03	ci left: 1.039895e-01	ci right 1.048738e-01	k: 192153	n:1840000
KS ci ratio: 2.048812e-01	ci left: 1.785403e-04	ci right 2.197989e-04	k: 365	n:1840000
MTTP   1840000 perm   1678 sec   (1097 perm/sec)   p_kst 1.983696e-04   p_cons 1.044310e-01   p_joint 6.309783e-04

Joint ci ratio: 1.152082e-01	ci left: 5.893689e-04	ci right 6.619389e-04	k: 1156	n:1850000
Cons ci ratio: 8.440301e-03	ci left: 1.039802e-01	ci right 1.048621e-01	k: 193178	n:1850000
KS ci ratio: 2.046020e-01	ci left: 1.780880e-04	ci right 2.191790e-04	k: 366	n:1850000
MTTP   1850000 perm   1694 sec   (1092 perm/sec)   p_kst 1.978378e-04   p_cons 1.044205e-01   p_joint 6.248649e-04

Joint ci ratio: 1.149106e-01	ci left: 5.893332e-04	ci right 6.616987e-04	k: 1162	n:1860000
Cons ci ratio: 8.417538e-03	ci left: 1.039824e-01	ci right 1.048619e-01	k: 194224	n:1860000
KS ci ratio: 2.040468e-01	ci left: 1.781508e-04	ci right 2.191308e-04	k: 368	n:1860000
MTTP   1860000 perm   1710 sec   (1088 perm/sec)   p_kst 1.978495e-04   p_cons 1.044215e-01   p_joint 6.247312e-04

Joint ci ratio: 1.147628e-01	ci left: 5.877399e-04	ci right 6.598105e-04	k: 1165	n:1870000
Cons ci ratio: 8.393375e-03	ci left: 1.040197e-01	ci right 1.048970e-01	k: 195336	n:1870000
KS ci ratio: 2.032223e-01	ci left: 1.787206e-04	ci right 2.196450e-04	k: 371	n:1870000
MTTP   1870000 perm   1727 sec   (1083 perm/sec)   p_kst 1.983957e-04   p_cons 1.044578e-01   p_joint 6.229947e-04

Joint ci ratio: 1.145666e-01	ci left: 5.866802e-04	ci right 6.584896e-04	k: 1169	n:1880000
Cons ci ratio: 8.371251e-03	ci left: 1.040158e-01	ci right 1.048907e-01	k: 196371	n:1880000
KS ci ratio: 2.026782e-01	ci left: 1.787797e-04	ci right 2.195945e-04	k: 373	n:1880000
MTTP   1880000 perm   1743 sec   (1079 perm/sec)   p_kst 1.984043e-04   p_cons 1.044527e-01   p_joint 6.218085e-04

Joint ci ratio: 1.143226e-01	ci left: 5.861458e-04	ci right 6.577267e-04	k: 1174	n:1890000
Cons ci ratio: 8.349158e-03	ci left: 1.040151e-01	ci right 1.048877e-01	k: 197412	n:1890000
KS ci ratio: 2.018701e-01	ci left: 1.793407e-04	ci right 2.201002e-04	k: 376	n:1890000
MTTP   1890000 perm   1760 sec   (1074 perm/sec)   p_kst 1.989418e-04   p_cons 1.044508e-01   p_joint 6.211640e-04

Joint ci ratio: 1.144691e-01	ci left: 5.815270e-04	ci right 6.526410e-04	k: 1171	n:1900000
Cons ci ratio: 8.327076e-03	ci left: 1.040181e-01	ci right 1.048884e-01	k: 198460	n:1900000
KS ci ratio: 2.016029e-01	ci left: 1.788965e-04	ci right 2.194946e-04	k: 377	n:1900000
MTTP   1900000 perm   1776 sec   (1070 perm/sec)   p_kst 1.984211e-04   p_cons 1.044526e-01   p_joint 6.163158e-04

Joint ci ratio: 1.141287e-01	ci left: 5.820425e-04	ci right 6.529937e-04	k: 1178	n:1910000
Cons ci ratio: 8.304843e-03	ci left: 1.040284e-01	ci right 1.048964e-01	k: 199522	n:1910000
KS ci ratio: 2.005445e-01	ci left: 1.799487e-04	ci right 2.205450e-04	k: 381	n:1910000
MTTP   1910000 perm   1792 sec   (1066 perm/sec)   p_kst 1.994764e-04   p_cons 1.044618e-01   p_joint 6.167539e-04

Joint ci ratio: 1.136955e-01	ci left: 5.835650e-04	ci right 6.544136e-04	k: 1187	n:1920000
Cons ci ratio: 8.281381e-03	ci left: 1.040702e-01	ci right 1.049362e-01	k: 200645	n:1920000
KS ci ratio: 2.000216e-01	ci left: 1.800009e-04	ci right 2.204901e-04	k: 383	n:1920000
MTTP   1920000 perm   1809 sec   (1061 perm/sec)   p_kst 1.994792e-04   p_cons 1.045026e-01   p_joint 6.182292e-04

Joint ci ratio: 1.134570e-01	ci left: 5.830584e-04	ci right 6.536871e-04	k: 1192	n:1930000
Cons ci ratio: 8.259762e-03	ci left: 1.040744e-01	ci right 1.049381e-01	k: 201696	n:1930000
KS ci ratio: 1.997617e-01	ci left: 1.795605e-04	ci right 2.198917e-04	k: 384	n:1930000
MTTP   1930000 perm   1826 sec   (1057 perm/sec)   p_kst 1.989637e-04   p_cons 1.045057e-01   p_joint 6.176166e-04

Joint ci ratio: 1.128437e-01	ci left: 5.865644e-04	ci right 6.572081e-04	k: 1205	n:1940000
Cons ci ratio: 8.239129e-03	ci left: 1.040601e-01	ci right 1.049215e-01	k: 202711	n:1940000
KS ci ratio: 1.992449e-01	ci left: 1.796143e-04	ci right 2.198406e-04	k: 386	n:1940000
MTTP   1940000 perm   1842 sec   (1053 perm/sec)   p_kst 1.989691e-04   p_cons 1.044902e-01   p_joint 6.211340e-04

Joint ci ratio: 1.127037e-01	ci left: 5.850514e-04	ci right 6.554197e-04	k: 1208	n:1950000
Cons ci ratio: 8.217433e-03	ci left: 1.040735e-01	ci right 1.049328e-01	k: 203780	n:1950000
KS ci ratio: 1.987320e-01	ci left: 1.796678e-04	ci right 2.197899e-04	k: 388	n:1950000
MTTP   1950000 perm   1859 sec   (1049 perm/sec)   p_kst 1.989744e-04   p_cons 1.045026e-01   p_joint 6.194872e-04

Joint ci ratio: 1.129378e-01	ci left: 5.795874e-04	ci right 6.494529e-04	k: 1203	n:1960000
Cons ci ratio: 8.197025e-03	ci left: 1.040614e-01	ci right 1.049184e-01	k: 204799	n:1960000
KS ci ratio: 1.987321e-01	ci left: 1.787511e-04	ci right 2.186685e-04	k: 388	n:1960000
MTTP   1960000 perm   1876 sec   (1045 perm/sec)   p_kst 1.979592e-04   p_cons 1.044893e-01   p_joint 6.137755e-04

Joint ci ratio: 1.128442e-01	ci left: 5.776318e-04	ci right 6.472001e-04	k: 1205	n:1970000
Cons ci ratio: 8.175748e-03	ci left: 1.040726e-01	ci right 1.049275e-01	k: 205864	n:1970000
KS ci ratio: 1.987322e-01	ci left: 1.778437e-04	ci right 2.175586e-04	k: 388	n:1970000
MTTP   1970000 perm   1893 sec   (1041 perm/sec)   p_kst 1.969543e-04   p_cons 1.044995e-01   p_joint 6.116751e-04

Joint ci ratio: 1.139367e-01	ci left: 5.634275e-04	ci right 6.319862e-04	k: 1182	n:1980000
Cons ci ratio: 8.155076e-03	ci left: 1.040737e-01	ci right 1.049264e-01	k: 206909	n:1980000
KS ci ratio: 1.984773e-01	ci left: 1.774255e-04	ci right 2.169899e-04	k: 389	n:1980000
MTTP   1980000 perm   1910 sec   (1037 perm/sec)   p_kst 1.964646e-04   p_cons 1.044995e-01   p_joint 5.969697e-04

Joint ci ratio: 1.135057e-01	ci left: 5.649902e-04	ci right 6.334616e-04	k: 1191	n:1990000
Cons ci ratio: 8.134080e-03	ci left: 1.040858e-01	ci right 1.049364e-01	k: 207976	n:1990000
KS ci ratio: 1.977183e-01	ci left: 1.779666e-04	ci right 2.174817e-04	k: 392	n:1990000
MTTP   1990000 perm   1927 sec   (1033 perm/sec)   p_kst 1.969849e-04   p_cons 1.045106e-01   p_joint 5.984925e-04

Joint ci ratio: 1.131739e-01	ci left: 5.655661e-04	ci right 6.338934e-04	k: 1198	n:2000000
Cons ci ratio: 8.114350e-03	ci left: 1.040724e-01	ci right 1.049208e-01	k: 208992	n:2000000
KS ci ratio: 1.969679e-01	ci left: 1.785027e-04	ci right 2.179683e-04	k: 395	n:2000000
MTTP   2000000 perm   1944 sec   (1029 perm/sec)   p_kst 1.975000e-04   p_cons 1.044960e-01   p_joint 5.990000e-04

Joint ci ratio: 1.128449e-01	ci left: 5.661365e-04	ci right 6.343207e-04	k: 1205	n:2010000
Cons ci ratio: 8.094096e-03	ci left: 1.040744e-01	ci right 1.049207e-01	k: 210039	n:2010000
KS ci ratio: 1.962259e-01	ci left: 1.790337e-04	ci right 2.184498e-04	k: 398	n:2010000
MTTP   2010000 perm   1961 sec   (1025 perm/sec)   p_kst 1.980100e-04   p_cons 1.044970e-01   p_joint 5.995025e-04

Joint ci ratio: 1.127983e-01	ci left: 5.638149e-04	ci right 6.316896e-04	k: 1206	n:2020000
Cons ci ratio: 8.074442e-03	ci left: 1.040661e-01	ci right 1.049103e-01	k: 211065	n:2020000
KS ci ratio: 1.954923e-01	ci left: 1.795597e-04	ci right 2.189263e-04	k: 401	n:2020000
MTTP   2020000 perm   1978 sec   (1021 perm/sec)   p_kst 1.985149e-04   p_cons 1.044876e-01   p_joint 5.970297e-04

Joint ci ratio: 1.124726e-01	ci left: 5.643886e-04	ci right 6.321232e-04	k: 1213	n:2030000
Cons ci ratio: 8.054570e-03	ci left: 1.040662e-01	ci right 1.049083e-01	k: 212108	n:2030000
KS ci ratio: 1.942877e-01	ci left: 1.810181e-04	ci right 2.204309e-04	k: 406	n:2030000
MTTP   2030000 perm   1996 sec   (1017 perm/sec)   p_kst 2.000000e-04   p_cons 1.044867e-01   p_joint 5.975369e-04

Joint ci ratio: 1.121497e-01	ci left: 5.649570e-04	ci right 6.325522e-04	k: 1220	n:2040000
Cons ci ratio: 8.035496e-03	ci left: 1.040512e-01	ci right 1.048911e-01	k: 213120	n:2040000
KS ci ratio: 1.938120e-01	ci left: 1.810635e-04	ci right 2.203783e-04	k: 408	n:2040000
MTTP   2040000 perm   2013 sec   (1013 perm/sec)   p_kst 2.000000e-04   p_cons 1.044706e-01   p_joint 5.980392e-04

Joint ci ratio: 1.118296e-01	ci left: 5.655201e-04	ci right 6.329768e-04	k: 1227	n:2050000
Cons ci ratio: 8.014655e-03	ci left: 1.040806e-01	ci right 1.049186e-01	k: 214223	n:2050000
KS ci ratio: 1.928711e-01	ci left: 1.820371e-04	ci right 2.213488e-04	k: 412	n:2050000
MTTP   2050000 perm   2031 sec   (1009 perm/sec)   p_kst 2.009756e-04   p_cons 1.044990e-01   p_joint 5.985366e-04

Joint ci ratio: 1.117842e-01	ci left: 5.632467e-04	ci right 6.304032e-04	k: 1228	n:2060000
Cons ci ratio: 7.995676e-03	ci left: 1.040700e-01	ci right 1.049059e-01	k: 215244	n:2060000
KS ci ratio: 1.926381e-01	ci left: 1.816154e-04	ci right 2.207832e-04	k: 413	n:2060000
MTTP   2060000 perm   2049 sec   (1005 perm/sec)   p_kst 2.004854e-04   p_cons 1.044874e-01   p_joint 5.961165e-04

Joint ci ratio: 1.115123e-01	ci left: 5.633433e-04	ci right 6.303372e-04	k: 1234	n:2070000
Cons ci ratio: 7.975966e-03	ci left: 1.040797e-01	ci right 1.049137e-01	k: 216307	n:2070000
KS ci ratio: 1.917141e-01	ci left: 1.825774e-04	ci right 2.217418e-04	k: 417	n:2070000
MTTP   2070000 perm   2066 sec   (1002 perm/sec)   p_kst 2.014493e-04   p_cons 1.044961e-01   p_joint 5.961353e-04

Joint ci ratio: 1.110635e-01	ci left: 5.653088e-04	ci right 6.322482e-04	k: 1244	n:2080000
Cons ci ratio: 7.956913e-03	ci left: 1.040774e-01	ci right 1.049093e-01	k: 217345	n:2080000
KS ci ratio: 1.908032e-01	ci left: 1.835307e-04	ci right 2.226907e-04	k: 421	n:2080000
MTTP   2080000 perm   2085 sec   (998 perm/sec)   p_kst 2.024038e-04   p_cons 1.044928e-01   p_joint 5.980769e-04

Joint ci ratio: 1.109300e-01	ci left: 5.639995e-04	ci right 6.306983e-04	k: 1247	n:2090000
Cons ci ratio: 7.937772e-03	ci left: 1.040803e-01	ci right 1.049102e-01	k: 218394	n:2090000
KS ci ratio: 1.908033e-01	ci left: 1.826525e-04	ci right 2.216253e-04	k: 421	n:2090000
MTTP   2090000 perm   2103 sec   (994 perm/sec)   p_kst 2.014354e-04   p_cons 1.044947e-01   p_joint 5.966507e-04

Joint ci ratio: 1.121966e-01	ci left: 5.483522e-04	ci right 6.139901e-04	k: 1219	n:2100000
Cons ci ratio: 7.917378e-03	ci left: 1.041160e-01	ci right 1.049441e-01	k: 219512	n:2100000
KS ci ratio: 1.903528e-01	ci left: 1.826897e-04	ci right 2.215677e-04	k: 423	n:2100000
MTTP   2100000 perm   2121 sec   (990 perm/sec)   p_kst 2.014286e-04   p_cons 1.045295e-01   p_joint 5.804762e-04

Joint ci ratio: 1.120132e-01	ci left: 5.475960e-04	ci right 6.130291e-04	k: 1223	n:2110000
Cons ci ratio: 7.899100e-03	ci left: 1.041051e-01	ci right 1.049311e-01	k: 220532	n:2110000
KS ci ratio: 1.903529e-01	ci left: 1.818239e-04	ci right 2.205176e-04	k: 423	n:2110000
MTTP   2110000 perm   2139 sec   (986 perm/sec)   p_kst 2.004739e-04   p_cons 1.045175e-01   p_joint 5.796209e-04

Joint ci ratio: 1.116489e-01	ci left: 5.486810e-04	ci right 6.140165e-04	k: 1231	n:2120000
Cons ci ratio: 7.879995e-03	ci left: 1.041168e-01	ci right 1.049409e-01	k: 221600	n:2120000
KS ci ratio: 1.894612e-01	ci left: 1.827633e-04	ci right 2.214538e-04	k: 427	n:2120000
MTTP   2120000 perm   2157 sec   (983 perm/sec)   p_kst 2.014151e-04   p_cons 1.045283e-01   p_joint 5.806604e-04

Joint ci ratio: 1.111984e-01	ci left: 5.506691e-04	ci right 6.159594e-04	k: 1241	n:2130000
Cons ci ratio: 7.862467e-03	ci left: 1.040942e-01	ci right 1.049163e-01	k: 222595	n:2130000
KS ci ratio: 1.883640e-01	ci left: 1.841417e-04	ci right 2.228724e-04	k: 432	n:2130000
MTTP   2130000 perm   2175 sec   (979 perm/sec)   p_kst 2.028169e-04   p_cons 1.045047e-01   p_joint 5.826291e-04

Joint ci ratio: 1.109753e-01	ci left: 5.503674e-04	ci right 6.154824e-04	k: 1246	n:2140000
Cons ci ratio: 7.842980e-03	ci left: 1.041212e-01	ci right 1.049415e-01	k: 223696	n:2140000
KS ci ratio: 1.872856e-01	ci left: 1.855078e-04	ci right 2.242771e-04	k: 437	n:2140000
MTTP   2140000 perm   2194 sec   (976 perm/sec)   p_kst 2.042056e-04   p_cons 1.045308e-01   p_joint 5.822430e-04

Joint ci ratio: 1.107092e-01	ci left: 5.505209e-04	ci right 6.154877e-04	k: 1252	n:2150000
Cons ci ratio: 7.826242e-03	ci left: 1.040858e-01	ci right 1.049041e-01	k: 224663	n:2150000
KS ci ratio: 1.868595e-01	ci left: 1.855316e-04	ci right 2.242077e-04	k: 439	n:2150000
MTTP   2150000 perm   2212 sec   (972 perm/sec)   p_kst 2.041860e-04   p_cons 1.044944e-01   p_joint 5.823256e-04

Joint ci ratio: 1.121056e-01	ci left: 5.340200e-04	ci right 5.978869e-04	k: 1221	n:2160000
Cons ci ratio: 7.806810e-03	ci left: 1.041178e-01	ci right 1.049342e-01	k: 225775	n:2160000
KS ci ratio: 1.868596e-01	ci left: 1.846727e-04	ci right 2.231697e-04	k: 439	n:2160000
MTTP   2160000 perm   2230 sec   (968 perm/sec)   p_kst 2.032407e-04   p_cons 1.045255e-01   p_joint 5.652778e-04

Joint ci ratio: 1.158666e-01	ci left: 4.966383e-04	ci right 5.581636e-04	k: 1143	n:2170000
Cons ci ratio: 7.789343e-03	ci left: 1.041057e-01	ci right 1.049202e-01	k: 226792	n:2170000
KS ci ratio: 1.868597e-01	ci left: 1.838217e-04	ci right 2.221413e-04	k: 439	n:2170000
MTTP   2170000 perm   2249 sec   (965 perm/sec)   p_kst 2.023041e-04   p_cons 1.045124e-01   p_joint 5.267281e-04

Joint ci ratio: 1.155137e-01	ci left: 4.974783e-04	ci right 5.589071e-04	k: 1150	n:2180000
Cons ci ratio: 7.770755e-03	ci left: 1.041235e-01	ci right 1.049362e-01	k: 227874	n:2180000
KS ci ratio: 1.864364e-01	ci left: 1.838530e-04	ci right 2.220825e-04	k: 441	n:2180000
MTTP   2180000 perm   2268 sec   (961 perm/sec)   p_kst 2.022936e-04   p_cons 1.045294e-01   p_joint 5.275229e-04

Joint ci ratio: 1.152637e-01	ci left: 4.974239e-04	ci right 5.587040e-04	k: 1155	n:2190000
Cons ci ratio: 7.752621e-03	ci left: 1.041334e-01	ci right 1.049443e-01	k: 228939	n:2190000
KS ci ratio: 1.858069e-01	ci left: 1.843195e-04	ci right 2.225021e-04	k: 444	n:2190000
MTTP   2190000 perm   2287 sec   (958 perm/sec)   p_kst 2.027397e-04   p_cons 1.045384e-01   p_joint 5.273973e-04

Joint ci ratio: 1.148175e-01	ci left: 4.991361e-04	ci right 5.603729e-04	k: 1164	n:2200000
Cons ci ratio: 7.734369e-03	ci left: 1.041492e-01	ci right 1.049582e-01	k: 230017	n:2200000
KS ci ratio: 1.855985e-01	ci left: 1.839151e-04	ci right 2.219663e-04	k: 445	n:2200000
MTTP   2200000 perm   2305 sec   (954 perm/sec)   p_kst 2.022727e-04   p_cons 1.045532e-01   p_joint 5.290909e-04

Joint ci ratio: 1.144740e-01	ci left: 4.999542e-04	ci right 5.610955e-04	k: 1171	n:2210000
Cons ci ratio: 7.717606e-03	ci left: 1.041318e-01	ci right 1.049390e-01	k: 231022	n:2210000
KS ci ratio: 1.847717e-01	ci left: 1.848090e-04	ci right 2.228557e-04	k: 449	n:2210000
MTTP   2210000 perm   2324 sec   (951 perm/sec)   p_kst 2.031674e-04   p_cons 1.045348e-01   p_joint 5.298643e-04

Joint ci ratio: 1.141821e-01	ci left: 5.003275e-04	ci right 5.613480e-04	k: 1177	n:2220000
Cons ci ratio: 7.699933e-03	ci left: 1.041393e-01	ci right 1.049447e-01	k: 232082	n:2220000
KS ci ratio: 1.839559e-01	ci left: 1.856952e-04	ci right 2.237367e-04	k: 453	n:2220000
MTTP   2220000 perm   2343 sec   (948 perm/sec)   p_kst 2.040541e-04   p_cons 1.045414e-01   p_joint 5.301802e-04

Joint ci ratio: 1.140854e-01	ci left: 4.989551e-04	ci right 5.597532e-04	k: 1179	n:2230000
Cons ci ratio: 7.681296e-03	ci left: 1.041731e-01	ci right 1.049768e-01	k: 233201	n:2230000
KS ci ratio: 1.837536e-01	ci left: 1.852903e-04	ci right 2.232025e-04	k: 454	n:2230000
MTTP   2230000 perm   2362 sec   (944 perm/sec)   p_kst 2.035874e-04   p_cons 1.045744e-01   p_joint 5.286996e-04

Joint ci ratio: 1.137485e-01	ci left: 4.997636e-04	ci right 5.604683e-04	k: 1186	n:2240000
Cons ci ratio: 7.664309e-03	ci left: 1.041697e-01	ci right 1.049715e-01	k: 234237	n:2240000
KS ci ratio: 1.833511e-01	ci left: 1.853149e-04	ci right 2.231399e-04	k: 456	n:2240000
MTTP   2240000 perm   2381 sec   (941 perm/sec)   p_kst 2.035714e-04   p_cons 1.045701e-01   p_joint 5.294643e-04

Joint ci ratio: 1.135573e-01	ci left: 4.992697e-04	ci right 5.598056e-04	k: 1190	n:2250000
Cons ci ratio: 7.647797e-03	ci left: 1.041574e-01	ci right 1.049574e-01	k: 235253	n:2250000
KS ci ratio: 1.829512e-01	ci left: 1.853394e-04	ci right 2.230777e-04	k: 458	n:2250000
MTTP   2250000 perm   2400 sec   (938 perm/sec)   p_kst 2.035556e-04   p_cons 1.045569e-01   p_joint 5.288889e-04

Joint ci ratio: 1.133671e-01	ci left: 4.987802e-04	ci right 5.591488e-04	k: 1194	n:2260000
Cons ci ratio: 7.631194e-03	ci left: 1.041500e-01	ci right 1.049483e-01	k: 236280	n:2260000
KS ci ratio: 1.827523e-01	ci left: 1.849415e-04	ci right 2.225534e-04	k: 459	n:2260000
MTTP   2260000 perm   2419 sec   (934 perm/sec)   p_kst 2.030973e-04   p_cons 1.045487e-01   p_joint 5.283186e-04

Joint ci ratio: 1.131307e-01	ci left: 4.987232e-04	ci right 5.589506e-04	k: 1199	n:2270000
Cons ci ratio: 7.615289e-03	ci left: 1.041283e-01	ci right 1.049247e-01	k: 237274	n:2270000
KS ci ratio: 1.821592e-01	ci left: 1.853881e-04	ci right 2.229548e-04	k: 462	n:2270000
MTTP   2270000 perm   2439 sec   (931 perm/sec)   p_kst 2.035242e-04   p_cons 1.045260e-01   p_joint 5.281938e-04

Joint ci ratio: 1.129427e-01	ci left: 4.982406e-04	ci right 5.583030e-04	k: 1203	n:2280000
Cons ci ratio: 7.599733e-03	ci left: 1.041006e-01	ci right 1.048952e-01	k: 238254	n:2280000
KS ci ratio: 1.819629e-01	ci left: 1.849936e-04	ci right 2.224355e-04	k: 463	n:2280000
MTTP   2280000 perm   2458 sec   (928 perm/sec)   p_kst 2.030702e-04   p_cons 1.044974e-01   p_joint 5.276316e-04

Joint ci ratio: 1.128491e-01	ci left: 4.969135e-04	ci right 5.567630e-04	k: 1205	n:2290000
Cons ci ratio: 7.582484e-03	ci left: 1.041172e-01	ci right 1.049100e-01	k: 239335	n:2290000
KS ci ratio: 1.817672e-01	ci left: 1.846025e-04	ci right 2.219207e-04	k: 464	n:2290000
MTTP   2290000 perm   2478 sec   (924 perm/sec)   p_kst 2.026201e-04   p_cons 1.045131e-01   p_joint 5.262009e-04

Joint ci ratio: 1.126624e-01	ci left: 4.964431e-04	ci right 5.561305e-04	k: 1209	n:2300000
Cons ci ratio: 7.565528e-03	ci left: 1.041292e-01	ci right 1.049204e-01	k: 240406	n:2300000
KS ci ratio: 1.817672e-01	ci left: 1.837999e-04	ci right 2.209559e-04	k: 464	n:2300000
MTTP   2300000 perm   2497 sec   (921 perm/sec)   p_kst 2.017391e-04   p_cons 1.045243e-01   p_joint 5.256522e-04

Joint ci ratio: 1.124304e-01	ci left: 4.963976e-04	ci right 5.559484e-04	k: 1214	n:2310000
Cons ci ratio: 7.549104e-03	ci left: 1.041309e-01	ci right 1.049203e-01	k: 241453	n:2310000
KS ci ratio: 1.815721e-01	ci left: 1.834174e-04	ci right 2.204519e-04	k: 465	n:2310000
MTTP   2310000 perm   2516 sec   (918 perm/sec)   p_kst 2.012987e-04   p_cons 1.045251e-01   p_joint 5.255411e-04

Joint ci ratio: 1.121078e-01	ci left: 4.971905e-04	ci right 5.566540e-04	k: 1221	n:2320000
Cons ci ratio: 7.532335e-03	ci left: 1.041436e-01	ci right 1.049315e-01	k: 242526	n:2320000
KS ci ratio: 1.811837e-01	ci left: 1.834498e-04	ci right 2.204029e-04	k: 467	n:2320000
MTTP   2320000 perm   2536 sec   (915 perm/sec)   p_kst 2.012931e-04   p_cons 1.045371e-01   p_joint 5.262931e-04

Joint ci ratio: 1.119705e-01	ci left: 4.963081e-04	ci right 5.555886e-04	k: 1224	n:2330000
Cons ci ratio: 7.517195e-03	ci left: 1.041186e-01	ci right 1.049047e-01	k: 243511	n:2330000
KS ci ratio: 1.807978e-01	ci left: 1.834819e-04	ci right 2.203542e-04	k: 469	n:2330000
MTTP   2330000 perm   2555 sec   (912 perm/sec)   p_kst 2.012876e-04   p_cons 1.045112e-01   p_joint 5.253219e-04

Joint ci ratio: 1.116973e-01	ci left: 4.966795e-04	ci right 5.558500e-04	k: 1230	n:2340000
Cons ci ratio: 7.499884e-03	ci left: 1.041501e-01	ci right 1.049346e-01	k: 244628	n:2340000
KS ci ratio: 1.804144e-01	ci left: 1.835139e-04	ci right 2.203058e-04	k: 471	n:2340000
MTTP   2340000 perm   2575 sec   (909 perm/sec)   p_kst 2.012821e-04   p_cons 1.045419e-01   p_joint 5.256410e-04

Joint ci ratio: 1.114261e-01	ci left: 4.970479e-04	ci right 5.561091e-04	k: 1236	n:2350000
Cons ci ratio: 7.482574e-03	ci left: 1.041844e-01	ci right 1.049673e-01	k: 245752	n:2350000
KS ci ratio: 1.804145e-01	ci left: 1.827330e-04	ci right 2.193683e-04	k: 471	n:2350000
MTTP   2350000 perm   2595 sec   (906 perm/sec)   p_kst 2.004255e-04   p_cons 1.045753e-01   p_joint 5.259574e-04

Joint ci ratio: 1.112912e-01	ci left: 4.961775e-04	ci right 5.550593e-04	k: 1239	n:2360000
Cons ci ratio: 7.467308e-03	ci left: 1.041701e-01	ci right 1.049513e-01	k: 246762	n:2360000
KS ci ratio: 1.796547e-01	ci left: 1.835772e-04	ci right 2.202100e-04	k: 475	n:2360000
MTTP   2360000 perm   2615 sec   (903 perm/sec)   p_kst 2.012712e-04   p_cons 1.045602e-01   p_joint 5.250000e-04

Joint ci ratio: 1.112017e-01	ci left: 4.949043e-04	ci right 5.535847e-04	k: 1241	n:2370000
Cons ci ratio: 7.452539e-03	ci left: 1.041458e-01	ci right 1.049252e-01	k: 247748	n:2370000
KS ci ratio: 1.792785e-01	ci left: 1.836086e-04	ci right 2.201626e-04	k: 477	n:2370000
MTTP   2370000 perm   2635 sec   (899 perm/sec)   p_kst 2.012658e-04   p_cons 1.045350e-01   p_joint 5.236287e-04

Joint ci ratio: 1.109785e-01	ci left: 4.948674e-04	ci right 5.534179e-04	k: 1246	n:2380000
Cons ci ratio: 7.436655e-03	ci left: 1.041519e-01	ci right 1.049297e-01	k: 248806	n:2380000
KS ci ratio: 1.789046e-01	ci left: 1.836398e-04	ci right 2.201155e-04	k: 479	n:2380000
MTTP   2380000 perm   2655 sec   (896 perm/sec)   p_kst 2.012605e-04   p_cons 1.045403e-01   p_joint 5.235294e-04

Joint ci ratio: 1.108897e-01	ci left: 4.936104e-04	ci right 5.519624e-04	k: 1248	n:2390000
Cons ci ratio: 7.421402e-03	ci left: 1.041446e-01	ci right 1.049208e-01	k: 249832	n:2390000
KS ci ratio: 1.787186e-01	ci left: 1.832711e-04	ci right 2.196316e-04	k: 480	n:2390000
MTTP   2390000 perm   2675 sec   (893 perm/sec)   p_kst 2.008368e-04   p_cons 1.045322e-01   p_joint 5.221757e-04

Joint ci ratio: 1.106243e-01	ci left: 4.939844e-04	ci right 5.522317e-04	k: 1254	n:2400000
Cons ci ratio: 7.405749e-03	ci left: 1.041499e-01	ci right 1.049244e-01	k: 250888	n:2400000
KS ci ratio: 1.781638e-01	ci left: 1.837017e-04	ci right 2.200223e-04	k: 483	n:2400000
MTTP   2400000 perm   2695 sec   (890 perm/sec)   p_kst 2.012500e-04   p_cons 1.045367e-01   p_joint 5.225000e-04

Joint ci ratio: 1.103170e-01	ci left: 4.947590e-04	ci right 5.529251e-04	k: 1261	n:2410000
Cons ci ratio: 7.389130e-03	ci left: 1.041820e-01	ci right 1.049551e-01	k: 252009	n:2410000
KS ci ratio: 1.777968e-01	ci left: 1.837323e-04	ci right 2.199761e-04	k: 485	n:2410000
MTTP   2410000 perm   2715 sec   (888 perm/sec)   p_kst 2.012448e-04   p_cons 1.045680e-01   p_joint 5.232365e-04

Joint ci ratio: 1.100991e-01	ci left: 4.947237e-04	ci right 5.527633e-04	k: 1266	n:2420000
Cons ci ratio: 7.374086e-03	ci left: 1.041767e-01	ci right 1.049482e-01	k: 253040	n:2420000
KS ci ratio: 1.774321e-01	ci left: 1.837628e-04	ci right 2.199303e-04	k: 487	n:2420000
MTTP   2420000 perm   2735 sec   (885 perm/sec)   p_kst 2.012397e-04   p_cons 1.045620e-01   p_joint 5.231405e-04

Joint ci ratio: 1.098825e-01	ci left: 4.946888e-04	ci right 5.526028e-04	k: 1271	n:2430000
Cons ci ratio: 7.359328e-03	ci left: 1.041666e-01	ci right 1.049364e-01	k: 254059	n:2430000
KS ci ratio: 1.768892e-01	ci left: 1.841864e-04	ci right 2.203145e-04	k: 490	n:2430000
MTTP   2430000 perm   2755 sec   (882 perm/sec)   p_kst 2.016461e-04   p_cons 1.045510e-01   p_joint 5.230453e-04

Joint ci ratio: 1.112473e-01	ci left: 4.803076e-04	ci right 5.372821e-04	k: 1240	n:2440000
Cons ci ratio: 7.343967e-03	ci left: 1.041741e-01	ci right 1.049424e-01	k: 255121	n:2440000
KS ci ratio: 1.765300e-01	ci left: 1.842150e-04	ci right 2.202674e-04	k: 492	n:2440000
MTTP   2440000 perm   2776 sec   (879 perm/sec)   p_kst 2.016393e-04   p_cons 1.045578e-01   p_joint 5.081967e-04

Joint ci ratio: 1.110239e-01	ci left: 4.803313e-04	ci right 5.371867e-04	k: 1245	n:2450000
Cons ci ratio: 7.328894e-03	ci left: 1.041767e-01	ci right 1.049434e-01	k: 256171	n:2450000
KS ci ratio: 1.758182e-01	ci left: 1.850237e-04	ci right 2.210729e-04	k: 496	n:2450000
MTTP   2450000 perm   2796 sec   (876 perm/sec)   p_kst 2.024490e-04   p_cons 1.045596e-01   p_joint 5.081633e-04

Joint ci ratio: 1.109795e-01	ci left: 4.787739e-04	ci right 5.354208e-04	k: 1246	n:2460000
Cons ci ratio: 7.313198e-03	ci left: 1.041975e-01	ci right 1.049627e-01	k: 257266	n:2460000
KS ci ratio: 1.752899e-01	ci left: 1.854375e-04	ci right 2.214473e-04	k: 499	n:2460000
MTTP   2460000 perm   2817 sec   (873 perm/sec)   p_kst 2.028455e-04   p_cons 1.045797e-01   p_joint 5.065041e-04

Joint ci ratio: 1.121096e-01	ci left: 4.669963e-04	ci right 5.228496e-04	k: 1221	n:2470000
Cons ci ratio: 7.297650e-03	ci left: 1.042170e-01	ci right 1.049807e-01	k: 258358	n:2470000
KS ci ratio: 1.749403e-01	ci left: 1.854610e-04	ci right 2.213959e-04	k: 501	n:2470000
MTTP   2470000 perm   2838 sec   (870 perm/sec)   p_kst 2.028340e-04   p_cons 1.045984e-01   p_joint 4.943320e-04

Joint ci ratio: 1.137514e-01	ci left: 4.513988e-04	ci right 5.062302e-04	k: 1186	n:2480000
Cons ci ratio: 7.281747e-03	ci left: 1.042480e-01	ci right 1.050102e-01	k: 259479	n:2480000
KS ci ratio: 1.742474e-01	ci left: 1.862556e-04	ci right 2.221865e-04	k: 505	n:2480000
MTTP   2480000 perm   2858 sec   (868 perm/sec)   p_kst 2.036290e-04   p_cons 1.046286e-01   p_joint 4.782258e-04

Joint ci ratio: 1.134649e-01	ci left: 4.519271e-04	ci right 5.066752e-04	k: 1192	n:2490000
Cons ci ratio: 7.267457e-03	ci left: 1.042398e-01	ci right 1.050005e-01	k: 260503	n:2490000
KS ci ratio: 1.733928e-01	ci left: 1.874283e-04	ci right 2.233895e-04	k: 510	n:2490000
MTTP   2490000 perm   2879 sec   (865 perm/sec)   p_kst 2.048193e-04   p_cons 1.046197e-01   p_joint 4.787149e-04

Joint ci ratio: 1.131335e-01	ci left: 4.528401e-04	ci right 5.075278e-04	k: 1199	n:2500000
Cons ci ratio: 7.253081e-03	ci left: 1.042361e-01	ci right 1.049952e-01	k: 261538	n:2500000
KS ci ratio: 1.730544e-01	ci left: 1.874439e-04	ci right 2.233306e-04	k: 512	n:2500000
MTTP   2500000 perm   2900 sec   (862 perm/sec)   p_kst 2.048000e-04   p_cons 1.046152e-01   p_joint 4.796000e-04

Joint ci ratio: 1.129454e-01	ci left: 4.525845e-04	ci right 5.071445e-04	k: 1203	n:2510000
Cons ci ratio: 7.238944e-03	ci left: 1.042284e-01	ci right 1.049860e-01	k: 262563	n:2510000
KS ci ratio: 1.727181e-01	ci left: 1.874594e-04	ci right 2.232721e-04	k: 514	n:2510000
MTTP   2510000 perm   2921 sec   (859 perm/sec)   p_kst 2.047809e-04   p_cons 1.046068e-01   p_joint 4.792829e-04

Joint ci ratio: 1.151680e-01	ci left: 4.330550e-04	ci right 4.863578e-04	k: 1157	n:2520000
Cons ci ratio: 7.225134e-03	ci left: 1.042145e-01	ci right 1.049706e-01	k: 263572	n:2520000
KS ci ratio: 1.723837e-01	ci left: 1.874749e-04	ci right 2.232140e-04	k: 516	n:2520000
MTTP   2520000 perm   2942 sec   (857 perm/sec)   p_kst 2.047619e-04   p_cons 1.045921e-01   p_joint 4.591270e-04

Joint ci ratio: 1.147722e-01	ci left: 4.344145e-04	ci right 4.876884e-04	k: 1165	n:2530000
Cons ci ratio: 7.210490e-03	ci left: 1.042243e-01	ci right 1.049789e-01	k: 264641	n:2530000
KS ci ratio: 1.718857e-01	ci left: 1.878686e-04	ci right 2.235685e-04	k: 519	n:2530000
MTTP   2530000 perm   2963 sec   (854 perm/sec)   p_kst 2.051383e-04   p_cons 1.046012e-01   p_joint 4.604743e-04

Joint ci ratio: 1.144780e-01	ci left: 4.349986e-04	ci right 4.881983e-04	k: 1171	n:2540000
Cons ci ratio: 7.196025e-03	ci left: 1.042318e-01	ci right 1.049849e-01	k: 265704	n:2540000
KS ci ratio: 1.715561e-01	ci left: 1.878825e-04	ci right 2.235095e-04	k: 521	n:2540000
MTTP   2540000 perm   2984 sec   (851 perm/sec)   p_kst 2.051181e-04   p_cons 1.046079e-01   p_joint 4.610236e-04

Joint ci ratio: 1.141860e-01	ci left: 4.355784e-04	ci right 4.887039e-04	k: 1177	n:2550000
Cons ci ratio: 7.182203e-03	ci left: 1.042246e-01	ci right 1.049763e-01	k: 266730	n:2550000
KS ci ratio: 1.713920e-01	ci left: 1.875210e-04	ci right 2.230420e-04	k: 522	n:2550000
MTTP   2550000 perm   3006 sec   (848 perm/sec)   p_kst 2.047059e-04   p_cons 1.046000e-01   p_joint 4.615686e-04

Joint ci ratio: 1.146741e-01	ci left: 4.300824e-04	ci right 4.827770e-04	k: 1167	n:2560000
Cons ci ratio: 7.168581e-03	ci left: 1.042144e-01	ci right 1.049646e-01	k: 267748	n:2560000
KS ci ratio: 1.710652e-01	ci left: 1.875363e-04	ci right 2.229854e-04	k: 524	n:2560000
MTTP   2560000 perm   3027 sec   (846 perm/sec)   p_kst 2.046875e-04   p_cons 1.045891e-01   p_joint 4.558594e-04

Joint ci ratio: 1.144783e-01	ci left: 4.299208e-04	ci right 4.824995e-04	k: 1171	n:2570000
Cons ci ratio: 7.154916e-03	ci left: 1.042074e-01	ci right 1.049561e-01	k: 268774	n:2570000
KS ci ratio: 1.705785e-01	ci left: 1.879240e-04	ci right 2.233350e-04	k: 527	n:2570000
MTTP   2570000 perm   3048 sec   (843 perm/sec)   p_kst 2.050584e-04   p_cons 1.045813e-01   p_joint 4.556420e-04

Joint ci ratio: 1.143321e-01	ci left: 4.293839e-04	ci right 4.818254e-04	k: 1174	n:2580000
Cons ci ratio: 7.141462e-03	ci left: 1.041970e-01	ci right 1.049442e-01	k: 269791	n:2580000
KS ci ratio: 1.702564e-01	ci left: 1.879377e-04	ci right 2.232775e-04	k: 529	n:2580000
MTTP   2580000 perm   3070 sec   (840 perm/sec)   p_kst 2.050388e-04   p_cons 1.045702e-01   p_joint 4.550388e-04

Joint ci ratio: 1.162279e-01	ci left: 4.134771e-04	ci right 4.648707e-04	k: 1136	n:2590000
Cons ci ratio: 7.127732e-03	ci left: 1.041959e-01	ci right 1.049416e-01	k: 270832	n:2590000
KS ci ratio: 1.700960e-01	ci left: 1.875818e-04	ci right 2.228180e-04	k: 530	n:2590000
MTTP   2590000 perm   3091 sec   (838 perm/sec)   p_kst 2.046332e-04   p_cons 1.045683e-01   p_joint 4.386100e-04

Joint ci ratio: 1.160240e-01	ci left: 4.133806e-04	ci right 4.646658e-04	k: 1140	n:2600000
Cons ci ratio: 7.114080e-03	ci left: 1.041948e-01	ci right 1.049391e-01	k: 271873	n:2600000
KS ci ratio: 1.696175e-01	ci left: 1.879651e-04	ci right 2.231639e-04	k: 533	n:2600000
MTTP   2600000 perm   3113 sec   (835 perm/sec)   p_kst 2.050000e-04   p_cons 1.045665e-01   p_joint 4.384615e-04

Joint ci ratio: 1.155690e-01	ci left: 4.151452e-04	ci right 4.664336e-04	k: 1149	n:2610000
Cons ci ratio: 7.100753e-03	ci left: 1.041873e-01	ci right 1.049301e-01	k: 272897	n:2610000
KS ci ratio: 1.688289e-01	ci left: 1.890795e-04	ci right 2.243056e-04	k: 538	n:2610000
MTTP   2610000 perm   3135 sec   (833 perm/sec)   p_kst 2.061303e-04   p_cons 1.045582e-01   p_joint 4.402299e-04

Joint ci ratio: 1.153186e-01	ci left: 4.154139e-04	ci right 4.666168e-04	k: 1154	n:2620000
Cons ci ratio: 7.087255e-03	ci left: 1.041862e-01	ci right 1.049276e-01	k: 273938	n:2620000
KS ci ratio: 1.683610e-01	ci left: 1.894546e-04	ci right 2.246428e-04	k: 541	n:2620000
MTTP   2620000 perm   3157 sec   (830 perm/sec)   p_kst 2.064885e-04   p_cons 1.045565e-01   p_joint 4.404580e-04

Joint ci ratio: 1.158720e-01	ci left: 4.097728e-04	ci right 4.605393e-04	k: 1143	n:2630000
Cons ci ratio: 7.073619e-03	ci left: 1.041909e-01	ci right 1.049309e-01	k: 274994	n:2630000
KS ci ratio: 1.680512e-01	ci left: 1.894626e-04	ci right 2.245810e-04	k: 543	n:2630000
MTTP   2630000 perm   3179 sec   (827 perm/sec)   p_kst 2.064639e-04   p_cons 1.045605e-01   p_joint 4.346008e-04

Joint ci ratio: 1.156700e-01	ci left: 4.096919e-04	ci right 4.603538e-04	k: 1147	n:2640000
Cons ci ratio: 7.059875e-03	ci left: 1.042004e-01	ci right 1.049391e-01	k: 276063	n:2640000
KS ci ratio: 1.677431e-01	ci left: 1.894707e-04	ci right 2.245197e-04	k: 545	n:2640000
MTTP   2640000 perm   3201 sec   (825 perm/sec)   p_kst 2.064394e-04   p_cons 1.045693e-01   p_joint 4.344697e-04

Joint ci ratio: 1.153189e-01	ci left: 4.107111e-04	ci right 4.613344e-04	k: 1154	n:2650000
Cons ci ratio: 7.046396e-03	ci left: 1.042050e-01	ci right 1.049423e-01	k: 277119	n:2650000
KS ci ratio: 1.666779e-01	ci left: 1.912867e-04	ci right 2.264244e-04	k: 552	n:2650000
MTTP   2650000 perm   3223 sec   (822 perm/sec)   p_kst 2.083019e-04   p_cons 1.045732e-01   p_joint 4.354717e-04

Joint ci ratio: 1.151694e-01	ci left: 4.102623e-04	ci right 4.607604e-04	k: 1157	n:2660000
Cons ci ratio: 7.032386e-03	ci left: 1.042257e-01	ci right 1.049616e-01	k: 278218	n:2660000
KS ci ratio: 1.666780e-01	ci left: 1.905676e-04	ci right 2.255732e-04	k: 552	n:2660000
MTTP   2660000 perm   3245 sec   (820 perm/sec)   p_kst 2.075188e-04   p_cons 1.045932e-01   p_joint 4.349624e-04

Joint ci ratio: 1.207202e-01	ci left: 3.709225e-04	ci right 4.189360e-04	k: 1053	n:2670000
Cons ci ratio: 7.019611e-03	ci left: 1.042156e-01	ci right 1.049501e-01	k: 279235	n:2670000
KS ci ratio: 1.663774e-01	ci left: 1.905717e-04	ci right 2.255086e-04	k: 554	n:2670000
MTTP   2670000 perm   3268 sec   (817 perm/sec)   p_kst 2.074906e-04   p_cons 1.045824e-01   p_joint 3.943820e-04

Joint ci ratio: 1.204918e-01	ci left: 3.709860e-04	ci right 4.189103e-04	k: 1057	n:2680000
Cons ci ratio: 7.006276e-03	ci left: 1.042223e-01	ci right 1.049554e-01	k: 280297	n:2680000
KS ci ratio: 1.663775e-01	ci left: 1.898606e-04	ci right 2.246672e-04	k: 554	n:2680000
MTTP   2680000 perm   3290 sec   (815 perm/sec)   p_kst 2.067164e-04   p_cons 1.045884e-01   p_joint 3.944030e-04

Joint ci ratio: 1.217650e-01	ci left: 3.616761e-04	ci right 4.089270e-04	k: 1035	n:2690000
Cons ci ratio: 6.992893e-03	ci left: 1.042323e-01	ci right 1.049641e-01	k: 281368	n:2690000
KS ci ratio: 1.653379e-01	ci left: 1.916490e-04	ci right 2.265421e-04	k: 561	n:2690000
MTTP   2690000 perm   3312 sec   (812 perm/sec)   p_kst 2.085502e-04   p_cons 1.045978e-01   p_joint 3.847584e-04

Joint ci ratio: 1.215891e-01	ci left: 3.614138e-04	ci right 4.085574e-04	k: 1038	n:2700000
Cons ci ratio: 6.980165e-03	ci left: 1.042267e-01	ci right 1.049571e-01	k: 282397	n:2700000
KS ci ratio: 1.650445e-01	ci left: 1.916494e-04	ci right 2.264744e-04	k: 563	n:2700000
MTTP   2700000 perm   3335 sec   (810 perm/sec)   p_kst 2.085185e-04   p_cons 1.045915e-01   p_joint 3.844444e-04

Joint ci ratio: 1.210658e-01	ci left: 3.633005e-04	ci right 4.104716e-04	k: 1047	n:2710000
Cons ci ratio: 6.967082e-03	ci left: 1.042326e-01	ci right 1.049616e-01	k: 283457	n:2710000
KS ci ratio: 1.641734e-01	ci left: 1.930650e-04	ci right 2.279438e-04	k: 569	n:2710000
MTTP   2710000 perm   3358 sec   (807 perm/sec)   p_kst 2.099631e-04   p_cons 1.045967e-01   p_joint 3.863469e-04

Joint ci ratio: 1.208354e-01	ci left: 3.633909e-04	ci right 4.104775e-04	k: 1051	n:2720000
Cons ci ratio: 6.953539e-03	ci left: 1.042527e-01	ci right 1.049805e-01	k: 284556	n:2720000
KS ci ratio: 1.641735e-01	ci left: 1.923552e-04	ci right 2.271058e-04	k: 569	n:2720000
MTTP   2720000 perm   3380 sec   (805 perm/sec)   p_kst 2.091912e-04   p_cons 1.046162e-01   p_joint 3.863971e-04

Joint ci ratio: 1.207781e-01	ci left: 3.624150e-04	ci right 4.093513e-04	k: 1052	n:2730000
Cons ci ratio: 6.941242e-03	ci left: 1.042412e-01	ci right 1.049677e-01	k: 285569	n:2730000
KS ci ratio: 1.640297e-01	ci left: 1.920018e-04	ci right 2.266553e-04	k: 570	n:2730000
MTTP   2730000 perm   3403 sec   (802 perm/sec)   p_kst 2.087912e-04   p_cons 1.046040e-01   p_joint 3.853480e-04

Joint ci ratio: 1.207208e-01	ci left: 3.614463e-04	ci right 4.082333e-04	k: 1053	n:2740000
Cons ci ratio: 6.928997e-03	ci left: 1.042302e-01	ci right 1.049553e-01	k: 286583	n:2740000
KS ci ratio: 1.637432e-01	ci left: 1.920011e-04	ci right 2.265879e-04	k: 572	n:2740000
MTTP   2740000 perm   3426 sec   (800 perm/sec)   p_kst 2.087591e-04   p_cons 1.045923e-01   p_joint 3.843066e-04

Joint ci ratio: 1.282445e-01	ci left: 3.178526e-04	ci right 3.617562e-04	k: 933	n:2750000
Cons ci ratio: 6.916238e-03	ci left: 1.042349e-01	ci right 1.049587e-01	k: 287640	n:2750000
KS ci ratio: 1.634582e-01	ci left: 1.920004e-04	ci right 2.265209e-04	k: 574	n:2750000
MTTP   2750000 perm   3449 sec   (797 perm/sec)   p_kst 2.087273e-04   p_cons 1.045964e-01   p_joint 3.392727e-04

Joint ci ratio: 1.280391e-01	ci left: 3.177531e-04	ci right 3.615673e-04	k: 936	n:2760000
Cons ci ratio: 6.903390e-03	ci left: 1.042439e-01	ci right 1.049664e-01	k: 288709	n:2760000
KS ci ratio: 1.631746e-01	ci left: 1.919998e-04	ci right 2.264544e-04	k: 576	n:2760000
MTTP   2760000 perm   3472 sec   (795 perm/sec)   p_kst 2.086957e-04   p_cons 1.046047e-01   p_joint 3.391304e-04

Joint ci ratio: 1.279708e-01	ci left: 3.169554e-04	ci right 3.606345e-04	k: 937	n:2770000
Cons ci ratio: 6.890573e-03	ci left: 1.042539e-01	ci right 1.049751e-01	k: 289781	n:2770000
KS ci ratio: 1.630335e-01	ci left: 1.916529e-04	ci right 2.260127e-04	k: 577	n:2770000
MTTP   2770000 perm   3495 sec   (793 perm/sec)   p_kst 2.083032e-04   p_cons 1.046141e-01   p_joint 3.382671e-04

Joint ci ratio: 1.277667e-01	ci left: 3.168599e-04	ci right 3.604509e-04	k: 940	n:2780000
Cons ci ratio: 6.877801e-03	ci left: 1.042645e-01	ci right 1.049845e-01	k: 290855	n:2780000
KS ci ratio: 1.628926e-01	ci left: 1.913086e-04	ci right 2.255740e-04	k: 578	n:2780000
MTTP   2780000 perm   3518 sec   (790 perm/sec)   p_kst 2.079137e-04   p_cons 1.046241e-01   p_joint 3.381295e-04

Joint ci ratio: 1.275635e-01	ci left: 3.167651e-04	ci right 3.602686e-04	k: 943	n:2790000
Cons ci ratio: 6.864863e-03	ci left: 1.042816e-01	ci right 1.050003e-01	k: 291947	n:2790000
KS ci ratio: 1.624722e-01	ci left: 1.916544e-04	ci right 2.258845e-04	k: 581	n:2790000
MTTP   2790000 perm   3542 sec   (788 perm/sec)   p_kst 2.082437e-04   p_cons 1.046405e-01   p_joint 3.379928e-04

Joint ci ratio: 1.274286e-01	ci left: 3.163253e-04	ci right 3.597190e-04	k: 945	n:2800000
Cons ci ratio: 6.852468e-03	ci left: 1.042856e-01	ci right 1.050030e-01	k: 293003	n:2800000
KS ci ratio: 1.621938e-01	ci left: 1.916551e-04	ci right 2.258211e-04	k: 583	n:2800000
MTTP   2800000 perm   3565 sec   (785 perm/sec)   p_kst 2.082143e-04   p_cons 1.046439e-01   p_joint 3.375000e-04

Joint ci ratio: 1.270264e-01	ci left: 3.172669e-04	ci right 3.606420e-04	k: 951	n:2810000
Cons ci ratio: 6.839997e-03	ci left: 1.042936e-01	ci right 1.050097e-01	k: 294070	n:2810000
KS ci ratio: 1.620552e-01	ci left: 1.913145e-04	ci right 2.253877e-04	k: 584	n:2810000
MTTP   2810000 perm   3589 sec   (783 perm/sec)   p_kst 2.078292e-04   p_cons 1.046512e-01   p_joint 3.384342e-04

Joint ci ratio: 1.268932e-01	ci left: 3.168285e-04	ci right 3.600948e-04	k: 953	n:2820000
Cons ci ratio: 6.827879e-03	ci left: 1.042937e-01	ci right 1.050086e-01	k: 295115	n:2820000
KS ci ratio: 1.617788e-01	ci left: 1.913166e-04	ci right 2.253264e-04	k: 586	n:2820000
MTTP   2820000 perm   3613 sec   (781 perm/sec)   p_kst 2.078014e-04   p_cons 1.046507e-01   p_joint 3.379433e-04

Joint ci ratio: 1.264960e-01	ci left: 3.177620e-04	ci right 3.610097e-04	k: 959	n:2830000
Cons ci ratio: 6.815426e-03	ci left: 1.043047e-01	ci right 1.050184e-01	k: 296191	n:2830000
KS ci ratio: 1.616413e-01	ci left: 1.909796e-04	ci right 2.248979e-04	k: 587	n:2830000
MTTP   2830000 perm   3636 sec   (778 perm/sec)   p_kst 2.074205e-04   p_cons 1.046611e-01   p_joint 3.388693e-04

Joint ci ratio: 1.264960e-01	ci left: 3.166431e-04	ci right 3.597386e-04	k: 959	n:2840000
Cons ci ratio: 6.803168e-03	ci left: 1.043122e-01	ci right 1.050246e-01	k: 297257	n:2840000
KS ci ratio: 1.615040e-01	ci left: 1.906450e-04	ci right 2.244723e-04	k: 588	n:2840000
MTTP   2840000 perm   3660 sec   (776 perm/sec)   p_kst 2.070423e-04   p_cons 1.046680e-01   p_joint 3.376761e-04

Joint ci ratio: 1.262333e-01	ci left: 3.168912e-04	ci right 3.599242e-04	k: 963	n:2850000
Cons ci ratio: 6.791244e-03	ci left: 1.043122e-01	ci right 1.050234e-01	k: 298302	n:2850000
KS ci ratio: 1.610942e-01	ci left: 1.909862e-04	ci right 2.247798e-04	k: 591	n:2850000
MTTP   2850000 perm   3684 sec   (774 perm/sec)   p_kst 2.073684e-04   p_cons 1.046674e-01   p_joint 3.378947e-04

Joint ci ratio: 1.259722e-01	ci left: 3.171377e-04	ci right 3.601084e-04	k: 967	n:2860000
Cons ci ratio: 6.779470e-03	ci left: 1.043098e-01	ci right 1.050197e-01	k: 299340	n:2860000
KS ci ratio: 1.609584e-01	ci left: 1.906540e-04	ci right 2.243576e-04	k: 592	n:2860000
MTTP   2860000 perm   3707 sec   (771 perm/sec)   p_kst 2.069930e-04   p_cons 1.046643e-01   p_joint 3.381119e-04

Joint ci ratio: 1.259723e-01	ci left: 3.160326e-04	ci right 3.588537e-04	k: 967	n:2870000
Cons ci ratio: 6.767997e-03	ci left: 1.043008e-01	ci right 1.050094e-01	k: 300359	n:2870000
KS ci ratio: 1.608229e-01	ci left: 1.903241e-04	ci right 2.239383e-04	k: 593	n:2870000
MTTP   2870000 perm   3731 sec   (769 perm/sec)   p_kst 2.066202e-04   p_cons 1.046547e-01   p_joint 3.369338e-04

Joint ci ratio: 1.257128e-01	ci left: 3.162805e-04	ci right 3.590402e-04	k: 971	n:2880000
Cons ci ratio: 6.756456e-03	ci left: 1.042953e-01	ci right 1.050027e-01	k: 301388	n:2880000
KS ci ratio: 1.602840e-01	ci left: 1.909964e-04	ci right 2.246054e-04	k: 597	n:2880000
MTTP   2880000 perm   3755 sec   (767 perm/sec)   p_kst 2.072917e-04   p_cons 1.046486e-01   p_joint 3.371528e-04

Joint ci ratio: 1.255193e-01	ci left: 3.161915e-04	ci right 3.588685e-04	k: 974	n:2890000
Cons ci ratio: 6.744414e-03	ci left: 1.043054e-01	ci right 1.050116e-01	k: 302462	n:2890000
KS ci ratio: 1.602841e-01	ci left: 1.903355e-04	ci right 2.238282e-04	k: 597	n:2890000
MTTP   2890000 perm   3779 sec   (765 perm/sec)   p_kst 2.065744e-04   p_cons 1.046581e-01   p_joint 3.370242e-04

Joint ci ratio: 1.266947e-01	ci left: 3.090900e-04	ci right 3.512286e-04	k: 956	n:2900000
Cons ci ratio: 6.732684e-03	ci left: 1.043086e-01	ci right 1.050136e-01	k: 303516	n:2900000
KS ci ratio: 1.598835e-01	ci left: 1.906722e-04	ci right 2.241323e-04	k: 600	n:2900000
MTTP   2900000 perm   3803 sec   (762 perm/sec)   p_kst 2.068966e-04   p_cons 1.046607e-01   p_joint 3.296552e-04

Joint ci ratio: 1.264307e-01	ci left: 3.093589e-04	ci right 3.514397e-04	k: 960	n:2910000
Cons ci ratio: 6.721360e-03	ci left: 1.043021e-01	ci right 1.050059e-01	k: 304542	n:2910000
KS ci ratio: 1.597507e-01	ci left: 1.903468e-04	ci right 2.237194e-04	k: 601	n:2910000
MTTP   2910000 perm   3828 sec   (760 perm/sec)   p_kst 2.065292e-04   p_cons 1.046536e-01   p_joint 3.298969e-04

Joint ci ratio: 1.263650e-01	ci left: 3.086311e-04	ci right 3.505894e-04	k: 961	n:2920000
Cons ci ratio: 6.709112e-03	ci left: 1.043231e-01	ci right 1.050257e-01	k: 305648	n:2920000
KS ci ratio: 1.596182e-01	ci left: 1.900238e-04	ci right 2.233094e-04	k: 602	n:2920000
MTTP   2920000 perm   3852 sec   (758 perm/sec)   p_kst 2.061644e-04   p_cons 1.046740e-01   p_joint 3.291096e-04

Joint ci ratio: 1.262339e-01	ci left: 3.082388e-04	ci right 3.500970e-04	k: 963	n:2930000
Cons ci ratio: 6.697699e-03	ci left: 1.043224e-01	ci right 1.050238e-01	k: 306691	n:2930000
KS ci ratio: 1.593542e-01	ci left: 1.900306e-04	ci right 2.232571e-04	k: 604	n:2930000
MTTP   2930000 perm   3876 sec   (756 perm/sec)   p_kst 2.061433e-04   p_cons 1.046727e-01   p_joint 3.286689e-04

Joint ci ratio: 1.268941e-01	ci left: 3.038966e-04	ci right 3.453973e-04	k: 953	n:2940000
Cons ci ratio: 6.685640e-03	ci left: 1.043414e-01	ci right 1.050417e-01	k: 307792	n:2940000
KS ci ratio: 1.592227e-01	ci left: 1.897108e-04	ci right 2.228514e-04	k: 605	n:2940000
MTTP   2940000 perm   3900 sec   (754 perm/sec)   p_kst 2.057823e-04   p_cons 1.046912e-01   p_joint 3.241497e-04

Joint ci ratio: 1.268277e-01	ci left: 3.031947e-04	ci right 3.445762e-04	k: 954	n:2950000
Cons ci ratio: 6.675155e-03	ci left: 1.043180e-01	ci right 1.050170e-01	k: 308768	n:2950000
KS ci ratio: 1.590915e-01	ci left: 1.893932e-04	ci right 2.224484e-04	k: 606	n:2950000
MTTP   2950000 perm   3925 sec   (752 perm/sec)   p_kst 2.054237e-04   p_cons 1.046671e-01   p_joint 3.233898e-04

Joint ci ratio: 1.264311e-01	ci left: 3.041332e-04	ci right 3.455032e-04	k: 960	n:2960000
Cons ci ratio: 6.663626e-03	ci left: 1.043255e-01	ci right 1.050233e-01	k: 309835	n:2960000
KS ci ratio: 1.589606e-01	ci left: 1.890777e-04	ci right 2.220482e-04	k: 607	n:2960000
MTTP   2960000 perm   3949 sec   (750 perm/sec)   p_kst 2.050676e-04   p_cons 1.046740e-01   p_joint 3.243243e-04

Joint ci ratio: 1.261687e-01	ci left: 3.044134e-04	ci right 3.457293e-04	k: 964	n:2970000
Cons ci ratio: 6.652048e-03	ci left: 1.043359e-01	ci right 1.050326e-01	k: 310911	n:2970000
KS ci ratio: 1.586998e-01	ci left: 1.890877e-04	ci right 2.220007e-04	k: 609	n:2970000
MTTP   2970000 perm   3974 sec   (747 perm/sec)   p_kst 2.050505e-04   p_cons 1.046838e-01   p_joint 3.245791e-04

Joint ci ratio: 1.260382e-01	ci left: 3.040419e-04	ci right 3.452614e-04	k: 966	n:2980000
Cons ci ratio: 6.640817e-03	ci left: 1.043382e-01	ci right 1.050337e-01	k: 311963	n:2980000
KS ci ratio: 1.585699e-01	ci left: 1.887755e-04	ci right 2.216046e-04	k: 610	n:2980000
MTTP   2980000 perm   3998 sec   (745 perm/sec)   p_kst 2.046980e-04   p_cons 1.046856e-01   p_joint 3.241611e-04

Joint ci ratio: 1.259732e-01	ci left: 3.033489e-04	ci right 3.444517e-04	k: 967	n:2990000
Cons ci ratio: 6.629878e-03	ci left: 1.043338e-01	ci right 1.050282e-01	k: 312995	n:2990000
KS ci ratio: 1.584404e-01	ci left: 1.884653e-04	ci right 2.212112e-04	k: 611	n:2990000
MTTP   2990000 perm   4023 sec   (743 perm/sec)   p_kst 2.043478e-04   p_cons 1.046806e-01   p_joint 3.234114e-04

Joint ci ratio: 1.256490e-01	ci left: 3.039520e-04	ci right 3.450226e-04	k: 972	n:3000000
Cons ci ratio: 6.618628e-03	ci left: 1.043398e-01	ci right 1.050330e-01	k: 314058	n:3000000
KS ci ratio: 1.583111e-01	ci left: 1.881572e-04	ci right 2.208203e-04	k: 612	n:3000000
MTTP   3000000 perm   4047 sec   (741 perm/sec)   p_kst 2.040000e-04   p_cons 1.046860e-01   p_joint 3.240000e-04

Joint ci ratio: 1.255201e-01	ci left: 3.035858e-04	ci right 3.445616e-04	k: 974	n:3010000
Cons ci ratio: 6.607319e-03	ci left: 1.043490e-01	ci right 1.050411e-01	k: 315131	n:3010000
KS ci ratio: 1.580535e-01	ci left: 1.881702e-04	ci right 2.207774e-04	k: 614	n:3010000
MTTP   3010000 perm   4072 sec   (739 perm/sec)   p_kst 2.039867e-04   p_cons 1.046947e-01   p_joint 3.235880e-04

Joint ci ratio: 1.253916e-01	ci left: 3.032220e-04	ci right 3.441037e-04	k: 976	n:3020000
Cons ci ratio: 6.596067e-03	ci left: 1.043582e-01	ci right 1.050492e-01	k: 316204	n:3020000
KS ci ratio: 1.579252e-01	ci left: 1.878652e-04	ci right 2.203906e-04	k: 615	n:3020000
MTTP   3020000 perm   4097 sec   (737 perm/sec)   p_kst 2.036424e-04   p_cons 1.047033e-01   p_joint 3.231788e-04

Joint ci ratio: 1.250719e-01	ci left: 3.038197e-04	ci right 3.446699e-04	k: 981	n:3030000
Cons ci ratio: 6.585962e-03	ci left: 1.043364e-01	ci right 1.050261e-01	k: 317183	n:3030000
KS ci ratio: 1.577972e-01	ci left: 1.875622e-04	ci right 2.200063e-04	k: 616	n:3030000
MTTP   3030000 perm   4122 sec   (735 perm/sec)   p_kst 2.033003e-04   p_cons 1.046809e-01   p_joint 3.237624e-04

Joint ci ratio: 1.248813e-01	ci left: 3.037763e-04	ci right 3.445538e-04	k: 984	n:3040000
Cons ci ratio: 6.574969e-03	ci left: 1.043413e-01	ci right 1.050299e-01	k: 318243	n:3040000
KS ci ratio: 1.576695e-01	ci left: 1.872611e-04	ci right 2.196245e-04	k: 617	n:3040000
MTTP   3040000 perm   4147 sec   (733 perm/sec)   p_kst 2.029605e-04   p_cons 1.046852e-01   p_joint 3.236842e-04

Joint ci ratio: 1.246285e-01	ci left: 3.040509e-04	ci right 3.447765e-04	k: 988	n:3050000
Cons ci ratio: 6.564226e-03	ci left: 1.043406e-01	ci right 1.050281e-01	k: 319286	n:3050000
KS ci ratio: 1.575421e-01	ci left: 1.869621e-04	ci right 2.192452e-04	k: 618	n:3050000
MTTP   3050000 perm   4173 sec   (731 perm/sec)   p_kst 2.026230e-04   p_cons 1.046839e-01   p_joint 3.239344e-04

Joint ci ratio: 1.244399e-01	ci left: 3.040071e-04	ci right 3.446607e-04	k: 991	n:3060000
Cons ci ratio: 6.553386e-03	ci left: 1.043441e-01	ci right 1.050305e-01	k: 320342	n:3060000
KS ci ratio: 1.572882e-01	ci left: 1.869790e-04	ci right 2.192080e-04	k: 620	n:3060000
MTTP   3060000 perm   4198 sec   (729 perm/sec)   p_kst 2.026144e-04   p_cons 1.046869e-01   p_joint 3.238562e-04

Joint ci ratio: 1.240652e-01	ci left: 3.049105e-04	ci right 3.455531e-04	k: 997	n:3070000
Cons ci ratio: 6.543226e-03	ci left: 1.043298e-01	ci right 1.050150e-01	k: 321343	n:3070000
KS ci ratio: 1.569096e-01	ci left: 1.873087e-04	ci right 2.195096e-04	k: 623	n:3070000
MTTP   3070000 perm   4224 sec   (727 perm/sec)   p_kst 2.029316e-04   p_cons 1.046720e-01   p_joint 3.247557e-04

Joint ci ratio: 1.245028e-01	ci left: 3.017184e-04	ci right 3.420879e-04	k: 990	n:3080000
Cons ci ratio: 6.533045e-03	ci left: 1.043174e-01	ci right 1.050015e-01	k: 322350	n:3080000
KS ci ratio: 1.565338e-01	ci left: 1.876364e-04	ci right 2.198091e-04	k: 626	n:3080000
MTTP   3080000 perm   4249 sec   (725 perm/sec)   p_kst 2.032468e-04   p_cons 1.046591e-01   p_joint 3.214286e-04

Joint ci ratio: 1.243148e-01	ci left: 3.016826e-04	ci right 3.419819e-04	k: 993	n:3090000
Cons ci ratio: 6.522641e-03	ci left: 1.043129e-01	ci right 1.049959e-01	k: 323381	n:3090000
KS ci ratio: 1.562847e-01	ci left: 1.876511e-04	ci right 2.197703e-04	k: 628	n:3090000
MTTP   3090000 perm   4274 sec   (723 perm/sec)   p_kst 2.032362e-04   p_cons 1.046540e-01   p_joint 3.213592e-04

Joint ci ratio: 1.240033e-01	ci left: 3.022723e-04	ci right 3.425417e-04	k: 998	n:3100000
Cons ci ratio: 6.511983e-03	ci left: 1.043172e-01	ci right 1.049990e-01	k: 324439	n:3100000
KS ci ratio: 1.560368e-01	ci left: 1.876657e-04	ci right 2.197317e-04	k: 630	n:3100000
MTTP   3100000 perm   4300 sec   (721 perm/sec)   p_kst 2.032258e-04   p_cons 1.046577e-01   p_joint 3.219355e-04

Joint ci ratio: 1.238175e-01	ci left: 3.022351e-04	ci right 3.424348e-04	k: 1001	n:3110000
Cons ci ratio: 6.501389e-03	ci left: 1.043211e-01	ci right 1.050018e-01	k: 325496	n:3110000
KS ci ratio: 1.559134e-01	ci left: 1.873712e-04	ci right 2.193593e-04	k: 631	n:3110000
MTTP   3110000 perm   4326 sec   (719 perm/sec)   p_kst 2.028939e-04   p_cons 1.046611e-01   p_joint 3.218650e-04

Joint ci ratio: 1.234484e-01	ci left: 3.031300e-04	ci right 3.433197e-04	k: 1007	n:3120000
Cons ci ratio: 6.490924e-03	ci left: 1.043227e-01	ci right 1.050024e-01	k: 326546	n:3120000
KS ci ratio: 1.554222e-01	ci left: 1.880028e-04	ci right 2.199881e-04	k: 635	n:3120000
MTTP   3120000 perm   4351 sec   (717 perm/sec)   p_kst 2.035256e-04   p_cons 1.046622e-01   p_joint 3.227564e-04

Joint ci ratio: 1.232042e-01	ci left: 3.034001e-04	ci right 3.435402e-04	k: 1011	n:3130000
Cons ci ratio: 6.480620e-03	ci left: 1.043211e-01	ci right 1.049997e-01	k: 327586	n:3130000
KS ci ratio: 1.551784e-01	ci left: 1.880163e-04	ci right 2.199491e-04	k: 637	n:3130000
MTTP   3130000 perm   4377 sec   (715 perm/sec)   p_kst 2.035144e-04   p_cons 1.046601e-01   p_joint 3.230032e-04

Joint ci ratio: 1.230827e-01	ci left: 3.030511e-04	ci right 3.431027e-04	k: 1013	n:3140000
Cons ci ratio: 6.469860e-03	ci left: 1.043342e-01	ci right 1.050117e-01	k: 328672	n:3140000
KS ci ratio: 1.549358e-01	ci left: 1.880298e-04	ci right 2.199103e-04	k: 639	n:3140000
MTTP   3140000 perm   4403 sec   (713 perm/sec)   p_kst 2.035032e-04   p_cons 1.046726e-01   p_joint 3.226115e-04

Joint ci ratio: 1.229615e-01	ci left: 3.027045e-04	ci right 3.426679e-04	k: 1015	n:3150000
Cons ci ratio: 6.459294e-03	ci left: 1.043431e-01	ci right 1.050196e-01	k: 329745	n:3150000
KS ci ratio: 1.548149e-01	ci left: 1.877380e-04	ci right 2.195419e-04	k: 640	n:3150000
MTTP   3150000 perm   4429 sec   (711 perm/sec)   p_kst 2.031746e-04   p_cons 1.046810e-01   p_joint 3.222222e-04

Joint ci ratio: 1.224801e-01	ci left: 3.042005e-04	ci right 3.441929e-04	k: 1023	n:3160000
Cons ci ratio: 6.448792e-03	ci left: 1.043516e-01	ci right 1.050270e-01	k: 330817	n:3160000
KS ci ratio: 1.545740e-01	ci left: 1.877523e-04	ci right 2.195045e-04	k: 642	n:3160000
MTTP   3160000 perm   4455 sec   (709 perm/sec)   p_kst 2.031646e-04   p_cons 1.046889e-01   p_joint 3.237342e-04

Joint ci ratio: 1.223011e-01	ci left: 3.041582e-04	ci right 3.440824e-04	k: 1026	n:3170000
Cons ci ratio: 6.438741e-03	ci left: 1.043484e-01	ci right 1.050227e-01	k: 331852	n:3170000
KS ci ratio: 1.543341e-01	ci left: 1.877666e-04	ci right 2.194674e-04	k: 644	n:3170000
MTTP   3170000 perm   4481 sec   (707 perm/sec)   p_kst 2.031546e-04   p_cons 1.046852e-01   p_joint 3.236593e-04

Joint ci ratio: 1.220044e-01	ci left: 3.047261e-04	ci right 3.446207e-04	k: 1031	n:3180000
Cons ci ratio: 6.427917e-03	ci left: 1.043690e-01	ci right 1.050424e-01	k: 332963	n:3180000
KS ci ratio: 1.540954e-01	ci left: 1.877808e-04	ci right 2.194304e-04	k: 646	n:3180000
MTTP   3180000 perm   4507 sec   (706 perm/sec)   p_kst 2.031447e-04   p_cons 1.047053e-01   p_joint 3.242138e-04

Joint ci ratio: 1.218864e-01	ci left: 3.043786e-04	ci right 3.441865e-04	k: 1033	n:3190000
Cons ci ratio: 6.417835e-03	ci left: 1.043695e-01	ci right 1.050418e-01	k: 334010	n:3190000
KS ci ratio: 1.537394e-01	ci left: 1.880963e-04	ci right 2.197191e-04	k: 649	n:3190000
MTTP   3190000 perm   4533 sec   (704 perm/sec)   p_kst 2.034483e-04   p_cons 1.047053e-01   p_joint 3.238245e-04

Joint ci ratio: 1.216513e-01	ci left: 3.046394e-04	ci right 3.443990e-04	k: 1037	n:3200000
Cons ci ratio: 6.407982e-03	ci left: 1.043647e-01	ci right 1.050360e-01	k: 335040	n:3200000
KS ci ratio: 1.533858e-01	ci left: 1.884100e-04	ci right 2.200060e-04	k: 652	n:3200000
MTTP   3200000 perm   4559 sec   (702 perm/sec)   p_kst 2.037500e-04   p_cons 1.047000e-01   p_joint 3.240625e-04

Joint ci ratio: 1.213012e-01	ci left: 3.055027e-04	ci right 3.452520e-04	k: 1043	n:3210000
Cons ci ratio: 6.397844e-03	ci left: 1.043696e-01	ci right 1.050398e-01	k: 336101	n:3210000
KS ci ratio: 1.530346e-01	ci left: 1.887218e-04	ci right 2.202910e-04	k: 655	n:3210000
MTTP   3210000 perm   4586 sec   (700 perm/sec)   p_kst 2.040498e-04   p_cons 1.047044e-01   p_joint 3.249221e-04

Joint ci ratio: 1.210695e-01	ci left: 3.057585e-04	ci right 3.454596e-04	k: 1047	n:3220000
Cons ci ratio: 6.388018e-03	ci left: 1.043667e-01	ci right 1.050359e-01	k: 337137	n:3220000
KS ci ratio: 1.525701e-01	ci left: 1.893305e-04	ci right 2.208966e-04	k: 659	n:3220000
MTTP   3220000 perm   4612 sec   (698 perm/sec)   p_kst 2.046584e-04   p_cons 1.047009e-01   p_joint 3.251553e-04

Joint ci ratio: 9.581324e-02	ci left: 4.931354e-04	ci right 5.430612e-04	k: 1672	n:3230000
Cons ci ratio: 6.378017e-03	ci left: 1.043703e-01	ci right 1.050384e-01	k: 338194	n:3230000
KS ci ratio: 1.523395e-01	ci left: 1.893399e-04	ci right 2.208555e-04	k: 661	n:3230000
MTTP   3230000 perm   4639 sec   (696 perm/sec)   p_kst 2.046440e-04   p_cons 1.047040e-01   p_joint 5.176471e-04

Joint ci ratio: 9.575607e-02	ci left: 4.922159e-04	ci right 5.420172e-04	k: 1674	n:3240000
Cons ci ratio: 6.367758e-03	ci left: 1.043829e-01	ci right 1.050500e-01	k: 339280	n:3240000
KS ci ratio: 1.521099e-01	ci left: 1.893493e-04	ci right 2.208146e-04	k: 663	n:3240000
MTTP   3240000 perm   4665 sec   (695 perm/sec)   p_kst 2.046296e-04   p_cons 1.047160e-01   p_joint 5.166667e-04

Joint ci ratio: 9.680259e-02	ci left: 4.798910e-04	ci right 5.290060e-04	k: 1638	n:3250000
Cons ci ratio: 6.357632e-03	ci left: 1.043928e-01	ci right 1.050589e-01	k: 340358	n:3250000
KS ci ratio: 1.519955e-01	ci left: 1.890626e-04	ci right 2.204546e-04	k: 664	n:3250000
MTTP   3250000 perm   4692 sec   (693 perm/sec)   p_kst 2.043077e-04   p_cons 1.047255e-01   p_joint 5.040000e-04

Joint ci ratio: 9.665527e-02	ci left: 4.799156e-04	ci right 5.289542e-04	k: 1643	n:3260000
Cons ci ratio: 6.348427e-03	ci left: 1.043770e-01	ci right 1.050421e-01	k: 341352	n:3260000
KS ci ratio: 1.517675e-01	ci left: 1.890729e-04	ci right 2.204151e-04	k: 666	n:3260000
MTTP   3260000 perm   4719 sec   (691 perm/sec)   p_kst 2.042945e-04   p_cons 1.047092e-01   p_joint 5.039877e-04

Joint ci ratio: 9.686189e-02	ci left: 4.763591e-04	ci right 5.251442e-04	k: 1636	n:3270000
Cons ci ratio: 6.338993e-03	ci left: 1.043693e-01	ci right 1.050333e-01	k: 342372	n:3270000
KS ci ratio: 1.515404e-01	ci left: 1.890831e-04	ci right 2.203759e-04	k: 668	n:3270000
MTTP   3270000 perm   4746 sec   (689 perm/sec)   p_kst 2.042813e-04   p_cons 1.047009e-01   p_joint 5.003058e-04

Joint ci ratio: 9.671430e-02	ci left: 4.763942e-04	ci right 5.251044e-04	k: 1641	n:3280000
Cons ci ratio: 6.329343e-03	ci left: 1.043692e-01	ci right 1.050321e-01	k: 343417	n:3280000
KS ci ratio: 1.512018e-01	ci left: 1.893866e-04	ci right 2.206533e-04	k: 671	n:3280000
MTTP   3280000 perm   4772 sec   (687 perm/sec)   p_kst 2.045732e-04   p_cons 1.047003e-01   p_joint 5.003049e-04

Joint ci ratio: 9.704012e-02	ci left: 4.716837e-04	ci right 5.200839e-04	k: 1630	n:3290000
Cons ci ratio: 6.320065e-03	ci left: 1.043593e-01	ci right 1.050213e-01	k: 344430	n:3290000
KS ci ratio: 1.509773e-01	ci left: 1.893959e-04	ci right 2.206134e-04	k: 673	n:3290000
MTTP   3290000 perm   4799 sec   (686 perm/sec)   p_kst 2.045593e-04   p_cons 1.046900e-01   p_joint 4.954407e-04

Joint ci ratio: 9.689172e-02	ci left: 4.717328e-04	ci right 5.200598e-04	k: 1635	n:3300000
Cons ci ratio: 6.310318e-03	ci left: 1.043647e-01	ci right 1.050257e-01	k: 345493	n:3300000
KS ci ratio: 1.508654e-01	ci left: 1.891135e-04	ci right 2.202594e-04	k: 674	n:3300000
MTTP   3300000 perm   4826 sec   (684 perm/sec)   p_kst 2.042424e-04   p_cons 1.046948e-01   p_joint 4.954545e-04

Joint ci ratio: 9.683259e-02	ci left: 4.708972e-04	ci right 5.191075e-04	k: 1637	n:3310000
Cons ci ratio: 6.301174e-03	ci left: 1.043535e-01	ci right 1.050134e-01	k: 346501	n:3310000
KS ci ratio: 1.504203e-01	ci left: 1.897051e-04	ci right 2.208479e-04	k: 678	n:3310000
MTTP   3310000 perm   4853 sec   (682 perm/sec)   p_kst 2.048338e-04   p_cons 1.046831e-01   p_joint 4.945619e-04

Joint ci ratio: 9.683267e-02	ci left: 4.694788e-04	ci right 5.175439e-04	k: 1637	n:3320000
Cons ci ratio: 6.291564e-03	ci left: 1.043573e-01	ci right 1.050163e-01	k: 347559	n:3320000
KS ci ratio: 1.504204e-01	ci left: 1.891337e-04	ci right 2.201827e-04	k: 678	n:3320000
MTTP   3320000 perm   4880 sec   (680 perm/sec)   p_kst 2.042169e-04   p_cons 1.046864e-01   p_joint 4.930723e-04

Joint ci ratio: 9.653836e-02	ci left: 4.709994e-04	ci right 5.190653e-04	k: 1647	n:3330000
Cons ci ratio: 6.282793e-03	ci left: 1.043375e-01	ci right 1.049954e-01	k: 348538	n:3330000
KS ci ratio: 1.497601e-01	ci left: 1.902999e-04	ci right 2.213909e-04	k: 684	n:3330000
MTTP   3330000 perm   4908 sec   (678 perm/sec)   p_kst 2.054054e-04   p_cons 1.046661e-01   p_joint 4.945946e-04

Joint ci ratio: 9.642143e-02	ci left: 4.707579e-04	ci right 5.187377e-04	k: 1651	n:3340000
Cons ci ratio: 6.273087e-03	ci left: 1.043467e-01	ci right 1.050037e-01	k: 349614	n:3340000
KS ci ratio: 1.493247e-01	ci left: 1.908829e-04	ci right 2.219704e-04	k: 688	n:3340000
MTTP   3340000 perm   4935 sec   (677 perm/sec)   p_kst 2.059880e-04   p_cons 1.046749e-01   p_joint 4.943114e-04

Joint ci ratio: 9.633402e-02	ci left: 4.702266e-04	ci right 5.181064e-04	k: 1654	n:3350000
Cons ci ratio: 6.264204e-03	ci left: 1.043327e-01	ci right 1.049886e-01	k: 350612	n:3350000
KS ci ratio: 1.493247e-01	ci left: 1.903131e-04	ci right 2.213079e-04	k: 688	n:3350000
MTTP   3350000 perm   4962 sec   (675 perm/sec)   p_kst 2.053731e-04   p_cons 1.046603e-01   p_joint 4.937313e-04

Joint ci ratio: 9.624686e-02	ci left: 4.696985e-04	ci right 5.174788e-04	k: 1657	n:3360000
Cons ci ratio: 6.255238e-03	ci left: 1.043223e-01	ci right 1.049772e-01	k: 351622	n:3360000
KS ci ratio: 1.493248e-01	ci left: 1.897467e-04	ci right 2.206492e-04	k: 688	n:3360000
MTTP   3360000 perm   4990 sec   (673 perm/sec)   p_kst 2.047619e-04   p_cons 1.046494e-01   p_joint 4.931548e-04

Joint ci ratio: 9.767182e-02	ci left: 4.544065e-04	ci right 5.013548e-04	k: 1609	n:3370000
Cons ci ratio: 6.246045e-03	ci left: 1.043200e-01	ci right 1.049739e-01	k: 352659	n:3370000
KS ci ratio: 1.491085e-01	ci left: 1.897550e-04	ci right 2.206101e-04	k: 690	n:3370000
MTTP   3370000 perm   5017 sec   (672 perm/sec)   p_kst 2.047478e-04   p_cons 1.046466e-01   p_joint 4.774481e-04

Joint ci ratio: 9.743002e-02	ci left: 4.553713e-04	ci right 5.022961e-04	k: 1617	n:3380000
Cons ci ratio: 6.236980e-03	ci left: 1.043150e-01	ci right 1.049679e-01	k: 353687	n:3380000
KS ci ratio: 1.486788e-01	ci left: 1.903329e-04	ci right 2.211849e-04	k: 694	n:3380000
MTTP   3380000 perm   5044 sec   (670 perm/sec)   p_kst 2.053254e-04   p_cons 1.046411e-01   p_joint 4.784024e-04

Joint ci ratio: 9.727982e-02	ci left: 4.554670e-04	ci right 5.023252e-04	k: 1622	n:3390000
Cons ci ratio: 6.227367e-03	ci left: 1.043277e-01	ci right 1.049797e-01	k: 354775	n:3390000
KS ci ratio: 1.483589e-01	ci left: 1.906235e-04	ci right 2.214502e-04	k: 697	n:3390000
MTTP   3390000 perm   5072 sec   (668 perm/sec)   p_kst 2.056047e-04   p_cons 1.046534e-01   p_joint 4.784661e-04

Joint ci ratio: 9.719006e-02	ci left: 4.549883e-04	ci right 5.017516e-04	k: 1625	n:3400000
Cons ci ratio: 6.218412e-03	ci left: 1.043219e-01	ci right 1.049729e-01	k: 355800	n:3400000
KS ci ratio: 1.481468e-01	ci left: 1.906293e-04	ci right 2.214089e-04	k: 699	n:3400000
MTTP   3400000 perm   5100 sec   (667 perm/sec)   p_kst 2.055882e-04   p_cons 1.046471e-01   p_joint 4.779412e-04

Joint ci ratio: 9.710055e-02	ci left: 4.545124e-04	ci right 5.011813e-04	k: 1628	n:3410000
Cons ci ratio: 6.208913e-03	ci left: 1.043336e-01	ci right 1.049837e-01	k: 356885	n:3410000
KS ci ratio: 1.478303e-01	ci left: 1.909175e-04	ci right 2.216720e-04	k: 702	n:3410000
MTTP   3410000 perm   5128 sec   (665 perm/sec)   p_kst 2.058651e-04   p_cons 1.046584e-01   p_joint 4.774194e-04

Joint ci ratio: 9.683337e-02	ci left: 4.557512e-04	ci right 5.024113e-04	k: 1637	n:3420000
Cons ci ratio: 6.199786e-03	ci left: 1.043354e-01	ci right 1.049846e-01	k: 357936	n:3420000
KS ci ratio: 1.474115e-01	ci left: 1.914856e-04	ci right 2.222365e-04	k: 706	n:3420000
MTTP   3420000 perm   5155 sec   (663 perm/sec)   p_kst 2.064327e-04   p_cons 1.046596e-01   p_joint 4.786550e-04

Joint ci ratio: 9.665648e-02	ci left: 4.561294e-04	ci right 5.027381e-04	k: 1643	n:3430000
Cons ci ratio: 6.190854e-03	ci left: 1.043325e-01	ci right 1.049807e-01	k: 358971	n:3430000
KS ci ratio: 1.473074e-01	ci left: 1.912081e-04	ci right 2.218909e-04	k: 707	n:3430000
MTTP   3430000 perm   5184 sec   (662 perm/sec)   p_kst 2.061224e-04   p_cons 1.046563e-01   p_joint 4.790087e-04

Joint ci ratio: 9.656844e-02	ci left: 4.556545e-04	ci right 5.021698e-04	k: 1646	n:3440000
Cons ci ratio: 6.181615e-03	ci left: 1.043401e-01	ci right 1.049873e-01	k: 360042	n:3440000
KS ci ratio: 1.472035e-01	ci left: 1.909323e-04	ci right 2.215473e-04	k: 708	n:3440000
MTTP   3440000 perm   5212 sec   (660 perm/sec)   p_kst 2.058140e-04   p_cons 1.046634e-01   p_joint 4.784884e-04

Joint ci ratio: 9.648064e-02	ci left: 4.551823e-04	ci right 5.016048e-04	k: 1649	n:3450000
Cons ci ratio: 6.172799e-03	ci left: 1.043360e-01	ci right 1.049823e-01	k: 361073	n:3450000
KS ci ratio: 1.472035e-01	ci left: 1.903789e-04	ci right 2.209051e-04	k: 708	n:3450000
MTTP   3450000 perm   5241 sec   (658 perm/sec)   p_kst 2.052174e-04   p_cons 1.046588e-01   p_joint 4.779710e-04

Joint ci ratio: 9.665669e-02	ci left: 4.521745e-04	ci right 4.983791e-04	k: 1643	n:3460000
Cons ci ratio: 6.163250e-03	ci left: 1.043554e-01	ci right 1.050008e-01	k: 362185	n:3460000
KS ci ratio: 1.468931e-01	ci left: 1.906638e-04	ci right 2.211656e-04	k: 711	n:3460000
MTTP   3460000 perm   5268 sec   (657 perm/sec)   p_kst 2.054913e-04   p_cons 1.046777e-01   p_joint 4.748555e-04

Joint ci ratio: 9.648077e-02	ci left: 4.525588e-04	ci right 4.987137e-04	k: 1649	n:3470000
Cons ci ratio: 6.154475e-03	ci left: 1.043524e-01	ci right 1.049969e-01	k: 363220	n:3470000
KS ci ratio: 1.465846e-01	ci left: 1.909471e-04	ci right 2.214245e-04	k: 714	n:3470000
MTTP   3470000 perm   5296 sec   (655 perm/sec)   p_kst 2.057637e-04   p_cons 1.046744e-01   p_joint 4.752161e-04

Joint ci ratio: 9.665682e-02	ci left: 4.495758e-04	ci right 4.955149e-04	k: 1643	n:3480000
Cons ci ratio: 6.145124e-03	ci left: 1.043682e-01	ci right 1.050118e-01	k: 364320	n:3480000
KS ci ratio: 1.463800e-01	ci left: 1.909521e-04	ci right 2.213840e-04	k: 716	n:3480000
MTTP   3480000 perm   5325 sec   (654 perm/sec)   p_kst 2.057471e-04   p_cons 1.046897e-01   p_joint 4.721264e-04

Joint ci ratio: 9.639327e-02	ci left: 4.508042e-04	ci right 4.967361e-04	k: 1652	n:3490000
Cons ci ratio: 6.136913e-03	ci left: 1.043504e-01	ci right 1.049930e-01	k: 365303	n:3490000
KS ci ratio: 1.460747e-01	ci left: 1.912331e-04	ci right 2.216407e-04	k: 719	n:3490000
MTTP   3490000 perm   5353 sec   (652 perm/sec)   p_kst 2.060172e-04   p_cons 1.046713e-01   p_joint 4.733524e-04

Joint ci ratio: 8.687154e-02	ci left: 5.561659e-04	ci right 6.069519e-04	k: 2034	n:3500000
Cons ci ratio: 5.887339e-03	ci left: 1.120958e-01	ci right 1.127580e-01	k: 393493	n:3500000
KS ci ratio: 1.459734e-01	ci left: 1.909620e-04	ci right 2.213036e-04	k: 720	n:3500000
MTTP   3500000 perm   5382 sec   (650 perm/sec)   p_kst 2.057143e-04   p_cons 1.124266e-01   p_joint 5.811429e-04

Joint ci ratio: 8.674375e-02	ci left: 5.562537e-04	ci right 6.069692e-04	k: 2040	n:3510000
Cons ci ratio: 5.878705e-03	ci left: 1.121045e-01	ci right 1.127657e-01	k: 394646	n:3510000
KS ci ratio: 1.457713e-01	ci left: 1.909669e-04	ci right 2.212637e-04	k: 722	n:3510000
MTTP   3510000 perm   5411 sec   (649 perm/sec)   p_kst 2.056980e-04   p_cons 1.124348e-01   p_joint 5.811966e-04

Joint ci ratio: 8.661653e-02	ci left: 5.563411e-04	ci right 6.069864e-04	k: 2046	n:3520000
Cons ci ratio: 5.870703e-03	ci left: 1.120929e-01	ci right 1.127532e-01	k: 395728	n:3520000
KS ci ratio: 1.456706e-01	ci left: 1.906981e-04	ci right 2.209295e-04	k: 723	n:3520000
MTTP   3520000 perm   5440 sec   (647 perm/sec)   p_kst 2.053977e-04   p_cons 1.124227e-01   p_joint 5.812500e-04

Joint ci ratio: 8.674389e-02	ci left: 5.531021e-04	ci right 6.035303e-04	k: 2040	n:3530000
Cons ci ratio: 5.862450e-03	ci left: 1.120910e-01	ci right 1.127504e-01	k: 396844	n:3530000
KS ci ratio: 1.452699e-01	ci left: 1.912498e-04	ci right 2.214780e-04	k: 727	n:3530000
MTTP   3530000 perm   5469 sec   (645 perm/sec)   p_kst 2.059490e-04   p_cons 1.124204e-01   p_joint 5.779037e-04

Joint ci ratio: 8.661667e-02	ci left: 5.531978e-04	ci right 6.035571e-04	k: 2046	n:3540000
Cons ci ratio: 5.854108e-03	ci left: 1.120934e-01	ci right 1.127518e-01	k: 397975	n:3540000
KS ci ratio: 1.451702e-01	ci left: 1.909818e-04	ci right 2.211451e-04	k: 728	n:3540000
MTTP   3540000 perm   5498 sec   (644 perm/sec)   p_kst 2.056497e-04   p_cons 1.124223e-01   p_joint 5.779661e-04

Joint ci ratio: 8.655330e-02	ci left: 5.524663e-04	ci right 6.027203e-04	k: 2049	n:3550000
Cons ci ratio: 5.845933e-03	ci left: 1.120913e-01	ci right 1.127488e-01	k: 399090	n:3550000
KS ci ratio: 1.451703e-01	ci left: 1.904438e-04	ci right 2.205222e-04	k: 728	n:3550000
MTTP   3550000 perm   5527 sec   (642 perm/sec)   p_kst 2.050704e-04   p_cons 1.124197e-01   p_joint 5.771831e-04

Joint ci ratio: 8.640589e-02	ci left: 5.528382e-04	ci right 6.030361e-04	k: 2056	n:3560000
Cons ci ratio: 5.837554e-03	ci left: 1.120973e-01	ci right 1.127539e-01	k: 400234	n:3560000
KS ci ratio: 1.448725e-01	ci left: 1.907210e-04	ci right 2.207760e-04	k: 731	n:3560000
MTTP   3560000 perm   5556 sec   (641 perm/sec)   p_kst 2.053371e-04   p_cons 1.124253e-01   p_joint 5.775281e-04

Joint ci ratio: 8.784932e-02	ci left: 5.329308e-04	ci right 5.821709e-04	k: 1989	n:3570000
Cons ci ratio: 5.829292e-03	ci left: 1.121005e-01	ci right 1.127561e-01	k: 401368	n:3570000
KS ci ratio: 1.445765e-01	ci left: 1.909967e-04	ci right 2.210283e-04	k: 734	n:3570000
MTTP   3570000 perm   5585 sec   (639 perm/sec)   p_kst 2.056022e-04   p_cons 1.124280e-01   p_joint 5.571429e-04

Joint ci ratio: 8.807107e-02	ci left: 5.287102e-04	ci right 5.776901e-04	k: 1979	n:3580000
Cons ci ratio: 5.821074e-03	ci left: 1.121034e-01	ci right 1.127581e-01	k: 402501	n:3580000
KS ci ratio: 1.444782e-01	ci left: 1.907324e-04	ci right 2.207003e-04	k: 735	n:3580000
MTTP   3580000 perm   5614 sec   (638 perm/sec)   p_kst 2.053073e-04   p_cons 1.124304e-01   p_joint 5.527933e-04

Joint ci ratio: 8.796009e-02	ci left: 5.285996e-04	ci right 5.775043e-04	k: 1984	n:3590000
Cons ci ratio: 5.812582e-03	ci left: 1.121168e-01	ci right 1.127707e-01	k: 403672	n:3590000
KS ci ratio: 1.443802e-01	ci left: 1.904696e-04	ci right 2.203742e-04	k: 736	n:3590000
MTTP   3590000 perm   5642 sec   (636 perm/sec)   p_kst 2.050139e-04   p_cons 1.124435e-01   p_joint 5.526462e-04

Joint ci ratio: 8.820503e-02	ci left: 5.241430e-04	ci right 5.727773e-04	k: 1973	n:3600000
Cons ci ratio: 5.804572e-03	ci left: 1.121150e-01	ci right 1.127679e-01	k: 404788	n:3600000
KS ci ratio: 1.441847e-01	ci left: 1.904760e-04	ci right 2.203376e-04	k: 738	n:3600000
MTTP   3600000 perm   5671 sec   (635 perm/sec)   p_kst 2.050000e-04   p_cons 1.124411e-01   p_joint 5.480556e-04

Joint ci ratio: 8.813811e-02	ci left: 5.235037e-04	ci right 5.720400e-04	k: 1976	n:3610000
Cons ci ratio: 5.796434e-03	ci left: 1.121186e-01	ci right 1.127707e-01	k: 405924	n:3610000
KS ci ratio: 1.440873e-01	ci left: 1.902154e-04	ci right 2.200143e-04	k: 739	n:3610000
MTTP   3610000 perm   5701 sec   (633 perm/sec)   p_kst 2.047091e-04   p_cons 1.124443e-01   p_joint 5.473684e-04

Joint ci ratio: 8.807134e-02	ci left: 5.228681e-04	ci right 5.713068e-04	k: 1979	n:3620000
Cons ci ratio: 5.788658e-03	ci left: 1.121109e-01	ci right 1.127621e-01	k: 407019	n:3620000
KS ci ratio: 1.439900e-01	ci left: 1.899562e-04	ci right 2.196927e-04	k: 740	n:3620000
MTTP   3620000 perm   5733 sec   (631 perm/sec)   p_kst 2.044199e-04   p_cons 1.124362e-01   p_joint 5.466851e-04

Joint ci ratio: 8.800473e-02	ci left: 5.222359e-04	ci right 5.705776e-04	k: 1982	n:3630000
Cons ci ratio: 5.780562e-03	ci left: 1.121154e-01	ci right 1.127656e-01	k: 408158	n:3630000
KS ci ratio: 1.438930e-01	ci left: 1.896985e-04	ci right 2.193729e-04	k: 741	n:3630000
MTTP   3630000 perm   5762 sec   (630 perm/sec)   p_kst 2.041322e-04   p_cons 1.124402e-01   p_joint 5.460055e-04

Joint ci ratio: 8.784979e-02	ci left: 5.226820e-04	ci right 5.709754e-04	k: 1989	n:3640000
Cons ci ratio: 5.772556e-03	ci left: 1.121179e-01	ci right 1.127673e-01	k: 409290	n:3640000
KS ci ratio: 1.436030e-01	ci left: 1.899719e-04	ci right 2.196240e-04	k: 744	n:3640000
MTTP   3640000 perm   5792 sec   (628 perm/sec)   p_kst 2.043956e-04   p_cons 1.124423e-01   p_joint 5.464286e-04

Joint ci ratio: 8.771764e-02	ci left: 5.228577e-04	ci right 5.710910e-04	k: 1995	n:3650000
Cons ci ratio: 5.765169e-03	ci left: 1.121002e-01	ci right 1.127486e-01	k: 410348	n:3650000
KS ci ratio: 1.433147e-01	ci left: 1.902438e-04	ci right 2.198737e-04	k: 747	n:3650000
MTTP   3650000 perm   5822 sec   (627 perm/sec)   p_kst 2.046575e-04   p_cons 1.124241e-01   p_joint 5.465753e-04

Joint ci ratio: 8.758609e-02	ci left: 5.230326e-04	ci right 5.712059e-04	k: 2001	n:3660000
Cons ci ratio: 5.757029e-03	ci left: 1.121096e-01	ci right 1.127571e-01	k: 411505	n:3660000
KS ci ratio: 1.429330e-01	ci left: 1.907778e-04	ci right 2.204049e-04	k: 751	n:3660000
MTTP   3660000 perm   5851 sec   (626 perm/sec)   p_kst 2.051913e-04   p_cons 1.124331e-01   p_joint 5.467213e-04

Joint ci ratio: 8.754242e-02	ci left: 5.221404e-04	ci right 5.702064e-04	k: 2003	n:3670000
Cons ci ratio: 5.748532e-03	ci left: 1.121325e-01	ci right 1.127792e-01	k: 412712	n:3670000
KS ci ratio: 1.429330e-01	ci left: 1.902579e-04	ci right 2.198044e-04	k: 751	n:3670000
MTTP   3670000 perm   5881 sec   (624 perm/sec)   p_kst 2.046322e-04   p_cons 1.124556e-01   p_joint 5.457766e-04

Joint ci ratio: 8.964847e-02	ci left: 4.960094e-04	ci right 5.428259e-04	k: 1910	n:3680000
Cons ci ratio: 5.740791e-03	ci left: 1.121304e-01	ci right 1.127762e-01	k: 413827	n:3680000
KS ci ratio: 1.423661e-01	ci left: 1.913132e-04	ci right 2.208956e-04	k: 757	n:3680000
MTTP   3680000 perm   5911 sec   (623 perm/sec)   p_kst 2.057065e-04   p_cons 1.124530e-01   p_joint 5.190217e-04

Joint ci ratio: 8.953142e-02	ci left: 4.959898e-04	ci right 5.427402e-04	k: 1915	n:3690000
Cons ci ratio: 5.733415e-03	ci left: 1.121166e-01	ci right 1.127615e-01	k: 414899	n:3690000
KS ci ratio: 1.420852e-01	ci left: 1.915788e-04	ci right 2.211389e-04	k: 760	n:3690000
MTTP   3690000 perm   5941 sec   (621 perm/sec)   p_kst 2.059621e-04   p_cons 1.124388e-01   p_joint 5.189702e-04

Joint ci ratio: 8.939155e-02	ci left: 4.962346e-04	ci right 5.429312e-04	k: 1921	n:3700000
Cons ci ratio: 5.725270e-03	ci left: 1.121307e-01	ci right 1.127748e-01	k: 416074	n:3700000
KS ci ratio: 1.418060e-01	ci left: 1.918430e-04	ci right 2.213808e-04	k: 763	n:3700000
MTTP   3700000 perm   5971 sec   (620 perm/sec)   p_kst 2.062162e-04   p_cons 1.124524e-01   p_joint 5.191892e-04

Joint ci ratio: 8.927551e-02	ci left: 4.962147e-04	ci right 5.428456e-04	k: 1926	n:3710000
Cons ci ratio: 5.717684e-03	ci left: 1.121264e-01	ci right 1.127696e-01	k: 417181	n:3710000
KS ci ratio: 1.415283e-01	ci left: 1.921059e-04	ci right 2.216214e-04	k: 766	n:3710000
MTTP   3710000 perm   6001 sec   (618 perm/sec)   p_kst 2.064690e-04   p_cons 1.124477e-01   p_joint 5.191375e-04

Joint ci ratio: 8.915991e-02	ci left: 4.961949e-04	ci right 5.427604e-04	k: 1931	n:3720000
Cons ci ratio: 5.710382e-03	ci left: 1.121133e-01	ci right 1.127556e-01	k: 418255	n:3720000
KS ci ratio: 1.412524e-01	ci left: 1.923674e-04	ci right 2.218606e-04	k: 769	n:3720000
MTTP   3720000 perm   6031 sec   (617 perm/sec)   p_kst 2.067204e-04   p_cons 1.124341e-01   p_joint 5.190860e-04

Joint ci ratio: 8.911384e-02	ci left: 4.953888e-04	ci right 5.418534e-04	k: 1933	n:3730000
Cons ci ratio: 5.703154e-03	ci left: 1.120986e-01	ci right 1.127400e-01	k: 419323	n:3730000
KS ci ratio: 1.412524e-01	ci left: 1.918517e-04	ci right 2.212658e-04	k: 769	n:3730000
MTTP   3730000 perm   6061 sec   (615 perm/sec)   p_kst 2.061662e-04   p_cons 1.124190e-01   p_joint 5.182306e-04

Joint ci ratio: 8.906784e-02	ci left: 4.945871e-04	ci right 5.409513e-04	k: 1935	n:3740000
Cons ci ratio: 5.696045e-03	ci left: 1.120809e-01	ci right 1.127214e-01	k: 420379	n:3740000
KS ci ratio: 1.410693e-01	ci left: 1.918546e-04	ci right 2.212278e-04	k: 771	n:3740000
MTTP   3740000 perm   6091 sec   (614 perm/sec)   p_kst 2.061497e-04   p_cons 1.124008e-01   p_joint 5.173797e-04

Joint ci ratio: 8.879299e-02	ci left: 4.963970e-04	ci right 5.427799e-04	k: 1947	n:3750000
Cons ci ratio: 5.688042e-03	ci left: 1.120954e-01	ci right 1.127351e-01	k: 421556	n:3750000
KS ci ratio: 1.407052e-01	ci left: 1.923721e-04	ci right 2.217421e-04	k: 775	n:3750000
MTTP   3750000 perm   6121 sec   (613 perm/sec)   p_kst 2.066667e-04   p_cons 1.124149e-01   p_joint 5.192000e-04

Joint ci ratio: 8.863387e-02	ci left: 4.968973e-04	ci right 5.432393e-04	k: 1954	n:3760000
Cons ci ratio: 5.680467e-03	ci left: 1.120960e-01	ci right 1.127349e-01	k: 422681	n:3760000
KS ci ratio: 1.404340e-01	ci left: 1.926302e-04	ci right 2.219783e-04	k: 778	n:3760000
MTTP   3760000 perm   6151 sec   (611 perm/sec)   p_kst 2.069149e-04   p_cons 1.124152e-01   p_joint 5.196809e-04

Joint ci ratio: 8.854335e-02	ci left: 4.966167e-04	ci right 5.428828e-04	k: 1958	n:3770000
Cons ci ratio: 5.672861e-03	ci left: 1.120988e-01	ci right 1.127368e-01	k: 423814	n:3770000
KS ci ratio: 1.402541e-01	ci left: 1.926312e-04	ci right 2.219386e-04	k: 780	n:3770000
MTTP   3770000 perm   6182 sec   (610 perm/sec)   p_kst 2.068966e-04   p_cons 1.124175e-01   p_joint 5.193634e-04

Joint ci ratio: 8.843057e-02	ci left: 4.965964e-04	ci right 5.427987e-04	k: 1963	n:3780000
Cons ci ratio: 5.665038e-03	ci left: 1.121103e-01	ci right 1.127475e-01	k: 424980	n:3780000
KS ci ratio: 1.400748e-01	ci left: 1.926321e-04	ci right 2.218991e-04	k: 782	n:3780000
MTTP   3780000 perm   6212 sec   (608 perm/sec)   p_kst 2.068783e-04   p_cons 1.124286e-01   p_joint 5.193122e-04

Joint ci ratio: 8.829579e-02	ci left: 4.968343e-04	ci right 5.429846e-04	k: 1969	n:3790000
Cons ci ratio: 5.657345e-03	ci left: 1.121183e-01	ci right 1.127546e-01	k: 426133	n:3790000
KS ci ratio: 1.397184e-01	ci left: 1.931423e-04	ci right 2.224059e-04	k: 786	n:3790000
MTTP   3790000 perm   6243 sec   (607 perm/sec)   p_kst 2.073879e-04   p_cons 1.124361e-01   p_joint 5.195251e-04

Joint ci ratio: 8.816163e-02	ci left: 4.970709e-04	ci right 5.431694e-04	k: 1975	n:3800000
Cons ci ratio: 5.649869e-03	ci left: 1.121196e-01	ci right 1.127552e-01	k: 427261	n:3800000
KS ci ratio: 1.394528e-01	ci left: 1.933960e-04	ci right 2.226377e-04	k: 789	n:3800000
MTTP   3800000 perm   6273 sec   (606 perm/sec)   p_kst 2.076316e-04   p_cons 1.124371e-01   p_joint 5.197368e-04

Joint ci ratio: 9.002712e-02	ci left: 4.749798e-04	ci right 5.200107e-04	k: 1894	n:3810000
Cons ci ratio: 5.642616e-03	ci left: 1.121142e-01	ci right 1.127489e-01	k: 428363	n:3810000
KS ci ratio: 1.393647e-01	ci left: 1.931417e-04	ci right 2.223249e-04	k: 790	n:3810000
MTTP   3810000 perm   6303 sec   (604 perm/sec)   p_kst 2.073491e-04   p_cons 1.124312e-01   p_joint 4.971129e-04

Joint ci ratio: 8.993227e-02	ci left: 4.747599e-04	ci right 5.197201e-04	k: 1898	n:3820000
Cons ci ratio: 5.635265e-03	ci left: 1.121132e-01	ci right 1.127470e-01	k: 429482	n:3820000
KS ci ratio: 1.391011e-01	ci left: 1.933940e-04	ci right 2.225556e-04	k: 793	n:3820000
MTTP   3820000 perm   6334 sec   (603 perm/sec)   p_kst 2.075916e-04   p_cons 1.124298e-01   p_joint 4.968586e-04

Joint ci ratio: 8.979052e-02	ci left: 4.750517e-04	ci right 5.199649e-04	k: 1904	n:3830000
Cons ci ratio: 5.628126e-03	ci left: 1.121057e-01	ci right 1.127387e-01	k: 430576	n:3830000
KS ci ratio: 1.389263e-01	ci left: 1.933931e-04	ci right 2.225149e-04	k: 795	n:3830000
MTTP   3830000 perm   6365 sec   (602 perm/sec)   p_kst 2.075718e-04   p_cons 1.124219e-01   p_joint 4.971279e-04

Joint ci ratio: 8.971993e-02	ci left: 4.745783e-04	ci right 5.194096e-04	k: 1907	n:3840000
Cons ci ratio: 5.620993e-03	ci left: 1.120991e-01	ci right 1.127312e-01	k: 431673	n:3840000
KS ci ratio: 1.389263e-01	ci left: 1.928895e-04	ci right 2.219354e-04	k: 795	n:3840000
MTTP   3840000 perm   6396 sec   (600 perm/sec)   p_kst 2.070312e-04   p_cons 1.124148e-01   p_joint 4.966146e-04

Joint ci ratio: 8.967297e-02	ci left: 4.738535e-04	ci right 5.185916e-04	k: 1909	n:3850000
Cons ci ratio: 5.613850e-03	ci left: 1.120937e-01	ci right 1.127250e-01	k: 432775	n:3850000
KS ci ratio: 1.388391e-01	ci left: 1.926392e-04	ci right 2.216277e-04	k: 796	n:3850000
MTTP   3850000 perm   6428 sec   (599 perm/sec)   p_kst 2.067532e-04   p_cons 1.124091e-01   p_joint 4.958442e-04

Joint ci ratio: 8.955583e-02	ci left: 4.738922e-04	ci right 5.185725e-04	k: 1914	n:3860000
Cons ci ratio: 5.606676e-03	ci left: 1.120905e-01	ci right 1.127210e-01	k: 433885	n:3860000
KS ci ratio: 1.388392e-01	ci left: 1.921401e-04	ci right 2.210536e-04	k: 796	n:3860000
MTTP   3860000 perm   6459 sec   (598 perm/sec)   p_kst 2.062176e-04   p_cons 1.124054e-01   p_joint 4.958549e-04

Joint ci ratio: 9.007504e-02	ci left: 4.671105e-04	ci right 5.114202e-04	k: 1892	n:3870000
Cons ci ratio: 5.599609e-03	ci left: 1.120844e-01	ci right 1.127141e-01	k: 434984	n:3870000
KS ci ratio: 1.385786e-01	ci left: 1.923919e-04	ci right 2.212844e-04	k: 799	n:3870000
MTTP   3870000 perm   6490 sec   (596 perm/sec)   p_kst 2.064599e-04   p_cons 1.123990e-01   p_joint 4.888889e-04

Joint ci ratio: 8.995632e-02	ci left: 4.671663e-04	ci right 5.114198e-04	k: 1897	n:3880000
Cons ci ratio: 5.592439e-03	ci left: 1.120830e-01	ci right 1.127119e-01	k: 436101	n:3880000
KS ci ratio: 1.384921e-01	ci left: 1.921449e-04	ci right 2.209808e-04	k: 800	n:3880000
MTTP   3880000 perm   6522 sec   (595 perm/sec)   p_kst 2.061856e-04   p_cons 1.123972e-01   p_joint 4.889175e-04

Joint ci ratio: 8.986168e-02	ci left: 4.669705e-04	ci right 5.111565e-04	k: 1901	n:3890000
Cons ci ratio: 5.585181e-03	ci left: 1.120858e-01	ci right 1.127138e-01	k: 437234	n:3890000
KS ci ratio: 1.384057e-01	ci left: 1.918991e-04	ci right 2.206787e-04	k: 801	n:3890000
MTTP   3890000 perm   6553 sec   (594 perm/sec)   p_kst 2.059126e-04   p_cons 1.123995e-01   p_joint 4.886889e-04

Joint ci ratio: 9.070054e-02	ci left: 4.570013e-04	ci right 5.006690e-04	k: 1866	n:3900000
Cons ci ratio: 5.577328e-03	ci left: 1.121108e-01	ci right 1.127380e-01	k: 438454	n:3900000
KS ci ratio: 1.382335e-01	ci left: 1.919021e-04	ci right 2.206434e-04	k: 803	n:3900000
MTTP   3900000 perm   6585 sec   (592 perm/sec)   p_kst 2.058974e-04   p_cons 1.124241e-01   p_joint 4.784615e-04

Joint ci ratio: 9.050680e-02	ci left: 4.578322e-04	ci right 5.014809e-04	k: 1874	n:3910000
Cons ci ratio: 5.570015e-03	ci left: 1.121175e-01	ci right 1.127440e-01	k: 439603	n:3910000
KS ci ratio: 1.380619e-01	ci left: 1.919052e-04	ci right 2.206083e-04	k: 805	n:3910000
MTTP   3910000 perm   6616 sec   (591 perm/sec)   p_kst 2.058824e-04   p_cons 1.124304e-01   p_joint 4.792839e-04

Joint ci ratio: 9.041042e-02	ci left: 4.576616e-04	ci right 5.012451e-04	k: 1878	n:3920000
Cons ci ratio: 5.563270e-03	ci left: 1.121048e-01	ci right 1.127305e-01	k: 440676	n:3920000
KS ci ratio: 1.377205e-01	ci left: 1.924008e-04	ci right 2.211011e-04	k: 809	n:3920000
MTTP   3920000 perm   6647 sec   (590 perm/sec)   p_kst 2.063776e-04   p_cons 1.124173e-01   p_joint 4.790816e-04

Joint ci ratio: 9.038642e-02	ci left: 4.567457e-04	ci right 5.002299e-04	k: 1879	n:3930000
Cons ci ratio: 5.556281e-03	ci left: 1.121019e-01	ci right 1.127267e-01	k: 441787	n:3930000
KS ci ratio: 1.377205e-01	ci left: 1.919112e-04	ci right 2.205385e-04	k: 809	n:3930000
MTTP   3930000 perm   6679 sec   (588 perm/sec)   p_kst 2.058524e-04   p_cons 1.124140e-01   p_joint 4.781170e-04

Joint ci ratio: 9.021859e-02	ci left: 4.573230e-04	ci right 5.007770e-04	k: 1886	n:3940000
Cons ci ratio: 5.549368e-03	ci left: 1.120971e-01	ci right 1.127212e-01	k: 442891	n:3940000
KS ci ratio: 1.374662e-01	ci left: 1.921594e-04	ci right 2.207663e-04	k: 812	n:3940000
MTTP   3940000 perm   6711 sec   (587 perm/sec)   p_kst 2.060914e-04   p_cons 1.124089e-01   p_joint 4.786802e-04

Joint ci ratio: 8.998042e-02	ci left: 4.586398e-04	ci right 5.020979e-04	k: 1896	n:3950000
Cons ci ratio: 5.542410e-03	ci left: 1.120950e-01	ci right 1.127182e-01	k: 444005	n:3950000
KS ci ratio: 1.371292e-01	ci left: 1.926508e-04	ci right 2.212549e-04	k: 816	n:3950000
MTTP   3950000 perm   6744 sec   (586 perm/sec)   p_kst 2.065823e-04   p_cons 1.124063e-01   p_joint 4.800000e-04

Joint ci ratio: 9.067658e-02	ci left: 4.503237e-04	ci right 4.933414e-04	k: 1867	n:3960000
Cons ci ratio: 5.535268e-03	ci left: 1.121004e-01	ci right 1.127229e-01	k: 445149	n:3960000
KS ci ratio: 1.370454e-01	ci left: 1.924081e-04	ci right 2.209573e-04	k: 817	n:3960000
MTTP   3960000 perm   6776 sec   (584 perm/sec)   p_kst 2.063131e-04   p_cons 1.124114e-01   p_joint 4.714646e-04

Joint ci ratio: 9.136428e-02	ci left: 4.422970e-04	ci right 4.848855e-04	k: 1839	n:3970000
Cons ci ratio: 5.527811e-03	ci left: 1.121181e-01	ci right 1.127399e-01	k: 446342	n:3970000
KS ci ratio: 1.369617e-01	ci left: 1.921667e-04	ci right 2.206613e-04	k: 818	n:3970000
MTTP   3970000 perm   6808 sec   (583 perm/sec)   p_kst 2.060453e-04   p_cons 1.124287e-01   p_joint 4.632242e-04

Joint ci ratio: 9.128991e-02	ci left: 4.419222e-04	ci right 4.844382e-04	k: 1842	n:3980000
Cons ci ratio: 5.521066e-03	ci left: 1.121112e-01	ci right 1.127321e-01	k: 447437	n:3980000
KS ci ratio: 1.367948e-01	ci left: 1.921692e-04	ci right 2.206266e-04	k: 820	n:3980000
MTTP   3980000 perm   6840 sec   (582 perm/sec)   p_kst 2.060302e-04   p_cons 1.124214e-01   p_joint 4.628141e-04

Joint ci ratio: 9.119101e-02	ci left: 4.417943e-04	ci right 4.842494e-04	k: 1846	n:3990000
Cons ci ratio: 5.514269e-03	ci left: 1.121070e-01	ci right 1.127271e-01	k: 448543	n:3990000
KS ci ratio: 1.366285e-01	ci left: 1.921717e-04	ci right 2.205920e-04	k: 822	n:3990000
MTTP   3990000 perm   6872 sec   (581 perm/sec)   p_kst 2.060150e-04   p_cons 1.124168e-01   p_joint 4.626566e-04

Joint ci ratio: 9.101867e-02	ci left: 4.423999e-04	ci right 4.848286e-04	k: 1853	n:4000000
Cons ci ratio: 5.507277e-03	ci left: 1.121108e-01	ci right 1.127302e-01	k: 449681	n:4000000
KS ci ratio: 1.364628e-01	ci left: 1.921742e-04	ci right 2.205576e-04	k: 824	n:4000000
MTTP   4000000 perm   6904 sec   (579 perm/sec)   p_kst 2.060000e-04   p_cons 1.124202e-01   p_joint 4.632500e-04

Joint ci ratio: 9.087173e-02	ci left: 4.427589e-04	ci right 4.851499e-04	k: 1859	n:4010000
Cons ci ratio: 5.500984e-03	ci left: 1.120903e-01	ci right 1.127088e-01	k: 450721	n:4010000
KS ci ratio: 1.362977e-01	ci left: 1.921767e-04	ci right 2.205233e-04	k: 826	n:4010000
MTTP   4010000 perm   6936 sec   (578 perm/sec)   p_kst 2.059850e-04   p_cons 1.123993e-01   p_joint 4.635910e-04

Joint ci ratio: 9.166407e-02	ci left: 4.338789e-04	ci right 4.758013e-04	k: 1827	n:4020000
Cons ci ratio: 5.493864e-03	ci left: 1.121006e-01	ci right 1.127184e-01	k: 451885	n:4020000
KS ci ratio: 1.362154e-01	ci left: 1.919389e-04	ci right 2.202320e-04	k: 827	n:4020000
MTTP   4020000 perm   6969 sec   (577 perm/sec)   p_kst 2.057214e-04   p_cons 1.124092e-01   p_joint 4.544776e-04

Joint ci ratio: 9.156395e-02	ci left: 4.337721e-04	ci right 4.756359e-04	k: 1831	n:4030000
Cons ci ratio: 5.487154e-03	ci left: 1.120970e-01	ci right 1.127140e-01	k: 452993	n:4030000
KS ci ratio: 1.360512e-01	ci left: 1.919420e-04	ci right 2.201987e-04	k: 829	n:4030000
MTTP   4030000 perm   7001 sec   (576 perm/sec)   p_kst 2.057072e-04   p_cons 1.124052e-01   p_joint 4.543424e-04

Joint ci ratio: 9.146416e-02	ci left: 4.336659e-04	ci right 4.754714e-04	k: 1835	n:4040000
Cons ci ratio: 5.480508e-03	ci left: 1.120919e-01	ci right 1.127082e-01	k: 454095	n:4040000
KS ci ratio: 1.358875e-01	ci left: 1.919451e-04	ci right 2.201655e-04	k: 831	n:4040000
MTTP   4040000 perm   7034 sec   (574 perm/sec)   p_kst 2.056931e-04   p_cons 1.123998e-01   p_joint 4.542079e-04

Joint ci ratio: 9.131506e-02	ci left: 4.340427e-04	ci right 4.758127e-04	k: 1841	n:4050000
Cons ci ratio: 5.473440e-03	ci left: 1.121031e-01	ci right 1.127186e-01	k: 455263	n:4050000
KS ci ratio: 1.355620e-01	ci left: 1.924253e-04	ci right 2.206431e-04	k: 835	n:4050000
MTTP   4050000 perm   7067 sec   (573 perm/sec)   p_kst 2.061728e-04   p_cons 1.124106e-01   p_joint 4.545679e-04

Joint ci ratio: 9.116669e-02	ci left: 4.344178e-04	ci right 4.761523e-04	k: 1847	n:4060000
Cons ci ratio: 5.466844e-03	ci left: 1.120981e-01	ci right 1.127128e-01	k: 456365	n:4060000
KS ci ratio: 1.354002e-01	ci left: 1.924273e-04	ci right 2.206089e-04	k: 837	n:4060000
MTTP   4060000 perm   7099 sec   (572 perm/sec)   p_kst 2.061576e-04   p_cons 1.124052e-01   p_joint 4.549261e-04

Joint ci ratio: 9.109279e-02	ci left: 4.340707e-04	ci right 4.757363e-04	k: 1850	n:4070000
Cons ci ratio: 5.460017e-03	ci left: 1.121024e-01	ci right 1.127164e-01	k: 457505	n:4070000
KS ci ratio: 1.353195e-01	ci left: 1.921918e-04	ci right 2.203209e-04	k: 838	n:4070000
MTTP   4070000 perm   7132 sec   (571 perm/sec)   p_kst 2.058968e-04   p_cons 1.124091e-01   p_joint 4.545455e-04

Joint ci ratio: 9.104365e-02	ci left: 4.334858e-04	ci right 4.750716e-04	k: 1852	n:4080000
Cons ci ratio: 5.453302e-03	ci left: 1.121035e-01	ci right 1.127167e-01	k: 458632	n:4080000
KS ci ratio: 1.351585e-01	ci left: 1.921944e-04	ci right 2.202877e-04	k: 840	n:4080000
MTTP   4080000 perm   7165 sec   (569 perm/sec)   p_kst 2.058824e-04   p_cons 1.124098e-01   p_joint 4.539216e-04

Joint ci ratio: 9.092106e-02	ci left: 4.336206e-04	ci right 4.751604e-04	k: 1857	n:4090000
Cons ci ratio: 5.446766e-03	ci left: 1.120989e-01	ci right 1.127114e-01	k: 459736	n:4090000
KS ci ratio: 1.348382e-01	ci left: 1.926694e-04	ci right 2.207601e-04	k: 844	n:4090000
MTTP   4090000 perm   7197 sec   (568 perm/sec)   p_kst 2.063570e-04   p_cons 1.124049e-01   p_joint 4.540342e-04

Joint ci ratio: 9.079896e-02	ci left: 4.337548e-04	ci right 4.752487e-04	k: 1862	n:4100000
Cons ci ratio: 5.439940e-03	ci left: 1.121059e-01	ci right 1.127176e-01	k: 460887	n:4100000
KS ci ratio: 1.347585e-01	ci left: 1.924352e-04	ci right 2.204737e-04	k: 845	n:4100000
MTTP   4100000 perm   7230 sec   (567 perm/sec)   p_kst 2.060976e-04   p_cons 1.124115e-01   p_joint 4.541463e-04

Joint ci ratio: 9.067736e-02	ci left: 4.338884e-04	ci right 4.753365e-04	k: 1867	n:4110000
Cons ci ratio: 5.433412e-03	ci left: 1.121028e-01	ci right 1.127138e-01	k: 461997	n:4110000
KS ci ratio: 1.345994e-01	ci left: 1.924372e-04	ci right 2.204403e-04	k: 847	n:4110000
MTTP   4110000 perm   7263 sec   (566 perm/sec)   p_kst 2.060827e-04   p_cons 1.124080e-01   p_joint 4.542579e-04

Joint ci ratio: 9.060465e-02	ci left: 4.335469e-04	ci right 4.749274e-04	k: 1870	n:4120000
Cons ci ratio: 5.426946e-03	ci left: 1.120983e-01	ci right 1.127085e-01	k: 463101	n:4120000
KS ci ratio: 1.344410e-01	ci left: 1.924392e-04	ci right 2.204070e-04	k: 849	n:4120000
MTTP   4120000 perm   7296 sec   (565 perm/sec)   p_kst 2.060680e-04   p_cons 1.124032e-01   p_joint 4.538835e-04

Joint ci ratio: 9.053212e-02	ci left: 4.332071e-04	ci right 4.745203e-04	k: 1873	n:4130000
Cons ci ratio: 5.420260e-03	ci left: 1.121028e-01	ci right 1.127123e-01	k: 464242	n:4130000
KS ci ratio: 1.342044e-01	ci left: 1.926753e-04	ci right 2.206241e-04	k: 852	n:4130000
MTTP   4130000 perm   7329 sec   (564 perm/sec)   p_kst 2.062954e-04   p_cons 1.124073e-01   p_joint 4.535109e-04

Joint ci ratio: 9.153952e-02	ci left: 4.224827e-04	ci right 4.632455e-04	k: 1832	n:4140000
Cons ci ratio: 5.413757e-03	ci left: 1.121014e-01	ci right 1.127102e-01	k: 465359	n:4140000
KS ci ratio: 1.339690e-01	ci left: 1.929102e-04	ci right 2.208402e-04	k: 855	n:4140000
MTTP   4140000 perm   7362 sec   (562 perm/sec)   p_kst 2.065217e-04   p_cons 1.124056e-01   p_joint 4.425121e-04

Joint ci ratio: 9.139005e-02	ci left: 4.228774e-04	ci right 4.636081e-04	k: 1838	n:4150000
Cons ci ratio: 5.407400e-03	ci left: 1.120955e-01	ci right 1.127036e-01	k: 466457	n:4150000
KS ci ratio: 1.338908e-01	ci left: 1.926782e-04	ci right 2.205570e-04	k: 856	n:4150000
MTTP   4150000 perm   7395 sec   (561 perm/sec)   p_kst 2.062651e-04   p_cons 1.123993e-01   p_joint 4.428916e-04

Joint ci ratio: 9.134042e-02	ci left: 4.223306e-04	ci right 4.629854e-04	k: 1840	n:4160000
Cons ci ratio: 5.400878e-03	ci left: 1.120966e-01	ci right 1.127039e-01	k: 467584	n:4160000
KS ci ratio: 1.338908e-01	ci left: 1.922151e-04	ci right 2.200269e-04	k: 856	n:4160000
MTTP   4160000 perm   7428 sec   (560 perm/sec)   p_kst 2.057692e-04   p_cons 1.124000e-01   p_joint 4.423077e-04

Joint ci ratio: 9.121663e-02	ci left: 4.224895e-04	ci right 4.631015e-04	k: 1845	n:4170000
Cons ci ratio: 5.394495e-03	ci left: 1.120934e-01	ci right 1.126999e-01	k: 468693	n:4170000
KS ci ratio: 1.335019e-01	ci left: 1.929131e-04	ci right 2.207383e-04	k: 861	n:4170000
MTTP   4170000 perm   7462 sec   (559 perm/sec)   p_kst 2.064748e-04   p_cons 1.123964e-01   p_joint 4.424460e-04

Joint ci ratio: 9.109334e-02	ci left: 4.226477e-04	ci right 4.632170e-04	k: 1850	n:4180000
Cons ci ratio: 5.387941e-03	ci left: 1.120974e-01	ci right 1.127032e-01	k: 469832	n:4180000
KS ci ratio: 1.333473e-01	ci left: 1.929140e-04	ci right 2.207047e-04	k: 863	n:4180000
MTTP   4180000 perm   7495 sec   (558 perm/sec)   p_kst 2.064593e-04   p_cons 1.124000e-01   p_joint 4.425837e-04

Joint ci ratio: 9.089709e-02	ci left: 4.235048e-04	ci right 4.640642e-04	k: 1858	n:4190000
Cons ci ratio: 5.381553e-03	ci left: 1.120960e-01	ci right 1.127012e-01	k: 470949	n:4190000
KS ci ratio: 1.328866e-01	ci left: 1.938379e-04	ci right 2.216576e-04	k: 869	n:4190000
MTTP   4190000 perm   7529 sec   (557 perm/sec)   p_kst 2.073986e-04   p_cons 1.123983e-01   p_joint 4.434368e-04

Joint ci ratio: 9.077509e-02	ci left: 4.236599e-04	ci right 4.641768e-04	k: 1863	n:4200000
Cons ci ratio: 5.374931e-03	ci left: 1.121043e-01	ci right 1.127087e-01	k: 472106	n:4200000
KS ci ratio: 1.327342e-01	ci left: 1.938368e-04	ci right 2.216218e-04	k: 871	n:4200000
MTTP   4200000 perm   7563 sec   (555 perm/sec)   p_kst 2.073810e-04   p_cons 1.124062e-01   p_joint 4.435714e-04

Joint ci ratio: 9.065358e-02	ci left: 4.238143e-04	ci right 4.642888e-04	k: 1868	n:4210000
Cons ci ratio: 5.368895e-03	ci left: 1.120916e-01	ci right 1.126952e-01	k: 473175	n:4210000
KS ci ratio: 1.324307e-01	ci left: 1.942950e-04	ci right 2.220770e-04	k: 875	n:4210000
MTTP   4210000 perm   7597 sec   (554 perm/sec)   p_kst 2.078385e-04   p_cons 1.123931e-01   p_joint 4.437055e-04

Joint ci ratio: 9.084835e-02	ci left: 4.209573e-04	ci right 4.612499e-04	k: 1860	n:4220000
Cons ci ratio: 5.362702e-03	ci left: 1.120855e-01	ci right 1.126885e-01	k: 474272	n:4220000
KS ci ratio: 1.323552e-01	ci left: 1.940637e-04	ci right 2.217956e-04	k: 876	n:4220000
MTTP   4220000 perm   7631 sec   (553 perm/sec)   p_kst 2.075829e-04   p_cons 1.123867e-01   p_joint 4.407583e-04

Joint ci ratio: 9.075088e-02	ci left: 4.208863e-04	ci right 4.611266e-04	k: 1864	n:4230000
Cons ci ratio: 5.356295e-03	ci left: 1.120883e-01	ci right 1.126905e-01	k: 475406	n:4230000
KS ci ratio: 1.320544e-01	ci left: 1.945192e-04	ci right 2.222481e-04	k: 880	n:4230000
MTTP   4230000 perm   7665 sec   (552 perm/sec)   p_kst 2.080378e-04   p_cons 1.123891e-01   p_joint 4.406619e-04

Joint ci ratio: 9.055682e-02	ci left: 4.217376e-04	ci right 4.619686e-04	k: 1872	n:4240000
Cons ci ratio: 5.350158e-03	ci left: 1.120818e-01	ci right 1.126833e-01	k: 476501	n:4240000
KS ci ratio: 1.318301e-01	ci left: 1.947447e-04	ci right 2.224548e-04	k: 883	n:4240000
MTTP   4240000 perm   7699 sec   (551 perm/sec)   p_kst 2.082547e-04   p_cons 1.123823e-01   p_joint 4.415094e-04

Joint ci ratio: 9.048440e-02	ci left: 4.214352e-04	ci right 4.616034e-04	k: 1875	n:4250000
Cons ci ratio: 5.343474e-03	ci left: 1.120966e-01	ci right 1.126974e-01	k: 477686	n:4250000
KS ci ratio: 1.317556e-01	ci left: 1.945140e-04	ci right 2.221745e-04	k: 884	n:4250000
MTTP   4250000 perm   7733 sec   (550 perm/sec)   p_kst 2.080000e-04   p_cons 1.123967e-01   p_joint 4.411765e-04

Joint ci ratio: 9.046033e-02	ci left: 4.206753e-04	ci right 4.607599e-04	k: 1876	n:4260000
Cons ci ratio: 5.337180e-03	ci left: 1.120976e-01	ci right 1.126977e-01	k: 478813	n:4260000
KS ci ratio: 1.316813e-01	ci left: 1.942844e-04	ci right 2.218954e-04	k: 885	n:4260000
MTTP   4260000 perm   7768 sec   (548 perm/sec)   p_kst 2.077465e-04   p_cons 1.123974e-01   p_joint 4.403756e-04

Joint ci ratio: 8.104847e-02	ci left: 5.253455e-04	ci right 5.699499e-04	k: 2337	n:4270000
Cons ci ratio: 5.330826e-03	ci left: 1.121017e-01	ci right 1.127011e-01	k: 479953	n:4270000
KS ci ratio: 1.314589e-01	ci left: 1.945088e-04	ci right 2.221014e-04	k: 888	n:4270000
MTTP   4270000 perm   7802 sec   (547 perm/sec)   p_kst 2.079625e-04   p_cons 1.124012e-01   p_joint 5.473068e-04

Joint ci ratio: 8.152086e-02	ci left: 5.179378e-04	ci right 5.621817e-04	k: 2310	n:4280000
Cons ci ratio: 5.324502e-03	ci left: 1.121056e-01	ci right 1.127043e-01	k: 481092	n:4280000
KS ci ratio: 1.308713e-01	ci left: 1.958622e-04	ci right 2.235129e-04	k: 896	n:4280000
MTTP   4280000 perm   7837 sec   (546 perm/sec)   p_kst 2.093458e-04   p_cons 1.124047e-01   p_joint 5.397196e-04

Joint ci ratio: 8.150327e-02	ci left: 5.169589e-04	ci right 5.611091e-04	k: 2311	n:4290000
Cons ci ratio: 5.318460e-03	ci left: 1.120996e-01	ci right 1.126976e-01	k: 482189	n:4290000
KS ci ratio: 1.308713e-01	ci left: 1.954057e-04	ci right 2.229919e-04	k: 896	n:4290000
MTTP   4290000 perm   7872 sec   (545 perm/sec)   p_kst 2.088578e-04   p_cons 1.123984e-01   p_joint 5.386946e-04

Joint ci ratio: 8.139771e-02	ci left: 5.171236e-04	ci right 5.612280e-04	k: 2317	n:4300000
Cons ci ratio: 5.312241e-03	ci left: 1.121011e-01	ci right 1.126985e-01	k: 483318	n:4300000
KS ci ratio: 1.306530e-01	ci left: 1.956261e-04	ci right 2.231938e-04	k: 899	n:4300000
MTTP   4300000 perm   7907 sec   (544 perm/sec)   p_kst 2.090698e-04   p_cons 1.123995e-01   p_joint 5.388372e-04

Joint ci ratio: 8.136265e-02	ci left: 5.163783e-04	ci right 5.603993e-04	k: 2319	n:4310000
Cons ci ratio: 5.306451e-03	ci left: 1.120873e-01	ci right 1.126839e-01	k: 484381	n:4310000
KS ci ratio: 1.306530e-01	ci left: 1.951722e-04	ci right 2.226760e-04	k: 899	n:4310000
MTTP   4310000 perm   7942 sec   (543 perm/sec)   p_kst 2.085847e-04   p_cons 1.123854e-01   p_joint 5.380510e-04

Joint ci ratio: 8.120526e-02	ci left: 5.172240e-04	ci right 5.612277e-04	k: 2328	n:4320000
Cons ci ratio: 5.300158e-03	ci left: 1.120933e-01	ci right 1.126892e-01	k: 485529	n:4320000
KS ci ratio: 1.305081e-01	ci left: 1.951682e-04	ci right 2.226386e-04	k: 901	n:4320000
MTTP   4320000 perm   7977 sec   (542 perm/sec)   p_kst 2.085648e-04   p_cons 1.123910e-01   p_joint 5.388889e-04

Joint ci ratio: 8.176930e-02	ci left: 5.087897e-04	ci right 5.523908e-04	k: 2296	n:4330000
Cons ci ratio: 5.294211e-03	ci left: 1.120870e-01	ci right 1.126822e-01	k: 486624	n:4330000
KS ci ratio: 1.304358e-01	ci left: 1.949409e-04	ci right 2.223629e-04	k: 902	n:4330000
MTTP   4330000 perm   8011 sec   (540 perm/sec)   p_kst 2.083141e-04   p_cons 1.123843e-01   p_joint 5.302540e-04

Joint ci ratio: 8.168046e-02	ci left: 5.087459e-04	ci right 5.522937e-04	k: 2301	n:4340000
Cons ci ratio: 5.287979e-03	ci left: 1.120922e-01	ci right 1.126867e-01	k: 487769	n:4340000
KS ci ratio: 1.303637e-01	ci left: 1.947146e-04	ci right 2.220885e-04	k: 903	n:4340000
MTTP   4340000 perm   8045 sec   (539 perm/sec)   p_kst 2.080645e-04   p_cons 1.123892e-01   p_joint 5.301843e-04

Joint ci ratio: 8.152122e-02	ci left: 5.096031e-04	ci right 5.531352e-04	k: 2310	n:4350000
Cons ci ratio: 5.281726e-03	ci left: 1.120990e-01	ci right 1.126928e-01	k: 488921	n:4350000
KS ci ratio: 1.300046e-01	ci left: 1.953790e-04	ci right 2.227648e-04	k: 908	n:4350000
MTTP   4350000 perm   8080 sec   (538 perm/sec)   p_kst 2.087356e-04   p_cons 1.123956e-01   p_joint 5.310345e-04

Joint ci ratio: 8.145077e-02	ci left: 5.093330e-04	ci right 5.528026e-04	k: 2314	n:4360000
Cons ci ratio: 5.275441e-03	ci left: 1.121078e-01	ci right 1.127010e-01	k: 490082	n:4360000
KS ci ratio: 1.300046e-01	ci left: 1.949309e-04	ci right 2.222538e-04	k: 908	n:4360000
MTTP   4360000 perm   8116 sec   (537 perm/sec)   p_kst 2.082569e-04   p_cons 1.124041e-01   p_joint 5.307339e-04

Joint ci ratio: 8.214606e-02	ci left: 4.994255e-04	ci right 5.424308e-04	k: 2275	n:4370000
Cons ci ratio: 5.269366e-03	ci left: 1.121095e-01	ci right 1.127020e-01	k: 491212	n:4370000
KS ci ratio: 1.297906e-01	ci left: 1.951490e-04	ci right 2.224541e-04	k: 911	n:4370000
MTTP   4370000 perm   8151 sec   (536 perm/sec)   p_kst 2.084668e-04   p_cons 1.124055e-01   p_joint 5.205950e-04

Joint ci ratio: 8.211003e-02	ci left: 4.987325e-04	ci right 5.416584e-04	k: 2277	n:4380000
Cons ci ratio: 5.263058e-03	ci left: 1.121208e-01	ci right 1.127126e-01	k: 492384	n:4380000
KS ci ratio: 1.297906e-01	ci left: 1.947035e-04	ci right 2.219462e-04	k: 911	n:4380000
MTTP   4380000 perm   8186 sec   (535 perm/sec)   p_kst 2.079909e-04   p_cons 1.124164e-01   p_joint 5.198630e-04

Joint ci ratio: 8.203804e-02	ci left: 4.984889e-04	ci right 5.413544e-04	k: 2281	n:4390000
Cons ci ratio: 5.257002e-03	ci left: 1.121233e-01	ci right 1.127145e-01	k: 493518	n:4390000
KS ci ratio: 1.295069e-01	ci left: 1.951416e-04	ci right 2.223813e-04	k: 915	n:4390000
MTTP   4390000 perm   8221 sec   (534 perm/sec)   p_kst 2.084282e-04   p_cons 1.124187e-01   p_joint 5.195900e-04

Joint ci ratio: 8.182313e-02	ci left: 5.000273e-04	ci right 5.429071e-04	k: 2293	n:4400000
Cons ci ratio: 5.251193e-03	ci left: 1.121173e-01	ci right 1.127078e-01	k: 494614	n:4400000
KS ci ratio: 1.291549e-01	ci left: 1.957977e-04	ci right 2.230490e-04	k: 920	n:4400000
MTTP   4400000 perm   8257 sec   (533 perm/sec)   p_kst 2.090909e-04   p_cons 1.124123e-01   p_joint 5.211364e-04

Joint ci ratio: 8.176970e-02	ci left: 4.995598e-04	ci right 5.423702e-04	k: 2296	n:4410000
Cons ci ratio: 5.245201e-03	ci left: 1.121189e-01	ci right 1.127088e-01	k: 495744	n:4410000
KS ci ratio: 1.289450e-01	ci left: 1.960120e-04	ci right 2.232454e-04	k: 923	n:4410000
MTTP   4410000 perm   8292 sec   (532 perm/sec)   p_kst 2.092971e-04   p_cons 1.124136e-01   p_joint 5.206349e-04

Joint ci ratio: 8.169860e-02	ci left: 4.993161e-04	ci right 5.420666e-04	k: 2300	n:4420000
Cons ci ratio: 5.239015e-03	ci left: 1.121287e-01	ci right 1.127179e-01	k: 496910	n:4420000
KS ci ratio: 1.288057e-01	ci left: 1.960064e-04	ci right 2.232074e-04	k: 925	n:4420000
MTTP   4420000 perm   8328 sec   (531 perm/sec)   p_kst 2.092760e-04   p_cons 1.124231e-01   p_joint 5.203620e-04

Joint ci ratio: 8.175199e-02	ci left: 4.975256e-04	ci right 5.401520e-04	k: 2297	n:4430000
Cons ci ratio: 5.232946e-03	ci left: 1.121349e-01	ci right 1.127234e-01	k: 498060	n:4430000
KS ci ratio: 1.284593e-01	ci left: 1.966563e-04	ci right 2.238685e-04	k: 930	n:4430000
MTTP   4430000 perm   8363 sec   (530 perm/sec)   p_kst 2.099323e-04   p_cons 1.124289e-01   p_joint 5.185102e-04

Joint ci ratio: 8.161003e-02	ci left: 4.981700e-04	ci right 5.407740e-04	k: 2305	n:4440000
Cons ci ratio: 5.227300e-03	ci left: 1.121257e-01	ci right 1.127136e-01	k: 499142	n:4440000
KS ci ratio: 1.283215e-01	ci left: 1.966494e-04	ci right 2.238292e-04	k: 932	n:4440000
MTTP   4440000 perm   8399 sec   (529 perm/sec)   p_kst 2.099099e-04   p_cons 1.124194e-01   p_joint 5.191441e-04

Joint ci ratio: 8.152170e-02	ci left: 4.981512e-04	ci right 5.407053e-04	k: 2310	n:4450000
Cons ci ratio: 5.221348e-03	ci left: 1.121289e-01	ci right 1.127161e-01	k: 500279	n:4450000
KS ci ratio: 1.280473e-01	ci left: 1.970775e-04	ci right 2.242539e-04	k: 936	n:4450000
MTTP   4450000 perm   8435 sec   (528 perm/sec)   p_kst 2.103371e-04   p_cons 1.124222e-01   p_joint 5.191011e-04

Joint ci ratio: 8.145125e-02	ci left: 4.979129e-04	ci right 5.404081e-04	k: 2314	n:4460000
Cons ci ratio: 5.215457e-03	ci left: 1.121305e-01	ci right 1.127171e-01	k: 501409	n:4460000
KS ci ratio: 1.279791e-01	ci left: 1.968527e-04	ci right 2.239825e-04	k: 937	n:4460000
MTTP   4460000 perm   8471 sec   (526 perm/sec)   p_kst 2.100897e-04   p_cons 1.124235e-01   p_joint 5.188341e-04

Joint ci ratio: 8.141612e-02	ci left: 4.972373e-04	ci right 5.396557e-04	k: 2316	n:4470000
Cons ci ratio: 5.209604e-03	ci left: 1.121315e-01	ci right 1.127174e-01	k: 502536	n:4470000
KS ci ratio: 1.279791e-01	ci left: 1.964123e-04	ci right 2.234814e-04	k: 937	n:4470000
MTTP   4470000 perm   8507 sec   (525 perm/sec)   p_kst 2.096197e-04   p_cons 1.124242e-01   p_joint 5.181208e-04

Joint ci ratio: 8.122349e-02	ci left: 4.985328e-04	ci right 5.409563e-04	k: 2327	n:4480000
Cons ci ratio: 5.203875e-03	ci left: 1.121284e-01	ci right 1.127136e-01	k: 503645	n:4480000
KS ci ratio: 1.275041e-01	ci left: 1.974865e-04	ci right 2.245950e-04	k: 944	n:4480000
MTTP   4480000 perm   8542 sec   (524 perm/sec)   p_kst 2.107143e-04   p_cons 1.124208e-01   p_joint 5.194196e-04

Joint ci ratio: 8.115381e-02	ci left: 4.982953e-04	ci right 5.406605e-04	k: 2331	n:4490000
Cons ci ratio: 5.198037e-03	ci left: 1.121302e-01	ci right 1.127148e-01	k: 504776	n:4490000
KS ci ratio: 1.273694e-01	ci left: 1.974779e-04	ci right 2.245544e-04	k: 946	n:4490000
MTTP   4490000 perm   8578 sec   (523 perm/sec)   p_kst 2.106904e-04   p_cons 1.124223e-01   p_joint 5.191537e-04

Joint ci ratio: 8.347835e-02	ci left: 4.693286e-04	ci right 5.104297e-04	k: 2203	n:4500000
Cons ci ratio: 5.192081e-03	ci left: 1.121374e-01	ci right 1.127213e-01	k: 505931	n:4500000
KS ci ratio: 1.272352e-01	ci left: 1.974693e-04	ci right 2.245140e-04	k: 948	n:4500000
MTTP   4500000 perm   8615 sec   (522 perm/sec)   p_kst 2.106667e-04   p_cons 1.124291e-01   p_joint 4.895556e-04

Joint ci ratio: 8.328956e-02	ci left: 4.704591e-04	ci right 5.115614e-04	k: 2213	n:4510000
Cons ci ratio: 5.186219e-03	ci left: 1.121416e-01	ci right 1.127249e-01	k: 507073	n:4510000
KS ci ratio: 1.269012e-01	ci left: 1.981049e-04	ci right 2.251600e-04	k: 953	n:4510000
MTTP   4510000 perm   8651 sec   (521 perm/sec)   p_kst 2.113082e-04   p_cons 1.124330e-01   p_joint 4.906874e-04

Joint ci ratio: 8.319567e-02	ci left: 4.705014e-04	ci right 5.115588e-04	k: 2218	n:4520000
Cons ci ratio: 5.180337e-03	ci left: 1.121474e-01	ci right 1.127301e-01	k: 508222	n:4520000
KS ci ratio: 1.267022e-01	ci left: 1.983093e-04	ci right 2.253466e-04	k: 956	n:4520000
MTTP   4520000 perm   8688 sec   (520 perm/sec)   p_kst 2.115044e-04   p_cons 1.124385e-01   p_joint 4.907080e-04

Joint ci ratio: 8.304608e-02	ci left: 4.711921e-04	ci right 5.122323e-04	k: 2226	n:4530000
Cons ci ratio: 5.174252e-03	ci left: 1.121618e-01	ci right 1.127438e-01	k: 509410	n:4530000
KS ci ratio: 1.265040e-01	ci left: 1.985128e-04	ci right 2.255324e-04	k: 959	n:4530000
MTTP   4530000 perm   8724 sec   (519 perm/sec)   p_kst 2.116998e-04   p_cons 1.124525e-01   p_joint 4.913907e-04

Joint ci ratio: 8.295301e-02	ci left: 4.712327e-04	ci right 5.122282e-04	k: 2231	n:4540000
Cons ci ratio: 5.168879e-03	ci left: 1.121494e-01	ci right 1.127308e-01	k: 510477	n:4540000
KS ci ratio: 1.264382e-01	ci left: 1.982888e-04	ci right 2.252629e-04	k: 960	n:4540000
MTTP   4540000 perm   8761 sec   (518 perm/sec)   p_kst 2.114537e-04   p_cons 1.124399e-01   p_joint 4.914097e-04

Joint ci ratio: 8.286025e-02	ci left: 4.712731e-04	ci right 5.122241e-04	k: 2236	n:4550000
Cons ci ratio: 5.163471e-03	ci left: 1.121391e-01	ci right 1.127198e-01	k: 511553	n:4550000
KS ci ratio: 1.263069e-01	ci left: 1.982787e-04	ci right 2.252212e-04	k: 962	n:4550000
MTTP   4550000 perm   8798 sec   (517 perm/sec)   p_kst 2.114286e-04   p_cons 1.124292e-01   p_joint 4.914286e-04

Joint ci ratio: 8.282326e-02	ci left: 4.706691e-04	ci right 5.115485e-04	k: 2238	n:4560000
Cons ci ratio: 5.157819e-03	ci left: 1.121389e-01	ci right 1.127190e-01	k: 512675	n:4560000
KS ci ratio: 1.263069e-01	ci left: 1.978439e-04	ci right 2.247273e-04	k: 962	n:4560000
MTTP   4560000 perm   8835 sec   (516 perm/sec)   p_kst 2.109649e-04   p_cons 1.124287e-01   p_joint 4.907895e-04

Joint ci ratio: 8.271250e-02	ci left: 4.709249e-04	ci right 5.117692e-04	k: 2244	n:4570000
Cons ci ratio: 5.152152e-03	ci left: 1.121401e-01	ci right 1.127195e-01	k: 513803	n:4570000
KS ci ratio: 1.259802e-01	ci left: 1.984705e-04	ci right 2.253642e-04	k: 967	n:4570000
MTTP   4570000 perm   8872 sec   (515 perm/sec)   p_kst 2.115974e-04   p_cons 1.124295e-01   p_joint 4.910284e-04

Joint ci ratio: 8.260218e-02	ci left: 4.711797e-04	ci right 5.119889e-04	k: 2250	n:4580000
Cons ci ratio: 5.146571e-03	ci left: 1.121386e-01	ci right 1.127174e-01	k: 514919	n:4580000
KS ci ratio: 1.257854e-01	ci left: 1.986716e-04	ci right 2.255477e-04	k: 970	n:4580000
MTTP   4580000 perm   8909 sec   (514 perm/sec)   p_kst 2.117904e-04   p_cons 1.124277e-01   p_joint 4.912664e-04

Joint ci ratio: 8.249230e-02	ci left: 4.714334e-04	ci right 5.122076e-04	k: 2256	n:4590000
Cons ci ratio: 5.140862e-03	ci left: 1.121427e-01	ci right 1.127209e-01	k: 516061	n:4590000
KS ci ratio: 1.255916e-01	ci left: 1.988718e-04	ci right 2.257305e-04	k: 973	n:4590000
MTTP   4590000 perm   8945 sec   (513 perm/sec)   p_kst 2.119826e-04   p_cons 1.124316e-01   p_joint 4.915033e-04

Joint ci ratio: 8.252894e-02	ci left: 4.699827e-04	ci right 5.106504e-04	k: 2254	n:4600000
Cons ci ratio: 5.135323e-03	ci left: 1.121410e-01	ci right 1.127186e-01	k: 517176	n:4600000
KS ci ratio: 1.254628e-01	ci left: 1.988606e-04	ci right 2.256882e-04	k: 975	n:4600000
MTTP   4600000 perm   8982 sec   (512 perm/sec)   p_kst 2.119565e-04   p_cons 1.124296e-01   p_joint 4.900000e-04

Joint ci ratio: 8.240113e-02	ci left: 4.704503e-04	ci right 5.110924e-04	k: 2261	n:4610000
Cons ci ratio: 5.129802e-03	ci left: 1.121393e-01	ci right 1.127163e-01	k: 518291	n:4610000
KS ci ratio: 1.251426e-01	ci left: 1.994798e-04	ci right 2.263172e-04	k: 980	n:4610000
MTTP   4610000 perm   9019 sec   (511 perm/sec)   p_kst 2.125813e-04   p_cons 1.124275e-01   p_joint 4.904555e-04

Joint ci ratio: 8.234655e-02	ci left: 4.700680e-04	ci right 5.106489e-04	k: 2264	n:4620000
Cons ci ratio: 5.124466e-03	ci left: 1.121311e-01	ci right 1.127074e-01	k: 519376	n:4620000
KS ci ratio: 1.251427e-01	ci left: 1.990480e-04	ci right 2.258273e-04	k: 980	n:4620000
MTTP   4620000 perm   9057 sec   (510 perm/sec)   p_kst 2.121212e-04   p_cons 1.124190e-01   p_joint 4.900433e-04

Joint ci ratio: 8.221958e-02	ci left: 4.705335e-04	ci right 5.110889e-04	k: 2271	n:4630000
Cons ci ratio: 5.119312e-03	ci left: 1.121165e-01	ci right 1.126922e-01	k: 520431	n:4630000
KS ci ratio: 1.249517e-01	ci left: 1.992458e-04	ci right 2.260078e-04	k: 983	n:4630000
MTTP   4630000 perm   9094 sec   (509 perm/sec)   p_kst 2.123110e-04   p_cons 1.124041e-01   p_joint 4.904968e-04

Joint ci ratio: 8.211122e-02	ci left: 4.707860e-04	ci right 5.113071e-04	k: 2277	n:4640000
Cons ci ratio: 5.113583e-03	ci left: 1.121250e-01	ci right 1.127000e-01	k: 521593	n:4640000
KS ci ratio: 1.248250e-01	ci left: 1.992340e-04	ci right 2.259652e-04	k: 985	n:4640000
MTTP   4640000 perm   9131 sec   (508 perm/sec)   p_kst 2.122845e-04   p_cons 1.124123e-01   p_joint 4.907328e-04

Joint ci ratio: 8.200329e-02	ci left: 4.710374e-04	ci right 5.115243e-04	k: 2283	n:4650000
Cons ci ratio: 5.107956e-03	ci left: 1.121302e-01	ci right 1.127047e-01	k: 522740	n:4650000
KS ci ratio: 1.247617e-01	ci left: 1.990138e-04	ci right 2.257010e-04	k: 986	n:4650000
MTTP   4650000 perm   9169 sec   (507 perm/sec)   p_kst 2.120430e-04   p_cons 1.124172e-01   p_joint 4.909677e-04

Joint ci ratio: 8.196744e-02	ci left: 4.704469e-04	ci right 5.108646e-04	k: 2285	n:4660000
Cons ci ratio: 5.102221e-03	ci left: 1.121404e-01	ci right 1.127142e-01	k: 523910	n:4660000
KS ci ratio: 1.246355e-01	ci left: 1.990026e-04	ci right 2.256593e-04	k: 988	n:4660000
MTTP   4660000 perm   9207 sec   (506 perm/sec)   p_kst 2.120172e-04   p_cons 1.124270e-01   p_joint 4.903433e-04

Joint ci ratio: 8.395684e-02	ci left: 4.470024e-04	ci right 4.863836e-04	k: 2178	n:4670000
Cons ci ratio: 5.096757e-03	ci left: 1.121406e-01	ci right 1.127138e-01	k: 525034	n:4670000
KS ci ratio: 1.245097e-01	ci left: 1.989914e-04	ci right 2.256176e-04	k: 990	n:4670000
MTTP   4670000 perm   9244 sec   (505 perm/sec)   p_kst 2.119914e-04   p_cons 1.124270e-01   p_joint 4.663812e-04

Joint ci ratio: 8.391836e-02	ci left: 4.464656e-04	ci right 4.857806e-04	k: 2180	n:4680000
Cons ci ratio: 5.091103e-03	ci left: 1.121490e-01	ci right 1.127216e-01	k: 526196	n:4680000
KS ci ratio: 1.243842e-01	ci left: 1.989802e-04	ci right 2.255762e-04	k: 992	n:4680000
MTTP   4680000 perm   9282 sec   (504 perm/sec)   p_kst 2.119658e-04   p_cons 1.124350e-01   p_joint 4.658120e-04

Joint ci ratio: 8.428651e-02	ci left: 4.415477e-04	ci right 4.806086e-04	k: 2161	n:4690000
Cons ci ratio: 5.085582e-03	ci left: 1.121528e-01	ci right 1.127248e-01	k: 527337	n:4690000
KS ci ratio: 1.241344e-01	ci left: 1.993823e-04	ci right 2.259746e-04	k: 996	n:4690000
MTTP   4690000 perm   9320 sec   (503 perm/sec)   p_kst 2.123667e-04   p_cons 1.124386e-01   p_joint 4.607676e-04

Joint ci ratio: 8.407284e-02	ci left: 4.428994e-04	ci right 4.819756e-04	k: 2172	n:4700000
Cons ci ratio: 5.080144e-03	ci left: 1.121541e-01	ci right 1.127255e-01	k: 528466	n:4700000
KS ci ratio: 1.238243e-01	ci left: 1.999889e-04	ci right 2.265906e-04	k: 1001	n:4700000
MTTP   4700000 perm   9358 sec   (502 perm/sec)   p_kst 2.129787e-04   p_cons 1.124396e-01   p_joint 4.621277e-04

Joint ci ratio: 8.395700e-02	ci left: 4.432062e-04	ci right 4.822530e-04	k: 2178	n:4710000
Cons ci ratio: 5.074426e-03	ci left: 1.121671e-01	ci right 1.127379e-01	k: 529650	n:4710000
KS ci ratio: 1.237009e-01	ci left: 1.999758e-04	ci right 2.265473e-04	k: 1003	n:4710000
MTTP   4710000 perm   9396 sec   (501 perm/sec)   p_kst 2.129512e-04   p_cons 1.124522e-01   p_joint 4.624204e-04

Joint ci ratio: 8.391852e-02	ci left: 4.426820e-04	ci right 4.816639e-04	k: 2180	n:4720000
Cons ci ratio: 5.069121e-03	ci left: 1.121645e-01	ci right 1.127347e-01	k: 530761	n:4720000
KS ci ratio: 1.236394e-01	ci left: 1.997575e-04	ci right 2.262857e-04	k: 1004	n:4720000
MTTP   4720000 perm   9433 sec   (500 perm/sec)   p_kst 2.127119e-04   p_cons 1.124494e-01   p_joint 4.618644e-04

Joint ci ratio: 8.380332e-02	ci left: 4.429880e-04	ci right 4.819407e-04	k: 2186	n:4730000
Cons ci ratio: 5.064186e-03	ci left: 1.121480e-01	ci right 1.127176e-01	k: 531806	n:4730000
KS ci ratio: 1.233940e-01	ci left: 2.001547e-04	ci right 2.266791e-04	k: 1008	n:4730000
MTTP   4730000 perm   9472 sec   (499 perm/sec)   p_kst 2.131078e-04   p_cons 1.124326e-01   p_joint 4.621564e-04

Joint ci ratio: 8.376505e-02	ci left: 4.424665e-04	ci right 4.813547e-04	k: 2188	n:4740000
Cons ci ratio: 5.058902e-03	ci left: 1.121459e-01	ci right 1.127149e-01	k: 532919	n:4740000
KS ci ratio: 1.233940e-01	ci left: 1.997324e-04	ci right 2.262009e-04	k: 1008	n:4740000
MTTP   4740000 perm   9509 sec   (498 perm/sec)   p_kst 2.126582e-04   p_cons 1.124302e-01   p_joint 4.616034e-04

Joint ci ratio: 8.368862e-02	ci left: 4.423595e-04	ci right 4.812010e-04	k: 2192	n:4750000
Cons ci ratio: 5.053469e-03	ci left: 1.121504e-01	ci right 1.127187e-01	k: 534063	n:4750000
KS ci ratio: 1.232719e-01	ci left: 1.997200e-04	ci right 2.261587e-04	k: 1010	n:4750000
MTTP   4750000 perm   9548 sec   (498 perm/sec)   p_kst 2.126316e-04   p_cons 1.124343e-01   p_joint 4.614737e-04

Joint ci ratio: 8.355536e-02	ci left: 4.428700e-04	ci right 4.816915e-04	k: 2199	n:4760000
Cons ci ratio: 5.048282e-03	ci left: 1.121458e-01	ci right 1.127135e-01	k: 535164	n:4760000
KS ci ratio: 1.230288e-01	ci left: 2.001148e-04	ci right 2.265498e-04	k: 1014	n:4760000
MTTP   4760000 perm   9586 sec   (497 perm/sec)   p_kst 2.130252e-04   p_cons 1.124294e-01   p_joint 4.619748e-04

Joint ci ratio: 8.347951e-02	ci left: 4.427626e-04	ci right 4.815377e-04	k: 2203	n:4770000
Cons ci ratio: 5.042893e-03	ci left: 1.121498e-01	ci right 1.127170e-01	k: 536306	n:4770000
KS ci ratio: 1.229682e-01	ci left: 1.998985e-04	ci right 2.262909e-04	k: 1015	n:4770000
MTTP   4770000 perm   9624 sec   (496 perm/sec)   p_kst 2.127883e-04   p_cons 1.124331e-01   p_joint 4.618449e-04

Joint ci ratio: 8.338497e-02	ci left: 4.428605e-04	ci right 4.815981e-04	k: 2208	n:4780000
Cons ci ratio: 5.037718e-03	ci left: 1.121460e-01	ci right 1.127126e-01	k: 537411	n:4780000
KS ci ratio: 1.226667e-01	ci left: 2.004942e-04	ci right 2.268957e-04	k: 1020	n:4780000
MTTP   4780000 perm   9662 sec   (495 perm/sec)   p_kst 2.133891e-04   p_cons 1.124291e-01   p_joint 4.619247e-04

Joint ci ratio: 8.336614e-02	ci left: 4.421404e-04	ci right 4.808058e-04	k: 2209	n:4790000
Cons ci ratio: 5.032216e-03	ci left: 1.121558e-01	ci right 1.127219e-01	k: 538581	n:4790000
KS ci ratio: 1.226668e-01	ci left: 2.000756e-04	ci right 2.264220e-04	k: 1020	n:4790000
MTTP   4790000 perm   9701 sec   (494 perm/sec)   p_kst 2.129436e-04   p_cons 1.124386e-01   p_joint 4.611691e-04

Joint ci ratio: 8.327199e-02	ci left: 4.422392e-04	ci right 4.808675e-04	k: 2214	n:4800000
Cons ci ratio: 5.026784e-03	ci left: 1.121636e-01	ci right 1.127290e-01	k: 539741	n:4800000
KS ci ratio: 1.225468e-01	ci left: 2.000627e-04	ci right 2.263797e-04	k: 1022	n:4800000
MTTP   4800000 perm   9740 sec   (493 perm/sec)   p_kst 2.129167e-04   p_cons 1.124460e-01   p_joint 4.612500e-04

Joint ci ratio: 8.317816e-02	ci left: 4.423377e-04	ci right 4.809289e-04	k: 2219	n:4810000
Cons ci ratio: 5.021742e-03	ci left: 1.121565e-01	ci right 1.127213e-01	k: 540830	n:4810000
KS ci ratio: 1.223675e-01	ci left: 2.002514e-04	ci right 2.265519e-04	k: 1025	n:4810000
MTTP   4810000 perm   9778 sec   (492 perm/sec)   p_kst 2.130977e-04   p_cons 1.124387e-01   p_joint 4.613306e-04

Joint ci ratio: 8.315946e-02	ci left: 4.416231e-04	ci right 4.801429e-04	k: 2220	n:4820000
Cons ci ratio: 5.016365e-03	ci left: 1.121633e-01	ci right 1.127276e-01	k: 541986	n:4820000
KS ci ratio: 1.223079e-01	ci left: 2.000370e-04	ci right 2.262957e-04	k: 1026	n:4820000
MTTP   4820000 perm   9817 sec   (491 perm/sec)   p_kst 2.128631e-04   p_cons 1.124452e-01   p_joint 4.605809e-04

Joint ci ratio: 8.308468e-02	ci left: 4.415197e-04	ci right 4.799942e-04	k: 2224	n:4830000
Cons ci ratio: 5.011447e-03	ci left: 1.121526e-01	ci right 1.127162e-01	k: 543057	n:4830000
KS ci ratio: 1.221296e-01	ci left: 2.002250e-04	ci right 2.264672e-04	k: 1029	n:4830000
MTTP   4830000 perm   9856 sec   (490 perm/sec)   p_kst 2.130435e-04   p_cons 1.124342e-01   p_joint 4.604555e-04

Joint ci ratio: 8.301010e-02	ci left: 4.414168e-04	ci right 4.798461e-04	k: 2228	n:4840000
Cons ci ratio: 5.006026e-03	ci left: 1.121625e-01	ci right 1.127256e-01	k: 544228	n:4840000
KS ci ratio: 1.220112e-01	ci left: 2.002119e-04	ci right 2.264252e-04	k: 1031	n:4840000
MTTP   4840000 perm   9894 sec   (489 perm/sec)   p_kst 2.130165e-04   p_cons 1.124438e-01   p_joint 4.603306e-04

Joint ci ratio: 8.295431e-02	ci left: 4.411123e-04	ci right 4.794881e-04	k: 2231	n:4850000
Cons ci ratio: 5.000647e-03	ci left: 1.121713e-01	ci right 1.127339e-01	k: 545394	n:4850000
KS ci ratio: 1.219522e-01	ci left: 1.999990e-04	ci right 2.261708e-04	k: 1032	n:4850000
MTTP   4850000 perm   9933 sec   (488 perm/sec)   p_kst 2.127835e-04   p_cons 1.124524e-01   p_joint 4.600000e-04

Joint ci ratio: 8.291719e-02	ci left: 4.406077e-04	ci right 4.789216e-04	k: 2233	n:4860000
Cons ci ratio: 4.995704e-03	ci left: 1.121635e-01	ci right 1.127254e-01	k: 546479	n:4860000
KS ci ratio: 1.218343e-01	ci left: 1.999865e-04	ci right 2.261295e-04	k: 1034	n:4860000
MTTP   4860000 perm   9972 sec   (487 perm/sec)   p_kst 2.127572e-04   p_cons 1.124442e-01   p_joint 4.594650e-04

Joint ci ratio: 8.282456e-02	ci left: 4.407084e-04	ci right 4.789861e-04	k: 2238	n:4870000
Cons ci ratio: 4.990579e-03	ci left: 1.121635e-01	ci right 1.127249e-01	k: 547602	n:4870000
KS ci ratio: 1.217755e-01	ci left: 1.997749e-04	ci right 2.258767e-04	k: 1035	n:4870000
MTTP   4870000 perm   10011 sec   (486 perm/sec)   p_kst 2.125257e-04   p_cons 1.124439e-01   p_joint 4.595483e-04

Joint ci ratio: 8.273223e-02	ci left: 4.408087e-04	ci right 4.790504e-04	k: 2243	n:4880000
Cons ci ratio: 4.985583e-03	ci left: 1.121590e-01	ci right 1.127198e-01	k: 548703	n:4880000
KS ci ratio: 1.215411e-01	ci left: 2.001602e-04	ci right 2.262585e-04	k: 1039	n:4880000
MTTP   4880000 perm   10050 sec   (486 perm/sec)   p_kst 2.129098e-04   p_cons 1.124391e-01   p_joint 4.596311e-04

Joint ci ratio: 8.269541e-02	ci left: 4.403077e-04	ci right 4.784882e-04	k: 2245	n:4890000
Cons ci ratio: 4.980531e-03	ci left: 1.121574e-01	ci right 1.127175e-01	k: 549818	n:4890000
KS ci ratio: 1.214827e-01	ci left: 1.999492e-04	ci right 2.260065e-04	k: 1040	n:4890000
MTTP   4890000 perm   10089 sec   (485 perm/sec)   p_kst 2.126789e-04   p_cons 1.124372e-01   p_joint 4.591002e-04

Joint ci ratio: 8.278769e-02	ci left: 4.384098e-04	ci right 4.764702e-04	k: 2240	n:4900000
Cons ci ratio: 4.975519e-03	ci left: 1.121547e-01	ci right 1.127143e-01	k: 550928	n:4900000
KS ci ratio: 1.213662e-01	ci left: 1.999369e-04	ci right 2.259658e-04	k: 1042	n:4900000
MTTP   4900000 perm   10128 sec   (484 perm/sec)   p_kst 2.126531e-04   p_cons 1.124343e-01   p_joint 4.571429e-04

Joint ci ratio: 8.269548e-02	ci left: 4.385142e-04	ci right 4.765392e-04	k: 2245	n:4910000
Cons ci ratio: 4.970345e-03	ci left: 1.121592e-01	ci right 1.127182e-01	k: 552073	n:4910000
KS ci ratio: 1.212500e-01	ci left: 1.999247e-04	ci right 2.259253e-04	k: 1044	n:4910000
MTTP   4910000 perm   10168 sec   (483 perm/sec)   p_kst 2.126273e-04   p_cons 1.124385e-01   p_joint 4.572301e-04

Joint ci ratio: 8.260359e-02	ci left: 4.386182e-04	ci right 4.766079e-04	k: 2250	n:4920000
Cons ci ratio: 4.965238e-03	ci left: 1.121616e-01	ci right 1.127201e-01	k: 553208	n:4920000
KS ci ratio: 1.210763e-01	ci left: 2.001096e-04	ci right 2.260943e-04	k: 1047	n:4920000
MTTP   4920000 perm   10207 sec   (482 perm/sec)   p_kst 2.128049e-04   p_cons 1.124407e-01   p_joint 4.573171e-04

Joint ci ratio: 8.249370e-02	ci left: 4.389204e-04	ci right 4.768833e-04	k: 2256	n:4930000
Cons ci ratio: 4.960010e-03	ci left: 1.121695e-01	ci right 1.127275e-01	k: 554370	n:4930000
KS ci ratio: 1.209034e-01	ci left: 2.002938e-04	ci right 2.262626e-04	k: 1050	n:4930000
MTTP   4930000 perm   10246 sec   (481 perm/sec)   p_kst 2.129817e-04   p_cons 1.124483e-01   p_joint 4.576065e-04

Joint ci ratio: 8.236606e-02	ci left: 4.394197e-04	ci right 4.773641e-04	k: 2263	n:4940000
Cons ci ratio: 4.954919e-03	ci left: 1.121726e-01	ci right 1.127299e-01	k: 555508	n:4940000
KS ci ratio: 1.206739e-01	ci left: 2.006736e-04	ci right 2.266388e-04	k: 1054	n:4940000
MTTP   4940000 perm   10285 sec   (480 perm/sec)   p_kst 2.133603e-04   p_cons 1.124510e-01   p_joint 4.580972e-04

Joint ci ratio: 8.391942e-02	ci left: 4.221127e-04	ci right 4.592838e-04	k: 2180	n:4950000
Cons ci ratio: 4.949859e-03	ci left: 1.121749e-01	ci right 1.127318e-01	k: 556643	n:4950000
KS ci ratio: 1.204458e-01	ci left: 2.010519e-04	ci right 2.270133e-04	k: 1058	n:4950000
MTTP   4950000 perm   10325 sec   (479 perm/sec)   p_kst 2.137374e-04   p_cons 1.124531e-01   p_joint 4.404040e-04

Joint ci ratio: 8.382339e-02	ci left: 4.222486e-04	ci right 4.593870e-04	k: 2185	n:4960000
Cons ci ratio: 4.945115e-03	ci left: 1.121653e-01	ci right 1.127215e-01	k: 557718	n:4960000
KS ci ratio: 1.201624e-01	ci left: 2.016243e-04	ci right 2.275940e-04	k: 1063	n:4960000
MTTP   4960000 perm   10364 sec   (479 perm/sec)   p_kst 2.143145e-04   p_cons 1.124431e-01   p_joint 4.405242e-04

Joint ci ratio: 8.376594e-02	ci left: 4.219900e-04	ci right 4.590789e-04	k: 2188	n:4970000
Cons ci ratio: 4.939965e-03	ci left: 1.121725e-01	ci right 1.127282e-01	k: 558877	n:4970000
KS ci ratio: 1.201060e-01	ci left: 2.014138e-04	ci right 2.273434e-04	k: 1064	n:4970000
MTTP   4970000 perm   10404 sec   (478 perm/sec)   p_kst 2.140845e-04   p_cons 1.124501e-01   p_joint 4.402414e-04

Joint ci ratio: 8.372772e-02	ci left: 4.215358e-04	ci right 4.585671e-04	k: 2190	n:4980000
Cons ci ratio: 4.934931e-03	ci left: 1.121757e-01	ci right 1.127308e-01	k: 560016	n:4980000
KS ci ratio: 1.200497e-01	ci left: 2.012041e-04	ci right 2.270937e-04	k: 1065	n:4980000
MTTP   4980000 perm   10444 sec   (477 perm/sec)   p_kst 2.138554e-04   p_cons 1.124530e-01   p_joint 4.397590e-04

Joint ci ratio: 8.357525e-02	ci left: 4.222607e-04	ci right 4.592849e-04	k: 2198	n:4990000
Cons ci ratio: 4.930174e-03	ci left: 1.121682e-01	ci right 1.127228e-01	k: 561102	n:4990000
KS ci ratio: 1.199372e-01	ci left: 2.011897e-04	ci right 2.270514e-04	k: 1067	n:4990000
MTTP   4990000 perm   10484 sec   (476 perm/sec)   p_kst 2.138277e-04   p_cons 1.124453e-01   p_joint 4.404810e-04

Joint ci ratio: 8.349935e-02	ci left: 4.221995e-04	ci right 4.591830e-04	k: 2202	n:5000000
Cons ci ratio: 4.925229e-03	ci left: 1.121690e-01	ci right 1.127230e-01	k: 562229	n:5000000
KS ci ratio: 1.198811e-01	ci left: 2.009813e-04	ci right 2.268033e-04	k: 1068	n:5000000
MTTP   5000000 perm   10524 sec   (475 perm/sec)   p_kst 2.136000e-04   p_cons 1.124458e-01   p_joint 4.404000e-04

Outputting figure to mutsig2_images.part000000000109/MTTP.8_2757_5000000_0.0002136_0.11245_0.0004404.png
                gene_name: MTTP
               theta_stop: 0.12 
                    nperm: 5000000 
                     p_ks: 0.00021 
        ci_ks_bounds_left: 0.00020 
       ci_ks_bounds_right: 0.00023 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.00044 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00046 

Current progress: 20 percent done.
MTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
KS ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
MTL5   10000 perm   2 sec   (5207 perm/sec)   p_kst 2.346000e-01   p_cons 8.194000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000109/MTL5.6_1567_10000_0.2346_0.8194_0.3711.png
                gene_name: MTL5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 22 percent done.
MTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
MTM1   10000 perm   2 sec   (5272 perm/sec)   p_kst 8.071000e-01   p_cons 5.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTM1.6_1868_10000_0.8071_0.5625_1.png
                gene_name: MTM1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
MTMR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
MTMR6   10000 perm   2 sec   (5894 perm/sec)   p_kst 3.620000e-02   p_cons 1.577000e-01   p_joint 4.850000e-02

Joint ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
Cons ci ratio: 6.729385e-02	ci left: 1.401471e-01	ci right 1.499564e-01	k: 2900	n:20000
KS ci ratio: 1.471848e-01	ci left: 3.172413e-02	ci right 3.681244e-02	k: 684	n:20000
MTMR6   20000 perm   4 sec   (5252 perm/sec)   p_kst 3.420000e-02   p_cons 1.450000e-01   p_joint 3.860000e-02

Joint ci ratio: 8.516049e-02	ci left: 6.315059e-02	ci right 6.880048e-02	k: 1978	n:30000
Cons ci ratio: 5.508253e-02	ci left: 1.404404e-01	ci right 1.484286e-01	k: 4332	n:30000
KS ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
MTMR6   30000 perm   6 sec   (5011 perm/sec)   p_kst 3.393333e-02   p_cons 1.444000e-01   p_joint 6.593333e-02

Joint ci ratio: 7.857566e-02	ci left: 5.626880e-02	ci right 6.089554e-02	k: 2342	n:40000
Cons ci ratio: 4.775292e-02	ci left: 1.407213e-01	ci right 1.476304e-01	k: 5766	n:40000
KS ci ratio: 1.049926e-01	ci left: 3.190425e-02	ci right 3.546386e-02	k: 1346	n:40000
MTMR6   40000 perm   8 sec   (4852 perm/sec)   p_kst 3.365000e-02   p_cons 1.441500e-01   p_joint 5.855000e-02

Joint ci ratio: 1.045630e-01	ci left: 2.590864e-02	ci right 2.878659e-02	k: 1366	n:50000
Cons ci ratio: 4.280791e-02	ci left: 1.405369e-01	ci right 1.467045e-01	k: 7180	n:50000
KS ci ratio: 9.704672e-02	ci left: 3.006439e-02	ci right 3.315031e-02	k: 1579	n:50000
MTMR6   50000 perm   11 sec   (4730 perm/sec)   p_kst 3.158000e-02   p_cons 1.436000e-01   p_joint 2.732000e-02

Joint ci ratio: 1.014413e-01	ci left: 2.305014e-02	ci right 2.552950e-02	k: 1456	n:60000
Cons ci ratio: 3.916628e-02	ci left: 1.402575e-01	ci right 1.458771e-01	k: 8583	n:60000
KS ci ratio: 8.752439e-02	ci left: 3.093232e-02	ci right 3.377982e-02	k: 1940	n:60000
MTMR6   60000 perm   13 sec   (4618 perm/sec)   p_kst 3.233333e-02   p_cons 1.430500e-01   p_joint 2.426667e-02

Joint ci ratio: 7.527058e-02	ci left: 3.589426e-02	ci right 3.871569e-02	k: 2610	n:70000
Cons ci ratio: 3.635987e-02	ci left: 1.398048e-01	ci right 1.449964e-01	k: 9967	n:70000
KS ci ratio: 8.167713e-02	ci left: 3.055445e-02	ci right 3.317026e-02	k: 2229	n:70000
MTMR6   70000 perm   15 sec   (4519 perm/sec)   p_kst 3.184286e-02   p_cons 1.423857e-01   p_joint 3.728571e-02

Outputting figure to mutsig2_images.part000000000109/MTMR6.6_1922_70000_0.031843_0.14239_0.037286.png
                gene_name: MTMR6
               theta_stop: 0.082 
                    nperm: 70000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 25 percent done.
MTNR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
Cons ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
KS ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
MTNR1B   10000 perm   2 sec   (5781 perm/sec)   p_kst 5.080000e-01   p_cons 1.589000e-01   p_joint 5.186000e-01

Outputting figure to mutsig2_images.part000000000109/MTNR1B.6_1097_10000_0.508_0.1589_0.5186.png
                gene_name: MTNR1B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 27 percent done.
MTO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
Cons ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
KS ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
MTO1   10000 perm   2 sec   (5229 perm/sec)   p_kst 6.732000e-01   p_cons 9.890000e-02   p_joint 3.112000e-01

Joint ci ratio: 3.510739e-02	ci left: 3.772020e-01	ci right 3.907318e-01	k: 7679	n:20000
Cons ci ratio: 8.371335e-02	ci left: 9.464903e-02	ci right 1.029680e-01	k: 1975	n:20000
KS ci ratio: 1.923732e-02	ci left: 6.683582e-01	ci right 6.813909e-01	k: 13498	n:20000
MTO1   20000 perm   4 sec   (4698 perm/sec)   p_kst 6.749000e-01   p_cons 9.875000e-02   p_joint 3.839500e-01

Outputting figure to mutsig2_images.part000000000109/MTO1.6_2330_20000_0.6749_0.09875_0.38395.png
                gene_name: MTO1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 29 percent done.
MTPAP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
MTPAP   10000 perm   2 sec   (5336 perm/sec)   p_kst 2.365000e-01   p_cons 4.330000e-02   p_joint 8.860000e-02

Joint ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
Cons ci ratio: 1.207563e-01	ci left: 4.702009e-02	ci right 5.311157e-02	k: 1000	n:20000
KS ci ratio: 4.896280e-02	ci left: 2.367216e-01	ci right 2.486533e-01	k: 4853	n:20000
MTPAP   20000 perm   4 sec   (4839 perm/sec)   p_kst 2.426500e-01   p_cons 5.000000e-02   p_joint 1.181500e-01

Joint ci ratio: 6.148159e-02	ci left: 1.156524e-01	ci right 1.230215e-01	k: 3579	n:30000
Cons ci ratio: 1.025990e-01	ci left: 4.401455e-02	ci right 4.880712e-02	k: 1391	n:30000
KS ci ratio: 4.011632e-02	ci left: 2.365661e-01	ci right 2.462840e-01	k: 7242	n:30000
MTPAP   30000 perm   6 sec   (4626 perm/sec)   p_kst 2.414000e-01   p_cons 4.636667e-02   p_joint 1.193000e-01

Joint ci ratio: 5.075988e-02	ci left: 1.264467e-01	ci right 1.330571e-01	k: 5189	n:40000
Cons ci ratio: 8.516486e-02	ci left: 4.815383e-02	ci right 5.246175e-02	k: 2011	n:40000
KS ci ratio: 3.459620e-02	ci left: 2.387535e-01	ci right 2.471839e-01	k: 9718	n:40000
MTPAP   40000 perm   9 sec   (4489 perm/sec)   p_kst 2.429500e-01   p_cons 5.027500e-02   p_joint 1.297250e-01

Outputting figure to mutsig2_images.part000000000109/MTPAP.5_1785_40000_0.24295_0.050275_0.12973.png
                gene_name: MTPAP
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 31 percent done.
MTRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
Cons ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
MTRR   10000 perm   2 sec   (5115 perm/sec)   p_kst 5.713000e-01   p_cons 1.789000e-01   p_joint 3.570000e-01

Outputting figure to mutsig2_images.part000000000109/MTRR.6_2238_10000_0.5713_0.1789_0.357.png
                gene_name: MTRR
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 33 percent done.
MST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
Cons ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
KS ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
MST1   10000 perm   2 sec   (5470 perm/sec)   p_kst 2.500000e-01   p_cons 7.275000e-01   p_joint 4.807000e-01

Outputting figure to mutsig2_images.part000000000109/MST1.5_2250_10000_0.25_0.7275_0.4807.png
                gene_name: MST1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
MTHFD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
Cons ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
MTHFD1L   10000 perm   2 sec   (4963 perm/sec)   p_kst 3.302000e-01   p_cons 3.484000e-01   p_joint 4.399000e-01

Outputting figure to mutsig2_images.part000000000109/MTHFD1L.5_3045_10000_0.3302_0.3484_0.4399.png
                gene_name: MTHFD1L
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 37 percent done.
MTMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
KS ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
MTMR1   10000 perm   2 sec   (5519 perm/sec)   p_kst 4.800000e-03   p_cons 6.395000e-01   p_joint 3.480000e-02

Joint ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
Cons ci ratio: 2.085572e-02	ci left: 6.317969e-01	ci right 6.451628e-01	k: 12770	n:20000
KS ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
MTMR1   20000 perm   4 sec   (4954 perm/sec)   p_kst 5.100000e-03   p_cons 6.385000e-01   p_joint 1.245000e-02

Joint ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
Cons ci ratio: 1.701044e-02	ci left: 6.335352e-01	ci right 6.444379e-01	k: 19170	n:30000
KS ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
MTMR1   30000 perm   6 sec   (4755 perm/sec)   p_kst 5.233333e-03   p_cons 6.390000e-01   p_joint 1.036667e-02

Joint ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
Cons ci ratio: 1.494621e-02	ci left: 6.275528e-01	ci right 6.370280e-01	k: 25292	n:40000
KS ci ratio: 2.844601e-01	ci left: 4.053405e-03	ci right 5.420025e-03	k: 188	n:40000
MTMR1   40000 perm   9 sec   (4626 perm/sec)   p_kst 4.700000e-03   p_cons 6.323000e-01   p_joint 1.512500e-02

Joint ci ratio: 1.151824e-01	ci left: 2.133448e-02	ci right 2.396135e-02	k: 1131	n:50000
Cons ci ratio: 1.337296e-02	ci left: 6.278956e-01	ci right 6.363690e-01	k: 31607	n:50000
KS ci ratio: 2.595857e-01	ci left: 3.950959e-03	ci right 5.147684e-03	k: 226	n:50000
MTMR1   50000 perm   11 sec   (4523 perm/sec)   p_kst 4.520000e-03   p_cons 6.321400e-01   p_joint 2.262000e-02

Joint ci ratio: 1.092226e-01	ci left: 1.986759e-02	ci right 2.217907e-02	k: 1260	n:60000
Cons ci ratio: 1.171513e-02	ci left: 6.472540e-01	ci right 6.548980e-01	k: 39065	n:60000
KS ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
MTMR1   60000 perm   14 sec   (4431 perm/sec)   p_kst 4.733333e-03   p_cons 6.510833e-01   p_joint 2.100000e-02

Joint ci ratio: 9.326714e-02	ci left: 2.346508e-02	ci right 2.577455e-02	k: 1722	n:70000
Cons ci ratio: 1.084061e-02	ci left: 6.477706e-01	ci right 6.548454e-01	k: 45592	n:70000
KS ci ratio: 2.111394e-01	ci left: 4.382648e-03	ci right 5.430468e-03	k: 342	n:70000
MTMR1   70000 perm   16 sec   (4343 perm/sec)   p_kst 4.885714e-03   p_cons 6.513143e-01   p_joint 2.460000e-02

Joint ci ratio: 9.673721e-02	ci left: 1.913868e-02	ci right 2.109634e-02	k: 1608	n:80000
Cons ci ratio: 1.012685e-02	ci left: 6.486123e-01	ci right 6.552266e-01	k: 52154	n:80000
KS ci ratio: 1.995597e-01	ci left: 4.320966e-03	ci right 5.290483e-03	k: 383	n:80000
MTMR1   80000 perm   19 sec   (4258 perm/sec)   p_kst 4.787500e-03   p_cons 6.519250e-01   p_joint 2.010000e-02

Joint ci ratio: 1.152598e-01	ci left: 1.195703e-02	ci right 1.343019e-02	k: 1141	n:90000
Cons ci ratio: 9.551491e-03	ci left: 6.486215e-01	ci right 6.548576e-01	k: 58657	n:90000
KS ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
MTMR1   90000 perm   22 sec   (4180 perm/sec)   p_kst 4.355556e-03   p_cons 6.517444e-01   p_joint 1.267778e-02

Joint ci ratio: 1.119608e-01	ci left: 1.143154e-02	ci right 1.279698e-02	k: 1210	n:100000
Cons ci ratio: 9.057844e-03	ci left: 6.489582e-01	ci right 6.548730e-01	k: 65192	n:100000
KS ci ratio: 1.888520e-01	ci left: 3.884823e-03	ci right 4.704339e-03	k: 428	n:100000
MTMR1   100000 perm   24 sec   (4102 perm/sec)   p_kst 4.280000e-03   p_cons 6.519200e-01   p_joint 1.210000e-02

Joint ci ratio: 1.101975e-01	ci left: 1.074563e-02	ci right 1.200760e-02	k: 1250	n:110000
Cons ci ratio: 8.647604e-03	ci left: 6.485026e-01	ci right 6.541440e-01	k: 71646	n:110000
KS ci ratio: 1.794724e-01	ci left: 3.930578e-03	ci right 4.714092e-03	k: 474	n:110000
MTMR1   110000 perm   27 sec   (4030 perm/sec)   p_kst 4.309091e-03   p_cons 6.513273e-01   p_joint 1.136364e-02

Joint ci ratio: 1.081303e-01	ci left: 1.024720e-02	ci right 1.142662e-02	k: 1299	n:120000
Cons ci ratio: 8.278586e-03	ci left: 6.486710e-01	ci right 6.540717e-01	k: 78165	n:120000
KS ci ratio: 1.732106e-01	ci left: 3.881816e-03	ci right 4.625789e-03	k: 509	n:120000
MTMR1   120000 perm   30 sec   (3964 perm/sec)   p_kst 4.241667e-03   p_cons 6.513750e-01   p_joint 1.082500e-02

Joint ci ratio: 1.048458e-01	ci left: 1.008037e-02	ci right 1.120316e-02	k: 1382	n:130000
Cons ci ratio: 7.939235e-03	ci left: 6.496115e-01	ci right 6.547971e-01	k: 84787	n:130000
KS ci ratio: 1.669472e-01	ci left: 3.870445e-03	ci right 4.582718e-03	k: 548	n:130000
MTMR1   130000 perm   33 sec   (3898 perm/sec)   p_kst 4.215385e-03   p_cons 6.522077e-01   p_joint 1.063077e-02

Joint ci ratio: 1.081310e-01	ci left: 8.796859e-03	ci right 9.809335e-03	k: 1301	n:140000
Cons ci ratio: 7.641419e-03	ci left: 6.502422e-01	ci right 6.552372e-01	k: 91384	n:140000
KS ci ratio: 1.609060e-01	ci left: 3.881682e-03	ci right 4.567673e-03	k: 590	n:140000
MTMR1   140000 perm   36 sec   (3841 perm/sec)   p_kst 4.214286e-03   p_cons 6.527429e-01   p_joint 9.292857e-03

Joint ci ratio: 1.103665e-01	ci left: 7.879484e-03	ci right 8.806338e-03	k: 1250	n:150000
Cons ci ratio: 7.381059e-03	ci left: 6.504045e-01	ci right 6.552296e-01	k: 97923	n:150000
KS ci ratio: 1.559721e-01	ci left: 3.866191e-03	ci right 4.526534e-03	k: 628	n:150000
MTMR1   150000 perm   40 sec   (3785 perm/sec)   p_kst 4.186667e-03   p_cons 6.528200e-01   p_joint 8.333333e-03

Joint ci ratio: 9.769366e-02	ci left: 9.475543e-03	ci right 1.045484e-02	k: 1593	n:160000
Cons ci ratio: 7.157150e-03	ci left: 6.498166e-01	ci right 6.544904e-01	k: 104345	n:160000
KS ci ratio: 1.518090e-01	ci left: 3.834876e-03	ci right 4.470798e-03	k: 663	n:160000
MTMR1   160000 perm   43 sec   (3732 perm/sec)   p_kst 4.143750e-03   p_cons 6.521562e-01   p_joint 9.956250e-03

Joint ci ratio: 9.735335e-02	ci left: 8.986914e-03	ci right 9.912284e-03	k: 1605	n:170000
Cons ci ratio: 6.943148e-03	ci left: 6.499069e-01	ci right 6.544408e-01	k: 110870	n:170000
KS ci ratio: 1.476446e-01	ci left: 3.824449e-03	ci right 4.439710e-03	k: 701	n:170000
MTMR1   170000 perm   46 sec   (3680 perm/sec)   p_kst 4.123529e-03   p_cons 6.521765e-01   p_joint 9.441176e-03

Joint ci ratio: 8.714327e-02	ci left: 1.063198e-02	ci right 1.160609e-02	k: 2000	n:180000
Cons ci ratio: 6.747922e-03	ci left: 6.499445e-01	ci right 6.543506e-01	k: 117387	n:180000
KS ci ratio: 1.433198e-01	ci left: 3.842176e-03	ci right 4.440634e-03	k: 744	n:180000
MTMR1   180000 perm   50 sec   (3629 perm/sec)   p_kst 4.133333e-03   p_cons 6.521500e-01   p_joint 1.111111e-02

Joint ci ratio: 8.991114e-02	ci left: 9.459686e-03	ci right 1.035536e-02	k: 1881	n:190000
Cons ci ratio: 6.572328e-03	ci left: 6.497004e-01	ci right 6.539897e-01	k: 123851	n:190000
KS ci ratio: 1.398001e-01	ci left: 3.832872e-03	ci right 4.413997e-03	k: 782	n:190000
MTMR1   190000 perm   53 sec   (3579 perm/sec)   p_kst 4.115789e-03   p_cons 6.518474e-01   p_joint 9.900000e-03

Joint ci ratio: 8.679878e-02	ci left: 9.656609e-03	ci right 1.053768e-02	k: 2018	n:200000
Cons ci ratio: 6.404960e-03	ci left: 6.498226e-01	ci right 6.540030e-01	k: 130383	n:200000
KS ci ratio: 1.347268e-01	ci left: 3.930942e-03	ci right 4.503575e-03	k: 842	n:200000
MTMR1   200000 perm   57 sec   (3530 perm/sec)   p_kst 4.210000e-03   p_cons 6.519150e-01   p_joint 1.009000e-02

Joint ci ratio: 8.567048e-02	ci left: 9.448324e-03	ci right 1.029862e-02	k: 2072	n:210000
Cons ci ratio: 6.248317e-03	ci left: 6.500393e-01	ci right 6.541184e-01	k: 136937	n:210000
KS ci ratio: 1.323195e-01	ci left: 3.886436e-03	ci right 4.441674e-03	k: 873	n:210000
MTMR1   210000 perm   60 sec   (3474 perm/sec)   p_kst 4.157143e-03   p_cons 6.520810e-01   p_joint 9.866667e-03

Joint ci ratio: 8.462487e-02	ci left: 9.250145e-03	ci right 1.007194e-02	k: 2124	n:220000
Cons ci ratio: 6.105749e-03	ci left: 6.500053e-01	ci right 6.539907e-01	k: 143440	n:220000
KS ci ratio: 1.290382e-01	ci left: 3.907641e-03	ci right 4.451005e-03	k: 918	n:220000
MTMR1   220000 perm   64 sec   (3420 perm/sec)   p_kst 4.172727e-03   p_cons 6.520000e-01   p_joint 9.654545e-03

Joint ci ratio: 7.386931e-02	ci left: 1.164862e-02	ci right 1.254634e-02	k: 2781	n:230000
Cons ci ratio: 5.970625e-03	ci left: 6.501189e-01	ci right 6.540164e-01	k: 149976	n:230000
KS ci ratio: 1.265178e-01	ci left: 3.893469e-03	ci right 4.423494e-03	k: 955	n:230000
MTMR1   230000 perm   68 sec   (3368 perm/sec)   p_kst 4.152174e-03   p_cons 6.520696e-01   p_joint 1.209130e-02

Joint ci ratio: 7.700055e-02	ci left: 1.027178e-02	ci right 1.109844e-02	k: 2563	n:240000
Cons ci ratio: 5.849408e-03	ci left: 6.498109e-01	ci right 6.536271e-01	k: 156413	n:240000
KS ci ratio: 1.237647e-01	ci left: 3.904801e-03	ci right 4.423953e-03	k: 998	n:240000
MTMR1   240000 perm   72 sec   (3327 perm/sec)   p_kst 4.158333e-03   p_cons 6.517208e-01   p_joint 1.067917e-02

Joint ci ratio: 7.552825e-02	ci left: 1.025720e-02	ci right 1.106621e-02	k: 2664	n:250000
Cons ci ratio: 5.729217e-03	ci left: 6.500089e-01	ci right 6.537476e-01	k: 162970	n:250000
KS ci ratio: 1.209508e-01	ci left: 3.930858e-03	ci right 4.440742e-03	k: 1045	n:250000
MTMR1   250000 perm   76 sec   (3286 perm/sec)   p_kst 4.180000e-03   p_cons 6.518800e-01   p_joint 1.065600e-02

Joint ci ratio: 7.450571e-02	ci left: 1.014194e-02	ci right 1.093056e-02	k: 2738	n:260000
Cons ci ratio: 5.617379e-03	ci left: 6.500923e-01	ci right 6.537582e-01	k: 169501	n:260000
KS ci ratio: 1.185386e-01	ci left: 3.940103e-03	ci right 4.440279e-03	k: 1088	n:260000
MTMR1   260000 perm   80 sec   (3248 perm/sec)   p_kst 4.184615e-03   p_cons 6.519269e-01   p_joint 1.053077e-02

Joint ci ratio: 8.231410e-02	ci left: 7.986618e-03	ci right 8.675850e-03	k: 2248	n:270000
Cons ci ratio: 5.509596e-03	ci left: 6.503555e-01	ci right 6.539523e-01	k: 176082	n:270000
KS ci ratio: 1.148972e-01	ci left: 4.045877e-03	ci right 4.542634e-03	k: 1158	n:270000
MTMR1   270000 perm   84 sec   (3210 perm/sec)   p_kst 4.288889e-03   p_cons 6.521556e-01   p_joint 8.325926e-03

Joint ci ratio: 8.102895e-02	ci left: 7.953267e-03	ci right 8.628399e-03	k: 2320	n:280000
Cons ci ratio: 5.409915e-03	ci left: 6.504218e-01	ci right 6.539536e-01	k: 182613	n:280000
KS ci ratio: 1.125416e-01	ci left: 4.071407e-03	ci right 4.560369e-03	k: 1207	n:280000
MTMR1   280000 perm   88 sec   (3174 perm/sec)   p_kst 4.310714e-03   p_cons 6.521893e-01   p_joint 8.285714e-03

Joint ci ratio: 8.083026e-02	ci left: 7.719521e-03	ci right 8.373127e-03	k: 2332	n:290000
Cons ci ratio: 5.314889e-03	ci left: 6.505324e-01	ci right 6.540025e-01	k: 189158	n:290000
KS ci ratio: 1.106349e-01	ci left: 4.071799e-03	ci right 4.551983e-03	k: 1249	n:290000
MTMR1   290000 perm   92 sec   (3135 perm/sec)   p_kst 4.306897e-03   p_cons 6.522690e-01   p_joint 8.041379e-03

Joint ci ratio: 7.979644e-02	ci left: 7.661444e-03	ci right 8.301449e-03	k: 2393	n:300000
Cons ci ratio: 5.225507e-03	ci left: 6.505660e-01	ci right 6.539777e-01	k: 195682	n:300000
KS ci ratio: 1.089067e-01	ci left: 4.065744e-03	ci right 4.537244e-03	k: 1289	n:300000
MTMR1   300000 perm   97 sec   (3101 perm/sec)   p_kst 4.296667e-03   p_cons 6.522733e-01   p_joint 7.976667e-03

Joint ci ratio: 7.822518e-02	ci left: 7.721030e-03	ci right 8.352735e-03	k: 2490	n:310000
Cons ci ratio: 5.137308e-03	ci left: 6.508789e-01	ci right 6.542344e-01	k: 202293	n:310000
KS ci ratio: 1.065354e-01	ci left: 4.116653e-03	ci right 4.583010e-03	k: 1347	n:310000
MTMR1   310000 perm   101 sec   (3066 perm/sec)   p_kst 4.345161e-03   p_cons 6.525581e-01   p_joint 8.032258e-03

Joint ci ratio: 6.708897e-02	ci left: 1.020195e-02	ci right 1.091320e-02	k: 3377	n:320000
Cons ci ratio: 5.055968e-03	ci left: 6.509442e-01	ci right 6.542468e-01	k: 208831	n:320000
KS ci ratio: 1.045368e-01	ci left: 4.146221e-03	ci right 4.606575e-03	k: 1399	n:320000
MTMR1   320000 perm   106 sec   (3032 perm/sec)   p_kst 4.371875e-03   p_cons 6.525969e-01   p_joint 1.055313e-02

Joint ci ratio: 6.604131e-02	ci left: 1.021463e-02	ci right 1.091522e-02	k: 3485	n:330000
Cons ci ratio: 4.979405e-03	ci left: 6.509119e-01	ci right 6.541642e-01	k: 215338	n:330000
KS ci ratio: 1.026821e-01	ci left: 4.171122e-03	ci right 4.625528e-03	k: 1450	n:330000
MTMR1   330000 perm   110 sec   (2999 perm/sec)   p_kst 4.393939e-03   p_cons 6.525394e-01   p_joint 1.056061e-02

Joint ci ratio: 6.514207e-02	ci left: 1.019481e-02	ci right 1.088416e-02	k: 3582	n:340000
Cons ci ratio: 4.904117e-03	ci left: 6.510763e-01	ci right 6.542800e-01	k: 221911	n:340000
KS ci ratio: 1.013301e-01	ci left: 4.160220e-03	ci right 4.607116e-03	k: 1489	n:340000
MTMR1   340000 perm   115 sec   (2967 perm/sec)   p_kst 4.379412e-03   p_cons 6.526794e-01   p_joint 1.053529e-02

Joint ci ratio: 6.348994e-02	ci left: 1.043208e-02	ci right 1.111892e-02	k: 3770	n:350000
Cons ci ratio: 4.834398e-03	ci left: 6.510199e-01	ci right 6.541776e-01	k: 228410	n:350000
KS ci ratio: 9.960576e-02	ci left: 4.186197e-03	ci right 4.627784e-03	k: 1541	n:350000
MTMR1   350000 perm   119 sec   (2935 perm/sec)   p_kst 4.402857e-03   p_cons 6.526000e-01   p_joint 1.077143e-02

Outputting figure to mutsig2_images.part000000000109/MTMR1.5_2058_350000_0.0044029_0.6526_0.010771.png
                gene_name: MTMR1
               theta_stop: 0.100 
                    nperm: 350000 
                     p_ks: 0.0044 
        ci_ks_bounds_left: 0.0042 
       ci_ks_bounds_right: 0.0046 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 39 percent done.
MTMR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
Cons ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
MTMR11   10000 perm   2 sec   (5474 perm/sec)   p_kst 2.320000e-02   p_cons 6.303000e-01   p_joint 1.413000e-01

Joint ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
Cons ci ratio: 2.078125e-02	ci left: 6.334533e-01	ci right 6.468060e-01	k: 12803	n:20000
KS ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
MTMR11   20000 perm   4 sec   (4947 perm/sec)   p_kst 2.255000e-02   p_cons 6.401500e-01   p_joint 5.915000e-02

Joint ci ratio: 9.949036e-02	ci left: 4.674709e-02	ci right 5.167402e-02	k: 1475	n:30000
Cons ci ratio: 1.738343e-02	ci left: 6.234378e-01	ci right 6.344039e-01	k: 18868	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
MTMR11   30000 perm   6 sec   (4720 perm/sec)   p_kst 2.303333e-02   p_cons 6.289333e-01   p_joint 4.916667e-02

Joint ci ratio: 8.595498e-02	ci left: 4.729664e-02	ci right 5.156908e-02	k: 1976	n:40000
Cons ci ratio: 1.504359e-02	ci left: 6.245199e-01	ci right 6.340113e-01	k: 25171	n:40000
KS ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
MTMR11   40000 perm   9 sec   (4588 perm/sec)   p_kst 2.305000e-02   p_cons 6.292750e-01   p_joint 4.940000e-02

Joint ci ratio: 8.053468e-02	ci left: 4.341515e-02	ci right 4.707788e-02	k: 2261	n:50000
Cons ci ratio: 1.350149e-02	ci left: 6.234254e-01	ci right 6.319198e-01	k: 31384	n:50000
KS ci ratio: 1.133516e-01	ci left: 2.203435e-02	ci right 2.470139e-02	k: 1167	n:50000
MTMR11   50000 perm   11 sec   (4486 perm/sec)   p_kst 2.334000e-02   p_cons 6.276800e-01   p_joint 4.522000e-02

Joint ci ratio: 7.084441e-02	ci left: 4.682742e-02	ci right 5.028308e-02	k: 2912	n:60000
Cons ci ratio: 1.232507e-02	ci left: 6.238008e-01	ci right 6.315535e-01	k: 37661	n:60000
KS ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
MTMR11   60000 perm   14 sec   (4390 perm/sec)   p_kst 2.295000e-02   p_cons 6.276833e-01   p_joint 4.853333e-02

Joint ci ratio: 6.770467e-02	ci left: 4.415063e-02	ci right 4.725860e-02	k: 3198	n:70000
Cons ci ratio: 1.138323e-02	ci left: 6.252229e-01	ci right 6.323950e-01	k: 44017	n:70000
KS ci ratio: 9.650316e-02	ci left: 2.191613e-02	ci right 2.415222e-02	k: 1611	n:70000
MTMR11   70000 perm   16 sec   (4306 perm/sec)   p_kst 2.301429e-02   p_cons 6.288143e-01   p_joint 4.568571e-02

Outputting figure to mutsig2_images.part000000000109/MTMR11.5_2237_70000_0.023014_0.62881_0.045686.png
                gene_name: MTMR11
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 41 percent done.
MTMR15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.692624e-02	ci left: 6.701514e-01	ci right 6.885440e-01	k: 6794	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
MTMR15   10000 perm   2 sec   (4946 perm/sec)   p_kst 7.551000e-01   p_cons 6.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTMR15.5_3131_10000_0.7551_0.6794_1.png
                gene_name: MTMR15
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
MTMR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.659998e-02	ci left: 4.046213e-01	ci right 4.240286e-01	k: 4143	n:10000
Cons ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
MTMR4   10000 perm   2 sec   (4849 perm/sec)   p_kst 2.431000e-01   p_cons 8.714000e-01   p_joint 4.143000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR4.5_3660_10000_0.2431_0.8714_0.4143.png
                gene_name: MTMR4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
MTNR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
MTNR1A   10000 perm   2 sec   (5987 perm/sec)   p_kst 6.528000e-01   p_cons 9.968000e-01   p_joint 9.246000e-01

Outputting figure to mutsig2_images.part000000000109/MTNR1A.5_1061_10000_0.6528_0.9968_0.9246.png
                gene_name: MTNR1A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 47 percent done.
MUC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
Cons ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
KS ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
MUC15   10000 perm   2 sec   (5817 perm/sec)   p_kst 8.792000e-01   p_cons 5.150000e-02   p_joint 1.215000e-01

Joint ci ratio: 6.599531e-02	ci left: 1.449788e-01	ci right 1.549232e-01	k: 2998	n:20000
Cons ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
KS ci ratio: 1.028523e-02	ci left: 8.744000e-01	ci right 8.834895e-01	k: 17580	n:20000
MUC15   20000 perm   4 sec   (5211 perm/sec)   p_kst 8.790000e-01   p_cons 5.415000e-02   p_joint 1.499000e-01

Joint ci ratio: 5.057007e-02	ci left: 1.626302e-01	ci right 1.711011e-01	k: 5005	n:30000
Cons ci ratio: 9.420431e-02	ci left: 5.199044e-02	ci right 5.716291e-02	k: 1636	n:30000
KS ci ratio: 8.552084e-03	ci left: 8.712721e-01	ci right 8.787884e-01	k: 26252	n:30000
MUC15   30000 perm   6 sec   (4984 perm/sec)   p_kst 8.750667e-01   p_cons 5.453333e-02   p_joint 1.668333e-01

Outputting figure to mutsig2_images.part000000000109/MUC15.5_1102_30000_0.87507_0.054533_0.16683.png
                gene_name: MUC15
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 49 percent done.
MSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
Cons ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
KS ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
MSR1   10000 perm   2 sec   (5572 perm/sec)   p_kst 4.732000e-01   p_cons 5.180000e-02   p_joint 3.048000e-01

Joint ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
Cons ci ratio: 1.180498e-01	ci left: 4.915761e-02	ci right 5.537338e-02	k: 1044	n:20000
KS ci ratio: 2.969356e-02	ci left: 4.586673e-01	ci right 4.725427e-01	k: 9312	n:20000
MSR1   20000 perm   4 sec   (4780 perm/sec)   p_kst 4.656000e-01   p_cons 5.220000e-02   p_joint 1.028000e-01

Joint ci ratio: 5.876418e-02	ci left: 1.253580e-01	ci right 1.329807e-01	k: 3874	n:30000
Cons ci ratio: 9.399194e-02	ci left: 5.221858e-02	ci right 5.740139e-02	k: 1643	n:30000
KS ci ratio: 2.422587e-02	ci left: 4.603420e-01	ci right 4.716646e-01	k: 13980	n:30000
MSR1   30000 perm   6 sec   (4728 perm/sec)   p_kst 4.660000e-01   p_cons 5.476667e-02   p_joint 1.291333e-01

Outputting figure to mutsig2_images.part000000000109/MSR1.4_1440_30000_0.466_0.054767_0.12913.png
                gene_name: MSR1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
MST1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
MST1R   10000 perm   2 sec   (5156 perm/sec)   p_kst 9.577000e-01   p_cons 1.965000e-01   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000109/MST1R.4_4283_10000_0.9577_0.1965_0.5192.png
                gene_name: MST1R
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 53 percent done.
MST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
MST4   10000 perm   2 sec   (5983 perm/sec)   p_kst 5.456000e-01   p_cons 1.795000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000109/MST4.4_1295_10000_0.5456_0.1795_0.4195.png
                gene_name: MST4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 55 percent done.
MSX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
MSX1   10000 perm   2 sec   (6096 perm/sec)   p_kst 8.830000e-02   p_cons 9.360000e-02   p_joint 9.420000e-02

Joint ci ratio: 8.970741e-02	ci left: 8.322723e-02	ci right 9.109328e-02	k: 1742	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 8.744546e-02	ci left: 8.729371e-02	ci right 9.532556e-02	k: 1825	n:20000
MSX1   20000 perm   4 sec   (5410 perm/sec)   p_kst 9.125000e-02   p_cons 9.090000e-02   p_joint 8.710000e-02

Outputting figure to mutsig2_images.part000000000109/MSX1.4_920_20000_0.09125_0.0909_0.0871.png
                gene_name: MSX1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 57 percent done.
MTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
MTA2   10000 perm   2 sec   (5891 perm/sec)   p_kst 2.594000e-01   p_cons 6.000000e-03   p_joint 7.780000e-02

Joint ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
Cons ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
KS ci ratio: 4.690870e-02	ci left: 2.526909e-01	ci right 2.648793e-01	k: 5175	n:20000
MTA2   20000 perm   4 sec   (5251 perm/sec)   p_kst 2.587500e-01   p_cons 5.500000e-03   p_joint 4.270000e-02

Joint ci ratio: 9.871899e-02	ci left: 4.746312e-02	ci right 5.242450e-02	k: 1497	n:30000
Cons ci ratio: 3.214209e-01	ci left: 4.141425e-03	ci right 5.756742e-03	k: 147	n:30000
KS ci ratio: 3.854534e-02	ci left: 2.513999e-01	ci right 2.613140e-01	k: 7690	n:30000
MTA2   30000 perm   6 sec   (4977 perm/sec)   p_kst 2.563333e-01   p_cons 4.900000e-03   p_joint 4.990000e-02

Joint ci ratio: 8.810947e-02	ci left: 4.506880e-02	ci right 4.924726e-02	k: 1885	n:40000
Cons ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
KS ci ratio: 3.322370e-02	ci left: 2.538666e-01	ci right 2.624685e-01	k: 10326	n:40000
MTA2   40000 perm   8 sec   (4819 perm/sec)   p_kst 2.581500e-01   p_cons 4.900000e-03   p_joint 4.712500e-02

Joint ci ratio: 7.081810e-02	ci left: 5.569156e-02	ci right 5.979998e-02	k: 2886	n:50000
Cons ci ratio: 2.503367e-01	ci left: 4.269324e-03	ci right 5.509234e-03	k: 243	n:50000
KS ci ratio: 2.964771e-02	ci left: 2.552040e-01	ci right 2.629040e-01	k: 12952	n:50000
MTA2   50000 perm   11 sec   (4688 perm/sec)   p_kst 2.590400e-01   p_cons 4.860000e-03   p_joint 5.772000e-02

Joint ci ratio: 6.541688e-02	ci left: 5.461649e-02	ci right 5.832655e-02	k: 3387	n:60000
Cons ci ratio: 2.253757e-01	ci left: 4.451343e-03	ci right 5.597340e-03	k: 300	n:60000
KS ci ratio: 2.705820e-02	ci left: 2.556308e-01	ci right 2.626592e-01	k: 15548	n:60000
MTA2   60000 perm   13 sec   (4580 perm/sec)   p_kst 2.591333e-01   p_cons 5.000000e-03   p_joint 5.645000e-02

Joint ci ratio: 5.701508e-02	ci left: 6.145075e-02	ci right 6.507127e-02	k: 4427	n:70000
Cons ci ratio: 2.090068e-01	ci left: 4.477410e-03	ci right 5.535691e-03	k: 349	n:70000
KS ci ratio: 2.510286e-02	ci left: 2.551031e-01	ci right 2.616026e-01	k: 18084	n:70000
MTA2   70000 perm   16 sec   (4491 perm/sec)   p_kst 2.583429e-01   p_cons 4.985714e-03   p_joint 6.324286e-02

Joint ci ratio: 5.348282e-02	ci left: 6.123960e-02	ci right 6.461718e-02	k: 5033	n:80000
Cons ci ratio: 1.957543e-01	ci left: 4.499226e-03	ci right 5.487197e-03	k: 398	n:80000
KS ci ratio: 2.300824e-02	ci left: 2.631645e-01	ci right 2.693024e-01	k: 21298	n:80000
MTA2   80000 perm   18 sec   (4397 perm/sec)   p_kst 2.662250e-01   p_cons 4.975000e-03   p_joint 6.291250e-02

Joint ci ratio: 5.487568e-02	ci left: 5.218126e-02	ci right 5.513648e-02	k: 4828	n:90000
Cons ci ratio: 1.874938e-01	ci left: 4.380102e-03	ci right 5.296706e-03	k: 434	n:90000
KS ci ratio: 2.169262e-02	ci left: 2.633367e-01	ci right 2.691228e-01	k: 23960	n:90000
MTA2   90000 perm   21 sec   (4316 perm/sec)   p_kst 2.662222e-01   p_cons 4.822222e-03   p_joint 5.364444e-02

Joint ci ratio: 5.081347e-02	ci left: 5.474093e-02	ci right 5.760488e-02	k: 5616	n:100000
Cons ci ratio: 1.753977e-01	ci left: 4.533989e-03	ci right 5.415100e-03	k: 496	n:100000
KS ci ratio: 2.059436e-02	ci left: 2.632034e-01	ci right 2.686902e-01	k: 26594	n:100000
MTA2   100000 perm   24 sec   (4241 perm/sec)   p_kst 2.659400e-01   p_cons 4.960000e-03   p_joint 5.616000e-02

Joint ci ratio: 4.716686e-02	ci left: 5.768659e-02	ci right 6.048217e-02	k: 6498	n:110000
Cons ci ratio: 1.664264e-01	ci left: 4.600444e-03	ci right 5.444160e-03	k: 551	n:110000
KS ci ratio: 1.964076e-02	ci left: 2.632364e-01	ci right 2.684669e-01	k: 29243	n:110000
MTA2   110000 perm   26 sec   (4168 perm/sec)   p_kst 2.658455e-01   p_cons 5.009091e-03   p_joint 5.907273e-02

Joint ci ratio: 4.268761e-02	ci left: 6.425505e-02	ci right 6.706599e-02	k: 7878	n:120000
Cons ci ratio: 1.603048e-01	ci left: 4.560752e-03	ci right 5.363459e-03	k: 594	n:120000
KS ci ratio: 1.877275e-02	ci left: 2.640083e-01	ci right 2.690197e-01	k: 31981	n:120000
MTA2   120000 perm   29 sec   (4100 perm/sec)   p_kst 2.665083e-01   p_cons 4.950000e-03   p_joint 6.565000e-02

Joint ci ratio: 4.392038e-02	ci left: 5.646895e-02	ci right 5.901236e-02	k: 7505	n:130000
Cons ci ratio: 1.559215e-01	ci left: 4.461097e-03	ci right 5.222786e-03	k: 628	n:130000
KS ci ratio: 1.804272e-02	ci left: 2.639676e-01	ci right 2.687813e-01	k: 34628	n:130000
MTA2   130000 perm   32 sec   (4033 perm/sec)   p_kst 2.663692e-01   p_cons 4.830769e-03   p_joint 5.773077e-02

Joint ci ratio: 4.237670e-02	ci left: 5.637810e-02	ci right 5.882598e-02	k: 8063	n:140000
Cons ci ratio: 1.491894e-01	ci left: 4.540938e-03	ci right 5.279797e-03	k: 686	n:140000
KS ci ratio: 1.738665e-02	ci left: 2.640500e-01	ci right 2.686883e-01	k: 37291	n:140000
MTA2   140000 perm   35 sec   (3968 perm/sec)   p_kst 2.663643e-01   p_cons 4.900000e-03   p_joint 5.759286e-02

Joint ci ratio: 3.826578e-02	ci left: 6.413412e-02	ci right 6.664271e-02	k: 9807	n:150000
Cons ci ratio: 1.439413e-01	ci left: 4.565746e-03	ci right 5.280264e-03	k: 737	n:150000
KS ci ratio: 1.677870e-02	ci left: 2.645563e-01	ci right 2.690394e-01	k: 40019	n:150000
MTA2   150000 perm   39 sec   (3893 perm/sec)   p_kst 2.667933e-01   p_cons 4.913333e-03   p_joint 6.538000e-02

Joint ci ratio: 4.086316e-02	ci left: 5.327506e-02	ci right 5.550362e-02	k: 8701	n:160000
Cons ci ratio: 1.398355e-01	ci left: 4.545622e-03	ci right 5.235007e-03	k: 781	n:160000
KS ci ratio: 1.621379e-02	ci left: 2.654007e-01	ci right 2.697452e-01	k: 42811	n:160000
MTA2   160000 perm   42 sec   (3825 perm/sec)   p_kst 2.675688e-01   p_cons 4.881250e-03   p_joint 5.438125e-02

Joint ci ratio: 3.602033e-02	ci left: 6.395509e-02	ci right 6.630683e-02	k: 11071	n:170000
Cons ci ratio: 1.354864e-01	ci left: 4.567905e-03	ci right 5.237386e-03	k: 832	n:170000
KS ci ratio: 1.574570e-02	ci left: 2.650682e-01	ci right 2.692809e-01	k: 45419	n:170000
MTA2   170000 perm   45 sec   (3770 perm/sec)   p_kst 2.671706e-01   p_cons 4.894118e-03   p_joint 6.512353e-02

Joint ci ratio: 3.622438e-02	ci left: 5.997579e-02	ci right 6.219393e-02	k: 10994	n:180000
Cons ci ratio: 1.317442e-01	ci left: 4.571886e-03	ci right 5.221995e-03	k: 880	n:180000
KS ci ratio: 1.531049e-02	ci left: 2.649129e-01	ci right 2.690057e-01	k: 48052	n:180000
MTA2   180000 perm   48 sec   (3720 perm/sec)   p_kst 2.669556e-01   p_cons 4.888889e-03   p_joint 6.107778e-02

Joint ci ratio: 3.927831e-02	ci left: 4.883133e-02	ci right 5.079296e-02	k: 9463	n:190000
Cons ci ratio: 1.281573e-01	ci left: 4.585866e-03	ci right 5.218859e-03	k: 930	n:190000
KS ci ratio: 1.489585e-02	ci left: 2.651325e-01	ci right 2.691167e-01	k: 50753	n:190000
MTA2   190000 perm   52 sec   (3671 perm/sec)   p_kst 2.671211e-01   p_cons 4.894737e-03   p_joint 4.980526e-02

Joint ci ratio: 3.838750e-02	ci left: 4.860295e-02	ci right 5.051013e-02	k: 9910	n:200000
Cons ci ratio: 1.257533e-01	ci left: 4.530848e-03	ci right 5.143639e-03	k: 966	n:200000
KS ci ratio: 1.455590e-02	ci left: 2.641841e-01	ci right 2.680627e-01	k: 53224	n:200000
MTA2   200000 perm   55 sec   (3622 perm/sec)   p_kst 2.661200e-01   p_cons 4.830000e-03   p_joint 4.955000e-02

Joint ci ratio: 3.705129e-02	ci left: 4.966640e-02	ci right 5.154603e-02	k: 10626	n:210000
Cons ci ratio: 1.226226e-01	ci left: 4.545794e-03	ci right 5.144190e-03	k: 1016	n:210000
KS ci ratio: 1.419961e-02	ci left: 2.643818e-01	ci right 2.681675e-01	k: 55917	n:210000
MTA2   210000 perm   59 sec   (3573 perm/sec)   p_kst 2.662714e-01   p_cons 4.838095e-03   p_joint 5.060000e-02

Joint ci ratio: 3.268253e-02	ci left: 6.037331e-02	ci right 6.238372e-02	k: 13502	n:220000
Cons ci ratio: 1.197710e-01	ci left: 4.555144e-03	ci right 5.139838e-03	k: 1065	n:220000
KS ci ratio: 1.387665e-02	ci left: 2.643268e-01	ci right 2.680249e-01	k: 58558	n:220000
MTA2   220000 perm   62 sec   (3527 perm/sec)   p_kst 2.661727e-01   p_cons 4.840909e-03   p_joint 6.137273e-02

Joint ci ratio: 3.198802e-02	ci left: 6.031007e-02	ci right 6.227492e-02	k: 14096	n:230000
Cons ci ratio: 1.170042e-01	ci left: 4.572269e-03	ci right 5.144666e-03	k: 1116	n:230000
KS ci ratio: 1.357039e-02	ci left: 2.644032e-01	ci right 2.680201e-01	k: 61228	n:230000
MTA2   230000 perm   66 sec   (3481 perm/sec)   p_kst 2.662087e-01   p_cons 4.852174e-03   p_joint 6.128696e-02

Joint ci ratio: 3.132462e-02	ci left: 6.029388e-02	ci right 6.221673e-02	k: 14700	n:240000
Cons ci ratio: 1.139316e-01	ci left: 4.628592e-03	ci right 5.191800e-03	k: 1177	n:240000
KS ci ratio: 1.327803e-02	ci left: 2.646363e-01	ci right 2.681777e-01	k: 63937	n:240000
MTA2   240000 perm   70 sec   (3435 perm/sec)   p_kst 2.664042e-01   p_cons 4.904167e-03   p_joint 6.125000e-02

Joint ci ratio: 3.069339e-02	ci left: 6.030718e-02	ci right 6.219101e-02	k: 15311	n:250000
Cons ci ratio: 1.121861e-01	ci left: 4.587257e-03	ci right 5.136319e-03	k: 1214	n:250000
KS ci ratio: 1.300617e-02	ci left: 2.647796e-01	ci right 2.682498e-01	k: 66628	n:250000
MTA2   250000 perm   74 sec   (3393 perm/sec)   p_kst 2.665120e-01   p_cons 4.856000e-03   p_joint 6.124400e-02

Joint ci ratio: 3.095482e-02	ci left: 5.719618e-02	ci right 5.899830e-02	k: 15104	n:260000
Cons ci ratio: 1.101215e-01	ci left: 4.582828e-03	ci right 5.120609e-03	k: 1260	n:260000
KS ci ratio: 1.275237e-02	ci left: 2.648511e-01	ci right 2.682541e-01	k: 69303	n:260000
MTA2   260000 perm   78 sec   (3350 perm/sec)   p_kst 2.665500e-01   p_cons 4.846154e-03   p_joint 5.809231e-02

Joint ci ratio: 3.044419e-02	ci left: 5.697046e-02	ci right 5.873534e-02	k: 15619	n:270000
Cons ci ratio: 1.073039e-01	ci left: 4.654504e-03	ci right 5.185839e-03	k: 1327	n:270000
KS ci ratio: 1.251820e-02	ci left: 2.647517e-01	ci right 2.680904e-01	k: 71933	n:270000
MTA2   270000 perm   82 sec   (3307 perm/sec)   p_kst 2.664185e-01   p_cons 4.914815e-03   p_joint 5.784815e-02

Joint ci ratio: 2.988534e-02	ci left: 5.702353e-02	ci right 5.875707e-02	k: 16208	n:280000
Cons ci ratio: 1.054930e-01	ci left: 4.648184e-03	ci right 5.169287e-03	k: 1373	n:280000
KS ci ratio: 1.228996e-02	ci left: 2.648666e-01	ci right 2.681454e-01	k: 74621	n:280000
MTA2   280000 perm   86 sec   (3266 perm/sec)   p_kst 2.665036e-01   p_cons 4.903571e-03   p_joint 5.788571e-02

Joint ci ratio: 2.935154e-02	ci left: 5.709033e-02	ci right 5.879438e-02	k: 16802	n:290000
Cons ci ratio: 1.036243e-01	ci left: 4.655808e-03	ci right 5.167956e-03	k: 1423	n:290000
KS ci ratio: 1.207738e-02	ci left: 2.648570e-01	ci right 2.680787e-01	k: 77275	n:290000
MTA2   290000 perm   90 sec   (3226 perm/sec)   p_kst 2.664655e-01   p_cons 4.906897e-03   p_joint 5.793793e-02

Joint ci ratio: 2.875075e-02	ci left: 5.751050e-02	ci right 5.919137e-02	k: 17504	n:300000
Cons ci ratio: 1.017474e-01	ci left: 4.672746e-03	ci right 5.176891e-03	k: 1476	n:300000
KS ci ratio: 1.187557e-02	ci left: 2.648453e-01	ci right 2.680126e-01	k: 79928	n:300000
MTA2   300000 perm   94 sec   (3187 perm/sec)   p_kst 2.664267e-01   p_cons 4.920000e-03   p_joint 5.834667e-02

Joint ci ratio: 2.880127e-02	ci left: 5.557443e-02	ci right 5.720161e-02	k: 17479	n:310000
Cons ci ratio: 1.000676e-01	ci left: 4.679233e-03	ci right 5.175253e-03	k: 1526	n:310000
KS ci ratio: 1.167825e-02	ci left: 2.650118e-01	ci right 2.681280e-01	k: 82636	n:310000
MTA2   310000 perm   98 sec   (3151 perm/sec)   p_kst 2.665677e-01   p_cons 4.922581e-03   p_joint 5.638387e-02

Joint ci ratio: 2.976943e-02	ci left: 5.063434e-02	ci right 5.216755e-02	k: 16447	n:320000
Cons ci ratio: 9.846838e-02	ci left: 4.685378e-03	ci right 5.173654e-03	k: 1576	n:320000
KS ci ratio: 1.148778e-02	ci left: 2.652588e-01	ci right 2.683267e-01	k: 85373	n:320000
MTA2   320000 perm   103 sec   (3115 perm/sec)   p_kst 2.667906e-01   p_cons 4.925000e-03   p_joint 5.139688e-02

Outputting figure to mutsig2_images.part000000000109/MTA2.4_2079_320000_0.26679_0.004925_0.051397.png
                gene_name: MTA2
               theta_stop: 0.098 
                    nperm: 320000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0047 
     ci_cons_bounds_right: 0.0052 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.052 

Current progress: 59 percent done.
MTBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
MTBP   10000 perm   2 sec   (5274 perm/sec)   p_kst 6.287000e-01   p_cons 5.748000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000109/MTBP.4_2803_10000_0.6287_0.5748_0.8305.png
                gene_name: MTBP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 61 percent done.
MTERFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
Cons ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
KS ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
MTERFD1   10000 perm   2 sec   (5832 perm/sec)   p_kst 4.377000e-01   p_cons 9.926000e-01   p_joint 7.350000e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD1.4_1282_10000_0.4377_0.9926_0.735.png
                gene_name: MTERFD1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 63 percent done.
MTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
KS ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
MTF1   10000 perm   2 sec   (5756 perm/sec)   p_kst 8.921000e-01   p_cons 9.613000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTF1.4_2302_10000_0.8921_0.9613_1.png
                gene_name: MTF1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
MTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
KS ci ratio: 1.197531e-02	ci left: 9.090537e-01	ci right 9.201034e-01	k: 9147	n:10000
MTF2   10000 perm   2 sec   (5980 perm/sec)   p_kst 9.147000e-01   p_cons 7.484000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTF2.4_1842_10000_0.9147_0.7484_1.png
                gene_name: MTF2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
MTHFSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
MTHFSD   10000 perm   2 sec   (5857 perm/sec)   p_kst 3.412000e-01   p_cons 6.600000e-02   p_joint 2.593000e-01

Joint ci ratio: 6.224131e-02	ci left: 1.603241e-01	ci right 1.706734e-01	k: 3309	n:20000
Cons ci ratio: 1.022936e-01	ci left: 6.489067e-02	ci right 7.193544e-02	k: 1367	n:20000
KS ci ratio: 3.829878e-02	ci left: 3.371159e-01	ci right 3.503296e-01	k: 6874	n:20000
MTHFSD   20000 perm   4 sec   (5222 perm/sec)   p_kst 3.437000e-01   p_cons 6.835000e-02   p_joint 1.654500e-01

Joint ci ratio: 4.933880e-02	ci left: 1.695271e-01	ci right 1.781362e-01	k: 5214	n:30000
Cons ci ratio: 8.509146e-02	ci left: 6.324861e-02	ci right 6.890245e-02	k: 1981	n:30000
KS ci ratio: 3.111549e-02	ci left: 3.405824e-01	ci right 3.513808e-01	k: 10379	n:30000
MTHFSD   30000 perm   6 sec   (4983 perm/sec)   p_kst 3.459667e-01   p_cons 6.603333e-02   p_joint 1.738000e-01

Outputting figure to mutsig2_images.part000000000109/MTHFSD.4_1302_30000_0.34597_0.066033_0.1738.png
                gene_name: MTHFSD
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
MTUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
Cons ci ratio: 7.284938e-03	ci left: 9.629948e-01	ci right 9.701301e-01	k: 9667	n:10000
KS ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
MTUS1   10000 perm   2 sec   (4738 perm/sec)   p_kst 4.200000e-01   p_cons 9.667000e-01   p_joint 6.097000e-01

Outputting figure to mutsig2_images.part000000000109/MTUS1.4_4188_10000_0.42_0.9667_0.6097.png
                gene_name: MTUS1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 71 percent done.
MSRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
Cons ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
KS ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
MSRA   10000 perm   2 sec   (6330 perm/sec)   p_kst 4.486000e-01   p_cons 4.110000e-02   p_joint 1.379000e-01

Joint ci ratio: 8.175332e-02	ci left: 9.886943e-02	ci right 1.073463e-01	k: 2061	n:20000
Cons ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
KS ci ratio: 3.099985e-02	ci left: 4.373472e-01	ci right 4.511690e-01	k: 8885	n:20000
MSRA   20000 perm   4 sec   (5561 perm/sec)   p_kst 4.442500e-01   p_cons 4.040000e-02   p_joint 1.030500e-01

Joint ci ratio: 6.699348e-02	ci left: 9.899128e-02	ci right 1.058859e-01	k: 3072	n:30000
Cons ci ratio: 1.110656e-01	ci left: 3.764831e-02	ci right 4.210802e-02	k: 1195	n:30000
KS ci ratio: 2.530431e-02	ci left: 4.387661e-01	ci right 4.500447e-01	k: 13332	n:30000
MSRA   30000 perm   6 sec   (5298 perm/sec)   p_kst 4.444000e-01   p_cons 3.983333e-02   p_joint 1.024000e-01

Joint ci ratio: 5.784016e-02	ci left: 1.000130e-01	ci right 1.059948e-01	k: 4119	n:40000
Cons ci ratio: 9.680945e-02	ci left: 3.746566e-02	ci right 4.130158e-02	k: 1574	n:40000
KS ci ratio: 2.195114e-02	ci left: 4.386981e-01	ci right 4.484601e-01	k: 17743	n:40000
MSRA   40000 perm   8 sec   (5116 perm/sec)   p_kst 4.435750e-01   p_cons 3.935000e-02   p_joint 1.029750e-01

Outputting figure to mutsig2_images.part000000000109/MSRA.3_749_40000_0.44357_0.03935_0.10297.png
                gene_name: MSRA
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 73 percent done.
MSRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
MSRB2   10000 perm   2 sec   (6470 perm/sec)   p_kst 4.622000e-01   p_cons 2.302000e-01   p_joint 5.436000e-01

Outputting figure to mutsig2_images.part000000000109/MSRB2.3_569_10000_0.4622_0.2302_0.5436.png
                gene_name: MSRB2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
MTA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
Cons ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
MTA3   10000 perm   2 sec   (6121 perm/sec)   p_kst 6.047000e-01   p_cons 5.680000e-01   p_joint 8.191000e-01

Outputting figure to mutsig2_images.part000000000109/MTA3.3_1604_10000_0.6047_0.568_0.8191.png
                gene_name: MTA3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 76 percent done.
MTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KS ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
MTG1   10000 perm   2 sec   (6364 perm/sec)   p_kst 4.381000e-01   p_cons 6.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTG1.3_1049_10000_0.4381_0.6498_1.png
                gene_name: MTG1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MTMR14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
KS ci ratio: 1.579881e-02	ci left: 8.533504e-01	ci right 8.670391e-01	k: 8603	n:10000
MTMR14   10000 perm   2 sec   (5973 perm/sec)   p_kst 8.603000e-01   p_cons 4.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTMR14.3_2029_10000_0.8603_0.4555_1.png
                gene_name: MTMR14
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MTMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
Cons ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
KS ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
MTMR3   10000 perm   2 sec   (5161 perm/sec)   p_kst 2.937000e-01   p_cons 3.559000e-01   p_joint 4.574000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR3.3_3700_10000_0.2937_0.3559_0.4574.png
                gene_name: MTMR3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
MTSS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.181361e-02	ci left: 9.112147e-01	ci right 9.221412e-01	k: 9168	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
MTSS1L   10000 perm   2 sec   (5809 perm/sec)   p_kst 6.725000e-01   p_cons 9.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTSS1L.3_2304_10000_0.6725_0.9168_1.png
                gene_name: MTSS1L
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
Cons ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
KS ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
MTX2   10000 perm   2 sec   (6479 perm/sec)   p_kst 6.241000e-01   p_cons 7.898000e-01   p_joint 9.203000e-01

Outputting figure to mutsig2_images.part000000000109/MTX2.3_832_10000_0.6241_0.7898_0.9203.png
                gene_name: MTX2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 86 percent done.
MSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
KS ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
MSTN   10000 perm   1 sec   (6870 perm/sec)   p_kst 5.033000e-01   p_cons 4.652000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MSTN.2_1140_10000_0.5033_0.4652_1.png
                gene_name: MSTN
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
MTCP1NB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
MTCP1NB   10000 perm   1 sec   (7169 perm/sec)   p_kst 8.756000e-01   p_cons 7.016000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTCP1NB.2_215_10000_0.8756_0.7016_1.png
                gene_name: MTCP1NB
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
MTDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.750921e-02	ci left: 8.262552e-01	ci right 8.409500e-01	k: 8337	n:10000
Cons ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
KS ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
MTDH   10000 perm   2 sec   (6216 perm/sec)   p_kst 8.677000e-01   p_cons 3.765000e-01   p_joint 8.337000e-01

Outputting figure to mutsig2_images.part000000000109/MTDH.2_1797_10000_0.8677_0.3765_0.8337.png
                gene_name: MTDH
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
MTERFD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
Cons ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
MTERFD3   10000 perm   2 sec   (6113 perm/sec)   p_kst 6.560000e-02   p_cons 6.282000e-01   p_joint 2.155000e-01

Joint ci ratio: 2.520063e-03	ci left: 9.905048e-01	ci right 9.930491e-01	k: 19837	n:20000
Cons ci ratio: 2.122081e-02	ci left: 6.237169e-01	ci right 6.371452e-01	k: 12609	n:20000
KS ci ratio: 1.056486e-01	ci left: 6.098785e-02	ci right 6.783946e-02	k: 1287	n:20000
MTERFD3   20000 perm   4 sec   (5446 perm/sec)   p_kst 6.435000e-02   p_cons 6.304500e-01   p_joint 9.918500e-01

Joint ci ratio: 2.057709e-03	ci left: 9.907492e-01	ci right 9.928206e-01	k: 29755	n:30000
Cons ci ratio: 1.733381e-02	ci left: 6.247751e-01	ci right 6.357330e-01	k: 18908	n:30000
KS ci ratio: 8.733012e-02	ci left: 6.017846e-02	ci right 6.570655e-02	k: 1887	n:30000
MTERFD3   30000 perm   6 sec   (5255 perm/sec)   p_kst 6.290000e-02   p_cons 6.302667e-01   p_joint 9.918333e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD3.2_1162_30000_0.0629_0.63027_0.99183.png
                gene_name: MTERFD3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
MTIF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
MTIF2   10000 perm   2 sec   (5972 perm/sec)   p_kst 9.488000e-01   p_cons 8.870000e-02   p_joint 4.749000e-01

Joint ci ratio: 2.917663e-02	ci left: 4.674088e-01	ci right 4.812987e-01	k: 9487	n:20000
Cons ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
KS ci ratio: 6.517315e-03	ci left: 9.444725e-01	ci right 9.506966e-01	k: 18953	n:20000
MTIF2   20000 perm   4 sec   (5293 perm/sec)   p_kst 9.476500e-01   p_cons 8.885000e-02   p_joint 4.743500e-01

Outputting figure to mutsig2_images.part000000000109/MTIF2.2_2236_20000_0.94765_0.08885_0.47435.png
                gene_name: MTIF2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 96 percent done.
MTMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549987e-03	ci left: 9.843657e-01	ci right 9.889443e-01	k: 9868	n:10000
Cons ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
KS ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
MTMR2   10000 perm   2 sec   (6308 perm/sec)   p_kst 6.982000e-01   p_cons 1.273000e-01   p_joint 9.868000e-01

Joint ci ratio: 3.162106e-03	ci left: 9.855443e-01	ci right 9.887118e-01	k: 19744	n:20000
Cons ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
KS ci ratio: 1.814990e-02	ci left: 6.934947e-01	ci right 7.062472e-01	k: 13998	n:20000
MTMR2   20000 perm   4 sec   (5581 perm/sec)   p_kst 6.999000e-01   p_cons 1.298000e-01   p_joint 9.872000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR2.2_1992_20000_0.6999_0.1298_0.9872.png
                gene_name: MTMR2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
MTMR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
KS ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
MTMR9   10000 perm   2 sec   (6214 perm/sec)   p_kst 5.047000e-01   p_cons 7.782000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTMR9.2_1690_10000_0.5047_0.7782_1.png
                gene_name: MTMR9
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000109
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 109 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 4422205: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000110> was used as the working directory.
Started at Wed Oct 24 18:00:35 2012
Results reported at Wed Oct 24 18:14:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000110.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000110.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 110  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000110.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    877.35 sec.
    Max Memory :      5284 MB
    Max Swap   :      7639 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
110
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 110
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 110: processing genes 9862 - 9952
Calculating significance of each gene.
Using projection method.
9862	MUC2	5.431964e-01
9863	MUC20	9.070113e-01
9864	MUC21	6.692662e-01
9865	MUC4	7.717022e-01
9866	MUC5B	1
9867	MUC6	9.999801e-01
9868	MUC7	2.856954e-10
9869	MUCL1	2.723157e-01
9870	MUDENG	2.385021e-01
9871	MUL1	6.394227e-01
9872	MUM1	1
9873	MUM1L1	3.263906e-01
9874	MURC	1.760588e-01
9875	MUS81	9.079075e-01
9876	MUSK	9.846520e-01
9877	MUSTN1	1
9878	MUT	9.256172e-01
9879	MUTED	1
9880	MUTYH	8.656817e-01
9881	MVD	3.931356e-01
9882	MVK	9.361625e-01
9883	MVP	9.155632e-01
9884	MX1	1
9885	MX2	1.810878e-01
9886	MXD1	1
9887	MXD3	1
9888	MXD4	1
9889	MXI1	7.045379e-01
9890	MXRA5	1
9891	MXRA7	3.254590e-01
9892	MXRA8	8.103739e-01
9893	MYADM	8.152585e-01
9894	MYB	9.749934e-01
9895	MYBBP1A	7.919681e-01
9896	MYBL1	4.566910e-01
9897	MYBL2	2.248954e-01
9898	MYBPC1	7.513294e-01
9899	MYBPC2	9.864194e-01
9900	MYBPC3	9.257274e-01
9901	MYBPH	5.864799e-01
9902	MYBPHL	1.737594e-01
9903	MYC	1
9904	MYCBP	1
9905	MYCBP2	9.999996e-01
9906	MYCBPAP	9.534855e-01
9907	MYCL1	2.678499e-01
9908	MYCN	5.958025e-01
9909	MYCT1	2.450691e-01
9910	MYD88	4.408417e-01
9911	MYEF2	4.227742e-01
9912	MYEOV	2.435744e-02
9913	MYEOV2	4.328344e-01
9914	MYF5	2.761831e-01
9915	MYF6	8.252390e-02
9916	MYH1	1
9917	MYH10	9.992020e-01
9918	MYH11	9.999265e-01
9919	MYH13	1
9920	MYH14	9.955777e-01
9921	MYH15	9.462196e-01
9922	MYH2	9.999879e-01
9923	MYH3	1
9924	MYH4	1
9925	MYH6	1
9926	MYH7	9.999850e-01
9927	MYH7B	9.941074e-01
9928	MYH8	2.759987e-01
9929	MYH9	9.815807e-01
9930	MYL1	3.935490e-02
9931	MYL10	2.788049e-05
9932	MYL12A	1
9933	MYL12B	5.570102e-01
9934	MYL2	1.612126e-01
9935	MYL3	1.910732e-01
9936	MYL4	1
9937	MYL5	7.218616e-01
9938	MYL6	1
9939	MYL6B	1
9940	MYL7	1.114000e-01
9941	MYL9	1
9942	MYLIP	6.587537e-02
9943	MYLK	8.356463e-01
9944	MYLK2	1
9945	MYLK3	5.271808e-01
9946	MYLK4	1
9947	MYLPF	7.490253e-01
9948	MYNN	1
9949	MYO10	1
9950	MYO15A	9.999404e-01
9951	MYO16	9.756147e-01
9952	MYO18A	9.995380e-01
Done

Running MutSig 2:
Scatter job 110: processing genes 9862 - 9952
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MXRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
Cons ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
KS ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
MXRA5   10000 perm   3 sec   (2880 perm/sec)   p_kst 5.990000e-01   p_cons 3.341000e-01   p_joint 6.154000e-01

Outputting figure to mutsig2_images.part000000000110/MXRA5.42_8511_10000_0.599_0.3341_0.6154.png
                gene_name: MXRA5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 1 percent done.
MYH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
Cons ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MYH2   10000 perm   3 sec   (3202 perm/sec)   p_kst 1   p_cons 5.131000e-01   p_joint 9.464000e-01

Outputting figure to mutsig2_images.part000000000110/MYH2.37_5978_10000_1_0.5131_0.9464.png
                gene_name: MYH2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 3 percent done.
MYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
KS ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
MYH1   10000 perm   3 sec   (3237 perm/sec)   p_kst 4.592000e-01   p_cons 9.560000e-02   p_joint 2.782000e-01

Joint ci ratio: 5.479509e-02	ci left: 1.981367e-01	ci right 2.093496e-01	k: 4074	n:20000
Cons ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
KS ci ratio: 2.994235e-02	ci left: 4.545221e-01	ci right 4.683891e-01	k: 9229	n:20000
MYH1   20000 perm   7 sec   (3005 perm/sec)   p_kst 4.614500e-01   p_cons 9.550000e-02   p_joint 2.037000e-01

Outputting figure to mutsig2_images.part000000000110/MYH1.36_5972_20000_0.46145_0.0955_0.2037.png
                gene_name: MYH1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 4 percent done.
MYH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
KS ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
MYH8   10000 perm   3 sec   (3505 perm/sec)   p_kst 2.172000e-01   p_cons 1.589000e-01   p_joint 1.293000e-01

Joint ci ratio: 6.535564e-02	ci left: 1.474447e-01	ci right 1.574565e-01	k: 3048	n:20000
Cons ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
KS ci ratio: 5.267554e-02	ci left: 2.111057e-01	ci right 2.225768e-01	k: 4336	n:20000
MYH8   20000 perm   6 sec   (3246 perm/sec)   p_kst 2.168000e-01   p_cons 1.305000e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000110/MYH8.28_5966_20000_0.2168_0.1305_0.1524.png
                gene_name: MYH8
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 6 percent done.
MYO16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
KS ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
MYO16   10000 perm   3 sec   (3703 perm/sec)   p_kst 6.080000e-02   p_cons 1.314000e-01   p_joint 2.820000e-02

Joint ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
Cons ci ratio: 6.990824e-02	ci left: 1.310804e-01	ci right 1.406257e-01	k: 2716	n:20000
KS ci ratio: 1.123232e-01	ci left: 5.416716e-02	ci right 6.066226e-02	k: 1147	n:20000
MYO16   20000 perm   6 sec   (3423 perm/sec)   p_kst 5.735000e-02   p_cons 1.358000e-01   p_joint 8.515000e-02

Joint ci ratio: 7.711554e-02	ci left: 7.623382e-02	ci right 8.238128e-02	k: 2378	n:30000
Cons ci ratio: 5.743537e-02	ci left: 1.305263e-01	ci right 1.382780e-01	k: 4031	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
MYO16   30000 perm   9 sec   (3308 perm/sec)   p_kst 5.750000e-02   p_cons 1.343667e-01   p_joint 7.926667e-02

Outputting figure to mutsig2_images.part000000000110/MYO16.25_5713_30000_0.0575_0.13437_0.079267.png
                gene_name: MYO16
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 7 percent done.
MYH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
MYH4   10000 perm   3 sec   (3809 perm/sec)   p_kst 6.405000e-01   p_cons 2.194000e-01   p_joint 5.203000e-01

Outputting figure to mutsig2_images.part000000000110/MYH4.24_5972_10000_0.6405_0.2194_0.5203.png
                gene_name: MYH4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 9 percent done.
MUC5B
Processing conservation and coverage...
57% 
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
Cons ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
MUC5B   10000 perm   4 sec   (2374 perm/sec)   p_kst 1.200000e-02   p_cons 9.214000e-01   p_joint 4.860000e-02

Joint ci ratio: 1.253030e-01	ci left: 4.371988e-02	ci right 4.961282e-02	k: 932	n:20000
Cons ci ratio: 8.710637e-03	ci left: 9.061019e-01	ci right 9.140784e-01	k: 18203	n:20000
KS ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
MUC5B   20000 perm   9 sec   (2270 perm/sec)   p_kst 1.215000e-02   p_cons 9.101500e-01   p_joint 4.660000e-02

Joint ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
Cons ci ratio: 7.068963e-03	ci left: 9.078568e-01	ci right 9.143300e-01	k: 27334	n:30000
KS ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
MUC5B   30000 perm   14 sec   (2219 perm/sec)   p_kst 1.180000e-02   p_cons 9.111333e-01   p_joint 3.140000e-02

Joint ci ratio: 1.131618e-01	ci left: 2.747453e-02	ci right 3.079429e-02	k: 1164	n:40000
Cons ci ratio: 6.027077e-03	ci left: 9.108294e-01	ci right 9.163603e-01	k: 36545	n:40000
KS ci ratio: 1.791708e-01	ci left: 1.076482e-02	ci right 1.290693e-02	k: 472	n:40000
MUC5B   40000 perm   18 sec   (2183 perm/sec)   p_kst 1.180000e-02   p_cons 9.136250e-01   p_joint 2.910000e-02

Joint ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
Cons ci ratio: 5.381968e-03	ci left: 9.113869e-01	ci right 9.163249e-01	k: 45694	n:50000
KS ci ratio: 1.669951e-01	ci left: 9.989194e-03	ci right 1.182825e-02	k: 544	n:50000
MUC5B   50000 perm   23 sec   (2155 perm/sec)   p_kst 1.088000e-02   p_cons 9.138800e-01   p_joint 3.222000e-02

Joint ci ratio: 8.013698e-02	ci left: 3.681108e-02	ci right 3.990045e-02	k: 2300	n:60000
Cons ci ratio: 4.911836e-03	ci left: 9.116439e-01	ci right 9.161493e-01	k: 54835	n:60000
KS ci ratio: 1.477217e-01	ci left: 1.074252e-02	ci right 1.247187e-02	k: 695	n:60000
MUC5B   60000 perm   28 sec   (2129 perm/sec)   p_kst 1.158333e-02   p_cons 9.139167e-01   p_joint 3.833333e-02

Joint ci ratio: 7.437275e-02	ci left: 3.674999e-02	ci right 3.960275e-02	k: 2671	n:70000
Cons ci ratio: 4.567291e-03	ci left: 9.111189e-01	ci right 9.153039e-01	k: 63926	n:70000
KS ci ratio: 1.405792e-01	ci left: 1.021293e-02	ci right 1.177086e-02	k: 768	n:70000
MUC5B   70000 perm   33 sec   (2108 perm/sec)   p_kst 1.097143e-02   p_cons 9.132286e-01   p_joint 3.815714e-02

Joint ci ratio: 6.970852e-02	ci left: 3.669792e-02	ci right 3.936072e-02	k: 3041	n:80000
Cons ci ratio: 4.269008e-03	ci left: 9.113793e-01	ci right 9.152907e-01	k: 73068	n:80000
KS ci ratio: 1.317166e-01	ci left: 1.022830e-02	ci right 1.168250e-02	k: 875	n:80000
MUC5B   80000 perm   38 sec   (2087 perm/sec)   p_kst 1.093750e-02   p_cons 9.133500e-01   p_joint 3.801250e-02

Joint ci ratio: 6.896318e-02	ci left: 3.345913e-02	ci right 3.585987e-02	k: 3118	n:90000
Cons ci ratio: 4.053165e-03	ci left: 9.103659e-01	ci right 9.140742e-01	k: 82101	n:90000
KS ci ratio: 1.243432e-01	ci left: 1.024265e-02	ci right 1.161137e-02	k: 982	n:90000
MUC5B   90000 perm   44 sec   (2068 perm/sec)   p_kst 1.091111e-02   p_cons 9.122333e-01   p_joint 3.464444e-02

Joint ci ratio: 7.053553e-02	ci left: 2.890221e-02	ci right 3.102517e-02	k: 2995	n:100000
Cons ci ratio: 3.840430e-03	ci left: 9.106610e-01	ci right 9.141750e-01	k: 91243	n:100000
KS ci ratio: 1.173783e-01	ci left: 1.038217e-02	ci right 1.168642e-02	k: 1102	n:100000
MUC5B   100000 perm   49 sec   (2050 perm/sec)   p_kst 1.102000e-02   p_cons 9.124300e-01   p_joint 2.995000e-02

Joint ci ratio: 6.538068e-02	ci left: 3.060984e-02	ci right 3.268768e-02	k: 3480	n:110000
Cons ci ratio: 3.657589e-03	ci left: 9.109248e-01	ci right 9.142716e-01	k: 100387	n:110000
KS ci ratio: 1.125412e-01	ci left: 1.029478e-02	ci right 1.153121e-02	k: 1199	n:110000
MUC5B   110000 perm   54 sec   (2034 perm/sec)   p_kst 1.090000e-02   p_cons 9.126091e-01   p_joint 3.163636e-02

Joint ci ratio: 6.268642e-02	ci left: 3.056817e-02	ci right 3.255456e-02	k: 3786	n:120000
Cons ci ratio: 3.448011e-03	ci left: 9.134583e-01	ci right 9.166216e-01	k: 109806	n:120000
KS ci ratio: 1.073812e-01	ci left: 1.039320e-02	ci right 1.158061e-02	k: 1317	n:120000
MUC5B   120000 perm   59 sec   (2018 perm/sec)   p_kst 1.097500e-02   p_cons 9.150500e-01   p_joint 3.155000e-02

Joint ci ratio: 6.248509e-02	ci left: 2.846567e-02	ci right 3.030925e-02	k: 3819	n:130000
Cons ci ratio: 3.308388e-03	ci left: 9.137268e-01	ci right 9.167624e-01	k: 118983	n:130000
KS ci ratio: 1.035296e-01	ci left: 1.034265e-02	ci right 1.147932e-02	k: 1417	n:130000
MUC5B   130000 perm   65 sec   (2005 perm/sec)   p_kst 1.090000e-02   p_cons 9.152538e-01   p_joint 2.937692e-02

Joint ci ratio: 6.165416e-02	ci left: 2.719834e-02	ci right 2.893557e-02	k: 3928	n:140000
Cons ci ratio: 3.186647e-03	ci left: 9.138509e-01	ci right 9.167747e-01	k: 128145	n:140000
KS ci ratio: 9.999822e-02	ci left: 1.031391e-02	ci right 1.140649e-02	k: 1519	n:140000
MUC5B   140000 perm   70 sec   (1990 perm/sec)   p_kst 1.085000e-02   p_cons 9.153214e-01   p_joint 2.805714e-02

Outputting figure to mutsig2_images.part000000000110/MUC5B.21_17494_140000_0.01085_0.91532_0.028057.png
                gene_name: MUC5B
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 10 percent done.
MYCBP2
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
Cons ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
KS ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
MYCBP2   10000 perm   4 sec   (2838 perm/sec)   p_kst 6.550000e-01   p_cons 3.364000e-01   p_joint 6.491000e-01

Outputting figure to mutsig2_images.part000000000110/MYCBP2.22_14369_10000_0.655_0.3364_0.6491.png
                gene_name: MYCBP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 12 percent done.
MYH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
MYH6   10000 perm   2 sec   (4113 perm/sec)   p_kst 5.844000e-01   p_cons 3.178000e-01   p_joint 5.529000e-01

Outputting figure to mutsig2_images.part000000000110/MYH6.21_5968_10000_0.5844_0.3178_0.5529.png
                gene_name: MYH6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 13 percent done.
MYH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
Cons ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
KS ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
MYH7   10000 perm   3 sec   (3889 perm/sec)   p_kst 1.442000e-01   p_cons 1.777000e-01   p_joint 1.736000e-01

Outputting figure to mutsig2_images.part000000000110/MYH7.20_5960_10000_0.1442_0.1777_0.1736.png
                gene_name: MYH7
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
MUC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
Cons ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
KS ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
MUC2   10000 perm   3 sec   (3440 perm/sec)   p_kst 9.629000e-01   p_cons 2.180000e-01   p_joint 6.356000e-01

Outputting figure to mutsig2_images.part000000000110/MUC2.19_8642_10000_0.9629_0.218_0.6356.png
                gene_name: MUC2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 16 percent done.
MUC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
MUC7   10000 perm   2 sec   (5056 perm/sec)   p_kst 3.800000e-02   p_cons 5.736000e-01   p_joint 1.078000e-01

Joint ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
Cons ci ratio: 2.504547e-02	ci left: 5.435740e-01	ci right 5.574113e-01	k: 11010	n:20000
KS ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
MUC7   20000 perm   4 sec   (4579 perm/sec)   p_kst 3.745000e-02   p_cons 5.505000e-01   p_joint 1.121500e-01

Joint ci ratio: 7.243733e-02	ci left: 8.570277e-02	ci right 9.217710e-02	k: 2667	n:30000
Cons ci ratio: 2.124043e-02	ci left: 5.260006e-01	ci right 5.373266e-01	k: 15950	n:30000
KS ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
MUC7   30000 perm   7 sec   (4432 perm/sec)   p_kst 3.716667e-02   p_cons 5.316667e-01   p_joint 8.890000e-02

Joint ci ratio: 6.669295e-02	ci left: 7.684245e-02	ci right 8.216878e-02	k: 3179	n:40000
Cons ci ratio: 1.843995e-02	ci left: 5.255446e-01	ci right 5.353510e-01	k: 21218	n:40000
KS ci ratio: 9.626987e-02	ci left: 3.788079e-02	ci right 4.173638e-02	k: 1591	n:40000
MUC7   40000 perm   9 sec   (4312 perm/sec)   p_kst 3.977500e-02   p_cons 5.304500e-01   p_joint 7.947500e-02

Outputting figure to mutsig2_images.part000000000110/MUC7.19_1142_40000_0.039775_0.53045_0.079475.png
                gene_name: MUC7
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 18 percent done.
MYH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
Cons ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
KS ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
MYH13   10000 perm   3 sec   (3305 perm/sec)   p_kst 3.030000e-01   p_cons 9.097000e-01   p_joint 4.737000e-01

Outputting figure to mutsig2_images.part000000000110/MYH13.18_5973_10000_0.303_0.9097_0.4737.png
                gene_name: MYH13
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 19 percent done.
MYLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
Cons ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
KS ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
MYLK   10000 perm   3 sec   (3720 perm/sec)   p_kst 5.740000e-02   p_cons 9.700000e-01   p_joint 1.056000e-01

Joint ci ratio: 6.419219e-02	ci left: 1.520819e-01	ci right 1.622180e-01	k: 3142	n:20000
Cons ci ratio: 5.139901e-03	ci left: 9.642232e-01	ci right 9.692399e-01	k: 19336	n:20000
KS ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
MYLK   20000 perm   6 sec   (3365 perm/sec)   p_kst 5.780000e-02   p_cons 9.668000e-01   p_joint 1.571000e-01

Joint ci ratio: 4.551053e-02	ci left: 1.937348e-01	ci right 2.027904e-01	k: 5947	n:30000
Cons ci ratio: 4.208843e-03	ci left: 9.645044e-01	ci right 9.686046e-01	k: 28998	n:30000
KS ci ratio: 8.871728e-02	ci left: 5.838299e-02	ci right 6.383572e-02	k: 1832	n:30000
MYLK   30000 perm   9 sec   (3244 perm/sec)   p_kst 6.106667e-02   p_cons 9.666000e-01   p_joint 1.982333e-01

Outputting figure to mutsig2_images.part000000000110/MYLK.16_5869_30000_0.061067_0.9666_0.19823.png
                gene_name: MYLK
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 21 percent done.
MYH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
MYH11   10000 perm   3 sec   (3772 perm/sec)   p_kst 4.289000e-01   p_cons 3.096000e-01   p_joint 6.076000e-01

Outputting figure to mutsig2_images.part000000000110/MYH11.15_6139_10000_0.4289_0.3096_0.6076.png
                gene_name: MYH11
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 22 percent done.
MYH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
MYH15   10000 perm   3 sec   (3744 perm/sec)   p_kst 9.744000e-01   p_cons 1.627000e-01   p_joint 4.131000e-01

Outputting figure to mutsig2_images.part000000000110/MYH15.15_6009_10000_0.9744_0.1627_0.4131.png
                gene_name: MYH15
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 24 percent done.
MUC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 1.358404e-03	ci left: 9.980327e-01	ci right 9.994508e-01	k: 9989	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
MUC6   10000 perm   3 sec   (3650 perm/sec)   p_kst 1.060000e-02   p_cons 9.989000e-01   p_joint 3.700000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 8.985444e-04	ci left: 9.984560e-01	ci right 9.993891e-01	k: 19980	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
MUC6   20000 perm   6 sec   (3365 perm/sec)   p_kst 1.220000e-02   p_cons 9.990000e-01   p_joint 3.490000e-02

Joint ci ratio: 1.306482e-01	ci left: 2.722700e-02	ci right 3.106491e-02	k: 873	n:30000
Cons ci ratio: 7.622796e-04	ci left: 9.984555e-01	ci right 9.992427e-01	k: 29967	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
MUC6   30000 perm   9 sec   (3260 perm/sec)   p_kst 1.223333e-02   p_cons 9.989000e-01   p_joint 2.910000e-02

Joint ci ratio: 1.124676e-01	ci left: 2.781493e-02	ci right 3.115384e-02	k: 1178	n:40000
Cons ci ratio: 6.503756e-04	ci left: 9.985523e-01	ci right 9.992219e-01	k: 39957	n:40000
KS ci ratio: 1.823171e-01	ci left: 1.038273e-02	ci right 1.248909e-02	k: 456	n:40000
MUC6   40000 perm   13 sec   (3197 perm/sec)   p_kst 1.140000e-02   p_cons 9.989250e-01   p_joint 2.945000e-02

Joint ci ratio: 9.549734e-02	ci left: 3.104105e-02	ci right 3.417352e-02	k: 1629	n:50000
Cons ci ratio: 5.817209e-04	ci left: 9.985911e-01	ci right 9.991886e-01	k: 49946	n:50000
KS ci ratio: 1.621038e-01	ci left: 1.062229e-02	ci right 1.251505e-02	k: 577	n:50000
MUC6   50000 perm   16 sec   (3146 perm/sec)   p_kst 1.154000e-02   p_cons 9.989200e-01   p_joint 3.258000e-02

Joint ci ratio: 9.896315e-02	ci left: 2.422079e-02	ci right 2.675873e-02	k: 1528	n:60000
Cons ci ratio: 5.188181e-04	ci left: 9.986755e-01	ci right 9.992077e-01	k: 59938	n:60000
KS ci ratio: 1.486974e-01	ci left: 1.059802e-02	ci right 1.231639e-02	k: 686	n:60000
MUC6   60000 perm   19 sec   (3108 perm/sec)   p_kst 1.143333e-02   p_cons 9.989667e-01   p_joint 2.546667e-02

Joint ci ratio: 8.940529e-02	ci left: 2.553228e-02	ci right 2.793574e-02	k: 1870	n:70000
Cons ci ratio: 4.916509e-04	ci left: 9.986413e-01	ci right 9.991445e-01	k: 69924	n:70000
KS ci ratio: 1.368492e-01	ci left: 1.079233e-02	ci right 1.239140e-02	k: 810	n:70000
MUC6   70000 perm   23 sec   (3073 perm/sec)   p_kst 1.157143e-02   p_cons 9.989143e-01   p_joint 2.671429e-02

Joint ci ratio: 8.436947e-02	ci left: 2.516532e-02	ci right 2.739421e-02	k: 2101	n:80000
Cons ci ratio: 4.439276e-04	ci left: 9.987417e-01	ci right 9.991959e-01	k: 79919	n:80000
KS ci ratio: 1.293486e-01	ci left: 1.061537e-02	ci right 1.209539e-02	k: 907	n:80000
MUC6   80000 perm   26 sec   (3037 perm/sec)   p_kst 1.133750e-02   p_cons 9.989875e-01   p_joint 2.626250e-02

Joint ci ratio: 8.104839e-02	ci left: 2.430561e-02	ci right 2.636959e-02	k: 2279	n:90000
Cons ci ratio: 4.133996e-04	ci left: 9.987832e-01	ci right 9.992058e-01	k: 89911	n:90000
KS ci ratio: 1.222845e-01	ci left: 1.059813e-02	ci right 1.198920e-02	k: 1015	n:90000
MUC6   90000 perm   30 sec   (2960 perm/sec)   p_kst 1.127778e-02   p_cons 9.990111e-01   p_joint 2.532222e-02

Joint ci ratio: 7.527874e-02	ci left: 2.540527e-02	ci right 2.740233e-02	k: 2639	n:100000
Cons ci ratio: 3.960928e-04	ci left: 9.987729e-01	ci right 9.991773e-01	k: 99899	n:100000
KS ci ratio: 1.145751e-01	ci left: 1.090667e-02	ci right 1.224188e-02	k: 1156	n:100000
MUC6   100000 perm   34 sec   (2931 perm/sec)   p_kst 1.156000e-02   p_cons 9.989900e-01   p_joint 2.639000e-02

Joint ci ratio: 7.370096e-02	ci left: 2.414786e-02	ci right 2.600457e-02	k: 2757	n:110000
Cons ci ratio: 4.367425e-04	ci left: 9.984098e-01	ci right 9.988541e-01	k: 109851	n:110000
KS ci ratio: 1.083721e-01	ci left: 1.111713e-02	ci right 1.239972e-02	k: 1292	n:110000
MUC6   110000 perm   38 sec   (2899 perm/sec)   p_kst 1.174545e-02   p_cons 9.986455e-01   p_joint 2.506364e-02

Joint ci ratio: 6.793104e-02	ci left: 2.608203e-02	ci right 2.792426e-02	k: 3239	n:120000
Cons ci ratio: 4.287177e-04	ci left: 9.983449e-01	ci right 9.987805e-01	k: 119829	n:120000
KS ci ratio: 1.032612e-01	ci left: 1.125352e-02	ci right 1.248690e-02	k: 1423	n:120000
MUC6   120000 perm   42 sec   (2863 perm/sec)   p_kst 1.185833e-02   p_cons 9.985750e-01   p_joint 2.699167e-02

Joint ci ratio: 6.699253e-02	ci left: 2.480117e-02	ci right 2.652777e-02	k: 3335	n:130000
Cons ci ratio: 4.093086e-04	ci left: 9.983731e-01	ci right 9.987888e-01	k: 129817	n:130000
KS ci ratio: 9.910187e-02	ci left: 1.130260e-02	ci right 1.248855e-02	k: 1545	n:130000
MUC6   130000 perm   46 sec   (2826 perm/sec)   p_kst 1.188462e-02   p_cons 9.985923e-01   p_joint 2.565385e-02

Outputting figure to mutsig2_images.part000000000110/MUC6.14_7452_130000_0.011885_0.99859_0.025654.png
                gene_name: MUC6
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 25 percent done.
MUC4
Processing conservation and coverage...
Processing mutations... 
Skipping 7 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
Cons ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
KS ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
MUC4   10000 perm   2 sec   (4843 perm/sec)   p_kst 3.401000e-01   p_cons 4.430000e-01   p_joint 7.476000e-01

Outputting figure to mutsig2_images.part000000000110/MUC4.4_3627_10000_0.3401_0.443_0.7476.png
                gene_name: MUC4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 27 percent done.
MYH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
Cons ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
KS ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
MYH3   10000 perm   3 sec   (3833 perm/sec)   p_kst 3.579000e-01   p_cons 8.330000e-02   p_joint 1.845000e-01

Joint ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
Cons ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
KS ci ratio: 3.773681e-02	ci left: 3.437851e-01	ci right 3.570585e-01	k: 7008	n:20000
MYH3   20000 perm   6 sec   (3525 perm/sec)   p_kst 3.504000e-01   p_cons 8.990000e-02   p_joint 1.476500e-01

Outputting figure to mutsig2_images.part000000000110/MYH3.11_5979_20000_0.3504_0.0899_0.14765.png
                gene_name: MYH3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
MYO18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
MYO18A   10000 perm   3 sec   (3870 perm/sec)   p_kst 6.776000e-01   p_cons 2.401000e-01   p_joint 5.674000e-01

Outputting figure to mutsig2_images.part000000000110/MYO18A.11_6329_10000_0.6776_0.2401_0.5674.png
                gene_name: MYO18A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 30 percent done.
MUSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
MUSK   10000 perm   2 sec   (4908 perm/sec)   p_kst 5.976000e-01   p_cons 1.249000e-01   p_joint 3.357000e-01

Joint ci ratio: 2.929683e-02	ci left: 4.653606e-01	ci right 4.792475e-01	k: 9446	n:20000
Cons ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
KS ci ratio: 2.422373e-02	ci left: 5.600486e-01	ci right 5.738320e-01	k: 11339	n:20000
MUSK   20000 perm   5 sec   (4444 perm/sec)   p_kst 5.669500e-01   p_cons 1.295000e-01   p_joint 4.723000e-01

Outputting figure to mutsig2_images.part000000000110/MUSK.9_2702_20000_0.56695_0.1295_0.4723.png
                gene_name: MUSK
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 31 percent done.
MYO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
MYO10   10000 perm   3 sec   (3900 perm/sec)   p_kst 7.520000e-02   p_cons 8.200000e-02   p_joint 3.950000e-02

Joint ci ratio: 1.232388e-01	ci left: 4.517535e-02	ci right 5.115689e-02	k: 962	n:20000
Cons ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
KS ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
MYO10   20000 perm   6 sec   (3616 perm/sec)   p_kst 8.015000e-02   p_cons 8.175000e-02   p_joint 4.810000e-02

Joint ci ratio: 1.311124e-01	ci left: 2.703337e-02	ci right 3.085858e-02	k: 867	n:30000
Cons ci ratio: 7.470326e-02	ci left: 8.091761e-02	ci right 8.722988e-02	k: 2521	n:30000
KS ci ratio: 7.722136e-02	ci left: 7.603736e-02	ci right 8.217777e-02	k: 2372	n:30000
MYO10   30000 perm   9 sec   (3504 perm/sec)   p_kst 7.906667e-02   p_cons 8.403333e-02   p_joint 2.890000e-02

Joint ci ratio: 1.039588e-01	ci left: 3.253782e-02	ci right 3.613020e-02	k: 1372	n:40000
Cons ci ratio: 6.436827e-02	ci left: 8.211227e-02	ci right 8.759817e-02	k: 3393	n:40000
KS ci ratio: 6.362348e-02	ci left: 8.391068e-02	ci right 8.944950e-02	k: 3466	n:40000
MYO10   40000 perm   12 sec   (3424 perm/sec)   p_kst 8.665000e-02   p_cons 8.482500e-02   p_joint 3.430000e-02

Joint ci ratio: 9.752579e-02	ci left: 2.977147e-02	ci right 3.284327e-02	k: 1564	n:50000
Cons ci ratio: 5.728195e-02	ci left: 8.318158e-02	ci right 8.810665e-02	k: 4281	n:50000
KS ci ratio: 5.694806e-02	ci left: 8.408962e-02	ci right 8.903850e-02	k: 4327	n:50000
MYO10   50000 perm   15 sec   (3363 perm/sec)   p_kst 8.654000e-02   p_cons 8.562000e-02   p_joint 3.128000e-02

Outputting figure to mutsig2_images.part000000000110/MYO10.9_6341_50000_0.08654_0.08562_0.03128.png
                gene_name: MYO10
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 33 percent done.
MYBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
Cons ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
MYBL2   10000 perm   2 sec   (5453 perm/sec)   p_kst 1.820000e-02   p_cons 8.442000e-01   p_joint 5.670000e-02

Joint ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
Cons ci ratio: 1.157172e-02	ci left: 8.465971e-01	ci right 8.565005e-01	k: 17032	n:20000
KS ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
MYBL2   20000 perm   4 sec   (4907 perm/sec)   p_kst 1.785000e-02   p_cons 8.516000e-01   p_joint 5.490000e-02

Joint ci ratio: 8.936817e-02	ci left: 5.756710e-02	ci right 6.298511e-02	k: 1807	n:30000
Cons ci ratio: 9.446825e-03	ci left: 8.475603e-01	ci right 8.556382e-01	k: 25549	n:30000
KS ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
MYBL2   30000 perm   6 sec   (4710 perm/sec)   p_kst 1.800000e-02   p_cons 8.516333e-01   p_joint 6.023333e-02

Joint ci ratio: 7.792418e-02	ci left: 5.717677e-02	ci right 6.183743e-02	k: 2379	n:40000
Cons ci ratio: 8.170850e-03	ci left: 8.484316e-01	ci right 8.554173e-01	k: 34078	n:40000
KS ci ratio: 1.437540e-01	ci left: 1.693670e-02	ci right 1.958390e-02	k: 729	n:40000
MYBL2   40000 perm   9 sec   (4582 perm/sec)   p_kst 1.822500e-02   p_cons 8.519500e-01   p_joint 5.947500e-02

Joint ci ratio: 7.007410e-02	ci left: 5.683232e-02	ci right 6.097908e-02	k: 2944	n:50000
Cons ci ratio: 7.316582e-03	ci left: 8.485141e-01	ci right 8.547650e-01	k: 42583	n:50000
KS ci ratio: 1.291920e-01	ci left: 1.691079e-02	ci right 1.926563e-02	k: 903	n:50000
MYBL2   50000 perm   11 sec   (4475 perm/sec)   p_kst 1.806000e-02   p_cons 8.516600e-01   p_joint 5.888000e-02

Joint ci ratio: 6.500106e-02	ci left: 5.528932e-02	ci right 5.902032e-02	k: 3428	n:60000
Cons ci ratio: 6.670518e-03	ci left: 8.491165e-01	ci right 8.548161e-01	k: 51119	n:60000
KS ci ratio: 1.177591e-01	ci left: 1.706450e-02	ci right 1.921580e-02	k: 1087	n:60000
MYBL2   60000 perm   14 sec   (4382 perm/sec)   p_kst 1.811667e-02   p_cons 8.519833e-01   p_joint 5.713333e-02

Joint ci ratio: 6.321532e-02	ci left: 5.042297e-02	ci right 5.372857e-02	k: 3644	n:70000
Cons ci ratio: 6.187510e-03	ci left: 8.488441e-01	ci right 8.541268e-01	k: 59605	n:70000
KS ci ratio: 1.090822e-01	ci left: 1.712529e-02	ci right 1.911494e-02	k: 1267	n:70000
MYBL2   70000 perm   16 sec   (4290 perm/sec)   p_kst 1.810000e-02   p_cons 8.515000e-01   p_joint 5.205714e-02

Joint ci ratio: 7.591984e-02	ci left: 3.102427e-02	ci right 3.348480e-02	k: 2579	n:80000
Cons ci ratio: 5.663454e-03	ci left: 8.544669e-01	ci right 8.593322e-01	k: 68553	n:80000
KS ci ratio: 1.021500e-01	ci left: 1.715090e-02	ci right 1.900928e-02	k: 1445	n:80000
MYBL2   80000 perm   19 sec   (4208 perm/sec)   p_kst 1.806250e-02   p_cons 8.569125e-01   p_joint 3.223750e-02

Joint ci ratio: 6.839728e-02	ci left: 3.400547e-02	ci right 3.642461e-02	k: 3168	n:90000
Cons ci ratio: 5.337156e-03	ci left: 8.547182e-01	ci right 8.593032e-01	k: 77132	n:90000
KS ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
MYBL2   90000 perm   22 sec   (4138 perm/sec)   p_kst 1.821111e-02   p_cons 8.570222e-01   p_joint 3.520000e-02

Outputting figure to mutsig2_images.part000000000110/MYBL2.8_2159_90000_0.018211_0.85702_0.0352.png
                gene_name: MYBL2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 34 percent done.
MYH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
Cons ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
MYH9   10000 perm   2 sec   (4077 perm/sec)   p_kst 2.055000e-01   p_cons 6.407000e-01   p_joint 3.293000e-01

Outputting figure to mutsig2_images.part000000000110/MYH9.8_6043_10000_0.2055_0.6407_0.3293.png
                gene_name: MYH9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
MYO15A
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
Cons ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
KS ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
MYO15A   10000 perm   3 sec   (3579 perm/sec)   p_kst 4.005000e-01   p_cons 7.048000e-01   p_joint 5.466000e-01

Outputting figure to mutsig2_images.part000000000110/MYO15A.8_10849_10000_0.4005_0.7048_0.5466.png
                gene_name: MYO15A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 37 percent done.
MX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
Cons ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
KS ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
MX2   10000 perm   2 sec   (4934 perm/sec)   p_kst 3.194000e-01   p_cons 7.296000e-01   p_joint 4.034000e-01

Outputting figure to mutsig2_images.part000000000110/MX2.7_2200_10000_0.3194_0.7296_0.4034.png
                gene_name: MX2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 39 percent done.
MYBBP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
Cons ci ratio: 3.372486e-02	ci left: 5.648393e-01	ci right 5.843172e-01	k: 5746	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
MYBBP1A   10000 perm   2 sec   (4697 perm/sec)   p_kst 1.335000e-01   p_cons 5.746000e-01   p_joint 3.627000e-01

Outputting figure to mutsig2_images.part000000000110/MYBBP1A.7_4131_10000_0.1335_0.5746_0.3627.png
                gene_name: MYBBP1A
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 40 percent done.
MYL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
Cons ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
KS ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
MYL10   10000 perm   2 sec   (5788 perm/sec)   p_kst 2.740000e-01   p_cons 9.080000e-02   p_joint 1.492000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
KS ci ratio: 4.518166e-02	ci left: 2.672313e-01	ci right 2.796347e-01	k: 5468	n:20000
MYL10   20000 perm   4 sec   (5147 perm/sec)   p_kst 2.734000e-01   p_cons 9.695000e-02   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000110/MYL10.7_713_20000_0.2734_0.09695_0.19825.png
                gene_name: MYL10
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 42 percent done.
MUT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
MUT   10000 perm   2 sec   (5226 perm/sec)   p_kst 2.323000e-01   p_cons 8.860000e-02   p_joint 1.074000e-01

Joint ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
Cons ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
KS ci ratio: 5.165036e-02	ci left: 2.177915e-01	ci right 2.293890e-01	k: 4471	n:20000
MUT   20000 perm   4 sec   (4741 perm/sec)   p_kst 2.235500e-01   p_cons 8.860000e-02   p_joint 6.675000e-02

Joint ci ratio: 6.905224e-02	ci left: 9.364064e-02	ci right 1.003710e-01	k: 2909	n:30000
Cons ci ratio: 7.493055e-02	ci left: 8.045892e-02	ci right 8.675533e-02	k: 2507	n:30000
KS ci ratio: 4.229025e-02	ci left: 2.179031e-01	ci right 2.273507e-01	k: 6678	n:30000
MUT   30000 perm   7 sec   (4550 perm/sec)   p_kst 2.226000e-01   p_cons 8.356667e-02   p_joint 9.696667e-02

Outputting figure to mutsig2_images.part000000000110/MUT.6_2301_30000_0.2226_0.083567_0.096967.png
                gene_name: MUT
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 43 percent done.
MYBPC1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
Cons ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
KS ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
MYBPC1   10000 perm   2 sec   (5575 perm/sec)   p_kst 4.374000e-01   p_cons 7.690000e-02   p_joint 1.734000e-01

Joint ci ratio: 5.752079e-02	ci left: 1.830013e-01	ci right 1.938895e-01	k: 3768	n:20000
Cons ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
KS ci ratio: 3.098103e-02	ci left: 4.376467e-01	ci right 4.514694e-01	k: 8891	n:20000
MYBPC1   20000 perm   4 sec   (5009 perm/sec)   p_kst 4.445500e-01   p_cons 7.675000e-02   p_joint 1.884000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPC1.5_3698_20000_0.44455_0.07675_0.1884.png
                gene_name: MYBPC1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 45 percent done.
MYF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
KS ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
MYF6   10000 perm   2 sec   (6477 perm/sec)   p_kst 8.640000e-01   p_cons 7.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYF6.6_741_10000_0.864_0.7487_1.png
                gene_name: MYF6
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
MYH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
MYH10   10000 perm   2 sec   (4122 perm/sec)   p_kst 3.061000e-01   p_cons 2.946000e-01   p_joint 3.937000e-01

Outputting figure to mutsig2_images.part000000000110/MYH10.6_6091_10000_0.3061_0.2946_0.3937.png
                gene_name: MYH10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 48 percent done.
MYH7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
MYH7B   10000 perm   2 sec   (4326 perm/sec)   p_kst 5.570000e-02   p_cons 2.671000e-01   p_joint 1.383000e-01

Joint ci ratio: 1.235762e-01	ci left: 4.493272e-02	ci right 5.089960e-02	k: 957	n:20000
Cons ci ratio: 4.774858e-02	ci left: 2.459943e-01	ci right 2.580778e-01	k: 5040	n:20000
KS ci ratio: 1.136418e-01	ci left: 5.295054e-02	ci right 5.937926e-02	k: 1122	n:20000
MYH7B   20000 perm   5 sec   (3955 perm/sec)   p_kst 5.610000e-02   p_cons 2.520000e-01   p_joint 4.785000e-02

Joint ci ratio: 6.854473e-02	ci left: 9.492057e-02	ci right 1.016908e-01	k: 2948	n:30000
Cons ci ratio: 3.740663e-02	ci left: 2.629277e-01	ci right 2.729839e-01	k: 8038	n:30000
KS ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
MYH7B   30000 perm   8 sec   (3803 perm/sec)   p_kst 5.593333e-02   p_cons 2.679333e-01   p_joint 9.826667e-02

Outputting figure to mutsig2_images.part000000000110/MYH7B.6_6124_30000_0.055933_0.26793_0.098267.png
                gene_name: MYH7B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 49 percent done.
MYLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
MYLIP   10000 perm   2 sec   (6096 perm/sec)   p_kst 2.490000e-01   p_cons 9.420000e-02   p_joint 1.523000e-01

Joint ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
Cons ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
KS ci ratio: 4.801600e-02	ci left: 2.439114e-01	ci right 2.559614e-01	k: 4998	n:20000
MYLIP   20000 perm   4 sec   (5455 perm/sec)   p_kst 2.499000e-01   p_cons 9.555000e-02   p_joint 1.305000e-01

Outputting figure to mutsig2_images.part000000000110/MYLIP.6_1366_20000_0.2499_0.09555_0.1305.png
                gene_name: MYLIP
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 51 percent done.
MYLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
MYLK3   10000 perm   2 sec   (5402 perm/sec)   p_kst 3.379000e-01   p_cons 3.652000e-01   p_joint 3.994000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK3.6_2512_10000_0.3379_0.3652_0.3994.png
                gene_name: MYLK3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
MUTYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
Cons ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
KS ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
MUTYH   10000 perm   2 sec   (5645 perm/sec)   p_kst 5.638000e-01   p_cons 1.433000e-01   p_joint 3.659000e-01

Outputting figure to mutsig2_images.part000000000110/MUTYH.5_1714_10000_0.5638_0.1433_0.3659.png
                gene_name: MUTYH
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 54 percent done.
MYBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
KS ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
MYBL1   10000 perm   2 sec   (5767 perm/sec)   p_kst 6.650000e-01   p_cons 4.022000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000110/MYBL1.5_2323_10000_0.665_0.4022_0.7394.png
                gene_name: MYBL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 55 percent done.
MYBPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
Cons ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KS ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
MYBPC3   10000 perm   2 sec   (5191 perm/sec)   p_kst 2.591000e-01   p_cons 9.620000e-02   p_joint 1.054000e-01

Joint ci ratio: 6.695676e-02	ci left: 1.413795e-01	ci right 1.512236e-01	k: 2925	n:20000
Cons ci ratio: 8.592627e-02	ci left: 9.018588e-02	ci right 9.833252e-02	k: 1884	n:20000
KS ci ratio: 4.732184e-02	ci left: 2.493672e-01	ci right 2.615040e-01	k: 5108	n:20000
MYBPC3   20000 perm   4 sec   (4688 perm/sec)   p_kst 2.554000e-01   p_cons 9.420000e-02   p_joint 1.462500e-01

Outputting figure to mutsig2_images.part000000000110/MYBPC3.5_3954_20000_0.2554_0.0942_0.14625.png
                gene_name: MYBPC3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
MYBPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
Cons ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
KS ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
MYBPH   10000 perm   2 sec   (6573 perm/sec)   p_kst 1.244000e-01   p_cons 3.432000e-01   p_joint 1.688000e-01

Joint ci ratio: 6.471824e-02	ci left: 1.499604e-01	ci right 1.600401e-01	k: 3099	n:20000
Cons ci ratio: 3.753461e-02	ci left: 3.462242e-01	ci right 3.595186e-01	k: 7057	n:20000
KS ci ratio: 7.257410e-02	ci left: 1.226609e-01	ci right 1.319478e-01	k: 2545	n:20000
MYBPH   20000 perm   3 sec   (5853 perm/sec)   p_kst 1.272500e-01   p_cons 3.528500e-01   p_joint 1.549500e-01

Outputting figure to mutsig2_images.part000000000110/MYBPH.5_1474_20000_0.12725_0.35285_0.15495.png
                gene_name: MYBPH
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 58 percent done.
MYBPHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
Cons ci ratio: 4.381445e-02	ci left: 4.347281e-01	ci right 4.543042e-01	k: 4445	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
MYBPHL   10000 perm   2 sec   (5971 perm/sec)   p_kst 3.728000e-01   p_cons 4.445000e-01   p_joint 5.043000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPHL.5_1097_10000_0.3728_0.4445_0.5043.png
                gene_name: MYBPHL
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 60 percent done.
MYEOV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
Cons ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
MYEOV   10000 perm   2 sec   (6030 perm/sec)   p_kst 2.430000e-02   p_cons 9.332000e-01   p_joint 8.200000e-02

Joint ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
Cons ci ratio: 7.462553e-03	ci left: 9.288835e-01	ci right 9.358902e-01	k: 18649	n:20000
KS ci ratio: 1.773270e-01	ci left: 2.173197e-02	ci right 2.600799e-02	k: 476	n:20000
MYEOV   20000 perm   4 sec   (5395 perm/sec)   p_kst 2.380000e-02   p_cons 9.324500e-01   p_joint 5.035000e-02

Joint ci ratio: 8.869151e-02	ci left: 5.841563e-02	ci right 6.386974e-02	k: 1833	n:30000
Cons ci ratio: 6.054651e-03	ci left: 9.303498e-01	ci right 9.360326e-01	k: 27997	n:30000
KS ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
MYEOV   30000 perm   6 sec   (5158 perm/sec)   p_kst 2.240000e-02   p_cons 9.332333e-01   p_joint 6.110000e-02

Joint ci ratio: 8.437302e-02	ci left: 4.903571e-02	ci right 5.337974e-02	k: 2047	n:40000
Cons ci ratio: 5.225697e-03	ci left: 9.311668e-01	ci right 9.360701e-01	k: 37346	n:40000
KS ci ratio: 1.288940e-01	ci left: 2.114153e-02	ci right 2.407834e-02	k: 903	n:40000
MYEOV   40000 perm   8 sec   (4982 perm/sec)   p_kst 2.257500e-02   p_cons 9.336500e-01   p_joint 5.117500e-02

Joint ci ratio: 8.106156e-02	ci left: 4.286597e-02	ci right 4.650713e-02	k: 2233	n:50000
Cons ci ratio: 4.678024e-03	ci left: 9.313214e-01	ci right 9.357081e-01	k: 46677	n:50000
KS ci ratio: 1.171019e-01	ci left: 2.063496e-02	ci right 2.322096e-02	k: 1095	n:50000
MYEOV   50000 perm   10 sec   (4859 perm/sec)   p_kst 2.190000e-02   p_cons 9.335400e-01   p_joint 4.466000e-02

Joint ci ratio: 6.604941e-02	ci left: 5.361560e-02	ci right 5.729422e-02	k: 3326	n:60000
Cons ci ratio: 4.272303e-03	ci left: 9.314601e-01	ci right 9.354645e-01	k: 56009	n:60000
KS ci ratio: 1.074517e-01	ci left: 2.053278e-02	ci right 2.288047e-02	k: 1301	n:60000
MYEOV   60000 perm   13 sec   (4752 perm/sec)   p_kst 2.168333e-02   p_cons 9.334833e-01   p_joint 5.543333e-02

Joint ci ratio: 6.883982e-02	ci left: 4.274535e-02	ci right 4.580685e-02	k: 3098	n:70000
Cons ci ratio: 3.735521e-03	ci left: 9.384614e-01	ci right 9.419877e-01	k: 65817	n:70000
KS ci ratio: 9.928078e-02	ci left: 2.070305e-02	ci right 2.287970e-02	k: 1524	n:70000
MYEOV   70000 perm   15 sec   (4657 perm/sec)   p_kst 2.177143e-02   p_cons 9.402429e-01   p_joint 4.425714e-02

Outputting figure to mutsig2_images.part000000000110/MYEOV.5_950_70000_0.021771_0.94024_0.044257.png
                gene_name: MYEOV
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 61 percent done.
MUC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
Cons ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
MUC21   10000 perm   2 sec   (5755 perm/sec)   p_kst 2.610000e-02   p_cons 1.433000e-01   p_joint 4.640000e-02

Joint ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
Cons ci ratio: 7.041895e-02	ci left: 1.294058e-01	ci right 1.389008e-01	k: 2682	n:20000
KS ci ratio: 1.633108e-01	ci left: 2.570945e-02	ci right 3.032914e-02	k: 559	n:20000
MUC21   20000 perm   4 sec   (5188 perm/sec)   p_kst 2.795000e-02   p_cons 1.341000e-01   p_joint 3.760000e-02

Joint ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
Cons ci ratio: 5.749304e-02	ci left: 1.302958e-01	ci right 1.380418e-01	k: 4024	n:30000
KS ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
MUC21   30000 perm   6 sec   (4933 perm/sec)   p_kst 2.760000e-02   p_cons 1.341333e-01   p_joint 3.006667e-02

Joint ci ratio: 1.203188e-01	ci left: 2.429262e-02	ci right 2.742673e-02	k: 1033	n:40000
Cons ci ratio: 4.991238e-02	ci left: 1.302553e-01	ci right 1.369480e-01	k: 5343	n:40000
KS ci ratio: 1.153207e-01	ci left: 2.645373e-02	ci right 2.971527e-02	k: 1122	n:40000
MUC21   40000 perm   8 sec   (4759 perm/sec)   p_kst 2.805000e-02   p_cons 1.335750e-01   p_joint 2.582500e-02

Joint ci ratio: 1.204596e-01	ci left: 1.948932e-02	ci right 2.200675e-02	k: 1036	n:50000
Cons ci ratio: 4.457378e-02	ci left: 1.309660e-01	ci right 1.369566e-01	k: 6697	n:50000
KS ci ratio: 1.037466e-01	ci left: 2.631798e-02	ci right 2.921719e-02	k: 1387	n:50000
MUC21   50000 perm   11 sec   (4633 perm/sec)   p_kst 2.774000e-02   p_cons 1.339400e-01   p_joint 2.072000e-02

Joint ci ratio: 8.629156e-02	ci left: 3.181338e-02	ci right 3.469867e-02	k: 1994	n:60000
Cons ci ratio: 4.058120e-02	ci left: 1.318455e-01	ci right 1.373233e-01	k: 8074	n:60000
KS ci ratio: 9.084212e-02	ci left: 2.873097e-02	ci right 3.148139e-02	k: 1805	n:60000
MUC21   60000 perm   13 sec   (4536 perm/sec)   p_kst 3.008333e-02   p_cons 1.345667e-01   p_joint 3.323333e-02

Outputting figure to mutsig2_images.part000000000110/MUC21.4_1713_60000_0.030083_0.13457_0.033233.png
                gene_name: MUC21
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 63 percent done.
MUDENG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
KS ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
MUDENG   10000 perm   2 sec   (5844 perm/sec)   p_kst 9.224000e-01   p_cons 8.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUDENG.4_1505_10000_0.9224_0.8018_1.png
                gene_name: MUDENG
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
MUM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
Cons ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
KS ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
MUM1L1   10000 perm   2 sec   (5813 perm/sec)   p_kst 1.930000e-02   p_cons 7.163000e-01   p_joint 7.770000e-02

Joint ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
Cons ci ratio: 1.686357e-02	ci left: 7.236380e-01	ci right 7.359952e-01	k: 14597	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
MUM1L1   20000 perm   4 sec   (5235 perm/sec)   p_kst 1.920000e-02   p_cons 7.298500e-01   p_joint 8.210000e-02

Joint ci ratio: 9.271595e-02	ci left: 5.362028e-02	ci right 5.886607e-02	k: 1686	n:30000
Cons ci ratio: 1.382790e-02	ci left: 7.230936e-01	ci right 7.331955e-01	k: 21845	n:30000
KS ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
MUM1L1   30000 perm   6 sec   (4984 perm/sec)   p_kst 2.036667e-02   p_cons 7.281667e-01   p_joint 5.620000e-02

Joint ci ratio: 9.074104e-02	ci left: 4.254879e-02	ci right 4.661766e-02	k: 1782	n:40000
Cons ci ratio: 1.198871e-02	ci left: 7.233339e-01	ci right 7.320830e-01	k: 29109	n:40000
KS ci ratio: 1.374616e-01	ci left: 1.855383e-02	ci right 2.131649e-02	k: 796	n:40000
MUM1L1   40000 perm   8 sec   (4810 perm/sec)   p_kst 1.990000e-02   p_cons 7.277250e-01   p_joint 4.455000e-02

Joint ci ratio: 7.021354e-02	ci left: 5.661595e-02	ci right 6.075547e-02	k: 2933	n:50000
Cons ci ratio: 1.067936e-02	ci left: 7.254224e-01	ci right 7.332310e-01	k: 36467	n:50000
KS ci ratio: 1.231548e-01	ci left: 1.863562e-02	ci right 2.110057e-02	k: 992	n:50000
MUM1L1   50000 perm   11 sec   (4704 perm/sec)   p_kst 1.984000e-02   p_cons 7.293400e-01   p_joint 5.866000e-02

Joint ci ratio: 5.155603e-02	ci left: 8.561307e-02	ci right 9.016022e-02	k: 5272	n:60000
Cons ci ratio: 1.010196e-02	ci left: 7.114362e-01	ci right 7.186763e-01	k: 42904	n:60000
KS ci ratio: 1.115491e-01	ci left: 1.904060e-02	ci right 2.130615e-02	k: 1209	n:60000
MUM1L1   60000 perm   13 sec   (4607 perm/sec)   p_kst 2.015000e-02   p_cons 7.150667e-01   p_joint 8.786667e-02

Joint ci ratio: 5.266968e-02	ci left: 7.139396e-02	ci right 7.527007e-02	k: 5132	n:70000
Cons ci ratio: 9.313820e-03	ci left: 7.134032e-01	ci right 7.200931e-01	k: 50173	n:70000
KS ci ratio: 1.037127e-01	ci left: 1.896175e-02	ci right 2.104973e-02	k: 1399	n:70000
MUM1L1   70000 perm   15 sec   (4523 perm/sec)   p_kst 1.998571e-02   p_cons 7.167571e-01   p_joint 7.331429e-02

Joint ci ratio: 5.062815e-02	ci left: 6.794484e-02	ci right 7.148644e-02	k: 5576	n:80000
Cons ci ratio: 8.706004e-03	ci left: 7.139146e-01	ci right 7.201696e-01	k: 57364	n:80000
KS ci ratio: 9.716951e-02	ci left: 1.896784e-02	ci right 2.091719e-02	k: 1594	n:80000
MUM1L1   80000 perm   18 sec   (4432 perm/sec)   p_kst 1.992500e-02   p_cons 7.170500e-01   p_joint 6.970000e-02

Outputting figure to mutsig2_images.part000000000110/MUM1L1.4_2095_80000_0.019925_0.71705_0.0697.png
                gene_name: MUM1L1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.071 

Current progress: 66 percent done.
MURC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
Cons ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
KS ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
MURC   10000 perm   2 sec   (6017 perm/sec)   p_kst 1.034000e-01   p_cons 1.516000e-01   p_joint 1.153000e-01

Joint ci ratio: 8.638237e-02	ci left: 8.930339e-02	ci right 9.741528e-02	k: 1866	n:20000
Cons ci ratio: 6.538094e-02	ci left: 1.473461e-01	ci right 1.573552e-01	k: 3046	n:20000
KS ci ratio: 8.251386e-02	ci left: 9.720062e-02	ci right 1.056157e-01	k: 2027	n:20000
MURC   20000 perm   4 sec   (5436 perm/sec)   p_kst 1.013500e-01   p_cons 1.523000e-01   p_joint 9.330000e-02

Outputting figure to mutsig2_images.part000000000110/MURC.4_1103_20000_0.10135_0.1523_0.0933.png
                gene_name: MURC
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 67 percent done.
MYEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
Cons ci ratio: 4.172062e-02	ci left: 4.589796e-01	ci right 4.786386e-01	k: 4688	n:10000
KS ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
MYEF2   10000 perm   2 sec   (5967 perm/sec)   p_kst 1.891000e-01   p_cons 4.688000e-01   p_joint 3.039000e-01

Outputting figure to mutsig2_images.part000000000110/MYEF2.4_1871_10000_0.1891_0.4688_0.3039.png
                gene_name: MYEF2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 69 percent done.
MVP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
Cons ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
KS ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
MVP   10000 perm   2 sec   (5789 perm/sec)   p_kst 5.232000e-01   p_cons 2.695000e-01   p_joint 4.542000e-01

Outputting figure to mutsig2_images.part000000000110/MVP.3_2738_10000_0.5232_0.2695_0.4542.png
                gene_name: MVP
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 70 percent done.
MYBPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
Cons ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
MYBPC2   10000 perm   2 sec   (5428 perm/sec)   p_kst 4.280000e-02   p_cons 5.471000e-01   p_joint 1.683000e-01

Joint ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
Cons ci ratio: 2.499743e-02	ci left: 5.445252e-01	ci right 5.583598e-01	k: 11029	n:20000
KS ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
MYBPC2   20000 perm   4 sec   (4844 perm/sec)   p_kst 4.255000e-02   p_cons 5.514500e-01   p_joint 9.225000e-02

Joint ci ratio: 6.033888e-02	ci left: 1.195995e-01	ci right 1.270736e-01	k: 3699	n:30000
Cons ci ratio: 2.050375e-02	ci left: 5.435483e-01	ci right 5.548421e-01	k: 16476	n:30000
KS ci ratio: 1.083574e-01	ci left: 3.953067e-02	ci right 4.409193e-02	k: 1253	n:30000
MYBPC2   30000 perm   6 sec   (4617 perm/sec)   p_kst 4.176667e-02   p_cons 5.492000e-01   p_joint 1.233000e-01

Joint ci ratio: 7.077673e-02	ci left: 6.869858e-02	ci right 7.376387e-02	k: 2848	n:40000
Cons ci ratio: 1.772919e-02	ci left: 5.450836e-01	ci right 5.548591e-01	k: 21999	n:40000
KS ci ratio: 9.485163e-02	ci left: 3.900438e-02	ci right 4.291261e-02	k: 1637	n:40000
MYBPC2   40000 perm   9 sec   (4468 perm/sec)   p_kst 4.092500e-02   p_cons 5.499750e-01   p_joint 7.120000e-02

Outputting figure to mutsig2_images.part000000000110/MYBPC2.3_3538_40000_0.040925_0.54997_0.0712.png
                gene_name: MYBPC2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 72 percent done.
MYCBPAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
KS ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
MYCBPAP   10000 perm   2 sec   (5306 perm/sec)   p_kst 6.558000e-01   p_cons 4.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYCBPAP.3_3031_10000_0.6558_0.4047_1.png
                gene_name: MYCBPAP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
MYCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
Cons ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
KS ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
MYCL1   10000 perm   2 sec   (6293 perm/sec)   p_kst 1.754000e-01   p_cons 5.176000e-01   p_joint 3.651000e-01

Outputting figure to mutsig2_images.part000000000110/MYCL1.3_1322_10000_0.1754_0.5176_0.3651.png
                gene_name: MYCL1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
MYD88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
MYD88   10000 perm   2 sec   (6426 perm/sec)   p_kst 7.806000e-01   p_cons 8.205000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYD88.3_974_10000_0.7806_0.8205_1.png
                gene_name: MYD88
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
MYF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
MYF5   10000 perm   2 sec   (6352 perm/sec)   p_kst 8.933000e-01   p_cons 5.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYF5.3_780_10000_0.8933_0.544_1.png
                gene_name: MYF5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
Cons ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
KS ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
MYL1   10000 perm   2 sec   (6375 perm/sec)   p_kst 4.796000e-01   p_cons 7.290000e-01   p_joint 6.443000e-01

Outputting figure to mutsig2_images.part000000000110/MYL1.3_645_10000_0.4796_0.729_0.6443.png
                gene_name: MYL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 79 percent done.
MYL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
MYL7   10000 perm   1 sec   (6751 perm/sec)   p_kst 8.455000e-01   p_cons 1.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYL7.3_556_10000_0.8455_0.1585_1.png
                gene_name: MYL7
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
MYLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KS ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
MYLK2   10000 perm   2 sec   (6068 perm/sec)   p_kst 7.174000e-01   p_cons 6.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYLK2.3_1839_10000_0.7174_0.6432_1.png
                gene_name: MYLK2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
MYLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
KS ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
MYLK4   10000 perm   2 sec   (6378 perm/sec)   p_kst 4.398000e-01   p_cons 7.706000e-01   p_joint 4.629000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK4.3_1211_10000_0.4398_0.7706_0.4629.png
                gene_name: MYLK4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 84 percent done.
MUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
KS ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
MUL1   10000 perm   2 sec   (6662 perm/sec)   p_kst 7.110000e-02   p_cons 3.493000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.804969e-02	ci left: 3.400521e-01	ci right 3.532925e-01	k: 6933	n:20000
KS ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
MUL1   20000 perm   3 sec   (5872 perm/sec)   p_kst 7.120000e-02   p_cons 3.466500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 3.093984e-02	ci left: 3.431395e-01	ci right 3.539565e-01	k: 10456	n:30000
KS ci ratio: 8.137254e-02	ci left: 6.887093e-02	ci right 7.474565e-02	k: 2153	n:30000
MUL1   30000 perm   5 sec   (5594 perm/sec)   p_kst 7.176667e-02   p_cons 3.485333e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUL1.2_1075_30000_0.071767_0.34853_1.png
                gene_name: MUL1
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
MUS81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
Cons ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
KS ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
MUS81   10000 perm   2 sec   (6189 perm/sec)   p_kst 1.983000e-01   p_cons 9.680000e-01   p_joint 5.147000e-01

Outputting figure to mutsig2_images.part000000000110/MUS81.2_1720_10000_0.1983_0.968_0.5147.png
                gene_name: MUS81
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 87 percent done.
MVD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
Cons ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
KS ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
MVD   10000 perm   2 sec   (6545 perm/sec)   p_kst 4.057000e-01   p_cons 8.239000e-01   p_joint 9.279000e-01

Outputting figure to mutsig2_images.part000000000110/MVD.2_1243_10000_0.4057_0.8239_0.9279.png
                gene_name: MVD
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
MX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
Cons ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
KS ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
MX1   10000 perm   2 sec   (6292 perm/sec)   p_kst 6.314000e-01   p_cons 3.062000e-01   p_joint 6.127000e-01

Outputting figure to mutsig2_images.part000000000110/MX1.2_2041_10000_0.6314_0.3062_0.6127.png
                gene_name: MX1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 90 percent done.
MYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
Cons ci ratio: 2.149762e-03	ci left: 9.958378e-01	ci right 9.980570e-01	k: 9971	n:10000
KS ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
MYB   10000 perm   2 sec   (5901 perm/sec)   p_kst 2.021000e-01   p_cons 9.971000e-01   p_joint 8.331000e-01

Outputting figure to mutsig2_images.part000000000110/MYB.2_2350_10000_0.2021_0.9971_0.8331.png
                gene_name: MYB
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 91 percent done.
MYCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
Cons ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
KS ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
MYCN   10000 perm   2 sec   (6305 perm/sec)   p_kst 8.480000e-02   p_cons 8.954000e-01   p_joint 1.376000e-01

Joint ci ratio: 4.963812e-02	ci left: 2.317645e-01	ci right 2.436119e-01	k: 4753	n:20000
Cons ci ratio: 9.525663e-03	ci left: 8.900583e-01	ci right 8.986267e-01	k: 17888	n:20000
KS ci ratio: 9.033333e-02	ci left: 8.214981e-02	ci right 8.997103e-02	k: 1720	n:20000
MYCN   20000 perm   4 sec   (5657 perm/sec)   p_kst 8.600000e-02   p_cons 8.944000e-01   p_joint 2.376500e-01

Outputting figure to mutsig2_images.part000000000110/MYCN.2_1403_20000_0.086_0.8944_0.23765.png
                gene_name: MYCN
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 93 percent done.
MYCT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
MYCT1   10000 perm   1 sec   (6776 perm/sec)   p_kst 7.866000e-01   p_cons 5.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYCT1.2_716_10000_0.7866_0.5407_1.png
                gene_name: MYCT1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MYEOV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
Cons ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
KS ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
MYEOV2   10000 perm   1 sec   (6840 perm/sec)   p_kst 1.383000e-01   p_cons 1.370000e-02   p_joint 2.940000e-02

Joint ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
Cons ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
KS ci ratio: 6.920250e-02	ci left: 1.334449e-01	ci right 1.430605e-01	k: 2764	n:20000
MYEOV2   20000 perm   3 sec   (6024 perm/sec)   p_kst 1.382000e-01   p_cons 1.370000e-02   p_joint 1.035000e-02

Joint ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
Cons ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
KS ci ratio: 5.670637e-02	ci left: 1.334899e-01	ci right 1.413138e-01	k: 4121	n:30000
MYEOV2   30000 perm   5 sec   (5735 perm/sec)   p_kst 1.373667e-01   p_cons 1.343333e-02   p_joint 1.306667e-02

Joint ci ratio: 2.059566e-01	ci left: 8.050337e-03	ci right 9.921990e-03	k: 358	n:40000
Cons ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
KS ci ratio: 4.906274e-02	ci left: 1.342381e-01	ci right 1.410146e-01	k: 5504	n:40000
MYEOV2   40000 perm   7 sec   (5532 perm/sec)   p_kst 1.376000e-01   p_cons 1.410000e-02   p_joint 8.950000e-03

Joint ci ratio: 1.959546e-01	ci left: 7.161715e-03	ci right 8.736219e-03	k: 396	n:50000
Cons ci ratio: 1.481971e-01	ci left: 1.277648e-02	ci right 1.484053e-02	k: 689	n:50000
KS ci ratio: 4.367451e-02	ci left: 1.357211e-01	ci right 1.418009e-01	k: 6937	n:50000
MYEOV2   50000 perm   9 sec   (5376 perm/sec)   p_kst 1.387400e-01   p_cons 1.378000e-02   p_joint 7.920000e-03

Joint ci ratio: 1.682424e-01	ci left: 8.211909e-03	ci right 9.736156e-03	k: 537	n:60000
Cons ci ratio: 1.349549e-01	ci left: 1.293011e-02	ci right 1.481734e-02	k: 831	n:60000
KS ci ratio: 3.977665e-02	ci left: 1.365386e-01	ci right 1.420964e-01	k: 8358	n:60000
MYEOV2   60000 perm   11 sec   (5240 perm/sec)   p_kst 1.393000e-01   p_cons 1.385000e-02   p_joint 8.950000e-03

Joint ci ratio: 1.544843e-01	ci left: 8.409812e-03	ci right 9.831326e-03	k: 637	n:70000
Cons ci ratio: 1.247921e-01	ci left: 1.303191e-02	ci right 1.478015e-02	k: 972	n:70000
KS ci ratio: 3.684397e-02	ci left: 1.366294e-01	ci right 1.417720e-01	k: 9743	n:70000
MYEOV2   70000 perm   14 sec   (5116 perm/sec)   p_kst 1.391857e-01   p_cons 1.388571e-02   p_joint 9.100000e-03

Joint ci ratio: 1.453282e-01	ci left: 8.357177e-03	ci right 9.678798e-03	k: 720	n:80000
Cons ci ratio: 1.175390e-01	ci left: 1.290592e-02	ci right 1.452963e-02	k: 1096	n:80000
KS ci ratio: 3.441774e-02	ci left: 1.371184e-01	ci right 1.419328e-01	k: 11161	n:80000
MYEOV2   80000 perm   16 sec   (5005 perm/sec)   p_kst 1.395125e-01   p_cons 1.370000e-02   p_joint 9.000000e-03

Joint ci ratio: 1.386761e-01	ci left: 8.189421e-03	ci right 9.420330e-03	k: 791	n:90000
Cons ci ratio: 1.122137e-01	ci left: 1.262656e-02	ci right 1.413838e-02	k: 1203	n:90000
KS ci ratio: 3.249638e-02	ci left: 1.369115e-01	ci right 1.414451e-01	k: 12525	n:90000
MYEOV2   90000 perm   18 sec   (4908 perm/sec)   p_kst 1.391667e-01   p_cons 1.336667e-02   p_joint 8.788889e-03

Joint ci ratio: 1.309606e-01	ci left: 8.298147e-03	ci right 9.470605e-03	k: 887	n:100000
Cons ci ratio: 1.059260e-01	ci left: 1.279388e-02	ci right 1.423454e-02	k: 1350	n:100000
KS ci ratio: 3.086844e-02	ci left: 1.367222e-01	ci right 1.410187e-01	k: 13886	n:100000
MYEOV2   100000 perm   21 sec   (4819 perm/sec)   p_kst 1.388600e-01   p_cons 1.350000e-02   p_joint 8.870000e-03

Joint ci ratio: 1.252418e-01	ci left: 8.274135e-03	ci right 9.388357e-03	k: 970	n:110000
Cons ci ratio: 1.010344e-01	ci left: 1.281747e-02	ci right 1.419018e-02	k: 1484	n:110000
KS ci ratio: 2.935686e-02	ci left: 1.374304e-01	ci right 1.415341e-01	k: 15342	n:110000
MYEOV2   110000 perm   23 sec   (4729 perm/sec)   p_kst 1.394727e-01   p_cons 1.349091e-02   p_joint 8.818182e-03

Joint ci ratio: 1.053006e-01	ci left: 1.081513e-02	ci right 1.202532e-02	k: 1369	n:120000
Cons ci ratio: 9.670290e-02	ci left: 1.285467e-02	ci right 1.416900e-02	k: 1620	n:120000
KS ci ratio: 2.806403e-02	ci left: 1.378839e-01	ci right 1.418168e-01	k: 16781	n:120000
MYEOV2   120000 perm   26 sec   (4646 perm/sec)   p_kst 1.398417e-01   p_cons 1.350000e-02   p_joint 1.140833e-02

Joint ci ratio: 1.012098e-01	ci left: 1.082999e-02	ci right 1.199196e-02	k: 1482	n:130000
Cons ci ratio: 9.326198e-02	ci left: 1.278200e-02	ci right 1.403985e-02	k: 1742	n:130000
KS ci ratio: 2.692218e-02	ci left: 1.383245e-01	ci right 1.421069e-01	k: 18227	n:130000
MYEOV2   130000 perm   28 sec   (4562 perm/sec)   p_kst 1.402077e-01   p_cons 1.340000e-02   p_joint 1.140000e-02

Joint ci ratio: 9.774751e-02	ci left: 1.080168e-02	ci right 1.191869e-02	k: 1589	n:140000
Cons ci ratio: 9.006612e-02	ci left: 1.274836e-02	ci right 1.395764e-02	k: 1868	n:140000
KS ci ratio: 2.597609e-02	ci left: 1.380868e-01	ci right 1.417281e-01	k: 19586	n:140000
MYEOV2   140000 perm   31 sec   (4486 perm/sec)   p_kst 1.399000e-01   p_cons 1.334286e-02   p_joint 1.135000e-02

Outputting figure to mutsig2_images.part000000000110/MYEOV2.2_783_140000_0.1399_0.013343_0.01135.png
                gene_name: MYEOV2
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 96 percent done.
MYH14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 7.595156e-03	ci left: 9.600562e-01	ci right 9.674704e-01	k: 9639	n:10000
KS ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
MYH14   10000 perm   2 sec   (4643 perm/sec)   p_kst 6.323000e-01   p_cons 9.639000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000110/MYH14.2_6279_10000_0.6323_0.9639_0.8406.png
                gene_name: MYH14
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 97 percent done.
MYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
Cons ci ratio: 3.409181e-02	ci left: 5.595257e-01	ci right 5.790339e-01	k: 5693	n:10000
KS ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
MYL2   10000 perm   1 sec   (6823 perm/sec)   p_kst 5.259000e-01   p_cons 5.693000e-01   p_joint 5.326000e-01

Outputting figure to mutsig2_images.part000000000110/MYL2.2_529_10000_0.5259_0.5693_0.5326.png
                gene_name: MYL2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 99 percent done.
MYL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
KS ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
MYL3   10000 perm   1 sec   (6891 perm/sec)   p_kst 1.046000e-01   p_cons 2.657000e-01   p_joint 2.039000e-01

Joint ci ratio: 4.802881e-02	ci left: 2.438122e-01	ci right 2.558606e-01	k: 4996	n:20000
Cons ci ratio: 4.681108e-02	ci left: 2.534847e-01	ci right 2.656853e-01	k: 5191	n:20000
KS ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
MYL3   20000 perm   3 sec   (6044 perm/sec)   p_kst 1.050500e-01   p_cons 2.595500e-01   p_joint 2.498000e-01

Outputting figure to mutsig2_images.part000000000110/MYL3.2_612_20000_0.10505_0.25955_0.2498.png
                gene_name: MYL3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000110
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 110 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 4422210: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000111> was used as the working directory.
Started at Wed Oct 24 18:00:37 2012
Results reported at Wed Oct 24 19:01:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000111.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000111.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 111  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000111.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4024.40 sec.
    Max Memory :      5373 MB
    Max Swap   :      7792 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
111
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 111
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 111: processing genes 9953 - 10042
Calculating significance of each gene.
Using projection method.
9953	MYO18B	1
9954	MYO19	1
9955	MYO1A	6.271131e-01
9956	MYO1B	8.044342e-01
9957	MYO1C	9.726524e-01
9958	MYO1D	7.093573e-01
9959	MYO1E	9.888471e-01
9960	MYO1F	1
9961	MYO1G	8.087793e-01
9962	MYO1H	3.533997e-01
9963	MYO3A	9.996617e-01
9964	MYO3B	9.853858e-01
9965	MYO5A	9.986778e-01
9966	MYO5B	9.983301e-01
9967	MYO5C	9.997757e-01
9968	MYO6	9.593509e-01
9969	MYO7A	9.996618e-01
9970	MYO7B	1
9971	MYO9A	9.999966e-01
9972	MYO9B	9.712523e-01
9973	MYOC	8.948829e-01
9974	MYOCD	8.228677e-03
9975	MYOD1	1.380376e-01
9976	MYOF	9.732359e-01
9977	MYOG	1
9978	MYOM1	9.714814e-01
9979	MYOM2	9.896913e-01
9980	MYOM3	1
9981	MYOT	1.241496e-01
9982	MYOZ1	4.225287e-01
9983	MYOZ2	8.186038e-02
9984	MYOZ3	1
9985	MYPN	5.794474e-01
9986	MYPOP	1
9987	MYRIP	8.748140e-01
In gene MYSM1 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 2552    n = 1	mu =   4.02e-07
9988	MYSM1	8.642787e-01
9989	MYST1	9.524432e-01
9990	MYST2	6.238883e-01
9991	MYST3	9.973660e-01
9992	MYST4	8.742731e-01
9993	MYT1	9.275166e-01
9994	MYT1L	9.684706e-01
9995	MZF1	9.735846e-01
9996	N4BP1	4.149540e-01
9997	N4BP2	1
9998	N4BP2L1	7.624433e-01
9999	N4BP2L2	8.422452e-01
10000/18094 10000	N4BP3	7.759640e-01
10001	N6AMT1	5.499161e-02
10002	N6AMT2	7.553273e-01
10003	NAA10	5.057236e-01
10004	NAA11	1
In gene NAA15 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 2623    n = 1	mu =   3.68e-07
10005	NAA15	7.944246e-01
10006	NAA16	4.594802e-01
10007	NAA20	3.346370e-01
10008	NAA25	9.471025e-01
10009	NAA30	1
10010	NAA35	3.729770e-01
10011	NAA38	1
10012	NAA40	1
10013	NAA50	6.555884e-01
10014	NAAA	1
10015	NAALAD2	8.035616e-01
10016	NAALADL1	3.487934e-01
10017	NAALADL2	7.052999e-01
10018	NAB1	1
10019	NAB2	1
10020	NACA	9.999964e-01
10021	NACA2	7.231201e-02
10022	NACC1	8.215287e-01
10023	NACC2	1
10024	NADK	7.495970e-01
10025	NADSYN1	9.841634e-01
10026	NAE1	3.462997e-01
10027	NAF1	7.232338e-01
10028	NAGA	3.361970e-01
10029	NAGK	7.046072e-01
10030	NAGLU	9.607977e-01
10031	NAGPA	8.713551e-01
10032	NAGS	1
10033	NAIF1	1
10034	NALCN	1
10035	NAMPT	5.510134e-01
10036	NANOG	6.127206e-01
10037	NANOS2	3.296533e-01
10038	NANOS3	1
10039	NANP	1
10040	NANS	7.033123e-01
10041	NAP1L1	7.911281e-01
10042	NAP1L2	9.837139e-03
Done

Running MutSig 2:
Scatter job 111: processing genes 9953 - 10042
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NALCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471055e-02	ci left: 8.699939e-01	ci right 8.829859e-01	k: 8766	n:10000
Cons ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
NALCN   10000 perm   4 sec   (2544 perm/sec)   p_kst 7.241000e-01   p_cons 6.120000e-01   p_joint 8.766000e-01

Outputting figure to mutsig2_images.part000000000111/NALCN.39_5389_10000_0.7241_0.612_0.8766.png
                gene_name: NALCN
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 2 percent done.
MYO18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
Cons ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
MYO18B   10000 perm   4 sec   (2745 perm/sec)   p_kst 5.438000e-01   p_cons 6.223000e-01   p_joint 6.875000e-01

Outputting figure to mutsig2_images.part000000000111/MYO18B.25_7872_10000_0.5438_0.6223_0.6875.png
                gene_name: MYO18B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 3 percent done.
MYT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
KS ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
MYT1L   10000 perm   3 sec   (3985 perm/sec)   p_kst 3.197000e-01   p_cons 5.167000e-01   p_joint 4.182000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1L.19_3635_10000_0.3197_0.5167_0.4182.png
                gene_name: MYT1L
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 5 percent done.
MYO7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
Cons ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
KS ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
MYO7B   10000 perm   3 sec   (3324 perm/sec)   p_kst 6.977000e-01   p_cons 2.682000e-01   p_joint 6.025000e-01

Outputting figure to mutsig2_images.part000000000111/MYO7B.18_6535_10000_0.6977_0.2682_0.6025.png
                gene_name: MYO7B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 6 percent done.
MYO3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
Cons ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
KS ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
MYO3A   10000 perm   3 sec   (3529 perm/sec)   p_kst 2.121000e-01   p_cons 4.199000e-01   p_joint 3.992000e-01

Outputting figure to mutsig2_images.part000000000111/MYO3A.17_4983_10000_0.2121_0.4199_0.3992.png
                gene_name: MYO3A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 8 percent done.
MYOCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
Cons ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
KS ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
MYOCD   10000 perm   2 sec   (4227 perm/sec)   p_kst 6.041000e-01   p_cons 3.513000e-01   p_joint 5.210000e-01

Outputting figure to mutsig2_images.part000000000111/MYOCD.17_3029_10000_0.6041_0.3513_0.521.png
                gene_name: MYOCD
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
MYOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
KS ci ratio: 6.015053e-02	ci left: 2.890454e-01	ci right 3.070724e-01	k: 2980	n:10000
MYOM2   10000 perm   3 sec   (3591 perm/sec)   p_kst 2.980000e-01   p_cons 5.570000e-02   p_joint 4.900000e-02

Joint ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
Cons ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
KS ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
MYOM2   20000 perm   6 sec   (3290 perm/sec)   p_kst 2.955500e-01   p_cons 5.800000e-02   p_joint 1.167000e-01

Joint ci ratio: 6.720076e-02	ci left: 9.843309e-02	ci right 1.053109e-01	k: 3055	n:30000
Cons ci ratio: 9.019386e-02	ci left: 5.655559e-02	ci right 6.193016e-02	k: 1776	n:30000
KS ci ratio: 3.488642e-02	ci left: 2.910035e-01	ci right 3.013693e-01	k: 8885	n:30000
MYOM2   30000 perm   9 sec   (3178 perm/sec)   p_kst 2.961667e-01   p_cons 5.920000e-02   p_joint 1.018333e-01

Outputting figure to mutsig2_images.part000000000111/MYOM2.16_4542_30000_0.29617_0.0592_0.10183.png
                gene_name: MYOM2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 11 percent done.
MYPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
KS ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
MYPN   10000 perm   2 sec   (4312 perm/sec)   p_kst 3.972000e-01   p_cons 9.490000e-02   p_joint 2.380000e-01

Joint ci ratio: 4.443735e-02	ci left: 2.738343e-01	ci right 2.863297e-01	k: 5601	n:20000
Cons ci ratio: 8.476450e-02	ci left: 9.249067e-02	ci right 1.007270e-01	k: 1931	n:20000
KS ci ratio: 3.517798e-02	ci left: 3.762553e-01	ci right 3.897787e-01	k: 7660	n:20000
MYPN   20000 perm   5 sec   (3880 perm/sec)   p_kst 3.830000e-01   p_cons 9.655000e-02   p_joint 2.800500e-01

Outputting figure to mutsig2_images.part000000000111/MYPN.15_4039_20000_0.383_0.09655_0.28005.png
                gene_name: MYPN
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 13 percent done.
NAALAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
NAALAD2   10000 perm   2 sec   (4758 perm/sec)   p_kst 6.000000e-04   p_cons 4.170000e-01   p_joint 1.170000e-02

Joint ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
Cons ci ratio: 3.308697e-02	ci left: 4.055159e-01	ci right 4.192096e-01	k: 8247	n:20000
KS ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
NAALAD2   20000 perm   5 sec   (4276 perm/sec)   p_kst 7.500000e-04   p_cons 4.123500e-01   p_joint 4.800000e-03

Joint ci ratio: 3.556384e-01	ci left: 3.317477e-03	ci right 4.781146e-03	k: 120	n:30000
Cons ci ratio: 2.684326e-02	ci left: 4.098819e-01	ci right 4.210678e-01	k: 12464	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
NAALAD2   30000 perm   7 sec   (4097 perm/sec)   p_kst 6.333333e-04   p_cons 4.154667e-01   p_joint 4.000000e-03

Joint ci ratio: 2.413810e-01	ci left: 5.759475e-03	ci right 7.363423e-03	k: 261	n:40000
Cons ci ratio: 2.329123e-02	ci left: 4.097160e-01	ci right 4.193964e-01	k: 16582	n:40000
KS ci ratio: 7.037711e-01	ci left: 5.060773e-04	ci right 1.070500e-03	k: 30	n:40000
NAALAD2   40000 perm   10 sec   (3983 perm/sec)   p_kst 7.500000e-04   p_cons 4.145500e-01   p_joint 6.525000e-03

Joint ci ratio: 2.177464e-01	ci left: 5.738724e-03	ci right 7.159492e-03	k: 321	n:50000
Cons ci ratio: 2.087591e-02	ci left: 4.092185e-01	ci right 4.178715e-01	k: 20677	n:50000
KS ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
NAALAD2   50000 perm   13 sec   (3885 perm/sec)   p_kst 7.800000e-04   p_cons 4.135400e-01   p_joint 6.420000e-03

Joint ci ratio: 2.371436e-01	ci left: 3.995881e-03	ci right 5.086230e-03	k: 271	n:60000
Cons ci ratio: 1.906656e-02	ci left: 4.093558e-01	ci right 4.172526e-01	k: 24798	n:60000
KS ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
NAALAD2   60000 perm   16 sec   (3777 perm/sec)   p_kst 8.500000e-04   p_cons 4.133000e-01   p_joint 4.516667e-03

Joint ci ratio: 2.262132e-01	ci left: 3.788330e-03	ci right 4.767749e-03	k: 298	n:70000
Cons ci ratio: 1.769864e-02	ci left: 4.083789e-01	ci right 4.156855e-01	k: 28842	n:70000
KS ci ratio: 5.236187e-01	ci left: 5.919607e-04	ci right 1.022594e-03	k: 55	n:70000
NAALAD2   70000 perm   19 sec   (3714 perm/sec)   p_kst 7.857143e-04   p_cons 4.120286e-01   p_joint 4.257143e-03

Joint ci ratio: 2.156704e-01	ci left: 3.669020e-03	ci right 4.567529e-03	k: 328	n:80000
Cons ci ratio: 1.651779e-02	ci left: 4.097224e-01	ci right 4.165589e-01	k: 33051	n:80000
KS ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
NAALAD2   80000 perm   22 sec   (3646 perm/sec)   p_kst 8.125000e-04   p_cons 4.131375e-01   p_joint 4.100000e-03

Joint ci ratio: 1.827019e-01	ci left: 4.623870e-03	ci right 5.564020e-03	k: 457	n:90000
Cons ci ratio: 1.556972e-02	ci left: 4.100247e-01	ci right 4.164698e-01	k: 37192	n:90000
KS ci ratio: 4.524515e-01	ci left: 6.456747e-04	ci right 1.032116e-03	k: 74	n:90000
NAALAD2   90000 perm   25 sec   (3589 perm/sec)   p_kst 8.222222e-04   p_cons 4.132444e-01   p_joint 5.077778e-03

Joint ci ratio: 1.755753e-01	ci left: 4.524426e-03	ci right 5.404664e-03	k: 495	n:100000
Cons ci ratio: 1.475751e-02	ci left: 4.106251e-01	ci right 4.167399e-01	k: 41368	n:100000
KS ci ratio: 4.250008e-01	ci left: 6.700705e-04	ci right 1.039873e-03	k: 84	n:100000
NAALAD2   100000 perm   28 sec   (3532 perm/sec)   p_kst 8.400000e-04   p_cons 4.136800e-01   p_joint 4.950000e-03

Joint ci ratio: 1.697017e-01	ci left: 4.417529e-03	ci right 5.245274e-03	k: 530	n:110000
Cons ci ratio: 1.407756e-02	ci left: 4.105331e-01	ci right 4.163624e-01	k: 45479	n:110000
KS ci ratio: 4.041425e-01	ci left: 6.824435e-04	ci right 1.035640e-03	k: 93	n:110000
NAALAD2   110000 perm   32 sec   (3479 perm/sec)   p_kst 8.454545e-04   p_cons 4.134455e-01   p_joint 4.818182e-03

Joint ci ratio: 1.675319e-01	ci left: 4.161098e-03	ci right 4.929815e-03	k: 544	n:120000
Cons ci ratio: 1.349134e-02	ci left: 4.101872e-01	ci right 4.157670e-01	k: 49557	n:120000
KS ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
NAALAD2   120000 perm   35 sec   (3423 perm/sec)   p_kst 8.583333e-04   p_cons 4.129750e-01   p_joint 4.533333e-03

Joint ci ratio: 1.652924e-01	ci left: 3.951556e-03	ci right 4.670831e-03	k: 559	n:130000
Cons ci ratio: 1.297808e-02	ci left: 4.096991e-01	ci right 4.150586e-01	k: 53609	n:130000
KS ci ratio: 3.702442e-01	ci left: 7.024607e-04	ci right 1.028161e-03	k: 111	n:130000
NAALAD2   130000 perm   39 sec   (3374 perm/sec)   p_kst 8.538462e-04   p_cons 4.123769e-01   p_joint 4.300000e-03

Joint ci ratio: 1.632813e-01	ci left: 3.765160e-03	ci right 4.441347e-03	k: 573	n:140000
Cons ci ratio: 1.249841e-02	ci left: 4.100908e-01	ci right 4.152556e-01	k: 57774	n:140000
KS ci ratio: 3.490629e-01	ci left: 7.432594e-04	ci right 1.063708e-03	k: 125	n:140000
NAALAD2   140000 perm   42 sec   (3326 perm/sec)   p_kst 8.928571e-04   p_cons 4.126714e-01   p_joint 4.092857e-03

Joint ci ratio: 1.602496e-01	ci left: 3.654862e-03	ci right 4.297878e-03	k: 595	n:150000
Cons ci ratio: 1.205400e-02	ci left: 4.110062e-01	ci right 4.159971e-01	k: 62025	n:150000
KS ci ratio: 3.397553e-01	ci left: 7.363392e-04	ci right 1.043482e-03	k: 132	n:150000
NAALAD2   150000 perm   46 sec   (3280 perm/sec)   p_kst 8.800000e-04   p_cons 4.135000e-01   p_joint 3.966667e-03

Joint ci ratio: 1.709648e-01	ci left: 2.994975e-03	ci right 3.560761e-03	k: 523	n:160000
Cons ci ratio: 1.166944e-02	ci left: 4.111604e-01	ci right 4.159928e-01	k: 66172	n:160000
KS ci ratio: 3.299770e-01	ci left: 7.361149e-04	ci right 1.032453e-03	k: 140	n:160000
NAALAD2   160000 perm   50 sec   (3232 perm/sec)   p_kst 8.750000e-04   p_cons 4.135750e-01   p_joint 3.268750e-03

Joint ci ratio: 1.693679e-01	ci left: 2.875103e-03	ci right 3.412651e-03	k: 533	n:170000
Cons ci ratio: 1.132786e-02	ci left: 4.109401e-01	ci right 4.156275e-01	k: 70258	n:170000
KS ci ratio: 3.209972e-01	ci left: 7.360287e-04	ci right 1.022611e-03	k: 148	n:170000
NAALAD2   170000 perm   53 sec   (3186 perm/sec)   p_kst 8.705882e-04   p_cons 4.132824e-01   p_joint 3.135294e-03

Joint ci ratio: 1.679689e-01	ci left: 2.763250e-03	ci right 3.275186e-03	k: 542	n:180000
Cons ci ratio: 1.100377e-02	ci left: 4.112236e-01	ci right 4.157792e-01	k: 74430	n:180000
KS ci ratio: 3.147255e-01	ci left: 7.258120e-04	ci right 1.001784e-03	k: 154	n:180000
NAALAD2   180000 perm   57 sec   (3144 perm/sec)   p_kst 8.555556e-04   p_cons 4.135000e-01   p_joint 3.011111e-03

Joint ci ratio: 1.678274e-01	ci left: 2.622842e-03	ci right 3.108312e-03	k: 543	n:190000
Cons ci ratio: 1.070901e-02	ci left: 4.113422e-01	ci right 4.157762e-01	k: 78576	n:190000
KS ci ratio: 3.107453e-01	ci left: 7.070107e-04	ci right 9.717598e-04	k: 158	n:190000
NAALAD2   190000 perm   61 sec   (3098 perm/sec)   p_kst 8.315789e-04   p_cons 4.135579e-01   p_joint 2.857895e-03

Joint ci ratio: 1.667670e-01	ci left: 2.525224e-03	ci right 2.989375e-03	k: 550	n:200000
Cons ci ratio: 1.043975e-02	ci left: 4.113105e-01	ci right 4.156320e-01	k: 82694	n:200000
KS ci ratio: 2.979024e-01	ci left: 7.363195e-04	ci right 9.984958e-04	k: 172	n:200000
NAALAD2   200000 perm   65 sec   (3060 perm/sec)   p_kst 8.600000e-04   p_cons 4.134700e-01   p_joint 2.750000e-03

Joint ci ratio: 1.670823e-01	ci left: 2.395835e-03	ci right 2.837120e-03	k: 548	n:210000
Cons ci ratio: 1.018833e-02	ci left: 4.113545e-01	ci right 4.155717e-01	k: 86827	n:210000
KS ci ratio: 2.896478e-01	ci left: 7.453680e-04	ci right 1.002065e-03	k: 182	n:210000
NAALAD2   210000 perm   70 sec   (3022 perm/sec)   p_kst 8.666667e-04   p_cons 4.134619e-01   p_joint 2.609524e-03

Joint ci ratio: 1.648497e-01	ci left: 2.352279e-03	ci right 2.779177e-03	k: 563	n:220000
Cons ci ratio: 9.952559e-03	ci left: 4.114774e-01	ci right 4.155976e-01	k: 90978	n:220000
KS ci ratio: 2.865363e-01	ci left: 7.283548e-04	ci right 9.760105e-04	k: 186	n:220000
NAALAD2   220000 perm   74 sec   (2986 perm/sec)   p_kst 8.454545e-04   p_cons 4.135364e-01   p_joint 2.559091e-03

Joint ci ratio: 1.686480e-01	ci left: 2.145827e-03	ci right 2.545141e-03	k: 538	n:230000
Cons ci ratio: 9.727202e-03	ci left: 4.118513e-01	ci right 4.158813e-01	k: 95189	n:230000
KS ci ratio: 2.827829e-01	ci left: 7.168739e-04	ci right 9.568632e-04	k: 191	n:230000
NAALAD2   230000 perm   78 sec   (2950 perm/sec)   p_kst 8.304348e-04   p_cons 4.138652e-01   p_joint 2.339130e-03

Joint ci ratio: 1.728868e-01	ci left: 1.952696e-03	ci right 2.326157e-03	k: 512	n:240000
Cons ci ratio: 9.526706e-03	ci left: 4.116745e-01	ci right 4.156193e-01	k: 99275	n:240000
KS ci ratio: 2.763791e-01	ci left: 7.218758e-04	ci right 9.571156e-04	k: 200	n:240000
NAALAD2   240000 perm   82 sec   (2915 perm/sec)   p_kst 8.333333e-04   p_cons 4.136458e-01   p_joint 2.133333e-03

Joint ci ratio: 1.365838e-01	ci left: 3.059645e-03	ci right 3.511992e-03	k: 820	n:250000
Cons ci ratio: 9.328957e-03	ci left: 4.119883e-01	ci right 4.158537e-01	k: 103480	n:250000
KS ci ratio: 2.691120e-01	ci left: 7.339931e-04	ci right 9.658313e-04	k: 211	n:250000
NAALAD2   250000 perm   87 sec   (2879 perm/sec)   p_kst 8.440000e-04   p_cons 4.139200e-01   p_joint 3.280000e-03

Joint ci ratio: 1.338403e-01	ci left: 3.068313e-03	ci right 3.512104e-03	k: 854	n:260000
Cons ci ratio: 9.143100e-03	ci left: 4.122749e-01	ci right 4.160655e-01	k: 107684	n:260000
KS ci ratio: 2.653841e-01	ci left: 7.272931e-04	ci right 9.533039e-04	k: 217	n:260000
NAALAD2   260000 perm   91 sec   (2847 perm/sec)   p_kst 8.346154e-04   p_cons 4.141692e-01   p_joint 3.284615e-03

Joint ci ratio: 1.347207e-01	ci left: 2.915284e-03	ci right 3.339937e-03	k: 843	n:270000
Cons ci ratio: 8.975112e-03	ci left: 4.121523e-01	ci right 4.158718e-01	k: 111783	n:270000
KS ci ratio: 2.583666e-01	ci left: 7.418846e-04	ci right 9.653503e-04	k: 229	n:270000
NAALAD2   270000 perm   96 sec   (2814 perm/sec)   p_kst 8.481481e-04   p_cons 4.140111e-01   p_joint 3.122222e-03

Joint ci ratio: 1.671371e-01	ci left: 1.796830e-03	ci right 2.127901e-03	k: 548	n:280000
Cons ci ratio: 8.811643e-03	ci left: 4.122818e-01	ci right 4.159343e-01	k: 115950	n:280000
KS ci ratio: 2.545231e-01	ci left: 7.387818e-04	ci right 9.574771e-04	k: 236	n:280000
NAALAD2   280000 perm   101 sec   (2783 perm/sec)   p_kst 8.428571e-04   p_cons 4.141071e-01   p_joint 1.957143e-03

Joint ci ratio: 1.487302e-01	ci left: 2.211896e-03	ci right 2.570578e-03	k: 692	n:290000
Cons ci ratio: 8.660546e-03	ci left: 4.121927e-01	ci right 4.157814e-01	k: 120056	n:290000
KS ci ratio: 2.717051e-01	ci left: 6.198894e-04	ci right 8.178950e-04	k: 207	n:290000
NAALAD2   290000 perm   105 sec   (2751 perm/sec)   p_kst 7.137931e-04   p_cons 4.139862e-01   p_joint 2.386207e-03

Joint ci ratio: 1.479889e-01	ci left: 2.160629e-03	ci right 2.509096e-03	k: 699	n:300000
Cons ci ratio: 8.515910e-03	ci left: 4.121700e-01	ci right 4.156983e-01	k: 124180	n:300000
KS ci ratio: 2.666257e-01	ci left: 6.240940e-04	ci right 8.190934e-04	k: 215	n:300000
NAALAD2   300000 perm   110 sec   (2720 perm/sec)   p_kst 7.166667e-04   p_cons 4.139333e-01   p_joint 2.330000e-03

Joint ci ratio: 1.464303e-01	ci left: 2.137534e-03	ci right 2.478328e-03	k: 714	n:310000
Cons ci ratio: 8.374221e-03	ci left: 4.123846e-01	ci right 4.158557e-01	k: 128377	n:310000
KS ci ratio: 2.600838e-01	ci left: 6.371043e-04	ci right 8.304910e-04	k: 226	n:310000
NAALAD2   310000 perm   115 sec   (2691 perm/sec)   p_kst 7.290323e-04   p_cons 4.141194e-01   p_joint 2.303226e-03

Joint ci ratio: 1.455205e-01	ci left: 2.097831e-03	ci right 2.430036e-03	k: 723	n:320000
Cons ci ratio: 8.239323e-03	ci left: 4.125894e-01	ci right 4.160059e-01	k: 132575	n:320000
KS ci ratio: 2.572669e-01	ci left: 6.318065e-04	ci right 8.211744e-04	k: 231	n:320000
NAALAD2   320000 perm   120 sec   (2660 perm/sec)   p_kst 7.218750e-04   p_cons 4.142969e-01   p_joint 2.259375e-03

Joint ci ratio: 1.433589e-01	ci left: 2.098518e-03	ci right 2.425473e-03	k: 745	n:330000
Cons ci ratio: 8.110991e-03	ci left: 4.127670e-01	ci right 4.161315e-01	k: 136768	n:330000
KS ci ratio: 2.513751e-01	ci left: 6.438704e-04	ci right 8.317429e-04	k: 242	n:330000
NAALAD2   330000 perm   125 sec   (2632 perm/sec)   p_kst 7.333333e-04   p_cons 4.144485e-01   p_joint 2.257576e-03

Joint ci ratio: 1.408320e-01	ci left: 2.113386e-03	ci right 2.436367e-03	k: 772	n:340000
Cons ci ratio: 7.993462e-03	ci left: 4.126317e-01	ci right 4.159462e-01	k: 140858	n:340000
KS ci ratio: 2.483286e-01	ci left: 6.414751e-04	ci right 8.260298e-04	k: 248	n:340000
NAALAD2   340000 perm   131 sec   (2604 perm/sec)   p_kst 7.294118e-04   p_cons 4.142882e-01   p_joint 2.270588e-03

Joint ci ratio: 1.422263e-01	ci left: 2.011657e-03	ci right 2.322392e-03	k: 757	n:350000
Cons ci ratio: 7.879273e-03	ci left: 4.126045e-01	ci right 4.158712e-01	k: 144983	n:350000
KS ci ratio: 2.458731e-01	ci left: 6.365481e-04	ci right 8.175978e-04	k: 253	n:350000
NAALAD2   350000 perm   136 sec   (2576 perm/sec)   p_kst 7.228571e-04   p_cons 4.142371e-01   p_joint 2.162857e-03

Joint ci ratio: 1.319814e-01	ci left: 2.283078e-03	ci right 2.608347e-03	k: 879	n:360000
Cons ci ratio: 8.172956e-03	ci left: 3.882813e-01	ci right 3.914705e-01	k: 140355	n:360000
KS ci ratio: 2.420899e-01	ci left: 6.397301e-04	ci right 8.184647e-04	k: 261	n:360000
NAALAD2   360000 perm   141 sec   (2549 perm/sec)   p_kst 7.250000e-04   p_cons 3.898750e-01   p_joint 2.441667e-03

Joint ci ratio: 1.341421e-01	ci left: 2.148207e-03	ci right 2.459670e-03	k: 851	n:370000
Cons ci ratio: 8.060370e-03	ci left: 3.883847e-01	ci right 3.915305e-01	k: 144284	n:370000
KS ci ratio: 2.384762e-01	ci left: 6.427602e-04	ci right 8.192647e-04	k: 269	n:370000
NAALAD2   370000 perm   147 sec   (2523 perm/sec)   p_kst 7.270270e-04   p_cons 3.899568e-01   p_joint 2.300000e-03

Joint ci ratio: 1.344629e-01	ci left: 2.081497e-03	ci right 2.384068e-03	k: 847	n:380000
Cons ci ratio: 7.953764e-03	ci left: 3.883961e-01	ci right 3.915003e-01	k: 148180	n:380000
KS ci ratio: 2.358703e-01	ci left: 6.406967e-04	ci right 8.144313e-04	k: 275	n:380000
NAALAD2   380000 perm   152 sec   (2496 perm/sec)   p_kst 7.236842e-04   p_cons 3.899474e-01   p_joint 2.228947e-03

Joint ci ratio: 1.329819e-01	ci left: 2.075213e-03	ci right 2.373285e-03	k: 866	n:390000
Cons ci ratio: 7.853267e-03	ci left: 3.882868e-01	ci right 3.913507e-01	k: 152029	n:390000
KS ci ratio: 2.321156e-01	ci left: 6.459929e-04	ci right 8.179754e-04	k: 284	n:390000
NAALAD2   390000 perm   158 sec   (2469 perm/sec)   p_kst 7.282051e-04   p_cons 3.898179e-01   p_joint 2.220513e-03

Joint ci ratio: 1.318475e-01	ci left: 2.059590e-03	ci right 2.352696e-03	k: 881	n:400000
Cons ci ratio: 7.754896e-03	ci left: 3.882807e-01	ci right 3.913059e-01	k: 155917	n:400000
KS ci ratio: 2.305046e-01	ci left: 6.392634e-04	ci right 8.081049e-04	k: 288	n:400000
NAALAD2   400000 perm   164 sec   (2443 perm/sec)   p_kst 7.200000e-04   p_cons 3.897925e-01   p_joint 2.202500e-03

Joint ci ratio: 1.332977e-01	ci left: 1.964545e-03	ci right 2.247444e-03	k: 862	n:410000
Cons ci ratio: 7.662645e-03	ci left: 3.881191e-01	ci right 3.911069e-01	k: 159741	n:410000
KS ci ratio: 2.266165e-01	ci left: 6.466658e-04	ci right 8.141789e-04	k: 298	n:410000
NAALAD2   410000 perm   170 sec   (2418 perm/sec)   p_kst 7.268293e-04   p_cons 3.896122e-01   p_joint 2.102439e-03

Joint ci ratio: 1.333785e-01	ci left: 1.915465e-03	ci right 2.191477e-03	k: 861	n:420000
Cons ci ratio: 7.571978e-03	ci left: 3.880676e-01	ci right 3.910196e-01	k: 163608	n:420000
KS ci ratio: 2.243768e-01	ci left: 6.447477e-04	ci right 8.098851e-04	k: 304	n:420000
NAALAD2   420000 perm   175 sec   (2394 perm/sec)   p_kst 7.238095e-04   p_cons 3.895429e-01   p_joint 2.050000e-03

Joint ci ratio: 1.314105e-01	ci left: 1.929383e-03	ci right 2.202978e-03	k: 887	n:430000
Cons ci ratio: 7.483028e-03	ci left: 3.881095e-01	ci right 3.910269e-01	k: 167514	n:430000
KS ci ratio: 2.207858e-01	ci left: 6.517132e-04	ci right 8.156004e-04	k: 314	n:430000
NAALAD2   430000 perm   181 sec   (2370 perm/sec)   p_kst 7.302326e-04   p_cons 3.895674e-01   p_joint 2.062791e-03

Joint ci ratio: 1.305328e-01	ci left: 1.911911e-03	ci right 2.181077e-03	k: 899	n:440000
Cons ci ratio: 7.399050e-03	ci left: 3.880269e-01	ci right 3.909109e-01	k: 171366	n:440000
KS ci ratio: 2.173619e-01	ci left: 6.583821e-04	ci right 8.210360e-04	k: 324	n:440000
NAALAD2   440000 perm   188 sec   (2347 perm/sec)   p_kst 7.363636e-04   p_cons 3.894682e-01   p_joint 2.043182e-03

Joint ci ratio: 1.318637e-01	ci left: 1.830732e-03	ci right 2.091303e-03	k: 881	n:450000
Cons ci ratio: 7.315956e-03	ci left: 3.880704e-01	ci right 3.909221e-01	k: 175273	n:450000
KS ci ratio: 2.157095e-01	ci left: 6.542597e-04	ci right 8.145038e-04	k: 329	n:450000
NAALAD2   450000 perm   194 sec   (2323 perm/sec)   p_kst 7.311111e-04   p_cons 3.894956e-01   p_joint 1.957778e-03

Joint ci ratio: 1.352906e-01	ci left: 1.698469e-03	ci right 1.947003e-03	k: 837	n:460000
Cons ci ratio: 7.238147e-03	ci left: 3.879449e-01	ci right 3.907652e-01	k: 179103	n:460000
KS ci ratio: 2.137752e-01	ci left: 6.523786e-04	ci right 8.105412e-04	k: 335	n:460000
NAALAD2   460000 perm   200 sec   (2301 perm/sec)   p_kst 7.282609e-04   p_cons 3.893543e-01   p_joint 1.819565e-03

Joint ci ratio: 1.369401e-01	ci left: 1.621223e-03	ci right 1.861582e-03	k: 817	n:470000
Cons ci ratio: 7.159212e-03	ci left: 3.880609e-01	ci right 3.908511e-01	k: 183044	n:470000
KS ci ratio: 2.115826e-01	ci left: 6.525986e-04	ci right 8.089814e-04	k: 342	n:470000
NAALAD2   470000 perm   206 sec   (2279 perm/sec)   p_kst 7.276596e-04   p_cons 3.894553e-01   p_joint 1.738298e-03

Joint ci ratio: 1.352958e-01	ci left: 1.627696e-03	ci right 1.865883e-03	k: 837	n:480000
Cons ci ratio: 7.083021e-03	ci left: 3.881576e-01	ci right 3.909187e-01	k: 186978	n:480000
KS ci ratio: 2.082686e-01	ci left: 6.607151e-04	ci right 8.162468e-04	k: 353	n:480000
NAALAD2   480000 perm   213 sec   (2257 perm/sec)   p_kst 7.354167e-04   p_cons 3.895375e-01   p_joint 1.743750e-03

Joint ci ratio: 1.341800e-01	ci left: 1.622085e-03	ci right 1.857338e-03	k: 851	n:490000
Cons ci ratio: 7.013243e-03	ci left: 3.879772e-01	ci right 3.907098e-01	k: 190778	n:490000
KS ci ratio: 2.056702e-01	ci left: 6.646467e-04	ci right 8.189065e-04	k: 362	n:490000
NAALAD2   490000 perm   219 sec   (2237 perm/sec)   p_kst 7.387755e-04   p_cons 3.893429e-01   p_joint 1.736735e-03

Joint ci ratio: 1.334780e-01	ci left: 1.607040e-03	ci right 1.838795e-03	k: 860	n:500000
Cons ci ratio: 6.943733e-03	ci left: 3.879241e-01	ci right 3.906291e-01	k: 194638	n:500000
KS ci ratio: 2.042687e-01	ci left: 6.608404e-04	ci right 8.130411e-04	k: 367	n:500000
NAALAD2   500000 perm   226 sec   (2216 perm/sec)   p_kst 7.340000e-04   p_cons 3.892760e-01   p_joint 1.720000e-03

Joint ci ratio: 1.323306e-01	ci left: 1.603963e-03	ci right 1.833129e-03	k: 875	n:510000
Cons ci ratio: 6.877611e-03	ci left: 3.877792e-01	ci right 3.904573e-01	k: 198450	n:510000
KS ci ratio: 2.018154e-01	ci left: 6.646328e-04	ci right 8.156420e-04	k: 376	n:510000
NAALAD2   510000 perm   232 sec   (2195 perm/sec)   p_kst 7.372549e-04   p_cons 3.891176e-01   p_joint 1.715686e-03

Joint ci ratio: 1.335602e-01	ci left: 1.543369e-03	ci right 1.766089e-03	k: 859	n:520000
Cons ci ratio: 6.813728e-03	ci left: 3.876131e-01	ci right 3.902651e-01	k: 202248	n:520000
KS ci ratio: 2.010181e-01	ci left: 6.573294e-04	ci right 8.060167e-04	k: 379	n:520000
NAALAD2   520000 perm   239 sec   (2175 perm/sec)   p_kst 7.288462e-04   p_cons 3.889385e-01   p_joint 1.651923e-03

Joint ci ratio: 1.189396e-01	ci left: 1.923608e-03	ci right 2.168679e-03	k: 1083	n:530000
Cons ci ratio: 6.579206e-03	ci left: 3.998065e-01	ci right 4.024474e-01	k: 212597	n:530000
KS ci ratio: 1.991918e-01	ci left: 6.574728e-04	ci right 8.046773e-04	k: 386	n:530000
NAALAD2   530000 perm   246 sec   (2156 perm/sec)   p_kst 7.283019e-04   p_cons 4.011264e-01   p_joint 2.043396e-03

Joint ci ratio: 1.183959e-01	ci left: 1.905953e-03	ci right 2.147588e-03	k: 1093	n:540000
Cons ci ratio: 6.518387e-03	ci left: 3.997905e-01	ci right 4.024068e-01	k: 216593	n:540000
KS ci ratio: 1.989362e-01	ci left: 6.470565e-04	ci right 7.917204e-04	k: 387	n:540000
NAALAD2   540000 perm   253 sec   (2137 perm/sec)   p_kst 7.166667e-04   p_cons 4.010981e-01   p_joint 2.024074e-03

Joint ci ratio: 1.182898e-01	ci left: 1.874826e-03	ci right 2.112287e-03	k: 1095	n:550000
Cons ci ratio: 6.459248e-03	ci left: 3.997734e-01	ci right 4.023658e-01	k: 220588	n:550000
KS ci ratio: 1.966680e-01	ci left: 6.508452e-04	ci right 7.944983e-04	k: 396	n:550000
NAALAD2   550000 perm   260 sec   (2118 perm/sec)   p_kst 7.200000e-04   p_cons 4.010691e-01   p_joint 1.990909e-03

Joint ci ratio: 1.172250e-01	ci left: 1.876010e-03	ci right 2.111333e-03	k: 1115	n:560000
Cons ci ratio: 6.399074e-03	ci left: 3.999534e-01	ci right 4.025227e-01	k: 224693	n:560000
KS ci ratio: 1.951987e-01	ci left: 6.494117e-04	ci right 7.915501e-04	k: 402	n:560000
NAALAD2   560000 perm   267 sec   (2099 perm/sec)   p_kst 7.178571e-04   p_cons 4.012375e-01   p_joint 1.991071e-03

Joint ci ratio: 1.160351e-01	ci left: 1.882271e-03	ci right 2.115819e-03	k: 1138	n:570000
Cons ci ratio: 6.341359e-03	ci left: 4.000657e-01	ci right 4.026125e-01	k: 228763	n:570000
KS ci ratio: 1.930546e-01	ci left: 6.530407e-04	ci right 7.942191e-04	k: 411	n:570000
NAALAD2   570000 perm   274 sec   (2080 perm/sec)   p_kst 7.210526e-04   p_cons 4.013386e-01   p_joint 1.996491e-03

Joint ci ratio: 1.164992e-01	ci left: 1.834750e-03	ci right 2.063374e-03	k: 1129	n:580000
Cons ci ratio: 6.286554e-03	ci left: 4.000692e-01	ci right 4.025939e-01	k: 232772	n:580000
KS ci ratio: 1.912070e-01	ci left: 6.549111e-04	ci right 7.949813e-04	k: 419	n:580000
NAALAD2   580000 perm   281 sec   (2062 perm/sec)   p_kst 7.224138e-04   p_cons 4.013310e-01   p_joint 1.946552e-03

Joint ci ratio: 1.169165e-01	ci left: 1.790487e-03	ci right 2.014450e-03	k: 1121	n:590000
Cons ci ratio: 6.232618e-03	ci left: 4.001133e-01	ci right 4.026165e-01	k: 236805	n:590000
KS ci ratio: 1.889701e-01	ci left: 6.599536e-04	ci right 7.992616e-04	k: 429	n:590000
NAALAD2   590000 perm   289 sec   (2044 perm/sec)   p_kst 7.271186e-04   p_cons 4.013644e-01   p_joint 1.900000e-03

Joint ci ratio: 1.159899e-01	ci left: 1.789771e-03	ci right 2.011749e-03	k: 1139	n:600000
Cons ci ratio: 6.180904e-03	ci left: 4.000894e-01	ci right 4.025716e-01	k: 240798	n:600000
KS ci ratio: 1.872363e-01	ci left: 6.616600e-04	ci right 7.999010e-04	k: 437	n:600000
NAALAD2   600000 perm   296 sec   (2027 perm/sec)   p_kst 7.283333e-04   p_cons 4.013300e-01   p_joint 1.898333e-03

Joint ci ratio: 1.176579e-01	ci left: 1.709500e-03	ci right 1.924783e-03	k: 1107	n:610000
Cons ci ratio: 6.127926e-03	ci left: 4.002646e-01	ci right 4.027265e-01	k: 244912	n:610000
KS ci ratio: 1.865990e-01	ci left: 6.555008e-04	ci right 7.919360e-04	k: 440	n:610000
NAALAD2   610000 perm   303 sec   (2010 perm/sec)   p_kst 7.213115e-04   p_cons 4.014951e-01   p_joint 1.814754e-03

Joint ci ratio: 1.051004e-01	ci left: 2.121021e-03	ci right 2.357862e-03	k: 1387	n:620000
Cons ci ratio: 6.078061e-03	ci left: 4.002940e-01	ci right 4.027360e-01	k: 248939	n:620000
KS ci ratio: 1.845183e-01	ci left: 6.603082e-04	ci right 7.960401e-04	k: 450	n:620000
NAALAD2   620000 perm   311 sec   (1994 perm/sec)   p_kst 7.258065e-04   p_cons 4.015145e-01   p_joint 2.237097e-03

Joint ci ratio: 1.043886e-01	ci left: 2.116723e-03	ci right 2.351384e-03	k: 1406	n:630000
Cons ci ratio: 6.029713e-03	ci left: 4.002971e-01	ci right 4.027197e-01	k: 252950	n:630000
KS ci ratio: 1.841113e-01	ci left: 6.528550e-04	ci right 7.867258e-04	k: 452	n:630000
NAALAD2   630000 perm   319 sec   (1978 perm/sec)   p_kst 7.174603e-04   p_cons 4.015079e-01   p_joint 2.231746e-03

Joint ci ratio: 9.472432e-02	ci left: 2.542303e-03	ci right 2.796607e-03	k: 1707	n:640000
Cons ci ratio: 5.981916e-03	ci left: 4.003471e-01	ci right 4.027507e-01	k: 256991	n:640000
KS ci ratio: 1.827051e-01	ci left: 6.530895e-04	ci right 7.858723e-04	k: 459	n:640000
NAALAD2   640000 perm   326 sec   (1961 perm/sec)   p_kst 7.171875e-04   p_cons 4.015484e-01   p_joint 2.667187e-03

Joint ci ratio: 9.398436e-02	ci left: 2.543749e-03	ci right 2.796100e-03	k: 1734	n:650000
Cons ci ratio: 5.936493e-03	ci left: 4.002941e-01	ci right 4.026791e-01	k: 260966	n:650000
KS ci ratio: 1.811367e-01	ci left: 6.547892e-04	ci right 7.866494e-04	k: 467	n:650000
NAALAD2   650000 perm   334 sec   (1946 perm/sec)   p_kst 7.184615e-04   p_cons 4.014862e-01   p_joint 2.667692e-03

Joint ci ratio: 9.315552e-02	ci left: 2.551079e-03	ci right 2.801803e-03	k: 1765	n:660000
Cons ci ratio: 5.891234e-03	ci left: 4.003125e-01	ci right 4.026793e-01	k: 264987	n:660000
KS ci ratio: 1.792316e-01	ci left: 6.593365e-04	ci right 7.905645e-04	k: 477	n:660000
NAALAD2   660000 perm   342 sec   (1930 perm/sec)   p_kst 7.227273e-04   p_cons 4.014955e-01   p_joint 2.674242e-03

Joint ci ratio: 9.339630e-02	ci left: 2.499880e-03	ci right 2.746242e-03	k: 1756	n:670000
Cons ci ratio: 5.847303e-03	ci left: 4.003050e-01	ci right 4.026540e-01	k: 268991	n:670000
KS ci ratio: 1.781173e-01	ci left: 6.580503e-04	ci right 7.881204e-04	k: 483	n:670000
NAALAD2   670000 perm   350 sec   (1915 perm/sec)   p_kst 7.208955e-04   p_cons 4.014791e-01   p_joint 2.620896e-03

Joint ci ratio: 8.706754e-02	ci left: 2.842624e-03	ci right 3.102816e-03	k: 2020	n:680000
Cons ci ratio: 5.802583e-03	ci left: 4.004433e-01	ci right 4.027751e-01	k: 273094	n:680000
KS ci ratio: 1.768431e-01	ci left: 6.582099e-04	ci right 7.872813e-04	k: 490	n:680000
NAALAD2   680000 perm   358 sec   (1900 perm/sec)   p_kst 7.205882e-04   p_cons 4.016088e-01   p_joint 2.970588e-03

Joint ci ratio: 8.761459e-02	ci left: 2.765981e-03	ci right 3.020830e-03	k: 1995	n:690000
Cons ci ratio: 5.761530e-03	ci left: 4.003561e-01	ci right 4.026708e-01	k: 277044	n:690000
KS ci ratio: 1.759498e-01	ci left: 6.555970e-04	ci right 7.834375e-04	k: 495	n:690000
NAALAD2   690000 perm   366 sec   (1885 perm/sec)   p_kst 7.173913e-04   p_cons 4.015130e-01   p_joint 2.891304e-03

Joint ci ratio: 8.711449e-02	ci left: 2.758606e-03	ci right 3.011250e-03	k: 2018	n:700000
Cons ci ratio: 5.720962e-03	ci left: 4.003028e-01	ci right 4.026009e-01	k: 281016	n:700000
KS ci ratio: 1.747212e-01	ci left: 6.557925e-04	ci right 7.826840e-04	k: 502	n:700000
NAALAD2   700000 perm   374 sec   (1871 perm/sec)   p_kst 7.171429e-04   p_cons 4.014514e-01   p_joint 2.882857e-03

Joint ci ratio: 8.906160e-02	ci left: 2.599906e-03	ci right 2.843616e-03	k: 1931	n:710000
Cons ci ratio: 5.679923e-03	ci left: 4.003623e-01	ci right 4.026442e-01	k: 285067	n:710000
KS ci ratio: 1.742030e-01	ci left: 6.505967e-04	ci right 7.760702e-04	k: 505	n:710000
NAALAD2   710000 perm   382 sec   (1857 perm/sec)   p_kst 7.112676e-04   p_cons 4.015028e-01   p_joint 2.719718e-03

Joint ci ratio: 8.894796e-02	ci left: 2.570585e-03	ci right 2.811222e-03	k: 1936	n:720000
Cons ci ratio: 5.641875e-03	ci left: 4.002397e-01	ci right 4.025055e-01	k: 288988	n:720000
KS ci ratio: 1.731794e-01	ci left: 6.495317e-04	ci right 7.739867e-04	k: 511	n:720000
NAALAD2   720000 perm   391 sec   (1843 perm/sec)   p_kst 7.097222e-04   p_cons 4.013722e-01   p_joint 2.688889e-03

Joint ci ratio: 8.842477e-02	ci left: 2.566179e-03	ci right 2.804918e-03	k: 1959	n:730000
Cons ci ratio: 5.602743e-03	ci left: 4.002780e-01	ci right 4.025283e-01	k: 293024	n:730000
KS ci ratio: 1.720076e-01	ci left: 6.498088e-04	ci right 7.733870e-04	k: 518	n:730000
NAALAD2   730000 perm   399 sec   (1829 perm/sec)   p_kst 7.095890e-04   p_cons 4.014027e-01   p_joint 2.683562e-03

Joint ci ratio: 8.782193e-02	ci left: 2.567183e-03	ci right 2.804304e-03	k: 1986	n:740000
Cons ci ratio: 5.564727e-03	ci left: 4.002883e-01	ci right 4.025233e-01	k: 297040	n:740000
KS ci ratio: 1.706970e-01	ci left: 6.513748e-04	ci right 7.742098e-04	k: 526	n:740000
NAALAD2   740000 perm   408 sec   (1815 perm/sec)   p_kst 7.108108e-04   p_cons 4.014054e-01   p_joint 2.683784e-03

Joint ci ratio: 8.714453e-02	ci left: 2.573384e-03	ci right 2.809150e-03	k: 2017	n:750000
Cons ci ratio: 5.528042e-03	ci left: 4.002490e-01	ci right 4.024691e-01	k: 301019	n:750000
KS ci ratio: 1.694158e-01	ci left: 6.529025e-04	ci right 7.750072e-04	k: 534	n:750000
NAALAD2   750000 perm   416 sec   (1801 perm/sec)   p_kst 7.120000e-04   p_cons 4.013587e-01   p_joint 2.689333e-03

Joint ci ratio: 8.161382e-02	ci left: 2.902774e-03	ci right 3.151038e-03	k: 2299	n:760000
Cons ci ratio: 5.492871e-03	ci left: 4.001412e-01	ci right 4.023464e-01	k: 304945	n:760000
KS ci ratio: 1.677001e-01	ci left: 6.581750e-04	ci right 7.798932e-04	k: 545	n:760000
NAALAD2   760000 perm   425 sec   (1787 perm/sec)   p_kst 7.171053e-04   p_cons 4.012434e-01   p_joint 3.025000e-03

Joint ci ratio: 8.106927e-02	ci left: 2.904517e-03	ci right 3.151194e-03	k: 2330	n:770000
Cons ci ratio: 5.457550e-03	ci left: 4.001075e-01	ci right 4.022984e-01	k: 308926	n:770000
KS ci ratio: 1.670895e-01	ci left: 6.546043e-04	ci right 7.751771e-04	k: 549	n:770000
NAALAD2   770000 perm   434 sec   (1773 perm/sec)   p_kst 7.129870e-04   p_cons 4.012026e-01   p_joint 3.025974e-03

Joint ci ratio: 8.124583e-02	ci left: 2.854716e-03	ci right 3.097717e-03	k: 2320	n:780000
Cons ci ratio: 5.422424e-03	ci left: 4.001171e-01	ci right 4.022939e-01	k: 312940	n:780000
KS ci ratio: 1.660363e-01	ci left: 6.548122e-04	ci right 7.745870e-04	k: 556	n:780000
NAALAD2   780000 perm   443 sec   (1761 perm/sec)   p_kst 7.128205e-04   p_cons 4.012051e-01   p_joint 2.974359e-03

Joint ci ratio: 8.135290e-02	ci left: 2.811137e-03	ci right 3.050758e-03	k: 2314	n:790000
Cons ci ratio: 5.388962e-03	ci left: 4.000379e-01	ci right 4.022008e-01	k: 316884	n:790000
KS ci ratio: 1.651493e-01	ci left: 6.538036e-04	ci right 7.726916e-04	k: 562	n:790000
NAALAD2   790000 perm   452 sec   (1748 perm/sec)   p_kst 7.113924e-04   p_cons 4.011190e-01   p_joint 2.929114e-03

Joint ci ratio: 8.219545e-02	ci left: 2.718444e-03	ci right 2.952679e-03	k: 2267	n:800000
Cons ci ratio: 5.353910e-03	ci left: 4.001582e-01	ci right 4.023075e-01	k: 320986	n:800000
KS ci ratio: 1.638447e-01	ci left: 6.564180e-04	ci right 7.747456e-04	k: 571	n:800000
NAALAD2   800000 perm   461 sec   (1735 perm/sec)   p_kst 7.137500e-04   p_cons 4.012325e-01   p_joint 2.833750e-03

Joint ci ratio: 8.160368e-02	ci left: 2.724790e-03	ci right 2.957801e-03	k: 2300	n:810000
Cons ci ratio: 5.321242e-03	ci left: 4.001212e-01	ci right 4.022573e-01	k: 324963	n:810000
KS ci ratio: 1.624307e-01	ci left: 6.601559e-04	ci right 7.780299e-04	k: 581	n:810000
NAALAD2   810000 perm   470 sec   (1723 perm/sec)   p_kst 7.172840e-04   p_cons 4.011889e-01   p_joint 2.839506e-03

Joint ci ratio: 8.111169e-02	ci left: 2.725012e-03	ci right 2.956571e-03	k: 2328	n:820000
Cons ci ratio: 5.288882e-03	ci left: 4.001108e-01	ci right 4.022338e-01	k: 328961	n:820000
KS ci ratio: 1.613257e-01	ci left: 6.614661e-04	ci right 7.786927e-04	k: 589	n:820000
NAALAD2   820000 perm   479 sec   (1711 perm/sec)   p_kst 7.182927e-04   p_cons 4.011720e-01   p_joint 2.839024e-03

Joint ci ratio: 8.092167e-02	ci left: 2.705164e-03	ci right 2.934472e-03	k: 2339	n:830000
Cons ci ratio: 5.255933e-03	ci left: 4.002079e-01	ci right 4.023181e-01	k: 333048	n:830000
KS ci ratio: 1.606466e-01	ci left: 6.592780e-04	ci right 7.755775e-04	k: 594	n:830000
NAALAD2   830000 perm   489 sec   (1699 perm/sec)   p_kst 7.156627e-04   p_cons 4.012627e-01   p_joint 2.818072e-03

Joint ci ratio: 8.106210e-02	ci left: 2.663627e-03	ci right 2.889824e-03	k: 2331	n:840000
Cons ci ratio: 5.225300e-03	ci left: 4.001456e-01	ci right 4.022431e-01	k: 337003	n:840000
KS ci ratio: 1.602436e-01	ci left: 6.548573e-04	ci right 7.700593e-04	k: 597	n:840000
NAALAD2   840000 perm   498 sec   (1687 perm/sec)   p_kst 7.107143e-04   p_cons 4.011940e-01   p_joint 2.775000e-03

Joint ci ratio: 8.106343e-02	ci left: 2.632288e-03	ci right 2.855828e-03	k: 2331	n:850000
Cons ci ratio: 5.194268e-03	ci left: 4.001707e-01	ci right 4.022559e-01	k: 341031	n:850000
KS ci ratio: 1.593138e-01	ci left: 6.550592e-04	ci right 7.695641e-04	k: 604	n:850000
NAALAD2   850000 perm   507 sec   (1675 perm/sec)   p_kst 7.105882e-04   p_cons 4.012129e-01   p_joint 2.742353e-03

Joint ci ratio: 8.273565e-02	ci left: 2.495748e-03	ci right 2.712275e-03	k: 2238	n:860000
Cons ci ratio: 5.163932e-03	ci left: 4.001813e-01	ci right 4.022543e-01	k: 345047	n:860000
KS ci ratio: 1.589207e-01	ci left: 6.507916e-04	ci right 7.642430e-04	k: 607	n:860000
NAALAD2   860000 perm   517 sec   (1664 perm/sec)   p_kst 7.058140e-04   p_cons 4.012174e-01   p_joint 2.602326e-03

Joint ci ratio: 8.242377e-02	ci left: 2.486197e-03	ci right 2.701044e-03	k: 2255	n:870000
Cons ci ratio: 5.133618e-03	ci left: 4.002388e-01	ci right 4.022998e-01	k: 349104	n:870000
KS ci ratio: 1.580137e-01	ci left: 6.510381e-04	ci right 7.638234e-04	k: 614	n:870000
NAALAD2   870000 perm   527 sec   (1652 perm/sec)   p_kst 7.057471e-04   p_cons 4.012690e-01   p_joint 2.591954e-03

Joint ci ratio: 8.238838e-02	ci left: 2.460170e-03	ci right 2.672671e-03	k: 2257	n:880000
Cons ci ratio: 5.104991e-03	ci left: 4.001859e-01	ci right 4.022352e-01	k: 353065	n:880000
KS ci ratio: 1.571220e-01	ci left: 6.512809e-04	ci right 7.634115e-04	k: 621	n:880000
NAALAD2   880000 perm   536 sec   (1641 perm/sec)   p_kst 7.056818e-04   p_cons 4.012102e-01   p_joint 2.564773e-03

Joint ci ratio: 8.204423e-02	ci left: 2.453436e-03	ci right 2.664429e-03	k: 2276	n:890000
Cons ci ratio: 5.076350e-03	ci left: 4.001803e-01	ci right 4.022181e-01	k: 357067	n:890000
KS ci ratio: 1.568705e-01	ci left: 6.461219e-04	ci right 7.571694e-04	k: 623	n:890000
NAALAD2   890000 perm   546 sec   (1630 perm/sec)   p_kst 7.000000e-04   p_cons 4.011989e-01   p_joint 2.557303e-03

Joint ci ratio: 8.157977e-02	ci left: 2.454474e-03	ci right 2.664304e-03	k: 2302	n:900000
Cons ci ratio: 5.047626e-03	ci left: 4.002282e-01	ci right 4.022546e-01	k: 361117	n:900000
KS ci ratio: 1.555055e-01	ci left: 6.506874e-04	ci right 7.614558e-04	k: 634	n:900000
NAALAD2   900000 perm   556 sec   (1619 perm/sec)   p_kst 7.044444e-04   p_cons 4.012411e-01   p_joint 2.557778e-03

Joint ci ratio: 8.107078e-02	ci left: 2.458722e-03	ci right 2.667542e-03	k: 2331	n:910000
Cons ci ratio: 5.019349e-03	ci left: 4.002784e-01	ci right 4.022937e-01	k: 365170	n:910000
KS ci ratio: 1.546554e-01	ci left: 6.509308e-04	ci right 7.610787e-04	k: 641	n:910000
NAALAD2   910000 perm   566 sec   (1609 perm/sec)   p_kst 7.043956e-04   p_cons 4.012857e-01   p_joint 2.561538e-03

Joint ci ratio: 8.093286e-02	ci left: 2.440515e-03	ci right 2.647419e-03	k: 2339	n:920000
Cons ci ratio: 4.992073e-03	ci left: 4.002764e-01	ci right 4.022807e-01	k: 369176	n:920000
KS ci ratio: 1.539378e-01	ci left: 6.501254e-04	ci right 7.595795e-04	k: 647	n:920000
NAALAD2   920000 perm   576 sec   (1598 perm/sec)   p_kst 7.032609e-04   p_cons 4.012783e-01   p_joint 2.542391e-03

Joint ci ratio: 9.380582e-02	ci left: 1.786257e-03	ci right 1.963105e-03	k: 1742	n:930000
Cons ci ratio: 4.965370e-03	ci left: 4.002617e-01	ci right 4.022551e-01	k: 373170	n:930000
KS ci ratio: 1.438502e-01	ci left: 7.404512e-04	ci right 8.562428e-04	k: 741	n:930000
NAALAD2   930000 perm   586 sec   (1587 perm/sec)   p_kst 7.967742e-04   p_cons 4.012581e-01   p_joint 1.873118e-03

Joint ci ratio: 9.345823e-02	ci left: 1.780760e-03	ci right 1.956375e-03	k: 1755	n:940000
Cons ci ratio: 4.939048e-03	ci left: 4.002515e-01	ci right 4.022343e-01	k: 377168	n:940000
KS ci ratio: 1.431765e-01	ci left: 7.397535e-04	ci right 8.548479e-04	k: 748	n:940000
NAALAD2   940000 perm   596 sec   (1577 perm/sec)   p_kst 7.957447e-04   p_cons 4.012426e-01   p_joint 1.867021e-03

Joint ci ratio: 9.348582e-02	ci left: 1.760986e-03	ci right 1.934705e-03	k: 1754	n:950000
Cons ci ratio: 4.912569e-03	ci left: 4.002973e-01	ci right 4.022696e-01	k: 381219	n:950000
KS ci ratio: 1.422301e-01	ci left: 7.421171e-04	ci right 8.567513e-04	k: 758	n:950000
NAALAD2   950000 perm   606 sec   (1567 perm/sec)   p_kst 7.978947e-04   p_cons 4.012832e-01   p_joint 1.846316e-03

Joint ci ratio: 9.124813e-02	ci left: 1.831178e-03	ci right 2.007266e-03	k: 1841	n:960000
Cons ci ratio: 4.886596e-03	ci left: 4.003338e-01	ci right 4.022959e-01	k: 385262	n:960000
KS ci ratio: 1.448320e-01	ci left: 7.072707e-04	ci right 8.186938e-04	k: 731	n:960000
NAALAD2   960000 perm   617 sec   (1556 perm/sec)   p_kst 7.614583e-04   p_cons 4.013146e-01   p_joint 1.917708e-03

Joint ci ratio: 9.065920e-02	ci left: 1.836479e-03	ci right 2.011877e-03	k: 1865	n:970000
Cons ci ratio: 4.861480e-03	ci left: 4.003254e-01	ci right 4.022773e-01	k: 389262	n:970000
KS ci ratio: 1.437557e-01	ci left: 7.109102e-04	ci right 8.220028e-04	k: 742	n:970000
NAALAD2   970000 perm   627 sec   (1546 perm/sec)   p_kst 7.649485e-04   p_cons 4.013010e-01   p_joint 1.922680e-03

Joint ci ratio: 8.644542e-02	ci left: 2.003342e-03	ci right 2.185335e-03	k: 2051	n:980000
Cons ci ratio: 4.836551e-03	ci left: 4.003365e-01	ci right 4.022784e-01	k: 393281	n:980000
KS ci ratio: 1.431789e-01	ci left: 7.095586e-04	ci right 8.199572e-04	k: 748	n:980000
NAALAD2   980000 perm   638 sec   (1536 perm/sec)   p_kst 7.632653e-04   p_cons 4.013071e-01   p_joint 2.092857e-03

Joint ci ratio: 8.596491e-02	ci left: 2.005838e-03	ci right 2.186994e-03	k: 2074	n:990000
Cons ci ratio: 4.812478e-03	ci left: 4.002999e-01	ci right 4.022320e-01	k: 397253	n:990000
KS ci ratio: 1.422324e-01	ci left: 7.121318e-04	ci right 8.221361e-04	k: 758	n:990000
NAALAD2   990000 perm   649 sec   (1526 perm/sec)   p_kst 7.656566e-04   p_cons 4.012657e-01   p_joint 2.094949e-03

Joint ci ratio: 8.551274e-02	ci left: 2.007308e-03	ci right 2.187596e-03	k: 2096	n:1000000
Cons ci ratio: 4.788820e-03	ci left: 4.002581e-01	ci right 4.021805e-01	k: 401219	n:1000000
KS ci ratio: 1.413964e-01	ci left: 7.136912e-04	ci right 8.232338e-04	k: 767	n:1000000
NAALAD2   1000000 perm   660 sec   (1516 perm/sec)   p_kst 7.670000e-04   p_cons 4.012190e-01   p_joint 2.096000e-03

Joint ci ratio: 8.678782e-02	ci left: 1.928335e-03	ci right 2.104243e-03	k: 2035	n:1010000
Cons ci ratio: 4.764928e-03	ci left: 4.002756e-01	ci right 4.021884e-01	k: 405244	n:1010000
KS ci ratio: 1.407565e-01	ci left: 7.133110e-04	ci right 8.222582e-04	k: 774	n:1010000
NAALAD2   1010000 perm   670 sec   (1506 perm/sec)   p_kst 7.663366e-04   p_cons 4.012317e-01   p_joint 2.014851e-03

Joint ci ratio: 8.803214e-02	ci left: 1.854766e-03	ci right 2.026513e-03	k: 1978	n:1020000
Cons ci ratio: 4.741526e-03	ci left: 4.002790e-01	ci right 4.021824e-01	k: 409255	n:1020000
KS ci ratio: 1.400355e-01	ci left: 7.138854e-04	ci right 8.223152e-04	k: 782	n:1020000
NAALAD2   1020000 perm   681 sec   (1497 perm/sec)   p_kst 7.666667e-04   p_cons 4.012304e-01   p_joint 1.939216e-03

Joint ci ratio: 8.801069e-02	ci left: 1.837707e-03	ci right 2.007832e-03	k: 1979	n:1030000
Cons ci ratio: 4.719066e-03	ci left: 4.002212e-01	ci right 4.021153e-01	k: 413203	n:1030000
KS ci ratio: 1.392375e-01	ci left: 7.153871e-04	ci right 8.233745e-04	k: 791	n:1030000
NAALAD2   1030000 perm   692 sec   (1488 perm/sec)   p_kst 7.679612e-04   p_cons 4.011680e-01   p_joint 1.921359e-03

Joint ci ratio: 8.759144e-02	ci left: 1.837905e-03	ci right 2.007196e-03	k: 1998	n:1040000
Cons ci ratio: 4.696095e-03	ci left: 4.002491e-01	ci right 4.021341e-01	k: 417239	n:1040000
KS ci ratio: 1.385395e-01	ci left: 7.159335e-04	ci right 8.234168e-04	k: 799	n:1040000
NAALAD2   1040000 perm   703 sec   (1479 perm/sec)   p_kst 7.682692e-04   p_cons 4.011913e-01   p_joint 1.921154e-03

Joint ci ratio: 8.715649e-02	ci left: 1.839033e-03	ci right 2.007543e-03	k: 2018	n:1050000
Cons ci ratio: 4.674095e-03	ci left: 4.002109e-01	ci right 4.020868e-01	k: 421206	n:1050000
KS ci ratio: 1.381088e-01	ci left: 7.137121e-04	ci right 8.205014e-04	k: 804	n:1050000
NAALAD2   1050000 perm   715 sec   (1469 perm/sec)   p_kst 7.657143e-04   p_cons 4.011486e-01   p_joint 1.921905e-03

Joint ci ratio: 8.664286e-02	ci left: 1.843833e-03	ci right 2.011737e-03	k: 2042	n:1060000
Cons ci ratio: 4.652192e-03	ci left: 4.001951e-01	ci right 4.020621e-01	k: 425196	n:1060000
KS ci ratio: 1.374276e-01	ci left: 7.142660e-04	ci right 8.205680e-04	k: 812	n:1060000
NAALAD2   1060000 perm   726 sec   (1461 perm/sec)   p_kst 7.660377e-04   p_cons 4.011283e-01   p_joint 1.926415e-03

Joint ci ratio: 8.624276e-02	ci left: 1.843974e-03	ci right 2.011077e-03	k: 2061	n:1070000
Cons ci ratio: 4.630269e-03	ci left: 4.002132e-01	ci right 4.020715e-01	k: 429222	n:1070000
KS ci ratio: 1.366731e-01	ci left: 7.157135e-04	ci right 8.215985e-04	k: 821	n:1070000
NAALAD2   1070000 perm   737 sec   (1452 perm/sec)   p_kst 7.672897e-04   p_cons 4.011421e-01   p_joint 1.926168e-03

Joint ci ratio: 8.607640e-02	ci left: 1.834148e-03	ci right 2.000023e-03	k: 2069	n:1080000
Cons ci ratio: 4.608378e-03	ci left: 4.002597e-01	ci right 4.021094e-01	k: 433279	n:1080000
KS ci ratio: 1.358491e-01	ci left: 7.180302e-04	ci right 8.235658e-04	k: 831	n:1080000
NAALAD2   1080000 perm   749 sec   (1443 perm/sec)   p_kst 7.694444e-04   p_cons 4.011843e-01   p_joint 1.915741e-03

Joint ci ratio: 8.552016e-02	ci left: 1.841560e-03	ci right 2.006976e-03	k: 2096	n:1090000
Cons ci ratio: 4.587837e-03	ci left: 4.001962e-01	ci right 4.020373e-01	k: 437217	n:1090000
KS ci ratio: 1.346404e-01	ci left: 7.247388e-04	ci right 8.302367e-04	k: 846	n:1090000
NAALAD2   1090000 perm   760 sec   (1434 perm/sec)   p_kst 7.761468e-04   p_cons 4.011165e-01   p_joint 1.922936e-03

Joint ci ratio: 8.507495e-02	ci left: 1.844392e-03	ci right 2.009157e-03	k: 2118	n:1100000
Cons ci ratio: 4.566721e-03	ci left: 4.002230e-01	ci right 4.020557e-01	k: 441253	n:1100000
KS ci ratio: 1.336964e-01	ci left: 7.286933e-04	ci right 8.339640e-04	k: 858	n:1100000
NAALAD2   1100000 perm   772 sec   (1425 perm/sec)   p_kst 7.800000e-04   p_cons 4.011391e-01   p_joint 1.925455e-03

Joint ci ratio: 8.513609e-02	ci left: 1.825130e-03	ci right 1.988297e-03	k: 2115	n:1110000
Cons ci ratio: 4.546354e-03	ci left: 4.002006e-01	ci right 4.020251e-01	k: 445235	n:1110000
KS ci ratio: 1.326957e-01	ci left: 7.334500e-04	ci right 8.385524e-04	k: 871	n:1110000
NAALAD2   1110000 perm   784 sec   (1416 perm/sec)   p_kst 7.846847e-04   p_cons 4.011126e-01   p_joint 1.905405e-03

Joint ci ratio: 8.481614e-02	ci left: 1.822816e-03	ci right 1.985134e-03	k: 2131	n:1120000
Cons ci ratio: 4.525904e-03	ci left: 4.002162e-01	ci right 4.020325e-01	k: 449259	n:1120000
KS ci ratio: 1.323171e-01	ci left: 7.312176e-04	ci right 8.356776e-04	k: 876	n:1120000
NAALAD2   1120000 perm   796 sec   (1407 perm/sec)   p_kst 7.821429e-04   p_cons 4.011241e-01   p_joint 1.902679e-03

Joint ci ratio: 8.542111e-02	ci left: 1.780700e-03	ci right 1.940455e-03	k: 2101	n:1130000
Cons ci ratio: 4.506176e-03	ci left: 4.001838e-01	ci right 4.019920e-01	k: 453229	n:1130000
KS ci ratio: 1.317177e-01	ci left: 7.315925e-04	ci right 8.355956e-04	k: 884	n:1130000
NAALAD2   1130000 perm   808 sec   (1399 perm/sec)   p_kst 7.823009e-04   p_cons 4.010876e-01   p_joint 1.859292e-03

Joint ci ratio: 8.505772e-02	ci left: 1.780533e-03	ci right 1.939559e-03	k: 2119	n:1140000
Cons ci ratio: 4.487056e-03	ci left: 4.001142e-01	ci right 4.019144e-01	k: 457156	n:1140000
KS ci ratio: 1.311264e-01	ci left: 7.319619e-04	ci right 8.355139e-04	k: 892	n:1140000
NAALAD2   1140000 perm   820 sec   (1391 perm/sec)   p_kst 7.824561e-04   p_cons 4.010140e-01   p_joint 1.858772e-03

Joint ci ratio: 8.131996e-02	ci left: 1.934501e-03	ci right 2.099327e-03	k: 2318	n:1150000
Cons ci ratio: 4.467885e-03	ci left: 4.000771e-01	ci right 4.018695e-01	k: 461119	n:1150000
KS ci ratio: 1.306155e-01	ci left: 7.314847e-04	ci right 8.345347e-04	k: 899	n:1150000
NAALAD2   1150000 perm   832 sec   (1383 perm/sec)   p_kst 7.817391e-04   p_cons 4.009730e-01   p_joint 2.015652e-03

Joint ci ratio: 8.100626e-02	ci left: 1.933027e-03	ci right 2.097062e-03	k: 2336	n:1160000
Cons ci ratio: 4.448120e-03	ci left: 4.001312e-01	ci right 4.019158e-01	k: 465187	n:1160000
KS ci ratio: 1.298957e-01	ci left: 7.335186e-04	ci right 8.362418e-04	k: 909	n:1160000
NAALAD2   1160000 perm   844 sec   (1375 perm/sec)   p_kst 7.836207e-04   p_cons 4.010233e-01   p_joint 2.013793e-03

Joint ci ratio: 8.067901e-02	ci left: 1.932416e-03	ci right 2.095706e-03	k: 2355	n:1170000
Cons ci ratio: 4.429128e-03	ci left: 4.001288e-01	ci right 4.019058e-01	k: 469190	n:1170000
KS ci ratio: 1.291877e-01	ci left: 7.355193e-04	ci right 8.379182e-04	k: 919	n:1170000
NAALAD2   1170000 perm   856 sec   (1367 perm/sec)   p_kst 7.854701e-04   p_cons 4.010171e-01   p_joint 2.012821e-03

Joint ci ratio: 8.040658e-02	ci left: 1.929326e-03	ci right 2.091778e-03	k: 2371	n:1180000
Cons ci ratio: 4.410438e-03	ci left: 4.001198e-01	ci right 4.018892e-01	k: 473185	n:1180000
KS ci ratio: 1.286296e-01	ci left: 7.358471e-04	ci right 8.378154e-04	k: 927	n:1180000
NAALAD2   1180000 perm   868 sec   (1360 perm/sec)   p_kst 7.855932e-04   p_cons 4.010042e-01   p_joint 2.009322e-03

Joint ci ratio: 8.006973e-02	ci left: 1.929583e-03	ci right 2.091344e-03	k: 2391	n:1190000
Cons ci ratio: 4.391891e-03	ci left: 4.001209e-01	ci right 4.018829e-01	k: 477192	n:1190000
KS ci ratio: 1.283535e-01	ci left: 7.329167e-04	ci right 8.342444e-04	k: 931	n:1190000
NAALAD2   1190000 perm   880 sec   (1352 perm/sec)   p_kst 7.823529e-04   p_cons 4.010017e-01   p_joint 2.009244e-03

Joint ci ratio: 8.076696e-02	ci left: 1.880021e-03	ci right 2.039065e-03	k: 2350	n:1200000
Cons ci ratio: 4.373083e-03	ci left: 4.001763e-01	ci right 4.019309e-01	k: 481264	n:1200000
KS ci ratio: 1.280792e-01	ci left: 7.300355e-04	ci right 8.307326e-04	k: 935	n:1200000
NAALAD2   1200000 perm   892 sec   (1345 perm/sec)   p_kst 7.791667e-04   p_cons 4.010533e-01   p_joint 1.958333e-03

Joint ci ratio: 8.039161e-02	ci left: 1.882299e-03	ci right 2.040761e-03	k: 2372	n:1210000
Cons ci ratio: 4.354942e-03	ci left: 4.001836e-01	ci right 4.019309e-01	k: 485279	n:1210000
KS ci ratio: 1.275353e-01	ci left: 7.304023e-04	ci right 8.306899e-04	k: 943	n:1210000
NAALAD2   1210000 perm   905 sec   (1337 perm/sec)   p_kst 7.793388e-04   p_cons 4.010570e-01   p_joint 1.960331e-03

Joint ci ratio: 8.005495e-02	ci left: 1.882935e-03	ci right 2.040756e-03	k: 2392	n:1220000
Cons ci ratio: 4.336773e-03	ci left: 4.002187e-01	ci right 4.019589e-01	k: 489328	n:1220000
KS ci ratio: 1.269316e-01	ci left: 7.315577e-04	ci right 8.314926e-04	k: 952	n:1220000
NAALAD2   1220000 perm   917 sec   (1330 perm/sec)   p_kst 7.803279e-04   p_cons 4.010885e-01   p_joint 1.960656e-03

Joint ci ratio: 7.978877e-02	ci left: 1.880375e-03	ci right 2.037432e-03	k: 2408	n:1230000
Cons ci ratio: 4.319063e-03	ci left: 4.002272e-01	ci right 4.019603e-01	k: 493345	n:1230000
KS ci ratio: 1.264022e-01	ci left: 7.319080e-04	ci right 8.314426e-04	k: 960	n:1230000
NAALAD2   1230000 perm   930 sec   (1323 perm/sec)   p_kst 7.804878e-04   p_cons 4.010935e-01   p_joint 1.957724e-03

Joint ci ratio: 7.952523e-02	ci left: 1.877857e-03	ci right 2.034162e-03	k: 2424	n:1240000
Cons ci ratio: 4.301453e-03	ci left: 4.002485e-01	ci right 4.019746e-01	k: 497378	n:1240000
KS ci ratio: 1.262056e-01	ci left: 7.283484e-04	ci right 8.272332e-04	k: 963	n:1240000
NAALAD2   1240000 perm   943 sec   (1315 perm/sec)   p_kst 7.766129e-04   p_cons 4.011113e-01   p_joint 1.954839e-03

Joint ci ratio: 7.921553e-02	ci left: 1.877732e-03	ci right 2.033390e-03	k: 2443	n:1250000
Cons ci ratio: 4.284285e-03	ci left: 4.002438e-01	ci right 4.019630e-01	k: 501379	n:1250000
KS ci ratio: 1.256851e-01	ci left: 7.287200e-04	ci right 8.272169e-04	k: 971	n:1250000
NAALAD2   1250000 perm   956 sec   (1308 perm/sec)   p_kst 7.768000e-04   p_cons 4.011032e-01   p_joint 1.954400e-03

Joint ci ratio: 7.903813e-02	ci left: 1.871387e-03	ci right 2.026155e-03	k: 2454	n:1260000
Cons ci ratio: 4.267123e-03	ci left: 4.002615e-01	ci right 4.019739e-01	k: 505408	n:1260000
KS ci ratio: 1.252991e-01	ci left: 7.275489e-04	ci right 8.255630e-04	k: 977	n:1260000
NAALAD2   1260000 perm   969 sec   (1301 perm/sec)   p_kst 7.753968e-04   p_cons 4.011175e-01   p_joint 1.947619e-03

Joint ci ratio: 7.871812e-02	ci left: 1.872089e-03	ci right 2.026260e-03	k: 2474	n:1270000
Cons ci ratio: 4.250452e-03	ci left: 4.002466e-01	ci right 4.019522e-01	k: 509396	n:1270000
KS ci ratio: 1.248531e-01	ci left: 7.271595e-04	ci right 8.247467e-04	k: 984	n:1270000
NAALAD2   1270000 perm   982 sec   (1293 perm/sec)   p_kst 7.748031e-04   p_cons 4.010992e-01   p_joint 1.948031e-03

Joint ci ratio: 7.849659e-02	ci left: 1.868185e-03	ci right 2.021582e-03	k: 2488	n:1280000
Cons ci ratio: 4.234002e-03	ci left: 4.002289e-01	ci right 4.019278e-01	k: 513380	n:1280000
KS ci ratio: 1.246005e-01	ci left: 7.245060e-04	ci right 8.215259e-04	k: 988	n:1280000
NAALAD2   1280000 perm   995 sec   (1286 perm/sec)   p_kst 7.718750e-04   p_cons 4.010781e-01   p_joint 1.943750e-03

Joint ci ratio: 7.966001e-02	ci left: 1.798991e-03	ci right 1.948997e-03	k: 2416	n:1290000
Cons ci ratio: 4.217421e-03	ci left: 4.002479e-01	ci right 4.019402e-01	k: 517411	n:1290000
KS ci ratio: 1.242869e-01	ci left: 7.226449e-04	ci right 8.191541e-04	k: 993	n:1290000
NAALAD2   1290000 perm   1008 sec   (1279 perm/sec)   p_kst 7.697674e-04   p_cons 4.010938e-01   p_joint 1.872868e-03

Joint ci ratio: 7.934873e-02	ci left: 1.799477e-03	ci right 1.948910e-03	k: 2435	n:1300000
Cons ci ratio: 4.201364e-03	ci left: 4.002289e-01	ci right 4.019147e-01	k: 521393	n:1300000
KS ci ratio: 1.236663e-01	ci left: 7.245399e-04	ci right 8.207836e-04	k: 1003	n:1300000
NAALAD2   1300000 perm   1021 sec   (1273 perm/sec)   p_kst 7.715385e-04   p_cons 4.010715e-01   p_joint 1.873077e-03

Joint ci ratio: 7.897664e-02	ci left: 1.802950e-03	ci right 1.951938e-03	k: 2458	n:1310000
Cons ci ratio: 4.185695e-03	ci left: 4.001865e-01	ci right 4.018658e-01	k: 525344	n:1310000
KS ci ratio: 1.230549e-01	ci left: 7.264072e-04	ci right 8.223871e-04	k: 1013	n:1310000
NAALAD2   1310000 perm   1035 sec   (1266 perm/sec)   p_kst 7.732824e-04   p_cons 4.010260e-01   p_joint 1.876336e-03

Joint ci ratio: 7.868918e-02	ci left: 1.802659e-03	ci right 1.951055e-03	k: 2476	n:1320000
Cons ci ratio: 4.169391e-03	ci left: 4.002380e-01	ci right 4.019109e-01	k: 529418	n:1320000
KS ci ratio: 1.226925e-01	ci left: 7.253098e-04	ci right 8.208420e-04	k: 1019	n:1320000
NAALAD2   1320000 perm   1048 sec   (1259 perm/sec)   p_kst 7.719697e-04   p_cons 4.010742e-01   p_joint 1.875758e-03

Joint ci ratio: 7.842059e-02	ci left: 1.801636e-03	ci right 1.949419e-03	k: 2493	n:1330000
Cons ci ratio: 4.154413e-03	ci left: 4.001571e-01	ci right 4.018237e-01	k: 533317	n:1330000
KS ci ratio: 1.223930e-01	ci left: 7.235004e-04	ci right 8.185449e-04	k: 1024	n:1330000
NAALAD2   1330000 perm   1062 sec   (1252 perm/sec)   p_kst 7.699248e-04   p_cons 4.009902e-01   p_joint 1.874436e-03

Joint ci ratio: 7.823280e-02	ci left: 1.796971e-03	ci right 1.944002e-03	k: 2505	n:1340000
Cons ci ratio: 4.138618e-03	ci left: 4.001909e-01	ci right 4.018513e-01	k: 537368	n:1340000
KS ci ratio: 1.219772e-01	ci left: 7.231654e-04	ci right 8.178198e-04	k: 1031	n:1340000
NAALAD2   1340000 perm   1076 sec   (1245 perm/sec)   p_kst 7.694030e-04   p_cons 4.010209e-01   p_joint 1.869403e-03

Joint ci ratio: 7.671479e-02	ci left: 1.856301e-03	ci right 2.005108e-03	k: 2605	n:1350000
Cons ci ratio: 4.123161e-03	ci left: 4.002057e-01	ci right 4.018599e-01	k: 541394	n:1350000
KS ci ratio: 1.211579e-01	ci left: 7.278637e-04	ci right 8.224473e-04	k: 1045	n:1350000
NAALAD2   1350000 perm   1090 sec   (1239 perm/sec)   p_kst 7.740741e-04   p_cons 4.010326e-01   p_joint 1.929630e-03

Joint ci ratio: 7.648046e-02	ci left: 1.854191e-03	ci right 2.002355e-03	k: 2621	n:1360000
Cons ci ratio: 4.107864e-03	ci left: 4.002217e-01	ci right 4.018699e-01	k: 545422	n:1360000
KS ci ratio: 1.206400e-01	ci left: 7.289294e-04	ci right 8.232176e-04	k: 1054	n:1360000
NAALAD2   1360000 perm   1104 sec   (1232 perm/sec)   p_kst 7.750000e-04   p_cons 4.010456e-01   p_joint 1.927206e-03

Joint ci ratio: 6.892461e-02	ci left: 2.274272e-03	ci right 2.437332e-03	k: 3226	n:1370000
Cons ci ratio: 4.092735e-03	ci left: 4.002375e-01	ci right 4.018797e-01	k: 549450	n:1370000
KS ci ratio: 1.234842e-01	ci left: 6.896410e-04	ci right 7.811041e-04	k: 1006	n:1370000
NAALAD2   1370000 perm   1118 sec   (1226 perm/sec)   p_kst 7.343066e-04   p_cons 4.010584e-01   p_joint 2.354745e-03

Joint ci ratio: 6.859573e-02	ci left: 2.279870e-03	ci right 2.442520e-03	k: 3257	n:1380000
Cons ci ratio: 4.077754e-03	ci left: 4.002553e-01	ci right 4.018915e-01	k: 553481	n:1380000
KS ci ratio: 1.232399e-01	ci left: 6.874526e-04	ci right 7.784320e-04	k: 1010	n:1380000
NAALAD2   1380000 perm   1132 sec   (1219 perm/sec)   p_kst 7.318841e-04   p_cons 4.010732e-01   p_joint 2.360145e-03

Joint ci ratio: 6.834446e-02	ci left: 2.280438e-03	ci right 2.442510e-03	k: 3281	n:1390000
Cons ci ratio: 4.062747e-03	ci left: 4.002951e-01	ci right 4.019254e-01	k: 557543	n:1390000
KS ci ratio: 1.228154e-01	ci left: 6.873879e-04	ci right 7.780226e-04	k: 1017	n:1390000
NAALAD2   1390000 perm   1146 sec   (1213 perm/sec)   p_kst 7.316547e-04   p_cons 4.011101e-01   p_joint 2.360432e-03

Joint ci ratio: 6.807528e-02	ci left: 2.282404e-03	ci right 2.443951e-03	k: 3307	n:1400000
Cons ci ratio: 4.047718e-03	ci left: 4.003565e-01	ci right 4.019810e-01	k: 561636	n:1400000
KS ci ratio: 1.223357e-01	ci left: 6.880171e-04	ci right 7.783547e-04	k: 1025	n:1400000
NAALAD2   1400000 perm   1160 sec   (1207 perm/sec)   p_kst 7.321429e-04   p_cons 4.011686e-01   p_joint 2.362143e-03

Joint ci ratio: 6.807586e-02	ci left: 2.266216e-03	ci right 2.426619e-03	k: 3307	n:1410000
Cons ci ratio: 4.033451e-03	ci left: 4.003462e-01	ci right 4.019649e-01	k: 565629	n:1410000
KS ci ratio: 1.220980e-01	ci left: 6.858876e-04	ci right 7.757581e-04	k: 1029	n:1410000
NAALAD2   1410000 perm   1174 sec   (1201 perm/sec)   p_kst 7.297872e-04   p_cons 4.011553e-01   p_joint 2.345390e-03

Joint ci ratio: 6.826283e-02	ci left: 2.237796e-03	ci right 2.396639e-03	k: 3289	n:1420000
Cons ci ratio: 4.019291e-03	ci left: 4.003409e-01	ci right 4.019539e-01	k: 569629	n:1420000
KS ci ratio: 1.216852e-01	ci left: 6.858367e-04	ci right 7.753748e-04	k: 1036	n:1420000
NAALAD2   1420000 perm   1189 sec   (1195 perm/sec)   p_kst 7.295775e-04   p_cons 4.011472e-01   p_joint 2.316197e-03

Joint ci ratio: 6.977838e-02	ci left: 2.125243e-03	ci right 2.279582e-03	k: 3148	n:1430000
Cons ci ratio: 4.005210e-03	ci left: 4.003441e-01	ci right 4.019514e-01	k: 573641	n:1430000
KS ci ratio: 1.215683e-01	ci left: 6.823966e-04	ci right 7.713938e-04	k: 1038	n:1430000
NAALAD2   1430000 perm   1203 sec   (1189 perm/sec)   p_kst 7.258741e-04   p_cons 4.011476e-01   p_joint 2.201399e-03

Joint ci ratio: 6.957990e-02	ci left: 2.122766e-03	ci right 2.276469e-03	k: 3166	n:1440000
Cons ci ratio: 3.991553e-03	ci left: 4.003139e-01	ci right 4.019157e-01	k: 577605	n:1440000
KS ci ratio: 1.212188e-01	ci left: 6.816979e-04	ci right 7.703301e-04	k: 1044	n:1440000
NAALAD2   1440000 perm   1217 sec   (1183 perm/sec)   p_kst 7.250000e-04   p_cons 4.011146e-01   p_joint 2.198611e-03

Joint ci ratio: 6.921993e-02	ci left: 2.130491e-03	ci right 2.283922e-03	k: 3199	n:1450000
Cons ci ratio: 3.978046e-03	ci left: 4.002828e-01	ci right 4.018790e-01	k: 581567	n:1450000
KS ci ratio: 1.207575e-01	ci left: 6.823468e-04	ci right 7.707016e-04	k: 1052	n:1450000
NAALAD2   1450000 perm   1232 sec   (1177 perm/sec)   p_kst 7.255172e-04   p_cons 4.010807e-01   p_joint 2.206207e-03

Joint ci ratio: 6.665959e-02	ci left: 2.284229e-03	ci right 2.442413e-03	k: 3449	n:1460000
Cons ci ratio: 3.964743e-03	ci left: 4.002439e-01	ci right 4.018346e-01	k: 585517	n:1460000
KS ci ratio: 1.203013e-01	ci left: 6.829875e-04	ci right 7.710674e-04	k: 1060	n:1460000
NAALAD2   1460000 perm   1247 sec   (1171 perm/sec)   p_kst 7.260274e-04   p_cons 4.010390e-01   p_joint 2.362329e-03

Joint ci ratio: 6.663110e-02	ci left: 2.270696e-03	ci right 2.427873e-03	k: 3452	n:1470000
Cons ci ratio: 3.951192e-03	ci left: 4.002518e-01	ci right 4.018370e-01	k: 589535	n:1470000
KS ci ratio: 1.201318e-01	ci left: 6.803207e-04	ci right 7.679242e-04	k: 1063	n:1470000
NAALAD2   1470000 perm   1262 sec   (1165 perm/sec)   p_kst 7.231293e-04   p_cons 4.010442e-01   p_joint 2.348299e-03

Joint ci ratio: 6.664130e-02	ci left: 2.254689e-03	ci right 2.410783e-03	k: 3451	n:1480000
Cons ci ratio: 3.938299e-03	ci left: 4.001961e-01	ci right 4.017759e-01	k: 593459	n:1480000
KS ci ratio: 1.199067e-01	ci left: 6.783454e-04	ci right 7.655194e-04	k: 1067	n:1480000
NAALAD2   1480000 perm   1277 sec   (1159 perm/sec)   p_kst 7.209459e-04   p_cons 4.009858e-01   p_joint 2.331757e-03

Joint ci ratio: 6.644916e-02	ci left: 2.252756e-03	ci right 2.408249e-03	k: 3471	n:1490000
Cons ci ratio: 3.924770e-03	ci left: 4.002344e-01	ci right 4.018089e-01	k: 597522	n:1490000
KS ci ratio: 1.195714e-01	ci left: 6.776990e-04	ci right 7.645291e-04	k: 1073	n:1490000
NAALAD2   1490000 perm   1291 sec   (1154 perm/sec)   p_kst 7.201342e-04   p_cons 4.010215e-01   p_joint 2.329530e-03

Joint ci ratio: 6.310359e-02	ci left: 2.485012e-03	ci right 2.647585e-03	k: 3848	n:1500000
Cons ci ratio: 3.912041e-03	ci left: 4.001909e-01	ci right 4.017602e-01	k: 601463	n:1500000
KS ci ratio: 1.191836e-01	ci left: 6.777083e-04	ci right 7.642382e-04	k: 1080	n:1500000
NAALAD2   1500000 perm   1306 sec   (1148 perm/sec)   p_kst 7.200000e-04   p_cons 4.009753e-01   p_joint 2.565333e-03

Joint ci ratio: 6.287526e-02	ci left: 2.486806e-03	ci right 2.648886e-03	k: 3876	n:1510000
Cons ci ratio: 3.899269e-03	ci left: 4.001685e-01	ci right 4.017325e-01	k: 605435	n:1510000
KS ci ratio: 1.189090e-01	ci left: 6.764328e-04	ci right 7.625869e-04	k: 1085	n:1510000
NAALAD2   1510000 perm   1321 sec   (1143 perm/sec)   p_kst 7.185430e-04   p_cons 4.009503e-01   p_joint 2.566887e-03

Joint ci ratio: 6.464674e-02	ci left: 2.335131e-03	ci right 2.491774e-03	k: 3667	n:1520000
Cons ci ratio: 3.886344e-03	ci left: 4.001806e-01	ci right 4.017395e-01	k: 609459	n:1520000
KS ci ratio: 1.186908e-01	ci left: 6.745360e-04	ci right 7.602796e-04	k: 1089	n:1520000
NAALAD2   1520000 perm   1337 sec   (1137 perm/sec)   p_kst 7.164474e-04   p_cons 4.009599e-01   p_joint 2.412500e-03

Joint ci ratio: 6.439259e-02	ci left: 2.338517e-03	ci right 2.494748e-03	k: 3696	n:1530000
Cons ci ratio: 3.873394e-03	ci left: 4.002115e-01	ci right 4.017653e-01	k: 613512	n:1530000
KS ci ratio: 1.183115e-01	ci left: 6.745668e-04	ci right 7.600212e-04	k: 1096	n:1530000
NAALAD2   1530000 perm   1352 sec   (1132 perm/sec)   p_kst 7.163399e-04   p_cons 4.009882e-01   p_joint 2.415686e-03

Joint ci ratio: 6.495915e-02	ci left: 2.282444e-03	ci right 2.436320e-03	k: 3632	n:1540000
Cons ci ratio: 3.860865e-03	ci left: 4.002057e-01	ci right 4.017544e-01	k: 617509	n:1540000
KS ci ratio: 1.179358e-01	ci left: 6.745976e-04	ci right 7.597657e-04	k: 1103	n:1540000
NAALAD2   1540000 perm   1368 sec   (1126 perm/sec)   p_kst 7.162338e-04   p_cons 4.009799e-01   p_joint 2.358442e-03

Joint ci ratio: 6.491489e-02	ci left: 2.270891e-03	ci right 2.423881e-03	k: 3637	n:1550000
Cons ci ratio: 3.848648e-03	ci left: 4.001761e-01	ci right 4.017198e-01	k: 621469	n:1550000
KS ci ratio: 1.173525e-01	ci left: 6.771334e-04	ci right 7.621694e-04	k: 1114	n:1550000
NAALAD2   1550000 perm   1383 sec   (1121 perm/sec)   p_kst 7.187097e-04   p_cons 4.009477e-01   p_joint 2.346452e-03

Joint ci ratio: 6.469296e-02	ci left: 2.272100e-03	ci right 2.424628e-03	k: 3662	n:1560000
Cons ci ratio: 3.836689e-03	ci left: 4.001289e-01	ci right 4.016676e-01	k: 625401	n:1560000
KS ci ratio: 1.170380e-01	ci left: 6.765262e-04	ci right 7.612426e-04	k: 1120	n:1560000
NAALAD2   1560000 perm   1398 sec   (1116 perm/sec)   p_kst 7.179487e-04   p_cons 4.008981e-01   p_joint 2.347436e-03

Joint ci ratio: 6.518581e-02	ci left: 2.223163e-03	ci right 2.373586e-03	k: 3607	n:1570000
Cons ci ratio: 3.726724e-03	ci left: 4.126232e-01	ci right 4.141644e-01	k: 649028	n:1570000
KS ci ratio: 1.167261e-01	ci left: 6.759270e-04	ci right 7.603273e-04	k: 1126	n:1570000
NAALAD2   1570000 perm   1414 sec   (1110 perm/sec)   p_kst 7.171975e-04   p_cons 4.133936e-01   p_joint 2.297452e-03

Joint ci ratio: 6.489846e-02	ci left: 2.229017e-03	ci right 2.379146e-03	k: 3639	n:1580000
Cons ci ratio: 3.715062e-03	ci left: 4.126061e-01	ci right 4.141424e-01	k: 653131	n:1580000
KS ci ratio: 1.162116e-01	ci left: 6.777937e-04	ci right 7.620284e-04	k: 1136	n:1580000
NAALAD2   1580000 perm   1430 sec   (1105 perm/sec)   p_kst 7.189873e-04   p_cons 4.133741e-01   p_joint 2.303165e-03

Joint ci ratio: 6.468554e-02	ci left: 2.229848e-03	ci right 2.379522e-03	k: 3663	n:1590000
Cons ci ratio: 3.703374e-03	ci left: 4.126067e-01	ci right 4.141382e-01	k: 657262	n:1590000
KS ci ratio: 1.155526e-01	ci left: 6.814701e-04	ci right 7.656487e-04	k: 1149	n:1590000
NAALAD2   1590000 perm   1445 sec   (1100 perm/sec)   p_kst 7.226415e-04   p_cons 4.133723e-01   p_joint 2.303774e-03

Joint ci ratio: 6.451856e-02	ci left: 2.227594e-03	ci right 2.376716e-03	k: 3682	n:1600000
Cons ci ratio: 3.691782e-03	ci left: 4.126093e-01	ci right 4.141360e-01	k: 661396	n:1600000
KS ci ratio: 1.151528e-01	ci left: 6.820666e-04	ci right 7.660076e-04	k: 1157	n:1600000
NAALAD2   1600000 perm   1461 sec   (1095 perm/sec)   p_kst 7.231250e-04   p_cons 4.133725e-01   p_joint 2.301250e-03

Joint ci ratio: 6.429196e-02	ci left: 2.229647e-03	ci right 2.378363e-03	k: 3708	n:1610000
Cons ci ratio: 3.680236e-03	ci left: 4.126199e-01	ci right 4.141419e-01	k: 665543	n:1610000
KS ci ratio: 1.148063e-01	ci left: 6.820530e-04	ci right 7.657226e-04	k: 1164	n:1610000
NAALAD2   1610000 perm   1477 sec   (1090 perm/sec)   p_kst 7.229814e-04   p_cons 4.133807e-01   p_joint 2.303106e-03

Joint ci ratio: 6.543397e-02	ci left: 2.138150e-03	ci right 2.283392e-03	k: 3580	n:1620000
Cons ci ratio: 3.669391e-03	ci left: 4.125521e-01	ci right 4.140692e-01	k: 669563	n:1620000
KS ci ratio: 1.143653e-01	ci left: 6.832391e-04	ci right 7.667106e-04	k: 1173	n:1620000
NAALAD2   1620000 perm   1493 sec   (1085 perm/sec)   p_kst 7.240741e-04   p_cons 4.133105e-01   p_joint 2.209877e-03

Joint ci ratio: 6.519763e-02	ci left: 2.140723e-03	ci right 2.285595e-03	k: 3606	n:1630000
Cons ci ratio: 3.658017e-03	ci left: 4.125678e-01	ci right 4.140803e-01	k: 673718	n:1630000
KS ci ratio: 1.138332e-01	ci left: 6.856034e-04	ci right 7.689478e-04	k: 1184	n:1630000
NAALAD2   1630000 perm   1509 sec   (1080 perm/sec)   p_kst 7.263804e-04   p_cons 4.133239e-01   p_joint 2.212270e-03

Joint ci ratio: 6.499074e-02	ci left: 2.141466e-03	ci right 2.285911e-03	k: 3629	n:1640000
Cons ci ratio: 3.646573e-03	ci left: 4.126066e-01	ci right 4.141145e-01	k: 677911	n:1640000
KS ci ratio: 1.134508e-01	ci left: 6.861623e-04	ci right 7.692757e-04	k: 1192	n:1640000
NAALAD2   1640000 perm   1525 sec   (1075 perm/sec)   p_kst 7.268293e-04   p_cons 4.133604e-01   p_joint 2.212805e-03

Joint ci ratio: 6.481248e-02	ci left: 2.140412e-03	ci right 2.284375e-03	k: 3649	n:1650000
Cons ci ratio: 3.635168e-03	ci left: 4.126539e-01	ci right 4.141573e-01	k: 682119	n:1650000
KS ci ratio: 1.131667e-01	ci left: 6.855370e-04	ci right 7.683528e-04	k: 1198	n:1650000
NAALAD2   1650000 perm   1541 sec   (1071 perm/sec)   p_kst 7.260606e-04   p_cons 4.134055e-01   p_joint 2.211515e-03

Joint ci ratio: 6.467101e-02	ci left: 2.137000e-03	ci right 2.280408e-03	k: 3665	n:1660000
Cons ci ratio: 3.624288e-03	ci left: 4.126447e-01	ci right 4.141435e-01	k: 686234	n:1660000
KS ci ratio: 1.129315e-01	ci left: 6.843342e-04	ci right 7.668214e-04	k: 1203	n:1660000
NAALAD2   1660000 perm   1557 sec   (1066 perm/sec)   p_kst 7.246988e-04   p_cons 4.133940e-01   p_joint 2.207831e-03

Joint ci ratio: 6.478666e-02	ci left: 2.116544e-03	ci right 2.258843e-03	k: 3652	n:1670000
Cons ci ratio: 3.613273e-03	ci left: 4.126667e-01	ci right 4.141611e-01	k: 690401	n:1670000
KS ci ratio: 1.125582e-01	ci left: 6.848917e-04	ci right 7.671551e-04	k: 1211	n:1670000
NAALAD2   1670000 perm   1574 sec   (1061 perm/sec)   p_kst 7.251497e-04   p_cons 4.134138e-01   p_joint 2.186826e-03

Joint ci ratio: 6.459245e-02	ci left: 2.116829e-03	ci right 2.258705e-03	k: 3674	n:1680000
Cons ci ratio: 3.602562e-03	ci left: 4.126612e-01	ci right 4.141510e-01	k: 694522	n:1680000
KS ci ratio: 1.122806e-01	ci left: 6.842859e-04	ci right 7.662605e-04	k: 1217	n:1680000
NAALAD2   1680000 perm   1590 sec   (1056 perm/sec)   p_kst 7.244048e-04   p_cons 4.134060e-01   p_joint 2.186905e-03

Joint ci ratio: 6.432155e-02	ci left: 2.122352e-03	ci right 2.263978e-03	k: 3705	n:1690000
Cons ci ratio: 3.591647e-03	ci left: 4.126959e-01	ci right 4.141814e-01	k: 698711	n:1690000
KS ci ratio: 1.117314e-01	ci left: 6.871386e-04	ci right 7.690258e-04	k: 1229	n:1690000
NAALAD2   1690000 perm   1608 sec   (1051 perm/sec)   p_kst 7.272189e-04   p_cons 4.134385e-01   p_joint 2.192308e-03

Joint ci ratio: 6.448785e-02	ci left: 2.098870e-03	ci right 2.239305e-03	k: 3686	n:1700000
Cons ci ratio: 3.581047e-03	ci left: 4.127008e-01	ci right 4.141819e-01	k: 702850	n:1700000
KS ci ratio: 1.113248e-01	ci left: 6.882431e-04	ci right 7.699438e-04	k: 1238	n:1700000
NAALAD2   1700000 perm   1625 sec   (1046 perm/sec)   p_kst 7.282353e-04   p_cons 4.134412e-01   p_joint 2.168235e-03

Joint ci ratio: 6.440953e-02	ci left: 2.091774e-03	ci right 2.231558e-03	k: 3695	n:1710000
Cons ci ratio: 3.571045e-03	ci left: 4.126372e-01	ci right 4.141140e-01	k: 706872	n:1710000
KS ci ratio: 1.108338e-01	ci left: 6.904724e-04	ci right 7.720526e-04	k: 1249	n:1710000
NAALAD2   1710000 perm   1643 sec   (1041 perm/sec)   p_kst 7.304094e-04   p_cons 4.133754e-01   p_joint 2.160819e-03

Joint ci ratio: 6.471775e-02	ci left: 2.059591e-03	ci right 2.197908e-03	k: 3660	n:1720000
Cons ci ratio: 3.560426e-03	ci left: 4.126697e-01	ci right 4.141422e-01	k: 711058	n:1720000
KS ci ratio: 1.104369e-01	ci left: 6.915458e-04	ci right 7.729412e-04	k: 1258	n:1720000
NAALAD2   1720000 perm   1660 sec   (1036 perm/sec)   p_kst 7.313953e-04   p_cons 4.134058e-01   p_joint 2.127907e-03

Joint ci ratio: 6.461212e-02	ci left: 2.054510e-03	ci right 2.192252e-03	k: 3672	n:1730000
Cons ci ratio: 3.550371e-03	ci left: 4.126377e-01	ci right 4.141059e-01	k: 715133	n:1730000
KS ci ratio: 1.101311e-01	ci left: 6.914830e-04	ci right 7.726311e-04	k: 1265	n:1730000
NAALAD2   1730000 perm   1676 sec   (1032 perm/sec)   p_kst 7.312139e-04   p_cons 4.133717e-01   p_joint 2.122543e-03

Joint ci ratio: 6.438455e-02	ci left: 2.057404e-03	ci right 2.194836e-03	k: 3698	n:1740000
Cons ci ratio: 3.540014e-03	ci left: 4.126590e-01	ci right 4.141229e-01	k: 719300	n:1740000
KS ci ratio: 1.098279e-01	ci left: 6.914213e-04	ci right 7.723243e-04	k: 1272	n:1740000
NAALAD2   1740000 perm   1693 sec   (1028 perm/sec)   p_kst 7.310345e-04   p_cons 4.133908e-01   p_joint 2.125287e-03

Joint ci ratio: 6.452494e-02	ci left: 2.036651e-03	ci right 2.173005e-03	k: 3682	n:1750000
Cons ci ratio: 3.530068e-03	ci left: 4.126360e-01	ci right 4.140957e-01	k: 723390	n:1750000
KS ci ratio: 1.095272e-01	ci left: 6.913606e-04	ci right 7.720207e-04	k: 1279	n:1750000
NAALAD2   1750000 perm   1710 sec   (1023 perm/sec)   p_kst 7.308571e-04   p_cons 4.133657e-01   p_joint 2.104000e-03

Joint ci ratio: 6.436789e-02	ci left: 2.035142e-03	ci right 2.171050e-03	k: 3700	n:1760000
Cons ci ratio: 3.519793e-03	ci left: 4.126701e-01	ci right 4.141257e-01	k: 727580	n:1760000
KS ci ratio: 1.093566e-01	ci left: 6.896429e-04	ci right 7.699692e-04	k: 1283	n:1760000
NAALAD2   1760000 perm   1727 sec   (1019 perm/sec)   p_kst 7.289773e-04   p_cons 4.133977e-01   p_joint 2.102273e-03

Joint ci ratio: 6.422930e-02	ci left: 2.032538e-03	ci right 2.167970e-03	k: 3716	n:1770000
Cons ci ratio: 3.509958e-03	ci left: 4.126552e-01	ci right 4.141067e-01	k: 731684	n:1770000
KS ci ratio: 1.092292e-01	ci left: 6.873952e-04	ci right 7.673604e-04	k: 1286	n:1770000
NAALAD2   1770000 perm   1744 sec   (1015 perm/sec)   p_kst 7.265537e-04   p_cons 4.133808e-01   p_joint 2.099435e-03

Joint ci ratio: 6.464933e-02	ci left: 1.994586e-03	ci right 2.128391e-03	k: 3668	n:1780000
Cons ci ratio: 3.500348e-03	ci left: 4.126208e-01	ci right 4.140682e-01	k: 735753	n:1780000
KS ci ratio: 1.086815e-01	ci left: 6.906378e-04	ci right 7.705516e-04	k: 1299	n:1780000
NAALAD2   1780000 perm   1762 sec   (1010 perm/sec)   p_kst 7.297753e-04   p_cons 4.133444e-01   p_joint 2.060674e-03

Joint ci ratio: 6.457919e-02	ci left: 1.987840e-03	ci right 2.121042e-03	k: 3676	n:1790000
Cons ci ratio: 3.490957e-03	ci left: 4.125673e-01	ci right 4.140106e-01	k: 739787	n:1790000
KS ci ratio: 1.083901e-01	ci left: 6.905839e-04	ci right 7.702636e-04	k: 1306	n:1790000
NAALAD2   1790000 perm   1779 sec   (1006 perm/sec)   p_kst 7.296089e-04   p_cons 4.132888e-01   p_joint 2.053631e-03

Joint ci ratio: 6.583848e-02	ci left: 1.900830e-03	ci right 2.030780e-03	k: 3537	n:1800000
Cons ci ratio: 3.481465e-03	ci left: 4.125388e-01	ci right 4.139781e-01	k: 743865	n:1800000
KS ci ratio: 1.081010e-01	ci left: 6.905310e-04	ci right 7.699785e-04	k: 1313	n:1800000
NAALAD2   1800000 perm   1797 sec   (1002 perm/sec)   p_kst 7.294444e-04   p_cons 4.132583e-01   p_joint 1.965000e-03

Joint ci ratio: 6.558855e-02	ci left: 1.905001e-03	ci right 2.034723e-03	k: 3564	n:1810000
Cons ci ratio: 3.471738e-03	ci left: 4.125543e-01	ci right 4.139896e-01	k: 748022	n:1810000
KS ci ratio: 1.077326e-01	ci left: 6.915541e-04	ci right 7.708310e-04	k: 1322	n:1810000
NAALAD2   1810000 perm   1815 sec   (997 perm/sec)   p_kst 7.303867e-04   p_cons 4.132718e-01   p_joint 1.969061e-03

Joint ci ratio: 6.536881e-02	ci left: 1.907505e-03	ci right 2.036945e-03	k: 3588	n:1820000
Cons ci ratio: 3.462174e-03	ci left: 4.125581e-01	ci right 4.139894e-01	k: 752158	n:1820000
KS ci ratio: 1.073277e-01	ci left: 6.931011e-04	ci right 7.722378e-04	k: 1332	n:1820000
NAALAD2   1820000 perm   1832 sec   (993 perm/sec)   p_kst 7.318681e-04   p_cons 4.132736e-01   p_joint 1.971429e-03

Joint ci ratio: 6.554323e-02	ci left: 1.886868e-03	ci right 2.015263e-03	k: 3569	n:1830000
Cons ci ratio: 3.452455e-03	ci left: 4.125946e-01	ci right 4.140221e-01	k: 756354	n:1830000
KS ci ratio: 1.072072e-01	ci left: 6.909090e-04	ci right 7.697013e-04	k: 1335	n:1830000
NAALAD2   1830000 perm   1851 sec   (989 perm/sec)   p_kst 7.295082e-04   p_cons 4.133082e-01   p_joint 1.950273e-03

Joint ci ratio: 6.538777e-02	ci left: 1.885701e-03	ci right 2.013701e-03	k: 3586	n:1840000
Cons ci ratio: 3.443108e-03	ci left: 4.125900e-01	ci right 4.140135e-01	k: 760475	n:1840000
KS ci ratio: 1.068877e-01	ci left: 6.913854e-04	ci right 7.699823e-04	k: 1343	n:1840000
NAALAD2   1840000 perm   1870 sec   (984 perm/sec)   p_kst 7.298913e-04   p_cons 4.133016e-01   p_joint 1.948913e-03

Joint ci ratio: 6.522435e-02	ci left: 1.885079e-03	ci right 2.012704e-03	k: 3604	n:1850000
Cons ci ratio: 3.433747e-03	ci left: 4.125978e-01	ci right 4.140176e-01	k: 764619	n:1850000
KS ci ratio: 1.066499e-01	ci left: 6.908049e-04	ci right 7.691501e-04	k: 1349	n:1850000
NAALAD2   1850000 perm   1888 sec   (980 perm/sec)   p_kst 7.291892e-04   p_cons 4.133076e-01   p_joint 1.948108e-03

Joint ci ratio: 6.508015e-02	ci left: 1.883406e-03	ci right 2.010626e-03	k: 3620	n:1860000
Cons ci ratio: 3.424376e-03	ci left: 4.126180e-01	ci right 4.140339e-01	k: 768786	n:1860000
KS ci ratio: 1.063745e-01	ci left: 6.907540e-04	ci right 7.688785e-04	k: 1356	n:1860000
NAALAD2   1860000 perm   1906 sec   (976 perm/sec)   p_kst 7.290323e-04   p_cons 4.133258e-01   p_joint 1.946237e-03

Joint ci ratio: 6.492796e-02	ci left: 1.882277e-03	ci right 2.009113e-03	k: 3637	n:1870000
Cons ci ratio: 3.415114e-03	ci left: 4.126331e-01	ci right 4.140452e-01	k: 772944	n:1870000
KS ci ratio: 1.062182e-01	ci left: 6.891423e-04	ci right 7.669628e-04	k: 1360	n:1870000
NAALAD2   1870000 perm   1924 sec   (972 perm/sec)   p_kst 7.272727e-04   p_cons 4.133390e-01   p_joint 1.944920e-03

Joint ci ratio: 6.477683e-02	ci left: 1.881161e-03	ci right 2.007615e-03	k: 3654	n:1880000
Cons ci ratio: 3.405685e-03	ci left: 4.126826e-01	ci right 4.140910e-01	k: 777167	n:1880000
KS ci ratio: 1.060237e-01	ci left: 6.880656e-04	ci right 7.656134e-04	k: 1365	n:1880000
NAALAD2   1880000 perm   1942 sec   (968 perm/sec)   p_kst 7.260638e-04   p_cons 4.133867e-01   p_joint 1.943617e-03

Joint ci ratio: 6.428560e-02	ci left: 1.900360e-03	ci right 2.027100e-03	k: 3710	n:1890000
Cons ci ratio: 3.530270e-03	ci left: 3.941115e-01	ci right 3.955058e-01	k: 746188	n:1890000
KS ci ratio: 1.057530e-01	ci left: 6.880307e-04	ci right 7.653643e-04	k: 1372	n:1890000
NAALAD2   1890000 perm   1961 sec   (964 perm/sec)   p_kst 7.259259e-04   p_cons 3.948085e-01   p_joint 1.962963e-03

Joint ci ratio: 6.420797e-02	ci left: 1.895019e-03	ci right 2.021244e-03	k: 3719	n:1900000
Cons ci ratio: 3.521018e-03	ci left: 3.941064e-01	ci right 3.954970e-01	k: 750123	n:1900000
KS ci ratio: 1.055228e-01	ci left: 6.874839e-04	ci right 7.645773e-04	k: 1378	n:1900000
NAALAD2   1900000 perm   1979 sec   (960 perm/sec)   p_kst 7.252632e-04   p_cons 3.948016e-01   p_joint 1.957368e-03

Joint ci ratio: 6.116183e-02	ci left: 2.080424e-03	ci right 2.212192e-03	k: 4098	n:1910000
Cons ci ratio: 3.511662e-03	ci left: 3.941255e-01	ci right 3.955125e-01	k: 754104	n:1910000
KS ci ratio: 1.052560e-01	ci left: 6.874528e-04	ci right 7.643358e-04	k: 1385	n:1910000
NAALAD2   1910000 perm   1997 sec   (956 perm/sec)   p_kst 7.251309e-04   p_cons 3.948188e-01   p_joint 2.145550e-03

Joint ci ratio: 6.129720e-02	ci left: 2.060356e-03	ci right 2.191153e-03	k: 4080	n:1920000
Cons ci ratio: 3.502300e-03	ci left: 3.941553e-01	ci right 3.955387e-01	k: 758106	n:1920000
KS ci ratio: 1.050289e-01	ci left: 6.869152e-04	ci right 7.635621e-04	k: 1391	n:1920000
NAALAD2   1920000 perm   2016 sec   (952 perm/sec)   p_kst 7.244792e-04   p_cons 3.948469e-01   p_joint 2.125000e-03

Joint ci ratio: 6.125994e-02	ci left: 2.052232e-03	ci right 2.182430e-03	k: 4085	n:1930000
Cons ci ratio: 3.493118e-03	ci left: 3.941704e-01	ci right 3.955502e-01	k: 762080	n:1930000
KS ci ratio: 1.047284e-01	ci left: 6.873924e-04	ci right 7.638595e-04	k: 1399	n:1930000
NAALAD2   1930000 perm   2035 sec   (948 perm/sec)   p_kst 7.248705e-04   p_cons 3.948601e-01   p_joint 2.116580e-03

Joint ci ratio: 6.110312e-02	ci left: 2.052312e-03	ci right 2.182171e-03	k: 4106	n:1940000
Cons ci ratio: 3.484091e-03	ci left: 3.941739e-01	ci right 3.955501e-01	k: 766032	n:1940000
KS ci ratio: 1.043933e-01	ci left: 6.883670e-04	ci right 7.646825e-04	k: 1408	n:1940000
NAALAD2   1940000 perm   2054 sec   (945 perm/sec)   p_kst 7.257732e-04   p_cons 3.948619e-01   p_joint 2.116495e-03

Joint ci ratio: 6.090317e-02	ci left: 2.055423e-03	ci right 2.185037e-03	k: 4133	n:1950000
Cons ci ratio: 3.475293e-03	ci left: 3.941554e-01	ci right 3.955280e-01	k: 769941	n:1950000
KS ci ratio: 1.041718e-01	ci left: 6.878336e-04	ci right 7.639182e-04	k: 1414	n:1950000
NAALAD2   1950000 perm   2073 sec   (941 perm/sec)   p_kst 7.251282e-04   p_cons 3.948415e-01   p_joint 2.119487e-03

Joint ci ratio: 6.098486e-02	ci left: 2.039409e-03	ci right 2.168192e-03	k: 4122	n:1960000
Cons ci ratio: 3.466536e-03	ci left: 3.941406e-01	ci right 3.955097e-01	k: 773857	n:1960000
KS ci ratio: 1.040249e-01	ci left: 6.863119e-04	ci right 7.621147e-04	k: 1418	n:1960000
NAALAD2   1960000 perm   2091 sec   (937 perm/sec)   p_kst 7.234694e-04   p_cons 3.948250e-01   p_joint 2.103061e-03

Joint ci ratio: 6.085222e-02	ci left: 2.038054e-03	ci right 2.166462e-03	k: 4140	n:1970000
Cons ci ratio: 3.457717e-03	ci left: 3.941437e-01	ci right 3.955094e-01	k: 777808	n:1970000
KS ci ratio: 1.038422e-01	ci left: 6.853001e-04	ci right 7.608501e-04	k: 1423	n:1970000
NAALAD2   1970000 perm   2111 sec   (933 perm/sec)   p_kst 7.223350e-04   p_cons 3.948264e-01   p_joint 2.101523e-03

Joint ci ratio: 6.066930e-02	ci left: 2.040195e-03	ci right 2.168338e-03	k: 4165	n:1980000
Cons ci ratio: 3.448724e-03	ci left: 3.941801e-01	ci right 3.955424e-01	k: 781825	n:1980000
KS ci ratio: 1.036604e-01	ci left: 6.842987e-04	ci right 7.595982e-04	k: 1428	n:1980000
NAALAD2   1980000 perm   2129 sec   (930 perm/sec)   p_kst 7.212121e-04   p_cons 3.948611e-01   p_joint 2.103535e-03

Joint ci ratio: 6.056772e-02	ci left: 2.036872e-03	ci right 2.164584e-03	k: 4179	n:1990000
Cons ci ratio: 3.440003e-03	ci left: 3.941881e-01	ci right 3.955469e-01	k: 785786	n:1990000
KS ci ratio: 1.035519e-01	ci left: 6.823285e-04	ci right 7.573278e-04	k: 1431	n:1990000
NAALAD2   1990000 perm   2148 sec   (926 perm/sec)   p_kst 7.190955e-04   p_cons 3.948673e-01   p_joint 2.100000e-03

Joint ci ratio: 6.040894e-02	ci left: 2.037521e-03	ci right 2.164928e-03	k: 4201	n:2000000
Cons ci ratio: 3.431222e-03	ci left: 3.942134e-01	ci right 3.955689e-01	k: 789782	n:2000000
KS ci ratio: 1.033717e-01	ci left: 6.813521e-04	ci right 7.561058e-04	k: 1436	n:2000000
NAALAD2   2000000 perm   2168 sec   (922 perm/sec)   p_kst 7.180000e-04   p_cons 3.948910e-01   p_joint 2.100500e-03

Joint ci ratio: 6.022998e-02	ci left: 2.039634e-03	ci right 2.166782e-03	k: 4226	n:2010000
Cons ci ratio: 3.422690e-03	ci left: 3.942132e-01	ci right 3.955652e-01	k: 793727	n:2010000
KS ci ratio: 1.028361e-01	ci left: 6.852326e-04	ci right 7.599991e-04	k: 1451	n:2010000
NAALAD2   2010000 perm   2189 sec   (918 perm/sec)   p_kst 7.218905e-04   p_cons 3.948891e-01   p_joint 2.102488e-03

Joint ci ratio: 6.009510e-02	ci left: 2.038802e-03	ci right 2.165603e-03	k: 4245	n:2020000
Cons ci ratio: 3.414214e-03	ci left: 3.942139e-01	ci right 3.955626e-01	k: 797674	n:2020000
KS ci ratio: 1.026596e-01	ci left: 6.842520e-04	ci right 7.587756e-04	k: 1456	n:2020000
NAALAD2   2020000 perm   2208 sec   (915 perm/sec)   p_kst 7.207921e-04   p_cons 3.948881e-01   p_joint 2.101485e-03

Joint ci ratio: 5.989782e-02	ci left: 2.042345e-03	ci right 2.168935e-03	k: 4273	n:2030000
Cons ci ratio: 3.405748e-03	ci left: 3.942220e-01	ci right 3.955674e-01	k: 801636	n:2030000
KS ci ratio: 1.023789e-01	ci left: 6.847212e-04	ci right 7.590796e-04	k: 1464	n:2030000
NAALAD2   2030000 perm   2227 sec   (911 perm/sec)   p_kst 7.211823e-04   p_cons 3.948946e-01   p_joint 2.104926e-03

Joint ci ratio: 6.017388e-02	ci left: 2.013501e-03	ci right 2.138899e-03	k: 4234	n:2040000
Cons ci ratio: 3.397582e-03	ci left: 3.941968e-01	ci right 3.955388e-01	k: 805530	n:2040000
KS ci ratio: 1.021699e-01	ci left: 6.842306e-04	ci right 7.583750e-04	k: 1470	n:2040000
NAALAD2   2040000 perm   2247 sec   (908 perm/sec)   p_kst 7.205882e-04   p_cons 3.948676e-01   p_joint 2.075490e-03

Joint ci ratio: 6.000405e-02	ci left: 2.015211e-03	ci right 2.140349e-03	k: 4258	n:2050000
Cons ci ratio: 3.389388e-03	ci left: 3.941839e-01	ci right 3.955227e-01	k: 809449	n:2050000
KS ci ratio: 1.017899e-01	ci left: 6.861219e-04	ci right 7.601783e-04	k: 1481	n:2050000
NAALAD2   2050000 perm   2266 sec   (905 perm/sec)   p_kst 7.224390e-04   p_cons 3.948532e-01   p_joint 2.077073e-03

Joint ci ratio: 5.999024e-02	ci left: 2.006384e-03	ci right 2.130944e-03	k: 4260	n:2060000
Cons ci ratio: 3.381157e-03	ci left: 3.941848e-01	ci right 3.955203e-01	k: 813396	n:2060000
KS ci ratio: 1.015163e-01	ci left: 6.865760e-04	ci right 7.604703e-04	k: 1489	n:2060000
NAALAD2   2060000 perm   2286 sec   (901 perm/sec)   p_kst 7.228155e-04   p_cons 3.948524e-01   p_joint 2.067961e-03

Joint ci ratio: 6.013212e-02	ci left: 1.987174e-03	ci right 2.110844e-03	k: 4240	n:2070000
Cons ci ratio: 3.373070e-03	ci left: 3.941736e-01	ci right 3.955059e-01	k: 817318	n:2070000
KS ci ratio: 1.013125e-01	ci left: 6.860843e-04	ci right 7.597686e-04	k: 1495	n:2070000
NAALAD2   2070000 perm   2306 sec   (898 perm/sec)   p_kst 7.222222e-04   p_cons 3.948396e-01   p_joint 2.048309e-03

Joint ci ratio: 6.041859e-02	ci left: 1.958679e-03	ci right 2.081176e-03	k: 4200	n:2080000
Cons ci ratio: 3.365211e-03	ci left: 3.941385e-01	ci right 3.954676e-01	k: 821190	n:2080000
KS ci ratio: 1.011100e-01	ci left: 6.855974e-04	ci right 7.590734e-04	k: 1501	n:2080000
NAALAD2   2080000 perm   2326 sec   (894 perm/sec)   p_kst 7.216346e-04   p_cons 3.948029e-01   p_joint 2.019231e-03

Joint ci ratio: 6.031109e-02	ci left: 1.956376e-03	ci right 2.078503e-03	k: 4215	n:2090000
Cons ci ratio: 3.357150e-03	ci left: 3.941401e-01	ci right 3.954660e-01	k: 825138	n:2090000
KS ci ratio: 1.009087e-01	ci left: 6.851153e-04	ci right 7.583848e-04	k: 1507	n:2090000
NAALAD2   2090000 perm   2345 sec   (891 perm/sec)   p_kst 7.210526e-04   p_cons 3.948029e-01   p_joint 2.016746e-03

Joint ci ratio: 6.014010e-02	ci left: 1.958316e-03	ci right 2.080206e-03	k: 4239	n:2100000
Cons ci ratio: 3.348924e-03	ci left: 3.941735e-01	ci right 3.954963e-01	k: 829153	n:2100000
KS ci ratio: 1.006421e-01	ci left: 6.855663e-04	ci right 7.586790e-04	k: 1515	n:2100000
NAALAD2   2100000 perm   2366 sec   (888 perm/sec)   p_kst 7.214286e-04   p_cons 3.948348e-01   p_joint 2.018571e-03

Joint ci ratio: 6.019020e-02	ci left: 1.945767e-03	ci right 2.066980e-03	k: 4232	n:2110000
Cons ci ratio: 3.341083e-03	ci left: 3.941603e-01	ci right 3.954798e-01	k: 833070	n:2110000
KS ci ratio: 1.003775e-01	ci left: 6.860134e-04	ci right 7.589701e-04	k: 1523	n:2110000
NAALAD2   2110000 perm   2386 sec   (884 perm/sec)   p_kst 7.218009e-04   p_cons 3.948199e-01   p_joint 2.005687e-03

Joint ci ratio: 6.012647e-02	ci left: 1.940770e-03	ci right 2.061540e-03	k: 4241	n:2120000
Cons ci ratio: 3.332938e-03	ci left: 3.941985e-01	ci right 3.955150e-01	k: 837096	n:2120000
KS ci ratio: 1.001151e-01	ci left: 6.864565e-04	ci right 7.592582e-04	k: 1531	n:2120000
NAALAD2   2120000 perm   2406 sec   (881 perm/sec)   p_kst 7.221698e-04   p_cons 3.948566e-01   p_joint 2.000472e-03

Joint ci ratio: 5.915652e-02	ci left: 1.996408e-03	ci right 2.118567e-03	k: 4381	n:2130000
Cons ci ratio: 3.325280e-03	ci left: 3.941749e-01	ci right 3.954883e-01	k: 840991	n:2130000
KS ci ratio: 9.982228e-02	ci left: 6.873534e-04	ci right 7.600245e-04	k: 1540	n:2130000
NAALAD2   2130000 perm   2427 sec   (878 perm/sec)   p_kst 7.230047e-04   p_cons 3.948315e-01   p_joint 2.056808e-03

Outputting figure to mutsig2_images.part000000000111/NAALAD2.13_2299_2130000_0.000723_0.39483_0.0020568.png
                gene_name: NAALAD2
               theta_stop: 0.100 
                    nperm: 2130000 
                     p_ks: 0.00072 
        ci_ks_bounds_left: 0.00069 
       ci_ks_bounds_right: 0.00076 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0021 

Current progress: 14 percent done.
MYO9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
KS ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
MYO9A   10000 perm   3 sec   (3060 perm/sec)   p_kst 8.380000e-02   p_cons 4.071000e-01   p_joint 1.339000e-01

Joint ci ratio: 7.086189e-02	ci left: 1.279777e-01	ci right 1.374294e-01	k: 2653	n:20000
Cons ci ratio: 3.344109e-02	ci left: 4.003798e-01	ci right 4.140472e-01	k: 8144	n:20000
KS ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
MYO9A   20000 perm   7 sec   (2850 perm/sec)   p_kst 8.610000e-02   p_cons 4.072000e-01   p_joint 1.326500e-01

Outputting figure to mutsig2_images.part000000000111/MYO9A.12_7811_20000_0.0861_0.4072_0.13265.png
                gene_name: MYO9A
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
MYOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
Cons ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
KS ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
MYOF   10000 perm   3 sec   (3205 perm/sec)   p_kst 8.240000e-01   p_cons 8.748000e-01   p_joint 8.998000e-01

Outputting figure to mutsig2_images.part000000000111/MYOF.12_6402_10000_0.824_0.8748_0.8998.png
                gene_name: MYOF
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 17 percent done.
MYO1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.132144e-02	ci left: 7.633448e-01	ci right 7.798966e-01	k: 7717	n:10000
KS ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
MYO1A   10000 perm   2 sec   (4327 perm/sec)   p_kst 8.002000e-01   p_cons 7.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO1A.11_3240_10000_0.8002_0.7717_1.png
                gene_name: MYO1A
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
MYO5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.632113e-02	ci left: 2.502371e-01	ci right 2.675036e-01	k: 2588	n:10000
Cons ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
KS ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
MYO5B   10000 perm   3 sec   (3757 perm/sec)   p_kst 2.359000e-01   p_cons 2.694000e-01   p_joint 2.588000e-01

Outputting figure to mutsig2_images.part000000000111/MYO5B.11_5707_10000_0.2359_0.2694_0.2588.png
                gene_name: MYO5B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 21 percent done.
MYO1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
Cons ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
KS ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
MYO1B   10000 perm   2 sec   (4159 perm/sec)   p_kst 4.777000e-01   p_cons 9.640000e-02   p_joint 2.279000e-01

Joint ci ratio: 5.695357e-02	ci left: 1.860174e-01	ci right 1.969724e-01	k: 3829	n:20000
Cons ci ratio: 8.476450e-02	ci left: 9.249067e-02	ci right 1.007270e-01	k: 1931	n:20000
KS ci ratio: 2.961314e-02	ci left: 4.600159e-01	ci right 4.738937e-01	k: 9339	n:20000
MYO1B   20000 perm   5 sec   (3856 perm/sec)   p_kst 4.669500e-01   p_cons 9.655000e-02   p_joint 1.914500e-01

Outputting figure to mutsig2_images.part000000000111/MYO1B.10_3531_20000_0.46695_0.09655_0.19145.png
                gene_name: MYO1B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 22 percent done.
MYO1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
Cons ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
KS ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
MYO1D   10000 perm   2 sec   (4398 perm/sec)   p_kst 5.056000e-01   p_cons 1.269000e-01   p_joint 2.430000e-01

Joint ci ratio: 3.319987e-02	ci left: 4.038703e-01	ci right 4.175557e-01	k: 8214	n:20000
Cons ci ratio: 7.599955e-02	ci left: 1.129205e-01	ci right 1.218911e-01	k: 2347	n:20000
KS ci ratio: 2.737770e-02	ci left: 4.991955e-01	ci right 5.131027e-01	k: 10123	n:20000
MYO1D   20000 perm   5 sec   (4024 perm/sec)   p_kst 5.061500e-01   p_cons 1.173500e-01   p_joint 4.107000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1D.10_3109_20000_0.50615_0.11735_0.4107.png
                gene_name: MYO1D
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 24 percent done.
MYO3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
Cons ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
KS ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
MYO3B   10000 perm   2 sec   (4180 perm/sec)   p_kst 9.819000e-01   p_cons 1.982000e-01   p_joint 6.383000e-01

Outputting figure to mutsig2_images.part000000000111/MYO3B.10_4292_10000_0.9819_0.1982_0.6383.png
                gene_name: MYO3B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 25 percent done.
MYOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 2.235422e-02	ci left: 7.460424e-01	ci right 7.630091e-01	k: 7546	n:10000
MYOM3   10000 perm   2 sec   (4095 perm/sec)   p_kst 7.546000e-01   p_cons 2.400000e-03   p_joint 3.800000e-02

Joint ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
Cons ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
KS ci ratio: 1.644490e-02	ci left: 7.335087e-01	ci right 7.457215e-01	k: 14793	n:20000
MYOM3   20000 perm   5 sec   (3745 perm/sec)   p_kst 7.396500e-01   p_cons 2.500000e-03   p_joint 4.095000e-02

Joint ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
Cons ci ratio: 4.551208e-01	ci left: 1.907815e-03	ci right 3.058593e-03	k: 73	n:30000
KS ci ratio: 1.351965e-02	ci left: 7.319786e-01	ci right 7.419755e-01	k: 22110	n:30000
MYOM3   30000 perm   8 sec   (3601 perm/sec)   p_kst 7.370000e-01   p_cons 2.433333e-03   p_joint 2.333333e-02

Joint ci ratio: 1.543189e-01	ci left: 1.464879e-02	ci right 1.712221e-02	k: 634	n:40000
Cons ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
KS ci ratio: 1.170613e-02	ci left: 7.327313e-01	ci right 7.413843e-01	k: 29483	n:40000
MYOM3   40000 perm   11 sec   (3481 perm/sec)   p_kst 7.370750e-01   p_cons 2.625000e-03   p_joint 1.585000e-02

Joint ci ratio: 1.314307e-01	ci left: 1.633003e-02	ci right 1.864648e-02	k: 873	n:50000
Cons ci ratio: 3.473983e-01	ci left: 2.099648e-03	ci right 2.999660e-03	k: 126	n:50000
KS ci ratio: 1.046205e-02	ci left: 7.334991e-01	ci right 7.412333e-01	k: 36869	n:50000
MYOM3   50000 perm   15 sec   (3416 perm/sec)   p_kst 7.373800e-01   p_cons 2.520000e-03   p_joint 1.746000e-02

Joint ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
Cons ci ratio: 2.869801e-01	ci left: 2.655564e-03	ci right 3.560224e-03	k: 185	n:60000
KS ci ratio: 9.521665e-03	ci left: 7.350141e-01	ci right 7.420628e-01	k: 44313	n:60000
MYOM3   60000 perm   18 sec   (3362 perm/sec)   p_kst 7.385500e-01   p_cons 3.083333e-03   p_joint 1.941667e-02

Joint ci ratio: 1.178045e-01	ci left: 1.465335e-02	ci right 1.650140e-02	k: 1089	n:70000
Cons ci ratio: 2.767876e-01	ci left: 2.462028e-03	ci right 3.265775e-03	k: 199	n:70000
KS ci ratio: 8.807366e-03	ci left: 7.356292e-01	ci right 7.421510e-01	k: 51723	n:70000
MYOM3   70000 perm   21 sec   (3279 perm/sec)   p_kst 7.389000e-01   p_cons 2.842857e-03   p_joint 1.555714e-02

Joint ci ratio: 1.124032e-01	ci left: 1.413261e-02	ci right 1.582783e-02	k: 1197	n:80000
Cons ci ratio: 2.558818e-01	ci left: 2.550953e-03	ci right 3.310805e-03	k: 233	n:80000
KS ci ratio: 8.244145e-03	ci left: 7.355780e-01	ci right 7.416797e-01	k: 59091	n:80000
MYOM3   80000 perm   25 sec   (3193 perm/sec)   p_kst 7.386375e-01   p_cons 2.912500e-03   p_joint 1.496250e-02

Joint ci ratio: 1.062452e-01	ci left: 1.410777e-02	ci right 1.570150e-02	k: 1340	n:90000
Cons ci ratio: 2.413628e-01	ci left: 2.569678e-03	ci right 3.285179e-03	k: 262	n:90000
KS ci ratio: 7.760439e-03	ci left: 7.363628e-01	ci right 7.421106e-01	k: 66532	n:90000
MYOM3   90000 perm   29 sec   (3155 perm/sec)   p_kst 7.392444e-01   p_cons 2.911111e-03   p_joint 1.488889e-02

Joint ci ratio: 9.657032e-02	ci left: 1.542660e-02	ci right 1.700164e-02	k: 1620	n:100000
Cons ci ratio: 2.278932e-01	ci left: 2.613920e-03	ci right 3.295417e-03	k: 294	n:100000
KS ci ratio: 7.354266e-03	ci left: 7.369283e-01	ci right 7.423778e-01	k: 73966	n:100000
MYOM3   100000 perm   32 sec   (3118 perm/sec)   p_kst 7.396600e-01   p_cons 2.940000e-03   p_joint 1.620000e-02

Joint ci ratio: 9.210511e-02	ci left: 1.545330e-02	ci right 1.695418e-02	k: 1781	n:110000
Cons ci ratio: 2.171200e-01	ci left: 2.633828e-03	ci right 3.283727e-03	k: 324	n:110000
KS ci ratio: 7.011788e-03	ci left: 7.370687e-01	ci right 7.422641e-01	k: 81364	n:110000
MYOM3   110000 perm   36 sec   (3075 perm/sec)   p_kst 7.396727e-01   p_cons 2.945455e-03   p_joint 1.619091e-02

Joint ci ratio: 8.935929e-02	ci left: 1.507755e-02	ci right 1.649599e-02	k: 1893	n:120000
Cons ci ratio: 2.086292e-01	ci left: 2.627349e-03	ci right 3.247059e-03	k: 351	n:120000
KS ci ratio: 6.719484e-03	ci left: 7.368229e-01	ci right 7.417989e-01	k: 88718	n:120000
MYOM3   120000 perm   40 sec   (3038 perm/sec)   p_kst 7.393167e-01   p_cons 2.925000e-03   p_joint 1.577500e-02

Joint ci ratio: 8.450040e-02	ci left: 1.559602e-02	ci right 1.697952e-02	k: 2116	n:130000
Cons ci ratio: 2.005324e-01	ci left: 2.636899e-03	ci right 3.231770e-03	k: 380	n:130000
KS ci ratio: 6.456538e-03	ci left: 7.368812e-01	ci right 7.416620e-01	k: 96106	n:130000
MYOM3   130000 perm   43 sec   (2999 perm/sec)   p_kst 7.392769e-01   p_cons 2.923077e-03   p_joint 1.627692e-02

Joint ci ratio: 8.253481e-02	ci left: 1.520224e-02	ci right 1.651792e-02	k: 2219	n:140000
Cons ci ratio: 1.962117e-01	ci left: 2.563937e-03	ci right 3.128395e-03	k: 397	n:140000
KS ci ratio: 6.217961e-03	ci left: 7.371996e-01	ci right 7.418048e-01	k: 103531	n:140000
MYOM3   140000 perm   47 sec   (2959 perm/sec)   p_kst 7.395071e-01   p_cons 2.835714e-03   p_joint 1.585000e-02

Joint ci ratio: 8.163255e-02	ci left: 1.452157e-02	ci right 1.576394e-02	k: 2270	n:150000
Cons ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
KS ci ratio: 6.008688e-03	ci left: 7.371773e-01	ci right 7.416268e-01	k: 110911	n:150000
MYOM3   150000 perm   51 sec   (2923 perm/sec)   p_kst 7.394067e-01   p_cons 2.860000e-03   p_joint 1.513333e-02

Joint ci ratio: 7.933018e-02	ci left: 1.443459e-02	ci right 1.563308e-02	k: 2404	n:160000
Cons ci ratio: 1.817168e-01	ci left: 2.636467e-03	ci right 3.169299e-03	k: 463	n:160000
KS ci ratio: 5.814592e-03	ci left: 7.374673e-01	ci right 7.417740e-01	k: 118340	n:160000
MYOM3   160000 perm   55 sec   (2889 perm/sec)   p_kst 7.396250e-01   p_cons 2.893750e-03   p_joint 1.502500e-02

Joint ci ratio: 7.625738e-02	ci left: 1.472186e-02	ci right 1.589475e-02	k: 2601	n:170000
Cons ci ratio: 1.773770e-01	ci left: 2.610591e-03	ci right 3.124242e-03	k: 486	n:170000
KS ci ratio: 5.634630e-03	ci left: 7.379669e-01	ci right 7.421426e-01	k: 125810	n:170000
MYOM3   170000 perm   60 sec   (2847 perm/sec)   p_kst 7.400588e-01   p_cons 2.858824e-03   p_joint 1.530000e-02

Joint ci ratio: 7.525521e-02	ci left: 1.429083e-02	ci right 1.541376e-02	k: 2672	n:180000
Cons ci ratio: 1.726563e-01	ci left: 2.608988e-03	ci right 3.107238e-03	k: 513	n:180000
KS ci ratio: 5.473709e-03	ci left: 7.381787e-01	ci right 7.422358e-01	k: 133238	n:180000
MYOM3   180000 perm   64 sec   (2813 perm/sec)   p_kst 7.402111e-01   p_cons 2.850000e-03   p_joint 1.484444e-02

Joint ci ratio: 7.328102e-02	ci left: 1.429283e-02	ci right 1.538520e-02	k: 2818	n:190000
Cons ci ratio: 1.679823e-01	ci left: 2.617799e-03	ci right 3.102829e-03	k: 542	n:190000
KS ci ratio: 5.329913e-03	ci left: 7.380742e-01	ci right 7.420238e-01	k: 140610	n:190000
MYOM3   190000 perm   68 sec   (2779 perm/sec)   p_kst 7.400526e-01   p_cons 2.852632e-03   p_joint 1.483158e-02

Joint ci ratio: 7.023804e-02	ci left: 1.479608e-02	ci right 1.587804e-02	k: 3066	n:200000
Cons ci ratio: 1.643906e-01	ci left: 2.601917e-03	ci right 3.072676e-03	k: 566	n:200000
KS ci ratio: 5.196815e-03	ci left: 7.379865e-01	ci right 7.418366e-01	k: 147983	n:200000
MYOM3   200000 perm   73 sec   (2748 perm/sec)   p_kst 7.399150e-01   p_cons 2.830000e-03   p_joint 1.533000e-02

Joint ci ratio: 6.887567e-02	ci left: 1.466700e-02	ci right 1.571788e-02	k: 3189	n:210000
Cons ci ratio: 1.608834e-01	ci left: 2.592218e-03	ci right 3.050249e-03	k: 591	n:210000
KS ci ratio: 5.072900e-03	ci left: 7.379321e-01	ci right 7.416898e-01	k: 155361	n:210000
MYOM3   210000 perm   77 sec   (2717 perm/sec)   p_kst 7.398143e-01   p_cons 2.814286e-03   p_joint 1.518571e-02

Joint ci ratio: 6.419182e-02	ci left: 1.613284e-02	ci right 1.720722e-02	k: 3666	n:220000
Cons ci ratio: 1.570817e-01	ci left: 2.600965e-03	ci right 3.048658e-03	k: 620	n:220000
KS ci ratio: 4.960839e-03	ci left: 7.376195e-01	ci right 7.412923e-01	k: 162681	n:220000
MYOM3   220000 perm   82 sec   (2685 perm/sec)   p_kst 7.394591e-01   p_cons 2.818182e-03   p_joint 1.666364e-02

Joint ci ratio: 6.301260e-02	ci left: 1.602612e-02	ci right 1.707307e-02	k: 3805	n:230000
Cons ci ratio: 1.538939e-01	ci left: 2.596524e-03	ci right 3.033547e-03	k: 646	n:230000
KS ci ratio: 4.850679e-03	ci left: 7.377490e-01	ci right 7.413406e-01	k: 170096	n:230000
MYOM3   230000 perm   87 sec   (2654 perm/sec)   p_kst 7.395478e-01   p_cons 2.808696e-03   p_joint 1.654348e-02

Joint ci ratio: 5.994793e-02	ci left: 1.697915e-02	ci right 1.803255e-02	k: 4200	n:240000
Cons ci ratio: 1.518000e-01	ci left: 2.560463e-03	ci right 2.985020e-03	k: 664	n:240000
KS ci ratio: 4.467629e-03	ci left: 7.606377e-01	ci right 7.640476e-01	k: 182963	n:240000
MYOM3   240000 perm   92 sec   (2622 perm/sec)   p_kst 7.623458e-01   p_cons 2.766667e-03   p_joint 1.750000e-02

Joint ci ratio: 5.728197e-02	ci left: 1.786100e-02	ci right 1.891820e-02	k: 4596	n:250000
Cons ci ratio: 1.480603e-01	ci left: 2.588946e-03	ci right 3.006714e-03	k: 698	n:250000
KS ci ratio: 4.379029e-03	ci left: 7.605341e-01	ci right 7.638758e-01	k: 190552	n:250000
MYOM3   250000 perm   96 sec   (2593 perm/sec)   p_kst 7.622080e-01   p_cons 2.792000e-03   p_joint 1.838400e-02

Joint ci ratio: 5.546970e-02	ci left: 1.832312e-02	ci right 1.937226e-02	k: 4899	n:260000
Cons ci ratio: 1.454824e-01	ci left: 2.581993e-03	ci right 2.990754e-03	k: 723	n:260000
KS ci ratio: 4.295316e-03	ci left: 7.604546e-01	ci right 7.637318e-01	k: 198145	n:260000
MYOM3   260000 perm   101 sec   (2566 perm/sec)   p_kst 7.620962e-01   p_cons 2.780769e-03   p_joint 1.884231e-02

Joint ci ratio: 5.094312e-02	ci left: 2.091230e-02	ci right 2.200912e-02	k: 5793	n:270000
Cons ci ratio: 1.425582e-01	ci left: 2.593472e-03	ci right 2.995096e-03	k: 753	n:270000
KS ci ratio: 4.214462e-03	ci left: 7.605338e-01	ci right 7.637495e-01	k: 205779	n:270000
MYOM3   270000 perm   106 sec   (2537 perm/sec)   p_kst 7.621444e-01   p_cons 2.788889e-03   p_joint 2.145556e-02

Joint ci ratio: 5.232092e-02	ci left: 1.913910e-02	ci right 2.017088e-02	k: 5502	n:280000
Cons ci ratio: 1.404337e-01	ci left: 2.580082e-03	ci right 2.973179e-03	k: 776	n:280000
KS ci ratio: 4.138537e-03	ci left: 7.605613e-01	ci right 7.637190e-01	k: 213400	n:280000
MYOM3   280000 perm   112 sec   (2507 perm/sec)   p_kst 7.621429e-01   p_cons 2.771429e-03   p_joint 1.965000e-02

Joint ci ratio: 5.216054e-02	ci left: 1.860492e-02	ci right 1.960473e-02	k: 5539	n:290000
Cons ci ratio: 1.384882e-01	ci left: 2.564327e-03	ci right 2.949165e-03	k: 798	n:290000
KS ci ratio: 4.067657e-03	ci left: 7.604906e-01	ci right 7.635938e-01	k: 220993	n:290000
MYOM3   290000 perm   117 sec   (2479 perm/sec)   p_kst 7.620448e-01   p_cons 2.751724e-03   p_joint 1.910000e-02

Joint ci ratio: 4.812599e-02	ci left: 2.111570e-02	ci right 2.216024e-02	k: 6490	n:300000
Cons ci ratio: 1.314258e-01	ci left: 2.762303e-03	ci right 3.154063e-03	k: 886	n:300000
KS ci ratio: 3.998716e-03	ci left: 7.605688e-01	ci right 7.636195e-01	k: 228629	n:300000
MYOM3   300000 perm   122 sec   (2454 perm/sec)   p_kst 7.620967e-01   p_cons 2.953333e-03   p_joint 2.163333e-02

Joint ci ratio: 4.860404e-02	ci left: 2.005186e-02	ci right 2.105390e-02	k: 6370	n:310000
Cons ci ratio: 1.298272e-01	ci left: 2.741843e-03	ci right 3.125607e-03	k: 908	n:310000
KS ci ratio: 3.934146e-03	ci left: 7.605518e-01	ci right 7.635530e-01	k: 236237	n:310000
MYOM3   310000 perm   128 sec   (2430 perm/sec)   p_kst 7.620548e-01   p_cons 2.929032e-03   p_joint 2.054839e-02

Joint ci ratio: 4.797848e-02	ci left: 1.994387e-02	ci right 2.092734e-02	k: 6538	n:320000
Cons ci ratio: 1.279415e-01	ci left: 2.737815e-03	ci right 3.115026e-03	k: 935	n:320000
KS ci ratio: 3.870771e-03	ci left: 7.607085e-01	ci right 7.636618e-01	k: 243900	n:320000
MYOM3   320000 perm   133 sec   (2405 perm/sec)   p_kst 7.621875e-01   p_cons 2.921875e-03   p_joint 2.043125e-02

Joint ci ratio: 4.801613e-02	ci left: 1.932140e-02	ci right 2.027494e-02	k: 6532	n:330000
Cons ci ratio: 1.260044e-01	ci left: 2.739939e-03	ci right 3.111300e-03	k: 964	n:330000
KS ci ratio: 3.812273e-03	ci left: 7.606738e-01	ci right 7.635822e-01	k: 251503	n:330000
MYOM3   330000 perm   139 sec   (2381 perm/sec)   p_kst 7.621303e-01   p_cons 2.921212e-03   p_joint 1.979394e-02

Joint ci ratio: 4.711928e-02	ci left: 1.947971e-02	ci right 2.042261e-02	k: 6782	n:340000
Cons ci ratio: 1.244041e-01	ci left: 2.730578e-03	ci right 3.095623e-03	k: 989	n:340000
KS ci ratio: 3.757080e-03	ci left: 7.605707e-01	ci right 7.634365e-01	k: 259082	n:340000
MYOM3   340000 perm   144 sec   (2358 perm/sec)   p_kst 7.620059e-01   p_cons 2.908824e-03   p_joint 1.994706e-02

Joint ci ratio: 5.133708e-02	ci left: 1.596488e-02	ci right 1.680887e-02	k: 5734	n:350000
Cons ci ratio: 1.270758e-01	ci left: 2.539087e-03	ci right 2.886371e-03	k: 948	n:350000
KS ci ratio: 3.703400e-03	ci left: 7.605541e-01	ci right 7.633787e-01	k: 266689	n:350000
MYOM3   350000 perm   150 sec   (2334 perm/sec)   p_kst 7.619686e-01   p_cons 2.708571e-03   p_joint 1.638286e-02

Joint ci ratio: 4.479327e-02	ci left: 2.036375e-02	ci right 2.129954e-02	k: 7498	n:360000
Cons ci ratio: 1.205670e-01	ci left: 2.751212e-03	ci right 3.106863e-03	k: 1053	n:360000
KS ci ratio: 3.651593e-03	ci left: 7.605748e-01	ci right 7.633599e-01	k: 274309	n:360000
MYOM3   360000 perm   156 sec   (2312 perm/sec)   p_kst 7.619694e-01   p_cons 2.925000e-03   p_joint 2.082778e-02

Joint ci ratio: 4.435546e-02	ci left: 2.021423e-02	ci right 2.113384e-02	k: 7648	n:370000
Cons ci ratio: 1.191074e-01	ci left: 2.745019e-03	ci right 3.095270e-03	k: 1079	n:370000
KS ci ratio: 3.599539e-03	ci left: 7.608329e-01	ci right 7.635792e-01	k: 282017	n:370000
MYOM3   370000 perm   162 sec   (2290 perm/sec)   p_kst 7.622081e-01   p_cons 2.916216e-03   p_joint 2.067027e-02

Joint ci ratio: 4.415615e-02	ci left: 1.986958e-02	ci right 2.076934e-02	k: 7720	n:380000
Cons ci ratio: 1.175398e-01	ci left: 2.746839e-03	ci right 3.092389e-03	k: 1108	n:380000
KS ci ratio: 3.550419e-03	ci left: 7.609986e-01	ci right 7.637079e-01	k: 289695	n:380000
MYOM3   380000 perm   168 sec   (2268 perm/sec)   p_kst 7.623553e-01   p_cons 2.915789e-03   p_joint 2.031579e-02

Joint ci ratio: 4.323730e-02	ci left: 2.019455e-02	ci right 2.108952e-02	k: 8049	n:390000
Cons ci ratio: 1.157777e-01	ci left: 2.761043e-03	ci right 3.102818e-03	k: 1142	n:390000
KS ci ratio: 3.503106e-03	ci left: 7.611715e-01	ci right 7.638451e-01	k: 297379	n:390000
MYOM3   390000 perm   174 sec   (2246 perm/sec)   p_kst 7.625103e-01   p_cons 2.928205e-03   p_joint 2.063846e-02

Joint ci ratio: 4.269978e-02	ci left: 2.019420e-02	ci right 2.107776e-02	k: 8253	n:400000
Cons ci ratio: 1.140926e-01	ci left: 2.774575e-03	ci right 3.112689e-03	k: 1176	n:400000
KS ci ratio: 3.455724e-03	ci left: 7.615363e-01	ci right 7.641749e-01	k: 305143	n:400000
MYOM3   400000 perm   180 sec   (2224 perm/sec)   p_kst 7.628575e-01   p_cons 2.940000e-03   p_joint 2.063250e-02

Joint ci ratio: 4.249582e-02	ci left: 1.989947e-02	ci right 2.076587e-02	k: 8335	n:410000
Cons ci ratio: 1.121081e-01	ci left: 2.806446e-03	ci right 3.142103e-03	k: 1218	n:410000
KS ci ratio: 3.412597e-03	ci left: 7.616293e-01	ci right 7.642353e-01	k: 312803	n:410000
MYOM3   410000 perm   186 sec   (2204 perm/sec)   p_kst 7.629341e-01   p_cons 2.970732e-03   p_joint 2.032927e-02

Joint ci ratio: 4.203291e-02	ci left: 1.986148e-02	ci right 2.071658e-02	k: 8520	n:420000
Cons ci ratio: 1.109318e-01	ci left: 2.799803e-03	ci right 3.130922e-03	k: 1244	n:420000
KS ci ratio: 3.370891e-03	ci left: 7.617348e-01	ci right 7.643092e-01	k: 320470	n:420000
MYOM3   420000 perm   192 sec   (2183 perm/sec)   p_kst 7.630238e-01   p_cons 2.961905e-03   p_joint 2.028571e-02

Joint ci ratio: 4.120953e-02	ci left: 2.018443e-02	ci right 2.103600e-02	k: 8861	n:430000
Cons ci ratio: 1.095759e-01	ci left: 2.804797e-03	ci right 3.132190e-03	k: 1275	n:430000
KS ci ratio: 3.331126e-03	ci left: 7.617866e-01	ci right 7.643308e-01	k: 328116	n:430000
MYOM3   430000 perm   199 sec   (2163 perm/sec)   p_kst 7.630605e-01   p_cons 2.965116e-03   p_joint 2.060698e-02

Joint ci ratio: 4.124314e-02	ci left: 1.970310e-02	ci right 2.053506e-02	k: 8851	n:440000
Cons ci ratio: 1.083933e-01	ci left: 2.802953e-03	ci right 3.126374e-03	k: 1303	n:440000
KS ci ratio: 3.293709e-03	ci left: 7.617293e-01	ci right 7.642445e-01	k: 335715	n:440000
MYOM3   440000 perm   205 sec   (2144 perm/sec)   p_kst 7.629886e-01   p_cons 2.961364e-03   p_joint 2.011591e-02

Joint ci ratio: 4.020197e-02	ci left: 2.027498e-02	ci right 2.110898e-02	k: 9310	n:450000
Cons ci ratio: 1.072078e-01	ci left: 2.803372e-03	ci right 3.123081e-03	k: 1332	n:450000
KS ci ratio: 3.256644e-03	ci left: 7.617726e-01	ci right 7.642596e-01	k: 343358	n:450000
MYOM3   450000 perm   212 sec   (2125 perm/sec)   p_kst 7.630178e-01   p_cons 2.960000e-03   p_joint 2.068889e-02

Joint ci ratio: 4.006214e-02	ci left: 1.998050e-02	ci right 2.079947e-02	k: 9378	n:460000
Cons ci ratio: 1.062562e-01	ci left: 2.793210e-03	ci right 3.108755e-03	k: 1356	n:460000
KS ci ratio: 3.289722e-03	ci left: 7.540593e-01	ci right 7.565462e-01	k: 347440	n:460000
MYOM3   460000 perm   219 sec   (2102 perm/sec)   p_kst 7.553043e-01   p_cons 2.947826e-03   p_joint 2.038696e-02

Joint ci ratio: 3.959338e-02	ci left: 2.002514e-02	ci right 2.083611e-02	k: 9601	n:470000
Cons ci ratio: 1.048734e-01	ci left: 2.808354e-03	ci right 3.121227e-03	k: 1392	n:470000
KS ci ratio: 3.254275e-03	ci left: 7.541024e-01	ci right 7.565625e-01	k: 355007	n:470000
MYOM3   470000 perm   225 sec   (2085 perm/sec)   p_kst 7.553340e-01   p_cons 2.961702e-03   p_joint 2.042766e-02

Joint ci ratio: 3.933115e-02	ci left: 1.987608e-02	ci right 2.067556e-02	k: 9731	n:480000
Cons ci ratio: 1.037986e-01	ci left: 2.808687e-03	ci right 3.118194e-03	k: 1421	n:480000
KS ci ratio: 3.219151e-03	ci left: 7.542356e-01	ci right 7.566696e-01	k: 362618	n:480000
MYOM3   480000 perm   232 sec   (2067 perm/sec)   p_kst 7.554542e-01   p_cons 2.960417e-03   p_joint 2.027292e-02

Joint ci ratio: 3.867765e-02	ci left: 2.013538e-02	ci right 2.093153e-02	k: 10060	n:490000
Cons ci ratio: 1.030415e-01	ci left: 2.793114e-03	ci right 3.098524e-03	k: 1442	n:490000
KS ci ratio: 3.186231e-03	ci left: 7.542368e-01	ci right 7.566459e-01	k: 370167	n:490000
MYOM3   490000 perm   239 sec   (2050 perm/sec)   p_kst 7.554429e-01   p_cons 2.942857e-03   p_joint 2.053061e-02

Joint ci ratio: 4.387224e-02	ci left: 1.537109e-02	ci right 1.606254e-02	k: 7857	n:500000
Cons ci ratio: 1.116800e-01	ci left: 2.320694e-03	ci right 2.597122e-03	k: 1228	n:500000
KS ci ratio: 3.154301e-03	ci left: 7.542381e-01	ci right 7.566229e-01	k: 377716	n:500000
MYOM3   500000 perm   246 sec   (2032 perm/sec)   p_kst 7.554320e-01   p_cons 2.456000e-03   p_joint 1.571400e-02

Joint ci ratio: 4.301172e-02	ci left: 1.568069e-02	ci right 1.637189e-02	k: 8172	n:510000
Cons ci ratio: 1.106053e-01	ci left: 2.320940e-03	ci right 2.594565e-03	k: 1252	n:510000
KS ci ratio: 3.122731e-03	ci left: 7.543082e-01	ci right 7.566693e-01	k: 385300	n:510000
MYOM3   510000 perm   253 sec   (2014 perm/sec)   p_kst 7.554902e-01   p_cons 2.454902e-03   p_joint 1.602353e-02

Joint ci ratio: 4.152109e-02	ci left: 1.650190e-02	ci right 1.720350e-02	k: 8762	n:520000
Cons ci ratio: 1.091761e-01	ci left: 2.338025e-03	ci right 2.609873e-03	k: 1285	n:520000
KS ci ratio: 3.092863e-03	ci left: 7.542832e-01	ci right 7.566216e-01	k: 392836	n:520000
MYOM3   520000 perm   261 sec   (1996 perm/sec)   p_kst 7.554538e-01   p_cons 2.471154e-03   p_joint 1.685000e-02

Joint ci ratio: 4.192358e-02	ci left: 1.588797e-02	ci right 1.657016e-02	k: 8600	n:530000
Cons ci ratio: 1.084623e-01	ci left: 2.325113e-03	ci right 2.593579e-03	k: 1302	n:530000
KS ci ratio: 3.062585e-03	ci left: 7.544105e-01	ci right 7.567263e-01	k: 400452	n:530000
MYOM3   530000 perm   268 sec   (1979 perm/sec)   p_kst 7.555698e-01   p_cons 2.456604e-03   p_joint 1.622642e-02

Joint ci ratio: 4.093762e-02	ci left: 1.635438e-02	ci right 1.703970e-02	k: 9015	n:540000
Cons ci ratio: 1.071538e-01	ci left: 2.339718e-03	ci right 2.606405e-03	k: 1334	n:540000
KS ci ratio: 3.034638e-03	ci left: 7.543551e-01	ci right 7.566496e-01	k: 407972	n:540000
MYOM3   540000 perm   275 sec   (1962 perm/sec)   p_kst 7.555037e-01   p_cons 2.470370e-03   p_joint 1.669444e-02

Joint ci ratio: 4.014773e-02	ci left: 1.669600e-02	ci right 1.738183e-02	k: 9370	n:550000
Cons ci ratio: 1.061252e-01	ci left: 2.343190e-03	ci right 2.607549e-03	k: 1360	n:550000
KS ci ratio: 3.007487e-03	ci left: 7.542963e-01	ci right 7.565701e-01	k: 415489	n:550000
MYOM3   550000 perm   283 sec   (1947 perm/sec)   p_kst 7.554345e-01   p_cons 2.472727e-03   p_joint 1.703636e-02

Joint ci ratio: 4.075976e-02	ci left: 1.591693e-02	ci right 1.658095e-02	k: 9098	n:560000
Cons ci ratio: 1.052780e-01	ci left: 2.339594e-03	ci right 2.601310e-03	k: 1382	n:560000
KS ci ratio: 2.980418e-03	ci left: 7.543185e-01	ci right 7.565718e-01	k: 423050	n:560000
MYOM3   560000 perm   290 sec   (1930 perm/sec)   p_kst 7.554464e-01   p_cons 2.467857e-03   p_joint 1.624643e-02

Joint ci ratio: 4.020796e-02	ci left: 1.607186e-02	ci right 1.673306e-02	k: 9348	n:570000
Cons ci ratio: 1.045627e-01	ci left: 2.331006e-03	ci right 2.589881e-03	k: 1401	n:570000
KS ci ratio: 2.954908e-03	ci left: 7.542345e-01	ci right 7.564682e-01	k: 430551	n:570000
MYOM3   570000 perm   298 sec   (1914 perm/sec)   p_kst 7.553526e-01   p_cons 2.457895e-03   p_joint 1.640000e-02

Joint ci ratio: 4.076682e-02	ci left: 1.537139e-02	ci right 1.601277e-02	k: 9100	n:580000
Cons ci ratio: 1.037156e-01	ci left: 2.329439e-03	ci right 2.585916e-03	k: 1424	n:580000
KS ci ratio: 2.928839e-03	ci left: 7.543054e-01	ci right 7.565196e-01	k: 438140	n:580000
MYOM3   580000 perm   305 sec   (1899 perm/sec)   p_kst 7.554138e-01   p_cons 2.455172e-03   p_joint 1.568966e-02

Joint ci ratio: 4.041523e-02	ci left: 1.537762e-02	ci right 1.601359e-02	k: 9259	n:590000
Cons ci ratio: 1.027111e-01	ci left: 2.336190e-03	ci right 2.590769e-03	k: 1452	n:590000
KS ci ratio: 2.904460e-03	ci left: 7.542451e-01	ci right 7.564406e-01	k: 445653	n:590000
MYOM3   590000 perm   313 sec   (1884 perm/sec)   p_kst 7.553441e-01   p_cons 2.461017e-03   p_joint 1.569322e-02

Joint ci ratio: 3.927731e-02	ci left: 1.600916e-02	ci right 1.665219e-02	k: 9797	n:600000
Cons ci ratio: 1.019079e-01	ci left: 2.334606e-03	ci right 2.586903e-03	k: 1475	n:600000
KS ci ratio: 2.881316e-03	ci left: 7.541050e-01	ci right 7.562826e-01	k: 453117	n:600000
MYOM3   600000 perm   321 sec   (1870 perm/sec)   p_kst 7.551950e-01   p_cons 2.458333e-03   p_joint 1.632833e-02

Joint ci ratio: 3.903238e-02	ci left: 1.594799e-02	ci right 1.658448e-02	k: 9921	n:610000
Cons ci ratio: 1.009545e-01	ci left: 2.341071e-03	ci right 2.591560e-03	k: 1503	n:610000
KS ci ratio: 2.857119e-03	ci left: 7.541764e-01	ci right 7.563359e-01	k: 460707	n:610000
MYOM3   610000 perm   329 sec   (1855 perm/sec)   p_kst 7.552574e-01   p_cons 2.463934e-03   p_joint 1.626393e-02

Joint ci ratio: 3.812430e-02	ci left: 1.644639e-02	ci right 1.708717e-02	k: 10394	n:620000
Cons ci ratio: 1.000602e-01	ci left: 2.345766e-03	ci right 2.594403e-03	k: 1530	n:620000
KS ci ratio: 2.833398e-03	ci left: 7.542618e-01	ci right 7.564035e-01	k: 468307	n:620000
MYOM3   620000 perm   337 sec   (1841 perm/sec)   p_kst 7.553339e-01   p_cons 2.467742e-03   p_joint 1.676452e-02

Joint ci ratio: 3.758357e-02	ci left: 1.665548e-02	ci right 1.729500e-02	k: 10693	n:630000
Cons ci ratio: 9.934913e-02	ci left: 2.342581e-03	ci right 2.589014e-03	k: 1552	n:630000
KS ci ratio: 2.810994e-03	ci left: 7.542476e-01	ci right 7.563723e-01	k: 475846	n:630000
MYOM3   630000 perm   345 sec   (1824 perm/sec)   p_kst 7.553111e-01   p_cons 2.463492e-03   p_joint 1.697302e-02

Outputting figure to mutsig2_images.part000000000111/MYOM3.10_4458_630000_0.75531_0.0024635_0.016973.png
                gene_name: MYOM3
               theta_stop: 0.099 
                    nperm: 630000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.0025 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0026 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.017 

Current progress: 27 percent done.
MYO1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.727431e-02	ci left: 1.328630e-01	ci right 1.465476e-01	k: 1396	n:10000
Cons ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
MYO1H   10000 perm   2 sec   (4404 perm/sec)   p_kst 7.410000e-02   p_cons 4.321000e-01   p_joint 1.396000e-01

Joint ci ratio: 6.071979e-02	ci left: 1.671880e-01	ci right 1.777075e-01	k: 3448	n:20000
Cons ci ratio: 3.030021e-02	ci left: 4.486298e-01	ci right 4.624831e-01	k: 9111	n:20000
KS ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
MYO1H   20000 perm   5 sec   (3978 perm/sec)   p_kst 7.315000e-02   p_cons 4.555500e-01   p_joint 1.724000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1H.9_3193_20000_0.07315_0.45555_0.1724.png
                gene_name: MYO1H
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 29 percent done.
MYO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
MYO5A   10000 perm   3 sec   (3534 perm/sec)   p_kst 8.077000e-01   p_cons 2.500000e-02   p_joint 1.304000e-01

Joint ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
Cons ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
KS ci ratio: 1.384873e-02	ci left: 7.946405e-01	ci right 8.057721e-01	k: 16005	n:20000
MYO5A   20000 perm   6 sec   (3275 perm/sec)   p_kst 8.002500e-01   p_cons 2.955000e-02   p_joint 1.224500e-01

Joint ci ratio: 5.717354e-02	ci left: 1.315800e-01	ci right 1.393574e-01	k: 4063	n:30000
Cons ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
KS ci ratio: 1.129381e-02	ci left: 7.960667e-01	ci right 8.051417e-01	k: 24019	n:30000
MYO5A   30000 perm   9 sec   (3169 perm/sec)   p_kst 8.006333e-01   p_cons 2.973333e-02   p_joint 1.354333e-01

Joint ci ratio: 4.652021e-02	ci left: 1.472318e-01	ci right 1.542690e-01	k: 6029	n:40000
Cons ci ratio: 1.112104e-01	ci left: 2.844726e-02	ci right 3.182141e-02	k: 1204	n:40000
KS ci ratio: 9.509792e-03	ci left: 8.055664e-01	ci right 8.132887e-01	k: 32378	n:40000
MYO5A   40000 perm   13 sec   (3077 perm/sec)   p_kst 8.094500e-01   p_cons 3.010000e-02   p_joint 1.507250e-01

Joint ci ratio: 4.355069e-02	ci left: 1.363949e-01	ci right 1.424871e-01	k: 6971	n:50000
Cons ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
KS ci ratio: 8.503314e-03	ci left: 8.060703e-01	ci right 8.129737e-01	k: 40477	n:50000
MYO5A   50000 perm   17 sec   (3026 perm/sec)   p_kst 8.095400e-01   p_cons 3.066000e-02   p_joint 1.394200e-01

Outputting figure to mutsig2_images.part000000000111/MYO5A.9_5732_50000_0.80954_0.03066_0.13942.png
                gene_name: MYO5A
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 30 percent done.
NAALADL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
Cons ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
NAALADL2   10000 perm   2 sec   (4521 perm/sec)   p_kst 3.200000e-02   p_cons 8.392000e-01   p_joint 1.747000e-01

Joint ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
Cons ci ratio: 1.181103e-02	ci left: 8.412770e-01	ci right 8.513221e-01	k: 16927	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
NAALADL2   20000 perm   5 sec   (4141 perm/sec)   p_kst 3.020000e-02   p_cons 8.463500e-01   p_joint 7.905000e-02

Joint ci ratio: 6.189457e-02	ci left: 1.142712e-01	ci right 1.216030e-01	k: 3537	n:30000
Cons ci ratio: 9.968291e-03	ci left: 8.333099e-01	ci right 8.416913e-01	k: 25126	n:30000
KS ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
NAALADL2   30000 perm   8 sec   (3956 perm/sec)   p_kst 3.166667e-02   p_cons 8.375333e-01   p_joint 1.179000e-01

Joint ci ratio: 6.498746e-02	ci left: 8.065904e-02	ci right 8.610162e-02	k: 3334	n:40000
Cons ci ratio: 8.636951e-03	ci left: 8.337469e-01	ci right 8.410041e-01	k: 33496	n:40000
KS ci ratio: 1.119307e-01	ci left: 2.808243e-02	ci right 3.143630e-02	k: 1189	n:40000
NAALADL2   40000 perm   10 sec   (3865 perm/sec)   p_kst 2.972500e-02   p_cons 8.374000e-01   p_joint 8.335000e-02

Joint ci ratio: 5.476641e-02	ci left: 9.038896e-02	ci right 9.549841e-02	k: 4646	n:50000
Cons ci ratio: 7.729057e-03	ci left: 8.339949e-01	ci right 8.404858e-01	k: 41863	n:50000
KS ci ratio: 1.002705e-01	ci left: 2.817084e-02	ci right 3.116409e-02	k: 1482	n:50000
NAALADL2   50000 perm   13 sec   (3789 perm/sec)   p_kst 2.964000e-02   p_cons 8.372600e-01   p_joint 9.292000e-02

Joint ci ratio: 5.529017e-02	ci left: 7.515875e-02	ci right 7.944891e-02	k: 4637	n:60000
Cons ci ratio: 7.072688e-03	ci left: 8.336170e-01	ci right 8.395504e-01	k: 50196	n:60000
KS ci ratio: 9.203104e-02	ci left: 2.799763e-02	ci right 3.071481e-02	k: 1760	n:60000
NAALADL2   60000 perm   16 sec   (3719 perm/sec)   p_kst 2.933333e-02   p_cons 8.366000e-01   p_joint 7.728333e-02

Outputting figure to mutsig2_images.part000000000111/NAALADL2.9_2444_60000_0.029333_0.8366_0.077283.png
                gene_name: NAALADL2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.079 

Current progress: 32 percent done.
MYST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
KS ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
MYST3   10000 perm   3 sec   (3608 perm/sec)   p_kst 6.387000e-01   p_cons 8.660000e-02   p_joint 3.194000e-01

Joint ci ratio: 5.677031e-02	ci left: 1.870064e-01	ci right 1.979831e-01	k: 3849	n:20000
Cons ci ratio: 8.993368e-02	ci left: 8.283542e-02	ci right 9.068521e-02	k: 1734	n:20000
KS ci ratio: 1.991835e-02	ci left: 6.528345e-01	ci right 6.660192e-01	k: 13189	n:20000
MYST3   20000 perm   6 sec   (3308 perm/sec)   p_kst 6.594500e-01   p_cons 8.670000e-02   p_joint 1.924500e-01

Outputting figure to mutsig2_images.part000000000111/MYST3.8_6079_20000_0.65945_0.0867_0.19245.png
                gene_name: MYST3
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
MYST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
Cons ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
KS ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
MYST4   10000 perm   3 sec   (3503 perm/sec)   p_kst 4.650000e-02   p_cons 4.563000e-01   p_joint 8.320000e-02

Joint ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
Cons ci ratio: 3.033076e-02	ci left: 4.481305e-01	ci right 4.619826e-01	k: 9101	n:20000
KS ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
MYST4   20000 perm   6 sec   (3227 perm/sec)   p_kst 4.455000e-02   p_cons 4.550500e-01   p_joint 7.840000e-02

Joint ci ratio: 7.339245e-02	ci left: 8.363757e-02	ci right 9.004271e-02	k: 2604	n:30000
Cons ci ratio: 2.502608e-02	ci left: 4.442257e-01	ci right 4.555174e-01	k: 13496	n:30000
KS ci ratio: 1.049118e-01	ci left: 4.212918e-02	ci right 4.682621e-02	k: 1333	n:30000
MYST4   30000 perm   10 sec   (3127 perm/sec)   p_kst 4.443333e-02   p_cons 4.498667e-01   p_joint 8.680000e-02

Joint ci ratio: 7.161934e-02	ci left: 6.717420e-02	ci right 7.218849e-02	k: 2786	n:40000
Cons ci ratio: 2.172578e-02	ci left: 4.437923e-01	ci right 4.535651e-01	k: 17947	n:40000
KS ci ratio: 9.092802e-02	ci left: 4.237759e-02	ci right 4.643888e-02	k: 1775	n:40000
MYST4   40000 perm   13 sec   (3057 perm/sec)   p_kst 4.437500e-02   p_cons 4.486750e-01   p_joint 6.965000e-02

Outputting figure to mutsig2_images.part000000000111/MYST4.8_6286_40000_0.044375_0.44867_0.06965.png
                gene_name: MYST4
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 35 percent done.
MYO7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
KS ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
MYO7A   10000 perm   3 sec   (3626 perm/sec)   p_kst 2.149000e-01   p_cons 7.150000e-02   p_joint 7.000000e-02

Joint ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
Cons ci ratio: 9.877348e-02	ci left: 6.938317e-02	ci right 7.664156e-02	k: 1459	n:20000
KS ci ratio: 5.364009e-02	ci left: 2.050656e-01	ci right 2.164187e-01	k: 4214	n:20000
MYO7A   20000 perm   6 sec   (3302 perm/sec)   p_kst 2.107000e-01   p_cons 7.295000e-02   p_joint 1.124000e-01

Outputting figure to mutsig2_images.part000000000111/MYO7A.7_6874_20000_0.2107_0.07295_0.1124.png
                gene_name: MYO7A
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 37 percent done.
MYO9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
Cons ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
KS ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
MYO9B   10000 perm   3 sec   (3543 perm/sec)   p_kst 8.166000e-01   p_cons 1.010000e-02   p_joint 4.710000e-02

Joint ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
Cons ci ratio: 2.652715e-01	ci left: 9.367279e-03	ci right 1.227757e-02	k: 215	n:20000
KS ci ratio: 1.353180e-02	ci left: 8.020169e-01	ci right 8.129936e-01	k: 16151	n:20000
MYO9B   20000 perm   6 sec   (3245 perm/sec)   p_kst 8.075500e-01   p_cons 1.075000e-02   p_joint 4.870000e-02

Joint ci ratio: 1.121442e-01	ci left: 3.693468e-02	ci right 4.135514e-02	k: 1173	n:30000
Cons ci ratio: 2.323291e-01	ci left: 8.307694e-03	ci right 1.052221e-02	k: 281	n:30000
KS ci ratio: 1.113440e-02	ci left: 8.006050e-01	ci right 8.096025e-01	k: 24154	n:30000
MYO9B   30000 perm   10 sec   (3137 perm/sec)   p_kst 8.051333e-01   p_cons 9.366667e-03   p_joint 3.910000e-02

Joint ci ratio: 9.768437e-02	ci left: 3.680646e-02	ci right 4.061088e-02	k: 1547	n:40000
Cons ci ratio: 2.039596e-01	ci left: 8.216425e-03	ci right 1.010586e-02	k: 365	n:40000
KS ci ratio: 9.616767e-03	ci left: 8.020650e-01	ci right 8.098405e-01	k: 32239	n:40000
MYO9B   40000 perm   13 sec   (3060 perm/sec)   p_kst 8.059750e-01   p_cons 9.125000e-03   p_joint 3.867500e-02

Joint ci ratio: 7.135741e-02	ci left: 5.488529e-02	ci right 5.896634e-02	k: 2845	n:50000
Cons ci ratio: 1.807405e-01	ci left: 8.477237e-03	ci right 1.018046e-02	k: 465	n:50000
KS ci ratio: 8.166315e-03	ci left: 8.183163e-01	ci right 8.250463e-01	k: 41085	n:50000
MYO9B   50000 perm   17 sec   (2955 perm/sec)   p_kst 8.217000e-01   p_cons 9.300000e-03   p_joint 5.690000e-02

Joint ci ratio: 7.033830e-02	ci left: 4.748289e-02	ci right 5.096087e-02	k: 2952	n:60000
Cons ci ratio: 1.628318e-01	ci left: 8.787262e-03	ci right 1.036072e-02	k: 573	n:60000
KS ci ratio: 7.473000e-03	ci left: 8.178920e-01	ci right 8.240436e-01	k: 49259	n:60000
MYO9B   60000 perm   21 sec   (2917 perm/sec)   p_kst 8.209833e-01   p_cons 9.550000e-03   p_joint 4.920000e-02

Joint ci ratio: 6.071642e-02	ci left: 5.449109e-02	ci right 5.791724e-02	k: 3933	n:70000
Cons ci ratio: 1.504886e-01	ci left: 8.877152e-03	ci right 1.033536e-02	k: 671	n:70000
KS ci ratio: 6.898404e-03	ci left: 8.189878e-01	ci right 8.246712e-01	k: 57529	n:70000
MYO9B   70000 perm   24 sec   (2866 perm/sec)   p_kst 8.218429e-01   p_cons 9.585714e-03   p_joint 5.618571e-02

Joint ci ratio: 5.638429e-02	ci left: 5.536628e-02	ci right 5.859095e-02	k: 4557	n:80000
Cons ci ratio: 1.400348e-01	ci left: 9.020350e-03	ci right 1.039056e-02	k: 775	n:80000
KS ci ratio: 6.444436e-03	ci left: 8.195578e-01	ci right 8.248688e-01	k: 65778	n:80000
MYO9B   80000 perm   29 sec   (2793 perm/sec)   p_kst 8.222250e-01   p_cons 9.687500e-03   p_joint 5.696250e-02

Joint ci ratio: 5.602513e-02	ci left: 5.014172e-02	ci right 5.304282e-02	k: 4642	n:90000
Cons ci ratio: 1.312691e-01	ci left: 9.166704e-03	ci right 1.046518e-02	k: 882	n:90000
KS ci ratio: 6.088851e-03	ci left: 8.190829e-01	ci right 8.240964e-01	k: 73944	n:90000
MYO9B   90000 perm   33 sec   (2765 perm/sec)   p_kst 8.216000e-01   p_cons 9.800000e-03   p_joint 5.157778e-02

Joint ci ratio: 5.358906e-02	ci left: 4.942730e-02	ci right 5.215883e-02	k: 5078	n:100000
Cons ci ratio: 1.253163e-01	ci left: 9.082415e-03	ci right 1.030628e-02	k: 968	n:100000
KS ci ratio: 5.777766e-03	ci left: 8.191424e-01	ci right 8.238989e-01	k: 82153	n:100000
MYO9B   100000 perm   37 sec   (2736 perm/sec)   p_kst 8.215300e-01   p_cons 9.680000e-03   p_joint 5.078000e-02

Joint ci ratio: 5.218119e-02	ci left: 4.752518e-02	ci right 5.008049e-02	k: 5367	n:110000
Cons ci ratio: 1.199341e-01	ci left: 9.041007e-03	ci right 1.020325e-02	k: 1057	n:110000
KS ci ratio: 5.513542e-03	ci left: 8.190048e-01	ci right 8.235419e-01	k: 90341	n:110000
MYO9B   110000 perm   41 sec   (2708 perm/sec)   p_kst 8.212818e-01   p_cons 9.609091e-03   p_joint 4.879091e-02

Joint ci ratio: 4.947749e-02	ci left: 4.847712e-02	ci right 5.094470e-02	k: 5964	n:120000
Cons ci ratio: 1.149379e-01	ci left: 9.047919e-03	ci right 1.015931e-02	k: 1151	n:120000
KS ci ratio: 5.275338e-03	ci left: 8.192963e-01	ci right 8.236381e-01	k: 98577	n:120000
MYO9B   120000 perm   45 sec   (2680 perm/sec)   p_kst 8.214750e-01   p_cons 9.591667e-03   p_joint 4.970000e-02

Joint ci ratio: 4.545395e-02	ci left: 5.288402e-02	ci right 5.535130e-02	k: 7034	n:130000
Cons ci ratio: 1.107428e-01	ci left: 9.017212e-03	ci right 1.008176e-02	k: 1240	n:130000
KS ci ratio: 5.070073e-03	ci left: 8.192837e-01	ci right 8.234558e-01	k: 106779	n:130000
MYO9B   130000 perm   49 sec   (2653 perm/sec)   p_kst 8.213769e-01   p_cons 9.538462e-03   p_joint 5.410769e-02

Joint ci ratio: 4.380100e-02	ci left: 5.292778e-02	ci right 5.530502e-02	k: 7575	n:140000
Cons ci ratio: 1.081729e-01	ci left: 8.789908e-03	ci right 9.802001e-03	k: 1300	n:140000
KS ci ratio: 4.889658e-03	ci left: 8.191180e-01	ci right 8.231401e-01	k: 114959	n:140000
MYO9B   140000 perm   53 sec   (2625 perm/sec)   p_kst 8.211357e-01   p_cons 9.285714e-03   p_joint 5.410714e-02

Joint ci ratio: 4.402541e-02	ci left: 4.909375e-02	ci right 5.131034e-02	k: 7529	n:150000
Cons ci ratio: 1.043136e-01	ci left: 8.839900e-03	ci right 9.819207e-03	k: 1398	n:150000
KS ci ratio: 4.722716e-03	ci left: 8.192580e-01	ci right 8.231429e-01	k: 123181	n:150000
MYO9B   150000 perm   58 sec   (2597 perm/sec)   p_kst 8.212067e-01   p_cons 9.320000e-03   p_joint 5.019333e-02

Joint ci ratio: 4.241932e-02	ci left: 4.959294e-02	ci right 5.174838e-02	k: 8106	n:160000
Cons ci ratio: 1.002334e-01	ci left: 8.993900e-03	ci right 9.949002e-03	k: 1514	n:160000
KS ci ratio: 4.575383e-03	ci left: 8.191503e-01	ci right 8.229130e-01	k: 131366	n:160000
MYO9B   160000 perm   62 sec   (2567 perm/sec)   p_kst 8.210375e-01   p_cons 9.462500e-03   p_joint 5.066250e-02

Joint ci ratio: 3.993136e-02	ci left: 5.257483e-02	ci right 5.472278e-02	k: 9119	n:170000
Cons ci ratio: 9.744527e-02	ci left: 8.969693e-03	ci right 9.894212e-03	k: 1602	n:170000
KS ci ratio: 4.438806e-03	ci left: 8.192047e-01	ci right 8.228549e-01	k: 139576	n:170000
MYO9B   170000 perm   67 sec   (2539 perm/sec)   p_kst 8.210353e-01   p_cons 9.423529e-03   p_joint 5.364118e-02

Outputting figure to mutsig2_images.part000000000111/MYO9B.7_6641_170000_0.82104_0.0094235_0.053641.png
                gene_name: MYO9B
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0099 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.055 

Current progress: 38 percent done.
N4BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
Cons ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
KS ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
N4BP1   10000 perm   2 sec   (5006 perm/sec)   p_kst 4.655000e-01   p_cons 1.278000e-01   p_joint 2.479000e-01

Joint ci ratio: 4.726593e-02	ci left: 2.498136e-01	ci right 2.619574e-01	k: 5117	n:20000
Cons ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
KS ci ratio: 2.875297e-02	ci left: 4.747032e-01	ci right 4.886021e-01	k: 9633	n:20000
N4BP1   20000 perm   4 sec   (4512 perm/sec)   p_kst 4.816500e-01   p_cons 1.286500e-01   p_joint 2.558500e-01

Outputting figure to mutsig2_images.part000000000111/N4BP1.7_2719_20000_0.48165_0.12865_0.25585.png
                gene_name: N4BP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 40 percent done.
NAA35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
KS ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
NAA35   10000 perm   2 sec   (5049 perm/sec)   p_kst 7.728000e-01   p_cons 3.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAA35.7_2266_10000_0.7728_0.3993_1.png
                gene_name: NAA35
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
NAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 2.722952e-02	ci left: 6.652165e-01	ci right 6.836817e-01	k: 6745	n:10000
NAP1L2   10000 perm   2 sec   (5490 perm/sec)   p_kst 6.745000e-01   p_cons 4.556000e-01   p_joint 8.812000e-01

Outputting figure to mutsig2_images.part000000000111/NAP1L2.7_1387_10000_0.6745_0.4556_0.8812.png
                gene_name: NAP1L2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 43 percent done.
MYO1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
KS ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
MYO1G   10000 perm   2 sec   (4710 perm/sec)   p_kst 1.185000e-01   p_cons 3.230000e-02   p_joint 4.150000e-02

Joint ci ratio: 1.176346e-01	ci left: 4.949781e-02	ci right 5.573307e-02	k: 1051	n:20000
Cons ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
KS ci ratio: 7.425455e-02	ci left: 1.177403e-01	ci right 1.268698e-01	k: 2445	n:20000
MYO1G   20000 perm   5 sec   (4248 perm/sec)   p_kst 1.222500e-01   p_cons 3.035000e-02   p_joint 5.255000e-02

Joint ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
Cons ci ratio: 1.232858e-01	ci left: 3.058681e-02	ci right 3.463770e-02	k: 977	n:30000
KS ci ratio: 6.068550e-02	ci left: 1.183823e-01	ci right 1.258244e-01	k: 3662	n:30000
MYO1G   30000 perm   7 sec   (4045 perm/sec)   p_kst 1.220667e-01   p_cons 3.256667e-02   p_joint 5.370000e-02

Joint ci ratio: 1.105032e-01	ci left: 2.881216e-02	ci right 3.220645e-02	k: 1219	n:40000
Cons ci ratio: 1.148481e-01	ci left: 2.667242e-02	ci right 2.994654e-02	k: 1131	n:40000
KS ci ratio: 5.271529e-02	ci left: 1.182392e-01	ci right 1.246658e-01	k: 4857	n:40000
MYO1G   40000 perm   10 sec   (3929 perm/sec)   p_kst 1.214250e-01   p_cons 2.827500e-02   p_joint 3.047500e-02

Joint ci ratio: 1.047602e-01	ci left: 2.581119e-02	ci right 2.868405e-02	k: 1361	n:50000
Cons ci ratio: 9.913947e-02	ci left: 2.881486e-02	ci right 3.184000e-02	k: 1515	n:50000
KS ci ratio: 4.718325e-02	ci left: 1.184306e-01	ci right 1.241734e-01	k: 6064	n:50000
MYO1G   50000 perm   13 sec   (3840 perm/sec)   p_kst 1.212800e-01   p_cons 3.030000e-02   p_joint 2.722000e-02

Joint ci ratio: 7.003946e-02	ci left: 4.787622e-02	ci right 5.136751e-02	k: 2976	n:60000
Cons ci ratio: 9.276627e-02	ci left: 2.755774e-02	ci right 3.025475e-02	k: 1733	n:60000
KS ci ratio: 4.410980e-02	ci left: 1.137451e-01	ci right 1.188921e-01	k: 6978	n:60000
MYO1G   60000 perm   16 sec   (3761 perm/sec)   p_kst 1.163000e-01   p_cons 2.888333e-02   p_joint 4.960000e-02

Outputting figure to mutsig2_images.part000000000111/MYO1G.6_3145_60000_0.1163_0.028883_0.0496.png
                gene_name: MYO1G
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 44 percent done.
MYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
Cons ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
KS ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
MYT1   10000 perm   2 sec   (4434 perm/sec)   p_kst 2.211000e-01   p_cons 8.391000e-01   p_joint 3.645000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1.6_3450_10000_0.2211_0.8391_0.3645.png
                gene_name: MYT1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 46 percent done.
N4BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
Cons ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
KS ci ratio: 7.580070e-02	ci left: 2.029395e-01	ci right 2.190293e-01	k: 2109	n:10000
N4BP2   10000 perm   3 sec   (3803 perm/sec)   p_kst 2.109000e-01   p_cons 3.759000e-01   p_joint 2.832000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2.6_5377_10000_0.2109_0.3759_0.2832.png
                gene_name: N4BP2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 48 percent done.
MYO19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
Cons ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
KS ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
MYO19   10000 perm   2 sec   (4794 perm/sec)   p_kst 5.114000e-01   p_cons 3.850000e-02   p_joint 1.429000e-01

Joint ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
Cons ci ratio: 1.383310e-01	ci left: 3.592413e-02	ci right 4.131107e-02	k: 771	n:20000
KS ci ratio: 2.830474e-02	ci left: 4.825490e-01	ci right 4.964541e-01	k: 9790	n:20000
MYO19   20000 perm   5 sec   (4274 perm/sec)   p_kst 4.895000e-01   p_cons 3.855000e-02   p_joint 1.061000e-01

Joint ci ratio: 6.667965e-02	ci left: 9.984504e-02	ci right 1.067653e-01	k: 3098	n:30000
Cons ci ratio: 1.129984e-01	ci left: 3.638338e-02	ci right 4.077323e-02	k: 1156	n:30000
KS ci ratio: 2.207658e-02	ci left: 5.067262e-01	ci right 5.180714e-01	k: 15372	n:30000
MYO19   30000 perm   7 sec   (4088 perm/sec)   p_kst 5.124000e-01   p_cons 3.853333e-02   p_joint 1.032667e-01

Joint ci ratio: 5.494720e-02	ci left: 1.097649e-01	ci right 1.159914e-01	k: 4514	n:40000
Cons ci ratio: 9.943475e-02	ci left: 3.553733e-02	ci right 3.928021e-02	k: 1495	n:40000
KS ci ratio: 1.900751e-02	ci left: 5.104139e-01	ci right 5.202338e-01	k: 20613	n:40000
MYO19   40000 perm   10 sec   (3964 perm/sec)   p_kst 5.153250e-01   p_cons 3.737500e-02   p_joint 1.128500e-01

Outputting figure to mutsig2_images.part000000000111/MYO19.5_3069_40000_0.51533_0.037375_0.11285.png
                gene_name: MYO19
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
MYOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
MYOC   10000 perm   2 sec   (5678 perm/sec)   p_kst 7.111000e-01   p_cons 7.281000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOC.5_1527_10000_0.7111_0.7281_1.png
                gene_name: MYOC
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
MYOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
KS ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
MYOD1   10000 perm   2 sec   (5915 perm/sec)   p_kst 9.700000e-01   p_cons 6.907000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOD1.5_975_10000_0.97_0.6907_1.png
                gene_name: MYOD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
MYOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
KS ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
MYOT   10000 perm   2 sec   (5349 perm/sec)   p_kst 9.410000e-02   p_cons 6.964000e-01   p_joint 1.804000e-01

Joint ci ratio: 6.270728e-02	ci left: 1.583001e-01	ci right 1.685980e-01	k: 3268	n:20000
Cons ci ratio: 1.783291e-02	ci left: 7.008890e-01	ci right 7.135507e-01	k: 14145	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
MYOT   20000 perm   4 sec   (4766 perm/sec)   p_kst 9.680000e-02   p_cons 7.072500e-01   p_joint 1.634000e-01

Outputting figure to mutsig2_images.part000000000111/MYOT.5_1533_20000_0.0968_0.70725_0.1634.png
                gene_name: MYOT
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 54 percent done.
N6AMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
N6AMT1   10000 perm   2 sec   (6651 perm/sec)   p_kst 1.544000e-01   p_cons 1.196000e-01   p_joint 1.163000e-01

Joint ci ratio: 6.271874e-02	ci left: 1.582507e-01	ci right 1.685473e-01	k: 3267	n:20000
Cons ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
KS ci ratio: 6.655758e-02	ci left: 1.428586e-01	ci right 1.527441e-01	k: 2955	n:20000
N6AMT1   20000 perm   3 sec   (5780 perm/sec)   p_kst 1.477500e-01   p_cons 1.168500e-01   p_joint 1.633500e-01

Outputting figure to mutsig2_images.part000000000111/N6AMT1.5_669_20000_0.14775_0.11685_0.16335.png
                gene_name: N6AMT1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 56 percent done.
NAA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
Cons ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
KS ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
NAA16   10000 perm   2 sec   (5105 perm/sec)   p_kst 4.367000e-01   p_cons 6.754000e-01   p_joint 7.024000e-01

Outputting figure to mutsig2_images.part000000000111/NAA16.5_2708_10000_0.4367_0.6754_0.7024.png
                gene_name: NAA16
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 57 percent done.
NAA25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
Cons ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
KS ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
NAA25   10000 perm   2 sec   (5206 perm/sec)   p_kst 5.013000e-01   p_cons 6.549000e-01   p_joint 6.592000e-01

Outputting figure to mutsig2_images.part000000000111/NAA25.5_3015_10000_0.5013_0.6549_0.6592.png
                gene_name: NAA25
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 59 percent done.
NAALADL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
Cons ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
KS ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
NAALADL1   10000 perm   2 sec   (5250 perm/sec)   p_kst 1.709000e-01   p_cons 2.576000e-01   p_joint 2.090000e-01

Outputting figure to mutsig2_images.part000000000111/NAALADL1.5_2295_10000_0.1709_0.2576_0.209.png
                gene_name: NAALADL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 60 percent done.
NAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
NAE1   10000 perm   2 sec   (5277 perm/sec)   p_kst 1.885000e-01   p_cons 2.550000e-02   p_joint 3.520000e-02

Joint ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
Cons ci ratio: 1.718684e-01	ci left: 2.316787e-02	ci right 2.757159e-02	k: 506	n:20000
KS ci ratio: 5.763387e-02	ci left: 1.824080e-01	ci right 1.932829e-01	k: 3756	n:20000
NAE1   20000 perm   4 sec   (4742 perm/sec)   p_kst 1.878000e-01   p_cons 2.530000e-02   p_joint 3.760000e-02

Joint ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
Cons ci ratio: 1.435090e-01	ci left: 2.252279e-02	ci right 2.603684e-02	k: 727	n:30000
KS ci ratio: 4.717922e-02	ci left: 1.826346e-01	ci right 1.914927e-01	k: 5611	n:30000
NAE1   30000 perm   7 sec   (4551 perm/sec)   p_kst 1.870333e-01   p_cons 2.423333e-02   p_joint 4.496667e-02

Joint ci ratio: 7.933374e-02	ci left: 5.523833e-02	ci right 5.982617e-02	k: 2300	n:40000
Cons ci ratio: 1.236102e-01	ci left: 2.300709e-02	ci right 2.606247e-02	k: 980	n:40000
KS ci ratio: 4.003672e-02	ci left: 1.894401e-01	ci right 1.972045e-01	k: 7732	n:40000
NAE1   40000 perm   9 sec   (4407 perm/sec)   p_kst 1.933000e-01   p_cons 2.450000e-02   p_joint 5.750000e-02

Joint ci ratio: 6.795381e-02	ci left: 6.027563e-02	ci right 6.453535e-02	k: 3119	n:50000
Cons ci ratio: 1.108040e-01	ci left: 2.306530e-02	ci right 2.579030e-02	k: 1220	n:50000
KS ci ratio: 3.586115e-02	ci left: 1.894096e-01	ci right 1.963461e-01	k: 9643	n:50000
NAE1   50000 perm   12 sec   (4280 perm/sec)   p_kst 1.928600e-01   p_cons 2.440000e-02   p_joint 6.238000e-02

Joint ci ratio: 6.176962e-02	ci left: 6.095378e-02	ci right 6.485529e-02	k: 3773	n:60000
Cons ci ratio: 1.016201e-01	ci left: 2.296888e-02	ci right 2.544410e-02	k: 1451	n:60000
KS ci ratio: 3.267857e-02	ci left: 1.902628e-01	ci right 1.966002e-01	k: 11605	n:60000
NAE1   60000 perm   14 sec   (4183 perm/sec)   p_kst 1.934167e-01   p_cons 2.418333e-02   p_joint 6.288333e-02

Joint ci ratio: 5.734064e-02	ci left: 6.078830e-02	ci right 6.439092e-02	k: 4380	n:70000
Cons ci ratio: 9.365798e-02	ci left: 2.326965e-02	ci right 2.557001e-02	k: 1708	n:70000
KS ci ratio: 3.024526e-02	ci left: 1.905934e-01	ci right 1.964606e-01	k: 13546	n:70000
NAE1   70000 perm   17 sec   (4088 perm/sec)   p_kst 1.935143e-01   p_cons 2.440000e-02   p_joint 6.257143e-02

Outputting figure to mutsig2_images.part000000000111/NAE1.5_1724_70000_0.19351_0.0244_0.062571.png
                gene_name: NAE1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 62 percent done.
MYO1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
MYO1E   10000 perm   2 sec   (4812 perm/sec)   p_kst 3.887000e-01   p_cons 5.357000e-01   p_joint 4.176000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1E.4_3439_10000_0.3887_0.5357_0.4176.png
                gene_name: MYO1E
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 63 percent done.
MYO1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
Cons ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
KS ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
MYO1F   10000 perm   2 sec   (4838 perm/sec)   p_kst 5.637000e-01   p_cons 7.301000e-01   p_joint 7.363000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1F.4_3409_10000_0.5637_0.7301_0.7363.png
                gene_name: MYO1F
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 65 percent done.
MYO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
MYO6   10000 perm   2 sec   (4711 perm/sec)   p_kst 5.965000e-01   p_cons 2.516000e-01   p_joint 7.145000e-01

Outputting figure to mutsig2_images.part000000000111/MYO6.4_3994_10000_0.5965_0.2516_0.7145.png
                gene_name: MYO6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 67 percent done.
MYOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.165997e-02	ci left: 7.576765e-01	ci right 7.743683e-01	k: 7661	n:10000
Cons ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
KS ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
MYOM1   10000 perm   2 sec   (4091 perm/sec)   p_kst 3.887000e-01   p_cons 8.464000e-01   p_joint 7.661000e-01

Outputting figure to mutsig2_images.part000000000111/MYOM1.4_5206_10000_0.3887_0.8464_0.7661.png
                gene_name: MYOM1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 68 percent done.
MYOZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
KS ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
MYOZ2   10000 perm   2 sec   (5921 perm/sec)   p_kst 9.920000e-02   p_cons 5.045000e-01   p_joint 1.661000e-01

Joint ci ratio: 5.796656e-02	ci left: 1.806777e-01	ci right 1.915137e-01	k: 3721	n:20000
Cons ci ratio: 2.755348e-02	ci left: 4.959956e-01	ci right 5.099035e-01	k: 10059	n:20000
KS ci ratio: 8.557586e-02	ci left: 9.087233e-02	ci right 9.904586e-02	k: 1898	n:20000
MYOZ2   20000 perm   4 sec   (5241 perm/sec)   p_kst 9.490000e-02   p_cons 5.029500e-01   p_joint 1.860500e-01

Outputting figure to mutsig2_images.part000000000111/MYOZ2.4_815_20000_0.0949_0.50295_0.18605.png
                gene_name: MYOZ2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 70 percent done.
MYST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
MYST2   10000 perm   2 sec   (5642 perm/sec)   p_kst 9.395000e-01   p_cons 4.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYST2.4_1896_10000_0.9395_0.4745_1.png
                gene_name: MYST2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
N4BP2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
Cons ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KS ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
N4BP2L2   10000 perm   2 sec   (5021 perm/sec)   p_kst 1.848000e-01   p_cons 3.028000e-01   p_joint 2.334000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2L2.4_3633_10000_0.1848_0.3028_0.2334.png
                gene_name: N4BP2L2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 73 percent done.
NAA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
Cons ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
KS ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
NAA11   10000 perm   2 sec   (6463 perm/sec)   p_kst 8.610000e-02   p_cons 6.028000e-01   p_joint 1.164000e-01

Joint ci ratio: 6.964153e-02	ci left: 1.319671e-01	ci right 1.415388e-01	k: 2734	n:20000
Cons ci ratio: 2.190933e-02	ci left: 6.086663e-01	ci right 6.222001e-01	k: 12309	n:20000
KS ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
NAA11   20000 perm   3 sec   (5717 perm/sec)   p_kst 8.730000e-02   p_cons 6.154500e-01   p_joint 1.367000e-01

Outputting figure to mutsig2_images.part000000000111/NAA11.4_694_20000_0.0873_0.61545_0.1367.png
                gene_name: NAA11
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 75 percent done.
NAA15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
NAA15   10000 perm   2 sec   (5051 perm/sec)   p_kst 1.740000e-02   p_cons 6.686000e-01   p_joint 3.980000e-02

Joint ci ratio: 1.443714e-01	ci left: 3.297824e-02	ci right 3.815792e-02	k: 710	n:20000
Cons ci ratio: 1.973464e-02	ci left: 6.570035e-01	ci right 6.701489e-01	k: 13272	n:20000
KS ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
NAA15   20000 perm   4 sec   (4514 perm/sec)   p_kst 1.555000e-02   p_cons 6.636000e-01   p_joint 3.550000e-02

Joint ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
Cons ci ratio: 1.619655e-02	ci left: 6.559125e-01	ci right 6.666563e-01	k: 19839	n:30000
KS ci ratio: 1.827789e-01	ci left: 1.371864e-02	ci right 1.650975e-02	k: 452	n:30000
NAA15   30000 perm   7 sec   (4319 perm/sec)   p_kst 1.506667e-02   p_cons 6.613000e-01   p_joint 3.243333e-02

Joint ci ratio: 8.964153e-02	ci left: 4.357615e-02	ci right 4.769014e-02	k: 1824	n:40000
Cons ci ratio: 1.401732e-02	ci left: 6.569390e-01	ci right 6.662376e-01	k: 26464	n:40000
KS ci ratio: 1.610203e-01	ci left: 1.342339e-02	ci right 1.579784e-02	k: 583	n:40000
NAA15   40000 perm   10 sec   (4193 perm/sec)   p_kst 1.457500e-02   p_cons 6.616000e-01   p_joint 4.560000e-02

Joint ci ratio: 9.837254e-02	ci left: 2.926383e-02	ci right 3.231097e-02	k: 1538	n:50000
Cons ci ratio: 1.215037e-02	ci left: 6.713761e-01	ci right 6.796035e-01	k: 33775	n:50000
KS ci ratio: 1.434243e-01	ci left: 1.366336e-02	ci right 1.579353e-02	k: 735	n:50000
NAA15   50000 perm   12 sec   (4095 perm/sec)   p_kst 1.470000e-02   p_cons 6.755000e-01   p_joint 3.076000e-02

Joint ci ratio: 8.495712e-02	ci left: 3.280899e-02	ci right 3.573629e-02	k: 2055	n:60000
Cons ci ratio: 1.110778e-02	ci left: 6.711018e-01	ci right 6.786146e-01	k: 40492	n:60000
KS ci ratio: 1.307929e-01	ci left: 1.378448e-02	ci right 1.572954e-02	k: 884	n:60000
NAA15   60000 perm   15 sec   (4005 perm/sec)   p_kst 1.473333e-02   p_cons 6.748667e-01   p_joint 3.425000e-02

Joint ci ratio: 9.127709e-02	ci left: 2.449842e-02	ci right 2.685541e-02	k: 1796	n:70000
Cons ci ratio: 1.027467e-02	ci left: 6.717738e-01	ci right 6.787260e-01	k: 47268	n:70000
KS ci ratio: 1.211802e-01	ci left: 1.383533e-02	ci right 1.563379e-02	k: 1030	n:70000
NAA15   70000 perm   18 sec   (3924 perm/sec)   p_kst 1.471429e-02   p_cons 6.752571e-01   p_joint 2.565714e-02

Joint ci ratio: 8.907242e-02	ci left: 2.258361e-02	ci right 2.470113e-02	k: 1890	n:80000
Cons ci ratio: 9.632342e-03	ci left: 6.710275e-01	ci right 6.775348e-01	k: 53943	n:80000
KS ci ratio: 1.163089e-01	ci left: 1.318512e-02	ci right 1.482541e-02	k: 1119	n:80000
NAA15   80000 perm   21 sec   (3849 perm/sec)   p_kst 1.398750e-02   p_cons 6.742875e-01   p_joint 2.362500e-02

Joint ci ratio: 7.599968e-02	ci left: 2.761886e-02	ci right 2.981166e-02	k: 2583	n:90000
Cons ci ratio: 9.092008e-03	ci left: 6.707037e-01	ci right 6.768407e-01	k: 60640	n:90000
KS ci ratio: 1.098341e-01	ci left: 1.318850e-02	ci right 1.473195e-02	k: 1255	n:90000
NAA15   90000 perm   24 sec   (3769 perm/sec)   p_kst 1.394444e-02   p_cons 6.737778e-01   p_joint 2.870000e-02

Joint ci ratio: 7.490076e-02	ci left: 2.566052e-02	ci right 2.766707e-02	k: 2665	n:100000
Cons ci ratio: 8.623045e-03	ci left: 6.709845e-01	ci right 6.768054e-01	k: 67390	n:100000
KS ci ratio: 1.038046e-01	ci left: 1.332964e-02	ci right 1.479874e-02	k: 1405	n:100000
NAA15   100000 perm   27 sec   (3700 perm/sec)   p_kst 1.405000e-02   p_cons 6.739000e-01   p_joint 2.665000e-02

Joint ci ratio: 6.940582e-02	ci left: 2.720281e-02	ci right 2.916762e-02	k: 3099	n:110000
Cons ci ratio: 8.221586e-03	ci left: 6.711297e-01	ci right 6.766793e-01	k: 74130	n:110000
KS ci ratio: 9.915607e-02	ci left: 1.331398e-02	ci right 1.471182e-02	k: 1540	n:110000
NAA15   110000 perm   30 sec   (3640 perm/sec)   p_kst 1.400000e-02   p_cons 6.739091e-01   p_joint 2.817273e-02

Outputting figure to mutsig2_images.part000000000111/NAA15.4_2681_110000_0.014_0.67391_0.028173.png
                gene_name: NAA15
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 76 percent done.
NAIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
NAIF1   10000 perm   2 sec   (6168 perm/sec)   p_kst 7.101000e-01   p_cons 5.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAIF1.4_992_10000_0.7101_0.5184_1.png
                gene_name: NAIF1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MYRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
Cons ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
MYRIP   10000 perm   2 sec   (5309 perm/sec)   p_kst 3.728000e-01   p_cons 7.022000e-01   p_joint 5.613000e-01

Outputting figure to mutsig2_images.part000000000111/MYRIP.3_2644_10000_0.3728_0.7022_0.5613.png
                gene_name: MYRIP
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 79 percent done.
NACA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
KS ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
NACA2   10000 perm   2 sec   (6500 perm/sec)   p_kst 9.594000e-01   p_cons 9.646000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NACA2.3_652_10000_0.9594_0.9646_1.png
                gene_name: NACA2
               theta_stop: 0.0081 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
NAGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
Cons ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
KS ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
NAGA   10000 perm   2 sec   (6335 perm/sec)   p_kst 6.002000e-01   p_cons 7.847000e-01   p_joint 7.030000e-01

Outputting figure to mutsig2_images.part000000000111/NAGA.3_1272_10000_0.6002_0.7847_0.703.png
                gene_name: NAGA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 83 percent done.
MYO1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
Cons ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
KS ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
MYO1C   10000 perm   2 sec   (5308 perm/sec)   p_kst 9.497000e-01   p_cons 9.370000e-02   p_joint 5.707000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.592627e-02	ci left: 9.018588e-02	ci right 9.833252e-02	k: 1884	n:20000
KS ci ratio: 6.504179e-03	ci left: 9.446780e-01	ci right 9.508910e-01	k: 18957	n:20000
MYO1C   20000 perm   4 sec   (4651 perm/sec)   p_kst 9.478500e-01   p_cons 9.420000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO1C.2_3342_20000_0.94785_0.0942_1.png
                gene_name: MYO1C
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MYO5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
Cons ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KS ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
MYO5C   10000 perm   2 sec   (4409 perm/sec)   p_kst 1.852000e-01   p_cons 8.037000e-01   p_joint 9.633000e-01

Outputting figure to mutsig2_images.part000000000111/MYO5C.2_5393_10000_0.1852_0.8037_0.9633.png
                gene_name: MYO5C
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 86 percent done.
MYOZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
KS ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
MYOZ1   10000 perm   1 sec   (6763 perm/sec)   p_kst 7.888000e-01   p_cons 8.999000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOZ1.2_920_10000_0.7888_0.8999_1.png
                gene_name: MYOZ1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
MYSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
Cons ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KS ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
MYSM1   10000 perm   2 sec   (5699 perm/sec)   p_kst 2.266000e-01   p_cons 1.338000e-01   p_joint 2.991000e-01

Outputting figure to mutsig2_images.part000000000111/MYSM1.2_2567_10000_0.2266_0.1338_0.2991.png
                gene_name: MYSM1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 89 percent done.
N4BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
KS ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
N4BP3   10000 perm   2 sec   (6518 perm/sec)   p_kst 8.616000e-01   p_cons 3.094000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/N4BP3.2_1651_10000_0.8616_0.3094_1.png
                gene_name: N4BP3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
N6AMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.327990e-02	ci left: 8.909790e-01	ci right 9.029887e-01	k: 8971	n:10000
KS ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
N6AMT2   10000 perm   1 sec   (7315 perm/sec)   p_kst 4.820000e-01   p_cons 8.971000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/N6AMT2.2_661_10000_0.482_0.8971_1.png
                gene_name: N6AMT2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
NAA20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
Cons ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
KS ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
NAA20   10000 perm   1 sec   (7043 perm/sec)   p_kst 7.730000e-01   p_cons 3.784000e-01   p_joint 9.224000e-01

Outputting figure to mutsig2_images.part000000000111/NAA20.2_582_10000_0.773_0.3784_0.9224.png
                gene_name: NAA20
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 94 percent done.
NADK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
KS ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
NADK   10000 perm   1 sec   (6727 perm/sec)   p_kst 5.356000e-01   p_cons 1.833000e-01   p_joint 1.912000e-01

Outputting figure to mutsig2_images.part000000000111/NADK.2_1385_10000_0.5356_0.1833_0.1912.png
                gene_name: NADK
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 95 percent done.
NAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
Cons ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
NAF1   10000 perm   2 sec   (6589 perm/sec)   p_kst 4.060000e-01   p_cons 1.013000e-01   p_joint 1.162000e-01

Joint ci ratio: 6.458270e-02	ci left: 1.505031e-01	ci right 1.605973e-01	k: 3110	n:20000
Cons ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
KS ci ratio: 3.340994e-02	ci left: 4.008285e-01	ci right 4.144983e-01	k: 8153	n:20000
NAF1   20000 perm   4 sec   (5699 perm/sec)   p_kst 4.076500e-01   p_cons 1.102000e-01   p_joint 1.555000e-01

Outputting figure to mutsig2_images.part000000000111/NAF1.2_1658_20000_0.40765_0.1102_0.1555.png
                gene_name: NAF1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 97 percent done.
NAMPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
Cons ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
NAMPT   10000 perm   2 sec   (6308 perm/sec)   p_kst 4.050000e-02   p_cons 3.038000e-01   p_joint 2.353000e-01

Joint ci ratio: 1.336617e-02	ci left: 8.058578e-01	ci right 8.167515e-01	k: 16227	n:20000
Cons ci ratio: 4.199048e-02	ci left: 2.970823e-01	ci right 3.098749e-01	k: 6069	n:20000
KS ci ratio: 1.374079e-01	ci left: 3.640751e-02	ci right 4.182754e-02	k: 781	n:20000
NAMPT   20000 perm   4 sec   (5386 perm/sec)   p_kst 3.905000e-02   p_cons 3.034500e-01   p_joint 8.113500e-01

Joint ci ratio: 1.285986e-02	ci left: 7.510315e-01	ci right 7.607856e-01	k: 22678	n:30000
Cons ci ratio: 3.446436e-02	ci left: 2.960776e-01	ci right 3.064942e-01	k: 9038	n:30000
KS ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
NAMPT   30000 perm   6 sec   (5089 perm/sec)   p_kst 3.950000e-02   p_cons 3.012667e-01   p_joint 7.559333e-01

Joint ci ratio: 1.115232e-02	ci left: 7.511817e-01	ci right 7.596311e-01	k: 30217	n:40000
Cons ci ratio: 2.990917e-02	ci left: 2.959096e-01	ci right 3.049194e-01	k: 12016	n:40000
KS ci ratio: 9.674552e-02	ci left: 3.751450e-02	ci right 4.135273e-02	k: 1576	n:40000
NAMPT   40000 perm   8 sec   (4898 perm/sec)   p_kst 3.940000e-02   p_cons 3.004000e-01   p_joint 7.554250e-01

Outputting figure to mutsig2_images.part000000000111/NAMPT.2_1520_40000_0.0394_0.3004_0.75543.png
                gene_name: NAMPT
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 98 percent done.
NANS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
NANS   10000 perm   2 sec   (6369 perm/sec)   p_kst 2.693000e-01   p_cons 9.300000e-02   p_joint 4.301000e-01

Joint ci ratio: 4.112757e-02	ci left: 3.058799e-01	ci right 3.187747e-01	k: 6246	n:20000
Cons ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
KS ci ratio: 4.533566e-02	ci left: 2.658910e-01	ci right 2.782753e-01	k: 5441	n:20000
NANS   20000 perm   4 sec   (5608 perm/sec)   p_kst 2.720500e-01   p_cons 9.365000e-02   p_joint 3.123000e-01

Outputting figure to mutsig2_images.part000000000111/NANS.2_1104_20000_0.27205_0.09365_0.3123.png
                gene_name: NANS
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000111
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 111 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1528>
Subject: Job 4422214: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1528>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000112> was used as the working directory.
Started at Wed Oct 24 18:00:44 2012
Results reported at Wed Oct 24 18:58:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000112.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000112.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 112  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000112.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3843.36 sec.
    Max Memory :      5384 MB
    Max Swap   :      7697 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
112
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 112
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 112: processing genes 10043 - 10133
Calculating significance of each gene.
Using projection method.
10043	NAP1L3	3.422947e-01
10044	NAP1L4	7.088481e-01
10045	NAP1L5	2.146964e-01
10046	NAPA	1
10047	NAPB	3.509933e-01
10048	NAPEPLD	4.001360e-01
10049	NAPG	1
10050	NAPRT1	7.848932e-01
10051	NAPSA	8.137313e-01
10052	NARF	2.473619e-01
10053	NARFL	6.236764e-01
10054	NARG2	9.673833e-01
10055	NARS	6.583382e-01
10056	NARS2	5.858968e-01
10057	NASP	8.608468e-01
10058	NAT1	1.656331e-01
10059	NAT10	9.941106e-01
10060	NAT15	4.067110e-01
10061	NAT2	4.241899e-01
10062	NAT6	7.297728e-01
10063	NAT8	6.555066e-01
10064	NAT8B	2.759849e-02
10065	NAT8L	1
10066	NAT9	1
10067	NAV1	1
10068	NAV2	9.999892e-01
10069	NAV3	1.066924e-13
10070	NBAS	9.938167e-01
10071	NBEA	9.999940e-01
10072	NBEAL1	9.822889e-01
10073	NBEAL2	9.990533e-01
10074	NBL1	3.124232e-01
10075	NBN	7.598088e-01
10076	NBPF1	3.898682e-01
10077	NBPF10	6.296752e-01
10078	NBPF14	1.388402e-01
10079	NBPF15	5.578662e-01
10080	NBPF16	1
10081	NBPF3	9.782152e-01
10082	NBPF7	1.878628e-01
10083	NBPF9	7.909019e-01
10084	NBR1	9.665468e-01
10085	NCALD	3.942848e-01
10086	NCAM1	8.761610e-01
10087	NCAM2	6.895854e-02
10088	NCAN	1
10089	NCAPD2	9.997443e-01
10090	NCAPD3	1
10091	NCAPG	7.179667e-01
10092	NCAPG2	9.155990e-01
10093	NCAPH	8.800681e-03
10094	NCAPH2	2.382809e-01
10095	NCBP1	1
10096	NCBP2	3.942077e-01
10097	NCCRP1	3.832003e-01
10098	NCDN	9.942562e-01
10099	NCEH1	9.404263e-01
10100	NCF1	5.622445e-01
10101	NCF2	1
10102	NCF4	5.930693e-01
10103	NCK1	4.048430e-01
10104	NCK2	7.170941e-01
10105	NCKAP1	9.179748e-01
10106	NCKAP1L	1.504878e-01
10107	NCKAP5	9.747391e-01
10108	NCKAP5L	8.324049e-01
10109	NCKIPSD	1
10110	NCL	8.040858e-01
10111	NCLN	9.129889e-01
10112	NCOA1	1
In gene NCOA2 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 4398    n = 1	mu =   3.68e-07
10113	NCOA2	9.770486e-01
10114	NCOA3	1
10115	NCOA4	9.221308e-01
10116	NCOA5	1
10117	NCOA6	1
10118	NCOA7	7.177763e-01
10119	NCOR1	9.994747e-01
In gene NCOR2 the following bins exceed PROBCAP:
    LUAD-17-Z054-TP	categ 6	N = 5694    n = 1	mu =   6.69e-08
10120	NCOR2	9.576039e-01
10121	NCR1	5.389197e-01
10122	NCR2	1
10123	NCR3	4.740400e-01
10124	NCS1	3.933851e-01
10125	NCSTN	1
10126	NDC80	1
10127	NDE1	5.730847e-01
10128	NDEL1	5.164517e-01
10129	NDFIP1	1
10130	NDFIP2	4.234105e-01
10131	NDN	4.716930e-02
10132	NDNL2	8.887443e-01
10133	NDOR1	9.838334e-01
Done

Running MutSig 2:
Scatter job 112: processing genes 10043 - 10133
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
Cons ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
KS ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
NAV3   10000 perm   5 sec   (1930 perm/sec)   p_kst 3.229000e-01   p_cons 4.782000e-01   p_joint 4.036000e-01

Outputting figure to mutsig2_images.part000000000112/NAV3.66_7248_10000_0.3229_0.4782_0.4036.png
                gene_name: NAV3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
NCKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.356693e-02	ci left: 4.375213e-01	ci right 4.571094e-01	k: 4473	n:10000
Cons ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
KS ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
NCKAP5   10000 perm   3 sec   (3002 perm/sec)   p_kst 4.333000e-01   p_cons 2.540000e-01   p_joint 4.473000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP5.28_5802_10000_0.4333_0.254_0.4473.png
                gene_name: NCKAP5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 3 percent done.
NAV2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
Cons ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
NAV2   10000 perm   3 sec   (3022 perm/sec)   p_kst 7.010000e-02   p_cons 1.849000e-01   p_joint 9.460000e-02

Joint ci ratio: 9.271124e-02	ci left: 7.823353e-02	ci right 8.588850e-02	k: 1640	n:20000
Cons ci ratio: 5.845918e-02	ci left: 1.781568e-01	ci right 1.889354e-01	k: 3670	n:20000
KS ci ratio: 1.028597e-01	ci left: 6.420742e-02	ci right 7.121890e-02	k: 1353	n:20000
NAV2   20000 perm   7 sec   (2806 perm/sec)   p_kst 6.765000e-02   p_cons 1.835000e-01   p_joint 8.200000e-02

Joint ci ratio: 9.131898e-02	ci left: 5.521814e-02	ci right 6.053455e-02	k: 1735	n:30000
Cons ci ratio: 4.784638e-02	ci left: 1.784406e-01	ci right 1.872209e-01	k: 5484	n:30000
KS ci ratio: 8.518353e-02	ci left: 6.311792e-02	ci right 6.876649e-02	k: 1977	n:30000
NAV2   30000 perm   11 sec   (2709 perm/sec)   p_kst 6.590000e-02   p_cons 1.828000e-01   p_joint 5.783333e-02

Outputting figure to mutsig2_images.part000000000112/NAV2.16_7560_30000_0.0659_0.1828_0.057833.png
                gene_name: NAV2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.061 

Current progress: 5 percent done.
NBAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
NBAS   10000 perm   4 sec   (2754 perm/sec)   p_kst 2.374000e-01   p_cons 3.610000e-01   p_joint 3.242000e-01

Outputting figure to mutsig2_images.part000000000112/NBAS.17_7324_10000_0.2374_0.361_0.3242.png
                gene_name: NBAS
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
NBEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
Cons ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
KS ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
NBEA   10000 perm   4 sec   (2592 perm/sec)   p_kst 5.173000e-01   p_cons 7.957000e-01   p_joint 8.938000e-01

Outputting figure to mutsig2_images.part000000000112/NBEA.16_9073_10000_0.5173_0.7957_0.8938.png
                gene_name: NBEA
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
NBPF10
Processing conservation and coverage...
90% 
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
Cons ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
KS ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
NBPF10   10000 perm   4 sec   (2533 perm/sec)   p_kst 5.530000e-02   p_cons 8.608000e-01   p_joint 1.151000e-01

Joint ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
Cons ci ratio: 1.145707e-02	ci left: 8.491312e-01	ci right 8.589656e-01	k: 17082	n:20000
KS ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
NBPF10   20000 perm   9 sec   (2348 perm/sec)   p_kst 5.415000e-02   p_cons 8.541000e-01   p_joint 9.250000e-02

Joint ci ratio: 6.253758e-02	ci left: 1.121669e-01	ci right 1.194410e-01	k: 3473	n:30000
Cons ci ratio: 9.456789e-03	ci left: 8.472906e-01	ci right 8.553745e-01	k: 25541	n:30000
KS ci ratio: 9.566566e-02	ci left: 5.045901e-02	ci right 5.556133e-02	k: 1589	n:30000
NBPF10   30000 perm   13 sec   (2258 perm/sec)   p_kst 5.296667e-02   p_cons 8.513667e-01   p_joint 1.157667e-01

Outputting figure to mutsig2_images.part000000000112/NBPF10.10_10996_30000_0.052967_0.85137_0.11577.png
                gene_name: NBPF10
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 9 percent done.
NBPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
NBPF1   10000 perm   3 sec   (3879 perm/sec)   p_kst 4.000000e-04   p_cons 7.792000e-01   p_joint 1.300000e-02

Joint ci ratio: 4.033559e-01	ci left: 3.754742e-03	ci right 5.693581e-03	k: 93	n:20000
Cons ci ratio: 1.460518e-02	ci left: 7.769185e-01	ci right 7.883992e-01	k: 15654	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
NBPF1   20000 perm   6 sec   (3574 perm/sec)   p_kst 3.500000e-04   p_cons 7.827000e-01   p_joint 4.650000e-03

Joint ci ratio: 4.058478e-01	ci left: 2.472860e-03	ci right 3.759688e-03	k: 92	n:30000
Cons ci ratio: 1.228079e-02	ci left: 7.677468e-01	ci right 7.772670e-01	k: 23176	n:30000
KS ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
NBPF1   30000 perm   9 sec   (3444 perm/sec)   p_kst 5.333333e-04   p_cons 7.725333e-01   p_joint 3.066667e-03

Joint ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
Cons ci ratio: 1.065539e-02	ci left: 7.677306e-01	ci right 7.759799e-01	k: 30875	n:40000
KS ci ratio: 7.837452e-01	ci left: 3.844680e-04	ci right 8.926218e-04	k: 24	n:40000
NBPF1   40000 perm   12 sec   (3374 perm/sec)   p_kst 6.000000e-04   p_cons 7.718750e-01   p_joint 3.125000e-03

Joint ci ratio: 3.750547e-01	ci left: 1.772216e-03	ci right 2.607270e-03	k: 108	n:50000
Cons ci ratio: 9.178404e-03	ci left: 7.812317e-01	ci right 7.884552e-01	k: 39243	n:50000
KS ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
NBPF1   50000 perm   15 sec   (3304 perm/sec)   p_kst 6.800000e-04   p_cons 7.848600e-01   p_joint 2.160000e-03

Joint ci ratio: 2.220633e-01	ci left: 4.592973e-03	ci right 5.755681e-03	k: 309	n:60000
Cons ci ratio: 8.389691e-03	ci left: 7.811042e-01	ci right 7.877016e-01	k: 47065	n:60000
KS ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
NBPF1   60000 perm   18 sec   (3243 perm/sec)   p_kst 6.833333e-04   p_cons 7.844167e-01   p_joint 5.150000e-03

Joint ci ratio: 2.265940e-01	ci left: 3.774852e-03	ci right 4.752658e-03	k: 297	n:70000
Cons ci ratio: 7.775924e-03	ci left: 7.809757e-01	ci right 7.870864e-01	k: 54883	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
NBPF1   70000 perm   22 sec   (3193 perm/sec)   p_kst 8.285714e-04   p_cons 7.840429e-01   p_joint 4.242857e-03

Joint ci ratio: 2.140433e-01	ci left: 3.728168e-03	ci right 4.633370e-03	k: 333	n:80000
Cons ci ratio: 7.267380e-03	ci left: 7.814710e-01	ci right 7.871834e-01	k: 62747	n:80000
KS ci ratio: 4.898009e-01	ci left: 6.051880e-04	ci right 1.007444e-03	k: 63	n:80000
NBPF1   80000 perm   25 sec   (3146 perm/sec)   p_kst 7.875000e-04   p_cons 7.843375e-01   p_joint 4.162500e-03

Joint ci ratio: 2.131347e-01	ci left: 3.345405e-03	ci right 4.153766e-03	k: 336	n:90000
Cons ci ratio: 6.848009e-03	ci left: 7.818214e-01	ci right 7.872047e-01	k: 70607	n:90000
KS ci ratio: 4.650323e-01	ci left: 6.063646e-04	ci right 9.825747e-04	k: 70	n:90000
NBPF1   90000 perm   29 sec   (3100 perm/sec)   p_kst 7.777778e-04   p_cons 7.845222e-01   p_joint 3.733333e-03

Joint ci ratio: 2.109873e-01	ci left: 3.077101e-03	ci right 3.812166e-03	k: 343	n:100000
Cons ci ratio: 6.504702e-03	ci left: 7.815367e-01	ci right 7.866469e-01	k: 78410	n:100000
KS ci ratio: 4.408580e-01	ci left: 6.166049e-04	ci right 9.733811e-04	k: 78	n:100000
NBPF1   100000 perm   33 sec   (3055 perm/sec)   p_kst 7.800000e-04   p_cons 7.841000e-01   p_joint 3.430000e-03

Joint ci ratio: 2.135257e-01	ci left: 2.728449e-03	ci right 3.389092e-03	k: 335	n:110000
Cons ci ratio: 6.194662e-03	ci left: 7.820582e-01	ci right 7.869268e-01	k: 86295	n:110000
KS ci ratio: 4.301116e-01	ci left: 5.929247e-04	ci right 9.252224e-04	k: 82	n:110000
NBPF1   110000 perm   36 sec   (3015 perm/sec)   p_kst 7.454545e-04   p_cons 7.845000e-01   p_joint 3.045455e-03

Joint ci ratio: 2.037522e-01	ci left: 2.761721e-03	ci right 3.396004e-03	k: 368	n:120000
Cons ci ratio: 5.932837e-03	ci left: 7.820539e-01	ci right 7.867157e-01	k: 94127	n:120000
KS ci ratio: 4.107701e-01	ci left: 6.031304e-04	ci right 9.217981e-04	k: 90	n:120000
NBPF1   120000 perm   40 sec   (2977 perm/sec)   p_kst 7.500000e-04   p_cons 7.843917e-01   p_joint 3.066667e-03

Joint ci ratio: 2.129417e-01	ci left: 2.323198e-03	ci right 2.883972e-03	k: 337	n:130000
Cons ci ratio: 5.687757e-03	ci left: 7.828801e-01	ci right 7.873533e-01	k: 102066	n:130000
KS ci ratio: 3.958290e-01	ci left: 6.051209e-04	ci right 9.101697e-04	k: 97	n:130000
NBPF1   130000 perm   44 sec   (2941 perm/sec)   p_kst 7.461538e-04   p_cons 7.851231e-01   p_joint 2.592308e-03

Joint ci ratio: 2.074945e-01	ci left: 2.279053e-03	ci right 2.813311e-03	k: 355	n:140000
Cons ci ratio: 5.673995e-03	ci left: 7.710044e-01	ci right 7.753986e-01	k: 108249	n:140000
KS ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
NBPF1   140000 perm   48 sec   (2905 perm/sec)   p_kst 7.714286e-04   p_cons 7.732071e-01   p_joint 2.535714e-03

Joint ci ratio: 1.707826e-01	ci left: 3.201051e-03	ci right 3.805058e-03	k: 524	n:150000
Cons ci ratio: 5.485046e-03	ci left: 7.708582e-01	ci right 7.751046e-01	k: 115948	n:150000
KS ci ratio: 3.518797e-01	ci left: 6.815451e-04	ci right 9.782986e-04	k: 123	n:150000
NBPF1   150000 perm   52 sec   (2869 perm/sec)   p_kst 8.200000e-04   p_cons 7.729867e-01   p_joint 3.493333e-03

Joint ci ratio: 1.685612e-01	ci left: 3.084754e-03	ci right 3.658475e-03	k: 538	n:160000
Cons ci ratio: 5.310955e-03	ci left: 7.709206e-01	ci right 7.750320e-01	k: 123677	n:160000
KS ci ratio: 3.397647e-01	ci left: 6.903150e-04	ci right 9.782697e-04	k: 132	n:160000
NBPF1   160000 perm   57 sec   (2827 perm/sec)   p_kst 8.250000e-04   p_cons 7.729812e-01   p_joint 3.362500e-03

Joint ci ratio: 1.637707e-01	ci left: 3.083705e-03	ci right 3.639327e-03	k: 570	n:170000
Cons ci ratio: 5.151503e-03	ci left: 7.710425e-01	ci right 7.750306e-01	k: 131417	n:170000
KS ci ratio: 3.335561e-01	ci left: 6.766331e-04	ci right 9.526148e-04	k: 137	n:170000
NBPF1   170000 perm   61 sec   (2793 perm/sec)   p_kst 8.058824e-04   p_cons 7.730412e-01   p_joint 3.352941e-03

Joint ci ratio: 1.579278e-01	ci left: 3.141671e-03	ci right 3.685627e-03	k: 613	n:180000
Cons ci ratio: 5.011942e-03	ci left: 7.707066e-01	ci right 7.745846e-01	k: 139077	n:180000
KS ci ratio: 3.210051e-01	ci left: 6.951357e-04	ci right 9.658030e-04	k: 148	n:180000
NBPF1   180000 perm   65 sec   (2762 perm/sec)   p_kst 8.222222e-04   p_cons 7.726500e-01   p_joint 3.405556e-03

Joint ci ratio: 1.628019e-01	ci left: 2.794407e-03	ci right 3.294630e-03	k: 577	n:190000
Cons ci ratio: 4.883052e-03	ci left: 7.704129e-01	ci right 7.741893e-01	k: 146738	n:190000
KS ci ratio: 3.178259e-01	ci left: 6.730720e-04	ci right 9.320246e-04	k: 151	n:190000
NBPF1   190000 perm   70 sec   (2730 perm/sec)   p_kst 7.947368e-04   p_cons 7.723053e-01   p_joint 3.036842e-03

Joint ci ratio: 1.467496e-01	ci left: 3.294058e-03	ci right 3.820493e-03	k: 710	n:200000
Cons ci ratio: 4.446775e-03	ci left: 7.935400e-01	ci right 7.970815e-01	k: 159063	n:200000
KS ci ratio: 3.097785e-01	ci left: 6.762692e-04	ci right 9.285627e-04	k: 159	n:200000
NBPF1   200000 perm   74 sec   (2698 perm/sec)   p_kst 7.950000e-04   p_cons 7.953150e-01   p_joint 3.550000e-03

Joint ci ratio: 1.461446e-01	ci left: 3.164707e-03	ci right 3.668202e-03	k: 716	n:210000
Cons ci ratio: 4.343425e-03	ci left: 7.932956e-01	ci right 7.967534e-01	k: 166956	n:210000
KS ci ratio: 3.023128e-01	ci left: 6.792365e-04	ci right 9.253566e-04	k: 167	n:210000
NBPF1   210000 perm   79 sec   (2667 perm/sec)   p_kst 7.952381e-04   p_cons 7.950286e-01   p_joint 3.409524e-03

Joint ci ratio: 1.466700e-01	ci left: 2.998943e-03	ci right 3.477930e-03	k: 711	n:220000
Cons ci ratio: 4.241271e-03	ci left: 7.935121e-01	ci right 7.968892e-01	k: 174945	n:220000
KS ci ratio: 2.953622e-01	ci left: 6.820002e-04	ci right 9.223763e-04	k: 175	n:220000
NBPF1   220000 perm   83 sec   (2638 perm/sec)   p_kst 7.954545e-04   p_cons 7.952045e-01   p_joint 3.231818e-03

Joint ci ratio: 1.441632e-01	ci left: 2.973292e-03	ci right 3.439367e-03	k: 736	n:230000
Cons ci ratio: 4.149985e-03	ci left: 7.933966e-01	ci right 7.967003e-01	k: 182862	n:230000
KS ci ratio: 2.888700e-01	ci left: 6.845825e-04	ci right 9.195967e-04	k: 183	n:230000
NBPF1   230000 perm   88 sec   (2609 perm/sec)   p_kst 7.956522e-04   p_cons 7.950522e-01   p_joint 3.200000e-03

Joint ci ratio: 1.411319e-01	ci left: 2.977980e-03	ci right 3.434148e-03	k: 768	n:240000
Cons ci ratio: 4.065699e-03	ci left: 7.931828e-01	ci right 7.964184e-01	k: 190753	n:240000
KS ci ratio: 2.820537e-01	ci left: 6.908743e-04	ci right 9.214570e-04	k: 192	n:240000
NBPF1   240000 perm   93 sec   (2581 perm/sec)   p_kst 8.000000e-04   p_cons 7.948042e-01   p_joint 3.200000e-03

Joint ci ratio: 1.245282e-01	ci left: 3.702075e-03	ci right 4.197534e-03	k: 986	n:250000
Cons ci ratio: 3.984632e-03	ci left: 7.931273e-01	ci right 7.962979e-01	k: 198679	n:250000
KS ci ratio: 2.763838e-01	ci left: 6.929992e-04	ci right 9.188333e-04	k: 200	n:250000
NBPF1   250000 perm   98 sec   (2554 perm/sec)   p_kst 8.000000e-04   p_cons 7.947160e-01   p_joint 3.944000e-03

Joint ci ratio: 1.223183e-01	ci left: 3.693874e-03	ci right 4.178826e-03	k: 1022	n:260000
Cons ci ratio: 3.909102e-03	ci left: 7.930034e-01	ci right 7.961132e-01	k: 206586	n:260000
KS ci ratio: 2.684834e-01	ci left: 7.093483e-04	ci right 9.327906e-04	k: 212	n:260000
NBPF1   260000 perm   103 sec   (2526 perm/sec)   p_kst 8.153846e-04   p_cons 7.945615e-01   p_joint 3.930769e-03

Joint ci ratio: 1.255073e-01	ci left: 3.373993e-03	ci right 3.829357e-03	k: 971	n:270000
Cons ci ratio: 3.836708e-03	ci left: 7.929746e-01	ci right 7.960265e-01	k: 214516	n:270000
KS ci ratio: 2.629845e-01	ci left: 7.141894e-04	ci right 9.337910e-04	k: 221	n:270000
NBPF1   270000 perm   108 sec   (2499 perm/sec)   p_kst 8.185185e-04   p_cons 7.945037e-01   p_joint 3.596296e-03

Joint ci ratio: 1.233071e-01	ci left: 3.374604e-03	ci right 3.821482e-03	k: 1006	n:280000
Cons ci ratio: 3.769139e-03	ci left: 7.928660e-01	ci right 7.958636e-01	k: 222423	n:280000
KS ci ratio: 2.578102e-01	ci left: 7.187280e-04	ci right 9.346771e-04	k: 230	n:280000
NBPF1   280000 perm   113 sec   (2473 perm/sec)   p_kst 8.214286e-04   p_cons 7.943679e-01   p_joint 3.592857e-03

Joint ci ratio: 1.250078e-01	ci left: 3.168005e-03	ci right 3.593739e-03	k: 979	n:290000
Cons ci ratio: 3.703298e-03	ci left: 7.929175e-01	ci right 7.958628e-01	k: 230374	n:290000
KS ci ratio: 2.524040e-01	ci left: 7.262229e-04	ci right 9.391291e-04	k: 240	n:290000
NBPF1   290000 perm   118 sec   (2448 perm/sec)   p_kst 8.275862e-04   p_cons 7.943931e-01   p_joint 3.375862e-03

Joint ci ratio: 1.279290e-01	ci left: 2.920354e-03	ci right 3.322673e-03	k: 935	n:300000
Cons ci ratio: 3.641162e-03	ci left: 7.929326e-01	ci right 7.958284e-01	k: 238315	n:300000
KS ci ratio: 2.488169e-01	ci left: 7.238833e-04	ci right 9.326207e-04	k: 247	n:300000
NBPF1   300000 perm   124 sec   (2422 perm/sec)   p_kst 8.233333e-04   p_cons 7.943833e-01   p_joint 3.116667e-03

Joint ci ratio: 1.273229e-01	ci left: 2.854248e-03	ci right 3.245456e-03	k: 944	n:310000
Cons ci ratio: 3.580496e-03	ci left: 7.930894e-01	ci right 7.959373e-01	k: 246300	n:310000
KS ci ratio: 2.444211e-01	ci left: 7.277707e-04	ci right 9.333587e-04	k: 256	n:310000
NBPF1   310000 perm   129 sec   (2397 perm/sec)   p_kst 8.258065e-04   p_cons 7.945161e-01   p_joint 3.045161e-03

Joint ci ratio: 1.256076e-01	ci left: 2.843731e-03	ci right 3.227856e-03	k: 970	n:320000
Cons ci ratio: 3.524145e-03	ci left: 7.931083e-01	ci right 7.959114e-01	k: 254244	n:320000
KS ci ratio: 2.407036e-01	ci left: 7.285085e-04	ci right 9.307078e-04	k: 264	n:320000
NBPF1   320000 perm   135 sec   (2372 perm/sec)   p_kst 8.250000e-04   p_cons 7.945125e-01   p_joint 3.031250e-03

Joint ci ratio: 1.246514e-01	ci left: 2.801585e-03	ci right 3.176924e-03	k: 985	n:330000
Cons ci ratio: 3.470342e-03	ci left: 7.931294e-01	ci right 7.958896e-01	k: 262189	n:330000
KS ci ratio: 2.389088e-01	ci left: 7.178249e-04	ci right 9.153534e-04	k: 268	n:330000
NBPF1   330000 perm   141 sec   (2347 perm/sec)   p_kst 8.121212e-04   p_cons 7.945121e-01   p_joint 2.984848e-03

Joint ci ratio: 1.228579e-01	ci left: 2.801839e-03	ci right 3.171418e-03	k: 1014	n:340000
Cons ci ratio: 3.419731e-03	ci left: 7.930730e-01	ci right 7.957926e-01	k: 270108	n:340000
KS ci ratio: 2.358601e-01	ci left: 7.160761e-04	ci right 9.102418e-04	k: 275	n:340000
NBPF1   340000 perm   146 sec   (2323 perm/sec)   p_kst 8.088235e-04   p_cons 7.944353e-01   p_joint 2.982353e-03

Joint ci ratio: 1.211979e-01	ci left: 2.799345e-03	ci right 3.163247e-03	k: 1042	n:350000
Cons ci ratio: 3.373276e-03	ci left: 7.928253e-01	ci right 7.955070e-01	k: 277959	n:350000
KS ci ratio: 2.300946e-01	ci left: 7.332833e-04	ci right 9.265641e-04	k: 289	n:350000
NBPF1   350000 perm   152 sec   (2300 perm/sec)   p_kst 8.257143e-04   p_cons 7.941686e-01   p_joint 2.977143e-03

Joint ci ratio: 1.197718e-01	ci left: 2.788936e-03	ci right 3.146917e-03	k: 1067	n:360000
Cons ci ratio: 3.326708e-03	ci left: 7.927837e-01	ci right 7.954282e-01	k: 285879	n:360000
KS ci ratio: 2.281374e-01	ci left: 7.260057e-04	ci right 9.155114e-04	k: 294	n:360000
NBPF1   360000 perm   158 sec   (2278 perm/sec)   p_kst 8.166667e-04   p_cons 7.941083e-01   p_joint 2.963889e-03

Joint ci ratio: 1.188868e-01	ci left: 2.755509e-03	ci right 3.106402e-03	k: 1083	n:370000
Cons ci ratio: 3.283155e-03	ci left: 7.926309e-01	ci right 7.952402e-01	k: 293757	n:370000
KS ci ratio: 2.254783e-01	ci left: 7.242279e-04	ci right 9.107600e-04	k: 301	n:370000
NBPF1   370000 perm   164 sec   (2256 perm/sec)   p_kst 8.135135e-04   p_cons 7.939378e-01   p_joint 2.927027e-03

Joint ci ratio: 1.218583e-01	ci left: 2.550256e-03	ci right 2.883714e-03	k: 1031	n:380000
Cons ci ratio: 3.237541e-03	ci left: 7.928635e-01	ci right 7.954372e-01	k: 301778	n:380000
KS ci ratio: 2.229100e-01	ci left: 7.225558e-04	ci right 9.062465e-04	k: 308	n:380000
NBPF1   380000 perm   170 sec   (2234 perm/sec)   p_kst 8.105263e-04   p_cons 7.941526e-01   p_joint 2.713158e-03

Joint ci ratio: 1.233699e-01	ci left: 2.422719e-03	ci right 2.743717e-03	k: 1006	n:390000
Cons ci ratio: 3.196855e-03	ci left: 7.927684e-01	ci right 7.953093e-01	k: 309676	n:390000
KS ci ratio: 2.193878e-01	ci left: 7.282498e-04	ci right 9.100682e-04	k: 318	n:390000
NBPF1   390000 perm   176 sec   (2212 perm/sec)   p_kst 8.153846e-04   p_cons 7.940410e-01   p_joint 2.579487e-03

Joint ci ratio: 1.238061e-01	ci left: 2.345186e-03	ci right 2.657090e-03	k: 999	n:400000
Cons ci ratio: 3.156314e-03	ci left: 7.928185e-01	ci right 7.953273e-01	k: 317630	n:400000
KS ci ratio: 2.160274e-01	ci left: 7.336807e-04	ci right 9.136772e-04	k: 328	n:400000
NBPF1   400000 perm   184 sec   (2178 perm/sec)   p_kst 8.200000e-04   p_cons 7.940750e-01   p_joint 2.497500e-03

Joint ci ratio: 1.224067e-01	ci left: 2.342356e-03	ci right 2.650108e-03	k: 1022	n:410000
Cons ci ratio: 3.117090e-03	ci left: 7.928859e-01	ci right 7.953636e-01	k: 325592	n:410000
KS ci ratio: 2.131317e-01	ci left: 7.365578e-04	ci right 9.145213e-04	k: 337	n:410000
NBPF1   410000 perm   190 sec   (2155 perm/sec)   p_kst 8.219512e-04   p_cons 7.941268e-01   p_joint 2.492683e-03

Joint ci ratio: 1.228324e-01	ci left: 2.270425e-03	ci right 2.569839e-03	k: 1015	n:420000
Cons ci ratio: 3.080931e-03	ci left: 7.927761e-01	ci right 7.952247e-01	k: 333481	n:420000
KS ci ratio: 2.121935e-01	ci left: 7.257827e-04	ci right 9.002703e-04	k: 340	n:420000
NBPF1   420000 perm   197 sec   (2133 perm/sec)   p_kst 8.095238e-04   p_cons 7.940024e-01   p_joint 2.416667e-03

Joint ci ratio: 1.215240e-01	ci left: 2.267223e-03	ci right 2.562801e-03	k: 1037	n:430000
Cons ci ratio: 3.045090e-03	ci left: 7.927694e-01	ci right 7.951894e-01	k: 341412	n:430000
KS ci ratio: 2.097474e-01	ci left: 7.265258e-04	ci right 8.989199e-04	k: 348	n:430000
NBPF1   430000 perm   203 sec   (2114 perm/sec)   p_kst 8.093023e-04   p_cons 7.939814e-01   p_joint 2.411628e-03

Joint ci ratio: 1.228998e-01	ci left: 2.165014e-03	ci right 2.450694e-03	k: 1014	n:440000
Cons ci ratio: 3.009803e-03	ci left: 7.928361e-01	ci right 7.952282e-01	k: 349375	n:440000
KS ci ratio: 2.048162e-01	ci left: 7.466458e-04	ci right 9.191277e-04	k: 365	n:440000
NBPF1   440000 perm   210 sec   (2096 perm/sec)   p_kst 8.295455e-04   p_cons 7.940341e-01   p_joint 2.304545e-03

Joint ci ratio: 1.217070e-01	ci left: 2.159987e-03	ci right 2.442038e-03	k: 1034	n:450000
Cons ci ratio: 2.976807e-03	ci left: 7.927797e-01	ci right 7.951454e-01	k: 357284	n:450000
KS ci ratio: 2.023433e-01	ci left: 7.490343e-04	ci right 9.197206e-04	k: 374	n:450000
NBPF1   450000 perm   217 sec   (2077 perm/sec)   p_kst 8.311111e-04   p_cons 7.939644e-01   p_joint 2.297778e-03

Joint ci ratio: 1.213580e-01	ci left: 2.125675e-03	ci right 2.402393e-03	k: 1040	n:460000
Cons ci ratio: 2.943424e-03	ci left: 7.928872e-01	ci right 7.952265e-01	k: 365267	n:460000
KS ci ratio: 2.012737e-01	ci left: 7.410069e-04	ci right 9.088616e-04	k: 378	n:460000
NBPF1   460000 perm   223 sec   (2059 perm/sec)   p_kst 8.217391e-04   p_cons 7.940587e-01   p_joint 2.260870e-03

Joint ci ratio: 1.201523e-01	ci left: 2.123779e-03	ci right 2.397308e-03	k: 1061	n:470000
Cons ci ratio: 2.911083e-03	ci left: 7.929965e-01	ci right 7.953105e-01	k: 373253	n:470000
KS ci ratio: 1.991825e-01	ci left: 7.414087e-04	ci right 9.073976e-04	k: 386	n:470000
NBPF1   470000 perm   230 sec   (2041 perm/sec)   p_kst 8.212766e-04   p_cons 7.941553e-01   p_joint 2.257447e-03

Joint ci ratio: 1.202687e-01	ci left: 2.075489e-03	ci right 2.343076e-03	k: 1059	n:480000
Cons ci ratio: 2.879655e-03	ci left: 7.931161e-01	ci right 7.954053e-01	k: 381246	n:480000
KS ci ratio: 1.959181e-01	ci left: 7.517069e-04	ci right 9.169142e-04	k: 399	n:480000
NBPF1   480000 perm   237 sec   (2024 perm/sec)   p_kst 8.312500e-04   p_cons 7.942625e-01   p_joint 2.206250e-03

Joint ci ratio: 1.226120e-01	ci left: 1.953972e-03	ci right 2.211156e-03	k: 1019	n:490000
Cons ci ratio: 2.848208e-03	ci left: 7.933475e-01	ci right 7.956123e-01	k: 389296	n:490000
KS ci ratio: 1.939879e-01	ci left: 7.518956e-04	ci right 9.153241e-04	k: 407	n:490000
NBPF1   490000 perm   244 sec   (2007 perm/sec)   p_kst 8.306122e-04   p_cons 7.944816e-01   p_joint 2.079592e-03

Joint ci ratio: 1.218982e-01	ci left: 1.938157e-03	ci right 2.191668e-03	k: 1031	n:500000
Cons ci ratio: 2.819199e-03	ci left: 7.934034e-01	ci right 7.956452e-01	k: 397263	n:500000
KS ci ratio: 1.923452e-01	ci left: 7.501806e-04	ci right 9.116939e-04	k: 414	n:500000
NBPF1   500000 perm   251 sec   (1989 perm/sec)   p_kst 8.280000e-04   p_cons 7.945260e-01   p_joint 2.062000e-03

Joint ci ratio: 1.293332e-01	ci left: 1.681729e-03	ci right 1.916146e-03	k: 916	n:510000
Cons ci ratio: 2.791226e-03	ci left: 7.934375e-01	ci right 7.956572e-01	k: 405220	n:510000
KS ci ratio: 1.905177e-01	ci left: 7.504057e-04	ci right 9.102547e-04	k: 422	n:510000
NBPF1   510000 perm   259 sec   (1972 perm/sec)   p_kst 8.274510e-04   p_cons 7.945490e-01   p_joint 1.796078e-03

Joint ci ratio: 1.290538e-01	ci left: 1.656830e-03	ci right 1.887239e-03	k: 920	n:520000
Cons ci ratio: 2.763402e-03	ci left: 7.935495e-01	ci right 7.957473e-01	k: 413218	n:520000
KS ci ratio: 1.891811e-01	ci left: 7.469647e-04	ci right 9.048362e-04	k: 428	n:520000
NBPF1   520000 perm   266 sec   (1955 perm/sec)   p_kst 8.230769e-04   p_cons 7.946500e-01   p_joint 1.769231e-03

Joint ci ratio: 1.120999e-01	ci left: 2.172818e-03	ci right 2.432670e-03	k: 1219	n:530000
Cons ci ratio: 2.737485e-03	ci left: 7.935268e-01	ci right 7.957039e-01	k: 421147	n:530000
KS ci ratio: 1.868009e-01	ci left: 7.526493e-04	ci right 9.094939e-04	k: 439	n:530000
NBPF1   530000 perm   273 sec   (1940 perm/sec)   p_kst 8.283019e-04   p_cons 7.946170e-01   p_joint 2.300000e-03

Joint ci ratio: 1.111476e-01	ci left: 2.170384e-03	ci right 2.427595e-03	k: 1240	n:540000
Cons ci ratio: 2.711530e-03	ci left: 7.935960e-01	ci right 7.957526e-01	k: 429125	n:540000
KS ci ratio: 1.857491e-01	ci left: 7.475386e-04	ci right 9.023422e-04	k: 444	n:540000
NBPF1   540000 perm   281 sec   (1924 perm/sec)   p_kst 8.222222e-04   p_cons 7.946759e-01   p_joint 2.296296e-03

Joint ci ratio: 1.103947e-01	ci left: 2.160975e-03	ci right 2.415223e-03	k: 1257	n:550000
Cons ci ratio: 2.687286e-03	ci left: 7.935426e-01	ci right 7.956797e-01	k: 437037	n:550000
KS ci ratio: 1.843053e-01	ci left: 7.460847e-04	ci right 8.992522e-04	k: 451	n:550000
NBPF1   550000 perm   288 sec   (1908 perm/sec)   p_kst 8.200000e-04   p_cons 7.946127e-01   p_joint 2.285455e-03

Joint ci ratio: 1.104409e-01	ci left: 2.120647e-03	ci right 2.370262e-03	k: 1256	n:560000
Cons ci ratio: 2.663347e-03	ci left: 7.935323e-01	ci right 7.956503e-01	k: 444972	n:560000
KS ci ratio: 1.830945e-01	ci left: 7.429833e-04	ci right 8.944007e-04	k: 457	n:560000
NBPF1   560000 perm   296 sec   (1893 perm/sec)   p_kst 8.160714e-04   p_cons 7.945929e-01   p_joint 2.242857e-03

Joint ci ratio: 1.149283e-01	ci left: 1.919755e-03	ci right 2.155528e-03	k: 1160	n:570000
Cons ci ratio: 2.639880e-03	ci left: 7.935418e-01	ci right 7.956412e-01	k: 452918	n:570000
KS ci ratio: 1.817113e-01	ci left: 7.416684e-04	ci right 8.915504e-04	k: 464	n:570000
NBPF1   570000 perm   303 sec   (1878 perm/sec)   p_kst 8.140351e-04   p_cons 7.945930e-01   p_joint 2.035088e-03

Joint ci ratio: 1.137101e-01	ci left: 1.928527e-03	ci right 2.162698e-03	k: 1185	n:580000
Cons ci ratio: 2.617285e-03	ci left: 7.935182e-01	ci right 7.955995e-01	k: 460845	n:580000
KS ci ratio: 1.801681e-01	ci left: 7.420494e-04	ci right 8.905960e-04	k: 472	n:580000
NBPF1   580000 perm   311 sec   (1863 perm/sec)   p_kst 8.137931e-04   p_cons 7.945603e-01   p_joint 2.043103e-03

Joint ci ratio: 1.145866e-01	ci left: 1.866200e-03	ci right 2.094667e-03	k: 1167	n:590000
Cons ci ratio: 2.594358e-03	ci left: 7.936093e-01	ci right 7.956725e-01	k: 468839	n:590000
KS ci ratio: 1.786636e-01	ci left: 7.424227e-04	ci right 8.896687e-04	k: 480	n:590000
NBPF1   590000 perm   319 sec   (1848 perm/sec)   p_kst 8.135593e-04   p_cons 7.946424e-01   p_joint 1.977966e-03

Joint ci ratio: 9.799206e-02	ci left: 2.529620e-03	ci right 2.791885e-03	k: 1595	n:600000
Cons ci ratio: 2.572640e-03	ci left: 7.936189e-01	ci right 7.956649e-01	k: 476786	n:600000
KS ci ratio: 1.770151e-01	ci left: 7.443814e-04	ci right 8.905079e-04	k: 489	n:600000
NBPF1   600000 perm   327 sec   (1834 perm/sec)   p_kst 8.150000e-04   p_cons 7.946433e-01   p_joint 2.658333e-03

Joint ci ratio: 9.750538e-02	ci left: 2.513738e-03	ci right 2.772988e-03	k: 1611	n:610000
Cons ci ratio: 2.550663e-03	ci left: 7.937301e-01	ci right 7.957589e-01	k: 484795	n:610000
KS ci ratio: 1.752357e-01	ci left: 7.478493e-04	ci right 8.930246e-04	k: 499	n:610000
NBPF1   610000 perm   335 sec   (1819 perm/sec)   p_kst 8.180328e-04   p_cons 7.947459e-01   p_joint 2.640984e-03

Joint ci ratio: 9.690659e-02	ci left: 2.504667e-03	ci right 2.761306e-03	k: 1631	n:620000
Cons ci ratio: 2.530078e-03	ci left: 7.937296e-01	ci right 7.957419e-01	k: 492737	n:620000
KS ci ratio: 1.736795e-01	ci left: 7.496696e-04	ci right 8.937703e-04	k: 508	n:620000
NBPF1   620000 perm   343 sec   (1805 perm/sec)   p_kst 8.193548e-04   p_cons 7.947371e-01   p_joint 2.630645e-03

Joint ci ratio: 9.855704e-02	ci left: 2.381284e-03	ci right 2.629675e-03	k: 1577	n:630000
Cons ci ratio: 2.509910e-03	ci left: 7.937386e-01	ci right 7.957349e-01	k: 500685	n:630000
KS ci ratio: 1.721640e-01	ci left: 7.514375e-04	ci right 8.944868e-04	k: 517	n:630000
NBPF1   630000 perm   352 sec   (1792 perm/sec)   p_kst 8.206349e-04   p_cons 7.947381e-01   p_joint 2.503175e-03

Joint ci ratio: 9.784670e-02	ci left: 2.379131e-03	ci right 2.625407e-03	k: 1600	n:640000
Cons ci ratio: 2.489883e-03	ci left: 7.937913e-01	ci right 7.957717e-01	k: 508661	n:640000
KS ci ratio: 1.708497e-01	ci left: 7.516598e-04	ci right 8.935465e-04	k: 525	n:640000
NBPF1   640000 perm   360 sec   (1778 perm/sec)   p_kst 8.203125e-04   p_cons 7.947828e-01   p_joint 2.500000e-03

Joint ci ratio: 9.903380e-02	ci left: 2.285501e-03	ci right 2.525122e-03	k: 1562	n:650000
Cons ci ratio: 2.470642e-03	ci left: 7.938007e-01	ci right 7.957659e-01	k: 516610	n:650000
KS ci ratio: 1.695652e-01	ci left: 7.518792e-04	ci right 8.926311e-04	k: 533	n:650000
NBPF1   650000 perm   368 sec   (1764 perm/sec)   p_kst 8.200000e-04   p_cons 7.947846e-01   p_joint 2.403077e-03

Joint ci ratio: 1.005627e-01	ci left: 2.181432e-03	ci right 2.413880e-03	k: 1515	n:660000
Cons ci ratio: 2.451875e-03	ci left: 7.938054e-01	ci right 7.957556e-01	k: 524556	n:660000
KS ci ratio: 1.678449e-01	ci left: 7.564502e-04	ci right 8.964759e-04	k: 544	n:660000
NBPF1   660000 perm   377 sec   (1751 perm/sec)   p_kst 8.242424e-04   p_cons 7.947818e-01   p_joint 2.295455e-03

Joint ci ratio: 1.024792e-01	ci left: 2.067407e-03	ci right 2.292156e-03	k: 1459	n:670000
Cons ci ratio: 2.433874e-03	ci left: 7.937637e-01	ci right 7.956994e-01	k: 532471	n:670000
KS ci ratio: 1.669288e-01	ci left: 7.537399e-04	ci right 8.924258e-04	k: 550	n:670000
NBPF1   670000 perm   386 sec   (1738 perm/sec)   p_kst 8.208955e-04   p_cons 7.947328e-01   p_joint 2.177612e-03

Joint ci ratio: 8.163486e-02	ci left: 3.241419e-03	ci right 3.518721e-03	k: 2297	n:680000
Cons ci ratio: 2.500448e-03	ci left: 7.823026e-01	ci right 7.842626e-01	k: 532633	n:680000
KS ci ratio: 1.661769e-01	ci left: 7.497018e-04	ci right 8.869612e-04	k: 555	n:680000
NBPF1   680000 perm   394 sec   (1725 perm/sec)   p_kst 8.161765e-04   p_cons 7.832838e-01   p_joint 3.377941e-03

Joint ci ratio: 8.121246e-02	ci left: 3.228515e-03	ci right 3.503217e-03	k: 2321	n:690000
Cons ci ratio: 2.481773e-03	ci left: 7.823768e-01	ci right 7.843223e-01	k: 540512	n:690000
KS ci ratio: 1.648480e-01	ci left: 7.513398e-04	ci right 8.876900e-04	k: 564	n:690000
NBPF1   690000 perm   403 sec   (1713 perm/sec)   p_kst 8.173913e-04   p_cons 7.833507e-01   p_joint 3.363768e-03

Joint ci ratio: 8.419513e-02	ci left: 2.957131e-03	ci right 3.218436e-03	k: 2160	n:700000
Cons ci ratio: 2.463677e-03	ci left: 7.824260e-01	ci right 7.843574e-01	k: 548375	n:700000
KS ci ratio: 1.629831e-01	ci left: 7.584162e-04	ci right 8.943410e-04	k: 577	n:700000
NBPF1   700000 perm   412 sec   (1699 perm/sec)   p_kst 8.242857e-04   p_cons 7.833929e-01   p_joint 3.085714e-03

Joint ci ratio: 8.402165e-02	ci left: 2.927889e-03	ci right 3.186051e-03	k: 2169	n:710000
Cons ci ratio: 2.446986e-03	ci left: 7.823328e-01	ci right 7.842508e-01	k: 556138	n:710000
KS ci ratio: 1.618668e-01	ci left: 7.585439e-04	ci right 8.934698e-04	k: 585	n:710000
NBPF1   710000 perm   421 sec   (1687 perm/sec)   p_kst 8.239437e-04   p_cons 7.832930e-01   p_joint 3.054930e-03

Joint ci ratio: 8.722636e-02	ci left: 2.675180e-03	ci right 2.920514e-03	k: 2013	n:720000
Cons ci ratio: 2.430499e-03	ci left: 7.822603e-01	ci right 7.841652e-01	k: 563914	n:720000
KS ci ratio: 1.609087e-01	ci left: 7.573381e-04	ci right 8.911751e-04	k: 592	n:720000
NBPF1   720000 perm   430 sec   (1675 perm/sec)   p_kst 8.222222e-04   p_cons 7.832139e-01   p_joint 2.795833e-03

Joint ci ratio: 8.658376e-02	ci left: 2.678736e-03	ci right 2.922496e-03	k: 2043	n:730000
Cons ci ratio: 2.413348e-03	ci left: 7.823298e-01	ci right 7.842214e-01	k: 571792	n:730000
KS ci ratio: 1.601010e-01	ci left: 7.548526e-04	ci right 8.875164e-04	k: 598	n:730000
NBPF1   730000 perm   439 sec   (1663 perm/sec)   p_kst 8.191781e-04   p_cons 7.832767e-01   p_joint 2.798630e-03

Joint ci ratio: 8.647941e-02	ci left: 2.649146e-03	ci right 2.889908e-03	k: 2048	n:740000
Cons ci ratio: 2.397279e-03	ci left: 7.822946e-01	ci right 7.841735e-01	k: 579594	n:740000
KS ci ratio: 1.593054e-01	ci left: 7.524359e-04	ci right 8.839549e-04	k: 604	n:740000
NBPF1   740000 perm   448 sec   (1651 perm/sec)   p_kst 8.162162e-04   p_cons 7.832351e-01   p_joint 2.767568e-03

Joint ci ratio: 8.627017e-02	ci left: 2.626868e-03	ci right 2.864998e-03	k: 2058	n:750000
Cons ci ratio: 2.381257e-03	ci left: 7.822991e-01	ci right 7.841654e-01	k: 587425	n:750000
KS ci ratio: 1.585215e-01	ci left: 7.500852e-04	ci right 8.804868e-04	k: 610	n:750000
NBPF1   750000 perm   457 sec   (1639 perm/sec)   p_kst 8.133333e-04   p_cons 7.832333e-01   p_joint 2.744000e-03

Joint ci ratio: 8.564832e-02	ci left: 2.630929e-03	ci right 2.867623e-03	k: 2088	n:760000
Cons ci ratio: 2.365377e-03	ci left: 7.823285e-01	ci right 7.841825e-01	k: 595275	n:760000
KS ci ratio: 1.572398e-01	ci left: 7.528538e-04	ci right 8.825787e-04	k: 620	n:760000
NBPF1   760000 perm   467 sec   (1628 perm/sec)   p_kst 8.157895e-04   p_cons 7.832566e-01   p_joint 2.747368e-03

Joint ci ratio: 8.654764e-02	ci left: 2.542115e-03	ci right 2.773340e-03	k: 2045	n:770000
Cons ci ratio: 2.350242e-03	ci left: 7.822948e-01	ci right 7.841368e-01	k: 603077	n:770000
KS ci ratio: 1.561125e-01	ci left: 7.543066e-04	ci right 8.832627e-04	k: 629	n:770000
NBPF1   770000 perm   476 sec   (1617 perm/sec)   p_kst 8.168831e-04   p_cons 7.832169e-01   p_joint 2.655844e-03

Joint ci ratio: 8.585765e-02	ci left: 2.550920e-03	ci right 2.781004e-03	k: 2078	n:780000
Cons ci ratio: 2.334785e-03	ci left: 7.823506e-01	ci right 7.841806e-01	k: 610948	n:780000
KS ci ratio: 1.544058e-01	ci left: 7.618876e-04	ci right 8.905841e-04	k: 643	n:780000
NBPF1   780000 perm   486 sec   (1606 perm/sec)   p_kst 8.243590e-04   p_cons 7.832667e-01   p_joint 2.664103e-03

Joint ci ratio: 8.600439e-02	ci left: 2.509957e-03	ci right 2.736753e-03	k: 2071	n:790000
Cons ci ratio: 2.319941e-03	ci left: 7.823594e-01	ci right 7.841778e-01	k: 618783	n:790000
KS ci ratio: 1.527538e-01	ci left: 7.692842e-04	ci right 8.977126e-04	k: 657	n:790000
NBPF1   790000 perm   495 sec   (1595 perm/sec)   p_kst 8.316456e-04   p_cons 7.832696e-01   p_joint 2.621519e-03

Joint ci ratio: 8.588123e-02	ci left: 2.485920e-03	ci right 2.710206e-03	k: 2077	n:800000
Cons ci ratio: 2.305316e-03	ci left: 7.823768e-01	ci right 7.841837e-01	k: 626625	n:800000
KS ci ratio: 1.517196e-01	ci left: 7.704896e-04	ci right 8.981694e-04	k: 666	n:800000
NBPF1   800000 perm   505 sec   (1585 perm/sec)   p_kst 8.325000e-04   p_cons 7.832813e-01   p_joint 2.596250e-03

Joint ci ratio: 8.543040e-02	ci left: 2.481808e-03	ci right 2.704489e-03	k: 2099	n:810000
Cons ci ratio: 2.291307e-03	ci left: 7.823430e-01	ci right 7.841389e-01	k: 634426	n:810000
KS ci ratio: 1.510420e-01	ci left: 7.681042e-04	ci right 8.947687e-04	k: 672	n:810000
NBPF1   810000 perm   514 sec   (1575 perm/sec)   p_kst 8.296296e-04   p_cons 7.832420e-01   p_joint 2.591358e-03

Joint ci ratio: 8.500668e-02	ci left: 2.476606e-03	ci right 2.697663e-03	k: 2120	n:820000
Cons ci ratio: 2.277182e-03	ci left: 7.823651e-01	ci right 7.841499e-01	k: 642272	n:820000
KS ci ratio: 1.496036e-01	ci left: 7.739946e-04	ci right 9.003062e-04	k: 685	n:820000
NBPF1   820000 perm   524 sec   (1564 perm/sec)   p_kst 8.353659e-04   p_cons 7.832585e-01   p_joint 2.585366e-03

Joint ci ratio: 8.529068e-02	ci left: 2.430256e-03	ci right 2.647937e-03	k: 2106	n:830000
Cons ci ratio: 2.262816e-03	ci left: 7.824615e-01	ci right 7.842353e-01	k: 650180	n:830000
KS ci ratio: 1.491697e-01	ci left: 7.693083e-04	ci right 8.944586e-04	k: 689	n:830000
NBPF1   830000 perm   534 sec   (1554 perm/sec)   p_kst 8.301205e-04   p_cons 7.833494e-01   p_joint 2.537349e-03

Joint ci ratio: 8.502941e-02	ci left: 2.416471e-03	ci right 2.632221e-03	k: 2119	n:840000
Cons ci ratio: 2.249090e-03	ci left: 7.824996e-01	ci right 7.842627e-01	k: 658041	n:840000
KS ci ratio: 1.482062e-01	ci left: 7.704656e-04	ci right 8.949229e-04	k: 698	n:840000
NBPF1   840000 perm   544 sec   (1544 perm/sec)   p_kst 8.309524e-04   p_cons 7.833821e-01   p_joint 2.522619e-03

Joint ci ratio: 8.441418e-02	ci left: 2.423740e-03	ci right 2.638496e-03	k: 2150	n:850000
Cons ci ratio: 2.235796e-03	ci left: 7.825086e-01	ci right 7.842612e-01	k: 665878	n:850000
KS ci ratio: 1.470534e-01	ci left: 7.738646e-04	ci right 8.978131e-04	k: 709	n:850000
NBPF1   850000 perm   554 sec   (1533 perm/sec)   p_kst 8.341176e-04   p_cons 7.833859e-01   p_joint 2.529412e-03

Joint ci ratio: 8.398594e-02	ci left: 2.420599e-03	ci right 2.633936e-03	k: 2172	n:860000
Cons ci ratio: 2.222850e-03	ci left: 7.824999e-01	ci right 7.842424e-01	k: 673700	n:860000
KS ci ratio: 1.460285e-01	ci left: 7.760678e-04	ci right 8.994273e-04	k: 719	n:860000
NBPF1   860000 perm   564 sec   (1523 perm/sec)   p_kst 8.360465e-04   p_cons 7.833721e-01   p_joint 2.525581e-03

Joint ci ratio: 8.063376e-02	ci left: 2.599929e-03	ci right 2.819495e-03	k: 2356	n:870000
Cons ci ratio: 2.210320e-03	ci left: 7.824615e-01	ci right 7.841941e-01	k: 681496	n:870000
KS ci ratio: 1.452240e-01	ci left: 7.760078e-04	ci right 8.986193e-04	k: 727	n:870000
NBPF1   870000 perm   575 sec   (1514 perm/sec)   p_kst 8.356322e-04   p_cons 7.833287e-01   p_joint 2.708046e-03

Joint ci ratio: 8.270108e-02	ci left: 2.441249e-03	ci right 2.652956e-03	k: 2240	n:880000
Cons ci ratio: 2.198029e-03	ci left: 7.824195e-01	ci right 7.841423e-01	k: 689288	n:880000
KS ci ratio: 1.450254e-01	ci left: 7.693796e-04	ci right 8.907631e-04	k: 729	n:880000
NBPF1   880000 perm   585 sec   (1504 perm/sec)   p_kst 8.284091e-04   p_cons 7.832818e-01   p_joint 2.545455e-03

Joint ci ratio: 8.576852e-02	ci left: 2.241120e-03	ci right 2.443040e-03	k: 2083	n:890000
Cons ci ratio: 2.185334e-03	ci left: 7.824730e-01	ci right 7.841859e-01	k: 697164	n:890000
KS ci ratio: 1.440421e-01	ci left: 7.715645e-04	ci right 8.923965e-04	k: 739	n:890000
NBPF1   890000 perm   595 sec   (1495 perm/sec)   p_kst 8.303371e-04   p_cons 7.833303e-01   p_joint 2.340449e-03

Joint ci ratio: 8.503658e-02	ci left: 2.255365e-03	ci right 2.456748e-03	k: 2119	n:900000
Cons ci ratio: 2.173296e-03	ci left: 7.824563e-01	ci right 7.841597e-01	k: 704978	n:900000
KS ci ratio: 1.424148e-01	ci left: 7.812039e-04	ci right 9.020459e-04	k: 756	n:900000
NBPF1   900000 perm   606 sec   (1486 perm/sec)   p_kst 8.400000e-04   p_cons 7.833089e-01   p_joint 2.354444e-03

Joint ci ratio: 8.450003e-02	ci left: 2.259622e-03	ci right 2.460050e-03	k: 2146	n:910000
Cons ci ratio: 2.161379e-03	ci left: 7.824521e-01	ci right 7.841461e-01	k: 712803	n:910000
KS ci ratio: 1.415757e-01	ci left: 7.821580e-04	ci right 9.023746e-04	k: 765	n:910000
NBPF1   910000 perm   616 sec   (1477 perm/sec)   p_kst 8.406593e-04   p_cons 7.833000e-01   p_joint 2.358242e-03

Joint ci ratio: 8.385760e-02	ci left: 2.270176e-03	ci right 2.469934e-03	k: 2179	n:920000
Cons ci ratio: 2.149786e-03	ci left: 7.824273e-01	ci right 7.841122e-01	k: 720609	n:920000
KS ci ratio: 1.401192e-01	ci left: 7.904350e-04	ci right 9.105696e-04	k: 781	n:920000
NBPF1   920000 perm   627 sec   (1467 perm/sec)   p_kst 8.489130e-04   p_cons 7.832707e-01   p_joint 2.368478e-03

Joint ci ratio: 8.466042e-02	ci left: 2.202605e-03	ci right 2.398365e-03	k: 2138	n:930000
Cons ci ratio: 2.137998e-03	ci left: 7.824634e-01	ci right 7.841391e-01	k: 728471	n:930000
KS ci ratio: 1.394964e-01	ci left: 7.891993e-04	ci right 9.085686e-04	k: 788	n:930000
NBPF1   930000 perm   638 sec   (1458 perm/sec)   p_kst 8.473118e-04   p_cons 7.833022e-01   p_joint 2.298925e-03

Joint ci ratio: 8.458223e-02	ci left: 2.183337e-03	ci right 2.377197e-03	k: 2142	n:940000
Cons ci ratio: 2.126969e-03	ci left: 7.824082e-01	ci right 7.840752e-01	k: 736248	n:940000
KS ci ratio: 1.389692e-01	ci left: 7.869641e-04	ci right 9.055082e-04	k: 794	n:940000
NBPF1   940000 perm   649 sec   (1449 perm/sec)   p_kst 8.446809e-04   p_cons 7.832426e-01   p_joint 2.278723e-03

Joint ci ratio: 8.428811e-02	ci left: 2.175811e-03	ci right 2.368297e-03	k: 2157	n:950000
Cons ci ratio: 2.115446e-03	ci left: 7.824606e-01	ci right 7.841187e-01	k: 744126	n:950000
KS ci ratio: 1.385345e-01	ci left: 7.837606e-04	ci right 9.014224e-04	k: 799	n:950000
NBPF1   950000 perm   659 sec   (1441 perm/sec)   p_kst 8.410526e-04   p_cons 7.832905e-01   p_joint 2.270526e-03

Joint ci ratio: 6.902949e-02	ci left: 3.232322e-03	ci right 3.464440e-03	k: 3213	n:960000
Cons ci ratio: 2.033445e-03	ci left: 7.938989e-01	ci right 7.955159e-01	k: 762920	n:960000
KS ci ratio: 1.379325e-01	ci left: 7.826359e-04	ci right 8.995763e-04	k: 806	n:960000
NBPF1   960000 perm   670 sec   (1432 perm/sec)   p_kst 8.395833e-04   p_cons 7.947083e-01   p_joint 3.346875e-03

Joint ci ratio: 6.863543e-02	ci left: 3.236487e-03	ci right 3.467525e-03	k: 3250	n:970000
Cons ci ratio: 2.023128e-03	ci left: 7.938721e-01	ci right 7.954808e-01	k: 770837	n:970000
KS ci ratio: 1.372538e-01	ci left: 7.825310e-04	ci right 8.988335e-04	k: 814	n:970000
NBPF1   970000 perm   682 sec   (1423 perm/sec)   p_kst 8.391753e-04   p_cons 7.946773e-01   p_joint 3.350515e-03

Joint ci ratio: 6.836287e-02	ci left: 3.229538e-03	ci right 3.459127e-03	k: 3276	n:980000
Cons ci ratio: 2.013017e-03	ci left: 7.938376e-01	ci right 7.954382e-01	k: 778746	n:980000
KS ci ratio: 1.368350e-01	ci left: 7.794730e-04	ci right 8.949387e-04	k: 819	n:980000
NBPF1   980000 perm   693 sec   (1415 perm/sec)   p_kst 8.357143e-04   p_cons 7.946388e-01   p_joint 3.342857e-03

Joint ci ratio: 6.872265e-02	ci left: 3.163158e-03	ci right 3.389259e-03	k: 3242	n:990000
Cons ci ratio: 2.002976e-03	ci left: 7.938170e-01	ci right 7.954096e-01	k: 786668	n:990000
KS ci ratio: 1.355187e-01	ci left: 7.872108e-04	ci right 9.026105e-04	k: 835	n:990000
NBPF1   990000 perm   704 sec   (1406 perm/sec)   p_kst 8.434343e-04   p_cons 7.946141e-01   p_joint 3.274747e-03

Joint ci ratio: 6.885169e-02	ci left: 3.119730e-03	ci right 3.343163e-03	k: 3230	n:1000000
Cons ci ratio: 1.992766e-03	ci left: 7.938489e-01	ci right 7.954334e-01	k: 794642	n:1000000
KS ci ratio: 1.347950e-01	ci left: 7.880344e-04	ci right 9.028885e-04	k: 844	n:1000000
NBPF1   1000000 perm   715 sec   (1398 perm/sec)   p_kst 8.440000e-04   p_cons 7.946420e-01   p_joint 3.230000e-03

Joint ci ratio: 6.855543e-02	ci left: 3.116088e-03	ci right 3.338261e-03	k: 3258	n:1010000
Cons ci ratio: 1.982620e-03	ci left: 7.938951e-01	ci right 7.954716e-01	k: 802631	n:1010000
KS ci ratio: 1.344774e-01	ci left: 7.840590e-04	ci right 8.980429e-04	k: 848	n:1010000
NBPF1   1010000 perm   727 sec   (1390 perm/sec)   p_kst 8.396040e-04   p_cons 7.946842e-01   p_joint 3.225743e-03

Joint ci ratio: 6.829423e-02	ci left: 3.109628e-03	ci right 3.330463e-03	k: 3283	n:1020000
Cons ci ratio: 1.972621e-03	ci left: 7.939413e-01	ci right 7.955100e-01	k: 810621	n:1020000
KS ci ratio: 1.340834e-01	ci left: 7.811093e-04	ci right 8.943052e-04	k: 853	n:1020000
NBPF1   1020000 perm   738 sec   (1382 perm/sec)   p_kst 8.362745e-04   p_cons 7.947265e-01   p_joint 3.218627e-03

Joint ci ratio: 6.873767e-02	ci left: 3.039356e-03	ci right 3.256657e-03	k: 3241	n:1030000
Cons ci ratio: 1.962673e-03	ci left: 7.940032e-01	ci right 7.955641e-01	k: 818628	n:1030000
KS ci ratio: 1.336150e-01	ci left: 7.791559e-04	ci right 8.916429e-04	k: 859	n:1030000
NBPF1   1030000 perm   750 sec   (1374 perm/sec)   p_kst 8.339806e-04   p_cons 7.947845e-01   p_joint 3.146602e-03

Joint ci ratio: 6.887738e-02	ci left: 2.997844e-03	ci right 3.212630e-03	k: 3228	n:1040000
Cons ci ratio: 1.953392e-03	ci left: 7.939773e-01	ci right 7.955307e-01	k: 826545	n:1040000
KS ci ratio: 1.331515e-01	ci left: 7.772407e-04	ci right 8.890311e-04	k: 865	n:1040000
NBPF1   1040000 perm   761 sec   (1366 perm/sec)   p_kst 8.317308e-04   p_cons 7.947548e-01   p_joint 3.103846e-03

Joint ci ratio: 6.861248e-02	ci left: 2.992693e-03	ci right 3.206253e-03	k: 3253	n:1050000
Cons ci ratio: 1.944065e-03	ci left: 7.939814e-01	ci right 7.955274e-01	k: 834493	n:1050000
KS ci ratio: 1.326167e-01	ci left: 7.762834e-04	ci right 8.874523e-04	k: 872	n:1050000
NBPF1   1050000 perm   773 sec   (1359 perm/sec)   p_kst 8.304762e-04   p_cons 7.947552e-01   p_joint 3.098095e-03

Joint ci ratio: 6.840294e-02	ci left: 2.983005e-03	ci right 3.195197e-03	k: 3273	n:1060000
Cons ci ratio: 1.934603e-03	ci left: 7.940309e-01	ci right 7.955694e-01	k: 842489	n:1060000
KS ci ratio: 1.319383e-01	ci left: 7.771696e-04	ci right 8.878515e-04	k: 881	n:1060000
NBPF1   1060000 perm   785 sec   (1351 perm/sec)   p_kst 8.311321e-04   p_cons 7.948009e-01   p_joint 3.087736e-03

Joint ci ratio: 6.875236e-02	ci left: 2.924811e-03	ci right 3.133969e-03	k: 3240	n:1070000
Cons ci ratio: 1.925514e-03	ci left: 7.940392e-01	ci right 7.955705e-01	k: 850442	n:1070000
KS ci ratio: 1.316404e-01	ci left: 7.735213e-04	ci right 8.834154e-04	k: 885	n:1070000
NBPF1   1070000 perm   797 sec   (1343 perm/sec)   p_kst 8.271028e-04   p_cons 7.948056e-01   p_joint 3.028037e-03

Joint ci ratio: 6.840491e-02	ci left: 2.927761e-03	ci right 3.136030e-03	k: 3273	n:1080000
Cons ci ratio: 1.916981e-03	ci left: 7.939741e-01	ci right 7.954984e-01	k: 858316	n:1080000
KS ci ratio: 1.314184e-01	ci left: 7.690453e-04	ci right 8.781049e-04	k: 888	n:1080000
NBPF1   1080000 perm   808 sec   (1336 perm/sec)   p_kst 8.222222e-04   p_cons 7.947370e-01   p_joint 3.030556e-03

Joint ci ratio: 6.878622e-02	ci left: 2.868437e-03	ci right 3.073668e-03	k: 3237	n:1090000
Cons ci ratio: 1.908089e-03	ci left: 7.939910e-01	ci right 7.955083e-01	k: 866278	n:1090000
KS ci ratio: 1.309773e-01	ci left: 7.673137e-04	ci right 8.757341e-04	k: 894	n:1090000
NBPF1   1090000 perm   821 sec   (1328 perm/sec)   p_kst 8.201835e-04   p_cons 7.947505e-01   p_joint 2.969725e-03

Joint ci ratio: 6.872332e-02	ci left: 2.847720e-03	ci right 3.051275e-03	k: 3243	n:1100000
Cons ci ratio: 1.899134e-03	ci left: 7.940395e-01	ci right 7.955498e-01	k: 874275	n:1100000
KS ci ratio: 1.303236e-01	ci left: 7.682526e-04	ci right 8.762219e-04	k: 903	n:1100000
NBPF1   1100000 perm   833 sec   (1321 perm/sec)   p_kst 8.209091e-04   p_cons 7.947955e-01   p_joint 2.948182e-03

Joint ci ratio: 6.887345e-02	ci left: 2.809667e-03	ci right 3.010959e-03	k: 3229	n:1110000
Cons ci ratio: 1.890596e-03	ci left: 7.940367e-01	ci right 7.955402e-01	k: 882216	n:1110000
KS ci ratio: 1.296796e-01	ci left: 7.691758e-04	ci right 8.766997e-04	k: 912	n:1110000
NBPF1   1110000 perm   845 sec   (1314 perm/sec)   p_kst 8.216216e-04   p_cons 7.947892e-01   p_joint 2.909009e-03

Joint ci ratio: 6.851364e-02	ci left: 2.814417e-03	ci right 3.014953e-03	k: 3263	n:1120000
Cons ci ratio: 1.882065e-03	ci left: 7.940527e-01	ci right 7.955494e-01	k: 890178	n:1120000
KS ci ratio: 1.286963e-01	ci left: 7.744044e-04	ci right 8.817756e-04	k: 926	n:1120000
NBPF1   1120000 perm   857 sec   (1307 perm/sec)   p_kst 8.267857e-04   p_cons 7.948018e-01   p_joint 2.913393e-03

Joint ci ratio: 6.823208e-02	ci left: 2.812996e-03	ci right 3.012575e-03	k: 3290	n:1130000
Cons ci ratio: 1.873754e-03	ci left: 7.940498e-01	ci right 7.955399e-01	k: 898119	n:1130000
KS ci ratio: 1.280077e-01	ci left: 7.761167e-04	ci right 8.831058e-04	k: 936	n:1130000
NBPF1   1130000 perm   870 sec   (1299 perm/sec)   p_kst 8.283186e-04   p_cons 7.947956e-01   p_joint 2.911504e-03

Joint ci ratio: 8.119654e-02	ci left: 1.957487e-03	ci right 2.124007e-03	k: 2325	n:1140000
Cons ci ratio: 1.865487e-03	ci left: 7.940584e-01	ci right 7.955419e-01	k: 906073	n:1140000
KS ci ratio: 1.337762e-01	ci left: 7.022766e-04	ci right 8.037964e-04	k: 857	n:1140000
NBPF1   1140000 perm   883 sec   (1292 perm/sec)   p_kst 7.517544e-04   p_cons 7.948009e-01   p_joint 2.039474e-03

Joint ci ratio: 8.086698e-02	ci left: 1.956652e-03	ci right 2.122393e-03	k: 2344	n:1150000
Cons ci ratio: 1.856814e-03	ci left: 7.941574e-01	ci right 7.956342e-01	k: 914131	n:1150000
KS ci ratio: 1.331568e-01	ci left: 7.028941e-04	ci right 8.039955e-04	k: 865	n:1150000
NBPF1   1150000 perm   895 sec   (1285 perm/sec)   p_kst 7.521739e-04   p_cons 7.948965e-01   p_joint 2.038261e-03

Joint ci ratio: 8.043917e-02	ci left: 1.960902e-03	ci right 2.126083e-03	k: 2369	n:1160000
Cons ci ratio: 1.848700e-03	ci left: 7.941770e-01	ci right 7.956474e-01	k: 922099	n:1160000
KS ci ratio: 1.325460e-01	ci left: 7.035020e-04	ci right 8.041901e-04	k: 873	n:1160000
NBPF1   1160000 perm   908 sec   (1278 perm/sec)   p_kst 7.525862e-04   p_cons 7.949129e-01   p_joint 2.042241e-03

Joint ci ratio: 8.146228e-02	ci left: 1.894733e-03	ci right 2.056466e-03	k: 2310	n:1170000
Cons ci ratio: 1.840914e-03	ci left: 7.941569e-01	ci right 7.956211e-01	k: 930021	n:1170000
KS ci ratio: 1.319434e-01	ci left: 7.041006e-04	ci right 8.043804e-04	k: 881	n:1170000
NBPF1   1170000 perm   921 sec   (1271 perm/sec)   p_kst 7.529915e-04   p_cons 7.948897e-01   p_joint 1.974359e-03

Joint ci ratio: 7.636709e-02	ci left: 2.142865e-03	ci right 2.313830e-03	k: 2628	n:1180000
Cons ci ratio: 1.832758e-03	ci left: 7.942204e-01	ci right 7.956782e-01	k: 938041	n:1180000
KS ci ratio: 1.314230e-01	ci left: 7.038704e-04	ci right 8.036911e-04	k: 888	n:1180000
NBPF1   1180000 perm   934 sec   (1264 perm/sec)   p_kst 7.525424e-04   p_cons 7.949500e-01   p_joint 2.227119e-03

Joint ci ratio: 7.698659e-02	ci left: 2.090238e-03	ci right 2.258418e-03	k: 2586	n:1190000
Cons ci ratio: 1.825119e-03	ci left: 7.942096e-01	ci right 7.956612e-01	k: 945974	n:1190000
KS ci ratio: 1.312021e-01	ci left: 7.003937e-04	ci right 7.995413e-04	k: 891	n:1190000
NBPF1   1190000 perm   946 sec   (1257 perm/sec)   p_kst 7.487395e-04   p_cons 7.949361e-01   p_joint 2.173109e-03

Joint ci ratio: 7.748413e-02	ci left: 2.045849e-03	ci right 2.211569e-03	k: 2553	n:1200000
Cons ci ratio: 1.817207e-03	ci left: 7.942649e-01	ci right 7.957104e-01	k: 953986	n:1200000
KS ci ratio: 1.308360e-01	ci left: 6.985871e-04	ci right 7.971817e-04	k: 896	n:1200000
NBPF1   1200000 perm   959 sec   (1251 perm/sec)   p_kst 7.466667e-04   p_cons 7.949883e-01   p_joint 2.127500e-03

Joint ci ratio: 7.712253e-02	ci left: 2.048392e-03	ci right 2.213510e-03	k: 2577	n:1210000
Cons ci ratio: 1.809856e-03	ci left: 7.942365e-01	ci right 7.956761e-01	k: 961898	n:1210000
KS ci ratio: 1.301126e-01	ci left: 7.008084e-04	ci right 7.991274e-04	k: 906	n:1210000
NBPF1   1210000 perm   973 sec   (1244 perm/sec)   p_kst 7.487603e-04   p_cons 7.949570e-01   p_joint 2.129752e-03

Joint ci ratio: 7.686964e-02	ci left: 2.045268e-03	ci right 2.209569e-03	k: 2594	n:1220000
Cons ci ratio: 1.802182e-03	ci left: 7.942834e-01	ci right 7.957169e-01	k: 969901	n:1220000
KS ci ratio: 1.298268e-01	ci left: 6.982361e-04	ci right 7.959625e-04	k: 910	n:1220000
NBPF1   1220000 perm   986 sec   (1238 perm/sec)   p_kst 7.459016e-04   p_cons 7.950008e-01   p_joint 2.126230e-03

Joint ci ratio: 7.716888e-02	ci left: 2.012692e-03	ci right 2.175033e-03	k: 2574	n:1230000
Cons ci ratio: 1.794706e-03	ci left: 7.943107e-01	ci right 7.957383e-01	k: 977881	n:1230000
KS ci ratio: 1.294722e-01	ci left: 6.964926e-04	ci right 7.936881e-04	k: 915	n:1230000
NBPF1   1230000 perm   999 sec   (1231 perm/sec)   p_kst 7.439024e-04   p_cons 7.950252e-01   p_joint 2.092683e-03

Joint ci ratio: 7.679685e-02	ci left: 2.016234e-03	ci right 2.178042e-03	k: 2599	n:1240000
Cons ci ratio: 1.787487e-03	ci left: 7.943077e-01	ci right 7.957296e-01	k: 985824	n:1240000
KS ci ratio: 1.287710e-01	ci left: 6.986798e-04	ci right 7.956122e-04	k: 925	n:1240000
NBPF1   1240000 perm   1012 sec   (1225 perm/sec)   p_kst 7.459677e-04   p_cons 7.950194e-01   p_joint 2.095968e-03

Joint ci ratio: 7.653248e-02	ci left: 2.014228e-03	ci right 2.175293e-03	k: 2617	n:1250000
Cons ci ratio: 1.780498e-03	ci left: 7.942784e-01	ci right 7.956946e-01	k: 993734	n:1250000
KS ci ratio: 1.282871e-01	ci left: 6.985103e-04	ci right 7.950273e-04	k: 932	n:1250000
NBPF1   1250000 perm   1026 sec   (1219 perm/sec)   p_kst 7.456000e-04   p_cons 7.949872e-01   p_joint 2.093600e-03

Joint ci ratio: 7.625633e-02	ci left: 2.013033e-03	ci right 2.173397e-03	k: 2636	n:1260000
Cons ci ratio: 1.773371e-03	ci left: 7.942901e-01	ci right 7.957006e-01	k: 1001695	n:1260000
KS ci ratio: 1.276727e-01	ci left: 6.998807e-04	ci right 7.960889e-04	k: 941	n:1260000
NBPF1   1260000 perm   1039 sec   (1213 perm/sec)   p_kst 7.468254e-04   p_cons 7.949960e-01   p_joint 2.092063e-03

Joint ci ratio: 7.596881e-02	ci left: 2.012630e-03	ci right 2.172331e-03	k: 2656	n:1270000
Cons ci ratio: 1.766217e-03	ci left: 7.943221e-01	ci right 7.957270e-01	k: 1009682	n:1270000
KS ci ratio: 1.271340e-01	ci left: 7.004683e-04	ci right 7.963203e-04	k: 949	n:1270000
NBPF1   1270000 perm   1053 sec   (1206 perm/sec)   p_kst 7.472441e-04   p_cons 7.950252e-01   p_joint 2.091339e-03

Joint ci ratio: 7.575545e-02	ci left: 2.008403e-03	ci right 2.167301e-03	k: 2671	n:1280000
Cons ci ratio: 1.759698e-03	ci left: 7.942519e-01	ci right 7.956515e-01	k: 1017539	n:1280000
KS ci ratio: 1.268008e-01	ci left: 6.987781e-04	ci right 7.941294e-04	k: 954	n:1280000
NBPF1   1280000 perm   1066 sec   (1200 perm/sec)   p_kst 7.453125e-04   p_cons 7.949523e-01   p_joint 2.086719e-03

Joint ci ratio: 7.625819e-02	ci left: 1.966216e-03	ci right 2.122855e-03	k: 2636	n:1290000
Cons ci ratio: 1.752941e-03	ci left: 7.942402e-01	ci right 7.956344e-01	k: 1025470	n:1290000
KS ci ratio: 1.262730e-01	ci left: 6.993664e-04	ci right 7.943711e-04	k: 962	n:1290000
NBPF1   1290000 perm   1080 sec   (1194 perm/sec)   p_kst 7.457364e-04   p_cons 7.949380e-01   p_joint 2.043411e-03

Joint ci ratio: 7.602802e-02	ci left: 1.963165e-03	ci right 2.119067e-03	k: 2652	n:1300000
Cons ci ratio: 1.746014e-03	ci left: 7.942750e-01	ci right 7.956637e-01	k: 1033461	n:1300000
KS ci ratio: 1.255578e-01	ci left: 7.021818e-04	ci right 7.969884e-04	k: 973	n:1300000
NBPF1   1300000 perm   1094 sec   (1188 perm/sec)   p_kst 7.484615e-04   p_cons 7.949700e-01   p_joint 2.040000e-03

Joint ci ratio: 7.577148e-02	ci left: 1.961658e-03	ci right 2.116892e-03	k: 2670	n:1310000
Cons ci ratio: 1.739499e-03	ci left: 7.942473e-01	ci right 7.956308e-01	k: 1041371	n:1310000
KS ci ratio: 1.252369e-01	ci left: 7.005187e-04	ci right 7.948410e-04	k: 978	n:1310000
NBPF1   1310000 perm   1108 sec   (1182 perm/sec)   p_kst 7.465649e-04   p_cons 7.949397e-01   p_joint 2.038168e-03

Joint ci ratio: 7.594320e-02	ci left: 1.937878e-03	ci right 2.091593e-03	k: 2658	n:1320000
Cons ci ratio: 1.732952e-03	ci left: 7.942397e-01	ci right 7.956181e-01	k: 1049307	n:1320000
KS ci ratio: 1.247283e-01	ci left: 7.010828e-04	ci right 7.950695e-04	k: 986	n:1320000
NBPF1   1320000 perm   1122 sec   (1176 perm/sec)   p_kst 7.469697e-04   p_cons 7.949295e-01   p_joint 2.013636e-03

Joint ci ratio: 7.565919e-02	ci left: 1.938060e-03	ci right 2.091189e-03	k: 2678	n:1330000
Cons ci ratio: 1.726366e-03	ci left: 7.942534e-01	ci right 7.956265e-01	k: 1057271	n:1330000
KS ci ratio: 1.243509e-01	ci left: 7.001822e-04	ci right 7.937433e-04	k: 992	n:1330000
NBPF1   1330000 perm   1136 sec   (1171 perm/sec)   p_kst 7.458647e-04   p_cons 7.949406e-01   p_joint 2.013534e-03

Joint ci ratio: 7.563148e-02	ci left: 1.925061e-03	ci right 2.077105e-03	k: 2680	n:1340000
Cons ci ratio: 1.719957e-03	ci left: 7.942475e-01	ci right 7.956154e-01	k: 1065209	n:1340000
KS ci ratio: 1.238530e-01	ci left: 7.007418e-04	ci right 7.939752e-04	k: 1000	n:1340000
NBPF1   1340000 perm   1150 sec   (1165 perm/sec)   p_kst 7.462687e-04   p_cons 7.949321e-01   p_joint 2.000000e-03

Joint ci ratio: 7.285292e-02	ci left: 2.062021e-03	ci right 2.218646e-03	k: 2888	n:1350000
Cons ci ratio: 1.713786e-03	ci left: 7.942097e-01	ci right 7.955727e-01	k: 1073104	n:1350000
KS ci ratio: 1.234836e-01	ci left: 6.998581e-04	ci right 7.926758e-04	k: 1006	n:1350000
NBPF1   1350000 perm   1165 sec   (1159 perm/sec)   p_kst 7.451852e-04   p_cons 7.948919e-01   p_joint 2.139259e-03

Joint ci ratio: 7.246491e-02	ci left: 2.069239e-03	ci right 2.225540e-03	k: 2919	n:1360000
Cons ci ratio: 1.707528e-03	ci left: 7.942020e-01	ci right 7.955600e-01	k: 1081039	n:1360000
KS ci ratio: 1.229959e-01	ci left: 7.004131e-04	ci right 7.929109e-04	k: 1014	n:1360000
NBPF1   1360000 perm   1179 sec   (1153 perm/sec)   p_kst 7.455882e-04   p_cons 7.948816e-01   p_joint 2.146324e-03

Joint ci ratio: 7.225500e-02	ci left: 2.066319e-03	ci right 2.221929e-03	k: 2936	n:1370000
Cons ci ratio: 1.701573e-03	ci left: 7.941491e-01	ci right 7.955022e-01	k: 1088912	n:1370000
KS ci ratio: 1.227544e-01	ci left: 6.981305e-04	ci right 7.901327e-04	k: 1018	n:1370000
NBPF1   1370000 perm   1193 sec   (1148 perm/sec)   p_kst 7.430657e-04   p_cons 7.948263e-01   p_joint 2.143066e-03

Joint ci ratio: 7.198588e-02	ci left: 2.067001e-03	ci right 2.222057e-03	k: 2958	n:1380000
Cons ci ratio: 1.695323e-03	ci left: 7.941659e-01	ci right 7.955141e-01	k: 1096880	n:1380000
KS ci ratio: 1.223947e-01	ci left: 6.972861e-04	ci right 7.888882e-04	k: 1024	n:1380000
NBPF1   1380000 perm   1208 sec   (1142 perm/sec)   p_kst 7.420290e-04   p_cons 7.948406e-01   p_joint 2.143478e-03

Joint ci ratio: 7.167157e-02	ci left: 2.070499e-03	ci right 2.225112e-03	k: 2984	n:1390000
Cons ci ratio: 1.689084e-03	ci left: 7.941932e-01	ci right 7.955365e-01	k: 1104863	n:1390000
KS ci ratio: 1.215670e-01	ci left: 7.020344e-04	ci right 7.935917e-04	k: 1038	n:1390000
NBPF1   1390000 perm   1223 sec   (1137 perm/sec)   p_kst 7.467626e-04   p_cons 7.948655e-01   p_joint 2.146763e-03

Joint ci ratio: 7.207247e-02	ci left: 2.032561e-03	ci right 2.185225e-03	k: 2951	n:1400000
Cons ci ratio: 1.683025e-03	ci left: 7.941987e-01	ci right 7.955372e-01	k: 1112816	n:1400000
KS ci ratio: 1.211017e-01	ci left: 7.025607e-04	ci right 7.938108e-04	k: 1046	n:1400000
NBPF1   1400000 perm   1237 sec   (1132 perm/sec)   p_kst 7.471429e-04   p_cons 7.948686e-01   p_joint 2.107857e-03

Joint ci ratio: 7.220795e-02	ci left: 2.010484e-03	ci right 2.161786e-03	k: 2940	n:1410000
Cons ci ratio: 1.677020e-03	ci left: 7.942063e-01	ci right 7.955400e-01	k: 1120772	n:1410000
KS ci ratio: 1.208136e-01	ci left: 7.010168e-04	ci right 7.918343e-04	k: 1051	n:1410000
NBPF1   1410000 perm   1252 sec   (1126 perm/sec)   p_kst 7.453901e-04   p_cons 7.948738e-01   p_joint 2.085106e-03

Joint ci ratio: 7.198806e-02	ci left: 2.008773e-03	ci right 2.159466e-03	k: 2958	n:1420000
Cons ci ratio: 1.670977e-03	ci left: 7.942335e-01	ci right 7.955625e-01	k: 1128756	n:1420000
KS ci ratio: 1.203001e-01	ci left: 7.022270e-04	ci right 7.927871e-04	k: 1060	n:1420000
NBPF1   1420000 perm   1267 sec   (1121 perm/sec)   p_kst 7.464789e-04   p_cons 7.948986e-01   p_joint 2.083099e-03

Joint ci ratio: 7.214757e-02	ci left: 1.985798e-03	ci right 2.135111e-03	k: 2945	n:1430000
Cons ci ratio: 1.665181e-03	ci left: 7.942247e-01	ci right 7.955490e-01	k: 1136689	n:1430000
KS ci ratio: 1.199614e-01	ci left: 7.013860e-04	ci right 7.915649e-04	k: 1066	n:1430000
NBPF1   1430000 perm   1282 sec   (1116 perm/sec)   p_kst 7.454545e-04   p_cons 7.948874e-01   p_joint 2.059441e-03

Joint ci ratio: 7.194040e-02	ci left: 1.983600e-03	ci right 2.132303e-03	k: 2962	n:1440000
Cons ci ratio: 1.659339e-03	ci left: 7.942368e-01	ci right 7.955565e-01	k: 1144652	n:1440000
KS ci ratio: 1.195699e-01	ci left: 7.012307e-04	ci right 7.910746e-04	k: 1073	n:1440000
NBPF1   1440000 perm   1297 sec   (1110 perm/sec)   p_kst 7.451389e-04   p_cons 7.948972e-01   p_joint 2.056944e-03

Joint ci ratio: 7.191659e-02	ci left: 1.971274e-03	ci right 2.119002e-03	k: 2964	n:1450000
Cons ci ratio: 1.653705e-03	ci left: 7.942198e-01	ci right 7.955349e-01	k: 1152573	n:1450000
KS ci ratio: 1.192373e-01	ci left: 7.004090e-04	ci right 7.898804e-04	k: 1079	n:1450000
NBPF1   1450000 perm   1312 sec   (1105 perm/sec)   p_kst 7.441379e-04   p_cons 7.948779e-01   p_joint 2.044138e-03

Joint ci ratio: 7.235860e-02	ci left: 1.933558e-03	ci right 2.079387e-03	k: 2928	n:1460000
Cons ci ratio: 1.648094e-03	ci left: 7.942098e-01	ci right 7.955205e-01	k: 1160504	n:1460000
KS ci ratio: 1.187981e-01	ci left: 7.009280e-04	ci right 7.901128e-04	k: 1087	n:1460000
NBPF1   1460000 perm   1327 sec   (1100 perm/sec)   p_kst 7.445205e-04   p_cons 7.948658e-01   p_joint 2.005479e-03

Joint ci ratio: 7.217415e-02	ci left: 1.930425e-03	ci right 2.075630e-03	k: 2943	n:1470000
Cons ci ratio: 1.642590e-03	ci left: 7.941898e-01	ci right 7.954961e-01	k: 1168420	n:1470000
KS ci ratio: 1.186349e-01	ci left: 6.981399e-04	ci right 7.868393e-04	k: 1090	n:1470000
NBPF1   1470000 perm   1342 sec   (1095 perm/sec)   p_kst 7.414966e-04   p_cons 7.948435e-01   p_joint 2.002041e-03

Joint ci ratio: 7.194240e-02	ci left: 1.929988e-03	ci right 2.074675e-03	k: 2962	n:1480000
Cons ci ratio: 1.636819e-03	ci left: 7.942344e-01	ci right 7.955361e-01	k: 1176431	n:1480000
KS ci ratio: 1.183100e-01	ci left: 6.973567e-04	ci right 7.856970e-04	k: 1096	n:1480000
NBPF1   1480000 perm   1358 sec   (1090 perm/sec)   p_kst 7.405405e-04   p_cons 7.948858e-01   p_joint 2.001351e-03

Joint ci ratio: 7.172492e-02	ci left: 1.928898e-03	ci right 2.073048e-03	k: 2980	n:1490000
Cons ci ratio: 1.631458e-03	ci left: 7.942084e-01	ci right 7.955059e-01	k: 1184338	n:1490000
KS ci ratio: 1.179344e-01	ci left: 6.972356e-04	ci right 7.852606e-04	k: 1103	n:1490000
NBPF1   1490000 perm   1373 sec   (1085 perm/sec)   p_kst 7.402685e-04   p_cons 7.948577e-01   p_joint 2.000000e-03

Joint ci ratio: 7.146166e-02	ci left: 1.930443e-03	ci right 2.074157e-03	k: 3002	n:1500000
Cons ci ratio: 1.625953e-03	ci left: 7.942222e-01	ci right 7.955153e-01	k: 1192304	n:1500000
KS ci ratio: 1.174565e-01	ci left: 6.984108e-04	ci right 7.862021e-04	k: 1112	n:1500000
NBPF1   1500000 perm   1389 sec   (1080 perm/sec)   p_kst 7.413333e-04   p_cons 7.948693e-01   p_joint 2.001333e-03

Joint ci ratio: 7.130765e-02	ci left: 1.926114e-03	ci right 2.069184e-03	k: 3015	n:1510000
Cons ci ratio: 1.620684e-03	ci left: 7.941994e-01	ci right 7.954882e-01	k: 1200215	n:1510000
KS ci ratio: 1.172462e-01	ci left: 6.963567e-04	ci right 7.837222e-04	k: 1116	n:1510000
NBPF1   1510000 perm   1405 sec   (1075 perm/sec)   p_kst 7.390728e-04   p_cons 7.948444e-01   p_joint 1.996689e-03

Joint ci ratio: 7.104894e-02	ci left: 1.927658e-03	ci right 2.070302e-03	k: 3037	n:1520000
Cons ci ratio: 1.615411e-03	ci left: 7.941881e-01	ci right 7.954727e-01	k: 1208143	n:1520000
KS ci ratio: 1.168805e-01	ci left: 6.962458e-04	ci right 7.833062e-04	k: 1123	n:1520000
NBPF1   1520000 perm   1420 sec   (1070 perm/sec)   p_kst 7.388158e-04   p_cons 7.948309e-01   p_joint 1.998026e-03

Joint ci ratio: 7.086267e-02	ci left: 1.925331e-03	ci right 2.067414e-03	k: 3053	n:1530000
Cons ci ratio: 1.610234e-03	ci left: 7.941677e-01	ci right 7.954482e-01	k: 1216057	n:1530000
KS ci ratio: 1.166215e-01	ci left: 6.948677e-04	ci right 7.815500e-04	k: 1128	n:1530000
NBPF1   1530000 perm   1436 sec   (1065 perm/sec)   p_kst 7.372549e-04   p_cons 7.948085e-01   p_joint 1.995425e-03

Joint ci ratio: 7.436031e-02	ci left: 1.734304e-03	ci right 1.868880e-03	k: 2773	n:1540000
Cons ci ratio: 1.661341e-03	ci left: 7.826738e-01	ci right 7.839758e-01	k: 1206321	n:1540000
KS ci ratio: 1.162105e-01	ci left: 6.953991e-04	ci right 7.818210e-04	k: 1136	n:1540000
NBPF1   1540000 perm   1452 sec   (1061 perm/sec)   p_kst 7.376623e-04   p_cons 7.833253e-01   p_joint 1.800649e-03

Joint ci ratio: 7.414683e-02	ci left: 1.733246e-03	ci right 1.867336e-03	k: 2789	n:1550000
Cons ci ratio: 1.655895e-03	ci left: 7.826919e-01	ci right 7.839896e-01	k: 1214179	n:1550000
KS ci ratio: 1.159051e-01	ci left: 6.946713e-04	ci right 7.807603e-04	k: 1142	n:1550000
NBPF1   1550000 perm   1468 sec   (1056 perm/sec)   p_kst 7.367742e-04   p_cons 7.833413e-01   p_joint 1.799355e-03

Joint ci ratio: 7.428074e-02	ci left: 1.715843e-03	ci right 1.848838e-03	k: 2779	n:1560000
Cons ci ratio: 1.650524e-03	ci left: 7.827053e-01	ci right 7.839988e-01	k: 1222030	n:1560000
KS ci ratio: 1.154514e-01	ci left: 6.958206e-04	ci right 7.816914e-04	k: 1151	n:1560000
NBPF1   1560000 perm   1484 sec   (1051 perm/sec)   p_kst 7.378205e-04   p_cons 7.833526e-01   p_joint 1.781410e-03

Joint ci ratio: 7.421433e-02	ci left: 1.708040e-03	ci right 1.840306e-03	k: 2784	n:1570000
Cons ci ratio: 1.645604e-03	ci left: 7.826362e-01	ci right 7.839258e-01	k: 1229752	n:1570000
KS ci ratio: 1.151520e-01	ci left: 6.951000e-04	ci right 7.806444e-04	k: 1157	n:1570000
NBPF1   1570000 perm   1500 sec   (1047 perm/sec)   p_kst 7.369427e-04   p_cons 7.832815e-01   p_joint 1.773248e-03

Joint ci ratio: 7.084168e-02	ci left: 1.865644e-03	ci right 2.003280e-03	k: 3055	n:1580000
Cons ci ratio: 1.640296e-03	ci left: 7.826574e-01	ci right 7.839428e-01	k: 1237615	n:1580000
KS ci ratio: 1.149043e-01	ci left: 6.937741e-04	ci right 7.789592e-04	k: 1162	n:1580000
NBPF1   1580000 perm   1516 sec   (1042 perm/sec)   p_kst 7.354430e-04   p_cons 7.833006e-01   p_joint 1.933544e-03

Joint ci ratio: 7.066855e-02	ci left: 1.863178e-03	ci right 2.000282e-03	k: 3070	n:1590000
Cons ci ratio: 1.635126e-03	ci left: 7.826600e-01	ci right 7.839414e-01	k: 1245449	n:1590000
KS ci ratio: 1.146091e-01	ci left: 6.930760e-04	ci right 7.779419e-04	k: 1168	n:1590000
NBPF1   1590000 perm   1533 sec   (1037 perm/sec)   p_kst 7.345912e-04   p_cons 7.833013e-01   p_joint 1.930818e-03

Joint ci ratio: 7.039392e-02	ci left: 1.866269e-03	ci right 2.003044e-03	k: 3094	n:1600000
Cons ci ratio: 1.629994e-03	ci left: 7.826652e-01	ci right 7.839426e-01	k: 1253287	n:1600000
KS ci ratio: 1.143161e-01	ci left: 6.923869e-04	ci right 7.769371e-04	k: 1174	n:1600000
NBPF1   1600000 perm   1549 sec   (1033 perm/sec)   p_kst 7.337500e-04   p_cons 7.833044e-01   p_joint 1.933750e-03

Joint ci ratio: 7.032608e-02	ci left: 1.858338e-03	ci right 1.994396e-03	k: 3100	n:1610000
Cons ci ratio: 1.624867e-03	ci left: 7.826789e-01	ci right 7.839523e-01	k: 1261139	n:1610000
KS ci ratio: 1.140254e-01	ci left: 6.917067e-04	ci right 7.759445e-04	k: 1180	n:1610000
NBPF1   1610000 perm   1565 sec   (1029 perm/sec)   p_kst 7.329193e-04   p_cons 7.833161e-01   p_joint 1.925466e-03

Joint ci ratio: 7.022447e-02	ci left: 1.852324e-03	ci right 1.987738e-03	k: 3109	n:1620000
Cons ci ratio: 1.619854e-03	ci left: 7.826790e-01	ci right 7.839484e-01	k: 1268969	n:1620000
KS ci ratio: 1.136890e-01	ci left: 6.916348e-04	ci right 7.755987e-04	k: 1187	n:1620000
NBPF1   1620000 perm   1581 sec   (1024 perm/sec)   p_kst 7.327160e-04   p_cons 7.833142e-01   p_joint 1.919136e-03

Joint ci ratio: 7.016839e-02	ci left: 1.843974e-03	ci right 1.978665e-03	k: 3114	n:1630000
Cons ci ratio: 1.614714e-03	ci left: 7.827152e-01	ci right 7.839807e-01	k: 1276858	n:1630000
KS ci ratio: 1.130718e-01	ci left: 6.951410e-04	ci right 7.790419e-04	k: 1200	n:1630000
NBPF1   1630000 perm   1598 sec   (1020 perm/sec)   p_kst 7.361963e-04   p_cons 7.833485e-01   p_joint 1.910429e-03

Joint ci ratio: 7.006746e-02	ci left: 1.838121e-03	ci right 1.972184e-03	k: 3123	n:1640000
Cons ci ratio: 1.609733e-03	ci left: 7.827279e-01	ci right 7.839894e-01	k: 1284709	n:1640000
KS ci ratio: 1.127905e-01	ci left: 6.944575e-04	ci right 7.780535e-04	k: 1206	n:1640000
NBPF1   1640000 perm   1615 sec   (1016 perm/sec)   p_kst 7.353659e-04   p_cons 7.833591e-01   p_joint 1.904268e-03

Joint ci ratio: 6.976645e-02	ci left: 1.843059e-03	ci right 1.976881e-03	k: 3150	n:1650000
Cons ci ratio: 1.604930e-03	ci left: 7.827124e-01	ci right 7.839702e-01	k: 1292514	n:1650000
KS ci ratio: 1.123722e-01	ci left: 6.955497e-04	ci right 7.789461e-04	k: 1215	n:1650000
NBPF1   1650000 perm   1631 sec   (1011 perm/sec)   p_kst 7.363636e-04   p_cons 7.833418e-01   p_joint 1.909091e-03

Joint ci ratio: 6.955706e-02	ci left: 1.843203e-03	ci right 1.976617e-03	k: 3169	n:1660000
Cons ci ratio: 1.600152e-03	ci left: 7.827008e-01	ci right 7.839548e-01	k: 1300325	n:1660000
KS ci ratio: 1.120502e-01	ci left: 6.954581e-04	ci right 7.785888e-04	k: 1222	n:1660000
NBPF1   1660000 perm   1648 sec   (1007 perm/sec)   p_kst 7.361446e-04   p_cons 7.833283e-01   p_joint 1.909036e-03

Joint ci ratio: 7.000135e-02	ci left: 1.808630e-03	ci right 1.940412e-03	k: 3129	n:1670000
Cons ci ratio: 1.595521e-03	ci left: 7.826672e-01	ci right 7.839175e-01	k: 1308099	n:1670000
KS ci ratio: 1.118219e-01	ci left: 6.942039e-04	ci right 7.770045e-04	k: 1227	n:1670000
NBPF1   1670000 perm   1665 sec   (1003 perm/sec)   p_kst 7.347305e-04   p_cons 7.832928e-01   p_joint 1.873653e-03

Joint ci ratio: 6.972332e-02	ci left: 1.812486e-03	ci right 1.944003e-03	k: 3154	n:1680000
Cons ci ratio: 1.590837e-03	ci left: 7.826536e-01	ci right 7.839002e-01	k: 1315906	n:1680000
KS ci ratio: 1.112794e-01	ci left: 6.970153e-04	ci right 7.797214e-04	k: 1239	n:1680000
NBPF1   1680000 perm   1682 sec   (999 perm/sec)   p_kst 7.375000e-04   p_cons 7.832774e-01   p_joint 1.877381e-03

Joint ci ratio: 7.037478e-02	ci left: 1.768041e-03	ci right 1.897581e-03	k: 3096	n:1690000
Cons ci ratio: 1.586134e-03	ci left: 7.826532e-01	ci right 7.838961e-01	k: 1323735	n:1690000
KS ci ratio: 1.112348e-01	ci left: 6.934661e-04	ci right 7.757160e-04	k: 1240	n:1690000
NBPF1   1690000 perm   1699 sec   (995 perm/sec)   p_kst 7.337278e-04   p_cons 7.832751e-01   p_joint 1.831953e-03

Joint ci ratio: 7.019374e-02	ci left: 1.766887e-03	ci right 1.895996e-03	k: 3112	n:1700000
Cons ci ratio: 1.581388e-03	ci left: 7.826711e-01	ci right 7.839103e-01	k: 1331595	n:1700000
KS ci ratio: 1.109224e-01	ci left: 6.933902e-04	ci right 7.753849e-04	k: 1247	n:1700000
NBPF1   1700000 perm   1716 sec   (991 perm/sec)   p_kst 7.335294e-04   p_cons 7.832912e-01   p_joint 1.830588e-03

Joint ci ratio: 7.030734e-02	ci left: 1.750809e-03	ci right 1.878958e-03	k: 3102	n:1710000
Cons ci ratio: 1.576653e-03	ci left: 7.826952e-01	ci right 7.839308e-01	k: 1339466	n:1710000
KS ci ratio: 1.106126e-01	ci left: 6.933154e-04	ci right 7.750574e-04	k: 1254	n:1710000
NBPF1   1710000 perm   1734 sec   (986 perm/sec)   p_kst 7.333333e-04   p_cons 7.833135e-01   p_joint 1.814035e-03

Joint ci ratio: 7.106893e-02	ci left: 1.702934e-03	ci right 1.828985e-03	k: 3036	n:1720000
Cons ci ratio: 1.572085e-03	ci left: 7.826923e-01	ci right 7.839242e-01	k: 1347291	n:1720000
KS ci ratio: 1.103492e-01	ci left: 6.926765e-04	ci right 7.741360e-04	k: 1260	n:1720000
NBPF1   1720000 perm   1752 sec   (982 perm/sec)   p_kst 7.325581e-04   p_cons 7.833087e-01   p_joint 1.765116e-03

Joint ci ratio: 7.088249e-02	ci left: 1.702175e-03	ci right 1.827826e-03	k: 3052	n:1730000
Cons ci ratio: 1.567471e-03	ci left: 7.827079e-01	ci right 7.839363e-01	k: 1355148	n:1730000
KS ci ratio: 1.102183e-01	ci left: 6.903588e-04	ci right 7.714432e-04	k: 1263	n:1730000
NBPF1   1730000 perm   1771 sec   (977 perm/sec)   p_kst 7.300578e-04   p_cons 7.833225e-01   p_joint 1.764162e-03

Joint ci ratio: 7.069752e-02	ci left: 1.701425e-03	ci right 1.826679e-03	k: 3068	n:1740000
Cons ci ratio: 1.563019e-03	ci left: 7.826969e-01	ci right 7.839217e-01	k: 1362959	n:1740000
KS ci ratio: 1.098711e-01	ci left: 6.908624e-04	ci right 7.717338e-04	k: 1271	n:1740000
NBPF1   1740000 perm   1789 sec   (972 perm/sec)   p_kst 7.304598e-04   p_cons 7.833098e-01   p_joint 1.763218e-03

Joint ci ratio: 6.735090e-02	ci left: 1.866918e-03	ci right 1.997596e-03	k: 3380	n:1750000
Cons ci ratio: 1.558589e-03	ci left: 7.826894e-01	ci right 7.839108e-01	k: 1370776	n:1750000
KS ci ratio: 1.094417e-01	ci left: 6.924722e-04	ci right 7.731948e-04	k: 1281	n:1750000
NBPF1   1750000 perm   1807 sec   (969 perm/sec)   p_kst 7.320000e-04   p_cons 7.833006e-01   p_joint 1.931429e-03

Joint ci ratio: 6.730143e-02	ci left: 1.859103e-03	ci right 1.989135e-03	k: 3385	n:1760000
Cons ci ratio: 1.554262e-03	ci left: 7.826678e-01	ci right 7.838858e-01	k: 1378568	n:1760000
KS ci ratio: 1.092290e-01	ci left: 6.913009e-04	ci right 7.717203e-04	k: 1286	n:1760000
NBPF1   1760000 perm   1824 sec   (965 perm/sec)   p_kst 7.306818e-04   p_cons 7.832773e-01   p_joint 1.923295e-03

Joint ci ratio: 6.709366e-02	ci left: 1.860265e-03	ci right 1.989961e-03	k: 3406	n:1770000
Cons ci ratio: 1.549885e-03	ci left: 7.826652e-01	ci right 7.838797e-01	k: 1386393	n:1770000
KS ci ratio: 1.088070e-01	ci left: 6.928909e-04	ci right 7.731640e-04	k: 1296	n:1770000
NBPF1   1770000 perm   1842 sec   (961 perm/sec)   p_kst 7.322034e-04   p_cons 7.832729e-01   p_joint 1.924294e-03

Joint ci ratio: 6.961657e-02	ci left: 1.716178e-03	ci right 1.840508e-03	k: 3164	n:1780000
Cons ci ratio: 1.598103e-03	ci left: 7.710827e-01	ci right 7.723165e-01	k: 1373626	n:1780000
KS ci ratio: 1.084729e-01	ci left: 6.933706e-04	ci right 7.734368e-04	k: 1304	n:1780000
NBPF1   1780000 perm   1860 sec   (957 perm/sec)   p_kst 7.325843e-04   p_cons 7.717000e-01   p_joint 1.777528e-03

Joint ci ratio: 6.939761e-02	ci left: 1.717569e-03	ci right 1.841594e-03	k: 3184	n:1790000
Cons ci ratio: 1.593575e-03	ci left: 7.710973e-01	ci right 7.723276e-01	k: 1381366	n:1790000
KS ci ratio: 1.081008e-01	ci left: 6.943888e-04	ci right 7.742799e-04	k: 1313	n:1790000
NBPF1   1790000 perm   1879 sec   (953 perm/sec)   p_kst 7.335196e-04   p_cons 7.717128e-01   p_joint 1.778771e-03

Joint ci ratio: 6.922399e-02	ci left: 1.716762e-03	ci right 1.840405e-03	k: 3200	n:1800000
Cons ci ratio: 1.589230e-03	ci left: 7.710794e-01	ci right 7.723064e-01	k: 1389048	n:1800000
KS ci ratio: 1.077732e-01	ci left: 6.948555e-04	ci right 7.745428e-04	k: 1321	n:1800000
NBPF1   1800000 perm   1897 sec   (949 perm/sec)   p_kst 7.338889e-04   p_cons 7.716933e-01   p_joint 1.777778e-03

Joint ci ratio: 6.899797e-02	ci left: 1.718679e-03	ci right 1.842040e-03	k: 3221	n:1810000
Cons ci ratio: 1.584655e-03	ci left: 7.711210e-01	ci right 7.723444e-01	k: 1396837	n:1810000
KS ci ratio: 1.073678e-01	ci left: 6.963928e-04	ci right 7.759369e-04	k: 1331	n:1810000
NBPF1   1810000 perm   1915 sec   (945 perm/sec)   p_kst 7.353591e-04   p_cons 7.717331e-01   p_joint 1.779558e-03

Joint ci ratio: 6.880603e-02	ci left: 1.718955e-03	ci right 1.841979e-03	k: 3239	n:1820000
Cons ci ratio: 1.580279e-03	ci left: 7.711263e-01	ci right 7.723464e-01	k: 1404561	n:1820000
KS ci ratio: 1.071268e-01	ci left: 6.957747e-04	ci right 7.750587e-04	k: 1337	n:1820000
NBPF1   1820000 perm   1934 sec   (941 perm/sec)   p_kst 7.346154e-04   p_cons 7.717368e-01   p_joint 1.779670e-03

Joint ci ratio: 6.864736e-02	ci left: 1.717618e-03	ci right 1.840252e-03	k: 3254	n:1830000
Cons ci ratio: 1.575861e-03	ci left: 7.711491e-01	ci right 7.723658e-01	k: 1412317	n:1830000
KS ci ratio: 1.067683e-01	ci left: 6.967592e-04	ci right 7.758729e-04	k: 1346	n:1830000
NBPF1   1830000 perm   1952 sec   (937 perm/sec)   p_kst 7.355191e-04   p_cons 7.717579e-01   p_joint 1.778142e-03

Joint ci ratio: 6.843739e-02	ci left: 1.718966e-03	ci right 1.841306e-03	k: 3274	n:1840000
Cons ci ratio: 1.571603e-03	ci left: 7.711440e-01	ci right 7.723574e-01	k: 1420022	n:1840000
KS ci ratio: 1.064919e-01	ci left: 6.966753e-04	ci right 7.755619e-04	k: 1353	n:1840000
NBPF1   1840000 perm   1971 sec   (934 perm/sec)   p_kst 7.353261e-04   p_cons 7.717511e-01   p_joint 1.779348e-03

Joint ci ratio: 6.827086e-02	ci left: 1.718175e-03	ci right 1.840149e-03	k: 3290	n:1850000
Cons ci ratio: 1.567406e-03	ci left: 7.711329e-01	ci right 7.723430e-01	k: 1427716	n:1850000
KS ci ratio: 1.061397e-01	ci left: 6.976450e-04	ci right 7.763639e-04	k: 1362	n:1850000
NBPF1   1850000 perm   1989 sec   (930 perm/sec)   p_kst 7.362162e-04   p_cons 7.717384e-01   p_joint 1.778378e-03

Joint ci ratio: 6.802316e-02	ci left: 1.721621e-03	ci right 1.843379e-03	k: 3314	n:1860000
Cons ci ratio: 1.563102e-03	ci left: 7.711537e-01	ci right 7.723605e-01	k: 1435469	n:1860000
KS ci ratio: 1.056370e-01	ci left: 7.006984e-04	ci right 7.793641e-04	k: 1375	n:1860000
NBPF1   1860000 perm   2008 sec   (926 perm/sec)   p_kst 7.392473e-04   p_cons 7.717575e-01   p_joint 1.781720e-03

Joint ci ratio: 6.777814e-02	ci left: 1.725031e-03	ci right 1.846574e-03	k: 3338	n:1870000
Cons ci ratio: 1.558895e-03	ci left: 7.711603e-01	ci right 7.723640e-01	k: 1443196	n:1870000
KS ci ratio: 1.052172e-01	ci left: 7.026787e-04	ci right 7.812337e-04	k: 1386	n:1870000
NBPF1   1870000 perm   2026 sec   (923 perm/sec)   p_kst 7.411765e-04   p_cons 7.717626e-01   p_joint 1.785027e-03

Joint ci ratio: 6.677425e-02	ci left: 1.768677e-03	ci right 1.891377e-03	k: 3439	n:1880000
Cons ci ratio: 1.554745e-03	ci left: 7.711616e-01	ci right 7.723620e-01	k: 1450913	n:1880000
KS ci ratio: 1.049527e-01	ci left: 7.025666e-04	ci right 7.808995e-04	k: 1393	n:1880000
NBPF1   1880000 perm   2045 sec   (919 perm/sec)   p_kst 7.409574e-04   p_cons 7.717622e-01   p_joint 1.829255e-03

Joint ci ratio: 6.700916e-02	ci left: 1.746832e-03	ci right 1.868459e-03	k: 3415	n:1890000
Cons ci ratio: 1.550693e-03	ci left: 7.711480e-01	ci right 7.723453e-01	k: 1458602	n:1890000
KS ci ratio: 1.046902e-01	ci left: 7.024559e-04	ci right 7.805685e-04	k: 1400	n:1890000
NBPF1   1890000 perm   2064 sec   (916 perm/sec)   p_kst 7.407407e-04   p_cons 7.717471e-01   p_joint 1.806878e-03

Joint ci ratio: 6.706852e-02	ci left: 1.734533e-03	ci right 1.855415e-03	k: 3409	n:1900000
Cons ci ratio: 1.546659e-03	ci left: 7.711378e-01	ci right 7.723319e-01	k: 1466297	n:1900000
KS ci ratio: 1.043925e-01	ci left: 7.028592e-04	ci right 7.807808e-04	k: 1408	n:1900000
NBPF1   1900000 perm   2083 sec   (912 perm/sec)   p_kst 7.410526e-04   p_cons 7.717353e-01   p_joint 1.794211e-03

Joint ci ratio: 6.366192e-02	ci left: 1.918070e-03	ci right 2.044704e-03	k: 3783	n:1910000
Cons ci ratio: 1.542477e-03	ci left: 7.711685e-01	ci right 7.723595e-01	k: 1474070	n:1910000
KS ci ratio: 1.039873e-01	ci left: 7.047884e-04	ci right 7.826021e-04	k: 1419	n:1910000
NBPF1   1910000 perm   2102 sec   (909 perm/sec)   p_kst 7.429319e-04   p_cons 7.717644e-01   p_joint 1.980628e-03

Joint ci ratio: 6.370444e-02	ci left: 1.905517e-03	ci right 2.031409e-03	k: 3778	n:1920000
Cons ci ratio: 1.538397e-03	ci left: 7.711833e-01	ci right 7.723711e-01	k: 1481813	n:1920000
KS ci ratio: 1.037319e-01	ci left: 7.046688e-04	ci right 7.822665e-04	k: 1426	n:1920000
NBPF1   1920000 perm   2121 sec   (905 perm/sec)   p_kst 7.427083e-04   p_cons 7.717776e-01   p_joint 1.967708e-03

Joint ci ratio: 6.355329e-02	ci left: 1.904822e-03	ci right 2.030359e-03	k: 3796	n:1930000
Cons ci ratio: 1.534411e-03	ci left: 7.711839e-01	ci right 7.723686e-01	k: 1489529	n:1930000
KS ci ratio: 1.035146e-01	ci left: 7.040459e-04	ci right 7.814027e-04	k: 1432	n:1930000
NBPF1   1930000 perm   2141 sec   (901 perm/sec)   p_kst 7.419689e-04   p_cons 7.717767e-01   p_joint 1.966839e-03

Joint ci ratio: 6.337825e-02	ci left: 1.905656e-03	ci right 2.030889e-03	k: 3817	n:1940000
Cons ci ratio: 1.530419e-03	ci left: 7.711928e-01	ci right 7.723744e-01	k: 1497261	n:1940000
KS ci ratio: 1.031552e-01	ci left: 7.054382e-04	ci right 7.826626e-04	k: 1442	n:1940000
NBPF1   1940000 perm   2160 sec   (898 perm/sec)   p_kst 7.432990e-04   p_cons 7.717840e-01   p_joint 1.967526e-03

Joint ci ratio: 6.321289e-02	ci left: 1.905978e-03	ci right 2.030893e-03	k: 3837	n:1950000
Cons ci ratio: 1.526414e-03	ci left: 7.712118e-01	ci right 7.723904e-01	k: 1505013	n:1950000
KS ci ratio: 1.028704e-01	ci left: 7.058175e-04	ci right 7.828572e-04	k: 1450	n:1950000
NBPF1   1950000 perm   2181 sec   (894 perm/sec)   p_kst 7.435897e-04   p_cons 7.718015e-01   p_joint 1.967692e-03

Joint ci ratio: 6.304064e-02	ci left: 1.906799e-03	ci right 2.031415e-03	k: 3858	n:1960000
Cons ci ratio: 1.522519e-03	ci left: 7.712123e-01	ci right 7.723879e-01	k: 1512729	n:1960000
KS ci ratio: 1.025177e-01	ci left: 7.071874e-04	ci right 7.840960e-04	k: 1460	n:1960000
NBPF1   1960000 perm   2200 sec   (891 perm/sec)   p_kst 7.448980e-04   p_cons 7.718005e-01   p_joint 1.968367e-03

Joint ci ratio: 6.287791e-02	ci left: 1.907112e-03	ci right 2.031415e-03	k: 3878	n:1970000
Cons ci ratio: 1.518705e-03	ci left: 7.712011e-01	ci right 7.723737e-01	k: 1520422	n:1970000
KS ci ratio: 1.022730e-01	ci left: 7.070599e-04	ci right 7.837601e-04	k: 1467	n:1970000
NBPF1   1970000 perm   2220 sec   (887 perm/sec)   p_kst 7.446701e-04   p_cons 7.717878e-01   p_joint 1.968528e-03

Joint ci ratio: 6.340447e-02	ci left: 1.865666e-03	ci right 1.988323e-03	k: 3814	n:1980000
Cons ci ratio: 1.515015e-03	ci left: 7.711678e-01	ci right 7.723375e-01	k: 1528071	n:1980000
KS ci ratio: 1.020994e-01	ci left: 7.059496e-04	ci right 7.823915e-04	k: 1472	n:1980000
NBPF1   1980000 perm   2240 sec   (884 perm/sec)   p_kst 7.434343e-04   p_cons 7.717530e-01   p_joint 1.926263e-03

Joint ci ratio: 6.326371e-02	ci left: 1.864698e-03	ci right 1.987010e-03	k: 3831	n:1990000
Cons ci ratio: 1.511342e-03	ci left: 7.711368e-01	ci right 7.723036e-01	k: 1535724	n:1990000
KS ci ratio: 1.017888e-01	ci left: 7.068094e-04	ci right 7.830978e-04	k: 1481	n:1990000
NBPF1   1990000 perm   2259 sec   (881 perm/sec)   p_kst 7.442211e-04   p_cons 7.717206e-01   p_joint 1.925126e-03

Joint ci ratio: 6.363108e-02	ci left: 1.833723e-03	ci right 1.954727e-03	k: 3787	n:2000000
Cons ci ratio: 1.507523e-03	ci left: 7.711467e-01	ci right 7.723105e-01	k: 1543458	n:2000000
KS ci ratio: 1.016176e-01	ci left: 7.057118e-04	ci right 7.817459e-04	k: 1486	n:2000000
NBPF1   2000000 perm   2279 sec   (877 perm/sec)   p_kst 7.430000e-04   p_cons 7.717290e-01   p_joint 1.893500e-03

Joint ci ratio: 6.348881e-02	ci left: 1.832923e-03	ci right 1.953594e-03	k: 3804	n:2010000
Cons ci ratio: 1.503761e-03	ci left: 7.711500e-01	ci right 7.723109e-01	k: 1551179	n:2010000
KS ci ratio: 1.014133e-01	ci left: 7.051100e-04	ci right 7.809174e-04	k: 1492	n:2010000
NBPF1   2010000 perm   2299 sec   (874 perm/sec)   p_kst 7.422886e-04   p_cons 7.717308e-01   p_joint 1.892537e-03

Joint ci ratio: 6.428099e-02	ci left: 1.778543e-03	ci right 1.897150e-03	k: 3711	n:2020000
Cons ci ratio: 1.500214e-03	ci left: 7.711091e-01	ci right 7.722673e-01	k: 1558811	n:2020000
KS ci ratio: 1.010080e-01	ci left: 7.074097e-04	ci right 7.831424e-04	k: 1504	n:2020000
NBPF1   2020000 perm   2320 sec   (871 perm/sec)   p_kst 7.445545e-04   p_cons 7.716886e-01   p_joint 1.837129e-03

Joint ci ratio: 6.417744e-02	ci left: 1.775598e-03	ci right 1.893810e-03	k: 3723	n:2030000
Cons ci ratio: 1.496516e-03	ci left: 7.711101e-01	ci right 7.722654e-01	k: 1566527	n:2030000
KS ci ratio: 1.005413e-01	ci left: 7.106477e-04	ci right 7.863548e-04	k: 1518	n:2030000
NBPF1   2030000 perm   2339 sec   (868 perm/sec)   p_kst 7.477833e-04   p_cons 7.716882e-01   p_joint 1.833990e-03

Joint ci ratio: 6.494217e-02	ci left: 1.724934e-03	ci right 1.841193e-03	k: 3636	n:2040000
Cons ci ratio: 1.492980e-03	ci left: 7.710792e-01	ci right 7.722318e-01	k: 1574178	n:2040000
KS ci ratio: 1.003105e-01	ci left: 7.105093e-04	ci right 7.860176e-04	k: 1525	n:2040000
NBPF1   2040000 perm   2359 sec   (865 perm/sec)   p_kst 7.475490e-04   p_cons 7.716559e-01   p_joint 1.782353e-03

Joint ci ratio: 6.213058e-02	ci left: 1.877824e-03	ci right 1.998712e-03	k: 3972	n:2050000
Cons ci ratio: 1.489336e-03	ci left: 7.710804e-01	ci right 7.722301e-01	k: 1581894	n:2050000
KS ci ratio: 9.998333e-02	ci left: 7.117993e-04	ci right 7.871836e-04	k: 1535	n:2050000
NBPF1   2050000 perm   2379 sec   (862 perm/sec)   p_kst 7.487805e-04   p_cons 7.716556e-01   p_joint 1.937561e-03

Outputting figure to mutsig2_images.part000000000112/NBPF1.13_3517_2050000_0.00074878_0.77166_0.0019376.png
                gene_name: NBPF1
               theta_stop: 0.100 
                    nperm: 2050000 
                     p_ks: 0.00075 
        ci_ks_bounds_left: 0.00071 
       ci_ks_bounds_right: 0.00079 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0020 

Current progress: 11 percent done.
NCAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 4.289489e-02	ci left: 4.452043e-01	ci right 4.648220e-01	k: 4550	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
NCAM2   10000 perm   2 sec   (4374 perm/sec)   p_kst 3.140000e-02   p_cons 4.550000e-01   p_joint 7.660000e-02

Joint ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
Cons ci ratio: 3.014796e-02	ci left: 4.511264e-01	ci right 4.649858e-01	k: 9161	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
NCAM2   20000 perm   5 sec   (3923 perm/sec)   p_kst 3.115000e-02   p_cons 4.580500e-01   p_joint 5.670000e-02

Joint ci ratio: 8.052984e-02	ci left: 7.024467e-02	ci right 7.617163e-02	k: 2195	n:30000
Cons ci ratio: 2.469670e-02	ci left: 4.507847e-01	ci right 4.620904e-01	k: 13693	n:30000
KS ci ratio: 1.264617e-01	ci left: 2.906762e-02	ci right 3.302389e-02	k: 930	n:30000
NCAM2   30000 perm   8 sec   (3756 perm/sec)   p_kst 3.100000e-02   p_cons 4.564333e-01   p_joint 7.316667e-02

Joint ci ratio: 7.421419e-02	ci left: 6.277520e-02	ci right 6.763816e-02	k: 2607	n:40000
Cons ci ratio: 2.199789e-02	ci left: 4.376494e-01	ci right 4.474090e-01	k: 17701	n:40000
KS ci ratio: 1.113057e-01	ci left: 2.839861e-02	ci right 3.177007e-02	k: 1202	n:40000
NCAM2   40000 perm   11 sec   (3651 perm/sec)   p_kst 3.005000e-02   p_cons 4.425250e-01   p_joint 6.517500e-02

Joint ci ratio: 6.926546e-02	ci left: 5.811103e-02	ci right 6.230021e-02	k: 3009	n:50000
Cons ci ratio: 1.963605e-02	ci left: 4.391588e-01	ci right 4.478877e-01	k: 22176	n:50000
KS ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
NCAM2   50000 perm   14 sec   (3571 perm/sec)   p_kst 3.052000e-02   p_cons 4.435200e-01   p_joint 6.018000e-02

Outputting figure to mutsig2_images.part000000000112/NCAM2.13_2586_50000_0.03052_0.44352_0.06018.png
                gene_name: NCAM2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 12 percent done.
NCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
Cons ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
KS ci ratio: 2.006502e-02	ci left: 7.843160e-01	ci right 8.003134e-01	k: 7924	n:10000
NCOR2   10000 perm   3 sec   (2920 perm/sec)   p_kst 7.924000e-01   p_cons 2.956000e-01   p_joint 7.529000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR2.13_7757_10000_0.7924_0.2956_0.7529.png
                gene_name: NCOR2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 14 percent done.
NAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
Cons ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
NAV1   10000 perm   3 sec   (3467 perm/sec)   p_kst 2.628000e-01   p_cons 4.759000e-01   p_joint 3.691000e-01

Outputting figure to mutsig2_images.part000000000112/NAV1.12_5811_10000_0.2628_0.4759_0.3691.png
                gene_name: NAV1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 15 percent done.
NCKAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
Cons ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
KS ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
NCKAP1L   10000 perm   3 sec   (3843 perm/sec)   p_kst 5.705000e-01   p_cons 1.825000e-01   p_joint 3.776000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1L.12_3508_10000_0.5705_0.1825_0.3776.png
                gene_name: NCKAP1L
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
NCOA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.673692e-02	ci left: 1.621934e-01	ci right 1.769996e-01	k: 1695	n:10000
Cons ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
NCOA6   10000 perm   3 sec   (3273 perm/sec)   p_kst 6.220000e-02   p_cons 5.094000e-01   p_joint 1.695000e-01

Joint ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
Cons ci ratio: 2.847516e-02	ci left: 4.795504e-01	ci right 4.934535e-01	k: 9730	n:20000
KS ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
NCOA6   20000 perm   6 sec   (3096 perm/sec)   p_kst 6.240000e-02   p_cons 4.865000e-01   p_joint 1.255500e-01

Joint ci ratio: 5.373426e-02	ci left: 1.466031e-01	ci right 1.547314e-01	k: 4519	n:30000
Cons ci ratio: 2.318697e-02	ci left: 4.821951e-01	ci right 4.935405e-01	k: 14636	n:30000
KS ci ratio: 8.785268e-02	ci left: 5.949284e-02	ci right 6.499231e-02	k: 1866	n:30000
NCOA6   30000 perm   10 sec   (3019 perm/sec)   p_kst 6.220000e-02   p_cons 4.878667e-01   p_joint 1.506333e-01

Outputting figure to mutsig2_images.part000000000112/NCOA6.12_6244_30000_0.0622_0.48787_0.15063.png
                gene_name: NCOA6
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 18 percent done.
NBPF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
Cons ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
NBPF14   10000 perm   2 sec   (4478 perm/sec)   p_kst 9.660000e-02   p_cons 2.483000e-01   p_joint 1.109000e-01

Joint ci ratio: 7.543644e-02	ci left: 1.144449e-01	ci right 1.234662e-01	k: 2378	n:20000
Cons ci ratio: 4.900279e-02	ci left: 2.364241e-01	ci right 2.483509e-01	k: 4847	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
NBPF14   20000 perm   5 sec   (3986 perm/sec)   p_kst 9.680000e-02   p_cons 2.423500e-01   p_joint 1.189000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF14.11_2854_20000_0.0968_0.24235_0.1189.png
                gene_name: NBPF14
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
NCAPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
KS ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
NCAPD3   10000 perm   3 sec   (3791 perm/sec)   p_kst 2.170000e-01   p_cons 9.700000e-03   p_joint 3.730000e-02

Joint ci ratio: 1.252327e-01	ci left: 4.376838e-02	ci right 4.966431e-02	k: 933	n:20000
Cons ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
KS ci ratio: 5.159835e-02	ci left: 2.181382e-01	ci right 2.297421e-01	k: 4478	n:20000
NCAPD3   20000 perm   6 sec   (3457 perm/sec)   p_kst 2.239000e-01   p_cons 9.950000e-03   p_joint 4.665000e-02

Joint ci ratio: 1.421147e-01	ci left: 2.297315e-02	ci right 2.651970e-02	k: 741	n:30000
Cons ci ratio: 2.169337e-01	ci left: 9.598201e-03	ci right 1.196464e-02	k: 322	n:30000
KS ci ratio: 4.229432e-02	ci left: 2.178700e-01	ci right 2.273171e-01	k: 6677	n:30000
NCAPD3   30000 perm   9 sec   (3338 perm/sec)   p_kst 2.225667e-01   p_cons 1.073333e-02   p_joint 2.470000e-02

Joint ci ratio: 1.247889e-01	ci left: 2.257075e-02	ci right 2.559888e-02	k: 962	n:40000
Cons ci ratio: 1.937954e-01	ci left: 9.143308e-03	ci right 1.112878e-02	k: 404	n:40000
KS ci ratio: 3.656464e-02	ci left: 2.191023e-01	ci right 2.272879e-01	k: 8927	n:40000
NCAPD3   40000 perm   12 sec   (3287 perm/sec)   p_kst 2.231750e-01   p_cons 1.010000e-02   p_joint 2.405000e-02

Joint ci ratio: 1.165594e-01	ci left: 2.082924e-02	ci right 2.342666e-02	k: 1105	n:50000
Cons ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
KS ci ratio: 3.240184e-02	ci left: 2.227576e-01	ci right 2.301142e-01	k: 11321	n:50000
NCAPD3   50000 perm   15 sec   (3233 perm/sec)   p_kst 2.264200e-01   p_cons 1.006000e-02   p_joint 2.210000e-02

Joint ci ratio: 1.239992e-01	ci left: 1.536654e-02	ci right 1.741396e-02	k: 982	n:60000
Cons ci ratio: 1.596335e-01	ci left: 9.155264e-03	ci right 1.075934e-02	k: 596	n:60000
KS ci ratio: 2.957506e-02	ci left: 2.231226e-01	ci right 2.298372e-01	k: 13588	n:60000
NCAPD3   60000 perm   19 sec   (3183 perm/sec)   p_kst 2.264667e-01   p_cons 9.933333e-03   p_joint 1.636667e-02

Joint ci ratio: 8.481169e-02	ci left: 2.835687e-02	ci right 3.088232e-02	k: 2072	n:70000
Cons ci ratio: 1.479530e-01	ci left: 9.193563e-03	ci right 1.067606e-02	k: 694	n:70000
KS ci ratio: 2.827126e-02	ci left: 2.124161e-01	ci right 2.185218e-01	k: 15082	n:70000
NCAPD3   70000 perm   22 sec   (3135 perm/sec)   p_kst 2.154571e-01   p_cons 9.914286e-03   p_joint 2.960000e-02

Joint ci ratio: 8.688550e-02	ci left: 2.373336e-02	ci right 2.590128e-02	k: 1984	n:80000
Cons ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
KS ci ratio: 2.642651e-02	ci left: 2.128539e-01	ci right 2.185667e-01	k: 17256	n:80000
NCAPD3   80000 perm   26 sec   (3089 perm/sec)   p_kst 2.157000e-01   p_cons 1.001250e-02   p_joint 2.480000e-02

Joint ci ratio: 8.621223e-02	ci left: 2.148658e-02	ci right 2.343326e-02	k: 2020	n:90000
Cons ci ratio: 1.317218e-01	ci left: 9.102211e-03	ci right 1.039635e-02	k: 876	n:90000
KS ci ratio: 2.486383e-02	ci left: 2.137133e-01	ci right 2.191050e-01	k: 19476	n:90000
NCAPD3   90000 perm   30 sec   (3044 perm/sec)   p_kst 2.164000e-01   p_cons 9.733333e-03   p_joint 2.244444e-02

Joint ci ratio: 7.338748e-02	ci left: 2.672102e-02	ci right 2.876649e-02	k: 2773	n:100000
Cons ci ratio: 1.244759e-01	ci left: 9.208390e-03	ci right 1.044029e-02	k: 981	n:100000
KS ci ratio: 2.361375e-02	ci left: 2.134826e-01	ci right 2.185939e-01	k: 21603	n:100000
NCAPD3   100000 perm   33 sec   (2997 perm/sec)   p_kst 2.160300e-01   p_cons 9.810000e-03   p_joint 2.773000e-02

Joint ci ratio: 7.107470e-02	ci left: 2.595184e-02	ci right 2.787322e-02	k: 2959	n:110000
Cons ci ratio: 1.198769e-01	ci left: 9.049828e-03	ci right 1.021261e-02	k: 1058	n:110000
KS ci ratio: 2.251205e-02	ci left: 2.136435e-01	ci right 2.185169e-01	k: 23768	n:110000
NCAPD3   110000 perm   37 sec   (2960 perm/sec)   p_kst 2.160727e-01   p_cons 9.618182e-03   p_joint 2.690000e-02

Joint ci ratio: 6.873097e-02	ci left: 2.548382e-02	ci right 2.730584e-02	k: 3166	n:120000
Cons ci ratio: 1.141403e-01	ci left: 9.177467e-03	ci right 1.029642e-02	k: 1167	n:120000
KS ci ratio: 2.159393e-02	ci left: 2.131183e-01	ci right 2.177788e-01	k: 25853	n:120000
NCAPD3   120000 perm   41 sec   (2921 perm/sec)   p_kst 2.154417e-01   p_cons 9.725000e-03   p_joint 2.638333e-02

Joint ci ratio: 7.064185e-02	ci left: 2.232045e-02	ci right 2.396246e-02	k: 3007	n:130000
Cons ci ratio: 1.060141e-01	ci left: 9.855624e-03	ci right 1.096638e-02	k: 1352	n:130000
KS ci ratio: 2.070932e-02	ci left: 2.138192e-01	ci right 2.183012e-01	k: 28087	n:130000
NCAPD3   130000 perm   45 sec   (2886 perm/sec)   p_kst 2.160538e-01   p_cons 1.040000e-02   p_joint 2.313077e-02

Joint ci ratio: 7.332287e-02	ci left: 1.927303e-02	ci right 2.074694e-02	k: 2800	n:140000
Cons ci ratio: 1.021251e-01	ci left: 9.882139e-03	ci right 1.095257e-02	k: 1457	n:140000
KS ci ratio: 1.996848e-02	ci left: 2.136902e-01	ci right 2.180073e-01	k: 30218	n:140000
NCAPD3   140000 perm   49 sec   (2850 perm/sec)   p_kst 2.158429e-01   p_cons 1.040714e-02   p_joint 2.000000e-02

Joint ci ratio: 6.401794e-02	ci left: 2.360539e-02	ci right 2.517306e-02	k: 3657	n:150000
Cons ci ratio: 9.831757e-02	ci left: 9.970804e-03	ci right 1.100825e-02	k: 1572	n:150000
KS ci ratio: 1.928815e-02	ci left: 2.138200e-01	ci right 2.179910e-01	k: 32385	n:150000
NCAPD3   150000 perm   53 sec   (2815 perm/sec)   p_kst 2.159000e-01   p_cons 1.048000e-02   p_joint 2.438000e-02

Outputting figure to mutsig2_images.part000000000112/NCAPD3.11_4637_150000_0.2159_0.01048_0.02438.png
                gene_name: NCAPD3
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0100 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 21 percent done.
NCAPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.413391e-02	ci left: 8.785849e-01	ci right 8.911899e-01	k: 8850	n:10000
KS ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
NCAPH   10000 perm   2 sec   (4502 perm/sec)   p_kst 8.464000e-01   p_cons 8.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCAPH.10_2298_10000_0.8464_0.885_1.png
                gene_name: NCAPH
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
NCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
Cons ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
KS ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
NCOR1   10000 perm   3 sec   (3029 perm/sec)   p_kst 5.342000e-01   p_cons 6.401000e-01   p_joint 7.959000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR1.10_7503_10000_0.5342_0.6401_0.7959.png
                gene_name: NCOR1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 24 percent done.
NBPF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 8.914833e-03	ci left: 9.464818e-01	ci right 9.550532e-01	k: 9509	n:10000
KS ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
NBPF7   10000 perm   2 sec   (5252 perm/sec)   p_kst 5.600000e-03   p_cons 9.509000e-01   p_joint 3.010000e-02

Joint ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
Cons ci ratio: 6.364958e-03	ci left: 9.468370e-01	ci right 9.529313e-01	k: 18999	n:20000
KS ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
NBPF7   20000 perm   4 sec   (4710 perm/sec)   p_kst 6.400000e-03   p_cons 9.499500e-01   p_joint 3.100000e-02

Joint ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
Cons ci ratio: 5.392666e-03	ci left: 9.436889e-01	ci right 9.488242e-01	k: 28389	n:30000
KS ci ratio: 2.728432e-01	ci left: 5.901397e-03	ci right 7.796003e-03	k: 204	n:30000
NBPF7   30000 perm   7 sec   (4499 perm/sec)   p_kst 6.800000e-03   p_cons 9.463000e-01   p_joint 1.866667e-02

Joint ci ratio: 1.247226e-01	ci left: 2.259499e-02	ci right 2.562464e-02	k: 963	n:40000
Cons ci ratio: 4.696253e-03	ci left: 9.434597e-01	ci right 9.479253e-01	k: 37829	n:40000
KS ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
NBPF7   40000 perm   9 sec   (4330 perm/sec)   p_kst 6.650000e-03   p_cons 9.457250e-01   p_joint 2.407500e-02

Joint ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
Cons ci ratio: 4.193963e-03	ci left: 9.438608e-01	ci right 9.478472e-01	k: 47294	n:50000
KS ci ratio: 2.167325e-01	ci left: 5.795477e-03	ci right 7.222727e-03	k: 324	n:50000
NBPF7   50000 perm   12 sec   (4219 perm/sec)   p_kst 6.480000e-03   p_cons 9.458800e-01   p_joint 2.148000e-02

Joint ci ratio: 1.015843e-01	ci left: 2.298513e-02	ci right 2.546118e-02	k: 1452	n:60000
Cons ci ratio: 3.835801e-03	ci left: 9.438399e-01	ci right 9.474836e-01	k: 56741	n:60000
KS ci ratio: 2.009853e-01	ci left: 5.666711e-03	ci right 6.948414e-03	k: 377	n:60000
NBPF7   60000 perm   15 sec   (4129 perm/sec)   p_kst 6.283333e-03   p_cons 9.456833e-01   p_joint 2.420000e-02

Joint ci ratio: 9.091427e-02	ci left: 2.469397e-02	ci right 2.705984e-02	k: 1810	n:70000
Cons ci ratio: 3.566890e-03	ci left: 9.435173e-01	ci right 9.469028e-01	k: 66166	n:70000
KS ci ratio: 1.860764e-01	ci left: 5.713638e-03	ci right 6.899273e-03	k: 440	n:70000
NBPF7   70000 perm   17 sec   (4047 perm/sec)   p_kst 6.285714e-03   p_cons 9.452286e-01   p_joint 2.585714e-02

Joint ci ratio: 8.779687e-02	ci left: 2.324403e-02	ci right 2.539066e-02	k: 1944	n:80000
Cons ci ratio: 3.349861e-03	ci left: 9.432077e-01	ci right 9.463849e-01	k: 75585	n:80000
KS ci ratio: 1.731962e-01	ci left: 5.811277e-03	ci right 6.924976e-03	k: 508	n:80000
NBPF7   80000 perm   20 sec   (3954 perm/sec)   p_kst 6.350000e-03   p_cons 9.448125e-01   p_joint 2.430000e-02

Joint ci ratio: 8.700828e-02	ci left: 2.109506e-02	ci right 2.302481e-02	k: 1984	n:90000
Cons ci ratio: 3.157281e-03	ci left: 9.433331e-01	ci right 9.463271e-01	k: 85036	n:90000
KS ci ratio: 1.651332e-01	ci left: 5.708238e-03	ci right 6.746197e-03	k: 559	n:90000
NBPF7   90000 perm   23 sec   (3882 perm/sec)   p_kst 6.211111e-03   p_cons 9.448444e-01   p_joint 2.204444e-02

Joint ci ratio: 8.461748e-02	ci left: 2.012023e-02	ci right 2.190771e-02	k: 2100	n:100000
Cons ci ratio: 2.991339e-03	ci left: 9.435488e-01	ci right 9.463853e-01	k: 94498	n:100000
KS ci ratio: 1.575821e-01	ci left: 5.665202e-03	ci right 6.643775e-03	k: 614	n:100000
NBPF7   100000 perm   26 sec   (3818 perm/sec)   p_kst 6.140000e-03   p_cons 9.449800e-01   p_joint 2.100000e-02

Joint ci ratio: 8.421099e-02	ci left: 1.850403e-02	ci right 2.013963e-02	k: 2124	n:110000
Cons ci ratio: 2.852561e-03	ci left: 9.435996e-01	ci right 9.463041e-01	k: 103946	n:110000
KS ci ratio: 1.515502e-01	ci left: 5.587135e-03	ci right 6.511927e-03	k: 664	n:110000
NBPF7   110000 perm   29 sec   (3756 perm/sec)   p_kst 6.036364e-03   p_cons 9.449636e-01   p_joint 1.930909e-02

Joint ci ratio: 8.938326e-02	ci left: 1.506940e-02	ci right 1.648747e-02	k: 1892	n:120000
Cons ci ratio: 2.730806e-03	ci left: 9.436699e-01	ci right 9.462586e-01	k: 113397	n:120000
KS ci ratio: 1.456502e-01	ci left: 5.562830e-03	ci right 6.444633e-03	k: 719	n:120000
NBPF7   120000 perm   33 sec   (3692 perm/sec)   p_kst 5.991667e-03   p_cons 9.449750e-01   p_joint 1.576667e-02

Joint ci ratio: 9.028917e-02	ci left: 1.364658e-02	ci right 1.494445e-02	k: 1857	n:130000
Cons ci ratio: 2.629236e-03	ci left: 9.434981e-01	ci right 9.459897e-01	k: 122818	n:130000
KS ci ratio: 1.399363e-01	ci left: 5.579976e-03	ci right 6.426902e-03	k: 779	n:130000
NBPF7   130000 perm   36 sec   (3624 perm/sec)   p_kst 5.992308e-03   p_cons 9.447538e-01   p_joint 1.428462e-02

Joint ci ratio: 8.805828e-02	ci left: 1.334215e-02	ci right 1.457810e-02	k: 1953	n:140000
Cons ci ratio: 2.531251e-03	ci left: 9.436414e-01	ci right 9.460401e-01	k: 132279	n:140000
KS ci ratio: 1.345242e-01	ci left: 5.622866e-03	ci right 6.440653e-03	k: 843	n:140000
NBPF7   140000 perm   39 sec   (3567 perm/sec)   p_kst 6.021429e-03   p_cons 9.448500e-01   p_joint 1.395000e-02

Joint ci ratio: 7.976300e-02	ci left: 1.521419e-02	ci right 1.648462e-02	k: 2376	n:150000
Cons ci ratio: 2.442831e-03	ci left: 9.437939e-01	ci right 9.461088e-01	k: 141744	n:150000
KS ci ratio: 1.299834e-01	ci left: 5.634778e-03	ci right 6.424500e-03	k: 903	n:150000
NBPF7   150000 perm   43 sec   (3514 perm/sec)   p_kst 6.020000e-03   p_cons 9.449600e-01   p_joint 1.584000e-02

Joint ci ratio: 8.547422e-02	ci left: 1.242009e-02	ci right 1.353516e-02	k: 2075	n:160000
Cons ci ratio: 2.207263e-03	ci left: 9.506634e-01	ci right 9.527702e-01	k: 152276	n:160000
KS ci ratio: 1.247074e-01	ci left: 5.754600e-03	ci right 6.525960e-03	k: 981	n:160000
NBPF7   160000 perm   46 sec   (3462 perm/sec)   p_kst 6.131250e-03   p_cons 9.517250e-01   p_joint 1.296875e-02

Joint ci ratio: 7.666231e-02	ci left: 1.456603e-02	ci right 1.573294e-02	k: 2574	n:170000
Cons ci ratio: 2.295821e-03	ci left: 9.438107e-01	ci right 9.459858e-01	k: 160634	n:170000
KS ci ratio: 1.211227e-01	ci left: 5.752482e-03	ci right 6.499805e-03	k: 1040	n:170000
NBPF7   170000 perm   50 sec   (3411 perm/sec)   p_kst 6.117647e-03   p_cons 9.449059e-01   p_joint 1.514118e-02

Joint ci ratio: 7.850887e-02	ci left: 1.312448e-02	ci right 1.420238e-02	k: 2458	n:180000
Cons ci ratio: 2.232210e-03	ci left: 9.437911e-01	ci right 9.459057e-01	k: 170074	n:180000
KS ci ratio: 1.179924e-01	ci left: 5.734704e-03	ci right 6.459120e-03	k: 1096	n:180000
NBPF7   180000 perm   54 sec   (3362 perm/sec)   p_kst 6.088889e-03   p_cons 9.448556e-01   p_joint 1.365556e-02

Joint ci ratio: 7.649881e-02	ci left: 1.310982e-02	ci right 1.415773e-02	k: 2589	n:190000
Cons ci ratio: 2.171523e-03	ci left: 9.438752e-01	ci right 9.459323e-01	k: 179533	n:190000
KS ci ratio: 1.147928e-01	ci left: 5.749696e-03	ci right 6.454975e-03	k: 1158	n:190000
NBPF7   190000 perm   57 sec   (3314 perm/sec)   p_kst 6.094737e-03   p_cons 9.449105e-01   p_joint 1.362632e-02

Joint ci ratio: 7.125955e-02	ci left: 1.437357e-02	ci right 1.544055e-02	k: 2980	n:200000
Cons ci ratio: 2.115529e-03	ci left: 9.439515e-01	ci right 9.459555e-01	k: 188992	n:200000
KS ci ratio: 1.115189e-01	ci left: 5.797455e-03	ci right 6.486977e-03	k: 1227	n:200000
NBPF7   200000 perm   61 sec   (3268 perm/sec)   p_kst 6.135000e-03   p_cons 9.449600e-01   p_joint 1.490000e-02

Joint ci ratio: 7.278593e-02	ci left: 1.312767e-02	ci right 1.412392e-02	k: 2860	n:210000
Cons ci ratio: 2.066109e-03	ci left: 9.438964e-01	ci right 9.458533e-01	k: 198425	n:210000
KS ci ratio: 1.087211e-01	ci left: 5.817757e-03	ci right 6.491222e-03	k: 1291	n:210000
NBPF7   210000 perm   65 sec   (3220 perm/sec)   p_kst 6.147619e-03   p_cons 9.448810e-01   p_joint 1.361905e-02

Joint ci ratio: 7.113940e-02	ci left: 1.312909e-02	ci right 1.410197e-02	k: 2994	n:220000
Cons ci ratio: 2.018586e-03	ci left: 9.439201e-01	ci right 9.458318e-01	k: 207874	n:220000
KS ci ratio: 1.062421e-01	ci left: 5.823133e-03	ci right 6.480890e-03	k: 1352	n:220000
NBPF7   220000 perm   69 sec   (3174 perm/sec)   p_kst 6.145455e-03   p_cons 9.448818e-01   p_joint 1.360909e-02

Joint ci ratio: 6.626520e-02	ci left: 1.449008e-02	ci right 1.548742e-02	k: 3446	n:230000
Cons ci ratio: 1.974034e-03	ci left: 9.439509e-01	ci right 9.458204e-01	k: 217325	n:230000
KS ci ratio: 1.038884e-01	ci left: 5.832436e-03	ci right 6.475757e-03	k: 1414	n:230000
NBPF7   230000 perm   73 sec   (3132 perm/sec)   p_kst 6.147826e-03   p_cons 9.448913e-01   p_joint 1.498261e-02

Joint ci ratio: 6.592813e-02	ci left: 1.403783e-02	ci right 1.499894e-02	k: 3483	n:240000
Cons ci ratio: 1.933698e-03	ci left: 9.439041e-01	ci right 9.457352e-01	k: 226758	n:240000
KS ci ratio: 1.019626e-01	ci left: 5.808622e-03	ci right 6.436728e-03	k: 1468	n:240000
NBPF7   240000 perm   78 sec   (3092 perm/sec)   p_kst 6.116667e-03   p_cons 9.448250e-01   p_joint 1.451250e-02

Joint ci ratio: 6.778644e-02	ci left: 1.275233e-02	ci right 1.365100e-02	k: 3299	n:250000
Cons ci ratio: 1.895445e-03	ci left: 9.438775e-01	ci right 9.456722e-01	k: 236195	n:250000
KS ci ratio: 9.994229e-02	ci left: 5.810218e-03	ci right 6.425317e-03	k: 1528	n:250000
NBPF7   250000 perm   82 sec   (3049 perm/sec)   p_kst 6.112000e-03   p_cons 9.447800e-01   p_joint 1.319600e-02

Outputting figure to mutsig2_images.part000000000112/NBPF7.9_1297_250000_0.006112_0.94478_0.013196.png
                gene_name: NBPF7
               theta_stop: 0.100 
                    nperm: 250000 
                     p_ks: 0.0061 
        ci_ks_bounds_left: 0.0058 
       ci_ks_bounds_right: 0.0064 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 26 percent done.
NAP1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
Cons ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
KS ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
NAP1L3   10000 perm   2 sec   (4953 perm/sec)   p_kst 5.974000e-01   p_cons 5.884000e-01   p_joint 7.382000e-01

Outputting figure to mutsig2_images.part000000000112/NAP1L3.8_1525_10000_0.5974_0.5884_0.7382.png
                gene_name: NAP1L3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 27 percent done.
NCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
Cons ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
NCAM1   10000 perm   2 sec   (4576 perm/sec)   p_kst 1.550000e-02   p_cons 4.104000e-01   p_joint 3.680000e-02

Joint ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
Cons ci ratio: 3.342032e-02	ci left: 4.006790e-01	ci right 4.143479e-01	k: 8150	n:20000
KS ci ratio: 2.120444e-01	ci left: 1.501694e-02	ci right 1.862551e-02	k: 335	n:20000
NCAM1   20000 perm   5 sec   (4154 perm/sec)   p_kst 1.675000e-02   p_cons 4.075000e-01   p_joint 3.655000e-02

Joint ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
Cons ci ratio: 2.710469e-02	ci left: 4.051918e-01	ci right 4.163588e-01	k: 12323	n:30000
KS ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
NCAM1   30000 perm   8 sec   (3993 perm/sec)   p_kst 1.603333e-02   p_cons 4.107667e-01   p_joint 3.646667e-02

Joint ci ratio: 1.192575e-01	ci left: 2.472946e-02	ci right 2.788981e-02	k: 1051	n:40000
Cons ci ratio: 2.336335e-02	ci left: 4.082187e-01	ci right 4.178939e-01	k: 16522	n:40000
KS ci ratio: 1.526182e-01	ci left: 1.498555e-02	ci right 1.748540e-02	k: 648	n:40000
NCAM1   40000 perm   10 sec   (3880 perm/sec)   p_kst 1.620000e-02   p_cons 4.130500e-01   p_joint 2.627500e-02

Joint ci ratio: 7.988946e-02	ci left: 4.410174e-02	ci right 4.779120e-02	k: 2296	n:50000
Cons ci ratio: 2.090865e-02	ci left: 4.084597e-01	ci right 4.171104e-01	k: 20639	n:50000
KS ci ratio: 1.373041e-01	ci left: 1.493767e-02	ci right 1.715903e-02	k: 801	n:50000
NCAM1   50000 perm   13 sec   (3778 perm/sec)   p_kst 1.602000e-02   p_cons 4.127800e-01   p_joint 4.592000e-02

Joint ci ratio: 7.581986e-02	ci left: 4.103062e-02	ci right 4.428048e-02	k: 2558	n:60000
Cons ci ratio: 1.904495e-02	ci left: 4.099050e-01	ci right 4.178033e-01	k: 24831	n:60000
KS ci ratio: 1.267813e-01	ci left: 1.468817e-02	ci right 1.669241e-02	k: 940	n:60000
NCAM1   60000 perm   16 sec   (3690 perm/sec)   p_kst 1.566667e-02   p_cons 4.138500e-01   p_joint 4.263333e-02

Joint ci ratio: 6.722165e-02	ci left: 4.476908e-02	ci right 4.789724e-02	k: 3242	n:70000
Cons ci ratio: 1.760660e-02	ci left: 4.109041e-01	ci right 4.182173e-01	k: 29019	n:70000
KS ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
NCAM1   70000 perm   19 sec   (3619 perm/sec)   p_kst 1.585714e-02   p_cons 4.145571e-01   p_joint 4.631429e-02

Joint ci ratio: 6.466858e-02	ci left: 4.249064e-02	ci right 4.534255e-02	k: 3512	n:80000
Cons ci ratio: 1.650545e-02	ci left: 4.100844e-01	ci right 4.169219e-01	k: 33080	n:80000
KS ci ratio: 1.097368e-01	ci left: 1.483776e-02	ci right 1.657262e-02	k: 1255	n:80000
NCAM1   80000 perm   23 sec   (3550 perm/sec)   p_kst 1.568750e-02   p_cons 4.135000e-01   p_joint 4.390000e-02

Joint ci ratio: 6.581438e-02	ci left: 3.667275e-02	ci right 3.917937e-02	k: 3412	n:90000
Cons ci ratio: 1.552771e-02	ci left: 4.113342e-01	ci right 4.177824e-01	k: 37310	n:90000
KS ci ratio: 1.033125e-01	ci left: 1.493041e-02	ci right 1.656769e-02	k: 1416	n:90000
NCAM1   90000 perm   26 sec   (3496 perm/sec)   p_kst 1.573333e-02   p_cons 4.145556e-01   p_joint 3.791111e-02

Joint ci ratio: 6.656232e-02	ci left: 3.240314e-02	ci right 3.464403e-02	k: 3351	n:100000
Cons ci ratio: 1.471955e-02	ci left: 4.118737e-01	ci right 4.179912e-01	k: 41493	n:100000
KS ci ratio: 9.774140e-02	ci left: 1.505569e-02	ci right 1.661257e-02	k: 1582	n:100000
NCAM1   100000 perm   29 sec   (3441 perm/sec)   p_kst 1.582000e-02   p_cons 4.149300e-01   p_joint 3.351000e-02

Outputting figure to mutsig2_images.part000000000112/NCAM1.8_2855_100000_0.01582_0.41493_0.03351.png
                gene_name: NCAM1
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 29 percent done.
NCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
Cons ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
KS ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
NCAN   10000 perm   2 sec   (4376 perm/sec)   p_kst 9.090000e-02   p_cons 8.203000e-01   p_joint 2.409000e-01

Joint ci ratio: 5.553194e-02	ci left: 1.938816e-01	ci right 2.050059e-01	k: 3988	n:20000
Cons ci ratio: 1.316279e-02	ci left: 8.105590e-01	ci right 8.213489e-01	k: 16320	n:20000
KS ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
NCAN   20000 perm   5 sec   (4000 perm/sec)   p_kst 9.020000e-02   p_cons 8.160000e-01   p_joint 1.994000e-01

Outputting figure to mutsig2_images.part000000000112/NCAN.8_4022_20000_0.0902_0.816_0.1994.png
                gene_name: NCAN
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 30 percent done.
NCOA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
Cons ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
KS ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
NCOA3   10000 perm   2 sec   (4236 perm/sec)   p_kst 2.147000e-01   p_cons 3.782000e-01   p_joint 2.772000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA3.8_4389_10000_0.2147_0.3782_0.2772.png
                gene_name: NCOA3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 32 percent done.
NDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
KS ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
NDN   10000 perm   2 sec   (6355 perm/sec)   p_kst 3.055000e-01   p_cons 2.410000e-02   p_joint 7.200000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
KS ci ratio: 4.176316e-02	ci left: 2.993684e-01	ci right 3.121881e-01	k: 6115	n:20000
NDN   20000 perm   4 sec   (5473 perm/sec)   p_kst 3.057500e-01   p_cons 2.015000e-02   p_joint 5.435000e-02

Joint ci ratio: 8.230250e-02	ci left: 6.739943e-02	ci right 7.321745e-02	k: 2108	n:30000
Cons ci ratio: 1.570918e-01	ci left: 1.873410e-02	ci right 2.195973e-02	k: 609	n:30000
KS ci ratio: 3.442620e-02	ci left: 2.965420e-01	ci right 3.069631e-01	k: 9052	n:30000
NDN   30000 perm   6 sec   (5181 perm/sec)   p_kst 3.017333e-01   p_cons 2.030000e-02   p_joint 7.026667e-02

Joint ci ratio: 7.886208e-02	ci left: 5.587622e-02	ci right 6.048818e-02	k: 2326	n:40000
Cons ci ratio: 1.353960e-01	ci left: 1.913373e-02	ci right 2.193649e-02	k: 820	n:40000
KS ci ratio: 2.979218e-02	ci left: 2.975524e-01	ci right 3.065763e-01	k: 12082	n:40000
NDN   40000 perm   8 sec   (4994 perm/sec)   p_kst 3.020500e-01   p_cons 2.050000e-02   p_joint 5.815000e-02

Joint ci ratio: 6.625983e-02	ci left: 6.324825e-02	ci right 6.760237e-02	k: 3270	n:50000
Cons ci ratio: 1.145114e-01	ci left: 2.158717e-02	ci right 2.422862e-02	k: 1144	n:50000
KS ci ratio: 2.670615e-02	ci left: 2.971006e-01	ci right 3.051625e-01	k: 15056	n:50000
NDN   50000 perm   10 sec   (4854 perm/sec)   p_kst 3.011200e-01   p_cons 2.288000e-02   p_joint 6.540000e-02

Joint ci ratio: 6.582974e-02	ci left: 5.396015e-02	ci right 5.764963e-02	k: 3347	n:60000
Cons ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
KS ci ratio: 2.440382e-02	ci left: 2.970322e-01	ci right 3.043871e-01	k: 18042	n:60000
NDN   60000 perm   13 sec   (4732 perm/sec)   p_kst 3.007000e-01   p_cons 2.313333e-02   p_joint 5.578333e-02

Joint ci ratio: 6.183168e-02	ci left: 5.261857e-02	ci right 5.598992e-02	k: 3800	n:70000
Cons ci ratio: 9.583588e-02	ci left: 2.222303e-02	ci right 2.447387e-02	k: 1633	n:70000
KS ci ratio: 2.251564e-02	ci left: 2.987566e-01	ci right 3.055741e-01	k: 21151	n:70000
NDN   70000 perm   15 sec   (4622 perm/sec)   p_kst 3.021571e-01   p_cons 2.332857e-02   p_joint 5.428571e-02

Outputting figure to mutsig2_images.part000000000112/NDN.7_970_70000_0.30216_0.023329_0.054286.png
                gene_name: NDN
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 33 percent done.
NCAPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.363186e-02	ci left: 2.662650e-01	ci right 2.838662e-01	k: 2750	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
NCAPD2   10000 perm   2 sec   (4380 perm/sec)   p_kst 3.044000e-01   p_cons 3.420000e-01   p_joint 2.750000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPD2.6_4330_10000_0.3044_0.342_0.275.png
                gene_name: NCAPD2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
NCOA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
NCOA2   10000 perm   3 sec   (3778 perm/sec)   p_kst 4.197000e-01   p_cons 4.040000e-02   p_joint 1.161000e-01

Joint ci ratio: 6.869877e-02	ci left: 1.351694e-01	ci right 1.448355e-01	k: 2799	n:20000
Cons ci ratio: 1.322969e-01	ci left: 3.926179e-02	ci right 4.487233e-02	k: 840	n:20000
KS ci ratio: 3.391314e-02	ci left: 3.936491e-01	ci right 4.072799e-01	k: 8009	n:20000
NCOA2   20000 perm   6 sec   (3604 perm/sec)   p_kst 4.004500e-01   p_cons 4.200000e-02   p_joint 1.399500e-01

Joint ci ratio: 6.859633e-02	ci left: 9.478929e-02	ci right 1.015554e-01	k: 2944	n:30000
Cons ci ratio: 1.087654e-01	ci left: 3.923849e-02	ci right 4.378417e-02	k: 1244	n:30000
KS ci ratio: 2.808396e-02	ci left: 3.881653e-01	ci right 3.992553e-01	k: 11811	n:30000
NCOA2   30000 perm   9 sec   (3522 perm/sec)   p_kst 3.937000e-01   p_cons 4.146667e-02   p_joint 9.813333e-02

Joint ci ratio: 5.876679e-02	ci left: 9.715068e-02	ci right 1.030575e-01	k: 4003	n:40000
Cons ci ratio: 9.425323e-02	ci left: 3.949303e-02	ci right 4.342389e-02	k: 1657	n:40000
KS ci ratio: 2.438562e-02	ci left: 3.876602e-01	ci right 3.972554e-01	k: 15698	n:40000
NCOA2   40000 perm   12 sec   (3367 perm/sec)   p_kst 3.924500e-01   p_cons 4.142500e-02   p_joint 1.000750e-01

Outputting figure to mutsig2_images.part000000000112/NCOA2.6_4479_40000_0.39245_0.041425_0.10007.png
                gene_name: NCOA2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 36 percent done.
NAT8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
Cons ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
KS ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
NAT8B   10000 perm   2 sec   (5771 perm/sec)   p_kst 7.590000e-02   p_cons 5.718000e-01   p_joint 1.800000e-01

Joint ci ratio: 6.827406e-02	ci left: 1.366477e-01	ci right 1.463568e-01	k: 2829	n:20000
Cons ci ratio: 2.321056e-02	ci left: 5.809408e-01	ci right 5.946337e-01	k: 11756	n:20000
KS ci ratio: 9.762416e-02	ci left: 7.094677e-02	ci right 7.827748e-02	k: 1491	n:20000
NAT8B   20000 perm   4 sec   (5128 perm/sec)   p_kst 7.455000e-02   p_cons 5.878000e-01   p_joint 1.414500e-01

Outputting figure to mutsig2_images.part000000000112/NAT8B.5_688_20000_0.07455_0.5878_0.14145.png
                gene_name: NAT8B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 38 percent done.
NBEAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
Cons ci ratio: 1.548209e-02	ci left: 8.582481e-01	ci right 8.717385e-01	k: 8651	n:10000
KS ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
NBEAL2   10000 perm   3 sec   (3186 perm/sec)   p_kst 3.871000e-01   p_cons 8.651000e-01   p_joint 5.799000e-01

Outputting figure to mutsig2_images.part000000000112/NBEAL2.5_8481_10000_0.3871_0.8651_0.5799.png
                gene_name: NBEAL2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 39 percent done.
NBPF9
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
NBPF9   10000 perm   2 sec   (4598 perm/sec)   p_kst 3.927000e-01   p_cons 3.427000e-01   p_joint 4.542000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF9.4_2907_10000_0.3927_0.3427_0.4542.png
                gene_name: NBPF9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 41 percent done.
NCAPG2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
Cons ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
KS ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
NCAPG2   10000 perm   2 sec   (4400 perm/sec)   p_kst 6.102000e-01   p_cons 2.716000e-01   p_joint 5.389000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPG2.4_3540_10000_0.6102_0.2716_0.5389.png
                gene_name: NCAPG2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 42 percent done.
NCAPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
NCAPH2   10000 perm   2 sec   (4687 perm/sec)   p_kst 7.942000e-01   p_cons 7.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCAPH2.5_1940_10000_0.7942_0.7666_1.png
                gene_name: NCAPH2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
NCOA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
KS ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
NCOA1   10000 perm   3 sec   (3389 perm/sec)   p_kst 2.125000e-01   p_cons 9.096000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA1.5_4451_10000_0.2125_0.9096_0.3353.png
                gene_name: NCOA1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 45 percent done.
NAPEPLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
Cons ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
KS ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
NAPEPLD   10000 perm   2 sec   (5876 perm/sec)   p_kst 2.891000e-01   p_cons 4.071000e-01   p_joint 4.380000e-01

Outputting figure to mutsig2_images.part000000000112/NAPEPLD.4_1198_10000_0.2891_0.4071_0.438.png
                gene_name: NAPEPLD
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
NARF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
KS ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
NARF   10000 perm   2 sec   (5436 perm/sec)   p_kst 8.181000e-01   p_cons 7.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARF.4_1557_10000_0.8181_0.7181_1.png
                gene_name: NARF
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
NARG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
Cons ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
NARG2   10000 perm   2 sec   (5228 perm/sec)   p_kst 3.162000e-01   p_cons 2.784000e-01   p_joint 3.200000e-01

Outputting figure to mutsig2_images.part000000000112/NARG2.4_3009_10000_0.3162_0.2784_0.32.png
                gene_name: NARG2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 50 percent done.
NBEAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
NBEAL1   10000 perm   3 sec   (3216 perm/sec)   p_kst 6.110000e-02   p_cons 8.260000e-02   p_joint 7.440000e-02

Joint ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
Cons ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
NBEAL1   20000 perm   7 sec   (2946 perm/sec)   p_kst 6.120000e-02   p_cons 7.675000e-02   p_joint 3.210000e-02

Joint ci ratio: 1.247435e-01	ci left: 2.987554e-02	ci right 3.388246e-02	k: 955	n:30000
Cons ci ratio: 7.720370e-02	ci left: 7.607011e-02	ci right 8.221169e-02	k: 2373	n:30000
KS ci ratio: 8.823125e-02	ci left: 5.900317e-02	ci right 6.448208e-02	k: 1851	n:30000
NBEAL1   30000 perm   11 sec   (2852 perm/sec)   p_kst 6.170000e-02   p_cons 7.910000e-02   p_joint 3.183333e-02

Joint ci ratio: 1.005930e-01	ci left: 3.473223e-02	ci right 3.843544e-02	k: 1462	n:40000
Cons ci ratio: 6.712965e-02	ci left: 7.590705e-02	ci right 8.120432e-02	k: 3141	n:40000
KS ci ratio: 7.615364e-02	ci left: 5.975429e-02	ci right 6.450952e-02	k: 2484	n:40000
NBEAL1   40000 perm   14 sec   (2791 perm/sec)   p_kst 6.210000e-02   p_cons 7.852500e-02   p_joint 3.655000e-02

Joint ci ratio: 9.367126e-02	ci left: 3.225266e-02	ci right 3.544176e-02	k: 1691	n:50000
Cons ci ratio: 6.014664e-02	ci left: 7.594009e-02	ci right 8.066901e-02	k: 3914	n:50000
KS ci ratio: 6.798868e-02	ci left: 6.021659e-02	ci right 6.447440e-02	k: 3116	n:50000
NBEAL1   50000 perm   18 sec   (2743 perm/sec)   p_kst 6.232000e-02   p_cons 7.828000e-02   p_joint 3.382000e-02

Outputting figure to mutsig2_images.part000000000112/NBEAL1.4_8301_50000_0.06232_0.07828_0.03382.png
                gene_name: NBEAL1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 52 percent done.
NBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
Cons ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
KS ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
NBN   10000 perm   2 sec   (4931 perm/sec)   p_kst 9.390000e-01   p_cons 1.984000e-01   p_joint 7.584000e-01

Outputting figure to mutsig2_images.part000000000112/NBN.4_2329_10000_0.939_0.1984_0.7584.png
                gene_name: NBN
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 53 percent done.
NCAPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
Cons ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KS ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
NCAPG   10000 perm   2 sec   (4786 perm/sec)   p_kst 4.960000e-02   p_cons 7.180000e-01   p_joint 1.328000e-01

Joint ci ratio: 6.636013e-02	ci left: 1.435981e-01	ci right 1.535043e-01	k: 2970	n:20000
Cons ci ratio: 1.738599e-02	ci left: 7.113551e-01	ci right 7.238815e-01	k: 14353	n:20000
KS ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
NCAPG   20000 perm   5 sec   (4322 perm/sec)   p_kst 4.895000e-02   p_cons 7.176500e-01   p_joint 1.485000e-01

Joint ci ratio: 7.095837e-02	ci left: 8.904756e-02	ci right 9.563163e-02	k: 2769	n:30000
Cons ci ratio: 1.402245e-02	ci left: 7.174957e-01	ci right 7.276612e-01	k: 21678	n:30000
KS ci ratio: 9.854601e-02	ci left: 4.762588e-02	ci right 5.259504e-02	k: 1502	n:30000
NCAPG   30000 perm   7 sec   (4021 perm/sec)   p_kst 5.006667e-02   p_cons 7.226000e-01   p_joint 9.230000e-02

Outputting figure to mutsig2_images.part000000000112/NCAPG.4_3132_30000_0.050067_0.7226_0.0923.png
                gene_name: NCAPG
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 55 percent done.
NCKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
Cons ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
NCKAP1   10000 perm   2 sec   (4700 perm/sec)   p_kst 2.621000e-01   p_cons 3.504000e-01   p_joint 2.867000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1.4_3533_10000_0.2621_0.3504_0.2867.png
                gene_name: NCKAP1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 56 percent done.
NCKAP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
Cons ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
KS ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
NCKAP5L   10000 perm   2 sec   (4606 perm/sec)   p_kst 7.562000e-01   p_cons 5.271000e-01   p_joint 8.241000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP5L.4_4049_10000_0.7562_0.5271_0.8241.png
                gene_name: NCKAP5L
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 58 percent done.
NCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
NCL   10000 perm   2 sec   (5231 perm/sec)   p_kst 5.824000e-01   p_cons 5.290000e-02   p_joint 1.955000e-01

Joint ci ratio: 6.557146e-02	ci left: 1.466063e-01	ci right 1.565952e-01	k: 3031	n:20000
Cons ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
KS ci ratio: 2.334251e-02	ci left: 5.781845e-01	ci right 5.918908e-01	k: 11701	n:20000
NCL   20000 perm   4 sec   (4678 perm/sec)   p_kst 5.850500e-01   p_cons 5.195000e-02   p_joint 1.515500e-01

Joint ci ratio: 5.151799e-02	ci left: 1.575830e-01	ci right 1.659493e-01	k: 4852	n:30000
Cons ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
KS ci ratio: 1.927812e-02	ci left: 5.738899e-01	ci right 5.850947e-01	k: 17385	n:30000
NCL   30000 perm   7 sec   (4446 perm/sec)   p_kst 5.795000e-01   p_cons 5.186667e-02   p_joint 1.617333e-01

Outputting figure to mutsig2_images.part000000000112/NCL.4_2189_30000_0.5795_0.051867_0.16173.png
                gene_name: NCL
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 59 percent done.
NCOA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
Cons ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
KS ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
NCOA4   10000 perm   2 sec   (5330 perm/sec)   p_kst 3.148000e-01   p_cons 5.857000e-01   p_joint 6.341000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA4.4_2003_10000_0.3148_0.5857_0.6341.png
                gene_name: NCOA4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 61 percent done.
NCOA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
Cons ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
NCOA5   10000 perm   2 sec   (5685 perm/sec)   p_kst 1.593000e-01   p_cons 7.192000e-01   p_joint 2.922000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA5.4_1768_10000_0.1593_0.7192_0.2922.png
                gene_name: NCOA5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 62 percent done.
NCOA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
Cons ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
KS ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
NCOA7   10000 perm   2 sec   (4895 perm/sec)   p_kst 9.568000e-01   p_cons 7.670000e-02   p_joint 2.541000e-01

Joint ci ratio: 4.395206e-02	ci left: 2.782538e-01	ci right 2.908089e-01	k: 5690	n:20000
Cons ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
KS ci ratio: 5.828263e-03	ci left: 9.548182e-01	ci right 9.604477e-01	k: 19154	n:20000
NCOA7   20000 perm   5 sec   (4382 perm/sec)   p_kst 9.577000e-01   p_cons 7.865000e-02   p_joint 2.845000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA7.4_2889_20000_0.9577_0.07865_0.2845.png
                gene_name: NCOA7
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 64 percent done.
NCSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
Cons ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
NCSTN   10000 perm   2 sec   (5174 perm/sec)   p_kst 6.706000e-01   p_cons 3.750000e-02   p_joint 2.431000e-01

Joint ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 1.943048e-02	ci left: 6.639364e-01	ci right 6.770140e-01	k: 13410	n:20000
NCSTN   20000 perm   4 sec   (4643 perm/sec)   p_kst 6.705000e-01   p_cons 3.450000e-02   p_joint 1.214500e-01

Joint ci ratio: 6.400533e-02	ci left: 1.075650e-01	ci right 1.147105e-01	k: 3333	n:30000
Cons ci ratio: 1.191894e-01	ci left: 3.272222e-02	ci right 3.690183e-02	k: 1043	n:30000
KS ci ratio: 1.579336e-02	ci left: 6.671563e-01	ci right 6.778103e-01	k: 20175	n:30000
NCSTN   30000 perm   7 sec   (4423 perm/sec)   p_kst 6.725000e-01   p_cons 3.476667e-02   p_joint 1.111000e-01

Joint ci ratio: 4.763235e-02	ci left: 1.413401e-01	ci right 1.482616e-01	k: 5791	n:40000
Cons ci ratio: 1.020500e-01	ci left: 3.375670e-02	ci right 3.741113e-02	k: 1422	n:40000
KS ci ratio: 1.363641e-02	ci left: 6.692057e-01	ci right 6.784190e-01	k: 26953	n:40000
NCSTN   40000 perm   9 sec   (4292 perm/sec)   p_kst 6.738250e-01   p_cons 3.555000e-02   p_joint 1.447750e-01

Joint ci ratio: 3.763136e-02	ci left: 1.749537e-01	ci right 1.816837e-01	k: 8915	n:50000
Cons ci ratio: 9.186040e-02	ci left: 3.352351e-02	ci right 3.677075e-02	k: 1756	n:50000
KS ci ratio: 1.221694e-02	ci left: 6.689684e-01	ci right 6.772115e-01	k: 33655	n:50000
NCSTN   50000 perm   12 sec   (4187 perm/sec)   p_kst 6.731000e-01   p_cons 3.512000e-02   p_joint 1.783000e-01

Outputting figure to mutsig2_images.part000000000112/NCSTN.4_2198_50000_0.6731_0.03512_0.1783.png
                gene_name: NCSTN
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 65 percent done.
NDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
Cons ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
KS ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
NDE1   10000 perm   2 sec   (6304 perm/sec)   p_kst 8.240000e-02   p_cons 8.096000e-01   p_joint 2.674000e-01

Joint ci ratio: 6.251308e-02	ci left: 1.591393e-01	ci right 1.694585e-01	k: 3285	n:20000
Cons ci ratio: 1.373169e-02	ci left: 7.973684e-01	ci right 8.084434e-01	k: 16059	n:20000
KS ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
NDE1   20000 perm   4 sec   (5420 perm/sec)   p_kst 8.175000e-02   p_cons 8.029500e-01   p_joint 1.642500e-01

Outputting figure to mutsig2_images.part000000000112/NDE1.4_1040_20000_0.08175_0.80295_0.16425.png
                gene_name: NDE1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
NARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
Cons ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
KS ci ratio: 1.775478e-02	ci left: 8.222885e-01	ci right 8.371189e-01	k: 8298	n:10000
NARS   10000 perm   2 sec   (5901 perm/sec)   p_kst 8.298000e-01   p_cons 2.576000e-01   p_joint 9.506000e-01

Outputting figure to mutsig2_images.part000000000112/NARS.3_1703_10000_0.8298_0.2576_0.9506.png
                gene_name: NARS
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 68 percent done.
NARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
NARS2   10000 perm   2 sec   (5836 perm/sec)   p_kst 2.686000e-01   p_cons 1.577000e-01   p_joint 1.280000e-01

Joint ci ratio: 5.780443e-02	ci left: 1.815181e-01	ci right 1.923731e-01	k: 3738	n:20000
Cons ci ratio: 6.628155e-02	ci left: 1.438940e-01	ci right 1.538083e-01	k: 2976	n:20000
KS ci ratio: 4.535856e-02	ci left: 2.656924e-01	ci right 2.780739e-01	k: 5437	n:20000
NARS2   20000 perm   4 sec   (5102 perm/sec)   p_kst 2.718500e-01   p_cons 1.488000e-01   p_joint 1.869000e-01

Outputting figure to mutsig2_images.part000000000112/NARS2.3_1490_20000_0.27185_0.1488_0.1869.png
                gene_name: NARS2
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 70 percent done.
NAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
KS ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
NAT1   10000 perm   2 sec   (6094 perm/sec)   p_kst 4.500000e-03   p_cons 2.594000e-01   p_joint 4.190000e-02

Joint ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
Cons ci ratio: 4.708049e-02	ci left: 2.513018e-01	ci right 2.634688e-01	k: 5147	n:20000
KS ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
NAT1   20000 perm   4 sec   (5301 perm/sec)   p_kst 4.450000e-03   p_cons 2.573500e-01   p_joint 4.995000e-02

Joint ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
Cons ci ratio: 3.845792e-02	ci left: 2.522610e-01	ci right 2.621861e-01	k: 7716	n:30000
KS ci ratio: 3.404351e-01	ci left: 3.652208e-03	ci right 5.179552e-03	k: 131	n:30000
NAT1   30000 perm   6 sec   (4991 perm/sec)   p_kst 4.366667e-03   p_cons 2.572000e-01   p_joint 4.506667e-02

Joint ci ratio: 1.087235e-01	ci left: 2.976121e-02	ci right 3.320724e-02	k: 1258	n:40000
Cons ci ratio: 3.319121e-02	ci left: 2.542396e-01	ci right 2.628455e-01	k: 10341	n:40000
KS ci ratio: 2.939890e-01	ci left: 3.775082e-03	ci right 5.098450e-03	k: 176	n:40000
NAT1   40000 perm   8 sec   (4818 perm/sec)   p_kst 4.400000e-03   p_cons 2.585250e-01   p_joint 3.145000e-02

Joint ci ratio: 1.374784e-01	ci left: 1.489903e-02	ci right 1.711768e-02	k: 799	n:50000
Cons ci ratio: 2.963073e-02	ci left: 2.554229e-01	ci right 2.631251e-01	k: 12963	n:50000
KS ci ratio: 2.643057e-01	ci left: 3.801426e-03	ci right 4.977259e-03	k: 218	n:50000
NAT1   50000 perm   11 sec   (4673 perm/sec)   p_kst 4.360000e-03   p_cons 2.592600e-01   p_joint 1.598000e-02

Joint ci ratio: 1.282429e-01	ci left: 1.434917e-02	ci right 1.633145e-02	k: 919	n:60000
Cons ci ratio: 2.709230e-02	ci left: 2.551496e-01	ci right 2.621738e-01	k: 15519	n:60000
KS ci ratio: 2.402693e-01	ci left: 3.886166e-03	ci right 4.962636e-03	k: 264	n:60000
NAT1   60000 perm   13 sec   (4557 perm/sec)   p_kst 4.400000e-03   p_cons 2.586500e-01   p_joint 1.531667e-02

Joint ci ratio: 1.514012e-01	ci left: 8.767145e-03	ci right 1.021681e-02	k: 663	n:70000
Cons ci ratio: 2.506362e-02	ci left: 2.557007e-01	ci right 2.622050e-01	k: 18126	n:70000
KS ci ratio: 2.225067e-01	ci left: 3.923189e-03	ci right 4.918580e-03	k: 308	n:70000
NAT1   70000 perm   16 sec   (4448 perm/sec)   p_kst 4.400000e-03   p_cons 2.589429e-01   p_joint 9.471429e-03

Joint ci ratio: 1.428498e-01	ci left: 8.658505e-03	ci right 1.000244e-02	k: 745	n:80000
Cons ci ratio: 2.343844e-02	ci left: 2.560166e-01	ci right 2.621009e-01	k: 20724	n:80000
KS ci ratio: 2.087733e-01	ci left: 3.929461e-03	ci right 4.857046e-03	k: 350	n:80000
NAT1   80000 perm   18 sec   (4324 perm/sec)   p_kst 4.375000e-03   p_cons 2.590500e-01   p_joint 9.312500e-03

Joint ci ratio: 1.381492e-01	ci left: 8.253798e-03	ci right 9.489281e-03	k: 797	n:90000
Cons ci ratio: 2.209199e-02	ci left: 2.562951e-01	ci right 2.620315e-01	k: 23324	n:90000
KS ci ratio: 1.988348e-01	ci left: 3.872438e-03	ci right 4.737769e-03	k: 386	n:90000
NAT1   90000 perm   21 sec   (4232 perm/sec)   p_kst 4.288889e-03   p_cons 2.591556e-01   p_joint 8.855556e-03

Joint ci ratio: 1.051399e-01	ci left: 1.298867e-02	ci right 1.443974e-02	k: 1370	n:100000
Cons ci ratio: 2.092923e-02	ci left: 2.569744e-01	ci right 2.624195e-01	k: 25969	n:100000
KS ci ratio: 2.048064e-01	ci left: 3.276203e-03	ci right 4.033035e-03	k: 364	n:100000
NAT1   100000 perm   24 sec   (4145 perm/sec)   p_kst 3.640000e-03   p_cons 2.596900e-01   p_joint 1.370000e-02

Joint ci ratio: 1.090137e-01	ci left: 1.098443e-02	ci right 1.225970e-02	k: 1277	n:110000
Cons ci ratio: 1.996563e-02	ci left: 2.569023e-01	ci right 2.620922e-01	k: 28544	n:110000
KS ci ratio: 1.927617e-01	ci left: 3.384408e-03	ci right 4.114868e-03	k: 411	n:110000
NAT1   110000 perm   27 sec   (4078 perm/sec)   p_kst 3.736364e-03   p_cons 2.594909e-01   p_joint 1.160909e-02

Joint ci ratio: 1.250936e-01	ci left: 7.608676e-03	ci right 8.631976e-03	k: 973	n:120000
Cons ci ratio: 1.839797e-02	ci left: 2.719432e-01	ci right 2.770011e-01	k: 32936	n:120000
KS ci ratio: 1.828189e-01	ci left: 3.467709e-03	ci right 4.173270e-03	k: 457	n:120000
NAT1   120000 perm   30 sec   (4009 perm/sec)   p_kst 3.808333e-03   p_cons 2.744667e-01   p_joint 8.108333e-03

Joint ci ratio: 1.094588e-01	ci left: 9.234201e-03	ci right 1.031091e-02	k: 1269	n:130000
Cons ci ratio: 1.767850e-02	ci left: 2.719910e-01	ci right 2.768499e-01	k: 35674	n:130000
KS ci ratio: 1.744450e-01	ci left: 3.531655e-03	ci right 4.213846e-03	k: 502	n:130000
NAT1   130000 perm   33 sec   (3945 perm/sec)   p_kst 3.861538e-03   p_cons 2.744154e-01   p_joint 9.761538e-03

Joint ci ratio: 1.070572e-01	ci left: 8.977619e-03	ci right 9.999994e-03	k: 1327	n:140000
Cons ci ratio: 1.703581e-02	ci left: 2.720709e-01	ci right 2.767527e-01	k: 38417	n:140000
KS ci ratio: 1.677412e-01	ci left: 3.559718e-03	ci right 4.218235e-03	k: 543	n:140000
NAT1   140000 perm   36 sec   (3881 perm/sec)   p_kst 3.878571e-03   p_cons 2.744071e-01   p_joint 9.478571e-03

Joint ci ratio: 1.031660e-01	ci left: 9.041252e-03	ci right 1.003118e-02	k: 1429	n:150000
Cons ci ratio: 1.645874e-02	ci left: 2.721363e-01	ci right 2.766591e-01	k: 41159	n:150000
KS ci ratio: 1.616166e-01	ci left: 3.590871e-03	ci right 4.228541e-03	k: 585	n:150000
NAT1   150000 perm   40 sec   (3795 perm/sec)   p_kst 3.900000e-03   p_cons 2.743933e-01   p_joint 9.526667e-03

Joint ci ratio: 1.071620e-01	ci left: 7.849088e-03	ci right 8.743867e-03	k: 1326	n:160000
Cons ci ratio: 1.595439e-02	ci left: 2.717532e-01	ci right 2.761300e-01	k: 43830	n:160000
KS ci ratio: 1.575082e-01	ci left: 3.552450e-03	ci right 4.165744e-03	k: 616	n:160000
NAT1   160000 perm   43 sec   (3731 perm/sec)   p_kst 3.850000e-03   p_cons 2.739375e-01   p_joint 8.287500e-03

Joint ci ratio: 8.851256e-02	ci left: 1.090076e-02	ci right 1.191601e-02	k: 1938	n:170000
Cons ci ratio: 1.547310e-02	ci left: 2.719453e-01	ci right 2.761918e-01	k: 46591	n:170000
KS ci ratio: 1.529886e-01	ci left: 3.552675e-03	ci right 4.146796e-03	k: 653	n:170000
NAT1   170000 perm   46 sec   (3672 perm/sec)   p_kst 3.841176e-03   p_cons 2.740647e-01   p_joint 1.140000e-02

Joint ci ratio: 8.683660e-02	ci left: 1.070808e-02	ci right 1.168554e-02	k: 2014	n:180000
Cons ci ratio: 1.504129e-02	ci left: 2.718961e-01	ci right 2.760223e-01	k: 49312	n:180000
KS ci ratio: 1.485136e-01	ci left: 3.569147e-03	ci right 4.147013e-03	k: 693	n:180000
NAT1   180000 perm   50 sec   (3613 perm/sec)   p_kst 3.850000e-03   p_cons 2.739556e-01   p_joint 1.118889e-02

Joint ci ratio: 8.716906e-02	ci left: 1.007227e-02	ci right 1.099539e-02	k: 2000	n:190000
Cons ci ratio: 1.465497e-02	ci left: 2.715490e-01	ci right 2.755632e-01	k: 51975	n:190000
KS ci ratio: 1.452062e-01	ci left: 3.543526e-03	ci right 4.103359e-03	k: 725	n:190000
NAT1   190000 perm   53 sec   (3558 perm/sec)   p_kst 3.815789e-03   p_cons 2.735526e-01   p_joint 1.052632e-02

Joint ci ratio: 8.598505e-02	ci left: 9.842544e-03	ci right 1.073174e-02	k: 2056	n:200000
Cons ci ratio: 1.427987e-02	ci left: 2.717119e-01	ci right 2.756247e-01	k: 54733	n:200000
KS ci ratio: 1.404462e-01	ci left: 3.607426e-03	ci right 4.157108e-03	k: 775	n:200000
NAT1   200000 perm   57 sec   (3507 perm/sec)   p_kst 3.875000e-03   p_cons 2.736650e-01   p_joint 1.028000e-02

Joint ci ratio: 8.102191e-02	ci left: 1.057694e-02	ci right 1.147473e-02	k: 2314	n:210000
Cons ci ratio: 1.393351e-02	ci left: 2.718223e-01	ci right 2.756411e-01	k: 57483	n:210000
KS ci ratio: 1.372985e-01	ci left: 3.601115e-03	ci right 4.136532e-03	k: 811	n:210000
NAT1   210000 perm   61 sec   (3455 perm/sec)   p_kst 3.861905e-03   p_cons 2.737286e-01   p_joint 1.101905e-02

Joint ci ratio: 7.486370e-02	ci left: 1.184805e-02	ci right 1.277396e-02	k: 2707	n:220000
Cons ci ratio: 1.361305e-02	ci left: 2.718694e-01	ci right 2.756002e-01	k: 60221	n:220000
KS ci ratio: 1.338001e-01	ci left: 3.626258e-03	ci right 4.150583e-03	k: 854	n:220000
NAT1   220000 perm   65 sec   (3404 perm/sec)   p_kst 3.881818e-03   p_cons 2.737318e-01   p_joint 1.230455e-02

Joint ci ratio: 7.533570e-02	ci left: 1.119625e-02	ci right 1.207699e-02	k: 2675	n:230000
Cons ci ratio: 1.331795e-02	ci left: 2.717874e-01	ci right 2.754357e-01	k: 62930	n:230000
KS ci ratio: 1.306292e-01	ci left: 3.645166e-03	ci right 4.158765e-03	k: 896	n:230000
NAT1   230000 perm   69 sec   (3355 perm/sec)   p_kst 3.895652e-03   p_cons 2.736087e-01   p_joint 1.163043e-02

Joint ci ratio: 7.683413e-02	ci left: 1.031674e-02	ci right 1.114514e-02	k: 2574	n:240000
Cons ci ratio: 1.303183e-02	ci left: 2.720001e-01	ci right 2.755721e-01	k: 65708	n:240000
KS ci ratio: 1.277419e-01	ci left: 3.658598e-03	ci right 4.161832e-03	k: 937	n:240000
NAT1   240000 perm   73 sec   (3306 perm/sec)   p_kst 3.904167e-03   p_cons 2.737833e-01   p_joint 1.072500e-02

Joint ci ratio: 7.613699e-02	ci left: 1.009235e-02	ci right 1.089506e-02	k: 2622	n:250000
Cons ci ratio: 1.276851e-02	ci left: 2.720367e-01	ci right 2.755365e-01	k: 68446	n:250000
KS ci ratio: 1.243386e-01	ci left: 3.713703e-03	ci right 4.209906e-03	k: 989	n:250000
NAT1   250000 perm   77 sec   (3259 perm/sec)   p_kst 3.956000e-03   p_cons 2.737840e-01   p_joint 1.048800e-02

Joint ci ratio: 7.513196e-02	ci left: 9.972071e-03	ci right 1.075429e-02	k: 2693	n:260000
Cons ci ratio: 1.252272e-02	ci left: 2.720022e-01	ci right 2.754336e-01	k: 71166	n:260000
KS ci ratio: 1.217224e-01	ci left: 3.731165e-03	ci right 4.218456e-03	k: 1032	n:260000
NAT1   260000 perm   81 sec   (3212 perm/sec)   p_kst 3.969231e-03   p_cons 2.737154e-01   p_joint 1.035769e-02

Joint ci ratio: 7.439702e-02	ci left: 9.798963e-03	ci right 1.055975e-02	k: 2747	n:270000
Cons ci ratio: 1.229816e-02	ci left: 2.717268e-01	ci right 2.750929e-01	k: 73820	n:270000
KS ci ratio: 1.192647e-01	ci left: 3.747435e-03	ci right 4.226272e-03	k: 1075	n:270000
NAT1   270000 perm   85 sec   (3168 perm/sec)   p_kst 3.981481e-03   p_cons 2.734074e-01   p_joint 1.017407e-02

Joint ci ratio: 7.012879e-02	ci left: 1.064853e-02	ci right 1.142592e-02	k: 3089	n:280000
Cons ci ratio: 1.207700e-02	ci left: 2.717426e-01	ci right 2.750479e-01	k: 76550	n:280000
KS ci ratio: 1.170026e-01	ci left: 3.759167e-03	ci right 4.229762e-03	k: 1117	n:280000
NAT1   280000 perm   90 sec   (3126 perm/sec)   p_kst 3.989286e-03   p_cons 2.733929e-01   p_joint 1.103214e-02

Joint ci ratio: 7.006212e-02	ci left: 1.030499e-02	ci right 1.105656e-02	k: 3096	n:290000
Cons ci ratio: 1.186499e-02	ci left: 2.718369e-01	ci right 2.750849e-01	k: 79303	n:290000
KS ci ratio: 1.148149e-01	ci left: 3.773519e-03	ci right 4.236480e-03	k: 1160	n:290000
NAT1   290000 perm   94 sec   (3087 perm/sec)   p_kst 4.000000e-03   p_cons 2.734586e-01   p_joint 1.067586e-02

Joint ci ratio: 7.039698e-02	ci left: 9.869721e-03	ci right 1.059312e-02	k: 3068	n:300000
Cons ci ratio: 1.166455e-02	ci left: 2.718988e-01	ci right 2.750923e-01	k: 82048	n:300000
KS ci ratio: 1.128867e-01	ci left: 3.777272e-03	ci right 4.232392e-03	k: 1200	n:300000
NAT1   300000 perm   98 sec   (3048 perm/sec)   p_kst 4.000000e-03   p_cons 2.734933e-01   p_joint 1.022667e-02

Joint ci ratio: 6.104814e-02	ci left: 1.272493e-02	ci right 1.352937e-02	k: 4068	n:310000
Cons ci ratio: 1.146919e-02	ci left: 2.721213e-01	ci right 2.752635e-01	k: 84844	n:310000
KS ci ratio: 1.110076e-01	ci left: 3.783980e-03	ci right 4.231822e-03	k: 1241	n:310000
NAT1   310000 perm   103 sec   (3009 perm/sec)   p_kst 4.003226e-03   p_cons 2.736903e-01   p_joint 1.312258e-02

Joint ci ratio: 6.334710e-02	ci left: 1.145025e-02	ci right 1.220238e-02	k: 3783	n:320000
Cons ci ratio: 1.128989e-02	ci left: 2.720996e-01	ci right 2.751920e-01	k: 87566	n:320000
KS ci ratio: 1.092621e-01	ci left: 3.787287e-03	ci right 4.228020e-03	k: 1281	n:320000
NAT1   320000 perm   108 sec   (2971 perm/sec)   p_kst 4.003125e-03   p_cons 2.736438e-01   p_joint 1.182188e-02

Joint ci ratio: 6.329095e-02	ci left: 1.112708e-02	ci right 1.185730e-02	k: 3791	n:330000
Cons ci ratio: 1.111942e-02	ci left: 2.720553e-01	ci right 2.751002e-01	k: 90280	n:330000
KS ci ratio: 1.078013e-01	ci left: 3.775701e-03	ci right 4.208838e-03	k: 1316	n:330000
NAT1   330000 perm   112 sec   (2935 perm/sec)   p_kst 3.987879e-03   p_cons 2.735758e-01   p_joint 1.148788e-02

Joint ci ratio: 6.600387e-02	ci left: 9.928616e-03	ci right 1.060918e-02	k: 3490	n:340000
Cons ci ratio: 1.095352e-02	ci left: 2.721196e-01	ci right 2.751196e-01	k: 93030	n:340000
KS ci ratio: 1.065957e-01	ci left: 3.750518e-03	ci right 4.175652e-03	k: 1346	n:340000
NAT1   340000 perm   117 sec   (2897 perm/sec)   p_kst 3.958824e-03   p_cons 2.736176e-01   p_joint 1.026471e-02

Joint ci ratio: 6.541999e-02	ci left: 9.821966e-03	ci right 1.048904e-02	k: 3553	n:350000
Cons ci ratio: 1.079577e-02	ci left: 2.721463e-01	ci right 2.751031e-01	k: 95768	n:350000
KS ci ratio: 1.052379e-01	ci left: 3.740710e-03	ci right 4.158997e-03	k: 1381	n:350000
NAT1   350000 perm   122 sec   (2862 perm/sec)   p_kst 3.945714e-03   p_cons 2.736229e-01   p_joint 1.015143e-02

Joint ci ratio: 6.470685e-02	ci left: 9.764998e-03	ci right 1.042070e-02	k: 3632	n:360000
Cons ci ratio: 1.064747e-02	ci left: 2.720665e-01	ci right 2.749816e-01	k: 98468	n:360000
KS ci ratio: 1.037472e-01	ci left: 3.745009e-03	ci right 4.157483e-03	k: 1421	n:360000
NAT1   360000 perm   127 sec   (2827 perm/sec)   p_kst 3.947222e-03   p_cons 2.735222e-01   p_joint 1.008889e-02

Joint ci ratio: 6.380847e-02	ci left: 9.774986e-03	ci right 1.042191e-02	k: 3735	n:370000
Cons ci ratio: 1.050133e-02	ci left: 2.721343e-01	ci right 2.750098e-01	k: 101221	n:370000
KS ci ratio: 1.019337e-01	ci left: 3.778089e-03	ci right 4.186497e-03	k: 1472	n:370000
NAT1   370000 perm   132 sec   (2793 perm/sec)   p_kst 3.978378e-03   p_cons 2.735703e-01   p_joint 1.009459e-02

Joint ci ratio: 6.298794e-02	ci left: 9.771555e-03	ci right 1.040963e-02	k: 3833	n:380000
Cons ci ratio: 1.036325e-02	ci left: 2.721147e-01	ci right 2.749519e-01	k: 103942	n:380000
KS ci ratio: 1.002782e-01	ci left: 3.804355e-03	ci right 4.208530e-03	k: 1521	n:380000
NAT1   380000 perm   138 sec   (2759 perm/sec)   p_kst 4.002632e-03   p_cons 2.735316e-01   p_joint 1.008684e-02

Joint ci ratio: 6.081500e-02	ci left: 1.022034e-02	ci right 1.086389e-02	k: 4110	n:390000
Cons ci ratio: 1.022823e-02	ci left: 2.721833e-01	ci right 2.749841e-01	k: 106697	n:390000
KS ci ratio: 9.904964e-02	ci left: 3.801814e-03	ci right 4.200483e-03	k: 1559	n:390000
NAT1   390000 perm   143 sec   (2725 perm/sec)   p_kst 3.997436e-03   p_cons 2.735821e-01   p_joint 1.053846e-02

Outputting figure to mutsig2_images.part000000000112/NAT1.3_1071_390000_0.0039974_0.27358_0.010538.png
                gene_name: NAT1
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0038 
       ci_ks_bounds_right: 0.0042 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 71 percent done.
NCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 1.586443e-02	ci left: 8.523304e-01	ci right 8.660597e-01	k: 8593	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
NCK1   10000 perm   2 sec   (6055 perm/sec)   p_kst 1.323000e-01   p_cons 8.593000e-01   p_joint 4.437000e-01

Joint ci ratio: 6.457041e-02	ci left: 1.505524e-01	ci right 1.606479e-01	k: 3111	n:20000
Cons ci ratio: 1.143638e-02	ci left: 8.495874e-01	ci right 8.594093e-01	k: 17091	n:20000
KS ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
NCK1   20000 perm   4 sec   (5306 perm/sec)   p_kst 1.283000e-01   p_cons 8.545500e-01   p_joint 1.555500e-01

Outputting figure to mutsig2_images.part000000000112/NCK1.3_1146_20000_0.1283_0.85455_0.15555.png
                gene_name: NCK1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 73 percent done.
NCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
KS ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
NCK2   10000 perm   2 sec   (6038 perm/sec)   p_kst 3.658000e-01   p_cons 3.054000e-01   p_joint 4.120000e-01

Outputting figure to mutsig2_images.part000000000112/NCK2.3_1155_10000_0.3658_0.3054_0.412.png
                gene_name: NCK2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 74 percent done.
NAP1L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
Cons ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
NAP1L5   10000 perm   1 sec   (7253 perm/sec)   p_kst 8.820000e-02   p_cons 5.202000e-01   p_joint 5.408000e-01

Joint ci ratio: 4.119468e-02	ci left: 3.051840e-01	ci right 3.180708e-01	k: 6232	n:20000
Cons ci ratio: 2.656799e-02	ci left: 5.141990e-01	ci right 5.280948e-01	k: 10423	n:20000
KS ci ratio: 8.945464e-02	ci left: 8.366805e-02	ci right 9.155233e-02	k: 1751	n:20000
NAP1L5   20000 perm   3 sec   (6181 perm/sec)   p_kst 8.755000e-02   p_cons 5.211500e-01   p_joint 3.116000e-01

Outputting figure to mutsig2_images.part000000000112/NAP1L5.2_553_20000_0.08755_0.52115_0.3116.png
                gene_name: NAP1L5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 76 percent done.
NAPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 2.677188e-02	ci left: 6.726697e-01	ci right 6.910243e-01	k: 6819	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
NAPB   10000 perm   2 sec   (6547 perm/sec)   p_kst 8.050000e-02   p_cons 6.819000e-01   p_joint 1.241000e-01

Joint ci ratio: 7.451510e-02	ci left: 1.170024e-01	ci right 1.261079e-01	k: 2430	n:20000
Cons ci ratio: 1.884399e-02	ci left: 6.774048e-01	ci right 6.903417e-01	k: 13678	n:20000
KS ci ratio: 9.454337e-02	ci left: 7.539590e-02	ci right 8.292699e-02	k: 1582	n:20000
NAPB   20000 perm   4 sec   (5572 perm/sec)   p_kst 7.910000e-02   p_cons 6.839000e-01   p_joint 1.215000e-01

Outputting figure to mutsig2_images.part000000000112/NAPB.2_941_20000_0.0791_0.6839_0.1215.png
                gene_name: NAPB
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 77 percent done.
NARFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
KS ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
NARFL   10000 perm   2 sec   (6288 perm/sec)   p_kst 1.000000e-01   p_cons 6.235000e-01   p_joint 3.581000e-01

Joint ci ratio: 3.727716e-02	ci left: 3.493604e-01	ci right 3.626815e-01	k: 7120	n:20000
Cons ci ratio: 2.168318e-02	ci left: 6.135821e-01	ci right 6.270829e-01	k: 12407	n:20000
KS ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
NARFL   20000 perm   4 sec   (5446 perm/sec)   p_kst 1.022000e-01   p_cons 6.203500e-01   p_joint 3.560000e-01

Outputting figure to mutsig2_images.part000000000112/NARFL.2_1475_20000_0.1022_0.62035_0.356.png
                gene_name: NARFL
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 79 percent done.
NASP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
Cons ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
KS ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
NASP   10000 perm   2 sec   (5949 perm/sec)   p_kst 2.289000e-01   p_cons 7.096000e-01   p_joint 7.421000e-01

Outputting figure to mutsig2_images.part000000000112/NASP.2_2504_10000_0.2289_0.7096_0.7421.png
                gene_name: NASP
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 80 percent done.
NAT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.165368e-02	ci left: 4.597784e-01	ci right 4.794394e-01	k: 4696	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
NAT10   10000 perm   2 sec   (5177 perm/sec)   p_kst 7.735000e-01   p_cons 4.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAT10.2_3190_10000_0.7735_0.4696_1.png
                gene_name: NAT10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
Cons ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
NAT2   10000 perm   2 sec   (6487 perm/sec)   p_kst 9.480000e-02   p_cons 4.990000e-01   p_joint 7.930000e-01

Joint ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
Cons ci ratio: 2.747919e-02	ci left: 4.973455e-01	ci right 5.112532e-01	k: 10086	n:20000
KS ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
NAT2   20000 perm   4 sec   (5561 perm/sec)   p_kst 9.450000e-02   p_cons 5.043000e-01   p_joint 3.676000e-01

Outputting figure to mutsig2_images.part000000000112/NAT2.2_877_20000_0.0945_0.5043_0.3676.png
                gene_name: NAT2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 83 percent done.
NBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
Cons ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
KS ci ratio: 4.040405e-02	ci left: 4.749603e-01	ci right 4.946485e-01	k: 4848	n:10000
NBL1   10000 perm   1 sec   (7169 perm/sec)   p_kst 4.848000e-01   p_cons 3.768000e-01   p_joint 7.684000e-01

Outputting figure to mutsig2_images.part000000000112/NBL1.2_667_10000_0.4848_0.3768_0.7684.png
                gene_name: NBL1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 85 percent done.
NBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
Cons ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
KS ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
NBR1   10000 perm   2 sec   (5331 perm/sec)   p_kst 5.751000e-01   p_cons 9.207000e-01   p_joint 7.674000e-01

Outputting figure to mutsig2_images.part000000000112/NBR1.2_2981_10000_0.5751_0.9207_0.7674.png
                gene_name: NBR1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 86 percent done.
NCALD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
Cons ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
KS ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
NCALD   10000 perm   1 sec   (6940 perm/sec)   p_kst 4.809000e-01   p_cons 3.210000e-01   p_joint 9.577000e-01

Outputting figure to mutsig2_images.part000000000112/NCALD.2_594_10000_0.4809_0.321_0.9577.png
                gene_name: NCALD
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 88 percent done.
NCCRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.276191e-02	ci left: 5.789809e-01	ci right 5.983674e-01	k: 5887	n:10000
KS ci ratio: 4.951351e-02	ci left: 3.756466e-01	ci right 3.948203e-01	k: 3852	n:10000
NCCRP1   10000 perm   2 sec   (6569 perm/sec)   p_kst 3.852000e-01   p_cons 5.887000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCCRP1.2_852_10000_0.3852_0.5887_1.png
                gene_name: NCCRP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
NCEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
NCEH1   10000 perm   2 sec   (6304 perm/sec)   p_kst 8.185000e-01   p_cons 6.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCEH1.2_1367_10000_0.8185_0.6908_1.png
                gene_name: NCEH1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
NCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
NCF2   10000 perm   2 sec   (6128 perm/sec)   p_kst 7.886000e-01   p_cons 1.219000e-01   p_joint 8.054000e-01

Joint ci ratio: 2.180533e-02	ci left: 6.109235e-01	ci right 6.244423e-01	k: 12354	n:20000
Cons ci ratio: 7.387652e-02	ci left: 1.188226e-01	ci right 1.279872e-01	k: 2467	n:20000
KS ci ratio: 1.413616e-02	ci left: 7.879235e-01	ci right 7.991911e-01	k: 15872	n:20000
NCF2   20000 perm   4 sec   (5307 perm/sec)   p_kst 7.936000e-01   p_cons 1.233500e-01   p_joint 6.177000e-01

Outputting figure to mutsig2_images.part000000000112/NCF2.2_1641_20000_0.7936_0.12335_0.6177.png
                gene_name: NCF2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 92 percent done.
NCF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
NCF4   10000 perm   2 sec   (6421 perm/sec)   p_kst 9.030000e-02   p_cons 7.994000e-01   p_joint 1

Joint ci ratio: 3.030021e-02	ci left: 4.486298e-01	ci right 4.624831e-01	k: 9111	n:20000
Cons ci ratio: 1.324161e-02	ci left: 8.087391e-01	ci right 8.195694e-01	k: 16284	n:20000
KS ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
NCF4   20000 perm   4 sec   (5571 perm/sec)   p_kst 8.995000e-02   p_cons 8.142000e-01   p_joint 4.555500e-01

Outputting figure to mutsig2_images.part000000000112/NCF4.2_1301_20000_0.08995_0.8142_0.45555.png
                gene_name: NCF4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 94 percent done.
NCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
NCR1   10000 perm   1 sec   (6693 perm/sec)   p_kst 8.280000e-02   p_cons 9.315000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.418058e-03	ci left: 9.296513e-01	ci right 9.366221e-01	k: 18664	n:20000
KS ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
NCR1   20000 perm   3 sec   (5729 perm/sec)   p_kst 8.215000e-02   p_cons 9.332000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCR1.2_943_20000_0.08215_0.9332_1.png
                gene_name: NCR1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
NCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
Cons ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
KS ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
NCS1   10000 perm   1 sec   (6787 perm/sec)   p_kst 2.637000e-01   p_cons 4.933000e-01   p_joint 3.441000e-01

Outputting figure to mutsig2_images.part000000000112/NCS1.2_615_10000_0.2637_0.4933_0.3441.png
                gene_name: NCS1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 97 percent done.
NDEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
KS ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
NDEL1   10000 perm   1 sec   (6889 perm/sec)   p_kst 7.114000e-01   p_cons 9.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NDEL1.2_1109_10000_0.7114_0.9132_1.png
                gene_name: NDEL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
NDFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
Cons ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
KS ci ratio: 5.701213e-02	ci left: 3.117537e-01	ci right 3.301507e-01	k: 3209	n:10000
NDFIP2   10000 perm   1 sec   (6758 perm/sec)   p_kst 3.209000e-01   p_cons 1.910000e-02   p_joint 2.920000e-02

Joint ci ratio: 1.624178e-01	ci left: 2.599753e-02	ci right 3.064096e-02	k: 565	n:20000
Cons ci ratio: 2.061923e-01	ci left: 1.591794e-02	ci right 1.962416e-02	k: 354	n:20000
KS ci ratio: 4.027676e-02	ci left: 3.148792e-01	ci right 3.278727e-01	k: 6427	n:20000
NDFIP2   20000 perm   3 sec   (5863 perm/sec)   p_kst 3.213500e-01   p_cons 1.770000e-02   p_joint 2.825000e-02

Joint ci ratio: 1.328564e-01	ci left: 2.632361e-02	ci right 3.010183e-02	k: 845	n:30000
Cons ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
KS ci ratio: 3.299927e-02	ci left: 3.145897e-01	ci right 3.251786e-01	k: 9596	n:30000
NDFIP2   30000 perm   5 sec   (5532 perm/sec)   p_kst 3.198667e-01   p_cons 1.810000e-02   p_joint 2.816667e-02

Joint ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
Cons ci ratio: 1.415001e-01	ci left: 1.749153e-02	ci right 2.017897e-02	k: 752	n:40000
KS ci ratio: 2.857657e-02	ci left: 3.153297e-01	ci right 3.244965e-01	k: 12796	n:40000
NDFIP2   40000 perm   8 sec   (5326 perm/sec)   p_kst 3.199000e-01   p_cons 1.880000e-02   p_joint 2.912500e-02

Joint ci ratio: 1.062532e-01	ci left: 2.509022e-02	ci right 2.792512e-02	k: 1324	n:50000
Cons ci ratio: 1.268540e-01	ci left: 1.755001e-02	ci right 1.994632e-02	k: 936	n:50000
KS ci ratio: 2.549548e-02	ci left: 3.169083e-01	ci right 3.251124e-01	k: 16050	n:50000
NDFIP2   50000 perm   10 sec   (5152 perm/sec)   p_kst 3.210000e-01   p_cons 1.872000e-02   p_joint 2.648000e-02

Joint ci ratio: 9.276627e-02	ci left: 2.755774e-02	ci right 3.025475e-02	k: 1733	n:60000
Cons ci ratio: 1.170489e-01	ci left: 1.727491e-02	ci right 1.943870e-02	k: 1100	n:60000
KS ci ratio: 2.329297e-02	ci left: 3.169159e-01	ci right 3.244015e-01	k: 19239	n:60000
NDFIP2   60000 perm   12 sec   (5006 perm/sec)   p_kst 3.206500e-01   p_cons 1.833333e-02   p_joint 2.888333e-02

Joint ci ratio: 8.534347e-02	ci left: 2.800711e-02	ci right 3.051782e-02	k: 2047	n:70000
Cons ci ratio: 1.070785e-01	ci left: 1.777888e-02	ci right 1.980414e-02	k: 1314	n:70000
KS ci ratio: 2.155073e-02	ci left: 3.174849e-01	ci right 3.244157e-01	k: 22466	n:70000
NDFIP2   70000 perm   14 sec   (4868 perm/sec)   p_kst 3.209429e-01   p_cons 1.877143e-02   p_joint 2.924286e-02

Joint ci ratio: 8.030234e-02	ci left: 2.776224e-02	ci right 3.009709e-02	k: 2313	n:80000
Cons ci ratio: 1.007056e-01	ci left: 1.765063e-02	ci right 1.953452e-02	k: 1486	n:80000
KS ci ratio: 2.015804e-02	ci left: 3.177278e-01	ci right 3.242102e-01	k: 25677	n:80000
NDFIP2   80000 perm   17 sec   (4747 perm/sec)   p_kst 3.209625e-01   p_cons 1.857500e-02   p_joint 2.891250e-02

Joint ci ratio: 7.551959e-02	ci left: 2.796787e-02	ci right 3.017374e-02	k: 2615	n:90000
Cons ci ratio: 9.462614e-02	ci left: 1.782497e-02	ci right 1.960624e-02	k: 1683	n:90000
KS ci ratio: 1.901766e-02	ci left: 3.176287e-01	ci right 3.237384e-01	k: 28861	n:90000
NDFIP2   90000 perm   19 sec   (4635 perm/sec)   p_kst 3.206778e-01   p_cons 1.870000e-02   p_joint 2.905556e-02

Outputting figure to mutsig2_images.part000000000112/NDFIP2.2_1039_90000_0.32068_0.0187_0.029056.png
                gene_name: NDFIP2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000112
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 112 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 4422220: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000113> was used as the working directory.
Started at Wed Oct 24 18:00:51 2012
Results reported at Wed Oct 24 18:16:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000113.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000113.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 113  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000113.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    995.09 sec.
    Max Memory :      5267 MB
    Max Swap   :      8073 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
113
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 113
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 113: processing genes 10134 - 10223
Calculating significance of each gene.
Using projection method.
10134	NDP	1.591912e-02
10135	NDRG1	8.711554e-01
10136	NDRG2	7.173545e-01
10137	NDRG3	1
10138	NDRG4	6.976613e-01
10139	NDST1	1
10140	NDST2	6.278809e-01
10141	NDST3	9.315944e-01
10142	NDST4	6.965472e-01
10143	NDUFA1	1
10144	NDUFA10	1
10145	NDUFA11	3.213594e-01
10146	NDUFA12	2.440471e-01
10147	NDUFA13	1.012174e-02
10148	NDUFA2	1
10149	NDUFA3	1
10150	NDUFA4	3.129031e-01
10151	NDUFA4L2	1
10152	NDUFA5	1
10153	NDUFA6	1
10154	NDUFA7	1
10155	NDUFA8	1.310828e-01
10156	NDUFA9	2.000451e-01
10157	NDUFAB1	1
10158	NDUFAF1	8.823832e-01
10159	NDUFAF2	1
10160	NDUFAF3	1
10161	NDUFAF4	4.415432e-01
10162	NDUFB1	1
10163	NDUFB10	1
10164	NDUFB11	3.217269e-01
10165	NDUFB2	2.781394e-02
10166	NDUFB3	1
10167	NDUFB4	3.998947e-01
10168	NDUFB5	1.131706e-02
10169	NDUFB6	3.357237e-01
10170	NDUFB7	1
10171	NDUFB8	1
10172	NDUFB9	6.720730e-01
10173	NDUFC1	1
10174	NDUFC2	3.360183e-01
10175	NDUFS1	8.514860e-01
10176	NDUFS2	2.820919e-01
10177	NDUFS3	6.258197e-01
10178	NDUFS4	4.836757e-01
10179	NDUFS5	1
10180	NDUFS6	5.803530e-01
10181	NDUFS7	1
10182	NDUFS8	6.532419e-01
10183	NDUFV1	9.334941e-01
10184	NDUFV2	1
10185	NDUFV3	1
10186	NEB	1
10187	NEBL	6.003334e-01
10188	NECAB1	1
10189	NECAB2	6.990170e-01
10190	NECAB3	6.320675e-01
10191	NECAP1	3.991393e-01
10192	NECAP2	1
10193	NEDD1	1.582114e-01
10194	NEDD4	6.859859e-01
10195	NEDD4L	8.662628e-01
10196	NEDD8	2.412348e-02
10197	NEDD9	9.837342e-01
10198	NEFH	1
10199	NEFL	6.463281e-02
10200	NEFM	4.027308e-01
10201	NEGR1	1
10202	NEIL1	8.016845e-01
10203	NEIL2	1
10204	NEIL3	2.103323e-01
10205	NEK1	1
10206	NEK10	5.350830e-02
10207	NEK11	5.176510e-01
10208	NEK2	4.972812e-01
10209	NEK3	1.436531e-01
10210	NEK4	8.274394e-01
10211	NEK5	1
10212	NEK6	1
10213	NEK7	1
10214	NEK8	1
10215	NEK9	8.583516e-01
10216	NELF	1
10217	NELL1	3.443119e-04
10218	NELL2	3.532409e-01
10219	NENF	1
10220	NEO1	3.127571e-01
10221	NES	9.895644e-01
10222	NET1	6.215463e-01
10223	NETO1	4.455418e-01
Done

Running MutSig 2:
Scatter job 113: processing genes 10134 - 10223
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NEB
Processing conservation and coverage...
37% 75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
Cons ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
NEB   10000 perm   6 sec   (1770 perm/sec)   p_kst 2.790000e-02   p_cons 2.604000e-01   p_joint 2.540000e-02

Joint ci ratio: 1.734545e-01	ci left: 2.273688e-02	ci right 2.710273e-02	k: 497	n:20000
Cons ci ratio: 4.387124e-02	ci left: 2.789988e-01	ci right 2.915637e-01	k: 5705	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
NEB   20000 perm   14 sec   (1439 perm/sec)   p_kst 2.930000e-02   p_cons 2.852500e-01   p_joint 2.485000e-02

Joint ci ratio: 9.927831e-02	ci left: 4.694235e-02	ci right 5.187871e-02	k: 1481	n:30000
Cons ci ratio: 3.583249e-02	ci left: 2.800288e-01	ci right 2.902795e-01	k: 8554	n:30000
KS ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
NEB   30000 perm   20 sec   (1497 perm/sec)   p_kst 2.923333e-02   p_cons 2.851333e-01   p_joint 4.936667e-02

Joint ci ratio: 8.935971e-02	ci left: 4.384527e-02	ci right 4.797098e-02	k: 1835	n:40000
Cons ci ratio: 3.098184e-02	ci left: 2.813757e-01	ci right 2.902554e-01	k: 11432	n:40000
KS ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
NEB   40000 perm   26 sec   (1523 perm/sec)   p_kst 2.925000e-02   p_cons 2.858000e-01   p_joint 4.587500e-02

Joint ci ratio: 1.024259e-01	ci left: 2.700042e-02	ci right 2.993467e-02	k: 1422	n:50000
Cons ci ratio: 2.765850e-02	ci left: 2.826192e-01	ci right 2.905656e-01	k: 14329	n:50000
KS ci ratio: 9.978618e-02	ci left: 2.844404e-02	ci right 3.145086e-02	k: 1496	n:50000
NEB   50000 perm   33 sec   (1533 perm/sec)   p_kst 2.992000e-02   p_cons 2.865800e-01   p_joint 2.844000e-02

Joint ci ratio: 7.781027e-02	ci left: 3.900202e-02	ci right 4.217595e-02	k: 2434	n:60000
Cons ci ratio: 2.526719e-02	ci left: 2.826685e-01	ci right 2.899188e-01	k: 17177	n:60000
KS ci ratio: 9.279383e-02	ci left: 2.754145e-02	ci right 3.023771e-02	k: 1732	n:60000
NEB   60000 perm   39 sec   (1529 perm/sec)   p_kst 2.886667e-02   p_cons 2.862833e-01   p_joint 4.056667e-02

Outputting figure to mutsig2_images.part000000000113/NEB.36_26407_60000_0.028867_0.28628_0.040567.png
                gene_name: NEB
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 2 percent done.
NELL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
Cons ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
KS ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
NELL1   10000 perm   2 sec   (4706 perm/sec)   p_kst 4.015000e-01   p_cons 5.001000e-01   p_joint 4.922000e-01

Outputting figure to mutsig2_images.part000000000113/NELL1.21_2513_10000_0.4015_0.5001_0.4922.png
                gene_name: NELL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 5 percent done.
NETO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
NETO1   10000 perm   2 sec   (4734 perm/sec)   p_kst 6.740000e-02   p_cons 3.690000e-02   p_joint 4.360000e-02

Joint ci ratio: 1.511123e-01	ci left: 3.008562e-02	ci right 3.505150e-02	k: 650	n:20000
Cons ci ratio: 1.305247e-01	ci left: 4.032708e-02	ci right 4.600670e-02	k: 862	n:20000
KS ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
NETO1   20000 perm   5 sec   (4342 perm/sec)   p_kst 6.530000e-02   p_cons 4.310000e-02   p_joint 3.250000e-02

Joint ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
Cons ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
KS ci ratio: 8.289592e-02	ci left: 6.648402e-02	ci right 7.226638e-02	k: 2080	n:30000
NETO1   30000 perm   7 sec   (4192 perm/sec)   p_kst 6.933333e-02   p_cons 4.186667e-02   p_joint 3.876667e-02

Joint ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
Cons ci ratio: 9.349108e-02	ci left: 4.012839e-02	ci right 4.408843e-02	k: 1683	n:40000
KS ci ratio: 7.092426e-02	ci left: 6.842810e-02	ci right 7.348440e-02	k: 2837	n:40000
NETO1   40000 perm   10 sec   (4084 perm/sec)   p_kst 7.092500e-02   p_cons 4.207500e-02   p_joint 3.052500e-02

Joint ci ratio: 1.009744e-01	ci left: 2.778063e-02	ci right 3.075436e-02	k: 1462	n:50000
Cons ci ratio: 8.459067e-02	ci left: 3.943538e-02	ci right 4.293814e-02	k: 2058	n:50000
KS ci ratio: 6.298401e-02	ci left: 6.963094e-02	ci right 7.417891e-02	k: 3594	n:50000
NETO1   50000 perm   13 sec   (3998 perm/sec)   p_kst 7.188000e-02   p_cons 4.116000e-02   p_joint 2.924000e-02

Joint ci ratio: 1.004910e-01	ci left: 2.348904e-02	ci right 2.599055e-02	k: 1483	n:60000
Cons ci ratio: 7.721722e-02	ci left: 3.959085e-02	ci right 4.278705e-02	k: 2470	n:60000
KS ci ratio: 5.770561e-02	ci left: 6.935211e-02	ci right 7.348946e-02	k: 4284	n:60000
NETO1   60000 perm   15 sec   (3914 perm/sec)   p_kst 7.140000e-02   p_cons 4.116667e-02   p_joint 2.471667e-02

Joint ci ratio: 9.081137e-02	ci left: 2.474985e-02	ci right 2.711824e-02	k: 1814	n:70000
Cons ci ratio: 7.153895e-02	ci left: 3.965531e-02	ci right 4.261146e-02	k: 2878	n:70000
KS ci ratio: 5.357042e-02	ci left: 6.915044e-02	ci right 7.297092e-02	k: 4973	n:70000
NETO1   70000 perm   18 sec   (3842 perm/sec)   p_kst 7.104286e-02   p_cons 4.111429e-02   p_joint 2.591429e-02

Outputting figure to mutsig2_images.part000000000113/NETO1.18_1680_70000_0.071043_0.041114_0.025914.png
                gene_name: NETO1
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 7 percent done.
NELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
Cons ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
NELL2   10000 perm   2 sec   (4385 perm/sec)   p_kst 2.170000e-02   p_cons 5.720000e-02   p_joint 1.930000e-02

Joint ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
Cons ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
KS ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
NELL2   20000 perm   5 sec   (4002 perm/sec)   p_kst 2.320000e-02   p_cons 5.855000e-02   p_joint 1.030000e-02

Joint ci ratio: 2.286735e-01	ci left: 8.590510e-03	ci right 1.083930e-02	k: 290	n:30000
Cons ci ratio: 9.038324e-02	ci left: 5.632722e-02	ci right 6.169192e-02	k: 1769	n:30000
KS ci ratio: 1.544004e-01	ci left: 1.940733e-02	ci right 2.268634e-02	k: 630	n:30000
NELL2   30000 perm   8 sec   (3846 perm/sec)   p_kst 2.100000e-02   p_cons 5.896667e-02   p_joint 9.666667e-03

Joint ci ratio: 1.849973e-01	ci left: 1.007253e-02	ci right 1.214936e-02	k: 443	n:40000
Cons ci ratio: 7.846899e-02	ci left: 5.641603e-02	ci right 6.104829e-02	k: 2348	n:40000
KS ci ratio: 1.319895e-01	ci left: 2.014929e-02	ci right 2.302075e-02	k: 862	n:40000
NELL2   40000 perm   11 sec   (3750 perm/sec)   p_kst 2.155000e-02   p_cons 5.870000e-02   p_joint 1.107500e-02

Joint ci ratio: 1.191176e-01	ci left: 1.993580e-02	ci right 2.248021e-02	k: 1059	n:50000
Cons ci ratio: 7.080508e-02	ci left: 5.571122e-02	ci right 5.982031e-02	k: 2887	n:50000
KS ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
NELL2   50000 perm   14 sec   (3676 perm/sec)   p_kst 2.138000e-02   p_cons 5.774000e-02   p_joint 2.118000e-02

Joint ci ratio: 1.172661e-01	ci left: 1.721017e-02	ci right 1.937012e-02	k: 1096	n:60000
Cons ci ratio: 6.468157e-02	ci left: 5.581451e-02	ci right 5.956175e-02	k: 3460	n:60000
KS ci ratio: 1.085215e-01	ci left: 2.012714e-02	ci right 2.245282e-02	k: 1276	n:60000
NELL2   60000 perm   17 sec   (3613 perm/sec)   p_kst 2.126667e-02   p_cons 5.766667e-02   p_joint 1.826667e-02

Joint ci ratio: 1.186925e-01	ci left: 1.443145e-02	ci right 1.626619e-02	k: 1073	n:70000
Cons ci ratio: 5.986651e-02	ci left: 5.598386e-02	ci right 5.945291e-02	k: 4039	n:70000
KS ci ratio: 1.011265e-01	ci left: 1.995056e-02	ci right 2.208940e-02	k: 1470	n:70000
NELL2   70000 perm   20 sec   (3553 perm/sec)   p_kst 2.100000e-02   p_cons 5.770000e-02   p_joint 1.532857e-02

Joint ci ratio: 1.045696e-01	ci left: 1.635905e-02	ci right 1.817620e-02	k: 1380	n:80000
Cons ci ratio: 5.597523e-02	ci left: 5.614336e-02	ci right 5.938880e-02	k: 4620	n:80000
KS ci ratio: 9.517934e-02	ci left: 1.977338e-02	ci right 2.176159e-02	k: 1660	n:80000
NELL2   80000 perm   23 sec   (3500 perm/sec)   p_kst 2.075000e-02   p_cons 5.775000e-02   p_joint 1.725000e-02

Joint ci ratio: 9.893401e-02	ci left: 1.629556e-02	ci right 1.800243e-02	k: 1542	n:90000
Cons ci ratio: 5.295599e-02	ci left: 5.586712e-02	ci right 5.891704e-02	k: 5164	n:90000
KS ci ratio: 8.914406e-02	ci left: 2.009488e-02	ci right 2.198061e-02	k: 1892	n:90000
NELL2   90000 perm   26 sec   (3447 perm/sec)   p_kst 2.102222e-02   p_cons 5.737778e-02   p_joint 1.713333e-02

Outputting figure to mutsig2_images.part000000000113/NELL2.14_2783_90000_0.021022_0.057378_0.017133.png
                gene_name: NELL2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 9 percent done.
NDST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
NDST4   10000 perm   2 sec   (4556 perm/sec)   p_kst 6.284000e-01   p_cons 2.000000e-01   p_joint 4.780000e-01

Outputting figure to mutsig2_images.part000000000113/NDST4.13_2671_10000_0.6284_0.2_0.478.png
                gene_name: NDST4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 11 percent done.
NEO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
NEO1   10000 perm   2 sec   (4531 perm/sec)   p_kst 2.820000e-02   p_cons 2.123000e-01   p_joint 5.230000e-02

Joint ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
Cons ci ratio: 5.369659e-02	ci left: 2.047191e-01	ci right 2.160653e-01	k: 4207	n:20000
KS ci ratio: 1.698176e-01	ci left: 2.374280e-02	ci right 2.819646e-02	k: 518	n:20000
NEO1   20000 perm   5 sec   (4127 perm/sec)   p_kst 2.590000e-02   p_cons 2.103500e-01   p_joint 5.875000e-02

Joint ci ratio: 9.115190e-02	ci left: 5.541384e-02	ci right 6.073881e-02	k: 1741	n:30000
Cons ci ratio: 4.395793e-02	ci left: 2.049066e-01	ci right 2.141497e-01	k: 6285	n:30000
KS ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
NEO1   30000 perm   8 sec   (3976 perm/sec)   p_kst 2.713333e-02   p_cons 2.095000e-01   p_joint 5.803333e-02

Joint ci ratio: 8.507585e-02	ci left: 4.825181e-02	ci right 5.256376e-02	k: 2015	n:40000
Cons ci ratio: 3.806110e-02	ci left: 2.055951e-01	ci right 2.135971e-01	k: 8383	n:40000
KS ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
NEO1   40000 perm   10 sec   (3870 perm/sec)   p_kst 2.710000e-02   p_cons 2.095750e-01   p_joint 5.037500e-02

Joint ci ratio: 8.656060e-02	ci left: 3.769197e-02	ci right 4.112176e-02	k: 1969	n:50000
Cons ci ratio: 3.408820e-02	ci left: 2.055822e-01	ci right 2.127316e-01	k: 10457	n:50000
KS ci ratio: 1.049187e-01	ci left: 2.573323e-02	ci right 2.860202e-02	k: 1357	n:50000
NEO1   50000 perm   13 sec   (3794 perm/sec)   p_kst 2.714000e-02   p_cons 2.091400e-01   p_joint 3.938000e-02

Joint ci ratio: 7.138696e-02	ci left: 4.613927e-02	ci right 4.957130e-02	k: 2870	n:60000
Cons ci ratio: 3.105807e-02	ci left: 2.065312e-01	ci right 2.130635e-01	k: 12587	n:60000
KS ci ratio: 9.579549e-02	ci left: 2.584789e-02	ci right 2.846478e-02	k: 1628	n:60000
NEO1   60000 perm   16 sec   (3729 perm/sec)   p_kst 2.713333e-02   p_cons 2.097833e-01   p_joint 4.783333e-02

Outputting figure to mutsig2_images.part000000000113/NEO1.13_4502_60000_0.027133_0.20978_0.047833.png
                gene_name: NEO1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 14 percent done.
NEBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
NEBL   10000 perm   2 sec   (4400 perm/sec)   p_kst 6.050000e-02   p_cons 2.100000e-03   p_joint 1.460000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
KS ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
NEBL   20000 perm   5 sec   (4026 perm/sec)   p_kst 5.905000e-02   p_cons 2.800000e-03   p_joint 6.300000e-03

Joint ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
Cons ci ratio: 4.102971e-01	ci left: 2.413024e-03	ci right 3.686241e-03	k: 90	n:30000
KS ci ratio: 9.411313e-02	ci left: 5.208821e-02	ci right 5.726512e-02	k: 1639	n:30000
NEBL   30000 perm   8 sec   (3885 perm/sec)   p_kst 5.463333e-02   p_cons 3.000000e-03   p_joint 4.166667e-03

Joint ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
Cons ci ratio: 3.573038e-01	ci left: 2.465140e-03	ci right 3.558989e-03	k: 119	n:40000
KS ci ratio: 8.009364e-02	ci left: 5.423260e-02	ci right 5.878205e-02	k: 2259	n:40000
NEBL   40000 perm   11 sec   (3790 perm/sec)   p_kst 5.647500e-02   p_cons 2.975000e-03   p_joint 3.800000e-03

Joint ci ratio: 2.966540e-01	ci left: 2.964317e-03	ci right 4.014632e-03	k: 173	n:50000
Cons ci ratio: 3.153926e-01	ci left: 2.594922e-03	ci right 3.584166e-03	k: 153	n:50000
KS ci ratio: 7.174582e-02	ci left: 5.431508e-02	ci right 5.837662e-02	k: 2816	n:50000
NEBL   50000 perm   13 sec   (3708 perm/sec)   p_kst 5.632000e-02   p_cons 3.060000e-03   p_joint 3.460000e-03

Joint ci ratio: 3.262717e-01	ci left: 2.009081e-03	ci right 2.806937e-03	k: 143	n:60000
Cons ci ratio: 2.933778e-01	ci left: 2.531910e-03	ci right 3.417251e-03	k: 177	n:60000
KS ci ratio: 6.542711e-02	ci left: 5.460008e-02	ci right 5.830963e-02	k: 3386	n:60000
NEBL   60000 perm   17 sec   (3636 perm/sec)   p_kst 5.643333e-02   p_cons 2.950000e-03   p_joint 2.383333e-03

Joint ci ratio: 3.218789e-01	ci left: 1.774527e-03	ci right 2.467782e-03	k: 147	n:70000
Cons ci ratio: 2.700977e-01	ci left: 2.595116e-03	ci right 3.418367e-03	k: 209	n:70000
KS ci ratio: 6.087232e-02	ci left: 5.422355e-02	ci right 5.764195e-02	k: 3914	n:70000
NEBL   70000 perm   20 sec   (3532 perm/sec)   p_kst 5.591429e-02   p_cons 2.985714e-03   p_joint 2.100000e-03

Joint ci ratio: 3.115484e-01	ci left: 1.667762e-03	ci right 2.294237e-03	k: 157	n:80000
Cons ci ratio: 2.516042e-01	ci left: 2.644610e-03	ci right 3.417128e-03	k: 241	n:80000
KS ci ratio: 5.681514e-02	ci left: 5.456461e-02	ci right 5.776767e-02	k: 4492	n:80000
NEBL   80000 perm   23 sec   (3480 perm/sec)   p_kst 5.615000e-02   p_cons 3.012500e-03   p_joint 1.962500e-03

Joint ci ratio: 3.230502e-01	ci left: 1.369927e-03	ci right 1.907459e-03	k: 146	n:90000
Cons ci ratio: 2.390940e-01	ci left: 2.621898e-03	ci right 3.344061e-03	k: 267	n:90000
KS ci ratio: 5.341836e-02	ci left: 5.494548e-02	ci right 5.797208e-02	k: 5080	n:90000
NEBL   90000 perm   26 sec   (3431 perm/sec)   p_kst 5.644444e-02   p_cons 2.966667e-03   p_joint 1.622222e-03

Joint ci ratio: 3.489995e-01	ci left: 1.040593e-03	ci right 1.489140e-03	k: 125	n:100000
Cons ci ratio: 2.222946e-01	ci left: 2.755485e-03	ci right 3.453829e-03	k: 309	n:100000
KS ci ratio: 4.946981e-02	ci left: 5.761660e-02	ci right 6.054904e-02	k: 5907	n:100000
NEBL   100000 perm   30 sec   (3385 perm/sec)   p_kst 5.907000e-02   p_cons 3.090000e-03   p_joint 1.250000e-03

Joint ci ratio: 3.576485e-01	ci left: 8.962758e-04	ci right 1.294419e-03	k: 119	n:110000
Cons ci ratio: 2.125759e-01	ci left: 2.754271e-03	ci right 3.417812e-03	k: 338	n:110000
KS ci ratio: 4.735299e-02	ci left: 5.725507e-02	ci right 6.004098e-02	k: 6450	n:110000
NEBL   110000 perm   33 sec   (3344 perm/sec)   p_kst 5.863636e-02   p_cons 3.072727e-03   p_joint 1.081818e-03

Joint ci ratio: 3.653652e-01	ci left: 7.836948e-04	ci right 1.141131e-03	k: 114	n:120000
Cons ci ratio: 2.054344e-01	ci left: 2.714276e-03	ci right 3.343455e-03	k: 362	n:120000
KS ci ratio: 4.543471e-02	ci left: 5.707974e-02	ci right 5.974165e-02	k: 7008	n:120000
NEBL   120000 perm   36 sec   (3300 perm/sec)   p_kst 5.840000e-02   p_cons 3.016667e-03   p_joint 9.500000e-04

Joint ci ratio: 3.622396e-01	ci left: 7.373854e-04	ci right 1.070143e-03	k: 116	n:130000
Cons ci ratio: 1.966864e-01	ci left: 2.746561e-03	ci right 3.352865e-03	k: 395	n:130000
KS ci ratio: 4.365863e-02	ci left: 5.711606e-02	ci right 5.967291e-02	k: 7590	n:130000
NEBL   130000 perm   40 sec   (3260 perm/sec)   p_kst 5.838462e-02   p_cons 3.038462e-03   p_joint 8.923077e-04

Joint ci ratio: 2.158617e-01	ci left: 2.096394e-03	ci right 2.610279e-03	k: 328	n:140000
Cons ci ratio: 1.885282e-01	ci left: 2.788333e-03	ci right 3.375404e-03	k: 430	n:140000
KS ci ratio: 4.162865e-02	ci left: 5.832300e-02	ci right 6.080957e-02	k: 8338	n:140000
NEBL   140000 perm   43 sec   (3220 perm/sec)   p_kst 5.955714e-02   p_cons 3.071429e-03   p_joint 2.342857e-03

Joint ci ratio: 2.264726e-01	ci left: 1.767672e-03	ci right 2.225254e-03	k: 298	n:150000
Cons ci ratio: 1.824899e-01	ci left: 2.786800e-03	ci right 3.352678e-03	k: 459	n:150000
KS ci ratio: 4.022582e-02	ci left: 5.834108e-02	ci right 6.074265e-02	k: 8930	n:150000
NEBL   150000 perm   47 sec   (3182 perm/sec)   p_kst 5.953333e-02   p_cons 3.060000e-03   p_joint 1.986667e-03

Joint ci ratio: 2.388049e-01	ci left: 1.480586e-03	ci right 1.887813e-03	k: 268	n:160000
Cons ci ratio: 1.769969e-01	ci left: 2.785721e-03	ci right 3.332532e-03	k: 488	n:160000
KS ci ratio: 3.889945e-02	ci left: 5.851915e-02	ci right 6.084683e-02	k: 9548	n:160000
NEBL   160000 perm   51 sec   (3145 perm/sec)   p_kst 5.967500e-02   p_cons 3.050000e-03   p_joint 1.675000e-03

Joint ci ratio: 2.336536e-01	ci left: 1.459901e-03	ci right 1.851526e-03	k: 280	n:170000
Cons ci ratio: 1.701689e-01	ci left: 2.846937e-03	ci right 3.381995e-03	k: 528	n:170000
KS ci ratio: 3.768829e-02	ci left: 5.870074e-02	ci right 6.096136e-02	k: 10170	n:170000
NEBL   170000 perm   55 sec   (3108 perm/sec)   p_kst 5.982353e-02   p_cons 3.105882e-03   p_joint 1.647059e-03

Joint ci ratio: 2.253807e-01	ci left: 1.488759e-03	ci right 1.872022e-03	k: 301	n:180000
Cons ci ratio: 1.633561e-01	ci left: 2.928353e-03	ci right 3.454515e-03	k: 573	n:180000
KS ci ratio: 3.657642e-02	ci left: 5.888517e-02	ci right 6.108458e-02	k: 10796	n:180000
NEBL   180000 perm   59 sec   (3073 perm/sec)   p_kst 5.997778e-02   p_cons 3.183333e-03   p_joint 1.672222e-03

Joint ci ratio: 2.210349e-01	ci left: 1.470028e-03	ci right 1.840180e-03	k: 313	n:190000
Cons ci ratio: 1.579421e-01	ci left: 2.976300e-03	ci right 3.491673e-03	k: 613	n:190000
KS ci ratio: 3.559064e-02	ci left: 5.894667e-02	ci right 6.108783e-02	k: 11402	n:190000
NEBL   190000 perm   63 sec   (3039 perm/sec)   p_kst 6.001053e-02   p_cons 3.226316e-03   p_joint 1.647368e-03

Joint ci ratio: 2.257744e-01	ci left: 1.335153e-03	ci right 1.679555e-03	k: 300	n:200000
Cons ci ratio: 1.548245e-01	ci left: 2.947590e-03	ci right 3.446981e-03	k: 638	n:200000
KS ci ratio: 3.471587e-02	ci left: 5.888868e-02	ci right 6.097410e-02	k: 11985	n:200000
NEBL   200000 perm   67 sec   (3006 perm/sec)   p_kst 5.992500e-02   p_cons 3.190000e-03   p_joint 1.500000e-03

Joint ci ratio: 2.189671e-01	ci left: 1.357014e-03	ci right 1.695080e-03	k: 319	n:210000
Cons ci ratio: 1.521144e-01	ci left: 2.912542e-03	ci right 3.396571e-03	k: 661	n:210000
KS ci ratio: 3.393562e-02	ci left: 5.872814e-02	ci right 6.076022e-02	k: 12545	n:210000
NEBL   210000 perm   71 sec   (2972 perm/sec)   p_kst 5.973810e-02   p_cons 3.147619e-03   p_joint 1.519048e-03

Joint ci ratio: 2.172813e-01	ci left: 1.316814e-03	ci right 1.642003e-03	k: 324	n:220000
Cons ci ratio: 1.488891e-01	ci left: 2.907007e-03	ci right 3.378961e-03	k: 690	n:220000
KS ci ratio: 3.312382e-02	ci left: 5.885781e-02	ci right 6.084472e-02	k: 13166	n:220000
NEBL   220000 perm   75 sec   (2938 perm/sec)   p_kst 5.984545e-02   p_cons 3.136364e-03   p_joint 1.472727e-03

Joint ci ratio: 2.140160e-01	ci left: 1.300690e-03	ci right 1.616436e-03	k: 334	n:230000
Cons ci ratio: 1.451545e-01	ci left: 2.931383e-03	ci right 3.394322e-03	k: 726	n:230000
KS ci ratio: 3.237010e-02	ci left: 5.896809e-02	ci right 6.091258e-02	k: 13785	n:230000
NEBL   230000 perm   79 sec   (2906 perm/sec)   p_kst 5.993478e-02   p_cons 3.156522e-03   p_joint 1.452174e-03

Joint ci ratio: 2.143431e-01	ci left: 1.242547e-03	ci right 1.544700e-03	k: 333	n:240000
Cons ci ratio: 1.428186e-01	ci left: 2.905636e-03	ci right 3.356495e-03	k: 750	n:240000
KS ci ratio: 3.171482e-02	ci left: 5.889595e-02	ci right 6.079803e-02	k: 14362	n:240000
NEBL   240000 perm   84 sec   (2871 perm/sec)   p_kst 5.984167e-02   p_cons 3.125000e-03   p_joint 1.387500e-03

Joint ci ratio: 2.179733e-01	ci left: 1.151221e-03	ci right 1.436542e-03	k: 322	n:250000
Cons ci ratio: 1.391582e-01	ci left: 2.943771e-03	ci right 3.387871e-03	k: 790	n:250000
KS ci ratio: 3.109446e-02	ci left: 5.884186e-02	ci right 6.070436e-02	k: 14942	n:250000
NEBL   250000 perm   88 sec   (2839 perm/sec)   p_kst 5.976800e-02   p_cons 3.160000e-03   p_joint 1.288000e-03

Joint ci ratio: 2.150001e-01	ci left: 1.139681e-03	ci right 1.417781e-03	k: 331	n:260000
Cons ci ratio: 1.352765e-01	ci left: 3.001406e-03	ci right 3.440553e-03	k: 836	n:260000
KS ci ratio: 3.043518e-02	ci left: 5.906340e-02	ci right 6.089258e-02	k: 15593	n:260000
NEBL   260000 perm   93 sec   (2809 perm/sec)   p_kst 5.997308e-02   p_cons 3.215385e-03   p_joint 1.273077e-03

Joint ci ratio: 2.163139e-01	ci left: 1.083453e-03	ci right 1.349662e-03	k: 327	n:270000
Cons ci ratio: 1.288074e-01	ci left: 3.198265e-03	ci right 3.642129e-03	k: 922	n:270000
KS ci ratio: 2.985230e-02	ci left: 5.913283e-02	ci right 6.092848e-02	k: 16207	n:270000
NEBL   270000 perm   97 sec   (2779 perm/sec)   p_kst 6.002593e-02   p_cons 3.414815e-03   p_joint 1.211111e-03

Joint ci ratio: 2.115300e-01	ci left: 1.095461e-03	ci right 1.357896e-03	k: 342	n:280000
Cons ci ratio: 1.261683e-01	ci left: 3.218887e-03	ci right 3.655776e-03	k: 961	n:280000
KS ci ratio: 2.932765e-02	ci left: 5.909830e-02	ci right 6.086083e-02	k: 16793	n:280000
NEBL   280000 perm   102 sec   (2749 perm/sec)   p_kst 5.997500e-02   p_cons 3.432143e-03   p_joint 1.221429e-03

Joint ci ratio: 2.079243e-01	ci left: 1.096892e-03	ci right 1.354621e-03	k: 354	n:290000
Cons ci ratio: 1.246256e-01	ci left: 3.188051e-03	ci right 3.615072e-03	k: 985	n:290000
KS ci ratio: 2.878658e-02	ci left: 5.923423e-02	ci right 6.096768e-02	k: 17428	n:290000
NEBL   290000 perm   107 sec   (2721 perm/sec)   p_kst 6.009655e-02   p_cons 3.396552e-03   p_joint 1.220690e-03

Joint ci ratio: 2.088137e-01	ci left: 1.050848e-03	ci right 1.298949e-03	k: 351	n:300000
Cons ci ratio: 1.225912e-01	ci left: 3.188381e-03	ci right 3.607969e-03	k: 1018	n:300000
KS ci ratio: 2.829939e-02	ci left: 5.926204e-02	ci right 6.096647e-02	k: 18033	n:300000
NEBL   300000 perm   111 sec   (2694 perm/sec)   p_kst 6.011000e-02   p_cons 3.393333e-03   p_joint 1.170000e-03

Joint ci ratio: 1.526550e-01	ci left: 1.960527e-03	ci right 2.287602e-03	k: 657	n:310000
Cons ci ratio: 1.205384e-01	ci left: 3.195001e-03	ci right 3.607917e-03	k: 1053	n:310000
KS ci ratio: 2.781233e-02	ci left: 5.938443e-02	ci right 6.106252e-02	k: 18668	n:310000
NEBL   310000 perm   116 sec   (2667 perm/sec)   p_kst 6.021935e-02   p_cons 3.396774e-03   p_joint 2.119355e-03

Joint ci ratio: 1.524281e-01	ci left: 1.905268e-03	ci right 2.222608e-03	k: 659	n:320000
Cons ci ratio: 1.191909e-01	ci left: 3.167905e-03	ci right 3.572421e-03	k: 1077	n:320000
KS ci ratio: 2.735486e-02	ci left: 5.947766e-02	ci right 6.113031e-02	k: 19296	n:320000
NEBL   320000 perm   121 sec   (2641 perm/sec)   p_kst 6.030000e-02   p_cons 3.365625e-03   p_joint 2.059375e-03

Joint ci ratio: 1.509505e-01	ci left: 1.885429e-03	ci right 2.196146e-03	k: 672	n:330000
Cons ci ratio: 1.171434e-01	ci left: 3.183658e-03	ci right 3.582718e-03	k: 1115	n:330000
KS ci ratio: 2.693219e-02	ci left: 5.951126e-02	ci right 6.113889e-02	k: 19906	n:330000
NEBL   330000 perm   126 sec   (2616 perm/sec)   p_kst 6.032121e-02   p_cons 3.378788e-03   p_joint 2.036364e-03

Joint ci ratio: 1.500640e-01	ci left: 1.852616e-03	ci right 2.155972e-03	k: 680	n:340000
Cons ci ratio: 1.160076e-01	ci left: 3.152837e-03	ci right 3.543939e-03	k: 1137	n:340000
KS ci ratio: 2.652714e-02	ci left: 5.954891e-02	ci right 6.115271e-02	k: 20518	n:340000
NEBL   340000 perm   131 sec   (2591 perm/sec)   p_kst 6.034706e-02   p_cons 3.344118e-03   p_joint 2.000000e-03

Joint ci ratio: 1.483325e-01	ci left: 1.843692e-03	ci right 2.141793e-03	k: 696	n:350000
Cons ci ratio: 1.141172e-01	ci left: 3.168204e-03	ci right 3.554377e-03	k: 1175	n:350000
KS ci ratio: 2.615895e-02	ci left: 5.950224e-02	ci right 6.108220e-02	k: 21101	n:350000
NEBL   350000 perm   136 sec   (2567 perm/sec)   p_kst 6.028857e-02   p_cons 3.357143e-03   p_joint 1.988571e-03

Joint ci ratio: 1.668695e-01	ci left: 1.402833e-03	ci right 1.660852e-03	k: 550	n:360000
Cons ci ratio: 1.124092e-01	ci left: 3.177366e-03	ci right 3.558475e-03	k: 1211	n:360000
KS ci ratio: 2.575579e-02	ci left: 5.967642e-02	ci right 6.123622e-02	k: 21763	n:360000
NEBL   360000 perm   142 sec   (2543 perm/sec)   p_kst 6.045278e-02   p_cons 3.363889e-03   p_joint 1.527778e-03

Joint ci ratio: 1.671771e-01	ci left: 1.359737e-03	ci right 1.610337e-03	k: 548	n:370000
Cons ci ratio: 1.105537e-01	ci left: 3.199214e-03	ci right 3.576197e-03	k: 1252	n:370000
KS ci ratio: 2.542142e-02	ci left: 5.961568e-02	ci right 6.115337e-02	k: 22341	n:370000
NEBL   370000 perm   147 sec   (2519 perm/sec)   p_kst 6.038108e-02   p_cons 3.383784e-03   p_joint 1.481081e-03

Joint ci ratio: 1.643564e-01	ci left: 1.371881e-03	ci right 1.620031e-03	k: 567	n:380000
Cons ci ratio: 1.092541e-01	ci left: 3.191801e-03	ci right 3.563204e-03	k: 1282	n:380000
KS ci ratio: 2.507239e-02	ci left: 5.968123e-02	ci right 6.119917e-02	k: 22966	n:380000
NEBL   380000 perm   152 sec   (2495 perm/sec)   p_kst 6.043684e-02   p_cons 3.373684e-03   p_joint 1.492105e-03

Joint ci ratio: 1.626479e-01	ci left: 1.366214e-03	ci right 1.610519e-03	k: 579	n:390000
Cons ci ratio: 1.079993e-01	ci left: 3.184792e-03	ci right 3.550853e-03	k: 1312	n:390000
KS ci ratio: 2.476699e-02	ci left: 5.960844e-02	ci right 6.110580e-02	k: 23538	n:390000
NEBL   390000 perm   158 sec   (2473 perm/sec)   p_kst 6.035385e-02   p_cons 3.364103e-03   p_joint 1.484615e-03

Joint ci ratio: 1.608555e-01	ci left: 1.363243e-03	ci right 1.604071e-03	k: 592	n:400000
Cons ci ratio: 1.070269e-01	ci left: 3.163557e-03	ci right 3.523697e-03	k: 1336	n:400000
KS ci ratio: 2.445413e-02	ci left: 5.962391e-02	ci right 6.110247e-02	k: 24144	n:400000
NEBL   400000 perm   163 sec   (2451 perm/sec)   p_kst 6.036000e-02   p_cons 3.340000e-03   p_joint 1.480000e-03

Joint ci ratio: 1.604525e-01	ci left: 1.337015e-03	ci right 1.572560e-03	k: 595	n:410000
Cons ci ratio: 1.059242e-01	ci left: 3.152870e-03	ci right 3.507865e-03	k: 1364	n:410000
KS ci ratio: 2.414297e-02	ci left: 5.968482e-02	ci right 6.114579e-02	k: 24769	n:410000
NEBL   410000 perm   169 sec   (2428 perm/sec)   p_kst 6.041220e-02   p_cons 3.326829e-03   p_joint 1.451220e-03

Joint ci ratio: 1.596525e-01	ci left: 1.318894e-03	ci right 1.549977e-03	k: 601	n:420000
Cons ci ratio: 1.047418e-01	ci left: 3.149667e-03	ci right 3.500098e-03	k: 1395	n:420000
KS ci ratio: 2.387744e-02	ci left: 5.958194e-02	ci right 6.102414e-02	k: 25326	n:420000
NEBL   420000 perm   175 sec   (2406 perm/sec)   p_kst 6.030000e-02   p_cons 3.321429e-03   p_joint 1.430952e-03

Joint ci ratio: 1.575720e-01	ci left: 1.323954e-03	ci right 1.552616e-03	k: 617	n:430000
Cons ci ratio: 1.036345e-01	ci left: 3.144367e-03	ci right 3.490286e-03	k: 1425	n:430000
KS ci ratio: 2.361078e-02	ci left: 5.953018e-02	ci right 6.095482e-02	k: 25903	n:430000
NEBL   430000 perm   180 sec   (2386 perm/sec)   p_kst 6.023953e-02   p_cons 3.313953e-03   p_joint 1.434884e-03

Joint ci ratio: 1.558170e-01	ci left: 1.324435e-03	ci right 1.550394e-03	k: 631	n:440000
Cons ci ratio: 1.024911e-01	ci left: 3.143757e-03	ci right 3.485562e-03	k: 1457	n:440000
KS ci ratio: 2.332521e-02	ci left: 5.961423e-02	ci right 6.102339e-02	k: 26539	n:440000
NEBL   440000 perm   186 sec   (2364 perm/sec)   p_kst 6.031591e-02   p_cons 3.311364e-03   p_joint 1.434091e-03

Joint ci ratio: 1.559431e-01	ci left: 1.292866e-03	ci right 1.513634e-03	k: 630	n:450000
Cons ci ratio: 1.015901e-01	ci left: 3.130198e-03	ci right 3.467359e-03	k: 1483	n:450000
KS ci ratio: 2.306286e-02	ci left: 5.963054e-02	ci right 6.102402e-02	k: 27146	n:450000
NEBL   450000 perm   192 sec   (2345 perm/sec)   p_kst 6.032444e-02   p_cons 3.295556e-03   p_joint 1.400000e-03

Joint ci ratio: 1.228453e-01	ci left: 2.072984e-03	ci right 2.346390e-03	k: 1015	n:460000
Cons ci ratio: 1.005789e-01	ci left: 3.125718e-03	ci right 3.458847e-03	k: 1513	n:460000
KS ci ratio: 2.371105e-02	ci left: 5.541943e-02	ci right 5.675139e-02	k: 25798	n:460000
NEBL   460000 perm   198 sec   (2326 perm/sec)   p_kst 5.608261e-02   p_cons 3.289130e-03   p_joint 2.206522e-03

Joint ci ratio: 1.262563e-01	ci left: 1.917554e-03	ci right 2.178008e-03	k: 961	n:470000
Cons ci ratio: 9.943586e-02	ci left: 3.131820e-03	ci right 3.461584e-03	k: 1548	n:470000
KS ci ratio: 2.345737e-02	ci left: 5.542687e-02	ci right 5.674457e-02	k: 26359	n:470000
NEBL   470000 perm   204 sec   (2308 perm/sec)   p_kst 5.608298e-02   p_cons 3.293617e-03   p_joint 2.044681e-03

Joint ci ratio: 1.282101e-01	ci left: 1.819105e-03	ci right 2.070301e-03	k: 932	n:480000
Cons ci ratio: 9.829983e-02	ci left: 3.139719e-03	ci right 3.466321e-03	k: 1584	n:480000
KS ci ratio: 2.319935e-02	ci left: 5.549002e-02	ci right 5.679451e-02	k: 26947	n:480000
NEBL   480000 perm   210 sec   (2290 perm/sec)   p_kst 5.613958e-02   p_cons 3.300000e-03   p_joint 1.941667e-03

Joint ci ratio: 1.273270e-01	ci left: 1.807662e-03	ci right 2.055429e-03	k: 945	n:490000
Cons ci ratio: 9.729223e-02	ci left: 3.141343e-03	ci right 3.464574e-03	k: 1617	n:490000
KS ci ratio: 2.297752e-02	ci left: 5.542279e-02	ci right 5.671308e-02	k: 27472	n:490000
NEBL   490000 perm   216 sec   (2272 perm/sec)   p_kst 5.606531e-02   p_cons 3.300000e-03   p_joint 1.928571e-03

Joint ci ratio: 1.282151e-01	ci left: 1.746336e-03	ci right 1.987494e-03	k: 932	n:500000
Cons ci ratio: 9.646165e-02	ci left: 3.133159e-03	ci right 3.452639e-03	k: 1645	n:500000
KS ci ratio: 2.273656e-02	ci left: 5.547568e-02	ci right 5.675347e-02	k: 28056	n:500000
NEBL   500000 perm   222 sec   (2254 perm/sec)   p_kst 5.611200e-02   p_cons 3.290000e-03   p_joint 1.864000e-03

Joint ci ratio: 1.270630e-01	ci left: 1.744363e-03	ci right 1.982921e-03	k: 949	n:510000
Cons ci ratio: 9.565199e-02	ci left: 3.125307e-03	ci right 3.441162e-03	k: 1673	n:510000
KS ci ratio: 2.250095e-02	ci left: 5.553631e-02	ci right 5.680207e-02	k: 28645	n:510000
NEBL   510000 perm   228 sec   (2237 perm/sec)   p_kst 5.616667e-02   p_cons 3.280392e-03   p_joint 1.860784e-03

Joint ci ratio: 1.262031e-01	ci left: 1.735025e-03	ci right 1.970580e-03	k: 962	n:520000
Cons ci ratio: 9.480650e-02	ci left: 3.121523e-03	ci right 3.434052e-03	k: 1703	n:520000
KS ci ratio: 2.226646e-02	ci left: 5.562337e-02	ci right 5.687774e-02	k: 29249	n:520000
NEBL   520000 perm   234 sec   (2221 perm/sec)   p_kst 5.624808e-02   p_cons 3.275000e-03   p_joint 1.850000e-03

Joint ci ratio: 1.254248e-01	ci left: 1.724217e-03	ci right 1.956754e-03	k: 974	n:530000
Cons ci ratio: 9.406472e-02	ci left: 3.112366e-03	ci right 3.421405e-03	k: 1730	n:530000
KS ci ratio: 2.205834e-02	ci left: 5.561523e-02	ci right 5.685755e-02	k: 29804	n:530000
NEBL   530000 perm   241 sec   (2203 perm/sec)   p_kst 5.623396e-02   p_cons 3.264151e-03   p_joint 1.837736e-03

Joint ci ratio: 1.242202e-01	ci left: 1.726374e-03	ci right 1.956801e-03	k: 993	n:540000
Cons ci ratio: 9.318068e-02	ci left: 3.114410e-03	ci right 3.420588e-03	k: 1763	n:540000
KS ci ratio: 2.185557e-02	ci left: 5.560929e-02	ci right 5.683992e-02	k: 30360	n:540000
NEBL   540000 perm   248 sec   (2182 perm/sec)   p_kst 5.622222e-02   p_cons 3.264815e-03   p_joint 1.838889e-03

Joint ci ratio: 1.234779e-01	ci left: 1.716127e-03	ci right 1.943717e-03	k: 1005	n:550000
Cons ci ratio: 9.232111e-02	ci left: 3.116393e-03	ci right 3.419786e-03	k: 1796	n:550000
KS ci ratio: 2.165940e-02	ci left: 5.559820e-02	ci right 5.681739e-02	k: 30913	n:550000
NEBL   550000 perm   254 sec   (2165 perm/sec)   p_kst 5.620545e-02   p_cons 3.265455e-03   p_joint 1.827273e-03

Joint ci ratio: 1.228091e-01	ci left: 1.704519e-03	ci right 1.929256e-03	k: 1016	n:560000
Cons ci ratio: 9.133479e-02	ci left: 3.128787e-03	ci right 3.429959e-03	k: 1835	n:560000
KS ci ratio: 2.146228e-02	ci left: 5.561775e-02	ci right 5.682614e-02	k: 31483	n:560000
NEBL   560000 perm   261 sec   (2149 perm/sec)   p_kst 5.621964e-02   p_cons 3.276786e-03   p_joint 1.814286e-03

Joint ci ratio: 1.218545e-01	ci left: 1.701826e-03	ci right 1.924339e-03	k: 1032	n:570000
Cons ci ratio: 9.062220e-02	ci left: 3.123615e-03	ci right 3.421820e-03	k: 1864	n:570000
KS ci ratio: 2.127572e-02	ci left: 5.561048e-02	ci right 5.680808e-02	k: 32038	n:570000
NEBL   570000 perm   268 sec   (2131 perm/sec)   p_kst 5.620702e-02   p_cons 3.270175e-03   p_joint 1.810526e-03

Joint ci ratio: 1.208066e-01	ci left: 1.702577e-03	ci right 1.923136e-03	k: 1050	n:580000
Cons ci ratio: 8.968880e-02	ci left: 3.135486e-03	ci right 3.431579e-03	k: 1903	n:580000
KS ci ratio: 2.110046e-02	ci left: 5.557090e-02	ci right 5.675767e-02	k: 32574	n:580000
NEBL   580000 perm   274 sec   (2115 perm/sec)   p_kst 5.616207e-02   p_cons 3.281034e-03   p_joint 1.810345e-03

Joint ci ratio: 1.197291e-01	ci left: 1.704955e-03	ci right 1.923712e-03	k: 1069	n:590000
Cons ci ratio: 8.880658e-02	ci left: 3.145312e-03	ci right 3.439260e-03	k: 1941	n:590000
KS ci ratio: 2.093113e-02	ci left: 5.552428e-02	ci right 5.670042e-02	k: 33105	n:590000
NEBL   590000 perm   281 sec   (2100 perm/sec)   p_kst 5.611017e-02   p_cons 3.289831e-03   p_joint 1.811864e-03

Joint ci ratio: 1.196749e-01	ci left: 1.678154e-03	ci right 1.893369e-03	k: 1070	n:600000
Cons ci ratio: 8.808390e-02	ci left: 3.145044e-03	ci right 3.436451e-03	k: 1973	n:600000
KS ci ratio: 2.075372e-02	ci left: 5.554061e-02	ci right 5.670701e-02	k: 33673	n:600000
NEBL   600000 perm   288 sec   (2085 perm/sec)   p_kst 5.612167e-02   p_cons 3.288333e-03   p_joint 1.783333e-03

Joint ci ratio: 1.223372e-01	ci left: 1.577511e-03	ci right 1.784645e-03	k: 1024	n:610000
Cons ci ratio: 8.726953e-02	ci left: 3.152812e-03	ci right 3.442101e-03	k: 2010	n:610000
KS ci ratio: 2.058744e-02	ci left: 5.552219e-02	ci right 5.667875e-02	k: 34220	n:610000
NEBL   610000 perm   295 sec   (2070 perm/sec)   p_kst 5.609836e-02   p_cons 3.295082e-03   p_joint 1.678689e-03

Joint ci ratio: 1.218044e-01	ci left: 1.566139e-03	ci right 1.770820e-03	k: 1033	n:620000
Cons ci ratio: 8.654095e-02	ci left: 3.155607e-03	ci right 3.442613e-03	k: 2044	n:620000
KS ci ratio: 2.041856e-02	ci left: 5.553811e-02	ci right 5.668540e-02	k: 34788	n:620000
NEBL   620000 perm   302 sec   (2055 perm/sec)   p_kst 5.610968e-02   p_cons 3.296774e-03   p_joint 1.666129e-03

Joint ci ratio: 1.213368e-01	ci left: 1.553592e-03	ci right 1.755797e-03	k: 1041	n:630000
Cons ci ratio: 8.595485e-02	ci left: 3.149004e-03	ci right 3.433372e-03	k: 2072	n:630000
KS ci ratio: 2.026623e-02	ci left: 5.548879e-02	ci right 5.662641e-02	k: 35315	n:630000
NEBL   630000 perm   309 sec   (2040 perm/sec)   p_kst 5.605556e-02   p_cons 3.288889e-03   p_joint 1.652381e-03

Joint ci ratio: 1.217486e-01	ci left: 1.518710e-03	ci right 1.717095e-03	k: 1034	n:640000
Cons ci ratio: 8.529907e-02	ci left: 3.148730e-03	ci right 3.430796e-03	k: 2104	n:640000
KS ci ratio: 2.009321e-02	ci left: 5.556701e-02	ci right 5.669639e-02	k: 35923	n:640000
NEBL   640000 perm   316 sec   (2023 perm/sec)   p_kst 5.612969e-02   p_cons 3.287500e-03   p_joint 1.615625e-03

Joint ci ratio: 1.222242e-01	ci left: 1.483412e-03	ci right 1.677997e-03	k: 1026	n:650000
Cons ci ratio: 8.475761e-02	ci left: 3.140943e-03	ci right 3.420437e-03	k: 2131	n:650000
KS ci ratio: 1.993350e-02	ci left: 5.559539e-02	ci right 5.671627e-02	k: 36500	n:650000
NEBL   650000 perm   324 sec   (2008 perm/sec)   p_kst 5.615385e-02   p_cons 3.278462e-03   p_joint 1.578462e-03

Joint ci ratio: 1.212249e-01	ci left: 1.485909e-03	ci right 1.679114e-03	k: 1043	n:660000
Cons ci ratio: 8.391495e-02	ci left: 3.157131e-03	ci right 3.435136e-03	k: 2174	n:660000
KS ci ratio: 1.978773e-02	ci left: 5.556865e-02	ci right 5.668070e-02	k: 37041	n:660000
NEBL   660000 perm   331 sec   (1993 perm/sec)   p_kst 5.612273e-02   p_cons 3.293939e-03   p_joint 1.580303e-03

Joint ci ratio: 1.203065e-01	ci left: 1.486891e-03	ci right 1.678654e-03	k: 1059	n:670000
Cons ci ratio: 8.320992e-02	ci left: 3.164080e-03	ci right 3.440242e-03	k: 2211	n:670000
KS ci ratio: 1.963764e-02	ci left: 5.558285e-02	ci right 5.668666e-02	k: 37609	n:670000
NEBL   670000 perm   339 sec   (1978 perm/sec)   p_kst 5.613284e-02   p_cons 3.300000e-03   p_joint 1.580597e-03

Joint ci ratio: 1.196875e-01	ci left: 1.480715e-03	ci right 1.670630e-03	k: 1070	n:680000
Cons ci ratio: 8.268853e-02	ci left: 3.157871e-03	ci right 3.431681e-03	k: 2239	n:680000
KS ci ratio: 1.949307e-02	ci left: 5.558496e-02	ci right 5.668059e-02	k: 38169	n:680000
NEBL   680000 perm   346 sec   (1964 perm/sec)   p_kst 5.613088e-02   p_cons 3.292647e-03   p_joint 1.573529e-03

Joint ci ratio: 1.186395e-01	ci left: 1.485971e-03	ci right 1.674775e-03	k: 1089	n:690000
Cons ci ratio: 8.203179e-02	ci left: 3.163205e-03	ci right 3.435195e-03	k: 2275	n:690000
KS ci ratio: 1.935324e-02	ci left: 5.557838e-02	ci right 5.666593e-02	k: 38723	n:690000
NEBL   690000 perm   354 sec   (1950 perm/sec)   p_kst 5.612029e-02   p_cons 3.297101e-03   p_joint 1.578261e-03

Joint ci ratio: 1.106423e-01	ci left: 1.690941e-03	ci right 1.890362e-03	k: 1252	n:700000
Cons ci ratio: 8.154986e-02	ci left: 3.155798e-03	ci right 3.425481e-03	k: 2302	n:700000
KS ci ratio: 1.921663e-02	ci left: 5.557059e-02	ci right 5.665023e-02	k: 39276	n:700000
NEBL   700000 perm   362 sec   (1936 perm/sec)   p_kst 5.610857e-02   p_cons 3.288571e-03   p_joint 1.788571e-03

Joint ci ratio: 1.127360e-01	ci left: 1.604141e-03	ci right 1.797144e-03	k: 1206	n:710000
Cons ci ratio: 8.102400e-02	ci left: 3.152745e-03	ci right 3.420347e-03	k: 2332	n:710000
KS ci ratio: 1.907958e-02	ci left: 5.558127e-02	ci right 5.665334e-02	k: 39842	n:710000
NEBL   710000 perm   369 sec   (1922 perm/sec)   p_kst 5.611549e-02   p_cons 3.284507e-03   p_joint 1.698592e-03

Joint ci ratio: 1.114499e-01	ci left: 1.619661e-03	ci right 1.812161e-03	k: 1234	n:720000
Cons ci ratio: 8.057664e-02	ci left: 3.144337e-03	ci right 3.409684e-03	k: 2358	n:720000
KS ci ratio: 1.894691e-02	ci left: 5.558339e-02	ci right 5.664796e-02	k: 40402	n:720000
NEBL   720000 perm   377 sec   (1909 perm/sec)   p_kst 5.611389e-02   p_cons 3.275000e-03   p_joint 1.713889e-03

Joint ci ratio: 1.102067e-01	ci left: 1.634767e-03	ci right 1.826755e-03	k: 1262	n:730000
Cons ci ratio: 7.995184e-02	ci left: 3.150932e-03	ci right 3.414677e-03	k: 2395	n:730000
KS ci ratio: 1.880749e-02	ci left: 5.563866e-02	ci right 5.669637e-02	k: 41001	n:730000
NEBL   730000 perm   385 sec   (1896 perm/sec)   p_kst 5.616575e-02   p_cons 3.280822e-03   p_joint 1.728767e-03

Joint ci ratio: 1.109586e-01	ci left: 1.590336e-03	ci right 1.778464e-03	k: 1245	n:740000
Cons ci ratio: 7.943969e-02	ci left: 3.149409e-03	ci right 3.411260e-03	k: 2426	n:740000
KS ci ratio: 1.867681e-02	ci left: 5.566018e-02	ci right 5.671086e-02	k: 41576	n:740000
NEBL   740000 perm   393 sec   (1884 perm/sec)   p_kst 5.618378e-02   p_cons 3.278378e-03   p_joint 1.682432e-03

Joint ci ratio: 9.513450e-02	ci left: 2.151188e-03	ci right 2.367352e-03	k: 1693	n:750000
Cons ci ratio: 7.909885e-02	ci left: 3.134861e-03	ci right 3.394332e-03	k: 2447	n:750000
KS ci ratio: 1.855651e-02	ci left: 5.563734e-02	ci right 5.668076e-02	k: 42118	n:750000
NEBL   750000 perm   401 sec   (1871 perm/sec)   p_kst 5.615733e-02   p_cons 3.262667e-03   p_joint 2.257333e-03

Outputting figure to mutsig2_images.part000000000113/NEBL.11_3530_750000_0.056157_0.0032627_0.0022573.png
                gene_name: NEBL
               theta_stop: 0.095 
                    nperm: 750000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.0033 
      ci_cons_bounds_left: 0.0031 
     ci_cons_bounds_right: 0.0034 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0024 

Current progress: 16 percent done.
NEDD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
Cons ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
KS ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
NEDD4   10000 perm   2 sec   (4787 perm/sec)   p_kst 7.250000e-02   p_cons 6.285000e-01   p_joint 2.236000e-01

Joint ci ratio: 5.489662e-02	ci left: 1.975429e-01	ci right 2.087436e-01	k: 4062	n:20000
Cons ci ratio: 2.131198e-02	ci left: 6.217098e-01	ci right 6.351529e-01	k: 12569	n:20000
KS ci ratio: 9.848272e-02	ci left: 6.977402e-02	ci right 7.705059e-02	k: 1467	n:20000
NEDD4   20000 perm   5 sec   (4356 perm/sec)   p_kst 7.335000e-02   p_cons 6.284500e-01   p_joint 2.031000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD4.10_4371_20000_0.07335_0.62845_0.2031.png
                gene_name: NEDD4
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 18 percent done.
NES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
NES   10000 perm   2 sec   (4479 perm/sec)   p_kst 8.960000e-02   p_cons 9.504000e-01   p_joint 1.953000e-01

Joint ci ratio: 6.361681e-02	ci left: 1.544504e-01	ci right 1.646488e-01	k: 3190	n:20000
Cons ci ratio: 6.364958e-03	ci left: 9.468370e-01	ci right 9.529313e-01	k: 18999	n:20000
KS ci ratio: 8.585087e-02	ci left: 9.033297e-02	ci right 9.848539e-02	k: 1887	n:20000
NES   20000 perm   5 sec   (4096 perm/sec)   p_kst 9.435000e-02   p_cons 9.499500e-01   p_joint 1.595000e-01

Outputting figure to mutsig2_images.part000000000113/NES.10_4882_20000_0.09435_0.94995_0.1595.png
                gene_name: NES
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 20 percent done.
NDST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
NDST3   10000 perm   2 sec   (5373 perm/sec)   p_kst 8.250000e-02   p_cons 1.820000e-01   p_joint 1.105000e-01

Joint ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
Cons ci ratio: 5.881266e-02	ci left: 1.763775e-01	ci right 1.871151e-01	k: 3634	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
NDST3   20000 perm   4 sec   (4846 perm/sec)   p_kst 8.875000e-02   p_cons 1.817000e-01   p_joint 1.049500e-01

Outputting figure to mutsig2_images.part000000000113/NDST3.8_2674_20000_0.08875_0.1817_0.10495.png
                gene_name: NDST3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 23 percent done.
NEK10
Processing conservation and coverage...
Processing mutations... 
Skipping 5 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KS ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
NEK10   10000 perm   2 sec   (6399 perm/sec)   p_kst 1.134000e-01   p_cons 2.322000e-01   p_joint 1.155000e-01

Joint ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
Cons ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
KS ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
NEK10   20000 perm   4 sec   (5670 perm/sec)   p_kst 1.118000e-01   p_cons 2.283000e-01   p_joint 9.845000e-02

Outputting figure to mutsig2_images.part000000000113/NEK10.3_2231_20000_0.1118_0.2283_0.09845.png
                gene_name: NEK10
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 25 percent done.
NDST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
NDST2   10000 perm   2 sec   (5701 perm/sec)   p_kst 5.830000e-02   p_cons 7.740000e-01   p_joint 1.394000e-01

Joint ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
Cons ci ratio: 1.540991e-02	ci left: 7.579512e-01	ci right 7.697720e-01	k: 15278	n:20000
KS ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
NDST2   20000 perm   4 sec   (5109 perm/sec)   p_kst 5.680000e-02   p_cons 7.639000e-01   p_joint 1.504000e-01

Joint ci ratio: 5.820489e-02	ci left: 1.274975e-01	ci right 1.351741e-01	k: 3939	n:30000
Cons ci ratio: 1.265654e-02	ci left: 7.569042e-01	ci right 7.665784e-01	k: 22853	n:30000
KS ci ratio: 9.151498e-02	ci left: 5.498984e-02	ci right 6.029623e-02	k: 1728	n:30000
NDST2   30000 perm   6 sec   (4881 perm/sec)   p_kst 5.760000e-02   p_cons 7.617667e-01   p_joint 1.313000e-01

Outputting figure to mutsig2_images.part000000000113/NDST2.7_2704_30000_0.0576_0.76177_0.1313.png
                gene_name: NDST2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 27 percent done.
NDUFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
NDUFS1   10000 perm   2 sec   (4815 perm/sec)   p_kst 3.786000e-01   p_cons 2.302000e-01   p_joint 3.961000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS1.7_2256_10000_0.3786_0.2302_0.3961.png
                gene_name: NDUFS1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 30 percent done.
NEIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
Cons ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
KS ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
NEIL3   10000 perm   2 sec   (5731 perm/sec)   p_kst 1.213000e-01   p_cons 2.009000e-01   p_joint 2.510000e-01

Joint ci ratio: 5.978982e-02	ci left: 1.715845e-01	ci right 1.822097e-01	k: 3537	n:20000
Cons ci ratio: 5.536728e-02	ci left: 1.948216e-01	ci right 2.059656e-01	k: 4007	n:20000
KS ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
NEIL3   20000 perm   4 sec   (5154 perm/sec)   p_kst 1.234000e-01   p_cons 2.003500e-01   p_joint 1.768500e-01

Outputting figure to mutsig2_images.part000000000113/NEIL3.7_1858_20000_0.1234_0.20035_0.17685.png
                gene_name: NEIL3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 32 percent done.
NEK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
NEK11   10000 perm   2 sec   (5106 perm/sec)   p_kst 2.850000e-01   p_cons 3.049000e-01   p_joint 4.375000e-01

Outputting figure to mutsig2_images.part000000000113/NEK11.7_2020_10000_0.285_0.3049_0.4375.png
                gene_name: NEK11
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 34 percent done.
NDUFS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
NDUFS2   10000 perm   2 sec   (5679 perm/sec)   p_kst 6.320000e-02   p_cons 1.380000e-01   p_joint 1.285000e-01

Joint ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
Cons ci ratio: 6.998277e-02	ci left: 1.308341e-01	ci right 1.403721e-01	k: 2711	n:20000
KS ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
NDUFS2   20000 perm   4 sec   (5083 perm/sec)   p_kst 6.350000e-02   p_cons 1.355500e-01   p_joint 4.780000e-02

Joint ci ratio: 1.024063e-01	ci left: 4.417714e-02	ci right 4.897783e-02	k: 1396	n:30000
Cons ci ratio: 5.690659e-02	ci left: 1.326666e-01	ci right 1.404705e-01	k: 4096	n:30000
KS ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
NDUFS2   30000 perm   6 sec   (4880 perm/sec)   p_kst 6.376667e-02   p_cons 1.365333e-01   p_joint 4.653333e-02

Joint ci ratio: 7.929718e-02	ci left: 5.528740e-02	ci right 5.987709e-02	k: 2302	n:40000
Cons ci ratio: 4.923399e-02	ci left: 1.334216e-01	ci right 1.401812e-01	k: 5471	n:40000
KS ci ratio: 7.476773e-02	ci left: 6.189087e-02	ci right 6.672262e-02	k: 2571	n:40000
NDUFS2   40000 perm   8 sec   (4741 perm/sec)   p_kst 6.427500e-02   p_cons 1.367750e-01   p_joint 5.755000e-02

Outputting figure to mutsig2_images.part000000000113/NDUFS2.6_1468_40000_0.064275_0.13678_0.05755.png
                gene_name: NDUFS2
               theta_stop: 0.079 
                    nperm: 40000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 36 percent done.
NEDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
Cons ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
KS ci ratio: 8.673692e-02	ci left: 1.621934e-01	ci right 1.769996e-01	k: 1695	n:10000
NEDD1   10000 perm   2 sec   (5413 perm/sec)   p_kst 1.695000e-01   p_cons 2.336000e-01   p_joint 2.336000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD1.6_2064_10000_0.1695_0.2336_0.2336.png
                gene_name: NEDD1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 39 percent done.
NEFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
Cons ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
KS ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
NEFL   10000 perm   2 sec   (5850 perm/sec)   p_kst 1.954000e-01   p_cons 6.240000e-01   p_joint 2.779000e-01

Outputting figure to mutsig2_images.part000000000113/NEFL.6_1649_10000_0.1954_0.624_0.2779.png
                gene_name: NEFL
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 41 percent done.
NEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
NEK1   10000 perm   2 sec   (4996 perm/sec)   p_kst 3.404000e-01   p_cons 3.169000e-01   p_joint 3.952000e-01

Outputting figure to mutsig2_images.part000000000113/NEK1.6_3909_10000_0.3404_0.3169_0.3952.png
                gene_name: NEK1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
NDUFA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
Cons ci ratio: 1.316798e-01	ci left: 7.601602e-02	ci right 8.682930e-02	k: 813	n:10000
KS ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
NDUFA9   10000 perm   2 sec   (5849 perm/sec)   p_kst 4.797000e-01   p_cons 8.130000e-02   p_joint 2.135000e-01

Joint ci ratio: 4.613875e-02	ci left: 2.590419e-01	ci right 2.713264e-01	k: 5303	n:20000
Cons ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
KS ci ratio: 2.873858e-02	ci left: 4.749531e-01	ci right 4.888522e-01	k: 9638	n:20000
NDUFA9   20000 perm   4 sec   (5248 perm/sec)   p_kst 4.819000e-01   p_cons 8.815000e-02   p_joint 2.651500e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA9.5_1178_20000_0.4819_0.08815_0.26515.png
                gene_name: NDUFA9
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 45 percent done.
NEFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558798e-02	ci left: 8.566152e-01	ci right 8.701724e-01	k: 8635	n:10000
Cons ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
KS ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
NEFM   10000 perm   2 sec   (5101 perm/sec)   p_kst 7.374000e-01   p_cons 9.823000e-01   p_joint 8.635000e-01

Outputting figure to mutsig2_images.part000000000113/NEFM.5_2763_10000_0.7374_0.9823_0.8635.png
                gene_name: NEFM
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 48 percent done.
NEGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
Cons ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
KS ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
NEGR1   10000 perm   2 sec   (6059 perm/sec)   p_kst 6.000000e-01   p_cons 4.033000e-01   p_joint 6.821000e-01

Outputting figure to mutsig2_images.part000000000113/NEGR1.5_1093_10000_0.6_0.4033_0.6821.png
                gene_name: NEGR1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 50 percent done.
NDUFA13
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 52 percent done.
NDUFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
Cons ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
KS ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
NDUFB2   10000 perm   2 sec   (6592 perm/sec)   p_kst 1.174000e-01   p_cons 3.915000e-01   p_joint 1.587000e-01

Joint ci ratio: 6.647843e-02	ci left: 1.431544e-01	ci right 1.530482e-01	k: 2961	n:20000
Cons ci ratio: 3.458986e-02	ci left: 3.842284e-01	ci right 3.978033e-01	k: 7820	n:20000
KS ci ratio: 7.793027e-02	ci left: 1.079067e-01	ci right 1.167064e-01	k: 2245	n:20000
NDUFB2   20000 perm   3 sec   (5869 perm/sec)   p_kst 1.122500e-01   p_cons 3.910000e-01   p_joint 1.480500e-01

Outputting figure to mutsig2_images.part000000000113/NDUFB2.4_330_20000_0.11225_0.391_0.14805.png
                gene_name: NDUFB2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 55 percent done.
NDUFB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 1.862795e-02	ci left: 8.080607e-01	ci right 8.233550e-01	k: 8158	n:10000
NDUFB5   10000 perm   2 sec   (6269 perm/sec)   p_kst 8.158000e-01   p_cons 1.668000e-01   p_joint 6.218000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFB5.4_594_10000_0.8158_0.1668_0.6218.png
                gene_name: NDUFB5
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 57 percent done.
NECAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
Cons ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
NECAB1   10000 perm   2 sec   (6150 perm/sec)   p_kst 3.219000e-01   p_cons 9.647000e-01   p_joint 5.831000e-01

Outputting figure to mutsig2_images.part000000000113/NECAB1.4_1108_10000_0.3219_0.9647_0.5831.png
                gene_name: NECAB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 59 percent done.
NEFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
NEFH   10000 perm   2 sec   (5365 perm/sec)   p_kst 7.070000e-02   p_cons 3.510000e-01   p_joint 1.694000e-01

Joint ci ratio: 7.693061e-02	ci left: 1.104624e-01	ci right 1.193499e-01	k: 2297	n:20000
Cons ci ratio: 3.719601e-02	ci left: 3.503561e-01	ci right 3.636855e-01	k: 7140	n:20000
KS ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
NEFH   20000 perm   4 sec   (4849 perm/sec)   p_kst 6.910000e-02   p_cons 3.570000e-01   p_joint 1.148500e-01

Joint ci ratio: 7.001553e-02	ci left: 9.127818e-02	ci right 9.793390e-02	k: 2837	n:30000
Cons ci ratio: 3.125349e-02	ci left: 3.385899e-01	ci right 3.493736e-01	k: 10319	n:30000
KS ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
NEFH   30000 perm   6 sec   (4638 perm/sec)   p_kst 6.926667e-02   p_cons 3.439667e-01   p_joint 9.456667e-02

Outputting figure to mutsig2_images.part000000000113/NEFH.4_3079_30000_0.069267_0.34397_0.094567.png
                gene_name: NEFH
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 61 percent done.
NEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.454850e-02	ci left: 2.084612e-01	ci right 2.247043e-01	k: 2165	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
NEK2   10000 perm   2 sec   (6407 perm/sec)   p_kst 3.336000e-01   p_cons 5.880000e-02   p_joint 2.165000e-01

Joint ci ratio: 3.985130e-02	ci left: 3.195043e-01	ci right 3.325463e-01	k: 6520	n:20000
Cons ci ratio: 1.138568e-01	ci left: 5.275592e-02	ci right 5.917394e-02	k: 1118	n:20000
KS ci ratio: 3.986037e-02	ci left: 3.194048e-01	ci right 3.324458e-01	k: 6518	n:20000
NEK2   20000 perm   4 sec   (5708 perm/sec)   p_kst 3.259000e-01   p_cons 5.590000e-02   p_joint 3.260000e-01

Joint ci ratio: 4.294003e-02	ci left: 2.127103e-01	ci right 2.220779e-01	k: 6521	n:30000
Cons ci ratio: 9.318510e-02	ci left: 5.309866e-02	ci right 5.832113e-02	k: 1670	n:30000
KS ci ratio: 3.256933e-02	ci left: 3.202978e-01	ci right 3.309360e-01	k: 9768	n:30000
NEK2   30000 perm   6 sec   (5437 perm/sec)   p_kst 3.256000e-01   p_cons 5.566667e-02   p_joint 2.173667e-01

Outputting figure to mutsig2_images.part000000000113/NEK2.4_1370_30000_0.3256_0.055667_0.21737.png
                gene_name: NEK2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
NEK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
KS ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
NEK3   10000 perm   2 sec   (5989 perm/sec)   p_kst 6.162000e-01   p_cons 6.491000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEK3.4_1581_10000_0.6162_0.6491_1.png
                gene_name: NEK3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
NEK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
Cons ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
NEK5   10000 perm   2 sec   (6001 perm/sec)   p_kst 5.970000e-02   p_cons 6.251000e-01   p_joint 1.527000e-01

Joint ci ratio: 6.497890e-02	ci left: 1.489245e-01	ci right 1.589763e-01	k: 3078	n:20000
Cons ci ratio: 2.149717e-02	ci left: 6.176457e-01	ci right 6.311181e-01	k: 12488	n:20000
KS ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
NEK5   20000 perm   4 sec   (5364 perm/sec)   p_kst 5.965000e-02   p_cons 6.244000e-01   p_joint 1.539000e-01

Joint ci ratio: 4.896420e-02	ci left: 1.717056e-01	ci right 1.803573e-01	k: 5280	n:30000
Cons ci ratio: 1.762007e-02	ci left: 6.170865e-01	ci right 6.280898e-01	k: 18678	n:30000
KS ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
NEK5   30000 perm   6 sec   (5107 perm/sec)   p_kst 6.133333e-02   p_cons 6.226000e-01   p_joint 1.760000e-01

Outputting figure to mutsig2_images.part000000000113/NEK5.4_2207_30000_0.061333_0.6226_0.176.png
                gene_name: NEK5
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 68 percent done.
NEK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
Cons ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
NEK8   10000 perm   2 sec   (5924 perm/sec)   p_kst 1.168000e-01   p_cons 5.760000e-02   p_joint 8.640000e-02

Joint ci ratio: 1.003010e-01	ci left: 6.738054e-02	ci right 7.454480e-02	k: 1418	n:20000
Cons ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
KS ci ratio: 7.578032e-02	ci left: 1.135105e-01	ci right 1.225008e-01	k: 2359	n:20000
NEK8   20000 perm   4 sec   (5336 perm/sec)   p_kst 1.179500e-01   p_cons 5.375000e-02   p_joint 7.090000e-02

Joint ci ratio: 1.140796e-01	ci left: 3.570254e-02	ci right 4.005421e-02	k: 1135	n:30000
Cons ci ratio: 9.592074e-02	ci left: 5.019840e-02	ci right 5.528866e-02	k: 1581	n:30000
KS ci ratio: 6.217382e-02	ci left: 1.133505e-01	ci right 1.206572e-01	k: 3509	n:30000
NEK8   30000 perm   6 sec   (5097 perm/sec)   p_kst 1.169667e-01   p_cons 5.270000e-02   p_joint 3.783333e-02

Joint ci ratio: 9.922822e-02	ci left: 3.568374e-02	ci right 3.943378e-02	k: 1501	n:40000
Cons ci ratio: 8.611549e-02	ci left: 4.712522e-02	ci right 5.139052e-02	k: 1969	n:40000
KS ci ratio: 5.352742e-02	ci left: 1.150515e-01	ci right 1.214041e-01	k: 4728	n:40000
NEK8   40000 perm   8 sec   (4947 perm/sec)   p_kst 1.182000e-01   p_cons 4.922500e-02   p_joint 3.752500e-02

Outputting figure to mutsig2_images.part000000000113/NEK8.4_2139_40000_0.1182_0.049225_0.037525.png
                gene_name: NEK8
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 70 percent done.
NET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
Cons ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
KS ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
NET1   10000 perm   2 sec   (5816 perm/sec)   p_kst 1.076000e-01   p_cons 1.311000e-01   p_joint 1.129000e-01

Joint ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
Cons ci ratio: 7.293562e-02	ci left: 1.215781e-01	ci right 1.308308e-01	k: 2523	n:20000
KS ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
NET1   20000 perm   4 sec   (5229 perm/sec)   p_kst 1.020000e-01   p_cons 1.261500e-01   p_joint 8.985000e-02

Outputting figure to mutsig2_images.part000000000113/NET1.4_1936_20000_0.102_0.12615_0.08985.png
                gene_name: NET1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 73 percent done.
NDUFA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 1.512217e-02	ci left: 8.637614e-01	ci right 8.770220e-01	k: 8705	n:10000
NDUFA8   10000 perm   1 sec   (6701 perm/sec)   p_kst 8.705000e-01   p_cons 7.730000e-02   p_joint 6.559000e-01

Joint ci ratio: 2.029212e-02	ci left: 6.443977e-01	ci right 6.576584e-01	k: 13021	n:20000
Cons ci ratio: 9.523102e-02	ci left: 7.436884e-02	ci right 8.185436e-02	k: 1561	n:20000
KS ci ratio: 1.062319e-02	ci left: 8.672400e-01	ci right 8.765516e-01	k: 17439	n:20000
NDUFA8   20000 perm   3 sec   (5940 perm/sec)   p_kst 8.719500e-01   p_cons 7.805000e-02   p_joint 6.510500e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA8.3_535_20000_0.87195_0.07805_0.65105.png
                gene_name: NDUFA8
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 75 percent done.
NDUFV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
Cons ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
KS ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
NDUFV1   10000 perm   2 sec   (6416 perm/sec)   p_kst 1.594000e-01   p_cons 2.793000e-01   p_joint 2.136000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFV1.3_1435_10000_0.1594_0.2793_0.2136.png
                gene_name: NDUFV1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 77 percent done.
NEDD4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
Cons ci ratio: 3.148575e-02	ci left: 5.981504e-01	ci right 6.173868e-01	k: 6078	n:10000
KS ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
NEDD4L   10000 perm   2 sec   (5664 perm/sec)   p_kst 3.823000e-01   p_cons 6.078000e-01   p_joint 6.731000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD4L.3_3080_10000_0.3823_0.6078_0.6731.png
                gene_name: NEDD4L
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 80 percent done.
NEK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
Cons ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
KS ci ratio: 2.166601e-02	ci left: 7.575753e-01	ci right 7.742695e-01	k: 7660	n:10000
NEK4   10000 perm   2 sec   (5553 perm/sec)   p_kst 7.660000e-01   p_cons 3.727000e-01   p_joint 7.306000e-01

Outputting figure to mutsig2_images.part000000000113/NEK4.3_2590_10000_0.766_0.3727_0.7306.png
                gene_name: NEK4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 82 percent done.
NEK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
NEK9   10000 perm   2 sec   (5607 perm/sec)   p_kst 3.975000e-01   p_cons 1.131000e-01   p_joint 3.621000e-01

Joint ci ratio: 3.523014e-02	ci left: 3.755577e-01	ci right 3.890765e-01	k: 7646	n:20000
Cons ci ratio: 7.864204e-02	ci left: 1.061377e-01	ci right 1.148759e-01	k: 2209	n:20000
KS ci ratio: 3.430469e-02	ci left: 3.881658e-01	ci right 4.017647e-01	k: 7899	n:20000
NEK9   20000 perm   4 sec   (5066 perm/sec)   p_kst 3.949500e-01   p_cons 1.104500e-01   p_joint 3.823000e-01

Outputting figure to mutsig2_images.part000000000113/NEK9.3_3028_20000_0.39495_0.11045_0.3823.png
                gene_name: NEK9
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 84 percent done.
NDP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
NDP   10000 perm   1 sec   (7321 perm/sec)   p_kst 7.400000e-01   p_cons 7.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDP.2_410_10000_0.74_0.7483_1.png
                gene_name: NDP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
NDRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
Cons ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
KS ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
NDRG4   10000 perm   1 sec   (6789 perm/sec)   p_kst 3.420000e-01   p_cons 1.641000e-01   p_joint 3.912000e-01

Outputting figure to mutsig2_images.part000000000113/NDRG4.2_1240_10000_0.342_0.1641_0.3912.png
                gene_name: NDRG4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 89 percent done.
NDST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
NDST1   10000 perm   2 sec   (5964 perm/sec)   p_kst 9.086000e-01   p_cons 1.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDST1.2_2705_10000_0.9086_0.1398_1.png
                gene_name: NDST1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
NDUFA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
Cons ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
KS ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
NDUFA10   10000 perm   1 sec   (6783 perm/sec)   p_kst 2.570000e-01   p_cons 4.155000e-01   p_joint 5.591000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA10.2_1108_10000_0.257_0.4155_0.5591.png
                gene_name: NDUFA10
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 93 percent done.
NDUFA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
KS ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
NDUFA12   10000 perm   1 sec   (7181 perm/sec)   p_kst 9.827000e-01   p_cons 2.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFA12.2_454_10000_0.9827_0.2292_1.png
                gene_name: NDUFA12
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
NECAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
NECAP1   10000 perm   1 sec   (6912 perm/sec)   p_kst 6.454000e-01   p_cons 4.334000e-01   p_joint 9.904000e-01

Outputting figure to mutsig2_images.part000000000113/NECAP1.2_860_10000_0.6454_0.4334_0.9904.png
                gene_name: NECAP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
NEDD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
NEDD8   10000 perm   1 sec   (7618 perm/sec)   p_kst 5.500000e-02   p_cons 1.402000e-01   p_joint 7.890000e-02

Joint ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
Cons ci ratio: 6.788338e-02	ci left: 1.380276e-01	ci right 1.477765e-01	k: 2857	n:20000
KS ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
NEDD8   20000 perm   3 sec   (6664 perm/sec)   p_kst 5.370000e-02   p_cons 1.428500e-01   p_joint 8.175000e-02

Joint ci ratio: 1.614717e-02	ci left: 6.572843e-01	ci right 6.680175e-01	k: 19880	n:30000
Cons ci ratio: 5.590702e-02	ci left: 1.368495e-01	ci right 1.447536e-01	k: 4223	n:30000
KS ci ratio: 9.488055e-02	ci left: 5.127353e-02	ci right 5.641331e-02	k: 1614	n:30000
NEDD8   30000 perm   5 sec   (6317 perm/sec)   p_kst 5.380000e-02   p_cons 1.407667e-01   p_joint 6.626667e-01

Outputting figure to mutsig2_images.part000000000113/NEDD8.2_262_30000_0.0538_0.14077_0.66267.png
                gene_name: NEDD8
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000113
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 113 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 4422226: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000114> was used as the working directory.
Started at Wed Oct 24 18:00:51 2012
Results reported at Wed Oct 24 18:12:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000114.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000114.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 114  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000114.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    763.51 sec.
    Max Memory :      5268 MB
    Max Swap   :      7702 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
114
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 114
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 114: processing genes 10224 - 10314
Calculating significance of each gene.
Using projection method.
10224	NETO2	4.605260e-01
10225	NEU1	9.386770e-01
10226	NEU2	1
10227	NEU3	9.361434e-01
10228	NEU4	6.319183e-02
10229	NEURL	3.296570e-01
10230	NEURL2	1
10231	NEURL4	9.464835e-01
10232	NEUROD1	8.480590e-01
10233	NEUROD2	4.799574e-01
10234	NEUROD4	2.089200e-01
10235	NEUROD6	1.683363e-02
10236	NEUROG1	1
10237	NEUROG2	7.705282e-01
10238	NEUROG3	3.851775e-01
10239	NEXN	8.540026e-01
In gene NF1 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 8749    n = 1	mu =   7.03e-07
10240	NF1	5.546945e-03
In gene NF2 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 1660    n = 1	mu =   3.68e-07
10241	NF2	7.034381e-01
10242	NFAM1	3.611654e-01
10243	NFASC	1
10244	NFAT5	9.998435e-01
10245	NFATC1	9.967886e-01
10246	NFATC2	6.178381e-01
10247	NFATC2IP	8.610392e-01
10248	NFATC3	5.887311e-01
10249	NFATC4	7.252701e-01
10250	NFE2	1.878019e-01
10251	NFE2L1	9.566948e-01
10252	NFE2L2	1.466308e-01
10253	NFE2L3	1
10254	NFIA	9.547444e-01
10255	NFIB	5.316238e-01
10256	NFIC	8.462524e-01
10257	NFIL3	1
10258	NFIX	4.282037e-01
10259	NFKB1	9.899921e-01
10260	NFKB2	4.214615e-01
10261	NFKBIA	7.832133e-01
10262	NFKBIB	1
10263	NFKBID	2.853549e-03
10264	NFKBIE	8.437265e-01
10265	NFKBIL1	1
10266	NFKBIL2	1
10267	NFKBIZ	8.050388e-01
10268	NFRKB	9.737160e-01
10269	NFS1	3.279353e-01
10270	NFU1	5.739628e-01
10271	NFX1	9.878095e-01
10272	NFXL1	9.715918e-01
10273	NFYA	1
10274	NFYB	6.921052e-01
10275	NFYC	6.324603e-01
10276	NGB	5.255221e-02
10277	NGDN	3.310696e-01
10278	NGEF	8.870086e-01
10279	NGF	6.694272e-01
10280	NGFR	5.959800e-01
10281	NGFRAP1	1
10282	NGLY1	9.337724e-01
10283	NGRN	1
10284	NHEDC1	4.845434e-04
10285	NHEDC2	4.493168e-01
10286	NHEJ1	8.357239e-01
10287	NHLH1	4.371114e-01
10288	NHLH2	1
10289	NHLRC1	1
10290	NHLRC2	1
10291	NHLRC3	5.372465e-01
10292	NHLRC4	1
10293	NHP2	1
10294	NHP2L1	2.767103e-01
10295	NHS	4.691910e-01
10296	NHSL2	1
10297	NICN1	1
10298	NID1	9.875079e-01
10299	NID2	1
10300	NIF3L1	7.504077e-01
10301	NIN	9.044616e-01
10302	NINJ1	1
10303	NINJ2	3.927491e-01
10304	NINL	9.993426e-01
10305	NIP7	3.453537e-01
10306	NIPA1	7.533716e-01
10307	NIPA2	1
10308	NIPAL1	8.281970e-01
10309	NIPAL2	6.957810e-01
10310	NIPAL3	6.311941e-01
10311	NIPAL4	3.003168e-01
10312	NIPBL	9.999926e-01
10313	NIPSNAP1	1
10314	NIPSNAP3A	1
Done

Running MutSig 2:
Scatter job 114: processing genes 10224 - 10314
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
NF1   10000 perm   3 sec   (3011 perm/sec)   p_kst 1.335000e-01   p_cons 2.885000e-01   p_joint 1.556000e-01

Outputting figure to mutsig2_images.part000000000114/NF1.29_8813_10000_0.1335_0.2885_0.1556.png
                gene_name: NF1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
NIPBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
KS ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
NIPBL   10000 perm   3 sec   (3291 perm/sec)   p_kst 8.244000e-01   p_cons 8.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NIPBL.25_8644_10000_0.8244_0.8019_1.png
                gene_name: NIPBL
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
NHEDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.496550e-01	ci left: 5.937693e-02	ci right 6.907883e-02	k: 641	n:10000
Cons ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KS ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
NHEDC1   10000 perm   2 sec   (4972 perm/sec)   p_kst 1.530000e-02   p_cons 4.162000e-01   p_joint 6.410000e-02

Joint ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
Cons ci ratio: 3.275810e-02	ci left: 4.103536e-01	ci right 4.240705e-01	k: 8344	n:20000
KS ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
NHEDC1   20000 perm   4 sec   (4531 perm/sec)   p_kst 1.605000e-02   p_cons 4.172000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.274540e-01	ci left: 2.861535e-02	ci right 3.254292e-02	k: 916	n:30000
Cons ci ratio: 2.596555e-02	ci left: 4.260853e-01	ci right 4.373279e-01	k: 12951	n:30000
KS ci ratio: 1.756326e-01	ci left: 1.489743e-02	ci right 1.779733e-02	k: 489	n:30000
NHEDC1   30000 perm   7 sec   (4367 perm/sec)   p_kst 1.630000e-02   p_cons 4.317000e-01   p_joint 3.053333e-02

Joint ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
Cons ci ratio: 2.238662e-02	ci left: 4.290355e-01	ci right 4.387741e-01	k: 17356	n:40000
KS ci ratio: 1.523797e-01	ci left: 1.503367e-02	ci right 1.753727e-02	k: 650	n:40000
NHEDC1   40000 perm   9 sec   (4258 perm/sec)   p_kst 1.625000e-02   p_cons 4.339000e-01   p_joint 4.605000e-02

Joint ci ratio: 7.826052e-02	ci left: 4.590705e-02	ci right 4.966568e-02	k: 2388	n:50000
Cons ci ratio: 2.004949e-02	ci left: 4.289106e-01	ci right 4.376172e-01	k: 21663	n:50000
KS ci ratio: 1.339485e-01	ci left: 1.571094e-02	ci right 1.798565e-02	k: 841	n:50000
NHEDC1   50000 perm   12 sec   (4158 perm/sec)   p_kst 1.682000e-02   p_cons 4.332600e-01   p_joint 4.776000e-02

Joint ci ratio: 7.917580e-02	ci left: 3.769383e-02	ci right 4.081761e-02	k: 2354	n:60000
Cons ci ratio: 1.832359e-02	ci left: 4.287306e-01	ci right 4.366759e-01	k: 25962	n:60000
KS ci ratio: 1.239351e-01	ci left: 1.538269e-02	ci right 1.743114e-02	k: 983	n:60000
NHEDC1   60000 perm   15 sec   (4075 perm/sec)   p_kst 1.638333e-02   p_cons 4.327000e-01   p_joint 3.923333e-02

Joint ci ratio: 7.478106e-02	ci left: 3.635717e-02	ci right 3.919560e-02	k: 2643	n:70000
Cons ci ratio: 1.696985e-02	ci left: 4.288685e-01	ci right 4.362229e-01	k: 30278	n:70000
KS ci ratio: 1.134918e-01	ci left: 1.580530e-02	ci right 1.772078e-02	k: 1172	n:70000
NHEDC1   70000 perm   17 sec   (4007 perm/sec)   p_kst 1.674286e-02   p_cons 4.325429e-01   p_joint 3.775714e-02

Joint ci ratio: 6.791811e-02	ci left: 3.861566e-02	ci right 4.134283e-02	k: 3197	n:80000
Cons ci ratio: 1.586114e-02	ci left: 4.295003e-01	ci right 4.363796e-01	k: 34635	n:80000
KS ci ratio: 1.055855e-01	ci left: 1.604246e-02	ci right 1.784282e-02	k: 1354	n:80000
NHEDC1   80000 perm   20 sec   (3938 perm/sec)   p_kst 1.692500e-02   p_cons 4.329375e-01   p_joint 3.996250e-02

Joint ci ratio: 6.856566e-02	ci left: 3.384156e-02	ci right 3.625520e-02	k: 3153	n:90000
Cons ci ratio: 1.496062e-02	ci left: 4.294820e-01	ci right 4.359668e-01	k: 38945	n:90000
KS ci ratio: 9.939378e-02	ci left: 1.614380e-02	ci right 1.784309e-02	k: 1528	n:90000
NHEDC1   90000 perm   23 sec   (3875 perm/sec)   p_kst 1.697778e-02   p_cons 4.327222e-01   p_joint 3.503333e-02

Outputting figure to mutsig2_images.part000000000114/NHEDC1.13_1692_90000_0.016978_0.43272_0.035033.png
                gene_name: NHEDC1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 6 percent done.
NID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
Cons ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
KS ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
NID1   10000 perm   2 sec   (4244 perm/sec)   p_kst 5.840000e-02   p_cons 7.787000e-01   p_joint 1.133000e-01

Joint ci ratio: 7.057092e-02	ci left: 1.289134e-01	ci right 1.383934e-01	k: 2672	n:20000
Cons ci ratio: 1.472531e-02	ci left: 7.740925e-01	ci right 7.856260e-01	k: 15598	n:20000
KS ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
NID1   20000 perm   5 sec   (3852 perm/sec)   p_kst 5.720000e-02   p_cons 7.799000e-01   p_joint 1.336000e-01

Joint ci ratio: 5.250219e-02	ci left: 1.525702e-01	ci right 1.608297e-01	k: 4700	n:30000
Cons ci ratio: 1.195191e-02	ci left: 7.772168e-01	ci right 7.865952e-01	k: 23458	n:30000
KS ci ratio: 9.054644e-02	ci left: 5.613148e-02	ci right 6.148769e-02	k: 1763	n:30000
NID1   30000 perm   8 sec   (3697 perm/sec)   p_kst 5.876667e-02   p_cons 7.819333e-01   p_joint 1.566667e-01

Outputting figure to mutsig2_images.part000000000114/NID1.13_3824_30000_0.058767_0.78193_0.15667.png
                gene_name: NID1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 7 percent done.
NID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
Cons ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
NID2   10000 perm   2 sec   (4820 perm/sec)   p_kst 9.600000e-03   p_cons 6.738000e-01   p_joint 4.710000e-02

Joint ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
Cons ci ratio: 1.936896e-02	ci left: 6.653433e-01	ci right 6.784067e-01	k: 13438	n:20000
KS ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
NID2   20000 perm   5 sec   (4389 perm/sec)   p_kst 9.800000e-03   p_cons 6.719000e-01   p_joint 4.120000e-02

Joint ci ratio: 1.418210e-01	ci left: 2.306968e-02	ci right 2.662315e-02	k: 744	n:30000
Cons ci ratio: 1.502199e-02	ci left: 6.889175e-01	ci right 6.993782e-01	k: 20825	n:30000
KS ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
NID2   30000 perm   7 sec   (4198 perm/sec)   p_kst 9.566667e-03   p_cons 6.941667e-01   p_joint 2.480000e-02

Joint ci ratio: 1.367629e-01	ci left: 1.874709e-02	ci right 2.152319e-02	k: 804	n:40000
Cons ci ratio: 1.316877e-02	ci left: 6.844124e-01	ci right 6.935101e-01	k: 27559	n:40000
KS ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
NID2   40000 perm   10 sec   (4080 perm/sec)   p_kst 9.600000e-03   p_cons 6.889750e-01   p_joint 2.010000e-02

Joint ci ratio: 1.075100e-01	ci left: 2.450586e-02	ci right 2.730955e-02	k: 1294	n:50000
Cons ci ratio: 1.178390e-02	ci left: 6.847009e-01	ci right 6.928372e-01	k: 34439	n:50000
KS ci ratio: 1.767632e-01	ci left: 8.878603e-03	ci right 1.061903e-02	k: 486	n:50000
NID2   50000 perm   13 sec   (3983 perm/sec)   p_kst 9.720000e-03   p_cons 6.887800e-01   p_joint 2.588000e-02

Joint ci ratio: 8.801765e-02	ci left: 3.058976e-02	ci right 3.342241e-02	k: 1919	n:60000
Cons ci ratio: 1.077594e-02	ci left: 6.843089e-01	ci right 6.917396e-01	k: 41282	n:60000
KS ci ratio: 1.576451e-01	ci left: 9.395429e-03	ci right 1.101914e-02	k: 611	n:60000
NID2   60000 perm   15 sec   (3898 perm/sec)   p_kst 1.018333e-02   p_cons 6.880333e-01   p_joint 3.198333e-02

Joint ci ratio: 9.343407e-02	ci left: 2.338132e-02	ci right 2.568689e-02	k: 1716	n:70000
Cons ci ratio: 1.009574e-02	ci left: 6.794524e-01	ci right 6.863610e-01	k: 47804	n:70000
KS ci ratio: 1.457451e-01	ci left: 9.482641e-03	ci right 1.098694e-02	k: 715	n:70000
NID2   70000 perm   18 sec   (3822 perm/sec)   p_kst 1.021429e-02   p_cons 6.829143e-01   p_joint 2.451429e-02

Joint ci ratio: 9.264773e-02	ci left: 2.087250e-02	ci right 2.291238e-02	k: 1750	n:80000
Cons ci ratio: 9.438573e-03	ci left: 6.799132e-01	ci right 6.863735e-01	k: 54652	n:80000
KS ci ratio: 1.368643e-01	ci left: 9.454905e-03	ci right 1.085596e-02	k: 811	n:80000
NID2   80000 perm   21 sec   (3755 perm/sec)   p_kst 1.013750e-02   p_cons 6.831500e-01   p_joint 2.187500e-02

Joint ci ratio: 6.284028e-02	ci left: 4.014057e-02	ci right 4.275576e-02	k: 3729	n:90000
Cons ci ratio: 8.998167e-03	ci left: 6.752592e-01	ci right 6.813738e-01	k: 61049	n:90000
KS ci ratio: 1.284347e-01	ci left: 9.586091e-03	ci right 1.091243e-02	k: 921	n:90000
NID2   90000 perm   24 sec   (3688 perm/sec)   p_kst 1.023333e-02   p_cons 6.783222e-01   p_joint 4.143333e-02

Joint ci ratio: 6.387070e-02	ci left: 3.513938e-02	ci right 3.746761e-02	k: 3629	n:100000
Cons ci ratio: 8.547025e-03	ci left: 6.748734e-01	ci right 6.806763e-01	k: 67778	n:100000
KS ci ratio: 1.215114e-01	ci left: 9.673761e-03	ci right 1.093489e-02	k: 1029	n:100000
NID2   100000 perm   28 sec   (3629 perm/sec)   p_kst 1.029000e-02   p_cons 6.777800e-01   p_joint 3.629000e-02

Joint ci ratio: 6.034383e-02	ci left: 3.582947e-02	ci right 3.806775e-02	k: 4063	n:110000
Cons ci ratio: 8.147204e-03	ci left: 6.751203e-01	ci right 6.806522e-01	k: 74568	n:110000
KS ci ratio: 1.158566e-01	ci left: 9.702909e-03	ci right 1.090494e-02	k: 1132	n:110000
NID2   110000 perm   31 sec   (3575 perm/sec)   p_kst 1.029091e-02   p_cons 6.778909e-01   p_joint 3.693636e-02

Joint ci ratio: 6.110477e-02	ci left: 3.214420e-02	ci right 3.417844e-02	k: 3978	n:120000
Cons ci ratio: 7.803619e-03	ci left: 6.750556e-01	ci right 6.803524e-01	k: 81325	n:120000
KS ci ratio: 1.103395e-01	ci left: 9.833699e-03	ci right 1.099014e-02	k: 1248	n:120000
NID2   120000 perm   34 sec   (3529 perm/sec)   p_kst 1.040000e-02   p_cons 6.777083e-01   p_joint 3.315000e-02

Joint ci ratio: 5.682292e-02	ci left: 3.431098e-02	ci right 3.632520e-02	k: 4590	n:130000
Cons ci ratio: 7.497885e-03	ci left: 6.751363e-01	ci right 6.802250e-01	k: 88099	n:130000
KS ci ratio: 1.061728e-01	ci left: 9.825664e-03	ci right 1.093480e-02	k: 1348	n:130000
NID2   130000 perm   37 sec   (3484 perm/sec)   p_kst 1.036923e-02   p_cons 6.776846e-01   p_joint 3.530769e-02

Joint ci ratio: 5.575830e-02	ci left: 3.314838e-02	ci right 3.505670e-02	k: 4773	n:140000
Cons ci ratio: 7.214144e-03	ci left: 6.758959e-01	ci right 6.807967e-01	k: 94969	n:140000
KS ci ratio: 1.023737e-01	ci left: 9.833405e-03	ci right 1.090131e-02	k: 1450	n:140000
NID2   140000 perm   41 sec   (3433 perm/sec)   p_kst 1.035714e-02   p_cons 6.783500e-01   p_joint 3.409286e-02

Joint ci ratio: 5.231501e-02	ci left: 3.513531e-02	ci right 3.702934e-02	k: 5411	n:150000
Cons ci ratio: 6.958510e-03	ci left: 6.766707e-01	ci right 6.814024e-01	k: 101856	n:150000
KS ci ratio: 9.914900e-02	ci left: 9.801709e-03	ci right 1.083069e-02	k: 1546	n:150000
NID2   150000 perm   44 sec   (3385 perm/sec)   p_kst 1.030667e-02   p_cons 6.790400e-01   p_joint 3.607333e-02

Outputting figure to mutsig2_images.part000000000114/NID2.13_4216_150000_0.010307_0.67904_0.036073.png
                gene_name: NID2
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 9 percent done.
NFASC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
Cons ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
KS ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
NFASC   10000 perm   2 sec   (4469 perm/sec)   p_kst 5.356000e-01   p_cons 4.454000e-01   p_joint 6.438000e-01

Outputting figure to mutsig2_images.part000000000114/NFASC.11_4248_10000_0.5356_0.4454_0.6438.png
                gene_name: NFASC
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 11 percent done.
NFATC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
Cons ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
KS ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
NFATC3   10000 perm   2 sec   (4878 perm/sec)   p_kst 5.453000e-01   p_cons 5.757000e-01   p_joint 6.261000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC3.10_3498_10000_0.5453_0.5757_0.6261.png
                gene_name: NFATC3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 13 percent done.
NFIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
Cons ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
KS ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
NFIA   10000 perm   2 sec   (5113 perm/sec)   p_kst 1.800000e-02   p_cons 1.236000e-01   p_joint 4.680000e-02

Joint ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
Cons ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
KS ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
NFIA   20000 perm   4 sec   (4639 perm/sec)   p_kst 1.845000e-02   p_cons 1.098500e-01   p_joint 2.310000e-02

Joint ci ratio: 1.412388e-01	ci left: 2.326276e-02	ci right 2.683003e-02	k: 750	n:30000
Cons ci ratio: 6.441908e-02	ci left: 1.063163e-01	ci right 1.134261e-01	k: 3295	n:30000
KS ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
NFIA   30000 perm   8 sec   (3992 perm/sec)   p_kst 1.883333e-02   p_cons 1.098333e-01   p_joint 2.500000e-02

Joint ci ratio: 1.315229e-01	ci left: 2.029445e-02	ci right 2.317557e-02	k: 868	n:40000
Cons ci ratio: 5.575074e-02	ci left: 1.069249e-01	ci right 1.130818e-01	k: 4399	n:40000
KS ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
NFIA   40000 perm   10 sec   (3963 perm/sec)   p_kst 1.830000e-02   p_cons 1.099750e-01   p_joint 2.170000e-02

Joint ci ratio: 1.141548e-01	ci left: 2.172325e-02	ci right 2.437252e-02	k: 1151	n:50000
Cons ci ratio: 4.989566e-02	ci left: 1.071317e-01	ci right 1.126337e-01	k: 5493	n:50000
KS ci ratio: 1.276898e-01	ci left: 1.731752e-02	ci right 1.969884e-02	k: 924	n:50000
NFIA   50000 perm   13 sec   (3813 perm/sec)   p_kst 1.848000e-02   p_cons 1.098600e-01   p_joint 2.302000e-02

Joint ci ratio: 1.105279e-01	ci left: 1.939728e-02	ci right 2.168276e-02	k: 1231	n:60000
Cons ci ratio: 4.549333e-02	ci left: 1.076060e-01	ci right 1.126318e-01	k: 6606	n:60000
KS ci ratio: 1.157700e-01	ci left: 1.766347e-02	ci right 1.985010e-02	k: 1124	n:60000
NFIA   60000 perm   17 sec   (3532 perm/sec)   p_kst 1.873333e-02   p_cons 1.101000e-01   p_joint 2.051667e-02

Joint ci ratio: 1.037127e-01	ci left: 1.896175e-02	ci right 2.104973e-02	k: 1399	n:70000
Cons ci ratio: 4.202734e-02	ci left: 1.082149e-01	ci right 1.128746e-01	k: 7737	n:70000
KS ci ratio: 1.067480e-01	ci left: 1.789017e-02	ci right 1.992142e-02	k: 1322	n:70000
NFIA   70000 perm   20 sec   (3468 perm/sec)   p_kst 1.888571e-02   p_cons 1.105286e-01   p_joint 1.998571e-02

Joint ci ratio: 9.116819e-02	ci left: 2.155675e-02	ci right 2.362807e-02	k: 1806	n:80000
Cons ci ratio: 3.924426e-02	ci left: 1.087072e-01	ci right 1.130711e-01	k: 8870	n:80000
KS ci ratio: 9.995483e-02	ci left: 1.791885e-02	ci right 1.981627e-02	k: 1508	n:80000
NFIA   80000 perm   23 sec   (3425 perm/sec)   p_kst 1.885000e-02   p_cons 1.108750e-01   p_joint 2.257500e-02

Outputting figure to mutsig2_images.part000000000114/NFIA.9_1779_80000_0.01885_0.11088_0.022575.png
                gene_name: NFIA
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 15 percent done.
NHS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.569355e-02	ci left: 8.549826e-01	ci right 8.686059e-01	k: 8619	n:10000
KS ci ratio: 2.224561e-02	ci left: 7.478628e-01	ci right 7.647876e-01	k: 7564	n:10000
NHS   10000 perm   2 sec   (4184 perm/sec)   p_kst 7.564000e-01   p_cons 8.619000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NHS.9_5030_10000_0.7564_0.8619_1.png
                gene_name: NHS
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
NFATC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
Cons ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KS ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
NFATC2   10000 perm   2 sec   (4326 perm/sec)   p_kst 2.520000e-02   p_cons 1.340000e-02   p_joint 1.290000e-02

Joint ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
NFATC2   20000 perm   5 sec   (4153 perm/sec)   p_kst 2.710000e-02   p_cons 1.220000e-02   p_joint 8.650000e-03

Joint ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
Cons ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
KS ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
NFATC2   30000 perm   8 sec   (3863 perm/sec)   p_kst 2.746667e-02   p_cons 1.213333e-02   p_joint 1.510000e-02

Joint ci ratio: 2.254682e-01	ci left: 6.654309e-03	ci right 8.368353e-03	k: 299	n:40000
Cons ci ratio: 1.815153e-01	ci left: 1.047823e-02	ci right 1.259358e-02	k: 460	n:40000
KS ci ratio: 1.189097e-01	ci left: 2.487510e-02	ci right 2.804415e-02	k: 1057	n:40000
NFATC2   40000 perm   11 sec   (3711 perm/sec)   p_kst 2.642500e-02   p_cons 1.150000e-02   p_joint 7.475000e-03

Joint ci ratio: 1.461698e-01	ci left: 1.314267e-02	ci right 1.523430e-02	k: 708	n:50000
Cons ci ratio: 1.622458e-01	ci left: 1.060309e-02	ci right 1.249425e-02	k: 576	n:50000
KS ci ratio: 1.104798e-01	ci left: 2.320152e-02	ci right 2.593406e-02	k: 1227	n:50000
NFATC2   50000 perm   14 sec   (3691 perm/sec)   p_kst 2.454000e-02   p_cons 1.152000e-02   p_joint 1.416000e-02

Joint ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
Cons ci ratio: 1.492478e-01	ci left: 1.051776e-02	ci right 1.222999e-02	k: 681	n:60000
KS ci ratio: 1.012989e-01	ci left: 2.311516e-02	ci right 2.559781e-02	k: 1460	n:60000
NFATC2   60000 perm   16 sec   (3659 perm/sec)   p_kst 2.433333e-02   p_cons 1.135000e-02   p_joint 1.355000e-02

Joint ci ratio: 1.327682e-01	ci left: 1.148279e-02	ci right 1.312944e-02	k: 860	n:70000
Cons ci ratio: 1.384116e-01	ci left: 1.054395e-02	ci right 1.212552e-02	k: 792	n:70000
KS ci ratio: 9.337833e-02	ci left: 2.340924e-02	ci right 2.571611e-02	k: 1718	n:70000
NFATC2   70000 perm   19 sec   (3622 perm/sec)   p_kst 2.454286e-02   p_cons 1.131429e-02   p_joint 1.228571e-02

Joint ci ratio: 1.387762e-01	ci left: 9.189300e-03	ci right 1.057159e-02	k: 789	n:80000
Cons ci ratio: 1.306650e-01	ci left: 1.039761e-02	ci right 1.186317e-02	k: 889	n:80000
KS ci ratio: 8.854629e-02	ci left: 2.285264e-02	ci right 2.498207e-02	k: 1912	n:80000
NFATC2   80000 perm   22 sec   (3583 perm/sec)   p_kst 2.390000e-02   p_cons 1.111250e-02   p_joint 9.862500e-03

Joint ci ratio: 1.422531e-01	ci left: 7.771196e-03	ci right 8.971926e-03	k: 752	n:90000
Cons ci ratio: 1.232700e-01	ci left: 1.042575e-02	ci right 1.180603e-02	k: 999	n:90000
KS ci ratio: 8.336580e-02	ci left: 2.297725e-02	ci right 2.498692e-02	k: 2157	n:90000
NFATC2   90000 perm   25 sec   (3542 perm/sec)   p_kst 2.396667e-02   p_cons 1.110000e-02   p_joint 8.355556e-03

Joint ci ratio: 1.384737e-01	ci left: 7.399228e-03	ci right 8.509597e-03	k: 794	n:100000
Cons ci ratio: 1.170034e-01	ci left: 1.045014e-02	ci right 1.175845e-02	k: 1109	n:100000
KS ci ratio: 7.905026e-02	ci left: 2.305043e-02	ci right 2.495732e-02	k: 2399	n:100000
NFATC2   100000 perm   29 sec   (3502 perm/sec)   p_kst 2.399000e-02   p_cons 1.109000e-02   p_joint 7.940000e-03

Joint ci ratio: 1.357978e-01	ci left: 7.007401e-03	ci right 8.037002e-03	k: 826	n:110000
Cons ci ratio: 1.127313e-01	ci left: 1.025943e-02	ci right 1.149384e-02	k: 1195	n:110000
KS ci ratio: 7.573974e-02	ci left: 2.287157e-02	ci right 2.468093e-02	k: 2614	n:110000
NFATC2   110000 perm   32 sec   (3459 perm/sec)   p_kst 2.376364e-02   p_cons 1.086364e-02   p_joint 7.509091e-03

Joint ci ratio: 1.319597e-01	ci left: 6.818064e-03	ci right 7.789308e-03	k: 875	n:120000
Cons ci ratio: 1.076292e-01	ci left: 1.034453e-02	ci right 1.152928e-02	k: 1311	n:120000
KS ci ratio: 7.249874e-02	ci left: 2.292039e-02	ci right 2.465273e-02	k: 2853	n:120000
NFATC2   120000 perm   35 sec   (3418 perm/sec)   p_kst 2.377500e-02   p_cons 1.092500e-02   p_joint 7.291667e-03

Joint ci ratio: 1.319970e-01	ci left: 6.293484e-03	ci right 7.190269e-03	k: 875	n:130000
Cons ci ratio: 1.028715e-01	ci left: 1.047758e-02	ci right 1.162131e-02	k: 1435	n:130000
KS ci ratio: 6.987286e-02	ci left: 2.281186e-02	ci right 2.447102e-02	k: 3072	n:130000
NFATC2   130000 perm   38 sec   (3377 perm/sec)   p_kst 2.363077e-02   p_cons 1.103846e-02   p_joint 6.730769e-03

Joint ci ratio: 1.327939e-01	ci left: 5.774784e-03	ci right 6.603012e-03	k: 865	n:140000
Cons ci ratio: 9.917692e-02	ci left: 1.048808e-02	ci right 1.158945e-02	k: 1544	n:140000
KS ci ratio: 6.738736e-02	ci left: 2.280412e-02	ci right 2.440141e-02	k: 3303	n:140000
NFATC2   140000 perm   42 sec   (3335 perm/sec)   p_kst 2.359286e-02   p_cons 1.102857e-02   p_joint 6.178571e-03

Joint ci ratio: 1.369376e-01	ci left: 5.061138e-03	ci right 5.811507e-03	k: 814	n:150000
Cons ci ratio: 9.620728e-02	ci left: 1.041973e-02	ci right 1.147930e-02	k: 1641	n:150000
KS ci ratio: 6.458114e-02	ci left: 2.319855e-02	ci right 2.475326e-02	k: 3595	n:150000
NFATC2   150000 perm   45 sec   (3297 perm/sec)   p_kst 2.396667e-02   p_cons 1.094000e-02   p_joint 5.426667e-03

Joint ci ratio: 1.118927e-01	ci left: 7.186355e-03	ci right 8.044132e-03	k: 1217	n:160000
Cons ci ratio: 9.289703e-02	ci left: 1.049468e-02	ci right 1.152316e-02	k: 1760	n:160000
KS ci ratio: 6.242823e-02	ci left: 2.329867e-02	ci right 2.480615e-02	k: 3847	n:160000
NFATC2   160000 perm   49 sec   (3258 perm/sec)   p_kst 2.404375e-02   p_cons 1.100000e-02   p_joint 7.606250e-03

Joint ci ratio: 1.044090e-01	ci left: 7.793962e-03	ci right 8.658229e-03	k: 1397	n:170000
Cons ci ratio: 9.002764e-02	ci left: 1.053260e-02	ci right 1.153124e-02	k: 1874	n:170000
KS ci ratio: 6.054533e-02	ci left: 2.333560e-02	ci right 2.479834e-02	k: 4090	n:170000
NFATC2   170000 perm   53 sec   (3221 perm/sec)   p_kst 2.405882e-02   p_cons 1.102353e-02   p_joint 8.217647e-03

Joint ci ratio: 1.034678e-01	ci left: 7.501595e-03	ci right 8.325483e-03	k: 1423	n:180000
Cons ci ratio: 8.758698e-02	ci left: 1.052327e-02	ci right 1.149258e-02	k: 1980	n:180000
KS ci ratio: 5.873985e-02	ci left: 2.343475e-02	ci right 2.485841e-02	k: 4345	n:180000
NFATC2   180000 perm   57 sec   (3183 perm/sec)   p_kst 2.413889e-02   p_cons 1.100000e-02   p_joint 7.905556e-03

Joint ci ratio: 1.007795e-01	ci left: 7.501686e-03	ci right 8.302911e-03	k: 1500	n:190000
Cons ci ratio: 8.539672e-02	ci left: 1.049978e-02	ci right 1.144154e-02	k: 2083	n:190000
KS ci ratio: 5.718879e-02	ci left: 2.344101e-02	ci right 2.482619e-02	k: 4584	n:190000
NFATC2   190000 perm   60 sec   (3147 perm/sec)   p_kst 2.412632e-02   p_cons 1.096316e-02   p_joint 7.894737e-03

Joint ci ratio: 1.023216e-01	ci left: 6.912082e-03	ci right 7.662306e-03	k: 1456	n:200000
Cons ci ratio: 8.320921e-02	ci left: 1.051810e-02	ci right 1.143616e-02	k: 2194	n:200000
KS ci ratio: 5.571896e-02	ci left: 2.347668e-02	ci right 2.482716e-02	k: 4829	n:200000
NFATC2   200000 perm   64 sec   (3111 perm/sec)   p_kst 2.414500e-02   p_cons 1.097000e-02   p_joint 7.280000e-03

Joint ci ratio: 9.141100e-02	ci left: 8.283950e-03	ci right 9.082082e-03	k: 1822	n:210000
Cons ci ratio: 8.077530e-02	ci left: 1.064228e-02	ci right 1.154272e-02	k: 2328	n:210000
KS ci ratio: 5.437889e-02	ci left: 2.349056e-02	ci right 2.480833e-02	k: 5070	n:210000
NFATC2   210000 perm   68 sec   (3075 perm/sec)   p_kst 2.414286e-02   p_cons 1.108571e-02   p_joint 8.676190e-03

Outputting figure to mutsig2_images.part000000000114/NFATC2.8_2940_210000_0.024143_0.011086_0.0086762.png
                gene_name: NFATC2
               theta_stop: 0.091 
                    nperm: 210000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0087 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0091 

Current progress: 19 percent done.
NFATC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
NFATC4   10000 perm   2 sec   (4762 perm/sec)   p_kst 2.691000e-01   p_cons 1.456000e-01   p_joint 2.407000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC4.8_3007_10000_0.2691_0.1456_0.2407.png
                gene_name: NFATC4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 20 percent done.
NEUROD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
Cons ci ratio: 3.285669e-02	ci left: 5.775764e-01	ci right 5.969727e-01	k: 5873	n:10000
KS ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
NEUROD6   10000 perm   2 sec   (5709 perm/sec)   p_kst 3.771000e-01   p_cons 5.873000e-01   p_joint 5.245000e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD6.7_1018_10000_0.3771_0.5873_0.5245.png
                gene_name: NEUROD6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 22 percent done.
NFKBID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
Cons ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
KS ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
NFKBID   10000 perm   2 sec   (5996 perm/sec)   p_kst 7.592000e-01   p_cons 1.555000e-01   p_joint 3.529000e-01

Outputting figure to mutsig2_images.part000000000114/NFKBID.7_978_10000_0.7592_0.1555_0.3529.png
                gene_name: NFKBID
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 24 percent done.
NFRKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
Cons ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
KS ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
NFRKB   10000 perm   2 sec   (4914 perm/sec)   p_kst 1.925000e-01   p_cons 4.047000e-01   p_joint 3.124000e-01

Outputting figure to mutsig2_images.part000000000114/NFRKB.7_4075_10000_0.1925_0.4047_0.3124.png
                gene_name: NFRKB
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
NIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
KS ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
NIN   10000 perm   2 sec   (4369 perm/sec)   p_kst 8.570000e-02   p_cons 1.200000e-02   p_joint 1.400000e-02

Joint ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
Cons ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
KS ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
NIN   20000 perm   5 sec   (3974 perm/sec)   p_kst 8.490000e-02   p_cons 1.160000e-02   p_joint 6.100000e-03

Joint ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
Cons ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
KS ci ratio: 7.442972e-02	ci left: 8.147463e-02	ci right 8.780608e-02	k: 2538	n:30000
NIN   30000 perm   8 sec   (3825 perm/sec)   p_kst 8.460000e-02   p_cons 1.263333e-02   p_joint 5.333333e-03

Joint ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
Cons ci ratio: 1.709469e-01	ci left: 1.186501e-02	ci right 1.410652e-02	k: 518	n:40000
KS ci ratio: 6.483910e-02	ci left: 8.100385e-02	ci right 8.645676e-02	k: 3348	n:40000
NIN   40000 perm   11 sec   (3731 perm/sec)   p_kst 8.370000e-02   p_cons 1.295000e-02   p_joint 1.005000e-02

Joint ci ratio: 1.835442e-01	ci left: 8.209900e-03	ci right 9.887844e-03	k: 451	n:50000
Cons ci ratio: 1.539552e-01	ci left: 1.181382e-02	ci right 1.380334e-02	k: 639	n:50000
KS ci ratio: 5.836181e-02	ci left: 8.033955e-02	ci right 8.518902e-02	k: 4137	n:50000
NIN   50000 perm   14 sec   (3653 perm/sec)   p_kst 8.274000e-02   p_cons 1.278000e-02   p_joint 9.020000e-03

Joint ci ratio: 1.888018e-01	ci left: 6.459656e-03	ci right 7.822004e-03	k: 427	n:60000
Cons ci ratio: 1.411947e-01	ci left: 1.178714e-02	ci right 1.359378e-02	k: 760	n:60000
KS ci ratio: 5.318119e-02	ci left: 8.082086e-02	ci right 8.525290e-02	k: 4981	n:60000
NIN   60000 perm   17 sec   (3575 perm/sec)   p_kst 8.301667e-02   p_cons 1.266667e-02   p_joint 7.116667e-03

Joint ci ratio: 1.483849e-01	ci left: 9.138520e-03	ci right 1.061682e-02	k: 690	n:70000
Cons ci ratio: 1.256460e-01	ci left: 1.285194e-02	ci right 1.458871e-02	k: 959	n:70000
KS ci ratio: 4.930258e-02	ci left: 8.078282e-02	ci right 8.488041e-02	k: 5797	n:70000
NIN   70000 perm   20 sec   (3517 perm/sec)   p_kst 8.281429e-02   p_cons 1.370000e-02   p_joint 9.857143e-03

Joint ci ratio: 1.400348e-01	ci left: 9.020350e-03	ci right 1.039056e-02	k: 775	n:80000
Cons ci ratio: 1.165201e-01	ci left: 1.313655e-02	ci right 1.477397e-02	k: 1115	n:80000
KS ci ratio: 4.616125e-02	ci left: 8.077558e-02	ci right 8.460474e-02	k: 6614	n:80000
NIN   80000 perm   23 sec   (3461 perm/sec)   p_kst 8.267500e-02   p_cons 1.393750e-02   p_joint 9.687500e-03

Joint ci ratio: 1.390308e-01	ci left: 8.146509e-03	ci right 9.374357e-03	k: 787	n:90000
Cons ci ratio: 1.062452e-01	ci left: 1.410777e-02	ci right 1.570150e-02	k: 1340	n:90000
KS ci ratio: 4.334334e-02	ci left: 8.150254e-02	ci right 8.512437e-02	k: 7497	n:90000
NIN   90000 perm   26 sec   (3411 perm/sec)   p_kst 8.330000e-02   p_cons 1.488889e-02   p_joint 8.744444e-03

Joint ci ratio: 1.216308e-01	ci left: 9.654363e-03	ci right 1.091428e-02	k: 1027	n:100000
Cons ci ratio: 1.008619e-01	ci left: 1.412894e-02	ci right 1.563939e-02	k: 1487	n:100000
KS ci ratio: 4.109790e-02	ci left: 8.167364e-02	ci right 8.511057e-02	k: 8338	n:100000
NIN   100000 perm   30 sec   (3366 perm/sec)   p_kst 8.338000e-02   p_cons 1.487000e-02   p_joint 1.027000e-02

Joint ci ratio: 1.219881e-01	ci left: 8.732369e-03	ci right 9.875546e-03	k: 1022	n:110000
Cons ci ratio: 9.655202e-02	ci left: 1.405031e-02	ci right 1.548453e-02	k: 1623	n:110000
KS ci ratio: 3.920608e-02	ci left: 8.167345e-02	ci right 8.494856e-02	k: 9163	n:110000
NIN   110000 perm   33 sec   (3316 perm/sec)   p_kst 8.330000e-02   p_cons 1.475455e-02   p_joint 9.290909e-03

Joint ci ratio: 1.043796e-01	ci left: 1.100994e-02	ci right 1.223050e-02	k: 1393	n:120000
Cons ci ratio: 9.245841e-02	ci left: 1.407551e-02	ci right 1.544808e-02	k: 1770	n:120000
KS ci ratio: 3.758229e-02	ci left: 8.156067e-02	ci right 8.469285e-02	k: 9974	n:120000
NIN   120000 perm   37 sec   (3267 perm/sec)   p_kst 8.311667e-02   p_cons 1.475000e-02   p_joint 1.160833e-02

Joint ci ratio: 1.022968e-01	ci left: 1.059753e-02	ci right 1.174751e-02	k: 1451	n:130000
Cons ci ratio: 8.875102e-02	ci left: 1.412802e-02	ci right 1.544760e-02	k: 1921	n:130000
KS ci ratio: 3.611200e-02	ci left: 8.160496e-02	ci right 8.461367e-02	k: 10803	n:130000
NIN   130000 perm   40 sec   (3222 perm/sec)   p_kst 8.310000e-02   p_cons 1.477692e-02   p_joint 1.116154e-02

Joint ci ratio: 9.979927e-02	ci left: 1.035571e-02	ci right 1.145040e-02	k: 1525	n:140000
Cons ci ratio: 8.535217e-02	ci left: 1.420893e-02	ci right 1.548271e-02	k: 2077	n:140000
KS ci ratio: 3.480342e-02	ci left: 8.163789e-02	ci right 8.453655e-02	k: 11631	n:140000
NIN   140000 perm   44 sec   (3181 perm/sec)   p_kst 8.307857e-02   p_cons 1.483571e-02   p_joint 1.089286e-02

Outputting figure to mutsig2_images.part000000000114/NIN.7_6666_140000_0.083079_0.014836_0.010893.png
                gene_name: NIN
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 28 percent done.
NINL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
NINL   10000 perm   2 sec   (4640 perm/sec)   p_kst 4.300000e-01   p_cons 1.247000e-01   p_joint 2.570000e-01

Joint ci ratio: 5.011533e-02	ci left: 2.283447e-01	ci right 2.401327e-01	k: 4684	n:20000
Cons ci ratio: 7.260678e-02	ci left: 1.225624e-01	ci right 1.318463e-01	k: 2543	n:20000
KS ci ratio: 3.192366e-02	ci left: 4.229247e-01	ci right 4.366957e-01	k: 8596	n:20000
NINL   20000 perm   5 sec   (4223 perm/sec)   p_kst 4.298000e-01   p_cons 1.271500e-01   p_joint 2.342000e-01

Outputting figure to mutsig2_images.part000000000114/NINL.7_4241_20000_0.4298_0.12715_0.2342.png
                gene_name: NINL
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 30 percent done.
NEU4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
NEU4   10000 perm   2 sec   (5682 perm/sec)   p_kst 9.178000e-01   p_cons 7.823000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEU4.6_1510_10000_0.9178_0.7823_1.png
                gene_name: NEU4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
NEURL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
KS ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
NEURL4   10000 perm   2 sec   (4289 perm/sec)   p_kst 9.960000e-02   p_cons 1.513000e-01   p_joint 1.348000e-01

Joint ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
Cons ci ratio: 6.990824e-02	ci left: 1.310804e-01	ci right 1.406257e-01	k: 2716	n:20000
KS ci ratio: 8.481310e-02	ci left: 9.239258e-02	ci right 1.006252e-01	k: 1929	n:20000
NEURL4   20000 perm   5 sec   (3925 perm/sec)   p_kst 9.645000e-02   p_cons 1.358000e-01   p_joint 1.065500e-01

Outputting figure to mutsig2_images.part000000000114/NEURL4.6_4805_20000_0.09645_0.1358_0.10655.png
                gene_name: NEURL4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 33 percent done.
NEUROD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KS ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
NEUROD4   10000 perm   2 sec   (5908 perm/sec)   p_kst 5.968000e-01   p_cons 3.240000e-02   p_joint 1.131000e-01

Joint ci ratio: 9.418845e-02	ci left: 7.593396e-02	ci right 8.348877e-02	k: 1593	n:20000
Cons ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
KS ci ratio: 2.390953e-02	ci left: 5.664602e-01	ci right 5.802185e-01	k: 11467	n:20000
NEUROD4   20000 perm   4 sec   (5304 perm/sec)   p_kst 5.733500e-01   p_cons 3.125000e-02   p_joint 7.965000e-02

Joint ci ratio: 6.773257e-02	ci left: 9.702136e-02	ci right 1.038562e-01	k: 3012	n:30000
Cons ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
KS ci ratio: 1.909152e-02	ci left: 5.786317e-01	ci right 5.898187e-01	k: 17527	n:30000
NEUROD4   30000 perm   6 sec   (5054 perm/sec)   p_kst 5.842333e-01   p_cons 3.103333e-02   p_joint 1.004000e-01

Joint ci ratio: 5.680057e-02	ci left: 1.033697e-01	ci right 1.094376e-01	k: 4255	n:40000
Cons ci ratio: 1.093982e-01	ci left: 2.939614e-02	ci right 3.282238e-02	k: 1243	n:40000
KS ci ratio: 1.657335e-02	ci left: 5.782248e-01	ci right 5.879131e-01	k: 23323	n:40000
NEUROD4   40000 perm   8 sec   (4910 perm/sec)   p_kst 5.830750e-01   p_cons 3.107500e-02   p_joint 1.063750e-01

Joint ci ratio: 5.134575e-02	ci left: 1.017130e-01	ci right 1.070930e-01	k: 5219	n:50000
Cons ci ratio: 9.695171e-02	ci left: 3.012298e-02	ci right 3.321171e-02	k: 1582	n:50000
KS ci ratio: 1.483029e-02	ci left: 5.785233e-01	ci right 5.871871e-01	k: 29143	n:50000
NEUROD4   50000 perm   10 sec   (4784 perm/sec)   p_kst 5.828600e-01   p_cons 3.164000e-02   p_joint 1.043800e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD4.6_1000_50000_0.58286_0.03164_0.10438.png
                gene_name: NEUROD4
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
NFAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
Cons ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
KS ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
NFAT5   10000 perm   2 sec   (4447 perm/sec)   p_kst 1.974000e-01   p_cons 5.381000e-01   p_joint 3.392000e-01

Outputting figure to mutsig2_images.part000000000114/NFAT5.6_4706_10000_0.1974_0.5381_0.3392.png
                gene_name: NFAT5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 37 percent done.
NFKB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
Cons ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
KS ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
NFKB2   10000 perm   2 sec   (5113 perm/sec)   p_kst 2.547000e-01   p_cons 2.665000e-01   p_joint 2.919000e-01

Outputting figure to mutsig2_images.part000000000114/NFKB2.6_2791_10000_0.2547_0.2665_0.2919.png
                gene_name: NFKB2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 39 percent done.
NETO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
KS ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
NETO2   10000 perm   2 sec   (6111 perm/sec)   p_kst 8.539000e-01   p_cons 7.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NETO2.5_1614_10000_0.8539_0.7768_1.png
                gene_name: NETO2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
NFE2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
KS ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
NFE2L2   10000 perm   2 sec   (5305 perm/sec)   p_kst 6.240000e-02   p_cons 1.767000e-01   p_joint 9.210000e-02

Joint ci ratio: 8.157699e-02	ci left: 9.926215e-02	ci right 1.077535e-01	k: 2069	n:20000
Cons ci ratio: 6.059246e-02	ci left: 1.677807e-01	ci right 1.783146e-01	k: 3460	n:20000
KS ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
NFE2L2   20000 perm   4 sec   (4843 perm/sec)   p_kst 6.400000e-02   p_cons 1.730000e-01   p_joint 1.034500e-01

Joint ci ratio: 9.820257e-02	ci left: 4.795141e-02	ci right 5.293611e-02	k: 1512	n:30000
Cons ci ratio: 5.072217e-02	ci left: 1.618054e-01	ci right 1.702594e-01	k: 4980	n:30000
KS ci ratio: 8.864005e-02	ci left: 5.848091e-02	ci right 6.393778e-02	k: 1835	n:30000
NFE2L2   30000 perm   6 sec   (4621 perm/sec)   p_kst 6.116667e-02   p_cons 1.660000e-01   p_joint 5.040000e-02

Outputting figure to mutsig2_images.part000000000114/NFE2L2.5_1838_30000_0.061167_0.166_0.0504.png
                gene_name: NFE2L2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 43 percent done.
NIPAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
Cons ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
KS ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
NIPAL4   10000 perm   2 sec   (5804 perm/sec)   p_kst 4.451000e-01   p_cons 3.856000e-01   p_joint 4.090000e-01

Outputting figure to mutsig2_images.part000000000114/NIPAL4.5_1425_10000_0.4451_0.3856_0.409.png
                gene_name: NIPAL4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 44 percent done.
NFE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
Cons ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
KS ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
NFE2   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.005000e-01   p_cons 5.314000e-01   p_joint 4.273000e-01

Outputting figure to mutsig2_images.part000000000114/NFE2.4_1130_10000_0.3005_0.5314_0.4273.png
                gene_name: NFE2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
NFIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
Cons ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
NFIC   10000 perm   2 sec   (5847 perm/sec)   p_kst 3.809000e-01   p_cons 4.321000e-01   p_joint 4.891000e-01

Outputting figure to mutsig2_images.part000000000114/NFIC.4_1578_10000_0.3809_0.4321_0.4891.png
                gene_name: NFIC
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 48 percent done.
NFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
Cons ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
KS ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
NFS1   10000 perm   2 sec   (6232 perm/sec)   p_kst 4.102000e-01   p_cons 7.439000e-01   p_joint 7.817000e-01

Outputting figure to mutsig2_images.part000000000114/NFS1.4_1426_10000_0.4102_0.7439_0.7817.png
                gene_name: NFS1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 50 percent done.
NGEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
Cons ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
KS ci ratio: 4.008997e-02	ci left: 4.788572e-01	ci right 4.985494e-01	k: 4887	n:10000
NGEF   10000 perm   2 sec   (5816 perm/sec)   p_kst 4.887000e-01   p_cons 4.662000e-01   p_joint 5.893000e-01

Outputting figure to mutsig2_images.part000000000114/NGEF.4_2300_10000_0.4887_0.4662_0.5893.png
                gene_name: NGEF
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 52 percent done.
NEU3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
Cons ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
KS ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
NEU3   10000 perm   2 sec   (6143 perm/sec)   p_kst 6.771000e-01   p_cons 6.849000e-01   p_joint 9.822000e-01

Outputting figure to mutsig2_images.part000000000114/NEU3.3_1398_10000_0.6771_0.6849_0.9822.png
                gene_name: NEU3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 54 percent done.
NEURL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
NEURL   10000 perm   2 sec   (6033 perm/sec)   p_kst 9.390000e-02   p_cons 5.532000e-01   p_joint 2.706000e-01

Joint ci ratio: 6.611205e-02	ci left: 1.445350e-01	ci right 1.544671e-01	k: 2989	n:20000
Cons ci ratio: 2.511385e-02	ci left: 5.422223e-01	ci right 5.560634e-01	k: 10983	n:20000
KS ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
NEURL   20000 perm   4 sec   (5466 perm/sec)   p_kst 9.320000e-02   p_cons 5.491500e-01   p_joint 1.494500e-01

Outputting figure to mutsig2_images.part000000000114/NEURL.3_1749_20000_0.0932_0.54915_0.14945.png
                gene_name: NEURL
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
NFATC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
KS ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
NFATC1   10000 perm   2 sec   (5427 perm/sec)   p_kst 4.139000e-01   p_cons 8.405000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC1.3_3023_10000_0.4139_0.8405_0.7275.png
                gene_name: NFATC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 57 percent done.
NFIX
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
Cons ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
NFIX   10000 perm   2 sec   (6471 perm/sec)   p_kst 3.199000e-01   p_cons 7.176000e-01   p_joint 8.839000e-01

Outputting figure to mutsig2_images.part000000000114/NFIX.2_1362_10000_0.3199_0.7176_0.8839.png
                gene_name: NFIX
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 59 percent done.
NFKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
Cons ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
KS ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
NFKB1   10000 perm   2 sec   (5501 perm/sec)   p_kst 4.522000e-01   p_cons 4.153000e-01   p_joint 6.366000e-01

Outputting figure to mutsig2_images.part000000000114/NFKB1.3_3002_10000_0.4522_0.4153_0.6366.png
                gene_name: NFKB1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 61 percent done.
NFXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
Cons ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
KS ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
NFXL1   10000 perm   2 sec   (5547 perm/sec)   p_kst 5.861000e-01   p_cons 2.162000e-01   p_joint 5.103000e-01

Outputting figure to mutsig2_images.part000000000114/NFXL1.3_2824_10000_0.5861_0.2162_0.5103.png
                gene_name: NFXL1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 63 percent done.
NGDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
NGDN   10000 perm   2 sec   (6559 perm/sec)   p_kst 2.397000e-01   p_cons 1.030000e-02   p_joint 4.050000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
KS ci ratio: 4.882335e-02	ci left: 2.377627e-01	ci right 2.497119e-01	k: 4874	n:20000
NGDN   20000 perm   3 sec   (5833 perm/sec)   p_kst 2.437000e-01   p_cons 9.550000e-03   p_joint 3.690000e-02

Joint ci ratio: 1.308024e-01	ci left: 2.716245e-02	ci right 3.099614e-02	k: 871	n:30000
Cons ci ratio: 2.229420e-01	ci left: 9.062469e-03	ci right 1.136720e-02	k: 305	n:30000
KS ci ratio: 3.998533e-02	ci left: 2.377578e-01	ci right 2.474921e-01	k: 7278	n:30000
NGDN   30000 perm   5 sec   (5542 perm/sec)   p_kst 2.426000e-01   p_cons 1.016667e-02   p_joint 2.903333e-02

Joint ci ratio: 1.222752e-01	ci left: 2.351631e-02	ci right 2.660316e-02	k: 1001	n:40000
Cons ci ratio: 1.889083e-01	ci left: 9.643388e-03	ci right 1.167859e-02	k: 425	n:40000
KS ci ratio: 3.478058e-02	ci left: 2.368151e-01	ci right 2.452225e-01	k: 9640	n:40000
NGDN   40000 perm   7 sec   (5346 perm/sec)   p_kst 2.410000e-01   p_cons 1.062500e-02   p_joint 2.502500e-02

Joint ci ratio: 9.299081e-02	ci left: 3.272182e-02	ci right 3.593254e-02	k: 1715	n:50000
Cons ci ratio: 1.685656e-01	ci left: 9.797512e-03	ci right 1.161997e-02	k: 534	n:50000
KS ci ratio: 3.094171e-02	ci left: 2.392257e-01	ci right 2.467641e-01	k: 12149	n:50000
NGDN   50000 perm   10 sec   (5088 perm/sec)   p_kst 2.429800e-01   p_cons 1.068000e-02   p_joint 3.430000e-02

Joint ci ratio: 6.276952e-02	ci left: 5.911435e-02	ci right 6.296158e-02	k: 3661	n:60000
Cons ci ratio: 1.548571e-01	ci left: 9.747893e-03	ci right 1.139996e-02	k: 633	n:60000
KS ci ratio: 2.819982e-02	ci left: 2.401529e-01	ci right 2.470386e-01	k: 14615	n:60000
NGDN   60000 perm   12 sec   (4986 perm/sec)   p_kst 2.435833e-01   p_cons 1.055000e-02   p_joint 6.101667e-02

Joint ci ratio: 5.228595e-02	ci left: 7.238184e-02	ci right 7.628210e-02	k: 5202	n:70000
Cons ci ratio: 1.431420e-01	ci left: 9.840773e-03	ci right 1.137163e-02	k: 741	n:70000
KS ci ratio: 2.614953e-02	ci left: 2.398263e-01	ci right 2.461950e-01	k: 17010	n:70000
NGDN   70000 perm   15 sec   (4790 perm/sec)   p_kst 2.430000e-01   p_cons 1.058571e-02   p_joint 7.431429e-02

Joint ci ratio: 4.991036e-02	ci left: 6.979800e-02	ci right 7.338315e-02	k: 5726	n:80000
Cons ci ratio: 1.336584e-01	ci left: 9.926066e-03	ci right 1.135975e-02	k: 850	n:80000
KS ci ratio: 2.446077e-02	ci left: 2.400311e-01	ci right 2.459876e-01	k: 19440	n:80000
NGDN   80000 perm   17 sec   (4701 perm/sec)   p_kst 2.430000e-01   p_cons 1.062500e-02   p_joint 7.157500e-02

Joint ci ratio: 5.953576e-02	ci left: 4.458572e-02	ci right 4.733253e-02	k: 4135	n:90000
Cons ci ratio: 1.259065e-01	ci left: 9.984250e-03	ci right 1.133646e-02	k: 958	n:90000
KS ci ratio: 2.309611e-02	ci left: 2.396584e-01	ci right 2.452693e-01	k: 21821	n:90000
NGDN   90000 perm   20 sec   (4615 perm/sec)   p_kst 2.424556e-01   p_cons 1.064444e-02   p_joint 4.594444e-02

Joint ci ratio: 6.457545e-02	ci left: 3.439115e-02	ci right 3.669589e-02	k: 3553	n:100000
Cons ci ratio: 1.182486e-01	ci left: 1.022684e-02	ci right 1.152177e-02	k: 1086	n:100000
KS ci ratio: 2.186606e-02	ci left: 2.405534e-01	ci right 2.458815e-01	k: 24321	n:100000
NGDN   100000 perm   22 sec   (4529 perm/sec)   p_kst 2.432100e-01   p_cons 1.086000e-02   p_joint 3.553000e-02

Joint ci ratio: 6.467415e-02	ci left: 3.127197e-02	ci right 3.337096e-02	k: 3554	n:110000
Cons ci ratio: 1.122578e-01	ci left: 1.034780e-02	ci right 1.158727e-02	k: 1205	n:110000
KS ci ratio: 2.082286e-02	ci left: 2.411290e-01	ci right 2.462118e-01	k: 26803	n:110000
NGDN   110000 perm   25 sec   (4458 perm/sec)   p_kst 2.436636e-01   p_cons 1.095455e-02   p_joint 3.230909e-02

Joint ci ratio: 6.196360e-02	ci left: 3.127402e-02	ci right 3.328200e-02	k: 3872	n:120000
Cons ci ratio: 1.076707e-01	ci left: 1.033642e-02	ci right 1.152073e-02	k: 1310	n:120000
KS ci ratio: 1.993941e-02	ci left: 2.411817e-01	ci right 2.460474e-01	k: 29233	n:120000
NGDN   120000 perm   27 sec   (4389 perm/sec)   p_kst 2.436083e-01   p_cons 1.091667e-02   p_joint 3.226667e-02

Joint ci ratio: 6.446819e-02	ci left: 2.676159e-02	ci right 2.855187e-02	k: 3594	n:130000
Cons ci ratio: 1.039754e-01	ci left: 1.025272e-02	ci right 1.138465e-02	k: 1405	n:130000
KS ci ratio: 1.914924e-02	ci left: 2.414295e-01	ci right 2.461050e-01	k: 31689	n:130000
NGDN   130000 perm   30 sec   (4321 perm/sec)   p_kst 2.437615e-01   p_cons 1.080769e-02   p_joint 2.764615e-02

Joint ci ratio: 6.510278e-02	ci left: 2.442042e-02	ci right 2.607075e-02	k: 3533	n:140000
Cons ci ratio: 1.001649e-01	ci left: 1.027909e-02	ci right 1.136989e-02	k: 1514	n:140000
KS ci ratio: 1.844398e-02	ci left: 2.416879e-01	ci right 2.461942e-01	k: 34151	n:140000
NGDN   140000 perm   33 sec   (4255 perm/sec)   p_kst 2.439357e-01   p_cons 1.081429e-02   p_joint 2.523571e-02

Joint ci ratio: 7.116487e-02	ci left: 1.912061e-02	ci right 2.053804e-02	k: 2973	n:150000
Cons ci ratio: 9.698663e-02	ci left: 1.025054e-02	ci right 1.130183e-02	k: 1615	n:150000
KS ci ratio: 1.780617e-02	ci left: 2.420209e-01	ci right 2.463757e-01	k: 36629	n:150000
NGDN   150000 perm   36 sec   (4191 perm/sec)   p_kst 2.441933e-01   p_cons 1.076667e-02   p_joint 1.982000e-02

Outputting figure to mutsig2_images.part000000000114/NGDN.3_1000_150000_0.24419_0.010767_0.01982.png
                gene_name: NGDN
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 65 percent done.
NHEDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
Cons ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
NHEDC2   10000 perm   2 sec   (6229 perm/sec)   p_kst 1.428000e-01   p_cons 3.980000e-02   p_joint 6.040000e-02

Joint ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
Cons ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
KS ci ratio: 6.878449e-02	ci left: 1.348738e-01	ci right 1.445312e-01	k: 2793	n:20000
NHEDC2   20000 perm   4 sec   (5568 perm/sec)   p_kst 1.396500e-01   p_cons 4.220000e-02   p_joint 1.126000e-01

Joint ci ratio: 8.611952e-02	ci left: 6.181128e-02	ci right 6.740673e-02	k: 1937	n:30000
Cons ci ratio: 9.973935e-02	ci left: 4.651929e-02	ci right 5.143519e-02	k: 1468	n:30000
KS ci ratio: 5.616261e-02	ci left: 1.357625e-01	ci right 1.436408e-01	k: 4190	n:30000
NHEDC2   30000 perm   6 sec   (5253 perm/sec)   p_kst 1.396667e-01   p_cons 4.893333e-02   p_joint 6.456667e-02

Outputting figure to mutsig2_images.part000000000114/NHEDC2.3_1658_30000_0.13967_0.048933_0.064567.png
                gene_name: NHEDC2
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 67 percent done.
NIPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
Cons ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
KS ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
NIPA1   10000 perm   2 sec   (6560 perm/sec)   p_kst 5.473000e-01   p_cons 4.581000e-01   p_joint 7.505000e-01

Outputting figure to mutsig2_images.part000000000114/NIPA1.3_1010_10000_0.5473_0.4581_0.7505.png
                gene_name: NIPA1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 69 percent done.
NEUROD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
NEUROD2   10000 perm   1 sec   (6688 perm/sec)   p_kst 4.100000e-02   p_cons 3.990000e-02   p_joint 9.744000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
KS ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
NEUROD2   20000 perm   3 sec   (5906 perm/sec)   p_kst 4.095000e-02   p_cons 4.065000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.095946e-01	ci left: 3.865423e-02	ci right 4.316856e-02	k: 1226	n:30000
KS ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
NEUROD2   30000 perm   5 sec   (5622 perm/sec)   p_kst 4.123333e-02   p_cons 4.086667e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 9.567682e-02	ci left: 3.834483e-02	ci right 4.222227e-02	k: 1610	n:40000
KS ci ratio: 9.449130e-02	ci left: 3.929756e-02	ci right 4.321939e-02	k: 1649	n:40000
NEUROD2   40000 perm   7 sec   (5425 perm/sec)   p_kst 4.122500e-02   p_cons 4.025000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROD2.2_1153_40000_0.041225_0.04025_1.png
                gene_name: NEUROD2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
NEUROG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
NEUROG3   10000 perm   1 sec   (6995 perm/sec)   p_kst 2.296000e-01   p_cons 2.249000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROG3.2_649_10000_0.2296_0.2249_1.png
                gene_name: NEUROG3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
NEXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
NEXN   10000 perm   2 sec   (6440 perm/sec)   p_kst 6.064000e-01   p_cons 3.238000e-01   p_joint 9.783000e-01

Outputting figure to mutsig2_images.part000000000114/NEXN.2_2076_10000_0.6064_0.3238_0.9783.png
                gene_name: NEXN
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 74 percent done.
NF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
NF2   10000 perm   2 sec   (6263 perm/sec)   p_kst 9.086000e-01   p_cons 1.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NF2.2_1892_10000_0.9086_0.1975_1.png
                gene_name: NF2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NFAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
Cons ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
KS ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
NFAM1   10000 perm   1 sec   (6872 perm/sec)   p_kst 3.677000e-01   p_cons 4.257000e-01   p_joint 6.442000e-01

Outputting figure to mutsig2_images.part000000000114/NFAM1.2_837_10000_0.3677_0.4257_0.6442.png
                gene_name: NFAM1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 78 percent done.
NFE2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
Cons ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
NFE2L1   10000 perm   2 sec   (6076 perm/sec)   p_kst 9.280000e-02   p_cons 5.110000e-02   p_joint 5.670000e-01

Joint ci ratio: 2.621880e-02	ci left: 5.208025e-01	ci right 5.346894e-01	k: 10555	n:20000
Cons ci ratio: 1.208834e-01	ci left: 4.692297e-02	ci right 5.300872e-02	k: 998	n:20000
KS ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
NFE2L1   20000 perm   4 sec   (5407 perm/sec)   p_kst 9.535000e-02   p_cons 4.990000e-02   p_joint 5.277500e-01

Joint ci ratio: 2.501934e-02	ci left: 4.443588e-01	ci right 4.556508e-01	k: 13500	n:30000
Cons ci ratio: 9.806613e-02	ci left: 4.808163e-02	ci right 5.307253e-02	k: 1516	n:30000
KS ci ratio: 7.026190e-02	ci left: 9.068766e-02	ci right 9.732454e-02	k: 2819	n:30000
NFE2L1   30000 perm   6 sec   (5150 perm/sec)   p_kst 9.396667e-02   p_cons 5.053333e-02   p_joint 4.500000e-01

Outputting figure to mutsig2_images.part000000000114/NFE2L1.2_2339_30000_0.093967_0.050533_0.45.png
                gene_name: NFE2L1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
NFIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
NFIB   10000 perm   1 sec   (6795 perm/sec)   p_kst 2.659000e-01   p_cons 4.117000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000114/NFIB.2_1299_10000_0.2659_0.4117_0.3711.png
                gene_name: NFIB
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 81 percent done.
NFKBIZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
Cons ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
KS ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
NFKBIZ   10000 perm   2 sec   (6114 perm/sec)   p_kst 6.767000e-01   p_cons 9.208000e-01   p_joint 9.834000e-01

Outputting figure to mutsig2_images.part000000000114/NFKBIZ.2_2205_10000_0.6767_0.9208_0.9834.png
                gene_name: NFKBIZ
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 83 percent done.
NFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
KS ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
NFX1   10000 perm   2 sec   (5523 perm/sec)   p_kst 9.697000e-01   p_cons 5.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFX1.2_3577_10000_0.9697_0.592_1.png
                gene_name: NFX1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
NFYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
Cons ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
KS ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
NFYC   10000 perm   1 sec   (6966 perm/sec)   p_kst 8.514000e-01   p_cons 9.515000e-01   p_joint 9.742000e-01

Outputting figure to mutsig2_images.part000000000114/NFYC.2_1105_10000_0.8514_0.9515_0.9742.png
                gene_name: NFYC
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
NGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
Cons ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
KS ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
NGB   10000 perm   1 sec   (7064 perm/sec)   p_kst 5.520000e-01   p_cons 2.335000e-01   p_joint 3.318000e-01

Outputting figure to mutsig2_images.part000000000114/NGB.2_472_10000_0.552_0.2335_0.3318.png
                gene_name: NGB
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 89 percent done.
NGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
NGFR   10000 perm   1 sec   (6838 perm/sec)   p_kst 2.888000e-01   p_cons 8.438000e-01   p_joint 6.113000e-01

Outputting figure to mutsig2_images.part000000000114/NGFR.2_1308_10000_0.2888_0.8438_0.6113.png
                gene_name: NGFR
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 91 percent done.
NGLY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
Cons ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
KS ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
NGLY1   10000 perm   2 sec   (6165 perm/sec)   p_kst 9.579000e-01   p_cons 1.699000e-01   p_joint 9.792000e-01

Outputting figure to mutsig2_images.part000000000114/NGLY1.2_2118_10000_0.9579_0.1699_0.9792.png
                gene_name: NGLY1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
NHLRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 1.654028e-02	ci left: 8.417290e-01	ci right 8.558672e-01	k: 8489	n:10000
NHLRC2   10000 perm   2 sec   (6117 perm/sec)   p_kst 8.489000e-01   p_cons 7.823000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NHLRC2.2_2225_10000_0.8489_0.7823_1.png
                gene_name: NHLRC2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
NHLRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
NHLRC3   10000 perm   1 sec   (6713 perm/sec)   p_kst 2.668000e-01   p_cons 1.249000e-01   p_joint 4.912000e-01

Joint ci ratio: 2.141019e-02	ci left: 6.195522e-01	ci right 6.330110e-01	k: 12526	n:20000
Cons ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
KS ci ratio: 4.637670e-02	ci left: 2.570570e-01	ci right 2.693119e-01	k: 5263	n:20000
NHLRC3   20000 perm   3 sec   (5924 perm/sec)   p_kst 2.631500e-01   p_cons 1.191000e-01   p_joint 6.263000e-01

Outputting figure to mutsig2_images.part000000000114/NHLRC3.2_1072_20000_0.26315_0.1191_0.6263.png
                gene_name: NHLRC3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 96 percent done.
NIP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
Cons ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
NIP7   10000 perm   1 sec   (7024 perm/sec)   p_kst 8.660000e-02   p_cons 4.222000e-01   p_joint 2.576000e-01

Joint ci ratio: 6.390297e-02	ci left: 1.532661e-01	ci right 1.634335e-01	k: 3166	n:20000
Cons ci ratio: 3.253682e-02	ci left: 4.136456e-01	ci right 4.273775e-01	k: 8410	n:20000
KS ci ratio: 8.937081e-02	ci left: 8.381499e-02	ci right 9.170534e-02	k: 1754	n:20000
NIP7   20000 perm   3 sec   (6211 perm/sec)   p_kst 8.770000e-02   p_cons 4.205000e-01   p_joint 1.583000e-01

Outputting figure to mutsig2_images.part000000000114/NIP7.2_563_20000_0.0877_0.4205_0.1583.png
                gene_name: NIP7
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
NIPAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
Cons ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
KS ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
NIPAL3   10000 perm   2 sec   (6616 perm/sec)   p_kst 9.070000e-02   p_cons 1.354000e-01   p_joint 4.890000e-02

Joint ci ratio: 1.156184e-01	ci left: 5.119939e-02	ci right 5.753095e-02	k: 1086	n:20000
Cons ci ratio: 7.005750e-02	ci left: 1.305879e-01	ci right 1.401184e-01	k: 2706	n:20000
KS ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
NIPAL3   20000 perm   3 sec   (5873 perm/sec)   p_kst 8.990000e-02   p_cons 1.353000e-01   p_joint 5.430000e-02

Joint ci ratio: 9.827099e-02	ci left: 4.788630e-02	ci right 5.286790e-02	k: 1510	n:30000
Cons ci ratio: 5.750954e-02	ci left: 1.302300e-01	ci right 1.379744e-01	k: 4022	n:30000
KS ci ratio: 7.209675e-02	ci left: 8.645686e-02	ci right 9.295618e-02	k: 2690	n:30000
NIPAL3   30000 perm   5 sec   (5537 perm/sec)   p_kst 8.966667e-02   p_cons 1.340667e-01   p_joint 5.033333e-02

Outputting figure to mutsig2_images.part000000000114/NIPAL3.2_1265_30000_0.089667_0.13407_0.050333.png
                gene_name: NIPAL3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000114
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 114 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 4422230: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000115> was used as the working directory.
Started at Wed Oct 24 18:00:51 2012
Results reported at Wed Oct 24 19:00:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000115.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000115.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 115  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000115.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3625.61 sec.
    Max Memory :      5334 MB
    Max Swap   :      7626 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
115
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 115
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 115: processing genes 10315 - 10404
Calculating significance of each gene.
Using projection method.
10315	NIPSNAP3B	6.213512e-01
10316	NISCH	9.977752e-01
10317	NIT1	5.049029e-01
10318	NIT2	1
10319	NKAIN1	3.890406e-01
10320	NKAIN2	4.244487e-01
10321	NKAIN3	4.361015e-01
10322	NKAIN4	1
10323	NKAP	5.664049e-01
10324	NKAPL	8.312627e-02
10325	NKD1	3.781362e-02
10326	NKD2	2.321497e-01
10327	NKG7	1
10328	NKIRAS1	1
10329	NKIRAS2	1
10330	NKPD1	8.299810e-01
10331	NKRF	5.588154e-01
10332	NKTR	7.056546e-01
10333	NKX2-1	1.370594e-01
10334	NKX2-2	1
10335	NKX2-3	2.893678e-01
10336	NKX2-5	1.792639e-01
10337	NKX3-1	1
10338	NKX3-2	4.028938e-01
10339	NKX6-1	7.180318e-02
10340	NKX6-2	6.502037e-01
10341	NKX6-3	1
10342	NLE1	3.496209e-01
10343	NLGN1	4.033391e-04
10344	NLGN2	4.262232e-01
10345	NLGN3	1
10346	NLGN4X	7.648431e-01
10347	NLGN4Y	9.544643e-01
10348	NLK	1
10349	NLN	5.272772e-01
10350	NLRC3	1
10351	NLRC4	5.311943e-01
10352	NLRC5	9.265570e-01
10353	NLRP1	9.437851e-01
10354	NLRP10	8.077747e-01
10355	NLRP11	9.936309e-01
10356	NLRP12	3.185012e-01
10357	NLRP13	3.489593e-02
10358	NLRP14	5.330126e-04
10359	NLRP2	1
10360	NLRP3	1
10361	NLRP4	9.399830e-01
10362	NLRP5	1
10363	NLRP6	5.083433e-01
10364	NLRP7	9.703997e-01
10365	NLRP8	1.582777e-02
10366	NLRP9	7.436254e-01
10367	NLRX1	6.535402e-01
10368	NMB	1
10369	NMBR	5.380345e-02
10370	NMD3	6.012920e-01
10371	NME1	1
10372	NME1-NME2	1
10373	NME2	1
10374	NME3	1
10375	NME4	1
10376	NME5	5.506019e-01
10377	NME6	5.826685e-01
10378	NME7	6.777552e-01
10379	NMI	7.790344e-01
10380	NMNAT1	7.907858e-01
10381	NMNAT2	3.033186e-01
10382	NMNAT3	5.361269e-01
10383	NMRAL1	1
10384	NMS	3.017059e-02
10385	NMT1	8.475123e-01
10386	NMT2	8.886610e-01
10387	NMU	5.443874e-01
10388	NMUR1	6.546221e-01
10389	NMUR2	1.137800e-01
10390	NNAT	1
10391	NNMT	3.198438e-01
10392	NNT	1
10393	NOB1	1
10394	NOBOX	5.388549e-01
10395	NOC2L	9.903041e-01
10396	NOC3L	9.609383e-01
10397	NOC4L	5.880637e-01
10398	NOD1	1
10399	NOD2	9.753736e-01
10400	NODAL	7.658787e-01
10401	NOG	1
10402	NOL10	9.238102e-01
10403	NOL11	9.160668e-01
10404	NOL12	1
Done

Running MutSig 2:
Scatter job 115: processing genes 10315 - 10404
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NLRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
NLRP3   10000 perm   3 sec   (3476 perm/sec)   p_kst 4.660000e-02   p_cons 1.116000e-01   p_joint 8.140000e-02

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
KS ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
NLRP3   20000 perm   8 sec   (2405 perm/sec)   p_kst 4.655000e-02   p_cons 1.048500e-01   p_joint 3.675000e-02

Joint ci ratio: 1.150301e-01	ci left: 3.511911e-02	ci right 3.943776e-02	k: 1117	n:30000
Cons ci ratio: 6.589976e-02	ci left: 1.020126e-01	ci right 1.089973e-01	k: 3164	n:30000
KS ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
NLRP3   30000 perm   12 sec   (2526 perm/sec)   p_kst 4.750000e-02   p_cons 1.054667e-01   p_joint 3.723333e-02

Joint ci ratio: 1.042738e-01	ci left: 3.234286e-02	ci right 3.592519e-02	k: 1364	n:40000
Cons ci ratio: 5.729137e-02	ci left: 1.017653e-01	ci right 1.077923e-01	k: 4190	n:40000
KS ci ratio: 8.769547e-02	ci left: 4.548489e-02	ci right 4.968111e-02	k: 1902	n:40000
NLRP3   40000 perm   15 sec   (2624 perm/sec)   p_kst 4.755000e-02   p_cons 1.047500e-01   p_joint 3.410000e-02

Joint ci ratio: 9.318781e-02	ci left: 3.258498e-02	ci right 3.578940e-02	k: 1708	n:50000
Cons ci ratio: 5.113273e-02	ci left: 1.024842e-01	ci right 1.078818e-01	k: 5258	n:50000
KS ci ratio: 7.820897e-02	ci left: 4.596593e-02	ci right 4.972679e-02	k: 2391	n:50000
NLRP3   50000 perm   19 sec   (2683 perm/sec)   p_kst 4.782000e-02   p_cons 1.051600e-01   p_joint 3.416000e-02

Outputting figure to mutsig2_images.part000000000115/NLRP3.39_3147_50000_0.04782_0.10516_0.03416.png
                gene_name: NLRP3
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 2 percent done.
NLRP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
Cons ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NLRP14   10000 perm   2 sec   (4881 perm/sec)   p_kst 1   p_cons 4.416000e-01   p_joint 9.447000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP14.26_3326_10000_1_0.4416_0.9447.png
                gene_name: NLRP14
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 4 percent done.
NLRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
NLRP5   10000 perm   3 sec   (3458 perm/sec)   p_kst 9.500000e-03   p_cons 3.790000e-02   p_joint 1.090000e-02

Joint ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
Cons ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
KS ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
NLRP5   20000 perm   6 sec   (3382 perm/sec)   p_kst 9.200000e-03   p_cons 4.350000e-02   p_joint 7.850000e-03

Joint ci ratio: 3.258763e-01	ci left: 4.018883e-03	ci right 5.612681e-03	k: 143	n:30000
Cons ci ratio: 1.074221e-01	ci left: 4.021255e-02	ci right 4.480992e-02	k: 1274	n:30000
KS ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
NLRP5   30000 perm   9 sec   (3321 perm/sec)   p_kst 9.333333e-03   p_cons 4.246667e-02   p_joint 4.766667e-03

Joint ci ratio: 3.698817e-01	ci left: 2.283367e-03	ci right 3.340868e-03	k: 111	n:40000
Cons ci ratio: 9.274612e-02	ci left: 4.076388e-02	ci right 4.475285e-02	k: 1709	n:40000
KS ci ratio: 2.062467e-01	ci left: 8.026618e-03	ci right 9.895715e-03	k: 357	n:40000
NLRP5   40000 perm   12 sec   (3270 perm/sec)   p_kst 8.925000e-03   p_cons 4.272500e-02   p_joint 2.775000e-03

Joint ci ratio: 2.070166e-01	ci left: 6.382787e-03	ci right 7.875297e-03	k: 355	n:50000
Cons ci ratio: 8.366265e-02	ci left: 4.029762e-02	ci right 4.383579e-02	k: 2102	n:50000
KS ci ratio: 1.829326e-01	ci left: 8.267170e-03	ci right 9.950565e-03	k: 454	n:50000
NLRP5   50000 perm   15 sec   (3241 perm/sec)   p_kst 9.080000e-03   p_cons 4.204000e-02   p_joint 7.100000e-03

Joint ci ratio: 2.001874e-01	ci left: 5.714213e-03	ci right 7.000903e-03	k: 380	n:60000
Cons ci ratio: 7.673269e-02	ci left: 4.008162e-02	ci right 4.329623e-02	k: 2500	n:60000
KS ci ratio: 1.663801e-01	ci left: 8.403602e-03	ci right 9.944436e-03	k: 549	n:60000
NLRP5   60000 perm   19 sec   (3211 perm/sec)   p_kst 9.150000e-03   p_cons 4.166667e-02   p_joint 6.333333e-03

Joint ci ratio: 2.010765e-01	ci left: 4.856971e-03	ci right 5.956068e-03	k: 377	n:70000
Cons ci ratio: 7.133249e-02	ci left: 3.987996e-02	ci right 4.284392e-02	k: 2894	n:70000
KS ci ratio: 1.529198e-01	ci left: 8.588442e-03	ci right 1.002410e-02	k: 650	n:70000
NLRP5   70000 perm   22 sec   (3180 perm/sec)   p_kst 9.285714e-03   p_cons 4.134286e-02   p_joint 5.385714e-03

Joint ci ratio: 1.938111e-01	ci left: 4.594371e-03	ci right 5.592039e-03	k: 406	n:80000
Cons ci ratio: 6.652201e-02	ci left: 4.021445e-02	ci right 4.299391e-02	k: 3327	n:80000
KS ci ratio: 1.422734e-01	ci left: 8.730853e-03	ci right 1.008008e-02	k: 751	n:80000
NLRP5   80000 perm   25 sec   (3147 perm/sec)   p_kst 9.387500e-03   p_cons 4.158750e-02   p_joint 5.075000e-03

Joint ci ratio: 1.915169e-01	ci left: 4.189551e-03	ci right 5.087281e-03	k: 416	n:90000
Cons ci ratio: 6.273507e-02	ci left: 4.027190e-02	ci right 4.289109e-02	k: 3741	n:90000
KS ci ratio: 1.335010e-01	ci left: 8.855059e-03	ci right 1.013241e-02	k: 853	n:90000
NLRP5   90000 perm   29 sec   (3113 perm/sec)   p_kst 9.477778e-03   p_cons 4.156667e-02   p_joint 4.622222e-03

Joint ci ratio: 1.126693e-01	ci left: 1.128571e-02	ci right 1.264282e-02	k: 1195	n:100000
Cons ci ratio: 5.915870e-02	ci left: 4.081435e-02	ci right 4.331230e-02	k: 4205	n:100000
KS ci ratio: 1.261738e-01	ci left: 8.956468e-03	ci right 1.017223e-02	k: 955	n:100000
NLRP5   100000 perm   32 sec   (3079 perm/sec)   p_kst 9.550000e-03   p_cons 4.205000e-02   p_joint 1.195000e-02

Joint ci ratio: 1.045519e-01	ci left: 1.195804e-02	ci right 1.328603e-02	k: 1387	n:110000
Cons ci ratio: 5.640308e-02	ci left: 4.087597e-02	ci right 4.325734e-02	k: 4626	n:110000
KS ci ratio: 1.209775e-01	ci left: 8.882258e-03	ci right 1.003474e-02	k: 1039	n:110000
NLRP5   110000 perm   36 sec   (3042 perm/sec)   p_kst 9.445455e-03   p_cons 4.205455e-02   p_joint 1.260909e-02

Joint ci ratio: 1.185221e-01	ci left: 8.497652e-03	ci right 9.576275e-03	k: 1083	n:120000
Cons ci ratio: 5.154812e-02	ci left: 4.478864e-02	ci right 4.716670e-02	k: 5516	n:120000
KS ci ratio: 1.163744e-01	ci left: 8.821277e-03	ci right 9.919297e-03	k: 1123	n:120000
NLRP5   120000 perm   40 sec   (3005 perm/sec)   p_kst 9.358333e-03   p_cons 4.596667e-02   p_joint 9.025000e-03

Joint ci ratio: 1.385142e-01	ci left: 5.698790e-03	ci right 6.554235e-03	k: 795	n:130000
Cons ci ratio: 4.962492e-02	ci left: 4.466230e-02	ci right 4.694263e-02	k: 5953	n:130000
KS ci ratio: 1.094588e-01	ci left: 9.234201e-03	ci right 1.031091e-02	k: 1269	n:130000
NLRP5   130000 perm   44 sec   (2970 perm/sec)   p_kst 9.761538e-03   p_cons 4.579231e-02   p_joint 6.115385e-03

Joint ci ratio: 1.367422e-01	ci left: 5.436517e-03	ci right 6.241300e-03	k: 816	n:140000
Cons ci ratio: 4.773403e-02	ci left: 4.485908e-02	ci right 4.705978e-02	k: 6433	n:140000
KS ci ratio: 1.057780e-01	ci left: 9.200161e-03	ci right 1.023458e-02	k: 1359	n:140000
NLRP5   140000 perm   48 sec   (2936 perm/sec)   p_kst 9.707143e-03   p_cons 4.595000e-02   p_joint 5.828571e-03

Joint ci ratio: 1.422088e-01	ci left: 4.681470e-03	ci right 5.404532e-03	k: 755	n:150000
Cons ci ratio: 4.616663e-02	ci left: 4.480028e-02	ci right 4.692399e-02	k: 6878	n:150000
KS ci ratio: 1.018440e-01	ci left: 9.281652e-03	ci right 1.028410e-02	k: 1466	n:150000
NLRP5   150000 perm   52 sec   (2901 perm/sec)   p_kst 9.773333e-03   p_cons 4.585333e-02   p_joint 5.033333e-03

Joint ci ratio: 1.437680e-01	ci left: 4.292393e-03	ci right 4.963251e-03	k: 739	n:160000
Cons ci ratio: 4.466112e-02	ci left: 4.491063e-02	ci right 4.696836e-02	k: 7349	n:160000
KS ci ratio: 9.850838e-02	ci left: 9.316992e-03	ci right 1.028839e-02	k: 1567	n:160000
NLRP5   160000 perm   56 sec   (2867 perm/sec)   p_kst 9.793750e-03   p_cons 4.593125e-02   p_joint 4.618750e-03

Joint ci ratio: 1.408544e-01	ci left: 4.215748e-03	ci right 4.860152e-03	k: 770	n:170000
Cons ci ratio: 4.337826e-02	ci left: 4.484017e-02	ci right 4.683418e-02	k: 7791	n:170000
KS ci ratio: 9.468155e-02	ci left: 9.509473e-03	ci right 1.046029e-02	k: 1696	n:170000
NLRP5   170000 perm   60 sec   (2836 perm/sec)   p_kst 9.976471e-03   p_cons 4.582941e-02   p_joint 4.529412e-03

Joint ci ratio: 1.422689e-01	ci left: 3.901112e-03	ci right 4.503917e-03	k: 755	n:180000
Cons ci ratio: 4.209558e-02	ci left: 4.499279e-02	ci right 4.693298e-02	k: 8272	n:180000
KS ci ratio: 9.226905e-02	ci left: 9.469471e-03	ci right 1.039086e-02	k: 1786	n:180000
NLRP5   180000 perm   64 sec   (2804 perm/sec)   p_kst 9.922222e-03   p_cons 4.595556e-02   p_joint 4.194444e-03

Joint ci ratio: 1.409801e-01	ci left: 3.766845e-03	ci right 4.343185e-03	k: 769	n:190000
Cons ci ratio: 4.100388e-02	ci left: 4.495291e-02	ci right 4.683992e-02	k: 8719	n:190000
KS ci ratio: 8.995943e-02	ci left: 9.449394e-03	ci right 1.034460e-02	k: 1879	n:190000
NLRP5   190000 perm   68 sec   (2774 perm/sec)   p_kst 9.889474e-03   p_cons 4.588947e-02   p_joint 4.047368e-03

Joint ci ratio: 1.015522e-01	ci left: 7.019296e-03	ci right 7.775087e-03	k: 1478	n:200000
Cons ci ratio: 4.192796e-02	ci left: 4.099634e-02	ci right 4.275697e-02	k: 8374	n:200000
KS ci ratio: 8.801797e-02	ci left: 9.387564e-03	ci right 1.025673e-02	k: 1963	n:200000
NLRP5   200000 perm   73 sec   (2744 perm/sec)   p_kst 9.815000e-03   p_cons 4.187000e-02   p_joint 7.390000e-03

Joint ci ratio: 1.003475e-01	ci left: 6.852115e-03	ci right 7.580635e-03	k: 1514	n:210000
Cons ci ratio: 4.090234e-02	ci left: 4.104701e-02	ci right 4.276567e-02	k: 8799	n:210000
KS ci ratio: 8.567048e-02	ci left: 9.448324e-03	ci right 1.029862e-02	k: 2072	n:210000
NLRP5   210000 perm   77 sec   (2712 perm/sec)   p_kst 9.866667e-03   p_cons 4.190000e-02   p_joint 7.209524e-03

Joint ci ratio: 1.198841e-01	ci left: 4.546324e-03	ci right 5.130476e-03	k: 1063	n:220000
Cons ci ratio: 4.197212e-02	ci left: 3.733536e-02	ci right 3.894047e-02	k: 8389	n:220000
KS ci ratio: 8.387090e-02	ci left: 9.419267e-03	ci right 1.024827e-02	k: 2162	n:220000
NLRP5   220000 perm   82 sec   (2682 perm/sec)   p_kst 9.827273e-03   p_cons 3.813182e-02   p_joint 4.831818e-03

Joint ci ratio: 1.183969e-01	ci left: 4.462539e-03	ci right 5.028314e-03	k: 1090	n:230000
Cons ci ratio: 4.104557e-02	ci left: 3.736003e-02	ci right 3.892990e-02	k: 8772	n:230000
KS ci ratio: 8.172348e-02	ci left: 9.499397e-03	ci right 1.031303e-02	k: 2277	n:230000
NLRP5   230000 perm   87 sec   (2652 perm/sec)   p_kst 9.900000e-03   p_cons 3.813913e-02   p_joint 4.739130e-03

Joint ci ratio: 1.177062e-01	ci left: 4.329149e-03	ci right 4.874588e-03	k: 1103	n:240000
Cons ci ratio: 4.011406e-02	ci left: 3.749853e-02	ci right 3.903764e-02	k: 9183	n:240000
KS ci ratio: 7.976662e-02	ci left: 9.564928e-03	ci right 1.036364e-02	k: 2390	n:240000
NLRP5   240000 perm   92 sec   (2623 perm/sec)   p_kst 9.958333e-03   p_cons 3.826250e-02   p_joint 4.595833e-03

Joint ci ratio: 1.157332e-01	ci left: 4.303542e-03	ci right 4.836044e-03	k: 1141	n:250000
Cons ci ratio: 3.931570e-02	ci left: 3.749161e-02	ci right 3.899912e-02	k: 9560	n:250000
KS ci ratio: 7.819665e-02	ci left: 9.562667e-03	ci right 1.034476e-02	k: 2487	n:250000
NLRP5   250000 perm   96 sec   (2597 perm/sec)   p_kst 9.948000e-03   p_cons 3.824000e-02   p_joint 4.564000e-03

Joint ci ratio: 1.153383e-01	ci left: 4.167885e-03	ci right 4.681720e-03	k: 1149	n:260000
Cons ci ratio: 3.854706e-02	ci left: 3.751599e-02	ci right 3.899433e-02	k: 9945	n:260000
KS ci ratio: 7.625538e-02	ci left: 9.677694e-03	ci right 1.044867e-02	k: 2615	n:260000
NLRP5   260000 perm   101 sec   (2568 perm/sec)   p_kst 1.005769e-02   p_cons 3.825000e-02   p_joint 4.419231e-03

Joint ci ratio: 1.151469e-01	ci left: 4.027889e-03	ci right 4.523585e-03	k: 1153	n:270000
Cons ci ratio: 3.779709e-02	ci left: 3.758654e-02	ci right 3.903821e-02	k: 10343	n:270000
KS ci ratio: 7.474125e-02	ci left: 9.708081e-03	ci right 1.046545e-02	k: 2722	n:270000
NLRP5   270000 perm   106 sec   (2541 perm/sec)   p_kst 1.008148e-02   p_cons 3.830741e-02   p_joint 4.270370e-03

Joint ci ratio: 1.151557e-01	ci left: 3.884020e-03	ci right 4.362048e-03	k: 1153	n:280000
Cons ci ratio: 3.719922e-02	ci left: 3.743639e-02	ci right 3.885890e-02	k: 10680	n:280000
KS ci ratio: 7.323549e-02	ci left: 9.757477e-03	ci right 1.050272e-02	k: 2835	n:280000
NLRP5   280000 perm   111 sec   (2515 perm/sec)   p_kst 1.012500e-02   p_cons 3.814286e-02   p_joint 4.117857e-03

Joint ci ratio: 1.169058e-01	ci left: 3.636222e-03	ci right 4.091023e-03	k: 1119	n:290000
Cons ci ratio: 3.654616e-02	ci left: 3.746083e-02	ci right 3.885876e-02	k: 11065	n:290000
KS ci ratio: 7.207692e-02	ci left: 9.732485e-03	ci right 1.046356e-02	k: 2927	n:290000
NLRP5   290000 perm   116 sec   (2490 perm/sec)   p_kst 1.009310e-02   p_cons 3.815517e-02   p_joint 3.858621e-03

Joint ci ratio: 1.171235e-01	ci left: 3.502057e-03	ci right 3.940949e-03	k: 1115	n:300000
Cons ci ratio: 3.593449e-02	ci left: 3.746733e-02	ci right 3.884161e-02	k: 11445	n:300000
KS ci ratio: 7.091237e-02	ci left: 9.725620e-03	ci right 1.044389e-02	k: 3024	n:300000
NLRP5   300000 perm   122 sec   (2465 perm/sec)   p_kst 1.008000e-02   p_cons 3.815000e-02   p_joint 3.716667e-03

Joint ci ratio: 1.154301e-01	ci left: 3.492442e-03	ci right 3.923369e-03	k: 1148	n:310000
Cons ci ratio: 3.534166e-02	ci left: 3.749598e-02	ci right 3.884816e-02	k: 11832	n:310000
KS ci ratio: 6.972358e-02	ci left: 9.741478e-03	ci right 1.044837e-02	k: 3128	n:310000
NLRP5   310000 perm   127 sec   (2441 perm/sec)   p_kst 1.009032e-02   p_cons 3.816774e-02   p_joint 3.703226e-03

Joint ci ratio: 1.029964e-01	ci left: 4.274079e-03	ci right 4.741214e-03	k: 1441	n:320000
Cons ci ratio: 3.477132e-02	ci left: 3.753540e-02	ci right 3.886673e-02	k: 12223	n:320000
KS ci ratio: 6.858193e-02	ci left: 9.759510e-03	ci right 1.045565e-02	k: 3233	n:320000
NLRP5   320000 perm   132 sec   (2418 perm/sec)   p_kst 1.010312e-02   p_cons 3.819687e-02   p_joint 4.503125e-03

Joint ci ratio: 1.019090e-01	ci left: 4.236090e-03	ci right 4.693891e-03	k: 1472	n:330000
Cons ci ratio: 3.424184e-02	ci left: 3.754255e-02	ci right 3.885345e-02	k: 12604	n:330000
KS ci ratio: 6.767911e-02	ci left: 9.722906e-03	ci right 1.040695e-02	k: 3320	n:330000
NLRP5   330000 perm   138 sec   (2396 perm/sec)   p_kst 1.006061e-02   p_cons 3.819394e-02   p_joint 4.460606e-03

Joint ci ratio: 1.024057e-01	ci left: 4.071357e-03	ci right 4.513628e-03	k: 1458	n:340000
Cons ci ratio: 3.374124e-02	ci left: 3.753775e-02	ci right 3.882896e-02	k: 12981	n:340000
KS ci ratio: 6.650615e-02	ci left: 9.778183e-03	ci right 1.045373e-02	k: 3438	n:340000
NLRP5   340000 perm   143 sec   (2373 perm/sec)   p_kst 1.011176e-02   p_cons 3.817941e-02   p_joint 4.288235e-03

Joint ci ratio: 1.038146e-01	ci left: 3.846454e-03	ci right 4.270393e-03	k: 1419	n:350000
Cons ci ratio: 3.325680e-02	ci left: 3.754470e-02	ci right 3.881725e-02	k: 13362	n:350000
KS ci ratio: 6.548518e-02	ci left: 9.802290e-03	ci right 1.046872e-02	k: 3546	n:350000
NLRP5   350000 perm   149 sec   (2350 perm/sec)   p_kst 1.013143e-02   p_cons 3.817714e-02   p_joint 4.054286e-03

Joint ci ratio: 1.028791e-01	ci left: 3.809960e-03	ci right 4.225864e-03	k: 1445	n:360000
Cons ci ratio: 3.282493e-02	ci left: 3.747974e-02	ci right 3.873327e-02	k: 13717	n:360000
KS ci ratio: 6.451874e-02	ci left: 9.822398e-03	ci right 1.047997e-02	k: 3653	n:360000
NLRP5   360000 perm   155 sec   (2329 perm/sec)   p_kst 1.014722e-02   p_cons 3.810278e-02   p_joint 4.013889e-03

Joint ci ratio: 1.014166e-01	ci left: 3.817602e-03	ci right 4.228063e-03	k: 1487	n:370000
Cons ci ratio: 3.240826e-02	ci left: 3.742107e-02	ci right 3.865645e-02	k: 14073	n:370000
KS ci ratio: 6.373956e-02	ci left: 9.796266e-03	ci right 1.044387e-02	k: 3743	n:370000
NLRP5   370000 perm   160 sec   (2307 perm/sec)   p_kst 1.011622e-02   p_cons 3.803514e-02   p_joint 4.018919e-03

Joint ci ratio: 1.001462e-01	ci left: 3.814618e-03	ci right 4.219319e-03	k: 1525	n:380000
Cons ci ratio: 3.195875e-02	ci left: 3.747526e-02	ci right 3.869496e-02	k: 14471	n:380000
KS ci ratio: 6.281439e-02	ci left: 9.825958e-03	ci right 1.046576e-02	k: 3854	n:380000
NLRP5   380000 perm   166 sec   (2285 perm/sec)   p_kst 1.014211e-02   p_cons 3.808158e-02   p_joint 4.013158e-03

Joint ci ratio: 9.904964e-02	ci left: 3.801814e-03	ci right 4.200483e-03	k: 1559	n:390000
Cons ci ratio: 3.156497e-02	ci left: 3.744026e-02	ci right 3.864354e-02	k: 14835	n:390000
KS ci ratio: 6.211853e-02	ci left: 9.793597e-03	ci right 1.042397e-02	k: 3941	n:390000
NLRP5   390000 perm   172 sec   (2263 perm/sec)   p_kst 1.010513e-02   p_cons 3.803846e-02   p_joint 3.997436e-03

Outputting figure to mutsig2_images.part000000000115/NLRP5.23_3663_390000_0.010105_0.038038_0.0039974.png
                gene_name: NLRP5
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0042 

Current progress: 5 percent done.
NLGN4X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
Cons ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
KS ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
NLGN4X   10000 perm   2 sec   (4162 perm/sec)   p_kst 7.020000e-02   p_cons 7.160000e-02   p_joint 4.490000e-02

Joint ci ratio: 1.442662e-01	ci left: 3.302649e-02	ci right 3.820965e-02	k: 711	n:20000
Cons ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
KS ci ratio: 1.018547e-01	ci left: 6.542758e-02	ci right 7.249836e-02	k: 1378	n:20000
NLGN4X   20000 perm   5 sec   (3845 perm/sec)   p_kst 6.890000e-02   p_cons 6.225000e-02   p_joint 3.555000e-02

Joint ci ratio: 1.378857e-01	ci left: 2.442185e-02	ci right 2.807068e-02	k: 786	n:30000
Cons ci ratio: 8.389662e-02	ci left: 6.498045e-02	ci right 7.070358e-02	k: 2034	n:30000
KS ci ratio: 8.247087e-02	ci left: 6.713787e-02	ci right 7.294573e-02	k: 2100	n:30000
NLGN4X   30000 perm   8 sec   (3729 perm/sec)   p_kst 7.000000e-02   p_cons 6.780000e-02   p_joint 2.620000e-02

Joint ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
Cons ci ratio: 7.227658e-02	ci left: 6.601886e-02	ci right 7.099401e-02	k: 2739	n:40000
KS ci ratio: 7.120824e-02	ci left: 6.791176e-02	ci right 7.295082e-02	k: 2816	n:40000
NLGN4X   40000 perm   11 sec   (3644 perm/sec)   p_kst 7.040000e-02   p_cons 6.847500e-02   p_joint 3.700000e-02

Outputting figure to mutsig2_images.part000000000115/NLGN4X.21_2471_40000_0.0704_0.068475_0.037.png
                gene_name: NLGN4X
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 7 percent done.
NLRP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
NLRP13   10000 perm   2 sec   (4254 perm/sec)   p_kst 1.340000e-02   p_cons 7.870000e-02   p_joint 7.080000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
KS ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
NLRP13   20000 perm   5 sec   (3915 perm/sec)   p_kst 1.400000e-02   p_cons 8.095000e-02   p_joint 1.590000e-02

Joint ci ratio: 1.188948e-01	ci left: 3.288409e-02	ci right 3.707326e-02	k: 1048	n:30000
Cons ci ratio: 7.616336e-02	ci left: 7.803490e-02	ci right 8.424650e-02	k: 2433	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
NLRP13   30000 perm   8 sec   (3778 perm/sec)   p_kst 1.376667e-02   p_cons 8.110000e-02   p_joint 3.493333e-02

Joint ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
Cons ci ratio: 6.587498e-02	ci left: 7.863972e-02	ci right 8.402125e-02	k: 3252	n:40000
KS ci ratio: 1.680191e-01	ci left: 1.229615e-02	ci right 1.457530e-02	k: 536	n:40000
NLRP13   40000 perm   11 sec   (3684 perm/sec)   p_kst 1.340000e-02   p_cons 8.130000e-02   p_joint 2.287500e-02

Joint ci ratio: 1.622458e-01	ci left: 1.060309e-02	ci right 1.249425e-02	k: 576	n:50000
Cons ci ratio: 6.028038e-02	ci left: 7.562452e-02	ci right 8.034462e-02	k: 3898	n:50000
KS ci ratio: 1.504233e-01	ci left: 1.239124e-02	ci right 1.442583e-02	k: 669	n:50000
NLRP13   50000 perm   14 sec   (3529 perm/sec)   p_kst 1.338000e-02   p_cons 7.796000e-02   p_joint 1.152000e-02

Joint ci ratio: 1.495809e-01	ci left: 1.046961e-02	ci right 1.217815e-02	k: 678	n:60000
Cons ci ratio: 5.469804e-02	ci left: 7.668917e-02	ci right 8.101834e-02	k: 4730	n:60000
KS ci ratio: 1.384562e-01	ci left: 1.226986e-02	ci right 1.411101e-02	k: 790	n:60000
NLRP13   60000 perm   17 sec   (3485 perm/sec)   p_kst 1.316667e-02   p_cons 7.883333e-02   p_joint 1.130000e-02

Joint ci ratio: 1.233223e-01	ci left: 1.335042e-02	ci right 1.511876e-02	k: 995	n:70000
Cons ci ratio: 5.079310e-02	ci left: 7.641910e-02	ci right 8.041593e-02	k: 5488	n:70000
KS ci ratio: 1.278935e-01	ci left: 1.239527e-02	ci right 1.410257e-02	k: 926	n:70000
NLRP13   70000 perm   21 sec   (3395 perm/sec)   p_kst 1.322857e-02   p_cons 7.840000e-02   p_joint 1.421429e-02

Joint ci ratio: 1.244497e-01	ci left: 1.148712e-02	ci right 1.302356e-02	k: 979	n:80000
Cons ci ratio: 4.756260e-02	ci left: 7.639804e-02	ci right 8.013261e-02	k: 6260	n:80000
KS ci ratio: 1.202927e-01	ci left: 1.231141e-02	ci right 1.389919e-02	k: 1047	n:80000
NLRP13   80000 perm   24 sec   (3324 perm/sec)   p_kst 1.308750e-02   p_cons 7.825000e-02   p_joint 1.223750e-02

Joint ci ratio: 1.049421e-01	ci left: 1.446489e-02	ci right 1.607768e-02	k: 1373	n:90000
Cons ci ratio: 4.479979e-02	ci left: 7.664093e-02	ci right 8.016408e-02	k: 7055	n:90000
KS ci ratio: 1.129289e-01	ci left: 1.246453e-02	ci right 1.396709e-02	k: 1188	n:90000
NLRP13   90000 perm   27 sec   (3285 perm/sec)   p_kst 1.320000e-02   p_cons 7.838889e-02   p_joint 1.525556e-02

Joint ci ratio: 1.047532e-01	ci left: 1.308607e-02	ci right 1.454233e-02	k: 1380	n:100000
Cons ci ratio: 4.229919e-02	ci left: 7.741462e-02	ci right 8.076984e-02	k: 7908	n:100000
KS ci ratio: 1.074271e-01	ci left: 1.243363e-02	ci right 1.385482e-02	k: 1313	n:100000
NLRP13   100000 perm   31 sec   (3248 perm/sec)   p_kst 1.313000e-02   p_cons 7.908000e-02   p_joint 1.380000e-02

Joint ci ratio: 9.499082e-02	ci left: 1.452075e-02	ci right 1.597770e-02	k: 1676	n:110000
Cons ci ratio: 4.031034e-02	ci left: 7.756566e-02	ci right 8.076566e-02	k: 8707	n:110000
KS ci ratio: 1.025501e-01	ci left: 1.243639e-02	ci right 1.378947e-02	k: 1441	n:110000
NLRP13   110000 perm   34 sec   (3210 perm/sec)   p_kst 1.310000e-02   p_cons 7.915455e-02   p_joint 1.523636e-02

Joint ci ratio: 9.598515e-02	ci left: 1.304991e-02	ci right 1.437374e-02	k: 1644	n:120000
Cons ci ratio: 3.861550e-02	ci left: 7.755419e-02	ci right 8.061619e-02	k: 9489	n:120000
KS ci ratio: 9.815555e-02	ci left: 1.247243e-02	ci right 1.376793e-02	k: 1573	n:120000
NLRP13   120000 perm   38 sec   (3171 perm/sec)   p_kst 1.310833e-02   p_cons 7.907500e-02   p_joint 1.370000e-02

Outputting figure to mutsig2_images.part000000000115/NLRP13.21_3174_120000_0.013108_0.079075_0.0137.png
                gene_name: NLRP13
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 9 percent done.
NLRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
Cons ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
KS ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
NLRP4   10000 perm   2 sec   (4276 perm/sec)   p_kst 3.603000e-01   p_cons 6.437000e-01   p_joint 5.666000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP4.19_3021_10000_0.3603_0.6437_0.5666.png
                gene_name: NLRP4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 11 percent done.
NLGN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
NLGN1   10000 perm   2 sec   (4498 perm/sec)   p_kst 4.020000e-01   p_cons 5.234000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN1.17_2492_10000_0.402_0.5234_0.5394.png
                gene_name: NLGN1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 13 percent done.
NLRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
NLRP12   10000 perm   2 sec   (4477 perm/sec)   p_kst 5.661000e-01   p_cons 6.010000e-02   p_joint 1.702000e-01

Joint ci ratio: 7.162618e-02	ci left: 1.255651e-01	ci right 1.349427e-01	k: 2604	n:20000
Cons ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
KS ci ratio: 2.456586e-02	ci left: 5.531373e-01	ci right 5.669452e-01	k: 11201	n:20000
NLRP12   20000 perm   5 sec   (4083 perm/sec)   p_kst 5.600500e-01   p_cons 6.100000e-02   p_joint 1.302000e-01

Joint ci ratio: 5.192059e-02	ci left: 1.555052e-01	ci right 1.638275e-01	k: 4789	n:30000
Cons ci ratio: 8.414083e-02	ci left: 6.462097e-02	ci right 7.032981e-02	k: 2023	n:30000
KS ci ratio: 2.004819e-02	ci left: 5.546611e-01	ci right 5.659272e-01	k: 16809	n:30000
NLRP12   30000 perm   8 sec   (3948 perm/sec)   p_kst 5.603000e-01   p_cons 6.743333e-02   p_joint 1.596333e-01

Outputting figure to mutsig2_images.part000000000115/NLRP12.16_3322_30000_0.5603_0.067433_0.15963.png
                gene_name: NLRP12
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
NLRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
Cons ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
KS ci ratio: 4.185486e-02	ci left: 4.573820e-01	ci right 4.770371e-01	k: 4672	n:10000
NLRP8   10000 perm   2 sec   (4417 perm/sec)   p_kst 4.672000e-01   p_cons 4.749000e-01   p_joint 6.795000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP8.15_3187_10000_0.4672_0.4749_0.6795.png
                gene_name: NLRP8
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 16 percent done.
NLRP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
Cons ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
KS ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
NLRP7   10000 perm   2 sec   (4278 perm/sec)   p_kst 2.041000e-01   p_cons 5.019000e-01   p_joint 3.057000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP7.14_3154_10000_0.2041_0.5019_0.3057.png
                gene_name: NLRP7
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 18 percent done.
NMUR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
NMUR2   10000 perm   2 sec   (5831 perm/sec)   p_kst 6.900000e-02   p_cons 2.545000e-01   p_joint 8.860000e-02

Joint ci ratio: 8.676735e-02	ci left: 8.856807e-02	ci right 9.665082e-02	k: 1851	n:20000
Cons ci ratio: 4.699444e-02	ci left: 2.519963e-01	ci right 2.641741e-01	k: 5161	n:20000
KS ci ratio: 1.009147e-01	ci left: 6.659926e-02	ci right 7.372632e-02	k: 1402	n:20000
NMUR2   20000 perm   4 sec   (5538 perm/sec)   p_kst 7.010000e-02   p_cons 2.580500e-01   p_joint 9.255000e-02

Joint ci ratio: 6.348171e-02	ci left: 1.091755e-01	ci right 1.163664e-01	k: 3382	n:30000
Cons ci ratio: 3.944169e-02	ci left: 2.427900e-01	ci right 2.525922e-01	k: 7430	n:30000
KS ci ratio: 8.334871e-02	ci left: 6.579756e-02	ci right 7.155298e-02	k: 2059	n:30000
NMUR2   30000 perm   6 sec   (5412 perm/sec)   p_kst 6.863333e-02   p_cons 2.476667e-01   p_joint 1.127333e-01

Outputting figure to mutsig2_images.part000000000115/NMUR2.11_1264_30000_0.068633_0.24767_0.11273.png
                gene_name: NMUR2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
NLRC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
Cons ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
KS ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
NLRC5   10000 perm   2 sec   (4441 perm/sec)   p_kst 4.514000e-01   p_cons 4.523000e-01   p_joint 6.385000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC5.10_5789_10000_0.4514_0.4523_0.6385.png
                gene_name: NLRC5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 22 percent done.
NLRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
Cons ci ratio: 9.617167e-03	ci left: 9.385866e-01	ci right 9.477531e-01	k: 9433	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
NLRP10   10000 perm   2 sec   (4512 perm/sec)   p_kst 1.460000e-01   p_cons 9.433000e-01   p_joint 3.211000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP10.10_1976_10000_0.146_0.9433_0.3211.png
                gene_name: NLRP10
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 24 percent done.
NLRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NLRP2   10000 perm   2 sec   (5324 perm/sec)   p_kst 1   p_cons 2.810000e-02   p_joint 1.152000e-01

Joint ci ratio: 7.679852e-02	ci left: 1.108065e-01	ci right 1.197057e-01	k: 2304	n:20000
Cons ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
NLRP2   20000 perm   4 sec   (4791 perm/sec)   p_kst 1   p_cons 2.965000e-02   p_joint 1.152000e-01

Joint ci ratio: 6.376888e-02	ci left: 1.082881e-01	ci right 1.154540e-01	k: 3355	n:30000
Cons ci ratio: 1.308024e-01	ci left: 2.716245e-02	ci right 3.099614e-02	k: 871	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
NLRP2   30000 perm   7 sec   (4393 perm/sec)   p_kst 1   p_cons 2.903333e-02   p_joint 1.118333e-01

Joint ci ratio: 6.540557e-02	ci left: 7.969857e-02	ci right 8.511224e-02	k: 3295	n:40000
Cons ci ratio: 1.179964e-01	ci left: 2.526355e-02	ci right 2.845564e-02	k: 1073	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
NLRP2   40000 perm   9 sec   (4290 perm/sec)   p_kst 1   p_cons 2.682500e-02   p_joint 8.237500e-02

Joint ci ratio: 5.920825e-02	ci left: 7.820860e-02	ci right 8.300023e-02	k: 4029	n:50000
Cons ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
KS ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
NLRP2   50000 perm   12 sec   (4197 perm/sec)   p_kst 1   p_cons 2.656000e-02   p_joint 8.058000e-02

Joint ci ratio: 4.683872e-02	ci left: 1.020796e-01	ci right 1.069921e-01	k: 6271	n:60000
Cons ci ratio: 9.307070e-02	ci left: 2.737855e-02	ci right 3.006729e-02	k: 1722	n:60000
KS ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
NLRP2   60000 perm   15 sec   (4127 perm/sec)   p_kst 1   p_cons 2.870000e-02   p_joint 1.045167e-01

Outputting figure to mutsig2_images.part000000000115/NLRP2.10_3237_60000_1_0.0287_0.10452.png
                gene_name: NLRP2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 25 percent done.
NKTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
Cons ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
NKTR   10000 perm   2 sec   (4194 perm/sec)   p_kst 3.038000e-01   p_cons 5.717000e-01   p_joint 4.304000e-01

Outputting figure to mutsig2_images.part000000000115/NKTR.7_4453_10000_0.3038_0.5717_0.4304.png
                gene_name: NKTR
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 27 percent done.
NLRC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
Cons ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
KS ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
NLRC4   10000 perm   2 sec   (5009 perm/sec)   p_kst 3.030000e-01   p_cons 3.625000e-01   p_joint 5.019000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC4.7_3107_10000_0.303_0.3625_0.5019.png
                gene_name: NLRC4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
NLRP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
Cons ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
NLRP11   10000 perm   2 sec   (4834 perm/sec)   p_kst 1.919000e-01   p_cons 6.213000e-01   p_joint 4.129000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP11.7_3138_10000_0.1919_0.6213_0.4129.png
                gene_name: NLRP11
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 31 percent done.
NLRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
Cons ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
KS ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
NLRX1   10000 perm   2 sec   (4755 perm/sec)   p_kst 4.093000e-01   p_cons 3.025000e-01   p_joint 4.415000e-01

Outputting figure to mutsig2_images.part000000000115/NLRX1.7_3128_10000_0.4093_0.3025_0.4415.png
                gene_name: NLRX1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 33 percent done.
NOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
Cons ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
KS ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
NOD2   10000 perm   2 sec   (4842 perm/sec)   p_kst 2.242000e-01   p_cons 7.269000e-01   p_joint 4.183000e-01

Outputting figure to mutsig2_images.part000000000115/NOD2.7_3171_10000_0.2242_0.7269_0.4183.png
                gene_name: NOD2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
NKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
KS ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
NKD1   10000 perm   2 sec   (5775 perm/sec)   p_kst 3.996000e-01   p_cons 5.092000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000115/NKD1.6_1453_10000_0.3996_0.5092_0.5107.png
                gene_name: NKD1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 36 percent done.
NLRP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
KS ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
NLRP9   10000 perm   2 sec   (4932 perm/sec)   p_kst 2.640000e-02   p_cons 8.430000e-01   p_joint 7.050000e-02

Joint ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
Cons ci ratio: 1.194015e-02	ci left: 8.383897e-01	ci right 8.485102e-01	k: 16870	n:20000
KS ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
NLRP9   20000 perm   4 sec   (4488 perm/sec)   p_kst 2.675000e-02   p_cons 8.435000e-01   p_joint 6.420000e-02

Joint ci ratio: 8.447700e-02	ci left: 6.413080e-02	ci right 6.982008e-02	k: 2008	n:30000
Cons ci ratio: 9.820188e-03	ci left: 8.373850e-01	ci right 8.456821e-01	k: 25247	n:30000
KS ci ratio: 1.389777e-01	ci left: 2.403537e-02	ci right 2.765724e-02	k: 774	n:30000
NLRP9   30000 perm   7 sec   (4290 perm/sec)   p_kst 2.580000e-02   p_cons 8.415667e-01   p_joint 6.693333e-02

Joint ci ratio: 7.229074e-02	ci left: 6.599428e-02	ci right 7.096859e-02	k: 2738	n:40000
Cons ci ratio: 8.481859e-03	ci left: 8.386658e-01	ci right 8.458344e-01	k: 33691	n:40000
KS ci ratio: 1.196082e-01	ci left: 2.458383e-02	ci right 2.773547e-02	k: 1045	n:40000
NLRP9   40000 perm   10 sec   (4165 perm/sec)   p_kst 2.612500e-02   p_cons 8.422750e-01   p_joint 6.845000e-02

Joint ci ratio: 6.616249e-02	ci left: 6.342547e-02	ci right 6.778513e-02	k: 3279	n:50000
Cons ci ratio: 7.545069e-03	ci left: 8.405072e-01	ci right 8.468928e-01	k: 42186	n:50000
KS ci ratio: 1.066258e-01	ci left: 2.491489e-02	ci right 2.774047e-02	k: 1315	n:50000
NLRP9   50000 perm   12 sec   (4070 perm/sec)   p_kst 2.630000e-02   p_cons 8.437200e-01   p_joint 6.558000e-02

Joint ci ratio: 5.866972e-02	ci left: 6.721468e-02	ci right 7.129377e-02	k: 4154	n:60000
Cons ci ratio: 6.883818e-03	ci left: 8.409373e-01	ci right 8.467627e-01	k: 50632	n:60000
KS ci ratio: 9.693300e-02	ci left: 2.524570e-02	ci right 2.783370e-02	k: 1591	n:60000
NLRP9   60000 perm   15 sec   (3985 perm/sec)   p_kst 2.651667e-02   p_cons 8.438667e-01   p_joint 6.923333e-02

Outputting figure to mutsig2_images.part000000000115/NLRP9.6_3012_60000_0.026517_0.84387_0.069233.png
                gene_name: NLRP9
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 38 percent done.
NMBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
NMBR   10000 perm   2 sec   (5637 perm/sec)   p_kst 1.133000e-01   p_cons 6.524000e-01   p_joint 2.466000e-01

Joint ci ratio: 5.417794e-02	ci left: 2.017988e-01	ci right 2.130864e-01	k: 4148	n:20000
Cons ci ratio: 2.078350e-02	ci left: 6.334031e-01	ci right 6.467562e-01	k: 12802	n:20000
KS ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
NMBR   20000 perm   4 sec   (5070 perm/sec)   p_kst 1.162500e-01   p_cons 6.401000e-01   p_joint 2.074000e-01

Outputting figure to mutsig2_images.part000000000115/NMBR.6_1185_20000_0.11625_0.6401_0.2074.png
                gene_name: NMBR
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 40 percent done.
NKAPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
Cons ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
KS ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
NKAPL   10000 perm   2 sec   (5555 perm/sec)   p_kst 5.489000e-01   p_cons 8.295000e-01   p_joint 8.066000e-01

Outputting figure to mutsig2_images.part000000000115/NKAPL.5_1213_10000_0.5489_0.8295_0.8066.png
                gene_name: NKAPL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 42 percent done.
NKRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
Cons ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KS ci ratio: 1.238473e-02	ci left: 9.035015e-01	ci right 9.148589e-01	k: 9093	n:10000
NKRF   10000 perm   2 sec   (5498 perm/sec)   p_kst 9.093000e-01   p_cons 2.295000e-01   p_joint 4.669000e-01

Outputting figure to mutsig2_images.part000000000115/NKRF.5_2130_10000_0.9093_0.2295_0.4669.png
                gene_name: NKRF
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 44 percent done.
NLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
Cons ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
NLN   10000 perm   2 sec   (5077 perm/sec)   p_kst 5.941000e-01   p_cons 6.199000e-01   p_joint 6.627000e-01

Outputting figure to mutsig2_images.part000000000115/NLN.5_2167_10000_0.5941_0.6199_0.6627.png
                gene_name: NLN
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 45 percent done.
NLRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
Cons ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
KS ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
NLRP1   10000 perm   2 sec   (5023 perm/sec)   p_kst 7.808000e-01   p_cons 3.833000e-01   p_joint 7.079000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP1.5_4565_10000_0.7808_0.3833_0.7079.png
                gene_name: NLRP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 47 percent done.
NNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.094934e-03	ci left: 9.870846e-01	ci right 9.912230e-01	k: 9893	n:10000
KS ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
NNMT   10000 perm   2 sec   (5915 perm/sec)   p_kst 8.733000e-01   p_cons 9.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NNMT.5_807_10000_0.8733_0.9893_1.png
                gene_name: NNMT
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
NKAIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
KS ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
NKAIN2   10000 perm   2 sec   (6081 perm/sec)   p_kst 9.416000e-01   p_cons 5.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKAIN2.4_655_10000_0.9416_0.5896_1.png
                gene_name: NKAIN2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
NKX6-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
NKX6-1   10000 perm   2 sec   (5987 perm/sec)   p_kst 1.071000e-01   p_cons 5.500000e-02   p_joint 9.280000e-02

Joint ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
Cons ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
KS ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
NKX6-1   20000 perm   4 sec   (5371 perm/sec)   p_kst 1.056500e-01   p_cons 5.140000e-02   p_joint 3.860000e-02

Joint ci ratio: 1.022911e-01	ci left: 4.427469e-02	ci right 4.908026e-02	k: 1399	n:30000
Cons ci ratio: 9.712567e-02	ci left: 4.899332e-02	ci right 5.402732e-02	k: 1544	n:30000
KS ci ratio: 6.667965e-02	ci left: 9.984504e-02	ci right 1.067653e-01	k: 3098	n:30000
NKX6-1   30000 perm   6 sec   (5117 perm/sec)   p_kst 1.032667e-01   p_cons 5.146667e-02   p_joint 4.663333e-02

Joint ci ratio: 8.272565e-02	ci left: 5.094707e-02	ci right 5.536808e-02	k: 2125	n:40000
Cons ci ratio: 8.360142e-02	ci left: 4.991777e-02	ci right 5.429754e-02	k: 2083	n:40000
KS ci ratio: 5.646707e-02	ci left: 1.044806e-01	ci right 1.105765e-01	k: 4300	n:40000
NKX6-1   40000 perm   8 sec   (4951 perm/sec)   p_kst 1.075000e-01   p_cons 5.207500e-02   p_joint 5.312500e-02

Outputting figure to mutsig2_images.part000000000115/NKX6-1.4_1116_40000_0.1075_0.052075_0.053125.png
                gene_name: NKX6-1
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 53 percent done.
NLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
Cons ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
NLE1   10000 perm   2 sec   (5555 perm/sec)   p_kst 1.900000e-03   p_cons 2.079000e-01   p_joint 4.800000e-03

Joint ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
Cons ci ratio: 5.231376e-02	ci left: 2.134331e-01	ci right 2.249487e-01	k: 4383	n:20000
KS ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
NLE1   20000 perm   4 sec   (4948 perm/sec)   p_kst 1.550000e-03   p_cons 2.191500e-01   p_joint 1.950000e-03

Joint ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
Cons ci ratio: 4.285189e-02	ci left: 2.134048e-01	ci right 2.227832e-01	k: 6542	n:30000
KS ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
NLE1   30000 perm   6 sec   (4768 perm/sec)   p_kst 1.233333e-03   p_cons 2.180667e-01   p_joint 1.233333e-03

Joint ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
Cons ci ratio: 3.819949e-02	ci left: 2.044036e-01	ci right 2.123888e-01	k: 8335	n:40000
KS ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
NLE1   40000 perm   9 sec   (4648 perm/sec)   p_kst 1.500000e-03   p_cons 2.083750e-01   p_joint 1.500000e-03

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 3.400803e-02	ci left: 2.063573e-01	ci right 2.135164e-01	k: 10496	n:50000
KS ci ratio: 4.522985e-01	ci left: 1.162291e-03	ci right 1.857653e-03	k: 74	n:50000
NLE1   50000 perm   11 sec   (4546 perm/sec)   p_kst 1.480000e-03   p_cons 2.099200e-01   p_joint 1.340000e-03

Joint ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
Cons ci ratio: 3.110498e-02	ci left: 2.060341e-01	ci right 2.125607e-01	k: 12557	n:60000
KS ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
NLE1   60000 perm   13 sec   (4448 perm/sec)   p_kst 1.483333e-03   p_cons 2.092833e-01   p_joint 4.100000e-03

Joint ci ratio: 2.426545e-01	ci left: 3.263761e-03	ci right 4.178137e-03	k: 259	n:70000
Cons ci ratio: 2.880012e-02	ci left: 2.062487e-01	ci right 2.122897e-01	k: 14648	n:70000
KS ci ratio: 3.502998e-01	ci left: 1.473592e-03	ci right 2.111702e-03	k: 124	n:70000
NLE1   70000 perm   16 sec   (4341 perm/sec)   p_kst 1.771429e-03   p_cons 2.092571e-01   p_joint 3.700000e-03

Joint ci ratio: 1.940508e-01	ci left: 4.582475e-03	ci right 5.578936e-03	k: 405	n:80000
Cons ci ratio: 2.698053e-02	ci left: 2.059505e-01	ci right 2.115956e-01	k: 16701	n:80000
KS ci ratio: 3.358493e-01	ci left: 1.415043e-03	ci right 1.997051e-03	k: 135	n:80000
NLE1   80000 perm   19 sec   (4258 perm/sec)   p_kst 1.687500e-03   p_cons 2.087625e-01   p_joint 5.062500e-03

Joint ci ratio: 1.333434e-01	ci left: 8.876546e-03	ci right 1.015537e-02	k: 855	n:90000
Cons ci ratio: 2.543985e-02	ci left: 2.060821e-01	ci right 2.114034e-01	k: 18786	n:90000
KS ci ratio: 3.219552e-01	ci left: 1.380140e-03	ci right 1.919465e-03	k: 147	n:90000
NLE1   90000 perm   21 sec   (4189 perm/sec)   p_kst 1.633333e-03   p_cons 2.087333e-01   p_joint 9.500000e-03

Joint ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
Cons ci ratio: 2.413396e-02	ci left: 2.062246e-01	ci right 2.112723e-01	k: 20874	n:100000
KS ci ratio: 3.039969e-01	ci left: 1.408003e-03	ci right 1.921596e-03	k: 165	n:100000
NLE1   100000 perm   24 sec   (4106 perm/sec)   p_kst 1.650000e-03   p_cons 2.087400e-01   p_joint 7.160000e-03

Joint ci ratio: 1.553564e-01	ci left: 5.307335e-03	ci right 6.209932e-03	k: 632	n:110000
Cons ci ratio: 2.300799e-02	ci left: 2.063831e-01	ci right 2.111959e-01	k: 22966	n:110000
KS ci ratio: 2.969380e-01	ci left: 1.347242e-03	ci right 1.825110e-03	k: 173	n:110000
NLE1   110000 perm   27 sec   (4030 perm/sec)   p_kst 1.572727e-03   p_cons 2.087818e-01   p_joint 5.745455e-03

Joint ci ratio: 1.555174e-01	ci left: 4.856959e-03	ci right 5.683893e-03	k: 631	n:120000
Cons ci ratio: 2.200290e-02	ci left: 2.068684e-01	ci right 2.114790e-01	k: 25100	n:120000
KS ci ratio: 2.841603e-01	ci left: 1.358593e-03	ci right 1.816036e-03	k: 189	n:120000
NLE1   120000 perm   30 sec   (3956 perm/sec)   p_kst 1.575000e-03   p_cons 2.091667e-01   p_joint 5.258333e-03

Joint ci ratio: 1.730688e-01	ci left: 3.590526e-03	ci right 4.278046e-03	k: 510	n:130000
Cons ci ratio: 2.116616e-02	ci left: 2.065472e-01	ci right 2.109734e-01	k: 27138	n:130000
KS ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
NLE1   130000 perm   33 sec   (3890 perm/sec)   p_kst 1.530769e-03   p_cons 2.087538e-01   p_joint 3.923077e-03

Joint ci ratio: 1.665164e-01	ci left: 3.614479e-03	ci right 4.277755e-03	k: 551	n:140000
Cons ci ratio: 2.037271e-02	ci left: 2.070078e-01	ci right 2.112756e-01	k: 29279	n:140000
KS ci ratio: 2.677598e-01	ci left: 1.324082e-03	ci right 1.739859e-03	k: 213	n:140000
NLE1   140000 perm   37 sec   (3827 perm/sec)   p_kst 1.521429e-03   p_cons 2.091357e-01   p_joint 3.935714e-03

Joint ci ratio: 1.340730e-01	ci left: 5.286602e-03	ci right 6.052696e-03	k: 849	n:150000
Cons ci ratio: 1.967336e-02	ci left: 2.072237e-01	ci right 2.113476e-01	k: 31392	n:150000
KS ci ratio: 2.588422e-01	ci left: 1.329212e-03	ci right 1.730452e-03	k: 228	n:150000
NLE1   150000 perm   40 sec   (3768 perm/sec)   p_kst 1.520000e-03   p_cons 2.092800e-01   p_joint 5.660000e-03

Joint ci ratio: 1.482632e-01	ci left: 4.027397e-03	ci right 4.678264e-03	k: 695	n:160000
Cons ci ratio: 1.905904e-02	ci left: 2.071095e-01	ci right 2.111010e-01	k: 33456	n:160000
KS ci ratio: 2.517957e-01	ci left: 1.322187e-03	ci right 1.708737e-03	k: 241	n:160000
NLE1   160000 perm   43 sec   (3713 perm/sec)   p_kst 1.506250e-03   p_cons 2.091000e-01   p_joint 4.343750e-03

Joint ci ratio: 1.457797e-01	ci left: 3.926459e-03	ci right 4.549458e-03	k: 719	n:170000
Cons ci ratio: 1.848343e-02	ci left: 2.072861e-01	ci right 2.111591e-01	k: 35567	n:170000
KS ci ratio: 2.448147e-01	ci left: 1.321641e-03	ci right 1.695690e-03	k: 255	n:170000
NLE1   170000 perm   47 sec   (3656 perm/sec)   p_kst 1.500000e-03   p_cons 2.092176e-01   p_joint 4.229412e-03

Joint ci ratio: 1.545543e-01	ci left: 3.285825e-03	ci right 3.841464e-03	k: 640	n:180000
Cons ci ratio: 1.795490e-02	ci left: 2.074835e-01	ci right 2.112481e-01	k: 37685	n:180000
KS ci ratio: 2.370686e-01	ci left: 1.336962e-03	ci right 1.701618e-03	k: 272	n:180000
NLE1   180000 perm   50 sec   (3603 perm/sec)   p_kst 1.511111e-03   p_cons 2.093611e-01   p_joint 3.555556e-03

Joint ci ratio: 1.623797e-01	ci left: 2.809556e-03	ci right 3.311059e-03	k: 580	n:190000
Cons ci ratio: 1.747426e-02	ci left: 2.075670e-01	ci right 2.112313e-01	k: 39785	n:190000
KS ci ratio: 2.312149e-01	ci left: 1.335957e-03	ci right 1.690058e-03	k: 286	n:190000
NLE1   190000 perm   54 sec   (3543 perm/sec)   p_kst 1.505263e-03   p_cons 2.093947e-01   p_joint 3.052632e-03

Joint ci ratio: 1.683054e-01	ci left: 2.477315e-03	ci right 2.937287e-03	k: 540	n:200000
Cons ci ratio: 1.702975e-02	ci left: 2.076534e-01	ci right 2.112250e-01	k: 41887	n:200000
KS ci ratio: 2.246559e-01	ci left: 1.349308e-03	ci right 1.695398e-03	k: 303	n:200000
NLE1   200000 perm   57 sec   (3490 perm/sec)   p_kst 1.515000e-03   p_cons 2.094350e-01   p_joint 2.700000e-03

Joint ci ratio: 1.798478e-01	ci left: 2.054144e-03	ci right 2.464550e-03	k: 473	n:210000
Cons ci ratio: 1.661154e-02	ci left: 2.078513e-01	ci right 2.113377e-01	k: 44014	n:210000
KS ci ratio: 2.200024e-01	ci left: 1.343512e-03	ci right 1.680012e-03	k: 316	n:210000
NLE1   210000 perm   61 sec   (3440 perm/sec)   p_kst 1.504762e-03   p_cons 2.095905e-01   p_joint 2.252381e-03

Joint ci ratio: 1.747580e-01	ci left: 2.082402e-03	ci right 2.485436e-03	k: 501	n:220000
Cons ci ratio: 1.623050e-02	ci left: 2.078736e-01	ci right 2.112795e-01	k: 46106	n:220000
KS ci ratio: 2.149751e-01	ci left: 1.346912e-03	ci right 1.675537e-03	k: 331	n:220000
NLE1   220000 perm   65 sec   (3392 perm/sec)   p_kst 1.504545e-03   p_cons 2.095727e-01   p_joint 2.277273e-03

Joint ci ratio: 1.715433e-01	ci left: 2.070890e-03	ci right 2.463561e-03	k: 520	n:230000
Cons ci ratio: 1.588370e-02	ci left: 2.077040e-01	ci right 2.110338e-01	k: 48154	n:230000
KS ci ratio: 2.111937e-01	ci left: 1.337740e-03	ci right 1.657643e-03	k: 343	n:230000
NLE1   230000 perm   69 sec   (3345 perm/sec)   p_kst 1.491304e-03   p_cons 2.093652e-01   p_joint 2.260870e-03

Joint ci ratio: 1.692870e-01	ci left: 2.040446e-03	ci right 2.421735e-03	k: 534	n:240000
Cons ci ratio: 1.555391e-02	ci left: 2.076407e-01	ci right 2.108997e-01	k: 50224	n:240000
KS ci ratio: 2.084866e-01	ci left: 1.317529e-03	ci right 1.628044e-03	k: 352	n:240000
NLE1   240000 perm   73 sec   (3298 perm/sec)   p_kst 1.466667e-03   p_cons 2.092667e-01   p_joint 2.225000e-03

Joint ci ratio: 1.665106e-01	ci left: 2.027801e-03	ci right 2.399890e-03	k: 552	n:250000
Cons ci ratio: 1.523390e-02	ci left: 2.077985e-01	ci right 2.109923e-01	k: 52348	n:250000
KS ci ratio: 2.047512e-01	ci left: 1.314137e-03	ci right 1.617610e-03	k: 365	n:250000
NLE1   250000 perm   77 sec   (3255 perm/sec)   p_kst 1.460000e-03   p_cons 2.093920e-01   p_joint 2.208000e-03

Joint ci ratio: 1.765596e-01	ci left: 1.725233e-03	ci right 2.062948e-03	k: 491	n:260000
Cons ci ratio: 1.492557e-02	ci left: 2.081058e-01	ci right 2.112391e-01	k: 54514	n:260000
KS ci ratio: 2.009444e-01	ci left: 1.314705e-03	ci right 1.611971e-03	k: 379	n:260000
NLE1   260000 perm   81 sec   (3212 perm/sec)   p_kst 1.457692e-03   p_cons 2.096692e-01   p_joint 1.888462e-03

Joint ci ratio: 1.735868e-01	ci left: 1.721539e-03	ci right 2.052262e-03	k: 508	n:270000
Cons ci ratio: 1.463475e-02	ci left: 2.084021e-01	ci right 2.114782e-01	k: 56683	n:270000
KS ci ratio: 1.975935e-01	ci left: 1.311758e-03	ci right 1.602816e-03	k: 392	n:270000
NLE1   270000 perm   85 sec   (3167 perm/sec)   p_kst 1.451852e-03   p_cons 2.099370e-01   p_joint 1.881481e-03

Joint ci ratio: 1.710854e-01	ci left: 1.711316e-03	ci right 2.034848e-03	k: 523	n:280000
Cons ci ratio: 1.436801e-02	ci left: 2.084997e-01	ci right 2.115206e-01	k: 58802	n:280000
KS ci ratio: 1.927479e-01	ci left: 1.332849e-03	ci right 1.620485e-03	k: 412	n:280000
NLE1   280000 perm   90 sec   (3125 perm/sec)   p_kst 1.471429e-03   p_cons 2.100071e-01   p_joint 1.867857e-03

Joint ci ratio: 1.679106e-01	ci left: 1.718345e-03	ci right 2.036569e-03	k: 543	n:290000
Cons ci ratio: 1.413017e-02	ci left: 2.082436e-01	ci right 2.112105e-01	k: 60820	n:290000
KS ci ratio: 1.891190e-01	ci left: 1.339425e-03	ci right 1.622412e-03	k: 428	n:290000
NLE1   290000 perm   94 sec   (3084 perm/sec)   p_kst 1.475862e-03   p_cons 2.097241e-01   p_joint 1.872414e-03

Joint ci ratio: 1.659412e-01	ci left: 1.702589e-03	ci right 2.013827e-03	k: 556	n:300000
Cons ci ratio: 1.390040e-02	ci left: 2.080848e-01	ci right 2.110008e-01	k: 62862	n:300000
KS ci ratio: 1.856876e-01	ci left: 1.345609e-03	ci right 1.624164e-03	k: 444	n:300000
NLE1   300000 perm   98 sec   (3046 perm/sec)   p_kst 1.480000e-03   p_cons 2.095400e-01   p_joint 1.853333e-03

Joint ci ratio: 1.748162e-01	ci left: 1.477793e-03	ci right 1.763912e-03	k: 501	n:310000
Cons ci ratio: 1.367868e-02	ci left: 2.080042e-01	ci right 2.108722e-01	k: 64925	n:310000
KS ci ratio: 1.834355e-01	ci left: 1.336046e-03	ci right 1.608894e-03	k: 455	n:310000
NLE1   310000 perm   103 sec   (3007 perm/sec)   p_kst 1.467742e-03   p_cons 2.094355e-01   p_joint 1.616129e-03

Joint ci ratio: 1.776795e-01	ci left: 1.383811e-03	ci right 1.656594e-03	k: 485	n:320000
Cons ci ratio: 1.345594e-02	ci left: 2.082064e-01	ci right 2.110301e-01	k: 67077	n:320000
KS ci ratio: 1.795389e-01	ci left: 1.353956e-03	ci right 1.623951e-03	k: 475	n:320000
NLE1   320000 perm   108 sec   (2969 perm/sec)   p_kst 1.484375e-03   p_cons 2.096156e-01   p_joint 1.515625e-03

Joint ci ratio: 1.755265e-01	ci left: 1.376633e-03	ci right 1.644364e-03	k: 497	n:330000
Cons ci ratio: 1.325997e-02	ci left: 2.079917e-01	ci right 2.107710e-01	k: 69095	n:330000
KS ci ratio: 1.771369e-01	ci left: 1.350563e-03	ci right 1.615891e-03	k: 488	n:330000
NLE1   330000 perm   113 sec   (2932 perm/sec)   p_kst 1.478788e-03   p_cons 2.093788e-01   p_joint 1.506061e-03

Joint ci ratio: 1.760623e-01	ci left: 1.327706e-03	ci right 1.586793e-03	k: 494	n:340000
Cons ci ratio: 1.306454e-02	ci left: 2.079864e-01	ci right 2.107244e-01	k: 71180	n:340000
KS ci ratio: 1.750033e-01	ci left: 1.344579e-03	ci right 1.605213e-03	k: 500	n:340000
NLE1   340000 perm   117 sec   (2912 perm/sec)   p_kst 1.470588e-03   p_cons 2.093529e-01   p_joint 1.452941e-03

Joint ci ratio: 1.690304e-01	ci left: 1.404596e-03	ci right 1.666625e-03	k: 536	n:350000
Cons ci ratio: 1.287973e-02	ci left: 2.079247e-01	ci right 2.106229e-01	k: 73245	n:350000
KS ci ratio: 1.812747e-01	ci left: 1.213342e-03	ci right 1.457891e-03	k: 466	n:350000
NLE1   350000 perm   121 sec   (2893 perm/sec)   p_kst 1.331429e-03   p_cons 2.092714e-01   p_joint 1.531429e-03

Joint ci ratio: 1.667181e-01	ci left: 1.405495e-03	ci right 1.663746e-03	k: 551	n:360000
Cons ci ratio: 1.270308e-02	ci left: 2.078529e-01	ci right 2.105129e-01	k: 75305	n:360000
KS ci ratio: 1.791773e-01	ci left: 1.208815e-03	ci right 1.449327e-03	k: 477	n:360000
NLE1   360000 perm   125 sec   (2874 perm/sec)   p_kst 1.325000e-03   p_cons 2.091806e-01   p_joint 1.530556e-03

Joint ci ratio: 1.646436e-01	ci left: 1.403778e-03	ci right 1.658185e-03	k: 565	n:370000
Cons ci ratio: 1.252807e-02	ci left: 2.079281e-01	ci right 2.105521e-01	k: 77418	n:370000
KS ci ratio: 1.769700e-01	ci left: 1.207131e-03	ci right 1.444033e-03	k: 489	n:370000
NLE1   370000 perm   130 sec   (2855 perm/sec)   p_kst 1.321622e-03   p_cons 2.092378e-01   p_joint 1.527027e-03

Joint ci ratio: 1.550637e-01	ci left: 1.548746e-03	ci right 1.811578e-03	k: 637	n:380000
Cons ci ratio: 1.236335e-02	ci left: 2.079129e-01	ci right 2.105020e-01	k: 79498	n:380000
KS ci ratio: 1.753678e-01	ci left: 1.198004e-03	ci right 1.430760e-03	k: 498	n:380000
NLE1   380000 perm   134 sec   (2835 perm/sec)   p_kst 1.310526e-03   p_cons 2.092053e-01   p_joint 1.676316e-03

Joint ci ratio: 1.419610e-01	ci left: 1.812739e-03	ci right 2.092180e-03	k: 760	n:390000
Cons ci ratio: 1.220127e-02	ci left: 2.079985e-01	ci right 2.105545e-01	k: 81617	n:390000
KS ci ratio: 1.732967e-01	ci left: 1.196712e-03	ci right 1.426185e-03	k: 510	n:390000
NLE1   390000 perm   139 sec   (2815 perm/sec)   p_kst 1.307692e-03   p_cons 2.092744e-01   p_joint 1.948718e-03

Joint ci ratio: 1.482445e-01	ci left: 1.615623e-03	ci right 1.876679e-03	k: 697	n:400000
Cons ci ratio: 1.204868e-02	ci left: 2.079903e-01	ci right 2.105139e-01	k: 83700	n:400000
KS ci ratio: 1.717914e-01	ci left: 1.188322e-03	ci right 1.414001e-03	k: 519	n:400000
NLE1   400000 perm   143 sec   (2795 perm/sec)   p_kst 1.297500e-03   p_cons 2.092500e-01   p_joint 1.742500e-03

Joint ci ratio: 1.463691e-01	ci left: 1.618502e-03	ci right 1.876426e-03	k: 715	n:410000
Cons ci ratio: 1.190703e-02	ci left: 2.078342e-01	ci right 2.103261e-01	k: 85722	n:410000
KS ci ratio: 1.700031e-01	ci left: 1.185020e-03	ci right 1.407490e-03	k: 530	n:410000
NLE1   410000 perm   148 sec   (2775 perm/sec)   p_kst 1.292683e-03   p_cons 2.090780e-01   p_joint 1.743902e-03

Joint ci ratio: 1.442681e-01	ci left: 1.628149e-03	ci right 1.883565e-03	k: 736	n:420000
Cons ci ratio: 1.176390e-02	ci left: 2.078638e-01	ci right 2.103259e-01	k: 87819	n:420000
KS ci ratio: 1.678052e-01	ci left: 1.188730e-03	ci right 1.408719e-03	k: 544	n:420000
NLE1   420000 perm   152 sec   (2755 perm/sec)   p_kst 1.295238e-03   p_cons 2.090929e-01   p_joint 1.752381e-03

Joint ci ratio: 1.447638e-01	ci left: 1.579075e-03	ci right 1.827717e-03	k: 731	n:430000
Cons ci ratio: 1.163006e-02	ci left: 2.077716e-01	ci right 2.102044e-01	k: 89864	n:430000
KS ci ratio: 1.659879e-01	ci left: 1.187826e-03	ci right 1.405030e-03	k: 556	n:430000
NLE1   430000 perm   157 sec   (2735 perm/sec)   p_kst 1.293023e-03   p_cons 2.089860e-01   p_joint 1.700000e-03

Joint ci ratio: 1.425408e-01	ci left: 1.593582e-03	ci right 1.840327e-03	k: 754	n:440000
Cons ci ratio: 1.150132e-02	ci left: 2.076656e-01	ci right 2.100701e-01	k: 91901	n:440000
KS ci ratio: 1.635107e-01	ci left: 1.197874e-03	ci right 1.413324e-03	k: 573	n:440000
NLE1   440000 perm   162 sec   (2715 perm/sec)   p_kst 1.302273e-03   p_cons 2.088659e-01   p_joint 1.713636e-03

Joint ci ratio: 1.416072e-01	ci left: 1.579600e-03	ci right 1.822444e-03	k: 764	n:450000
Cons ci ratio: 1.137172e-02	ci left: 2.077108e-01	ci right 2.100885e-01	k: 94004	n:450000
KS ci ratio: 1.622444e-01	ci left: 1.190439e-03	ci right 1.402732e-03	k: 582	n:450000
NLE1   450000 perm   167 sec   (2695 perm/sec)   p_kst 1.293333e-03   p_cons 2.088978e-01   p_joint 1.697778e-03

Joint ci ratio: 1.402393e-01	ci left: 1.576720e-03	ci right 1.816583e-03	k: 779	n:460000
Cons ci ratio: 1.124839e-02	ci left: 2.076956e-01	ci right 2.100472e-01	k: 96080	n:460000
KS ci ratio: 1.593976e-01	ci left: 1.208376e-03	ci right 1.419725e-03	k: 603	n:460000
NLE1   460000 perm   172 sec   (2676 perm/sec)   p_kst 1.310870e-03   p_cons 2.088696e-01   p_joint 1.693478e-03

Joint ci ratio: 1.392617e-01	ci left: 1.565758e-03	ci right 1.802155e-03	k: 790	n:470000
Cons ci ratio: 1.112785e-02	ci left: 2.077152e-01	ci right 2.100416e-01	k: 98172	n:470000
KS ci ratio: 1.583532e-01	ci left: 1.199010e-03	ci right 1.407216e-03	k: 611	n:470000
NLE1   470000 perm   177 sec   (2657 perm/sec)   p_kst 1.300000e-03   p_cons 2.088766e-01   p_joint 1.680851e-03

Joint ci ratio: 1.377889e-01	ci left: 1.567327e-03	ci right 1.801254e-03	k: 807	n:480000
Cons ci ratio: 1.101895e-02	ci left: 2.074991e-01	ci right 2.098002e-01	k: 100151	n:480000
KS ci ratio: 1.569494e-01	ci left: 1.196043e-03	ci right 1.401719e-03	k: 622	n:480000
NLE1   480000 perm   182 sec   (2639 perm/sec)   p_kst 1.295833e-03   p_cons 2.086479e-01   p_joint 1.681250e-03

Joint ci ratio: 1.362791e-01	ci left: 1.570816e-03	ci right 1.802486e-03	k: 825	n:490000
Cons ci ratio: 1.090765e-02	ci left: 2.074590e-01	ci right 2.097363e-01	k: 102212	n:490000
KS ci ratio: 1.554595e-01	ci left: 1.195166e-03	ci right 1.398559e-03	k: 634	n:490000
NLE1   490000 perm   187 sec   (2618 perm/sec)   p_kst 1.293878e-03   p_cons 2.085959e-01   p_joint 1.683673e-03

Joint ci ratio: 1.382225e-01	ci left: 1.494976e-03	ci right 1.718863e-03	k: 802	n:500000
Cons ci ratio: 1.079482e-02	ci left: 2.075683e-01	ci right 2.098231e-01	k: 104347	n:500000
KS ci ratio: 1.540112e-01	ci left: 1.194334e-03	ci right 1.395516e-03	k: 646	n:500000
NLE1   500000 perm   192 sec   (2599 perm/sec)   p_kst 1.292000e-03   p_cons 2.086940e-01   p_joint 1.604000e-03

Joint ci ratio: 1.366986e-01	ci left: 1.499743e-03	ci right 1.721667e-03	k: 820	n:510000
Cons ci ratio: 1.068758e-02	ci left: 2.076069e-01	ci right 2.098396e-01	k: 106448	n:510000
KS ci ratio: 1.523713e-01	ci left: 1.197314e-03	ci right 1.396656e-03	k: 660	n:510000
NLE1   510000 perm   198 sec   (2580 perm/sec)   p_kst 1.294118e-03   p_cons 2.087216e-01   p_joint 1.607843e-03

Joint ci ratio: 1.357110e-01	ci left: 1.493192e-03	ci right 1.712421e-03	k: 832	n:520000
Cons ci ratio: 1.058143e-02	ci left: 2.077075e-01	ci right 2.099189e-01	k: 108582	n:520000
KS ci ratio: 1.505596e-01	ci left: 1.203893e-03	ci right 1.401731e-03	k: 676	n:520000
NLE1   520000 perm   203 sec   (2561 perm/sec)   p_kst 1.300000e-03   p_cons 2.088115e-01   p_joint 1.600000e-03

Joint ci ratio: 1.343469e-01	ci left: 1.496011e-03	ci right 1.713269e-03	k: 849	n:530000
Cons ci ratio: 1.047976e-02	ci left: 2.077610e-01	ci right 2.099516e-01	k: 110693	n:530000
KS ci ratio: 1.491345e-01	ci left: 1.204786e-03	ci right 1.400730e-03	k: 689	n:530000
NLE1   530000 perm   209 sec   (2541 perm/sec)   p_kst 1.300000e-03   p_cons 2.088547e-01   p_joint 1.601887e-03

Joint ci ratio: 1.331000e-01	ci left: 1.496945e-03	ci right 1.712163e-03	k: 865	n:540000
Cons ci ratio: 1.038085e-02	ci left: 2.078164e-01	ci right 2.099868e-01	k: 112806	n:540000
KS ci ratio: 1.479601e-01	ci left: 1.202088e-03	ci right 1.395918e-03	k: 700	n:540000
NLE1   540000 perm   214 sec   (2521 perm/sec)   p_kst 1.296296e-03   p_cons 2.089000e-01   p_joint 1.601852e-03

Joint ci ratio: 1.321125e-01	ci left: 1.492580e-03	ci right 1.705453e-03	k: 878	n:550000
Cons ci ratio: 1.028701e-02	ci left: 2.077954e-01	ci right 2.099458e-01	k: 114878	n:550000
KS ci ratio: 1.467098e-01	ci left: 1.201246e-03	ci right 1.393160e-03	k: 712	n:550000
NLE1   550000 perm   220 sec   (2502 perm/sec)   p_kst 1.294545e-03   p_cons 2.088691e-01   p_joint 1.596364e-03

Joint ci ratio: 1.357188e-01	ci left: 1.386530e-03	ci right 1.590112e-03	k: 832	n:560000
Cons ci ratio: 1.019385e-02	ci left: 2.078341e-01	ci right 2.099653e-01	k: 116983	n:560000
KS ci ratio: 1.446936e-01	ci left: 1.214208e-03	ci right 1.405297e-03	k: 732	n:560000
NLE1   560000 perm   226 sec   (2483 perm/sec)   p_kst 1.307143e-03   p_cons 2.088982e-01   p_joint 1.485714e-03

Joint ci ratio: 1.350725e-01	ci left: 1.375764e-03	ci right 1.576726e-03	k: 840	n:570000
Cons ci ratio: 1.010769e-02	ci left: 2.077244e-01	ci right 2.098364e-01	k: 119004	n:570000
KS ci ratio: 1.440084e-01	ci left: 1.204743e-03	ci right 1.393367e-03	k: 739	n:570000
NLE1   570000 perm   231 sec   (2465 perm/sec)   p_kst 1.296491e-03   p_cons 2.087789e-01   p_joint 1.473684e-03

Joint ci ratio: 1.458975e-01	ci left: 1.152399e-03	ci right 1.335400e-03	k: 720	n:580000
Cons ci ratio: 1.002032e-02	ci left: 2.077288e-01	ci right 2.098224e-01	k: 121089	n:580000
KS ci ratio: 1.427599e-01	ci left: 1.205581e-03	ci right 1.392560e-03	k: 752	n:580000
NLE1   580000 perm   237 sec   (2446 perm/sec)   p_kst 1.296552e-03   p_cons 2.087741e-01   p_joint 1.241379e-03

Joint ci ratio: 1.449958e-01	ci left: 1.147566e-03	ci right 1.328575e-03	k: 729	n:590000
Cons ci ratio: 9.930746e-03	ci left: 2.078802e-01	ci right 2.099566e-01	k: 123261	n:590000
KS ci ratio: 1.417287e-01	ci left: 1.203128e-03	ci right 1.388265e-03	k: 763	n:590000
NLE1   590000 perm   243 sec   (2428 perm/sec)   p_kst 1.293220e-03   p_cons 2.089169e-01   p_joint 1.235593e-03

Joint ci ratio: 1.439157e-01	ci left: 1.146110e-03	ci right 1.325428e-03	k: 740	n:600000
Cons ci ratio: 9.845169e-03	ci left: 2.079718e-01	ci right 2.100310e-01	k: 125400	n:600000
KS ci ratio: 1.404475e-01	ci left: 1.205586e-03	ci right 1.389284e-03	k: 777	n:600000
NLE1   600000 perm   249 sec   (2410 perm/sec)   p_kst 1.295000e-03   p_cons 2.090000e-01   p_joint 1.233333e-03

Joint ci ratio: 1.428594e-01	ci left: 1.144707e-03	ci right 1.322379e-03	k: 751	n:610000
Cons ci ratio: 9.763654e-03	ci left: 2.079966e-01	ci right 2.100390e-01	k: 127500	n:610000
KS ci ratio: 1.392886e-01	ci left: 1.206388e-03	ci right 1.388565e-03	k: 790	n:610000
NLE1   610000 perm   255 sec   (2391 perm/sec)   p_kst 1.295082e-03   p_cons 2.090164e-01   p_joint 1.231148e-03

Joint ci ratio: 1.421061e-01	ci left: 1.138687e-03	ci right 1.314414e-03	k: 759	n:620000
Cons ci ratio: 9.687203e-03	ci left: 2.079160e-01	ci right 2.099415e-01	k: 129535	n:620000
KS ci ratio: 1.383303e-01	ci left: 1.204056e-03	ci right 1.384527e-03	k: 801	n:620000
NLE1   620000 perm   262 sec   (2369 perm/sec)   p_kst 1.291935e-03   p_cons 2.089274e-01   p_joint 1.224194e-03

Joint ci ratio: 1.409973e-01	ci left: 1.138986e-03	ci right 1.313272e-03	k: 771	n:630000
Cons ci ratio: 9.612842e-03	ci left: 2.078270e-01	ci right 2.098360e-01	k: 131563	n:630000
KS ci ratio: 1.372227e-01	ci left: 1.204867e-03	ci right 1.383896e-03	k: 814	n:630000
NLE1   630000 perm   269 sec   (2344 perm/sec)   p_kst 1.292063e-03   p_cons 2.088302e-01   p_joint 1.223810e-03

Joint ci ratio: 1.399141e-01	ci left: 1.139280e-03	ci right 1.312160e-03	k: 783	n:640000
Cons ci ratio: 9.534440e-03	ci left: 2.079389e-01	ci right 2.099325e-01	k: 133718	n:640000
KS ci ratio: 1.362236e-01	ci left: 1.204150e-03	ci right 1.381664e-03	k: 826	n:640000
NLE1   640000 perm   276 sec   (2319 perm/sec)   p_kst 1.290625e-03   p_cons 2.089344e-01   p_joint 1.223437e-03

Joint ci ratio: 1.455038e-01	ci left: 1.034219e-03	ci right 1.197972e-03	k: 724	n:650000
Cons ci ratio: 9.462239e-03	ci left: 2.078969e-01	ci right 2.098749e-01	k: 135775	n:650000
KS ci ratio: 1.353267e-01	ci left: 1.201973e-03	ci right 1.377905e-03	k: 837	n:650000
NLE1   650000 perm   283 sec   (2296 perm/sec)   p_kst 1.287692e-03   p_cons 2.088846e-01   p_joint 1.113846e-03

Joint ci ratio: 1.449060e-01	ci left: 1.027310e-03	ci right 1.189242e-03	k: 730	n:660000
Cons ci ratio: 9.386403e-03	ci left: 2.080408e-01	ci right 2.100042e-01	k: 137954	n:660000
KS ci ratio: 1.338958e-01	ci left: 1.210116e-03	ci right 1.385218e-03	k: 855	n:660000
NLE1   660000 perm   290 sec   (2275 perm/sec)   p_kst 1.295455e-03   p_cons 2.090212e-01   p_joint 1.106061e-03

Joint ci ratio: 1.438279e-01	ci left: 1.027801e-03	ci right 1.188502e-03	k: 741	n:670000
Cons ci ratio: 9.316858e-03	ci left: 2.080210e-01	ci right 2.099696e-01	k: 140026	n:670000
KS ci ratio: 1.324335e-01	ci left: 1.219468e-03	ci right 1.393845e-03	k: 874	n:670000
NLE1   670000 perm   297 sec   (2259 perm/sec)   p_kst 1.304478e-03   p_cons 2.089940e-01   p_joint 1.105970e-03

Joint ci ratio: 1.426787e-01	ci left: 1.029701e-03	ci right 1.189304e-03	k: 753	n:680000
Cons ci ratio: 9.249536e-03	ci left: 2.079769e-01	ci right 2.099109e-01	k: 142081	n:680000
KS ci ratio: 1.311651e-01	ci left: 1.225711e-03	ci right 1.399171e-03	k: 891	n:680000
NLE1   680000 perm   303 sec   (2243 perm/sec)   p_kst 1.310294e-03   p_cons 2.089426e-01   p_joint 1.107353e-03

Joint ci ratio: 1.419281e-01	ci left: 1.025959e-03	ci right 1.184074e-03	k: 761	n:690000
Cons ci ratio: 9.181680e-03	ci left: 2.080050e-01	ci right 2.099250e-01	k: 144185	n:690000
KS ci ratio: 1.300041e-01	ci left: 1.230378e-03	ci right 1.402838e-03	k: 907	n:690000
NLE1   690000 perm   310 sec   (2228 perm/sec)   p_kst 1.314493e-03   p_cons 2.089638e-01   p_joint 1.102899e-03

Joint ci ratio: 1.409146e-01	ci left: 1.026461e-03	ci right 1.183429e-03	k: 772	n:700000
Cons ci ratio: 9.113681e-03	ci left: 2.080908e-01	ci right 2.099973e-01	k: 146330	n:700000
KS ci ratio: 1.286643e-01	ci left: 1.239066e-03	ci right 1.410818e-03	k: 926	n:700000
NLE1   700000 perm   316 sec   (2212 perm/sec)   p_kst 1.322857e-03   p_cons 2.090429e-01   p_joint 1.102857e-03

Joint ci ratio: 1.399226e-01	ci left: 1.026953e-03	ci right 1.182798e-03	k: 783	n:710000
Cons ci ratio: 9.047864e-03	ci left: 2.081489e-01	ci right 2.100422e-01	k: 148457	n:710000
KS ci ratio: 1.279762e-01	ci left: 1.235247e-03	ci right 1.405484e-03	k: 936	n:710000
NLE1   710000 perm   323 sec   (2197 perm/sec)   p_kst 1.318310e-03   p_cons 2.090944e-01   p_joint 1.102817e-03

Joint ci ratio: 1.393025e-01	ci left: 1.022072e-03	ci right 1.176432e-03	k: 790	n:720000
Cons ci ratio: 8.982924e-03	ci left: 2.082249e-01	ci right 2.101052e-01	k: 150598	n:720000
KS ci ratio: 1.273663e-01	ci left: 1.230191e-03	ci right 1.398862e-03	k: 945	n:720000
NLE1   720000 perm   330 sec   (2182 perm/sec)   p_kst 1.312500e-03   p_cons 2.091639e-01   p_joint 1.097222e-03

Joint ci ratio: 1.410092e-01	ci left: 9.829547e-04	ci right 1.133378e-03	k: 771	n:730000
Cons ci ratio: 8.922761e-03	ci left: 2.081731e-01	ci right 2.100402e-01	k: 152647	n:730000
KS ci ratio: 1.264342e-01	ci left: 1.231908e-03	ci right 1.399486e-03	k: 959	n:730000
NLE1   730000 perm   337 sec   (2168 perm/sec)   p_kst 1.313699e-03   p_cons 2.091055e-01   p_joint 1.056164e-03

Joint ci ratio: 1.448156e-01	ci left: 9.175477e-04	ci right 1.062080e-03	k: 731	n:740000
Cons ci ratio: 8.863248e-03	ci left: 2.081429e-01	ci right 2.099972e-01	k: 154711	n:740000
KS ci ratio: 1.257810e-01	ci left: 1.228348e-03	ci right 1.394514e-03	k: 969	n:740000
NLE1   740000 perm   344 sec   (2153 perm/sec)   p_kst 1.309459e-03   p_cons 2.090689e-01   p_joint 9.878378e-04

Joint ci ratio: 1.458170e-01	ci left: 8.924643e-04	ci right 1.034102e-03	k: 721	n:750000
Cons ci ratio: 8.805299e-03	ci left: 2.080989e-01	ci right 2.099407e-01	k: 156764	n:750000
KS ci ratio: 1.246296e-01	ci left: 1.235219e-03	ci right 1.400671e-03	k: 987	n:750000
NLE1   750000 perm   351 sec   (2138 perm/sec)   p_kst 1.316000e-03   p_cons 2.090187e-01   p_joint 9.613333e-04

Joint ci ratio: 1.452152e-01	ci left: 8.883285e-04	ci right 1.028678e-03	k: 727	n:760000
Cons ci ratio: 8.748264e-03	ci left: 2.080640e-01	ci right 2.098935e-01	k: 158823	n:760000
KS ci ratio: 1.240661e-01	ci left: 1.230439e-03	ci right 1.394452e-03	k: 996	n:760000
NLE1   760000 perm   358 sec   (2123 perm/sec)   p_kst 1.310526e-03   p_cons 2.089776e-01   p_joint 9.565789e-04

Joint ci ratio: 1.437414e-01	ci left: 8.955683e-04	ci right 1.035502e-03	k: 742	n:770000
Cons ci ratio: 8.691025e-03	ci left: 2.080793e-01	ci right 2.098969e-01	k: 160920	n:770000
KS ci ratio: 1.232040e-01	ci left: 1.232079e-03	ci right 1.395086e-03	k: 1010	n:770000
NLE1   770000 perm   365 sec   (2109 perm/sec)   p_kst 1.311688e-03   p_cons 2.089870e-01   p_joint 9.636364e-04

Joint ci ratio: 1.386954e-01	ci left: 9.521108e-04	ci right 1.095226e-03	k: 797	n:780000
Cons ci ratio: 8.633925e-03	ci left: 2.081314e-01	ci right 2.099374e-01	k: 163046	n:780000
KS ci ratio: 1.221808e-01	ci left: 1.237410e-03	ci right 1.399664e-03	k: 1027	n:780000
NLE1   780000 perm   372 sec   (2094 perm/sec)   p_kst 1.316667e-03   p_cons 2.090333e-01   p_joint 1.021795e-03

Joint ci ratio: 1.393975e-01	ci left: 9.302838e-04	ci right 1.070885e-03	k: 789	n:790000
Cons ci ratio: 8.581943e-03	ci left: 2.080280e-01	ci right 2.098222e-01	k: 165050	n:790000
KS ci ratio: 1.216497e-01	ci left: 1.232791e-03	ci right 1.393686e-03	k: 1036	n:790000
NLE1   790000 perm   380 sec   (2080 perm/sec)   p_kst 1.311392e-03   p_cons 2.089241e-01   p_joint 9.987342e-04

Joint ci ratio: 1.385235e-01	ci left: 9.307207e-04	ci right 1.070433e-03	k: 799	n:800000
Cons ci ratio: 8.528854e-03	ci left: 2.080059e-01	ci right 2.097887e-01	k: 167117	n:800000
KS ci ratio: 1.209520e-01	ci left: 1.231926e-03	ci right 1.391720e-03	k: 1048	n:800000
NLE1   800000 perm   387 sec   (2066 perm/sec)   p_kst 1.310000e-03   p_cons 2.088963e-01   p_joint 9.987500e-04

Joint ci ratio: 1.382651e-01	ci left: 9.228055e-04	ci right 1.061050e-03	k: 802	n:810000
Cons ci ratio: 8.474524e-03	ci left: 2.080706e-01	ci right 2.098426e-01	k: 169254	n:810000
KS ci ratio: 1.207802e-01	ci left: 1.220308e-03	ci right 1.378355e-03	k: 1051	n:810000
NLE1   810000 perm   395 sec   (2052 perm/sec)   p_kst 1.297531e-03   p_cons 2.089556e-01   p_joint 9.901235e-04

Joint ci ratio: 1.323737e-01	ci left: 9.975662e-04	ci right 1.140142e-03	k: 875	n:820000
Cons ci ratio: 8.423827e-03	ci left: 2.080315e-01	ci right 2.097925e-01	k: 171307	n:820000
KS ci ratio: 1.199844e-01	ci left: 1.221986e-03	ci right 1.379132e-03	k: 1065	n:820000
NLE1   820000 perm   402 sec   (2039 perm/sec)   p_kst 1.298780e-03   p_cons 2.089110e-01   p_joint 1.067073e-03

Joint ci ratio: 1.316246e-01	ci left: 9.971977e-04	ci right 1.138852e-03	k: 885	n:830000
Cons ci ratio: 8.370979e-03	ci left: 2.081137e-01	ci right 2.098643e-01	k: 173460	n:830000
KS ci ratio: 1.192041e-01	ci left: 1.223626e-03	ci right 1.379888e-03	k: 1079	n:830000
NLE1   830000 perm   410 sec   (2025 perm/sec)   p_kst 1.300000e-03   p_cons 2.089880e-01   p_joint 1.066265e-03

Joint ci ratio: 1.314029e-01	ci left: 9.887799e-04	ci right 1.128983e-03	k: 888	n:840000
Cons ci ratio: 8.320340e-03	ci left: 2.081452e-01	ci right 2.098854e-01	k: 175572	n:840000
KS ci ratio: 1.187654e-01	ci left: 1.218299e-03	ci right 1.373268e-03	k: 1087	n:840000
NLE1   840000 perm   417 sec   (2012 perm/sec)   p_kst 1.294048e-03   p_cons 2.090143e-01   p_joint 1.057143e-03

Joint ci ratio: 1.314037e-01	ci left: 9.771469e-04	ci right 1.115701e-03	k: 888	n:850000
Cons ci ratio: 8.270786e-03	ci left: 2.081689e-01	ci right 2.098989e-01	k: 177678	n:850000
KS ci ratio: 1.178480e-01	ci left: 1.223374e-03	ci right 1.377703e-03	k: 1104	n:850000
NLE1   850000 perm   425 sec   (1999 perm/sec)   p_kst 1.298824e-03   p_cons 2.090329e-01   p_joint 1.044706e-03

Joint ci ratio: 1.303086e-01	ci left: 9.826558e-04	ci right 1.120740e-03	k: 903	n:860000
Cons ci ratio: 8.223842e-03	ci left: 2.081225e-01	ci right 2.098423e-01	k: 179724	n:860000
KS ci ratio: 1.170037e-01	ci left: 1.227207e-03	ci right 1.380834e-03	k: 1120	n:860000
NLE1   860000 perm   433 sec   (1986 perm/sec)   p_kst 1.302326e-03   p_cons 2.089814e-01   p_joint 1.050000e-03

Joint ci ratio: 1.298787e-01	ci left: 9.780328e-04	ci right 1.114979e-03	k: 909	n:870000
Cons ci ratio: 8.176977e-03	ci left: 2.081058e-01	ci right 2.098156e-01	k: 181795	n:870000
KS ci ratio: 1.165371e-01	ci left: 1.223144e-03	ci right 1.375610e-03	k: 1129	n:870000
NLE1   870000 perm   441 sec   (1973 perm/sec)   p_kst 1.297701e-03   p_cons 2.089598e-01   p_joint 1.044828e-03

Joint ci ratio: 1.271129e-01	ci left: 1.010913e-03	ci right 1.149223e-03	k: 949	n:880000
Cons ci ratio: 8.131016e-03	ci left: 2.080851e-01	ci right 2.097850e-01	k: 183862	n:880000
KS ci ratio: 1.156700e-01	ci left: 1.228002e-03	ci right 1.379857e-03	k: 1146	n:880000
NLE1   880000 perm   449 sec   (1961 perm/sec)   p_kst 1.302273e-03   p_cons 2.089341e-01   p_joint 1.078409e-03

Joint ci ratio: 1.261862e-01	ci left: 1.014787e-03	ci right 1.152538e-03	k: 963	n:890000
Cons ci ratio: 8.085656e-03	ci left: 2.080715e-01	ci right 2.097618e-01	k: 185935	n:890000
KS ci ratio: 1.149209e-01	ci left: 1.230572e-03	ci right 1.381692e-03	k: 1161	n:890000
NLE1   890000 perm   457 sec   (1948 perm/sec)   p_kst 1.304494e-03   p_cons 2.089157e-01   p_joint 1.082022e-03

Joint ci ratio: 1.257308e-01	ci left: 1.011044e-03	ci right 1.147755e-03	k: 970	n:900000
Cons ci ratio: 8.039399e-03	ci left: 2.081260e-01	ci right 2.098070e-01	k: 188069	n:900000
KS ci ratio: 1.144787e-01	ci left: 1.226612e-03	ci right 1.376627e-03	k: 1170	n:900000
NLE1   900000 perm   465 sec   (1936 perm/sec)   p_kst 1.300000e-03   p_cons 2.089656e-01   p_joint 1.077778e-03

Joint ci ratio: 1.260569e-01	ci left: 9.946118e-04	ci right 1.129476e-03	k: 965	n:910000
Cons ci ratio: 7.994033e-03	ci left: 2.081749e-01	ci right 2.098468e-01	k: 190199	n:910000
KS ci ratio: 1.138485e-01	ci left: 1.227011e-03	ci right 1.376193e-03	k: 1183	n:910000
NLE1   910000 perm   473 sec   (1925 perm/sec)   p_kst 1.300000e-03   p_cons 2.090099e-01   p_joint 1.060440e-03

Joint ci ratio: 1.244558e-01	ci left: 1.010124e-03	ci right 1.145223e-03	k: 990	n:920000
Cons ci ratio: 7.949896e-03	ci left: 2.082032e-01	ci right 2.098660e-01	k: 192311	n:920000
KS ci ratio: 1.136094e-01	ci left: 1.218954e-03	ci right 1.366824e-03	k: 1188	n:920000
NLE1   920000 perm   481 sec   (1913 perm/sec)   p_kst 1.291304e-03   p_cons 2.090337e-01   p_joint 1.076087e-03

Joint ci ratio: 1.238946e-01	ci left: 1.008639e-03	ci right 1.142887e-03	k: 999	n:930000
Cons ci ratio: 7.907357e-03	ci left: 2.081944e-01	ci right 2.098483e-01	k: 194389	n:930000
KS ci ratio: 1.129933e-01	ci left: 1.219429e-03	ci right 1.366501e-03	k: 1201	n:930000
NLE1   930000 perm   489 sec   (1901 perm/sec)   p_kst 1.291398e-03   p_cons 2.090204e-01   p_joint 1.074194e-03

Joint ci ratio: 1.237096e-01	ci left: 1.001001e-03	ci right 1.134019e-03	k: 1002	n:940000
Cons ci ratio: 7.865493e-03	ci left: 2.081859e-01	ci right 2.098308e-01	k: 196467	n:940000
KS ci ratio: 1.121104e-01	ci left: 1.226100e-03	ci right 1.372745e-03	k: 1220	n:940000
NLE1   940000 perm   498 sec   (1889 perm/sec)   p_kst 1.297872e-03   p_cons 2.090074e-01   p_joint 1.065957e-03

Joint ci ratio: 1.230976e-01	ci left: 1.000666e-03	ci right 1.132933e-03	k: 1012	n:950000
Cons ci ratio: 7.823789e-03	ci left: 2.081985e-01	ci right 2.098348e-01	k: 198565	n:950000
KS ci ratio: 1.114731e-01	ci left: 1.227519e-03	ci right 1.373444e-03	k: 1234	n:950000
NLE1   950000 perm   506 sec   (1877 perm/sec)   p_kst 1.298947e-03   p_cons 2.090158e-01   p_joint 1.065263e-03

Joint ci ratio: 1.218995e-01	ci left: 1.010437e-03	ci right 1.142603e-03	k: 1032	n:960000
Cons ci ratio: 7.783281e-03	ci left: 2.081881e-01	ci right 2.098158e-01	k: 200641	n:960000
KS ci ratio: 1.105368e-01	ci left: 1.236000e-03	ci right 1.381619e-03	k: 1255	n:960000
NLE1   960000 perm   514 sec   (1866 perm/sec)   p_kst 1.307292e-03   p_cons 2.090010e-01   p_joint 1.075000e-03

Joint ci ratio: 1.214304e-01	ci left: 1.008017e-03	ci right 1.139322e-03	k: 1040	n:970000
Cons ci ratio: 7.744192e-03	ci left: 2.081439e-01	ci right 2.097630e-01	k: 202684	n:970000
KS ci ratio: 1.100560e-01	ci left: 1.234285e-03	ci right 1.379028e-03	k: 1266	n:970000
NLE1   970000 perm   523 sec   (1854 perm/sec)   p_kst 1.305155e-03   p_cons 2.089526e-01   p_joint 1.072165e-03

Joint ci ratio: 1.211402e-01	ci left: 1.002678e-03	ci right 1.132953e-03	k: 1045	n:980000
Cons ci ratio: 7.703642e-03	ci left: 2.081882e-01	ci right 2.097992e-01	k: 204813	n:980000
KS ci ratio: 1.093248e-01	ci left: 1.238561e-03	ci right 1.382779e-03	k: 1283	n:980000
NLE1   980000 perm   532 sec   (1843 perm/sec)   p_kst 1.309184e-03   p_cons 2.089929e-01   p_joint 1.066327e-03

Joint ci ratio: 1.205652e-01	ci left: 1.002346e-03	ci right 1.131915e-03	k: 1055	n:990000
Cons ci ratio: 7.665571e-03	ci left: 2.081520e-01	ci right 2.097547e-01	k: 206863	n:990000
KS ci ratio: 1.088175e-01	ci left: 1.237841e-03	ci right 1.381264e-03	k: 1295	n:990000
NLE1   990000 perm   541 sec   (1831 perm/sec)   p_kst 1.308081e-03   p_cons 2.089525e-01   p_joint 1.065657e-03

Joint ci ratio: 1.124843e-01	ci left: 1.144756e-03	ci right 1.282159e-03	k: 1212	n:1000000
Cons ci ratio: 7.628197e-03	ci left: 2.081106e-01	ci right 2.097051e-01	k: 208907	n:1000000
KS ci ratio: 1.081106e-01	ci left: 1.242002e-03	ci right 1.384912e-03	k: 1312	n:1000000
NLE1   1000000 perm   549 sec   (1820 perm/sec)   p_kst 1.312000e-03   p_cons 2.089070e-01   p_joint 1.212000e-03

Joint ci ratio: 1.151284e-01	ci left: 1.080514e-03	ci right 1.213462e-03	k: 1157	n:1010000
Cons ci ratio: 7.591684e-03	ci left: 2.080561e-01	ci right 2.096426e-01	k: 210937	n:1010000
KS ci ratio: 1.076607e-01	ci left: 1.240302e-03	ci right 1.382385e-03	k: 1323	n:1010000
NLE1   1010000 perm   558 sec   (1809 perm/sec)   p_kst 1.309901e-03   p_cons 2.088485e-01   p_joint 1.145545e-03

Joint ci ratio: 1.181824e-01	ci left: 1.013763e-03	ci right 1.142038e-03	k: 1098	n:1020000
Cons ci ratio: 7.554098e-03	ci left: 2.080723e-01	ci right 2.096510e-01	k: 213038	n:1020000
KS ci ratio: 1.072968e-01	ci left: 1.236728e-03	ci right 1.377893e-03	k: 1332	n:1020000
NLE1   1020000 perm   567 sec   (1798 perm/sec)   p_kst 1.305882e-03   p_cons 2.088608e-01   p_joint 1.076471e-03

Joint ci ratio: 1.174366e-01	ci left: 1.017113e-03	ci right 1.144943e-03	k: 1112	n:1030000
Cons ci ratio: 7.516446e-03	ci left: 2.081153e-01	ci right 2.096864e-01	k: 215167	n:1030000
KS ci ratio: 1.065794e-01	ci left: 1.241730e-03	ci right 1.382458e-03	k: 1350	n:1030000
NLE1   1030000 perm   577 sec   (1786 perm/sec)   p_kst 1.310680e-03   p_cons 2.089000e-01   p_joint 1.079612e-03

Joint ci ratio: 1.169126e-01	ci left: 1.016666e-03	ci right 1.143831e-03	k: 1122	n:1040000
Cons ci ratio: 7.479483e-03	ci left: 2.081517e-01	ci right 2.097153e-01	k: 217290	n:1040000
KS ci ratio: 1.062655e-01	ci left: 1.237277e-03	ci right 1.377062e-03	k: 1358	n:1040000
NLE1   1040000 perm   586 sec   (1776 perm/sec)   p_kst 1.305769e-03   p_cons 2.089327e-01   p_joint 1.078846e-03

Joint ci ratio: 1.164986e-01	ci left: 1.014381e-03	ci right 1.140779e-03	k: 1130	n:1050000
Cons ci ratio: 7.443188e-03	ci left: 2.081817e-01	ci right 2.097380e-01	k: 219407	n:1050000
KS ci ratio: 1.057995e-01	ci left: 1.236619e-03	ci right 1.375679e-03	k: 1370	n:1050000
NLE1   1050000 perm   595 sec   (1765 perm/sec)   p_kst 1.304762e-03   p_cons 2.089590e-01   p_joint 1.076190e-03

Joint ci ratio: 1.159870e-01	ci left: 1.013971e-03	ci right 1.139725e-03	k: 1140	n:1060000
Cons ci ratio: 7.408663e-03	ci left: 2.081556e-01	ci right 2.097044e-01	k: 221465	n:1060000
KS ci ratio: 1.052253e-01	ci left: 1.238731e-03	ci right 1.377225e-03	k: 1385	n:1060000
NLE1   1060000 perm   604 sec   (1754 perm/sec)   p_kst 1.306604e-03   p_cons 2.089292e-01   p_joint 1.075472e-03

Joint ci ratio: 1.162428e-01	ci left: 9.999566e-04	ci right 1.124265e-03	k: 1135	n:1070000
Cons ci ratio: 7.372572e-03	ci left: 2.082215e-01	ci right 2.097632e-01	k: 223621	n:1070000
KS ci ratio: 1.045857e-01	ci left: 1.242625e-03	ci right 1.380658e-03	k: 1402	n:1070000
NLE1   1070000 perm   614 sec   (1744 perm/sec)   p_kst 1.310280e-03   p_cons 2.089916e-01   p_joint 1.060748e-03

Joint ci ratio: 1.158865e-01	ci left: 9.969909e-04	ci right 1.120525e-03	k: 1142	n:1080000
Cons ci ratio: 7.337228e-03	ci left: 2.082760e-01	ci right 2.098107e-01	k: 225766	n:1080000
KS ci ratio: 1.041045e-01	ci left: 1.242842e-03	ci right 1.380225e-03	k: 1415	n:1080000
NLE1   1080000 perm   623 sec   (1734 perm/sec)   p_kst 1.310185e-03   p_cons 2.090426e-01   p_joint 1.057407e-03

Joint ci ratio: 1.080753e-01	ci left: 1.140341e-03	ci right 1.271507e-03	k: 1313	n:1090000
Cons ci ratio: 7.302672e-03	ci left: 2.083167e-01	ci right 2.098445e-01	k: 227897	n:1090000
KS ci ratio: 1.036299e-01	ci left: 1.243057e-03	ci right 1.379799e-03	k: 1428	n:1090000
NLE1   1090000 perm   632 sec   (1724 perm/sec)   p_kst 1.310092e-03   p_cons 2.090798e-01   p_joint 1.204587e-03

Joint ci ratio: 1.077888e-01	ci left: 1.136166e-03	ci right 1.266484e-03	k: 1320	n:1100000
Cons ci ratio: 7.269119e-03	ci left: 2.083331e-01	ci right 2.098539e-01	k: 230002	n:1100000
KS ci ratio: 1.031975e-01	ci left: 1.242383e-03	ci right 1.378447e-03	k: 1440	n:1100000
NLE1   1100000 perm   642 sec   (1714 perm/sec)   p_kst 1.309091e-03   p_cons 2.090927e-01   p_joint 1.200000e-03

Joint ci ratio: 1.075046e-01	ci left: 1.132066e-03	ci right 1.261550e-03	k: 1327	n:1110000
Cons ci ratio: 7.236674e-03	ci left: 2.083195e-01	ci right 2.098334e-01	k: 232074	n:1110000
KS ci ratio: 1.027705e-01	ci left: 1.241723e-03	ci right 1.377117e-03	k: 1452	n:1110000
NLE1   1110000 perm   651 sec   (1704 perm/sec)   p_kst 1.308108e-03   p_cons 2.090757e-01   p_joint 1.195495e-03

Joint ci ratio: 1.107681e-01	ci left: 1.055082e-03	ci right 1.179663e-03	k: 1250	n:1120000
Cons ci ratio: 7.204777e-03	ci left: 2.083008e-01	ci right 2.098079e-01	k: 234140	n:1120000
KS ci ratio: 1.022092e-01	ci left: 1.244555e-03	ci right 1.379473e-03	k: 1468	n:1120000
NLE1   1120000 perm   661 sec   (1695 perm/sec)   p_kst 1.310714e-03   p_cons 2.090536e-01   p_joint 1.116071e-03

Joint ci ratio: 1.103280e-01	ci left: 1.054350e-03	ci right 1.178318e-03	k: 1260	n:1130000
Cons ci ratio: 7.172741e-03	ci left: 2.083081e-01	ci right 2.098085e-01	k: 236235	n:1130000
KS ci ratio: 1.018632e-01	ci left: 1.242165e-03	ci right 1.376341e-03	k: 1478	n:1130000
NLE1   1130000 perm   670 sec   (1686 perm/sec)   p_kst 1.307965e-03   p_cons 2.090575e-01   p_joint 1.115044e-03

Joint ci ratio: 1.099799e-01	ci left: 1.051926e-03	ci right 1.175193e-03	k: 1268	n:1140000
Cons ci ratio: 7.141091e-03	ci left: 2.083170e-01	ci right 2.098108e-01	k: 238332	n:1140000
KS ci ratio: 1.015549e-01	ci left: 1.238963e-03	ci right 1.372363e-03	k: 1487	n:1140000
NLE1   1140000 perm   680 sec   (1677 perm/sec)   p_kst 1.304386e-03   p_cons 2.090632e-01   p_joint 1.112281e-03

Joint ci ratio: 1.102416e-01	ci left: 1.037704e-03	ci right 1.159613e-03	k: 1262	n:1150000
Cons ci ratio: 7.107725e-03	ci left: 2.084248e-01	ci right 2.099123e-01	k: 240543	n:1150000
KS ci ratio: 1.011479e-01	ci left: 1.238360e-03	ci right 1.371129e-03	k: 1499	n:1150000
NLE1   1150000 perm   689 sec   (1668 perm/sec)   p_kst 1.303478e-03   p_cons 2.091678e-01   p_joint 1.097391e-03

Joint ci ratio: 1.098078e-01	ci left: 1.037142e-03	ci right 1.158475e-03	k: 1272	n:1160000
Cons ci ratio: 7.077957e-03	ci left: 2.083844e-01	ci right 2.098654e-01	k: 242584	n:1160000
KS ci ratio: 1.008460e-01	ci left: 1.235247e-03	ci right 1.367264e-03	k: 1508	n:1160000
NLE1   1160000 perm   699 sec   (1659 perm/sec)   p_kst 1.300000e-03   p_cons 2.091241e-01   p_joint 1.096552e-03

Joint ci ratio: 1.093364e-01	ci left: 1.037422e-03	ci right 1.158232e-03	k: 1283	n:1170000
Cons ci ratio: 7.048341e-03	ci left: 2.083549e-01	ci right 2.098295e-01	k: 244637	n:1170000
KS ci ratio: 1.003484e-01	ci left: 1.237187e-03	ci right 1.368720e-03	k: 1523	n:1170000
NLE1   1170000 perm   709 sec   (1649 perm/sec)   p_kst 1.301709e-03   p_cons 2.090915e-01   p_joint 1.096581e-03

Joint ci ratio: 1.087870e-01	ci left: 1.039346e-03	ci right 1.159734e-03	k: 1296	n:1180000
Cons ci ratio: 7.018392e-03	ci left: 2.083589e-01	ci right 2.098272e-01	k: 246729	n:1180000
KS ci ratio: 9.985807e-02	ci left: 1.239096e-03	ci right 1.370151e-03	k: 1538	n:1180000
NLE1   1180000 perm   719 sec   (1641 perm/sec)   p_kst 1.303390e-03   p_cons 2.090924e-01   p_joint 1.098305e-03

Joint ci ratio: 1.081632e-01	ci left: 1.042876e-03	ci right 1.162935e-03	k: 1311	n:1190000
Cons ci ratio: 6.989160e-03	ci left: 2.083470e-01	ci right 2.098091e-01	k: 248802	n:1190000
KS ci ratio: 9.937488e-02	ci left: 1.240975e-03	ci right 1.371556e-03	k: 1553	n:1190000
NLE1   1190000 perm   729 sec   (1631 perm/sec)   p_kst 1.305042e-03   p_cons 2.090773e-01   p_joint 1.101681e-03

Joint ci ratio: 1.075094e-01	ci left: 1.047159e-03	ci right 1.166937e-03	k: 1327	n:1200000
Cons ci ratio: 6.959903e-03	ci left: 2.083535e-01	ci right 2.098095e-01	k: 250897	n:1200000
KS ci ratio: 9.870983e-02	ci left: 1.247700e-03	ci right 1.378060e-03	k: 1574	n:1200000
NLE1   1200000 perm   740 sec   (1622 perm/sec)   p_kst 1.311667e-03   p_cons 2.090808e-01   p_joint 1.105833e-03

Joint ci ratio: 1.070269e-01	ci left: 1.048156e-03	ci right 1.167476e-03	k: 1339	n:1210000
Cons ci ratio: 6.931791e-03	ci left: 2.083229e-01	ci right 2.097727e-01	k: 252947	n:1210000
KS ci ratio: 9.824304e-02	ci left: 1.249480e-03	ci right 1.379372e-03	k: 1589	n:1210000
NLE1   1210000 perm   750 sec   (1614 perm/sec)   p_kst 1.313223e-03   p_cons 2.090471e-01   p_joint 1.106612e-03

Joint ci ratio: 1.067090e-01	ci left: 1.045947e-03	ci right 1.164639e-03	k: 1347	n:1220000
Cons ci ratio: 6.901689e-03	ci left: 2.084040e-01	ci right 2.098482e-01	k: 255133	n:1220000
KS ci ratio: 9.799702e-02	ci left: 1.245634e-03	ci right 1.374785e-03	k: 1597	n:1220000
NLE1   1220000 perm   760 sec   (1605 perm/sec)   p_kst 1.309016e-03   p_cons 2.091254e-01   p_joint 1.104098e-03

Joint ci ratio: 1.063546e-01	ci left: 1.044565e-03	ci right 1.162682e-03	k: 1356	n:1230000
Cons ci ratio: 6.875372e-03	ci left: 2.083207e-01	ci right 2.097587e-01	k: 257118	n:1230000
KS ci ratio: 9.757052e-02	ci left: 1.246611e-03	ci right 1.375268e-03	k: 1611	n:1230000
NLE1   1230000 perm   770 sec   (1597 perm/sec)   p_kst 1.309756e-03   p_cons 2.090390e-01   p_joint 1.102439e-03

Joint ci ratio: 1.060037e-01	ci left: 1.043206e-03	ci right 1.160757e-03	k: 1365	n:1240000
Cons ci ratio: 6.846764e-03	ci left: 2.083636e-01	ci right 2.097959e-01	k: 259258	n:1240000
KS ci ratio: 9.717945e-02	ci left: 1.246786e-03	ci right 1.374916e-03	k: 1624	n:1240000
NLE1   1240000 perm   781 sec   (1589 perm/sec)   p_kst 1.309677e-03   p_cons 2.090790e-01   p_joint 1.100806e-03

Joint ci ratio: 1.087484e-01	ci left: 9.819197e-04	ci right 1.095613e-03	k: 1297	n:1250000
Cons ci ratio: 6.818841e-03	ci left: 2.083898e-01	ci right 2.098164e-01	k: 261378	n:1250000
KS ci ratio: 9.685228e-02	ci left: 1.245398e-03	ci right 1.372930e-03	k: 1635	n:1250000
NLE1   1250000 perm   791 sec   (1580 perm/sec)   p_kst 1.308000e-03   p_cons 2.091024e-01   p_joint 1.037600e-03

Joint ci ratio: 1.083319e-01	ci left: 9.818478e-04	ci right 1.095069e-03	k: 1307	n:1260000
Cons ci ratio: 6.791924e-03	ci left: 2.083831e-01	ci right 2.098040e-01	k: 263457	n:1260000
KS ci ratio: 9.632364e-02	ci left: 1.249455e-03	ci right 1.376664e-03	k: 1653	n:1260000
NLE1   1260000 perm   802 sec   (1572 perm/sec)   p_kst 1.311905e-03   p_cons 2.090929e-01   p_joint 1.037302e-03

Joint ci ratio: 1.079202e-01	ci left: 9.817778e-04	ci right 1.094533e-03	k: 1317	n:1270000
Cons ci ratio: 6.766000e-03	ci left: 2.083435e-01	ci right 2.097587e-01	k: 265494	n:1270000
KS ci ratio: 9.594733e-02	ci left: 1.249607e-03	ci right 1.376307e-03	k: 1666	n:1270000
NLE1   1270000 perm   812 sec   (1563 perm/sec)   p_kst 1.311811e-03   p_cons 2.090504e-01   p_joint 1.037008e-03

Joint ci ratio: 1.075537e-01	ci left: 9.809494e-04	ci right 1.093203e-03	k: 1326	n:1280000
Cons ci ratio: 6.740769e-03	ci left: 2.082850e-01	ci right 2.096945e-01	k: 267506	n:1280000
KS ci ratio: 9.549005e-02	ci left: 1.252045e-03	ci right 1.378353e-03	k: 1682	n:1280000
NLE1   1280000 perm   823 sec   (1555 perm/sec)   p_kst 1.314062e-03   p_cons 2.089891e-01   p_joint 1.035937e-03

Joint ci ratio: 1.073115e-01	ci left: 9.778712e-04	ci right 1.089505e-03	k: 1332	n:1290000
Cons ci ratio: 6.715062e-03	ci left: 2.082646e-01	ci right 2.096685e-01	k: 269566	n:1290000
KS ci ratio: 9.517960e-02	ci left: 1.250663e-03	ci right 1.376399e-03	k: 1693	n:1290000
NLE1   1290000 perm   835 sec   (1544 perm/sec)   p_kst 1.312403e-03   p_cons 2.089659e-01   p_joint 1.032558e-03

Joint ci ratio: 1.067919e-01	ci left: 9.800814e-04	ci right 1.091392e-03	k: 1345	n:1300000
Cons ci ratio: 6.688853e-03	ci left: 2.082837e-01	ci right 2.096823e-01	k: 271677	n:1300000
KS ci ratio: 9.484430e-02	ci left: 1.250054e-03	ci right 1.375261e-03	k: 1705	n:1300000
NLE1   1300000 perm   847 sec   (1534 perm/sec)   p_kst 1.311538e-03   p_cons 2.089823e-01   p_joint 1.034615e-03

Joint ci ratio: 1.065943e-01	ci left: 9.763147e-04	ci right 1.086979e-03	k: 1350	n:1310000
Cons ci ratio: 6.663594e-03	ci left: 2.082705e-01	ci right 2.096637e-01	k: 273746	n:1310000
KS ci ratio: 9.470591e-02	ci left: 1.244238e-03	ci right 1.368671e-03	k: 1710	n:1310000
NLE1   1310000 perm   860 sec   (1523 perm/sec)   p_kst 1.305344e-03   p_cons 2.089664e-01   p_joint 1.030534e-03

Joint ci ratio: 1.062411e-01	ci left: 9.755551e-04	ci right 1.085744e-03	k: 1359	n:1320000
Cons ci ratio: 6.638240e-03	ci left: 2.082764e-01	ci right 2.096643e-01	k: 275840	n:1320000
KS ci ratio: 9.434817e-02	ci left: 1.244428e-03	ci right 1.368383e-03	k: 1723	n:1320000
NLE1   1320000 perm   873 sec   (1512 perm/sec)   p_kst 1.305303e-03   p_cons 2.089697e-01   p_joint 1.029545e-03

Joint ci ratio: 1.057368e-01	ci left: 9.777355e-04	ci right 1.087614e-03	k: 1372	n:1330000
Cons ci ratio: 6.612360e-03	ci left: 2.083228e-01	ci right 2.097056e-01	k: 277988	n:1330000
KS ci ratio: 9.404868e-02	ci left: 1.243147e-03	ci right 1.366560e-03	k: 1734	n:1330000
NLE1   1330000 perm   885 sec   (1502 perm/sec)   p_kst 1.303759e-03   p_cons 2.090135e-01   p_joint 1.031579e-03

Joint ci ratio: 1.052777e-01	ci left: 9.791579e-04	ci right 1.088689e-03	k: 1384	n:1340000
Cons ci ratio: 6.587628e-03	ci left: 2.083260e-01	ci right 2.097036e-01	k: 280079	n:1340000
KS ci ratio: 9.359114e-02	ci left: 1.246259e-03	ci right 1.369346e-03	k: 1751	n:1340000
NLE1   1340000 perm   898 sec   (1492 perm/sec)   p_kst 1.306716e-03   p_cons 2.090142e-01   p_joint 1.032836e-03

Joint ci ratio: 1.048997e-01	ci left: 9.791176e-04	ci right 1.088226e-03	k: 1394	n:1350000
Cons ci ratio: 6.562275e-03	ci left: 2.083743e-01	ci right 2.097469e-01	k: 282231	n:1350000
KS ci ratio: 9.321940e-02	ci left: 1.247155e-03	ci right 1.369815e-03	k: 1765	n:1350000
NLE1   1350000 perm   911 sec   (1483 perm/sec)   p_kst 1.307407e-03   p_cons 2.090600e-01   p_joint 1.032593e-03

Joint ci ratio: 1.045630e-01	ci left: 9.783625e-04	ci right 1.087016e-03	k: 1403	n:1360000
Cons ci ratio: 6.538244e-03	ci left: 2.083698e-01	ci right 2.097373e-01	k: 284312	n:1360000
KS ci ratio: 9.295669e-02	ci left: 1.245167e-03	ci right 1.367267e-03	k: 1775	n:1360000
NLE1   1360000 perm   924 sec   (1472 perm/sec)   p_kst 1.305147e-03   p_cons 2.090529e-01   p_joint 1.031618e-03

Joint ci ratio: 1.042295e-01	ci left: 9.776190e-04	ci right 1.085822e-03	k: 1412	n:1370000
Cons ci ratio: 6.514878e-03	ci left: 2.083449e-01	ci right 2.097074e-01	k: 286365	n:1370000
KS ci ratio: 9.267022e-02	ci left: 1.243921e-03	ci right 1.365503e-03	k: 1786	n:1370000
NLE1   1370000 perm   937 sec   (1462 perm/sec)   p_kst 1.303650e-03   p_cons 2.090255e-01   p_joint 1.030657e-03

Joint ci ratio: 1.038627e-01	ci left: 9.775926e-04	ci right 1.085389e-03	k: 1422	n:1380000
Cons ci ratio: 6.490651e-03	ci left: 2.083769e-01	ci right 2.097345e-01	k: 288496	n:1380000
KS ci ratio: 9.230930e-02	ci left: 1.244817e-03	ci right 1.365987e-03	k: 1800	n:1380000
NLE1   1380000 perm   950 sec   (1453 perm/sec)   p_kst 1.304348e-03   p_cons 2.090551e-01   p_joint 1.030435e-03

Joint ci ratio: 1.034635e-01	ci left: 9.782680e-04	ci right 1.085699e-03	k: 1433	n:1390000
Cons ci ratio: 6.467691e-03	ci left: 2.083574e-01	ci right 2.097100e-01	k: 290556	n:1390000
KS ci ratio: 9.195257e-02	ci left: 1.245701e-03	ci right 1.366464e-03	k: 1814	n:1390000
NLE1   1390000 perm   963 sec   (1443 perm/sec)   p_kst 1.305036e-03   p_cons 2.090331e-01   p_joint 1.030935e-03

Joint ci ratio: 1.031046e-01	ci left: 9.782388e-04	ci right 1.085271e-03	k: 1443	n:1400000
Cons ci ratio: 6.445697e-03	ci left: 2.083010e-01	ci right 2.096487e-01	k: 292564	n:1400000
KS ci ratio: 9.165013e-02	ci left: 1.245178e-03	ci right 1.365472e-03	k: 1826	n:1400000
NLE1   1400000 perm   976 sec   (1434 perm/sec)   p_kst 1.304286e-03   p_cons 2.089743e-01   p_joint 1.030714e-03

Joint ci ratio: 1.025379e-01	ci left: 9.823567e-04	ci right 1.089213e-03	k: 1459	n:1410000
Cons ci ratio: 6.423347e-03	ci left: 2.082753e-01	ci right 2.096181e-01	k: 294614	n:1410000
KS ci ratio: 9.125134e-02	ci left: 1.247435e-03	ci right 1.367394e-03	k: 1842	n:1410000
NLE1   1410000 perm   990 sec   (1425 perm/sec)   p_kst 1.306383e-03   p_cons 2.089461e-01   p_joint 1.034752e-03

Joint ci ratio: 1.022931e-01	ci left: 9.802420e-04	ci right 1.086599e-03	k: 1466	n:1420000
Cons ci ratio: 6.400915e-03	ci left: 2.082661e-01	ci right 2.096041e-01	k: 296687	n:1420000
KS ci ratio: 9.100488e-02	ci left: 1.245532e-03	ci right 1.364967e-03	k: 1852	n:1420000
NLE1   1420000 perm   1003 sec   (1416 perm/sec)   p_kst 1.304225e-03   p_cons 2.089345e-01   p_joint 1.032394e-03

Joint ci ratio: 1.020501e-01	ci left: 9.781571e-04	ci right 1.084020e-03	k: 1473	n:1430000
Cons ci ratio: 6.378594e-03	ci left: 2.082633e-01	ci right 2.095966e-01	k: 298769	n:1430000
KS ci ratio: 9.076040e-02	ci left: 1.243656e-03	ci right 1.362574e-03	k: 1862	n:1430000
NLE1   1430000 perm   1016 sec   (1407 perm/sec)   p_kst 1.302098e-03   p_cons 2.089294e-01   p_joint 1.030070e-03

Joint ci ratio: 1.015687e-01	ci left: 9.808391e-04	ci right 1.086462e-03	k: 1487	n:1440000
Cons ci ratio: 6.357279e-03	ci left: 2.082203e-01	ci right 2.095489e-01	k: 300793	n:1440000
KS ci ratio: 9.022893e-02	ci left: 1.249952e-03	ci right 1.368735e-03	k: 1884	n:1440000
NLE1   1440000 perm   1030 sec   (1398 perm/sec)   p_kst 1.308333e-03   p_cons 2.088840e-01   p_joint 1.032639e-03

Joint ci ratio: 1.010941e-01	ci left: 9.834852e-04	ci right 1.088869e-03	k: 1501	n:1450000
Cons ci ratio: 6.334525e-03	ci left: 2.082640e-01	ci right 2.095882e-01	k: 302942	n:1450000
KS ci ratio: 8.975382e-02	ci left: 1.254814e-03	ci right 1.373399e-03	k: 1904	n:1450000
NLE1   1450000 perm   1044 sec   (1389 perm/sec)   p_kst 1.313103e-03   p_cons 2.089255e-01   p_joint 1.035172e-03

Joint ci ratio: 1.007926e-01	ci left: 9.827578e-04	ci right 1.087731e-03	k: 1510	n:1460000
Cons ci ratio: 6.313504e-03	ci left: 2.082292e-01	ci right 2.095487e-01	k: 304977	n:1460000
KS ci ratio: 8.947250e-02	ci left: 1.254255e-03	ci right 1.372395e-03	k: 1916	n:1460000
NLE1   1460000 perm   1057 sec   (1381 perm/sec)   p_kst 1.312329e-03   p_cons 2.088884e-01   p_joint 1.034247e-03

Joint ci ratio: 1.005933e-01	ci left: 9.800511e-04	ci right 1.084516e-03	k: 1516	n:1470000
Cons ci ratio: 6.291616e-03	ci left: 2.082512e-01	ci right 2.095663e-01	k: 307095	n:1470000
KS ci ratio: 8.928654e-02	ci left: 1.251043e-03	ci right 1.368623e-03	k: 1924	n:1470000
NLE1   1470000 perm   1070 sec   (1374 perm/sec)   p_kst 1.308844e-03   p_cons 2.089082e-01   p_joint 1.031293e-03

Joint ci ratio: 1.003292e-01	ci left: 9.786987e-04	ci right 1.082729e-03	k: 1524	n:1480000
Cons ci ratio: 6.270236e-03	ci left: 2.082581e-01	ci right 2.095687e-01	k: 309191	n:1480000
KS ci ratio: 8.903259e-02	ci left: 1.249856e-03	ci right 1.366974e-03	k: 1935	n:1480000
NLE1   1480000 perm   1082 sec   (1368 perm/sec)   p_kst 1.307432e-03   p_cons 2.089128e-01   p_joint 1.029730e-03

Joint ci ratio: 1.011292e-01	ci left: 9.564281e-04	ci right 1.058950e-03	k: 1500	n:1490000
Cons ci ratio: 6.249199e-03	ci left: 2.082582e-01	ci right 2.095644e-01	k: 311277	n:1490000
KS ci ratio: 8.859872e-02	ci left: 1.253937e-03	ci right 1.370834e-03	k: 1954	n:1490000
NLE1   1490000 perm   1094 sec   (1362 perm/sec)   p_kst 1.311409e-03   p_cons 2.089107e-01   p_joint 1.006711e-03

Joint ci ratio: 1.007940e-01	ci left: 9.565502e-04	ci right 1.058725e-03	k: 1510	n:1500000
Cons ci ratio: 6.228473e-03	ci left: 2.082530e-01	ci right 2.095548e-01	k: 313355	n:1500000
KS ci ratio: 8.821589e-02	ci left: 1.256660e-03	ci right 1.373279e-03	k: 1971	n:1500000
NLE1   1500000 perm   1107 sec   (1355 perm/sec)   p_kst 1.314000e-03   p_cons 2.089033e-01   p_joint 1.006667e-03

Joint ci ratio: 1.005946e-01	ci left: 9.540888e-04	ci right 1.055788e-03	k: 1516	n:1510000
Cons ci ratio: 6.208014e-03	ci left: 2.082445e-01	ci right 2.095420e-01	k: 315428	n:1510000
KS ci ratio: 8.797094e-02	ci left: 1.255462e-03	ci right 1.371630e-03	k: 1982	n:1510000
NLE1   1510000 perm   1120 sec   (1348 perm/sec)   p_kst 1.312583e-03   p_cons 2.088927e-01   p_joint 1.003974e-03

Joint ci ratio: 1.002319e-01	ci left: 9.548671e-04	ci right 1.056260e-03	k: 1527	n:1520000
Cons ci ratio: 6.187768e-03	ci left: 2.082356e-01	ci right 2.095287e-01	k: 317500	n:1520000
KS ci ratio: 8.764004e-02	ci left: 1.256854e-03	ci right 1.372691e-03	k: 1997	n:1520000
NLE1   1520000 perm   1134 sec   (1340 perm/sec)   p_kst 1.313816e-03   p_cons 2.088816e-01   p_joint 1.004605e-03

Joint ci ratio: 1.001011e-01	ci left: 9.511749e-04	ci right 1.052036e-03	k: 1531	n:1530000
Cons ci ratio: 6.168304e-03	ci left: 2.081954e-01	ci right 2.094842e-01	k: 319524	n:1530000
KS ci ratio: 8.746526e-02	ci left: 1.253754e-03	ci right 1.369062e-03	k: 2005	n:1530000
NLE1   1530000 perm   1149 sec   (1332 perm/sec)   p_kst 1.310458e-03   p_cons 2.088392e-01   p_joint 1.000654e-03

Joint ci ratio: 9.984086e-02	ci left: 9.500633e-04	ci right 1.050530e-03	k: 1539	n:1540000
Cons ci ratio: 6.148056e-03	ci left: 2.082076e-01	ci right 2.094922e-01	k: 321628	n:1540000
KS ci ratio: 8.714001e-02	ci left: 1.255140e-03	ci right 1.370125e-03	k: 2020	n:1540000
NLE1   1540000 perm   1163 sec   (1325 perm/sec)   p_kst 1.311688e-03   p_cons 2.088494e-01   p_joint 9.993506e-04

Outputting figure to mutsig2_images.part000000000115/NLE1.4_1510_1540000_0.0013117_0.20885_0.00099935.png
                gene_name: NLE1
               theta_stop: 0.100 
                    nperm: 1540000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.00100 
     ci_joint_bounds_left: 0.00095 
    ci_joint_bounds_right: 0.0011 

Current progress: 55 percent done.
NLGN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
Cons ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
KS ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
NLGN2   10000 perm   2 sec   (5881 perm/sec)   p_kst 5.900000e-03   p_cons 1.486000e-01   p_joint 5.900000e-03

Joint ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
Cons ci ratio: 6.748443e-02	ci left: 1.394570e-01	ci right 1.492467e-01	k: 2886	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
NLGN2   20000 perm   4 sec   (5399 perm/sec)   p_kst 5.400000e-03   p_cons 1.443000e-01   p_joint 5.950000e-03

Joint ci ratio: 2.670038e-01	ci left: 6.181212e-03	ci right 8.116082e-03	k: 213	n:30000
Cons ci ratio: 5.557061e-02	ci left: 1.382989e-01	ci right 1.462371e-01	k: 4267	n:30000
KS ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
NLGN2   30000 perm   6 sec   (5174 perm/sec)   p_kst 5.133333e-03   p_cons 1.422333e-01   p_joint 7.100000e-03

Joint ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
Cons ci ratio: 5.009648e-02	ci left: 1.294144e-01	ci right 1.360890e-01	k: 5309	n:40000
KS ci ratio: 2.724118e-01	ci left: 4.448864e-03	ci right 5.874430e-03	k: 205	n:40000
NLGN2   40000 perm   8 sec   (5034 perm/sec)   p_kst 5.125000e-03   p_cons 1.327250e-01   p_joint 1.100000e-02

Joint ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
Cons ci ratio: 4.455458e-02	ci left: 1.310650e-01	ci right 1.370575e-01	k: 6702	n:50000
KS ci ratio: 2.410786e-01	ci left: 4.626033e-03	ci right 5.912435e-03	k: 262	n:50000
NLGN2   50000 perm   10 sec   (4924 perm/sec)   p_kst 5.240000e-03   p_cons 1.340400e-01   p_joint 7.620000e-03

Joint ci ratio: 1.401722e-01	ci left: 1.196410e-02	ci right 1.378347e-02	k: 771	n:60000
Cons ci ratio: 4.066854e-02	ci left: 1.313498e-01	ci right 1.368190e-01	k: 8044	n:60000
KS ci ratio: 2.107438e-01	ci left: 5.129090e-03	ci right 6.352797e-03	k: 343	n:60000
NLGN2   60000 perm   12 sec   (4821 perm/sec)   p_kst 5.716667e-03   p_cons 1.340667e-01   p_joint 1.285000e-02

Joint ci ratio: 1.989705e-01	ci left: 4.965560e-03	ci right 6.076034e-03	k: 385	n:70000
Cons ci ratio: 3.767226e-02	ci left: 1.314278e-01	ci right 1.364883e-01	k: 9376	n:70000
KS ci ratio: 1.987118e-01	ci left: 4.979138e-03	ci right 6.091025e-03	k: 386	n:70000
NLGN2   70000 perm   15 sec   (4732 perm/sec)   p_kst 5.514286e-03   p_cons 1.339429e-01   p_joint 5.500000e-03

Joint ci ratio: 1.928608e-01	ci left: 4.641961e-03	ci right 5.644442e-03	k: 410	n:80000
Cons ci ratio: 3.517776e-02	ci left: 1.319939e-01	ci right 1.367327e-01	k: 10748	n:80000
KS ci ratio: 1.842690e-01	ci left: 5.106568e-03	ci right 6.154774e-03	k: 449	n:80000
NLGN2   80000 perm   17 sec   (4643 perm/sec)   p_kst 5.612500e-03   p_cons 1.343500e-01   p_joint 5.125000e-03

Joint ci ratio: 1.697709e-01	ci left: 5.388797e-03	ci right 6.399006e-03	k: 529	n:90000
Cons ci ratio: 3.317960e-02	ci left: 1.320345e-01	ci right 1.365002e-01	k: 12083	n:90000
KS ci ratio: 1.758835e-01	ci left: 5.006007e-03	ci right 5.981837e-03	k: 493	n:90000
NLGN2   90000 perm   20 sec   (4561 perm/sec)   p_kst 5.477778e-03   p_cons 1.342556e-01   p_joint 5.877778e-03

Joint ci ratio: 1.618751e-01	ci left: 5.357923e-03	ci right 6.311083e-03	k: 582	n:100000
Cons ci ratio: 3.149953e-02	ci left: 1.319837e-01	ci right 1.362176e-01	k: 13409	n:100000
KS ci ratio: 1.676100e-01	ci left: 4.983917e-03	ci right 5.905126e-03	k: 543	n:100000
NLGN2   100000 perm   22 sec   (4485 perm/sec)   p_kst 5.430000e-03   p_cons 1.340900e-01   p_joint 5.820000e-03

Joint ci ratio: 1.557280e-01	ci left: 5.281119e-03	ci right 6.181606e-03	k: 629	n:110000
Cons ci ratio: 3.002775e-02	ci left: 1.321275e-01	ci right 1.361645e-01	k: 14755	n:110000
KS ci ratio: 1.616398e-01	ci left: 4.888187e-03	ci right 5.756390e-03	k: 584	n:110000
NLGN2   110000 perm   25 sec   (4406 perm/sec)   p_kst 5.309091e-03   p_cons 1.341364e-01   p_joint 5.718182e-03

Joint ci ratio: 1.553939e-01	ci left: 4.864970e-03	ci right 5.692549e-03	k: 632	n:120000
Cons ci ratio: 2.877051e-02	ci left: 1.320442e-01	ci right 1.359069e-01	k: 16076	n:120000
KS ci ratio: 1.544160e-01	ci left: 4.929065e-03	ci right 5.761782e-03	k: 640	n:120000
NLGN2   120000 perm   28 sec   (4328 perm/sec)   p_kst 5.333333e-03   p_cons 1.339667e-01   p_joint 5.266667e-03

Joint ci ratio: 1.510515e-01	ci left: 4.764426e-03	ci right 5.550203e-03	k: 669	n:130000
Cons ci ratio: 2.761505e-02	ci left: 1.323437e-01	ci right 1.360572e-01	k: 17445	n:130000
KS ci ratio: 1.489433e-01	ci left: 4.905121e-03	ci right 5.701806e-03	k: 688	n:130000
NLGN2   130000 perm   31 sec   (4261 perm/sec)   p_kst 5.292308e-03   p_cons 1.341923e-01   p_joint 5.146154e-03

Joint ci ratio: 1.473681e-01	ci left: 4.657881e-03	ci right 5.405702e-03	k: 703	n:140000
Cons ci ratio: 2.663428e-02	ci left: 1.322054e-01	ci right 1.357812e-01	k: 18758	n:140000
KS ci ratio: 1.428495e-01	ci left: 4.967697e-03	ci right 5.738722e-03	k: 748	n:140000
NLGN2   140000 perm   33 sec   (4199 perm/sec)   p_kst 5.342857e-03   p_cons 1.339857e-01   p_joint 5.021429e-03

Joint ci ratio: 1.529491e-01	ci left: 4.026441e-03	ci right 4.699606e-03	k: 653	n:150000
Cons ci ratio: 2.573480e-02	ci left: 1.322334e-01	ci right 1.356874e-01	k: 20093	n:150000
KS ci ratio: 1.381356e-01	ci left: 4.971001e-03	ci right 5.714983e-03	k: 800	n:150000
NLGN2   150000 perm   36 sec   (4135 perm/sec)   p_kst 5.333333e-03   p_cons 1.339533e-01   p_joint 4.353333e-03

Joint ci ratio: 1.541580e-01	ci left: 3.714643e-03	ci right 4.341039e-03	k: 643	n:160000
Cons ci ratio: 2.492608e-02	ci left: 1.322100e-01	ci right 1.355533e-01	k: 21420	n:160000
KS ci ratio: 1.340969e-01	ci left: 4.956132e-03	ci right 5.674472e-03	k: 849	n:160000
NLGN2   160000 perm   39 sec   (4076 perm/sec)   p_kst 5.306250e-03   p_cons 1.338750e-01   p_joint 4.018750e-03

Joint ci ratio: 1.277070e-01	ci left: 5.159642e-03	ci right 5.869146e-03	k: 936	n:170000
Cons ci ratio: 2.419708e-02	ci left: 1.321148e-01	ci right 1.353565e-01	k: 22734	n:170000
KS ci ratio: 1.298134e-01	ci left: 4.988827e-03	ci right 5.687029e-03	k: 906	n:170000
NLGN2   170000 perm   42 sec   (4021 perm/sec)   p_kst 5.329412e-03   p_cons 1.337294e-01   p_joint 5.505882e-03

Joint ci ratio: 9.332986e-02	ci left: 9.252359e-03	ci right 1.016354e-02	k: 1746	n:180000
Cons ci ratio: 2.350483e-02	ci left: 1.322636e-01	ci right 1.354149e-01	k: 24090	n:180000
KS ci ratio: 1.262454e-01	ci left: 4.991308e-03	ci right 5.669219e-03	k: 958	n:180000
NLGN2   180000 perm   45 sec   (3961 perm/sec)   p_kst 5.322222e-03   p_cons 1.338333e-01   p_joint 9.700000e-03

Joint ci ratio: 1.002757e-01	ci left: 7.578664e-03	ci right 8.383825e-03	k: 1515	n:190000
Cons ci ratio: 2.287086e-02	ci left: 1.323770e-01	ci right 1.354448e-01	k: 25442	n:190000
KS ci ratio: 1.229563e-01	ci left: 4.993762e-03	ci right 5.653049e-03	k: 1010	n:190000
NLGN2   190000 perm   49 sec   (3906 perm/sec)   p_kst 5.315789e-03   p_cons 1.339053e-01   p_joint 7.973684e-03

Joint ci ratio: 9.523545e-02	ci left: 7.999773e-03	ci right 8.804573e-03	k: 1679	n:200000
Cons ci ratio: 2.229902e-02	ci left: 1.323407e-01	ci right 1.353300e-01	k: 26766	n:200000
KS ci ratio: 1.191255e-01	ci left: 5.064094e-03	ci right 5.710369e-03	k: 1076	n:200000
NLGN2   200000 perm   52 sec   (3854 perm/sec)   p_kst 5.380000e-03   p_cons 1.338300e-01   p_joint 8.395000e-03

Joint ci ratio: 8.567048e-02	ci left: 9.448324e-03	ci right 1.029862e-02	k: 2072	n:210000
Cons ci ratio: 2.176043e-02	ci left: 1.323893e-01	ci right 1.353065e-01	k: 28107	n:210000
KS ci ratio: 1.161952e-01	ci left: 5.077145e-03	ci right 5.708054e-03	k: 1131	n:210000
NLGN2   210000 perm   55 sec   (3800 perm/sec)   p_kst 5.385714e-03   p_cons 1.338429e-01   p_joint 9.866667e-03

Joint ci ratio: 8.394933e-02	ci left: 9.401463e-03	ci right 1.022971e-02	k: 2158	n:220000
Cons ci ratio: 2.124783e-02	ci left: 1.325565e-01	ci right 1.354077e-01	k: 29475	n:220000
KS ci ratio: 1.133750e-01	ci left: 5.098021e-03	ci right 5.715120e-03	k: 1188	n:220000
NLGN2   220000 perm   59 sec   (3748 perm/sec)   p_kst 5.400000e-03   p_cons 1.339773e-01   p_joint 9.809091e-03

Joint ci ratio: 8.733784e-02	ci left: 8.303229e-03	ci right 9.065752e-03	k: 1996	n:230000
Cons ci ratio: 2.079046e-02	ci left: 1.324804e-01	ci right 1.352680e-01	k: 30790	n:230000
KS ci ratio: 1.113362e-01	ci left: 5.062291e-03	ci right 5.663321e-03	k: 1232	n:230000
NLGN2   230000 perm   62 sec   (3699 perm/sec)   p_kst 5.356522e-03   p_cons 1.338696e-01   p_joint 8.678261e-03

Joint ci ratio: 8.522761e-02	ci left: 8.364948e-03	ci right 9.113655e-03	k: 2096	n:240000
Cons ci ratio: 2.033618e-02	ci left: 1.326976e-01	ci right 1.354280e-01	k: 32174	n:240000
KS ci ratio: 1.088055e-01	ci left: 5.086379e-03	ci right 5.675663e-03	k: 1290	n:240000
NLGN2   240000 perm   66 sec   (3651 perm/sec)   p_kst 5.375000e-03   p_cons 1.340583e-01   p_joint 8.733333e-03

Joint ci ratio: 8.489629e-02	ci left: 8.096856e-03	ci right 8.818609e-03	k: 2113	n:250000
Cons ci ratio: 1.992999e-02	ci left: 1.326709e-01	ci right 1.353456e-01	k: 33501	n:250000
KS ci ratio: 1.068789e-01	ci left: 5.065850e-03	ci right 5.641709e-03	k: 1337	n:250000
NLGN2   250000 perm   69 sec   (3605 perm/sec)   p_kst 5.348000e-03   p_cons 1.340040e-01   p_joint 8.452000e-03

Joint ci ratio: 8.291664e-02	ci left: 8.169527e-03	ci right 8.879955e-03	k: 2215	n:260000
Cons ci ratio: 1.953975e-02	ci left: 1.327349e-01	ci right 1.353579e-01	k: 34851	n:260000
KS ci ratio: 1.044838e-01	ci left: 5.103173e-03	ci right 5.669477e-03	k: 1399	n:260000
NLGN2   260000 perm   73 sec   (3559 perm/sec)   p_kst 5.380769e-03   p_cons 1.340423e-01   p_joint 8.519231e-03

Joint ci ratio: 8.272308e-02	ci left: 7.906805e-03	ci right 8.592703e-03	k: 2226	n:270000
Cons ci ratio: 1.914623e-02	ci left: 1.331008e-01	ci right 1.356774e-01	k: 36284	n:270000
KS ci ratio: 1.024897e-01	ci left: 5.112599e-03	ci right 5.668469e-03	k: 1454	n:270000
NLGN2   270000 perm   77 sec   (3515 perm/sec)   p_kst 5.385185e-03   p_cons 1.343852e-01   p_joint 8.244444e-03

Joint ci ratio: 8.127649e-02	ci left: 7.904274e-03	ci right 8.577393e-03	k: 2306	n:280000
Cons ci ratio: 1.881275e-02	ci left: 1.329821e-01	ci right 1.355112e-01	k: 37588	n:280000
KS ci ratio: 1.006392e-01	ci left: 5.117965e-03	ci right 5.663778e-03	k: 1508	n:280000
NLGN2   280000 perm   81 sec   (3474 perm/sec)   p_kst 5.385714e-03   p_cons 1.342429e-01   p_joint 8.235714e-03

Joint ci ratio: 9.124478e-02	ci left: 6.035468e-03	ci right 6.615843e-03	k: 1833	n:290000
Cons ci ratio: 1.849775e-02	ci left: 1.328514e-01	ci right 1.353352e-01	k: 38886	n:290000
KS ci ratio: 9.838043e-02	ci left: 5.176864e-03	ci right 5.715851e-03	k: 1578	n:290000
NLGN2   290000 perm   84 sec   (3432 perm/sec)   p_kst 5.441379e-03   p_cons 1.340897e-01   p_joint 6.320690e-03

Outputting figure to mutsig2_images.part000000000115/NLGN2.4_2536_290000_0.0054414_0.13409_0.0063207.png
                gene_name: NLGN2
               theta_stop: 0.098 
                    nperm: 290000 
                     p_ks: 0.0054 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0057 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 56 percent done.
NLGN4Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
Cons ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
KS ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
NLGN4Y   10000 perm   2 sec   (6049 perm/sec)   p_kst 3.337000e-01   p_cons 4.107000e-01   p_joint 4.694000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN4Y.4_2625_10000_0.3337_0.4107_0.4694.png
                gene_name: NLGN4Y
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 58 percent done.
NLRP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
Cons ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
KS ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
NLRP6   10000 perm   2 sec   (5887 perm/sec)   p_kst 5.738000e-01   p_cons 6.470000e-01   p_joint 7.470000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP6.4_2710_10000_0.5738_0.647_0.747.png
                gene_name: NLRP6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 60 percent done.
NMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
NMD3   10000 perm   2 sec   (6508 perm/sec)   p_kst 4.200000e-01   p_cons 1.900000e-02   p_joint 7.710000e-02

Joint ci ratio: 7.250885e-02	ci left: 1.228577e-01	ci right 1.321509e-01	k: 2549	n:20000
Cons ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
KS ci ratio: 3.302221e-02	ci left: 4.064635e-01	ci right 4.201617e-01	k: 8266	n:20000
NMD3   20000 perm   3 sec   (5909 perm/sec)   p_kst 4.133000e-01   p_cons 1.950000e-02   p_joint 1.274500e-01

Joint ci ratio: 6.181537e-02	ci left: 1.145343e-01	ci right 1.218732e-01	k: 3545	n:30000
Cons ci ratio: 1.577530e-01	ci left: 1.857388e-02	ci right 2.178665e-02	k: 604	n:30000
KS ci ratio: 2.713457e-02	ci left: 4.046596e-01	ci right 4.158245e-01	k: 12307	n:30000
NMD3   30000 perm   5 sec   (5662 perm/sec)   p_kst 4.102333e-01   p_cons 2.013333e-02   p_joint 1.181667e-01

Joint ci ratio: 4.487134e-02	ci left: 1.566178e-01	ci right 1.638316e-01	k: 6408	n:40000
Cons ci ratio: 1.237396e-01	ci left: 2.295860e-02	ci right 2.601097e-02	k: 978	n:40000
KS ci ratio: 2.342368e-02	ci left: 4.069710e-01	ci right 4.166418e-01	k: 16472	n:40000
NMD3   40000 perm   7 sec   (5485 perm/sec)   p_kst 4.118000e-01   p_cons 2.445000e-02   p_joint 1.602000e-01

Joint ci ratio: 3.530425e-02	ci left: 1.942962e-01	ci right 2.012989e-01	k: 9889	n:50000
Cons ci ratio: 1.104338e-01	ci left: 2.322098e-02	ci right 2.595460e-02	k: 1228	n:50000
KS ci ratio: 2.100730e-02	ci left: 4.061835e-01	ci right 4.148269e-01	k: 20525	n:50000
NMD3   50000 perm   9 sec   (5346 perm/sec)   p_kst 4.105000e-01   p_cons 2.456000e-02   p_joint 1.977800e-01

Joint ci ratio: 3.697805e-02	ci left: 1.548251e-01	ci right 1.606747e-01	k: 9464	n:60000
Cons ci ratio: 1.001456e-01	ci left: 2.365163e-02	ci right 2.616128e-02	k: 1493	n:60000
KS ci ratio: 1.922205e-02	ci left: 4.054283e-01	ci right 4.133138e-01	k: 24562	n:60000
NMD3   60000 perm   11 sec   (5229 perm/sec)   p_kst 4.093667e-01   p_cons 2.488333e-02   p_joint 1.577333e-01

Joint ci ratio: 3.324738e-02	ci left: 1.629240e-01	ci right 1.684466e-01	k: 11597	n:70000
Cons ci ratio: 9.343407e-02	ci left: 2.338132e-02	ci right 2.568689e-02	k: 1716	n:70000
KS ci ratio: 1.727960e-02	ci left: 4.200212e-01	ci right 4.273565e-01	k: 29658	n:70000
NMD3   70000 perm   14 sec   (5115 perm/sec)   p_kst 4.236857e-01   p_cons 2.451429e-02   p_joint 1.656714e-01

Outputting figure to mutsig2_images.part000000000115/NMD3.4_1572_70000_0.42369_0.024514_0.16567.png
                gene_name: NMD3
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 62 percent done.
NME7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
Cons ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
KS ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
NME7   10000 perm   2 sec   (6611 perm/sec)   p_kst 3.353000e-01   p_cons 1.385000e-01   p_joint 2.026000e-01

Outputting figure to mutsig2_images.part000000000115/NME7.4_1179_10000_0.3353_0.1385_0.2026.png
                gene_name: NME7
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
NMUR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
Cons ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
KS ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
NMUR1   10000 perm   1 sec   (6894 perm/sec)   p_kst 2.524000e-01   p_cons 7.208000e-01   p_joint 4.094000e-01

Outputting figure to mutsig2_images.part000000000115/NMUR1.4_1293_10000_0.2524_0.7208_0.4094.png
                gene_name: NMUR1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 65 percent done.
NNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
Cons ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
KS ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
NNT   10000 perm   2 sec   (5813 perm/sec)   p_kst 4.890000e-01   p_cons 5.608000e-01   p_joint 5.920000e-01

Outputting figure to mutsig2_images.part000000000115/NNT.4_3345_10000_0.489_0.5608_0.592.png
                gene_name: NNT
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
NOC4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
Cons ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
KS ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
NOC4L   10000 perm   2 sec   (6304 perm/sec)   p_kst 5.569000e-01   p_cons 8.163000e-01   p_joint 7.180000e-01

Outputting figure to mutsig2_images.part000000000115/NOC4L.4_1611_10000_0.5569_0.8163_0.718.png
                gene_name: NOC4L
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 69 percent done.
NISCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
Cons ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
NISCH   10000 perm   2 sec   (5604 perm/sec)   p_kst 8.930000e-02   p_cons 2.402000e-01   p_joint 1.755000e-01

Joint ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
Cons ci ratio: 4.863866e-02	ci left: 2.391510e-01	ci right 2.511232e-01	k: 4902	n:20000
KS ci ratio: 8.898230e-02	ci left: 8.450079e-02	ci right 9.241933e-02	k: 1768	n:20000
NISCH   20000 perm   4 sec   (5080 perm/sec)   p_kst 8.840000e-02   p_cons 2.451000e-01   p_joint 1.030000e-01

Outputting figure to mutsig2_images.part000000000115/NISCH.3_4599_20000_0.0884_0.2451_0.103.png
                gene_name: NISCH
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 71 percent done.
NKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
NKD2   10000 perm   1 sec   (7037 perm/sec)   p_kst 7.860000e-02   p_cons 3.078000e-01   p_joint 1.822000e-01

Joint ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
Cons ci ratio: 4.068187e-02	ci left: 3.105533e-01	ci right 3.235000e-01	k: 6340	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
NKD2   20000 perm   3 sec   (6339 perm/sec)   p_kst 7.530000e-02   p_cons 3.170000e-01   p_joint 1.110000e-01

Outputting figure to mutsig2_images.part000000000115/NKD2.3_1396_20000_0.0753_0.317_0.111.png
                gene_name: NKD2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 73 percent done.
NKX2-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
Cons ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
KS ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
NKX2-5   10000 perm   1 sec   (7032 perm/sec)   p_kst 4.454000e-01   p_cons 6.454000e-01   p_joint 8.351000e-01

Outputting figure to mutsig2_images.part000000000115/NKX2-5.3_1118_10000_0.4454_0.6454_0.8351.png
                gene_name: NKX2-5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 75 percent done.
NLGN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
Cons ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
KS ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
NLGN3   10000 perm   2 sec   (6338 perm/sec)   p_kst 1.612000e-01   p_cons 8.657000e-01   p_joint 2.118000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN3.3_2575_10000_0.1612_0.8657_0.2118.png
                gene_name: NLGN3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 76 percent done.
NMNAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
Cons ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
KS ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
NMNAT2   10000 perm   1 sec   (7108 perm/sec)   p_kst 8.645000e-01   p_cons 3.890000e-01   p_joint 6.297000e-01

Outputting figure to mutsig2_images.part000000000115/NMNAT2.3_1042_10000_0.8645_0.389_0.6297.png
                gene_name: NMNAT2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 78 percent done.
NMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
KS ci ratio: 2.743434e-02	ci left: 6.618937e-01	ci right 6.804065e-01	k: 6712	n:10000
NMS   10000 perm   2 sec   (6459 perm/sec)   p_kst 6.712000e-01   p_cons 6.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMS.3_502_10000_0.6712_0.6319_1.png
                gene_name: NMS
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NOC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
NOC2L   10000 perm   2 sec   (5809 perm/sec)   p_kst 6.863000e-01   p_cons 3.318000e-01   p_joint 7.180000e-01

Outputting figure to mutsig2_images.part000000000115/NOC2L.3_2326_10000_0.6863_0.3318_0.718.png
                gene_name: NOC2L
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 82 percent done.
NOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
KS ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
NOD1   10000 perm   2 sec   (6085 perm/sec)   p_kst 5.601000e-01   p_cons 9.556000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NOD1.3_2906_10000_0.5601_0.9556_1.png
                gene_name: NOD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
Cons ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
KS ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
NIT1   10000 perm   1 sec   (7412 perm/sec)   p_kst 5.609000e-01   p_cons 2.213000e-01   p_joint 8.683000e-01

Outputting figure to mutsig2_images.part000000000115/NIT1.2_1088_10000_0.5609_0.2213_0.8683.png
                gene_name: NIT1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 85 percent done.
NKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
Cons ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
KS ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
NKAP   10000 perm   1 sec   (7302 perm/sec)   p_kst 6.790000e-01   p_cons 4.261000e-01   p_joint 4.657000e-01

Outputting figure to mutsig2_images.part000000000115/NKAP.2_1284_10000_0.679_0.4261_0.4657.png
                gene_name: NKAP
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 87 percent done.
NKX2-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
Cons ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KS ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
NKX2-1   10000 perm   1 sec   (7282 perm/sec)   p_kst 1.766000e-01   p_cons 4.666000e-01   p_joint 6.925000e-01

Outputting figure to mutsig2_images.part000000000115/NKX2-1.2_1218_10000_0.1766_0.4666_0.6925.png
                gene_name: NKX2-1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 89 percent done.
NKX2-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
NKX2-3   10000 perm   1 sec   (7461 perm/sec)   p_kst 7.039000e-01   p_cons 2.100000e-03   p_joint 5.840000e-02

Joint ci ratio: 3.243481e-01	ci left: 6.075351e-03	ci right 8.471257e-03	k: 144	n:20000
Cons ci ratio: 6.527288e-01	ci left: 1.219232e-03	ci right 2.432994e-03	k: 35	n:20000
KS ci ratio: 1.799451e-02	ci left: 6.971161e-01	ci right 7.098247e-01	k: 14070	n:20000
NKX2-3   20000 perm   3 sec   (6668 perm/sec)   p_kst 7.035000e-01   p_cons 1.750000e-03   p_joint 7.200000e-03

Joint ci ratio: 2.657559e-01	ci left: 6.243453e-03	ci right 8.187151e-03	k: 215	n:30000
Cons ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
KS ci ratio: 1.470197e-02	ci left: 6.980277e-01	ci right 7.083996e-01	k: 21097	n:30000
NKX2-3   30000 perm   5 sec   (6354 perm/sec)   p_kst 7.032333e-01   p_cons 2.000000e-03   p_joint 7.166667e-03

Joint ci ratio: 2.423137e-01	ci left: 5.712489e-03	ci right 7.310422e-03	k: 259	n:40000
Cons ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
KS ci ratio: 1.278294e-02	ci left: 6.970639e-01	ci right 7.060568e-01	k: 28063	n:40000
NKX2-3   40000 perm   7 sec   (6127 perm/sec)   p_kst 7.015750e-01   p_cons 1.900000e-03   p_joint 6.475000e-03

Joint ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
Cons ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
KS ci ratio: 1.144368e-02	ci left: 6.971663e-01	ci right 7.052104e-01	k: 35060	n:50000
NKX2-3   50000 perm   8 sec   (5940 perm/sec)   p_kst 7.012000e-01   p_cons 1.760000e-03   p_joint 6.860000e-03

Joint ci ratio: 1.941263e-01	ci left: 6.094584e-03	ci right 7.420469e-03	k: 404	n:60000
Cons ci ratio: 3.734115e-01	ci left: 1.491902e-03	ci right 2.191030e-03	k: 109	n:60000
KS ci ratio: 1.047738e-02	ci left: 6.962819e-01	ci right 7.036321e-01	k: 41998	n:60000
NKX2-3   60000 perm   10 sec   (5776 perm/sec)   p_kst 6.999667e-01   p_cons 1.816667e-03   p_joint 6.733333e-03

Joint ci ratio: 3.605584e-01	ci left: 1.382507e-03	ci right 2.002831e-03	k: 117	n:70000
Cons ci ratio: 5.487059e-01	ci left: 5.302017e-04	ci right 9.415896e-04	k: 50	n:70000
KS ci ratio: 9.709967e-03	ci left: 6.961313e-01	ci right 7.029379e-01	k: 48968	n:70000
NKX2-3   70000 perm   12 sec   (5620 perm/sec)   p_kst 6.995429e-01   p_cons 7.142857e-04   p_joint 1.671429e-03

Joint ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
Cons ci ratio: 5.190284e-01	ci left: 5.288145e-04	ci right 9.089132e-04	k: 56	n:80000
KS ci ratio: 9.076485e-03	ci left: 6.966480e-01	ci right 7.030125e-01	k: 55987	n:80000
NKX2-3   80000 perm   15 sec   (5492 perm/sec)   p_kst 6.998375e-01   p_cons 7.000000e-04   p_joint 1.350000e-03

Joint ci ratio: 3.898335e-01	ci left: 9.041330e-04	ci right 1.351246e-03	k: 100	n:90000
Cons ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
KS ci ratio: 8.569253e-03	ci left: 6.962476e-01	ci right 7.022507e-01	k: 62933	n:90000
NKX2-3   90000 perm   17 sec   (5376 perm/sec)   p_kst 6.992556e-01   p_cons 7.222222e-04   p_joint 1.111111e-03

Joint ci ratio: 3.735498e-01	ci left: 8.950862e-04	ci right 1.314717e-03	k: 109	n:100000
Cons ci ratio: 4.650509e-01	ci left: 5.457237e-04	ci right 8.843263e-04	k: 70	n:100000
KS ci ratio: 8.127107e-03	ci left: 6.965273e-01	ci right 7.022211e-01	k: 69938	n:100000
NKX2-3   100000 perm   19 sec   (5270 perm/sec)   p_kst 6.993800e-01   p_cons 7.000000e-04   p_joint 1.090000e-03

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 4.494974e-01	ci left: 5.363298e-04	ci right 8.545911e-04	k: 75	n:110000
KS ci ratio: 7.748026e-03	ci left: 6.967079e-01	ci right 7.021361e-01	k: 76937	n:110000
NKX2-3   110000 perm   21 sec   (5167 perm/sec)   p_kst 6.994273e-01   p_cons 6.818182e-04   p_joint 1.045455e-03

Joint ci ratio: 3.462960e-01	ci left: 8.823588e-04	ci right 1.259089e-03	k: 127	n:120000
Cons ci ratio: 4.250313e-01	ci left: 5.583846e-04	ci right 8.665754e-04	k: 84	n:120000
KS ci ratio: 7.415126e-03	ci left: 6.969973e-01	ci right 7.021931e-01	k: 83952	n:120000
NKX2-3   120000 perm   24 sec   (5070 perm/sec)   p_kst 6.996000e-01   p_cons 7.000000e-04   p_joint 1.058333e-03

Joint ci ratio: 3.299432e-01	ci left: 9.060015e-04	ci right 1.270688e-03	k: 140	n:130000
Cons ci ratio: 4.041694e-01	ci left: 5.774453e-04	ci right 8.763239e-04	k: 93	n:130000
KS ci ratio: 7.122139e-03	ci left: 6.972231e-01	ci right 7.022142e-01	k: 90964	n:130000
NKX2-3   130000 perm   26 sec   (4980 perm/sec)   p_kst 6.997231e-01   p_cons 7.153846e-04   p_joint 1.076923e-03

Joint ci ratio: 3.220505e-01	ci left: 8.871945e-04	ci right 1.234005e-03	k: 147	n:140000
Cons ci ratio: 3.918586e-01	ci left: 5.747668e-04	ci right 8.608549e-04	k: 99	n:140000
KS ci ratio: 6.849564e-03	ci left: 6.981431e-01	ci right 7.029486e-01	k: 98077	n:140000
NKX2-3   140000 perm   29 sec   (4874 perm/sec)   p_kst 7.005500e-01   p_cons 7.071429e-04   p_joint 1.050000e-03

Joint ci ratio: 3.087724e-01	ci left: 9.078591e-04	ci right 1.245238e-03	k: 160	n:150000
Cons ci ratio: 3.788243e-01	ci left: 5.785959e-04	ci right 8.546297e-04	k: 106	n:150000
KS ci ratio: 6.615259e-03	ci left: 6.983552e-01	ci right 7.029970e-01	k: 105102	n:150000
NKX2-3   150000 perm   31 sec   (4790 perm/sec)   p_kst 7.006800e-01   p_cons 7.066667e-04   p_joint 1.066667e-03

Joint ci ratio: 2.978700e-01	ci left: 9.204131e-04	ci right 1.248098e-03	k: 172	n:160000
Cons ci ratio: 3.638298e-01	ci left: 5.934372e-04	ci right 8.626884e-04	k: 115	n:160000
KS ci ratio: 6.406516e-03	ci left: 6.983429e-01	ci right 7.028374e-01	k: 112095	n:160000
NKX2-3   160000 perm   34 sec   (4706 perm/sec)   p_kst 7.005938e-01   p_cons 7.187500e-04   p_joint 1.075000e-03

Joint ci ratio: 3.242812e-01	ci left: 7.198097e-04	ci right 1.003541e-03	k: 145	n:170000
Cons ci ratio: 3.547717e-01	ci left: 5.906375e-04	ci right 8.504090e-04	k: 121	n:170000
KS ci ratio: 6.207038e-03	ci left: 6.989647e-01	ci right 7.033225e-01	k: 119195	n:170000
NKX2-3   170000 perm   37 sec   (4631 perm/sec)   p_kst 7.011471e-01   p_cons 7.117647e-04   p_joint 8.529412e-04

Joint ci ratio: 2.872790e-01	ci left: 8.850664e-04	ci right 1.186931e-03	k: 185	n:180000
Cons ci ratio: 3.504927e-01	ci left: 5.730138e-04	ci right 8.213029e-04	k: 124	n:180000
KS ci ratio: 6.028438e-03	ci left: 6.992854e-01	ci right 7.035192e-01	k: 126253	n:180000
NKX2-3   180000 perm   39 sec   (4558 perm/sec)   p_kst 7.014056e-01   p_cons 6.888889e-04   p_joint 1.027778e-03

Joint ci ratio: 3.023000e-01	ci left: 7.507394e-04	ci right 1.022756e-03	k: 167	n:190000
Cons ci ratio: 3.335705e-01	ci left: 6.054047e-04	ci right 8.523461e-04	k: 137	n:190000
KS ci ratio: 5.865517e-03	ci left: 6.994947e-01	ci right 7.036149e-01	k: 133296	n:190000
NKX2-3   190000 perm   42 sec   (4484 perm/sec)   p_kst 7.015579e-01   p_cons 7.210526e-04   p_joint 8.789474e-04

Joint ci ratio: 2.953503e-01	ci left: 7.502043e-04	ci right 1.014608e-03	k: 175	n:200000
Cons ci ratio: 3.265482e-01	ci left: 6.026487e-04	ci right 8.422061e-04	k: 143	n:200000
KS ci ratio: 5.719497e-03	ci left: 6.993639e-01	ci right 7.033803e-01	k: 140275	n:200000
NKX2-3   200000 perm   45 sec   (4416 perm/sec)   p_kst 7.013750e-01   p_cons 7.150000e-04   p_joint 8.750000e-04

Joint ci ratio: 2.835116e-01	ci left: 7.807276e-04	ci right 1.042888e-03	k: 190	n:210000
Cons ci ratio: 3.117404e-01	ci left: 6.352825e-04	ci right 8.740848e-04	k: 157	n:210000
KS ci ratio: 5.580627e-03	ci left: 6.994900e-01	ci right 7.034092e-01	k: 147305	n:210000
NKX2-3   210000 perm   48 sec   (4349 perm/sec)   p_kst 7.014524e-01   p_cons 7.476190e-04   p_joint 9.047619e-04

Joint ci ratio: 2.690963e-01	ci left: 8.340891e-04	ci right 1.097526e-03	k: 211	n:220000
Cons ci ratio: 2.970562e-01	ci left: 6.735843e-04	ci right 9.126125e-04	k: 173	n:220000
KS ci ratio: 5.449452e-03	ci left: 6.997560e-01	ci right 7.035842e-01	k: 154368	n:220000
NKX2-3   220000 perm   51 sec   (4284 perm/sec)   p_kst 7.016727e-01   p_cons 7.863636e-04   p_joint 9.590909e-04

Joint ci ratio: 2.617879e-01	ci left: 8.465279e-04	ci right 1.105444e-03	k: 223	n:230000
Cons ci ratio: 2.888700e-01	ci left: 6.845825e-04	ci right 9.195967e-04	k: 183	n:230000
KS ci ratio: 5.328548e-03	ci left: 6.998865e-01	ci right 7.036301e-01	k: 161405	n:230000
NKX2-3   230000 perm   55 sec   (4217 perm/sec)   p_kst 7.017609e-01   p_cons 7.956522e-04   p_joint 9.695652e-04

Joint ci ratio: 2.561329e-01	ci left: 8.502186e-04	ci right 1.103749e-03	k: 233	n:240000
Cons ci ratio: 2.820537e-01	ci left: 6.908743e-04	ci right 9.214570e-04	k: 192	n:240000
KS ci ratio: 5.216491e-03	ci left: 6.999152e-01	ci right 7.035799e-01	k: 168420	n:240000
NKX2-3   240000 perm   58 sec   (4154 perm/sec)   p_kst 7.017500e-01   p_cons 8.000000e-04   p_joint 9.708333e-04

Joint ci ratio: 2.523872e-01	ci left: 8.424252e-04	ci right 1.089380e-03	k: 240	n:250000
Cons ci ratio: 2.770744e-01	ci left: 6.892766e-04	ci right 9.145567e-04	k: 199	n:250000
KS ci ratio: 5.110536e-03	ci left: 6.999984e-01	ci right 7.035889e-01	k: 175449	n:250000
NKX2-3   250000 perm   61 sec   (4092 perm/sec)   p_kst 7.017960e-01   p_cons 7.960000e-04   p_joint 9.600000e-04

Joint ci ratio: 2.488010e-01	ci left: 8.352562e-04	ci right 1.076092e-03	k: 247	n:260000
Cons ci ratio: 2.723498e-01	ci left: 6.878347e-04	ci right 9.081545e-04	k: 206	n:260000
KS ci ratio: 5.014054e-03	ci left: 6.998024e-01	ci right 7.033239e-01	k: 182407	n:260000
NKX2-3   260000 perm   64 sec   (4034 perm/sec)   p_kst 7.015654e-01   p_cons 7.923077e-04   p_joint 9.500000e-04

Joint ci ratio: 2.453635e-01	ci left: 8.286412e-04	ci right 1.063765e-03	k: 254	n:270000
Cons ci ratio: 2.678590e-01	ci left: 6.865297e-04	ci right 9.021966e-04	k: 213	n:270000
KS ci ratio: 4.920441e-03	ci left: 6.998256e-01	ci right 7.032812e-01	k: 189420	n:270000
NKX2-3   270000 perm   68 sec   (3977 perm/sec)   p_kst 7.015556e-01   p_cons 7.888889e-04   p_joint 9.407407e-04

Joint ci ratio: 2.434638e-01	ci left: 8.124568e-04	ci right 1.040934e-03	k: 258	n:280000
Cons ci ratio: 2.660033e-01	ci left: 6.720074e-04	ci right 8.814060e-04	k: 216	n:280000
KS ci ratio: 4.832007e-03	ci left: 6.998370e-01	ci right 7.032303e-01	k: 196430	n:280000
NKX2-3   280000 perm   71 sec   (3920 perm/sec)   p_kst 7.015357e-01   p_cons 7.714286e-04   p_joint 9.214286e-04

Joint ci ratio: 2.371371e-01	ci left: 8.298116e-04	ci right 1.056215e-03	k: 272	n:290000
Cons ci ratio: 2.589381e-01	ci left: 6.874929e-04	ci right 8.951069e-04	k: 228	n:290000
KS ci ratio: 4.753141e-03	ci left: 6.994094e-01	ci right 7.027452e-01	k: 203313	n:290000
NKX2-3   290000 perm   75 sec   (3866 perm/sec)   p_kst 7.010793e-01   p_cons 7.862069e-04   p_joint 9.379310e-04

Joint ci ratio: 2.354208e-01	ci left: 8.146945e-04	ci right 1.035130e-03	k: 276	n:300000
Cons ci ratio: 2.567076e-01	ci left: 6.770477e-04	ci right 8.794638e-04	k: 232	n:300000
KS ci ratio: 4.672314e-03	ci left: 6.995217e-01	ci right 7.028011e-01	k: 210349	n:300000
NKX2-3   300000 perm   79 sec   (3814 perm/sec)   p_kst 7.011633e-01   p_cons 7.733333e-04   p_joint 9.200000e-04

Joint ci ratio: 2.304804e-01	ci left: 8.248654e-04	ci right 1.042703e-03	k: 288	n:310000
Cons ci ratio: 2.518884e-01	ci left: 6.823898e-04	ci right 8.819723e-04	k: 241	n:310000
KS ci ratio: 4.595580e-03	ci left: 6.996175e-01	ci right 7.028432e-01	k: 217382	n:310000
NKX2-3   310000 perm   82 sec   (3760 perm/sec)   p_kst 7.012323e-01   p_cons 7.774194e-04   p_joint 9.290323e-04

Joint ci ratio: 2.269734e-01	ci left: 8.256020e-04	ci right 1.039852e-03	k: 297	n:320000
Cons ci ratio: 2.473308e-01	ci left: 6.874312e-04	ci right 8.842910e-04	k: 250	n:320000
KS ci ratio: 4.523216e-03	ci left: 6.996420e-01	ci right 7.028169e-01	k: 224394	n:320000
NKX2-3   320000 perm   86 sec   (3709 perm/sec)   p_kst 7.012312e-01   p_cons 7.812500e-04   p_joint 9.281250e-04

Joint ci ratio: 2.232581e-01	ci left: 8.291783e-04	ci right 1.040350e-03	k: 307	n:330000
Cons ci ratio: 2.430119e-01	ci left: 6.921975e-04	ci right 8.864389e-04	k: 259	n:330000
KS ci ratio: 4.454520e-03	ci left: 6.996320e-01	ci right 7.027584e-01	k: 231395	n:330000
NKX2-3   330000 perm   90 sec   (3662 perm/sec)   p_kst 7.011970e-01   p_cons 7.848485e-04   p_joint 9.303030e-04

Joint ci ratio: 2.211159e-01	ci left: 8.214553e-04	ci right 1.028379e-03	k: 313	n:340000
Cons ci ratio: 2.407095e-01	ci left: 6.856532e-04	ci right 8.759630e-04	k: 264	n:340000
KS ci ratio: 4.388646e-03	ci left: 6.996435e-01	ci right 7.027236e-01	k: 238403	n:340000
NKX2-3   340000 perm   94 sec   (3614 perm/sec)   p_kst 7.011853e-01   p_cons 7.764706e-04   p_joint 9.205882e-04

Joint ci ratio: 2.170073e-01	ci left: 8.303902e-04	ci right 1.035160e-03	k: 325	n:350000
Cons ci ratio: 2.362917e-01	ci left: 6.929276e-04	ci right 8.812105e-04	k: 274	n:350000
KS ci ratio: 4.323575e-03	ci left: 6.998521e-01	ci right 7.028874e-01	k: 245480	n:350000
NKX2-3   350000 perm   98 sec   (3567 perm/sec)   p_kst 7.013714e-01   p_cons 7.828571e-04   p_joint 9.285714e-04

Joint ci ratio: 2.128046e-01	ci left: 8.414921e-04	ci right 1.044457e-03	k: 338	n:360000
Cons ci ratio: 2.317020e-01	ci left: 7.024445e-04	ci right 8.890754e-04	k: 285	n:360000
KS ci ratio: 4.262473e-03	ci left: 6.999354e-01	ci right 7.029280e-01	k: 252516	n:360000
NKX2-3   360000 perm   102 sec   (3522 perm/sec)   p_kst 7.014333e-01   p_cons 7.916667e-04   p_joint 9.388889e-04

Joint ci ratio: 2.091346e-01	ci left: 8.494684e-04	ci right 1.050371e-03	k: 350	n:370000
Cons ci ratio: 2.277539e-01	ci left: 7.089316e-04	ci right 8.936257e-04	k: 295	n:370000
KS ci ratio: 4.206467e-03	ci left: 6.997574e-01	ci right 7.027097e-01	k: 259457	n:370000
NKX2-3   370000 perm   106 sec   (3479 perm/sec)   p_kst 7.012351e-01   p_cons 7.972973e-04   p_joint 9.459459e-04

Joint ci ratio: 2.065040e-01	ci left: 8.495657e-04	ci right 1.047645e-03	k: 359	n:380000
Cons ci ratio: 2.247372e-01	ci left: 7.101351e-04	ci right 8.923529e-04	k: 303	n:380000
KS ci ratio: 4.150707e-03	ci left: 6.997813e-01	ci right 7.026945e-01	k: 266471	n:380000
NKX2-3   380000 perm   111 sec   (3436 perm/sec)   p_kst 7.012395e-01   p_cons 7.973684e-04   p_joint 9.447368e-04

Joint ci ratio: 2.045258e-01	ci left: 8.448068e-04	ci right 1.039654e-03	k: 366	n:390000
Cons ci ratio: 2.225523e-01	ci left: 7.064491e-04	ci right 8.857173e-04	k: 309	n:390000
KS ci ratio: 4.097709e-03	ci left: 6.997427e-01	ci right 7.026184e-01	k: 273461	n:390000
NKX2-3   390000 perm   115 sec   (3398 perm/sec)   p_kst 7.011821e-01   p_cons 7.923077e-04   p_joint 9.384615e-04

Joint ci ratio: 2.026033e-01	ci left: 8.402944e-04	ci right 1.032054e-03	k: 373	n:400000
Cons ci ratio: 2.204298e-01	ci left: 7.029556e-04	ci right 8.794054e-04	k: 315	n:400000
KS ci ratio: 4.046183e-03	ci left: 6.997588e-01	ci right 7.025983e-01	k: 280472	n:400000
NKX2-3   400000 perm   119 sec   (3360 perm/sec)   p_kst 7.011800e-01   p_cons 7.875000e-04   p_joint 9.325000e-04

Joint ci ratio: 1.994286e-01	ci left: 8.475950e-04	ci right 1.037621e-03	k: 385	n:410000
Cons ci ratio: 2.166898e-01	ci left: 7.111714e-04	ci right 8.862517e-04	k: 326	n:410000
KS ci ratio: 3.996065e-03	ci left: 6.998256e-01	ci right 7.026301e-01	k: 287504	n:410000
NKX2-3   410000 perm   123 sec   (3321 perm/sec)   p_kst 7.012293e-01   p_cons 7.951220e-04   p_joint 9.390244e-04

Joint ci ratio: 1.973939e-01	ci left: 8.455154e-04	ci right 1.032908e-03	k: 393	n:420000
Cons ci ratio: 2.144073e-01	ci left: 7.100057e-04	ci right 8.827155e-04	k: 333	n:420000
KS ci ratio: 3.948303e-03	ci left: 6.998322e-01	ci right 7.026031e-01	k: 294512	n:420000
NKX2-3   420000 perm   128 sec   (3286 perm/sec)   p_kst 7.012190e-01   p_cons 7.928571e-04   p_joint 9.357143e-04

Joint ci ratio: 1.937391e-01	ci left: 8.590287e-04	ci right 1.045476e-03	k: 408	n:430000
Cons ci ratio: 2.100488e-01	ci left: 7.243224e-04	ci right 8.964724e-04	k: 347	n:430000
KS ci ratio: 3.901477e-03	ci left: 6.999178e-01	ci right 7.026562e-01	k: 301554	n:430000
NKX2-3   430000 perm   132 sec   (3248 perm/sec)   p_kst 7.012884e-01   p_cons 8.069767e-04   p_joint 9.488372e-04

Joint ci ratio: 1.914131e-01	ci left: 8.611369e-04	ci right 1.045537e-03	k: 418	n:440000
Cons ci ratio: 2.079678e-01	ci left: 7.229369e-04	ci right 8.928387e-04	k: 354	n:440000
KS ci ratio: 3.854939e-03	ci left: 7.001454e-01	ci right 7.028519e-01	k: 308660	n:440000
NKX2-3   440000 perm   137 sec   (3214 perm/sec)   p_kst 7.015000e-01   p_cons 8.045455e-04   p_joint 9.500000e-04

Joint ci ratio: 1.889486e-01	ci left: 8.652814e-04	ci right 1.047909e-03	k: 429	n:450000
Cons ci ratio: 2.048181e-01	ci left: 7.300530e-04	ci right 8.987035e-04	k: 365	n:450000
KS ci ratio: 3.811199e-03	ci left: 7.002340e-01	ci right 7.029100e-01	k: 315708	n:450000
NKX2-3   450000 perm   142 sec   (3178 perm/sec)   p_kst 7.015733e-01   p_cons 8.111111e-04   p_joint 9.533333e-04

Joint ci ratio: 1.861549e-01	ci left: 8.734053e-04	ci right 1.054714e-03	k: 442	n:460000
Cons ci ratio: 2.015400e-01	ci left: 7.389425e-04	ci right 9.065783e-04	k: 377	n:460000
KS ci ratio: 3.769285e-03	ci left: 7.002776e-01	ci right 7.029242e-01	k: 322737	n:460000
NKX2-3   460000 perm   146 sec   (3142 perm/sec)   p_kst 7.016022e-01   p_cons 8.195652e-04   p_joint 9.608696e-04

Joint ci ratio: 1.844968e-01	ci left: 8.710537e-04	ci right 1.050084e-03	k: 450	n:470000
Cons ci ratio: 1.996996e-01	ci left: 7.373657e-04	ci right 9.029303e-04	k: 384	n:470000
KS ci ratio: 3.728858e-03	ci left: 7.003045e-01	ci right 7.029228e-01	k: 329759	n:470000
NKX2-3   470000 perm   151 sec   (3108 perm/sec)   p_kst 7.016149e-01   p_cons 8.170213e-04   p_joint 9.574468e-04

Joint ci ratio: 1.830820e-01	ci left: 8.668190e-04	ci right 1.043461e-03	k: 457	n:480000
Cons ci ratio: 1.981620e-01	ci left: 7.338812e-04	ci right 8.972413e-04	k: 390	n:480000
KS ci ratio: 3.688878e-03	ci left: 7.004243e-01	ci right 7.030149e-01	k: 336826	n:480000
NKX2-3   480000 perm   156 sec   (3075 perm/sec)   p_kst 7.017208e-01   p_cons 8.125000e-04   p_joint 9.520833e-04

Joint ci ratio: 1.807292e-01	ci left: 8.725037e-04	ci right 1.047769e-03	k: 469	n:490000
Cons ci ratio: 1.954314e-01	ci left: 7.402472e-04	ci right 9.024836e-04	k: 401	n:490000
KS ci ratio: 3.650263e-03	ci left: 7.005271e-01	ci right 7.030909e-01	k: 343887	n:490000
NKX2-3   490000 perm   161 sec   (3043 perm/sec)   p_kst 7.018102e-01   p_cons 8.183673e-04   p_joint 9.571429e-04

Joint ci ratio: 1.786504e-01	ci left: 8.760643e-04	ci right 1.049802e-03	k: 480	n:500000
Cons ci ratio: 1.932797e-01	ci left: 7.425665e-04	ci right 9.033086e-04	k: 410	n:500000
KS ci ratio: 3.613128e-03	ci left: 7.005919e-01	ci right 7.031298e-01	k: 350931	n:500000
NKX2-3   500000 perm   166 sec   (3010 perm/sec)   p_kst 7.018620e-01   p_cons 8.200000e-04   p_joint 9.600000e-04

Joint ci ratio: 1.773650e-01	ci left: 8.720003e-04	ci right 1.043554e-03	k: 487	n:510000
Cons ci ratio: 1.918845e-01	ci left: 7.392037e-04	ci right 8.979281e-04	k: 416	n:510000
KS ci ratio: 3.577708e-03	ci left: 7.005836e-01	ci right 7.030965e-01	k: 357939	n:510000
NKX2-3   510000 perm   171 sec   (2979 perm/sec)   p_kst 7.018412e-01   p_cons 8.156863e-04   p_joint 9.549020e-04

Joint ci ratio: 1.761068e-01	ci left: 8.680970e-04	ci right 1.037543e-03	k: 494	n:520000
Cons ci ratio: 1.905192e-01	ci left: 7.359743e-04	ci right 8.927505e-04	k: 422	n:520000
KS ci ratio: 3.542724e-03	ci left: 7.006450e-01	ci right 7.031335e-01	k: 364983	n:520000
NKX2-3   520000 perm   176 sec   (2949 perm/sec)   p_kst 7.018904e-01   p_cons 8.115385e-04   p_joint 9.500000e-04

Joint ci ratio: 1.748751e-01	ci left: 8.643451e-04	ci right 1.031754e-03	k: 501	n:530000
Cons ci ratio: 1.889623e-01	ci left: 7.346681e-04	ci right 8.897404e-04	k: 429	n:530000
KS ci ratio: 3.509125e-03	ci left: 7.006589e-01	ci right 7.031238e-01	k: 372003	n:530000
NKX2-3   530000 perm   182 sec   (2919 perm/sec)   p_kst 7.018925e-01   p_cons 8.094340e-04   p_joint 9.452830e-04

Joint ci ratio: 1.733284e-01	ci left: 8.642791e-04	ci right 1.030039e-03	k: 510	n:540000
Cons ci ratio: 1.872287e-01	ci left: 7.351804e-04	ci right 8.887754e-04	k: 437	n:540000
KS ci ratio: 3.476619e-03	ci left: 7.006539e-01	ci right 7.030958e-01	k: 379013	n:540000
NKX2-3   540000 perm   187 sec   (2890 perm/sec)   p_kst 7.018759e-01   p_cons 8.092593e-04   p_joint 9.444444e-04

Joint ci ratio: 1.714921e-01	ci left: 8.677020e-04	ci right 1.032173e-03	k: 521	n:550000
Cons ci ratio: 1.853341e-01	ci left: 7.374141e-04	ci right 8.897416e-04	k: 446	n:550000
KS ci ratio: 3.445928e-03	ci left: 7.005362e-01	ci right 7.029562e-01	k: 385961	n:550000
NKX2-3   550000 perm   192 sec   (2861 perm/sec)   p_kst 7.017473e-01   p_cons 8.109091e-04   p_joint 9.472727e-04

Joint ci ratio: 1.701932e-01	ci left: 8.658821e-04	ci right 1.028638e-03	k: 529	n:560000
Cons ci ratio: 1.839000e-01	ci left: 7.361683e-04	ci right 8.869304e-04	k: 453	n:560000
KS ci ratio: 3.414213e-03	ci left: 7.006464e-01	ci right 7.030444e-01	k: 393034	n:560000
NKX2-3   560000 perm   198 sec   (2833 perm/sec)   p_kst 7.018464e-01   p_cons 8.089286e-04   p_joint 9.446429e-04

Joint ci ratio: 1.682982e-01	ci left: 8.708523e-04	ci right 1.032535e-03	k: 541	n:570000
Cons ci ratio: 1.819072e-01	ci left: 7.399938e-04	ci right 8.897163e-04	k: 463	n:570000
KS ci ratio: 3.384975e-03	ci left: 7.005525e-01	ci right 7.029296e-01	k: 399993	n:570000
NKX2-3   570000 perm   203 sec   (2805 perm/sec)   p_kst 7.017421e-01   p_cons 8.122807e-04   p_joint 9.491228e-04

Joint ci ratio: 1.675279e-01	ci left: 8.640958e-04	ci right 1.023715e-03	k: 546	n:580000
Cons ci ratio: 1.809354e-01	ci left: 7.354644e-04	ci right 8.833883e-04	k: 468	n:580000
KS ci ratio: 3.354844e-03	ci left: 7.006657e-01	ci right 7.030219e-01	k: 407070	n:580000
NKX2-3   580000 perm   209 sec   (2778 perm/sec)   p_kst 7.018448e-01   p_cons 8.068966e-04   p_joint 9.413793e-04

Joint ci ratio: 1.658682e-01	ci left: 8.673165e-04	ci right 1.025785e-03	k: 557	n:590000
Cons ci ratio: 1.794117e-01	ci left: 7.359467e-04	ci right 8.825858e-04	k: 476	n:590000
KS ci ratio: 3.326917e-03	ci left: 7.005969e-01	ci right 7.029333e-01	k: 414042	n:590000
NKX2-3   590000 perm   214 sec   (2751 perm/sec)   p_kst 7.017661e-01   p_cons 8.067797e-04   p_joint 9.440678e-04

Joint ci ratio: 1.644015e-01	ci left: 8.688391e-04	ci right 1.026044e-03	k: 567	n:600000
Cons ci ratio: 1.777426e-01	ci left: 7.380105e-04	ci right 8.835458e-04	k: 485	n:600000
KS ci ratio: 3.298008e-03	ci left: 7.007424e-01	ci right 7.030589e-01	k: 421141	n:600000
NKX2-3   600000 perm   220 sec   (2726 perm/sec)   p_kst 7.019017e-01   p_cons 8.083333e-04   p_joint 9.450000e-04

Joint ci ratio: 1.629731e-01	ci left: 8.703178e-04	ci right 1.026288e-03	k: 577	n:610000
Cons ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
KS ci ratio: 3.270556e-03	ci left: 7.007914e-01	ci right 7.030887e-01	k: 428184	n:610000
NKX2-3   610000 perm   226 sec   (2700 perm/sec)   p_kst 7.019410e-01   p_cons 8.049180e-04   p_joint 9.459016e-04

Joint ci ratio: 1.619954e-01	ci left: 8.671116e-04	ci right 1.021484e-03	k: 584	n:620000
Cons ci ratio: 1.757654e-01	ci left: 7.311605e-04	ci right 8.735707e-04	k: 496	n:620000
KS ci ratio: 3.244254e-03	ci left: 7.007774e-01	ci right 7.030562e-01	k: 435189	n:620000
NKX2-3   620000 perm   232 sec   (2675 perm/sec)   p_kst 7.019177e-01   p_cons 8.000000e-04   p_joint 9.419355e-04

Joint ci ratio: 1.608992e-01	ci left: 8.655332e-04	ci right 1.018481e-03	k: 592	n:630000
Cons ci ratio: 1.750629e-01	ci left: 7.256250e-04	ci right 8.663324e-04	k: 500	n:630000
KS ci ratio: 3.218588e-03	ci left: 7.007624e-01	ci right 7.030230e-01	k: 442193	n:630000
NKX2-3   630000 perm   238 sec   (2652 perm/sec)   p_kst 7.018937e-01   p_cons 7.936508e-04   p_joint 9.396825e-04

Joint ci ratio: 1.591636e-01	ci left: 8.715085e-04	ci right 1.023692e-03	k: 605	n:640000
Cons ci ratio: 1.733412e-01	ci left: 7.292310e-04	ci right 8.691014e-04	k: 510	n:640000
KS ci ratio: 3.193260e-03	ci left: 7.007823e-01	ci right 7.030252e-01	k: 449219	n:640000
NKX2-3   640000 perm   244 sec   (2627 perm/sec)   p_kst 7.019047e-01   p_cons 7.968750e-04   p_joint 9.453125e-04

Joint ci ratio: 1.573558e-01	ci left: 8.787864e-04	ci right 1.030333e-03	k: 619	n:650000
Cons ci ratio: 1.713405e-01	ci left: 7.356775e-04	ci right 8.749874e-04	k: 522	n:650000
KS ci ratio: 3.168823e-03	ci left: 7.007617e-01	ci right 7.029873e-01	k: 456219	n:650000
NKX2-3   650000 perm   250 sec   (2603 perm/sec)   p_kst 7.018754e-01   p_cons 8.030769e-04   p_joint 9.523077e-04

Joint ci ratio: 1.562260e-01	ci left: 8.785728e-04	ci right 1.028893e-03	k: 628	n:660000
Cons ci ratio: 1.702054e-01	ci left: 7.346836e-04	ci right 8.727891e-04	k: 529	n:660000
KS ci ratio: 3.144187e-03	ci left: 7.008418e-01	ci right 7.030503e-01	k: 463285	n:660000
NKX2-3   660000 perm   256 sec   (2579 perm/sec)   p_kst 7.019470e-01   p_cons 8.015152e-04   p_joint 9.515152e-04

Joint ci ratio: 1.556093e-01	ci left: 8.726311e-04	ci right 1.021291e-03	k: 633	n:670000
Cons ci ratio: 1.695672e-01	ci left: 7.294343e-04	ci right 8.659863e-04	k: 533	n:670000
KS ci ratio: 3.120273e-03	ci left: 7.008987e-01	ci right 7.030906e-01	k: 470337	n:670000
NKX2-3   670000 perm   262 sec   (2556 perm/sec)   p_kst 7.019955e-01   p_cons 7.955224e-04   p_joint 9.447761e-04

Joint ci ratio: 1.548786e-01	ci left: 8.682789e-04	ci right 1.015438e-03	k: 639	n:680000
Cons ci ratio: 1.689362e-01	ci left: 7.243403e-04	ci right 8.593827e-04	k: 537	n:680000
KS ci ratio: 3.097244e-03	ci left: 7.009069e-01	ci right 7.030826e-01	k: 477357	n:680000
NKX2-3   680000 perm   268 sec   (2533 perm/sec)   p_kst 7.019956e-01   p_cons 7.897059e-04   p_joint 9.397059e-04

Joint ci ratio: 1.542776e-01	ci left: 8.626611e-04	ci right 1.008248e-03	k: 644	n:690000
Cons ci ratio: 1.684678e-01	ci left: 7.180067e-04	ci right 8.514594e-04	k: 540	n:690000
KS ci ratio: 3.073962e-03	ci left: 7.010179e-01	ci right 7.031775e-01	k: 484448	n:690000
NKX2-3   690000 perm   275 sec   (2511 perm/sec)   p_kst 7.020986e-01   p_cons 7.826087e-04   p_joint 9.333333e-04

Joint ci ratio: 1.527456e-01	ci left: 8.681956e-04	ci right 1.013128e-03	k: 657	n:700000
Cons ci ratio: 1.672358e-01	ci left: 7.186980e-04	ci right 8.512039e-04	k: 548	n:700000
KS ci ratio: 3.052145e-03	ci left: 7.009956e-01	ci right 7.031398e-01	k: 491448	n:700000
NKX2-3   700000 perm   281 sec   (2488 perm/sec)   p_kst 7.020686e-01   p_cons 7.828571e-04   p_joint 9.385714e-04

Joint ci ratio: 1.511456e-01	ci left: 8.749363e-04	ci right 1.019326e-03	k: 671	n:710000
Cons ci ratio: 1.651427e-01	ci left: 7.274740e-04	ci right 8.597525e-04	k: 562	n:710000
KS ci ratio: 3.030500e-03	ci left: 7.010135e-01	ci right 7.031426e-01	k: 498476	n:710000
NKX2-3   710000 perm   288 sec   (2467 perm/sec)   p_kst 7.020789e-01   p_cons 7.915493e-04   p_joint 9.450704e-04

Joint ci ratio: 1.497041e-01	ci left: 8.801606e-04	ci right 1.023903e-03	k: 684	n:720000
Cons ci ratio: 1.636951e-01	ci left: 7.306877e-04	ci right 8.622712e-04	k: 572	n:720000
KS ci ratio: 3.009959e-03	ci left: 7.009406e-01	ci right 7.030550e-01	k: 505439	n:720000
NKX2-3   720000 perm   294 sec   (2445 perm/sec)   p_kst 7.019986e-01   p_cons 7.944444e-04   p_joint 9.500000e-04

Joint ci ratio: 1.485163e-01	ci left: 8.826100e-04	ci right 1.025507e-03	k: 695	n:730000
Cons ci ratio: 1.627044e-01	ci left: 7.298756e-04	ci right 8.604396e-04	k: 579	n:730000
KS ci ratio: 2.989575e-03	ci left: 7.009054e-01	ci right 7.030053e-01	k: 512428	n:730000
NKX2-3   730000 perm   301 sec   (2424 perm/sec)   p_kst 7.019562e-01   p_cons 7.931507e-04   p_joint 9.520548e-04

Joint ci ratio: 1.472520e-01	ci left: 8.862991e-04	ci right 1.028465e-03	k: 707	n:740000
Cons ci ratio: 1.611827e-01	ci left: 7.342750e-04	ci right 8.642787e-04	k: 590	n:740000
KS ci ratio: 2.969580e-03	ci left: 7.008739e-01	ci right 7.029596e-01	k: 519419	n:740000
NKX2-3   740000 perm   308 sec   (2404 perm/sec)   p_kst 7.019176e-01   p_cons 7.972973e-04   p_joint 9.554054e-04

Joint ci ratio: 1.462230e-01	ci left: 8.873256e-04	ci right 1.028575e-03	k: 717	n:750000
Cons ci ratio: 1.599692e-01	ci left: 7.360025e-04	ci right 8.652367e-04	k: 599	n:750000
KS ci ratio: 2.949784e-03	ci left: 7.008713e-01	ci right 7.029431e-01	k: 526431	n:750000
NKX2-3   750000 perm   315 sec   (2383 perm/sec)   p_kst 7.019080e-01   p_cons 7.986667e-04   p_joint 9.560000e-04

Joint ci ratio: 1.448175e-01	ci left: 8.934009e-04	ci right 1.034132e-03	k: 731	n:760000
Cons ci ratio: 1.583927e-01	ci left: 7.414790e-04	ci right 8.702697e-04	k: 611	n:760000
KS ci ratio: 2.930719e-03	ci left: 7.008201e-01	ci right 7.028783e-01	k: 533406	n:760000
NKX2-3   760000 perm   321 sec   (2365 perm/sec)   p_kst 7.018500e-01   p_cons 8.039474e-04   p_joint 9.618421e-04

Joint ci ratio: 1.434518e-01	ci left: 8.993246e-04	ci right 1.039538e-03	k: 745	n:770000
Cons ci ratio: 1.567362e-01	ci left: 7.480670e-04	ci right 8.765155e-04	k: 624	n:770000
KS ci ratio: 2.911920e-03	ci left: 7.007846e-01	ci right 7.028295e-01	k: 540392	n:770000
NKX2-3   770000 perm   328 sec   (2345 perm/sec)   p_kst 7.018078e-01   p_cons 8.103896e-04   p_joint 9.675325e-04

Joint ci ratio: 1.428787e-01	ci left: 8.952114e-04	ci right 1.034179e-03	k: 751	n:780000
Cons ci ratio: 1.561134e-01	ci left: 7.446357e-04	ci right 8.719392e-04	k: 629	n:780000
KS ci ratio: 2.892822e-03	ci left: 7.008450e-01	ci right 7.028766e-01	k: 547452	n:780000
NKX2-3   780000 perm   335 sec   (2326 perm/sec)   p_kst 7.018615e-01   p_cons 8.064103e-04   p_joint 9.628205e-04

Joint ci ratio: 1.421248e-01	ci left: 8.936451e-04	ci right 1.031575e-03	k: 759	n:790000
Cons ci ratio: 1.552533e-01	ci left: 7.437255e-04	ci right 8.701077e-04	k: 636	n:790000
KS ci ratio: 2.874234e-03	ci left: 7.008836e-01	ci right 7.029022e-01	k: 554496	n:790000
NKX2-3   790000 perm   342 sec   (2307 perm/sec)   p_kst 7.018937e-01   p_cons 8.050633e-04   p_joint 9.607595e-04

Joint ci ratio: 1.414750e-01	ci left: 8.909140e-04	ci right 1.027741e-03	k: 766	n:800000
Cons ci ratio: 1.545275e-01	ci left: 7.416381e-04	ci right 8.670219e-04	k: 642	n:800000
KS ci ratio: 2.856196e-03	ci left: 7.008925e-01	ci right 7.028985e-01	k: 561517	n:800000
NKX2-3   800000 perm   350 sec   (2288 perm/sec)   p_kst 7.018962e-01   p_cons 8.025000e-04   p_joint 9.575000e-04

Joint ci ratio: 1.347019e-01	ci left: 9.740813e-04	ci right 1.115946e-03	k: 845	n:810000
Cons ci ratio: 1.534572e-01	ci left: 7.431651e-04	ci right 8.678568e-04	k: 651	n:810000
KS ci ratio: 2.838167e-03	ci left: 7.009495e-01	ci right 7.029429e-01	k: 568577	n:810000
NKX2-3   810000 perm   357 sec   (2270 perm/sec)   p_kst 7.019469e-01   p_cons 8.037037e-04   p_joint 1.043210e-03

Joint ci ratio: 1.390481e-01	ci left: 9.009562e-04	ci right 1.036755e-03	k: 793	n:820000
Cons ci ratio: 1.519493e-01	ci left: 7.493502e-04	ci right 8.737320e-04	k: 664	n:820000
KS ci ratio: 2.820212e-03	ci left: 7.010441e-01	ci right 7.030252e-01	k: 575669	n:820000
NKX2-3   820000 perm   364 sec   (2252 perm/sec)   p_kst 7.020354e-01   p_cons 8.097561e-04   p_joint 9.670732e-04

Joint ci ratio: 1.381807e-01	ci left: 9.017317e-04	ci right 1.036730e-03	k: 803	n:830000
Cons ci ratio: 1.509313e-01	ci left: 7.507544e-04	ci right 8.744590e-04	k: 673	n:830000
KS ci ratio: 2.803222e-03	ci left: 7.010425e-01	ci right 7.030116e-01	k: 582683	n:830000
NKX2-3   830000 perm   372 sec   (2234 perm/sec)   p_kst 7.020277e-01   p_cons 8.108434e-04   p_joint 9.674699e-04

Joint ci ratio: 1.376683e-01	ci left: 8.978930e-04	ci right 1.031777e-03	k: 809	n:840000
Cons ci ratio: 1.504858e-01	ci left: 7.463991e-04	ci right 8.689903e-04	k: 677	n:840000
KS ci ratio: 2.786243e-03	ci left: 7.010850e-01	ci right 7.030422e-01	k: 589734	n:840000
NKX2-3   840000 perm   379 sec   (2216 perm/sec)   p_kst 7.020643e-01   p_cons 8.059524e-04   p_joint 9.630952e-04

Joint ci ratio: 1.366595e-01	ci left: 9.009629e-04	ci right 1.034240e-03	k: 821	n:850000
Cons ci ratio: 1.492795e-01	ci left: 7.500739e-04	ci right 8.721929e-04	k: 688	n:850000
KS ci ratio: 2.769374e-03	ci left: 7.011559e-01	ci right 7.031015e-01	k: 596810	n:850000
NKX2-3   850000 perm   387 sec   (2199 perm/sec)   p_kst 7.021294e-01   p_cons 8.094118e-04   p_joint 9.658824e-04

Joint ci ratio: 1.359175e-01	ci left: 9.005949e-04	ci right 1.033036e-03	k: 830	n:860000
Cons ci ratio: 1.484203e-01	ci left: 7.503080e-04	ci right 8.716996e-04	k: 696	n:860000
KS ci ratio: 2.753412e-03	ci left: 7.011333e-01	ci right 7.030676e-01	k: 603807	n:860000
NKX2-3   860000 perm   394 sec   (2183 perm/sec)   p_kst 7.021012e-01   p_cons 8.093023e-04   p_joint 9.651163e-04

Joint ci ratio: 1.353488e-01	ci left: 8.980161e-04	ci right 1.029481e-03	k: 837	n:870000
Cons ci ratio: 1.477858e-01	ci left: 7.483247e-04	ci right 8.688321e-04	k: 702	n:870000
KS ci ratio: 2.737421e-03	ci left: 7.011573e-01	ci right 7.030804e-01	k: 610844	n:870000
NKX2-3   870000 perm   402 sec   (2166 perm/sec)   p_kst 7.021195e-01   p_cons 8.068966e-04   p_joint 9.620690e-04

Joint ci ratio: 1.343899e-01	ci left: 9.009877e-04	ci right 1.031878e-03	k: 849	n:880000
Cons ci ratio: 1.467456e-01	ci left: 7.507660e-04	ci right 8.707410e-04	k: 712	n:880000
KS ci ratio: 2.721847e-03	ci left: 7.011592e-01	ci right 7.030713e-01	k: 617862	n:880000
NKX2-3   880000 perm   409 sec   (2150 perm/sec)   p_kst 7.021159e-01   p_cons 8.090909e-04   p_joint 9.647727e-04

Joint ci ratio: 1.336840e-01	ci left: 9.006375e-04	ci right 1.030735e-03	k: 858	n:890000
Cons ci ratio: 1.459292e-01	ci left: 7.509900e-04	ci right 8.702750e-04	k: 720	n:890000
KS ci ratio: 2.705729e-03	ci left: 7.012858e-01	ci right 7.031870e-01	k: 624991	n:890000
NKX2-3   890000 perm   417 sec   (2133 perm/sec)   p_kst 7.022371e-01   p_cons 8.089888e-04   p_joint 9.640449e-04

Joint ci ratio: 1.331428e-01	ci left: 8.981485e-04	ci right 1.027320e-03	k: 865	n:900000
Cons ci ratio: 1.454261e-01	ci left: 7.479987e-04	ci right 8.663633e-04	k: 725	n:900000
KS ci ratio: 2.690622e-03	ci left: 7.012963e-01	ci right 7.031868e-01	k: 632018	n:900000
NKX2-3   900000 perm   425 sec   (2118 perm/sec)   p_kst 7.022422e-01   p_cons 8.055556e-04   p_joint 9.611111e-04

Joint ci ratio: 1.322297e-01	ci left: 9.010279e-04	ci right 1.029655e-03	k: 877	n:910000
Cons ci ratio: 1.444346e-01	ci left: 7.503695e-04	ci right 8.682300e-04	k: 735	n:910000
KS ci ratio: 2.675449e-03	ci left: 7.013560e-01	ci right 7.032361e-01	k: 639090	n:910000
NKX2-3   910000 perm   433 sec   (2103 perm/sec)   p_kst 7.022967e-01   p_cons 8.076923e-04   p_joint 9.637363e-04

Joint ci ratio: 1.313351e-01	ci left: 9.038477e-04	ci right 1.031936e-03	k: 889	n:920000
Cons ci ratio: 1.434631e-01	ci left: 7.526915e-04	ci right 8.700534e-04	k: 745	n:920000
KS ci ratio: 2.660778e-03	ci left: 7.013754e-01	ci right 7.032451e-01	k: 646126	n:920000
NKX2-3   920000 perm   440 sec   (2089 perm/sec)   p_kst 7.023109e-01   p_cons 8.097826e-04   p_joint 9.663043e-04

Joint ci ratio: 1.306034e-01	ci left: 9.045293e-04	ci right 1.031945e-03	k: 899	n:930000
Cons ci ratio: 1.425110e-01	ci left: 7.549661e-04	ci right 8.718350e-04	k: 755	n:930000
KS ci ratio: 2.646054e-03	ci left: 7.014406e-01	ci right 7.033001e-01	k: 653205	n:930000
NKX2-3   930000 perm   449 sec   (2073 perm/sec)   p_kst 7.023710e-01   p_cons 8.118280e-04   p_joint 9.666667e-04

Joint ci ratio: 1.298124e-01	ci left: 9.062277e-04	ci right 1.033050e-03	k: 910	n:940000
Cons ci ratio: 1.417629e-01	ci left: 7.551425e-04	ci right 8.713733e-04	k: 763	n:940000
KS ci ratio: 2.631478e-03	ci left: 7.015193e-01	ci right 7.033688e-01	k: 660298	n:940000
NKX2-3   940000 perm   457 sec   (2058 perm/sec)   p_kst 7.024447e-01   p_cons 8.117021e-04   p_joint 9.680851e-04

Joint ci ratio: 1.292462e-01	ci left: 9.048366e-04	ci right 1.030870e-03	k: 918	n:950000
Cons ci ratio: 1.410265e-01	ci left: 7.553168e-04	ci right 8.709197e-04	k: 771	n:950000
KS ci ratio: 2.617508e-03	ci left: 7.015374e-01	ci right 7.033771e-01	k: 667335	n:950000
NKX2-3   950000 perm   465 sec   (2043 perm/sec)   p_kst 7.024579e-01   p_cons 8.115789e-04   p_joint 9.663158e-04

Joint ci ratio: 1.287570e-01	ci left: 9.024675e-04	ci right 1.027658e-03	k: 925	n:960000
Cons ci ratio: 1.404818e-01	ci left: 7.534788e-04	ci right 8.683176e-04	k: 777	n:960000
KS ci ratio: 2.604110e-03	ci left: 7.014989e-01	ci right 7.033291e-01	k: 674318	n:960000
NKX2-3   960000 perm   473 sec   (2028 perm/sec)   p_kst 7.024146e-01   p_cons 8.093750e-04   p_joint 9.635417e-04

Joint ci ratio: 1.279989e-01	ci left: 9.041398e-04	ci right 1.028768e-03	k: 936	n:970000
Cons ci ratio: 1.395874e-01	ci left: 7.556591e-04	ci right 8.700361e-04	k: 787	n:970000
KS ci ratio: 2.590851e-03	ci left: 7.014715e-01	ci right 7.032923e-01	k: 681311	n:970000
NKX2-3   970000 perm   482 sec   (2013 perm/sec)   p_kst 7.023825e-01   p_cons 8.113402e-04   p_joint 9.649485e-04

Joint ci ratio: 1.275913e-01	ci left: 9.008405e-04	ci right 1.024589e-03	k: 942	n:980000
Cons ci ratio: 1.390592e-01	ci left: 7.538573e-04	ci right 8.674939e-04	k: 793	n:980000
KS ci ratio: 2.577855e-03	ci left: 7.014345e-01	ci right 7.032460e-01	k: 688294	n:980000
NKX2-3   980000 perm   490 sec   (1999 perm/sec)   p_kst 7.023408e-01   p_cons 8.091837e-04   p_joint 9.612245e-04

Joint ci ratio: 1.267206e-01	ci left: 9.044548e-04	ci right 1.027788e-03	k: 955	n:990000
Cons ci ratio: 1.380198e-01	ci left: 7.579438e-04	ci right 8.712723e-04	k: 805	n:990000
KS ci ratio: 2.564693e-03	ci left: 7.014568e-01	ci right 7.032591e-01	k: 695335	n:990000
NKX2-3   990000 perm   498 sec   (1986 perm/sec)   p_kst 7.023586e-01   p_cons 8.131313e-04   p_joint 9.646465e-04

Joint ci ratio: 1.259325e-01	ci left: 9.070311e-04	ci right 1.029889e-03	k: 967	n:1000000
Cons ci ratio: 1.370873e-01	ci left: 7.609859e-04	ci right 8.739378e-04	k: 816	n:1000000
KS ci ratio: 2.551811e-03	ci left: 7.014658e-01	ci right 7.032590e-01	k: 702363	n:1000000
NKX2-3   1000000 perm   507 sec   (1973 perm/sec)   p_kst 7.023630e-01   p_cons 8.160000e-04   p_joint 9.670000e-04

Joint ci ratio: 1.252870e-01	ci left: 9.076405e-04	ci right 1.029904e-03	k: 977	n:1010000
Cons ci ratio: 1.364211e-01	ci left: 7.611012e-04	ci right 8.734766e-04	k: 824	n:1010000
KS ci ratio: 2.539000e-03	ci left: 7.014944e-01	ci right 7.032787e-01	k: 709411	n:1010000
NKX2-3   1010000 perm   515 sec   (1959 perm/sec)   p_kst 7.023871e-01   p_cons 8.158416e-04   p_joint 9.673267e-04

Joint ci ratio: 1.245252e-01	ci left: 9.101393e-04	ci right 1.031939e-03	k: 989	n:1020000
Cons ci ratio: 1.357644e-01	ci left: 7.612155e-04	ci right 8.730231e-04	k: 832	n:1020000
KS ci ratio: 2.526606e-03	ci left: 7.014852e-01	ci right 7.032607e-01	k: 716421	n:1020000
NKX2-3   1020000 perm   524 sec   (1946 perm/sec)   p_kst 7.023735e-01   p_cons 8.156863e-04   p_joint 9.696078e-04

Joint ci ratio: 1.238391e-01	ci left: 9.116509e-04	ci right 1.032931e-03	k: 1000	n:1030000
Cons ci ratio: 1.350368e-01	ci left: 7.622670e-04	ci right 8.735808e-04	k: 841	n:1030000
KS ci ratio: 2.514000e-03	ci left: 7.015413e-01	ci right 7.033081e-01	k: 723498	n:1030000
NKX2-3   1030000 perm   533 sec   (1933 perm/sec)   p_kst 7.024252e-01   p_cons 8.165049e-04   p_joint 9.708738e-04

Joint ci ratio: 1.233473e-01	ci left: 9.103394e-04	ci right 1.030929e-03	k: 1008	n:1040000
Cons ci ratio: 1.346379e-01	ci left: 7.595829e-04	ci right 8.701508e-04	k: 846	n:1040000
KS ci ratio: 2.501690e-03	ci left: 7.015780e-01	ci right 7.033363e-01	k: 730556	n:1040000
NKX2-3   1040000 perm   542 sec   (1920 perm/sec)   p_kst 7.024577e-01   p_cons 8.134615e-04   p_joint 9.692308e-04

Joint ci ratio: 1.225601e-01	ci left: 9.136698e-04	ci right 1.033872e-03	k: 1021	n:1050000
Cons ci ratio: 1.338499e-01	ci left: 7.615528e-04	ci right 8.717071e-04	k: 856	n:1050000
KS ci ratio: 2.489604e-03	ci left: 7.016064e-01	ci right 7.033563e-01	k: 737606	n:1050000
NKX2-3   1050000 perm   551 sec   (1907 perm/sec)   p_kst 7.024819e-01   p_cons 8.152381e-04   p_joint 9.723810e-04

Joint ci ratio: 1.220240e-01	ci left: 9.132811e-04	ci right 1.032869e-03	k: 1030	n:1060000
Cons ci ratio: 1.332295e-01	ci left: 7.616634e-04	ci right 8.712826e-04	k: 864	n:1060000
KS ci ratio: 2.477530e-03	ci left: 7.016617e-01	ci right 7.034032e-01	k: 744685	n:1060000
NKX2-3   1060000 perm   560 sec   (1894 perm/sec)   p_kst 7.025330e-01   p_cons 8.150943e-04   p_joint 9.716981e-04

Joint ci ratio: 1.209721e-01	ci left: 9.210571e-04	ci right 1.040549e-03	k: 1048	n:1070000
Cons ci ratio: 1.320888e-01	ci left: 7.680987e-04	ci right 8.776232e-04	k: 879	n:1070000
KS ci ratio: 2.465900e-03	ci left: 7.016702e-01	ci right 7.034035e-01	k: 751715	n:1070000
NKX2-3   1070000 perm   569 sec   (1881 perm/sec)   p_kst 7.025374e-01   p_cons 8.214953e-04   p_joint 9.794393e-04

Joint ci ratio: 1.202292e-01	ci left: 9.242028e-04	ci right 1.043314e-03	k: 1061	n:1080000
Cons ci ratio: 1.312707e-01	ci left: 7.708364e-04	ci right 8.800175e-04	k: 890	n:1080000
KS ci ratio: 2.454862e-03	ci left: 7.016053e-01	ci right 7.033307e-01	k: 758666	n:1080000
NKX2-3   1080000 perm   578 sec   (1869 perm/sec)   p_kst 7.024685e-01   p_cons 8.240741e-04   p_joint 9.824074e-04

Joint ci ratio: 1.197790e-01	ci left: 9.228430e-04	ci right 1.041302e-03	k: 1069	n:1090000
Cons ci ratio: 1.307581e-01	ci left: 7.699760e-04	ci right 8.785764e-04	k: 897	n:1090000
KS ci ratio: 2.443482e-03	ci left: 7.016252e-01	ci right 7.033426e-01	k: 765708	n:1090000
NKX2-3   1090000 perm   587 sec   (1857 perm/sec)   p_kst 7.024844e-01   p_cons 8.229358e-04   p_joint 9.807339e-04

Joint ci ratio: 1.190578e-01	ci left: 9.259188e-04	ci right 1.044007e-03	k: 1082	n:1100000
Cons ci ratio: 1.298929e-01	ci left: 7.735297e-04	ci right 8.818538e-04	k: 909	n:1100000
KS ci ratio: 2.432201e-03	ci left: 7.016547e-01	ci right 7.033642e-01	k: 772761	n:1100000
NKX2-3   1100000 perm   596 sec   (1845 perm/sec)   p_kst 7.025100e-01   p_cons 8.263636e-04   p_joint 9.836364e-04

Joint ci ratio: 1.185662e-01	ci left: 9.254443e-04	ci right 1.042950e-03	k: 1091	n:1110000
Cons ci ratio: 1.294669e-01	ci left: 7.717910e-04	ci right 8.794898e-04	k: 915	n:1110000
KS ci ratio: 2.420725e-03	ci left: 7.017441e-01	ci right 7.034458e-01	k: 779881	n:1110000
NKX2-3   1110000 perm   606 sec   (1832 perm/sec)   p_kst 7.025955e-01   p_cons 8.243243e-04   p_joint 9.828829e-04

Joint ci ratio: 1.178132e-01	ci left: 9.293120e-04	ci right 1.046508e-03	k: 1105	n:1120000
Cons ci ratio: 1.285576e-01	ci left: 7.761327e-04	ci right 8.836187e-04	k: 928	n:1120000
KS ci ratio: 2.409868e-03	ci left: 7.017525e-01	ci right 7.034465e-01	k: 786912	n:1120000
NKX2-3   1120000 perm   615 sec   (1820 perm/sec)   p_kst 7.026000e-01   p_cons 8.285714e-04   p_joint 9.866071e-04

Joint ci ratio: 1.171266e-01	ci left: 9.322545e-04	ci right 1.049089e-03	k: 1118	n:1130000
Cons ci ratio: 1.278711e-01	ci left: 7.778300e-04	ci right 8.849322e-04	k: 938	n:1130000
KS ci ratio: 2.399135e-03	ci left: 7.017642e-01	ci right 7.034507e-01	k: 793947	n:1130000
NKX2-3   1130000 perm   625 sec   (1809 perm/sec)   p_kst 7.026080e-01   p_cons 8.300885e-04   p_joint 9.893805e-04

Joint ci ratio: 1.167103e-01	ci left: 9.308891e-04	ci right 1.047109e-03	k: 1126	n:1140000
Cons ci ratio: 1.273299e-01	ci left: 7.778005e-04	ci right 8.844111e-04	k: 946	n:1140000
KS ci ratio: 2.388741e-03	ci left: 7.017415e-01	ci right 7.034206e-01	k: 800943	n:1140000
NKX2-3   1140000 perm   635 sec   (1796 perm/sec)   p_kst 7.025816e-01   p_cons 8.298246e-04   p_joint 9.877193e-04

Joint ci ratio: 1.162983e-01	ci left: 9.295481e-04	ci right 1.045163e-03	k: 1134	n:1150000
Cons ci ratio: 1.268620e-01	ci left: 7.769304e-04	ci right 8.830010e-04	k: 953	n:1150000
KS ci ratio: 2.378010e-03	ci left: 7.018019e-01	ci right 7.034736e-01	k: 808034	n:1150000
NKX2-3   1150000 perm   644 sec   (1785 perm/sec)   p_kst 7.026383e-01   p_cons 8.286957e-04   p_joint 9.860870e-04

Joint ci ratio: 1.155371e-01	ci left: 9.340910e-04	ci right 1.049458e-03	k: 1149	n:1160000
Cons ci ratio: 1.259409e-01	ci left: 7.819202e-04	ci right 8.878391e-04	k: 967	n:1160000
KS ci ratio: 2.367578e-03	ci left: 7.018336e-01	ci right 7.034981e-01	k: 815093	n:1160000
NKX2-3   1160000 perm   654 sec   (1773 perm/sec)   p_kst 7.026664e-01   p_cons 8.336207e-04   p_joint 9.905172e-04

Joint ci ratio: 1.149884e-01	ci left: 9.352380e-04	ci right 1.050161e-03	k: 1160	n:1170000
Cons ci ratio: 1.253595e-01	ci left: 7.826877e-04	ci right 8.881847e-04	k: 976	n:1170000
KS ci ratio: 2.357659e-03	ci left: 7.017982e-01	ci right 7.034555e-01	k: 822074	n:1170000
NKX2-3   1170000 perm   664 sec   (1762 perm/sec)   p_kst 7.026274e-01   p_cons 8.341880e-04   p_joint 9.914530e-04

Joint ci ratio: 1.141069e-01	ci left: 9.421297e-04	ci right 1.056952e-03	k: 1178	n:1180000
Cons ci ratio: 1.243450e-01	ci left: 7.891907e-04	ci right 8.946401e-04	k: 992	n:1180000
KS ci ratio: 2.347739e-03	ci left: 7.017853e-01	ci right 7.034357e-01	k: 829081	n:1180000
NKX2-3   1180000 perm   674 sec   (1751 perm/sec)   p_kst 7.026110e-01   p_cons 8.406780e-04   p_joint 9.983051e-04

Joint ci ratio: 1.134828e-01	ci left: 9.448261e-04	ci right 1.059306e-03	k: 1191	n:1190000
Cons ci ratio: 1.237235e-01	ci left: 7.907015e-04	ci right 8.957860e-04	k: 1002	n:1190000
KS ci ratio: 2.337492e-03	ci left: 7.018535e-01	ci right 7.034968e-01	k: 836184	n:1190000
NKX2-3   1190000 perm   684 sec   (1740 perm/sec)   p_kst 7.026756e-01   p_cons 8.420168e-04   p_joint 1.000840e-03

Joint ci ratio: 1.130098e-01	ci left: 9.450498e-04	ci right 1.059047e-03	k: 1201	n:1200000
Cons ci ratio: 1.233553e-01	ci left: 7.889578e-04	ci right 8.934756e-04	k: 1008	n:1200000
KS ci ratio: 2.327453e-03	ci left: 7.019072e-01	ci right 7.035435e-01	k: 843271	n:1200000
NKX2-3   1200000 perm   693 sec   (1731 perm/sec)   p_kst 7.027258e-01   p_cons 8.400000e-04   p_joint 1.000833e-03

Joint ci ratio: 1.124034e-01	ci left: 9.476805e-04	ci right 1.061341e-03	k: 1214	n:1210000
Cons ci ratio: 1.226280e-01	ci left: 7.920498e-04	ci right 8.963138e-04	k: 1020	n:1210000
KS ci ratio: 2.317752e-03	ci left: 7.019219e-01	ci right 7.035515e-01	k: 850312	n:1210000
NKX2-3   1210000 perm   703 sec   (1721 perm/sec)   p_kst 7.027372e-01   p_cons 8.429752e-04   p_joint 1.003306e-03

Joint ci ratio: 1.119895e-01	ci left: 9.470827e-04	ci right 1.060226e-03	k: 1223	n:1220000
Cons ci ratio: 1.223290e-01	ci left: 7.895303e-04	ci right 8.931909e-04	k: 1025	n:1220000
KS ci ratio: 2.308312e-03	ci left: 7.019110e-01	ci right 7.035339e-01	k: 857322	n:1220000
NKX2-3   1220000 perm   713 sec   (1710 perm/sec)   p_kst 7.027230e-01   p_cons 8.401639e-04   p_joint 1.002459e-03

Joint ci ratio: 1.116254e-01	ci left: 9.457049e-04	ci right 1.058292e-03	k: 1231	n:1230000
Cons ci ratio: 1.219139e-01	ci left: 7.886286e-04	ci right 8.917940e-04	k: 1032	n:1230000
KS ci ratio: 2.298830e-03	ci left: 7.019288e-01	ci right 7.035450e-01	k: 864367	n:1230000
NKX2-3   1230000 perm   724 sec   (1700 perm/sec)   p_kst 7.027374e-01   p_cons 8.390244e-04   p_joint 1.000813e-03

Joint ci ratio: 1.112648e-01	ci left: 9.443500e-04	ci right 1.056389e-03	k: 1239	n:1240000
Cons ci ratio: 1.216201e-01	ci left: 7.861780e-04	ci right 8.887572e-04	k: 1037	n:1240000
KS ci ratio: 2.289805e-03	ci left: 7.018841e-01	ci right 7.034939e-01	k: 871335	n:1240000
NKX2-3   1240000 perm   734 sec   (1689 perm/sec)   p_kst 7.026895e-01   p_cons 8.362903e-04   p_joint 9.991935e-04

Joint ci ratio: 1.107745e-01	ci left: 9.453509e-04	ci right 1.056982e-03	k: 1250	n:1250000
Cons ci ratio: 1.211541e-01	ci left: 7.860943e-04	ci right 8.882414e-04	k: 1045	n:1250000
KS ci ratio: 2.280705e-03	ci left: 7.018730e-01	ci right 7.034764e-01	k: 878344	n:1250000
NKX2-3   1250000 perm   744 sec   (1679 perm/sec)   p_kst 7.026752e-01   p_cons 8.360000e-04   p_joint 1.000000e-03

Joint ci ratio: 1.105100e-01	ci left: 9.424782e-04	ci right 1.053487e-03	k: 1256	n:1260000
Cons ci ratio: 1.209234e-01	ci left: 7.829338e-04	ci right 8.844626e-04	k: 1049	n:1260000
KS ci ratio: 2.271403e-03	ci left: 7.019193e-01	ci right 7.035162e-01	k: 885425	n:1260000
NKX2-3   1260000 perm   755 sec   (1670 perm/sec)   p_kst 7.027183e-01   p_cons 8.325397e-04   p_joint 9.968254e-04

Joint ci ratio: 1.098130e-01	ci left: 9.473085e-04	ci right 1.058137e-03	k: 1272	n:1270000
Cons ci ratio: 1.200121e-01	ci left: 7.889880e-04	ci right 8.904761e-04	k: 1065	n:1270000
KS ci ratio: 2.262281e-03	ci left: 7.019523e-01	ci right 7.035429e-01	k: 892490	n:1270000
NKX2-3   1270000 perm   765 sec   (1660 perm/sec)   p_kst 7.027480e-01   p_cons 8.385827e-04   p_joint 1.001575e-03

Joint ci ratio: 1.093843e-01	ci left: 9.475060e-04	ci right 1.057897e-03	k: 1282	n:1280000
Cons ci ratio: 1.194530e-01	ci left: 7.904025e-04	ci right 8.915656e-04	k: 1075	n:1280000
KS ci ratio: 2.253189e-03	ci left: 7.019996e-01	ci right 7.035839e-01	k: 899574	n:1280000
NKX2-3   1280000 perm   775 sec   (1651 perm/sec)   p_kst 7.027922e-01   p_cons 8.398437e-04   p_joint 1.001563e-03

Joint ci ratio: 1.091295e-01	ci left: 9.446850e-04	ci right 1.054474e-03	k: 1288	n:1290000
Cons ci ratio: 1.192318e-01	ci left: 7.872835e-04	ci right 8.878476e-04	k: 1079	n:1290000
KS ci ratio: 2.244076e-03	ci left: 7.020702e-01	ci right 7.036482e-01	k: 906689	n:1290000
NKX2-3   1290000 perm   786 sec   (1642 perm/sec)   p_kst 7.028597e-01   p_cons 8.364341e-04   p_joint 9.984496e-04

Joint ci ratio: 1.086250e-01	ci left: 9.463976e-04	ci right 1.055845e-03	k: 1300	n:1300000
Cons ci ratio: 1.186291e-01	ci left: 7.894374e-04	ci right 8.897311e-04	k: 1090	n:1300000
KS ci ratio: 2.235142e-03	ci left: 7.021267e-01	ci right 7.036986e-01	k: 913787	n:1300000
NKX2-3   1300000 perm   797 sec   (1632 perm/sec)   p_kst 7.029131e-01   p_cons 8.384615e-04   p_joint 1.000000e-03

Joint ci ratio: 1.082513e-01	ci left: 9.458571e-04	ci right 1.054842e-03	k: 1309	n:1310000
Cons ci ratio: 1.181428e-01	ci left: 7.900779e-04	ci right 8.900128e-04	k: 1099	n:1310000
KS ci ratio: 2.226384e-03	ci left: 7.021693e-01	ci right 7.037351e-01	k: 920868	n:1310000
NKX2-3   1310000 perm   807 sec   (1623 perm/sec)   p_kst 7.029527e-01   p_cons 8.389313e-04   p_joint 9.992366e-04

Joint ci ratio: 1.077180e-01	ci left: 9.482741e-04	ci right 1.056965e-03	k: 1322	n:1320000
Cons ci ratio: 1.175563e-01	ci left: 7.921802e-04	ci right 8.918491e-04	k: 1110	n:1320000
KS ci ratio: 2.218025e-03	ci left: 7.021552e-01	ci right 7.037151e-01	k: 927875	n:1320000
NKX2-3   1320000 perm   818 sec   (1613 perm/sec)   p_kst 7.029356e-01   p_cons 8.409091e-04   p_joint 1.001515e-03

Joint ci ratio: 1.073132e-01	ci left: 9.484608e-04	ci right 1.056739e-03	k: 1332	n:1330000
Cons ci ratio: 1.170830e-01	ci left: 7.927923e-04	ci right 8.921088e-04	k: 1119	n:1330000
KS ci ratio: 2.209792e-03	ci left: 7.021353e-01	ci right 7.036893e-01	k: 934874	n:1330000
NKX2-3   1330000 perm   829 sec   (1604 perm/sec)   p_kst 7.029128e-01   p_cons 8.413534e-04   p_joint 1.001504e-03

Joint ci ratio: 1.071127e-01	ci left: 9.450139e-04	ci right 1.052684e-03	k: 1337	n:1340000
Cons ci ratio: 1.168747e-01	ci left: 7.897736e-04	ci right 8.885238e-04	k: 1123	n:1340000
KS ci ratio: 2.201669e-03	ci left: 7.021120e-01	ci right 7.036602e-01	k: 941868	n:1340000
NKX2-3   1340000 perm   840 sec   (1594 perm/sec)   p_kst 7.028866e-01   p_cons 8.380597e-04   p_joint 9.977612e-04

Joint ci ratio: 1.068337e-01	ci left: 9.430602e-04	ci right 1.050210e-03	k: 1344	n:1350000
Cons ci ratio: 1.165641e-01	ci left: 7.882381e-04	ci right 8.865163e-04	k: 1129	n:1350000
KS ci ratio: 2.193565e-03	ci left: 7.021024e-01	ci right 7.036449e-01	k: 948880	n:1350000
NKX2-3   1350000 perm   851 sec   (1585 perm/sec)   p_kst 7.028741e-01   p_cons 8.362963e-04   p_joint 9.955556e-04

Joint ci ratio: 1.064781e-01	ci left: 9.425671e-04	ci right 1.049282e-03	k: 1353	n:1360000
Cons ci ratio: 1.161026e-01	ci left: 7.888673e-04	ci right 8.868079e-04	k: 1138	n:1360000
KS ci ratio: 2.185492e-03	ci left: 7.021039e-01	ci right 7.036408e-01	k: 955907	n:1360000
NKX2-3   1360000 perm   863 sec   (1576 perm/sec)   p_kst 7.028728e-01   p_cons 8.367647e-04   p_joint 9.948529e-04

Joint ci ratio: 1.060093e-01	ci left: 9.442134e-04	ci right 1.050615e-03	k: 1365	n:1370000
Cons ci ratio: 1.154957e-01	ci left: 7.916147e-04	ci right 8.893475e-04	k: 1150	n:1370000
KS ci ratio: 2.177257e-03	ci left: 7.021537e-01	ci right 7.036848e-01	k: 963000	n:1370000
NKX2-3   1370000 perm   874 sec   (1567 perm/sec)   p_kst 7.029197e-01   p_cons 8.394161e-04   p_joint 9.963504e-04

Joint ci ratio: 1.055850e-01	ci left: 9.451314e-04	ci right 1.051184e-03	k: 1376	n:1380000
Cons ci ratio: 1.149971e-01	ci left: 7.929158e-04	ci right 8.903581e-04	k: 1160	n:1380000
KS ci ratio: 2.169607e-03	ci left: 7.021078e-01	ci right 7.036334e-01	k: 969962	n:1380000
NKX2-3   1380000 perm   885 sec   (1559 perm/sec)   p_kst 7.028710e-01   p_cons 8.405797e-04   p_joint 9.971014e-04

Joint ci ratio: 1.052417e-01	ci left: 9.446360e-04	ci right 1.050267e-03	k: 1385	n:1390000
Cons ci ratio: 1.145540e-01	ci left: 7.935004e-04	ci right 8.906133e-04	k: 1169	n:1390000
KS ci ratio: 2.161873e-03	ci left: 7.020942e-01	ci right 7.036143e-01	k: 976968	n:1390000
NKX2-3   1390000 perm   896 sec   (1551 perm/sec)   p_kst 7.028547e-01   p_cons 8.410072e-04   p_joint 9.964029e-04

Joint ci ratio: 1.050525e-01	ci left: 9.413660e-04	ci right 1.046430e-03	k: 1390	n:1400000
Cons ci ratio: 1.143588e-01	ci left: 7.906078e-04	ci right 8.871907e-04	k: 1173	n:1400000
KS ci ratio: 2.154162e-03	ci left: 7.020922e-01	ci right 7.036069e-01	k: 983990	n:1400000
NKX2-3   1400000 perm   908 sec   (1543 perm/sec)   p_kst 7.028500e-01   p_cons 8.378571e-04   p_joint 9.928571e-04

Joint ci ratio: 1.047143e-01	ci left: 9.409052e-04	ci right 1.045559e-03	k: 1399	n:1410000
Cons ci ratio: 1.140195e-01	ci left: 7.898234e-04	ci right 8.860049e-04	k: 1180	n:1410000
KS ci ratio: 2.146552e-03	ci left: 7.020867e-01	ci right 7.035961e-01	k: 991007	n:1410000
NKX2-3   1410000 perm   919 sec   (1534 perm/sec)   p_kst 7.028418e-01   p_cons 8.368794e-04   p_joint 9.921986e-04

Joint ci ratio: 1.041577e-01	ci left: 9.445667e-04	ci right 1.049035e-03	k: 1414	n:1420000
Cons ci ratio: 1.133969e-01	ci left: 7.931559e-04	ci right 8.891805e-04	k: 1193	n:1420000
KS ci ratio: 2.138823e-03	ci left: 7.021201e-01	ci right 7.036241e-01	k: 998079	n:1420000
NKX2-3   1420000 perm   932 sec   (1524 perm/sec)   p_kst 7.028725e-01   p_cons 8.401408e-04   p_joint 9.957746e-04

Joint ci ratio: 1.038280e-01	ci left: 9.440913e-04	ci right 1.048157e-03	k: 1423	n:1430000
Cons ci ratio: 1.130660e-01	ci left: 7.923658e-04	ci right 8.879962e-04	k: 1200	n:1430000
KS ci ratio: 2.131509e-03	ci left: 7.020880e-01	ci right 7.035867e-01	k: 1005058	n:1430000
NKX2-3   1430000 perm   945 sec   (1513 perm/sec)   p_kst 7.028378e-01   p_cons 8.391608e-04   p_joint 9.951049e-04

Joint ci ratio: 1.032135e-01	ci left: 9.490351e-04	ci right 1.052989e-03	k: 1440	n:1440000
Cons ci ratio: 1.123662e-01	ci left: 7.969863e-04	ci right 8.925396e-04	k: 1215	n:1440000
KS ci ratio: 2.123899e-03	ci left: 7.021292e-01	ci right 7.036227e-01	k: 1012142	n:1440000
NKX2-3   1440000 perm   958 sec   (1503 perm/sec)   p_kst 7.028764e-01   p_cons 8.437500e-04   p_joint 1.000000e-03

Joint ci ratio: 1.027510e-01	ci left: 9.512247e-04	ci right 1.054923e-03	k: 1453	n:1450000
Cons ci ratio: 1.118613e-01	ci left: 7.988634e-04	ci right 8.941830e-04	k: 1226	n:1450000
KS ci ratio: 2.116617e-03	ci left: 7.021209e-01	ci right 7.036093e-01	k: 1019155	n:1450000
NKX2-3   1450000 perm   972 sec   (1492 perm/sec)   p_kst 7.028655e-01   p_cons 8.455172e-04   p_joint 1.002069e-03

Joint ci ratio: 1.025046e-01	ci left: 9.493809e-04	ci right 1.052615e-03	k: 1460	n:1460000
Cons ci ratio: 1.116342e-01	ci left: 7.967206e-04	ci right 8.915788e-04	k: 1231	n:1460000
KS ci ratio: 2.109383e-03	ci left: 7.021182e-01	ci right 7.036015e-01	k: 1026176	n:1460000
NKX2-3   1460000 perm   985 sec   (1482 perm/sec)   p_kst 7.028603e-01   p_cons 8.431507e-04   p_joint 1.000000e-03

Joint ci ratio: 1.020862e-01	ci left: 9.508770e-04	ci right 1.053826e-03	k: 1472	n:1470000
Cons ci ratio: 1.113185e-01	ci left: 7.959299e-04	ci right 8.904083e-04	k: 1238	n:1470000
KS ci ratio: 2.102287e-03	ci left: 7.021027e-01	ci right 7.035809e-01	k: 1033178	n:1470000
NKX2-3   1470000 perm   999 sec   (1471 perm/sec)   p_kst 7.028422e-01   p_cons 8.421769e-04   p_joint 1.001361e-03

Joint ci ratio: 1.017757e-01	ci left: 9.503782e-04	ci right 1.052942e-03	k: 1481	n:1480000
Cons ci ratio: 1.109608e-01	ci left: 7.958071e-04	ci right 8.899477e-04	k: 1246	n:1480000
KS ci ratio: 2.095282e-03	ci left: 7.020832e-01	ci right 7.035565e-01	k: 1040174	n:1480000
NKX2-3   1480000 perm   1013 sec   (1461 perm/sec)   p_kst 7.028203e-01   p_cons 8.418919e-04   p_joint 1.000676e-03

Joint ci ratio: 1.013322e-01	ci left: 9.525031e-04	ci right 1.054822e-03	k: 1494	n:1490000
Cons ci ratio: 1.105185e-01	ci left: 7.969916e-04	ci right 8.908721e-04	k: 1256	n:1490000
KS ci ratio: 2.087995e-03	ci left: 7.021346e-01	ci right 7.036028e-01	k: 1047275	n:1490000
NKX2-3   1490000 perm   1027 sec   (1451 perm/sec)   p_kst 7.028691e-01   p_cons 8.429530e-04   p_joint 1.002685e-03

Joint ci ratio: 1.010959e-01	ci left: 9.507016e-04	ci right 1.052574e-03	k: 1501	n:1500000
Cons ci ratio: 1.102558e-01	ci left: 7.955679e-04	ci right 8.890433e-04	k: 1262	n:1500000
KS ci ratio: 2.081069e-03	ci left: 7.021279e-01	ci right 7.035913e-01	k: 1054290	n:1500000
NKX2-3   1500000 perm   1041 sec   (1441 perm/sec)   p_kst 7.028600e-01   p_cons 8.413333e-04   p_joint 1.000667e-03

Joint ci ratio: 1.008278e-01	ci left: 9.495697e-04	ci right 1.051035e-03	k: 1509	n:1510000
Cons ci ratio: 1.100383e-01	ci left: 7.935192e-04	ci right 8.865581e-04	k: 1267	n:1510000
KS ci ratio: 2.074399e-03	ci left: 7.020836e-01	ci right 7.035421e-01	k: 1061248	n:1510000
NKX2-3   1510000 perm   1055 sec   (1431 perm/sec)   p_kst 7.028132e-01   p_cons 8.390728e-04   p_joint 9.993377e-04

Joint ci ratio: 1.005950e-01	ci left: 9.478118e-04	ci right 1.048842e-03	k: 1516	n:1520000
Cons ci ratio: 1.099519e-01	ci left: 7.895782e-04	ci right 8.820776e-04	k: 1269	n:1520000
KS ci ratio: 2.067525e-03	ci left: 7.020938e-01	ci right 7.035475e-01	k: 1068288	n:1520000
NKX2-3   1520000 perm   1069 sec   (1422 perm/sec)   p_kst 7.028211e-01   p_cons 8.348684e-04   p_joint 9.973684e-04

Joint ci ratio: 1.003638e-01	ci left: 9.460771e-04	ci right 1.046677e-03	k: 1523	n:1530000
Cons ci ratio: 1.097362e-01	ci left: 7.875957e-04	ci right 8.796702e-04	k: 1274	n:1530000
KS ci ratio: 2.060684e-03	ci left: 7.021111e-01	ci right 7.035600e-01	k: 1075339	n:1530000
NKX2-3   1530000 perm   1083 sec   (1412 perm/sec)   p_kst 7.028359e-01   p_cons 8.326797e-04   p_joint 9.954248e-04

Joint ci ratio: 1.000361e-01	ci left: 9.462645e-04	ci right 1.046536e-03	k: 1533	n:1540000
Cons ci ratio: 1.093935e-01	ci left: 7.875339e-04	ci right 8.792951e-04	k: 1282	n:1540000
KS ci ratio: 2.054079e-03	ci left: 7.020937e-01	ci right 7.035380e-01	k: 1082337	n:1540000
NKX2-3   1540000 perm   1098 sec   (1403 perm/sec)   p_kst 7.028162e-01   p_cons 8.324675e-04   p_joint 9.954545e-04

Joint ci ratio: 9.971164e-02	ci left: 9.464501e-04	ci right 1.046397e-03	k: 1543	n:1550000
Cons ci ratio: 1.090541e-01	ci left: 7.874733e-04	ci right 8.789245e-04	k: 1290	n:1550000
KS ci ratio: 2.047367e-03	ci left: 7.021114e-01	ci right 7.035510e-01	k: 1089389	n:1550000
NKX2-3   1550000 perm   1112 sec   (1394 perm/sec)   p_kst 7.028316e-01   p_cons 8.322581e-04   p_joint 9.954839e-04

Joint ci ratio: 9.948647e-02	ci left: 9.447584e-04	ci right 1.044289e-03	k: 1550	n:1560000
Cons ci ratio: 1.088436e-01	ci left: 7.855432e-04	ci right 8.765828e-04	k: 1295	n:1560000
KS ci ratio: 2.040855e-03	ci left: 7.021014e-01	ci right 7.035363e-01	k: 1096398	n:1560000
NKX2-3   1560000 perm   1127 sec   (1385 perm/sec)   p_kst 7.028192e-01   p_cons 8.301282e-04   p_joint 9.935897e-04

Joint ci ratio: 9.904036e-02	ci left: 9.474368e-04	ci right 1.046775e-03	k: 1564	n:1570000
Cons ci ratio: 1.083845e-01	ci left: 7.873558e-04	ci right 8.781961e-04	k: 1306	n:1570000
KS ci ratio: 2.034476e-03	ci left: 7.020768e-01	ci right 7.035072e-01	k: 1103384	n:1570000
NKX2-3   1570000 perm   1141 sec   (1376 perm/sec)   p_kst 7.027924e-01   p_cons 8.318471e-04   p_joint 9.961783e-04

Joint ci ratio: 9.888268e-02	ci left: 9.445265e-04	ci right 1.043393e-03	k: 1569	n:1580000
Cons ci ratio: 1.082192e-01	ci left: 7.848355e-04	ci right 8.752382e-04	k: 1310	n:1580000
KS ci ratio: 2.027889e-03	ci left: 7.021076e-01	ci right 7.035334e-01	k: 1110457	n:1580000
NKX2-3   1580000 perm   1156 sec   (1367 perm/sec)   p_kst 7.028209e-01   p_cons 8.291139e-04   p_joint 9.930380e-04

Joint ci ratio: 9.866307e-02	ci left: 9.428798e-04	ci right 1.041342e-03	k: 1576	n:1590000
Cons ci ratio: 1.079725e-01	ci left: 7.835710e-04	ci right 8.736091e-04	k: 1316	n:1590000
KS ci ratio: 2.021436e-03	ci left: 7.021236e-01	ci right 7.035449e-01	k: 1117507	n:1590000
NKX2-3   1590000 perm   1170 sec   (1358 perm/sec)   p_kst 7.028346e-01   p_cons 8.276730e-04   p_joint 9.911950e-04

Joint ci ratio: 9.844491e-02	ci left: 9.412539e-04	ci right 1.039317e-03	k: 1583	n:1600000
Cons ci ratio: 1.076867e-01	ci left: 7.829307e-04	ci right 8.726420e-04	k: 1323	n:1600000
KS ci ratio: 2.015065e-03	ci left: 7.021349e-01	ci right 7.035518e-01	k: 1124550	n:1600000
NKX2-3   1600000 perm   1185 sec   (1350 perm/sec)   p_kst 7.028437e-01   p_cons 8.268750e-04   p_joint 9.893750e-04

Joint ci ratio: 9.816645e-02	ci left: 9.408602e-04	ci right 1.038589e-03	k: 1592	n:1610000
Cons ci ratio: 1.074841e-01	ci left: 7.810897e-04	ci right 8.704111e-04	k: 1328	n:1610000
KS ci ratio: 2.008724e-03	ci left: 7.021524e-01	ci right 7.035649e-01	k: 1131603	n:1610000
NKX2-3   1610000 perm   1200 sec   (1341 perm/sec)   p_kst 7.028590e-01   p_cons 8.248447e-04   p_joint 9.888199e-04

Joint ci ratio: 9.782923e-02	ci left: 9.416762e-04	ci right 1.039134e-03	k: 1603	n:1620000
Cons ci ratio: 1.071620e-01	ci left: 7.810739e-04	ci right 8.701089e-04	k: 1336	n:1620000
KS ci ratio: 2.002421e-03	ci left: 7.021740e-01	ci right 7.035821e-01	k: 1138663	n:1620000
NKX2-3   1620000 perm   1215 sec   (1333 perm/sec)   p_kst 7.028784e-01   p_cons 8.246914e-04   p_joint 9.895062e-04

Joint ci ratio: 9.746526e-02	ci left: 9.430812e-04	ci right 1.040301e-03	k: 1615	n:1630000
Cons ci ratio: 1.067238e-01	ci left: 7.828500e-04	ci right 8.716997e-04	k: 1347	n:1630000
KS ci ratio: 1.996453e-03	ci left: 7.021376e-01	ci right 7.035414e-01	k: 1145629	n:1630000
NKX2-3   1630000 perm   1230 sec   (1325 perm/sec)   p_kst 7.028399e-01   p_cons 8.263804e-04   p_joint 9.907975e-04

Joint ci ratio: 9.704568e-02	ci left: 9.456598e-04	ci right 1.042702e-03	k: 1629	n:1640000
Cons ci ratio: 1.062127e-01	ci left: 7.857924e-04	ci right 8.745222e-04	k: 1360	n:1640000
KS ci ratio: 1.990266e-03	ci left: 7.021591e-01	ci right 7.035585e-01	k: 1152689	n:1640000
NKX2-3   1640000 perm   1246 sec   (1317 perm/sec)   p_kst 7.028591e-01   p_cons 8.292683e-04   p_joint 9.932927e-04

Joint ci ratio: 9.669036e-02	ci left: 9.470251e-04	ci right 1.043831e-03	k: 1641	n:1650000
Cons ci ratio: 1.058246e-01	ci left: 7.869299e-04	ci right 8.754433e-04	k: 1370	n:1650000
KS ci ratio: 1.984279e-03	ci left: 7.021499e-01	ci right 7.035451e-01	k: 1159699	n:1650000
NKX2-3   1650000 perm   1261 sec   (1309 perm/sec)   p_kst 7.028479e-01   p_cons 8.303030e-04   p_joint 9.945455e-04

Joint ci ratio: 9.636807e-02	ci left: 9.477866e-04	ci right 1.044329e-03	k: 1652	n:1660000
Cons ci ratio: 1.055172e-01	ci left: 7.868813e-04	ci right 8.751162e-04	k: 1378	n:1660000
KS ci ratio: 1.978212e-03	ci left: 7.021692e-01	ci right 7.035602e-01	k: 1166756	n:1660000
NKX2-3   1660000 perm   1276 sec   (1301 perm/sec)   p_kst 7.028651e-01   p_cons 8.301205e-04   p_joint 9.951807e-04

Joint ci ratio: 9.610682e-02	ci left: 9.473708e-04	ci right 1.043595e-03	k: 1661	n:1670000
Cons ci ratio: 1.052125e-01	ci left: 7.868336e-04	ci right 8.747926e-04	k: 1386	n:1670000
KS ci ratio: 1.972321e-03	ci left: 7.021625e-01	ci right 7.035494e-01	k: 1173770	n:1670000
NKX2-3   1670000 perm   1291 sec   (1293 perm/sec)   p_kst 7.028563e-01   p_cons 8.299401e-04   p_joint 9.946108e-04

Joint ci ratio: 9.584768e-02	ci left: 9.469602e-04	ci right 1.042869e-03	k: 1670	n:1680000
Cons ci ratio: 1.049480e-01	ci left: 7.862072e-04	ci right 8.738616e-04	k: 1393	n:1680000
KS ci ratio: 1.966674e-03	ci left: 7.021154e-01	ci right 7.034982e-01	k: 1180716	n:1680000
NKX2-3   1680000 perm   1307 sec   (1286 perm/sec)   p_kst 7.028071e-01   p_cons 8.291667e-04   p_joint 9.940476e-04

Joint ci ratio: 9.564764e-02	ci left: 9.453997e-04	ci right 1.040939e-03	k: 1677	n:1690000
Cons ci ratio: 1.047230e-01	ci left: 7.850123e-04	ci right 8.723342e-04	k: 1399	n:1690000
KS ci ratio: 1.960683e-03	ci left: 7.021524e-01	ci right 7.035310e-01	k: 1187803	n:1690000
NKX2-3   1690000 perm   1322 sec   (1278 perm/sec)   p_kst 7.028420e-01   p_cons 8.278107e-04   p_joint 9.923077e-04

Joint ci ratio: 9.542050e-02	ci left: 9.444319e-04	ci right 1.039634e-03	k: 1685	n:1700000
Cons ci ratio: 1.044622e-01	ci left: 7.844045e-04	ci right 8.714282e-04	k: 1406	n:1700000
KS ci ratio: 1.954763e-03	ci left: 7.021853e-01	ci right 7.035599e-01	k: 1194884	n:1700000
NKX2-3   1700000 perm   1338 sec   (1271 perm/sec)   p_kst 7.028729e-01   p_cons 8.270588e-04   p_joint 9.911765e-04

Joint ci ratio: 9.176160e-02	ci left: 1.017153e-03	ci right 1.115543e-03	k: 1822	n:1710000
Cons ci ratio: 1.040929e-01	ci left: 7.855128e-04	ci right 8.723325e-04	k: 1416	n:1710000
KS ci ratio: 1.948932e-03	ci left: 7.022103e-01	ci right 7.035808e-01	k: 1201952	n:1710000
NKX2-3   1710000 perm   1354 sec   (1263 perm/sec)   p_kst 7.028959e-01   p_cons 8.280702e-04   p_joint 1.065497e-03

Joint ci ratio: 9.151097e-02	ci left: 1.016920e-03	ci right 1.115005e-03	k: 1832	n:1720000
Cons ci ratio: 1.038368e-01	ci left: 7.849098e-04	ci right 8.714364e-04	k: 1423	n:1720000
KS ci ratio: 1.943304e-03	ci left: 7.022025e-01	ci right 7.035689e-01	k: 1208964	n:1720000
NKX2-3   1720000 perm   1369 sec   (1256 perm/sec)   p_kst 7.028860e-01   p_cons 8.273256e-04   p_joint 1.065116e-03

Joint ci ratio: 9.128718e-02	ci left: 1.016125e-03	ci right 1.113881e-03	k: 1841	n:1730000
Cons ci ratio: 1.036188e-01	ci left: 7.837509e-04	ci right 8.699573e-04	k: 1429	n:1730000
KS ci ratio: 1.937765e-03	ci left: 7.021860e-01	ci right 7.035486e-01	k: 1215961	n:1730000
NKX2-3   1730000 perm   1385 sec   (1249 perm/sec)   p_kst 7.028676e-01   p_cons 8.260116e-04   p_joint 1.064162e-03

Joint ci ratio: 9.106502e-02	ci left: 1.015340e-03	ci right 1.112770e-03	k: 1850	n:1740000
Cons ci ratio: 1.033661e-01	ci left: 7.831655e-04	ci right 8.690847e-04	k: 1436	n:1740000
KS ci ratio: 1.932169e-03	ci left: 7.021922e-01	ci right 7.035508e-01	k: 1222997	n:1740000
NKX2-3   1740000 perm   1401 sec   (1242 perm/sec)   p_kst 7.028718e-01   p_cons 8.252874e-04   p_joint 1.063218e-03

Joint ci ratio: 9.419940e-02	ci left: 9.419948e-04	ci right 1.035669e-03	k: 1729	n:1750000
Cons ci ratio: 1.032227e-01	ci left: 7.809169e-04	ci right 8.664633e-04	k: 1440	n:1750000
KS ci ratio: 1.926637e-03	ci left: 7.021949e-01	ci right 7.035496e-01	k: 1230027	n:1750000
NKX2-3   1750000 perm   1416 sec   (1236 perm/sec)   p_kst 7.028726e-01   p_cons 8.228571e-04   p_joint 9.880000e-04

Joint ci ratio: 9.067411e-02	ci left: 1.012686e-03	ci right 1.109422e-03	k: 1866	n:1760000
Cons ci ratio: 1.030441e-01	ci left: 7.792474e-04	ci right 8.644544e-04	k: 1445	n:1760000
KS ci ratio: 1.921158e-03	ci left: 7.021964e-01	ci right 7.035473e-01	k: 1237055	n:1760000
NKX2-3   1760000 perm   1429 sec   (1231 perm/sec)   p_kst 7.028722e-01   p_cons 8.210227e-04   p_joint 1.060227e-03

Joint ci ratio: 9.371318e-02	ci left: 9.412814e-04	ci right 1.034375e-03	k: 1747	n:1770000
Cons ci ratio: 1.028311e-01	ci left: 7.781474e-04	ci right 8.630476e-04	k: 1451	n:1770000
KS ci ratio: 1.915710e-03	ci left: 7.022013e-01	ci right 7.035483e-01	k: 1244089	n:1770000
NKX2-3   1770000 perm   1443 sec   (1226 perm/sec)   p_kst 7.028751e-01   p_cons 8.197740e-04   p_joint 9.870056e-04

Joint ci ratio: 9.355286e-02	ci left: 9.392851e-04	ci right 1.032014e-03	k: 1753	n:1780000
Cons ci ratio: 1.026546e-01	ci left: 7.765126e-04	ci right 8.610802e-04	k: 1456	n:1780000
KS ci ratio: 1.910364e-03	ci left: 7.021938e-01	ci right 7.035370e-01	k: 1251101	n:1780000
NKX2-3   1780000 perm   1457 sec   (1221 perm/sec)   p_kst 7.028657e-01   p_cons 8.179775e-04   p_joint 9.848315e-04

Joint ci ratio: 9.339336e-02	ci left: 9.373112e-04	ci right 1.029679e-03	k: 1759	n:1790000
Cons ci ratio: 1.024439e-01	ci left: 7.754405e-04	ci right 8.597076e-04	k: 1462	n:1790000
KS ci ratio: 1.905025e-03	ci left: 7.021947e-01	ci right 7.035342e-01	k: 1258128	n:1790000
NKX2-3   1790000 perm   1472 sec   (1216 perm/sec)   p_kst 7.028648e-01   p_cons 8.167598e-04   p_joint 9.826816e-04

Joint ci ratio: 9.307654e-02	ci left: 9.386152e-04	ci right 1.030780e-03	k: 1771	n:1800000
Cons ci ratio: 1.020262e-01	ci left: 7.776288e-04	ci right 8.617684e-04	k: 1474	n:1800000
KS ci ratio: 1.899694e-03	ci left: 7.022035e-01	ci right 7.035392e-01	k: 1265169	n:1800000
NKX2-3   1800000 perm   1486 sec   (1211 perm/sec)   p_kst 7.028717e-01   p_cons 8.188889e-04   p_joint 9.838889e-04

Joint ci ratio: 9.276292e-02	ci left: 9.399053e-04	ci right 1.031869e-03	k: 1783	n:1810000
Cons ci ratio: 1.016136e-01	ci left: 7.797935e-04	ci right 8.638058e-04	k: 1486	n:1810000
KS ci ratio: 1.894396e-03	ci left: 7.022149e-01	ci right 7.035469e-01	k: 1272215	n:1810000
NKX2-3   1810000 perm   1500 sec   (1207 perm/sec)   p_kst 7.028812e-01   p_cons 8.209945e-04   p_joint 9.850829e-04

Joint ci ratio: 9.260741e-02	ci left: 9.379612e-04	ci right 1.029573e-03	k: 1789	n:1820000
Cons ci ratio: 1.014774e-01	ci left: 7.776509e-04	ci right 8.613133e-04	k: 1490	n:1820000
KS ci ratio: 1.889335e-03	ci left: 7.021833e-01	ci right 7.035117e-01	k: 1279183	n:1820000
NKX2-3   1820000 perm   1514 sec   (1202 perm/sec)   p_kst 7.028478e-01   p_cons 8.186813e-04   p_joint 9.829670e-04

Joint ci ratio: 8.897476e-02	ci left: 1.012410e-03	ci right 1.107213e-03	k: 1938	n:1830000
Cons ci ratio: 1.009705e-01	ci left: 7.813907e-04	ci right 8.650108e-04	k: 1505	n:1830000
KS ci ratio: 1.884158e-03	ci left: 7.021870e-01	ci right 7.035118e-01	k: 1286215	n:1830000
NKX2-3   1830000 perm   1528 sec   (1197 perm/sec)   p_kst 7.028497e-01   p_cons 8.224044e-04   p_joint 1.059016e-03

Joint ci ratio: 9.204345e-02	ci left: 9.394465e-04	ci right 1.030614e-03	k: 1811	n:1840000
Cons ci ratio: 1.008034e-01	ci left: 7.797928e-04	ci right 8.630956e-04	k: 1510	n:1840000
KS ci ratio: 1.879203e-03	ci left: 7.021505e-01	ci right 7.034717e-01	k: 1293173	n:1840000
NKX2-3   1840000 perm   1543 sec   (1193 perm/sec)   p_kst 7.028114e-01   p_cons 8.206522e-04   p_joint 9.842391e-04

Joint ci ratio: 9.191684e-02	ci left: 9.370089e-04	ci right 1.027808e-03	k: 1816	n:1850000
Cons ci ratio: 1.006704e-01	ci left: 7.776854e-04	ci right 8.606469e-04	k: 1514	n:1850000
KS ci ratio: 1.874178e-03	ci left: 7.021387e-01	ci right 7.034564e-01	k: 1300176	n:1850000
NKX2-3   1850000 perm   1558 sec   (1188 perm/sec)   p_kst 7.027978e-01   p_cons 8.183784e-04   p_joint 9.816216e-04

Joint ci ratio: 8.856496e-02	ci left: 1.005543e-03	ci right 1.099247e-03	k: 1956	n:1860000
Cons ci ratio: 1.005048e-01	ci left: 7.761248e-04	ci right 8.587755e-04	k: 1519	n:1860000
KS ci ratio: 1.869008e-03	ci left: 7.021684e-01	ci right 7.034825e-01	k: 1307256	n:1860000
NKX2-3   1860000 perm   1572 sec   (1183 perm/sec)   p_kst 7.028258e-01   p_cons 8.166667e-04   p_joint 1.051613e-03

Joint ci ratio: 9.158995e-02	ci left: 9.337797e-04	ci right 1.023927e-03	k: 1829	n:1870000
Cons ci ratio: 1.003070e-01	ci left: 7.751023e-04	ci right 8.574723e-04	k: 1525	n:1870000
KS ci ratio: 1.863838e-03	ci left: 7.022075e-01	ci right 7.035181e-01	k: 1314354	n:1870000
NKX2-3   1870000 perm   1587 sec   (1178 perm/sec)   p_kst 7.028631e-01   p_cons 8.155080e-04   p_joint 9.780749e-04

Joint ci ratio: 9.124150e-02	ci left: 9.360894e-04	ci right 1.026098e-03	k: 1843	n:1880000
Cons ci ratio: 9.988236e-02	ci left: 7.777213e-04	ci right 8.599991e-04	k: 1538	n:1880000
KS ci ratio: 1.858669e-03	ci left: 7.022552e-01	ci right 7.035622e-01	k: 1321469	n:1880000
NKX2-3   1880000 perm   1602 sec   (1173 perm/sec)   p_kst 7.029090e-01   p_cons 8.180851e-04   p_joint 9.803191e-04

Outputting figure to mutsig2_images.part000000000115/NKX2-3.2_1103_1880000_0.70291_0.00081809_0.00098032.png
                gene_name: NKX2-3
               theta_stop: 0.100 
                    nperm: 1880000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.00082 
      ci_cons_bounds_left: 0.00078 
     ci_cons_bounds_right: 0.00086 
                  p_joint: 0.00098 
     ci_joint_bounds_left: 0.00094 
    ci_joint_bounds_right: 0.0010 

Current progress: 91 percent done.
NLRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
Cons ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
KS ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
NLRC3   10000 perm   2 sec   (6271 perm/sec)   p_kst 7.579000e-01   p_cons 8.271000e-01   p_joint 8.941000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC3.2_3267_10000_0.7579_0.8271_0.8941.png
                gene_name: NLRC3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 93 percent done.
NMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
KS ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
NMT2   10000 perm   1 sec   (7152 perm/sec)   p_kst 5.995000e-01   p_cons 6.017000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMT2.2_1545_10000_0.5995_0.6017_1.png
                gene_name: NMT2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
NOBOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
NOBOX   10000 perm   1 sec   (7045 perm/sec)   p_kst 3.390000e-01   p_cons 4.298000e-01   p_joint 3.076000e-01

Outputting figure to mutsig2_images.part000000000115/NOBOX.2_1757_10000_0.339_0.4298_0.3076.png
                gene_name: NOBOX
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 96 percent done.
NOC3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
Cons ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
KS ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
NOC3L   10000 perm   2 sec   (6653 perm/sec)   p_kst 3.437000e-01   p_cons 7.357000e-01   p_joint 4.642000e-01

Outputting figure to mutsig2_images.part000000000115/NOC3L.2_2487_10000_0.3437_0.7357_0.4642.png
                gene_name: NOC3L
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 98 percent done.
NOL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
Cons ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
KS ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
NOL11   10000 perm   1 sec   (6870 perm/sec)   p_kst 9.450000e-01   p_cons 1.925000e-01   p_joint 2.567000e-01

Outputting figure to mutsig2_images.part000000000115/NOL11.2_2232_10000_0.945_0.1925_0.2567.png
                gene_name: NOL11
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000115
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 115 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 4422236: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000116> was used as the working directory.
Started at Wed Oct 24 18:00:59 2012
Results reported at Wed Oct 24 18:41:47 2012

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------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000116.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000116.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 116  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000116.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2451.95 sec.
    Max Memory :      5205 MB
    Max Swap   :      7873 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
116
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 116
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 116: processing genes 10405 - 10495
Calculating significance of each gene.
Using projection method.
10405	NOL3	1
10406	NOL4	1
10407	NOL6	8.089478e-01
10408	NOL7	1
10409	NOL8	9.765566e-01
10410	NOL9	6.375057e-01
10411	NOLC1	8.987728e-01
10412	NOM1	9.553839e-01
10413	NOMO1	7.208088e-01
10414	NOMO2	8.807557e-01
10415	NOMO3	1
10416	NONO	4.583573e-01
10417	NOP10	1
10418	NOP14	9.954655e-01
10419	NOP16	1.870114e-01
10420	NOP2	9.890942e-01
10421	NOP56	3.523359e-01
10422	NOP58	9.554846e-01
10423	NOS1	9.943415e-01
10424	NOS1AP	3.572559e-01
10425	NOS2	7.837224e-01
10426	NOS3	1
10427	NOSIP	1
10428	NOSTRIN	8.335752e-01
10429	NOTCH1	9.947178e-01
10430	NOTCH2	1
10431	NOTCH2NL	1.811888e-01
10432	NOTCH3	9.985026e-01
10433	NOTCH4	1.164278e-01
10434	NOTUM	7.327921e-01
10435	NOV	3.308645e-01
10436	NOVA1	1.100526e-03
10437	NOVA2	5.763053e-02
10438	NOX1	5.241909e-01
10439	NOX3	2.948487e-01
10440	NOX4	7.534599e-01
10441	NOX5	2.705138e-01
10442	NOXA1	5.351036e-01
10443	NOXO1	7.697488e-01
10444	NPAS1	1
10445	NPAS2	1
10446	NPAS3	5.699496e-01
10447	NPAS4	8.171443e-01
10448	NPAT	9.869662e-01
10449	NPB	1
10450	NPBWR1	1.500667e-01
10451	NPBWR2	6.469708e-01
10452	NPC1	9.983768e-01
10453	NPC1L1	7.177510e-01
10454	NPC2	2.338301e-01
10455	NPDC1	1
10456	NPEPL1	5.667942e-01
10457	NPEPPS	8.769528e-01
10458	NPFF	1
10459	NPFFR1	1
10460	NPFFR2	1.904905e-04
10461	NPHP1	1
10462	NPHP3	1
10463	NPHP4	9.939537e-01
10464	NPHS1	9.982725e-01
10465	NPHS2	5.205458e-01
10466	NPIP	4.712441e-02
10467	NPL	2.430951e-01
10468	NPLOC4	3.137180e-01
10469	NPM1	1
10470	NPM2	5.497082e-01
10471	NPM3	5.336835e-01
10472	NPNT	5.824122e-01
10473	NPPA	5.334989e-01
10474	NPPB	1
10475	NPPC	1
In gene NPR1 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 2542    n = 1	mu =   9.71e-07
10476	NPR1	3.340047e-01
10477	NPR2	1
10478	NPR3	3.984947e-03
10479	NPRL2	8.067834e-01
10480	NPRL3	1
10481	NPS	1.639858e-02
10482	NPSR1	9.190383e-04
10483	NPTN	1
10484	NPTX1	5.662581e-01
10485	NPTX2	3.162721e-01
10486	NPTXR	4.640290e-01
10487	NPVF	1
10488	NPW	1
10489	NPY	3.365259e-01
10490	NPY1R	1.311811e-03
10491	NPY2R	1
10492	NPY5R	7.094393e-01
10493	NQO1	5.628275e-01
10494	NQO2	2.172195e-01
10495	NR0B1	7.903032e-01
Done

Running MutSig 2:
Scatter job 116: processing genes 10405 - 10495
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NOTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
NOTCH2   10000 perm   3 sec   (3009 perm/sec)   p_kst 5.983000e-01   p_cons 1.921000e-01   p_joint 4.539000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2.28_7552_10000_0.5983_0.1921_0.4539.png
                gene_name: NOTCH2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 2 percent done.
NOTCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
Cons ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
KS ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
NOTCH4   10000 perm   2 sec   (4216 perm/sec)   p_kst 1.599000e-01   p_cons 3.535000e-01   p_joint 3.012000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH4.23_6132_10000_0.1599_0.3535_0.3012.png
                gene_name: NOTCH4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 3 percent done.
NOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
NOS2   10000 perm   2 sec   (4398 perm/sec)   p_kst 1.861000e-01   p_cons 6.740000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000116/NOS2.14_3566_10000_0.1861_0.674_0.3387.png
                gene_name: NOS2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 5 percent done.
NPC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
KS ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
NPC1L1   10000 perm   2 sec   (4524 perm/sec)   p_kst 2.773000e-01   p_cons 3.380000e-02   p_joint 8.460000e-02

Joint ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
Cons ci ratio: 1.538196e-01	ci left: 2.902635e-02	ci right 3.391111e-02	k: 628	n:20000
KS ci ratio: 4.453673e-02	ci left: 2.729406e-01	ci right 2.854237e-01	k: 5583	n:20000
NPC1L1   20000 perm   5 sec   (4052 perm/sec)   p_kst 2.791500e-01   p_cons 3.140000e-02   p_joint 7.405000e-02

Joint ci ratio: 8.033266e-02	ci left: 7.057180e-02	ci right 7.651110e-02	k: 2205	n:30000
Cons ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
KS ci ratio: 3.597658e-02	ci left: 2.784045e-01	ci right 2.886375e-01	k: 8505	n:30000
NPC1L1   30000 perm   8 sec   (3911 perm/sec)   p_kst 2.835000e-01   p_cons 3.086667e-02   p_joint 7.350000e-02

Joint ci ratio: 7.441278e-02	ci left: 6.245584e-02	ci right 6.730756e-02	k: 2594	n:40000
Cons ci ratio: 1.106436e-01	ci left: 2.873917e-02	ci right 3.212945e-02	k: 1216	n:40000
KS ci ratio: 3.111135e-02	ci left: 2.796837e-01	ci right 2.885476e-01	k: 11364	n:40000
NPC1L1   40000 perm   10 sec   (3818 perm/sec)   p_kst 2.841000e-01   p_cons 3.040000e-02   p_joint 6.485000e-02

Joint ci ratio: 6.986009e-02	ci left: 5.716673e-02	ci right 6.132463e-02	k: 2961	n:50000
Cons ci ratio: 9.843855e-02	ci left: 2.922478e-02	ci right 3.227002e-02	k: 1536	n:50000
KS ci ratio: 2.784088e-02	ci left: 2.799505e-01	ci right 2.878746e-01	k: 14195	n:50000
NPC1L1   50000 perm   13 sec   (3741 perm/sec)   p_kst 2.839000e-01   p_cons 3.072000e-02   p_joint 5.922000e-02

Outputting figure to mutsig2_images.part000000000116/NPC1L1.12_4160_50000_0.2839_0.03072_0.05922.png
                gene_name: NPC1L1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 6 percent done.
NOVA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
Cons ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
KS ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
NOVA1   10000 perm   2 sec   (5129 perm/sec)   p_kst 1.281000e-01   p_cons 4.297000e-01   p_joint 1.739000e-01

Joint ci ratio: 6.261571e-02	ci left: 1.586950e-01	ci right 1.690029e-01	k: 3276	n:20000
Cons ci ratio: 3.213294e-02	ci left: 4.197316e-01	ci right 4.334897e-01	k: 8532	n:20000
KS ci ratio: 7.131177e-02	ci left: 1.265498e-01	ci right 1.359577e-01	k: 2624	n:20000
NOVA1   20000 perm   4 sec   (4582 perm/sec)   p_kst 1.312000e-01   p_cons 4.266000e-01   p_joint 1.638000e-01

Outputting figure to mutsig2_images.part000000000116/NOVA1.11_1575_20000_0.1312_0.4266_0.1638.png
                gene_name: NOVA1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 8 percent done.
NPFFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
NPFFR2   10000 perm   2 sec   (4983 perm/sec)   p_kst 4.239000e-01   p_cons 3.949000e-01   p_joint 4.465000e-01

Outputting figure to mutsig2_images.part000000000116/NPFFR2.11_1591_10000_0.4239_0.3949_0.4465.png
                gene_name: NPFFR2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
NPAS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
NPAS4   10000 perm   2 sec   (5102 perm/sec)   p_kst 6.773000e-01   p_cons 1.951000e-01   p_joint 5.193000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS4.10_2441_10000_0.6773_0.1951_0.5193.png
                gene_name: NPAS4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 11 percent done.
NPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
NPHS1   10000 perm   2 sec   (4659 perm/sec)   p_kst 4.815000e-01   p_cons 1.763000e-01   p_joint 3.565000e-01

Outputting figure to mutsig2_images.part000000000116/NPHS1.10_3842_10000_0.4815_0.1763_0.3565.png
                gene_name: NPHS1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 12 percent done.
NPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
Cons ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
NPR3   10000 perm   2 sec   (5164 perm/sec)   p_kst 2.218000e-01   p_cons 4.166000e-01   p_joint 4.757000e-01

Outputting figure to mutsig2_images.part000000000116/NPR3.10_1655_10000_0.2218_0.4166_0.4757.png
                gene_name: NPR3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
NOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
Cons ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
NOS1   10000 perm   2 sec   (4755 perm/sec)   p_kst 7.280000e-02   p_cons 9.544000e-01   p_joint 1.756000e-01

Joint ci ratio: 6.683640e-02	ci left: 1.418232e-01	ci right 1.516797e-01	k: 2934	n:20000
Cons ci ratio: 6.033651e-03	ci left: 9.518291e-01	ci right 9.576378e-01	k: 19096	n:20000
KS ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
NOS1   20000 perm   5 sec   (4288 perm/sec)   p_kst 7.340000e-02   p_cons 9.548000e-01   p_joint 1.467000e-01

Outputting figure to mutsig2_images.part000000000116/NOS1.9_4417_20000_0.0734_0.9548_0.1467.png
                gene_name: NOS1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 15 percent done.
NPSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
Cons ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
NPSR1   10000 perm   2 sec   (5530 perm/sec)   p_kst 2.844000e-01   p_cons 3.315000e-01   p_joint 4.149000e-01

Outputting figure to mutsig2_images.part000000000116/NPSR1.9_1265_10000_0.2844_0.3315_0.4149.png
                gene_name: NPSR1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
NPY1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
NPY1R   10000 perm   2 sec   (5334 perm/sec)   p_kst 4.785000e-01   p_cons 9.480000e-01   p_joint 6.717000e-01

Outputting figure to mutsig2_images.part000000000116/NPY1R.9_1163_10000_0.4785_0.948_0.6717.png
                gene_name: NPY1R
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 18 percent done.
NPY5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
Cons ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
NPY5R   10000 perm   2 sec   (5888 perm/sec)   p_kst 4.791000e-01   p_cons 6.191000e-01   p_joint 8.599000e-01

Outputting figure to mutsig2_images.part000000000116/NPY5R.9_1342_10000_0.4791_0.6191_0.8599.png
                gene_name: NPY5R
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 20 percent done.
NOTCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
NOTCH1   10000 perm   3 sec   (3571 perm/sec)   p_kst 4.395000e-01   p_cons 8.900000e-03   p_joint 6.720000e-02

Joint ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
Cons ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
KS ci ratio: 3.149109e-02	ci left: 4.296112e-01	ci right 4.434072e-01	k: 8730	n:20000
NOTCH1   20000 perm   6 sec   (3293 perm/sec)   p_kst 4.365000e-01   p_cons 8.800000e-03   p_joint 4.410000e-02

Joint ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
Cons ci ratio: 2.248050e-01	ci left: 8.905068e-03	ci right 1.119132e-02	k: 300	n:30000
KS ci ratio: 2.564703e-02	ci left: 4.321423e-01	ci right 4.434031e-01	k: 13133	n:30000
NOTCH1   30000 perm   9 sec   (3188 perm/sec)   p_kst 4.377667e-01   p_cons 1.000000e-02   p_joint 3.850000e-02

Joint ci ratio: 9.224012e-02	ci left: 4.120390e-02	ci right 4.521275e-02	k: 1727	n:40000
Cons ci ratio: 1.965093e-01	ci left: 8.881628e-03	ci right 1.084051e-02	k: 393	n:40000
KS ci ratio: 2.213888e-02	ci left: 4.345033e-01	ci right 4.442555e-01	k: 17575	n:40000
NOTCH1   40000 perm   13 sec   (3120 perm/sec)   p_kst 4.393750e-01   p_cons 9.825000e-03   p_joint 4.317500e-02

Joint ci ratio: 8.893735e-02	ci left: 3.573422e-02	ci right 3.907976e-02	k: 1869	n:50000
Cons ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
KS ci ratio: 1.962095e-02	ci left: 4.395384e-01	ci right 4.482681e-01	k: 22195	n:50000
NOTCH1   50000 perm   16 sec   (3068 perm/sec)   p_kst 4.439000e-01   p_cons 9.960000e-03   p_joint 3.738000e-02

Joint ci ratio: 9.125976e-02	ci left: 2.847020e-02	ci right 3.120886e-02	k: 1789	n:60000
Cons ci ratio: 1.659240e-01	ci left: 8.451539e-03	ci right 9.996492e-03	k: 552	n:60000
KS ci ratio: 1.780486e-02	ci left: 4.428662e-01	ci right 4.508389e-01	k: 26811	n:60000
NOTCH1   60000 perm   20 sec   (3020 perm/sec)   p_kst 4.468500e-01   p_cons 9.200000e-03   p_joint 2.981667e-02

Joint ci ratio: 7.326794e-02	ci left: 3.784449e-02	ci right 4.073672e-02	k: 2749	n:70000
Cons ci ratio: 1.537564e-01	ci left: 8.492248e-03	ci right 9.920309e-03	k: 643	n:70000
KS ci ratio: 1.650920e-02	ci left: 4.424128e-01	ci right 4.497917e-01	k: 31227	n:70000
NOTCH1   70000 perm   24 sec   (2979 perm/sec)   p_kst 4.461000e-01   p_cons 9.185714e-03   p_joint 3.927143e-02

Joint ci ratio: 7.278612e-02	ci left: 3.371257e-02	ci right 3.627130e-02	k: 2798	n:80000
Cons ci ratio: 1.445213e-01	ci left: 8.453581e-03	ci right 9.782384e-03	k: 728	n:80000
KS ci ratio: 1.546097e-02	ci left: 4.420766e-01	ci right 4.489773e-01	k: 35642	n:80000
NOTCH1   80000 perm   27 sec   (2940 perm/sec)   p_kst 4.455250e-01   p_cons 9.100000e-03   p_joint 3.497500e-02

Joint ci ratio: 6.333793e-02	ci left: 3.952776e-02	ci right 4.212416e-02	k: 3673	n:90000
Cons ci ratio: 1.367724e-01	ci left: 8.425512e-03	ci right 9.673107e-03	k: 813	n:90000
KS ci ratio: 1.457129e-02	ci left: 4.424601e-01	ci right 4.489657e-01	k: 40114	n:90000
NOTCH1   90000 perm   31 sec   (2903 perm/sec)   p_kst 4.457111e-01   p_cons 9.033333e-03   p_joint 4.081111e-02

Joint ci ratio: 6.256768e-02	ci left: 3.658700e-02	ci right 3.895991e-02	k: 3776	n:100000
Cons ci ratio: 1.283607e-01	ci left: 8.646568e-03	ci right 9.842157e-03	k: 923	n:100000
KS ci ratio: 1.382387e-02	ci left: 4.426160e-01	ci right 4.487872e-01	k: 44570	n:100000
NOTCH1   100000 perm   35 sec   (2867 perm/sec)   p_kst 4.457000e-01   p_cons 9.230000e-03   p_joint 3.776000e-02

Joint ci ratio: 6.135421e-02	ci left: 3.468290e-02	ci right 3.688712e-02	k: 3935	n:110000
Cons ci ratio: 1.229624e-01	ci left: 8.591332e-03	ci right 9.725683e-03	k: 1006	n:110000
KS ci ratio: 1.318202e-02	ci left: 4.427051e-01	ci right 4.485886e-01	k: 49021	n:110000
NOTCH1   110000 perm   39 sec   (2835 perm/sec)   p_kst 4.456455e-01   p_cons 9.145455e-03   p_joint 3.577273e-02

Joint ci ratio: 6.120028e-02	ci left: 3.204568e-02	ci right 3.407697e-02	k: 3966	n:120000
Cons ci ratio: 1.178655e-01	ci left: 8.594721e-03	ci right 9.679201e-03	k: 1095	n:120000
KS ci ratio: 1.261987e-02	ci left: 4.428683e-01	ci right 4.485010e-01	k: 53482	n:120000
NOTCH1   120000 perm   43 sec   (2803 perm/sec)   p_kst 4.456833e-01   p_cons 9.125000e-03   p_joint 3.305000e-02

Joint ci ratio: 5.776873e-02	ci left: 3.321861e-02	ci right 3.520224e-02	k: 4446	n:130000
Cons ci ratio: 1.213018e-01	ci left: 7.485590e-03	ci right 8.459626e-03	k: 1035	n:130000
KS ci ratio: 1.213081e-02	ci left: 4.427341e-01	ci right 4.481452e-01	k: 57907	n:130000
NOTCH1   130000 perm   47 sec   (2773 perm/sec)   p_kst 4.454385e-01   p_cons 7.961538e-03   p_joint 3.420000e-02

Joint ci ratio: 5.737702e-02	ci left: 3.133777e-02	ci right 3.319596e-02	k: 4516	n:140000
Cons ci ratio: 1.169788e-01	ci left: 7.491448e-03	ci right 8.429103e-03	k: 1113	n:140000
KS ci ratio: 1.170484e-02	ci left: 4.421874e-01	ci right 4.474006e-01	k: 62271	n:140000
NOTCH1   140000 perm   51 sec   (2749 perm/sec)   p_kst 4.447929e-01   p_cons 7.950000e-03   p_joint 3.225714e-02

Joint ci ratio: 5.262345e-02	ci left: 3.473379e-02	ci right 3.661755e-02	k: 5350	n:150000
Cons ci ratio: 1.011156e-01	ci left: 9.418131e-03	ci right 1.042761e-02	k: 1487	n:150000
KS ci ratio: 1.131863e-02	ci left: 4.418099e-01	ci right 4.468456e-01	k: 66649	n:150000
NOTCH1   150000 perm   55 sec   (2720 perm/sec)   p_kst 4.443267e-01   p_cons 9.913333e-03   p_joint 3.566667e-02

Joint ci ratio: 4.961883e-02	ci left: 3.661141e-02	ci right 3.848039e-02	k: 6006	n:160000
Cons ci ratio: 9.816124e-02	ci left: 9.384067e-03	ci right 1.035882e-02	k: 1578	n:160000
KS ci ratio: 1.096454e-02	ci left: 4.416508e-01	ci right 4.465262e-01	k: 71054	n:160000
NOTCH1   160000 perm   59 sec   (2692 perm/sec)   p_kst 4.440875e-01   p_cons 9.862500e-03   p_joint 3.753750e-02

Outputting figure to mutsig2_images.part000000000116/NOTCH1.8_7804_160000_0.44409_0.0098625_0.037538.png
                gene_name: NOTCH1
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0094 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.038 

Current progress: 22 percent done.
NPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
Cons ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
NPAT   10000 perm   2 sec   (4647 perm/sec)   p_kst 2.446000e-01   p_cons 6.661000e-01   p_joint 3.814000e-01

Outputting figure to mutsig2_images.part000000000116/NPAT.8_4356_10000_0.2446_0.6661_0.3814.png
                gene_name: NPAT
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 23 percent done.
NOMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
NOMO1   10000 perm   2 sec   (4782 perm/sec)   p_kst 1.800000e-01   p_cons 2.257000e-01   p_joint 1.903000e-01

Outputting figure to mutsig2_images.part000000000116/NOMO1.7_3793_10000_0.18_0.2257_0.1903.png
                gene_name: NOMO1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 25 percent done.
NOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
Cons ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
KS ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
NOX5   10000 perm   2 sec   (5163 perm/sec)   p_kst 2.495000e-01   p_cons 4.009000e-01   p_joint 3.129000e-01

Outputting figure to mutsig2_images.part000000000116/NOX5.7_2395_10000_0.2495_0.4009_0.3129.png
                gene_name: NOX5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
NOL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
Cons ci ratio: 2.095216e-02	ci left: 7.695217e-01	ci right 7.859162e-01	k: 7778	n:10000
KS ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
NOL4   10000 perm   2 sec   (5330 perm/sec)   p_kst 7.500000e-02   p_cons 7.778000e-01   p_joint 1.445000e-01

Joint ci ratio: 6.912998e-02	ci left: 1.336913e-01	ci right 1.433141e-01	k: 2769	n:20000
Cons ci ratio: 1.484104e-02	ci left: 7.713678e-01	ci right 7.829515e-01	k: 15544	n:20000
KS ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
NOL4   20000 perm   4 sec   (4762 perm/sec)   p_kst 8.205000e-02   p_cons 7.772000e-01   p_joint 1.384500e-01

Outputting figure to mutsig2_images.part000000000116/NOL4.6_1961_20000_0.08205_0.7772_0.13845.png
                gene_name: NOL4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 28 percent done.
NOL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
KS ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
NOL6   10000 perm   2 sec   (4856 perm/sec)   p_kst 7.972000e-01   p_cons 9.800000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOL6.6_3545_10000_0.7972_0.98_1.png
                gene_name: NOL6
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
NOTCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
NOTCH3   10000 perm   2 sec   (4023 perm/sec)   p_kst 1.959000e-01   p_cons 7.807000e-01   p_joint 3.481000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH3.6_7098_10000_0.1959_0.7807_0.3481.png
                gene_name: NOTCH3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
NPAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
Cons ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
KS ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
NPAS3   10000 perm   2 sec   (5603 perm/sec)   p_kst 3.684000e-01   p_cons 3.376000e-01   p_joint 5.028000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS3.6_2905_10000_0.3684_0.3376_0.5028.png
                gene_name: NPAS3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 32 percent done.
NPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
Cons ci ratio: 5.724836e-02	ci left: 3.099678e-01	ci right 3.283376e-01	k: 3191	n:10000
KS ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
NPC1   10000 perm   2 sec   (4979 perm/sec)   p_kst 5.548000e-01   p_cons 3.191000e-01   p_joint 5.664000e-01

Outputting figure to mutsig2_images.part000000000116/NPC1.6_3937_10000_0.5548_0.3191_0.5664.png
                gene_name: NPC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 34 percent done.
NPNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
Cons ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
KS ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
NPNT   10000 perm   2 sec   (5837 perm/sec)   p_kst 1.825000e-01   p_cons 7.300000e-01   p_joint 2.729000e-01

Outputting figure to mutsig2_images.part000000000116/NPNT.6_1895_10000_0.1825_0.73_0.2729.png
                gene_name: NPNT
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
NPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
Cons ci ratio: 1.037238e-03	ci left: 9.986945e-01	ci right 9.997798e-01	k: 9994	n:10000
KS ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
NPR1   10000 perm   2 sec   (5145 perm/sec)   p_kst 9.130000e-02   p_cons 9.994000e-01   p_joint 1.534000e-01

Joint ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
Cons ci ratio: 7.842157e-04	ci left: 9.987633e-01	ci right 9.995802e-01	k: 19985	n:20000
KS ci ratio: 8.668999e-02	ci left: 8.871513e-02	ci right 9.680371e-02	k: 1854	n:20000
NPR1   20000 perm   4 sec   (4632 perm/sec)   p_kst 9.270000e-02   p_cons 9.992500e-01   p_joint 1.733000e-01

Outputting figure to mutsig2_images.part000000000116/NPR1.6_3274_20000_0.0927_0.99925_0.1733.png
                gene_name: NPR1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 37 percent done.
NPY2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
NPY2R   10000 perm   2 sec   (5344 perm/sec)   p_kst 8.819000e-01   p_cons 8.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPY2R.6_1150_10000_0.8819_0.8895_1.png
                gene_name: NPY2R
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
NOP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
Cons ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
KS ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
NOP14   10000 perm   2 sec   (5064 perm/sec)   p_kst 3.650000e-02   p_cons 8.093000e-01   p_joint 9.760000e-02

Joint ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
Cons ci ratio: 1.359488e-02	ci left: 8.005515e-01	ci right 8.115594e-01	k: 16122	n:20000
KS ci ratio: 1.445823e-01	ci left: 3.288174e-02	ci right 3.805446e-02	k: 708	n:20000
NOP14   20000 perm   4 sec   (4545 perm/sec)   p_kst 3.540000e-02   p_cons 8.061000e-01   p_joint 8.015000e-02

Joint ci ratio: 7.761271e-02	ci left: 7.531708e-02	ci right 8.143153e-02	k: 2350	n:30000
Cons ci ratio: 1.159372e-02	ci left: 7.874967e-01	ci right 7.967133e-01	k: 23764	n:30000
KS ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
NOP14   30000 perm   7 sec   (4366 perm/sec)   p_kst 3.600000e-02   p_cons 7.921333e-01   p_joint 7.833333e-02

Joint ci ratio: 6.870850e-02	ci left: 7.265866e-02	ci right 7.785320e-02	k: 3009	n:40000
Cons ci ratio: 1.004526e-02	ci left: 7.879637e-01	ci right 7.959439e-01	k: 31679	n:40000
KS ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
NOP14   40000 perm   9 sec   (4225 perm/sec)   p_kst 3.565000e-02   p_cons 7.919750e-01   p_joint 7.522500e-02

Joint ci ratio: 6.495218e-02	ci left: 6.569033e-02	ci right 7.012000e-02	k: 3394	n:50000
Cons ci ratio: 8.807612e-03	ci left: 7.949165e-01	ci right 8.019688e-01	k: 39923	n:50000
KS ci ratio: 9.142981e-02	ci left: 3.383642e-02	ci right 3.709780e-02	k: 1772	n:50000
NOP14   50000 perm   12 sec   (4134 perm/sec)   p_kst 3.544000e-02   p_cons 7.984600e-01   p_joint 6.788000e-02

Outputting figure to mutsig2_images.part000000000116/NOP14.5_2646_50000_0.03544_0.79846_0.06788.png
                gene_name: NOP14
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 40 percent done.
NOVA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
NOVA2   10000 perm   2 sec   (5848 perm/sec)   p_kst 2.529000e-01   p_cons 3.399000e-01   p_joint 4.570000e-01

Outputting figure to mutsig2_images.part000000000116/NOVA2.5_1495_10000_0.2529_0.3399_0.457.png
                gene_name: NOVA2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 42 percent done.
NOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
KS ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
NOX3   10000 perm   2 sec   (5826 perm/sec)   p_kst 9.324000e-01   p_cons 8.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX3.5_1759_10000_0.9324_0.8375_1.png
                gene_name: NOX3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
NPHP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
Cons ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
KS ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
NPHP1   10000 perm   2 sec   (5435 perm/sec)   p_kst 1.616000e-01   p_cons 3.086000e-01   p_joint 2.438000e-01

Outputting figure to mutsig2_images.part000000000116/NPHP1.5_2282_10000_0.1616_0.3086_0.2438.png
                gene_name: NPHP1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
NPHP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
KS ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
NPHP4   10000 perm   2 sec   (4868 perm/sec)   p_kst 7.375000e-01   p_cons 7.511000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPHP4.5_4397_10000_0.7375_0.7511_1.png
                gene_name: NPHP4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
NR0B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 3.789885e-02	ci left: 5.069520e-01	ci right 5.266382e-01	k: 5168	n:10000
NR0B1   10000 perm   2 sec   (5828 perm/sec)   p_kst 5.168000e-01   p_cons 6.370000e-01   p_joint 6.566000e-01

Outputting figure to mutsig2_images.part000000000116/NR0B1.5_1421_10000_0.5168_0.637_0.6566.png
                gene_name: NR0B1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 48 percent done.
NOL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
KS ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
NOL9   10000 perm   2 sec   (5591 perm/sec)   p_kst 7.267000e-01   p_cons 8.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOL9.4_2157_10000_0.7267_0.8847_1.png
                gene_name: NOL9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
NOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
NOM1   10000 perm   2 sec   (5405 perm/sec)   p_kst 7.700000e-01   p_cons 1.519000e-01   p_joint 4.279000e-01

Outputting figure to mutsig2_images.part000000000116/NOM1.4_2627_10000_0.77_0.1519_0.4279.png
                gene_name: NOM1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 51 percent done.
NOP56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
KS ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
NOP56   10000 perm   2 sec   (5436 perm/sec)   p_kst 1.980000e-01   p_cons 1.619000e-01   p_joint 2.371000e-01

Outputting figure to mutsig2_images.part000000000116/NOP56.4_1833_10000_0.198_0.1619_0.2371.png
                gene_name: NOP56
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 52 percent done.
NOS1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
KS ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
NOS1AP   10000 perm   2 sec   (5693 perm/sec)   p_kst 6.341000e-01   p_cons 3.555000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000116/NOS1AP.4_1615_10000_0.6341_0.3555_0.7229.png
                gene_name: NOS1AP
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 54 percent done.
NOX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
Cons ci ratio: 2.094004e-02	ci left: 7.697242e-01	ci right 7.861136e-01	k: 7780	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
NOX4   10000 perm   2 sec   (6151 perm/sec)   p_kst 1.750000e-01   p_cons 7.780000e-01   p_joint 3.525000e-01

Outputting figure to mutsig2_images.part000000000116/NOX4.4_1809_10000_0.175_0.778_0.3525.png
                gene_name: NOX4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 55 percent done.
NPBWR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
Cons ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
KS ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
NPBWR1   10000 perm   2 sec   (6358 perm/sec)   p_kst 1.231000e-01   p_cons 2.390000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
Cons ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
KS ci ratio: 7.403058e-02	ci left: 1.183798e-01	ci right 1.275301e-01	k: 2458	n:20000
NPBWR1   20000 perm   4 sec   (5676 perm/sec)   p_kst 1.229000e-01   p_cons 2.450000e-02   p_joint 3.765000e-02

Joint ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
Cons ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
KS ci ratio: 6.047880e-02	ci left: 1.191060e-01	ci right 1.265672e-01	k: 3684	n:30000
NPBWR1   30000 perm   6 sec   (5397 perm/sec)   p_kst 1.228000e-01   p_cons 2.443333e-02   p_joint 3.490000e-02

Joint ci ratio: 1.163915e-01	ci left: 2.596784e-02	ci right 2.920123e-02	k: 1102	n:40000
Cons ci ratio: 1.185076e-01	ci left: 2.504504e-02	ci right 2.822419e-02	k: 1064	n:40000
KS ci ratio: 5.275857e-02	ci left: 1.180662e-01	ci right 1.244889e-01	k: 4850	n:40000
NPBWR1   40000 perm   8 sec   (5222 perm/sec)   p_kst 1.212500e-01   p_cons 2.660000e-02   p_joint 2.755000e-02

Joint ci ratio: 7.739683e-02	ci left: 4.690814e-02	ci right 5.070446e-02	k: 2439	n:50000
Cons ci ratio: 1.059252e-01	ci left: 2.524608e-02	ci right 2.808924e-02	k: 1332	n:50000
KS ci ratio: 4.715671e-02	ci left: 1.185494e-01	ci right 1.242946e-01	k: 6070	n:50000
NPBWR1   50000 perm   10 sec   (5066 perm/sec)   p_kst 1.214000e-01   p_cons 2.664000e-02   p_joint 4.878000e-02

Joint ci ratio: 9.094602e-02	ci left: 2.866578e-02	ci right 3.141326e-02	k: 1801	n:60000
Cons ci ratio: 9.759625e-02	ci left: 2.490400e-02	ci right 2.747544e-02	k: 1570	n:60000
KS ci ratio: 4.301847e-02	ci left: 1.189454e-01	ci right 1.241913e-01	k: 7293	n:60000
NPBWR1   60000 perm   12 sec   (4938 perm/sec)   p_kst 1.215500e-01   p_cons 2.616667e-02   p_joint 3.001667e-02

Outputting figure to mutsig2_images.part000000000116/NPBWR1.4_990_60000_0.12155_0.026167_0.030017.png
                gene_name: NPBWR1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 57 percent done.
NPHS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
NPHS2   10000 perm   2 sec   (5924 perm/sec)   p_kst 7.563000e-01   p_cons 6.511000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPHS2.4_1184_10000_0.7563_0.6511_1.png
                gene_name: NPHS2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
NPLOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
KS ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
NPLOC4   10000 perm   2 sec   (5733 perm/sec)   p_kst 1.422000e-01   p_cons 7.317000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000116/NPLOC4.4_1895_10000_0.1422_0.7317_0.2976.png
                gene_name: NPLOC4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 60 percent done.
NOP16
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 62 percent done.
NOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
NOP2   10000 perm   2 sec   (5822 perm/sec)   p_kst 9.188000e-01   p_cons 2.824000e-01   p_joint 6.751000e-01

Outputting figure to mutsig2_images.part000000000116/NOP2.3_2487_10000_0.9188_0.2824_0.6751.png
                gene_name: NOP2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 63 percent done.
NOTCH2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
Cons ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
KS ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
NOTCH2NL   10000 perm   2 sec   (6538 perm/sec)   p_kst 3.818000e-01   p_cons 7.475000e-01   p_joint 6.083000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2NL.3_727_10000_0.3818_0.7475_0.6083.png
                gene_name: NOTCH2NL
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 65 percent done.
NOV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
KS ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
NOV   10000 perm   2 sec   (6434 perm/sec)   p_kst 6.766000e-01   p_cons 6.330000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOV.3_1094_10000_0.6766_0.633_1.png
                gene_name: NOV
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
NOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
KS ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
NOX1   10000 perm   2 sec   (5784 perm/sec)   p_kst 5.704000e-01   p_cons 7.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX1.3_1747_10000_0.5704_0.76_1.png
                gene_name: NOX1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
NPEPPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
Cons ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
NPEPPS   10000 perm   2 sec   (5429 perm/sec)   p_kst 7.410000e-02   p_cons 3.369000e-01   p_joint 1.170000e-01

Joint ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
Cons ci ratio: 3.876166e-02	ci left: 3.317417e-01	ci right 3.449053e-01	k: 6766	n:20000
KS ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
NPEPPS   20000 perm   4 sec   (4812 perm/sec)   p_kst 7.515000e-02   p_cons 3.383000e-01   p_joint 1.090500e-01

Outputting figure to mutsig2_images.part000000000116/NPEPPS.3_2852_20000_0.07515_0.3383_0.10905.png
                gene_name: NPEPPS
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 69 percent done.
NPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
Cons ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
KS ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
NPL   10000 perm   2 sec   (6247 perm/sec)   p_kst 2.531000e-01   p_cons 6.744000e-01   p_joint 3.667000e-01

Outputting figure to mutsig2_images.part000000000116/NPL.3_1007_10000_0.2531_0.6744_0.3667.png
                gene_name: NPL
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 71 percent done.
NPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
Cons ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
KS ci ratio: 2.267398e-02	ci left: 7.406834e-01	ci right 7.577712e-01	k: 7493	n:10000
NPS   10000 perm   2 sec   (6086 perm/sec)   p_kst 7.493000e-01   p_cons 3.636000e-01   p_joint 9.231000e-01

Outputting figure to mutsig2_images.part000000000116/NPS.3_282_10000_0.7493_0.3636_0.9231.png
                gene_name: NPS
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 72 percent done.
NPTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
Cons ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
KS ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
NPTX2   10000 perm   2 sec   (6090 perm/sec)   p_kst 2.661000e-01   p_cons 6.070000e-02   p_joint 1.063000e-01

Joint ci ratio: 6.090124e-02	ci left: 1.663483e-01	ci right 1.768473e-01	k: 3431	n:20000
Cons ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
KS ci ratio: 4.605603e-02	ci left: 2.597367e-01	ci right 2.720315e-01	k: 5317	n:20000
NPTX2   20000 perm   4 sec   (5353 perm/sec)   p_kst 2.658500e-01   p_cons 6.945000e-02   p_joint 1.715500e-01

Joint ci ratio: 6.259873e-02	ci left: 1.119696e-01	ci right 1.192383e-01	k: 3467	n:30000
Cons ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
KS ci ratio: 3.775617e-02	ci left: 2.593165e-01	ci right 2.693292e-01	k: 7929	n:30000
NPTX2   30000 perm   6 sec   (5106 perm/sec)   p_kst 2.643000e-01   p_cons 6.966667e-02   p_joint 1.155667e-01

Outputting figure to mutsig2_images.part000000000116/NPTX2.3_1316_30000_0.2643_0.069667_0.11557.png
                gene_name: NPTX2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 74 percent done.
NQO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
NQO1   10000 perm   2 sec   (6529 perm/sec)   p_kst 2.796000e-01   p_cons 2.988000e-01   p_joint 3.865000e-01

Outputting figure to mutsig2_images.part000000000116/NQO1.3_849_10000_0.2796_0.2988_0.3865.png
                gene_name: NQO1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 75 percent done.
NOL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
Cons ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KS ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
NOL8   10000 perm   2 sec   (5349 perm/sec)   p_kst 8.565000e-01   p_cons 3.000000e-04   p_joint 3.720000e-02

Joint ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 1.141107e-02	ci left: 8.501450e-01	ci right 8.599515e-01	k: 17102	n:20000
NOL8   20000 perm   4 sec   (4904 perm/sec)   p_kst 8.551000e-01   p_cons 1.000000e-04   p_joint 4.500000e-04

Joint ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
Cons ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
KS ci ratio: 9.314383e-03	ci left: 8.511332e-01	ci right 8.591312e-01	k: 25655	n:30000
NOL8   30000 perm   6 sec   (4726 perm/sec)   p_kst 8.551667e-01   p_cons 1.333333e-04   p_joint 2.000000e-04

Joint ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
Cons ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
KS ci ratio: 8.127081e-03	ci left: 8.497946e-01	ci right 8.567540e-01	k: 34132	n:40000
NOL8   40000 perm   9 sec   (4594 perm/sec)   p_kst 8.533000e-01   p_cons 1.500000e-04   p_joint 6.500000e-04

Joint ci ratio: 5.144175e-01	ci left: 8.635357e-04	ci right 1.476753e-03	k: 57	n:50000
Cons ci ratio: 1.385805e+00	ci left: 5.628905e-05	ci right 2.884321e-04	k: 7	n:50000
KS ci ratio: 7.244050e-03	ci left: 8.510358e-01	ci right 8.572430e-01	k: 42708	n:50000
NOL8   50000 perm   11 sec   (4491 perm/sec)   p_kst 8.541600e-01   p_cons 1.400000e-04   p_joint 1.140000e-03

Joint ci ratio: 4.523559e-01	ci left: 9.685522e-04	ci right 1.548093e-03	k: 74	n:60000
Cons ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
KS ci ratio: 6.641402e-03	ci left: 8.502252e-01	ci right 8.559073e-01	k: 51185	n:60000
NOL8   60000 perm   14 sec   (4405 perm/sec)   p_kst 8.530833e-01   p_cons 1.666667e-04   p_joint 1.233333e-03

Joint ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
Cons ci ratio: 1.131501e+00	ci left: 7.844767e-05	ci right 2.811545e-04	k: 11	n:70000
KS ci ratio: 6.129732e-03	ci left: 8.512185e-01	ci right 8.564664e-01	k: 59770	n:70000
NOL8   70000 perm   16 sec   (4324 perm/sec)   p_kst 8.538571e-01   p_cons 1.571429e-04   p_joint 1.014286e-03

Joint ci ratio: 4.380474e-01	ci left: 7.818886e-04	ci right 1.230570e-03	k: 79	n:80000
Cons ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
KS ci ratio: 5.744898e-03	ci left: 8.509047e-01	ci right 8.558196e-01	k: 68270	n:80000
NOL8   80000 perm   19 sec   (4247 perm/sec)   p_kst 8.533750e-01   p_cons 1.375000e-04   p_joint 9.875000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
KS ci ratio: 5.410980e-03	ci left: 8.512959e-01	ci right 8.559257e-01	k: 76826	n:90000
NOL8   90000 perm   22 sec   (4176 perm/sec)   p_kst 8.536222e-01   p_cons 1.333333e-04   p_joint 6.444444e-04

Joint ci ratio: 5.017490e-01	ci left: 4.578935e-04	ci right 7.722524e-04	k: 60	n:100000
Cons ci ratio: 1.047585e+00	ci left: 6.922128e-05	ci right 2.222937e-04	k: 13	n:100000
KS ci ratio: 5.128620e-03	ci left: 8.516453e-01	ci right 8.560342e-01	k: 85385	n:100000
NOL8   100000 perm   24 sec   (4107 perm/sec)   p_kst 8.538500e-01   p_cons 1.300000e-04   p_joint 6.000000e-04

Joint ci ratio: 8.553286e-01	ci left: 1.110627e-04	ci right 2.807895e-04	k: 20	n:110000
Cons ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
KS ci ratio: 4.887893e-03	ci left: 8.518537e-01	ci right 8.560367e-01	k: 93935	n:110000
NOL8   110000 perm   27 sec   (4035 perm/sec)   p_kst 8.539545e-01   p_cons 1.272727e-04   p_joint 1.818182e-04

Joint ci ratio: 8.000833e-01	ci left: 1.215040e-04	ci right 2.875803e-04	k: 23	n:120000
Cons ci ratio: 9.799306e-01	ci left: 6.996318e-05	ci right 2.061601e-04	k: 15	n:120000
KS ci ratio: 4.672218e-03	ci left: 8.523498e-01	ci right 8.563497e-01	k: 102523	n:120000
NOL8   120000 perm   30 sec   (3968 perm/sec)   p_kst 8.543583e-01   p_cons 1.250000e-04   p_joint 1.916667e-04

Joint ci ratio: 7.839216e-01	ci left: 1.182900e-04	ci right 2.746807e-04	k: 24	n:130000
Cons ci ratio: 9.799359e-01	ci left: 6.458129e-05	ci right 1.903022e-04	k: 15	n:130000
KS ci ratio: 4.490386e-03	ci left: 8.523472e-01	ci right 8.561908e-01	k: 111056	n:130000
NOL8   130000 perm   33 sec   (3905 perm/sec)   p_kst 8.542769e-01   p_cons 1.153846e-04   p_joint 1.846154e-04

Joint ci ratio: 4.020456e-01	ci left: 5.426157e-04	ci right 8.215968e-04	k: 94	n:140000
Cons ci ratio: 9.506785e-01	ci left: 6.532553e-05	ci right 1.855862e-04	k: 16	n:140000
KS ci ratio: 4.321177e-03	ci left: 8.527570e-01	ci right 8.564569e-01	k: 119646	n:140000
NOL8   140000 perm   36 sec   (3849 perm/sec)   p_kst 8.546143e-01   p_cons 1.142857e-04   p_joint 6.714286e-04

Joint ci ratio: 3.861152e-01	ci left: 5.544917e-04	ci right 8.254136e-04	k: 102	n:150000
Cons ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
KS ci ratio: 4.175339e-03	ci left: 8.527791e-01	ci right 8.563538e-01	k: 128186	n:150000
NOL8   150000 perm   40 sec   (3796 perm/sec)   p_kst 8.545733e-01   p_cons 1.133333e-04   p_joint 6.800000e-04

Joint ci ratio: 2.812680e-01	ci left: 1.042148e-03	ci right 1.388833e-03	k: 193	n:160000
Cons ci ratio: 8.764811e-01	ci left: 7.149672e-05	ci right 1.854367e-04	k: 19	n:160000
KS ci ratio: 4.041912e-03	ci left: 8.528883e-01	ci right 8.563488e-01	k: 136740	n:160000
NOL8   160000 perm   43 sec   (3741 perm/sec)   p_kst 8.546250e-01   p_cons 1.187500e-04   p_joint 1.206250e-03

Joint ci ratio: 2.777179e-01	ci left: 1.008193e-03	ci right 1.338609e-03	k: 198	n:170000
Cons ci ratio: 8.764845e-01	ci left: 6.729095e-05	ci right 1.745290e-04	k: 19	n:170000
KS ci ratio: 3.922087e-03	ci left: 8.528858e-01	ci right 8.562433e-01	k: 145277	n:170000
NOL8   170000 perm   46 sec   (3691 perm/sec)   p_kst 8.545706e-01   p_cons 1.117647e-04   p_joint 1.164706e-03

Joint ci ratio: 3.806309e-01	ci left: 4.771329e-04	ci right 7.061172e-04	k: 105	n:180000
Cons ci ratio: 8.001111e-01	ci left: 8.100182e-05	ci right 1.917233e-04	k: 23	n:180000
KS ci ratio: 3.815560e-03	ci left: 8.526728e-01	ci right 8.559380e-01	k: 153776	n:180000
NOL8   180000 perm   50 sec   (3633 perm/sec)   p_kst 8.543111e-01   p_cons 1.277778e-04   p_joint 5.833333e-04

Joint ci ratio: 3.719603e-01	ci left: 4.758476e-04	ci right 6.977467e-04	k: 110	n:190000
Cons ci ratio: 8.001140e-01	ci left: 7.673848e-05	ci right 1.816329e-04	k: 23	n:190000
KS ci ratio: 3.710973e-03	ci left: 8.529065e-01	ci right 8.560827e-01	k: 162355	n:190000
NOL8   190000 perm   53 sec   (3586 perm/sec)   p_kst 8.545000e-01   p_cons 1.210526e-04   p_joint 5.789474e-04

Joint ci ratio: 3.824514e-01	ci left: 4.248968e-04	ci right 6.300324e-04	k: 104	n:200000
Cons ci ratio: 7.839490e-01	ci left: 7.688773e-05	ci right 1.785453e-04	k: 24	n:200000
KS ci ratio: 3.616644e-03	ci left: 8.529721e-01	ci right 8.560676e-01	k: 170905	n:200000
NOL8   200000 perm   57 sec   (3539 perm/sec)   p_kst 8.545250e-01   p_cons 1.200000e-04   p_joint 5.200000e-04

Joint ci ratio: 3.719707e-01	ci left: 4.305268e-04	ci right 6.312982e-04	k: 110	n:210000
Cons ci ratio: 7.687258e-01	ci left: 7.704278e-05	ci right 1.757328e-04	k: 25	n:210000
KS ci ratio: 3.527471e-03	ci left: 8.531520e-01	ci right 8.561715e-01	k: 179480	n:210000
NOL8   210000 perm   60 sec   (3491 perm/sec)   p_kst 8.546667e-01   p_cons 1.190476e-04   p_joint 5.238095e-04

Joint ci ratio: 3.577470e-01	ci left: 4.481181e-04	ci right 6.472439e-04	k: 119	n:220000
Cons ci ratio: 7.407615e-01	ci left: 8.087955e-05	ci right 1.785568e-04	k: 27	n:220000
KS ci ratio: 3.444266e-03	ci left: 8.533392e-01	ci right 8.562878e-01	k: 188060	n:220000
NOL8   220000 perm   64 sec   (3446 perm/sec)   p_kst 8.548182e-01   p_cons 1.227273e-04   p_joint 5.409091e-04

Joint ci ratio: 3.548052e-01	ci left: 4.365516e-04	ci right 6.285746e-04	k: 121	n:230000
Cons ci ratio: 7.407637e-01	ci left: 7.736299e-05	ci right 1.707936e-04	k: 27	n:230000
KS ci ratio: 3.369748e-03	ci left: 8.532837e-01	ci right 8.561682e-01	k: 196588	n:230000
NOL8   230000 perm   68 sec   (3400 perm/sec)   p_kst 8.547304e-01   p_cons 1.173913e-04   p_joint 5.260870e-04

Joint ci ratio: 3.372843e-01	ci left: 4.678254e-04	ci right 6.612351e-04	k: 134	n:240000
Cons ci ratio: 7.156446e-01	ci left: 8.092543e-05	ci right 1.735322e-04	k: 29	n:240000
KS ci ratio: 3.294496e-03	ci left: 8.536393e-01	ci right 8.564604e-01	k: 205213	n:240000
NOL8   240000 perm   72 sec   (3356 perm/sec)   p_kst 8.550542e-01   p_cons 1.208333e-04   p_joint 5.583333e-04

Joint ci ratio: 3.288650e-01	ci left: 4.747716e-04	ci right 6.651181e-04	k: 141	n:250000
Cons ci ratio: 7.156464e-01	ci left: 7.768835e-05	ci right 1.665911e-04	k: 29	n:250000
KS ci ratio: 3.223741e-03	ci left: 8.539912e-01	ci right 8.567526e-01	k: 213844	n:250000
NOL8   250000 perm   75 sec   (3313 perm/sec)   p_kst 8.553760e-01   p_cons 1.160000e-04   p_joint 5.640000e-04

Joint ci ratio: 2.345579e-01	ci left: 9.472794e-04	ci right 1.202514e-03	k: 278	n:260000
Cons ci ratio: 6.722292e-01	ci left: 8.736957e-05	ci right 1.782426e-04	k: 33	n:260000
KS ci ratio: 3.165154e-03	ci left: 8.537025e-01	ci right 8.564127e-01	k: 222316	n:260000
NOL8   260000 perm   79 sec   (3272 perm/sec)   p_kst 8.550615e-01   p_cons 1.269231e-04   p_joint 1.069231e-03

Joint ci ratio: 3.157919e-01	ci left: 4.804538e-04	ci right 6.638765e-04	k: 153	n:270000
Cons ci ratio: 6.625568e-01	ci left: 8.720889e-05	ci right 1.759645e-04	k: 34	n:270000
KS ci ratio: 3.106479e-03	ci left: 8.536885e-01	ci right 8.563483e-01	k: 230856	n:270000
NOL8   270000 perm   84 sec   (3232 perm/sec)   p_kst 8.550222e-01   p_cons 1.259259e-04   p_joint 5.666667e-04

Joint ci ratio: 2.265780e-01	ci left: 9.469205e-04	ci right 1.192166e-03	k: 298	n:280000
Cons ci ratio: 6.358637e-01	ci left: 9.304242e-05	ci right 1.821370e-04	k: 37	n:280000
KS ci ratio: 3.052312e-03	ci left: 8.535649e-01	ci right 8.561778e-01	k: 239365	n:280000
NOL8   280000 perm   88 sec   (3191 perm/sec)   p_kst 8.548750e-01   p_cons 1.321429e-04   p_joint 1.064286e-03

Joint ci ratio: 2.225216e-01	ci left: 9.500660e-04	ci right 1.191118e-03	k: 309	n:290000
Cons ci ratio: 6.358652e-01	ci left: 8.983400e-05	ci right 1.758565e-04	k: 37	n:290000
KS ci ratio: 2.999714e-03	ci left: 8.535471e-01	ci right 8.561148e-01	k: 247902	n:290000
NOL8   290000 perm   92 sec   (3154 perm/sec)   p_kst 8.548345e-01   p_cons 1.275862e-04   p_joint 1.065517e-03

Joint ci ratio: 2.173243e-01	ci left: 9.656441e-04	ci right 1.204162e-03	k: 324	n:300000
Cons ci ratio: 6.121583e-01	ci left: 9.525694e-05	ci right 1.815578e-04	k: 40	n:300000
KS ci ratio: 2.950536e-03	ci left: 8.534640e-01	ci right 8.559892e-01	k: 256419	n:300000
NOL8   300000 perm   96 sec   (3117 perm/sec)   p_kst 8.547300e-01   p_cons 1.333333e-04   p_joint 1.080000e-03

Joint ci ratio: 2.131033e-01	ci left: 9.741701e-04	ci right 1.209510e-03	k: 337	n:310000
Cons ci ratio: 5.977520e-01	ci left: 9.764655e-05	ci right 1.831305e-04	k: 42	n:310000
KS ci ratio: 2.902040e-03	ci left: 8.535290e-01	ci right 8.560128e-01	k: 264980	n:310000
NOL8   310000 perm   101 sec   (3081 perm/sec)   p_kst 8.547742e-01   p_cons 1.354839e-04   p_joint 1.087097e-03

Joint ci ratio: 1.842507e-01	ci left: 1.282366e-03	ci right 1.545546e-03	k: 451	n:320000
Cons ci ratio: 5.779300e-01	ci left: 1.025746e-04	ci right 1.881628e-04	k: 45	n:320000
KS ci ratio: 2.857224e-03	ci left: 8.534711e-01	ci right 8.559162e-01	k: 273503	n:320000
NOL8   320000 perm   105 sec   (3045 perm/sec)   p_kst 8.546969e-01   p_cons 1.406250e-04   p_joint 1.409375e-03

Joint ci ratio: 1.871802e-01	ci left: 1.203050e-03	ci right 1.454323e-03	k: 437	n:330000
Cons ci ratio: 5.779313e-01	ci left: 9.946626e-05	ci right 1.824611e-04	k: 45	n:330000
KS ci ratio: 2.811779e-03	ci left: 8.536511e-01	ci right 8.560578e-01	k: 282103	n:330000
NOL8   330000 perm   110 sec   (3010 perm/sec)   p_kst 8.548576e-01   p_cons 1.363636e-04   p_joint 1.324242e-03

Joint ci ratio: 1.787961e-01	ci left: 1.285545e-03	ci right 1.540721e-03	k: 479	n:340000
Cons ci ratio: 5.657625e-01	ci left: 1.015718e-04	ci right 1.838194e-04	k: 47	n:340000
KS ci ratio: 2.770008e-03	ci left: 8.536792e-01	ci right 8.560501e-01	k: 290655	n:340000
NOL8   340000 perm   114 sec   (2974 perm/sec)   p_kst 8.548676e-01   p_cons 1.382353e-04   p_joint 1.408824e-03

Joint ci ratio: 1.760660e-01	ci left: 1.289769e-03	ci right 1.541459e-03	k: 494	n:350000
Cons ci ratio: 5.599600e-01	ci left: 1.011200e-04	ci right 1.818275e-04	k: 48	n:350000
KS ci ratio: 2.729039e-03	ci left: 8.537976e-01	ci right 8.561337e-01	k: 299239	n:350000
NOL8   350000 perm   119 sec   (2939 perm/sec)   p_kst 8.549686e-01   p_cons 1.371429e-04   p_joint 1.411429e-03

Joint ci ratio: 1.736278e-01	ci left: 1.291129e-03	ci right 1.539230e-03	k: 508	n:360000
Cons ci ratio: 5.488701e-01	ci left: 1.030877e-04	ci right 1.831036e-04	k: 50	n:360000
KS ci ratio: 2.690226e-03	ci left: 8.538734e-01	ci right 8.561764e-01	k: 307810	n:360000
NOL8   360000 perm   124 sec   (2904 perm/sec)   p_kst 8.550278e-01   p_cons 1.388889e-04   p_joint 1.411111e-03

Joint ci ratio: 1.709612e-01	ci left: 1.297613e-03	ci right 1.542735e-03	k: 524	n:370000
Cons ci ratio: 5.384141e-01	ci left: 1.049641e-04	ci right 1.842962e-04	k: 52	n:370000
KS ci ratio: 2.653196e-03	ci left: 8.539291e-01	ci right 8.562004e-01	k: 316375	n:370000
NOL8   370000 perm   129 sec   (2871 perm/sec)   p_kst 8.550676e-01   p_cons 1.405405e-04   p_joint 1.416216e-03

Joint ci ratio: 1.690407e-01	ci left: 1.293700e-03	ci right 1.535058e-03	k: 536	n:380000
Cons ci ratio: 5.384152e-01	ci left: 1.022019e-04	ci right 1.794464e-04	k: 52	n:380000
KS ci ratio: 2.618350e-03	ci left: 8.539161e-01	ci right 8.561575e-01	k: 324915	n:380000
NOL8   380000 perm   134 sec   (2838 perm/sec)   p_kst 8.550395e-01   p_cons 1.368421e-04   p_joint 1.410526e-03

Joint ci ratio: 1.664263e-01	ci left: 1.302289e-03	ci right 1.541115e-03	k: 553	n:390000
Cons ci ratio: 5.334068e-01	ci left: 1.017981e-04	ci right 1.777535e-04	k: 53	n:390000
KS ci ratio: 2.584226e-03	ci left: 8.539631e-01	ci right 8.561753e-01	k: 333478	n:390000
NOL8   390000 perm   139 sec   (2806 perm/sec)   p_kst 8.550718e-01   p_cons 1.358974e-04   p_joint 1.417949e-03

Joint ci ratio: 1.645076e-01	ci left: 1.300886e-03	ci right 1.536432e-03	k: 566	n:400000
Cons ci ratio: 5.285357e-01	ci left: 1.014177e-04	ci right 1.761421e-04	k: 54	n:400000
KS ci ratio: 2.552972e-03	ci left: 8.538549e-01	ci right 8.560400e-01	k: 341980	n:400000
NOL8   400000 perm   145 sec   (2767 perm/sec)   p_kst 8.549500e-01   p_cons 1.350000e-04   p_joint 1.415000e-03

Joint ci ratio: 1.692073e-01	ci left: 1.196698e-03	ci right 1.420201e-03	k: 535	n:410000
Cons ci ratio: 5.285366e-01	ci left: 9.894409e-05	ci right 1.718460e-04	k: 54	n:410000
KS ci ratio: 2.520790e-03	ci left: 8.539528e-01	ci right 8.561105e-01	k: 350564	n:410000
NOL8   410000 perm   151 sec   (2709 perm/sec)   p_kst 8.550341e-01   p_cons 1.317073e-04   p_joint 1.304878e-03

Joint ci ratio: 1.670397e-01	ci left: 1.200137e-03	ci right 1.421121e-03	k: 549	n:420000
Cons ci ratio: 5.237965e-01	ci left: 9.865273e-05	ci right 1.704492e-04	k: 55	n:420000
KS ci ratio: 2.488598e-03	ci left: 8.541655e-01	ci right 8.562962e-01	k: 359198	n:420000
NOL8   420000 perm   158 sec   (2655 perm/sec)   p_kst 8.552333e-01   p_cons 1.309524e-04   p_joint 1.307143e-03

Joint ci ratio: 1.653943e-01	ci left: 1.196743e-03	ci right 1.414717e-03	k: 560	n:430000
Cons ci ratio: 5.191817e-01	ci left: 9.837773e-05	ci right 1.691145e-04	k: 56	n:430000
KS ci ratio: 2.457812e-03	ci left: 8.543476e-01	ci right 8.564523e-01	k: 367823	n:430000
NOL8   430000 perm   164 sec   (2629 perm/sec)   p_kst 8.554023e-01   p_cons 1.302326e-04   p_joint 1.302326e-03

Joint ci ratio: 1.633683e-01	ci left: 1.200054e-03	ci right 1.415690e-03	k: 574	n:440000
Cons ci ratio: 5.146867e-01	ci left: 9.811789e-05	ci right 1.678379e-04	k: 57	n:440000
KS ci ratio: 2.431552e-03	ci left: 8.541727e-01	ci right 8.562544e-01	k: 376295	n:440000
NOL8   440000 perm   169 sec   (2600 perm/sec)   p_kst 8.552159e-01   p_cons 1.295455e-04   p_joint 1.304545e-03

Joint ci ratio: 1.619665e-01	ci left: 1.194704e-03	ci right 1.407356e-03	k: 584	n:450000
Cons ci ratio: 5.146875e-01	ci left: 9.593746e-05	ci right 1.641083e-04	k: 57	n:450000
KS ci ratio: 2.403286e-03	ci left: 8.542977e-01	ci right 8.563555e-01	k: 384898	n:450000
NOL8   450000 perm   175 sec   (2569 perm/sec)   p_kst 8.553289e-01   p_cons 1.266667e-04   p_joint 1.297778e-03

Joint ci ratio: 1.600624e-01	ci left: 1.197940e-03	ci right 1.408422e-03	k: 598	n:460000
Cons ci ratio: 5.018707e-01	ci left: 9.953691e-05	ci right 1.678923e-04	k: 60	n:460000
KS ci ratio: 2.377026e-03	ci left: 8.543084e-01	ci right 8.563437e-01	k: 393451	n:460000
NOL8   460000 perm   181 sec   (2541 perm/sec)   p_kst 8.553283e-01   p_cons 1.304348e-04   p_joint 1.300000e-03

Joint ci ratio: 1.583532e-01	ci left: 1.199010e-03	ci right 1.407216e-03	k: 611	n:470000
Cons ci ratio: 5.018715e-01	ci left: 9.741907e-05	ci right 1.643202e-04	k: 60	n:470000
KS ci ratio: 2.351305e-03	ci left: 8.543507e-01	ci right 8.563640e-01	k: 402019	n:470000
NOL8   470000 perm   190 sec   (2468 perm/sec)   p_kst 8.553596e-01   p_cons 1.276596e-04   p_joint 1.300000e-03

Joint ci ratio: 1.558264e-01	ci left: 1.214060e-03	ci right 1.421201e-03	k: 631	n:480000
Cons ci ratio: 4.978078e-01	ci left: 9.721003e-05	ci right 1.632409e-04	k: 61	n:480000
KS ci ratio: 2.326577e-03	ci left: 8.543726e-01	ci right 8.563647e-01	k: 410578	n:480000
NOL8   480000 perm   197 sec   (2437 perm/sec)   p_kst 8.553708e-01   p_cons 1.270833e-04   p_joint 1.314583e-03

Joint ci ratio: 1.542481e-01	ci left: 1.214785e-03	ci right 1.419756e-03	k: 644	n:490000
Cons ci ratio: 4.938413e-01	ci left: 9.701163e-05	ci right 1.622036e-04	k: 62	n:490000
KS ci ratio: 2.301569e-03	ci left: 8.545063e-01	ci right 8.564773e-01	k: 419192	n:490000
NOL8   490000 perm   203 sec   (2416 perm/sec)   p_kst 8.554939e-01   p_cons 1.265306e-04   p_joint 1.314286e-03

Joint ci ratio: 1.527168e-01	ci left: 1.215491e-03	ci right 1.418359e-03	k: 657	n:500000
Cons ci ratio: 4.861841e-01	ci left: 9.857695e-05	ci right 1.634502e-04	k: 64	n:500000
KS ci ratio: 2.278454e-03	ci left: 8.545144e-01	ci right 8.564655e-01	k: 427746	n:500000
NOL8   500000 perm   209 sec   (2395 perm/sec)   p_kst 8.554920e-01   p_cons 1.280000e-04   p_joint 1.314000e-03

Joint ci ratio: 1.513432e-01	ci left: 1.214292e-03	ci right 1.414972e-03	k: 669	n:510000
Cons ci ratio: 4.824869e-01	ci left: 9.836531e-05	ci right 1.624439e-04	k: 65	n:510000
KS ci ratio: 2.256201e-03	ci left: 8.545026e-01	ci right 8.564346e-01	k: 436290	n:510000
NOL8   510000 perm   215 sec   (2374 perm/sec)   p_kst 8.554706e-01   p_cons 1.274510e-04   p_joint 1.311765e-03

Joint ci ratio: 1.329422e-01	ci left: 1.558241e-03	ci right 1.781985e-03	k: 867	n:520000
Cons ci ratio: 4.718808e-01	ci left: 1.015488e-04	ci right 1.657783e-04	k: 68	n:520000
KS ci ratio: 2.234135e-03	ci left: 8.545414e-01	ci right 8.564546e-01	k: 444860	n:520000
NOL8   520000 perm   221 sec   (2354 perm/sec)   p_kst 8.555000e-01   p_cons 1.307692e-04   p_joint 1.667308e-03

Joint ci ratio: 1.358765e-01	ci left: 1.461371e-03	ci right 1.676212e-03	k: 830	n:530000
Cons ci ratio: 4.587693e-01	ci left: 1.062950e-04	ci right 1.710764e-04	k: 72	n:530000
KS ci ratio: 2.212924e-03	ci left: 8.545543e-01	ci right 8.564493e-01	k: 453417	n:530000
NOL8   530000 perm   227 sec   (2335 perm/sec)   p_kst 8.555038e-01   p_cons 1.358491e-04   p_joint 1.566038e-03

Joint ci ratio: 1.472259e-01	ci left: 1.214573e-03	ci right 1.409359e-03	k: 707	n:540000
Cons ci ratio: 4.587699e-01	ci left: 1.043265e-04	ci right 1.679084e-04	k: 72	n:540000
KS ci ratio: 2.192093e-03	ci left: 8.545910e-01	ci right 8.564682e-01	k: 461987	n:540000
NOL8   540000 perm   233 sec   (2316 perm/sec)   p_kst 8.555315e-01   p_cons 1.333333e-04   p_joint 1.309259e-03

Joint ci ratio: 1.455896e-01	ci left: 1.220516e-03	ci right 1.413890e-03	k: 723	n:550000
Cons ci ratio: 4.556597e-01	ci left: 1.040384e-04	ci right 1.668818e-04	k: 73	n:550000
KS ci ratio: 2.171471e-03	ci left: 8.546683e-01	ci right 8.565280e-01	k: 470580	n:550000
NOL8   550000 perm   239 sec   (2297 perm/sec)   p_kst 8.556000e-01   p_cons 1.327273e-04   p_joint 1.314545e-03

Joint ci ratio: 1.441042e-01	ci left: 1.224536e-03	ci right 1.416397e-03	k: 738	n:560000
Cons ci ratio: 4.526119e-01	ci left: 1.037619e-04	ci right 1.658905e-04	k: 74	n:560000
KS ci ratio: 2.151467e-03	ci left: 8.547375e-01	ci right 8.565802e-01	k: 479170	n:560000
NOL8   560000 perm   246 sec   (2279 perm/sec)   p_kst 8.556607e-01   p_cons 1.321429e-04   p_joint 1.317857e-03

Joint ci ratio: 1.427582e-01	ci left: 1.226733e-03	ci right 1.416990e-03	k: 752	n:570000
Cons ci ratio: 4.496245e-01	ci left: 1.034966e-04	ci right 1.649326e-04	k: 75	n:570000
KS ci ratio: 2.132050e-03	ci left: 8.547992e-01	ci right 8.566253e-01	k: 487757	n:570000
NOL8   570000 perm   252 sec   (2261 perm/sec)   p_kst 8.557140e-01   p_cons 1.315789e-04   p_joint 1.319298e-03

Joint ci ratio: 1.416343e-01	ci left: 1.225536e-03	ci right 1.413985e-03	k: 764	n:580000
Cons ci ratio: 4.466954e-01	ci left: 1.032416e-04	ci right 1.640065e-04	k: 76	n:580000
KS ci ratio: 2.113755e-03	ci left: 8.547878e-01	ci right 8.565983e-01	k: 496303	n:580000
NOL8   580000 perm   258 sec   (2244 perm/sec)   p_kst 8.556948e-01   p_cons 1.310345e-04   p_joint 1.317241e-03

Joint ci ratio: 1.534341e-01	ci left: 1.020289e-03	ci right 1.191450e-03	k: 651	n:590000
Cons ci ratio: 4.410046e-01	ci left: 1.045027e-04	ci right 1.649931e-04	k: 78	n:590000
KS ci ratio: 2.095750e-03	ci left: 8.547974e-01	ci right 8.565924e-01	k: 504861	n:590000
NOL8   590000 perm   265 sec   (2226 perm/sec)   p_kst 8.556966e-01   p_cons 1.322034e-04   p_joint 1.103390e-03

Joint ci ratio: 1.393754e-01	ci left: 1.224887e-03	ci right 1.409982e-03	k: 789	n:600000
Cons ci ratio: 4.382397e-01	ci left: 1.042431e-04	ci right 1.640933e-04	k: 79	n:600000
KS ci ratio: 2.077257e-03	ci left: 8.549186e-01	ci right 8.566980e-01	k: 513486	n:600000
NOL8   600000 perm   272 sec   (2209 perm/sec)   p_kst 8.558100e-01   p_cons 1.316667e-04   p_joint 1.315000e-03

Joint ci ratio: 1.380705e-01	ci left: 1.228543e-03	ci right 1.412311e-03	k: 804	n:610000
Cons ci ratio: 4.355263e-01	ci left: 1.039932e-04	ci right 1.632218e-04	k: 80	n:610000
KS ci ratio: 2.059833e-03	ci left: 8.549652e-01	ci right 8.567297e-01	k: 522068	n:610000
NOL8   610000 perm   278 sec   (2193 perm/sec)   p_kst 8.558492e-01   p_cons 1.311475e-04   p_joint 1.318033e-03

Joint ci ratio: 1.374748e-01	ci left: 1.219629e-03	ci right 1.401211e-03	k: 811	n:620000
Cons ci ratio: 4.355268e-01	ci left: 1.023158e-04	ci right 1.605893e-04	k: 80	n:620000
KS ci ratio: 2.042386e-03	ci left: 8.550654e-01	ci right 8.568151e-01	k: 530684	n:620000
NOL8   620000 perm   285 sec   (2176 perm/sec)   p_kst 8.559419e-01   p_cons 1.290323e-04   p_joint 1.308065e-03

Joint ci ratio: 1.492583e-01	ci left: 1.012015e-03	ci right 1.176755e-03	k: 688	n:630000
Cons ci ratio: 4.355272e-01	ci left: 1.006918e-04	ci right 1.580403e-04	k: 80	n:630000
KS ci ratio: 2.025778e-03	ci left: 8.551131e-01	ci right 8.568487e-01	k: 539269	n:630000
NOL8   630000 perm   292 sec   (2159 perm/sec)   p_kst 8.559825e-01   p_cons 1.269841e-04   p_joint 1.092063e-03

Joint ci ratio: 1.486132e-01	ci left: 1.005227e-03	ci right 1.168093e-03	k: 694	n:640000
Cons ci ratio: 4.355277e-01	ci left: 9.911843e-05	ci right 1.555709e-04	k: 80	n:640000
KS ci ratio: 2.010091e-03	ci left: 8.550952e-01	ci right 8.568172e-01	k: 547813	n:640000
NOL8   640000 perm   299 sec   (2143 perm/sec)   p_kst 8.559578e-01   p_cons 1.250000e-04   p_joint 1.084375e-03

Joint ci ratio: 1.475555e-01	ci left: 1.004577e-03	ci right 1.166077e-03	k: 704	n:650000
Cons ci ratio: 4.328639e-01	ci left: 9.896380e-05	ci right 1.548832e-04	k: 81	n:650000
KS ci ratio: 1.994327e-03	ci left: 8.551318e-01	ci right 8.568404e-01	k: 556392	n:650000
NOL8   650000 perm   306 sec   (2127 perm/sec)   p_kst 8.559877e-01   p_cons 1.246154e-04   p_joint 1.083077e-03

Joint ci ratio: 1.467257e-01	ci left: 1.001031e-03	ci right 1.160976e-03	k: 712	n:660000
Cons ci ratio: 4.276795e-01	ci left: 1.001664e-04	ci right 1.558931e-04	k: 83	n:660000
KS ci ratio: 1.978916e-03	ci left: 8.551689e-01	ci right 8.568644e-01	k: 564972	n:660000
NOL8   660000 perm   313 sec   (2112 perm/sec)   p_kst 8.560182e-01   p_cons 1.257576e-04   p_joint 1.078788e-03

Joint ci ratio: 1.456068e-01	ci left: 1.001908e-03	ci right 1.160666e-03	k: 723	n:670000
Cons ci ratio: 4.251564e-01	ci left: 1.000037e-04	ci right 1.552182e-04	k: 84	n:670000
KS ci ratio: 1.964487e-03	ci left: 8.551256e-01	ci right 8.568086e-01	k: 573499	n:670000
NOL8   670000 perm   320 sec   (2096 perm/sec)   p_kst 8.559687e-01   p_cons 1.253731e-04   p_joint 1.079104e-03

Joint ci ratio: 1.449084e-01	ci left: 9.970934e-04	ci right 1.154266e-03	k: 730	n:680000
Cons ci ratio: 4.226774e-01	ci left: 9.984674e-05	ci right 1.545622e-04	k: 85	n:680000
KS ci ratio: 1.949880e-03	ci left: 8.551456e-01	ci right 8.568161e-01	k: 582068	n:680000
NOL8   680000 perm   327 sec   (2080 perm/sec)   p_kst 8.559824e-01   p_cons 1.250000e-04   p_joint 1.073529e-03

Joint ci ratio: 1.439273e-01	ci left: 9.966119e-04	ci right 1.152553e-03	k: 740	n:690000
Cons ci ratio: 4.202413e-01	ci left: 9.969523e-05	ci right 1.539243e-04	k: 86	n:690000
KS ci ratio: 1.935231e-03	ci left: 8.552115e-01	ci right 8.568696e-01	k: 590669	n:690000
NOL8   690000 perm   334 sec   (2065 perm/sec)   p_kst 8.560420e-01   p_cons 1.246377e-04   p_joint 1.072464e-03

Joint ci ratio: 1.427758e-01	ci left: 9.989027e-04	ci right 1.153845e-03	k: 752	n:700000
Cons ci ratio: 4.178468e-01	ci left: 9.954892e-05	ci right 1.533037e-04	k: 87	n:700000
KS ci ratio: 1.921518e-03	ci left: 8.551968e-01	ci right 8.568431e-01	k: 599215	n:700000
NOL8   700000 perm   342 sec   (2049 perm/sec)   p_kst 8.560214e-01   p_cons 1.242857e-04   p_joint 1.074286e-03

Joint ci ratio: 1.607721e-01	ci left: 7.693570e-04	ci right 9.051915e-04	k: 593	n:710000
Cons ci ratio: 4.131778e-01	ci left: 1.006692e-04	ci right 1.542543e-04	k: 89	n:710000
KS ci ratio: 1.907777e-03	ci left: 8.552235e-01	ci right 8.568581e-01	k: 607790	n:710000
NOL8   710000 perm   349 sec   (2034 perm/sec)   p_kst 8.560423e-01   p_cons 1.253521e-04   p_joint 8.352113e-04

Joint ci ratio: 1.598333e-01	ci left: 7.680037e-04	ci right 9.027313e-04	k: 600	n:720000
Cons ci ratio: 4.131782e-01	ci left: 9.927101e-05	ci right 1.521119e-04	k: 89	n:720000
KS ci ratio: 1.894594e-03	ci left: 8.552148e-01	ci right 8.568379e-01	k: 616340	n:720000
NOL8   720000 perm   357 sec   (2019 perm/sec)   p_kst 8.560278e-01   p_cons 1.236111e-04   p_joint 8.333333e-04

Joint ci ratio: 1.583901e-01	ci left: 7.719517e-04	ci right 9.060330e-04	k: 611	n:730000
Cons ci ratio: 4.131785e-01	ci left: 9.791112e-05	ci right 1.500282e-04	k: 89	n:730000
KS ci ratio: 1.881763e-03	ci left: 8.551953e-01	ci right 8.568074e-01	k: 624882	n:730000
NOL8   730000 perm   364 sec   (2006 perm/sec)   p_kst 8.560027e-01   p_cons 1.219178e-04   p_joint 8.369863e-04

Joint ci ratio: 1.573649e-01	ci left: 7.719036e-04	ci right 9.050269e-04	k: 619	n:740000
Cons ci ratio: 4.131789e-01	ci left: 9.658798e-05	ci right 1.480009e-04	k: 89	n:740000
KS ci ratio: 1.868903e-03	ci left: 8.552143e-01	ci right 8.568154e-01	k: 633452	n:740000
NOL8   740000 perm   372 sec   (1991 perm/sec)   p_kst 8.560162e-01   p_cons 1.202703e-04   p_joint 8.364865e-04

Joint ci ratio: 1.561108e-01	ci left: 7.744220e-04	ci right 9.068156e-04	k: 629	n:750000
Cons ci ratio: 4.109025e-01	ci left: 9.649524e-05	ci right 1.474983e-04	k: 90	n:750000
KS ci ratio: 1.855751e-03	ci left: 8.553063e-01	ci right 8.568963e-01	k: 642077	n:750000
NOL8   750000 perm   379 sec   (1978 perm/sec)   p_kst 8.561027e-01   p_cons 1.200000e-04   p_joint 8.386667e-04

Joint ci ratio: 1.547653e-01	ci left: 7.781431e-04	ci right 9.099199e-04	k: 640	n:760000
Cons ci ratio: 4.086632e-01	ci left: 9.640570e-05	ci right 1.470083e-04	k: 91	n:760000
KS ci ratio: 1.843275e-03	ci left: 8.553419e-01	ci right 8.569212e-01	k: 650661	n:760000
NOL8   760000 perm   387 sec   (1964 perm/sec)   p_kst 8.561329e-01   p_cons 1.197368e-04   p_joint 8.421053e-04

Joint ci ratio: 1.539272e-01	ci left: 7.767771e-04	ci right 9.075446e-04	k: 647	n:770000
Cons ci ratio: 4.042922e-01	ci left: 9.748549e-05	ci right 1.479607e-04	k: 93	n:770000
KS ci ratio: 1.831598e-03	ci left: 8.553023e-01	ci right 8.568716e-01	k: 659188	n:770000
NOL8   770000 perm   395 sec   (1951 perm/sec)   p_kst 8.560883e-01   p_cons 1.207792e-04   p_joint 8.402597e-04

Joint ci ratio: 1.528692e-01	ci left: 7.779140e-04	ci right 9.078903e-04	k: 656	n:780000
Cons ci ratio: 4.042925e-01	ci left: 9.623566e-05	ci right 1.460638e-04	k: 93	n:780000
KS ci ratio: 1.819667e-03	ci left: 8.553281e-01	ci right 8.568872e-01	k: 667765	n:780000
NOL8   780000 perm   403 sec   (1936 perm/sec)   p_kst 8.561090e-01   p_cons 1.192308e-04   p_joint 8.410256e-04

Joint ci ratio: 1.513785e-01	ci left: 7.838965e-04	ci right 9.134794e-04	k: 669	n:790000
Cons ci ratio: 4.021591e-01	ci left: 9.615492e-05	ci right 1.456084e-04	k: 94	n:790000
KS ci ratio: 1.808263e-03	ci left: 8.553127e-01	ci right 8.568619e-01	k: 676310	n:790000
NOL8   790000 perm   411 sec   (1923 perm/sec)   p_kst 8.560886e-01   p_cons 1.189873e-04   p_joint 8.468354e-04

Joint ci ratio: 1.502611e-01	ci left: 7.861262e-04	ci right 9.150322e-04	k: 679	n:800000
Cons ci ratio: 3.979913e-01	ci left: 9.720143e-05	ci right 1.465386e-04	k: 96	n:800000
KS ci ratio: 1.796833e-03	ci left: 8.553302e-01	ci right 8.568697e-01	k: 684881	n:800000
NOL8   800000 perm   419 sec   (1908 perm/sec)   p_kst 8.561013e-01   p_cons 1.200000e-04   p_joint 8.487500e-04

Joint ci ratio: 1.498216e-01	ci left: 7.811736e-04	ci right 9.088593e-04	k: 683	n:810000
Cons ci ratio: 3.959556e-01	ci left: 9.711273e-05	ci right 1.460867e-04	k: 97	n:810000
KS ci ratio: 1.785349e-03	ci left: 8.553845e-01	ci right 8.569142e-01	k: 693482	n:810000
NOL8   810000 perm   428 sec   (1894 perm/sec)   p_kst 8.561506e-01   p_cons 1.197531e-04   p_joint 8.432099e-04

Joint ci ratio: 1.484174e-01	ci left: 7.869095e-04	ci right 9.142202e-04	k: 696	n:820000
Cons ci ratio: 3.900303e-01	ci left: 9.922545e-05	ci right 1.483234e-04	k: 100	n:820000
KS ci ratio: 1.774548e-03	ci left: 8.553727e-01	ci right 8.568931e-01	k: 702030	n:820000
NOL8   820000 perm   436 sec   (1881 perm/sec)   p_kst 8.561341e-01   p_cons 1.219512e-04   p_joint 8.487805e-04

Joint ci ratio: 1.476778e-01	ci left: 7.855499e-04	ci right 9.119514e-04	k: 703	n:830000
Cons ci ratio: 3.881138e-01	ci left: 9.911691e-05	ci right 1.478585e-04	k: 101	n:830000
KS ci ratio: 1.763932e-03	ci left: 8.553624e-01	ci right 8.568737e-01	k: 710579	n:830000
NOL8   830000 perm   444 sec   (1868 perm/sec)   p_kst 8.561193e-01   p_cons 1.216867e-04   p_joint 8.469880e-04

Joint ci ratio: 1.466399e-01	ci left: 7.876646e-04	ci right 9.134376e-04	k: 713	n:840000
Cons ci ratio: 3.825287e-01	ci left: 1.011624e-04	ci right 1.500140e-04	k: 104	n:840000
KS ci ratio: 1.753284e-03	ci left: 8.553834e-01	ci right 8.568856e-01	k: 719154	n:840000
NOL8   840000 perm   453 sec   (1855 perm/sec)   p_kst 8.561357e-01   p_cons 1.238095e-04   p_joint 8.488095e-04

Joint ci ratio: 1.461294e-01	ci left: 7.840648e-04	ci right 9.087891e-04	k: 718	n:850000
Cons ci ratio: 3.789366e-01	ci left: 1.021001e-04	ci right 1.508262e-04	k: 106	n:850000
KS ci ratio: 1.742777e-03	ci left: 8.554110e-01	ci right 8.569042e-01	k: 727735	n:850000
NOL8   850000 perm   461 sec   (1842 perm/sec)   p_kst 8.561588e-01   p_cons 1.247059e-04   p_joint 8.447059e-04

Joint ci ratio: 1.454233e-01	ci left: 7.827903e-04	ci right 9.066580e-04	k: 725	n:860000
Cons ci ratio: 3.789369e-01	ci left: 1.009128e-04	ci right 1.490724e-04	k: 106	n:860000
KS ci ratio: 1.732472e-03	ci left: 8.554357e-01	ci right 8.569201e-01	k: 736314	n:860000
NOL8   860000 perm   470 sec   (1830 perm/sec)   p_kst 8.561791e-01   p_cons 1.232558e-04   p_joint 8.430233e-04

Joint ci ratio: 1.446287e-01	ci left: 7.826545e-04	ci right 9.057655e-04	k: 733	n:870000
Cons ci ratio: 3.789372e-01	ci left: 9.975290e-05	ci right 1.473590e-04	k: 106	n:870000
KS ci ratio: 1.722485e-03	ci left: 8.554402e-01	ci right 8.569161e-01	k: 744876	n:870000
NOL8   870000 perm   479 sec   (1817 perm/sec)   p_kst 8.561793e-01   p_cons 1.218391e-04   p_joint 8.425287e-04

Joint ci ratio: 1.438470e-01	ci left: 7.825235e-04	ci right 9.048915e-04	k: 741	n:880000
Cons ci ratio: 3.789374e-01	ci left: 9.861933e-05	ci right 1.456845e-04	k: 106	n:880000
KS ci ratio: 1.712542e-03	ci left: 8.554629e-01	ci right 8.569302e-01	k: 753454	n:880000
NOL8   880000 perm   488 sec   (1805 perm/sec)   p_kst 8.561977e-01   p_cons 1.204545e-04   p_joint 8.420455e-04

Joint ci ratio: 1.431733e-01	ci left: 7.813138e-04	ci right 9.028716e-04	k: 748	n:890000
Cons ci ratio: 3.771791e-01	ci left: 9.852807e-05	ci right 1.452774e-04	k: 107	n:890000
KS ci ratio: 1.702824e-03	ci left: 8.554772e-01	ci right 8.569362e-01	k: 762025	n:890000
NOL8   890000 perm   496 sec   (1793 perm/sec)   p_kst 8.562079e-01   p_cons 1.202247e-04   p_joint 8.404494e-04

Joint ci ratio: 1.422269e-01	ci left: 7.833471e-04	ci right 9.043472e-04	k: 758	n:900000
Cons ci ratio: 3.737343e-01	ci left: 9.944585e-05	ci right 1.460942e-04	k: 109	n:900000
KS ci ratio: 1.693292e-03	ci left: 8.554878e-01	ci right 8.569387e-01	k: 770593	n:900000
NOL8   900000 perm   505 sec   (1781 perm/sec)   p_kst 8.562144e-01   p_cons 1.211111e-04   p_joint 8.422222e-04

Joint ci ratio: 1.417610e-01	ci left: 7.800381e-04	ci right 9.000990e-04	k: 763	n:910000
Cons ci ratio: 3.720470e-01	ci left: 9.934895e-05	ci right 1.456902e-04	k: 110	n:910000
KS ci ratio: 1.684061e-03	ci left: 8.554774e-01	ci right 8.569203e-01	k: 779142	n:910000
NOL8   910000 perm   514 sec   (1770 perm/sec)   p_kst 8.562000e-01   p_cons 1.208791e-04   p_joint 8.384615e-04

Joint ci ratio: 1.410246e-01	ci left: 7.799474e-04	ci right 8.993184e-04	k: 771	n:920000
Cons ci ratio: 3.671187e-01	ci left: 1.012271e-04	ci right 1.476690e-04	k: 113	n:920000
KS ci ratio: 1.674285e-03	ci left: 8.555696e-01	ci right 8.570043e-01	k: 787785	n:920000
NOL8   920000 perm   523 sec   (1758 perm/sec)   p_kst 8.562880e-01   p_cons 1.228261e-04   p_joint 8.380435e-04

Joint ci ratio: 1.293153e-01	ci left: 9.232555e-04	ci right 1.051928e-03	k: 917	n:930000
Cons ci ratio: 3.639400e-01	ci left: 1.020917e-04	ci right 1.484284e-04	k: 115	n:930000
KS ci ratio: 1.665469e-03	ci left: 8.555423e-01	ci right 8.569694e-01	k: 796319	n:930000
NOL8   930000 perm   532 sec   (1747 perm/sec)   p_kst 8.562570e-01   p_cons 1.236559e-04   p_joint 9.860215e-04

Joint ci ratio: 1.286861e-01	ci left: 9.226991e-04	ci right 1.050621e-03	k: 926	n:940000
Cons ci ratio: 3.578224e-01	ci left: 1.048752e-04	ci right 1.514888e-04	k: 119	n:940000
KS ci ratio: 1.657120e-03	ci left: 8.554666e-01	ci right 8.568865e-01	k: 804807	n:940000
NOL8   940000 perm   542 sec   (1736 perm/sec)   p_kst 8.561777e-01   p_cons 1.265957e-04   p_joint 9.851064e-04

Joint ci ratio: 1.284098e-01	ci left: 9.170614e-04	ci right 1.043908e-03	k: 930	n:950000
Cons ci ratio: 3.578226e-01	ci left: 1.037712e-04	ci right 1.498942e-04	k: 119	n:950000
KS ci ratio: 1.648811e-03	ci left: 8.554052e-01	ci right 8.568178e-01	k: 813307	n:950000
NOL8   950000 perm   551 sec   (1725 perm/sec)   p_kst 8.561126e-01   p_cons 1.252632e-04   p_joint 9.789474e-04

Joint ci ratio: 1.276578e-01	ci left: 9.186001e-04	ci right 1.044859e-03	k: 941	n:960000
Cons ci ratio: 3.534317e-01	ci left: 1.055361e-04	ci right 1.517358e-04	k: 122	n:960000
KS ci ratio: 1.640181e-03	ci left: 8.554120e-01	ci right 8.568171e-01	k: 821871	n:960000
NOL8   960000 perm   560 sec   (1713 perm/sec)   p_kst 8.561156e-01   p_cons 1.270833e-04   p_joint 9.802083e-04

Joint ci ratio: 1.269855e-01	ci left: 9.191109e-04	ci right 1.044724e-03	k: 951	n:970000
Cons ci ratio: 3.505927e-01	ci left: 1.063277e-04	ci right 1.524149e-04	k: 124	n:970000
KS ci ratio: 1.631726e-03	ci left: 8.554123e-01	ci right 8.568103e-01	k: 830429	n:970000
NOL8   970000 perm   570 sec   (1703 perm/sec)   p_kst 8.561124e-01   p_cons 1.278351e-04   p_joint 9.804124e-04

Joint ci ratio: 1.241468e-01	ci left: 9.532211e-04	ci right 1.080370e-03	k: 995	n:980000
Cons ci ratio: 3.464595e-01	ci left: 1.080360e-04	ci right 1.541878e-04	k: 127	n:980000
KS ci ratio: 1.623380e-03	ci left: 8.554158e-01	ci right 8.568066e-01	k: 838990	n:980000
NOL8   980000 perm   579 sec   (1692 perm/sec)   p_kst 8.561122e-01   p_cons 1.295918e-04   p_joint 1.015306e-03

Joint ci ratio: 1.238366e-01	ci left: 9.484864e-04	ci right 1.074664e-03	k: 1000	n:990000
Cons ci ratio: 3.451141e-01	ci left: 1.078671e-04	ci right 1.537278e-04	k: 128	n:990000
KS ci ratio: 1.615260e-03	ci left: 8.554040e-01	ci right 8.567878e-01	k: 847536	n:990000
NOL8   990000 perm   589 sec   (1681 perm/sec)   p_kst 8.560970e-01   p_cons 1.292929e-04   p_joint 1.010101e-03

Joint ci ratio: 1.231617e-01	ci left: 9.496617e-04	ci right 1.075257e-03	k: 1011	n:1000000
Cons ci ratio: 3.437842e-01	ci left: 1.077019e-04	ci right 1.532767e-04	k: 129	n:1000000
KS ci ratio: 1.607307e-03	ci left: 8.553855e-01	ci right 8.567624e-01	k: 856075	n:1000000
NOL8   1000000 perm   599 sec   (1671 perm/sec)   p_kst 8.560750e-01   p_cons 1.290000e-04   p_joint 1.011000e-03

Joint ci ratio: 1.224977e-01	ci left: 9.508156e-04	ci right 1.075837e-03	k: 1022	n:1010000
Cons ci ratio: 3.424696e-01	ci left: 1.075404e-04	ci right 1.528342e-04	k: 130	n:1010000
KS ci ratio: 1.599297e-03	ci left: 8.553941e-01	ci right 8.567642e-01	k: 864641	n:1010000
NOL8   1010000 perm   608 sec   (1660 perm/sec)   p_kst 8.560802e-01   p_cons 1.287129e-04   p_joint 1.011881e-03

Joint ci ratio: 1.219034e-01	ci left: 9.509981e-04	ci right 1.075393e-03	k: 1032	n:1020000
Cons ci ratio: 3.411700e-01	ci left: 1.073823e-04	ci right 1.524001e-04	k: 131	n:1020000
KS ci ratio: 1.591519e-03	ci left: 8.553849e-01	ci right 8.567483e-01	k: 873189	n:1020000
NOL8   1020000 perm   618 sec   (1650 perm/sec)   p_kst 8.560676e-01   p_cons 1.284314e-04   p_joint 1.011765e-03

Joint ci ratio: 1.213758e-01	ci left: 9.502371e-04	ci right 1.073956e-03	k: 1041	n:1030000
Cons ci ratio: 3.398850e-01	ci left: 1.072276e-04	ci right 1.519741e-04	k: 132	n:1030000
KS ci ratio: 1.583847e-03	ci left: 8.553769e-01	ci right 8.567337e-01	k: 881738	n:1030000
NOL8   1030000 perm   628 sec   (1640 perm/sec)   p_kst 8.560563e-01   p_cons 1.281553e-04   p_joint 1.010680e-03

Joint ci ratio: 1.208551e-01	ci left: 9.494919e-04	ci right 1.072545e-03	k: 1050	n:1040000
Cons ci ratio: 3.398852e-01	ci left: 1.061965e-04	ci right 1.505128e-04	k: 132	n:1040000
KS ci ratio: 1.576020e-03	ci left: 8.554105e-01	ci right 8.567606e-01	k: 890330	n:1040000
NOL8   1040000 perm   638 sec   (1630 perm/sec)   p_kst 8.560865e-01   p_cons 1.269231e-04   p_joint 1.009615e-03

Joint ci ratio: 1.202842e-01	ci left: 9.496857e-04	ci right 1.072141e-03	k: 1060	n:1050000
Cons ci ratio: 3.386147e-01	ci left: 1.060564e-04	ci right 1.501126e-04	k: 133	n:1050000
KS ci ratio: 1.568424e-03	ci left: 8.554253e-01	ci right 8.567689e-01	k: 898903	n:1050000
NOL8   1050000 perm   648 sec   (1621 perm/sec)   p_kst 8.560981e-01   p_cons 1.266667e-04   p_joint 1.009524e-03

Joint ci ratio: 1.193871e-01	ci left: 9.553684e-04	ci right 1.077573e-03	k: 1076	n:1060000
Cons ci ratio: 3.386149e-01	ci left: 1.050559e-04	ci right 1.486964e-04	k: 133	n:1060000
KS ci ratio: 1.560835e-03	ci left: 8.554559e-01	ci right 8.567931e-01	k: 907493	n:1060000
NOL8   1060000 perm   658 sec   (1611 perm/sec)   p_kst 8.561255e-01   p_cons 1.254717e-04   p_joint 1.015094e-03

Joint ci ratio: 1.191112e-01	ci left: 9.509731e-04	ci right 1.072315e-03	k: 1081	n:1070000
Cons ci ratio: 3.348866e-01	ci left: 1.066407e-04	ci right 1.503466e-04	k: 136	n:1070000
KS ci ratio: 1.553201e-03	ci left: 8.555103e-01	ci right 8.568410e-01	k: 916109	n:1070000
NOL8   1070000 perm   668 sec   (1601 perm/sec)   p_kst 8.561766e-01   p_cons 1.271028e-04   p_joint 1.010280e-03

Joint ci ratio: 1.184560e-01	ci left: 9.529488e-04	ci right 1.073827e-03	k: 1093	n:1080000
Cons ci ratio: 3.312788e-01	ci left: 1.081988e-04	ci right 1.519638e-04	k: 139	n:1080000
KS ci ratio: 1.546033e-03	ci left: 8.555071e-01	ci right 8.568317e-01	k: 924664	n:1080000
NOL8   1080000 perm   679 sec   (1592 perm/sec)   p_kst 8.561704e-01   p_cons 1.287037e-04   p_joint 1.012037e-03

Joint ci ratio: 1.178649e-01	ci left: 9.539997e-04	ci right 1.074365e-03	k: 1104	n:1090000
Cons ci ratio: 3.301020e-01	ci left: 1.080474e-04	ci right 1.515629e-04	k: 140	n:1090000
KS ci ratio: 1.538728e-03	ci left: 8.555417e-01	ci right 8.568601e-01	k: 933260	n:1090000
NOL8   1090000 perm   689 sec   (1582 perm/sec)   p_kst 8.562018e-01   p_cons 1.284404e-04   p_joint 1.012844e-03

Joint ci ratio: 1.174935e-01	ci left: 9.515032e-04	ci right 1.071149e-03	k: 1111	n:1100000
Cons ci ratio: 3.301022e-01	ci left: 1.070652e-04	ci right 1.501851e-04	k: 140	n:1100000
KS ci ratio: 1.531656e-03	ci left: 8.555547e-01	ci right 8.568670e-01	k: 941833	n:1100000
NOL8   1100000 perm   700 sec   (1573 perm/sec)   p_kst 8.562118e-01   p_cons 1.272727e-04   p_joint 1.010000e-03

Joint ci ratio: 1.168125e-01	ci left: 9.542997e-04	ci right 1.073554e-03	k: 1124	n:1110000
Cons ci ratio: 3.301024e-01	ci left: 1.061006e-04	ci right 1.488321e-04	k: 140	n:1110000
KS ci ratio: 1.524385e-03	ci left: 8.556154e-01	ci right 8.569215e-01	k: 950459	n:1110000
NOL8   1110000 perm   710 sec   (1563 perm/sec)   p_kst 8.562694e-01   p_cons 1.261261e-04   p_joint 1.012613e-03

Joint ci ratio: 1.159903e-01	ci left: 9.596491e-04	ci right 1.078670e-03	k: 1140	n:1120000
Cons ci ratio: 3.277858e-01	ci left: 1.067916e-04	ci right 1.494359e-04	k: 142	n:1120000
KS ci ratio: 1.517684e-03	ci left: 8.555989e-01	ci right 8.568993e-01	k: 959000	n:1120000
NOL8   1120000 perm   720 sec   (1555 perm/sec)   p_kst 8.562500e-01   p_cons 1.267857e-04   p_joint 1.017857e-03

Joint ci ratio: 1.154352e-01	ci left: 9.606094e-04	ci right 1.079140e-03	k: 1151	n:1130000
Cons ci ratio: 3.266457e-01	ci left: 1.066588e-04	ci right 1.490708e-04	k: 143	n:1130000
KS ci ratio: 1.510755e-03	ci left: 8.556341e-01	ci right 8.569286e-01	k: 967599	n:1130000
NOL8   1130000 perm   731 sec   (1546 perm/sec)   p_kst 8.562823e-01   p_cons 1.265487e-04   p_joint 1.018584e-03

Joint ci ratio: 1.150365e-01	ci left: 9.589983e-04	ci right 1.076894e-03	k: 1159	n:1140000
Cons ci ratio: 3.244006e-01	ci left: 1.073342e-04	ci right 1.496604e-04	k: 145	n:1140000
KS ci ratio: 1.504145e-03	ci left: 8.556319e-01	ci right 8.569207e-01	k: 976156	n:1140000
NOL8   1140000 perm   741 sec   (1538 perm/sec)   p_kst 8.562772e-01   p_cons 1.271930e-04   p_joint 1.016667e-03

Joint ci ratio: 1.146912e-01	ci left: 9.565712e-04	ci right 1.073791e-03	k: 1166	n:1150000
Cons ci ratio: 3.244008e-01	ci left: 1.064009e-04	ci right 1.483591e-04	k: 145	n:1150000
KS ci ratio: 1.497818e-03	ci left: 8.555974e-01	ci right 8.568808e-01	k: 984676	n:1150000
NOL8   1150000 perm   752 sec   (1529 perm/sec)   p_kst 8.562400e-01   p_cons 1.260870e-04   p_joint 1.013913e-03

Joint ci ratio: 1.140575e-01	ci left: 9.592112e-04	ci right 1.076062e-03	k: 1179	n:1160000
Cons ci ratio: 3.211181e-01	ci left: 1.078603e-04	ci right 1.498751e-04	k: 148	n:1160000
KS ci ratio: 1.491475e-03	ci left: 8.555791e-01	ci right 8.568570e-01	k: 993214	n:1160000
NOL8   1160000 perm   763 sec   (1521 perm/sec)   p_kst 8.562190e-01   p_cons 1.275862e-04   p_joint 1.016379e-03

Joint ci ratio: 1.133867e-01	ci left: 9.626384e-04	ci right 1.079171e-03	k: 1193	n:1170000
Cons ci ratio: 3.211183e-01	ci left: 1.069385e-04	ci right 1.485941e-04	k: 148	n:1170000
KS ci ratio: 1.485346e-03	ci left: 8.555389e-01	ci right 8.568115e-01	k: 1001726	n:1170000
NOL8   1170000 perm   774 sec   (1512 perm/sec)   p_kst 8.561761e-01   p_cons 1.264957e-04   p_joint 1.019658e-03

Joint ci ratio: 1.131503e-01	ci left: 9.585976e-04	ci right 1.074383e-03	k: 1198	n:1180000
Cons ci ratio: 3.200462e-01	ci left: 1.068115e-04	ci right 1.482503e-04	k: 149	n:1180000
KS ci ratio: 1.478870e-03	ci left: 8.555698e-01	ci right 8.568369e-01	k: 1010321	n:1180000
NOL8   1180000 perm   785 sec   (1504 perm/sec)   p_kst 8.562042e-01   p_cons 1.262712e-04   p_joint 1.015254e-03

Joint ci ratio: 1.124025e-01	ci left: 9.636084e-04	ci right 1.079178e-03	k: 1214	n:1190000
Cons ci ratio: 3.189847e-01	ci left: 1.066868e-04	ci right 1.479120e-04	k: 150	n:1190000
KS ci ratio: 1.472724e-03	ci left: 8.555590e-01	ci right 8.568208e-01	k: 1018867	n:1190000
NOL8   1190000 perm   796 sec   (1495 perm/sec)   p_kst 8.561908e-01   p_cons 1.260504e-04   p_joint 1.020168e-03

Joint ci ratio: 1.119885e-01	ci left: 9.628678e-04	ci right 1.077896e-03	k: 1223	n:1200000
Cons ci ratio: 3.179337e-01	ci left: 1.065645e-04	ci right 1.475791e-04	k: 151	n:1200000
KS ci ratio: 1.466574e-03	ci left: 8.555617e-01	ci right 8.568182e-01	k: 1027429	n:1200000
NOL8   1200000 perm   807 sec   (1487 perm/sec)   p_kst 8.561908e-01   p_cons 1.258333e-04   p_joint 1.019167e-03

Joint ci ratio: 1.115339e-01	ci left: 9.629437e-04	ci right 1.077483e-03	k: 1233	n:1210000
Cons ci ratio: 3.158624e-01	ci left: 1.072053e-04	ci right 1.481433e-04	k: 153	n:1210000
KS ci ratio: 1.460256e-03	ci left: 8.556058e-01	ci right 8.568569e-01	k: 1036041	n:1210000
NOL8   1210000 perm   818 sec   (1479 perm/sec)   p_kst 8.562322e-01   p_cons 1.264463e-04   p_joint 1.019008e-03

Joint ci ratio: 1.110847e-01	ci left: 9.630192e-04	ci right 1.077076e-03	k: 1243	n:1220000
Cons ci ratio: 3.138310e-01	ci left: 1.078364e-04	ci right 1.486975e-04	k: 155	n:1220000
KS ci ratio: 1.454357e-03	ci left: 8.555917e-01	ci right 8.568377e-01	k: 1044583	n:1220000
NOL8   1220000 perm   830 sec   (1471 perm/sec)   p_kst 8.562156e-01   p_cons 1.270492e-04   p_joint 1.018852e-03

Joint ci ratio: 1.107293e-01	ci left: 9.615134e-04	ci right 1.075004e-03	k: 1251	n:1230000
Cons ci ratio: 3.128300e-01	ci left: 1.077087e-04	ci right 1.483653e-04	k: 156	n:1230000
KS ci ratio: 1.448534e-03	ci left: 8.555770e-01	ci right 8.568180e-01	k: 1053124	n:1230000
NOL8   1230000 perm   841 sec   (1463 perm/sec)   p_kst 8.561984e-01   p_cons 1.268293e-04   p_joint 1.017073e-03

Joint ci ratio: 8.302921e-02	ci left: 1.719837e-03	ci right 1.869602e-03	k: 2224	n:1240000
Cons ci ratio: 1.229915e-01	ci left: 7.681967e-04	ci right 8.696422e-04	k: 1014	n:1240000
KS ci ratio: 1.442662e-03	ci left: 8.555828e-01	ci right 8.568188e-01	k: 1061690	n:1240000
NOL8   1240000 perm   852 sec   (1455 perm/sec)   p_kst 8.562016e-01   p_cons 8.177419e-04   p_joint 1.793548e-03

Joint ci ratio: 8.262161e-02	ci left: 1.723314e-03	ci right 1.872610e-03	k: 2246	n:1250000
Cons ci ratio: 1.225096e-01	ci left: 7.682546e-04	ci right 8.692815e-04	k: 1022	n:1250000
KS ci ratio: 1.436960e-03	ci left: 8.555716e-01	ci right 8.568027e-01	k: 1070235	n:1250000
NOL8   1250000 perm   864 sec   (1446 perm/sec)   p_kst 8.561880e-01   p_cons 8.176000e-04   p_joint 1.796800e-03

Joint ci ratio: 8.238380e-02	ci left: 1.719741e-03	ci right 1.868278e-03	k: 2259	n:1260000
Cons ci ratio: 1.220334e-01	ci left: 7.683123e-04	ci right 8.689257e-04	k: 1030	n:1260000
KS ci ratio: 1.431056e-03	ci left: 8.556068e-01	ci right 8.568329e-01	k: 1078838	n:1260000
NOL8   1260000 perm   876 sec   (1438 perm/sec)   p_kst 8.562206e-01   p_cons 8.174603e-04   p_joint 1.792857e-03

Joint ci ratio: 8.200360e-02	ci left: 1.722396e-03	ci right 1.870442e-03	k: 2280	n:1270000
Cons ci ratio: 1.215627e-01	ci left: 7.683699e-04	ci right 8.685748e-04	k: 1038	n:1270000
KS ci ratio: 1.425348e-03	ci left: 8.556201e-01	ci right 8.568413e-01	k: 1087414	n:1270000
NOL8   1270000 perm   888 sec   (1430 perm/sec)   p_kst 8.562315e-01   p_cons 8.173228e-04   p_joint 1.795276e-03

Joint ci ratio: 8.178893e-02	ci left: 1.718122e-03	ci right 1.865397e-03	k: 2292	n:1280000
Cons ci ratio: 1.213296e-01	ci left: 7.653970e-04	ci right 8.650090e-04	k: 1042	n:1280000
KS ci ratio: 1.419865e-03	ci left: 8.556058e-01	ci right 8.568223e-01	k: 1095955	n:1280000
NOL8   1280000 perm   900 sec   (1423 perm/sec)   p_kst 8.562148e-01   p_cons 8.140625e-04   p_joint 1.790625e-03

Joint ci ratio: 8.155822e-02	ci left: 1.714675e-03	ci right 1.861220e-03	k: 2305	n:1290000
Cons ci ratio: 1.209822e-01	ci left: 7.639739e-04	ci right 8.630956e-04	k: 1048	n:1290000
KS ci ratio: 1.414254e-03	ci left: 8.556251e-01	ci right 8.568368e-01	k: 1104539	n:1290000
NOL8   1290000 perm   912 sec   (1415 perm/sec)   p_kst 8.562318e-01   p_cons 8.124031e-04   p_joint 1.786822e-03

Joint ci ratio: 8.124176e-02	ci left: 1.715050e-03	ci right 1.861030e-03	k: 2323	n:1300000
Cons ci ratio: 1.205806e-01	ci left: 7.633191e-04	ci right 8.620037e-04	k: 1055	n:1300000
KS ci ratio: 1.408431e-03	ci left: 8.556927e-01	ci right 8.568995e-01	k: 1113186	n:1300000
NOL8   1300000 perm   924 sec   (1408 perm/sec)   p_kst 8.562969e-01   p_cons 8.115385e-04   p_joint 1.786923e-03

Joint ci ratio: 8.087707e-02	ci left: 1.717663e-03	ci right 1.863179e-03	k: 2344	n:1310000
Cons ci ratio: 1.202396e-01	ci left: 7.619344e-04	ci right 8.601416e-04	k: 1061	n:1310000
KS ci ratio: 1.403128e-03	ci left: 8.556805e-01	ci right 8.568828e-01	k: 1121730	n:1310000
NOL8   1310000 perm   936 sec   (1400 perm/sec)   p_kst 8.562824e-01   p_cons 8.099237e-04   p_joint 1.789313e-03

Joint ci ratio: 8.033040e-02	ci left: 1.728405e-03	ci right 1.873795e-03	k: 2376	n:1320000
Cons ci ratio: 1.193436e-01	ci left: 7.679203e-04	ci right 8.661094e-04	k: 1077	n:1320000
KS ci ratio: 1.398065e-03	ci left: 8.556367e-01	ci right 8.568345e-01	k: 1130232	n:1320000
NOL8   1320000 perm   948 sec   (1393 perm/sec)   p_kst 8.562364e-01   p_cons 8.159091e-04   p_joint 1.800000e-03

Joint ci ratio: 8.006146e-02	ci left: 1.727198e-03	ci right 1.871978e-03	k: 2392	n:1330000
Cons ci ratio: 1.187938e-01	ci left: 7.694414e-04	ci right 8.673399e-04	k: 1087	n:1330000
KS ci ratio: 1.392626e-03	ci left: 8.556695e-01	ci right 8.568627e-01	k: 1138835	n:1330000
NOL8   1330000 perm   960 sec   (1385 perm/sec)   p_kst 8.562669e-01   p_cons 8.172932e-04   p_joint 1.798496e-03

Joint ci ratio: 7.981180e-02	ci left: 1.725279e-03	ci right 1.869425e-03	k: 2407	n:1340000
Cons ci ratio: 1.184677e-01	ci left: 7.680440e-04	ci right 8.654777e-04	k: 1093	n:1340000
KS ci ratio: 1.387440e-03	ci left: 8.556683e-01	ci right 8.568570e-01	k: 1147393	n:1340000
NOL8   1340000 perm   972 sec   (1378 perm/sec)   p_kst 8.562634e-01   p_cons 8.156716e-04   p_joint 1.796269e-03

Joint ci ratio: 7.949875e-02	ci left: 1.726293e-03	ci right 1.869932e-03	k: 2426	n:1350000
Cons ci ratio: 1.183058e-01	ci left: 7.645111e-04	ci right 8.613549e-04	k: 1096	n:1350000
KS ci ratio: 1.382281e-03	ci left: 8.556723e-01	ci right 8.568566e-01	k: 1155958	n:1350000
NOL8   1350000 perm   985 sec   (1371 perm/sec)   p_kst 8.562652e-01   p_cons 8.118519e-04   p_joint 1.797037e-03

Joint ci ratio: 7.923805e-02	ci left: 1.725131e-03	ci right 1.868181e-03	k: 2442	n:1360000
Cons ci ratio: 1.180373e-01	ci left: 7.624575e-04	ci right 8.588065e-04	k: 1101	n:1360000
KS ci ratio: 1.377489e-03	ci left: 8.556209e-01	ci right 8.568011e-01	k: 1164448	n:1360000
NOL8   1360000 perm   997 sec   (1364 perm/sec)   p_kst 8.562118e-01   p_cons 8.095588e-04   p_joint 1.795588e-03

Joint ci ratio: 7.899599e-02	ci left: 1.723271e-03	ci right 1.865710e-03	k: 2457	n:1370000
Cons ci ratio: 1.176111e-01	ci left: 7.625594e-04	ci right 8.585493e-04	k: 1109	n:1370000
KS ci ratio: 1.372372e-03	ci left: 8.556376e-01	ci right 8.568134e-01	k: 1173030	n:1370000
NOL8   1370000 perm   1010 sec   (1357 perm/sec)   p_kst 8.562263e-01   p_cons 8.094891e-04   p_joint 1.793431e-03

Joint ci ratio: 7.867649e-02	ci left: 1.724990e-03	ci right 1.866969e-03	k: 2477	n:1380000
Cons ci ratio: 1.171372e-01	ci left: 7.633639e-04	ci right 8.590410e-04	k: 1118	n:1380000
KS ci ratio: 1.367379e-03	ci left: 8.556418e-01	ci right 8.568133e-01	k: 1181595	n:1380000
NOL8   1380000 perm   1022 sec   (1350 perm/sec)   p_kst 8.562283e-01   p_cons 8.101449e-04   p_joint 1.794928e-03

Joint ci ratio: 7.848685e-02	ci left: 1.721044e-03	ci right 1.862340e-03	k: 2489	n:1390000
Cons ci ratio: 1.168245e-01	ci left: 7.620623e-04	ci right 8.573037e-04	k: 1124	n:1390000
KS ci ratio: 1.362409e-03	ci left: 8.556516e-01	ci right 8.568188e-01	k: 1190168	n:1390000
NOL8   1390000 perm   1035 sec   (1343 perm/sec)   p_kst 8.562360e-01   p_cons 8.086331e-04   p_joint 1.790647e-03

Joint ci ratio: 7.825159e-02	ci left: 1.719255e-03	ci right 1.859962e-03	k: 2504	n:1400000
Cons ci ratio: 1.163599e-01	ci left: 7.628601e-04	ci right 8.577960e-04	k: 1133	n:1400000
KS ci ratio: 1.357615e-03	ci left: 8.556391e-01	ci right 8.568022e-01	k: 1198710	n:1400000
NOL8   1400000 perm   1047 sec   (1337 perm/sec)   p_kst 8.562214e-01   p_cons 8.092857e-04   p_joint 1.788571e-03

Joint ci ratio: 7.797195e-02	ci left: 1.719578e-03	ci right 1.859786e-03	k: 2522	n:1410000
Cons ci ratio: 1.157995e-01	ci left: 7.650247e-04	ci right 8.597402e-04	k: 1144	n:1410000
KS ci ratio: 1.353128e-03	ci left: 8.555800e-01	ci right 8.567391e-01	k: 1207186	n:1410000
NOL8   1410000 perm   1060 sec   (1330 perm/sec)   p_kst 8.561603e-01   p_cons 8.113475e-04   p_joint 1.788652e-03

Joint ci ratio: 7.757305e-02	ci left: 1.725422e-03	ci right 1.865355e-03	k: 2548	n:1420000
Cons ci ratio: 1.150978e-01	ci left: 7.692117e-04	ci right 8.638293e-04	k: 1158	n:1420000
KS ci ratio: 1.348446e-03	ci left: 8.555654e-01	ci right 8.567205e-01	k: 1215724	n:1420000
NOL8   1420000 perm   1073 sec   (1323 perm/sec)   p_kst 8.561437e-01   p_cons 8.154930e-04   p_joint 1.794366e-03

Joint ci ratio: 7.722529e-02	ci left: 1.729129e-03	ci right 1.868705e-03	k: 2571	n:1430000
Cons ci ratio: 1.142625e-01	ci left: 7.753799e-04	ci right 8.700173e-04	k: 1175	n:1430000
KS ci ratio: 1.343827e-03	ci left: 8.555482e-01	ci right 8.566993e-01	k: 1224258	n:1430000
NOL8   1430000 perm   1086 sec   (1317 perm/sec)   p_kst 8.561245e-01   p_cons 8.216783e-04   p_joint 1.797902e-03

Joint ci ratio: 7.703099e-02	ci left: 1.725975e-03	ci right 1.864930e-03	k: 2584	n:1440000
Cons ci ratio: 1.138758e-01	ci left: 7.753923e-04	ci right 8.696895e-04	k: 1183	n:1440000
KS ci ratio: 1.339173e-03	ci left: 8.555465e-01	ci right 8.566937e-01	k: 1232814	n:1440000
NOL8   1440000 perm   1099 sec   (1310 perm/sec)   p_kst 8.561208e-01   p_cons 8.215278e-04   p_joint 1.794444e-03

Joint ci ratio: 7.667571e-02	ci left: 1.730305e-03	ci right 1.868938e-03	k: 2608	n:1450000
Cons ci ratio: 1.133979e-01	ci left: 7.767454e-04	ci right 8.707841e-04	k: 1193	n:1450000
KS ci ratio: 1.334447e-03	ci left: 8.555670e-01	ci right 8.567102e-01	k: 1241402	n:1450000
NOL8   1450000 perm   1112 sec   (1304 perm/sec)   p_kst 8.561393e-01   p_cons 8.227586e-04   p_joint 1.798621e-03

Joint ci ratio: 7.636890e-02	ci left: 1.732562e-03	ci right 1.870796e-03	k: 2629	n:1460000
Cons ci ratio: 1.130199e-01	ci left: 7.767495e-04	ci right 8.704544e-04	k: 1201	n:1460000
KS ci ratio: 1.329693e-03	ci left: 8.556017e-01	ci right 8.567408e-01	k: 1250011	n:1460000
NOL8   1460000 perm   1125 sec   (1297 perm/sec)   p_kst 8.561719e-01   p_cons 8.226027e-04   p_joint 1.800685e-03

Joint ci ratio: 7.610889e-02	ci left: 1.732788e-03	ci right 1.870548e-03	k: 2647	n:1470000
Cons ci ratio: 1.124134e-01	ci left: 7.800598e-04	ci right 8.736256e-04	k: 1214	n:1470000
KS ci ratio: 1.325092e-03	ci left: 8.556167e-01	ci right 8.567519e-01	k: 1258592	n:1470000
NOL8   1470000 perm   1139 sec   (1291 perm/sec)   p_kst 8.561850e-01   p_cons 8.258503e-04   p_joint 1.800680e-03

Joint ci ratio: 7.596580e-02	ci left: 1.727708e-03	ci right 1.864794e-03	k: 2657	n:1480000
Cons ci ratio: 1.121830e-01	ci left: 7.780725e-04	ci right 8.711960e-04	k: 1219	n:1480000
KS ci ratio: 1.320553e-03	ci left: 8.556289e-01	ci right 8.567602e-01	k: 1267169	n:1480000
NOL8   1480000 perm   1152 sec   (1285 perm/sec)   p_kst 8.561953e-01   p_cons 8.236486e-04   p_joint 1.795270e-03

Joint ci ratio: 7.572405e-02	ci left: 1.727305e-03	ci right 1.863904e-03	k: 2674	n:1490000
Cons ci ratio: 1.118170e-01	ci left: 7.780693e-04	ci right 8.708685e-04	k: 1227	n:1490000
KS ci ratio: 1.316042e-03	ci left: 8.556443e-01	ci right 8.567718e-01	k: 1275751	n:1490000
NOL8   1490000 perm   1165 sec   (1279 perm/sec)   p_kst 8.562087e-01   p_cons 8.234899e-04   p_joint 1.794631e-03

Joint ci ratio: 7.544250e-02	ci left: 1.728871e-03	ci right 1.865064e-03	k: 2694	n:1500000
Cons ci ratio: 1.114094e-01	ci left: 7.787147e-04	ci right 8.712302e-04	k: 1236	n:1500000
KS ci ratio: 1.311730e-03	ci left: 8.556308e-01	ci right 8.567545e-01	k: 1284290	n:1500000
NOL8   1500000 perm   1178 sec   (1273 perm/sec)   p_kst 8.561933e-01   p_cons 8.240000e-04   p_joint 1.796000e-03

Joint ci ratio: 7.527524e-02	ci left: 1.725219e-03	ci right 1.860809e-03	k: 2706	n:1510000
Cons ci ratio: 1.110956e-01	ci left: 7.780644e-04	ci right 8.702251e-04	k: 1243	n:1510000
KS ci ratio: 1.307133e-03	ci left: 8.556791e-01	ci right 8.567990e-01	k: 1292922	n:1510000
NOL8   1510000 perm   1192 sec   (1267 perm/sec)   p_kst 8.562397e-01   p_cons 8.231788e-04   p_joint 1.792053e-03

Joint ci ratio: 7.509526e-02	ci left: 1.722261e-03	ci right 1.857280e-03	k: 2719	n:1520000
Cons ci ratio: 1.109176e-01	ci left: 7.755040e-04	ci right 8.672047e-04	k: 1247	n:1520000
KS ci ratio: 1.302681e-03	ci left: 8.557084e-01	ci right 8.568245e-01	k: 1301526	n:1520000
NOL8   1520000 perm   1206 sec   (1261 perm/sec)   p_kst 8.562671e-01   p_cons 8.203947e-04   p_joint 1.788816e-03

Joint ci ratio: 7.486171e-02	ci left: 1.721907e-03	ci right 1.856461e-03	k: 2736	n:1530000
Cons ci ratio: 1.104758e-01	ci left: 7.767904e-04	ci right 8.682535e-04	k: 1257	n:1530000
KS ci ratio: 1.298674e-03	ci left: 8.556613e-01	ci right 8.567739e-01	k: 1310014	n:1530000
NOL8   1530000 perm   1219 sec   (1255 perm/sec)   p_kst 8.562183e-01   p_cons 8.215686e-04   p_joint 1.788235e-03

Joint ci ratio: 7.468467e-02	ci left: 1.719009e-03	ci right 1.853005e-03	k: 2749	n:1540000
Cons ci ratio: 1.102133e-01	ci left: 7.755348e-04	ci right 8.666191e-04	k: 1263	n:1540000
KS ci ratio: 1.294650e-03	ci left: 8.556253e-01	ci right 8.567344e-01	k: 1318518	n:1540000
NOL8   1540000 perm   1233 sec   (1249 perm/sec)   p_kst 8.561805e-01   p_cons 8.201299e-04   p_joint 1.785065e-03

Joint ci ratio: 7.441451e-02	ci left: 1.720582e-03	ci right 1.854194e-03	k: 2769	n:1550000
Cons ci ratio: 1.096507e-01	ci left: 7.786879e-04	ci right 8.696455e-04	k: 1276	n:1550000
KS ci ratio: 1.290192e-03	ci left: 8.556796e-01	ci right 8.567849e-01	k: 1327161	n:1550000
NOL8   1550000 perm   1247 sec   (1243 perm/sec)   p_kst 8.562329e-01   p_cons 8.232258e-04   p_joint 1.786452e-03

Joint ci ratio: 7.421391e-02	ci left: 1.718989e-03	ci right 1.852102e-03	k: 2784	n:1560000
Cons ci ratio: 1.094368e-01	ci left: 7.768136e-04	ci right 8.673638e-04	k: 1281	n:1560000
KS ci ratio: 1.286135e-03	ci left: 8.556651e-01	ci right 8.567669e-01	k: 1335698	n:1560000
NOL8   1560000 perm   1261 sec   (1237 perm/sec)   p_kst 8.562167e-01   p_cons 8.211538e-04   p_joint 1.784615e-03

Joint ci ratio: 7.400169e-02	ci left: 1.718042e-03	ci right 1.850685e-03	k: 2800	n:1570000
Cons ci ratio: 1.091817e-01	ci left: 7.755829e-04	ci right 8.657654e-04	k: 1287	n:1570000
KS ci ratio: 1.282046e-03	ci left: 8.556642e-01	ci right 8.567625e-01	k: 1344256	n:1570000
NOL8   1570000 perm   1275 sec   (1231 perm/sec)   p_kst 8.562140e-01   p_cons 8.197452e-04   p_joint 1.783439e-03

Joint ci ratio: 7.384381e-02	ci left: 1.714623e-03	ci right 1.846708e-03	k: 2812	n:1580000
Cons ci ratio: 1.090127e-01	ci left: 7.731366e-04	ci right 8.628866e-04	k: 1291	n:1580000
KS ci ratio: 1.277957e-03	ci left: 8.556709e-01	ci right 8.567657e-01	k: 1352826	n:1580000
NOL8   1580000 perm   1289 sec   (1226 perm/sec)   p_kst 8.562190e-01   p_cons 8.170886e-04   p_joint 1.779747e-03

Joint ci ratio: 7.364778e-02	ci left: 1.713099e-03	ci right 1.844701e-03	k: 2827	n:1590000
Cons ci ratio: 1.087186e-01	ci left: 7.725568e-04	ci right 8.619820e-04	k: 1298	n:1590000
KS ci ratio: 1.274020e-03	ci left: 8.556555e-01	ci right 8.567470e-01	k: 1361361	n:1590000
NOL8   1590000 perm   1303 sec   (1220 perm/sec)   p_kst 8.562019e-01   p_cons 8.163522e-04   p_joint 1.777987e-03

Joint ci ratio: 7.349216e-02	ci left: 1.709754e-03	ci right 1.840810e-03	k: 2839	n:1600000
Cons ci ratio: 1.085101e-01	ci left: 7.707684e-04	ci right 8.598045e-04	k: 1303	n:1600000
KS ci ratio: 1.270143e-03	ci left: 8.556359e-01	ci right 8.567240e-01	k: 1369889	n:1600000
NOL8   1600000 perm   1317 sec   (1214 perm/sec)   p_kst 8.561806e-01   p_cons 8.143750e-04   p_joint 1.774375e-03

Joint ci ratio: 7.317064e-02	ci left: 1.714378e-03	ci right 1.845189e-03	k: 2864	n:1610000
Cons ci ratio: 1.079320e-01	ci left: 7.744413e-04	ci right 8.633949e-04	k: 1317	n:1610000
KS ci ratio: 1.266335e-03	ci left: 8.556098e-01	ci right 8.566945e-01	k: 1378406	n:1610000
NOL8   1610000 perm   1331 sec   (1209 perm/sec)   p_kst 8.561528e-01   p_cons 8.180124e-04   p_joint 1.778882e-03

Joint ci ratio: 7.291653e-02	ci left: 1.715916e-03	ci right 1.846370e-03	k: 2884	n:1620000
Cons ci ratio: 1.074843e-01	ci left: 7.762681e-04	ci right 8.650383e-04	k: 1328	n:1620000
KS ci ratio: 1.262207e-03	ci left: 8.556532e-01	ci right 8.567345e-01	k: 1387035	n:1620000
NOL8   1620000 perm   1346 sec   (1204 perm/sec)   p_kst 8.561944e-01   p_cons 8.197531e-04   p_joint 1.780247e-03

Joint ci ratio: 7.265251e-02	ci left: 1.718038e-03	ci right 1.848160e-03	k: 2905	n:1630000
Cons ci ratio: 1.070822e-01	ci left: 7.774761e-04	ci right 8.660308e-04	k: 1338	n:1630000
KS ci ratio: 1.258564e-03	ci left: 8.556088e-01	ci right 8.566869e-01	k: 1395522	n:1630000
NOL8   1630000 perm   1360 sec   (1199 perm/sec)   p_kst 8.561485e-01   p_cons 8.208589e-04   p_joint 1.782209e-03

Joint ci ratio: 7.249066e-02	ci left: 1.715345e-03	ci right 1.844962e-03	k: 2918	n:1640000
Cons ci ratio: 1.067241e-01	ci left: 7.780765e-04	ci right 8.663846e-04	k: 1347	n:1640000
KS ci ratio: 1.254645e-03	ci left: 8.556254e-01	ci right 8.567002e-01	k: 1404108	n:1640000
NOL8   1640000 perm   1374 sec   (1194 perm/sec)   p_kst 8.561634e-01   p_cons 8.213415e-04   p_joint 1.779268e-03

Joint ci ratio: 7.236698e-02	ci left: 1.710899e-03	ci right 1.839950e-03	k: 2928	n:1650000
Cons ci ratio: 1.065662e-01	ci left: 7.757204e-04	ci right 8.636227e-04	k: 1351	n:1650000
KS ci ratio: 1.250996e-03	ci left: 8.555957e-01	ci right 8.566673e-01	k: 1412618	n:1650000
NOL8   1650000 perm   1389 sec   (1188 perm/sec)   p_kst 8.561321e-01   p_cons 8.187879e-04   p_joint 1.774545e-03

Joint ci ratio: 7.209663e-02	ci left: 1.713606e-03	ci right 1.842359e-03	k: 2950	n:1660000
Cons ci ratio: 1.060185e-01	ci left: 7.792570e-04	ci right 8.670779e-04	k: 1365	n:1660000
KS ci ratio: 1.247422e-03	ci left: 8.555579e-01	ci right 8.566264e-01	k: 1421114	n:1660000
NOL8   1660000 perm   1404 sec   (1183 perm/sec)   p_kst 8.560928e-01   p_cons 8.222892e-04   p_joint 1.777108e-03

Joint ci ratio: 7.190201e-02	ci left: 1.712754e-03	ci right 1.841080e-03	k: 2966	n:1670000
Cons ci ratio: 1.058251e-01	ci left: 7.775054e-04	ci right 8.649592e-04	k: 1370	n:1670000
KS ci ratio: 1.243627e-03	ci left: 8.555703e-01	ci right 8.566356e-01	k: 1429693	n:1670000
NOL8   1670000 perm   1418 sec   (1178 perm/sec)   p_kst 8.561036e-01   p_cons 8.203593e-04   p_joint 1.776048e-03

Joint ci ratio: 7.179339e-02	ci left: 1.707819e-03	ci right 1.835575e-03	k: 2975	n:1680000
Cons ci ratio: 1.055944e-01	ci left: 7.763544e-04	ci right 8.634765e-04	k: 1376	n:1680000
KS ci ratio: 1.239995e-03	ci left: 8.555570e-01	ci right 8.566191e-01	k: 1438229	n:1680000
NOL8   1680000 perm   1433 sec   (1173 perm/sec)   p_kst 8.560887e-01   p_cons 8.190476e-04   p_joint 1.770833e-03

Joint ci ratio: 7.156528e-02	ci left: 1.708755e-03	ci right 1.836157e-03	k: 2994	n:1690000
Cons ci ratio: 1.052510e-01	ci left: 7.769456e-04	ci right 8.638329e-04	k: 1385	n:1690000
KS ci ratio: 1.236300e-03	ci left: 8.555628e-01	ci right 8.566218e-01	k: 1446797	n:1690000
NOL8   1690000 perm   1448 sec   (1168 perm/sec)   p_kst 8.560929e-01   p_cons 8.195266e-04   p_joint 1.771598e-03

Joint ci ratio: 7.142246e-02	ci left: 1.705636e-03	ci right 1.832541e-03	k: 3006	n:1700000
Cons ci ratio: 1.050240e-01	ci left: 7.758119e-04	ci right 8.623738e-04	k: 1391	n:1700000
KS ci ratio: 1.232652e-03	ci left: 8.555656e-01	ci right 8.566214e-01	k: 1455360	n:1700000
NOL8   1700000 perm   1462 sec   (1163 perm/sec)   p_kst 8.560941e-01   p_cons 8.182353e-04   p_joint 1.768235e-03

Joint ci ratio: 7.118607e-02	ci left: 1.707149e-03	ci right 1.833729e-03	k: 3026	n:1710000
Cons ci ratio: 1.046114e-01	ci left: 7.775392e-04	ci right 8.639319e-04	k: 1402	n:1710000
KS ci ratio: 1.229042e-03	ci left: 8.555672e-01	ci right 8.566199e-01	k: 1463921	n:1710000
NOL8   1710000 perm   1477 sec   (1158 perm/sec)   p_kst 8.560942e-01   p_cons 8.198830e-04   p_joint 1.769591e-03

Joint ci ratio: 7.096367e-02	ci left: 1.708074e-03	ci right 1.834311e-03	k: 3045	n:1720000
Cons ci ratio: 1.043144e-01	ci left: 7.775482e-04	ci right 8.636817e-04	k: 1410	n:1720000
KS ci ratio: 1.225513e-03	ci left: 8.555589e-01	ci right 8.566086e-01	k: 1472465	n:1720000
NOL8   1720000 perm   1492 sec   (1153 perm/sec)   p_kst 8.560843e-01   p_cons 8.197674e-04   p_joint 1.770349e-03

Joint ci ratio: 7.074335e-02	ci left: 1.708989e-03	ci right 1.834885e-03	k: 3064	n:1730000
Cons ci ratio: 1.039466e-01	ci left: 7.786836e-04	ci right 8.646202e-04	k: 1420	n:1730000
KS ci ratio: 1.221817e-03	ci left: 8.555906e-01	ci right 8.566371e-01	k: 1481078	n:1730000
NOL8   1730000 perm   1507 sec   (1148 perm/sec)   p_kst 8.561145e-01   p_cons 8.208092e-04   p_joint 1.771098e-03

Joint ci ratio: 7.060539e-02	ci left: 1.705942e-03	ci right 1.831358e-03	k: 3076	n:1740000
Cons ci ratio: 1.038372e-01	ci left: 7.758877e-04	ci right 8.614201e-04	k: 1423	n:1740000
KS ci ratio: 1.218182e-03	ci left: 8.556162e-01	ci right 8.566597e-01	k: 1489681	n:1740000
NOL8   1740000 perm   1522 sec   (1143 perm/sec)   p_kst 8.561385e-01   p_cons 8.178161e-04   p_joint 1.767816e-03

Joint ci ratio: 7.041117e-02	ci left: 1.705736e-03	ci right 1.830779e-03	k: 3093	n:1750000
Cons ci ratio: 1.035830e-01	ci left: 7.753502e-04	ci right 8.606014e-04	k: 1430	n:1750000
KS ci ratio: 1.214717e-03	ci left: 8.556134e-01	ci right 8.566540e-01	k: 1498235	n:1750000
NOL8   1750000 perm   1537 sec   (1138 perm/sec)   p_kst 8.561343e-01   p_cons 8.171429e-04   p_joint 1.767429e-03

Joint ci ratio: 7.027513e-02	ci left: 1.702743e-03	ci right 1.827315e-03	k: 3105	n:1760000
Cons ci ratio: 1.033666e-01	ci left: 7.742657e-04	ci right 8.592089e-04	k: 1436	n:1760000
KS ci ratio: 1.211377e-03	ci left: 8.555914e-01	ci right 8.566290e-01	k: 1506755	n:1760000
NOL8   1760000 perm   1553 sec   (1134 perm/sec)   p_kst 8.561108e-01   p_cons 8.159091e-04   p_joint 1.764205e-03

Joint ci ratio: 7.002748e-02	ci left: 1.705334e-03	ci right 1.829638e-03	k: 3127	n:1770000
Cons ci ratio: 1.031158e-01	ci left: 7.737440e-04	ci right 8.584115e-04	k: 1443	n:1770000
KS ci ratio: 1.207784e-03	ci left: 8.556268e-01	ci right 8.566613e-01	k: 1515376	n:1770000
NOL8   1770000 perm   1568 sec   (1129 perm/sec)   p_kst 8.561446e-01   p_cons 8.152542e-04   p_joint 1.766667e-03

Joint ci ratio: 6.982685e-02	ci left: 1.705689e-03	ci right 1.829649e-03	k: 3145	n:1780000
Cons ci ratio: 1.028668e-01	ci left: 7.732284e-04	ci right 8.576229e-04	k: 1450	n:1780000
KS ci ratio: 1.204487e-03	ci left: 8.556077e-01	ci right 8.566394e-01	k: 1523901	n:1780000
NOL8   1780000 perm   1584 sec   (1124 perm/sec)   p_kst 8.561242e-01   p_cons 8.146067e-04   p_joint 1.766854e-03

Joint ci ratio: 6.966103e-02	ci left: 1.704394e-03	ci right 1.827953e-03	k: 3160	n:1790000
Cons ci ratio: 1.026196e-01	ci left: 7.727188e-04	ci right 8.568427e-04	k: 1457	n:1790000
KS ci ratio: 1.201126e-03	ci left: 8.556073e-01	ci right 8.566362e-01	k: 1532459	n:1790000
NOL8   1790000 perm   1599 sec   (1119 perm/sec)   p_kst 8.561223e-01   p_cons 8.139665e-04   p_joint 1.765363e-03

Joint ci ratio: 6.947448e-02	ci left: 1.704205e-03	ci right 1.827407e-03	k: 3177	n:1800000
Cons ci ratio: 1.024091e-01	ci left: 7.716738e-04	ci right 8.555013e-04	k: 1463	n:1800000
KS ci ratio: 1.197721e-03	ci left: 8.556220e-01	ci right 8.566480e-01	k: 1541044	n:1800000
NOL8   1800000 perm   1615 sec   (1115 perm/sec)   p_kst 8.561356e-01   p_cons 8.127778e-04   p_joint 1.765000e-03

Joint ci ratio: 6.928941e-02	ci left: 1.704019e-03	ci right 1.826866e-03	k: 3194	n:1810000
Cons ci ratio: 1.021652e-01	ci left: 7.711788e-04	ci right 8.547411e-04	k: 1470	n:1810000
KS ci ratio: 1.194443e-03	ci left: 8.556160e-01	ci right 8.566392e-01	k: 1549592	n:1810000
NOL8   1810000 perm   1631 sec   (1110 perm/sec)   p_kst 8.561282e-01   p_cons 8.121547e-04   p_joint 1.764641e-03

Joint ci ratio: 6.910582e-02	ci left: 1.703835e-03	ci right 1.826330e-03	k: 3211	n:1820000
Cons ci ratio: 1.019576e-01	ci left: 7.701541e-04	ci right 8.534256e-04	k: 1476	n:1820000
KS ci ratio: 1.191137e-03	ci left: 8.556217e-01	ci right 8.566420e-01	k: 1558161	n:1820000
NOL8   1820000 perm   1646 sec   (1105 perm/sec)   p_kst 8.561324e-01   p_cons 8.109890e-04   p_joint 1.764286e-03

Joint ci ratio: 6.882765e-02	ci left: 1.708488e-03	ci right 1.830803e-03	k: 3237	n:1830000
Cons ci ratio: 1.015117e-01	ci left: 7.728687e-04	ci right 8.560465e-04	k: 1489	n:1830000
KS ci ratio: 1.187713e-03	ci left: 8.556574e-01	ci right 8.566748e-01	k: 1566785	n:1830000
NOL8   1830000 perm   1662 sec   (1101 perm/sec)   p_kst 8.561667e-01   p_cons 8.136612e-04   p_joint 1.768852e-03

Joint ci ratio: 6.864770e-02	ci left: 1.708283e-03	ci right 1.830251e-03	k: 3254	n:1840000
Cons ci ratio: 1.013080e-01	ci left: 7.718465e-04	ci right 8.547376e-04	k: 1495	n:1840000
KS ci ratio: 1.184556e-03	ci left: 8.556432e-01	ci right 8.566579e-01	k: 1575318	n:1840000
NOL8   1840000 perm   1678 sec   (1096 perm/sec)   p_kst 8.561511e-01   p_cons 8.125000e-04   p_joint 1.768478e-03

Joint ci ratio: 6.844819e-02	ci left: 1.709143e-03	ci right 1.830804e-03	k: 3273	n:1850000
Cons ci ratio: 1.009375e-01	ci left: 7.734700e-04	ci right 8.562137e-04	k: 1506	n:1850000
KS ci ratio: 1.181201e-03	ci left: 8.556757e-01	ci right 8.566875e-01	k: 1583937	n:1850000
NOL8   1850000 perm   1694 sec   (1092 perm/sec)   p_kst 8.561822e-01   p_cons 8.140541e-04   p_joint 1.769189e-03

Joint ci ratio: 6.820893e-02	ci left: 1.712108e-03	ci right 1.833537e-03	k: 3296	n:1860000
Cons ci ratio: 1.004717e-01	ci left: 7.766489e-04	ci right 8.593267e-04	k: 1520	n:1860000
KS ci ratio: 1.178088e-03	ci left: 8.556631e-01	ci right 8.566723e-01	k: 1592473	n:1860000
NOL8   1860000 perm   1710 sec   (1088 perm/sec)   p_kst 8.561683e-01   p_cons 8.172043e-04   p_joint 1.772043e-03

Joint ci ratio: 6.801321e-02	ci left: 1.712940e-03	ci right 1.834066e-03	k: 3315	n:1870000
Cons ci ratio: 1.001430e-01	ci left: 7.777092e-04	ci right 8.602130e-04	k: 1530	n:1870000
KS ci ratio: 1.174938e-03	ci left: 8.556636e-01	ci right 8.566701e-01	k: 1601033	n:1870000
NOL8   1870000 perm   1726 sec   (1084 perm/sec)   p_kst 8.561674e-01   p_cons 8.181818e-04   p_joint 1.772727e-03

Joint ci ratio: 6.781917e-02	ci left: 1.713764e-03	ci right 1.834588e-03	k: 3334	n:1880000
Cons ci ratio: 9.981747e-02	ci left: 7.787586e-04	ci right 8.610895e-04	k: 1540	n:1880000
KS ci ratio: 1.171730e-03	ci left: 8.556816e-01	ci right 8.566854e-01	k: 1609626	n:1880000
NOL8   1880000 perm   1742 sec   (1079 perm/sec)   p_kst 8.561840e-01   p_cons 8.191489e-04   p_joint 1.773404e-03

Outputting figure to mutsig2_images.part000000000116/NOL8.2_3568_1880000_0.85618_0.00081915_0.0017734.png
                gene_name: NOL8
               theta_stop: 0.100 
                    nperm: 1880000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.00082 
      ci_cons_bounds_left: 0.00078 
     ci_cons_bounds_right: 0.00086 
                  p_joint: 0.0018 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 77 percent done.
NOLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
NOLC1   10000 perm   2 sec   (6407 perm/sec)   p_kst 1.951000e-01   p_cons 3.109000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000116/NOLC1.2_2152_10000_0.1951_0.3109_0.4114.png
                gene_name: NOLC1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 78 percent done.
NONO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
KS ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
NONO   10000 perm   2 sec   (6326 perm/sec)   p_kst 9.498000e-01   p_cons 6.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NONO.2_1456_10000_0.9498_0.6532_1.png
                gene_name: NONO
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NOP58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 1.466295e-02	ci left: 8.707094e-01	ci right 8.836699e-01	k: 8773	n:10000
KS ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
NOP58   10000 perm   2 sec   (6650 perm/sec)   p_kst 1.990000e-01   p_cons 8.773000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000116/NOP58.2_1650_10000_0.199_0.8773_0.7053.png
                gene_name: NOP58
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 82 percent done.
NOS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
Cons ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
KS ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
NOS3   10000 perm   2 sec   (5350 perm/sec)   p_kst 3.867000e-01   p_cons 1.497000e-01   p_joint 2.220000e-01

Outputting figure to mutsig2_images.part000000000116/NOS3.2_3998_10000_0.3867_0.1497_0.222.png
                gene_name: NOS3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 83 percent done.
NOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
Cons ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
KS ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
NOXA1   10000 perm   2 sec   (6192 perm/sec)   p_kst 4.436000e-01   p_cons 9.010000e-02   p_joint 1.706000e-01

Joint ci ratio: 6.676976e-02	ci left: 1.420697e-01	ci right 1.519332e-01	k: 2939	n:20000
Cons ci ratio: 8.661282e-02	ci left: 8.886219e-02	ci right 9.695661e-02	k: 1857	n:20000
KS ci ratio: 3.076553e-02	ci left: 4.410910e-01	ci right 4.549241e-01	k: 8960	n:20000
NOXA1   20000 perm   4 sec   (5503 perm/sec)   p_kst 4.480000e-01   p_cons 9.285000e-02   p_joint 1.469500e-01

Outputting figure to mutsig2_images.part000000000116/NOXA1.2_1508_20000_0.448_0.09285_0.14695.png
                gene_name: NOXA1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
NPBWR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
Cons ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
KS ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
NPBWR2   10000 perm   2 sec   (6627 perm/sec)   p_kst 3.151000e-01   p_cons 6.820000e-02   p_joint 3.051000e-01

Joint ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
Cons ci ratio: 1.026971e-01	ci left: 6.440262e-02	ci right 7.142363e-02	k: 1357	n:20000
KS ci ratio: 4.105588e-02	ci left: 3.066256e-01	ci right 3.195287e-01	k: 6261	n:20000
NPBWR2   20000 perm   3 sec   (5825 perm/sec)   p_kst 3.130500e-01   p_cons 6.785000e-02   p_joint 9.415000e-02

Joint ci ratio: 6.602811e-02	ci left: 1.016513e-01	ci right 1.086254e-01	k: 3153	n:30000
Cons ci ratio: 8.296020e-02	ci left: 6.638595e-02	ci right 7.216447e-02	k: 2077	n:30000
KS ci ratio: 3.347272e-02	ci left: 3.084511e-01	ci right 3.189850e-01	k: 9411	n:30000
NPBWR2   30000 perm   5 sec   (5537 perm/sec)   p_kst 3.137000e-01   p_cons 6.923333e-02   p_joint 1.051000e-01

Outputting figure to mutsig2_images.part000000000116/NPBWR2.2_1005_30000_0.3137_0.069233_0.1051.png
                gene_name: NPBWR2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 86 percent done.
NPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
KS ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
NPC2   10000 perm   1 sec   (6847 perm/sec)   p_kst 4.990000e-02   p_cons 4.032000e-01   p_joint 8.190000e-02

Joint ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
Cons ci ratio: 3.600713e-02	ci left: 3.653452e-01	ci right 3.787920e-01	k: 7441	n:20000
KS ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
NPC2   20000 perm   3 sec   (6034 perm/sec)   p_kst 5.125000e-02   p_cons 3.720500e-01   p_joint 8.265000e-02

Joint ci ratio: 7.504489e-02	ci left: 8.022958e-02	ci right 8.651804e-02	k: 2500	n:30000
Cons ci ratio: 2.942483e-02	ci left: 3.661943e-01	ci right 3.771639e-01	k: 11150	n:30000
KS ci ratio: 9.742521e-02	ci left: 4.870025e-02	ci right 5.372045e-02	k: 1535	n:30000
NPC2   30000 perm   5 sec   (5723 perm/sec)   p_kst 5.116667e-02   p_cons 3.716667e-01   p_joint 8.333333e-02

Outputting figure to mutsig2_images.part000000000116/NPC2.2_476_30000_0.051167_0.37167_0.083333.png
                gene_name: NPC2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 88 percent done.
NPEPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
NPEPL1   10000 perm   2 sec   (6297 perm/sec)   p_kst 2.906000e-01   p_cons 1.522000e-01   p_joint 4.484000e-01

Outputting figure to mutsig2_images.part000000000116/NPEPL1.2_1466_10000_0.2906_0.1522_0.4484.png
                gene_name: NPEPL1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 89 percent done.
NPHP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
Cons ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
KS ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
NPHP3   10000 perm   2 sec   (5329 perm/sec)   p_kst 4.016000e-01   p_cons 2.826000e-01   p_joint 5.370000e-01

Outputting figure to mutsig2_images.part000000000116/NPHP3.2_4101_10000_0.4016_0.2826_0.537.png
                gene_name: NPHP3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 91 percent done.
NPIP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 92 percent done.
NPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
Cons ci ratio: 4.189710e-03	ci left: 9.865389e-01	ci right 9.907693e-01	k: 9888	n:10000
KS ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
NPM1   10000 perm   1 sec   (6710 perm/sec)   p_kst 6.390000e-02   p_cons 9.888000e-01   p_joint 1.526000e-01

Joint ci ratio: 4.879688e-02	ci left: 2.379610e-01	ci right 2.499135e-01	k: 4878	n:20000
Cons ci ratio: 2.922905e-03	ci left: 9.875094e-01	ci right 9.904458e-01	k: 19781	n:20000
KS ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
NPM1   20000 perm   3 sec   (5911 perm/sec)   p_kst 6.250000e-02   p_cons 9.890500e-01   p_joint 2.439000e-01

Joint ci ratio: 2.421127e-02	ci left: 4.606418e-01	ci right 4.719648e-01	k: 13989	n:30000
Cons ci ratio: 2.360915e-03	ci left: 9.880354e-01	ci right 9.904018e-01	k: 29678	n:30000
KS ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
NPM1   30000 perm   5 sec   (5612 perm/sec)   p_kst 5.993333e-02   p_cons 9.892667e-01   p_joint 4.663000e-01

Outputting figure to mutsig2_images.part000000000116/NPM1.2_942_30000_0.059933_0.98927_0.4663.png
                gene_name: NPM1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 94 percent done.
NPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175938e-02	ci left: 9.119352e-01	ci right 9.228202e-01	k: 9175	n:10000
Cons ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
KS ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
NPR2   10000 perm   2 sec   (5849 perm/sec)   p_kst 4.015000e-01   p_cons 6.468000e-01   p_joint 9.175000e-01

Outputting figure to mutsig2_images.part000000000116/NPR2.2_3232_10000_0.4015_0.6468_0.9175.png
                gene_name: NPR2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 95 percent done.
NPTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
Cons ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
NPTX1   10000 perm   2 sec   (6511 perm/sec)   p_kst 2.114000e-01   p_cons 1.410000e-02   p_joint 3.130000e-02

Joint ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
Cons ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
KS ci ratio: 5.429354e-02	ci left: 2.011059e-01	ci right 2.123795e-01	k: 4134	n:20000
NPTX1   20000 perm   3 sec   (5746 perm/sec)   p_kst 2.067000e-01   p_cons 1.360000e-02   p_joint 2.425000e-02

Joint ci ratio: 1.281039e-01	ci left: 2.832467e-02	ci right 3.223367e-02	k: 907	n:30000
Cons ci ratio: 1.915552e-01	ci left: 1.244696e-02	ci right 1.511510e-02	k: 412	n:30000
KS ci ratio: 4.446853e-02	ci left: 2.011380e-01	ci right 2.103191e-01	k: 6171	n:30000
NPTX1   30000 perm   5 sec   (5473 perm/sec)   p_kst 2.057000e-01   p_cons 1.373333e-02   p_joint 3.023333e-02

Joint ci ratio: 1.549399e-01	ci left: 1.452856e-02	ci right 1.699247e-02	k: 629	n:40000
Cons ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
KS ci ratio: 3.856209e-02	ci left: 2.013258e-01	ci right 2.092670e-01	k: 8211	n:40000
NPTX1   40000 perm   8 sec   (5270 perm/sec)   p_kst 2.052750e-01   p_cons 1.450000e-02   p_joint 1.572500e-02

Joint ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
Cons ci ratio: 1.468011e-01	ci left: 1.302701e-02	ci right 1.510997e-02	k: 702	n:50000
KS ci ratio: 3.452700e-02	ci left: 2.014091e-01	ci right 2.085052e-01	k: 10247	n:50000
NPTX1   50000 perm   10 sec   (5043 perm/sec)   p_kst 2.049400e-01   p_cons 1.404000e-02   p_joint 1.604000e-02

Joint ci ratio: 1.259678e-01	ci left: 1.488193e-02	ci right 1.689862e-02	k: 952	n:60000
Cons ci ratio: 1.351197e-01	ci left: 1.289789e-02	ci right 1.478290e-02	k: 829	n:60000
KS ci ratio: 3.142970e-02	ci left: 2.026373e-01	ci right 2.091245e-01	k: 12352	n:60000
NPTX1   60000 perm   12 sec   (4933 perm/sec)   p_kst 2.058667e-01   p_cons 1.381667e-02   p_joint 1.586667e-02

Joint ci ratio: 1.031875e-01	ci left: 1.915667e-02	ci right 2.125479e-02	k: 1413	n:70000
Cons ci ratio: 1.246622e-01	ci left: 1.305960e-02	ci right 1.480960e-02	k: 974	n:70000
KS ci ratio: 2.903844e-02	ci left: 2.035490e-01	ci right 2.095611e-01	k: 14458	n:70000
NPTX1   70000 perm   14 sec   (4832 perm/sec)   p_kst 2.065429e-01   p_cons 1.391429e-02   p_joint 2.018571e-02

Joint ci ratio: 7.608761e-02	ci left: 3.088930e-02	ci right 3.334478e-02	k: 2568	n:80000
Cons ci ratio: 1.166792e-01	ci left: 1.310013e-02	ci right 1.473540e-02	k: 1112	n:80000
KS ci ratio: 2.715840e-02	ci left: 2.037989e-01	ci right 2.094224e-01	k: 16528	n:80000
NPTX1   80000 perm   17 sec   (4738 perm/sec)   p_kst 2.066000e-01   p_cons 1.390000e-02   p_joint 3.210000e-02

Joint ci ratio: 7.809379e-02	ci left: 2.616877e-02	ci right 2.830629e-02	k: 2450	n:90000
Cons ci ratio: 1.102353e-01	ci left: 1.309121e-02	ci right 1.462924e-02	k: 1246	n:90000
KS ci ratio: 2.556199e-02	ci left: 2.045118e-01	ci right 2.098182e-01	k: 18644	n:90000
NPTX1   90000 perm   19 sec   (4650 perm/sec)   p_kst 2.071556e-01   p_cons 1.384444e-02   p_joint 2.722222e-02

Joint ci ratio: 9.885776e-02	ci left: 1.471417e-02	ci right 1.625412e-02	k: 1547	n:100000
Cons ci ratio: 1.046764e-01	ci left: 1.310556e-02	ci right 1.456284e-02	k: 1382	n:100000
KS ci ratio: 2.432034e-02	ci left: 2.037060e-01	ci right 2.087311e-01	k: 20621	n:100000
NPTX1   100000 perm   22 sec   (4564 perm/sec)   p_kst 2.062100e-01   p_cons 1.382000e-02   p_joint 1.547000e-02

Joint ci ratio: 9.394389e-02	ci left: 1.484929e-02	ci right 1.632187e-02	k: 1713	n:110000
Cons ci ratio: 1.004193e-01	ci left: 1.297703e-02	ci right 1.435787e-02	k: 1502	n:110000
KS ci ratio: 2.315652e-02	ci left: 2.042740e-01	ci right 2.090687e-01	k: 22733	n:110000
NPTX1   110000 perm   25 sec   (4480 perm/sec)   p_kst 2.066636e-01   p_cons 1.365455e-02   p_joint 1.557273e-02

Joint ci ratio: 8.972095e-02	ci left: 1.495531e-02	ci right 1.636824e-02	k: 1878	n:120000
Cons ci ratio: 9.634206e-02	ci left: 1.295229e-02	ci right 1.427137e-02	k: 1632	n:120000
KS ci ratio: 2.217054e-02	ci left: 2.043786e-01	ci right 2.089689e-01	k: 24800	n:120000
NPTX1   120000 perm   27 sec   (4395 perm/sec)   p_kst 2.066667e-01   p_cons 1.360000e-02   p_joint 1.565000e-02

Outputting figure to mutsig2_images.part000000000116/NPTX1.2_1319_120000_0.20667_0.0136_0.01565.png
                gene_name: NPTX1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 97 percent done.
NPTXR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
Cons ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
NPTXR   10000 perm   2 sec   (6418 perm/sec)   p_kst 3.520000e-01   p_cons 2.811000e-01   p_joint 4.513000e-01

Outputting figure to mutsig2_images.part000000000116/NPTXR.2_1523_10000_0.352_0.2811_0.4513.png
                gene_name: NPTXR
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 98 percent done.
NQO2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000116
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 116 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 4422240: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000117> was used as the working directory.
Started at Wed Oct 24 18:01:10 2012
Results reported at Wed Oct 24 21:24:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000117.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000117.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 117  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000117.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11372.18 sec.
    Max Memory :      5343 MB
    Max Swap   :      7982 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
117
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 117
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 117: processing genes 10496 - 10585
Calculating significance of each gene.
Using projection method.
10496	NR0B2	6.652823e-01
10497	NR1D1	6.896016e-01
10498	NR1D2	9.719532e-01
10499	NR1H2	5.449206e-01
10500	NR1H3	3.014422e-01
10501	NR1H4	1
10502	NR1I2	9.163332e-01
10503	NR1I3	4.460851e-01
10504	NR2C1	8.901722e-01
10505	NR2C2	9.084987e-01
10506	NR2C2AP	1
10507	NR2E1	2.435407e-01
10508	NR2E3	6.836400e-01
10509	NR2F1	1
10510	NR2F2	7.232803e-01
10511	NR2F6	1
10512	NR3C1	8.061683e-01
10513	NR3C2	7.081291e-01
10514	NR4A1	8.994469e-01
10515	NR4A2	1.350571e-01
10516	NR4A3	8.384988e-01
10517	NR5A1	5.529941e-01
10518	NR5A2	1
10519	NR6A1	5.153413e-01
10520	NRAP	3.027911e-01
10521	NRARP	1
10522	NRAS	1.606970e-02
10523	NRBF2	7.942716e-01
In gene NRBP1 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 1676    n = 1	mu =   4.02e-07
10524	NRBP1	7.459305e-01
10525	NRBP2	1
10526	NRCAM	1.304166e-01
10527	NRD1	9.328810e-01
10528	NRF1	6.686232e-01
10529	NRG1	9.022455e-01
10530	NRG2	1
10531	NRG3	1.533701e-05
10532	NRG4	4.654308e-01
10533	NRGN	1
10534	NRIP1	2.997322e-01
10535	NRIP2	7.477568e-01
10536	NRIP3	5.656976e-01
10537	NRK	6.812982e-02
10538	NRL	5.765130e-01
10539	NRM	4.373417e-01
10540	NRN1	1
10541	NRN1L	5.619491e-01
10542	NRP1	9.929815e-01
In gene NRP2 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 3176    n = 1	mu =   5.35e-07
10543	NRP2	7.783127e-02
10544	NRSN1	1
10545	NRSN2	2.765698e-01
10546	NRTN	1
10547	NRXN1	2.073419e-04
10548	NRXN2	9.746428e-01
10549	NRXN3	9.010080e-01
10550	NSA2	1
10551	NSD1	9.925360e-01
10552	NSDHL	3.270877e-01
10553	NSF	3.932122e-01
10554	NSFL1C	8.543250e-01
10555	NSL1	1
10556	NSMAF	9.493682e-01
10557	NSMCE1	1
10558	NSMCE2	7.324328e-01
10559	NSMCE4A	5.261880e-01
10560	NSUN2	5.164161e-02
10561	NSUN3	4.425978e-01
10562	NSUN4	1
10563	NSUN5	1
10564	NSUN6	6.238908e-01
10565	NSUN7	9.313615e-01
10566	NT5C	1
10567	NT5C1A	6.786557e-01
10568	NT5C1B	1
10569	NT5C2	9.006976e-01
10570	NT5C3	1
10571	NT5C3L	6.890195e-01
10572	NT5DC1	1
10573	NT5DC2	9.824125e-01
10574	NT5DC3	3.224996e-01
10575	NT5E	8.596033e-01
10576	NT5M	7.484255e-01
10577	NTAN1	1
10578	NTF3	2.125095e-01
10579	NTF4	1.412146e-01
10580	NTHL1	1
10581	NTM	7.892921e-03
10582	NTN1	8.574939e-01
10583	NTN3	1
10584	NTN4	2.287881e-01
10585	NTN5	1
Done

Running MutSig 2:
Scatter job 117: processing genes 10496 - 10585
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NRXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
NRXN1   10000 perm   3 sec   (3331 perm/sec)   p_kst 5.120000e-02   p_cons 1.072000e-01   p_joint 3.500000e-02

Joint ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
Cons ci ratio: 6.911550e-02	ci left: 1.337406e-01	ci right 1.433648e-01	k: 2770	n:20000
KS ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
NRXN1   20000 perm   8 sec   (2363 perm/sec)   p_kst 5.415000e-02   p_cons 1.385000e-01   p_joint 4.540000e-02

Joint ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
Cons ci ratio: 5.642107e-02	ci left: 1.346756e-01	ci right 1.425279e-01	k: 4157	n:30000
KS ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
NRXN1   30000 perm   12 sec   (2525 perm/sec)   p_kst 5.870000e-02   p_cons 1.385667e-01   p_joint 5.450000e-02

Outputting figure to mutsig2_images.part000000000117/NRXN1.48_4999_30000_0.0587_0.13857_0.0545.png
                gene_name: NRXN1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 2 percent done.
NRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
Cons ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
KS ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
NRAP   10000 perm   2 sec   (4049 perm/sec)   p_kst 9.640000e-01   p_cons 2.670000e-02   p_joint 1.654000e-01

Joint ci ratio: 6.491661e-02	ci left: 1.491711e-01	ci right 1.592296e-01	k: 3083	n:20000
Cons ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
KS ci ratio: 5.515863e-03	ci left: 9.592055e-01	ci right 9.645591e-01	k: 19239	n:20000
NRAP   20000 perm   5 sec   (3825 perm/sec)   p_kst 9.619500e-01   p_cons 3.145000e-02   p_joint 1.541500e-01

Joint ci ratio: 5.523908e-02	ci left: 1.397485e-01	ci right 1.477206e-01	k: 4311	n:30000
Cons ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
KS ci ratio: 4.462750e-03	ci left: 9.603910e-01	ci right 9.647188e-01	k: 28878	n:30000
NRAP   30000 perm   8 sec   (3729 perm/sec)   p_kst 9.626000e-01   p_cons 3.083333e-02   p_joint 1.437000e-01

Joint ci ratio: 4.596503e-02	ci left: 1.503021e-01	ci right 1.573982e-01	k: 6153	n:40000
Cons ci ratio: 1.099928e-01	ci left: 2.907980e-02	ci right 3.248877e-02	k: 1230	n:40000
KS ci ratio: 3.837591e-03	ci left: 9.612061e-01	ci right 9.649262e-01	k: 38524	n:40000
NRAP   40000 perm   11 sec   (3658 perm/sec)   p_kst 9.631000e-01   p_cons 3.075000e-02   p_joint 1.538250e-01

Joint ci ratio: 4.288814e-02	ci left: 1.400811e-01	ci right 1.462404e-01	k: 7157	n:50000
Cons ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
KS ci ratio: 3.448625e-03	ci left: 9.610632e-01	ci right 9.644028e-01	k: 48138	n:50000
NRAP   50000 perm   14 sec   (3553 perm/sec)   p_kst 9.627600e-01   p_cons 3.152000e-02   p_joint 1.431400e-01

Outputting figure to mutsig2_images.part000000000117/NRAP.21_5361_50000_0.96276_0.03152_0.14314.png
                gene_name: NRAP
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 4 percent done.
NRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
NRG3   10000 perm   2 sec   (4776 perm/sec)   p_kst 4.100000e-02   p_cons 5.600000e-03   p_joint 6.100000e-03

Joint ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
Cons ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
KS ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
NRG3   20000 perm   5 sec   (4411 perm/sec)   p_kst 3.695000e-02   p_cons 4.450000e-03   p_joint 3.600000e-03

Joint ci ratio: 3.800645e-01	ci left: 2.863519e-03	ci right 4.235401e-03	k: 105	n:30000
Cons ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
KS ci ratio: 1.183696e-01	ci left: 3.317548e-02	ci right 3.738181e-02	k: 1057	n:30000
NRG3   30000 perm   7 sec   (4252 perm/sec)   p_kst 3.523333e-02   p_cons 4.866667e-03   p_joint 3.500000e-03

Joint ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
Cons ci ratio: 2.413810e-01	ci left: 5.759475e-03	ci right 7.363423e-03	k: 261	n:40000
KS ci ratio: 1.046714e-01	ci left: 3.209918e-02	ci right 3.566891e-02	k: 1354	n:40000
NRG3   40000 perm   10 sec   (4150 perm/sec)   p_kst 3.385000e-02   p_cons 6.525000e-03   p_joint 2.325000e-03

Joint ci ratio: 2.353018e-01	ci left: 4.870588e-03	ci right 6.187821e-03	k: 275	n:50000
Cons ci ratio: 2.194679e-01	ci left: 5.644169e-03	ci right 7.054066e-03	k: 316	n:50000
KS ci ratio: 9.378606e-02	ci left: 3.217447e-02	ci right 3.535995e-02	k: 1687	n:50000
NRG3   50000 perm   12 sec   (4061 perm/sec)   p_kst 3.374000e-02   p_cons 6.320000e-03   p_joint 5.500000e-03

Joint ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
Cons ci ratio: 1.991381e-01	ci left: 5.777565e-03	ci right 7.070874e-03	k: 384	n:60000
KS ci ratio: 8.626920e-02	ci left: 3.182970e-02	ci right 3.471568e-02	k: 1995	n:60000
NRG3   60000 perm   15 sec   (3973 perm/sec)   p_kst 3.325000e-02   p_cons 6.400000e-03   p_joint 4.100000e-03

Joint ci ratio: 2.337942e-01	ci left: 3.532482e-03	ci right 4.480789e-03	k: 279	n:70000
Cons ci ratio: 1.813760e-01	ci left: 6.027186e-03	ci right 7.242825e-03	k: 463	n:70000
KS ci ratio: 7.972241e-02	ci left: 3.205315e-02	ci right 3.472857e-02	k: 2336	n:70000
NRG3   70000 perm   18 sec   (3896 perm/sec)   p_kst 3.337143e-02   p_cons 6.614286e-03   p_joint 3.985714e-03

Joint ci ratio: 2.255182e-01	ci left: 3.338284e-03	ci right 4.198320e-03	k: 300	n:80000
Cons ci ratio: 1.718424e-01	ci left: 5.906984e-03	ci right 7.029259e-03	k: 516	n:80000
KS ci ratio: 7.391553e-02	ci left: 3.270573e-02	ci right 3.522821e-02	k: 2716	n:80000
NRG3   80000 perm   21 sec   (3825 perm/sec)   p_kst 3.395000e-02   p_cons 6.450000e-03   p_joint 3.750000e-03

Joint ci ratio: 2.140933e-01	ci left: 3.313849e-03	ci right 4.118660e-03	k: 333	n:90000
Cons ci ratio: 1.596321e-01	ci left: 6.124067e-03	ci right 7.196991e-03	k: 598	n:90000
KS ci ratio: 7.012434e-02	ci left: 3.237762e-02	ci right 3.474146e-02	k: 3019	n:90000
NRG3   90000 perm   24 sec   (3763 perm/sec)   p_kst 3.354444e-02   p_cons 6.644444e-03   p_joint 3.700000e-03

Joint ci ratio: 1.592849e-01	ci left: 5.540328e-03	ci right 6.508660e-03	k: 601	n:100000
Cons ci ratio: 1.507076e-01	ci left: 6.213353e-03	ci right 7.235573e-03	k: 671	n:100000
KS ci ratio: 6.669626e-02	ci left: 3.227523e-02	ci right 3.451194e-02	k: 3338	n:100000
NRG3   100000 perm   27 sec   (3678 perm/sec)   p_kst 3.338000e-02   p_cons 6.710000e-03   p_joint 6.010000e-03

Joint ci ratio: 1.403130e-01	ci left: 6.550890e-03	ci right 7.548094e-03	k: 774	n:110000
Cons ci ratio: 1.439099e-01	ci left: 6.217640e-03	ci right 7.190461e-03	k: 736	n:110000
KS ci ratio: 6.095381e-02	ci left: 3.513075e-02	ci right 3.734834e-02	k: 3985	n:110000
NRG3   110000 perm   30 sec   (3624 perm/sec)   p_kst 3.622727e-02   p_cons 6.690909e-03   p_joint 7.036364e-03

Joint ci ratio: 1.353472e-01	ci left: 6.471633e-03	ci right 7.419097e-03	k: 832	n:120000
Cons ci ratio: 1.381296e-01	ci left: 6.205981e-03	ci right 7.134768e-03	k: 799	n:120000
KS ci ratio: 5.863478e-02	ci left: 3.485446e-02	ci right 3.696805e-02	k: 4308	n:120000
NRG3   120000 perm   34 sec   (3578 perm/sec)   p_kst 3.590000e-02   p_cons 6.658333e-03   p_joint 6.933333e-03

Joint ci ratio: 1.327621e-01	ci left: 6.219093e-03	ci right 7.110819e-03	k: 865	n:130000
Cons ci ratio: 1.329942e-01	ci left: 6.196779e-03	ci right 7.086981e-03	k: 862	n:130000
KS ci ratio: 5.614814e-02	ci left: 3.512285e-02	ci right 3.715945e-02	k: 4697	n:130000
NRG3   130000 perm   37 sec   (3525 perm/sec)   p_kst 3.613077e-02   p_cons 6.630769e-03   p_joint 6.653846e-03

Joint ci ratio: 1.279062e-01	ci left: 6.237846e-03	ci right 7.097064e-03	k: 932	n:140000
Cons ci ratio: 1.277685e-01	ci left: 6.251678e-03	ci right 7.111803e-03	k: 934	n:140000
KS ci ratio: 5.398618e-02	ci left: 3.531221e-02	ci right 3.727849e-02	k: 5080	n:140000
NRG3   140000 perm   40 sec   (3475 perm/sec)   p_kst 3.628571e-02   p_cons 6.671429e-03   p_joint 6.657143e-03

Joint ci ratio: 1.265100e-01	ci left: 5.957479e-03	ci right 6.768446e-03	k: 953	n:150000
Cons ci ratio: 1.222612e-01	ci left: 6.390336e-03	ci right 7.228899e-03	k: 1020	n:150000
KS ci ratio: 5.217018e-02	ci left: 3.532621e-02	ci right 3.722510e-02	k: 5440	n:150000
NRG3   150000 perm   44 sec   (3429 perm/sec)   p_kst 3.626667e-02   p_cons 6.800000e-03   p_joint 6.353333e-03

Joint ci ratio: 1.261369e-01	ci left: 5.621390e-03	ci right 6.384178e-03	k: 959	n:160000
Cons ci ratio: 1.176774e-01	ci left: 6.482018e-03	ci right 7.298504e-03	k: 1101	n:160000
KS ci ratio: 5.049882e-02	ci left: 3.537648e-02	ci right 3.721537e-02	k: 5806	n:160000
NRG3   160000 perm   47 sec   (3382 perm/sec)   p_kst 3.628750e-02   p_cons 6.881250e-03   p_joint 5.993750e-03

Joint ci ratio: 1.255037e-01	ci left: 5.347644e-03	ci right 6.069370e-03	k: 969	n:170000
Cons ci ratio: 1.218909e-01	ci left: 5.678323e-03	ci right 6.421027e-03	k: 1027	n:170000
KS ci ratio: 4.893733e-02	ci left: 3.547982e-02	ci right 3.726545e-02	k: 6182	n:170000
NRG3   170000 perm   51 sec   (3339 perm/sec)   p_kst 3.636471e-02   p_cons 6.041176e-03   p_joint 5.700000e-03

Joint ci ratio: 1.214372e-01	ci left: 5.405906e-03	ci right 6.110156e-03	k: 1035	n:180000
Cons ci ratio: 1.181551e-01	ci left: 5.718526e-03	ci right 6.441965e-03	k: 1093	n:180000
KS ci ratio: 4.751603e-02	ci left: 3.556697e-02	ci right 3.730356e-02	k: 6557	n:180000
NRG3   180000 perm   55 sec   (3299 perm/sec)   p_kst 3.642778e-02   p_cons 6.072222e-03   p_joint 5.750000e-03

Joint ci ratio: 1.085166e-01	ci left: 6.450747e-03	ci right 7.195998e-03	k: 1295	n:190000
Cons ci ratio: 1.151935e-01	ci left: 5.708795e-03	ci right 6.411667e-03	k: 1150	n:190000
KS ci ratio: 4.612209e-02	ci left: 3.578093e-02	ci right 3.747535e-02	k: 6958	n:190000
NRG3   190000 perm   58 sec   (3258 perm/sec)   p_kst 3.662105e-02   p_cons 6.052632e-03   p_joint 6.815789e-03

Joint ci ratio: 1.073331e-01	ci left: 6.269264e-03	ci right 6.985149e-03	k: 1324	n:200000
Cons ci ratio: 1.127259e-01	ci left: 5.671080e-03	ci right 6.353357e-03	k: 1201	n:200000
KS ci ratio: 4.493918e-02	ci left: 3.582578e-02	ci right 3.747769e-02	k: 7329	n:200000
NRG3   200000 perm   62 sec   (3216 perm/sec)   p_kst 3.664500e-02   p_cons 6.005000e-03   p_joint 6.620000e-03

Joint ci ratio: 1.079669e-01	ci left: 5.901162e-03	ci right 6.579243e-03	k: 1309	n:210000
Cons ci ratio: 1.100136e-01	ci left: 5.678785e-03	ci right 6.344485e-03	k: 1261	n:210000
KS ci ratio: 4.387539e-02	ci left: 3.581503e-02	ci right 3.742636e-02	k: 7689	n:210000
NRG3   210000 perm   66 sec   (3177 perm/sec)   p_kst 3.661429e-02   p_cons 6.004762e-03   p_joint 6.233333e-03

Joint ci ratio: 1.152414e-01	ci left: 4.930208e-03	ci right 5.537485e-03	k: 1150	n:220000
Cons ci ratio: 1.066793e-01	ci left: 5.774457e-03	ci right 6.429568e-03	k: 1341	n:220000
KS ci ratio: 4.297803e-02	ci left: 3.565274e-02	ci right 3.722314e-02	k: 8015	n:220000
NRG3   220000 perm   70 sec   (3140 perm/sec)   p_kst 3.643182e-02   p_cons 6.095455e-03   p_joint 5.227273e-03

Joint ci ratio: 1.137254e-01	ci left: 4.846762e-03	ci right 5.435380e-03	k: 1181	n:230000
Cons ci ratio: 1.046728e-01	ci left: 5.743500e-03	ci right 6.382088e-03	k: 1393	n:230000
KS ci ratio: 4.208122e-02	ci left: 3.559094e-02	ci right 3.712512e-02	k: 8361	n:230000
NRG3   230000 perm   74 sec   (3102 perm/sec)   p_kst 3.635217e-02   p_cons 6.056522e-03   p_joint 5.134783e-03

Joint ci ratio: 1.071086e-01	ci left: 5.252623e-03	ci right 5.851080e-03	k: 1331	n:240000
Cons ci ratio: 1.022079e-01	ci left: 5.780196e-03	ci right 6.406822e-03	k: 1461	n:240000
KS ci ratio: 4.123093e-02	ci left: 3.554699e-02	ci right 3.704757e-02	k: 8710	n:240000
NRG3   240000 perm   78 sec   (3070 perm/sec)   p_kst 3.629167e-02   p_cons 6.087500e-03   p_joint 5.545833e-03

Joint ci ratio: 1.060454e-01	ci left: 5.147625e-03	ci right 5.727932e-03	k: 1358	n:250000
Cons ci ratio: 1.003725e-01	ci left: 5.759513e-03	ci right 6.372023e-03	k: 1515	n:250000
KS ci ratio: 4.040011e-02	ci left: 3.555833e-02	ci right 3.702845e-02	k: 9072	n:250000
NRG3   250000 perm   82 sec   (3040 perm/sec)   p_kst 3.628800e-02   p_cons 6.060000e-03   p_joint 5.432000e-03

Joint ci ratio: 1.059000e-01	ci left: 4.964591e-03	ci right 5.523448e-03	k: 1362	n:260000
Cons ci ratio: 9.831801e-02	ci left: 5.778034e-03	ci right 6.379210e-03	k: 1579	n:260000
KS ci ratio: 3.965903e-02	ci left: 3.549670e-02	ci right 3.693674e-02	k: 9415	n:260000
NRG3   260000 perm   87 sec   (3000 perm/sec)   p_kst 3.621154e-02   p_cons 6.073077e-03   p_joint 5.238462e-03

Joint ci ratio: 1.074259e-01	ci left: 4.643690e-03	ci right 5.174431e-03	k: 1324	n:270000
Cons ci ratio: 9.686007e-02	ci left: 5.737465e-03	ci right 6.325066e-03	k: 1627	n:270000
KS ci ratio: 3.893039e-02	ci left: 3.548757e-02	ci right 3.690019e-02	k: 9771	n:270000
NRG3   270000 perm   91 sec   (2960 perm/sec)   p_kst 3.618889e-02   p_cons 6.025926e-03   p_joint 4.903704e-03

Joint ci ratio: 1.071110e-01	ci left: 4.505631e-03	ci right 5.018988e-03	k: 1332	n:280000
Cons ci ratio: 9.517985e-02	ci left: 5.734724e-03	ci right 6.311287e-03	k: 1685	n:280000
KS ci ratio: 3.824636e-02	ci left: 3.546870e-02	ci right 3.685521e-02	k: 10124	n:280000
NRG3   280000 perm   95 sec   (2932 perm/sec)   p_kst 3.615714e-02   p_cons 6.017857e-03   p_joint 4.757143e-03

Joint ci ratio: 1.060854e-01	ci left: 4.437521e-03	ci right 4.937974e-03	k: 1358	n:290000
Cons ci ratio: 9.353020e-02	ci left: 5.738989e-03	ci right 6.305433e-03	k: 1745	n:290000
KS ci ratio: 3.757300e-02	ci left: 3.549575e-02	ci right 3.685836e-02	k: 10490	n:290000
NRG3   290000 perm   100 sec   (2905 perm/sec)   p_kst 3.617241e-02   p_cons 6.017241e-03   p_joint 4.682759e-03

Joint ci ratio: 1.084434e-01	ci left: 4.101418e-03	ci right 4.574902e-03	k: 1300	n:300000
Cons ci ratio: 9.201473e-02	ci left: 5.736537e-03	ci right 6.293071e-03	k: 1803	n:300000
KS ci ratio: 3.688994e-02	ci left: 3.560380e-02	ci right 3.694518e-02	k: 10881	n:300000
NRG3   300000 perm   104 sec   (2877 perm/sec)   p_kst 3.627000e-02   p_cons 6.010000e-03   p_joint 4.333333e-03

Joint ci ratio: 1.070149e-01	ci left: 4.078973e-03	ci right 4.543272e-03	k: 1335	n:310000
Cons ci ratio: 9.086565e-02	ci left: 5.696476e-03	ci right 6.241854e-03	k: 1849	n:310000
KS ci ratio: 3.623616e-02	ci left: 3.571787e-02	ci right 3.703920e-02	k: 11276	n:310000
NRG3   310000 perm   109 sec   (2850 perm/sec)   p_kst 3.637419e-02   p_cons 5.964516e-03   p_joint 4.306452e-03

Joint ci ratio: 1.187496e-01	ci left: 3.192164e-03	ci right 3.598162e-03	k: 1085	n:320000
Cons ci ratio: 8.968720e-02	ci left: 5.668125e-03	ci right 6.203382e-03	k: 1898	n:320000
KS ci ratio: 3.567625e-02	ci left: 3.570727e-02	ci right 3.700739e-02	k: 11633	n:320000
NRG3   320000 perm   114 sec   (2817 perm/sec)   p_kst 3.635313e-02   p_cons 5.931250e-03   p_joint 3.390625e-03

Joint ci ratio: 1.177270e-01	ci left: 3.151300e-03	ci right 3.548409e-03	k: 1104	n:330000
Cons ci ratio: 8.830297e-02	ci left: 5.674136e-03	ci right 6.201264e-03	k: 1958	n:330000
KS ci ratio: 3.510204e-02	ci left: 3.577559e-02	ci right 3.705681e-02	k: 12016	n:330000
NRG3   330000 perm   118 sec   (2790 perm/sec)   p_kst 3.641212e-02   p_cons 5.933333e-03   p_joint 3.345455e-03

Joint ci ratio: 1.190920e-01	ci left: 2.987248e-03	ci right 3.368356e-03	k: 1079	n:340000
Cons ci ratio: 8.719841e-02	ci left: 5.651078e-03	ci right 6.169162e-03	k: 2008	n:340000
KS ci ratio: 3.457062e-02	ci left: 3.580797e-02	ci right 3.707054e-02	k: 12388	n:340000
NRG3   340000 perm   123 sec   (2764 perm/sec)   p_kst 3.643529e-02   p_cons 5.905882e-03   p_joint 3.173529e-03

Joint ci ratio: 1.175251e-01	ci left: 2.982303e-03	ci right 3.357426e-03	k: 1108	n:350000
Cons ci ratio: 8.596645e-02	ci left: 5.651745e-03	ci right 6.162202e-03	k: 2066	n:350000
KS ci ratio: 3.408619e-02	ci left: 3.579045e-02	ci right 3.703438e-02	k: 12743	n:350000
NRG3   350000 perm   128 sec   (2725 perm/sec)   p_kst 3.640857e-02   p_cons 5.902857e-03   p_joint 3.165714e-03

Joint ci ratio: 1.185533e-01	ci left: 2.848230e-03	ci right 3.209843e-03	k: 1089	n:360000
Cons ci ratio: 8.472513e-02	ci left: 5.660581e-03	ci right 6.164089e-03	k: 2127	n:360000
KS ci ratio: 3.362423e-02	ci left: 3.576852e-02	ci right 3.699451e-02	k: 13096	n:360000
NRG3   360000 perm   134 sec   (2696 perm/sec)   p_kst 3.637778e-02   p_cons 5.908333e-03   p_joint 3.025000e-03

Joint ci ratio: 1.175352e-01	ci left: 2.821084e-03	ci right 3.175960e-03	k: 1108	n:370000
Cons ci ratio: 8.359372e-02	ci left: 5.661050e-03	ci right 6.157547e-03	k: 2185	n:370000
KS ci ratio: 3.313712e-02	ci left: 3.583904e-02	ci right 3.704931e-02	k: 13483	n:370000
NRG3   370000 perm   139 sec   (2668 perm/sec)   p_kst 3.644054e-02   p_cons 5.905405e-03   p_joint 2.994595e-03

Joint ci ratio: 1.168549e-01	ci left: 2.780049e-03	ci right 3.127599e-03	k: 1121	n:380000
Cons ci ratio: 8.252496e-02	ci left: 5.658959e-03	ci right 6.148622e-03	k: 2242	n:380000
KS ci ratio: 3.272204e-02	ci left: 3.579631e-02	ci right 3.698972e-02	k: 13828	n:380000
NRG3   380000 perm   144 sec   (2642 perm/sec)   p_kst 3.638947e-02   p_cons 5.900000e-03   p_joint 2.950000e-03

Joint ci ratio: 1.155246e-01	ci left: 2.773494e-03	ci right 3.116008e-03	k: 1147	n:390000
Cons ci ratio: 8.156755e-02	ci left: 5.646965e-03	ci right 6.129652e-03	k: 2295	n:390000
KS ci ratio: 3.227965e-02	ci left: 3.584746e-02	ci right 3.702611e-02	k: 14209	n:390000
NRG3   390000 perm   149 sec   (2617 perm/sec)   p_kst 3.643333e-02   p_cons 5.884615e-03   p_joint 2.941026e-03

Joint ci ratio: 1.151772e-01	ci left: 2.721148e-03	ci right 3.056118e-03	k: 1154	n:400000
Cons ci ratio: 8.057372e-02	ci left: 5.645402e-03	ci right 6.121799e-03	k: 2352	n:400000
KS ci ratio: 3.187855e-02	ci left: 3.584405e-02	ci right 3.700768e-02	k: 14569	n:400000
NRG3   400000 perm   154 sec   (2591 perm/sec)   p_kst 3.642250e-02   p_cons 5.880000e-03   p_joint 2.885000e-03

Joint ci ratio: 1.154825e-01	ci left: 2.640560e-03	ci right 2.966530e-03	k: 1148	n:410000
Cons ci ratio: 7.951585e-02	ci left: 5.658293e-03	ci right 6.129219e-03	k: 2415	n:410000
KS ci ratio: 3.149423e-02	ci left: 3.583606e-02	ci right 3.698514e-02	k: 14927	n:410000
NRG3   410000 perm   160 sec   (2565 perm/sec)   p_kst 3.640732e-02   p_cons 5.890244e-03   p_joint 2.800000e-03

Joint ci ratio: 1.143934e-01	ci left: 2.628563e-03	ci right 2.949786e-03	k: 1170	n:420000
Cons ci ratio: 7.859432e-02	ci left: 5.656603e-03	ci right 6.121682e-03	k: 2472	n:420000
KS ci ratio: 3.112876e-02	ci left: 3.581671e-02	ci right 3.695161e-02	k: 15280	n:420000
NRG3   420000 perm   165 sec   (2540 perm/sec)   p_kst 3.638095e-02   p_cons 5.885714e-03   p_joint 2.785714e-03

Joint ci ratio: 1.169273e-01	ci left: 2.454506e-03	ci right 2.761560e-03	k: 1120	n:430000
Cons ci ratio: 7.784349e-02	ci left: 5.634496e-03	ci right 6.093131e-03	k: 2520	n:430000
KS ci ratio: 3.075430e-02	ci left: 3.584681e-02	ci right 3.696876e-02	k: 15654	n:430000
NRG3   430000 perm   171 sec   (2515 perm/sec)   p_kst 3.640465e-02   p_cons 5.860465e-03   p_joint 2.604651e-03

Joint ci ratio: 1.187500e-01	ci left: 2.323717e-03	ci right 2.619259e-03	k: 1086	n:440000
Cons ci ratio: 7.676886e-02	ci left: 5.664687e-03	ci right 6.119130e-03	k: 2591	n:440000
KS ci ratio: 3.039894e-02	ci left: 3.586208e-02	ci right 3.697131e-02	k: 16022	n:440000
NRG3   440000 perm   177 sec   (2492 perm/sec)   p_kst 3.641364e-02   p_cons 5.888636e-03   p_joint 2.468182e-03

Joint ci ratio: 1.175666e-01	ci left: 2.319522e-03	ci right 2.611387e-03	k: 1108	n:450000
Cons ci ratio: 7.593860e-02	ci left: 5.663053e-03	ci right 6.112234e-03	k: 2648	n:450000
KS ci ratio: 3.006705e-02	ci left: 3.585027e-02	ci right 3.694682e-02	k: 16378	n:450000
NRG3   450000 perm   183 sec   (2465 perm/sec)   p_kst 3.639556e-02   p_cons 5.884444e-03   p_joint 2.462222e-03

Joint ci ratio: 1.189760e-01	ci left: 2.214241e-03	ci right 2.496433e-03	k: 1082	n:460000
Cons ci ratio: 7.512074e-02	ci left: 5.663648e-03	ci right 6.107827e-03	k: 2706	n:460000
KS ci ratio: 2.969244e-02	ci left: 3.596422e-02	ci right 3.705032e-02	k: 16792	n:460000
NRG3   460000 perm   188 sec   (2441 perm/sec)   p_kst 3.650435e-02   p_cons 5.882609e-03   p_joint 2.352174e-03

Joint ci ratio: 1.183238e-01	ci left: 2.191902e-03	ci right 2.469609e-03	k: 1094	n:470000
Cons ci ratio: 7.420736e-02	ci left: 5.683039e-03	ci right 6.123086e-03	k: 2773	n:470000
KS ci ratio: 2.935983e-02	ci left: 3.600580e-02	ci right 3.708077e-02	k: 17174	n:470000
NRG3   470000 perm   194 sec   (2421 perm/sec)   p_kst 3.654043e-02   p_cons 5.900000e-03   p_joint 2.327660e-03

Joint ci ratio: 1.169432e-01	ci left: 2.198811e-03	ci right 2.473918e-03	k: 1120	n:480000
Cons ci ratio: 7.340451e-02	ci left: 5.689381e-03	ci right 6.124949e-03	k: 2834	n:480000
KS ci ratio: 2.904846e-02	ci left: 3.602089e-02	ci right 3.708471e-02	k: 17544	n:480000
NRG3   480000 perm   200 sec   (2399 perm/sec)   p_kst 3.655000e-02   p_cons 5.904167e-03   p_joint 2.333333e-03

Joint ci ratio: 1.176849e-01	ci left: 2.126200e-03	ci right 2.394026e-03	k: 1106	n:490000
Cons ci ratio: 7.245122e-02	ci left: 5.723544e-03	ci right 6.155798e-03	k: 2909	n:490000
KS ci ratio: 2.874346e-02	ci left: 3.604353e-02	ci right 3.709666e-02	k: 17918	n:490000
NRG3   490000 perm   206 sec   (2379 perm/sec)   p_kst 3.656735e-02   p_cons 5.936735e-03   p_joint 2.257143e-03

Joint ci ratio: 1.165327e-01	ci left: 2.126387e-03	ci right 2.391434e-03	k: 1128	n:500000
Cons ci ratio: 7.173992e-02	ci left: 5.722982e-03	ci right 6.150773e-03	k: 2967	n:500000
KS ci ratio: 2.845029e-02	ci left: 3.605935e-02	ci right 3.710203e-02	k: 18289	n:500000
NRG3   500000 perm   212 sec   (2358 perm/sec)   p_kst 3.657800e-02   p_cons 5.934000e-03   p_joint 2.256000e-03

Joint ci ratio: 1.071460e-01	ci left: 2.477358e-03	ci right 2.759712e-03	k: 1334	n:510000
Cons ci ratio: 7.299137e-02	ci left: 5.418205e-03	ci right 5.830579e-03	k: 2867	n:510000
KS ci ratio: 2.817766e-02	ci left: 3.604540e-02	ci right 3.707752e-02	k: 18645	n:510000
NRG3   510000 perm   218 sec   (2338 perm/sec)   p_kst 3.655882e-02   p_cons 5.621569e-03   p_joint 2.615686e-03

Joint ci ratio: 1.061567e-01	ci left: 2.476511e-03	ci right 2.756000e-03	k: 1359	n:520000
Cons ci ratio: 7.215269e-02	ci left: 5.440519e-03	ci right 5.849634e-03	k: 2934	n:520000
KS ci ratio: 2.787545e-02	ci left: 3.612563e-02	ci right 3.714877e-02	k: 19050	n:520000
NRG3   520000 perm   224 sec   (2317 perm/sec)   p_kst 3.663462e-02   p_cons 5.642308e-03   p_joint 2.613462e-03

Joint ci ratio: 1.080888e-01	ci left: 2.341636e-03	ci right 2.611019e-03	k: 1311	n:530000
Cons ci ratio: 7.155833e-02	ci left: 5.428658e-03	ci right 5.833378e-03	k: 2983	n:530000
KS ci ratio: 2.764402e-02	ci left: 3.604732e-02	ci right 3.705964e-02	k: 19372	n:530000
NRG3   530000 perm   231 sec   (2296 perm/sec)   p_kst 3.655094e-02   p_cons 5.628302e-03   p_joint 2.473585e-03

Joint ci ratio: 1.067935e-01	ci left: 2.355940e-03	ci right 2.623517e-03	k: 1343	n:540000
Cons ci ratio: 7.100197e-02	ci left: 5.413612e-03	ci right 5.813943e-03	k: 3030	n:540000
KS ci ratio: 2.737645e-02	ci left: 3.607865e-02	ci right 3.708189e-02	k: 19752	n:540000
NRG3   540000 perm   238 sec   (2273 perm/sec)   p_kst 3.657778e-02   p_cons 5.611111e-03   p_joint 2.487037e-03

Joint ci ratio: 1.057365e-01	ci left: 2.360891e-03	ci right 2.626211e-03	k: 1370	n:550000
Cons ci ratio: 7.025212e-02	ci left: 5.431279e-03	ci right 5.828502e-03	k: 3095	n:550000
KS ci ratio: 2.712629e-02	ci left: 3.608360e-02	ci right 3.707766e-02	k: 20118	n:550000
NRG3   550000 perm   244 sec   (2251 perm/sec)   p_kst 3.657818e-02   p_cons 5.627273e-03   p_joint 2.490909e-03

Joint ci ratio: 1.050498e-01	ci left: 2.350027e-03	ci right 2.612305e-03	k: 1388	n:560000
Cons ci ratio: 6.973661e-02	ci left: 5.414995e-03	ci right 5.808003e-03	k: 3141	n:560000
KS ci ratio: 2.688558e-02	ci left: 3.608131e-02	ci right 3.706635e-02	k: 20480	n:560000
NRG3   560000 perm   251 sec   (2233 perm/sec)   p_kst 3.657143e-02   p_cons 5.608929e-03   p_joint 2.478571e-03

Joint ci ratio: 1.048631e-01	ci left: 2.317338e-03	ci right 2.575480e-03	k: 1393	n:570000
Cons ci ratio: 6.902573e-02	ci left: 5.432054e-03	ci right 5.822120e-03	k: 3206	n:570000
KS ci ratio: 2.667111e-02	ci left: 3.602685e-02	ci right 3.700243e-02	k: 20812	n:570000
NRG3   570000 perm   257 sec   (2215 perm/sec)   p_kst 3.651228e-02   p_cons 5.624561e-03   p_joint 2.443860e-03

Joint ci ratio: 1.036063e-01	ci left: 2.334477e-03	ci right 2.591222e-03	k: 1427	n:580000
Cons ci ratio: 6.846253e-02	ci left: 5.428206e-03	ci right 5.814689e-03	k: 3259	n:580000
KS ci ratio: 2.642862e-02	ci left: 3.606166e-02	ci right 3.702918e-02	k: 21195	n:580000
NRG3   580000 perm   264 sec   (2197 perm/sec)   p_kst 3.654310e-02   p_cons 5.618966e-03   p_joint 2.460345e-03

Joint ci ratio: 1.039007e-01	ci left: 2.281699e-03	ci right 2.533396e-03	k: 1419	n:590000
Cons ci ratio: 6.779979e-02	ci left: 5.442830e-03	ci right 5.826456e-03	k: 3323	n:590000
KS ci ratio: 2.620650e-02	ci left: 3.605828e-02	ci right 3.701746e-02	k: 21556	n:590000
NRG3   590000 perm   271 sec   (2181 perm/sec)   p_kst 3.653559e-02   p_cons 5.632203e-03   p_joint 2.405085e-03

Joint ci ratio: 1.032488e-01	ci left: 2.272893e-03	ci right 2.521950e-03	k: 1437	n:600000
Cons ci ratio: 6.721581e-02	ci left: 5.447151e-03	ci right 5.827646e-03	k: 3381	n:600000
KS ci ratio: 2.599296e-02	ci left: 3.604677e-02	ci right 3.699771e-02	k: 21912	n:600000
NRG3   600000 perm   277 sec   (2163 perm/sec)   p_kst 3.652000e-02   p_cons 5.635000e-03   p_joint 2.395000e-03

Joint ci ratio: 9.681531e-02	ci left: 2.550529e-03	ci right 2.811607e-03	k: 1634	n:610000
Cons ci ratio: 6.659801e-02	ci left: 5.459406e-03	ci right 5.837116e-03	k: 3444	n:610000
KS ci ratio: 2.577735e-02	ci left: 3.605522e-02	ci right 3.699837e-02	k: 22280	n:610000
NRG3   610000 perm   284 sec   (2147 perm/sec)   p_kst 3.652459e-02   p_cons 5.645902e-03   p_joint 2.678689e-03

Outputting figure to mutsig2_images.part000000000117/NRG3.19_2371_610000_0.036525_0.0056459_0.0026787.png
                gene_name: NRG3
               theta_stop: 0.097 
                    nperm: 610000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0028 

Current progress: 6 percent done.
NRXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
Cons ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
KS ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
NRXN3   10000 perm   2 sec   (4537 perm/sec)   p_kst 4.540000e-01   p_cons 6.624000e-01   p_joint 6.465000e-01

Outputting figure to mutsig2_images.part000000000117/NRXN3.18_3600_10000_0.454_0.6624_0.6465.png
                gene_name: NRXN3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 7 percent done.
NRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
Cons ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
KS ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
NRK   10000 perm   2 sec   (4204 perm/sec)   p_kst 9.723000e-01   p_cons 7.980000e-02   p_joint 5.296000e-01

Joint ci ratio: 3.576946e-02	ci left: 3.684335e-01	ci right 3.819028e-01	k: 7503	n:20000
Cons ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
KS ci ratio: 5.079632e-03	ci left: 9.650003e-01	ci right 9.699625e-01	k: 19351	n:20000
NRK   20000 perm   5 sec   (3840 perm/sec)   p_kst 9.675500e-01   p_cons 7.785000e-02   p_joint 3.751500e-01

Outputting figure to mutsig2_images.part000000000117/NRK.16_4865_20000_0.96755_0.07785_0.37515.png
                gene_name: NRK
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 9 percent done.
NTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
NTM   10000 perm   2 sec   (5112 perm/sec)   p_kst 5.228000e-01   p_cons 4.111000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000117/NTM.16_1203_10000_0.5228_0.4111_0.5921.png
                gene_name: NTM
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 11 percent done.
NRCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
Cons ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
KS ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
NRCAM   10000 perm   2 sec   (4232 perm/sec)   p_kst 7.798000e-01   p_cons 4.438000e-01   p_joint 8.911000e-01

Outputting figure to mutsig2_images.part000000000117/NRCAM.14_4065_10000_0.7798_0.4438_0.8911.png
                gene_name: NRCAM
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 13 percent done.
NRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
NRP2   10000 perm   2 sec   (4568 perm/sec)   p_kst 5.937000e-01   p_cons 4.870000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000117/NRP2.14_3176_10000_0.5937_0.487_0.7053.png
                gene_name: NRP2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
NSUN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
NSUN2   10000 perm   2 sec   (4845 perm/sec)   p_kst 4.370000e-02   p_cons 2.910000e-02   p_joint 3.750000e-02

Joint ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
Cons ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
KS ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
NSUN2   20000 perm   5 sec   (4403 perm/sec)   p_kst 4.275000e-02   p_cons 2.975000e-02   p_joint 5.270000e-02

Joint ci ratio: 1.177366e-01	ci left: 3.353168e-02	ci right 3.775886e-02	k: 1068	n:30000
Cons ci ratio: 1.317389e-01	ci left: 2.677524e-02	ci right 3.058344e-02	k: 859	n:30000
KS ci ratio: 1.074221e-01	ci left: 4.021255e-02	ci right 4.480992e-02	k: 1274	n:30000
NSUN2   30000 perm   7 sec   (4151 perm/sec)   p_kst 4.246667e-02   p_cons 2.863333e-02   p_joint 3.560000e-02

Joint ci ratio: 9.946929e-02	ci left: 3.551293e-02	ci right 3.925462e-02	k: 1494	n:40000
Cons ci ratio: 1.136652e-01	ci left: 2.723143e-02	ci right 3.053743e-02	k: 1154	n:40000
KS ci ratio: 9.229595e-02	ci left: 4.115501e-02	ci right 4.516165e-02	k: 1725	n:40000
NSUN2   40000 perm   10 sec   (4061 perm/sec)   p_kst 4.312500e-02   p_cons 2.885000e-02   p_joint 3.735000e-02

Joint ci ratio: 1.002705e-01	ci left: 2.817084e-02	ci right 3.116409e-02	k: 1482	n:50000
Cons ci ratio: 1.010812e-01	ci left: 2.772210e-02	ci right 3.069289e-02	k: 1459	n:50000
KS ci ratio: 8.329124e-02	ci left: 4.065042e-02	ci right 4.420295e-02	k: 2120	n:50000
NSUN2   50000 perm   13 sec   (3996 perm/sec)   p_kst 4.240000e-02   p_cons 2.918000e-02   p_joint 2.964000e-02

Joint ci ratio: 9.850138e-02	ci left: 2.444850e-02	ci right 2.699766e-02	k: 1542	n:60000
Cons ci ratio: 9.230138e-02	ci left: 2.783470e-02	ci right 3.054443e-02	k: 1750	n:60000
KS ci ratio: 7.520795e-02	ci left: 4.168523e-02	ci right 4.495913e-02	k: 2598	n:60000
NSUN2   60000 perm   15 sec   (3947 perm/sec)   p_kst 4.330000e-02   p_cons 2.916667e-02   p_joint 2.570000e-02

Outputting figure to mutsig2_images.part000000000117/NSUN2.12_2380_60000_0.0433_0.029167_0.0257.png
                gene_name: NSUN2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 17 percent done.
NRXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
Cons ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
NRXN2   10000 perm   3 sec   (3920 perm/sec)   p_kst 3.802000e-01   p_cons 2.055000e-01   p_joint 4.457000e-01

Outputting figure to mutsig2_images.part000000000117/NRXN2.11_5496_10000_0.3802_0.2055_0.4457.png
                gene_name: NRXN2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 19 percent done.
NSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
Cons ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
KS ci ratio: 2.965940e-02	ci left: 6.263806e-01	ci right 6.453402e-01	k: 6359	n:10000
NSD1   10000 perm   3 sec   (3779 perm/sec)   p_kst 6.359000e-01   p_cons 3.001000e-01   p_joint 6.849000e-01

Outputting figure to mutsig2_images.part000000000117/NSD1.11_8179_10000_0.6359_0.3001_0.6849.png
                gene_name: NSD1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 20 percent done.
NRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
Cons ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
KS ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
NRG1   10000 perm   2 sec   (4564 perm/sec)   p_kst 1.696000e-01   p_cons 1.878000e-01   p_joint 1.125000e-01

Joint ci ratio: 6.830217e-02	ci left: 1.365491e-01	ci right 1.462554e-01	k: 2827	n:20000
Cons ci ratio: 5.718452e-02	ci left: 1.847812e-01	ci right 1.957090e-01	k: 3804	n:20000
KS ci ratio: 6.420431e-02	ci left: 1.520325e-01	ci right 1.621674e-01	k: 3141	n:20000
NRG1   20000 perm   5 sec   (4070 perm/sec)   p_kst 1.570500e-01   p_cons 1.902000e-01   p_joint 1.413500e-01

Outputting figure to mutsig2_images.part000000000117/NRG1.9_3696_20000_0.15705_0.1902_0.14135.png
                gene_name: NRG1
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 22 percent done.
NRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
NRF1   10000 perm   2 sec   (5567 perm/sec)   p_kst 9.040000e-02   p_cons 7.265000e-01   p_joint 1.691000e-01

Joint ci ratio: 6.411960e-02	ci left: 1.523779e-01	ci right 1.625219e-01	k: 3148	n:20000
Cons ci ratio: 1.715026e-02	ci left: 7.168918e-01	ci right 7.293433e-01	k: 14463	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
NRF1   20000 perm   4 sec   (4935 perm/sec)   p_kst 8.875000e-02   p_cons 7.231500e-01   p_joint 1.574000e-01

Outputting figure to mutsig2_images.part000000000117/NRF1.8_1552_20000_0.08875_0.72315_0.1574.png
                gene_name: NRF1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 24 percent done.
NRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
NRIP1   10000 perm   2 sec   (4983 perm/sec)   p_kst 4.955000e-01   p_cons 3.024000e-01   p_joint 5.307000e-01

Outputting figure to mutsig2_images.part000000000117/NRIP1.8_3481_10000_0.4955_0.3024_0.5307.png
                gene_name: NRIP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 26 percent done.
NR2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
Cons ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
KS ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
NR2E1   10000 perm   2 sec   (5598 perm/sec)   p_kst 2.080000e-01   p_cons 3.097000e-01   p_joint 1.853000e-01

Outputting figure to mutsig2_images.part000000000117/NR2E1.7_1194_10000_0.208_0.3097_0.1853.png
                gene_name: NR2E1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 28 percent done.
NR4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
Cons ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
NR4A2   10000 perm   2 sec   (5399 perm/sec)   p_kst 2.249000e-01   p_cons 2.377000e-01   p_joint 2.869000e-01

Outputting figure to mutsig2_images.part000000000117/NR4A2.7_1821_10000_0.2249_0.2377_0.2869.png
                gene_name: NR4A2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 30 percent done.
NT5DC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
Cons ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KS ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
NT5DC3   10000 perm   2 sec   (5189 perm/sec)   p_kst 1.220000e-01   p_cons 8.690000e-02   p_joint 1.098000e-01

Joint ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
NT5DC3   20000 perm   4 sec   (4692 perm/sec)   p_kst 1.180500e-01   p_cons 8.700000e-02   p_joint 1.104000e-01

Outputting figure to mutsig2_images.part000000000117/NT5DC3.7_1703_20000_0.11805_0.087_0.1104.png
                gene_name: NT5DC3
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
NTF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
NTF3   10000 perm   2 sec   (6058 perm/sec)   p_kst 2.605000e-01   p_cons 7.393000e-01   p_joint 4.928000e-01

Outputting figure to mutsig2_images.part000000000117/NTF3.7_821_10000_0.2605_0.7393_0.4928.png
                gene_name: NTF3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
NR1H4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.713205e-02	ci left: 3.991423e-01	ci right 4.185108e-01	k: 4088	n:10000
Cons ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
NR1H4   10000 perm   2 sec   (6257 perm/sec)   p_kst 2.393000e-01   p_cons 4.559000e-01   p_joint 4.088000e-01

Outputting figure to mutsig2_images.part000000000117/NR1H4.4_1455_10000_0.2393_0.4559_0.4088.png
                gene_name: NR1H4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
NR1I3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
KS ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
NR1I3   10000 perm   2 sec   (5793 perm/sec)   p_kst 8.624000e-01   p_cons 6.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR1I3.5_1225_10000_0.8624_0.6624_1.png
                gene_name: NR1I3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
NR3C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
Cons ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
KS ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
NR3C2   10000 perm   2 sec   (4749 perm/sec)   p_kst 2.355000e-01   p_cons 9.146000e-01   p_joint 4.690000e-01

Outputting figure to mutsig2_images.part000000000117/NR3C2.5_2987_10000_0.2355_0.9146_0.469.png
                gene_name: NR3C2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
NR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
KS ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
NR5A2   10000 perm   2 sec   (5830 perm/sec)   p_kst 4.893000e-01   p_cons 5.834000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR5A2.5_1658_10000_0.4893_0.5834_1.png
                gene_name: NR5A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
NTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
Cons ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
KS ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
NTN4   10000 perm   2 sec   (5714 perm/sec)   p_kst 3.109000e-01   p_cons 1.344000e-01   p_joint 3.330000e-01

Outputting figure to mutsig2_images.part000000000117/NTN4.5_1927_10000_0.3109_0.1344_0.333.png
                gene_name: NTN4
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 43 percent done.
NR1H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
Cons ci ratio: 2.988391e-02	ci left: 6.228625e-01	ci right 6.418603e-01	k: 6324	n:10000
KS ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
NR1H3   10000 perm   2 sec   (6146 perm/sec)   p_kst 9.620000e-02   p_cons 6.324000e-01   p_joint 1.642000e-01

Joint ci ratio: 6.311159e-02	ci left: 1.565725e-01	ci right 1.668260e-01	k: 3233	n:20000
Cons ci ratio: 2.132338e-02	ci left: 6.214589e-01	ci right 6.349038e-01	k: 12564	n:20000
KS ci ratio: 8.423465e-02	ci left: 9.356977e-02	ci right 1.018476e-01	k: 1953	n:20000
NR1H3   20000 perm   4 sec   (5461 perm/sec)   p_kst 9.765000e-02   p_cons 6.282000e-01   p_joint 1.616500e-01

Outputting figure to mutsig2_images.part000000000117/NR1H3.4_1380_20000_0.09765_0.6282_0.16165.png
                gene_name: NR1H3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 44 percent done.
NRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
NRAS   10000 perm   1 sec   (6813 perm/sec)   p_kst 1.000000e-04   p_cons 1.926000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 5.697197e-02	ci left: 1.859185e-01	ci right 1.968714e-01	k: 3827	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
NRAS   20000 perm   3 sec   (5940 perm/sec)   p_kst 5.000000e-05   p_cons 1.913500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 4.647759e-02	ci left: 1.871929e-01	ci right 1.961335e-01	k: 5749	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
NRAS   30000 perm   5 sec   (5642 perm/sec)   p_kst 6.666667e-05   p_cons 1.916333e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 3.999505e-02	ci left: 1.897626e-01	ci right 1.975320e-01	k: 7745	n:40000
KS ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
NRAS   40000 perm   7 sec   (5466 perm/sec)   p_kst 5.000000e-05   p_cons 1.936250e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 3.580137e-02	ci left: 1.899261e-01	ci right 1.968696e-01	k: 9669	n:50000
KS ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
NRAS   50000 perm   9 sec   (5300 perm/sec)   p_kst 4.000000e-05   p_cons 1.933800e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 3.255343e-02	ci left: 1.914553e-01	ci right 1.978076e-01	k: 11677	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
NRAS   60000 perm   12 sec   (5177 perm/sec)   p_kst 1.666667e-05   p_cons 1.946167e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 3.018036e-02	ci left: 1.912609e-01	ci right 1.971359e-01	k: 13593	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
NRAS   70000 perm   14 sec   (5087 perm/sec)   p_kst 1.428571e-05   p_cons 1.941857e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.825260e-02	ci left: 1.912150e-01	ci right 1.967072e-01	k: 15516	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
NRAS   80000 perm   16 sec   (4984 perm/sec)   p_kst 1.250000e-05   p_cons 1.939500e-01   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.662794e-02	ci left: 1.914762e-01	ci right 1.966547e-01	k: 17465	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
NRAS   90000 perm   18 sec   (4879 perm/sec)   p_kst 1.111111e-05   p_cons 1.940556e-01   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.535610e-02	ci left: 1.904484e-01	ci right 1.953494e-01	k: 19289	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
NRAS   100000 perm   21 sec   (4777 perm/sec)   p_kst 1.000000e-05   p_cons 1.928900e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.414016e-02	ci left: 1.910243e-01	ci right 1.957010e-01	k: 21269	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
NRAS   110000 perm   24 sec   (4673 perm/sec)   p_kst 9.090909e-06   p_cons 1.933545e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.314067e-02	ci left: 1.907455e-01	ci right 1.952194e-01	k: 23157	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
NRAS   120000 perm   26 sec   (4581 perm/sec)   p_kst 8.333333e-06   p_cons 1.929750e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.225418e-02	ci left: 1.905360e-01	ci right 1.948316e-01	k: 25048	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
NRAS   130000 perm   29 sec   (4496 perm/sec)   p_kst 7.692308e-06   p_cons 1.926769e-01   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.146283e-02	ci left: 1.903522e-01	ci right 1.944891e-01	k: 26938	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
NRAS   140000 perm   32 sec   (4415 perm/sec)   p_kst 7.142857e-06   p_cons 1.924143e-01   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.076545e-02	ci left: 1.899696e-01	ci right 1.939624e-01	k: 28794	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
NRAS   150000 perm   35 sec   (4337 perm/sec)   p_kst 6.666667e-06   p_cons 1.919600e-01   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.013270e-02	ci left: 1.896243e-01	ci right 1.934869e-01	k: 30648	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
NRAS   160000 perm   38 sec   (4261 perm/sec)   p_kst 6.250000e-06   p_cons 1.915500e-01   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.956153e-02	ci left: 1.892099e-01	ci right 1.929536e-01	k: 32483	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
NRAS   170000 perm   40 sec   (4201 perm/sec)   p_kst 5.882353e-06   p_cons 1.910765e-01   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.900145e-02	ci left: 1.894077e-01	ci right 1.930467e-01	k: 34420	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
NRAS   180000 perm   43 sec   (4145 perm/sec)   p_kst 5.555556e-06   p_cons 1.912222e-01   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.848311e-02	ci left: 1.896489e-01	ci right 1.931921e-01	k: 36369	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
NRAS   190000 perm   46 sec   (4089 perm/sec)   p_kst 5.263158e-06   p_cons 1.914158e-01   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.801139e-02	ci left: 1.897576e-01	ci right 1.932114e-01	k: 38296	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
NRAS   200000 perm   50 sec   (4036 perm/sec)   p_kst 5.000000e-06   p_cons 1.914800e-01   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.758755e-02	ci left: 1.896196e-01	ci right 1.929889e-01	k: 40173	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
NRAS   210000 perm   53 sec   (3982 perm/sec)   p_kst 4.761905e-06   p_cons 1.913000e-01   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.718244e-02	ci left: 1.896718e-01	ci right 1.929636e-01	k: 42089	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
NRAS   220000 perm   56 sec   (3924 perm/sec)   p_kst 4.545455e-06   p_cons 1.913136e-01   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.678782e-02	ci left: 1.900193e-01	ci right 1.932406e-01	k: 44074	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
NRAS   230000 perm   60 sec   (3866 perm/sec)   p_kst 4.347826e-06   p_cons 1.916261e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.642603e-02	ci left: 1.902099e-01	ci right 1.933642e-01	k: 46028	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
NRAS   240000 perm   63 sec   (3818 perm/sec)   p_kst 4.166667e-06   p_cons 1.917833e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.608562e-02	ci left: 1.904058e-01	ci right 1.934974e-01	k: 47987	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
NRAS   250000 perm   66 sec   (3770 perm/sec)   p_kst 4.000000e-06   p_cons 1.919480e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.576280e-02	ci left: 1.906409e-01	ci right 1.936736e-01	k: 49960	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
NRAS   260000 perm   70 sec   (3723 perm/sec)   p_kst 3.846154e-06   p_cons 1.921538e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.547305e-02	ci left: 1.905712e-01	ci right 1.935465e-01	k: 51855	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
NRAS   270000 perm   73 sec   (3678 perm/sec)   p_kst 3.703704e-06   p_cons 1.920556e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.518385e-02	ci left: 1.908096e-01	ci right 1.937325e-01	k: 53835	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
NRAS   280000 perm   77 sec   (3629 perm/sec)   p_kst 3.571429e-06   p_cons 1.922679e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.492055e-02	ci left: 1.908188e-01	ci right 1.936908e-01	k: 55753	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
NRAS   290000 perm   81 sec   (3586 perm/sec)   p_kst 3.448276e-06   p_cons 1.922517e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.467017e-02	ci left: 1.908345e-01	ci right 1.936581e-01	k: 57673	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
NRAS   300000 perm   85 sec   (3542 perm/sec)   p_kst 3.333333e-06   p_cons 1.922433e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.443588e-02	ci left: 1.907660e-01	ci right 1.935430e-01	k: 59567	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
NRAS   310000 perm   89 sec   (3496 perm/sec)   p_kst 3.225806e-06   p_cons 1.921516e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.421949e-02	ci left: 1.905493e-01	ci right 1.932813e-01	k: 61412	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
NRAS   320000 perm   93 sec   (3450 perm/sec)   p_kst 3.125000e-06   p_cons 1.919125e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.400446e-02	ci left: 1.905244e-01	ci right 1.932144e-01	k: 63316	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
NRAS   330000 perm   97 sec   (3406 perm/sec)   p_kst 3.030303e-06   p_cons 1.918667e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.379824e-02	ci left: 1.905159e-01	ci right 1.931658e-01	k: 65225	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
NRAS   340000 perm   101 sec   (3365 perm/sec)   p_kst 2.941176e-06   p_cons 1.918382e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.360213e-02	ci left: 1.904797e-01	ci right 1.930912e-01	k: 67124	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
NRAS   350000 perm   105 sec   (3325 perm/sec)   p_kst 2.857143e-06   p_cons 1.917829e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.341727e-02	ci left: 1.903737e-01	ci right 1.929480e-01	k: 68997	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
NRAS   360000 perm   110 sec   (3287 perm/sec)   p_kst 2.777778e-06   p_cons 1.916583e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.323536e-02	ci left: 1.903761e-01	ci right 1.929152e-01	k: 70908	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
NRAS   370000 perm   114 sec   (3247 perm/sec)   p_kst 2.702703e-06   p_cons 1.916432e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.306610e-02	ci left: 1.902500e-01	ci right 1.927547e-01	k: 72770	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
NRAS   380000 perm   119 sec   (3205 perm/sec)   p_kst 2.631579e-06   p_cons 1.915000e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.288726e-02	ci left: 1.905116e-01	ci right 1.929853e-01	k: 74781	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
NRAS   390000 perm   123 sec   (3167 perm/sec)   p_kst 2.564103e-06   p_cons 1.917462e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.272181e-02	ci left: 1.906083e-01	ci right 1.930512e-01	k: 76731	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
NRAS   400000 perm   128 sec   (3131 perm/sec)   p_kst 2.500000e-06   p_cons 1.918275e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.256238e-02	ci left: 1.907053e-01	ci right 1.931186e-01	k: 78683	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
NRAS   410000 perm   132 sec   (3095 perm/sec)   p_kst 2.439024e-06   p_cons 1.919098e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.241489e-02	ci left: 1.906459e-01	ci right 1.930298e-01	k: 80571	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
NRAS   420000 perm   137 sec   (3060 perm/sec)   p_kst 2.380952e-06   p_cons 1.918357e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.227837e-02	ci left: 1.904408e-01	ci right 1.927959e-01	k: 82395	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
NRAS   430000 perm   142 sec   (3025 perm/sec)   p_kst 2.325581e-06   p_cons 1.916163e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.214100e-02	ci left: 1.903791e-01	ci right 1.927068e-01	k: 84278	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
NRAS   440000 perm   147 sec   (2990 perm/sec)   p_kst 2.272727e-06   p_cons 1.915409e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.200486e-02	ci left: 1.904044e-01	ci right 1.927062e-01	k: 86199	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
NRAS   450000 perm   152 sec   (2957 perm/sec)   p_kst 2.222222e-06   p_cons 1.915533e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.187704e-02	ci left: 1.903291e-01	ci right 1.926053e-01	k: 88074	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
NRAS   460000 perm   157 sec   (2921 perm/sec)   p_kst 2.173913e-06   p_cons 1.914652e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.175588e-02	ci left: 1.901870e-01	ci right 1.924381e-01	k: 89916	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
NRAS   470000 perm   163 sec   (2883 perm/sec)   p_kst 2.127660e-06   p_cons 1.913106e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.162989e-02	ci left: 1.902754e-01	ci right 1.925033e-01	k: 91866	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
NRAS   480000 perm   168 sec   (2854 perm/sec)   p_kst 2.083333e-06   p_cons 1.913875e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.150681e-02	ci left: 1.903889e-01	ci right 1.925943e-01	k: 93830	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
NRAS   490000 perm   173 sec   (2826 perm/sec)   p_kst 2.040816e-06   p_cons 1.914898e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.139439e-02	ci left: 1.903123e-01	ci right 1.924952e-01	k: 95701	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
NRAS   500000 perm   179 sec   (2799 perm/sec)   p_kst 2.000000e-06   p_cons 1.914020e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.127899e-02	ci left: 1.904091e-01	ci right 1.925709e-01	k: 97659	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
NRAS   510000 perm   184 sec   (2771 perm/sec)   p_kst 1.960784e-06   p_cons 1.914882e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.117090e-02	ci left: 1.903948e-01	ci right 1.925355e-01	k: 99561	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
NRAS   520000 perm   190 sec   (2744 perm/sec)   p_kst 1.923077e-06   p_cons 1.914635e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.106412e-02	ci left: 1.904301e-01	ci right 1.925506e-01	k: 101489	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
NRAS   530000 perm   195 sec   (2718 perm/sec)   p_kst 1.886792e-06   p_cons 1.914887e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.096243e-02	ci left: 1.904050e-01	ci right 1.925057e-01	k: 103385	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
NRAS   540000 perm   200 sec   (2693 perm/sec)   p_kst 1.851852e-06   p_cons 1.914537e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.086114e-02	ci left: 1.904481e-01	ci right 1.925297e-01	k: 105318	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
NRAS   550000 perm   206 sec   (2667 perm/sec)   p_kst 1.818182e-06   p_cons 1.914873e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.076230e-02	ci left: 1.904986e-01	ci right 1.925617e-01	k: 107256	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
NRAS   560000 perm   212 sec   (2641 perm/sec)   p_kst 1.785714e-06   p_cons 1.915286e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.066779e-02	ci left: 1.904985e-01	ci right 1.925433e-01	k: 109166	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
NRAS   570000 perm   218 sec   (2615 perm/sec)   p_kst 1.754386e-06   p_cons 1.915193e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.057432e-02	ci left: 1.905397e-01	ci right 1.925669e-01	k: 111100	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
NRAS   580000 perm   224 sec   (2590 perm/sec)   p_kst 1.724138e-06   p_cons 1.915517e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.048476e-02	ci left: 1.905355e-01	ci right 1.925455e-01	k: 113008	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
NRAS   590000 perm   230 sec   (2566 perm/sec)   p_kst 1.694915e-06   p_cons 1.915390e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.040214e-02	ci left: 1.903919e-01	ci right 1.923844e-01	k: 114832	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
NRAS   600000 perm   236 sec   (2542 perm/sec)   p_kst 1.666667e-06   p_cons 1.913867e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.031733e-02	ci left: 1.903758e-01	ci right 1.923517e-01	k: 116731	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
NRAS   610000 perm   242 sec   (2519 perm/sec)   p_kst 1.639344e-06   p_cons 1.913623e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.023628e-02	ci left: 1.903087e-01	ci right 1.922684e-01	k: 118598	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
NRAS   620000 perm   249 sec   (2494 perm/sec)   p_kst 1.612903e-06   p_cons 1.912871e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.015335e-02	ci left: 1.903579e-01	ci right 1.923021e-01	k: 120537	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
NRAS   630000 perm   255 sec   (2472 perm/sec)   p_kst 1.587302e-06   p_cons 1.913286e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.007623e-02	ci left: 1.902886e-01	ci right 1.922173e-01	k: 122401	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
NRAS   640000 perm   261 sec   (2449 perm/sec)   p_kst 1.562500e-06   p_cons 1.912516e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 9.997897e-03	ci left: 1.903122e-01	ci right 1.922260e-01	k: 124324	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
NRAS   650000 perm   268 sec   (2425 perm/sec)   p_kst 1.538462e-06   p_cons 1.912677e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 9.919373e-03	ci left: 1.903971e-01	ci right 1.922966e-01	k: 126288	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
NRAS   660000 perm   275 sec   (2403 perm/sec)   p_kst 1.515152e-06   p_cons 1.913455e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 9.842576e-03	ci left: 1.904824e-01	ci right 1.923680e-01	k: 128254	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
NRAS   670000 perm   281 sec   (2382 perm/sec)   p_kst 1.492537e-06   p_cons 1.914239e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 9.768742e-03	ci left: 1.905272e-01	ci right 1.923990e-01	k: 130194	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
NRAS   680000 perm   288 sec   (2361 perm/sec)   p_kst 1.470588e-06   p_cons 1.914618e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 9.699631e-03	ci left: 1.904723e-01	ci right 1.923303e-01	k: 132066	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
NRAS   690000 perm   295 sec   (2340 perm/sec)   p_kst 1.449275e-06   p_cons 1.914000e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 9.631522e-03	ci left: 1.904333e-01	ci right 1.922778e-01	k: 133948	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
NRAS   700000 perm   302 sec   (2320 perm/sec)   p_kst 1.428571e-06   p_cons 1.913543e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 9.561955e-03	ci left: 1.904883e-01	ci right 1.923199e-01	k: 135896	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
NRAS   710000 perm   309 sec   (2300 perm/sec)   p_kst 1.408451e-06   p_cons 1.914028e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 9.492597e-03	ci left: 1.905834e-01	ci right 1.924025e-01	k: 137874	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
NRAS   720000 perm   316 sec   (2281 perm/sec)   p_kst 1.388889e-06   p_cons 1.914917e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 9.427268e-03	ci left: 1.905924e-01	ci right 1.923991e-01	k: 139791	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
NRAS   730000 perm   323 sec   (2263 perm/sec)   p_kst 1.369863e-06   p_cons 1.914945e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 9.367236e-03	ci left: 1.904705e-01	ci right 1.922644e-01	k: 141611	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
NRAS   740000 perm   330 sec   (2245 perm/sec)   p_kst 1.351351e-06   p_cons 1.913662e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 9.303884e-03	ci left: 1.904995e-01	ci right 1.922815e-01	k: 143542	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
NRAS   750000 perm   337 sec   (2228 perm/sec)   p_kst 1.333333e-06   p_cons 1.913893e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 9.245219e-03	ci left: 1.904136e-01	ci right 1.921835e-01	k: 145386	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
NRAS   760000 perm   344 sec   (2211 perm/sec)   p_kst 1.315789e-06   p_cons 1.912974e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 9.185682e-03	ci left: 1.903961e-01	ci right 1.921543e-01	k: 147281	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
NRAS   770000 perm   351 sec   (2194 perm/sec)   p_kst 1.298701e-06   p_cons 1.912740e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 9.130422e-03	ci left: 1.902728e-01	ci right 1.920193e-01	k: 149093	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
NRAS   780000 perm   358 sec   (2176 perm/sec)   p_kst 1.282051e-06   p_cons 1.911449e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 9.073657e-03	ci left: 1.902373e-01	ci right 1.919726e-01	k: 150972	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
NRAS   790000 perm   366 sec   (2158 perm/sec)   p_kst 1.265823e-06   p_cons 1.911038e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 9.016442e-03	ci left: 1.902539e-01	ci right 1.919783e-01	k: 152892	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
NRAS   800000 perm   374 sec   (2140 perm/sec)   p_kst 1.250000e-06   p_cons 1.911150e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 8.961119e-03	ci left: 1.902418e-01	ci right 1.919555e-01	k: 154789	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
NRAS   810000 perm   382 sec   (2122 perm/sec)   p_kst 1.234568e-06   p_cons 1.910975e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 8.907785e-03	ci left: 1.901959e-01	ci right 1.918989e-01	k: 156658	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
NRAS   820000 perm   389 sec   (2105 perm/sec)   p_kst 1.219512e-06   p_cons 1.910463e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 8.854530e-03	ci left: 1.901813e-01	ci right 1.918739e-01	k: 158552	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
NRAS   830000 perm   397 sec   (2089 perm/sec)   p_kst 1.204819e-06   p_cons 1.910265e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 8.800964e-03	ci left: 1.902110e-01	ci right 1.918936e-01	k: 160483	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
NRAS   840000 perm   405 sec   (2072 perm/sec)   p_kst 1.190476e-06   p_cons 1.910512e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 8.748392e-03	ci left: 1.902388e-01	ci right 1.919115e-01	k: 162413	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
NRAS   850000 perm   414 sec   (2055 perm/sec)   p_kst 1.176471e-06   p_cons 1.910741e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 8.697078e-03	ci left: 1.902544e-01	ci right 1.919174e-01	k: 164333	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
NRAS   860000 perm   425 sec   (2026 perm/sec)   p_kst 1.162791e-06   p_cons 1.910849e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 8.646143e-03	ci left: 1.902881e-01	ci right 1.919416e-01	k: 166269	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
NRAS   870000 perm   433 sec   (2008 perm/sec)   p_kst 1.149425e-06   p_cons 1.911138e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 8.597355e-03	ci left: 1.902756e-01	ci right 1.919196e-01	k: 168165	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
NRAS   880000 perm   442 sec   (1990 perm/sec)   p_kst 1.136364e-06   p_cons 1.910966e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 8.550130e-03	ci left: 1.902365e-01	ci right 1.918711e-01	k: 170037	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
NRAS   890000 perm   450 sec   (1976 perm/sec)   p_kst 1.123596e-06   p_cons 1.910528e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 8.502544e-03	ci left: 1.902394e-01	ci right 1.918649e-01	k: 171946	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
NRAS   900000 perm   460 sec   (1955 perm/sec)   p_kst 1.111111e-06   p_cons 1.910511e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 8.457247e-03	ci left: 1.901873e-01	ci right 1.918037e-01	k: 173805	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
NRAS   910000 perm   469 sec   (1942 perm/sec)   p_kst 1.098901e-06   p_cons 1.909945e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 8.412458e-03	ci left: 1.901440e-01	ci right 1.917514e-01	k: 175671	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
NRAS   920000 perm   477 sec   (1928 perm/sec)   p_kst 1.086957e-06   p_cons 1.909467e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 8.367122e-03	ci left: 1.901478e-01	ci right 1.917466e-01	k: 177580	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
NRAS   930000 perm   486 sec   (1915 perm/sec)   p_kst 1.075269e-06   p_cons 1.909462e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 8.320992e-03	ci left: 1.902079e-01	ci right 1.917983e-01	k: 179542	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
NRAS   940000 perm   495 sec   (1900 perm/sec)   p_kst 1.063830e-06   p_cons 1.910021e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 8.277111e-03	ci left: 1.902110e-01	ci right 1.917930e-01	k: 181451	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
NRAS   950000 perm   504 sec   (1886 perm/sec)   p_kst 1.052632e-06   p_cons 1.910011e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 8.235360e-03	ci left: 1.901600e-01	ci right 1.917335e-01	k: 183308	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
NRAS   960000 perm   513 sec   (1873 perm/sec)   p_kst 1.041667e-06   p_cons 1.909458e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 8.194179e-03	ci left: 1.901121e-01	ci right 1.916773e-01	k: 185167	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
NRAS   970000 perm   521 sec   (1860 perm/sec)   p_kst 1.030928e-06   p_cons 1.908938e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 8.151537e-03	ci left: 1.901437e-01	ci right 1.917010e-01	k: 187103	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
NRAS   980000 perm   531 sec   (1846 perm/sec)   p_kst 1.020408e-06   p_cons 1.909214e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 8.110163e-03	ci left: 1.901514e-01	ci right 1.917009e-01	k: 189016	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
NRAS   990000 perm   540 sec   (1834 perm/sec)   p_kst 1.010101e-06   p_cons 1.909253e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 8.069909e-03	ci left: 1.901401e-01	ci right 1.916817e-01	k: 190910	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
NRAS   1000000 perm   549 sec   (1822 perm/sec)   p_kst 1.000000e-06   p_cons 1.909100e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 8.029425e-03	ci left: 1.901606e-01	ci right 1.916946e-01	k: 192836	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
NRAS   1010000 perm   558 sec   (1810 perm/sec)   p_kst 9.900990e-07   p_cons 1.909267e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 7.990203e-03	ci left: 1.901553e-01	ci right 1.916817e-01	k: 194736	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
NRAS   1020000 perm   567 sec   (1798 perm/sec)   p_kst 9.803922e-07   p_cons 1.909176e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 7.952150e-03	ci left: 1.901269e-01	ci right 1.916458e-01	k: 196612	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
NRAS   1030000 perm   577 sec   (1786 perm/sec)   p_kst 9.708738e-07   p_cons 1.908854e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 7.914168e-03	ci left: 1.901172e-01	ci right 1.916287e-01	k: 198507	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
NRAS   1040000 perm   586 sec   (1775 perm/sec)   p_kst 9.615385e-07   p_cons 1.908721e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 7.877162e-03	ci left: 1.900906e-01	ci right 1.915949e-01	k: 200384	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
NRAS   1050000 perm   595 sec   (1765 perm/sec)   p_kst 9.523810e-07   p_cons 1.908419e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 7.839904e-03	ci left: 1.900947e-01	ci right 1.915919e-01	k: 202293	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
NRAS   1060000 perm   605 sec   (1753 perm/sec)   p_kst 9.433962e-07   p_cons 1.908425e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 7.804469e-03	ci left: 1.900475e-01	ci right 1.915374e-01	k: 204147	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
NRAS   1070000 perm   614 sec   (1741 perm/sec)   p_kst 9.345794e-07   p_cons 1.907916e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 7.768997e-03	ci left: 1.900214e-01	ci right 1.915043e-01	k: 206023	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
NRAS   1080000 perm   624 sec   (1730 perm/sec)   p_kst 9.259259e-07   p_cons 1.907620e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 7.734349e-03	ci left: 1.899821e-01	ci right 1.914581e-01	k: 207884	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
NRAS   1090000 perm   634 sec   (1719 perm/sec)   p_kst 9.174312e-07   p_cons 1.907193e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 7.698527e-03	ci left: 1.900089e-01	ci right 1.914782e-01	k: 209817	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
NRAS   1100000 perm   644 sec   (1708 perm/sec)   p_kst 9.090909e-07   p_cons 1.907427e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 7.663624e-03	ci left: 1.900181e-01	ci right 1.914808e-01	k: 211731	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
NRAS   1110000 perm   654 sec   (1697 perm/sec)   p_kst 9.009009e-07   p_cons 1.907486e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 7.630935e-03	ci left: 1.899567e-01	ci right 1.914127e-01	k: 213566	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
NRAS   1120000 perm   664 sec   (1687 perm/sec)   p_kst 8.928571e-07   p_cons 1.906839e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 7.597505e-03	ci left: 1.899433e-01	ci right 1.913928e-01	k: 215454	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
NRAS   1130000 perm   674 sec   (1675 perm/sec)   p_kst 8.849558e-07   p_cons 1.906673e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 7.562447e-03	ci left: 1.900142e-01	ci right 1.914575e-01	k: 217438	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
NRAS   1140000 perm   684 sec   (1666 perm/sec)   p_kst 8.771930e-07   p_cons 1.907351e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 7.529121e-03	ci left: 1.900327e-01	ci right 1.914697e-01	k: 219363	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
NRAS   1150000 perm   695 sec   (1656 perm/sec)   p_kst 8.695652e-07   p_cons 1.907504e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 7.496818e-03	ci left: 1.900268e-01	ci right 1.914575e-01	k: 221260	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
NRAS   1160000 perm   705 sec   (1646 perm/sec)   p_kst 8.620690e-07   p_cons 1.907414e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 7.464369e-03	ci left: 1.900440e-01	ci right 1.914687e-01	k: 223184	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
NRAS   1170000 perm   715 sec   (1635 perm/sec)   p_kst 8.547009e-07   p_cons 1.907556e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 7.432379e-03	ci left: 1.900592e-01	ci right 1.914779e-01	k: 225106	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
NRAS   1180000 perm   726 sec   (1625 perm/sec)   p_kst 8.474576e-07   p_cons 1.907678e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 7.401138e-03	ci left: 1.900599e-01	ci right 1.914726e-01	k: 227011	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
NRAS   1190000 perm   738 sec   (1613 perm/sec)   p_kst 8.403361e-07   p_cons 1.907655e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 7.369394e-03	ci left: 1.900981e-01	ci right 1.915050e-01	k: 228961	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
NRAS   1200000 perm   750 sec   (1600 perm/sec)   p_kst 8.333333e-07   p_cons 1.908008e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 7.337936e-03	ci left: 1.901406e-01	ci right 1.915418e-01	k: 230917	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
NRAS   1210000 perm   763 sec   (1586 perm/sec)   p_kst 8.264463e-07   p_cons 1.908405e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 7.308216e-03	ci left: 1.901260e-01	ci right 1.915214e-01	k: 232804	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
NRAS   1220000 perm   773 sec   (1578 perm/sec)   p_kst 8.196721e-07   p_cons 1.908230e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 7.279793e-03	ci left: 1.900718e-01	ci right 1.914613e-01	k: 234642	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
NRAS   1230000 perm   784 sec   (1570 perm/sec)   p_kst 8.130081e-07   p_cons 1.907659e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 7.250430e-03	ci left: 1.900725e-01	ci right 1.914564e-01	k: 236547	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
NRAS   1240000 perm   794 sec   (1561 perm/sec)   p_kst 8.064516e-07   p_cons 1.907637e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 7.222112e-03	ci left: 1.900436e-01	ci right 1.914218e-01	k: 238415	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
NRAS   1250000 perm   805 sec   (1553 perm/sec)   p_kst 8.000000e-07   p_cons 1.907320e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 7.193310e-03	ci left: 1.900500e-01	ci right 1.914228e-01	k: 240327	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
NRAS   1260000 perm   815 sec   (1545 perm/sec)   p_kst 7.936508e-07   p_cons 1.907357e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 7.166001e-03	ci left: 1.900068e-01	ci right 1.913741e-01	k: 242176	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
NRAS   1270000 perm   826 sec   (1537 perm/sec)   p_kst 7.874016e-07   p_cons 1.906898e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 7.136308e-03	ci left: 1.900806e-01	ci right 1.914427e-01	k: 244174	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
NRAS   1280000 perm   837 sec   (1529 perm/sec)   p_kst 7.812500e-07   p_cons 1.907609e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 7.108587e-03	ci left: 1.900835e-01	ci right 1.914403e-01	k: 246082	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
NRAS   1290000 perm   849 sec   (1520 perm/sec)   p_kst 7.751938e-07   p_cons 1.907612e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 7.082987e-03	ci left: 1.900081e-01	ci right 1.913594e-01	k: 247888	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
NRAS   1300000 perm   860 sec   (1511 perm/sec)   p_kst 7.692308e-07   p_cons 1.906831e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 7.055881e-03	ci left: 1.900116e-01	ci right 1.913577e-01	k: 249796	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
NRAS   1310000 perm   872 sec   (1503 perm/sec)   p_kst 7.633588e-07   p_cons 1.906840e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 7.029497e-03	ci left: 1.899968e-01	ci right 1.913379e-01	k: 251680	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
NRAS   1320000 perm   883 sec   (1494 perm/sec)   p_kst 7.575758e-07   p_cons 1.906667e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 7.003459e-03	ci left: 1.899801e-01	ci right 1.913160e-01	k: 253561	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
NRAS   1330000 perm   895 sec   (1486 perm/sec)   p_kst 7.518797e-07   p_cons 1.906474e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 6.977387e-03	ci left: 1.899778e-01	ci right 1.913087e-01	k: 255461	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
NRAS   1340000 perm   906 sec   (1479 perm/sec)   p_kst 7.462687e-07   p_cons 1.906425e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 6.951604e-03	ci left: 1.899755e-01	ci right 1.913014e-01	k: 257361	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
NRAS   1350000 perm   918 sec   (1471 perm/sec)   p_kst 7.407407e-07   p_cons 1.906378e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 6.924835e-03	ci left: 1.900298e-01	ci right 1.913510e-01	k: 259338	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
NRAS   1360000 perm   930 sec   (1463 perm/sec)   p_kst 7.352941e-07   p_cons 1.906897e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 6.899220e-03	ci left: 1.900454e-01	ci right 1.913618e-01	k: 261263	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
NRAS   1370000 perm   941 sec   (1456 perm/sec)   p_kst 7.299270e-07   p_cons 1.907029e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 6.873968e-03	ci left: 1.900571e-01	ci right 1.913688e-01	k: 263183	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
NRAS   1380000 perm   953 sec   (1448 perm/sec)   p_kst 7.246377e-07   p_cons 1.907123e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 6.848050e-03	ci left: 1.901111e-01	ci right 1.914182e-01	k: 265162	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
NRAS   1390000 perm   965 sec   (1440 perm/sec)   p_kst 7.194245e-07   p_cons 1.907640e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 6.823527e-03	ci left: 1.901144e-01	ci right 1.914168e-01	k: 267071	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
NRAS   1400000 perm   977 sec   (1433 perm/sec)   p_kst 7.142857e-07   p_cons 1.907650e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 6.798579e-03	ci left: 1.901489e-01	ci right 1.914467e-01	k: 269024	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
NRAS   1410000 perm   989 sec   (1425 perm/sec)   p_kst 7.092199e-07   p_cons 1.907972e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 6.774444e-03	ci left: 1.901582e-01	ci right 1.914515e-01	k: 270942	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
NRAS   1420000 perm   1002 sec   (1418 perm/sec)   p_kst 7.042254e-07   p_cons 1.908042e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 6.751587e-03	ci left: 1.901206e-01	ci right 1.914093e-01	k: 272793	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
NRAS   1430000 perm   1014 sec   (1411 perm/sec)   p_kst 6.993007e-07   p_cons 1.907643e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 6.728401e-03	ci left: 1.901093e-01	ci right 1.913934e-01	k: 274681	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
NRAS   1440000 perm   1026 sec   (1404 perm/sec)   p_kst 6.944444e-07   p_cons 1.907507e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 6.704643e-03	ci left: 1.901352e-01	ci right 1.914150e-01	k: 276623	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
NRAS   1450000 perm   1038 sec   (1397 perm/sec)   p_kst 6.896552e-07   p_cons 1.907745e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 6.681772e-03	ci left: 1.901314e-01	ci right 1.914068e-01	k: 278522	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
NRAS   1460000 perm   1050 sec   (1391 perm/sec)   p_kst 6.849315e-07   p_cons 1.907685e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 6.657652e-03	ci left: 1.901963e-01	ci right 1.914675e-01	k: 280522	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
NRAS   1470000 perm   1062 sec   (1384 perm/sec)   p_kst 6.802721e-07   p_cons 1.908313e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 6.634851e-03	ci left: 1.902111e-01	ci right 1.914780e-01	k: 282449	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
NRAS   1480000 perm   1074 sec   (1378 perm/sec)   p_kst 6.756757e-07   p_cons 1.908439e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 6.612800e-03	ci left: 1.902015e-01	ci right 1.914641e-01	k: 284340	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
NRAS   1490000 perm   1087 sec   (1371 perm/sec)   p_kst 6.711409e-07   p_cons 1.908322e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 6.590312e-03	ci left: 1.902227e-01	ci right 1.914811e-01	k: 286277	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
NRAS   1500000 perm   1100 sec   (1364 perm/sec)   p_kst 6.666667e-07   p_cons 1.908513e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 6.568616e-03	ci left: 1.902172e-01	ci right 1.914714e-01	k: 288174	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
NRAS   1510000 perm   1113 sec   (1357 perm/sec)   p_kst 6.622517e-07   p_cons 1.908437e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 6.546798e-03	ci left: 1.902275e-01	ci right 1.914776e-01	k: 290095	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
NRAS   1520000 perm   1125 sec   (1351 perm/sec)   p_kst 6.578947e-07   p_cons 1.908520e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 6.525831e-03	ci left: 1.902077e-01	ci right 1.914536e-01	k: 291970	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
NRAS   1530000 perm   1138 sec   (1344 perm/sec)   p_kst 6.535948e-07   p_cons 1.908301e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 6.504216e-03	ci left: 1.902283e-01	ci right 1.914703e-01	k: 293907	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
NRAS   1540000 perm   1151 sec   (1338 perm/sec)   p_kst 6.493506e-07   p_cons 1.908487e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 6.483750e-03	ci left: 1.902042e-01	ci right 1.914421e-01	k: 295775	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
NRAS   1550000 perm   1164 sec   (1331 perm/sec)   p_kst 6.451613e-07   p_cons 1.908226e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 6.463059e-03	ci left: 1.902003e-01	ci right 1.914342e-01	k: 297674	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
NRAS   1560000 perm   1177 sec   (1325 perm/sec)   p_kst 6.410256e-07   p_cons 1.908167e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 6.441927e-03	ci left: 1.902270e-01	ci right 1.914570e-01	k: 299621	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
NRAS   1570000 perm   1190 sec   (1319 perm/sec)   p_kst 6.369427e-07   p_cons 1.908414e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 6.421277e-03	ci left: 1.902400e-01	ci right 1.914662e-01	k: 301547	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
NRAS   1580000 perm   1204 sec   (1312 perm/sec)   p_kst 6.329114e-07   p_cons 1.908525e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 6.401633e-03	ci left: 1.902140e-01	ci right 1.914362e-01	k: 303411	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
NRAS   1590000 perm   1217 sec   (1306 perm/sec)   p_kst 6.289308e-07   p_cons 1.908245e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 6.382517e-03	ci left: 1.901714e-01	ci right 1.913897e-01	k: 305248	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
NRAS   1600000 perm   1231 sec   (1300 perm/sec)   p_kst 6.250000e-07   p_cons 1.907800e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 6.362522e-03	ci left: 1.901803e-01	ci right 1.913948e-01	k: 307167	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
NRAS   1610000 perm   1245 sec   (1294 perm/sec)   p_kst 6.211180e-07   p_cons 1.907870e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 6.342751e-03	ci left: 1.901872e-01	ci right 1.913979e-01	k: 309083	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
NRAS   1620000 perm   1258 sec   (1288 perm/sec)   p_kst 6.172840e-07   p_cons 1.907920e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 6.323075e-03	ci left: 1.901983e-01	ci right 1.914053e-01	k: 311006	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
NRAS   1630000 perm   1272 sec   (1282 perm/sec)   p_kst 6.134969e-07   p_cons 1.908012e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 6.303669e-03	ci left: 1.902050e-01	ci right 1.914083e-01	k: 312922	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
NRAS   1640000 perm   1285 sec   (1276 perm/sec)   p_kst 6.097561e-07   p_cons 1.908061e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 6.283811e-03	ci left: 1.902425e-01	ci right 1.914423e-01	k: 314889	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
NRAS   1650000 perm   1300 sec   (1270 perm/sec)   p_kst 6.060606e-07   p_cons 1.908418e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 6.265117e-03	ci left: 1.902314e-01	ci right 1.914275e-01	k: 316776	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
NRAS   1660000 perm   1314 sec   (1263 perm/sec)   p_kst 6.024096e-07   p_cons 1.908289e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 6.246068e-03	ci left: 1.902462e-01	ci right 1.914387e-01	k: 318706	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
NRAS   1670000 perm   1328 sec   (1257 perm/sec)   p_kst 5.988024e-07   p_cons 1.908419e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 6.227276e-03	ci left: 1.902566e-01	ci right 1.914457e-01	k: 320629	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
NRAS   1680000 perm   1342 sec   (1252 perm/sec)   p_kst 5.952381e-07   p_cons 1.908506e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 6.209521e-03	ci left: 1.902238e-01	ci right 1.914092e-01	k: 322479	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
NRAS   1690000 perm   1356 sec   (1246 perm/sec)   p_kst 5.917160e-07   p_cons 1.908160e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 6.190643e-03	ci left: 1.902548e-01	ci right 1.914368e-01	k: 324437	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
NRAS   1700000 perm   1370 sec   (1241 perm/sec)   p_kst 5.882353e-07   p_cons 1.908453e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 6.172673e-03	ci left: 1.902487e-01	ci right 1.914272e-01	k: 326332	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
NRAS   1710000 perm   1384 sec   (1235 perm/sec)   p_kst 5.847953e-07   p_cons 1.908374e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 6.155368e-03	ci left: 1.902171e-01	ci right 1.913921e-01	k: 328183	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
NRAS   1720000 perm   1398 sec   (1230 perm/sec)   p_kst 5.813953e-07   p_cons 1.908041e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 6.138173e-03	ci left: 1.901876e-01	ci right 1.913591e-01	k: 330037	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
NRAS   1730000 perm   1413 sec   (1224 perm/sec)   p_kst 5.780347e-07   p_cons 1.907728e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 6.120460e-03	ci left: 1.901917e-01	ci right 1.913599e-01	k: 331949	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
NRAS   1740000 perm   1427 sec   (1219 perm/sec)   p_kst 5.747126e-07   p_cons 1.907753e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 6.103115e-03	ci left: 1.901850e-01	ci right 1.913498e-01	k: 333842	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
NRAS   1750000 perm   1442 sec   (1214 perm/sec)   p_kst 5.714286e-07   p_cons 1.907669e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 6.085166e-03	ci left: 1.902163e-01	ci right 1.913779e-01	k: 335802	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
NRAS   1760000 perm   1456 sec   (1209 perm/sec)   p_kst 5.681818e-07   p_cons 1.907966e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 6.068240e-03	ci left: 1.902033e-01	ci right 1.913616e-01	k: 337684	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
NRAS   1770000 perm   1470 sec   (1204 perm/sec)   p_kst 5.649718e-07   p_cons 1.907819e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 6.051334e-03	ci left: 1.901966e-01	ci right 1.913516e-01	k: 339577	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
NRAS   1780000 perm   1485 sec   (1199 perm/sec)   p_kst 5.617978e-07   p_cons 1.907736e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 6.034295e-03	ci left: 1.902040e-01	ci right 1.913557e-01	k: 341495	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
NRAS   1790000 perm   1500 sec   (1194 perm/sec)   p_kst 5.586592e-07   p_cons 1.907793e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 6.017139e-03	ci left: 1.902245e-01	ci right 1.913731e-01	k: 343437	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
NRAS   1800000 perm   1515 sec   (1188 perm/sec)   p_kst 5.555556e-07   p_cons 1.907983e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 6.000494e-03	ci left: 1.902261e-01	ci right 1.913715e-01	k: 345345	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
NRAS   1810000 perm   1531 sec   (1182 perm/sec)   p_kst 5.524862e-07   p_cons 1.907983e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 5.983656e-03	ci left: 1.902447e-01	ci right 1.913870e-01	k: 347284	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
NRAS   1820000 perm   1546 sec   (1177 perm/sec)   p_kst 5.494505e-07   p_cons 1.908154e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 5.967445e-03	ci left: 1.902380e-01	ci right 1.913772e-01	k: 349177	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
NRAS   1830000 perm   1561 sec   (1172 perm/sec)   p_kst 5.464481e-07   p_cons 1.908071e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 5.951114e-03	ci left: 1.902444e-01	ci right 1.913805e-01	k: 351094	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
NRAS   1840000 perm   1576 sec   (1168 perm/sec)   p_kst 5.434783e-07   p_cons 1.908120e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 5.935103e-03	ci left: 1.902410e-01	ci right 1.913740e-01	k: 352993	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
NRAS   1850000 perm   1590 sec   (1163 perm/sec)   p_kst 5.405405e-07   p_cons 1.908070e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 5.919684e-03	ci left: 1.902135e-01	ci right 1.913434e-01	k: 354847	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
NRAS   1860000 perm   1605 sec   (1159 perm/sec)   p_kst 5.376344e-07   p_cons 1.907780e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 5.903792e-03	ci left: 1.902173e-01	ci right 1.913441e-01	k: 356759	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
NRAS   1870000 perm   1620 sec   (1154 perm/sec)   p_kst 5.347594e-07   p_cons 1.907802e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 5.888290e-03	ci left: 1.902072e-01	ci right 1.913310e-01	k: 358645	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
NRAS   1880000 perm   1636 sec   (1149 perm/sec)   p_kst 5.319149e-07   p_cons 1.907686e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 5.872709e-03	ci left: 1.902078e-01	ci right 1.913286e-01	k: 360551	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
NRAS   1890000 perm   1652 sec   (1144 perm/sec)   p_kst 5.291005e-07   p_cons 1.907677e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 5.857880e-03	ci left: 1.901753e-01	ci right 1.912931e-01	k: 362394	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
NRAS   1900000 perm   1668 sec   (1139 perm/sec)   p_kst 5.263158e-07   p_cons 1.907337e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 5.842113e-03	ci left: 1.901985e-01	ci right 1.913134e-01	k: 364343	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
NRAS   1910000 perm   1686 sec   (1133 perm/sec)   p_kst 5.235602e-07   p_cons 1.907555e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 5.827347e-03	ci left: 1.901752e-01	ci right 1.912872e-01	k: 366203	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
NRAS   1920000 perm   1702 sec   (1128 perm/sec)   p_kst 5.208333e-07   p_cons 1.907307e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 5.812633e-03	ci left: 1.901553e-01	ci right 1.912643e-01	k: 368069	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
NRAS   1930000 perm   1719 sec   (1123 perm/sec)   p_kst 5.181347e-07   p_cons 1.907093e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 5.797769e-03	ci left: 1.901495e-01	ci right 1.912556e-01	k: 369962	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
NRAS   1940000 perm   1734 sec   (1119 perm/sec)   p_kst 5.154639e-07   p_cons 1.907021e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 5.783038e-03	ci left: 1.901427e-01	ci right 1.912459e-01	k: 371853	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
NRAS   1950000 perm   1750 sec   (1114 perm/sec)   p_kst 5.128205e-07   p_cons 1.906938e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 5.768648e-03	ci left: 1.901237e-01	ci right 1.912241e-01	k: 373720	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
NRAS   1960000 perm   1766 sec   (1110 perm/sec)   p_kst 5.102041e-07   p_cons 1.906735e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 5.753824e-03	ci left: 1.901339e-01	ci right 1.912315e-01	k: 375644	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
NRAS   1970000 perm   1782 sec   (1105 perm/sec)   p_kst 5.076142e-07   p_cons 1.906822e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 5.739265e-03	ci left: 1.901358e-01	ci right 1.912307e-01	k: 377552	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
NRAS   1980000 perm   1798 sec   (1101 perm/sec)   p_kst 5.050505e-07   p_cons 1.906828e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 5.724564e-03	ci left: 1.901514e-01	ci right 1.912435e-01	k: 379487	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
NRAS   1990000 perm   1814 sec   (1097 perm/sec)   p_kst 5.025126e-07   p_cons 1.906970e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 5.710040e-03	ci left: 1.901632e-01	ci right 1.912527e-01	k: 381415	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
NRAS   2000000 perm   1830 sec   (1093 perm/sec)   p_kst 5.000000e-07   p_cons 1.907075e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 5.695636e-03	ci left: 1.901745e-01	ci right 1.912612e-01	k: 383342	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
NRAS   2010000 perm   1846 sec   (1089 perm/sec)   p_kst 4.975124e-07   p_cons 1.907174e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 5.681121e-03	ci left: 1.901975e-01	ci right 1.912816e-01	k: 385293	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
NRAS   2020000 perm   1862 sec   (1085 perm/sec)   p_kst 4.950495e-07   p_cons 1.907391e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 5.666346e-03	ci left: 1.902405e-01	ci right 1.913220e-01	k: 387285	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
NRAS   2030000 perm   1879 sec   (1080 perm/sec)   p_kst 4.926108e-07   p_cons 1.907808e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 5.652152e-03	ci left: 1.902576e-01	ci right 1.913364e-01	k: 389225	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
NRAS   2040000 perm   1895 sec   (1076 perm/sec)   p_kst 4.901961e-07   p_cons 1.907966e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 5.638171e-03	ci left: 1.902686e-01	ci right 1.913449e-01	k: 391153	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
NRAS   2050000 perm   1913 sec   (1072 perm/sec)   p_kst 4.878049e-07   p_cons 1.908063e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 5.624567e-03	ci left: 1.902646e-01	ci right 1.913382e-01	k: 393050	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
NRAS   2060000 perm   1930 sec   (1067 perm/sec)   p_kst 4.854369e-07   p_cons 1.908010e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 5.610596e-03	ci left: 1.902861e-01	ci right 1.913572e-01	k: 395000	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
NRAS   2070000 perm   1948 sec   (1062 perm/sec)   p_kst 4.830918e-07   p_cons 1.908213e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 5.597008e-03	ci left: 1.902921e-01	ci right 1.913607e-01	k: 396918	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
NRAS   2080000 perm   1966 sec   (1058 perm/sec)   p_kst 4.807692e-07   p_cons 1.908260e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 5.583396e-03	ci left: 1.903048e-01	ci right 1.913707e-01	k: 398850	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
NRAS   2090000 perm   1983 sec   (1054 perm/sec)   p_kst 4.784689e-07   p_cons 1.908373e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 5.570021e-03	ci left: 1.903097e-01	ci right 1.913731e-01	k: 400766	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
NRAS   2100000 perm   2000 sec   (1050 perm/sec)   p_kst 4.761905e-07   p_cons 1.908410e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 5.556640e-03	ci left: 1.903202e-01	ci right 1.913811e-01	k: 402694	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
NRAS   2110000 perm   2018 sec   (1045 perm/sec)   p_kst 4.739336e-07   p_cons 1.908502e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 5.543692e-03	ci left: 1.903118e-01	ci right 1.913702e-01	k: 404582	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
NRAS   2120000 perm   2036 sec   (1041 perm/sec)   p_kst 4.716981e-07   p_cons 1.908406e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 5.530104e-03	ci left: 1.903443e-01	ci right 1.914002e-01	k: 406557	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
NRAS   2130000 perm   2054 sec   (1037 perm/sec)   p_kst 4.694836e-07   p_cons 1.908718e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 5.517116e-03	ci left: 1.903484e-01	ci right 1.914019e-01	k: 408472	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
NRAS   2140000 perm   2072 sec   (1033 perm/sec)   p_kst 4.672897e-07   p_cons 1.908748e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 5.503986e-03	ci left: 1.903656e-01	ci right 1.914167e-01	k: 410415	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
NRAS   2150000 perm   2090 sec   (1029 perm/sec)   p_kst 4.651163e-07   p_cons 1.908907e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 5.491148e-03	ci left: 1.903714e-01	ci right 1.914201e-01	k: 412334	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
NRAS   2160000 perm   2107 sec   (1025 perm/sec)   p_kst 4.629630e-07   p_cons 1.908954e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 5.478431e-03	ci left: 1.903754e-01	ci right 1.914217e-01	k: 414249	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
NRAS   2170000 perm   2125 sec   (1021 perm/sec)   p_kst 4.608295e-07   p_cons 1.908982e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 5.466152e-03	ci left: 1.903597e-01	ci right 1.914035e-01	k: 416121	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
NRAS   2180000 perm   2143 sec   (1017 perm/sec)   p_kst 4.587156e-07   p_cons 1.908812e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 5.453568e-03	ci left: 1.903660e-01	ci right 1.914074e-01	k: 418041	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
NRAS   2190000 perm   2161 sec   (1013 perm/sec)   p_kst 4.566210e-07   p_cons 1.908863e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 5.440998e-03	ci left: 1.903763e-01	ci right 1.914154e-01	k: 419970	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
NRAS   2200000 perm   2179 sec   (1009 perm/sec)   p_kst 4.545455e-07   p_cons 1.908955e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 5.428531e-03	ci left: 1.903856e-01	ci right 1.914224e-01	k: 421897	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
NRAS   2210000 perm   2197 sec   (1006 perm/sec)   p_kst 4.524887e-07   p_cons 1.909036e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 5.416062e-03	ci left: 1.903998e-01	ci right 1.914343e-01	k: 423835	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
NRAS   2220000 perm   2216 sec   (1002 perm/sec)   p_kst 4.504505e-07   p_cons 1.909167e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 5.403804e-03	ci left: 1.904068e-01	ci right 1.914389e-01	k: 425757	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
NRAS   2230000 perm   2234 sec   (998 perm/sec)   p_kst 4.484305e-07   p_cons 1.909224e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 5.392151e-03	ci left: 1.903837e-01	ci right 1.914135e-01	k: 427612	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
NRAS   2240000 perm   2252 sec   (995 perm/sec)   p_kst 4.464286e-07   p_cons 1.908982e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 5.380534e-03	ci left: 1.903631e-01	ci right 1.913906e-01	k: 429472	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
NRAS   2250000 perm   2270 sec   (991 perm/sec)   p_kst 4.444444e-07   p_cons 1.908764e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 5.369431e-03	ci left: 1.903175e-01	ci right 1.913426e-01	k: 431275	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
NRAS   2260000 perm   2288 sec   (988 perm/sec)   p_kst 4.424779e-07   p_cons 1.908296e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 5.357310e-03	ci left: 1.903348e-01	ci right 1.913576e-01	k: 433220	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
NRAS   2270000 perm   2306 sec   (984 perm/sec)   p_kst 4.405286e-07   p_cons 1.908458e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 5.345066e-03	ci left: 1.903638e-01	ci right 1.913844e-01	k: 435192	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
NRAS   2280000 perm   2326 sec   (980 perm/sec)   p_kst 4.385965e-07   p_cons 1.908737e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 5.333449e-03	ci left: 1.903611e-01	ci right 1.913795e-01	k: 437092	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
NRAS   2290000 perm   2345 sec   (977 perm/sec)   p_kst 4.366812e-07   p_cons 1.908699e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 5.321660e-03	ci left: 1.903727e-01	ci right 1.913889e-01	k: 439025	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
NRAS   2300000 perm   2363 sec   (973 perm/sec)   p_kst 4.347826e-07   p_cons 1.908804e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 5.310321e-03	ci left: 1.903627e-01	ci right 1.913766e-01	k: 440908	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
NRAS   2310000 perm   2381 sec   (970 perm/sec)   p_kst 4.329004e-07   p_cons 1.908693e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 5.299091e-03	ci left: 1.903505e-01	ci right 1.913623e-01	k: 442786	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
NRAS   2320000 perm   2400 sec   (967 perm/sec)   p_kst 4.310345e-07   p_cons 1.908560e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 5.287542e-03	ci left: 1.903612e-01	ci right 1.913709e-01	k: 444717	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
NRAS   2330000 perm   2418 sec   (964 perm/sec)   p_kst 4.291845e-07   p_cons 1.908657e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 5.276222e-03	ci left: 1.903629e-01	ci right 1.913704e-01	k: 446627	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
NRAS   2340000 perm   2437 sec   (960 perm/sec)   p_kst 4.273504e-07   p_cons 1.908662e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 5.265824e-03	ci left: 1.903148e-01	ci right 1.913200e-01	k: 448420	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
NRAS   2350000 perm   2456 sec   (957 perm/sec)   p_kst 4.255319e-07   p_cons 1.908170e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 5.254628e-03	ci left: 1.903175e-01	ci right 1.913206e-01	k: 450332	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
NRAS   2360000 perm   2476 sec   (953 perm/sec)   p_kst 4.237288e-07   p_cons 1.908186e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 5.242887e-03	ci left: 1.903564e-01	ci right 1.913574e-01	k: 452330	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
NRAS   2370000 perm   2495 sec   (950 perm/sec)   p_kst 4.219409e-07   p_cons 1.908565e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 5.232036e-03	ci left: 1.903471e-01	ci right 1.913461e-01	k: 454214	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
NRAS   2380000 perm   2515 sec   (946 perm/sec)   p_kst 4.201681e-07   p_cons 1.908462e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 5.221365e-03	ci left: 1.903313e-01	ci right 1.913281e-01	k: 456082	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
NRAS   2390000 perm   2535 sec   (943 perm/sec)   p_kst 4.184100e-07   p_cons 1.908293e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 5.210351e-03	ci left: 1.903397e-01	ci right 1.913344e-01	k: 458008	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
NRAS   2400000 perm   2575 sec   (932 perm/sec)   p_kst 4.166667e-07   p_cons 1.908367e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 5.199868e-03	ci left: 1.903207e-01	ci right 1.913133e-01	k: 459868	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
NRAS   2410000 perm   2614 sec   (922 perm/sec)   p_kst 4.149378e-07   p_cons 1.908166e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 5.188879e-03	ci left: 1.903357e-01	ci right 1.913262e-01	k: 461810	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
NRAS   2420000 perm   2641 sec   (916 perm/sec)   p_kst 4.132231e-07   p_cons 1.908306e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 5.178586e-03	ci left: 1.903131e-01	ci right 1.913016e-01	k: 463661	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
NRAS   2430000 perm   2680 sec   (907 perm/sec)   p_kst 4.115226e-07   p_cons 1.908070e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 5.167854e-03	ci left: 1.903206e-01	ci right 1.913071e-01	k: 465585	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
NRAS   2440000 perm   2706 sec   (902 perm/sec)   p_kst 4.098361e-07   p_cons 1.908135e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 5.157530e-03	ci left: 1.903077e-01	ci right 1.912922e-01	k: 467459	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
NRAS   2450000 perm   2727 sec   (898 perm/sec)   p_kst 4.081633e-07   p_cons 1.907996e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 5.146691e-03	ci left: 1.903294e-01	ci right 1.913119e-01	k: 469418	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
NRAS   2460000 perm   2748 sec   (895 perm/sec)   p_kst 4.065041e-07   p_cons 1.908203e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 5.136310e-03	ci left: 1.903275e-01	ci right 1.913080e-01	k: 471319	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
NRAS   2470000 perm   2769 sec   (892 perm/sec)   p_kst 4.048583e-07   p_cons 1.908174e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 5.126126e-03	ci left: 1.903176e-01	ci right 1.912961e-01	k: 473200	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
NRAS   2480000 perm   2790 sec   (889 perm/sec)   p_kst 4.032258e-07   p_cons 1.908065e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 5.115876e-03	ci left: 1.903153e-01	ci right 1.912918e-01	k: 475100	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
NRAS   2490000 perm   2812 sec   (886 perm/sec)   p_kst 4.016064e-07   p_cons 1.908032e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 5.105826e-03	ci left: 1.903047e-01	ci right 1.912792e-01	k: 476979	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
NRAS   2500000 perm   2833 sec   (883 perm/sec)   p_kst 4.000000e-07   p_cons 1.907916e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 5.095664e-03	ci left: 1.903045e-01	ci right 1.912771e-01	k: 478884	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
NRAS   2510000 perm   2853 sec   (880 perm/sec)   p_kst 3.984064e-07   p_cons 1.907904e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 5.085510e-03	ci left: 1.903075e-01	ci right 1.912781e-01	k: 480797	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
NRAS   2520000 perm   2874 sec   (877 perm/sec)   p_kst 3.968254e-07   p_cons 1.907925e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 5.075619e-03	ci left: 1.902982e-01	ci right 1.912669e-01	k: 482679	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
NRAS   2530000 perm   2894 sec   (874 perm/sec)   p_kst 3.952569e-07   p_cons 1.907822e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 5.065390e-03	ci left: 1.903130e-01	ci right 1.912798e-01	k: 484622	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
NRAS   2540000 perm   2915 sec   (871 perm/sec)   p_kst 3.937008e-07   p_cons 1.907961e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 5.055808e-03	ci left: 1.902920e-01	ci right 1.912569e-01	k: 486474	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
NRAS   2550000 perm   2937 sec   (868 perm/sec)   p_kst 3.921569e-07   p_cons 1.907741e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 5.046132e-03	ci left: 1.902802e-01	ci right 1.912432e-01	k: 488349	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
NRAS   2560000 perm   2967 sec   (863 perm/sec)   p_kst 3.906250e-07   p_cons 1.907613e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 5.036424e-03	ci left: 1.902739e-01	ci right 1.912350e-01	k: 490238	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
NRAS   2570000 perm   3011 sec   (854 perm/sec)   p_kst 3.891051e-07   p_cons 1.907541e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 5.026259e-03	ci left: 1.902990e-01	ci right 1.912583e-01	k: 492208	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
NRAS   2580000 perm   3041 sec   (848 perm/sec)   p_kst 3.875969e-07   p_cons 1.907783e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 5.016665e-03	ci left: 1.902927e-01	ci right 1.912501e-01	k: 494097	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
NRAS   2590000 perm   3070 sec   (844 perm/sec)   p_kst 3.861004e-07   p_cons 1.907710e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 5.007387e-03	ci left: 1.902703e-01	ci right 1.912258e-01	k: 495944	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
NRAS   2600000 perm   3105 sec   (837 perm/sec)   p_kst 3.846154e-07   p_cons 1.907477e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 4.997918e-03	ci left: 1.902630e-01	ci right 1.912166e-01	k: 497830	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
NRAS   2610000 perm   3129 sec   (834 perm/sec)   p_kst 3.831418e-07   p_cons 1.907395e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 4.988540e-03	ci left: 1.902534e-01	ci right 1.912053e-01	k: 499710	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
NRAS   2620000 perm   3152 sec   (831 perm/sec)   p_kst 3.816794e-07   p_cons 1.907290e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 4.978853e-03	ci left: 1.902664e-01	ci right 1.912164e-01	k: 501649	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
NRAS   2630000 perm   3174 sec   (829 perm/sec)   p_kst 3.802281e-07   p_cons 1.907411e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 4.969764e-03	ci left: 1.902456e-01	ci right 1.911938e-01	k: 503499	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
NRAS   2640000 perm   3197 sec   (826 perm/sec)   p_kst 3.787879e-07   p_cons 1.907193e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 4.960677e-03	ci left: 1.902279e-01	ci right 1.911743e-01	k: 505357	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
NRAS   2650000 perm   3219 sec   (823 perm/sec)   p_kst 3.773585e-07   p_cons 1.907008e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 4.951741e-03	ci left: 1.902040e-01	ci right 1.911485e-01	k: 507198	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
NRAS   2660000 perm   3242 sec   (821 perm/sec)   p_kst 3.759398e-07   p_cons 1.906759e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 4.942422e-03	ci left: 1.902072e-01	ci right 1.911500e-01	k: 509111	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
NRAS   2670000 perm   3276 sec   (815 perm/sec)   p_kst 3.745318e-07   p_cons 1.906783e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 4.933549e-03	ci left: 1.901858e-01	ci right 1.911268e-01	k: 510958	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
NRAS   2680000 perm   3299 sec   (812 perm/sec)   p_kst 3.731343e-07   p_cons 1.906560e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 4.924623e-03	ci left: 1.901709e-01	ci right 1.911101e-01	k: 512822	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
NRAS   2690000 perm   3322 sec   (810 perm/sec)   p_kst 3.717472e-07   p_cons 1.906401e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 4.915875e-03	ci left: 1.901479e-01	ci right 1.910853e-01	k: 514664	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
NRAS   2700000 perm   3345 sec   (807 perm/sec)   p_kst 3.703704e-07   p_cons 1.906163e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 4.907032e-03	ci left: 1.901340e-01	ci right 1.910696e-01	k: 516530	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
NRAS   2710000 perm   3375 sec   (803 perm/sec)   p_kst 3.690037e-07   p_cons 1.906015e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 4.897992e-03	ci left: 1.901356e-01	ci right 1.910695e-01	k: 518438	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
NRAS   2720000 perm   3398 sec   (801 perm/sec)   p_kst 3.676471e-07   p_cons 1.906022e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 4.888990e-03	ci left: 1.901379e-01	ci right 1.910701e-01	k: 520348	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
NRAS   2730000 perm   3421 sec   (798 perm/sec)   p_kst 3.663004e-07   p_cons 1.906037e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 4.880246e-03	ci left: 1.901271e-01	ci right 1.910575e-01	k: 522222	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
NRAS   2740000 perm   3444 sec   (795 perm/sec)   p_kst 3.649635e-07   p_cons 1.905920e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 4.871364e-03	ci left: 1.901279e-01	ci right 1.910567e-01	k: 524128	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
NRAS   2750000 perm   3468 sec   (793 perm/sec)   p_kst 3.636364e-07   p_cons 1.905920e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 4.862439e-03	ci left: 1.901346e-01	ci right 1.910617e-01	k: 526050	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
NRAS   2760000 perm   3491 sec   (791 perm/sec)   p_kst 3.623188e-07   p_cons 1.905978e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 4.854268e-03	ci left: 1.900965e-01	ci right 1.910219e-01	k: 527848	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
NRAS   2770000 perm   3515 sec   (788 perm/sec)   p_kst 3.610108e-07   p_cons 1.905588e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 4.845645e-03	ci left: 1.900899e-01	ci right 1.910136e-01	k: 529733	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
NRAS   2780000 perm   3538 sec   (786 perm/sec)   p_kst 3.597122e-07   p_cons 1.905514e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 4.837305e-03	ci left: 1.900684e-01	ci right 1.909903e-01	k: 531576	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
NRAS   2790000 perm   3561 sec   (783 perm/sec)   p_kst 3.584229e-07   p_cons 1.905290e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 4.828750e-03	ci left: 1.900634e-01	ci right 1.909837e-01	k: 533465	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
NRAS   2800000 perm   3585 sec   (781 perm/sec)   p_kst 3.571429e-07   p_cons 1.905232e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 4.820686e-03	ci left: 1.900300e-01	ci right 1.909486e-01	k: 535274	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
NRAS   2810000 perm   3609 sec   (779 perm/sec)   p_kst 3.558719e-07   p_cons 1.904890e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 4.812141e-03	ci left: 1.900301e-01	ci right 1.909471e-01	k: 537177	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
NRAS   2820000 perm   3632 sec   (776 perm/sec)   p_kst 3.546099e-07   p_cons 1.904883e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 4.803714e-03	ci left: 1.900257e-01	ci right 1.909410e-01	k: 539067	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
NRAS   2830000 perm   3656 sec   (774 perm/sec)   p_kst 3.533569e-07   p_cons 1.904830e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 4.795248e-03	ci left: 1.900265e-01	ci right 1.909403e-01	k: 540972	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
NRAS   2840000 perm   3680 sec   (772 perm/sec)   p_kst 3.521127e-07   p_cons 1.904831e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 4.787040e-03	ci left: 1.900137e-01	ci right 1.909258e-01	k: 542838	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
NRAS   2850000 perm   3703 sec   (770 perm/sec)   p_kst 3.508772e-07   p_cons 1.904695e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 4.778461e-03	ci left: 1.900276e-01	ci right 1.909381e-01	k: 544780	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
NRAS   2860000 perm   3727 sec   (767 perm/sec)   p_kst 3.496503e-07   p_cons 1.904825e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 4.770279e-03	ci left: 1.900187e-01	ci right 1.909276e-01	k: 546657	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
NRAS   2870000 perm   3750 sec   (765 perm/sec)   p_kst 3.484321e-07   p_cons 1.904728e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 4.762048e-03	ci left: 1.900157e-01	ci right 1.909231e-01	k: 548551	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
NRAS   2880000 perm   3774 sec   (763 perm/sec)   p_kst 3.472222e-07   p_cons 1.904691e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 4.753827e-03	ci left: 1.900149e-01	ci right 1.909207e-01	k: 550451	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
NRAS   2890000 perm   3798 sec   (761 perm/sec)   p_kst 3.460208e-07   p_cons 1.904675e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 4.745696e-03	ci left: 1.900110e-01	ci right 1.909152e-01	k: 552342	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
NRAS   2900000 perm   3821 sec   (759 perm/sec)   p_kst 3.448276e-07   p_cons 1.904628e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 4.737575e-03	ci left: 1.900091e-01	ci right 1.909118e-01	k: 554239	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
NRAS   2910000 perm   3844 sec   (757 perm/sec)   p_kst 3.436426e-07   p_cons 1.904601e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 4.729538e-03	ci left: 1.900046e-01	ci right 1.909056e-01	k: 556128	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
NRAS   2920000 perm   3868 sec   (755 perm/sec)   p_kst 3.424658e-07   p_cons 1.904548e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 4.721672e-03	ci left: 1.899915e-01	ci right 1.908910e-01	k: 557992	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
NRAS   2930000 perm   3893 sec   (753 perm/sec)   p_kst 3.412969e-07   p_cons 1.904410e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 4.713315e-03	ci left: 1.900132e-01	ci right 1.909112e-01	k: 559958	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
NRAS   2940000 perm   3918 sec   (750 perm/sec)   p_kst 3.401361e-07   p_cons 1.904619e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 4.705395e-03	ci left: 1.900090e-01	ci right 1.909055e-01	k: 561848	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
NRAS   2950000 perm   3943 sec   (748 perm/sec)   p_kst 3.389831e-07   p_cons 1.904569e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 4.697793e-03	ci left: 1.899866e-01	ci right 1.908816e-01	k: 563684	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
NRAS   2960000 perm   3968 sec   (746 perm/sec)   p_kst 3.378378e-07   p_cons 1.904338e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 4.689818e-03	ci left: 1.899913e-01	ci right 1.908847e-01	k: 565600	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
NRAS   2970000 perm   3994 sec   (744 perm/sec)   p_kst 3.367003e-07   p_cons 1.904377e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 4.681787e-03	ci left: 1.900023e-01	ci right 1.908943e-01	k: 567535	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
NRAS   2980000 perm   4019 sec   (741 perm/sec)   p_kst 3.355705e-07   p_cons 1.904480e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 4.674349e-03	ci left: 1.899768e-01	ci right 1.908672e-01	k: 569361	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
NRAS   2990000 perm   4044 sec   (739 perm/sec)   p_kst 3.344482e-07   p_cons 1.904217e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 4.666644e-03	ci left: 1.899715e-01	ci right 1.908604e-01	k: 571247	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
NRAS   3000000 perm   4070 sec   (737 perm/sec)   p_kst 3.333333e-07   p_cons 1.904157e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 4.658816e-03	ci left: 1.899768e-01	ci right 1.908643e-01	k: 573165	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
NRAS   3010000 perm   4095 sec   (735 perm/sec)   p_kst 3.322259e-07   p_cons 1.904203e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 4.651402e-03	ci left: 1.899573e-01	ci right 1.908433e-01	k: 575008	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
NRAS   3020000 perm   4121 sec   (733 perm/sec)   p_kst 3.311258e-07   p_cons 1.904000e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 4.643964e-03	ci left: 1.899419e-01	ci right 1.908263e-01	k: 576863	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
NRAS   3030000 perm   4146 sec   (731 perm/sec)   p_kst 3.300330e-07   p_cons 1.903838e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 4.636556e-03	ci left: 1.899269e-01	ci right 1.908099e-01	k: 578719	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
NRAS   3040000 perm   4172 sec   (729 perm/sec)   p_kst 3.289474e-07   p_cons 1.903681e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 4.629056e-03	ci left: 1.899205e-01	ci right 1.908020e-01	k: 580601	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
NRAS   3050000 perm   4198 sec   (727 perm/sec)   p_kst 3.278689e-07   p_cons 1.903610e-01   p_joint 0

Joint ci ratio: 1.306665e+00	ci left: 1.128704e-06	ci right 5.151362e-06	k: 8	n:3060000
Cons ci ratio: 4.621508e-03	ci left: 1.899197e-01	ci right 1.907998e-01	k: 582500	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
NRAS   3060000 perm   4223 sec   (725 perm/sec)   p_kst 6.535948e-07   p_cons 1.903595e-01   p_joint 2.614379e-06

Joint ci ratio: 1.306665e+00	ci left: 1.125027e-06	ci right 5.134583e-06	k: 8	n:3070000
Cons ci ratio: 4.614388e-03	ci left: 1.898929e-01	ci right 1.907715e-01	k: 584319	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
NRAS   3070000 perm   4249 sec   (722 perm/sec)   p_kst 6.514658e-07   p_cons 1.903319e-01   p_joint 2.605863e-06

Joint ci ratio: 1.306665e+00	ci left: 1.121375e-06	ci right 5.117912e-06	k: 8	n:3080000
Cons ci ratio: 4.606596e-03	ci left: 1.899133e-01	ci right 1.907905e-01	k: 586283	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
NRAS   3080000 perm   4275 sec   (720 perm/sec)   p_kst 6.493506e-07   p_cons 1.903516e-01   p_joint 2.597403e-06

Joint ci ratio: 1.306665e+00	ci left: 1.117746e-06	ci right 5.101349e-06	k: 8	n:3090000
Cons ci ratio: 4.599114e-03	ci left: 1.899155e-01	ci right 1.907912e-01	k: 588191	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
NRAS   3090000 perm   4302 sec   (718 perm/sec)   p_kst 6.472492e-07   p_cons 1.903531e-01   p_joint 2.588997e-06

Joint ci ratio: 1.306665e+00	ci left: 1.114140e-06	ci right 5.084893e-06	k: 8	n:3100000
Cons ci ratio: 4.591530e-03	ci left: 1.899270e-01	ci right 1.908013e-01	k: 590128	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
NRAS   3100000 perm   4328 sec   (716 perm/sec)   p_kst 6.451613e-07   p_cons 1.903639e-01   p_joint 2.580645e-06

Joint ci ratio: 1.306665e+00	ci left: 1.110558e-06	ci right 5.068543e-06	k: 8	n:3110000
Cons ci ratio: 4.584370e-03	ci left: 1.899124e-01	ci right 1.907853e-01	k: 591984	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
NRAS   3110000 perm   4355 sec   (714 perm/sec)   p_kst 6.430868e-07   p_cons 1.903486e-01   p_joint 2.572347e-06

Joint ci ratio: 1.306665e+00	ci left: 1.106998e-06	ci right 5.052298e-06	k: 8	n:3120000
Cons ci ratio: 4.577196e-03	ci left: 1.899011e-01	ci right 1.907726e-01	k: 593850	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
NRAS   3120000 perm   4396 sec   (710 perm/sec)   p_kst 6.410256e-07   p_cons 1.903365e-01   p_joint 2.564103e-06

Joint ci ratio: 1.306665e+00	ci left: 1.103461e-06	ci right 5.036156e-06	k: 8	n:3130000
Cons ci ratio: 4.569870e-03	ci left: 1.899023e-01	ci right 1.907724e-01	k: 595755	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
NRAS   3130000 perm   4423 sec   (708 perm/sec)   p_kst 6.389776e-07   p_cons 1.903371e-01   p_joint 2.555911e-06

Joint ci ratio: 1.306665e+00	ci left: 1.099947e-06	ci right 5.020118e-06	k: 8	n:3140000
Cons ci ratio: 4.562566e-03	ci left: 1.899045e-01	ci right 1.907732e-01	k: 597663	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
NRAS   3140000 perm   4461 sec   (704 perm/sec)   p_kst 6.369427e-07   p_cons 1.903385e-01   p_joint 2.547771e-06

Joint ci ratio: 1.306665e+00	ci left: 1.096455e-06	ci right 5.004181e-06	k: 8	n:3150000
Cons ci ratio: 4.555521e-03	ci left: 1.898914e-01	ci right 1.907587e-01	k: 599523	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
NRAS   3150000 perm   4487 sec   (702 perm/sec)   p_kst 6.349206e-07   p_cons 1.903248e-01   p_joint 2.539683e-06

Joint ci ratio: 1.306665e+00	ci left: 1.092985e-06	ci right 4.988345e-06	k: 8	n:3160000
Cons ci ratio: 4.548243e-03	ci left: 1.898964e-01	ci right 1.907624e-01	k: 601440	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
NRAS   3160000 perm   4514 sec   (700 perm/sec)   p_kst 6.329114e-07   p_cons 1.903291e-01   p_joint 2.531646e-06

Joint ci ratio: 1.753076e+00	ci left: 3.438062e-07	ci right 3.230782e-06	k: 4	n:3170000
Cons ci ratio: 4.541033e-03	ci left: 1.898992e-01	ci right 1.907638e-01	k: 603350	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
NRAS   3170000 perm   4540 sec   (698 perm/sec)   p_kst 6.309148e-07   p_cons 1.903312e-01   p_joint 1.261830e-06

Joint ci ratio: 1.753076e+00	ci left: 3.427251e-07	ci right 3.220622e-06	k: 4	n:3180000
Cons ci ratio: 4.533958e-03	ci left: 1.898951e-01	ci right 1.907583e-01	k: 605238	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
NRAS   3180000 perm   4567 sec   (696 perm/sec)   p_kst 6.289308e-07   p_cons 1.903264e-01   p_joint 1.257862e-06

Joint ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
Cons ci ratio: 4.526875e-03	ci left: 1.898938e-01	ci right 1.907557e-01	k: 607135	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
NRAS   3190000 perm   4594 sec   (694 perm/sec)   p_kst 6.269592e-07   p_cons 1.903245e-01   p_joint 1.253918e-06

Joint ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
Cons ci ratio: 4.520063e-03	ci left: 1.898763e-01	ci right 1.907368e-01	k: 608980	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
NRAS   3200000 perm   4620 sec   (693 perm/sec)   p_kst 6.250000e-07   p_cons 1.903063e-01   p_joint 1.250000e-06

Joint ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
Cons ci ratio: 4.512939e-03	ci left: 1.898822e-01	ci right 1.907414e-01	k: 610900	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
NRAS   3210000 perm   4646 sec   (691 perm/sec)   p_kst 6.230530e-07   p_cons 1.903115e-01   p_joint 1.246106e-06

Joint ci ratio: 1.753076e+00	ci left: 3.384676e-07	ci right 3.180615e-06	k: 4	n:3220000
Cons ci ratio: 4.505686e-03	ci left: 1.898993e-01	ci right 1.907572e-01	k: 612856	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
NRAS   3220000 perm   4672 sec   (689 perm/sec)   p_kst 6.211180e-07   p_cons 1.903280e-01   p_joint 1.242236e-06

Joint ci ratio: 1.753076e+00	ci left: 3.374197e-07	ci right 3.170767e-06	k: 4	n:3230000
Cons ci ratio: 4.499141e-03	ci left: 1.898702e-01	ci right 1.907267e-01	k: 614663	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
NRAS   3230000 perm   4699 sec   (687 perm/sec)   p_kst 6.191950e-07   p_cons 1.902981e-01   p_joint 1.238390e-06

Joint ci ratio: 1.753076e+00	ci left: 3.363783e-07	ci right 3.160981e-06	k: 4	n:3240000
Cons ci ratio: 4.492278e-03	ci left: 1.898650e-01	ci right 1.907201e-01	k: 616547	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
NRAS   3240000 perm   4725 sec   (686 perm/sec)   p_kst 6.172840e-07   p_cons 1.902923e-01   p_joint 1.234568e-06

Joint ci ratio: 1.753076e+00	ci left: 3.353433e-07	ci right 3.151255e-06	k: 4	n:3250000
Cons ci ratio: 4.485218e-03	ci left: 1.898755e-01	ci right 1.907293e-01	k: 618482	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
NRAS   3250000 perm   4752 sec   (684 perm/sec)   p_kst 6.153846e-07   p_cons 1.903022e-01   p_joint 1.230769e-06

Joint ci ratio: 1.753076e+00	ci left: 3.343146e-07	ci right 3.141589e-06	k: 4	n:3260000
Cons ci ratio: 4.478173e-03	ci left: 1.898872e-01	ci right 1.907397e-01	k: 620421	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
NRAS   3260000 perm   4779 sec   (682 perm/sec)   p_kst 6.134969e-07   p_cons 1.903132e-01   p_joint 1.226994e-06

Joint ci ratio: 1.753076e+00	ci left: 3.332923e-07	ci right 3.131981e-06	k: 4	n:3270000
Cons ci ratio: 4.471184e-03	ci left: 1.898973e-01	ci right 1.907485e-01	k: 622355	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
NRAS   3270000 perm   4805 sec   (680 perm/sec)   p_kst 6.116208e-07   p_cons 1.903226e-01   p_joint 1.223242e-06

Joint ci ratio: 1.753076e+00	ci left: 3.322761e-07	ci right 3.122433e-06	k: 4	n:3280000
Cons ci ratio: 4.464558e-03	ci left: 1.898845e-01	ci right 1.907344e-01	k: 624214	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
NRAS   3280000 perm   4832 sec   (679 perm/sec)   p_kst 6.097561e-07   p_cons 1.903091e-01   p_joint 1.219512e-06

Joint ci ratio: 1.753076e+00	ci left: 3.312662e-07	ci right 3.112942e-06	k: 4	n:3290000
Cons ci ratio: 4.457592e-03	ci left: 1.898972e-01	ci right 1.907459e-01	k: 626157	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
NRAS   3290000 perm   4858 sec   (677 perm/sec)   p_kst 6.079027e-07   p_cons 1.903213e-01   p_joint 1.215805e-06

Joint ci ratio: 1.753076e+00	ci left: 3.302623e-07	ci right 3.103509e-06	k: 4	n:3300000
Cons ci ratio: 4.450195e-03	ci left: 1.899420e-01	ci right 1.907895e-01	k: 628206	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
NRAS   3300000 perm   4885 sec   (675 perm/sec)   p_kst 6.060606e-07   p_cons 1.903655e-01   p_joint 1.212121e-06

Joint ci ratio: 1.753076e+00	ci left: 3.292646e-07	ci right 3.094133e-06	k: 4	n:3310000
Cons ci ratio: 4.443401e-03	ci left: 1.899473e-01	ci right 1.907935e-01	k: 630125	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
NRAS   3310000 perm   4912 sec   (674 perm/sec)   p_kst 6.042296e-07   p_cons 1.903701e-01   p_joint 1.208459e-06

Joint ci ratio: 1.753076e+00	ci left: 3.282728e-07	ci right 3.084813e-06	k: 4	n:3320000
Cons ci ratio: 4.436447e-03	ci left: 1.899658e-01	ci right 1.908107e-01	k: 632088	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
NRAS   3320000 perm   4937 sec   (672 perm/sec)   p_kst 6.024096e-07   p_cons 1.903880e-01   p_joint 1.204819e-06

Joint ci ratio: 1.753076e+00	ci left: 3.272870e-07	ci right 3.075549e-06	k: 4	n:3330000
Cons ci ratio: 4.429772e-03	ci left: 1.899670e-01	ci right 1.908107e-01	k: 633994	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
NRAS   3330000 perm   4963 sec   (671 perm/sec)   p_kst 6.006006e-07   p_cons 1.903886e-01   p_joint 1.201201e-06

Joint ci ratio: 1.753076e+00	ci left: 3.263071e-07	ci right 3.066341e-06	k: 4	n:3340000
Cons ci ratio: 4.423006e-03	ci left: 1.899767e-01	ci right 1.908191e-01	k: 635928	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
NRAS   3340000 perm   4990 sec   (669 perm/sec)   p_kst 5.988024e-07   p_cons 1.903976e-01   p_joint 1.197605e-06

Joint ci ratio: 1.753076e+00	ci left: 3.253330e-07	ci right 3.057188e-06	k: 4	n:3350000
Cons ci ratio: 4.416656e-03	ci left: 1.899594e-01	ci right 1.908005e-01	k: 637772	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
NRAS   3350000 perm   5018 sec   (668 perm/sec)   p_kst 5.970149e-07   p_cons 1.903797e-01   p_joint 1.194030e-06

Joint ci ratio: 1.753076e+00	ci left: 3.243648e-07	ci right 3.048089e-06	k: 4	n:3360000
Cons ci ratio: 4.410559e-03	ci left: 1.899265e-01	ci right 1.907663e-01	k: 639563	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
NRAS   3360000 perm   5046 sec   (666 perm/sec)   p_kst 5.952381e-07   p_cons 1.903461e-01   p_joint 1.190476e-06

Joint ci ratio: 1.753076e+00	ci left: 3.234023e-07	ci right 3.039044e-06	k: 4	n:3370000
Cons ci ratio: 4.404114e-03	ci left: 1.899199e-01	ci right 1.907584e-01	k: 641442	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
NRAS   3370000 perm   5075 sec   (664 perm/sec)   p_kst 5.934718e-07   p_cons 1.903389e-01   p_joint 1.186944e-06

Joint ci ratio: 1.753076e+00	ci left: 3.224455e-07	ci right 3.030053e-06	k: 4	n:3380000
Cons ci ratio: 4.397731e-03	ci left: 1.899109e-01	ci right 1.907482e-01	k: 643313	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
NRAS   3380000 perm   5103 sec   (662 perm/sec)   p_kst 5.917160e-07   p_cons 1.903293e-01   p_joint 1.183432e-06

Joint ci ratio: 1.753076e+00	ci left: 3.214943e-07	ci right 3.021115e-06	k: 4	n:3390000
Cons ci ratio: 4.391107e-03	ci left: 1.899209e-01	ci right 1.907569e-01	k: 645248	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
NRAS   3390000 perm   5132 sec   (661 perm/sec)   p_kst 5.899705e-07   p_cons 1.903386e-01   p_joint 1.179941e-06

Joint ci ratio: 1.753076e+00	ci left: 3.205487e-07	ci right 3.012229e-06	k: 4	n:3400000
Cons ci ratio: 4.384726e-03	ci left: 1.899158e-01	ci right 1.907506e-01	k: 647132	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
NRAS   3400000 perm   5161 sec   (659 perm/sec)   p_kst 5.882353e-07   p_cons 1.903329e-01   p_joint 1.176471e-06

Joint ci ratio: 1.753076e+00	ci left: 3.196087e-07	ci right 3.003396e-06	k: 4	n:3410000
Cons ci ratio: 4.378322e-03	ci left: 1.899143e-01	ci right 1.907479e-01	k: 649028	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
NRAS   3410000 perm   5190 sec   (657 perm/sec)   p_kst 5.865103e-07   p_cons 1.903308e-01   p_joint 1.173021e-06

Joint ci ratio: 1.753076e+00	ci left: 3.186742e-07	ci right 2.994614e-06	k: 4	n:3420000
Cons ci ratio: 4.372059e-03	ci left: 1.899048e-01	ci right 1.907372e-01	k: 650897	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
NRAS   3420000 perm   5231 sec   (654 perm/sec)   p_kst 5.847953e-07   p_cons 1.903208e-01   p_joint 1.169591e-06

Joint ci ratio: 1.753076e+00	ci left: 3.177451e-07	ci right 2.985883e-06	k: 4	n:3430000
Cons ci ratio: 4.365901e-03	ci left: 1.898899e-01	ci right 1.907211e-01	k: 652747	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
NRAS   3430000 perm   5288 sec   (649 perm/sec)   p_kst 5.830904e-07   p_cons 1.903052e-01   p_joint 1.166181e-06

Joint ci ratio: 1.753076e+00	ci left: 3.168214e-07	ci right 2.977203e-06	k: 4	n:3440000
Cons ci ratio: 4.359443e-03	ci left: 1.898981e-01	ci right 1.907280e-01	k: 654676	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
NRAS   3440000 perm   5332 sec   (645 perm/sec)   p_kst 5.813953e-07   p_cons 1.903128e-01   p_joint 1.162791e-06

Joint ci ratio: 1.753076e+00	ci left: 3.159031e-07	ci right 2.968574e-06	k: 4	n:3450000
Cons ci ratio: 4.353269e-03	ci left: 1.898882e-01	ci right 1.907169e-01	k: 656543	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
NRAS   3450000 perm   5361 sec   (644 perm/sec)   p_kst 5.797101e-07   p_cons 1.903023e-01   p_joint 1.159420e-06

Joint ci ratio: 1.753076e+00	ci left: 3.149901e-07	ci right 2.959994e-06	k: 4	n:3460000
Cons ci ratio: 4.347104e-03	ci left: 1.898796e-01	ci right 1.907071e-01	k: 658414	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
NRAS   3460000 perm   5390 sec   (642 perm/sec)   p_kst 5.780347e-07   p_cons 1.902931e-01   p_joint 1.156069e-06

Joint ci ratio: 1.753076e+00	ci left: 3.140823e-07	ci right 2.951464e-06	k: 4	n:3470000
Cons ci ratio: 4.340864e-03	ci left: 1.898782e-01	ci right 1.907045e-01	k: 660310	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
NRAS   3470000 perm   5451 sec   (637 perm/sec)   p_kst 5.763689e-07   p_cons 1.902911e-01   p_joint 1.152738e-06

Joint ci ratio: 1.753076e+00	ci left: 3.131798e-07	ci right 2.942983e-06	k: 4	n:3480000
Cons ci ratio: 4.334747e-03	ci left: 1.898699e-01	ci right 1.906950e-01	k: 662182	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
NRAS   3480000 perm   5505 sec   (632 perm/sec)   p_kst 5.747126e-07   p_cons 1.902822e-01   p_joint 1.149425e-06

Joint ci ratio: 1.753076e+00	ci left: 3.122824e-07	ci right 2.934550e-06	k: 4	n:3490000
Cons ci ratio: 4.328600e-03	ci left: 1.898657e-01	ci right 1.906896e-01	k: 664068	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
NRAS   3490000 perm   5534 sec   (631 perm/sec)   p_kst 5.730659e-07   p_cons 1.902774e-01   p_joint 1.146132e-06

Joint ci ratio: 1.753076e+00	ci left: 3.113902e-07	ci right 2.926166e-06	k: 4	n:3500000
Cons ci ratio: 4.322443e-03	ci left: 1.898640e-01	ci right 1.906868e-01	k: 665963	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
NRAS   3500000 perm   5564 sec   (629 perm/sec)   p_kst 5.714286e-07   p_cons 1.902751e-01   p_joint 1.142857e-06

Joint ci ratio: 1.753076e+00	ci left: 3.105030e-07	ci right 2.917829e-06	k: 4	n:3510000
Cons ci ratio: 4.316616e-03	ci left: 1.898408e-01	ci right 1.906623e-01	k: 667782	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
NRAS   3510000 perm   5594 sec   (627 perm/sec)   p_kst 5.698006e-07   p_cons 1.902513e-01   p_joint 1.139601e-06

Joint ci ratio: 1.753076e+00	ci left: 3.096209e-07	ci right 2.909540e-06	k: 4	n:3520000
Cons ci ratio: 4.310490e-03	ci left: 1.898407e-01	ci right 1.906610e-01	k: 669682	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
NRAS   3520000 perm   5624 sec   (626 perm/sec)   p_kst 5.681818e-07   p_cons 1.902506e-01   p_joint 1.136364e-06

Joint ci ratio: 1.753076e+00	ci left: 3.087438e-07	ci right 2.901297e-06	k: 4	n:3530000
Cons ci ratio: 4.304394e-03	ci left: 1.898402e-01	ci right 1.906594e-01	k: 671581	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
NRAS   3530000 perm   5654 sec   (624 perm/sec)   p_kst 5.665722e-07   p_cons 1.902496e-01   p_joint 1.133144e-06

Joint ci ratio: 1.753076e+00	ci left: 3.078717e-07	ci right 2.893102e-06	k: 4	n:3540000
Cons ci ratio: 4.298375e-03	ci left: 1.898362e-01	ci right 1.906542e-01	k: 673467	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
NRAS   3540000 perm   5683 sec   (623 perm/sec)   p_kst 5.649718e-07   p_cons 1.902449e-01   p_joint 1.129944e-06

Joint ci ratio: 1.753076e+00	ci left: 3.070044e-07	ci right 2.884952e-06	k: 4	n:3550000
Cons ci ratio: 4.292413e-03	ci left: 1.898299e-01	ci right 1.906467e-01	k: 675345	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
NRAS   3550000 perm   5712 sec   (621 perm/sec)   p_kst 5.633803e-07   p_cons 1.902380e-01   p_joint 1.126761e-06

Joint ci ratio: 1.753076e+00	ci left: 3.061420e-07	ci right 2.876848e-06	k: 4	n:3560000
Cons ci ratio: 4.286409e-03	ci left: 1.898284e-01	ci right 1.906441e-01	k: 677240	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
NRAS   3560000 perm   5742 sec   (620 perm/sec)   p_kst 5.617978e-07   p_cons 1.902360e-01   p_joint 1.123596e-06

Joint ci ratio: 1.753076e+00	ci left: 3.052845e-07	ci right 2.868790e-06	k: 4	n:3570000
Cons ci ratio: 4.280227e-03	ci left: 1.898414e-01	ci right 1.906560e-01	k: 679187	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
NRAS   3570000 perm   5772 sec   (618 perm/sec)   p_kst 5.602241e-07   p_cons 1.902485e-01   p_joint 1.120448e-06

Joint ci ratio: 1.753076e+00	ci left: 3.044317e-07	ci right 2.860776e-06	k: 4	n:3580000
Cons ci ratio: 4.274096e-03	ci left: 1.898527e-01	ci right 1.906662e-01	k: 681128	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
NRAS   3580000 perm   5802 sec   (617 perm/sec)   p_kst 5.586592e-07   p_cons 1.902592e-01   p_joint 1.117318e-06

Joint ci ratio: 1.753076e+00	ci left: 3.035838e-07	ci right 2.852808e-06	k: 4	n:3590000
Cons ci ratio: 4.267941e-03	ci left: 1.898676e-01	ci right 1.906800e-01	k: 683082	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
NRAS   3590000 perm   5832 sec   (616 perm/sec)   p_kst 5.571031e-07   p_cons 1.902735e-01   p_joint 1.114206e-06

Joint ci ratio: 1.753076e+00	ci left: 3.027405e-07	ci right 2.844883e-06	k: 4	n:3600000
Cons ci ratio: 4.261716e-03	ci left: 1.898893e-01	ci right 1.907006e-01	k: 685061	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
NRAS   3600000 perm   5862 sec   (614 perm/sec)   p_kst 5.555556e-07   p_cons 1.902947e-01   p_joint 1.111111e-06

Joint ci ratio: 1.753076e+00	ci left: 3.019018e-07	ci right 2.837003e-06	k: 4	n:3610000
Cons ci ratio: 4.255870e-03	ci left: 1.898855e-01	ci right 1.906956e-01	k: 686948	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
NRAS   3610000 perm   5891 sec   (613 perm/sec)   p_kst 5.540166e-07   p_cons 1.902903e-01   p_joint 1.108033e-06

Joint ci ratio: 1.753076e+00	ci left: 3.010679e-07	ci right 2.829166e-06	k: 4	n:3620000
Cons ci ratio: 4.249774e-03	ci left: 1.899015e-01	ci right 1.907106e-01	k: 688907	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
NRAS   3620000 perm   5920 sec   (611 perm/sec)   p_kst 5.524862e-07   p_cons 1.903058e-01   p_joint 1.104972e-06

Joint ci ratio: 1.753076e+00	ci left: 3.002385e-07	ci right 2.821372e-06	k: 4	n:3630000
Cons ci ratio: 4.243788e-03	ci left: 1.899114e-01	ci right 1.907194e-01	k: 690844	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
NRAS   3630000 perm   5949 sec   (610 perm/sec)   p_kst 5.509642e-07   p_cons 1.903152e-01   p_joint 1.101928e-06

Joint ci ratio: 1.753076e+00	ci left: 2.994136e-07	ci right 2.813621e-06	k: 4	n:3640000
Cons ci ratio: 4.237910e-03	ci left: 1.899152e-01	ci right 1.907221e-01	k: 692759	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
NRAS   3640000 perm   5979 sec   (609 perm/sec)   p_kst 5.494505e-07   p_cons 1.903184e-01   p_joint 1.098901e-06

Joint ci ratio: 1.753076e+00	ci left: 2.985933e-07	ci right 2.805912e-06	k: 4	n:3650000
Cons ci ratio: 4.232154e-03	ci left: 1.899119e-01	ci right 1.907176e-01	k: 694648	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
NRAS   3650000 perm   6009 sec   (607 perm/sec)   p_kst 5.479452e-07   p_cons 1.903145e-01   p_joint 1.095890e-06

Joint ci ratio: 1.753076e+00	ci left: 2.977775e-07	ci right 2.798246e-06	k: 4	n:3660000
Cons ci ratio: 4.226327e-03	ci left: 1.899154e-01	ci right 1.907200e-01	k: 696562	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
NRAS   3660000 perm   6038 sec   (606 perm/sec)   p_kst 5.464481e-07   p_cons 1.903175e-01   p_joint 1.092896e-06

Joint ci ratio: 1.753076e+00	ci left: 2.969661e-07	ci right 2.790621e-06	k: 4	n:3670000
Cons ci ratio: 4.220768e-03	ci left: 1.899012e-01	ci right 1.907047e-01	k: 698411	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
NRAS   3670000 perm   6067 sec   (605 perm/sec)   p_kst 5.449591e-07   p_cons 1.903027e-01   p_joint 1.089918e-06

Joint ci ratio: 1.753076e+00	ci left: 2.961591e-07	ci right 2.783038e-06	k: 4	n:3680000
Cons ci ratio: 4.214936e-03	ci left: 1.899086e-01	ci right 1.907110e-01	k: 700339	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
NRAS   3680000 perm   6096 sec   (604 perm/sec)   p_kst 5.434783e-07   p_cons 1.903095e-01   p_joint 1.086957e-06

Joint ci ratio: 1.753076e+00	ci left: 2.953565e-07	ci right 2.775496e-06	k: 4	n:3690000
Cons ci ratio: 4.209188e-03	ci left: 1.899115e-01	ci right 1.907128e-01	k: 702251	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
NRAS   3690000 perm   6125 sec   (602 perm/sec)   p_kst 5.420054e-07   p_cons 1.903119e-01   p_joint 1.084011e-06

Joint ci ratio: 1.753076e+00	ci left: 2.945583e-07	ci right 2.767995e-06	k: 4	n:3700000
Cons ci ratio: 4.203452e-03	ci left: 1.899153e-01	ci right 1.907155e-01	k: 704166	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
NRAS   3700000 perm   6156 sec   (601 perm/sec)   p_kst 5.405405e-07   p_cons 1.903151e-01   p_joint 1.081081e-06

Joint ci ratio: 1.753076e+00	ci left: 2.937643e-07	ci right 2.760534e-06	k: 4	n:3710000
Cons ci ratio: 4.197806e-03	ci left: 1.899141e-01	ci right 1.907133e-01	k: 706063	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
NRAS   3710000 perm   6187 sec   (600 perm/sec)   p_kst 5.390836e-07   p_cons 1.903135e-01   p_joint 1.078167e-06

Joint ci ratio: 1.753076e+00	ci left: 2.929746e-07	ci right 2.753113e-06	k: 4	n:3720000
Cons ci ratio: 4.192128e-03	ci left: 1.899171e-01	ci right 1.907151e-01	k: 707975	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
NRAS   3720000 perm   6235 sec   (597 perm/sec)   p_kst 5.376344e-07   p_cons 1.903159e-01   p_joint 1.075269e-06

Joint ci ratio: 1.753076e+00	ci left: 2.921892e-07	ci right 2.745732e-06	k: 4	n:3730000
Cons ci ratio: 4.186509e-03	ci left: 1.899173e-01	ci right 1.907143e-01	k: 709877	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
NRAS   3730000 perm   6289 sec   (593 perm/sec)   p_kst 5.361930e-07   p_cons 1.903155e-01   p_joint 1.072386e-06

Joint ci ratio: 1.753076e+00	ci left: 2.914079e-07	ci right 2.738390e-06	k: 4	n:3740000
Cons ci ratio: 4.181068e-03	ci left: 1.899060e-01	ci right 1.907019e-01	k: 711736	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
NRAS   3740000 perm   6320 sec   (592 perm/sec)   p_kst 5.347594e-07   p_cons 1.903037e-01   p_joint 1.069519e-06

Joint ci ratio: 1.753076e+00	ci left: 2.906308e-07	ci right 2.731088e-06	k: 4	n:3750000
Cons ci ratio: 4.175508e-03	ci left: 1.899052e-01	ci right 1.907001e-01	k: 713634	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
NRAS   3750000 perm   6382 sec   (588 perm/sec)   p_kst 5.333333e-07   p_cons 1.903024e-01   p_joint 1.066667e-06

Joint ci ratio: 1.753076e+00	ci left: 2.898579e-07	ci right 2.723825e-06	k: 4	n:3760000
Cons ci ratio: 4.170225e-03	ci left: 1.898855e-01	ci right 1.906793e-01	k: 715461	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
NRAS   3760000 perm   6445 sec   (583 perm/sec)   p_kst 5.319149e-07   p_cons 1.902822e-01   p_joint 1.063830e-06

Joint ci ratio: 1.753076e+00	ci left: 2.890890e-07	ci right 2.716600e-06	k: 4	n:3770000
Cons ci ratio: 4.164583e-03	ci left: 1.898941e-01	ci right 1.906868e-01	k: 717394	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
NRAS   3770000 perm   6508 sec   (579 perm/sec)   p_kst 5.305040e-07   p_cons 1.902902e-01   p_joint 1.061008e-06

Joint ci ratio: 1.753076e+00	ci left: 2.883242e-07	ci right 2.709413e-06	k: 4	n:3780000
Cons ci ratio: 4.159034e-03	ci left: 1.898973e-01	ci right 1.906889e-01	k: 719307	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
NRAS   3780000 perm   6559 sec   (576 perm/sec)   p_kst 5.291005e-07   p_cons 1.902929e-01   p_joint 1.058201e-06

Joint ci ratio: 1.753076e+00	ci left: 2.875635e-07	ci right 2.702264e-06	k: 4	n:3790000
Cons ci ratio: 4.153640e-03	ci left: 1.898907e-01	ci right 1.906813e-01	k: 721183	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
NRAS   3790000 perm   6591 sec   (575 perm/sec)   p_kst 5.277045e-07   p_cons 1.902858e-01   p_joint 1.055409e-06

Joint ci ratio: 1.753076e+00	ci left: 2.868068e-07	ci right 2.695153e-06	k: 4	n:3800000
Cons ci ratio: 4.148131e-03	ci left: 1.898941e-01	ci right 1.906837e-01	k: 723097	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
NRAS   3800000 perm   6622 sec   (574 perm/sec)   p_kst 5.263158e-07   p_cons 1.902887e-01   p_joint 1.052632e-06

Joint ci ratio: 1.753076e+00	ci left: 2.860540e-07	ci right 2.688079e-06	k: 4	n:3810000
Cons ci ratio: 4.142676e-03	ci left: 1.898952e-01	ci right 1.906838e-01	k: 725002	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
NRAS   3810000 perm   6653 sec   (573 perm/sec)   p_kst 5.249344e-07   p_cons 1.902892e-01   p_joint 1.049869e-06

Joint ci ratio: 1.753076e+00	ci left: 2.853051e-07	ci right 2.681042e-06	k: 4	n:3820000
Cons ci ratio: 4.137426e-03	ci left: 1.898827e-01	ci right 1.906702e-01	k: 726855	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
NRAS   3820000 perm   6685 sec   (571 perm/sec)   p_kst 5.235602e-07   p_cons 1.902762e-01   p_joint 1.047120e-06

Joint ci ratio: 1.753076e+00	ci left: 2.845602e-07	ci right 2.674042e-06	k: 4	n:3830000
Cons ci ratio: 4.132083e-03	ci left: 1.898785e-01	ci right 1.906650e-01	k: 728740	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
NRAS   3830000 perm   6716 sec   (570 perm/sec)   p_kst 5.221932e-07   p_cons 1.902715e-01   p_joint 1.044386e-06

Joint ci ratio: 1.753076e+00	ci left: 2.838192e-07	ci right 2.667078e-06	k: 4	n:3840000
Cons ci ratio: 4.126552e-03	ci left: 1.898901e-01	ci right 1.906755e-01	k: 730685	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
NRAS   3840000 perm   6747 sec   (569 perm/sec)   p_kst 5.208333e-07   p_cons 1.902826e-01   p_joint 1.041667e-06

Joint ci ratio: 1.753076e+00	ci left: 2.830820e-07	ci right 2.660151e-06	k: 4	n:3850000
Cons ci ratio: 4.121286e-03	ci left: 1.898833e-01	ci right 1.906678e-01	k: 732560	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
NRAS   3850000 perm   6779 sec   (568 perm/sec)   p_kst 5.194805e-07   p_cons 1.902753e-01   p_joint 1.038961e-06

Joint ci ratio: 1.753076e+00	ci left: 2.823486e-07	ci right 2.653259e-06	k: 4	n:3860000
Cons ci ratio: 4.115999e-03	ci left: 1.898798e-01	ci right 1.906632e-01	k: 734447	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
NRAS   3860000 perm   6811 sec   (567 perm/sec)   p_kst 5.181347e-07   p_cons 1.902712e-01   p_joint 1.036269e-06

Joint ci ratio: 1.753076e+00	ci left: 2.816190e-07	ci right 2.646403e-06	k: 4	n:3870000
Cons ci ratio: 4.110549e-03	ci left: 1.898899e-01	ci right 1.906723e-01	k: 736387	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
NRAS   3870000 perm   6843 sec   (566 perm/sec)   p_kst 5.167959e-07   p_cons 1.902809e-01   p_joint 1.033592e-06

Joint ci ratio: 1.753076e+00	ci left: 2.808932e-07	ci right 2.639583e-06	k: 4	n:3880000
Cons ci ratio: 4.105299e-03	ci left: 1.898866e-01	ci right 1.906680e-01	k: 738275	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
NRAS   3880000 perm   6875 sec   (564 perm/sec)   p_kst 5.154639e-07   p_cons 1.902771e-01   p_joint 1.030928e-06

Joint ci ratio: 1.753076e+00	ci left: 2.801711e-07	ci right 2.632797e-06	k: 4	n:3890000
Cons ci ratio: 4.099991e-03	ci left: 1.898892e-01	ci right 1.906696e-01	k: 740186	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
NRAS   3890000 perm   6907 sec   (563 perm/sec)   p_kst 5.141388e-07   p_cons 1.902792e-01   p_joint 1.028278e-06

Joint ci ratio: 1.753076e+00	ci left: 2.794527e-07	ci right 2.626046e-06	k: 4	n:3900000
Cons ci ratio: 4.094686e-03	ci left: 1.898931e-01	ci right 1.906725e-01	k: 742102	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
NRAS   3900000 perm   6939 sec   (562 perm/sec)   p_kst 5.128205e-07   p_cons 1.902826e-01   p_joint 1.025641e-06

Joint ci ratio: 1.753076e+00	ci left: 2.787380e-07	ci right 2.619330e-06	k: 4	n:3910000
Cons ci ratio: 4.089487e-03	ci left: 1.898906e-01	ci right 1.906690e-01	k: 743993	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
NRAS   3910000 perm   6971 sec   (561 perm/sec)   p_kst 5.115090e-07   p_cons 1.902795e-01   p_joint 1.023018e-06

Joint ci ratio: 1.753076e+00	ci left: 2.780269e-07	ci right 2.612648e-06	k: 4	n:3920000
Cons ci ratio: 4.084368e-03	ci left: 1.898835e-01	ci right 1.906609e-01	k: 745866	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
NRAS   3920000 perm   7003 sec   (560 perm/sec)   p_kst 5.102041e-07   p_cons 1.902719e-01   p_joint 1.020408e-06

Joint ci ratio: 1.753076e+00	ci left: 2.773195e-07	ci right 2.606000e-06	k: 4	n:3930000
Cons ci ratio: 4.079339e-03	ci left: 1.898711e-01	ci right 1.906474e-01	k: 747718	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
NRAS   3930000 perm   7036 sec   (559 perm/sec)   p_kst 5.089059e-07   p_cons 1.902590e-01   p_joint 1.017812e-06

Joint ci ratio: 1.753076e+00	ci left: 2.766156e-07	ci right 2.599386e-06	k: 4	n:3940000
Cons ci ratio: 4.074057e-03	ci left: 1.898793e-01	ci right 1.906547e-01	k: 749651	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
NRAS   3940000 perm   7068 sec   (557 perm/sec)   p_kst 5.076142e-07   p_cons 1.902668e-01   p_joint 1.015228e-06

Joint ci ratio: 1.753076e+00	ci left: 2.759154e-07	ci right 2.592805e-06	k: 4	n:3950000
Cons ci ratio: 4.068779e-03	ci left: 1.898887e-01	ci right 1.906631e-01	k: 751589	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
NRAS   3950000 perm   7099 sec   (556 perm/sec)   p_kst 5.063291e-07   p_cons 1.902757e-01   p_joint 1.012658e-06

Joint ci ratio: 1.753076e+00	ci left: 2.752186e-07	ci right 2.586258e-06	k: 4	n:3960000
Cons ci ratio: 4.063717e-03	ci left: 1.898832e-01	ci right 1.906566e-01	k: 753468	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
NRAS   3960000 perm   7132 sec   (555 perm/sec)   p_kst 5.050505e-07   p_cons 1.902697e-01   p_joint 1.010101e-06

Joint ci ratio: 1.753076e+00	ci left: 2.745253e-07	ci right 2.579743e-06	k: 4	n:3970000
Cons ci ratio: 4.058608e-03	ci left: 1.898828e-01	ci right 1.906552e-01	k: 755367	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
NRAS   3970000 perm   7164 sec   (554 perm/sec)   p_kst 5.037783e-07   p_cons 1.902688e-01   p_joint 1.007557e-06

Joint ci ratio: 1.753076e+00	ci left: 2.738356e-07	ci right 2.573261e-06	k: 4	n:3980000
Cons ci ratio: 4.053442e-03	ci left: 1.898881e-01	ci right 1.906596e-01	k: 757289	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
NRAS   3980000 perm   7195 sec   (553 perm/sec)   p_kst 5.025126e-07   p_cons 1.902736e-01   p_joint 1.005025e-06

Joint ci ratio: 1.753076e+00	ci left: 2.731493e-07	ci right 2.566812e-06	k: 4	n:3990000
Cons ci ratio: 4.048431e-03	ci left: 1.898831e-01	ci right 1.906537e-01	k: 759170	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
NRAS   3990000 perm   7226 sec   (552 perm/sec)   p_kst 5.012531e-07   p_cons 1.902682e-01   p_joint 1.002506e-06

Joint ci ratio: 1.753076e+00	ci left: 2.724664e-07	ci right 2.560395e-06	k: 4	n:4000000
Cons ci ratio: 4.043199e-03	ci left: 1.898964e-01	ci right 1.906660e-01	k: 761124	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
NRAS   4000000 perm   7258 sec   (551 perm/sec)   p_kst 5.000000e-07   p_cons 1.902810e-01   p_joint 1.000000e-06

Joint ci ratio: 1.753076e+00	ci left: 2.717869e-07	ci right 2.554010e-06	k: 4	n:4010000
Cons ci ratio: 4.037981e-03	ci left: 1.899102e-01	ci right 1.906788e-01	k: 763080	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
NRAS   4010000 perm   7289 sec   (550 perm/sec)   p_kst 4.987531e-07   p_cons 1.902943e-01   p_joint 9.975062e-07

Joint ci ratio: 1.753076e+00	ci left: 2.711109e-07	ci right 2.547657e-06	k: 4	n:4020000
Cons ci ratio: 4.032880e-03	ci left: 1.899164e-01	ci right 1.906841e-01	k: 765006	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
NRAS   4020000 perm   7319 sec   (549 perm/sec)   p_kst 4.975124e-07   p_cons 1.903000e-01   p_joint 9.950249e-07

Joint ci ratio: 1.753076e+00	ci left: 2.704381e-07	ci right 2.541335e-06	k: 4	n:4030000
Cons ci ratio: 4.028049e-03	ci left: 1.899035e-01	ci right 1.906702e-01	k: 766855	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
NRAS   4030000 perm   7350 sec   (548 perm/sec)   p_kst 4.962779e-07   p_cons 1.902866e-01   p_joint 9.925558e-07

Joint ci ratio: 1.753076e+00	ci left: 2.697687e-07	ci right 2.535045e-06	k: 4	n:4040000
Cons ci ratio: 4.023231e-03	ci left: 1.898909e-01	ci right 1.906566e-01	k: 768705	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
NRAS   4040000 perm   7380 sec   (547 perm/sec)   p_kst 4.950495e-07   p_cons 1.902735e-01   p_joint 9.900990e-07

Joint ci ratio: 1.753076e+00	ci left: 2.691026e-07	ci right 2.528785e-06	k: 4	n:4050000
Cons ci ratio: 4.018289e-03	ci left: 1.898892e-01	ci right 1.906540e-01	k: 770599	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
NRAS   4050000 perm   7412 sec   (546 perm/sec)   p_kst 4.938272e-07   p_cons 1.902714e-01   p_joint 9.876543e-07

Joint ci ratio: 1.753076e+00	ci left: 2.684398e-07	ci right 2.522557e-06	k: 4	n:4060000
Cons ci ratio: 4.013411e-03	ci left: 1.898841e-01	ci right 1.906479e-01	k: 772479	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
NRAS   4060000 perm   7445 sec   (545 perm/sec)   p_kst 4.926108e-07   p_cons 1.902658e-01   p_joint 9.852217e-07

Joint ci ratio: 1.753076e+00	ci left: 2.677803e-07	ci right 2.516359e-06	k: 4	n:4070000
Cons ci ratio: 4.008396e-03	ci left: 1.898908e-01	ci right 1.906537e-01	k: 774407	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
NRAS   4070000 perm   7478 sec   (544 perm/sec)   p_kst 4.914005e-07   p_cons 1.902720e-01   p_joint 9.828010e-07

Joint ci ratio: 1.753076e+00	ci left: 2.671239e-07	ci right 2.510191e-06	k: 4	n:4080000
Cons ci ratio: 4.003502e-03	ci left: 1.898896e-01	ci right 1.906516e-01	k: 776303	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
NRAS   4080000 perm   7510 sec   (543 perm/sec)   p_kst 4.901961e-07   p_cons 1.902703e-01   p_joint 9.803922e-07

Joint ci ratio: 1.753076e+00	ci left: 2.664708e-07	ci right 2.504054e-06	k: 4	n:4090000
Cons ci ratio: 3.998709e-03	ci left: 1.898820e-01	ci right 1.906431e-01	k: 778173	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
NRAS   4090000 perm   7556 sec   (541 perm/sec)   p_kst 4.889976e-07   p_cons 1.902623e-01   p_joint 9.779951e-07

Joint ci ratio: 1.753076e+00	ci left: 2.658209e-07	ci right 2.497947e-06	k: 4	n:4100000
Cons ci ratio: 3.993920e-03	ci left: 1.898755e-01	ci right 1.906356e-01	k: 780047	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
NRAS   4100000 perm   7623 sec   (538 perm/sec)   p_kst 4.878049e-07   p_cons 1.902554e-01   p_joint 9.756098e-07

Joint ci ratio: 1.753076e+00	ci left: 2.651741e-07	ci right 2.491869e-06	k: 4	n:4110000
Cons ci ratio: 3.989050e-03	ci left: 1.898766e-01	ci right 1.906358e-01	k: 781952	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
NRAS   4110000 perm   7690 sec   (534 perm/sec)   p_kst 4.866180e-07   p_cons 1.902560e-01   p_joint 9.732360e-07

Joint ci ratio: 1.753076e+00	ci left: 2.645305e-07	ci right 2.485821e-06	k: 4	n:4120000
Cons ci ratio: 3.984133e-03	ci left: 1.898827e-01	ci right 1.906410e-01	k: 783878	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
NRAS   4120000 perm   7754 sec   (531 perm/sec)   p_kst 4.854369e-07   p_cons 1.902617e-01   p_joint 9.708738e-07

Joint ci ratio: 1.753076e+00	ci left: 2.638900e-07	ci right 2.479802e-06	k: 4	n:4130000
Cons ci ratio: 3.979308e-03	ci left: 1.898830e-01	ci right 1.906404e-01	k: 785780	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
NRAS   4130000 perm   7822 sec   (528 perm/sec)   p_kst 4.842615e-07   p_cons 1.902615e-01   p_joint 9.685230e-07

Joint ci ratio: 1.753076e+00	ci left: 2.632526e-07	ci right 2.473812e-06	k: 4	n:4140000
Cons ci ratio: 3.974558e-03	ci left: 1.898790e-01	ci right 1.906354e-01	k: 787664	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
NRAS   4140000 perm   7870 sec   (526 perm/sec)   p_kst 4.830918e-07   p_cons 1.902570e-01   p_joint 9.661836e-07

Joint ci ratio: 1.753076e+00	ci left: 2.626182e-07	ci right 2.467851e-06	k: 4	n:4150000
Cons ci ratio: 3.969566e-03	ci left: 1.898950e-01	ci right 1.906505e-01	k: 789631	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
NRAS   4150000 perm   7921 sec   (524 perm/sec)   p_kst 4.819277e-07   p_cons 1.902725e-01   p_joint 9.638554e-07

Joint ci ratio: 1.753076e+00	ci left: 2.619869e-07	ci right 2.461919e-06	k: 4	n:4160000
Cons ci ratio: 3.964900e-03	ci left: 1.898871e-01	ci right 1.906417e-01	k: 791499	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
NRAS   4160000 perm   7955 sec   (523 perm/sec)   p_kst 4.807692e-07   p_cons 1.902642e-01   p_joint 9.615385e-07

Joint ci ratio: 1.753076e+00	ci left: 2.613587e-07	ci right 2.456015e-06	k: 4	n:4170000
Cons ci ratio: 3.960376e-03	ci left: 1.898694e-01	ci right 1.906231e-01	k: 793326	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
NRAS   4170000 perm   7990 sec   (522 perm/sec)   p_kst 4.796163e-07   p_cons 1.902460e-01   p_joint 9.592326e-07

Joint ci ratio: 1.753076e+00	ci left: 2.607334e-07	ci right 2.450139e-06	k: 4	n:4180000
Cons ci ratio: 3.955548e-03	ci left: 1.898767e-01	ci right 1.906295e-01	k: 795257	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
NRAS   4180000 perm   8024 sec   (521 perm/sec)   p_kst 4.784689e-07   p_cons 1.902529e-01   p_joint 9.569378e-07

Joint ci ratio: 1.753076e+00	ci left: 2.601111e-07	ci right 2.444291e-06	k: 4	n:4190000
Cons ci ratio: 3.950845e-03	ci left: 1.898756e-01	ci right 1.906275e-01	k: 797153	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
NRAS   4190000 perm   8093 sec   (518 perm/sec)   p_kst 4.773270e-07   p_cons 1.902513e-01   p_joint 9.546539e-07

Joint ci ratio: 1.753076e+00	ci left: 2.594918e-07	ci right 2.438472e-06	k: 4	n:4200000
Cons ci ratio: 3.946296e-03	ci left: 1.898638e-01	ci right 1.906147e-01	k: 799004	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
NRAS   4200000 perm   8128 sec   (517 perm/sec)   p_kst 4.761905e-07   p_cons 1.902390e-01   p_joint 9.523810e-07

Joint ci ratio: 1.753076e+00	ci left: 2.588754e-07	ci right 2.432680e-06	k: 4	n:4210000
Cons ci ratio: 3.941531e-03	ci left: 1.898701e-01	ci right 1.906201e-01	k: 800931	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
NRAS   4210000 perm   8163 sec   (516 perm/sec)   p_kst 4.750594e-07   p_cons 1.902449e-01   p_joint 9.501188e-07

Joint ci ratio: 1.753076e+00	ci left: 2.582620e-07	ci right 2.426915e-06	k: 4	n:4220000
Cons ci ratio: 3.936803e-03	ci left: 1.898749e-01	ci right 1.906241e-01	k: 802852	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
NRAS   4220000 perm   8197 sec   (515 perm/sec)   p_kst 4.739336e-07   p_cons 1.902493e-01   p_joint 9.478673e-07

Joint ci ratio: 1.753076e+00	ci left: 2.576514e-07	ci right 2.421178e-06	k: 4	n:4230000
Cons ci ratio: 3.932359e-03	ci left: 1.898587e-01	ci right 1.906070e-01	k: 804684	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
NRAS   4230000 perm   8232 sec   (514 perm/sec)   p_kst 4.728132e-07   p_cons 1.902326e-01   p_joint 9.456265e-07

Joint ci ratio: 1.753076e+00	ci left: 2.570438e-07	ci right 2.415467e-06	k: 4	n:4240000
Cons ci ratio: 3.927639e-03	ci left: 1.898654e-01	ci right 1.906128e-01	k: 806613	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
NRAS   4240000 perm   8267 sec   (513 perm/sec)   p_kst 4.716981e-07   p_cons 1.902389e-01   p_joint 9.433962e-07

Joint ci ratio: 1.753076e+00	ci left: 2.564390e-07	ci right 2.409784e-06	k: 4	n:4250000
Cons ci ratio: 3.922951e-03	ci left: 1.898709e-01	ci right 1.906175e-01	k: 808537	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
NRAS   4250000 perm   8301 sec   (512 perm/sec)   p_kst 4.705882e-07   p_cons 1.902440e-01   p_joint 9.411765e-07

Joint ci ratio: 1.753076e+00	ci left: 2.558370e-07	ci right 2.404127e-06	k: 4	n:4260000
Cons ci ratio: 3.918467e-03	ci left: 1.898617e-01	ci right 1.906073e-01	k: 810398	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
NRAS   4260000 perm   8336 sec   (511 perm/sec)   p_kst 4.694836e-07   p_cons 1.902343e-01   p_joint 9.389671e-07

Joint ci ratio: 1.753076e+00	ci left: 2.552378e-07	ci right 2.398497e-06	k: 4	n:4270000
Cons ci ratio: 3.913770e-03	ci left: 1.898704e-01	ci right 1.906152e-01	k: 812336	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
NRAS   4270000 perm   8371 sec   (510 perm/sec)   p_kst 4.683841e-07   p_cons 1.902426e-01   p_joint 9.367681e-07

Joint ci ratio: 1.753076e+00	ci left: 2.546415e-07	ci right 2.392893e-06	k: 4	n:4280000
Cons ci ratio: 3.909309e-03	ci left: 1.898619e-01	ci right 1.906058e-01	k: 814200	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
NRAS   4280000 perm   8406 sec   (509 perm/sec)   p_kst 4.672897e-07   p_cons 1.902336e-01   p_joint 9.345794e-07

Joint ci ratio: 1.753076e+00	ci left: 2.540479e-07	ci right 2.387315e-06	k: 4	n:4290000
Cons ci ratio: 3.904642e-03	ci left: 1.898709e-01	ci right 1.906139e-01	k: 816139	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
NRAS   4290000 perm   8441 sec   (508 perm/sec)   p_kst 4.662005e-07   p_cons 1.902422e-01   p_joint 9.324009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.534571e-07	ci right 2.381763e-06	k: 4	n:4300000
Cons ci ratio: 3.900162e-03	ci left: 1.898663e-01	ci right 1.906085e-01	k: 818020	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
NRAS   4300000 perm   8476 sec   (507 perm/sec)   p_kst 4.651163e-07   p_cons 1.902372e-01   p_joint 9.302326e-07

Joint ci ratio: 1.753076e+00	ci left: 2.528691e-07	ci right 2.376237e-06	k: 4	n:4310000
Cons ci ratio: 3.895721e-03	ci left: 1.898600e-01	ci right 1.906013e-01	k: 819893	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
NRAS   4310000 perm   8512 sec   (506 perm/sec)   p_kst 4.640371e-07   p_cons 1.902304e-01   p_joint 9.280742e-07

Joint ci ratio: 1.753076e+00	ci left: 2.522837e-07	ci right 2.370736e-06	k: 4	n:4320000
Cons ci ratio: 3.891152e-03	ci left: 1.898649e-01	ci right 1.906054e-01	k: 821815	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
NRAS   4320000 perm   8548 sec   (505 perm/sec)   p_kst 4.629630e-07   p_cons 1.902350e-01   p_joint 9.259259e-07

Joint ci ratio: 1.753076e+00	ci left: 2.517011e-07	ci right 2.365261e-06	k: 4	n:4330000
Cons ci ratio: 3.886669e-03	ci left: 1.898644e-01	ci right 1.906040e-01	k: 823713	n:4330000
KS ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
NRAS   4330000 perm   8583 sec   (504 perm/sec)   p_kst 4.618938e-07   p_cons 1.902339e-01   p_joint 9.237875e-07

Joint ci ratio: 1.753076e+00	ci left: 2.511211e-07	ci right 2.359811e-06	k: 4	n:4340000
Cons ci ratio: 3.882018e-03	ci left: 1.898783e-01	ci right 1.906171e-01	k: 825674	n:4340000
KS ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
NRAS   4340000 perm   8617 sec   (504 perm/sec)   p_kst 4.608295e-07   p_cons 1.902475e-01   p_joint 9.216590e-07

Joint ci ratio: 1.753076e+00	ci left: 2.505438e-07	ci right 2.354387e-06	k: 4	n:4350000
Cons ci ratio: 3.877662e-03	ci left: 1.898701e-01	ci right 1.906080e-01	k: 827539	n:4350000
KS ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
NRAS   4350000 perm   8651 sec   (503 perm/sec)   p_kst 4.597701e-07   p_cons 1.902389e-01   p_joint 9.195402e-07

Joint ci ratio: 1.753076e+00	ci left: 2.499692e-07	ci right 2.348987e-06	k: 4	n:4360000
Cons ci ratio: 3.873021e-03	ci left: 1.898858e-01	ci right 1.906229e-01	k: 829508	n:4360000
KS ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
NRAS   4360000 perm   8684 sec   (502 perm/sec)   p_kst 4.587156e-07   p_cons 1.902541e-01   p_joint 9.174312e-07

Joint ci ratio: 1.753076e+00	ci left: 2.493972e-07	ci right 2.343611e-06	k: 4	n:4370000
Cons ci ratio: 3.868640e-03	ci left: 1.898820e-01	ci right 1.906182e-01	k: 831392	n:4370000
KS ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
NRAS   4370000 perm   8717 sec   (501 perm/sec)   p_kst 4.576659e-07   p_cons 1.902499e-01   p_joint 9.153318e-07

Joint ci ratio: 1.753076e+00	ci left: 2.488278e-07	ci right 2.338261e-06	k: 4	n:4380000
Cons ci ratio: 3.864311e-03	ci left: 1.898752e-01	ci right 1.906106e-01	k: 833263	n:4380000
KS ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
NRAS   4380000 perm   8757 sec   (500 perm/sec)   p_kst 4.566210e-07   p_cons 1.902427e-01   p_joint 9.132420e-07

Joint ci ratio: 1.753076e+00	ci left: 2.482610e-07	ci right 2.332934e-06	k: 4	n:4390000
Cons ci ratio: 3.859940e-03	ci left: 1.898730e-01	ci right 1.906076e-01	k: 835154	n:4390000
KS ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
NRAS   4390000 perm   8830 sec   (497 perm/sec)   p_kst 4.555809e-07   p_cons 1.902401e-01   p_joint 9.111617e-07

Joint ci ratio: 1.753076e+00	ci left: 2.476967e-07	ci right 2.327632e-06	k: 4	n:4400000
Cons ci ratio: 3.855407e-03	ci left: 1.898849e-01	ci right 1.906187e-01	k: 837107	n:4400000
KS ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
NRAS   4400000 perm   8901 sec   (494 perm/sec)   p_kst 4.545455e-07   p_cons 1.902516e-01   p_joint 9.090909e-07

Joint ci ratio: 1.753076e+00	ci left: 2.471351e-07	ci right 2.322354e-06	k: 4	n:4410000
Cons ci ratio: 3.851015e-03	ci left: 1.898868e-01	ci right 1.906197e-01	k: 839016	n:4410000
KS ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
NRAS   4410000 perm   8972 sec   (492 perm/sec)   p_kst 4.535147e-07   p_cons 1.902531e-01   p_joint 9.070295e-07

Joint ci ratio: 1.753076e+00	ci left: 2.465759e-07	ci right 2.317100e-06	k: 4	n:4420000
Cons ci ratio: 3.846466e-03	ci left: 1.899025e-01	ci right 1.906346e-01	k: 840986	n:4420000
KS ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
NRAS   4420000 perm   9044 sec   (489 perm/sec)   p_kst 4.524887e-07   p_cons 1.902683e-01   p_joint 9.049774e-07

Joint ci ratio: 1.753076e+00	ci left: 2.460193e-07	ci right 2.311869e-06	k: 4	n:4430000
Cons ci ratio: 3.842234e-03	ci left: 1.898940e-01	ci right 1.906252e-01	k: 842849	n:4430000
KS ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
NRAS   4430000 perm   9117 sec   (486 perm/sec)   p_kst 4.514673e-07   p_cons 1.902594e-01   p_joint 9.029345e-07

Joint ci ratio: 1.753076e+00	ci left: 2.454652e-07	ci right 2.306662e-06	k: 4	n:4440000
Cons ci ratio: 3.837909e-03	ci left: 1.898940e-01	ci right 1.906244e-01	k: 844750	n:4440000
KS ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
NRAS   4440000 perm   9170 sec   (484 perm/sec)   p_kst 4.504505e-07   p_cons 1.902590e-01   p_joint 9.009009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.449136e-07	ci right 2.301479e-06	k: 4	n:4450000
Cons ci ratio: 3.833823e-03	ci left: 1.898761e-01	ci right 1.906057e-01	k: 846571	n:4450000
KS ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
NRAS   4450000 perm   9227 sec   (482 perm/sec)   p_kst 4.494382e-07   p_cons 1.902407e-01   p_joint 8.988764e-07

Joint ci ratio: 1.753076e+00	ci left: 2.443645e-07	ci right 2.296319e-06	k: 4	n:4460000
Cons ci ratio: 3.829370e-03	ci left: 1.898887e-01	ci right 1.906175e-01	k: 848528	n:4460000
KS ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
NRAS   4460000 perm   9301 sec   (479 perm/sec)   p_kst 4.484305e-07   p_cons 1.902529e-01   p_joint 8.968610e-07

Joint ci ratio: 1.753076e+00	ci left: 2.438178e-07	ci right 2.291182e-06	k: 4	n:4470000
Cons ci ratio: 3.825127e-03	ci left: 1.898857e-01	ci right 1.906136e-01	k: 850415	n:4470000
KS ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
NRAS   4470000 perm   9345 sec   (478 perm/sec)   p_kst 4.474273e-07   p_cons 1.902494e-01   p_joint 8.948546e-07

Joint ci ratio: 1.753076e+00	ci left: 2.432736e-07	ci right 2.286067e-06	k: 4	n:4480000
Cons ci ratio: 3.820868e-03	ci left: 1.898851e-01	ci right 1.906122e-01	k: 852313	n:4480000
KS ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
NRAS   4480000 perm   9382 sec   (478 perm/sec)   p_kst 4.464286e-07   p_cons 1.902484e-01   p_joint 8.928571e-07

Joint ci ratio: 1.753076e+00	ci left: 2.427318e-07	ci right 2.280976e-06	k: 4	n:4490000
Cons ci ratio: 3.816491e-03	ci left: 1.898952e-01	ci right 1.906215e-01	k: 854259	n:4490000
KS ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
NRAS   4490000 perm   9419 sec   (477 perm/sec)   p_kst 4.454343e-07   p_cons 1.902581e-01   p_joint 8.908686e-07

Joint ci ratio: 1.753076e+00	ci left: 2.421924e-07	ci right 2.275907e-06	k: 4	n:4500000
Cons ci ratio: 3.812159e-03	ci left: 1.899028e-01	ci right 1.906283e-01	k: 856194	n:4500000
KS ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
NRAS   4500000 perm   9481 sec   (475 perm/sec)   p_kst 4.444444e-07   p_cons 1.902653e-01   p_joint 8.888889e-07

Joint ci ratio: 1.753076e+00	ci left: 2.416553e-07	ci right 2.270861e-06	k: 4	n:4510000
Cons ci ratio: 3.807781e-03	ci left: 1.899152e-01	ci right 1.906400e-01	k: 858151	n:4510000
KS ci ratio: 2.263212e+00	ci left: 5.370494e-08	ci right 1.601925e-06	k: 2	n:4510000
NRAS   4510000 perm   9521 sec   (474 perm/sec)   p_kst 4.434590e-07   p_cons 1.902774e-01   p_joint 8.869180e-07

Joint ci ratio: 1.753076e+00	ci left: 2.411207e-07	ci right 2.265837e-06	k: 4	n:4520000
Cons ci ratio: 3.803618e-03	ci left: 1.899115e-01	ci right 1.906354e-01	k: 860035	n:4520000
KS ci ratio: 2.263212e+00	ci left: 5.358613e-08	ci right 1.598381e-06	k: 2	n:4520000
NRAS   4520000 perm   9557 sec   (473 perm/sec)   p_kst 4.424779e-07   p_cons 1.902732e-01   p_joint 8.849558e-07

Joint ci ratio: 1.753076e+00	ci left: 2.405884e-07	ci right 2.260835e-06	k: 4	n:4530000
Cons ci ratio: 3.799387e-03	ci left: 1.899143e-01	ci right 1.906375e-01	k: 861949	n:4530000
KS ci ratio: 2.263212e+00	ci left: 5.346784e-08	ci right 1.594853e-06	k: 2	n:4530000
NRAS   4530000 perm   9594 sec   (472 perm/sec)   p_kst 4.415011e-07   p_cons 1.902757e-01   p_joint 8.830022e-07

Joint ci ratio: 1.753076e+00	ci left: 2.400585e-07	ci right 2.255855e-06	k: 4	n:4540000
Cons ci ratio: 3.795238e-03	ci left: 1.899117e-01	ci right 1.906341e-01	k: 863838	n:4540000
KS ci ratio: 2.263212e+00	ci left: 5.335007e-08	ci right 1.591340e-06	k: 2	n:4540000
NRAS   4540000 perm   9631 sec   (471 perm/sec)   p_kst 4.405286e-07   p_cons 1.902727e-01   p_joint 8.810573e-07

Joint ci ratio: 1.753076e+00	ci left: 2.395309e-07	ci right 2.250897e-06	k: 4	n:4550000
Cons ci ratio: 3.791151e-03	ci left: 1.899051e-01	ci right 1.906267e-01	k: 865709	n:4550000
KS ci ratio: 2.263212e+00	ci left: 5.323281e-08	ci right 1.587843e-06	k: 2	n:4550000
NRAS   4550000 perm   9669 sec   (471 perm/sec)   p_kst 4.395604e-07   p_cons 1.902657e-01   p_joint 8.791209e-07

Joint ci ratio: 1.753076e+00	ci left: 2.390056e-07	ci right 2.245961e-06	k: 4	n:4560000
Cons ci ratio: 3.787031e-03	ci left: 1.899023e-01	ci right 1.906231e-01	k: 867597	n:4560000
KS ci ratio: 2.263212e+00	ci left: 5.311607e-08	ci right 1.584360e-06	k: 2	n:4560000
NRAS   4560000 perm   9705 sec   (470 perm/sec)   p_kst 4.385965e-07   p_cons 1.902625e-01   p_joint 8.771930e-07

Joint ci ratio: 1.753076e+00	ci left: 2.384826e-07	ci right 2.241046e-06	k: 4	n:4570000
Cons ci ratio: 3.782712e-03	ci left: 1.899168e-01	ci right 1.906368e-01	k: 869564	n:4570000
KS ci ratio: 2.263212e+00	ci left: 5.299985e-08	ci right 1.580894e-06	k: 2	n:4570000
NRAS   4570000 perm   9742 sec   (469 perm/sec)   p_kst 4.376368e-07   p_cons 1.902766e-01   p_joint 8.752735e-07

Joint ci ratio: 1.753076e+00	ci left: 2.379619e-07	ci right 2.236153e-06	k: 4	n:4580000
Cons ci ratio: 3.778430e-03	ci left: 1.899295e-01	ci right 1.906487e-01	k: 871523	n:4580000
KS ci ratio: 2.263212e+00	ci left: 5.288413e-08	ci right 1.577442e-06	k: 2	n:4580000
NRAS   4580000 perm   9780 sec   (468 perm/sec)   p_kst 4.366812e-07   p_cons 1.902889e-01   p_joint 8.733624e-07

Joint ci ratio: 1.753076e+00	ci left: 2.374435e-07	ci right 2.231281e-06	k: 4	n:4590000
Cons ci ratio: 3.774221e-03	ci left: 1.899373e-01	ci right 1.906557e-01	k: 873460	n:4590000
KS ci ratio: 2.263212e+00	ci left: 5.276891e-08	ci right 1.574005e-06	k: 2	n:4590000
NRAS   4590000 perm   9818 sec   (468 perm/sec)   p_kst 4.357298e-07   p_cons 1.902963e-01   p_joint 8.714597e-07

Joint ci ratio: 1.753076e+00	ci left: 2.369273e-07	ci right 2.226431e-06	k: 4	n:4600000
Cons ci ratio: 3.770031e-03	ci left: 1.899446e-01	ci right 1.906623e-01	k: 875395	n:4600000
KS ci ratio: 2.263212e+00	ci left: 5.265420e-08	ci right 1.570583e-06	k: 2	n:4600000
NRAS   4600000 perm   9855 sec   (467 perm/sec)   p_kst 4.347826e-07   p_cons 1.903033e-01   p_joint 8.695652e-07

Joint ci ratio: 1.753076e+00	ci left: 2.364134e-07	ci right 2.221601e-06	k: 4	n:4610000
Cons ci ratio: 3.765722e-03	ci left: 1.899628e-01	ci right 1.906797e-01	k: 877380	n:4610000
KS ci ratio: 2.263212e+00	ci left: 5.253998e-08	ci right 1.567176e-06	k: 2	n:4610000
NRAS   4610000 perm   9893 sec   (466 perm/sec)   p_kst 4.338395e-07   p_cons 1.903210e-01   p_joint 8.676790e-07

Joint ci ratio: 1.753076e+00	ci left: 2.359016e-07	ci right 2.216793e-06	k: 4	n:4620000
Cons ci ratio: 3.761703e-03	ci left: 1.899584e-01	ci right 1.906745e-01	k: 879261	n:4620000
KS ci ratio: 2.263212e+00	ci left: 5.242626e-08	ci right 1.563784e-06	k: 2	n:4620000
NRAS   4620000 perm   9931 sec   (465 perm/sec)   p_kst 4.329004e-07   p_cons 1.903162e-01   p_joint 8.658009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.353921e-07	ci right 2.212005e-06	k: 4	n:4630000
Cons ci ratio: 3.757550e-03	ci left: 1.899661e-01	ci right 1.906814e-01	k: 881198	n:4630000
KS ci ratio: 2.263212e+00	ci left: 5.231302e-08	ci right 1.560407e-06	k: 2	n:4630000
NRAS   4630000 perm   9970 sec   (464 perm/sec)   p_kst 4.319654e-07   p_cons 1.903235e-01   p_joint 8.639309e-07

Joint ci ratio: 1.753076e+00	ci left: 2.348848e-07	ci right 2.207237e-06	k: 4	n:4640000
Cons ci ratio: 3.753491e-03	ci left: 1.899670e-01	ci right 1.906816e-01	k: 883104	n:4640000
KS ci ratio: 2.263212e+00	ci left: 5.220028e-08	ci right 1.557044e-06	k: 2	n:4640000
NRAS   4640000 perm   10007 sec   (464 perm/sec)   p_kst 4.310345e-07   p_cons 1.903241e-01   p_joint 8.620690e-07

Joint ci ratio: 1.753076e+00	ci left: 2.343797e-07	ci right 2.202491e-06	k: 4	n:4650000
Cons ci ratio: 3.749289e-03	ci left: 1.899809e-01	ci right 1.906947e-01	k: 885070	n:4650000
KS ci ratio: 2.263212e+00	ci left: 5.208802e-08	ci right 1.553695e-06	k: 2	n:4650000
NRAS   4650000 perm   10044 sec   (463 perm/sec)   p_kst 4.301075e-07   p_cons 1.903376e-01   p_joint 8.602151e-07

Joint ci ratio: 1.753076e+00	ci left: 2.338767e-07	ci right 2.197764e-06	k: 4	n:4660000
Cons ci ratio: 3.745205e-03	ci left: 1.899861e-01	ci right 1.906992e-01	k: 886996	n:4660000
KS ci ratio: 2.263212e+00	ci left: 5.197624e-08	ci right 1.550361e-06	k: 2	n:4660000
NRAS   4660000 perm   10080 sec   (462 perm/sec)   p_kst 4.291845e-07   p_cons 1.903425e-01   p_joint 8.583691e-07

Joint ci ratio: 1.753076e+00	ci left: 2.333759e-07	ci right 2.193058e-06	k: 4	n:4670000
Cons ci ratio: 3.741298e-03	ci left: 1.899779e-01	ci right 1.906902e-01	k: 888859	n:4670000
KS ci ratio: 2.263212e+00	ci left: 5.186495e-08	ci right 1.547041e-06	k: 2	n:4670000
NRAS   4670000 perm   10116 sec   (462 perm/sec)   p_kst 4.282655e-07   p_cons 1.903338e-01   p_joint 8.565310e-07

Joint ci ratio: 1.753076e+00	ci left: 2.328773e-07	ci right 2.188372e-06	k: 4	n:4680000
Cons ci ratio: 3.737157e-03	ci left: 1.899899e-01	ci right 1.907015e-01	k: 890817	n:4680000
KS ci ratio: 2.263212e+00	ci left: 5.175412e-08	ci right 1.543736e-06	k: 2	n:4680000
NRAS   4680000 perm   10151 sec   (461 perm/sec)   p_kst 4.273504e-07   p_cons 1.903455e-01   p_joint 8.547009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.323807e-07	ci right 2.183706e-06	k: 4	n:4690000
Cons ci ratio: 3.733237e-03	ci left: 1.899849e-01	ci right 1.906957e-01	k: 892695	n:4690000
KS ci ratio: 2.263212e+00	ci left: 5.164377e-08	ci right 1.540444e-06	k: 2	n:4690000
NRAS   4690000 perm   10187 sec   (460 perm/sec)   p_kst 4.264392e-07   p_cons 1.903401e-01   p_joint 8.528785e-07

Joint ci ratio: 1.753076e+00	ci left: 2.318863e-07	ci right 2.179060e-06	k: 4	n:4700000
Cons ci ratio: 3.729377e-03	ci left: 1.899758e-01	ci right 1.906858e-01	k: 894554	n:4700000
KS ci ratio: 2.263212e+00	ci left: 5.153389e-08	ci right 1.537167e-06	k: 2	n:4700000
NRAS   4700000 perm   10223 sec   (460 perm/sec)   p_kst 4.255319e-07   p_cons 1.903306e-01   p_joint 8.510638e-07

Joint ci ratio: 1.753076e+00	ci left: 2.313940e-07	ci right 2.174434e-06	k: 4	n:4710000
Cons ci ratio: 3.725458e-03	ci left: 1.899727e-01	ci right 1.906820e-01	k: 896441	n:4710000
KS ci ratio: 2.263212e+00	ci left: 5.142448e-08	ci right 1.533903e-06	k: 2	n:4710000
NRAS   4710000 perm   10259 sec   (459 perm/sec)   p_kst 4.246285e-07   p_cons 1.903272e-01   p_joint 8.492569e-07

Joint ci ratio: 1.753076e+00	ci left: 2.309037e-07	ci right 2.169827e-06	k: 4	n:4720000
Cons ci ratio: 3.721607e-03	ci left: 1.899650e-01	ci right 1.906735e-01	k: 898306	n:4720000
KS ci ratio: 2.263212e+00	ci left: 5.131553e-08	ci right 1.530653e-06	k: 2	n:4720000
NRAS   4720000 perm   10294 sec   (459 perm/sec)   p_kst 4.237288e-07   p_cons 1.903191e-01   p_joint 8.474576e-07

Joint ci ratio: 1.753076e+00	ci left: 2.304156e-07	ci right 2.165239e-06	k: 4	n:4730000
Cons ci ratio: 3.717789e-03	ci left: 1.899556e-01	ci right 1.906634e-01	k: 900163	n:4730000
KS ci ratio: 2.263212e+00	ci left: 5.120704e-08	ci right 1.527417e-06	k: 2	n:4730000
NRAS   4730000 perm   10330 sec   (458 perm/sec)   p_kst 4.228330e-07   p_cons 1.903093e-01   p_joint 8.456660e-07

Joint ci ratio: 1.753076e+00	ci left: 2.299295e-07	ci right 2.160671e-06	k: 4	n:4740000
Cons ci ratio: 3.713916e-03	ci left: 1.899518e-01	ci right 1.906587e-01	k: 902046	n:4740000
KS ci ratio: 2.263212e+00	ci left: 5.109901e-08	ci right 1.524195e-06	k: 2	n:4740000
NRAS   4740000 perm   10366 sec   (457 perm/sec)   p_kst 4.219409e-07   p_cons 1.903051e-01   p_joint 8.438819e-07

Joint ci ratio: 1.753076e+00	ci left: 2.294454e-07	ci right 2.156123e-06	k: 4	n:4750000
Cons ci ratio: 3.709970e-03	ci left: 1.899551e-01	ci right 1.906613e-01	k: 903963	n:4750000
KS ci ratio: 2.263212e+00	ci left: 5.099143e-08	ci right 1.520986e-06	k: 2	n:4750000
NRAS   4750000 perm   10402 sec   (457 perm/sec)   p_kst 4.210526e-07   p_cons 1.903080e-01   p_joint 8.421053e-07

Joint ci ratio: 1.753076e+00	ci left: 2.289634e-07	ci right 2.151593e-06	k: 4	n:4760000
Cons ci ratio: 3.706068e-03	ci left: 1.899556e-01	ci right 1.906611e-01	k: 905867	n:4760000
KS ci ratio: 2.263212e+00	ci left: 5.088431e-08	ci right 1.517791e-06	k: 2	n:4760000
NRAS   4760000 perm   10438 sec   (456 perm/sec)   p_kst 4.201681e-07   p_cons 1.903082e-01   p_joint 8.403361e-07

Joint ci ratio: 1.753076e+00	ci left: 2.284834e-07	ci right 2.147082e-06	k: 4	n:4770000
Cons ci ratio: 3.702109e-03	ci left: 1.899621e-01	ci right 1.906668e-01	k: 907799	n:4770000
KS ci ratio: 2.263212e+00	ci left: 5.077763e-08	ci right 1.514609e-06	k: 2	n:4770000
NRAS   4770000 perm   10474 sec   (455 perm/sec)   p_kst 4.192872e-07   p_cons 1.903143e-01   p_joint 8.385744e-07

Joint ci ratio: 1.753076e+00	ci left: 2.280054e-07	ci right 2.142590e-06	k: 4	n:4780000
Cons ci ratio: 3.698192e-03	ci left: 1.899660e-01	ci right 1.906700e-01	k: 909719	n:4780000
KS ci ratio: 2.263212e+00	ci left: 5.067140e-08	ci right 1.511440e-06	k: 2	n:4780000
NRAS   4780000 perm   10511 sec   (455 perm/sec)   p_kst 4.184100e-07   p_cons 1.903178e-01   p_joint 8.368201e-07

Joint ci ratio: 1.753076e+00	ci left: 2.275294e-07	ci right 2.138117e-06	k: 4	n:4790000
Cons ci ratio: 3.694382e-03	ci left: 1.899619e-01	ci right 1.906652e-01	k: 911601	n:4790000
KS ci ratio: 2.263212e+00	ci left: 5.056562e-08	ci right 1.508285e-06	k: 2	n:4790000
NRAS   4790000 perm   10548 sec   (454 perm/sec)   p_kst 4.175365e-07   p_cons 1.903134e-01   p_joint 8.350731e-07

Joint ci ratio: 1.753076e+00	ci left: 2.270553e-07	ci right 2.133663e-06	k: 4	n:4800000
Cons ci ratio: 3.690517e-03	ci left: 1.899635e-01	ci right 1.906660e-01	k: 913510	n:4800000
KS ci ratio: 2.263212e+00	ci left: 5.046027e-08	ci right 1.505142e-06	k: 2	n:4800000
NRAS   4800000 perm   10584 sec   (454 perm/sec)   p_kst 4.166667e-07   p_cons 1.903146e-01   p_joint 8.333333e-07

Joint ci ratio: 1.600332e+00	ci left: 3.375232e-07	ci right 2.425847e-06	k: 5	n:4810000
Cons ci ratio: 3.686655e-03	ci left: 1.899659e-01	ci right 1.906677e-01	k: 915423	n:4810000
KS ci ratio: 2.263212e+00	ci left: 5.035536e-08	ci right 1.502013e-06	k: 2	n:4810000
NRAS   4810000 perm   10620 sec   (453 perm/sec)   p_kst 4.158004e-07   p_cons 1.903166e-01   p_joint 1.039501e-06

Joint ci ratio: 1.600332e+00	ci left: 3.368230e-07	ci right 2.420814e-06	k: 5	n:4820000
Cons ci ratio: 3.682898e-03	ci left: 1.899604e-01	ci right 1.906615e-01	k: 917298	n:4820000
KS ci ratio: 2.263212e+00	ci left: 5.025089e-08	ci right 1.498897e-06	k: 2	n:4820000
NRAS   4820000 perm   10657 sec   (452 perm/sec)   p_kst 4.149378e-07   p_cons 1.903108e-01   p_joint 1.037344e-06

Joint ci ratio: 1.600332e+00	ci left: 3.361256e-07	ci right 2.415802e-06	k: 5	n:4830000
Cons ci ratio: 3.679131e-03	ci left: 1.899568e-01	ci right 1.906572e-01	k: 919182	n:4830000
KS ci ratio: 2.263212e+00	ci left: 5.014685e-08	ci right 1.495794e-06	k: 2	n:4830000
NRAS   4830000 perm   10694 sec   (452 perm/sec)   p_kst 4.140787e-07   p_cons 1.903068e-01   p_joint 1.035197e-06

Joint ci ratio: 1.600332e+00	ci left: 3.354312e-07	ci right 2.410811e-06	k: 5	n:4840000
Cons ci ratio: 3.675242e-03	ci left: 1.899644e-01	ci right 1.906641e-01	k: 921120	n:4840000
KS ci ratio: 2.263212e+00	ci left: 5.004324e-08	ci right 1.492703e-06	k: 2	n:4840000
NRAS   4840000 perm   10731 sec   (451 perm/sec)   p_kst 4.132231e-07   p_cons 1.903140e-01   p_joint 1.033058e-06

Joint ci ratio: 1.600332e+00	ci left: 3.347395e-07	ci right 2.405840e-06	k: 5	n:4850000
Cons ci ratio: 3.671444e-03	ci left: 1.899654e-01	ci right 1.906643e-01	k: 923026	n:4850000
KS ci ratio: 2.263212e+00	ci left: 4.994006e-08	ci right 1.489626e-06	k: 2	n:4850000
NRAS   4850000 perm   10767 sec   (450 perm/sec)   p_kst 4.123711e-07   p_cons 1.903146e-01   p_joint 1.030928e-06

Joint ci ratio: 1.600332e+00	ci left: 3.340508e-07	ci right 2.400890e-06	k: 5	n:4860000
Cons ci ratio: 3.667580e-03	ci left: 1.899729e-01	ci right 1.906711e-01	k: 924964	n:4860000
KS ci ratio: 2.263212e+00	ci left: 4.983730e-08	ci right 1.486560e-06	k: 2	n:4860000
NRAS   4860000 perm   10804 sec   (450 perm/sec)   p_kst 4.115226e-07   p_cons 1.903218e-01   p_joint 1.028807e-06

Joint ci ratio: 1.600332e+00	ci left: 3.333648e-07	ci right 2.395960e-06	k: 5	n:4870000
Cons ci ratio: 3.663898e-03	ci left: 1.899660e-01	ci right 1.906635e-01	k: 926832	n:4870000
KS ci ratio: 2.263212e+00	ci left: 4.973497e-08	ci right 1.483508e-06	k: 2	n:4870000
NRAS   4870000 perm   10841 sec   (449 perm/sec)   p_kst 4.106776e-07   p_cons 1.903146e-01   p_joint 1.026694e-06

Joint ci ratio: 1.600332e+00	ci left: 3.326817e-07	ci right 2.391050e-06	k: 5	n:4880000
Cons ci ratio: 3.660233e-03	ci left: 1.899588e-01	ci right 1.906555e-01	k: 928698	n:4880000
KS ci ratio: 2.263212e+00	ci left: 4.963305e-08	ci right 1.480468e-06	k: 2	n:4880000
NRAS   4880000 perm   10877 sec   (449 perm/sec)   p_kst 4.098361e-07   p_cons 1.903070e-01   p_joint 1.024590e-06

Joint ci ratio: 1.600332e+00	ci left: 3.320014e-07	ci right 2.386160e-06	k: 5	n:4890000
Cons ci ratio: 3.656401e-03	ci left: 1.899665e-01	ci right 1.906625e-01	k: 930637	n:4890000
KS ci ratio: 2.263212e+00	ci left: 4.953155e-08	ci right 1.477440e-06	k: 2	n:4890000
NRAS   4890000 perm   10914 sec   (448 perm/sec)   p_kst 4.089980e-07   p_cons 1.903143e-01   p_joint 1.022495e-06

Joint ci ratio: 1.600332e+00	ci left: 3.313238e-07	ci right 2.381291e-06	k: 5	n:4900000
Cons ci ratio: 3.652867e-03	ci left: 1.899501e-01	ci right 1.906454e-01	k: 932458	n:4900000
KS ci ratio: 2.263212e+00	ci left: 4.943047e-08	ci right 1.474425e-06	k: 2	n:4900000
NRAS   4900000 perm   10951 sec   (447 perm/sec)   p_kst 4.081633e-07   p_cons 1.902976e-01   p_joint 1.020408e-06

Joint ci ratio: 1.600332e+00	ci left: 3.306490e-07	ci right 2.376441e-06	k: 5	n:4910000
Cons ci ratio: 3.649338e-03	ci left: 1.899341e-01	ci right 1.906287e-01	k: 934281	n:4910000
KS ci ratio: 2.263212e+00	ci left: 4.932980e-08	ci right 1.471422e-06	k: 2	n:4910000
NRAS   4910000 perm   10988 sec   (447 perm/sec)   p_kst 4.073320e-07   p_cons 1.902813e-01   p_joint 1.018330e-06

Joint ci ratio: 1.600332e+00	ci left: 3.299770e-07	ci right 2.371611e-06	k: 5	n:4920000
Cons ci ratio: 3.645661e-03	ci left: 1.899317e-01	ci right 1.906256e-01	k: 936170	n:4920000
KS ci ratio: 2.263212e+00	ci left: 4.922953e-08	ci right 1.468432e-06	k: 2	n:4920000
NRAS   4920000 perm   11026 sec   (446 perm/sec)   p_kst 4.065041e-07   p_cons 1.902785e-01   p_joint 1.016260e-06

Joint ci ratio: 1.600332e+00	ci left: 3.293077e-07	ci right 2.366800e-06	k: 5	n:4930000
Cons ci ratio: 3.642165e-03	ci left: 1.899149e-01	ci right 1.906080e-01	k: 937988	n:4930000
KS ci ratio: 2.263212e+00	ci left: 4.912967e-08	ci right 1.465453e-06	k: 2	n:4930000
NRAS   4930000 perm   11063 sec   (446 perm/sec)   p_kst 4.056795e-07   p_cons 1.902613e-01   p_joint 1.014199e-06

Joint ci ratio: 1.600332e+00	ci left: 3.286410e-07	ci right 2.362009e-06	k: 5	n:4940000
Cons ci ratio: 3.638487e-03	ci left: 1.899143e-01	ci right 1.906067e-01	k: 939886	n:4940000
KS ci ratio: 2.263212e+00	ci left: 4.903022e-08	ci right 1.462487e-06	k: 2	n:4940000
NRAS   4940000 perm   11100 sec   (445 perm/sec)   p_kst 4.048583e-07   p_cons 1.902603e-01   p_joint 1.012146e-06

Joint ci ratio: 1.600332e+00	ci left: 3.279771e-07	ci right 2.357237e-06	k: 5	n:4950000
Cons ci ratio: 3.634857e-03	ci left: 1.899107e-01	ci right 1.906024e-01	k: 941769	n:4950000
KS ci ratio: 2.263212e+00	ci left: 4.893117e-08	ci right 1.459532e-06	k: 2	n:4950000
NRAS   4950000 perm   11139 sec   (444 perm/sec)   p_kst 4.040404e-07   p_cons 1.902564e-01   p_joint 1.010101e-06

Joint ci ratio: 1.600332e+00	ci left: 3.273159e-07	ci right 2.352485e-06	k: 5	n:4960000
Cons ci ratio: 3.631233e-03	ci left: 1.899075e-01	ci right 1.905985e-01	k: 943654	n:4960000
KS ci ratio: 2.263212e+00	ci left: 4.883252e-08	ci right 1.456589e-06	k: 2	n:4960000
NRAS   4960000 perm   11176 sec   (444 perm/sec)   p_kst 4.032258e-07   p_cons 1.902528e-01   p_joint 1.008065e-06

Joint ci ratio: 1.600332e+00	ci left: 3.266573e-07	ci right 2.347751e-06	k: 5	n:4970000
Cons ci ratio: 3.627527e-03	ci left: 1.899121e-01	ci right 1.906025e-01	k: 945578	n:4970000
KS ci ratio: 2.263212e+00	ci left: 4.873426e-08	ci right 1.453659e-06	k: 2	n:4970000
NRAS   4970000 perm   11214 sec   (443 perm/sec)   p_kst 4.024145e-07   p_cons 1.902571e-01   p_joint 1.006036e-06

Joint ci ratio: 1.600332e+00	ci left: 3.260014e-07	ci right 2.343037e-06	k: 5	n:4980000
Cons ci ratio: 3.623776e-03	ci left: 1.899216e-01	ci right 1.906113e-01	k: 947526	n:4980000
KS ci ratio: 2.263212e+00	ci left: 4.863640e-08	ci right 1.450740e-06	k: 2	n:4980000
NRAS   4980000 perm   11252 sec   (443 perm/sec)   p_kst 4.016064e-07   p_cons 1.902663e-01   p_joint 1.004016e-06

Joint ci ratio: 1.600332e+00	ci left: 3.253481e-07	ci right 2.338342e-06	k: 5	n:4990000
Cons ci ratio: 3.620248e-03	ci left: 1.899130e-01	ci right 1.906020e-01	k: 949384	n:4990000
KS ci ratio: 2.263212e+00	ci left: 4.853894e-08	ci right 1.447832e-06	k: 2	n:4990000
NRAS   4990000 perm   11290 sec   (442 perm/sec)   p_kst 4.008016e-07   p_cons 1.902573e-01   p_joint 1.002004e-06

Joint ci ratio: 1.600332e+00	ci left: 3.246974e-07	ci right 2.333665e-06	k: 5	n:5000000
Cons ci ratio: 3.616454e-03	ci left: 1.899280e-01	ci right 1.906163e-01	k: 951360	n:5000000
KS ci ratio: 2.263212e+00	ci left: 4.844186e-08	ci right 1.444937e-06	k: 2	n:5000000
NRAS   5000000 perm   11329 sec   (441 perm/sec)   p_kst 4.000000e-07   p_cons 1.902720e-01   p_joint 1.000000e-06

Outputting figure to mutsig2_images.part000000000117/NRAS.4_586_5000000_4e-07_0.19027_1e-06.png
                gene_name: NRAS
               theta_stop: 2.3 
                    nperm: 5000000 
                     p_ks: 4.00e-07 
        ci_ks_bounds_left: 4.84e-08 
       ci_ks_bounds_right: 1.44e-06 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1.00e-06 
     ci_joint_bounds_left: 3.25e-07 
    ci_joint_bounds_right: 2.33e-06 

Current progress: 46 percent done.
NRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
Cons ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
KS ci ratio: 8.256589e-03	ci left: 9.534652e-01	ci right 9.614655e-01	k: 9576	n:10000
NRP1   10000 perm   2 sec   (5466 perm/sec)   p_kst 9.576000e-01   p_cons 4.499000e-01   p_joint 7.775000e-01

Outputting figure to mutsig2_images.part000000000117/NRP1.4_2851_10000_0.9576_0.4499_0.7775.png
                gene_name: NRP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 48 percent done.
NR1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
Cons ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
KS ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
NR1D1   10000 perm   2 sec   (6065 perm/sec)   p_kst 7.750000e-01   p_cons 1.053000e-01   p_joint 3.306000e-01

Joint ci ratio: 3.677448e-02	ci left: 3.555841e-01	ci right 3.689560e-01	k: 7245	n:20000
Cons ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
KS ci ratio: 1.502730e-02	ci left: 7.669788e-01	ci right 7.786418e-01	k: 15457	n:20000
NR1D1   20000 perm   4 sec   (5382 perm/sec)   p_kst 7.728500e-01   p_cons 1.080000e-01   p_joint 3.622500e-01

Outputting figure to mutsig2_images.part000000000117/NR1D1.3_1877_20000_0.77285_0.108_0.36225.png
                gene_name: NR1D1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
NR1H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
Cons ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
KS ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
NR1H2   10000 perm   2 sec   (6465 perm/sec)   p_kst 6.562000e-01   p_cons 4.099000e-01   p_joint 6.408000e-01

Outputting figure to mutsig2_images.part000000000117/NR1H2.3_1415_10000_0.6562_0.4099_0.6408.png
                gene_name: NR1H2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
NR3C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.634893e-03	ci left: 9.940977e-01	ci right 9.968012e-01	k: 9956	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
NR3C1   10000 perm   2 sec   (5891 perm/sec)   p_kst 9.349000e-01   p_cons 9.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR3C1.3_2421_10000_0.9349_0.9956_1.png
                gene_name: NR3C1
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
NR6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
KS ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
NR6A1   10000 perm   2 sec   (6356 perm/sec)   p_kst 4.690000e-02   p_cons 5.980000e-02   p_joint 5.220000e-02

Joint ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
Cons ci ratio: 1.095653e-01	ci left: 5.684523e-02	ci right 6.348336e-02	k: 1202	n:20000
KS ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
NR6A1   20000 perm   4 sec   (5652 perm/sec)   p_kst 4.450000e-02   p_cons 6.010000e-02   p_joint 3.340000e-02

Joint ci ratio: 8.311070e-02	ci left: 6.615712e-02	ci right 7.192668e-02	k: 2070	n:30000
Cons ci ratio: 8.861434e-02	ci left: 5.851355e-02	ci right 6.397180e-02	k: 1836	n:30000
KS ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
NR6A1   30000 perm   6 sec   (5207 perm/sec)   p_kst 4.413333e-02   p_cons 6.120000e-02   p_joint 6.900000e-02

Joint ci ratio: 7.839810e-02	ci left: 5.651418e-02	ci right 6.115012e-02	k: 2352	n:40000
Cons ci ratio: 7.656511e-02	ci left: 5.914048e-02	ci right 6.387342e-02	k: 2459	n:40000
KS ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
NR6A1   40000 perm   8 sec   (5024 perm/sec)   p_kst 4.280000e-02   p_cons 6.147500e-02   p_joint 5.880000e-02

Outputting figure to mutsig2_images.part000000000117/NR6A1.3_1483_40000_0.0428_0.061475_0.0588.png
                gene_name: NR6A1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 56 percent done.
NRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
Cons ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
NRD1   10000 perm   2 sec   (5328 perm/sec)   p_kst 1.530000e-01   p_cons 8.372000e-01   p_joint 2.784000e-01

Outputting figure to mutsig2_images.part000000000117/NRD1.3_3792_10000_0.153_0.8372_0.2784.png
                gene_name: NRD1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
NSDHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
NSDHL   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.713000e-01   p_cons 5.237000e-01   p_joint 6.864000e-01

Outputting figure to mutsig2_images.part000000000117/NSDHL.3_1150_10000_0.5713_0.5237_0.6864.png
                gene_name: NSDHL
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 59 percent done.
NSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
Cons ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
KS ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
NSF   10000 perm   2 sec   (5743 perm/sec)   p_kst 9.000000e-03   p_cons 8.640000e-02   p_joint 2.090000e-02

Joint ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
Cons ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
KS ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
NSF   20000 perm   4 sec   (5054 perm/sec)   p_kst 9.800000e-03   p_cons 8.470000e-02   p_joint 6.050000e-03

Joint ci ratio: 1.823706e-01	ci left: 1.378230e-02	ci right 1.657941e-02	k: 454	n:30000
Cons ci ratio: 7.506126e-02	ci left: 8.019682e-02	ci right 8.648415e-02	k: 2499	n:30000
KS ci ratio: 2.294711e-01	ci left: 8.527638e-03	ci right 1.076886e-02	k: 288	n:30000
NSF   30000 perm   6 sec   (4870 perm/sec)   p_kst 9.600000e-03   p_cons 8.330000e-02   p_joint 1.513333e-02

Joint ci ratio: 2.778885e-01	ci left: 4.262604e-03	ci right 5.660752e-03	k: 197	n:40000
Cons ci ratio: 6.495559e-02	ci left: 8.073293e-02	ci right 8.617772e-02	k: 3337	n:40000
KS ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
NSF   40000 perm   8 sec   (4742 perm/sec)   p_kst 9.600000e-03   p_cons 8.342500e-02   p_joint 4.925000e-03

Joint ci ratio: 3.206569e-01	ci left: 2.502884e-03	ci right 3.476241e-03	k: 148	n:50000
Cons ci ratio: 5.789780e-02	ci left: 8.154336e-02	ci right 8.642507e-02	k: 4198	n:50000
KS ci ratio: 1.760346e-01	ci left: 8.955101e-03	ci right 1.070251e-02	k: 490	n:50000
NSF   50000 perm   11 sec   (4629 perm/sec)   p_kst 9.800000e-03   p_cons 8.396000e-02   p_joint 2.960000e-03

Joint ci ratio: 2.993399e-01	ci left: 2.423896e-03	ci right 3.291968e-03	k: 170	n:60000
Cons ci ratio: 5.289226e-02	ci left: 8.164411e-02	ci right 8.609624e-02	k: 5031	n:60000
KS ci ratio: 1.603129e-01	ci left: 9.075238e-03	ci right 1.067271e-02	k: 591	n:60000
NSF   60000 perm   13 sec   (4535 perm/sec)   p_kst 9.850000e-03   p_cons 8.385000e-02   p_joint 2.833333e-03

Joint ci ratio: 2.317259e-01	ci left: 3.599760e-03	ci right 4.556355e-03	k: 284	n:70000
Cons ci ratio: 4.899914e-02	ci left: 8.171510e-02	ci right 8.583376e-02	k: 5863	n:70000
KS ci ratio: 1.472061e-01	ci left: 9.289904e-03	ci right 1.077970e-02	k: 701	n:70000
NSF   70000 perm   16 sec   (4447 perm/sec)   p_kst 1.001429e-02   p_cons 8.375714e-02   p_joint 4.057143e-03

Joint ci ratio: 1.167857e-01	ci left: 1.307585e-02	ci right 1.470968e-02	k: 1110	n:80000
Cons ci ratio: 4.587083e-02	ci left: 8.172798e-02	ci right 8.557728e-02	k: 6691	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
NSF   80000 perm   18 sec   (4377 perm/sec)   p_kst 9.787500e-03   p_cons 8.363750e-02   p_joint 1.387500e-02

Joint ci ratio: 1.465327e-01	ci left: 7.310549e-03	ci right 8.477060e-03	k: 709	n:90000
Cons ci ratio: 4.324275e-02	ci left: 8.185458e-02	ci right 8.548341e-02	k: 7529	n:90000
KS ci ratio: 1.314195e-01	ci left: 9.145205e-03	ci right 1.044224e-02	k: 880	n:90000
NSF   90000 perm   21 sec   (4307 perm/sec)   p_kst 9.777778e-03   p_cons 8.365556e-02   p_joint 7.877778e-03

Joint ci ratio: 1.709600e-01	ci left: 4.782772e-03	ci right 5.686292e-03	k: 522	n:100000
Cons ci ratio: 4.092414e-02	ci left: 8.231757e-02	ci right 8.576660e-02	k: 8403	n:100000
KS ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
NSF   100000 perm   24 sec   (4241 perm/sec)   p_kst 9.750000e-03   p_cons 8.403000e-02   p_joint 5.220000e-03

Joint ci ratio: 1.624796e-01	ci left: 4.835844e-03	ci right 5.699648e-03	k: 578	n:110000
Cons ci ratio: 3.906904e-02	ci left: 8.220503e-02	ci right 8.548968e-02	k: 9222	n:110000
KS ci ratio: 1.190846e-01	ci left: 9.173331e-03	ci right 1.034364e-02	k: 1072	n:110000
NSF   110000 perm   26 sec   (4174 perm/sec)   p_kst 9.745455e-03   p_cons 8.383636e-02   p_joint 5.254545e-03

Joint ci ratio: 1.470959e-01	ci left: 5.450413e-03	ci right 6.323726e-03	k: 705	n:120000
Cons ci ratio: 3.735403e-02	ci left: 8.248603e-02	ci right 8.563410e-02	k: 10086	n:120000
KS ci ratio: 1.141897e-01	ci left: 9.169369e-03	ci right 1.028785e-02	k: 1166	n:120000
NSF   120000 perm   29 sec   (4113 perm/sec)   p_kst 9.716667e-03   p_cons 8.405000e-02   p_joint 5.875000e-03

Joint ci ratio: 1.422480e-01	ci left: 5.394420e-03	ci right 6.227856e-03	k: 754	n:130000
Cons ci ratio: 3.589144e-02	ci left: 8.253572e-02	ci right 8.555979e-02	k: 10925	n:130000
KS ci ratio: 1.093285e-01	ci left: 9.256653e-03	ci right 1.033461e-02	k: 1272	n:130000
NSF   130000 perm   32 sec   (4052 perm/sec)   p_kst 9.784615e-03   p_cons 8.403846e-02   p_joint 5.800000e-03

Joint ci ratio: 1.399665e-01	ci left: 5.181331e-03	ci right 5.967931e-03	k: 779	n:140000
Cons ci ratio: 3.463322e-02	ci left: 8.238196e-02	ci right 8.529245e-02	k: 11736	n:140000
KS ci ratio: 1.067331e-01	ci left: 9.033248e-03	ci right 1.005865e-02	k: 1335	n:140000
NSF   140000 perm   35 sec   (3995 perm/sec)   p_kst 9.535714e-03   p_cons 8.382857e-02   p_joint 5.564286e-03

Joint ci ratio: 1.231755e-01	ci left: 6.293386e-03	ci right 7.125853e-03	k: 1005	n:150000
Cons ci ratio: 3.347102e-02	ci left: 8.237603e-02	ci right 8.518675e-02	k: 12566	n:150000
KS ci ratio: 1.024095e-01	ci left: 9.177685e-03	ci right 1.017474e-02	k: 1450	n:150000
NSF   150000 perm   38 sec   (3941 perm/sec)   p_kst 9.666667e-03   p_cons 8.377333e-02   p_joint 6.700000e-03

Joint ci ratio: 1.258078e-01	ci left: 5.651660e-03	ci right 6.416405e-03	k: 964	n:160000
Cons ci ratio: 3.230937e-02	ci left: 8.288720e-02	ci right 8.561539e-02	k: 13479	n:160000
KS ci ratio: 9.905208e-02	ci left: 9.213343e-03	ci right 1.017955e-02	k: 1550	n:160000
NSF   160000 perm   41 sec   (3888 perm/sec)   p_kst 9.687500e-03   p_cons 8.424375e-02   p_joint 6.025000e-03

Joint ci ratio: 1.245389e-01	ci left: 5.433134e-03	ci right 6.160346e-03	k: 984	n:170000
Cons ci ratio: 3.138120e-02	ci left: 8.274981e-02	ci right 8.539381e-02	k: 14291	n:170000
KS ci ratio: 9.615174e-02	ci left: 9.216566e-03	ci right 1.015321e-02	k: 1645	n:170000
NSF   170000 perm   44 sec   (3834 perm/sec)   p_kst 9.676471e-03   p_cons 8.406471e-02   p_joint 5.788235e-03

Joint ci ratio: 1.202750e-01	ci left: 5.513676e-03	ci right 6.224603e-03	k: 1055	n:180000
Cons ci ratio: 3.050002e-02	ci left: 8.277214e-02	ci right 8.534128e-02	k: 15129	n:180000
KS ci ratio: 9.351924e-02	ci left: 9.214370e-03	ci right 1.012375e-02	k: 1739	n:180000
NSF   180000 perm   48 sec   (3786 perm/sec)   p_kst 9.661111e-03   p_cons 8.405000e-02   p_joint 5.861111e-03

Joint ci ratio: 1.254117e-01	ci left: 4.794844e-03	ci right 5.441450e-03	k: 971	n:190000
Cons ci ratio: 2.964963e-02	ci left: 8.299693e-02	ci right 8.549999e-02	k: 16006	n:190000
KS ci ratio: 9.099161e-02	ci left: 9.233296e-03	ci right 1.011860e-02	k: 1837	n:190000
NSF   190000 perm   51 sec   (3739 perm/sec)   p_kst 9.668421e-03   p_cons 8.424211e-02   p_joint 5.110526e-03

Joint ci ratio: 6.395993e-02	ci left: 1.784502e-02	ci right 1.902899e-02	k: 3686	n:200000
Cons ci ratio: 2.696556e-02	ci left: 9.427494e-02	ci right 9.685680e-02	k: 19112	n:200000
KS ci ratio: 8.840519e-02	ci left: 9.304421e-03	ci right 1.016988e-02	k: 1946	n:200000
NSF   200000 perm   54 sec   (3692 perm/sec)   p_kst 9.730000e-03   p_cons 9.556000e-02   p_joint 1.843000e-02

Outputting figure to mutsig2_images.part000000000117/NSF.3_2319_200000_0.00973_0.09556_0.01843.png
                gene_name: NSF
               theta_stop: 0.088 
                    nperm: 200000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 61 percent done.
NR1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
KS ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
NR1D2   10000 perm   2 sec   (6545 perm/sec)   p_kst 1.890000e-02   p_cons 1.533000e-01   p_joint 2.970000e-02

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 6.489173e-02	ci left: 1.492698e-01	ci right 1.593309e-01	k: 3085	n:20000
KS ci ratio: 1.965473e-01	ci left: 1.758116e-02	ci right 2.146030e-02	k: 389	n:20000
NR1D2   20000 perm   3 sec   (5954 perm/sec)   p_kst 1.945000e-02   p_cons 1.542500e-01   p_joint 1

Joint ci ratio: 2.422942e-03	ci left: 9.874387e-01	ci right 9.898652e-01	k: 29661	n:30000
Cons ci ratio: 5.647627e-02	ci left: 1.344450e-01	ci right 1.422918e-01	k: 4150	n:30000
KS ci ratio: 1.559217e-01	ci left: 1.902257e-02	ci right 2.227119e-02	k: 618	n:30000
NR1D2   30000 perm   5 sec   (5699 perm/sec)   p_kst 2.060000e-02   p_cons 1.383333e-01   p_joint 9.887000e-01

Joint ci ratio: 2.113924e-03	ci left: 9.874325e-01	ci right 9.895456e-01	k: 39541	n:40000
Cons ci ratio: 4.861816e-02	ci left: 1.363906e-01	ci right 1.432118e-01	k: 5591	n:40000
KS ci ratio: 1.330170e-01	ci left: 1.983485e-02	ci right 2.268524e-02	k: 849	n:40000
NR1D2   40000 perm   7 sec   (5504 perm/sec)   p_kst 2.122500e-02   p_cons 1.397750e-01   p_joint 9.885250e-01

Joint ci ratio: 2.634068e-03	ci left: 9.766145e-01	ci right 9.792096e-01	k: 48897	n:50000
Cons ci ratio: 4.340250e-02	ci left: 1.372073e-01	ci right 1.433145e-01	k: 7012	n:50000
KS ci ratio: 1.184910e-01	ci left: 2.014940e-02	ci right 2.270659e-02	k: 1070	n:50000
NR1D2   50000 perm   9 sec   (5352 perm/sec)   p_kst 2.140000e-02   p_cons 1.402400e-01   p_joint 9.779400e-01

Joint ci ratio: 1.743676e-03	ci left: 9.873899e-01	ci right 9.891290e-01	k: 59297	n:60000
Cons ci ratio: 3.964449e-02	ci left: 1.373319e-01	ci right 1.429030e-01	k: 8406	n:60000
KS ci ratio: 1.090461e-01	ci left: 1.993247e-02	ci right 2.224751e-02	k: 1264	n:60000
NR1D2   60000 perm   12 sec   (5217 perm/sec)   p_kst 2.106667e-02   p_cons 1.401000e-01   p_joint 9.882833e-01

Joint ci ratio: 6.430201e-02	ci left: 4.879089e-02	ci right 5.204651e-02	k: 3528	n:70000
Cons ci ratio: 3.659133e-02	ci left: 1.382737e-01	ci right 1.434418e-01	k: 9859	n:70000
KS ci ratio: 1.012320e-01	ci left: 1.990877e-02	ci right 2.204548e-02	k: 1467	n:70000
NR1D2   70000 perm   14 sec   (5099 perm/sec)   p_kst 2.095714e-02   p_cons 1.408429e-01   p_joint 5.040000e-02

Joint ci ratio: 6.014234e-02	ci left: 4.890643e-02	ci right 5.195127e-02	k: 4033	n:80000
Cons ci ratio: 3.438374e-02	ci left: 1.373542e-01	ci right 1.421720e-01	k: 11180	n:80000
KS ci ratio: 9.474339e-02	ci left: 1.995652e-02	ci right 2.195344e-02	k: 1675	n:80000
NR1D2   80000 perm   16 sec   (4991 perm/sec)   p_kst 2.093750e-02   p_cons 1.397500e-01   p_joint 5.041250e-02

Outputting figure to mutsig2_images.part000000000117/NR1D2.2_1772_80000_0.020938_0.13975_0.050412.png
                gene_name: NR1D2
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 63 percent done.
NR1I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
KS ci ratio: 2.030254e-02	ci left: 7.803626e-01	ci right 7.964690e-01	k: 7885	n:10000
NR1I2   10000 perm   1 sec   (6699 perm/sec)   p_kst 7.885000e-01   p_cons 3.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR1I2.2_1458_10000_0.7885_0.3425_1.png
                gene_name: NR1I2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
NR2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
KS ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
NR2C1   10000 perm   2 sec   (6478 perm/sec)   p_kst 9.568000e-01   p_cons 2.049000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR2C1.2_1942_10000_0.9568_0.2049_1.png
                gene_name: NR2C1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
NR2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
Cons ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
KS ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
NR2C2   10000 perm   2 sec   (6508 perm/sec)   p_kst 6.895000e-01   p_cons 4.590000e-01   p_joint 9.125000e-01

Outputting figure to mutsig2_images.part000000000117/NR2C2.2_1904_10000_0.6895_0.459_0.9125.png
                gene_name: NR2C2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 69 percent done.
NR2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
NR2F2   10000 perm   1 sec   (6755 perm/sec)   p_kst 2.772000e-01   p_cons 1.681000e-01   p_joint 1.629000e-01

Outputting figure to mutsig2_images.part000000000117/NR2F2.2_1304_10000_0.2772_0.1681_0.1629.png
                gene_name: NR2F2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
NR4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
NR4A1   10000 perm   1 sec   (6733 perm/sec)   p_kst 6.230000e-01   p_cons 9.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR4A1.2_1821_10000_0.623_0.9756_1.png
                gene_name: NR4A1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
NR4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
NR4A3   10000 perm   2 sec   (6384 perm/sec)   p_kst 8.120000e-01   p_cons 1.432000e-01   p_joint 6.266000e-01

Outputting figure to mutsig2_images.part000000000117/NR4A3.2_2020_10000_0.812_0.1432_0.6266.png
                gene_name: NR4A3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 74 percent done.
NR5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KS ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
NR5A1   10000 perm   1 sec   (6705 perm/sec)   p_kst 6.512000e-01   p_cons 3.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR5A1.2_1410_10000_0.6512_0.3028_1.png
                gene_name: NR5A1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
NRBP1   10000 perm   2 sec   (6586 perm/sec)   p_kst 5.803000e-01   p_cons 6.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRBP1.2_1676_10000_0.5803_0.6883_1.png
                gene_name: NRBP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
NRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
Cons ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
NRG2   10000 perm   2 sec   (6127 perm/sec)   p_kst 1.593000e-01   p_cons 1.153000e-01   p_joint 9.640000e-02

Joint ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
Cons ci ratio: 7.583497e-02	ci left: 1.133630e-01	ci right 1.223484e-01	k: 2356	n:20000
KS ci ratio: 6.446006e-02	ci left: 1.509964e-01	ci right 1.611038e-01	k: 3120	n:20000
NRG2   20000 perm   4 sec   (5441 perm/sec)   p_kst 1.560000e-01   p_cons 1.178000e-01   p_joint 9.530000e-02

Outputting figure to mutsig2_images.part000000000117/NRG2.2_2684_20000_0.156_0.1178_0.0953.png
                gene_name: NRG2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 80 percent done.
NRM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
Cons ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
KS ci ratio: 2.408115e-02	ci left: 7.171434e-01	ci right 7.347248e-01	k: 7260	n:10000
NRM   10000 perm   1 sec   (7071 perm/sec)   p_kst 7.260000e-01   p_cons 7.382000e-01   p_joint 7.581000e-01

Outputting figure to mutsig2_images.part000000000117/NRM.2_805_10000_0.726_0.7382_0.7581.png
                gene_name: NRM
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 81 percent done.
NRSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792668e-02	ci left: 6.539410e-01	ci right 6.725638e-01	k: 6633	n:10000
Cons ci ratio: 2.289119e-02	ci left: 7.370442e-01	ci right 7.542125e-01	k: 7457	n:10000
KS ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
NRSN1   10000 perm   1 sec   (7147 perm/sec)   p_kst 5.351000e-01   p_cons 7.457000e-01   p_joint 6.633000e-01

Outputting figure to mutsig2_images.part000000000117/NRSN1.2_596_10000_0.5351_0.7457_0.6633.png
                gene_name: NRSN1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 83 percent done.
NRSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
NRSN2   10000 perm   1 sec   (7121 perm/sec)   p_kst 4.459000e-01   p_cons 1.169000e-01   p_joint 1

Joint ci ratio: 2.738044e-02	ci left: 4.991455e-01	ci right 5.130527e-01	k: 10122	n:20000
Cons ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
KS ci ratio: 3.051795e-02	ci left: 4.450849e-01	ci right 4.589291e-01	k: 9040	n:20000
NRSN2   20000 perm   3 sec   (6301 perm/sec)   p_kst 4.520000e-01   p_cons 1.142500e-01   p_joint 5.061000e-01

Outputting figure to mutsig2_images.part000000000117/NRSN2.2_623_20000_0.452_0.11425_0.5061.png
                gene_name: NRSN2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 85 percent done.
NSMAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
NSMAF   10000 perm   2 sec   (6228 perm/sec)   p_kst 1.337000e-01   p_cons 1.232000e-01   p_joint 2.220000e-01

Joint ci ratio: 5.112789e-02	ci left: 2.213086e-01	ci right 2.329708e-01	k: 4542	n:20000
Cons ci ratio: 7.441060e-02	ci left: 1.172975e-01	ci right 1.264127e-01	k: 2436	n:20000
KS ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
NSMAF   20000 perm   4 sec   (5563 perm/sec)   p_kst 1.311000e-01   p_cons 1.218000e-01   p_joint 2.271000e-01

Outputting figure to mutsig2_images.part000000000117/NSMAF.2_3034_20000_0.1311_0.1218_0.2271.png
                gene_name: NSMAF
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 87 percent done.
NSMCE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
Cons ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
KS ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
NSMCE4A   10000 perm   1 sec   (7143 perm/sec)   p_kst 1.377000e-01   p_cons 1.548000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000117/NSMCE4A.2_1198_10000_0.1377_0.1548_0.3431.png
                gene_name: NSMCE4A
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 89 percent done.
NSUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
NSUN3   10000 perm   1 sec   (6925 perm/sec)   p_kst 7.478000e-01   p_cons 6.290000e-02   p_joint 4.169000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.052128e-01	ci left: 6.147550e-02	ci right 6.835165e-02	k: 1297	n:20000
KS ci ratio: 1.634245e-02	ci left: 7.359267e-01	ci right 7.481029e-01	k: 14841	n:20000
NSUN3   20000 perm   3 sec   (6125 perm/sec)   p_kst 7.420500e-01   p_cons 6.485000e-02   p_joint 1

Joint ci ratio: 2.676054e-02	ci left: 4.113789e-01	ci right 4.225705e-01	k: 12509	n:30000
Cons ci ratio: 8.638190e-02	ci left: 6.145202e-02	ci right 6.703274e-02	k: 1926	n:30000
KS ci ratio: 1.347084e-02	ci left: 7.333870e-01	ci right 7.433668e-01	k: 22152	n:30000
NSUN3   30000 perm   5 sec   (5818 perm/sec)   p_kst 7.384000e-01   p_cons 6.420000e-02   p_joint 4.169667e-01

Outputting figure to mutsig2_images.part000000000117/NSUN3.2_1047_30000_0.7384_0.0642_0.41697.png
                gene_name: NSUN3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 91 percent done.
NSUN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
Cons ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
KS ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
NSUN6   10000 perm   1 sec   (6717 perm/sec)   p_kst 3.699000e-01   p_cons 8.913000e-01   p_joint 6.402000e-01

Outputting figure to mutsig2_images.part000000000117/NSUN6.2_1454_10000_0.3699_0.8913_0.6402.png
                gene_name: NSUN6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 93 percent done.
NT5C1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
KS ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
NT5C1A   10000 perm   1 sec   (6879 perm/sec)   p_kst 4.573000e-01   p_cons 9.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NT5C1A.2_1131_10000_0.4573_0.9819_1.png
                gene_name: NT5C1A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
NT5C1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
Cons ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
KS ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
NT5C1B   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.933000e-01   p_cons 5.718000e-01   p_joint 9.599000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C1B.2_1873_10000_0.5933_0.5718_0.9599.png
                gene_name: NT5C1B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 96 percent done.
NT5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
Cons ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
KS ci ratio: 1.764158e-02	ci left: 8.241191e-01	ci right 8.388872e-01	k: 8316	n:10000
NT5E   10000 perm   2 sec   (6530 perm/sec)   p_kst 8.316000e-01   p_cons 2.684000e-01   p_joint 8.836000e-01

Outputting figure to mutsig2_images.part000000000117/NT5E.2_1761_10000_0.8316_0.2684_0.8836.png
                gene_name: NT5E
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 98 percent done.
NTF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
NTF4   10000 perm   1 sec   (7530 perm/sec)   p_kst 2.090000e-02   p_cons 6.704000e-01   p_joint 7.570000e-02

Joint ci ratio: 7.439322e-02	ci left: 1.173467e-01	ci right 1.264635e-01	k: 2437	n:20000
Cons ci ratio: 1.944587e-02	ci left: 6.635847e-01	ci right 6.766658e-01	k: 13403	n:20000
KS ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
NTF4   20000 perm   3 sec   (6616 perm/sec)   p_kst 2.095000e-02   p_cons 6.701500e-01   p_joint 1.218500e-01

Joint ci ratio: 3.649408e-02	ci left: 2.726702e-01	ci right 2.828395e-01	k: 8332	n:30000
Cons ci ratio: 1.596814e-02	ci left: 6.622702e-01	ci right 6.729640e-01	k: 20029	n:30000
KS ci ratio: 1.531652e-01	ci left: 1.972808e-02	ci right 2.303218e-02	k: 640	n:30000
NTF4   30000 perm   5 sec   (6264 perm/sec)   p_kst 2.133333e-02   p_cons 6.676333e-01   p_joint 2.777333e-01

Joint ci ratio: 3.294414e-02	ci left: 2.570989e-01	ci right 2.657357e-01	k: 10456	n:40000
Cons ci ratio: 1.382838e-02	ci left: 6.630092e-01	ci right 6.722665e-01	k: 26706	n:40000
KS ci ratio: 1.298525e-01	ci left: 2.082683e-02	ci right 2.374309e-02	k: 890	n:40000
NTF4   40000 perm   7 sec   (6035 perm/sec)   p_kst 2.225000e-02   p_cons 6.676500e-01   p_joint 2.614000e-01

Joint ci ratio: 2.941474e-02	ci left: 2.582293e-01	ci right 2.659584e-01	k: 13104	n:50000
Cons ci ratio: 1.239446e-02	ci left: 6.625686e-01	ci right 6.708520e-01	k: 33336	n:50000
KS ci ratio: 1.155484e-01	ci left: 2.119844e-02	ci right 2.381741e-02	k: 1124	n:50000
NTF4   50000 perm   9 sec   (5830 perm/sec)   p_kst 2.248000e-02   p_cons 6.667200e-01   p_joint 2.620800e-01

Joint ci ratio: 2.682298e-02	ci left: 2.589826e-01	ci right 2.660404e-01	k: 15750	n:60000
Cons ci ratio: 1.134861e-02	ci left: 6.615915e-01	ci right 6.691592e-01	k: 39923	n:60000
KS ci ratio: 1.057618e-01	ci left: 2.119827e-02	ci right 2.358157e-02	k: 1342	n:60000
NTF4   60000 perm   11 sec   (5649 perm/sec)   p_kst 2.236667e-02   p_cons 6.653833e-01   p_joint 2.625000e-01

Joint ci ratio: 2.496419e-02	ci left: 2.572230e-01	ci right 2.637398e-01	k: 18233	n:70000
Cons ci ratio: 1.053675e-02	ci left: 6.606016e-01	ci right 6.676133e-01	k: 46488	n:70000
KS ci ratio: 9.858907e-02	ci left: 2.099578e-02	ci right 2.318694e-02	k: 1545	n:70000
NTF4   70000 perm   13 sec   (5501 perm/sec)   p_kst 2.207143e-02   p_cons 6.641143e-01   p_joint 2.604714e-01

Outputting figure to mutsig2_images.part000000000117/NTF4.2_637_70000_0.022071_0.66411_0.26047.png
                gene_name: NTF4
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000117
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 117 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1546>
Subject: Job 4422247: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1546>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000118> was used as the working directory.
Started at Wed Oct 24 18:01:10 2012
Results reported at Wed Oct 24 18:17:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000118.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000118.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 118  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000118.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1114.45 sec.
    Max Memory :      5347 MB
    Max Swap   :      7681 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
118
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 118
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 118: processing genes 10586 - 10675
Calculating significance of each gene.
Using projection method.
10586	NTNG1	1.593202e-04
10587	NTNG2	1.822827e-01
10588	NTRK1	1.105211e-02
10589	NTRK2	1.533983e-01
10590	NTRK3	9.906779e-01
10591	NTS	2.902029e-01
10592	NTSR1	8.618734e-01
10593	NTSR2	7.992957e-01
10594	NUAK1	1.329573e-01
10595	NUAK2	9.766907e-01
10596	NUB1	5.352718e-01
10597	NUBP1	1
10598	NUBP2	3.097098e-01
10599	NUBPL	6.312127e-01
10600	NUCB1	8.502685e-01
10601	NUCB2	1
10602	NUCKS1	6.752612e-01
10603	NUDC	1
10604	NUDCD1	3.047381e-01
10605	NUDCD2	1
10606	NUDCD3	8.499123e-01
10607	NUDT1	3.310931e-01
10608	NUDT10	1
10609	NUDT11	1
10610	NUDT12	6.197846e-01
10611	NUDT13	3.361842e-01
10612	NUDT14	4.851310e-01
10613	NUDT15	2.391575e-01
10614	NUDT16	7.251835e-01
10615	NUDT16L1	7.568692e-01
10616	NUDT17	6.670961e-01
10617	NUDT18	1
10618	NUDT19	1
10619	NUDT2	3.996311e-02
10620	NUDT21	6.029213e-01
10621	NUDT22	8.392879e-01
10622	NUDT3	3.267965e-01
10623	NUDT4	1
10624	NUDT5	3.606086e-01
10625	NUDT6	7.617924e-01
10626	NUDT7	1.052048e-01
10627	NUDT8	3.422732e-01
10628	NUDT9	6.381506e-01
10629	NUF2	6.358671e-01
10630	NUFIP1	5.968800e-01
10631	NUFIP2	1
10632	NUMA1	9.991253e-01
10633	NUMB	8.504671e-01
10634	NUMBL	6.582424e-01
10635	NUP107	8.382509e-01
10636	NUP133	9.980476e-01
10637	NUP153	9.787696e-01
10638	NUP155	9.986670e-01
10639	NUP160	9.689874e-01
10640	NUP188	1
10641	NUP205	9.504233e-01
10642	NUP210	9.940232e-01
10643	NUP210L	9.999848e-01
10644	NUP214	9.996197e-01
10645	NUP35	6.288066e-01
10646	NUP37	5.526912e-01
10647	NUP43	3.852523e-02
10648	NUP50	5.886328e-01
10649	NUP54	8.051596e-01
10650	NUP62	1
10651	NUP62CL	1.591827e-01
10652	NUP85	6.888245e-01
10653	NUP88	4.900467e-01
10654	NUP93	6.694270e-01
10655	NUP98	9.574126e-01
10656	NUPL1	6.696401e-01
10657	NUPL2	1.736941e-01
10658	NUPR1	2.500944e-01
10659	NUS1	1
10660	NUSAP1	8.888329e-01
10661	NUTF2	2.398605e-01
10662	NVL	7.783503e-01
10663	NWD1	1
10664	NXF1	5.140126e-01
10665	NXF3	9.117465e-01
10666	NXF5	6.053968e-03
10667	NXN	1
10668	NXNL1	1
10669	NXNL2	4.155243e-01
10670	NXPH1	1.691935e-01
10671	NXPH2	1.653575e-02
10672	NXPH3	4.060894e-01
10673	NXPH4	6.395581e-01
10674	NXT1	5.184571e-01
10675	NXT2	5.568181e-01
Done

Running MutSig 2:
Scatter job 118: processing genes 10586 - 10675
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NUP214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
KS ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
NUP214   10000 perm   3 sec   (2888 perm/sec)   p_kst 8.470000e-01   p_cons 7.249000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUP214.18_6417_10000_0.847_0.7249_1.png
                gene_name: NUP214
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
NTRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
Cons ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
NTRK3   10000 perm   2 sec   (4094 perm/sec)   p_kst 1.030000e-02   p_cons 3.414000e-01   p_joint 2.780000e-02

Joint ci ratio: 2.309462e-01	ci left: 1.255904e-02	ci right 1.588439e-02	k: 283	n:20000
Cons ci ratio: 3.856339e-02	ci left: 3.340306e-01	ci right 3.472158e-01	k: 6812	n:20000
KS ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
NTRK3   20000 perm   5 sec   (3677 perm/sec)   p_kst 9.450000e-03   p_cons 3.406000e-01   p_joint 1.415000e-02

Joint ci ratio: 1.903900e-01	ci left: 1.260575e-02	ci right 1.528959e-02	k: 417	n:30000
Cons ci ratio: 3.143903e-02	ci left: 3.359335e-01	ci right 3.466972e-01	k: 10239	n:30000
KS ci ratio: 2.267148e-01	ci left: 8.747748e-03	ci right 1.101535e-02	k: 295	n:30000
NTRK3   30000 perm   8 sec   (3581 perm/sec)   p_kst 9.833333e-03   p_cons 3.413000e-01   p_joint 1.390000e-02

Joint ci ratio: 1.701186e-01	ci left: 1.198474e-02	ci right 1.423677e-02	k: 523	n:40000
Cons ci ratio: 2.724568e-02	ci left: 3.363536e-01	ci right 3.456695e-01	k: 13640	n:40000
KS ci ratio: 1.898110e-01	ci left: 9.548085e-03	ci right 1.157391e-02	k: 421	n:40000
NTRK3   40000 perm   11 sec   (3501 perm/sec)   p_kst 1.052500e-02   p_cons 3.410000e-01   p_joint 1.307500e-02

Joint ci ratio: 1.420592e-01	ci left: 1.393349e-02	ci right 1.608335e-02	k: 749	n:50000
Cons ci ratio: 2.441733e-02	ci left: 3.359669e-01	ci right 3.442917e-01	k: 17006	n:50000
KS ci ratio: 1.723502e-01	ci left: 9.356953e-03	ci right 1.114060e-02	k: 511	n:50000
NTRK3   50000 perm   15 sec   (3441 perm/sec)   p_kst 1.022000e-02   p_cons 3.401200e-01   p_joint 1.498000e-02

Joint ci ratio: 1.181468e-01	ci left: 1.695122e-02	ci right 1.909576e-02	k: 1080	n:60000
Cons ci ratio: 2.086524e-02	ci left: 3.665007e-01	ci right 3.742452e-01	k: 22222	n:60000
KS ci ratio: 1.575152e-01	ci left: 9.411444e-03	ci right 1.103645e-02	k: 612	n:60000
NTRK3   60000 perm   18 sec   (3389 perm/sec)   p_kst 1.020000e-02   p_cons 3.703667e-01   p_joint 1.800000e-02

Joint ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
Cons ci ratio: 1.935054e-02	ci left: 3.659940e-01	ci right 3.731597e-01	k: 25870	n:70000
KS ci ratio: 1.462619e-01	ci left: 9.413798e-03	ci right 1.091294e-02	k: 710	n:70000
NTRK3   70000 perm   21 sec   (3342 perm/sec)   p_kst 1.014286e-02   p_cons 3.695714e-01   p_joint 1.617143e-02

Joint ci ratio: 1.273079e-01	ci left: 1.096635e-02	ci right 1.246937e-02	k: 936	n:80000
Cons ci ratio: 1.809051e-02	ci left: 3.664907e-01	ci right 3.731937e-01	k: 29587	n:80000
KS ci ratio: 1.394913e-01	ci left: 9.092750e-03	ci right 1.046815e-02	k: 781	n:80000
NTRK3   80000 perm   24 sec   (3296 perm/sec)   p_kst 9.762500e-03   p_cons 3.698375e-01   p_joint 1.170000e-02

Joint ci ratio: 1.055286e-01	ci left: 1.430255e-02	ci right 1.590670e-02	k: 1358	n:90000
Cons ci ratio: 1.701835e-02	ci left: 3.677095e-01	ci right 3.740321e-01	k: 33378	n:90000
KS ci ratio: 1.308953e-01	ci left: 9.220454e-03	ci right 1.052254e-02	k: 887	n:90000
NTRK3   90000 perm   28 sec   (3250 perm/sec)   p_kst 9.855556e-03   p_cons 3.708667e-01   p_joint 1.508889e-02

Joint ci ratio: 1.111736e-01	ci left: 1.159685e-02	ci right 1.297165e-02	k: 1227	n:100000
Cons ci ratio: 1.615775e-02	ci left: 3.675056e-01	ci right 3.735020e-01	k: 37050	n:100000
KS ci ratio: 1.247327e-01	ci left: 9.169626e-03	ci right 1.039906e-02	k: 977	n:100000
NTRK3   100000 perm   31 sec   (3200 perm/sec)   p_kst 9.770000e-03   p_cons 3.705000e-01   p_joint 1.227000e-02

Joint ci ratio: 8.855948e-02	ci left: 1.672442e-02	ci right 1.828299e-02	k: 1924	n:110000
Cons ci ratio: 1.538934e-02	ci left: 3.681442e-01	ci right 3.738626e-01	k: 40810	n:110000
KS ci ratio: 1.195922e-01	ci left: 9.093933e-03	ci right 1.025941e-02	k: 1063	n:110000
NTRK3   110000 perm   35 sec   (3160 perm/sec)   p_kst 9.663636e-03   p_cons 3.710000e-01   p_joint 1.749091e-02

Joint ci ratio: 8.322963e-02	ci left: 1.739403e-02	ci right 1.891271e-02	k: 2177	n:120000
Cons ci ratio: 1.475131e-02	ci left: 3.677250e-01	ci right 3.731980e-01	k: 44455	n:120000
KS ci ratio: 1.188544e-01	ci left: 8.449124e-03	ci right 9.524806e-03	k: 1077	n:120000
NTRK3   120000 perm   38 sec   (3121 perm/sec)   p_kst 8.975000e-03   p_cons 3.704583e-01   p_joint 1.814167e-02

Joint ci ratio: 8.688846e-02	ci left: 1.474514e-02	ci right 1.609199e-02	k: 2003	n:130000
Cons ci ratio: 1.416808e-02	ci left: 3.679814e-01	ci right 3.732398e-01	k: 48179	n:130000
KS ci ratio: 1.143317e-01	ci left: 8.448908e-03	ci right 9.480867e-03	k: 1164	n:130000
NTRK3   130000 perm   42 sec   (3078 perm/sec)   p_kst 8.953846e-03   p_cons 3.706077e-01   p_joint 1.540769e-02

Joint ci ratio: 9.596246e-02	ci left: 1.121301e-02	ci right 1.235020e-02	k: 1648	n:140000
Cons ci ratio: 1.362435e-02	ci left: 3.690464e-01	ci right 3.741160e-01	k: 52021	n:140000
KS ci ratio: 1.070979e-01	ci left: 8.970666e-03	ci right 9.992662e-03	k: 1326	n:140000
NTRK3   140000 perm   46 sec   (3035 perm/sec)   p_kst 9.471429e-03   p_cons 3.715786e-01   p_joint 1.177143e-02

Joint ci ratio: 9.057409e-02	ci left: 1.177439e-02	ci right 1.289791e-02	k: 1849	n:150000
Cons ci ratio: 1.316028e-02	ci left: 3.692070e-01	ci right 3.741046e-01	k: 55748	n:150000
KS ci ratio: 1.030206e-01	ci left: 9.067237e-03	ci right 1.005853e-02	k: 1433	n:150000
NTRK3   150000 perm   50 sec   (2997 perm/sec)   p_kst 9.553333e-03   p_cons 3.716533e-01   p_joint 1.232667e-02

Joint ci ratio: 7.934693e-02	ci left: 1.442846e-02	ci right 1.562671e-02	k: 2403	n:160000
Cons ci ratio: 1.273669e-02	ci left: 3.694936e-01	ci right 3.742361e-01	k: 59498	n:160000
KS ci ratio: 9.940866e-02	ci left: 9.146284e-03	ci right 1.010911e-02	k: 1539	n:160000
NTRK3   160000 perm   54 sec   (2959 perm/sec)   p_kst 9.618750e-03   p_cons 3.718625e-01   p_joint 1.501875e-02

Outputting figure to mutsig2_images.part000000000118/NTRK3.17_2854_160000_0.0096188_0.37186_0.015019.png
                gene_name: NTRK3
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0096 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 4 percent done.
NUP205
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
NUP205   10000 perm   3 sec   (3313 perm/sec)   p_kst 9.100000e-03   p_cons 1.707000e-01   p_joint 2.230000e-02

Joint ci ratio: 2.434210e-01	ci left: 1.124125e-02	ci right 1.440275e-02	k: 255	n:20000
Cons ci ratio: 6.030820e-02	ci left: 1.691144e-01	ci right 1.796805e-01	k: 3487	n:20000
KS ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
NUP205   20000 perm   7 sec   (3062 perm/sec)   p_kst 8.650000e-03   p_cons 1.743500e-01   p_joint 1.275000e-02

Joint ci ratio: 2.558043e-01	ci left: 6.773317e-03	ci right 8.790429e-03	k: 232	n:30000
Cons ci ratio: 4.696830e-02	ci left: 1.839888e-01	ci right 1.928716e-01	k: 5652	n:30000
KS ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
NUP205   30000 perm   10 sec   (2969 perm/sec)   p_kst 8.433333e-03   p_cons 1.884000e-01   p_joint 7.733333e-03

Joint ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
Cons ci ratio: 4.177685e-02	ci left: 1.766178e-01	ci right 1.841787e-01	k: 7215	n:40000
KS ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
NUP205   40000 perm   14 sec   (2915 perm/sec)   p_kst 8.725000e-03   p_cons 1.803750e-01   p_joint 1.327500e-02

Joint ci ratio: 1.374784e-01	ci left: 1.489903e-02	ci right 1.711768e-02	k: 799	n:50000
Cons ci ratio: 3.738158e-02	ci left: 1.768992e-01	ci right 1.836579e-01	k: 9013	n:50000
KS ci ratio: 1.827300e-01	ci left: 8.286262e-03	ci right 9.971469e-03	k: 455	n:50000
NUP205   50000 perm   17 sec   (2869 perm/sec)   p_kst 9.100000e-03   p_cons 1.802600e-01   p_joint 1.598000e-02

Joint ci ratio: 1.537579e-01	ci left: 9.892156e-03	ci right 1.155568e-02	k: 642	n:60000
Cons ci ratio: 3.409345e-02	ci left: 1.774629e-01	ci right 1.836347e-01	k: 10832	n:60000
KS ci ratio: 1.713217e-01	ci left: 7.908593e-03	ci right 9.406182e-03	k: 518	n:60000
NUP205   60000 perm   21 sec   (2828 perm/sec)   p_kst 8.633333e-03   p_cons 1.805333e-01   p_joint 1.070000e-02

Joint ci ratio: 1.464702e-01	ci left: 9.386263e-03	ci right 1.088333e-02	k: 708	n:70000
Cons ci ratio: 3.149526e-02	ci left: 1.783385e-01	ci right 1.840594e-01	k: 12683	n:70000
KS ci ratio: 1.569868e-01	ci left: 8.135142e-03	ci right 9.534600e-03	k: 617	n:70000
NUP205   70000 perm   25 sec   (2785 perm/sec)   p_kst 8.814286e-03   p_cons 1.811857e-01   p_joint 1.011429e-02

Joint ci ratio: 1.365250e-01	ci left: 9.503211e-03	ci right 1.090765e-02	k: 815	n:80000
Cons ci ratio: 2.938935e-02	ci left: 1.792446e-01	ci right 1.846035e-01	k: 14553	n:80000
KS ci ratio: 1.466684e-01	ci left: 8.200565e-03	ci right 9.510425e-03	k: 707	n:80000
NUP205   80000 perm   29 sec   (2737 perm/sec)   p_kst 8.837500e-03   p_cons 1.819125e-01   p_joint 1.018750e-02

Joint ci ratio: 1.239613e-01	ci left: 1.030727e-02	ci right 1.168008e-02	k: 988	n:90000
Cons ci ratio: 2.770778e-02	ci left: 1.794066e-01	ci right 1.844584e-01	k: 16373	n:90000
KS ci ratio: 1.384998e-01	ci left: 8.210879e-03	ci right 9.443314e-03	k: 793	n:90000
NUP205   90000 perm   34 sec   (2665 perm/sec)   p_kst 8.811111e-03   p_cons 1.819222e-01   p_joint 1.097778e-02

Joint ci ratio: 1.026627e-01	ci left: 1.363174e-02	ci right 1.511662e-02	k: 1436	n:100000
Cons ci ratio: 2.630477e-02	ci left: 1.793243e-01	ci right 1.841142e-01	k: 18171	n:100000
KS ci ratio: 1.312592e-01	ci left: 8.259449e-03	ci right 9.429307e-03	k: 883	n:100000
NUP205   100000 perm   38 sec   (2637 perm/sec)   p_kst 8.830000e-03   p_cons 1.817100e-01   p_joint 1.436000e-02

Joint ci ratio: 1.033151e-01	ci left: 1.225033e-02	ci right 1.359371e-02	k: 1420	n:110000
Cons ci ratio: 2.509381e-02	ci left: 1.792804e-01	ci right 1.838455e-01	k: 19971	n:110000
KS ci ratio: 1.253069e-01	ci left: 8.265327e-03	ci right 9.378984e-03	k: 969	n:110000
NUP205   110000 perm   42 sec   (2592 perm/sec)   p_kst 8.809091e-03   p_cons 1.815545e-01   p_joint 1.290909e-02

Joint ci ratio: 1.097637e-01	ci left: 9.939080e-03	ci right 1.110142e-02	k: 1261	n:120000
Cons ci ratio: 2.471045e-02	ci left: 1.712119e-01	ci right 1.755039e-01	k: 20802	n:120000
KS ci ratio: 1.203851e-01	ci left: 8.230801e-03	ci right 9.293143e-03	k: 1050	n:120000
NUP205   120000 perm   47 sec   (2558 perm/sec)   p_kst 8.750000e-03   p_cons 1.733500e-01   p_joint 1.050833e-02

Joint ci ratio: 1.073449e-01	ci left: 9.608486e-03	ci right 1.070584e-02	k: 1319	n:130000
Cons ci ratio: 2.373249e-02	ci left: 1.713990e-01	ci right 1.755232e-01	k: 22549	n:130000
KS ci ratio: 1.149305e-01	ci left: 8.359225e-03	ci right 9.385939e-03	k: 1152	n:130000
NUP205   130000 perm   51 sec   (2529 perm/sec)   p_kst 8.861538e-03   p_cons 1.734538e-01   p_joint 1.014615e-02

Joint ci ratio: 1.100673e-01	ci left: 8.484126e-03	ci right 9.479228e-03	k: 1256	n:140000
Cons ci ratio: 2.284054e-02	ci left: 1.718325e-01	ci right 1.758096e-01	k: 24334	n:140000
KS ci ratio: 1.112340e-01	ci left: 8.303509e-03	ci right 9.288426e-03	k: 1230	n:140000
NUP205   140000 perm   56 sec   (2503 perm/sec)   p_kst 8.785714e-03   p_cons 1.738143e-01   p_joint 8.971429e-03

Joint ci ratio: 1.084171e-01	ci left: 8.171341e-03	ci right 9.114466e-03	k: 1295	n:150000
Cons ci ratio: 2.206925e-02	ci left: 1.718588e-01	ci right 1.757005e-01	k: 26066	n:150000
KS ci ratio: 1.072545e-01	ci left: 8.353014e-03	ci right 9.306117e-03	k: 1323	n:150000
NUP205   150000 perm   61 sec   (2478 perm/sec)   p_kst 8.820000e-03   p_cons 1.737733e-01   p_joint 8.633333e-03

Joint ci ratio: 1.017007e-01	ci left: 8.731877e-03	ci right 9.673537e-03	k: 1471	n:160000
Cons ci ratio: 2.133216e-02	ci left: 1.724066e-01	ci right 1.761302e-01	k: 27882	n:160000
KS ci ratio: 1.036736e-01	ci left: 8.396880e-03	ci right 9.321049e-03	k: 1416	n:160000
NUP205   160000 perm   65 sec   (2453 perm/sec)   p_kst 8.850000e-03   p_cons 1.742625e-01   p_joint 9.193750e-03

Joint ci ratio: 1.000619e-01	ci left: 8.499148e-03	ci right 9.400071e-03	k: 1520	n:170000
Cons ci ratio: 2.069426e-02	ci left: 1.724758e-01	ci right 1.760882e-01	k: 29627	n:170000
KS ci ratio: 1.003284e-01	ci left: 8.453259e-03	ci right 9.351845e-03	k: 1512	n:170000
NUP205   170000 perm   70 sec   (2428 perm/sec)   p_kst 8.894118e-03   p_cons 1.742765e-01   p_joint 8.941176e-03

Joint ci ratio: 9.910596e-02	ci left: 8.189424e-03	ci right 9.048737e-03	k: 1550	n:180000
Cons ci ratio: 2.009640e-02	ci left: 1.727381e-01	ci right 1.762502e-01	k: 31408	n:180000
KS ci ratio: 9.765562e-02	ci left: 8.438743e-03	ci right 9.310518e-03	k: 1596	n:180000
NUP205   180000 perm   75 sec   (2401 perm/sec)   p_kst 8.866667e-03   p_cons 1.744889e-01   p_joint 8.611111e-03

Outputting figure to mutsig2_images.part000000000118/NUP205.16_6211_180000_0.0088667_0.17449_0.0086111.png
                gene_name: NUP205
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0090 

Current progress: 5 percent done.
NTNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
KS ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
NTNG1   10000 perm   2 sec   (4474 perm/sec)   p_kst 3.530000e-02   p_cons 3.224000e-01   p_joint 5.100000e-02

Joint ci ratio: 6.807804e-02	ci left: 1.373376e-01	ci right 1.470666e-01	k: 2843	n:20000
Cons ci ratio: 4.029061e-02	ci left: 3.147301e-01	ci right 3.277219e-01	k: 6424	n:20000
KS ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
NTNG1   20000 perm   5 sec   (4049 perm/sec)   p_kst 3.735000e-02   p_cons 3.212000e-01   p_joint 1.421500e-01

Joint ci ratio: 6.280368e-02	ci left: 1.113121e-01	ci right 1.185627e-01	k: 3447	n:30000
Cons ci ratio: 3.294121e-02	ci left: 3.153529e-01	ci right 3.259485e-01	k: 9619	n:30000
KS ci ratio: 1.147638e-01	ci left: 3.528116e-02	ci right 3.960901e-02	k: 1122	n:30000
NTNG1   30000 perm   8 sec   (3881 perm/sec)   p_kst 3.740000e-02   p_cons 3.206333e-01   p_joint 1.149000e-01

Joint ci ratio: 6.006728e-02	ci left: 9.332726e-02	ci right 9.913151e-02	k: 3848	n:40000
Cons ci ratio: 2.848978e-02	ci left: 3.166496e-01	ci right 3.258264e-01	k: 12849	n:40000
KS ci ratio: 9.960780e-02	ci left: 3.541533e-02	ci right 3.915223e-02	k: 1490	n:40000
NTNG1   40000 perm   11 sec   (3786 perm/sec)   p_kst 3.725000e-02   p_cons 3.212250e-01   p_joint 9.620000e-02

Outputting figure to mutsig2_images.part000000000118/NTNG1.13_1782_40000_0.03725_0.32122_0.0962.png
                gene_name: NTNG1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 7 percent done.
NTRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
KS ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
NTRK1   10000 perm   2 sec   (4159 perm/sec)   p_kst 6.800000e-03   p_cons 1.281000e-01   p_joint 1.500000e-02

Joint ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
Cons ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
KS ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
NTRK1   20000 perm   5 sec   (3832 perm/sec)   p_kst 6.250000e-03   p_cons 1.283500e-01   p_joint 7.600000e-03

Joint ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
Cons ci ratio: 6.202383e-02	ci left: 1.138437e-01	ci right 1.211639e-01	k: 3524	n:30000
KS ci ratio: 2.946082e-01	ci left: 5.003063e-03	ci right 6.761370e-03	k: 175	n:30000
NTRK1   30000 perm   8 sec   (3695 perm/sec)   p_kst 5.833333e-03   p_cons 1.174667e-01   p_joint 4.266667e-03

Joint ci ratio: 2.039596e-01	ci left: 8.216425e-03	ci right 1.010586e-02	k: 365	n:40000
Cons ci ratio: 5.379872e-02	ci left: 1.140138e-01	ci right 1.203419e-01	k: 4686	n:40000
KS ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
NTRK1   40000 perm   11 sec   (3606 perm/sec)   p_kst 5.675000e-03   p_cons 1.171500e-01   p_joint 9.125000e-03

Joint ci ratio: 1.925611e-01	ci left: 7.428193e-03	ci right 9.029691e-03	k: 410	n:50000
Cons ci ratio: 4.622549e-02	ci left: 1.228258e-01	ci right 1.286577e-01	k: 6286	n:50000
KS ci ratio: 2.327711e-01	ci left: 4.983585e-03	ci right 6.314797e-03	k: 281	n:50000
NTRK1   50000 perm   14 sec   (3528 perm/sec)   p_kst 5.620000e-03   p_cons 1.257200e-01   p_joint 8.200000e-03

Joint ci ratio: 1.832759e-01	ci left: 6.872941e-03	ci right 8.275321e-03	k: 453	n:60000
Cons ci ratio: 4.213219e-02	ci left: 1.234206e-01	ci right 1.287490e-01	k: 7564	n:60000
KS ci ratio: 2.178643e-01	ci left: 4.782005e-03	ci right 5.966613e-03	k: 321	n:60000
NTRK1   60000 perm   17 sec   (3458 perm/sec)   p_kst 5.350000e-03   p_cons 1.260667e-01   p_joint 7.550000e-03

Joint ci ratio: 1.299694e-01	ci left: 1.199419e-02	ci right 1.367512e-02	k: 897	n:70000
Cons ci ratio: 3.908502e-02	ci left: 1.231818e-01	ci right 1.281065e-01	k: 8794	n:70000
KS ci ratio: 1.918526e-01	ci left: 5.359683e-03	ci right 6.510422e-03	k: 414	n:70000
NTRK1   70000 perm   21 sec   (3394 perm/sec)   p_kst 5.914286e-03   p_cons 1.256286e-01   p_joint 1.281429e-02

Joint ci ratio: 1.221972e-01	ci left: 1.192340e-02	ci right 1.348724e-02	k: 1015	n:80000
Cons ci ratio: 3.671425e-02	ci left: 1.224304e-01	ci right 1.270218e-01	k: 9977	n:80000
KS ci ratio: 1.787591e-01	ci left: 5.440749e-03	ci right 6.520550e-03	k: 477	n:80000
NTRK1   80000 perm   24 sec   (3334 perm/sec)   p_kst 5.962500e-03   p_cons 1.247125e-01   p_joint 1.268750e-02

Joint ci ratio: 1.238348e-01	ci left: 1.032881e-02	ci right 1.170298e-02	k: 990	n:90000
Cons ci ratio: 3.461851e-02	ci left: 1.225371e-01	ci right 1.268649e-01	k: 11222	n:90000
KS ci ratio: 1.675590e-01	ci left: 5.537820e-03	ci right 6.561077e-03	k: 543	n:90000
NTRK1   90000 perm   27 sec   (3285 perm/sec)   p_kst 6.033333e-03   p_cons 1.246889e-01   p_joint 1.100000e-02

Joint ci ratio: 1.348449e-01	ci left: 7.814638e-03	ci right 8.954153e-03	k: 837	n:100000
Cons ci ratio: 3.345953e-02	ci left: 1.186670e-01	ci right 1.227150e-01	k: 12068	n:100000
KS ci ratio: 1.586235e-01	ci left: 5.588350e-03	ci right 6.560634e-03	k: 606	n:100000
NTRK1   100000 perm   31 sec   (3230 perm/sec)   p_kst 6.060000e-03   p_cons 1.206800e-01   p_joint 8.370000e-03

Joint ci ratio: 1.341726e-01	ci left: 7.183122e-03	ci right 8.224904e-03	k: 846	n:110000
Cons ci ratio: 3.192964e-02	ci left: 1.185817e-01	ci right 1.224384e-01	k: 13255	n:110000
KS ci ratio: 1.499701e-01	ci left: 5.709633e-03	ci right 6.643964e-03	k: 678	n:110000
NTRK1   110000 perm   35 sec   (3179 perm/sec)   p_kst 6.163636e-03   p_cons 1.205000e-01   p_joint 7.690909e-03

Joint ci ratio: 1.343759e-01	ci left: 6.568280e-03	ci right 7.522443e-03	k: 844	n:120000
Cons ci ratio: 3.054281e-02	ci left: 1.188535e-01	ci right 1.225482e-01	k: 14483	n:120000
KS ci ratio: 1.436565e-01	ci left: 5.723498e-03	ci right 6.617287e-03	k: 739	n:120000
NTRK1   120000 perm   38 sec   (3136 perm/sec)   p_kst 6.158333e-03   p_cons 1.206917e-01   p_joint 7.033333e-03

Joint ci ratio: 1.322252e-01	ci left: 6.271165e-03	ci right 7.166436e-03	k: 872	n:130000
Cons ci ratio: 2.932759e-02	ci left: 1.190484e-01	ci right 1.225993e-01	k: 15706	n:130000
KS ci ratio: 1.377329e-01	ci left: 5.765641e-03	ci right 6.625840e-03	k: 804	n:130000
NTRK1   130000 perm   42 sec   (3080 perm/sec)   p_kst 6.184615e-03   p_cons 1.208154e-01   p_joint 6.707692e-03

Joint ci ratio: 1.338872e-01	ci left: 5.678101e-03	ci right 6.499701e-03	k: 851	n:140000
Cons ci ratio: 2.825245e-02	ci left: 1.191753e-01	ci right 1.225976e-01	k: 16923	n:140000
KS ci ratio: 1.327168e-01	ci left: 5.781690e-03	ci right 6.610390e-03	k: 866	n:140000
NTRK1   140000 perm   46 sec   (3029 perm/sec)   p_kst 6.185714e-03   p_cons 1.208786e-01   p_joint 6.078571e-03

Joint ci ratio: 1.418322e-01	ci left: 4.707193e-03	ci right 5.432141e-03	k: 759	n:150000
Cons ci ratio: 2.732606e-02	ci left: 1.189891e-01	ci right 1.222922e-01	k: 18095	n:150000
KS ci ratio: 1.291239e-01	ci left: 5.712199e-03	ci right 6.507074e-03	k: 915	n:150000
NTRK1   150000 perm   50 sec   (2981 perm/sec)   p_kst 6.100000e-03   p_cons 1.206333e-01   p_joint 5.060000e-03

Joint ci ratio: 1.381588e-01	ci left: 4.660261e-03	ci right 5.357861e-03	k: 800	n:160000
Cons ci ratio: 2.644075e-02	ci left: 1.191820e-01	ci right 1.223817e-01	k: 19324	n:160000
KS ci ratio: 1.256768e-01	ci left: 5.663769e-03	ci right 6.429296e-03	k: 966	n:160000
NTRK1   160000 perm   55 sec   (2934 perm/sec)   p_kst 6.037500e-03   p_cons 1.207750e-01   p_joint 5.000000e-03

Joint ci ratio: 1.315002e-01	ci left: 4.857934e-03	ci right 5.547341e-03	k: 883	n:170000
Cons ci ratio: 2.564833e-02	ci left: 1.192544e-01	ci right 1.223586e-01	k: 20536	n:170000
KS ci ratio: 1.233479e-01	ci left: 5.541453e-03	ci right 6.275551e-03	k: 1003	n:170000
NTRK1   170000 perm   59 sec   (2891 perm/sec)   p_kst 5.900000e-03   p_cons 1.208000e-01   p_joint 5.194118e-03

Joint ci ratio: 1.280017e-01	ci left: 4.851434e-03	ci right 5.520210e-03	k: 932	n:180000
Cons ci ratio: 2.490294e-02	ci left: 1.194912e-01	ci right 1.225099e-01	k: 21779	n:180000
KS ci ratio: 1.199896e-01	ci left: 5.540623e-03	ci right 6.253210e-03	k: 1060	n:180000
NTRK1   180000 perm   63 sec   (2849 perm/sec)   p_kst 5.888889e-03   p_cons 1.209944e-01   p_joint 5.177778e-03

Joint ci ratio: 1.127552e-01	ci left: 5.964494e-03	ci right 6.682272e-03	k: 1200	n:190000
Cons ci ratio: 2.426878e-02	ci left: 1.192697e-01	ci right 1.222050e-01	k: 22939	n:190000
KS ci ratio: 1.170495e-01	ci left: 5.524794e-03	ci right 6.216729e-03	k: 1114	n:190000
NTRK1   190000 perm   68 sec   (2808 perm/sec)   p_kst 5.863158e-03   p_cons 1.207316e-01   p_joint 6.315789e-03

Joint ci ratio: 9.940775e-02	ci left: 7.331313e-03	ci right 8.103059e-03	k: 1542	n:200000
Cons ci ratio: 2.290189e-02	ci left: 1.263049e-01	ci right 1.292359e-01	k: 25553	n:200000
KS ci ratio: 1.141681e-01	ci left: 5.525313e-03	ci right 6.199131e-03	k: 1171	n:200000
NTRK1   200000 perm   72 sec   (2765 perm/sec)   p_kst 5.855000e-03   p_cons 1.277650e-01   p_joint 7.710000e-03

Joint ci ratio: 9.897483e-02	ci left: 7.047164e-03	ci right 7.785578e-03	k: 1556	n:210000
Cons ci ratio: 2.234170e-02	ci left: 1.264222e-01	ci right 1.292833e-01	k: 26848	n:210000
KS ci ratio: 1.116268e-01	ci left: 5.512082e-03	ci right 6.168338e-03	k: 1225	n:210000
NTRK1   210000 perm   77 sec   (2726 perm/sec)   p_kst 5.833333e-03   p_cons 1.278476e-01   p_joint 7.409524e-03

Joint ci ratio: 9.742831e-02	ci left: 6.948512e-03	ci right 7.664562e-03	k: 1606	n:220000
Cons ci ratio: 2.180117e-02	ci left: 1.267287e-01	ci right 1.295265e-01	k: 28187	n:220000
KS ci ratio: 1.091193e-01	ci left: 5.513471e-03	ci right 6.154200e-03	k: 1282	n:220000
NTRK1   220000 perm   82 sec   (2689 perm/sec)   p_kst 5.827273e-03   p_cons 1.281227e-01   p_joint 7.300000e-03

Joint ci ratio: 9.609810e-02	ci left: 6.837301e-03	ci right 7.531728e-03	k: 1651	n:230000
Cons ci ratio: 2.130136e-02	ci left: 1.269747e-01	ci right 1.297129e-01	k: 29518	n:230000
KS ci ratio: 1.071766e-01	ci left: 5.472569e-03	ci right 6.096507e-03	k: 1329	n:230000
NTRK1   230000 perm   87 sec   (2655 perm/sec)   p_kst 5.778261e-03   p_cons 1.283391e-01   p_joint 7.178261e-03

Joint ci ratio: 9.628882e-02	ci left: 6.527964e-03	ci right 7.192362e-03	k: 1645	n:240000
Cons ci ratio: 2.084410e-02	ci left: 1.270972e-01	ci right 1.297784e-01	k: 30824	n:240000
KS ci ratio: 1.047995e-01	ci left: 5.491977e-03	ci right 6.103384e-03	k: 1390	n:240000
NTRK1   240000 perm   92 sec   (2622 perm/sec)   p_kst 5.791667e-03   p_cons 1.284333e-01   p_joint 6.854167e-03

Joint ci ratio: 9.408360e-02	ci left: 6.571426e-03	ci right 7.224085e-03	k: 1723	n:250000
Cons ci ratio: 2.041727e-02	ci left: 1.271865e-01	ci right 1.298141e-01	k: 32124	n:250000
KS ci ratio: 1.026451e-01	ci left: 5.502177e-03	ci right 6.101367e-03	k: 1449	n:250000
NTRK1   250000 perm   96 sec   (2592 perm/sec)   p_kst 5.796000e-03   p_cons 1.284960e-01   p_joint 6.892000e-03

Joint ci ratio: 9.360550e-02	ci left: 6.386256e-03	ci right 7.017124e-03	k: 1741	n:260000
Cons ci ratio: 2.000361e-02	ci left: 1.274036e-01	ci right 1.299816e-01	k: 33459	n:260000
KS ci ratio: 1.007526e-01	ci left: 5.496712e-03	ci right 6.083618e-03	k: 1504	n:260000
NTRK1   260000 perm   102 sec   (2561 perm/sec)   p_kst 5.784615e-03   p_cons 1.286885e-01   p_joint 6.696154e-03

Joint ci ratio: 9.477401e-02	ci left: 5.997779e-03	ci right 6.598077e-03	k: 1699	n:270000
Cons ci ratio: 1.963127e-02	ci left: 1.274095e-01	ci right 1.299392e-01	k: 34741	n:270000
KS ci ratio: 9.867525e-02	ci left: 5.524260e-03	ci right 6.101241e-03	k: 1568	n:270000
NTRK1   270000 perm   107 sec   (2529 perm/sec)   p_kst 5.807407e-03   p_cons 1.286704e-01   p_joint 6.292593e-03

Outputting figure to mutsig2_images.part000000000118/NTRK1.12_2589_270000_0.0058074_0.12867_0.0062926.png
                gene_name: NTRK1
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 9 percent done.
NTRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
Cons ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
NTRK2   10000 perm   2 sec   (4332 perm/sec)   p_kst 7.787000e-01   p_cons 4.632000e-01   p_joint 8.460000e-01

Outputting figure to mutsig2_images.part000000000118/NTRK2.9_2664_10000_0.7787_0.4632_0.846.png
                gene_name: NTRK2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 11 percent done.
NUP155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751375e-02	ci left: 5.120544e-01	ci right 5.317328e-01	k: 5219	n:10000
Cons ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
KS ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
NUP155   10000 perm   2 sec   (4494 perm/sec)   p_kst 6.997000e-01   p_cons 2.463000e-01   p_joint 5.219000e-01

Outputting figure to mutsig2_images.part000000000118/NUP155.9_4316_10000_0.6997_0.2463_0.5219.png
                gene_name: NUP155
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 13 percent done.
NUP210L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485289e-02	ci left: 8.678477e-01	ci right 8.809333e-01	k: 8745	n:10000
Cons ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
NUP210L   10000 perm   3 sec   (3486 perm/sec)   p_kst 8.071000e-01   p_cons 4.709000e-01   p_joint 8.745000e-01

Outputting figure to mutsig2_images.part000000000118/NUP210L.9_5827_10000_0.8071_0.4709_0.8745.png
                gene_name: NUP210L
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 15 percent done.
NUDCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
Cons ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
KS ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
NUDCD1   10000 perm   2 sec   (5078 perm/sec)   p_kst 4.778000e-01   p_cons 3.738000e-01   p_joint 5.860000e-01

Outputting figure to mutsig2_images.part000000000118/NUDCD1.8_1827_10000_0.4778_0.3738_0.586.png
                gene_name: NUDCD1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 16 percent done.
NUP188
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
Cons ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
KS ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
NUP188   10000 perm   3 sec   (3929 perm/sec)   p_kst 1.171000e-01   p_cons 3.994000e-01   p_joint 2.183000e-01

Joint ci ratio: 5.713816e-02	ci left: 1.850285e-01	ci right 1.959617e-01	k: 3809	n:20000
Cons ci ratio: 3.445588e-02	ci left: 3.860725e-01	ci right 3.996587e-01	k: 7857	n:20000
KS ci ratio: 7.872215e-02	ci left: 1.059412e-01	ci right 1.146724e-01	k: 2205	n:20000
NUP188   20000 perm   6 sec   (3514 perm/sec)   p_kst 1.102500e-01   p_cons 3.928500e-01   p_joint 1.904500e-01

Outputting figure to mutsig2_images.part000000000118/NUP188.8_5426_20000_0.11025_0.39285_0.19045.png
                gene_name: NUP188
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 18 percent done.
NXF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 1.653637e-01	ci left: 4.878580e-02	ci right 5.767674e-02	k: 531	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
NXF1   10000 perm   2 sec   (4785 perm/sec)   p_kst 5.500000e-03   p_cons 5.310000e-02   p_joint 1.260000e-02

Joint ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
Cons ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
KS ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
NXF1   20000 perm   5 sec   (4201 perm/sec)   p_kst 5.550000e-03   p_cons 5.320000e-02   p_joint 7.400000e-03

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
KS ci ratio: 3.034031e-01	ci left: 4.694616e-03	ci right 6.403287e-03	k: 165	n:30000
NXF1   30000 perm   7 sec   (4014 perm/sec)   p_kst 5.500000e-03   p_cons 5.346667e-02   p_joint 3.200000e-03

Joint ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
Cons ci ratio: 7.787201e-02	ci left: 5.725040e-02	ci right 6.191379e-02	k: 2382	n:40000
KS ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
NXF1   40000 perm   10 sec   (3898 perm/sec)   p_kst 5.800000e-03   p_cons 5.955000e-02   p_joint 5.800000e-03

Joint ci ratio: 2.655262e-01	ci left: 3.764073e-03	ci right 4.934623e-03	k: 216	n:50000
Cons ci ratio: 6.949916e-02	ci left: 5.773723e-02	ci right 6.191406e-02	k: 2990	n:50000
KS ci ratio: 2.327711e-01	ci left: 4.983585e-03	ci right 6.314797e-03	k: 281	n:50000
NXF1   50000 perm   13 sec   (3794 perm/sec)   p_kst 5.620000e-03   p_cons 5.980000e-02   p_joint 4.320000e-03

Joint ci ratio: 2.802582e-01	ci left: 2.794924e-03	ci right 3.720822e-03	k: 194	n:60000
Cons ci ratio: 6.353994e-02	ci left: 5.775152e-02	ci right 6.155787e-02	k: 3578	n:60000
KS ci ratio: 2.142160e-01	ci left: 4.955465e-03	ci right 6.159787e-03	k: 332	n:60000
NXF1   60000 perm   16 sec   (3697 perm/sec)   p_kst 5.533333e-03   p_cons 5.963333e-02   p_joint 3.233333e-03

Joint ci ratio: 2.754100e-01	ci left: 2.488626e-03	ci right 3.296313e-03	k: 201	n:70000
Cons ci ratio: 5.876304e-02	ci left: 5.801232e-02	ci right 6.153857e-02	k: 4183	n:70000
KS ci ratio: 1.992301e-01	ci left: 4.951983e-03	ci right 6.061041e-03	k: 384	n:70000
NXF1   70000 perm   19 sec   (3628 perm/sec)   p_kst 5.485714e-03   p_cons 5.975714e-02   p_joint 2.871429e-03

Joint ci ratio: 2.569856e-01	ci left: 2.527556e-03	ci right 3.284208e-03	k: 231	n:80000
Cons ci ratio: 5.499667e-02	ci left: 5.806793e-02	ci right 6.136409e-02	k: 4776	n:80000
KS ci ratio: 1.883093e-01	ci left: 4.880089e-03	ci right 5.906282e-03	k: 430	n:80000
NXF1   80000 perm   22 sec   (3560 perm/sec)   p_kst 5.375000e-03   p_cons 5.970000e-02   p_joint 2.887500e-03

Joint ci ratio: 2.418243e-01	ci left: 2.559238e-03	ci right 3.273399e-03	k: 261	n:90000
Cons ci ratio: 5.184690e-02	ci left: 5.817171e-02	ci right 6.127896e-02	k: 5374	n:90000
KS ci ratio: 1.805355e-01	ci left: 4.740560e-03	ci right 5.691760e-03	k: 468	n:90000
NXF1   90000 perm   26 sec   (3491 perm/sec)   p_kst 5.200000e-03   p_cons 5.971111e-02   p_joint 2.900000e-03

Joint ci ratio: 2.282816e-01	ci left: 2.604489e-03	ci right 3.284849e-03	k: 293	n:100000
Cons ci ratio: 4.906943e-02	ci left: 5.851608e-02	ci right 6.146951e-02	k: 5998	n:100000
KS ci ratio: 1.685471e-01	ci left: 4.926429e-03	ci right 5.842620e-03	k: 537	n:100000
NXF1   100000 perm   29 sec   (3430 perm/sec)   p_kst 5.370000e-03   p_cons 5.998000e-02   p_joint 2.930000e-03

Joint ci ratio: 1.716617e-01	ci left: 4.313079e-03	ci right 5.131553e-03	k: 518	n:110000
Cons ci ratio: 4.684216e-02	ci left: 5.845079e-02	ci right 6.126338e-02	k: 6583	n:110000
KS ci ratio: 1.591959e-01	ci left: 5.045287e-03	ci right 5.926550e-03	k: 602	n:110000
NXF1   110000 perm   33 sec   (3375 perm/sec)   p_kst 5.472727e-03   p_cons 5.984545e-02   p_joint 4.709091e-03

Joint ci ratio: 1.707075e-01	ci left: 4.001457e-03	ci right 4.756137e-03	k: 524	n:120000
Cons ci ratio: 4.477688e-02	ci left: 5.868753e-02	ci right 6.138378e-02	k: 7203	n:120000
KS ci ratio: 1.538140e-01	ci left: 4.969132e-03	ci right 5.805044e-03	k: 645	n:120000
NXF1   120000 perm   36 sec   (3319 perm/sec)   p_kst 5.375000e-03   p_cons 6.002500e-02   p_joint 4.366667e-03

Joint ci ratio: 1.707364e-01	ci left: 3.693602e-03	ci right 4.390346e-03	k: 524	n:130000
Cons ci ratio: 4.304764e-02	ci left: 5.866932e-02	ci right 6.125804e-02	k: 7794	n:130000
KS ci ratio: 1.479748e-01	ci left: 4.971792e-03	ci right 5.773591e-03	k: 697	n:130000
NXF1   130000 perm   40 sec   (3267 perm/sec)   p_kst 5.361538e-03   p_cons 5.995385e-02   p_joint 4.030769e-03

Joint ci ratio: 1.699507e-01	ci left: 3.463929e-03	ci right 4.114032e-03	k: 529	n:140000
Cons ci ratio: 4.143089e-02	ci left: 5.885350e-02	ci right 6.135048e-02	k: 8413	n:140000
KS ci ratio: 1.444085e-01	ci left: 4.857499e-03	ci right 5.620357e-03	k: 732	n:140000
NXF1   140000 perm   44 sec   (3215 perm/sec)   p_kst 5.228571e-03   p_cons 6.009286e-02   p_joint 3.778571e-03

Joint ci ratio: 1.712744e-01	ci left: 3.181904e-03	ci right 3.784206e-03	k: 521	n:150000
Cons ci ratio: 3.997889e-02	ci left: 5.902789e-02	ci right 6.144247e-02	k: 9034	n:150000
KS ci ratio: 1.395438e-01	ci left: 4.868021e-03	ci right 5.604636e-03	k: 784	n:150000
NXF1   150000 perm   47 sec   (3162 perm/sec)   p_kst 5.226667e-03   p_cons 6.022667e-02   p_joint 3.473333e-03

Joint ci ratio: 1.719553e-01	ci left: 2.959080e-03	ci right 3.521659e-03	k: 517	n:160000
Cons ci ratio: 3.873578e-02	ci left: 5.898983e-02	ci right 6.132614e-02	k: 9624	n:160000
KS ci ratio: 1.356293e-01	ci left: 4.841370e-03	ci right 5.551742e-03	k: 830	n:160000
NXF1   160000 perm   51 sec   (3118 perm/sec)   p_kst 5.187500e-03   p_cons 6.015000e-02   p_joint 3.231250e-03

Joint ci ratio: 1.670307e-01	ci left: 2.959634e-03	ci right 3.504583e-03	k: 548	n:170000
Cons ci ratio: 3.762538e-02	ci left: 5.888731e-02	ci right 6.115125e-02	k: 10202	n:170000
KS ci ratio: 1.306121e-01	ci left: 4.926219e-03	ci right 5.620229e-03	k: 895	n:170000
NXF1   170000 perm   55 sec   (3076 perm/sec)   p_kst 5.264706e-03   p_cons 6.001176e-02   p_joint 3.223529e-03

Joint ci ratio: 1.703452e-01	ci left: 2.683436e-03	ci right 3.188340e-03	k: 527	n:180000
Cons ci ratio: 3.654942e-02	ci left: 5.896779e-02	ci right 6.116863e-02	k: 10811	n:180000
KS ci ratio: 1.273855e-01	ci left: 4.899845e-03	ci right 5.571797e-03	k: 941	n:180000
NXF1   180000 perm   59 sec   (3034 perm/sec)   p_kst 5.227778e-03   p_cons 6.006111e-02   p_joint 2.927778e-03

Joint ci ratio: 1.130397e-01	ci left: 5.933802e-03	ci right 6.649808e-03	k: 1194	n:190000
Cons ci ratio: 3.555086e-02	ci left: 5.907194e-02	ci right 6.121519e-02	k: 11426	n:190000
KS ci ratio: 1.246407e-01	ci left: 4.856036e-03	ci right 5.506571e-03	k: 983	n:190000
NXF1   190000 perm   63 sec   (2995 perm/sec)   p_kst 5.173684e-03   p_cons 6.013684e-02   p_joint 6.284211e-03

Joint ci ratio: 1.113366e-01	ci left: 5.816900e-03	ci right 6.507531e-03	k: 1231	n:200000
Cons ci ratio: 3.462378e-02	ci left: 5.918624e-02	ci right 6.127653e-02	k: 12045	n:200000
KS ci ratio: 1.212959e-01	ci left: 4.879779e-03	ci right 5.514693e-03	k: 1038	n:200000
NXF1   200000 perm   68 sec   (2957 perm/sec)   p_kst 5.190000e-03   p_cons 6.022500e-02   p_joint 6.155000e-03

Joint ci ratio: 1.106327e-01	ci left: 5.613948e-03	ci right 6.275992e-03	k: 1247	n:210000
Cons ci ratio: 3.377557e-02	ci left: 5.925724e-02	ci right 6.129777e-02	k: 12657	n:210000
KS ci ratio: 1.187536e-01	ci left: 4.855257e-03	ci right 5.472809e-03	k: 1083	n:210000
NXF1   210000 perm   72 sec   (2919 perm/sec)   p_kst 5.157143e-03   p_cons 6.027143e-02   p_joint 5.938095e-03

Joint ci ratio: 9.403903e-02	ci left: 7.467691e-03	ci right 8.209000e-03	k: 1723	n:220000
Cons ci ratio: 3.301726e-02	ci left: 5.921862e-02	ci right 6.121116e-02	k: 13246	n:220000
KS ci ratio: 1.161065e-01	ci left: 4.855160e-03	ci right 5.457991e-03	k: 1133	n:220000
NXF1   220000 perm   76 sec   (2882 perm/sec)   p_kst 5.150000e-03   p_cons 6.020909e-02   p_joint 7.831818e-03

Joint ci ratio: 9.707956e-02	ci left: 6.697265e-03	ci right 7.384811e-03	k: 1618	n:230000
Cons ci ratio: 3.223723e-02	ci left: 5.942978e-02	ci right 6.138131e-02	k: 13892	n:230000
KS ci ratio: 1.135325e-01	ci left: 4.863662e-03	ci right 5.453263e-03	k: 1185	n:230000
NXF1   230000 perm   81 sec   (2846 perm/sec)   p_kst 5.152174e-03   p_cons 6.040000e-02   p_joint 7.034783e-03

Joint ci ratio: 8.746427e-02	ci left: 7.936817e-03	ci right 8.666799e-03	k: 1991	n:240000
Cons ci ratio: 3.155274e-02	ci left: 5.947082e-02	ci right 6.138148e-02	k: 14501	n:240000
KS ci ratio: 1.119896e-01	ci left: 4.794621e-03	ci right 5.367432e-03	k: 1218	n:240000
NXF1   240000 perm   85 sec   (2811 perm/sec)   p_kst 5.075000e-03   p_cons 6.042083e-02   p_joint 8.295833e-03

Joint ci ratio: 9.001907e-02	ci left: 7.188982e-03	ci right 7.870510e-03	k: 1881	n:250000
Cons ci ratio: 3.090246e-02	ci left: 5.953678e-02	ci right 6.140943e-02	k: 15117	n:250000
KS ci ratio: 1.096312e-01	ci left: 4.808962e-03	ci right 5.370606e-03	k: 1271	n:250000
NXF1   250000 perm   90 sec   (2776 perm/sec)   p_kst 5.084000e-03   p_cons 6.046800e-02   p_joint 7.524000e-03

Joint ci ratio: 8.830007e-02	ci left: 7.190752e-03	ci right 7.858758e-03	k: 1955	n:260000
Cons ci ratio: 3.027646e-02	ci left: 5.965150e-02	ci right 6.148908e-02	k: 15747	n:260000
KS ci ratio: 1.076200e-01	ci left: 4.803601e-03	ci right 5.353674e-03	k: 1319	n:260000
NXF1   260000 perm   95 sec   (2741 perm/sec)   p_kst 5.073077e-03   p_cons 6.056538e-02   p_joint 7.519231e-03

Joint ci ratio: 9.142424e-02	ci left: 6.453651e-03	ci right 7.075526e-03	k: 1825	n:270000
Cons ci ratio: 2.971310e-02	ci left: 5.965876e-02	ci right 6.146179e-02	k: 16350	n:270000
KS ci ratio: 1.058323e-01	ci left: 4.787905e-03	ci right 5.326507e-03	k: 1364	n:270000
NXF1   270000 perm   100 sec   (2709 perm/sec)   p_kst 5.051852e-03   p_cons 6.055556e-02   p_joint 6.759259e-03

Joint ci ratio: 8.981574e-02	ci left: 6.453536e-03	ci right 7.063884e-03	k: 1891	n:280000
Cons ci ratio: 2.916175e-02	ci left: 5.973675e-02	ci right 6.150807e-02	k: 16973	n:280000
KS ci ratio: 1.039458e-01	ci left: 4.790796e-03	ci right 5.319528e-03	k: 1414	n:280000
NXF1   280000 perm   105 sec   (2676 perm/sec)   p_kst 5.050000e-03   p_cons 6.061786e-02   p_joint 6.753571e-03

Joint ci ratio: 8.897814e-02	ci left: 6.352348e-03	ci right 6.947231e-03	k: 1927	n:290000
Cons ci ratio: 2.861750e-02	ci left: 5.989870e-02	ci right 6.164113e-02	k: 17622	n:290000
KS ci ratio: 1.022268e-01	ci left: 4.786845e-03	ci right 5.305880e-03	k: 1462	n:290000
NXF1   290000 perm   110 sec   (2644 perm/sec)   p_kst 5.041379e-03   p_cons 6.076552e-02   p_joint 6.644828e-03

Joint ci ratio: 9.353965e-02	ci left: 5.547664e-03	ci right 6.095282e-03	k: 1745	n:300000
Cons ci ratio: 2.813953e-02	ci left: 5.990112e-02	ci right 6.161405e-02	k: 18226	n:300000
KS ci ratio: 1.000923e-01	ci left: 4.831976e-03	ci right 5.344323e-03	k: 1525	n:300000
NXF1   300000 perm   115 sec   (2612 perm/sec)   p_kst 5.083333e-03   p_cons 6.075333e-02   p_joint 5.816667e-03

Joint ci ratio: 9.261947e-02	ci left: 5.478973e-03	ci right 6.014201e-03	k: 1780	n:310000
Cons ci ratio: 2.767536e-02	ci left: 5.994207e-02	ci right 6.162744e-02	k: 18842	n:310000
KS ci ratio: 9.842914e-02	ci left: 4.839685e-03	ci right 5.343829e-03	k: 1577	n:310000
NXF1   310000 perm   120 sec   (2581 perm/sec)   p_kst 5.087097e-03   p_cons 6.078065e-02   p_joint 5.741935e-03

Outputting figure to mutsig2_images.part000000000118/NXF1.8_1999_310000_0.0050871_0.060781_0.0057419.png
                gene_name: NXF1
               theta_stop: 0.098 
                    nperm: 310000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0053 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0060 

Current progress: 20 percent done.
NXF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
NXF5   10000 perm   2 sec   (4965 perm/sec)   p_kst 8.893000e-01   p_cons 2.592000e-01   p_joint 5.540000e-01

Outputting figure to mutsig2_images.part000000000118/NXF5.8_1154_10000_0.8893_0.2592_0.554.png
                gene_name: NXF5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 22 percent done.
NUAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
NUAK1   10000 perm   2 sec   (5686 perm/sec)   p_kst 2.957000e-01   p_cons 2.449000e-01   p_joint 2.516000e-01

Outputting figure to mutsig2_images.part000000000118/NUAK1.7_2014_10000_0.2957_0.2449_0.2516.png
                gene_name: NUAK1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
NUP107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
NUP107   10000 perm   2 sec   (4714 perm/sec)   p_kst 6.842000e-01   p_cons 9.087000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000118/NUP107.7_2890_10000_0.6842_0.9087_0.8663.png
                gene_name: NUP107
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 25 percent done.
NUP133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 2.049103e-02	ci left: 7.772209e-01	ci right 7.934125e-01	k: 7854	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
NUP133   10000 perm   2 sec   (4463 perm/sec)   p_kst 3.211000e-01   p_cons 7.854000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000118/NUP133.7_3575_10000_0.3211_0.7854_0.5185.png
                gene_name: NUP133
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 27 percent done.
NUP210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
Cons ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
KS ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
NUP210   10000 perm   3 sec   (3386 perm/sec)   p_kst 2.262000e-01   p_cons 4.866000e-01   p_joint 2.839000e-01

Outputting figure to mutsig2_images.part000000000118/NUP210.7_5824_10000_0.2262_0.4866_0.2839.png
                gene_name: NUP210
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
NUP98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
NUP98   10000 perm   3 sec   (3964 perm/sec)   p_kst 1.813000e-01   p_cons 3.427000e-01   p_joint 2.787000e-01

Outputting figure to mutsig2_images.part000000000118/NUP98.7_5603_10000_0.1813_0.3427_0.2787.png
                gene_name: NUP98
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 31 percent done.
NUMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NUMA1   10000 perm   3 sec   (3743 perm/sec)   p_kst 1   p_cons 3.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUMA1.6_6448_10000_1_0.3961_1.png
                gene_name: NUMA1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
NVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.816171e-02	ci left: 8.156806e-01	ci right 8.307306e-01	k: 8233	n:10000
Cons ci ratio: 2.664142e-03	ci left: 9.939832e-01	ci right 9.967158e-01	k: 9955	n:10000
KS ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
NVL   10000 perm   2 sec   (4684 perm/sec)   p_kst 7.244000e-01   p_cons 9.955000e-01   p_joint 8.233000e-01

Outputting figure to mutsig2_images.part000000000118/NVL.6_2663_10000_0.7244_0.9955_0.8233.png
                gene_name: NVL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 35 percent done.
NXPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
Cons ci ratio: 4.534601e-02	ci left: 4.178757e-01	ci right 4.373665e-01	k: 4276	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
NXPH2   10000 perm   2 sec   (5762 perm/sec)   p_kst 7.377000e-01   p_cons 4.276000e-01   p_joint 8.799000e-01

Outputting figure to mutsig2_images.part000000000118/NXPH2.6_803_10000_0.7377_0.4276_0.8799.png
                gene_name: NXPH2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 36 percent done.
NTNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
KS ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
NTNG2   10000 perm   2 sec   (5645 perm/sec)   p_kst 7.245000e-01   p_cons 9.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NTNG2.5_1621_10000_0.7245_0.9741_1.png
                gene_name: NTNG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
NTSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
Cons ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
KS ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
NTSR1   10000 perm   2 sec   (5573 perm/sec)   p_kst 5.376000e-01   p_cons 1.364000e-01   p_joint 4.023000e-01

Outputting figure to mutsig2_images.part000000000118/NTSR1.5_1273_10000_0.5376_0.1364_0.4023.png
                gene_name: NTSR1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
NUF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
Cons ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
KS ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
NUF2   10000 perm   2 sec   (5567 perm/sec)   p_kst 7.601000e-01   p_cons 3.648000e-01   p_joint 7.402000e-01

Outputting figure to mutsig2_images.part000000000118/NUF2.5_1447_10000_0.7601_0.3648_0.7402.png
                gene_name: NUF2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 42 percent done.
NUP160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
Cons ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
KS ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
NUP160   10000 perm   2 sec   (4058 perm/sec)   p_kst 2.508000e-01   p_cons 5.853000e-01   p_joint 3.642000e-01

Outputting figure to mutsig2_images.part000000000118/NUP160.5_4455_10000_0.2508_0.5853_0.3642.png
                gene_name: NUP160
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 44 percent done.
NUP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
KS ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
NUP43   10000 perm   2 sec   (5878 perm/sec)   p_kst 3.580000e-01   p_cons 5.040000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000118/NUP43.5_1175_10000_0.358_0.504_0.4281.png
                gene_name: NUP43
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 45 percent done.
NXF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
KS ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
NXF3   10000 perm   2 sec   (5381 perm/sec)   p_kst 7.072000e-01   p_cons 1.960000e-02   p_joint 8.230000e-02

Joint ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
Cons ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
KS ci ratio: 1.818014e-02	ci left: 6.927905e-01	ci right 7.055515e-01	k: 13984	n:20000
NXF3   20000 perm   4 sec   (4636 perm/sec)   p_kst 6.992000e-01   p_cons 1.890000e-02   p_joint 8.830000e-02

Joint ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
Cons ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
KS ci ratio: 1.496541e-02	ci left: 6.905250e-01	ci right 7.009704e-01	k: 20873	n:30000
NXF3   30000 perm   7 sec   (4388 perm/sec)   p_kst 6.957667e-01   p_cons 1.843333e-02   p_joint 4.123333e-02

Joint ci ratio: 6.005865e-02	ci left: 9.335192e-02	ci right 9.915684e-02	k: 3849	n:40000
Cons ci ratio: 1.325399e-01	ci left: 1.997997e-02	ci right 2.284010e-02	k: 855	n:40000
KS ci ratio: 1.306901e-02	ci left: 6.876753e-01	ci right 6.967467e-01	k: 27689	n:40000
NXF3   40000 perm   9 sec   (4245 perm/sec)   p_kst 6.922250e-01   p_cons 2.137500e-02   p_joint 9.622500e-02

Joint ci ratio: 6.053332e-02	ci left: 7.503285e-02	ci right 7.973635e-02	k: 3868	n:50000
Cons ci ratio: 1.186609e-01	ci left: 2.009114e-02	ci right 2.264485e-02	k: 1067	n:50000
KS ci ratio: 1.171524e-02	ci left: 6.872098e-01	ci right 6.953280e-01	k: 34564	n:50000
NXF3   50000 perm   12 sec   (4129 perm/sec)   p_kst 6.912800e-01   p_cons 2.134000e-02   p_joint 7.736000e-02

Joint ci ratio: 5.091292e-02	ci left: 8.762280e-02	ci right 9.221696e-02	k: 5394	n:60000
Cons ci ratio: 1.087392e-01	ci left: 2.004602e-02	ci right 2.236728e-02	k: 1271	n:60000
KS ci ratio: 1.068692e-02	ci left: 6.878704e-01	ci right 6.952777e-01	k: 41495	n:60000
NXF3   60000 perm   15 sec   (4025 perm/sec)   p_kst 6.915833e-01   p_cons 2.118333e-02   p_joint 8.990000e-02

Joint ci ratio: 5.637226e-02	ci left: 6.278991e-02	ci right 6.644628e-02	k: 4522	n:70000
Cons ci ratio: 1.001571e-01	ci left: 2.034070e-02	ci right 2.249923e-02	k: 1498	n:70000
KS ci ratio: 9.897442e-03	ci left: 6.880061e-01	ci right 6.948637e-01	k: 48401	n:70000
NXF3   70000 perm   18 sec   (3935 perm/sec)   p_kst 6.914429e-01   p_cons 2.140000e-02   p_joint 6.460000e-02

Joint ci ratio: 5.436405e-02	ci left: 5.936359e-02	ci right 6.269333e-02	k: 4881	n:80000
Cons ci ratio: 9.360873e-02	ci left: 2.044498e-02	ci right 2.246493e-02	k: 1715	n:80000
KS ci ratio: 9.275425e-03	ci left: 6.874339e-01	ci right 6.938523e-01	k: 55252	n:80000
NXF3   80000 perm   21 sec   (3848 perm/sec)   p_kst 6.906500e-01   p_cons 2.143750e-02   p_joint 6.101250e-02

Outputting figure to mutsig2_images.part000000000118/NXF3.5_1672_80000_0.69065_0.021438_0.061012.png
                gene_name: NXF3
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 47 percent done.
NUCKS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
KS ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
NUCKS1   10000 perm   2 sec   (6308 perm/sec)   p_kst 3.261000e-01   p_cons 8.411000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000118/NUCKS1.4_760_10000_0.3261_0.8411_0.5334.png
                gene_name: NUCKS1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
NUFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
KS ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
NUFIP2   10000 perm   2 sec   (5759 perm/sec)   p_kst 7.260000e-02   p_cons 1.982000e-01   p_joint 1.629000e-01

Joint ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
Cons ci ratio: 5.624620e-02	ci left: 1.898749e-01	ci right 2.009138e-01	k: 3907	n:20000
KS ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
NUFIP2   20000 perm   4 sec   (4987 perm/sec)   p_kst 6.795000e-02   p_cons 1.953500e-01   p_joint 1.317500e-01

Joint ci ratio: 7.900680e-02	ci left: 7.282946e-02	ci right 7.885299e-02	k: 2274	n:30000
Cons ci ratio: 4.590557e-02	ci left: 1.910253e-01	ci right 2.000338e-01	k: 5865	n:30000
KS ci ratio: 8.369824e-02	ci left: 6.527460e-02	ci right 7.100938e-02	k: 2043	n:30000
NUFIP2   30000 perm   6 sec   (4710 perm/sec)   p_kst 6.810000e-02   p_cons 1.955000e-01   p_joint 7.580000e-02

Outputting figure to mutsig2_images.part000000000118/NUFIP2.4_2104_30000_0.0681_0.1955_0.0758.png
                gene_name: NUFIP2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 51 percent done.
NUP153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
Cons ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
KS ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
NUP153   10000 perm   2 sec   (4394 perm/sec)   p_kst 4.755000e-01   p_cons 8.372000e-01   p_joint 6.621000e-01

Outputting figure to mutsig2_images.part000000000118/NUP153.4_4516_10000_0.4755_0.8372_0.6621.png
                gene_name: NUP153
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 53 percent done.
NUP85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
Cons ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
NUP85   10000 perm   2 sec   (5469 perm/sec)   p_kst 2.393000e-01   p_cons 5.924000e-01   p_joint 4.035000e-01

Outputting figure to mutsig2_images.part000000000118/NUP85.4_2047_10000_0.2393_0.5924_0.4035.png
                gene_name: NUP85
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 55 percent done.
NUP88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
Cons ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
NUP88   10000 perm   2 sec   (5160 perm/sec)   p_kst 8.930000e-02   p_cons 5.817000e-01   p_joint 1.494000e-01

Joint ci ratio: 6.182768e-02	ci left: 1.621508e-01	ci right 1.725461e-01	k: 3346	n:20000
Cons ci ratio: 2.360790e-02	ci left: 5.726726e-01	ci right 5.864043e-01	k: 11591	n:20000
KS ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
NUP88   20000 perm   4 sec   (4516 perm/sec)   p_kst 8.335000e-02   p_cons 5.795500e-01   p_joint 1.673000e-01

Outputting figure to mutsig2_images.part000000000118/NUP88.4_2294_20000_0.08335_0.57955_0.1673.png
                gene_name: NUP88
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 56 percent done.
NUP93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
NUP93   10000 perm   2 sec   (5278 perm/sec)   p_kst 7.292000e-01   p_cons 1.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUP93.4_2544_10000_0.7292_0.1612_1.png
                gene_name: NUP93
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
NUPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NUPL2   10000 perm   2 sec   (5654 perm/sec)   p_kst 1   p_cons 9.290000e-02   p_joint 3.147000e-01

Joint ci ratio: 4.489348e-02	ci left: 2.697630e-01	ci right 2.822021e-01	k: 5519	n:20000
Cons ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
NUPL2   20000 perm   4 sec   (4878 perm/sec)   p_kst 1   p_cons 9.290000e-02   p_joint 2.759500e-01

Outputting figure to mutsig2_images.part000000000118/NUPL2.4_1300_20000_1_0.0929_0.27595.png
                gene_name: NUPL2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 60 percent done.
NUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
NUB1   10000 perm   2 sec   (5781 perm/sec)   p_kst 9.678000e-01   p_cons 7.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUB1.3_1862_10000_0.9678_0.7597_1.png
                gene_name: NUB1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
NUDT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
NUDT13   10000 perm   2 sec   (6187 perm/sec)   p_kst 1.198000e-01   p_cons 3.399000e-01   p_joint 1.785000e-01

Joint ci ratio: 5.009438e-02	ci left: 2.284934e-01	ci right 2.402839e-01	k: 4687	n:20000
Cons ci ratio: 3.900093e-02	ci left: 3.290053e-01	ci right 3.421425e-01	k: 6711	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
NUDT13   20000 perm   4 sec   (5272 perm/sec)   p_kst 1.216000e-01   p_cons 3.355500e-01   p_joint 2.343500e-01

Outputting figure to mutsig2_images.part000000000118/NUDT13.3_1091_20000_0.1216_0.33555_0.23435.png
                gene_name: NUDT13
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 64 percent done.
NUDT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.489353e-02	ci left: 7.036192e-01	ci right 7.214569e-01	k: 7126	n:10000
KS ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
NUDT2   10000 perm   1 sec   (6982 perm/sec)   p_kst 6.665000e-01   p_cons 7.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT2.3_452_10000_0.6665_0.7126_1.png
                gene_name: NUDT2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
NUDT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
Cons ci ratio: 6.883135e-02	ci left: 2.363980e-01	ci right 2.533508e-01	k: 2448	n:10000
KS ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
NUDT7   10000 perm   1 sec   (6691 perm/sec)   p_kst 8.672000e-01   p_cons 2.448000e-01   p_joint 6.391000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT7.3_733_10000_0.8672_0.2448_0.6391.png
                gene_name: NUDT7
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 67 percent done.
NUFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
Cons ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
NUFIP1   10000 perm   2 sec   (5962 perm/sec)   p_kst 1.418000e-01   p_cons 1.936000e-01   p_joint 1.751000e-01

Outputting figure to mutsig2_images.part000000000118/NUFIP1.3_1528_10000_0.1418_0.1936_0.1751.png
                gene_name: NUFIP1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
NUPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
Cons ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
KS ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
NUPL1   10000 perm   2 sec   (5721 perm/sec)   p_kst 8.867000e-01   p_cons 1.469000e-01   p_joint 5.022000e-01

Outputting figure to mutsig2_images.part000000000118/NUPL1.3_1864_10000_0.8867_0.1469_0.5022.png
                gene_name: NUPL1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 71 percent done.
NXPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
KS ci ratio: 4.068000e-02	ci left: 4.715636e-01	ci right 4.912473e-01	k: 4814	n:10000
NXPH1   10000 perm   1 sec   (6685 perm/sec)   p_kst 4.814000e-01   p_cons 8.276000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NXPH1.3_824_10000_0.4814_0.8276_1.png
                gene_name: NXPH1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
NUBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
Cons ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
KS ci ratio: 1.801178e-02	ci left: 8.181200e-01	ci right 8.330898e-01	k: 8257	n:10000
NUBP2   10000 perm   1 sec   (7109 perm/sec)   p_kst 8.257000e-01   p_cons 2.027000e-01   p_joint 4.616000e-01

Outputting figure to mutsig2_images.part000000000118/NUBP2.2_844_10000_0.8257_0.2027_0.4616.png
                gene_name: NUBP2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 75 percent done.
NUDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
NUDT1   10000 perm   1 sec   (7045 perm/sec)   p_kst 5.216000e-01   p_cons 2.044000e-01   p_joint 2.516000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT1.2_556_10000_0.5216_0.2044_0.2516.png
                gene_name: NUDT1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 76 percent done.
NUDT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.099272e-02	ci left: 6.056818e-01	ci right 6.248510e-01	k: 6153	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
NUDT12   10000 perm   2 sec   (6470 perm/sec)   p_kst 4.070000e-02   p_cons 6.153000e-01   p_joint 1

Joint ci ratio: 9.176610e-03	ci left: 8.970320e-01	ci right 9.053510e-01	k: 18025	n:20000
Cons ci ratio: 2.090770e-02	ci left: 6.306425e-01	ci right 6.440176e-01	k: 12747	n:20000
KS ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
NUDT12   20000 perm   4 sec   (5471 perm/sec)   p_kst 4.140000e-02   p_cons 6.373500e-01   p_joint 9.012500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.780302e-02	ci left: 6.122066e-01	ci right 6.232372e-01	k: 18532	n:30000
KS ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
NUDT12   30000 perm   6 sec   (5134 perm/sec)   p_kst 4.186667e-02   p_cons 6.177333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.537016e-02	ci left: 6.144204e-01	ci right 6.239623e-01	k: 24768	n:40000
KS ci ratio: 9.455108e-02	ci left: 3.924870e-02	ci right 4.316826e-02	k: 1647	n:40000
NUDT12   40000 perm   8 sec   (4878 perm/sec)   p_kst 4.117500e-02   p_cons 6.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT12.2_1413_40000_0.041175_0.6192_1.png
                gene_name: NUDT12
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
NUDT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
KS ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
NUDT5   10000 perm   1 sec   (7004 perm/sec)   p_kst 9.801000e-01   p_cons 8.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT5.2_696_10000_0.9801_0.824_1.png
                gene_name: NUDT5
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NUDT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
KS ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
NUDT9   10000 perm   2 sec   (6473 perm/sec)   p_kst 9.529000e-01   p_cons 5.004000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT9.2_1085_10000_0.9529_0.5004_1.png
                gene_name: NUDT9
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NUMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
KS ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
NUMB   10000 perm   2 sec   (5985 perm/sec)   p_kst 3.561000e-01   p_cons 8.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUMB.2_1996_10000_0.3561_0.883_1.png
                gene_name: NUMB
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NUP35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
Cons ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
KS ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
NUP35   10000 perm   2 sec   (6637 perm/sec)   p_kst 8.929000e-01   p_cons 4.020000e-02   p_joint 9.922000e-01

Joint ci ratio: 7.033066e-03	ci left: 9.361577e-01	ci right 9.428138e-01	k: 18791	n:20000
Cons ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
KS ci ratio: 9.502965e-03	ci left: 8.905162e-01	ci right 8.990686e-01	k: 17897	n:20000
NUP35   20000 perm   4 sec   (5664 perm/sec)   p_kst 8.948500e-01   p_cons 4.215000e-02   p_joint 9.395500e-01

Joint ci ratio: 3.191409e-03	ci left: 9.789059e-01	ci right 9.820667e-01	k: 29416	n:30000
Cons ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
KS ci ratio: 7.775953e-03	ci left: 8.909012e-01	ci right 8.978889e-01	k: 26833	n:30000
NUP35   30000 perm   6 sec   (5303 perm/sec)   p_kst 8.944333e-01   p_cons 4.106667e-02   p_joint 9.805333e-01

Joint ci ratio: 2.731195e-03	ci left: 9.795883e-01	ci right 9.822913e-01	k: 39239	n:40000
Cons ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
KS ci ratio: 6.745900e-03	ci left: 8.910433e-01	ci right 8.970993e-01	k: 35764	n:40000
NUP35   40000 perm   8 sec   (5062 perm/sec)   p_kst 8.941000e-01   p_cons 4.185000e-02   p_joint 9.809750e-01

Outputting figure to mutsig2_images.part000000000118/NUP35.2_1017_40000_0.8941_0.04185_0.98098.png
                gene_name: NUP35
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 85 percent done.
NUP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
Cons ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
KS ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
NUP37   10000 perm   1 sec   (6754 perm/sec)   p_kst 7.828000e-01   p_cons 4.287000e-01   p_joint 9.073000e-01

Outputting figure to mutsig2_images.part000000000118/NUP37.2_1017_10000_0.7828_0.4287_0.9073.png
                gene_name: NUP37
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 87 percent done.
NUP50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
Cons ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
KS ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
NUP50   10000 perm   1 sec   (6705 perm/sec)   p_kst 8.166000e-01   p_cons 2.793000e-01   p_joint 8.826000e-01

Outputting figure to mutsig2_images.part000000000118/NUP50.2_1435_10000_0.8166_0.2793_0.8826.png
                gene_name: NUP50
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 89 percent done.
NUP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
NUP54   10000 perm   2 sec   (6313 perm/sec)   p_kst 6.310000e-02   p_cons 4.619000e-01   p_joint 3.516000e-01

Joint ci ratio: 4.919030e-02	ci left: 2.350360e-01	ci right 2.469394e-01	k: 4819	n:20000
Cons ci ratio: 2.989120e-02	ci left: 4.553711e-01	ci right 4.692399e-01	k: 9246	n:20000
KS ci ratio: 1.087976e-01	ci left: 5.762467e-02	ci right 6.430368e-02	k: 1218	n:20000
NUP54   20000 perm   4 sec   (5408 perm/sec)   p_kst 6.090000e-02   p_cons 4.623000e-01   p_joint 2.409500e-01

Joint ci ratio: 1.150448e-02	ci left: 7.900506e-01	ci right 7.992256e-01	k: 23840	n:30000
Cons ci ratio: 2.431855e-02	ci left: 4.584437e-01	ci right 4.697632e-01	k: 13923	n:30000
KS ci ratio: 8.760277e-02	ci left: 5.981931e-02	ci right 6.533244e-02	k: 1876	n:30000
NUP54   30000 perm   6 sec   (4960 perm/sec)   p_kst 6.253333e-02   p_cons 4.641000e-01   p_joint 7.946667e-01

Outputting figure to mutsig2_images.part000000000118/NUP54.2_1572_30000_0.062533_0.4641_0.79467.png
                gene_name: NUP54
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 91 percent done.
NUP62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
KS ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
NUP62   10000 perm   2 sec   (6376 perm/sec)   p_kst 8.503000e-01   p_cons 8.386000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000118/NUP62.2_1573_10000_0.8503_0.8386_0.9856.png
                gene_name: NUP62
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
NUP62CL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
Cons ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KS ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
NUP62CL   10000 perm   1 sec   (7346 perm/sec)   p_kst 3.624000e-01   p_cons 6.498000e-01   p_joint 7.673000e-01

Outputting figure to mutsig2_images.part000000000118/NUP62CL.2_579_10000_0.3624_0.6498_0.7673.png
                gene_name: NUP62CL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 95 percent done.
NUTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
Cons ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
KS ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
NUTF2   10000 perm   1 sec   (7282 perm/sec)   p_kst 4.375000e-01   p_cons 7.024000e-01   p_joint 7.088000e-01

Outputting figure to mutsig2_images.part000000000118/NUTF2.2_400_10000_0.4375_0.7024_0.7088.png
                gene_name: NUTF2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 96 percent done.
NWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
KS ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
NWD1   10000 perm   2 sec   (4852 perm/sec)   p_kst 1.298000e-01   p_cons 1.736000e-01   p_joint 1.945000e-01

Joint ci ratio: 5.166524e-02	ci left: 2.176924e-01	ci right 2.292881e-01	k: 4469	n:20000
Cons ci ratio: 6.017243e-02	ci left: 1.697565e-01	ci right 1.803381e-01	k: 3500	n:20000
KS ci ratio: 7.092353e-02	ci left: 1.277807e-01	ci right 1.372264e-01	k: 2649	n:20000
NWD1   20000 perm   5 sec   (4241 perm/sec)   p_kst 1.324500e-01   p_cons 1.750000e-01   p_joint 2.234500e-01

Outputting figure to mutsig2_images.part000000000118/NWD1.2_4354_20000_0.13245_0.175_0.22345.png
                gene_name: NWD1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
NXPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
Cons ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
KS ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
NXPH3   10000 perm   1 sec   (6913 perm/sec)   p_kst 2.541000e-01   p_cons 3.301000e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000118/NXPH3.2_767_10000_0.2541_0.3301_0.2274.png
                gene_name: NXPH3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000118
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 118 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 4422251: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000119> was used as the working directory.
Started at Wed Oct 24 18:01:26 2012
Results reported at Wed Oct 24 19:09:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000119.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000119.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 119  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000119.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4188.65 sec.
    Max Memory :      5283 MB
    Max Swap   :      7830 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
119
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 119
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 119: processing genes 10676 - 10766
Calculating significance of each gene.
Using projection method.
10676	NYNRIN	1
10677	OAF	1
10678	OAS1	4.844774e-01
10679	OAS2	8.660899e-01
10680	OAS3	9.246895e-01
10681	OASL	1
10682	OAT	9.139665e-01
10683	OAZ1	1
10684	OAZ2	1
10685	OAZ3	1
10686	OBFC1	7.204068e-01
10687	OBFC2A	3.868261e-01
10688	OBFC2B	7.429380e-01
10689	OBP2A	2.441352e-01
10690	OBP2B	3.869835e-01
10691	OBSCN	1
10692	OBSL1	8.210095e-01
10693	OC90	2.396179e-03
10694	OCA2	1
10695	OCEL1	1
10696	OCIAD1	4.509743e-01
10697	OCIAD2	1
10698	OCLM	1.978956e-01
In gene OCLN the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1447    n = 1	mu =   7.03e-07
10699	OCLN	8.044484e-01
10700	OCM	1
10701	OCM2	2.807396e-01
10702	OCRL	2.418913e-01
10703	ODAM	9.924795e-02
10704	ODC1	1
10705	ODF1	3.437686e-04
10706	ODF2	1.720048e-01
10707	ODF2L	9.269548e-01
10708	ODF3	1
10709	ODF3B	1
10710	ODF3L1	3.073987e-01
10711	ODF3L2	4.108399e-01
10712	ODF4	1
10713	ODZ1	1
10714	ODZ2	1
10715	ODZ3	9.999665e-01
10716	ODZ4	9.802738e-01
10717	OFD1	7.686344e-01
10718	OGDH	1
10719	OGDHL	9.694890e-01
10720	OGFOD1	7.751854e-01
10721	OGFOD2	9.220103e-01
10722	OGFR	1
10723	OGFRL1	1
10724	OGG1	7.833148e-01
10725	OGN	7.776514e-01
10726	OGT	9.248220e-01
10727	OIP5	7.202281e-01
10728	OIT3	3.516897e-01
10729	OLA1	5.411949e-01
10730	OLAH	1.772858e-03
10731	OLFM1	7.445804e-01
10732	OLFM2	1
10733	OLFM3	8.597064e-04
10734	OLFM4	8.644834e-01
10735	OLFML1	5.921993e-01
10736	OLFML2A	5.109695e-01
10737	OLFML2B	9.756918e-01
10738	OLFML3	7.235992e-01
10739	OLIG2	1
10740	OLIG3	1
10741	OLR1	2.370899e-01
10742	OMA1	7.877406e-01
10743	OMD	6.349410e-01
10744	OMG	1
10745	OMP	1
10746	ONECUT1	1
10747	ONECUT2	5.726100e-01
10748	OOEP	1.383739e-02
10749	OPA1	1
10750	OPA3	1
10751	OPALIN	2.413578e-01
10752	OPCML	7.748675e-01
10753	OPHN1	2.574440e-01
10754	OPLAH	7.208121e-01
10755	OPN1LW	5.703441e-01
10756	OPN1MW	1
10757	OPN1MW2	1
10758	OPN1SW	4.783773e-01
10759	OPN3	5.458752e-01
10760	OPN4	5.940045e-01
10761	OPN5	7.714266e-03
10762	OPRD1	8.956203e-01
10763	OPRK1	4.860433e-02
10764	OPRL1	6.705911e-02
10765	OPRM1	1
10766	OPTC	8.324243e-02
Done

Running MutSig 2:
Scatter job 119: processing genes 10676 - 10766
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ODZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
Cons ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
ODZ1   10000 perm   3 sec   (2909 perm/sec)   p_kst 5.960000e-01   p_cons 3.568000e-01   p_joint 5.621000e-01

Outputting figure to mutsig2_images.part000000000119/ODZ1.37_8327_10000_0.596_0.3568_0.5621.png
                gene_name: ODZ1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 2 percent done.
ODZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
Cons ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
KS ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
ODZ2   10000 perm   3 sec   (3226 perm/sec)   p_kst 3.180000e-02   p_cons 1.443000e-01   p_joint 6.360000e-02

Joint ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
Cons ci ratio: 7.636853e-02	ci left: 1.119372e-01	ci right 1.208747e-01	k: 2327	n:20000
KS ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
ODZ2   20000 perm   7 sec   (2982 perm/sec)   p_kst 2.910000e-02   p_cons 1.163500e-01   p_joint 2.545000e-02

Joint ci ratio: 1.738379e-01	ci left: 1.521640e-02	ci right 1.814495e-02	k: 499	n:30000
Cons ci ratio: 6.281397e-02	ci left: 1.112792e-01	ci right 1.185289e-01	k: 3446	n:30000
KS ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
ODZ2   30000 perm   10 sec   (2908 perm/sec)   p_kst 2.930000e-02   p_cons 1.148667e-01   p_joint 1.663333e-02

Joint ci ratio: 1.294076e-01	ci left: 2.097207e-02	ci right 2.389783e-02	k: 896	n:40000
Cons ci ratio: 5.170863e-02	ci left: 1.223671e-01	ci right 1.288873e-01	k: 5024	n:40000
KS ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
ODZ2   40000 perm   14 sec   (2857 perm/sec)   p_kst 2.925000e-02   p_cons 1.256000e-01   p_joint 2.240000e-02

Joint ci ratio: 1.230285e-01	ci left: 1.867441e-02	ci right 2.114177e-02	k: 994	n:50000
Cons ci ratio: 4.625495e-02	ci left: 1.226872e-01	ci right 1.285163e-01	k: 6279	n:50000
KS ci ratio: 1.008679e-01	ci left: 2.783916e-02	ci right 3.081582e-02	k: 1465	n:50000
ODZ2   50000 perm   18 sec   (2801 perm/sec)   p_kst 2.930000e-02   p_cons 1.255800e-01   p_joint 1.988000e-02

Joint ci ratio: 1.165645e-01	ci left: 1.742060e-02	ci right 1.959299e-02	k: 1109	n:60000
Cons ci ratio: 4.209400e-02	ci left: 1.236188e-01	ci right 1.289508e-01	k: 7576	n:60000
KS ci ratio: 9.181640e-02	ci left: 2.812799e-02	ci right 3.085111e-02	k: 1768	n:60000
ODZ2   60000 perm   22 sec   (2755 perm/sec)   p_kst 2.946667e-02   p_cons 1.262667e-01   p_joint 1.848333e-02

Joint ci ratio: 1.033368e-01	ci left: 1.910098e-02	ci right 2.119621e-02	k: 1409	n:70000
Cons ci ratio: 3.884545e-02	ci left: 1.245275e-01	ci right 1.294749e-01	k: 8889	n:70000
KS ci ratio: 8.502325e-02	ci left: 2.821696e-02	ci right 3.073652e-02	k: 2062	n:70000
ODZ2   70000 perm   26 sec   (2715 perm/sec)   p_kst 2.945714e-02   p_cons 1.269857e-01   p_joint 2.012857e-02

Joint ci ratio: 9.992109e-02	ci left: 1.793104e-02	ci right 1.982908e-02	k: 1509	n:80000
Cons ci ratio: 3.633661e-02	ci left: 1.246876e-01	ci right 1.293145e-01	k: 10159	n:80000
KS ci ratio: 7.930211e-02	ci left: 2.846093e-02	ci right 3.082335e-02	k: 2370	n:80000
ODZ2   80000 perm   30 sec   (2685 perm/sec)   p_kst 2.962500e-02   p_cons 1.269875e-01   p_joint 1.886250e-02

Outputting figure to mutsig2_images.part000000000119/ODZ2.33_8414_80000_0.029625_0.12699_0.018863.png
                gene_name: ODZ2
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 4 percent done.
OBSCN
Processing conservation and coverage...
39% 78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
OBSCN   10000 perm   5 sec   (1904 perm/sec)   p_kst 2.490000e-02   p_cons 1.770000e-02   p_joint 1.040000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
KS ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
OBSCN   20000 perm   11 sec   (1794 perm/sec)   p_kst 2.545000e-02   p_cons 1.715000e-02   p_joint 5.350000e-03

Joint ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
Cons ci ratio: 1.689227e-01	ci left: 1.614224e-02	ci right 1.915221e-02	k: 528	n:30000
KS ci ratio: 1.389777e-01	ci left: 2.403537e-02	ci right 2.765724e-02	k: 774	n:30000
OBSCN   30000 perm   17 sec   (1739 perm/sec)   p_kst 2.580000e-02   p_cons 1.760000e-02   p_joint 3.233333e-03

Joint ci ratio: 3.573038e-01	ci left: 2.465140e-03	ci right 3.558989e-03	k: 119	n:40000
Cons ci ratio: 1.481560e-01	ci left: 1.592442e-02	ci right 1.849636e-02	k: 687	n:40000
KS ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
OBSCN   40000 perm   23 sec   (1735 perm/sec)   p_kst 2.602500e-02   p_cons 1.717500e-02   p_joint 2.975000e-03

Joint ci ratio: 3.344457e-01	ci left: 2.282567e-03	ci right 3.216655e-03	k: 136	n:50000
Cons ci ratio: 1.319696e-01	ci left: 1.619457e-02	ci right 1.850196e-02	k: 866	n:50000
KS ci ratio: 1.075526e-01	ci left: 2.448638e-02	ci right 2.728903e-02	k: 1293	n:50000
OBSCN   50000 perm   29 sec   (1731 perm/sec)   p_kst 2.586000e-02   p_cons 1.732000e-02   p_joint 2.720000e-03

Joint ci ratio: 1.877007e-01	ci left: 6.539087e-03	ci right 7.909228e-03	k: 432	n:60000
Cons ci ratio: 1.168868e-01	ci left: 1.732347e-02	ci right 1.949013e-02	k: 1103	n:60000
KS ci ratio: 9.906292e-02	ci left: 2.417199e-02	ci right 2.670753e-02	k: 1525	n:60000
OBSCN   60000 perm   35 sec   (1711 perm/sec)   p_kst 2.541667e-02   p_cons 1.838333e-02   p_joint 7.200000e-03

Joint ci ratio: 1.913892e-01	ci left: 5.386891e-03	ci right 6.540353e-03	k: 416	n:70000
Cons ci ratio: 1.084739e-01	ci left: 1.731994e-02	ci right 1.932027e-02	k: 1281	n:70000
KS ci ratio: 9.172336e-02	ci left: 2.426098e-02	ci right 2.660715e-02	k: 1779	n:70000
OBSCN   70000 perm   41 sec   (1704 perm/sec)   p_kst 2.541429e-02   p_cons 1.830000e-02   p_joint 5.942857e-03

Joint ci ratio: 2.033180e-01	ci left: 4.154756e-03	ci right 5.106717e-03	k: 369	n:80000
Cons ci ratio: 1.016500e-01	ci left: 1.732152e-02	ci right 1.918865e-02	k: 1459	n:80000
KS ci ratio: 8.556848e-02	ci left: 2.446758e-02	ci right 2.666701e-02	k: 2044	n:80000
OBSCN   80000 perm   47 sec   (1698 perm/sec)   p_kst 2.555000e-02   p_cons 1.823750e-02   p_joint 4.612500e-03

Joint ci ratio: 1.990933e-01	ci left: 3.861878e-03	ci right 4.726108e-03	k: 385	n:90000
Cons ci ratio: 9.534995e-02	ci left: 1.755368e-02	ci right 1.932200e-02	k: 1658	n:90000
KS ci ratio: 8.065006e-02	ci left: 2.454523e-02	ci right 2.661883e-02	k: 2301	n:90000
OBSCN   90000 perm   53 sec   (1689 perm/sec)   p_kst 2.556667e-02   p_cons 1.842222e-02   p_joint 4.277778e-03

Joint ci ratio: 1.519648e-01	ci left: 6.107494e-03	ci right 7.121442e-03	k: 660	n:100000
Cons ci ratio: 9.031562e-02	ci left: 1.765425e-02	ci right 1.933384e-02	k: 1848	n:100000
KS ci ratio: 7.658485e-02	ci left: 2.455137e-02	ci right 2.651628e-02	k: 2552	n:100000
OBSCN   100000 perm   59 sec   (1681 perm/sec)   p_kst 2.552000e-02   p_cons 1.848000e-02   p_joint 6.600000e-03

Joint ci ratio: 1.479020e-01	ci left: 5.875959e-03	ci right 6.823078e-03	k: 697	n:110000
Cons ci ratio: 8.574609e-02	ci left: 1.784534e-02	ci right 1.945291e-02	k: 2050	n:110000
KS ci ratio: 7.302482e-02	ci left: 2.459427e-02	ci right 2.646722e-02	k: 2807	n:110000
OBSCN   110000 perm   66 sec   (1673 perm/sec)   p_kst 2.551818e-02   p_cons 1.863636e-02   p_joint 6.336364e-03

Joint ci ratio: 1.570231e-01	ci left: 4.760852e-03	ci right 5.580009e-03	k: 619	n:120000
Cons ci ratio: 8.216031e-02	ci left: 1.785122e-02	ci right 1.938884e-02	k: 2233	n:120000
KS ci ratio: 6.994260e-02	ci left: 2.461541e-02	ci right 2.640762e-02	k: 3060	n:120000
OBSCN   120000 perm   72 sec   (1660 perm/sec)   p_kst 2.550000e-02   p_cons 1.860833e-02   p_joint 5.158333e-03

Joint ci ratio: 1.504881e-01	ci left: 4.801444e-03	ci right 5.590106e-03	k: 674	n:130000
Cons ci ratio: 7.889006e-02	ci left: 1.790264e-02	ci right 1.938048e-02	k: 2422	n:130000
KS ci ratio: 6.761924e-02	ci left: 2.434720e-02	ci right 2.605868e-02	k: 3275	n:130000
OBSCN   130000 perm   79 sec   (1650 perm/sec)   p_kst 2.519231e-02   p_cons 1.863077e-02   p_joint 5.184615e-03

Joint ci ratio: 1.456115e-01	ci left: 4.774880e-03	ci right 5.531553e-03	k: 720	n:140000
Cons ci ratio: 7.632473e-02	ci left: 1.778654e-02	ci right 1.920493e-02	k: 2588	n:140000
KS ci ratio: 6.498027e-02	ci left: 2.451181e-02	ci right 2.616508e-02	k: 3546	n:140000
OBSCN   140000 perm   85 sec   (1641 perm/sec)   p_kst 2.532857e-02   p_cons 1.848571e-02   p_joint 5.142857e-03

Joint ci ratio: 1.411802e-01	ci left: 4.752216e-03	ci right 5.480449e-03	k: 766	n:150000
Cons ci ratio: 7.381712e-02	ci left: 1.777170e-02	ci right 1.914034e-02	k: 2767	n:150000
KS ci ratio: 6.299287e-02	ci left: 2.437331e-02	ci right 2.596512e-02	k: 3774	n:150000
OBSCN   150000 perm   92 sec   (1632 perm/sec)   p_kst 2.516000e-02   p_cons 1.844667e-02   p_joint 5.106667e-03

Joint ci ratio: 1.255462e-01	ci left: 5.675879e-03	ci right 6.442186e-03	k: 968	n:160000
Cons ci ratio: 7.111245e-02	ci left: 1.797430e-02	ci right 1.930573e-02	k: 2981	n:160000
KS ci ratio: 6.199217e-02	ci left: 2.362489e-02	ci right 2.514242e-02	k: 3900	n:160000
OBSCN   160000 perm   99 sec   (1615 perm/sec)   p_kst 2.437500e-02   p_cons 1.863125e-02   p_joint 6.050000e-03

Joint ci ratio: 1.299575e-01	ci left: 4.977443e-03	ci right 5.674884e-03	k: 904	n:170000
Cons ci ratio: 6.894905e-02	ci left: 1.801507e-02	ci right 1.930730e-02	k: 3171	n:170000
KS ci ratio: 6.029660e-02	ci left: 2.352686e-02	ci right 2.499531e-02	k: 4123	n:170000
OBSCN   170000 perm   106 sec   (1605 perm/sec)   p_kst 2.425294e-02   p_cons 1.865294e-02   p_joint 5.317647e-03

Joint ci ratio: 1.286968e-01	ci left: 4.797654e-03	ci right 5.462882e-03	k: 922	n:180000
Cons ci ratio: 6.673952e-02	ci left: 1.817754e-02	ci right 1.943802e-02	k: 3384	n:180000
KS ci ratio: 5.849207e-02	ci left: 2.363189e-02	ci right 2.506126e-02	k: 4381	n:180000
OBSCN   180000 perm   113 sec   (1596 perm/sec)   p_kst 2.433889e-02   p_cons 1.880000e-02   p_joint 5.122222e-03

Joint ci ratio: 1.285743e-01	ci left: 4.555297e-03	ci right 5.186272e-03	k: 924	n:190000
Cons ci ratio: 6.494149e-02	ci left: 1.820438e-02	ci right 1.943142e-02	k: 3574	n:190000
KS ci ratio: 5.689070e-02	ci left: 2.368493e-02	ci right 2.507700e-02	k: 4631	n:190000
OBSCN   190000 perm   120 sec   (1587 perm/sec)   p_kst 2.437368e-02   p_cons 1.881053e-02   p_joint 4.863158e-03

Joint ci ratio: 1.315518e-01	ci left: 4.129141e-03	ci right 4.715365e-03	k: 883	n:200000
Cons ci ratio: 6.325567e-02	ci left: 1.824370e-02	ci right 1.944030e-02	k: 3767	n:200000
KS ci ratio: 5.538498e-02	ci left: 2.375781e-02	ci right 2.511602e-02	k: 4886	n:200000
OBSCN   200000 perm   127 sec   (1577 perm/sec)   p_kst 2.443000e-02   p_cons 1.883500e-02   p_joint 4.415000e-03

Joint ci ratio: 1.155301e-01	ci left: 5.137265e-03	ci right 5.771741e-03	k: 1144	n:210000
Cons ci ratio: 6.166295e-02	ci left: 1.829841e-02	ci right 1.946730e-02	k: 3964	n:210000
KS ci ratio: 5.384805e-02	ci left: 2.395107e-02	ci right 2.528115e-02	k: 5168	n:210000
OBSCN   210000 perm   134 sec   (1566 perm/sec)   p_kst 2.460952e-02   p_cons 1.887619e-02   p_joint 5.447619e-03

Joint ci ratio: 1.199407e-01	ci left: 4.541914e-03	ci right 5.125795e-03	k: 1062	n:220000
Cons ci ratio: 6.017741e-02	ci left: 1.835297e-02	ci right 1.949612e-02	k: 4162	n:220000
KS ci ratio: 5.256595e-02	ci left: 2.400607e-02	ci right 2.530650e-02	k: 5423	n:220000
OBSCN   220000 perm   141 sec   (1555 perm/sec)   p_kst 2.465000e-02   p_cons 1.891818e-02   p_joint 4.827273e-03

Joint ci ratio: 1.168991e-01	ci left: 4.580712e-03	ci right 5.153615e-03	k: 1118	n:230000
Cons ci ratio: 5.875312e-02	ci left: 1.842880e-02	ci right 1.954858e-02	k: 4366	n:230000
KS ci ratio: 5.124189e-02	ci left: 2.417685e-02	ci right 2.545256e-02	k: 5706	n:230000
OBSCN   230000 perm   149 sec   (1546 perm/sec)   p_kst 2.480870e-02   p_cons 1.898261e-02   p_joint 4.860870e-03

Joint ci ratio: 1.144699e-01	ci left: 4.584062e-03	ci right 5.144665e-03	k: 1166	n:240000
Cons ci ratio: 5.747026e-02	ci left: 1.846985e-02	ci right 1.956681e-02	k: 4563	n:240000
KS ci ratio: 5.024582e-02	ci left: 2.411152e-02	ci right 2.535833e-02	k: 5935	n:240000
OBSCN   240000 perm   156 sec   (1538 perm/sec)   p_kst 2.472917e-02   p_cons 1.901250e-02   p_joint 4.858333e-03

Joint ci ratio: 1.124188e-01	ci left: 4.567817e-03	ci right 5.115760e-03	k: 1209	n:250000
Cons ci ratio: 5.631618e-02	ci left: 1.847630e-02	ci right 1.955089e-02	k: 4752	n:250000
KS ci ratio: 4.921569e-02	ci left: 2.413858e-02	ci right 2.536047e-02	k: 6186	n:250000
OBSCN   250000 perm   163 sec   (1531 perm/sec)   p_kst 2.474400e-02   p_cons 1.900800e-02   p_joint 4.836000e-03

Joint ci ratio: 1.104742e-01	ci left: 4.552904e-03	ci right 5.088996e-03	k: 1252	n:260000
Cons ci ratio: 5.523464e-02	ci left: 1.847867e-02	ci right 1.953209e-02	k: 4940	n:260000
KS ci ratio: 4.830031e-02	ci left: 2.411059e-02	ci right 2.530773e-02	k: 6423	n:260000
OBSCN   260000 perm   171 sec   (1522 perm/sec)   p_kst 2.470385e-02   p_cons 1.900000e-02   p_joint 4.815385e-03

Joint ci ratio: 1.091359e-01	ci left: 4.495932e-03	ci right 5.018490e-03	k: 1283	n:270000
Cons ci ratio: 5.421849e-02	ci left: 1.847739e-02	ci right 1.951075e-02	k: 5127	n:270000
KS ci ratio: 4.740863e-02	ci left: 2.411049e-02	ci right 2.528493e-02	k: 6667	n:270000
OBSCN   270000 perm   178 sec   (1513 perm/sec)   p_kst 2.469259e-02   p_cons 1.898889e-02   p_joint 4.751852e-03

Joint ci ratio: 9.938872e-02	ci left: 5.250303e-03	ci right 5.802865e-03	k: 1546	n:280000
Cons ci ratio: 5.326155e-02	ci left: 1.847284e-02	ci right 1.948715e-02	k: 5313	n:280000
KS ci ratio: 4.666158e-02	ci left: 2.401173e-02	ci right 2.516243e-02	k: 6883	n:280000
OBSCN   280000 perm   186 sec   (1504 perm/sec)   p_kst 2.458214e-02   p_cons 1.897500e-02   p_joint 5.521429e-03

Outputting figure to mutsig2_images.part000000000119/OBSCN.32_25533_280000_0.024582_0.018975_0.0055214.png
                gene_name: OBSCN
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.0055 
     ci_joint_bounds_left: 0.0053 
    ci_joint_bounds_right: 0.0058 

Current progress: 6 percent done.
ODZ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
ODZ4   10000 perm   3 sec   (3254 perm/sec)   p_kst 8.230000e-02   p_cons 1.040000e-02   p_joint 8.600000e-03

Joint ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
Cons ci ratio: 2.993624e-01	ci left: 7.228280e-03	ci right 9.817657e-03	k: 169	n:20000
KS ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
ODZ4   20000 perm   7 sec   (3023 perm/sec)   p_kst 7.565000e-02   p_cons 8.450000e-03   p_joint 1.165000e-02

Joint ci ratio: 2.478852e-01	ci left: 7.241974e-03	ci right 9.321610e-03	k: 247	n:30000
Cons ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
KS ci ratio: 7.921421e-02	ci left: 7.246949e-02	ci right 7.847970e-02	k: 2263	n:30000
ODZ4   30000 perm   10 sec   (2949 perm/sec)   p_kst 7.543333e-02   p_cons 8.700000e-03   p_joint 8.233333e-03

Joint ci ratio: 2.301523e-01	ci left: 6.371322e-03	ci right 8.051413e-03	k: 287	n:40000
Cons ci ratio: 2.045243e-01	ci left: 8.168963e-03	ci right 1.005334e-02	k: 363	n:40000
KS ci ratio: 6.842620e-02	ci left: 7.322456e-02	ci right 7.843721e-02	k: 3032	n:40000
ODZ4   40000 perm   14 sec   (2881 perm/sec)   p_kst 7.580000e-02   p_cons 9.075000e-03   p_joint 7.175000e-03

Joint ci ratio: 2.215882e-01	ci left: 5.530762e-03	ci right 6.927498e-03	k: 310	n:50000
Cons ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
KS ci ratio: 6.119583e-02	ci left: 7.351443e-02	ci right 7.817496e-02	k: 3791	n:50000
ODZ4   50000 perm   18 sec   (2852 perm/sec)   p_kst 7.582000e-02   p_cons 9.460000e-03   p_joint 6.200000e-03

Joint ci ratio: 1.826687e-01	ci left: 6.920666e-03	ci right 8.327588e-03	k: 456	n:60000
Cons ci ratio: 1.650228e-01	ci left: 8.547432e-03	ci right 1.010059e-02	k: 558	n:60000
KS ci ratio: 5.606018e-02	ci left: 7.323375e-02	ci right 7.747410e-02	k: 4520	n:60000
ODZ4   60000 perm   21 sec   (2826 perm/sec)   p_kst 7.533333e-02   p_cons 9.300000e-03   p_joint 7.600000e-03

Joint ci ratio: 1.162435e-01	ci left: 1.505569e-02	ci right 1.692760e-02	k: 1118	n:70000
Cons ci ratio: 1.462619e-01	ci left: 9.413798e-03	ci right 1.091294e-02	k: 710	n:70000
KS ci ratio: 4.956872e-02	ci left: 7.997773e-02	ci right 8.405700e-02	k: 5740	n:70000
ODZ4   70000 perm   25 sec   (2800 perm/sec)   p_kst 8.200000e-02   p_cons 1.014286e-02   p_joint 1.597143e-02

Joint ci ratio: 1.101833e-01	ci left: 1.471615e-02	ci right 1.644424e-02	k: 1245	n:80000
Cons ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
KS ci ratio: 4.644503e-02	ci left: 7.986037e-02	ci right 8.367003e-02	k: 6540	n:80000
ODZ4   80000 perm   29 sec   (2772 perm/sec)   p_kst 8.175000e-02   p_cons 1.002500e-02   p_joint 1.556250e-02

Joint ci ratio: 1.119783e-01	ci left: 1.268058e-02	ci right 1.419547e-02	k: 1208	n:90000
Cons ci ratio: 1.290727e-01	ci left: 9.489282e-03	ci right 1.080924e-02	k: 912	n:90000
KS ci ratio: 4.390466e-02	ci left: 7.957746e-02	ci right 8.316069e-02	k: 7322	n:90000
ODZ4   90000 perm   33 sec   (2745 perm/sec)   p_kst 8.135556e-02   p_cons 1.013333e-02   p_joint 1.342222e-02

Joint ci ratio: 1.066485e-01	ci left: 1.261860e-02	ci right 1.404983e-02	k: 1332	n:100000
Cons ci ratio: 1.218105e-01	ci left: 9.625268e-03	ci right 1.088338e-02	k: 1024	n:100000
KS ci ratio: 4.170653e-02	ci left: 7.947462e-02	ci right 8.286972e-02	k: 8116	n:100000
ODZ4   100000 perm   37 sec   (2719 perm/sec)   p_kst 8.116000e-02   p_cons 1.024000e-02   p_joint 1.332000e-02

Joint ci ratio: 1.001158e-01	ci left: 1.305683e-02	ci right 1.444171e-02	k: 1511	n:110000
Cons ci ratio: 1.150893e-01	ci left: 9.835372e-03	ci right 1.104519e-02	k: 1147	n:110000
KS ci ratio: 3.968756e-02	ci left: 7.984461e-02	ci right 8.308659e-02	k: 8960	n:110000
ODZ4   110000 perm   41 sec   (2688 perm/sec)   p_kst 8.145455e-02   p_cons 1.042727e-02   p_joint 1.373636e-02

Joint ci ratio: 9.840927e-02	ci left: 1.240738e-02	ci right 1.369965e-02	k: 1565	n:120000
Cons ci ratio: 1.102504e-01	ci left: 9.849911e-03	ci right 1.100727e-02	k: 1250	n:120000
KS ci ratio: 3.801836e-02	ci left: 7.983403e-02	ci right 8.293624e-02	k: 9765	n:120000
ODZ4   120000 perm   45 sec   (2659 perm/sec)   p_kst 8.137500e-02   p_cons 1.041667e-02   p_joint 1.304167e-02

Joint ci ratio: 8.782794e-02	ci left: 1.442901e-02	ci right 1.576197e-02	k: 1961	n:130000
Cons ci ratio: 1.059745e-01	ci left: 9.863115e-03	ci right 1.097427e-02	k: 1353	n:130000
KS ci ratio: 3.651716e-02	ci left: 7.993430e-02	ci right 8.291517e-02	k: 10584	n:130000
ODZ4   130000 perm   49 sec   (2633 perm/sec)   p_kst 8.141538e-02   p_cons 1.040769e-02   p_joint 1.508462e-02

Joint ci ratio: 7.486483e-02	ci left: 1.848757e-02	ci right 1.993244e-02	k: 2688	n:140000
Cons ci ratio: 1.020897e-01	ci left: 9.889101e-03	ci right 1.095989e-02	k: 1458	n:140000
KS ci ratio: 3.600709e-02	ci left: 7.664294e-02	ci right 7.946028e-02	k: 10926	n:140000
ODZ4   140000 perm   54 sec   (2609 perm/sec)   p_kst 7.804286e-02   p_cons 1.041429e-02   p_joint 1.920000e-02

Joint ci ratio: 7.321312e-02	ci left: 1.806628e-02	ci right 1.944574e-02	k: 2812	n:150000
Cons ci ratio: 9.844414e-02	ci left: 9.944787e-03	ci right 1.098093e-02	k: 1568	n:150000
KS ci ratio: 3.471305e-02	ci left: 7.699162e-02	ci right 7.971803e-02	k: 11752	n:150000
ODZ4   150000 perm   58 sec   (2568 perm/sec)   p_kst 7.834667e-02   p_cons 1.045333e-02   p_joint 1.874667e-02

Outputting figure to mutsig2_images.part000000000119/ODZ4.23_8430_150000_0.078347_0.010453_0.018747.png
                gene_name: ODZ4
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 7 percent done.
ODZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
Cons ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
KS ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
ODZ3   10000 perm   3 sec   (3433 perm/sec)   p_kst 6.800000e-02   p_cons 2.351000e-01   p_joint 1.077000e-01

Joint ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
Cons ci ratio: 4.990669e-02	ci left: 2.298315e-01	ci right 2.416454e-01	k: 4714	n:20000
KS ci ratio: 1.006450e-01	ci left: 6.694105e-02	ci right 7.408442e-02	k: 1409	n:20000
ODZ3   20000 perm   6 sec   (3092 perm/sec)   p_kst 7.045000e-02   p_cons 2.357000e-01   p_joint 8.630000e-02

Joint ci ratio: 7.589222e-02	ci left: 7.855894e-02	ci right 8.478902e-02	k: 2449	n:30000
Cons ci ratio: 4.032182e-02	ci left: 2.347125e-01	ci right 2.444047e-01	k: 7186	n:30000
KS ci ratio: 8.520659e-02	ci left: 6.308525e-02	ci right 6.873250e-02	k: 1976	n:30000
ODZ3   30000 perm   10 sec   (3042 perm/sec)   p_kst 6.586667e-02   p_cons 2.395333e-01   p_joint 8.163333e-02

Outputting figure to mutsig2_images.part000000000119/ODZ3.22_8208_30000_0.065867_0.23953_0.081633.png
                gene_name: ODZ3
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 9 percent done.
OCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
Cons ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
KS ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
OCA2   10000 perm   2 sec   (4675 perm/sec)   p_kst 1.370000e-01   p_cons 7.803000e-01   p_joint 2.362000e-01

Outputting figure to mutsig2_images.part000000000119/OCA2.17_2609_10000_0.137_0.7803_0.2362.png
                gene_name: OCA2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
OLFM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
OLFM3   10000 perm   2 sec   (5514 perm/sec)   p_kst 8.874000e-01   p_cons 1.232000e-01   p_joint 5.120000e-01

Joint ci ratio: 3.305968e-02	ci left: 4.059149e-01	ci right 4.196105e-01	k: 8255	n:20000
Cons ci ratio: 7.547245e-02	ci left: 1.143465e-01	ci right 1.233646e-01	k: 2376	n:20000
KS ci ratio: 9.963578e-03	ci left: 8.811076e-01	ci right 8.899800e-01	k: 17712	n:20000
OLFM3   20000 perm   4 sec   (4935 perm/sec)   p_kst 8.856000e-01   p_cons 1.188000e-01   p_joint 4.127500e-01

Outputting figure to mutsig2_images.part000000000119/OLFM3.12_1401_20000_0.8856_0.1188_0.41275.png
                gene_name: OLFM3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 13 percent done.
OGDHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.448086e-02	ci left: 7.104810e-01	ci right 7.281911e-01	k: 7194	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
OGDHL   10000 perm   2 sec   (4685 perm/sec)   p_kst 5.701000e-01   p_cons 7.740000e-01   p_joint 7.194000e-01

Outputting figure to mutsig2_images.part000000000119/OGDHL.11_3121_10000_0.5701_0.774_0.7194.png
                gene_name: OGDHL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 15 percent done.
OC90
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
OC90   10000 perm   2 sec   (5466 perm/sec)   p_kst 3.157000e-01   p_cons 4.613000e-01   p_joint 4.608000e-01

Outputting figure to mutsig2_images.part000000000119/OC90.9_1486_10000_0.3157_0.4613_0.4608.png
                gene_name: OC90
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 17 percent done.
OLFM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
Cons ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
KS ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
OLFM4   10000 perm   2 sec   (5351 perm/sec)   p_kst 8.649000e-01   p_cons 9.350000e-01   p_joint 9.466000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM4.10_1553_10000_0.8649_0.935_0.9466.png
                gene_name: OLFM4
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 19 percent done.
OBSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
Cons ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
OBSL1   10000 perm   2 sec   (4234 perm/sec)   p_kst 7.950000e-02   p_cons 1.654000e-01   p_joint 6.950000e-02

Joint ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
Cons ci ratio: 6.517918e-02	ci left: 1.481353e-01	ci right 1.581658e-01	k: 3062	n:20000
KS ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
OBSL1   20000 perm   5 sec   (3898 perm/sec)   p_kst 8.205000e-02   p_cons 1.531000e-01   p_joint 7.275000e-02

Outputting figure to mutsig2_images.part000000000119/OBSL1.9_5927_20000_0.08205_0.1531_0.07275.png
                gene_name: OBSL1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 20 percent done.
ODF2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
ODF2   10000 perm   2 sec   (5105 perm/sec)   p_kst 4.548000e-01   p_cons 8.870000e-02   p_joint 1.282000e-01

Joint ci ratio: 5.581171e-02	ci left: 1.922986e-01	ci right 2.033894e-01	k: 3956	n:20000
Cons ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
KS ci ratio: 3.032465e-02	ci left: 4.482304e-01	ci right 4.620827e-01	k: 9103	n:20000
ODF2   20000 perm   5 sec   (4206 perm/sec)   p_kst 4.551500e-01   p_cons 9.400000e-02   p_joint 1.978000e-01

Outputting figure to mutsig2_images.part000000000119/ODF2.8_2688_20000_0.45515_0.094_0.1978.png
                gene_name: ODF2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 22 percent done.
NYNRIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
NYNRIN   10000 perm   2 sec   (4538 perm/sec)   p_kst 2.798000e-01   p_cons 3.835000e-01   p_joint 3.455000e-01

Outputting figure to mutsig2_images.part000000000119/NYNRIN.8_5729_10000_0.2798_0.3835_0.3455.png
                gene_name: NYNRIN
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 24 percent done.
ODF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
Cons ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
KS ci ratio: 1.006058e-01	ci left: 1.251301e-01	ci right 1.384852e-01	k: 1317	n:10000
ODF1   10000 perm   2 sec   (5835 perm/sec)   p_kst 1.317000e-01   p_cons 6.750000e-02   p_joint 1.183000e-01

Joint ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
Cons ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
KS ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
ODF1   20000 perm   4 sec   (5323 perm/sec)   p_kst 1.290500e-01   p_cons 7.005000e-02   p_joint 7.975000e-02

Joint ci ratio: 9.463309e-02	ci left: 5.153421e-02	ci right 5.668591e-02	k: 1622	n:30000
Cons ci ratio: 8.308915e-02	ci left: 6.618981e-02	ci right 7.196065e-02	k: 2071	n:30000
KS ci ratio: 5.991480e-02	ci left: 1.211129e-01	ci right 1.286266e-01	k: 3745	n:30000
ODF1   30000 perm   6 sec   (5099 perm/sec)   p_kst 1.248333e-01   p_cons 6.903333e-02   p_joint 5.406667e-02

Outputting figure to mutsig2_images.part000000000119/ODF1.8_761_30000_0.12483_0.069033_0.054067.png
                gene_name: ODF1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 26 percent done.
OLFML2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
KS ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
OLFML2B   10000 perm   2 sec   (5427 perm/sec)   p_kst 2.359000e-01   p_cons 1.980000e-02   p_joint 4.760000e-02

Joint ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
Cons ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
KS ci ratio: 4.996215e-02	ci left: 2.294350e-01	ci right 2.412420e-01	k: 4706	n:20000
OLFML2B   20000 perm   4 sec   (4908 perm/sec)   p_kst 2.353000e-01   p_cons 2.005000e-02   p_joint 4.255000e-02

Joint ci ratio: 1.283959e-01	ci left: 2.819549e-02	ci right 3.209621e-02	k: 903	n:30000
Cons ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
KS ci ratio: 4.098196e-02	ci left: 2.288875e-01	ci right 2.384974e-01	k: 7010	n:30000
OLFML2B   30000 perm   6 sec   (4708 perm/sec)   p_kst 2.336667e-01   p_cons 1.963333e-02   p_joint 3.010000e-02

Joint ci ratio: 1.286032e-01	ci left: 2.123838e-02	ci right 2.418148e-02	k: 907	n:40000
Cons ci ratio: 1.403644e-01	ci left: 1.778113e-02	ci right 2.048932e-02	k: 764	n:40000
KS ci ratio: 3.575860e-02	ci left: 2.268768e-01	ci right 2.351623e-01	k: 9240	n:40000
OLFML2B   40000 perm   9 sec   (4587 perm/sec)   p_kst 2.310000e-01   p_cons 1.910000e-02   p_joint 2.267500e-02

Joint ci ratio: 1.015117e-01	ci left: 2.748801e-02	ci right 3.044701e-02	k: 1447	n:50000
Cons ci ratio: 1.190602e-01	ci left: 1.995522e-02	ci right 2.250079e-02	k: 1060	n:50000
KS ci ratio: 3.148096e-02	ci left: 2.329598e-01	ci right 2.404308e-01	k: 11834	n:50000
OLFML2B   50000 perm   11 sec   (4490 perm/sec)   p_kst 2.366800e-01   p_cons 2.120000e-02   p_joint 2.894000e-02

Joint ci ratio: 9.622134e-02	ci left: 2.562001e-02	ci right 2.822602e-02	k: 1614	n:60000
Cons ci ratio: 1.121178e-01	ci left: 1.884609e-02	ci right 2.110068e-02	k: 1197	n:60000
KS ci ratio: 2.880184e-02	ci left: 2.324908e-01	ci right 2.393014e-01	k: 14153	n:60000
OLFML2B   60000 perm   14 sec   (4402 perm/sec)   p_kst 2.358833e-01   p_cons 1.995000e-02   p_joint 2.690000e-02

Joint ci ratio: 9.436790e-02	ci left: 2.292071e-02	ci right 2.520469e-02	k: 1683	n:70000
Cons ci ratio: 9.791120e-02	ci left: 2.128857e-02	ci right 2.349413e-02	k: 1566	n:70000
KS ci ratio: 2.658002e-02	ci left: 2.338963e-01	ci right 2.402112e-01	k: 16593	n:70000
OLFML2B   70000 perm   16 sec   (4323 perm/sec)   p_kst 2.370429e-01   p_cons 2.237143e-02   p_joint 2.404286e-02

Outputting figure to mutsig2_images.part000000000119/OLFML2B.8_2285_70000_0.23704_0.022371_0.024043.png
                gene_name: OLFML2B
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 28 percent done.
OIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
OIT3   10000 perm   2 sec   (6071 perm/sec)   p_kst 3.043000e-01   p_cons 3.335000e-01   p_joint 4.098000e-01

Outputting figure to mutsig2_images.part000000000119/OIT3.7_1674_10000_0.3043_0.3335_0.4098.png
                gene_name: OIT3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 30 percent done.
OLAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
OLAH   10000 perm   2 sec   (5769 perm/sec)   p_kst 7.300000e-03   p_cons 1.022000e-01   p_joint 1.230000e-02

Joint ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
Cons ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
KS ci ratio: 3.126171e-01	ci left: 6.581657e-03	ci right 9.064647e-03	k: 155	n:20000
OLAH   20000 perm   4 sec   (5325 perm/sec)   p_kst 7.750000e-03   p_cons 1.034000e-01   p_joint 1.695000e-02

Joint ci ratio: 1.576201e-01	ci left: 1.860592e-02	ci right 2.182127e-02	k: 605	n:30000
Cons ci ratio: 6.572578e-02	ci left: 1.025053e-01	ci right 1.095045e-01	k: 3179	n:30000
KS ci ratio: 2.525475e-01	ci left: 6.960659e-03	ci right 9.003021e-03	k: 238	n:30000
OLAH   30000 perm   6 sec   (5130 perm/sec)   p_kst 7.933333e-03   p_cons 1.059667e-01   p_joint 2.016667e-02

Joint ci ratio: 2.182537e-01	ci left: 7.126712e-03	ci right 8.895833e-03	k: 319	n:40000
Cons ci ratio: 5.367556e-02	ci left: 1.144832e-01	ci right 1.208224e-01	k: 4705	n:40000
KS ci ratio: 2.123145e-01	ci left: 7.552622e-03	ci right 9.369820e-03	k: 337	n:40000
OLAH   40000 perm   8 sec   (4971 perm/sec)   p_kst 8.425000e-03   p_cons 1.176250e-01   p_joint 7.975000e-03

Joint ci ratio: 2.230361e-01	ci left: 5.455194e-03	ci right 6.843083e-03	k: 306	n:50000
Cons ci ratio: 4.785467e-02	ci left: 1.154814e-01	ci right 1.211630e-01	k: 5915	n:50000
KS ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
OLAH   50000 perm   10 sec   (4852 perm/sec)   p_kst 8.460000e-03   p_cons 1.183000e-01   p_joint 6.120000e-03

Joint ci ratio: 1.504801e-01	ci left: 1.034124e-02	ci right 1.203987e-02	k: 670	n:60000
Cons ci ratio: 4.374531e-02	ci left: 1.154453e-01	ci right 1.206250e-01	k: 7081	n:60000
KS ci ratio: 1.728398e-01	ci left: 7.765004e-03	ci right 9.249791e-03	k: 509	n:60000
OLAH   60000 perm   13 sec   (4752 perm/sec)   p_kst 8.483333e-03   p_cons 1.180167e-01   p_joint 1.116667e-02

Joint ci ratio: 1.326902e-01	ci left: 1.149661e-02	ci right 1.314419e-02	k: 861	n:70000
Cons ci ratio: 4.033262e-02	ci left: 1.164968e-01	ci right 1.213063e-01	k: 8322	n:70000
KS ci ratio: 1.592111e-01	ci left: 7.901818e-03	ci right 9.282237e-03	k: 600	n:70000
OLAH   70000 perm   15 sec   (4663 perm/sec)   p_kst 8.571429e-03   p_cons 1.188857e-01   p_joint 1.230000e-02

Joint ci ratio: 1.289185e-01	ci left: 1.068797e-02	ci right 1.217278e-02	k: 913	n:80000
Cons ci ratio: 3.780220e-02	ci left: 1.162432e-01	ci right 1.207345e-01	k: 9478	n:80000
KS ci ratio: 1.493521e-01	ci left: 7.899547e-03	ci right 9.186475e-03	k: 682	n:80000
OLAH   80000 perm   17 sec   (4573 perm/sec)   p_kst 8.525000e-03   p_cons 1.184750e-01   p_joint 1.141250e-02

Joint ci ratio: 1.696100e-01	ci left: 5.399438e-03	ci right 6.410585e-03	k: 530	n:90000
Cons ci ratio: 3.674336e-02	ci left: 1.102001e-01	ci right 1.143360e-01	k: 10103	n:90000
KS ci ratio: 1.378879e-01	ci left: 8.285989e-03	ci right 9.523753e-03	k: 800	n:90000
OLAH   90000 perm   20 sec   (4488 perm/sec)   p_kst 8.888889e-03   p_cons 1.122556e-01   p_joint 5.888889e-03

Joint ci ratio: 1.278727e-01	ci left: 8.714343e-03	ci right 9.914376e-03	k: 930	n:100000
Cons ci ratio: 3.492210e-02	ci left: 1.099425e-01	ci right 1.138601e-01	k: 11189	n:100000
KS ci ratio: 1.305901e-01	ci left: 8.346525e-03	ci right 9.522224e-03	k: 892	n:100000
OLAH   100000 perm   23 sec   (4408 perm/sec)   p_kst 8.920000e-03   p_cons 1.118900e-01   p_joint 9.300000e-03

Joint ci ratio: 1.319155e-01	ci left: 7.438047e-03	ci right 8.497233e-03	k: 875	n:110000
Cons ci ratio: 3.334422e-02	ci left: 1.097540e-01	ci right 1.134847e-01	k: 12277	n:110000
KS ci ratio: 1.238341e-01	ci left: 8.467956e-03	ci right 9.594523e-03	k: 992	n:110000
OLAH   110000 perm   25 sec   (4333 perm/sec)   p_kst 9.018182e-03   p_cons 1.116091e-01   p_joint 7.954545e-03

Joint ci ratio: 1.211432e-01	ci left: 8.125714e-03	ci right 9.181570e-03	k: 1037	n:120000
Cons ci ratio: 3.183403e-02	ci left: 1.103947e-01	ci right 1.139741e-01	k: 13461	n:120000
KS ci ratio: 1.184669e-01	ci left: 8.505741e-03	ci right 9.584853e-03	k: 1084	n:120000
OLAH   120000 perm   28 sec   (4261 perm/sec)   p_kst 9.033333e-03   p_cons 1.121750e-01   p_joint 8.641667e-03

Joint ci ratio: 1.161046e-01	ci left: 8.187372e-03	ci right 9.203956e-03	k: 1129	n:130000
Cons ci ratio: 3.058259e-02	ci left: 1.104815e-01	ci right 1.139204e-01	k: 14585	n:130000
KS ci ratio: 1.133540e-01	ci left: 8.598410e-03	ci right 9.639048e-03	k: 1184	n:130000
OLAH   130000 perm   31 sec   (4193 perm/sec)   p_kst 9.107692e-03   p_cons 1.121923e-01   p_joint 8.684615e-03

Joint ci ratio: 1.162967e-01	ci left: 7.581616e-03	ci right 8.524645e-03	k: 1126	n:140000
Cons ci ratio: 2.944164e-02	ci left: 1.107357e-01	ci right 1.140518e-01	k: 15734	n:140000
KS ci ratio: 1.094539e-01	ci left: 8.581404e-03	ci right 9.581945e-03	k: 1270	n:140000
OLAH   140000 perm   34 sec   (4126 perm/sec)   p_kst 9.071429e-03   p_cons 1.123857e-01   p_joint 8.042857e-03

Joint ci ratio: 9.425337e-02	ci left: 1.086238e-02	ci right 1.194330e-02	k: 1709	n:150000
Cons ci ratio: 2.845752e-02	ci left: 1.106931e-01	ci right 1.138952e-01	k: 16843	n:150000
KS ci ratio: 1.101448e-01	ci left: 7.911905e-03	ci right 8.840582e-03	k: 1255	n:150000
OLAH   150000 perm   37 sec   (4038 perm/sec)   p_kst 8.366667e-03   p_cons 1.122867e-01   p_joint 1.139333e-02

Joint ci ratio: 8.510121e-02	ci left: 1.253022e-02	ci right 1.365003e-02	k: 2093	n:160000
Cons ci ratio: 2.755383e-02	ci left: 1.107444e-01	ci right 1.138447e-01	k: 17966	n:160000
KS ci ratio: 1.067974e-01	ci left: 7.903845e-03	ci right 8.801607e-03	k: 1335	n:160000
OLAH   160000 perm   40 sec   (3977 perm/sec)   p_kst 8.343750e-03   p_cons 1.122875e-01   p_joint 1.308125e-02

Joint ci ratio: 8.019859e-02	ci left: 1.330270e-02	ci right 1.441985e-02	k: 2355	n:170000
Cons ci ratio: 2.673030e-02	ci left: 1.107969e-01	ci right 1.138045e-01	k: 19090	n:170000
KS ci ratio: 1.037378e-01	ci left: 7.897110e-03	ci right 8.766841e-03	k: 1415	n:170000
OLAH   170000 perm   43 sec   (3918 perm/sec)   p_kst 8.323529e-03   p_cons 1.122941e-01   p_joint 1.385294e-02

Joint ci ratio: 8.268250e-02	ci left: 1.182311e-02	ci right 1.284824e-02	k: 2219	n:180000
Cons ci ratio: 2.598660e-02	ci left: 1.107675e-01	ci right 1.136894e-01	k: 20200	n:180000
KS ci ratio: 1.007572e-01	ci left: 7.918533e-03	ci right 8.764084e-03	k: 1500	n:180000
OLAH   180000 perm   47 sec   (3861 perm/sec)   p_kst 8.333333e-03   p_cons 1.122222e-01   p_joint 1.232778e-02

Joint ci ratio: 8.143857e-02	ci left: 1.155648e-02	ci right 1.254270e-02	k: 2288	n:190000
Cons ci ratio: 2.529770e-02	ci left: 1.107737e-01	ci right 1.136171e-01	k: 21316	n:190000
KS ci ratio: 9.805082e-02	ci left: 7.932885e-03	ci right 8.755906e-03	k: 1584	n:190000
OLAH   190000 perm   50 sec   (3806 perm/sec)   p_kst 8.336842e-03   p_cons 1.121895e-01   p_joint 1.204211e-02

Outputting figure to mutsig2_images.part000000000119/OLAH.7_989_190000_0.0083368_0.11219_0.012042.png
                gene_name: OLAH
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.0083 
        ci_ks_bounds_left: 0.0079 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 31 percent done.
OPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
Cons ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
KS ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
OPN5   10000 perm   2 sec   (5709 perm/sec)   p_kst 5.240000e-02   p_cons 1.660000e-01   p_joint 9.810000e-02

Joint ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
Cons ci ratio: 6.158476e-02	ci left: 1.632371e-01	ci right 1.736594e-01	k: 3368	n:20000
KS ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
OPN5   20000 perm   4 sec   (5103 perm/sec)   p_kst 5.040000e-02   p_cons 1.684000e-01   p_joint 9.250000e-02

Joint ci ratio: 7.364037e-02	ci left: 8.311316e-02	ci right 8.950055e-02	k: 2588	n:30000
Cons ci ratio: 5.049744e-02	ci left: 1.630261e-01	ci right 1.715051e-01	k: 5017	n:30000
KS ci ratio: 9.614550e-02	ci left: 4.997038e-02	ci right 5.505005e-02	k: 1574	n:30000
OPN5   30000 perm   6 sec   (4882 perm/sec)   p_kst 5.246667e-02   p_cons 1.672333e-01   p_joint 8.626667e-02

Outputting figure to mutsig2_images.part000000000119/OPN5.7_1093_30000_0.052467_0.16723_0.086267.png
                gene_name: OPN5
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.090 

Current progress: 33 percent done.
OCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 4.267935e-02	ci left: 4.476992e-01	ci right 4.673255e-01	k: 4575	n:10000
OCRL   10000 perm   2 sec   (5166 perm/sec)   p_kst 4.575000e-01   p_cons 8.315000e-01   p_joint 5.978000e-01

Outputting figure to mutsig2_images.part000000000119/OCRL.6_2802_10000_0.4575_0.8315_0.5978.png
                gene_name: OCRL
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
OGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
KS ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
OGT   10000 perm   2 sec   (5048 perm/sec)   p_kst 8.380000e-01   p_cons 5.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OGT.6_3229_10000_0.838_0.5066_1.png
                gene_name: OGT
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
OPCML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
Cons ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
OPCML   10000 perm   2 sec   (5929 perm/sec)   p_kst 2.810000e-02   p_cons 7.210000e-01   p_joint 1.370000e-01

Joint ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
Cons ci ratio: 1.684647e-02	ci left: 7.240408e-01	ci right 7.363922e-01	k: 14605	n:20000
KS ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
OPCML   20000 perm   4 sec   (5200 perm/sec)   p_kst 2.880000e-02   p_cons 7.302500e-01   p_joint 6.495000e-02

Joint ci ratio: 6.763280e-02	ci left: 9.728399e-02	ci right 1.041269e-01	k: 3020	n:30000
Cons ci ratio: 1.375109e-02	ci left: 7.253062e-01	ci right 7.353825e-01	k: 21911	n:30000
KS ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
OPCML   30000 perm   6 sec   (4726 perm/sec)   p_kst 2.776667e-02   p_cons 7.303667e-01   p_joint 1.006667e-01

Joint ci ratio: 5.630585e-02	ci left: 1.050237e-01	ci right 1.111333e-01	k: 4322	n:40000
Cons ci ratio: 1.192822e-02	ci left: 7.253438e-01	ci right 7.340728e-01	k: 29189	n:40000
KS ci ratio: 1.140215e-01	ci left: 2.706128e-02	ci right 3.035761e-02	k: 1147	n:40000
OPCML   40000 perm   9 sec   (4705 perm/sec)   p_kst 2.867500e-02   p_cons 7.297250e-01   p_joint 1.080500e-01

Joint ci ratio: 5.645677e-02	ci left: 8.545185e-02	ci right 9.043611e-02	k: 4396	n:50000
Cons ci ratio: 1.063717e-02	ci left: 7.269894e-01	ci right 7.347838e-01	k: 36545	n:50000
KS ci ratio: 1.027609e-01	ci left: 2.682491e-02	ci right 2.975020e-02	k: 1413	n:50000
OPCML   50000 perm   11 sec   (4664 perm/sec)   p_kst 2.826000e-02   p_cons 7.309000e-01   p_joint 8.792000e-02

Joint ci ratio: 5.681111e-02	ci left: 7.142429e-02	ci right 7.561707e-02	k: 4410	n:60000
Cons ci ratio: 9.681991e-03	ci left: 7.284867e-01	ci right 7.355908e-01	k: 43923	n:60000
KS ci ratio: 9.420253e-02	ci left: 2.672707e-02	ci right 2.938551e-02	k: 1682	n:60000
OPCML   60000 perm   13 sec   (4604 perm/sec)   p_kst 2.803333e-02   p_cons 7.320500e-01   p_joint 7.350000e-02

Outputting figure to mutsig2_images.part000000000119/OPCML.6_1131_60000_0.028033_0.73205_0.0735.png
                gene_name: OPCML
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 39 percent done.
OPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
KS ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
OPHN1   10000 perm   2 sec   (5113 perm/sec)   p_kst 6.112000e-01   p_cons 8.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPHN1.6_2501_10000_0.6112_0.8479_1.png
                gene_name: OPHN1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
OAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
Cons ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
OAS3   10000 perm   2 sec   (5263 perm/sec)   p_kst 5.910000e-02   p_cons 3.188000e-01   p_joint 9.230000e-02

Joint ci ratio: 1.097596e-01	ci left: 5.665039e-02	ci right 6.327826e-02	k: 1198	n:20000
Cons ci ratio: 4.077599e-02	ci left: 3.095589e-01	ci right 3.224946e-01	k: 6320	n:20000
KS ci ratio: 1.101019e-01	ci left: 5.630945e-02	ci right 6.291930e-02	k: 1191	n:20000
OAS3   20000 perm   4 sec   (4724 perm/sec)   p_kst 5.955000e-02   p_cons 3.160000e-01   p_joint 5.990000e-02

Joint ci ratio: 8.035231e-02	ci left: 7.053909e-02	ci right 7.647716e-02	k: 2204	n:30000
Cons ci ratio: 3.311082e-02	ci left: 3.131296e-01	ci right 3.237056e-01	k: 9552	n:30000
KS ci ratio: 9.008614e-02	ci left: 5.668609e-02	ci right 6.206630e-02	k: 1780	n:30000
OAS3   30000 perm   7 sec   (4530 perm/sec)   p_kst 5.933333e-02   p_cons 3.184000e-01   p_joint 7.346667e-02

Outputting figure to mutsig2_images.part000000000119/OAS3.5_3328_30000_0.059333_0.3184_0.073467.png
                gene_name: OAS3
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 43 percent done.
OPLAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
Cons ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
KS ci ratio: 1.704638e-02	ci left: 8.336838e-01	ci right 8.481171e-01	k: 8410	n:10000
OPLAH   10000 perm   2 sec   (5086 perm/sec)   p_kst 8.410000e-01   p_cons 3.212000e-01   p_joint 8.013000e-01

Outputting figure to mutsig2_images.part000000000119/OPLAH.5_3973_10000_0.841_0.3212_0.8013.png
                gene_name: OPLAH
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 44 percent done.
OPRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
Cons ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
KS ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
OPRK1   10000 perm   2 sec   (6085 perm/sec)   p_kst 2.902000e-01   p_cons 8.522000e-01   p_joint 4.333000e-01

Outputting figure to mutsig2_images.part000000000119/OPRK1.5_1155_10000_0.2902_0.8522_0.4333.png
                gene_name: OPRK1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
OPRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
OPRL1   10000 perm   2 sec   (5589 perm/sec)   p_kst 4.867000e-01   p_cons 7.101000e-01   p_joint 6.503000e-01

Outputting figure to mutsig2_images.part000000000119/OPRL1.5_1125_10000_0.4867_0.7101_0.6503.png
                gene_name: OPRL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 48 percent done.
OPTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
KS ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
OPTC   10000 perm   2 sec   (6094 perm/sec)   p_kst 3.300000e-02   p_cons 7.354000e-01   p_joint 8.060000e-02

Joint ci ratio: 9.727235e-02	ci left: 7.143550e-02	ci right 7.878860e-02	k: 1501	n:20000
Cons ci ratio: 1.671183e-02	ci left: 7.272132e-01	ci right 7.395189e-01	k: 14668	n:20000
KS ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
OPTC   20000 perm   4 sec   (5432 perm/sec)   p_kst 3.275000e-02   p_cons 7.334000e-01   p_joint 7.505000e-02

Joint ci ratio: 8.723155e-02	ci left: 6.030907e-02	ci right 6.584259e-02	k: 1891	n:30000
Cons ci ratio: 1.324661e-02	ci left: 7.398599e-01	ci right 7.497593e-01	k: 22345	n:30000
KS ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
OPTC   30000 perm   6 sec   (5117 perm/sec)   p_kst 3.213333e-02   p_cons 7.448333e-01   p_joint 6.303333e-02

Joint ci ratio: 7.771608e-02	ci left: 5.747128e-02	ci right 6.214288e-02	k: 2391	n:40000
Cons ci ratio: 1.140729e-02	ci left: 7.426842e-01	ci right 7.512299e-01	k: 29879	n:40000
KS ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
OPTC   40000 perm   8 sec   (4900 perm/sec)   p_kst 3.220000e-02   p_cons 7.469750e-01   p_joint 5.977500e-02

Joint ci ratio: 6.534538e-02	ci left: 6.494186e-02	ci right 6.934856e-02	k: 3356	n:50000
Cons ci ratio: 1.083255e-02	ci left: 7.197375e-01	ci right 7.275965e-01	k: 36184	n:50000
KS ci ratio: 9.498651e-02	ci left: 3.137321e-02	ci right 3.452132e-02	k: 1646	n:50000
OPTC   50000 perm   10 sec   (4811 perm/sec)   p_kst 3.292000e-02   p_cons 7.236800e-01   p_joint 6.712000e-02

Outputting figure to mutsig2_images.part000000000119/OPTC.5_1023_50000_0.03292_0.72368_0.06712.png
                gene_name: OPTC
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 50 percent done.
OAS2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
Cons ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
KS ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
OAS2   10000 perm   2 sec   (5885 perm/sec)   p_kst 5.207000e-01   p_cons 2.707000e-01   p_joint 5.442000e-01

Outputting figure to mutsig2_images.part000000000119/OAS2.3_2290_10000_0.5207_0.2707_0.5442.png
                gene_name: OAS2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 52 percent done.
ODAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
ODAM   10000 perm   2 sec   (6279 perm/sec)   p_kst 4.193000e-01   p_cons 5.000000e-04   p_joint 1.030000e-02

Joint ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
Cons ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
KS ci ratio: 3.266398e-02	ci left: 4.117502e-01	ci right 4.254735e-01	k: 8372	n:20000
ODAM   20000 perm   4 sec   (5323 perm/sec)   p_kst 4.186000e-01   p_cons 4.500000e-04   p_joint 7.300000e-03

Joint ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
Cons ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
KS ci ratio: 2.675870e-02	ci left: 4.114122e-01	ci right 4.226039e-01	k: 12510	n:30000
ODAM   30000 perm   6 sec   (5188 perm/sec)   p_kst 4.170000e-01   p_cons 5.666667e-04   p_joint 2.866667e-03

Joint ci ratio: 1.466451e-01	ci left: 1.626171e-02	ci right 1.885900e-02	k: 701	n:40000
Cons ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
KS ci ratio: 2.318957e-02	ci left: 4.118373e-01	ci right 4.215248e-01	k: 16667	n:40000
ODAM   40000 perm   8 sec   (5071 perm/sec)   p_kst 4.166750e-01   p_cons 6.750000e-04   p_joint 1.752500e-02

Joint ci ratio: 1.920904e-01	ci left: 7.466281e-03	ci right 9.071597e-03	k: 412	n:50000
Cons ci ratio: 6.927359e-01	ci left: 4.212976e-04	ci right 8.799261e-04	k: 31	n:50000
KS ci ratio: 2.095789e-02	ci left: 4.073216e-01	ci right 4.159687e-01	k: 20582	n:50000
ODAM   50000 perm   10 sec   (4955 perm/sec)   p_kst 4.116400e-01   p_cons 6.200000e-04   p_joint 8.240000e-03

Joint ci ratio: 1.799122e-01	ci left: 7.143483e-03	ci right 8.571405e-03	k: 470	n:60000
Cons ci ratio: 6.195946e-01	ci left: 4.622531e-04	ci right 8.884654e-04	k: 39	n:60000
KS ci ratio: 1.913223e-02	ci left: 4.076916e-01	ci right 4.155836e-01	k: 24698	n:60000
ODAM   60000 perm   12 sec   (4852 perm/sec)   p_kst 4.116333e-01   p_cons 6.500000e-04   p_joint 7.833333e-03

Joint ci ratio: 2.127030e-01	ci left: 4.314995e-03	ci right 5.355276e-03	k: 337	n:70000
Cons ci ratio: 5.907723e-01	ci left: 4.445962e-04	ci right 8.273506e-04	k: 43	n:70000
KS ci ratio: 1.709438e-02	ci left: 4.252866e-01	ci right 4.326336e-01	k: 30027	n:70000
ODAM   70000 perm   15 sec   (4749 perm/sec)   p_kst 4.289571e-01   p_cons 6.142857e-04   p_joint 4.814286e-03

Joint ci ratio: 2.173350e-01	ci left: 3.609897e-03	ci right 4.501661e-03	k: 323	n:80000
Cons ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
KS ci ratio: 1.598368e-02	ci left: 4.257291e-01	ci right 4.326011e-01	k: 34333	n:80000
ODAM   80000 perm   17 sec   (4658 perm/sec)   p_kst 4.291625e-01   p_cons 2.750000e-04   p_joint 4.037500e-03

Joint ci ratio: 2.465895e-01	ci left: 2.454909e-03	ci right 3.155526e-03	k: 251	n:90000
Cons ci ratio: 8.000555e-01	ci left: 1.620070e-04	ci right 3.834343e-04	k: 23	n:90000
KS ci ratio: 1.505000e-02	ci left: 4.265625e-01	ci right 4.330420e-01	k: 38682	n:90000
ODAM   90000 perm   20 sec   (4563 perm/sec)   p_kst 4.298000e-01   p_cons 2.555556e-04   p_joint 2.788889e-03

Joint ci ratio: 2.326887e-01	ci left: 2.500825e-03	ci right 3.168530e-03	k: 282	n:100000
Cons ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
KS ci ratio: 1.430425e-02	ci left: 4.258196e-01	ci right 4.319645e-01	k: 42889	n:100000
ODAM   100000 perm   22 sec   (4487 perm/sec)   p_kst 4.288900e-01   p_cons 3.000000e-04   p_joint 2.820000e-03

Joint ci ratio: 2.391592e-01	ci left: 2.145124e-03	ci right 2.736144e-03	k: 267	n:110000
Cons ci ratio: 6.928607e-01	ci left: 1.914896e-04	ci right 3.999948e-04	k: 31	n:110000
KS ci ratio: 1.373161e-02	ci left: 4.226393e-01	ci right 4.284919e-01	k: 46812	n:110000
ODAM   110000 perm   25 sec   (4413 perm/sec)   p_kst 4.255636e-01   p_cons 2.818182e-04   p_joint 2.427273e-03

Joint ci ratio: 2.365444e-01	ci left: 2.013367e-03	ci right 2.561130e-03	k: 273	n:120000
Cons ci ratio: 6.822877e-01	ci left: 1.824067e-04	ci right 3.764331e-04	k: 32	n:120000
KS ci ratio: 1.315704e-02	ci left: 4.223922e-01	ci right 4.279947e-01	k: 51023	n:120000
ODAM   120000 perm   28 sec   (4341 perm/sec)   p_kst 4.251917e-01   p_cons 2.666667e-04   p_joint 2.275000e-03

Joint ci ratio: 2.331784e-01	ci left: 1.916398e-03	ci right 2.429290e-03	k: 281	n:130000
Cons ci ratio: 6.443498e-01	ci left: 1.939608e-04	ci right 3.833579e-04	k: 36	n:130000
KS ci ratio: 1.264963e-02	ci left: 4.221646e-01	ci right 4.275465e-01	k: 55231	n:130000
ODAM   130000 perm   30 sec   (4271 perm/sec)   p_kst 4.248538e-01   p_cons 2.769231e-04   p_joint 2.161538e-03

Joint ci ratio: 2.126465e-01	ci left: 2.163998e-03	ci right 2.685524e-03	k: 338	n:140000
Cons ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
KS ci ratio: 1.222654e-02	ci left: 4.207813e-01	ci right 4.259647e-01	k: 59272	n:140000
ODAM   140000 perm   33 sec   (4205 perm/sec)   p_kst 4.233714e-01   p_cons 2.785714e-04   p_joint 2.414286e-03

Joint ci ratio: 2.111090e-01	ci left: 2.051283e-03	ci right 2.541606e-03	k: 343	n:150000
Cons ci ratio: 5.908736e-01	ci left: 2.074696e-04	ci right 3.861189e-04	k: 43	n:150000
KS ci ratio: 1.182355e-02	ci left: 4.203915e-01	ci right 4.253982e-01	k: 63434	n:150000
ODAM   150000 perm   36 sec   (4143 perm/sec)   p_kst 4.228933e-01   p_cons 2.866667e-04   p_joint 2.286667e-03

Joint ci ratio: 2.311819e-01	ci left: 1.586474e-03	ci right 2.006909e-03	k: 286	n:160000
Cons ci ratio: 5.778876e-01	ci left: 2.051528e-04	ci right 3.763167e-04	k: 45	n:160000
KS ci ratio: 1.160115e-02	ci left: 4.140079e-01	ci right 4.188451e-01	k: 66628	n:160000
ODAM   160000 perm   39 sec   (4083 perm/sec)   p_kst 4.164250e-01   p_cons 2.812500e-04   p_joint 1.787500e-03

Joint ci ratio: 2.268797e-01	ci left: 1.554142e-03	ci right 1.957272e-03	k: 297	n:170000
Cons ci ratio: 5.599176e-01	ci left: 2.081919e-04	ci right 3.743418e-04	k: 48	n:170000
KS ci ratio: 1.125672e-02	ci left: 4.139964e-01	ci right 4.186888e-01	k: 70778	n:170000
ODAM   170000 perm   42 sec   (4025 perm/sec)   p_kst 4.163412e-01   p_cons 2.823529e-04   p_joint 1.747059e-03

Joint ci ratio: 1.693827e-01	ci left: 2.715356e-03	ci right 3.223084e-03	k: 533	n:180000
Cons ci ratio: 5.284905e-01	ci left: 2.253770e-04	ci right 3.914170e-04	k: 54	n:180000
KS ci ratio: 1.094337e-02	ci left: 4.138937e-01	ci right 4.184535e-01	k: 74911	n:180000
ODAM   180000 perm   45 sec   (3965 perm/sec)   p_kst 4.161722e-01   p_cons 3.000000e-04   p_joint 2.961111e-03

Joint ci ratio: 1.800168e-01	ci left: 2.265367e-03	ci right 2.718447e-03	k: 472	n:190000
Cons ci ratio: 5.146413e-01	ci left: 2.272247e-04	ci right 3.886676e-04	k: 57	n:190000
KS ci ratio: 1.064951e-02	ci left: 4.140453e-01	ci right 4.184835e-01	k: 79090	n:190000
ODAM   190000 perm   49 sec   (3908 perm/sec)   p_kst 4.162632e-01   p_cons 3.000000e-04   p_joint 2.484211e-03

Joint ci ratio: 1.829593e-01	ci left: 2.080487e-03	ci right 2.504145e-03	k: 457	n:200000
Cons ci ratio: 4.977621e-01	ci left: 2.333086e-04	ci right 3.917683e-04	k: 61	n:200000
KS ci ratio: 1.038303e-02	ci left: 4.139535e-01	ci right 4.182790e-01	k: 83223	n:200000
ODAM   200000 perm   52 sec   (3855 perm/sec)   p_kst 4.161150e-01   p_cons 3.050000e-04   p_joint 2.285000e-03

Joint ci ratio: 1.800383e-01	ci left: 2.049596e-03	ci right 2.459575e-03	k: 472	n:210000
Cons ci ratio: 4.788267e-01	ci left: 2.430766e-04	ci right 3.998314e-04	k: 66	n:210000
KS ci ratio: 1.013063e-02	ci left: 4.141096e-01	ci right 4.183308e-01	k: 87406	n:210000
ODAM   210000 perm   55 sec   (3805 perm/sec)   p_kst 4.162190e-01   p_cons 3.142857e-04   p_joint 2.247619e-03

Joint ci ratio: 1.758143e-01	ci left: 2.056323e-03	ci right 2.456971e-03	k: 495	n:220000
Cons ci ratio: 4.684540e-01	ci left: 2.440358e-04	ci right 3.969104e-04	k: 69	n:220000
KS ci ratio: 9.893201e-03	ci left: 4.143798e-01	ci right 4.185042e-01	k: 91617	n:220000
ODAM   220000 perm   59 sec   (3753 perm/sec)   p_kst 4.164409e-01   p_cons 3.136364e-04   p_joint 2.250000e-03

Joint ci ratio: 1.850217e-01	ci left: 1.767616e-03	ci right 2.132075e-03	k: 447	n:230000
Cons ci ratio: 4.556164e-01	ci left: 2.487921e-04	ci right 3.990556e-04	k: 73	n:230000
KS ci ratio: 9.675174e-03	ci left: 4.144538e-01	ci right 4.184875e-01	k: 95788	n:230000
ODAM   230000 perm   62 sec   (3703 perm/sec)   p_kst 4.164696e-01   p_cons 3.173913e-04   p_joint 1.943478e-03

Joint ci ratio: 1.829943e-01	ci left: 1.733710e-03	ci right 2.086826e-03	k: 457	n:240000
Cons ci ratio: 4.525709e-01	ci left: 2.421155e-04	ci right 3.870690e-04	k: 74	n:240000
KS ci ratio: 9.468925e-03	ci left: 4.146266e-01	ci right 4.185754e-01	k: 99984	n:240000
ODAM   240000 perm   66 sec   (3653 perm/sec)   p_kst 4.166000e-01   p_cons 3.083333e-04   p_joint 1.904167e-03

Joint ci ratio: 1.882196e-01	ci left: 1.568994e-03	ci right 1.898729e-03	k: 432	n:250000
Cons ci ratio: 4.466558e-01	ci left: 2.395247e-04	ci right 3.804868e-04	k: 76	n:250000
KS ci ratio: 9.285638e-03	ci left: 4.142468e-01	ci right 4.181152e-01	k: 104045	n:250000
ODAM   250000 perm   69 sec   (3601 perm/sec)   p_kst 4.161800e-01   p_cons 3.040000e-04   p_joint 1.728000e-03

Joint ci ratio: 1.882259e-01	ci left: 1.508644e-03	ci right 1.825707e-03	k: 432	n:260000
Cons ci ratio: 4.409666e-01	ci left: 2.371445e-04	ci right 3.743996e-04	k: 78	n:260000
KS ci ratio: 9.111650e-03	ci left: 4.139468e-01	ci right 4.177396e-01	k: 108119	n:260000
ODAM   260000 perm   73 sec   (3553 perm/sec)   p_kst 4.158423e-01   p_cons 3.000000e-04   p_joint 1.661538e-03

Joint ci ratio: 2.033760e-01	ci left: 1.234360e-03	ci right 1.517257e-03	k: 370	n:270000
Cons ci ratio: 4.354894e-01	ci left: 2.349513e-04	ci right 3.687530e-04	k: 80	n:270000
KS ci ratio: 8.947629e-03	ci left: 4.136402e-01	ci right 4.173616e-01	k: 112185	n:270000
ODAM   270000 perm   77 sec   (3507 perm/sec)   p_kst 4.155000e-01   p_cons 2.962963e-04   p_joint 1.370370e-03

Joint ci ratio: 1.975987e-01	ci left: 1.264906e-03	ci right 1.545577e-03	k: 392	n:280000
Cons ci ratio: 4.302114e-01	ci left: 2.329245e-04	ci right 3.635001e-04	k: 82	n:280000
KS ci ratio: 8.783041e-03	ci left: 4.138593e-01	ci right 4.175138e-01	k: 116392	n:280000
ODAM   280000 perm   81 sec   (3462 perm/sec)   p_kst 4.156857e-01   p_cons 2.928571e-04   p_joint 1.400000e-03

Joint ci ratio: 1.932219e-01	ci left: 1.280322e-03	ci right 1.557382e-03	k: 410	n:290000
Cons ci ratio: 4.178093e-01	ci left: 2.402945e-04	ci right 3.700359e-04	k: 87	n:290000
KS ci ratio: 8.629661e-03	ci left: 4.139261e-01	ci right 4.175170e-01	k: 120559	n:290000
ODAM   290000 perm   85 sec   (3410 perm/sec)   p_kst 4.157207e-01   p_cons 3.000000e-04   p_joint 1.413793e-03

Joint ci ratio: 1.904622e-01	ci left: 1.275723e-03	ci right 1.547388e-03	k: 422	n:300000
Cons ci ratio: 4.131416e-01	ci left: 2.382543e-04	ci right 3.650614e-04	k: 89	n:300000
KS ci ratio: 8.485152e-03	ci left: 4.139256e-01	ci right 4.174560e-01	k: 124707	n:300000
ODAM   300000 perm   89 sec   (3369 perm/sec)   p_kst 4.156900e-01   p_cons 2.966667e-04   p_joint 1.406667e-03

Joint ci ratio: 2.076399e-01	ci left: 1.029179e-03	ci right 1.270625e-03	k: 355	n:310000
Cons ci ratio: 4.108667e-01	ci left: 2.334599e-04	ci right 3.568439e-04	k: 90	n:310000
KS ci ratio: 8.345507e-03	ci left: 4.140513e-01	ci right 4.175244e-01	k: 128894	n:310000
ODAM   310000 perm   93 sec   (3329 perm/sec)   p_kst 4.157871e-01   p_cons 2.903226e-04   p_joint 1.145161e-03

Joint ci ratio: 1.554058e-01	ci left: 1.830146e-03	ci right 2.141484e-03	k: 634	n:320000
Cons ci ratio: 4.000227e-01	ci left: 2.401960e-04	ci right 3.629023e-04	k: 95	n:320000
KS ci ratio: 8.214860e-03	ci left: 4.140322e-01	ci right 4.174505e-01	k: 133037	n:320000
ODAM   320000 perm   97 sec   (3291 perm/sec)   p_kst 4.157406e-01   p_cons 2.968750e-04   p_joint 1.981250e-03

Joint ci ratio: 1.532494e-01	ci left: 1.827126e-03	ci right 2.133241e-03	k: 652	n:330000
Cons ci ratio: 3.880773e-01	ci left: 2.492981e-04	ci right 3.718791e-04	k: 101	n:330000
KS ci ratio: 8.087439e-03	ci left: 4.141782e-01	ci right 4.175445e-01	k: 137234	n:330000
ODAM   330000 perm   101 sec   (3254 perm/sec)   p_kst 4.158606e-01   p_cons 3.060606e-04   p_joint 1.975758e-03

Joint ci ratio: 1.564051e-01	ci left: 1.699870e-03	ci right 1.991079e-03	k: 626	n:340000
Cons ci ratio: 3.771417e-01	ci left: 2.579160e-04	ci right 3.802774e-04	k: 107	n:340000
KS ci ratio: 7.961141e-03	ci left: 4.145982e-01	ci right 4.179150e-01	k: 141527	n:340000
ODAM   340000 perm   106 sec   (3211 perm/sec)   p_kst 4.162559e-01   p_cons 3.147059e-04   p_joint 1.841176e-03

Joint ci ratio: 1.555418e-01	ci left: 1.670519e-03	ci right 1.954973e-03	k: 633	n:350000
Cons ci ratio: 3.754089e-01	ci left: 2.531338e-04	ci right 3.725387e-04	k: 108	n:350000
KS ci ratio: 7.848136e-03	ci left: 4.145263e-01	ci right 4.177951e-01	k: 145656	n:350000
ODAM   350000 perm   110 sec   (3174 perm/sec)   p_kst 4.161600e-01   p_cons 3.085714e-04   p_joint 1.808571e-03

Joint ci ratio: 1.551784e-01	ci left: 1.632123e-03	ci right 1.909329e-03	k: 636	n:360000
Cons ci ratio: 3.754105e-01	ci left: 2.461021e-04	ci right 3.621907e-04	k: 108	n:360000
KS ci ratio: 7.743527e-03	ci left: 4.142254e-01	ci right 4.174482e-01	k: 149701	n:360000
ODAM   360000 perm   115 sec   (3138 perm/sec)   p_kst 4.158361e-01   p_cons 3.000000e-04   p_joint 1.766667e-03

Joint ci ratio: 1.551821e-01	ci left: 1.588009e-03	ci right 1.857729e-03	k: 636	n:370000
Cons ci ratio: 3.754121e-01	ci left: 2.394505e-04	ci right 3.524021e-04	k: 108	n:370000
KS ci ratio: 7.635041e-03	ci left: 4.144462e-01	ci right 4.176253e-01	k: 153933	n:370000
ODAM   370000 perm   119 sec   (3102 perm/sec)   p_kst 4.160351e-01   p_cons 2.918919e-04   p_joint 1.718919e-03

Joint ci ratio: 1.278343e-01	ci left: 2.310591e-03	ci right 2.628651e-03	k: 937	n:380000
Cons ci ratio: 3.703501e-01	ci left: 2.403041e-04	ci right 3.517596e-04	k: 111	n:380000
KS ci ratio: 7.530989e-03	ci left: 4.146557e-01	ci right 4.177929e-01	k: 158165	n:380000
ODAM   380000 perm   124 sec   (3068 perm/sec)   p_kst 4.162237e-01   p_cons 2.921053e-04   p_joint 2.465789e-03

Joint ci ratio: 1.271607e-01	ci left: 2.276165e-03	ci right 2.587711e-03	k: 947	n:390000
Cons ci ratio: 3.623493e-01	ci left: 2.457831e-04	ci right 3.567354e-04	k: 116	n:390000
KS ci ratio: 7.431938e-03	ci left: 4.147984e-01	ci right 4.178952e-01	k: 162375	n:390000
ODAM   390000 perm   129 sec   (3034 perm/sec)   p_kst 4.163462e-01   p_cons 2.974359e-04   p_joint 2.428205e-03

Joint ci ratio: 1.269634e-01	ci left: 2.226519e-03	ci right 2.530761e-03	k: 950	n:400000
Cons ci ratio: 3.577913e-01	ci left: 2.464601e-04	ci right 3.559927e-04	k: 119	n:400000
KS ci ratio: 7.336432e-03	ci left: 4.149516e-01	ci right 4.180096e-01	k: 166592	n:400000
ODAM   400000 perm   133 sec   (3001 perm/sec)   p_kst 4.164800e-01   p_cons 2.975000e-04   p_joint 2.375000e-03

Joint ci ratio: 1.253266e-01	ci left: 2.231266e-03	ci right 2.531934e-03	k: 975	n:410000
Cons ci ratio: 3.534010e-01	ci left: 2.471123e-04	ci right 3.552780e-04	k: 122	n:410000
KS ci ratio: 7.247750e-03	ci left: 4.148807e-01	ci right 4.179010e-01	k: 170720	n:410000
ODAM   410000 perm   138 sec   (2968 perm/sec)   p_kst 4.163902e-01   p_cons 2.975610e-04   p_joint 2.378049e-03

Joint ci ratio: 1.251375e-01	ci left: 2.185056e-03	ci right 2.479020e-03	k: 978	n:420000
Cons ci ratio: 3.534023e-01	ci left: 2.412286e-04	ci right 3.468192e-04	k: 122	n:420000
KS ci ratio: 7.162734e-03	ci left: 4.147776e-01	ci right 4.177616e-01	k: 174833	n:420000
ODAM   420000 perm   143 sec   (2937 perm/sec)   p_kst 4.162690e-01   p_cons 2.904762e-04   p_joint 2.328571e-03

Joint ci ratio: 1.303122e-01	ci left: 1.963127e-03	ci right 2.239000e-03	k: 902	n:430000
Cons ci ratio: 3.505641e-01	ci left: 2.398585e-04	ci right 3.438145e-04	k: 124	n:430000
KS ci ratio: 7.079116e-03	ci left: 4.147842e-01	ci right 4.177332e-01	k: 178991	n:430000
ODAM   430000 perm   148 sec   (2906 perm/sec)   p_kst 4.162581e-01   p_cons 2.883721e-04   p_joint 2.097674e-03

Joint ci ratio: 1.290330e-01	ci left: 1.958092e-03	ci right 2.230350e-03	k: 920	n:440000
Cons ci ratio: 3.464315e-01	ci left: 2.406286e-04	ci right 3.434131e-04	k: 127	n:440000
KS ci ratio: 6.999145e-03	ci left: 4.147361e-01	ci right 4.176513e-01	k: 183125	n:440000
ODAM   440000 perm   153 sec   (2877 perm/sec)   p_kst 4.161932e-01   p_cons 2.886364e-04   p_joint 2.090909e-03

Joint ci ratio: 1.279273e-01	ci left: 1.948991e-03	ci right 2.217485e-03	k: 936	n:450000
Cons ci ratio: 3.450869e-01	ci left: 2.373105e-04	ci right 3.381963e-04	k: 128	n:450000
KS ci ratio: 6.920970e-03	ci left: 4.147503e-01	ci right 4.176330e-01	k: 187286	n:450000
ODAM   450000 perm   158 sec   (2848 perm/sec)   p_kst 4.161911e-01   p_cons 2.844444e-04   p_joint 2.080000e-03

Joint ci ratio: 1.258608e-01	ci left: 1.971875e-03	ci right 2.238806e-03	k: 967	n:460000
Cons ci ratio: 3.385867e-01	ci left: 2.420883e-04	ci right 3.426431e-04	k: 133	n:460000
KS ci ratio: 6.845204e-03	ci left: 4.147750e-01	ci right 4.176261e-01	k: 191452	n:460000
ODAM   460000 perm   163 sec   (2820 perm/sec)   p_kst 4.162000e-01   p_cons 2.891304e-04   p_joint 2.102174e-03

Joint ci ratio: 1.248976e-01	ci left: 1.960834e-03	ci right 2.224088e-03	k: 982	n:470000
Cons ci ratio: 3.360882e-01	ci left: 2.408324e-04	ci right 3.399673e-04	k: 135	n:470000
KS ci ratio: 6.772348e-03	ci left: 4.147647e-01	ci right 4.175853e-01	k: 195602	n:470000
ODAM   470000 perm   168 sec   (2791 perm/sec)   p_kst 4.161745e-01   p_cons 2.872340e-04   p_joint 2.089362e-03

Joint ci ratio: 1.237700e-01	ci left: 1.956316e-03	ci right 2.216419e-03	k: 1000	n:480000
Cons ci ratio: 3.324416e-01	ci left: 2.415405e-04	ci right 3.396572e-04	k: 138	n:480000
KS ci ratio: 6.701166e-03	ci left: 4.147987e-01	ci right 4.175898e-01	k: 199773	n:480000
ODAM   480000 perm   174 sec   (2763 perm/sec)   p_kst 4.161937e-01   p_cons 2.875000e-04   p_joint 2.083333e-03

Joint ci ratio: 1.229750e-01	ci left: 1.942102e-03	ci right 2.198536e-03	k: 1013	n:490000
Cons ci ratio: 3.289111e-01	ci left: 2.422254e-04	ci right 3.393544e-04	k: 141	n:490000
KS ci ratio: 6.630651e-03	ci left: 4.149437e-01	ci right 4.177062e-01	k: 203999	n:490000
ODAM   490000 perm   179 sec   (2734 perm/sec)   p_kst 4.163245e-01   p_cons 2.877551e-04   p_joint 2.067347e-03

Joint ci ratio: 1.241485e-01	ci left: 1.866430e-03	ci right 2.115397e-03	k: 994	n:500000
Cons ci ratio: 3.232683e-01	ci left: 2.465625e-04	ci right 3.433828e-04	k: 146	n:500000
KS ci ratio: 6.565313e-03	ci left: 4.148612e-01	ci right 4.175958e-01	k: 208114	n:500000
ODAM   500000 perm   185 sec   (2707 perm/sec)   p_kst 4.162280e-01   p_cons 2.920000e-04   p_joint 1.988000e-03

Joint ci ratio: 1.229193e-01	ci left: 1.867837e-03	ci right 2.114346e-03	k: 1014	n:510000
Cons ci ratio: 3.232692e-01	ci left: 2.417278e-04	ci right 3.366500e-04	k: 146	n:510000
KS ci ratio: 6.499902e-03	ci left: 4.149290e-01	ci right 4.176367e-01	k: 212304	n:510000
ODAM   510000 perm   190 sec   (2680 perm/sec)   p_kst 4.162824e-01   p_cons 2.862745e-04   p_joint 1.988235e-03

Joint ci ratio: 1.219030e-01	ci left: 1.863609e-03	ci right 2.107378e-03	k: 1031	n:520000
Cons ci ratio: 3.179072e-01	ci left: 2.459211e-04	ci right 3.405623e-04	k: 151	n:520000
KS ci ratio: 6.438268e-03	ci left: 4.148540e-01	ci right 4.175354e-01	k: 216421	n:520000
ODAM   520000 perm   196 sec   (2654 perm/sec)   p_kst 4.161942e-01   p_cons 2.903846e-04   p_joint 1.982692e-03

Joint ci ratio: 1.237822e-01	ci left: 1.771748e-03	ci right 2.007336e-03	k: 1000	n:530000
Cons ci ratio: 3.148156e-01	ci left: 2.464921e-04	ci right 3.402449e-04	k: 154	n:530000
KS ci ratio: 6.377264e-03	ci left: 4.148649e-01	ci right 4.175209e-01	k: 220582	n:530000
ODAM   530000 perm   202 sec   (2627 perm/sec)   p_kst 4.161925e-01   p_cons 2.905660e-04   p_joint 1.886792e-03

Joint ci ratio: 1.259457e-01	ci left: 1.677936e-03	ci right 1.905241e-03	k: 966	n:540000
Cons ci ratio: 3.128043e-01	ci left: 2.453394e-04	ci right 3.379385e-04	k: 156	n:540000
KS ci ratio: 6.316782e-03	ci left: 4.149662e-01	ci right 4.175976e-01	k: 224792	n:540000
ODAM   540000 perm   208 sec   (2602 perm/sec)   p_kst 4.162815e-01   p_cons 2.888889e-04   p_joint 1.788889e-03

Joint ci ratio: 1.257525e-01	ci left: 1.652709e-03	ci right 1.876228e-03	k: 969	n:550000
Cons ci ratio: 3.088938e-01	ci left: 2.475842e-04	ci right 3.396324e-04	k: 160	n:550000
KS ci ratio: 6.259581e-03	ci left: 4.149404e-01	ci right 4.175477e-01	k: 228934	n:550000
ODAM   550000 perm   213 sec   (2577 perm/sec)   p_kst 4.162436e-01   p_cons 2.909091e-04   p_joint 1.761818e-03

Joint ci ratio: 1.249824e-01	ci left: 1.643953e-03	ci right 1.864824e-03	k: 981	n:560000
Cons ci ratio: 3.069931e-01	ci left: 2.464586e-04	ci right 3.374141e-04	k: 162	n:560000
KS ci ratio: 6.203975e-03	ci left: 4.149103e-01	ci right 4.174941e-01	k: 233073	n:560000
ODAM   560000 perm   219 sec   (2554 perm/sec)   p_kst 4.162018e-01   p_cons 2.892857e-04   p_joint 1.751786e-03

Joint ci ratio: 1.243517e-01	ci left: 1.632108e-03	ci right 1.850200e-03	k: 991	n:570000
Cons ci ratio: 3.051271e-01	ci left: 2.453740e-04	ci right 3.352720e-04	k: 164	n:570000
KS ci ratio: 6.151868e-03	ci left: 4.147200e-01	ci right 4.172809e-01	k: 237120	n:570000
ODAM   570000 perm   225 sec   (2530 perm/sec)   p_kst 4.160000e-01   p_cons 2.877193e-04   p_joint 1.738596e-03

Joint ci ratio: 1.249862e-01	ci left: 1.587262e-03	ci right 1.800524e-03	k: 981	n:580000
Cons ci ratio: 3.042072e-01	ci left: 2.427357e-04	ci right 3.313470e-04	k: 165	n:580000
KS ci ratio: 6.097025e-03	ci left: 4.148569e-01	ci right 4.173957e-01	k: 241353	n:580000
ODAM   580000 perm   231 sec   (2507 perm/sec)   p_kst 4.161259e-01   p_cons 2.844828e-04   p_joint 1.691379e-03

Joint ci ratio: 1.241050e-01	ci left: 1.583348e-03	ci right 1.794474e-03	k: 995	n:590000
Cons ci ratio: 3.023912e-01	ci left: 2.417535e-04	ci right 3.293780e-04	k: 167	n:590000
KS ci ratio: 6.046490e-03	ci left: 4.147588e-01	ci right 4.172759e-01	k: 245450	n:590000
ODAM   590000 perm   237 sec   (2484 perm/sec)   p_kst 4.160169e-01   p_cons 2.830508e-04   p_joint 1.686441e-03

Joint ci ratio: 1.231811e-01	ci left: 1.581186e-03	ci right 1.790339e-03	k: 1010	n:600000
Cons ci ratio: 3.006074e-01	ci left: 2.408054e-04	ci right 3.274731e-04	k: 169	n:600000
KS ci ratio: 5.994928e-03	ci left: 4.148474e-01	ci right 4.173434e-01	k: 249657	n:600000
ODAM   600000 perm   244 sec   (2462 perm/sec)   p_kst 4.160950e-01   p_cons 2.816667e-04   p_joint 1.683333e-03

Joint ci ratio: 1.225169e-01	ci left: 1.572743e-03	ci right 1.779577e-03	k: 1021	n:610000
Cons ci ratio: 3.006081e-01	ci left: 2.368577e-04	ci right 3.221048e-04	k: 169	n:610000
KS ci ratio: 5.944201e-03	ci left: 4.149708e-01	ci right 4.174464e-01	k: 253887	n:610000
ODAM   610000 perm   250 sec   (2440 perm/sec)   p_kst 4.162082e-01   p_cons 2.770492e-04   p_joint 1.673770e-03

Joint ci ratio: 1.337339e-01	ci left: 1.291309e-03	ci right 1.477916e-03	k: 857	n:620000
Cons ci ratio: 2.979903e-01	ci left: 2.375129e-04	ci right 3.221105e-04	k: 172	n:620000
KS ci ratio: 5.894663e-03	ci left: 4.150968e-01	ci right 4.175524e-01	k: 258121	n:620000
ODAM   620000 perm   256 sec   (2418 perm/sec)   p_kst 4.163242e-01   p_cons 2.774194e-04   p_joint 1.382258e-03

Joint ci ratio: 1.321259e-01	ci left: 1.303038e-03	ci right 1.488898e-03	k: 878	n:630000
Cons ci ratio: 2.962828e-01	ci left: 2.366808e-04	ci right 3.204083e-04	k: 174	n:630000
KS ci ratio: 5.846685e-03	ci left: 4.151902e-01	ci right 4.176264e-01	k: 262337	n:630000
ODAM   630000 perm   263 sec   (2396 perm/sec)   p_kst 4.164079e-01   p_cons 2.761905e-04   p_joint 1.393651e-03

Joint ci ratio: 1.084436e-01	ci left: 1.926983e-03	ci right 2.149438e-03	k: 1303	n:640000
Cons ci ratio: 2.954403e-01	ci left: 2.344292e-04	ci right 3.170801e-04	k: 175	n:640000
KS ci ratio: 5.825704e-03	ci left: 4.131224e-01	ci right 4.155377e-01	k: 265171	n:640000
ODAM   640000 perm   269 sec   (2375 perm/sec)   p_kst 4.143297e-01   p_cons 2.734375e-04   p_joint 2.035937e-03

Joint ci ratio: 1.122160e-01	ci left: 1.768671e-03	ci right 1.980423e-03	k: 1217	n:650000
Cons ci ratio: 2.929540e-01	ci left: 2.350974e-04	ci right 3.171569e-04	k: 178	n:650000
KS ci ratio: 5.780906e-03	ci left: 4.131159e-01	ci right 4.155125e-01	k: 269304	n:650000
ODAM   650000 perm   276 sec   (2354 perm/sec)   p_kst 4.143138e-01   p_cons 2.738462e-04   p_joint 1.872308e-03

Joint ci ratio: 1.125886e-01	ci left: 1.730091e-03	ci right 1.937957e-03	k: 1209	n:660000
Cons ci ratio: 2.929546e-01	ci left: 2.315352e-04	ci right 3.123516e-04	k: 178	n:660000
KS ci ratio: 5.736123e-03	ci left: 4.131945e-01	ci right 4.155729e-01	k: 273493	n:660000
ODAM   660000 perm   283 sec   (2333 perm/sec)   p_kst 4.143833e-01   p_cons 2.696970e-04   p_joint 1.831818e-03

Joint ci ratio: 1.115786e-01	ci left: 1.736184e-03	ci right 1.942788e-03	k: 1231	n:670000
Cons ci ratio: 2.897349e-01	ci left: 2.336134e-04	ci right 3.140948e-04	k: 182	n:670000
KS ci ratio: 5.694151e-03	ci left: 4.131186e-01	ci right 4.154791e-01	k: 277580	n:670000
ODAM   670000 perm   290 sec   (2314 perm/sec)   p_kst 4.142985e-01   p_cons 2.716418e-04   p_joint 1.837313e-03

Joint ci ratio: 1.114894e-01	ci left: 1.713510e-03	ci right 1.917242e-03	k: 1233	n:680000
Cons ci ratio: 2.873888e-01	ci left: 2.342705e-04	ci right 3.142059e-04	k: 185	n:680000
KS ci ratio: 5.652709e-03	ci left: 4.130774e-01	ci right 4.154204e-01	k: 281689	n:680000
ODAM   680000 perm   296 sec   (2294 perm/sec)   p_kst 4.142485e-01   p_cons 2.720588e-04   p_joint 1.813235e-03

Joint ci ratio: 1.108182e-01	ci left: 1.709811e-03	ci right 1.911799e-03	k: 1248	n:690000
Cons ci ratio: 2.858562e-01	ci left: 2.335654e-04	ci right 3.127586e-04	k: 187	n:690000
KS ci ratio: 5.610936e-03	ci left: 4.131431e-01	ci right 4.154692e-01	k: 285871	n:690000
ODAM   690000 perm   303 sec   (2275 perm/sec)   p_kst 4.143058e-01   p_cons 2.710145e-04   p_joint 1.808696e-03

Joint ci ratio: 1.109532e-01	ci left: 1.681217e-03	ci right 1.880085e-03	k: 1245	n:700000
Cons ci ratio: 2.843479e-01	ci left: 2.328816e-04	ci right 3.113515e-04	k: 189	n:700000
KS ci ratio: 5.570026e-03	ci left: 4.132114e-01	ci right 4.155208e-01	k: 290056	n:700000
ODAM   700000 perm   310 sec   (2256 perm/sec)   p_kst 4.143657e-01   p_cons 2.700000e-04   p_joint 1.778571e-03

Joint ci ratio: 1.101167e-01	ci left: 1.683559e-03	ci right 1.881105e-03	k: 1264	n:710000
Cons ci ratio: 2.843484e-01	ci left: 2.296016e-04	ci right 3.069664e-04	k: 189	n:710000
KS ci ratio: 5.529453e-03	ci left: 4.133256e-01	ci right 4.156188e-01	k: 294275	n:710000
ODAM   710000 perm   317 sec   (2237 perm/sec)   p_kst 4.144718e-01   p_cons 2.661972e-04   p_joint 1.780282e-03

Joint ci ratio: 1.092989e-01	ci left: 1.685841e-03	ci right 1.882091e-03	k: 1283	n:720000
Cons ci ratio: 2.814015e-01	ci left: 2.315742e-04	ci right 3.086515e-04	k: 193	n:720000
KS ci ratio: 5.491544e-03	ci left: 4.132784e-01	ci right 4.155556e-01	k: 298380	n:720000
ODAM   720000 perm   325 sec   (2219 perm/sec)   p_kst 4.144167e-01   p_cons 2.680556e-04   p_joint 1.781944e-03

Joint ci ratio: 1.085407e-01	ci left: 1.686733e-03	ci right 1.881638e-03	k: 1301	n:730000
Cons ci ratio: 2.778434e-01	ci left: 2.347711e-04	ci right 3.117517e-04	k: 198	n:730000
KS ci ratio: 5.452603e-03	ci left: 4.133928e-01	ci right 4.156544e-01	k: 302602	n:730000
ODAM   730000 perm   332 sec   (2201 perm/sec)   p_kst 4.145233e-01   p_cons 2.712329e-04   p_joint 1.782192e-03

Joint ci ratio: 1.078390e-01	ci left: 1.686291e-03	ci right 1.879805e-03	k: 1318	n:740000
Cons ci ratio: 2.771482e-01	ci left: 2.328558e-04	ci right 3.089840e-04	k: 199	n:740000
KS ci ratio: 5.416092e-03	ci left: 4.133597e-01	ci right 4.156059e-01	k: 306717	n:740000
ODAM   740000 perm   339 sec   (2183 perm/sec)   p_kst 4.144824e-01   p_cons 2.689189e-04   p_joint 1.781081e-03

Joint ci ratio: 1.120919e-01	ci left: 1.536726e-03	ci right 1.720491e-03	k: 1220	n:750000
Cons ci ratio: 2.744174e-01	ci left: 2.347156e-04	ci right 3.105654e-04	k: 203	n:750000
KS ci ratio: 5.380290e-03	ci left: 4.133288e-01	ci right 4.155599e-01	k: 310833	n:750000
ODAM   750000 perm   347 sec   (2164 perm/sec)   p_kst 4.144440e-01   p_cons 2.706667e-04   p_joint 1.626667e-03

Joint ci ratio: 1.115001e-01	ci left: 1.533133e-03	ci right 1.715436e-03	k: 1233	n:760000
Cons ci ratio: 2.744179e-01	ci left: 2.316272e-04	ci right 3.064791e-04	k: 203	n:760000
KS ci ratio: 5.345333e-03	ci left: 4.132856e-01	ci right 4.155019e-01	k: 314939	n:760000
ODAM   760000 perm   354 sec   (2147 perm/sec)   p_kst 4.143934e-01   p_cons 2.671053e-04   p_joint 1.622368e-03

Joint ci ratio: 9.678305e-02	ci left: 2.023057e-03	ci right 2.230068e-03	k: 1636	n:770000
Cons ci ratio: 2.691895e-01	ci left: 2.383009e-04	ci right 3.135945e-04	k: 211	n:770000
KS ci ratio: 5.310097e-03	ci left: 4.133305e-01	ci right 4.155325e-01	k: 319112	n:770000
ODAM   770000 perm   362 sec   (2129 perm/sec)   p_kst 4.144312e-01   p_cons 2.740260e-04   p_joint 2.124675e-03

Joint ci ratio: 9.690309e-02	ci left: 1.992115e-03	ci right 2.196226e-03	k: 1632	n:780000
Cons ci ratio: 2.673048e-01	ci left: 2.388333e-04	ci right 3.136782e-04	k: 214	n:780000
KS ci ratio: 5.276343e-03	ci left: 4.133013e-01	ci right 4.154891e-01	k: 323228	n:780000
ODAM   780000 perm   369 sec   (2112 perm/sec)   p_kst 4.143949e-01   p_cons 2.743590e-04   p_joint 2.092308e-03

Joint ci ratio: 8.928262e-02	ci left: 2.325472e-03	ci right 2.544025e-03	k: 1922	n:790000
Cons ci ratio: 2.648522e-01	ci left: 2.405357e-04	ci right 3.151078e-04	k: 218	n:790000
KS ci ratio: 5.242568e-03	ci left: 4.133336e-01	ci right 4.155075e-01	k: 327392	n:790000
ODAM   790000 perm   377 sec   (2096 perm/sec)   p_kst 4.144203e-01   p_cons 2.759494e-04   p_joint 2.432911e-03

Joint ci ratio: 9.018158e-02	ci left: 2.249965e-03	ci right 2.463664e-03	k: 1884	n:800000
Cons ci ratio: 2.642498e-01	ci left: 2.386961e-04	ci right 3.125017e-04	k: 219	n:800000
KS ci ratio: 5.209581e-03	ci left: 4.133514e-01	ci right 4.155117e-01	k: 331545	n:800000
ODAM   800000 perm   385 sec   (2079 perm/sec)   p_kst 4.144312e-01   p_cons 2.737500e-04   p_joint 2.355000e-03

Joint ci ratio: 8.984908e-02	ci left: 2.239082e-03	ci right 2.450922e-03	k: 1898	n:810000
Cons ci ratio: 2.630570e-01	ci left: 2.380552e-04	ci right 3.112756e-04	k: 221	n:810000
KS ci ratio: 5.176313e-03	ci left: 4.134528e-01	ci right 4.155997e-01	k: 335766	n:810000
ODAM   810000 perm   393 sec   (2063 perm/sec)   p_kst 4.145259e-01   p_cons 2.728395e-04   p_joint 2.343210e-03

Joint ci ratio: 8.903173e-02	ci left: 2.253505e-03	ci right 2.464669e-03	k: 1933	n:820000
Cons ci ratio: 2.624668e-01	ci left: 2.362912e-04	ci right 3.087793e-04	k: 222	n:820000
KS ci ratio: 5.145097e-03	ci left: 4.134176e-01	ci right 4.155513e-01	k: 339877	n:820000
ODAM   820000 perm   401 sec   (2047 perm/sec)   p_kst 4.144841e-01   p_cons 2.707317e-04   p_joint 2.357317e-03

Joint ci ratio: 9.069318e-02	ci left: 2.143907e-03	ci right 2.348748e-03	k: 1863	n:830000
Cons ci ratio: 2.607189e-01	ci left: 2.368218e-04	ci right 3.089100e-04	k: 225	n:830000
KS ci ratio: 5.115149e-03	ci left: 4.133158e-01	ci right 4.154366e-01	k: 343932	n:830000
ODAM   830000 perm   409 sec   (2032 perm/sec)   p_kst 4.143759e-01   p_cons 2.710843e-04   p_joint 2.244578e-03

Joint ci ratio: 9.028272e-02	ci left: 2.138164e-03	ci right 2.341483e-03	k: 1880	n:840000
Cons ci ratio: 2.595730e-01	ci left: 2.362282e-04	ci right 3.077684e-04	k: 227	n:840000
KS ci ratio: 5.084221e-03	ci left: 4.133593e-01	ci right 4.154675e-01	k: 348107	n:840000
ODAM   840000 perm   417 sec   (2017 perm/sec)   p_kst 4.144131e-01   p_cons 2.702381e-04   p_joint 2.238095e-03

Joint ci ratio: 9.050116e-02	ci left: 2.102659e-03	ci right 2.303111e-03	k: 1871	n:850000
Cons ci ratio: 2.595734e-01	ci left: 2.334490e-04	ci right 3.041476e-04	k: 227	n:850000
KS ci ratio: 5.054460e-03	ci left: 4.133430e-01	ci right 4.154387e-01	k: 352232	n:850000
ODAM   850000 perm   425 sec   (2002 perm/sec)   p_kst 4.143906e-01   p_cons 2.670588e-04   p_joint 2.201176e-03

Joint ci ratio: 8.987894e-02	ci left: 2.107760e-03	ci right 2.307244e-03	k: 1897	n:860000
Cons ci ratio: 2.584424e-01	ci left: 2.329091e-04	ci right 3.030873e-04	k: 229	n:860000
KS ci ratio: 5.025576e-03	ci left: 4.132923e-01	ci right 4.153757e-01	k: 356327	n:860000
ODAM   860000 perm   433 sec   (1987 perm/sec)   p_kst 4.143337e-01   p_cons 2.662791e-04   p_joint 2.205814e-03

Joint ci ratio: 8.938586e-02	ci left: 2.107130e-03	ci right 2.305403e-03	k: 1918	n:870000
Cons ci ratio: 2.556779e-01	ci left: 2.356089e-04	ci right 3.057201e-04	k: 234	n:870000
KS ci ratio: 4.996271e-03	ci left: 4.133313e-01	ci right 4.154027e-01	k: 360499	n:870000
ODAM   870000 perm   441 sec   (1973 perm/sec)   p_kst 4.143667e-01   p_cons 2.689655e-04   p_joint 2.204598e-03

Joint ci ratio: 8.890081e-02	ci left: 2.106517e-03	ci right 2.303601e-03	k: 1939	n:880000
Cons ci ratio: 2.551359e-01	ci left: 2.339951e-04	ci right 3.034549e-04	k: 235	n:880000
KS ci ratio: 4.967217e-03	ci left: 4.133943e-01	ci right 4.154540e-01	k: 364693	n:880000
ODAM   880000 perm   449 sec   (1958 perm/sec)   p_kst 4.144239e-01   p_cons 2.670455e-04   p_joint 2.203409e-03

Joint ci ratio: 9.074887e-02	ci left: 1.997171e-03	ci right 2.188115e-03	k: 1861	n:890000
Cons ci ratio: 2.545973e-01	ci left: 2.324177e-04	ci right 3.012406e-04	k: 236	n:890000
KS ci ratio: 4.939384e-03	ci left: 4.133853e-01	ci right 4.154333e-01	k: 368824	n:890000
ODAM   890000 perm   458 sec   (1945 perm/sec)   p_kst 4.144090e-01   p_cons 2.651685e-04   p_joint 2.091011e-03

Joint ci ratio: 8.231767e-02	ci left: 2.409849e-03	ci right 2.617817e-03	k: 2261	n:900000
Cons ci ratio: 2.535299e-01	ci left: 2.319160e-04	ci right 3.002569e-04	k: 238	n:900000
KS ci ratio: 4.911564e-03	ci left: 4.134209e-01	ci right 4.154575e-01	k: 372995	n:900000
ODAM   900000 perm   466 sec   (1930 perm/sec)   p_kst 4.144389e-01   p_cons 2.644444e-04   p_joint 2.512222e-03

Joint ci ratio: 8.279721e-02	ci left: 2.355383e-03	ci right 2.559892e-03	k: 2235	n:910000
Cons ci ratio: 2.524758e-01	ci left: 2.314260e-04	ci right 2.992943e-04	k: 240	n:910000
KS ci ratio: 4.883998e-03	ci left: 4.134766e-01	ci right 4.155020e-01	k: 377185	n:910000
ODAM   910000 perm   475 sec   (1916 perm/sec)   p_kst 4.144890e-01   p_cons 2.637363e-04   p_joint 2.456044e-03

Joint ci ratio: 8.222887e-02	ci left: 2.362782e-03	ci right 2.566458e-03	k: 2266	n:920000
Cons ci ratio: 2.519539e-01	ci left: 2.299287e-04	ci right 2.971966e-04	k: 241	n:920000
KS ci ratio: 4.857621e-03	ci left: 4.134583e-01	ci right 4.154727e-01	k: 381308	n:920000
ODAM   920000 perm   484 sec   (1903 perm/sec)   p_kst 4.144652e-01   p_cons 2.619565e-04   p_joint 2.463043e-03

Joint ci ratio: 8.163647e-02	ci left: 2.372133e-03	ci right 2.575072e-03	k: 2299	n:930000
Cons ci ratio: 2.504065e-01	ci left: 2.304791e-04	ci right 2.974294e-04	k: 244	n:930000
KS ci ratio: 4.831195e-03	ci left: 4.134878e-01	ci right 4.154913e-01	k: 385475	n:930000
ODAM   930000 perm   492 sec   (1889 perm/sec)   p_kst 4.144892e-01   p_cons 2.623656e-04   p_joint 2.472043e-03

Joint ci ratio: 8.112644e-02	ci left: 2.377121e-03	ci right 2.579156e-03	k: 2328	n:940000
Cons ci ratio: 2.488873e-01	ci left: 2.310190e-04	ci right 2.976560e-04	k: 247	n:940000
KS ci ratio: 4.804974e-03	ci left: 4.135389e-01	ci right 4.155318e-01	k: 389663	n:940000
ODAM   940000 perm   501 sec   (1876 perm/sec)   p_kst 4.145351e-01   p_cons 2.627660e-04   p_joint 2.476596e-03

Joint ci ratio: 8.064299e-02	ci left: 2.380976e-03	ci right 2.582076e-03	k: 2356	n:950000
Cons ci ratio: 2.473954e-01	ci left: 2.315488e-04	ci right 2.978766e-04	k: 250	n:950000
KS ci ratio: 4.779673e-03	ci left: 4.135386e-01	ci right 4.155209e-01	k: 393803	n:950000
ODAM   950000 perm   510 sec   (1863 perm/sec)   p_kst 4.145295e-01   p_cons 2.631579e-04   p_joint 2.480000e-03

Joint ci ratio: 8.116348e-02	ci left: 2.325554e-03	ci right 2.523300e-03	k: 2326	n:960000
Cons ci ratio: 2.469042e-01	ci left: 2.301140e-04	ci right 2.958798e-04	k: 251	n:960000
KS ci ratio: 4.754921e-03	ci left: 4.135226e-01	ci right 4.154946e-01	k: 397928	n:960000
ODAM   960000 perm   519 sec   (1850 perm/sec)   p_kst 4.145083e-01   p_cons 2.614583e-04   p_joint 2.422917e-03

Joint ci ratio: 8.076537e-02	ci left: 2.324811e-03	ci right 2.521478e-03	k: 2349	n:970000
Cons ci ratio: 2.454475e-01	ci left: 2.306437e-04	ci right 2.961127e-04	k: 254	n:970000
KS ci ratio: 4.730299e-03	ci left: 4.135328e-01	ci right 4.154945e-01	k: 402078	n:970000
ODAM   970000 perm   528 sec   (1838 perm/sec)   p_kst 4.145134e-01   p_cons 2.618557e-04   p_joint 2.421649e-03

Joint ci ratio: 8.032219e-02	ci left: 2.327084e-03	ci right 2.522814e-03	k: 2375	n:980000
Cons ci ratio: 2.430757e-01	ci left: 2.330800e-04	ci right 2.985048e-04	k: 259	n:980000
KS ci ratio: 4.706797e-03	ci left: 4.134662e-01	ci right 4.154179e-01	k: 406153	n:980000
ODAM   980000 perm   537 sec   (1826 perm/sec)   p_kst 4.144418e-01   p_cons 2.642857e-04   p_joint 2.423469e-03

Joint ci ratio: 7.993627e-02	ci left: 2.326345e-03	ci right 2.521029e-03	k: 2398	n:990000
Cons ci ratio: 2.412270e-01	ci left: 2.345209e-04	ci right 2.997746e-04	k: 263	n:990000
KS ci ratio: 4.683641e-03	ci left: 4.134011e-01	ci right 4.153428e-01	k: 410228	n:990000
ODAM   990000 perm   546 sec   (1814 perm/sec)   p_kst 4.143717e-01   p_cons 2.656566e-04   p_joint 2.422222e-03

Joint ci ratio: 8.252941e-02	ci left: 2.158080e-03	ci right 2.344822e-03	k: 2250	n:1000000
Cons ci ratio: 2.394199e-01	ci left: 2.359349e-04	ci right 3.010173e-04	k: 267	n:1000000
KS ci ratio: 4.659989e-03	ci left: 4.134242e-01	ci right 4.153563e-01	k: 414390	n:1000000
ODAM   1000000 perm   555 sec   (1801 perm/sec)   p_kst 4.143900e-01   p_cons 2.670000e-04   p_joint 2.250000e-03

Joint ci ratio: 8.198459e-02	ci left: 2.165805e-03	ci right 2.351919e-03	k: 2280	n:1010000
Cons ci ratio: 2.372170e-01	ci left: 2.382538e-04	ci right 3.032824e-04	k: 272	n:1010000
KS ci ratio: 4.636776e-03	ci left: 4.134380e-01	ci right 4.153605e-01	k: 418543	n:1010000
ODAM   1010000 perm   565 sec   (1788 perm/sec)   p_kst 4.143990e-01   p_cons 2.693069e-04   p_joint 2.257426e-03

Joint ci ratio: 8.169882e-02	ci left: 2.159937e-03	ci right 2.344869e-03	k: 2296	n:1020000
Cons ci ratio: 2.367839e-01	ci left: 2.368402e-04	ci right 3.013476e-04	k: 273	n:1020000
KS ci ratio: 4.613441e-03	ci left: 4.135006e-01	ci right 4.154136e-01	k: 422746	n:1020000
ODAM   1020000 perm   574 sec   (1776 perm/sec)   p_kst 4.144569e-01   p_cons 2.676471e-04   p_joint 2.250980e-03

Joint ci ratio: 8.594766e-02	ci left: 1.928888e-03	ci right 2.103058e-03	k: 2075	n:1030000
Cons ci ratio: 2.363532e-01	ci left: 2.354541e-04	ci right 2.994502e-04	k: 274	n:1030000
KS ci ratio: 4.589959e-03	ci left: 4.136144e-01	ci right 4.155181e-01	k: 427003	n:1030000
ODAM   1030000 perm   584 sec   (1764 perm/sec)   p_kst 4.145660e-01   p_cons 2.660194e-04   p_joint 2.014563e-03

Joint ci ratio: 8.563904e-02	ci left: 1.924454e-03	ci right 2.097569e-03	k: 2090	n:1040000
Cons ci ratio: 2.342332e-01	ci left: 2.377144e-04	ci right 3.016614e-04	k: 279	n:1040000
KS ci ratio: 4.568451e-03	ci left: 4.135539e-01	ci right 4.154485e-01	k: 431081	n:1040000
ODAM   1040000 perm   594 sec   (1752 perm/sec)   p_kst 4.145010e-01   p_cons 2.682692e-04   p_joint 2.009615e-03

Joint ci ratio: 8.533373e-02	ci left: 1.920106e-03	ci right 2.092183e-03	k: 2105	n:1050000
Cons ci ratio: 2.325776e-01	ci left: 2.390373e-04	ci right 3.028203e-04	k: 283	n:1050000
KS ci ratio: 4.546618e-03	ci left: 4.135613e-01	ci right 4.154468e-01	k: 435229	n:1050000
ODAM   1050000 perm   603 sec   (1740 perm/sec)   p_kst 4.145038e-01   p_cons 2.695238e-04   p_joint 2.004762e-03

Joint ci ratio: 8.487142e-02	ci left: 1.923229e-03	ci right 2.094605e-03	k: 2128	n:1060000
Cons ci ratio: 2.309567e-01	ci left: 2.403367e-04	ci right 3.039558e-04	k: 287	n:1060000
KS ci ratio: 4.525446e-03	ci left: 4.135308e-01	ci right 4.154074e-01	k: 439337	n:1060000
ODAM   1060000 perm   613 sec   (1729 perm/sec)   p_kst 4.144689e-01   p_cons 2.707547e-04   p_joint 2.007547e-03

Joint ci ratio: 8.439690e-02	ci left: 1.927210e-03	ci right 2.097934e-03	k: 2152	n:1070000
Cons ci ratio: 2.297631e-01	ci left: 2.407325e-04	ci right 3.040803e-04	k: 290	n:1070000
KS ci ratio: 4.504525e-03	ci left: 4.135056e-01	ci right 4.153734e-01	k: 443450	n:1070000
ODAM   1070000 perm   623 sec   (1718 perm/sec)   p_kst 4.144393e-01   p_cons 2.710280e-04   p_joint 2.011215e-03

Joint ci ratio: 8.404638e-02	ci left: 1.925681e-03	ci right 2.095526e-03	k: 2170	n:1080000
Cons ci ratio: 2.281999e-01	ci left: 2.419948e-04	ci right 3.051805e-04	k: 294	n:1080000
KS ci ratio: 4.483848e-03	ci left: 4.134855e-01	ci right 4.153446e-01	k: 447568	n:1080000
ODAM   1080000 perm   633 sec   (1707 perm/sec)   p_kst 4.144148e-01   p_cons 2.722222e-04   p_joint 2.009259e-03

Joint ci ratio: 8.375772e-02	ci left: 1.921487e-03	ci right 2.090351e-03	k: 2185	n:1090000
Cons ci ratio: 2.270484e-01	ci left: 2.423700e-04	ci right 3.052897e-04	k: 297	n:1090000
KS ci ratio: 4.463090e-03	ci left: 4.135052e-01	ci right 4.153558e-01	k: 451729	n:1090000
ODAM   1090000 perm   642 sec   (1697 perm/sec)   p_kst 4.144303e-01   p_cons 2.724771e-04   p_joint 2.004587e-03

Joint ci ratio: 8.337718e-02	ci left: 1.921820e-03	ci right 2.089910e-03	k: 2205	n:1100000
Cons ci ratio: 2.262903e-01	ci left: 2.418816e-04	ci right 3.044356e-04	k: 299	n:1100000
KS ci ratio: 4.443317e-03	ci left: 4.134483e-01	ci right 4.152903e-01	k: 455806	n:1100000
ODAM   1100000 perm   653 sec   (1686 perm/sec)   p_kst 4.143691e-01   p_cons 2.718182e-04   p_joint 2.004545e-03

Joint ci ratio: 8.513609e-02	ci left: 1.825130e-03	ci right 1.988297e-03	k: 2115	n:1110000
Cons ci ratio: 2.255399e-01	ci left: 2.414023e-04	ci right 3.035965e-04	k: 301	n:1110000
KS ci ratio: 4.423534e-03	ci left: 4.134221e-01	ci right 4.152558e-01	k: 459916	n:1110000
ODAM   1110000 perm   663 sec   (1675 perm/sec)   p_kst 4.143387e-01   p_cons 2.711712e-04   p_joint 1.905405e-03

Joint ci ratio: 8.475642e-02	ci left: 1.825438e-03	ci right 1.987869e-03	k: 2134	n:1120000
Cons ci ratio: 2.236955e-01	ci left: 2.434601e-04	ci right 3.056008e-04	k: 306	n:1120000
KS ci ratio: 4.403858e-03	ci left: 4.134134e-01	ci right 4.152389e-01	k: 464045	n:1120000
ODAM   1120000 perm   673 sec   (1665 perm/sec)   p_kst 4.143259e-01   p_cons 2.732143e-04   p_joint 1.905357e-03

Joint ci ratio: 8.548225e-02	ci left: 1.778102e-03	ci right 1.937743e-03	k: 2098	n:1130000
Cons ci ratio: 2.229704e-01	ci left: 2.429765e-04	ci right 3.047652e-04	k: 308	n:1130000
KS ci ratio: 4.384131e-03	ci left: 4.134393e-01	ci right 4.152567e-01	k: 468213	n:1130000
ODAM   1130000 perm   683 sec   (1655 perm/sec)   p_kst 4.143478e-01   p_cons 2.725664e-04   p_joint 1.856637e-03

Joint ci ratio: 8.773084e-02	ci left: 1.671531e-03	ci right 1.825755e-03	k: 1992	n:1140000
Cons ci ratio: 2.218958e-01	ci left: 2.433301e-04	ci right 3.048697e-04	k: 311	n:1140000
KS ci ratio: 4.364880e-03	ci left: 4.134411e-01	ci right 4.152505e-01	k: 472354	n:1140000
ODAM   1140000 perm   693 sec   (1645 perm/sec)   p_kst 4.143456e-01   p_cons 2.728070e-04   p_joint 1.747368e-03

Joint ci ratio: 8.746812e-02	ci left: 1.667202e-03	ci right 1.820542e-03	k: 2004	n:1150000
Cons ci ratio: 2.211881e-01	ci left: 2.428568e-04	ci right 3.040542e-04	k: 313	n:1150000
KS ci ratio: 4.345942e-03	ci left: 4.134360e-01	ci right 4.152375e-01	k: 476487	n:1150000
ODAM   1150000 perm   703 sec   (1635 perm/sec)   p_kst 4.143365e-01   p_cons 2.721739e-04   p_joint 1.742609e-03

Joint ci ratio: 8.771012e-02	ci left: 1.643554e-03	ci right 1.795158e-03	k: 1993	n:1160000
Cons ci ratio: 2.204871e-01	ci left: 2.423920e-04	ci right 3.032524e-04	k: 315	n:1160000
KS ci ratio: 4.326365e-03	ci left: 4.135300e-01	ci right 4.153238e-01	k: 480735	n:1160000
ODAM   1160000 perm   714 sec   (1625 perm/sec)   p_kst 4.144267e-01   p_cons 2.715517e-04   p_joint 1.718103e-03

Joint ci ratio: 8.733861e-02	ci left: 1.643718e-03	ci right 1.794663e-03	k: 2010	n:1170000
Cons ci ratio: 2.194478e-01	ci left: 2.427431e-04	ci right 3.033656e-04	k: 318	n:1170000
KS ci ratio: 4.308134e-03	ci left: 4.135003e-01	ci right 4.152864e-01	k: 484840	n:1170000
ODAM   1170000 perm   725 sec   (1614 perm/sec)   p_kst 4.143932e-01   p_cons 2.717949e-04   p_joint 1.717949e-03

Joint ci ratio: 8.705783e-02	ci left: 1.640565e-03	ci right 1.790711e-03	k: 2023	n:1180000
Cons ci ratio: 2.180847e-01	ci left: 2.438901e-04	ci right 3.043700e-04	k: 322	n:1180000
KS ci ratio: 4.289376e-03	ci left: 4.135567e-01	ci right 4.153352e-01	k: 489046	n:1180000
ODAM   1180000 perm   735 sec   (1605 perm/sec)   p_kst 4.144458e-01   p_cons 2.728814e-04   p_joint 1.714407e-03

Joint ci ratio: 8.667325e-02	ci left: 1.641576e-03	ci right 1.791118e-03	k: 2041	n:1190000
Cons ci ratio: 2.180849e-01	ci left: 2.418405e-04	ci right 3.018123e-04	k: 322	n:1190000
KS ci ratio: 4.271526e-03	ci left: 4.135365e-01	ci right 4.153076e-01	k: 493162	n:1190000
ODAM   1190000 perm   747 sec   (1594 perm/sec)   p_kst 4.144218e-01   p_cons 2.705882e-04   p_joint 1.715126e-03

Joint ci ratio: 8.658896e-02	ci left: 1.631157e-03	ci right 1.779598e-03	k: 2045	n:1200000
Cons ci ratio: 2.174129e-01	ci left: 2.414010e-04	ci right 3.010546e-04	k: 324	n:1200000
KS ci ratio: 4.253882e-03	ci left: 4.135184e-01	ci right 4.152820e-01	k: 497280	n:1200000
ODAM   1200000 perm   757 sec   (1584 perm/sec)   p_kst 4.144000e-01   p_cons 2.700000e-04   p_joint 1.704167e-03

Joint ci ratio: 8.680232e-02	ci left: 1.609591e-03	ci right 1.756448e-03	k: 2035	n:1210000
Cons ci ratio: 2.160871e-01	ci left: 2.425323e-04	ci right 3.020515e-04	k: 328	n:1210000
KS ci ratio: 4.236318e-03	ci left: 4.135163e-01	ci right 4.152726e-01	k: 501417	n:1210000
ODAM   1210000 perm   768 sec   (1575 perm/sec)   p_kst 4.143942e-01   p_cons 2.710744e-04   p_joint 1.681818e-03

Joint ci ratio: 8.648438e-02	ci left: 1.608426e-03	ci right 1.754612e-03	k: 2050	n:1220000
Cons ci ratio: 2.154334e-01	ci left: 2.420951e-04	ci right 3.013035e-04	k: 330	n:1220000
KS ci ratio: 4.219219e-03	ci left: 4.134855e-01	ci right 4.152346e-01	k: 505519	n:1220000
ODAM   1220000 perm   779 sec   (1565 perm/sec)   p_kst 4.143598e-01   p_cons 2.704918e-04   p_joint 1.680328e-03

Joint ci ratio: 8.619082e-02	ci left: 1.606486e-03	ci right 1.751975e-03	k: 2064	n:1230000
Cons ci ratio: 2.144636e-01	ci left: 2.424345e-04	ci right 3.014240e-04	k: 333	n:1230000
KS ci ratio: 4.202445e-03	ci left: 4.134414e-01	ci right 4.151834e-01	k: 509604	n:1230000
ODAM   1230000 perm   790 sec   (1556 perm/sec)   p_kst 4.143122e-01   p_cons 2.707317e-04   p_joint 1.678049e-03

Joint ci ratio: 8.587953e-02	ci left: 1.605367e-03	ci right 1.750203e-03	k: 2079	n:1240000
Cons ci ratio: 2.138245e-01	ci left: 2.420058e-04	ci right 3.006924e-04	k: 335	n:1240000
KS ci ratio: 4.186023e-03	ci left: 4.133804e-01	ci right 4.151152e-01	k: 513667	n:1240000
ODAM   1240000 perm   802 sec   (1547 perm/sec)   p_kst 4.142476e-01   p_cons 2.701613e-04   p_joint 1.676613e-03

Joint ci ratio: 9.197121e-02	ci left: 1.384443e-03	ci right 1.518684e-03	k: 1813	n:1250000
Cons ci ratio: 2.135071e-01	ci left: 2.408269e-04	ci right 2.991297e-04	k: 336	n:1250000
KS ci ratio: 4.052591e-03	ci left: 4.272156e-01	ci right 4.289512e-01	k: 535104	n:1250000
ODAM   1250000 perm   813 sec   (1538 perm/sec)   p_kst 4.280832e-01   p_cons 2.688000e-04   p_joint 1.450400e-03

Joint ci ratio: 9.169375e-02	ci left: 1.381985e-03	ci right 1.515562e-03	k: 1824	n:1260000
Cons ci ratio: 2.131912e-01	ci left: 2.396669e-04	ci right 2.975916e-04	k: 337	n:1260000
KS ci ratio: 4.036869e-03	ci left: 4.271715e-01	ci right 4.289002e-01	k: 539325	n:1260000
ODAM   1260000 perm   824 sec   (1529 perm/sec)   p_kst 4.280357e-01   p_cons 2.674603e-04   p_joint 1.447619e-03

Joint ci ratio: 9.141878e-02	ci left: 1.379566e-03	ci right 1.512488e-03	k: 1835	n:1270000
Cons ci ratio: 2.125633e-01	ci left: 2.392706e-04	ci right 2.969070e-04	k: 339	n:1270000
KS ci ratio: 4.021095e-03	ci left: 4.271566e-01	ci right 4.288784e-01	k: 543582	n:1270000
ODAM   1270000 perm   835 sec   (1520 perm/sec)   p_kst 4.280173e-01   p_cons 2.669291e-04   p_joint 1.444882e-03

Joint ci ratio: 9.112157e-02	ci left: 1.377949e-03	ci right 1.510261e-03	k: 1847	n:1280000
Cons ci ratio: 2.125635e-01	ci left: 2.374012e-04	ci right 2.945875e-04	k: 339	n:1280000
KS ci ratio: 4.005761e-03	ci left: 4.271106e-01	ci right 4.288257e-01	k: 547799	n:1280000
ODAM   1280000 perm   847 sec   (1512 perm/sec)   p_kst 4.279680e-01   p_cons 2.648437e-04   p_joint 1.442969e-03

Joint ci ratio: 9.489953e-02	ci left: 1.258231e-03	ci right 1.384335e-03	k: 1703	n:1290000
Cons ci ratio: 2.125637e-01	ci left: 2.355609e-04	ci right 2.923039e-04	k: 339	n:1290000
KS ci ratio: 3.989956e-03	ci left: 4.271444e-01	ci right 4.288528e-01	k: 552118	n:1290000
ODAM   1290000 perm   858 sec   (1503 perm/sec)   p_kst 4.279984e-01   p_cons 2.627907e-04   p_joint 1.320155e-03

Joint ci ratio: 9.650101e-02	ci left: 1.206505e-03	ci right 1.329580e-03	k: 1647	n:1300000
Cons ci ratio: 2.116321e-01	ci left: 2.359340e-04	ci right 2.924855e-04	k: 342	n:1300000
KS ci ratio: 3.974493e-03	ci left: 4.271585e-01	ci right 4.288603e-01	k: 556412	n:1300000
ODAM   1300000 perm   869 sec   (1495 perm/sec)   p_kst 4.280092e-01   p_cons 2.630769e-04   p_joint 1.266923e-03

Joint ci ratio: 9.626780e-02	ci left: 1.203255e-03	ci right 1.325685e-03	k: 1655	n:1310000
Cons ci ratio: 2.104087e-01	ci left: 2.370251e-04	ci right 2.934673e-04	k: 346	n:1310000
KS ci ratio: 3.959375e-03	ci left: 4.271517e-01	ci right 4.288471e-01	k: 560679	n:1310000
ODAM   1310000 perm   881 sec   (1487 perm/sec)   p_kst 4.279992e-01   p_cons 2.641221e-04   p_joint 1.263359e-03

Joint ci ratio: 9.821751e-02	ci left: 1.146092e-03	ci right 1.265204e-03	k: 1590	n:1320000
Cons ci ratio: 2.098050e-01	ci left: 2.366649e-04	ci right 2.928388e-04	k: 348	n:1320000
KS ci ratio: 3.943726e-03	ci left: 4.272322e-01	ci right 4.289211e-01	k: 565061	n:1320000
ODAM   1320000 perm   892 sec   (1479 perm/sec)   p_kst 4.280765e-01   p_cons 2.636364e-04   p_joint 1.204545e-03

Joint ci ratio: 9.800234e-02	ci left: 1.142609e-03	ci right 1.261084e-03	k: 1597	n:1330000
Cons ci ratio: 2.095052e-01	ci left: 2.355978e-04	ci right 2.914284e-04	k: 349	n:1330000
KS ci ratio: 3.929022e-03	ci left: 4.272168e-01	ci right 4.288993e-01	k: 569317	n:1330000
ODAM   1330000 perm   904 sec   (1471 perm/sec)   p_kst 4.280579e-01   p_cons 2.624060e-04   p_joint 1.200752e-03

Joint ci ratio: 9.818751e-02	ci left: 1.129714e-03	ci right 1.247086e-03	k: 1591	n:1340000
Cons ci ratio: 2.083180e-01	ci left: 2.366685e-04	ci right 2.923945e-04	k: 353	n:1340000
KS ci ratio: 3.914469e-03	ci left: 4.272031e-01	ci right 4.288793e-01	k: 573575	n:1340000
ODAM   1340000 perm   915 sec   (1464 perm/sec)   p_kst 4.280410e-01   p_cons 2.634328e-04   p_joint 1.187313e-03

Joint ci ratio: 9.785007e-02	ci left: 1.129294e-03	ci right 1.246196e-03	k: 1602	n:1350000
Cons ci ratio: 2.074409e-01	ci left: 2.370220e-04	ci right 2.925664e-04	k: 356	n:1350000
KS ci ratio: 3.900129e-03	ci left: 4.271829e-01	ci right 4.288529e-01	k: 577824	n:1350000
ODAM   1350000 perm   927 sec   (1456 perm/sec)   p_kst 4.280178e-01   p_cons 2.637037e-04   p_joint 1.186667e-03

Joint ci ratio: 9.736522e-02	ci left: 1.132468e-03	ci right 1.249085e-03	k: 1618	n:1360000
Cons ci ratio: 2.068623e-01	ci left: 2.366735e-04	ci right 2.919619e-04	k: 358	n:1360000
KS ci ratio: 3.885601e-03	ci left: 4.272064e-01	ci right 4.288703e-01	k: 582132	n:1360000
ODAM   1360000 perm   939 sec   (1448 perm/sec)   p_kst 4.280382e-01   p_cons 2.632353e-04   p_joint 1.189706e-03

Joint ci ratio: 9.694688e-02	ci left: 1.134173e-03	ci right 1.250434e-03	k: 1632	n:1370000
Cons ci ratio: 2.068625e-01	ci left: 2.349459e-04	ci right 2.898308e-04	k: 358	n:1370000
KS ci ratio: 3.871489e-03	ci left: 4.271975e-01	ci right 4.288553e-01	k: 586396	n:1370000
ODAM   1370000 perm   951 sec   (1440 perm/sec)   p_kst 4.280263e-01   p_cons 2.613139e-04   p_joint 1.191241e-03

Joint ci ratio: 9.718593e-02	ci left: 1.120297e-03	ci right 1.235436e-03	k: 1624	n:1380000
Cons ci ratio: 2.054367e-01	ci left: 2.366796e-04	ci right 2.915405e-04	k: 363	n:1380000
KS ci ratio: 3.857455e-03	ci left: 4.271982e-01	ci right 4.288500e-01	k: 590673	n:1380000
ODAM   1380000 perm   963 sec   (1433 perm/sec)   p_kst 4.280239e-01   p_cons 2.630435e-04   p_joint 1.176812e-03

Joint ci ratio: 9.679946e-02	ci left: 1.121363e-03	ci right 1.236127e-03	k: 1637	n:1390000
Cons ci ratio: 2.043170e-01	ci left: 2.377070e-04	ci right 2.924682e-04	k: 367	n:1390000
KS ci ratio: 3.843629e-03	ci left: 4.271916e-01	ci right 4.288374e-01	k: 594940	n:1390000
ODAM   1390000 perm   976 sec   (1425 perm/sec)   p_kst 4.280144e-01   p_cons 2.640288e-04   p_joint 1.177698e-03

Joint ci ratio: 9.662285e-02	ci left: 1.117535e-03	ci right 1.231687e-03	k: 1643	n:1400000
Cons ci ratio: 2.034892e-01	ci left: 2.380425e-04	ci right 2.926313e-04	k: 370	n:1400000
KS ci ratio: 3.829873e-03	ci left: 4.271952e-01	ci right 4.288351e-01	k: 599221	n:1400000
ODAM   1400000 perm   988 sec   (1418 perm/sec)   p_kst 4.280150e-01   p_cons 2.642857e-04   p_joint 1.173571e-03

Joint ci ratio: 9.633038e-02	ci left: 1.116531e-03	ci right 1.230215e-03	k: 1653	n:1410000
Cons ci ratio: 2.018632e-01	ci left: 2.403937e-04	ci right 2.950268e-04	k: 376	n:1410000
KS ci ratio: 3.816224e-03	ci left: 4.272037e-01	ci right 4.288378e-01	k: 603509	n:1410000
ODAM   1410000 perm   1000 sec   (1410 perm/sec)   p_kst 4.280206e-01   p_cons 2.666667e-04   p_joint 1.172340e-03

Joint ci ratio: 8.643136e-02	ci left: 1.383947e-03	ci right 1.509650e-03	k: 2053	n:1420000
Cons ci ratio: 2.010648e-01	ci left: 2.407069e-04	ci right 2.951683e-04	k: 379	n:1420000
KS ci ratio: 3.802928e-03	ci left: 4.271853e-01	ci right 4.288136e-01	k: 607759	n:1420000
ODAM   1420000 perm   1012 sec   (1403 perm/sec)   p_kst 4.279993e-01   p_cons 2.669014e-04   p_joint 1.445775e-03

Joint ci ratio: 7.993278e-02	ci left: 1.611894e-03	ci right 1.746781e-03	k: 2400	n:1430000
Cons ci ratio: 2.008009e-01	ci left: 2.396877e-04	ci right 2.938386e-04	k: 380	n:1430000
KS ci ratio: 3.789656e-03	ci left: 4.271818e-01	ci right 4.288045e-01	k: 612030	n:1430000
ODAM   1430000 perm   1024 sec   (1396 perm/sec)   p_kst 4.279930e-01   p_cons 2.657343e-04   p_joint 1.678322e-03

Joint ci ratio: 7.966780e-02	ci left: 1.611590e-03	ci right 1.745983e-03	k: 2416	n:1440000
Cons ci ratio: 2.002759e-01	ci left: 2.393423e-04	ci right 2.932566e-04	k: 382	n:1440000
KS ci ratio: 3.776523e-03	ci left: 4.271785e-01	ci right 4.287954e-01	k: 616301	n:1440000
ODAM   1440000 perm   1037 sec   (1389 perm/sec)   p_kst 4.279868e-01   p_cons 2.652778e-04   p_joint 1.677778e-03

Joint ci ratio: 8.179754e-02	ci left: 1.516681e-03	ci right 1.646702e-03	k: 2292	n:1450000
Cons ci ratio: 2.000151e-01	ci left: 2.383468e-04	ci right 2.919584e-04	k: 383	n:1450000
KS ci ratio: 3.763323e-03	ci left: 4.272013e-01	ci right 4.288127e-01	k: 620610	n:1450000
ODAM   1450000 perm   1049 sec   (1382 perm/sec)   p_kst 4.280069e-01   p_cons 2.641379e-04   p_joint 1.580690e-03

Joint ci ratio: 8.144301e-02	ci left: 1.519712e-03	ci right 1.649401e-03	k: 2312	n:1460000
Cons ci ratio: 1.992383e-01	ci left: 2.386664e-04	ci right 2.921160e-04	k: 386	n:1460000
KS ci ratio: 3.750639e-03	ci left: 4.271746e-01	ci right 4.287805e-01	k: 624847	n:1460000
ODAM   1460000 perm   1062 sec   (1375 perm/sec)   p_kst 4.279774e-01   p_cons 2.643836e-04   p_joint 1.583562e-03

Joint ci ratio: 8.172705e-02	ci left: 1.498711e-03	ci right 1.627075e-03	k: 2296	n:1470000
Cons ci ratio: 1.979634e-01	ci left: 2.402750e-04	ci right 2.936991e-04	k: 391	n:1470000
KS ci ratio: 3.737750e-03	ci left: 4.271918e-01	ci right 4.287922e-01	k: 629148	n:1470000
ODAM   1470000 perm   1074 sec   (1368 perm/sec)   p_kst 4.279918e-01   p_cons 2.659864e-04   p_joint 1.561905e-03

Joint ci ratio: 8.351251e-02	ci left: 1.424395e-03	ci right 1.549190e-03	k: 2199	n:1480000
Cons ci ratio: 1.974604e-01	ci left: 2.399360e-04	ci right 2.931328e-04	k: 393	n:1480000
KS ci ratio: 3.725445e-03	ci left: 4.271493e-01	ci right 4.287442e-01	k: 633361	n:1480000
ODAM   1480000 perm   1087 sec   (1361 perm/sec)   p_kst 4.279466e-01   p_cons 2.655405e-04   p_joint 1.485811e-03

Joint ci ratio: 8.326691e-02	ci left: 1.423379e-03	ci right 1.547700e-03	k: 2212	n:1490000
Cons ci ratio: 1.972104e-01	ci left: 2.389637e-04	ci right 2.918697e-04	k: 394	n:1490000
KS ci ratio: 3.713057e-03	ci left: 4.271342e-01	ci right 4.287238e-01	k: 637614	n:1490000
ODAM   1490000 perm   1100 sec   (1354 perm/sec)   p_kst 4.279289e-01   p_cons 2.644295e-04   p_joint 1.484564e-03

Joint ci ratio: 8.293024e-02	ci left: 1.425640e-03	ci right 1.549631e-03	k: 2230	n:1500000
Cons ci ratio: 1.964657e-01	ci left: 2.392720e-04	ci right 2.920224e-04	k: 397	n:1500000
KS ci ratio: 3.700465e-03	ci left: 4.271627e-01	ci right 4.287469e-01	k: 641932	n:1500000
ODAM   1500000 perm   1113 sec   (1348 perm/sec)   p_kst 4.279547e-01   p_cons 2.646667e-04   p_joint 1.486667e-03

Joint ci ratio: 8.276363e-02	ci left: 1.422036e-03	ci right 1.545452e-03	k: 2239	n:1510000
Cons ci ratio: 1.962195e-01	ci left: 2.383171e-04	ci right 2.907832e-04	k: 398	n:1510000
KS ci ratio: 3.688463e-03	ci left: 4.271292e-01	ci right 4.287082e-01	k: 646157	n:1510000
ODAM   1510000 perm   1126 sec   (1341 perm/sec)   p_kst 4.279185e-01   p_cons 2.635762e-04   p_joint 1.482781e-03

Joint ci ratio: 8.250623e-02	ci left: 1.421700e-03	ci right 1.544686e-03	k: 2253	n:1520000
Cons ci ratio: 1.954859e-01	ci left: 2.386262e-04	ci right 2.909405e-04	k: 401	n:1520000
KS ci ratio: 3.676242e-03	ci left: 4.271409e-01	ci right 4.287147e-01	k: 650450	n:1520000
ODAM   1520000 perm   1139 sec   (1334 perm/sec)   p_kst 4.279276e-01   p_cons 2.638158e-04   p_joint 1.482237e-03

Joint ci ratio: 8.226937e-02	ci left: 1.420730e-03	ci right 1.543261e-03	k: 2266	n:1530000
Cons ci ratio: 1.947605e-01	ci left: 2.389315e-04	ci right 2.910954e-04	k: 404	n:1530000
KS ci ratio: 3.663892e-03	ci left: 4.271857e-01	ci right 4.287544e-01	k: 654794	n:1530000
ODAM   1530000 perm   1152 sec   (1328 perm/sec)   p_kst 4.279699e-01   p_cons 2.640523e-04   p_joint 1.481046e-03

Joint ci ratio: 8.198055e-02	ci left: 1.421680e-03	ci right 1.543843e-03	k: 2282	n:1540000
Cons ci ratio: 1.942814e-01	ci left: 2.386155e-04	ci right 2.905670e-04	k: 406	n:1540000
KS ci ratio: 3.651709e-03	ci left: 4.272242e-01	ci right 4.287878e-01	k: 659129	n:1540000
ODAM   1540000 perm   1165 sec   (1321 perm/sec)   p_kst 4.280058e-01   p_cons 2.636364e-04   p_joint 1.481818e-03

Joint ci ratio: 8.768511e-02	ci left: 1.231265e-03	ci right 1.344805e-03	k: 1995	n:1550000
Cons ci ratio: 1.938059e-01	ci left: 2.383036e-04	ci right 2.900453e-04	k: 408	n:1550000
KS ci ratio: 3.640126e-03	ci left: 4.271977e-01	ci right 4.287562e-01	k: 663364	n:1550000
ODAM   1550000 perm   1179 sec   (1315 perm/sec)   p_kst 4.279768e-01   p_cons 2.632258e-04   p_joint 1.287097e-03

Joint ci ratio: 8.815101e-02	ci left: 1.210206e-03	ci right 1.322428e-03	k: 1974	n:1560000
Cons ci ratio: 1.930990e-01	ci left: 2.386060e-04	ci right 2.902022e-04	k: 411	n:1560000
KS ci ratio: 3.628601e-03	ci left: 4.271785e-01	ci right 4.287320e-01	k: 667610	n:1560000
ODAM   1560000 perm   1193 sec   (1308 perm/sec)   p_kst 4.279551e-01   p_cons 2.634615e-04   p_joint 1.265385e-03

Joint ci ratio: 3.893413e-02	ci left: 6.290364e-03	ci right 6.540761e-03	k: 10071	n:1570000
Cons ci ratio: 1.278180e-01	ci left: 5.604520e-04	ci right 6.375879e-04	k: 939	n:1570000
KS ci ratio: 3.617283e-03	ci left: 4.271463e-01	ci right 4.286948e-01	k: 671835	n:1570000
ODAM   1570000 perm   1207 sec   (1301 perm/sec)   p_kst 4.279204e-01   p_cons 5.980892e-04   p_joint 6.414650e-03

Joint ci ratio: 3.894271e-02	ci left: 6.248042e-03	ci right 6.496811e-03	k: 10067	n:1580000
Cons ci ratio: 1.272774e-01	ci left: 5.618066e-04	ci right 6.387773e-04	k: 947	n:1580000
KS ci ratio: 3.605795e-03	ci left: 4.271517e-01	ci right 4.286954e-01	k: 676119	n:1580000
ODAM   1580000 perm   1220 sec   (1295 perm/sec)   p_kst 4.279234e-01   p_cons 5.993671e-04   p_joint 6.371519e-03

Joint ci ratio: 3.925070e-02	ci left: 6.111584e-03	ci right 6.356887e-03	k: 9911	n:1590000
Cons ci ratio: 1.269432e-01	ci left: 5.613178e-04	ci right 6.380044e-04	k: 952	n:1590000
KS ci ratio: 3.594532e-03	ci left: 4.271415e-01	ci right 4.286802e-01	k: 680378	n:1590000
ODAM   1590000 perm   1234 sec   (1288 perm/sec)   p_kst 4.279107e-01   p_cons 5.987421e-04   p_joint 6.233333e-03

Joint ci ratio: 3.914432e-02	ci left: 6.106805e-03	ci right 6.351237e-03	k: 9965	n:1600000
Cons ci ratio: 1.266115e-01	ci left: 5.608355e-04	ci right 6.372410e-04	k: 957	n:1600000
KS ci ratio: 3.583108e-03	ci left: 4.271675e-01	ci right 4.287015e-01	k: 684695	n:1600000
ODAM   1600000 perm   1248 sec   (1282 perm/sec)   p_kst 4.279344e-01   p_cons 5.981250e-04   p_joint 6.228125e-03

Joint ci ratio: 3.900942e-02	ci left: 6.111313e-03	ci right 6.355064e-03	k: 10034	n:1610000
Cons ci ratio: 1.262169e-01	ci left: 5.609609e-04	ci right 6.371274e-04	k: 963	n:1610000
KS ci ratio: 3.572205e-03	ci left: 4.271368e-01	ci right 4.286659e-01	k: 688921	n:1610000
ODAM   1610000 perm   1262 sec   (1276 perm/sec)   p_kst 4.279012e-01   p_cons 5.981366e-04   p_joint 6.232298e-03

Joint ci ratio: 3.883919e-02	ci left: 6.127382e-03	ci right 6.370684e-03	k: 10122	n:1620000
Cons ci ratio: 1.256316e-01	ci left: 5.628788e-04	ci right 6.389250e-04	k: 972	n:1620000
KS ci ratio: 3.560795e-03	ci left: 4.271898e-01	ci right 4.287142e-01	k: 693282	n:1620000
ODAM   1620000 perm   1276 sec   (1270 perm/sec)   p_kst 4.279519e-01   p_cons 6.000000e-04   p_joint 6.248148e-03

Joint ci ratio: 3.872463e-02	ci left: 6.126244e-03	ci right 6.368767e-03	k: 10182	n:1630000
Cons ci ratio: 1.252461e-01	ci left: 5.629910e-04	ci right 6.388016e-04	k: 978	n:1630000
KS ci ratio: 3.549835e-03	ci left: 4.271949e-01	ci right 4.287146e-01	k: 697566	n:1630000
ODAM   1630000 perm   1290 sec   (1264 perm/sec)   p_kst 4.279546e-01   p_cons 6.000000e-04   p_joint 6.246626e-03

Joint ci ratio: 3.859591e-02	ci left: 6.129952e-03	ci right 6.371797e-03	k: 10250	n:1640000
Cons ci ratio: 1.247374e-01	ci left: 5.642837e-04	ci right 6.399370e-04	k: 986	n:1640000
KS ci ratio: 3.538849e-03	ci left: 4.272176e-01	ci right 4.287327e-01	k: 701879	n:1640000
ODAM   1640000 perm   1304 sec   (1258 perm/sec)   p_kst 4.279750e-01   p_cons 6.012195e-04   p_joint 6.250000e-03

Joint ci ratio: 3.850039e-02	ci left: 6.123411e-03	ci right 6.364387e-03	k: 10301	n:1650000
Cons ci ratio: 1.242974e-01	ci left: 5.649741e-04	ci right 6.404330e-04	k: 993	n:1650000
KS ci ratio: 3.528273e-03	ci left: 4.271970e-01	ci right 4.287075e-01	k: 706121	n:1650000
ODAM   1650000 perm   1318 sec   (1252 perm/sec)   p_kst 4.279521e-01   p_cons 6.018182e-04   p_joint 6.243030e-03

Joint ci ratio: 3.839252e-02	ci left: 6.121127e-03	ci right 6.361323e-03	k: 10359	n:1660000
Cons ci ratio: 1.241726e-01	ci left: 5.627380e-04	ci right 6.378173e-04	k: 995	n:1660000
KS ci ratio: 3.517792e-03	ci left: 4.271767e-01	ci right 4.286826e-01	k: 710363	n:1660000
ODAM   1660000 perm   1332 sec   (1246 perm/sec)   p_kst 4.279295e-01   p_cons 5.993976e-04   p_joint 6.240361e-03

Joint ci ratio: 3.828185e-02	ci left: 6.120057e-03	ci right 6.359504e-03	k: 10419	n:1670000
Cons ci ratio: 1.238003e-01	ci left: 5.628497e-04	ci right 6.377022e-04	k: 1001	n:1670000
KS ci ratio: 3.507713e-03	ci left: 4.271135e-01	ci right 4.286149e-01	k: 714533	n:1670000
ODAM   1670000 perm   1346 sec   (1241 perm/sec)   p_kst 4.278641e-01   p_cons 5.994012e-04   p_joint 6.238922e-03

Joint ci ratio: 3.816115e-02	ci left: 6.122539e-03	ci right 6.361311e-03	k: 10485	n:1680000
Cons ci ratio: 1.235540e-01	ci left: 5.618066e-04	ci right 6.363610e-04	k: 1005	n:1680000
KS ci ratio: 3.497256e-03	ci left: 4.271160e-01	ci right 4.286129e-01	k: 718812	n:1680000
ODAM   1680000 perm   1360 sec   (1235 perm/sec)   p_kst 4.278643e-01   p_cons 5.982143e-04   p_joint 6.241071e-03

Joint ci ratio: 3.803976e-02	ci left: 6.125578e-03	ci right 6.363693e-03	k: 10552	n:1690000
Cons ci ratio: 1.229443e-01	ci left: 5.642171e-04	ci right 6.386950e-04	k: 1015	n:1690000
KS ci ratio: 3.486720e-03	ci left: 4.271426e-01	ci right 4.286351e-01	k: 723132	n:1690000
ODAM   1690000 perm   1374 sec   (1230 perm/sec)   p_kst 4.278888e-01   p_cons 6.005917e-04   p_joint 6.243787e-03

Joint ci ratio: 3.802234e-02	ci left: 6.095370e-03	ci right 6.332199e-03	k: 10562	n:1700000
Cons ci ratio: 1.225229e-01	ci left: 5.648894e-04	ci right 6.391819e-04	k: 1022	n:1700000
KS ci ratio: 3.476825e-03	ci left: 4.270920e-01	ci right 4.285800e-01	k: 727321	n:1700000
ODAM   1700000 perm   1388 sec   (1224 perm/sec)   p_kst 4.278359e-01   p_cons 6.011765e-04   p_joint 6.212941e-03

Joint ci ratio: 3.812851e-02	ci left: 6.026125e-03	ci right 6.260932e-03	k: 10504	n:1710000
Cons ci ratio: 1.220466e-01	ci left: 5.661213e-04	ci right 6.402654e-04	k: 1030	n:1710000
KS ci ratio: 3.466521e-03	ci left: 4.271115e-01	ci right 4.285952e-01	k: 731629	n:1710000
ODAM   1710000 perm   1403 sec   (1219 perm/sec)   p_kst 4.278532e-01   p_cons 6.023392e-04   p_joint 6.142690e-03

Joint ci ratio: 3.800563e-02	ci left: 6.030249e-03	ci right 6.264442e-03	k: 10572	n:1720000
Cons ci ratio: 1.216930e-01	ci left: 5.662119e-04	ci right 6.401376e-04	k: 1036	n:1720000
KS ci ratio: 3.456452e-03	ci left: 4.271104e-01	ci right 4.285898e-01	k: 735902	n:1720000
ODAM   1720000 perm   1417 sec   (1214 perm/sec)   p_kst 4.278500e-01   p_cons 6.023256e-04   p_joint 6.146512e-03

Joint ci ratio: 3.806249e-02	ci left: 5.977640e-03	ci right 6.210145e-03	k: 10541	n:1730000
Cons ci ratio: 1.212262e-01	ci left: 5.674228e-04	ci right 6.412020e-04	k: 1044	n:1730000
KS ci ratio: 3.446499e-03	ci left: 4.271053e-01	ci right 4.285805e-01	k: 740168	n:1730000
ODAM   1730000 perm   1432 sec   (1208 perm/sec)   p_kst 4.278428e-01   p_cons 6.034682e-04   p_joint 6.093064e-03

Joint ci ratio: 3.796725e-02	ci left: 5.973456e-03	ci right 6.205204e-03	k: 10594	n:1740000
Cons ci ratio: 1.208222e-01	ci left: 5.680630e-04	ci right 6.416617e-04	k: 1051	n:1740000
KS ci ratio: 3.436486e-03	ci left: 4.271210e-01	ci right 4.285919e-01	k: 744470	n:1740000
ODAM   1740000 perm   1447 sec   (1203 perm/sec)   p_kst 4.278563e-01   p_cons 6.040230e-04   p_joint 6.088506e-03

Joint ci ratio: 3.786379e-02	ci left: 5.972150e-03	ci right 6.203203e-03	k: 10652	n:1750000
Cons ci ratio: 1.204791e-01	ci left: 5.681420e-04	ci right 6.415270e-04	k: 1057	n:1750000
KS ci ratio: 3.426756e-03	ci left: 4.271085e-01	ci right 4.285752e-01	k: 748723	n:1750000
ODAM   1750000 perm   1463 sec   (1196 perm/sec)   p_kst 4.278417e-01   p_cons 6.040000e-04   p_joint 6.086857e-03

Joint ci ratio: 3.773813e-02	ci left: 5.978178e-03	ci right 6.208679e-03	k: 10723	n:1760000
Cons ci ratio: 1.198575e-01	ci left: 5.709761e-04	ci right 6.443197e-04	k: 1068	n:1760000
KS ci ratio: 3.417036e-03	ci left: 4.271064e-01	ci right 4.285689e-01	k: 752994	n:1760000
ODAM   1760000 perm   1478 sec   (1191 perm/sec)   p_kst 4.278375e-01   p_cons 6.068182e-04   p_joint 6.092614e-03

Joint ci ratio: 3.790808e-02	ci left: 5.891233e-03	ci right 6.119428e-03	k: 10628	n:1770000
Cons ci ratio: 1.196898e-01	ci left: 5.693944e-04	ci right 6.424252e-04	k: 1071	n:1770000
KS ci ratio: 3.407363e-03	ci left: 4.271094e-01	ci right 4.285677e-01	k: 757274	n:1770000
ODAM   1770000 perm   1496 sec   (1183 perm/sec)   p_kst 4.278384e-01   p_cons 6.050847e-04   p_joint 6.004520e-03

Joint ci ratio: 3.780688e-02	ci left: 5.889855e-03	ci right 6.117374e-03	k: 10685	n:1780000
Cons ci ratio: 1.193009e-01	ci left: 5.700106e-04	ci right 6.428661e-04	k: 1078	n:1780000
KS ci ratio: 3.397843e-03	ci left: 4.271022e-01	ci right 4.285564e-01	k: 761536	n:1780000
ODAM   1780000 perm   1511 sec   (1178 perm/sec)   p_kst 4.278292e-01   p_cons 6.056180e-04   p_joint 6.002809e-03

Joint ci ratio: 3.766770e-02	ci left: 5.900669e-03	ci right 6.127749e-03	k: 10764	n:1790000
Cons ci ratio: 1.188063e-01	ci left: 5.717044e-04	ci right 6.444522e-04	k: 1087	n:1790000
KS ci ratio: 3.388378e-03	ci left: 4.270985e-01	ci right 4.285487e-01	k: 765804	n:1790000
ODAM   1790000 perm   1526 sec   (1173 perm/sec)   p_kst 4.278235e-01   p_cons 6.072626e-04   p_joint 6.013408e-03

Joint ci ratio: 3.750048e-02	ci left: 5.920721e-03	ci right 6.147539e-03	k: 10860	n:1800000
Cons ci ratio: 1.183718e-01	ci left: 5.728409e-04	ci right 6.454482e-04	k: 1095	n:1800000
KS ci ratio: 3.378789e-03	ci left: 4.271243e-01	ci right 4.285704e-01	k: 770125	n:1800000
ODAM   1800000 perm   1542 sec   (1168 perm/sec)   p_kst 4.278472e-01   p_cons 6.083333e-04   p_joint 6.033333e-03

Joint ci ratio: 3.739733e-02	ci left: 5.920849e-03	ci right 6.147034e-03	k: 10920	n:1810000
Cons ci ratio: 1.181028e-01	ci left: 5.723567e-04	ci right 6.447262e-04	k: 1100	n:1810000
KS ci ratio: 3.369577e-03	ci left: 4.271067e-01	ci right 4.285488e-01	k: 774368	n:1810000
ODAM   1810000 perm   1557 sec   (1162 perm/sec)   p_kst 4.278276e-01   p_cons 6.077348e-04   p_joint 6.033149e-03

Joint ci ratio: 3.723707e-02	ci left: 5.939484e-03	ci right 6.165389e-03	k: 11014	n:1820000
Cons ci ratio: 1.178889e-01	ci left: 5.713448e-04	ci right 6.434465e-04	k: 1104	n:1820000
KS ci ratio: 3.360172e-03	ci left: 4.271283e-01	ci right 4.285664e-01	k: 778682	n:1820000
ODAM   1820000 perm   1573 sec   (1157 perm/sec)   p_kst 4.278473e-01   p_cons 6.065934e-04   p_joint 6.051648e-03

Joint ci ratio: 3.728027e-02	ci left: 5.893491e-03	ci right 6.117912e-03	k: 10989	n:1830000
Cons ci ratio: 1.174116e-01	ci left: 5.729961e-04	ci right 6.449930e-04	k: 1113	n:1830000
KS ci ratio: 3.351235e-03	ci left: 4.270928e-01	ci right 4.285271e-01	k: 782892	n:1830000
ODAM   1830000 perm   1588 sec   (1153 perm/sec)   p_kst 4.278098e-01   p_cons 6.081967e-04   p_joint 6.004918e-03

Joint ci ratio: 3.716370e-02	ci left: 5.898613e-03	ci right 6.122511e-03	k: 11058	n:1840000
Cons ci ratio: 1.172015e-01	ci left: 5.719921e-04	ci right 6.437253e-04	k: 1117	n:1840000
KS ci ratio: 3.341675e-03	ci left: 4.271594e-01	ci right 4.285897e-01	k: 787289	n:1840000
ODAM   1840000 perm   1603 sec   (1148 perm/sec)   p_kst 4.278745e-01   p_cons 6.070652e-04   p_joint 6.009783e-03

Joint ci ratio: 3.707672e-02	ci left: 5.894576e-03	ci right 6.117786e-03	k: 11110	n:1850000
Cons ci ratio: 1.168362e-01	ci left: 5.725732e-04	ci right 6.441402e-04	k: 1124	n:1850000
KS ci ratio: 3.332402e-03	ci left: 4.271950e-01	ci right 4.286215e-01	k: 791630	n:1850000
ODAM   1850000 perm   1618 sec   (1143 perm/sec)   p_kst 4.279081e-01   p_cons 6.075676e-04   p_joint 6.005405e-03

Joint ci ratio: 3.698034e-02	ci left: 5.893778e-03	ci right 6.116366e-03	k: 11168	n:1860000
Cons ci ratio: 1.166292e-01	ci left: 5.715826e-04	ci right 6.428904e-04	k: 1128	n:1860000
KS ci ratio: 3.323870e-03	ci left: 4.271324e-01	ci right 4.285550e-01	k: 795789	n:1860000
ODAM   1860000 perm   1634 sec   (1138 perm/sec)   p_kst 4.278435e-01   p_cons 6.064516e-04   p_joint 6.004301e-03

Joint ci ratio: 3.689298e-02	ci left: 5.890341e-03	ci right 6.112262e-03	k: 11221	n:1870000
Cons ci ratio: 1.163718e-01	ci left: 5.711219e-04	ci right 6.422042e-04	k: 1133	n:1870000
KS ci ratio: 3.314882e-03	ci left: 4.271474e-01	ci right 4.285662e-01	k: 800092	n:1870000
ODAM   1870000 perm   1650 sec   (1134 perm/sec)   p_kst 4.278567e-01   p_cons 6.058824e-04   p_joint 6.000535e-03

Joint ci ratio: 3.680624e-02	ci left: 5.886941e-03	ci right 6.108202e-03	k: 11274	n:1880000
Cons ci ratio: 1.160651e-01	ci left: 5.711827e-04	ci right 6.420724e-04	k: 1139	n:1880000
KS ci ratio: 3.306067e-03	ci left: 4.271474e-01	ci right 4.285624e-01	k: 804367	n:1880000
ODAM   1880000 perm   1665 sec   (1129 perm/sec)   p_kst 4.278548e-01   p_cons 6.058511e-04   p_joint 5.996809e-03

Joint ci ratio: 3.625141e-02	ci left: 6.037198e-03	ci right 6.260615e-03	k: 11620	n:1890000
Cons ci ratio: 1.157609e-01	ci left: 5.712432e-04	ci right 6.419418e-04	k: 1145	n:1890000
KS ci ratio: 3.297568e-03	ci left: 4.271109e-01	ci right 4.285221e-01	k: 808573	n:1890000
ODAM   1890000 perm   1681 sec   (1124 perm/sec)   p_kst 4.278164e-01   p_cons 6.058201e-04   p_joint 6.148148e-03

Joint ci ratio: 3.616287e-02	ci left: 6.035152e-03	ci right 6.257936e-03	k: 11677	n:1900000
Cons ci ratio: 1.157106e-01	ci left: 5.687477e-04	ci right 6.391048e-04	k: 1146	n:1900000
KS ci ratio: 3.288925e-03	ci left: 4.271058e-01	ci right 4.285134e-01	k: 812838	n:1900000
ODAM   1900000 perm   1698 sec   (1119 perm/sec)   p_kst 4.278095e-01   p_cons 6.031579e-04   p_joint 6.145789e-03

Joint ci ratio: 3.601328e-02	ci left: 6.053883e-03	ci right 6.276415e-03	k: 11774	n:1910000
Cons ci ratio: 1.155597e-01	ci left: 5.672952e-04	ci right 6.373748e-04	k: 1149	n:1910000
KS ci ratio: 3.280234e-03	ci left: 4.271181e-01	ci right 4.285219e-01	k: 817136	n:1910000
ODAM   1910000 perm   1714 sec   (1114 perm/sec)   p_kst 4.278199e-01   p_cons 6.015707e-04   p_joint 6.164398e-03

Joint ci ratio: 3.592494e-02	ci left: 6.052288e-03	ci right 6.274205e-03	k: 11832	n:1920000
Cons ci ratio: 1.153093e-01	ci left: 5.668695e-04	ci right 6.367345e-04	k: 1154	n:1920000
KS ci ratio: 3.271640e-03	ci left: 4.271261e-01	ci right 4.285262e-01	k: 821426	n:1920000
ODAM   1920000 perm   1730 sec   (1110 perm/sec)   p_kst 4.278260e-01   p_cons 6.010417e-04   p_joint 6.162500e-03

Joint ci ratio: 3.584332e-02	ci left: 6.048658e-03	ci right 6.269927e-03	k: 11886	n:1930000
Cons ci ratio: 1.151102e-01	ci left: 5.659451e-04	ci right 6.355676e-04	k: 1158	n:1930000
KS ci ratio: 3.262843e-03	ci left: 4.271744e-01	ci right 4.285709e-01	k: 825794	n:1930000
ODAM   1930000 perm   1746 sec   (1105 perm/sec)   p_kst 4.278725e-01   p_cons 6.000000e-04   p_joint 6.158549e-03

Joint ci ratio: 3.551619e-02	ci left: 6.129363e-03	ci right 6.351496e-03	k: 12105	n:1940000
Cons ci ratio: 1.147641e-01	ci left: 5.665324e-04	ci right 6.360034e-04	k: 1165	n:1940000
KS ci ratio: 3.254384e-03	ci left: 4.271820e-01	ci right 4.285749e-01	k: 830084	n:1940000
ODAM   1940000 perm   1763 sec   (1101 perm/sec)   p_kst 4.278784e-01   p_cons 6.005155e-04   p_joint 6.239691e-03

Joint ci ratio: 3.543878e-02	ci left: 6.124868e-03	ci right 6.346345e-03	k: 12158	n:1950000
Cons ci ratio: 1.146169e-01	ci left: 5.651214e-04	ci right 6.343244e-04	k: 1168	n:1950000
KS ci ratio: 3.245899e-03	ci left: 4.272034e-01	ci right 4.285928e-01	k: 834401	n:1950000
ODAM   1950000 perm   1779 sec   (1096 perm/sec)   p_kst 4.278979e-01   p_cons 5.989744e-04   p_joint 6.234872e-03

Joint ci ratio: 3.540421e-02	ci left: 6.105755e-03	ci right 6.326321e-03	k: 12182	n:1960000
Cons ci ratio: 1.143725e-01	ci left: 5.647161e-04	ci right 6.337121e-04	k: 1173	n:1960000
KS ci ratio: 3.237662e-03	ci left: 4.271970e-01	ci right 4.285828e-01	k: 838664	n:1960000
ODAM   1960000 perm   1795 sec   (1092 perm/sec)   p_kst 4.278898e-01   p_cons 5.984694e-04   p_joint 6.215306e-03

Joint ci ratio: 3.536827e-02	ci left: 6.087338e-03	ci right 6.307011e-03	k: 12207	n:1970000
Cons ci ratio: 1.141783e-01	ci left: 5.638219e-04	ci right 6.325838e-04	k: 1177	n:1970000
KS ci ratio: 3.229380e-03	ci left: 4.272069e-01	ci right 4.285892e-01	k: 842959	n:1970000
ODAM   1970000 perm   1812 sec   (1087 perm/sec)   p_kst 4.278980e-01   p_cons 5.974619e-04   p_joint 6.196447e-03

Joint ci ratio: 3.529617e-02	ci left: 6.081623e-03	ci right 6.300633e-03	k: 12257	n:1980000
Cons ci ratio: 1.138405e-01	ci left: 5.644089e-04	ci right 6.330250e-04	k: 1184	n:1980000
KS ci ratio: 3.221265e-03	ci left: 4.272011e-01	ci right 4.285799e-01	k: 847223	n:1980000
ODAM   1980000 perm   1829 sec   (1083 perm/sec)   p_kst 4.278904e-01   p_cons 5.979798e-04   p_joint 6.190404e-03

Joint ci ratio: 3.542490e-02	ci left: 6.007228e-03	ci right 6.224364e-03	k: 12169	n:1990000
Cons ci ratio: 1.134581e-01	ci left: 5.654785e-04	ci right 6.339783e-04	k: 1192	n:1990000
KS ci ratio: 3.213118e-03	ci left: 4.272094e-01	ci right 4.285848e-01	k: 851515	n:1990000
ODAM   1990000 perm   1845 sec   (1078 perm/sec)   p_kst 4.278970e-01   p_cons 5.989950e-04   p_joint 6.115075e-03

Joint ci ratio: 3.541520e-02	ci left: 5.980659e-03	ci right 6.196775e-03	k: 12176	n:2000000
Cons ci ratio: 1.132211e-01	ci left: 5.650802e-04	ci right 6.333793e-04	k: 1197	n:2000000
KS ci ratio: 3.205081e-03	ci left: 4.272101e-01	ci right 4.285821e-01	k: 855792	n:2000000
ODAM   2000000 perm   1862 sec   (1074 perm/sec)   p_kst 4.278960e-01   p_cons 5.985000e-04   p_joint 6.088000e-03

Joint ci ratio: 3.532537e-02	ci left: 5.981478e-03	ci right 6.197063e-03	k: 12238	n:2010000
Cons ci ratio: 1.128918e-01	ci left: 5.656530e-04	ci right 6.338092e-04	k: 1204	n:2010000
KS ci ratio: 3.197105e-03	ci left: 4.272109e-01	ci right 4.285794e-01	k: 860069	n:2010000
ODAM   2010000 perm   1879 sec   (1070 perm/sec)   p_kst 4.278950e-01   p_cons 5.990050e-04   p_joint 6.088557e-03

Joint ci ratio: 3.551913e-02	ci left: 5.887094e-03	ci right 6.100465e-03	k: 12106	n:2020000
Cons ci ratio: 1.125188e-01	ci left: 5.667015e-04	ci right 6.347435e-04	k: 1212	n:2020000
KS ci ratio: 3.189178e-03	ci left: 4.272131e-01	ci right 4.285782e-01	k: 864349	n:2020000
ODAM   2020000 perm   1895 sec   (1066 perm/sec)   p_kst 4.278955e-01   p_cons 6.000000e-04   p_joint 5.993069e-03

Joint ci ratio: 3.557586e-02	ci left: 5.839538e-03	ci right 6.051530e-03	k: 12068	n:2030000
Cons ci ratio: 1.122876e-01	ci left: 5.663037e-04	ci right 6.341489e-04	k: 1217	n:2030000
KS ci ratio: 3.181441e-03	ci left: 4.271951e-01	ci right 4.285568e-01	k: 868588	n:2030000
ODAM   2030000 perm   1912 sec   (1061 perm/sec)   p_kst 4.278759e-01   p_cons 5.995074e-04   p_joint 5.944828e-03

Joint ci ratio: 3.549364e-02	ci left: 5.838120e-03	ci right 6.049561e-03	k: 12124	n:2040000
Cons ci ratio: 1.121038e-01	ci left: 5.654334e-04	ci right 6.330562e-04	k: 1221	n:2040000
KS ci ratio: 3.173675e-03	ci left: 4.271905e-01	ci right 4.285489e-01	k: 872854	n:2040000
ODAM   2040000 perm   1931 sec   (1057 perm/sec)   p_kst 4.278696e-01   p_cons 5.985294e-04   p_joint 5.943137e-03

Joint ci ratio: 3.540907e-02	ci left: 5.837683e-03	ci right 6.048594e-03	k: 12182	n:2050000
Cons ci ratio: 1.115572e-01	ci left: 5.683652e-04	ci right 6.359853e-04	k: 1233	n:2050000
KS ci ratio: 3.166005e-03	ci left: 4.271796e-01	ci right 4.285347e-01	k: 877107	n:2050000
ODAM   2050000 perm   1948 sec   (1052 perm/sec)   p_kst 4.278571e-01   p_cons 6.014634e-04   p_joint 5.942439e-03

Joint ci ratio: 3.532655e-02	ci left: 5.836770e-03	ci right 6.047147e-03	k: 12239	n:2060000
Cons ci ratio: 1.112870e-01	ci left: 5.684376e-04	ci right 6.358918e-04	k: 1239	n:2060000
KS ci ratio: 3.158282e-03	ci left: 4.271859e-01	ci right 4.285376e-01	k: 881395	n:2060000
ODAM   2060000 perm   1965 sec   (1048 perm/sec)   p_kst 4.278617e-01   p_cons 6.014563e-04   p_joint 5.941262e-03

Joint ci ratio: 3.481429e-02	ci left: 5.981448e-03	ci right 6.193851e-03	k: 12600	n:2070000
Cons ci ratio: 1.108852e-01	ci left: 5.699186e-04	ci right 6.372884e-04	k: 1248	n:2070000
KS ci ratio: 3.150603e-03	ci left: 4.271940e-01	ci right 4.285425e-01	k: 885687	n:2070000
ODAM   2070000 perm   1983 sec   (1044 perm/sec)   p_kst 4.278681e-01   p_cons 6.028986e-04   p_joint 6.086957e-03

Joint ci ratio: 3.472757e-02	ci left: 5.982716e-03	ci right 6.194624e-03	k: 12663	n:2080000
Cons ci ratio: 1.104439e-01	ci left: 5.718532e-04	ci right 6.391652e-04	k: 1258	n:2080000
KS ci ratio: 3.143081e-03	ci left: 4.271861e-01	ci right 4.285314e-01	k: 889946	n:2080000
ODAM   2080000 perm   2000 sec   (1040 perm/sec)   p_kst 4.278587e-01   p_cons 6.048077e-04   p_joint 6.087981e-03

Joint ci ratio: 3.471567e-02	ci left: 5.958358e-03	ci right 6.169330e-03	k: 12672	n:2090000
Cons ci ratio: 1.100511e-01	ci left: 5.733046e-04	ci right 6.405319e-04	k: 1267	n:2090000
KS ci ratio: 3.135281e-03	ci left: 4.272300e-01	ci right 4.285721e-01	k: 894313	n:2090000
ODAM   2090000 perm   2018 sec   (1036 perm/sec)   p_kst 4.279010e-01   p_cons 6.062201e-04   p_joint 6.063158e-03

Joint ci ratio: 3.464611e-02	ci left: 5.954060e-03	ci right 6.164449e-03	k: 12723	n:2100000
Cons ci ratio: 1.097486e-01	ci left: 5.738163e-04	ci right 6.409066e-04	k: 1274	n:2100000
KS ci ratio: 3.127832e-03	ci left: 4.272278e-01	ci right 4.285667e-01	k: 898584	n:2100000
ODAM   2100000 perm   2035 sec   (1032 perm/sec)   p_kst 4.278971e-01   p_cons 6.066667e-04   p_joint 6.058571e-03

Joint ci ratio: 3.476500e-02	ci left: 5.885433e-03	ci right 6.094125e-03	k: 12637	n:2110000
Cons ci ratio: 1.093632e-01	ci left: 5.752453e-04	ci right 6.422514e-04	k: 1283	n:2110000
KS ci ratio: 3.120586e-03	ci left: 4.272019e-01	ci right 4.285376e-01	k: 902805	n:2110000
ODAM   2110000 perm   2054 sec   (1027 perm/sec)   p_kst 4.278697e-01   p_cons 6.080569e-04   p_joint 5.989100e-03

Joint ci ratio: 3.345624e-02	ci left: 6.326307e-03	ci right 6.542026e-03	k: 13639	n:2120000
Cons ci ratio: 1.092358e-01	ci left: 5.739083e-04	ci right 6.406757e-04	k: 1286	n:2120000
KS ci ratio: 3.113247e-03	ci left: 4.271989e-01	ci right 4.285314e-01	k: 907074	n:2120000
ODAM   2120000 perm   2073 sec   (1023 perm/sec)   p_kst 4.278651e-01   p_cons 6.066038e-04   p_joint 6.433491e-03

Joint ci ratio: 3.455754e-02	ci left: 5.900915e-03	ci right 6.108882e-03	k: 12789	n:2130000
Cons ci ratio: 1.090665e-01	ci left: 5.730405e-04	ci right 6.395970e-04	k: 1290	n:2130000
KS ci ratio: 3.106007e-03	ci left: 4.271885e-01	ci right 4.285178e-01	k: 911327	n:2130000
ODAM   2130000 perm   2090 sec   (1019 perm/sec)   p_kst 4.278531e-01   p_cons 6.056338e-04   p_joint 6.004225e-03

Joint ci ratio: 3.449027e-02	ci left: 5.896503e-03	ci right 6.103903e-03	k: 12839	n:2140000
Cons ci ratio: 1.089822e-01	ci left: 5.712718e-04	ci right 6.375683e-04	k: 1292	n:2140000
KS ci ratio: 3.098950e-03	ci left: 4.271571e-01	ci right 4.284833e-01	k: 915535	n:2140000
ODAM   2140000 perm   2108 sec   (1015 perm/sec)   p_kst 4.278201e-01   p_cons 6.037383e-04   p_joint 5.999533e-03

Joint ci ratio: 3.440863e-02	ci left: 5.897205e-03	ci right 6.104129e-03	k: 12900	n:2150000
Cons ci ratio: 1.088560e-01	ci left: 5.699721e-04	ci right 6.360363e-04	k: 1295	n:2150000
KS ci ratio: 3.091594e-03	ci left: 4.271808e-01	ci right 4.285040e-01	k: 919861	n:2150000
ODAM   2150000 perm   2126 sec   (1011 perm/sec)   p_kst 4.278423e-01   p_cons 6.023256e-04   p_joint 6.000000e-03

Joint ci ratio: 3.412422e-02	ci left: 5.968591e-03	ci right 6.176255e-03	k: 13115	n:2160000
Cons ci ratio: 1.085216e-01	ci left: 5.709363e-04	ci right 6.368960e-04	k: 1303	n:2160000
KS ci ratio: 3.084355e-03	ci left: 4.271942e-01	ci right 4.285143e-01	k: 924165	n:2160000
ODAM   2160000 perm   2144 sec   (1008 perm/sec)   p_kst 4.278542e-01   p_cons 6.032407e-04   p_joint 6.071759e-03

Joint ci ratio: 3.275908e-02	ci left: 6.447900e-03	ci right 6.663097e-03	k: 14224	n:2170000
Cons ci ratio: 1.083556e-01	ci left: 5.700986e-04	ci right 6.358543e-04	k: 1307	n:2170000
KS ci ratio: 3.077453e-03	ci left: 4.271619e-01	ci right 4.284789e-01	k: 928370	n:2170000
ODAM   2170000 perm   2162 sec   (1004 perm/sec)   p_kst 4.278203e-01   p_cons 6.023041e-04   p_joint 6.554839e-03

Joint ci ratio: 3.242287e-02	ci left: 6.552547e-03	ci right 6.768950e-03	k: 14519	n:2180000
Cons ci ratio: 1.081491e-01	ci left: 5.697150e-04	ci right 6.352932e-04	k: 1312	n:2180000
KS ci ratio: 3.070496e-03	ci left: 4.271458e-01	ci right 4.284598e-01	k: 932610	n:2180000
ODAM   2180000 perm   2180 sec   (1000 perm/sec)   p_kst 4.278028e-01   p_cons 6.018349e-04   p_joint 6.660092e-03

Joint ci ratio: 3.263789e-02	ci left: 6.437021e-03	ci right 6.651045e-03	k: 14330	n:2190000
Cons ci ratio: 1.079438e-01	ci left: 5.693349e-04	ci right 6.347371e-04	k: 1317	n:2190000
KS ci ratio: 3.063718e-03	ci left: 4.271090e-01	ci right 4.284200e-01	k: 936804	n:2190000
ODAM   2190000 perm   2200 sec   (995 perm/sec)   p_kst 4.277644e-01   p_cons 6.013699e-04   p_joint 6.543379e-03

Joint ci ratio: 3.263494e-02	ci left: 6.409113e-03	ci right 6.622190e-03	k: 14333	n:2200000
Cons ci ratio: 1.077396e-01	ci left: 5.689585e-04	ci right 6.341859e-04	k: 1322	n:2200000
KS ci ratio: 3.056735e-03	ci left: 4.271125e-01	ci right 4.284205e-01	k: 941086	n:2200000
ODAM   2200000 perm   2218 sec   (992 perm/sec)   p_kst 4.277664e-01   p_cons 6.009091e-04   p_joint 6.515000e-03

Joint ci ratio: 3.284130e-02	ci left: 6.300223e-03	ci right 6.511029e-03	k: 14155	n:2210000
Cons ci ratio: 1.076990e-01	ci left: 5.668242e-04	ci right 6.317810e-04	k: 1323	n:2210000
KS ci ratio: 3.049985e-03	ci left: 4.270860e-01	ci right 4.283911e-01	k: 945302	n:2210000
ODAM   2210000 perm   2237 sec   (988 perm/sec)   p_kst 4.277385e-01   p_cons 5.986425e-04   p_joint 6.404977e-03

Joint ci ratio: 3.238557e-02	ci left: 6.450115e-03	ci right 6.662887e-03	k: 14554	n:2220000
Cons ci ratio: 1.076179e-01	ci left: 5.651476e-04	ci right 6.298603e-04	k: 1325	n:2220000
KS ci ratio: 3.043148e-03	ci left: 4.270810e-01	ci right 4.283831e-01	k: 949565	n:2220000
ODAM   2220000 perm   2257 sec   (983 perm/sec)   p_kst 4.277320e-01   p_cons 5.968468e-04   p_joint 6.555856e-03

Joint ci ratio: 3.322830e-02	ci left: 6.099172e-03	ci right 6.305701e-03	k: 13830	n:2230000
Cons ci ratio: 1.073349e-01	ci left: 5.656679e-04	ci right 6.302592e-04	k: 1332	n:2230000
KS ci ratio: 3.036488e-03	ci left: 4.270550e-01	ci right 4.283542e-01	k: 953781	n:2230000
ODAM   2230000 perm   2277 sec   (980 perm/sec)   p_kst 4.277045e-01   p_cons 5.973094e-04   p_joint 6.201794e-03

Joint ci ratio: 3.316128e-02	ci left: 6.096736e-03	ci right 6.302758e-03	k: 13886	n:2240000
Cons ci ratio: 1.072144e-01	ci left: 5.644460e-04	ci right 6.288208e-04	k: 1335	n:2240000
KS ci ratio: 3.029736e-03	ci left: 4.270511e-01	ci right 4.283473e-01	k: 958046	n:2240000
ODAM   2240000 perm   2295 sec   (976 perm/sec)   p_kst 4.276991e-01   p_cons 5.959821e-04   p_joint 6.199107e-03

Joint ci ratio: 3.143068e-02	ci left: 6.757854e-03	ci right 6.974085e-03	k: 15447	n:2250000
Cons ci ratio: 1.068948e-01	ci left: 5.653977e-04	ci right 6.296767e-04	k: 1343	n:2250000
KS ci ratio: 3.022943e-03	ci left: 4.270610e-01	ci right 4.283543e-01	k: 962342	n:2250000
ODAM   2250000 perm   2314 sec   (972 perm/sec)   p_kst 4.277076e-01   p_cons 5.968889e-04   p_joint 6.865333e-03

Joint ci ratio: 3.220645e-02	ci left: 6.407493e-03	ci right 6.617668e-03	k: 14717	n:2260000
Cons ci ratio: 1.066570e-01	ci left: 5.654799e-04	ci right 6.296163e-04	k: 1349	n:2260000
KS ci ratio: 3.016415e-03	ci left: 4.270354e-01	ci right 4.283259e-01	k: 966558	n:2260000
ODAM   2260000 perm   2333 sec   (969 perm/sec)   p_kst 4.276805e-01   p_cons 5.969027e-04   p_joint 6.511947e-03

Joint ci ratio: 3.265888e-02	ci left: 6.203599e-03	ci right 6.409998e-03	k: 14315	n:2270000
Cons ci ratio: 1.063423e-01	ci left: 5.664192e-04	ci right 6.304607e-04	k: 1357	n:2270000
KS ci ratio: 3.009922e-03	ci left: 4.270109e-01	ci right 4.282985e-01	k: 970776	n:2270000
ODAM   2270000 perm   2352 sec   (965 perm/sec)   p_kst 4.276546e-01   p_cons 5.977974e-04   p_joint 6.306167e-03

Joint ci ratio: 3.257244e-02	ci left: 6.209452e-03	ci right 6.415489e-03	k: 14391	n:2280000
Cons ci ratio: 1.059916e-01	ci left: 5.677775e-04	ci right 6.317476e-04	k: 1366	n:2280000
KS ci ratio: 3.003157e-03	ci left: 4.270380e-01	ci right 4.283228e-01	k: 975111	n:2280000
ODAM   2280000 perm   2371 sec   (962 perm/sec)   p_kst 4.276803e-01   p_cons 5.991228e-04   p_joint 6.311842e-03

Joint ci ratio: 3.249686e-02	ci left: 6.211357e-03	ci right 6.416969e-03	k: 14458	n:2290000
Cons ci ratio: 1.058369e-01	ci left: 5.669985e-04	ci right 6.307819e-04	k: 1370	n:2290000
KS ci ratio: 2.996595e-03	ci left: 4.270390e-01	ci right 4.283210e-01	k: 979387	n:2290000
ODAM   2290000 perm   2392 sec   (957 perm/sec)   p_kst 4.276799e-01   p_cons 5.982533e-04   p_joint 6.313537e-03

Joint ci ratio: 3.242405e-02	ci left: 6.212382e-03	ci right 6.417559e-03	k: 14523	n:2300000
Cons ci ratio: 1.055677e-01	ci left: 5.674963e-04	ci right 6.311633e-04	k: 1377	n:2300000
KS ci ratio: 2.989919e-03	ci left: 4.270657e-01	ci right 4.283449e-01	k: 983722	n:2300000
ODAM   2300000 perm   2412 sec   (953 perm/sec)   p_kst 4.277052e-01   p_cons 5.986957e-04   p_joint 6.314348e-03

Joint ci ratio: 3.235731e-02	ci left: 6.211253e-03	ci right 6.415962e-03	k: 14583	n:2310000
Cons ci ratio: 1.053768e-01	ci left: 5.671470e-04	ci right 6.306526e-04	k: 1382	n:2310000
KS ci ratio: 2.983182e-03	ci left: 4.271095e-01	ci right 4.283859e-01	k: 988097	n:2310000
ODAM   2310000 perm   2431 sec   (950 perm/sec)   p_kst 4.277476e-01   p_cons 5.982684e-04   p_joint 6.312987e-03

Joint ci ratio: 3.249028e-02	ci left: 6.134026e-03	ci right 6.337037e-03	k: 14465	n:2320000
Cons ci ratio: 1.051111e-01	ci left: 5.676403e-04	ci right 6.310309e-04	k: 1389	n:2320000
KS ci ratio: 2.976778e-03	ci left: 4.271055e-01	ci right 4.283792e-01	k: 992362	n:2320000
ODAM   2320000 perm   2451 sec   (947 perm/sec)   p_kst 4.277422e-01   p_cons 5.987069e-04   p_joint 6.234914e-03

Joint ci ratio: 3.242875e-02	ci left: 6.131113e-03	ci right 6.333636e-03	k: 14520	n:2330000
Cons ci ratio: 1.049225e-01	ci left: 5.672936e-04	ci right 6.305248e-04	k: 1394	n:2330000
KS ci ratio: 2.970419e-03	ci left: 4.271011e-01	ci right 4.283721e-01	k: 996626	n:2330000
ODAM   2330000 perm   2470 sec   (943 perm/sec)   p_kst 4.277365e-01   p_cons 5.982833e-04   p_joint 6.231760e-03

Joint ci ratio: 3.236086e-02	ci left: 6.130769e-03	ci right 6.332849e-03	k: 14581	n:2340000
Cons ci ratio: 1.047725e-01	ci left: 5.665338e-04	ci right 6.295845e-04	k: 1398	n:2340000
KS ci ratio: 2.964236e-03	ci left: 4.270741e-01	ci right 4.283423e-01	k: 1000837	n:2340000
ODAM   2340000 perm   2489 sec   (940 perm/sec)   p_kst 4.277081e-01   p_cons 5.974359e-04   p_joint 6.231197e-03

Joint ci ratio: 3.237246e-02	ci left: 6.100458e-03	ci right 6.301612e-03	k: 14571	n:2350000
Cons ci ratio: 1.045858e-01	ci left: 5.661950e-04	ci right 6.290888e-04	k: 1403	n:2350000
KS ci ratio: 2.957779e-03	ci left: 4.270992e-01	ci right 4.283648e-01	k: 1005170	n:2350000
ODAM   2350000 perm   2508 sec   (937 perm/sec)   p_kst 4.277319e-01   p_cons 5.970213e-04   p_joint 6.200426e-03

Joint ci ratio: 3.230492e-02	ci left: 6.100248e-03	ci right 6.300967e-03	k: 14632	n:2360000
Cons ci ratio: 1.043260e-01	ci left: 5.666845e-04	ci right 6.294667e-04	k: 1410	n:2360000
KS ci ratio: 2.951382e-03	ci left: 4.271212e-01	ci right 4.283841e-01	k: 1009496	n:2360000
ODAM   2360000 perm   2527 sec   (934 perm/sec)   p_kst 4.277525e-01   p_cons 5.974576e-04   p_joint 6.200000e-03

Joint ci ratio: 3.223229e-02	ci left: 6.102132e-03	ci right 6.302453e-03	k: 14698	n:2370000
Cons ci ratio: 1.041049e-01	ci left: 5.667591e-04	ci right 6.294083e-04	k: 1416	n:2370000
KS ci ratio: 2.944985e-03	ci left: 4.271497e-01	ci right 4.284099e-01	k: 1013838	n:2370000
ODAM   2370000 perm   2547 sec   (931 perm/sec)   p_kst 4.277797e-01   p_cons 5.974684e-04   p_joint 6.201688e-03

Joint ci ratio: 3.270968e-02	ci left: 5.900194e-03	ci right 6.096809e-03	k: 14275	n:2380000
Cons ci ratio: 1.039949e-01	ci left: 5.656054e-04	ci right 6.280571e-04	k: 1419	n:2380000
KS ci ratio: 2.938751e-03	ci left: 4.271579e-01	ci right 4.284154e-01	k: 1018132	n:2380000
ODAM   2380000 perm   2567 sec   (927 perm/sec)   p_kst 4.277866e-01   p_cons 5.962185e-04   p_joint 5.997899e-03

Joint ci ratio: 3.210591e-02	ci left: 6.099213e-03	ci right 6.298639e-03	k: 14814	n:2390000
Cons ci ratio: 1.038124e-01	ci left: 5.652766e-04	ci right 6.275756e-04	k: 1424	n:2390000
KS ci ratio: 2.932265e-03	ci left: 4.272145e-01	ci right 4.284694e-01	k: 1022542	n:2390000
ODAM   2390000 perm   2587 sec   (924 perm/sec)   p_kst 4.278418e-01   p_cons 5.958159e-04   p_joint 6.198326e-03

Joint ci ratio: 3.202810e-02	ci left: 6.103559e-03	ci right 6.302635e-03	k: 14886	n:2400000
Cons ci ratio: 1.035583e-01	ci left: 5.657623e-04	ci right 6.279530e-04	k: 1431	n:2400000
KS ci ratio: 2.925932e-03	ci left: 4.272523e-01	ci right 4.285046e-01	k: 1026908	n:2400000
ODAM   2400000 perm   2607 sec   (921 perm/sec)   p_kst 4.278783e-01   p_cons 5.962500e-04   p_joint 6.202500e-03

Joint ci ratio: 3.197346e-02	ci left: 6.099225e-03	ci right 6.297815e-03	k: 14937	n:2410000
Cons ci ratio: 1.032702e-01	ci left: 5.666484e-04	ci right 6.287527e-04	k: 1439	n:2410000
KS ci ratio: 2.919906e-03	ci left: 4.272449e-01	ci right 4.284947e-01	k: 1031166	n:2410000
ODAM   2410000 perm   2627 sec   (918 perm/sec)   p_kst 4.278697e-01   p_cons 5.970954e-04   p_joint 6.197925e-03

Joint ci ratio: 3.190410e-02	ci left: 6.100667e-03	ci right 6.298864e-03	k: 15002	n:2420000
Cons ci ratio: 1.029489e-01	ci left: 5.679300e-04	ci right 6.299694e-04	k: 1448	n:2420000
KS ci ratio: 2.913783e-03	ci left: 4.272604e-01	ci right 4.285075e-01	k: 1035479	n:2420000
ODAM   2420000 perm   2647 sec   (914 perm/sec)   p_kst 4.278839e-01   p_cons 5.983471e-04   p_joint 6.199174e-03

Joint ci ratio: 3.184051e-02	ci left: 6.100056e-03	ci right 6.297831e-03	k: 15062	n:2430000
Cons ci ratio: 1.027011e-01	ci left: 5.683994e-04	ci right 6.303316e-04	k: 1455	n:2430000
KS ci ratio: 2.907947e-03	ci left: 4.272338e-01	ci right 4.284783e-01	k: 1039690	n:2430000
ODAM   2430000 perm   2667 sec   (911 perm/sec)   p_kst 4.278560e-01   p_cons 5.987654e-04   p_joint 6.198354e-03

Joint ci ratio: 3.177201e-02	ci left: 6.101483e-03	ci right 6.298872e-03	k: 15127	n:2440000
Cons ci ratio: 1.023502e-01	ci left: 5.700632e-04	ci right 6.319517e-04	k: 1465	n:2440000
KS ci ratio: 2.902076e-03	ci left: 4.272192e-01	ci right 4.284613e-01	k: 1043930	n:2440000
ODAM   2440000 perm   2686 sec   (908 perm/sec)   p_kst 4.278402e-01   p_cons 6.004098e-04   p_joint 6.199590e-03

Joint ci ratio: 3.170710e-02	ci left: 6.101685e-03	ci right 6.298669e-03	k: 15189	n:2450000
Cons ci ratio: 1.021761e-01	ci left: 5.697250e-04	ci right 6.314653e-04	k: 1470	n:2450000
KS ci ratio: 2.896240e-03	ci left: 4.272048e-01	ci right 4.284443e-01	k: 1048170	n:2450000
ODAM   2450000 perm   2706 sec   (905 perm/sec)   p_kst 4.278245e-01   p_cons 6.000000e-04   p_joint 6.199592e-03

Joint ci ratio: 3.163633e-02	ci left: 6.104305e-03	ci right 6.300926e-03	k: 15257	n:2460000
Cons ci ratio: 1.019338e-01	ci left: 5.701820e-04	ci right 6.318165e-04	k: 1477	n:2460000
KS ci ratio: 2.890278e-03	ci left: 4.272178e-01	ci right 4.284547e-01	k: 1052477	n:2460000
ODAM   2460000 perm   2727 sec   (902 perm/sec)   p_kst 4.278362e-01   p_cons 6.004065e-04   p_joint 6.202033e-03

Joint ci ratio: 3.157122e-02	ci left: 6.104895e-03	ci right 6.301123e-03	k: 15320	n:2470000
Cons ci ratio: 1.016933e-01	ci left: 5.706354e-04	ci right 6.321647e-04	k: 1484	n:2470000
KS ci ratio: 2.884499e-03	ci left: 4.272059e-01	ci right 4.284404e-01	k: 1056723	n:2470000
ODAM   2470000 perm   2747 sec   (899 perm/sec)   p_kst 4.278231e-01   p_cons 6.008097e-04   p_joint 6.202429e-03

Joint ci ratio: 3.150444e-02	ci left: 6.106282e-03	ci right 6.302132e-03	k: 15385	n:2480000
Cons ci ratio: 1.015566e-01	ci left: 5.699063e-04	ci right 6.312695e-04	k: 1488	n:2480000
KS ci ratio: 2.878818e-03	ci left: 4.271833e-01	ci right 4.284152e-01	k: 1060942	n:2480000
ODAM   2480000 perm   2768 sec   (896 perm/sec)   p_kst 4.277992e-01   p_cons 6.000000e-04   p_joint 6.203629e-03

Joint ci ratio: 3.144115e-02	ci left: 6.106462e-03	ci right 6.301918e-03	k: 15447	n:2490000
Cons ci ratio: 1.013526e-01	ci left: 5.699661e-04	ci right 6.312051e-04	k: 1494	n:2490000
KS ci ratio: 2.873149e-03	ci left: 4.271645e-01	ci right 4.283939e-01	k: 1065170	n:2490000
ODAM   2490000 perm   2788 sec   (893 perm/sec)   p_kst 4.277791e-01   p_cons 6.000000e-04   p_joint 6.203614e-03

Joint ci ratio: 3.137011e-02	ci left: 6.109817e-03	ci right 6.304930e-03	k: 15517	n:2500000
Cons ci ratio: 1.010825e-01	ci left: 5.708052e-04	ci right 6.319612e-04	k: 1502	n:2500000
KS ci ratio: 2.867338e-03	ci left: 4.271758e-01	ci right 4.284028e-01	k: 1069473	n:2500000
ODAM   2500000 perm   2809 sec   (890 perm/sec)   p_kst 4.277892e-01   p_cons 6.008000e-04   p_joint 6.206800e-03

Joint ci ratio: 3.123107e-02	ci left: 6.140026e-03	ci right 6.335219e-03	k: 15655	n:2510000
Cons ci ratio: 1.009483e-01	ci left: 5.700844e-04	ci right 6.310773e-04	k: 1506	n:2510000
KS ci ratio: 2.861585e-03	ci left: 4.271830e-01	ci right 4.284076e-01	k: 1073766	n:2510000
ODAM   2510000 perm   2830 sec   (887 perm/sec)   p_kst 4.277952e-01   p_cons 6.000000e-04   p_joint 6.237052e-03

Joint ci ratio: 3.115645e-02	ci left: 6.145191e-03	ci right 6.340073e-03	k: 15730	n:2520000
Cons ci ratio: 1.006814e-01	ci left: 5.709168e-04	ci right 6.318276e-04	k: 1514	n:2520000
KS ci ratio: 2.855918e-03	ci left: 4.271815e-01	ci right 4.284036e-01	k: 1078037	n:2520000
ODAM   2520000 perm   2852 sec   (884 perm/sec)   p_kst 4.277925e-01   p_cons 6.007937e-04   p_joint 6.242063e-03

Joint ci ratio: 3.109920e-02	ci left: 6.143648e-03	ci right 6.338117e-03	k: 15788	n:2530000
Cons ci ratio: 1.005157e-01	ci left: 5.705867e-04	ci right 6.313563e-04	k: 1519	n:2530000
KS ci ratio: 2.850227e-03	ci left: 4.271898e-01	ci right 4.284095e-01	k: 1082333	n:2530000
ODAM   2530000 perm   2872 sec   (881 perm/sec)   p_kst 4.277996e-01   p_cons 6.003953e-04   p_joint 6.240316e-03

Joint ci ratio: 3.104522e-02	ci left: 6.140946e-03	ci right 6.334986e-03	k: 15843	n:2540000
Cons ci ratio: 1.004167e-01	ci left: 5.694917e-04	ci right 6.300814e-04	k: 1522	n:2540000
KS ci ratio: 2.844542e-03	ci left: 4.272029e-01	ci right 4.284201e-01	k: 1086641	n:2540000
ODAM   2540000 perm   2894 sec   (878 perm/sec)   p_kst 4.278114e-01   p_cons 5.992126e-04   p_joint 6.237402e-03

Joint ci ratio: 3.150302e-02	ci left: 5.940207e-03	ci right 6.130721e-03	k: 15389	n:2550000
Cons ci ratio: 1.001539e-01	ci left: 5.703170e-04	ci right 6.308264e-04	k: 1530	n:2550000
KS ci ratio: 2.838970e-03	ci left: 4.272020e-01	ci right 4.284169e-01	k: 1090914	n:2550000
ODAM   2550000 perm   2915 sec   (875 perm/sec)   p_kst 4.278094e-01   p_cons 6.000000e-04   p_joint 6.034902e-03

Joint ci ratio: 3.142747e-02	ci left: 5.945682e-03	ci right 6.135907e-03	k: 15463	n:2560000
Cons ci ratio: 9.992573e-02	ci left: 5.707552e-04	ci right 6.311650e-04	k: 1537	n:2560000
KS ci ratio: 2.833536e-03	ci left: 4.271833e-01	ci right 4.283958e-01	k: 1095141	n:2560000
ODAM   2560000 perm   2936 sec   (872 perm/sec)   p_kst 4.277895e-01   p_cons 6.003906e-04   p_joint 6.040234e-03

Outputting figure to mutsig2_images.part000000000119/ODAM.4_880_2560000_0.42779_0.00060039_0.0060402.png
                gene_name: ODAM
               theta_stop: 0.100 
                    nperm: 2560000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.00060 
      ci_cons_bounds_left: 0.00057 
     ci_cons_bounds_right: 0.00063 
                  p_joint: 0.0060 
     ci_joint_bounds_left: 0.0059 
    ci_joint_bounds_right: 0.0061 

Current progress: 54 percent done.
OFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
KS ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
OFD1   10000 perm   2 sec   (5193 perm/sec)   p_kst 9.569000e-01   p_cons 6.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OFD1.4_3131_10000_0.9569_0.6656_1.png
                gene_name: OFD1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
OLFML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
Cons ci ratio: 5.371559e-02	ci left: 3.380633e-01	ci right 3.568256e-01	k: 3474	n:10000
KS ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
OLFML1   10000 perm   2 sec   (6042 perm/sec)   p_kst 4.099000e-01   p_cons 3.474000e-01   p_joint 6.528000e-01

Outputting figure to mutsig2_images.part000000000119/OLFML1.4_1221_10000_0.4099_0.3474_0.6528.png
                gene_name: OLFML1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 57 percent done.
OLFML2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
OLFML2A   10000 perm   2 sec   (5891 perm/sec)   p_kst 6.671000e-01   p_cons 6.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OLFML2A.4_1991_10000_0.6671_0.694_1.png
                gene_name: OLFML2A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
OOEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
Cons ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
OOEP   10000 perm   2 sec   (6619 perm/sec)   p_kst 8.490000e-02   p_cons 8.954000e-01   p_joint 2.394000e-01

Joint ci ratio: 6.008923e-02	ci left: 1.701517e-01	ci right 1.807428e-01	k: 3508	n:20000
Cons ci ratio: 9.460004e-03	ci left: 8.913813e-01	ci right 8.999033e-01	k: 17914	n:20000
KS ci ratio: 9.050606e-02	ci left: 8.185600e-02	ci right 8.966493e-02	k: 1714	n:20000
OOEP   20000 perm   3 sec   (5867 perm/sec)   p_kst 8.570000e-02   p_cons 8.957000e-01   p_joint 1.754000e-01

Outputting figure to mutsig2_images.part000000000119/OOEP.4_462_20000_0.0857_0.8957_0.1754.png
                gene_name: OOEP
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
OPRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
Cons ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
KS ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
OPRM1   10000 perm   2 sec   (5577 perm/sec)   p_kst 1.160000e-01   p_cons 1.060000e-02   p_joint 9.990000e-02

Joint ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
Cons ci ratio: 2.515060e-01	ci left: 1.049034e-02	ci right 1.355399e-02	k: 239	n:20000
KS ci ratio: 7.531074e-02	ci left: 1.147891e-01	ci right 1.238219e-01	k: 2385	n:20000
OPRM1   20000 perm   4 sec   (5021 perm/sec)   p_kst 1.192500e-01   p_cons 1.195000e-02   p_joint 3.470000e-02

Joint ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
Cons ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
KS ci ratio: 6.136486e-02	ci left: 1.160470e-01	ci right 1.234268e-01	k: 3591	n:30000
OPRM1   30000 perm   6 sec   (4810 perm/sec)   p_kst 1.197000e-01   p_cons 9.900000e-03   p_joint 5.176667e-02

Joint ci ratio: 9.285964e-02	ci left: 4.066610e-02	ci right 4.465064e-02	k: 1705	n:40000
Cons ci ratio: 1.990767e-01	ci left: 8.643905e-03	ci right 1.057829e-02	k: 383	n:40000
KS ci ratio: 5.294504e-02	ci left: 1.173248e-01	ci right 1.237304e-01	k: 4820	n:40000
OPRM1   40000 perm   9 sec   (4662 perm/sec)   p_kst 1.205000e-01   p_cons 9.575000e-03   p_joint 4.262500e-02

Joint ci ratio: 6.870853e-02	ci left: 5.901613e-02	ci right 6.323500e-02	k: 3055	n:50000
Cons ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
KS ci ratio: 4.734329e-02	ci left: 1.177180e-01	ci right 1.234461e-01	k: 6028	n:50000
OPRM1   50000 perm   11 sec   (4550 perm/sec)   p_kst 1.205600e-01   p_cons 9.380000e-03   p_joint 6.110000e-02

Joint ci ratio: 6.183084e-02	ci left: 6.083880e-02	ci right 6.473695e-02	k: 3766	n:60000
Cons ci ratio: 1.628318e-01	ci left: 8.787262e-03	ci right 1.036072e-02	k: 573	n:60000
KS ci ratio: 4.306553e-02	ci left: 1.187142e-01	ci right 1.239558e-01	k: 7279	n:60000
OPRM1   60000 perm   13 sec   (4453 perm/sec)   p_kst 1.213167e-01   p_cons 9.550000e-03   p_joint 6.276667e-02

Joint ci ratio: 5.248783e-02	ci left: 7.185966e-02	ci right 7.574718e-02	k: 5165	n:70000
Cons ci ratio: 1.440274e-01	ci left: 9.716777e-03	ci right 1.123850e-02	k: 732	n:70000
KS ci ratio: 3.981054e-02	ci left: 1.192300e-01	ci right 1.240872e-01	k: 8515	n:70000
OPRM1   70000 perm   16 sec   (4364 perm/sec)   p_kst 1.216429e-01   p_cons 1.045714e-02   p_joint 7.378571e-02

Joint ci ratio: 5.489896e-02	ci left: 5.826535e-02	ci right 6.156666e-02	k: 4792	n:80000
Cons ci ratio: 1.361043e-01	ci left: 9.563599e-03	ci right 1.097226e-02	k: 820	n:80000
KS ci ratio: 3.731267e-02	ci left: 1.189708e-01	ci right 1.235067e-01	k: 9698	n:80000
OPRM1   80000 perm   19 sec   (4279 perm/sec)   p_kst 1.212250e-01   p_cons 1.025000e-02   p_joint 5.990000e-02

Joint ci ratio: 4.790993e-02	ci left: 6.757223e-02	ci right 7.090004e-02	k: 6230	n:90000
Cons ci ratio: 1.287171e-01	ci left: 9.543063e-03	ci right 1.086657e-02	k: 917	n:90000
KS ci ratio: 3.512633e-02	ci left: 1.194163e-01	ci right 1.236970e-01	k: 10939	n:90000
OPRM1   90000 perm   21 sec   (4204 perm/sec)   p_kst 1.215444e-01   p_cons 1.018889e-02   p_joint 6.922222e-02

Joint ci ratio: 4.162566e-02	ci left: 7.976186e-02	ci right 8.316246e-02	k: 8145	n:100000
Cons ci ratio: 1.216906e-01	ci left: 9.644665e-03	ci right 1.090398e-02	k: 1026	n:100000
KS ci ratio: 3.333245e-02	ci left: 1.194712e-01	ci right 1.235308e-01	k: 12149	n:100000
OPRM1   100000 perm   24 sec   (4135 perm/sec)   p_kst 1.214900e-01   p_cons 1.026000e-02   p_joint 8.145000e-02

Joint ci ratio: 4.499524e-02	ci left: 6.309131e-02	ci right 6.600443e-02	k: 7099	n:110000
Cons ci ratio: 1.152925e-01	ci left: 9.800046e-03	ci right 1.100779e-02	k: 1143	n:110000
KS ci ratio: 3.181106e-02	ci left: 1.193671e-01	ci right 1.232347e-01	k: 13342	n:110000
OPRM1   110000 perm   27 sec   (4072 perm/sec)   p_kst 1.212909e-01   p_cons 1.039091e-02   p_joint 6.453636e-02

Joint ci ratio: 4.339634e-02	ci left: 6.228338e-02	ci right 6.505442e-02	k: 7639	n:120000
Cons ci ratio: 1.103395e-01	ci left: 9.833699e-03	ci right 1.099014e-02	k: 1248	n:120000
KS ci ratio: 3.045678e-02	ci left: 1.194495e-01	ci right 1.231521e-01	k: 14555	n:120000
OPRM1   120000 perm   30 sec   (4012 perm/sec)   p_kst 1.212917e-01   p_cons 1.040000e-02   p_joint 6.365833e-02

Joint ci ratio: 4.434517e-02	ci left: 5.544127e-02	ci right 5.796316e-02	k: 7370	n:130000
Cons ci ratio: 1.062923e-01	ci left: 9.803194e-03	ci right 1.091112e-02	k: 1345	n:130000
KS ci ratio: 2.925772e-02	ci left: 1.195528e-01	ci right 1.231102e-01	k: 15772	n:130000
OPRM1   130000 perm   33 sec   (3950 perm/sec)   p_kst 1.213231e-01   p_cons 1.034615e-02   p_joint 5.669231e-02

Joint ci ratio: 4.268650e-02	ci left: 5.560025e-02	ci right 5.803243e-02	k: 7953	n:140000
Cons ci ratio: 1.023025e-01	ci left: 9.847328e-03	ci right 1.091595e-02	k: 1452	n:140000
KS ci ratio: 2.819563e-02	ci left: 1.196012e-01	ci right 1.230288e-01	k: 16983	n:140000
OPRM1   140000 perm   36 sec   (3890 perm/sec)   p_kst 1.213071e-01   p_cons 1.037143e-02   p_joint 5.680714e-02

Joint ci ratio: 4.393028e-02	ci left: 4.929826e-02	ci right 5.151916e-02	k: 7560	n:150000
Cons ci ratio: 9.921382e-02	ci left: 9.788703e-03	ci right 1.081702e-02	k: 1544	n:150000
KS ci ratio: 2.725333e-02	ci left: 1.195524e-01	ci right 1.228622e-01	k: 18180	n:150000
OPRM1   150000 perm   39 sec   (3833 perm/sec)   p_kst 1.212000e-01   p_cons 1.029333e-02   p_joint 5.040000e-02

Outputting figure to mutsig2_images.part000000000119/OPRM1.4_2106_150000_0.1212_0.010293_0.0504.png
                gene_name: OPRM1
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0098 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 63 percent done.
OAS1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
KS ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
OAS1   10000 perm   1 sec   (6675 perm/sec)   p_kst 9.120000e-01   p_cons 4.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OAS1.2_1424_10000_0.912_0.4596_1.png
                gene_name: OAS1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
OGG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 3.905330e-02	ci left: 4.919509e-01	ci right 5.116480e-01	k: 5018	n:10000
OGG1   10000 perm   2 sec   (6027 perm/sec)   p_kst 5.018000e-01   p_cons 9.580000e-02   p_joint 3.432000e-01

Joint ci ratio: 4.326590e-02	ci left: 2.846610e-01	ci right 2.972999e-01	k: 5819	n:20000
Cons ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
KS ci ratio: 2.758380e-02	ci left: 4.954456e-01	ci right 5.093537e-01	k: 10048	n:20000
OGG1   20000 perm   4 sec   (5351 perm/sec)   p_kst 5.024000e-01   p_cons 1.015500e-01   p_joint 2.909500e-01

Outputting figure to mutsig2_images.part000000000119/OGG1.3_1723_20000_0.5024_0.10155_0.29095.png
                gene_name: OGG1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 67 percent done.
OLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
Cons ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
KS ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
OLR1   10000 perm   2 sec   (6629 perm/sec)   p_kst 5.132000e-01   p_cons 1.774000e-01   p_joint 4.769000e-01

Outputting figure to mutsig2_images.part000000000119/OLR1.3_846_10000_0.5132_0.1774_0.4769.png
                gene_name: OLR1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 69 percent done.
ONECUT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
Cons ci ratio: 2.508807e-02	ci left: 7.003909e-01	ci right 7.182870e-01	k: 7094	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
ONECUT2   10000 perm   2 sec   (6258 perm/sec)   p_kst 1.787000e-01   p_cons 7.094000e-01   p_joint 5.416000e-01

Outputting figure to mutsig2_images.part000000000119/ONECUT2.3_1523_10000_0.1787_0.7094_0.5416.png
                gene_name: ONECUT2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 70 percent done.
OPN1LW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
OPN1LW   10000 perm   2 sec   (6335 perm/sec)   p_kst 1.400000e-01   p_cons 5.210000e-02   p_joint 1.082000e-01

Joint ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
Cons ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
KS ci ratio: 6.928976e-02	ci left: 1.331494e-01	ci right 1.427562e-01	k: 2758	n:20000
OPN1LW   20000 perm   4 sec   (5603 perm/sec)   p_kst 1.379000e-01   p_cons 5.245000e-02   p_joint 1.012500e-01

Joint ci ratio: 7.867054e-02	ci left: 7.341855e-02	ci right 7.946379e-02	k: 2292	n:30000
Cons ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
KS ci ratio: 5.669043e-02	ci left: 1.335558e-01	ci right 1.413812e-01	k: 4123	n:30000
OPN1LW   30000 perm   6 sec   (5301 perm/sec)   p_kst 1.374333e-01   p_cons 5.153333e-02   p_joint 7.640000e-02

Outputting figure to mutsig2_images.part000000000119/OPN1LW.3_1119_30000_0.13743_0.051533_0.0764.png
                gene_name: OPN1LW
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 72 percent done.
OPN1SW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.396041e-02	ci left: 2.111242e-01	ci right 2.274396e-01	k: 2192	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
OPN1SW   10000 perm   2 sec   (6433 perm/sec)   p_kst 1.582000e-01   p_cons 2.103000e-01   p_joint 2.192000e-01

Outputting figure to mutsig2_images.part000000000119/OPN1SW.3_1067_10000_0.1582_0.2103_0.2192.png
                gene_name: OPN1SW
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 74 percent done.
OASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
OASL   10000 perm   2 sec   (6341 perm/sec)   p_kst 2.079000e-01   p_cons 4.328000e-01   p_joint 3.542000e-01

Outputting figure to mutsig2_images.part000000000119/OASL.2_1569_10000_0.2079_0.4328_0.3542.png
                gene_name: OASL
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 76 percent done.
OBP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
OBP2A   10000 perm   1 sec   (7008 perm/sec)   p_kst 2.392000e-01   p_cons 4.936000e-01   p_joint 3.247000e-01

Outputting figure to mutsig2_images.part000000000119/OBP2A.2_537_10000_0.2392_0.4936_0.3247.png
                gene_name: OBP2A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 78 percent done.
OCIAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
KS ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
OCIAD1   10000 perm   1 sec   (6763 perm/sec)   p_kst 6.349000e-01   p_cons 8.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OCIAD1.2_806_10000_0.6349_0.8559_1.png
                gene_name: OCIAD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ODF3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
KS ci ratio: 3.651132e-02	ci left: 5.255657e-01	ci right 5.452137e-01	k: 5354	n:10000
ODF3L1   10000 perm   1 sec   (6800 perm/sec)   p_kst 5.354000e-01   p_cons 7.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/ODF3L1.2_841_10000_0.5354_0.7796_1.png
                gene_name: ODF3L1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
OGFOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
KS ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
OGFOD1   10000 perm   2 sec   (6580 perm/sec)   p_kst 9.333000e-01   p_cons 9.538000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OGFOD1.2_1681_10000_0.9333_0.9538_1.png
                gene_name: OGFOD1
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
OLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314008e-03	ci left: 9.911641e-01	ci right 9.945392e-01	k: 9930	n:10000
Cons ci ratio: 1.257878e-02	ci left: 9.008303e-01	ci right 9.123316e-01	k: 9067	n:10000
KS ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
OLA1   10000 perm   2 sec   (6457 perm/sec)   p_kst 6.550000e-01   p_cons 9.067000e-01   p_joint 9.930000e-01

Outputting figure to mutsig2_images.part000000000119/OLA1.2_1231_10000_0.655_0.9067_0.993.png
                gene_name: OLA1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
OLFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
Cons ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
KS ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
OLFM1   10000 perm   2 sec   (5595 perm/sec)   p_kst 5.436000e-01   p_cons 7.524000e-01   p_joint 6.503000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM1.2_1438_10000_0.5436_0.7524_0.6503.png
                gene_name: OLFM1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 87 percent done.
OLFML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
Cons ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
KS ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
OLFML3   10000 perm   2 sec   (6575 perm/sec)   p_kst 4.590000e-02   p_cons 2.951000e-01   p_joint 2.856000e-01

Joint ci ratio: 6.428929e-02	ci left: 1.516872e-01	ci right 1.618128e-01	k: 3134	n:20000
Cons ci ratio: 4.462541e-02	ci left: 2.721461e-01	ci right 2.846184e-01	k: 5567	n:20000
KS ci ratio: 1.217194e-01	ci left: 4.629176e-02	ci right 5.234013e-02	k: 985	n:20000
OLFML3   20000 perm   3 sec   (5748 perm/sec)   p_kst 4.925000e-02   p_cons 2.783500e-01   p_joint 1.567000e-01

Joint ci ratio: 5.322912e-02	ci left: 1.490094e-01	ci right 1.571912e-01	k: 4592	n:30000
Cons ci ratio: 3.657612e-02	ci left: 2.717754e-01	ci right 2.819345e-01	k: 8305	n:30000
KS ci ratio: 9.847705e-02	ci left: 4.769098e-02	ci right 5.266326e-02	k: 1504	n:30000
OLFML3   30000 perm   6 sec   (5443 perm/sec)   p_kst 5.013333e-02   p_cons 2.768333e-01   p_joint 1.530667e-01

Outputting figure to mutsig2_images.part000000000119/OLFML3.2_1233_30000_0.050133_0.27683_0.15307.png
                gene_name: OLFML3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 89 percent done.
OLIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
Cons ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
KS ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
OLIG3   10000 perm   1 sec   (6833 perm/sec)   p_kst 6.547000e-01   p_cons 3.322000e-01   p_joint 3.073000e-01

Outputting figure to mutsig2_images.part000000000119/OLIG3.2_823_10000_0.6547_0.3322_0.3073.png
                gene_name: OLIG3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 91 percent done.
OMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
OMA1   10000 perm   1 sec   (6750 perm/sec)   p_kst 2.082000e-01   p_cons 8.600000e-03   p_joint 2.050000e-02

Joint ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
Cons ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
KS ci ratio: 5.469398e-02	ci left: 1.987305e-01	ci right 2.099556e-01	k: 4086	n:20000
OMA1   20000 perm   3 sec   (6004 perm/sec)   p_kst 2.043000e-01   p_cons 7.850000e-03   p_joint 9.150000e-03

Joint ci ratio: 2.921143e-01	ci left: 5.095739e-03	ci right 6.868654e-03	k: 178	n:30000
Cons ci ratio: 3.391472e-01	ci left: 3.682707e-03	ci right 5.215703e-03	k: 132	n:30000
KS ci ratio: 4.507148e-02	ci left: 1.968081e-01	ci right 2.059164e-01	k: 6040	n:30000
OMA1   30000 perm   5 sec   (5722 perm/sec)   p_kst 2.013333e-01   p_cons 4.400000e-03   p_joint 5.933333e-03

Joint ci ratio: 3.895570e-01	ci left: 2.034549e-03	ci right 3.039847e-03	k: 100	n:40000
Cons ci ratio: 2.891075e-01	ci left: 3.914153e-03	ci right 5.259327e-03	k: 182	n:40000
KS ci ratio: 3.886603e-02	ci left: 1.987944e-01	ci right 2.066988e-01	k: 8109	n:40000
OMA1   40000 perm   7 sec   (5520 perm/sec)   p_kst 2.027250e-01   p_cons 4.550000e-03   p_joint 2.500000e-03

Joint ci ratio: 3.217416e-01	ci left: 2.484493e-03	ci right 3.454640e-03	k: 147	n:50000
Cons ci ratio: 2.584444e-01	ci left: 3.988372e-03	ci right 5.190261e-03	k: 228	n:50000
KS ci ratio: 3.467388e-02	ci left: 2.000380e-01	ci right 2.071164e-01	k: 10178	n:50000
OMA1   50000 perm   9 sec   (5353 perm/sec)   p_kst 2.035600e-01   p_cons 4.560000e-03   p_joint 2.940000e-03

Joint ci ratio: 2.345587e-01	ci left: 4.089995e-03	ci right 5.192096e-03	k: 277	n:60000
Cons ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
KS ci ratio: 3.155035e-02	ci left: 2.013947e-01	ci right 2.078672e-01	k: 12277	n:60000
OMA1   60000 perm   12 sec   (5213 perm/sec)   p_kst 2.046167e-01   p_cons 4.733333e-03   p_joint 4.616667e-03

Joint ci ratio: 2.281368e-01	ci left: 3.720952e-03	ci right 4.692283e-03	k: 293	n:70000
Cons ci ratio: 2.102175e-01	ci left: 4.423254e-03	ci right 5.475570e-03	k: 345	n:70000
KS ci ratio: 2.920270e-02	ci left: 2.017162e-01	ci right 2.077083e-01	k: 14329	n:70000
OMA1   70000 perm   14 sec   (5089 perm/sec)   p_kst 2.047000e-01   p_cons 4.928571e-03   p_joint 4.185714e-03

Joint ci ratio: 1.962492e-01	ci left: 4.475448e-03	ci right 5.460979e-03	k: 396	n:80000
Cons ci ratio: 1.964980e-01	ci left: 4.463560e-03	ci right 5.447868e-03	k: 395	n:80000
KS ci ratio: 2.730316e-02	ci left: 2.020702e-01	ci right 2.076762e-01	k: 16389	n:80000
OMA1   80000 perm   16 sec   (4974 perm/sec)   p_kst 2.048625e-01   p_cons 4.937500e-03   p_joint 4.950000e-03

Joint ci ratio: 1.837126e-01	ci left: 4.570851e-03	ci right 5.505934e-03	k: 452	n:90000
Cons ci ratio: 1.835091e-01	ci left: 4.581453e-03	ci right 5.517552e-03	k: 453	n:90000
KS ci ratio: 2.574146e-02	ci left: 2.022338e-01	ci right 2.075185e-01	k: 18438	n:90000
OMA1   90000 perm   18 sec   (4867 perm/sec)   p_kst 2.048667e-01   p_cons 5.033333e-03   p_joint 5.022222e-03

Joint ci ratio: 1.726269e-01	ci left: 4.687052e-03	ci right 5.582022e-03	k: 512	n:100000
Cons ci ratio: 1.722896e-01	ci left: 4.706192e-03	ci right 5.602879e-03	k: 514	n:100000
KS ci ratio: 2.436575e-02	ci left: 2.030987e-01	ci right 2.081184e-01	k: 20560	n:100000
OMA1   100000 perm   21 sec   (4770 perm/sec)   p_kst 2.056000e-01   p_cons 5.140000e-03   p_joint 5.120000e-03

Joint ci ratio: 1.721624e-01	ci left: 4.286974e-03	ci right 5.103114e-03	k: 515	n:110000
Cons ci ratio: 1.627624e-01	ci left: 4.818398e-03	ci right 5.680731e-03	k: 576	n:110000
KS ci ratio: 2.322544e-02	ci left: 2.033055e-01	ci right 2.080919e-01	k: 22626	n:110000
OMA1   110000 perm   24 sec   (4676 perm/sec)   p_kst 2.056909e-01   p_cons 5.236364e-03   p_joint 4.681818e-03

Joint ci ratio: 1.558898e-01	ci left: 4.832929e-03	ci right 5.657926e-03	k: 628	n:120000
Cons ci ratio: 1.555174e-01	ci left: 4.856959e-03	ci right 5.683893e-03	k: 631	n:120000
KS ci ratio: 2.223383e-02	ci left: 2.034492e-01	ci right 2.080317e-01	k: 24688	n:120000
OMA1   120000 perm   26 sec   (4590 perm/sec)   p_kst 2.057333e-01   p_cons 5.258333e-03   p_joint 5.233333e-03

Joint ci ratio: 1.579530e-01	ci left: 4.342833e-03	ci right 5.094906e-03	k: 612	n:130000
Cons ci ratio: 1.497097e-01	ci left: 4.853277e-03	ci right 5.645962e-03	k: 681	n:130000
KS ci ratio: 2.135877e-02	ci left: 2.035821e-01	ci right 2.079849e-01	k: 26751	n:130000
OMA1   130000 perm   29 sec   (4509 perm/sec)   p_kst 2.057769e-01   p_cons 5.238462e-03   p_joint 4.707692e-03

Joint ci ratio: 1.524574e-01	ci left: 4.341578e-03	ci right 5.064886e-03	k: 657	n:140000
Cons ci ratio: 1.438179e-01	ci left: 4.898818e-03	ci right 5.664749e-03	k: 738	n:140000
KS ci ratio: 2.057726e-02	ci left: 2.037346e-01	ci right 2.079776e-01	k: 28819	n:140000
OMA1   140000 perm   32 sec   (4427 perm/sec)   p_kst 2.058500e-01   p_cons 5.271429e-03   p_joint 4.692857e-03

Joint ci ratio: 1.472879e-01	ci left: 4.353726e-03	ci right 5.052298e-03	k: 704	n:150000
Cons ci ratio: 1.391877e-01	ci left: 4.893763e-03	ci right 5.632226e-03	k: 788	n:150000
KS ci ratio: 1.990289e-02	ci left: 2.034243e-01	ci right 2.075204e-01	k: 30820	n:150000
OMA1   150000 perm   34 sec   (4349 perm/sec)   p_kst 2.054667e-01   p_cons 5.253333e-03   p_joint 4.693333e-03

Joint ci ratio: 1.424208e-01	ci left: 4.376774e-03	ci right 5.053866e-03	k: 753	n:160000
Cons ci ratio: 1.348969e-01	ci left: 4.895725e-03	ci right 5.609883e-03	k: 839	n:160000
KS ci ratio: 1.928741e-02	ci left: 2.032110e-01	ci right 2.071747e-01	k: 32830	n:160000
OMA1   160000 perm   37 sec   (4277 perm/sec)   p_kst 2.051875e-01   p_cons 5.243750e-03   p_joint 4.706250e-03

Joint ci ratio: 1.369817e-01	ci left: 4.465615e-03	ci right 5.127917e-03	k: 814	n:170000
Cons ci ratio: 1.306854e-01	ci left: 4.920528e-03	ci right 5.614155e-03	k: 894	n:170000
KS ci ratio: 1.871996e-02	ci left: 2.031241e-01	ci right 2.069683e-01	k: 34857	n:170000
OMA1   170000 perm   40 sec   (4206 perm/sec)   p_kst 2.050412e-01   p_cons 5.258824e-03   p_joint 4.788235e-03

Joint ci ratio: 1.337420e-01	ci left: 4.432217e-03	ci right 5.072782e-03	k: 854	n:180000
Cons ci ratio: 1.277953e-01	ci left: 4.867570e-03	ci right 5.537407e-03	k: 935	n:180000
KS ci ratio: 1.821565e-02	ci left: 2.027661e-01	ci right 2.064990e-01	k: 36833	n:180000
OMA1   180000 perm   44 sec   (4137 perm/sec)   p_kst 2.046278e-01   p_cons 5.194444e-03   p_joint 4.744444e-03

Joint ci ratio: 1.731768e-01	ci left: 2.456550e-03	ci right 2.927249e-03	k: 510	n:190000
Cons ci ratio: 1.252822e-01	ci left: 4.805042e-03	ci right 5.452304e-03	k: 973	n:190000
KS ci ratio: 1.771473e-02	ci left: 2.030922e-01	ci right 2.067273e-01	k: 38932	n:190000
OMA1   190000 perm   47 sec   (4071 perm/sec)   p_kst 2.049053e-01   p_cons 5.121053e-03   p_joint 2.684211e-03

Joint ci ratio: 1.268789e-01	ci left: 4.448522e-03	ci right 5.055969e-03	k: 949	n:200000
Cons ci ratio: 1.221258e-01	ci left: 4.811900e-03	ci right 5.442575e-03	k: 1024	n:200000
KS ci ratio: 1.726621e-02	ci left: 2.031378e-01	ci right 2.066807e-01	k: 40981	n:200000
OMA1   200000 perm   50 sec   (4005 perm/sec)   p_kst 2.049050e-01   p_cons 5.120000e-03   p_joint 4.745000e-03

Joint ci ratio: 1.241655e-01	ci left: 4.430405e-03	ci right 5.021489e-03	k: 991	n:210000
Cons ci ratio: 1.193080e-01	ci left: 4.809049e-03	ci right 5.423781e-03	k: 1073	n:210000
KS ci ratio: 1.684323e-02	ci left: 2.033130e-01	ci right 2.067713e-01	k: 43058	n:210000
OMA1   210000 perm   53 sec   (3941 perm/sec)   p_kst 2.050381e-01   p_cons 5.109524e-03   p_joint 4.719048e-03

Joint ci ratio: 1.217375e-01	ci left: 4.405246e-03	ci right 4.980651e-03	k: 1031	n:220000
Cons ci ratio: 1.157989e-01	ci left: 4.881646e-03	ci right 5.486050e-03	k: 1139	n:220000
KS ci ratio: 1.645906e-02	ci left: 2.032920e-01	ci right 2.066703e-01	k: 45095	n:220000
OMA1   220000 perm   57 sec   (3879 perm/sec)   p_kst 2.049773e-01   p_cons 5.177273e-03   p_joint 4.686364e-03

Joint ci ratio: 1.195025e-01	ci left: 4.378159e-03	ci right 4.938785e-03	k: 1070	n:230000
Cons ci ratio: 1.128176e-01	ci left: 4.927042e-03	ci right 5.520315e-03	k: 1200	n:230000
KS ci ratio: 1.610519e-02	ci left: 2.031696e-01	ci right 2.064726e-01	k: 47108	n:230000
OMA1   230000 perm   60 sec   (3820 perm/sec)   p_kst 2.048174e-01   p_cons 5.217391e-03   p_joint 4.652174e-03

Joint ci ratio: 1.208822e-01	ci left: 4.098706e-03	ci right 4.630040e-03	k: 1046	n:240000
Cons ci ratio: 1.102310e-01	ci left: 4.952627e-03	ci right 5.534420e-03	k: 1257	n:240000
KS ci ratio: 1.576594e-02	ci left: 2.032077e-01	ci right 2.064411e-01	k: 49157	n:240000
OMA1   240000 perm   64 sec   (3763 perm/sec)   p_kst 2.048208e-01   p_cons 5.237500e-03   p_joint 4.358333e-03

Joint ci ratio: 1.586525e-01	ci left: 2.242712e-03	ci right 2.632967e-03	k: 608	n:250000
Cons ci ratio: 1.077322e-01	ci left: 4.984093e-03	ci right 5.555469e-03	k: 1316	n:250000
KS ci ratio: 1.543873e-02	ci left: 2.034229e-01	ci right 2.065919e-01	k: 51251	n:250000
OMA1   250000 perm   67 sec   (3707 perm/sec)   p_kst 2.050040e-01   p_cons 5.264000e-03   p_joint 2.432000e-03

Joint ci ratio: 1.563605e-01	ci left: 2.222954e-03	ci right 2.603658e-03	k: 626	n:260000
Cons ci ratio: 1.058220e-01	ci left: 4.972081e-03	ci right 5.531343e-03	k: 1364	n:260000
KS ci ratio: 1.514180e-02	ci left: 2.033921e-01	ci right 2.064991e-01	k: 53285	n:260000
OMA1   260000 perm   71 sec   (3654 perm/sec)   p_kst 2.049423e-01   p_cons 5.246154e-03   p_joint 2.407692e-03

Joint ci ratio: 1.533333e-01	ci left: 2.229628e-03	ci right 2.603403e-03	k: 651	n:270000
Cons ci ratio: 1.037152e-01	ci left: 4.989904e-03	ci right 5.539316e-03	k: 1420	n:270000
KS ci ratio: 1.486102e-02	ci left: 2.033715e-01	ci right 2.064201e-01	k: 55321	n:270000
OMA1   270000 perm   75 sec   (3601 perm/sec)   p_kst 2.048926e-01   p_cons 5.259259e-03   p_joint 2.411111e-03

Joint ci ratio: 1.510354e-01	ci left: 2.218706e-03	ci right 2.584572e-03	k: 671	n:280000
Cons ci ratio: 1.017294e-01	ci left: 5.006557e-03	ci right 5.546618e-03	k: 1476	n:280000
KS ci ratio: 1.460908e-02	ci left: 2.030465e-01	ci right 2.060382e-01	k: 57271	n:280000
OMA1   280000 perm   79 sec   (3550 perm/sec)   p_kst 2.045393e-01   p_cons 5.271429e-03   p_joint 2.396429e-03

Joint ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
Cons ci ratio: 1.004481e-01	ci left: 4.961633e-03	ci right 5.489708e-03	k: 1514	n:290000
KS ci ratio: 1.436054e-02	ci left: 2.029473e-01	ci right 2.058862e-01	k: 59280	n:290000
OMA1   290000 perm   83 sec   (3501 perm/sec)   p_kst 2.044138e-01   p_cons 5.220690e-03   p_joint 2.368966e-03

Joint ci ratio: 1.455095e-01	ci left: 2.237698e-03	ci right 2.592023e-03	k: 723	n:300000
Cons ci ratio: 9.848350e-02	ci left: 4.994525e-03	ci right 5.515103e-03	k: 1575	n:300000
KS ci ratio: 1.411153e-02	ci left: 2.031477e-01	ci right 2.060380e-01	k: 61377	n:300000
OMA1   300000 perm   87 sec   (3453 perm/sec)   p_kst 2.045900e-01   p_cons 5.250000e-03   p_joint 2.410000e-03

Joint ci ratio: 1.428692e-01	ci left: 2.249470e-03	ci right 2.598645e-03	k: 750	n:310000
Cons ci ratio: 9.636391e-02	ci left: 5.053723e-03	ci right 5.568495e-03	k: 1645	n:310000
KS ci ratio: 1.387861e-02	ci left: 2.032519e-01	ci right 2.060956e-01	k: 63448	n:310000
OMA1   310000 perm   91 sec   (3407 perm/sec)   p_kst 2.046710e-01   p_cons 5.306452e-03   p_joint 2.419355e-03

Joint ci ratio: 1.400971e-01	ci left: 2.269607e-03	ci right 2.614502e-03	k: 780	n:320000
Cons ci ratio: 9.501781e-02	ci left: 5.039152e-03	ci right 5.544870e-03	k: 1692	n:320000
KS ci ratio: 1.364978e-02	ci left: 2.035182e-01	ci right 2.063184e-01	k: 65573	n:320000
OMA1   320000 perm   95 sec   (3367 perm/sec)   p_kst 2.049156e-01   p_cons 5.287500e-03   p_joint 2.437500e-03

Joint ci ratio: 1.381652e-01	ci left: 2.265177e-03	ci right 2.604261e-03	k: 802	n:330000
Cons ci ratio: 9.356455e-02	ci left: 5.043270e-03	ci right 5.541236e-03	k: 1745	n:330000
KS ci ratio: 1.343877e-02	ci left: 2.036025e-01	ci right 2.063602e-01	k: 67643	n:330000
OMA1   330000 perm   99 sec   (3328 perm/sec)   p_kst 2.049788e-01   p_cons 5.287879e-03   p_joint 2.430303e-03

Joint ci ratio: 1.358988e-01	ci left: 2.275244e-03	ci right 2.609797e-03	k: 829	n:340000
Cons ci ratio: 9.197064e-02	ci left: 5.070191e-03	ci right 5.561828e-03	k: 1806	n:340000
KS ci ratio: 1.324299e-02	ci left: 2.035414e-01	ci right 2.062578e-01	k: 69665	n:340000
OMA1   340000 perm   103 sec   (3291 perm/sec)   p_kst 2.048971e-01   p_cons 5.311765e-03   p_joint 2.438235e-03

Joint ci ratio: 1.335064e-01	ci left: 2.293065e-03	ci right 2.623830e-03	k: 859	n:350000
Cons ci ratio: 9.045550e-02	ci left: 5.095641e-03	ci right 5.581175e-03	k: 1867	n:350000
KS ci ratio: 1.304901e-02	ci left: 2.036465e-01	ci right 2.063241e-01	k: 71744	n:350000
OMA1   350000 perm   108 sec   (3245 perm/sec)   p_kst 2.049829e-01   p_cons 5.334286e-03   p_joint 2.454286e-03

Joint ci ratio: 1.322075e-01	ci left: 2.275020e-03	ci right 2.599739e-03	k: 876	n:360000
Cons ci ratio: 8.950398e-02	ci left: 5.062703e-03	ci right 5.539758e-03	k: 1907	n:360000
KS ci ratio: 1.286703e-02	ci left: 2.036518e-01	ci right 2.062919e-01	k: 73789	n:360000
OMA1   360000 perm   112 sec   (3207 perm/sec)   p_kst 2.049694e-01   p_cons 5.297222e-03   p_joint 2.433333e-03

Joint ci ratio: 1.302177e-01	ci left: 2.284111e-03	ci right 2.604842e-03	k: 903	n:370000
Cons ci ratio: 8.821837e-02	ci left: 5.073862e-03	ci right 5.544747e-03	k: 1963	n:370000
KS ci ratio: 1.268446e-02	ci left: 2.038620e-01	ci right 2.064670e-01	k: 75910	n:370000
OMA1   370000 perm   117 sec   (3171 perm/sec)   p_kst 2.051622e-01   p_cons 5.305405e-03   p_joint 2.440541e-03

Joint ci ratio: 1.287317e-01	ci left: 2.277475e-03	ci right 2.593346e-03	k: 924	n:380000
Cons ci ratio: 8.692175e-02	ci left: 5.092204e-03	ci right 5.557493e-03	k: 2022	n:380000
KS ci ratio: 1.252662e-02	ci left: 2.036150e-01	ci right 2.061843e-01	k: 77861	n:380000
OMA1   380000 perm   121 sec   (3135 perm/sec)   p_kst 2.048974e-01   p_cons 5.321053e-03   p_joint 2.431579e-03

Joint ci ratio: 1.271607e-01	ci left: 2.276165e-03	ci right 2.587711e-03	k: 947	n:390000
Cons ci ratio: 8.576353e-02	ci left: 5.099616e-03	ci right 5.559063e-03	k: 2077	n:390000
KS ci ratio: 1.236712e-02	ci left: 2.035753e-01	ci right 2.061111e-01	k: 79888	n:390000
OMA1   390000 perm   126 sec   (3100 perm/sec)   p_kst 2.048410e-01   p_cons 5.325641e-03   p_joint 2.428205e-03

Joint ci ratio: 1.253872e-01	ci left: 2.284630e-03	ci right 2.592649e-03	k: 974	n:400000
Cons ci ratio: 8.455084e-02	ci left: 5.118934e-03	ci right 5.573277e-03	k: 2137	n:400000
KS ci ratio: 1.221197e-02	ci left: 2.035802e-01	ci right 2.060841e-01	k: 81932	n:400000
OMA1   400000 perm   131 sec   (3065 perm/sec)   p_kst 2.048300e-01   p_cons 5.342500e-03   p_joint 2.435000e-03

Joint ci ratio: 1.208764e-01	ci left: 2.403846e-03	ci right 2.715446e-03	k: 1048	n:410000
Cons ci ratio: 8.346456e-02	ci left: 5.127798e-03	ci right 5.576797e-03	k: 2193	n:410000
KS ci ratio: 1.207146e-02	ci left: 2.033442e-01	ci right 2.058161e-01	k: 83877	n:410000
OMA1   410000 perm   135 sec   (3032 perm/sec)   p_kst 2.045780e-01   p_cons 5.348780e-03   p_joint 2.556098e-03

Joint ci ratio: 1.168714e-01	ci left: 2.515262e-03	ci right 2.829757e-03	k: 1121	n:420000
Cons ci ratio: 8.254830e-02	ci left: 5.119952e-03	ci right 5.563105e-03	k: 2242	n:420000
KS ci ratio: 1.192644e-02	ci left: 2.033713e-01	ci right 2.058137e-01	k: 85928	n:420000
OMA1   420000 perm   140 sec   (2999 perm/sec)   p_kst 2.045905e-01   p_cons 5.338095e-03   p_joint 2.669048e-03

Joint ci ratio: 1.186919e-01	ci left: 2.380018e-03	ci right 2.682562e-03	k: 1087	n:430000
Cons ci ratio: 8.166157e-02	ci left: 5.112496e-03	ci right 5.550024e-03	k: 2291	n:430000
KS ci ratio: 1.178795e-02	ci left: 2.033579e-01	ci right 2.057716e-01	k: 87962	n:430000
OMA1   430000 perm   145 sec   (2967 perm/sec)   p_kst 2.045628e-01   p_cons 5.327907e-03   p_joint 2.527907e-03

Joint ci ratio: 1.175633e-01	ci left: 2.372243e-03	ci right 2.670732e-03	k: 1108	n:440000
Cons ci ratio: 8.080281e-02	ci left: 5.105404e-03	ci right 5.537513e-03	k: 2340	n:440000
KS ci ratio: 1.164579e-02	ci left: 2.035789e-01	ci right 2.059659e-01	k: 90099	n:440000
OMA1   440000 perm   150 sec   (2935 perm/sec)   p_kst 2.047705e-01   p_cons 5.318182e-03   p_joint 2.518182e-03

Joint ci ratio: 1.136764e-01	ci left: 2.485698e-03	ci right 2.787429e-03	k: 1185	n:450000
Cons ci ratio: 8.005481e-02	ci left: 5.087760e-03	ci right 5.514204e-03	k: 2384	n:450000
KS ci ratio: 1.151950e-02	ci left: 2.034842e-01	ci right 2.058440e-01	k: 92098	n:450000
OMA1   450000 perm   155 sec   (2904 perm/sec)   p_kst 2.046622e-01   p_cons 5.297778e-03   p_joint 2.633333e-03

Joint ci ratio: 1.152991e-01	ci left: 2.361968e-03	ci right 2.653051e-03	k: 1152	n:460000
Cons ci ratio: 7.916355e-02	ci left: 5.092211e-03	ci right 5.514057e-03	k: 2438	n:460000
KS ci ratio: 1.139639e-02	ci left: 2.034176e-01	ci right 2.057513e-01	k: 94108	n:460000
OMA1   460000 perm   160 sec   (2874 perm/sec)   p_kst 2.045826e-01   p_cons 5.300000e-03   p_joint 2.504348e-03

Joint ci ratio: 1.142638e-01	ci left: 2.355110e-03	ci right 2.642567e-03	k: 1173	n:470000
Cons ci ratio: 7.830141e-02	ci left: 5.096498e-03	ci right 5.513892e-03	k: 2492	n:470000
KS ci ratio: 1.127574e-02	ci left: 2.033944e-01	ci right 2.057029e-01	k: 96137	n:470000
OMA1   470000 perm   165 sec   (2845 perm/sec)   p_kst 2.045468e-01   p_cons 5.302128e-03   p_joint 2.495745e-03

Joint ci ratio: 1.162181e-01	ci left: 2.227129e-03	ci right 2.503932e-03	k: 1134	n:480000
Cons ci ratio: 7.765095e-02	ci left: 5.076112e-03	ci right 5.488227e-03	k: 2534	n:480000
KS ci ratio: 1.116135e-02	ci left: 2.032994e-01	ci right 2.055833e-01	k: 98131	n:480000
OMA1   480000 perm   170 sec   (2816 perm/sec)   p_kst 2.044396e-01   p_cons 5.279167e-03   p_joint 2.362500e-03

Joint ci ratio: 1.180596e-01	ci left: 2.112334e-03	ci right 2.379320e-03	k: 1099	n:490000
Cons ci ratio: 7.701643e-02	ci left: 5.056573e-03	ci right 5.463596e-03	k: 2576	n:490000
KS ci ratio: 1.104378e-02	ci left: 2.034020e-01	ci right 2.056628e-01	k: 100220	n:490000
OMA1   490000 perm   176 sec   (2787 perm/sec)   p_kst 2.045306e-01   p_cons 5.257143e-03   p_joint 2.242857e-03

Joint ci ratio: 1.170534e-01	ci left: 2.106970e-03	ci right 2.370851e-03	k: 1118	n:500000
Cons ci ratio: 7.626559e-02	ci left: 5.055487e-03	ci right 5.458279e-03	k: 2627	n:500000
KS ci ratio: 1.092985e-02	ci left: 2.035005e-01	ci right 2.057389e-01	k: 102309	n:500000
OMA1   500000 perm   181 sec   (2759 perm/sec)   p_kst 2.046180e-01   p_cons 5.254000e-03   p_joint 2.236000e-03

Joint ci ratio: 1.155647e-01	ci left: 2.120866e-03	ci right 2.382879e-03	k: 1147	n:510000
Cons ci ratio: 7.539496e-02	ci left: 5.073701e-03	ci right 5.473128e-03	k: 2688	n:510000
KS ci ratio: 1.082178e-02	ci left: 2.035229e-01	ci right 2.057393e-01	k: 104361	n:510000
OMA1   510000 perm   187 sec   (2731 perm/sec)   p_kst 2.046294e-01   p_cons 5.270588e-03   p_joint 2.249020e-03

Joint ci ratio: 1.142288e-01	ci left: 2.130512e-03	ci right 2.390468e-03	k: 1174	n:520000
Cons ci ratio: 7.470382e-02	ci left: 5.070479e-03	ci right 5.465834e-03	k: 2738	n:520000
KS ci ratio: 1.071598e-02	ci left: 2.035714e-01	ci right 2.057665e-01	k: 106427	n:520000
OMA1   520000 perm   192 sec   (2704 perm/sec)   p_kst 2.046673e-01   p_cons 5.265385e-03   p_joint 2.257692e-03

Joint ci ratio: 1.132217e-01	ci left: 2.128809e-03	ci right 2.386115e-03	k: 1195	n:530000
Cons ci ratio: 7.397804e-02	ci left: 5.074802e-03	ci right 5.466485e-03	k: 2792	n:530000
KS ci ratio: 1.061063e-02	ci left: 2.036973e-01	ci right 2.058720e-01	k: 108535	n:530000
OMA1   530000 perm   198 sec   (2678 perm/sec)   p_kst 2.047830e-01   p_cons 5.267925e-03   p_joint 2.254717e-03

Joint ci ratio: 1.039992e-01	ci left: 2.487570e-03	ci right 2.762254e-03	k: 1416	n:540000
Cons ci ratio: 7.332482e-02	ci left: 5.071712e-03	ci right 5.459551e-03	k: 2842	n:540000
KS ci ratio: 1.051449e-02	ci left: 2.036282e-01	ci right 2.057824e-01	k: 110540	n:540000
OMA1   540000 perm   204 sec   (2652 perm/sec)   p_kst 2.047037e-01   p_cons 5.262963e-03   p_joint 2.622222e-03

Joint ci ratio: 1.085089e-01	ci left: 2.238789e-03	ci right 2.497406e-03	k: 1301	n:550000
Cons ci ratio: 7.262553e-02	ci left: 5.077674e-03	ci right 5.462111e-03	k: 2897	n:550000
KS ci ratio: 1.041597e-02	ci left: 2.037160e-01	ci right 2.058508e-01	k: 112630	n:550000
OMA1   550000 perm   209 sec   (2628 perm/sec)   p_kst 2.047818e-01   p_cons 5.267273e-03   p_joint 2.365455e-03

Joint ci ratio: 1.076854e-01	ci left: 2.233559e-03	ci right 2.489490e-03	k: 1321	n:560000
Cons ci ratio: 7.203175e-02	ci left: 5.071165e-03	ci right 5.451838e-03	k: 2945	n:560000
KS ci ratio: 1.032271e-02	ci left: 2.037205e-01	ci right 2.058361e-01	k: 114675	n:560000
OMA1   560000 perm   215 sec   (2603 perm/sec)   p_kst 2.047768e-01   p_cons 5.258929e-03   p_joint 2.358929e-03

Joint ci ratio: 1.067210e-01	ci left: 2.235351e-03	ci right 2.489048e-03	k: 1345	n:570000
Cons ci ratio: 7.151235e-02	ci left: 5.056280e-03	ci right 5.432986e-03	k: 2988	n:570000
KS ci ratio: 1.023186e-02	ci left: 2.037267e-01	ci right 2.058237e-01	k: 116721	n:570000
OMA1   570000 perm   221 sec   (2579 perm/sec)   p_kst 2.047737e-01   p_cons 5.242105e-03   p_joint 2.359649e-03

Joint ci ratio: 1.058595e-01	ci left: 2.233733e-03	ci right 2.485073e-03	k: 1367	n:580000
Cons ci ratio: 7.092177e-02	ci left: 5.053775e-03	ci right 5.427056e-03	k: 3038	n:580000
KS ci ratio: 1.014460e-02	ci left: 2.036932e-01	ci right 2.057718e-01	k: 118744	n:580000
OMA1   580000 perm   227 sec   (2552 perm/sec)   p_kst 2.047310e-01   p_cons 5.237931e-03   p_joint 2.356897e-03

Joint ci ratio: 1.047545e-01	ci left: 2.243731e-03	ci right 2.493399e-03	k: 1396	n:590000
Cons ci ratio: 7.028843e-02	ci left: 5.059692e-03	ci right 5.429937e-03	k: 3093	n:590000
KS ci ratio: 1.005587e-02	ci left: 2.037793e-01	ci right 2.058405e-01	k: 120837	n:590000
OMA1   590000 perm   233 sec   (2527 perm/sec)   p_kst 2.048085e-01   p_cons 5.242373e-03   p_joint 2.366102e-03

Joint ci ratio: 1.040497e-01	ci left: 2.237175e-03	ci right 2.484336e-03	k: 1415	n:600000
Cons ci ratio: 6.982796e-02	ci left: 5.042499e-03	ci right 5.408970e-03	k: 3134	n:600000
KS ci ratio: 9.969273e-03	ci left: 2.038676e-01	ci right 2.059119e-01	k: 122933	n:600000
OMA1   600000 perm   240 sec   (2504 perm/sec)   p_kst 2.048883e-01   p_cons 5.223333e-03   p_joint 2.358333e-03

Joint ci ratio: 1.028929e-01	ci left: 2.251602e-03	ci right 2.497424e-03	k: 1447	n:610000
Cons ci ratio: 6.917964e-02	ci left: 5.054876e-03	ci right 5.418699e-03	k: 3193	n:610000
KS ci ratio: 9.887265e-03	ci left: 2.038746e-01	ci right 2.059020e-01	k: 124981	n:610000
OMA1   610000 perm   246 sec   (2482 perm/sec)   p_kst 2.048869e-01   p_cons 5.234426e-03   p_joint 2.372131e-03

Joint ci ratio: 9.937923e-02	ci left: 2.378794e-03	ci right 2.629117e-03	k: 1551	n:620000
Cons ci ratio: 6.846446e-02	ci left: 5.079553e-03	ci right 5.441223e-03	k: 3260	n:620000
KS ci ratio: 9.807636e-03	ci left: 2.038685e-01	ci right 2.058794e-01	k: 127021	n:620000
OMA1   620000 perm   252 sec   (2460 perm/sec)   p_kst 2.048726e-01   p_cons 5.258065e-03   p_joint 2.501613e-03

Outputting figure to mutsig2_images.part000000000119/OMA1.2_1607_620000_0.20487_0.0052581_0.0025016.png
                gene_name: OMA1
               theta_stop: 0.099 
                    nperm: 620000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.0053 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0024 
    ci_joint_bounds_right: 0.0026 

Current progress: 93 percent done.
OMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
KS ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
OMD   10000 perm   2 sec   (6529 perm/sec)   p_kst 4.131000e-01   p_cons 2.512000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000119/OMD.2_1274_10000_0.4131_0.2512_0.4773.png
                gene_name: OMD
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 94 percent done.
OPALIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
Cons ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
KS ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
OPALIN   10000 perm   1 sec   (7178 perm/sec)   p_kst 9.166000e-01   p_cons 4.768000e-01   p_joint 9.795000e-01

Outputting figure to mutsig2_images.part000000000119/OPALIN.2_463_10000_0.9166_0.4768_0.9795.png
                gene_name: OPALIN
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 96 percent done.
OPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
Cons ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
KS ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
OPN3   10000 perm   1 sec   (6788 perm/sec)   p_kst 8.051000e-01   p_cons 4.865000e-01   p_joint 9.660000e-01

Outputting figure to mutsig2_images.part000000000119/OPN3.2_1225_10000_0.8051_0.4865_0.966.png
                gene_name: OPN3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 98 percent done.
OPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.284314e-02	ci left: 5.777771e-01	ci right 5.971719e-01	k: 5875	n:10000
Cons ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
KS ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
OPN4   10000 perm   2 sec   (6546 perm/sec)   p_kst 1.462000e-01   p_cons 5.081000e-01   p_joint 5.875000e-01

Outputting figure to mutsig2_images.part000000000119/OPN4.2_1514_10000_0.1462_0.5081_0.5875.png
                gene_name: OPN4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000119
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 119 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422255: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000120> was used as the working directory.
Started at Wed Oct 24 18:01:26 2012
Results reported at Wed Oct 24 18:24:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000120.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000120.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 120  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000120.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1402.37 sec.
    Max Memory :      5285 MB
    Max Swap   :      7683 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
120
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 120
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 120: processing genes 10767 - 10856
Calculating significance of each gene.
Using projection method.
10767	OPTN	1
10768	OR10A2	2.708057e-04
10769	OR10A3	2.754239e-01
10770	OR10A4	1.990304e-01
10771	OR10A5	2.173247e-03
10772	OR10A6	6.370030e-01
10773	OR10A7	8.865934e-02
10774	OR10AD1	1
10775	OR10AG1	1.675982e-03
10776	OR10C1	5.178536e-01
10777	OR10G2	5.753738e-02
10778	OR10G3	4.123540e-01
10779	OR10G4	6.522604e-02
10780	OR10G7	8.621609e-01
10781	OR10G8	1.602282e-04
10782	OR10G9	7.895510e-02
10783	OR10H1	1
10784	OR10H2	1
10785	OR10H3	6.882024e-01
10786	OR10H4	5.045683e-01
10787	OR10H5	1
10788	OR10J1	2.570746e-02
10789	OR10J3	4.669721e-01
10790	OR10J5	1.934631e-01
10791	OR10K1	7.004243e-01
10792	OR10K2	1.701029e-04
10793	OR10P1	7.394399e-01
10794	OR10Q1	1
10795	OR10R2	3.237400e-01
10796	OR10S1	2.980400e-01
10797	OR10T2	2.329942e-04
10798	OR10V1	7.472823e-02
10799	OR10W1	1.621793e-02
10800	OR10X1	3.333629e-03
10801	OR10Z1	4.144958e-02
10802	OR11A1	1
10803	OR11G2	1.715970e-01
10804	OR11H1	2.505944e-01
10805	OR11H12	6.400068e-01
10806	OR11H4	2.148497e-03
10807	OR11H6	1
10808	OR11L1	4.961844e-03
10809	OR12D2	3.793940e-01
10810	OR12D3	1
10811	OR13A1	1.974518e-01
10812	OR13C2	2.580113e-01
10813	OR13C3	4.665697e-02
10814	OR13C4	7.081743e-03
10815	OR13C5	5.801072e-03
10816	OR13C8	1
10817	OR13C9	5.173196e-01
10818	OR13D1	7.146800e-01
10819	OR13F1	6.652205e-01
10820	OR13G1	5.788774e-05
10821	OR13H1	4.359008e-01
10822	OR13J1	1
10823	OR14A16	5.504761e-05
10824	OR14C36	6.364279e-01
10825	OR14I1	1.690387e-05
10826	OR14J1	2.436886e-01
10827	OR1A1	8.904696e-02
10828	OR1A2	1
10829	OR1B1	5.373542e-01
10830	OR1C1	1.756225e-01
10831	OR1D2	6.950773e-01
10832	OR1E1	3.358306e-01
10833	OR1E2	1
10834	OR1F1	8.208735e-01
10835	OR1G1	1
10836	OR1I1	3.501461e-01
10837	OR1J1	7.030606e-01
10838	OR1J2	8.142591e-02
10839	OR1J4	8.814520e-02
10840	OR1K1	4.211681e-01
10841	OR1L1	1.462661e-01
10842	OR1L3	1.366027e-01
10843	OR1L4	1.202260e-01
10844	OR1L6	7.125074e-01
10845	OR1L8	1.181790e-01
10846	OR1M1	3.199144e-02
10847	OR1N1	1
10848	OR1N2	1
10849	OR1Q1	3.746546e-02
10850	OR1S1	7.072916e-02
10851	OR1S2	6.044142e-01
10852	OR2A1	1
10853	OR2A12	7.350114e-01
10854	OR2A14	2.883640e-01
10855	OR2A2	7.432039e-03
10856	OR2A25	6.887390e-03
Done

Running MutSig 2:
Scatter job 120: processing genes 10767 - 10856
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR13G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.918711e-03	ci left: 9.350622e-01	ci right 9.444796e-01	k: 9399	n:10000
Cons ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
KS ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
OR13G1   10000 perm   2 sec   (6093 perm/sec)   p_kst 8.104000e-01   p_cons 9.485000e-01   p_joint 9.399000e-01

Outputting figure to mutsig2_images.part000000000120/OR13G1.16_928_10000_0.8104_0.9485_0.9399.png
                gene_name: OR13G1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 1 percent done.
OR10K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
Cons ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
KS ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
OR10K2   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.553000e-01   p_cons 3.620000e-02   p_joint 1.182000e-01

Joint ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
Cons ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
KS ci ratio: 2.479096e-02	ci left: 5.486307e-01	ci right 5.624531e-01	k: 11111	n:20000
OR10K2   20000 perm   3 sec   (5938 perm/sec)   p_kst 5.555500e-01   p_cons 3.830000e-02   p_joint 1.243000e-01

Joint ci ratio: 5.333886e-02	ci left: 1.484820e-01	ci right 1.566521e-01	k: 4576	n:30000
Cons ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
KS ci ratio: 2.030029e-02	ci left: 5.484870e-01	ci right 5.597692e-01	k: 16624	n:30000
OR10K2   30000 perm   5 sec   (5713 perm/sec)   p_kst 5.541333e-01   p_cons 3.993333e-02   p_joint 1.525333e-01

Joint ci ratio: 4.622273e-02	ci left: 1.488659e-01	ci right 1.559346e-01	k: 6095	n:40000
Cons ci ratio: 9.645934e-02	ci left: 3.773427e-02	ci right 4.158293e-02	k: 1585	n:40000
KS ci ratio: 1.759707e-02	ci left: 5.487872e-01	ci right 5.585551e-01	k: 22147	n:40000
OR10K2   40000 perm   7 sec   (5550 perm/sec)   p_kst 5.536750e-01   p_cons 3.962500e-02   p_joint 1.523750e-01

Outputting figure to mutsig2_images.part000000000120/OR10K2.13_941_40000_0.55368_0.039625_0.15238.png
                gene_name: OR10K2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 3 percent done.
OR14A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
Cons ci ratio: 7.671024e-03	ci left: 9.593225e-01	ci right 9.668046e-01	k: 9632	n:10000
KS ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
OR14A16   10000 perm   1 sec   (6806 perm/sec)   p_kst 5.673000e-01   p_cons 9.632000e-01   p_joint 7.891000e-01

Outputting figure to mutsig2_images.part000000000120/OR14A16.13_934_10000_0.5673_0.9632_0.7891.png
                gene_name: OR14A16
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 4 percent done.
OR1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
Cons ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
KS ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
OR1C1   10000 perm   2 sec   (5869 perm/sec)   p_kst 2.581000e-01   p_cons 8.590000e-01   p_joint 4.947000e-01

Outputting figure to mutsig2_images.part000000000120/OR1C1.13_947_10000_0.2581_0.859_0.4947.png
                gene_name: OR1C1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 5 percent done.
OR1S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
Cons ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
OR1S2   10000 perm   2 sec   (6100 perm/sec)   p_kst 8.571000e-01   p_cons 2.156000e-01   p_joint 6.277000e-01

Outputting figure to mutsig2_images.part000000000120/OR1S2.13_981_10000_0.8571_0.2156_0.6277.png
                gene_name: OR1S2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 6 percent done.
OR10Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
Cons ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
KS ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
OR10Q1   10000 perm   2 sec   (6384 perm/sec)   p_kst 3.677000e-01   p_cons 6.317000e-01   p_joint 5.556000e-01

Outputting figure to mutsig2_images.part000000000120/OR10Q1.12_964_10000_0.3677_0.6317_0.5556.png
                gene_name: OR10Q1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 8 percent done.
OR14I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
Cons ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
OR14I1   10000 perm   1 sec   (6870 perm/sec)   p_kst 5.218000e-01   p_cons 4.380000e-01   p_joint 7.163000e-01

Outputting figure to mutsig2_images.part000000000120/OR14I1.12_940_10000_0.5218_0.438_0.7163.png
                gene_name: OR14I1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 9 percent done.
OR10J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
OR10J3   10000 perm   2 sec   (6427 perm/sec)   p_kst 1.610000e-02   p_cons 9.100000e-03   p_joint 7.600000e-03

Joint ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
Cons ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
KS ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
OR10J3   20000 perm   3 sec   (5775 perm/sec)   p_kst 1.530000e-02   p_cons 9.350000e-03   p_joint 7.150000e-03

Joint ci ratio: 2.008844e-01	ci left: 1.127349e-02	ci right 1.382221e-02	k: 375	n:30000
Cons ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
KS ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
OR10J3   30000 perm   5 sec   (5518 perm/sec)   p_kst 1.553333e-02   p_cons 9.333333e-03   p_joint 1.250000e-02

Joint ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
Cons ci ratio: 2.006657e-01	ci left: 8.501350e-03	ci right 1.042088e-02	k: 377	n:40000
KS ci ratio: 1.567185e-01	ci left: 1.419202e-02	ci right 1.662907e-02	k: 615	n:40000
OR10J3   40000 perm   7 sec   (5348 perm/sec)   p_kst 1.537500e-02   p_cons 9.425000e-03   p_joint 9.975000e-03

Joint ci ratio: 1.866959e-01	ci left: 7.923694e-03	ci right 9.574101e-03	k: 436	n:50000
Cons ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
KS ci ratio: 1.405449e-01	ci left: 1.424234e-02	ci right 1.641446e-02	k: 765	n:50000
OR10J3   50000 perm   10 sec   (5212 perm/sec)   p_kst 1.530000e-02   p_cons 9.380000e-03   p_joint 8.720000e-03

Joint ci ratio: 1.981049e-01	ci left: 5.840935e-03	ci right 7.140827e-03	k: 388	n:60000
Cons ci ratio: 1.604498e-01	ci left: 9.059234e-03	ci right 1.065538e-02	k: 590	n:60000
KS ci ratio: 1.276803e-01	ci left: 1.447830e-02	ci right 1.646897e-02	k: 927	n:60000
OR10J3   60000 perm   12 sec   (5092 perm/sec)   p_kst 1.545000e-02   p_cons 9.833333e-03   p_joint 6.466667e-03

Joint ci ratio: 1.748555e-01	ci left: 6.505035e-03	ci right 7.764911e-03	k: 498	n:70000
Cons ci ratio: 1.538770e-01	ci left: 8.478507e-03	ci right 9.905480e-03	k: 642	n:70000
KS ci ratio: 1.158235e-01	ci left: 1.516671e-02	ci right 1.704514e-02	k: 1126	n:70000
OR10J3   70000 perm   14 sec   (4981 perm/sec)   p_kst 1.608571e-02   p_cons 9.171429e-03   p_joint 7.114286e-03

Joint ci ratio: 1.945330e-01	ci left: 4.558686e-03	ci right 5.552729e-03	k: 403	n:80000
Cons ci ratio: 1.441228e-01	ci left: 8.501790e-03	ci right 9.834170e-03	k: 732	n:80000
KS ci ratio: 1.100488e-01	ci left: 1.475263e-02	ci right 1.648276e-02	k: 1248	n:80000
OR10J3   80000 perm   16 sec   (4884 perm/sec)   p_kst 1.560000e-02   p_cons 9.150000e-03   p_joint 5.037500e-03

Joint ci ratio: 2.009314e-01	ci left: 3.787981e-03	ci right 4.644460e-03	k: 378	n:90000
Cons ci ratio: 1.356006e-01	ci left: 8.575811e-03	ci right 9.833906e-03	k: 827	n:90000
KS ci ratio: 1.038349e-01	ci left: 1.477882e-02	ci right 1.640817e-02	k: 1402	n:90000
OR10J3   90000 perm   19 sec   (4791 perm/sec)   p_kst 1.557778e-02   p_cons 9.188889e-03   p_joint 4.200000e-03

Joint ci ratio: 2.073884e-01	ci left: 3.190834e-03	ci right 3.938417e-03	k: 355	n:100000
Cons ci ratio: 1.261738e-01	ci left: 8.956468e-03	ci right 1.017223e-02	k: 955	n:100000
KS ci ratio: 9.859929e-02	ci left: 1.479223e-02	ci right 1.633606e-02	k: 1555	n:100000
OR10J3   100000 perm   21 sec   (4704 perm/sec)   p_kst 1.555000e-02   p_cons 9.550000e-03   p_joint 3.550000e-03

Joint ci ratio: 1.976359e-01	ci left: 3.211446e-03	ci right 3.924214e-03	k: 391	n:110000
Cons ci ratio: 1.206267e-01	ci left: 8.935170e-03	ci right 1.009091e-02	k: 1045	n:110000
KS ci ratio: 9.419543e-02	ci left: 1.476937e-02	ci right 1.623816e-02	k: 1704	n:110000
OR10J3   110000 perm   24 sec   (4619 perm/sec)   p_kst 1.549091e-02   p_cons 9.500000e-03   p_joint 3.554545e-03

Joint ci ratio: 1.880422e-01	ci left: 3.269014e-03	ci right 3.955320e-03	k: 432	n:120000
Cons ci ratio: 1.148876e-01	ci left: 9.056015e-03	ci right 1.016788e-02	k: 1152	n:120000
KS ci ratio: 8.957577e-02	ci left: 1.500421e-02	ci right 1.641934e-02	k: 1884	n:120000
OR10J3   120000 perm   26 sec   (4543 perm/sec)   p_kst 1.570000e-02   p_cons 9.600000e-03   p_joint 3.600000e-03

Joint ci ratio: 1.880685e-01	ci left: 3.017513e-03	ci right 3.651114e-03	k: 432	n:130000
Cons ci ratio: 1.108782e-01	ci left: 8.994769e-03	ci right 1.005805e-02	k: 1237	n:130000
KS ci ratio: 8.642966e-02	ci left: 1.490323e-02	ci right 1.625697e-02	k: 2024	n:130000
OR10J3   130000 perm   29 sec   (4464 perm/sec)   p_kst 1.556923e-02   p_cons 9.515385e-03   p_joint 3.323077e-03

Joint ci ratio: 1.397864e-01	ci left: 5.195119e-03	ci right 5.982713e-03	k: 781	n:140000
Cons ci ratio: 1.070165e-01	ci left: 8.984572e-03	ci right 1.000733e-02	k: 1328	n:140000
KS ci ratio: 8.339786e-02	ci left: 1.488738e-02	ci right 1.618994e-02	k: 2174	n:140000
OR10J3   140000 perm   32 sec   (4388 perm/sec)   p_kst 1.552857e-02   p_cons 9.485714e-03   p_joint 5.578571e-03

Joint ci ratio: 1.434538e-01	ci left: 4.597887e-03	ci right 5.314788e-03	k: 742	n:150000
Cons ci ratio: 1.030932e-01	ci left: 9.054244e-03	ci right 1.004485e-02	k: 1431	n:150000
KS ci ratio: 8.034890e-02	ci left: 1.499199e-02	ci right 1.625350e-02	k: 2342	n:150000
OR10J3   150000 perm   35 sec   (4318 perm/sec)   p_kst 1.561333e-02   p_cons 9.540000e-03   p_joint 4.946667e-03

Joint ci ratio: 1.438657e-01	ci left: 4.286367e-03	ci right 4.956778e-03	k: 738	n:160000
Cons ci ratio: 9.996729e-02	ci left: 9.042659e-03	ci right 1.000024e-02	k: 1522	n:160000
KS ci ratio: 7.783231e-02	ci left: 1.499846e-02	ci right 1.621919e-02	k: 2496	n:160000
OR10J3   160000 perm   38 sec   (4248 perm/sec)   p_kst 1.560000e-02   p_cons 9.512500e-03   p_joint 4.612500e-03

Joint ci ratio: 1.481755e-01	ci left: 3.796122e-03	ci right 4.409215e-03	k: 696	n:170000
Cons ci ratio: 9.671700e-02	ci left: 9.107472e-03	ci right 1.003878e-02	k: 1626	n:170000
KS ci ratio: 7.533645e-02	ci left: 1.508553e-02	ci right 1.627225e-02	k: 2664	n:170000
OR10J3   170000 perm   41 sec   (4180 perm/sec)   p_kst 1.567059e-02   p_cons 9.564706e-03   p_joint 4.094118e-03

Joint ci ratio: 1.448905e-01	ci left: 3.756480e-03	ci right 4.348557e-03	k: 728	n:180000
Cons ci ratio: 9.381915e-02	ci left: 9.154677e-03	ci right 1.006122e-02	k: 1728	n:180000
KS ci ratio: 7.331643e-02	ci left: 1.505983e-02	ci right 1.621140e-02	k: 2813	n:180000
OR10J3   180000 perm   44 sec   (4118 perm/sec)   p_kst 1.562778e-02   p_cons 9.600000e-03   p_joint 4.044444e-03

Joint ci ratio: 1.436261e-01	ci left: 3.624704e-03	ci right 4.190597e-03	k: 741	n:190000
Cons ci ratio: 9.147021e-02	ci left: 9.135557e-03	ci right 1.001635e-02	k: 1818	n:190000
KS ci ratio: 7.154882e-02	ci left: 1.499585e-02	ci right 1.611374e-02	k: 2954	n:190000
OR10J3   190000 perm   47 sec   (4057 perm/sec)   p_kst 1.554737e-02   p_cons 9.568421e-03   p_joint 3.900000e-03

Joint ci ratio: 1.407195e-01	ci left: 3.592951e-03	ci right 4.141583e-03	k: 772	n:200000
Cons ci ratio: 8.886726e-02	ci left: 9.206618e-03	ci right 1.006768e-02	k: 1926	n:200000
KS ci ratio: 6.960688e-02	ci left: 1.506634e-02	ci right 1.615776e-02	k: 3121	n:200000
OR10J3   200000 perm   50 sec   (3997 perm/sec)   p_kst 1.560500e-02   p_cons 9.630000e-03   p_joint 3.860000e-03

Joint ci ratio: 1.113985e-01	ci left: 5.535231e-03	ci right 6.192807e-03	k: 1230	n:210000
Cons ci ratio: 8.656050e-02	ci left: 9.252591e-03	ci right 1.009436e-02	k: 2030	n:210000
KS ci ratio: 6.763756e-02	ci left: 1.521009e-02	ci right 1.627953e-02	k: 3305	n:210000
OR10J3   210000 perm   53 sec   (3939 perm/sec)   p_kst 1.573810e-02   p_cons 9.666667e-03   p_joint 5.857143e-03

Joint ci ratio: 1.105587e-01	ci left: 5.367570e-03	ci right 6.000106e-03	k: 1249	n:220000
Cons ci ratio: 8.468525e-02	ci left: 9.236795e-03	ci right 1.005802e-02	k: 2121	n:220000
KS ci ratio: 6.606725e-02	ci left: 1.522937e-02	ci right 1.627435e-02	k: 3464	n:220000
OR10J3   220000 perm   57 sec   (3879 perm/sec)   p_kst 1.574545e-02   p_cons 9.640909e-03   p_joint 5.677273e-03

Joint ci ratio: 1.131495e-01	ci left: 4.897463e-03	ci right 5.489025e-03	k: 1193	n:230000
Cons ci ratio: 8.268195e-02	ci left: 9.277914e-03	ci right 1.008234e-02	k: 2225	n:230000
KS ci ratio: 6.473772e-02	ci left: 1.518306e-02	ci right 1.620311e-02	k: 3608	n:230000
OR10J3   230000 perm   60 sec   (3825 perm/sec)   p_kst 1.568696e-02   p_cons 9.673913e-03   p_joint 5.186957e-03

Joint ci ratio: 1.119896e-01	ci left: 4.794621e-03	ci right 5.367432e-03	k: 1218	n:240000
Cons ci ratio: 8.090211e-02	ci left: 9.295400e-03	ci right 1.008318e-02	k: 2324	n:240000
KS ci ratio: 6.345100e-02	ci left: 1.515721e-02	ci right 1.615454e-02	k: 3756	n:240000
OR10J3   240000 perm   64 sec   (3771 perm/sec)   p_kst 1.565000e-02   p_cons 9.683333e-03   p_joint 5.075000e-03

Joint ci ratio: 1.155808e-01	ci left: 4.315197e-03	ci right 4.848389e-03	k: 1144	n:250000
Cons ci ratio: 7.919948e-02	ci left: 9.319501e-03	ci right 1.009193e-02	k: 2425	n:250000
KS ci ratio: 6.202061e-02	ci left: 1.523996e-02	ci right 1.621931e-02	k: 3931	n:250000
OR10J3   250000 perm   67 sec   (3719 perm/sec)   p_kst 1.572400e-02   p_cons 9.700000e-03   p_joint 4.576000e-03

Joint ci ratio: 1.242851e-01	ci left: 3.574579e-03	ci right 4.051971e-03	k: 990	n:260000
Cons ci ratio: 7.795907e-02	ci left: 9.255151e-03	ci right 1.000969e-02	k: 2503	n:260000
KS ci ratio: 6.082589e-02	ci left: 1.524459e-02	ci right 1.620471e-02	k: 4087	n:260000
OR10J3   260000 perm   71 sec   (3670 perm/sec)   p_kst 1.571923e-02   p_cons 9.626923e-03   p_joint 3.807692e-03

Joint ci ratio: 1.229928e-01	ci left: 3.517553e-03	ci right 3.982088e-03	k: 1011	n:270000
Cons ci ratio: 7.673014e-02	ci left: 9.206556e-03	ci right 9.944769e-03	k: 2584	n:270000
KS ci ratio: 5.966196e-02	ci left: 1.526730e-02	ci right 1.620981e-02	k: 4248	n:270000
OR10J3   270000 perm   75 sec   (3621 perm/sec)   p_kst 1.573333e-02   p_cons 9.570370e-03   p_joint 3.744444e-03

Joint ci ratio: 1.225763e-01	ci left: 3.416147e-03	ci right 3.865652e-03	k: 1018	n:280000
Cons ci ratio: 7.534383e-02	ci left: 9.214090e-03	ci right 9.938973e-03	k: 2680	n:280000
KS ci ratio: 5.872495e-02	ci left: 1.520406e-02	ci right 1.612743e-02	k: 4385	n:280000
OR10J3   280000 perm   78 sec   (3573 perm/sec)   p_kst 1.566071e-02   p_cons 9.571429e-03   p_joint 3.635714e-03

Joint ci ratio: 1.205817e-01	ci left: 3.412024e-03	ci right 3.853159e-03	k: 1052	n:290000
Cons ci ratio: 7.408393e-02	ci left: 9.207676e-03	ci right 9.919418e-03	k: 2772	n:290000
KS ci ratio: 5.777236e-02	ci left: 1.517589e-02	ci right 1.608210e-02	k: 4531	n:290000
OR10J3   290000 perm   82 sec   (3525 perm/sec)   p_kst 1.562414e-02   p_cons 9.558621e-03   p_joint 3.627586e-03

Joint ci ratio: 1.204742e-01	ci left: 3.304745e-03	ci right 3.731601e-03	k: 1054	n:300000
Cons ci ratio: 7.289804e-02	ci left: 9.198510e-03	ci right 9.897680e-03	k: 2863	n:300000
KS ci ratio: 5.680303e-02	ci left: 1.518258e-02	ci right 1.607348e-02	k: 4687	n:300000
OR10J3   300000 perm   86 sec   (3477 perm/sec)   p_kst 1.562333e-02   p_cons 9.543333e-03   p_joint 3.513333e-03

Joint ci ratio: 1.159376e-01	ci left: 3.461114e-03	ci right 3.890182e-03	k: 1138	n:310000
Cons ci ratio: 7.550703e-02	ci left: 8.293771e-03	ci right 8.947723e-03	k: 2671	n:310000
KS ci ratio: 5.585748e-02	ci left: 1.520169e-02	ci right 1.607837e-02	k: 4847	n:310000
OR10J3   310000 perm   90 sec   (3433 perm/sec)   p_kst 1.563548e-02   p_cons 8.616129e-03   p_joint 3.670968e-03

Joint ci ratio: 1.159954e-01	ci left: 3.349909e-03	ci right 3.765411e-03	k: 1137	n:320000
Cons ci ratio: 7.433409e-02	ci left: 8.295239e-03	ci right 8.938707e-03	k: 2756	n:320000
KS ci ratio: 5.508067e-02	ci left: 1.515189e-02	ci right 1.601317e-02	k: 4985	n:320000
OR10J3   320000 perm   94 sec   (3388 perm/sec)   p_kst 1.557812e-02   p_cons 8.612500e-03   p_joint 3.553125e-03

Joint ci ratio: 1.160016e-01	ci left: 3.248387e-03	ci right 3.651320e-03	k: 1137	n:330000
Cons ci ratio: 7.320119e-02	ci left: 8.299668e-03	ci right 8.933249e-03	k: 2842	n:330000
KS ci ratio: 5.426013e-02	ci left: 1.514705e-02	ci right 1.599482e-02	k: 5137	n:330000
OR10J3   330000 perm   99 sec   (3346 perm/sec)   p_kst 1.556667e-02   p_cons 8.612121e-03   p_joint 3.445455e-03

Joint ci ratio: 1.153987e-01	ci left: 3.187113e-03	ci right 3.580250e-03	k: 1149	n:340000
Cons ci ratio: 7.201941e-02	ci left: 8.327014e-03	ci right 8.951992e-03	k: 2936	n:340000
KS ci ratio: 5.344443e-02	ci left: 1.516000e-02	ci right 1.599535e-02	k: 5295	n:340000
OR10J3   340000 perm   103 sec   (3307 perm/sec)   p_kst 1.557353e-02   p_cons 8.635294e-03   p_joint 3.379412e-03

Joint ci ratio: 1.138745e-01	ci left: 3.182084e-03	ci right 3.569068e-03	k: 1180	n:350000
Cons ci ratio: 7.086949e-02	ci left: 8.358490e-03	ci right 8.975401e-03	k: 3032	n:350000
KS ci ratio: 5.262525e-02	ci left: 1.519486e-02	ci right 1.601890e-02	k: 5461	n:350000
OR10J3   350000 perm   107 sec   (3269 perm/sec)   p_kst 1.560286e-02   p_cons 8.662857e-03   p_joint 3.371429e-03

Joint ci ratio: 1.130663e-01	ci left: 3.139570e-03	ci right 3.518494e-03	k: 1197	n:360000
Cons ci ratio: 6.964955e-02	ci left: 8.418319e-03	ci right 9.028518e-03	k: 3139	n:360000
KS ci ratio: 5.192704e-02	ci left: 1.517851e-02	ci right 1.599042e-02	k: 5609	n:360000
OR10J3   360000 perm   111 sec   (3229 perm/sec)   p_kst 1.558056e-02   p_cons 8.719444e-03   p_joint 3.325000e-03

Joint ci ratio: 1.119979e-01	ci left: 3.115127e-03	ci right 3.487313e-03	k: 1220	n:370000
Cons ci ratio: 6.876881e-02	ci left: 8.405925e-03	ci right 9.007213e-03	k: 3220	n:370000
KS ci ratio: 5.132384e-02	ci left: 1.512309e-02	ci right 1.592236e-02	k: 5742	n:370000
OR10J3   370000 perm   116 sec   (3191 perm/sec)   p_kst 1.551892e-02   p_cons 8.702703e-03   p_joint 3.297297e-03

Joint ci ratio: 1.106473e-01	ci left: 3.109899e-03	ci right 3.476687e-03	k: 1250	n:380000
Cons ci ratio: 6.779649e-02	ci left: 8.425277e-03	ci right 9.019093e-03	k: 3313	n:380000
KS ci ratio: 5.065806e-02	ci left: 1.512001e-02	ci right 1.590845e-02	k: 5894	n:380000
OR10J3   380000 perm   120 sec   (3154 perm/sec)   p_kst 1.551053e-02   p_cons 8.718421e-03   p_joint 3.289474e-03

Joint ci ratio: 1.158795e-01	ci left: 2.756063e-03	ci right 3.097542e-03	k: 1140	n:390000
Cons ci ratio: 6.696349e-02	ci left: 8.418478e-03	ci right 9.004241e-03	k: 3396	n:390000
KS ci ratio: 5.000074e-02	ci left: 1.512729e-02	ci right 1.590557e-02	k: 6050	n:390000
OR10J3   390000 perm   125 sec   (3116 perm/sec)   p_kst 1.551282e-02   p_cons 8.707692e-03   p_joint 2.923077e-03

Joint ci ratio: 1.147793e-01	ci left: 2.740574e-03	ci right 3.076691e-03	k: 1162	n:400000
Cons ci ratio: 6.617004e-02	ci left: 8.409602e-03	ci right 8.987549e-03	k: 3478	n:400000
KS ci ratio: 4.942906e-02	ci left: 1.509722e-02	ci right 1.586482e-02	k: 6191	n:400000
OR10J3   400000 perm   130 sec   (3079 perm/sec)   p_kst 1.547750e-02   p_cons 8.695000e-03   p_joint 2.905000e-03

Joint ci ratio: 1.134700e-01	ci left: 2.737704e-03	ci right 3.069383e-03	k: 1189	n:410000
Cons ci ratio: 6.538563e-02	ci left: 8.405997e-03	ci right 8.976588e-03	k: 3562	n:410000
KS ci ratio: 4.881395e-02	ci left: 1.510722e-02	ci right 1.586550e-02	k: 6348	n:410000
OR10J3   410000 perm   135 sec   (3046 perm/sec)   p_kst 1.548293e-02   p_cons 8.687805e-03   p_joint 2.900000e-03

Joint ci ratio: 1.126697e-01	ci left: 2.711850e-03	ci right 3.037925e-03	k: 1206	n:420000
Cons ci ratio: 6.458383e-02	ci left: 8.414317e-03	ci right 8.978207e-03	k: 3651	n:420000
KS ci ratio: 4.828915e-02	ci left: 1.507445e-02	ci right 1.582273e-02	k: 6487	n:420000
OR10J3   420000 perm   139 sec   (3012 perm/sec)   p_kst 1.544524e-02   p_cons 8.692857e-03   p_joint 2.871429e-03

Joint ci ratio: 1.121159e-01	ci left: 2.675904e-03	ci right 2.995970e-03	k: 1218	n:430000
Cons ci ratio: 6.390566e-02	ci left: 8.397114e-03	ci right 8.953723e-03	k: 3729	n:430000
KS ci ratio: 4.774799e-02	ci left: 1.506393e-02	ci right 1.580308e-02	k: 6635	n:430000
OR10J3   430000 perm   144 sec   (2979 perm/sec)   p_kst 1.543023e-02   p_cons 8.672093e-03   p_joint 2.832558e-03

Joint ci ratio: 1.107166e-01	ci left: 2.683579e-03	ci right 3.000297e-03	k: 1249	n:440000
Cons ci ratio: 6.305660e-02	ci left: 8.432177e-03	ci right 8.983413e-03	k: 3830	n:440000
KS ci ratio: 4.722463e-02	ci left: 1.505394e-02	ci right 1.578428e-02	k: 6783	n:440000
OR10J3   440000 perm   149 sec   (2945 perm/sec)   p_kst 1.541591e-02   p_cons 8.704545e-03   p_joint 2.838636e-03

Joint ci ratio: 1.090275e-01	ci left: 2.708231e-03	ci right 3.022669e-03	k: 1288	n:450000
Cons ci ratio: 6.073158e-02	ci left: 8.894646e-03	ci right 9.453923e-03	k: 4127	n:450000
KS ci ratio: 4.663278e-02	ci left: 1.509935e-02	ci right 1.582246e-02	k: 6956	n:450000
OR10J3   450000 perm   154 sec   (2914 perm/sec)   p_kst 1.545778e-02   p_cons 9.171111e-03   p_joint 2.862222e-03

Joint ci ratio: 1.090734e-01	ci left: 2.647237e-03	ci right 2.954731e-03	k: 1287	n:460000
Cons ci ratio: 6.005155e-02	ci left: 8.902547e-03	ci right 9.455835e-03	k: 4221	n:460000
KS ci ratio: 4.604951e-02	ci left: 1.515144e-02	ci right 1.586773e-02	k: 7133	n:460000
OR10J3   460000 perm   160 sec   (2883 perm/sec)   p_kst 1.550652e-02   p_cons 9.176087e-03   p_joint 2.797826e-03

Joint ci ratio: 1.086545e-01	ci left: 2.611608e-03	ci right 2.913723e-03	k: 1297	n:470000
Cons ci ratio: 5.939387e-02	ci left: 8.910146e-03	ci right 9.457633e-03	k: 4315	n:470000
KS ci ratio: 4.558586e-02	ci left: 1.513614e-02	ci right 1.584432e-02	k: 7279	n:470000
OR10J3   470000 perm   165 sec   (2852 perm/sec)   p_kst 1.548723e-02   p_cons 9.180851e-03   p_joint 2.759574e-03

Joint ci ratio: 1.078689e-01	ci left: 2.595710e-03	ci right 2.893676e-03	k: 1316	n:480000
Cons ci ratio: 5.873717e-02	ci left: 8.923618e-03	ci right 9.465664e-03	k: 4412	n:480000
KS ci ratio: 4.506818e-02	ci left: 1.516684e-02	ci right 1.586819e-02	k: 7447	n:480000
OR10J3   480000 perm   170 sec   (2822 perm/sec)   p_kst 1.551458e-02   p_cons 9.191667e-03   p_joint 2.741667e-03

Joint ci ratio: 1.114049e-01	ci left: 2.379962e-03	ci right 2.662706e-03	k: 1234	n:490000
Cons ci ratio: 5.819301e-02	ci left: 8.908413e-03	ci right 9.444354e-03	k: 4495	n:490000
KS ci ratio: 4.465417e-02	ci left: 1.513780e-02	ci right 1.583121e-02	k: 7586	n:490000
OR10J3   490000 perm   175 sec   (2794 perm/sec)   p_kst 1.548163e-02   p_cons 9.173469e-03   p_joint 2.518367e-03

Joint ci ratio: 1.109582e-01	ci left: 2.351805e-03	ci right 2.630010e-03	k: 1244	n:500000
Cons ci ratio: 5.756229e-02	ci left: 8.925381e-03	ci right 9.456329e-03	k: 4594	n:500000
KS ci ratio: 4.418172e-02	ci left: 1.515743e-02	ci right 1.584420e-02	k: 7749	n:500000
OR10J3   500000 perm   181 sec   (2768 perm/sec)   p_kst 1.549800e-02   p_cons 9.188000e-03   p_joint 2.488000e-03

Joint ci ratio: 1.102969e-01	ci left: 2.334288e-03	ci right 2.608668e-03	k: 1259	n:510000
Cons ci ratio: 5.702526e-02	ci left: 8.918517e-03	ci right 9.443944e-03	k: 4681	n:510000
KS ci ratio: 4.379428e-02	ci left: 1.512783e-02	ci right 1.580710e-02	k: 7887	n:510000
OR10J3   510000 perm   186 sec   (2740 perm/sec)   p_kst 1.546471e-02   p_cons 9.178431e-03   p_joint 2.468627e-03

Joint ci ratio: 1.105637e-01	ci left: 2.278174e-03	ci right 2.546649e-03	k: 1253	n:520000
Cons ci ratio: 5.640755e-02	ci left: 8.942278e-03	ci right 9.463212e-03	k: 4784	n:520000
KS ci ratio: 4.337845e-02	ci left: 1.512603e-02	ci right 1.579861e-02	k: 8039	n:520000
OR10J3   520000 perm   192 sec   (2712 perm/sec)   p_kst 1.545962e-02   p_cons 9.200000e-03   p_joint 2.409615e-03

Joint ci ratio: 1.106547e-01	ci left: 2.231517e-03	ci right 2.494724e-03	k: 1251	n:530000
Cons ci ratio: 5.583833e-02	ci left: 8.955868e-03	ci right 9.472160e-03	k: 4882	n:530000
KS ci ratio: 4.296624e-02	ci left: 1.512993e-02	ci right 1.579613e-02	k: 8194	n:530000
OR10J3   530000 perm   197 sec   (2685 perm/sec)   p_kst 1.546038e-02   p_cons 9.211321e-03   p_joint 2.360377e-03

Joint ci ratio: 1.092237e-01	ci left: 2.249625e-03	ci right 2.511315e-03	k: 1284	n:540000
Cons ci ratio: 5.529160e-02	ci left: 8.967154e-03	ci right 9.478873e-03	k: 4979	n:540000
KS ci ratio: 4.251647e-02	ci left: 1.516853e-02	ci right 1.582927e-02	k: 8368	n:540000
OR10J3   540000 perm   203 sec   (2659 perm/sec)   p_kst 1.549630e-02   p_cons 9.220370e-03   p_joint 2.377778e-03

Joint ci ratio: 9.271012e-02	ci left: 3.089749e-03	ci right 3.391885e-03	k: 1781	n:550000
Cons ci ratio: 5.480967e-02	ci left: 8.961912e-03	ci right 9.468733e-03	k: 5067	n:550000
KS ci ratio: 4.198577e-02	ci left: 1.527414e-02	ci right 1.593098e-02	k: 8580	n:550000
OR10J3   550000 perm   209 sec   (2634 perm/sec)   p_kst 1.560000e-02   p_cons 9.212727e-03   p_joint 3.238182e-03

Outputting figure to mutsig2_images.part000000000120/OR10J3.11_992_550000_0.0156_0.0092127_0.0032382.png
                gene_name: OR10J3
               theta_stop: 0.093 
                    nperm: 550000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.0032 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 10 percent done.
OR10Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
Cons ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
KS ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
OR10Z1   10000 perm   2 sec   (6320 perm/sec)   p_kst 5.478000e-01   p_cons 1.240000e-02   p_joint 6.140000e-02

Joint ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
Cons ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
KS ci ratio: 2.444894e-02	ci left: 5.554910e-01	ci right 5.692909e-01	k: 11248	n:20000
OR10Z1   20000 perm   4 sec   (5696 perm/sec)   p_kst 5.624000e-01   p_cons 1.180000e-02   p_joint 4.045000e-02

Joint ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
Cons ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
KS ci ratio: 1.996695e-02	ci left: 5.566637e-01	ci right 5.679242e-01	k: 16869	n:30000
OR10Z1   30000 perm   5 sec   (5459 perm/sec)   p_kst 5.623000e-01   p_cons 1.126667e-02   p_joint 4.726667e-02

Joint ci ratio: 8.833088e-02	ci left: 4.484853e-02	ci right 4.901756e-02	k: 1876	n:40000
Cons ci ratio: 1.869226e-01	ci left: 9.857902e-03	ci right 1.191403e-02	k: 434	n:40000
KS ci ratio: 1.725345e-02	ci left: 5.585227e-01	ci right 5.682681e-01	k: 22536	n:40000
OR10Z1   40000 perm   8 sec   (5288 perm/sec)   p_kst 5.634000e-01   p_cons 1.085000e-02   p_joint 4.690000e-02

Joint ci ratio: 8.624208e-02	ci left: 3.796616e-02	ci right 4.140755e-02	k: 1983	n:50000
Cons ci ratio: 1.679322e-01	ci left: 9.874175e-03	ci right 1.170329e-02	k: 538	n:50000
KS ci ratio: 1.540948e-02	ci left: 5.597600e-01	ci right 5.684726e-01	k: 28206	n:50000
OR10Z1   50000 perm   10 sec   (5147 perm/sec)   p_kst 5.641200e-01   p_cons 1.076000e-02   p_joint 3.966000e-02

Joint ci ratio: 7.734790e-02	ci left: 3.945999e-02	ci right 4.265126e-02	k: 2462	n:60000
Cons ci ratio: 1.509358e-01	ci left: 1.027706e-02	ci right 1.197073e-02	k: 666	n:60000
KS ci ratio: 1.411045e-02	ci left: 5.586194e-01	ci right 5.665745e-01	k: 33756	n:60000
OR10Z1   60000 perm   12 sec   (5041 perm/sec)   p_kst 5.626000e-01   p_cons 1.110000e-02   p_joint 4.103333e-02

Joint ci ratio: 7.203618e-02	ci left: 3.912180e-02	ci right 4.205929e-02	k: 2840	n:70000
Cons ci ratio: 1.360033e-01	ci left: 1.093036e-02	ci right 1.253907e-02	k: 820	n:70000
KS ci ratio: 1.303764e-02	ci left: 5.599021e-01	ci right 5.672641e-01	k: 39451	n:70000
OR10Z1   70000 perm   14 sec   (4938 perm/sec)   p_kst 5.635857e-01   p_cons 1.171429e-02   p_joint 4.057143e-02

Joint ci ratio: 7.461485e-02	ci left: 3.210423e-02	ci right 3.460476e-02	k: 2667	n:80000
Cons ci ratio: 1.279310e-01	ci left: 1.085741e-02	ci right 1.235333e-02	k: 927	n:80000
KS ci ratio: 1.218102e-02	ci left: 5.607304e-01	ci right 5.676150e-01	k: 45134	n:80000
OR10Z1   80000 perm   17 sec   (4825 perm/sec)   p_kst 5.641750e-01   p_cons 1.158750e-02   p_joint 3.333750e-02

Joint ci ratio: 7.667441e-02	ci left: 2.713904e-02	ci right 2.931373e-02	k: 2539	n:90000
Cons ci ratio: 1.216204e-01	ci left: 1.071666e-02	ci right 1.211510e-02	k: 1026	n:90000
KS ci ratio: 1.146902e-02	ci left: 5.615867e-01	ci right 5.680758e-01	k: 50835	n:90000
OR10Z1   90000 perm   19 sec   (4736 perm/sec)   p_kst 5.648333e-01   p_cons 1.140000e-02   p_joint 2.821111e-02

Joint ci ratio: 6.443460e-02	ci left: 3.453882e-02	ci right 3.684821e-02	k: 3568	n:100000
Cons ci ratio: 1.153850e-01	ci left: 1.075122e-02	ci right 1.207734e-02	k: 1140	n:100000
KS ci ratio: 1.088211e-02	ci left: 5.616803e-01	ci right 5.678360e-01	k: 56476	n:100000
OR10Z1   100000 perm   21 sec   (4653 perm/sec)   p_kst 5.647600e-01   p_cons 1.140000e-02   p_joint 3.568000e-02

Joint ci ratio: 6.099351e-02	ci left: 3.508596e-02	ci right 3.730222e-02	k: 3980	n:110000
Cons ci ratio: 1.101530e-01	ci left: 1.075448e-02	ci right 1.201694e-02	k: 1251	n:110000
KS ci ratio: 1.038023e-02	ci left: 5.616092e-01	ci right 5.674783e-01	k: 62100	n:110000
OR10Z1   110000 perm   24 sec   (4573 perm/sec)   p_kst 5.645455e-01   p_cons 1.137273e-02   p_joint 3.618182e-02

Joint ci ratio: 6.008912e-02	ci left: 3.321988e-02	ci right 3.528604e-02	k: 4109	n:120000
Cons ci ratio: 1.065667e-01	ci left: 1.055546e-02	ci right 1.175168e-02	k: 1337	n:120000
KS ci ratio: 9.948843e-03	ci left: 5.612136e-01	ci right 5.668333e-01	k: 67683	n:120000
OR10Z1   120000 perm   27 sec   (4495 perm/sec)   p_kst 5.640250e-01   p_cons 1.114167e-02   p_joint 3.424167e-02

Joint ci ratio: 5.666319e-02	ci left: 3.450066e-02	ci right 3.652013e-02	k: 4615	n:130000
Cons ci ratio: 1.019777e-01	ci left: 1.066501e-02	ci right 1.181848e-02	k: 1460	n:130000
KS ci ratio: 9.553801e-03	ci left: 5.615685e-01	ci right 5.669671e-01	k: 73355	n:130000
OR10Z1   130000 perm   29 sec   (4423 perm/sec)   p_kst 5.642692e-01   p_cons 1.123077e-02   p_joint 3.550000e-02

Joint ci ratio: 4.863623e-02	ci left: 4.326335e-02	ci right 4.542700e-02	k: 6207	n:140000
Cons ci ratio: 9.840694e-02	ci left: 1.065532e-02	ci right 1.176506e-02	k: 1568	n:140000
KS ci ratio: 9.209582e-03	ci left: 5.614905e-01	ci right 5.666926e-01	k: 78973	n:140000
OR10Z1   140000 perm   32 sec   (4349 perm/sec)   p_kst 5.640929e-01   p_cons 1.120000e-02   p_joint 4.433571e-02

Outputting figure to mutsig2_images.part000000000120/OR10Z1.11_945_140000_0.56409_0.0112_0.044336.png
                gene_name: OR10Z1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 11 percent done.
OR10G8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
Cons ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
KS ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
OR10G8   10000 perm   2 sec   (6089 perm/sec)   p_kst 6.869000e-01   p_cons 1.870000e-01   p_joint 4.039000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G8.10_940_10000_0.6869_0.187_0.4039.png
                gene_name: OR10G8
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 13 percent done.
OR10R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
Cons ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
OR10R2   10000 perm   2 sec   (6487 perm/sec)   p_kst 4.950000e-02   p_cons 3.890000e-01   p_joint 1.132000e-01

Joint ci ratio: 7.470763e-02	ci left: 1.164613e-01	ci right 1.255492e-01	k: 2419	n:20000
Cons ci ratio: 3.344109e-02	ci left: 4.003798e-01	ci right 4.140472e-01	k: 8144	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
OR10R2   20000 perm   3 sec   (5824 perm/sec)   p_kst 5.050000e-02   p_cons 4.072000e-01   p_joint 1.209500e-01

Joint ci ratio: 6.319781e-02	ci left: 1.100629e-01	ci right 1.172787e-01	k: 3409	n:30000
Cons ci ratio: 2.722637e-02	ci left: 4.030298e-01	ci right 4.141879e-01	k: 12258	n:30000
KS ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
OR10R2   30000 perm   5 sec   (5544 perm/sec)   p_kst 5.143333e-02   p_cons 4.086000e-01   p_joint 1.136333e-01

Outputting figure to mutsig2_images.part000000000120/OR10R2.10_1011_30000_0.051433_0.4086_0.11363.png
                gene_name: OR10R2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
OR10A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
OR10A2   10000 perm   1 sec   (6933 perm/sec)   p_kst 6.799000e-01   p_cons 7.708000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10A2.9_916_10000_0.6799_0.7708_1.png
                gene_name: OR10A2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
OR10A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.276858e-03	ci left: 9.532564e-01	ci right 9.612745e-01	k: 9574	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
OR10A5   10000 perm   2 sec   (6383 perm/sec)   p_kst 9.109000e-01   p_cons 9.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10A5.9_958_10000_0.9109_0.9574_1.png
                gene_name: OR10A5
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
OR10G9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
Cons ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
KS ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
OR10G9   10000 perm   2 sec   (6108 perm/sec)   p_kst 2.903000e-01   p_cons 4.668000e-01   p_joint 4.106000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G9.9_938_10000_0.2903_0.4668_0.4106.png
                gene_name: OR10G9
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 18 percent done.
OR10X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
KS ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
OR10X1   10000 perm   1 sec   (6861 perm/sec)   p_kst 7.003000e-01   p_cons 7.017000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10X1.9_976_10000_0.7003_0.7017_1.png
                gene_name: OR10X1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
OR12D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
Cons ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
KS ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
OR12D2   10000 perm   2 sec   (6490 perm/sec)   p_kst 5.301000e-01   p_cons 8.481000e-01   p_joint 8.087000e-01

Outputting figure to mutsig2_images.part000000000120/OR12D2.9_928_10000_0.5301_0.8481_0.8087.png
                gene_name: OR12D2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 20 percent done.
OR2A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.636551e-02	ci left: 6.793193e-01	ci right 6.975708e-01	k: 6885	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
OR2A14   10000 perm   2 sec   (6561 perm/sec)   p_kst 5.841000e-01   p_cons 4.211000e-01   p_joint 6.885000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A14.9_936_10000_0.5841_0.4211_0.6885.png
                gene_name: OR2A14
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 22 percent done.
OR10AG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
KS ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
OR10AG1   10000 perm   2 sec   (6503 perm/sec)   p_kst 8.750000e-02   p_cons 8.700000e-01   p_joint 2.683000e-01

Joint ci ratio: 5.463518e-02	ci left: 1.990769e-01	ci right 2.103091e-01	k: 4093	n:20000
Cons ci ratio: 1.099812e-02	ci left: 8.591714e-01	ci right 8.687226e-01	k: 17280	n:20000
KS ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
OR10AG1   20000 perm   3 sec   (5862 perm/sec)   p_kst 8.720000e-02   p_cons 8.640000e-01   p_joint 2.046500e-01

Outputting figure to mutsig2_images.part000000000120/OR10AG1.8_909_20000_0.0872_0.864_0.20465.png
                gene_name: OR10AG1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
OR10G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
OR10G2   10000 perm   2 sec   (6518 perm/sec)   p_kst 8.355000e-01   p_cons 6.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10G2.8_936_10000_0.8355_0.658_1.png
                gene_name: OR10G2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
OR10T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
Cons ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
KS ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
OR10T2   10000 perm   2 sec   (6428 perm/sec)   p_kst 3.016000e-01   p_cons 4.786000e-01   p_joint 4.640000e-01

Outputting figure to mutsig2_images.part000000000120/OR10T2.8_947_10000_0.3016_0.4786_0.464.png
                gene_name: OR10T2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
OR11L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
Cons ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
KS ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
OR11L1   10000 perm   2 sec   (6120 perm/sec)   p_kst 3.152000e-01   p_cons 2.660000e-01   p_joint 3.077000e-01

Outputting figure to mutsig2_images.part000000000120/OR11L1.8_973_10000_0.3152_0.266_0.3077.png
                gene_name: OR11L1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 27 percent done.
OR2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
OR2A2   10000 perm   2 sec   (6615 perm/sec)   p_kst 4.181000e-01   p_cons 9.911000e-01   p_joint 6.199000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A2.8_959_10000_0.4181_0.9911_0.6199.png
                gene_name: OR2A2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 28 percent done.
OR10G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
Cons ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
KS ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
OR10G4   10000 perm   2 sec   (6251 perm/sec)   p_kst 3.390000e-02   p_cons 5.073000e-01   p_joint 1.341000e-01

Joint ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
Cons ci ratio: 2.769435e-02	ci left: 4.934458e-01	ci right 5.073540e-01	k: 10008	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
OR10G4   20000 perm   4 sec   (5612 perm/sec)   p_kst 3.330000e-02   p_cons 5.004000e-01   p_joint 1.141500e-01

Joint ci ratio: 7.046895e-02	ci left: 9.019560e-02	ci right 9.681670e-02	k: 2804	n:30000
Cons ci ratio: 2.342488e-02	ci left: 4.770973e-01	ci right 4.884393e-01	k: 14483	n:30000
KS ci ratio: 1.229612e-01	ci left: 3.074850e-02	ci right 3.480931e-02	k: 982	n:30000
OR10G4   30000 perm   6 sec   (5378 perm/sec)   p_kst 3.273333e-02   p_cons 4.827667e-01   p_joint 9.346667e-02

Joint ci ratio: 5.912847e-02	ci left: 9.606518e-02	ci right 1.019432e-01	k: 3959	n:40000
Cons ci ratio: 2.029459e-02	ci left: 4.776670e-01	ci right 4.874855e-01	k: 19303	n:40000
KS ci ratio: 1.070664e-01	ci left: 3.068636e-02	ci right 3.418195e-02	k: 1296	n:40000
OR10G4   40000 perm   8 sec   (5222 perm/sec)   p_kst 3.240000e-02   p_cons 4.825750e-01   p_joint 9.897500e-02

Joint ci ratio: 6.586214e-02	ci left: 6.397684e-02	ci right 6.835369e-02	k: 3307	n:50000
Cons ci ratio: 1.779021e-02	ci left: 4.882484e-01	ci right 4.970325e-01	k: 24632	n:50000
KS ci ratio: 9.549734e-02	ci left: 3.104105e-02	ci right 3.417352e-02	k: 1629	n:50000
OR10G4   50000 perm   10 sec   (5091 perm/sec)   p_kst 3.258000e-02   p_cons 4.926400e-01   p_joint 6.614000e-02

Outputting figure to mutsig2_images.part000000000120/OR10G4.7_938_50000_0.03258_0.49264_0.06614.png
                gene_name: OR10G4
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 29 percent done.
OR11H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KS ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
OR11H4   10000 perm   1 sec   (6812 perm/sec)   p_kst 5.073000e-01   p_cons 5.927000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000120/OR11H4.7_978_10000_0.5073_0.5927_0.7418.png
                gene_name: OR11H4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 30 percent done.
OR13C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
Cons ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
KS ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
OR13C5   10000 perm   1 sec   (7428 perm/sec)   p_kst 1.980000e-01   p_cons 4.579000e-01   p_joint 3.315000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C5.7_959_10000_0.198_0.4579_0.3315.png
                gene_name: OR13C5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 32 percent done.
OR14C36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
OR14C36   10000 perm   2 sec   (6508 perm/sec)   p_kst 6.629000e-01   p_cons 8.423000e-01   p_joint 9.139000e-01

Outputting figure to mutsig2_images.part000000000120/OR14C36.7_941_10000_0.6629_0.8423_0.9139.png
                gene_name: OR14C36
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 33 percent done.
OR1M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
Cons ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
KS ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
OR1M1   10000 perm   2 sec   (6502 perm/sec)   p_kst 8.224000e-01   p_cons 4.348000e-01   p_joint 9.119000e-01

Outputting figure to mutsig2_images.part000000000120/OR1M1.7_945_10000_0.8224_0.4348_0.9119.png
                gene_name: OR1M1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 34 percent done.
OR2A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
KS ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
OR2A12   10000 perm   1 sec   (6934 perm/sec)   p_kst 8.423000e-01   p_cons 4.296000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR2A12.7_936_10000_0.8423_0.4296_1.png
                gene_name: OR2A12
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
OR2A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
Cons ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
KS ci ratio: 1.853496e-02	ci left: 8.095843e-01	ci right 8.248305e-01	k: 8173	n:10000
OR2A25   10000 perm   1 sec   (6845 perm/sec)   p_kst 8.173000e-01   p_cons 6.338000e-01   p_joint 9.077000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A25.7_936_10000_0.8173_0.6338_0.9077.png
                gene_name: OR2A25
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 37 percent done.
OR10C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
OR10C1   10000 perm   2 sec   (6290 perm/sec)   p_kst 1.732000e-01   p_cons 8.538000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000120/OR10C1.6_942_10000_0.1732_0.8538_0.4303.png
                gene_name: OR10C1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
OR10K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.896750e-02	ci left: 4.930507e-01	ci right 5.127476e-01	k: 5029	n:10000
Cons ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
OR10K1   10000 perm   1 sec   (6678 perm/sec)   p_kst 3.147000e-01   p_cons 7.870000e-01   p_joint 5.029000e-01

Outputting figure to mutsig2_images.part000000000120/OR10K1.6_944_10000_0.3147_0.787_0.5029.png
                gene_name: OR10K1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 39 percent done.
OR13C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
OR13C2   10000 perm   1 sec   (7005 perm/sec)   p_kst 4.820000e-02   p_cons 3.510000e-02   p_joint 4.900000e-02

Joint ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
Cons ci ratio: 1.479695e-01	ci left: 3.138665e-02	ci right 3.645004e-02	k: 677	n:20000
KS ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
OR13C2   20000 perm   3 sec   (6242 perm/sec)   p_kst 4.955000e-02   p_cons 3.385000e-02   p_joint 2.420000e-02

Joint ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
Cons ci ratio: 1.203893e-01	ci left: 3.207488e-02	ci right 3.621597e-02	k: 1023	n:30000
KS ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
OR13C2   30000 perm   5 sec   (5941 perm/sec)   p_kst 4.880000e-02   p_cons 3.410000e-02   p_joint 1.570000e-02

Joint ci ratio: 1.185648e-01	ci left: 2.502076e-02	ci right 2.819847e-02	k: 1063	n:40000
Cons ci ratio: 1.048317e-01	ci left: 3.200171e-02	ci right 3.556639e-02	k: 1350	n:40000
KS ci ratio: 8.563648e-02	ci left: 4.763949e-02	ci right 5.192617e-02	k: 1990	n:40000
OR13C2   40000 perm   7 sec   (5751 perm/sec)   p_kst 4.975000e-02   p_cons 3.375000e-02   p_joint 2.657500e-02

Joint ci ratio: 1.459611e-01	ci left: 1.318122e-02	ci right 1.527573e-02	k: 710	n:50000
Cons ci ratio: 9.797911e-02	ci left: 2.949811e-02	ci right 3.255666e-02	k: 1550	n:50000
KS ci ratio: 7.776611e-02	ci left: 4.647627e-02	ci right 5.025639e-02	k: 2417	n:50000
OR13C2   50000 perm   9 sec   (5578 perm/sec)   p_kst 4.834000e-02   p_cons 3.100000e-02   p_joint 1.420000e-02

Joint ci ratio: 1.215096e-01	ci left: 1.601305e-02	ci right 1.810071e-02	k: 1022	n:60000
Cons ci ratio: 8.624686e-02	ci left: 3.184602e-02	ci right 3.473269e-02	k: 1996	n:60000
KS ci ratio: 7.067880e-02	ci left: 4.704044e-02	ci right 5.050337e-02	k: 2925	n:60000
OR13C2   60000 perm   11 sec   (5443 perm/sec)   p_kst 4.875000e-02   p_cons 3.326667e-02   p_joint 1.703333e-02

Joint ci ratio: 1.168284e-01	ci left: 1.490306e-02	ci right 1.676596e-02	k: 1107	n:70000
Cons ci ratio: 7.965192e-02	ci left: 3.210919e-02	ci right 3.478681e-02	k: 2340	n:70000
KS ci ratio: 6.538225e-02	ci left: 4.724367e-02	ci right 5.045100e-02	k: 3418	n:70000
OR13C2   70000 perm   13 sec   (5322 perm/sec)   p_kst 4.882857e-02   p_cons 3.342857e-02   p_joint 1.581429e-02

Joint ci ratio: 1.025116e-01	ci left: 1.702905e-02	ci right 1.888115e-02	k: 1435	n:80000
Cons ci ratio: 7.750147e-02	ci left: 2.978524e-02	ci right 3.219893e-02	k: 2478	n:80000
KS ci ratio: 6.095831e-02	ci left: 4.764977e-02	ci right 5.065803e-02	k: 3931	n:80000
OR13C2   80000 perm   15 sec   (5212 perm/sec)   p_kst 4.913750e-02   p_cons 3.097500e-02   p_joint 1.793750e-02

Joint ci ratio: 9.417126e-02	ci left: 1.799863e-02	ci right 1.978813e-02	k: 1699	n:90000
Cons ci ratio: 7.305393e-02	ci left: 2.986634e-02	ci right 3.214179e-02	k: 2789	n:90000
KS ci ratio: 5.733928e-02	ci left: 4.794939e-02	ci right 5.079086e-02	k: 4442	n:90000
OR13C2   90000 perm   18 sec   (5106 perm/sec)   p_kst 4.935556e-02   p_cons 3.098889e-02   p_joint 1.887778e-02

Outputting figure to mutsig2_images.part000000000120/OR13C2.6_960_90000_0.049356_0.030989_0.018878.png
                gene_name: OR13C2
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 41 percent done.
OR13C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
Cons ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
KS ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
OR13C3   10000 perm   1 sec   (6831 perm/sec)   p_kst 3.985000e-01   p_cons 6.137000e-01   p_joint 5.259000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C3.6_1048_10000_0.3985_0.6137_0.5259.png
                gene_name: OR13C3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
OR13C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
OR13C4   10000 perm   1 sec   (6957 perm/sec)   p_kst 3.370000e-02   p_cons 5.748000e-01   p_joint 1.266000e-01

Joint ci ratio: 9.019006e-02	ci left: 8.239466e-02	ci right 9.022610e-02	k: 1725	n:20000
Cons ci ratio: 2.390953e-02	ci left: 5.664602e-01	ci right 5.802185e-01	k: 11467	n:20000
KS ci ratio: 1.506346e-01	ci left: 3.027829e-02	ci right 3.525876e-02	k: 654	n:20000
OR13C4   20000 perm   3 sec   (6121 perm/sec)   p_kst 3.270000e-02   p_cons 5.733500e-01   p_joint 8.625000e-02

Joint ci ratio: 7.034453e-02	ci left: 9.049083e-02	ci right 9.712141e-02	k: 2813	n:30000
Cons ci ratio: 1.948190e-02	ci left: 5.687480e-01	ci right 5.799709e-01	k: 17231	n:30000
KS ci ratio: 1.240748e-01	ci left: 3.019881e-02	ci right 3.422578e-02	k: 965	n:30000
OR13C4   30000 perm   5 sec   (5843 perm/sec)   p_kst 3.216667e-02   p_cons 5.743667e-01   p_joint 9.376667e-02

Joint ci ratio: 5.865291e-02	ci left: 9.749609e-02	ci right 1.034121e-01	k: 4017	n:40000
Cons ci ratio: 1.691919e-02	ci left: 5.681349e-01	ci right 5.778545e-01	k: 22920	n:40000
KS ci ratio: 1.081484e-01	ci left: 3.007766e-02	ci right 3.354074e-02	k: 1271	n:40000
OR13C4   40000 perm   7 sec   (5619 perm/sec)   p_kst 3.177500e-02   p_cons 5.730000e-01   p_joint 1.004250e-01

Joint ci ratio: 5.792793e-02	ci left: 8.146442e-02	ci right 8.634402e-02	k: 4194	n:50000
Cons ci ratio: 1.510094e-02	ci left: 5.696915e-01	ci right 5.783799e-01	k: 28702	n:50000
KS ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
OR13C4   50000 perm   9 sec   (5466 perm/sec)   p_kst 3.152000e-02   p_cons 5.740400e-01   p_joint 8.388000e-02

Outputting figure to mutsig2_images.part000000000120/OR13C4.6_959_50000_0.03152_0.57404_0.08388.png
                gene_name: OR13C4
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 43 percent done.
OR1N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
Cons ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
KS ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
OR1N2   10000 perm   1 sec   (6789 perm/sec)   p_kst 6.687000e-01   p_cons 9.121000e-01   p_joint 8.632000e-01

Outputting figure to mutsig2_images.part000000000120/OR1N2.6_996_10000_0.6687_0.9121_0.8632.png
                gene_name: OR1N2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 44 percent done.
OR1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
OR1S1   10000 perm   2 sec   (6598 perm/sec)   p_kst 8.144000e-01   p_cons 8.519000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1S1.6_981_10000_0.8144_0.8519_1.png
                gene_name: OR1S1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
OR10A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
Cons ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
KS ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
OR10A4   10000 perm   1 sec   (7493 perm/sec)   p_kst 6.091000e-01   p_cons 9.459000e-01   p_joint 8.948000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A4.5_952_10000_0.6091_0.9459_0.8948.png
                gene_name: OR10A4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 47 percent done.
OR10J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
OR10J1   10000 perm   1 sec   (7486 perm/sec)   p_kst 8.278000e-01   p_cons 9.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10J1.5_967_10000_0.8278_0.9746_1.png
                gene_name: OR10J1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
OR10S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
OR10S1   10000 perm   1 sec   (6995 perm/sec)   p_kst 1.250000e-01   p_cons 3.140000e-02   p_joint 3.620000e-02

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
KS ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
OR10S1   20000 perm   3 sec   (6266 perm/sec)   p_kst 1.210500e-01   p_cons 2.985000e-02   p_joint 3.675000e-02

Joint ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
Cons ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
KS ci ratio: 6.089398e-02	ci left: 1.176587e-01	ci right 1.250815e-01	k: 3640	n:30000
OR10S1   30000 perm   5 sec   (5972 perm/sec)   p_kst 1.213333e-01   p_cons 2.800000e-02   p_joint 2.486667e-02

Joint ci ratio: 1.045517e-01	ci left: 3.217228e-02	ci right 3.574580e-02	k: 1357	n:40000
Cons ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
KS ci ratio: 5.140489e-02	ci left: 1.236527e-01	ci right 1.302016e-01	k: 5076	n:40000
OR10S1   40000 perm   7 sec   (5762 perm/sec)   p_kst 1.269000e-01   p_cons 2.792500e-02   p_joint 3.392500e-02

Joint ci ratio: 8.537205e-02	ci left: 3.873007e-02	ci right 4.220354e-02	k: 2022	n:50000
Cons ci ratio: 1.037082e-01	ci left: 2.633748e-02	ci right 2.923770e-02	k: 1388	n:50000
KS ci ratio: 4.587561e-02	ci left: 1.244892e-01	ci right 1.303541e-01	k: 6370	n:50000
OR10S1   50000 perm   9 sec   (5597 perm/sec)   p_kst 1.274000e-01   p_cons 2.776000e-02   p_joint 4.044000e-02

Joint ci ratio: 8.499993e-02	ci left: 3.277634e-02	ci right 3.570227e-02	k: 2053	n:60000
Cons ci ratio: 9.216592e-02	ci left: 2.791617e-02	ci right 3.062962e-02	k: 1755	n:60000
KS ci ratio: 4.194523e-02	ci left: 1.243950e-01	ci right 1.297411e-01	k: 7623	n:60000
OR10S1   60000 perm   11 sec   (5458 perm/sec)   p_kst 1.270500e-01   p_cons 2.925000e-02   p_joint 3.421667e-02

Outputting figure to mutsig2_images.part000000000120/OR10S1.5_1000_60000_0.12705_0.02925_0.034217.png
                gene_name: OR10S1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 49 percent done.
OR10V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
Cons ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
KS ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
OR10V1   10000 perm   1 sec   (7544 perm/sec)   p_kst 7.396000e-01   p_cons 8.798000e-01   p_joint 9.182000e-01

Outputting figure to mutsig2_images.part000000000120/OR10V1.5_934_10000_0.7396_0.8798_0.9182.png
                gene_name: OR10V1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 51 percent done.
OR10W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
Cons ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
OR10W1   10000 perm   2 sec   (6581 perm/sec)   p_kst 6.706000e-01   p_cons 6.467000e-01   p_joint 8.559000e-01

Outputting figure to mutsig2_images.part000000000120/OR10W1.5_922_10000_0.6706_0.6467_0.8559.png
                gene_name: OR10W1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 52 percent done.
OR13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.679846e-02	ci left: 5.216617e-01	ci right 5.413200e-01	k: 5315	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
OR13A1   10000 perm   2 sec   (6554 perm/sec)   p_kst 5.271000e-01   p_cons 3.499000e-01   p_joint 5.315000e-01

Outputting figure to mutsig2_images.part000000000120/OR13A1.5_991_10000_0.5271_0.3499_0.5315.png
                gene_name: OR13A1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
OR13C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
OR13C8   10000 perm   1 sec   (7125 perm/sec)   p_kst 6.529000e-01   p_cons 8.315000e-01   p_joint 8.630000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C8.5_966_10000_0.6529_0.8315_0.863.png
                gene_name: OR13C8
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 54 percent done.
OR1J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
OR1J2   10000 perm   1 sec   (6971 perm/sec)   p_kst 2.268000e-01   p_cons 8.943000e-01   p_joint 3.906000e-01

Outputting figure to mutsig2_images.part000000000120/OR1J2.5_945_10000_0.2268_0.8943_0.3906.png
                gene_name: OR1J2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 56 percent done.
OR1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
KS ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
OR1L3   10000 perm   1 sec   (6833 perm/sec)   p_kst 2.417000e-01   p_cons 5.314000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L3.5_978_10000_0.2417_0.5314_0.4576.png
                gene_name: OR1L3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 57 percent done.
OR1Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
OR1Q1   10000 perm   1 sec   (7377 perm/sec)   p_kst 9.181000e-01   p_cons 7.400000e-02   p_joint 2.991000e-01

Joint ci ratio: 5.159835e-02	ci left: 2.181382e-01	ci right 2.297421e-01	k: 4478	n:20000
Cons ci ratio: 9.917709e-02	ci left: 6.884579e-02	ci right 7.607910e-02	k: 1448	n:20000
KS ci ratio: 8.313467e-03	ci left: 9.136010e-01	ci right 9.212771e-01	k: 18350	n:20000
OR1Q1   20000 perm   3 sec   (6512 perm/sec)   p_kst 9.175000e-01   p_cons 7.240000e-02   p_joint 2.239000e-01

Outputting figure to mutsig2_images.part000000000120/OR1Q1.5_947_20000_0.9175_0.0724_0.2239.png
                gene_name: OR1Q1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 58 percent done.
OR10A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
KS ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
OR10A3   10000 perm   1 sec   (6903 perm/sec)   p_kst 7.019000e-01   p_cons 7.910000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10A3.4_948_10000_0.7019_0.791_1.png
                gene_name: OR10A3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
OR10A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
OR10A6   10000 perm   1 sec   (7027 perm/sec)   p_kst 1.500000e-03   p_cons 4.492000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
Cons ci ratio: 3.066311e-02	ci left: 4.427384e-01	ci right 4.565762e-01	k: 8993	n:20000
KS ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
OR10A6   20000 perm   3 sec   (6224 perm/sec)   p_kst 1.500000e-03   p_cons 4.496500e-01   p_joint 2.460000e-02

Joint ci ratio: 1.774827e-01	ci left: 1.457862e-02	ci right 1.744955e-02	k: 479	n:30000
Cons ci ratio: 2.508008e-02	ci left: 4.431603e-01	ci right 4.544496e-01	k: 13464	n:30000
KS ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
OR10A6   30000 perm   5 sec   (5925 perm/sec)   p_kst 1.600000e-03   p_cons 4.488000e-01   p_joint 1.596667e-02

Joint ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
Cons ci ratio: 2.169178e-02	ci left: 4.445665e-01	ci right 4.543408e-01	k: 17978	n:40000
KS ci ratio: 4.974483e-01	ci left: 1.166699e-03	ci right 1.958501e-03	k: 61	n:40000
OR10A6   40000 perm   7 sec   (5741 perm/sec)   p_kst 1.525000e-03   p_cons 4.494500e-01   p_joint 1.315000e-02

Joint ci ratio: 1.982322e-01	ci left: 6.990537e-03	ci right 8.547429e-03	k: 387	n:50000
Cons ci ratio: 1.999976e-02	ci left: 4.301291e-01	ci right 4.388385e-01	k: 21724	n:50000
KS ci ratio: 4.681969e-01	ci left: 1.073876e-03	ci right 1.746158e-03	k: 69	n:50000
OR10A6   50000 perm   9 sec   (5594 perm/sec)   p_kst 1.380000e-03   p_cons 4.344800e-01   p_joint 7.740000e-03

Joint ci ratio: 2.142160e-01	ci left: 4.955465e-03	ci right 6.159787e-03	k: 332	n:60000
Cons ci ratio: 1.831799e-02	ci left: 4.288805e-01	ci right 4.368260e-01	k: 25971	n:60000
KS ci ratio: 4.274040e-01	ci left: 1.101963e-03	ci right 1.714565e-03	k: 83	n:60000
OR10A6   60000 perm   11 sec   (5464 perm/sec)   p_kst 1.383333e-03   p_cons 4.328500e-01   p_joint 5.533333e-03

Joint ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
Cons ci ratio: 1.698418e-02	ci left: 4.284546e-01	ci right 4.358082e-01	k: 30249	n:70000
KS ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
OR10A6   70000 perm   13 sec   (5352 perm/sec)   p_kst 1.414286e-03   p_cons 4.321286e-01   p_joint 5.557143e-03

Joint ci ratio: 1.969986e-01	ci left: 4.439786e-03	ci right 5.421645e-03	k: 393	n:80000
Cons ci ratio: 1.586356e-02	ci left: 4.294254e-01	ci right 4.363045e-01	k: 34629	n:80000
KS ci ratio: 3.787048e-01	ci left: 1.084925e-03	ci right 1.602327e-03	k: 106	n:80000
OR10A6   80000 perm   15 sec   (5244 perm/sec)   p_kst 1.325000e-03   p_cons 4.328625e-01   p_joint 4.912500e-03

Joint ci ratio: 1.866335e-01	ci left: 4.422474e-03	ci right 5.343217e-03	k: 438	n:90000
Cons ci ratio: 1.496028e-02	ci left: 4.294931e-01	ci right 4.359779e-01	k: 38946	n:90000
KS ci ratio: 3.576048e-01	ci left: 1.095470e-03	ci right 1.582030e-03	k: 119	n:90000
OR10A6   90000 perm   17 sec   (5144 perm/sec)   p_kst 1.322222e-03   p_cons 4.327333e-01   p_joint 4.866667e-03

Joint ci ratio: 1.570689e-01	ci left: 5.703636e-03	ci right 6.685337e-03	k: 618	n:100000
Cons ci ratio: 1.423063e-02	ci left: 4.283473e-01	ci right 4.344966e-01	k: 43142	n:100000
KS ci ratio: 3.409652e-01	ci left: 1.095400e-03	ci right 1.554310e-03	k: 131	n:100000
OR10A6   100000 perm   20 sec   (5040 perm/sec)   p_kst 1.310000e-03   p_cons 4.314200e-01   p_joint 6.180000e-03

Joint ci ratio: 1.893327e-01	ci left: 3.514271e-03	ci right 4.257717e-03	k: 426	n:110000
Cons ci ratio: 1.357322e-02	ci left: 4.283161e-01	ci right 4.341785e-01	k: 47437	n:110000
KS ci ratio: 3.096763e-01	ci left: 1.229638e-03	ci right 1.688203e-03	k: 159	n:110000
OR10A6   110000 perm   22 sec   (4944 perm/sec)   p_kst 1.445455e-03   p_cons 4.312455e-01   p_joint 3.872727e-03

Joint ci ratio: 1.976654e-01	ci left: 2.943784e-03	ci right 3.597252e-03	k: 391	n:120000
Cons ci ratio: 1.300255e-02	ci left: 4.281707e-01	ci right 4.337827e-01	k: 51717	n:120000
KS ci ratio: 2.978159e-01	ci left: 1.227248e-03	ci right 1.664083e-03	k: 172	n:120000
OR10A6   120000 perm   25 sec   (4856 perm/sec)   p_kst 1.433333e-03   p_cons 4.309750e-01   p_joint 3.258333e-03

Joint ci ratio: 1.393088e-01	ci left: 5.631952e-03	ci right 6.482616e-03	k: 786	n:130000
Cons ci ratio: 1.248634e-02	ci left: 4.285210e-01	ci right 4.339129e-01	k: 56058	n:130000
KS ci ratio: 2.805053e-01	ci left: 1.289818e-03	ci right 1.717529e-03	k: 194	n:130000
OR10A6   130000 perm   27 sec   (4771 perm/sec)   p_kst 1.492308e-03   p_cons 4.312154e-01   p_joint 6.046154e-03

Joint ci ratio: 1.387201e-01	ci left: 5.277863e-03	ci right 6.071393e-03	k: 793	n:140000
Cons ci ratio: 1.205200e-02	ci left: 4.278114e-01	ci right 4.330058e-01	k: 60257	n:140000
KS ci ratio: 2.665154e-01	ci left: 1.337413e-03	ci right 1.755097e-03	k: 215	n:140000
OR10A6   140000 perm   30 sec   (4687 perm/sec)   p_kst 1.535714e-03   p_cons 4.304071e-01   p_joint 5.664286e-03

Joint ci ratio: 1.075417e-01	ci left: 8.307591e-03	ci right 9.258209e-03	k: 1316	n:150000
Cons ci ratio: 1.163845e-02	ci left: 4.281055e-01	ci right 4.331238e-01	k: 64592	n:150000
KS ci ratio: 2.566074e-01	ci left: 1.354158e-03	ci right 1.758834e-03	k: 232	n:150000
OR10A6   150000 perm   33 sec   (4603 perm/sec)   p_kst 1.546667e-03   p_cons 4.306133e-01   p_joint 8.773333e-03

Joint ci ratio: 1.225292e-01	ci left: 5.966625e-03	ci right 6.751424e-03	k: 1016	n:160000
Cons ci ratio: 1.125671e-02	ci left: 4.287153e-01	ci right 4.335747e-01	k: 68983	n:160000
KS ci ratio: 2.512763e-01	ci left: 1.328044e-03	ci right 1.715380e-03	k: 242	n:160000
OR10A6   160000 perm   35 sec   (4522 perm/sec)   p_kst 1.512500e-03   p_cons 4.311437e-01   p_joint 6.350000e-03

Joint ci ratio: 1.219506e-01	ci left: 5.672619e-03	ci right 6.414967e-03	k: 1026	n:170000
Cons ci ratio: 1.092094e-02	ci left: 4.287735e-01	ci right 4.334877e-01	k: 73292	n:170000
KS ci ratio: 2.424549e-01	ci left: 1.349259e-03	ci right 1.726891e-03	k: 260	n:170000
OR10A6   170000 perm   38 sec   (4442 perm/sec)   p_kst 1.529412e-03   p_cons 4.311294e-01   p_joint 6.035294e-03

Joint ci ratio: 9.547784e-02	ci left: 8.834589e-03	ci right 9.725768e-03	k: 1669	n:180000
Cons ci ratio: 1.061689e-02	ci left: 4.286717e-01	ci right 4.332527e-01	k: 77573	n:180000
KS ci ratio: 2.375046e-01	ci left: 1.331736e-03	ci right 1.695733e-03	k: 271	n:180000
OR10A6   180000 perm   41 sec   (4371 perm/sec)   p_kst 1.505556e-03   p_cons 4.309611e-01   p_joint 9.272222e-03

Joint ci ratio: 9.330005e-02	ci left: 8.775572e-03	ci right 9.639502e-03	k: 1748	n:190000
Cons ci ratio: 1.032770e-02	ci left: 4.290189e-01	ci right 4.334779e-01	k: 81937	n:190000
KS ci ratio: 2.292237e-01	ci left: 1.360758e-03	ci right 1.717886e-03	k: 291	n:190000
OR10A6   190000 perm   44 sec   (4297 perm/sec)   p_kst 1.531579e-03   p_cons 4.312474e-01   p_joint 9.200000e-03

Joint ci ratio: 9.345659e-02	ci left: 8.312284e-03	ci right 9.132050e-03	k: 1743	n:200000
Cons ci ratio: 1.006123e-02	ci left: 4.293179e-01	ci right 4.336641e-01	k: 86298	n:200000
KS ci ratio: 2.228281e-01	ci left: 1.372909e-03	ci right 1.721794e-03	k: 308	n:200000
OR10A6   200000 perm   47 sec   (4229 perm/sec)   p_kst 1.540000e-03   p_cons 4.314900e-01   p_joint 8.715000e-03

Joint ci ratio: 9.161399e-02	ci left: 8.246719e-03	ci right 9.043123e-03	k: 1814	n:210000
Cons ci ratio: 9.817888e-03	ci left: 4.294136e-01	ci right 4.336550e-01	k: 90622	n:210000
KS ci ratio: 2.182850e-01	ci left: 1.366017e-03	ci right 1.705124e-03	k: 321	n:210000
OR10A6   210000 perm   50 sec   (4164 perm/sec)   p_kst 1.528571e-03   p_cons 4.315333e-01   p_joint 8.638095e-03

Joint ci ratio: 9.077869e-02	ci left: 8.022847e-03	ci right 8.790190e-03	k: 1848	n:220000
Cons ci ratio: 9.584820e-03	ci left: 4.298379e-01	ci right 4.339821e-01	k: 95020	n:220000
KS ci ratio: 2.140089e-01	ci left: 1.359817e-03	ci right 1.689904e-03	k: 334	n:220000
OR10A6   220000 perm   54 sec   (4102 perm/sec)   p_kst 1.518182e-03   p_cons 4.319091e-01   p_joint 8.400000e-03

Joint ci ratio: 9.198134e-02	ci left: 7.474252e-03	ci right 8.199103e-03	k: 1801	n:230000
Cons ci ratio: 9.378553e-03	ci left: 4.296527e-01	ci right 4.337055e-01	k: 99286	n:230000
KS ci ratio: 2.105815e-01	ci left: 1.345977e-03	ci right 1.666796e-03	k: 345	n:230000
OR10A6   230000 perm   57 sec   (4040 perm/sec)   p_kst 1.500000e-03   p_cons 4.316783e-01   p_joint 7.830435e-03

Joint ci ratio: 1.038280e-01	ci left: 5.597500e-03	ci right 6.214525e-03	k: 1416	n:240000
Cons ci ratio: 8.915239e-03	ci left: 4.441598e-01	ci right 4.481415e-01	k: 107076	n:240000
KS ci ratio: 2.047450e-01	ci left: 1.368897e-03	ci right 1.685004e-03	k: 365	n:240000
OR10A6   240000 perm   60 sec   (3980 perm/sec)   p_kst 1.520833e-03   p_cons 4.461500e-01   p_joint 5.900000e-03

Joint ci ratio: 1.045852e-01	ci left: 5.295642e-03	ci right 5.883910e-03	k: 1396	n:250000
Cons ci ratio: 8.726461e-03	ci left: 4.446899e-01	ci right 4.485914e-01	k: 111660	n:250000
KS ci ratio: 2.017376e-01	ci left: 1.355901e-03	ci right 1.663842e-03	k: 376	n:250000
OR10A6   250000 perm   64 sec   (3921 perm/sec)   p_kst 1.504000e-03   p_cons 4.466400e-01   p_joint 5.584000e-03

Joint ci ratio: 1.042221e-01	ci left: 5.129397e-03	ci right 5.697098e-03	k: 1406	n:260000
Cons ci ratio: 8.558959e-03	ci left: 4.446147e-01	ci right 4.484403e-01	k: 116097	n:260000
KS ci ratio: 1.991161e-01	ci left: 1.340281e-03	ci right 1.640239e-03	k: 386	n:260000
OR10A6   260000 perm   67 sec   (3864 perm/sec)   p_kst 1.484615e-03   p_cons 4.465269e-01   p_joint 5.407692e-03

Joint ci ratio: 8.779401e-02	ci left: 7.007708e-03	ci right 7.654786e-03	k: 1978	n:270000
Cons ci ratio: 8.397788e-03	ci left: 4.447198e-01	ci right 4.484739e-01	k: 120581	n:270000
KS ci ratio: 1.963466e-01	ci left: 1.329364e-03	ci right 1.622245e-03	k: 397	n:270000
OR10A6   270000 perm   71 sec   (3808 perm/sec)   p_kst 1.470370e-03   p_cons 4.465963e-01   p_joint 7.325926e-03

Joint ci ratio: 8.686022e-02	ci left: 6.907635e-03	ci right 7.538343e-03	k: 2021	n:280000
Cons ci ratio: 8.248668e-03	ci left: 4.446217e-01	ci right 4.483080e-01	k: 125010	n:280000
KS ci ratio: 1.922822e-01	ci left: 1.339648e-03	ci right 1.627971e-03	k: 414	n:280000
OR10A6   280000 perm   75 sec   (3757 perm/sec)   p_kst 1.478571e-03   p_cons 4.464643e-01   p_joint 7.217857e-03

Joint ci ratio: 8.678472e-02	ci left: 6.682901e-03	ci right 7.292531e-03	k: 2025	n:290000
Cons ci ratio: 8.103827e-03	ci left: 4.447377e-01	ci right 4.483599e-01	k: 129499	n:290000
KS ci ratio: 1.888987e-01	ci left: 1.342710e-03	ci right 1.626023e-03	k: 429	n:290000
OR10A6   290000 perm   78 sec   (3705 perm/sec)   p_kst 1.479310e-03   p_cons 4.465483e-01   p_joint 6.982759e-03

Joint ci ratio: 8.532322e-02	ci left: 6.688450e-03	ci right 7.287800e-03	k: 2095	n:300000
Cons ci ratio: 7.968345e-03	ci left: 4.447233e-01	ci right 4.482844e-01	k: 133951	n:300000
KS ci ratio: 1.858969e-01	ci left: 1.342430e-03	ci right 1.620676e-03	k: 443	n:300000
OR10A6   300000 perm   82 sec   (3655 perm/sec)   p_kst 1.476667e-03   p_cons 4.465033e-01   p_joint 6.983333e-03

Joint ci ratio: 8.422736e-02	ci left: 6.646345e-03	ci right 7.233897e-03	k: 2150	n:310000
Cons ci ratio: 7.841433e-03	ci left: 4.445844e-01	ci right 4.480875e-01	k: 138364	n:310000
KS ci ratio: 1.834355e-01	ci left: 1.336046e-03	ci right 1.608894e-03	k: 455	n:310000
OR10A6   310000 perm   86 sec   (3605 perm/sec)   p_kst 1.467742e-03   p_cons 4.463355e-01   p_joint 6.935484e-03

Joint ci ratio: 8.404011e-02	ci left: 6.469215e-03	ci right 7.039773e-03	k: 2160	n:320000
Cons ci ratio: 7.719568e-03	ci left: 4.445078e-01	ci right 4.479556e-01	k: 142794	n:320000
KS ci ratio: 1.804908e-01	ci left: 1.339035e-03	ci right 1.607623e-03	k: 470	n:320000
OR10A6   320000 perm   90 sec   (3558 perm/sec)   p_kst 1.468750e-03   p_cons 4.462313e-01   p_joint 6.750000e-03

Joint ci ratio: 7.947525e-02	ci left: 7.027227e-03	ci right 7.611778e-03	k: 2414	n:330000
Cons ci ratio: 7.601068e-03	ci left: 4.445756e-01	ci right 4.479708e-01	k: 147270	n:330000
KS ci ratio: 1.771369e-01	ci left: 1.350563e-03	ci right 1.615891e-03	k: 488	n:330000
OR10A6   330000 perm   94 sec   (3513 perm/sec)   p_kst 1.478788e-03   p_cons 4.462727e-01   p_joint 7.315152e-03

Joint ci ratio: 7.818993e-02	ci left: 7.051203e-03	ci right 7.627830e-03	k: 2494	n:340000
Cons ci ratio: 7.486660e-03	ci left: 4.447192e-01	ci right 4.480641e-01	k: 151773	n:340000
KS ci ratio: 1.719373e-01	ci left: 1.395224e-03	ci right 1.660447e-03	k: 518	n:340000
OR10A6   340000 perm   98 sec   (3469 perm/sec)   p_kst 1.523529e-03   p_cons 4.463912e-01   p_joint 7.335294e-03

Joint ci ratio: 8.383072e-02	ci left: 5.948210e-03	ci right 6.471445e-03	k: 2172	n:350000
Cons ci ratio: 7.595665e-03	ci left: 4.304894e-01	ci right 4.337746e-01	k: 151246	n:350000
KS ci ratio: 1.696645e-01	ci left: 1.393651e-03	ci right 1.654714e-03	k: 532	n:350000
OR10A6   350000 perm   102 sec   (3427 perm/sec)   p_kst 1.520000e-03   p_cons 4.321314e-01   p_joint 6.205714e-03

Joint ci ratio: 8.309111e-02	ci left: 5.889047e-03	ci right 6.402285e-03	k: 2211	n:360000
Cons ci ratio: 7.489611e-03	ci left: 4.305004e-01	ci right 4.337396e-01	k: 155563	n:360000
KS ci ratio: 1.673264e-01	ci left: 1.394848e-03	ci right 1.652172e-03	k: 547	n:360000
OR10A6   360000 perm   106 sec   (3386 perm/sec)   p_kst 1.519444e-03   p_cons 4.321194e-01   p_joint 6.141667e-03

Joint ci ratio: 8.240752e-02	ci left: 5.827806e-03	ci right 6.331328e-03	k: 2248	n:370000
Cons ci ratio: 7.388082e-03	ci left: 4.304976e-01	ci right 4.336926e-01	k: 159875	n:370000
KS ci ratio: 1.649357e-01	ci left: 1.398595e-03	ci right 1.652558e-03	k: 563	n:370000
OR10A6   370000 perm   111 sec   (3345 perm/sec)   p_kst 1.521622e-03   p_cons 4.320946e-01   p_joint 6.075676e-03

Joint ci ratio: 8.398757e-02	ci left: 5.460523e-03	ci right 5.941799e-03	k: 2165	n:380000
Cons ci ratio: 7.289127e-03	ci left: 4.305926e-01	ci right 4.337453e-01	k: 164224	n:380000
KS ci ratio: 1.630676e-01	ci left: 1.394596e-03	ci right 1.644683e-03	k: 576	n:380000
OR10A6   380000 perm   115 sec   (3306 perm/sec)   p_kst 1.515789e-03   p_cons 4.321684e-01   p_joint 5.697368e-03

Joint ci ratio: 8.368350e-02	ci left: 5.360663e-03	ci right 5.831344e-03	k: 2181	n:390000
Cons ci ratio: 7.192991e-03	ci left: 4.307547e-01	ci right 4.338668e-01	k: 168601	n:390000
KS ci ratio: 1.607168e-01	ci left: 1.400661e-03	ci right 1.647865e-03	k: 593	n:390000
OR10A6   390000 perm   119 sec   (3267 perm/sec)   p_kst 1.520513e-03   p_cons 4.323103e-01   p_joint 5.592308e-03

Joint ci ratio: 8.411683e-02	ci left: 5.172780e-03	ci right 5.629430e-03	k: 2159	n:400000
Cons ci ratio: 7.102153e-03	ci left: 4.307990e-01	ci right 4.338720e-01	k: 172934	n:400000
KS ci ratio: 1.589869e-01	ci left: 1.396845e-03	ci right 1.640468e-03	k: 606	n:400000
OR10A6   400000 perm   124 sec   (3228 perm/sec)   p_kst 1.515000e-03   p_cons 4.323350e-01   p_joint 5.397500e-03

Joint ci ratio: 8.357954e-02	ci left: 5.113468e-03	ci right 5.561859e-03	k: 2187	n:410000
Cons ci ratio: 7.013799e-03	ci left: 4.309023e-01	ci right 4.339376e-01	k: 177292	n:410000
KS ci ratio: 1.570582e-01	ci left: 1.397914e-03	ci right 1.638487e-03	k: 621	n:410000
OR10A6   410000 perm   128 sec   (3191 perm/sec)   p_kst 1.514634e-03   p_cons 4.324195e-01   p_joint 5.334146e-03

Joint ci ratio: 7.717859e-02	ci left: 5.869074e-03	ci right 6.342540e-03	k: 2563	n:420000
Cons ci ratio: 6.931958e-03	ci left: 4.307677e-01	ci right 4.337665e-01	k: 181552	n:420000
KS ci ratio: 1.556884e-01	ci left: 1.389795e-03	ci right 1.626691e-03	k: 632	n:420000
OR10A6   420000 perm   133 sec   (3156 perm/sec)   p_kst 1.504762e-03   p_cons 4.322667e-01   p_joint 6.102381e-03

Joint ci ratio: 7.652630e-02	ci left: 5.832939e-03	ci right 6.299336e-03	k: 2607	n:430000
Cons ci ratio: 6.848565e-03	ci left: 4.309511e-01	ci right 4.339149e-01	k: 185946	n:430000
KS ci ratio: 1.568115e-01	ci left: 1.337360e-03	ci right 1.567117e-03	k: 623	n:430000
OR10A6   430000 perm   138 sec   (3120 perm/sec)   p_kst 1.448837e-03   p_cons 4.324326e-01   p_joint 6.062791e-03

Joint ci ratio: 7.576104e-02	ci left: 5.818531e-03	ci right 6.278919e-03	k: 2660	n:440000
Cons ci ratio: 6.770429e-03	ci left: 4.309582e-01	ci right 4.338881e-01	k: 190266	n:440000
KS ci ratio: 1.549600e-01	ci left: 1.339726e-03	ci right 1.566920e-03	k: 638	n:440000
OR10A6   440000 perm   143 sec   (3086 perm/sec)   p_kst 1.450000e-03   p_cons 4.324227e-01   p_joint 6.045455e-03

Joint ci ratio: 7.212081e-02	ci left: 6.286920e-03	ci right 6.759467e-03	k: 2934	n:450000
Cons ci ratio: 6.500277e-03	ci left: 4.454955e-01	ci right 4.484030e-01	k: 201127	n:450000
KS ci ratio: 1.524737e-01	ci left: 1.354827e-03	ci right 1.580559e-03	k: 659	n:450000
OR10A6   450000 perm   147 sec   (3053 perm/sec)   p_kst 1.464444e-03   p_cons 4.469489e-01   p_joint 6.520000e-03

Joint ci ratio: 7.133525e-02	ci left: 6.289018e-03	ci right 6.756360e-03	k: 2999	n:460000
Cons ci ratio: 6.430068e-03	ci left: 4.454473e-01	ci right 4.483229e-01	k: 205567	n:460000
KS ci ratio: 1.507700e-01	ci left: 1.356746e-03	ci right 1.580044e-03	k: 674	n:460000
OR10A6   460000 perm   152 sec   (3020 perm/sec)   p_kst 1.465217e-03   p_cons 4.468848e-01   p_joint 6.519565e-03

Joint ci ratio: 7.131631e-02	ci left: 6.159374e-03	ci right 6.616956e-03	k: 3001	n:470000
Cons ci ratio: 6.360525e-03	ci left: 4.455226e-01	ci right 4.483674e-01	k: 210064	n:470000
KS ci ratio: 1.483703e-01	ci left: 1.372937e-03	ci right 1.594984e-03	k: 696	n:470000
OR10A6   470000 perm   157 sec   (2988 perm/sec)   p_kst 1.480851e-03   p_cons 4.469447e-01   p_joint 6.385106e-03

Joint ci ratio: 6.741956e-02	ci left: 6.757886e-03	ci right 7.231428e-03	k: 3356	n:480000
Cons ci ratio: 6.294225e-03	ci left: 4.455136e-01	ci right 4.483287e-01	k: 214522	n:480000
KS ci ratio: 1.496684e-01	ci left: 1.320263e-03	ci right 1.535827e-03	k: 684	n:480000
OR10A6   480000 perm   162 sec   (2957 perm/sec)   p_kst 1.425000e-03   p_cons 4.469208e-01   p_joint 6.991667e-03

Joint ci ratio: 6.721306e-02	ci left: 6.662094e-03	ci right 7.127438e-03	k: 3377	n:490000
Cons ci ratio: 6.230110e-03	ci left: 4.454930e-01	ci right 4.482791e-01	k: 218974	n:490000
KS ci ratio: 1.486956e-01	ci left: 1.311001e-03	ci right 1.523536e-03	k: 693	n:490000
OR10A6   490000 perm   167 sec   (2926 perm/sec)   p_kst 1.414286e-03   p_cons 4.468857e-01   p_joint 6.891837e-03

Joint ci ratio: 6.649810e-02	ci left: 6.672413e-03	ci right 7.133329e-03	k: 3450	n:500000
Cons ci ratio: 6.166269e-03	ci left: 4.456052e-01	ci right 4.483634e-01	k: 223492	n:500000
KS ci ratio: 1.462899e-01	ci left: 1.329084e-03	ci right 1.540761e-03	k: 716	n:500000
OR10A6   500000 perm   173 sec   (2896 perm/sec)   p_kst 1.432000e-03   p_cons 4.469840e-01   p_joint 6.900000e-03

Joint ci ratio: 6.733265e-02	ci left: 6.379599e-03	ci right 6.826034e-03	k: 3366	n:510000
Cons ci ratio: 6.104084e-03	ci left: 4.457348e-01	ci right 4.484658e-01	k: 228021	n:510000
KS ci ratio: 1.443887e-01	ci left: 1.338924e-03	ci right 1.549158e-03	k: 735	n:510000
OR10A6   510000 perm   178 sec   (2866 perm/sec)   p_kst 1.441176e-03   p_cons 4.471000e-01   p_joint 6.600000e-03

Joint ci ratio: 6.691815e-02	ci left: 6.336323e-03	ci right 6.776894e-03	k: 3408	n:520000
Cons ci ratio: 6.044683e-03	ci left: 4.457826e-01	ci right 4.484872e-01	k: 232510	n:520000
KS ci ratio: 1.426543e-01	ci left: 1.346548e-03	ci right 1.555223e-03	k: 753	n:520000
OR10A6   520000 perm   183 sec   (2837 perm/sec)   p_kst 1.448077e-03   p_cons 4.471346e-01   p_joint 6.553846e-03

Joint ci ratio: 6.641439e-02	ci left: 6.313245e-03	ci right 6.748779e-03	k: 3460	n:530000
Cons ci ratio: 5.987988e-03	ci left: 4.457457e-01	ci right 4.484247e-01	k: 236955	n:530000
KS ci ratio: 1.412561e-01	ci left: 1.348439e-03	ci right 1.555186e-03	k: 768	n:530000
OR10A6   530000 perm   189 sec   (2807 perm/sec)   p_kst 1.449057e-03   p_cons 4.470849e-01   p_joint 6.528302e-03

Joint ci ratio: 5.856707e-02	ci left: 7.986734e-03	ci right 8.470416e-03	k: 4442	n:540000
Cons ci ratio: 5.933504e-03	ci left: 4.456566e-01	ci right 4.483106e-01	k: 241371	n:540000
KS ci ratio: 1.395422e-01	ci left: 1.357417e-03	ci right 1.562806e-03	k: 787	n:540000
OR10A6   540000 perm   194 sec   (2777 perm/sec)   p_kst 1.457407e-03   p_cons 4.469833e-01   p_joint 8.225926e-03

Joint ci ratio: 5.838630e-02	ci left: 7.891674e-03	ci right 8.368075e-03	k: 4470	n:550000
Cons ci ratio: 5.878232e-03	ci left: 4.457599e-01	ci right 4.483897e-01	k: 245891	n:550000
KS ci ratio: 1.380606e-01	ci left: 1.362573e-03	ci right 1.566373e-03	k: 804	n:550000
OR10A6   550000 perm   200 sec   (2747 perm/sec)   p_kst 1.461818e-03   p_cons 4.470745e-01   p_joint 8.127273e-03

Joint ci ratio: 5.480331e-02	ci left: 8.805381e-03	ci right 9.303290e-03	k: 5069	n:560000
Cons ci ratio: 5.824748e-03	ci left: 4.458365e-01	ci right 4.484427e-01	k: 250398	n:560000
KS ci ratio: 1.365420e-01	ci left: 1.369280e-03	ci right 1.571648e-03	k: 822	n:560000
OR10A6   560000 perm   206 sec   (2719 perm/sec)   p_kst 1.467857e-03   p_cons 4.471393e-01   p_joint 9.051786e-03

Joint ci ratio: 5.448871e-02	ci left: 8.752989e-03	ci right 9.245004e-03	k: 5128	n:570000
Cons ci ratio: 5.772945e-03	ci left: 4.458893e-01	ci right 4.484726e-01	k: 254893	n:570000
KS ci ratio: 1.350725e-01	ci left: 1.375764e-03	ci right 1.576726e-03	k: 840	n:570000
OR10A6   570000 perm   212 sec   (2692 perm/sec)   p_kst 1.473684e-03   p_cons 4.471807e-01   p_joint 8.996491e-03

Joint ci ratio: 5.447691e-02	ci left: 8.607159e-03	ci right 9.090869e-03	k: 5131	n:580000
Cons ci ratio: 5.722778e-03	ci left: 4.459164e-01	ci right 4.484773e-01	k: 259374	n:580000
KS ci ratio: 1.335716e-01	ci left: 1.383702e-03	ci right 1.583399e-03	k: 859	n:580000
OR10A6   580000 perm   218 sec   (2667 perm/sec)   p_kst 1.481034e-03   p_cons 4.471966e-01   p_joint 8.846552e-03

Joint ci ratio: 5.440089e-02	ci left: 8.486339e-03	ci right 8.962572e-03	k: 5146	n:590000
Cons ci ratio: 5.673100e-03	ci left: 4.460121e-01	ci right 4.485512e-01	k: 263896	n:590000
KS ci ratio: 1.327259e-01	ci left: 1.378273e-03	ci right 1.575827e-03	k: 870	n:590000
OR10A6   590000 perm   223 sec   (2641 perm/sec)   p_kst 1.474576e-03   p_cons 4.472814e-01   p_joint 8.722034e-03

Joint ci ratio: 5.468961e-02	ci left: 8.257745e-03	ci right 8.723686e-03	k: 5093	n:600000
Cons ci ratio: 5.624864e-03	ci left: 4.460896e-01	ci right 4.486075e-01	k: 268409	n:600000
KS ci ratio: 1.320461e-01	ci left: 1.369804e-03	ci right 1.565060e-03	k: 879	n:600000
OR10A6   600000 perm   229 sec   (2616 perm/sec)   p_kst 1.465000e-03   p_cons 4.473483e-01   p_joint 8.488333e-03

Joint ci ratio: 5.551250e-02	ci left: 7.883049e-03	ci right 8.334756e-03	k: 4945	n:610000
Cons ci ratio: 5.578559e-03	ci left: 4.461009e-01	ci right 4.485980e-01	k: 272883	n:610000
KS ci ratio: 1.312289e-01	ci left: 1.364787e-03	ci right 1.558030e-03	k: 890	n:610000
OR10A6   610000 perm   235 sec   (2592 perm/sec)   p_kst 1.459016e-03   p_cons 4.473492e-01   p_joint 8.106557e-03

Joint ci ratio: 5.560690e-02	ci left: 7.730439e-03	ci right 8.174177e-03	k: 4929	n:620000
Cons ci ratio: 5.534065e-03	ci left: 4.460505e-01	ci right 4.485274e-01	k: 277319	n:620000
KS ci ratio: 1.302100e-01	ci left: 1.364617e-03	ci right 1.556219e-03	k: 904	n:620000
OR10A6   620000 perm   241 sec   (2568 perm/sec)   p_kst 1.458065e-03   p_cons 4.472887e-01   p_joint 7.950000e-03

Joint ci ratio: 5.507255e-02	ci left: 7.758009e-03	ci right 8.198915e-03	k: 5025	n:630000
Cons ci ratio: 5.489173e-03	ci left: 4.461320e-01	ci right 4.485892e-01	k: 281837	n:630000
KS ci ratio: 1.288638e-01	ci left: 1.372138e-03	ci right 1.562653e-03	k: 923	n:630000
OR10A6   630000 perm   248 sec   (2544 perm/sec)   p_kst 1.465079e-03   p_cons 4.473603e-01   p_joint 7.976190e-03

Joint ci ratio: 5.498237e-02	ci left: 7.662977e-03	ci right 8.097746e-03	k: 5042	n:640000
Cons ci ratio: 5.446182e-03	ci left: 4.461360e-01	ci right 4.485739e-01	k: 286307	n:640000
KS ci ratio: 1.282414e-01	ci left: 1.364308e-03	ci right 1.552751e-03	k: 932	n:640000
OR10A6   640000 perm   254 sec   (2521 perm/sec)   p_kst 1.456250e-03   p_cons 4.473547e-01   p_joint 7.878125e-03

Joint ci ratio: 5.453524e-02	ci left: 7.671030e-03	ci right 8.102605e-03	k: 5125	n:650000
Cons ci ratio: 5.403530e-03	ci left: 4.461999e-01	ci right 4.486190e-01	k: 290816	n:650000
KS ci ratio: 1.273573e-01	ci left: 1.362679e-03	ci right 1.549502e-03	k: 945	n:650000
OR10A6   650000 perm   260 sec   (2498 perm/sec)   p_kst 1.453846e-03   p_cons 4.474092e-01   p_joint 7.884615e-03

Joint ci ratio: 5.429883e-02	ci left: 7.622051e-03	ci right 8.048953e-03	k: 5170	n:660000
Cons ci ratio: 5.362095e-03	ci left: 4.462408e-01	ci right 4.486415e-01	k: 295311	n:660000
KS ci ratio: 1.268894e-01	ci left: 1.352301e-03	ci right 1.536968e-03	k: 952	n:660000
OR10A6   660000 perm   266 sec   (2477 perm/sec)   p_kst 1.442424e-03   p_cons 4.474409e-01   p_joint 7.833333e-03

Joint ci ratio: 5.493729e-02	ci left: 7.334545e-03	ci right 7.750327e-03	k: 5052	n:670000
Cons ci ratio: 5.322016e-03	ci left: 4.462417e-01	ci right 4.486244e-01	k: 299780	n:670000
KS ci ratio: 1.262293e-01	ci left: 1.346570e-03	ci right 1.529426e-03	k: 962	n:670000
OR10A6   670000 perm   273 sec   (2455 perm/sec)   p_kst 1.435821e-03   p_cons 4.474328e-01   p_joint 7.540299e-03

Joint ci ratio: 5.490206e-02	ci left: 7.236827e-03	ci right 7.646798e-03	k: 5059	n:680000
Cons ci ratio: 5.282602e-03	ci left: 4.462633e-01	ci right 4.486284e-01	k: 304263	n:680000
KS ci ratio: 1.251934e-01	ci left: 1.349557e-03	ci right 1.531204e-03	k: 978	n:680000
OR10A6   680000 perm   279 sec   (2434 perm/sec)   p_kst 1.438235e-03   p_cons 4.474456e-01   p_joint 7.439706e-03

Joint ci ratio: 5.485592e-02	ci left: 7.144800e-03	ci right 7.549207e-03	k: 5068	n:690000
Cons ci ratio: 5.246235e-03	ci left: 4.460785e-01	ci right 4.484263e-01	k: 308604	n:690000
KS ci ratio: 1.287326e-01	ci left: 1.255622e-03	ci right 1.429768e-03	k: 925	n:690000
OR10A6   690000 perm   286 sec   (2412 perm/sec)   p_kst 1.340580e-03   p_cons 4.472522e-01   p_joint 7.344928e-03

Joint ci ratio: 5.451858e-02	ci left: 7.131500e-03	ci right 7.532594e-03	k: 5131	n:700000
Cons ci ratio: 5.209463e-03	ci left: 4.460076e-01	ci right 4.483385e-01	k: 313021	n:700000
KS ci ratio: 1.278384e-01	ci left: 1.255660e-03	ci right 1.428509e-03	k: 938	n:700000
OR10A6   700000 perm   293 sec   (2391 perm/sec)   p_kst 1.340000e-03   p_cons 4.471729e-01   p_joint 7.330000e-03

Joint ci ratio: 5.412446e-02	ci left: 7.135256e-03	ci right 7.533569e-03	k: 5206	n:710000
Cons ci ratio: 5.172878e-03	ci left: 4.459937e-01	ci right 4.483081e-01	k: 317477	n:710000
KS ci ratio: 1.267628e-01	ci left: 1.259792e-03	ci right 1.431642e-03	k: 954	n:710000
OR10A6   710000 perm   300 sec   (2370 perm/sec)   p_kst 1.343662e-03   p_cons 4.471507e-01   p_joint 7.332394e-03

Joint ci ratio: 5.368248e-02	ci left: 7.153991e-03	ci right 7.549988e-03	k: 5292	n:720000
Cons ci ratio: 5.137357e-03	ci left: 4.459511e-01	ci right 4.482493e-01	k: 321912	n:720000
KS ci ratio: 1.257787e-01	ci left: 1.262470e-03	ci right 1.433249e-03	k: 969	n:720000
OR10A6   720000 perm   306 sec   (2349 perm/sec)   p_kst 1.345833e-03   p_cons 4.471000e-01   p_joint 7.350000e-03

Joint ci ratio: 5.330609e-02	ci left: 7.157357e-03	ci right 7.550677e-03	k: 5367	n:730000
Cons ci ratio: 5.102572e-03	ci left: 4.459083e-01	ci right 4.481907e-01	k: 326346	n:730000
KS ci ratio: 1.247538e-01	ci left: 1.266407e-03	ci right 1.436219e-03	k: 985	n:730000
OR10A6   730000 perm   313 sec   (2329 perm/sec)   p_kst 1.349315e-03   p_cons 4.470493e-01   p_joint 7.352055e-03

Joint ci ratio: 5.322891e-02	ci left: 7.081962e-03	ci right 7.470558e-03	k: 5383	n:740000
Cons ci ratio: 5.067486e-03	ci left: 4.459640e-01	ci right 4.482310e-01	k: 330852	n:740000
KS ci ratio: 1.241887e-01	ci left: 1.261077e-03	ci right 1.429352e-03	k: 994	n:740000
OR10A6   740000 perm   320 sec   (2309 perm/sec)   p_kst 1.343243e-03   p_cons 4.470973e-01   p_joint 7.274324e-03

Joint ci ratio: 5.285704e-02	ci left: 7.087526e-03	ci right 7.473628e-03	k: 5459	n:750000
Cons ci ratio: 5.032897e-03	ci left: 4.460396e-01	ci right 4.482915e-01	k: 335374	n:750000
KS ci ratio: 1.233241e-01	ci left: 1.262352e-03	ci right 1.429538e-03	k: 1008	n:750000
OR10A6   750000 perm   327 sec   (2291 perm/sec)   p_kst 1.344000e-03   p_cons 4.471653e-01   p_joint 7.278667e-03

Joint ci ratio: 5.389325e-02	ci left: 6.726800e-03	ci right 7.100657e-03	k: 5253	n:760000
Cons ci ratio: 4.999552e-03	ci left: 4.460594e-01	ci right 4.482963e-01	k: 339855	n:760000
KS ci ratio: 1.224773e-01	ci left: 1.263596e-03	ci right 1.429715e-03	k: 1022	n:760000
OR10A6   760000 perm   335 sec   (2272 perm/sec)   p_kst 1.344737e-03   p_cons 4.471776e-01   p_joint 6.911842e-03

Joint ci ratio: 5.412958e-02	ci left: 6.581774e-03	ci right 6.949225e-03	k: 5208	n:770000
Cons ci ratio: 4.966782e-03	ci left: 4.460864e-01	ci right 4.483088e-01	k: 344342	n:770000
KS ci ratio: 1.210645e-01	ci left: 1.277406e-03	ci right 1.443265e-03	k: 1046	n:770000
OR10A6   770000 perm   342 sec   (2253 perm/sec)   p_kst 1.358442e-03   p_cons 4.471974e-01   p_joint 6.763636e-03

Joint ci ratio: 5.377967e-02	ci left: 6.583395e-03	ci right 6.948487e-03	k: 5276	n:780000
Cons ci ratio: 4.935660e-03	ci left: 4.460116e-01	ci right 4.482196e-01	k: 348750	n:780000
KS ci ratio: 1.199804e-01	ci left: 1.284654e-03	ci right 1.449854e-03	k: 1065	n:780000
OR10A6   780000 perm   349 sec   (2235 perm/sec)   p_kst 1.365385e-03   p_cons 4.471154e-01   p_joint 6.764103e-03

Joint ci ratio: 5.009569e-02	ci left: 7.498420e-03	ci right 7.884950e-03	k: 6075	n:790000
Cons ci ratio: 4.904626e-03	ci left: 4.459880e-01	ci right 4.481820e-01	k: 353197	n:790000
KS ci ratio: 1.192555e-01	ci left: 1.284356e-03	ci right 1.448449e-03	k: 1078	n:790000
OR10A6   790000 perm   356 sec   (2217 perm/sec)   p_kst 1.364557e-03   p_cons 4.470848e-01   p_joint 7.689873e-03

Joint ci ratio: 5.047194e-02	ci left: 7.294819e-03	ci right 7.673760e-03	k: 5986	n:800000
Cons ci ratio: 4.873763e-03	ci left: 4.460063e-01	ci right 4.481866e-01	k: 357677	n:800000
KS ci ratio: 1.182727e-01	ci left: 1.290133e-03	ci right 1.453512e-03	k: 1096	n:800000
OR10A6   800000 perm   364 sec   (2199 perm/sec)   p_kst 1.370000e-03   p_cons 4.470962e-01   p_joint 7.482500e-03

Joint ci ratio: 5.007558e-02	ci left: 7.320572e-03	ci right 7.697778e-03	k: 6081	n:810000
Cons ci ratio: 4.844661e-03	ci left: 4.459033e-01	ci right 4.480700e-01	k: 362059	n:810000
KS ci ratio: 1.172612e-01	ci left: 1.296972e-03	ci right 1.459714e-03	k: 1115	n:810000
OR10A6   810000 perm   371 sec   (2182 perm/sec)   p_kst 1.376543e-03   p_cons 4.469864e-01   p_joint 7.507407e-03

Joint ci ratio: 4.714755e-02	ci left: 8.162612e-03	ci right 8.557946e-03	k: 6854	n:820000
Cons ci ratio: 4.814553e-03	ci left: 4.459588e-01	ci right 4.481123e-01	k: 366569	n:820000
KS ci ratio: 1.164809e-01	ci left: 1.298913e-03	ci right 1.460740e-03	k: 1130	n:820000
OR10A6   820000 perm   379 sec   (2165 perm/sec)   p_kst 1.378049e-03   p_cons 4.470354e-01   p_joint 8.358537e-03

Joint ci ratio: 4.690563e-02	ci left: 8.148802e-03	ci right 8.541388e-03	k: 6925	n:830000
Cons ci ratio: 4.785478e-03	ci left: 4.459637e-01	ci right 4.481041e-01	k: 371038	n:830000
KS ci ratio: 1.156150e-01	ci left: 1.303151e-03	ci right 1.464217e-03	k: 1147	n:830000
OR10A6   830000 perm   387 sec   (2147 perm/sec)   p_kst 1.381928e-03   p_cons 4.470337e-01   p_joint 8.343373e-03

Joint ci ratio: 4.656349e-02	ci left: 8.171804e-03	ci right 8.562550e-03	k: 7027	n:840000
Cons ci ratio: 4.756625e-03	ci left: 4.459994e-01	ci right 4.481271e-01	k: 375533	n:840000
KS ci ratio: 1.147682e-01	ci left: 1.307292e-03	ci right 1.467606e-03	k: 1164	n:840000
OR10A6   840000 perm   394 sec   (2131 perm/sec)   p_kst 1.385714e-03   p_cons 4.470631e-01   p_joint 8.365476e-03

Joint ci ratio: 4.650911e-02	ci left: 8.095425e-03	ci right 8.482054e-03	k: 7044	n:850000
Cons ci ratio: 4.728974e-03	ci left: 4.459626e-01	ci right 4.480777e-01	k: 379967	n:850000
KS ci ratio: 1.139880e-01	ci left: 1.310198e-03	ci right 1.469702e-03	k: 1180	n:850000
OR10A6   850000 perm   402 sec   (2114 perm/sec)   p_kst 1.388235e-03   p_cons 4.470200e-01   p_joint 8.287059e-03

Joint ci ratio: 4.670224e-02	ci left: 7.935771e-03	ci right 8.316391e-03	k: 6987	n:860000
Cons ci ratio: 4.700673e-03	ci left: 4.460453e-01	ci right 4.481481e-01	k: 384503	n:860000
KS ci ratio: 1.133658e-01	ci left: 1.309649e-03	ci right 1.468158e-03	k: 1193	n:860000
OR10A6   860000 perm   410 sec   (2097 perm/sec)   p_kst 1.387209e-03   p_cons 4.470965e-01   p_joint 8.124419e-03

Joint ci ratio: 4.705530e-02	ci left: 7.727532e-03	ci right 8.101042e-03	k: 6884	n:870000
Cons ci ratio: 4.673351e-03	ci left: 4.460755e-01	ci right 4.481662e-01	k: 388995	n:870000
KS ci ratio: 1.123351e-01	ci left: 1.319170e-03	ci right 1.477283e-03	k: 1215	n:870000
OR10A6   870000 perm   418 sec   (2081 perm/sec)   p_kst 1.396552e-03   p_cons 4.471207e-01   p_joint 7.912644e-03

Joint ci ratio: 4.722711e-02	ci left: 7.584681e-03	ci right 7.952661e-03	k: 6835	n:880000
Cons ci ratio: 4.647920e-03	ci left: 4.459540e-01	ci right 4.480327e-01	k: 393354	n:880000
KS ci ratio: 1.116031e-01	ci left: 1.321852e-03	ci right 1.479187e-03	k: 1231	n:880000
OR10A6   880000 perm   426 sec   (2066 perm/sec)   p_kst 1.398864e-03   p_cons 4.469932e-01   p_joint 7.767045e-03

Joint ci ratio: 4.751014e-02	ci left: 7.410621e-03	ci right 7.772370e-03	k: 6755	n:890000
Cons ci ratio: 4.622007e-03	ci left: 4.459307e-01	ci right 4.479977e-01	k: 397798	n:890000
KS ci ratio: 1.112429e-01	ci left: 1.315738e-03	ci right 1.471806e-03	k: 1239	n:890000
OR10A6   890000 perm   434 sec   (2051 perm/sec)   p_kst 1.392135e-03   p_cons 4.469640e-01   p_joint 7.589888e-03

Joint ci ratio: 4.728352e-02	ci left: 7.399646e-03	ci right 7.759089e-03	k: 6820	n:900000
Cons ci ratio: 4.597184e-03	ci left: 4.458369e-01	ci right 4.478923e-01	k: 402178	n:900000
KS ci ratio: 1.107973e-01	ci left: 1.311921e-03	ci right 1.466872e-03	k: 1249	n:900000
OR10A6   900000 perm   442 sec   (2037 perm/sec)   p_kst 1.387778e-03   p_cons 4.468644e-01   p_joint 7.577778e-03

Joint ci ratio: 4.945776e-02	ci left: 6.686441e-03	ci right 7.026600e-03	k: 6238	n:910000
Cons ci ratio: 4.571526e-03	ci left: 4.458781e-01	ci right 4.479222e-01	k: 406679	n:910000
KS ci ratio: 1.101383e-01	ci left: 1.313532e-03	ci right 1.467692e-03	k: 1264	n:910000
OR10A6   910000 perm   450 sec   (2021 perm/sec)   p_kst 1.389011e-03   p_cons 4.469000e-01   p_joint 6.854945e-03

Joint ci ratio: 4.517968e-02	ci left: 7.932893e-03	ci right 8.300649e-03	k: 7466	n:920000
Cons ci ratio: 4.546883e-03	ci left: 4.458544e-01	ci right 4.478873e-01	k: 411121	n:920000
KS ci ratio: 1.095339e-01	ci left: 1.314054e-03	ci right 1.467374e-03	k: 1278	n:920000
OR10A6   920000 perm   459 sec   (2005 perm/sec)   p_kst 1.389130e-03   p_cons 4.468707e-01   p_joint 8.115217e-03

Joint ci ratio: 4.384300e-02	ci left: 8.335687e-03	ci right 8.710395e-03	k: 7925	n:930000
Cons ci ratio: 4.522418e-03	ci left: 4.458548e-01	ci right 4.478767e-01	k: 415585	n:930000
KS ci ratio: 1.089815e-01	ci left: 1.313521e-03	ci right 1.465956e-03	k: 1291	n:930000
OR10A6   930000 perm   467 sec   (1991 perm/sec)   p_kst 1.388172e-03   p_cons 4.468656e-01   p_joint 8.521505e-03

Joint ci ratio: 4.330549e-02	ci left: 8.454312e-03	ci right 8.829577e-03	k: 8122	n:940000
Cons ci ratio: 4.499302e-03	ci left: 4.457499e-01	ci right 4.477610e-01	k: 419950	n:940000
KS ci ratio: 1.083542e-01	ci left: 1.315071e-03	ci right 1.466752e-03	k: 1306	n:940000
OR10A6   940000 perm   476 sec   (1977 perm/sec)   p_kst 1.389362e-03   p_cons 4.467553e-01   p_joint 8.640426e-03

Joint ci ratio: 4.310190e-02	ci left: 8.445495e-03	ci right 8.818563e-03	k: 8199	n:950000
Cons ci ratio: 4.476088e-03	ci left: 4.456968e-01	ci right 4.476972e-01	k: 424362	n:950000
KS ci ratio: 1.080245e-01	ci left: 1.309421e-03	ci right 1.459961e-03	k: 1314	n:950000
OR10A6   950000 perm   484 sec   (1962 perm/sec)   p_kst 1.383158e-03   p_cons 4.466968e-01   p_joint 8.630526e-03

Joint ci ratio: 4.288810e-02	ci left: 8.442019e-03	ci right 8.813038e-03	k: 8281	n:960000
Cons ci ratio: 4.453558e-03	ci left: 4.456083e-01	ci right 4.475983e-01	k: 428739	n:960000
KS ci ratio: 1.072924e-01	ci left: 1.314027e-03	ci right 1.464008e-03	k: 1332	n:960000
OR10A6   960000 perm   493 sec   (1948 perm/sec)   p_kst 1.387500e-03   p_cons 4.466031e-01   p_joint 8.626042e-03

Joint ci ratio: 4.270319e-02	ci left: 8.428419e-03	ci right 8.797204e-03	k: 8353	n:970000
Cons ci ratio: 4.430552e-03	ci left: 4.456124e-01	ci right 4.475921e-01	k: 433204	n:970000
KS ci ratio: 1.068526e-01	ci left: 1.311516e-03	ci right 1.460559e-03	k: 1343	n:970000
OR10A6   970000 perm   501 sec   (1934 perm/sec)   p_kst 1.384536e-03   p_cons 4.466021e-01   p_joint 8.611340e-03

Joint ci ratio: 4.246478e-02	ci left: 8.437313e-03	ci right 8.804376e-03	k: 8447	n:980000
Cons ci ratio: 4.409063e-03	ci left: 4.454858e-01	ci right 4.474553e-01	k: 437541	n:980000
KS ci ratio: 1.063396e-01	ci left: 1.311045e-03	ci right 1.459274e-03	k: 1356	n:980000
OR10A6   980000 perm   510 sec   (1921 perm/sec)   p_kst 1.383673e-03   p_cons 4.464704e-01   p_joint 8.619388e-03

Joint ci ratio: 4.241856e-02	ci left: 8.371070e-03	ci right 8.734844e-03	k: 8466	n:990000
Cons ci ratio: 4.386575e-03	ci left: 4.455093e-01	ci right 4.474688e-01	k: 442024	n:990000
KS ci ratio: 1.057953e-01	ci left: 1.311569e-03	ci right 1.459050e-03	k: 1370	n:990000
OR10A6   990000 perm   519 sec   (1908 perm/sec)   p_kst 1.383838e-03   p_cons 4.464889e-01   p_joint 8.551515e-03

Joint ci ratio: 4.235234e-02	ci left: 8.314068e-03	ci right 8.674788e-03	k: 8493	n:1000000
Cons ci ratio: 4.364533e-03	ci left: 4.455203e-01	ci right 4.474700e-01	k: 446495	n:1000000
KS ci ratio: 1.053354e-01	ci left: 1.310136e-03	ci right 1.456776e-03	k: 1382	n:1000000
OR10A6   1000000 perm   528 sec   (1895 perm/sec)   p_kst 1.382000e-03   p_cons 4.464950e-01   p_joint 8.493000e-03

Joint ci ratio: 4.216928e-02	ci left: 8.304243e-03	ci right 8.662941e-03	k: 8567	n:1010000
Cons ci ratio: 4.343194e-03	ci left: 4.454886e-01	ci right 4.474286e-01	k: 450923	n:1010000
KS ci ratio: 1.048062e-01	ci left: 1.310662e-03	ci right 1.456578e-03	k: 1396	n:1010000
OR10A6   1010000 perm   537 sec   (1882 perm/sec)   p_kst 1.382178e-03   p_cons 4.464584e-01   p_joint 8.482178e-03

Joint ci ratio: 4.204258e-02	ci left: 8.273270e-03	ci right 8.629530e-03	k: 8619	n:1020000
Cons ci ratio: 4.322225e-03	ci left: 4.454506e-01	ci right 4.473811e-01	k: 455344	n:1020000
KS ci ratio: 1.045450e-01	ci left: 1.304495e-03	ci right 1.449341e-03	k: 1403	n:1020000
OR10A6   1020000 perm   546 sec   (1869 perm/sec)   p_kst 1.375490e-03   p_cons 4.464157e-01   p_joint 8.450000e-03

Joint ci ratio: 4.215294e-02	ci left: 8.150667e-03	ci right 8.502592e-03	k: 8575	n:1030000
Cons ci ratio: 4.301211e-03	ci left: 4.454532e-01	ci right 4.473743e-01	k: 459806	n:1030000
KS ci ratio: 1.039542e-01	ci left: 1.306959e-03	ci right 1.451208e-03	k: 1419	n:1030000
OR10A6   1030000 perm   555 sec   (1857 perm/sec)   p_kst 1.377670e-03   p_cons 4.464136e-01   p_joint 8.325243e-03

Joint ci ratio: 4.186277e-02	ci left: 8.185520e-03	ci right 8.536458e-03	k: 8694	n:1040000
Cons ci ratio: 4.280741e-03	ci left: 4.454279e-01	ci right 4.473397e-01	k: 464239	n:1040000
KS ci ratio: 1.033373e-01	ci left: 1.310314e-03	ci right 1.454024e-03	k: 1436	n:1040000
OR10A6   1040000 perm   564 sec   (1844 perm/sec)   p_kst 1.380769e-03   p_cons 4.463837e-01   p_joint 8.359615e-03

Joint ci ratio: 4.166679e-02	ci left: 8.184842e-03	ci right 8.534069e-03	k: 8776	n:1050000
Cons ci ratio: 4.260799e-03	ci left: 4.453755e-01	ci right 4.472781e-01	k: 468643	n:1050000
KS ci ratio: 1.027313e-01	ci left: 1.313609e-03	ci right 1.456784e-03	k: 1453	n:1050000
OR10A6   1050000 perm   573 sec   (1832 perm/sec)   p_kst 1.383810e-03   p_cons 4.463267e-01   p_joint 8.358095e-03

Joint ci ratio: 4.149953e-02	ci left: 8.173910e-03	ci right 8.521237e-03	k: 8847	n:1060000
Cons ci ratio: 4.240381e-03	ci left: 4.454118e-01	ci right 4.473055e-01	k: 473140	n:1060000
KS ci ratio: 1.023450e-01	ci left: 1.311327e-03	ci right 1.453684e-03	k: 1464	n:1060000
OR10A6   1060000 perm   583 sec   (1819 perm/sec)   p_kst 1.381132e-03   p_cons 4.463585e-01   p_joint 8.346226e-03

Joint ci ratio: 4.132492e-02	ci left: 8.166886e-03	ci right 8.512419e-03	k: 8922	n:1070000
Cons ci ratio: 4.220436e-03	ci left: 4.454260e-01	ci right 4.473108e-01	k: 477614	n:1070000
KS ci ratio: 1.017218e-01	ci left: 1.315465e-03	ci right 1.457349e-03	k: 1482	n:1070000
OR10A6   1070000 perm   592 sec   (1807 perm/sec)   p_kst 1.385047e-03   p_cons 4.463682e-01   p_joint 8.338318e-03

Joint ci ratio: 4.115019e-02	ci left: 8.160911e-03	ci right 8.504697e-03	k: 8998	n:1080000
Cons ci ratio: 4.200944e-03	ci left: 4.454195e-01	ci right 4.472956e-01	k: 482066	n:1080000
KS ci ratio: 1.010425e-01	ci left: 1.321334e-03	ci right 1.462843e-03	k: 1502	n:1080000
OR10A6   1080000 perm   601 sec   (1796 perm/sec)   p_kst 1.390741e-03   p_cons 4.463574e-01   p_joint 8.331481e-03

Joint ci ratio: 4.110344e-02	ci left: 8.105103e-03	ci right 8.446142e-03	k: 9019	n:1090000
Cons ci ratio: 4.182146e-03	ci left: 4.453628e-01	ci right 4.472302e-01	k: 486463	n:1090000
KS ci ratio: 1.006416e-01	ci left: 1.319943e-03	ci right 1.460709e-03	k: 1514	n:1090000
OR10A6   1090000 perm   611 sec   (1784 perm/sec)   p_kst 1.388991e-03   p_cons 4.462963e-01   p_joint 8.274312e-03

Joint ci ratio: 4.105226e-02	ci left: 8.052110e-03	ci right 8.390487e-03	k: 9042	n:1100000
Cons ci ratio: 4.163154e-03	ci left: 4.453598e-01	ci right 4.472187e-01	k: 490918	n:1100000
KS ci ratio: 1.004102e-01	ci left: 1.314147e-03	ci right 1.453954e-03	k: 1521	n:1100000
OR10A6   1100000 perm   621 sec   (1772 perm/sec)   p_kst 1.382727e-03   p_cons 4.462891e-01   p_joint 8.220000e-03

Joint ci ratio: 4.182061e-02	ci left: 7.688887e-03	ci right 8.018193e-03	k: 8716	n:1110000
Cons ci ratio: 4.144803e-03	ci left: 4.453110e-01	ci right 4.471614e-01	k: 495322	n:1110000
KS ci ratio: 9.982149e-02	ci left: 1.318118e-03	ci right 1.457477e-03	k: 1539	n:1110000
OR10A6   1110000 perm   631 sec   (1760 perm/sec)   p_kst 1.386486e-03   p_cons 4.462360e-01   p_joint 7.852252e-03

Outputting figure to mutsig2_images.part000000000120/OR10A6.4_948_1110000_0.0013865_0.44624_0.0078523.png
                gene_name: OR10A6
               theta_stop: 0.100 
                    nperm: 1110000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0080 

Current progress: 61 percent done.
OR10A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
Cons ci ratio: 5.735389e-02	ci left: 3.091742e-01	ci right 3.275318e-01	k: 3183	n:10000
KS ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
OR10A7   10000 perm   1 sec   (7305 perm/sec)   p_kst 6.009000e-01   p_cons 3.183000e-01   p_joint 4.919000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A7.4_954_10000_0.6009_0.3183_0.4919.png
                gene_name: OR10A7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 62 percent done.
OR10H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
Cons ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
KS ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
OR10H4   10000 perm   1 sec   (7390 perm/sec)   p_kst 6.780000e-02   p_cons 9.312000e-01   p_joint 2.316000e-01

Joint ci ratio: 5.368851e-02	ci left: 2.047686e-01	ci right 2.161157e-01	k: 4208	n:20000
Cons ci ratio: 7.415084e-03	ci left: 9.297025e-01	ci right 9.366709e-01	k: 18665	n:20000
KS ci ratio: 1.038504e-01	ci left: 6.303638e-02	ci right 6.999029e-02	k: 1329	n:20000
OR10H4   20000 perm   3 sec   (6569 perm/sec)   p_kst 6.645000e-02   p_cons 9.332500e-01   p_joint 2.104000e-01

Joint ci ratio: 4.581820e-02	ci left: 1.916200e-01	ci right 2.006389e-01	k: 5883	n:30000
Cons ci ratio: 6.537841e-03	ci left: 9.199255e-01	ci right 9.259923e-01	k: 27690	n:30000
KS ci ratio: 8.553125e-02	ci left: 6.262789e-02	ci right 6.825662e-02	k: 1962	n:30000
OR10H4   30000 perm   5 sec   (6255 perm/sec)   p_kst 6.540000e-02   p_cons 9.230000e-01   p_joint 1.961000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H4.4_954_30000_0.0654_0.923_0.1961.png
                gene_name: OR10H4
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 63 percent done.
OR11G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
OR11G2   10000 perm   1 sec   (7069 perm/sec)   p_kst 6.806000e-01   p_cons 1.380000e-02   p_joint 2.089000e-01

Joint ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
Cons ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
KS ci ratio: 1.928117e-02	ci left: 6.673532e-01	ci right 6.803962e-01	k: 13478	n:20000
OR11G2   20000 perm   3 sec   (6316 perm/sec)   p_kst 6.739000e-01   p_cons 1.215000e-02   p_joint 8.740000e-02

Joint ci ratio: 7.481667e-02	ci left: 8.068826e-02	ci right 8.699261e-02	k: 2514	n:30000
Cons ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
KS ci ratio: 1.609303e-02	ci left: 6.587900e-01	ci right 6.695115e-01	k: 19925	n:30000
OR11G2   30000 perm   5 sec   (5999 perm/sec)   p_kst 6.641667e-01   p_cons 1.223333e-02   p_joint 8.380000e-02

Joint ci ratio: 7.300868e-02	ci left: 6.476542e-02	ci right 6.969763e-02	k: 2688	n:40000
Cons ci ratio: 1.782199e-01	ci left: 1.088429e-02	ci right 1.303743e-02	k: 477	n:40000
KS ci ratio: 1.394070e-02	ci left: 6.593971e-01	ci right 6.686791e-01	k: 26562	n:40000
OR11G2   40000 perm   7 sec   (5763 perm/sec)   p_kst 6.640500e-01   p_cons 1.192500e-02   p_joint 6.720000e-02

Joint ci ratio: 6.710898e-02	ci left: 6.173224e-02	ci right 6.603856e-02	k: 3193	n:50000
Cons ci ratio: 1.555635e-01	ci left: 1.156377e-02	ci right 1.353343e-02	k: 626	n:50000
KS ci ratio: 1.183285e-02	ci left: 6.829147e-01	ci right 6.910636e-01	k: 34350	n:50000
OR11G2   50000 perm   9 sec   (5591 perm/sec)   p_kst 6.870000e-01   p_cons 1.252000e-02   p_joint 6.386000e-02

Joint ci ratio: 6.483079e-02	ci left: 5.556832e-02	ci right 5.930796e-02	k: 3445	n:60000
Cons ci ratio: 1.409137e-01	ci left: 1.183540e-02	ci right 1.364552e-02	k: 763	n:60000
KS ci ratio: 1.078473e-02	ci left: 6.839578e-01	ci right 6.913907e-01	k: 41261	n:60000
OR11G2   60000 perm   11 sec   (5456 perm/sec)   p_kst 6.876833e-01   p_cons 1.271667e-02   p_joint 5.741667e-02

Joint ci ratio: 5.345482e-02	ci left: 6.943261e-02	ci right 7.326015e-02	k: 4993	n:70000
Cons ci ratio: 1.294592e-01	ci left: 1.209098e-02	ci right 1.377832e-02	k: 904	n:70000
KS ci ratio: 9.996966e-03	ci left: 6.837076e-01	ci right 6.905912e-01	k: 48101	n:70000
OR11G2   70000 perm   13 sec   (5333 perm/sec)   p_kst 6.871571e-01   p_cons 1.291429e-02   p_joint 7.132857e-02

Joint ci ratio: 5.108752e-02	ci left: 6.679606e-02	ci right 7.031030e-02	k: 5483	n:80000
Cons ci ratio: 1.218937e-01	ci left: 1.198401e-02	ci right 1.355162e-02	k: 1020	n:80000
KS ci ratio: 9.325381e-03	ci left: 6.851274e-01	ci right 6.915589e-01	k: 55068	n:80000
OR11G2   80000 perm   15 sec   (5221 perm/sec)   p_kst 6.883500e-01   p_cons 1.275000e-02   p_joint 6.853750e-02

Joint ci ratio: 4.799688e-02	ci left: 6.734150e-02	ci right 7.066413e-02	k: 6209	n:90000
Cons ci ratio: 1.150558e-01	ci left: 1.200021e-02	ci right 1.347589e-02	k: 1145	n:90000
KS ci ratio: 8.794452e-03	ci left: 6.851955e-01	ci right 6.912591e-01	k: 61941	n:90000
OR11G2   90000 perm   18 sec   (5117 perm/sec)   p_kst 6.882333e-01   p_cons 1.272222e-02   p_joint 6.898889e-02

Joint ci ratio: 4.845794e-02	ci left: 5.992973e-02	ci right 6.291577e-02	k: 6141	n:100000
Cons ci ratio: 1.095152e-01	ci left: 1.195676e-02	ci right 1.335172e-02	k: 1264	n:100000
KS ci ratio: 8.352943e-03	ci left: 6.848473e-01	ci right 6.906018e-01	k: 68773	n:100000
OR11G2   100000 perm   20 sec   (5020 perm/sec)   p_kst 6.877300e-01   p_cons 1.264000e-02   p_joint 6.141000e-02

Joint ci ratio: 4.281205e-02	ci left: 6.930005e-02	ci right 7.234081e-02	k: 7789	n:110000
Cons ci ratio: 1.000488e-01	ci left: 1.307456e-02	ci right 1.446034e-02	k: 1513	n:110000
KS ci ratio: 7.952813e-03	ci left: 6.855989e-01	ci right 6.910821e-01	k: 75718	n:110000
OR11G2   110000 perm   22 sec   (4924 perm/sec)   p_kst 6.883455e-01   p_cons 1.375455e-02   p_joint 7.080909e-02

Joint ci ratio: 3.889884e-02	ci left: 7.650527e-02	ci right 7.954850e-02	k: 9362	n:120000
Cons ci ratio: 9.577874e-02	ci left: 1.310687e-02	ci right 1.443345e-02	k: 1651	n:120000
KS ci ratio: 7.607656e-03	ci left: 6.860882e-01	ci right 6.913360e-01	k: 82646	n:120000
OR11G2   120000 perm   25 sec   (4835 perm/sec)   p_kst 6.887167e-01   p_cons 1.375833e-02   p_joint 7.801667e-02

Outputting figure to mutsig2_images.part000000000120/OR11G2.4_1040_120000_0.68872_0.013758_0.078017.png
                gene_name: OR11G2
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.080 

Current progress: 65 percent done.
OR13C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
Cons ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
KS ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
OR13C9   10000 perm   1 sec   (6919 perm/sec)   p_kst 1.894000e-01   p_cons 2.425000e-01   p_joint 3.215000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C9.4_960_10000_0.1894_0.2425_0.3215.png
                gene_name: OR13C9
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 66 percent done.
OR13D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
Cons ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
OR13D1   10000 perm   1 sec   (6710 perm/sec)   p_kst 2.929000e-01   p_cons 4.602000e-01   p_joint 4.592000e-01

Outputting figure to mutsig2_images.part000000000120/OR13D1.4_1044_10000_0.2929_0.4602_0.4592.png
                gene_name: OR13D1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 67 percent done.
OR13F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
Cons ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
KS ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
OR13F1   10000 perm   1 sec   (7032 perm/sec)   p_kst 7.743000e-01   p_cons 5.527000e-01   p_joint 8.532000e-01

Outputting figure to mutsig2_images.part000000000120/OR13F1.4_962_10000_0.7743_0.5527_0.8532.png
                gene_name: OR13F1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 68 percent done.
OR13H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
OR13H1   10000 perm   1 sec   (6877 perm/sec)   p_kst 9.786000e-01   p_cons 2.516000e-01   p_joint 6.140000e-01

Outputting figure to mutsig2_images.part000000000120/OR13H1.4_930_10000_0.9786_0.2516_0.614.png
                gene_name: OR13H1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
OR1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
OR1A1   10000 perm   1 sec   (7081 perm/sec)   p_kst 2.301000e-01   p_cons 5.709000e-01   p_joint 3.669000e-01

Outputting figure to mutsig2_images.part000000000120/OR1A1.4_932_10000_0.2301_0.5709_0.3669.png
                gene_name: OR1A1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 71 percent done.
OR1J4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
Cons ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
KS ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
OR1J4   10000 perm   1 sec   (7234 perm/sec)   p_kst 1.203000e-01   p_cons 9.310000e-02   p_joint 8.380000e-02

Joint ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
Cons ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
KS ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
OR1J4   20000 perm   3 sec   (6462 perm/sec)   p_kst 1.175500e-01   p_cons 9.445000e-02   p_joint 8.730000e-02

Outputting figure to mutsig2_images.part000000000120/OR1J4.4_945_20000_0.11755_0.09445_0.0873.png
                gene_name: OR1J4
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 72 percent done.
OR1L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
Cons ci ratio: 2.245076e-02	ci left: 7.444244e-01	ci right 7.614280e-01	k: 7530	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
OR1L4   10000 perm   1 sec   (7429 perm/sec)   p_kst 2.709000e-01   p_cons 7.530000e-01   p_joint 3.913000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L4.4_940_10000_0.2709_0.753_0.3913.png
                gene_name: OR1L4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 73 percent done.
OR1L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
Cons ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
KS ci ratio: 1.335882e-02	ci left: 8.898512e-01	ci right 9.019170e-01	k: 8960	n:10000
OR1L8   10000 perm   1 sec   (7529 perm/sec)   p_kst 8.960000e-01   p_cons 3.305000e-01   p_joint 7.045000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L8.4_934_10000_0.896_0.3305_0.7045.png
                gene_name: OR1L8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 75 percent done.
OPTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
OPTN   10000 perm   1 sec   (6949 perm/sec)   p_kst 2.929000e-01   p_cons 3.868000e-01   p_joint 2.970000e-01

Outputting figure to mutsig2_images.part000000000120/OPTN.3_1786_10000_0.2929_0.3868_0.297.png
                gene_name: OPTN
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 76 percent done.
OR10G7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
Cons ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
KS ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
OR10G7   10000 perm   1 sec   (7154 perm/sec)   p_kst 2.604000e-01   p_cons 9.790000e-02   p_joint 9.300000e-02

Joint ci ratio: 5.087438e-02	ci left: 2.230427e-01	ci right 2.347363e-01	k: 4577	n:20000
Cons ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
KS ci ratio: 4.661705e-02	ci left: 2.550723e-01	ci right 2.672972e-01	k: 5223	n:20000
OR10G7   20000 perm   3 sec   (6430 perm/sec)   p_kst 2.611500e-01   p_cons 8.720000e-02   p_joint 2.288500e-01

Outputting figure to mutsig2_images.part000000000120/OR10G7.3_940_20000_0.26115_0.0872_0.22885.png
                gene_name: OR10G7
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 77 percent done.
OR10J5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
Cons ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
KS ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
OR10J5   10000 perm   1 sec   (7313 perm/sec)   p_kst 3.967000e-01   p_cons 8.953000e-01   p_joint 9.529000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J5.3_932_10000_0.3967_0.8953_0.9529.png
                gene_name: OR10J5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 78 percent done.
OR11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
Cons ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
KS ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
OR11A1   10000 perm   1 sec   (7510 perm/sec)   p_kst 4.664000e-01   p_cons 9.840000e-01   p_joint 6.879000e-01

Outputting figure to mutsig2_images.part000000000120/OR11A1.3_952_10000_0.4664_0.984_0.6879.png
                gene_name: OR11A1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 80 percent done.
OR11H12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
Cons ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
KS ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
OR11H12   10000 perm   1 sec   (7901 perm/sec)   p_kst 3.374000e-01   p_cons 5.732000e-01   p_joint 6.199000e-01

Outputting figure to mutsig2_images.part000000000120/OR11H12.3_983_10000_0.3374_0.5732_0.6199.png
                gene_name: OR11H12
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 81 percent done.
OR14J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
OR14J1   10000 perm   1 sec   (7322 perm/sec)   p_kst 3.250000e-01   p_cons 2.206000e-01   p_joint 2.819000e-01

Outputting figure to mutsig2_images.part000000000120/OR14J1.3_969_10000_0.325_0.2206_0.2819.png
                gene_name: OR14J1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 82 percent done.
OR1F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
Cons ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
OR1F1   10000 perm   1 sec   (7218 perm/sec)   p_kst 7.237000e-01   p_cons 6.067000e-01   p_joint 8.577000e-01

Outputting figure to mutsig2_images.part000000000120/OR1F1.3_942_10000_0.7237_0.6067_0.8577.png
                gene_name: OR1F1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 84 percent done.
OR1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
Cons ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
KS ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
OR1I1   10000 perm   1 sec   (7391 perm/sec)   p_kst 6.598000e-01   p_cons 3.871000e-01   p_joint 6.271000e-01

Outputting figure to mutsig2_images.part000000000120/OR1I1.3_1070_10000_0.6598_0.3871_0.6271.png
                gene_name: OR1I1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 85 percent done.
OR1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
OR1L1   10000 perm   1 sec   (7095 perm/sec)   p_kst 4.854000e-01   p_cons 9.087000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L1.3_935_10000_0.4854_0.9087_0.767.png
                gene_name: OR1L1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 86 percent done.
OR10G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
KS ci ratio: 6.275439e-03	ci left: 9.718541e-01	ci right 9.780650e-01	k: 9751	n:10000
OR10G3   10000 perm   1 sec   (7977 perm/sec)   p_kst 9.751000e-01   p_cons 7.329000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10G3.2_945_10000_0.9751_0.7329_1.png
                gene_name: OR10G3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
OR10H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.005892e-02	ci left: 7.844174e-01	ci right 8.004119e-01	k: 7925	n:10000
KS ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
OR10H1   10000 perm   1 sec   (7955 perm/sec)   p_kst 6.290000e-01   p_cons 7.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10H1.2_961_10000_0.629_0.7925_1.png
                gene_name: OR10H1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
OR10H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
Cons ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
KS ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
OR10H2   10000 perm   1 sec   (8003 perm/sec)   p_kst 8.488000e-01   p_cons 3.590000e-01   p_joint 4.524000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H2.2_952_10000_0.8488_0.359_0.4524.png
                gene_name: OR10H2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 90 percent done.
OR10H5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
Cons ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
OR10H5   10000 perm   1 sec   (7912 perm/sec)   p_kst 7.701000e-01   p_cons 3.765000e-01   p_joint 3.671000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H5.2_951_10000_0.7701_0.3765_0.3671.png
                gene_name: OR10H5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 91 percent done.
OR11H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
KS ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
OR11H1   10000 perm   1 sec   (7661 perm/sec)   p_kst 8.669000e-01   p_cons 7.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR11H1.2_983_10000_0.8669_0.7371_1.png
                gene_name: OR11H1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
OR11H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
Cons ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
OR11H6   10000 perm   1 sec   (8061 perm/sec)   p_kst 1.077000e-01   p_cons 9.831000e-01   p_joint 5.351000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.494611e-03	ci left: 9.825854e-01	ci right 9.860717e-01	k: 19688	n:20000
KS ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
OR11H6   20000 perm   3 sec   (7064 perm/sec)   p_kst 1.130000e-01   p_cons 9.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR11H6.2_996_20000_0.113_0.9844_1.png
                gene_name: OR11H6
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
OR1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
OR1B1   10000 perm   1 sec   (7800 perm/sec)   p_kst 3.411000e-01   p_cons 1.961000e-01   p_joint 2.089000e-01

Outputting figure to mutsig2_images.part000000000120/OR1B1.2_960_10000_0.3411_0.1961_0.2089.png
                gene_name: OR1B1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 95 percent done.
OR1E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
OR1E1   10000 perm   1 sec   (7836 perm/sec)   p_kst 7.535000e-01   p_cons 8.700000e-02   p_joint 1.399000e-01

Joint ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
Cons ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
KS ci ratio: 1.599253e-02	ci left: 7.441898e-01	ci right 7.562374e-01	k: 15005	n:20000
OR1E1   20000 perm   3 sec   (6880 perm/sec)   p_kst 7.502500e-01   p_cons 9.140000e-02   p_joint 1.191000e-01

Outputting figure to mutsig2_images.part000000000120/OR1E1.2_949_20000_0.75025_0.0914_0.1191.png
                gene_name: OR1E1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 96 percent done.
OR1K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
Cons ci ratio: 2.264985e-02	ci left: 7.410878e-01	ci right 7.581666e-01	k: 7497	n:10000
KS ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
OR1K1   10000 perm   1 sec   (7752 perm/sec)   p_kst 1.886000e-01   p_cons 7.497000e-01   p_joint 5.557000e-01

Outputting figure to mutsig2_images.part000000000120/OR1K1.2_954_10000_0.1886_0.7497_0.5557.png
                gene_name: OR1K1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 97 percent done.
OR1L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
Cons ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
OR1L6   10000 perm   1 sec   (7122 perm/sec)   p_kst 2.036000e-01   p_cons 9.102000e-01   p_joint 6.405000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L6.2_938_10000_0.2036_0.9102_0.6405.png
                gene_name: OR1L6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 99 percent done.
OR1N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
OR1N1   10000 perm   1 sec   (8044 perm/sec)   p_kst 5.242000e-01   p_cons 6.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1N1.2_940_10000_0.5242_0.6025_1.png
                gene_name: OR1N1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000120
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 120 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 4422261: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000121> was used as the working directory.
Started at Wed Oct 24 18:01:42 2012
Results reported at Wed Oct 24 19:08:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000121.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000121.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 121  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000121.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4115.94 sec.
    Max Memory :      5288 MB
    Max Swap   :      7871 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
121
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 121
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 121: processing genes 10857 - 10947
Calculating significance of each gene.
Using projection method.
10857	OR2A4	1
10858	OR2A42	1
10859	OR2A5	4.299179e-02
10860	OR2A7	3.138741e-01
10861	OR2AE1	2.984953e-01
10862	OR2AG1	1
10863	OR2AG2	3.724471e-02
10864	OR2AK2	1
10865	OR2AT4	8.092693e-01
10866	OR2B11	3.159648e-01
10867	OR2B2	1
10868	OR2B3	1
10869	OR2B6	2.225918e-02
10870	OR2C1	4.370498e-01
10871	OR2C3	1.042654e-01
10872	OR2D2	1
10873	OR2D3	1
10874	OR2F1	1
10875	OR2F2	2.416405e-01
10876	OR2G2	7.398186e-02
10877	OR2G3	4.378890e-03
10878	OR2G6	4.667644e-01
10879	OR2H1	9.876428e-02
10880	OR2H2	1
10881	OR2J2	6.591362e-01
10882	OR2J3	3.780638e-01
10883	OR2K2	1
10884	OR2L13	1
10885	OR2L2	3.432486e-04
10886	OR2L3	1.807230e-09
10887	OR2L8	3.077382e-07
In gene OR2M2 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1046    n = 1	mu =   7.03e-07
10888	OR2M2	1.916491e-01
10889	OR2M3	5.815611e-03
10890	OR2M4	1.947757e-04
10891	OR2M5	1
10892	OR2M7	3.680216e-05
10893	OR2S2	3.356172e-01
10894	OR2T1	1
10895	OR2T10	5.946288e-03
10896	OR2T11	3.585923e-01
10897	OR2T12	4.135896e-02
10898	OR2T2	1
10899	OR2T27	7.458174e-05
10900	OR2T29	1
10901	OR2T3	8.126985e-05
10902	OR2T33	9.266994e-02
10903	OR2T34	7.651981e-06
10904	OR2T4	1.018078e-08
10905	OR2T5	1
10906	OR2T6	3.414757e-01
10907	OR2T8	8.610050e-04
10908	OR2V2	4.614973e-01
10909	OR2W1	5.266717e-01
10910	OR2W3	3.978275e-01
10911	OR2W5	5.302908e-05
10912	OR2Y1	4.705555e-01
10913	OR2Z1	2.207100e-01
10914	OR3A1	4.534203e-01
10915	OR3A2	4.010670e-01
10916	OR3A3	2.498070e-01
10917	OR4A15	2.102047e-01
10918	OR4A16	2.612893e-02
10919	OR4A47	2.667355e-02
In gene OR4A5 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 952     n = 1	mu =   9.71e-07
10920	OR4A5	3.672589e-08
10921	OR4B1	6.514797e-01
10922	OR4C11	1.488535e-01
10923	OR4C12	7.256041e-04
10924	OR4C13	1
10925	OR4C15	2.154531e-06
10926	OR4C16	1.573202e-08
10927	OR4C3	5.243586e-03
10928	OR4C46	2.631413e-01
10929	OR4C6	6.838231e-01
10930	OR4D1	3.244896e-01
10931	OR4D10	8.560218e-04
10932	OR4D11	1.281014e-01
10933	OR4D2	1
10934	OR4D5	6.283377e-01
In gene OR4D6 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 948     n = 1	mu =   9.71e-07
10935	OR4D6	6.415693e-01
10936	OR4D9	1
10937	OR4E2	3.180826e-02
10938	OR4F15	2.641775e-01
10939	OR4F17	3.665553e-01
10940	OR4F4	1
10941	OR4F5	3.897732e-01
10942	OR4F6	3.198565e-01
10943	OR4K1	5.792165e-02
10944	OR4K13	6.118917e-03
10945	OR4K14	1
10946	OR4K15	6.545954e-01
10947	OR4K17	6.391809e-01
Done

Running MutSig 2:
Scatter job 121: processing genes 10857 - 10947
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR2M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
Cons ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
KS ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
OR2M3   10000 perm   2 sec   (4689 perm/sec)   p_kst 5.855000e-01   p_cons 4.381000e-01   p_joint 6.481000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M3.19_942_10000_0.5855_0.4381_0.6481.png
                gene_name: OR2M3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 1 percent done.
OR4A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
KS ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
OR4A15   10000 perm   2 sec   (5567 perm/sec)   p_kst 1.239000e-01   p_cons 3.781000e-01   p_joint 1.178000e-01

Joint ci ratio: 5.200245e-02	ci left: 2.154636e-01	ci right 2.270176e-01	k: 4424	n:20000
Cons ci ratio: 3.440898e-02	ci left: 3.867204e-01	ci right 4.003106e-01	k: 7870	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
OR4A15   20000 perm   4 sec   (4965 perm/sec)   p_kst 1.264000e-01   p_cons 3.935000e-01   p_joint 2.212000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A15.19_1038_20000_0.1264_0.3935_0.2212.png
                gene_name: OR4A15
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
OR4C15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
Cons ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
KS ci ratio: 5.134966e-02	ci left: 3.586369e-01	ci right 3.776400e-01	k: 3681	n:10000
OR4C15   10000 perm   2 sec   (5020 perm/sec)   p_kst 3.681000e-01   p_cons 6.370000e-02   p_joint 1.817000e-01

Joint ci ratio: 6.625540e-02	ci left: 1.439926e-01	ci right 1.539097e-01	k: 2978	n:20000
Cons ci ratio: 1.073513e-01	ci left: 5.913530e-02	ci right 6.589257e-02	k: 1249	n:20000
KS ci ratio: 3.651331e-02	ci left: 3.588707e-01	ci right 3.722685e-01	k: 7311	n:20000
OR4C15   20000 perm   4 sec   (4562 perm/sec)   p_kst 3.655500e-01   p_cons 6.245000e-02   p_joint 1.489000e-01

Joint ci ratio: 5.091841e-02	ci left: 1.607497e-01	ci right 1.691819e-01	k: 4948	n:30000
Cons ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
KS ci ratio: 2.978727e-02	ci left: 3.605123e-01	ci right 3.714470e-01	k: 10979	n:30000
OR4C15   30000 perm   7 sec   (4394 perm/sec)   p_kst 3.659667e-01   p_cons 6.160000e-02   p_joint 1.649333e-01

Outputting figure to mutsig2_images.part000000000121/OR4C15.19_1115_30000_0.36597_0.0616_0.16493.png
                gene_name: OR4C15
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 4 percent done.
OR2T4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
OR2T4   10000 perm   2 sec   (5370 perm/sec)   p_kst 1.161000e-01   p_cons 8.760000e-01   p_joint 2.754000e-01

Joint ci ratio: 5.698118e-02	ci left: 1.858691e-01	ci right 1.968208e-01	k: 3826	n:20000
Cons ci ratio: 1.079137e-02	ci left: 8.636363e-01	ci right 8.730563e-01	k: 17368	n:20000
KS ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
OR2T4   20000 perm   4 sec   (4852 perm/sec)   p_kst 1.243500e-01   p_cons 8.684000e-01   p_joint 1.913000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T4.18_1051_20000_0.12435_0.8684_0.1913.png
                gene_name: OR2T4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 5 percent done.
OR2M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
Cons ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
OR2M2   10000 perm   2 sec   (4821 perm/sec)   p_kst 1.724000e-01   p_cons 3.697000e-01   p_joint 2.495000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M2.17_1046_10000_0.1724_0.3697_0.2495.png
                gene_name: OR2M2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 6 percent done.
OR2T33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
Cons ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
KS ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
OR2T33   10000 perm   2 sec   (5060 perm/sec)   p_kst 2.157000e-01   p_cons 5.329000e-01   p_joint 3.575000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T33.17_966_10000_0.2157_0.5329_0.3575.png
                gene_name: OR2T33
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
OR2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
OR2C3   10000 perm   2 sec   (5049 perm/sec)   p_kst 8.090000e-02   p_cons 7.281000e-01   p_joint 1.544000e-01

Joint ci ratio: 6.666347e-02	ci left: 1.424641e-01	ci right 1.523386e-01	k: 2947	n:20000
Cons ci ratio: 1.669474e-02	ci left: 7.276160e-01	ci right 7.399159e-01	k: 14676	n:20000
KS ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
OR2C3   20000 perm   4 sec   (4565 perm/sec)   p_kst 8.230000e-02   p_cons 7.338000e-01   p_joint 1.473500e-01

Outputting figure to mutsig2_images.part000000000121/OR2C3.16_967_20000_0.0823_0.7338_0.14735.png
                gene_name: OR2C3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
OR2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
Cons ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
KS ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
OR2L3   10000 perm   2 sec   (5474 perm/sec)   p_kst 3.346000e-01   p_cons 6.846000e-01   p_joint 5.869000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L3.16_943_10000_0.3346_0.6846_0.5869.png
                gene_name: OR2L3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 10 percent done.
OR2W3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085963e-02	ci left: 4.693659e-01	ci right 4.890462e-01	k: 4792	n:10000
Cons ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
KS ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
OR2W3   10000 perm   2 sec   (5071 perm/sec)   p_kst 3.009000e-01   p_cons 8.044000e-01   p_joint 4.792000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W3.16_947_10000_0.3009_0.8044_0.4792.png
                gene_name: OR2W3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 11 percent done.
OR2G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
Cons ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
KS ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
OR2G2   10000 perm   2 sec   (4796 perm/sec)   p_kst 9.533000e-01   p_cons 3.326000e-01   p_joint 8.602000e-01

Outputting figure to mutsig2_images.part000000000121/OR2G2.15_957_10000_0.9533_0.3326_0.8602.png
                gene_name: OR2G2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 12 percent done.
OR2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
KS ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
OR2G6   10000 perm   2 sec   (5487 perm/sec)   p_kst 8.813000e-01   p_cons 8.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2G6.15_955_10000_0.8813_0.8831_1.png
                gene_name: OR2G6
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
OR2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
OR2L2   10000 perm   2 sec   (5455 perm/sec)   p_kst 6.767000e-01   p_cons 3.673000e-01   p_joint 7.198000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L2.15_943_10000_0.6767_0.3673_0.7198.png
                gene_name: OR2L2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 15 percent done.
OR2L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
OR2L8   10000 perm   2 sec   (5143 perm/sec)   p_kst 7.000000e-02   p_cons 1.949000e-01   p_joint 9.170000e-02

Joint ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
Cons ci ratio: 5.649787e-02	ci left: 1.884901e-01	ci right 1.994991e-01	k: 3879	n:20000
KS ci ratio: 9.958521e-02	ci left: 6.830848e-02	ci right 7.551658e-02	k: 1437	n:20000
OR2L8   20000 perm   4 sec   (4703 perm/sec)   p_kst 7.185000e-02   p_cons 1.939500e-01   p_joint 9.450000e-02

Outputting figure to mutsig2_images.part000000000121/OR2L8.15_943_20000_0.07185_0.19395_0.0945.png
                gene_name: OR2L8
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.099 

Current progress: 16 percent done.
OR2M7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
OR2M7   10000 perm   2 sec   (5095 perm/sec)   p_kst 3.243000e-01   p_cons 9.429000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M7.15_942_10000_0.3243_0.9429_0.474.png
                gene_name: OR2M7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 17 percent done.
OR4C16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
OR4C16   10000 perm   2 sec   (5558 perm/sec)   p_kst 1.900000e-03   p_cons 1.752000e-01   p_joint 1.200000e-02

Joint ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
Cons ci ratio: 6.037111e-02	ci left: 1.688180e-01	ci right 1.793770e-01	k: 3481	n:20000
KS ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
OR4C16   20000 perm   4 sec   (5025 perm/sec)   p_kst 2.150000e-03   p_cons 1.740500e-01   p_joint 7.650000e-03

Joint ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
Cons ci ratio: 4.906006e-02	ci left: 1.711444e-01	ci right 1.797852e-01	k: 5263	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
OR4C16   30000 perm   6 sec   (4814 perm/sec)   p_kst 2.533333e-03   p_cons 1.754333e-01   p_joint 5.466667e-03

Joint ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
Cons ci ratio: 4.250082e-02	ci left: 1.716346e-01	ci right 1.791126e-01	k: 7014	n:40000
KS ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
OR4C16   40000 perm   9 sec   (4670 perm/sec)   p_kst 2.175000e-03   p_cons 1.753500e-01   p_joint 3.175000e-03

Joint ci ratio: 1.977193e-01	ci left: 7.028568e-03	ci right 8.589391e-03	k: 389	n:50000
Cons ci ratio: 3.798965e-02	ci left: 1.722144e-01	ci right 1.789033e-01	k: 8777	n:50000
KS ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
OR4C16   50000 perm   11 sec   (4559 perm/sec)   p_kst 2.340000e-03   p_cons 1.755400e-01   p_joint 7.780000e-03

Joint ci ratio: 2.048380e-01	ci left: 5.445169e-03	ci right 6.703327e-03	k: 363	n:60000
Cons ci ratio: 3.473088e-02	ci left: 1.720830e-01	ci right 1.781818e-01	k: 10507	n:60000
KS ci ratio: 3.333058e-01	ci left: 1.917344e-03	ci right 2.698712e-03	k: 137	n:60000
OR4C16   60000 perm   13 sec   (4461 perm/sec)   p_kst 2.283333e-03   p_cons 1.751167e-01   p_joint 6.050000e-03

Joint ci ratio: 2.317259e-01	ci left: 3.599760e-03	ci right 4.556355e-03	k: 284	n:70000
Cons ci ratio: 3.153017e-02	ci left: 1.780119e-01	ci right 1.837288e-01	k: 12660	n:70000
KS ci ratio: 3.115041e-01	ci left: 1.906053e-03	ci right 2.621922e-03	k: 157	n:70000
OR4C16   70000 perm   16 sec   (4365 perm/sec)   p_kst 2.242857e-03   p_cons 1.808571e-01   p_joint 4.057143e-03

Joint ci ratio: 1.591640e-01	ci left: 6.925811e-03	ci right 8.135315e-03	k: 601	n:80000
Cons ci ratio: 3.009436e-02	ci left: 1.723353e-01	ci right 1.776133e-01	k: 13997	n:80000
KS ci ratio: 2.870922e-01	ci left: 1.991570e-03	ci right 2.670328e-03	k: 185	n:80000
OR4C16   80000 perm   19 sec   (4265 perm/sec)   p_kst 2.312500e-03   p_cons 1.749625e-01   p_joint 7.512500e-03

Joint ci ratio: 1.677141e-01	ci left: 5.527173e-03	ci right 6.549503e-03	k: 542	n:90000
Cons ci ratio: 2.838280e-02	ci left: 1.723900e-01	ci right 1.773643e-01	k: 15738	n:90000
KS ci ratio: 2.754990e-01	ci left: 1.935518e-03	ci right 2.563920e-03	k: 201	n:90000
OR4C16   90000 perm   22 sec   (4179 perm/sec)   p_kst 2.233333e-03   p_cons 1.748667e-01   p_joint 6.022222e-03

Joint ci ratio: 1.628614e-01	ci left: 5.290752e-03	ci right 6.238260e-03	k: 575	n:100000
Cons ci ratio: 2.694477e-02	ci left: 1.723212e-01	ci right 1.770377e-01	k: 17467	n:100000
KS ci ratio: 2.639942e-01	ci left: 1.909795e-03	ci right 2.499674e-03	k: 219	n:100000
OR4C16   100000 perm   24 sec   (4108 perm/sec)   p_kst 2.190000e-03   p_cons 1.746700e-01   p_joint 5.750000e-03

Joint ci ratio: 1.590633e-01	ci left: 5.054017e-03	ci right 5.936000e-03	k: 603	n:110000
Cons ci ratio: 2.576707e-02	ci left: 1.715828e-01	ci right 1.760707e-01	k: 19120	n:110000
KS ci ratio: 2.559845e-01	ci left: 1.855150e-03	ci right 2.407990e-03	k: 233	n:110000
OR4C16   110000 perm   27 sec   (4038 perm/sec)   p_kst 2.118182e-03   p_cons 1.738182e-01   p_joint 5.481818e-03

Joint ci ratio: 1.581813e-01	ci left: 4.688796e-03	ci right 5.502071e-03	k: 610	n:120000
Cons ci ratio: 2.468175e-02	ci left: 1.715436e-01	ci right 1.758388e-01	k: 20842	n:120000
KS ci ratio: 2.481610e-01	ci left: 1.817654e-03	ci right 2.340210e-03	k: 248	n:120000
OR4C16   120000 perm   30 sec   (3969 perm/sec)   p_kst 2.066667e-03   p_cons 1.736833e-01   p_joint 5.083333e-03

Joint ci ratio: 1.569274e-01	ci left: 4.401957e-03	ci right 5.158854e-03	k: 620	n:130000
Cons ci ratio: 2.369056e-02	ci left: 1.719043e-01	ci right 1.760333e-01	k: 22615	n:130000
KS ci ratio: 2.344314e-01	ci left: 1.894671e-03	ci right 2.404867e-03	k: 278	n:130000
OR4C16   130000 perm   33 sec   (3904 perm/sec)   p_kst 2.138462e-03   p_cons 1.739615e-01   p_joint 4.769231e-03

Joint ci ratio: 1.315764e-01	ci left: 5.885311e-03	ci right 6.721048e-03	k: 881	n:140000
Cons ci ratio: 2.280482e-02	ci left: 1.722804e-01	ci right 1.762616e-01	k: 24397	n:140000
KS ci ratio: 2.272193e-01	ci left: 1.880474e-03	ci right 2.369086e-03	k: 296	n:140000
OR4C16   140000 perm   36 sec   (3841 perm/sec)   p_kst 2.114286e-03   p_cons 1.742643e-01   p_joint 6.292857e-03

Joint ci ratio: 1.287708e-01	ci left: 5.744463e-03	ci right 6.541474e-03	k: 920	n:150000
Cons ci ratio: 2.202019e-02	ci left: 1.724960e-01	ci right 1.763433e-01	k: 26162	n:150000
KS ci ratio: 2.206342e-01	ci left: 1.868377e-03	ci right 2.337868e-03	k: 314	n:150000
OR4C16   150000 perm   40 sec   (3781 perm/sec)   p_kst 2.093333e-03   p_cons 1.744133e-01   p_joint 6.133333e-03

Joint ci ratio: 1.254161e-01	ci left: 5.687989e-03	ci right 6.455075e-03	k: 970	n:160000
Cons ci ratio: 2.131134e-02	ci left: 1.726866e-01	ci right 1.764127e-01	k: 27927	n:160000
KS ci ratio: 2.155656e-01	ci left: 1.840230e-03	ci right 2.290619e-03	k: 329	n:160000
OR4C16   160000 perm   43 sec   (3724 perm/sec)   p_kst 2.056250e-03   p_cons 1.745437e-01   p_joint 6.062500e-03

Joint ci ratio: 1.227954e-01	ci left: 5.592773e-03	ci right 6.330111e-03	k: 1012	n:170000
Cons ci ratio: 2.068877e-02	ci left: 1.725520e-01	ci right 1.761650e-01	k: 29640	n:170000
KS ci ratio: 2.093164e-01	ci left: 1.843370e-03	ci right 2.279772e-03	k: 349	n:170000
OR4C16   170000 perm   47 sec   (3653 perm/sec)   p_kst 2.052941e-03   p_cons 1.743529e-01   p_joint 5.952941e-03

Joint ci ratio: 1.243055e-01	ci left: 5.152777e-03	ci right 5.841074e-03	k: 988	n:180000
Cons ci ratio: 2.007627e-02	ci left: 1.730258e-01	ci right 1.765402e-01	k: 31460	n:180000
KS ci ratio: 2.030318e-01	ci left: 1.856875e-03	ci right 2.281640e-03	k: 371	n:180000
OR4C16   180000 perm   50 sec   (3600 perm/sec)   p_kst 2.061111e-03   p_cons 1.747778e-01   p_joint 5.488889e-03

Joint ci ratio: 1.233865e-01	ci left: 4.958049e-03	ci right 5.615079e-03	k: 1003	n:190000
Cons ci ratio: 1.954539e-02	ci left: 1.730055e-01	ci right 1.764255e-01	k: 33195	n:190000
KS ci ratio: 1.945781e-01	ci left: 1.924194e-03	ci right 2.343860e-03	k: 404	n:190000
OR4C16   190000 perm   54 sec   (3512 perm/sec)   p_kst 2.126316e-03   p_cons 1.747105e-01   p_joint 5.278947e-03

Joint ci ratio: 1.232180e-01	ci left: 4.724649e-03	ci right 5.349830e-03	k: 1006	n:200000
Cons ci ratio: 1.905252e-02	ci left: 1.730182e-01	ci right 1.763513e-01	k: 34936	n:200000
KS ci ratio: 1.913033e-01	ci left: 1.894600e-03	ci right 2.300048e-03	k: 418	n:200000
OR4C16   200000 perm   58 sec   (3433 perm/sec)   p_kst 2.090000e-03   p_cons 1.746800e-01   p_joint 5.030000e-03

Joint ci ratio: 1.223810e-01	ci left: 4.564261e-03	ci right 5.163818e-03	k: 1020	n:210000
Cons ci ratio: 1.858503e-02	ci left: 1.731872e-01	ci right 1.764408e-01	k: 36710	n:210000
KS ci ratio: 1.868953e-01	ci left: 1.895111e-03	ci right 2.290263e-03	k: 438	n:210000
OR4C16   210000 perm   62 sec   (3385 perm/sec)   p_kst 2.085714e-03   p_cons 1.748095e-01   p_joint 4.857143e-03

Joint ci ratio: 1.215011e-01	ci left: 4.422877e-03	ci right 4.999383e-03	k: 1035	n:220000
Cons ci ratio: 1.815949e-02	ci left: 1.731969e-01	ci right 1.763753e-01	k: 38452	n:220000
KS ci ratio: 1.837844e-01	ci left: 1.873986e-03	ci right 2.257505e-03	k: 453	n:220000
OR4C16   220000 perm   66 sec   (3315 perm/sec)   p_kst 2.059091e-03   p_cons 1.747818e-01   p_joint 4.704545e-03

Joint ci ratio: 1.224672e-01	ci left: 4.163101e-03	ci right 4.710373e-03	k: 1019	n:230000
Cons ci ratio: 1.776645e-02	ci left: 1.731328e-01	ci right 1.762406e-01	k: 40177	n:230000
KS ci ratio: 1.806309e-01	ci left: 1.858899e-03	ci right 2.232089e-03	k: 469	n:230000
OR4C16   230000 perm   70 sec   (3265 perm/sec)   p_kst 2.039130e-03   p_cons 1.746826e-01   p_joint 4.430435e-03

Joint ci ratio: 1.192349e-01	ci left: 4.215925e-03	ci right 4.754483e-03	k: 1075	n:240000
Cons ci ratio: 1.740417e-02	ci left: 1.729710e-01	ci right 1.760119e-01	k: 41877	n:240000
KS ci ratio: 1.761872e-01	ci left: 1.876981e-03	ci right 2.243544e-03	k: 493	n:240000
OR4C16   240000 perm   74 sec   (3227 perm/sec)   p_kst 2.054167e-03   p_cons 1.744875e-01   p_joint 4.479167e-03

Joint ci ratio: 1.191345e-01	ci left: 4.055030e-03	ci right 4.572566e-03	k: 1077	n:250000
Cons ci ratio: 1.706602e-02	ci left: 1.727748e-01	ci right 1.757527e-01	k: 43565	n:250000
KS ci ratio: 1.728942e-01	ci left: 1.874582e-03	ci right 2.233120e-03	k: 512	n:250000
OR4C16   250000 perm   78 sec   (3189 perm/sec)   p_kst 2.048000e-03   p_cons 1.742600e-01   p_joint 4.308000e-03

Joint ci ratio: 1.231673e-01	ci left: 3.641675e-03	ci right 4.123334e-03	k: 1008	n:260000
Cons ci ratio: 1.673990e-02	ci left: 1.727132e-01	ci right 1.756326e-01	k: 45284	n:260000
KS ci ratio: 1.699394e-01	ci left: 1.868743e-03	ci right 2.219429e-03	k: 530	n:260000
OR4C16   260000 perm   82 sec   (3152 perm/sec)   p_kst 2.038462e-03   p_cons 1.741692e-01   p_joint 3.876923e-03

Joint ci ratio: 1.311078e-01	ci left: 3.083588e-03	ci right 3.519774e-03	k: 890	n:270000
Cons ci ratio: 1.642925e-02	ci left: 1.727009e-01	ci right 1.755654e-01	k: 47015	n:270000
KS ci ratio: 1.666753e-01	ci left: 1.874032e-03	ci right 2.218278e-03	k: 551	n:270000
OR4C16   270000 perm   87 sec   (3118 perm/sec)   p_kst 2.040741e-03   p_cons 1.741296e-01   p_joint 3.296296e-03

Joint ci ratio: 1.302387e-01	ci left: 3.014909e-03	ci right 3.438334e-03	k: 902	n:280000
Cons ci ratio: 1.613748e-02	ci left: 1.726508e-01	ci right 1.754631e-01	k: 48735	n:280000
KS ci ratio: 1.631650e-01	ci left: 1.889280e-03	ci right 2.228301e-03	k: 575	n:280000
OR4C16   280000 perm   91 sec   (3083 perm/sec)   p_kst 2.053571e-03   p_cons 1.740536e-01   p_joint 3.221429e-03

Joint ci ratio: 1.281282e-01	ci left: 3.011051e-03	ci right 3.426561e-03	k: 932	n:290000
Cons ci ratio: 1.585634e-02	ci left: 1.726836e-01	ci right 1.754470e-01	k: 50478	n:290000
KS ci ratio: 1.616316e-01	ci left: 1.860520e-03	ci right 2.190938e-03	k: 586	n:290000
OR4C16   290000 perm   95 sec   (3049 perm/sec)   p_kst 2.020690e-03   p_cons 1.740621e-01   p_joint 3.213793e-03

Joint ci ratio: 1.265131e-01	ci left: 2.988132e-03	ci right 3.394892e-03	k: 956	n:300000
Cons ci ratio: 1.558218e-02	ci left: 1.728476e-01	ci right 1.755654e-01	k: 52261	n:300000
KS ci ratio: 1.586848e-01	ci left: 1.868898e-03	ci right 2.194176e-03	k: 608	n:300000
OR4C16   300000 perm   100 sec   (3014 perm/sec)   p_kst 2.026667e-03   p_cons 1.742033e-01   p_joint 3.186667e-03

Joint ci ratio: 1.301868e-01	ci left: 2.726238e-03	ci right 3.108955e-03	k: 903	n:310000
Cons ci ratio: 1.533053e-02	ci left: 1.728373e-01	ci right 1.755107e-01	k: 53993	n:310000
KS ci ratio: 1.562663e-01	ci left: 1.867485e-03	ci right 2.187100e-03	k: 627	n:310000
OR4C16   310000 perm   104 sec   (2980 perm/sec)   p_kst 2.022581e-03   p_cons 1.741710e-01   p_joint 2.912903e-03

Joint ci ratio: 1.296902e-01	ci left: 2.662201e-03	ci right 3.034393e-03	k: 910	n:320000
Cons ci ratio: 1.508118e-02	ci left: 1.730088e-01	ci right 1.756409e-01	k: 55783	n:320000
KS ci ratio: 1.534803e-01	ci left: 1.878217e-03	ci right 2.193410e-03	k: 650	n:320000
OR4C16   320000 perm   109 sec   (2948 perm/sec)   p_kst 2.031250e-03   p_cons 1.743219e-01   p_joint 2.843750e-03

Joint ci ratio: 1.280158e-01	ci left: 2.651910e-03	ci right 3.017513e-03	k: 934	n:330000
Cons ci ratio: 1.485331e-02	ci left: 1.729828e-01	ci right 1.755744e-01	k: 57511	n:330000
KS ci ratio: 1.508383e-01	ci left: 1.888345e-03	ci right 2.199291e-03	k: 673	n:330000
OR4C16   330000 perm   113 sec   (2916 perm/sec)   p_kst 2.039394e-03   p_cons 1.742758e-01   p_joint 2.830303e-03

Joint ci ratio: 1.276112e-01	ci left: 2.590990e-03	ci right 2.946980e-03	k: 940	n:340000
Cons ci ratio: 1.462828e-02	ci left: 1.730995e-01	ci right 1.756532e-01	k: 59287	n:340000
KS ci ratio: 1.495150e-01	ci left: 1.866772e-03	ci right 2.171227e-03	k: 685	n:340000
OR4C16   340000 perm   118 sec   (2885 perm/sec)   p_kst 2.014706e-03   p_cons 1.743735e-01   p_joint 2.764706e-03

Joint ci ratio: 1.266084e-01	ci left: 2.558454e-03	ci right 2.907003e-03	k: 955	n:350000
Cons ci ratio: 1.442563e-02	ci left: 1.729618e-01	ci right 1.754779e-01	k: 60976	n:350000
KS ci ratio: 1.485462e-01	ci left: 1.838189e-03	ci right 2.135867e-03	k: 694	n:350000
OR4C16   350000 perm   123 sec   (2853 perm/sec)   p_kst 1.982857e-03   p_cons 1.742171e-01   p_joint 2.728571e-03

Joint ci ratio: 1.198281e-01	ci left: 2.786241e-03	ci right 3.144056e-03	k: 1066	n:360000
Cons ci ratio: 1.446813e-02	ci left: 1.681483e-01	ci right 1.706015e-01	k: 60974	n:360000
KS ci ratio: 1.458420e-01	ci left: 1.856692e-03	ci right 2.151416e-03	k: 720	n:360000
OR4C16   360000 perm   128 sec   (2822 perm/sec)   p_kst 2.000000e-03   p_cons 1.693722e-01   p_joint 2.961111e-03

Joint ci ratio: 1.183406e-01	ci left: 2.781736e-03	ci right 3.134228e-03	k: 1093	n:370000
Cons ci ratio: 1.427631e-02	ci left: 1.680659e-01	ci right 1.704852e-01	k: 62631	n:370000
KS ci ratio: 1.440553e-01	ci left: 1.853395e-03	ci right 2.143682e-03	k: 738	n:370000
OR4C16   370000 perm   132 sec   (2793 perm/sec)   p_kst 1.994595e-03   p_cons 1.692730e-01   p_joint 2.954054e-03

Joint ci ratio: 1.222151e-01	ci left: 2.534948e-03	ci right 2.867445e-03	k: 1025	n:380000
Cons ci ratio: 1.408402e-02	ci left: 1.681456e-01	ci right 1.705331e-01	k: 64348	n:380000
KS ci ratio: 1.429966e-01	ci left: 1.832528e-03	ci right 2.117257e-03	k: 749	n:380000
OR4C16   380000 perm   138 sec   (2763 perm/sec)   p_kst 1.971053e-03   p_cons 1.693368e-01   p_joint 2.697368e-03

Joint ci ratio: 1.205806e-01	ci left: 2.539564e-03	ci right 2.867894e-03	k: 1053	n:390000
Cons ci ratio: 1.390322e-02	ci left: 1.681421e-01	ci right 1.704987e-01	k: 66034	n:390000
KS ci ratio: 1.412192e-01	ci left: 1.832526e-03	ci right 2.113417e-03	k: 768	n:390000
OR4C16   390000 perm   143 sec   (2735 perm/sec)   p_kst 1.969231e-03   p_cons 1.693179e-01   p_joint 2.700000e-03

Joint ci ratio: 1.196213e-01	ci left: 2.517296e-03	ci right 2.839975e-03	k: 1070	n:400000
Cons ci ratio: 1.372750e-02	ci left: 1.681739e-01	ci right 1.705009e-01	k: 67734	n:400000
KS ci ratio: 1.395064e-01	ci left: 1.832545e-03	ci right 2.109749e-03	k: 787	n:400000
OR4C16   400000 perm   148 sec   (2706 perm/sec)   p_kst 1.967500e-03   p_cons 1.693350e-01   p_joint 2.675000e-03

Joint ci ratio: 1.025846e-01	ci left: 3.366678e-03	ci right 3.733076e-03	k: 1454	n:410000
Cons ci ratio: 1.355781e-02	ci left: 1.682140e-01	ci right 1.705126e-01	k: 69438	n:410000
KS ci ratio: 1.376837e-01	ci left: 1.837292e-03	ci right 2.111286e-03	k: 808	n:410000
OR4C16   410000 perm   153 sec   (2679 perm/sec)   p_kst 1.970732e-03   p_cons 1.693610e-01   p_joint 3.546341e-03

Joint ci ratio: 1.028731e-01	ci left: 3.267953e-03	ci right 3.624666e-03	k: 1446	n:420000
Cons ci ratio: 1.339709e-02	ci left: 1.681931e-01	ci right 1.704639e-01	k: 71117	n:420000
KS ci ratio: 1.360949e-01	ci left: 1.837236e-03	ci right 2.107804e-03	k: 827	n:420000
OR4C16   420000 perm   158 sec   (2652 perm/sec)   p_kst 1.969048e-03   p_cons 1.693262e-01   p_joint 3.442857e-03

Joint ci ratio: 1.024167e-01	ci left: 3.221406e-03	ci right 3.571385e-03	k: 1459	n:430000
Cons ci ratio: 1.324098e-02	ci left: 1.681941e-01	ci right 1.704383e-01	k: 72805	n:430000
KS ci ratio: 1.346396e-01	ci left: 1.834952e-03	ci right 2.102062e-03	k: 845	n:430000
OR4C16   430000 perm   164 sec   (2626 perm/sec)   p_kst 1.965116e-03   p_cons 1.693140e-01   p_joint 3.393023e-03

Joint ci ratio: 1.063276e-01	ci left: 2.915759e-03	ci right 3.245384e-03	k: 1354	n:440000
Cons ci ratio: 1.308195e-02	ci left: 1.683720e-01	ci right 1.705914e-01	k: 74571	n:440000
KS ci ratio: 1.323125e-01	ci left: 1.859156e-03	ci right 2.124744e-03	k: 875	n:440000
OR4C16   440000 perm   169 sec   (2599 perm/sec)   p_kst 1.988636e-03   p_cons 1.694795e-01   p_joint 3.077273e-03

Joint ci ratio: 1.049421e-01	ci left: 2.928852e-03	ci right 3.255376e-03	k: 1390	n:450000
Cons ci ratio: 1.293545e-02	ci left: 1.683915e-01	ci right 1.705861e-01	k: 76269	n:450000
KS ci ratio: 1.304632e-01	ci left: 1.871571e-03	ci right 2.134907e-03	k: 900	n:450000
OR4C16   450000 perm   175 sec   (2574 perm/sec)   p_kst 2.000000e-03   p_cons 1.694867e-01   p_joint 3.088889e-03

Joint ci ratio: 1.037919e-01	ci left: 2.930813e-03	ci right 3.253757e-03	k: 1421	n:460000
Cons ci ratio: 1.279407e-02	ci left: 1.684038e-01	ci right 1.705743e-01	k: 77964	n:460000
KS ci ratio: 1.293913e-01	ci left: 1.862433e-03	ci right 2.122164e-03	k: 915	n:460000
OR4C16   460000 perm   181 sec   (2548 perm/sec)   p_kst 1.989130e-03   p_cons 1.694870e-01   p_joint 3.089130e-03

Joint ci ratio: 1.023612e-01	ci left: 2.951369e-03	ci right 3.271826e-03	k: 1461	n:470000
Cons ci ratio: 1.265196e-02	ci left: 1.685323e-01	ci right 1.706803e-01	k: 79714	n:470000
KS ci ratio: 1.282075e-01	ci left: 1.857811e-03	ci right 2.114347e-03	k: 932	n:470000
OR4C16   470000 perm   186 sec   (2523 perm/sec)   p_kst 1.982979e-03   p_cons 1.696043e-01   p_joint 3.108511e-03

Joint ci ratio: 1.054476e-01	ci left: 2.719412e-03	ci right 3.024138e-03	k: 1377	n:480000
Cons ci ratio: 1.252458e-02	ci left: 1.684292e-01	ci right 1.705540e-01	k: 81355	n:480000
KS ci ratio: 1.271226e-01	ci left: 1.851375e-03	ci right 2.104696e-03	k: 948	n:480000
OR4C16   480000 perm   192 sec   (2500 perm/sec)   p_kst 1.975000e-03   p_cons 1.694896e-01   p_joint 2.868750e-03

Joint ci ratio: 1.044670e-01	ci left: 2.715582e-03	ci right 3.016875e-03	k: 1403	n:490000
Cons ci ratio: 1.239844e-02	ci left: 1.683873e-01	ci right 1.704901e-01	k: 83024	n:490000
KS ci ratio: 1.258038e-01	ci left: 1.853117e-03	ci right 2.103850e-03	k: 968	n:490000
OR4C16   490000 perm   198 sec   (2476 perm/sec)   p_kst 1.975510e-03   p_cons 1.694367e-01   p_joint 2.863265e-03

Joint ci ratio: 1.050341e-01	ci left: 2.632050e-03	ci right 2.925758e-03	k: 1388	n:500000
Cons ci ratio: 1.227596e-02	ci left: 1.683492e-01	ci right 1.704306e-01	k: 84694	n:500000
KS ci ratio: 1.243993e-01	ci left: 1.858678e-03	ci right 2.107149e-03	k: 990	n:500000
OR4C16   500000 perm   204 sec   (2452 perm/sec)   p_kst 1.980000e-03   p_cons 1.693880e-01   p_joint 2.776000e-03

Joint ci ratio: 9.373322e-02	ci left: 3.257408e-03	ci right 3.579647e-03	k: 1742	n:510000
Cons ci ratio: 1.215424e-02	ci left: 1.683773e-01	ci right 1.704382e-01	k: 86397	n:510000
KS ci ratio: 1.229800e-01	ci left: 1.865937e-03	ci right 2.112325e-03	k: 1013	n:510000
OR4C16   510000 perm   210 sec   (2429 perm/sec)   p_kst 1.986275e-03   p_cons 1.694059e-01   p_joint 3.415686e-03

Joint ci ratio: 9.508684e-02	ci left: 3.102747e-03	ci right 3.414366e-03	k: 1693	n:520000
Cons ci ratio: 1.203755e-02	ci left: 1.683698e-01	ci right 1.704108e-01	k: 88082	n:520000
KS ci ratio: 1.223194e-01	ci left: 1.850557e-03	ci right 2.093507e-03	k: 1024	n:520000
OR4C16   520000 perm   216 sec   (2407 perm/sec)   p_kst 1.969231e-03   p_cons 1.693885e-01   p_joint 3.255769e-03

Joint ci ratio: 9.422870e-02	ci left: 3.101311e-03	ci right 3.409819e-03	k: 1724	n:530000
Cons ci ratio: 1.192704e-02	ci left: 1.682950e-01	ci right 1.703162e-01	k: 89731	n:530000
KS ci ratio: 1.211432e-01	ci left: 1.852228e-03	ci right 2.092891e-03	k: 1044	n:530000
OR4C16   530000 perm   222 sec   (2384 perm/sec)   p_kst 1.969811e-03   p_cons 1.693038e-01   p_joint 3.252830e-03

Joint ci ratio: 9.450676e-02	ci left: 3.025792e-03	ci right 3.327725e-03	k: 1714	n:540000
Cons ci ratio: 1.181781e-02	ci left: 1.682637e-01	ci right 1.702658e-01	k: 91402	n:540000
KS ci ratio: 1.202835e-01	ci left: 1.844866e-03	ci right 2.082750e-03	k: 1059	n:540000
OR4C16   540000 perm   229 sec   (2363 perm/sec)   p_kst 1.961111e-03   p_cons 1.692630e-01   p_joint 3.174074e-03

Joint ci ratio: 9.498289e-02	ci left: 2.940595e-03	ci right 3.235587e-03	k: 1697	n:550000
Cons ci ratio: 1.171099e-02	ci left: 1.682462e-01	ci right 1.702300e-01	k: 93080	n:550000
KS ci ratio: 1.194419e-01	ci left: 1.837778e-03	ci right 2.072973e-03	k: 1074	n:550000
OR4C16   550000 perm   235 sec   (2341 perm/sec)   p_kst 1.952727e-03   p_cons 1.692364e-01   p_joint 3.085455e-03

Joint ci ratio: 9.431925e-02	ci left: 2.929926e-03	ci right 3.221681e-03	k: 1721	n:560000
Cons ci ratio: 1.160495e-02	ci left: 1.682794e-01	ci right 1.702454e-01	k: 94786	n:560000
KS ci ratio: 1.182919e-01	ci left: 1.841346e-03	ci right 2.074569e-03	k: 1095	n:560000
OR4C16   560000 perm   241 sec   (2320 perm/sec)   p_kst 1.955357e-03   p_cons 1.692607e-01   p_joint 3.073214e-03

Joint ci ratio: 9.375015e-02	ci left: 2.914498e-03	ci right 3.202870e-03	k: 1742	n:570000
Cons ci ratio: 1.150117e-02	ci left: 1.683255e-01	ci right 1.702744e-01	k: 96500	n:570000
KS ci ratio: 1.177036e-01	ci left: 1.827769e-03	ci right 2.058042e-03	k: 1106	n:570000
OR4C16   570000 perm   248 sec   (2300 perm/sec)   p_kst 1.940351e-03   p_cons 1.692982e-01   p_joint 3.056140e-03

Joint ci ratio: 9.340390e-02	ci left: 2.886136e-03	ci right 3.170588e-03	k: 1755	n:580000
Cons ci ratio: 1.139747e-02	ci left: 1.684354e-01	ci right 1.703679e-01	k: 98252	n:580000
KS ci ratio: 1.168103e-01	ci left: 1.824706e-03	ci right 2.052728e-03	k: 1123	n:580000
OR4C16   580000 perm   254 sec   (2280 perm/sec)   p_kst 1.936207e-03   p_cons 1.694000e-01   p_joint 3.025862e-03

Joint ci ratio: 9.692986e-02	ci left: 2.630378e-03	ci right 2.899965e-03	k: 1630	n:590000
Cons ci ratio: 1.130401e-02	ci left: 1.683557e-01	ci right 1.702713e-01	k: 99894	n:590000
KS ci ratio: 1.157340e-01	ci left: 1.828337e-03	ci right 2.054564e-03	k: 1144	n:590000
OR4C16   590000 perm   261 sec   (2260 perm/sec)   p_kst 1.938983e-03   p_cons 1.693119e-01   p_joint 2.762712e-03

Joint ci ratio: 9.789985e-02	ci left: 2.534498e-03	ci right 2.797007e-03	k: 1598	n:600000
Cons ci ratio: 1.120418e-02	ci left: 1.684949e-01	ci right 1.703950e-01	k: 101666	n:600000
KS ci ratio: 1.147856e-01	ci left: 1.828619e-03	ci right 2.052901e-03	k: 1163	n:600000
OR4C16   600000 perm   268 sec   (2241 perm/sec)   p_kst 1.938333e-03   p_cons 1.694433e-01   p_joint 2.663333e-03

Joint ci ratio: 9.714352e-02	ci left: 2.532933e-03	ci right 2.793138e-03	k: 1623	n:610000
Cons ci ratio: 1.111257e-02	ci left: 1.684872e-01	ci right 1.703716e-01	k: 103351	n:610000
KS ci ratio: 1.140535e-01	ci left: 1.822527e-03	ci right 2.044541e-03	k: 1178	n:610000
OR4C16   610000 perm   275 sec   (2222 perm/sec)   p_kst 1.931148e-03   p_cons 1.694279e-01   p_joint 2.660656e-03

Joint ci ratio: 9.637515e-02	ci left: 2.533000e-03	ci right 2.791037e-03	k: 1649	n:620000
Cons ci ratio: 1.101939e-02	ci left: 1.685765e-01	ci right 1.704460e-01	k: 105096	n:620000
KS ci ratio: 1.133828e-01	ci left: 1.815070e-03	ci right 2.034787e-03	k: 1192	n:620000
OR4C16   620000 perm   281 sec   (2204 perm/sec)   p_kst 1.922581e-03   p_cons 1.695097e-01   p_joint 2.659677e-03

Joint ci ratio: 9.576808e-02	ci left: 2.525325e-03	ci right 2.780870e-03	k: 1670	n:630000
Cons ci ratio: 1.093437e-02	ci left: 1.685125e-01	ci right 1.703667e-01	k: 106746	n:630000
KS ci ratio: 1.124906e-01	ci left: 1.815566e-03	ci right 2.033499e-03	k: 1211	n:630000
OR4C16   630000 perm   288 sec   (2185 perm/sec)   p_kst 1.922222e-03   p_cons 1.694381e-01   p_joint 2.650794e-03

Joint ci ratio: 9.503165e-02	ci left: 2.525523e-03	ci right 2.779013e-03	k: 1696	n:640000
Cons ci ratio: 1.084538e-02	ci left: 1.686033e-01	ci right 1.704434e-01	k: 108494	n:640000
KS ci ratio: 1.116646e-01	ci left: 1.814534e-03	ci right 2.030639e-03	k: 1229	n:640000
OR4C16   640000 perm   295 sec   (2169 perm/sec)   p_kst 1.920312e-03   p_cons 1.695219e-01   p_joint 2.650000e-03

Joint ci ratio: 9.428452e-02	ci left: 2.527224e-03	ci right 2.778780e-03	k: 1723	n:650000
Cons ci ratio: 1.076105e-02	ci left: 1.686254e-01	ci right 1.704514e-01	k: 110199	n:650000
KS ci ratio: 1.109902e-01	ci left: 1.809052e-03	ci right 2.023118e-03	k: 1244	n:650000
OR4C16   650000 perm   302 sec   (2152 perm/sec)   p_kst 1.913846e-03   p_cons 1.695369e-01   p_joint 2.650769e-03

Joint ci ratio: 9.387783e-02	ci left: 2.511124e-03	ci right 2.759940e-03	k: 1738	n:660000
Cons ci ratio: 1.067993e-02	ci left: 1.686137e-01	ci right 1.704256e-01	k: 111882	n:660000
KS ci ratio: 1.105479e-01	ci left: 1.796374e-03	ci right 2.008037e-03	k: 1254	n:660000
OR4C16   660000 perm   309 sec   (2135 perm/sec)   p_kst 1.900000e-03   p_cons 1.695182e-01   p_joint 2.633333e-03

Joint ci ratio: 9.475782e-02	ci left: 2.427005e-03	ci right 2.669865e-03	k: 1706	n:670000
Cons ci ratio: 1.059472e-02	ci left: 1.687587e-01	ci right 1.705576e-01	k: 113670	n:670000
KS ci ratio: 1.096774e-01	ci left: 1.798591e-03	ci right 2.008738e-03	k: 1274	n:670000
OR4C16   670000 perm   316 sec   (2118 perm/sec)   p_kst 1.901493e-03   p_cons 1.696567e-01   p_joint 2.546269e-03

Joint ci ratio: 9.398992e-02	ci left: 2.431519e-03	ci right 2.672750e-03	k: 1734	n:680000
Cons ci ratio: 1.051881e-02	ci left: 1.687043e-01	ci right 1.704897e-01	k: 115325	n:680000
KS ci ratio: 1.083669e-01	ci left: 1.816487e-03	ci right 2.026028e-03	k: 1305	n:680000
OR4C16   680000 perm   324 sec   (2101 perm/sec)   p_kst 1.919118e-03   p_cons 1.695956e-01   p_joint 2.550000e-03

Joint ci ratio: 9.308172e-02	ci left: 2.444403e-03	ci right 2.684442e-03	k: 1768	n:690000
Cons ci ratio: 1.043962e-02	ci left: 1.687832e-01	ci right 1.705559e-01	k: 117071	n:690000
KS ci ratio: 1.074248e-01	ci left: 1.822595e-03	ci right 2.030897e-03	k: 1328	n:690000
OR4C16   690000 perm   331 sec   (2083 perm/sec)   p_kst 1.924638e-03   p_cons 1.696681e-01   p_joint 2.562319e-03

Joint ci ratio: 9.243093e-02	ci left: 2.444368e-03	ci right 2.682635e-03	k: 1793	n:700000
Cons ci ratio: 1.036467e-02	ci left: 1.687928e-01	ci right 1.705528e-01	k: 118770	n:700000
KS ci ratio: 1.069436e-01	ci left: 1.813241e-03	ci right 2.019487e-03	k: 1340	n:700000
OR4C16   700000 perm   339 sec   (2067 perm/sec)   p_kst 1.914286e-03   p_cons 1.696714e-01   p_joint 2.561429e-03

Joint ci ratio: 9.197118e-02	ci left: 2.434708e-03	ci right 2.670789e-03	k: 1811	n:710000
Cons ci ratio: 1.029269e-02	ci left: 1.687643e-01	ci right 1.705117e-01	k: 120442	n:710000
KS ci ratio: 1.065478e-01	ci left: 1.801410e-03	ci right 2.005505e-03	k: 1350	n:710000
OR4C16   710000 perm   346 sec   (2050 perm/sec)   p_kst 1.901408e-03   p_cons 1.696366e-01   p_joint 2.550704e-03

Joint ci ratio: 9.131833e-02	ci left: 2.436176e-03	ci right 2.670633e-03	k: 1837	n:720000
Cons ci ratio: 1.022103e-02	ci left: 1.687684e-01	ci right 1.705037e-01	k: 122137	n:720000
KS ci ratio: 1.058064e-01	ci left: 1.802079e-03	ci right 2.004740e-03	k: 1369	n:720000
OR4C16   720000 perm   354 sec   (2033 perm/sec)   p_kst 1.901389e-03   p_cons 1.696347e-01   p_joint 2.551389e-03

Joint ci ratio: 8.647776e-02	ci left: 2.685438e-03	ci right 2.929493e-03	k: 2048	n:730000
Cons ci ratio: 1.015228e-02	ci left: 1.687329e-01	ci right 1.704560e-01	k: 123803	n:730000
KS ci ratio: 1.046284e-01	ci left: 1.818742e-03	ci right 2.020860e-03	k: 1400	n:730000
OR4C16   730000 perm   362 sec   (2017 perm/sec)   p_kst 1.917808e-03   p_cons 1.695932e-01   p_joint 2.805479e-03

Joint ci ratio: 8.865342e-02	ci left: 2.518284e-03	ci right 2.753204e-03	k: 1949	n:740000
Cons ci ratio: 1.008529e-02	ci left: 1.686876e-01	ci right 1.703988e-01	k: 125461	n:740000
KS ci ratio: 1.041099e-01	ci left: 1.812589e-03	ci right 2.012964e-03	k: 1414	n:740000
OR4C16   740000 perm   370 sec   (2001 perm/sec)   p_kst 1.910811e-03   p_cons 1.695419e-01   p_joint 2.633784e-03

Joint ci ratio: 8.845057e-02	ci left: 2.496440e-03	ci right 2.728762e-03	k: 1958	n:750000
Cons ci ratio: 1.002141e-02	ci left: 1.685929e-01	ci right 1.702923e-01	k: 127081	n:750000
KS ci ratio: 1.033097e-01	ci left: 1.816994e-03	ci right 2.016218e-03	k: 1436	n:750000
OR4C16   750000 perm   378 sec   (1985 perm/sec)   p_kst 1.914667e-03   p_cons 1.694413e-01   p_joint 2.610667e-03

Joint ci ratio: 7.604469e-02	ci left: 3.351682e-03	ci right 3.617914e-03	k: 2647	n:760000
Cons ci ratio: 9.955092e-03	ci left: 1.686032e-01	ci right 1.702914e-01	k: 128779	n:760000
KS ci ratio: 1.027041e-01	ci left: 1.814878e-03	ci right 2.012634e-03	k: 1453	n:760000
OR4C16   760000 perm   386 sec   (1969 perm/sec)   p_kst 1.911842e-03   p_cons 1.694461e-01   p_joint 3.482895e-03

Joint ci ratio: 7.540616e-02	ci left: 3.365489e-03	ci right 3.630475e-03	k: 2692	n:770000
Cons ci ratio: 9.890487e-03	ci left: 1.686017e-01	ci right 1.702788e-01	k: 130468	n:770000
KS ci ratio: 1.016943e-01	ci left: 1.828008e-03	ci right 2.025119e-03	k: 1482	n:770000
OR4C16   770000 perm   394 sec   (1954 perm/sec)   p_kst 1.924675e-03   p_cons 1.694390e-01   p_joint 3.496104e-03

Joint ci ratio: 7.577580e-02	ci left: 3.289634e-03	ci right 3.549973e-03	k: 2666	n:780000
Cons ci ratio: 9.828512e-03	ci left: 1.685605e-01	ci right 1.702266e-01	k: 132126	n:780000
KS ci ratio: 1.010491e-01	ci left: 1.828314e-03	ci right 2.024133e-03	k: 1501	n:780000
OR4C16   780000 perm   402 sec   (1939 perm/sec)   p_kst 1.924359e-03   p_cons 1.693923e-01   p_joint 3.417949e-03

Joint ci ratio: 7.528339e-02	ci left: 3.291460e-03	ci right 3.550177e-03	k: 2701	n:790000
Cons ci ratio: 9.765754e-03	ci left: 1.685760e-01	ci right 1.702315e-01	k: 133828	n:790000
KS ci ratio: 1.005817e-01	ci left: 1.822445e-03	ci right 2.016679e-03	k: 1515	n:790000
OR4C16   790000 perm   410 sec   (1926 perm/sec)   p_kst 1.917722e-03   p_cons 1.694025e-01   p_joint 3.418987e-03

Joint ci ratio: 7.478674e-02	ci left: 3.294473e-03	ci right 3.551644e-03	k: 2737	n:800000
Cons ci ratio: 9.706468e-03	ci left: 1.685250e-01	ci right 1.701699e-01	k: 135477	n:800000
KS ci ratio: 9.992470e-02	ci left: 1.824038e-03	ci right 2.017097e-03	k: 1535	n:800000
OR4C16   800000 perm   418 sec   (1912 perm/sec)   p_kst 1.918750e-03   p_cons 1.693463e-01   p_joint 3.421250e-03

Outputting figure to mutsig2_images.part000000000121/OR4C16.15_935_800000_0.0019188_0.16935_0.0034212.png
                gene_name: OR4C16
               theta_stop: 0.100 
                    nperm: 800000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0033 
    ci_joint_bounds_right: 0.0036 

Current progress: 18 percent done.
OR4C46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
Cons ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
KS ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
OR4C46   10000 perm   2 sec   (5200 perm/sec)   p_kst 3.863000e-01   p_cons 3.642000e-01   p_joint 3.785000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C46.15_932_10000_0.3863_0.3642_0.3785.png
                gene_name: OR4C46
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 20 percent done.
OR2M4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
Cons ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
KS ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
OR2M4   10000 perm   2 sec   (5138 perm/sec)   p_kst 7.560000e-01   p_cons 8.670000e-01   p_joint 8.699000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M4.14_939_10000_0.756_0.867_0.8699.png
                gene_name: OR2M4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 21 percent done.
OR2AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
Cons ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
OR2AK2   10000 perm   2 sec   (5736 perm/sec)   p_kst 4.559000e-01   p_cons 9.166000e-01   p_joint 8.324000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AK2.13_1011_10000_0.4559_0.9166_0.8324.png
                gene_name: OR2AK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 22 percent done.
OR2G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
Cons ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
KS ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
OR2G3   10000 perm   2 sec   (5362 perm/sec)   p_kst 3.751000e-01   p_cons 5.256000e-01   p_joint 4.916000e-01

Outputting figure to mutsig2_images.part000000000121/OR2G3.13_933_10000_0.3751_0.5256_0.4916.png
                gene_name: OR2G3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 23 percent done.
OR2M5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
OR2M5   10000 perm   2 sec   (5801 perm/sec)   p_kst 5.826000e-01   p_cons 1.761000e-01   p_joint 3.581000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M5.13_942_10000_0.5826_0.1761_0.3581.png
                gene_name: OR2M5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 24 percent done.
OR2T12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
Cons ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
KS ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
OR2T12   10000 perm   2 sec   (5576 perm/sec)   p_kst 5.079000e-01   p_cons 2.923000e-01   p_joint 5.910000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T12.13_966_10000_0.5079_0.2923_0.591.png
                gene_name: OR2T12
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 26 percent done.
OR2T27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
OR2T27   10000 perm   2 sec   (5520 perm/sec)   p_kst 1.912000e-01   p_cons 1.115000e-01   p_joint 1.340000e-01

Joint ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
Cons ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
KS ci ratio: 5.705493e-02	ci left: 1.854735e-01	ci right 1.964165e-01	k: 3818	n:20000
OR2T27   20000 perm   4 sec   (4999 perm/sec)   p_kst 1.909000e-01   p_cons 1.115000e-01   p_joint 1.137000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T27.13_957_20000_0.1909_0.1115_0.1137.png
                gene_name: OR2T27
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
OR2T34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
OR2T34   10000 perm   2 sec   (5518 perm/sec)   p_kst 1.330000e-02   p_cons 6.369000e-01   p_joint 5.770000e-02

Joint ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
Cons ci ratio: 2.064164e-02	ci left: 6.365655e-01	ci right 6.498928e-01	k: 12865	n:20000
KS ci ratio: 2.448786e-01	ci left: 1.110033e-02	ci right 1.424373e-02	k: 252	n:20000
OR2T34   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.260000e-02   p_cons 6.432500e-01   p_joint 1.013000e-01

Joint ci ratio: 9.084778e-02	ci left: 5.577265e-02	ci right 6.111327e-02	k: 1752	n:30000
Cons ci ratio: 1.679475e-02	ci left: 6.394209e-01	ci right 6.502843e-01	k: 19346	n:30000
KS ci ratio: 2.011555e-01	ci left: 1.124182e-02	ci right 1.378722e-02	k: 374	n:30000
OR2T34   30000 perm   7 sec   (4481 perm/sec)   p_kst 1.246667e-02   p_cons 6.448667e-01   p_joint 5.840000e-02

Joint ci ratio: 9.215654e-02	ci left: 4.127725e-02	ci right 4.528940e-02	k: 1730	n:40000
Cons ci ratio: 1.485074e-02	ci left: 6.305356e-01	ci right 6.399947e-01	k: 25411	n:40000
KS ci ratio: 1.772839e-01	ci left: 1.100379e-02	ci right 1.316791e-02	k: 482	n:40000
OR2T34   40000 perm   9 sec   (4419 perm/sec)   p_kst 1.205000e-02   p_cons 6.352750e-01   p_joint 4.325000e-02

Joint ci ratio: 9.282289e-02	ci left: 3.283913e-02	ci right 3.605522e-02	k: 1721	n:50000
Cons ci ratio: 1.324787e-02	ci left: 6.322660e-01	ci right 6.407181e-01	k: 31825	n:50000
KS ci ratio: 1.584020e-01	ci left: 1.114087e-02	ci right 1.307640e-02	k: 604	n:50000
OR2T34   50000 perm   11 sec   (4361 perm/sec)   p_kst 1.208000e-02   p_cons 6.365000e-01   p_joint 3.442000e-02

Joint ci ratio: 9.564471e-02	ci left: 2.592928e-02	ci right 2.855005e-02	k: 1633	n:60000
Cons ci ratio: 1.212414e-02	ci left: 6.314671e-01	ci right 6.391865e-01	k: 38120	n:60000
KS ci ratio: 1.439997e-01	ci left: 1.132086e-02	ci right 1.309346e-02	k: 731	n:60000
OR2T34   60000 perm   14 sec   (4295 perm/sec)   p_kst 1.218333e-02   p_cons 6.353333e-01   p_joint 2.721667e-02

Joint ci ratio: 8.962702e-02	ci left: 2.540651e-02	ci right 2.780438e-02	k: 1861	n:70000
Cons ci ratio: 1.122318e-02	ci left: 6.318217e-01	ci right 6.389671e-01	k: 44478	n:70000
KS ci ratio: 1.338745e-01	ci left: 1.128939e-02	ci right 1.292286e-02	k: 846	n:70000
OR2T34   70000 perm   17 sec   (4229 perm/sec)   p_kst 1.208571e-02   p_cons 6.354000e-01   p_joint 2.658571e-02

Joint ci ratio: 8.082540e-02	ci left: 2.740684e-02	ci right 2.972751e-02	k: 2284	n:80000
Cons ci ratio: 1.050118e-02	ci left: 6.319283e-01	ci right 6.386118e-01	k: 50822	n:80000
KS ci ratio: 1.257553e-01	ci left: 1.124485e-02	ci right 1.276584e-02	k: 959	n:80000
OR2T34   80000 perm   19 sec   (4116 perm/sec)   p_kst 1.198750e-02   p_cons 6.352750e-01   p_joint 2.855000e-02

Joint ci ratio: 7.741459e-02	ci left: 2.662661e-02	ci right 2.878176e-02	k: 2492	n:90000
Cons ci ratio: 9.929538e-03	ci left: 6.307651e-01	ci right 6.370707e-01	k: 57053	n:90000
KS ci ratio: 1.183417e-01	ci left: 1.133119e-02	ci right 1.276718e-02	k: 1083	n:90000
OR2T34   90000 perm   22 sec   (4057 perm/sec)   p_kst 1.203333e-02   p_cons 6.339222e-01   p_joint 2.768889e-02

Joint ci ratio: 6.864515e-02	ci left: 3.049488e-02	ci right 3.267240e-02	k: 3157	n:100000
Cons ci ratio: 9.238183e-03	ci left: 6.399412e-01	ci right 6.458905e-01	k: 64292	n:100000
KS ci ratio: 1.129564e-01	ci left: 1.122738e-02	ci right 1.258115e-02	k: 1189	n:100000
OR2T34   100000 perm   25 sec   (3995 perm/sec)   p_kst 1.189000e-02   p_cons 6.429200e-01   p_joint 3.157000e-02

Joint ci ratio: 6.628069e-02	ci left: 2.979577e-02	ci right 3.184725e-02	k: 3389	n:110000
Cons ci ratio: 8.808827e-03	ci left: 6.400511e-01	ci right 6.457232e-01	k: 70718	n:110000
KS ci ratio: 1.078667e-01	ci left: 1.122330e-02	ci right 1.251172e-02	k: 1304	n:110000
OR2T34   110000 perm   28 sec   (3930 perm/sec)   p_kst 1.185455e-02   p_cons 6.428909e-01   p_joint 3.080909e-02

Joint ci ratio: 6.588997e-02	ci left: 2.770518e-02	ci right 2.960103e-02	k: 3437	n:120000
Cons ci ratio: 8.431659e-03	ci left: 6.402900e-01	ci right 6.457198e-01	k: 77161	n:120000
KS ci ratio: 1.033714e-01	ci left: 1.122916e-02	ci right 1.246126e-02	k: 1420	n:120000
OR2T34   120000 perm   31 sec   (3868 perm/sec)   p_kst 1.183333e-02   p_cons 6.430083e-01   p_joint 2.864167e-02

Joint ci ratio: 6.393968e-02	ci left: 2.720078e-02	ci right 2.900497e-02	k: 3652	n:130000
Cons ci ratio: 8.098855e-03	ci left: 6.405118e-01	ci right 6.457280e-01	k: 83606	n:130000
KS ci ratio: 9.890781e-02	ci left: 1.134762e-02	ci right 1.253584e-02	k: 1551	n:130000
OR2T34   130000 perm   34 sec   (3812 perm/sec)   p_kst 1.193077e-02   p_cons 6.431231e-01   p_joint 2.809231e-02

Outputting figure to mutsig2_images.part000000000121/OR2T34.13_961_130000_0.011931_0.64312_0.028092.png
                gene_name: OR2T34
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 28 percent done.
OR2T6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
Cons ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
KS ci ratio: 1.752183e-02	ci left: 8.260517e-01	ci right 8.407535e-01	k: 8335	n:10000
OR2T6   10000 perm   2 sec   (4880 perm/sec)   p_kst 8.335000e-01   p_cons 6.501000e-01   p_joint 9.178000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T6.13_931_10000_0.8335_0.6501_0.9178.png
                gene_name: OR2T6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 29 percent done.
OR4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
Cons ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
OR4A5   10000 perm   2 sec   (5417 perm/sec)   p_kst 2.732000e-01   p_cons 6.280000e-01   p_joint 4.185000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A5.13_952_10000_0.2732_0.628_0.4185.png
                gene_name: OR4A5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 30 percent done.
OR2W5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.538307e-02	ci left: 4.174770e-01	ci right 4.369654e-01	k: 4272	n:10000
Cons ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
KS ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
OR2W5   10000 perm   2 sec   (6038 perm/sec)   p_kst 1.803000e-01   p_cons 8.519000e-01   p_joint 4.272000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W5.12_967_10000_0.1803_0.8519_0.4272.png
                gene_name: OR2W5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 32 percent done.
OR4C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
Cons ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
KS ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
OR4C6   10000 perm   2 sec   (5629 perm/sec)   p_kst 1.811000e-01   p_cons 1.701000e-01   p_joint 1.921000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C6.12_932_10000_0.1811_0.1701_0.1921.png
                gene_name: OR4C6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
OR4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
Cons ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
OR4K1   10000 perm   2 sec   (5643 perm/sec)   p_kst 3.889000e-01   p_cons 5.803000e-01   p_joint 6.145000e-01

Outputting figure to mutsig2_images.part000000000121/OR4K1.12_940_10000_0.3889_0.5803_0.6145.png
                gene_name: OR4K1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 34 percent done.
OR2T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
OR2T3   10000 perm   2 sec   (5450 perm/sec)   p_kst 4.627000e-01   p_cons 1.279000e-01   p_joint 3.997000e-01

Joint ci ratio: 4.678674e-02	ci left: 2.536831e-01	ci right 2.658868e-01	k: 5195	n:20000
Cons ci ratio: 6.983390e-02	ci left: 1.313267e-01	ci right 1.408794e-01	k: 2721	n:20000
KS ci ratio: 3.013582e-02	ci left: 4.513262e-01	ci right 4.651860e-01	k: 9165	n:20000
OR2T3   20000 perm   4 sec   (4918 perm/sec)   p_kst 4.582500e-01   p_cons 1.360500e-01   p_joint 2.597500e-01

Outputting figure to mutsig2_images.part000000000121/OR2T3.11_961_20000_0.45825_0.13605_0.25975.png
                gene_name: OR2T3
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 35 percent done.
OR4A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
OR4A16   10000 perm   2 sec   (5024 perm/sec)   p_kst 1.754000e-01   p_cons 3.900000e-02   p_joint 6.810000e-02

Joint ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 5.942286e-02	ci left: 1.733632e-01	ci right 1.840304e-01	k: 3573	n:20000
OR4A16   20000 perm   4 sec   (4843 perm/sec)   p_kst 1.786500e-01   p_cons 4.000000e-02   p_joint 9.455000e-02

Joint ci ratio: 9.435682e-02	ci left: 5.182750e-02	ci right 5.699256e-02	k: 1631	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 4.843631e-02	ci left: 1.748417e-01	ci right 1.835539e-01	k: 5375	n:30000
OR4A16   30000 perm   6 sec   (4711 perm/sec)   p_kst 1.791667e-01   p_cons 3.980000e-02   p_joint 5.436667e-02

Joint ci ratio: 8.243937e-02	ci left: 5.129023e-02	ci right 5.572487e-02	k: 2139	n:40000
Cons ci ratio: 9.652272e-02	ci left: 3.768543e-02	ci right 4.153177e-02	k: 1583	n:40000
KS ci ratio: 4.193648e-02	ci left: 1.755020e-01	ci right 1.830446e-01	k: 7170	n:40000
OR4A16   40000 perm   9 sec   (4597 perm/sec)   p_kst 1.792500e-01   p_cons 3.957500e-02   p_joint 5.347500e-02

Outputting figure to mutsig2_images.part000000000121/OR4A16.11_989_40000_0.17925_0.039575_0.053475.png
                gene_name: OR4A16
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.056 

Current progress: 37 percent done.
OR2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
Cons ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
KS ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
OR2B11   10000 perm   2 sec   (6270 perm/sec)   p_kst 3.392000e-01   p_cons 7.626000e-01   p_joint 6.605000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B11.10_957_10000_0.3392_0.7626_0.6605.png
                gene_name: OR2B11
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 38 percent done.
OR2T8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
Cons ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
OR2T8   10000 perm   2 sec   (5639 perm/sec)   p_kst 7.950000e-02   p_cons 5.263000e-01   p_joint 4.161000e-01

Joint ci ratio: 6.007885e-02	ci left: 1.702012e-01	ci right 1.807934e-01	k: 3509	n:20000
Cons ci ratio: 2.561487e-02	ci left: 5.324117e-01	ci right 5.462769e-01	k: 10787	n:20000
KS ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
OR2T8   20000 perm   4 sec   (5075 perm/sec)   p_kst 8.140000e-02   p_cons 5.393500e-01   p_joint 1.754500e-01

Outputting figure to mutsig2_images.part000000000121/OR2T8.10_941_20000_0.0814_0.53935_0.17545.png
                gene_name: OR2T8
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 39 percent done.
OR2A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
KS ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
OR2A5   10000 perm   2 sec   (5453 perm/sec)   p_kst 1.105000e-01   p_cons 1.425000e-01   p_joint 6.190000e-02

Joint ci ratio: 8.600185e-02	ci left: 9.003879e-02	ci right 9.817966e-02	k: 1881	n:20000
Cons ci ratio: 6.742984e-02	ci left: 1.396541e-01	ci right 1.494494e-01	k: 2890	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
OR2A5   20000 perm   4 sec   (4916 perm/sec)   p_kst 1.066500e-01   p_cons 1.445000e-01   p_joint 9.405000e-02

Outputting figure to mutsig2_images.part000000000121/OR2A5.9_939_20000_0.10665_0.1445_0.09405.png
                gene_name: OR2A5
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 40 percent done.
OR2J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
Cons ci ratio: 3.102546e-02	ci left: 6.051797e-01	ci right 6.243534e-01	k: 6148	n:10000
KS ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
OR2J2   10000 perm   2 sec   (5703 perm/sec)   p_kst 2.242000e-01   p_cons 6.148000e-01   p_joint 3.848000e-01

Outputting figure to mutsig2_images.part000000000121/OR2J2.9_942_10000_0.2242_0.6148_0.3848.png
                gene_name: OR2J2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 41 percent done.
OR2T11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.090944e-02	ci left: 1.823522e-01	ci right 1.978288e-01	k: 1900	n:10000
Cons ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
KS ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
OR2T11   10000 perm   2 sec   (5592 perm/sec)   p_kst 7.970000e-02   p_cons 8.754000e-01   p_joint 1.900000e-01

Joint ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
Cons ci ratio: 1.100046e-02	ci left: 8.591206e-01	ci right 8.686733e-01	k: 17279	n:20000
KS ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
OR2T11   20000 perm   4 sec   (5033 perm/sec)   p_kst 8.615000e-02   p_cons 8.639500e-01   p_joint 1.733000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T11.9_955_20000_0.08615_0.86395_0.1733.png
                gene_name: OR2T11
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
OR4C12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
Cons ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
KS ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
OR4C12   10000 perm   2 sec   (5717 perm/sec)   p_kst 3.381000e-01   p_cons 4.195000e-01   p_joint 4.616000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C12.9_934_10000_0.3381_0.4195_0.4616.png
                gene_name: OR4C12
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 44 percent done.
OR4C13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.231198e-02	ci left: 7.467503e-01	ci right 7.637008e-01	k: 7553	n:10000
KS ci ratio: 1.006689e-02	ci left: 9.333016e-01	ci right 9.428413e-01	k: 9382	n:10000
OR4C13   10000 perm   2 sec   (5891 perm/sec)   p_kst 9.382000e-01   p_cons 7.553000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4C13.9_934_10000_0.9382_0.7553_1.png
                gene_name: OR4C13
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
OR4D10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
OR4D10   10000 perm   2 sec   (5674 perm/sec)   p_kst 1.174000e-01   p_cons 1.383000e-01   p_joint 1.314000e-01

Joint ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
Cons ci ratio: 6.996785e-02	ci left: 1.308834e-01	ci right 1.404228e-01	k: 2712	n:20000
KS ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
OR4D10   20000 perm   4 sec   (5079 perm/sec)   p_kst 1.201000e-01   p_cons 1.356000e-01   p_joint 1.115000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D10.9_940_20000_0.1201_0.1356_0.1115.png
                gene_name: OR4D10
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 46 percent done.
OR4D6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
Cons ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
KS ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
OR4D6   10000 perm   2 sec   (5346 perm/sec)   p_kst 2.566000e-01   p_cons 3.757000e-01   p_joint 3.376000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D6.9_948_10000_0.2566_0.3757_0.3376.png
                gene_name: OR4D6
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 48 percent done.
OR2T10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
Cons ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
KS ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
OR2T10   10000 perm   2 sec   (5701 perm/sec)   p_kst 7.776000e-01   p_cons 3.284000e-01   p_joint 5.484000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T10.8_942_10000_0.7776_0.3284_0.5484.png
                gene_name: OR2T10
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 49 percent done.
OR4C11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
OR4C11   10000 perm   2 sec   (5738 perm/sec)   p_kst 8.414000e-01   p_cons 4.130000e-02   p_joint 1.199000e-01

Joint ci ratio: 6.545699e-02	ci left: 1.470502e-01	ci right 1.570512e-01	k: 3040	n:20000
Cons ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
KS ci ratio: 1.202819e-02	ci left: 8.364146e-01	ci right 8.465859e-01	k: 16831	n:20000
OR4C11   20000 perm   4 sec   (5170 perm/sec)   p_kst 8.415500e-01   p_cons 3.875000e-02   p_joint 1.520000e-01

Joint ci ratio: 5.692268e-02	ci left: 1.326008e-01	ci right 1.404031e-01	k: 4094	n:30000
Cons ci ratio: 1.119459e-01	ci left: 3.706442e-02	ci right 4.149204e-02	k: 1177	n:30000
KS ci ratio: 9.837365e-03	ci left: 8.369135e-01	ci right 8.452204e-01	k: 25233	n:30000
OR4C11   30000 perm   6 sec   (4934 perm/sec)   p_kst 8.411000e-01   p_cons 3.923333e-02   p_joint 1.364667e-01

Joint ci ratio: 4.804534e-02	ci left: 1.392364e-01	ci right 1.461156e-01	k: 5706	n:40000
Cons ci ratio: 9.988648e-02	ci left: 3.522014e-02	ci right 3.894745e-02	k: 1482	n:40000
KS ci ratio: 8.563110e-03	ci left: 8.360927e-01	ci right 8.433079e-01	k: 33589	n:40000
OR4C11   40000 perm   8 sec   (4778 perm/sec)   p_kst 8.397250e-01   p_cons 3.705000e-02   p_joint 1.426500e-01

Outputting figure to mutsig2_images.part000000000121/OR4C11.8_935_40000_0.83973_0.03705_0.14265.png
                gene_name: OR4C11
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
OR2AG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
Cons ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
OR2AG2   10000 perm   2 sec   (5610 perm/sec)   p_kst 6.013000e-01   p_cons 4.541000e-01   p_joint 7.295000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AG2.7_955_10000_0.6013_0.4541_0.7295.png
                gene_name: OR2AG2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 51 percent done.
OR2B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
Cons ci ratio: 9.000262e-03	ci left: 9.455455e-01	ci right 9.541901e-01	k: 9500	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
OR2B6   10000 perm   2 sec   (5683 perm/sec)   p_kst 2.241000e-01   p_cons 9.500000e-01   p_joint 4.016000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B6.7_944_10000_0.2241_0.95_0.4016.png
                gene_name: OR2B6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
OR2L13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
OR2L13   10000 perm   2 sec   (6389 perm/sec)   p_kst 6.280000e-02   p_cons 2.847000e-01   p_joint 5.640000e-02

Joint ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
Cons ci ratio: 4.505126e-02	ci left: 2.683730e-01	ci right 2.807926e-01	k: 5491	n:20000
KS ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
OR2L13   20000 perm   4 sec   (5666 perm/sec)   p_kst 6.070000e-02   p_cons 2.745500e-01   p_joint 7.715000e-02

Joint ci ratio: 7.720370e-02	ci left: 7.607011e-02	ci right 8.221169e-02	k: 2373	n:30000
Cons ci ratio: 3.672282e-02	ci left: 2.701846e-01	ci right 2.803256e-01	k: 8257	n:30000
KS ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
OR2L13   30000 perm   6 sec   (5383 perm/sec)   p_kst 6.010000e-02   p_cons 2.752333e-01   p_joint 7.910000e-02

Outputting figure to mutsig2_images.part000000000121/OR2L13.7_943_30000_0.0601_0.27523_0.0791.png
                gene_name: OR2L13
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 54 percent done.
OR2T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
Cons ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
KS ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
OR2T1   10000 perm   2 sec   (6233 perm/sec)   p_kst 7.317000e-01   p_cons 4.359000e-01   p_joint 8.111000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T1.7_1113_10000_0.7317_0.4359_0.8111.png
                gene_name: OR2T1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 55 percent done.
OR2T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
OR2T2   10000 perm   2 sec   (6124 perm/sec)   p_kst 1.170000e-02   p_cons 3.460000e-01   p_joint 2.830000e-02

Joint ci ratio: 1.185293e-01	ci left: 4.876885e-02	ci right 5.496225e-02	k: 1036	n:20000
Cons ci ratio: 3.871410e-02	ci left: 3.322891e-01	ci right 3.454578e-01	k: 6777	n:20000
KS ci ratio: 2.515060e-01	ci left: 1.049034e-02	ci right 1.355399e-02	k: 239	n:20000
OR2T2   20000 perm   4 sec   (5453 perm/sec)   p_kst 1.195000e-02   p_cons 3.388500e-01   p_joint 5.180000e-02

Joint ci ratio: 1.281039e-01	ci left: 2.832467e-02	ci right 3.223367e-02	k: 907	n:30000
Cons ci ratio: 3.142273e-02	ci left: 3.361660e-01	ci right 3.469314e-01	k: 10246	n:30000
KS ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
OR2T2   30000 perm   6 sec   (5181 perm/sec)   p_kst 1.263333e-02   p_cons 3.415333e-01   p_joint 3.023333e-02

Joint ci ratio: 1.207994e-01	ci left: 2.409850e-02	ci right 2.722087e-02	k: 1025	n:40000
Cons ci ratio: 2.724265e-02	ci left: 3.364035e-01	ci right 3.457196e-01	k: 13642	n:40000
KS ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
OR2T2   40000 perm   8 sec   (5001 perm/sec)   p_kst 1.310000e-02   p_cons 3.410500e-01   p_joint 2.562500e-02

Joint ci ratio: 1.023150e-01	ci left: 2.705892e-02	ci right 2.999616e-02	k: 1425	n:50000
Cons ci ratio: 2.381397e-02	ci left: 3.472540e-01	ci right 3.556432e-01	k: 17572	n:50000
KS ci ratio: 1.500831e-01	ci left: 1.244901e-02	ci right 1.448805e-02	k: 672	n:50000
OR2T2   50000 perm   10 sec   (4871 perm/sec)   p_kst 1.344000e-02   p_cons 3.514400e-01   p_joint 2.850000e-02

Joint ci ratio: 8.811251e-02	ci left: 3.052452e-02	ci right 3.335433e-02	k: 1915	n:60000
Cons ci ratio: 2.173717e-02	ci left: 3.476621e-01	ci right 3.553190e-01	k: 21089	n:60000
KS ci ratio: 1.377520e-01	ci left: 1.239864e-02	ci right 1.424888e-02	k: 798	n:60000
OR2T2   60000 perm   13 sec   (4757 perm/sec)   p_kst 1.330000e-02   p_cons 3.514833e-01   p_joint 3.191667e-02

Joint ci ratio: 7.566276e-02	ci left: 3.552958e-02	ci right 3.833754e-02	k: 2584	n:70000
Cons ci ratio: 2.007248e-02	ci left: 3.491309e-01	ci right 3.562242e-01	k: 24687	n:70000
KS ci ratio: 1.273378e-01	ci left: 1.250596e-02	ci right 1.422045e-02	k: 934	n:70000
OR2T2   70000 perm   15 sec   (4657 perm/sec)   p_kst 1.334286e-02   p_cons 3.526714e-01   p_joint 3.691429e-02

Joint ci ratio: 7.506719e-02	ci left: 3.172375e-02	ci right 3.421027e-02	k: 2636	n:80000
Cons ci ratio: 1.879762e-02	ci left: 3.488393e-01	ci right 3.554714e-01	k: 28172	n:80000
KS ci ratio: 1.195437e-01	ci left: 1.246909e-02	ci right 1.406649e-02	k: 1060	n:80000
OR2T2   80000 perm   18 sec   (4565 perm/sec)   p_kst 1.325000e-02   p_cons 3.521500e-01   p_joint 3.295000e-02

Joint ci ratio: 7.150798e-02	ci left: 3.115449e-02	ci right 3.347578e-02	k: 2907	n:90000
Cons ci ratio: 1.770300e-02	ci left: 3.495332e-01	ci right 3.557874e-01	k: 31739	n:90000
KS ci ratio: 1.125458e-01	ci left: 1.255094e-02	ci right 1.405845e-02	k: 1196	n:90000
OR2T2   90000 perm   20 sec   (4474 perm/sec)   p_kst 1.328889e-02   p_cons 3.526556e-01   p_joint 3.230000e-02

Joint ci ratio: 7.169080e-02	ci left: 2.798827e-02	ci right 3.007916e-02	k: 2902	n:100000
Cons ci ratio: 1.677200e-02	ci left: 3.503068e-01	ci right 3.562418e-01	k: 35327	n:100000
KS ci ratio: 1.069334e-01	ci left: 1.255045e-02	ci right 1.397799e-02	k: 1325	n:100000
OR2T2   100000 perm   23 sec   (4386 perm/sec)   p_kst 1.325000e-02   p_cons 3.532700e-01   p_joint 2.902000e-02

Joint ci ratio: 6.856822e-02	ci left: 2.786426e-02	ci right 2.985159e-02	k: 3173	n:110000
Cons ci ratio: 1.597806e-02	ci left: 3.508285e-01	ci right 3.564883e-01	k: 38902	n:110000
KS ci ratio: 1.023346e-01	ci left: 1.248955e-02	ci right 1.384539e-02	k: 1447	n:110000
OR2T2   110000 perm   26 sec   (4300 perm/sec)   p_kst 1.315455e-02   p_cons 3.536545e-01   p_joint 2.884545e-02

Joint ci ratio: 6.203812e-02	ci left: 3.120014e-02	ci right 3.320588e-02	k: 3863	n:120000
Cons ci ratio: 1.570146e-02	ci left: 3.391576e-01	ci right 3.445333e-01	k: 41021	n:120000
KS ci ratio: 9.752959e-02	ci left: 1.263507e-02	ci right 1.393861e-02	k: 1593	n:120000
OR2T2   120000 perm   28 sec   (4224 perm/sec)   p_kst 1.327500e-02   p_cons 3.418417e-01   p_joint 3.219167e-02

Outputting figure to mutsig2_images.part000000000121/OR2T2.7_979_120000_0.013275_0.34184_0.032192.png
                gene_name: OR2T2
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 56 percent done.
OR2V2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
Cons ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
KS ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
OR2V2   10000 perm   2 sec   (5778 perm/sec)   p_kst 5.991000e-01   p_cons 3.620000e-01   p_joint 7.310000e-01

Outputting figure to mutsig2_images.part000000000121/OR2V2.7_951_10000_0.5991_0.362_0.731.png
                gene_name: OR2V2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 57 percent done.
OR4A47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
Cons ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
KS ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
OR4A47   10000 perm   2 sec   (6056 perm/sec)   p_kst 4.061000e-01   p_cons 3.192000e-01   p_joint 3.587000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A47.7_932_10000_0.4061_0.3192_0.3587.png
                gene_name: OR4A47
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 59 percent done.
OR4C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
OR4C3   10000 perm   2 sec   (5721 perm/sec)   p_kst 7.994000e-01   p_cons 5.331000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C3.7_992_10000_0.7994_0.5331_0.8719.png
                gene_name: OR4C3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 60 percent done.
OR4D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
KS ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
OR4D2   10000 perm   2 sec   (6041 perm/sec)   p_kst 9.537000e-01   p_cons 8.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4D2.7_927_10000_0.9537_0.8993_1.png
                gene_name: OR4D2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
OR4K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
Cons ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
KS ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
OR4K15   10000 perm   2 sec   (5327 perm/sec)   p_kst 1.364000e-01   p_cons 5.061000e-01   p_joint 3.833000e-01

Outputting figure to mutsig2_images.part000000000121/OR4K15.7_1049_10000_0.1364_0.5061_0.3833.png
                gene_name: OR4K15
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
OR2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257878e-02	ci left: 9.008303e-01	ci right 9.123316e-01	k: 9067	n:10000
Cons ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
KS ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
OR2D3   10000 perm   2 sec   (6064 perm/sec)   p_kst 7.319000e-01   p_cons 6.810000e-01   p_joint 9.067000e-01

Outputting figure to mutsig2_images.part000000000121/OR2D3.6_996_10000_0.7319_0.681_0.9067.png
                gene_name: OR2D3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 63 percent done.
OR2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
OR2F2   10000 perm   2 sec   (5764 perm/sec)   p_kst 7.510000e-01   p_cons 6.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2F2.6_957_10000_0.751_0.6882_1.png
                gene_name: OR2F2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
OR4D11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
OR4D11   10000 perm   2 sec   (5807 perm/sec)   p_kst 9.417000e-01   p_cons 3.562000e-01   p_joint 6.392000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D11.6_940_10000_0.9417_0.3562_0.6392.png
                gene_name: OR4D11
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 66 percent done.
OR4D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
Cons ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
OR4D9   10000 perm   2 sec   (5905 perm/sec)   p_kst 5.700000e-03   p_cons 5.814000e-01   p_joint 1.570000e-02

Joint ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
Cons ci ratio: 2.418676e-02	ci left: 5.607999e-01	ci right 5.745804e-01	k: 11354	n:20000
KS ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
OR4D9   20000 perm   4 sec   (5322 perm/sec)   p_kst 6.350000e-03   p_cons 5.677000e-01   p_joint 1.815000e-02

Joint ci ratio: 1.531652e-01	ci left: 1.972808e-02	ci right 2.303218e-02	k: 640	n:30000
Cons ci ratio: 1.977430e-02	ci left: 5.614369e-01	ci right 5.726834e-01	k: 17012	n:30000
KS ci ratio: 2.827322e-01	ci left: 5.467054e-03	ci right 7.297185e-03	k: 190	n:30000
OR4D9   30000 perm   6 sec   (5083 perm/sec)   p_kst 6.333333e-03   p_cons 5.670667e-01   p_joint 2.133333e-02

Joint ci ratio: 1.433544e-01	ci left: 1.703317e-02	ci right 1.968741e-02	k: 733	n:40000
Cons ci ratio: 1.708051e-02	ci left: 5.634788e-01	ci right 5.732113e-01	k: 22734	n:40000
KS ci ratio: 2.432572e-01	ci left: 5.665515e-03	ci right 7.257410e-03	k: 257	n:40000
OR4D9   40000 perm   8 sec   (4937 perm/sec)   p_kst 6.425000e-03   p_cons 5.683500e-01   p_joint 1.832500e-02

Joint ci ratio: 1.357639e-01	ci left: 1.528556e-02	ci right 1.753109e-02	k: 819	n:50000
Cons ci ratio: 1.524407e-02	ci left: 5.650659e-01	ci right 5.737660e-01	k: 28471	n:50000
KS ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
OR4D9   50000 perm   10 sec   (4811 perm/sec)   p_kst 6.680000e-03   p_cons 5.694200e-01   p_joint 1.638000e-02

Joint ci ratio: 1.002834e-01	ci left: 2.358659e-02	ci right 2.609299e-02	k: 1489	n:60000
Cons ci ratio: 1.390373e-02	ci left: 5.658768e-01	ci right 5.738164e-01	k: 34191	n:60000
KS ci ratio: 1.948542e-01	ci left: 6.047004e-03	ci right 7.368056e-03	k: 401	n:60000
OR4D9   60000 perm   13 sec   (4703 perm/sec)   p_kst 6.683333e-03   p_cons 5.698500e-01   p_joint 2.481667e-02

Joint ci ratio: 9.190897e-02	ci left: 2.416322e-02	ci right 2.650492e-02	k: 1772	n:70000
Cons ci ratio: 1.288759e-02	ci left: 5.655932e-01	ci right 5.729439e-01	k: 39849	n:70000
KS ci ratio: 1.788706e-01	ci left: 6.204576e-03	ci right 7.436839e-03	k: 476	n:70000
OR4D9   70000 perm   15 sec   (4603 perm/sec)   p_kst 6.800000e-03   p_cons 5.692714e-01   p_joint 2.531429e-02

Joint ci ratio: 8.752055e-02	ci left: 2.339082e-02	ci right 2.554386e-02	k: 1956	n:80000
Cons ci ratio: 1.209455e-02	ci left: 5.642335e-01	ci right 5.711116e-01	k: 45414	n:80000
KS ci ratio: 1.681186e-01	ci left: 6.182325e-03	ci right 7.328885e-03	k: 539	n:80000
OR4D9   80000 perm   18 sec   (4503 perm/sec)   p_kst 6.737500e-03   p_cons 5.676750e-01   p_joint 2.445000e-02

Joint ci ratio: 8.640925e-02	ci left: 2.138869e-02	ci right 2.333115e-02	k: 2011	n:90000
Cons ci ratio: 1.141727e-02	ci left: 5.638108e-01	ci right 5.702960e-01	k: 51035	n:90000
KS ci ratio: 1.589655e-01	ci left: 6.177421e-03	ci right 7.254743e-03	k: 603	n:90000
OR4D9   90000 perm   20 sec   (4417 perm/sec)   p_kst 6.700000e-03   p_cons 5.670556e-01   p_joint 2.234444e-02

Joint ci ratio: 8.916782e-02	ci left: 1.811389e-02	ci right 1.981417e-02	k: 1895	n:100000
Cons ci ratio: 1.084210e-02	ci left: 5.634917e-01	ci right 5.696444e-01	k: 56657	n:100000
KS ci ratio: 1.519648e-01	ci left: 6.107494e-03	ci right 7.121442e-03	k: 660	n:100000
OR4D9   100000 perm   23 sec   (4335 perm/sec)   p_kst 6.600000e-03   p_cons 5.665700e-01   p_joint 1.895000e-02

Joint ci ratio: 8.120339e-02	ci left: 1.990236e-02	ci right 2.159576e-02	k: 2281	n:110000
Cons ci ratio: 1.035185e-02	ci left: 5.629557e-01	ci right 5.688227e-01	k: 62248	n:110000
KS ci ratio: 1.444038e-01	ci left: 6.173815e-03	ci right 7.143380e-03	k: 731	n:110000
OR4D9   110000 perm   26 sec   (4259 perm/sec)   p_kst 6.645455e-03   p_cons 5.658909e-01   p_joint 2.073636e-02

Joint ci ratio: 7.805839e-02	ci left: 1.977925e-02	ci right 2.139403e-02	k: 2469	n:120000
Cons ci ratio: 9.902229e-03	ci left: 5.635236e-01	ci right 5.691398e-01	k: 67960	n:120000
KS ci ratio: 1.372686e-01	ci left: 6.286461e-03	ci right 7.220948e-03	k: 809	n:120000
OR4D9   120000 perm   29 sec   (4187 perm/sec)   p_kst 6.741667e-03   p_cons 5.663333e-01   p_joint 2.057500e-02

Joint ci ratio: 7.980100e-02	ci left: 1.749535e-02	ci right 1.895702e-02	k: 2368	n:130000
Cons ci ratio: 9.521262e-03	ci left: 5.632466e-01	ci right 5.686427e-01	k: 73573	n:130000
KS ci ratio: 1.326850e-01	ci left: 6.226532e-03	ci right 7.118765e-03	k: 866	n:130000
OR4D9   130000 perm   32 sec   (4119 perm/sec)   p_kst 6.661538e-03   p_cons 5.659462e-01   p_joint 1.821538e-02

Joint ci ratio: 8.028591e-02	ci left: 1.607021e-02	ci right 1.742134e-02	k: 2343	n:140000
Cons ci ratio: 9.177387e-03	ci left: 5.632131e-01	ci right 5.684128e-01	k: 79214	n:140000
KS ci ratio: 1.282527e-01	ci left: 6.203269e-03	ci right 7.060214e-03	k: 927	n:140000
OR4D9   140000 perm   35 sec   (4052 perm/sec)   p_kst 6.621429e-03   p_cons 5.658143e-01   p_joint 1.673571e-02

Joint ci ratio: 7.200932e-02	ci left: 1.867523e-02	ci right 2.007677e-02	k: 2905	n:150000
Cons ci ratio: 8.867183e-03	ci left: 5.632471e-01	ci right 5.682704e-01	k: 84864	n:150000
KS ci ratio: 1.242367e-01	ci left: 6.183539e-03	ci right 7.009041e-03	k: 988	n:150000
OR4D9   150000 perm   38 sec   (3985 perm/sec)   p_kst 6.586667e-03   p_cons 5.657600e-01   p_joint 1.936667e-02

Joint ci ratio: 6.903027e-02	ci left: 1.907381e-02	ci right 2.044367e-02	k: 3160	n:160000
Cons ci ratio: 8.582298e-03	ci left: 5.635171e-01	ci right 5.683805e-01	k: 90552	n:160000
KS ci ratio: 1.198882e-01	ci left: 6.239399e-03	ci right 7.041136e-03	k: 1061	n:160000
OR4D9   160000 perm   41 sec   (3921 perm/sec)   p_kst 6.631250e-03   p_cons 5.659500e-01   p_joint 1.975000e-02

Joint ci ratio: 6.374787e-02	ci left: 2.106473e-02	ci right 2.245753e-02	k: 3698	n:170000
Cons ci ratio: 8.325208e-03	ci left: 5.636399e-01	ci right 5.683578e-01	k: 96220	n:170000
KS ci ratio: 1.164321e-01	ci left: 6.237719e-03	ci right 7.014544e-03	k: 1125	n:170000
OR4D9   170000 perm   44 sec   (3861 perm/sec)   p_kst 6.617647e-03   p_cons 5.660000e-01   p_joint 2.175294e-02

Joint ci ratio: 6.214337e-02	ci left: 2.095524e-02	ci right 2.230467e-02	k: 3892	n:180000
Cons ci ratio: 8.094129e-03	ci left: 5.634953e-01	ci right 5.680803e-01	k: 101842	n:180000
KS ci ratio: 1.100020e-01	ci left: 6.620024e-03	ci right 7.395981e-03	k: 1260	n:180000
OR4D9   180000 perm   47 sec   (3801 perm/sec)   p_kst 7.000000e-03   p_cons 5.657889e-01   p_joint 2.162222e-02

Joint ci ratio: 5.779225e-02	ci left: 2.295841e-02	ci right 2.432987e-02	k: 4491	n:190000
Cons ci ratio: 7.880941e-03	ci left: 5.633886e-01	ci right 5.678515e-01	k: 107468	n:190000
KS ci ratio: 1.065077e-01	ci left: 6.701752e-03	ci right 7.460772e-03	k: 1344	n:190000
OR4D9   190000 perm   51 sec   (3742 perm/sec)   p_kst 7.073684e-03   p_cons 5.656211e-01   p_joint 2.363684e-02

Joint ci ratio: 5.793949e-02	ci left: 2.172631e-02	ci right 2.302758e-02	k: 4474	n:200000
Cons ci ratio: 7.681957e-03	ci left: 5.634092e-01	ci right 5.677589e-01	k: 113117	n:200000
KS ci ratio: 1.036191e-01	ci left: 6.736686e-03	ci right 7.477708e-03	k: 1420	n:200000
OR4D9   200000 perm   54 sec   (3686 perm/sec)   p_kst 7.100000e-03   p_cons 5.655850e-01   p_joint 2.237000e-02

Joint ci ratio: 5.846014e-02	ci left: 2.034874e-02	ci right 2.157882e-02	k: 4401	n:210000
Cons ci ratio: 7.503717e-03	ci left: 5.630098e-01	ci right 5.672551e-01	k: 118678	n:210000
KS ci ratio: 1.009533e-01	ci left: 6.768544e-03	ci right 7.492780e-03	k: 1496	n:210000
OR4D9   210000 perm   58 sec   (3635 perm/sec)   p_kst 7.123810e-03   p_cons 5.651333e-01   p_joint 2.095714e-02

Joint ci ratio: 5.536118e-02	ci left: 2.166460e-02	ci right 2.290258e-02	k: 4901	n:220000
Cons ci ratio: 7.331287e-03	ci left: 5.630526e-01	ci right 5.672002e-01	k: 124328	n:220000
KS ci ratio: 9.880010e-02	ci left: 6.753386e-03	ci right 7.459694e-03	k: 1562	n:220000
OR4D9   220000 perm   61 sec   (3583 perm/sec)   p_kst 7.100000e-03   p_cons 5.651273e-01   p_joint 2.227727e-02

Outputting figure to mutsig2_images.part000000000121/OR4D9.6_947_220000_0.0071_0.56513_0.022277.png
                gene_name: OR4D9
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0071 
        ci_ks_bounds_left: 0.0068 
       ci_ks_bounds_right: 0.0075 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 67 percent done.
OR4F6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
OR4F6   10000 perm   2 sec   (6404 perm/sec)   p_kst 4.239000e-01   p_cons 6.575000e-01   p_joint 6.082000e-01

Outputting figure to mutsig2_images.part000000000121/OR4F6.6_941_10000_0.4239_0.6575_0.6082.png
                gene_name: OR4F6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 68 percent done.
OR4K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
OR4K13   10000 perm   2 sec   (6151 perm/sec)   p_kst 3.570000e-01   p_cons 3.200000e-02   p_joint 7.210000e-02

Joint ci ratio: 1.200010e-01	ci left: 4.760289e-02	ci right 5.372858e-02	k: 1012	n:20000
Cons ci ratio: 1.506346e-01	ci left: 3.027829e-02	ci right 3.525876e-02	k: 654	n:20000
KS ci ratio: 3.636423e-02	ci left: 3.607631e-01	ci right 3.741755e-01	k: 7349	n:20000
OR4K13   20000 perm   4 sec   (5485 perm/sec)   p_kst 3.674500e-01   p_cons 3.270000e-02   p_joint 5.060000e-02

Joint ci ratio: 6.179561e-02	ci left: 1.146000e-01	ci right 1.219407e-01	k: 3547	n:30000
Cons ci ratio: 1.172823e-01	ci left: 3.379078e-02	ci right 3.803305e-02	k: 1076	n:30000
KS ci ratio: 2.976375e-02	ci left: 3.608778e-01	ci right 3.718147e-01	k: 10990	n:30000
OR4K13   30000 perm   6 sec   (5220 perm/sec)   p_kst 3.663333e-01   p_cons 3.586667e-02   p_joint 1.182333e-01

Joint ci ratio: 7.081688e-02	ci left: 6.862482e-02	ci right 7.368765e-02	k: 2845	n:40000
Cons ci ratio: 9.784887e-02	ci left: 3.668440e-02	ci right 4.048296e-02	k: 1542	n:40000
KS ci ratio: 2.578818e-02	ci left: 3.614014e-01	ci right 3.708681e-01	k: 14645	n:40000
OR4K13   40000 perm   8 sec   (5043 perm/sec)   p_kst 3.661250e-01   p_cons 3.855000e-02   p_joint 7.112500e-02

Outputting figure to mutsig2_images.part000000000121/OR4K13.6_917_40000_0.36612_0.03855_0.071125.png
                gene_name: OR4K13
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 70 percent done.
OR4K17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
Cons ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
KS ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
OR4K17   10000 perm   2 sec   (5645 perm/sec)   p_kst 2.040000e-02   p_cons 4.738000e-01   p_joint 7.390000e-02

Joint ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
Cons ci ratio: 2.916786e-02	ci left: 4.675586e-01	ci right 4.814488e-01	k: 9490	n:20000
KS ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
OR4K17   20000 perm   4 sec   (5091 perm/sec)   p_kst 2.130000e-02   p_cons 4.745000e-01   p_joint 5.860000e-02

Joint ci ratio: 8.539170e-02	ci left: 6.282390e-02	ci right 6.846057e-02	k: 1968	n:30000
Cons ci ratio: 2.460235e-02	ci left: 4.526827e-01	ci right 4.639921e-01	k: 13750	n:30000
KS ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
OR4K17   30000 perm   6 sec   (4858 perm/sec)   p_kst 2.240000e-02   p_cons 4.583333e-01   p_joint 6.560000e-02

Joint ci ratio: 8.185504e-02	ci left: 5.200113e-02	ci right 5.646386e-02	k: 2168	n:40000
Cons ci ratio: 2.129298e-02	ci left: 4.537575e-01	ci right 4.635485e-01	k: 18346	n:40000
KS ci ratio: 1.292602e-01	ci left: 2.102048e-02	ci right 2.394941e-02	k: 898	n:40000
OR4K17   40000 perm   8 sec   (4710 perm/sec)   p_kst 2.245000e-02   p_cons 4.586500e-01   p_joint 5.420000e-02

Joint ci ratio: 6.914333e-02	ci left: 5.830778e-02	ci right 6.250343e-02	k: 3019	n:50000
Cons ci ratio: 1.904556e-02	ci left: 4.542649e-01	ci right 4.630199e-01	k: 22932	n:50000
KS ci ratio: 1.163980e-01	ci left: 2.088752e-02	ci right 2.348836e-02	k: 1108	n:50000
OR4K17   50000 perm   11 sec   (4581 perm/sec)   p_kst 2.216000e-02   p_cons 4.586400e-01   p_joint 6.038000e-02

Joint ci ratio: 6.509171e-02	ci left: 5.514162e-02	ci right 5.886804e-02	k: 3419	n:60000
Cons ci ratio: 1.735674e-02	ci left: 4.554894e-01	ci right 4.634811e-01	k: 27569	n:60000
KS ci ratio: 1.061668e-01	ci left: 2.103593e-02	ci right 2.341060e-02	k: 1332	n:60000
OR4K17   60000 perm   13 sec   (4467 perm/sec)   p_kst 2.220000e-02   p_cons 4.594833e-01   p_joint 5.698333e-02

Joint ci ratio: 6.036763e-02	ci left: 5.509661e-02	ci right 5.854025e-02	k: 3976	n:70000
Cons ci ratio: 1.603366e-02	ci left: 4.568878e-01	ci right 4.642869e-01	k: 32241	n:70000
KS ci ratio: 9.787926e-02	ci left: 2.130251e-02	ci right 2.350876e-02	k: 1567	n:70000
OR4K17   70000 perm   16 sec   (4369 perm/sec)   p_kst 2.238571e-02   p_cons 4.605857e-01   p_joint 5.680000e-02

Outputting figure to mutsig2_images.part000000000121/OR4K17.6_1036_70000_0.022386_0.46059_0.0568.png
                gene_name: OR4K17
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 71 percent done.
OR2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
KS ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
OR2F1   10000 perm   2 sec   (6440 perm/sec)   p_kst 9.940000e-02   p_cons 3.325000e-01   p_joint 1.702000e-01

Joint ci ratio: 4.130535e-02	ci left: 3.040407e-01	ci right 3.169145e-01	k: 6209	n:20000
Cons ci ratio: 4.016163e-02	ci left: 3.161225e-01	ci right 3.291291e-01	k: 6452	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
OR2F1   20000 perm   4 sec   (5685 perm/sec)   p_kst 9.830000e-02   p_cons 3.226000e-01   p_joint 3.104500e-01

Outputting figure to mutsig2_images.part000000000121/OR2F1.5_958_20000_0.0983_0.3226_0.31045.png
                gene_name: OR2F1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 72 percent done.
OR2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
Cons ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
KS ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
OR2H1   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.574000e-01   p_cons 4.447000e-01   p_joint 7.278000e-01

Outputting figure to mutsig2_images.part000000000121/OR2H1.5_955_10000_0.5574_0.4447_0.7278.png
                gene_name: OR2H1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 73 percent done.
OR4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
OR4B1   10000 perm   2 sec   (6126 perm/sec)   p_kst 3.963000e-01   p_cons 9.006000e-01   p_joint 8.459000e-01

Outputting figure to mutsig2_images.part000000000121/OR4B1.5_933_10000_0.3963_0.9006_0.8459.png
                gene_name: OR4B1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 74 percent done.
OR4E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
OR4E2   10000 perm   2 sec   (6155 perm/sec)   p_kst 4.735000e-01   p_cons 3.184000e-01   p_joint 4.495000e-01

Outputting figure to mutsig2_images.part000000000121/OR4E2.5_944_10000_0.4735_0.3184_0.4495.png
                gene_name: OR4E2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 76 percent done.
OR2J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
OR2J3   10000 perm   2 sec   (5961 perm/sec)   p_kst 1.953000e-01   p_cons 6.169000e-01   p_joint 5.412000e-01

Outputting figure to mutsig2_images.part000000000121/OR2J3.4_939_10000_0.1953_0.6169_0.5412.png
                gene_name: OR2J3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 77 percent done.
OR2W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
Cons ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
KS ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
OR2W1   10000 perm   2 sec   (6469 perm/sec)   p_kst 3.755000e-01   p_cons 3.257000e-01   p_joint 4.448000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W1.4_967_10000_0.3755_0.3257_0.4448.png
                gene_name: OR2W1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 78 percent done.
OR2Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
Cons ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
KS ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
OR2Y1   10000 perm   2 sec   (6565 perm/sec)   p_kst 7.236000e-01   p_cons 1.082000e-01   p_joint 2.902000e-01

Joint ci ratio: 5.807201e-02	ci left: 1.801340e-01	ci right 1.909576e-01	k: 3710	n:20000
Cons ci ratio: 8.681902e-02	ci left: 8.847004e-02	ci right 9.654888e-02	k: 1849	n:20000
KS ci ratio: 1.720595e-02	ci left: 7.155830e-01	ci right 7.280525e-01	k: 14437	n:20000
OR2Y1   20000 perm   3 sec   (5779 perm/sec)   p_kst 7.218500e-01   p_cons 9.245000e-02   p_joint 1.855000e-01

Outputting figure to mutsig2_images.part000000000121/OR2Y1.4_940_20000_0.72185_0.09245_0.1855.png
                gene_name: OR2Y1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 79 percent done.
OR4D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
Cons ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
OR4D5   10000 perm   2 sec   (6101 perm/sec)   p_kst 3.360000e-01   p_cons 4.255000e-01   p_joint 4.283000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D5.4_961_10000_0.336_0.4255_0.4283.png
                gene_name: OR4D5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 80 percent done.
OR4F15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
Cons ci ratio: 1.443060e-02	ci left: 8.741858e-01	ci right 8.869915e-01	k: 8807	n:10000
KS ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
OR4F15   10000 perm   2 sec   (5991 perm/sec)   p_kst 3.290000e-02   p_cons 8.807000e-01   p_joint 1.429000e-01

Joint ci ratio: 7.104720e-02	ci left: 1.273868e-01	ci right 1.368204e-01	k: 2641	n:20000
Cons ci ratio: 1.009582e-02	ci left: 8.783630e-01	ci right 8.873253e-01	k: 17658	n:20000
KS ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
OR4F15   20000 perm   4 sec   (5385 perm/sec)   p_kst 3.470000e-02   p_cons 8.829000e-01   p_joint 1.320500e-01

Joint ci ratio: 5.992394e-02	ci left: 1.210800e-01	ci right 1.285928e-01	k: 3744	n:30000
Cons ci ratio: 8.244228e-03	ci left: 8.791739e-01	ci right 8.864851e-01	k: 26486	n:30000
KS ci ratio: 1.208790e-01	ci left: 3.181601e-02	ci right 3.594157e-02	k: 1015	n:30000
OR4F15   30000 perm   6 sec   (5059 perm/sec)   p_kst 3.383333e-02   p_cons 8.828667e-01   p_joint 1.248000e-01

Joint ci ratio: 5.357883e-02	ci left: 1.148538e-01	ci right 1.212018e-01	k: 4720	n:40000
Cons ci ratio: 7.077022e-03	ci left: 8.815043e-01	ci right 8.877897e-01	k: 35387	n:40000
KS ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
OR4F15   40000 perm   8 sec   (4919 perm/sec)   p_kst 3.425000e-02   p_cons 8.846750e-01   p_joint 1.180000e-01

Joint ci ratio: 4.500141e-02	ci left: 1.287870e-01	ci right 1.347359e-01	k: 6587	n:50000
Cons ci ratio: 6.312272e-03	ci left: 8.824139e-01	ci right 8.880213e-01	k: 44262	n:50000
KS ci ratio: 9.422019e-02	ci left: 3.188130e-02	ci right 3.505317e-02	k: 1672	n:50000
OR4F15   50000 perm   10 sec   (4803 perm/sec)   p_kst 3.344000e-02   p_cons 8.852400e-01   p_joint 1.317400e-01

Outputting figure to mutsig2_images.part000000000121/OR4F15.4_941_50000_0.03344_0.88524_0.13174.png
                gene_name: OR4F15
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 82 percent done.
OR2AE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
Cons ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
KS ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
OR2AE1   10000 perm   2 sec   (6532 perm/sec)   p_kst 1.285000e-01   p_cons 2.493000e-01   p_joint 2.007000e-01

Joint ci ratio: 5.285453e-02	ci left: 2.099668e-01	ci right 2.214160e-01	k: 4313	n:20000
Cons ci ratio: 4.785010e-02	ci left: 2.452008e-01	ci right 2.572716e-01	k: 5024	n:20000
KS ci ratio: 7.277074e-02	ci left: 1.220703e-01	ci right 1.313386e-01	k: 2533	n:20000
OR2AE1   20000 perm   3 sec   (5817 perm/sec)   p_kst 1.266500e-01   p_cons 2.512000e-01   p_joint 2.156500e-01

Outputting figure to mutsig2_images.part000000000121/OR2AE1.3_976_20000_0.12665_0.2512_0.21565.png
                gene_name: OR2AE1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 83 percent done.
OR2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
Cons ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
KS ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
OR2B3   10000 perm   2 sec   (6584 perm/sec)   p_kst 6.781000e-01   p_cons 1.722000e-01   p_joint 5.139000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B3.3_946_10000_0.6781_0.1722_0.5139.png
                gene_name: OR2B3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 84 percent done.
OR2H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
Cons ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
KS ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
OR2H2   10000 perm   2 sec   (6340 perm/sec)   p_kst 7.565000e-01   p_cons 3.251000e-01   p_joint 6.899000e-01

Outputting figure to mutsig2_images.part000000000121/OR2H2.3_943_10000_0.7565_0.3251_0.6899.png
                gene_name: OR2H2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 85 percent done.
OR2Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
KS ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
OR2Z1   10000 perm   2 sec   (6530 perm/sec)   p_kst 9.038000e-01   p_cons 6.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2Z1.3_948_10000_0.9038_0.682_1.png
                gene_name: OR2Z1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
OR3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
Cons ci ratio: 2.442631e-02	ci left: 7.113894e-01	ci right 7.290822e-01	k: 7203	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
OR3A1   10000 perm   2 sec   (6344 perm/sec)   p_kst 3.507000e-01   p_cons 7.203000e-01   p_joint 6.441000e-01

Outputting figure to mutsig2_images.part000000000121/OR3A1.3_952_10000_0.3507_0.7203_0.6441.png
                gene_name: OR3A1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 88 percent done.
OR3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
Cons ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KS ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
OR3A3   10000 perm   1 sec   (7037 perm/sec)   p_kst 1.782000e-01   p_cons 1.315000e-01   p_joint 1.496000e-01

Joint ci ratio: 7.599955e-02	ci left: 1.129205e-01	ci right 1.218911e-01	k: 2347	n:20000
Cons ci ratio: 7.345275e-02	ci left: 1.200527e-01	ci right 1.292568e-01	k: 2492	n:20000
KS ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
OR3A3   20000 perm   3 sec   (6150 perm/sec)   p_kst 1.831500e-01   p_cons 1.246000e-01   p_joint 1.173500e-01

Outputting figure to mutsig2_images.part000000000121/OR3A3.3_969_20000_0.18315_0.1246_0.11735.png
                gene_name: OR3A3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 89 percent done.
OR4K14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
KS ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
OR4K14   10000 perm   1 sec   (6711 perm/sec)   p_kst 7.886000e-01   p_cons 8.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4K14.3_936_10000_0.7886_0.8791_1.png
                gene_name: OR4K14
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
OR2A7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 91 percent done.
OR2AG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
Cons ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
KS ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
OR2AG1   10000 perm   1 sec   (6915 perm/sec)   p_kst 1.978000e-01   p_cons 5.040000e-02   p_joint 3.120000e-02

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
KS ci ratio: 5.574148e-02	ci left: 1.926944e-01	ci right 2.037935e-01	k: 3964	n:20000
OR2AG1   20000 perm   3 sec   (6131 perm/sec)   p_kst 1.982000e-01   p_cons 4.435000e-02   p_joint 8.780000e-02

Joint ci ratio: 7.339245e-02	ci left: 8.363757e-02	ci right 9.004271e-02	k: 2604	n:30000
Cons ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
KS ci ratio: 4.577466e-02	ci left: 1.919174e-01	ci right 2.009415e-01	k: 5892	n:30000
OR2AG1   30000 perm   5 sec   (5818 perm/sec)   p_kst 1.964000e-01   p_cons 4.470000e-02   p_joint 8.680000e-02

Joint ci ratio: 8.415669e-02	ci left: 4.928071e-02	ci right 5.363470e-02	k: 2057	n:40000
Cons ci ratio: 9.005595e-02	ci left: 4.318474e-02	ci right 4.728161e-02	k: 1808	n:40000
KS ci ratio: 3.954297e-02	ci left: 1.933104e-01	ci right 2.011336e-01	k: 7888	n:40000
OR2AG1   40000 perm   7 sec   (5614 perm/sec)   p_kst 1.972000e-01   p_cons 4.520000e-02   p_joint 5.142500e-02

Outputting figure to mutsig2_images.part000000000121/OR2AG1.2_955_40000_0.1972_0.0452_0.051425.png
                gene_name: OR2AG1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 93 percent done.
OR2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
Cons ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
KS ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
OR2C1   10000 perm   1 sec   (6982 perm/sec)   p_kst 4.346000e-01   p_cons 6.968000e-01   p_joint 7.575000e-01

Outputting figure to mutsig2_images.part000000000121/OR2C1.2_943_10000_0.4346_0.6968_0.7575.png
                gene_name: OR2C1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 94 percent done.
OR2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
OR2D2   10000 perm   1 sec   (7263 perm/sec)   p_kst 6.410000e-01   p_cons 4.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2D2.2_930_10000_0.641_0.475_1.png
                gene_name: OR2D2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
OR2K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.946732e-02	ci left: 1.878651e-01	ci right 2.035126e-01	k: 1956	n:10000
Cons ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
KS ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
OR2K2   10000 perm   1 sec   (7267 perm/sec)   p_kst 8.495000e-01   p_cons 1.359000e-01   p_joint 1.956000e-01

Outputting figure to mutsig2_images.part000000000121/OR2K2.2_954_10000_0.8495_0.1359_0.1956.png
                gene_name: OR2K2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 96 percent done.
OR2S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
Cons ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
OR2S2   10000 perm   1 sec   (6851 perm/sec)   p_kst 9.800000e-03   p_cons 1.340000e-02   p_joint 2.000000e-04

Joint ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
Cons ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
KS ci ratio: 2.822767e-01	ci left: 8.202300e-03	ci right 1.094312e-02	k: 190	n:20000
OR2S2   20000 perm   3 sec   (6055 perm/sec)   p_kst 9.500000e-03   p_cons 1.355000e-02   p_joint 5.000000e-05

Joint ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
Cons ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
KS ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
OR2S2   30000 perm   5 sec   (5746 perm/sec)   p_kst 9.400000e-03   p_cons 1.283333e-02   p_joint 6.666667e-04

Joint ci ratio: 6.355979e-01	ci left: 6.513664e-04	ci right 1.274768e-03	k: 37	n:40000
Cons ci ratio: 1.686570e-01	ci left: 1.220031e-02	ci right 1.447116e-02	k: 532	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
OR2S2   40000 perm   7 sec   (5515 perm/sec)   p_kst 9.625000e-03   p_cons 1.330000e-02   p_joint 9.250000e-04

Joint ci ratio: 5.433180e-01	ci left: 7.595484e-04	ci right 1.340896e-03	k: 51	n:50000
Cons ci ratio: 1.504233e-01	ci left: 1.239124e-02	ci right 1.442583e-02	k: 669	n:50000
KS ci ratio: 1.782476e-01	ci left: 8.725652e-03	ci right 1.045200e-02	k: 478	n:50000
OR2S2   50000 perm   9 sec   (5312 perm/sec)   p_kst 9.560000e-03   p_cons 1.338000e-02   p_joint 1.020000e-03

Joint ci ratio: 4.822492e-01	ci left: 8.361902e-04	ci right 1.380592e-03	k: 65	n:60000
Cons ci ratio: 1.376648e-01	ci left: 1.241474e-02	ci right 1.426611e-02	k: 799	n:60000
KS ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
OR2S2   60000 perm   12 sec   (5167 perm/sec)   p_kst 9.583333e-03   p_cons 1.331667e-02   p_joint 1.083333e-03

Joint ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
Cons ci ratio: 1.270626e-01	ci left: 1.256130e-02	ci right 1.427938e-02	k: 938	n:70000
KS ci ratio: 1.508289e-01	ci left: 8.835896e-03	ci right 1.029091e-02	k: 668	n:70000
OR2S2   70000 perm   14 sec   (5029 perm/sec)   p_kst 9.542857e-03   p_cons 1.340000e-02   p_joint 1.714286e-04

Joint ci ratio: 1.087117e+00	ci left: 7.750951e-05	ci right 2.620051e-04	k: 12	n:80000
Cons ci ratio: 1.186403e-01	ci left: 1.266321e-02	ci right 1.427236e-02	k: 1076	n:80000
KS ci ratio: 1.399438e-01	ci left: 9.032416e-03	ci right 1.040349e-02	k: 776	n:80000
OR2S2   80000 perm   16 sec   (4863 perm/sec)   p_kst 9.700000e-03   p_cons 1.345000e-02   p_joint 1.500000e-04

Joint ci ratio: 1.012050e+00	ci left: 8.504620e-05	ci right 2.609820e-04	k: 14	n:90000
Cons ci ratio: 1.114654e-01	ci left: 1.279943e-02	ci right 1.432105e-02	k: 1219	n:90000
KS ci ratio: 1.311941e-01	ci left: 9.177454e-03	ci right 1.047666e-02	k: 883	n:90000
OR2S2   90000 perm   19 sec   (4781 perm/sec)   p_kst 9.811111e-03   p_cons 1.354444e-02   p_joint 1.555556e-04

Joint ci ratio: 9.799167e-01	ci left: 8.395621e-05	ci right 2.473901e-04	k: 15	n:100000
Cons ci ratio: 1.060056e-01	ci left: 1.277440e-02	ci right 1.421402e-02	k: 1348	n:100000
KS ci ratio: 1.241571e-01	ci left: 9.256849e-03	ci right 1.049183e-02	k: 986	n:100000
OR2S2   100000 perm   21 sec   (4704 perm/sec)   p_kst 9.860000e-03   p_cons 1.348000e-02   p_joint 1.500000e-04

Joint ci ratio: 9.799243e-01	ci left: 7.632364e-05	ci right 2.249011e-04	k: 15	n:110000
Cons ci ratio: 1.010000e-01	ci left: 1.282633e-02	ci right 1.419950e-02	k: 1485	n:110000
KS ci ratio: 1.167448e-01	ci left: 9.552817e-03	ci right 1.074595e-02	k: 1115	n:110000
OR2S2   110000 perm   24 sec   (4633 perm/sec)   p_kst 1.013636e-02   p_cons 1.350000e-02   p_joint 1.363636e-04

Joint ci ratio: 8.992347e-01	ci left: 8.890185e-05	ci right 2.370543e-04	k: 18	n:120000
Cons ci ratio: 9.679374e-02	ci left: 1.283027e-02	ci right 1.414340e-02	k: 1617	n:120000
KS ci ratio: 1.122157e-01	ci left: 9.501451e-03	ci right 1.063908e-02	k: 1207	n:120000
OR2S2   120000 perm   26 sec   (4565 perm/sec)   p_kst 1.005833e-02   p_cons 1.347500e-02   p_joint 1.500000e-04

Joint ci ratio: 8.356729e-01	ci left: 9.999755e-05	ci right 2.469182e-04	k: 21	n:130000
Cons ci ratio: 9.264437e-02	ci left: 1.295486e-02	ci right 1.422082e-02	k: 1765	n:130000
KS ci ratio: 1.088974e-01	ci left: 9.331496e-03	ci right 1.041361e-02	k: 1282	n:130000
OR2S2   130000 perm   29 sec   (4496 perm/sec)   p_kst 9.861538e-03   p_cons 1.357692e-02   p_joint 1.615385e-04

Joint ci ratio: 8.173064e-01	ci left: 9.848313e-05	ci right 2.379066e-04	k: 22	n:140000
Cons ci ratio: 8.884548e-02	ci left: 1.310460e-02	ci right 1.432995e-02	k: 1919	n:140000
KS ci ratio: 1.054652e-01	ci left: 9.255808e-03	ci right 1.029322e-02	k: 1367	n:140000
OR2S2   140000 perm   32 sec   (4431 perm/sec)   p_kst 9.764286e-03   p_cons 1.370714e-02   p_joint 1.571429e-04

Joint ci ratio: 8.173111e-01	ci left: 9.191743e-05	ci right 2.220467e-04	k: 22	n:150000
Cons ci ratio: 8.589946e-02	ci left: 1.310477e-02	ci right 1.428747e-02	k: 2053	n:150000
KS ci ratio: 1.024808e-01	ci left: 9.164690e-03	ci right 1.016107e-02	k: 1448	n:150000
OR2S2   150000 perm   34 sec   (4365 perm/sec)   p_kst 9.653333e-03   p_cons 1.368667e-02   p_joint 1.466667e-04

Joint ci ratio: 5.284802e-01	ci left: 2.535502e-04	ci right 4.403416e-04	k: 54	n:160000
Cons ci ratio: 8.307447e-02	ci left: 1.315449e-02	ci right 1.430073e-02	k: 2195	n:160000
KS ci ratio: 9.905208e-02	ci left: 9.213343e-03	ci right 1.017955e-02	k: 1550	n:160000
OR2S2   160000 perm   38 sec   (4264 perm/sec)   p_kst 9.687500e-03   p_cons 1.371875e-02   p_joint 3.375000e-04

Joint ci ratio: 3.347722e-01	ci left: 6.712440e-04	ci right 9.462412e-04	k: 136	n:170000
Cons ci ratio: 8.065106e-02	ci left: 1.315279e-02	ci right 1.426388e-02	k: 2329	n:170000
KS ci ratio: 9.579974e-02	ci left: 9.285475e-03	ci right 1.022548e-02	k: 1657	n:170000
OR2S2   170000 perm   40 sec   (4204 perm/sec)   p_kst 9.747059e-03   p_cons 1.370000e-02   p_joint 8.000000e-04

Joint ci ratio: 3.242890e-01	ci left: 6.798178e-04	ci right 9.477926e-04	k: 145	n:180000
Cons ci ratio: 7.834751e-02	ci left: 1.317896e-02	ci right 1.425901e-02	k: 2468	n:180000
KS ci ratio: 9.295448e-02	ci left: 9.328341e-03	ci right 1.024311e-02	k: 1760	n:180000
OR2S2   180000 perm   44 sec   (4136 perm/sec)   p_kst 9.777778e-03   p_cons 1.371111e-02   p_joint 8.055556e-04

Joint ci ratio: 3.127200e-01	ci left: 6.973072e-04	ci right 9.604135e-04	k: 156	n:190000
Cons ci ratio: 7.611242e-02	ci left: 1.324409e-02	ci right 1.429714e-02	k: 2615	n:190000
KS ci ratio: 9.074268e-02	ci left: 9.284743e-03	ci right 1.017242e-02	k: 1847	n:190000
OR2S2   190000 perm   47 sec   (4071 perm/sec)   p_kst 9.721053e-03   p_cons 1.376316e-02   p_joint 8.210526e-04

Joint ci ratio: 3.842867e-01	ci left: 4.203785e-04	ci right 6.245531e-04	k: 103	n:200000
Cons ci ratio: 7.442792e-02	ci left: 1.317057e-02	ci right 1.419360e-02	k: 2735	n:200000
KS ci ratio: 8.835937e-02	ci left: 9.314202e-03	ci right 1.018010e-02	k: 1948	n:200000
OR2S2   200000 perm   50 sec   (4005 perm/sec)   p_kst 9.740000e-03   p_cons 1.367500e-02   p_joint 5.150000e-04

Joint ci ratio: 2.518413e-01	ci left: 1.007359e-03	ci right 1.301927e-03	k: 241	n:210000
Cons ci ratio: 7.278593e-02	ci left: 1.312767e-02	ci right 1.412392e-02	k: 2860	n:210000
KS ci ratio: 8.656050e-02	ci left: 9.252591e-03	ci right 1.009436e-02	k: 2030	n:210000
OR2S2   210000 perm   53 sec   (3941 perm/sec)   p_kst 9.666667e-03   p_cons 1.361905e-02   p_joint 1.147619e-03

Joint ci ratio: 2.453371e-01	ci left: 1.016981e-03	ci right 1.305512e-03	k: 254	n:220000
Cons ci ratio: 7.110331e-02	ci left: 1.314249e-02	ci right 1.411585e-02	k: 2997	n:220000
KS ci ratio: 8.490774e-02	ci left: 9.187846e-03	ci right 1.000697e-02	k: 2110	n:220000
OR2S2   220000 perm   57 sec   (3883 perm/sec)   p_kst 9.590909e-03   p_cons 1.362273e-02   p_joint 1.154545e-03

Joint ci ratio: 2.406644e-01	ci left: 1.013596e-03	ci right 1.294871e-03	k: 264	n:230000
Cons ci ratio: 6.952100e-02	ci left: 1.316053e-02	ci right 1.411266e-02	k: 3135	n:230000
KS ci ratio: 8.315476e-02	ci left: 9.171452e-03	ci right 9.971415e-03	k: 2200	n:230000
OR2S2   230000 perm   60 sec   (3825 perm/sec)   p_kst 9.565217e-03   p_cons 1.363043e-02   p_joint 1.147826e-03

Joint ci ratio: 2.375497e-01	ci left: 9.987808e-04	ci right 1.271830e-03	k: 271	n:240000
Cons ci ratio: 6.792424e-02	ci left: 1.322235e-02	ci right 1.415612e-02	k: 3284	n:240000
KS ci ratio: 8.163205e-02	ci left: 9.128007e-03	ci right 9.908907e-03	k: 2283	n:240000
OR2S2   240000 perm   64 sec   (3771 perm/sec)   p_kst 9.512500e-03   p_cons 1.368333e-02   p_joint 1.129167e-03

Joint ci ratio: 2.333004e-01	ci left: 9.964703e-04	ci right 1.263312e-03	k: 281	n:250000
Cons ci ratio: 6.648175e-02	ci left: 1.325979e-02	ci right 1.417554e-02	k: 3428	n:250000
KS ci ratio: 7.993472e-02	ci left: 9.146971e-03	ci right 9.912465e-03	k: 2381	n:250000
OR2S2   250000 perm   67 sec   (3715 perm/sec)   p_kst 9.524000e-03   p_cons 1.371200e-02   p_joint 1.124000e-03

Joint ci ratio: 2.684834e-01	ci left: 7.093483e-04	ci right 9.327906e-04	k: 212	n:260000
Cons ci ratio: 6.529439e-02	ci left: 1.322642e-02	ci right 1.412293e-02	k: 3554	n:260000
KS ci ratio: 7.841889e-02	ci left: 9.145774e-03	ci right 9.895990e-03	k: 2474	n:260000
OR2S2   260000 perm   71 sec   (3660 perm/sec)   p_kst 9.515385e-03   p_cons 1.366923e-02   p_joint 8.153846e-04

Joint ci ratio: 2.629845e-01	ci left: 7.141894e-04	ci right 9.337910e-04	k: 221	n:270000
Cons ci ratio: 6.412431e-02	ci left: 1.321388e-02	ci right 1.409290e-02	k: 3685	n:270000
KS ci ratio: 7.685030e-02	ci left: 9.177491e-03	ci right 9.914576e-03	k: 2576	n:270000
OR2S2   270000 perm   75 sec   (3608 perm/sec)   p_kst 9.540741e-03   p_cons 1.364815e-02   p_joint 8.185185e-04

Joint ci ratio: 2.186672e-01	ci left: 1.021116e-03	ci right 1.275105e-03	k: 320	n:280000
Cons ci ratio: 6.299823e-02	ci left: 1.320941e-02	ci right 1.407213e-02	k: 3818	n:280000
KS ci ratio: 7.557184e-02	ci left: 9.158015e-03	ci right 9.880763e-03	k: 2664	n:280000
OR2S2   280000 perm   79 sec   (3562 perm/sec)   p_kst 9.514286e-03   p_cons 1.363571e-02   p_joint 1.142857e-03

Joint ci ratio: 2.140484e-01	ci left: 1.031566e-03	ci right 1.282023e-03	k: 334	n:290000
Cons ci ratio: 6.176331e-02	ci left: 1.327667e-02	ci right 1.412619e-02	k: 3972	n:290000
KS ci ratio: 7.417852e-02	ci left: 9.183981e-03	ci right 9.894838e-03	k: 2765	n:290000
OR2S2   290000 perm   82 sec   (3517 perm/sec)   p_kst 9.534483e-03   p_cons 1.369655e-02   p_joint 1.151724e-03

Joint ci ratio: 2.513658e-01	ci left: 7.082605e-04	ci right 9.149127e-04	k: 242	n:300000
Cons ci ratio: 6.078521e-02	ci left: 1.325752e-02	ci right 1.409191e-02	k: 4101	n:300000
KS ci ratio: 7.289804e-02	ci left: 9.198510e-03	ci right 9.897680e-03	k: 2863	n:300000
OR2S2   300000 perm   86 sec   (3474 perm/sec)   p_kst 9.543333e-03   p_cons 1.367000e-02   p_joint 8.066667e-04

Joint ci ratio: 2.079325e-01	ci left: 1.026121e-03	ci right 1.267231e-03	k: 354	n:310000
Cons ci ratio: 5.967366e-02	ci left: 1.331917e-02	ci right 1.414157e-02	k: 4255	n:310000
KS ci ratio: 7.176733e-02	ci left: 9.190021e-03	ci right 9.877259e-03	k: 2954	n:310000
OR2S2   310000 perm   90 sec   (3433 perm/sec)   p_kst 9.529032e-03   p_cons 1.372581e-02   p_joint 1.141935e-03

Joint ci ratio: 2.053466e-01	ci left: 1.020724e-03	ci right 1.257209e-03	k: 363	n:320000
Cons ci ratio: 5.869520e-02	ci left: 1.334321e-02	ci right 1.415313e-02	k: 4398	n:320000
KS ci ratio: 7.084044e-02	ci left: 9.142229e-03	ci right 9.816699e-03	k: 3032	n:320000
OR2S2   320000 perm   94 sec   (3390 perm/sec)   p_kst 9.475000e-03   p_cons 1.374375e-02   p_joint 1.134375e-03

Joint ci ratio: 2.004482e-01	ci left: 1.041569e-03	ci right 1.276423e-03	k: 381	n:330000
Cons ci ratio: 5.776335e-02	ci left: 1.336590e-02	ci right 1.416389e-02	k: 4541	n:330000
KS ci ratio: 6.967771e-02	ci left: 9.168856e-03	ci right 9.833740e-03	k: 3134	n:330000
OR2S2   330000 perm   99 sec   (3342 perm/sec)   p_kst 9.496970e-03   p_cons 1.376061e-02   p_joint 1.154545e-03

Joint ci ratio: 1.973720e-01	ci left: 1.044471e-03	ci right 1.275931e-03	k: 393	n:340000
Cons ci ratio: 5.681306e-02	ci left: 1.341635e-02	ci right 1.420374e-02	k: 4694	n:340000
KS ci ratio: 6.870986e-02	ci left: 9.156417e-03	ci right 9.810808e-03	k: 3223	n:340000
OR2S2   340000 perm   103 sec   (3297 perm/sec)   p_kst 9.479412e-03   p_cons 1.380588e-02   p_joint 1.155882e-03

Joint ci ratio: 1.961333e-01	ci left: 1.028210e-03	ci right 1.254465e-03	k: 398	n:350000
Cons ci ratio: 5.611394e-02	ci left: 1.336540e-02	ci right 1.413983e-02	k: 4812	n:350000
KS ci ratio: 6.782258e-02	ci left: 9.133513e-03	ci right 9.777505e-03	k: 3308	n:350000
OR2S2   350000 perm   107 sec   (3256 perm/sec)   p_kst 9.451429e-03   p_cons 1.374857e-02   p_joint 1.137143e-03

Joint ci ratio: 1.918517e-01	ci left: 1.047222e-03	ci right 1.272043e-03	k: 416	n:360000
Cons ci ratio: 5.527542e-02	ci left: 1.339679e-02	ci right 1.416107e-02	k: 4959	n:360000
KS ci ratio: 6.666216e-02	ci left: 9.196618e-03	ci right 9.833537e-03	k: 3424	n:360000
OR2S2   360000 perm   112 sec   (3217 perm/sec)   p_kst 9.511111e-03   p_cons 1.377500e-02   p_joint 1.155556e-03

Joint ci ratio: 1.904877e-01	ci left: 1.034358e-03	ci right 1.254656e-03	k: 422	n:370000
Cons ci ratio: 5.454383e-02	ci left: 1.339190e-02	ci right 1.414547e-02	k: 5093	n:370000
KS ci ratio: 6.582257e-02	ci left: 9.181957e-03	ci right 9.809545e-03	k: 3512	n:370000
OR2S2   370000 perm   116 sec   (3179 perm/sec)   p_kst 9.491892e-03   p_cons 1.376486e-02   p_joint 1.140541e-03

Joint ci ratio: 1.878418e-01	ci left: 1.037221e-03	ci right 1.254711e-03	k: 434	n:380000
Cons ci ratio: 5.370530e-02	ci left: 1.345485e-02	ci right 1.419996e-02	k: 5253	n:380000
KS ci ratio: 6.506867e-02	ci left: 9.152580e-03	ci right 9.770725e-03	k: 3594	n:380000
OR2S2   380000 perm   121 sec   (3141 perm/sec)   p_kst 9.457895e-03   p_cons 1.382368e-02   p_joint 1.142105e-03

Joint ci ratio: 1.848895e-01	ci left: 1.044849e-03	ci right 1.260109e-03	k: 448	n:390000
Cons ci ratio: 5.297876e-02	ci left: 1.347669e-02	ci right 1.421261e-02	k: 5398	n:390000
KS ci ratio: 6.427836e-02	ci left: 9.142411e-03	ci right 9.752090e-03	k: 3683	n:390000
OR2S2   390000 perm   126 sec   (3101 perm/sec)   p_kst 9.443590e-03   p_cons 1.384103e-02   p_joint 1.148718e-03

Joint ci ratio: 1.701609e-01	ci left: 1.212254e-03	ci right 1.440069e-03	k: 529	n:400000
Cons ci ratio: 5.229048e-02	ci left: 1.349257e-02	ci right 1.421950e-02	k: 5541	n:400000
KS ci ratio: 6.355017e-02	ci left: 9.122951e-03	ci right 9.724187e-03	k: 3768	n:400000
OR2S2   400000 perm   131 sec   (3063 perm/sec)   p_kst 9.420000e-03   p_cons 1.385250e-02   p_joint 1.322500e-03

Joint ci ratio: 1.681117e-01	ci left: 1.213052e-03	ci right 1.437993e-03	k: 542	n:410000
Cons ci ratio: 5.166062e-02	ci left: 1.349088e-02	ci right 1.420870e-02	k: 5677	n:410000
KS ci ratio: 6.270671e-02	ci left: 9.145297e-03	ci right 9.739716e-03	k: 3870	n:410000
OR2S2   410000 perm   135 sec   (3026 perm/sec)   p_kst 9.439024e-03   p_cons 1.384634e-02   p_joint 1.321951e-03

Joint ci ratio: 1.667364e-01	ci left: 1.204700e-03	ci right 1.426081e-03	k: 551	n:420000
Cons ci ratio: 5.103518e-02	ci left: 1.349872e-02	ci right 1.420801e-02	k: 5817	n:420000
KS ci ratio: 6.199055e-02	ci left: 9.138496e-03	ci right 9.725445e-03	k: 3960	n:420000
OR2S2   420000 perm   140 sec   (2990 perm/sec)   p_kst 9.428571e-03   p_cons 1.385000e-02   p_joint 1.311905e-03

Joint ci ratio: 1.642260e-01	ci left: 1.214582e-03	ci right 1.434087e-03	k: 568	n:430000
Cons ci ratio: 5.044910e-02	ci left: 1.349706e-02	ci right 1.419788e-02	k: 5953	n:430000
KS ci ratio: 6.121454e-02	ci left: 9.157241e-03	ci right 9.737770e-03	k: 4061	n:430000
OR2S2   430000 perm   146 sec   (2955 perm/sec)   p_kst 9.444186e-03   p_cons 1.384419e-02   p_joint 1.320930e-03

Joint ci ratio: 1.626616e-01	ci left: 1.210955e-03	ci right 1.427516e-03	k: 579	n:440000
Cons ci ratio: 4.988691e-02	ci left: 1.349328e-02	ci right 1.418587e-02	k: 6088	n:440000
KS ci ratio: 6.053305e-02	ci left: 9.155029e-03	ci right 9.728731e-03	k: 4153	n:440000
OR2S2   440000 perm   151 sec   (2920 perm/sec)   p_kst 9.438636e-03   p_cons 1.383636e-02   p_joint 1.315909e-03

Joint ci ratio: 1.616900e-01	ci left: 1.198968e-03	ci right 1.411980e-03	k: 586	n:450000
Cons ci ratio: 4.941157e-02	ci left: 1.345239e-02	ci right 1.413611e-02	k: 6206	n:450000
KS ci ratio: 5.992371e-02	ci left: 9.137626e-03	ci right 9.704273e-03	k: 4238	n:450000
OR2S2   450000 perm   156 sec   (2886 perm/sec)   p_kst 9.417778e-03   p_cons 1.379111e-02   p_joint 1.302222e-03

Joint ci ratio: 1.604652e-01	ci left: 1.191680e-03	ci right 1.401639e-03	k: 595	n:460000
Cons ci ratio: 4.887909e-02	ci left: 1.345197e-02	ci right 1.412809e-02	k: 6342	n:460000
KS ci ratio: 5.913255e-02	ci left: 9.183125e-03	ci right 9.744819e-03	k: 4352	n:460000
OR2S2   460000 perm   161 sec   (2853 perm/sec)   p_kst 9.460870e-03   p_cons 1.378696e-02   p_joint 1.293478e-03

Joint ci ratio: 1.579660e-01	ci left: 1.205141e-03	ci right 1.413851e-03	k: 614	n:470000
Cons ci ratio: 4.831434e-02	ci left: 1.347893e-02	ci right 1.414836e-02	k: 6491	n:470000
KS ci ratio: 5.850429e-02	ci left: 9.184798e-03	ci right 9.740423e-03	k: 4446	n:470000
OR2S2   470000 perm   167 sec   (2821 perm/sec)   p_kst 9.459574e-03   p_cons 1.381064e-02   p_joint 1.306383e-03

Joint ci ratio: 1.681279e-01	ci left: 1.036140e-03	ci right 1.228296e-03	k: 542	n:480000
Cons ci ratio: 4.774321e-02	ci left: 1.351922e-02	ci right 1.418250e-02	k: 6647	n:480000
KS ci ratio: 5.791495e-02	ci left: 9.180272e-03	ci right 9.729841e-03	k: 4537	n:480000
OR2S2   480000 perm   172 sec   (2790 perm/sec)   p_kst 9.452083e-03   p_cons 1.384792e-02   p_joint 1.129167e-03

Joint ci ratio: 1.969076e-01	ci left: 7.286033e-04	ci right 8.896386e-04	k: 395	n:490000
Cons ci ratio: 4.725529e-02	ci left: 1.352161e-02	ci right 1.417804e-02	k: 6785	n:490000
KS ci ratio: 5.735558e-02	ci left: 9.171933e-03	ci right 9.715524e-03	k: 4626	n:490000
OR2S2   490000 perm   178 sec   (2760 perm/sec)   p_kst 9.440816e-03   p_cons 1.384694e-02   p_joint 8.061224e-04

Joint ci ratio: 2.545708e-01	ci left: 4.137087e-04	ci right 5.362007e-04	k: 236	n:500000
Cons ci ratio: 4.680946e-02	ci left: 1.350811e-02	ci right 1.415754e-02	k: 6915	n:500000
KS ci ratio: 5.683644e-02	ci left: 9.156065e-03	ci right 9.693643e-03	k: 4711	n:500000
OR2S2   500000 perm   183 sec   (2730 perm/sec)   p_kst 9.422000e-03   p_cons 1.383000e-02   p_joint 4.720000e-04

Joint ci ratio: 1.639549e-01	ci left: 1.027811e-03	ci right 1.213225e-03	k: 570	n:510000
Cons ci ratio: 4.636600e-02	ci left: 1.350099e-02	ci right 1.414376e-02	k: 7048	n:510000
KS ci ratio: 5.619532e-02	ci left: 9.185310e-03	ci right 9.718324e-03	k: 4819	n:510000
OR2S2   510000 perm   189 sec   (2700 perm/sec)   p_kst 9.449020e-03   p_cons 1.381961e-02   p_joint 1.117647e-03

Joint ci ratio: 2.493641e-01	ci left: 4.158134e-04	ci right 5.360200e-04	k: 246	n:520000
Cons ci ratio: 4.592519e-02	ci left: 1.349988e-02	ci right 1.413632e-02	k: 7184	n:520000
KS ci ratio: 5.567243e-02	ci left: 9.181221e-03	ci right 9.708881e-03	k: 4910	n:520000
OR2S2   520000 perm   195 sec   (2672 perm/sec)   p_kst 9.442308e-03   p_cons 1.381538e-02   p_joint 4.730769e-04

Joint ci ratio: 2.463892e-01	ci left: 4.185856e-04	ci right 5.379289e-04	k: 252	n:530000
Cons ci ratio: 4.544011e-02	ci left: 1.353242e-02	ci right 1.416348e-02	k: 7338	n:530000
KS ci ratio: 5.520288e-02	ci left: 9.164282e-03	ci right 9.686385e-03	k: 4994	n:530000
OR2S2   530000 perm   201 sec   (2643 perm/sec)   p_kst 9.422642e-03   p_cons 1.384528e-02   p_joint 4.754717e-04

Joint ci ratio: 2.439900e-01	ci left: 4.195244e-04	ci right 5.377942e-04	k: 257	n:540000
Cons ci ratio: 4.501579e-02	ci left: 1.353631e-02	ci right 1.416151e-02	k: 7477	n:540000
KS ci ratio: 5.475589e-02	ci left: 9.144335e-03	ci right 9.660949e-03	k: 5076	n:540000
OR2S2   540000 perm   206 sec   (2616 perm/sec)   p_kst 9.400000e-03   p_cons 1.384630e-02   p_joint 4.759259e-04

Joint ci ratio: 2.971272e-01	ci left: 2.694250e-04	ci right 3.650589e-04	k: 173	n:550000
Cons ci ratio: 4.459126e-02	ci left: 1.354729e-02	ci right 1.416694e-02	k: 7620	n:550000
KS ci ratio: 5.428242e-02	ci left: 9.137686e-03	ci right 9.649320e-03	k: 5165	n:550000
OR2S2   550000 perm   212 sec   (2589 perm/sec)   p_kst 9.390909e-03   p_cons 1.385455e-02   p_joint 3.145455e-04

Joint ci ratio: 2.945984e-01	ci left: 2.695734e-04	ci right 3.642935e-04	k: 176	n:560000
Cons ci ratio: 4.418430e-02	ci left: 1.355436e-02	ci right 1.416854e-02	k: 7761	n:560000
KS ci ratio: 5.380036e-02	ci left: 9.138340e-03	ci right 9.645326e-03	k: 5258	n:560000
OR2S2   560000 perm   219 sec   (2562 perm/sec)   p_kst 9.389286e-03   p_cons 1.385893e-02   p_joint 3.142857e-04

Joint ci ratio: 2.358989e-01	ci left: 4.271254e-04	ci right 5.429624e-04	k: 275	n:570000
Cons ci ratio: 4.377424e-02	ci left: 1.356989e-02	ci right 1.417892e-02	k: 7907	n:570000
KS ci ratio: 5.332590e-02	ci left: 9.140722e-03	ci right 9.643231e-03	k: 5352	n:570000
OR2S2   570000 perm   225 sec   (2537 perm/sec)   p_kst 9.389474e-03   p_cons 1.387193e-02   p_joint 4.824561e-04

Joint ci ratio: 1.419132e-01	ci left: 1.220547e-03	ci right 1.408629e-03	k: 761	n:580000
Cons ci ratio: 4.338085e-02	ci left: 1.358150e-02	ci right 1.418544e-02	k: 8051	n:580000
KS ci ratio: 5.283929e-02	ci left: 9.151549e-03	ci right 9.649922e-03	k: 5451	n:580000
OR2S2   580000 perm   231 sec   (2511 perm/sec)   p_kst 9.398276e-03   p_cons 1.388103e-02   p_joint 1.312069e-03

Joint ci ratio: 1.997163e-01	ci left: 5.873884e-04	ci right 7.192898e-04	k: 384	n:590000
Cons ci ratio: 4.302451e-02	ci left: 1.357597e-02	ci right 1.417458e-02	k: 8185	n:590000
KS ci ratio: 5.232296e-02	ci left: 9.177085e-03	ci right 9.671818e-03	k: 5559	n:590000
OR2S2   590000 perm   237 sec   (2487 perm/sec)   p_kst 9.422034e-03   p_cons 1.387288e-02   p_joint 6.508475e-04

Joint ci ratio: 1.974217e-01	ci left: 5.918530e-04	ci right 7.230462e-04	k: 393	n:600000
Cons ci ratio: 4.267420e-02	ci left: 1.357229e-02	ci right 1.416575e-02	k: 8320	n:600000
KS ci ratio: 5.191865e-02	ci left: 9.167243e-03	ci right 9.657512e-03	k: 5646	n:600000
OR2S2   600000 perm   244 sec   (2462 perm/sec)   p_kst 9.410000e-03   p_cons 1.386667e-02   p_joint 6.550000e-04

Joint ci ratio: 1.740208e-01	ci left: 7.588235e-04	ci right 9.050006e-04	k: 506	n:610000
Cons ci ratio: 4.233739e-02	ci left: 1.356551e-02	ci right 1.415387e-02	k: 8453	n:610000
KS ci ratio: 5.152812e-02	ci left: 9.156119e-03	ci right 9.642000e-03	k: 5732	n:610000
OR2S2   610000 perm   250 sec   (2439 perm/sec)   p_kst 9.396721e-03   p_cons 1.385738e-02   p_joint 8.295082e-04

Joint ci ratio: 1.731695e-01	ci left: 7.542984e-04	ci right 8.988186e-04	k: 511	n:620000
Cons ci ratio: 4.201836e-02	ci left: 1.355258e-02	ci right 1.413584e-02	k: 8582	n:620000
KS ci ratio: 5.119958e-02	ci left: 9.126258e-03	ci right 9.607375e-03	k: 5806	n:620000
OR2S2   620000 perm   257 sec   (2416 perm/sec)   p_kst 9.364516e-03   p_cons 1.384194e-02   p_joint 8.241935e-04

Joint ci ratio: 1.930612e-01	ci left: 5.908445e-04	ci right 7.185817e-04	k: 411	n:630000
Cons ci ratio: 4.169430e-02	ci left: 1.354793e-02	ci right 1.412639e-02	k: 8716	n:630000
KS ci ratio: 5.079883e-02	ci left: 9.125566e-03	ci right 9.602771e-03	k: 5898	n:630000
OR2S2   630000 perm   263 sec   (2395 perm/sec)   p_kst 9.361905e-03   p_cons 1.383492e-02   p_joint 6.523810e-04

Joint ci ratio: 2.225869e-01	ci left: 4.304854e-04	ci right 5.397438e-04	k: 309	n:640000
Cons ci ratio: 4.137999e-02	ci left: 1.354190e-02	ci right 1.411564e-02	k: 8849	n:640000
KS ci ratio: 5.041584e-02	ci left: 9.121824e-03	ci right 9.595133e-03	k: 5988	n:640000
OR2S2   640000 perm   270 sec   (2373 perm/sec)   p_kst 9.356250e-03   p_cons 1.382656e-02   p_joint 4.828125e-04

Joint ci ratio: 1.690905e-01	ci left: 7.562991e-04	ci right 8.974417e-04	k: 536	n:650000
Cons ci ratio: 4.103334e-02	ci left: 1.356196e-02	ci right 1.413162e-02	k: 8999	n:650000
KS ci ratio: 4.991720e-02	ci left: 9.163793e-03	ci right 9.634441e-03	k: 6108	n:650000
OR2S2   650000 perm   277 sec   (2351 perm/sec)   p_kst 9.396923e-03   p_cons 1.384462e-02   p_joint 8.246154e-04

Joint ci ratio: 1.681540e-01	ci left: 7.535472e-04	ci right 8.933184e-04	k: 542	n:660000
Cons ci ratio: 4.075627e-02	ci left: 1.354093e-02	ci right 1.410577e-02	k: 9122	n:660000
KS ci ratio: 4.950129e-02	ci left: 9.179070e-03	ci right 9.646463e-03	k: 6211	n:660000
OR2S2   660000 perm   283 sec   (2329 perm/sec)   p_kst 9.410606e-03   p_cons 1.382121e-02   p_joint 8.212121e-04

Joint ci ratio: 1.664758e-01	ci left: 7.580308e-04	ci right 8.970899e-04	k: 553	n:670000
Cons ci ratio: 4.047364e-02	ci left: 1.352793e-02	ci right 1.408823e-02	k: 9250	n:670000
KS ci ratio: 4.907600e-02	ci left: 9.201279e-03	ci right 9.665664e-03	k: 6319	n:670000
OR2S2   670000 perm   290 sec   (2308 perm/sec)   p_kst 9.431343e-03   p_cons 1.380597e-02   p_joint 8.253731e-04

Joint ci ratio: 1.859741e-01	ci left: 5.922270e-04	ci right 7.150329e-04	k: 443	n:680000
Cons ci ratio: 4.018595e-02	ci left: 1.352260e-02	ci right 1.407861e-02	k: 9383	n:680000
KS ci ratio: 4.859665e-02	ci left: 9.247550e-03	ci right 9.709584e-03	k: 6444	n:680000
OR2S2   680000 perm   297 sec   (2288 perm/sec)   p_kst 9.476471e-03   p_cons 1.379853e-02   p_joint 6.514706e-04

Joint ci ratio: 1.855572e-01	ci left: 5.864076e-04	ci right 7.077035e-04	k: 445	n:690000
Cons ci ratio: 3.993197e-02	ci left: 1.349879e-02	ci right 1.405023e-02	k: 9503	n:690000
KS ci ratio: 4.823868e-02	ci left: 9.250974e-03	ci right 9.709680e-03	k: 6540	n:690000
OR2S2   690000 perm   304 sec   (2267 perm/sec)   p_kst 9.478261e-03   p_cons 1.377246e-02   p_joint 6.449275e-04

Joint ci ratio: 2.144415e-01	ci left: 4.259965e-04	ci right 5.296388e-04	k: 333	n:700000
Cons ci ratio: 3.961394e-02	ci left: 1.352235e-02	ci right 1.407025e-02	k: 9656	n:700000
KS ci ratio: 4.787757e-02	ci left: 9.258548e-03	ci right 9.714097e-03	k: 6639	n:700000
OR2S2   700000 perm   311 sec   (2248 perm/sec)   p_kst 9.484286e-03   p_cons 1.379429e-02   p_joint 4.757143e-04

Joint ci ratio: 2.138028e-01	ci left: 4.226624e-04	ci right 5.251470e-04	k: 335	n:710000
Cons ci ratio: 3.936039e-02	ci left: 1.350621e-02	ci right 1.404988e-02	k: 9781	n:710000
KS ci ratio: 4.753514e-02	ci left: 9.261744e-03	ci right 9.714103e-03	k: 6735	n:710000
OR2S2   710000 perm   319 sec   (2228 perm/sec)   p_kst 9.485915e-03   p_cons 1.377606e-02   p_joint 4.718310e-04

Joint ci ratio: 1.813370e-01	ci left: 5.898015e-04	ci right 7.087202e-04	k: 466	n:720000
Cons ci ratio: 3.905572e-02	ci left: 1.352905e-02	ci right 1.406932e-02	k: 9934	n:720000
KS ci ratio: 4.720692e-02	ci left: 9.262118e-03	ci right 9.711286e-03	k: 6829	n:720000
OR2S2   720000 perm   326 sec   (2208 perm/sec)   p_kst 9.484722e-03   p_cons 1.379722e-02   p_joint 6.472222e-04

Joint ci ratio: 1.809505e-01	ci left: 5.843374e-04	ci right 7.018757e-04	k: 468	n:730000
Cons ci ratio: 3.880094e-02	ci left: 1.352142e-02	ci right 1.405779e-02	k: 10065	n:730000
KS ci ratio: 4.691279e-02	ci left: 9.251661e-03	ci right 9.697451e-03	k: 6915	n:730000
OR2S2   730000 perm   333 sec   (2189 perm/sec)   p_kst 9.472603e-03   p_cons 1.378767e-02   p_joint 6.410959e-04

Joint ci ratio: 1.792386e-01	ci left: 5.880549e-04	ci right 7.051006e-04	k: 477	n:740000
Cons ci ratio: 3.853193e-02	ci left: 1.352740e-02	ci right 1.406020e-02	k: 10206	n:740000
KS ci ratio: 4.659050e-02	ci left: 9.254852e-03	ci right 9.697650e-03	k: 7011	n:740000
OR2S2   740000 perm   341 sec   (2171 perm/sec)   p_kst 9.474324e-03   p_cons 1.379189e-02   p_joint 6.445946e-04

Joint ci ratio: 1.783086e-01	ci left: 5.865825e-04	ci right 7.026640e-04	k: 482	n:750000
Cons ci ratio: 3.825344e-02	ci left: 1.354379e-02	ci right 1.407330e-02	k: 10355	n:750000
KS ci ratio: 4.628463e-02	ci left: 9.254014e-03	ci right 9.693787e-03	k: 7104	n:750000
OR2S2   750000 perm   348 sec   (2153 perm/sec)   p_kst 9.472000e-03   p_cons 1.380667e-02   p_joint 6.426667e-04

Joint ci ratio: 1.770303e-01	ci left: 5.876653e-04	ci right 7.030381e-04	k: 489	n:760000
Cons ci ratio: 3.799008e-02	ci left: 1.355326e-02	ci right 1.407941e-02	k: 10499	n:760000
KS ci ratio: 4.596859e-02	ci left: 9.259711e-03	ci right 9.696671e-03	k: 7202	n:760000
OR2S2   760000 perm   356 sec   (2134 perm/sec)   p_kst 9.476316e-03   p_cons 1.381447e-02   p_joint 6.434211e-04

Joint ci ratio: 2.048528e-01	ci left: 4.266474e-04	ci right 5.252259e-04	k: 365	n:770000
Cons ci ratio: 3.774287e-02	ci left: 1.355476e-02	ci right 1.407748e-02	k: 10637	n:770000
KS ci ratio: 4.570953e-02	ci left: 9.244726e-03	ci right 9.678456e-03	k: 7284	n:770000
OR2S2   770000 perm   364 sec   (2116 perm/sec)   p_kst 9.459740e-03   p_cons 1.381429e-02   p_joint 4.740260e-04

Joint ci ratio: 2.031939e-01	ci left: 4.284769e-04	ci right 5.265769e-04	k: 371	n:780000
Cons ci ratio: 3.750395e-02	ci left: 1.355370e-02	ci right 1.407299e-02	k: 10773	n:780000
KS ci ratio: 4.538334e-02	ci left: 9.259288e-03	ci right 9.690520e-03	k: 7389	n:780000
OR2S2   780000 perm   372 sec   (2099 perm/sec)   p_kst 9.473077e-03   p_cons 1.381154e-02   p_joint 4.756410e-04

Joint ci ratio: 2.029219e-01	ci left: 4.242545e-04	ci right 5.212416e-04	k: 372	n:790000
Cons ci ratio: 3.726778e-02	ci left: 1.355393e-02	ci right 1.406989e-02	k: 10910	n:790000
KS ci ratio: 4.515535e-02	ci left: 9.235942e-03	ci right 9.663869e-03	k: 7464	n:790000
OR2S2   790000 perm   380 sec   (2081 perm/sec)   p_kst 9.448101e-03   p_cons 1.381013e-02   p_joint 4.708861e-04

Joint ci ratio: 2.002546e-01	ci left: 4.308206e-04	ci right 5.278560e-04	k: 382	n:800000
Cons ci ratio: 3.705302e-02	ci left: 1.354178e-02	ci right 1.405425e-02	k: 11037	n:800000
KS ci ratio: 4.489771e-02	ci left: 9.226781e-03	ci right 9.651782e-03	k: 7550	n:800000
OR2S2   800000 perm   388 sec   (2064 perm/sec)   p_kst 9.437500e-03   p_cons 1.379625e-02   p_joint 4.775000e-04

Joint ci ratio: 1.989601e-01	ci left: 4.313661e-04	ci right 5.278202e-04	k: 387	n:810000
Cons ci ratio: 3.683191e-02	ci left: 1.353728e-02	ci right 1.404645e-02	k: 11170	n:810000
KS ci ratio: 4.463264e-02	ci left: 9.222737e-03	ci right 9.644980e-03	k: 7640	n:810000
OR2S2   810000 perm   396 sec   (2047 perm/sec)   p_kst 9.432099e-03   p_cons 1.379012e-02   p_joint 4.777778e-04

Joint ci ratio: 1.979424e-01	ci left: 4.307412e-04	ci right 5.265035e-04	k: 391	n:820000
Cons ci ratio: 3.659501e-02	ci left: 1.354740e-02	ci right 1.405361e-02	k: 11315	n:820000
KS ci ratio: 4.436062e-02	ci left: 9.223624e-03	ci right 9.643267e-03	k: 7734	n:820000
OR2S2   820000 perm   404 sec   (2031 perm/sec)   p_kst 9.431707e-03   p_cons 1.379878e-02   p_joint 4.768293e-04

Joint ci ratio: 1.959526e-01	ci left: 4.347150e-04	ci right 5.302732e-04	k: 399	n:830000
Cons ci ratio: 3.636262e-02	ci left: 1.355728e-02	ci right 1.406058e-02	k: 11460	n:830000
KS ci ratio: 4.408215e-02	ci left: 9.229263e-03	ci right 9.646461e-03	k: 7832	n:830000
OR2S2   830000 perm   412 sec   (2014 perm/sec)   p_kst 9.436145e-03   p_cons 1.380723e-02   p_joint 4.807229e-04

Joint ci ratio: 1.942600e-01	ci left: 4.374661e-04	ci right 5.327002e-04	k: 406	n:840000
Cons ci ratio: 3.612199e-02	ci left: 1.357638e-02	ci right 1.407698e-02	k: 11613	n:840000
KS ci ratio: 4.380328e-02	ci left: 9.237131e-03	ci right 9.651976e-03	k: 7932	n:840000
OR2S2   840000 perm   420 sec   (1998 perm/sec)   p_kst 9.442857e-03   p_cons 1.382500e-02   p_joint 4.833333e-04

Joint ci ratio: 2.367775e-01	ci left: 2.842091e-04	ci right 3.616159e-04	k: 273	n:850000
Cons ci ratio: 3.591393e-02	ci left: 1.357405e-02	ci right 1.407162e-02	k: 11748	n:850000
KS ci ratio: 4.355153e-02	ci left: 9.235512e-03	ci right 9.647841e-03	k: 8024	n:850000
OR2S2   850000 perm   429 sec   (1981 perm/sec)   p_kst 9.440000e-03   p_cons 1.382118e-02   p_joint 3.211765e-04

Joint ci ratio: 2.354919e-01	ci left: 2.841863e-04	ci right 3.611054e-04	k: 276	n:860000
Cons ci ratio: 3.568356e-02	ci left: 1.359138e-02	ci right 1.408632e-02	k: 11900	n:860000
KS ci ratio: 4.329062e-02	ci left: 9.239689e-03	ci right 9.649672e-03	k: 8121	n:860000
OR2S2   860000 perm   437 sec   (1966 perm/sec)   p_kst 9.443023e-03   p_cons 1.383721e-02   p_joint 3.209302e-04

Joint ci ratio: 2.346465e-01	ci left: 2.830833e-04	ci right 3.593888e-04	k: 278	n:870000
Cons ci ratio: 3.549491e-02	ci left: 1.357983e-02	ci right 1.407169e-02	k: 12027	n:870000
KS ci ratio: 4.301585e-02	ci left: 9.251737e-03	ci right 9.659585e-03	k: 8225	n:870000
OR2S2   870000 perm   446 sec   (1951 perm/sec)   p_kst 9.454023e-03   p_cons 1.382414e-02   p_joint 3.195402e-04

Joint ci ratio: 2.329822e-01	ci left: 2.841456e-04	ci right 3.601160e-04	k: 282	n:880000
Cons ci ratio: 3.530627e-02	ci left: 1.357081e-02	ci right 1.405967e-02	k: 12156	n:880000
KS ci ratio: 4.279035e-02	ci left: 9.244406e-03	ci right 9.649742e-03	k: 8312	n:880000
OR2S2   880000 perm   455 sec   (1936 perm/sec)   p_kst 9.445455e-03   p_cons 1.381364e-02   p_joint 3.204545e-04

Joint ci ratio: 2.325720e-01	ci left: 2.820110e-04	ci right 3.572588e-04	k: 283	n:890000
Cons ci ratio: 3.512206e-02	ci left: 1.356088e-02	ci right 1.404679e-02	k: 12284	n:890000
KS ci ratio: 4.254792e-02	ci left: 9.246140e-03	ci right 9.649198e-03	k: 8407	n:890000
OR2S2   890000 perm   464 sec   (1920 perm/sec)   p_kst 9.446067e-03   p_cons 1.380225e-02   p_joint 3.179775e-04

Joint ci ratio: 2.309511e-01	ci left: 2.830640e-04	ci right 3.579913e-04	k: 287	n:900000
Cons ci ratio: 3.492074e-02	ci left: 1.356660e-02	ci right 1.404987e-02	k: 12426	n:900000
KS ci ratio: 4.229198e-02	ci left: 9.255537e-03	ci right 9.656519e-03	k: 8509	n:900000
OR2S2   900000 perm   472 sec   (1906 perm/sec)   p_kst 9.454444e-03   p_cons 1.380667e-02   p_joint 3.188889e-04

Joint ci ratio: 2.297576e-01	ci left: 2.830599e-04	ci right 3.575440e-04	k: 290	n:910000
Cons ci ratio: 3.476353e-02	ci left: 1.354061e-02	ci right 1.402074e-02	k: 12539	n:910000
KS ci ratio: 4.208751e-02	ci left: 9.244073e-03	ci right 9.642575e-03	k: 8592	n:910000
OR2S2   910000 perm   481 sec   (1892 perm/sec)   p_kst 9.441758e-03   p_cons 1.377912e-02   p_joint 3.186813e-04

Joint ci ratio: 2.289723e-01	ci left: 2.820321e-04	ci right 3.559562e-04	k: 292	n:920000
Cons ci ratio: 3.456967e-02	ci left: 1.354536e-02	ci right 1.402292e-02	k: 12680	n:920000
KS ci ratio: 4.188353e-02	ci left: 9.233939e-03	ci right 9.630028e-03	k: 8676	n:920000
OR2S2   920000 perm   490 sec   (1878 perm/sec)   p_kst 9.430435e-03   p_cons 1.378261e-02   p_joint 3.173913e-04

Joint ci ratio: 2.274250e-01	ci left: 2.830547e-04	ci right 3.566753e-04	k: 296	n:930000
Cons ci ratio: 3.439533e-02	ci left: 1.353723e-02	ci right 1.401205e-02	k: 12809	n:930000
KS ci ratio: 4.167769e-02	ci left: 9.226156e-03	ci right 9.619920e-03	k: 8762	n:930000
OR2S2   930000 perm   499 sec   (1864 perm/sec)   p_kst 9.421505e-03   p_cons 1.377312e-02   p_joint 3.182796e-04

Joint ci ratio: 1.835262e-01	ci left: 4.405919e-04	ci right 5.306178e-04	k: 455	n:940000
Cons ci ratio: 3.422763e-02	ci left: 1.352610e-02	ci right 1.399818e-02	k: 12935	n:940000
KS ci ratio: 4.144177e-02	ci left: 9.233283e-03	ci right 9.625068e-03	k: 8862	n:940000
OR2S2   940000 perm   508 sec   (1850 perm/sec)   p_kst 9.427660e-03   p_cons 1.376064e-02   p_joint 4.840426e-04

Joint ci ratio: 1.829256e-01	ci left: 4.389671e-04	ci right 5.283350e-04	k: 458	n:950000
Cons ci ratio: 3.405442e-02	ci left: 1.352148e-02	ci right 1.399096e-02	k: 13067	n:950000
KS ci ratio: 4.123072e-02	ci left: 9.230890e-03	ci right 9.620531e-03	k: 8953	n:950000
OR2S2   950000 perm   517 sec   (1836 perm/sec)   p_kst 9.424211e-03   p_cons 1.375474e-02   p_joint 4.821053e-04

Joint ci ratio: 1.817415e-01	ci left: 4.403593e-04	ci right 5.293664e-04	k: 464	n:960000
Cons ci ratio: 3.389163e-02	ci left: 1.351077e-02	ci right 1.397759e-02	k: 13193	n:960000
KS ci ratio: 4.102515e-02	ci left: 9.227521e-03	ci right 9.615031e-03	k: 9043	n:960000
OR2S2   960000 perm   526 sec   (1824 perm/sec)   p_kst 9.419792e-03   p_cons 1.374271e-02   p_joint 4.833333e-04

Joint ci ratio: 1.809649e-01	ci left: 4.397560e-04	ci right 5.282197e-04	k: 468	n:970000
Cons ci ratio: 3.369015e-02	ci left: 1.353300e-02	ci right 1.399775e-02	k: 13351	n:970000
KS ci ratio: 4.080909e-02	ci left: 9.230348e-03	ci right 9.615889e-03	k: 9139	n:970000
OR2S2   970000 perm   536 sec   (1811 perm/sec)   p_kst 9.421649e-03   p_cons 1.376392e-02   p_joint 4.824742e-04

Joint ci ratio: 1.801982e-01	ci left: 4.391658e-04	ci right 5.270957e-04	k: 472	n:980000
Cons ci ratio: 3.353250e-02	ci left: 1.352239e-02	ci right 1.398457e-02	k: 13477	n:980000
KS ci ratio: 4.061195e-02	ci left: 9.226053e-03	ci right 9.609509e-03	k: 9228	n:980000
OR2S2   980000 perm   545 sec   (1799 perm/sec)   p_kst 9.416327e-03   p_cons 1.375204e-02   p_joint 4.816327e-04

Joint ci ratio: 1.790659e-01	ci left: 4.405180e-04	ci right 5.281043e-04	k: 478	n:990000
Cons ci ratio: 3.336959e-02	ci left: 1.351802e-02	ci right 1.397776e-02	k: 13609	n:990000
KS ci ratio: 4.043298e-02	ci left: 9.214848e-03	ci right 9.596111e-03	k: 9310	n:990000
OR2S2   990000 perm   554 sec   (1787 perm/sec)   p_kst 9.404040e-03   p_cons 1.374646e-02   p_joint 4.828283e-04

Joint ci ratio: 1.786935e-01	ci left: 4.380232e-04	ci right 5.249127e-04	k: 480	n:1000000
Cons ci ratio: 3.321393e-02	ci left: 1.350977e-02	ci right 1.396705e-02	k: 13737	n:1000000
KS ci ratio: 4.027150e-02	ci left: 9.196941e-03	ci right 9.575909e-03	k: 9385	n:1000000
OR2S2   1000000 perm   563 sec   (1775 perm/sec)   p_kst 9.385000e-03   p_cons 1.373700e-02   p_joint 4.800000e-04

Joint ci ratio: 1.775892e-01	ci left: 4.393620e-04	ci right 5.259208e-04	k: 486	n:1010000
Cons ci ratio: 3.307252e-02	ci left: 1.349188e-02	ci right 1.394656e-02	k: 13855	n:1010000
KS ci ratio: 4.006708e-02	ci left: 9.199978e-03	ci right 9.577102e-03	k: 9481	n:1010000
OR2S2   1010000 perm   573 sec   (1762 perm/sec)   p_kst 9.387129e-03   p_cons 1.371782e-02   p_joint 4.811881e-04

Joint ci ratio: 1.761481e-01	ci left: 4.425506e-04	ci right 5.289546e-04	k: 494	n:1020000
Cons ci ratio: 3.290188e-02	ci left: 1.349962e-02	ci right 1.395217e-02	k: 13999	n:1020000
KS ci ratio: 3.987414e-02	ci left: 9.199076e-03	ci right 9.574306e-03	k: 9573	n:1020000
OR2S2   1020000 perm   583 sec   (1750 perm/sec)   p_kst 9.385294e-03   p_cons 1.372451e-02   p_joint 4.843137e-04

Joint ci ratio: 1.749154e-01	ci left: 4.447515e-04	ci right 5.309135e-04	k: 501	n:1030000
Cons ci ratio: 3.274795e-02	ci left: 1.349565e-02	ci right 1.394592e-02	k: 14131	n:1030000
KS ci ratio: 3.970885e-02	ci left: 9.186661e-03	ci right 9.559795e-03	k: 9653	n:1030000
OR2S2   1030000 perm   593 sec   (1738 perm/sec)   p_kst 9.371845e-03   p_cons 1.371942e-02   p_joint 4.864078e-04

Joint ci ratio: 1.745683e-01	ci left: 4.423140e-04	ci right 5.278157e-04	k: 503	n:1040000
Cons ci ratio: 3.257185e-02	ci left: 1.351180e-02	ci right 1.396014e-02	k: 14284	n:1040000
KS ci ratio: 3.955996e-02	ci left: 9.167823e-03	ci right 9.538764e-03	k: 9726	n:1040000
OR2S2   1040000 perm   602 sec   (1727 perm/sec)   p_kst 9.351923e-03   p_cons 1.373462e-02   p_joint 4.836538e-04

Joint ci ratio: 1.740512e-01	ci left: 4.408340e-04	ci right 5.257706e-04	k: 506	n:1050000
Cons ci ratio: 3.239970e-02	ci left: 1.352671e-02	ci right 1.397312e-02	k: 14436	n:1050000
KS ci ratio: 3.939246e-02	ci left: 9.158776e-03	ci right 9.527747e-03	k: 9809	n:1050000
OR2S2   1050000 perm   612 sec   (1716 perm/sec)   p_kst 9.341905e-03   p_cons 1.374857e-02   p_joint 4.819048e-04

Joint ci ratio: 2.131858e-01	ci left: 2.848877e-04	ci right 3.537400e-04	k: 337	n:1060000
Cons ci ratio: 3.225380e-02	ci left: 1.352168e-02	ci right 1.396588e-02	k: 14567	n:1060000
KS ci ratio: 3.917911e-02	ci left: 9.172326e-03	ci right 9.539796e-03	k: 9916	n:1060000
OR2S2   1060000 perm   622 sec   (1705 perm/sec)   p_kst 9.354717e-03   p_cons 1.374245e-02   p_joint 3.179245e-04

Joint ci ratio: 2.122460e-01	ci left: 2.848796e-04	ci right 3.533869e-04	k: 340	n:1070000
Cons ci ratio: 3.210099e-02	ci left: 1.352417e-02	ci right 1.396631e-02	k: 14706	n:1070000
KS ci ratio: 3.901441e-02	ci left: 9.164340e-03	ci right 9.529912e-03	k: 10000	n:1070000
OR2S2   1070000 perm   632 sec   (1694 perm/sec)   p_kst 9.345794e-03   p_cons 1.374393e-02   p_joint 3.177570e-04

Joint ci ratio: 2.107066e-01	ci left: 2.866263e-04	ci right 3.549892e-04	k: 345	n:1080000
Cons ci ratio: 3.197000e-02	ci left: 1.351009e-02	ci right 1.394993e-02	k: 14827	n:1080000
KS ci ratio: 3.882845e-02	ci left: 9.167509e-03	ci right 9.531426e-03	k: 10096	n:1080000
OR2S2   1080000 perm   642 sec   (1683 perm/sec)   p_kst 9.348148e-03   p_cons 1.372870e-02   p_joint 3.194444e-04

Joint ci ratio: 2.101004e-01	ci left: 2.857349e-04	ci right 3.536638e-04	k: 347	n:1090000
Cons ci ratio: 3.182548e-02	ci left: 1.350901e-02	ci right 1.394679e-02	k: 14962	n:1090000
KS ci ratio: 3.863556e-02	ci left: 9.175167e-03	ci right 9.537539e-03	k: 10197	n:1090000
OR2S2   1090000 perm   652 sec   (1672 perm/sec)   p_kst 9.355046e-03   p_cons 1.372661e-02   p_joint 3.183486e-04

Joint ci ratio: 2.094994e-01	ci left: 2.848600e-04	ci right 3.523623e-04	k: 349	n:1100000
Cons ci ratio: 3.167122e-02	ci left: 1.351787e-02	ci right 1.395378e-02	k: 15108	n:1100000
KS ci ratio: 3.849649e-02	ci left: 9.158379e-03	ci right 9.518757e-03	k: 10271	n:1100000
OR2S2   1100000 perm   662 sec   (1662 perm/sec)   p_kst 9.337273e-03   p_cons 1.373455e-02   p_joint 3.172727e-04

Joint ci ratio: 2.080186e-01	ci left: 2.865627e-04	ci right 3.539275e-04	k: 354	n:1110000
Cons ci ratio: 3.151603e-02	ci left: 1.352927e-02	ci right 1.396337e-02	k: 15257	n:1110000
KS ci ratio: 3.830848e-02	ci left: 9.165989e-03	ci right 9.524866e-03	k: 10372	n:1110000
OR2S2   1110000 perm   672 sec   (1652 perm/sec)   p_kst 9.344144e-03   p_cons 1.374505e-02   p_joint 3.189189e-04

Joint ci ratio: 2.059972e-01	ci left: 2.899302e-04	ci right 3.573409e-04	k: 361	n:1120000
Cons ci ratio: 3.136929e-02	ci left: 1.353514e-02	ci right 1.396738e-02	k: 15400	n:1120000
KS ci ratio: 3.812504e-02	ci left: 9.172583e-03	ci right 9.529961e-03	k: 10472	n:1120000
OR2S2   1120000 perm   682 sec   (1642 perm/sec)   p_kst 9.350000e-03   p_cons 1.375000e-02   p_joint 3.223214e-04

Joint ci ratio: 1.665039e-01	ci left: 4.494459e-04	ci right 5.319106e-04	k: 553	n:1130000
Cons ci ratio: 3.123070e-02	ci left: 1.353565e-02	ci right 1.396596e-02	k: 15537	n:1130000
KS ci ratio: 3.794058e-02	ci left: 9.180818e-03	ci right 9.536748e-03	k: 10574	n:1130000
OR2S2   1130000 perm   692 sec   (1632 perm/sec)   p_kst 9.357522e-03   p_cons 1.374956e-02   p_joint 4.893805e-04

Joint ci ratio: 2.045893e-01	ci left: 2.890042e-04	ci right 3.556829e-04	k: 366	n:1140000
Cons ci ratio: 3.108790e-02	ci left: 1.354138e-02	ci right 1.396986e-02	k: 15680	n:1140000
KS ci ratio: 3.776056e-02	ci left: 9.188043e-03	ci right 9.542527e-03	k: 10675	n:1140000
OR2S2   1140000 perm   703 sec   (1622 perm/sec)   p_kst 9.364035e-03   p_cons 1.375439e-02   p_joint 3.210526e-04

Joint ci ratio: 2.029369e-01	ci left: 2.914423e-04	ci right 3.580732e-04	k: 372	n:1150000
Cons ci ratio: 3.093812e-02	ci left: 1.355478e-02	ci right 1.398159e-02	k: 15832	n:1150000
KS ci ratio: 3.760070e-02	ci left: 9.186532e-03	ci right 9.539424e-03	k: 10766	n:1150000
OR2S2   1150000 perm   713 sec   (1613 perm/sec)   p_kst 9.361739e-03   p_cons 1.376696e-02   p_joint 3.234783e-04

Joint ci ratio: 2.023951e-01	ci left: 2.905665e-04	ci right 3.567979e-04	k: 374	n:1160000
Cons ci ratio: 3.082373e-02	ci left: 1.353887e-02	ci right 1.396357e-02	k: 15950	n:1160000
KS ci ratio: 3.742545e-02	ci left: 9.193590e-03	ci right 9.545073e-03	k: 10867	n:1160000
OR2S2   1160000 perm   724 sec   (1603 perm/sec)   p_kst 9.368103e-03   p_cons 1.375000e-02   p_joint 3.224138e-04

Joint ci ratio: 1.642949e-01	ci left: 4.463700e-04	ci right 5.270764e-04	k: 568	n:1170000
Cons ci ratio: 3.068255e-02	ci left: 1.354783e-02	ci right 1.397082e-02	k: 16097	n:1170000
KS ci ratio: 3.726121e-02	ci left: 9.196298e-03	ci right 9.546308e-03	k: 10963	n:1170000
OR2S2   1170000 perm   734 sec   (1594 perm/sec)   p_kst 9.370085e-03   p_cons 1.375812e-02   p_joint 4.854701e-04

Joint ci ratio: 2.015907e-01	ci left: 2.880554e-04	ci right 3.534213e-04	k: 377	n:1180000
Cons ci ratio: 3.057766e-02	ci left: 1.352636e-02	ci right 1.394722e-02	k: 16208	n:1180000
KS ci ratio: 3.712453e-02	ci left: 9.186368e-03	ci right 9.534690e-03	k: 11044	n:1180000
OR2S2   1180000 perm   745 sec   (1585 perm/sec)   p_kst 9.359322e-03   p_cons 1.373559e-02   p_joint 3.194915e-04

Joint ci ratio: 2.005324e-01	ci left: 2.888269e-04	ci right 3.539817e-04	k: 381	n:1190000
Cons ci ratio: 3.045776e-02	ci left: 1.351943e-02	ci right 1.393840e-02	k: 16336	n:1190000
KS ci ratio: 3.694913e-02	ci left: 9.196591e-03	ci right 9.543618e-03	k: 11149	n:1190000
OR2S2   1190000 perm   755 sec   (1575 perm/sec)   p_kst 9.368908e-03   p_cons 1.372773e-02   p_joint 3.201681e-04

Joint ci ratio: 2.002706e-01	ci left: 2.872115e-04	ci right 3.519070e-04	k: 382	n:1200000
Cons ci ratio: 3.032712e-02	ci left: 1.352338e-02	ci right 1.394064e-02	k: 16477	n:1200000
KS ci ratio: 3.680923e-02	ci left: 9.190132e-03	ci right 9.535575e-03	k: 11234	n:1200000
OR2S2   1200000 perm   766 sec   (1566 perm/sec)   p_kst 9.361667e-03   p_cons 1.373083e-02   p_joint 3.183333e-04

Joint ci ratio: 1.994908e-01	ci left: 2.871931e-04	ci right 3.516019e-04	k: 385	n:1210000
Cons ci ratio: 3.019999e-02	ci left: 1.352562e-02	ci right 1.394117e-02	k: 16616	n:1210000
KS ci ratio: 3.665456e-02	ci left: 9.191972e-03	ci right 9.536002e-03	k: 11329	n:1210000
OR2S2   1210000 perm   778 sec   (1556 perm/sec)   p_kst 9.362810e-03   p_cons 1.373223e-02   p_joint 3.181818e-04

Joint ci ratio: 1.992331e-01	ci left: 2.856178e-04	ci right 3.495805e-04	k: 386	n:1220000
Cons ci ratio: 3.008902e-02	ci left: 1.351482e-02	ci right 1.392848e-02	k: 16739	n:1220000
KS ci ratio: 3.648089e-02	ci left: 9.204345e-03	ci right 9.547171e-03	k: 11437	n:1220000
OR2S2   1220000 perm   789 sec   (1547 perm/sec)   p_kst 9.374590e-03   p_cons 1.372049e-02   p_joint 3.163934e-04

Joint ci ratio: 1.977062e-01	ci left: 2.879314e-04	ci right 3.518585e-04	k: 392	n:1230000
Cons ci ratio: 2.996395e-02	ci left: 1.351791e-02	ci right 1.392992e-02	k: 16879	n:1230000
KS ci ratio: 3.636693e-02	ci left: 9.187515e-03	ci right 9.528623e-03	k: 11509	n:1230000
OR2S2   1230000 perm   800 sec   (1538 perm/sec)   p_kst 9.356911e-03   p_cons 1.372276e-02   p_joint 3.186992e-04

Joint ci ratio: 1.972051e-01	ci left: 2.871426e-04	ci right 3.507134e-04	k: 394	n:1240000
Cons ci ratio: 2.982887e-02	ci left: 1.353136e-02	ci right 1.394189e-02	k: 17032	n:1240000
KS ci ratio: 3.623825e-02	ci left: 9.178950e-03	ci right 9.518509e-03	k: 11591	n:1240000
OR2S2   1240000 perm   811 sec   (1529 perm/sec)   p_kst 9.347581e-03   p_cons 1.373548e-02   p_joint 3.177419e-04

Joint ci ratio: 1.959686e-01	ci left: 2.886486e-04	ci right 3.521043e-04	k: 399	n:1250000
Cons ci ratio: 2.971578e-02	ci left: 1.352633e-02	ci right 1.393513e-02	k: 17162	n:1250000
KS ci ratio: 3.608597e-02	ci left: 9.183210e-03	ci right 9.521470e-03	k: 11689	n:1250000
OR2S2   1250000 perm   822 sec   (1520 perm/sec)   p_kst 9.351200e-03   p_cons 1.372960e-02   p_joint 3.192000e-04

Joint ci ratio: 1.954806e-01	ci left: 2.878672e-04	ci right 3.509749e-04	k: 401	n:1260000
Cons ci ratio: 2.960396e-02	ci left: 1.352139e-02	ci right 1.392847e-02	k: 17292	n:1260000
KS ci ratio: 3.596331e-02	ci left: 9.173246e-03	ci right 9.509967e-03	k: 11769	n:1260000
OR2S2   1260000 perm   834 sec   (1511 perm/sec)   p_kst 9.340476e-03   p_cons 1.372381e-02   p_joint 3.182540e-04

Joint ci ratio: 1.945152e-01	ci left: 2.885964e-04	ci right 3.515145e-04	k: 405	n:1270000
Cons ci ratio: 2.949597e-02	ci left: 1.351418e-02	ci right 1.391954e-02	k: 17419	n:1270000
KS ci ratio: 3.583733e-02	ci left: 9.165783e-03	ci right 9.501027e-03	k: 11852	n:1270000
OR2S2   1270000 perm   845 sec   (1502 perm/sec)   p_kst 9.332283e-03   p_cons 1.371575e-02   p_joint 3.188976e-04

Joint ci ratio: 1.938005e-01	ci left: 2.885716e-04	ci right 3.512258e-04	k: 408	n:1280000
Cons ci ratio: 2.937727e-02	ci left: 1.351795e-02	ci right 1.392176e-02	k: 17560	n:1280000
KS ci ratio: 3.570209e-02	ci left: 9.163859e-03	ci right 9.497742e-03	k: 11942	n:1280000
OR2S2   1280000 perm   857 sec   (1493 perm/sec)   p_kst 9.329687e-03   p_cons 1.371875e-02   p_joint 3.187500e-04

Joint ci ratio: 1.933285e-01	ci left: 2.878098e-04	ci right 3.501285e-04	k: 410	n:1290000
Cons ci ratio: 2.925749e-02	ci left: 1.352397e-02	ci right 1.392628e-02	k: 17704	n:1290000
KS ci ratio: 3.555048e-02	ci left: 9.171187e-03	ci right 9.503889e-03	k: 12044	n:1290000
OR2S2   1290000 perm   869 sec   (1485 perm/sec)   p_kst 9.336434e-03   p_cons 1.372403e-02   p_joint 3.178295e-04

Joint ci ratio: 1.923944e-01	ci left: 2.885243e-04	ci right 3.506605e-04	k: 414	n:1300000
Cons ci ratio: 2.915737e-02	ci left: 1.351310e-02	ci right 1.391369e-02	k: 17826	n:1300000
KS ci ratio: 3.540520e-02	ci left: 9.176119e-03	ci right 9.507611e-03	k: 12143	n:1300000
OR2S2   1300000 perm   881 sec   (1476 perm/sec)   p_kst 9.340769e-03   p_cons 1.371231e-02   p_joint 3.184615e-04

Joint ci ratio: 1.921632e-01	ci left: 2.870484e-04	ci right 3.487838e-04	k: 415	n:1310000
Cons ci ratio: 2.905090e-02	ci left: 1.350922e-02	ci right 1.390821e-02	k: 17957	n:1310000
KS ci ratio: 3.530537e-02	ci left: 9.158277e-03	ci right 9.488173e-03	k: 12212	n:1310000
OR2S2   1310000 perm   893 sec   (1467 perm/sec)   p_kst 9.322137e-03   p_cons 1.370763e-02   p_joint 3.167939e-04

Joint ci ratio: 1.917030e-01	ci left: 2.863161e-04	ci right 3.477294e-04	k: 417	n:1320000
Cons ci ratio: 2.893423e-02	ci left: 1.351593e-02	ci right 1.391348e-02	k: 18102	n:1320000
KS ci ratio: 3.515298e-02	ci left: 9.168492e-03	ci right 9.497302e-03	k: 12318	n:1320000
OR2S2   1320000 perm   905 sec   (1459 perm/sec)   p_kst 9.331818e-03   p_cons 1.371364e-02   p_joint 3.159091e-04

Joint ci ratio: 1.907923e-01	ci left: 2.870269e-04	ci right 3.482662e-04	k: 421	n:1330000
Cons ci ratio: 2.882216e-02	ci left: 1.351955e-02	ci right 1.391565e-02	k: 18243	n:1330000
KS ci ratio: 3.501961e-02	ci left: 9.169613e-03	ci right 9.497191e-03	k: 12412	n:1330000
OR2S2   1330000 perm   916 sec   (1451 perm/sec)   p_kst 9.332331e-03   p_cons 1.371654e-02   p_joint 3.165414e-04

Joint ci ratio: 1.905668e-01	ci left: 2.855955e-04	ci right 3.464491e-04	k: 422	n:1340000
Cons ci ratio: 2.870506e-02	ci left: 1.352906e-02	ci right 1.392380e-02	k: 18392	n:1340000
KS ci ratio: 3.489057e-02	ci left: 9.169240e-03	ci right 9.495573e-03	k: 12504	n:1340000
OR2S2   1340000 perm   928 sec   (1443 perm/sec)   p_kst 9.331343e-03   p_cons 1.372537e-02   p_joint 3.149254e-04

Joint ci ratio: 1.905670e-01	ci left: 2.834800e-04	ci right 3.438829e-04	k: 422	n:1350000
Cons ci ratio: 2.861127e-02	ci left: 1.351783e-02	ci right 1.391093e-02	k: 18513	n:1350000
KS ci ratio: 3.476852e-02	ci left: 9.165937e-03	ci right 9.490988e-03	k: 12592	n:1350000
OR2S2   1350000 perm   941 sec   (1435 perm/sec)   p_kst 9.327407e-03   p_cons 1.371333e-02   p_joint 3.125926e-04

Joint ci ratio: 1.896722e-01	ci left: 2.841968e-04	ci right 3.444353e-04	k: 426	n:1360000
Cons ci ratio: 2.850445e-02	ci left: 1.351991e-02	ci right 1.391158e-02	k: 18652	n:1360000
KS ci ratio: 3.464360e-02	ci left: 9.164871e-03	ci right 9.488694e-03	k: 12683	n:1360000
OR2S2   1360000 perm   953 sec   (1427 perm/sec)   p_kst 9.325735e-03   p_cons 1.371471e-02   p_joint 3.132353e-04

Joint ci ratio: 1.896725e-01	ci left: 2.821223e-04	ci right 3.419212e-04	k: 426	n:1370000
Cons ci ratio: 2.839805e-02	ci left: 1.352269e-02	ci right 1.391295e-02	k: 18792	n:1370000
KS ci ratio: 3.452412e-02	ci left: 9.161652e-03	ci right 9.484223e-03	k: 12771	n:1370000
OR2S2   1370000 perm   965 sec   (1419 perm/sec)   p_kst 9.321898e-03   p_cons 1.371679e-02   p_joint 3.109489e-04

Joint ci ratio: 1.890097e-01	ci left: 2.821488e-04	ci right 3.417204e-04	k: 429	n:1380000
Cons ci ratio: 2.829965e-02	ci left: 1.351895e-02	ci right 1.390773e-02	k: 18923	n:1380000
KS ci ratio: 3.438292e-02	ci left: 9.170696e-03	ci right 9.492238e-03	k: 12876	n:1380000
OR2S2   1380000 perm   978 sec   (1411 perm/sec)   p_kst 9.330435e-03   p_cons 1.371232e-02   p_joint 3.108696e-04

Joint ci ratio: 1.883538e-01	ci left: 2.821753e-04	ci right 3.415220e-04	k: 432	n:1390000
Cons ci ratio: 2.820377e-02	ci left: 1.351384e-02	ci right 1.390114e-02	k: 19052	n:1390000
KS ci ratio: 3.427812e-02	ci left: 9.161065e-03	ci right 9.481272e-03	k: 12955	n:1390000
OR2S2   1390000 perm   990 sec   (1404 perm/sec)   p_kst 9.320144e-03   p_cons 1.370647e-02   p_joint 3.107914e-04

Joint ci ratio: 1.879203e-01	ci left: 2.815210e-04	ci right 3.405784e-04	k: 434	n:1400000
Cons ci ratio: 2.809179e-02	ci left: 1.352512e-02	ci right 1.391118e-02	k: 19204	n:1400000
KS ci ratio: 3.412672e-02	ci left: 9.177071e-03	ci right 9.496393e-03	k: 13070	n:1400000
OR2S2   1400000 perm   1002 sec   (1397 perm/sec)   p_kst 9.335714e-03   p_cons 1.371714e-02   p_joint 3.100000e-04

Joint ci ratio: 1.874899e-01	ci left: 2.808762e-04	ci right 3.396480e-04	k: 436	n:1410000
Cons ci ratio: 2.798406e-02	ci left: 1.353343e-02	ci right 1.391822e-02	k: 19352	n:1410000
KS ci ratio: 3.401640e-02	ci left: 9.171755e-03	ci right 9.489840e-03	k: 13155	n:1410000
OR2S2   1410000 perm   1015 sec   (1389 perm/sec)   p_kst 9.329787e-03   p_cons 1.372482e-02   p_joint 3.092199e-04

Joint ci ratio: 1.868496e-01	ci left: 2.809119e-04	ci right 3.394676e-04	k: 439	n:1420000
Cons ci ratio: 2.789061e-02	ci left: 1.352903e-02	ci right 1.391239e-02	k: 19482	n:1420000
KS ci ratio: 3.386457e-02	ci left: 9.189560e-03	ci right 9.506812e-03	k: 13273	n:1420000
OR2S2   1420000 perm   1028 sec   (1382 perm/sec)   p_kst 9.347183e-03   p_cons 1.371972e-02   p_joint 3.091549e-04

Joint ci ratio: 1.868498e-01	ci left: 2.789474e-04	ci right 3.370938e-04	k: 439	n:1430000
Cons ci ratio: 2.779019e-02	ci left: 1.353234e-02	ci right 1.391439e-02	k: 19623	n:1430000
KS ci ratio: 3.376314e-02	ci left: 9.180768e-03	ci right 9.496749e-03	k: 13353	n:1430000
OR2S2   1430000 perm   1040 sec   (1375 perm/sec)   p_kst 9.337762e-03   p_cons 1.372238e-02   p_joint 3.069930e-04

Joint ci ratio: 1.853808e-01	ci left: 2.816450e-04	ci right 3.398401e-04	k: 446	n:1440000
Cons ci ratio: 2.769157e-02	ci left: 1.353491e-02	ci right 1.391566e-02	k: 19763	n:1440000
KS ci ratio: 3.363862e-02	ci left: 9.185183e-03	ci right 9.500128e-03	k: 13452	n:1440000
OR2S2   1440000 perm   1053 sec   (1367 perm/sec)   p_kst 9.341667e-03   p_cons 1.372431e-02   p_joint 3.097222e-04

Joint ci ratio: 1.849675e-01	ci left: 2.810180e-04	ci right 3.389396e-04	k: 448	n:1450000
Cons ci ratio: 2.759609e-02	ci left: 1.353540e-02	ci right 1.391482e-02	k: 19900	n:1450000
KS ci ratio: 3.352045e-02	ci left: 9.186805e-03	ci right 9.500677e-03	k: 13547	n:1450000
OR2S2   1450000 perm   1066 sec   (1360 perm/sec)   p_kst 9.342759e-03   p_cons 1.372414e-02   p_joint 3.089655e-04

Joint ci ratio: 1.841490e-01	ci left: 2.817064e-04	ci right 3.394842e-04	k: 452	n:1460000
Cons ci ratio: 2.751064e-02	ci left: 1.352703e-02	ci right 1.390504e-02	k: 20024	n:1460000
KS ci ratio: 3.339611e-02	ci left: 9.192481e-03	ci right 9.505360e-03	k: 13648	n:1460000
OR2S2   1460000 perm   1079 sec   (1353 perm/sec)   p_kst 9.347945e-03   p_cons 1.371507e-02   p_joint 3.095890e-04

Joint ci ratio: 1.835423e-01	ci left: 2.817369e-04	ci right 3.393095e-04	k: 455	n:1470000
Cons ci ratio: 2.742184e-02	ci left: 1.352284e-02	ci right 1.389949e-02	k: 20154	n:1470000
KS ci ratio: 3.331475e-02	ci left: 9.175144e-03	ci right 9.486658e-03	k: 13715	n:1470000
OR2S2   1470000 perm   1092 sec   (1346 perm/sec)   p_kst 9.329932e-03   p_cons 1.371020e-02   p_joint 3.095238e-04

Joint ci ratio: 1.833415e-01	ci left: 2.804779e-04	ci right 3.377235e-04	k: 456	n:1480000
Cons ci ratio: 2.733185e-02	ci left: 1.352072e-02	ci right 1.389605e-02	k: 20287	n:1480000
KS ci ratio: 3.320481e-02	ci left: 9.174125e-03	ci right 9.484557e-03	k: 13806	n:1480000
OR2S2   1480000 perm   1106 sec   (1339 perm/sec)   p_kst 9.328378e-03   p_cons 1.370743e-02   p_joint 3.081081e-04

Joint ci ratio: 1.829417e-01	ci left: 2.798762e-04	ci right 3.368607e-04	k: 458	n:1490000
Cons ci ratio: 2.723327e-02	ci left: 1.352796e-02	ci right 1.390212e-02	k: 20434	n:1490000
KS ci ratio: 3.309354e-02	ci left: 9.174452e-03	ci right 9.483835e-03	k: 13899	n:1490000
OR2S2   1490000 perm   1119 sec   (1332 perm/sec)   p_kst 9.328188e-03   p_cons 1.371409e-02   p_joint 3.073826e-04

Joint ci ratio: 1.821497e-01	ci left: 2.805552e-04	ci right 3.374033e-04	k: 462	n:1500000
Cons ci ratio: 2.713442e-02	ci left: 1.353644e-02	ci right 1.390945e-02	k: 20583	n:1500000
KS ci ratio: 3.298577e-02	ci left: 9.173455e-03	ci right 9.481778e-03	k: 13990	n:1500000
OR2S2   1500000 perm   1132 sec   (1325 perm/sec)   p_kst 9.326667e-03   p_cons 1.372200e-02   p_joint 3.080000e-04

Joint ci ratio: 1.815624e-01	ci left: 2.805935e-04	ci right 3.372460e-04	k: 465	n:1510000
Cons ci ratio: 2.705384e-02	ci left: 1.352769e-02	ci right 1.389934e-02	k: 20706	n:1510000
KS ci ratio: 3.287787e-02	ci left: 9.173129e-03	ci right 9.480413e-03	k: 14082	n:1510000
OR2S2   1510000 perm   1146 sec   (1318 perm/sec)   p_kst 9.325828e-03   p_cons 1.371258e-02   p_joint 3.079470e-04

Joint ci ratio: 1.813680e-01	ci left: 2.793755e-04	ci right 3.357150e-04	k: 466	n:1520000
Cons ci ratio: 2.696938e-02	ci left: 1.352364e-02	ci right 1.389400e-02	k: 20836	n:1520000
KS ci ratio: 3.279554e-02	ci left: 9.159105e-03	ci right 9.465137e-03	k: 14153	n:1520000
OR2S2   1520000 perm   1159 sec   (1311 perm/sec)   p_kst 9.311184e-03   p_cons 1.370789e-02   p_joint 3.065789e-04

Joint ci ratio: 1.809810e-01	ci left: 2.787974e-04	ci right 3.348872e-04	k: 468	n:1530000
Cons ci ratio: 2.688181e-02	ci left: 1.352355e-02	ci right 1.389268e-02	k: 20972	n:1530000
KS ci ratio: 3.268949e-02	ci left: 9.158880e-03	ci right 9.463896e-03	k: 14245	n:1530000
OR2S2   1530000 perm   1173 sec   (1305 perm/sec)   p_kst 9.310458e-03   p_cons 1.370719e-02   p_joint 3.058824e-04

Joint ci ratio: 1.804049e-01	ci left: 2.788470e-04	ci right 3.347487e-04	k: 471	n:1540000
Cons ci ratio: 2.677387e-02	ci left: 1.354474e-02	ci right 1.391294e-02	k: 21141	n:1540000
KS ci ratio: 3.258445e-02	ci left: 9.158660e-03	ci right 9.462670e-03	k: 14337	n:1540000
OR2S2   1540000 perm   1187 sec   (1298 perm/sec)   p_kst 9.309740e-03   p_cons 1.372792e-02   p_joint 3.058442e-04

Joint ci ratio: 1.796453e-01	ci left: 2.795124e-04	ci right 3.352858e-04	k: 475	n:1550000
Cons ci ratio: 2.668818e-02	ci left: 1.354451e-02	ci right 1.391151e-02	k: 21277	n:1550000
KS ci ratio: 3.247929e-02	ci left: 9.159084e-03	ci right 9.462109e-03	k: 14430	n:1550000
OR2S2   1550000 perm   1200 sec   (1291 perm/sec)   p_kst 9.309677e-03   p_cons 1.372710e-02   p_joint 3.064516e-04

Joint ci ratio: 1.790818e-01	ci left: 2.795574e-04	ci right 3.351459e-04	k: 478	n:1560000
Cons ci ratio: 2.660520e-02	ci left: 1.354237e-02	ci right 1.390816e-02	k: 21410	n:1560000
KS ci ratio: 3.236727e-02	ci left: 9.163955e-03	ci right 9.466076e-03	k: 14530	n:1560000
OR2S2   1560000 perm   1215 sec   (1284 perm/sec)   p_kst 9.314103e-03   p_cons 1.372436e-02   p_joint 3.064103e-04

Joint ci ratio: 1.783387e-01	ci left: 2.802106e-04	ci right 3.356728e-04	k: 482	n:1570000
Cons ci ratio: 2.652860e-02	ci left: 1.353457e-02	ci right 1.389907e-02	k: 21534	n:1570000
KS ci ratio: 3.225751e-02	ci left: 9.168134e-03	ci right 9.469349e-03	k: 14629	n:1570000
OR2S2   1570000 perm   1230 sec   (1277 perm/sec)   p_kst 9.317834e-03   p_cons 1.371592e-02   p_joint 3.070064e-04

Joint ci ratio: 1.781545e-01	ci left: 2.790417e-04	ci right 3.342094e-04	k: 483	n:1580000
Cons ci ratio: 2.644771e-02	ci left: 1.353190e-02	ci right 1.389520e-02	k: 21666	n:1580000
KS ci ratio: 3.214555e-02	ci left: 9.174146e-03	ci right 9.474493e-03	k: 14731	n:1580000
OR2S2   1580000 perm   1245 sec   (1269 perm/sec)   p_kst 9.323418e-03   p_cons 1.371266e-02   p_joint 3.056962e-04

Joint ci ratio: 1.781546e-01	ci left: 2.772867e-04	ci right 3.321075e-04	k: 483	n:1590000
Cons ci ratio: 2.638106e-02	ci left: 1.351552e-02	ci right 1.387745e-02	k: 21776	n:1590000
KS ci ratio: 3.205112e-02	ci left: 9.170724e-03	ci right 9.470061e-03	k: 14818	n:1590000
OR2S2   1590000 perm   1259 sec   (1263 perm/sec)   p_kst 9.319497e-03   p_cons 1.369560e-02   p_joint 3.037736e-04

Joint ci ratio: 1.768799e-01	ci left: 2.797343e-04	ci right 3.346010e-04	k: 490	n:1600000
Cons ci ratio: 2.629056e-02	ci left: 1.352418e-02	ci right 1.388509e-02	k: 21926	n:1600000
KS ci ratio: 3.194561e-02	ci left: 9.174167e-03	ci right 9.472613e-03	k: 14916	n:1600000
OR2S2   1600000 perm   1273 sec   (1256 perm/sec)   p_kst 9.322500e-03   p_cons 1.370375e-02   p_joint 3.062500e-04

Joint ci ratio: 1.763420e-01	ci left: 2.797778e-04	ci right 3.344684e-04	k: 493	n:1610000
Cons ci ratio: 2.620580e-02	ci left: 1.352780e-02	ci right 1.388762e-02	k: 22068	n:1610000
KS ci ratio: 3.184649e-02	ci left: 9.174488e-03	ci right 9.472001e-03	k: 15009	n:1610000
OR2S2   1610000 perm   1288 sec   (1250 perm/sec)   p_kst 9.322360e-03   p_cons 1.370683e-02   p_joint 3.062112e-04

Joint ci ratio: 1.754562e-01	ci left: 2.810014e-04	ci right 3.356259e-04	k: 498	n:1620000
Cons ci ratio: 2.612186e-02	ci left: 1.353137e-02	ci right 1.389012e-02	k: 22210	n:1620000
KS ci ratio: 3.174723e-02	ci left: 9.175419e-03	ci right 9.472018e-03	k: 15103	n:1620000
OR2S2   1620000 perm   1302 sec   (1244 perm/sec)   p_kst 9.322840e-03   p_cons 1.370988e-02   p_joint 3.074074e-04

Joint ci ratio: 1.749312e-01	ci left: 2.810372e-04	ci right 3.354879e-04	k: 501	n:1630000
Cons ci ratio: 2.604049e-02	ci left: 1.353308e-02	ci right 1.389074e-02	k: 22349	n:1630000
KS ci ratio: 3.165520e-02	ci left: 9.172688e-03	ci right 9.468323e-03	k: 15191	n:1630000
OR2S2   1630000 perm   1317 sec   (1238 perm/sec)   p_kst 9.319632e-03   p_cons 1.371104e-02   p_joint 3.073620e-04

Joint ci ratio: 1.740663e-01	ci left: 2.822392e-04	ci right 3.366241e-04	k: 506	n:1640000
Cons ci ratio: 2.594993e-02	ci left: 1.354506e-02	ci right 1.390178e-02	k: 22505	n:1640000
KS ci ratio: 3.156918e-02	ci left: 9.166966e-03	ci right 9.461600e-03	k: 15274	n:1640000
OR2S2   1640000 perm   1331 sec   (1232 perm/sec)   p_kst 9.313415e-03   p_cons 1.372256e-02   p_joint 3.085366e-04

Joint ci ratio: 1.738950e-01	ci left: 2.811083e-04	ci right 3.352164e-04	k: 507	n:1650000
Cons ci ratio: 2.587942e-02	ci left: 1.353704e-02	ci right 1.389255e-02	k: 22628	n:1650000
KS ci ratio: 3.146938e-02	ci left: 9.169733e-03	ci right 9.463508e-03	k: 15371	n:1650000
OR2S2   1650000 perm   1346 sec   (1226 perm/sec)   p_kst 9.315758e-03   p_cons 1.371394e-02   p_joint 3.072727e-04

Joint ci ratio: 1.732144e-01	ci left: 2.817199e-04	ci right 3.357112e-04	k: 511	n:1660000
Cons ci ratio: 2.579742e-02	ci left: 1.354167e-02	ci right 1.389617e-02	k: 22772	n:1660000
KS ci ratio: 3.137974e-02	ci left: 9.167089e-03	ci right 9.459927e-03	k: 15459	n:1660000
OR2S2   1660000 perm   1361 sec   (1220 perm/sec)   p_kst 9.312651e-03   p_cons 1.371807e-02   p_joint 3.078313e-04

Joint ci ratio: 1.728771e-01	ci left: 2.811787e-04	ci right 3.349504e-04	k: 513	n:1670000
Cons ci ratio: 2.571903e-02	ci left: 1.354328e-02	ci right 1.389673e-02	k: 22911	n:1670000
KS ci ratio: 3.128985e-02	ci left: 9.165072e-03	ci right 9.456992e-03	k: 15548	n:1670000
OR2S2   1670000 perm   1375 sec   (1214 perm/sec)   p_kst 9.310180e-03   p_cons 1.371916e-02   p_joint 3.071856e-04

Joint ci ratio: 1.723748e-01	ci left: 2.812135e-04	ci right 3.348194e-04	k: 516	n:1680000
Cons ci ratio: 2.563346e-02	ci left: 1.355316e-02	ci right 1.390567e-02	k: 23064	n:1680000
KS ci ratio: 3.118361e-02	ci left: 9.173122e-03	ci right 9.464288e-03	k: 15654	n:1680000
OR2S2   1680000 perm   1390 sec   (1209 perm/sec)   p_kst 9.317857e-03   p_cons 1.372857e-02   p_joint 3.071429e-04

Joint ci ratio: 1.720424e-01	ci left: 2.806820e-04	ci right 3.340726e-04	k: 518	n:1690000
Cons ci ratio: 2.555098e-02	ci left: 1.356056e-02	ci right 1.391211e-02	k: 23213	n:1690000
KS ci ratio: 3.110137e-02	ci left: 9.167572e-03	ci right 9.457782e-03	k: 15737	n:1690000
OR2S2   1690000 perm   1405 sec   (1203 perm/sec)   p_kst 9.311834e-03   p_cons 1.373550e-02   p_joint 3.065089e-04

Joint ci ratio: 1.712196e-01	ci left: 2.818458e-04	ci right 3.351749e-04	k: 523	n:1700000
Cons ci ratio: 2.547260e-02	ci left: 1.356438e-02	ci right 1.391493e-02	k: 23356	n:1700000
KS ci ratio: 3.100791e-02	ci left: 9.169094e-03	ci right 9.458464e-03	k: 15832	n:1700000
OR2S2   1700000 perm   1420 sec   (1198 perm/sec)   p_kst 9.312941e-03   p_cons 1.373882e-02   p_joint 3.076471e-04

Joint ci ratio: 1.705697e-01	ci left: 2.824367e-04	ci right 3.356539e-04	k: 527	n:1710000
Cons ci ratio: 2.538782e-02	ci left: 1.357570e-02	ci right 1.392536e-02	k: 23512	n:1710000
KS ci ratio: 3.090940e-02	ci left: 9.174081e-03	ci right 9.462672e-03	k: 15933	n:1710000
OR2S2   1710000 perm   1435 sec   (1192 perm/sec)   p_kst 9.317544e-03   p_cons 1.374971e-02   p_joint 3.081871e-04

Joint ci ratio: 1.699272e-01	ci left: 2.830211e-04	ci right 3.361270e-04	k: 531	n:1720000
Cons ci ratio: 2.531418e-02	ci left: 1.357592e-02	ci right 1.392456e-02	k: 23649	n:1720000
KS ci ratio: 3.081378e-02	ci left: 9.177858e-03	ci right 9.465659e-03	k: 16032	n:1720000
OR2S2   1720000 perm   1449 sec   (1187 perm/sec)   p_kst 9.320930e-03   p_cons 1.374942e-02   p_joint 3.087209e-04

Joint ci ratio: 1.688200e-01	ci left: 2.852599e-04	ci right 3.384016e-04	k: 538	n:1730000
Cons ci ratio: 2.524441e-02	ci left: 1.357269e-02	ci right 1.392027e-02	k: 23780	n:1730000
KS ci ratio: 3.073827e-02	ci left: 9.170119e-03	ci right 9.456960e-03	k: 16111	n:1730000
OR2S2   1730000 perm   1465 sec   (1181 perm/sec)   p_kst 9.312717e-03   p_cons 1.374566e-02   p_joint 3.109827e-04

Joint ci ratio: 1.683521e-01	ci left: 2.852719e-04	ci right 3.382536e-04	k: 541	n:1740000
Cons ci ratio: 2.516828e-02	ci left: 1.357692e-02	ci right 1.392355e-02	k: 23924	n:1740000
KS ci ratio: 3.065949e-02	ci left: 9.164752e-03	ci right 9.450678e-03	k: 16194	n:1740000
OR2S2   1740000 perm   1480 sec   (1176 perm/sec)   p_kst 9.306897e-03   p_cons 1.374943e-02   p_joint 3.109195e-04

Joint ci ratio: 1.678882e-01	ci left: 2.852839e-04	ci right 3.381071e-04	k: 544	n:1750000
Cons ci ratio: 2.509600e-02	ci left: 1.357770e-02	ci right 1.392334e-02	k: 24062	n:1750000
KS ci ratio: 3.057089e-02	ci left: 9.165685e-03	ci right 9.450799e-03	k: 16288	n:1750000
OR2S2   1750000 perm   1494 sec   (1171 perm/sec)   p_kst 9.307429e-03   p_cons 1.374971e-02   p_joint 3.108571e-04

Joint ci ratio: 1.672754e-01	ci left: 2.858404e-04	ci right 3.385540e-04	k: 548	n:1760000
Cons ci ratio: 2.502854e-02	ci left: 1.357396e-02	ci right 1.391856e-02	k: 24192	n:1760000
KS ci ratio: 3.047273e-02	ci left: 9.172812e-03	ci right 9.457215e-03	k: 16393	n:1760000
OR2S2   1760000 perm   1509 sec   (1166 perm/sec)   p_kst 9.314205e-03   p_cons 1.374545e-02   p_joint 3.113636e-04

Joint ci ratio: 1.669716e-01	ci left: 2.853081e-04	ci right 3.378184e-04	k: 550	n:1770000
Cons ci ratio: 2.496162e-02	ci left: 1.357025e-02	ci right 1.391383e-02	k: 24322	n:1770000
KS ci ratio: 3.039038e-02	ci left: 9.170888e-03	ci right 9.454450e-03	k: 16482	n:1770000
OR2S2   1770000 perm   1525 sec   (1161 perm/sec)   p_kst 9.311864e-03   p_cons 1.374124e-02   p_joint 3.107345e-04

Joint ci ratio: 1.665189e-01	ci left: 2.853203e-04	ci right 3.376762e-04	k: 553	n:1780000
Cons ci ratio: 2.489110e-02	ci left: 1.357106e-02	ci right 1.391367e-02	k: 24460	n:1780000
KS ci ratio: 3.030132e-02	ci left: 9.173447e-03	ci right 9.456243e-03	k: 16579	n:1780000
OR2S2   1780000 perm   1540 sec   (1156 perm/sec)   p_kst 9.314045e-03   p_cons 1.374157e-02   p_joint 3.106742e-04

Joint ci ratio: 1.657724e-01	ci left: 2.864035e-04	ci right 3.386991e-04	k: 558	n:1790000
Cons ci ratio: 2.481964e-02	ci left: 1.357353e-02	ci right 1.391520e-02	k: 24601	n:1790000
KS ci ratio: 3.021670e-02	ci left: 9.173761e-03	ci right 9.455763e-03	k: 16672	n:1790000
OR2S2   1790000 perm   1555 sec   (1151 perm/sec)   p_kst 9.313966e-03   p_cons 1.374358e-02   p_joint 3.117318e-04

Joint ci ratio: 1.648897e-01	ci left: 2.880078e-04	ci right 3.402885e-04	k: 564	n:1800000
Cons ci ratio: 2.475083e-02	ci left: 1.357376e-02	ci right 1.391448e-02	k: 24738	n:1800000
KS ci ratio: 3.013187e-02	ci left: 9.174624e-03	ci right 9.455847e-03	k: 16766	n:1800000
OR2S2   1800000 perm   1570 sec   (1146 perm/sec)   p_kst 9.314444e-03   p_cons 1.374333e-02   p_joint 3.133333e-04

Joint ci ratio: 1.643091e-01	ci left: 2.885356e-04	ci right 3.407094e-04	k: 568	n:1810000
Cons ci ratio: 2.467152e-02	ci left: 1.358607e-02	ci right 1.392599e-02	k: 24897	n:1810000
KS ci ratio: 3.004326e-02	ci left: 9.178220e-03	ci right 9.458712e-03	k: 16865	n:1810000
OR2S2   1810000 perm   1585 sec   (1142 perm/sec)   p_kst 9.317680e-03   p_cons 1.375525e-02   p_joint 3.138122e-04

Joint ci ratio: 1.630246e-01	ci left: 2.916928e-04	ci right 3.439847e-04	k: 577	n:1820000
Cons ci ratio: 2.460343e-02	ci left: 1.358678e-02	ci right 1.392576e-02	k: 25035	n:1820000
KS ci ratio: 2.994829e-02	ci left: 9.186141e-03	ci right 9.465973e-03	k: 16972	n:1820000
OR2S2   1820000 perm   1601 sec   (1137 perm/sec)   p_kst 9.325275e-03   p_cons 1.375549e-02   p_joint 3.170330e-04

Joint ci ratio: 1.627433e-01	ci left: 2.911472e-04	ci right 3.432424e-04	k: 579	n:1830000
Cons ci ratio: 2.454035e-02	ci left: 1.358259e-02	ci right 1.392059e-02	k: 25164	n:1830000
KS ci ratio: 2.985422e-02	ci left: 9.193977e-03	ci right 9.473153e-03	k: 17079	n:1830000
OR2S2   1830000 perm   1617 sec   (1132 perm/sec)   p_kst 9.332787e-03   p_cons 1.375082e-02   p_joint 3.163934e-04

Joint ci ratio: 1.613579e-01	ci left: 2.947793e-04	ci right 3.470319e-04	k: 589	n:1840000
Cons ci ratio: 2.446892e-02	ci left: 1.358817e-02	ci right 1.392531e-02	k: 25311	n:1840000
KS ci ratio: 2.977941e-02	ci left: 9.190401e-03	ci right 9.468756e-03	k: 17165	n:1840000
OR2S2   1840000 perm   1632 sec   (1128 perm/sec)   p_kst 9.328804e-03   p_cons 1.375598e-02   p_joint 3.201087e-04

Joint ci ratio: 1.610852e-01	ci left: 2.942233e-04	ci right 3.462807e-04	k: 591	n:1850000
Cons ci ratio: 2.440881e-02	ci left: 1.358188e-02	ci right 1.391802e-02	k: 25436	n:1850000
KS ci ratio: 2.969820e-02	ci left: 9.191156e-03	ci right 9.468762e-03	k: 17259	n:1850000
OR2S2   1850000 perm   1648 sec   (1123 perm/sec)   p_kst 9.329189e-03   p_cons 1.374919e-02   p_joint 3.194595e-04

Joint ci ratio: 1.605437e-01	ci left: 2.947055e-04	ci right 3.466560e-04	k: 595	n:1860000
Cons ci ratio: 2.434672e-02	ci left: 1.357832e-02	ci right 1.391351e-02	k: 25566	n:1860000
KS ci ratio: 2.960474e-02	ci left: 9.199909e-03	ci right 9.476891e-03	k: 17368	n:1860000
OR2S2   1860000 perm   1663 sec   (1118 perm/sec)   p_kst 9.337634e-03   p_cons 1.374516e-02   p_joint 3.198925e-04

Joint ci ratio: 1.602750e-01	ci left: 2.941561e-04	ci right 3.459147e-04	k: 597	n:1870000
Cons ci ratio: 2.428128e-02	ci left: 1.357906e-02	ci right 1.391336e-02	k: 25704	n:1870000
KS ci ratio: 2.951898e-02	ci left: 9.204324e-03	ci right 9.480622e-03	k: 17469	n:1870000
OR2S2   1870000 perm   1680 sec   (1113 perm/sec)   p_kst 9.341711e-03   p_cons 1.374545e-02   p_joint 3.192513e-04

Joint ci ratio: 1.598745e-01	ci left: 2.941233e-04	ci right 3.457343e-04	k: 600	n:1880000
Cons ci ratio: 2.421731e-02	ci left: 1.357873e-02	ci right 1.391213e-02	k: 25840	n:1880000
KS ci ratio: 2.944157e-02	ci left: 9.203940e-03	ci right 9.479490e-03	k: 17561	n:1880000
OR2S2   1880000 perm   1696 sec   (1109 perm/sec)   p_kst 9.340957e-03   p_cons 1.374468e-02   p_joint 3.191489e-04

Joint ci ratio: 1.594770e-01	ci left: 2.940909e-04	ci right 3.455557e-04	k: 603	n:1890000
Cons ci ratio: 2.415950e-02	ci left: 1.357210e-02	ci right 1.390452e-02	k: 25964	n:1890000
KS ci ratio: 2.935470e-02	ci left: 9.209864e-03	ci right 9.484764e-03	k: 17665	n:1890000
OR2S2   1890000 perm   1712 sec   (1104 perm/sec)   p_kst 9.346561e-03   p_cons 1.373757e-02   p_joint 3.190476e-04

Joint ci ratio: 1.589515e-01	ci left: 2.945645e-04	ci right 3.459260e-04	k: 607	n:1900000
Cons ci ratio: 2.408900e-02	ci left: 1.358019e-02	ci right 1.391182e-02	k: 26116	n:1900000
KS ci ratio: 2.927524e-02	ci left: 9.211547e-03	ci right 9.485741e-03	k: 17761	n:1900000
OR2S2   1900000 perm   1728 sec   (1100 perm/sec)   p_kst 9.347895e-03   p_cons 1.374526e-02   p_joint 3.194737e-04

Joint ci ratio: 1.584312e-01	ci left: 2.950333e-04	ci right 3.462922e-04	k: 611	n:1910000
Cons ci ratio: 2.402282e-02	ci left: 1.358403e-02	ci right 1.391483e-02	k: 26260	n:1910000
KS ci ratio: 2.919395e-02	ci left: 9.214773e-03	ci right 9.488288e-03	k: 17860	n:1910000
OR2S2   1910000 perm   1745 sec   (1095 perm/sec)   p_kst 9.350785e-03   p_cons 1.374869e-02   p_joint 3.198953e-04

Joint ci ratio: 1.576601e-01	ci left: 2.964981e-04	ci right 3.477371e-04	k: 617	n:1920000
Cons ci ratio: 2.396363e-02	ci left: 1.358058e-02	ci right 1.391048e-02	k: 26390	n:1920000
KS ci ratio: 2.911579e-02	ci left: 9.216415e-03	ci right 9.489234e-03	k: 17956	n:1920000
OR2S2   1920000 perm   1761 sec   (1090 perm/sec)   p_kst 9.352083e-03   p_cons 1.374479e-02   p_joint 3.213542e-04

Joint ci ratio: 1.574057e-01	ci left: 2.959573e-04	ci right 3.470125e-04	k: 619	n:1930000
Cons ci ratio: 2.390350e-02	ci left: 1.357871e-02	ci right 1.390772e-02	k: 26523	n:1930000
KS ci ratio: 2.903339e-02	ci left: 9.221128e-03	ci right 9.493301e-03	k: 18058	n:1930000
OR2S2   1930000 perm   1778 sec   (1086 perm/sec)   p_kst 9.356477e-03   p_cons 1.374249e-02   p_joint 3.207254e-04

Joint ci ratio: 1.569003e-01	ci left: 2.964125e-04	ci right 3.473666e-04	k: 623	n:1940000
Cons ci ratio: 2.383023e-02	ci left: 1.359224e-02	ci right 1.392056e-02	k: 26686	n:1940000
KS ci ratio: 2.895973e-02	ci left: 9.220675e-03	ci right 9.492133e-03	k: 18150	n:1940000
OR2S2   1940000 perm   1795 sec   (1081 perm/sec)   p_kst 9.355670e-03   p_cons 1.375567e-02   p_joint 3.211340e-04

Joint ci ratio: 1.565245e-01	ci left: 2.963706e-04	ci right 3.471840e-04	k: 626	n:1950000
Cons ci ratio: 2.376930e-02	ci left: 1.359237e-02	ci right 1.391984e-02	k: 26823	n:1950000
KS ci ratio: 2.887464e-02	ci left: 9.227865e-03	ci right 9.498723e-03	k: 18257	n:1950000
OR2S2   1950000 perm   1812 sec   (1076 perm/sec)   p_kst 9.362564e-03   p_cons 1.375538e-02   p_joint 3.210256e-04

Joint ci ratio: 1.560276e-01	ci left: 2.968195e-04	ci right 3.475332e-04	k: 630	n:1960000
Cons ci ratio: 2.370616e-02	ci left: 1.359555e-02	ci right 1.392222e-02	k: 26966	n:1960000
KS ci ratio: 2.881566e-02	ci left: 9.218773e-03	ci right 9.488802e-03	k: 18332	n:1960000
OR2S2   1960000 perm   1828 sec   (1072 perm/sec)   p_kst 9.353061e-03   p_cons 1.375816e-02   p_joint 3.214286e-04

Joint ci ratio: 1.556580e-01	ci left: 2.967762e-04	ci right 3.473512e-04	k: 633	n:1970000
Cons ci ratio: 2.364573e-02	ci left: 1.359617e-02	ci right 1.392201e-02	k: 27104	n:1970000
KS ci ratio: 2.873655e-02	ci left: 9.222877e-03	ci right 9.492273e-03	k: 18433	n:1970000
OR2S2   1970000 perm   1845 sec   (1068 perm/sec)   p_kst 9.356853e-03   p_cons 1.375838e-02   p_joint 3.213198e-04

Joint ci ratio: 1.551692e-01	ci left: 2.972190e-04	ci right 3.476956e-04	k: 637	n:1980000
Cons ci ratio: 2.358796e-02	ci left: 1.359428e-02	ci right 1.391926e-02	k: 27237	n:1980000
KS ci ratio: 2.867215e-02	ci left: 9.217915e-03	ci right 9.486553e-03	k: 18516	n:1980000
OR2S2   1980000 perm   1862 sec   (1063 perm/sec)   p_kst 9.351515e-03   p_cons 1.375606e-02   p_joint 3.217172e-04

Joint ci ratio: 1.546851e-01	ci left: 2.976576e-04	ci right 3.480363e-04	k: 641	n:1990000
Cons ci ratio: 2.352277e-02	ci left: 1.360140e-02	ci right 1.392564e-02	k: 27388	n:1990000
KS ci ratio: 2.861751e-02	ci left: 9.207016e-03	ci right 9.474817e-03	k: 18587	n:1990000
OR2S2   1990000 perm   1880 sec   (1059 perm/sec)   p_kst 9.340201e-03   p_cons 1.376281e-02   p_joint 3.221106e-04

Joint ci ratio: 1.543249e-01	ci left: 2.976113e-04	ci right 3.478541e-04	k: 644	n:2000000
Cons ci ratio: 2.347065e-02	ci left: 1.359403e-02	ci right 1.391738e-02	k: 27510	n:2000000
KS ci ratio: 2.854619e-02	ci left: 9.207149e-03	ci right 9.474275e-03	k: 18680	n:2000000
OR2S2   2000000 perm   1897 sec   (1054 perm/sec)   p_kst 9.340000e-03   p_cons 1.375500e-02   p_joint 3.220000e-04

Joint ci ratio: 1.536120e-01	ci left: 2.990007e-04	ci right 3.492235e-04	k: 650	n:2010000
Cons ci ratio: 2.342231e-02	ci left: 1.358279e-02	ci right 1.390518e-02	k: 27624	n:2010000
KS ci ratio: 2.846545e-02	ci left: 9.213703e-03	ci right 9.480251e-03	k: 18786	n:2010000
OR2S2   2010000 perm   1914 sec   (1050 perm/sec)   p_kst 9.346269e-03   p_cons 1.374328e-02   p_joint 3.233831e-04

Joint ci ratio: 1.531422e-01	ci left: 2.994247e-04	ci right 3.495508e-04	k: 654	n:2020000
Cons ci ratio: 2.336872e-02	ci left: 1.357805e-02	ci right 1.389959e-02	k: 27751	n:2020000
KS ci ratio: 2.839071e-02	ci left: 9.216752e-03	ci right 9.482677e-03	k: 18885	n:2020000
OR2S2   2020000 perm   1931 sec   (1046 perm/sec)   p_kst 9.349010e-03   p_cons 1.373812e-02   p_joint 3.237624e-04

Joint ci ratio: 1.523302e-01	ci left: 3.012663e-04	ci right 3.514088e-04	k: 661	n:2030000
Cons ci ratio: 2.330913e-02	ci left: 1.358070e-02	ci right 1.390147e-02	k: 27893	n:2030000
KS ci ratio: 2.830977e-02	ci left: 9.224175e-03	ci right 9.489543e-03	k: 18993	n:2030000
OR2S2   2030000 perm   1948 sec   (1042 perm/sec)   p_kst 9.356158e-03   p_cons 1.374039e-02   p_joint 3.256158e-04

Joint ci ratio: 1.521007e-01	ci left: 3.007325e-04	ci right 3.507039e-04	k: 663	n:2040000
Cons ci ratio: 2.325463e-02	ci left: 1.357797e-02	ci right 1.389792e-02	k: 28024	n:2040000
KS ci ratio: 2.824745e-02	ci left: 9.219844e-03	ci right 9.484493e-03	k: 19077	n:2040000
OR2S2   2040000 perm   1966 sec   (1038 perm/sec)   p_kst 9.351471e-03   p_cons 1.373725e-02   p_joint 3.250000e-04

Joint ci ratio: 1.515312e-01	ci left: 3.016119e-04	ci right 3.515247e-04	k: 668	n:2050000
Cons ci ratio: 2.319800e-02	ci left: 1.357818e-02	ci right 1.389734e-02	k: 28161	n:2050000
KS ci ratio: 2.817885e-02	ci left: 9.219915e-03	ci right 9.483913e-03	k: 19170	n:2050000
OR2S2   2050000 perm   1984 sec   (1033 perm/sec)   p_kst 9.351220e-03   p_cons 1.373707e-02   p_joint 3.258537e-04

Joint ci ratio: 1.508561e-01	ci left: 3.029502e-04	ci right 3.528410e-04	k: 674	n:2060000
Cons ci ratio: 2.314012e-02	ci left: 1.358032e-02	ci right 1.389872e-02	k: 28302	n:2060000
KS ci ratio: 2.810781e-02	ci left: 9.221914e-03	ci right 9.485293e-03	k: 19267	n:2060000
OR2S2   2060000 perm   2002 sec   (1029 perm/sec)   p_kst 9.352913e-03   p_cons 1.373883e-02   p_joint 3.271845e-04

Joint ci ratio: 1.506332e-01	ci left: 3.024164e-04	ci right 3.521391e-04	k: 676	n:2070000
Cons ci ratio: 2.307733e-02	ci left: 1.358868e-02	ci right 1.390640e-02	k: 28456	n:2070000
KS ci ratio: 2.804608e-02	ci left: 9.218138e-03	ci right 9.480822e-03	k: 19352	n:2070000
OR2S2   2070000 perm   2019 sec   (1025 perm/sec)   p_kst 9.348792e-03   p_cons 1.374686e-02   p_joint 3.265700e-04

Joint ci ratio: 1.500799e-01	ci left: 3.032759e-04	ci right 3.529403e-04	k: 681	n:2080000
Cons ci ratio: 2.302892e-02	ci left: 1.358071e-02	ci right 1.389757e-02	k: 28576	n:2080000
KS ci ratio: 2.798111e-02	ci left: 9.216786e-03	ci right 9.478814e-03	k: 19442	n:2080000
OR2S2   2080000 perm   2037 sec   (1021 perm/sec)   p_kst 9.347115e-03   p_cons 1.373846e-02   p_joint 3.274038e-04

Joint ci ratio: 1.497509e-01	ci left: 3.032064e-04	ci right 3.527408e-04	k: 684	n:2090000
Cons ci ratio: 2.297676e-02	ci left: 1.357757e-02	ci right 1.389363e-02	k: 28706	n:2090000
KS ci ratio: 2.790651e-02	ci left: 9.222100e-03	ci right 9.483568e-03	k: 19546	n:2090000
OR2S2   2090000 perm   2055 sec   (1017 perm/sec)   p_kst 9.352153e-03   p_cons 1.373493e-02   p_joint 3.272727e-04

Joint ci ratio: 1.488839e-01	ci left: 3.054298e-04	ci right 3.550128e-04	k: 692	n:2100000
Cons ci ratio: 2.291689e-02	ci left: 1.358394e-02	ci right 1.389931e-02	k: 28856	n:2100000
KS ci ratio: 2.784251e-02	ci left: 9.220744e-03	ci right 9.481564e-03	k: 19636	n:2100000
OR2S2   2100000 perm   2073 sec   (1013 perm/sec)   p_kst 9.350476e-03   p_cons 1.374095e-02   p_joint 3.295238e-04

Joint ci ratio: 1.485627e-01	ci left: 3.053511e-04	ci right 3.548049e-04	k: 695	n:2110000
Cons ci ratio: 2.285590e-02	ci left: 1.359213e-02	ci right 1.390684e-02	k: 29010	n:2110000
KS ci ratio: 2.777610e-02	ci left: 9.221284e-03	ci right 9.481488e-03	k: 19730	n:2110000
OR2S2   2110000 perm   2091 sec   (1009 perm/sec)   p_kst 9.350711e-03   p_cons 1.374882e-02   p_joint 3.293839e-04

Joint ci ratio: 1.485628e-01	ci left: 3.039108e-04	ci right 3.531314e-04	k: 695	n:2120000
Cons ci ratio: 2.279816e-02	ci left: 1.359696e-02	ci right 1.391098e-02	k: 29157	n:2120000
KS ci ratio: 2.771017e-02	ci left: 9.221819e-03	ci right 9.481411e-03	k: 19824	n:2120000
OR2S2   2120000 perm   2110 sec   (1005 perm/sec)   p_kst 9.350943e-03   p_cons 1.375330e-02   p_joint 3.278302e-04

Joint ci ratio: 1.481377e-01	ci left: 3.042922e-04	ci right 3.534210e-04	k: 699	n:2130000
Cons ci ratio: 2.274597e-02	ci left: 1.359567e-02	ci right 1.390894e-02	k: 29291	n:2130000
KS ci ratio: 2.765171e-02	ci left: 9.217687e-03	ci right 9.476607e-03	k: 19908	n:2130000
OR2S2   2130000 perm   2128 sec   (1001 perm/sec)   p_kst 9.346479e-03   p_cons 1.375164e-02   p_joint 3.281690e-04

Joint ci ratio: 1.477162e-01	ci left: 3.046703e-04	ci right 3.537078e-04	k: 703	n:2140000
Cons ci ratio: 2.269297e-02	ci left: 1.359580e-02	ci right 1.390833e-02	k: 29428	n:2140000
KS ci ratio: 2.757414e-02	ci left: 9.226590e-03	ci right 9.485021e-03	k: 20020	n:2140000
OR2S2   2140000 perm   2146 sec   (997 perm/sec)   p_kst 9.355140e-03   p_cons 1.375140e-02   p_joint 3.285047e-04

Joint ci ratio: 1.476115e-01	ci left: 3.037011e-04	ci right 3.525450e-04	k: 704	n:2150000
Cons ci ratio: 2.263956e-02	ci left: 1.359685e-02	ci right 1.390865e-02	k: 29567	n:2150000
KS ci ratio: 2.751585e-02	ci left: 9.222938e-03	ci right 9.480712e-03	k: 20105	n:2150000
OR2S2   2150000 perm   2165 sec   (993 perm/sec)   p_kst 9.351163e-03   p_cons 1.375209e-02   p_joint 3.274419e-04

Joint ci ratio: 1.470908e-01	ci left: 3.045246e-04	ci right 3.533129e-04	k: 709	n:2160000
Cons ci ratio: 2.258344e-02	ci left: 1.360157e-02	ci right 1.391270e-02	k: 29714	n:2160000
KS ci ratio: 2.744078e-02	ci left: 9.230816e-03	ci right 9.488095e-03	k: 20215	n:2160000
OR2S2   2160000 perm   2184 sec   (989 perm/sec)   p_kst 9.358796e-03   p_cons 1.375648e-02   p_joint 3.282407e-04

Joint ci ratio: 1.467810e-01	ci left: 3.044529e-04	ci right 3.531180e-04	k: 712	n:2170000
Cons ci ratio: 2.253080e-02	ci left: 1.360258e-02	ci right 1.391300e-02	k: 29853	n:2170000
KS ci ratio: 2.738060e-02	ci left: 9.229010e-03	ci right 9.485666e-03	k: 20304	n:2170000
OR2S2   2170000 perm   2202 sec   (985 perm/sec)   p_kst 9.356682e-03   p_cons 1.375714e-02   p_joint 3.281106e-04

Joint ci ratio: 1.465756e-01	ci left: 3.039401e-04	ci right 3.524493e-04	k: 714	n:2180000
Cons ci ratio: 2.247662e-02	ci left: 1.360587e-02	ci right 1.391561e-02	k: 29997	n:2180000
KS ci ratio: 2.731947e-02	ci left: 9.228133e-03	ci right 9.484182e-03	k: 20395	n:2180000
OR2S2   2180000 perm   2221 sec   (981 perm/sec)   p_kst 9.355505e-03   p_cons 1.376009e-02   p_joint 3.275229e-04

Joint ci ratio: 1.462691e-01	ci left: 3.038719e-04	ci right 3.522600e-04	k: 717	n:2190000
Cons ci ratio: 2.243076e-02	ci left: 1.359959e-02	ci right 1.390855e-02	k: 30120	n:2190000
KS ci ratio: 2.725539e-02	ci left: 9.229532e-03	ci right 9.485010e-03	k: 20491	n:2190000
OR2S2   2190000 perm   2240 sec   (978 perm/sec)   p_kst 9.356621e-03   p_cons 1.375342e-02   p_joint 3.273973e-04

Joint ci ratio: 1.455611e-01	ci left: 3.055564e-04	ci right 3.539567e-04	k: 724	n:2200000
Cons ci ratio: 2.238142e-02	ci left: 1.359789e-02	ci right 1.390612e-02	k: 30253	n:2200000
KS ci ratio: 2.716646e-02	ci left: 9.248075e-03	ci right 9.503219e-03	k: 20625	n:2200000
OR2S2   2200000 perm   2259 sec   (974 perm/sec)   p_kst 9.375000e-03   p_cons 1.375136e-02   p_joint 3.290909e-04

Joint ci ratio: 1.450617e-01	ci left: 3.063539e-04	ci right 3.546997e-04	k: 729	n:2210000
Cons ci ratio: 2.232682e-02	ci left: 1.360295e-02	ci right 1.391054e-02	k: 30401	n:2210000
KS ci ratio: 2.710476e-02	ci left: 9.248474e-03	ci right 9.503040e-03	k: 20719	n:2210000
OR2S2   2210000 perm   2278 sec   (970 perm/sec)   p_kst 9.375113e-03   p_cons 1.375611e-02   p_joint 3.298643e-04

Joint ci ratio: 1.449625e-01	ci left: 3.054081e-04	ci right 3.535687e-04	k: 730	n:2220000
Cons ci ratio: 2.228372e-02	ci left: 1.359454e-02	ci right 1.390133e-02	k: 30519	n:2220000
KS ci ratio: 2.704545e-02	ci left: 9.247528e-03	ci right 9.501502e-03	k: 20810	n:2220000
OR2S2   2220000 perm   2296 sec   (967 perm/sec)   p_kst 9.373874e-03   p_cons 1.374730e-02   p_joint 3.288288e-04

Joint ci ratio: 1.445675e-01	ci left: 3.057673e-04	ci right 3.538419e-04	k: 734	n:2230000
Cons ci ratio: 2.223167e-02	ci left: 1.359734e-02	ci right 1.390347e-02	k: 30662	n:2230000
KS ci ratio: 2.699175e-02	ci left: 9.243027e-03	ci right 9.496366e-03	k: 20893	n:2230000
OR2S2   2230000 perm   2315 sec   (963 perm/sec)   p_kst 9.369058e-03   p_cons 1.374978e-02   p_joint 3.291480e-04

Joint ci ratio: 1.442734e-01	ci left: 3.056931e-04	ci right 3.536498e-04	k: 737	n:2240000
Cons ci ratio: 2.217889e-02	ci left: 1.360146e-02	ci right 1.390694e-02	k: 30808	n:2240000
KS ci ratio: 2.693059e-02	ci left: 9.243888e-03	ci right 9.496668e-03	k: 20988	n:2240000
OR2S2   2240000 perm   2335 sec   (959 perm/sec)   p_kst 9.369643e-03   p_cons 1.375357e-02   p_joint 3.290179e-04

Joint ci ratio: 1.439811e-01	ci left: 3.056198e-04	ci right 3.534595e-04	k: 740	n:2250000
Cons ci ratio: 2.213011e-02	ci left: 1.360112e-02	ci right 1.390591e-02	k: 30944	n:2250000
KS ci ratio: 2.685506e-02	ci left: 9.254897e-03	ci right 9.507257e-03	k: 21106	n:2250000
OR2S2   2250000 perm   2354 sec   (956 perm/sec)   p_kst 9.380444e-03   p_cons 1.375289e-02   p_joint 3.288889e-04

Joint ci ratio: 1.434977e-01	ci left: 3.064003e-04	ci right 3.541874e-04	k: 745	n:2260000
Cons ci ratio: 2.208272e-02	ci left: 1.359946e-02	ci right 1.390356e-02	k: 31077	n:2260000
KS ci ratio: 2.678462e-02	ci left: 9.262732e-03	ci right 9.514633e-03	k: 21217	n:2260000
OR2S2   2260000 perm   2374 sec   (952 perm/sec)   p_kst 9.388053e-03   p_cons 1.375088e-02   p_joint 3.296460e-04

Joint ci ratio: 1.431145e-01	ci left: 3.067494e-04	ci right 3.544523e-04	k: 749	n:2270000
Cons ci ratio: 2.202885e-02	ci left: 1.360614e-02	ci right 1.390964e-02	k: 31229	n:2270000
KS ci ratio: 2.672232e-02	ci left: 9.265248e-03	ci right 9.516623e-03	k: 21316	n:2270000
OR2S2   2270000 perm   2393 sec   (949 perm/sec)   p_kst 9.390308e-03   p_cons 1.375727e-02   p_joint 3.299559e-04

Joint ci ratio: 1.428291e-01	ci left: 3.066728e-04	ci right 3.542605e-04	k: 752	n:2280000
Cons ci ratio: 2.198211e-02	ci left: 1.360448e-02	ci right 1.390729e-02	k: 31362	n:2280000
KS ci ratio: 2.666359e-02	ci left: 9.265564e-03	ci right 9.516386e-03	k: 21410	n:2280000
OR2S2   2280000 perm   2412 sec   (945 perm/sec)   p_kst 9.390351e-03   p_cons 1.375526e-02   p_joint 3.298246e-04

Joint ci ratio: 1.427344e-01	ci left: 3.057547e-04	ci right 3.531658e-04	k: 753	n:2290000
Cons ci ratio: 2.193144e-02	ci left: 1.360804e-02	ci right 1.391022e-02	k: 31507	n:2290000
KS ci ratio: 2.661150e-02	ci left: 9.261540e-03	ci right 9.511756e-03	k: 21494	n:2290000
OR2S2   2290000 perm   2432 sec   (942 perm/sec)   p_kst 9.386026e-03   p_cons 1.375852e-02   p_joint 3.288210e-04

Joint ci ratio: 1.422635e-01	ci left: 3.065217e-04	ci right 3.538817e-04	k: 758	n:2300000
Cons ci ratio: 2.187235e-02	ci left: 1.362238e-02	ci right 1.392406e-02	k: 31677	n:2300000
KS ci ratio: 2.655288e-02	ci left: 9.262302e-03	ci right 9.511979e-03	k: 21589	n:2300000
OR2S2   2300000 perm   2452 sec   (938 perm/sec)   p_kst 9.386522e-03   p_cons 1.377261e-02   p_joint 3.295652e-04

Joint ci ratio: 1.417971e-01	ci left: 3.072824e-04	ci right 3.545911e-04	k: 763	n:2310000
Cons ci ratio: 2.182695e-02	ci left: 1.362024e-02	ci right 1.392124e-02	k: 31809	n:2310000
KS ci ratio: 2.650020e-02	ci left: 9.259188e-03	ci right 9.508278e-03	k: 21675	n:2310000
OR2S2   2310000 perm   2472 sec   (935 perm/sec)   p_kst 9.383117e-03   p_cons 1.377013e-02   p_joint 3.303030e-04

Joint ci ratio: 1.416119e-01	ci left: 3.067894e-04	ci right 3.539553e-04	k: 765	n:2320000
Cons ci ratio: 2.178011e-02	ci left: 1.362027e-02	ci right 1.392061e-02	k: 31946	n:2320000
KS ci ratio: 2.644109e-02	ci left: 9.260811e-03	ci right 9.509381e-03	k: 21772	n:2320000
OR2S2   2320000 perm   2491 sec   (931 perm/sec)   p_kst 9.384483e-03   p_cons 1.376983e-02   p_joint 3.297414e-04

Joint ci ratio: 1.414275e-01	ci left: 3.063007e-04	ci right 3.533249e-04	k: 767	n:2330000
Cons ci ratio: 2.173287e-02	ci left: 1.362114e-02	ci right 1.392084e-02	k: 32085	n:2330000
KS ci ratio: 2.638419e-02	ci left: 9.261142e-03	ci right 9.509178e-03	k: 21866	n:2330000
OR2S2   2330000 perm   2511 sec   (928 perm/sec)   p_kst 9.384549e-03   p_cons 1.377039e-02   p_joint 3.291845e-04

Joint ci ratio: 1.411521e-01	ci left: 3.062284e-04	ci right 3.531423e-04	k: 770	n:2340000
Cons ci ratio: 2.168151e-02	ci left: 1.362754e-02	ci right 1.392666e-02	k: 32237	n:2340000
KS ci ratio: 2.633493e-02	ci left: 9.256376e-03	ci right 9.503815e-03	k: 21948	n:2340000
OR2S2   2340000 perm   2531 sec   (924 perm/sec)   p_kst 9.379487e-03   p_cons 1.377650e-02   p_joint 3.290598e-04

Joint ci ratio: 1.407873e-01	ci left: 3.065674e-04	ci right 3.534017e-04	k: 774	n:2350000
Cons ci ratio: 2.163186e-02	ci left: 1.363219e-02	ci right 1.393072e-02	k: 32385	n:2350000
KS ci ratio: 2.626910e-02	ci left: 9.263489e-03	ci right 9.510489e-03	k: 22058	n:2350000
OR2S2   2350000 perm   2551 sec   (921 perm/sec)   p_kst 9.386383e-03   p_cons 1.378085e-02   p_joint 3.293617e-04

Joint ci ratio: 1.405156e-01	ci left: 3.064949e-04	ci right 3.532201e-04	k: 777	n:2360000
Cons ci ratio: 2.158289e-02	ci left: 1.363637e-02	ci right 1.393431e-02	k: 32532	n:2360000
KS ci ratio: 2.621151e-02	ci left: 9.265069e-03	ci right 9.511561e-03	k: 22155	n:2360000
OR2S2   2360000 perm   2571 sec   (918 perm/sec)   p_kst 9.387712e-03   p_cons 1.378475e-02   p_joint 3.292373e-04

Joint ci ratio: 1.405157e-01	ci left: 3.052016e-04	ci right 3.517298e-04	k: 777	n:2370000
Cons ci ratio: 2.153693e-02	ci left: 1.363717e-02	ci right 1.393448e-02	k: 32671	n:2370000
KS ci ratio: 2.615252e-02	ci left: 9.267894e-03	ci right 9.513898e-03	k: 22255	n:2370000
OR2S2   2370000 perm   2592 sec   (914 perm/sec)   p_kst 9.390295e-03   p_cons 1.378523e-02   p_joint 3.278481e-04

Joint ci ratio: 1.401559e-01	ci left: 3.055409e-04	ci right 3.519915e-04	k: 781	n:2380000
Cons ci ratio: 2.149823e-02	ci left: 1.362918e-02	ci right 1.392578e-02	k: 32789	n:2380000
KS ci ratio: 2.610454e-02	ci left: 9.263181e-03	ci right 9.508603e-03	k: 22337	n:2380000
OR2S2   2380000 perm   2612 sec   (911 perm/sec)   p_kst 9.385294e-03   p_cons 1.377689e-02   p_joint 3.281513e-04

Joint ci ratio: 1.397099e-01	ci left: 3.062813e-04	ci right 3.526840e-04	k: 786	n:2390000
Cons ci ratio: 2.145247e-02	ci left: 1.363042e-02	ci right 1.392641e-02	k: 32929	n:2390000
KS ci ratio: 2.604628e-02	ci left: 9.265992e-03	ci right 9.510932e-03	k: 22437	n:2390000
OR2S2   2390000 perm   2633 sec   (908 perm/sec)   p_kst 9.387866e-03   p_cons 1.377782e-02   p_joint 3.288703e-04

Joint ci ratio: 1.392681e-01	ci left: 3.070158e-04	ci right 3.533705e-04	k: 791	n:2400000
Cons ci ratio: 2.140734e-02	ci left: 1.363123e-02	ci right 1.392661e-02	k: 33068	n:2400000
KS ci ratio: 2.599538e-02	ci left: 9.263811e-03	ci right 9.508208e-03	k: 22525	n:2400000
OR2S2   2400000 perm   2653 sec   (905 perm/sec)   p_kst 9.385417e-03   p_cons 1.377833e-02   p_joint 3.295833e-04

Joint ci ratio: 1.386566e-01	ci left: 3.085455e-04	ci right 3.549097e-04	k: 798	n:2410000
Cons ci ratio: 2.136052e-02	ci left: 1.363452e-02	ci right 1.392931e-02	k: 33213	n:2410000
KS ci ratio: 2.593263e-02	ci left: 9.270307e-03	ci right 9.514276e-03	k: 22634	n:2410000
OR2S2   2410000 perm   2674 sec   (901 perm/sec)   p_kst 9.391701e-03   p_cons 1.378133e-02   p_joint 3.311203e-04

Joint ci ratio: 1.382247e-01	ci left: 3.092651e-04	ci right 3.555807e-04	k: 803	n:2420000
Cons ci ratio: 2.131726e-02	ci left: 1.363366e-02	ci right 1.392783e-02	k: 33348	n:2420000
KS ci ratio: 2.587723e-02	ci left: 9.271823e-03	ci right 9.515303e-03	k: 22731	n:2420000
OR2S2   2420000 perm   2695 sec   (898 perm/sec)   p_kst 9.392975e-03   p_cons 1.378017e-02   p_joint 3.318182e-04

Joint ci ratio: 1.379676e-01	ci left: 3.091843e-04	ci right 3.553946e-04	k: 806	n:2430000
Cons ci ratio: 2.127071e-02	ci left: 1.363732e-02	ci right 1.393092e-02	k: 33494	n:2430000
KS ci ratio: 2.582047e-02	ci left: 9.274554e-03	ci right 9.517564e-03	k: 22831	n:2430000
OR2S2   2430000 perm   2715 sec   (895 perm/sec)   p_kst 9.395473e-03   p_cons 1.378354e-02   p_joint 3.316872e-04

Joint ci ratio: 1.377970e-01	ci left: 3.087085e-04	ci right 3.547860e-04	k: 808	n:2440000
Cons ci ratio: 2.122447e-02	ci left: 1.364095e-02	ci right 1.393398e-02	k: 33640	n:2440000
KS ci ratio: 2.577940e-02	ci left: 9.266268e-03	ci right 9.508669e-03	k: 22904	n:2440000
OR2S2   2440000 perm   2735 sec   (892 perm/sec)   p_kst 9.386885e-03   p_cons 1.378689e-02   p_joint 3.311475e-04

Joint ci ratio: 1.375422e-01	ci left: 3.086308e-04	ci right 3.546046e-04	k: 811	n:2450000
Cons ci ratio: 2.118170e-02	ci left: 1.364049e-02	ci right 1.393291e-02	k: 33776	n:2450000
KS ci ratio: 2.573174e-02	ci left: 9.262917e-03	ci right 9.504775e-03	k: 22989	n:2450000
OR2S2   2450000 perm   2757 sec   (889 perm/sec)   p_kst 9.383265e-03   p_cons 1.378612e-02   p_joint 3.310204e-04

Joint ci ratio: 1.370368e-01	ci left: 3.097315e-04	ci right 3.556858e-04	k: 817	n:2460000
Cons ci ratio: 2.114268e-02	ci left: 1.363558e-02	ci right 1.392735e-02	k: 33901	n:2460000
KS ci ratio: 2.567369e-02	ci left: 9.267268e-03	ci right 9.508686e-03	k: 23093	n:2460000
OR2S2   2460000 perm   2777 sec   (886 perm/sec)   p_kst 9.387398e-03   p_cons 1.378089e-02   p_joint 3.321138e-04

Joint ci ratio: 1.111581e-01	ci left: 4.752611e-04	ci right 5.315888e-04	k: 1242	n:2470000
Cons ci ratio: 2.109757e-02	ci left: 1.363877e-02	ci right 1.392998e-02	k: 34046	n:2470000
KS ci ratio: 2.562494e-02	ci left: 9.265148e-03	ci right 9.506045e-03	k: 23181	n:2470000
OR2S2   2470000 perm   2798 sec   (883 perm/sec)   p_kst 9.385020e-03   p_cons 1.378381e-02   p_joint 5.028340e-04

Joint ci ratio: 1.108908e-01	ci left: 4.756969e-04	ci right 5.319318e-04	k: 1248	n:2480000
Cons ci ratio: 2.105713e-02	ci left: 1.363632e-02	ci right 1.392691e-02	k: 34177	n:2480000
KS ci ratio: 2.557370e-02	ci left: 9.265048e-03	ci right 9.505455e-03	k: 23274	n:2480000
OR2S2   2480000 perm   2820 sec   (880 perm/sec)   p_kst 9.384677e-03   p_cons 1.378105e-02   p_joint 5.032258e-04

Joint ci ratio: 1.361245e-01	ci left: 3.102665e-04	ci right 3.559690e-04	k: 828	n:2490000
Cons ci ratio: 2.101165e-02	ci left: 1.364068e-02	ci right 1.393073e-02	k: 34325	n:2490000
KS ci ratio: 2.552001e-02	ci left: 9.266945e-03	ci right 9.506889e-03	k: 23372	n:2490000
OR2S2   2490000 perm   2841 sec   (877 perm/sec)   p_kst 9.386345e-03   p_cons 1.378514e-02   p_joint 3.325301e-04

Joint ci ratio: 9.679526e-02	ci left: 6.238606e-04	ci right 6.877053e-04	k: 1638	n:2500000
Cons ci ratio: 2.097416e-02	ci left: 1.363506e-02	ci right 1.392447e-02	k: 34448	n:2500000
KS ci ratio: 2.546994e-02	ci left: 9.266443e-03	ci right 9.505896e-03	k: 23464	n:2500000
OR2S2   2500000 perm   2862 sec   (873 perm/sec)   p_kst 9.385600e-03   p_cons 1.377920e-02   p_joint 6.552000e-04

Outputting figure to mutsig2_images.part000000000121/OR2S2.2_964_2500000_0.0093856_0.013779_0.0006552.png
                gene_name: OR2S2
               theta_stop: 0.097 
                    nperm: 2500000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.00066 
     ci_joint_bounds_left: 0.00062 
    ci_joint_bounds_right: 0.00069 

Current progress: 98 percent done.
OR3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 2.866778e-02	ci left: 6.420678e-01	ci right 6.608439e-01	k: 6515	n:10000
OR3A2   10000 perm   1 sec   (6870 perm/sec)   p_kst 6.515000e-01   p_cons 6.600000e-02   p_joint 2.061000e-01

Joint ci ratio: 9.490190e-02	ci left: 7.485789e-02	ci right 8.236516e-02	k: 1571	n:20000
Cons ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
KS ci ratio: 2.041730e-02	ci left: 6.415859e-01	ci right 6.548710e-01	k: 12965	n:20000
OR3A2   20000 perm   3 sec   (6007 perm/sec)   p_kst 6.482500e-01   p_cons 7.225000e-02   p_joint 7.855000e-02

Outputting figure to mutsig2_images.part000000000121/OR3A2.2_970_20000_0.64825_0.07225_0.07855.png
                gene_name: OR3A2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 99 percent done.
OR4D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
Cons ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
KS ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
OR4D1   10000 perm   1 sec   (7049 perm/sec)   p_kst 4.304000e-01   p_cons 2.173000e-01   p_joint 4.022000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D1.2_935_10000_0.4304_0.2173_0.4022.png
                gene_name: OR4D1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000121
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 121 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 4422266: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000122> was used as the working directory.
Started at Wed Oct 24 18:01:58 2012
Results reported at Wed Oct 24 18:17:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000122.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000122.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 122  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000122.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1104.18 sec.
    Max Memory :      5253 MB
    Max Swap   :      7816 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
122
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 122
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 122: processing genes 10948 - 11037
Calculating significance of each gene.
Using projection method.
10948	OR4K2	1.181579e-01
10949	OR4K5	1.122974e-01
10950	OR4L1	1.646660e-04
10951	OR4M1	7.095378e-04
10952	OR4M2	1
10953	OR4N2	5.907205e-01
10954	OR4N4	6.311055e-01
10955	OR4N5	7.652473e-01
10956	OR4P4	1.265981e-03
10957	OR4Q3	6.933831e-01
10958	OR4S1	2.810115e-01
10959	OR4S2	1.197701e-05
10960	OR4X1	8.854808e-02
10961	OR4X2	1.063640e-01
10962	OR51A2	1.145471e-01
10963	OR51A4	1.158696e-01
10964	OR51A7	5.594018e-04
10965	OR51B2	1
10966	OR51B4	2.741576e-01
10967	OR51B5	1.313514e-01
10968	OR51B6	3.261164e-01
10969	OR51D1	1
10970	OR51E1	1
10971	OR51E2	4.164166e-01
10972	OR51F1	1
10973	OR51F2	2.373842e-01
10974	OR51G1	6.809912e-01
10975	OR51G2	6.789584e-02
10976	OR51I1	7.069357e-03
10977	OR51I2	2.494747e-02
10978	OR51L1	2.834190e-01
10979	OR51M1	7.704832e-01
10980	OR51Q1	1
10981	OR51S1	1.712026e-01
10982	OR51T1	4.960811e-01
10983	OR51V1	1.103844e-01
10984	OR52A1	1
10985	OR52A4	1.746505e-02
10986	OR52A5	6.445428e-02
10987	OR52B2	4.901494e-01
10988	OR52B4	2.752529e-02
10989	OR52B6	7.326103e-02
10990	OR52D1	5.565470e-01
10991	OR52E2	5.366652e-03
10992	OR52E4	1.625399e-05
10993	OR52E6	1
10994	OR52E8	2.828093e-01
10995	OR52H1	7.260647e-01
10996	OR52I1	6.752590e-01
10997	OR52I2	1
10998	OR52J3	8.634063e-03
10999	OR52K1	3.250991e-03
11000/18094 11000	OR52K2	1
11001	OR52L1	7.817800e-01
11002	OR52M1	6.854999e-02
11003	OR52N1	2.501870e-03
11004	OR52N2	6.492466e-01
11005	OR52N4	1
11006	OR52N5	2.169826e-01
11007	OR52R1	1.544948e-02
11008	OR52W1	1
11009	OR56A1	3.881778e-03
11010	OR56A3	6.231117e-01
11011	OR56A4	4.080092e-02
11012	OR56A5	6.558025e-01
11013	OR56B1	3.258438e-02
11014	OR56B4	9.868147e-03
11015	OR5A1	1
11016	OR5A2	2.684145e-02
11017	OR5AC2	7.272212e-01
11018	OR5AK2	7.900230e-01
11019	OR5AN1	2.464706e-02
11020	OR5AP2	7.529540e-03
11021	OR5AR1	1.182284e-01
11022	OR5AS1	1.082740e-01
11023	OR5AU1	1
11024	OR5B12	2.261939e-02
11025	OR5B17	5.991663e-01
11026	OR5B2	3.445976e-03
11027	OR5B21	6.668095e-03
11028	OR5B3	2.477298e-04
11029	OR5C1	9.169983e-01
11030	OR5D13	2.827602e-04
11031	OR5D14	1.518211e-06
11032	OR5D16	4.912707e-05
11033	OR5D18	1
11034	OR5F1	7.690070e-06
11035	OR5H1	5.146452e-03
11036	OR5H14	2.142058e-02
11037	OR5H15	5.597417e-01
Done

Running MutSig 2:
Scatter job 122: processing genes 10948 - 11037
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR5D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
Cons ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
KS ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
OR5D14   10000 perm   2 sec   (4772 perm/sec)   p_kst 4.619000e-01   p_cons 3.769000e-01   p_joint 4.247000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D14.20_948_10000_0.4619_0.3769_0.4247.png
                gene_name: OR5D14
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 1 percent done.
OR5F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
Cons ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
KS ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
OR5F1   10000 perm   2 sec   (4829 perm/sec)   p_kst 5.571000e-01   p_cons 8.499000e-01   p_joint 7.723000e-01

Outputting figure to mutsig2_images.part000000000122/OR5F1.15_948_10000_0.5571_0.8499_0.7723.png
                gene_name: OR5F1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 2 percent done.
OR4Q3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
Cons ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
KS ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
OR4Q3   10000 perm   2 sec   (4974 perm/sec)   p_kst 6.833000e-01   p_cons 2.491000e-01   p_joint 4.969000e-01

Outputting figure to mutsig2_images.part000000000122/OR4Q3.14_944_10000_0.6833_0.2491_0.4969.png
                gene_name: OR4Q3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
OR4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
Cons ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
KS ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
OR4M1   10000 perm   2 sec   (5662 perm/sec)   p_kst 4.780000e-01   p_cons 5.304000e-01   p_joint 7.143000e-01

Outputting figure to mutsig2_images.part000000000122/OR4M1.13_945_10000_0.478_0.5304_0.7143.png
                gene_name: OR4M1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 5 percent done.
OR4N5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
Cons ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
KS ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
OR4N5   10000 perm   2 sec   (5958 perm/sec)   p_kst 1.081000e-01   p_cons 6.778000e-01   p_joint 2.468000e-01

Joint ci ratio: 5.538456e-02	ci left: 1.947227e-01	ci right 2.058646e-01	k: 4005	n:20000
Cons ci ratio: 1.904693e-02	ci left: 6.727304e-01	ci right 6.857175e-01	k: 13585	n:20000
KS ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
OR4N5   20000 perm   4 sec   (5267 perm/sec)   p_kst 1.088500e-01   p_cons 6.792500e-01   p_joint 2.002500e-01

Outputting figure to mutsig2_images.part000000000122/OR4N5.13_930_20000_0.10885_0.67925_0.20025.png
                gene_name: OR4N5
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 6 percent done.
OR4M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
Cons ci ratio: 3.561814e-02	ci left: 5.378822e-01	ci right 5.574900e-01	k: 5477	n:10000
KS ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
OR4M2   10000 perm   2 sec   (6191 perm/sec)   p_kst 6.130000e-02   p_cons 5.477000e-01   p_joint 1.494000e-01

Joint ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
Cons ci ratio: 2.563034e-02	ci left: 5.321114e-01	ci right 5.459773e-01	k: 10781	n:20000
KS ci ratio: 1.086079e-01	ci left: 5.781956e-02	ci right 6.450873e-02	k: 1222	n:20000
OR4M2   20000 perm   4 sec   (5399 perm/sec)   p_kst 6.110000e-02   p_cons 5.390500e-01   p_joint 1.155000e-01

Joint ci ratio: 6.498529e-02	ci left: 1.046406e-01	ci right 1.117021e-01	k: 3244	n:30000
Cons ci ratio: 2.094229e-02	ci left: 5.330389e-01	ci right 5.443536e-01	k: 16161	n:30000
KS ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
OR4M2   30000 perm   6 sec   (5114 perm/sec)   p_kst 6.246667e-02   p_cons 5.387000e-01   p_joint 1.081333e-01

Outputting figure to mutsig2_images.part000000000122/OR4M2.12_946_30000_0.062467_0.5387_0.10813.png
                gene_name: OR4M2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 7 percent done.
OR4N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
Cons ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
KS ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
OR4N2   10000 perm   2 sec   (5015 perm/sec)   p_kst 6.083000e-01   p_cons 4.052000e-01   p_joint 7.316000e-01

Outputting figure to mutsig2_images.part000000000122/OR4N2.12_927_10000_0.6083_0.4052_0.7316.png
                gene_name: OR4N2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 8 percent done.
OR51V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
KS ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
OR51V1   10000 perm   2 sec   (6195 perm/sec)   p_kst 9.504000e-01   p_cons 1.281000e-01   p_joint 3.783000e-01

Joint ci ratio: 3.988305e-02	ci left: 3.191561e-01	ci right 3.321946e-01	k: 6513	n:20000
Cons ci ratio: 6.955317e-02	ci left: 1.322626e-01	ci right 1.418432e-01	k: 2740	n:20000
KS ci ratio: 6.311279e-03	ci left: 9.476599e-01	ci right 9.537082e-01	k: 19015	n:20000
OR51V1   20000 perm   4 sec   (5346 perm/sec)   p_kst 9.507500e-01   p_cons 1.370000e-01   p_joint 3.256500e-01

Outputting figure to mutsig2_images.part000000000122/OR51V1.12_969_20000_0.95075_0.137_0.32565.png
                gene_name: OR51V1
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 10 percent done.
OR5D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
Cons ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
KS ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
OR5D16   10000 perm   2 sec   (5328 perm/sec)   p_kst 6.208000e-01   p_cons 3.069000e-01   p_joint 6.020000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D16.12_989_10000_0.6208_0.3069_0.602.png
                gene_name: OR5D16
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 11 percent done.
OR4P4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
OR4P4   10000 perm   2 sec   (5345 perm/sec)   p_kst 7.037000e-01   p_cons 7.475000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4P4.11_942_10000_0.7037_0.7475_1.png
                gene_name: OR4P4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
OR4S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
Cons ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
KS ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
OR4S2   10000 perm   2 sec   (5433 perm/sec)   p_kst 5.775000e-01   p_cons 9.416000e-01   p_joint 7.871000e-01

Outputting figure to mutsig2_images.part000000000122/OR4S2.10_940_10000_0.5775_0.9416_0.7871.png
                gene_name: OR4S2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 13 percent done.
OR52E4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
OR52E4   10000 perm   2 sec   (5812 perm/sec)   p_kst 6.847000e-01   p_cons 9.360000e-02   p_joint 2.759000e-01

Joint ci ratio: 5.446794e-02	ci left: 2.000666e-01	ci right 2.113191e-01	k: 4113	n:20000
Cons ci ratio: 8.811083e-02	ci left: 8.606860e-02	ci right 9.405105e-02	k: 1800	n:20000
KS ci ratio: 1.900979e-02	ci left: 6.735848e-01	ci right 6.865628e-01	k: 13602	n:20000
OR52E4   20000 perm   4 sec   (5129 perm/sec)   p_kst 6.801000e-01   p_cons 9.000000e-02   p_joint 2.056500e-01

Outputting figure to mutsig2_images.part000000000122/OR52E4.10_941_20000_0.6801_0.09_0.20565.png
                gene_name: OR52E4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 14 percent done.
OR52R1
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
Cons ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KS ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
OR52R1   10000 perm   2 sec   (5012 perm/sec)   p_kst 6.473000e-01   p_cons 7.495000e-01   p_joint 8.207000e-01

Outputting figure to mutsig2_images.part000000000122/OR52R1.8_951_10000_0.6473_0.7495_0.8207.png
                gene_name: OR52R1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
OR5B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
Cons ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
KS ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
OR5B12   10000 perm   2 sec   (5426 perm/sec)   p_kst 4.294000e-01   p_cons 1.868000e-01   p_joint 3.533000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B12.10_949_10000_0.4294_0.1868_0.3533.png
                gene_name: OR5B12
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 17 percent done.
OR5D13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
Cons ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
OR5D13   10000 perm   2 sec   (5861 perm/sec)   p_kst 2.185000e-01   p_cons 8.312000e-01   p_joint 4.427000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D13.10_948_10000_0.2185_0.8312_0.4427.png
                gene_name: OR5D13
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 18 percent done.
OR4K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
Cons ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
KS ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
OR4K5   10000 perm   2 sec   (4900 perm/sec)   p_kst 1.436000e-01   p_cons 8.762000e-01   p_joint 2.787000e-01

Outputting figure to mutsig2_images.part000000000122/OR4K5.9_974_10000_0.1436_0.8762_0.2787.png
                gene_name: OR4K5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 19 percent done.
OR4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
KS ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
OR4L1   10000 perm   2 sec   (5523 perm/sec)   p_kst 7.028000e-01   p_cons 2.777000e-01   p_joint 6.118000e-01

Outputting figure to mutsig2_images.part000000000122/OR4L1.9_943_10000_0.7028_0.2777_0.6118.png
                gene_name: OR4L1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 20 percent done.
OR51A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
Cons ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
KS ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
OR51A7   10000 perm   2 sec   (5178 perm/sec)   p_kst 4.916000e-01   p_cons 7.060000e-02   p_joint 1.779000e-01

Joint ci ratio: 5.825519e-02	ci left: 1.791948e-01	ci right 1.899971e-01	k: 3691	n:20000
Cons ci ratio: 1.031871e-01	ci left: 6.381704e-02	ci right 7.080940e-02	k: 1345	n:20000
KS ci ratio: 2.831890e-02	ci left: 4.822991e-01	ci right 4.962041e-01	k: 9785	n:20000
OR51A7   20000 perm   4 sec   (4502 perm/sec)   p_kst 4.892500e-01   p_cons 6.725000e-02   p_joint 1.845500e-01

Joint ci ratio: 4.394025e-02	ci left: 2.050389e-01	ci right 2.142841e-01	k: 6289	n:30000
Cons ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
KS ci ratio: 2.310515e-02	ci left: 4.839612e-01	ci right 4.953075e-01	k: 14689	n:30000
OR51A7   30000 perm   7 sec   (4356 perm/sec)   p_kst 4.896333e-01   p_cons 6.833333e-02   p_joint 2.096333e-01

Outputting figure to mutsig2_images.part000000000122/OR51A7.9_941_30000_0.48963_0.068333_0.20963.png
                gene_name: OR51A7
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 22 percent done.
OR51F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
Cons ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
KS ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
OR51F2   10000 perm   2 sec   (5863 perm/sec)   p_kst 3.957000e-01   p_cons 4.921000e-01   p_joint 7.105000e-01

Outputting figure to mutsig2_images.part000000000122/OR51F2.9_1031_10000_0.3957_0.4921_0.7105.png
                gene_name: OR51F2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 23 percent done.
OR56A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
Cons ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
OR56A3   10000 perm   2 sec   (5590 perm/sec)   p_kst 6.404000e-01   p_cons 7.029000e-01   p_joint 9.355000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A3.9_950_10000_0.6404_0.7029_0.9355.png
                gene_name: OR56A3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 24 percent done.
OR5AS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
OR5AS1   10000 perm   2 sec   (5494 perm/sec)   p_kst 4.280000e-02   p_cons 1.000000e-02   p_joint 1.380000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
KS ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
OR5AS1   20000 perm   4 sec   (5035 perm/sec)   p_kst 4.280000e-02   p_cons 9.800000e-03   p_joint 5.350000e-03

Joint ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
Cons ci ratio: 2.233110e-01	ci left: 9.030982e-03	ci right 1.133203e-02	k: 304	n:30000
KS ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
OR5AS1   30000 perm   6 sec   (4828 perm/sec)   p_kst 4.540000e-02   p_cons 1.013333e-02   p_joint 3.400000e-03

Joint ci ratio: 1.638920e-01	ci left: 1.294346e-02	ci right 1.527787e-02	k: 563	n:40000
Cons ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
KS ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
OR5AS1   40000 perm   9 sec   (4690 perm/sec)   p_kst 4.500000e-02   p_cons 9.850000e-03   p_joint 1.407500e-02

Joint ci ratio: 2.076047e-01	ci left: 6.344851e-03	ci right 7.833240e-03	k: 353	n:50000
Cons ci ratio: 1.756737e-01	ci left: 8.993356e-03	ci right 1.074425e-02	k: 492	n:50000
KS ci ratio: 8.094784e-02	ci left: 4.298364e-02	ci right 4.662944e-02	k: 2239	n:50000
OR5AS1   50000 perm   11 sec   (4562 perm/sec)   p_kst 4.478000e-02   p_cons 9.840000e-03   p_joint 7.060000e-03

Joint ci ratio: 2.042741e-01	ci left: 5.476804e-03	ci right 6.738354e-03	k: 365	n:60000
Cons ci ratio: 1.571272e-01	ci left: 9.459494e-03	ci right 1.108840e-02	k: 615	n:60000
KS ci ratio: 7.311535e-02	ci left: 4.404269e-02	ci right 4.740143e-02	k: 2742	n:60000
OR5AS1   60000 perm   13 sec   (4469 perm/sec)   p_kst 4.570000e-02   p_cons 1.025000e-02   p_joint 6.083333e-03

Joint ci ratio: 2.016135e-01	ci left: 4.829834e-03	ci right 5.926067e-03	k: 375	n:70000
Cons ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
KS ci ratio: 6.730875e-02	ci left: 4.465663e-02	ci right 4.778113e-02	k: 3234	n:70000
OR5AS1   70000 perm   16 sec   (4378 perm/sec)   p_kst 4.620000e-02   p_cons 1.030000e-02   p_joint 5.357143e-03

Joint ci ratio: 1.449231e-01	ci left: 8.405376e-03	ci right 9.730594e-03	k: 724	n:80000
Cons ci ratio: 1.353567e-01	ci left: 9.672315e-03	ci right 1.108853e-02	k: 829	n:80000
KS ci ratio: 6.286490e-02	ci left: 4.489103e-02	ci right 4.781698e-02	k: 3707	n:80000
OR5AS1   80000 perm   19 sec   (4298 perm/sec)   p_kst 4.633750e-02   p_cons 1.036250e-02   p_joint 9.050000e-03

Joint ci ratio: 1.535553e-01	ci left: 6.636638e-03	ci right 7.751036e-03	k: 646	n:90000
Cons ci ratio: 1.277366e-01	ci left: 9.693676e-03	ci right 1.102706e-02	k: 931	n:90000
KS ci ratio: 5.915449e-02	ci left: 4.514437e-02	ci right 4.790718e-02	k: 4186	n:90000
OR5AS1   90000 perm   21 sec   (4220 perm/sec)   p_kst 4.651111e-02   p_cons 1.034444e-02   p_joint 7.177778e-03

Joint ci ratio: 1.206270e-01	ci left: 9.819261e-03	ci right 1.108937e-02	k: 1044	n:100000
Cons ci ratio: 1.207439e-01	ci left: 9.799859e-03	ci right 1.106878e-02	k: 1042	n:100000
KS ci ratio: 5.612664e-02	ci left: 4.520310e-02	ci right 4.782329e-02	k: 4650	n:100000
OR5AS1   100000 perm   24 sec   (4146 perm/sec)   p_kst 4.650000e-02   p_cons 1.042000e-02   p_joint 1.044000e-02

Joint ci ratio: 1.401310e-01	ci left: 6.568438e-03	ci right 7.566908e-03	k: 776	n:110000
Cons ci ratio: 1.150387e-01	ci left: 9.844204e-03	ci right 1.105454e-02	k: 1148	n:110000
KS ci ratio: 5.426477e-02	ci left: 4.406056e-02	ci right 4.652712e-02	k: 4981	n:110000
OR5AS1   110000 perm   27 sec   (4071 perm/sec)   p_kst 4.528182e-02   p_cons 1.043636e-02   p_joint 7.054545e-03

Joint ci ratio: 1.373539e-01	ci left: 6.278413e-03	ci right 7.212331e-03	k: 808	n:120000
Cons ci ratio: 1.098958e-01	ci left: 9.914760e-03	ci right 1.107575e-02	k: 1258	n:120000
KS ci ratio: 5.189913e-02	ci left: 4.420427e-02	ci right 4.656776e-02	k: 5445	n:120000
OR5AS1   120000 perm   30 sec   (4001 perm/sec)   p_kst 4.537500e-02   p_cons 1.048333e-02   p_joint 6.733333e-03

Joint ci ratio: 1.409396e-01	ci left: 5.498318e-03	ci right 6.339336e-03	k: 768	n:130000
Cons ci ratio: 1.056988e-01	ci left: 9.915549e-03	ci right 1.102953e-02	k: 1360	n:130000
KS ci ratio: 4.991555e-02	ci left: 4.416064e-02	ci right 4.642893e-02	k: 5887	n:130000
OR5AS1   130000 perm   33 sec   (3928 perm/sec)   p_kst 4.528462e-02   p_cons 1.046154e-02   p_joint 5.907692e-03

Joint ci ratio: 1.187097e-01	ci left: 7.269565e-03	ci right 8.193856e-03	k: 1081	n:140000
Cons ci ratio: 1.020897e-01	ci left: 9.889101e-03	ci right 1.095989e-02	k: 1458	n:140000
KS ci ratio: 4.808365e-02	ci left: 4.423063e-02	ci right 4.641682e-02	k: 6344	n:140000
OR5AS1   140000 perm   36 sec   (3864 perm/sec)   p_kst 4.531429e-02   p_cons 1.041429e-02   p_joint 7.721429e-03

Joint ci ratio: 1.180284e-01	ci left: 6.868943e-03	ci right 7.736932e-03	k: 1094	n:150000
Cons ci ratio: 9.898750e-02	ci left: 9.834224e-03	ci right 1.086483e-02	k: 1551	n:150000
KS ci ratio: 4.647907e-02	ci left: 4.422009e-02	ci right 4.633087e-02	k: 6790	n:150000
OR5AS1   150000 perm   39 sec   (3803 perm/sec)   p_kst 4.526667e-02   p_cons 1.034000e-02   p_joint 7.293333e-03

Joint ci ratio: 1.247713e-01	ci left: 5.748544e-03	ci right 6.519517e-03	k: 980	n:160000
Cons ci ratio: 9.635922e-02	ci left: 9.743933e-03	ci right 1.073643e-02	k: 1637	n:160000
KS ci ratio: 4.502184e-02	ci left: 4.421812e-02	ci right 4.626090e-02	k: 7237	n:160000
OR5AS1   160000 perm   43 sec   (3739 perm/sec)   p_kst 4.523125e-02   p_cons 1.023125e-02   p_joint 6.125000e-03

Joint ci ratio: 1.242853e-01	ci left: 5.455935e-03	ci right 6.184602e-03	k: 988	n:170000
Cons ci ratio: 9.349237e-02	ci left: 9.756520e-03	ci right 1.071912e-02	k: 1739	n:170000
KS ci ratio: 4.455983e-02	ci left: 4.257013e-02	ci right 4.451607e-02	k: 7401	n:170000
OR5AS1   170000 perm   46 sec   (3681 perm/sec)   p_kst 4.353529e-02   p_cons 1.022941e-02   p_joint 5.811765e-03

Joint ci ratio: 1.206780e-01	ci left: 5.475952e-03	ci right 6.184550e-03	k: 1048	n:180000
Cons ci ratio: 9.076754e-02	ci left: 9.789819e-03	ci right 1.072606e-02	k: 1845	n:180000
KS ci ratio: 4.325942e-02	ci left: 4.268322e-02	ci right 4.457596e-02	k: 7852	n:180000
OR5AS1   180000 perm   50 sec   (3623 perm/sec)   p_kst 4.362222e-02   p_cons 1.025000e-02   p_joint 5.822222e-03

Joint ci ratio: 1.106871e-01	ci left: 6.194758e-03	ci right 6.925683e-03	k: 1245	n:190000
Cons ci ratio: 8.824502e-02	ci left: 9.825125e-03	ci right 1.073728e-02	k: 1952	n:190000
KS ci ratio: 4.222368e-02	ci left: 4.247774e-02	ci right 4.431517e-02	k: 8244	n:190000
OR5AS1   190000 perm   53 sec   (3568 perm/sec)   p_kst 4.338947e-02   p_cons 1.027368e-02   p_joint 6.552632e-03

Joint ci ratio: 1.079914e-01	ci left: 6.191405e-03	ci right 6.903011e-03	k: 1308	n:200000
Cons ci ratio: 8.602731e-02	ci left: 9.832757e-03	ci right 1.072152e-02	k: 2054	n:200000
KS ci ratio: 4.108766e-02	ci left: 4.263491e-02	ci right 4.442835e-02	k: 8705	n:200000
OR5AS1   200000 perm   57 sec   (3514 perm/sec)   p_kst 4.352500e-02   p_cons 1.027000e-02   p_joint 6.540000e-03

Joint ci ratio: 1.063452e-01	ci left: 6.086563e-03	ci right 6.774786e-03	k: 1349	n:210000
Cons ci ratio: 8.402788e-02	ci left: 9.825933e-03	ci right 1.069243e-02	k: 2153	n:210000
KS ci ratio: 4.014868e-02	ci left: 4.255133e-02	ci right 4.429940e-02	k: 9118	n:210000
OR5AS1   210000 perm   61 sec   (3461 perm/sec)   p_kst 4.341905e-02   p_cons 1.025238e-02   p_joint 6.423810e-03

Joint ci ratio: 1.065595e-01	ci left: 5.787731e-03	ci right 6.443565e-03	k: 1344	n:220000
Cons ci ratio: 8.225393e-02	ci left: 9.797683e-03	ci right 1.064257e-02	k: 2247	n:220000
KS ci ratio: 3.916829e-02	ci left: 4.269191e-02	ci right 4.440196e-02	k: 9579	n:220000
OR5AS1   220000 perm   65 sec   (3410 perm/sec)   p_kst 4.354091e-02   p_cons 1.021364e-02   p_joint 6.109091e-03

Joint ci ratio: 1.054750e-01	ci left: 5.654581e-03	ci right 6.288401e-03	k: 1372	n:230000
Cons ci ratio: 8.057041e-02	ci left: 9.776326e-03	ci right 1.060131e-02	k: 2342	n:230000
KS ci ratio: 3.828827e-02	ci left: 4.275181e-02	ci right 4.442493e-02	k: 10024	n:230000
OR5AS1   230000 perm   68 sec   (3361 perm/sec)   p_kst 4.358261e-02   p_cons 1.018261e-02   p_joint 5.965217e-03

Joint ci ratio: 1.043852e-01	ci left: 5.536618e-03	ci right 6.150408e-03	k: 1401	n:240000
Cons ci ratio: 7.885559e-02	ci left: 9.789593e-03	ci right 1.059730e-02	k: 2445	n:240000
KS ci ratio: 3.753066e-02	ci left: 4.266258e-02	ci right 4.429846e-02	k: 10434	n:240000
OR5AS1   240000 perm   72 sec   (3313 perm/sec)   p_kst 4.347500e-02   p_cons 1.018750e-02   p_joint 5.837500e-03

Joint ci ratio: 1.026451e-01	ci left: 5.502177e-03	ci right 6.101367e-03	k: 1449	n:250000
Cons ci ratio: 7.744557e-02	ci left: 9.750966e-03	ci right 1.054045e-02	k: 2535	n:250000
KS ci ratio: 3.679503e-02	ci left: 4.262838e-02	ci right 4.423023e-02	k: 10856	n:250000
OR5AS1   250000 perm   77 sec   (3268 perm/sec)   p_kst 4.342400e-02   p_cons 1.014000e-02   p_joint 5.796000e-03

Joint ci ratio: 1.021969e-01	ci left: 5.339251e-03	ci right 5.918007e-03	k: 1462	n:260000
Cons ci ratio: 7.610857e-02	ci left: 9.715430e-03	ci right 1.048786e-02	k: 2625	n:260000
KS ci ratio: 3.611944e-02	ci left: 4.255515e-02	ci right 4.412428e-02	k: 11267	n:260000
OR5AS1   260000 perm   81 sec   (3223 perm/sec)   p_kst 4.333462e-02   p_cons 1.009615e-02   p_joint 5.623077e-03

Joint ci ratio: 1.004285e-01	ci left: 5.329212e-03	ci right 5.896294e-03	k: 1514	n:270000
Cons ci ratio: 7.461678e-02	ci left: 9.740797e-03	ci right 1.049940e-02	k: 2731	n:270000
KS ci ratio: 3.539746e-02	ci left: 4.267856e-02	ci right 4.422014e-02	k: 11730	n:270000
OR5AS1   270000 perm   85 sec   (3180 perm/sec)   p_kst 4.344444e-02   p_cons 1.011481e-02   p_joint 5.607407e-03

Joint ci ratio: 9.311842e-02	ci left: 5.996311e-03	ci right 6.585406e-03	k: 1760	n:280000
Cons ci ratio: 7.336627e-02	ci left: 9.722411e-03	ci right 1.046635e-02	k: 2825	n:280000
KS ci ratio: 3.476332e-02	ci left: 4.268365e-02	ci right 4.419724e-02	k: 12162	n:280000
OR5AS1   280000 perm   89 sec   (3138 perm/sec)   p_kst 4.343571e-02   p_cons 1.008929e-02   p_joint 6.285714e-03

Outputting figure to mutsig2_images.part000000000122/OR5AS1.9_977_280000_0.043436_0.010089_0.0062857.png
                gene_name: OR5AS1
               theta_stop: 0.093 
                    nperm: 280000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 25 percent done.
OR51D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 4.840307e-02	ci left: 3.863960e-01	ci right 4.056646e-01	k: 3960	n:10000
OR51D1   10000 perm   2 sec   (5892 perm/sec)   p_kst 3.960000e-01   p_cons 3.120000e-02   p_joint 7.680000e-02

Joint ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
Cons ci ratio: 1.526953e-01	ci left: 2.945960e-02	ci right 3.437773e-02	k: 637	n:20000
KS ci ratio: 3.374776e-02	ci left: 3.959922e-01	ci right 4.096360e-01	k: 8056	n:20000
OR51D1   20000 perm   4 sec   (5223 perm/sec)   p_kst 4.028000e-01   p_cons 3.185000e-02   p_joint 1.095500e-01

Joint ci ratio: 6.958309e-02	ci left: 9.232808e-02	ci right 9.901712e-02	k: 2869	n:30000
Cons ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
KS ci ratio: 2.746438e-02	ci left: 3.988393e-01	ci right 4.099793e-01	k: 12132	n:30000
OR51D1   30000 perm   6 sec   (4962 perm/sec)   p_kst 4.044000e-01   p_cons 3.133333e-02   p_joint 9.563333e-02

Joint ci ratio: 6.523317e-02	ci left: 8.009260e-02	ci right 8.551815e-02	k: 3311	n:40000
Cons ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
KS ci ratio: 2.383591e-02	ci left: 3.985621e-01	ci right 4.082019e-01	k: 16135	n:40000
OR51D1   40000 perm   8 sec   (4790 perm/sec)   p_kst 4.033750e-01   p_cons 2.817500e-02   p_joint 8.277500e-02

Joint ci ratio: 6.771110e-02	ci left: 6.068896e-02	ci right 6.496197e-02	k: 3140	n:50000
Cons ci ratio: 1.036315e-01	ci left: 2.637647e-02	ci right 2.927870e-02	k: 1390	n:50000
KS ci ratio: 2.138604e-02	ci left: 3.975784e-01	ci right 4.061930e-01	k: 20094	n:50000
OR51D1   50000 perm   11 sec   (4664 perm/sec)   p_kst 4.018800e-01   p_cons 2.780000e-02   p_joint 6.280000e-02

Joint ci ratio: 5.466669e-02	ci left: 7.677146e-02	ci right 8.110271e-02	k: 4735	n:60000
Cons ci ratio: 9.495988e-02	ci left: 2.630372e-02	ci right 2.894224e-02	k: 1656	n:60000
KS ci ratio: 1.949429e-02	ci left: 3.986557e-01	ci right 4.065204e-01	k: 24155	n:60000
OR51D1   60000 perm   13 sec   (4540 perm/sec)   p_kst 4.025833e-01   p_cons 2.760000e-02   p_joint 7.891667e-02

Outputting figure to mutsig2_images.part000000000122/OR51D1.8_979_60000_0.40258_0.0276_0.078917.png
                gene_name: OR51D1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 27 percent done.
OR52K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
KS ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
OR52K1   10000 perm   2 sec   (5687 perm/sec)   p_kst 5.658000e-01   p_cons 2.920000e-02   p_joint 7.830000e-02

Joint ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
Cons ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
KS ci ratio: 2.494442e-02	ci left: 5.455766e-01	ci right 5.594082e-01	k: 11050	n:20000
OR52K1   20000 perm   4 sec   (5034 perm/sec)   p_kst 5.525000e-01   p_cons 2.725000e-02   p_joint 1.309000e-01

Joint ci ratio: 6.687233e-02	ci left: 9.931964e-02	ci right 1.062242e-01	k: 3082	n:30000
Cons ci ratio: 1.263217e-01	ci left: 2.913224e-02	ci right 3.309259e-02	k: 932	n:30000
KS ci ratio: 2.039770e-02	ci left: 5.461177e-01	ci right 5.574056e-01	k: 16553	n:30000
OR52K1   30000 perm   6 sec   (4750 perm/sec)   p_kst 5.517667e-01   p_cons 3.106667e-02   p_joint 1.027333e-01

Joint ci ratio: 5.182665e-02	ci left: 1.218727e-01	ci right 1.283818e-01	k: 5004	n:40000
Cons ci ratio: 1.201400e-01	ci left: 2.436542e-02	ci right 2.750392e-02	k: 1036	n:40000
KS ci ratio: 1.672979e-02	ci left: 5.736428e-01	ci right 5.833458e-01	k: 23140	n:40000
OR52K1   40000 perm   9 sec   (4605 perm/sec)   p_kst 5.785000e-01   p_cons 2.590000e-02   p_joint 1.251000e-01

Joint ci ratio: 4.338811e-02	ci left: 1.372866e-01	ci right 1.433952e-01	k: 7016	n:50000
Cons ci ratio: 1.079817e-01	ci left: 2.429164e-02	ci right 2.708379e-02	k: 1283	n:50000
KS ci ratio: 1.494036e-02	ci left: 5.749183e-01	ci right 5.835925e-01	k: 28963	n:50000
OR52K1   50000 perm   11 sec   (4491 perm/sec)   p_kst 5.792600e-01   p_cons 2.566000e-02   p_joint 1.403200e-01

Joint ci ratio: 4.271898e-02	ci left: 1.204315e-01	ci right 1.257050e-01	k: 7383	n:60000
Cons ci ratio: 9.922986e-02	ci left: 2.409068e-02	ci right 2.662218e-02	k: 1520	n:60000
KS ci ratio: 1.364548e-02	ci left: 5.750541e-01	ci right 5.829716e-01	k: 34741	n:60000
OR52K1   60000 perm   14 sec   (4394 perm/sec)   p_kst 5.790167e-01   p_cons 2.533333e-02   p_joint 1.230500e-01

Outputting figure to mutsig2_images.part000000000122/OR52K1.8_949_60000_0.57902_0.025333_0.12305.png
                gene_name: OR52K1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 28 percent done.
OR56A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
OR56A1   10000 perm   2 sec   (5855 perm/sec)   p_kst 1.552000e-01   p_cons 4.856000e-01   p_joint 3.145000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A1.8_961_10000_0.1552_0.4856_0.3145.png
                gene_name: OR56A1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 29 percent done.
OR5B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 1.201360e-02	ci left: 9.085394e-01	ci right 9.196180e-01	k: 9142	n:10000
OR5B3   10000 perm   2 sec   (5612 perm/sec)   p_kst 9.142000e-01   p_cons 5.234000e-01   p_joint 8.137000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B3.8_947_10000_0.9142_0.5234_0.8137.png
                gene_name: OR5B3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
OR4K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
KS ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
OR4K2   10000 perm   2 sec   (5726 perm/sec)   p_kst 8.414000e-01   p_cons 5.592000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4K2.7_949_10000_0.8414_0.5592_1.png
                gene_name: OR4K2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
OR51G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
OR51G1   10000 perm   2 sec   (5896 perm/sec)   p_kst 3.616000e-01   p_cons 6.521000e-01   p_joint 6.367000e-01

Outputting figure to mutsig2_images.part000000000122/OR51G1.7_968_10000_0.3616_0.6521_0.6367.png
                gene_name: OR51G1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 33 percent done.
OR52B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
OR52B4   10000 perm   2 sec   (5604 perm/sec)   p_kst 7.575000e-01   p_cons 1.280000e-01   p_joint 3.998000e-01

Joint ci ratio: 2.962206e-02	ci left: 4.598660e-01	ci right 4.737436e-01	k: 9336	n:20000
Cons ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
KS ci ratio: 1.593493e-02	ci left: 7.455504e-01	ci right 7.575764e-01	k: 15032	n:20000
OR52B4   20000 perm   4 sec   (4976 perm/sec)   p_kst 7.516000e-01   p_cons 1.213500e-01   p_joint 4.668000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B4.7_949_20000_0.7516_0.12135_0.4668.png
                gene_name: OR52B4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 34 percent done.
OR52E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
OR52E2   10000 perm   2 sec   (5516 perm/sec)   p_kst 4.967000e-01   p_cons 5.432000e-01   p_joint 7.100000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E2.7_981_10000_0.4967_0.5432_0.71.png
                gene_name: OR52E2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 35 percent done.
OR52N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
Cons ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
KS ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
OR52N1   10000 perm   2 sec   (5941 perm/sec)   p_kst 8.059000e-01   p_cons 5.349000e-01   p_joint 8.752000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N1.7_966_10000_0.8059_0.5349_0.8752.png
                gene_name: OR52N1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 36 percent done.
OR56A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
Cons ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
KS ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
OR56A4   10000 perm   2 sec   (6363 perm/sec)   p_kst 4.496000e-01   p_cons 1.559000e-01   p_joint 3.148000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A4.7_1100_10000_0.4496_0.1559_0.3148.png
                gene_name: OR56A4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 37 percent done.
OR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
Cons ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
KS ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
OR5A2   10000 perm   2 sec   (6466 perm/sec)   p_kst 2.434000e-01   p_cons 2.598000e-01   p_joint 2.212000e-01

Outputting figure to mutsig2_images.part000000000122/OR5A2.7_977_10000_0.2434_0.2598_0.2212.png
                gene_name: OR5A2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 39 percent done.
OR5B21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
OR5B21   10000 perm   2 sec   (5683 perm/sec)   p_kst 3.359000e-01   p_cons 1   p_joint 4.440000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B21.7_932_10000_0.3359_1_0.444.png
                gene_name: OR5B21
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 40 percent done.
OR51G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
Cons ci ratio: 3.038068e-02	ci left: 6.151246e-01	ci right 6.342027e-01	k: 6247	n:10000
KS ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
OR51G2   10000 perm   2 sec   (5719 perm/sec)   p_kst 9.610000e-02   p_cons 6.247000e-01   p_joint 2.658000e-01

Joint ci ratio: 5.034691e-02	ci left: 2.267093e-01	ci right 2.384685e-01	k: 4651	n:20000
Cons ci ratio: 2.128005e-02	ci left: 6.224122e-01	ci right 6.358502e-01	k: 12583	n:20000
KS ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
OR51G2   20000 perm   4 sec   (5041 perm/sec)   p_kst 9.450000e-02   p_cons 6.291500e-01   p_joint 2.325500e-01

Outputting figure to mutsig2_images.part000000000122/OR51G2.6_949_20000_0.0945_0.62915_0.23255.png
                gene_name: OR51G2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 41 percent done.
OR51I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
Cons ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
OR51I1   10000 perm   2 sec   (5634 perm/sec)   p_kst 1.340000e-02   p_cons 6.150000e-02   p_joint 3.950000e-02

Joint ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
Cons ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
KS ci ratio: 2.297185e-01	ci left: 1.270049e-02	ci right 1.604289e-02	k: 286	n:20000
OR51I1   20000 perm   4 sec   (4951 perm/sec)   p_kst 1.430000e-02   p_cons 6.185000e-02   p_joint 7.350000e-03

Joint ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
Cons ci ratio: 8.858866e-02	ci left: 5.854619e-02	ci right 6.400582e-02	k: 1837	n:30000
KS ci ratio: 1.922644e-01	ci left: 1.235170e-02	ci right 1.501037e-02	k: 409	n:30000
OR51I1   30000 perm   6 sec   (4717 perm/sec)   p_kst 1.363333e-02   p_cons 6.123333e-02   p_joint 1.120000e-02

Joint ci ratio: 1.873585e-01	ci left: 9.810223e-03	ci right 1.186172e-02	k: 432	n:40000
Cons ci ratio: 7.638331e-02	ci left: 5.941055e-02	ci right 6.415331e-02	k: 2470	n:40000
KS ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
OR51I1   40000 perm   9 sec   (4560 perm/sec)   p_kst 1.347500e-02   p_cons 6.175000e-02   p_joint 1.080000e-02

Joint ci ratio: 1.807405e-01	ci left: 8.477237e-03	ci right 1.018046e-02	k: 465	n:50000
Cons ci ratio: 7.284848e-02	ci left: 5.274239e-02	ci right 5.674950e-02	k: 2736	n:50000
KS ci ratio: 1.531093e-01	ci left: 1.194850e-02	ci right 1.394864e-02	k: 646	n:50000
OR51I1   50000 perm   11 sec   (4408 perm/sec)   p_kst 1.292000e-02   p_cons 5.472000e-02   p_joint 9.300000e-03

Joint ci ratio: 1.791471e-01	ci left: 7.207175e-03	ci right 8.641037e-03	k: 474	n:60000
Cons ci ratio: 6.418124e-02	ci left: 5.665162e-02	ci right 6.042455e-02	k: 3511	n:60000
KS ci ratio: 1.398057e-01	ci left: 1.202846e-02	ci right 1.385244e-02	k: 775	n:60000
OR51I1   60000 perm   14 sec   (4321 perm/sec)   p_kst 1.291667e-02   p_cons 5.851667e-02   p_joint 7.900000e-03

Joint ci ratio: 1.766470e-01	ci left: 6.368423e-03	ci right 7.615827e-03	k: 488	n:70000
Cons ci ratio: 5.926941e-02	ci left: 5.706845e-02	ci right 6.056823e-02	k: 4116	n:70000
KS ci ratio: 1.275453e-01	ci left: 1.246445e-02	ci right 1.417625e-02	k: 931	n:70000
OR51I1   70000 perm   17 sec   (4241 perm/sec)   p_kst 1.330000e-02   p_cons 5.880000e-02   p_joint 6.971429e-03

Joint ci ratio: 1.531282e-01	ci left: 7.502539e-03	ci right 8.758525e-03	k: 649	n:80000
Cons ci ratio: 5.539862e-02	ci left: 5.726596e-02	ci right 6.054112e-02	k: 4711	n:80000
KS ci ratio: 1.193727e-01	ci left: 1.250549e-02	ci right 1.410510e-02	k: 1063	n:80000
OR51I1   80000 perm   19 sec   (4166 perm/sec)   p_kst 1.328750e-02   p_cons 5.888750e-02   p_joint 8.112500e-03

Joint ci ratio: 1.607161e-01	ci left: 6.038720e-03	ci right 7.104569e-03	k: 590	n:90000
Cons ci ratio: 5.206877e-02	ci left: 5.769977e-02	ci right 6.079538e-02	k: 5331	n:90000
KS ci ratio: 1.126890e-01	ci left: 1.251853e-02	ci right 1.402419e-02	k: 1193	n:90000
OR51I1   90000 perm   22 sec   (4083 perm/sec)   p_kst 1.325556e-02   p_cons 5.923333e-02   p_joint 6.555556e-03

Joint ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
Cons ci ratio: 5.234666e-02	ci left: 5.170832e-02	ci right 5.449768e-02	k: 5309	n:100000
KS ci ratio: 1.067297e-01	ci left: 1.259913e-02	ci right 1.402931e-02	k: 1330	n:100000
OR51I1   100000 perm   25 sec   (4008 perm/sec)   p_kst 1.330000e-02   p_cons 5.309000e-02   p_joint 1.038000e-02

Joint ci ratio: 9.336457e-02	ci left: 1.503579e-02	ci right 1.651717e-02	k: 1734	n:110000
Cons ci ratio: 4.982956e-02	ci left: 5.193487e-02	ci right 5.459784e-02	k: 5858	n:110000
KS ci ratio: 1.015907e-01	ci left: 1.267565e-02	ci right 1.404109e-02	k: 1468	n:110000
OR51I1   110000 perm   28 sec   (3941 perm/sec)   p_kst 1.334545e-02   p_cons 5.325455e-02   p_joint 1.576364e-02

Joint ci ratio: 8.996446e-02	ci left: 1.487382e-02	ci right 1.628306e-02	k: 1868	n:120000
Cons ci ratio: 4.767132e-02	ci left: 5.206865e-02	ci right 5.461966e-02	k: 6400	n:120000
KS ci ratio: 9.790374e-02	ci left: 1.253748e-02	ci right 1.383620e-02	k: 1581	n:120000
OR51I1   120000 perm   31 sec   (3878 perm/sec)   p_kst 1.317500e-02   p_cons 5.333333e-02   p_joint 1.556667e-02

Outputting figure to mutsig2_images.part000000000122/OR51I1.6_949_120000_0.013175_0.053333_0.015567.png
                gene_name: OR51I1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 42 percent done.
OR51L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
Cons ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
OR51L1   10000 perm   2 sec   (5598 perm/sec)   p_kst 1.542000e-01   p_cons 2.832000e-01   p_joint 2.417000e-01

Outputting figure to mutsig2_images.part000000000122/OR51L1.6_950_10000_0.1542_0.2832_0.2417.png
                gene_name: OR51L1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 43 percent done.
OR52A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
KS ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
OR52A4   10000 perm   2 sec   (5250 perm/sec)   p_kst 2.932000e-01   p_cons 4.014000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000122/OR52A4.6_919_10000_0.2932_0.4014_0.3929.png
                gene_name: OR52A4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 45 percent done.
OR52A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
Cons ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
KS ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
OR52A5   10000 perm   2 sec   (5885 perm/sec)   p_kst 6.060000e-01   p_cons 4.218000e-01   p_joint 7.529000e-01

Outputting figure to mutsig2_images.part000000000122/OR52A5.6_954_10000_0.606_0.4218_0.7529.png
                gene_name: OR52A5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 46 percent done.
OR52J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
Cons ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
KS ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
OR52J3   10000 perm   2 sec   (6107 perm/sec)   p_kst 1.782000e-01   p_cons 2.882000e-01   p_joint 2.299000e-01

Outputting figure to mutsig2_images.part000000000122/OR52J3.6_931_10000_0.1782_0.2882_0.2299.png
                gene_name: OR52J3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 47 percent done.
OR52N5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
Cons ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
KS ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
OR52N5   10000 perm   2 sec   (5670 perm/sec)   p_kst 2.143000e-01   p_cons 4.821000e-01   p_joint 3.340000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N5.6_979_10000_0.2143_0.4821_0.334.png
                gene_name: OR52N5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
OR56B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
Cons ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
KS ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
OR56B4   10000 perm   2 sec   (6027 perm/sec)   p_kst 7.534000e-01   p_cons 4.890000e-02   p_joint 2.406000e-01

Joint ci ratio: 5.763387e-02	ci left: 1.824080e-01	ci right 1.932829e-01	k: 3756	n:20000
Cons ci ratio: 1.196902e-01	ci left: 4.784576e-02	ci right 5.398563e-02	k: 1017	n:20000
KS ci ratio: 1.560633e-02	ci left: 7.533127e-01	ci right 7.652118e-01	k: 15186	n:20000
OR56B4   20000 perm   4 sec   (5261 perm/sec)   p_kst 7.593000e-01   p_cons 5.085000e-02   p_joint 1.878000e-01

Joint ci ratio: 5.266169e-02	ci left: 1.517789e-01	ci right 1.600212e-01	k: 4676	n:30000
Cons ci ratio: 9.847705e-02	ci left: 4.769098e-02	ci right 5.266326e-02	k: 1504	n:30000
KS ci ratio: 1.222838e-02	ci left: 7.692578e-01	ci right 7.787558e-01	k: 23221	n:30000
OR56B4   30000 perm   6 sec   (4984 perm/sec)   p_kst 7.740333e-01   p_cons 5.013333e-02   p_joint 1.558667e-01

Outputting figure to mutsig2_images.part000000000122/OR56B4.6_962_30000_0.77403_0.050133_0.15587.png
                gene_name: OR56B4
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 49 percent done.
OR5AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
Cons ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
KS ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
OR5AP2   10000 perm   2 sec   (5546 perm/sec)   p_kst 6.557000e-01   p_cons 2.638000e-01   p_joint 5.004000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AP2.6_955_10000_0.6557_0.2638_0.5004.png
                gene_name: OR5AP2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 51 percent done.
OR5B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
Cons ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
KS ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
OR5B2   10000 perm   2 sec   (6029 perm/sec)   p_kst 8.110000e-01   p_cons 1.155000e-01   p_joint 3.613000e-01

Joint ci ratio: 3.797422e-02	ci left: 3.409480e-01	ci right 3.541964e-01	k: 6951	n:20000
Cons ci ratio: 7.531074e-02	ci left: 1.147891e-01	ci right 1.238219e-01	k: 2385	n:20000
KS ci ratio: 1.434299e-02	ci left: 7.830765e-01	ci right 7.944394e-01	k: 15776	n:20000
OR5B2   20000 perm   4 sec   (5321 perm/sec)   p_kst 7.888000e-01   p_cons 1.192500e-01   p_joint 3.475500e-01

Outputting figure to mutsig2_images.part000000000122/OR5B2.6_934_20000_0.7888_0.11925_0.34755.png
                gene_name: OR5B2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 52 percent done.
OR5D18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
Cons ci ratio: 4.068000e-02	ci left: 4.715636e-01	ci right 4.912473e-01	k: 4814	n:10000
KS ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
OR5D18   10000 perm   2 sec   (6369 perm/sec)   p_kst 6.401000e-01   p_cons 4.814000e-01   p_joint 6.888000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D18.6_945_10000_0.6401_0.4814_0.6888.png
                gene_name: OR5D18
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 53 percent done.
OR5H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
Cons ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
OR5H1   10000 perm   2 sec   (5778 perm/sec)   p_kst 1.235000e-01   p_cons 8.890000e-02   p_joint 7.980000e-02

Joint ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
Cons ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
KS ci ratio: 7.290257e-02	ci left: 1.216766e-01	ci right 1.309324e-01	k: 2525	n:20000
OR5H1   20000 perm   4 sec   (5092 perm/sec)   p_kst 1.262500e-01   p_cons 8.300000e-02   p_joint 7.210000e-02

Outputting figure to mutsig2_images.part000000000122/OR5H1.6_944_20000_0.12625_0.083_0.0721.png
                gene_name: OR5H1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 54 percent done.
OR5H15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
KS ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
OR5H15   10000 perm   2 sec   (5659 perm/sec)   p_kst 9.396000e-01   p_cons 9.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5H15.6_944_10000_0.9396_0.975_1.png
                gene_name: OR5H15
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
OR4N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
KS ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
OR4N4   10000 perm   2 sec   (5625 perm/sec)   p_kst 8.543000e-01   p_cons 9.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4N4.5_954_10000_0.8543_0.9386_1.png
                gene_name: OR4N4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
OR51A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 2.351896e-02	ci left: 7.265354e-01	ci right 7.439273e-01	k: 7353	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
OR51A4   10000 perm   2 sec   (5960 perm/sec)   p_kst 3.150000e-02   p_cons 7.353000e-01   p_joint 1.163000e-01

Joint ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
Cons ci ratio: 1.672892e-02	ci left: 7.268103e-01	ci right 7.391219e-01	k: 14660	n:20000
KS ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
OR51A4   20000 perm   4 sec   (5294 perm/sec)   p_kst 3.230000e-02   p_cons 7.330000e-01   p_joint 1.056500e-01

Joint ci ratio: 6.315603e-02	ci left: 1.101944e-01	ci right 1.174139e-01	k: 3413	n:30000
Cons ci ratio: 1.419045e-02	ci left: 7.126695e-01	ci right 7.228883e-01	k: 21534	n:30000
KS ci ratio: 1.238102e-01	ci left: 3.032813e-02	ci right 3.436310e-02	k: 969	n:30000
OR51A4   30000 perm   6 sec   (5016 perm/sec)   p_kst 3.230000e-02   p_cons 7.178000e-01   p_joint 1.137667e-01

Joint ci ratio: 6.031904e-02	ci left: 9.261206e-02	ci right 9.839681e-02	k: 3819	n:40000
Cons ci ratio: 1.227872e-02	ci left: 7.137128e-01	ci right 7.225555e-01	k: 28726	n:40000
KS ci ratio: 1.091269e-01	ci left: 2.954216e-02	ci right 3.297633e-02	k: 1249	n:40000
OR51A4   40000 perm   8 sec   (4851 perm/sec)   p_kst 3.122500e-02   p_cons 7.181500e-01   p_joint 9.547500e-02

Joint ci ratio: 5.950587e-02	ci left: 7.747867e-02	ci right 8.225025e-02	k: 3992	n:50000
Cons ci ratio: 1.062203e-02	ci left: 7.275519e-01	ci right 7.353412e-01	k: 36573	n:50000
KS ci ratio: 9.867060e-02	ci left: 2.908813e-02	ci right 3.212669e-02	k: 1529	n:50000
OR51A4   50000 perm   11 sec   (4713 perm/sec)   p_kst 3.058000e-02   p_cons 7.314600e-01   p_joint 7.984000e-02

Outputting figure to mutsig2_images.part000000000122/OR51A4.5_944_50000_0.03058_0.73146_0.07984.png
                gene_name: OR51A4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 58 percent done.
OR51B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
Cons ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
OR51B5   10000 perm   2 sec   (5802 perm/sec)   p_kst 7.030000e-01   p_cons 3.272000e-01   p_joint 6.952000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B5.5_943_10000_0.703_0.3272_0.6952.png
                gene_name: OR51B5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 59 percent done.
OR51F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
Cons ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
KS ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
OR51F1   10000 perm   2 sec   (6407 perm/sec)   p_kst 9.111000e-01   p_cons 2.113000e-01   p_joint 6.198000e-01

Outputting figure to mutsig2_images.part000000000122/OR51F1.5_942_10000_0.9111_0.2113_0.6198.png
                gene_name: OR51F1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 60 percent done.
OR51I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
Cons ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
KS ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
OR51I2   10000 perm   2 sec   (5898 perm/sec)   p_kst 9.050000e-02   p_cons 4.042000e-01   p_joint 1.976000e-01

Joint ci ratio: 5.403010e-02	ci left: 2.026897e-01	ci right 2.139953e-01	k: 4166	n:20000
Cons ci ratio: 3.366024e-02	ci left: 3.972386e-01	ci right 4.108893e-01	k: 8081	n:20000
KS ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
OR51I2   20000 perm   4 sec   (5227 perm/sec)   p_kst 8.995000e-02   p_cons 4.040500e-01   p_joint 2.083000e-01

Outputting figure to mutsig2_images.part000000000122/OR51I2.5_943_20000_0.08995_0.40405_0.2083.png
                gene_name: OR51I2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
OR51Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
KS ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
OR51Q1   10000 perm   2 sec   (5998 perm/sec)   p_kst 9.180000e-01   p_cons 7.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51Q1.5_958_10000_0.918_0.7189_1.png
                gene_name: OR51Q1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
OR51S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
Cons ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
OR51S1   10000 perm   2 sec   (5662 perm/sec)   p_kst 2.732000e-01   p_cons 1.373000e-01   p_joint 2.604000e-01

Outputting figure to mutsig2_images.part000000000122/OR51S1.5_975_10000_0.2732_0.1373_0.2604.png
                gene_name: OR51S1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 64 percent done.
OR52M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
OR52M1   10000 perm   2 sec   (6057 perm/sec)   p_kst 9.267000e-01   p_cons 6.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52M1.5_957_10000_0.9267_0.6173_1.png
                gene_name: OR52M1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
OR56B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 4.273097e-02	ci left: 4.471004e-01	ci right 4.667247e-01	k: 4569	n:10000
KS ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
OR56B1   10000 perm   2 sec   (5927 perm/sec)   p_kst 1.438000e-01   p_cons 4.569000e-01   p_joint 2.877000e-01

Outputting figure to mutsig2_images.part000000000122/OR56B1.5_979_10000_0.1438_0.4569_0.2877.png
                gene_name: OR56B1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 66 percent done.
OR5AN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
OR5AN1   10000 perm   2 sec   (6030 perm/sec)   p_kst 7.576000e-01   p_cons 7.081000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5AN1.5_939_10000_0.7576_0.7081_1.png
                gene_name: OR5AN1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
OR5H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
OR5H14   10000 perm   2 sec   (5746 perm/sec)   p_kst 3.670000e-01   p_cons 4.525000e-01   p_joint 4.064000e-01

Outputting figure to mutsig2_images.part000000000122/OR5H14.5_937_10000_0.367_0.4525_0.4064.png
                gene_name: OR5H14
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 69 percent done.
OR4S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
Cons ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
KS ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
OR4S1   10000 perm   2 sec   (6132 perm/sec)   p_kst 1.472000e-01   p_cons 8.343000e-01   p_joint 3.270000e-01

Outputting figure to mutsig2_images.part000000000122/OR4S1.4_933_10000_0.1472_0.8343_0.327.png
                gene_name: OR4S1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 70 percent done.
OR4X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
Cons ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
OR4X1   10000 perm   2 sec   (6093 perm/sec)   p_kst 1.302000e-01   p_cons 1.967000e-01   p_joint 1.121000e-01

Joint ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
Cons ci ratio: 5.797613e-02	ci left: 1.806283e-01	ci right 1.914631e-01	k: 3720	n:20000
KS ci ratio: 7.178468e-02	ci left: 1.250728e-01	ci right 1.344351e-01	k: 2594	n:20000
OR4X1   20000 perm   4 sec   (5326 perm/sec)   p_kst 1.297000e-01   p_cons 1.860000e-01   p_joint 1.115000e-01

Outputting figure to mutsig2_images.part000000000122/OR4X1.4_921_20000_0.1297_0.186_0.1115.png
                gene_name: OR4X1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 71 percent done.
OR51B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
Cons ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
KS ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
OR51B2   10000 perm   2 sec   (6115 perm/sec)   p_kst 1.649000e-01   p_cons 4.326000e-01   p_joint 2.943000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B2.4_943_10000_0.1649_0.4326_0.2943.png
                gene_name: OR51B2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 72 percent done.
OR51E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
Cons ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
OR51E2   10000 perm   2 sec   (6069 perm/sec)   p_kst 6.129000e-01   p_cons 6.788000e-01   p_joint 8.381000e-01

Outputting figure to mutsig2_images.part000000000122/OR51E2.4_967_10000_0.6129_0.6788_0.8381.png
                gene_name: OR51E2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 73 percent done.
OR51M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
Cons ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
KS ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
OR51M1   10000 perm   2 sec   (5832 perm/sec)   p_kst 1.790000e-01   p_cons 6.744000e-01   p_joint 3.578000e-01

Outputting figure to mutsig2_images.part000000000122/OR51M1.4_985_10000_0.179_0.6744_0.3578.png
                gene_name: OR51M1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
OR52B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
Cons ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
KS ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
OR52B2   10000 perm   2 sec   (5883 perm/sec)   p_kst 6.011000e-01   p_cons 4.745000e-01   p_joint 7.372000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B2.4_975_10000_0.6011_0.4745_0.7372.png
                gene_name: OR52B2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 76 percent done.
OR52B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
OR52B6   10000 perm   2 sec   (6084 perm/sec)   p_kst 7.744000e-01   p_cons 1.190000e-02   p_joint 1.115000e-01

Joint ci ratio: 1.276157e-01	ci left: 4.216829e-02	ci right 4.796490e-02	k: 900	n:20000
Cons ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
KS ci ratio: 1.481319e-02	ci left: 7.720237e-01	ci right 7.835954e-01	k: 15557	n:20000
OR52B6   20000 perm   4 sec   (5371 perm/sec)   p_kst 7.778500e-01   p_cons 1.165000e-02   p_joint 4.500000e-02

Joint ci ratio: 1.144993e-01	ci left: 3.544322e-02	ci right 3.978025e-02	k: 1127	n:30000
Cons ci ratio: 2.204090e-01	ci left: 9.282959e-03	ci right 1.161331e-02	k: 312	n:30000
KS ci ratio: 1.208732e-02	ci left: 7.733209e-01	ci right 7.827585e-01	k: 23342	n:30000
OR52B6   30000 perm   6 sec   (5086 perm/sec)   p_kst 7.780667e-01   p_cons 1.040000e-02   p_joint 3.756667e-02

Joint ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
Cons ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
KS ci ratio: 9.865121e-03	ci left: 7.939055e-01	ci right 8.018012e-01	k: 31915	n:40000
OR52B6   40000 perm   8 sec   (4899 perm/sec)   p_kst 7.978750e-01   p_cons 1.067500e-02   p_joint 4.765000e-02

Joint ci ratio: 9.030058e-02	ci left: 3.467756e-02	ci right 3.797656e-02	k: 1815	n:50000
Cons ci ratio: 1.693674e-01	ci left: 9.701701e-03	ci right 1.151579e-02	k: 529	n:50000
KS ci ratio: 8.850827e-03	ci left: 7.933264e-01	ci right 8.003991e-01	k: 39844	n:50000
OR52B6   50000 perm   11 sec   (4760 perm/sec)   p_kst 7.968800e-01   p_cons 1.058000e-02   p_joint 3.630000e-02

Joint ci ratio: 8.560596e-02	ci left: 3.231930e-02	ci right 3.522602e-02	k: 2025	n:60000
Cons ci ratio: 1.530378e-01	ci left: 9.988355e-03	ci right 1.165947e-02	k: 648	n:60000
KS ci ratio: 8.065426e-03	ci left: 7.942115e-01	ci right 8.006597e-01	k: 47847	n:60000
OR52B6   60000 perm   13 sec   (4646 perm/sec)   p_kst 7.974500e-01   p_cons 1.080000e-02   p_joint 3.375000e-02

Joint ci ratio: 7.270562e-02	ci left: 3.841993e-02	ci right 4.133266e-02	k: 2790	n:70000
Cons ci ratio: 1.418910e-01	ci left: 1.001993e-02	ci right 1.156388e-02	k: 754	n:70000
KS ci ratio: 7.493039e-03	ci left: 7.933258e-01	ci right 7.993068e-01	k: 55743	n:70000
OR52B6   70000 perm   15 sec   (4541 perm/sec)   p_kst 7.963286e-01   p_cons 1.077143e-02   p_joint 3.985714e-02

Joint ci ratio: 7.281308e-02	ci left: 3.368801e-02	ci right 3.624586e-02	k: 2796	n:80000
Cons ci ratio: 1.314891e-01	ci left: 1.026457e-02	ci right 1.172122e-02	k: 878	n:80000
KS ci ratio: 7.023751e-03	ci left: 7.928389e-01	ci right 7.984397e-01	k: 63652	n:80000
OR52B6   80000 perm   18 sec   (4447 perm/sec)   p_kst 7.956500e-01   p_cons 1.097500e-02   p_joint 3.495000e-02

Joint ci ratio: 6.028044e-02	ci left: 4.352335e-02	ci right 4.623942e-02	k: 4038	n:90000
Cons ci ratio: 1.237716e-01	ci left: 1.033958e-02	ci right 1.171443e-02	k: 991	n:90000
KS ci ratio: 6.630989e-03	ci left: 7.925596e-01	ci right 7.978436e-01	k: 71569	n:90000
OR52B6   90000 perm   21 sec   (4365 perm/sec)   p_kst 7.952111e-01   p_cons 1.101111e-02   p_joint 4.486667e-02

Joint ci ratio: 5.491168e-02	ci left: 4.715693e-02	ci right 4.982934e-02	k: 4848	n:100000
Cons ci ratio: 1.174860e-01	ci left: 1.036275e-02	ci right 1.166584e-02	k: 1100	n:100000
KS ci ratio: 6.283967e-03	ci left: 7.930469e-01	ci right 7.980560e-01	k: 79556	n:100000
OR52B6   100000 perm   23 sec   (4282 perm/sec)   p_kst 7.955600e-01   p_cons 1.100000e-02   p_joint 4.848000e-02

Joint ci ratio: 5.635859e-02	ci left: 4.093874e-02	ci right 4.332184e-02	k: 4633	n:110000
Cons ci ratio: 1.076998e-01	ci left: 1.125869e-02	ci right 1.254905e-02	k: 1308	n:110000
KS ci ratio: 6.006023e-03	ci left: 7.923738e-01	ci right 7.971561e-01	k: 87425	n:110000
OR52B6   110000 perm   26 sec   (4202 perm/sec)   p_kst 7.947727e-01   p_cons 1.189091e-02   p_joint 4.211818e-02

Joint ci ratio: 5.222138e-02	ci left: 4.367757e-02	ci right 4.602783e-02	k: 5381	n:120000
Cons ci ratio: 1.028599e-01	ci left: 1.134285e-02	ci right 1.258090e-02	k: 1434	n:120000
KS ci ratio: 5.741179e-03	ci left: 7.929975e-01	ci right 7.975716e-01	k: 95435	n:120000
OR52B6   120000 perm   29 sec   (4124 perm/sec)   p_kst 7.952917e-01   p_cons 1.195000e-02   p_joint 4.484167e-02

Joint ci ratio: 6.023160e-02	ci left: 3.060262e-02	ci right 3.251065e-02	k: 4101	n:130000
Cons ci ratio: 9.858686e-02	ci left: 1.142267e-02	ci right 1.261463e-02	k: 1561	n:130000
KS ci ratio: 5.509940e-03	ci left: 7.934438e-01	ci right 7.978353e-01	k: 103434	n:130000
OR52B6   130000 perm   32 sec   (4046 perm/sec)   p_kst 7.956462e-01   p_cons 1.200769e-02   p_joint 3.154615e-02

Outputting figure to mutsig2_images.part000000000122/OR52B6.4_1010_130000_0.79565_0.012008_0.031546.png
                gene_name: OR52B6
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 77 percent done.
OR52K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
KS ci ratio: 9.085047e-03	ci left: 9.446095e-01	ci right 9.533266e-01	k: 9491	n:10000
OR52K2   10000 perm   2 sec   (6044 perm/sec)   p_kst 9.491000e-01   p_cons 7.348000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52K2.4_949_10000_0.9491_0.7348_1.png
                gene_name: OR52K2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
OR52L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
Cons ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
KS ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
OR52L1   10000 perm   2 sec   (5828 perm/sec)   p_kst 8.723000e-01   p_cons 1.837000e-01   p_joint 4.239000e-01

Outputting figure to mutsig2_images.part000000000122/OR52L1.4_994_10000_0.8723_0.1837_0.4239.png
                gene_name: OR52L1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 80 percent done.
OR52N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
Cons ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
KS ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
OR52N2   10000 perm   2 sec   (6345 perm/sec)   p_kst 8.030000e-01   p_cons 2.589000e-01   p_joint 6.466000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N2.4_969_10000_0.803_0.2589_0.6466.png
                gene_name: OR52N2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 81 percent done.
OR52N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
Cons ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
OR52N4   10000 perm   2 sec   (6506 perm/sec)   p_kst 7.871000e-01   p_cons 2.462000e-01   p_joint 6.398000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N4.4_970_10000_0.7871_0.2462_0.6398.png
                gene_name: OR52N4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 82 percent done.
OR5AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
Cons ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
KS ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
OR5AR1   10000 perm   2 sec   (6437 perm/sec)   p_kst 6.150000e-02   p_cons 3.963000e-01   p_joint 1.467000e-01

Joint ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
Cons ci ratio: 3.288641e-02	ci left: 4.084584e-01	ci right 4.221663e-01	k: 8306	n:20000
KS ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
OR5AR1   20000 perm   4 sec   (5661 perm/sec)   p_kst 7.055000e-02   p_cons 4.153000e-01   p_joint 1.162500e-01

Joint ci ratio: 5.231756e-02	ci left: 1.534935e-01	ci right 1.617729e-01	k: 4728	n:30000
Cons ci ratio: 2.693557e-02	ci left: 4.082187e-01	ci right 4.193980e-01	k: 12414	n:30000
KS ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
OR5AR1   30000 perm   6 sec   (5336 perm/sec)   p_kst 7.133333e-02   p_cons 4.138000e-01   p_joint 1.576000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AR1.4_935_30000_0.071333_0.4138_0.1576.png
                gene_name: OR5AR1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 83 percent done.
OR5B17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
Cons ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
KS ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
OR5B17   10000 perm   2 sec   (5980 perm/sec)   p_kst 3.552000e-01   p_cons 2.216000e-01   p_joint 3.564000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B17.4_947_10000_0.3552_0.2216_0.3564.png
                gene_name: OR5B17
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 84 percent done.
OR4X2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
OR4X2   10000 perm   2 sec   (6287 perm/sec)   p_kst 5.615000e-01   p_cons 3.740000e-02   p_joint 9.950000e-02

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 1.416066e-01	ci left: 3.428157e-02	ci right 3.955417e-02	k: 737	n:20000
KS ci ratio: 2.477339e-02	ci left: 5.489812e-01	ci right 5.628025e-01	k: 11118	n:20000
OR4X2   20000 perm   4 sec   (5598 perm/sec)   p_kst 5.559000e-01   p_cons 3.685000e-02   p_joint 1.212000e-01

Joint ci ratio: 7.412713e-02	ci left: 8.209723e-02	ci right 8.845003e-02	k: 2557	n:30000
Cons ci ratio: 1.160583e-01	ci left: 3.450344e-02	ci right 3.878689e-02	k: 1098	n:30000
KS ci ratio: 2.013649e-02	ci left: 5.524917e-01	ci right 5.637637e-01	k: 16744	n:30000
OR4X2   30000 perm   6 sec   (5277 perm/sec)   p_kst 5.581333e-01   p_cons 3.660000e-02   p_joint 8.523333e-02

Joint ci ratio: 6.398790e-02	ci left: 8.302374e-02	ci right 8.853656e-02	k: 3430	n:40000
Cons ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
KS ci ratio: 1.748520e-02	ci left: 5.519404e-01	ci right 5.617014e-01	k: 22273	n:40000
OR4X2   40000 perm   8 sec   (5134 perm/sec)   p_kst 5.568250e-01   p_cons 3.987500e-02   p_joint 8.575000e-02

Outputting figure to mutsig2_images.part000000000122/OR4X2.3_916_40000_0.55683_0.039875_0.08575.png
                gene_name: OR4X2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 86 percent done.
OR51A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
Cons ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
OR51A2   10000 perm   2 sec   (6651 perm/sec)   p_kst 3.630000e-01   p_cons 9.569000e-01   p_joint 6.430000e-01

Outputting figure to mutsig2_images.part000000000122/OR51A2.3_944_10000_0.363_0.9569_0.643.png
                gene_name: OR51A2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 87 percent done.
OR51B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
Cons ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
OR51B4   10000 perm   2 sec   (6351 perm/sec)   p_kst 5.662000e-01   p_cons 3.786000e-01   p_joint 6.076000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B4.3_936_10000_0.5662_0.3786_0.6076.png
                gene_name: OR51B4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 88 percent done.
OR51B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
OR51B6   10000 perm   2 sec   (6381 perm/sec)   p_kst 7.861000e-01   p_cons 9.502000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51B6.3_942_10000_0.7861_0.9502_1.png
                gene_name: OR51B6
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
OR51E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
Cons ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
OR51E1   10000 perm   2 sec   (6300 perm/sec)   p_kst 1.950000e-02   p_cons 8.774000e-01   p_joint 9.470000e-02

Joint ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
Cons ci ratio: 1.053025e-02	ci left: 8.692199e-01	ci right 8.784711e-01	k: 17478	n:20000
KS ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
OR51E1   20000 perm   4 sec   (5514 perm/sec)   p_kst 2.115000e-02   p_cons 8.739000e-01   p_joint 1.033000e-01

Joint ci ratio: 7.404804e-02	ci left: 8.226108e-02	ci right 8.861948e-02	k: 2562	n:30000
Cons ci ratio: 8.527301e-03	ci left: 8.719136e-01	ci right 8.794135e-01	k: 26271	n:30000
KS ci ratio: 1.535327e-01	ci left: 1.963185e-02	ci right 2.292844e-02	k: 637	n:30000
OR51E1   30000 perm   6 sec   (5234 perm/sec)   p_kst 2.123333e-02   p_cons 8.757000e-01   p_joint 8.540000e-02

Joint ci ratio: 5.954659e-02	ci left: 9.483179e-02	ci right 1.006768e-01	k: 3909	n:40000
Cons ci ratio: 7.346534e-03	ci left: 8.735645e-01	ci right 8.800307e-01	k: 35073	n:40000
KS ci ratio: 1.336611e-01	ci left: 1.964140e-02	ci right 2.247873e-02	k: 841	n:40000
OR51E1   40000 perm   8 sec   (5054 perm/sec)   p_kst 2.102500e-02   p_cons 8.768250e-01   p_joint 9.772500e-02

Joint ci ratio: 4.858887e-02	ci left: 1.123744e-01	ci right 1.179904e-01	k: 5758	n:50000
Cons ci ratio: 6.572851e-03	ci left: 8.738469e-01	ci right 8.796293e-01	k: 43838	n:50000
KS ci ratio: 1.196957e-01	ci left: 1.974166e-02	ci right 2.227438e-02	k: 1049	n:50000
OR51E1   50000 perm   10 sec   (4911 perm/sec)   p_kst 2.098000e-02   p_cons 8.767600e-01   p_joint 1.151600e-01

Joint ci ratio: 5.279498e-02	ci left: 8.192403e-02	ci right 8.638296e-02	k: 5048	n:60000
Cons ci ratio: 5.991145e-03	ci left: 8.744295e-01	ci right 8.797006e-01	k: 52625	n:60000
KS ci ratio: 1.098022e-01	ci left: 1.965674e-02	ci right 2.195660e-02	k: 1247	n:60000
OR51E1   60000 perm   13 sec   (4784 perm/sec)   p_kst 2.078333e-02   p_cons 8.770833e-01   p_joint 8.413333e-02

Joint ci ratio: 5.446568e-02	ci left: 6.702033e-02	ci right 7.078693e-02	k: 4822	n:70000
Cons ci ratio: 5.823621e-03	ci left: 8.636413e-01	ci right 8.686997e-01	k: 60633	n:70000
KS ci ratio: 1.020155e-01	ci left: 1.960231e-02	ci right 2.172340e-02	k: 1445	n:70000
OR51E1   70000 perm   15 sec   (4666 perm/sec)   p_kst 2.064286e-02   p_cons 8.661857e-01   p_joint 6.888571e-02

Joint ci ratio: 5.707129e-02	ci left: 5.409599e-02	ci right 5.728632e-02	k: 4454	n:80000
Cons ci ratio: 5.424213e-03	ci left: 8.648037e-01	ci right 8.695197e-01	k: 69374	n:80000
KS ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
OR51E1   80000 perm   18 sec   (4563 perm/sec)   p_kst 2.043750e-02   p_cons 8.671750e-01   p_joint 5.567500e-02

Outputting figure to mutsig2_images.part000000000122/OR51E1.3_961_80000_0.020438_0.86718_0.055675.png
                gene_name: OR51E1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 90 percent done.
OR52E8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
Cons ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
KS ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
OR52E8   10000 perm   2 sec   (6644 perm/sec)   p_kst 4.878000e-01   p_cons 7.207000e-01   p_joint 8.455000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E8.3_956_10000_0.4878_0.7207_0.8455.png
                gene_name: OR52E8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 92 percent done.
OR56A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
OR56A5   10000 perm   2 sec   (6401 perm/sec)   p_kst 3.196000e-01   p_cons 8.860000e-02   p_joint 1.585000e-01

Joint ci ratio: 5.271434e-02	ci left: 2.108581e-01	ci right 2.223244e-01	k: 4331	n:20000
Cons ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
KS ci ratio: 4.091789e-02	ci left: 3.080674e-01	ci right 3.209866e-01	k: 6290	n:20000
OR56A5   20000 perm   4 sec   (5578 perm/sec)   p_kst 3.145000e-01   p_cons 9.105000e-02   p_joint 2.165500e-01

Outputting figure to mutsig2_images.part000000000122/OR56A5.3_944_20000_0.3145_0.09105_0.21655.png
                gene_name: OR56A5
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 93 percent done.
OR5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
KS ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
OR5A1   10000 perm   1 sec   (6720 perm/sec)   p_kst 8.580000e-01   p_cons 5.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5A1.3_952_10000_0.858_0.5122_1.png
                gene_name: OR5A1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
OR5AC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
Cons ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
KS ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
OR5AC2   10000 perm   2 sec   (6666 perm/sec)   p_kst 4.170000e-02   p_cons 2.045000e-01   p_joint 1.065000e-01

Joint ci ratio: 1.592602e-01	ci left: 2.705441e-02	ci right 3.178372e-02	k: 587	n:20000
Cons ci ratio: 5.543648e-02	ci left: 1.944258e-01	ci right 2.055615e-01	k: 3999	n:20000
KS ci ratio: 1.306830e-01	ci left: 4.023021e-02	ci right 4.590360e-02	k: 860	n:20000
OR5AC2   20000 perm   3 sec   (5755 perm/sec)   p_kst 4.300000e-02   p_cons 1.999500e-01   p_joint 2.935000e-02

Joint ci ratio: 1.047476e-01	ci left: 4.225917e-02	ci right 4.696287e-02	k: 1337	n:30000
Cons ci ratio: 4.524974e-02	ci left: 1.955523e-01	ci right 2.046392e-01	k: 6002	n:30000
KS ci ratio: 1.062525e-01	ci left: 4.108949e-02	ci right 4.573279e-02	k: 1301	n:30000
OR5AC2   30000 perm   6 sec   (5430 perm/sec)   p_kst 4.336667e-02   p_cons 2.000667e-01   p_joint 4.456667e-02

Joint ci ratio: 7.509591e-02	ci left: 6.137507e-02	ci right 6.618850e-02	k: 2550	n:40000
Cons ci ratio: 3.904729e-02	ci left: 1.973054e-01	ci right 2.051880e-01	k: 8049	n:40000
KS ci ratio: 9.395801e-02	ci left: 3.973739e-02	ci right 4.367950e-02	k: 1667	n:40000
OR5AC2   40000 perm   8 sec   (5233 perm/sec)   p_kst 4.167500e-02   p_cons 2.012250e-01   p_joint 6.375000e-02

Outputting figure to mutsig2_images.part000000000122/OR5AC2.3_932_40000_0.041675_0.20122_0.06375.png
                gene_name: OR5AC2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 95 percent done.
OR51T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
OR51T1   10000 perm   2 sec   (6426 perm/sec)   p_kst 9.856000e-01   p_cons 4.822000e-01   p_joint 7.236000e-01

Outputting figure to mutsig2_images.part000000000122/OR51T1.2_1068_10000_0.9856_0.4822_0.7236.png
                gene_name: OR51T1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 96 percent done.
OR52D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
Cons ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
OR52D1   10000 perm   1 sec   (6819 perm/sec)   p_kst 4.156000e-01   p_cons 8.488000e-01   p_joint 8.668000e-01

Outputting figure to mutsig2_images.part000000000122/OR52D1.2_961_10000_0.4156_0.8488_0.8668.png
                gene_name: OR52D1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 98 percent done.
OR52E6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
Cons ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
OR52E6   10000 perm   1 sec   (7085 perm/sec)   p_kst 1.336000e-01   p_cons 1.270000e-02   p_joint 4.530000e-02

Joint ci ratio: 1.784803e-01	ci left: 2.144505e-02	ci right 2.569502e-02	k: 470	n:20000
Cons ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
KS ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
OR52E6   20000 perm   3 sec   (6126 perm/sec)   p_kst 1.311000e-01   p_cons 1.215000e-02   p_joint 2.350000e-02

Joint ci ratio: 1.523175e-01	ci left: 1.995267e-02	ci right 2.327421e-02	k: 647	n:30000
Cons ci ratio: 2.022506e-01	ci left: 1.111515e-02	ci right 1.364726e-02	k: 370	n:30000
KS ci ratio: 5.815393e-02	ci left: 1.276950e-01	ci right 1.353765e-01	k: 3945	n:30000
OR52E6   30000 perm   5 sec   (5769 perm/sec)   p_kst 1.315000e-01   p_cons 1.233333e-02   p_joint 2.156667e-02

Joint ci ratio: 1.317556e-01	ci left: 2.022187e-02	ci right 2.309816e-02	k: 865	n:40000
Cons ci ratio: 1.784089e-01	ci left: 1.086039e-02	ci right 1.301133e-02	k: 476	n:40000
KS ci ratio: 5.032072e-02	ci left: 1.284004e-01	ci right 1.350532e-01	k: 5268	n:40000
OR52E6   40000 perm   7 sec   (5544 perm/sec)   p_kst 1.317000e-01   p_cons 1.190000e-02   p_joint 2.162500e-02

Joint ci ratio: 1.217855e-01	ci left: 1.906239e-02	ci right 2.155374e-02	k: 1014	n:50000
Cons ci ratio: 1.593377e-01	ci left: 1.100637e-02	ci right 1.293091e-02	k: 597	n:50000
KS ci ratio: 4.472037e-02	ci left: 1.302132e-01	ci right 1.361895e-01	k: 6659	n:50000
OR52E6   50000 perm   9 sec   (5371 perm/sec)   p_kst 1.331800e-01   p_cons 1.194000e-02   p_joint 2.028000e-02

Joint ci ratio: 1.074095e-01	ci left: 2.054901e-02	ci right 2.289757e-02	k: 1302	n:60000
Cons ci ratio: 1.470816e-01	ci left: 1.083887e-02	ci right 1.257551e-02	k: 701	n:60000
KS ci ratio: 4.088892e-02	ci left: 1.301106e-01	ci right 1.355583e-01	k: 7969	n:60000
OR52E6   60000 perm   11 sec   (5224 perm/sec)   p_kst 1.328167e-01   p_cons 1.168333e-02   p_joint 2.170000e-02

Joint ci ratio: 8.916078e-02	ci left: 2.567203e-02	ci right 2.808169e-02	k: 1880	n:70000
Cons ci ratio: 1.380598e-01	ci left: 1.059913e-02	ci right 1.218462e-02	k: 796	n:70000
KS ci ratio: 3.777232e-02	ci left: 1.308185e-01	ci right 1.358691e-01	k: 9333	n:70000
OR52E6   70000 perm   14 sec   (5094 perm/sec)   p_kst 1.333286e-01   p_cons 1.137143e-02   p_joint 2.685714e-02

Joint ci ratio: 8.329717e-02	ci left: 2.581429e-02	ci right 2.807019e-02	k: 2154	n:80000
Cons ci ratio: 1.287760e-01	ci left: 1.071217e-02	ci right 1.219857e-02	k: 915	n:80000
KS ci ratio: 3.525738e-02	ci left: 1.314728e-01	ci right 1.362038e-01	k: 10706	n:80000
OR52E6   80000 perm   16 sec   (4956 perm/sec)   p_kst 1.338250e-01   p_cons 1.143750e-02   p_joint 2.692500e-02

Joint ci ratio: 8.829027e-02	ci left: 2.048619e-02	ci right 2.238927e-02	k: 1928	n:90000
Cons ci ratio: 1.215008e-01	ci left: 1.073821e-02	ci right 1.213799e-02	k: 1028	n:90000
KS ci ratio: 3.336321e-02	ci left: 1.307657e-01	ci right 1.352135e-01	k: 11968	n:90000
OR52E6   90000 perm   19 sec   (4847 perm/sec)   p_kst 1.329778e-01   p_cons 1.142222e-02   p_joint 2.142222e-02

Joint ci ratio: 7.432983e-02	ci left: 2.605325e-02	ci right 2.807431e-02	k: 2705	n:100000
Cons ci ratio: 1.154874e-01	ci left: 1.073180e-02	ci right 1.205677e-02	k: 1138	n:100000
KS ci ratio: 3.165510e-02	ci left: 1.308513e-01	ci right 1.350700e-01	k: 13295	n:100000
OR52E6   100000 perm   21 sec   (4743 perm/sec)   p_kst 1.329500e-01   p_cons 1.138000e-02   p_joint 2.705000e-02

Joint ci ratio: 7.076818e-02	ci left: 2.617518e-02	ci right 2.810440e-02	k: 2984	n:110000
Cons ci ratio: 1.100641e-01	ci left: 1.077216e-02	ci right 1.203561e-02	k: 1253	n:110000
KS ci ratio: 3.017553e-02	ci left: 1.309984e-01	ci right 1.350209e-01	k: 14630	n:110000
OR52E6   110000 perm   24 sec   (4649 perm/sec)   p_kst 1.330000e-01   p_cons 1.139091e-02   p_joint 2.712727e-02

Joint ci ratio: 6.769520e-02	ci left: 2.626233e-02	ci right 2.811061e-02	k: 3261	n:120000
Cons ci ratio: 1.051454e-01	ci left: 1.084760e-02	ci right 1.205952e-02	k: 1373	n:120000
KS ci ratio: 2.887220e-02	ci left: 1.312325e-01	ci right 1.350852e-01	k: 15978	n:120000
OR52E6   120000 perm   26 sec   (4560 perm/sec)   p_kst 1.331500e-01   p_cons 1.144167e-02   p_joint 2.717500e-02

Joint ci ratio: 6.510420e-02	ci left: 2.624676e-02	ci right 2.802057e-02	k: 3526	n:130000
Cons ci ratio: 1.012098e-01	ci left: 1.082999e-02	ci right 1.199196e-02	k: 1482	n:130000
KS ci ratio: 2.779380e-02	ci left: 1.308602e-01	ci right 1.345562e-01	k: 17251	n:130000
OR52E6   130000 perm   29 sec   (4471 perm/sec)   p_kst 1.327000e-01   p_cons 1.140000e-02   p_joint 2.712308e-02

Joint ci ratio: 6.458900e-02	ci left: 2.480707e-02	ci right 2.646980e-02	k: 3588	n:140000
Cons ci ratio: 9.722314e-02	ci left: 1.092018e-02	ci right 1.204305e-02	k: 1606	n:140000
KS ci ratio: 2.684535e-02	ci left: 1.303943e-01	ci right 1.339495e-01	k: 18503	n:140000
OR52E6   140000 perm   32 sec   (4388 perm/sec)   p_kst 1.321643e-01   p_cons 1.147143e-02   p_joint 2.562857e-02

Outputting figure to mutsig2_images.part000000000122/OR52E6.2_944_140000_0.13216_0.011471_0.025629.png
                gene_name: OR52E6
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 99 percent done.
OR52I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 8.556441e-03	ci left: 9.503353e-01	ci right 9.585973e-01	k: 9546	n:10000
OR52I2   10000 perm   2 sec   (6513 perm/sec)   p_kst 9.546000e-01   p_cons 3.078000e-01   p_joint 5.020000e-01

Outputting figure to mutsig2_images.part000000000122/OR52I2.2_1057_10000_0.9546_0.3078_0.502.png
                gene_name: OR52I2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000122
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 122 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 4422272: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000123> was used as the working directory.
Started at Wed Oct 24 18:01:58 2012
Results reported at Wed Oct 24 21:00:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000123.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000123.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 123  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000123.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10902.34 sec.
    Max Memory :      5182 MB
    Max Swap   :      7697 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
123
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 123
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 123: processing genes 11038 - 11128
Calculating significance of each gene.
Using projection method.
11038	OR5H2	3.008067e-01
11039	OR5H6	1.383401e-02
11040	OR5I1	1.812640e-06
11041	OR5J2	4.171091e-01
11042	OR5K1	1
11043	OR5K2	4.270678e-01
11044	OR5K3	2.522681e-03
11045	OR5K4	4.101509e-02
11046	OR5L1	2.667088e-01
11047	OR5L2	2.983613e-03
11048	OR5M1	1
11049	OR5M10	9.712258e-04
11050	OR5M11	3.702424e-01
11051	OR5M3	1.289550e-02
11052	OR5M8	1
11053	OR5M9	1
11054	OR5P2	3.151035e-02
11055	OR5P3	1.106847e-01
11056	OR5R1	4.445852e-01
11057	OR5T1	4.315250e-01
11058	OR5T2	6.221866e-05
11059	OR5T3	9.850216e-03
11060	OR5V1	6.358074e-01
11061	OR5W2	8.744653e-07
11062	OR6A2	9.249228e-02
11063	OR6B1	5.550867e-01
11064	OR6B2	1
11065	OR6B3	5.293255e-01
11066	OR6C1	1
11067	OR6C2	2.887065e-02
11068	OR6C3	8.122616e-01
11069	OR6C4	1.459207e-01
11070	OR6C6	6.808180e-02
11071	OR6C65	2.304517e-01
11072	OR6C68	7.342543e-03
11073	OR6C70	5.057239e-01
11074	OR6C74	9.552399e-02
11075	OR6C75	2.347436e-02
11076	OR6C76	1
11077	OR6F1	6.250911e-01
11078	OR6K2	7.433547e-01
11079	OR6K3	7.888413e-01
11080	OR6K6	4.397231e-04
11081	OR6M1	6.332094e-01
11082	OR6N1	4.825867e-01
11083	OR6N2	5.509589e-05
11084	OR6Q1	2.144165e-01
11085	OR6S1	7.780987e-01
11086	OR6T1	6.489387e-01
11087	OR6V1	1
11088	OR6X1	1.966599e-02
11089	OR6Y1	2.384385e-01
11090	OR7A10	1
11091	OR7A17	3.029219e-01
11092	OR7A5	1
11093	OR7C1	6.554694e-01
11094	OR7C2	2.582913e-01
11095	OR7D2	7.248399e-01
11096	OR7D4	5.676786e-01
11097	OR7E24	3.683697e-01
11098	OR7G1	5.698250e-02
11099	OR7G2	3.088839e-01
11100	OR7G3	2.801880e-01
11101	OR8A1	5.334062e-01
11102	OR8B12	1
11103	OR8B2	3.223944e-03
11104	OR8B3	3.665545e-02
11105	OR8B4	1
11106	OR8B8	7.627553e-02
11107	OR8D1	4.221555e-01
11108	OR8D2	3.988397e-01
11109	OR8D4	1
11110	OR8G1	1
11111	OR8G2	1
11112	OR8G5	1
11113	OR8H1	1.081936e-02
11114	OR8H2	1.096346e-06
11115	OR8H3	4.062154e-05
11116	OR8I2	3.513942e-03
11117	OR8J1	1.129237e-01
11118	OR8J3	8.054789e-02
11119	OR8K1	1
11120	OR8K3	5.128226e-04
11121	OR8K5	6.922938e-03
11122	OR8S1	7.714088e-01
11123	OR8U8	1
11124	OR9A2	4.229443e-02
11125	OR9A4	7.140057e-01
11126	OR9G1	1
11127	OR9G4	1
11128	OR9G9	1
Done

Running MutSig 2:
Scatter job 123: processing genes 11038 - 11128
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR5L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
Cons ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
KS ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
OR5L2   10000 perm   2 sec   (5584 perm/sec)   p_kst 3.790000e-02   p_cons 4.015000e-01   p_joint 1.677000e-01

Joint ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
Cons ci ratio: 3.221846e-02	ci left: 4.184345e-01	ci right 4.321872e-01	k: 8506	n:20000
KS ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
OR5L2   20000 perm   7 sec   (3025 perm/sec)   p_kst 3.870000e-02   p_cons 4.253000e-01   p_joint 7.870000e-02

Joint ci ratio: 7.087383e-02	ci left: 8.924436e-02	ci right 9.583480e-02	k: 2775	n:30000
Cons ci ratio: 2.621221e-02	ci left: 4.214599e-01	ci right 4.326876e-01	k: 12812	n:30000
KS ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
OR5L2   30000 perm   9 sec   (3418 perm/sec)   p_kst 3.773333e-02   p_cons 4.270667e-01   p_joint 9.250000e-02

Joint ci ratio: 7.022101e-02	ci left: 6.973143e-02	ci right 7.483087e-02	k: 2890	n:40000
Cons ci ratio: 2.271315e-02	ci left: 4.219458e-01	ci right 4.316648e-01	k: 17072	n:40000
KS ci ratio: 1.013140e-01	ci left: 3.424442e-02	ci right 3.792333e-02	k: 1442	n:40000
OR5L2   40000 perm   11 sec   (3631 perm/sec)   p_kst 3.605000e-02   p_cons 4.268000e-01   p_joint 7.225000e-02

Joint ci ratio: 6.403620e-02	ci left: 6.748304e-02	ci right 7.196707e-02	k: 3485	n:50000
Cons ci ratio: 2.024750e-02	ci left: 4.240968e-01	ci right 4.327915e-01	k: 21422	n:50000
KS ci ratio: 9.082082e-02	ci left: 3.428630e-02	ci right 3.756786e-02	k: 1795	n:50000
OR5L2   50000 perm   13 sec   (3750 perm/sec)   p_kst 3.590000e-02   p_cons 4.284400e-01   p_joint 6.970000e-02

Outputting figure to mutsig2_images.part000000000123/OR5L2.17_940_50000_0.0359_0.42844_0.0697.png
                gene_name: OR5L2
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 1 percent done.
OR8H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
Cons ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
OR8H2   10000 perm   2 sec   (5382 perm/sec)   p_kst 1   p_cons 5.673000e-01   p_joint 9.387000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H2.17_941_10000_1_0.5673_0.9387.png
                gene_name: OR8H2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 2 percent done.
OR5I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
Cons ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
KS ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
OR5I1   10000 perm   2 sec   (5107 perm/sec)   p_kst 5.838000e-01   p_cons 9.237000e-01   p_joint 7.216000e-01

Outputting figure to mutsig2_images.part000000000123/OR5I1.16_948_10000_0.5838_0.9237_0.7216.png
                gene_name: OR5I1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 4 percent done.
OR8J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
OR8J3   10000 perm   2 sec   (5889 perm/sec)   p_kst 7.104000e-01   p_cons 1.764000e-01   p_joint 3.915000e-01

Outputting figure to mutsig2_images.part000000000123/OR8J3.16_950_10000_0.7104_0.1764_0.3915.png
                gene_name: OR8J3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 5 percent done.
OR5J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
Cons ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
OR5J2   10000 perm   2 sec   (5059 perm/sec)   p_kst 1.835000e-01   p_cons 1.126000e-01   p_joint 1.344000e-01

Joint ci ratio: 7.047964e-02	ci left: 1.292088e-01	ci right 1.386979e-01	k: 2678	n:20000
Cons ci ratio: 7.651740e-02	ci left: 1.115439e-01	ci right 1.204681e-01	k: 2319	n:20000
KS ci ratio: 5.661557e-02	ci left: 1.878471e-01	ci right 1.988422e-01	k: 3866	n:20000
OR5J2   20000 perm   4 sec   (4598 perm/sec)   p_kst 1.933000e-01   p_cons 1.159500e-01   p_joint 1.339000e-01

Outputting figure to mutsig2_images.part000000000123/OR5J2.14_941_20000_0.1933_0.11595_0.1339.png
                gene_name: OR5J2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 6 percent done.
OR5L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
Cons ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
KS ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
OR5L1   10000 perm   2 sec   (5944 perm/sec)   p_kst 2.179000e-01   p_cons 6.118000e-01   p_joint 4.424000e-01

Outputting figure to mutsig2_images.part000000000123/OR5L1.14_940_10000_0.2179_0.6118_0.4424.png
                gene_name: OR5L1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 7 percent done.
OR8H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
OR8H3   10000 perm   2 sec   (5664 perm/sec)   p_kst 9.560000e-02   p_cons 6.318000e-01   p_joint 2.170000e-01

Joint ci ratio: 5.959551e-02	ci left: 1.725232e-01	ci right 1.831706e-01	k: 3556	n:20000
Cons ci ratio: 2.191396e-02	ci left: 6.085660e-01	ci right 6.221004e-01	k: 12307	n:20000
KS ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
OR8H3   20000 perm   4 sec   (5086 perm/sec)   p_kst 9.045000e-02   p_cons 6.153500e-01   p_joint 1.778000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H3.13_943_20000_0.09045_0.61535_0.1778.png
                gene_name: OR8H3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 9 percent done.
OR5W2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.881357e-02	ci left: 8.050140e-01	ci right 8.204033e-01	k: 8128	n:10000
KS ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
OR5W2   10000 perm   2 sec   (5672 perm/sec)   p_kst 7.974000e-01   p_cons 8.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5W2.12_935_10000_0.7974_0.8128_1.png
                gene_name: OR5W2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
OR6F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
Cons ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
OR6F1   10000 perm   2 sec   (5428 perm/sec)   p_kst 6.155000e-01   p_cons 1.594000e-01   p_joint 3.716000e-01

Outputting figure to mutsig2_images.part000000000123/OR6F1.12_931_10000_0.6155_0.1594_0.3716.png
                gene_name: OR6F1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
OR8J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
Cons ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
KS ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
OR8J1   10000 perm   2 sec   (5367 perm/sec)   p_kst 2.904000e-01   p_cons 7.548000e-01   p_joint 5.351000e-01

Outputting figure to mutsig2_images.part000000000123/OR8J1.12_953_10000_0.2904_0.7548_0.5351.png
                gene_name: OR8J1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 12 percent done.
OR5T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
OR5T2   10000 perm   2 sec   (5540 perm/sec)   p_kst 7.773000e-01   p_cons 2.776000e-01   p_joint 4.579000e-01

Outputting figure to mutsig2_images.part000000000123/OR5T2.11_1079_10000_0.7773_0.2776_0.4579.png
                gene_name: OR5T2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 13 percent done.
OR5T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
KS ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
OR5T3   10000 perm   2 sec   (5955 perm/sec)   p_kst 4.479000e-01   p_cons 4.385000e-01   p_joint 7.020000e-01

Outputting figure to mutsig2_images.part000000000123/OR5T3.11_1026_10000_0.4479_0.4385_0.702.png
                gene_name: OR5T3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
OR8I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
KS ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
OR8I2   10000 perm   2 sec   (5485 perm/sec)   p_kst 7.234000e-01   p_cons 5.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR8I2.11_936_10000_0.7234_0.5995_1.png
                gene_name: OR8I2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
OR6N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
Cons ci ratio: 2.043634e-02	ci left: 7.781330e-01	ci right 7.943000e-01	k: 7863	n:10000
KS ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
OR6N1   10000 perm   2 sec   (5769 perm/sec)   p_kst 6.052000e-01   p_cons 7.863000e-01   p_joint 7.507000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N1.10_942_10000_0.6052_0.7863_0.7507.png
                gene_name: OR6N1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 17 percent done.
OR5M10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
OR5M10   10000 perm   2 sec   (5581 perm/sec)   p_kst 3.008000e-01   p_cons 2.303000e-01   p_joint 2.572000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M10.9_952_10000_0.3008_0.2303_0.2572.png
                gene_name: OR5M10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 18 percent done.
OR6N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
Cons ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
KS ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
OR6N2   10000 perm   2 sec   (5653 perm/sec)   p_kst 5.484000e-01   p_cons 8.196000e-01   p_joint 6.613000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N2.9_957_10000_0.5484_0.8196_0.6613.png
                gene_name: OR6N2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 20 percent done.
OR5H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
Cons ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
KS ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
OR5H6   10000 perm   2 sec   (5803 perm/sec)   p_kst 5.314000e-01   p_cons 8.126000e-01   p_joint 7.771000e-01

Outputting figure to mutsig2_images.part000000000123/OR5H6.8_982_10000_0.5314_0.8126_0.7771.png
                gene_name: OR5H6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 21 percent done.
OR5R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
Cons ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
OR5R1   10000 perm   2 sec   (6055 perm/sec)   p_kst 5.940000e-01   p_cons 3.442000e-01   p_joint 5.834000e-01

Outputting figure to mutsig2_images.part000000000123/OR5R1.8_977_10000_0.594_0.3442_0.5834.png
                gene_name: OR5R1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 22 percent done.
OR6K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
Cons ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
KS ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
OR6K6   10000 perm   2 sec   (5738 perm/sec)   p_kst 5.380000e-01   p_cons 9.416000e-01   p_joint 6.951000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K6.8_1036_10000_0.538_0.9416_0.6951.png
                gene_name: OR6K6
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 23 percent done.
OR8K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
OR8K3   10000 perm   2 sec   (5802 perm/sec)   p_kst 5.627000e-01   p_cons 3.512000e-01   p_joint 5.283000e-01

Outputting figure to mutsig2_images.part000000000123/OR8K3.8_941_10000_0.5627_0.3512_0.5283.png
                gene_name: OR8K3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 24 percent done.
OR8K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
Cons ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
KS ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
OR8K5   10000 perm   2 sec   (5996 perm/sec)   p_kst 8.343000e-01   p_cons 1.504000e-01   p_joint 4.712000e-01

Outputting figure to mutsig2_images.part000000000123/OR8K5.8_927_10000_0.8343_0.1504_0.4712.png
                gene_name: OR8K5
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 26 percent done.
OR5K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
KS ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
OR5K3   10000 perm   2 sec   (6526 perm/sec)   p_kst 4.180000e-02   p_cons 1.461000e-01   p_joint 7.860000e-02

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 6.745712e-02	ci left: 1.395556e-01	ci right 1.493481e-01	k: 2888	n:20000
KS ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
OR5K3   20000 perm   3 sec   (5768 perm/sec)   p_kst 4.375000e-02   p_cons 1.444000e-01   p_joint 6.905000e-02

Joint ci ratio: 8.449954e-02	ci left: 6.409812e-02	ci right 6.978610e-02	k: 2007	n:30000
Cons ci ratio: 5.462653e-02	ci left: 1.424834e-01	ci right 1.505185e-01	k: 4394	n:30000
KS ci ratio: 1.067247e-01	ci left: 4.073218e-02	ci right 4.535684e-02	k: 1290	n:30000
OR5K3   30000 perm   5 sec   (5477 perm/sec)   p_kst 4.300000e-02   p_cons 1.464667e-01   p_joint 6.690000e-02

Joint ci ratio: 7.815137e-02	ci left: 5.685774e-02	ci right 6.150651e-02	k: 2366	n:40000
Cons ci ratio: 4.752208e-02	ci left: 1.419094e-01	ci right 1.488422e-01	k: 5814	n:40000
KS ci ratio: 9.260478e-02	ci left: 4.088610e-02	ci right 4.488060e-02	k: 1714	n:40000
OR5K3   40000 perm   8 sec   (5305 perm/sec)   p_kst 4.285000e-02   p_cons 1.453500e-01   p_joint 5.915000e-02

Outputting figure to mutsig2_images.part000000000123/OR5K3.7_969_40000_0.04285_0.14535_0.05915.png
                gene_name: OR5K3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 27 percent done.
OR5M11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
OR5M11   10000 perm   2 sec   (5502 perm/sec)   p_kst 8.410000e-02   p_cons 2.147000e-01   p_joint 1.438000e-01

Joint ci ratio: 8.630591e-02	ci left: 8.945046e-02	ci right 9.756816e-02	k: 1869	n:20000
Cons ci ratio: 5.289361e-02	ci left: 2.097192e-01	ci right 2.211636e-01	k: 4308	n:20000
KS ci ratio: 9.258836e-02	ci left: 7.842928e-02	ci right 8.609269e-02	k: 1644	n:20000
OR5M11   20000 perm   4 sec   (4939 perm/sec)   p_kst 8.220000e-02   p_cons 2.154000e-01   p_joint 9.345000e-02

Outputting figure to mutsig2_images.part000000000123/OR5M11.7_921_20000_0.0822_0.2154_0.09345.png
                gene_name: OR5M11
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.098 

Current progress: 28 percent done.
OR5M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
OR5M3   10000 perm   2 sec   (5706 perm/sec)   p_kst 9.174000e-01   p_cons 5.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5M3.7_926_10000_0.9174_0.5084_1.png
                gene_name: OR5M3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
OR5T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
OR5T1   10000 perm   2 sec   (6106 perm/sec)   p_kst 2.392000e-01   p_cons 7.996000e-01   p_joint 3.890000e-01

Outputting figure to mutsig2_images.part000000000123/OR5T1.7_985_10000_0.2392_0.7996_0.389.png
                gene_name: OR5T1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 30 percent done.
OR6K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
OR6K2   10000 perm   2 sec   (5781 perm/sec)   p_kst 3.565000e-01   p_cons 2.630000e-01   p_joint 4.423000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K2.7_979_10000_0.3565_0.263_0.4423.png
                gene_name: OR6K2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 32 percent done.
OR6K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
Cons ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
KS ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
OR6K3   10000 perm   2 sec   (6466 perm/sec)   p_kst 6.763000e-01   p_cons 2.749000e-01   p_joint 5.682000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K3.7_950_10000_0.6763_0.2749_0.5682.png
                gene_name: OR6K3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 33 percent done.
OR8B8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
OR8B8   10000 perm   2 sec   (6476 perm/sec)   p_kst 8.799000e-01   p_cons 9.757000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR8B8.7_939_10000_0.8799_0.9757_1.png
                gene_name: OR8B8
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
OR5K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 6.551852e-02	ci left: 2.548856e-01	ci right 2.722523e-01	k: 2635	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
OR5K1   10000 perm   2 sec   (6158 perm/sec)   p_kst 2.430000e-02   p_cons 2.635000e-01   p_joint 5.230000e-02

Joint ci ratio: 7.951437e-02	ci left: 1.040253e-01	ci right 1.126889e-01	k: 2166	n:20000
Cons ci ratio: 4.640063e-02	ci left: 2.568586e-01	ci right 2.691104e-01	k: 5259	n:20000
KS ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
OR5K1   20000 perm   4 sec   (5469 perm/sec)   p_kst 2.395000e-02   p_cons 2.629500e-01   p_joint 1.083000e-01

Joint ci ratio: 1.224470e-01	ci left: 3.100724e-02	ci right 3.508385e-02	k: 990	n:30000
Cons ci ratio: 3.793823e-02	ci left: 2.574614e-01	ci right 2.674513e-01	k: 7873	n:30000
KS ci ratio: 1.469593e-01	ci left: 2.146189e-02	ci right 2.489798e-02	k: 694	n:30000
OR5K1   30000 perm   6 sec   (5197 perm/sec)   p_kst 2.313333e-02   p_cons 2.624333e-01   p_joint 3.300000e-02

Joint ci ratio: 1.041160e-01	ci left: 3.244034e-02	ci right 3.602770e-02	k: 1368	n:40000
Cons ci ratio: 3.289091e-02	ci left: 2.577206e-01	ci right 2.663640e-01	k: 10481	n:40000
KS ci ratio: 1.285308e-01	ci left: 2.126259e-02	ci right 2.420726e-02	k: 908	n:40000
OR5K1   40000 perm   8 sec   (5059 perm/sec)   p_kst 2.270000e-02   p_cons 2.620250e-01   p_joint 3.420000e-02

Joint ci ratio: 9.177922e-02	ci left: 3.358218e-02	ci right 3.683208e-02	k: 1759	n:50000
Cons ci ratio: 2.939195e-02	ci left: 2.585278e-01	ci right 2.662598e-01	k: 13119	n:50000
KS ci ratio: 1.146652e-01	ci left: 2.152885e-02	ci right 2.416695e-02	k: 1141	n:50000
OR5K1   50000 perm   10 sec   (4927 perm/sec)   p_kst 2.282000e-02   p_cons 2.623800e-01   p_joint 3.518000e-02

Joint ci ratio: 8.068551e-02	ci left: 3.632076e-02	ci right 3.939082e-02	k: 2270	n:60000
Cons ci ratio: 2.745252e-02	ci left: 2.501390e-01	ci right 2.571182e-01	k: 15217	n:60000
KS ci ratio: 1.042628e-01	ci left: 2.181533e-02	ci right 2.423111e-02	k: 1380	n:60000
OR5K1   60000 perm   12 sec   (4808 perm/sec)   p_kst 2.300000e-02   p_cons 2.536167e-01   p_joint 3.783333e-02

Joint ci ratio: 6.845931e-02	ci left: 4.320905e-02	ci right 4.628598e-02	k: 3131	n:70000
Cons ci ratio: 2.409484e-02	ci left: 2.710540e-01	ci right 2.776790e-01	k: 19205	n:70000
KS ci ratio: 9.727807e-02	ci left: 2.156746e-02	ci right 2.378664e-02	k: 1586	n:70000
OR5K1   70000 perm   15 sec   (4703 perm/sec)   p_kst 2.265714e-02   p_cons 2.743571e-01   p_joint 4.472857e-02

Outputting figure to mutsig2_images.part000000000123/OR5K1.6_931_70000_0.022657_0.27436_0.044729.png
                gene_name: OR5K1
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 35 percent done.
OR5M8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
KS ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
OR5M8   10000 perm   2 sec   (6113 perm/sec)   p_kst 3.208000e-01   p_cons 1.766000e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M8.6_940_10000_0.3208_0.1766_0.2062.png
                gene_name: OR5M8
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
OR5M9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
OR5M9   10000 perm   2 sec   (6477 perm/sec)   p_kst 8.804000e-01   p_cons 7.510000e-02   p_joint 2.385000e-01

Joint ci ratio: 5.140613e-02	ci left: 2.194262e-01	ci right 2.310538e-01	k: 4504	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 1.025137e-02	ci left: 8.751112e-01	ci right 8.841781e-01	k: 17594	n:20000
OR5M9   20000 perm   3 sec   (5726 perm/sec)   p_kst 8.797000e-01   p_cons 7.280000e-02   p_joint 2.252000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M9.6_935_20000_0.8797_0.0728_0.2252.png
                gene_name: OR5M9
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 38 percent done.
OR6C68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
OR6C68   10000 perm   2 sec   (6208 perm/sec)   p_kst 4.349000e-01   p_cons 1.538000e-01   p_joint 3.787000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C68.6_956_10000_0.4349_0.1538_0.3787.png
                gene_name: OR6C68
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 39 percent done.
OR6C75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
Cons ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
OR6C75   10000 perm   2 sec   (6556 perm/sec)   p_kst 2.724000e-01   p_cons 2.320000e-02   p_joint 7.150000e-02

Joint ci ratio: 8.651020e-02	ci left: 8.905828e-02	ci right 9.716047e-02	k: 1861	n:20000
Cons ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
KS ci ratio: 4.585633e-02	ci left: 2.614240e-01	ci right 2.737436e-01	k: 5351	n:20000
OR6C75   20000 perm   3 sec   (5806 perm/sec)   p_kst 2.675500e-01   p_cons 2.275000e-02   p_joint 9.305000e-02

Joint ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
Cons ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
KS ci ratio: 3.736853e-02	ci left: 2.633253e-01	ci right 2.733862e-01	k: 8050	n:30000
OR6C75   30000 perm   5 sec   (5506 perm/sec)   p_kst 2.683333e-01   p_cons 2.420000e-02   p_joint 5.900000e-02

Joint ci ratio: 7.720245e-02	ci left: 5.820763e-02	ci right 6.290642e-02	k: 2421	n:40000
Cons ci ratio: 1.260008e-01	ci left: 2.213455e-02	ci right 2.513515e-02	k: 944	n:40000
KS ci ratio: 3.236144e-02	ci left: 2.640121e-01	ci right 2.727215e-01	k: 10734	n:40000
OR6C75   40000 perm   8 sec   (5302 perm/sec)   p_kst 2.683500e-01   p_cons 2.360000e-02   p_joint 6.052500e-02

Joint ci ratio: 7.920517e-02	ci left: 4.484732e-02	ci right 4.856554e-02	k: 2334	n:50000
Cons ci ratio: 1.125647e-01	ci left: 2.234550e-02	ci right 2.503019e-02	k: 1183	n:50000
KS ci ratio: 2.979048e-02	ci left: 2.533730e-01	ci right 2.610552e-01	k: 12860	n:50000
OR6C75   50000 perm   10 sec   (5177 perm/sec)   p_kst 2.572000e-01   p_cons 2.366000e-02   p_joint 4.668000e-02

Joint ci ratio: 6.898526e-02	ci left: 4.930228e-02	ci right 5.284130e-02	k: 3063	n:60000
Cons ci ratio: 1.027868e-01	ci left: 2.244887e-02	ci right 2.489750e-02	k: 1419	n:60000
KS ci ratio: 2.724859e-02	ci left: 2.529595e-01	ci right 2.599641e-01	k: 15387	n:60000
OR6C75   60000 perm   12 sec   (5047 perm/sec)   p_kst 2.564500e-01   p_cons 2.365000e-02   p_joint 5.105000e-02

Joint ci ratio: 6.496383e-02	ci left: 4.783437e-02	ci right 5.106025e-02	k: 3460	n:70000
Cons ci ratio: 9.807137e-02	ci left: 2.121885e-02	ci right 2.342099e-02	k: 1561	n:70000
KS ci ratio: 2.526200e-02	ci left: 2.526989e-01	ci right 2.591785e-01	k: 17915	n:70000
OR6C75   70000 perm   14 sec   (4932 perm/sec)   p_kst 2.559286e-01   p_cons 2.230000e-02   p_joint 4.942857e-02

Outputting figure to mutsig2_images.part000000000123/OR6C75.6_942_70000_0.25593_0.0223_0.049429.png
                gene_name: OR6C75
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 40 percent done.
OR6Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
Cons ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
KS ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
OR6Y1   10000 perm   2 sec   (5823 perm/sec)   p_kst 9.752000e-01   p_cons 8.650000e-02   p_joint 2.879000e-01

Joint ci ratio: 4.560035e-02	ci left: 2.636078e-01	ci right 2.759592e-01	k: 5395	n:20000
Cons ci ratio: 8.909285e-02	ci left: 8.430484e-02	ci right 9.221534e-02	k: 1764	n:20000
KS ci ratio: 4.442515e-03	ci left: 9.727410e-01	ci right 9.771195e-01	k: 19500	n:20000
OR6Y1   20000 perm   4 sec   (5235 perm/sec)   p_kst 9.750000e-01   p_cons 8.820000e-02   p_joint 2.697500e-01

Outputting figure to mutsig2_images.part000000000123/OR6Y1.6_980_20000_0.975_0.0882_0.26975.png
                gene_name: OR6Y1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 41 percent done.
OR7G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
Cons ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
KS ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
OR7G1   10000 perm   2 sec   (5842 perm/sec)   p_kst 7.736000e-01   p_cons 4.480000e-02   p_joint 2.206000e-01

Joint ci ratio: 5.665190e-02	ci left: 1.876493e-01	ci right 1.986400e-01	k: 3862	n:20000
Cons ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
KS ci ratio: 1.502088e-02	ci left: 7.671301e-01	ci right 7.787904e-01	k: 15460	n:20000
OR7G1   20000 perm   4 sec   (5230 perm/sec)   p_kst 7.730000e-01   p_cons 4.585000e-02   p_joint 1.931000e-01

Joint ci ratio: 4.701441e-02	ci left: 1.836915e-01	ci right 1.925689e-01	k: 5643	n:30000
Cons ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
KS ci ratio: 1.228312e-02	ci left: 7.676797e-01	ci right 7.772008e-01	k: 23174	n:30000
OR7G1   30000 perm   6 sec   (4978 perm/sec)   p_kst 7.724667e-01   p_cons 4.540000e-02   p_joint 1.881000e-01

Joint ci ratio: 4.070356e-02	ci left: 1.843798e-01	ci right 1.920656e-01	k: 7528	n:40000
Cons ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
KS ci ratio: 1.061530e-02	ci left: 7.690640e-01	ci right 7.772963e-01	k: 30928	n:40000
OR7G1   40000 perm   8 sec   (4822 perm/sec)   p_kst 7.732000e-01   p_cons 4.547500e-02   p_joint 1.882000e-01

Outputting figure to mutsig2_images.part000000000123/OR7G1.6_1010_40000_0.7732_0.045475_0.1882.png
                gene_name: OR7G1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 43 percent done.
OR8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
Cons ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
KS ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
OR8B2   10000 perm   2 sec   (5806 perm/sec)   p_kst 5.610000e-01   p_cons 1.948000e-01   p_joint 2.736000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B2.6_945_10000_0.561_0.1948_0.2736.png
                gene_name: OR8B2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 44 percent done.
OR8D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.681183e-02	ci left: 4.024296e-01	ci right 4.218216e-01	k: 4121	n:10000
Cons ci ratio: 4.167877e-02	ci left: 4.594788e-01	ci right 4.791391e-01	k: 4693	n:10000
KS ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
OR8D2   10000 perm   2 sec   (5856 perm/sec)   p_kst 3.793000e-01   p_cons 4.693000e-01   p_joint 4.121000e-01

Outputting figure to mutsig2_images.part000000000123/OR8D2.6_939_10000_0.3793_0.4693_0.4121.png
                gene_name: OR8D2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
OR8H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.479096e-02	ci left: 2.073764e-01	ci right 2.235897e-01	k: 2154	n:10000
Cons ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
KS ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
OR8H1   10000 perm   2 sec   (6269 perm/sec)   p_kst 5.749000e-01   p_cons 4.190000e-02   p_joint 2.154000e-01

Joint ci ratio: 9.409227e-02	ci left: 7.608071e-02	ci right 8.364197e-02	k: 1596	n:20000
Cons ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
KS ci ratio: 2.375108e-02	ci left: 5.697166e-01	ci right 5.834612e-01	k: 11532	n:20000
OR8H1   20000 perm   4 sec   (5588 perm/sec)   p_kst 5.766000e-01   p_cons 4.075000e-02   p_joint 7.980000e-02

Joint ci ratio: 6.811013e-02	ci left: 9.603655e-02	ci right 1.028412e-01	k: 2982	n:30000
Cons ci ratio: 1.079538e-01	ci left: 3.982288e-02	ci right 4.439966e-02	k: 1262	n:30000
KS ci ratio: 1.946199e-02	ci left: 5.692488e-01	ci right 5.804700e-01	k: 17246	n:30000
OR8H1   30000 perm   6 sec   (5304 perm/sec)   p_kst 5.748667e-01   p_cons 4.206667e-02   p_joint 9.940000e-02

Joint ci ratio: 6.410036e-02	ci left: 8.275276e-02	ci right 8.825759e-02	k: 3419	n:40000
Cons ci ratio: 9.343317e-02	ci left: 4.017727e-02	ci right 4.413955e-02	k: 1685	n:40000
KS ci ratio: 1.690710e-02	ci left: 5.684854e-01	ci right 5.782039e-01	k: 22934	n:40000
OR8H1   40000 perm   8 sec   (5125 perm/sec)   p_kst 5.733500e-01   p_cons 4.212500e-02   p_joint 8.547500e-02

Outputting figure to mutsig2_images.part000000000123/OR8H1.6_938_40000_0.57335_0.042125_0.085475.png
                gene_name: OR8H1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 46 percent done.
OR5K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
Cons ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
KS ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
OR5K4   10000 perm   2 sec   (6115 perm/sec)   p_kst 3.158000e-01   p_cons 9.874000e-01   p_joint 6.652000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K4.5_968_10000_0.3158_0.9874_0.6652.png
                gene_name: OR5K4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 48 percent done.
OR5P2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
Cons ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
KS ci ratio: 3.906893e-02	ci left: 4.917510e-01	ci right 5.114481e-01	k: 5016	n:10000
OR5P2   10000 perm   2 sec   (6157 perm/sec)   p_kst 5.016000e-01   p_cons 2.083000e-01   p_joint 4.101000e-01

Outputting figure to mutsig2_images.part000000000123/OR5P2.5_973_10000_0.5016_0.2083_0.4101.png
                gene_name: OR5P2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 49 percent done.
OR6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
Cons ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
KS ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
OR6A2   10000 perm   2 sec   (6234 perm/sec)   p_kst 6.450000e-01   p_cons 2.731000e-01   p_joint 5.391000e-01

Outputting figure to mutsig2_images.part000000000123/OR6A2.5_988_10000_0.645_0.2731_0.5391.png
                gene_name: OR6A2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 50 percent done.
OR6C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
Cons ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
OR6C2   10000 perm   2 sec   (6511 perm/sec)   p_kst 1.418000e-01   p_cons 8.502000e-01   p_joint 2.798000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C2.5_943_10000_0.1418_0.8502_0.2798.png
                gene_name: OR6C2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 51 percent done.
OR6T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
Cons ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
KS ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
OR6T1   10000 perm   2 sec   (5975 perm/sec)   p_kst 9.590000e-02   p_cons 9.880000e-02   p_joint 9.650000e-02

Joint ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
Cons ci ratio: 8.011688e-02	ci left: 1.026010e-01	ci right 1.112137e-01	k: 2137	n:20000
KS ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
OR6T1   20000 perm   4 sec   (5363 perm/sec)   p_kst 1.038000e-01   p_cons 1.068500e-01   p_joint 7.830000e-02

Outputting figure to mutsig2_images.part000000000123/OR6T1.5_975_20000_0.1038_0.10685_0.0783.png
                gene_name: OR6T1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 52 percent done.
OR6X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
Cons ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
KS ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
OR6X1   10000 perm   2 sec   (5918 perm/sec)   p_kst 6.640000e-01   p_cons 2.512000e-01   p_joint 4.985000e-01

Outputting figure to mutsig2_images.part000000000123/OR6X1.5_941_10000_0.664_0.2512_0.4985.png
                gene_name: OR6X1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 54 percent done.
OR7E24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
Cons ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
KS ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
OR7E24   10000 perm   2 sec   (5731 perm/sec)   p_kst 3.812000e-01   p_cons 8.127000e-01   p_joint 6.172000e-01

Outputting figure to mutsig2_images.part000000000123/OR7E24.5_1024_10000_0.3812_0.8127_0.6172.png
                gene_name: OR7E24
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 55 percent done.
OR9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
Cons ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
OR9A2   10000 perm   2 sec   (5956 perm/sec)   p_kst 3.150000e-02   p_cons 9.891000e-01   p_joint 8.210000e-02

Joint ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
Cons ci ratio: 2.648592e-03	ci left: 9.895923e-01	ci right 9.922621e-01	k: 19820	n:20000
KS ci ratio: 1.493429e-01	ci left: 3.080828e-02	ci right 3.582860e-02	k: 665	n:20000
OR9A2   20000 perm   4 sec   (5348 perm/sec)   p_kst 3.325000e-02   p_cons 9.910000e-01   p_joint 8.550000e-02

Joint ci ratio: 7.727441e-02	ci left: 7.593914e-02	ci right 8.207602e-02	k: 2369	n:30000
Cons ci ratio: 2.346093e-03	ci left: 9.881759e-01	ci right 9.905279e-01	k: 29682	n:30000
KS ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
OR9A2   30000 perm   6 sec   (5091 perm/sec)   p_kst 3.280000e-02   p_cons 9.894000e-01   p_joint 7.896667e-02

Joint ci ratio: 6.399810e-02	ci left: 8.299911e-02	ci right 8.851120e-02	k: 3429	n:40000
Cons ci ratio: 1.844023e-03	ci left: 9.902883e-01	ci right 9.921394e-01	k: 39650	n:40000
KS ci ratio: 1.067267e-01	ci left: 3.088117e-02	ci right 3.438711e-02	k: 1304	n:40000
OR9A2   40000 perm   8 sec   (4931 perm/sec)   p_kst 3.260000e-02   p_cons 9.912500e-01   p_joint 8.572500e-02

Joint ci ratio: 5.957074e-02	ci left: 7.732085e-02	ci right 8.208808e-02	k: 3984	n:50000
Cons ci ratio: 1.642239e-03	ci left: 9.904677e-01	ci right 9.921144e-01	k: 49566	n:50000
KS ci ratio: 9.682545e-02	ci left: 3.020110e-02	ci right 3.329358e-02	k: 1586	n:50000
OR9A2   50000 perm   10 sec   (4806 perm/sec)   p_kst 3.172000e-02   p_cons 9.913200e-01   p_joint 7.968000e-02

Outputting figure to mutsig2_images.part000000000123/OR9A2.5_937_50000_0.03172_0.99132_0.07968.png
                gene_name: OR9A2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 56 percent done.
OR9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
Cons ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
OR9A4   10000 perm   2 sec   (5871 perm/sec)   p_kst 3.011000e-01   p_cons 1.775000e-01   p_joint 2.740000e-01

Outputting figure to mutsig2_images.part000000000123/OR9A4.5_949_10000_0.3011_0.1775_0.274.png
                gene_name: OR9A4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 57 percent done.
OR9G9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
Cons ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
OR9G9   10000 perm   2 sec   (6045 perm/sec)   p_kst 2.666000e-01   p_cons 2.522000e-01   p_joint 3.693000e-01

Outputting figure to mutsig2_images.part000000000123/OR9G9.5_920_10000_0.2666_0.2522_0.3693.png
                gene_name: OR9G9
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 59 percent done.
OR5H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
Cons ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
OR5H2   10000 perm   2 sec   (6624 perm/sec)   p_kst 1.395000e-01   p_cons 5.336000e-01   p_joint 2.477000e-01

Outputting figure to mutsig2_images.part000000000123/OR5H2.4_949_10000_0.1395_0.5336_0.2477.png
                gene_name: OR5H2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 60 percent done.
OR5K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
Cons ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
KS ci ratio: 1.420320e-02	ci left: 8.775616e-01	ci right 8.902138e-01	k: 8840	n:10000
OR5K2   10000 perm   2 sec   (6502 perm/sec)   p_kst 8.840000e-01   p_cons 2.975000e-01   p_joint 6.023000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K2.4_954_10000_0.884_0.2975_0.6023.png
                gene_name: OR5K2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 61 percent done.
OR5P3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
Cons ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
KS ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
OR5P3   10000 perm   2 sec   (6169 perm/sec)   p_kst 6.161000e-01   p_cons 1.482000e-01   p_joint 3.225000e-01

Outputting figure to mutsig2_images.part000000000123/OR5P3.4_939_10000_0.6161_0.1482_0.3225.png
                gene_name: OR5P3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 62 percent done.
OR6C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
Cons ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
KS ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
OR6C1   10000 perm   2 sec   (6314 perm/sec)   p_kst 5.040000e-01   p_cons 2.430000e-02   p_joint 8.780000e-02

Joint ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
Cons ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
KS ci ratio: 2.730933e-02	ci left: 5.004456e-01	ci right 5.143523e-01	k: 10148	n:20000
OR6C1   20000 perm   4 sec   (5650 perm/sec)   p_kst 5.074000e-01   p_cons 2.595000e-02   p_joint 1.038500e-01

Joint ci ratio: 7.264673e-02	ci left: 8.524378e-02	ci right 9.170284e-02	k: 2653	n:30000
Cons ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
KS ci ratio: 2.220949e-02	ci left: 5.037257e-01	ci right 5.150725e-01	k: 15282	n:30000
OR6C1   30000 perm   6 sec   (5388 perm/sec)   p_kst 5.094000e-01   p_cons 2.603333e-02   p_joint 8.843333e-02

Joint ci ratio: 6.858537e-02	ci left: 7.290470e-02	ci right 7.810713e-02	k: 3019	n:40000
Cons ci ratio: 1.200806e-01	ci left: 2.438968e-02	ci right 2.752965e-02	k: 1037	n:40000
KS ci ratio: 1.931905e-02	ci left: 5.022877e-01	ci right 5.121112e-01	k: 20288	n:40000
OR6C1   40000 perm   8 sec   (5213 perm/sec)   p_kst 5.072000e-01   p_cons 2.592500e-02   p_joint 7.547500e-02

Joint ci ratio: 6.635756e-02	ci left: 6.307103e-02	ci right 6.741961e-02	k: 3261	n:50000
Cons ci ratio: 1.085470e-01	ci left: 2.403851e-02	ci right 2.681696e-02	k: 1270	n:50000
KS ci ratio: 1.735235e-02	ci left: 5.007074e-01	ci right 5.094920e-01	k: 25255	n:50000
OR6C1   50000 perm   10 sec   (5074 perm/sec)   p_kst 5.051000e-01   p_cons 2.540000e-02   p_joint 6.522000e-02

Joint ci ratio: 6.034869e-02	ci left: 6.371384e-02	ci right 6.769496e-02	k: 3941	n:60000
Cons ci ratio: 9.866558e-02	ci left: 2.436717e-02	ci right 2.691233e-02	k: 1537	n:60000
KS ci ratio: 1.583050e-02	ci left: 5.014076e-01	ci right 5.094252e-01	k: 30325	n:60000
OR6C1   60000 perm   12 sec   (4960 perm/sec)   p_kst 5.054167e-01   p_cons 2.561667e-02   p_joint 6.568333e-02

Outputting figure to mutsig2_images.part000000000123/OR6C1.4_942_60000_0.50542_0.025617_0.065683.png
                gene_name: OR6C1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 63 percent done.
OR6C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
Cons ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
OR6C6   10000 perm   2 sec   (6157 perm/sec)   p_kst 8.870000e-02   p_cons 8.123000e-01   p_joint 2.483000e-01

Joint ci ratio: 5.582050e-02	ci left: 1.922491e-01	ci right 2.033389e-01	k: 3955	n:20000
Cons ci ratio: 1.349044e-02	ci left: 8.029770e-01	ci right 8.139331e-01	k: 16170	n:20000
KS ci ratio: 8.610289e-02	ci left: 8.984267e-02	ci right 9.797583e-02	k: 1877	n:20000
OR6C6   20000 perm   4 sec   (5286 perm/sec)   p_kst 9.385000e-02   p_cons 8.085000e-01   p_joint 1.977500e-01

Outputting figure to mutsig2_images.part000000000123/OR6C6.4_947_20000_0.09385_0.8085_0.19775.png
                gene_name: OR6C6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 65 percent done.
OR6C74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
Cons ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
OR6C74   10000 perm   2 sec   (6524 perm/sec)   p_kst 3.659000e-01   p_cons 8.163000e-01   p_joint 5.795000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C74.4_942_10000_0.3659_0.8163_0.5795.png
                gene_name: OR6C74
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 66 percent done.
OR6Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 4.749465e-02	ci left: 3.954571e-01	ci right 4.147982e-01	k: 4051	n:10000
OR6Q1   10000 perm   2 sec   (6205 perm/sec)   p_kst 4.051000e-01   p_cons 9.248000e-01   p_joint 8.607000e-01

Outputting figure to mutsig2_images.part000000000123/OR6Q1.4_957_10000_0.4051_0.9248_0.8607.png
                gene_name: OR6Q1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 67 percent done.
OR6V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
Cons ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
KS ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
OR6V1   10000 perm   2 sec   (6535 perm/sec)   p_kst 4.670000e-02   p_cons 1.411000e-01   p_joint 1.419000e-01

Joint ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
Cons ci ratio: 6.663696e-02	ci left: 1.425627e-01	ci right 1.524400e-01	k: 2949	n:20000
KS ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
OR6V1   20000 perm   3 sec   (5829 perm/sec)   p_kst 4.730000e-02   p_cons 1.474500e-01   p_joint 5.075000e-02

Joint ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
Cons ci ratio: 5.453933e-02	ci left: 1.428788e-01	ci right 1.509230e-01	k: 4406	n:30000
KS ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
OR6V1   30000 perm   5 sec   (5577 perm/sec)   p_kst 4.793333e-02   p_cons 1.468667e-01   p_joint 4.350000e-02

Joint ci ratio: 7.959096e-02	ci left: 5.489489e-02	ci right 5.946966e-02	k: 2286	n:40000
Cons ci ratio: 4.712920e-02	ci left: 1.439639e-01	ci right 1.509374e-01	k: 5897	n:40000
KS ci ratio: 8.825691e-02	ci left: 4.492195e-02	ci right 4.909413e-02	k: 1879	n:40000
OR6V1   40000 perm   7 sec   (5401 perm/sec)   p_kst 4.697500e-02   p_cons 1.474250e-01   p_joint 5.715000e-02

Outputting figure to mutsig2_images.part000000000123/OR6V1.4_945_40000_0.046975_0.14743_0.05715.png
                gene_name: OR6V1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 68 percent done.
OR7A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
KS ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
OR7A17   10000 perm   2 sec   (6303 perm/sec)   p_kst 5.080000e-02   p_cons 5.920000e-02   p_joint 4.280000e-02

Joint ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
Cons ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
KS ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
OR7A17   20000 perm   4 sec   (5660 perm/sec)   p_kst 5.190000e-02   p_cons 5.935000e-02   p_joint 2.005000e-02

Joint ci ratio: 1.885683e-01	ci left: 1.285992e-02	ci right 1.556869e-02	k: 425	n:30000
Cons ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
KS ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
OR7A17   30000 perm   6 sec   (5358 perm/sec)   p_kst 5.190000e-02   p_cons 5.923333e-02   p_joint 1.416667e-02

Joint ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
Cons ci ratio: 7.481437e-02	ci left: 6.181718e-02	ci right 6.664632e-02	k: 2568	n:40000
KS ci ratio: 8.489861e-02	ci left: 4.844777e-02	ci right 5.276777e-02	k: 2023	n:40000
OR7A17   40000 perm   8 sec   (5156 perm/sec)   p_kst 5.057500e-02   p_cons 6.420000e-02   p_joint 2.287500e-02

Joint ci ratio: 1.060069e-01	ci left: 2.520711e-02	ci right 2.804821e-02	k: 1330	n:50000
Cons ci ratio: 6.677461e-02	ci left: 6.232285e-02	ci right 6.664788e-02	k: 3223	n:50000
KS ci ratio: 7.552790e-02	ci left: 4.918599e-02	ci right 5.306634e-02	k: 2555	n:50000
OR7A17   50000 perm   10 sec   (5012 perm/sec)   p_kst 5.110000e-02   p_cons 6.446000e-02   p_joint 2.660000e-02

Joint ci ratio: 1.048471e-01	ci left: 2.157172e-02	ci right 2.397475e-02	k: 1365	n:60000
Cons ci ratio: 6.038969e-02	ci left: 6.363168e-02	ci right 6.761046e-02	k: 3936	n:60000
KS ci ratio: 6.870218e-02	ci left: 4.969575e-02	ci right 5.324779e-02	k: 3087	n:60000
OR7A17   60000 perm   12 sec   (4894 perm/sec)   p_kst 5.145000e-02   p_cons 6.560000e-02   p_joint 2.275000e-02

Joint ci ratio: 9.258083e-02	ci left: 2.381412e-02	ci right 2.613977e-02	k: 1747	n:70000
Cons ci ratio: 5.582014e-02	ci left: 6.397421e-02	ci right 6.766188e-02	k: 4606	n:70000
KS ci ratio: 6.381785e-02	ci left: 4.950838e-02	ci right 5.278609e-02	k: 3579	n:70000
OR7A17   70000 perm   15 sec   (4789 perm/sec)   p_kst 5.112857e-02   p_cons 6.580000e-02   p_joint 2.495714e-02

Outputting figure to mutsig2_images.part000000000123/OR7A17.4_932_70000_0.051129_0.0658_0.024957.png
                gene_name: OR7A17
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 70 percent done.
OR8B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
Cons ci ratio: 1.575394e-01	ci left: 5.369051e-02	ci right 6.296887e-02	k: 582	n:10000
KS ci ratio: 1.818042e-02	ci left: 8.153757e-01	ci right 8.304357e-01	k: 8230	n:10000
OR8B3   10000 perm   2 sec   (6134 perm/sec)   p_kst 8.230000e-01   p_cons 5.820000e-02   p_joint 2.289000e-01

Joint ci ratio: 5.547982e-02	ci left: 1.941785e-01	ci right 2.053090e-01	k: 3994	n:20000
Cons ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
KS ci ratio: 1.225289e-02	ci left: 8.313514e-01	ci right 8.416505e-01	k: 16731	n:20000
OR8B3   20000 perm   4 sec   (5469 perm/sec)   p_kst 8.365500e-01   p_cons 6.210000e-02   p_joint 1.997000e-01

Joint ci ratio: 4.387847e-02	ci left: 2.055017e-01	ci right 2.147545e-01	k: 6303	n:30000
Cons ci ratio: 8.569486e-02	ci left: 6.239923e-02	ci right 6.801866e-02	k: 1955	n:30000
KS ci ratio: 1.005362e-02	ci left: 8.309527e-01	ci right 8.393822e-01	k: 25056	n:30000
OR8B3   30000 perm   6 sec   (5270 perm/sec)   p_kst 8.352000e-01   p_cons 6.516667e-02   p_joint 2.101000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B3.4_944_30000_0.8352_0.065167_0.2101.png
                gene_name: OR8B3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 71 percent done.
OR8D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
OR8D4   10000 perm   2 sec   (6638 perm/sec)   p_kst 9.794000e-01   p_cons 9.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR8D4.4_947_10000_0.9794_0.9911_1.png
                gene_name: OR8D4
               theta_stop: 0.0057 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
OR8G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
OR8G2   10000 perm   1 sec   (7166 perm/sec)   p_kst 6.814000e-01   p_cons 4.756000e-01   p_joint 6.972000e-01

Outputting figure to mutsig2_images.part000000000123/OR8G2.4_917_10000_0.6814_0.4756_0.6972.png
                gene_name: OR8G2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 73 percent done.
OR8S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
Cons ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
KS ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
OR8S1   10000 perm   3 sec   (3711 perm/sec)   p_kst 5.736000e-01   p_cons 8.986000e-01   p_joint 7.237000e-01

Outputting figure to mutsig2_images.part000000000123/OR8S1.4_1087_10000_0.5736_0.8986_0.7237.png
                gene_name: OR8S1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 74 percent done.
OR9G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
Cons ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
KS ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
OR9G4   10000 perm   2 sec   (6173 perm/sec)   p_kst 6.698000e-01   p_cons 2.647000e-01   p_joint 5.925000e-01

Outputting figure to mutsig2_images.part000000000123/OR9G4.4_987_10000_0.6698_0.2647_0.5925.png
                gene_name: OR9G4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 76 percent done.
OR5M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.573360e-03	ci left: 9.602659e-01	ci right 9.676606e-01	k: 9641	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
OR5M1   10000 perm   2 sec   (5914 perm/sec)   p_kst 6.865000e-01   p_cons 9.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5M1.3_952_10000_0.6865_0.9641_1.png
                gene_name: OR5M1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
OR6C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
OR6C3   10000 perm   2 sec   (4457 perm/sec)   p_kst 2.621000e-01   p_cons 1.945000e-01   p_joint 1.347000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C3.3_939_10000_0.2621_0.1945_0.1347.png
                gene_name: OR6C3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 78 percent done.
OR6C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
OR6C4   10000 perm   2 sec   (5123 perm/sec)   p_kst 4.100000e-03   p_cons 6.000000e-04   p_joint 1.600000e-03

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
OR6C4   20000 perm   6 sec   (3565 perm/sec)   p_kst 3.450000e-03   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
KS ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
OR6C4   30000 perm   8 sec   (3709 perm/sec)   p_kst 3.300000e-03   p_cons 6.666667e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
KS ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
OR6C4   40000 perm   10 sec   (3877 perm/sec)   p_kst 3.175000e-03   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
KS ci ratio: 3.206569e-01	ci left: 2.502884e-03	ci right 3.476241e-03	k: 148	n:50000
OR6C4   50000 perm   13 sec   (3961 perm/sec)   p_kst 2.960000e-03   p_cons 6.400000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
KS ci ratio: 2.975996e-01	ci left: 2.454739e-03	ci right 3.327781e-03	k: 172	n:60000
OR6C4   60000 perm   15 sec   (3967 perm/sec)   p_kst 2.866667e-03   p_cons 6.666667e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 5.841671e-01	ci left: 4.567570e-04	ci right 8.437370e-04	k: 44	n:70000
KS ci ratio: 2.747289e-01	ci left: 2.501929e-03	ci right 3.311578e-03	k: 202	n:70000
OR6C4   70000 perm   18 sec   (3965 perm/sec)   p_kst 2.885714e-03   p_cons 6.285714e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
KS ci ratio: 2.621349e-01	ci left: 2.422357e-03	ci right 3.164430e-03	k: 222	n:80000
OR6C4   80000 perm   20 sec   (3950 perm/sec)   p_kst 2.775000e-03   p_cons 6.125000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 5.382919e-01	ci left: 4.315412e-04	ci right 7.576105e-04	k: 52	n:90000
KS ci ratio: 2.432249e-01	ci left: 2.527925e-03	ci right 3.238051e-03	k: 258	n:90000
OR6C4   90000 perm   23 sec   (3975 perm/sec)   p_kst 2.866667e-03   p_cons 5.777778e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 5.059155e-01	ci left: 4.491647e-04	ci right 7.609919e-04	k: 59	n:100000
KS ci ratio: 2.294587e-01	ci left: 2.576205e-03	ci right 3.253137e-03	k: 290	n:100000
OR6C4   100000 perm   25 sec   (3984 perm/sec)   p_kst 2.900000e-03   p_cons 5.900000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 4.823717e-01	ci left: 4.560798e-04	ci right 7.531010e-04	k: 65	n:110000
KS ci ratio: 2.219674e-01	ci left: 2.513535e-03	ci right 3.149491e-03	k: 310	n:110000
OR6C4   110000 perm   28 sec   (3984 perm/sec)   p_kst 2.818182e-03   p_cons 5.909091e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 4.683910e-01	ci left: 4.474110e-04	ci right 7.276437e-04	k: 69	n:120000
KS ci ratio: 2.122896e-01	ci left: 2.532606e-03	ci right 3.141814e-03	k: 339	n:120000
OR6C4   120000 perm   30 sec   (3976 perm/sec)   p_kst 2.825000e-03   p_cons 5.750000e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.354182e-01	ci left: 4.879909e-04	ci right 7.658418e-04	k: 80	n:130000
KS ci ratio: 2.054584e-01	ci left: 2.505457e-03	ci right 3.086305e-03	k: 362	n:130000
OR6C4   130000 perm   33 sec   (3958 perm/sec)   p_kst 2.784615e-03   p_cons 6.153846e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 4.201360e-01	ci left: 4.913777e-04	ci right 7.585831e-04	k: 86	n:140000
KS ci ratio: 1.974594e-01	ci left: 2.529979e-03	ci right 3.090929e-03	k: 392	n:140000
OR6C4   140000 perm   36 sec   (3932 perm/sec)   p_kst 2.800000e-03   p_cons 6.142857e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 4.108016e-01	ci left: 4.824976e-04	ci right 7.374512e-04	k: 90	n:150000
KS ci ratio: 1.921582e-01	ci left: 2.500823e-03	ci right 3.038683e-03	k: 414	n:150000
OR6C4   150000 perm   38 sec   (3908 perm/sec)   p_kst 2.760000e-03   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 3.978938e-01	ci left: 4.860281e-04	ci right 7.326541e-04	k: 96	n:160000
KS ci ratio: 1.864087e-01	ci left: 2.499323e-03	ci right 3.018956e-03	k: 440	n:160000
OR6C4   160000 perm   41 sec   (3882 perm/sec)   p_kst 2.750000e-03   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 3.899375e-01	ci left: 4.786365e-04	ci right 7.154062e-04	k: 100	n:170000
KS ci ratio: 1.799903e-01	ci left: 2.531912e-03	ci right 3.038222e-03	k: 472	n:170000
OR6C4   170000 perm   44 sec   (3851 perm/sec)   p_kst 2.776471e-03   p_cons 5.882353e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 3.736421e-01	ci left: 4.972497e-04	ci right 7.304346e-04	k: 109	n:180000
KS ci ratio: 1.747135e-01	ci left: 2.545212e-03	ci right 3.037685e-03	k: 501	n:180000
OR6C4   180000 perm   47 sec   (3820 perm/sec)   p_kst 2.783333e-03   p_cons 6.055556e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.686519e-01	ci left: 4.853948e-04	ci right 7.092475e-04	k: 112	n:190000
KS ci ratio: 1.697150e-01	ci left: 2.562345e-03	ci right 3.042498e-03	k: 531	n:190000
OR6C4   190000 perm   50 sec   (3786 perm/sec)   p_kst 2.794737e-03   p_cons 5.894737e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.592380e-01	ci left: 4.883822e-04	ci right 7.065164e-04	k: 118	n:200000
KS ci ratio: 1.663136e-01	ci left: 2.539600e-03	ci right 3.004998e-03	k: 553	n:200000
OR6C4   200000 perm   53 sec   (3753 perm/sec)   p_kst 2.765000e-03   p_cons 5.900000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.519216e-01	ci left: 4.868088e-04	ci right 6.988006e-04	k: 123	n:210000
KS ci ratio: 1.610198e-01	ci left: 2.587647e-03	ci right 3.045296e-03	k: 590	n:210000
OR6C4   210000 perm   56 sec   (3720 perm/sec)   p_kst 2.809524e-03   p_cons 5.857143e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.450348e-01	ci left: 4.854193e-04	ci right 6.917457e-04	k: 128	n:220000
KS ci ratio: 1.577197e-01	ci left: 2.579130e-03	ci right 3.025039e-03	k: 615	n:220000
OR6C4   220000 perm   60 sec   (3686 perm/sec)   p_kst 2.795455e-03   p_cons 5.818182e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.398081e-01	ci left: 4.802098e-04	ci right 6.805513e-04	k: 132	n:230000
KS ci ratio: 1.547355e-01	ci left: 2.567261e-03	ci right 3.001941e-03	k: 639	n:230000
OR6C4   230000 perm   63 sec   (3650 perm/sec)   p_kst 2.778261e-03   p_cons 5.739130e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.348119e-01	ci left: 4.754560e-04	ci right 6.702685e-04	k: 136	n:240000
KS ci ratio: 1.527240e-01	ci left: 2.528397e-03	ci right 2.950421e-03	k: 656	n:240000
OR6C4   240000 perm   66 sec   (3614 perm/sec)   p_kst 2.733333e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.265719e-01	ci left: 4.821138e-04	ci right 6.737734e-04	k: 143	n:250000
KS ci ratio: 1.495699e-01	ci left: 2.535026e-03	ci right 2.948636e-03	k: 684	n:250000
OR6C4   250000 perm   70 sec   (3577 perm/sec)   p_kst 2.736000e-03   p_cons 5.720000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.199737e-01	ci left: 4.847757e-04	ci right 6.728020e-04	k: 149	n:260000
KS ci ratio: 1.461928e-01	ci left: 2.556050e-03	ci right 2.962852e-03	k: 716	n:260000
OR6C4   260000 perm   73 sec   (3541 perm/sec)   p_kst 2.753846e-03   p_cons 5.730769e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.157919e-01	ci left: 4.804538e-04	ci right 6.638765e-04	k: 153	n:270000
KS ci ratio: 1.438068e-01	ci left: 2.547045e-03	ci right 2.945230e-03	k: 740	n:270000
OR6C4   270000 perm   77 sec   (3505 perm/sec)   p_kst 2.740741e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.078946e-01	ci left: 4.896311e-04	ci right 6.709660e-04	k: 161	n:280000
KS ci ratio: 1.400726e-01	ci left: 2.593868e-03	ci right 2.987964e-03	k: 780	n:280000
OR6C4   280000 perm   81 sec   (3470 perm/sec)   p_kst 2.785714e-03   p_cons 5.750000e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.996810e-01	ci left: 5.014174e-04	ci right 6.812210e-04	k: 170	n:290000
KS ci ratio: 1.366149e-01	ci left: 2.637585e-03	ci right 3.027628e-03	k: 820	n:290000
OR6C4   290000 perm   84 sec   (3435 perm/sec)   p_kst 2.827586e-03   p_cons 5.862069e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.945578e-01	ci left: 5.032130e-04	ci right 6.799999e-04	k: 176	n:300000
KS ci ratio: 1.337913e-01	ci left: 2.662389e-03	ci right 3.047315e-03	k: 855	n:300000
OR6C4   300000 perm   88 sec   (3399 perm/sec)   p_kst 2.850000e-03   p_cons 5.866667e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.896887e-01	ci left: 5.049172e-04	ci right 6.788333e-04	k: 182	n:310000
KS ci ratio: 1.318051e-01	ci left: 2.657589e-03	ci right 3.035671e-03	k: 881	n:310000
OR6C4   310000 perm   92 sec   (3360 perm/sec)   p_kst 2.841935e-03   p_cons 5.870968e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.835561e-01	ci left: 5.123420e-04	ci right 6.844115e-04	k: 190	n:320000
KS ci ratio: 1.289822e-01	ci left: 2.692442e-03	ci right 3.066650e-03	k: 920	n:320000
OR6C4   320000 perm   96 sec   (3321 perm/sec)   p_kst 2.875000e-03   p_cons 5.937500e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.784983e-01	ci left: 5.165341e-04	ci right 6.863746e-04	k: 197	n:330000
KS ci ratio: 1.271998e-01	ci left: 2.687116e-03	ci right 3.055033e-03	k: 946	n:330000
OR6C4   330000 perm   101 sec   (3284 perm/sec)   p_kst 2.866667e-03   p_cons 5.969697e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771039e-01	ci left: 5.068141e-04	ci right 6.724787e-04	k: 199	n:340000
KS ci ratio: 1.249751e-01	ci left: 2.704931e-03	ci right 3.068330e-03	k: 980	n:340000
OR6C4   340000 perm   105 sec   (3246 perm/sec)   p_kst 2.882353e-03   p_cons 5.852941e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.737041e-01	ci left: 5.056330e-04	ci right 6.685349e-04	k: 204	n:350000
KS ci ratio: 1.235364e-01	ci left: 2.691317e-03	ci right 3.048421e-03	k: 1003	n:350000
OR6C4   350000 perm   109 sec   (3210 perm/sec)   p_kst 2.865714e-03   p_cons 5.828571e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.723801e-01	ci left: 4.967625e-04	ci right 6.558999e-04	k: 206	n:360000
KS ci ratio: 1.216718e-01	ci left: 2.700029e-03	ci right 3.052492e-03	k: 1034	n:360000
OR6C4   360000 perm   113 sec   (3173 perm/sec)   p_kst 2.872222e-03   p_cons 5.722222e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.660285e-01	ci left: 5.085402e-04	ci right 6.670188e-04	k: 216	n:370000
KS ci ratio: 1.196643e-01	ci left: 2.718797e-03	ci right 3.067439e-03	k: 1069	n:370000
OR6C4   370000 perm   118 sec   (3138 perm/sec)   p_kst 2.889189e-03   p_cons 5.837838e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.606766e-01	ci left: 5.172788e-04	ci right 6.747093e-04	k: 225	n:380000
KS ci ratio: 1.180749e-01	ci left: 2.721296e-03	ci right 3.065301e-03	k: 1098	n:380000
OR6C4   380000 perm   122 sec   (3104 perm/sec)   p_kst 2.889474e-03   p_cons 5.921053e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.578403e-01	ci left: 5.160026e-04	ci right 6.710610e-04	k: 230	n:390000
KS ci ratio: 1.164955e-01	ci left: 2.726186e-03	ci right 3.065882e-03	k: 1128	n:390000
OR6C4   390000 perm   127 sec   (3070 perm/sec)   p_kst 2.892308e-03   p_cons 5.897436e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.545556e-01	ci left: 5.171395e-04	ci right 6.702455e-04	k: 236	n:400000
KS ci ratio: 1.152273e-01	ci left: 2.718719e-03	ci right 3.053546e-03	k: 1153	n:400000
OR6C4   400000 perm   132 sec   (3036 perm/sec)   p_kst 2.882500e-03   p_cons 5.900000e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.508773e-01	ci left: 5.205183e-04	ci right 6.720501e-04	k: 243	n:410000
KS ci ratio: 1.139511e-01	ci left: 2.714006e-03	ci right 3.044301e-03	k: 1179	n:410000
OR6C4   410000 perm   136 sec   (3006 perm/sec)   p_kst 2.875610e-03   p_cons 5.926829e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.444478e-01	ci left: 5.371574e-04	ci right 6.889174e-04	k: 256	n:420000
KS ci ratio: 1.123434e-01	ci left: 2.728049e-03	ci right 3.055059e-03	k: 1213	n:420000
OR6C4   420000 perm   141 sec   (2977 perm/sec)   p_kst 2.888095e-03   p_cons 6.095238e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.407292e-01	ci left: 5.421394e-04	ci right 6.926291e-04	k: 264	n:430000
KS ci ratio: 1.111598e-01	ci left: 2.723381e-03	ci right 3.046166e-03	k: 1239	n:430000
OR6C4   430000 perm   146 sec   (2950 perm/sec)   p_kst 2.881395e-03   p_cons 6.139535e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.384901e-01	ci left: 5.404994e-04	ci right 6.889322e-04	k: 269	n:440000
KS ci ratio: 1.094935e-01	ci left: 2.745468e-03	ci right 3.065679e-03	k: 1277	n:440000
OR6C4   440000 perm   151 sec   (2921 perm/sec)   p_kst 2.902273e-03   p_cons 6.113636e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.363124e-01	ci left: 5.389385e-04	ci right 6.853935e-04	k: 274	n:450000
KS ci ratio: 1.080236e-01	ci left: 2.760121e-03	ci right 3.077444e-03	k: 1312	n:450000
OR6C4   450000 perm   155 sec   (2894 perm/sec)   p_kst 2.915556e-03   p_cons 6.088889e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.346128e-01	ci left: 5.354050e-04	ci right 6.797015e-04	k: 278	n:460000
KS ci ratio: 1.069701e-01	ci left: 2.755120e-03	ci right 3.068585e-03	k: 1338	n:460000
OR6C4   460000 perm   160 sec   (2866 perm/sec)   p_kst 2.908696e-03   p_cons 6.043478e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.333623e-01	ci left: 5.300221e-04	ci right 6.719965e-04	k: 281	n:470000
KS ci ratio: 1.059857e-01	ci left: 2.748274e-03	ci right 3.057904e-03	k: 1363	n:470000
OR6C4   470000 perm   166 sec   (2838 perm/sec)   p_kst 2.900000e-03   p_cons 5.978723e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.317252e-01	ci left: 5.268277e-04	ci right 6.668147e-04	k: 285	n:480000
KS ci ratio: 1.050660e-01	ci left: 2.739698e-03	ci right 3.045518e-03	k: 1387	n:480000
OR6C4   480000 perm   171 sec   (2811 perm/sec)   p_kst 2.889583e-03   p_cons 5.937500e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.305200e-01	ci left: 5.218439e-04	ci right 6.596828e-04	k: 288	n:490000
KS ci ratio: 1.040589e-01	ci left: 2.737447e-03	ci right 3.039907e-03	k: 1414	n:490000
OR6C4   490000 perm   176 sec   (2785 perm/sec)   p_kst 2.885714e-03   p_cons 5.877551e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.289415e-01	ci left: 5.189466e-04	ci right 6.549489e-04	k: 292	n:500000
KS ci ratio: 1.029373e-01	ci left: 2.743094e-03	ci right 3.042713e-03	k: 1445	n:500000
OR6C4   500000 perm   181 sec   (2756 perm/sec)   p_kst 2.890000e-03   p_cons 5.840000e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.251310e-01	ci left: 5.272642e-04	ci right 6.628274e-04	k: 302	n:510000
KS ci ratio: 1.019550e-01	ci left: 2.742803e-03	ci right 3.039360e-03	k: 1473	n:510000
OR6C4   510000 perm   187 sec   (2728 perm/sec)   p_kst 2.888235e-03   p_cons 5.921569e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.218595e-01	ci left: 5.334635e-04	ci right 6.683555e-04	k: 311	n:520000
KS ci ratio: 1.008321e-01	ci left: 2.751909e-03	ci right 3.045980e-03	k: 1506	n:520000
OR6C4   520000 perm   192 sec   (2702 perm/sec)   p_kst 2.896154e-03   p_cons 5.980769e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.201031e-01	ci left: 5.323100e-04	ci right 6.657004e-04	k: 316	n:530000
KS ci ratio: 9.968063e-02	ci left: 2.764369e-03	ci right 3.056201e-03	k: 1541	n:530000
OR6C4   530000 perm   198 sec   (2677 perm/sec)   p_kst 2.907547e-03   p_cons 5.962264e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.187278e-01	ci left: 5.294526e-04	ci right 6.611866e-04	k: 320	n:540000
KS ci ratio: 9.885103e-02	ci left: 2.760130e-03	ci right 3.048948e-03	k: 1567	n:540000
OR6C4   540000 perm   203 sec   (2654 perm/sec)   p_kst 2.901852e-03   p_cons 5.925926e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.173780e-01	ci left: 5.267017e-04	ci right 6.568344e-04	k: 324	n:550000
KS ci ratio: 9.816540e-02	ci left: 2.748959e-03	ci right 3.034499e-03	k: 1589	n:550000
OR6C4   550000 perm   209 sec   (2631 perm/sec)   p_kst 2.889091e-03   p_cons 5.890909e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.157251e-01	ci left: 5.257406e-04	ci right 6.545173e-04	k: 329	n:560000
KS ci ratio: 9.731238e-02	ci left: 2.748648e-03	ci right 3.031533e-03	k: 1617	n:560000
OR6C4   560000 perm   215 sec   (2607 perm/sec)   p_kst 2.887500e-03   p_cons 5.875000e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.125282e-01	ci left: 5.331204e-04	ci right 6.615175e-04	k: 339	n:570000
KS ci ratio: 9.648122e-02	ci left: 2.748359e-03	ci right 3.028661e-03	k: 1645	n:570000
OR6C4   570000 perm   221 sec   (2584 perm/sec)   p_kst 2.885965e-03   p_cons 5.947368e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.094694e-01	ci left: 5.402593e-04	ci right 6.682628e-04	k: 349	n:580000
KS ci ratio: 9.544256e-02	ci left: 2.761554e-03	ci right 3.040000e-03	k: 1681	n:580000
OR6C4   580000 perm   227 sec   (2560 perm/sec)   p_kst 2.898276e-03   p_cons 6.017241e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.082830e-01	ci left: 5.375273e-04	ci right 6.640702e-04	k: 353	n:590000
KS ci ratio: 9.457485e-02	ci left: 2.766042e-03	ci right 3.042265e-03	k: 1712	n:590000
OR6C4   590000 perm   232 sec   (2539 perm/sec)   p_kst 2.901695e-03   p_cons 5.983051e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.062535e-01	ci left: 5.396297e-04	ci right 6.652737e-04	k: 360	n:600000
KS ci ratio: 9.383837e-02	ci left: 2.763881e-03	ci right 3.037621e-03	k: 1739	n:600000
OR6C4   600000 perm   239 sec   (2515 perm/sec)   p_kst 2.898333e-03   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.054023e-01	ci left: 5.354478e-04	ci right 6.595389e-04	k: 363	n:610000
KS ci ratio: 9.314527e-02	ci left: 2.760197e-03	ci right 3.031443e-03	k: 1765	n:610000
OR6C4   610000 perm   245 sec   (2491 perm/sec)   p_kst 2.893443e-03   p_cons 5.950820e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.045616e-01	ci left: 5.314017e-04	ci right 6.539880e-04	k: 366	n:620000
KS ci ratio: 9.262294e-02	ci left: 2.747186e-03	ci right 3.015557e-03	k: 1785	n:620000
OR6C4   620000 perm   251 sec   (2469 perm/sec)   p_kst 2.879032e-03   p_cons 5.903226e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.015624e-01	ci left: 5.395396e-04	ci right 6.619539e-04	k: 377	n:630000
KS ci ratio: 9.210930e-02	ci left: 2.734592e-03	ci right 3.000171e-03	k: 1805	n:630000
OR6C4   630000 perm   257 sec   (2449 perm/sec)   p_kst 2.865079e-03   p_cons 5.984127e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.005046e-01	ci left: 5.370446e-04	ci right 6.581751e-04	k: 381	n:640000
KS ci ratio: 9.120424e-02	ci left: 2.746825e-03	ci right 3.010832e-03	k: 1841	n:640000
OR6C4   640000 perm   264 sec   (2429 perm/sec)   p_kst 2.876563e-03   p_cons 5.953125e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.997224e-01	ci left: 5.331664e-04	ci right 6.528958e-04	k: 384	n:650000
KS ci ratio: 9.042197e-02	ci left: 2.752679e-03	ci right 3.014859e-03	k: 1873	n:650000
OR6C4   650000 perm   270 sec   (2410 perm/sec)   p_kst 2.881538e-03   p_cons 5.907692e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.986932e-01	ci left: 5.308464e-04	ci right 6.493661e-04	k: 388	n:660000
KS ci ratio: 8.982507e-02	ci left: 2.747997e-03	ci right 3.007912e-03	k: 1898	n:660000
OR6C4   660000 perm   277 sec   (2385 perm/sec)   p_kst 2.875758e-03   p_cons 5.878788e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.971783e-01	ci left: 5.314348e-04	ci right 6.490725e-04	k: 394	n:670000
KS ci ratio: 8.905435e-02	ci left: 2.755134e-03	ci right 3.013373e-03	k: 1931	n:670000
OR6C4   670000 perm   283 sec   (2364 perm/sec)   p_kst 2.882090e-03   p_cons 5.880597e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.956976e-01	ci left: 5.320091e-04	ci right 6.487842e-04	k: 400	n:680000
KS ci ratio: 8.841601e-02	ci left: 2.754880e-03	ci right 3.011148e-03	k: 1959	n:680000
OR6C4   680000 perm   290 sec   (2344 perm/sec)   p_kst 2.880882e-03   p_cons 5.882353e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.947291e-01	ci left: 5.298126e-04	ci right 6.454617e-04	k: 404	n:690000
KS ci ratio: 8.763661e-02	ci left: 2.764563e-03	ci right 3.019349e-03	k: 1994	n:690000
OR6C4   690000 perm   297 sec   (2325 perm/sec)   p_kst 2.889855e-03   p_cons 5.855072e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.937748e-01	ci left: 5.276801e-04	ci right 6.422328e-04	k: 408	n:700000
KS ci ratio: 8.702807e-02	ci left: 2.764196e-03	ci right 3.017089e-03	k: 2022	n:700000
OR6C4   700000 perm   304 sec   (2305 perm/sec)   p_kst 2.888571e-03   p_cons 5.828571e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.916769e-01	ci left: 5.323126e-04	ci right 6.464740e-04	k: 417	n:710000
KS ci ratio: 8.624247e-02	ci left: 2.776248e-03	ci right 3.027835e-03	k: 2059	n:710000
OR6C4   710000 perm   311 sec   (2285 perm/sec)   p_kst 2.900000e-03   p_cons 5.873239e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.898683e-01	ci left: 5.354999e-04	ci right 6.491363e-04	k: 425	n:720000
KS ci ratio: 8.572411e-02	ci left: 2.771664e-03	ci right 3.021251e-03	k: 2084	n:720000
OR6C4   720000 perm   318 sec   (2266 perm/sec)   p_kst 2.894444e-03   p_cons 5.902778e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.883272e-01	ci left: 5.372995e-04	ci right 6.502864e-04	k: 432	n:730000
KS ci ratio: 8.509374e-02	ci left: 2.775255e-03	ci right 3.023236e-03	k: 2115	n:730000
OR6C4   730000 perm   325 sec   (2248 perm/sec)   p_kst 2.897260e-03   p_cons 5.917808e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.872493e-01	ci left: 5.364777e-04	ci right 6.485728e-04	k: 437	n:740000
KS ci ratio: 8.435893e-02	ci left: 2.786693e-03	ci right 3.033440e-03	k: 2152	n:740000
OR6C4   740000 perm   332 sec   (2230 perm/sec)   p_kst 2.908108e-03   p_cons 5.905405e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.859798e-01	ci left: 5.369510e-04	ci right 6.482984e-04	k: 443	n:750000
KS ci ratio: 8.362369e-02	ci left: 2.799140e-03	ci right 3.044724e-03	k: 2190	n:750000
OR6C4   750000 perm   339 sec   (2212 perm/sec)   p_kst 2.920000e-03   p_cons 5.906667e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.849415e-01	ci left: 5.361593e-04	ci right 6.466523e-04	k: 448	n:760000
KS ci ratio: 8.305695e-02	ci left: 2.800961e-03	ci right 3.044958e-03	k: 2220	n:760000
OR6C4   760000 perm   346 sec   (2194 perm/sec)   p_kst 2.921053e-03   p_cons 5.894737e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.841234e-01	ci left: 5.341510e-04	ci right 6.436888e-04	k: 452	n:770000
KS ci ratio: 8.248321e-02	ci left: 2.804011e-03	ci right 3.046506e-03	k: 2251	n:770000
OR6C4   770000 perm   354 sec   (2176 perm/sec)   p_kst 2.923377e-03   p_cons 5.870130e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.829160e-01	ci left: 5.346419e-04	ci right 6.434816e-04	k: 458	n:780000
KS ci ratio: 8.192120e-02	ci left: 2.806989e-03	ci right 3.048008e-03	k: 2282	n:780000
OR6C4   780000 perm   361 sec   (2159 perm/sec)   p_kst 2.925641e-03   p_cons 5.871795e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.815368e-01	ci left: 5.363309e-04	ci right 6.446007e-04	k: 465	n:790000
KS ci ratio: 8.135290e-02	ci left: 2.811137e-03	ci right 3.050758e-03	k: 2314	n:790000
OR6C4   790000 perm   369 sec   (2143 perm/sec)   p_kst 2.929114e-03   p_cons 5.886076e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.807629e-01	ci left: 5.344000e-04	ci right 6.417698e-04	k: 469	n:800000
KS ci ratio: 8.088272e-02	ci left: 2.809063e-03	ci right 3.047059e-03	k: 2341	n:800000
OR6C4   800000 perm   376 sec   (2126 perm/sec)   p_kst 2.926250e-03   p_cons 5.862500e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.794315e-01	ci left: 5.360549e-04	ci right 6.428778e-04	k: 476	n:810000
KS ci ratio: 8.028475e-02	ci left: 2.816723e-03	ci right 3.053521e-03	k: 2376	n:810000
OR6C4   810000 perm   384 sec   (2110 perm/sec)   p_kst 2.933333e-03   p_cons 5.876543e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.790569e-01	ci left: 5.318471e-04	ci right 6.375863e-04	k: 478	n:820000
KS ci ratio: 7.986606e-02	ci left: 2.812250e-03	ci right 3.047381e-03	k: 2401	n:820000
OR6C4   820000 perm   392 sec   (2094 perm/sec)   p_kst 2.928049e-03   p_cons 5.829268e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.781298e-01	ci left: 5.311941e-04	ci right 6.361977e-04	k: 483	n:830000
KS ci ratio: 7.919249e-02	ci left: 2.826783e-03	ci right 3.061044e-03	k: 2442	n:830000
OR6C4   830000 perm   400 sec   (2077 perm/sec)   p_kst 2.942169e-03   p_cons 5.819277e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.770358e-01	ci left: 5.316958e-04	ci right 6.360839e-04	k: 489	n:840000
KS ci ratio: 7.866281e-02	ci left: 2.831642e-03	ci right 3.064664e-03	k: 2475	n:840000
OR6C4   840000 perm   407 sec   (2062 perm/sec)   p_kst 2.946429e-03   p_cons 5.821429e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.763178e-01	ci left: 5.299382e-04	ci right 6.335144e-04	k: 493	n:850000
KS ci ratio: 7.811241e-02	ci left: 2.838698e-03	ci right 3.070592e-03	k: 2510	n:850000
OR6C4   850000 perm   415 sec   (2046 perm/sec)   p_kst 2.952941e-03   p_cons 5.800000e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.756084e-01	ci left: 5.282224e-04	ci right 6.310038e-04	k: 497	n:860000
KS ci ratio: 7.771128e-02	ci left: 2.835333e-03	ci right 3.065709e-03	k: 2536	n:860000
OR6C4   860000 perm   424 sec   (2030 perm/sec)   p_kst 2.948837e-03   p_cons 5.779070e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.749076e-01	ci left: 5.265469e-04	ci right 6.285501e-04	k: 501	n:870000
KS ci ratio: 7.731626e-02	ci left: 2.832049e-03	ci right 3.060936e-03	k: 2562	n:870000
OR6C4   870000 perm   432 sec   (2015 perm/sec)   p_kst 2.944828e-03   p_cons 5.758621e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.747341e-01	ci left: 5.216499e-04	ci right 6.225937e-04	k: 502	n:880000
KS ci ratio: 7.679346e-02	ci left: 2.838873e-03	ci right 3.066691e-03	k: 2597	n:880000
OR6C4   880000 perm   440 sec   (2001 perm/sec)   p_kst 2.951136e-03   p_cons 5.704545e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.735307e-01	ci left: 5.233111e-04	ci right 6.238059e-04	k: 509	n:890000
KS ci ratio: 7.639761e-02	ci left: 2.836732e-03	ci right 3.063152e-03	k: 2624	n:890000
OR6C4   890000 perm   448 sec   (1987 perm/sec)   p_kst 2.948315e-03   p_cons 5.719101e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.733613e-01	ci left: 5.185593e-04	ci right 6.180341e-04	k: 510	n:900000
KS ci ratio: 7.590741e-02	ci left: 2.842271e-03	ci right 3.067614e-03	k: 2658	n:900000
OR6C4   900000 perm   456 sec   (1974 perm/sec)   p_kst 2.953333e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.728549e-01	ci left: 5.160147e-04	ci right 6.146820e-04	k: 513	n:910000
KS ci ratio: 7.549685e-02	ci left: 2.842302e-03	ci right 3.066375e-03	k: 2687	n:910000
OR6C4   910000 perm   464 sec   (1961 perm/sec)   p_kst 2.952747e-03   p_cons 5.637363e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.718547e-01	ci left: 5.166462e-04	ci right 6.148035e-04	k: 519	n:920000
KS ci ratio: 7.505134e-02	ci left: 2.845536e-03	ci right 3.068482e-03	k: 2719	n:920000
OR6C4   920000 perm   473 sec   (1947 perm/sec)   p_kst 2.955435e-03   p_cons 5.641304e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.710344e-01	ci left: 5.162365e-04	ci right 6.137995e-04	k: 524	n:930000
KS ci ratio: 7.462722e-02	ci left: 2.847648e-03	ci right 3.069444e-03	k: 2750	n:930000
OR6C4   930000 perm   481 sec   (1934 perm/sec)   p_kst 2.956989e-03   p_cons 5.634409e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.707099e-01	ci left: 5.127813e-04	ci right 6.094884e-04	k: 526	n:940000
KS ci ratio: 7.426378e-02	ci left: 2.845543e-03	ci right 3.066049e-03	k: 2777	n:940000
OR6C4   940000 perm   490 sec   (1920 perm/sec)   p_kst 2.954255e-03   p_cons 5.595745e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.695872e-01	ci left: 5.144382e-04	ci right 6.107546e-04	k: 533	n:950000
KS ci ratio: 7.387918e-02	ci left: 2.845550e-03	ci right 3.064866e-03	k: 2806	n:950000
OR6C4   950000 perm   498 sec   (1907 perm/sec)   p_kst 2.953684e-03   p_cons 5.610526e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.689557e-01	ci left: 5.130696e-04	ci right 6.087356e-04	k: 537	n:960000
KS ci ratio: 7.357860e-02	ci left: 2.839425e-03	ci right 3.057341e-03	k: 2829	n:960000
OR6C4   960000 perm   507 sec   (1893 perm/sec)   p_kst 2.946875e-03   p_cons 5.593750e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.681761e-01	ci left: 5.127174e-04	ci right 6.078319e-04	k: 542	n:970000
KS ci ratio: 7.316601e-02	ci left: 2.842538e-03	ci right 3.059416e-03	k: 2861	n:970000
OR6C4   970000 perm   516 sec   (1880 perm/sec)   p_kst 2.949485e-03   p_cons 5.587629e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.671024e-01	ci left: 5.143288e-04	ci right 6.090718e-04	k: 549	n:980000
KS ci ratio: 7.264707e-02	ci left: 2.854607e-03	ci right 3.070796e-03	k: 2902	n:980000
OR6C4   980000 perm   525 sec   (1867 perm/sec)   p_kst 2.961224e-03   p_cons 5.602041e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.656033e-01	ci left: 5.188142e-04	ci right 6.134406e-04	k: 559	n:990000
KS ci ratio: 7.224987e-02	ci left: 2.857510e-03	ci right 3.072687e-03	k: 2934	n:990000
OR6C4   990000 perm   534 sec   (1854 perm/sec)   p_kst 2.963636e-03   p_cons 5.646465e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.650151e-01	ci left: 5.174605e-04	ci right 6.114715e-04	k: 563	n:1000000
KS ci ratio: 7.198088e-02	ci left: 2.850538e-03	ci right 3.064357e-03	k: 2956	n:1000000
OR6C4   1000000 perm   543 sec   (1842 perm/sec)   p_kst 2.956000e-03   p_cons 5.630000e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.641443e-01	ci left: 5.180331e-04	ci right 6.116024e-04	k: 569	n:1010000
KS ci ratio: 7.159444e-02	ci left: 2.853429e-03	ci right 3.066269e-03	k: 2988	n:1010000
OR6C4   1010000 perm   552 sec   (1829 perm/sec)   p_kst 2.958416e-03   p_cons 5.633663e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.638574e-01	ci left: 5.148346e-04	ci right 6.076476e-04	k: 571	n:1020000
KS ci ratio: 7.127335e-02	ci left: 2.851452e-03	ci right 3.063151e-03	k: 3015	n:1020000
OR6C4   1020000 perm   561 sec   (1817 perm/sec)   p_kst 2.955882e-03   p_cons 5.598039e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.628638e-01	ci left: 5.163545e-04	ci right 6.088218e-04	k: 578	n:1030000
KS ci ratio: 7.087482e-02	ci left: 2.856192e-03	ci right 3.067007e-03	k: 3049	n:1030000
OR6C4   1030000 perm   571 sec   (1805 perm/sec)   p_kst 2.960194e-03   p_cons 5.611650e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.620264e-01	ci left: 5.169242e-04	ci right 6.089713e-04	k: 584	n:1040000
KS ci ratio: 7.058628e-02	ci left: 2.852341e-03	ci right 3.061981e-03	k: 3074	n:1040000
OR6C4   1040000 perm   580 sec   (1793 perm/sec)   p_kst 2.955769e-03   p_cons 5.615385e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.609296e-01	ci left: 5.193124e-04	ci right 6.110981e-04	k: 592	n:1050000
KS ci ratio: 7.030124e-02	ci left: 2.848566e-03	ci right 3.057048e-03	k: 3099	n:1050000
OR6C4   1050000 perm   590 sec   (1781 perm/sec)   p_kst 2.951429e-03   p_cons 5.638095e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.594570e-01	ci left: 5.243747e-04	ci right 6.161259e-04	k: 603	n:1060000
KS ci ratio: 7.007587e-02	ci left: 2.840229e-03	ci right 3.047407e-03	k: 3119	n:1060000
OR6C4   1060000 perm   599 sec   (1770 perm/sec)   p_kst 2.942453e-03   p_cons 5.688679e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.585409e-01	ci left: 5.257558e-04	ci right 6.171698e-04	k: 610	n:1070000
KS ci ratio: 6.973025e-02	ci left: 2.842151e-03	ci right 3.048405e-03	k: 3150	n:1070000
OR6C4   1070000 perm   609 sec   (1758 perm/sec)   p_kst 2.943925e-03   p_cons 5.700935e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.582823e-01	ci left: 5.226660e-04	ci right 6.133806e-04	k: 612	n:1080000
KS ci ratio: 6.945541e-02	ci left: 2.838580e-03	ci right 3.043730e-03	k: 3175	n:1080000
OR6C4   1080000 perm   618 sec   (1747 perm/sec)   p_kst 2.939815e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.571328e-01	ci left: 5.258020e-04	ci right 6.163356e-04	k: 621	n:1090000
KS ci ratio: 6.912967e-02	ci left: 2.839584e-03	ci right 3.043806e-03	k: 3205	n:1090000
OR6C4   1090000 perm   628 sec   (1736 perm/sec)   p_kst 2.940367e-03   p_cons 5.697248e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.567554e-01	ci left: 5.236421e-04	ci right 6.135669e-04	k: 624	n:1100000
KS ci ratio: 6.885116e-02	ci left: 2.836998e-03	ci right 3.040179e-03	k: 3231	n:1100000
OR6C4   1100000 perm   638 sec   (1725 perm/sec)   p_kst 2.937273e-03   p_cons 5.672727e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.560083e-01	ci left: 5.241185e-04	ci right 6.136561e-04	k: 630	n:1110000
KS ci ratio: 6.852327e-02	ci left: 2.838888e-03	ci right 3.041197e-03	k: 3262	n:1110000
OR6C4   1110000 perm   648 sec   (1714 perm/sec)   p_kst 2.938739e-03   p_cons 5.675676e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.551500e-01	ci left: 5.254456e-04	ci right 6.146701e-04	k: 637	n:1120000
KS ci ratio: 6.821040e-02	ci left: 2.839868e-03	ci right 3.041287e-03	k: 3292	n:1120000
OR6C4   1120000 perm   658 sec   (1703 perm/sec)   p_kst 2.939286e-03   p_cons 5.687500e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.544255e-01	ci left: 5.258997e-04	ci right 6.147457e-04	k: 643	n:1130000
KS ci ratio: 6.791204e-02	ci left: 2.839964e-03	ci right 3.040474e-03	k: 3321	n:1130000
OR6C4   1130000 perm   668 sec   (1692 perm/sec)   p_kst 2.938938e-03   p_cons 5.690265e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.537111e-01	ci left: 5.263468e-04	ci right 6.148191e-04	k: 649	n:1140000
KS ci ratio: 6.751659e-02	ci left: 2.848683e-03	ci right 3.048592e-03	k: 3360	n:1140000
OR6C4   1140000 perm   678 sec   (1682 perm/sec)   p_kst 2.947368e-03   p_cons 5.692982e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.526577e-01	ci left: 5.292961e-04	ci right 6.175986e-04	k: 658	n:1150000
KS ci ratio: 6.721725e-02	ci left: 2.849560e-03	ci right 3.048609e-03	k: 3390	n:1150000
OR6C4   1150000 perm   688 sec   (1672 perm/sec)   p_kst 2.947826e-03   p_cons 5.721739e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.523116e-01	ci left: 5.272207e-04	ci right 6.149594e-04	k: 661	n:1160000
KS ci ratio: 6.695131e-02	ci left: 2.847880e-03	ci right 3.045994e-03	k: 3417	n:1160000
OR6C4   1160000 perm   698 sec   (1662 perm/sec)   p_kst 2.945690e-03   p_cons 5.698276e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.517397e-01	ci left: 5.268255e-04	ci right 6.141393e-04	k: 666	n:1170000
KS ci ratio: 6.664001e-02	ci left: 2.850433e-03	ci right 3.047767e-03	k: 3449	n:1170000
OR6C4   1170000 perm   708 sec   (1651 perm/sec)   p_kst 2.947863e-03   p_cons 5.692308e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.512868e-01	ci left: 5.256221e-04	ci right 6.124530e-04	k: 670	n:1180000
KS ci ratio: 6.636170e-02	ci left: 2.850444e-03	ci right 3.046923e-03	k: 3478	n:1180000
OR6C4   1180000 perm   719 sec   (1642 perm/sec)   p_kst 2.947458e-03   p_cons 5.677966e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.509499e-01	ci left: 5.236308e-04	ci right 6.099226e-04	k: 673	n:1190000
KS ci ratio: 6.606796e-02	ci left: 2.852110e-03	ci right 3.047801e-03	k: 3509	n:1190000
OR6C4   1190000 perm   729 sec   (1633 perm/sec)   p_kst 2.948739e-03   p_cons 5.655462e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.497327e-01	ci left: 5.280891e-04	ci right 6.143511e-04	k: 684	n:1200000
KS ci ratio: 6.585273e-02	ci left: 2.847193e-03	ci right 3.041885e-03	k: 3532	n:1200000
OR6C4   1200000 perm   739 sec   (1624 perm/sec)   p_kst 2.943333e-03   p_cons 5.700000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.490812e-01	ci left: 5.284981e-04	ci right 6.144177e-04	k: 690	n:1210000
KS ci ratio: 6.553801e-02	ci left: 2.851300e-03	ci right 3.045306e-03	k: 3566	n:1210000
OR6C4   1210000 perm   749 sec   (1615 perm/sec)   p_kst 2.947107e-03   p_cons 5.702479e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.484381e-01	ci left: 5.289011e-04	ci right 6.144824e-04	k: 696	n:1220000
KS ci ratio: 6.533703e-02	ci left: 2.845666e-03	ci right 3.038673e-03	k: 3588	n:1220000
OR6C4   1220000 perm   760 sec   (1605 perm/sec)   p_kst 2.940984e-03   p_cons 5.704918e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.481198e-01	ci left: 5.269496e-04	ci right 6.120162e-04	k: 699	n:1230000
KS ci ratio: 6.501162e-02	ci left: 2.851322e-03	ci right 3.043713e-03	k: 3624	n:1230000
OR6C4   1230000 perm   771 sec   (1596 perm/sec)   p_kst 2.946341e-03   p_cons 5.682927e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.473847e-01	ci left: 5.281365e-04	ci right 6.129342e-04	k: 706	n:1240000
KS ci ratio: 6.483326e-02	ci left: 2.844195e-03	ci right 3.035558e-03	k: 3644	n:1240000
OR6C4   1240000 perm   782 sec   (1586 perm/sec)   p_kst 2.938710e-03   p_cons 5.693548e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.468663e-01	ci left: 5.277641e-04	ci right 6.121779e-04	k: 711	n:1250000
KS ci ratio: 6.444508e-02	ci left: 2.856073e-03	ci right 3.047042e-03	k: 3688	n:1250000
OR6C4   1250000 perm   793 sec   (1577 perm/sec)   p_kst 2.950400e-03   p_cons 5.688000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.466607e-01	ci left: 5.251045e-04	ci right 6.089650e-04	k: 713	n:1260000
KS ci ratio: 6.416731e-02	ci left: 2.858394e-03	ci right 3.048664e-03	k: 3720	n:1260000
OR6C4   1260000 perm   804 sec   (1568 perm/sec)   p_kst 2.952381e-03   p_cons 5.658730e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.460483e-01	ci left: 5.255212e-04	ci right 6.090672e-04	k: 719	n:1270000
KS ci ratio: 6.399580e-02	ci left: 2.851382e-03	ci right 3.040660e-03	k: 3740	n:1270000
OR6C4   1270000 perm   815 sec   (1559 perm/sec)   p_kst 2.944882e-03   p_cons 5.661417e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.453434e-01	ci left: 5.266850e-04	ci right 6.099768e-04	k: 726	n:1280000
KS ci ratio: 6.376616e-02	ci left: 2.849863e-03	ci right 3.038335e-03	k: 3767	n:1280000
OR6C4   1280000 perm   826 sec   (1550 perm/sec)   p_kst 2.942969e-03   p_cons 5.671875e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.448462e-01	ci left: 5.263374e-04	ci right 6.092649e-04	k: 731	n:1290000
KS ci ratio: 6.347192e-02	ci left: 2.854471e-03	ci right 3.042345e-03	k: 3802	n:1290000
OR6C4   1290000 perm   837 sec   (1541 perm/sec)   p_kst 2.947287e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.445504e-01	ci left: 5.245128e-04	ci right 6.069695e-04	k: 734	n:1300000
KS ci ratio: 6.323958e-02	ci left: 2.853711e-03	ci right 3.040822e-03	k: 3830	n:1300000
OR6C4   1300000 perm   848 sec   (1532 perm/sec)   p_kst 2.946154e-03   p_cons 5.646154e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.440613e-01	ci left: 5.241879e-04	ci right 6.062907e-04	k: 739	n:1310000
KS ci ratio: 6.297704e-02	ci left: 2.855969e-03	ci right 3.042423e-03	k: 3862	n:1310000
OR6C4   1310000 perm   860 sec   (1523 perm/sec)   p_kst 2.948092e-03   p_cons 5.641221e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.433847e-01	ci left: 5.253291e-04	ci right 6.071911e-04	k: 746	n:1320000
KS ci ratio: 6.274199e-02	ci left: 2.855957e-03	ci right 3.041689e-03	k: 3891	n:1320000
OR6C4   1320000 perm   871 sec   (1515 perm/sec)   p_kst 2.947727e-03   p_cons 5.651515e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.425284e-01	ci left: 5.279042e-04	ci right 6.096345e-04	k: 755	n:1330000
KS ci ratio: 6.255757e-02	ci left: 2.851506e-03	ci right 3.036383e-03	k: 3914	n:1330000
OR6C4   1330000 perm   883 sec   (1506 perm/sec)   p_kst 2.942857e-03   p_cons 5.676692e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.422466e-01	ci left: 5.261236e-04	ci right 6.074035e-04	k: 758	n:1340000
KS ci ratio: 6.229549e-02	ci left: 2.854469e-03	ci right 3.038735e-03	k: 3947	n:1340000
OR6C4   1340000 perm   894 sec   (1498 perm/sec)   p_kst 2.945522e-03   p_cons 5.656716e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.416877e-01	ci left: 5.265130e-04	ci right 6.075065e-04	k: 764	n:1350000
KS ci ratio: 6.207579e-02	ci left: 2.853743e-03	ci right 3.037289e-03	k: 3975	n:1350000
OR6C4   1350000 perm   906 sec   (1491 perm/sec)   p_kst 2.944444e-03   p_cons 5.659259e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.414108e-01	ci left: 5.247693e-04	ci right 6.053235e-04	k: 767	n:1360000
KS ci ratio: 6.185839e-02	ci left: 2.853028e-03	ci right 3.035863e-03	k: 4003	n:1360000
OR6C4   1360000 perm   917 sec   (1483 perm/sec)   p_kst 2.943382e-03   p_cons 5.639706e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.406799e-01	ci left: 5.265723e-04	ci right 6.069504e-04	k: 775	n:1370000
KS ci ratio: 6.166628e-02	ci left: 2.850170e-03	ci right 3.032234e-03	k: 4028	n:1370000
OR6C4   1370000 perm   929 sec   (1475 perm/sec)   p_kst 2.940146e-03   p_cons 5.656934e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.400496e-01	ci left: 5.276509e-04	ci right 6.078026e-04	k: 782	n:1380000
KS ci ratio: 6.138489e-02	ci left: 2.855916e-03	ci right 3.037485e-03	k: 4065	n:1380000
OR6C4   1380000 perm   941 sec   (1467 perm/sec)   p_kst 2.945652e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.397822e-01	ci left: 5.259375e-04	ci right 6.056638e-04	k: 785	n:1390000
KS ci ratio: 6.122717e-02	ci left: 2.850245e-03	ci right 3.030972e-03	k: 4086	n:1390000
OR6C4   1390000 perm   953 sec   (1459 perm/sec)   p_kst 2.939568e-03   p_cons 5.647482e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.394279e-01	ci left: 5.249382e-04	ci right 6.042945e-04	k: 789	n:1400000
KS ci ratio: 6.104830e-02	ci left: 2.846767e-03	ci right 3.026727e-03	k: 4110	n:1400000
OR6C4   1400000 perm   965 sec   (1451 perm/sec)   p_kst 2.935714e-03   p_cons 5.635714e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.391641e-01	ci left: 5.232687e-04	ci right 6.022105e-04	k: 792	n:1410000
KS ci ratio: 6.084149e-02	ci left: 2.846133e-03	ci right 3.025422e-03	k: 4138	n:1410000
OR6C4   1410000 perm   977 sec   (1443 perm/sec)   p_kst 2.934752e-03   p_cons 5.617021e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.386406e-01	ci left: 5.236622e-04	ci right 6.023417e-04	k: 798	n:1420000
KS ci ratio: 6.062947e-02	ci left: 2.846202e-03	ci right 3.024849e-03	k: 4167	n:1420000
OR6C4   1420000 perm   989 sec   (1435 perm/sec)   p_kst 2.934507e-03   p_cons 5.619718e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.374413e-01	ci left: 5.294524e-04	ci right 6.082575e-04	k: 812	n:1430000
KS ci ratio: 6.047748e-02	ci left: 2.840761e-03	ci right 3.018604e-03	k: 4188	n:1430000
OR6C4   1430000 perm   1002 sec   (1428 perm/sec)   p_kst 2.928671e-03   p_cons 5.678322e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.367699e-01	ci left: 5.311407e-04	ci right 6.097794e-04	k: 820	n:1440000
KS ci ratio: 6.026923e-02	ci left: 2.840869e-03	ci right 3.018084e-03	k: 4217	n:1440000
OR6C4   1440000 perm   1014 sec   (1420 perm/sec)   p_kst 2.928472e-03   p_cons 5.694444e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.364380e-01	ci left: 5.301420e-04	ci right 6.084269e-04	k: 824	n:1450000
KS ci ratio: 6.009150e-02	ci left: 2.838258e-03	ci right 3.014771e-03	k: 4242	n:1450000
OR6C4   1450000 perm   1026 sec   (1413 perm/sec)   p_kst 2.925517e-03   p_cons 5.682759e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.359445e-01	ci left: 5.304805e-04	ci right 6.085091e-04	k: 830	n:1460000
KS ci ratio: 5.995057e-02	ci left: 2.832311e-03	ci right 3.008026e-03	k: 4262	n:1460000
OR6C4   1460000 perm   1039 sec   (1406 perm/sec)   p_kst 2.919178e-03   p_cons 5.684932e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.356186e-01	ci left: 5.295004e-04	ci right 6.071831e-04	k: 834	n:1470000
KS ci ratio: 5.976864e-02	ci left: 2.830466e-03	ci right 3.005515e-03	k: 4288	n:1470000
OR6C4   1470000 perm   1051 sec   (1399 perm/sec)   p_kst 2.917007e-03   p_cons 5.673469e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.351340e-01	ci left: 5.298394e-04	ci right 6.072718e-04	k: 840	n:1480000
KS ci ratio: 5.953305e-02	ci left: 2.833972e-03	ci right 3.008523e-03	k: 4322	n:1480000
OR6C4   1480000 perm   1064 sec   (1391 perm/sec)   p_kst 2.920270e-03   p_cons 5.675676e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.345750e-01	ci left: 5.308230e-04	ci right 6.080525e-04	k: 847	n:1490000
KS ci ratio: 5.936173e-02	ci left: 2.831481e-03	ci right 3.005360e-03	k: 4347	n:1490000
OR6C4   1490000 perm   1076 sec   (1384 perm/sec)   p_kst 2.917450e-03   p_cons 5.684564e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.338663e-01	ci left: 5.330827e-04	ci right 6.102001e-04	k: 856	n:1500000
KS ci ratio: 5.911737e-02	ci left: 2.836249e-03	ci right 3.009679e-03	k: 4383	n:1500000
OR6C4   1500000 perm   1089 sec   (1377 perm/sec)   p_kst 2.922000e-03   p_cons 5.706667e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.334002e-01	ci left: 5.333931e-04	ci right 6.102653e-04	k: 862	n:1510000
KS ci ratio: 5.889604e-02	ci left: 2.838998e-03	ci right 3.011924e-03	k: 4416	n:1510000
OR6C4   1510000 perm   1102 sec   (1371 perm/sec)   p_kst 2.924503e-03   p_cons 5.708609e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.330922e-01	ci left: 5.324277e-04	ci right 6.089697e-04	k: 866	n:1520000
KS ci ratio: 5.867718e-02	ci left: 2.841712e-03	ci right 3.014138e-03	k: 4449	n:1520000
OR6C4   1520000 perm   1115 sec   (1364 perm/sec)   p_kst 2.926974e-03   p_cons 5.697368e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.324822e-01	ci left: 5.340029e-04	ci right 6.103918e-04	k: 874	n:1530000
KS ci ratio: 5.855251e-02	ci left: 2.835374e-03	ci right 3.007039e-03	k: 4468	n:1530000
OR6C4   1530000 perm   1128 sec   (1357 perm/sec)   p_kst 2.920261e-03   p_cons 5.712418e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.320303e-01	ci left: 5.343026e-04	ci right 6.104532e-04	k: 880	n:1540000
KS ci ratio: 5.838299e-02	ci left: 2.833599e-03	ci right 3.004642e-03	k: 4494	n:1540000
OR6C4   1540000 perm   1141 sec   (1350 perm/sec)   p_kst 2.918182e-03   p_cons 5.714286e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.318062e-01	ci left: 5.327270e-04	ci right 6.085141e-04	k: 883	n:1550000
KS ci ratio: 5.816334e-02	ci left: 2.836934e-03	ci right 3.007513e-03	k: 4528	n:1550000
OR6C4   1550000 perm   1154 sec   (1344 perm/sec)   p_kst 2.921290e-03   p_cons 5.696774e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.314351e-01	ci left: 5.324117e-04	ci right 6.079240e-04	k: 888	n:1560000
KS ci ratio: 5.795889e-02	ci left: 2.838963e-03	ci right 3.009044e-03	k: 4560	n:1560000
OR6C4   1560000 perm   1167 sec   (1337 perm/sec)   p_kst 2.923077e-03   p_cons 5.692308e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.307746e-01	ci left: 5.345651e-04	ci right 6.099722e-04	k: 897	n:1570000
KS ci ratio: 5.778814e-02	ci left: 2.837829e-03	ci right 3.007325e-03	k: 4587	n:1570000
OR6C4   1570000 perm   1180 sec   (1330 perm/sec)   p_kst 2.921656e-03   p_cons 5.713376e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.304121e-01	ci left: 5.342429e-04	ci right 6.093795e-04	k: 902	n:1580000
KS ci ratio: 5.762515e-02	ci left: 2.836087e-03	ci right 3.004984e-03	k: 4613	n:1580000
OR6C4   1580000 perm   1193 sec   (1324 perm/sec)   p_kst 2.919620e-03   p_cons 5.708861e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.304123e-01	ci left: 5.308828e-04	ci right 6.055470e-04	k: 902	n:1590000
KS ci ratio: 5.742011e-02	ci left: 2.838706e-03	ci right 3.007138e-03	k: 4646	n:1590000
OR6C4   1590000 perm   1207 sec   (1318 perm/sec)   p_kst 2.922013e-03   p_cons 5.672956e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.301245e-01	ci left: 5.299833e-04	ci right 6.043438e-04	k: 906	n:1600000
KS ci ratio: 5.718661e-02	ci left: 2.844374e-03	ci right 3.012433e-03	k: 4684	n:1600000
OR6C4   1600000 perm   1220 sec   (1312 perm/sec)   p_kst 2.927500e-03   p_cons 5.662500e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.298386e-01	ci left: 5.290952e-04	ci right 6.031553e-04	k: 910	n:1610000
KS ci ratio: 5.696804e-02	ci left: 2.848748e-03	ci right 3.016402e-03	k: 4720	n:1610000
OR6C4   1610000 perm   1233 sec   (1305 perm/sec)   p_kst 2.931677e-03   p_cons 5.652174e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.297676e-01	ci left: 5.264263e-04	ci right 6.000695e-04	k: 911	n:1620000
KS ci ratio: 5.685393e-02	ci left: 2.842725e-03	ci right 3.009677e-03	k: 4739	n:1620000
OR6C4   1620000 perm   1247 sec   (1299 perm/sec)   p_kst 2.925309e-03   p_cons 5.623457e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.295548e-01	ci left: 5.249775e-04	ci right 5.982883e-04	k: 914	n:1630000
KS ci ratio: 5.671063e-02	ci left: 2.839799e-03	ci right 3.006146e-03	k: 4763	n:1630000
OR6C4   1630000 perm   1260 sec   (1294 perm/sec)   p_kst 2.922086e-03   p_cons 5.607362e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.292726e-01	ci left: 5.241365e-04	ci right 5.971582e-04	k: 918	n:1640000
KS ci ratio: 5.651516e-02	ci left: 2.842321e-03	ci right 3.008223e-03	k: 4796	n:1640000
OR6C4   1640000 perm   1274 sec   (1288 perm/sec)   p_kst 2.924390e-03   p_cons 5.597561e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.289224e-01	ci left: 5.238923e-04	ci right 5.966672e-04	k: 923	n:1650000
KS ci ratio: 5.632170e-02	ci left: 2.844813e-03	ci right 3.010273e-03	k: 4829	n:1650000
OR6C4   1650000 perm   1287 sec   (1282 perm/sec)   p_kst 2.926667e-03   p_cons 5.593939e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.284367e-01	ci left: 5.248175e-04	ci right 5.974253e-04	k: 930	n:1660000
KS ci ratio: 5.618238e-02	ci left: 2.841930e-03	ci right 3.006800e-03	k: 4853	n:1660000
OR6C4   1660000 perm   1301 sec   (1276 perm/sec)   p_kst 2.923494e-03   p_cons 5.602410e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.280933e-01	ci left: 5.245728e-04	ci right 5.969379e-04	k: 935	n:1670000
KS ci ratio: 5.607869e-02	ci left: 2.835539e-03	ci right 2.999725e-03	k: 4871	n:1670000
OR6C4   1670000 perm   1315 sec   (1270 perm/sec)   p_kst 2.916766e-03   p_cons 5.598802e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.277525e-01	ci left: 5.243313e-04	ci right 5.964561e-04	k: 940	n:1680000
KS ci ratio: 5.587824e-02	ci left: 2.839203e-03	ci right 3.002995e-03	k: 4906	n:1680000
OR6C4   1680000 perm   1329 sec   (1264 perm/sec)   p_kst 2.920238e-03   p_cons 5.595238e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.276171e-01	ci left: 5.223743e-04	ci right 5.941480e-04	k: 942	n:1690000
KS ci ratio: 5.577054e-02	ci left: 2.833488e-03	ci right 2.996625e-03	k: 4925	n:1690000
OR6C4   1690000 perm   1343 sec   (1258 perm/sec)   p_kst 2.914201e-03   p_cons 5.573964e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.272130e-01	ci left: 5.227185e-04	ci right 5.942949e-04	k: 948	n:1700000
KS ci ratio: 5.556775e-02	ci left: 2.837702e-03	ci right 3.000469e-03	k: 4961	n:1700000
OR6C4   1700000 perm   1358 sec   (1252 perm/sec)   p_kst 2.918235e-03   p_cons 5.576471e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.270793e-01	ci left: 5.207940e-04	ci right 5.920263e-04	k: 950	n:1710000
KS ci ratio: 5.535050e-02	ci left: 2.843599e-03	ci right 3.006045e-03	k: 5000	n:1710000
OR6C4   1710000 perm   1372 sec   (1247 perm/sec)   p_kst 2.923977e-03   p_cons 5.555556e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.264162e-01	ci left: 5.233958e-04	ci right 5.945824e-04	k: 960	n:1720000
KS ci ratio: 5.526790e-02	ci left: 2.835666e-03	ci right 2.997410e-03	k: 5015	n:1720000
OR6C4   1720000 perm   1386 sec   (1241 perm/sec)   p_kst 2.915698e-03   p_cons 5.581395e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.260234e-01	ci left: 5.237291e-04	ci right 5.947232e-04	k: 966	n:1730000
KS ci ratio: 5.514721e-02	ci left: 2.831816e-03	ci right 2.992977e-03	k: 5037	n:1730000
OR6C4   1730000 perm   1400 sec   (1235 perm/sec)   p_kst 2.911561e-03   p_cons 5.583815e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.256989e-01	ci left: 5.235022e-04	ci right 5.942692e-04	k: 971	n:1740000
KS ci ratio: 5.506006e-02	ci left: 2.824610e-03	ci right 2.985098e-03	k: 5053	n:1740000
OR6C4   1740000 perm   1415 sec   (1230 perm/sec)   p_kst 2.904023e-03   p_cons 5.580460e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.251847e-01	ci left: 5.249388e-04	ci right 5.955882e-04	k: 979	n:1750000
KS ci ratio: 5.491903e-02	ci left: 2.823122e-03	ci right 2.983102e-03	k: 5079	n:1750000
OR6C4   1750000 perm   1429 sec   (1224 perm/sec)   p_kst 2.902286e-03   p_cons 5.594286e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.248666e-01	ci left: 5.247082e-04	ci right 5.951339e-04	k: 984	n:1760000
KS ci ratio: 5.475219e-02	ci left: 2.824454e-03	ci right 2.984007e-03	k: 5110	n:1760000
OR6C4   1760000 perm   1444 sec   (1219 perm/sec)   p_kst 2.903409e-03   p_cons 5.590909e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.245509e-01	ci left: 5.244805e-04	ci right 5.946845e-04	k: 989	n:1770000
KS ci ratio: 5.459219e-02	ci left: 2.825214e-03	ci right 2.984329e-03	k: 5140	n:1770000
OR6C4   1770000 perm   1458 sec   (1214 perm/sec)   p_kst 2.903955e-03   p_cons 5.587571e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.241752e-01	ci left: 5.247999e-04	ci right 5.948191e-04	k: 995	n:1780000
KS ci ratio: 5.443358e-02	ci left: 2.825966e-03	ci right 2.984647e-03	k: 5170	n:1780000
OR6C4   1780000 perm   1473 sec   (1209 perm/sec)   p_kst 2.904494e-03   p_cons 5.589888e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.238647e-01	ci left: 5.245747e-04	ci right 5.943760e-04	k: 1000	n:1790000
KS ci ratio: 5.428159e-02	ci left: 2.826159e-03	ci right 2.984394e-03	k: 5199	n:1790000
OR6C4   1790000 perm   1488 sec   (1203 perm/sec)   p_kst 2.904469e-03   p_cons 5.586592e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.234951e-01	ci left: 5.248906e-04	ci right 5.945104e-04	k: 1006	n:1800000
KS ci ratio: 5.409455e-02	ci left: 2.830188e-03	ci right 2.988085e-03	k: 5235	n:1800000
OR6C4   1800000 perm   1503 sec   (1198 perm/sec)   p_kst 2.908333e-03   p_cons 5.588889e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.230074e-01	ci left: 5.262743e-04	ci right 5.957818e-04	k: 1014	n:1810000
KS ci ratio: 5.394023e-02	ci left: 2.830902e-03	ci right 2.988375e-03	k: 5265	n:1810000
OR6C4   1810000 perm   1518 sec   (1193 perm/sec)   p_kst 2.908840e-03   p_cons 5.602210e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.227055e-01	ci left: 5.260455e-04	ci right 5.953400e-04	k: 1019	n:1820000
KS ci ratio: 5.377196e-02	ci left: 2.833235e-03	ci right 2.990331e-03	k: 5298	n:1820000
OR6C4   1820000 perm   1533 sec   (1187 perm/sec)   p_kst 2.910989e-03   p_cons 5.598901e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.223462e-01	ci left: 5.263492e-04	ci right 5.954659e-04	k: 1025	n:1830000
KS ci ratio: 5.367090e-02	ci left: 2.828535e-03	ci right 2.985066e-03	k: 5318	n:1830000
OR6C4   1830000 perm   1548 sec   (1182 perm/sec)   p_kst 2.906011e-03   p_cons 5.601093e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.222272e-01	ci left: 5.245423e-04	ci right 5.933499e-04	k: 1027	n:1840000
KS ci ratio: 5.351515e-02	ci left: 2.829785e-03	ci right 2.985917e-03	k: 5349	n:1840000
OR6C4   1840000 perm   1563 sec   (1177 perm/sec)   p_kst 2.907065e-03   p_cons 5.581522e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.217543e-01	ci left: 5.258993e-04	ci right 5.945987e-04	k: 1035	n:1850000
KS ci ratio: 5.336572e-02	ci left: 2.830488e-03	ci right 2.986209e-03	k: 5379	n:1850000
OR6C4   1850000 perm   1579 sec   (1172 perm/sec)   p_kst 2.907568e-03   p_cons 5.594595e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.215785e-01	ci left: 5.246357e-04	ci right 5.930640e-04	k: 1038	n:1860000
KS ci ratio: 5.324222e-02	ci left: 2.828532e-03	ci right 2.983775e-03	k: 5404	n:1860000
OR6C4   1860000 perm   1594 sec   (1167 perm/sec)   p_kst 2.905376e-03   p_cons 5.580645e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.208247e-01	ci left: 5.285713e-04	ci right 5.970550e-04	k: 1051	n:1870000
KS ci ratio: 5.308527e-02	ci left: 2.830291e-03	ci right 2.985158e-03	k: 5436	n:1870000
OR6C4   1870000 perm   1610 sec   (1162 perm/sec)   p_kst 2.906952e-03   p_cons 5.620321e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.205957e-01	ci left: 5.278232e-04	ci right 5.960710e-04	k: 1055	n:1880000
KS ci ratio: 5.294426e-02	ci left: 2.830458e-03	ci right 2.984910e-03	k: 5465	n:1880000
OR6C4   1880000 perm   1625 sec   (1157 perm/sec)   p_kst 2.906915e-03   p_cons 5.611702e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.200850e-01	ci left: 5.296490e-04	ci right 5.978224e-04	k: 1064	n:1890000
KS ci ratio: 5.284296e-02	ci left: 2.826446e-03	ci right 2.980375e-03	k: 5486	n:1890000
OR6C4   1890000 perm   1641 sec   (1152 perm/sec)   p_kst 2.902646e-03   p_cons 5.629630e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.195807e-01	ci left: 5.314563e-04	ci right 5.995546e-04	k: 1073	n:1900000
KS ci ratio: 5.268471e-02	ci left: 2.828709e-03	ci right 2.982286e-03	k: 5519	n:1900000
OR6C4   1900000 perm   1656 sec   (1147 perm/sec)   p_kst 2.904737e-03   p_cons 5.647368e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.193587e-01	ci left: 5.307055e-04	ci right 5.985724e-04	k: 1077	n:1910000
KS ci ratio: 5.254686e-02	ci left: 2.828883e-03	ci right 2.982055e-03	k: 5548	n:1910000
OR6C4   1910000 perm   1672 sec   (1142 perm/sec)   p_kst 2.904712e-03   p_cons 5.638743e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.190828e-01	ci left: 5.304679e-04	ci right 5.981367e-04	k: 1082	n:1920000
KS ci ratio: 5.240067e-02	ci left: 2.830083e-03	ci right 2.982881e-03	k: 5579	n:1920000
OR6C4   1920000 perm   1688 sec   (1138 perm/sec)   p_kst 2.905729e-03   p_cons 5.635417e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.187543e-01	ci left: 5.307357e-04	ci right 5.982387e-04	k: 1088	n:1930000
KS ci ratio: 5.227438e-02	ci left: 2.829226e-03	ci right 2.981598e-03	k: 5606	n:1930000
OR6C4   1930000 perm   1704 sec   (1133 perm/sec)   p_kst 2.904663e-03   p_cons 5.637306e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.184827e-01	ci left: 5.305008e-04	ci right 5.978088e-04	k: 1093	n:1940000
KS ci ratio: 5.216293e-02	ci left: 2.826852e-03	ci right 2.978762e-03	k: 5630	n:1940000
OR6C4   1940000 perm   1720 sec   (1128 perm/sec)   p_kst 2.902062e-03   p_cons 5.634021e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.182667e-01	ci left: 5.297708e-04	ci right 5.968551e-04	k: 1097	n:1950000
KS ci ratio: 5.199689e-02	ci left: 2.830576e-03	ci right 2.982188e-03	k: 5666	n:1950000
OR6C4   1950000 perm   1735 sec   (1124 perm/sec)   p_kst 2.905641e-03   p_cons 5.625641e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.179449e-01	ci left: 5.300387e-04	ci right 5.969615e-04	k: 1103	n:1960000
KS ci ratio: 5.185066e-02	ci left: 2.832249e-03	ci right 2.983511e-03	k: 5698	n:1960000
OR6C4   1960000 perm   1751 sec   (1119 perm/sec)   p_kst 2.907143e-03   p_cons 5.627551e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.176787e-01	ci left: 5.298114e-04	ci right 5.965441e-04	k: 1108	n:1970000
KS ci ratio: 5.174643e-02	ci left: 2.829396e-03	ci right 2.980193e-03	k: 5721	n:1970000
OR6C4   1970000 perm   1768 sec   (1114 perm/sec)   p_kst 2.904061e-03   p_cons 5.624365e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.172565e-01	ci left: 5.310573e-04	ci right 5.976903e-04	k: 1116	n:1980000
KS ci ratio: 5.163381e-02	ci left: 2.827569e-03	ci right 2.977931e-03	k: 5746	n:1980000
OR6C4   1980000 perm   1784 sec   (1110 perm/sec)   p_kst 2.902020e-03   p_cons 5.636364e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.168907e-01	ci left: 5.318032e-04	ci right 5.983074e-04	k: 1123	n:1990000
KS ci ratio: 5.149955e-02	ci left: 2.828241e-03	ci right 2.978236e-03	k: 5776	n:1990000
OR6C4   1990000 perm   1800 sec   (1105 perm/sec)   p_kst 2.902513e-03   p_cons 5.643216e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.166834e-01	ci left: 5.310858e-04	ci right 5.973743e-04	k: 1127	n:2000000
KS ci ratio: 5.138409e-02	ci left: 2.826933e-03	ci right 2.976512e-03	k: 5802	n:2000000
OR6C4   2000000 perm   1817 sec   (1101 perm/sec)   p_kst 2.901000e-03   p_cons 5.635000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.164771e-01	ci left: 5.303756e-04	ci right 5.964503e-04	k: 1131	n:2010000
KS ci ratio: 5.129147e-02	ci left: 2.823182e-03	ci right 2.972286e-03	k: 5823	n:2010000
OR6C4   2010000 perm   1833 sec   (1096 perm/sec)   p_kst 2.897015e-03   p_cons 5.626866e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.161696e-01	ci left: 5.306338e-04	ci right 5.965543e-04	k: 1137	n:2020000
KS ci ratio: 5.114672e-02	ci left: 2.825333e-03	ci right 2.974117e-03	k: 5856	n:2020000
OR6C4   2020000 perm   1850 sec   (1092 perm/sec)   p_kst 2.899010e-03   p_cons 5.628713e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.158645e-01	ci left: 5.308898e-04	ci right 5.966570e-04	k: 1143	n:2030000
KS ci ratio: 5.102926e-02	ci left: 2.824546e-03	ci right 2.972937e-03	k: 5883	n:2030000
OR6C4   2030000 perm   1866 sec   (1088 perm/sec)   p_kst 2.898030e-03   p_cons 5.630542e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.156122e-01	ci left: 5.306674e-04	ci right 5.962541e-04	k: 1148	n:2040000
KS ci ratio: 5.089534e-02	ci left: 2.825703e-03	ci right 2.973753e-03	k: 5914	n:2040000
OR6C4   2040000 perm   1883 sec   (1084 perm/sec)   p_kst 2.899020e-03   p_cons 5.627451e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.153115e-01	ci left: 5.309211e-04	ci right 5.963568e-04	k: 1154	n:2050000
KS ci ratio: 5.073253e-02	ci left: 2.830220e-03	ci right 2.978019e-03	k: 5952	n:2050000
OR6C4   2050000 perm   1899 sec   (1079 perm/sec)   p_kst 2.903415e-03   p_cons 5.629268e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.150131e-01	ci left: 5.311725e-04	ci right 5.964584e-04	k: 1160	n:2060000
KS ci ratio: 5.061365e-02	ci left: 2.829901e-03	ci right 2.977327e-03	k: 5980	n:2060000
OR6C4   2060000 perm   1916 sec   (1075 perm/sec)   p_kst 2.902913e-03   p_cons 5.631068e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.146188e-01	ci left: 5.323602e-04	ci right 5.975526e-04	k: 1168	n:2070000
KS ci ratio: 5.051669e-02	ci left: 2.827201e-03	ci right 2.974196e-03	k: 6003	n:2070000
OR6C4   2070000 perm   1933 sec   (1071 perm/sec)   p_kst 2.900000e-03   p_cons 5.642512e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.142772e-01	ci left: 5.330699e-04	ci right 5.981414e-04	k: 1175	n:2080000
KS ci ratio: 5.042867e-02	ci left: 2.823577e-03	ci right 2.970120e-03	k: 6024	n:2080000
OR6C4   2080000 perm   1950 sec   (1067 perm/sec)   p_kst 2.896154e-03   p_cons 5.649038e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.141802e-01	ci left: 5.314489e-04	ci right 5.962638e-04	k: 1177	n:2090000
KS ci ratio: 5.036618e-02	ci left: 2.817153e-03	ci right 2.963177e-03	k: 6039	n:2090000
OR6C4   2090000 perm   1967 sec   (1063 perm/sec)   p_kst 2.889474e-03   p_cons 5.631579e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.137464e-01	ci left: 5.330817e-04	ci right 5.978322e-04	k: 1186	n:2100000
KS ci ratio: 5.024986e-02	ci left: 2.816904e-03	ci right 2.962568e-03	k: 6067	n:2100000
OR6C4   2100000 perm   1984 sec   (1059 perm/sec)   p_kst 2.889048e-03   p_cons 5.647619e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.134600e-01	ci left: 5.333181e-04	ci right 5.979233e-04	k: 1192	n:2110000
KS ci ratio: 5.015496e-02	ci left: 2.814317e-03	ci right 2.959564e-03	k: 6090	n:2110000
OR6C4   2110000 perm   2001 sec   (1055 perm/sec)   p_kst 2.886256e-03   p_cons 5.649289e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.127999e-01	ci left: 5.372194e-04	ci right 6.018934e-04	k: 1206	n:2120000
KS ci ratio: 5.002369e-02	ci left: 2.815948e-03	ci right 2.960887e-03	k: 6122	n:2120000
OR6C4   2120000 perm   2018 sec   (1050 perm/sec)   p_kst 2.887736e-03   p_cons 5.688679e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.126135e-01	ci left: 5.365222e-04	ci right 6.009984e-04	k: 1210	n:2130000
KS ci ratio: 4.989345e-02	ci left: 2.817563e-03	ci right 2.962198e-03	k: 6154	n:2130000
OR6C4   2130000 perm   2036 sec   (1046 perm/sec)   p_kst 2.889202e-03   p_cons 5.680751e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.125671e-01	ci left: 5.344692e-04	ci right 5.986705e-04	k: 1211	n:2140000
KS ci ratio: 4.977229e-02	ci left: 2.818241e-03	ci right 2.962549e-03	k: 6184	n:2140000
OR6C4   2140000 perm   2053 sec   (1042 perm/sec)   p_kst 2.889720e-03   p_cons 5.658879e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.124282e-01	ci left: 5.333394e-04	ci right 5.973206e-04	k: 1214	n:2150000
KS ci ratio: 4.960001e-02	ci left: 2.824885e-03	ci right 2.969018e-03	k: 6227	n:2150000
OR6C4   2150000 perm   2071 sec   (1038 perm/sec)   p_kst 2.896279e-03   p_cons 5.646512e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.123820e-01	ci left: 5.313201e-04	ci right 5.950313e-04	k: 1215	n:2160000
KS ci ratio: 4.948493e-02	ci left: 2.825066e-03	ci right 2.968864e-03	k: 6256	n:2160000
OR6C4   2160000 perm   2089 sec   (1034 perm/sec)   p_kst 2.896296e-03   p_cons 5.625000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.123360e-01	ci left: 5.293195e-04	ci right 5.927630e-04	k: 1216	n:2170000
KS ci ratio: 4.938641e-02	ci left: 2.823426e-03	ci right 2.966846e-03	k: 6281	n:2170000
OR6C4   2170000 perm   2108 sec   (1030 perm/sec)   p_kst 2.894470e-03   p_cons 5.603687e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.120143e-01	ci left: 5.300124e-04	ci right 5.933450e-04	k: 1223	n:2180000
KS ci ratio: 4.927673e-02	ci left: 2.823160e-03	ci right 2.966239e-03	k: 6309	n:2180000
OR6C4   2180000 perm   2125 sec   (1026 perm/sec)   p_kst 2.894037e-03   p_cons 5.610092e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.116953e-01	ci left: 5.306991e-04	ci right 5.939213e-04	k: 1230	n:2190000
KS ci ratio: 4.911340e-02	ci left: 2.829211e-03	ci right 2.972109e-03	k: 6351	n:2190000
OR6C4   2190000 perm   2142 sec   (1022 perm/sec)   p_kst 2.900000e-03   p_cons 5.616438e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.114692e-01	ci left: 5.304962e-04	ci right 5.935578e-04	k: 1235	n:2200000
KS ci ratio: 4.899782e-02	ci left: 2.829820e-03	ci right 2.972403e-03	k: 6381	n:2200000
OR6C4   2200000 perm   2160 sec   (1019 perm/sec)   p_kst 2.900455e-03   p_cons 5.613636e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.112444e-01	ci left: 5.302952e-04	ci right 5.931975e-04	k: 1240	n:2210000
KS ci ratio: 4.889835e-02	ci left: 2.828636e-03	ci right 2.970862e-03	k: 6407	n:2210000
OR6C4   2210000 perm   2178 sec   (1015 perm/sec)   p_kst 2.899095e-03   p_cons 5.610860e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.110210e-01	ci left: 5.300961e-04	ci right 5.928403e-04	k: 1245	n:2220000
KS ci ratio: 4.876908e-02	ci left: 2.831023e-03	ci right 2.972981e-03	k: 6441	n:2220000
OR6C4   2220000 perm   2195 sec   (1011 perm/sec)   p_kst 2.901351e-03   p_cons 5.608108e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.107989e-01	ci left: 5.298989e-04	ci right 5.924861e-04	k: 1250	n:2230000
KS ci ratio: 4.867100e-02	ci left: 2.829845e-03	ci right 2.971451e-03	k: 6467	n:2230000
OR6C4   2230000 perm   2213 sec   (1008 perm/sec)   p_kst 2.900000e-03   p_cons 5.605381e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.105341e-01	ci left: 5.301377e-04	ci right 5.925938e-04	k: 1256	n:2240000
KS ci ratio: 4.857725e-02	ci left: 2.828237e-03	ci right 2.969482e-03	k: 6492	n:2240000
OR6C4   2240000 perm   2231 sec   (1004 perm/sec)   p_kst 2.898214e-03   p_cons 5.607143e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.103587e-01	ci left: 5.295102e-04	ci right 5.917869e-04	k: 1260	n:2250000
KS ci ratio: 4.844679e-02	ci left: 2.831034e-03	ci right 2.972028e-03	k: 6527	n:2250000
OR6C4   2250000 perm   2250 sec   (1000 perm/sec)   p_kst 2.900889e-03   p_cons 5.600000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.100537e-01	ci left: 5.301792e-04	ci right 5.923510e-04	k: 1267	n:2260000
KS ci ratio: 4.833214e-02	ci left: 2.832058e-03	ci right 2.972761e-03	k: 6558	n:2260000
OR6C4   2260000 perm   2268 sec   (996 perm/sec)   p_kst 2.901770e-03   p_cons 5.606195e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.097942e-01	ci left: 5.304142e-04	ci right 5.924574e-04	k: 1273	n:2270000
KS ci ratio: 4.823299e-02	ci left: 2.831332e-03	ci right 2.971703e-03	k: 6585	n:2270000
OR6C4   2270000 perm   2286 sec   (993 perm/sec)   p_kst 2.900881e-03   p_cons 5.607930e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.095365e-01	ci left: 5.306472e-04	ci right 5.925626e-04	k: 1279	n:2280000
KS ci ratio: 4.811621e-02	ci left: 2.832780e-03	ci right 2.972873e-03	k: 6617	n:2280000
OR6C4   2280000 perm   2304 sec   (990 perm/sec)   p_kst 2.902193e-03   p_cons 5.609649e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.094085e-01	ci left: 5.296041e-04	ci right 5.913209e-04	k: 1282	n:2290000
KS ci ratio: 4.797856e-02	ci left: 2.836805e-03	ci right 2.976684e-03	k: 6655	n:2290000
OR6C4   2290000 perm   2322 sec   (986 perm/sec)   p_kst 2.906114e-03   p_cons 5.598253e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.091535e-01	ci left: 5.298389e-04	ci right 5.914299e-04	k: 1288	n:2300000
KS ci ratio: 4.787079e-02	ci left: 2.837358e-03	ci right 2.976942e-03	k: 6685	n:2300000
OR6C4   2300000 perm   2340 sec   (983 perm/sec)   p_kst 2.906522e-03   p_cons 5.600000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.088163e-01	ci left: 5.309140e-04	ci right 5.924272e-04	k: 1296	n:2310000
KS ci ratio: 4.776018e-02	ci left: 2.838335e-03	ci right 2.977635e-03	k: 6716	n:2310000
OR6C4   2310000 perm   2359 sec   (979 perm/sec)   p_kst 2.907359e-03   p_cons 5.610390e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.084822e-01	ci left: 5.319802e-04	ci right 5.934155e-04	k: 1304	n:2320000
KS ci ratio: 4.767868e-02	ci left: 2.835896e-03	ci right 2.974832e-03	k: 6739	n:2320000
OR6C4   2320000 perm   2377 sec   (976 perm/sec)   p_kst 2.904741e-03   p_cons 5.620690e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.083578e-01	ci left: 5.309496e-04	ci right 5.921912e-04	k: 1307	n:2330000
KS ci ratio: 4.757997e-02	ci left: 2.835599e-03	ci right 2.974225e-03	k: 6767	n:2330000
OR6C4   2330000 perm   2395 sec   (973 perm/sec)   p_kst 2.904292e-03   p_cons 5.609442e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.081101e-01	ci left: 5.311753e-04	ci right 5.922939e-04	k: 1313	n:2340000
KS ci ratio: 4.745036e-02	ci left: 2.839105e-03	ci right 2.977514e-03	k: 6804	n:2340000
OR6C4   2340000 perm   2414 sec   (969 perm/sec)   p_kst 2.907692e-03   p_cons 5.611111e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.079460e-01	ci left: 5.305711e-04	ci right 5.915216e-04	k: 1317	n:2350000
KS ci ratio: 4.733916e-02	ci left: 2.840479e-03	ci right 2.978622e-03	k: 6836	n:2350000
OR6C4   2350000 perm   2432 sec   (966 perm/sec)   p_kst 2.908936e-03   p_cons 5.604255e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.077011e-01	ci left: 5.307968e-04	ci right 5.916261e-04	k: 1323	n:2360000
KS ci ratio: 4.726670e-02	ci left: 2.837236e-03	ci right 2.975005e-03	k: 6857	n:2360000
OR6C4   2360000 perm   2451 sec   (963 perm/sec)   p_kst 2.905508e-03   p_cons 5.605932e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.074579e-01	ci left: 5.310206e-04	ci right 5.917295e-04	k: 1329	n:2370000
KS ci ratio: 4.714649e-02	ci left: 2.839859e-03	ci right 2.977394e-03	k: 6892	n:2370000
OR6C4   2370000 perm   2470 sec   (960 perm/sec)   p_kst 2.908017e-03   p_cons 5.607595e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.072967e-01	ci left: 5.304250e-04	ci right 5.909690e-04	k: 1333	n:2380000
KS ci ratio: 4.704422e-02	ci left: 2.840383e-03	ci right 2.977637e-03	k: 6922	n:2380000
OR6C4   2380000 perm   2488 sec   (956 perm/sec)   p_kst 2.908403e-03   p_cons 5.600840e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.068967e-01	ci left: 5.322777e-04	ci right 5.927925e-04	k: 1343	n:2390000
KS ci ratio: 4.695955e-02	ci left: 2.838836e-03	ci right 2.975762e-03	k: 6947	n:2390000
OR6C4   2390000 perm   2508 sec   (953 perm/sec)   p_kst 2.906695e-03   p_cons 5.619247e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.066194e-01	ci left: 5.328987e-04	ci right 5.933170e-04	k: 1350	n:2400000
KS ci ratio: 4.687196e-02	ci left: 2.837714e-03	ci right 2.974323e-03	k: 6973	n:2400000
OR6C4   2400000 perm   2527 sec   (950 perm/sec)   p_kst 2.905417e-03   p_cons 5.625000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.064619e-01	ci left: 5.323030e-04	ci right 5.925591e-04	k: 1354	n:2410000
KS ci ratio: 4.673801e-02	ci left: 2.842342e-03	ci right 2.978773e-03	k: 7013	n:2410000
OR6C4   2410000 perm   2546 sec   (946 perm/sec)   p_kst 2.909959e-03   p_cons 5.618257e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.062660e-01	ci left: 5.321145e-04	ci right 5.922316e-04	k: 1359	n:2420000
KS ci ratio: 4.666162e-02	ci left: 2.839990e-03	ci right 2.976080e-03	k: 7036	n:2420000
OR6C4   2420000 perm   2566 sec   (943 perm/sec)   p_kst 2.907438e-03   p_cons 5.615702e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.058774e-01	ci left: 5.339308e-04	ci right 5.940187e-04	k: 1369	n:2430000
KS ci ratio: 4.655586e-02	ci left: 2.841318e-03	ci right 2.977154e-03	k: 7068	n:2430000
OR6C4   2430000 perm   2585 sec   (940 perm/sec)   p_kst 2.908642e-03   p_cons 5.633745e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.056847e-01	ci left: 5.337376e-04	ci right 5.936876e-04	k: 1374	n:2440000
KS ci ratio: 4.646394e-02	ci left: 2.841016e-03	ci right 2.976562e-03	k: 7096	n:2440000
OR6C4   2440000 perm   2605 sec   (937 perm/sec)   p_kst 2.908197e-03   p_cons 5.631148e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.056464e-01	ci left: 5.319564e-04	ci right 5.916834e-04	k: 1375	n:2450000
KS ci ratio: 4.636604e-02	ci left: 2.841522e-03	ci right 2.976800e-03	k: 7126	n:2450000
OR6C4   2450000 perm   2624 sec   (934 perm/sec)   p_kst 2.908571e-03   p_cons 5.612245e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.054168e-01	ci left: 5.321686e-04	ci right 5.917815e-04	k: 1381	n:2460000
KS ci ratio: 4.629796e-02	ci left: 2.838409e-03	ci right 2.973334e-03	k: 7147	n:2460000
OR6C4   2460000 perm   2644 sec   (931 perm/sec)   p_kst 2.905285e-03   p_cons 5.613821e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.051887e-01	ci left: 5.323793e-04	ci right 5.918787e-04	k: 1387	n:2470000
KS ci ratio: 4.621401e-02	ci left: 2.837322e-03	ci right 2.971945e-03	k: 7173	n:2470000
OR6C4   2470000 perm   2664 sec   (927 perm/sec)   p_kst 2.904049e-03   p_cons 5.615385e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.048117e-01	ci left: 5.341590e-04	ci right 5.936302e-04	k: 1397	n:2480000
KS ci ratio: 4.612089e-02	ci left: 2.837440e-03	ci right 2.971790e-03	k: 7202	n:2480000
OR6C4   2480000 perm   2684 sec   (924 perm/sec)   p_kst 2.904032e-03   p_cons 5.633065e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.046248e-01	ci left: 5.339692e-04	ci right 5.933068e-04	k: 1402	n:2490000
KS ci ratio: 4.602194e-02	ci left: 2.838351e-03	ci right 2.972448e-03	k: 7233	n:2490000
OR6C4   2490000 perm   2703 sec   (921 perm/sec)   p_kst 2.904819e-03   p_cons 5.630522e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.042539e-01	ci left: 5.357289e-04	ci right 5.950379e-04	k: 1412	n:2500000
KS ci ratio: 4.596172e-02	ci left: 2.834510e-03	ci right 2.968246e-03	k: 7252	n:2500000
OR6C4   2500000 perm   2724 sec   (918 perm/sec)   p_kst 2.900800e-03   p_cons 5.648000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.040332e-01	ci left: 5.359227e-04	ci right 5.951200e-04	k: 1418	n:2510000
KS ci ratio: 4.588275e-02	ci left: 2.833063e-03	ci right 2.966494e-03	k: 7277	n:2510000
OR6C4   2510000 perm   2744 sec   (915 perm/sec)   p_kst 2.899203e-03   p_cons 5.649402e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.038504e-01	ci left: 5.357285e-04	ci right 5.947941e-04	k: 1423	n:2520000
KS ci ratio: 4.578846e-02	ci left: 2.833589e-03	ci right 2.966764e-03	k: 7307	n:2520000
OR6C4   2520000 perm   2764 sec   (912 perm/sec)   p_kst 2.899603e-03   p_cons 5.646825e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.034515e-01	ci left: 5.378462e-04	ci right 5.969036e-04	k: 1434	n:2530000
KS ci ratio: 4.570726e-02	ci left: 2.832548e-03	ci right 2.965432e-03	k: 7333	n:2530000
OR6C4   2530000 perm   2784 sec   (909 perm/sec)   p_kst 2.898419e-03   p_cons 5.667984e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.032359e-01	ci left: 5.380298e-04	ci right 5.969768e-04	k: 1440	n:2540000
KS ci ratio: 4.560473e-02	ci left: 2.834240e-03	ci right 2.966897e-03	k: 7366	n:2540000
OR6C4   2540000 perm   2804 sec   (906 perm/sec)   p_kst 2.900000e-03   p_cons 5.669291e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.030930e-01	ci left: 5.374480e-04	ci right 5.962448e-04	k: 1444	n:2550000
KS ci ratio: 4.550290e-02	ci left: 2.835919e-03	ci right 2.968351e-03	k: 7399	n:2550000
OR6C4   2550000 perm   2825 sec   (903 perm/sec)   p_kst 2.901569e-03   p_cons 5.662745e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.029151e-01	ci left: 5.372514e-04	ci right 5.959191e-04	k: 1449	n:2560000
KS ci ratio: 4.542013e-02	ci left: 2.835269e-03	ci right 2.967422e-03	k: 7426	n:2560000
OR6C4   2560000 perm   2845 sec   (900 perm/sec)   p_kst 2.900781e-03   p_cons 5.660156e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.028088e-01	ci left: 5.362982e-04	ci right 5.947977e-04	k: 1452	n:2570000
KS ci ratio: 4.532257e-02	ci left: 2.836547e-03	ci right 2.968469e-03	k: 7458	n:2570000
OR6C4   2570000 perm   2866 sec   (897 perm/sec)   p_kst 2.901946e-03   p_cons 5.649805e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.027029e-01	ci left: 5.353525e-04	ci right 5.936850e-04	k: 1455	n:2580000
KS ci ratio: 4.524381e-02	ci left: 2.835516e-03	ci right 2.967154e-03	k: 7484	n:2580000
OR6C4   2580000 perm   2887 sec   (894 perm/sec)   p_kst 2.900775e-03   p_cons 5.639535e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.024569e-01	ci left: 5.359188e-04	ci right 5.941648e-04	k: 1462	n:2590000
KS ci ratio: 4.515943e-02	ci left: 2.835256e-03	ci right 2.966631e-03	k: 7512	n:2590000
OR6C4   2590000 perm   2907 sec   (891 perm/sec)   p_kst 2.900386e-03   p_cons 5.644788e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.022474e-01	ci left: 5.361062e-04	ci right 5.942463e-04	k: 1468	n:2600000
KS ci ratio: 4.506354e-02	ci left: 2.836520e-03	ci right 2.967668e-03	k: 7544	n:2600000
OR6C4   2600000 perm   2928 sec   (888 perm/sec)   p_kst 2.901538e-03   p_cons 5.646154e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.020392e-01	ci left: 5.362923e-04	ci right 5.943270e-04	k: 1474	n:2610000
KS ci ratio: 4.500401e-02	ci left: 2.833229e-03	ci right 2.964046e-03	k: 7564	n:2610000
OR6C4   2610000 perm   2949 sec   (885 perm/sec)   p_kst 2.898084e-03   p_cons 5.647510e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.018323e-01	ci left: 5.364771e-04	ci right 5.944070e-04	k: 1480	n:2620000
KS ci ratio: 4.493877e-02	ci left: 2.830718e-03	ci right 2.961225e-03	k: 7586	n:2620000
OR6C4   2620000 perm   2970 sec   (882 perm/sec)   p_kst 2.895420e-03   p_cons 5.648855e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.015243e-01	ci left: 5.377723e-04	ci right 5.956560e-04	k: 1489	n:2630000
KS ci ratio: 4.483837e-02	ci left: 2.832737e-03	ci right 2.963038e-03	k: 7620	n:2630000
OR6C4   2630000 perm   2991 sec   (879 perm/sec)   p_kst 2.897338e-03   p_cons 5.661597e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.010505e-01	ci left: 5.409040e-04	ci right 5.988370e-04	k: 1503	n:2640000
KS ci ratio: 4.472107e-02	ci left: 2.836989e-03	ci right 2.967135e-03	k: 7660	n:2640000
OR6C4   2640000 perm   3013 sec   (876 perm/sec)   p_kst 2.901515e-03   p_cons 5.693182e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.007827e-01	ci left: 5.418056e-04	ci right 5.996722e-04	k: 1511	n:2650000
KS ci ratio: 4.462503e-02	ci left: 2.838597e-03	ci right 2.968531e-03	k: 7693	n:2650000
OR6C4   2650000 perm   3034 sec   (873 perm/sec)   p_kst 2.903019e-03   p_cons 5.701887e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.006497e-01	ci left: 5.412346e-04	ci right 5.989594e-04	k: 1515	n:2660000
KS ci ratio: 4.457881e-02	ci left: 2.833874e-03	ci right 2.963453e-03	k: 7709	n:2660000
OR6C4   2660000 perm   3055 sec   (871 perm/sec)   p_kst 2.898120e-03   p_cons 5.695489e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.006498e-01	ci left: 5.392074e-04	ci right 5.967162e-04	k: 1515	n:2670000
KS ci ratio: 4.450386e-02	ci left: 2.832889e-03	ci right 2.962200e-03	k: 7735	n:2670000
OR6C4   2670000 perm   3076 sec   (868 perm/sec)   p_kst 2.897004e-03   p_cons 5.674157e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.004512e-01	ci left: 5.393780e-04	ci right 5.967847e-04	k: 1521	n:2680000
KS ci ratio: 4.442929e-02	ci left: 2.831912e-03	ci right 2.960957e-03	k: 7761	n:2680000
OR6C4   2680000 perm   3098 sec   (865 perm/sec)   p_kst 2.895896e-03   p_cons 5.675373e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.002867e-01	ci left: 5.391849e-04	ci right 5.964716e-04	k: 1526	n:2690000
KS ci ratio: 4.436080e-02	ci left: 2.830208e-03	ci right 2.958970e-03	k: 7785	n:2690000
OR6C4   2690000 perm   3120 sec   (862 perm/sec)   p_kst 2.894052e-03   p_cons 5.672862e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 9.999236e-02	ci left: 5.404378e-04	ci right 5.976792e-04	k: 1535	n:2700000
KS ci ratio: 4.428978e-02	ci left: 2.828882e-03	ci right 2.957373e-03	k: 7810	n:2700000
OR6C4   2700000 perm   3141 sec   (860 perm/sec)   p_kst 2.892593e-03   p_cons 5.685185e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 9.979763e-02	ci left: 5.406023e-04	ci right 5.977430e-04	k: 1541	n:2710000
KS ci ratio: 4.422194e-02	ci left: 2.827201e-03	ci right 2.955414e-03	k: 7834	n:2710000
OR6C4   2710000 perm   3162 sec   (857 perm/sec)   p_kst 2.890775e-03   p_cons 5.686347e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 9.963623e-02	ci left: 5.404072e-04	ci right 5.974295e-04	k: 1546	n:2720000
KS ci ratio: 4.415440e-02	ci left: 2.825533e-03	ci right 2.953470e-03	k: 7858	n:2720000
OR6C4   2720000 perm   3183 sec   (855 perm/sec)   p_kst 2.888971e-03   p_cons 5.683824e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 9.944357e-02	ci left: 5.405708e-04	ci right 5.974936e-04	k: 1552	n:2730000
KS ci ratio: 4.408157e-02	ci left: 2.824602e-03	ci right 2.952280e-03	k: 7884	n:2730000
OR6C4   2730000 perm   3204 sec   (852 perm/sec)   p_kst 2.887912e-03   p_cons 5.684982e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 9.928388e-02	ci left: 5.403773e-04	ci right 5.971831e-04	k: 1557	n:2740000
KS ci ratio: 4.397009e-02	ci left: 2.828731e-03	ci right 2.956265e-03	k: 7924	n:2740000
OR6C4   2740000 perm   3226 sec   (849 perm/sec)   p_kst 2.891971e-03   p_cons 5.682482e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 9.912496e-02	ci left: 5.401854e-04	ci right 5.968748e-04	k: 1562	n:2750000
KS ci ratio: 4.392033e-02	ci left: 2.824918e-03	ci right 2.952132e-03	k: 7942	n:2750000
OR6C4   2750000 perm   3248 sec   (847 perm/sec)   p_kst 2.888000e-03   p_cons 5.680000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 9.893525e-02	ci left: 5.403483e-04	ci right 5.969400e-04	k: 1568	n:2760000
KS ci ratio: 4.385693e-02	ci left: 2.822925e-03	ci right 2.949861e-03	k: 7965	n:2760000
OR6C4   2760000 perm   3270 sec   (844 perm/sec)   p_kst 2.885870e-03   p_cons 5.681159e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 9.880940e-02	ci left: 5.398059e-04	ci right 5.962647e-04	k: 1572	n:2770000
KS ci ratio: 4.376359e-02	ci left: 2.824874e-03	ci right 2.951620e-03	k: 7999	n:2770000
OR6C4   2770000 perm   3292 sec   (841 perm/sec)   p_kst 2.887726e-03   p_cons 5.675090e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 9.859026e-02	ci left: 5.403200e-04	ci right 5.967000e-04	k: 1579	n:2780000
KS ci ratio: 4.368448e-02	ci left: 2.825030e-03	ci right 2.951549e-03	k: 8028	n:2780000
OR6C4   2780000 perm   3314 sec   (839 perm/sec)   p_kst 2.887770e-03   p_cons 5.679856e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 9.846572e-02	ci left: 5.397817e-04	ci right 5.960303e-04	k: 1583	n:2790000
KS ci ratio: 4.361938e-02	ci left: 2.823413e-03	ci right 2.949666e-03	k: 8052	n:2790000
OR6C4   2790000 perm   3337 sec   (836 perm/sec)   p_kst 2.886022e-03   p_cons 5.673835e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 9.818712e-02	ci left: 5.409892e-04	ci right 5.971949e-04	k: 1592	n:2800000
KS ci ratio: 4.354916e-02	ci left: 2.822514e-03	ci right 2.948518e-03	k: 8078	n:2800000
OR6C4   2800000 perm   3360 sec   (833 perm/sec)   p_kst 2.885000e-03   p_cons 5.685714e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 9.803340e-02	ci left: 5.407997e-04	ci right 5.968927e-04	k: 1597	n:2810000
KS ci ratio: 4.344434e-02	ci left: 2.826197e-03	ci right 2.952055e-03	k: 8117	n:2810000
OR6C4   2810000 perm   3382 sec   (831 perm/sec)   p_kst 2.888612e-03   p_cons 5.683274e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 9.775844e-02	ci left: 5.419953e-04	ci right 5.980456e-04	k: 1606	n:2820000
KS ci ratio: 4.337496e-02	ci left: 2.825295e-03	ci right 2.950907e-03	k: 8143	n:2820000
OR6C4   2820000 perm   3405 sec   (828 perm/sec)   p_kst 2.887589e-03   p_cons 5.695035e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 9.760673e-02	ci left: 5.418037e-04	ci right 5.977423e-04	k: 1611	n:2830000
KS ci ratio: 4.330591e-02	ci left: 2.824399e-03	ci right 2.949766e-03	k: 8169	n:2830000
OR6C4   2830000 perm   3427 sec   (826 perm/sec)   p_kst 2.886572e-03   p_cons 5.692580e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 9.751607e-02	ci left: 5.409265e-04	ci right 5.967197e-04	k: 1614	n:2840000
KS ci ratio: 4.325572e-02	ci left: 2.821072e-03	ci right 2.946142e-03	k: 8188	n:2840000
OR6C4   2840000 perm   3450 sec   (823 perm/sec)   p_kst 2.883099e-03   p_cons 5.683099e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 9.733543e-02	ci left: 5.410825e-04	ci right 5.967825e-04	k: 1620	n:2850000
KS ci ratio: 4.320834e-02	ci left: 2.817421e-03	ci right 2.942189e-03	k: 8206	n:2850000
OR6C4   2850000 perm   3473 sec   (821 perm/sec)   p_kst 2.879298e-03   p_cons 5.684211e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 9.724553e-02	ci left: 5.402140e-04	ci right 5.957703e-04	k: 1623	n:2860000
KS ci ratio: 4.312432e-02	ci left: 2.818638e-03	ci right 2.943211e-03	k: 8238	n:2860000
OR6C4   2860000 perm   3496 sec   (818 perm/sec)   p_kst 2.880420e-03   p_cons 5.674825e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 9.712602e-02	ci left: 5.396916e-04	ci right 5.951221e-04	k: 1627	n:2870000
KS ci ratio: 4.303558e-02	ci left: 2.820536e-03	ci right 2.944930e-03	k: 8272	n:2870000
OR6C4   2870000 perm   3518 sec   (816 perm/sec)   p_kst 2.882230e-03   p_cons 5.668990e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 9.706647e-02	ci left: 5.384952e-04	ci right 5.937670e-04	k: 1629	n:2880000
KS ci ratio: 4.294997e-02	ci left: 2.822078e-03	ci right 2.946286e-03	k: 8305	n:2880000
OR6C4   2880000 perm   3541 sec   (813 perm/sec)   p_kst 2.883681e-03   p_cons 5.656250e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 9.697732e-02	ci left: 5.376448e-04	ci right 5.927757e-04	k: 1632	n:2890000
KS ci ratio: 4.285972e-02	ci left: 2.824294e-03	ci right 2.948332e-03	k: 8340	n:2890000
OR6C4   2890000 perm   3564 sec   (811 perm/sec)   p_kst 2.885813e-03   p_cons 5.647059e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 9.688841e-02	ci left: 5.368002e-04	ci right 5.917912e-04	k: 1635	n:2900000
KS ci ratio: 4.279822e-02	ci left: 2.822742e-03	ci right 2.946530e-03	k: 8364	n:2900000
OR6C4   2900000 perm   3588 sec   (808 perm/sec)   p_kst 2.884138e-03   p_cons 5.637931e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 9.682930e-02	ci left: 5.356262e-04	ci right 5.904615e-04	k: 1637	n:2910000
KS ci ratio: 4.272678e-02	ci left: 2.822561e-03	ci right 2.946129e-03	k: 8392	n:2910000
OR6C4   2910000 perm   3611 sec   (806 perm/sec)   p_kst 2.883849e-03   p_cons 5.625430e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 9.662304e-02	ci left: 5.361311e-04	ci right 5.908946e-04	k: 1644	n:2920000
KS ci ratio: 4.265062e-02	ci left: 2.823059e-03	ci right 2.946424e-03	k: 8422	n:2920000
OR6C4   2920000 perm   3635 sec   (803 perm/sec)   p_kst 2.884247e-03   p_cons 5.630137e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 9.647654e-02	ci left: 5.359666e-04	ci right 5.906256e-04	k: 1649	n:2930000
KS ci ratio: 4.259508e-02	ci left: 2.820852e-03	ci right 2.943956e-03	k: 8444	n:2930000
OR6C4   2930000 perm   3658 sec   (801 perm/sec)   p_kst 2.881911e-03   p_cons 5.627986e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 9.624346e-02	ci left: 5.367991e-04	ci right 5.914033e-04	k: 1657	n:2940000
KS ci ratio: 4.249950e-02	ci left: 2.824045e-03	ci right 2.947005e-03	k: 8482	n:2940000
OR6C4   2940000 perm   3681 sec   (799 perm/sec)   p_kst 2.885034e-03   p_cons 5.636054e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 9.609868e-02	ci left: 5.366336e-04	ci right 5.911342e-04	k: 1662	n:2950000
KS ci ratio: 4.241455e-02	ci left: 2.825875e-03	ci right 2.948663e-03	k: 8516	n:2950000
OR6C4   2950000 perm   3705 sec   (796 perm/sec)   p_kst 2.886780e-03   p_cons 5.633898e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 9.589704e-02	ci left: 5.371288e-04	ci right 5.915587e-04	k: 1669	n:2960000
KS ci ratio: 4.233259e-02	ci left: 2.827359e-03	ci right 2.949968e-03	k: 8549	n:2960000
OR6C4   2960000 perm   3728 sec   (794 perm/sec)   p_kst 2.888176e-03   p_cons 5.638514e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 9.569667e-02	ci left: 5.376207e-04	ci right 5.919803e-04	k: 1676	n:2970000
KS ci ratio: 4.226097e-02	ci left: 2.827500e-03	ci right 2.949903e-03	k: 8578	n:2970000
OR6C4   2970000 perm   3752 sec   (792 perm/sec)   p_kst 2.888215e-03   p_cons 5.643098e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 9.552593e-02	ci left: 5.377819e-04	ci right 5.920553e-04	k: 1682	n:2980000
KS ci ratio: 4.218481e-02	ci left: 2.828305e-03	ci right 2.950516e-03	k: 8609	n:2980000
OR6C4   2980000 perm   3776 sec   (789 perm/sec)   p_kst 2.888926e-03   p_cons 5.644295e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 9.535610e-02	ci left: 5.379421e-04	ci right 5.921298e-04	k: 1688	n:2990000
KS ci ratio: 4.212128e-02	ci left: 2.827450e-03	ci right 2.949436e-03	k: 8635	n:2990000
OR6C4   2990000 perm   3800 sec   (787 perm/sec)   p_kst 2.887960e-03   p_cons 5.645485e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 9.527157e-02	ci left: 5.371251e-04	ci right 5.911798e-04	k: 1691	n:3000000
KS ci ratio: 4.203857e-02	ci left: 2.829239e-03	ci right 2.951057e-03	k: 8669	n:3000000
OR6C4   3000000 perm   3825 sec   (784 perm/sec)   p_kst 2.889667e-03   p_cons 5.636667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 9.521537e-02	ci left: 5.359892e-04	ci right 5.898961e-04	k: 1693	n:3010000
KS ci ratio: 4.199508e-02	ci left: 2.825757e-03	ci right 2.947296e-03	k: 8687	n:3010000
OR6C4   3010000 perm   3849 sec   (782 perm/sec)   p_kst 2.886047e-03   p_cons 5.624585e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 9.504719e-02	ci left: 5.361539e-04	ci right 5.899768e-04	k: 1699	n:3020000
KS ci ratio: 4.191070e-02	ci left: 2.827868e-03	ci right 2.949247e-03	k: 8722	n:3020000
OR6C4   3020000 perm   3874 sec   (780 perm/sec)   p_kst 2.888079e-03   p_cons 5.625828e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 9.493559e-02	ci left: 5.356732e-04	ci right 5.893812e-04	k: 1703	n:3030000
KS ci ratio: 4.184361e-02	ci left: 2.827679e-03	ci right 2.948852e-03	k: 8750	n:3030000
OR6C4   3030000 perm   3898 sec   (777 perm/sec)   p_kst 2.887789e-03   p_cons 5.620462e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 9.479662e-02	ci left: 5.355168e-04	ci right 5.891262e-04	k: 1708	n:3040000
KS ci ratio: 4.179832e-02	ci left: 2.824562e-03	ci right 2.945467e-03	k: 8769	n:3040000
OR6C4   3040000 perm   3922 sec   (775 perm/sec)   p_kst 2.884539e-03   p_cons 5.618421e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 9.468590e-02	ci left: 5.350414e-04	ci right 5.885371e-04	k: 1712	n:3050000
KS ci ratio: 4.174842e-02	ci left: 2.822115e-03	ci right 2.942767e-03	k: 8790	n:3050000
OR6C4   3050000 perm   3947 sec   (773 perm/sec)   p_kst 2.881967e-03   p_cons 5.613115e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 9.452051e-02	ci left: 5.352073e-04	ci right 5.886210e-04	k: 1718	n:3060000
KS ci ratio: 4.167026e-02	ci left: 2.823564e-03	ci right 2.944047e-03	k: 8823	n:3060000
OR6C4   3060000 perm   3971 sec   (771 perm/sec)   p_kst 2.883333e-03   p_cons 5.614379e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 9.430129e-02	ci left: 5.360083e-04	ci right 5.893710e-04	k: 1726	n:3070000
KS ci ratio: 4.158546e-02	ci left: 2.825971e-03	ci right 2.946305e-03	k: 8859	n:3070000
OR6C4   3070000 perm   3996 sec   (768 perm/sec)   p_kst 2.885668e-03   p_cons 5.622150e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 9.421953e-02	ci left: 5.352191e-04	ci right 5.884545e-04	k: 1729	n:3080000
KS ci ratio: 4.151991e-02	ci left: 2.825792e-03	ci right 2.945925e-03	k: 8887	n:3080000
OR6C4   3080000 perm   4020 sec   (766 perm/sec)   p_kst 2.885390e-03   p_cons 5.613636e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 9.402947e-02	ci left: 5.356990e-04	ci right 5.888687e-04	k: 1736	n:3090000
KS ci ratio: 4.146167e-02	ci left: 2.824654e-03	ci right 2.944566e-03	k: 8912	n:3090000
OR6C4   3090000 perm   4045 sec   (764 perm/sec)   p_kst 2.884142e-03   p_cons 5.618123e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 9.397544e-02	ci left: 5.346010e-04	ci right 5.876295e-04	k: 1738	n:3100000
KS ci ratio: 4.139670e-02	ci left: 2.824481e-03	ci right 2.944193e-03	k: 8940	n:3100000
OR6C4   3100000 perm   4069 sec   (762 perm/sec)   p_kst 2.883871e-03   p_cons 5.606452e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 9.384064e-02	ci left: 5.344519e-04	ci right 5.873855e-04	k: 1743	n:3110000
KS ci ratio: 4.133435e-02	ci left: 2.823991e-03	ci right 2.943497e-03	k: 8967	n:3110000
OR6C4   3110000 perm   4094 sec   (760 perm/sec)   p_kst 2.883280e-03   p_cons 5.604502e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 9.370642e-02	ci left: 5.343039e-04	ci right 5.871430e-04	k: 1748	n:3120000
KS ci ratio: 4.127228e-02	ci left: 2.823504e-03	ci right 2.942806e-03	k: 8994	n:3120000
OR6C4   3120000 perm   4119 sec   (757 perm/sec)   p_kst 2.882692e-03   p_cons 5.602564e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 9.357277e-02	ci left: 5.341569e-04	ci right 5.869020e-04	k: 1753	n:3130000
KS ci ratio: 4.118989e-02	ci left: 2.825866e-03	ci right 2.945024e-03	k: 9030	n:3130000
OR6C4   3130000 perm   4144 sec   (755 perm/sec)   p_kst 2.884984e-03   p_cons 5.600639e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 9.336007e-02	ci left: 5.349440e-04	ci right 5.876402e-04	k: 1761	n:3140000
KS ci ratio: 4.113074e-02	ci left: 2.825062e-03	ci right 2.944011e-03	k: 9056	n:3140000
OR6C4   3140000 perm   4169 sec   (753 perm/sec)   p_kst 2.884076e-03   p_cons 5.608280e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 9.320151e-02	ci left: 5.351061e-04	ci right 5.877238e-04	k: 1767	n:3150000
KS ci ratio: 4.105146e-02	ci left: 2.827090e-03	ci right 2.945890e-03	k: 9091	n:3150000
OR6C4   3150000 perm   4194 sec   (751 perm/sec)   p_kst 2.886032e-03   p_cons 5.609524e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 9.314889e-02	ci left: 5.340309e-04	ci right 5.865116e-04	k: 1769	n:3160000
KS ci ratio: 4.098389e-02	ci left: 2.827540e-03	ci right 2.946159e-03	k: 9121	n:3160000
OR6C4   3160000 perm   4219 sec   (749 perm/sec)   p_kst 2.886392e-03   p_cons 5.598101e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 9.296523e-02	ci left: 5.345031e-04	ci right 5.869210e-04	k: 1776	n:3170000
KS ci ratio: 4.091218e-02	ci left: 2.828612e-03	ci right 2.947063e-03	k: 9153	n:3170000
OR6C4   3170000 perm   4244 sec   (747 perm/sec)   p_kst 2.887382e-03   p_cons 5.602524e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 9.288689e-02	ci left: 5.337437e-04	ci right 5.860406e-04	k: 1779	n:3180000
KS ci ratio: 4.085868e-02	ci left: 2.827187e-03	ci right 2.945419e-03	k: 9177	n:3180000
OR6C4   3180000 perm   4270 sec   (745 perm/sec)   p_kst 2.885849e-03   p_cons 5.594340e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 9.265290e-02	ci left: 5.348264e-04	ci right 5.870903e-04	k: 1788	n:3190000
KS ci ratio: 4.079873e-02	ci left: 2.826702e-03	ci right 2.944737e-03	k: 9204	n:3190000
OR6C4   3190000 perm   4295 sec   (743 perm/sec)   p_kst 2.885266e-03   p_cons 5.605016e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 9.239497e-02	ci left: 5.362078e-04	ci right 5.884529e-04	k: 1798	n:3200000
KS ci ratio: 4.073682e-02	ci left: 2.826529e-03	ci right 2.944373e-03	k: 9232	n:3200000
OR6C4   3200000 perm   4321 sec   (741 perm/sec)   p_kst 2.885000e-03   p_cons 5.618750e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 9.221571e-02	ci left: 5.366677e-04	ci right 5.888507e-04	k: 1805	n:3210000
KS ci ratio: 4.068621e-02	ci left: 2.824816e-03	ci right 2.942439e-03	k: 9255	n:3210000
OR6C4   3210000 perm   4346 sec   (739 perm/sec)   p_kst 2.883178e-03   p_cons 5.623053e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 9.206290e-02	ci left: 5.368215e-04	ci right 5.889282e-04	k: 1811	n:3220000
KS ci ratio: 4.060070e-02	ci left: 2.828032e-03	ci right 2.945536e-03	k: 9294	n:3220000
OR6C4   3220000 perm   4371 sec   (737 perm/sec)   p_kst 2.886335e-03   p_cons 5.624224e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 9.188557e-02	ci left: 5.372768e-04	ci right 5.893219e-04	k: 1818	n:3230000
KS ci ratio: 4.055278e-02	ci left: 2.826018e-03	ci right 2.943297e-03	k: 9316	n:3230000
OR6C4   3230000 perm   4397 sec   (735 perm/sec)   p_kst 2.884211e-03   p_cons 5.628483e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 9.180993e-02	ci left: 5.365232e-04	ci right 5.884502e-04	k: 1821	n:3240000
KS ci ratio: 4.049851e-02	ci left: 2.824934e-03	ci right 2.942007e-03	k: 9341	n:3240000
OR6C4   3240000 perm   4422 sec   (733 perm/sec)   p_kst 2.883025e-03   p_cons 5.620370e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 9.170934e-02	ci left: 5.360749e-04	ci right 5.878986e-04	k: 1825	n:3250000
KS ci ratio: 4.044445e-02	ci left: 2.823856e-03	ci right 2.940725e-03	k: 9366	n:3250000
OR6C4   3250000 perm   4448 sec   (731 perm/sec)   p_kst 2.881846e-03   p_cons 5.615385e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 9.150907e-02	ci left: 5.368283e-04	ci right 5.886054e-04	k: 1833	n:3260000
KS ci ratio: 4.035615e-02	ci left: 2.827644e-03	ci right 2.944408e-03	k: 9407	n:3260000
OR6C4   3260000 perm   4474 sec   (729 perm/sec)   p_kst 2.885583e-03   p_cons 5.622699e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 9.133491e-02	ci left: 5.372783e-04	ci right 5.889950e-04	k: 1840	n:3270000
KS ci ratio: 4.027912e-02	ci left: 2.829895e-03	ci right 2.946523e-03	k: 9443	n:3270000
OR6C4   3270000 perm   4500 sec   (727 perm/sec)   p_kst 2.887768e-03   p_cons 5.626911e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 9.123587e-02	ci left: 5.368319e-04	ci right 5.884466e-04	k: 1844	n:3280000
KS ci ratio: 4.018977e-02	ci left: 2.833943e-03	ci right 2.950474e-03	k: 9485	n:3280000
OR6C4   3280000 perm   4526 sec   (725 perm/sec)   p_kst 2.891768e-03   p_cons 5.621951e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 9.103868e-02	ci left: 5.375764e-04	ci right 5.891451e-04	k: 1852	n:3290000
KS ci ratio: 4.010946e-02	ci left: 2.836764e-03	ci right 2.953172e-03	k: 9523	n:3290000
OR6C4   3290000 perm   4552 sec   (723 perm/sec)   p_kst 2.894529e-03   p_cons 5.629179e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 9.094060e-02	ci left: 5.371319e-04	ci right 5.885995e-04	k: 1856	n:3300000
KS ci ratio: 4.005274e-02	ci left: 2.836267e-03	ci right 2.952486e-03	k: 9550	n:3300000
OR6C4   3300000 perm   4578 sec   (721 perm/sec)   p_kst 2.893939e-03   p_cons 5.624242e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 9.076966e-02	ci left: 5.375760e-04	ci right 5.889841e-04	k: 1863	n:3310000
KS ci ratio: 3.998579e-02	ci left: 2.837270e-03	ci right 2.953331e-03	k: 9582	n:3310000
OR6C4   3310000 perm   4604 sec   (719 perm/sec)   p_kst 2.894864e-03   p_cons 5.628399e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 9.064818e-02	ci left: 5.374286e-04	ci right 5.887502e-04	k: 1868	n:3320000
KS ci ratio: 3.994210e-02	ci left: 2.834986e-03	ci right 2.950824e-03	k: 9603	n:3320000
OR6C4   3320000 perm   4630 sec   (717 perm/sec)   p_kst 2.892470e-03   p_cons 5.626506e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 9.043066e-02	ci left: 5.384562e-04	ci right 5.897460e-04	k: 1877	n:3330000
KS ci ratio: 3.986533e-02	ci left: 2.837472e-03	ci right 2.953184e-03	k: 9640	n:3330000
OR6C4   3330000 perm   4657 sec   (715 perm/sec)   p_kst 2.894895e-03   p_cons 5.636637e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 9.026258e-02	ci left: 5.388925e-04	ci right 5.901235e-04	k: 1884	n:3340000
KS ci ratio: 3.981377e-02	ci left: 2.836387e-03	ci right 2.951902e-03	k: 9665	n:3340000
OR6C4   3340000 perm   4684 sec   (713 perm/sec)   p_kst 2.893713e-03   p_cons 5.640719e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 9.007162e-02	ci left: 5.396181e-04	ci right 5.908038e-04	k: 1892	n:3350000
KS ci ratio: 3.974801e-02	ci left: 2.837378e-03	ci right 2.952738e-03	k: 9697	n:3350000
OR6C4   3350000 perm   4710 sec   (711 perm/sec)   p_kst 2.894627e-03   p_cons 5.647761e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 8.992921e-02	ci left: 5.397577e-04	ci right 5.908713e-04	k: 1898	n:3360000
KS ci ratio: 3.967644e-02	ci left: 2.839247e-03	ci right 2.954470e-03	k: 9732	n:3360000
OR6C4   3360000 perm   4736 sec   (709 perm/sec)   p_kst 2.896429e-03   p_cons 5.648810e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 8.976390e-02	ci left: 5.401865e-04	ci right 5.912418e-04	k: 1905	n:3370000
KS ci ratio: 3.962561e-02	ci left: 2.838166e-03	ci right 2.953195e-03	k: 9757	n:3370000
OR6C4   3370000 perm   4763 sec   (708 perm/sec)   p_kst 2.895252e-03   p_cons 5.652819e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 8.969337e-02	ci left: 5.394559e-04	ci right 5.904001e-04	k: 1908	n:3380000
KS ci ratio: 3.956483e-02	ci left: 2.838557e-03	ci right 2.953421e-03	k: 9787	n:3380000
OR6C4   3380000 perm   4790 sec   (706 perm/sec)   p_kst 2.895562e-03   p_cons 5.644970e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 8.952936e-02	ci left: 5.398833e-04	ci right 5.907696e-04	k: 1915	n:3390000
KS ci ratio: 3.950836e-02	ci left: 2.838362e-03	ci right 2.953050e-03	k: 9815	n:3390000
OR6C4   3390000 perm   4816 sec   (704 perm/sec)   p_kst 2.895280e-03   p_cons 5.648968e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 8.929658e-02	ci left: 5.411708e-04	ci right 5.920390e-04	k: 1925	n:3400000
KS ci ratio: 3.944009e-02	ci left: 2.839915e-03	ci right 2.954463e-03	k: 9849	n:3400000
OR6C4   3400000 perm   4843 sec   (702 perm/sec)   p_kst 2.896765e-03   p_cons 5.661765e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 8.918090e-02	ci left: 5.410173e-04	ci right 5.918018e-04	k: 1930	n:3410000
KS ci ratio: 3.939416e-02	ci left: 2.838265e-03	ci right 2.952611e-03	k: 9872	n:3410000
OR6C4   3410000 perm   4869 sec   (700 perm/sec)   p_kst 2.895015e-03   p_cons 5.659824e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 8.904267e-02	ci left: 5.411507e-04	ci right 5.918649e-04	k: 1936	n:3420000
KS ci ratio: 3.934839e-02	ci left: 2.836625e-03	ci right 2.950769e-03	k: 9895	n:3420000
OR6C4   3420000 perm   4896 sec   (699 perm/sec)   p_kst 2.893275e-03   p_cons 5.660819e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 8.899678e-02	ci left: 5.401431e-04	ci right 5.907354e-04	k: 1938	n:3430000
KS ci ratio: 3.929086e-02	ci left: 2.836727e-03	ci right 2.950704e-03	k: 9924	n:3430000
OR6C4   3430000 perm   4923 sec   (697 perm/sec)   p_kst 2.893294e-03   p_cons 5.650146e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 8.892805e-02	ci left: 5.394256e-04	ci right 5.899096e-04	k: 1941	n:3440000
KS ci ratio: 3.921975e-02	ci left: 2.838843e-03	ci right 2.952694e-03	k: 9960	n:3440000
OR6C4   3440000 perm   4950 sec   (695 perm/sec)   p_kst 2.895349e-03   p_cons 5.642442e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 8.883663e-02	ci left: 5.389957e-04	ci right 5.893849e-04	k: 1945	n:3450000
KS ci ratio: 3.915689e-02	ci left: 2.839799e-03	ci right 2.953502e-03	k: 9992	n:3450000
OR6C4   3450000 perm   4978 sec   (693 perm/sec)   p_kst 2.896232e-03   p_cons 5.637681e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 8.876827e-02	ci left: 5.382857e-04	ci right 5.885678e-04	k: 1948	n:3460000
KS ci ratio: 3.910802e-02	ci left: 2.838746e-03	ci right 2.952262e-03	k: 10017	n:3460000
OR6C4   3460000 perm   5005 sec   (691 perm/sec)   p_kst 2.895087e-03   p_cons 5.630058e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 8.851875e-02	ci left: 5.398342e-04	ci right 5.901119e-04	k: 1959	n:3470000
KS ci ratio: 3.906129e-02	ci left: 2.837414e-03	ci right 2.950738e-03	k: 10041	n:3470000
OR6C4   3470000 perm   5032 sec   (690 perm/sec)   p_kst 2.893660e-03   p_cons 5.645533e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 8.836109e-02	ci left: 5.402500e-04	ci right 5.904722e-04	k: 1966	n:3480000
KS ci ratio: 3.899530e-02	ci left: 2.838935e-03	ci right 2.952124e-03	k: 10075	n:3480000
OR6C4   3480000 perm   5060 sec   (688 perm/sec)   p_kst 2.895115e-03   p_cons 5.649425e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 8.815959e-02	ci left: 5.412239e-04	ci right 5.914159e-04	k: 1975	n:3490000
KS ci ratio: 3.894897e-02	ci left: 2.837611e-03	ci right 2.950609e-03	k: 10099	n:3490000
OR6C4   3490000 perm   5087 sec   (686 perm/sec)   p_kst 2.893696e-03   p_cons 5.659026e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 8.800383e-02	ci left: 5.416335e-04	ci right 5.917702e-04	k: 1982	n:3500000
KS ci ratio: 3.889317e-02	ci left: 2.837708e-03	ci right 2.950545e-03	k: 10128	n:3500000
OR6C4   3500000 perm   5115 sec   (684 perm/sec)   p_kst 2.893714e-03   p_cons 5.662857e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 8.784890e-02	ci left: 5.420408e-04	ci right 5.921224e-04	k: 1989	n:3510000
KS ci ratio: 3.884145e-02	ci left: 2.837241e-03	ci right 2.949906e-03	k: 10155	n:3510000
OR6C4   3510000 perm   5142 sec   (683 perm/sec)   p_kst 2.893162e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 8.776076e-02	ci left: 5.416123e-04	ci right 5.916016e-04	k: 1993	n:3520000
KS ci ratio: 3.879375e-02	ci left: 2.836214e-03	ci right 2.948697e-03	k: 10180	n:3520000
OR6C4   3520000 perm   5170 sec   (681 perm/sec)   p_kst 2.892045e-03   p_cons 5.661932e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 8.767289e-02	ci left: 5.411863e-04	ci right 5.910836e-04	k: 1997	n:3530000
KS ci ratio: 3.874243e-02	ci left: 2.835754e-03	ci right 2.948066e-03	k: 10207	n:3530000
OR6C4   3530000 perm   5198 sec   (679 perm/sec)   p_kst 2.891501e-03   p_cons 5.657224e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 8.743247e-02	ci left: 5.426969e-04	ci right 5.925892e-04	k: 2008	n:3540000
KS ci ratio: 3.867236e-02	ci left: 2.838095e-03	ci right 2.950292e-03	k: 10244	n:3540000
OR6C4   3540000 perm   5225 sec   (677 perm/sec)   p_kst 2.893785e-03   p_cons 5.672316e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 8.738903e-02	ci left: 5.417192e-04	ci right 5.914957e-04	k: 2010	n:3550000
KS ci ratio: 3.861209e-02	ci left: 2.839027e-03	ci right 2.951082e-03	k: 10276	n:3550000
OR6C4   3550000 perm   5253 sec   (676 perm/sec)   p_kst 2.894648e-03   p_cons 5.661972e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 8.725895e-02	ci left: 5.418461e-04	ci right 5.915564e-04	k: 2016	n:3560000
KS ci ratio: 3.856335e-02	ci left: 2.838285e-03	ci right 2.950166e-03	k: 10302	n:3560000
OR6C4   3560000 perm   5281 sec   (674 perm/sec)   p_kst 2.893820e-03   p_cons 5.662921e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 8.708639e-02	ci left: 5.425204e-04	ci right 5.921891e-04	k: 2024	n:3570000
KS ci ratio: 3.853164e-02	ci left: 2.835051e-03	ci right 2.946711e-03	k: 10319	n:3570000
OR6C4   3570000 perm   5309 sec   (672 perm/sec)   p_kst 2.890476e-03   p_cons 5.669468e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 8.697908e-02	ci left: 5.423712e-04	ci right 5.919620e-04	k: 2029	n:3580000
KS ci ratio: 3.848321e-02	ci left: 2.834324e-03	ci right 2.945812e-03	k: 10345	n:3580000
OR6C4   3580000 perm   5337 sec   (671 perm/sec)   p_kst 2.889665e-03   p_cons 5.667598e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 8.689354e-02	ci left: 5.419504e-04	ci right 5.914515e-04	k: 2033	n:3590000
KS ci ratio: 3.843496e-02	ci left: 2.833602e-03	ci right 2.944918e-03	k: 10371	n:3590000
OR6C4   3590000 perm   5366 sec   (669 perm/sec)   p_kst 2.888858e-03   p_cons 5.662953e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 8.674438e-02	ci left: 5.423472e-04	ci right 5.917952e-04	k: 2040	n:3600000
KS ci ratio: 3.837949e-02	ci left: 2.833984e-03	ci right 2.945151e-03	k: 10401	n:3600000
OR6C4   3600000 perm   5394 sec   (667 perm/sec)   p_kst 2.889167e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 8.663833e-02	ci left: 5.421999e-04	ci right 5.915709e-04	k: 2045	n:3610000
KS ci ratio: 3.832979e-02	ci left: 2.833541e-03	ci right 2.944544e-03	k: 10428	n:3610000
OR6C4   3610000 perm   5422 sec   (666 perm/sec)   p_kst 2.888643e-03   p_cons 5.664820e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 8.655379e-02	ci left: 5.417831e-04	ci right 5.910657e-04	k: 2049	n:3620000
KS ci ratio: 3.827661e-02	ci left: 2.833648e-03	ci right 2.944498e-03	k: 10457	n:3620000
OR6C4   3620000 perm   5451 sec   (664 perm/sec)   p_kst 2.888674e-03   p_cons 5.660221e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 8.640637e-02	ci left: 5.421773e-04	ci right 5.914074e-04	k: 2056	n:3630000
KS ci ratio: 3.822548e-02	ci left: 2.833481e-03	ci right 2.944173e-03	k: 10485	n:3630000
OR6C4   3630000 perm   5480 sec   (662 perm/sec)   p_kst 2.888430e-03   p_cons 5.663912e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 8.623881e-02	ci left: 5.428382e-04	ci right 5.920279e-04	k: 2064	n:3640000
KS ci ratio: 3.818183e-02	ci left: 2.832228e-03	ci right 2.942741e-03	k: 10509	n:3640000
OR6C4   3640000 perm   5508 sec   (661 perm/sec)   p_kst 2.887088e-03   p_cons 5.670330e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 8.611379e-02	ci left: 5.429593e-04	ci right 5.920852e-04	k: 2070	n:3650000
KS ci ratio: 3.812745e-02	ci left: 2.832609e-03	ci right 2.942977e-03	k: 10539	n:3650000
OR6C4   3650000 perm   5537 sec   (659 perm/sec)   p_kst 2.887397e-03   p_cons 5.671233e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 8.594792e-02	ci left: 5.436146e-04	ci right 5.927002e-04	k: 2078	n:3660000
KS ci ratio: 3.806788e-02	ci left: 2.833800e-03	ci right 2.944038e-03	k: 10572	n:3660000
OR6C4   3660000 perm   5565 sec   (658 perm/sec)   p_kst 2.888525e-03   p_cons 5.677596e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 8.582416e-02	ci left: 5.437332e-04	ci right 5.927552e-04	k: 2084	n:3670000
KS ci ratio: 3.800679e-02	ci left: 2.835255e-03	ci right 2.945368e-03	k: 10606	n:3670000
OR6C4   3670000 perm   5594 sec   (656 perm/sec)   p_kst 2.889918e-03   p_cons 5.678474e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 8.570094e-02	ci left: 5.438511e-04	ci right 5.928099e-04	k: 2090	n:3680000
KS ci ratio: 3.795494e-02	ci left: 2.835356e-03	ci right 2.945320e-03	k: 10635	n:3680000
OR6C4   3680000 perm   5623 sec   (654 perm/sec)   p_kst 2.889946e-03   p_cons 5.679348e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 8.557824e-02	ci left: 5.439684e-04	ci right 5.928642e-04	k: 2096	n:3690000
KS ci ratio: 3.790865e-02	ci left: 2.834651e-03	ci right 2.944451e-03	k: 10661	n:3690000
OR6C4   3690000 perm   5652 sec   (653 perm/sec)   p_kst 2.889160e-03   p_cons 5.680217e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 8.549676e-02	ci left: 5.435562e-04	ci right 5.923661e-04	k: 2100	n:3700000
KS ci ratio: 3.786786e-02	ci left: 2.833147e-03	ci right 2.942768e-03	k: 10684	n:3700000
OR6C4   3700000 perm   5682 sec   (651 perm/sec)   p_kst 2.887568e-03   p_cons 5.675676e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 8.541551e-02	ci left: 5.431462e-04	ci right 5.918706e-04	k: 2104	n:3710000
KS ci ratio: 3.783251e-02	ci left: 2.830850e-03	ci right 2.940278e-03	k: 10704	n:3710000
OR6C4   3710000 perm   5710 sec   (650 perm/sec)   p_kst 2.885175e-03   p_cons 5.671159e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 8.533449e-02	ci left: 5.427384e-04	ci right 5.913778e-04	k: 2108	n:3720000
KS ci ratio: 3.778137e-02	ci left: 2.830963e-03	ci right 2.940244e-03	k: 10733	n:3720000
OR6C4   3720000 perm   5739 sec   (648 perm/sec)   p_kst 2.885215e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 8.527389e-02	ci left: 5.420705e-04	ci right 5.906138e-04	k: 2111	n:3730000
KS ci ratio: 3.771112e-02	ci left: 2.833996e-03	ci right 2.943186e-03	k: 10773	n:3730000
OR6C4   3730000 perm   5768 sec   (647 perm/sec)   p_kst 2.888204e-03   p_cons 5.659517e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 8.515301e-02	ci left: 5.421912e-04	ci right 5.906730e-04	k: 2117	n:3740000
KS ci ratio: 3.765522e-02	ci left: 2.834894e-03	ci right 2.943953e-03	k: 10805	n:3740000
OR6C4   3740000 perm   5797 sec   (645 perm/sec)   p_kst 2.889037e-03   p_cons 5.660428e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 8.505269e-02	ci left: 5.420503e-04	ci right 5.904596e-04	k: 2122	n:3750000
KS ci ratio: 3.759262e-02	ci left: 2.836844e-03	ci right 2.945793e-03	k: 10841	n:3750000
OR6C4   3750000 perm   5827 sec   (644 perm/sec)   p_kst 2.890933e-03   p_cons 5.658667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 8.493275e-02	ci left: 5.421705e-04	ci right 5.905189e-04	k: 2128	n:3760000
KS ci ratio: 3.755630e-02	ci left: 2.834832e-03	ci right 2.943596e-03	k: 10862	n:3760000
OR6C4   3760000 perm   5857 sec   (642 perm/sec)   p_kst 2.888830e-03   p_cons 5.659574e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 8.485310e-02	ci left: 5.417709e-04	ci right 5.900360e-04	k: 2132	n:3770000
KS ci ratio: 3.750282e-02	ci left: 2.835458e-03	ci right 2.944088e-03	k: 10893	n:3770000
OR6C4   3770000 perm   5885 sec   (641 perm/sec)   p_kst 2.889390e-03   p_cons 5.655172e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 8.479352e-02	ci left: 5.411144e-04	ci right 5.892856e-04	k: 2135	n:3780000
KS ci ratio: 3.744956e-02	ci left: 2.836081e-03	ci right 2.944577e-03	k: 10924	n:3780000
OR6C4   3780000 perm   5914 sec   (639 perm/sec)   p_kst 2.889947e-03   p_cons 5.648148e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 8.475389e-02	ci left: 5.402032e-04	ci right 5.882697e-04	k: 2137	n:3790000
KS ci ratio: 3.739311e-02	ci left: 2.837223e-03	ci right 2.945596e-03	k: 10957	n:3790000
OR6C4   3790000 perm   5944 sec   (638 perm/sec)   p_kst 2.891029e-03   p_cons 5.638522e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 8.459574e-02	ci left: 5.408423e-04	ci right 5.888714e-04	k: 2145	n:3800000
KS ci ratio: 3.733862e-02	ci left: 2.838099e-03	ci right 2.946344e-03	k: 10989	n:3800000
OR6C4   3800000 perm   5973 sec   (636 perm/sec)   p_kst 2.891842e-03   p_cons 5.644737e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 8.441887e-02	ci left: 5.417351e-04	ci right 5.897379e-04	k: 2154	n:3810000
KS ci ratio: 3.727927e-02	ci left: 2.839751e-03	ci right 2.947883e-03	k: 11024	n:3810000
OR6C4   3810000 perm   6003 sec   (635 perm/sec)   p_kst 2.893438e-03   p_cons 5.653543e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 8.434065e-02	ci left: 5.413419e-04	ci right 5.892633e-04	k: 2158	n:3820000
KS ci ratio: 3.722190e-02	ci left: 2.841135e-03	ci right 2.949150e-03	k: 11058	n:3820000
OR6C4   3820000 perm   6033 sec   (633 perm/sec)   p_kst 2.894764e-03   p_cons 5.649215e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 8.424316e-02	ci left: 5.412065e-04	ci right 5.890578e-04	k: 2163	n:3830000
KS ci ratio: 3.718160e-02	ci left: 2.839925e-03	ci right 2.947774e-03	k: 11082	n:3830000
OR6C4   3830000 perm   6063 sec   (632 perm/sec)   p_kst 2.893473e-03   p_cons 5.647520e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 8.412661e-02	ci left: 5.413267e-04	ci right 5.891191e-04	k: 2169	n:3840000
KS ci ratio: 3.712970e-02	ci left: 2.840527e-03	ci right 2.948246e-03	k: 11113	n:3840000
OR6C4   3840000 perm   6093 sec   (630 perm/sec)   p_kst 2.894010e-03   p_cons 5.648438e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 8.402987e-02	ci left: 5.411921e-04	ci right 5.889150e-04	k: 2174	n:3850000
KS ci ratio: 3.709304e-02	ci left: 2.838810e-03	ci right 2.946355e-03	k: 11135	n:3850000
OR6C4   3850000 perm   6123 sec   (629 perm/sec)   p_kst 2.892208e-03   p_cons 5.646753e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 8.389496e-02	ci left: 5.415654e-04	ci right 5.892408e-04	k: 2181	n:3860000
KS ci ratio: 3.705982e-02	ci left: 2.836589e-03	ci right 2.943952e-03	k: 11155	n:3860000
OR6C4   3860000 perm   6153 sec   (627 perm/sec)   p_kst 2.889896e-03   p_cons 5.650259e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 8.372243e-02	ci left: 5.424429e-04	ci right 5.900925e-04	k: 2190	n:3870000
KS ci ratio: 3.703167e-02	ci left: 2.833611e-03	ci right 2.940778e-03	k: 11172	n:3870000
OR6C4   3870000 perm   6183 sec   (626 perm/sec)   p_kst 2.886822e-03   p_cons 5.658915e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 8.364613e-02	ci left: 5.420542e-04	ci right 5.896242e-04	k: 2194	n:3880000
KS ci ratio: 3.698205e-02	ci left: 2.833969e-03	ci right 2.941002e-03	k: 11202	n:3880000
OR6C4   3880000 perm   6214 sec   (624 perm/sec)   p_kst 2.887113e-03   p_cons 5.654639e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 8.345620e-02	ci left: 5.431777e-04	ci right 5.907328e-04	k: 2204	n:3890000
KS ci ratio: 3.694252e-02	ci left: 2.832796e-03	ci right 2.939668e-03	k: 11226	n:3890000
OR6C4   3890000 perm   6245 sec   (623 perm/sec)   p_kst 2.885861e-03   p_cons 5.665810e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 8.332403e-02	ci left: 5.435424e-04	ci right 5.910504e-04	k: 2211	n:3900000
KS ci ratio: 3.690806e-02	ci left: 2.830867e-03	ci right 2.937565e-03	k: 11247	n:3900000
OR6C4   3900000 perm   6276 sec   (621 perm/sec)   p_kst 2.883846e-03   p_cons 5.669231e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 8.321125e-02	ci left: 5.436548e-04	ci right 5.911052e-04	k: 2217	n:3910000
KS ci ratio: 3.685238e-02	ci left: 2.832243e-03	ci right 2.938828e-03	k: 11281	n:3910000
OR6C4   3910000 perm   6306 sec   (620 perm/sec)   p_kst 2.885166e-03   p_cons 5.670077e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 8.306156e-02	ci left: 5.442663e-04	ci right 5.916805e-04	k: 2225	n:3920000
KS ci ratio: 3.680021e-02	ci left: 2.833106e-03	ci right 2.939569e-03	k: 11313	n:3920000
OR6C4   3920000 perm   6337 sec   (619 perm/sec)   p_kst 2.885969e-03   p_cons 5.676020e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 8.300567e-02	ci left: 5.436289e-04	ci right 5.909542e-04	k: 2228	n:3930000
KS ci ratio: 3.675151e-02	ci left: 2.833460e-03	ci right 2.939793e-03	k: 11343	n:3930000
OR6C4   3930000 perm   6367 sec   (617 perm/sec)   p_kst 2.886260e-03   p_cons 5.669211e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 8.282006e-02	ci left: 5.447346e-04	ci right 5.920450e-04	k: 2238	n:3940000
KS ci ratio: 3.669654e-02	ci left: 2.834819e-03	ci right 2.941041e-03	k: 11377	n:3940000
OR6C4   3940000 perm   6397 sec   (616 perm/sec)   p_kst 2.887563e-03   p_cons 5.680203e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 8.263568e-02	ci left: 5.458348e-04	ci right 5.931301e-04	k: 2248	n:3950000
KS ci ratio: 3.664181e-02	ci left: 2.836171e-03	ci right 2.942281e-03	k: 11411	n:3950000
OR6C4   3950000 perm   6428 sec   (614 perm/sec)   p_kst 2.888861e-03   p_cons 5.691139e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 8.252567e-02	ci left: 5.459403e-04	ci right 5.931787e-04	k: 2254	n:3960000
KS ci ratio: 3.659373e-02	ci left: 2.836515e-03	ci right 2.942496e-03	k: 11441	n:3960000
OR6C4   3960000 perm   6459 sec   (613 perm/sec)   p_kst 2.889141e-03   p_cons 5.691919e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 8.236144e-02	ci left: 5.467855e-04	ci right 5.939983e-04	k: 2263	n:3970000
KS ci ratio: 3.655064e-02	ci left: 2.836109e-03	ci right 2.941948e-03	k: 11468	n:3970000
OR6C4   3970000 perm   6490 sec   (612 perm/sec)   p_kst 2.888665e-03   p_cons 5.700252e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 8.230695e-02	ci left: 5.461499e-04	ci right 5.932751e-04	k: 2266	n:3980000
KS ci ratio: 3.650930e-02	ci left: 2.835456e-03	ci right 2.941148e-03	k: 11494	n:3980000
OR6C4   3980000 perm   6521 sec   (610 perm/sec)   p_kst 2.887940e-03   p_cons 5.693467e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 8.221634e-02	ci left: 5.460084e-04	ci right 5.930671e-04	k: 2271	n:3990000
KS ci ratio: 3.646492e-02	ci left: 2.835303e-03	ci right 2.940859e-03	k: 11522	n:3990000
OR6C4   3990000 perm   6552 sec   (609 perm/sec)   p_kst 2.887719e-03   p_cons 5.691729e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 8.203596e-02	ci left: 5.470921e-04	ci right 5.941358e-04	k: 2281	n:4000000
KS ci ratio: 3.642228e-02	ci left: 2.834904e-03	ci right 2.940318e-03	k: 11549	n:4000000
OR6C4   4000000 perm   6584 sec   (608 perm/sec)   p_kst 2.887250e-03   p_cons 5.702500e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 8.196418e-02	ci left: 5.467048e-04	ci right 5.936721e-04	k: 2285	n:4010000
KS ci ratio: 3.638137e-02	ci left: 2.834259e-03	ci right 2.939528e-03	k: 11575	n:4010000
OR6C4   4010000 perm   6615 sec   (606 perm/sec)   p_kst 2.886534e-03   p_cons 5.698254e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 8.185682e-02	ci left: 5.468068e-04	ci right 5.937184e-04	k: 2291	n:4020000
KS ci ratio: 3.633431e-02	ci left: 2.834603e-03	ci right 2.939747e-03	k: 11605	n:4020000
OR6C4   4020000 perm   6646 sec   (605 perm/sec)   p_kst 2.886816e-03   p_cons 5.699005e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 8.182117e-02	ci left: 5.459361e-04	ci right 5.927516e-04	k: 2293	n:4030000
KS ci ratio: 3.628274e-02	ci left: 2.835684e-03	ci right 2.940715e-03	k: 11638	n:4030000
OR6C4   4030000 perm   6677 sec   (604 perm/sec)   p_kst 2.887841e-03   p_cons 5.689826e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 8.176774e-02	ci left: 5.453121e-04	ci right 5.920422e-04	k: 2296	n:4040000
KS ci ratio: 3.624697e-02	ci left: 2.834306e-03	ci right 2.939181e-03	k: 11661	n:4040000
OR6C4   4040000 perm   6708 sec   (602 perm/sec)   p_kst 2.886386e-03   p_cons 5.683168e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 8.159029e-02	ci left: 5.463844e-04	ci right 5.930999e-04	k: 2306	n:4050000
KS ci ratio: 3.620354e-02	ci left: 2.834159e-03	ci right 2.938900e-03	k: 11689	n:4050000
OR6C4   4050000 perm   6740 sec   (601 perm/sec)   p_kst 2.886173e-03   p_cons 5.693827e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 8.153732e-02	ci left: 5.457625e-04	ci right 5.923930e-04	k: 2309	n:4060000
KS ci ratio: 3.616956e-02	ci left: 2.832548e-03	ci right 2.937129e-03	k: 11711	n:4060000
OR6C4   4060000 perm   6771 sec   (600 perm/sec)   p_kst 2.884483e-03   p_cons 5.687192e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 8.139647e-02	ci left: 5.463471e-04	ci right 5.929432e-04	k: 2317	n:4070000
KS ci ratio: 3.613566e-02	ci left: 2.830945e-03	ci right 2.935366e-03	k: 11733	n:4070000
OR6C4   4070000 perm   6803 sec   (598 perm/sec)   p_kst 2.882801e-03   p_cons 5.692875e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 8.134388e-02	ci left: 5.457283e-04	ci right 5.922401e-04	k: 2320	n:4080000
KS ci ratio: 3.609725e-02	ci left: 2.830078e-03	ci right 2.934355e-03	k: 11758	n:4080000
OR6C4   4080000 perm   6835 sec   (597 perm/sec)   p_kst 2.881863e-03   p_cons 5.686275e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 8.125641e-02	ci left: 5.455917e-04	ci right 5.920395e-04	k: 2325	n:4090000
KS ci ratio: 3.605895e-02	ci left: 2.829216e-03	ci right 2.933348e-03	k: 11783	n:4090000
OR6C4   4090000 perm   6867 sec   (596 perm/sec)   p_kst 2.880929e-03   p_cons 5.684597e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 8.108226e-02	ci left: 5.466505e-04	ci right 5.930840e-04	k: 2335	n:4100000
KS ci ratio: 3.599786e-02	ci left: 2.831984e-03	ci right 2.936037e-03	k: 11823	n:4100000
OR6C4   4100000 perm   6899 sec   (594 perm/sec)   p_kst 2.883659e-03   p_cons 5.695122e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 8.099563e-02	ci left: 5.465123e-04	ci right 5.928821e-04	k: 2340	n:4110000
KS ci ratio: 3.594771e-02	ci left: 2.833050e-03	ci right 2.936995e-03	k: 11856	n:4110000
OR6C4   4110000 perm   6931 sec   (593 perm/sec)   p_kst 2.884672e-03   p_cons 5.693431e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 8.090928e-02	ci left: 5.463749e-04	ci right 5.926812e-04	k: 2345	n:4120000
KS ci ratio: 3.591141e-02	ci left: 2.831947e-03	ci right 2.935744e-03	k: 11880	n:4120000
OR6C4   4120000 perm   6963 sec   (592 perm/sec)   p_kst 2.883495e-03   p_cons 5.691748e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 8.080601e-02	ci left: 5.464753e-04	ci right 5.927283e-04	k: 2351	n:4130000
KS ci ratio: 3.587823e-02	ci left: 2.830369e-03	ci right 2.934010e-03	k: 11902	n:4130000
OR6C4   4130000 perm   6996 sec   (590 perm/sec)   p_kst 2.881840e-03   p_cons 5.692494e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 8.070313e-02	ci left: 5.465754e-04	ci right 5.927752e-04	k: 2357	n:4140000
KS ci ratio: 3.583611e-02	ci left: 2.830235e-03	ci right 2.933747e-03	k: 11930	n:4140000
OR6C4   4140000 perm   7028 sec   (589 perm/sec)   p_kst 2.881643e-03   p_cons 5.693237e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 8.058360e-02	ci left: 5.469110e-04	ci right 5.930675e-04	k: 2364	n:4150000
KS ci ratio: 3.579114e-02	ci left: 2.830579e-03	ci right 2.933972e-03	k: 11960	n:4150000
OR6C4   4150000 perm   7061 sec   (588 perm/sec)   p_kst 2.881928e-03   p_cons 5.696386e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 8.051555e-02	ci left: 5.465385e-04	ci right 5.926228e-04	k: 2368	n:4160000
KS ci ratio: 3.574334e-02	ci left: 2.831399e-03	ci right 2.934680e-03	k: 11992	n:4160000
OR6C4   4160000 perm   7093 sec   (586 perm/sec)   p_kst 2.882692e-03   p_cons 5.692308e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 8.039685e-02	ci left: 5.468728e-04	ci right 5.929141e-04	k: 2375	n:4170000
KS ci ratio: 3.571063e-02	ci left: 2.829837e-03	ci right 2.932965e-03	k: 12014	n:4170000
OR6C4   4170000 perm   7126 sec   (585 perm/sec)   p_kst 2.881055e-03   p_cons 5.695444e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 8.034617e-02	ci left: 5.462677e-04	ci right 5.922277e-04	k: 2378	n:4180000
KS ci ratio: 3.566019e-02	ci left: 2.831129e-03	ci right 2.934155e-03	k: 12048	n:4180000
OR6C4   4180000 perm   7159 sec   (584 perm/sec)   p_kst 2.882297e-03   p_cons 5.688995e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 8.026188e-02	ci left: 5.461333e-04	ci right 5.920316e-04	k: 2383	n:4190000
KS ci ratio: 3.562179e-02	ci left: 2.830522e-03	ci right 2.933413e-03	k: 12074	n:4190000
OR6C4   4190000 perm   7191 sec   (583 perm/sec)   p_kst 2.881623e-03   p_cons 5.687351e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 8.021145e-02	ci left: 5.455330e-04	ci right 5.913506e-04	k: 2386	n:4200000
KS ci ratio: 3.558351e-02	ci left: 2.829918e-03	ci right 2.932674e-03	k: 12100	n:4200000
OR6C4   4200000 perm   7224 sec   (581 perm/sec)   p_kst 2.880952e-03   p_cons 5.680952e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 8.016112e-02	ci left: 5.449355e-04	ci right 5.906729e-04	k: 2389	n:4210000
KS ci ratio: 3.554242e-02	ci left: 2.829788e-03	ci right 2.932418e-03	k: 12128	n:4210000
OR6C4   4210000 perm   7256 sec   (580 perm/sec)   p_kst 2.880760e-03   p_cons 5.674584e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 8.006068e-02	ci left: 5.450375e-04	ci right 5.907234e-04	k: 2395	n:4220000
KS ci ratio: 3.550294e-02	ci left: 2.829423e-03	ci right 2.931924e-03	k: 12155	n:4220000
OR6C4   4220000 perm   7289 sec   (579 perm/sec)   p_kst 2.880332e-03   p_cons 5.675355e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 7.999395e-02	ci left: 5.446757e-04	ci right 5.902915e-04	k: 2399	n:4230000
KS ci ratio: 3.545045e-02	ci left: 2.831170e-03	ci right 2.933579e-03	k: 12191	n:4230000
OR6C4   4230000 perm   7322 sec   (578 perm/sec)   p_kst 2.882033e-03   p_cons 5.671395e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 7.991076e-02	ci left: 5.445467e-04	ci right 5.901021e-04	k: 2404	n:4240000
KS ci ratio: 3.539529e-02	ci left: 2.833375e-03	ci right 2.935702e-03	k: 12229	n:4240000
OR6C4   4240000 perm   7355 sec   (576 perm/sec)   p_kst 2.884198e-03   p_cons 5.669811e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 7.982783e-02	ci left: 5.444184e-04	ci right 5.899136e-04	k: 2409	n:4250000
KS ci ratio: 3.534618e-02	ci left: 2.834638e-03	ci right 2.936865e-03	k: 12263	n:4250000
OR6C4   4250000 perm   7388 sec   (575 perm/sec)   p_kst 2.885412e-03   p_cons 5.668235e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 7.976168e-02	ci left: 5.440606e-04	ci right 5.894865e-04	k: 2413	n:4260000
KS ci ratio: 3.530158e-02	ci left: 2.835196e-03	ci right 2.937312e-03	k: 12294	n:4260000
OR6C4   4260000 perm   7421 sec   (574 perm/sec)   p_kst 2.885915e-03   p_cons 5.664319e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 7.966274e-02	ci left: 5.441636e-04	ci right 5.895391e-04	k: 2419	n:4270000
KS ci ratio: 3.525572e-02	ci left: 2.835985e-03	ci right 2.937993e-03	k: 12326	n:4270000
OR6C4   4270000 perm   7455 sec   (573 perm/sec)   p_kst 2.886651e-03   p_cons 5.665105e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 7.961343e-02	ci left: 5.435792e-04	ci right 5.888766e-04	k: 2422	n:4280000
KS ci ratio: 3.521432e-02	ci left: 2.836075e-03	ci right 2.937964e-03	k: 12355	n:4280000
OR6C4   4280000 perm   7488 sec   (572 perm/sec)   p_kst 2.886682e-03   p_cons 5.658879e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 7.953142e-02	ci left: 5.434544e-04	ci right 5.886926e-04	k: 2427	n:4290000
KS ci ratio: 3.517164e-02	ci left: 2.836395e-03	ci right 2.938170e-03	k: 12385	n:4290000
OR6C4   4290000 perm   7521 sec   (570 perm/sec)   p_kst 2.886946e-03   p_cons 5.657343e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 7.944966e-02	ci left: 5.433303e-04	ci right 5.885095e-04	k: 2432	n:4300000
KS ci ratio: 3.512912e-02	ci left: 2.836714e-03	ci right 2.938376e-03	k: 12415	n:4300000
OR6C4   4300000 perm   7555 sec   (569 perm/sec)   p_kst 2.887209e-03   p_cons 5.655814e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 7.936816e-02	ci left: 5.432067e-04	ci right 5.883271e-04	k: 2437	n:4310000
KS ci ratio: 3.507827e-02	ci left: 2.838412e-03	ci right 2.939984e-03	k: 12451	n:4310000
OR6C4   4310000 perm   7588 sec   (568 perm/sec)   p_kst 2.888863e-03   p_cons 5.654292e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 7.933566e-02	ci left: 5.424030e-04	ci right 5.874374e-04	k: 2439	n:4320000
KS ci ratio: 3.503609e-02	ci left: 2.838725e-03	ci right 2.940184e-03	k: 12481	n:4320000
OR6C4   4320000 perm   7622 sec   (567 perm/sec)   p_kst 2.889120e-03   p_cons 5.645833e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 7.923829e-02	ci left: 5.425086e-04	ci right 5.874939e-04	k: 2445	n:4330000
KS ci ratio: 3.499967e-02	ci left: 2.838121e-03	ci right 2.939451e-03	k: 12507	n:4330000
OR6C4   4330000 perm   7656 sec   (566 perm/sec)   p_kst 2.888453e-03   p_cons 5.646651e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 7.917359e-02	ci left: 5.421620e-04	ci right 5.870802e-04	k: 2449	n:4340000
KS ci ratio: 3.495916e-02	ci left: 2.838205e-03	ci right 2.939418e-03	k: 12536	n:4340000
OR6C4   4340000 perm   7690 sec   (564 perm/sec)   p_kst 2.888479e-03   p_cons 5.642857e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 7.902854e-02	ci left: 5.429437e-04	ci right 5.878404e-04	k: 2458	n:4350000
KS ci ratio: 3.492995e-02	ci left: 2.836466e-03	ci right 2.937531e-03	k: 12557	n:4350000
OR6C4   4350000 perm   7723 sec   (563 perm/sec)   p_kst 2.886667e-03   p_cons 5.650575e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 7.891628e-02	ci left: 5.432722e-04	ci right 5.881294e-04	k: 2465	n:4360000
KS ci ratio: 3.488969e-02	ci left: 2.836554e-03	ci right 2.937503e-03	k: 12586	n:4360000
OR6C4   4360000 perm   7757 sec   (562 perm/sec)   p_kst 2.886697e-03   p_cons 5.653670e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 7.886835e-02	ci left: 5.427019e-04	ci right 5.874836e-04	k: 2468	n:4370000
KS ci ratio: 3.484541e-02	ci left: 2.837322e-03	ci right 2.938167e-03	k: 12618	n:4370000
OR6C4   4370000 perm   7791 sec   (561 perm/sec)   p_kst 2.887414e-03   p_cons 5.647597e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 7.877269e-02	ci left: 5.428058e-04	ci right 5.875391e-04	k: 2474	n:4380000
KS ci ratio: 3.480682e-02	ci left: 2.837181e-03	ci right 2.937907e-03	k: 12646	n:4380000
OR6C4   4380000 perm   7825 sec   (560 perm/sec)   p_kst 2.887215e-03   p_cons 5.648402e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 7.870913e-02	ci left: 5.424625e-04	ci right 5.871299e-04	k: 2478	n:4390000
KS ci ratio: 3.477248e-02	ci left: 2.836363e-03	ci right 2.936959e-03	k: 12671	n:4390000
OR6C4   4390000 perm   7859 sec   (559 perm/sec)   p_kst 2.886333e-03   p_cons 5.644647e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 7.861405e-02	ci left: 5.425665e-04	ci right 5.871859e-04	k: 2484	n:4400000
KS ci ratio: 3.472591e-02	ci left: 2.837577e-03	ci right 2.938079e-03	k: 12705	n:4400000
OR6C4   4400000 perm   7893 sec   (557 perm/sec)   p_kst 2.887500e-03   p_cons 5.645455e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 7.858246e-02	ci left: 5.417807e-04	ci right 5.863169e-04	k: 2486	n:4410000
KS ci ratio: 3.468771e-02	ci left: 2.837437e-03	ci right 2.937821e-03	k: 12733	n:4410000
OR6C4   4410000 perm   7927 sec   (556 perm/sec)   p_kst 2.887302e-03   p_cons 5.637188e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 7.853513e-02	ci left: 5.412204e-04	ci right 5.856825e-04	k: 2489	n:4420000
KS ci ratio: 3.465781e-02	ci left: 2.835951e-03	ci right 2.936195e-03	k: 12755	n:4420000
OR6C4   4420000 perm   7962 sec   (555 perm/sec)   p_kst 2.885747e-03   p_cons 5.631222e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 7.842496e-02	ci left: 5.415478e-04	ci right 5.859715e-04	k: 2496	n:4430000
KS ci ratio: 3.461713e-02	ci left: 2.836263e-03	ci right 2.936397e-03	k: 12785	n:4430000
OR6C4   4430000 perm   7996 sec   (554 perm/sec)   p_kst 2.886005e-03   p_cons 5.634312e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 7.828398e-02	ci left: 5.423154e-04	ci right 5.867185e-04	k: 2505	n:4440000
KS ci ratio: 3.458606e-02	ci left: 2.835011e-03	ci right 2.935009e-03	k: 12808	n:4440000
OR6C4   4440000 perm   8031 sec   (553 perm/sec)   p_kst 2.884685e-03   p_cons 5.641892e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 7.823719e-02	ci left: 5.417577e-04	ci right 5.860874e-04	k: 2508	n:4450000
KS ci ratio: 3.455507e-02	ci left: 2.833764e-03	ci right 2.933627e-03	k: 12831	n:4450000
OR6C4   4450000 perm   8066 sec   (552 perm/sec)   p_kst 2.883371e-03   p_cons 5.635955e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 7.811273e-02	ci left: 5.423017e-04	ci right 5.866020e-04	k: 2516	n:4460000
KS ci ratio: 3.451609e-02	ci left: 2.833856e-03	ci right 2.933607e-03	k: 12860	n:4460000
OR6C4   4460000 perm   8101 sec   (551 perm/sec)   p_kst 2.883408e-03   p_cons 5.641256e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 7.801979e-02	ci left: 5.424045e-04	ci right 5.866582e-04	k: 2522	n:4470000
KS ci ratio: 3.447858e-02	ci left: 2.833726e-03	ci right 2.933362e-03	k: 12888	n:4470000
OR6C4   4470000 perm   8136 sec   (549 perm/sec)   p_kst 2.883221e-03   p_cons 5.642058e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 7.791177e-02	ci left: 5.427259e-04	ci right 5.869417e-04	k: 2529	n:4480000
KS ci ratio: 3.443852e-02	ci left: 2.834040e-03	ci right 2.933569e-03	k: 12918	n:4480000
OR6C4   4480000 perm   8171 sec   (548 perm/sec)   p_kst 2.883482e-03   p_cons 5.645089e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 7.780420e-02	ci left: 5.430458e-04	ci right 5.872238e-04	k: 2536	n:4490000
KS ci ratio: 3.438795e-02	ci left: 2.836118e-03	ci right 2.935571e-03	k: 12956	n:4490000
OR6C4   4490000 perm   8206 sec   (547 perm/sec)   p_kst 2.885523e-03   p_cons 5.648107e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 7.772765e-02	ci left: 5.429285e-04	ci right 5.870516e-04	k: 2541	n:4500000
KS ci ratio: 3.433362e-02	ci left: 2.838849e-03	ci right 2.938237e-03	k: 12997	n:4500000
OR6C4   4500000 perm   8241 sec   (546 perm/sec)   p_kst 2.888222e-03   p_cons 5.646667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 7.762084e-02	ci left: 5.432466e-04	ci right 5.873322e-04	k: 2548	n:4510000
KS ci ratio: 3.429274e-02	ci left: 2.839369e-03	ci right 2.938655e-03	k: 13028	n:4510000
OR6C4   4510000 perm   8276 sec   (545 perm/sec)   p_kst 2.888692e-03   p_cons 5.649667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 7.742360e-02	ci left: 5.448651e-04	ci right 5.889646e-04	k: 2561	n:4520000
KS ci ratio: 3.425070e-02	ci left: 2.840106e-03	ci right 2.939294e-03	k: 13060	n:4520000
OR6C4   4520000 perm   8311 sec   (544 perm/sec)   p_kst 2.889381e-03   p_cons 5.665929e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 7.734816e-02	ci left: 5.447447e-04	ci right 5.887895e-04	k: 2566	n:4530000
KS ci ratio: 3.421929e-02	ci left: 2.839089e-03	ci right 2.938149e-03	k: 13084	n:4530000
OR6C4   4530000 perm   8347 sec   (543 perm/sec)   p_kst 2.888300e-03   p_cons 5.664459e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 7.724291e-02	ci left: 5.450569e-04	ci right 5.890643e-04	k: 2573	n:4540000
KS ci ratio: 3.417882e-02	ci left: 2.839605e-03	ci right 2.938563e-03	k: 13115	n:4540000
OR6C4   4540000 perm   8382 sec   (542 perm/sec)   p_kst 2.888767e-03   p_cons 5.667401e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 7.715303e-02	ci left: 5.451522e-04	ci right 5.891138e-04	k: 2579	n:4550000
KS ci ratio: 3.414370e-02	ci left: 2.839248e-03	ci right 2.938090e-03	k: 13142	n:4550000
OR6C4   4550000 perm   8417 sec   (541 perm/sec)   p_kst 2.888352e-03   p_cons 5.668132e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 7.709331e-02	ci left: 5.448170e-04	ci right 5.887160e-04	k: 2583	n:4560000
KS ci ratio: 3.410220e-02	ci left: 2.839979e-03	ci right 2.938724e-03	k: 13174	n:4560000
OR6C4   4560000 perm   8453 sec   (539 perm/sec)   p_kst 2.889035e-03   p_cons 5.664474e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 7.698909e-02	ci left: 5.451270e-04	ci right 5.889890e-04	k: 2590	n:4570000
KS ci ratio: 3.406861e-02	ci left: 2.839405e-03	ci right 2.938031e-03	k: 13200	n:4570000
OR6C4   4570000 perm   8488 sec   (538 perm/sec)   p_kst 2.888403e-03   p_cons 5.667396e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 7.692974e-02	ci left: 5.447934e-04	ci right 5.885931e-04	k: 2594	n:4580000
KS ci ratio: 3.404287e-02	ci left: 2.837535e-03	ci right 2.936020e-03	k: 13220	n:4580000
OR6C4   4580000 perm   8523 sec   (537 perm/sec)   p_kst 2.886463e-03   p_cons 5.663755e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 7.685574e-02	ci left: 5.446748e-04	ci right 5.884211e-04	k: 2599	n:4590000
KS ci ratio: 3.400945e-02	ci left: 2.836970e-03	ci right 2.935337e-03	k: 13246	n:4590000
OR6C4   4590000 perm   8559 sec   (536 perm/sec)   p_kst 2.885839e-03   p_cons 5.662309e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 7.676721e-02	ci left: 5.447700e-04	ci right 5.884713e-04	k: 2605	n:4600000
KS ci ratio: 3.396587e-02	ci left: 2.838131e-03	ci right 2.936409e-03	k: 13280	n:4600000
OR6C4   4600000 perm   8594 sec   (535 perm/sec)   p_kst 2.886957e-03   p_cons 5.663043e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 7.669368e-02	ci left: 5.446521e-04	ci right 5.883002e-04	k: 2610	n:4610000
KS ci ratio: 3.391480e-02	ci left: 2.840578e-03	ci right 2.938790e-03	k: 13320	n:4610000
OR6C4   4610000 perm   8630 sec   (534 perm/sec)   p_kst 2.889371e-03   p_cons 5.661605e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 7.656181e-02	ci left: 5.453840e-04	ci right 5.890122e-04	k: 2619	n:4620000
KS ci ratio: 3.388049e-02	ci left: 2.840224e-03	ci right 2.938323e-03	k: 13347	n:4620000
OR6C4   4620000 perm   8666 sec   (533 perm/sec)   p_kst 2.888961e-03   p_cons 5.668831e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 7.648887e-02	ci left: 5.452653e-04	ci right 5.888406e-04	k: 2624	n:4630000
KS ci ratio: 3.384628e-02	ci left: 2.839872e-03	ci right 2.937857e-03	k: 13374	n:4630000
OR6C4   4630000 perm   8702 sec   (532 perm/sec)   p_kst 2.888553e-03   p_cons 5.667387e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 7.644522e-02	ci left: 5.447243e-04	ci right 5.882304e-04	k: 2627	n:4640000
KS ci ratio: 3.380206e-02	ci left: 2.841231e-03	ci right 2.939133e-03	k: 13409	n:4640000
OR6C4   4640000 perm   8738 sec   (531 perm/sec)   p_kst 2.889871e-03   p_cons 5.661638e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 7.634360e-02	ci left: 5.450295e-04	ci right 5.884996e-04	k: 2634	n:4650000
KS ci ratio: 3.377565e-02	ci left: 2.839598e-03	ci right 2.937366e-03	k: 13430	n:4650000
OR6C4   4650000 perm   8774 sec   (530 perm/sec)   p_kst 2.888172e-03   p_cons 5.664516e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 7.621353e-02	ci left: 5.457544e-04	ci right 5.892048e-04	k: 2643	n:4660000
KS ci ratio: 3.373799e-02	ci left: 2.839888e-03	ci right 2.937555e-03	k: 13460	n:4660000
OR6C4   4660000 perm   8810 sec   (529 perm/sec)   p_kst 2.888412e-03   p_cons 5.671674e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 7.612720e-02	ci left: 5.458461e-04	ci right 5.892524e-04	k: 2649	n:4670000
KS ci ratio: 3.369670e-02	ci left: 2.840814e-03	ci right 2.938391e-03	k: 13493	n:4670000
OR6C4   4670000 perm   8847 sec   (528 perm/sec)   p_kst 2.889293e-03   p_cons 5.672377e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 7.604116e-02	ci left: 5.459374e-04	ci right 5.892998e-04	k: 2655	n:4680000
KS ci ratio: 3.365805e-02	ci left: 2.841312e-03	ci right 2.938792e-03	k: 13524	n:4680000
OR6C4   4680000 perm   8883 sec   (527 perm/sec)   p_kst 2.889744e-03   p_cons 5.673077e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 7.596969e-02	ci left: 5.458192e-04	ci right 5.891296e-04	k: 2660	n:4690000
KS ci ratio: 3.362078e-02	ci left: 2.841597e-03	ci right 2.938976e-03	k: 13554	n:4690000
OR6C4   4690000 perm   8920 sec   (526 perm/sec)   p_kst 2.889979e-03   p_cons 5.671642e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 7.584151e-02	ci left: 5.465364e-04	ci right 5.898274e-04	k: 2669	n:4700000
KS ci ratio: 3.357991e-02	ci left: 2.842513e-03	ci right 2.939803e-03	k: 13587	n:4700000
OR6C4   4700000 perm   8956 sec   (525 perm/sec)   p_kst 2.890851e-03   p_cons 5.678723e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 7.581316e-02	ci left: 5.457926e-04	ci right 5.890078e-04	k: 2671	n:4710000
KS ci ratio: 3.354043e-02	ci left: 2.843215e-03	ci right 2.940413e-03	k: 13619	n:4710000
OR6C4   4710000 perm   8992 sec   (524 perm/sec)   p_kst 2.891507e-03   p_cons 5.670913e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 7.572818e-02	ci left: 5.458834e-04	ci right 5.890551e-04	k: 2677	n:4720000
KS ci ratio: 3.350970e-02	ci left: 2.842443e-03	ci right 2.939524e-03	k: 13644	n:4720000
OR6C4   4720000 perm   9029 sec   (523 perm/sec)   p_kst 2.890678e-03   p_cons 5.671610e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 7.561530e-02	ci left: 5.463886e-04	ci right 5.895331e-04	k: 2685	n:4730000
KS ci ratio: 3.346924e-02	ci left: 2.843352e-03	ci right 2.940344e-03	k: 13677	n:4730000
OR6C4   4730000 perm   9068 sec   (522 perm/sec)   p_kst 2.891543e-03   p_cons 5.676533e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 7.557313e-02	ci left: 5.458569e-04	ci right 5.889343e-04	k: 2688	n:4740000
KS ci ratio: 3.343871e-02	ci left: 2.842584e-03	ci right 2.939460e-03	k: 13702	n:4740000
OR6C4   4740000 perm   9104 sec   (521 perm/sec)   p_kst 2.890717e-03   p_cons 5.670886e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 7.548895e-02	ci left: 5.459470e-04	ci right 5.889814e-04	k: 2694	n:4750000
KS ci ratio: 3.338632e-02	ci left: 2.845577e-03	ci right 2.942399e-03	k: 13745	n:4750000
OR6C4   4750000 perm   9141 sec   (520 perm/sec)   p_kst 2.893684e-03   p_cons 5.671579e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 7.536319e-02	ci left: 5.466551e-04	ci right 5.896704e-04	k: 2703	n:4760000
KS ci ratio: 3.335359e-02	ci left: 2.845223e-03	ci right 2.941938e-03	k: 13772	n:4760000
OR6C4   4760000 perm   9178 sec   (519 perm/sec)   p_kst 2.893277e-03   p_cons 5.678571e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 7.534930e-02	ci left: 5.457148e-04	ci right 5.886478e-04	k: 2704	n:4770000
KS ci ratio: 3.332579e-02	ci left: 2.844040e-03	ci right 2.940632e-03	k: 13795	n:4770000
OR6C4   4770000 perm   9214 sec   (518 perm/sec)   p_kst 2.892034e-03   p_cons 5.668763e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 7.529366e-02	ci left: 5.453942e-04	ci right 5.882689e-04	k: 2708	n:4780000
KS ci ratio: 3.328961e-02	ci left: 2.844314e-03	ci right 2.940808e-03	k: 13825	n:4780000
OR6C4   4780000 perm   9252 sec   (517 perm/sec)   p_kst 2.892259e-03   p_cons 5.665272e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 7.522428e-02	ci left: 5.452798e-04	ci right 5.881043e-04	k: 2713	n:4790000
KS ci ratio: 3.324994e-02	ci left: 2.845208e-03	ci right 2.941616e-03	k: 13858	n:4790000
OR6C4   4790000 perm   9289 sec   (516 perm/sec)   p_kst 2.893111e-03   p_cons 5.663883e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 7.512745e-02	ci left: 5.455747e-04	ci right 5.883648e-04	k: 2720	n:4800000
KS ci ratio: 3.322481e-02	ci left: 2.843619e-03	ci right 2.939899e-03	k: 13879	n:4800000
OR6C4   4800000 perm   9327 sec   (515 perm/sec)   p_kst 2.891458e-03   p_cons 5.666667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 7.503099e-02	ci left: 5.458684e-04	ci right 5.886242e-04	k: 2727	n:4810000
KS ci ratio: 3.318776e-02	ci left: 2.844099e-03	ci right 2.940285e-03	k: 13910	n:4810000
OR6C4   4810000 perm   9365 sec   (514 perm/sec)   p_kst 2.891892e-03   p_cons 5.669439e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 7.493490e-02	ci left: 5.461610e-04	ci right 5.888825e-04	k: 2734	n:4820000
KS ci ratio: 3.314964e-02	ci left: 2.844782e-03	ci right 2.940879e-03	k: 13942	n:4820000
OR6C4   4820000 perm   9402 sec   (513 perm/sec)   p_kst 2.892531e-03   p_cons 5.672199e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 7.482552e-02	ci left: 5.466555e-04	ci right 5.893506e-04	k: 2742	n:4830000
KS ci ratio: 3.311403e-02	ci left: 2.845052e-03	ci right 2.941053e-03	k: 13972	n:4830000
OR6C4   4830000 perm   9440 sec   (512 perm/sec)   p_kst 2.892754e-03   p_cons 5.677019e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 7.481192e-02	ci left: 5.457288e-04	ci right 5.883434e-04	k: 2743	n:4840000
KS ci ratio: 3.307380e-02	ci left: 2.846141e-03	ci right 2.942059e-03	k: 14006	n:4840000
OR6C4   4840000 perm   9477 sec   (511 perm/sec)   p_kst 2.893802e-03   p_cons 5.667355e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 7.478470e-02	ci left: 5.450082e-04	ci right 5.875505e-04	k: 2745	n:4850000
KS ci ratio: 3.305143e-02	ci left: 2.844157e-03	ci right 2.939943e-03	k: 14025	n:4850000
OR6C4   4850000 perm   9515 sec   (510 perm/sec)   p_kst 2.891753e-03   p_cons 5.659794e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 7.473031e-02	ci left: 5.446945e-04	ci right 5.871799e-04	k: 2749	n:4860000
KS ci ratio: 3.301496e-02	ci left: 2.844631e-03	ci right 2.940325e-03	k: 14056	n:4860000
OR6C4   4860000 perm   9552 sec   (509 perm/sec)   p_kst 2.892181e-03   p_cons 5.656379e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 7.463537e-02	ci left: 5.449865e-04	ci right 5.874384e-04	k: 2756	n:4870000
KS ci ratio: 3.298213e-02	ci left: 2.844492e-03	ci right 2.940084e-03	k: 14084	n:4870000
OR6C4   4870000 perm   9590 sec   (508 perm/sec)   p_kst 2.891992e-03   p_cons 5.659138e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 7.454079e-02	ci left: 5.452774e-04	ci right 5.876958e-04	k: 2763	n:4880000
KS ci ratio: 3.295057e-02	ci left: 2.844150e-03	ci right 2.939638e-03	k: 14111	n:4880000
OR6C4   4880000 perm   9628 sec   (507 perm/sec)   p_kst 2.891598e-03   p_cons 5.661885e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 7.451386e-02	ci left: 5.445637e-04	ci right 5.869106e-04	k: 2765	n:4890000
KS ci ratio: 3.291093e-02	ci left: 2.845230e-03	ci right 2.940636e-03	k: 14145	n:4890000
OR6C4   4890000 perm   9666 sec   (506 perm/sec)   p_kst 2.892638e-03   p_cons 5.654397e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 7.443317e-02	ci left: 5.446541e-04	ci right 5.869601e-04	k: 2771	n:4900000
KS ci ratio: 3.287608e-02	ci left: 2.845495e-03	ci right 2.940808e-03	k: 14175	n:4900000
OR6C4   4900000 perm   9704 sec   (505 perm/sec)   p_kst 2.892857e-03   p_cons 5.655102e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 7.435275e-02	ci left: 5.447441e-04	ci right 5.870094e-04	k: 2777	n:4910000
KS ci ratio: 3.283439e-02	ci left: 2.846972e-03	ci right 2.942211e-03	k: 14211	n:4910000
OR6C4   4910000 perm   9742 sec   (504 perm/sec)   p_kst 2.894297e-03   p_cons 5.655804e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 7.427258e-02	ci left: 5.448337e-04	ci right 5.870585e-04	k: 2783	n:4920000
KS ci ratio: 3.280210e-02	ci left: 2.846830e-03	ci right 2.941968e-03	k: 14239	n:4920000
OR6C4   4920000 perm   9780 sec   (503 perm/sec)   p_kst 2.894106e-03   p_cons 5.656504e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 7.417937e-02	ci left: 5.451221e-04	ci right 5.873139e-04	k: 2790	n:4930000
KS ci ratio: 3.275839e-02	ci left: 2.848700e-03	ci right 2.943772e-03	k: 14277	n:4930000
OR6C4   4930000 perm   9821 sec   (502 perm/sec)   p_kst 2.895943e-03   p_cons 5.659229e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 7.408651e-02	ci left: 5.454093e-04	ci right 5.875683e-04	k: 2797	n:4940000
KS ci ratio: 3.272402e-02	ci left: 2.848956e-03	ci right 2.943935e-03	k: 14307	n:4940000
OR6C4   4940000 perm   9859 sec   (501 perm/sec)   p_kst 2.896154e-03   p_cons 5.661943e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 7.399400e-02	ci left: 5.456955e-04	ci right 5.878216e-04	k: 2804	n:4950000
KS ci ratio: 3.268977e-02	ci left: 2.849212e-03	ci right 2.944098e-03	k: 14337	n:4950000
OR6C4   4950000 perm   9898 sec   (500 perm/sec)   p_kst 2.896364e-03   p_cons 5.664646e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 7.387555e-02	ci left: 5.463763e-04	ci right 5.884845e-04	k: 2813	n:4960000
KS ci ratio: 3.266360e-02	ci left: 2.848067e-03	ci right 2.942837e-03	k: 14360	n:4960000
OR6C4   4960000 perm   9936 sec   (499 perm/sec)   p_kst 2.895161e-03   p_cons 5.671371e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 7.383623e-02	ci left: 5.458694e-04	ci right 5.879152e-04	k: 2816	n:4970000
KS ci ratio: 3.261476e-02	ci left: 2.850918e-03	ci right 2.945639e-03	k: 14403	n:4970000
OR6C4   4970000 perm   9974 sec   (498 perm/sec)   p_kst 2.897988e-03   p_cons 5.665996e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 7.377079e-02	ci left: 5.457587e-04	ci right 5.877572e-04	k: 2821	n:4980000
KS ci ratio: 3.258424e-02	ci left: 2.850570e-03	ci right 2.945190e-03	k: 14430	n:4980000
OR6C4   4980000 perm   10012 sec   (497 perm/sec)   p_kst 2.897590e-03   p_cons 5.664659e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 7.370553e-02	ci left: 5.456486e-04	ci right 5.875998e-04	k: 2826	n:4990000
KS ci ratio: 3.254591e-02	ci left: 2.851616e-03	ci right 2.946157e-03	k: 14464	n:4990000
OR6C4   4990000 perm   10052 sec   (496 perm/sec)   p_kst 2.898597e-03   p_cons 5.663327e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 7.360144e-02	ci left: 5.461278e-04	ci right 5.880541e-04	k: 2834	n:5000000
KS ci ratio: 3.252009e-02	ci left: 2.850475e-03	ci right 2.944902e-03	k: 14487	n:5000000
OR6C4   5000000 perm   10090 sec   (496 perm/sec)   p_kst 2.897400e-03   p_cons 5.668000e-04   p_joint 0

Outputting figure to mutsig2_images.part000000000123/OR6C4.3_932_5000000_0.0028974_0.0005668_0.png
                gene_name: OR6C4
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0029 
                   p_cons: 0.00057 
      ci_cons_bounds_left: 0.00055 
     ci_cons_bounds_right: 0.00059 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 79 percent done.
OR6C65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
Cons ci ratio: 2.785170e-02	ci left: 6.551489e-01	ci right 6.737553e-01	k: 6645	n:10000
KS ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
OR6C65   10000 perm   2 sec   (6452 perm/sec)   p_kst 2.819000e-01   p_cons 6.645000e-01   p_joint 4.913000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C65.3_941_10000_0.2819_0.6645_0.4913.png
                gene_name: OR6C65
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 80 percent done.
OR6S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
Cons ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
OR6S1   10000 perm   2 sec   (6651 perm/sec)   p_kst 9.097000e-01   p_cons 3.261000e-01   p_joint 7.699000e-01

Outputting figure to mutsig2_images.part000000000123/OR6S1.3_1000_10000_0.9097_0.3261_0.7699.png
                gene_name: OR6S1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 82 percent done.
OR7C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
Cons ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
KS ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
OR7C1   10000 perm   2 sec   (6452 perm/sec)   p_kst 3.027000e-01   p_cons 5.604000e-01   p_joint 4.879000e-01

Outputting figure to mutsig2_images.part000000000123/OR7C1.3_965_10000_0.3027_0.5604_0.4879.png
                gene_name: OR7C1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 83 percent done.
OR7C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
Cons ci ratio: 1.382680e-02	ci left: 8.830891e-01	ci right 8.954831e-01	k: 8894	n:10000
KS ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
OR7C2   10000 perm   2 sec   (6423 perm/sec)   p_kst 1.747000e-01   p_cons 8.894000e-01   p_joint 2.952000e-01

Outputting figure to mutsig2_images.part000000000123/OR7C2.3_963_10000_0.1747_0.8894_0.2952.png
                gene_name: OR7C2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 84 percent done.
OR7G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
KS ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
OR7G2   10000 perm   2 sec   (6600 perm/sec)   p_kst 6.388000e-01   p_cons 7.097000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7G2.3_1040_10000_0.6388_0.7097_1.png
                gene_name: OR7G2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
OR8D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
Cons ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
KS ci ratio: 6.095056e-02	ci left: 2.835954e-01	ci right 3.015256e-01	k: 2925	n:10000
OR8D1   10000 perm   2 sec   (6580 perm/sec)   p_kst 2.925000e-01   p_cons 8.380000e-02   p_joint 9.380000e-02

Joint ci ratio: 5.920113e-02	ci left: 1.744503e-01	ci right 1.851430e-01	k: 3595	n:20000
Cons ci ratio: 9.192024e-02	ci left: 7.950603e-02	ci right 8.721561e-02	k: 1666	n:20000
KS ci ratio: 4.334993e-02	ci left: 2.838662e-01	ci right 2.964949e-01	k: 5803	n:20000
OR8D1   20000 perm   3 sec   (5859 perm/sec)   p_kst 2.901500e-01   p_cons 8.330000e-02   p_joint 1.797500e-01

Outputting figure to mutsig2_images.part000000000123/OR8D1.3_930_20000_0.29015_0.0833_0.17975.png
                gene_name: OR8D1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 87 percent done.
OR5V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
Cons ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
KS ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
OR5V1   10000 perm   1 sec   (6736 perm/sec)   p_kst 5.484000e-01   p_cons 2.394000e-01   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000123/OR5V1.2_969_10000_0.5484_0.2394_0.4018.png
                gene_name: OR5V1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 88 percent done.
OR6B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
OR6B1   10000 perm   1 sec   (6885 perm/sec)   p_kst 9.073000e-01   p_cons 3.343000e-01   p_joint 4.578000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B1.2_940_10000_0.9073_0.3343_0.4578.png
                gene_name: OR6B1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 89 percent done.
OR6B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
Cons ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
KS ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
OR6B2   10000 perm   1 sec   (6825 perm/sec)   p_kst 5.121000e-01   p_cons 2.529000e-01   p_joint 2.745000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B2.2_941_10000_0.5121_0.2529_0.2745.png
                gene_name: OR6B2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 90 percent done.
OR6B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
Cons ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
KS ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
OR6B3   10000 perm   1 sec   (6821 perm/sec)   p_kst 7.862000e-01   p_cons 5.435000e-01   p_joint 6.850000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B3.2_999_10000_0.7862_0.5435_0.685.png
                gene_name: OR6B3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 91 percent done.
OR6C70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
OR6C70   10000 perm   1 sec   (7105 perm/sec)   p_kst 3.462000e-01   p_cons 9.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6C70.2_941_10000_0.3462_0.975_1.png
                gene_name: OR6C70
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
OR7A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
Cons ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
KS ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
OR7A10   10000 perm   1 sec   (6854 perm/sec)   p_kst 5.220000e-02   p_cons 6.279000e-01   p_joint 3.784000e-01

Joint ci ratio: 6.558420e-02	ci left: 1.465570e-01	ci right 1.565446e-01	k: 3030	n:20000
Cons ci ratio: 2.251323e-02	ci left: 5.956781e-01	ci right 6.092920e-01	k: 12050	n:20000
KS ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
OR7A10   20000 perm   3 sec   (6050 perm/sec)   p_kst 5.225000e-02   p_cons 6.025000e-01   p_joint 1.515000e-01

Joint ci ratio: 3.112695e-02	ci left: 3.404163e-01	ci right 3.512135e-01	k: 10374	n:30000
Cons ci ratio: 1.837079e-02	ci left: 5.972365e-01	ci right 6.083435e-01	k: 18084	n:30000
KS ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
OR7A10   30000 perm   5 sec   (5706 perm/sec)   p_kst 5.190000e-02   p_cons 6.028000e-01   p_joint 3.458000e-01

Outputting figure to mutsig2_images.part000000000123/OR7A10.2_934_30000_0.0519_0.6028_0.3458.png
                gene_name: OR7A10
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 94 percent done.
OR7A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
Cons ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
KS ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
OR7A5   10000 perm   1 sec   (6715 perm/sec)   p_kst 8.339000e-01   p_cons 3.583000e-01   p_joint 6.681000e-01

Outputting figure to mutsig2_images.part000000000123/OR7A5.2_964_10000_0.8339_0.3583_0.6681.png
                gene_name: OR7A5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 95 percent done.
OR7D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
OR7D4   10000 perm   1 sec   (6837 perm/sec)   p_kst 2.170000e-02   p_cons 9.925000e-01   p_joint 3.250000e-01

Joint ci ratio: 4.067717e-02	ci left: 3.106030e-01	ci right 3.235502e-01	k: 6341	n:20000
Cons ci ratio: 2.677968e-03	ci left: 9.893780e-01	ci right 9.920765e-01	k: 19816	n:20000
KS ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
OR7D4   20000 perm   3 sec   (6010 perm/sec)   p_kst 2.195000e-02   p_cons 9.908000e-01   p_joint 3.170500e-01

Joint ci ratio: 2.574102e-02	ci left: 4.303451e-01	ci right 4.416006e-01	k: 13079	n:30000
Cons ci ratio: 2.176680e-03	ci left: 9.897246e-01	ci right 9.919121e-01	k: 29726	n:30000
KS ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
OR7D4   30000 perm   5 sec   (5712 perm/sec)   p_kst 2.086667e-02   p_cons 9.908667e-01   p_joint 4.359667e-01

Joint ci ratio: 2.496422e-02	ci left: 3.765614e-01	ci right 3.861059e-01	k: 15253	n:40000
Cons ci ratio: 1.893728e-03	ci left: 9.897891e-01	ci right 9.916886e-01	k: 39631	n:40000
KS ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
OR7D4   40000 perm   7 sec   (5490 perm/sec)   p_kst 2.110000e-02   p_cons 9.907750e-01   p_joint 3.813250e-01

Joint ci ratio: 2.429923e-02	ci left: 3.381403e-01	ci right 3.464780e-01	k: 17115	n:50000
Cons ci ratio: 1.725876e-03	ci left: 9.895271e-01	ci right 9.912552e-01	k: 49521	n:50000
KS ci ratio: 1.189458e-01	ci left: 1.999405e-02	ci right 2.254195e-02	k: 1062	n:50000
OR7D4   50000 perm   9 sec   (5317 perm/sec)   p_kst 2.124000e-02   p_cons 9.904200e-01   p_joint 3.423000e-01

Joint ci ratio: 2.456629e-02	ci left: 2.942587e-01	ci right 3.015941e-01	k: 17875	n:60000
Cons ci ratio: 1.596099e-03	ci left: 9.893446e-01	ci right 9.909408e-01	k: 59410	n:60000
KS ci ratio: 1.086519e-01	ci left: 2.007847e-02	ci right 2.240150e-02	k: 1273	n:60000
OR7D4   60000 perm   12 sec   (5172 perm/sec)   p_kst 2.121667e-02   p_cons 9.901667e-01   p_joint 2.979167e-01

Joint ci ratio: 2.204704e-02	ci left: 3.076713e-01	ci right 3.145444e-01	k: 21777	n:70000
Cons ci ratio: 1.399415e-03	ci left: 9.904506e-01	ci right 9.918511e-01	k: 69382	n:70000
KS ci ratio: 1.011968e-01	ci left: 1.992270e-02	ci right 2.206012e-02	k: 1468	n:70000
OR7D4   70000 perm   14 sec   (5033 perm/sec)   p_kst 2.097143e-02   p_cons 9.911714e-01   p_joint 3.111000e-01

Joint ci ratio: 2.059678e-02	ci left: 3.084411e-01	ci right 3.148726e-01	k: 24932	n:80000
Cons ci ratio: 1.314230e-03	ci left: 9.904248e-01	ci right 9.917392e-01	k: 79288	n:80000
KS ci ratio: 9.491707e-02	ci left: 1.988326e-02	ci right 2.187670e-02	k: 1669	n:80000
OR7D4   80000 perm   16 sec   (4932 perm/sec)   p_kst 2.086250e-02   p_cons 9.911000e-01   p_joint 3.116500e-01

Outputting figure to mutsig2_images.part000000000123/OR7D4.2_943_80000_0.020862_0.9911_0.31165.png
                gene_name: OR7D4
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.31 

Current progress: 96 percent done.
OR7G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
OR7G3   10000 perm   1 sec   (6859 perm/sec)   p_kst 8.983000e-01   p_cons 2.516000e-01   p_joint 2.856000e-01

Outputting figure to mutsig2_images.part000000000123/OR7G3.2_942_10000_0.8983_0.2516_0.2856.png
                gene_name: OR7G3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 98 percent done.
OR8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
OR8A1   10000 perm   1 sec   (6949 perm/sec)   p_kst 6.729000e-01   p_cons 7.089000e-01   p_joint 8.818000e-01

Outputting figure to mutsig2_images.part000000000123/OR8A1.2_984_10000_0.6729_0.7089_0.8818.png
                gene_name: OR8A1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 99 percent done.
OR8B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
KS ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
OR8B12   10000 perm   1 sec   (7060 perm/sec)   p_kst 8.997000e-01   p_cons 9.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR8B12.2_935_10000_0.8997_0.9318_1.png
                gene_name: OR8B12
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000123
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 123 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4422277: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000124> was used as the working directory.
Started at Wed Oct 24 18:02:02 2012
Results reported at Wed Oct 24 19:57:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000124.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000124.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 124  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000124.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6943.28 sec.
    Max Memory :      8703 MB
    Max Swap   :     11088 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
124
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 124
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 124: processing genes 11129 - 11218
Calculating significance of each gene.
Using projection method.
11129	OR9I1	2.837014e-01
11130	OR9K2	1
11131	OR9Q1	3.990506e-01
11132	OR9Q2	1
11133	ORAI1	7.568911e-01
11134	ORAI2	6.271504e-01
11135	ORAI3	6.782600e-01
11136	ORAOV1	1
11137	ORC1L	9.347975e-01
11138	ORC2L	9.093301e-01
11139	ORC3L	9.430375e-01
11140	ORC4L	7.429299e-01
11141	ORC5L	7.145020e-02
11142	ORC6L	7.186242e-01
11143	ORM1	7.180956e-02
11144	ORM2	1
11145	ORMDL1	1
11146	ORMDL2	1
11147	ORMDL3	1
11148	OS9	8.995390e-01
11149	OSBP	8.740569e-01
11150	OSBP2	1
11151	OSBPL10	4.072569e-01
11152	OSBPL11	8.297060e-01
11153	OSBPL1A	5.180340e-01
11154	OSBPL2	1
11155	OSBPL3	6.269887e-01
11156	OSBPL5	9.826681e-01
11157	OSBPL6	2.436706e-01
11158	OSBPL7	5.563372e-01
11159	OSBPL8	9.779614e-01
11160	OSBPL9	9.347559e-01
11161	OSCAR	5.985953e-01
11162	OSCP1	8.188108e-01
11163	OSGEP	8.185525e-01
11164	OSGEPL1	1
11165	OSGIN1	7.409122e-01
11166	OSGIN2	6.516235e-01
11167	OSM	3.509658e-01
11168	OSMR	1
11169	OSR1	4.238821e-01
11170	OSR2	1
11171	OSTBETA	1
11172	OSTC	2.676705e-01
11173	OSTF1	5.878202e-01
11174	OSTM1	6.651126e-01
11175	OSTN	3.584104e-02
11176	OSTalpha	1
11177	OTC	1.336660e-01
11178	OTOA	3.062476e-01
11179	OTOF	9.917101e-01
11180	OTOL1	3.584350e-01
11181	OTOP1	1.876974e-01
11182	OTOP2	8.860395e-01
11183	OTOP3	9.684037e-01
11184	OTOR	3.518925e-01
11185	OTOS	1
11186	OTP	1.431091e-01
11187	OTUB1	1
11188	OTUB2	6.559434e-01
11189	OTUD3	1
11190	OTUD4	2.048479e-01
11191	OTUD5	1.642683e-01
11192	OTUD6A	7.544901e-02
11193	OTUD6B	6.974331e-01
11194	OTUD7A	7.776469e-01
11195	OTUD7B	5.537513e-01
11196	OTX1	7.999703e-01
11197	OTX2	6.232483e-01
11198	OVCA2	1
11199	OVCH1	3.334172e-01
11200	OVCH2	3.035801e-01
11201	OVGP1	9.872245e-01
11202	OVOL1	2.517252e-01
11203	OVOL2	7.801012e-02
11204	OXA1L	1
11205	OXCT1	4.384432e-01
11206	OXCT2	1
11207	OXER1	7.737479e-01
11208	OXGR1	2.479740e-01
11209	OXNAD1	6.500084e-01
11210	OXR1	9.861998e-01
11211	OXSM	1.695689e-01
11212	OXSR1	9.398683e-01
11213	OXT	3.589333e-01
11214	OXTR	1
11215	P2RX1	1
11216	P2RX2	2.653658e-01
11217	P2RX3	8.455781e-01
11218	P2RX4	1
Done

Running MutSig 2:
Scatter job 124: processing genes 11129 - 11218
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OVCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
Cons ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
OVCH1   10000 perm   2 sec   (4039 perm/sec)   p_kst 4.581000e-01   p_cons 5.828000e-01   p_joint 5.831000e-01

Outputting figure to mutsig2_images.part000000000124/OVCH1.26_3517_10000_0.4581_0.5828_0.5831.png
                gene_name: OVCH1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 2 percent done.
OTOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
Cons ci ratio: 7.329722e-02	ci left: 2.141824e-01	ci right 2.305796e-01	k: 2223	n:10000
KS ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
OTOF   10000 perm   2 sec   (4306 perm/sec)   p_kst 3.233000e-01   p_cons 2.223000e-01   p_joint 3.496000e-01

Outputting figure to mutsig2_images.part000000000124/OTOF.13_6507_10000_0.3233_0.2223_0.3496.png
                gene_name: OTOF
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 4 percent done.
OTUD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
KS ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
OTUD7B   10000 perm   2 sec   (5608 perm/sec)   p_kst 8.956000e-01   p_cons 9.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTUD7B.11_2576_10000_0.8956_0.9324_1.png
                gene_name: OTUD7B
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
OSBPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
Cons ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
KS ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
OSBPL3   10000 perm   2 sec   (5077 perm/sec)   p_kst 5.858000e-01   p_cons 2.772000e-01   p_joint 4.777000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL3.10_2752_10000_0.5858_0.2772_0.4777.png
                gene_name: OSBPL3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 7 percent done.
OTOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
Cons ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
KS ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
OTOA   10000 perm   2 sec   (4816 perm/sec)   p_kst 2.019000e-01   p_cons 9.806000e-01   p_joint 3.253000e-01

Outputting figure to mutsig2_images.part000000000124/OTOA.9_3578_10000_0.2019_0.9806_0.3253.png
                gene_name: OTOA
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 9 percent done.
OTUD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
OTUD4   10000 perm   2 sec   (5144 perm/sec)   p_kst 7.631000e-01   p_cons 4.069000e-01   p_joint 7.926000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD4.9_3234_10000_0.7631_0.4069_0.7926.png
                gene_name: OTUD4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 11 percent done.
OR9K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
Cons ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
KS ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
OR9K2   10000 perm   2 sec   (6168 perm/sec)   p_kst 6.750000e-02   p_cons 2.280000e-01   p_joint 1.685000e-01

Joint ci ratio: 9.036206e-02	ci left: 8.210084e-02	ci right 8.992001e-02	k: 1719	n:20000
Cons ci ratio: 4.859271e-02	ci left: 2.394980e-01	ci right 2.514760e-01	k: 4909	n:20000
KS ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
OR9K2   20000 perm   4 sec   (5562 perm/sec)   p_kst 6.465000e-02   p_cons 2.454500e-01   p_joint 8.595000e-02

Joint ci ratio: 7.381212e-02	ci left: 8.275265e-02	ci right 8.912780e-02	k: 2577	n:30000
Cons ci ratio: 3.990210e-02	ci left: 2.385192e-01	ci right 2.482638e-01	k: 7301	n:30000
KS ci ratio: 8.488528e-02	ci left: 6.354265e-02	ci right 6.920834e-02	k: 1990	n:30000
OR9K2   30000 perm   6 sec   (5315 perm/sec)   p_kst 6.633333e-02   p_cons 2.433667e-01   p_joint 8.590000e-02

Outputting figure to mutsig2_images.part000000000124/OR9K2.8_1011_30000_0.066333_0.24337_0.0859.png
                gene_name: OR9K2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 13 percent done.
OSBPL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.392992e-02	ci left: 7.196677e-01	ci right 7.371991e-01	k: 7285	n:10000
KS ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
OSBPL8   10000 perm   2 sec   (5591 perm/sec)   p_kst 7.480000e-01   p_cons 7.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSBPL8.8_2762_10000_0.748_0.7285_1.png
                gene_name: OSBPL8
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
OR9I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
Cons ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
OR9I1   10000 perm   2 sec   (6489 perm/sec)   p_kst 9.539000e-01   p_cons 3.395000e-01   p_joint 6.918000e-01

Outputting figure to mutsig2_images.part000000000124/OR9I1.7_949_10000_0.9539_0.3395_0.6918.png
                gene_name: OR9I1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 16 percent done.
OSBPL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
OSBPL10   10000 perm   2 sec   (5382 perm/sec)   p_kst 5.090000e-02   p_cons 5.038000e-01   p_joint 1.117000e-01

Joint ci ratio: 6.995294e-02	ci left: 1.309326e-01	ci right 1.404735e-01	k: 2713	n:20000
Cons ci ratio: 2.816635e-02	ci left: 4.849980e-01	ci right 4.989044e-01	k: 9839	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
OSBPL10   20000 perm   4 sec   (4896 perm/sec)   p_kst 5.360000e-02   p_cons 4.919500e-01   p_joint 1.356500e-01

Joint ci ratio: 6.784527e-02	ci left: 9.672591e-02	ci right 1.035518e-01	k: 3003	n:30000
Cons ci ratio: 2.383202e-02	ci left: 4.685024e-01	ci right 4.798360e-01	k: 14225	n:30000
KS ci ratio: 9.357116e-02	ci left: 5.267489e-02	ci right 5.787832e-02	k: 1657	n:30000
OSBPL10   30000 perm   6 sec   (4700 perm/sec)   p_kst 5.523333e-02   p_cons 4.741667e-01   p_joint 1.001000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL10.7_2343_30000_0.055233_0.47417_0.1001.png
                gene_name: OSBPL10
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 18 percent done.
OSBPL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 4.289489e-02	ci left: 4.452043e-01	ci right 4.648220e-01	k: 4550	n:10000
OSBPL1A   10000 perm   2 sec   (5453 perm/sec)   p_kst 4.550000e-01   p_cons 4.422000e-01   p_joint 6.186000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL1A.7_2961_10000_0.455_0.4422_0.6186.png
                gene_name: OSBPL1A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 20 percent done.
OSBPL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
Cons ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
OSBPL6   10000 perm   2 sec   (5270 perm/sec)   p_kst 6.900000e-02   p_cons 2.172000e-01   p_joint 9.030000e-02

Joint ci ratio: 7.154726e-02	ci left: 1.258113e-01	ci right 1.351964e-01	k: 2609	n:20000
Cons ci ratio: 5.232140e-02	ci left: 2.133835e-01	ci right 2.248982e-01	k: 4382	n:20000
KS ci ratio: 1.006450e-01	ci left: 6.694105e-02	ci right 7.408442e-02	k: 1409	n:20000
OSBPL6   20000 perm   4 sec   (4815 perm/sec)   p_kst 7.045000e-02   p_cons 2.191000e-01   p_joint 1.304500e-01

Joint ci ratio: 7.420644e-02	ci left: 8.193338e-02	ci right 8.828057e-02	k: 2552	n:30000
Cons ci ratio: 4.350305e-02	ci left: 2.083452e-01	ci right 2.176438e-01	k: 6389	n:30000
KS ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
OSBPL6   30000 perm   6 sec   (4619 perm/sec)   p_kst 7.120000e-02   p_cons 2.129667e-01   p_joint 8.506667e-02

Outputting figure to mutsig2_images.part000000000124/OSBPL6.7_3019_30000_0.0712_0.21297_0.085067.png
                gene_name: OSBPL6
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 22 percent done.
OTOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
OTOP1   10000 perm   2 sec   (5553 perm/sec)   p_kst 6.144000e-01   p_cons 4.660000e-02   p_joint 1.907000e-01

Joint ci ratio: 5.800486e-02	ci left: 1.804800e-01	ci right 1.913115e-01	k: 3717	n:20000
Cons ci ratio: 1.331252e-01	ci left: 3.877774e-02	ci right 4.435654e-02	k: 830	n:20000
KS ci ratio: 2.204377e-02	ci left: 6.057574e-01	ci right 6.193099e-01	k: 12251	n:20000
OTOP1   20000 perm   4 sec   (5088 perm/sec)   p_kst 6.125500e-01   p_cons 4.150000e-02   p_joint 1.858500e-01

Joint ci ratio: 6.170688e-02	ci left: 1.148960e-01	ci right 1.222447e-01	k: 3556	n:30000
Cons ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
KS ci ratio: 1.799960e-02	ci left: 6.069932e-01	ci right 6.180516e-01	k: 18376	n:30000
OTOP1   30000 perm   6 sec   (4895 perm/sec)   p_kst 6.125333e-01   p_cons 4.110000e-02   p_joint 1.185333e-01

Joint ci ratio: 5.534874e-02	ci left: 1.083325e-01	ci right 1.145240e-01	k: 4456	n:40000
Cons ci ratio: 9.518537e-02	ci left: 3.873566e-02	ci right 4.263138e-02	k: 1626	n:40000
KS ci ratio: 1.563206e-02	ci left: 6.064024e-01	ci right 6.159815e-01	k: 24448	n:40000
OTOP1   40000 perm   8 sec   (4767 perm/sec)   p_kst 6.112000e-01   p_cons 4.065000e-02   p_joint 1.114000e-01

Outputting figure to mutsig2_images.part000000000124/OTOP1.7_1863_40000_0.6112_0.04065_0.1114.png
                gene_name: OTOP1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 24 percent done.
OSBPL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
Cons ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
OSBPL7   10000 perm   2 sec   (5949 perm/sec)   p_kst 8.690000e-02   p_cons 7.864000e-01   p_joint 1.697000e-01

Joint ci ratio: 5.426046e-02	ci left: 2.013038e-01	ci right 2.125815e-01	k: 4138	n:20000
Cons ci ratio: 1.449351e-02	ci left: 7.795430e-01	ci right 7.909739e-01	k: 15706	n:20000
KS ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
OSBPL7   20000 perm   4 sec   (5372 perm/sec)   p_kst 8.205000e-02   p_cons 7.853000e-01   p_joint 2.069000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL7.6_2617_20000_0.08205_0.7853_0.2069.png
                gene_name: OSBPL7
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 25 percent done.
OTUD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KS ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
OTUD7A   10000 perm   2 sec   (5862 perm/sec)   p_kst 1.730000e-02   p_cons 3.000000e-04   p_joint 1.420000e-02

Joint ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
OTUD7A   20000 perm   4 sec   (5270 perm/sec)   p_kst 1.465000e-02   p_cons 1.000000e-04   p_joint 5.300000e-03

Joint ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
Cons ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
KS ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
OTUD7A   30000 perm   6 sec   (5041 perm/sec)   p_kst 1.520000e-02   p_cons 8.333333e-04   p_joint 3.700000e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
KS ci ratio: 1.590960e-01	ci left: 1.375956e-02	ci right 1.616161e-02	k: 597	n:40000
OTUD7A   40000 perm   8 sec   (4890 perm/sec)   p_kst 1.492500e-02   p_cons 7.250000e-04   p_joint 2.875000e-03

Joint ci ratio: 4.105495e-01	ci left: 1.447653e-03	ci right 2.212049e-03	k: 90	n:50000
Cons ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
KS ci ratio: 1.428346e-01	ci left: 1.377912e-02	ci right 1.591775e-02	k: 741	n:50000
OTUD7A   50000 perm   10 sec   (4774 perm/sec)   p_kst 1.482000e-02   p_cons 7.600000e-04   p_joint 1.800000e-03

Joint ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
Cons ci ratio: 5.841351e-01	ci left: 5.328901e-04	ci right 9.843421e-04	k: 44	n:60000
KS ci ratio: 1.310185e-01	ci left: 1.373609e-02	ci right 1.567793e-02	k: 881	n:60000
OTUD7A   60000 perm   13 sec   (4676 perm/sec)   p_kst 1.468333e-02   p_cons 7.333333e-04   p_joint 5.066667e-03

Joint ci ratio: 2.182893e-01	ci left: 4.085191e-03	ci right 5.099406e-03	k: 320	n:70000
Cons ci ratio: 5.541697e-01	ci left: 5.179073e-04	ci right 9.253328e-04	k: 49	n:70000
KS ci ratio: 1.211206e-01	ci left: 1.384919e-02	ci right 1.564850e-02	k: 1031	n:70000
OTUD7A   70000 perm   15 sec   (4586 perm/sec)   p_kst 1.472857e-02   p_cons 7.000000e-04   p_joint 4.571429e-03

Joint ci ratio: 2.169990e-01	ci left: 3.621719e-03	ci right 4.514837e-03	k: 324	n:80000
Cons ci ratio: 5.145314e-01	ci left: 5.396838e-04	ci right 9.230292e-04	k: 57	n:80000
KS ci ratio: 1.138098e-01	ci left: 1.378023e-02	ci right 1.545525e-02	k: 1168	n:80000
OTUD7A   80000 perm   18 sec   (4509 perm/sec)   p_kst 1.460000e-02   p_cons 7.125000e-04   p_joint 4.050000e-03

Joint ci ratio: 1.661815e-01	ci left: 5.633667e-03	ci right 6.665220e-03	k: 552	n:90000
Cons ci ratio: 4.976662e-01	ci left: 5.184847e-04	ci right 8.705499e-04	k: 61	n:90000
KS ci ratio: 1.068535e-01	ci left: 1.394549e-02	ci right 1.553046e-02	k: 1325	n:90000
OTUD7A   90000 perm   20 sec   (4428 perm/sec)   p_kst 1.472222e-02   p_cons 6.777778e-04   p_joint 6.133333e-03

Joint ci ratio: 1.596856e-01	ci left: 5.511519e-03	ci right 6.477472e-03	k: 598	n:100000
Cons ci ratio: 4.717474e-01	ci left: 5.280841e-04	ci right 8.619835e-04	k: 68	n:100000
KS ci ratio: 1.018743e-01	ci left: 1.384619e-02	ci right 1.534216e-02	k: 1458	n:100000
OTUD7A   100000 perm   23 sec   (4358 perm/sec)   p_kst 1.458000e-02   p_cons 6.800000e-04   p_joint 5.980000e-03

Joint ci ratio: 1.585363e-01	ci left: 5.088943e-03	ci right 5.973798e-03	k: 607	n:110000
Cons ci ratio: 4.494974e-01	ci left: 5.363298e-04	ci right 8.545911e-04	k: 75	n:110000
KS ci ratio: 9.759418e-02	ci left: 1.374862e-02	ci right 1.516806e-02	k: 1589	n:110000
OTUD7A   110000 perm   26 sec   (4292 perm/sec)   p_kst 1.444545e-02   p_cons 6.818182e-04   p_joint 5.518182e-03

Joint ci ratio: 2.576676e-01	ci left: 1.677143e-03	ci right 2.180748e-03	k: 230	n:120000
Cons ci ratio: 4.354067e-01	ci left: 5.286595e-04	ci right 8.296567e-04	k: 80	n:120000
KS ci ratio: 9.513845e-02	ci left: 1.328588e-02	ci right 1.462109e-02	k: 1673	n:120000
OTUD7A   120000 perm   28 sec   (4228 perm/sec)   p_kst 1.394167e-02   p_cons 6.666667e-04   p_joint 1.916667e-03

Joint ci ratio: 2.502026e-01	ci left: 1.648968e-03	ci right 2.127534e-03	k: 244	n:130000
Cons ci ratio: 4.153753e-01	ci left: 5.429464e-04	ci right 8.339227e-04	k: 88	n:130000
KS ci ratio: 9.129129e-02	ci left: 1.334578e-02	ci right 1.462988e-02	k: 1817	n:130000
OTUD7A   130000 perm   31 sec   (4167 perm/sec)   p_kst 1.397692e-02   p_cons 6.769231e-04   p_joint 1.876923e-03

Joint ci ratio: 3.547442e-01	ci left: 7.172116e-04	ci right 1.032624e-03	k: 121	n:140000
Cons ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
KS ci ratio: 8.810401e-02	ci left: 1.332818e-02	ci right 1.456350e-02	k: 1951	n:140000
OTUD7A   140000 perm   34 sec   (4107 perm/sec)   p_kst 1.393571e-02   p_cons 4.428571e-04   p_joint 8.642857e-04

Joint ci ratio: 2.155507e-01	ci left: 1.962926e-03	ci right 2.443307e-03	k: 329	n:150000
Cons ci ratio: 4.861092e-01	ci left: 3.286003e-04	ci right 5.448116e-04	k: 64	n:150000
KS ci ratio: 8.500184e-02	ci left: 1.338539e-02	ci right 1.458017e-02	k: 2096	n:150000
OTUD7A   150000 perm   37 sec   (4046 perm/sec)   p_kst 1.397333e-02   p_cons 4.266667e-04   p_joint 2.193333e-03

Joint ci ratio: 2.066568e-01	ci left: 2.011920e-03	ci right 2.481409e-03	k: 358	n:160000
Cons ci ratio: 4.788024e-01	ci left: 3.190414e-04	ci right 5.247717e-04	k: 66	n:160000
KS ci ratio: 8.250493e-02	ci left: 1.333816e-02	ci right 1.449206e-02	k: 2225	n:160000
OTUD7A   160000 perm   40 sec   (3988 perm/sec)   p_kst 1.390625e-02   p_cons 4.125000e-04   p_joint 2.237500e-03

Joint ci ratio: 2.027465e-01	ci left: 1.971699e-03	ci right 2.422018e-03	k: 372	n:170000
Cons ci ratio: 4.752733e-01	ci left: 3.054484e-04	ci right 5.004889e-04	k: 67	n:170000
KS ci ratio: 7.990675e-02	ci left: 1.340072e-02	ci right 1.452183e-02	k: 2372	n:170000
OTUD7A   170000 perm   43 sec   (3934 perm/sec)   p_kst 1.395294e-02   p_cons 3.941176e-04   p_joint 2.188235e-03

Joint ci ratio: 2.253807e-01	ci left: 1.488759e-03	ci right 1.872022e-03	k: 301	n:180000
Cons ci ratio: 3.686458e-01	ci left: 5.123626e-04	ci right 7.486477e-04	k: 112	n:180000
KS ci ratio: 7.790085e-02	ci left: 1.333151e-02	ci right 1.441756e-02	k: 2496	n:180000
OTUD7A   180000 perm   46 sec   (3882 perm/sec)   p_kst 1.386667e-02   p_cons 6.222222e-04   p_joint 1.672222e-03

Joint ci ratio: 2.213883e-01	ci left: 1.465056e-03	ci right 1.834626e-03	k: 312	n:190000
Cons ci ratio: 3.533391e-01	ci left: 5.332572e-04	ci right 7.666268e-04	k: 122	n:190000
KS ci ratio: 7.576081e-02	ci left: 1.336804e-02	ci right 1.442582e-02	k: 2639	n:190000
OTUD7A   190000 perm   50 sec   (3829 perm/sec)   p_kst 1.388947e-02   p_cons 6.421053e-04   p_joint 1.642105e-03

Joint ci ratio: 2.257744e-01	ci left: 1.335153e-03	ci right 1.679555e-03	k: 300	n:200000
Cons ci ratio: 3.436941e-01	ci left: 5.385315e-04	ci right 7.663465e-04	k: 129	n:200000
KS ci ratio: 7.400401e-02	ci left: 1.332273e-02	ci right 1.435143e-02	k: 2766	n:200000
OTUD7A   200000 perm   53 sec   (3776 perm/sec)   p_kst 1.383000e-02   p_cons 6.450000e-04   p_joint 1.500000e-03

Joint ci ratio: 2.273000e-01	ci left: 1.253602e-03	ci right 1.579458e-03	k: 296	n:210000
Cons ci ratio: 3.335821e-01	ci left: 5.477442e-04	ci right 7.711751e-04	k: 137	n:210000
KS ci ratio: 7.207413e-02	ci left: 1.338957e-02	ci right 1.439534e-02	k: 2916	n:210000
OTUD7A   210000 perm   56 sec   (3729 perm/sec)   p_kst 1.388571e-02   p_cons 6.523810e-04   p_joint 1.409524e-03

Joint ci ratio: 2.458201e-01	ci left: 1.012715e-03	ci right 1.300687e-03	k: 253	n:220000
Cons ci ratio: 3.288522e-01	ci left: 5.395164e-04	ci right 7.558108e-04	k: 141	n:220000
KS ci ratio: 7.059182e-02	ci left: 1.333452e-02	ci right 1.431471e-02	k: 3040	n:220000
OTUD7A   220000 perm   60 sec   (3682 perm/sec)   p_kst 1.381818e-02   p_cons 6.409091e-04   p_joint 1.150000e-03

Joint ci ratio: 2.420399e-01	ci left: 1.001340e-03	ci right 1.281041e-03	k: 261	n:230000
Cons ci ratio: 3.254349e-01	ci left: 5.280309e-04	ci right 7.370613e-04	k: 144	n:230000
KS ci ratio: 6.902066e-02	ci left: 1.335284e-02	ci right 1.431165e-02	k: 3180	n:230000
OTUD7A   230000 perm   63 sec   (3632 perm/sec)   p_kst 1.382609e-02   p_cons 6.260870e-04   p_joint 1.134783e-03

Joint ci ratio: 2.379881e-01	ci left: 9.948621e-04	ci right 1.267416e-03	k: 270	n:240000
Cons ci ratio: 3.168115e-01	ci left: 5.366772e-04	ci right 7.423605e-04	k: 152	n:240000
KS ci ratio: 6.747787e-02	ci left: 1.339852e-02	ci right 1.433827e-02	k: 3327	n:240000
OTUD7A   240000 perm   67 sec   (3588 perm/sec)   p_kst 1.386250e-02   p_cons 6.333333e-04   p_joint 1.125000e-03

Joint ci ratio: 2.304545e-01	ci left: 1.022845e-03	ci right 1.292934e-03	k: 288	n:250000
Cons ci ratio: 3.127512e-01	ci left: 5.299460e-04	ci right 7.299265e-04	k: 156	n:250000
KS ci ratio: 6.617910e-02	ci left: 1.338176e-02	ci right 1.430157e-02	k: 3459	n:250000
OTUD7A   250000 perm   71 sec   (3546 perm/sec)   p_kst 1.383600e-02   p_cons 6.240000e-04   p_joint 1.152000e-03

Joint ci ratio: 2.304596e-01	ci left: 9.835029e-04	ci right 1.243209e-03	k: 288	n:260000
Cons ci ratio: 3.050742e-01	ci left: 5.379484e-04	ci right 7.349985e-04	k: 164	n:260000
KS ci ratio: 6.480635e-02	ci left: 1.342699e-02	ci right 1.433005e-02	k: 3607	n:260000
OTUD7A   260000 perm   74 sec   (3504 perm/sec)   p_kst 1.387308e-02   p_cons 6.307692e-04   p_joint 1.107692e-03

Joint ci ratio: 2.292761e-01	ci left: 9.575466e-04	ci right 1.208916e-03	k: 291	n:270000
Cons ci ratio: 3.005551e-01	ci left: 5.351360e-04	ci right 7.276977e-04	k: 169	n:270000
KS ci ratio: 6.362738e-02	ci left: 1.342166e-02	ci right 1.430733e-02	k: 3742	n:270000
OTUD7A   270000 perm   78 sec   (3463 perm/sec)   p_kst 1.385926e-02   p_cons 6.259259e-04   p_joint 1.077778e-03

Joint ci ratio: 2.250758e-01	ci left: 9.603989e-04	ci right 1.207258e-03	k: 302	n:280000
Cons ci ratio: 2.929004e-01	ci left: 5.457752e-04	ci right 7.362361e-04	k: 178	n:280000
KS ci ratio: 6.242892e-02	ci left: 1.345202e-02	ci right 1.432237e-02	k: 3887	n:280000
OTUD7A   280000 perm   82 sec   (3423 perm/sec)   p_kst 1.388214e-02   p_cons 6.357143e-04   p_joint 1.078571e-03

Joint ci ratio: 2.210982e-01	ci left: 9.630935e-04	ci right 1.205675e-03	k: 313	n:290000
Cons ci ratio: 2.920884e-01	ci left: 5.301500e-04	ci right 7.145502e-04	k: 179	n:290000
KS ci ratio: 6.135747e-02	ci left: 1.345326e-02	ci right 1.430822e-02	k: 4024	n:290000
OTUD7A   290000 perm   86 sec   (3382 perm/sec)   p_kst 1.387586e-02   p_cons 6.172414e-04   p_joint 1.079310e-03

Joint ci ratio: 2.190174e-01	ci left: 9.498873e-04	ci right 1.186588e-03	k: 319	n:300000
Cons ci ratio: 2.904811e-01	ci left: 5.186575e-04	ci right 6.978850e-04	k: 181	n:300000
KS ci ratio: 6.040562e-02	ci left: 1.342498e-02	ci right 1.426445e-02	k: 4152	n:300000
OTUD7A   300000 perm   90 sec   (3341 perm/sec)   p_kst 1.384000e-02   p_cons 6.033333e-04   p_joint 1.063333e-03

Joint ci ratio: 2.354243e-01	ci left: 7.884127e-04	ci right 1.001741e-03	k: 276	n:310000
Cons ci ratio: 2.850506e-01	ci left: 5.228779e-04	ci right 6.995782e-04	k: 188	n:310000
KS ci ratio: 5.947561e-02	ci left: 1.340816e-02	ci right 1.423322e-02	k: 4283	n:310000
OTUD7A   310000 perm   94 sec   (3304 perm/sec)   p_kst 1.381613e-02   p_cons 6.064516e-04   p_joint 8.903226e-04

Joint ci ratio: 2.308839e-01	ci left: 7.961425e-04	ci right 1.006815e-03	k: 287	n:320000
Cons ci ratio: 2.799138e-01	ci left: 5.268637e-04	ci right 7.011367e-04	k: 195	n:320000
KS ci ratio: 5.844648e-02	ci left: 1.345716e-02	ci right 1.427042e-02	k: 4435	n:320000
OTUD7A   320000 perm   98 sec   (3265 perm/sec)   p_kst 1.385938e-02   p_cons 6.093750e-04   p_joint 8.968750e-04

Joint ci ratio: 2.277428e-01	ci left: 7.948668e-04	ci right 1.001938e-03	k: 295	n:330000
Cons ci ratio: 2.771014e-01	ci left: 5.221727e-04	ci right 6.928560e-04	k: 199	n:330000
KS ci ratio: 5.750713e-02	ci left: 1.348539e-02	ci right 1.428682e-02	k: 4581	n:330000
OTUD7A   330000 perm   102 sec   (3228 perm/sec)   p_kst 1.388182e-02   p_cons 6.030303e-04   p_joint 8.939394e-04

Joint ci ratio: 2.258447e-01	ci left: 7.853584e-04	ci right 9.880099e-04	k: 300	n:340000
Cons ci ratio: 2.737017e-01	ci left: 5.205051e-04	ci right 6.881968e-04	k: 204	n:340000
KS ci ratio: 5.675181e-02	ci left: 1.344535e-02	ci right 1.423356e-02	k: 4704	n:340000
OTUD7A   340000 perm   107 sec   (3191 perm/sec)   p_kst 1.383529e-02   p_cons 6.000000e-04   p_joint 8.823529e-04

Joint ci ratio: 2.239932e-01	ci left: 7.764000e-04	ci right 9.748709e-04	k: 305	n:350000
Cons ci ratio: 2.704241e-01	ci left: 5.189448e-04	ci right 6.837919e-04	k: 209	n:350000
KS ci ratio: 5.611394e-02	ci left: 1.336540e-02	ci right 1.413983e-02	k: 4812	n:350000
OTUD7A   350000 perm   111 sec   (3155 perm/sec)   p_kst 1.374857e-02   p_cons 5.971429e-04   p_joint 8.714286e-04

Joint ci ratio: 2.211216e-01	ci left: 7.758168e-04	ci right 9.712502e-04	k: 313	n:360000
Cons ci ratio: 2.685141e-01	ci left: 5.122998e-04	ci right 6.736931e-04	k: 212	n:360000
KS ci ratio: 5.532634e-02	ci left: 1.337213e-02	ci right 1.413573e-02	k: 4950	n:360000
OTUD7A   360000 perm   115 sec   (3119 perm/sec)   p_kst 1.375000e-02   p_cons 5.888889e-04   p_joint 8.694444e-04

Joint ci ratio: 1.548173e-01	ci left: 1.595803e-03	ci right 1.866151e-03	k: 639	n:370000
Cons ci ratio: 2.666440e-01	ci left: 5.060179e-04	ci right 6.641362e-04	k: 215	n:370000
KS ci ratio: 5.459276e-02	ci left: 1.336790e-02	ci right 1.412082e-02	k: 5084	n:370000
OTUD7A   370000 perm   120 sec   (3085 perm/sec)   p_kst 1.374054e-02   p_cons 5.810811e-04   p_joint 1.727027e-03

Joint ci ratio: 1.569225e-01	ci left: 1.510811e-03	ci right 1.770568e-03	k: 622	n:380000
Cons ci ratio: 2.606766e-01	ci left: 5.172788e-04	ci right 6.747093e-04	k: 225	n:380000
KS ci ratio: 5.385622e-02	ci left: 1.337954e-02	ci right 1.412264e-02	k: 5224	n:380000
OTUD7A   380000 perm   125 sec   (3051 perm/sec)   p_kst 1.374737e-02   p_cons 5.921053e-04   p_joint 1.636842e-03

Joint ci ratio: 1.555563e-01	ci left: 1.499174e-03	ci right 1.754477e-03	k: 633	n:390000
Cons ci ratio: 2.550927e-01	ci left: 5.279995e-04	ci right 6.847032e-04	k: 235	n:390000
KS ci ratio: 5.315876e-02	ci left: 1.338559e-02	ci right 1.411910e-02	k: 5362	n:390000
OTUD7A   390000 perm   129 sec   (3018 perm/sec)   p_kst 1.374872e-02   p_cons 6.025641e-04   p_joint 1.623077e-03

Joint ci ratio: 1.543450e-01	ci left: 1.485724e-03	ci right 1.736584e-03	k: 643	n:400000
Cons ci ratio: 2.508754e-01	ci left: 5.335318e-04	ci right 6.888507e-04	k: 243	n:400000
KS ci ratio: 5.242976e-02	ci left: 1.342101e-02	ci right 1.414606e-02	k: 5512	n:400000
OTUD7A   400000 perm   134 sec   (2986 perm/sec)   p_kst 1.378000e-02   p_cons 6.075000e-04   p_joint 1.607500e-03

Joint ci ratio: 1.555625e-01	ci left: 1.426039e-03	ci right 1.668898e-03	k: 633	n:410000
Cons ci ratio: 2.473522e-01	ci left: 5.365263e-04	ci right 6.901861e-04	k: 250	n:410000
KS ci ratio: 5.182748e-02	ci left: 1.340420e-02	ci right 1.411977e-02	k: 5641	n:410000
OTUD7A   410000 perm   139 sec   (2955 perm/sec)   p_kst 1.375854e-02   p_cons 6.097561e-04   p_joint 1.543902e-03

Joint ci ratio: 1.554426e-01	ci left: 1.394372e-03	ci right 1.631638e-03	k: 634	n:420000
Cons ci ratio: 2.449250e-01	ci left: 5.349223e-04	ci right 6.863908e-04	k: 255	n:420000
KS ci ratio: 5.119155e-02	ci left: 1.341644e-02	ci right 1.412362e-02	k: 5782	n:420000
OTUD7A   420000 perm   144 sec   (2923 perm/sec)   p_kst 1.376667e-02   p_cons 6.071429e-04   p_joint 1.509524e-03

Joint ci ratio: 1.545943e-01	ci left: 1.377592e-03	ci right 1.610604e-03	k: 641	n:430000
Cons ci ratio: 2.421043e-01	ci left: 5.355844e-04	ci right 6.852315e-04	k: 261	n:430000
KS ci ratio: 5.056116e-02	ci left: 1.343735e-02	ci right 1.413666e-02	k: 5927	n:430000
OTUD7A   430000 perm   149 sec   (2892 perm/sec)   p_kst 1.378372e-02   p_cons 6.069767e-04   p_joint 1.490698e-03

Joint ci ratio: 1.536413e-01	ci left: 1.363763e-03	ci right 1.592883e-03	k: 649	n:440000
Cons ci ratio: 2.393789e-01	ci left: 5.362259e-04	ci right 6.841154e-04	k: 267	n:440000
KS ci ratio: 5.001617e-02	ci left: 1.342370e-02	ci right 1.411455e-02	k: 6057	n:440000
OTUD7A   440000 perm   154 sec   (2863 perm/sec)   p_kst 1.376591e-02   p_cons 6.068182e-04   p_joint 1.475000e-03

Joint ci ratio: 1.524737e-01	ci left: 1.354827e-03	ci right 1.580559e-03	k: 659	n:450000
Cons ci ratio: 2.376128e-01	ci left: 5.326674e-04	ci right 6.783320e-04	k: 271	n:450000
KS ci ratio: 4.952496e-02	ci left: 1.339093e-02	ci right 1.407313e-02	k: 6178	n:450000
OTUD7A   450000 perm   159 sec   (2834 perm/sec)   p_kst 1.372889e-02   p_cons 6.022222e-04   p_joint 1.464444e-03

Joint ci ratio: 1.506582e-01	ci left: 1.358838e-03	ci right 1.582299e-03	k: 675	n:460000
Cons ci ratio: 2.350347e-01	ci left: 5.333589e-04	ci right 6.774000e-04	k: 277	n:460000
KS ci ratio: 4.889864e-02	ci left: 1.344123e-02	ci right 1.411709e-02	k: 6337	n:460000
OTUD7A   460000 perm   164 sec   (2806 perm/sec)   p_kst 1.377609e-02   p_cons 6.021739e-04   p_joint 1.467391e-03

Joint ci ratio: 1.507723e-01	ci left: 1.327878e-03	ci right 1.546427e-03	k: 674	n:470000
Cons ci ratio: 2.325387e-01	ci left: 5.340292e-04	ci right 6.764995e-04	k: 283	n:470000
KS ci ratio: 4.836725e-02	ci left: 1.344950e-02	ci right 1.411822e-02	k: 6477	n:470000
OTUD7A   470000 perm   169 sec   (2778 perm/sec)   p_kst 1.378085e-02   p_cons 6.021277e-04   p_joint 1.434043e-03

Joint ci ratio: 1.532969e-01	ci left: 1.256120e-03	ci right 1.466639e-03	k: 652	n:480000
Cons ci ratio: 2.281608e-01	ci left: 5.444983e-04	ci right 6.866420e-04	k: 294	n:480000
KS ci ratio: 4.794104e-02	ci left: 1.340805e-02	ci right 1.406867e-02	k: 6593	n:480000
OTUD7A   480000 perm   174 sec   (2752 perm/sec)   p_kst 1.373542e-02   p_cons 6.125000e-04   p_joint 1.358333e-03

Joint ci ratio: 1.530645e-01	ci left: 1.234409e-03	ci right 1.440947e-03	k: 654	n:490000
Cons ci ratio: 2.251282e-01	ci left: 5.487859e-04	ci right 6.898806e-04	k: 302	n:490000
KS ci ratio: 4.746854e-02	ci left: 1.340059e-02	ci right 1.405416e-02	k: 6725	n:490000
OTUD7A   490000 perm   180 sec   (2727 perm/sec)   p_kst 1.372449e-02   p_cons 6.163265e-04   p_joint 1.334694e-03

Joint ci ratio: 1.515679e-01	ci left: 1.234730e-03	ci right 1.439118e-03	k: 667	n:500000
Cons ci ratio: 2.243899e-01	ci left: 5.415847e-04	ci right 6.803082e-04	k: 304	n:500000
KS ci ratio: 4.698197e-02	ci left: 1.340927e-02	ci right 1.405638e-02	k: 6865	n:500000
OTUD7A   500000 perm   185 sec   (2701 perm/sec)   p_kst 1.373000e-02   p_cons 6.080000e-04   p_joint 1.334000e-03

Joint ci ratio: 1.595402e-01	ci left: 1.088020e-03	ci right 1.278504e-03	k: 602	n:510000
Cons ci ratio: 2.225731e-01	ci left: 5.402205e-04	ci right 6.773207e-04	k: 309	n:510000
KS ci ratio: 4.651343e-02	ci left: 1.341571e-02	ci right 1.405650e-02	k: 7004	n:510000
OTUD7A   510000 perm   191 sec   (2677 perm/sec)   p_kst 1.373333e-02   p_cons 6.058824e-04   p_joint 1.180392e-03

Joint ci ratio: 1.578476e-01	ci left: 1.091104e-03	ci right 1.279909e-03	k: 615	n:520000
Cons ci ratio: 2.204500e-01	ci left: 5.407300e-04	ci right 6.764729e-04	k: 315	n:520000
KS ci ratio: 4.607825e-02	ci left: 1.341052e-02	ci right 1.404491e-02	k: 7137	n:520000
OTUD7A   520000 perm   196 sec   (2651 perm/sec)   p_kst 1.372500e-02   p_cons 6.057692e-04   p_joint 1.182692e-03

Joint ci ratio: 1.633864e-01	ci left: 9.962627e-04	ci right 1.175301e-03	k: 574	n:530000
Cons ci ratio: 2.177110e-01	ci left: 5.447938e-04	ci right 6.796304e-04	k: 323	n:530000
KS ci ratio: 4.569012e-02	ci left: 1.338504e-02	ci right 1.401275e-02	k: 7259	n:530000
OTUD7A   530000 perm   202 sec   (2628 perm/sec)   p_kst 1.369623e-02   p_cons 6.094340e-04   p_joint 1.083019e-03

Joint ci ratio: 1.621229e-01	ci left: 9.938011e-04	ci right 1.170881e-03	k: 583	n:540000
Cons ci ratio: 2.157228e-01	ci left: 5.452131e-04	ci right 6.787579e-04	k: 329	n:540000
KS ci ratio: 4.523404e-02	ci left: 1.340630e-02	ci right 1.402857e-02	k: 7406	n:540000
OTUD7A   540000 perm   207 sec   (2606 perm/sec)   p_kst 1.371481e-02   p_cons 6.092593e-04   p_joint 1.079630e-03

Joint ci ratio: 1.880916e-01	ci left: 7.148817e-04	ci right 8.650028e-04	k: 433	n:550000
Cons ci ratio: 2.137880e-01	ci left: 5.456225e-04	ci right 6.779118e-04	k: 335	n:550000
KS ci ratio: 4.481240e-02	ci left: 1.341423e-02	ci right 1.403091e-02	k: 7546	n:550000
OTUD7A   550000 perm   213 sec   (2584 perm/sec)   p_kst 1.372000e-02   p_cons 6.090909e-04   p_joint 7.872727e-04

Joint ci ratio: 1.861710e-01	ci left: 7.174346e-04	ci right 8.663796e-04	k: 442	n:560000
Cons ci ratio: 2.122151e-01	ci left: 5.443315e-04	ci right 6.752104e-04	k: 340	n:560000
KS ci ratio: 4.437016e-02	ci left: 1.344133e-02	ci right 1.405300e-02	k: 7697	n:560000
OTUD7A   560000 perm   219 sec   (2561 perm/sec)   p_kst 1.374464e-02   p_cons 6.071429e-04   p_joint 7.892857e-04

Joint ci ratio: 1.843080e-01	ci left: 7.199054e-04	ci right 8.677007e-04	k: 451	n:570000
Cons ci ratio: 2.112883e-01	ci left: 5.397657e-04	ci right 6.689067e-04	k: 343	n:570000
KS ci ratio: 4.400619e-02	ci left: 1.342759e-02	ci right 1.403351e-02	k: 7825	n:570000
OTUD7A   570000 perm   224 sec   (2539 perm/sec)   p_kst 1.372807e-02   p_cons 6.017544e-04   p_joint 7.912281e-04

Joint ci ratio: 1.805506e-01	ci left: 7.387567e-04	ci right 8.869923e-04	k: 470	n:580000
Cons ci ratio: 2.082819e-01	ci left: 5.467953e-04	ci right 6.755193e-04	k: 353	n:580000
KS ci ratio: 4.365937e-02	ci left: 1.340923e-02	ci right 1.400943e-02	k: 7950	n:580000
OTUD7A   580000 perm   230 sec   (2517 perm/sec)   p_kst 1.370690e-02   p_cons 6.086207e-04   p_joint 8.103448e-04

Joint ci ratio: 1.786636e-01	ci left: 7.424227e-04	ci right 8.896687e-04	k: 480	n:590000
Cons ci ratio: 2.054003e-01	ci left: 5.535991e-04	ci right 6.818954e-04	k: 363	n:590000
KS ci ratio: 4.333967e-02	ci left: 1.337978e-02	ci right 1.397416e-02	k: 8068	n:590000
OTUD7A   590000 perm   236 sec   (2496 perm/sec)   p_kst 1.367458e-02   p_cons 6.152542e-04   p_joint 8.135593e-04

Joint ci ratio: 1.768346e-01	ci left: 7.459743e-04	ci right 8.922482e-04	k: 490	n:600000
Cons ci ratio: 2.034532e-01	ci left: 5.554420e-04	ci right 6.827934e-04	k: 370	n:600000
KS ci ratio: 4.296309e-02	ci left: 1.339090e-02	ci right 1.398048e-02	k: 8210	n:600000
OTUD7A   600000 perm   242 sec   (2476 perm/sec)   p_kst 1.368333e-02   p_cons 6.166667e-04   p_joint 8.166667e-04

Joint ci ratio: 1.754114e-01	ci left: 7.462818e-04	ci right 8.913135e-04	k: 498	n:610000
Cons ci ratio: 1.997185e-01	ci left: 5.681292e-04	ci right 6.957073e-04	k: 384	n:610000
KS ci ratio: 4.261944e-02	ci left: 1.338707e-02	ci right 1.397166e-02	k: 8343	n:610000
OTUD7A   610000 perm   248 sec   (2456 perm/sec)   p_kst 1.367705e-02   p_cons 6.295082e-04   p_joint 8.163934e-04

Joint ci ratio: 1.733390e-01	ci left: 7.527554e-04	ci right 8.971359e-04	k: 510	n:620000
Cons ci ratio: 1.976750e-01	ci left: 5.712272e-04	ci right 6.980304e-04	k: 392	n:620000
KS ci ratio: 4.225108e-02	ci left: 1.340414e-02	ci right 1.398429e-02	k: 8489	n:620000
OTUD7A   620000 perm   255 sec   (2436 perm/sec)   p_kst 1.369194e-02   p_cons 6.322581e-04   p_joint 8.225806e-04

Joint ci ratio: 1.784826e-01	ci left: 6.967997e-04	ci right 8.348420e-04	k: 481	n:630000
Cons ci ratio: 1.961832e-01	ci left: 5.712144e-04	ci right 6.969433e-04	k: 398	n:630000
KS ci ratio: 4.190933e-02	ci left: 1.340969e-02	ci right 1.398527e-02	k: 8628	n:630000
OTUD7A   630000 perm   261 sec   (2416 perm/sec)   p_kst 1.369524e-02   p_cons 6.317460e-04   p_joint 7.634921e-04

Joint ci ratio: 1.770196e-01	ci left: 6.978560e-04	ci right 8.348531e-04	k: 489	n:640000
Cons ci ratio: 1.944845e-01	ci left: 5.726918e-04	ci right 6.975253e-04	k: 405	n:640000
KS ci ratio: 4.156373e-02	ci left: 1.342282e-02	ci right 1.399410e-02	k: 8772	n:640000
OTUD7A   640000 perm   267 sec   (2397 perm/sec)   p_kst 1.370625e-02   p_cons 6.328125e-04   p_joint 7.640625e-04

Joint ci ratio: 1.754158e-01	ci left: 7.003553e-04	ci right 8.364653e-04	k: 498	n:650000
Cons ci ratio: 1.930632e-01	ci left: 5.726641e-04	ci right 6.964722e-04	k: 411	n:650000
KS ci ratio: 4.121248e-02	ci left: 1.344470e-02	ci right 1.401196e-02	k: 8922	n:650000
OTUD7A   650000 perm   273 sec   (2378 perm/sec)   p_kst 1.372615e-02   p_cons 6.323077e-04   p_joint 7.661538e-04

Joint ci ratio: 1.339742e-01	ci left: 1.208651e-03	ci right 1.383652e-03	k: 854	n:660000
Cons ci ratio: 1.912154e-01	ci left: 5.755256e-04	ci right 6.986230e-04	k: 419	n:660000
KS ci ratio: 4.089055e-02	ci left: 1.345243e-02	ci right 1.401548e-02	k: 9063	n:660000
OTUD7A   660000 perm   280 sec   (2359 perm/sec)   p_kst 1.373182e-02   p_cons 6.348485e-04   p_joint 1.293939e-03

Joint ci ratio: 1.331978e-01	ci left: 1.205038e-03	ci right 1.378425e-03	k: 864	n:670000
Cons ci ratio: 1.887589e-01	ci left: 5.825729e-04	ci right 7.053934e-04	k: 430	n:670000
KS ci ratio: 4.059842e-02	ci left: 1.344518e-02	ci right 1.400381e-02	k: 9194	n:670000
OTUD7A   670000 perm   286 sec   (2341 perm/sec)   p_kst 1.372239e-02   p_cons 6.417910e-04   p_joint 1.289552e-03

Joint ci ratio: 1.327389e-01	ci left: 1.195847e-03	ci right 1.367271e-03	k: 870	n:680000
Cons ci ratio: 1.870309e-01	ci left: 5.852171e-04	ci right 7.073373e-04	k: 438	n:680000
KS ci ratio: 4.029275e-02	ci left: 1.345126e-02	ci right 1.400584e-02	k: 9334	n:680000
OTUD7A   680000 perm   293 sec   (2323 perm/sec)   p_kst 1.372647e-02   p_cons 6.441176e-04   p_joint 1.279412e-03

Joint ci ratio: 1.320588e-01	ci left: 1.191127e-03	ci right 1.360931e-03	k: 879	n:690000
Cons ci ratio: 1.855572e-01	ci left: 5.864076e-04	ci right 7.077035e-04	k: 445	n:690000
KS ci ratio: 3.999817e-02	ci left: 1.345431e-02	ci right 1.400486e-02	k: 9472	n:690000
OTUD7A   690000 perm   299 sec   (2305 perm/sec)   p_kst 1.372754e-02   p_cons 6.449275e-04   p_joint 1.273913e-03

Joint ci ratio: 1.316859e-01	ci left: 1.181017e-03	ci right 1.348868e-03	k: 884	n:700000
Cons ci ratio: 1.841179e-01	ci left: 5.875676e-04	ci right 7.080556e-04	k: 452	n:700000
KS ci ratio: 3.973931e-02	ci left: 1.343748e-02	ci right 1.398370e-02	k: 9596	n:700000
OTUD7A   700000 perm   306 sec   (2288 perm/sec)   p_kst 1.370857e-02   p_cons 6.457143e-04   p_joint 1.262857e-03

Joint ci ratio: 1.310218e-01	ci left: 1.176643e-03	ci right 1.342962e-03	k: 893	n:710000
Cons ci ratio: 1.831104e-01	ci left: 5.860106e-04	ci right 7.054487e-04	k: 457	n:710000
KS ci ratio: 3.948335e-02	ci left: 1.342253e-02	ci right 1.396455e-02	k: 9721	n:710000
OTUD7A   710000 perm   313 sec   (2271 perm/sec)   p_kst 1.369155e-02   p_cons 6.436620e-04   p_joint 1.257746e-03

Joint ci ratio: 1.300794e-01	ci left: 1.177766e-03	ci right 1.342955e-03	k: 906	n:720000
Cons ci ratio: 1.815316e-01	ci left: 5.884756e-04	ci right 7.072683e-04	k: 465	n:720000
KS ci ratio: 3.920202e-02	ci left: 1.342864e-02	ci right 1.396695e-02	k: 9861	n:720000
OTUD7A   720000 perm   320 sec   (2253 perm/sec)   p_kst 1.369583e-02   p_cons 6.458333e-04   p_joint 1.258333e-03

Joint ci ratio: 1.291570e-01	ci left: 1.178863e-03	ci right 1.342944e-03	k: 919	n:730000
Cons ci ratio: 1.796142e-01	ci left: 5.934939e-04	ci right 7.118967e-04	k: 475	n:730000
KS ci ratio: 3.891478e-02	ci left: 1.344273e-02	ci right 1.397758e-02	k: 10007	n:730000
OTUD7A   730000 perm   326 sec   (2237 perm/sec)   p_kst 1.370822e-02   p_cons 6.506849e-04   p_joint 1.258904e-03

Joint ci ratio: 1.278431e-01	ci left: 1.187784e-03	ci right 1.351296e-03	k: 938	n:740000
Cons ci ratio: 1.786784e-01	ci left: 5.919275e-04	ci right 7.093360e-04	k: 480	n:740000
KS ci ratio: 3.861063e-02	ci left: 1.347252e-02	ci right 1.400427e-02	k: 10165	n:740000
OTUD7A   740000 perm   333 sec   (2220 perm/sec)   p_kst 1.373649e-02   p_cons 6.486486e-04   p_joint 1.267568e-03

Joint ci ratio: 1.302986e-01	ci left: 1.126784e-03	ci right 1.285109e-03	k: 903	n:750000
Cons ci ratio: 1.779404e-01	ci left: 5.891303e-04	ci right 7.054494e-04	k: 484	n:750000
KS ci ratio: 3.838709e-02	ci left: 1.345002e-02	ci right 1.397774e-02	k: 10284	n:750000
OTUD7A   750000 perm   340 sec   (2204 perm/sec)   p_kst 1.371200e-02   p_cons 6.453333e-04   p_joint 1.204000e-03

Joint ci ratio: 1.293010e-01	ci left: 1.129781e-03	ci right 1.287218e-03	k: 917	n:760000
Cons ci ratio: 1.764905e-01	ci left: 5.914381e-04	ci right 7.071598e-04	k: 492	n:760000
KS ci ratio: 3.813581e-02	ci left: 1.345028e-02	ci right 1.397448e-02	k: 10420	n:760000
OTUD7A   760000 perm   347 sec   (2188 perm/sec)   p_kst 1.371053e-02   p_cons 6.473684e-04   p_joint 1.206579e-03

Joint ci ratio: 1.285333e-01	ci left: 1.128933e-03	ci right 1.285247e-03	k: 928	n:770000
Cons ci ratio: 1.759564e-01	ci left: 5.874812e-04	ci right 7.020438e-04	k: 495	n:770000
KS ci ratio: 3.790215e-02	ci left: 1.344154e-02	ci right 1.396212e-02	k: 10549	n:770000
OTUD7A   770000 perm   355 sec   (2172 perm/sec)   p_kst 1.370000e-02   p_cons 6.428571e-04   p_joint 1.205195e-03

Joint ci ratio: 1.279838e-01	ci left: 1.124387e-03	ci right 1.279355e-03	k: 936	n:780000
Cons ci ratio: 1.749017e-01	ci left: 5.873039e-04	ci right 7.010730e-04	k: 501	n:780000
KS ci ratio: 3.766915e-02	ci left: 1.343558e-02	ci right 1.395266e-02	k: 10680	n:780000
OTUD7A   780000 perm   362 sec   (2156 perm/sec)   p_kst 1.369231e-02   p_cons 6.423077e-04   p_joint 1.200000e-03

Joint ci ratio: 1.271721e-01	ci left: 1.124859e-03	ci right 1.278835e-03	k: 948	n:790000
Cons ci ratio: 1.736949e-01	ci left: 5.883440e-04	ci right 7.014456e-04	k: 508	n:790000
KS ci ratio: 3.742285e-02	ci left: 1.344231e-02	ci right 1.395620e-02	k: 10821	n:790000
OTUD7A   790000 perm   369 sec   (2138 perm/sec)   p_kst 1.369747e-02   p_cons 6.430380e-04   p_joint 1.200000e-03

Joint ci ratio: 1.270391e-01	ci left: 1.113219e-03	ci right 1.265430e-03	k: 950	n:800000
Cons ci ratio: 1.733551e-01	ci left: 5.833809e-04	ci right 6.952862e-04	k: 510	n:800000
KS ci ratio: 3.719164e-02	ci left: 1.344146e-02	ci right 1.395207e-02	k: 10956	n:800000
OTUD7A   800000 perm   377 sec   (2123 perm/sec)   p_kst 1.369500e-02   p_cons 6.375000e-04   p_joint 1.187500e-03

Joint ci ratio: 1.261795e-01	ci left: 1.115017e-03	ci right 1.266365e-03	k: 963	n:810000
Cons ci ratio: 1.723463e-01	ci left: 5.832657e-04	ci right 6.944299e-04	k: 516	n:810000
KS ci ratio: 3.693261e-02	ci left: 1.346388e-02	ci right 1.397170e-02	k: 11110	n:810000
OTUD7A   810000 perm   385 sec   (2106 perm/sec)   p_kst 1.371605e-02   p_cons 6.370370e-04   p_joint 1.188889e-03

Joint ci ratio: 1.255302e-01	ci left: 1.113230e-03	ci right 1.263500e-03	k: 973	n:820000
Cons ci ratio: 1.715190e-01	ci left: 5.819878e-04	ci right 6.923210e-04	k: 521	n:820000
KS ci ratio: 3.671693e-02	ci left: 1.345797e-02	ci right 1.396255e-02	k: 11241	n:820000
OTUD7A   820000 perm   392 sec   (2090 perm/sec)   p_kst 1.370854e-02   p_cons 6.353659e-04   p_joint 1.186585e-03

Joint ci ratio: 1.282628e-01	ci left: 1.051986e-03	ci right 1.197315e-03	k: 932	n:830000
Cons ci ratio: 1.708659e-01	ci left: 5.795886e-04	ci right 6.890055e-04	k: 525	n:830000
KS ci ratio: 3.651476e-02	ci left: 1.344505e-02	ci right 1.394631e-02	k: 11366	n:830000
OTUD7A   830000 perm   400 sec   (2075 perm/sec)   p_kst 1.369398e-02   p_cons 6.325301e-04   p_joint 1.122892e-03

Joint ci ratio: 1.277167e-01	ci left: 1.048681e-03	ci right 1.192890e-03	k: 940	n:840000
Cons ci ratio: 1.697401e-01	ci left: 5.806669e-04	ci right 6.894912e-04	k: 532	n:840000
KS ci ratio: 3.631589e-02	ci left: 1.343244e-02	ci right 1.393044e-02	k: 11491	n:840000
OTUD7A   840000 perm   408 sec   (2059 perm/sec)   p_kst 1.367976e-02   p_cons 6.333333e-04   p_joint 1.119048e-03

Joint ci ratio: 1.271104e-01	ci left: 1.046594e-03	ci right 1.189782e-03	k: 949	n:850000
Cons ci ratio: 1.689496e-01	ci left: 5.794686e-04	ci right 6.875110e-04	k: 537	n:850000
KS ci ratio: 3.608247e-02	ci left: 1.344812e-02	ci right 1.394344e-02	k: 11640	n:850000
OTUD7A   850000 perm   416 sec   (2044 perm/sec)   p_kst 1.369412e-02   p_cons 6.317647e-04   p_joint 1.116471e-03

Joint ci ratio: 1.266450e-01	ci left: 1.042305e-03	ci right 1.184345e-03	k: 956	n:860000
Cons ci ratio: 1.683253e-01	ci left: 5.771854e-04	ci right 6.843640e-04	k: 541	n:860000
KS ci ratio: 3.583192e-02	ci left: 1.347958e-02	ci right 1.397254e-02	k: 11803	n:860000
OTUD7A   860000 perm   424 sec   (2030 perm/sec)   p_kst 1.372442e-02   p_cons 6.290698e-04   p_joint 1.111628e-03

Joint ci ratio: 1.261192e-01	ci left: 1.039229e-03	ci right 1.180218e-03	k: 964	n:870000
Cons ci ratio: 1.677078e-01	ci left: 5.749554e-04	ci right 6.812887e-04	k: 545	n:870000
KS ci ratio: 3.560010e-02	ci left: 1.350008e-02	ci right 1.399052e-02	k: 11957	n:870000
OTUD7A   870000 perm   432 sec   (2015 perm/sec)   p_kst 1.374368e-02   p_cons 6.264368e-04   p_joint 1.108046e-03

Joint ci ratio: 1.256645e-01	ci left: 1.035124e-03	ci right 1.175012e-03	k: 971	n:880000
Cons ci ratio: 1.661924e-01	ci left: 5.793107e-04	ci right 6.853847e-04	k: 555	n:880000
KS ci ratio: 3.538308e-02	ci left: 1.351223e-02	ci right 1.400007e-02	k: 12104	n:880000
OTUD7A   880000 perm   440 sec   (2001 perm/sec)   p_kst 1.375455e-02   p_cons 6.306818e-04   p_joint 1.103409e-03

Joint ci ratio: 1.248324e-01	ci left: 1.037642e-03	ci right 1.176873e-03	k: 984	n:890000
Cons ci ratio: 1.651559e-01	ci left: 5.803407e-04	ci right 6.858747e-04	k: 562	n:890000
KS ci ratio: 3.517436e-02	ci left: 1.352078e-02	ci right 1.400599e-02	k: 12248	n:890000
OTUD7A   890000 perm   448 sec   (1987 perm/sec)   p_kst 1.376180e-02   p_cons 6.314607e-04   p_joint 1.105618e-03

Joint ci ratio: 1.280625e-01	ci left: 9.733884e-04	ci right 1.107634e-03	k: 935	n:900000
Cons ci ratio: 1.639948e-01	ci left: 5.824153e-04	ci right 6.875084e-04	k: 570	n:900000
KS ci ratio: 3.496928e-02	ci left: 1.352915e-02	ci right 1.401177e-02	k: 12392	n:900000
OTUD7A   900000 perm   456 sec   (1973 perm/sec)   p_kst 1.376889e-02   p_cons 6.333333e-04   p_joint 1.038889e-03

Joint ci ratio: 1.274513e-01	ci left: 9.722659e-04	ci right 1.105668e-03	k: 944	n:910000
Cons ci ratio: 1.632815e-01	ci left: 5.812846e-04	ci right 6.856728e-04	k: 575	n:910000
KS ci ratio: 3.477760e-02	ci left: 1.352971e-02	ci right 1.400965e-02	k: 12529	n:910000
OTUD7A   910000 perm   464 sec   (1960 perm/sec)   p_kst 1.376813e-02   p_cons 6.318681e-04   p_joint 1.037363e-03

Joint ci ratio: 1.267159e-01	ci left: 9.732742e-04	ci right 1.105986e-03	k: 955	n:920000
Cons ci ratio: 1.622983e-01	ci left: 5.822651e-04	ci right 6.861382e-04	k: 582	n:920000
KS ci ratio: 3.460011e-02	ci left: 1.352165e-02	ci right 1.399881e-02	k: 12658	n:920000
OTUD7A   920000 perm   473 sec   (1946 perm/sec)   p_kst 1.375870e-02   p_cons 6.326087e-04   p_joint 1.038043e-03

Joint ci ratio: 1.259931e-01	ci left: 9.742630e-04	ci right 1.106296e-03	k: 966	n:930000
Cons ci ratio: 1.614695e-01	ci left: 5.821944e-04	ci right 6.854731e-04	k: 588	n:930000
KS ci ratio: 3.440486e-02	ci left: 1.352976e-02	ci right 1.400446e-02	k: 12802	n:930000
OTUD7A   930000 perm   481 sec   (1933 perm/sec)   p_kst 1.376559e-02   p_cons 6.322581e-04   p_joint 1.038710e-03

Joint ci ratio: 1.250906e-01	ci left: 9.783245e-04	ci right 1.109888e-03	k: 980	n:940000
Cons ci ratio: 1.609242e-01	ci left: 5.800845e-04	ci right 6.826077e-04	k: 592	n:940000
KS ci ratio: 3.421020e-02	ci left: 1.353982e-02	ci right 1.401212e-02	k: 12948	n:940000
OTUD7A   940000 perm   490 sec   (1920 perm/sec)   p_kst 1.377447e-02   p_cons 6.297872e-04   p_joint 1.042553e-03

Joint ci ratio: 1.240202e-01	ci left: 9.853638e-04	ci right 1.116656e-03	k: 997	n:950000
Cons ci ratio: 1.599827e-01	ci left: 5.810509e-04	ci right 6.830864e-04	k: 599	n:950000
KS ci ratio: 3.404122e-02	ci left: 1.353192e-02	ci right 1.400158e-02	k: 13077	n:950000
OTUD7A   950000 perm   498 sec   (1907 perm/sec)   p_kst 1.376526e-02   p_cons 6.305263e-04   p_joint 1.049474e-03

Joint ci ratio: 1.234035e-01	ci left: 9.851939e-04	ci right 1.115763e-03	k: 1007	n:960000
Cons ci ratio: 1.594523e-01	ci left: 5.789984e-04	ci right 6.803040e-04	k: 603	n:960000
KS ci ratio: 3.387212e-02	ci left: 1.352626e-02	ci right 1.399334e-02	k: 13208	n:960000
OTUD7A   960000 perm   507 sec   (1895 perm/sec)   p_kst 1.375833e-02   p_cons 6.281250e-04   p_joint 1.048958e-03

Joint ci ratio: 1.349532e-01	ci left: 8.104150e-04	ci right 9.286807e-04	k: 842	n:970000
Cons ci ratio: 1.589271e-01	ci left: 5.769887e-04	ci right 6.775785e-04	k: 607	n:970000
KS ci ratio: 3.369015e-02	ci left: 1.353300e-02	ci right 1.399775e-02	k: 13351	n:970000
OTUD7A   970000 perm   515 sec   (1883 perm/sec)   p_kst 1.376392e-02   p_cons 6.257732e-04   p_joint 8.680412e-04

Joint ci ratio: 1.338460e-01	ci left: 8.159510e-04	ci right 9.339700e-04	k: 856	n:980000
Cons ci ratio: 1.581487e-01	ci left: 5.769806e-04	ci right 6.770296e-04	k: 613	n:980000
KS ci ratio: 3.350605e-02	ci left: 1.354365e-02	ci right 1.400617e-02	k: 13498	n:980000
OTUD7A   980000 perm   524 sec   (1872 perm/sec)   p_kst 1.377347e-02   p_cons 6.255102e-04   p_joint 8.734694e-04

Joint ci ratio: 1.333801e-01	ci left: 8.135670e-04	ci right 9.307991e-04	k: 862	n:990000
Cons ci ratio: 1.576362e-01	ci left: 5.750332e-04	ci right 6.743909e-04	k: 617	n:990000
KS ci ratio: 3.333236e-02	ci left: 1.354808e-02	ci right 1.400831e-02	k: 13639	n:990000
OTUD7A   990000 perm   532 sec   (1860 perm/sec)   p_kst 1.377677e-02   p_cons 6.232323e-04   p_joint 8.707071e-04

Joint ci ratio: 1.324621e-01	ci left: 8.170324e-04	ci right 9.338898e-04	k: 874	n:1000000
Cons ci ratio: 1.568765e-01	ci left: 5.750468e-04	ci right 6.738829e-04	k: 623	n:1000000
KS ci ratio: 3.317111e-02	ci left: 1.354449e-02	ci right 1.400233e-02	k: 13772	n:1000000
OTUD7A   1000000 perm   541 sec   (1849 perm/sec)   p_kst 1.377200e-02   p_cons 6.230000e-04   p_joint 8.740000e-04

Joint ci ratio: 1.087769e-01	ci left: 1.214292e-03	ci right 1.354930e-03	k: 1296	n:1010000
Cons ci ratio: 1.763259e-01	ci left: 4.459859e-04	ci right 5.331579e-04	k: 493	n:1010000
KS ci ratio: 3.299414e-02	ci left: 1.355571e-02	ci right 1.401144e-02	k: 13920	n:1010000
OTUD7A   1010000 perm   550 sec   (1837 perm/sec)   p_kst 1.378218e-02   p_cons 4.881188e-04   p_joint 1.283168e-03

Joint ci ratio: 1.076207e-01	ci left: 1.229096e-03	ci right 1.369839e-03	k: 1324	n:1020000
Cons ci ratio: 1.756164e-01	ci left: 4.453623e-04	ci right 5.320250e-04	k: 497	n:1020000
KS ci ratio: 3.278927e-02	ci left: 1.359200e-02	ci right 1.404606e-02	k: 14094	n:1020000
OTUD7A   1020000 perm   558 sec   (1826 perm/sec)   p_kst 1.381765e-02   p_cons 4.872549e-04   p_joint 1.298039e-03

Joint ci ratio: 1.071768e-01	ci left: 1.227555e-03	ci right 1.367506e-03	k: 1335	n:1030000
Cons ci ratio: 1.752651e-01	ci left: 4.428949e-04	ci right 5.288867e-04	k: 499	n:1030000
KS ci ratio: 3.263341e-02	ci left: 1.359003e-02	ci right 1.404183e-02	k: 14229	n:1030000
OTUD7A   1030000 perm   567 sec   (1815 perm/sec)   p_kst 1.381456e-02   p_cons 4.844660e-04   p_joint 1.296117e-03

Joint ci ratio: 1.068178e-01	ci left: 1.224174e-03	ci right 1.363243e-03	k: 1344	n:1040000
Cons ci ratio: 1.747418e-01	ci left: 4.413945e-04	ci right 5.268122e-04	k: 502	n:1040000
KS ci ratio: 3.246029e-02	ci left: 1.360433e-02	ci right 1.405416e-02	k: 14381	n:1040000
OTUD7A   1040000 perm   576 sec   (1805 perm/sec)   p_kst 1.382788e-02   p_cons 4.826923e-04   p_joint 1.292308e-03

Joint ci ratio: 9.539116e-02	ci left: 1.529102e-03	ci right 1.683192e-03	k: 1685	n:1050000
Cons ci ratio: 1.743957e-01	ci left: 4.390122e-04	ci right 5.237829e-04	k: 504	n:1050000
KS ci ratio: 3.230454e-02	ci left: 1.360607e-02	ci right 1.405376e-02	k: 14520	n:1050000
OTUD7A   1050000 perm   585 sec   (1794 perm/sec)   p_kst 1.382857e-02   p_cons 4.800000e-04   p_joint 1.604762e-03

Joint ci ratio: 9.510979e-02	ci left: 1.523886e-03	ci right 1.676972e-03	k: 1695	n:1060000
Cons ci ratio: 1.738801e-01	ci left: 4.375774e-04	ci right 5.217950e-04	k: 507	n:1060000
KS ci ratio: 3.216214e-02	ci left: 1.359843e-02	ci right 1.404386e-02	k: 14649	n:1060000
OTUD7A   1060000 perm   595 sec   (1783 perm/sec)   p_kst 1.381981e-02   p_cons 4.783019e-04   p_joint 1.599057e-03

Joint ci ratio: 9.460897e-02	ci left: 1.526067e-03	ci right 1.678520e-03	k: 1713	n:1070000
Cons ci ratio: 1.730307e-01	ci left: 4.379579e-04	ci right 5.217940e-04	k: 512	n:1070000
KS ci ratio: 3.202491e-02	ci left: 1.358815e-02	ci right 1.403131e-02	k: 14775	n:1070000
OTUD7A   1070000 perm   604 sec   (1772 perm/sec)   p_kst 1.380841e-02   p_cons 4.785047e-04   p_joint 1.600935e-03

Joint ci ratio: 9.400732e-02	ci left: 1.531827e-03	ci right 1.683829e-03	k: 1735	n:1080000
Cons ci ratio: 1.718619e-01	ci left: 4.401045e-04	ci right 5.237235e-04	k: 519	n:1080000
KS ci ratio: 3.188074e-02	ci left: 1.358542e-02	ci right 1.402646e-02	k: 14909	n:1080000
OTUD7A   1080000 perm   613 sec   (1761 perm/sec)   p_kst 1.380463e-02   p_cons 4.805556e-04   p_joint 1.606481e-03

Joint ci ratio: 9.783619e-02	ci left: 1.398676e-03	ci right 1.543443e-03	k: 1602	n:1090000
Cons ci ratio: 1.712047e-01	ci left: 4.395791e-04	ci right 5.227458e-04	k: 523	n:1090000
KS ci ratio: 3.058115e-02	ci left: 1.462331e-02	ci right 1.507835e-02	k: 16186	n:1090000
OTUD7A   1090000 perm   623 sec   (1750 perm/sec)   p_kst 1.484954e-02   p_cons 4.798165e-04   p_joint 1.469725e-03

Joint ci ratio: 9.744195e-02	ci left: 1.397491e-03	ci right 1.541518e-03	k: 1615	n:1100000
Cons ci ratio: 1.702328e-01	ci left: 4.408044e-04	ci right 5.236809e-04	k: 529	n:1100000
KS ci ratio: 3.044041e-02	ci left: 1.462570e-02	ci right 1.507868e-02	k: 16336	n:1100000
OTUD7A   1100000 perm   632 sec   (1739 perm/sec)   p_kst 1.485091e-02   p_cons 4.809091e-04   p_joint 1.468182e-03

Joint ci ratio: 8.761872e-02	ci left: 1.721115e-03	ci right 1.879700e-03	k: 1997	n:1110000
Cons ci ratio: 1.691195e-01	ci left: 4.428717e-04	ci right 5.255369e-04	k: 536	n:1110000
KS ci ratio: 3.031000e-02	ci left: 1.461999e-02	ci right 1.507083e-02	k: 16477	n:1110000
OTUD7A   1110000 perm   642 sec   (1729 perm/sec)   p_kst 1.484414e-02   p_cons 4.828829e-04   p_joint 1.799099e-03

Joint ci ratio: 8.735702e-02	ci left: 1.716228e-03	ci right 1.873866e-03	k: 2009	n:1120000
Cons ci ratio: 1.688056e-01	ci left: 4.406277e-04	ci right 5.227058e-04	k: 538	n:1120000
KS ci ratio: 3.017295e-02	ci left: 1.462237e-02	ci right 1.507121e-02	k: 16627	n:1120000
OTUD7A   1120000 perm   652 sec   (1719 perm/sec)   p_kst 1.484554e-02   p_cons 4.803571e-04   p_joint 1.793750e-03

Joint ci ratio: 8.493669e-02	ci left: 1.801487e-03	ci right 1.962145e-03	k: 2125	n:1130000
Cons ci ratio: 1.678738e-01	ci left: 4.418144e-04	ci right 5.236133e-04	k: 544	n:1130000
KS ci ratio: 3.004503e-02	ci left: 1.461769e-02	ci right 1.506445e-02	k: 16769	n:1130000
OTUD7A   1130000 perm   661 sec   (1709 perm/sec)   p_kst 1.483982e-02   p_cons 4.814159e-04   p_joint 1.880531e-03

Joint ci ratio: 8.469824e-02	ci left: 1.795988e-03	ci right 1.955683e-03	k: 2137	n:1140000
Cons ci ratio: 1.668058e-01	ci left: 4.438220e-04	ci right 5.254174e-04	k: 551	n:1140000
KS ci ratio: 2.991422e-02	ci left: 1.461745e-02	ci right 1.506222e-02	k: 16916	n:1140000
OTUD7A   1140000 perm   671 sec   (1699 perm/sec)   p_kst 1.483860e-02   p_cons 4.833333e-04   p_joint 1.874561e-03

Joint ci ratio: 8.450118e-02	ci left: 1.788882e-03	ci right 1.947557e-03	k: 2147	n:1150000
Cons ci ratio: 1.662048e-01	ci left: 4.432960e-04	ci right 5.244716e-04	k: 555	n:1150000
KS ci ratio: 2.979930e-02	ci left: 1.460340e-02	ci right 1.504601e-02	k: 17047	n:1150000
OTUD7A   1150000 perm   681 sec   (1689 perm/sec)   p_kst 1.482348e-02   p_cons 4.826087e-04   p_joint 1.866957e-03

Joint ci ratio: 8.467978e-02	ci left: 1.765865e-03	ci right 1.922846e-03	k: 2138	n:1160000
Cons ci ratio: 1.648754e-01	ci left: 4.469118e-04	ci right 5.280300e-04	k: 564	n:1160000
KS ci ratio: 2.965678e-02	ci left: 1.461784e-02	ci right 1.505873e-02	k: 17211	n:1160000
OTUD7A   1160000 perm   690 sec   (1680 perm/sec)   p_kst 1.483707e-02   p_cons 4.862069e-04   p_joint 1.843103e-03

Joint ci ratio: 8.430615e-02	ci left: 1.766668e-03	ci right 1.922994e-03	k: 2157	n:1170000
Cons ci ratio: 1.637202e-01	ci left: 4.496485e-04	ci right 5.306354e-04	k: 572	n:1170000
KS ci ratio: 2.951544e-02	ci left: 1.463288e-02	ci right 1.507209e-02	k: 17376	n:1170000
OTUD7A   1170000 perm   700 sec   (1671 perm/sec)   p_kst 1.485128e-02   p_cons 4.888889e-04   p_joint 1.843590e-03

Joint ci ratio: 8.393743e-02	ci left: 1.767460e-03	ci right 1.923137e-03	k: 2176	n:1180000
Cons ci ratio: 1.632934e-01	ci left: 4.482763e-04	ci right 5.287848e-04	k: 575	n:1180000
KS ci ratio: 2.938034e-02	ci left: 1.464347e-02	ci right 1.508095e-02	k: 17536	n:1180000
OTUD7A   1180000 perm   710 sec   (1662 perm/sec)   p_kst 1.486102e-02   p_cons 4.872881e-04   p_joint 1.844068e-03

Joint ci ratio: 8.432704e-02	ci left: 1.736153e-03	ci right 1.889818e-03	k: 2156	n:1190000
Cons ci ratio: 1.621709e-01	ci left: 4.509582e-04	ci right 5.313374e-04	k: 583	n:1190000
KS ci ratio: 2.926723e-02	ci left: 1.463386e-02	ci right 1.506934e-02	k: 17672	n:1190000
OTUD7A   1190000 perm   720 sec   (1653 perm/sec)   p_kst 1.485042e-02   p_cons 4.899160e-04   p_joint 1.811765e-03

Joint ci ratio: 8.407425e-02	ci left: 1.732290e-03	ci right 1.885131e-03	k: 2169	n:1200000
Cons ci ratio: 1.616184e-01	ci left: 4.503985e-04	ci right 5.303779e-04	k: 587	n:1200000
KS ci ratio: 2.914712e-02	ci left: 1.463269e-02	ci right 1.506632e-02	k: 17818	n:1200000
OTUD7A   1200000 perm   730 sec   (1644 perm/sec)   p_kst 1.484833e-02   p_cons 4.891667e-04   p_joint 1.807500e-03

Joint ci ratio: 8.361294e-02	ci left: 1.737392e-03	ci right 1.889802e-03	k: 2193	n:1210000
Cons ci ratio: 1.610715e-01	ci left: 4.498485e-04	ci right 5.294337e-04	k: 591	n:1210000
KS ci ratio: 2.900062e-02	ci left: 1.465944e-02	ci right 1.509164e-02	k: 17998	n:1210000
OTUD7A   1210000 perm   740 sec   (1635 perm/sec)   p_kst 1.487438e-02   p_cons 4.884298e-04   p_joint 1.812397e-03

Joint ci ratio: 8.357541e-02	ci left: 1.724756e-03	ci right 1.875985e-03	k: 2195	n:1220000
Cons ci ratio: 1.605302e-01	ci left: 4.493080e-04	ci right 5.285046e-04	k: 595	n:1220000
KS ci ratio: 2.887809e-02	ci left: 1.466379e-02	ci right 1.509426e-02	k: 18151	n:1220000
OTUD7A   1220000 perm   750 sec   (1626 perm/sec)   p_kst 1.487787e-02   p_cons 4.877049e-04   p_joint 1.799180e-03

Joint ci ratio: 8.518436e-02	ci left: 1.645471e-03	ci right 1.792664e-03	k: 2113	n:1230000
Cons ci ratio: 1.601278e-01	ci left: 4.479962e-04	ci right 5.267447e-04	k: 598	n:1230000
KS ci ratio: 2.876508e-02	ci left: 1.465999e-02	ci right 1.508864e-02	k: 18294	n:1230000
OTUD7A   1230000 perm   761 sec   (1617 perm/sec)   p_kst 1.487317e-02   p_cons 4.861789e-04   p_joint 1.717886e-03

Joint ci ratio: 8.486386e-02	ci left: 1.644830e-03	ci right 1.791384e-03	k: 2129	n:1240000
Cons ci ratio: 1.595959e-01	ci left: 4.474801e-04	ci right 5.258515e-04	k: 602	n:1240000
KS ci ratio: 2.863998e-02	ci left: 1.466987e-02	ci right 1.509691e-02	k: 18454	n:1240000
OTUD7A   1240000 perm   771 sec   (1608 perm/sec)   p_kst 1.488226e-02   p_cons 4.854839e-04   p_joint 1.716935e-03

Joint ci ratio: 8.442880e-02	ci left: 1.648899e-03	ci right 1.795026e-03	k: 2151	n:1250000
Cons ci ratio: 1.592004e-01	ci left: 4.462045e-04	ci right 5.241404e-04	k: 605	n:1250000
KS ci ratio: 2.851962e-02	ci left: 1.467642e-02	ci right 1.510183e-02	k: 18610	n:1250000
OTUD7A   1250000 perm   781 sec   (1600 perm/sec)   p_kst 1.488800e-02   p_cons 4.840000e-04   p_joint 1.720800e-03

Joint ci ratio: 8.413615e-02	ci left: 1.647466e-03	ci right 1.792935e-03	k: 2166	n:1260000
Cons ci ratio: 1.582887e-01	ci left: 4.479981e-04	ci right 5.257566e-04	k: 612	n:1260000
KS ci ratio: 2.841921e-02	ci left: 1.466396e-02	ci right 1.508748e-02	k: 18742	n:1260000
OTUD7A   1260000 perm   792 sec   (1591 perm/sec)   p_kst 1.487460e-02   p_cons 4.857143e-04   p_joint 1.719048e-03

Joint ci ratio: 8.388505e-02	ci left: 1.644515e-03	ci right 1.789269e-03	k: 2179	n:1270000
Cons ci ratio: 1.581600e-01	ci left: 4.452267e-04	ci right 5.224354e-04	k: 613	n:1270000
KS ci ratio: 2.832518e-02	ci left: 1.464622e-02	ci right 1.506781e-02	k: 18867	n:1270000
OTUD7A   1270000 perm   802 sec   (1583 perm/sec)   p_kst 1.485591e-02   p_cons 4.826772e-04   p_joint 1.715748e-03

Joint ci ratio: 8.357894e-02	ci left: 1.643905e-03	ci right 1.788052e-03	k: 2195	n:1280000
Cons ci ratio: 1.575199e-01	ci left: 4.455003e-04	ci right 5.224142e-04	k: 618	n:1280000
KS ci ratio: 2.822379e-02	ci left: 1.463729e-02	ci right 1.505709e-02	k: 19003	n:1280000
OTUD7A   1280000 perm   813 sec   (1575 perm/sec)   p_kst 1.484609e-02   p_cons 4.828125e-04   p_joint 1.714844e-03

Joint ci ratio: 8.371325e-02	ci left: 1.625848e-03	ci right 1.768652e-03	k: 2188	n:1290000
Cons ci ratio: 1.561383e-01	ci left: 4.502394e-04	ci right 5.272259e-04	k: 629	n:1290000
KS ci ratio: 2.812273e-02	ci left: 1.462928e-02	ci right 1.504732e-02	k: 19140	n:1290000
OTUD7A   1290000 perm   823 sec   (1567 perm/sec)   p_kst 1.483721e-02   p_cons 4.875969e-04   p_joint 1.696124e-03

Joint ci ratio: 8.331444e-02	ci left: 1.629158e-03	ci right 1.771538e-03	k: 2209	n:1300000
Cons ci ratio: 1.557680e-01	ci left: 4.489937e-04	ci right 5.255680e-04	k: 632	n:1300000
KS ci ratio: 2.800579e-02	ci left: 1.463896e-02	ci right 1.505551e-02	k: 19300	n:1300000
OTUD7A   1300000 perm   834 sec   (1559 perm/sec)   p_kst 1.484615e-02   p_cons 4.861538e-04   p_joint 1.699231e-03

Joint ci ratio: 8.288407e-02	ci left: 1.633915e-03	ci right 1.775937e-03	k: 2232	n:1310000
Cons ci ratio: 1.550349e-01	ci left: 4.499683e-04	ci right 5.263142e-04	k: 638	n:1310000
KS ci ratio: 2.789540e-02	ci left: 1.464319e-02	ci right 1.505820e-02	k: 19453	n:1310000
OTUD7A   1310000 perm   845 sec   (1550 perm/sec)   p_kst 1.484962e-02   p_cons 4.870229e-04   p_joint 1.703817e-03

Joint ci ratio: 8.257036e-02	ci left: 1.634149e-03	ci right 1.775628e-03	k: 2249	n:1320000
Cons ci ratio: 1.549140e-01	ci left: 4.472876e-04	ci right 5.231139e-04	k: 639	n:1320000
KS ci ratio: 2.778486e-02	ci left: 1.464886e-02	ci right 1.506236e-02	k: 19608	n:1320000
OTUD7A   1320000 perm   856 sec   (1542 perm/sec)   p_kst 1.485455e-02   p_cons 4.840909e-04   p_joint 1.703788e-03

Joint ci ratio: 7.248803e-02	ci left: 2.114439e-03	ci right 2.274207e-03	k: 2917	n:1330000
Cons ci ratio: 1.541928e-01	ci left: 4.482614e-04	ci right 5.238663e-04	k: 645	n:1330000
KS ci ratio: 2.851394e-02	ci left: 1.381146e-02	ci right 1.421171e-02	k: 18634	n:1330000
OTUD7A   1330000 perm   867 sec   (1534 perm/sec)   p_kst 1.401053e-02   p_cons 4.849624e-04   p_joint 2.193233e-03

Joint ci ratio: 7.275146e-02	ci left: 2.083271e-03	ci right 2.241281e-03	k: 2896	n:1340000
Cons ci ratio: 1.533640e-01	ci left: 4.499390e-04	ci right 5.253816e-04	k: 652	n:1340000
KS ci ratio: 2.838444e-02	ci left: 1.383435e-02	ci right 1.423342e-02	k: 18804	n:1340000
OTUD7A   1340000 perm   878 sec   (1526 perm/sec)   p_kst 1.403284e-02   p_cons 4.865672e-04   p_joint 2.161194e-03

Joint ci ratio: 7.255153e-02	ci left: 2.079476e-03	ci right 2.236746e-03	k: 2912	n:1350000
Cons ci ratio: 1.526642e-01	ci left: 4.508805e-04	ci right 5.261043e-04	k: 658	n:1350000
KS ci ratio: 2.827861e-02	ci left: 1.383558e-02	ci right 1.423317e-02	k: 18945	n:1350000
OTUD7A   1350000 perm   889 sec   (1518 perm/sec)   p_kst 1.403333e-02   p_cons 4.874074e-04   p_joint 2.157037e-03

Joint ci ratio: 7.319706e-02	ci left: 2.027367e-03	ci right 2.182118e-03	k: 2861	n:1360000
Cons ci ratio: 1.519739e-01	ci left: 4.518088e-04	ci right 5.268157e-04	k: 664	n:1360000
KS ci ratio: 2.817771e-02	ci left: 1.383314e-02	ci right 1.422922e-02	k: 19081	n:1360000
OTUD7A   1360000 perm   900 sec   (1511 perm/sec)   p_kst 1.403015e-02   p_cons 4.882353e-04   p_joint 2.103676e-03

Joint ci ratio: 7.339060e-02	ci left: 2.001820e-03	ci right 2.155042e-03	k: 2846	n:1370000
Cons ci ratio: 1.518599e-01	ci left: 4.492130e-04	ci right 5.237280e-04	k: 665	n:1370000
KS ci ratio: 2.805937e-02	ci left: 1.384887e-02	ci right 1.424370e-02	k: 19242	n:1370000
OTUD7A   1370000 perm   911 sec   (1503 perm/sec)   p_kst 1.404526e-02   p_cons 4.854015e-04   p_joint 2.077372e-03

Joint ci ratio: 9.383455e-02	ci left: 1.203765e-03	ci right 1.322982e-03	k: 1742	n:1380000
Cons ci ratio: 1.742332e-01	ci left: 3.347225e-04	ci right 3.992888e-04	k: 505	n:1380000
KS ci ratio: 2.796224e-02	ci left: 1.384493e-02	ci right 1.423827e-02	k: 19376	n:1380000
OTUD7A   1380000 perm   923 sec   (1495 perm/sec)   p_kst 1.404058e-02   p_cons 3.659420e-04   p_joint 1.262319e-03

Joint ci ratio: 9.407848e-02	ci left: 1.188782e-03	ci right 1.306837e-03	k: 1733	n:1390000
Cons ci ratio: 1.740615e-01	ci left: 3.330024e-04	ci right 3.971670e-04	k: 506	n:1390000
KS ci ratio: 2.785743e-02	ci left: 1.384963e-02	ci right 1.424160e-02	k: 19522	n:1390000
OTUD7A   1390000 perm   935 sec   (1487 perm/sec)   p_kst 1.404460e-02   p_cons 3.640288e-04   p_joint 1.246763e-03

Joint ci ratio: 9.362053e-02	ci left: 1.192148e-03	ci right 1.309930e-03	k: 1750	n:1400000
Cons ci ratio: 1.730405e-01	ci left: 3.347234e-04	ci right 3.988017e-04	k: 512	n:1400000
KS ci ratio: 2.774807e-02	ci left: 1.385994e-02	ci right 1.425064e-02	k: 19676	n:1400000
OTUD7A   1400000 perm   946 sec   (1480 perm/sec)   p_kst 1.405429e-02   p_cons 3.657143e-04   p_joint 1.250000e-03

Joint ci ratio: 9.338097e-02	ci left: 1.189927e-03	ci right 1.307172e-03	k: 1759	n:1410000
Cons ci ratio: 1.720372e-01	ci left: 3.364211e-04	ci right 4.004122e-04	k: 518	n:1410000
KS ci ratio: 2.764847e-02	ci left: 1.386166e-02	ci right 1.425098e-02	k: 19818	n:1410000
OTUD7A   1410000 perm   958 sec   (1472 perm/sec)   p_kst 1.405532e-02   p_cons 3.673759e-04   p_joint 1.247518e-03

Joint ci ratio: 9.316960e-02	ci left: 1.187050e-03	ci right 1.303732e-03	k: 1767	n:1420000
Cons ci ratio: 1.712143e-01	ci left: 3.374218e-04	ci right 4.012646e-04	k: 523	n:1420000
KS ci ratio: 2.754574e-02	ci left: 1.386755e-02	ci right 1.425557e-02	k: 19966	n:1420000
OTUD7A   1420000 perm   970 sec   (1464 perm/sec)   p_kst 1.406056e-02   p_cons 3.683099e-04   p_joint 1.244366e-03

Joint ci ratio: 9.457286e-02	ci left: 1.143237e-03	ci right 1.257400e-03	k: 1715	n:1430000
Cons ci ratio: 1.707264e-01	ci left: 3.370703e-04	ci right 4.006462e-04	k: 526	n:1430000
KS ci ratio: 2.744276e-02	ci left: 1.387475e-02	ci right 1.426149e-02	k: 20116	n:1430000
OTUD7A   1430000 perm   981 sec   (1457 perm/sec)   p_kst 1.406713e-02   p_cons 3.678322e-04   p_joint 1.199301e-03

Joint ci ratio: 9.432593e-02	ci left: 1.141401e-03	ci right 1.255065e-03	k: 1724	n:1440000
Cons ci ratio: 1.699221e-01	ci left: 3.380538e-04	ci right 4.014840e-04	k: 531	n:1440000
KS ci ratio: 2.733751e-02	ci left: 1.388530e-02	ci right 1.427083e-02	k: 20271	n:1440000
OTUD7A   1440000 perm   993 sec   (1450 perm/sec)   p_kst 1.407708e-02   p_cons 3.687500e-04   p_joint 1.197222e-03

Joint ci ratio: 9.413528e-02	ci left: 1.138243e-03	ci right 1.251351e-03	k: 1731	n:1450000
Cons ci ratio: 1.692869e-01	ci left: 3.383639e-04	ci right 4.015907e-04	k: 535	n:1450000
KS ci ratio: 2.724767e-02	ci left: 1.388132e-02	ci right 1.426545e-02	k: 20405	n:1450000
OTUD7A   1450000 perm   1005 sec   (1443 perm/sec)   p_kst 1.407241e-02   p_cons 3.689655e-04   p_joint 1.193793e-03

Joint ci ratio: 9.373019e-02	ci left: 1.140479e-03	ci right 1.253295e-03	k: 1746	n:1460000
Cons ci ratio: 1.689720e-01	ci left: 3.373582e-04	ci right 4.002679e-04	k: 537	n:1460000
KS ci ratio: 2.718221e-02	ci left: 1.385359e-02	ci right 1.423602e-02	k: 20504	n:1460000
OTUD7A   1460000 perm   1017 sec   (1435 perm/sec)   p_kst 1.404384e-02   p_cons 3.678082e-04   p_joint 1.195890e-03

Joint ci ratio: 9.343652e-02	ci left: 1.140029e-03	ci right 1.252428e-03	k: 1757	n:1470000
Cons ci ratio: 1.685029e-01	ci left: 3.370179e-04	ci right 3.996719e-04	k: 540	n:1470000
KS ci ratio: 2.710121e-02	ci left: 1.384245e-02	ci right 1.422342e-02	k: 20627	n:1470000
OTUD7A   1470000 perm   1029 sec   (1429 perm/sec)   p_kst 1.403197e-02   p_cons 3.673469e-04   p_joint 1.195238e-03

Joint ci ratio: 9.311924e-02	ci left: 1.140245e-03	ci right 1.252263e-03	k: 1769	n:1480000
Cons ci ratio: 1.678834e-01	ci left: 3.373297e-04	ci right 3.997878e-04	k: 544	n:1480000
KS ci ratio: 2.702357e-02	ci left: 1.382878e-02	ci right 1.420826e-02	k: 20746	n:1480000
OTUD7A   1480000 perm   1041 sec   (1422 perm/sec)   p_kst 1.401757e-02   p_cons 3.675676e-04   p_joint 1.195270e-03

Joint ci ratio: 9.290964e-02	ci left: 1.137836e-03	ci right 1.249352e-03	k: 1777	n:1490000
Cons ci ratio: 1.675763e-01	ci left: 3.363517e-04	ci right 3.985033e-04	k: 546	n:1490000
KS ci ratio: 2.692632e-02	ci left: 1.383596e-02	ci right 1.421425e-02	k: 20896	n:1490000
OTUD7A   1490000 perm   1053 sec   (1415 perm/sec)   p_kst 1.402416e-02   p_cons 3.664430e-04   p_joint 1.192617e-03

Joint ci ratio: 9.267547e-02	ci left: 1.136111e-03	ci right 1.247162e-03	k: 1786	n:1500000
Cons ci ratio: 1.668155e-01	ci left: 3.373032e-04	ci right 3.993192e-04	k: 551	n:1500000
KS ci ratio: 2.685146e-02	ci left: 1.382119e-02	ci right 1.419802e-02	k: 21013	n:1500000
OTUD7A   1500000 perm   1065 sec   (1408 perm/sec)   p_kst 1.400867e-02   p_cons 3.673333e-04   p_joint 1.190667e-03

Joint ci ratio: 9.246884e-02	ci left: 1.133763e-03	ci right 1.244324e-03	k: 1794	n:1510000
Cons ci ratio: 1.668157e-01	ci left: 3.350694e-04	ci right 3.966748e-04	k: 551	n:1510000
KS ci ratio: 2.677659e-02	ci left: 1.380728e-02	ci right 1.418266e-02	k: 21131	n:1510000
OTUD7A   1510000 perm   1077 sec   (1402 perm/sec)   p_kst 1.399404e-02   p_cons 3.649007e-04   p_joint 1.188079e-03

Joint ci ratio: 9.211027e-02	ci left: 1.135302e-03	ci right 1.245560e-03	k: 1808	n:1520000
Cons ci ratio: 1.662146e-01	ci left: 3.353869e-04	ci right 3.968062e-04	k: 555	n:1520000
KS ci ratio: 2.669724e-02	ci left: 1.379879e-02	ci right 1.417281e-02	k: 21257	n:1520000
OTUD7A   1520000 perm   1090 sec   (1395 perm/sec)   p_kst 1.398487e-02   p_cons 3.651316e-04   p_joint 1.189474e-03

Joint ci ratio: 9.185679e-02	ci left: 1.134267e-03	ci right 1.244106e-03	k: 1818	n:1530000
Cons ci ratio: 1.656199e-01	ci left: 3.357006e-04	ci right 3.969355e-04	k: 559	n:1530000
KS ci ratio: 2.660661e-02	ci left: 1.380274e-02	ci right 1.417558e-02	k: 21402	n:1530000
OTUD7A   1530000 perm   1102 sec   (1389 perm/sec)   p_kst 1.398824e-02   p_cons 3.653595e-04   p_joint 1.188235e-03

Joint ci ratio: 9.148028e-02	ci left: 1.136419e-03	ci right 1.245991e-03	k: 1833	n:1540000
Cons ci ratio: 1.648853e-01	ci left: 3.366333e-04	ci right 3.977389e-04	k: 564	n:1540000
KS ci ratio: 2.651440e-02	ci left: 1.380922e-02	ci right 1.418092e-02	k: 21551	n:1540000
OTUD7A   1540000 perm   1114 sec   (1382 perm/sec)   p_kst 1.399416e-02   p_cons 3.662338e-04   p_joint 1.190260e-03

Joint ci ratio: 9.120720e-02	ci left: 1.136022e-03	ci right 1.245211e-03	k: 1844	n:1550000
Cons ci ratio: 1.638731e-01	ci left: 3.387918e-04	ci right 3.998746e-04	k: 571	n:1550000
KS ci ratio: 2.644168e-02	ci left: 1.379639e-02	ci right 1.416672e-02	k: 21670	n:1550000
OTUD7A   1550000 perm   1127 sec   (1375 perm/sec)   p_kst 1.398065e-02   p_cons 3.683871e-04   p_joint 1.189677e-03

Joint ci ratio: 8.353472e-02	ci left: 1.350720e-03	ci right 1.469092e-03	k: 2198	n:1560000
Cons ci ratio: 1.630202e-01	ci left: 3.403089e-04	ci right 4.013146e-04	k: 577	n:1560000
KS ci ratio: 2.635239e-02	ci left: 1.380157e-02	ci right 1.417076e-02	k: 21817	n:1560000
OTUD7A   1560000 perm   1140 sec   (1369 perm/sec)   p_kst 1.398526e-02   p_cons 3.698718e-04   p_joint 1.408974e-03

Joint ci ratio: 8.321361e-02	ci left: 1.352719e-03	ci right 1.470789e-03	k: 2215	n:1570000
Cons ci ratio: 1.623196e-01	ci left: 3.411964e-04	ci right 4.020727e-04	k: 582	n:1570000
KS ci ratio: 2.626097e-02	ci left: 1.380984e-02	ci right 1.417795e-02	k: 21969	n:1570000
OTUD7A   1570000 perm   1152 sec   (1362 perm/sec)   p_kst 1.399299e-02   p_cons 3.707006e-04   p_joint 1.410828e-03

Joint ci ratio: 8.297062e-02	ci left: 1.352214e-03	ci right 1.469879e-03	k: 2228	n:1580000
Cons ci ratio: 1.620420e-01	ci left: 3.402514e-04	ci right 4.008451e-04	k: 584	n:1580000
KS ci ratio: 2.618671e-02	ci left: 1.380103e-02	ci right 1.416785e-02	k: 22094	n:1580000
OTUD7A   1580000 perm   1165 sec   (1356 perm/sec)   p_kst 1.398354e-02   p_cons 3.696203e-04   p_joint 1.410127e-03

Joint ci ratio: 8.274823e-02	ci left: 1.351100e-03	ci right 1.468338e-03	k: 2240	n:1590000
Cons ci ratio: 1.613539e-01	ci left: 3.411289e-04	ci right 4.015958e-04	k: 589	n:1590000
KS ci ratio: 2.609818e-02	ci left: 1.380795e-02	ci right 1.417370e-02	k: 22244	n:1590000
OTUD7A   1590000 perm   1178 sec   (1350 perm/sec)   p_kst 1.398994e-02   p_cons 3.704403e-04   p_joint 1.408805e-03

Joint ci ratio: 8.254597e-02	ci left: 1.349389e-03	ci right 1.466178e-03	k: 2251	n:1600000
Cons ci ratio: 1.602707e-01	ci left: 3.437956e-04	ci right 4.042869e-04	k: 597	n:1600000
KS ci ratio: 2.602116e-02	ci left: 1.380361e-02	ci right 1.416815e-02	k: 22376	n:1600000
OTUD7A   1600000 perm   1191 sec   (1344 perm/sec)   p_kst 1.398500e-02   p_cons 3.731250e-04   p_joint 1.406875e-03

Joint ci ratio: 8.232697e-02	ci left: 1.348307e-03	ci right 1.464678e-03	k: 2263	n:1610000
Cons ci ratio: 1.600035e-01	ci left: 3.428527e-04	ci right 4.030677e-04	k: 599	n:1610000
KS ci ratio: 2.593780e-02	ci left: 1.380674e-02	ci right 1.417017e-02	k: 22520	n:1610000
OTUD7A   1610000 perm   1204 sec   (1337 perm/sec)   p_kst 1.398758e-02   p_cons 3.720497e-04   p_joint 1.405590e-03

Joint ci ratio: 8.218206e-02	ci left: 1.344821e-03	ci right 1.460677e-03	k: 2271	n:1620000
Cons ci ratio: 1.600036e-01	ci left: 3.407363e-04	ci right 4.005797e-04	k: 599	n:1620000
KS ci ratio: 2.585582e-02	ci left: 1.380921e-02	ci right 1.417154e-02	k: 22663	n:1620000
OTUD7A   1620000 perm   1217 sec   (1331 perm/sec)   p_kst 1.398951e-02   p_cons 3.697531e-04   p_joint 1.401852e-03

Joint ci ratio: 8.193002e-02	ci left: 1.344983e-03	ci right 1.460481e-03	k: 2285	n:1630000
Cons ci ratio: 1.600038e-01	ci left: 3.386459e-04	ci right 3.981222e-04	k: 599	n:1630000
KS ci ratio: 2.577919e-02	ci left: 1.380678e-02	ci right 1.416796e-02	k: 22798	n:1630000
OTUD7A   1630000 perm   1230 sec   (1325 perm/sec)   p_kst 1.398650e-02   p_cons 3.674847e-04   p_joint 1.401840e-03

Joint ci ratio: 8.168029e-02	ci left: 1.345144e-03	ci right 1.460287e-03	k: 2299	n:1640000
Cons ci ratio: 1.596053e-01	ci left: 3.383371e-04	ci right 3.975970e-04	k: 602	n:1640000
KS ci ratio: 2.570779e-02	ci left: 1.379953e-02	ci right 1.415951e-02	k: 22925	n:1640000
OTUD7A   1640000 perm   1243 sec   (1319 perm/sec)   p_kst 1.397866e-02   p_cons 3.670732e-04   p_joint 1.401829e-03

Joint ci ratio: 8.327292e-02	ci left: 1.285350e-03	ci right 1.397624e-03	k: 2212	n:1650000
Cons ci ratio: 1.588171e-01	ci left: 3.397780e-04	ci right 3.989684e-04	k: 608	n:1650000
KS ci ratio: 2.563529e-02	ci left: 1.379418e-02	ci right 1.415298e-02	k: 23055	n:1650000
OTUD7A   1650000 perm   1256 sec   (1313 perm/sec)   p_kst 1.397273e-02   p_cons 3.684848e-04   p_joint 1.340606e-03

Joint ci ratio: 8.312295e-02	ci left: 1.282326e-03	ci right 1.394124e-03	k: 2220	n:1660000
Cons ci ratio: 1.584273e-01	ci left: 3.394667e-04	ci right 3.984439e-04	k: 611	n:1660000
KS ci ratio: 2.555614e-02	ci left: 1.379668e-02	ci right 1.415442e-02	k: 23198	n:1660000
OTUD7A   1660000 perm   1270 sec   (1308 perm/sec)   p_kst 1.397470e-02   p_cons 3.680723e-04   p_joint 1.337349e-03

Joint ci ratio: 8.299242e-02	ci left: 1.278752e-03	ci right 1.390055e-03	k: 2227	n:1670000
Cons ci ratio: 1.580405e-01	ci left: 3.391592e-04	ci right 3.979255e-04	k: 614	n:1670000
KS ci ratio: 2.547992e-02	ci left: 1.379676e-02	ci right 1.415343e-02	k: 23337	n:1670000
OTUD7A   1670000 perm   1283 sec   (1302 perm/sec)   p_kst 1.397425e-02   p_cons 3.676647e-04   p_joint 1.333533e-03

Joint ci ratio: 8.299275e-02	ci left: 1.271140e-03	ci right 1.381781e-03	k: 2227	n:1680000
Cons ci ratio: 1.577842e-01	ci left: 3.382838e-04	ci right 3.967944e-04	k: 616	n:1680000
KS ci ratio: 2.539835e-02	ci left: 1.380336e-02	ci right 1.415903e-02	k: 23487	n:1680000
OTUD7A   1680000 perm   1296 sec   (1296 perm/sec)   p_kst 1.398036e-02   p_cons 3.666667e-04   p_joint 1.325595e-03

Joint ci ratio: 8.284428e-02	ci left: 1.268254e-03	ci right 1.378437e-03	k: 2235	n:1690000
Cons ci ratio: 1.572752e-01	ci left: 3.385557e-04	ci right 3.969066e-04	k: 620	n:1690000
KS ci ratio: 2.531431e-02	ci left: 1.381340e-02	ci right 1.416815e-02	k: 23643	n:1690000
OTUD7A   1690000 perm   1309 sec   (1291 perm/sec)   p_kst 1.398994e-02   p_cons 3.668639e-04   p_joint 1.322485e-03

Joint ci ratio: 8.267816e-02	ci left: 1.265978e-03	ci right 1.375732e-03	k: 2244	n:1700000
Cons ci ratio: 1.571489e-01	ci left: 3.371293e-04	ci right 3.951832e-04	k: 621	n:1700000
KS ci ratio: 2.524830e-02	ci left: 1.380463e-02	ci right 1.415821e-02	k: 23767	n:1700000
OTUD7A   1700000 perm   1323 sec   (1285 perm/sec)   p_kst 1.398059e-02   p_cons 3.652941e-04   p_joint 1.320000e-03

Joint ci ratio: 8.238504e-02	ci left: 1.267739e-03	ci right 1.377236e-03	k: 2260	n:1710000
Cons ci ratio: 1.565210e-01	ci left: 3.379670e-04	ci right 3.959108e-04	k: 626	n:1710000
KS ci ratio: 2.517320e-02	ci left: 1.380642e-02	ci right 1.415897e-02	k: 23909	n:1710000
OTUD7A   1710000 perm   1336 sec   (1279 perm/sec)   p_kst 1.398187e-02   p_cons 3.660819e-04   p_joint 1.321637e-03

Joint ci ratio: 8.204091e-02	ci left: 1.271188e-03	ci right 1.380503e-03	k: 2279	n:1720000
Cons ci ratio: 1.559005e-01	ci left: 3.387954e-04	ci right 3.966295e-04	k: 631	n:1720000
KS ci ratio: 2.510035e-02	ci left: 1.380645e-02	ci right 1.415798e-02	k: 24048	n:1720000
OTUD7A   1720000 perm   1350 sec   (1274 perm/sec)   p_kst 1.398140e-02   p_cons 3.668605e-04   p_joint 1.325000e-03

Joint ci ratio: 8.189748e-02	ci left: 1.268369e-03	ci right 1.377242e-03	k: 2287	n:1730000
Cons ci ratio: 1.557775e-01	ci left: 3.373926e-04	ci right 3.949374e-04	k: 632	n:1730000
KS ci ratio: 2.502918e-02	ci left: 1.380534e-02	ci right 1.415583e-02	k: 24185	n:1730000
OTUD7A   1730000 perm   1364 sec   (1268 perm/sec)   p_kst 1.397977e-02   p_cons 3.653179e-04   p_joint 1.321965e-03

Joint ci ratio: 8.164805e-02	ci left: 1.268961e-03	ci right 1.377537e-03	k: 2301	n:1740000
Cons ci ratio: 1.550443e-01	ci left: 3.387677e-04	ci right 3.962499e-04	k: 638	n:1740000
KS ci ratio: 2.496330e-02	ci left: 1.379910e-02	ci right 1.414849e-02	k: 24313	n:1740000
OTUD7A   1740000 perm   1378 sec   (1263 perm/sec)   p_kst 1.397299e-02   p_cons 3.666667e-04   p_joint 1.322414e-03

Joint ci ratio: 8.594194e-02	ci left: 1.136387e-03	ci right 1.238990e-03	k: 2077	n:1750000
Cons ci ratio: 1.549232e-01	ci left: 3.373812e-04	ci right 3.945793e-04	k: 639	n:1750000
KS ci ratio: 2.506486e-02	ci left: 1.361121e-02	ci right 1.395726e-02	k: 24121	n:1750000
OTUD7A   1750000 perm   1391 sec   (1258 perm/sec)   p_kst 1.378343e-02   p_cons 3.651429e-04   p_joint 1.186857e-03

Joint ci ratio: 8.588019e-02	ci left: 1.131598e-03	ci right 1.233691e-03	k: 2080	n:1760000
Cons ci ratio: 1.540827e-01	ci left: 3.392878e-04	ci right 3.964682e-04	k: 646	n:1760000
KS ci ratio: 2.498720e-02	ci left: 1.361857e-02	ci right 1.396372e-02	k: 24271	n:1760000
OTUD7A   1760000 perm   1406 sec   (1252 perm/sec)   p_kst 1.379034e-02   p_cons 3.670455e-04   p_joint 1.181818e-03

Joint ci ratio: 8.565413e-02	ci left: 1.131286e-03	ci right 1.233069e-03	k: 2091	n:1770000
Cons ci ratio: 1.539639e-01	ci left: 3.379141e-04	ci right 3.948150e-04	k: 647	n:1770000
KS ci ratio: 2.491078e-02	ci left: 1.362528e-02	ci right 1.396953e-02	k: 24420	n:1770000
OTUD7A   1770000 perm   1419 sec   (1247 perm/sec)   p_kst 1.379661e-02   p_cons 3.655367e-04   p_joint 1.181356e-03

Joint ci ratio: 8.553170e-02	ci left: 1.128229e-03	ci right 1.229585e-03	k: 2097	n:1780000
Cons ci ratio: 1.532559e-01	ci left: 3.392569e-04	ci right 3.960972e-04	k: 653	n:1780000
KS ci ratio: 2.484069e-02	ci left: 1.362578e-02	ci right 1.396906e-02	k: 24558	n:1780000
OTUD7A   1780000 perm   1433 sec   (1242 perm/sec)   p_kst 1.379663e-02   p_cons 3.668539e-04   p_joint 1.178090e-03

Joint ci ratio: 8.536918e-02	ci left: 1.126300e-03	ci right 1.227280e-03	k: 2105	n:1790000
Cons ci ratio: 1.532561e-01	ci left: 3.373616e-04	ci right 3.938844e-04	k: 653	n:1790000
KS ci ratio: 2.476916e-02	ci left: 1.362850e-02	ci right 1.397084e-02	k: 24700	n:1790000
OTUD7A   1790000 perm   1448 sec   (1237 perm/sec)   p_kst 1.379888e-02   p_cons 3.648045e-04   p_joint 1.175978e-03

Joint ci ratio: 8.518742e-02	ci left: 1.124936e-03	ci right 1.225569e-03	k: 2114	n:1800000
Cons ci ratio: 1.529058e-01	ci left: 3.370902e-04	ci right 3.934266e-04	k: 656	n:1800000
KS ci ratio: 2.470177e-02	ci left: 1.362732e-02	ci right 1.396869e-02	k: 24835	n:1800000
OTUD7A   1800000 perm   1462 sec   (1231 perm/sec)   p_kst 1.379722e-02   p_cons 3.644444e-04   p_joint 1.174444e-03

Joint ci ratio: 8.498678e-02	ci left: 1.124128e-03	ci right 1.224440e-03	k: 2124	n:1810000
Cons ci ratio: 1.524424e-01	ci left: 3.373533e-04	ci right 3.935473e-04	k: 660	n:1810000
KS ci ratio: 2.462393e-02	ci left: 1.363824e-02	ci right 1.397879e-02	k: 24992	n:1810000
OTUD7A   1810000 perm   1476 sec   (1226 perm/sec)   p_kst 1.380773e-02   p_cons 3.646409e-04   p_joint 1.173481e-03

Joint ci ratio: 8.484726e-02	ci left: 1.121716e-03	ci right 1.221640e-03	k: 2131	n:1820000
Cons ci ratio: 1.520977e-01	ci left: 3.370853e-04	ci right 3.930960e-04	k: 663	n:1820000
KS ci ratio: 2.455921e-02	ci left: 1.363538e-02	ci right 1.397496e-02	k: 25124	n:1820000
OTUD7A   1820000 perm   1491 sec   (1221 perm/sec)   p_kst 1.380440e-02   p_cons 3.642857e-04   p_joint 1.170879e-03

Joint ci ratio: 8.453057e-02	ci left: 1.124144e-03	ci right 1.223893e-03	k: 2147	n:1830000
Cons ci ratio: 1.518692e-01	ci left: 3.362946e-04	ci right 3.920824e-04	k: 665	n:1830000
KS ci ratio: 2.448860e-02	ci left: 1.363962e-02	ci right 1.397831e-02	k: 25269	n:1830000
OTUD7A   1830000 perm   1505 sec   (1216 perm/sec)   p_kst 1.380820e-02   p_cons 3.633880e-04   p_joint 1.173224e-03

Joint ci ratio: 8.439328e-02	ci left: 1.121759e-03	ci right 1.221126e-03	k: 2154	n:1840000
Cons ci ratio: 1.513023e-01	ci left: 3.370813e-04	ci right 3.927719e-04	k: 670	n:1840000
KS ci ratio: 2.443224e-02	ci left: 1.362869e-02	ci right 1.396632e-02	k: 25386	n:1840000
OTUD7A   1840000 perm   1519 sec   (1211 perm/sec)   p_kst 1.379674e-02   p_cons 3.641304e-04   p_joint 1.170652e-03

Joint ci ratio: 8.404287e-02	ci left: 1.125220e-03	ci right 1.224460e-03	k: 2172	n:1850000
Cons ci ratio: 1.505191e-01	ci left: 3.389001e-04	ci right 3.945753e-04	k: 677	n:1850000
KS ci ratio: 2.436127e-02	ci left: 1.363453e-02	ci right 1.397132e-02	k: 25534	n:1850000
OTUD7A   1850000 perm   1534 sec   (1206 perm/sec)   p_kst 1.380216e-02   p_cons 3.659459e-04   p_joint 1.174054e-03

Joint ci ratio: 8.386943e-02	ci left: 1.123908e-03	ci right 1.222817e-03	k: 2181	n:1860000
Cons ci ratio: 1.499670e-01	ci left: 3.396652e-04	ci right 3.952431e-04	k: 682	n:1860000
KS ci ratio: 2.429331e-02	ci left: 1.363764e-02	ci right 1.397355e-02	k: 25677	n:1860000
OTUD7A   1860000 perm   1549 sec   (1201 perm/sec)   p_kst 1.380484e-02   p_cons 3.666667e-04   p_joint 1.172581e-03

Joint ci ratio: 8.392748e-02	ci left: 1.116327e-03	ci right 1.214640e-03	k: 2178	n:1870000
Cons ci ratio: 1.494211e-01	ci left: 3.404225e-04	ci right 3.959034e-04	k: 687	n:1870000
KS ci ratio: 2.422829e-02	ci left: 1.363806e-02	ci right 1.397307e-02	k: 25815	n:1870000
OTUD7A   1870000 perm   1563 sec   (1196 perm/sec)   p_kst 1.380481e-02   p_cons 3.673797e-04   p_joint 1.164706e-03

Joint ci ratio: 8.373559e-02	ci left: 1.115597e-03	ci right 1.213610e-03	k: 2188	n:1880000
Cons ci ratio: 1.486665e-01	ci left: 3.421963e-04	ci right 3.976596e-04	k: 694	n:1880000
KS ci ratio: 2.416332e-02	ci left: 1.363901e-02	ci right 1.397313e-02	k: 25954	n:1880000
OTUD7A   1880000 perm   1578 sec   (1191 perm/sec)   p_kst 1.380532e-02   p_cons 3.691489e-04   p_joint 1.163830e-03

Joint ci ratio: 8.379335e-02	ci left: 1.108140e-03	ci right 1.205569e-03	k: 2185	n:1890000
Cons ci ratio: 1.485598e-01	ci left: 3.408951e-04	ci right 3.961044e-04	k: 695	n:1890000
KS ci ratio: 2.410496e-02	ci left: 1.363311e-02	ci right 1.396627e-02	k: 26080	n:1890000
OTUD7A   1890000 perm   1593 sec   (1186 perm/sec)   p_kst 1.379894e-02   p_cons 3.677249e-04   p_joint 1.156085e-03

Joint ci ratio: 1.011402e-01	ci left: 7.500370e-04	ci right 8.304446e-04	k: 1500	n:1900000
Cons ci ratio: 1.481347e-01	ci left: 3.411281e-04	ci right 3.962030e-04	k: 699	n:1900000
KS ci ratio: 2.403587e-02	ci left: 1.363983e-02	ci right 1.397218e-02	k: 26230	n:1900000
OTUD7A   1900000 perm   1608 sec   (1182 perm/sec)   p_kst 1.380526e-02   p_cons 3.678947e-04   p_joint 7.894737e-04

Joint ci ratio: 1.007716e-01	ci left: 7.517238e-04	ci right 8.320012e-04	k: 1511	n:1910000
Cons ci ratio: 1.473994e-01	ci left: 3.428715e-04	ci right 3.979289e-04	k: 706	n:1910000
KS ci ratio: 2.397427e-02	ci left: 1.363867e-02	ci right 1.397013e-02	k: 26365	n:1910000
OTUD7A   1910000 perm   1623 sec   (1177 perm/sec)   p_kst 1.380366e-02   p_cons 3.696335e-04   p_joint 7.910995e-04

Joint ci ratio: 1.006387e-01	ci left: 7.498394e-04	ci right 8.298037e-04	k: 1515	n:1920000
Cons ci ratio: 1.471915e-01	ci left: 3.420890e-04	ci right 3.969364e-04	k: 708	n:1920000
KS ci ratio: 2.392184e-02	ci left: 1.362769e-02	ci right 1.395815e-02	k: 26481	n:1920000
OTUD7A   1920000 perm   1638 sec   (1172 perm/sec)   p_kst 1.379219e-02   p_cons 3.687500e-04   p_joint 7.890625e-04

Joint ci ratio: 1.002426e-01	ci left: 7.520157e-04	ci right 8.318779e-04	k: 1527	n:1930000
Cons ci ratio: 1.466751e-01	ci left: 3.428119e-04	ci right 3.975656e-04	k: 713	n:1930000
KS ci ratio: 2.385521e-02	ci left: 1.363331e-02	ci right 1.396297e-02	k: 26629	n:1930000
OTUD7A   1930000 perm   1653 sec   (1168 perm/sec)   p_kst 1.379741e-02   p_cons 3.694301e-04   p_joint 7.911917e-04

Joint ci ratio: 9.994865e-02	ci left: 7.526624e-04	ci right 8.323451e-04	k: 1536	n:1940000
Cons ci ratio: 1.461642e-01	ci left: 3.435278e-04	ci right 3.981879e-04	k: 718	n:1940000
KS ci ratio: 2.379996e-02	ci left: 1.362657e-02	ci right 1.395529e-02	k: 26753	n:1940000
OTUD7A   1940000 perm   1668 sec   (1163 perm/sec)   p_kst 1.379021e-02   p_cons 3.701031e-04   p_joint 7.917526e-04

Joint ci ratio: 9.952849e-02	ci left: 7.553030e-04	ci right 8.349095e-04	k: 1549	n:1950000
Cons ci ratio: 1.455580e-01	ci left: 3.447308e-04	ci right 3.993351e-04	k: 724	n:1950000
KS ci ratio: 2.374284e-02	ci left: 1.362245e-02	ci right 1.395028e-02	k: 26882	n:1950000
OTUD7A   1950000 perm   1683 sec   (1159 perm/sec)   p_kst 1.378564e-02   p_cons 3.712821e-04   p_joint 7.943590e-04

Joint ci ratio: 9.930454e-02	ci left: 7.549321e-04	ci right 8.343100e-04	k: 1556	n:1960000
Cons ci ratio: 1.454579e-01	ci left: 3.434635e-04	ci right 3.978264e-04	k: 725	n:1960000
KS ci ratio: 2.369280e-02	ci left: 1.361077e-02	ci right 1.393761e-02	k: 26996	n:1960000
OTUD7A   1960000 perm   1699 sec   (1154 perm/sec)   p_kst 1.377347e-02   p_cons 3.698980e-04   p_joint 7.938776e-04

Joint ci ratio: 8.586496e-02	ci left: 1.011465e-03	ci right 1.102703e-03	k: 2081	n:1970000
Cons ci ratio: 1.448604e-01	ci left: 3.446551e-04	ci right 3.989632e-04	k: 731	n:1970000
KS ci ratio: 2.364131e-02	ci left: 1.360122e-02	ci right 1.392712e-02	k: 27114	n:1970000
OTUD7A   1970000 perm   1714 sec   (1149 perm/sec)   p_kst 1.376345e-02   p_cons 3.710660e-04   p_joint 1.056345e-03

Joint ci ratio: 8.557764e-02	ci left: 1.013276e-03	ci right 1.104356e-03	k: 2095	n:1980000
Cons ci ratio: 1.442703e-01	ci left: 3.458352e-04	ci right 4.000881e-04	k: 737	n:1980000
KS ci ratio: 2.359104e-02	ci left: 1.359077e-02	ci right 1.391571e-02	k: 27230	n:1980000
OTUD7A   1980000 perm   1729 sec   (1145 perm/sec)   p_kst 1.375253e-02   p_cons 3.722222e-04   p_joint 1.058081e-03

Joint ci ratio: 8.529319e-02	ci left: 1.015069e-03	ci right 1.105991e-03	k: 2109	n:1990000
Cons ci ratio: 1.437840e-01	ci left: 3.465193e-04	ci right 4.006806e-04	k: 742	n:1990000
KS ci ratio: 2.353105e-02	ci left: 1.359191e-02	ci right 1.391604e-02	k: 27369	n:1990000
OTUD7A   1990000 perm   1745 sec   (1140 perm/sec)   p_kst 1.375327e-02   p_cons 3.728643e-04   p_joint 1.059799e-03

Joint ci ratio: 8.513201e-02	ci left: 1.013908e-03	ci right 1.104547e-03	k: 2117	n:2000000
Cons ci ratio: 1.434946e-01	ci left: 3.462328e-04	ci right 4.002311e-04	k: 745	n:2000000
KS ci ratio: 2.347195e-02	ci left: 1.359254e-02	ci right 1.391587e-02	k: 27507	n:2000000
OTUD7A   2000000 perm   1761 sec   (1136 perm/sec)   p_kst 1.375350e-02   p_cons 3.725000e-04   p_joint 1.058500e-03

Joint ci ratio: 8.507195e-02	ci left: 1.010324e-03	ci right 1.100576e-03	k: 2120	n:2010000
Cons ci ratio: 1.432070e-01	ci left: 3.459493e-04	ci right 3.997859e-04	k: 748	n:2010000
KS ci ratio: 2.340771e-02	ci left: 1.359960e-02	ci right 1.392220e-02	k: 27658	n:2010000
OTUD7A   2010000 perm   1777 sec   (1131 perm/sec)   p_kst 1.376020e-02   p_cons 3.721393e-04   p_joint 1.054726e-03

Joint ci ratio: 8.487212e-02	ci left: 1.010168e-03	ci right 1.100183e-03	k: 2130	n:2020000
Cons ci ratio: 1.428261e-01	ci left: 3.461460e-04	ci right 3.998578e-04	k: 752	n:2020000
KS ci ratio: 2.335421e-02	ci left: 1.359478e-02	ci right 1.391651e-02	k: 27785	n:2020000
OTUD7A   2020000 perm   1793 sec   (1127 perm/sec)   p_kst 1.375495e-02   p_cons 3.722772e-04   p_joint 1.054455e-03

Joint ci ratio: 8.461437e-02	ci left: 1.011460e-03	ci right 1.101303e-03	k: 2143	n:2030000
Cons ci ratio: 1.423542e-01	ci left: 3.468161e-04	ci right 4.004389e-04	k: 757	n:2030000
KS ci ratio: 2.329855e-02	ci left: 1.359295e-02	ci right 1.391386e-02	k: 27918	n:2030000
OTUD7A   2030000 perm   1808 sec   (1123 perm/sec)   p_kst 1.375271e-02   p_cons 3.729064e-04   p_joint 1.055665e-03

Joint ci ratio: 8.449631e-02	ci left: 1.009381e-03	ci right 1.098908e-03	k: 2149	n:2040000
Cons ci ratio: 1.422605e-01	ci left: 3.455887e-04	ci right 3.989836e-04	k: 758	n:2040000
KS ci ratio: 2.324916e-02	ci left: 1.358431e-02	ci right 1.390433e-02	k: 28037	n:2040000
OTUD7A   2040000 perm   1824 sec   (1118 perm/sec)   p_kst 1.374363e-02   p_cons 3.715686e-04   p_joint 1.053431e-03

Joint ci ratio: 8.424196e-02	ci left: 1.010665e-03	ci right 1.100023e-03	k: 2162	n:2050000
Cons ci ratio: 1.417942e-01	ci left: 3.462553e-04	ci right 3.995630e-04	k: 763	n:2050000
KS ci ratio: 2.319257e-02	ci left: 1.358449e-02	ci right 1.390372e-02	k: 28174	n:2050000
OTUD7A   2050000 perm   1840 sec   (1114 perm/sec)   p_kst 1.374341e-02   p_cons 3.721951e-04   p_joint 1.054634e-03

Joint ci ratio: 8.408666e-02	ci left: 1.009560e-03	ci right 1.098648e-03	k: 2170	n:2060000
Cons ci ratio: 1.416090e-01	ci left: 3.455109e-04	ci right 3.986286e-04	k: 765	n:2060000
KS ci ratio: 2.313888e-02	ci left: 1.358176e-02	ci right 1.390019e-02	k: 28305	n:2060000
OTUD7A   2060000 perm   1856 sec   (1110 perm/sec)   p_kst 1.374029e-02   p_cons 3.713592e-04   p_joint 1.053398e-03

Joint ci ratio: 8.395149e-02	ci left: 1.007994e-03	ci right 1.096793e-03	k: 2177	n:2070000
Cons ci ratio: 1.411490e-01	ci left: 3.461718e-04	ci right 3.992037e-04	k: 770	n:2070000
KS ci ratio: 2.309338e-02	ci left: 1.356995e-02	ci right 1.388746e-02	k: 28417	n:2070000
OTUD7A   2070000 perm   1872 sec   (1106 perm/sec)   p_kst 1.372802e-02   p_cons 3.719807e-04   p_joint 1.051691e-03

Joint ci ratio: 8.372114e-02	ci left: 1.008796e-03	ci right 1.097410e-03	k: 2189	n:2080000
Cons ci ratio: 1.407843e-01	ci left: 3.463627e-04	ci right 3.992753e-04	k: 774	n:2080000
KS ci ratio: 2.304160e-02	ci left: 1.356589e-02	ci right 1.388258e-02	k: 28545	n:2080000
OTUD7A   2080000 perm   1888 sec   (1101 perm/sec)   p_kst 1.372356e-02   p_cons 3.721154e-04   p_joint 1.052404e-03

Joint ci ratio: 8.531560e-02	ci left: 9.660314e-04	ci right 1.052586e-03	k: 2108	n:2090000
Cons ci ratio: 1.402424e-01	ci left: 3.474754e-04	ci right 4.003366e-04	k: 780	n:2090000
KS ci ratio: 2.299016e-02	ci left: 1.356187e-02	ci right 1.387776e-02	k: 28673	n:2090000
OTUD7A   2090000 perm   1905 sec   (1097 perm/sec)   p_kst 1.371914e-02   p_cons 3.732057e-04   p_joint 1.008612e-03

Joint ci ratio: 8.515429e-02	ci left: 9.651596e-04	ci right 1.051464e-03	k: 2116	n:2100000
Cons ci ratio: 1.399738e-01	ci left: 3.471992e-04	ci right 3.999088e-04	k: 783	n:2100000
KS ci ratio: 2.293584e-02	ci left: 1.356168e-02	ci right 1.387681e-02	k: 28809	n:2100000
OTUD7A   2100000 perm   1921 sec   (1093 perm/sec)   p_kst 1.371857e-02   p_cons 3.728571e-04   p_joint 1.007619e-03

Joint ci ratio: 8.497388e-02	ci left: 9.647600e-04	ci right 1.050837e-03	k: 2125	n:2110000
Cons ci ratio: 1.397068e-01	ci left: 3.469258e-04	ci right 3.994851e-04	k: 786	n:2110000
KS ci ratio: 2.288631e-02	ci left: 1.355631e-02	ci right 1.387062e-02	k: 28934	n:2110000
OTUD7A   2110000 perm   1937 sec   (1089 perm/sec)   p_kst 1.371280e-02   p_cons 3.725118e-04   p_joint 1.007109e-03

Joint ci ratio: 8.481449e-02	ci left: 9.639027e-04	ci right 1.049734e-03	k: 2133	n:2120000
Cons ci ratio: 1.395297e-01	ci left: 3.461998e-04	ci right 3.985770e-04	k: 788	n:2120000
KS ci ratio: 2.283591e-02	ci left: 1.355240e-02	ci right 1.386592e-02	k: 29062	n:2120000
OTUD7A   2120000 perm   1954 sec   (1085 perm/sec)   p_kst 1.370849e-02   p_cons 3.716981e-04   p_joint 1.006132e-03

Joint ci ratio: 8.459672e-02	ci left: 9.644323e-04	ci right 1.050079e-03	k: 2144	n:2130000
Cons ci ratio: 1.390021e-01	ci left: 3.472932e-04	ci right 3.996207e-04	k: 794	n:2130000
KS ci ratio: 2.277951e-02	ci left: 1.355599e-02	ci right 1.386881e-02	k: 29206	n:2130000
OTUD7A   2130000 perm   1970 sec   (1081 perm/sec)   p_kst 1.371174e-02   p_cons 3.727700e-04   p_joint 1.006573e-03

Joint ci ratio: 8.441982e-02	ci left: 9.640423e-04	ci right 1.049467e-03	k: 2153	n:2140000
Cons ci ratio: 1.386537e-01	ci left: 3.474746e-04	ci right 3.996874e-04	k: 798	n:2140000
KS ci ratio: 2.272863e-02	ci left: 1.355351e-02	ci right 1.386556e-02	k: 29337	n:2140000
OTUD7A   2140000 perm   1987 sec   (1077 perm/sec)   p_kst 1.370888e-02   p_cons 3.728972e-04   p_joint 1.006075e-03

Joint ci ratio: 8.418561e-02	ci left: 9.650222e-04	ci right 1.050285e-03	k: 2165	n:2150000
Cons ci ratio: 1.382219e-01	ci left: 3.481035e-04	ci right 4.002344e-04	k: 803	n:2150000
KS ci ratio: 2.267301e-02	ci left: 1.355707e-02	ci right 1.386843e-02	k: 29481	n:2150000
OTUD7A   2150000 perm   2003 sec   (1073 perm/sec)   p_kst 1.371209e-02   p_cons 3.734884e-04   p_joint 1.006977e-03

Joint ci ratio: 8.395334e-02	ci left: 9.659932e-04	ci right 1.051094e-03	k: 2177	n:2160000
Cons ci ratio: 1.379647e-01	ci left: 3.478328e-04	ci right 3.998184e-04	k: 806	n:2160000
KS ci ratio: 2.261665e-02	ci left: 1.356198e-02	ci right 1.387266e-02	k: 29628	n:2160000
OTUD7A   2160000 perm   2020 sec   (1069 perm/sec)   p_kst 1.371667e-02   p_cons 3.731481e-04   p_joint 1.007870e-03

Joint ci ratio: 8.381881e-02	ci left: 9.646998e-04	ci right 1.049544e-03	k: 2184	n:2170000
Cons ci ratio: 1.375393e-01	ci left: 3.484546e-04	ci right 4.003594e-04	k: 811	n:2170000
KS ci ratio: 2.256339e-02	ci left: 1.356363e-02	ci right 1.387362e-02	k: 29768	n:2170000
OTUD7A   2170000 perm   2037 sec   (1066 perm/sec)   p_kst 1.371797e-02   p_cons 3.737327e-04   p_joint 1.006452e-03

Joint ci ratio: 8.364674e-02	ci left: 9.643165e-04	ci right 1.048945e-03	k: 2193	n:2180000
Cons ci ratio: 1.372859e-01	ci left: 3.481850e-04	ci right 3.999463e-04	k: 814	n:2180000
KS ci ratio: 2.251470e-02	ci left: 1.356025e-02	ci right 1.386948e-02	k: 29897	n:2180000
OTUD7A   2180000 perm   2053 sec   (1062 perm/sec)   p_kst 1.371422e-02   p_cons 3.733945e-04   p_joint 1.005963e-03

Joint ci ratio: 8.339996e-02	ci left: 9.657254e-04	ci right 1.050215e-03	k: 2206	n:2190000
Cons ci ratio: 1.369502e-01	ci left: 3.483590e-04	ci right 4.000092e-04	k: 818	n:2190000
KS ci ratio: 2.246367e-02	ci left: 1.356008e-02	ci right 1.386860e-02	k: 30033	n:2190000
OTUD7A   2190000 perm   2070 sec   (1058 perm/sec)   p_kst 1.371370e-02   p_cons 3.735160e-04   p_joint 1.007306e-03

Joint ci ratio: 8.315536e-02	ci left: 9.671218e-04	ci right 1.051473e-03	k: 2219	n:2200000
Cons ci ratio: 1.364513e-01	ci left: 3.494095e-04	ci right 4.010114e-04	k: 824	n:2200000
KS ci ratio: 2.241262e-02	ci left: 1.356037e-02	ci right 1.386818e-02	k: 30170	n:2200000
OTUD7A   2200000 perm   2087 sec   (1054 perm/sec)   p_kst 1.371364e-02   p_cons 3.745455e-04   p_joint 1.008636e-03

Joint ci ratio: 8.353305e-02	ci left: 9.538842e-04	ci right 1.037477e-03	k: 2199	n:2210000
Cons ci ratio: 1.360396e-01	ci left: 3.500138e-04	ci right 4.015364e-04	k: 829	n:2210000
KS ci ratio: 2.236116e-02	ci left: 1.356156e-02	ci right 1.386868e-02	k: 30309	n:2210000
OTUD7A   2210000 perm   2104 sec   (1051 perm/sec)   p_kst 1.371448e-02   p_cons 3.751131e-04   p_joint 9.950226e-04

Joint ci ratio: 8.334385e-02	ci left: 9.539980e-04	ci right 1.037403e-03	k: 2209	n:2220000
Cons ci ratio: 1.358760e-01	ci left: 3.493075e-04	ci right 4.006592e-04	k: 831	n:2220000
KS ci ratio: 2.229965e-02	ci left: 1.357527e-02	ci right 1.388185e-02	k: 30476	n:2220000
OTUD7A   2220000 perm   2121 sec   (1047 perm/sec)   p_kst 1.372793e-02   p_cons 3.743243e-04   p_joint 9.950450e-04

Joint ci ratio: 8.203536e-02	ci left: 9.809008e-04	ci right 1.065247e-03	k: 2280	n:2230000
Cons ci ratio: 1.353079e-01	ci left: 3.507736e-04	ci right 4.021079e-04	k: 838	n:2230000
KS ci ratio: 2.225118e-02	ci left: 1.357371e-02	ci right 1.387958e-02	k: 30609	n:2230000
OTUD7A   2230000 perm   2138 sec   (1043 perm/sec)   p_kst 1.372601e-02   p_cons 3.757848e-04   p_joint 1.022422e-03

Joint ci ratio: 8.190983e-02	ci left: 9.795826e-04	ci right 1.063680e-03	k: 2287	n:2240000
Cons ci ratio: 1.349865e-01	ci left: 3.509330e-04	ci right 4.021588e-04	k: 842	n:2240000
KS ci ratio: 2.220228e-02	ci left: 1.357304e-02	ci right 1.387822e-02	k: 30744	n:2240000
OTUD7A   2240000 perm   2155 sec   (1039 perm/sec)   p_kst 1.372500e-02   p_cons 3.758929e-04   p_joint 1.020982e-03

Joint ci ratio: 8.171363e-02	ci left: 9.800178e-04	ci right 1.063942e-03	k: 2298	n:2250000
Cons ci ratio: 1.348267e-01	ci left: 3.502322e-04	ci right 4.012904e-04	k: 844	n:2250000
KS ci ratio: 2.215189e-02	ci left: 1.357460e-02	ci right 1.387910e-02	k: 30884	n:2250000
OTUD7A   2250000 perm   2173 sec   (1036 perm/sec)   p_kst 1.372622e-02   p_cons 3.751111e-04   p_joint 1.021333e-03

Joint ci ratio: 8.148352e-02	ci left: 9.813163e-04	ci right 1.065103e-03	k: 2311	n:2260000
Cons ci ratio: 1.345087e-01	ci left: 3.503928e-04	ci right 4.013442e-04	k: 848	n:2260000
KS ci ratio: 2.210437e-02	ci left: 1.357305e-02	ci right 1.387687e-02	k: 31017	n:2260000
OTUD7A   2260000 perm   2190 sec   (1032 perm/sec)   p_kst 1.372434e-02   p_cons 3.752212e-04   p_joint 1.022566e-03

Joint ci ratio: 8.127285e-02	ci left: 9.821721e-04	ci right 1.065805e-03	k: 2323	n:2270000
Cons ci ratio: 1.338013e-01	ci left: 3.526809e-04	ci right 4.036739e-04	k: 857	n:2270000
KS ci ratio: 2.205823e-02	ci left: 1.357021e-02	ci right 1.387332e-02	k: 31147	n:2270000
OTUD7A   2270000 perm   2208 sec   (1028 perm/sec)   p_kst 1.372115e-02   p_cons 3.775330e-04   p_joint 1.023348e-03

Joint ci ratio: 8.108117e-02	ci left: 9.825910e-04	ci right 1.066053e-03	k: 2334	n:2280000
Cons ci ratio: 1.337234e-01	ci left: 3.515580e-04	ci right 4.023567e-04	k: 858	n:2280000
KS ci ratio: 2.201024e-02	ci left: 1.357002e-02	ci right 1.387245e-02	k: 31283	n:2280000
OTUD7A   2280000 perm   2226 sec   (1024 perm/sec)   p_kst 1.372061e-02   p_cons 3.763158e-04   p_joint 1.023684e-03

Joint ci ratio: 8.095997e-02	ci left: 9.812950e-04	ci right 1.064517e-03	k: 2341	n:2290000
Cons ci ratio: 1.336458e-01	ci left: 3.504448e-04	ci right 4.010510e-04	k: 859	n:2290000
KS ci ratio: 2.195512e-02	ci left: 1.357894e-02	ci right 1.388081e-02	k: 31440	n:2290000
OTUD7A   2290000 perm   2244 sec   (1021 perm/sec)   p_kst 1.372926e-02   p_cons 3.751092e-04   p_joint 1.022271e-03

Joint ci ratio: 8.080488e-02	ci left: 9.808624e-04	ci right 1.063880e-03	k: 2350	n:2300000
Cons ci ratio: 1.334133e-01	ci left: 3.501819e-04	ci right 4.006552e-04	k: 862	n:2300000
KS ci ratio: 2.191026e-02	ci left: 1.357568e-02	ci right 1.387685e-02	k: 31569	n:2300000
OTUD7A   2300000 perm   2262 sec   (1017 perm/sec)   p_kst 1.372565e-02   p_cons 3.747826e-04   p_joint 1.021739e-03

Joint ci ratio: 8.066779e-02	ci left: 9.800095e-04	ci right 1.062808e-03	k: 2358	n:2310000
Cons ci ratio: 1.331820e-01	ci left: 3.499214e-04	ci right 4.002627e-04	k: 865	n:2310000
KS ci ratio: 2.186602e-02	ci left: 1.357202e-02	ci right 1.387249e-02	k: 31697	n:2310000
OTUD7A   2310000 perm   2279 sec   (1013 perm/sec)   p_kst 1.372165e-02   p_cons 3.744589e-04   p_joint 1.020779e-03

Joint ci ratio: 8.066796e-02	ci left: 9.757853e-04	ci right 1.058227e-03	k: 2358	n:2320000
Cons ci ratio: 1.326469e-01	ci left: 3.513300e-04	ci right 4.016549e-04	k: 872	n:2320000
KS ci ratio: 2.182135e-02	ci left: 1.356925e-02	ci right 1.386904e-02	k: 31827	n:2320000
OTUD7A   2320000 perm   2297 sec   (1010 perm/sec)   p_kst 1.371853e-02   p_cons 3.758621e-04   p_joint 1.016379e-03

Joint ci ratio: 8.059977e-02	ci left: 9.732794e-04	ci right 1.055437e-03	k: 2362	n:2330000
Cons ci ratio: 1.325711e-01	ci left: 3.502371e-04	ci right 4.003745e-04	k: 873	n:2330000
KS ci ratio: 2.177868e-02	ci left: 1.356437e-02	ci right 1.386345e-02	k: 31952	n:2330000
OTUD7A   2330000 perm   2315 sec   (1006 perm/sec)   p_kst 1.371330e-02   p_cons 3.746781e-04   p_joint 1.013734e-03

Joint ci ratio: 8.049770e-02	ci left: 9.716325e-04	ci right 1.053542e-03	k: 2368	n:2340000
Cons ci ratio: 1.320433e-01	ci left: 3.516328e-04	ci right 4.017539e-04	k: 880	n:2340000
KS ci ratio: 2.173592e-02	ci left: 1.355995e-02	ci right 1.385835e-02	k: 32078	n:2340000
OTUD7A   2340000 perm   2333 sec   (1003 perm/sec)   p_kst 1.370855e-02   p_cons 3.760684e-04   p_joint 1.011966e-03

Joint ci ratio: 8.039603e-02	ci left: 9.699997e-04	ci right 1.051663e-03	k: 2374	n:2350000
Cons ci ratio: 1.318190e-01	ci left: 3.513710e-04	ci right 4.013630e-04	k: 883	n:2350000
KS ci ratio: 2.169410e-02	ci left: 1.355473e-02	ci right 1.385243e-02	k: 32202	n:2350000
OTUD7A   2350000 perm   2351 sec   (999 perm/sec)   p_kst 1.370298e-02   p_cons 3.757447e-04   p_joint 1.010213e-03

Joint ci ratio: 7.999264e-02	ci left: 9.758552e-04	ci right 1.057581e-03	k: 2398	n:2360000
Cons ci ratio: 1.315960e-01	ci left: 3.511114e-04	ci right 4.009754e-04	k: 886	n:2360000
KS ci ratio: 2.165013e-02	ci left: 1.355250e-02	ci right 1.384954e-02	k: 32333	n:2360000
OTUD7A   2360000 perm   2369 sec   (996 perm/sec)   p_kst 1.370042e-02   p_cons 3.754237e-04   p_joint 1.016102e-03

Joint ci ratio: 7.987624e-02	ci left: 9.746322e-04	ci right 1.056131e-03	k: 2405	n:2370000
Cons ci ratio: 1.311531e-01	ci left: 3.520784e-04	ci right 4.018983e-04	k: 892	n:2370000
KS ci ratio: 2.161116e-02	ci left: 1.354442e-02	ci right 1.384074e-02	k: 32450	n:2370000
OTUD7A   2370000 perm   2387 sec   (993 perm/sec)   p_kst 1.369198e-02   p_cons 3.763713e-04   p_joint 1.014768e-03

Joint ci ratio: 7.976035e-02	ci left: 9.734196e-04	ci right 1.054693e-03	k: 2412	n:2380000
Cons ci ratio: 1.309333e-01	ci left: 3.518182e-04	ci right 4.015115e-04	k: 895	n:2380000
KS ci ratio: 2.156938e-02	ci left: 1.354016e-02	ci right 1.383581e-02	k: 32576	n:2380000
OTUD7A   2380000 perm   2405 sec   (989 perm/sec)   p_kst 1.368739e-02   p_cons 3.760504e-04   p_joint 1.013445e-03

Joint ci ratio: 7.956273e-02	ci left: 9.742676e-04	ci right 1.055401e-03	k: 2424	n:2390000
Cons ci ratio: 1.307147e-01	ci left: 3.515604e-04	ci right 4.011278e-04	k: 898	n:2390000
KS ci ratio: 2.152383e-02	ci left: 1.354094e-02	ci right 1.383597e-02	k: 32714	n:2390000
OTUD7A   2390000 perm   2424 sec   (986 perm/sec)   p_kst 1.368787e-02   p_cons 3.757322e-04   p_joint 1.014226e-03

Joint ci ratio: 7.964513e-02	ci left: 9.681662e-04	ci right 1.048879e-03	k: 2419	n:2400000
Cons ci ratio: 1.304972e-01	ci left: 3.513047e-04	ci right 4.007472e-04	k: 901	n:2400000
KS ci ratio: 2.147924e-02	ci left: 1.354088e-02	ci right 1.383529e-02	k: 32850	n:2400000
OTUD7A   2400000 perm   2442 sec   (983 perm/sec)   p_kst 1.368750e-02   p_cons 3.754167e-04   p_joint 1.007917e-03

Joint ci ratio: 7.951385e-02	ci left: 9.674023e-04	ci right 1.047912e-03	k: 2427	n:2410000
Cons ci ratio: 1.304250e-01	ci left: 3.502484e-04	ci right 3.995129e-04	k: 902	n:2410000
KS ci ratio: 2.143195e-02	ci left: 1.354454e-02	ci right 1.383838e-02	k: 32995	n:2410000
OTUD7A   2410000 perm   2461 sec   (979 perm/sec)   p_kst 1.369087e-02   p_cons 3.742739e-04   p_joint 1.007054e-03

Joint ci ratio: 7.019033e-02	ci left: 1.242002e-03	ci right 1.332752e-03	k: 3114	n:2420000
Cons ci ratio: 1.300653e-01	ci left: 3.507999e-04	ci right 3.999954e-04	k: 907	n:2420000
KS ci ratio: 2.139185e-02	ci left: 1.353953e-02	ci right 1.383271e-02	k: 33119	n:2420000
OTUD7A   2420000 perm   2479 sec   (976 perm/sec)   p_kst 1.368554e-02   p_cons 3.747934e-04   p_joint 1.286777e-03

Joint ci ratio: 9.073604e-02	ci left: 7.326592e-04	ci right 8.026958e-04	k: 1864	n:2430000
Cons ci ratio: 1.294254e-01	ci left: 3.529398e-04	ci right 4.021731e-04	k: 916	n:2430000
KS ci ratio: 2.045217e-02	ci left: 1.474027e-02	ci right 1.504525e-02	k: 36188	n:2430000
OTUD7A   2430000 perm   2497 sec   (973 perm/sec)   p_kst 1.489218e-02   p_cons 3.769547e-04   p_joint 7.670782e-04

Joint ci ratio: 9.056625e-02	ci left: 7.324603e-04	ci right 8.023399e-04	k: 1871	n:2440000
Cons ci ratio: 1.291440e-01	ci left: 3.530796e-04	ci right 4.022172e-04	k: 920	n:2440000
KS ci ratio: 2.041305e-02	ci left: 1.473653e-02	ci right 1.504085e-02	k: 36327	n:2440000
OTUD7A   2440000 perm   2516 sec   (970 perm/sec)   p_kst 1.488811e-02   p_cons 3.770492e-04   p_joint 7.668033e-04

Joint ci ratio: 9.027728e-02	ci left: 7.342579e-04	ci right 8.040737e-04	k: 1883	n:2450000
Cons ci ratio: 1.285174e-01	ci left: 3.551936e-04	ci right 4.043673e-04	k: 929	n:2450000
KS ci ratio: 2.037415e-02	ci left: 1.473283e-02	ci right 1.503649e-02	k: 36466	n:2450000
OTUD7A   2450000 perm   2535 sec   (967 perm/sec)   p_kst 1.488408e-02   p_cons 3.791837e-04   p_joint 7.685714e-04

Joint ci ratio: 9.020558e-02	ci left: 7.324651e-04	ci right 8.020522e-04	k: 1886	n:2460000
Cons ci ratio: 1.282419e-01	ci left: 3.553235e-04	ci right 4.044017e-04	k: 933	n:2460000
KS ci ratio: 2.032674e-02	ci left: 1.474169e-02	ci right 1.504482e-02	k: 36636	n:2460000
OTUD7A   2460000 perm   2553 sec   (963 perm/sec)   p_kst 1.489268e-02   p_cons 3.792683e-04   p_joint 7.666667e-04

Joint ci ratio: 9.011019e-02	ci left: 7.310825e-04	ci right 8.004609e-04	k: 1890	n:2470000
Cons ci ratio: 1.282420e-01	ci left: 3.538849e-04	ci right 4.027645e-04	k: 933	n:2470000
KS ci ratio: 2.028945e-02	ci left: 1.473639e-02	ci right 1.503884e-02	k: 36771	n:2470000
OTUD7A   2470000 perm   2572 sec   (960 perm/sec)   p_kst 1.488704e-02   p_cons 3.777328e-04   p_joint 7.651822e-04

Joint ci ratio: 9.003888e-02	ci left: 7.293170e-04	ci right 7.984702e-04	k: 1893	n:2480000
Cons ci ratio: 1.279683e-01	ci left: 3.540192e-04	ci right 4.028050e-04	k: 937	n:2480000
KS ci ratio: 2.025404e-02	ci left: 1.472872e-02	ci right 1.503048e-02	k: 36900	n:2480000
OTUD7A   2480000 perm   2591 sec   (957 perm/sec)   p_kst 1.487903e-02   p_cons 3.778226e-04   p_joint 7.633065e-04

Joint ci ratio: 9.003902e-02	ci left: 7.263880e-04	ci right 7.952636e-04	k: 1893	n:2490000
Cons ci ratio: 1.276963e-01	ci left: 3.541525e-04	ci right 4.028451e-04	k: 941	n:2490000
KS ci ratio: 2.021410e-02	ci left: 1.472790e-02	ci right 1.502905e-02	k: 37046	n:2490000
OTUD7A   2490000 perm   2609 sec   (954 perm/sec)   p_kst 1.487791e-02   p_cons 3.779116e-04   p_joint 7.602410e-04

Joint ci ratio: 8.977863e-02	ci left: 7.277835e-04	ci right 7.965814e-04	k: 1904	n:2500000
Cons ci ratio: 1.272915e-01	ci left: 3.550593e-04	ci right 4.037102e-04	k: 947	n:2500000
KS ci ratio: 2.017440e-02	ci left: 1.472710e-02	ci right 1.502763e-02	k: 37192	n:2500000
OTUD7A   2500000 perm   2628 sec   (951 perm/sec)   p_kst 1.487680e-02   p_cons 3.788000e-04   p_joint 7.616000e-04

Joint ci ratio: 8.952048e-02	ci left: 7.291682e-04	ci right 7.978884e-04	k: 1915	n:2510000
Cons ci ratio: 1.270906e-01	ci left: 3.548019e-04	ci right 4.033350e-04	k: 950	n:2510000
KS ci ratio: 2.013356e-02	ci left: 1.472828e-02	ci right 1.502822e-02	k: 37343	n:2510000
OTUD7A   2510000 perm   2647 sec   (948 perm/sec)   p_kst 1.487769e-02   p_cons 3.784861e-04   p_joint 7.629482e-04

Joint ci ratio: 8.935741e-02	ci left: 7.289903e-04	ci right 7.975621e-04	k: 1922	n:2520000
Cons ci ratio: 1.268906e-01	ci left: 3.545467e-04	ci right 4.029627e-04	k: 953	n:2520000
KS ci ratio: 2.008916e-02	ci left: 1.473498e-02	ci right 1.503439e-02	k: 37508	n:2520000
OTUD7A   2520000 perm   2666 sec   (945 perm/sec)   p_kst 1.488413e-02   p_cons 3.781746e-04   p_joint 7.626984e-04

Joint ci ratio: 8.914901e-02	ci left: 7.295869e-04	ci right 7.980464e-04	k: 1931	n:2530000
Cons ci ratio: 1.267579e-01	ci left: 3.539107e-04	ci right 4.021856e-04	k: 955	n:2530000
KS ci ratio: 2.004911e-02	ci left: 1.473573e-02	ci right 1.503455e-02	k: 37658	n:2530000
OTUD7A   2530000 perm   2686 sec   (942 perm/sec)   p_kst 1.488458e-02   p_cons 3.774704e-04   p_joint 7.632411e-04

Joint ci ratio: 8.898796e-02	ci left: 7.294090e-04	ci right 7.977217e-04	k: 1938	n:2540000
Cons ci ratio: 1.265595e-01	ci left: 3.536610e-04	ci right 4.018207e-04	k: 958	n:2540000
KS ci ratio: 2.000956e-02	ci left: 1.473609e-02	ci right 1.503431e-02	k: 37807	n:2540000
OTUD7A   2540000 perm   2705 sec   (939 perm/sec)   p_kst 1.488465e-02   p_cons 3.771654e-04   p_joint 7.629921e-04

Joint ci ratio: 8.880494e-02	ci left: 7.296161e-04	ci right 7.978004e-04	k: 1946	n:2550000
Cons ci ratio: 1.261000e-01	ci left: 3.549325e-04	ci right 4.030767e-04	k: 965	n:2550000
KS ci ratio: 1.996891e-02	ci left: 1.473839e-02	ci right 1.503605e-02	k: 37961	n:2550000
OTUD7A   2550000 perm   2724 sec   (936 perm/sec)   p_kst 1.488667e-02   p_cons 3.784314e-04   p_joint 7.631373e-04

Joint ci ratio: 7.803431e-02	ci left: 9.463308e-04	ci right 1.023555e-03	k: 2520	n:2560000
Cons ci ratio: 1.255165e-01	ci left: 3.569511e-04	ci right 4.051284e-04	k: 974	n:2560000
KS ci ratio: 1.992825e-02	ci left: 1.474106e-02	ci right 1.503816e-02	k: 38116	n:2560000
OTUD7A   2560000 perm   2744 sec   (933 perm/sec)   p_kst 1.488906e-02   p_cons 3.804688e-04   p_joint 9.843750e-04

Joint ci ratio: 7.811204e-02	ci left: 9.407409e-04	ci right 1.017589e-03	k: 2515	n:2570000
Cons ci ratio: 1.253880e-01	ci left: 3.563159e-04	ci right 4.043546e-04	k: 976	n:2570000
KS ci ratio: 1.988730e-02	ci left: 1.474449e-02	ci right 1.504104e-02	k: 38273	n:2570000
OTUD7A   2570000 perm   2763 sec   (930 perm/sec)   p_kst 1.489222e-02   p_cons 3.797665e-04   p_joint 9.785992e-04

Joint ci ratio: 7.803461e-02	ci left: 9.389947e-04	ci right 1.015621e-03	k: 2520	n:2580000
Cons ci ratio: 1.250684e-01	ci left: 3.568121e-04	ci right 4.047860e-04	k: 981	n:2580000
KS ci ratio: 1.984503e-02	ci left: 1.475020e-02	ci right 1.504624e-02	k: 38436	n:2580000
OTUD7A   2580000 perm   2783 sec   (927 perm/sec)   p_kst 1.489767e-02   p_cons 3.802326e-04   p_joint 9.767442e-04

Joint ci ratio: 7.801927e-02	ci left: 9.357478e-04	ci right 1.012093e-03	k: 2521	n:2590000
Cons ci ratio: 1.247512e-01	ci left: 3.573047e-04	ci right 4.052139e-04	k: 986	n:2590000
KS ci ratio: 1.981007e-02	ci left: 1.474550e-02	ci right 1.504091e-02	k: 38572	n:2590000
OTUD7A   2590000 perm   2802 sec   (924 perm/sec)   p_kst 1.489266e-02   p_cons 3.806950e-04   p_joint 9.733591e-04

Joint ci ratio: 7.795756e-02	ci left: 9.336572e-04	ci right 1.009769e-03	k: 2525	n:2600000
Cons ci ratio: 1.244364e-01	ci left: 3.577936e-04	ci right 4.056384e-04	k: 991	n:2600000
KS ci ratio: 1.976984e-02	ci left: 1.474887e-02	ci right 1.504375e-02	k: 38729	n:2600000
OTUD7A   2600000 perm   2822 sec   (921 perm/sec)   p_kst 1.489577e-02   p_cons 3.811538e-04   p_joint 9.711538e-04

Joint ci ratio: 7.783443e-02	ci left: 9.330854e-04	ci right 1.009025e-03	k: 2533	n:2610000
Cons ci ratio: 1.242486e-01	ci left: 3.575364e-04	ci right 4.052694e-04	k: 994	n:2610000
KS ci ratio: 1.973734e-02	ci left: 1.474116e-02	ci right 1.503539e-02	k: 38857	n:2610000
OTUD7A   2610000 perm   2841 sec   (919 perm/sec)   p_kst 1.488774e-02   p_cons 3.808429e-04   p_joint 9.704981e-04

Joint ci ratio: 6.962544e-02	ci left: 1.166316e-03	ci right 1.250823e-03	k: 3165	n:2620000
Cons ci ratio: 1.239996e-01	ci left: 3.576511e-04	ci right 4.052966e-04	k: 998	n:2620000
KS ci ratio: 1.969858e-02	ci left: 1.474301e-02	ci right 1.503669e-02	k: 39010	n:2620000
OTUD7A   2620000 perm   2861 sec   (916 perm/sec)   p_kst 1.488931e-02   p_cons 3.809160e-04   p_joint 1.208015e-03

Joint ci ratio: 7.047766e-02	ci left: 1.133490e-03	ci right 1.216664e-03	k: 3089	n:2630000
Cons ci ratio: 1.236289e-01	ci left: 3.585019e-04	ci right 4.061076e-04	k: 1004	n:2630000
KS ci ratio: 1.965674e-02	ci left: 1.474976e-02	ci right 1.504294e-02	k: 39176	n:2630000
OTUD7A   2630000 perm   2881 sec   (913 perm/sec)   p_kst 1.489582e-02   p_cons 3.817490e-04   p_joint 1.174525e-03

Joint ci ratio: 7.034120e-02	ci left: 1.133662e-03	ci right 1.216681e-03	k: 3101	n:2640000
Cons ci ratio: 1.232614e-01	ci left: 3.593465e-04	ci right 4.069121e-04	k: 1010	n:2640000
KS ci ratio: 1.961592e-02	ci left: 1.475533e-02	ci right 1.504801e-02	k: 39339	n:2640000
OTUD7A   2640000 perm   2901 sec   (910 perm/sec)   p_kst 1.490114e-02   p_cons 3.825758e-04   p_joint 1.174621e-03

Joint ci ratio: 7.018298e-02	ci left: 1.134574e-03	ci right 1.217466e-03	k: 3115	n:2650000
Cons ci ratio: 1.228972e-01	ci left: 3.601849e-04	ci right 4.077104e-04	k: 1016	n:2650000
KS ci ratio: 1.957837e-02	ci left: 1.475635e-02	ci right 1.504848e-02	k: 39490	n:2650000
OTUD7A   2650000 perm   2921 sec   (907 perm/sec)   p_kst 1.490189e-02   p_cons 3.833962e-04   p_joint 1.175472e-03

Joint ci ratio: 7.007065e-02	ci left: 1.134002e-03	ci right 1.216714e-03	k: 3125	n:2660000
Cons ci ratio: 1.227164e-01	ci left: 3.599240e-04	ci right 4.073401e-04	k: 1019	n:2660000
KS ci ratio: 1.953629e-02	ci left: 1.476447e-02	ci right 1.505613e-02	k: 39660	n:2660000
OTUD7A   2660000 perm   2941 sec   (905 perm/sec)   p_kst 1.490977e-02   p_cons 3.830827e-04   p_joint 1.174812e-03

Joint ci ratio: 7.366129e-02	ci left: 1.020515e-03	ci right 1.098926e-03	k: 2828	n:2670000
Cons ci ratio: 1.225963e-01	ci left: 3.593020e-04	ci right 4.065866e-04	k: 1021	n:2670000
KS ci ratio: 1.949970e-02	ci left: 1.476471e-02	ci right 1.505582e-02	k: 39809	n:2670000
OTUD7A   2670000 perm   2960 sec   (902 perm/sec)   p_kst 1.490974e-02   p_cons 3.823970e-04   p_joint 1.059176e-03

Joint ci ratio: 7.350554e-02	ci left: 1.021102e-03	ci right 1.099386e-03	k: 2840	n:2680000
Cons ci ratio: 1.221785e-01	ci left: 3.604934e-04	ci right 4.077613e-04	k: 1028	n:2680000
KS ci ratio: 1.945565e-02	ci left: 1.477646e-02	ci right 1.506713e-02	k: 39989	n:2680000
OTUD7A   2680000 perm   2980 sec   (899 perm/sec)   p_kst 1.492127e-02   p_cons 3.835821e-04   p_joint 1.059701e-03

Joint ci ratio: 7.336364e-02	ci left: 1.021320e-03	ci right 1.099463e-03	k: 2851	n:2690000
Cons ci ratio: 1.220008e-01	ci left: 3.602344e-04	ci right 4.073948e-04	k: 1031	n:2690000
KS ci ratio: 1.941631e-02	ci left: 1.478146e-02	ci right 1.507163e-02	k: 40151	n:2690000
OTUD7A   2690000 perm   3001 sec   (896 perm/sec)   p_kst 1.492602e-02   p_cons 3.832714e-04   p_joint 1.059851e-03

Joint ci ratio: 7.402937e-02	ci left: 9.989962e-04	ci right 1.076154e-03	k: 2800	n:2700000
Cons ci ratio: 1.219418e-01	ci left: 3.592593e-04	ci right 4.062676e-04	k: 1032	n:2700000
KS ci ratio: 1.937673e-02	ci left: 1.478716e-02	ci right 1.507685e-02	k: 40315	n:2700000
OTUD7A   2700000 perm   3021 sec   (894 perm/sec)   p_kst 1.493148e-02   p_cons 3.822222e-04   p_joint 1.037037e-03

Joint ci ratio: 7.664906e-02	ci left: 9.272423e-04	ci right 1.001506e-03	k: 2612	n:2710000
Cons ci ratio: 1.217064e-01	ci left: 3.593646e-04	ci right 4.062894e-04	k: 1036	n:2710000
KS ci ratio: 1.934369e-02	ci left: 1.478327e-02	ci right 1.507238e-02	k: 40453	n:2710000
OTUD7A   2710000 perm   3041 sec   (891 perm/sec)   p_kst 1.492731e-02   p_cons 3.822878e-04   p_joint 9.638376e-04

Joint ci ratio: 7.660519e-02	ci left: 9.249151e-04	ci right 9.989480e-04	k: 2615	n:2720000
Cons ci ratio: 1.215308e-01	ci left: 3.591128e-04	ci right 4.059322e-04	k: 1039	n:2720000
KS ci ratio: 1.931010e-02	ci left: 1.478050e-02	ci right 1.506906e-02	k: 40594	n:2720000
OTUD7A   2720000 perm   3061 sec   (888 perm/sec)   p_kst 1.492426e-02   p_cons 3.819853e-04   p_joint 9.613971e-04

Joint ci ratio: 7.645918e-02	ci left: 9.251201e-04	ci right 9.990220e-04	k: 2625	n:2730000
Cons ci ratio: 1.211817e-01	ci left: 3.599285e-04	ci right 4.067097e-04	k: 1045	n:2730000
KS ci ratio: 1.927356e-02	ci left: 1.478250e-02	ci right 1.507054e-02	k: 40748	n:2730000
OTUD7A   2730000 perm   3082 sec   (886 perm/sec)   p_kst 1.492601e-02   p_cons 3.827839e-04   p_joint 9.615385e-04

Joint ci ratio: 7.625612e-02	ci left: 9.267557e-04	ci right 1.000583e-03	k: 2639	n:2740000
Cons ci ratio: 1.210660e-01	ci left: 3.593227e-04	ci right 4.059774e-04	k: 1047	n:2740000
KS ci ratio: 1.923484e-02	ci left: 1.478812e-02	ci right 1.507568e-02	k: 40912	n:2740000
OTUD7A   2740000 perm   3102 sec   (883 perm/sec)   p_kst 1.493139e-02   p_cons 3.821168e-04   p_joint 9.631387e-04

Joint ci ratio: 7.615526e-02	ci left: 9.258826e-04	ci right 9.995384e-04	k: 2646	n:2750000
Cons ci ratio: 1.210084e-01	ci left: 3.583687e-04	ci right 4.048758e-04	k: 1048	n:2750000
KS ci ratio: 1.919991e-02	ci left: 1.478826e-02	ci right 1.507531e-02	k: 41061	n:2750000
OTUD7A   2750000 perm   3123 sec   (881 perm/sec)   p_kst 1.493127e-02   p_cons 3.810909e-04   p_joint 9.621818e-04

Joint ci ratio: 7.595460e-02	ci left: 9.275040e-04	ci right 1.001086e-03	k: 2660	n:2760000
Cons ci ratio: 1.204925e-01	ci left: 3.602326e-04	ci right 4.067681e-04	k: 1057	n:2760000
KS ci ratio: 1.916375e-02	ci left: 1.479057e-02	ci right 1.507711e-02	k: 41216	n:2760000
OTUD7A   2760000 perm   3144 sec   (878 perm/sec)   p_kst 1.493333e-02   p_cons 3.829710e-04   p_joint 9.637681e-04

Joint ci ratio: 7.584071e-02	ci left: 9.269888e-04	ci right 1.000415e-03	k: 2668	n:2770000
Cons ci ratio: 1.202653e-01	ci left: 3.603327e-04	ci right 4.067871e-04	k: 1061	n:2770000
KS ci ratio: 1.912663e-02	ci left: 1.479466e-02	ci right 1.508072e-02	k: 41376	n:2770000
OTUD7A   2770000 perm   3164 sec   (875 perm/sec)   p_kst 1.493718e-02   p_cons 3.830325e-04   p_joint 9.631769e-04

Joint ci ratio: 7.576983e-02	ci left: 9.254188e-04	ci right 9.986487e-04	k: 2673	n:2780000
Cons ci ratio: 1.198709e-01	ci left: 3.614789e-04	ci right 4.079174e-04	k: 1068	n:2780000
KS ci ratio: 1.909789e-02	ci left: 1.478619e-02	ci right 1.507165e-02	k: 41501	n:2780000
OTUD7A   2780000 perm   3185 sec   (873 perm/sec)   p_kst 1.492842e-02   p_cons 3.841727e-04   p_joint 9.615108e-04

Joint ci ratio: 7.561444e-02	ci left: 9.259699e-04	ci right 9.990866e-04	k: 2684	n:2790000
Cons ci ratio: 1.193140e-01	ci left: 3.636603e-04	ci right 4.101467e-04	k: 1078	n:2790000
KS ci ratio: 1.906672e-02	ci left: 1.478171e-02	ci right 1.506661e-02	k: 41637	n:2790000
OTUD7A   2790000 perm   3206 sec   (870 perm/sec)   p_kst 1.492366e-02   p_cons 3.863799e-04   p_joint 9.620072e-04

Joint ci ratio: 7.544601e-02	ci left: 9.268677e-04	ci right 9.998850e-04	k: 2696	n:2800000
Cons ci ratio: 1.193140e-01	ci left: 3.623615e-04	ci right 4.086820e-04	k: 1078	n:2800000
KS ci ratio: 1.903154e-02	ci left: 1.478365e-02	ci right 1.506806e-02	k: 41791	n:2800000
OTUD7A   2800000 perm   3227 sec   (868 perm/sec)   p_kst 1.492536e-02   p_cons 3.850000e-04   p_joint 9.628571e-04

Joint ci ratio: 7.527869e-02	ci left: 9.277592e-04	ci right 1.000678e-03	k: 2708	n:2810000
Cons ci ratio: 1.190385e-01	ci left: 3.627983e-04	ci right 4.090599e-04	k: 1083	n:2810000
KS ci ratio: 1.899426e-02	ci left: 1.478913e-02	ci right 1.507308e-02	k: 41955	n:2810000
OTUD7A   2810000 perm   3248 sec   (865 perm/sec)   p_kst 1.493060e-02   p_cons 3.854093e-04   p_joint 9.637011e-04

Joint ci ratio: 7.518165e-02	ci left: 9.269048e-04	ci right 9.996581e-04	k: 2715	n:2820000
Cons ci ratio: 1.189289e-01	ci left: 3.621999e-04	ci right 4.083397e-04	k: 1085	n:2820000
KS ci ratio: 1.896222e-02	ci left: 1.478680e-02	ci right 1.507022e-02	k: 42097	n:2820000
OTUD7A   2820000 perm   3269 sec   (863 perm/sec)   p_kst 1.492801e-02   p_cons 3.847518e-04   p_joint 9.627660e-04

Joint ci ratio: 7.504362e-02	ci left: 9.270968e-04	ci right 9.997257e-04	k: 2725	n:2830000
Cons ci ratio: 1.186560e-01	ci left: 3.626343e-04	ci right 4.087161e-04	k: 1090	n:2830000
KS ci ratio: 1.893034e-02	ci left: 1.478449e-02	ci right 1.506739e-02	k: 42239	n:2830000
OTUD7A   2830000 perm   3290 sec   (860 perm/sec)   p_kst 1.492544e-02   p_cons 3.851590e-04   p_joint 9.628975e-04

Joint ci ratio: 7.501621e-02	ci left: 9.245233e-04	ci right 9.969230e-04	k: 2727	n:2840000
Cons ci ratio: 1.186018e-01	ci left: 3.616991e-04	ci right 4.076395e-04	k: 1091	n:2840000
KS ci ratio: 1.889252e-02	ci left: 1.479166e-02	ci right 1.507412e-02	k: 42408	n:2840000
OTUD7A   2840000 perm   3312 sec   (858 perm/sec)   p_kst 1.493239e-02   p_cons 3.841549e-04   p_joint 9.602113e-04

Joint ci ratio: 7.489278e-02	ci left: 9.243781e-04	ci right 9.966421e-04	k: 2736	n:2850000
Cons ci ratio: 1.184933e-01	ci left: 3.611109e-04	ci right 4.069317e-04	k: 1093	n:2850000
KS ci ratio: 1.885965e-02	ci left: 1.479144e-02	ci right 1.507340e-02	k: 42556	n:2850000
OTUD7A   2850000 perm   3333 sec   (855 perm/sec)   p_kst 1.493193e-02   p_cons 3.835088e-04   p_joint 9.600000e-04

Joint ci ratio: 7.470191e-02	ci left: 9.259496e-04	ci right 9.981439e-04	k: 2750	n:2860000
Cons ci ratio: 1.183312e-01	ci left: 3.608662e-04	ci right 4.065889e-04	k: 1096	n:2860000
KS ci ratio: 1.882515e-02	ci left: 1.479401e-02	ci right 1.507550e-02	k: 42712	n:2860000
OTUD7A   2860000 perm   3355 sec   (853 perm/sec)   p_kst 1.493427e-02   p_cons 3.832168e-04   p_joint 9.615385e-04

Joint ci ratio: 7.455299e-02	ci left: 9.264845e-04	ci right 9.985703e-04	k: 2761	n:2870000
Cons ci ratio: 1.182235e-01	ci left: 3.602851e-04	ci right 4.058897e-04	k: 1098	n:2870000
KS ci ratio: 1.878929e-02	ci left: 1.479899e-02	ci right 1.508003e-02	k: 42875	n:2870000
OTUD7A   2870000 perm   3376 sec   (850 perm/sec)   p_kst 1.493902e-02   p_cons 3.825784e-04   p_joint 9.620209e-04

Joint ci ratio: 7.460721e-02	ci left: 9.219045e-04	ci right 9.936884e-04	k: 2757	n:2880000
Cons ci ratio: 1.180625e-01	ci left: 3.600449e-04	ci right 4.055528e-04	k: 1101	n:2880000
KS ci ratio: 1.930328e-02	ci left: 1.398073e-02	ci right 1.425358e-02	k: 40656	n:2880000
OTUD7A   2880000 perm   3398 sec   (848 perm/sec)   p_kst 1.411667e-02   p_cons 3.822917e-04   p_joint 9.572917e-04

Joint ci ratio: 7.448579e-02	ci left: 9.217706e-04	ci right 9.934222e-04	k: 2766	n:2890000
Cons ci ratio: 1.178488e-01	ci left: 3.601424e-04	ci right 4.055744e-04	k: 1105	n:2890000
KS ci ratio: 1.926797e-02	ci left: 1.398367e-02	ci right 1.425606e-02	k: 40805	n:2890000
OTUD7A   2890000 perm   3420 sec   (845 perm/sec)   p_kst 1.411938e-02   p_cons 3.823529e-04   p_joint 9.570934e-04

Joint ci ratio: 7.431138e-02	ci left: 9.229915e-04	ci right 9.945628e-04	k: 2779	n:2900000
Cons ci ratio: 1.175833e-01	ci left: 3.605739e-04	ci right 4.059507e-04	k: 1110	n:2900000
KS ci ratio: 1.923930e-02	ci left: 1.397731e-02	ci right 1.424918e-02	k: 40927	n:2900000
OTUD7A   2900000 perm   3441 sec   (843 perm/sec)   p_kst 1.411276e-02   p_cons 3.827586e-04   p_joint 9.582759e-04

Joint ci ratio: 7.419139e-02	ci left: 9.228550e-04	ci right 9.942952e-04	k: 2788	n:2910000
Cons ci ratio: 1.174249e-01	ci left: 3.603354e-04	ci right 4.056169e-04	k: 1113	n:2910000
KS ci ratio: 1.920506e-02	ci left: 1.397921e-02	ci right 1.425062e-02	k: 41073	n:2910000
OTUD7A   2910000 perm   3463 sec   (840 perm/sec)   p_kst 1.411443e-02   p_cons 3.824742e-04   p_joint 9.580756e-04

Joint ci ratio: 7.404550e-02	ci left: 9.233919e-04	ci right 9.947270e-04	k: 2799	n:2920000
Cons ci ratio: 1.171099e-01	ci left: 3.610959e-04	ci right 4.063429e-04	k: 1119	n:2920000
KS ci ratio: 1.917077e-02	ci left: 1.398144e-02	ci right 1.425240e-02	k: 41220	n:2920000
OTUD7A   2920000 perm   3485 sec   (838 perm/sec)   p_kst 1.411644e-02   p_cons 3.832192e-04   p_joint 9.585616e-04

Joint ci ratio: 7.390046e-02	ci left: 9.239252e-04	ci right 9.951557e-04	k: 2810	n:2930000
Cons ci ratio: 1.169013e-01	ci left: 3.611887e-04	ci right 4.063612e-04	k: 1123	n:2930000
KS ci ratio: 1.913971e-02	ci left: 1.397923e-02	ci right 1.424971e-02	k: 41354	n:2930000
OTUD7A   2930000 perm   3507 sec   (835 perm/sec)   p_kst 1.411399e-02   p_cons 3.832765e-04   p_joint 9.590444e-04

Joint ci ratio: 7.374319e-02	ci left: 9.247889e-04	ci right 9.959278e-04	k: 2822	n:2940000
Cons ci ratio: 1.167457e-01	ci left: 3.609508e-04	ci right 4.060292e-04	k: 1126	n:2940000
KS ci ratio: 1.910413e-02	ci left: 1.398382e-02	ci right 1.425388e-02	k: 41508	n:2940000
OTUD7A   2940000 perm   3529 sec   (833 perm/sec)   p_kst 1.411837e-02   p_cons 3.829932e-04   p_joint 9.598639e-04

Joint ci ratio: 7.363895e-02	ci left: 9.243159e-04	ci right 9.953136e-04	k: 2830	n:2950000
Cons ci ratio: 1.165906e-01	ci left: 3.607145e-04	ci right 4.056994e-04	k: 1129	n:2950000
KS ci ratio: 1.907966e-02	ci left: 1.397251e-02	ci right 1.424200e-02	k: 41615	n:2950000
OTUD7A   2950000 perm   3551 sec   (831 perm/sec)   p_kst 1.410678e-02   p_cons 3.827119e-04   p_joint 9.593220e-04

Joint ci ratio: 7.349628e-02	ci left: 9.248411e-04	ci right 9.957356e-04	k: 2841	n:2960000
Cons ci ratio: 1.164362e-01	ci left: 3.604798e-04	ci right 4.053719e-04	k: 1132	n:2960000
KS ci ratio: 1.904789e-02	ci left: 1.397204e-02	ci right 1.424107e-02	k: 41754	n:2960000
OTUD7A   2960000 perm   3574 sec   (828 perm/sec)   p_kst 1.410608e-02   p_cons 3.824324e-04   p_joint 9.597973e-04

Joint ci ratio: 7.336731e-02	ci left: 9.250323e-04	ci right 9.958118e-04	k: 2851	n:2970000
Cons ci ratio: 1.162823e-01	ci left: 3.602468e-04	ci right 4.050465e-04	k: 1135	n:2970000
KS ci ratio: 1.901880e-02	ci left: 1.396789e-02	ci right 1.423642e-02	k: 41882	n:2970000
OTUD7A   2970000 perm   3596 sec   (826 perm/sec)   p_kst 1.410168e-02   p_cons 3.821549e-04   p_joint 9.599327e-04

Joint ci ratio: 7.321342e-02	ci left: 9.258813e-04	ci right 9.965707e-04	k: 2863	n:2980000
Cons ci ratio: 1.160782e-01	ci left: 3.603412e-04	ci right 4.050685e-04	k: 1139	n:2980000
KS ci ratio: 1.898962e-02	ci left: 1.396410e-02	ci right 1.423215e-02	k: 42011	n:2980000
OTUD7A   2980000 perm   3619 sec   (823 perm/sec)   p_kst 1.409765e-02   p_cons 3.822148e-04   p_joint 9.607383e-04

Joint ci ratio: 7.304778e-02	ci left: 9.270530e-04	ci right 9.976650e-04	k: 2876	n:2990000
Cons ci ratio: 1.158244e-01	ci left: 3.607598e-04	ci right 4.054345e-04	k: 1144	n:2990000
KS ci ratio: 1.896239e-02	ci left: 1.395767e-02	ci right 1.422521e-02	k: 42132	n:2990000
OTUD7A   2990000 perm   3641 sec   (821 perm/sec)   p_kst 1.409097e-02   p_cons 3.826087e-04   p_joint 9.618729e-04

Joint ci ratio: 7.290852e-02	ci left: 9.275626e-04	ci right 9.980730e-04	k: 2887	n:3000000
Cons ci ratio: 1.156730e-01	ci left: 3.605283e-04	ci right 4.051120e-04	k: 1147	n:3000000
KS ci ratio: 1.892756e-02	ci left: 1.396257e-02	ci right 1.422970e-02	k: 42287	n:3000000
OTUD7A   3000000 perm   3664 sec   (819 perm/sec)   p_kst 1.409567e-02   p_cons 3.823333e-04   p_joint 9.623333e-04

Joint ci ratio: 6.430046e-02	ci left: 1.193562e-03	ci right 1.273183e-03	k: 3711	n:3010000
Cons ci ratio: 1.154720e-01	ci left: 3.606210e-04	ci right 4.051334e-04	k: 1151	n:3010000
KS ci ratio: 1.930155e-02	ci left: 1.338746e-02	ci right 1.364870e-02	k: 40688	n:3010000
OTUD7A   3010000 perm   3687 sec   (816 perm/sec)   p_kst 1.351761e-02   p_cons 3.823920e-04   p_joint 1.232890e-03

Joint ci ratio: 6.419678e-02	ci left: 1.193520e-03	ci right 1.273004e-03	k: 3723	n:3020000
Cons ci ratio: 1.153219e-01	ci left: 3.603916e-04	ci right 4.048139e-04	k: 1154	n:3020000
KS ci ratio: 1.927320e-02	ci left: 1.338267e-02	ci right 1.364343e-02	k: 40808	n:3020000
OTUD7A   3020000 perm   3709 sec   (814 perm/sec)   p_kst 1.351258e-02   p_cons 3.821192e-04   p_joint 1.232781e-03

Joint ci ratio: 6.413658e-02	ci left: 1.191854e-03	ci right 1.271150e-03	k: 3730	n:3030000
Cons ci ratio: 1.150235e-01	ci left: 3.611254e-04	ci right 4.055151e-04	k: 1160	n:3030000
KS ci ratio: 1.924330e-02	ci left: 1.338021e-02	ci right 1.364052e-02	k: 40935	n:3030000
OTUD7A   3030000 perm   3732 sec   (812 perm/sec)   p_kst 1.350990e-02   p_cons 3.828383e-04   p_joint 1.231023e-03

Joint ci ratio: 6.971950e-02	ci left: 1.002592e-03	ci right 1.075338e-03	k: 3157	n:3040000
Cons ci ratio: 1.148752e-01	ci left: 3.608959e-04	ci right 4.051964e-04	k: 1163	n:3040000
KS ci ratio: 1.920691e-02	ci left: 1.338694e-02	ci right 1.364688e-02	k: 41090	n:3040000
OTUD7A   3040000 perm   3755 sec   (810 perm/sec)   p_kst 1.351645e-02   p_cons 3.825658e-04   p_joint 1.038487e-03

Joint ci ratio: 7.016586e-02	ci left: 9.864191e-04	ci right 1.058468e-03	k: 3117	n:3050000
Cons ci ratio: 1.145802e-01	ci left: 3.616234e-04	ci right 4.058915e-04	k: 1169	n:3050000
KS ci ratio: 1.917379e-02	ci left: 1.338939e-02	ci right 1.364892e-02	k: 41232	n:3050000
OTUD7A   3050000 perm   3778 sec   (807 perm/sec)   p_kst 1.351869e-02   p_cons 3.832787e-04   p_joint 1.021967e-03

Joint ci ratio: 7.000882e-02	ci left: 9.876905e-04	ci right 1.059664e-03	k: 3131	n:3060000
Cons ci ratio: 1.143849e-01	ci left: 3.617114e-04	ci right 4.059097e-04	k: 1173	n:3060000
KS ci ratio: 1.914365e-02	ci left: 1.338791e-02	ci right 1.364700e-02	k: 41362	n:3060000
OTUD7A   3060000 perm   3801 sec   (805 perm/sec)   p_kst 1.351699e-02   p_cons 3.833333e-04   p_joint 1.023203e-03

Joint ci ratio: 6.986395e-02	ci left: 9.886338e-04	ci right 1.060521e-03	k: 3144	n:3070000
Cons ci ratio: 1.142390e-01	ci left: 3.614825e-04	ci right 4.055926e-04	k: 1176	n:3070000
KS ci ratio: 1.910432e-02	ci left: 1.339941e-02	ci right 1.365819e-02	k: 41532	n:3070000
OTUD7A   3070000 perm   3824 sec   (803 perm/sec)   p_kst 1.352834e-02   p_cons 3.830619e-04   p_joint 1.024104e-03

Joint ci ratio: 7.059816e-02	ci left: 9.646902e-04	ci right 1.035604e-03	k: 3079	n:3080000
Cons ci ratio: 1.139008e-01	ci left: 3.625167e-04	ci right 4.066133e-04	k: 1183	n:3080000
KS ci ratio: 1.907033e-02	ci left: 1.340373e-02	ci right 1.366212e-02	k: 41680	n:3080000
OTUD7A   3080000 perm   3847 sec   (801 perm/sec)   p_kst 1.353247e-02   p_cons 3.840909e-04   p_joint 9.996753e-04

Joint ci ratio: 7.050668e-02	ci left: 9.641115e-04	ci right 1.034887e-03	k: 3087	n:3090000
Cons ci ratio: 1.138047e-01	ci left: 3.619723e-04	ci right 4.059631e-04	k: 1185	n:3090000
KS ci ratio: 1.904091e-02	ci left: 1.340190e-02	ci right 1.365985e-02	k: 41809	n:3090000
OTUD7A   3090000 perm   3871 sec   (798 perm/sec)   p_kst 1.353042e-02   p_cons 3.834951e-04   p_joint 9.990291e-04

Joint ci ratio: 7.040416e-02	ci left: 9.638536e-04	ci right 1.034503e-03	k: 3096	n:3100000
Cons ci ratio: 1.135656e-01	ci left: 3.623717e-04	ci right 4.063123e-04	k: 1190	n:3100000
KS ci ratio: 1.901093e-02	ci left: 1.340105e-02	ci right 1.365857e-02	k: 41941	n:3100000
OTUD7A   3100000 perm   3894 sec   (796 perm/sec)   p_kst 1.352935e-02   p_cons 3.838710e-04   p_joint 9.987097e-04

Joint ci ratio: 7.027945e-02	ci left: 9.642291e-04	ci right 1.034776e-03	k: 3107	n:3110000
Cons ci ratio: 1.134704e-01	ci left: 3.618314e-04	ci right 4.056671e-04	k: 1192	n:3110000
KS ci ratio: 1.898224e-02	ci left: 1.339860e-02	ci right 1.365569e-02	k: 42068	n:3110000
OTUD7A   3110000 perm   3917 sec   (794 perm/sec)   p_kst 1.352669e-02   p_cons 3.832797e-04   p_joint 9.990354e-04

Joint ci ratio: 7.014415e-02	ci left: 9.649173e-04	ci right 1.035373e-03	k: 3119	n:3120000
Cons ci ratio: 1.131861e-01	ci left: 3.625402e-04	ci right 4.063445e-04	k: 1198	n:3120000
KS ci ratio: 1.895118e-02	ci left: 1.339967e-02	ci right 1.365636e-02	k: 42206	n:3120000
OTUD7A   3120000 perm   3940 sec   (792 perm/sec)   p_kst 1.352756e-02   p_cons 3.839744e-04   p_joint 9.996795e-04

Joint ci ratio: 7.004321e-02	ci left: 9.646595e-04	ci right 1.034991e-03	k: 3128	n:3130000
Cons ci ratio: 1.129039e-01	ci left: 3.632447e-04	ci right 4.070174e-04	k: 1204	n:3130000
KS ci ratio: 1.892049e-02	ci left: 1.340043e-02	ci right 1.365670e-02	k: 42343	n:3130000
OTUD7A   3130000 perm   3964 sec   (790 perm/sec)   p_kst 1.352812e-02   p_cons 3.846645e-04   p_joint 9.993610e-04

Joint ci ratio: 6.984252e-02	ci left: 9.672196e-04	ci right 1.037527e-03	k: 3146	n:3140000
Cons ci ratio: 1.126703e-01	ci left: 3.636353e-04	ci right 4.073584e-04	k: 1209	n:3140000
KS ci ratio: 1.889220e-02	ci left: 1.339800e-02	ci right 1.365385e-02	k: 42470	n:3140000
OTUD7A   3140000 perm   3987 sec   (788 perm/sec)   p_kst 1.352548e-02   p_cons 3.850318e-04   p_joint 1.001911e-03

Joint ci ratio: 6.974287e-02	ci left: 9.669564e-04	ci right 1.037141e-03	k: 3155	n:3150000
Cons ci ratio: 1.123458e-01	ci left: 3.646406e-04	ci right 4.083499e-04	k: 1216	n:3150000
KS ci ratio: 1.886494e-02	ci left: 1.339433e-02	ci right 1.364974e-02	k: 42593	n:3150000
OTUD7A   3150000 perm   4010 sec   (785 perm/sec)   p_kst 1.352159e-02   p_cons 3.860317e-04   p_joint 1.001587e-03

Joint ci ratio: 6.964365e-02	ci left: 9.666948e-04	ci right 1.036756e-03	k: 3164	n:3160000
Cons ci ratio: 1.119783e-01	ci left: 3.659473e-04	ci right 4.096603e-04	k: 1224	n:3160000
KS ci ratio: 1.883534e-02	ci left: 1.339415e-02	ci right 1.364914e-02	k: 42727	n:3160000
OTUD7A   3160000 perm   4034 sec   (783 perm/sec)   p_kst 1.352120e-02   p_cons 3.873418e-04   p_joint 1.001266e-03

Joint ci ratio: 6.942454e-02	ci left: 9.698448e-04	ci right 1.039905e-03	k: 3184	n:3170000
Cons ci ratio: 1.117959e-01	ci left: 3.660194e-04	ci right 4.096651e-04	k: 1228	n:3170000
KS ci ratio: 1.880610e-02	ci left: 1.339366e-02	ci right 1.364824e-02	k: 42860	n:3170000
OTUD7A   3170000 perm   4058 sec   (781 perm/sec)   p_kst 1.352050e-02   p_cons 3.873817e-04   p_joint 1.004416e-03

Joint ci ratio: 6.930495e-02	ci left: 9.701941e-04	ci right 1.040154e-03	k: 3195	n:3180000
Cons ci ratio: 1.116597e-01	ci left: 3.657854e-04	ci right 4.093466e-04	k: 1231	n:3180000
KS ci ratio: 1.877080e-02	ci left: 1.340193e-02	ci right 1.365619e-02	k: 43021	n:3180000
OTUD7A   3180000 perm   4081 sec   (779 perm/sec)   p_kst 1.352862e-02   p_cons 3.871069e-04   p_joint 1.004717e-03

Joint ci ratio: 6.918598e-02	ci left: 9.705413e-04	ci right 1.040401e-03	k: 3206	n:3190000
Cons ci ratio: 1.115240e-01	ci left: 3.655530e-04	ci right 4.090301e-04	k: 1234	n:3190000
KS ci ratio: 1.873944e-02	ci left: 1.340485e-02	ci right 1.365873e-02	k: 43165	n:3190000
OTUD7A   3190000 perm   4105 sec   (777 perm/sec)   p_kst 1.353135e-02   p_cons 3.868339e-04   p_joint 1.005016e-03

Joint ci ratio: 6.906762e-02	ci left: 9.708865e-04	ci right 1.040647e-03	k: 3217	n:3200000
Cons ci ratio: 1.113888e-01	ci left: 3.653220e-04	ci right 4.087155e-04	k: 1237	n:3200000
KS ci ratio: 1.870671e-02	ci left: 1.340993e-02	ci right 1.366346e-02	k: 43316	n:3200000
OTUD7A   3200000 perm   4129 sec   (775 perm/sec)   p_kst 1.353625e-02   p_cons 3.865625e-04   p_joint 1.005312e-03

Joint ci ratio: 6.932699e-02	ci left: 9.605145e-04	ci right 1.029799e-03	k: 3193	n:3210000
Cons ci ratio: 1.112541e-01	ci left: 3.650925e-04	ci right 4.084028e-04	k: 1240	n:3210000
KS ci ratio: 1.867305e-02	ci left: 1.341652e-02	ci right 1.366972e-02	k: 43472	n:3210000
OTUD7A   3210000 perm   4153 sec   (773 perm/sec)   p_kst 1.354268e-02   p_cons 3.862928e-04   p_joint 9.947040e-04

Joint ci ratio: 6.926201e-02	ci left: 9.593626e-04	ci right 1.028496e-03	k: 3199	n:3220000
Cons ci ratio: 1.112094e-01	ci left: 3.642605e-04	ci right 4.074537e-04	k: 1241	n:3220000
KS ci ratio: 1.864694e-02	ci left: 1.341257e-02	ci right 1.366533e-02	k: 43594	n:3220000
OTUD7A   3220000 perm   4176 sec   (771 perm/sec)   p_kst 1.353851e-02   p_cons 3.854037e-04   p_joint 9.934783e-04

Joint ci ratio: 6.911095e-02	ci left: 9.606518e-04	ci right 1.029722e-03	k: 3213	n:3230000
Cons ci ratio: 1.110307e-01	ci left: 3.643368e-04	ci right 4.074650e-04	k: 1245	n:3230000
KS ci ratio: 1.861706e-02	ci left: 1.341418e-02	ci right 1.366657e-02	k: 43734	n:3230000
OTUD7A   3230000 perm   4200 sec   (769 perm/sec)   p_kst 1.353994e-02   p_cons 3.854489e-04   p_joint 9.947368e-04

Joint ci ratio: 6.900369e-02	ci left: 9.607200e-04	ci right 1.029683e-03	k: 3223	n:3240000
Cons ci ratio: 1.108529e-01	ci left: 3.644126e-04	ci right 4.074762e-04	k: 1249	n:3240000
KS ci ratio: 1.858603e-02	ci left: 1.341763e-02	ci right 1.366966e-02	k: 43880	n:3240000
OTUD7A   3240000 perm   4224 sec   (767 perm/sec)   p_kst 1.354321e-02   p_cons 3.854938e-04   p_joint 9.947531e-04

Joint ci ratio: 6.887560e-02	ci left: 9.613926e-04	ci right 1.030271e-03	k: 3235	n:3250000
Cons ci ratio: 1.105878e-01	ci left: 3.650863e-04	ci right 4.081197e-04	k: 1255	n:3250000
KS ci ratio: 1.856008e-02	ci left: 1.341402e-02	ci right 1.366562e-02	k: 44003	n:3250000
OTUD7A   3250000 perm   4248 sec   (765 perm/sec)   p_kst 1.353938e-02   p_cons 3.861538e-04   p_joint 9.953846e-04

Joint ci ratio: 6.878004e-02	ci left: 9.611567e-04	ci right 1.029919e-03	k: 3244	n:3260000
Cons ci ratio: 1.105879e-01	ci left: 3.639664e-04	ci right 4.068678e-04	k: 1255	n:3260000
KS ci ratio: 1.853316e-02	ci left: 1.341195e-02	ci right 1.366314e-02	k: 44131	n:3260000
OTUD7A   3260000 perm   4272 sec   (763 perm/sec)   p_kst 1.353712e-02   p_cons 3.849693e-04   p_joint 9.950920e-04

Joint ci ratio: 6.884388e-02	ci left: 9.564140e-04	ci right 1.024903e-03	k: 3238	n:3270000
Cons ci ratio: 1.103246e-01	ci left: 3.646376e-04	ci right 4.075091e-04	k: 1261	n:3270000
KS ci ratio: 1.850425e-02	ci left: 1.341294e-02	ci right 1.366376e-02	k: 44269	n:3270000
OTUD7A   3270000 perm   4296 sec   (761 perm/sec)   p_kst 1.353792e-02   p_cons 3.856269e-04   p_joint 9.902141e-04

Joint ci ratio: 6.875904e-02	ci left: 9.558952e-04	ci right 1.024259e-03	k: 3246	n:3280000
Cons ci ratio: 1.101938e-01	ci left: 3.644153e-04	ci right 4.072065e-04	k: 1264	n:3280000
KS ci ratio: 1.847778e-02	ci left: 1.341059e-02	ci right 1.366100e-02	k: 44396	n:3280000
OTUD7A   3280000 perm   4320 sec   (759 perm/sec)   p_kst 1.353537e-02   p_cons 3.853659e-04   p_joint 9.896341e-04

Joint ci ratio: 6.861124e-02	ci left: 9.571720e-04	ci right 1.025474e-03	k: 3260	n:3290000
Cons ci ratio: 1.101503e-01	ci left: 3.636032e-04	ci right 4.062811e-04	k: 1265	n:3290000
KS ci ratio: 1.845060e-02	ci left: 1.340946e-02	ci right 1.365948e-02	k: 44527	n:3290000
OTUD7A   3290000 perm   4345 sec   (757 perm/sec)   p_kst 1.353404e-02   p_cons 3.844985e-04   p_joint 9.908815e-04

Joint ci ratio: 6.850628e-02	ci left: 9.572498e-04	ci right 1.025449e-03	k: 3270	n:3300000
Cons ci ratio: 1.100200e-01	ci left: 3.633854e-04	ci right 4.059841e-04	k: 1268	n:3300000
KS ci ratio: 1.842332e-02	ci left: 1.340864e-02	ci right 1.365827e-02	k: 44659	n:3300000
OTUD7A   3300000 perm   4370 sec   (755 perm/sec)   p_kst 1.353303e-02   p_cons 3.842424e-04   p_joint 9.909091e-04

Joint ci ratio: 6.838094e-02	ci left: 9.579212e-04	ci right 1.026038e-03	k: 3282	n:3310000
Cons ci ratio: 1.100201e-01	ci left: 3.622876e-04	ci right 4.047576e-04	k: 1268	n:3310000
KS ci ratio: 1.839574e-02	ci left: 1.340843e-02	ci right 1.365768e-02	k: 44793	n:3310000
OTUD7A   3310000 perm   4395 sec   (753 perm/sec)   p_kst 1.353263e-02   p_cons 3.830816e-04   p_joint 9.915408e-04

Joint ci ratio: 6.840190e-02	ci left: 9.544437e-04	ci right 1.022335e-03	k: 3280	n:3320000
Cons ci ratio: 1.098039e-01	ci left: 3.626610e-04	ci right 4.050858e-04	k: 1273	n:3320000
KS ci ratio: 1.836892e-02	ci left: 1.340732e-02	ci right 1.365618e-02	k: 44924	n:3320000
OTUD7A   3320000 perm   4421 sec   (751 perm/sec)   p_kst 1.353133e-02   p_cons 3.834337e-04   p_joint 9.879518e-04

Joint ci ratio: 6.827714e-02	ci left: 9.551196e-04	ci right 1.022930e-03	k: 3292	n:3330000
Cons ci ratio: 1.096749e-01	ci left: 3.624481e-04	ci right 4.047950e-04	k: 1276	n:3330000
KS ci ratio: 1.833994e-02	ci left: 1.340951e-02	ci right 1.365801e-02	k: 45066	n:3330000
OTUD7A   3330000 perm   4446 sec   (749 perm/sec)   p_kst 1.353333e-02   p_cons 3.831832e-04   p_joint 9.885886e-04

Joint ci ratio: 6.820471e-02	ci left: 9.543199e-04	ci right 1.021999e-03	k: 3299	n:3340000
Cons ci ratio: 1.094181e-01	ci left: 3.631101e-04	ci right 4.054286e-04	k: 1282	n:3340000
KS ci ratio: 1.831356e-02	ci left: 1.340810e-02	ci right 1.365622e-02	k: 45196	n:3340000
OTUD7A   3340000 perm   4471 sec   (747 perm/sec)   p_kst 1.353174e-02   p_cons 3.838323e-04   p_joint 9.877246e-04

Joint ci ratio: 6.808102e-02	ci left: 9.549923e-04	ci right 1.022591e-03	k: 3311	n:3350000
Cons ci ratio: 1.092904e-01	ci left: 3.628972e-04	ci right 4.051384e-04	k: 1285	n:3350000
KS ci ratio: 1.828525e-02	ci left: 1.340968e-02	ci right 1.365743e-02	k: 45336	n:3350000
OTUD7A   3350000 perm   4496 sec   (745 perm/sec)   p_kst 1.353313e-02   p_cons 3.835821e-04   p_joint 9.883582e-04

Joint ci ratio: 6.795800e-02	ci left: 9.556608e-04	ci right 1.023180e-03	k: 3323	n:3360000
Cons ci ratio: 1.092056e-01	ci left: 3.623961e-04	ci right 4.045441e-04	k: 1287	n:3360000
KS ci ratio: 1.825768e-02	ci left: 1.341036e-02	ci right 1.365775e-02	k: 45473	n:3360000
OTUD7A   3360000 perm   4521 sec   (743 perm/sec)   p_kst 1.353363e-02   p_cons 3.830357e-04   p_joint 9.889881e-04

Joint ci ratio: 6.783564e-02	ci left: 9.563254e-04	ci right 1.023765e-03	k: 3335	n:3370000
Cons ci ratio: 1.090786e-01	ci left: 3.621867e-04	ci right 4.042582e-04	k: 1290	n:3370000
KS ci ratio: 1.822983e-02	ci left: 1.341162e-02	ci right 1.365865e-02	k: 45612	n:3370000
OTUD7A   3370000 perm   4547 sec   (741 perm/sec)   p_kst 1.353472e-02   p_cons 3.827893e-04   p_joint 9.896142e-04

Joint ci ratio: 6.777476e-02	ci left: 9.552410e-04	ci right 1.022542e-03	k: 3341	n:3380000
Cons ci ratio: 1.089100e-01	ci left: 3.622663e-04	ci right 4.042779e-04	k: 1294	n:3380000
KS ci ratio: 1.820654e-02	ci left: 1.340640e-02	ci right 1.365302e-02	k: 45729	n:3380000
OTUD7A   3380000 perm   4572 sec   (739 perm/sec)   p_kst 1.352929e-02   p_cons 3.828402e-04   p_joint 9.884615e-04

Joint ci ratio: 6.768369e-02	ci left: 9.550331e-04	ci right 1.022225e-03	k: 3350	n:3390000
Cons ci ratio: 1.087422e-01	ci left: 3.623455e-04	ci right 4.042973e-04	k: 1298	n:3390000
KS ci ratio: 1.818013e-02	ci left: 1.340591e-02	ci right 1.365215e-02	k: 45862	n:3390000
OTUD7A   3390000 perm   4597 sec   (737 perm/sec)   p_kst 1.352861e-02   p_cons 3.828909e-04   p_joint 9.882006e-04

Joint ci ratio: 6.756281e-02	ci left: 9.556939e-04	ci right 1.022808e-03	k: 3362	n:3400000
Cons ci ratio: 1.087004e-01	ci left: 3.615659e-04	ci right 4.034104e-04	k: 1299	n:3400000
KS ci ratio: 1.815303e-02	ci left: 1.340659e-02	ci right 1.365248e-02	k: 45999	n:3400000
OTUD7A   3400000 perm   4623 sec   (735 perm/sec)   p_kst 1.352912e-02   p_cons 3.820588e-04   p_joint 9.888235e-04

Joint ci ratio: 6.742257e-02	ci left: 9.569276e-04	ci right 1.023983e-03	k: 3376	n:3410000
Cons ci ratio: 1.085752e-01	ci left: 3.613614e-04	ci right 4.031310e-04	k: 1302	n:3410000
KS ci ratio: 1.812864e-02	ci left: 1.340347e-02	ci right 1.364897e-02	k: 46123	n:3410000
OTUD7A   3410000 perm   4648 sec   (734 perm/sec)   p_kst 1.352581e-02   p_cons 3.818182e-04   p_joint 9.900293e-04

Joint ci ratio: 6.735283e-02	ci left: 9.561419e-04	ci right 1.023070e-03	k: 3383	n:3420000
Cons ci ratio: 1.082847e-01	ci left: 3.622961e-04	ci right 4.040545e-04	k: 1309	n:3420000
KS ci ratio: 1.809900e-02	ci left: 1.340823e-02	ci right 1.365341e-02	k: 46274	n:3420000
OTUD7A   3420000 perm   4673 sec   (732 perm/sec)   p_kst 1.353041e-02   p_cons 3.827485e-04   p_joint 9.891813e-04

Joint ci ratio: 6.724362e-02	ci left: 9.565073e-04	ci right 1.023348e-03	k: 3394	n:3430000
Cons ci ratio: 1.080376e-01	ci left: 3.629418e-04	ci right 4.046731e-04	k: 1315	n:3430000
KS ci ratio: 1.807068e-02	ci left: 1.341122e-02	ci right 1.365607e-02	k: 46419	n:3430000
OTUD7A   3430000 perm   4698 sec   (730 perm/sec)   p_kst 1.353324e-02   p_cons 3.833819e-04   p_joint 9.895044e-04

Joint ci ratio: 6.717443e-02	ci left: 9.557274e-04	ci right 1.022443e-03	k: 3401	n:3440000
Cons ci ratio: 1.078737e-01	ci left: 3.630181e-04	ci right 4.046909e-04	k: 1319	n:3440000
KS ci ratio: 1.804486e-02	ci left: 1.341073e-02	ci right 1.365521e-02	k: 46552	n:3440000
OTUD7A   3440000 perm   4724 sec   (728 perm/sec)   p_kst 1.353256e-02   p_cons 3.834302e-04   p_joint 9.886628e-04

Joint ci ratio: 6.710546e-02	ci left: 9.549521e-04	ci right 1.021542e-03	k: 3408	n:3450000
Cons ci ratio: 1.078738e-01	ci left: 3.619659e-04	ci right 4.035179e-04	k: 1319	n:3450000
KS ci ratio: 1.802090e-02	ci left: 1.340763e-02	ci right 1.365173e-02	k: 46676	n:3450000
OTUD7A   3450000 perm   4749 sec   (726 perm/sec)   p_kst 1.352928e-02   p_cons 3.823188e-04   p_joint 9.878261e-04

Joint ci ratio: 6.692891e-02	ci left: 9.573073e-04	ci right 1.023879e-03	k: 3426	n:3460000
Cons ci ratio: 1.077514e-01	ci left: 3.617634e-04	ci right 4.032421e-04	k: 1322	n:3460000
KS ci ratio: 1.799704e-02	ci left: 1.340456e-02	ci right 1.364828e-02	k: 46800	n:3460000
OTUD7A   3460000 perm   4775 sec   (725 perm/sec)   p_kst 1.352601e-02   p_cons 3.820809e-04   p_joint 9.901734e-04

Joint ci ratio: 6.469067e-02	ci left: 1.022860e-03	ci right 1.091522e-03	k: 3667	n:3470000
Cons ci ratio: 1.075889e-01	ci left: 3.618426e-04	ci right 4.032637e-04	k: 1326	n:3470000
KS ci ratio: 1.797037e-02	ci left: 1.340581e-02	ci right 1.364918e-02	k: 46939	n:3470000
OTUD7A   3470000 perm   4800 sec   (723 perm/sec)   p_kst 1.352709e-02   p_cons 3.821326e-04   p_joint 1.056772e-03

Joint ci ratio: 6.454999e-02	ci left: 1.024444e-03	ci right 1.093058e-03	k: 3683	n:3480000
Cons ci ratio: 1.074271e-01	ci left: 3.619213e-04	ci right 4.032853e-04	k: 1330	n:3480000
KS ci ratio: 1.794014e-02	ci left: 1.341249e-02	ci right 1.365557e-02	k: 47097	n:3480000
OTUD7A   3480000 perm   4825 sec   (721 perm/sec)   p_kst 1.353362e-02   p_cons 3.821839e-04   p_joint 1.058333e-03

Joint ci ratio: 6.443638e-02	ci left: 1.025173e-03	ci right 1.093711e-03	k: 3696	n:3490000
Cons ci ratio: 1.072259e-01	ci left: 3.622785e-04	ci right 4.036008e-04	k: 1335	n:3490000
KS ci ratio: 1.791160e-02	ci left: 1.341684e-02	ci right 1.365961e-02	k: 47247	n:3490000
OTUD7A   3490000 perm   4850 sec   (720 perm/sec)   p_kst 1.353782e-02   p_cons 3.825215e-04   p_joint 1.059026e-03

Joint ci ratio: 6.438420e-02	ci left: 1.023931e-03	ci right 1.092328e-03	k: 3702	n:3500000
Cons ci ratio: 1.071057e-01	ci left: 3.620776e-04	ci right 4.033278e-04	k: 1338	n:3500000
KS ci ratio: 1.788760e-02	ci left: 1.341463e-02	ci right 1.365703e-02	k: 47374	n:3500000
OTUD7A   3500000 perm   4876 sec   (718 perm/sec)   p_kst 1.353543e-02   p_cons 3.822857e-04   p_joint 1.057714e-03

Joint ci ratio: 6.429744e-02	ci left: 1.023817e-03	ci right 1.092110e-03	k: 3712	n:3510000
Cons ci ratio: 1.069859e-01	ci left: 3.618778e-04	ci right 4.030563e-04	k: 1341	n:3510000
KS ci ratio: 1.786160e-02	ci left: 1.341555e-02	ci right 1.365761e-02	k: 47512	n:3510000
OTUD7A   3510000 perm   4902 sec   (716 perm/sec)   p_kst 1.353618e-02   p_cons 3.820513e-04   p_joint 1.057550e-03

Joint ci ratio: 6.421967e-02	ci left: 1.023424e-03	ci right 1.091606e-03	k: 3721	n:3520000
Cons ci ratio: 1.068269e-01	ci left: 3.619558e-04	ci right 4.030780e-04	k: 1345	n:3520000
KS ci ratio: 1.783590e-02	ci left: 1.341619e-02	ci right 1.365791e-02	k: 47649	n:3520000
OTUD7A   3520000 perm   4928 sec   (714 perm/sec)   p_kst 1.353665e-02   p_cons 3.821023e-04   p_joint 1.057102e-03

Joint ci ratio: 6.414218e-02	ci left: 1.023033e-03	ci right 1.091104e-03	k: 3730	n:3530000
Cons ci ratio: 1.066685e-01	ci left: 3.620333e-04	ci right 4.030995e-04	k: 1349	n:3530000
KS ci ratio: 1.780691e-02	ci left: 1.342190e-02	ci right 1.366332e-02	k: 47804	n:3530000
OTUD7A   3530000 perm   4954 sec   (713 perm/sec)   p_kst 1.354221e-02   p_cons 3.821530e-04   p_joint 1.056657e-03

Joint ci ratio: 6.407355e-02	ci left: 1.022367e-03	ci right 1.090318e-03	k: 3738	n:3540000
Cons ci ratio: 1.065502e-01	ci left: 3.618354e-04	ci right 4.028308e-04	k: 1352	n:3540000
KS ci ratio: 1.778088e-02	ci left: 1.342335e-02	ci right 1.366445e-02	k: 47944	n:3540000
OTUD7A   3540000 perm   4980 sec   (711 perm/sec)   p_kst 1.354350e-02   p_cons 3.819209e-04   p_joint 1.055932e-03

Joint ci ratio: 6.414238e-02	ci left: 1.017270e-03	ci right 1.084957e-03	k: 3730	n:3550000
Cons ci ratio: 1.064322e-01	ci left: 3.616387e-04	ci right 4.025637e-04	k: 1355	n:3550000
KS ci ratio: 1.775833e-02	ci left: 1.341975e-02	ci right 1.366048e-02	k: 48066	n:3550000
OTUD7A   3550000 perm   5005 sec   (709 perm/sec)   p_kst 1.353972e-02   p_cons 3.816901e-04   p_joint 1.050704e-03

Joint ci ratio: 6.404803e-02	ci left: 1.017453e-03	ci right 1.085049e-03	k: 3741	n:3560000
Cons ci ratio: 1.062756e-01	ci left: 3.617166e-04	ci right 4.025863e-04	k: 1359	n:3560000
KS ci ratio: 1.773103e-02	ci left: 1.342345e-02	ci right 1.366386e-02	k: 48214	n:3560000
OTUD7A   3560000 perm   5032 sec   (708 perm/sec)   p_kst 1.354326e-02   p_cons 3.817416e-04   p_joint 1.050843e-03

Joint ci ratio: 6.392852e-02	ci left: 1.018461e-03	ci right 1.085994e-03	k: 3755	n:3570000
Cons ci ratio: 1.060031e-01	ci left: 3.626121e-04	ci right 4.034715e-04	k: 1366	n:3570000
KS ci ratio: 1.770663e-02	ci left: 1.342294e-02	ci right 1.366301e-02	k: 48347	n:3570000
OTUD7A   3570000 perm   5058 sec   (706 perm/sec)   p_kst 1.354258e-02   p_cons 3.826331e-04   p_joint 1.051821e-03

Joint ci ratio: 6.388606e-02	ci left: 1.016991e-03	ci right 1.084379e-03	k: 3760	n:3580000
Cons ci ratio: 1.058870e-01	ci left: 3.624150e-04	ci right 4.032046e-04	k: 1369	n:3580000
KS ci ratio: 1.768362e-02	ci left: 1.342048e-02	ci right 1.366019e-02	k: 48473	n:3580000
OTUD7A   3580000 perm   5084 sec   (704 perm/sec)   p_kst 1.353994e-02   p_cons 3.824022e-04   p_joint 1.050279e-03

Joint ci ratio: 6.378437e-02	ci left: 1.017447e-03	ci right 1.084754e-03	k: 3772	n:3590000
Cons ci ratio: 1.056943e-01	ci left: 3.627614e-04	ci right 4.035111e-04	k: 1374	n:3590000
KS ci ratio: 1.765942e-02	ci left: 1.341998e-02	ci right 1.365936e-02	k: 48606	n:3590000
OTUD7A   3590000 perm   5110 sec   (703 perm/sec)   p_kst 1.353928e-02   p_cons 3.827298e-04   p_joint 1.050696e-03

Joint ci ratio: 6.369159e-02	ci left: 1.017628e-03	ci right 1.084845e-03	k: 3783	n:3600000
Cons ci ratio: 1.055792e-01	ci left: 3.625651e-04	ci right 4.032456e-04	k: 1377	n:3600000
KS ci ratio: 1.763330e-02	ci left: 1.342253e-02	ci right 1.366159e-02	k: 48750	n:3600000
OTUD7A   3600000 perm   5136 sec   (701 perm/sec)   p_kst 1.354167e-02   p_cons 3.825000e-04   p_joint 1.050833e-03

Joint ci ratio: 6.358244e-02	ci left: 1.018353e-03	ci right 1.085499e-03	k: 3796	n:3610000
Cons ci ratio: 1.053500e-01	ci left: 3.631790e-04	ci right 4.038344e-04	k: 1383	n:3610000
KS ci ratio: 1.761003e-02	ci left: 1.342092e-02	ci right 1.365964e-02	k: 48879	n:3610000
OTUD7A   3610000 perm   5162 sec   (699 perm/sec)   p_kst 1.353989e-02   p_cons 3.831025e-04   p_joint 1.051524e-03

Joint ci ratio: 6.352394e-02	ci left: 1.017443e-03	ci right 1.084465e-03	k: 3803	n:3620000
Cons ci ratio: 1.051602e-01	ci left: 3.635206e-04	ci right 4.041364e-04	k: 1388	n:3620000
KS ci ratio: 1.758667e-02	ci left: 1.341960e-02	ci right 1.365797e-02	k: 49009	n:3620000
OTUD7A   3620000 perm   5189 sec   (698 perm/sec)   p_kst 1.353840e-02   p_cons 3.834254e-04   p_joint 1.050552e-03

Joint ci ratio: 6.344894e-02	ci left: 1.017080e-03	ci right 1.083996e-03	k: 3812	n:3630000
Cons ci ratio: 1.050469e-01	ci left: 3.633239e-04	ci right 4.038713e-04	k: 1391	n:3630000
KS ci ratio: 1.756214e-02	ci left: 1.342021e-02	ci right 1.365825e-02	k: 49146	n:3630000
OTUD7A   3630000 perm   5215 sec   (696 perm/sec)   p_kst 1.353884e-02   p_cons 3.831956e-04   p_joint 1.050138e-03

Joint ci ratio: 6.337421e-02	ci left: 1.016719e-03	ci right 1.083529e-03	k: 3821	n:3640000
Cons ci ratio: 1.049339e-01	ci left: 3.631282e-04	ci right 4.036075e-04	k: 1394	n:3640000
KS ci ratio: 1.753573e-02	ci left: 1.342382e-02	ci right 1.366157e-02	k: 49294	n:3640000
OTUD7A   3640000 perm   5242 sec   (694 perm/sec)   p_kst 1.354231e-02   p_cons 3.829670e-04   p_joint 1.049725e-03

Joint ci ratio: 6.329147e-02	ci left: 1.016630e-03	ci right 1.083344e-03	k: 3831	n:3650000
Cons ci ratio: 1.048212e-01	ci left: 3.629337e-04	ci right 4.033452e-04	k: 1397	n:3650000
KS ci ratio: 1.751176e-02	ci left: 1.342387e-02	ci right 1.366129e-02	k: 49429	n:3650000
OTUD7A   3650000 perm   5268 sec   (693 perm/sec)   p_kst 1.354219e-02   p_cons 3.827397e-04   p_joint 1.049589e-03

Joint ci ratio: 6.320082e-02	ci left: 1.016810e-03	ci right 1.083437e-03	k: 3842	n:3660000
Cons ci ratio: 1.046343e-01	ci left: 3.632725e-04	ci right 4.036451e-04	k: 1402	n:3660000
KS ci ratio: 1.748665e-02	ci left: 1.342582e-02	ci right 1.366293e-02	k: 49571	n:3660000
OTUD7A   3660000 perm   5295 sec   (691 perm/sec)   p_kst 1.354399e-02   p_cons 3.830601e-04   p_joint 1.049727e-03

Joint ci ratio: 6.311875e-02	ci left: 1.016721e-03	ci right 1.083253e-03	k: 3852	n:3670000
Cons ci ratio: 1.044854e-01	ci left: 3.633440e-04	ci right 4.036636e-04	k: 1406	n:3670000
KS ci ratio: 1.746520e-02	ci left: 1.342233e-02	ci right 1.365909e-02	k: 49693	n:3670000
OTUD7A   3670000 perm   5321 sec   (690 perm/sec)   p_kst 1.354033e-02   p_cons 3.831063e-04   p_joint 1.049591e-03

Joint ci ratio: 6.344107e-02	ci left: 1.003528e-03	ci right 1.069544e-03	k: 3813	n:3680000
Cons ci ratio: 1.043742e-01	ci left: 3.631506e-04	ci right 4.034032e-04	k: 1409	n:3680000
KS ci ratio: 1.744419e-02	ci left: 1.341833e-02	ci right 1.365472e-02	k: 49813	n:3680000
OTUD7A   3680000 perm   5348 sec   (688 perm/sec)   p_kst 1.353614e-02   p_cons 3.828804e-04   p_joint 1.036141e-03

Joint ci ratio: 6.375991e-02	ci left: 9.906738e-04	ci right 1.056184e-03	k: 3775	n:3690000
Cons ci ratio: 1.043743e-01	ci left: 3.621664e-04	ci right 4.023100e-04	k: 1409	n:3690000
KS ci ratio: 1.741830e-02	ci left: 1.342190e-02	ci right 1.365800e-02	k: 49961	n:3690000
OTUD7A   3690000 perm   5375 sec   (686 perm/sec)   p_kst 1.353957e-02   p_cons 3.818428e-04   p_joint 1.023035e-03

Joint ci ratio: 6.368407e-02	ci left: 9.903900e-04	ci right 1.055800e-03	k: 3784	n:3700000
Cons ci ratio: 1.041897e-01	ci left: 3.625037e-04	ci right 4.026093e-04	k: 1414	n:3700000
KS ci ratio: 1.739288e-02	ci left: 1.342491e-02	ci right 1.366072e-02	k: 50107	n:3700000
OTUD7A   3700000 perm   5402 sec   (685 perm/sec)   p_kst 1.354243e-02   p_cons 3.821622e-04   p_joint 1.022703e-03

Joint ci ratio: 6.438613e-02	ci left: 9.659716e-04	ci right 1.030499e-03	k: 3702	n:3710000
Cons ci ratio: 1.040427e-01	ci left: 3.625767e-04	ci right 4.026303e-04	k: 1418	n:3710000
KS ci ratio: 1.736775e-02	ci left: 1.342764e-02	ci right 1.366315e-02	k: 50252	n:3710000
OTUD7A   3710000 perm   5429 sec   (683 perm/sec)   p_kst 1.354501e-02   p_cons 3.822102e-04   p_joint 9.978437e-04

Joint ci ratio: 6.429070e-02	ci left: 9.662843e-04	ci right 1.030733e-03	k: 3713	n:3720000
Cons ci ratio: 1.038964e-01	ci left: 3.626494e-04	ci right 4.026512e-04	k: 1422	n:3720000
KS ci ratio: 1.734517e-02	ci left: 1.342660e-02	ci right 1.366179e-02	k: 50383	n:3720000
OTUD7A   3720000 perm   5456 sec   (682 perm/sec)   p_kst 1.354382e-02   p_cons 3.822581e-04   p_joint 9.981183e-04

Joint ci ratio: 6.417845e-02	ci left: 9.671230e-04	ci right 1.031511e-03	k: 3726	n:3730000
Cons ci ratio: 1.036780e-01	ci left: 3.632439e-04	ci right 4.032220e-04	k: 1428	n:3730000
KS ci ratio: 1.732354e-02	ci left: 1.342424e-02	ci right 1.365909e-02	k: 50509	n:3730000
OTUD7A   3730000 perm   5484 sec   (680 perm/sec)   p_kst 1.354129e-02   p_cons 3.828418e-04   p_joint 9.989276e-04

Joint ci ratio: 6.406679e-02	ci left: 9.679573e-04	ci right 1.032285e-03	k: 3739	n:3740000
Cons ci ratio: 1.036056e-01	ci left: 3.627936e-04	ci right 4.026925e-04	k: 1430	n:3740000
KS ci ratio: 1.730096e-02	ci left: 1.342349e-02	ci right 1.365802e-02	k: 50641	n:3740000
OTUD7A   3740000 perm   5511 sec   (679 perm/sec)   p_kst 1.354037e-02   p_cons 3.823529e-04   p_joint 9.997326e-04

Joint ci ratio: 6.395571e-02	ci left: 9.687873e-04	ci right 1.033054e-03	k: 3752	n:3750000
Cons ci ratio: 1.034250e-01	ci left: 3.631250e-04	ci right 4.029865e-04	k: 1435	n:3750000
KS ci ratio: 1.727846e-02	ci left: 1.342274e-02	ci right 1.365695e-02	k: 50773	n:3750000
OTUD7A   3750000 perm   5538 sec   (677 perm/sec)   p_kst 1.353947e-02   p_cons 3.826667e-04   p_joint 1.000533e-03

Joint ci ratio: 6.389617e-02	ci left: 9.680427e-04	ci right 1.032198e-03	k: 3759	n:3760000
Cons ci ratio: 1.033172e-01	ci left: 3.629364e-04	ci right 4.027332e-04	k: 1438	n:3760000
KS ci ratio: 1.725502e-02	ci left: 1.342358e-02	ci right 1.365748e-02	k: 50911	n:3760000
OTUD7A   3760000 perm   5566 sec   (676 perm/sec)   p_kst 1.354016e-02   p_cons 3.824468e-04   p_joint 9.997340e-04

Joint ci ratio: 6.378597e-02	ci left: 9.688682e-04	ci right 1.032963e-03	k: 3772	n:3770000
Cons ci ratio: 1.030311e-01	ci left: 3.640410e-04	ci right 4.038417e-04	k: 1446	n:3770000
KS ci ratio: 1.723168e-02	ci left: 1.342443e-02	ci right 1.365802e-02	k: 51049	n:3770000
OTUD7A   3770000 perm   5593 sec   (674 perm/sec)   p_kst 1.354085e-02   p_cons 3.835544e-04   p_joint 1.000531e-03

Joint ci ratio: 6.376914e-02	ci left: 9.668257e-04	ci right 1.030768e-03	k: 3774	n:3780000
Cons ci ratio: 1.029245e-01	ci left: 3.638512e-04	ci right 4.035874e-04	k: 1449	n:3780000
KS ci ratio: 1.720877e-02	ci left: 1.342473e-02	ci right 1.365802e-02	k: 51185	n:3780000
OTUD7A   3780000 perm   5620 sec   (673 perm/sec)   p_kst 1.354101e-02   p_cons 3.833333e-04   p_joint 9.984127e-04

Joint ci ratio: 5.531756e-02	ci left: 1.286610e-03	ci right 1.360065e-03	k: 5014	n:3790000
Cons ci ratio: 1.028182e-01	ci left: 3.636623e-04	ci right 4.033344e-04	k: 1452	n:3790000
KS ci ratio: 1.718392e-02	ci left: 1.342820e-02	ci right 1.366120e-02	k: 51333	n:3790000
OTUD7A   3790000 perm   5648 sec   (671 perm/sec)   p_kst 1.354433e-02   p_cons 3.831135e-04   p_joint 1.322955e-03

Joint ci ratio: 5.563515e-02	ci left: 1.268432e-03	ci right 1.341278e-03	k: 4957	n:3800000
Cons ci ratio: 1.026769e-01	ci left: 3.637309e-04	ci right 4.033527e-04	k: 1456	n:3800000
KS ci ratio: 1.715917e-02	ci left: 1.343164e-02	ci right 1.366437e-02	k: 51481	n:3800000
OTUD7A   3800000 perm   5676 sec   (669 perm/sec)   p_kst 1.354763e-02   p_cons 3.831579e-04   p_joint 1.304474e-03

Joint ci ratio: 5.557915e-02	ci left: 1.267691e-03	ci right 1.340419e-03	k: 4967	n:3810000
Cons ci ratio: 1.025012e-01	ci left: 3.640549e-04	ci right 4.036400e-04	k: 1461	n:3810000
KS ci ratio: 1.713655e-02	ci left: 1.343193e-02	ci right 1.366435e-02	k: 51617	n:3810000
OTUD7A   3810000 perm   5704 sec   (668 perm/sec)   p_kst 1.354777e-02   p_cons 3.834646e-04   p_joint 1.303675e-03

Joint ci ratio: 5.552332e-02	ci left: 1.266954e-03	ci right 1.339564e-03	k: 4977	n:3820000
Cons ci ratio: 1.023962e-01	ci left: 3.638671e-04	ci right 4.033888e-04	k: 1464	n:3820000
KS ci ratio: 1.711888e-02	ci left: 1.342466e-02	ci right 1.365671e-02	k: 51724	n:3820000
OTUD7A   3820000 perm   5732 sec   (666 perm/sec)   p_kst 1.354031e-02   p_cons 3.832461e-04   p_joint 1.302880e-03

Joint ci ratio: 5.649185e-02	ci left: 1.220138e-03	ci right 1.291325e-03	k: 4808	n:3830000
Cons ci ratio: 1.022567e-01	ci left: 3.639347e-04	ci right 4.034067e-04	k: 1468	n:3830000
KS ci ratio: 1.709826e-02	ci left: 1.342210e-02	ci right 1.365383e-02	k: 51849	n:3830000
OTUD7A   3830000 perm   5759 sec   (665 perm/sec)   p_kst 1.353760e-02   p_cons 3.832898e-04   p_joint 1.255352e-03

Joint ci ratio: 5.645082e-02	ci left: 1.218758e-03	ci right 1.289810e-03	k: 4815	n:3840000
Cons ci ratio: 1.021872e-01	ci left: 3.634945e-04	ci right 4.028903e-04	k: 1470	n:3840000
KS ci ratio: 1.707721e-02	ci left: 1.342034e-02	ci right 1.365175e-02	k: 51977	n:3840000
OTUD7A   3840000 perm   5787 sec   (664 perm/sec)   p_kst 1.353568e-02   p_cons 3.828125e-04   p_joint 1.253906e-03

Joint ci ratio: 5.661002e-02	ci left: 1.208678e-03	ci right 1.279348e-03	k: 4788	n:3850000
Cons ci ratio: 1.020832e-01	ci left: 3.633096e-04	ci right 4.026430e-04	k: 1473	n:3850000
KS ci ratio: 1.705192e-02	ci left: 1.342531e-02	ci right 1.365646e-02	k: 52131	n:3850000
OTUD7A   3850000 perm   5815 sec   (662 perm/sec)   p_kst 1.354052e-02   p_cons 3.825974e-04   p_joint 1.243636e-03

Joint ci ratio: 5.653923e-02	ci left: 1.208611e-03	ci right 1.279187e-03	k: 4800	n:3860000
Cons ci ratio: 1.019794e-01	ci left: 3.631258e-04	ci right 4.023969e-04	k: 1476	n:3860000
KS ci ratio: 1.703105e-02	ci left: 1.342355e-02	ci right 1.365438e-02	k: 52259	n:3860000
OTUD7A   3860000 perm   5844 sec   (661 perm/sec)   p_kst 1.353860e-02   p_cons 3.823834e-04   p_joint 1.243523e-03

Joint ci ratio: 5.648634e-02	ci left: 1.207781e-03	ci right 1.278240e-03	k: 4809	n:3870000
Cons ci ratio: 1.017729e-01	ci left: 3.636984e-04	ci right 4.029470e-04	k: 1482	n:3870000
KS ci ratio: 1.700893e-02	ci left: 1.342386e-02	ci right 1.365439e-02	k: 52395	n:3870000
OTUD7A   3870000 perm   5872 sec   (659 perm/sec)   p_kst 1.353876e-02   p_cons 3.829457e-04   p_joint 1.242636e-03

Joint ci ratio: 5.867679e-02	ci left: 1.115251e-03	ci right 1.182920e-03	k: 4457	n:3880000
Cons ci ratio: 1.016359e-01	ci left: 3.637657e-04	ci right 4.029656e-04	k: 1486	n:3880000
KS ci ratio: 1.698427e-02	ci left: 1.342827e-02	ci right 1.365854e-02	k: 52547	n:3880000
OTUD7A   3880000 perm   5900 sec   (658 perm/sec)   p_kst 1.354304e-02   p_cons 3.829897e-04   p_joint 1.148711e-03

Joint ci ratio: 5.857174e-02	ci left: 1.116437e-03	ci right 1.184052e-03	k: 4473	n:3890000
Cons ci ratio: 1.014655e-01	ci left: 3.640833e-04	ci right 4.032477e-04	k: 1491	n:3890000
KS ci ratio: 1.696364e-02	ci left: 1.342651e-02	ci right 1.365647e-02	k: 52675	n:3890000
OTUD7A   3890000 perm   5928 sec   (656 perm/sec)   p_kst 1.354113e-02   p_cons 3.832905e-04   p_joint 1.149871e-03

Joint ci ratio: 5.865721e-02	ci left: 1.110289e-03	ci right 1.177634e-03	k: 4460	n:3900000
Cons ci ratio: 1.011608e-01	ci left: 3.653990e-04	ci right 4.045798e-04	k: 1500	n:3900000
KS ci ratio: 1.694341e-02	ci left: 1.342426e-02	ci right 1.365390e-02	k: 52801	n:3900000
OTUD7A   3900000 perm   5957 sec   (655 perm/sec)   p_kst 1.353872e-02   p_cons 3.846154e-04   p_joint 1.143590e-03

Joint ci ratio: 5.859158e-02	ci left: 1.109970e-03	ci right 1.177217e-03	k: 4470	n:3910000
Cons ci ratio: 1.010598e-01	ci left: 3.652123e-04	ci right 4.043317e-04	k: 1503	n:3910000
KS ci ratio: 1.692438e-02	ci left: 1.342023e-02	ci right 1.364955e-02	k: 52920	n:3910000
OTUD7A   3910000 perm   5985 sec   (653 perm/sec)   p_kst 1.353453e-02   p_cons 3.843990e-04   p_joint 1.143223e-03

Joint ci ratio: 5.853926e-02	ci left: 1.109149e-03	ci right 1.176285e-03	k: 4478	n:3920000
Cons ci ratio: 1.009257e-01	ci left: 3.652753e-04	ci right 4.043465e-04	k: 1507	n:3920000
KS ci ratio: 1.690672e-02	ci left: 1.341419e-02	ci right 1.364316e-02	k: 53031	n:3920000
OTUD7A   3920000 perm   6014 sec   (652 perm/sec)   p_kst 1.352832e-02   p_cons 3.844388e-04   p_joint 1.142347e-03

Joint ci ratio: 5.848055e-02	ci left: 1.108583e-03	ci right 1.175616e-03	k: 4487	n:3930000
Cons ci ratio: 1.008589e-01	ci left: 3.648419e-04	ci right 4.038393e-04	k: 1509	n:3930000
KS ci ratio: 1.688476e-02	ci left: 1.341502e-02	ci right 1.364371e-02	k: 53169	n:3930000
OTUD7A   3930000 perm   6042 sec   (650 perm/sec)   p_kst 1.352901e-02   p_cons 3.839695e-04   p_joint 1.141730e-03

Joint ci ratio: 5.842202e-02	ci left: 1.108021e-03	ci right 1.174949e-03	k: 4496	n:3940000
Cons ci ratio: 1.007255e-01	ci left: 3.649055e-04	ci right 4.038552e-04	k: 1513	n:3940000
KS ci ratio: 1.686497e-02	ci left: 1.341257e-02	ci right 1.364094e-02	k: 53294	n:3940000
OTUD7A   3940000 perm   6071 sec   (649 perm/sec)   p_kst 1.352640e-02   p_cons 3.840102e-04   p_joint 1.141117e-03

Joint ci ratio: 5.832480e-02	ci left: 1.108958e-03	ci right 1.175828e-03	k: 4511	n:3950000
Cons ci ratio: 1.004274e-01	ci left: 3.662029e-04	ci right 4.051685e-04	k: 1522	n:3950000
KS ci ratio: 1.684636e-02	ci left: 1.340836e-02	ci right 1.363641e-02	k: 53412	n:3950000
OTUD7A   3950000 perm   6099 sec   (648 perm/sec)   p_kst 1.352203e-02   p_cons 3.853165e-04   p_joint 1.142025e-03

Joint ci ratio: 5.824739e-02	ci left: 1.109143e-03	ci right 1.175933e-03	k: 4523	n:3960000
Cons ci ratio: 1.002958e-01	ci left: 3.662629e-04	ci right 4.051808e-04	k: 1526	n:3960000
KS ci ratio: 1.682655e-02	ci left: 1.340618e-02	ci right 1.363392e-02	k: 53538	n:3960000
OTUD7A   3960000 perm   6128 sec   (646 perm/sec)   p_kst 1.351970e-02   p_cons 3.853535e-04   p_joint 1.142172e-03

Joint ci ratio: 5.817671e-02	ci left: 1.109080e-03	ci right 1.175782e-03	k: 4534	n:3970000
Cons ci ratio: 1.000993e-01	ci left: 3.668138e-04	ci right 4.057094e-04	k: 1532	n:3970000
KS ci ratio: 1.680331e-02	ci left: 1.340954e-02	ci right 1.363702e-02	k: 53686	n:3970000
OTUD7A   3970000 perm   6157 sec   (645 perm/sec)   p_kst 1.352292e-02   p_cons 3.858942e-04   p_joint 1.142065e-03

Joint ci ratio: 5.810629e-02	ci left: 1.109017e-03	ci right 1.175632e-03	k: 4545	n:3980000
Cons ci ratio: 1.000015e-01	ci left: 3.666270e-04	ci right 4.054626e-04	k: 1535	n:3980000
KS ci ratio: 1.677938e-02	ci left: 1.341413e-02	ci right 1.364136e-02	k: 53839	n:3980000
OTUD7A   3980000 perm   6186 sec   (643 perm/sec)   p_kst 1.352739e-02   p_cons 3.856784e-04   p_joint 1.141960e-03

Joint ci ratio: 5.804887e-02	ci left: 1.108460e-03	ci right 1.174974e-03	k: 4554	n:3990000
Cons ci ratio: 9.993650e-02	ci left: 3.661969e-04	ci right 4.049602e-04	k: 1537	n:3990000
KS ci ratio: 1.676169e-02	ci left: 1.340896e-02	ci right 1.363586e-02	k: 53953	n:3990000
OTUD7A   3990000 perm   6215 sec   (642 perm/sec)   p_kst 1.352206e-02   p_cons 3.852130e-04   p_joint 1.141353e-03

Outputting figure to mutsig2_images.part000000000124/OTUD7A.6_2825_3990000_0.013522_0.00038521_0.0011414.png
                gene_name: OTUD7A
               theta_stop: 0.100 
                    nperm: 3990000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.00039 
      ci_cons_bounds_left: 0.00037 
     ci_cons_bounds_right: 0.00040 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 27 percent done.
ORC5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
ORC5L   10000 perm   2 sec   (6433 perm/sec)   p_kst 9.755000e-01   p_cons 2.290000e-01   p_joint 6.777000e-01

Outputting figure to mutsig2_images.part000000000124/ORC5L.5_1462_10000_0.9755_0.229_0.6777.png
                gene_name: ORC5L
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
OSMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
Cons ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
KS ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
OSMR   10000 perm   2 sec   (5649 perm/sec)   p_kst 6.130000e-02   p_cons 4.629000e-01   p_joint 1.362000e-01

Joint ci ratio: 6.520432e-02	ci left: 1.480366e-01	ci right 1.580645e-01	k: 3060	n:20000
Cons ci ratio: 3.061670e-02	ci left: 4.434873e-01	ci right 4.573271e-01	k: 9008	n:20000
KS ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
OSMR   20000 perm   4 sec   (5127 perm/sec)   p_kst 6.540000e-02   p_cons 4.504000e-01   p_joint 1.530000e-01

Joint ci ratio: 6.230456e-02	ci left: 1.129231e-01	ci right 1.202180e-01	k: 3496	n:30000
Cons ci ratio: 2.505138e-02	ci left: 4.437263e-01	ci right 4.550169e-01	k: 13481	n:30000
KS ci ratio: 8.394088e-02	ci left: 6.491509e-02	ci right 7.063563e-02	k: 2032	n:30000
OSMR   30000 perm   6 sec   (4935 perm/sec)   p_kst 6.773333e-02   p_cons 4.493667e-01   p_joint 1.165333e-01

Outputting figure to mutsig2_images.part000000000124/OSMR.5_3046_30000_0.067733_0.44937_0.11653.png
                gene_name: OSMR
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
OSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
Cons ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
OSR2   10000 perm   1 sec   (6801 perm/sec)   p_kst 2.446000e-01   p_cons 9.190000e-01   p_joint 4.019000e-01

Outputting figure to mutsig2_images.part000000000124/OSR2.5_951_10000_0.2446_0.919_0.4019.png
                gene_name: OSR2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
OTC
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.407096e-02	ci left: 5.598265e-01	ci right 5.793330e-01	k: 5696	n:10000
Cons ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
OTC   10000 perm   2 sec   (6642 perm/sec)   p_kst 3.305000e-01   p_cons 4.502000e-01   p_joint 5.696000e-01

Outputting figure to mutsig2_images.part000000000124/OTC.4_1105_10000_0.3305_0.4502_0.5696.png
                gene_name: OTC
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
OTOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
OTOL1   10000 perm   2 sec   (6379 perm/sec)   p_kst 9.149000e-01   p_cons 5.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTOL1.5_1448_10000_0.9149_0.5535_1.png
                gene_name: OTOL1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
OVCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
KS ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
OVCH2   10000 perm   2 sec   (6345 perm/sec)   p_kst 4.860000e-02   p_cons 2.598000e-01   p_joint 8.890000e-02

Joint ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
Cons ci ratio: 4.512488e-02	ci left: 2.677277e-01	ci right 2.801381e-01	k: 5478	n:20000
KS ci ratio: 1.199386e-01	ci left: 4.765147e-02	ci right 5.377999e-02	k: 1013	n:20000
OVCH2   20000 perm   3 sec   (5719 perm/sec)   p_kst 5.065000e-02   p_cons 2.739000e-01   p_joint 6.230000e-02

Joint ci ratio: 7.667880e-02	ci left: 7.705243e-02	ci right 8.322917e-02	k: 2403	n:30000
Cons ci ratio: 3.693567e-02	ci left: 2.678980e-01	ci right 2.780127e-01	k: 8188	n:30000
KS ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
OVCH2   30000 perm   5 sec   (5471 perm/sec)   p_kst 5.106667e-02   p_cons 2.729333e-01   p_joint 8.010000e-02

Outputting figure to mutsig2_images.part000000000124/OVCH2.5_1754_30000_0.051067_0.27293_0.0801.png
                gene_name: OVCH2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 38 percent done.
OXSM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
KS ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
OXSM   10000 perm   1 sec   (6698 perm/sec)   p_kst 2.383000e-01   p_cons 5.221000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000124/OXSM.5_1388_10000_0.2383_0.5221_0.4014.png
                gene_name: OXSM
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
OR9Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.449905e-02	ci left: 7.101782e-01	ci right 7.278940e-01	k: 7191	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
OR9Q1   10000 perm   2 sec   (6094 perm/sec)   p_kst 4.923000e-01   p_cons 8.300000e-01   p_joint 7.191000e-01

Outputting figure to mutsig2_images.part000000000124/OR9Q1.4_937_10000_0.4923_0.83_0.7191.png
                gene_name: OR9Q1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 42 percent done.
OR9Q2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
Cons ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
KS ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
OR9Q2   10000 perm   1 sec   (6950 perm/sec)   p_kst 1.586000e-01   p_cons 6.037000e-01   p_joint 2.617000e-01

Outputting figure to mutsig2_images.part000000000124/OR9Q2.4_949_10000_0.1586_0.6037_0.2617.png
                gene_name: OR9Q2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 44 percent done.
ORC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
Cons ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
ORC1L   10000 perm   2 sec   (5890 perm/sec)   p_kst 5.986000e-01   p_cons 2.258000e-01   p_joint 5.067000e-01

Outputting figure to mutsig2_images.part000000000124/ORC1L.4_2650_10000_0.5986_0.2258_0.5067.png
                gene_name: ORC1L
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 45 percent done.
ORC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
Cons ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
KS ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
ORC2L   10000 perm   2 sec   (6181 perm/sec)   p_kst 2.728000e-01   p_cons 6.529000e-01   p_joint 6.004000e-01

Outputting figure to mutsig2_images.part000000000124/ORC2L.4_1798_10000_0.2728_0.6529_0.6004.png
                gene_name: ORC2L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 47 percent done.
OSBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
OSBP   10000 perm   2 sec   (5920 perm/sec)   p_kst 7.699000e-01   p_cons 1.951000e-01   p_joint 5.714000e-01

Outputting figure to mutsig2_images.part000000000124/OSBP.4_2480_10000_0.7699_0.1951_0.5714.png
                gene_name: OSBP
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 49 percent done.
OTUD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
Cons ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
KS ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
OTUD5   10000 perm   2 sec   (6263 perm/sec)   p_kst 2.401000e-01   p_cons 3.081000e-01   p_joint 3.365000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD5.4_1752_10000_0.2401_0.3081_0.3365.png
                gene_name: OTUD5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 51 percent done.
OTUD6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
OTUD6A   10000 perm   2 sec   (6597 perm/sec)   p_kst 9.501000e-01   p_cons 9.500000e-02   p_joint 1.866000e-01

Joint ci ratio: 5.212347e-02	ci left: 2.146712e-01	ci right 2.262102e-01	k: 4408	n:20000
Cons ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
KS ci ratio: 6.394994e-03	ci left: 9.463742e-01	ci right 9.524942e-01	k: 18990	n:20000
OTUD6A   20000 perm   3 sec   (5846 perm/sec)   p_kst 9.495000e-01   p_cons 9.320000e-02   p_joint 2.204000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD6A.4_871_20000_0.9495_0.0932_0.2204.png
                gene_name: OTUD6A
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 53 percent done.
OXCT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
Cons ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
KS ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
OXCT1   10000 perm   2 sec   (6166 perm/sec)   p_kst 4.222000e-01   p_cons 2.444000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000124/OXCT1.4_1631_10000_0.4222_0.2444_0.3244.png
                gene_name: OXCT1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
OXGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
OXGR1   10000 perm   2 sec   (6600 perm/sec)   p_kst 5.044000e-01   p_cons 7.110000e-02   p_joint 2.458000e-01

Joint ci ratio: 6.714503e-02	ci left: 1.406893e-01	ci right 1.505140e-01	k: 2911	n:20000
Cons ci ratio: 9.678552e-02	ci left: 7.211979e-02	ci right 7.950409e-02	k: 1515	n:20000
KS ci ratio: 2.831606e-02	ci left: 4.823490e-01	ci right 4.962541e-01	k: 9786	n:20000
OXGR1   20000 perm   3 sec   (5978 perm/sec)   p_kst 4.893000e-01   p_cons 7.575000e-02   p_joint 1.455500e-01

Outputting figure to mutsig2_images.part000000000124/OXGR1.4_1018_20000_0.4893_0.07575_0.14555.png
                gene_name: OXGR1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
OXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
OXR1   10000 perm   2 sec   (5887 perm/sec)   p_kst 5.190000e-01   p_cons 1.205000e-01   p_joint 3.906000e-01

Joint ci ratio: 4.154288e-02	ci left: 3.016050e-01	ci right 3.144508e-01	k: 6160	n:20000
Cons ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
KS ci ratio: 2.649888e-02	ci left: 5.154996e-01	ci right 5.293938e-01	k: 10449	n:20000
OXR1   20000 perm   4 sec   (5337 perm/sec)   p_kst 5.224500e-01   p_cons 1.219000e-01   p_joint 3.080000e-01

Outputting figure to mutsig2_images.part000000000124/OXR1.4_2804_20000_0.52245_0.1219_0.308.png
                gene_name: OXR1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
P2RX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
Cons ci ratio: 9.000262e-03	ci left: 9.455455e-01	ci right 9.541901e-01	k: 9500	n:10000
KS ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
P2RX2   10000 perm   2 sec   (6155 perm/sec)   p_kst 5.200000e-01   p_cons 9.500000e-01   p_joint 6.767000e-01

Outputting figure to mutsig2_images.part000000000124/P2RX2.4_1534_10000_0.52_0.95_0.6767.png
                gene_name: P2RX2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 60 percent done.
ORM1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
KS ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
ORM1   10000 perm   1 sec   (7962 perm/sec)   p_kst 4.005000e-01   p_cons 8.503000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/ORM1.2_630_10000_0.4005_0.8503_1.png
                gene_name: ORM1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
OSBPL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
Cons ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
KS ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
OSBPL11   10000 perm   2 sec   (6182 perm/sec)   p_kst 9.644000e-01   p_cons 4.458000e-01   p_joint 8.182000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL11.3_2296_10000_0.9644_0.4458_0.8182.png
                gene_name: OSBPL11
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 64 percent done.
OSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
KS ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
OSTN   10000 perm   1 sec   (7392 perm/sec)   p_kst 7.669000e-01   p_cons 6.868000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSTN.3_412_10000_0.7669_0.6868_1.png
                gene_name: OSTN
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
OTOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
KS ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
OTOP2   10000 perm   1 sec   (6785 perm/sec)   p_kst 8.214000e-01   p_cons 5.549000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTOP2.3_1713_10000_0.8214_0.5549_1.png
                gene_name: OTOP2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
OTOP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 2.001624e-02	ci left: 7.851271e-01	ci right 8.011018e-01	k: 7932	n:10000
OTOP3   10000 perm   1 sec   (6703 perm/sec)   p_kst 7.932000e-01   p_cons 3.452000e-01   p_joint 6.238000e-01

Outputting figure to mutsig2_images.part000000000124/OTOP3.3_1818_10000_0.7932_0.3452_0.6238.png
                gene_name: OTOP3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 69 percent done.
OTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
Cons ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
KS ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
OTX1   10000 perm   1 sec   (6887 perm/sec)   p_kst 8.363000e-01   p_cons 3.247000e-01   p_joint 6.798000e-01

Outputting figure to mutsig2_images.part000000000124/OTX1.3_1077_10000_0.8363_0.3247_0.6798.png
                gene_name: OTX1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 71 percent done.
OVOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.342625e-02	ci left: 4.391176e-01	ci right 4.587122e-01	k: 4489	n:10000
Cons ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
OVOL1   10000 perm   1 sec   (7824 perm/sec)   p_kst 1.793000e-01   p_cons 7.143000e-01   p_joint 4.489000e-01

Outputting figure to mutsig2_images.part000000000124/OVOL1.3_820_10000_0.1793_0.7143_0.4489.png
                gene_name: OVOL1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
OVOL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
KS ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
OVOL2   10000 perm   1 sec   (7003 perm/sec)   p_kst 3.165000e-01   p_cons 7.028000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000124/OVOL2.3_844_10000_0.3165_0.7028_0.3929.png
                gene_name: OVOL2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 75 percent done.
P2RX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
KS ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
P2RX3   10000 perm   1 sec   (7065 perm/sec)   p_kst 8.896000e-01   p_cons 8.359000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/P2RX3.3_1242_10000_0.8896_0.8359_1.png
                gene_name: P2RX3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
OS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
OS9   10000 perm   1 sec   (6732 perm/sec)   p_kst 9.547000e-01   p_cons 1.582000e-01   p_joint 7.310000e-01

Outputting figure to mutsig2_images.part000000000124/OS9.2_2064_10000_0.9547_0.1582_0.731.png
                gene_name: OS9
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 78 percent done.
OSBPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
OSBPL5   10000 perm   2 sec   (6493 perm/sec)   p_kst 3.213000e-01   p_cons 6.120000e-02   p_joint 3.313000e-01

Joint ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 4.052271e-02	ci left: 3.122438e-01	ci right 3.252089e-01	k: 6374	n:20000
OSBPL5   20000 perm   3 sec   (5810 perm/sec)   p_kst 3.187000e-01   p_cons 6.240000e-02   p_joint 1.269000e-01

Joint ci ratio: 4.844180e-02	ci left: 1.748087e-01	ci right 1.835202e-01	k: 5374	n:30000
Cons ci ratio: 8.835844e-02	ci left: 5.883996e-02	ci right 6.431200e-02	k: 1846	n:30000
KS ci ratio: 3.301191e-02	ci left: 3.144237e-01	ci right 3.250112e-01	k: 9591	n:30000
OSBPL5   30000 perm   5 sec   (5539 perm/sec)   p_kst 3.197000e-01   p_cons 6.153333e-02   p_joint 1.791333e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL5.2_2724_30000_0.3197_0.061533_0.17913.png
                gene_name: OSBPL5
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 80 percent done.
OSBPL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
Cons ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
KS ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
OSBPL9   10000 perm   1 sec   (6783 perm/sec)   p_kst 1.306000e-01   p_cons 5.656000e-01   p_joint 2.506000e-01

Joint ci ratio: 2.347495e-02	ci left: 5.754284e-01	ci right 5.891476e-01	k: 11646	n:20000
Cons ci ratio: 2.421140e-02	ci left: 5.602990e-01	ci right 5.740815e-01	k: 11344	n:20000
KS ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
OSBPL9   20000 perm   3 sec   (6094 perm/sec)   p_kst 1.310000e-01   p_cons 5.672000e-01   p_joint 5.823000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL9.2_2411_20000_0.131_0.5672_0.5823.png
                gene_name: OSBPL9
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 82 percent done.
OSCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
OSCP1   10000 perm   1 sec   (7472 perm/sec)   p_kst 2.458000e-01   p_cons 1.945000e-01   p_joint 5.989000e-01

Outputting figure to mutsig2_images.part000000000124/OSCP1.2_1340_10000_0.2458_0.1945_0.5989.png
                gene_name: OSCP1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 84 percent done.
OSGEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
Cons ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
OSGEP   10000 perm   1 sec   (7295 perm/sec)   p_kst 9.900000e-03   p_cons 2.320000e-02   p_joint 4.100000e-03

Joint ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
Cons ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
KS ci ratio: 2.717025e-01	ci left: 8.900643e-03	ci right 1.174443e-02	k: 205	n:20000
OSGEP   20000 perm   3 sec   (6454 perm/sec)   p_kst 1.025000e-02   p_cons 2.370000e-02   p_joint 3.900000e-03

Joint ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
Cons ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
KS ci ratio: 2.152558e-01	ci left: 9.755930e-03	ci right 1.214020e-02	k: 327	n:30000
OSGEP   30000 perm   5 sec   (6121 perm/sec)   p_kst 1.090000e-02   p_cons 2.243333e-02   p_joint 2.866667e-03

Joint ci ratio: 3.543541e-01	ci left: 2.510680e-03	ci right 3.613423e-03	k: 121	n:40000
Cons ci ratio: 1.300018e-01	ci left: 2.077842e-02	ci right 2.369151e-02	k: 888	n:40000
KS ci ratio: 1.862743e-01	ci left: 9.929432e-03	ci right 1.199249e-02	k: 437	n:40000
OSGEP   40000 perm   7 sec   (5908 perm/sec)   p_kst 1.092500e-02   p_cons 2.220000e-02   p_joint 3.025000e-03

Joint ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
Cons ci ratio: 1.164517e-01	ci left: 2.086809e-02	ci right 2.346779e-02	k: 1107	n:50000
KS ci ratio: 1.692061e-01	ci left: 9.720862e-03	ci right 1.153663e-02	k: 530	n:50000
OSGEP   50000 perm   9 sec   (5704 perm/sec)   p_kst 1.060000e-02   p_cons 2.214000e-02   p_joint 2.860000e-03

Joint ci ratio: 2.933778e-01	ci left: 2.531910e-03	ci right 3.417251e-03	k: 177	n:60000
Cons ci ratio: 1.059233e-01	ci left: 2.113333e-02	ci right 2.351318e-02	k: 1338	n:60000
KS ci ratio: 1.546108e-01	ci left: 9.779948e-03	ci right 1.143457e-02	k: 635	n:60000
OSGEP   60000 perm   11 sec   (5580 perm/sec)   p_kst 1.058333e-02   p_cons 2.230000e-02   p_joint 2.950000e-03

Joint ci ratio: 2.694550e-01	ci left: 2.608437e-03	ci right 3.433613e-03	k: 210	n:70000
Cons ci ratio: 9.784735e-02	ci left: 2.131645e-02	ci right 2.352338e-02	k: 1568	n:70000
KS ci ratio: 1.432396e-01	ci left: 9.826995e-03	ci right 1.135684e-02	k: 740	n:70000
OSGEP   70000 perm   13 sec   (5447 perm/sec)   p_kst 1.057143e-02   p_cons 2.240000e-02   p_joint 3.000000e-03

Joint ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
Cons ci ratio: 9.119401e-02	ci left: 2.154453e-02	ci right 2.361529e-02	k: 1805	n:80000
KS ci ratio: 1.347835e-01	ci left: 9.756886e-03	ci right 1.117895e-02	k: 836	n:80000
OSGEP   80000 perm   15 sec   (5329 perm/sec)   p_kst 1.045000e-02   p_cons 2.256250e-02   p_joint 3.075000e-03

Joint ci ratio: 2.343189e-01	ci left: 2.736891e-03	ci right 3.473491e-03	k: 278	n:90000
Cons ci ratio: 8.623405e-02	ci left: 2.147570e-02	ci right 2.342191e-02	k: 2019	n:90000
KS ci ratio: 1.285051e-01	ci left: 9.575334e-03	ci right 1.090096e-02	k: 920	n:90000
OSGEP   90000 perm   17 sec   (5229 perm/sec)   p_kst 1.022222e-02   p_cons 2.243333e-02   p_joint 3.088889e-03

Joint ci ratio: 2.215787e-01	ci left: 2.774376e-03	ci right 3.474935e-03	k: 311	n:100000
Cons ci ratio: 8.185446e-02	ci left: 2.150150e-02	ci right 2.334635e-02	k: 2241	n:100000
KS ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
OSGEP   100000 perm   19 sec   (5138 perm/sec)   p_kst 1.038000e-02   p_cons 2.241000e-02   p_joint 3.110000e-03

Joint ci ratio: 2.074222e-01	ci left: 2.900712e-03	ci right 3.580442e-03	k: 355	n:110000
Cons ci ratio: 7.758306e-02	ci left: 2.180111e-02	ci right 2.356964e-02	k: 2494	n:110000
KS ci ratio: 1.145361e-01	ci left: 9.932528e-03	ci right 1.114803e-02	k: 1158	n:110000
OSGEP   110000 perm   22 sec   (5048 perm/sec)   p_kst 1.052727e-02   p_cons 2.267273e-02   p_joint 3.227273e-03

Joint ci ratio: 2.018408e-01	ci left: 2.817100e-03	ci right 3.457284e-03	k: 375	n:120000
Cons ci ratio: 7.436151e-02	ci left: 2.179102e-02	ci right 2.348216e-02	k: 2715	n:120000
KS ci ratio: 1.098077e-01	ci left: 9.930973e-03	ci right 1.109287e-02	k: 1260	n:120000
OSGEP   120000 perm   24 sec   (4962 perm/sec)   p_kst 1.050000e-02   p_cons 2.262500e-02   p_joint 3.125000e-03

Joint ci ratio: 1.930527e-01	ci left: 2.856332e-03	ci right 3.473851e-03	k: 410	n:130000
Cons ci ratio: 7.127507e-02	ci left: 2.192738e-02	ci right 2.355554e-02	k: 2955	n:130000
KS ci ratio: 1.048458e-01	ci left: 1.008037e-02	ci right 1.120316e-02	k: 1382	n:130000
OSGEP   130000 perm   27 sec   (4876 perm/sec)   p_kst 1.063077e-02   p_cons 2.273077e-02   p_joint 3.153846e-03

Joint ci ratio: 2.132781e-01	ci left: 2.150472e-03	ci right 2.670479e-03	k: 336	n:140000
Cons ci ratio: 6.895311e-02	ci left: 2.178566e-02	ci right 2.334848e-02	k: 3158	n:140000
KS ci ratio: 1.011138e-01	ci left: 1.008407e-02	ci right 1.116492e-02	k: 1486	n:140000
OSGEP   140000 perm   29 sec   (4797 perm/sec)   p_kst 1.061429e-02   p_cons 2.255714e-02   p_joint 2.400000e-03

Joint ci ratio: 2.060667e-01	ci left: 2.158709e-03	ci right 2.660834e-03	k: 360	n:150000
Cons ci ratio: 6.629158e-02	ci left: 2.202429e-02	ci right 2.354090e-02	k: 3416	n:150000
KS ci ratio: 9.794072e-02	ci left: 1.004886e-02	ci right 1.109019e-02	k: 1584	n:150000
OSGEP   150000 perm   32 sec   (4720 perm/sec)   p_kst 1.056000e-02   p_cons 2.277333e-02   p_joint 2.400000e-03

Joint ci ratio: 2.000621e-01	ci left: 2.154299e-03	ci right 2.639014e-03	k: 382	n:160000
Cons ci ratio: 6.413975e-02	ci left: 2.208030e-02	ci right 2.354957e-02	k: 3649	n:160000
KS ci ratio: 9.484961e-02	ci left: 1.006124e-02	ci right 1.106911e-02	k: 1689	n:160000
OSGEP   160000 perm   34 sec   (4645 perm/sec)   p_kst 1.055625e-02   p_cons 2.280625e-02   p_joint 2.387500e-03

Joint ci ratio: 1.965087e-01	ci left: 2.105834e-03	ci right 2.570221e-03	k: 396	n:170000
Cons ci ratio: 6.224217e-02	ci left: 2.208986e-02	ci right 2.351471e-02	k: 3875	n:170000
KS ci ratio: 9.260914e-02	ci left: 9.946164e-03	ci right 1.091770e-02	k: 1772	n:170000
OSGEP   170000 perm   37 sec   (4574 perm/sec)   p_kst 1.042353e-02   p_cons 2.279412e-02   p_joint 2.329412e-03

Joint ci ratio: 1.931379e-01	ci left: 2.062823e-03	ci right 2.509005e-03	k: 410	n:180000
Cons ci ratio: 6.041324e-02	ci left: 2.216462e-02	ci right 2.355081e-02	k: 4113	n:180000
KS ci ratio: 9.034815e-02	ci left: 9.882145e-03	ci right 1.082261e-02	k: 1862	n:180000
OSGEP   180000 perm   40 sec   (4504 perm/sec)   p_kst 1.034444e-02   p_cons 2.285000e-02   p_joint 2.277778e-03

Joint ci ratio: 1.883861e-01	ci left: 2.059501e-03	ci right 2.492750e-03	k: 431	n:190000
Cons ci ratio: 5.893789e-02	ci left: 2.208162e-02	ci right 2.342774e-02	k: 4322	n:190000
KS ci ratio: 8.794974e-02	ci left: 9.892054e-03	ci right 1.080719e-02	k: 1965	n:190000
OSGEP   190000 perm   43 sec   (4434 perm/sec)   p_kst 1.034211e-02   p_cons 2.274737e-02   p_joint 2.268421e-03

Joint ci ratio: 1.833610e-01	ci left: 2.070944e-03	ci right 2.493688e-03	k: 455	n:200000
Cons ci ratio: 5.730735e-02	ci left: 2.220448e-02	ci right 2.351940e-02	k: 4571	n:200000
KS ci ratio: 8.579561e-02	ci left: 9.886587e-03	ci right 1.077769e-02	k: 2065	n:200000
OSGEP   200000 perm   46 sec   (4367 perm/sec)   p_kst 1.032500e-02   p_cons 2.285500e-02   p_joint 2.275000e-03

Joint ci ratio: 1.772433e-01	ci left: 2.117838e-03	ci right 2.534185e-03	k: 487	n:210000
Cons ci ratio: 5.599553e-02	ci left: 2.216581e-02	ci right 2.344741e-02	k: 4788	n:210000
KS ci ratio: 8.342345e-02	ci left: 9.970492e-03	ci right 1.084310e-02	k: 2184	n:210000
OSGEP   210000 perm   49 sec   (4306 perm/sec)   p_kst 1.040000e-02   p_cons 2.280000e-02   p_joint 2.319048e-03

Joint ci ratio: 1.720316e-01	ci left: 2.151980e-03	ci right 2.561308e-03	k: 517	n:220000
Cons ci ratio: 5.478105e-02	ci left: 2.212199e-02	ci right 2.337245e-02	k: 5003	n:220000
KS ci ratio: 8.136272e-02	ci left: 1.001590e-02	ci right 1.086980e-02	k: 2296	n:220000
OSGEP   220000 perm   52 sec   (4244 perm/sec)   p_kst 1.043636e-02   p_cons 2.274091e-02   p_joint 2.350000e-03

Joint ci ratio: 1.677149e-01	ci left: 2.170818e-03	ci right 2.572322e-03	k: 544	n:230000
Cons ci ratio: 5.356359e-02	ci left: 2.214663e-02	ci right 2.336979e-02	k: 5233	n:230000
KS ci ratio: 7.953097e-02	ci left: 1.003629e-02	ci right 1.087177e-02	k: 2403	n:230000
OSGEP   230000 perm   55 sec   (4184 perm/sec)   p_kst 1.044783e-02   p_cons 2.275217e-02   p_joint 2.365217e-03

Joint ci ratio: 1.644296e-01	ci left: 2.168224e-03	ci right 2.560616e-03	k: 566	n:240000
Cons ci ratio: 5.234549e-02	ci left: 2.223530e-02	ci right 2.343459e-02	k: 5479	n:240000
KS ci ratio: 7.795893e-02	ci left: 1.001840e-02	ci right 1.083516e-02	k: 2501	n:240000
OSGEP   240000 perm   58 sec   (4122 perm/sec)   p_kst 1.042083e-02   p_cons 2.282917e-02   p_joint 2.358333e-03

Joint ci ratio: 1.613301e-01	ci left: 2.165908e-03	ci right 2.549775e-03	k: 588	n:250000
Cons ci ratio: 5.131704e-02	ci left: 2.222238e-02	ci right 2.339672e-02	k: 5701	n:250000
KS ci ratio: 7.643202e-02	ci left: 1.001386e-02	ci right 1.081355e-02	k: 2602	n:250000
OSGEP   250000 perm   62 sec   (4064 perm/sec)   p_kst 1.040800e-02   p_cons 2.280400e-02   p_joint 2.352000e-03

Joint ci ratio: 1.591848e-01	ci left: 2.141672e-03	ci right 2.515714e-03	k: 604	n:260000
Cons ci ratio: 5.030349e-02	ci left: 2.224865e-02	ci right 2.340048e-02	k: 5933	n:260000
KS ci ratio: 7.514606e-02	ci left: 9.968297e-03	ci right 1.075037e-02	k: 2692	n:260000
OSGEP   260000 perm   65 sec   (4006 perm/sec)   p_kst 1.035385e-02   p_cons 2.281923e-02   p_joint 2.323077e-03

Joint ci ratio: 1.569962e-01	ci left: 2.122821e-03	ci right 2.487994e-03	k: 621	n:270000
Cons ci ratio: 4.933953e-02	ci left: 2.228050e-02	ci right 2.341125e-02	k: 6167	n:270000
KS ci ratio: 7.382911e-02	ci left: 9.951664e-03	ci right 1.071816e-02	k: 2789	n:270000
OSGEP   270000 perm   68 sec   (3950 perm/sec)   p_kst 1.032963e-02   p_cons 2.284074e-02   p_joint 2.300000e-03

Joint ci ratio: 1.545323e-01	ci left: 2.115650e-03	ci right 2.473348e-03	k: 641	n:280000
Cons ci ratio: 4.847933e-02	ci left: 2.226440e-02	ci right 2.337408e-02	k: 6388	n:280000
KS ci ratio: 7.270640e-02	ci left: 9.901260e-03	ci right 1.065179e-02	k: 2876	n:280000
OSGEP   280000 perm   72 sec   (3897 perm/sec)   p_kst 1.027143e-02   p_cons 2.281429e-02   p_joint 2.289286e-03

Joint ci ratio: 1.520658e-01	ci left: 2.112332e-03	ci right 2.463250e-03	k: 662	n:290000
Cons ci ratio: 4.764787e-02	ci left: 2.226320e-02	ci right 2.335327e-02	k: 6613	n:290000
KS ci ratio: 7.153590e-02	ci left: 9.881511e-03	ci right 1.061798e-02	k: 2971	n:290000
OSGEP   290000 perm   75 sec   (3843 perm/sec)   p_kst 1.024483e-02   p_cons 2.280345e-02   p_joint 2.282759e-03

Joint ci ratio: 1.490599e-01	ci left: 2.128532e-03	ci right 2.474528e-03	k: 689	n:300000
Cons ci ratio: 4.689989e-02	ci left: 2.222268e-02	ci right 2.329323e-02	k: 6826	n:300000
KS ci ratio: 7.036225e-02	ci left: 9.879546e-03	ci right 1.060329e-02	k: 3071	n:300000
OSGEP   300000 perm   79 sec   (3793 perm/sec)   p_kst 1.023667e-02   p_cons 2.275333e-02   p_joint 2.296667e-03

Joint ci ratio: 1.469462e-01	ci left: 2.121996e-03	ci right 2.461609e-03	k: 709	n:310000
Cons ci ratio: 4.612241e-02	ci left: 2.224551e-02	ci right 2.329892e-02	k: 7058	n:310000
KS ci ratio: 6.913451e-02	ci left: 9.909506e-03	ci right 1.062227e-02	k: 3181	n:310000
OSGEP   310000 perm   83 sec   (3745 perm/sec)   p_kst 1.026129e-02   p_cons 2.276774e-02   p_joint 2.287097e-03

Joint ci ratio: 1.444250e-01	ci left: 2.130962e-03	ci right 2.465654e-03	k: 734	n:320000
Cons ci ratio: 4.540786e-02	ci left: 2.224233e-02	ci right 2.327884e-02	k: 7282	n:320000
KS ci ratio: 6.821003e-02	ci left: 9.867033e-03	ci right 1.056688e-02	k: 3268	n:320000
OSGEP   320000 perm   87 sec   (3698 perm/sec)   p_kst 1.021250e-02   p_cons 2.275625e-02   p_joint 2.293750e-03

Joint ci ratio: 1.430708e-01	ci left: 2.107284e-03	ci right 2.434888e-03	k: 748	n:330000
Cons ci ratio: 4.474382e-02	ci left: 2.222147e-02	ci right 2.324148e-02	k: 7500	n:330000
KS ci ratio: 6.735208e-02	ci left: 9.818255e-03	ci right 1.050554e-02	k: 3352	n:330000
OSGEP   330000 perm   90 sec   (3653 perm/sec)   p_kst 1.015758e-02   p_cons 2.272727e-02   p_joint 2.266667e-03

Joint ci ratio: 1.408320e-01	ci left: 2.113386e-03	ci right 2.436367e-03	k: 772	n:340000
Cons ci ratio: 4.409348e-02	ci left: 2.221650e-02	ci right 2.322107e-02	k: 7723	n:340000
KS ci ratio: 6.622464e-02	ci left: 9.862076e-03	ci right 1.054043e-02	k: 3467	n:340000
OSGEP   340000 perm   94 sec   (3609 perm/sec)   p_kst 1.019706e-02   p_cons 2.271471e-02   p_joint 2.270588e-03

Joint ci ratio: 1.385211e-01	ci left: 2.124695e-03	ci right 2.443635e-03	k: 798	n:350000
Cons ci ratio: 4.336194e-02	ci left: 2.232215e-02	ci right 2.331434e-02	k: 7985	n:350000
KS ci ratio: 6.512444e-02	ci left: 9.911917e-03	ci right 1.058194e-02	k: 3585	n:350000
OSGEP   350000 perm   98 sec   (3566 perm/sec)   p_kst 1.024286e-02   p_cons 2.281429e-02   p_joint 2.280000e-03

Joint ci ratio: 1.363202e-01	ci left: 2.135415e-03	ci right 2.450459e-03	k: 824	n:360000
Cons ci ratio: 4.277457e-02	ci left: 2.230937e-02	ci right 2.328723e-02	k: 8206	n:360000
KS ci ratio: 6.401621e-02	ci left: 9.978212e-03	ci right 1.064082e-02	k: 3710	n:360000
OSGEP   360000 perm   102 sec   (3522 perm/sec)   p_kst 1.030556e-02   p_cons 2.279444e-02   p_joint 2.288889e-03

Joint ci ratio: 1.336712e-01	ci left: 2.163881e-03	ci right 2.476428e-03	k: 857	n:370000
Cons ci ratio: 4.217716e-02	ci left: 2.233213e-02	ci right 2.329698e-02	k: 8440	n:370000
KS ci ratio: 6.307075e-02	ci left: 1.000643e-02	ci right 1.066073e-02	k: 3822	n:370000
OSGEP   370000 perm   106 sec   (3480 perm/sec)   p_kst 1.032973e-02   p_cons 2.281081e-02   p_joint 2.316216e-03

Joint ci ratio: 1.319899e-01	ci left: 2.162907e-03	ci right 2.471076e-03	k: 879	n:380000
Cons ci ratio: 4.170753e-02	ci left: 2.224439e-02	ci right 2.319449e-02	k: 8632	n:380000
KS ci ratio: 6.241488e-02	ci left: 9.952906e-03	ci right 1.059670e-02	k: 3903	n:380000
OSGEP   380000 perm   110 sec   (3440 perm/sec)   p_kst 1.027105e-02   p_cons 2.271579e-02   p_joint 2.313158e-03

Joint ci ratio: 1.304430e-01	ci left: 2.159526e-03	ci right 2.463328e-03	k: 900	n:390000
Cons ci ratio: 4.120073e-02	ci left: 2.221704e-02	ci right 2.315417e-02	k: 8846	n:390000
KS ci ratio: 6.157641e-02	ci left: 9.967811e-03	ci right 1.060360e-02	k: 4010	n:390000
OSGEP   390000 perm   115 sec   (3400 perm/sec)   p_kst 1.028205e-02   p_cons 2.268205e-02   p_joint 2.307692e-03

Joint ci ratio: 1.291601e-01	ci left: 2.149076e-03	ci right 2.448206e-03	k: 918	n:400000
Cons ci ratio: 4.065690e-02	ci left: 2.225053e-02	ci right 2.317640e-02	k: 9084	n:400000
KS ci ratio: 6.077084e-02	ci left: 9.982026e-03	ci right 1.061010e-02	k: 4117	n:400000
OSGEP   400000 perm   119 sec   (3361 perm/sec)   p_kst 1.029250e-02   p_cons 2.271000e-02   p_joint 2.295000e-03

Joint ci ratio: 1.272355e-01	ci left: 2.162763e-03	ci right 2.458975e-03	k: 946	n:410000
Cons ci ratio: 4.012304e-02	ci left: 2.229454e-02	ci right 2.320978e-02	k: 9327	n:410000
KS ci ratio: 5.995309e-02	ci left: 1.001002e-02	ci right 1.063108e-02	k: 4230	n:410000
OSGEP   410000 perm   123 sec   (3323 perm/sec)   p_kst 1.031707e-02   p_cons 2.274878e-02   p_joint 2.307317e-03

Joint ci ratio: 1.257180e-01	ci left: 2.164298e-03	ci right 2.456921e-03	k: 969	n:420000
Cons ci ratio: 3.965422e-02	ci left: 2.228702e-02	ci right 2.319101e-02	k: 9549	n:420000
KS ci ratio: 5.920191e-02	ci left: 1.002500e-02	ci right 1.063893e-02	k: 4338	n:420000
OSGEP   420000 perm   128 sec   (3286 perm/sec)   p_kst 1.032857e-02   p_cons 2.273571e-02   p_joint 2.307143e-03

Joint ci ratio: 1.237549e-01	ci left: 2.183811e-03	ci right 2.474123e-03	k: 1000	n:430000
Cons ci ratio: 3.918709e-02	ci left: 2.229603e-02	ci right 2.318949e-02	k: 9778	n:430000
KS ci ratio: 5.848493e-02	ci left: 1.003703e-02	ci right 1.064401e-02	k: 4445	n:430000
OSGEP   430000 perm   132 sec   (3249 perm/sec)   p_kst 1.033721e-02   p_cons 2.273953e-02   p_joint 2.325581e-03

Joint ci ratio: 1.224172e-01	ci left: 2.182639e-03	ci right 2.469432e-03	k: 1022	n:440000
Cons ci ratio: 3.871037e-02	ci left: 2.233395e-02	ci right 2.321780e-02	k: 10020	n:440000
KS ci ratio: 5.779979e-02	ci left: 1.004633e-02	ci right 1.064651e-02	k: 4551	n:440000
OSGEP   440000 perm   137 sec   (3215 perm/sec)   p_kst 1.034318e-02   p_cons 2.277273e-02   p_joint 2.322727e-03

Joint ci ratio: 1.210638e-01	ci left: 2.183691e-03	ci right 2.467223e-03	k: 1045	n:450000
Cons ci ratio: 3.830414e-02	ci left: 2.230861e-02	ci right 2.318199e-02	k: 10234	n:450000
KS ci ratio: 5.714438e-02	ci left: 1.005306e-02	ci right 1.064661e-02	k: 4656	n:450000
OSGEP   450000 perm   141 sec   (3182 perm/sec)   p_kst 1.034667e-02   p_cons 2.274222e-02   p_joint 2.322222e-03

Joint ci ratio: 1.200361e-01	ci left: 2.174169e-03	ci right 2.453898e-03	k: 1063	n:460000
Cons ci ratio: 3.793087e-02	ci left: 2.226073e-02	ci right 2.312356e-02	k: 10437	n:460000
KS ci ratio: 5.658286e-02	ci left: 1.003381e-02	ci right 1.062021e-02	k: 4749	n:460000
OSGEP   460000 perm   146 sec   (3148 perm/sec)   p_kst 1.032391e-02   p_cons 2.268913e-02   p_joint 2.310870e-03

Joint ci ratio: 1.189240e-01	ci left: 2.169191e-03	ci right 2.445512e-03	k: 1083	n:470000
Cons ci ratio: 3.752503e-02	ci left: 2.226552e-02	ci right 2.311910e-02	k: 10664	n:470000
KS ci ratio: 5.595008e-02	ci left: 1.004688e-02	ci right 1.062727e-02	k: 4857	n:470000
OSGEP   470000 perm   151 sec   (3116 perm/sec)   p_kst 1.033404e-02   p_cons 2.268936e-02   p_joint 2.304255e-03

Joint ci ratio: 1.177888e-01	ci left: 2.166454e-03	ci right 2.439609e-03	k: 1104	n:480000
Cons ci ratio: 3.710754e-02	ci left: 2.229906e-02	ci right 2.314421e-02	k: 10905	n:480000
KS ci ratio: 5.539445e-02	ci left: 1.003889e-02	ci right 1.061287e-02	k: 4955	n:480000
OSGEP   480000 perm   156 sec   (3083 perm/sec)   p_kst 1.032292e-02   p_cons 2.271875e-02   p_joint 2.300000e-03

Joint ci ratio: 1.163751e-01	ci left: 2.175730e-03	ci right 2.446535e-03	k: 1131	n:490000
Cons ci ratio: 3.671380e-02	ci left: 2.231915e-02	ci right 2.315590e-02	k: 11140	n:490000
KS ci ratio: 5.483314e-02	ci left: 1.003931e-02	ci right 1.060732e-02	k: 5057	n:490000
OSGEP   490000 perm   161 sec   (3052 perm/sec)   p_kst 1.032041e-02   p_cons 2.273469e-02   p_joint 2.308163e-03

Joint ci ratio: 1.150112e-01	ci left: 2.184653e-03	ci right 2.453166e-03	k: 1158	n:500000
Cons ci ratio: 3.632416e-02	ci left: 2.234839e-02	ci right 2.317716e-02	k: 11380	n:500000
KS ci ratio: 5.434711e-02	ci left: 1.001804e-02	ci right 1.057966e-02	k: 5148	n:500000
OSGEP   500000 perm   166 sec   (3020 perm/sec)   p_kst 1.029600e-02   p_cons 2.276000e-02   p_joint 2.316000e-03

Joint ci ratio: 1.138867e-01	ci left: 2.185624e-03	ci right 2.451453e-03	k: 1181	n:510000
Cons ci ratio: 3.594825e-02	ci left: 2.237458e-02	ci right 2.319556e-02	k: 11619	n:510000
KS ci ratio: 5.379086e-02	ci left: 1.002858e-02	ci right 1.058485e-02	k: 5255	n:510000
OSGEP   510000 perm   171 sec   (2989 perm/sec)   p_kst 1.030392e-02   p_cons 2.278235e-02   p_joint 2.315686e-03

Joint ci ratio: 1.130299e-01	ci left: 2.177225e-03	ci right 2.439908e-03	k: 1199	n:520000
Cons ci ratio: 3.560222e-02	ci left: 2.237693e-02	ci right 2.318993e-02	k: 11846	n:520000
KS ci ratio: 5.330661e-02	ci left: 1.001786e-02	ci right 1.056839e-02	k: 5351	n:520000
OSGEP   520000 perm   176 sec   (2959 perm/sec)   p_kst 1.029038e-02   p_cons 2.278077e-02   p_joint 2.305769e-03

Joint ci ratio: 1.121921e-01	ci left: 2.169150e-03	ci right 2.428791e-03	k: 1217	n:530000
Cons ci ratio: 3.529441e-02	ci left: 2.234370e-02	ci right 2.314833e-02	k: 12054	n:530000
KS ci ratio: 5.284011e-02	ci left: 1.000571e-02	ci right 1.055061e-02	k: 5446	n:530000
OSGEP   530000 perm   181 sec   (2929 perm/sec)   p_kst 1.027547e-02   p_cons 2.274340e-02   p_joint 2.296226e-03

Joint ci ratio: 1.115084e-01	ci left: 2.155981e-03	ci right 2.412369e-03	k: 1232	n:540000
Cons ci ratio: 3.496966e-02	ci left: 2.234293e-02	ci right 2.313998e-02	k: 12279	n:540000
KS ci ratio: 5.243825e-02	ci left: 9.973922e-03	ci right 1.051283e-02	k: 5530	n:540000
OSGEP   540000 perm   186 sec   (2900 perm/sec)   p_kst 1.024074e-02   p_cons 2.273889e-02   p_joint 2.281481e-03

Joint ci ratio: 1.104827e-01	ci left: 2.157438e-03	ci right 2.411486e-03	k: 1255	n:550000
Cons ci ratio: 3.462963e-02	ci left: 2.237287e-02	ci right 2.316308e-02	k: 12521	n:550000
KS ci ratio: 5.190087e-02	ci left: 9.998944e-03	ci right 1.053351e-02	k: 5645	n:550000
OSGEP   550000 perm   192 sec   (2871 perm/sec)   p_kst 1.026364e-02   p_cons 2.276545e-02   p_joint 2.281818e-03

Joint ci ratio: 1.096999e-01	ci left: 2.150170e-03	ci right 2.401452e-03	k: 1273	n:560000
Cons ci ratio: 3.430896e-02	ci left: 2.238939e-02	ci right 2.317271e-02	k: 12756	n:560000
KS ci ratio: 5.143382e-02	ci left: 1.000194e-02	ci right 1.053171e-02	k: 5748	n:560000
OSGEP   560000 perm   197 sec   (2842 perm/sec)   p_kst 1.026429e-02   p_cons 2.277857e-02   p_joint 2.273214e-03

Joint ci ratio: 1.091454e-01	ci left: 2.134630e-03	ci right 2.382753e-03	k: 1286	n:570000
Cons ci ratio: 3.402787e-02	ci left: 2.236534e-02	ci right 2.314128e-02	k: 12968	n:570000
KS ci ratio: 5.100117e-02	ci left: 9.996199e-03	ci right 1.052108e-02	k: 5846	n:570000
OSGEP   570000 perm   203 sec   (2814 perm/sec)   p_kst 1.025614e-02   p_cons 2.275088e-02   p_joint 2.256140e-03

Joint ci ratio: 1.081830e-01	ci left: 2.136403e-03	ci right 2.382404e-03	k: 1309	n:580000
Cons ci ratio: 3.374309e-02	ci left: 2.235582e-02	ci right 2.312482e-02	k: 13188	n:580000
KS ci ratio: 5.047642e-02	ci left: 1.003153e-02	ci right 1.055269e-02	k: 5968	n:580000
OSGEP   580000 perm   208 sec   (2787 perm/sec)   p_kst 1.028966e-02   p_cons 2.273793e-02   p_joint 2.256897e-03

Joint ci ratio: 1.072053e-01	ci left: 2.139775e-03	ci right 2.383797e-03	k: 1333	n:590000
Cons ci ratio: 3.345642e-02	ci left: 2.235842e-02	ci right 2.312085e-02	k: 13415	n:590000
KS ci ratio: 5.003399e-02	ci left: 1.003891e-02	ci right 1.055575e-02	k: 6074	n:590000
OSGEP   590000 perm   214 sec   (2759 perm/sec)   p_kst 1.029492e-02   p_cons 2.273729e-02   p_joint 2.259322e-03

Joint ci ratio: 1.064502e-01	ci left: 2.134933e-03	ci right 2.376580e-03	k: 1352	n:600000
Cons ci ratio: 3.318315e-02	ci left: 2.235270e-02	ci right 2.310859e-02	k: 13637	n:600000
KS ci ratio: 4.961109e-02	ci left: 1.004277e-02	ci right 1.055531e-02	k: 6178	n:600000
OSGEP   600000 perm   219 sec   (2734 perm/sec)   p_kst 1.029667e-02   p_cons 2.272833e-02   p_joint 2.253333e-03

Joint ci ratio: 1.054416e-01	ci left: 2.141428e-03	ci right 2.381371e-03	k: 1378	n:610000
Cons ci ratio: 3.287282e-02	ci left: 2.240573e-02	ci right 2.315619e-02	k: 13895	n:610000
KS ci ratio: 4.925422e-02	ci left: 1.002385e-02	ci right 1.053164e-02	k: 6268	n:610000
OSGEP   610000 perm   225 sec   (2708 perm/sec)   p_kst 1.027541e-02   p_cons 2.277869e-02   p_joint 2.259016e-03

Joint ci ratio: 1.046480e-01	ci left: 2.139870e-03	ci right 2.377723e-03	k: 1399	n:620000
Cons ci ratio: 3.260877e-02	ci left: 2.240588e-02	ci right 2.315020e-02	k: 14121	n:620000
KS ci ratio: 4.885063e-02	ci left: 1.002786e-02	ci right 1.053157e-02	k: 6372	n:620000
OSGEP   620000 perm   231 sec   (2683 perm/sec)   p_kst 1.027742e-02   p_cons 2.277581e-02   p_joint 2.256452e-03

Joint ci ratio: 1.039820e-01	ci left: 2.133729e-03	ci right 2.369298e-03	k: 1417	n:630000
Cons ci ratio: 3.233945e-02	ci left: 2.242179e-02	ci right 2.316038e-02	k: 14357	n:630000
KS ci ratio: 4.842282e-02	ci left: 1.004587e-02	ci right 1.054595e-02	k: 6485	n:630000
OSGEP   630000 perm   237 sec   (2658 perm/sec)   p_kst 1.029365e-02   p_cons 2.278889e-02   p_joint 2.249206e-03

Joint ci ratio: 1.030056e-01	ci left: 2.141485e-03	ci right 2.375556e-03	k: 1444	n:640000
Cons ci ratio: 3.206096e-02	ci left: 2.245894e-02	ci right 2.319226e-02	k: 14607	n:640000
KS ci ratio: 4.799871e-02	ci left: 1.006643e-02	ci right 1.056302e-02	k: 6600	n:640000
OSGEP   640000 perm   243 sec   (2634 perm/sec)   p_kst 1.031250e-02   p_cons 2.282344e-02   p_joint 2.256250e-03

Joint ci ratio: 1.021606e-01	ci left: 2.144515e-03	ci right 2.376879e-03	k: 1468	n:650000
Cons ci ratio: 3.182683e-02	ci left: 2.244307e-02	ci right 2.317042e-02	k: 14823	n:650000
KS ci ratio: 4.763215e-02	ci left: 1.006661e-02	ci right 1.055931e-02	k: 6702	n:650000
OSGEP   650000 perm   249 sec   (2610 perm/sec)   p_kst 1.031077e-02   p_cons 2.280462e-02   p_joint 2.258462e-03

Joint ci ratio: 1.014042e-01	ci left: 2.144508e-03	ci right 2.375048e-03	k: 1490	n:660000
Cons ci ratio: 3.158809e-02	ci left: 2.244123e-02	ci right 2.316297e-02	k: 15048	n:660000
KS ci ratio: 4.730549e-02	ci left: 1.005332e-02	ci right 1.054190e-02	k: 6795	n:660000
OSGEP   660000 perm   255 sec   (2587 perm/sec)   p_kst 1.029545e-02   p_cons 2.280000e-02   p_joint 2.257576e-03

Joint ci ratio: 1.006309e-01	ci left: 2.145961e-03	ci right 2.374794e-03	k: 1513	n:670000
Cons ci ratio: 3.137777e-02	ci left: 2.240688e-02	ci right 2.312263e-02	k: 15251	n:670000
KS ci ratio: 4.696479e-02	ci left: 1.004929e-02	ci right 1.053406e-02	k: 6894	n:670000
OSGEP   670000 perm   261 sec   (2564 perm/sec)   p_kst 1.028955e-02   p_cons 2.276269e-02   p_joint 2.258209e-03

Joint ci ratio: 1.001367e-01	ci left: 2.135907e-03	ci right 2.362484e-03	k: 1528	n:680000
Cons ci ratio: 3.116540e-02	ci left: 2.238231e-02	ci right 2.309235e-02	k: 15460	n:680000
KS ci ratio: 4.661788e-02	ci left: 1.005120e-02	ci right 1.053239e-02	k: 6997	n:680000
OSGEP   680000 perm   268 sec   (2540 perm/sec)   p_kst 1.028971e-02   p_cons 2.273529e-02   p_joint 2.247059e-03

Joint ci ratio: 9.916799e-02	ci left: 2.147347e-03	ci right 2.372806e-03	k: 1558	n:690000
Cons ci ratio: 3.093609e-02	ci left: 2.238868e-02	ci right 2.309360e-02	k: 15690	n:690000
KS ci ratio: 4.627196e-02	ci left: 1.005594e-02	ci right 1.053369e-02	k: 7102	n:690000
OSGEP   690000 perm   274 sec   (2517 perm/sec)   p_kst 1.029275e-02   p_cons 2.273913e-02   p_joint 2.257971e-03

Outputting figure to mutsig2_images.part000000000124/OSGEP.2_1052_690000_0.010293_0.022739_0.002258.png
                gene_name: OSGEP
               theta_stop: 0.099 
                    nperm: 690000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0024 

Current progress: 85 percent done.
OSGIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
OSGIN1   10000 perm   1 sec   (6949 perm/sec)   p_kst 7.394000e-01   p_cons 7.630000e-02   p_joint 8.300000e-02

Joint ci ratio: 5.098270e-02	ci left: 2.222995e-01	ci right 2.339796e-01	k: 4562	n:20000
Cons ci ratio: 8.937081e-02	ci left: 8.381499e-02	ci right 9.170534e-02	k: 1754	n:20000
KS ci ratio: 1.663279e-02	ci left: 7.290765e-01	ci right 7.413551e-01	k: 14705	n:20000
OSGIN1   20000 perm   3 sec   (6207 perm/sec)   p_kst 7.352500e-01   p_cons 8.770000e-02   p_joint 2.281000e-01

Outputting figure to mutsig2_images.part000000000124/OSGIN1.2_1711_20000_0.73525_0.0877_0.2281.png
                gene_name: OSGIN1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 87 percent done.
OSGIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
KS ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
OSGIN2   10000 perm   1 sec   (7074 perm/sec)   p_kst 8.048000e-01   p_cons 6.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSGIN2.2_1674_10000_0.8048_0.6248_1.png
                gene_name: OSGIN2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
OSM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
Cons ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
KS ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
OSM   10000 perm   1 sec   (7511 perm/sec)   p_kst 2.985000e-01   p_cons 7.250000e-01   p_joint 9.075000e-01

Outputting figure to mutsig2_images.part000000000124/OSM.2_771_10000_0.2985_0.725_0.9075.png
                gene_name: OSM
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 91 percent done.
OSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
OSR1   10000 perm   1 sec   (7508 perm/sec)   p_kst 5.632000e-01   p_cons 5.730000e-01   p_joint 6.901000e-01

Outputting figure to mutsig2_images.part000000000124/OSR1.2_809_10000_0.5632_0.573_0.6901.png
                gene_name: OSR1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 93 percent done.
OSTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
Cons ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
OSTC   10000 perm   1 sec   (7212 perm/sec)   p_kst 9.080000e-02   p_cons 2.240000e-01   p_joint 9.970000e-02

Joint ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
Cons ci ratio: 5.090322e-02	ci left: 2.228445e-01	ci right 2.345345e-01	k: 4573	n:20000
KS ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
OSTC   20000 perm   3 sec   (6572 perm/sec)   p_kst 8.850000e-02   p_cons 2.286500e-01   p_joint 3.920000e-02

Joint ci ratio: 1.174521e-01	ci left: 3.369361e-02	ci right 3.793023e-02	k: 1073	n:30000
Cons ci ratio: 4.131269e-02	ci left: 2.260417e-01	ci right 2.356105e-01	k: 6924	n:30000
KS ci ratio: 7.296385e-02	ci left: 8.455536e-02	ci right 9.099139e-02	k: 2632	n:30000
OSTC   30000 perm   5 sec   (6280 perm/sec)   p_kst 8.773333e-02   p_cons 2.308000e-01   p_joint 3.576667e-02

Joint ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
Cons ci ratio: 3.600950e-02	ci left: 2.244175e-01	ci right 2.326719e-01	k: 9141	n:40000
KS ci ratio: 6.262013e-02	ci left: 8.642413e-02	ci right 9.203567e-02	k: 3568	n:40000
OSTC   40000 perm   7 sec   (6081 perm/sec)   p_kst 8.920000e-02   p_cons 2.285250e-01   p_joint 3.150000e-02

Joint ci ratio: 1.067091e-01	ci left: 2.487593e-02	ci right 2.769943e-02	k: 1313	n:50000
Cons ci ratio: 3.203986e-02	ci left: 2.266949e-01	ci right 2.340964e-01	k: 11519	n:50000
KS ci ratio: 5.611463e-02	ci left: 8.641934e-02	ci right 9.142851e-02	k: 4445	n:50000
OSTC   50000 perm   8 sec   (5920 perm/sec)   p_kst 8.890000e-02   p_cons 2.303800e-01   p_joint 2.626000e-02

Joint ci ratio: 9.756437e-02	ci left: 2.492027e-02	ci right 2.749250e-02	k: 1571	n:60000
Cons ci ratio: 2.914692e-02	ci left: 2.282458e-01	ci right 2.350135e-01	k: 13897	n:60000
KS ci ratio: 5.145446e-02	ci left: 8.592603e-02	ci right 9.048056e-02	k: 5291	n:60000
OSTC   60000 perm   10 sec   (5780 perm/sec)   p_kst 8.818333e-02   p_cons 2.316167e-01   p_joint 2.618333e-02

Outputting figure to mutsig2_images.part000000000124/OSTC.2_466_60000_0.088183_0.23162_0.026183.png
                gene_name: OSTC
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 95 percent done.
OTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
Cons ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
KS ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
OTP   10000 perm   1 sec   (7247 perm/sec)   p_kst 5.174000e-01   p_cons 4.686000e-01   p_joint 7.702000e-01

Outputting figure to mutsig2_images.part000000000124/OTP.2_990_10000_0.5174_0.4686_0.7702.png
                gene_name: OTP
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 96 percent done.
OTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
KS ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
OTX2   10000 perm   1 sec   (7407 perm/sec)   p_kst 4.797000e-01   p_cons 3.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTX2.2_906_10000_0.4797_0.3319_1.png
                gene_name: OTX2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
OXTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 5.351485e-02	ci left: 3.397522e-01	ci right 3.585358e-01	k: 3491	n:10000
KS ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
OXTR   10000 perm   1 sec   (7426 perm/sec)   p_kst 2.209000e-01   p_cons 3.491000e-01   p_joint 2.209000e-01

Outputting figure to mutsig2_images.part000000000124/OXTR.2_1178_10000_0.2209_0.3491_0.2209.png
                gene_name: OXTR
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000124
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 124 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1536>
Subject: Job 4422280: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1536>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000125> was used as the working directory.
Started at Wed Oct 24 18:02:21 2012
Results reported at Wed Oct 24 21:50:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000125.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000125.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 125  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000125.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14777.20 sec.
    Max Memory :      9308 MB
    Max Swap   :     11620 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
125
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 125
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 125: processing genes 11219 - 11309
Calculating significance of each gene.
Using projection method.
11219	P2RX5	1.919498e-01
11220	P2RX6	1
11221	P2RX7	7.029519e-01
11222	P2RY1	3.547211e-01
11223	P2RY10	6.501533e-04
11224	P2RY11	1
11225	P2RY12	3.493247e-01
11226	P2RY13	1
11227	P2RY14	3.061419e-01
11228	P2RY2	1
11229	P2RY4	8.240340e-01
11230	P2RY6	1
11231	P2RY8	3.758167e-01
11232	P4HA1	9.605562e-01
11233	P4HA2	8.693080e-01
11234	P4HA3	8.074738e-01
11235	P4HB	7.883568e-01
11236	P4HTM	1.568246e-01
11237	PA2G4	7.492318e-01
11238	PAAF1	9.238202e-01
11239	PABPC1	9.519034e-01
11240	PABPC1L	6.398403e-01
11241	PABPC3	1.245478e-04
11242	PABPC4	1
11243	PABPC5	5.367555e-01
11244	PABPN1	5.557621e-01
11245	PABPN1L	1
11246	PACRG	5.186074e-01
11247	PACRGL	7.220715e-01
11248	PACS1	9.663780e-01
11249	PACS2	5.529303e-01
11250	PACSIN1	5.087379e-01
11251	PACSIN2	9.252767e-01
11252	PACSIN3	8.082260e-01
11253	PADI1	7.836325e-01
11254	PADI2	4.531325e-01
11255	PADI3	7.959332e-01
11256	PADI4	9.830115e-01
11257	PADI6	7.225196e-01
11258	PAEP	1
11259	PAF1	7.690426e-01
11260	PAFAH1B1	1
11261	PAFAH1B2	2.743122e-01
11262	PAFAH1B3	5.400774e-01
11263	PAFAH2	8.793522e-01
11264	PAG1	5.099321e-01
11265	PAGE1	1
11266	PAGE2	5.923681e-02
11267	PAGE2B	9.719410e-02
11268	PAGE4	1
11269	PAGE5	3.585634e-01
11270	PAH	1
11271	PAICS	1
11272	PAIP1	6.366463e-01
11273	PAIP2	4.374153e-01
11274	PAIP2B	1.065811e-01
11275	PAK1	8.741663e-01
11276	PAK1IP1	7.211060e-01
11277	PAK2	9.611573e-01
11278	PAK3	1.041013e-01
11279	PAK4	1
11280	PAK6	1
11281	PAK7	2.528243e-01
11282	PALB2	4.395719e-01
11283	PALLD	1
11284	PALM	6.652180e-01
11285	PALM2	1
11286	PALM2-AKAP2	6.344542e-02
11287	PALMD	6.527459e-01
11288	PAM	7.936250e-01
11289	PAMR1	9.520430e-01
11290	PAN2	1
11291	PAN3	5.660487e-01
11292	PANK1	7.675241e-01
11293	PANK2	5.796686e-01
11294	PANK3	6.174142e-01
11295	PANK4	9.887274e-01
11296	PANX1	1
11297	PANX2	1
11298	PANX3	6.793127e-01
11299	PAOX	1
11300	PAPD4	1
11301	PAPD5	1
11302	PAPD7	5.886974e-01
11303	PAPL	9.519102e-01
11304	PAPLN	9.436229e-01
11305	PAPOLA	1.603399e-01
11306	PAPOLB	4.784349e-01
11307	PAPOLG	2.788416e-01
11308	PAPPA	9.995864e-01
11309	PAPPA2	1
Done

Running MutSig 2:
Scatter job 125: processing genes 11219 - 11309
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PAPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
Cons ci ratio: 3.693164e-02	ci left: 5.198600e-01	ci right 5.395227e-01	k: 5297	n:10000
KS ci ratio: 2.360353e-02	ci left: 7.251213e-01	ci right 7.425423e-01	k: 7339	n:10000
PAPPA2   10000 perm   4 sec   (2269 perm/sec)   p_kst 7.339000e-01   p_cons 5.297000e-01   p_joint 7.019000e-01

Outputting figure to mutsig2_images.part000000000125/PAPPA2.53_5517_10000_0.7339_0.5297_0.7019.png
                gene_name: PAPPA2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 2 percent done.
PAK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.491783e-02	ci left: 7.032156e-01	ci right 7.210607e-01	k: 7122	n:10000
Cons ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
KS ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
PAK7   10000 perm   2 sec   (4037 perm/sec)   p_kst 5.818000e-01   p_cons 7.628000e-01   p_joint 7.122000e-01

Outputting figure to mutsig2_images.part000000000125/PAK7.19_2192_10000_0.5818_0.7628_0.7122.png
                gene_name: PAK7
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 3 percent done.
PABPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
PABPC5   10000 perm   2 sec   (4596 perm/sec)   p_kst 2.118000e-01   p_cons 8.787000e-01   p_joint 3.150000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC5.13_1153_10000_0.2118_0.8787_0.315.png
                gene_name: PABPC5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 5 percent done.
PABPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
PABPC3   10000 perm   2 sec   (4859 perm/sec)   p_kst 4.000000e-04   p_cons 1.340000e-01   p_joint 0

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
PABPC3   20000 perm   5 sec   (4333 perm/sec)   p_kst 4.000000e-04   p_cons 1.116000e-01   p_joint 3.950000e-03

Joint ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
Cons ci ratio: 6.375818e-02	ci left: 1.083209e-01	ci right 1.154878e-01	k: 3356	n:30000
KS ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
PABPC3   30000 perm   7 sec   (4103 perm/sec)   p_kst 4.000000e-04   p_cons 1.118667e-01   p_joint 3.300000e-03

Joint ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
Cons ci ratio: 5.523722e-02	ci left: 1.087276e-01	ci right 1.149288e-01	k: 4472	n:40000
KS ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
PABPC3   40000 perm   10 sec   (3992 perm/sec)   p_kst 3.500000e-04   p_cons 1.118000e-01   p_joint 2.425000e-03

Joint ci ratio: 4.493085e-01	ci left: 1.180022e-03	ci right 1.879905e-03	k: 75	n:50000
Cons ci ratio: 4.951676e-02	ci left: 1.086153e-01	ci right 1.141499e-01	k: 5568	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
PABPC3   50000 perm   13 sec   (3907 perm/sec)   p_kst 4.200000e-04   p_cons 1.113600e-01   p_joint 1.500000e-03

Joint ci ratio: 4.152074e-01	ci left: 1.176471e-03	ci right 1.806667e-03	k: 88	n:60000
Cons ci ratio: 4.504636e-02	ci left: 1.095366e-01	ci right 1.146010e-01	k: 6723	n:60000
KS ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
PABPC3   60000 perm   16 sec   (3829 perm/sec)   p_kst 4.000000e-04   p_cons 1.120500e-01   p_joint 1.466667e-03

Joint ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
Cons ci ratio: 4.173682e-02	ci left: 1.095737e-01	ci right 1.142586e-01	k: 7833	n:70000
KS ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
PABPC3   70000 perm   19 sec   (3757 perm/sec)   p_kst 3.714286e-04   p_cons 1.119000e-01   p_joint 1.414286e-03

Joint ci ratio: 3.652768e-01	ci left: 1.175589e-03	ci right 1.711615e-03	k: 114	n:80000
Cons ci ratio: 3.894615e-02	ci left: 1.102067e-01	ci right 1.145965e-01	k: 8991	n:80000
KS ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
PABPC3   80000 perm   22 sec   (3676 perm/sec)   p_kst 3.750000e-04   p_cons 1.123875e-01   p_joint 1.425000e-03

Joint ci ratio: 3.917800e-01	ci left: 8.941129e-04	ci right 1.339050e-03	k: 99	n:90000
Cons ci ratio: 3.679055e-02	ci left: 1.099466e-01	ci right 1.140784e-01	k: 10080	n:90000
KS ci ratio: 6.196652e-01	ci left: 3.081599e-04	ci right 5.923338e-04	k: 39	n:90000
PABPC3   90000 perm   25 sec   (3613 perm/sec)   p_kst 4.333333e-04   p_cons 1.120000e-01   p_joint 1.100000e-03

Joint ci ratio: 3.591301e-01	ci left: 9.768116e-04	ci right 1.412951e-03	k: 118	n:100000
Cons ci ratio: 3.489577e-02	ci left: 1.100913e-01	ci right 1.140112e-01	k: 11204	n:100000
KS ci ratio: 5.716535e-01	ci left: 3.367969e-04	ci right 6.135284e-04	k: 46	n:100000
PABPC3   100000 perm   28 sec   (3558 perm/sec)   p_kst 4.600000e-04   p_cons 1.120400e-01   p_joint 1.180000e-03

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 3.333353e-02	ci left: 1.098172e-01	ci right 1.135488e-01	k: 12284	n:110000
KS ci ratio: 5.542432e-01	ci left: 3.295673e-04	ci right 5.888723e-04	k: 49	n:110000
PABPC3   110000 perm   31 sec   (3501 perm/sec)   p_kst 4.454545e-04   p_cons 1.116727e-01   p_joint 1.045455e-03

Joint ci ratio: 3.860817e-01	ci left: 6.931249e-04	ci right 1.031748e-03	k: 102	n:120000
Cons ci ratio: 3.191017e-02	ci left: 1.099230e-01	ci right 1.134958e-01	k: 13404	n:120000
KS ci ratio: 5.598833e-01	ci left: 2.949427e-04	ci right 5.303074e-04	k: 48	n:120000
PABPC3   120000 perm   35 sec   (3441 perm/sec)   p_kst 4.000000e-04   p_cons 1.117000e-01   p_joint 8.500000e-04

Joint ci ratio: 3.719096e-01	ci left: 6.954853e-04	ci right 1.019756e-03	k: 110	n:130000
Cons ci ratio: 3.062873e-02	ci left: 1.101835e-01	ci right 1.136184e-01	k: 14546	n:130000
KS ci ratio: 5.191008e-01	ci left: 3.254143e-04	ci right 5.593537e-04	k: 56	n:130000
PABPC3   130000 perm   38 sec   (3389 perm/sec)   p_kst 4.307692e-04   p_cons 1.118923e-01   p_joint 8.461538e-04

Joint ci ratio: 3.719211e-01	ci left: 6.458045e-04	ci right 9.469218e-04	k: 110	n:140000
Cons ci ratio: 2.951777e-02	ci left: 1.102248e-01	ci right 1.135342e-01	k: 15662	n:140000
KS ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
PABPC3   140000 perm   42 sec   (3340 perm/sec)   p_kst 4.428571e-04   p_cons 1.118714e-01   p_joint 7.857143e-04

Joint ci ratio: 3.622616e-01	ci left: 6.390611e-04	ci right 9.274681e-04	k: 116	n:150000
Cons ci ratio: 2.858481e-02	ci left: 1.098120e-01	ci right 1.130031e-01	k: 16710	n:150000
KS ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
PABPC3   150000 perm   46 sec   (3295 perm/sec)   p_kst 4.533333e-04   p_cons 1.114000e-01   p_joint 7.733333e-04

Joint ci ratio: 3.861235e-01	ci left: 5.198340e-04	ci right 7.738287e-04	k: 102	n:160000
Cons ci ratio: 2.765101e-02	ci left: 1.100486e-01	ci right 1.131404e-01	k: 17854	n:160000
KS ci ratio: 4.651137e-01	ci left: 3.410681e-04	ci right 5.527231e-04	k: 70	n:160000
PABPC3   160000 perm   49 sec   (3251 perm/sec)   p_kst 4.375000e-04   p_cons 1.115875e-01   p_joint 6.375000e-04

Joint ci ratio: 3.670174e-01	ci left: 5.478421e-04	ci right 7.991061e-04	k: 113	n:170000
Cons ci ratio: 2.680788e-02	ci left: 1.102239e-01	ci right 1.132247e-01	k: 18992	n:170000
KS ci ratio: 4.466230e-01	ci left: 3.522472e-04	ci right 5.595293e-04	k: 76	n:170000
PABPC3   170000 perm   53 sec   (3206 perm/sec)   p_kst 4.470588e-04   p_cons 1.117176e-01   p_joint 6.647059e-04

Joint ci ratio: 3.638446e-01	ci left: 5.274962e-04	ci right 7.668403e-04	k: 115	n:180000
Cons ci ratio: 2.603745e-02	ci left: 1.103809e-01	ci right 1.132983e-01	k: 20130	n:180000
KS ci ratio: 4.381707e-01	ci left: 3.474874e-04	ci right 5.469569e-04	k: 79	n:180000
PABPC3   180000 perm   57 sec   (3162 perm/sec)   p_kst 4.388889e-04   p_cons 1.118333e-01   p_joint 6.388889e-04

Joint ci ratio: 3.562492e-01	ci left: 5.236686e-04	ci right 7.551669e-04	k: 120	n:190000
Cons ci ratio: 2.533520e-02	ci left: 1.104806e-01	ci right 1.133207e-01	k: 21260	n:190000
KS ci ratio: 4.276114e-01	ci left: 3.479569e-04	ci right 5.415032e-04	k: 83	n:190000
PABPC3   190000 perm   61 sec   (3121 perm/sec)   p_kst 4.368421e-04   p_cons 1.118947e-01   p_joint 6.315789e-04

Joint ci ratio: 3.519164e-01	ci left: 5.111504e-04	ci right 7.337385e-04	k: 123	n:200000
Cons ci ratio: 2.465464e-02	ci left: 1.108299e-01	ci right 1.136014e-01	k: 22442	n:200000
KS ci ratio: 4.108331e-01	ci left: 3.618682e-04	ci right 5.530979e-04	k: 90	n:200000
PABPC3   200000 perm   65 sec   (3080 perm/sec)   p_kst 4.500000e-04   p_cons 1.122100e-01   p_joint 6.150000e-04

Joint ci ratio: 3.463759e-01	ci left: 5.041869e-04	ci right 7.195106e-04	k: 127	n:210000
Cons ci ratio: 2.405021e-02	ci left: 1.109478e-01	ci right 1.136533e-01	k: 23582	n:210000
KS ci ratio: 4.042257e-01	ci left: 3.574573e-04	ci right 5.425029e-04	k: 93	n:210000
PABPC3   210000 perm   69 sec   (3042 perm/sec)   p_kst 4.428571e-04   p_cons 1.122952e-01   p_joint 6.047619e-04

Joint ci ratio: 3.360326e-01	ci left: 5.145184e-04	ci right 7.262720e-04	k: 135	n:220000
Cons ci ratio: 2.351549e-02	ci left: 1.108252e-01	ci right 1.134668e-01	k: 24671	n:220000
KS ci ratio: 3.880470e-01	ci left: 3.739522e-04	ci right 5.578095e-04	k: 101	n:220000
PABPC3   220000 perm   73 sec   (3004 perm/sec)   p_kst 4.590909e-04   p_cons 1.121409e-01   p_joint 6.136364e-04

Joint ci ratio: 3.477469e-01	ci left: 4.563736e-04	ci right 6.522227e-04	k: 126	n:230000
Cons ci ratio: 2.300587e-02	ci left: 1.107917e-01	ci right 1.133746e-01	k: 25778	n:230000
KS ci ratio: 3.736671e-01	ci left: 3.891476e-04	ci right 5.716522e-04	k: 109	n:230000
PABPC3   230000 perm   78 sec   (2967 perm/sec)   p_kst 4.739130e-04   p_cons 1.120783e-01   p_joint 5.478261e-04

Joint ci ratio: 3.398122e-01	ci left: 4.602002e-04	ci right 6.521965e-04	k: 132	n:240000
Cons ci ratio: 2.254028e-02	ci left: 1.106538e-01	ci right 1.131805e-01	k: 26859	n:240000
KS ci ratio: 3.670537e-01	ci left: 3.880486e-04	ci right 5.660446e-04	k: 113	n:240000
PABPC3   240000 perm   82 sec   (2926 perm/sec)   p_kst 4.708333e-04   p_cons 1.119125e-01   p_joint 5.500000e-04

Joint ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
Cons ci ratio: 2.209028e-02	ci left: 1.106309e-01	ci right 1.131061e-01	k: 27966	n:250000
KS ci ratio: 3.592596e-01	ci left: 3.907020e-04	ci right 5.652197e-04	k: 118	n:250000
PABPC3   250000 perm   86 sec   (2891 perm/sec)   p_kst 4.720000e-04   p_cons 1.118640e-01   p_joint 5.320000e-04

Joint ci ratio: 3.312106e-01	ci left: 4.494552e-04	ci right 6.312109e-04	k: 139	n:260000
Cons ci ratio: 2.165488e-02	ci left: 1.107136e-01	ci right 1.131412e-01	k: 29100	n:260000
KS ci ratio: 3.519418e-01	ci left: 3.931881e-04	ci right 5.644220e-04	k: 123	n:260000
PABPC3   260000 perm   91 sec   (2856 perm/sec)   p_kst 4.730769e-04   p_cons 1.119231e-01   p_joint 5.346154e-04

Joint ci ratio: 3.254503e-01	ci left: 4.498010e-04	ci right 6.278722e-04	k: 144	n:270000
Cons ci ratio: 2.126763e-02	ci left: 1.105731e-01	ci right 1.129537e-01	k: 30175	n:270000
KS ci ratio: 3.491392e-01	ci left: 3.853805e-04	ci right 5.515750e-04	k: 125	n:270000
PABPC3   270000 perm   96 sec   (2823 perm/sec)   p_kst 4.629630e-04   p_cons 1.117593e-01   p_joint 5.333333e-04

Joint ci ratio: 3.210529e-01	ci left: 4.468632e-04	ci right 6.208893e-04	k: 148	n:280000
Cons ci ratio: 2.087787e-02	ci left: 1.106564e-01	ci right 1.129945e-01	k: 31310	n:280000
KS ci ratio: 3.398258e-01	ci left: 3.944549e-04	ci right 5.590296e-04	k: 132	n:280000
PABPC3   280000 perm   100 sec   (2790 perm/sec)   p_kst 4.714286e-04   p_cons 1.118214e-01   p_joint 5.285714e-04

Joint ci ratio: 2.225216e-01	ci left: 9.500660e-04	ci right 1.191118e-03	k: 309	n:290000
Cons ci ratio: 2.052910e-02	ci left: 1.105385e-01	ci right 1.128347e-01	k: 32388	n:290000
KS ci ratio: 3.348285e-01	ci left: 3.934778e-04	ci right 5.547099e-04	k: 136	n:290000
PABPC3   290000 perm   105 sec   (2759 perm/sec)   p_kst 4.689655e-04   p_cons 1.116828e-01   p_joint 1.065517e-03

Joint ci ratio: 2.207506e-01	ci left: 9.341377e-04	ci right 1.169006e-03	k: 314	n:300000
Cons ci ratio: 2.018299e-02	ci left: 1.105683e-01	ci right 1.128259e-01	k: 33508	n:300000
KS ci ratio: 3.300454e-01	ci left: 3.925825e-04	ci right 5.506618e-04	k: 140	n:300000
PABPC3   300000 perm   110 sec   (2728 perm/sec)   p_kst 4.666667e-04   p_cons 1.116933e-01   p_joint 1.046667e-03

Joint ci ratio: 2.221709e-01	ci left: 8.918145e-04	ci right 1.117681e-03	k: 310	n:310000
Cons ci ratio: 1.983737e-02	ci left: 1.107602e-01	ci right 1.129826e-01	k: 34679	n:310000
KS ci ratio: 3.221446e-01	ci left: 4.006514e-04	ci right 5.573206e-04	k: 147	n:310000
PABPC3   310000 perm   115 sec   (2696 perm/sec)   p_kst 4.741935e-04   p_cons 1.118677e-01   p_joint 1.000000e-03

Joint ci ratio: 2.169978e-01	ci left: 9.082434e-04	ci right 1.132201e-03	k: 325	n:320000
Cons ci ratio: 1.951565e-02	ci left: 1.108719e-01	ci right 1.130601e-01	k: 35828	n:320000
KS ci ratio: 3.168370e-01	ci left: 4.025033e-04	ci right 5.567780e-04	k: 152	n:320000
PABPC3   320000 perm   120 sec   (2666 perm/sec)   p_kst 4.750000e-04   p_cons 1.119625e-01   p_joint 1.015625e-03

Joint ci ratio: 2.204113e-01	ci left: 8.520748e-04	ci right 1.065936e-03	k: 315	n:330000
Cons ci ratio: 1.858533e-02	ci left: 1.176889e-01	ci right 1.198997e-01	k: 39201	n:330000
KS ci ratio: 3.147875e-01	ci left: 3.958862e-04	ci right 5.464457e-04	k: 154	n:330000
PABPC3   330000 perm   125 sec   (2637 perm/sec)   p_kst 4.666667e-04   p_cons 1.187909e-01   p_joint 9.545455e-04

Joint ci ratio: 2.160117e-01	ci left: 8.631602e-04	ci right 1.074905e-03	k: 328	n:340000
Cons ci ratio: 1.830662e-02	ci left: 1.177435e-01	ci right 1.199218e-01	k: 40402	n:340000
KS ci ratio: 3.127774e-01	ci left: 3.896615e-04	ci right 5.367182e-04	k: 156	n:340000
PABPC3   340000 perm   130 sec   (2607 perm/sec)   p_kst 4.588235e-04   p_cons 1.188294e-01   p_joint 9.647059e-04

Joint ci ratio: 2.147122e-01	ci left: 8.493099e-04	ci right 1.056239e-03	k: 332	n:350000
Cons ci ratio: 1.804352e-02	ci left: 1.177554e-01	ci right 1.199023e-01	k: 41589	n:350000
KS ci ratio: 3.079126e-01	ci left: 3.917017e-04	ci right 5.367780e-04	k: 161	n:350000
PABPC3   350000 perm   136 sec   (2579 perm/sec)   p_kst 4.600000e-04   p_cons 1.188257e-01   p_joint 9.485714e-04

Joint ci ratio: 2.134357e-01	ci left: 8.362328e-04	ci right 1.038606e-03	k: 336	n:360000
Cons ci ratio: 1.778320e-02	ci left: 1.178637e-01	ci right 1.199813e-01	k: 42811	n:360000
KS ci ratio: 3.041804e-01	ci left: 3.910790e-04	ci right 5.338292e-04	k: 165	n:360000
PABPC3   360000 perm   141 sec   (2552 perm/sec)   p_kst 4.583333e-04   p_cons 1.189194e-01   p_joint 9.333333e-04

Joint ci ratio: 2.134385e-01	ci left: 8.136309e-04	ci right 1.010537e-03	k: 336	n:370000
Cons ci ratio: 1.753926e-02	ci left: 1.179018e-01	ci right 1.199907e-01	k: 44009	n:370000
KS ci ratio: 3.005808e-01	ci left: 3.905001e-04	ci right 5.310300e-04	k: 169	n:370000
PABPC3   370000 perm   146 sec   (2526 perm/sec)   p_kst 4.567568e-04   p_cons 1.189432e-01   p_joint 9.081081e-04

Joint ci ratio: 2.118736e-01	ci left: 8.046763e-04	ci right 9.978018e-04	k: 341	n:380000
Cons ci ratio: 1.730422e-02	ci left: 1.179485e-01	ci right 1.200099e-01	k: 45211	n:380000
KS ci ratio: 2.988292e-01	ci left: 3.850910e-04	ci right 5.227135e-04	k: 171	n:380000
PABPC3   380000 perm   152 sec   (2499 perm/sec)   p_kst 4.500000e-04   p_cons 1.189763e-01   p_joint 8.973684e-04

Joint ci ratio: 2.088421e-01	ci left: 8.083340e-04	ci right 9.992068e-04	k: 351	n:390000
Cons ci ratio: 1.707462e-02	ci left: 1.180390e-01	ci right 1.200744e-01	k: 46431	n:390000
KS ci ratio: 2.929269e-01	ci left: 3.918339e-04	ci right 5.285872e-04	k: 178	n:390000
PABPC3   390000 perm   158 sec   (2474 perm/sec)   p_kst 4.564103e-04   p_cons 1.190538e-01   p_joint 9.000000e-04

Joint ci ratio: 2.065089e-01	ci left: 8.070855e-04	ci right 9.952653e-04	k: 359	n:400000
Cons ci ratio: 1.685995e-02	ci left: 1.180504e-01	ci right 1.200601e-01	k: 47621	n:400000
KS ci ratio: 2.905033e-01	ci left: 3.889892e-04	ci right 5.234199e-04	k: 181	n:400000
PABPC3   400000 perm   163 sec   (2450 perm/sec)   p_kst 4.525000e-04   p_cons 1.190525e-01   p_joint 8.975000e-04

Joint ci ratio: 2.067988e-01	ci left: 7.850868e-04	ci right 9.684268e-04	k: 358	n:410000
Cons ci ratio: 1.665744e-02	ci left: 1.180079e-01	ci right 1.199926e-01	k: 48789	n:410000
KS ci ratio: 2.873628e-01	ci left: 3.885508e-04	ci right 5.211148e-04	k: 185	n:410000
PABPC3   410000 perm   169 sec   (2424 perm/sec)   p_kst 4.512195e-04   p_cons 1.189976e-01   p_joint 8.731707e-04

Joint ci ratio: 2.091464e-01	ci left: 7.483371e-04	ci right 9.253329e-04	k: 350	n:420000
Cons ci ratio: 1.645178e-02	ci left: 1.180981e-01	ci right 1.200595e-01	k: 50012	n:420000
KS ci ratio: 2.858311e-01	ci left: 3.837191e-04	ci right 5.138108e-04	k: 187	n:420000
PABPC3   420000 perm   175 sec   (2400 perm/sec)   p_kst 4.452381e-04   p_cons 1.190762e-01   p_joint 8.333333e-04

Joint ci ratio: 2.065154e-01	ci left: 7.507749e-04	ci right 9.258314e-04	k: 359	n:430000
Cons ci ratio: 1.625625e-02	ci left: 1.181495e-01	ci right 1.200882e-01	k: 51220	n:430000
KS ci ratio: 2.806530e-01	ci left: 3.899185e-04	ci right 5.192937e-04	k: 194	n:430000
PABPC3   430000 perm   181 sec   (2376 perm/sec)   p_kst 4.511628e-04   p_cons 1.191163e-01   p_joint 8.348837e-04

Joint ci ratio: 2.140907e-01	ci left: 6.798823e-04	ci right 8.449882e-04	k: 334	n:440000
Cons ci ratio: 1.608321e-02	ci left: 1.179948e-01	ci right 1.199102e-01	k: 52338	n:440000
KS ci ratio: 2.778183e-01	ci left: 3.895111e-04	ci right 5.172174e-04	k: 198	n:440000
PABPC3   440000 perm   187 sec   (2353 perm/sec)   p_kst 4.500000e-04   p_cons 1.189500e-01   p_joint 7.590909e-04

Joint ci ratio: 2.285441e-01	ci left: 5.787043e-04	ci right 7.300673e-04	k: 293	n:450000
Cons ci ratio: 1.590798e-02	ci left: 1.179468e-01	ci right 1.198403e-01	k: 53501	n:450000
KS ci ratio: 2.743924e-01	ci left: 3.911973e-04	ci right 5.176021e-04	k: 203	n:450000
PABPC3   450000 perm   193 sec   (2329 perm/sec)   p_kst 4.511111e-04   p_cons 1.188911e-01   p_joint 6.511111e-04

Joint ci ratio: 2.262472e-01	ci left: 5.784242e-04	ci right 7.279815e-04	k: 299	n:460000
Cons ci ratio: 1.573655e-02	ci left: 1.179248e-01	ci right 1.197974e-01	k: 54675	n:460000
KS ci ratio: 2.710902e-01	ci left: 3.928194e-04	ci right 5.179608e-04	k: 208	n:460000
PABPC3   460000 perm   199 sec   (2307 perm/sec)   p_kst 4.521739e-04   p_cons 1.188587e-01   p_joint 6.500000e-04

Joint ci ratio: 2.236529e-01	ci left: 5.801718e-04	ci right 7.282239e-04	k: 306	n:470000
Cons ci ratio: 1.557245e-02	ci left: 1.178784e-01	ci right 1.197306e-01	k: 55837	n:470000
KS ci ratio: 2.666606e-01	ci left: 3.983514e-04	ci right 5.228353e-04	k: 215	n:470000
PABPC3   470000 perm   206 sec   (2285 perm/sec)   p_kst 4.574468e-04   p_cons 1.188021e-01   p_joint 6.510638e-04

Joint ci ratio: 2.194047e-01	ci left: 5.916983e-04	ci right 7.394369e-04	k: 318	n:480000
Cons ci ratio: 1.541123e-02	ci left: 1.178631e-01	ci right 1.196957e-01	k: 57013	n:480000
KS ci ratio: 2.648283e-01	ci left: 3.958860e-04	ci right 5.186084e-04	k: 218	n:480000
PABPC3   480000 perm   212 sec   (2264 perm/sec)   p_kst 4.541667e-04   p_cons 1.187771e-01   p_joint 6.625000e-04

Joint ci ratio: 2.160438e-01	ci left: 5.989184e-04	ci right 7.458653e-04	k: 328	n:490000
Cons ci ratio: 1.525031e-02	ci left: 1.179116e-01	ci right 1.197256e-01	k: 58220	n:490000
KS ci ratio: 2.624426e-01	ci left: 3.954305e-04	ci right 5.167261e-04	k: 222	n:490000
PABPC3   490000 perm   219 sec   (2242 perm/sec)   p_kst 4.530612e-04   p_cons 1.188163e-01   p_joint 6.693878e-04

Joint ci ratio: 2.187226e-01	ci left: 5.718102e-04	ci right 7.140795e-04	k: 320	n:500000
Cons ci ratio: 1.509274e-02	ci left: 1.179801e-01	ci right 1.197763e-01	k: 59438	n:500000
KS ci ratio: 2.606953e-01	ci left: 3.931285e-04	ci right 5.127842e-04	k: 225	n:500000
PABPC3   500000 perm   225 sec   (2221 perm/sec)   p_kst 4.500000e-04   p_cons 1.188760e-01   p_joint 6.400000e-04

Joint ci ratio: 2.157189e-01	ci left: 5.772855e-04	ci right 7.186833e-04	k: 329	n:510000
Cons ci ratio: 1.494079e-02	ci left: 1.180344e-01	ci right 1.198131e-01	k: 60650	n:510000
KS ci ratio: 2.578584e-01	ci left: 3.945869e-04	ci right 5.131692e-04	k: 230	n:510000
PABPC3   510000 perm   232 sec   (2200 perm/sec)   p_kst 4.509804e-04   p_cons 1.189216e-01   p_joint 6.450980e-04

Joint ci ratio: 2.197552e-01	ci left: 5.443642e-04	ci right 6.805306e-04	k: 317	n:520000
Cons ci ratio: 1.479117e-02	ci left: 1.181173e-01	ci right 1.198793e-01	k: 61878	n:520000
KS ci ratio: 2.551121e-01	ci left: 3.959961e-04	ci right 5.135327e-04	k: 235	n:520000
PABPC3   520000 perm   238 sec   (2181 perm/sec)   p_kst 4.519231e-04   p_cons 1.189962e-01   p_joint 6.096154e-04

Joint ci ratio: 2.183865e-01	ci left: 5.412262e-04	ci right 6.756512e-04	k: 321	n:530000
Cons ci ratio: 1.465136e-02	ci left: 1.181200e-01	ci right 1.198653e-01	k: 63065	n:530000
KS ci ratio: 2.540386e-01	ci left: 3.920572e-04	ci right 5.078574e-04	k: 237	n:530000
PABPC3   530000 perm   245 sec   (2159 perm/sec)   p_kst 4.471698e-04   p_cons 1.189906e-01   p_joint 6.056604e-04

Joint ci ratio: 2.177122e-01	ci left: 5.347047e-04	ci right 6.670451e-04	k: 323	n:540000
Cons ci ratio: 1.451518e-02	ci left: 1.181264e-01	ci right 1.198554e-01	k: 64254	n:540000
KS ci ratio: 2.519304e-01	ci left: 3.917346e-04	ci right 5.063287e-04	k: 241	n:540000
PABPC3   540000 perm   252 sec   (2140 perm/sec)   p_kst 4.462963e-04   p_cons 1.189889e-01   p_joint 5.981481e-04

Joint ci ratio: 2.293395e-01	ci left: 4.700544e-04	ci right 5.934877e-04	k: 291	n:550000
Cons ci ratio: 1.438411e-02	ci left: 1.181128e-01	ci right 1.198258e-01	k: 65432	n:550000
KS ci ratio: 2.483634e-01	ci left: 3.965418e-04	ci right 5.106460e-04	k: 248	n:550000
PABPC3   550000 perm   259 sec   (2121 perm/sec)   p_kst 4.509091e-04   p_cons 1.189673e-01   p_joint 5.290909e-04

Joint ci ratio: 2.309286e-01	ci left: 4.549291e-04	ci right 5.753363e-04	k: 287	n:560000
Cons ci ratio: 1.425701e-02	ci left: 1.180925e-01	ci right 1.197900e-01	k: 66606	n:560000
KS ci ratio: 2.473725e-01	ci left: 3.928102e-04	ci right 5.053203e-04	k: 250	n:560000
PABPC3   560000 perm   266 sec   (2102 perm/sec)   p_kst 4.464286e-04   p_cons 1.189393e-01   p_joint 5.125000e-04

Joint ci ratio: 2.305296e-01	ci left: 4.486007e-04	ci right 5.670986e-04	k: 288	n:570000
Cons ci ratio: 1.413771e-02	ci left: 1.180066e-01	ci right 1.196885e-01	k: 67742	n:570000
KS ci ratio: 2.468820e-01	ci left: 3.875644e-04	ci right 4.983180e-04	k: 251	n:570000
PABPC3   570000 perm   274 sec   (2083 perm/sec)   p_kst 4.403509e-04   p_cons 1.188456e-01   p_joint 5.052632e-04

Joint ci ratio: 2.285609e-01	ci left: 4.489912e-04	ci right 5.664366e-04	k: 293	n:580000
Cons ci ratio: 1.401952e-02	ci left: 1.179512e-01	ci right 1.196182e-01	k: 68894	n:580000
KS ci ratio: 2.449457e-01	ci left: 3.873538e-04	ci right 4.970471e-04	k: 255	n:580000
PABPC3   580000 perm   281 sec   (2066 perm/sec)   p_kst 4.396552e-04   p_cons 1.187828e-01   p_joint 5.051724e-04

Joint ci ratio: 2.274040e-01	ci left: 4.461754e-04	ci right 5.622107e-04	k: 296	n:590000
Cons ci ratio: 1.389782e-02	ci left: 1.179940e-01	ci right 1.196470e-01	k: 70103	n:590000
KS ci ratio: 2.425880e-01	ci left: 3.887455e-04	ci right 4.976137e-04	k: 260	n:590000
PABPC3   590000 perm   288 sec   (2048 perm/sec)   p_kst 4.406780e-04   p_cons 1.188186e-01   p_joint 5.016949e-04

Joint ci ratio: 2.262645e-01	ci left: 4.434550e-04	ci right 5.581243e-04	k: 299	n:600000
Cons ci ratio: 1.378450e-02	ci left: 1.179557e-01	ci right 1.195946e-01	k: 71264	n:600000
KS ci ratio: 2.407503e-01	ci left: 3.885294e-04	ci right 4.963897e-04	k: 264	n:600000
PABPC3   600000 perm   295 sec   (2031 perm/sec)   p_kst 4.400000e-04   p_cons 1.187733e-01   p_joint 4.983333e-04

Joint ci ratio: 2.240351e-01	ci left: 4.454667e-04	ci right 5.593645e-04	k: 305	n:610000
Cons ci ratio: 1.366236e-02	ci left: 1.180953e-01	ci right 1.197215e-01	k: 72533	n:610000
KS ci ratio: 2.380699e-01	ci left: 3.914062e-04	ci right 4.986771e-04	k: 270	n:610000
PABPC3   610000 perm   303 sec   (2013 perm/sec)   p_kst 4.426230e-04   p_cons 1.189066e-01   p_joint 5.000000e-04

Joint ci ratio: 2.233071e-01	ci left: 4.413267e-04	ci right 5.537489e-04	k: 307	n:620000
Cons ci ratio: 1.355153e-02	ci left: 1.181050e-01	ci right 1.197180e-01	k: 73724	n:620000
KS ci ratio: 2.376326e-01	ci left: 3.866099e-04	ci right 4.923429e-04	k: 271	n:620000
PABPC3   620000 perm   311 sec   (1996 perm/sec)   p_kst 4.370968e-04   p_cons 1.189097e-01   p_joint 4.951613e-04

Joint ci ratio: 2.244040e-01	ci left: 4.298263e-04	ci right 5.399311e-04	k: 304	n:630000
Cons ci ratio: 1.344172e-02	ci left: 1.181397e-01	ci right 1.197400e-01	k: 74931	n:630000
KS ci ratio: 2.359044e-01	ci left: 3.864458e-04	ci right 4.912531e-04	k: 275	n:630000
PABPC3   630000 perm   318 sec   (1979 perm/sec)   p_kst 4.365079e-04   p_cons 1.189381e-01   p_joint 4.825397e-04

Joint ci ratio: 2.215171e-01	ci left: 4.349123e-04	ci right 5.446915e-04	k: 312	n:640000
Cons ci ratio: 1.333813e-02	ci left: 1.181173e-01	ci right 1.197049e-01	k: 76102	n:640000
KS ci ratio: 2.321489e-01	ci left: 3.936458e-04	ci right 4.984625e-04	k: 284	n:640000
PABPC3   640000 perm   326 sec   (1962 perm/sec)   p_kst 4.437500e-04   p_cons 1.189094e-01   p_joint 4.875000e-04

Joint ci ratio: 2.244057e-01	ci left: 4.166005e-04	ci right 5.233183e-04	k: 304	n:650000
Cons ci ratio: 1.323776e-02	ci left: 1.180819e-01	ci right 1.196569e-01	k: 77264	n:650000
KS ci ratio: 2.309369e-01	ci left: 3.919374e-04	ci right 4.956766e-04	k: 287	n:650000
PABPC3   650000 perm   334 sec   (1946 perm/sec)   p_kst 4.415385e-04   p_cons 1.188677e-01   p_joint 4.676923e-04

Joint ci ratio: 2.255189e-01	ci left: 4.059988e-04	ci right 5.105885e-04	k: 301	n:660000
Cons ci ratio: 1.313935e-02	ci left: 1.180521e-01	ci right 1.196149e-01	k: 78429	n:660000
KS ci ratio: 2.285679e-01	ci left: 3.945667e-04	ci right 4.977794e-04	k: 293	n:660000
PABPC3   660000 perm   342 sec   (1930 perm/sec)   p_kst 4.439394e-04   p_cons 1.188318e-01   p_joint 4.560606e-04

Joint ci ratio: 2.233112e-01	ci left: 4.083911e-04	ci right 5.124255e-04	k: 307	n:670000
Cons ci ratio: 1.304198e-02	ci left: 1.180410e-01	ci right 1.195921e-01	k: 79606	n:670000
KS ci ratio: 2.274109e-01	ci left: 3.928995e-04	ci right 4.950829e-04	k: 296	n:670000
PABPC3   670000 perm   350 sec   (1914 perm/sec)   p_kst 4.417910e-04   p_cons 1.188149e-01   p_joint 4.582090e-04

Joint ci ratio: 2.211672e-01	ci left: 4.107177e-04	ci right 5.142036e-04	k: 313	n:680000
Cons ci ratio: 1.294383e-02	ci left: 1.180773e-01	ci right 1.196171e-01	k: 80815	n:680000
KS ci ratio: 2.251478e-01	ci left: 3.954450e-04	ci right 4.971250e-04	k: 302	n:680000
PABPC3   680000 perm   358 sec   (1899 perm/sec)   p_kst 4.441176e-04   p_cons 1.188456e-01   p_joint 4.602941e-04

Joint ci ratio: 2.194270e-01	ci left: 4.116119e-04	ci right 5.143969e-04	k: 318	n:690000
Cons ci ratio: 1.284831e-02	ci left: 1.181054e-01	ci right 1.196341e-01	k: 82019	n:690000
KS ci ratio: 2.233127e-01	ci left: 3.965534e-04	ci right 4.975729e-04	k: 307	n:690000
PABPC3   690000 perm   366 sec   (1884 perm/sec)   p_kst 4.449275e-04   p_cons 1.188681e-01   p_joint 4.608696e-04

Joint ci ratio: 2.262726e-01	ci left: 3.801028e-04	ci right 4.783943e-04	k: 299	n:700000
Cons ci ratio: 1.275036e-02	ci left: 1.182067e-01	ci right 1.197250e-01	k: 83275	n:700000
KS ci ratio: 2.211686e-01	ci left: 3.989827e-04	ci right 4.995125e-04	k: 313	n:700000
PABPC3   700000 perm   375 sec   (1869 perm/sec)   p_kst 4.471429e-04   p_cons 1.189643e-01   p_joint 4.271429e-04

Joint ci ratio: 2.266516e-01	ci left: 3.734206e-04	ci right 4.701683e-04	k: 298	n:710000
Cons ci ratio: 1.266141e-02	ci left: 1.181929e-01	ci right 1.197003e-01	k: 84451	n:710000
KS ci ratio: 2.204680e-01	ci left: 3.960242e-04	ci right 4.954496e-04	k: 315	n:710000
PABPC3   710000 perm   383 sec   (1854 perm/sec)   p_kst 4.436620e-04   p_cons 1.189451e-01   p_joint 4.197183e-04

Joint ci ratio: 2.435330e-01	ci left: 3.159452e-04	ci right 4.048223e-04	k: 258	n:720000
Cons ci ratio: 1.257421e-02	ci left: 1.181809e-01	ci right 1.196777e-01	k: 85628	n:720000
KS ci ratio: 2.190858e-01	ci left: 3.957736e-04	ci right 4.944293e-04	k: 319	n:720000
PABPC3   720000 perm   391 sec   (1840 perm/sec)   p_kst 4.430556e-04   p_cons 1.189278e-01   p_joint 3.583333e-04

Joint ci ratio: 2.412155e-01	ci left: 3.180506e-04	ci right 4.065412e-04	k: 263	n:730000
Cons ci ratio: 1.248316e-02	ci left: 1.182635e-01	ci right 1.197505e-01	k: 86874	n:730000
KS ci ratio: 2.170601e-01	ci left: 3.981224e-04	ci right 4.963236e-04	k: 325	n:730000
PABPC3   730000 perm   400 sec   (1826 perm/sec)   p_kst 4.452055e-04   p_cons 1.190055e-01   p_joint 3.602740e-04

Joint ci ratio: 2.380793e-01	ci left: 3.226442e-04	ci right 4.110737e-04	k: 270	n:740000
Cons ci ratio: 1.239646e-02	ci left: 1.183035e-01	ci right 1.197805e-01	k: 88090	n:740000
KS ci ratio: 2.150895e-01	ci left: 4.004118e-04	ci right 4.981627e-04	k: 331	n:740000
PABPC3   740000 perm   409 sec   (1811 perm/sec)   p_kst 4.472973e-04   p_cons 1.190405e-01   p_joint 3.648649e-04

Joint ci ratio: 2.367724e-01	ci left: 3.221044e-04	ci right 4.098302e-04	k: 273	n:750000
Cons ci ratio: 1.231154e-02	ci left: 1.183425e-01	ci right 1.198098e-01	k: 89306	n:750000
KS ci ratio: 2.147668e-01	ci left: 3.963344e-04	ci right 4.929256e-04	k: 332	n:750000
PABPC3   750000 perm   417 sec   (1798 perm/sec)   p_kst 4.426667e-04   p_cons 1.190747e-01   p_joint 3.640000e-04

Joint ci ratio: 2.350628e-01	ci left: 3.228183e-04	ci right 4.100114e-04	k: 277	n:760000
Cons ci ratio: 1.222811e-02	ci left: 1.183844e-01	ci right 1.198422e-01	k: 90525	n:760000
KS ci ratio: 2.134885e-01	ci left: 3.961004e-04	ci right 4.919848e-04	k: 336	n:760000
PABPC3   760000 perm   426 sec   (1784 perm/sec)   p_kst 4.421053e-04   p_cons 1.191118e-01   p_joint 3.644737e-04

Joint ci ratio: 1.726780e-01	ci left: 6.110807e-04	ci right 7.277938e-04	k: 514	n:770000
Cons ci ratio: 1.214552e-02	ci left: 1.184395e-01	ci right 1.198881e-01	k: 91755	n:770000
KS ci ratio: 2.122328e-01	ci left: 3.958741e-04	ci right 4.910667e-04	k: 340	n:770000
PABPC3   770000 perm   435 sec   (1771 perm/sec)   p_kst 4.415584e-04   p_cons 1.191623e-01   p_joint 6.675325e-04

Joint ci ratio: 1.715162e-01	ci left: 6.118341e-04	ci right 7.278236e-04	k: 521	n:780000
Cons ci ratio: 1.206739e-02	ci left: 1.184446e-01	ci right 1.198839e-01	k: 92947	n:780000
KS ci ratio: 2.103897e-01	ci left: 3.980841e-04	ci right 4.928697e-04	k: 346	n:780000
PABPC3   780000 perm   444 sec   (1758 perm/sec)   p_kst 4.435897e-04   p_cons 1.191628e-01   p_joint 6.679487e-04

Joint ci ratio: 1.723449e-01	ci left: 5.980323e-04	ci right 7.120099e-04	k: 516	n:790000
Cons ci ratio: 1.199371e-02	ci left: 1.183979e-01	ci right 1.198277e-01	k: 94098	n:790000
KS ci ratio: 2.094863e-01	ci left: 3.966429e-04	ci right 4.906277e-04	k: 349	n:790000
PABPC3   790000 perm   453 sec   (1746 perm/sec)   p_kst 4.417722e-04   p_cons 1.191114e-01   p_joint 6.531646e-04

Joint ci ratio: 1.708638e-01	ci left: 6.013238e-04	ci right 7.148424e-04	k: 525	n:800000
Cons ci ratio: 1.191448e-02	ci left: 1.184733e-01	ci right 1.198945e-01	k: 95346	n:800000
KS ci ratio: 2.068431e-01	ci left: 4.023486e-04	ci right 4.963303e-04	k: 358	n:800000
PABPC3   800000 perm   462 sec   (1733 perm/sec)   p_kst 4.475000e-04   p_cons 1.191825e-01   p_joint 6.562500e-04

Joint ci ratio: 1.692621e-01	ci left: 6.057204e-04	ci right 7.188877e-04	k: 535	n:810000
Cons ci ratio: 1.183923e-02	ci left: 1.185037e-01	ci right 1.199163e-01	k: 96559	n:810000
KS ci ratio: 2.048553e-01	ci left: 4.055779e-04	ci right 4.992895e-04	k: 365	n:810000
PABPC3   810000 perm   471 sec   (1721 perm/sec)   p_kst 4.506173e-04   p_cons 1.192086e-01   p_joint 6.604938e-04

Joint ci ratio: 1.700583e-01	ci left: 5.924945e-04	ci right 7.037650e-04	k: 530	n:820000
Cons ci ratio: 1.176471e-02	ci left: 1.185456e-01	ci right 1.199497e-01	k: 97782	n:820000
KS ci ratio: 2.031963e-01	ci left: 4.075751e-04	ci right 5.008909e-04	k: 371	n:820000
PABPC3   820000 perm   480 sec   (1709 perm/sec)   p_kst 4.524390e-04   p_cons 1.192463e-01   p_joint 6.463415e-04

Joint ci ratio: 1.730186e-01	ci left: 5.645996e-04	ci right 6.726699e-04	k: 512	n:830000
Cons ci ratio: 1.169184e-02	ci left: 1.185818e-01	ci right 1.199775e-01	k: 99001	n:830000
KS ci ratio: 2.021126e-01	ci left: 4.072393e-04	ci right 4.999196e-04	k: 375	n:830000
PABPC3   830000 perm   489 sec   (1697 perm/sec)   p_kst 4.518072e-04   p_cons 1.192783e-01   p_joint 6.168675e-04

Joint ci ratio: 1.768553e-01	ci left: 5.328335e-04	ci right 6.373270e-04	k: 490	n:840000
Cons ci ratio: 1.162315e-02	ci left: 1.185660e-01	ci right 1.199533e-01	k: 100177	n:840000
KS ci ratio: 2.015776e-01	ci left: 4.046518e-04	ci right 4.964693e-04	k: 377	n:840000
PABPC3   840000 perm   499 sec   (1685 perm/sec)   p_kst 4.488095e-04   p_cons 1.192583e-01   p_joint 5.833333e-04

Joint ci ratio: 1.788721e-01	ci left: 5.141994e-04	ci right 6.163129e-04	k: 479	n:850000
Cons ci ratio: 1.155377e-02	ci left: 1.185846e-01	ci right 1.199638e-01	k: 101382	n:850000
KS ci ratio: 1.999964e-01	ci left: 4.065952e-04	ci right 4.980417e-04	k: 383	n:850000
PABPC3   850000 perm   508 sec   (1673 perm/sec)   p_kst 4.505882e-04   p_cons 1.192729e-01   p_joint 5.635294e-04

Joint ci ratio: 1.823258e-01	ci left: 4.882356e-04	ci right 5.872720e-04	k: 461	n:860000
Cons ci ratio: 1.148575e-02	ci left: 1.186006e-01	ci right 1.199718e-01	k: 102585	n:860000
KS ci ratio: 1.981977e-01	ci left: 4.096012e-04	ci right 5.007952e-04	k: 390	n:860000
PABPC3   860000 perm   518 sec   (1662 perm/sec)   p_kst 4.534884e-04   p_cons 1.192849e-01   p_joint 5.360465e-04

Joint ci ratio: 1.815417e-01	ci left: 4.870120e-04	ci right 5.853286e-04	k: 465	n:870000
Cons ci ratio: 1.141898e-02	ci left: 1.186150e-01	ci right 1.199784e-01	k: 103787	n:870000
KS ci ratio: 1.974419e-01	ci left: 4.081706e-04	ci right 4.986578e-04	k: 393	n:870000
PABPC3   870000 perm   527 sec   (1650 perm/sec)   p_kst 4.517241e-04   p_cons 1.192954e-01   p_joint 5.344828e-04

Joint ci ratio: 1.807677e-01	ci left: 4.858170e-04	ci right 5.834285e-04	k: 469	n:880000
Cons ci ratio: 1.135268e-02	ci left: 1.186416e-01	ci right 1.199973e-01	k: 105000	n:880000
KS ci ratio: 1.964473e-01	ci left: 4.078536e-04	ci right 4.977606e-04	k: 397	n:880000
PABPC3   880000 perm   537 sec   (1639 perm/sec)   p_kst 4.511364e-04   p_cons 1.193182e-01   p_joint 5.329545e-04

Joint ci ratio: 1.796248e-01	ci left: 4.867959e-04	ci right 5.839185e-04	k: 475	n:890000
Cons ci ratio: 1.128867e-02	ci left: 1.186463e-01	ci right 1.199944e-01	k: 106194	n:890000
KS ci ratio: 1.952248e-01	ci left: 4.086135e-04	ci right 4.980608e-04	k: 402	n:890000
PABPC3   890000 perm   546 sec   (1629 perm/sec)   p_kst 4.516854e-04   p_cons 1.193191e-01   p_joint 5.337079e-04

Joint ci ratio: 1.786887e-01	ci left: 4.866935e-04	ci right 5.832349e-04	k: 480	n:900000
Cons ci ratio: 1.122378e-02	ci left: 1.186875e-01	ci right 1.200283e-01	k: 107421	n:900000
KS ci ratio: 1.937874e-01	ci left: 4.104154e-04	ci right 4.995177e-04	k: 408	n:900000
PABPC3   900000 perm   556 sec   (1618 perm/sec)   p_kst 4.533333e-04   p_cons 1.193567e-01   p_joint 5.333333e-04

Joint ci ratio: 1.770398e-01	ci left: 4.907951e-04	ci right 5.871556e-04	k: 489	n:910000
Cons ci ratio: 1.116215e-02	ci left: 1.186873e-01	ci right 1.200206e-01	k: 108611	n:910000
KS ci ratio: 1.926136e-01	ci left: 4.111341e-04	ci right 4.997884e-04	k: 413	n:910000
PABPC3   910000 perm   566 sec   (1607 perm/sec)   p_kst 4.538462e-04   p_cons 1.193527e-01   p_joint 5.373626e-04

Joint ci ratio: 1.765005e-01	ci left: 4.885770e-04	ci right 5.841785e-04	k: 492	n:920000
Cons ci ratio: 1.110261e-02	ci left: 1.186665e-01	ci right 1.199924e-01	k: 109782	n:920000
KS ci ratio: 1.923817e-01	ci left: 4.076998e-04	ci right 4.954953e-04	k: 414	n:920000
PABPC3   920000 perm   576 sec   (1597 perm/sec)   p_kst 4.500000e-04   p_cons 1.193283e-01   p_joint 5.347826e-04

Joint ci ratio: 1.742177e-01	ci left: 4.966886e-04	ci right 5.924882e-04	k: 505	n:930000
Cons ci ratio: 1.104277e-02	ci left: 1.186698e-01	ci right 1.199885e-01	k: 110975	n:930000
KS ci ratio: 1.912331e-01	ci left: 4.084341e-04	ci right 4.958016e-04	k: 419	n:930000
PABPC3   930000 perm   586 sec   (1587 perm/sec)   p_kst 4.505376e-04   p_cons 1.193280e-01   p_joint 5.430108e-04

Joint ci ratio: 1.731939e-01	ci left: 4.975102e-04	ci right 5.928453e-04	k: 511	n:940000
Cons ci ratio: 1.098106e-02	ci left: 1.187271e-01	ci right 1.200391e-01	k: 112219	n:940000
KS ci ratio: 1.903290e-01	ci left: 4.081411e-04	ci right 4.949854e-04	k: 423	n:940000
PABPC3   940000 perm   596 sec   (1576 perm/sec)   p_kst 4.500000e-04   p_cons 1.193819e-01   p_joint 5.436170e-04

Joint ci ratio: 1.723544e-01	ci left: 4.973088e-04	ci right 5.920954e-04	k: 516	n:950000
Cons ci ratio: 1.092349e-02	ci left: 1.187234e-01	ci right 1.200284e-01	k: 113406	n:950000
KS ci ratio: 1.896594e-01	ci left: 4.068526e-04	ci right 4.930830e-04	k: 426	n:950000
PABPC3   950000 perm   607 sec   (1566 perm/sec)   p_kst 4.484211e-04   p_cons 1.193747e-01   p_joint 5.431579e-04

Joint ci ratio: 1.715270e-01	ci left: 4.971127e-04	ci right 5.913600e-04	k: 521	n:960000
Cons ci ratio: 1.086719e-02	ci left: 1.187125e-01	ci right 1.200106e-01	k: 114586	n:960000
KS ci ratio: 1.889967e-01	ci left: 4.055914e-04	ci right 4.912197e-04	k: 429	n:960000
PABPC3   960000 perm   617 sec   (1556 perm/sec)   p_kst 4.468750e-04   p_cons 1.193604e-01   p_joint 5.427083e-04

Joint ci ratio: 1.707114e-01	ci left: 4.969217e-04	ci right 5.906387e-04	k: 526	n:970000
Cons ci ratio: 1.081249e-02	ci left: 1.186875e-01	ci right 1.199787e-01	k: 115752	n:970000
KS ci ratio: 1.876917e-01	ci left: 4.073040e-04	ci right 4.926324e-04	k: 435	n:970000
PABPC3   970000 perm   628 sec   (1546 perm/sec)   p_kst 4.484536e-04   p_cons 1.193320e-01   p_joint 5.422680e-04

Joint ci ratio: 1.718577e-01	ci left: 4.850141e-04	ci right 5.771633e-04	k: 519	n:980000
Cons ci ratio: 1.075861e-02	ci left: 1.186629e-01	ci right 1.199475e-01	k: 116918	n:980000
KS ci ratio: 1.862026e-01	ci left: 4.099565e-04	ci right 4.950823e-04	k: 442	n:980000
PABPC3   980000 perm   638 sec   (1536 perm/sec)   p_kst 4.510204e-04   p_cons 1.193041e-01   p_joint 5.295918e-04

Joint ci ratio: 1.779543e-01	ci left: 4.463079e-04	ci right 5.344352e-04	k: 484	n:990000
Cons ci ratio: 1.070625e-02	ci left: 1.186248e-01	ci right 1.199027e-01	k: 118070	n:990000
KS ci ratio: 1.845434e-01	ci left: 4.135214e-04	ci right 4.985367e-04	k: 450	n:990000
PABPC3   990000 perm   649 sec   (1526 perm/sec)   p_kst 4.545455e-04   p_cons 1.192626e-01   p_joint 4.888889e-04

Joint ci ratio: 1.772251e-01	ci left: 4.456670e-04	ci right 5.332685e-04	k: 488	n:1000000
Cons ci ratio: 1.065261e-02	ci left: 1.186274e-01	ci right 1.198988e-01	k: 119262	n:1000000
KS ci ratio: 1.833279e-01	ci left: 4.151100e-04	ci right 4.998273e-04	k: 456	n:1000000
PABPC3   1000000 perm   660 sec   (1516 perm/sec)   p_kst 4.560000e-04   p_cons 1.192620e-01   p_joint 4.880000e-04

Joint ci ratio: 1.775892e-01	ci left: 4.393620e-04	ci right 5.259208e-04	k: 486	n:1010000
Cons ci ratio: 1.059658e-02	ci left: 1.186931e-01	ci right 1.199585e-01	k: 120518	n:1010000
KS ci ratio: 1.827292e-01	ci left: 4.138341e-04	ci right 4.979847e-04	k: 459	n:1010000
PABPC3   1010000 perm   670 sec   (1506 perm/sec)   p_kst 4.544554e-04   p_cons 1.193248e-01   p_joint 4.811881e-04

Joint ci ratio: 1.775897e-01	ci left: 4.350545e-04	ci right 5.207648e-04	k: 486	n:1020000
Cons ci ratio: 1.054285e-02	ci left: 1.187293e-01	ci right 1.199886e-01	k: 121745	n:1020000
KS ci ratio: 1.813543e-01	ci left: 4.163270e-04	ci right 5.002776e-04	k: 466	n:1020000
PABPC3   1020000 perm   681 sec   (1497 perm/sec)   p_kst 4.568627e-04   p_cons 1.193578e-01   p_joint 4.764706e-04

Joint ci ratio: 1.770453e-01	ci left: 4.336140e-04	ci right 5.187506e-04	k: 489	n:1030000
Cons ci ratio: 1.049022e-02	ci left: 1.187589e-01	ci right 1.200122e-01	k: 122966	n:1030000
KS ci ratio: 1.802003e-01	ci left: 4.178467e-04	ci right 5.015091e-04	k: 472	n:1030000
PABPC3   1030000 perm   692 sec   (1488 perm/sec)   p_kst 4.582524e-04   p_cons 1.193845e-01   p_joint 4.747573e-04

Joint ci ratio: 1.772268e-01	ci left: 4.285256e-04	ci right 5.127586e-04	k: 488	n:1040000
Cons ci ratio: 1.043942e-02	ci left: 1.187668e-01	ci right 1.200141e-01	k: 124165	n:1040000
KS ci ratio: 1.794432e-01	ci left: 4.175020e-04	ci right 5.007060e-04	k: 476	n:1040000
PABPC3   1040000 perm   703 sec   (1479 perm/sec)   p_kst 4.576923e-04   p_cons 1.193894e-01   p_joint 4.692308e-04

Joint ci ratio: 1.754415e-01	ci left: 4.335480e-04	ci right 5.178188e-04	k: 498	n:1050000
Cons ci ratio: 1.039038e-02	ci left: 1.187537e-01	ci right 1.199950e-01	k: 125342	n:1050000
KS ci ratio: 1.785100e-01	ci left: 4.180743e-04	ci right 5.009123e-04	k: 481	n:1050000
PABPC3   1050000 perm   715 sec   (1469 perm/sec)   p_kst 4.580952e-04   p_cons 1.193733e-01   p_joint 4.742857e-04

Joint ci ratio: 1.803924e-01	ci left: 4.051198e-04	ci right 4.863298e-04	k: 471	n:1060000
Cons ci ratio: 1.034329e-02	ci left: 1.187155e-01	ci right 1.199507e-01	k: 126492	n:1060000
KS ci ratio: 1.777740e-01	ci left: 4.177356e-04	ci right 5.001284e-04	k: 485	n:1060000
PABPC3   1060000 perm   726 sec   (1461 perm/sec)   p_kst 4.575472e-04   p_cons 1.193321e-01   p_joint 4.443396e-04

Joint ci ratio: 1.796329e-01	ci left: 4.049035e-04	ci right 4.856913e-04	k: 475	n:1070000
Cons ci ratio: 1.029559e-02	ci left: 1.187032e-01	ci right 1.199325e-01	k: 127669	n:1070000
KS ci ratio: 1.772279e-01	ci left: 4.165106e-04	ci right 4.983825e-04	k: 488	n:1070000
PABPC3   1070000 perm   737 sec   (1452 perm/sec)   p_kst 4.560748e-04   p_cons 1.193168e-01   p_joint 4.439252e-04

Joint ci ratio: 1.809694e-01	ci left: 3.949652e-04	ci right 4.744207e-04	k: 468	n:1080000
Cons ci ratio: 1.024592e-02	ci left: 1.187447e-01	ci right 1.199685e-01	k: 128904	n:1080000
KS ci ratio: 1.766869e-01	ci left: 4.153088e-04	ci right 4.966686e-04	k: 491	n:1080000
PABPC3   1080000 perm   748 sec   (1443 perm/sec)   p_kst 4.546296e-04   p_cons 1.193556e-01   p_joint 4.333333e-04

Joint ci ratio: 1.885636e-01	ci left: 3.589654e-04	ci right 4.345565e-04	k: 431	n:1090000
Cons ci ratio: 1.019884e-02	ci left: 1.187470e-01	ci right 1.199651e-01	k: 130097	n:1090000
KS ci ratio: 1.757959e-01	ci left: 4.158834e-04	ci right 4.969013e-04	k: 496	n:1090000
PABPC3   1090000 perm   760 sec   (1435 perm/sec)   p_kst 4.550459e-04   p_cons 1.193550e-01   p_joint 3.954128e-04

Joint ci ratio: 1.872675e-01	ci left: 3.609001e-04	ci right 4.363167e-04	k: 437	n:1100000
Cons ci ratio: 1.015253e-02	ci left: 1.187465e-01	ci right 1.199591e-01	k: 131287	n:1100000
KS ci ratio: 1.740531e-01	ci left: 4.207957e-04	ci right 5.018724e-04	k: 506	n:1100000
PABPC3   1100000 perm   771 sec   (1427 perm/sec)   p_kst 4.600000e-04   p_cons 1.193518e-01   p_joint 3.972727e-04

Joint ci ratio: 1.864182e-01	ci left: 3.610838e-04	ci right 4.361579e-04	k: 441	n:1110000
Cons ci ratio: 1.010672e-02	ci left: 1.187488e-01	ci right 1.199559e-01	k: 132480	n:1110000
KS ci ratio: 1.733706e-01	ci left: 4.204516e-04	ci right 5.011112e-04	k: 510	n:1110000
PABPC3   1110000 perm   783 sec   (1418 perm/sec)   p_kst 4.594595e-04   p_cons 1.193514e-01   p_joint 3.972973e-04

Joint ci ratio: 1.864185e-01	ci left: 3.578598e-04	ci right 4.322637e-04	k: 441	n:1120000
Cons ci ratio: 1.006323e-02	ci left: 1.187154e-01	ci right 1.199169e-01	k: 133633	n:1120000
KS ci ratio: 1.721950e-01	ci left: 4.226774e-04	ci right 5.031569e-04	k: 517	n:1120000
PABPC3   1120000 perm   794 sec   (1410 perm/sec)   p_kst 4.616071e-04   p_cons 1.193152e-01   p_joint 3.937500e-04

Joint ci ratio: 1.933241e-01	ci left: 3.285623e-04	ci right 3.997034e-04	k: 410	n:1130000
Cons ci ratio: 1.002017e-02	ci left: 1.186852e-01	ci right 1.198813e-01	k: 134789	n:1130000
KS ci ratio: 1.712062e-01	ci left: 4.240184e-04	ci right 5.042419e-04	k: 523	n:1130000
PABPC3   1130000 perm   806 sec   (1403 perm/sec)   p_kst 4.628319e-04   p_cons 1.192823e-01   p_joint 3.628319e-04

Joint ci ratio: 1.517385e-01	ci left: 5.406896e-04	ci right 6.303005e-04	k: 666	n:1140000
Cons ci ratio: 9.975996e-03	ci left: 1.186906e-01	ci right 1.198815e-01	k: 135985	n:1140000
KS ci ratio: 1.700738e-01	ci left: 4.261771e-04	ci right 5.062210e-04	k: 530	n:1140000
PABPC3   1140000 perm   818 sec   (1394 perm/sec)   p_kst 4.649123e-04   p_cons 1.192851e-01   p_joint 5.842105e-04

Joint ci ratio: 1.537115e-01	ci left: 5.217698e-04	ci right 6.094730e-04	k: 649	n:1150000
Cons ci ratio: 9.935072e-03	ci left: 1.186396e-01	ci right 1.198250e-01	k: 137116	n:1150000
KS ci ratio: 1.692787e-01	ci left: 4.266344e-04	ci right 5.063514e-04	k: 535	n:1150000
PABPC3   1150000 perm   829 sec   (1386 perm/sec)   p_kst 4.652174e-04   p_cons 1.192313e-01   p_joint 5.643478e-04

Joint ci ratio: 1.545468e-01	ci left: 5.114698e-04	ci right 5.979522e-04	k: 642	n:1160000
Cons ci ratio: 9.892006e-03	ci left: 1.186453e-01	ci right 1.198256e-01	k: 138312	n:1160000
KS ci ratio: 1.677210e-01	ci left: 4.312138e-04	ci right 5.109700e-04	k: 545	n:1160000
PABPC3   1160000 perm   842 sec   (1378 perm/sec)   p_kst 4.698276e-04   p_cons 1.192345e-01   p_joint 5.534483e-04

Joint ci ratio: 1.539494e-01	ci left: 5.112069e-04	ci right 5.972798e-04	k: 647	n:1170000
Cons ci ratio: 9.848614e-03	ci left: 1.186697e-01	ci right 1.198450e-01	k: 139530	n:1170000
KS ci ratio: 1.671100e-01	ci left: 4.308038e-04	ci right 5.101647e-04	k: 549	n:1170000
PABPC3   1170000 perm   854 sec   (1371 perm/sec)   p_kst 4.692308e-04   p_cons 1.192564e-01   p_joint 5.529915e-04

Joint ci ratio: 1.537126e-01	ci left: 5.085042e-04	ci right 5.939783e-04	k: 649	n:1180000
Cons ci ratio: 9.808003e-03	ci left: 1.186463e-01	ci right 1.198166e-01	k: 140692	n:1180000
KS ci ratio: 1.668072e-01	ci left: 4.287769e-04	ci right 5.076070e-04	k: 551	n:1180000
PABPC3   1180000 perm   866 sec   (1363 perm/sec)   p_kst 4.669492e-04   p_cons 1.192305e-01   p_joint 5.500000e-04

Joint ci ratio: 1.550311e-01	ci left: 4.953442e-04	ci right 5.793867e-04	k: 638	n:1190000
Cons ci ratio: 9.768908e-03	ci left: 1.186016e-01	ci right 1.197667e-01	k: 141828	n:1190000
KS ci ratio: 1.665060e-01	ci left: 4.267843e-04	ci right 5.050921e-04	k: 553	n:1190000
PABPC3   1190000 perm   878 sec   (1356 perm/sec)   p_kst 4.647059e-04   p_cons 1.191832e-01   p_joint 5.361345e-04

Joint ci ratio: 2.244299e-01	ci left: 2.256561e-04	ci right 2.834677e-04	k: 304	n:1200000
Cons ci ratio: 9.728267e-03	ci left: 1.186008e-01	ci right 1.197610e-01	k: 143016	n:1200000
KS ci ratio: 1.577726e-01	ci left: 4.736000e-04	ci right 5.555088e-04	k: 616	n:1200000
PABPC3   1200000 perm   890 sec   (1348 perm/sec)   p_kst 5.133333e-04   p_cons 1.191800e-01   p_joint 2.533333e-04

Joint ci ratio: 2.233342e-01	ci left: 2.261315e-04	ci right 2.837432e-04	k: 307	n:1210000
Cons ci ratio: 9.687443e-03	ci left: 1.186149e-01	ci right 1.197704e-01	k: 144222	n:1210000
KS ci ratio: 1.573906e-01	ci left: 4.720675e-04	ci right 5.534949e-04	k: 619	n:1210000
PABPC3   1210000 perm   902 sec   (1341 perm/sec)   p_kst 5.115702e-04   p_cons 1.191917e-01   p_joint 2.537190e-04

Joint ci ratio: 2.226127e-01	ci left: 2.258257e-04	ci right 2.831481e-04	k: 309	n:1220000
Cons ci ratio: 9.645585e-03	ci left: 1.186623e-01	ci right 1.198132e-01	k: 145469	n:1220000
KS ci ratio: 1.565094e-01	ci left: 4.737105e-04	ci right 5.549209e-04	k: 626	n:1220000
PABPC3   1220000 perm   915 sec   (1334 perm/sec)   p_kst 5.131148e-04   p_cons 1.192369e-01   p_joint 2.532787e-04

Joint ci ratio: 2.218981e-01	ci left: 2.255252e-04	ci right 2.825625e-04	k: 311	n:1230000
Cons ci ratio: 9.604042e-03	ci left: 1.187139e-01	ci right 1.198603e-01	k: 146722	n:1230000
KS ci ratio: 1.560126e-01	ci left: 4.729840e-04	ci right 5.537884e-04	k: 630	n:1230000
PABPC3   1230000 perm   927 sec   (1326 perm/sec)   p_kst 5.121951e-04   p_cons 1.192862e-01   p_joint 2.528455e-04

Joint ci ratio: 2.215434e-01	ci left: 2.244681e-04	ci right 2.811350e-04	k: 312	n:1240000
Cons ci ratio: 9.563324e-03	ci left: 1.187581e-01	ci right 1.199001e-01	k: 147967	n:1240000
KS ci ratio: 1.553982e-01	ci left: 4.730448e-04	ci right 5.535116e-04	k: 635	n:1240000
PABPC3   1240000 perm   940 sec   (1319 perm/sec)   p_kst 5.120968e-04   p_cons 1.193282e-01   p_joint 2.516129e-04

Joint ci ratio: 2.329933e-01	ci left: 2.000375e-04	ci right 2.535232e-04	k: 282	n:1250000
Cons ci ratio: 9.525512e-03	ci left: 1.187490e-01	ci right 1.198864e-01	k: 149146	n:1250000
KS ci ratio: 1.541904e-01	ci left: 4.769506e-04	ci right 5.573931e-04	k: 645	n:1250000
PABPC3   1250000 perm   953 sec   (1312 perm/sec)   p_kst 5.160000e-04   p_cons 1.193168e-01   p_joint 2.256000e-04

Joint ci ratio: 1.668097e-01	ci left: 4.015525e-04	ci right 4.753786e-04	k: 551	n:1260000
Cons ci ratio: 9.488217e-03	ci left: 1.187385e-01	ci right 1.198712e-01	k: 150323	n:1260000
KS ci ratio: 1.537153e-01	ci left: 4.762176e-04	ci right 5.562661e-04	k: 649	n:1260000
PABPC3   1260000 perm   966 sec   (1305 perm/sec)   p_kst 5.150794e-04   p_cons 1.193040e-01   p_joint 4.373016e-04

Joint ci ratio: 1.659103e-01	ci left: 4.029184e-04	ci right 4.765564e-04	k: 557	n:1270000
Cons ci ratio: 9.449621e-03	ci left: 1.187666e-01	ci right 1.198950e-01	k: 151549	n:1270000
KS ci ratio: 1.526618e-01	ci left: 4.792829e-04	ci right 5.592441e-04	k: 658	n:1270000
PABPC3   1270000 perm   979 sec   (1298 perm/sec)   p_kst 5.181102e-04   p_cons 1.193299e-01   p_joint 4.385827e-04

Joint ci ratio: 1.656139e-01	ci left: 4.012683e-04	ci right 4.744606e-04	k: 559	n:1280000
Cons ci ratio: 9.413067e-03	ci left: 1.187592e-01	ci right 1.198831e-01	k: 152730	n:1280000
KS ci ratio: 1.518573e-01	ci left: 4.807989e-04	ci right 5.605519e-04	k: 665	n:1280000
PABPC3   1280000 perm   992 sec   (1291 perm/sec)   p_kst 5.195313e-04   p_cons 1.193203e-01   p_joint 4.367187e-04

Joint ci ratio: 1.669619e-01	ci left: 3.914711e-04	ci right 4.635160e-04	k: 550	n:1290000
Cons ci ratio: 9.378456e-03	ci left: 1.187179e-01	ci right 1.198373e-01	k: 153867	n:1290000
KS ci ratio: 1.517437e-01	ci left: 4.778175e-04	ci right 5.570112e-04	k: 666	n:1290000
PABPC3   1290000 perm   1005 sec   (1284 perm/sec)   p_kst 5.162791e-04   p_cons 1.192767e-01   p_joint 4.263566e-04

Joint ci ratio: 1.665093e-01	ci left: 3.906712e-04	ci right 4.623544e-04	k: 553	n:1300000
Cons ci ratio: 9.342307e-03	ci left: 1.187202e-01	ci right 1.198353e-01	k: 155060	n:1300000
KS ci ratio: 1.515169e-01	ci left: 4.756220e-04	ci right 5.543233e-04	k: 668	n:1300000
PABPC3   1300000 perm   1018 sec   (1277 perm/sec)   p_kst 5.138462e-04   p_cons 1.192769e-01   p_joint 4.253846e-04

Joint ci ratio: 1.659114e-01	ci left: 3.906154e-04	ci right 4.620053e-04	k: 557	n:1310000
Cons ci ratio: 9.305492e-03	ci left: 1.187469e-01	ci right 1.198578e-01	k: 156285	n:1310000
KS ci ratio: 1.509539e-01	ci left: 4.756637e-04	ci right 5.540530e-04	k: 673	n:1310000
PABPC3   1310000 perm   1031 sec   (1270 perm/sec)   p_kst 5.137405e-04   p_cons 1.193015e-01   p_joint 4.251908e-04

Joint ci ratio: 1.654673e-01	ci left: 3.898347e-04	ci right 4.608721e-04	k: 560	n:1320000
Cons ci ratio: 9.272250e-03	ci left: 1.187021e-01	ci right 1.198086e-01	k: 157416	n:1320000
KS ci ratio: 1.505080e-01	ci left: 4.749762e-04	ci right 5.530001e-04	k: 677	n:1320000
PABPC3   1320000 perm   1044 sec   (1264 perm/sec)   p_kst 5.128788e-04   p_cons 1.192545e-01   p_joint 4.242424e-04

Joint ci ratio: 1.681889e-01	ci left: 3.739345e-04	ci right 4.433089e-04	k: 542	n:1330000
Cons ci ratio: 9.237246e-03	ci left: 1.187061e-01	ci right 1.198084e-01	k: 158611	n:1330000
KS ci ratio: 1.500660e-01	ci left: 4.742993e-04	ci right 5.519628e-04	k: 681	n:1330000
PABPC3   1330000 perm   1058 sec   (1258 perm/sec)   p_kst 5.120301e-04   p_cons 1.192564e-01   p_joint 4.075188e-04

Joint ci ratio: 1.671150e-01	ci left: 3.761487e-04	ci right 4.454435e-04	k: 549	n:1340000
Cons ci ratio: 9.201000e-03	ci left: 1.187472e-01	ci right 1.198455e-01	k: 159856	n:1340000
KS ci ratio: 1.493017e-01	ci left: 4.757881e-04	ci right 5.532630e-04	k: 688	n:1340000
PABPC3   1340000 perm   1071 sec   (1251 perm/sec)   p_kst 5.134328e-04   p_cons 1.192955e-01   p_joint 4.097015e-04

Joint ci ratio: 1.722018e-01	ci left: 3.506645e-04	ci right 4.174354e-04	k: 517	n:1350000
Cons ci ratio: 9.165985e-03	ci left: 1.187692e-01	ci right 1.198636e-01	k: 161076	n:1350000
KS ci ratio: 1.485489e-01	ci left: 4.772557e-04	ci right 5.545430e-04	k: 695	n:1350000
PABPC3   1350000 perm   1084 sec   (1245 perm/sec)   p_kst 5.148148e-04   p_cons 1.193156e-01   p_joint 3.829630e-04

Joint ci ratio: 1.732085e-01	ci left: 3.438649e-04	ci right 4.097639e-04	k: 511	n:1360000
Cons ci ratio: 9.132326e-03	ci left: 1.187689e-01	ci right 1.198592e-01	k: 162266	n:1360000
KS ci ratio: 1.475974e-01	ci left: 4.801190e-04	ci right 5.573281e-04	k: 704	n:1360000
PABPC3   1360000 perm   1098 sec   (1239 perm/sec)   p_kst 5.176471e-04   p_cons 1.193132e-01   p_joint 3.757353e-04

Joint ci ratio: 1.725358e-01	ci left: 3.441484e-04	ci right 4.098188e-04	k: 515	n:1370000
Cons ci ratio: 9.099667e-03	ci left: 1.187540e-01	ci right 1.198403e-01	k: 163436	n:1370000
KS ci ratio: 1.470768e-01	ci left: 4.801296e-04	ci right 5.570441e-04	k: 709	n:1370000
PABPC3   1370000 perm   1111 sec   (1233 perm/sec)   p_kst 5.175182e-04   p_cons 1.192964e-01   p_joint 3.759124e-04

Joint ci ratio: 1.730400e-01	ci left: 3.395746e-04	ci right 4.045814e-04	k: 512	n:1380000
Cons ci ratio: 9.067261e-03	ci left: 1.187415e-01	ci right 1.198238e-01	k: 164609	n:1380000
KS ci ratio: 1.465617e-01	ci left: 4.801405e-04	ci right 5.567637e-04	k: 714	n:1380000
PABPC3   1380000 perm   1125 sec   (1227 perm/sec)   p_kst 5.173913e-04   p_cons 1.192819e-01   p_joint 3.710145e-04

Joint ci ratio: 1.735486e-01	ci left: 3.350668e-04	ci right 3.994190e-04	k: 509	n:1390000
Cons ci ratio: 9.033282e-03	ci left: 1.187738e-01	ci right 1.198523e-01	k: 165844	n:1390000
KS ci ratio: 1.459505e-01	ci left: 4.808448e-04	ci right 5.572326e-04	k: 720	n:1390000
PABPC3   1390000 perm   1139 sec   (1221 perm/sec)   p_kst 5.179856e-04   p_cons 1.193122e-01   p_joint 3.661871e-04

Joint ci ratio: 1.722030e-01	ci left: 3.381406e-04	ci right 4.025272e-04	k: 517	n:1400000
Cons ci ratio: 9.000416e-03	ci left: 1.187885e-01	ci right 1.198631e-01	k: 167055	n:1400000
KS ci ratio: 1.452470e-01	ci left: 4.822281e-04	ci right 5.584344e-04	k: 727	n:1400000
PABPC3   1400000 perm   1153 sec   (1214 perm/sec)   p_kst 5.192857e-04   p_cons 1.193250e-01   p_joint 3.692857e-04

Joint ci ratio: 1.718716e-01	ci left: 3.370998e-04	ci right 4.011519e-04	k: 519	n:1410000
Cons ci ratio: 8.966938e-03	ci left: 1.188256e-01	ci right 1.198966e-01	k: 168298	n:1410000
KS ci ratio: 1.448497e-01	ci left: 4.815419e-04	ci right 5.574136e-04	k: 731	n:1410000
PABPC3   1410000 perm   1167 sec   (1208 perm/sec)   p_kst 5.184397e-04   p_cons 1.193603e-01   p_joint 3.680851e-04

Joint ci ratio: 1.712143e-01	ci left: 3.374218e-04	ci right 4.012646e-04	k: 523	n:1420000
Cons ci ratio: 8.937093e-03	ci left: 1.187856e-01	ci right 1.198526e-01	k: 169432	n:1420000
KS ci ratio: 1.447511e-01	ci left: 4.788295e-04	ci right 5.542179e-04	k: 732	n:1420000
PABPC3   1420000 perm   1181 sec   (1202 perm/sec)   p_kst 5.154930e-04   p_cons 1.193183e-01   p_joint 3.683099e-04

Joint ci ratio: 1.702423e-01	ci left: 3.390788e-04	ci right 4.028335e-04	k: 529	n:1430000
Cons ci ratio: 8.904225e-03	ci left: 1.188243e-01	ci right 1.198877e-01	k: 170678	n:1430000
KS ci ratio: 1.444559e-01	ci left: 4.775030e-04	ci right 5.525161e-04	k: 735	n:1430000
PABPC3   1430000 perm   1195 sec   (1196 perm/sec)   p_kst 5.139860e-04   p_cons 1.193552e-01   p_joint 3.699301e-04

Joint ci ratio: 1.722039e-01	ci left: 3.287477e-04	ci right 3.913461e-04	k: 517	n:1440000
Cons ci ratio: 8.872772e-03	ci left: 1.188375e-01	ci right 1.198973e-01	k: 171888	n:1440000
KS ci ratio: 1.442602e-01	ci left: 4.755257e-04	ci right 5.501182e-04	k: 737	n:1440000
PABPC3   1440000 perm   1209 sec   (1191 perm/sec)   p_kst 5.118056e-04   p_cons 1.193667e-01   p_joint 3.590278e-04

Joint ci ratio: 1.718725e-01	ci left: 3.278003e-04	ci right 3.900858e-04	k: 519	n:1450000
Cons ci ratio: 8.842752e-03	ci left: 1.188244e-01	ci right 1.198805e-01	k: 173060	n:1450000
KS ci ratio: 1.437740e-01	ci left: 4.755702e-04	ci right 5.498967e-04	k: 742	n:1450000
PABPC3   1450000 perm   1224 sec   (1185 perm/sec)   p_kst 5.117241e-04   p_cons 1.193517e-01   p_joint 3.579310e-04

Joint ci ratio: 1.707270e-01	ci left: 3.301441e-04	ci right 3.924138e-04	k: 526	n:1460000
Cons ci ratio: 8.812460e-03	ci left: 1.188252e-01	ci right 1.198777e-01	k: 174252	n:1460000
KS ci ratio: 1.431969e-01	ci left: 4.762750e-04	ci right 5.503873e-04	k: 748	n:1460000
PABPC3   1460000 perm   1238 sec   (1179 perm/sec)   p_kst 5.123288e-04   p_cons 1.193507e-01   p_joint 3.602740e-04

Joint ci ratio: 1.710522e-01	ci left: 3.265959e-04	ci right 3.883257e-04	k: 524	n:1470000
Cons ci ratio: 8.782136e-03	ci left: 1.188341e-01	ci right 1.198830e-01	k: 175456	n:1470000
KS ci ratio: 1.430062e-01	ci left: 4.743468e-04	ci right 5.480525e-04	k: 750	n:1470000
PABPC3   1470000 perm   1253 sec   (1173 perm/sec)   p_kst 5.102041e-04   p_cons 1.193578e-01   p_joint 3.564626e-04

Joint ci ratio: 1.700829e-01	ci left: 3.282701e-04	ci right 3.899288e-04	k: 530	n:1480000
Cons ci ratio: 8.752912e-03	ci left: 1.188240e-01	ci right 1.198693e-01	k: 176632	n:1480000
KS ci ratio: 1.419700e-01	ci left: 4.783093e-04	ci right 5.520465e-04	k: 761	n:1480000
PABPC3   1480000 perm   1268 sec   (1168 perm/sec)   p_kst 5.141892e-04   p_cons 1.193459e-01   p_joint 3.581081e-04

Joint ci ratio: 1.697636e-01	ci left: 3.273522e-04	ci right 3.887112e-04	k: 532	n:1490000
Cons ci ratio: 8.722194e-03	ci left: 1.188570e-01	ci right 1.198989e-01	k: 177872	n:1490000
KS ci ratio: 1.415989e-01	ci left: 4.776885e-04	ci right 5.511213e-04	k: 765	n:1490000
PABPC3   1490000 perm   1282 sec   (1162 perm/sec)   p_kst 5.134228e-04   p_cons 1.193772e-01   p_joint 3.570470e-04

Joint ci ratio: 1.441640e-01	ci left: 4.571470e-04	ci right 5.288046e-04	k: 738	n:1500000
Cons ci ratio: 8.692487e-03	ci left: 1.188728e-01	ci right 1.199113e-01	k: 179087	n:1500000
KS ci ratio: 1.407741e-01	ci left: 4.802920e-04	ci right 5.536589e-04	k: 774	n:1500000
PABPC3   1500000 perm   1297 sec   (1157 perm/sec)   p_kst 5.160000e-04   p_cons 1.193913e-01   p_joint 4.920000e-04

Joint ci ratio: 1.436787e-01	ci left: 4.573115e-04	ci right 5.287330e-04	k: 743	n:1510000
Cons ci ratio: 8.663981e-03	ci left: 1.188667e-01	ci right 1.199017e-01	k: 180269	n:1510000
KS ci ratio: 1.400530e-01	ci left: 4.822232e-04	ci right 5.554762e-04	k: 782	n:1510000
PABPC3   1510000 perm   1312 sec   (1151 perm/sec)   p_kst 5.178808e-04   p_cons 1.193834e-01   p_joint 4.920530e-04

Joint ci ratio: 1.431028e-01	ci left: 4.581087e-04	ci right 5.293433e-04	k: 749	n:1520000
Cons ci ratio: 8.636186e-03	ci left: 1.188501e-01	ci right 1.198816e-01	k: 181435	n:1520000
KS ci ratio: 1.395194e-01	ci left: 4.828600e-04	ci right 5.559071e-04	k: 788	n:1520000
PABPC3   1520000 perm   1327 sec   (1146 perm/sec)   p_kst 5.184211e-04   p_cons 1.193651e-01   p_joint 4.927632e-04

Joint ci ratio: 1.425337e-01	ci left: 4.588959e-04	ci right 5.299452e-04	k: 755	n:1530000
Cons ci ratio: 8.607025e-03	ci left: 1.188735e-01	ci right 1.199018e-01	k: 182662	n:1530000
KS ci ratio: 1.393431e-01	ci left: 4.809656e-04	ci right 5.536265e-04	k: 790	n:1530000
PABPC3   1530000 perm   1342 sec   (1140 perm/sec)   p_kst 5.163399e-04   p_cons 1.193869e-01   p_joint 4.934641e-04

Joint ci ratio: 1.422519e-01	ci left: 4.577947e-04	ci right 5.285214e-04	k: 758	n:1540000
Cons ci ratio: 8.579694e-03	ci left: 1.188591e-01	ci right 1.198839e-01	k: 183831	n:1540000
KS ci ratio: 1.388175e-01	ci left: 4.816030e-04	ci right 5.540631e-04	k: 796	n:1540000
PABPC3   1540000 perm   1357 sec   (1135 perm/sec)   p_kst 5.168831e-04   p_cons 1.193708e-01   p_joint 4.922078e-04

Joint ci ratio: 1.420650e-01	ci left: 4.560856e-04	ci right 5.264478e-04	k: 760	n:1550000
Cons ci ratio: 8.552516e-03	ci left: 1.188474e-01	ci right 1.198688e-01	k: 185004	n:1550000
KS ci ratio: 1.384706e-01	ci left: 4.809870e-04	ci right 5.531586e-04	k: 800	n:1550000
PABPC3   1550000 perm   1372 sec   (1130 perm/sec)   p_kst 5.161290e-04   p_cons 1.193574e-01   p_joint 4.903226e-04

Joint ci ratio: 1.415082e-01	ci left: 4.568717e-04	ci right 5.270556e-04	k: 766	n:1560000
Cons ci ratio: 8.525647e-03	ci left: 1.188346e-01	ci right 1.198527e-01	k: 186175	n:1560000
KS ci ratio: 1.381261e-01	ci left: 4.803791e-04	ci right 5.522655e-04	k: 804	n:1560000
PABPC3   1560000 perm   1387 sec   (1125 perm/sec)   p_kst 5.153846e-04   p_cons 1.193429e-01   p_joint 4.910256e-04

Joint ci ratio: 1.410492e-01	ci left: 4.570339e-04	ci right 5.269958e-04	k: 771	n:1570000
Cons ci ratio: 8.498206e-03	ci left: 1.188423e-01	ci right 1.198572e-01	k: 187378	n:1570000
KS ci ratio: 1.378696e-01	ci left: 4.791642e-04	ci right 5.507247e-04	k: 807	n:1570000
PABPC3   1570000 perm   1402 sec   (1120 perm/sec)   p_kst 5.140127e-04   p_cons 1.193490e-01   p_joint 4.910828e-04

Joint ci ratio: 1.417863e-01	ci left: 4.492570e-04	ci right 5.184182e-04	k: 763	n:1580000
Cons ci ratio: 8.470824e-03	ci left: 1.188550e-01	ci right 1.198667e-01	k: 188589	n:1580000
KS ci ratio: 1.373605e-01	ci left: 4.797983e-04	ci right 5.511672e-04	k: 813	n:1580000
PABPC3   1580000 perm   1418 sec   (1114 perm/sec)   p_kst 5.145570e-04   p_cons 1.193601e-01   p_joint 4.829114e-04

Joint ci ratio: 1.415088e-01	ci left: 4.482514e-04	ci right 5.171114e-04	k: 766	n:1590000
Cons ci ratio: 8.445549e-03	ci left: 1.188217e-01	ci right 1.198300e-01	k: 189727	n:1590000
KS ci ratio: 1.369406e-01	ci left: 4.798174e-04	ci right 5.509533e-04	k: 818	n:1590000
PABPC3   1590000 perm   1433 sec   (1109 perm/sec)   p_kst 5.144654e-04   p_cons 1.193252e-01   p_joint 4.817610e-04

Joint ci ratio: 1.409585e-01	ci left: 4.490673e-04	ci right 5.177618e-04	k: 772	n:1600000
Cons ci ratio: 8.419072e-03	ci left: 1.188243e-01	ci right 1.198296e-01	k: 190922	n:1600000
KS ci ratio: 1.363590e-01	ci left: 4.810440e-04	ci right 5.520342e-04	k: 825	n:1600000
PABPC3   1600000 perm   1449 sec   (1104 perm/sec)   p_kst 5.156250e-04   p_cons 1.193262e-01   p_joint 4.825000e-04

Joint ci ratio: 1.403245e-01	ci left: 4.504729e-04	ci right 5.190466e-04	k: 779	n:1610000
Cons ci ratio: 8.393016e-03	ci left: 1.188226e-01	ci right 1.198247e-01	k: 192110	n:1610000
KS ci ratio: 1.358664e-01	ci left: 4.816560e-04	ci right 5.524590e-04	k: 831	n:1610000
PABPC3   1610000 perm   1465 sec   (1099 perm/sec)   p_kst 5.161491e-04   p_cons 1.193230e-01   p_joint 4.838509e-04

Joint ci ratio: 1.399661e-01	ci left: 4.500748e-04	ci right 5.183983e-04	k: 783	n:1620000
Cons ci ratio: 8.366930e-03	ci left: 1.188277e-01	ci right 1.198267e-01	k: 193309	n:1620000
KS ci ratio: 1.355410e-01	ci left: 4.810681e-04	ci right 5.516017e-04	k: 835	n:1620000
PABPC3   1620000 perm   1481 sec   (1094 perm/sec)   p_kst 5.154321e-04   p_cons 1.193265e-01   p_joint 4.833333e-04

Joint ci ratio: 1.393453e-01	ci left: 4.514580e-04	ci right 5.196623e-04	k: 790	n:1630000
Cons ci ratio: 8.339941e-03	ci left: 1.188615e-01	ci right 1.198576e-01	k: 194555	n:1630000
KS ci ratio: 1.348970e-01	ci left: 4.828587e-04	ci right 5.532915e-04	k: 843	n:1630000
PABPC3   1630000 perm   1496 sec   (1089 perm/sec)   p_kst 5.171779e-04   p_cons 1.193589e-01   p_joint 4.846626e-04

Joint ci ratio: 1.387327e-01	ci left: 4.528251e-04	ci right 5.209103e-04	k: 797	n:1640000
Cons ci ratio: 8.315020e-03	ci left: 1.188493e-01	ci right 1.198423e-01	k: 195726	n:1640000
KS ci ratio: 1.341833e-01	ci left: 4.852176e-04	ci right 5.555901e-04	k: 852	n:1640000
PABPC3   1640000 perm   1513 sec   (1084 perm/sec)   p_kst 5.195122e-04   p_cons 1.193451e-01   p_joint 4.859756e-04

Joint ci ratio: 1.383001e-01	ci left: 4.530060e-04	ci right 5.208885e-04	k: 802	n:1650000
Cons ci ratio: 8.288458e-03	ci left: 1.188844e-01	ci right 1.198745e-01	k: 196975	n:1650000
KS ci ratio: 1.336360e-01	ci left: 4.863772e-04	ci right 5.566073e-04	k: 859	n:1650000
PABPC3   1650000 perm   1528 sec   (1080 perm/sec)   p_kst 5.206061e-04   p_cons 1.193788e-01   p_joint 4.860606e-04

Joint ci ratio: 1.375313e-01	ci left: 4.555117e-04	ci right 5.233592e-04	k: 811	n:1660000
Cons ci ratio: 8.263734e-03	ci left: 1.188788e-01	ci right 1.198659e-01	k: 198157	n:1660000
KS ci ratio: 1.330954e-01	ci left: 4.875234e-04	ci right 5.576117e-04	k: 866	n:1660000
PABPC3   1660000 perm   1545 sec   (1075 perm/sec)   p_kst 5.216867e-04   p_cons 1.193717e-01   p_joint 4.885542e-04

Joint ci ratio: 1.371098e-01	ci left: 4.556752e-04	ci right 5.233221e-04	k: 816	n:1670000
Cons ci ratio: 8.238573e-03	ci left: 1.188900e-01	ci right 1.198742e-01	k: 199367	n:1670000
KS ci ratio: 1.328658e-01	ci left: 4.863408e-04	ci right 5.561289e-04	k: 869	n:1670000
PABPC3   1670000 perm   1561 sec   (1070 perm/sec)   p_kst 5.203593e-04   p_cons 1.193814e-01   p_joint 4.886228e-04

Joint ci ratio: 1.379573e-01	ci left: 4.472152e-04	ci right 5.140502e-04	k: 806	n:1680000
Cons ci ratio: 8.213874e-03	ci left: 1.188952e-01	ci right 1.198764e-01	k: 200567	n:1680000
KS ci ratio: 1.323344e-01	ci left: 4.874744e-04	ci right 5.571234e-04	k: 876	n:1680000
PABPC3   1680000 perm   1577 sec   (1065 perm/sec)   p_kst 5.214286e-04   p_cons 1.193851e-01   p_joint 4.797619e-04

Joint ci ratio: 1.377017e-01	ci left: 4.462828e-04	ci right 5.128448e-04	k: 809	n:1690000
Cons ci ratio: 8.189118e-03	ci left: 1.189073e-01	ci right 1.198857e-01	k: 201779	n:1690000
KS ci ratio: 1.321839e-01	ci left: 4.857341e-04	ci right 5.550494e-04	k: 878	n:1690000
PABPC3   1690000 perm   1594 sec   (1060 perm/sec)   p_kst 5.195266e-04   p_cons 1.193959e-01   p_joint 4.786982e-04

Joint ci ratio: 1.378723e-01	ci left: 4.425217e-04	ci right 5.086112e-04	k: 807	n:1700000
Cons ci ratio: 8.163809e-03	ci left: 1.189393e-01	ci right 1.199149e-01	k: 203025	n:1700000
KS ci ratio: 1.315863e-01	ci left: 4.874275e-04	ci right 5.566454e-04	k: 886	n:1700000
PABPC3   1700000 perm   1610 sec   (1056 perm/sec)   p_kst 5.211765e-04   p_cons 1.194265e-01   p_joint 4.747059e-04

Joint ci ratio: 1.375323e-01	ci left: 4.421924e-04	ci right 5.080566e-04	k: 811	n:1710000
Cons ci ratio: 8.140022e-03	ci left: 1.189377e-01	ci right 1.199104e-01	k: 204214	n:1710000
KS ci ratio: 1.312170e-01	ci left: 4.874049e-04	ci right 5.564102e-04	k: 891	n:1710000
PABPC3   1710000 perm   1627 sec   (1051 perm/sec)   p_kst 5.210526e-04   p_cons 1.194234e-01   p_joint 4.742690e-04

Joint ci ratio: 1.381295e-01	ci left: 4.356920e-04	ci right 5.008929e-04	k: 804	n:1720000
Cons ci ratio: 8.116756e-03	ci left: 1.189279e-01	ci right 1.198978e-01	k: 205389	n:1720000
KS ci ratio: 1.307051e-01	ci left: 4.885076e-04	ci right 5.573783e-04	k: 898	n:1720000
PABPC3   1720000 perm   1643 sec   (1047 perm/sec)   p_kst 5.220930e-04   p_cons 1.194122e-01   p_joint 4.674419e-04

Joint ci ratio: 1.384743e-01	ci left: 4.309413e-04	ci right 4.956055e-04	k: 800	n:1730000
Cons ci ratio: 8.093934e-03	ci left: 1.189120e-01	ci right 1.198789e-01	k: 206553	n:1730000
KS ci ratio: 1.303432e-01	ci left: 4.884797e-04	ci right 5.571409e-04	k: 903	n:1730000
PABPC3   1730000 perm   1660 sec   (1042 perm/sec)   p_kst 5.219653e-04   p_cons 1.193948e-01   p_joint 4.624277e-04

Joint ci ratio: 1.383018e-01	ci left: 4.295743e-04	ci right 4.939464e-04	k: 802	n:1740000
Cons ci ratio: 8.071567e-03	ci left: 1.188893e-01	ci right 1.198534e-01	k: 207705	n:1740000
KS ci ratio: 1.300558e-01	ci left: 4.878963e-04	ci right 5.563127e-04	k: 907	n:1740000
PABPC3   1740000 perm   1677 sec   (1038 perm/sec)   p_kst 5.212644e-04   p_cons 1.193707e-01   p_joint 4.609195e-04

Joint ci ratio: 1.377880e-01	ci left: 4.304297e-04	ci right 4.946708e-04	k: 808	n:1750000
Cons ci ratio: 8.048642e-03	ci left: 1.188863e-01	ci right 1.198476e-01	k: 208891	n:1750000
KS ci ratio: 1.294865e-01	ci left: 4.895314e-04	ci right 5.578535e-04	k: 915	n:1750000
PABPC3   1750000 perm   1694 sec   (1033 perm/sec)   p_kst 5.228571e-04   p_cons 1.193663e-01   p_joint 4.617143e-04

Joint ci ratio: 1.372798e-01	ci left: 4.312759e-04	ci right 4.953865e-04	k: 814	n:1760000
Cons ci ratio: 8.025975e-03	ci left: 1.188816e-01	ci right 1.198401e-01	k: 210074	n:1760000
KS ci ratio: 1.293455e-01	ci left: 4.878495e-04	ci right 5.558570e-04	k: 917	n:1760000
PABPC3   1760000 perm   1710 sec   (1029 perm/sec)   p_kst 5.210227e-04   p_cons 1.193602e-01   p_joint 4.625000e-04

Joint ci ratio: 1.366939e-01	ci left: 4.326586e-04	ci right 4.966779e-04	k: 821	n:1770000
Cons ci ratio: 8.003542e-03	ci left: 1.188758e-01	ci right 1.198316e-01	k: 211255	n:1770000
KS ci ratio: 1.288551e-01	ci left: 4.889204e-04	ci right 5.567990e-04	k: 924	n:1770000
PABPC3   1770000 perm   1727 sec   (1025 perm/sec)   p_kst 5.220339e-04   p_cons 1.193531e-01   p_joint 4.638418e-04

Joint ci ratio: 1.364452e-01	ci left: 4.318558e-04	ci right 4.956305e-04	k: 824	n:1780000
Cons ci ratio: 7.980613e-03	ci left: 1.188881e-01	ci right 1.198412e-01	k: 212468	n:1780000
KS ci ratio: 1.287161e-01	ci left: 4.872610e-04	ci right 5.548307e-04	k: 926	n:1780000
PABPC3   1780000 perm   1744 sec   (1020 perm/sec)   p_kst 5.202247e-04   p_cons 1.193640e-01   p_joint 4.629213e-04

Joint ci ratio: 1.361979e-01	ci left: 4.310620e-04	ci right 4.945948e-04	k: 827	n:1790000
Cons ci ratio: 7.959022e-03	ci left: 1.188701e-01	ci right 1.198205e-01	k: 213627	n:1790000
KS ci ratio: 1.285776e-01	ci left: 4.856202e-04	ci right 5.528844e-04	k: 928	n:1790000
PABPC3   1790000 perm   1762 sec   (1016 perm/sec)   p_kst 5.184358e-04   p_cons 1.193447e-01   p_joint 4.620112e-04

Joint ci ratio: 1.360338e-01	ci left: 4.297404e-04	ci right 4.929960e-04	k: 829	n:1800000
Cons ci ratio: 7.937019e-03	ci left: 1.188678e-01	ci right 1.198156e-01	k: 214814	n:1800000
KS ci ratio: 1.285086e-01	ci left: 4.834600e-04	ci right 5.503863e-04	k: 929	n:1800000
PABPC3   1800000 perm   1779 sec   (1012 perm/sec)   p_kst 5.161111e-04   p_cons 1.193411e-01   p_joint 4.605556e-04

Joint ci ratio: 1.356259e-01	ci left: 4.300347e-04	ci right 4.931285e-04	k: 834	n:1810000
Cons ci ratio: 7.916528e-03	ci left: 1.188303e-01	ci right 1.197753e-01	k: 215937	n:1810000
KS ci ratio: 1.280960e-01	ci left: 4.839975e-04	ci right 5.507667e-04	k: 935	n:1810000
PABPC3   1810000 perm   1797 sec   (1007 perm/sec)   p_kst 5.165746e-04   p_cons 1.193022e-01   p_joint 4.607735e-04

Joint ci ratio: 1.412371e-01	ci left: 3.931935e-04	ci right 4.534697e-04	k: 769	n:1820000
Cons ci ratio: 7.895493e-03	ci left: 1.188119e-01	ci right 1.197542e-01	k: 217094	n:1820000
KS ci ratio: 1.276874e-01	ci left: 4.845294e-04	ci right 5.511426e-04	k: 941	n:1820000
PABPC3   1820000 perm   1814 sec   (1003 perm/sec)   p_kst 5.170330e-04   p_cons 1.192824e-01   p_joint 4.225275e-04

Joint ci ratio: 1.424453e-01	ci left: 3.841930e-04	ci right 4.436361e-04	k: 756	n:1830000
Cons ci ratio: 7.873704e-03	ci left: 1.188182e-01	ci right 1.197579e-01	k: 218296	n:1830000
KS ci ratio: 1.271485e-01	ci left: 4.861139e-04	ci right 5.526418e-04	k: 949	n:1830000
PABPC3   1830000 perm   1831 sec   (999 perm/sec)   p_kst 5.185792e-04   p_cons 1.192874e-01   p_joint 4.131148e-04

Joint ci ratio: 1.420705e-01	ci left: 3.842015e-04	ci right 4.434763e-04	k: 760	n:1840000
Cons ci ratio: 7.852256e-03	ci left: 1.188200e-01	ci right 1.197572e-01	k: 219490	n:1840000
KS ci ratio: 1.269483e-01	ci left: 4.850506e-04	ci right 5.513205e-04	k: 952	n:1840000
PABPC3   1840000 perm   1850 sec   (995 perm/sec)   p_kst 5.173913e-04   p_cons 1.192880e-01   p_joint 4.130435e-04

Joint ci ratio: 1.416986e-01	ci left: 3.842102e-04	ci right 4.433180e-04	k: 764	n:1850000
Cons ci ratio: 7.829955e-03	ci left: 1.188494e-01	ci right 1.197842e-01	k: 220735	n:1850000
KS ci ratio: 1.266828e-01	ci left: 4.845223e-04	ci right 5.505711e-04	k: 956	n:1850000
PABPC3   1850000 perm   1867 sec   (991 perm/sec)   p_kst 5.167568e-04   p_cons 1.193162e-01   p_joint 4.129730e-04

Joint ci ratio: 1.414216e-01	ci left: 3.837003e-04	ci right 4.426046e-04	k: 767	n:1860000
Cons ci ratio: 7.808902e-03	ci left: 1.188501e-01	ci right 1.197823e-01	k: 221927	n:1860000
KS ci ratio: 1.264189e-01	ci left: 4.839998e-04	ci right 5.498297e-04	k: 960	n:1860000
PABPC3   1860000 perm   1885 sec   (987 perm/sec)   p_kst 5.161290e-04   p_cons 1.193156e-01   p_joint 4.123656e-04

Joint ci ratio: 1.412379e-01	ci left: 3.826801e-04	ci right 4.413450e-04	k: 769	n:1870000
Cons ci ratio: 7.787581e-03	ci left: 1.188624e-01	ci right 1.197922e-01	k: 223141	n:1870000
KS ci ratio: 1.261567e-01	ci left: 4.834830e-04	ci right 5.490960e-04	k: 964	n:1870000
PABPC3   1870000 perm   1902 sec   (983 perm/sec)   p_kst 5.155080e-04   p_cons 1.193267e-01   p_joint 4.112299e-04

Joint ci ratio: 1.410549e-01	ci left: 3.816708e-04	ci right 4.400989e-04	k: 771	n:1880000
Cons ci ratio: 7.767241e-03	ci left: 1.188529e-01	ci right 1.197802e-01	k: 224314	n:1880000
KS ci ratio: 1.258961e-01	ci left: 4.829719e-04	ci right 5.483700e-04	k: 968	n:1880000
PABPC3   1880000 perm   1921 sec   (979 perm/sec)   p_kst 5.148936e-04   p_cons 1.193160e-01   p_joint 4.101064e-04

Joint ci ratio: 1.403295e-01	ci left: 3.837353e-04	ci right 4.421520e-04	k: 779	n:1890000
Cons ci ratio: 7.745966e-03	ci left: 1.188731e-01	ci right 1.197979e-01	k: 225543	n:1890000
KS ci ratio: 1.255081e-01	ci left: 4.834912e-04	ci right 5.487429e-04	k: 974	n:1890000
PABPC3   1890000 perm   1939 sec   (975 perm/sec)   p_kst 5.153439e-04   p_cons 1.193349e-01   p_joint 4.121693e-04

Joint ci ratio: 1.398819e-01	ci left: 3.842549e-04	ci right 4.425486e-04	k: 784	n:1900000
Cons ci ratio: 7.725620e-03	ci left: 1.188725e-01	ci right 1.197950e-01	k: 226733	n:1900000
KS ci ratio: 1.250599e-01	ci left: 4.845153e-04	ci right 5.496544e-04	k: 981	n:1900000
PABPC3   1900000 perm   1957 sec   (971 perm/sec)   p_kst 5.163158e-04   p_cons 1.193332e-01   p_joint 4.126316e-04

Joint ci ratio: 1.391743e-01	ci left: 3.862854e-04	ci right 4.445662e-04	k: 792	n:1910000
Cons ci ratio: 7.704954e-03	ci left: 1.188851e-01	ci right 1.198051e-01	k: 227948	n:1910000
KS ci ratio: 1.246164e-01	ci left: 4.855291e-04	ci right 5.505559e-04	k: 988	n:1910000
PABPC3   1910000 perm   1975 sec   (967 perm/sec)   p_kst 5.172775e-04   p_cons 1.193445e-01   p_joint 4.146597e-04

Joint ci ratio: 1.388247e-01	ci left: 3.862844e-04	ci right 4.444064e-04	k: 796	n:1920000
Cons ci ratio: 7.685023e-03	ci left: 1.188819e-01	ci right 1.197995e-01	k: 229133	n:1920000
KS ci ratio: 1.240531e-01	ci left: 4.875420e-04	ci right 5.525216e-04	k: 997	n:1920000
PABPC3   1920000 perm   1994 sec   (963 perm/sec)   p_kst 5.192708e-04   p_cons 1.193401e-01   p_joint 4.145833e-04

Joint ci ratio: 1.384776e-01	ci left: 3.862836e-04	ci right 4.442482e-04	k: 800	n:1930000
Cons ci ratio: 7.665153e-03	ci left: 1.188813e-01	ci right 1.197965e-01	k: 230323	n:1930000
KS ci ratio: 1.236819e-01	ci left: 4.880284e-04	ci right 5.528639e-04	k: 1003	n:1930000
PABPC3   1930000 perm   2012 sec   (959 perm/sec)   p_kst 5.196891e-04   p_cons 1.193383e-01   p_joint 4.145078e-04

Joint ci ratio: 1.383051e-01	ci left: 3.852877e-04	ci right 4.430249e-04	k: 802	n:1940000
Cons ci ratio: 7.644966e-03	ci left: 1.188936e-01	ci right 1.198065e-01	k: 231538	n:1940000
KS ci ratio: 1.233139e-01	ci left: 4.885100e-04	ci right 5.532023e-04	k: 1009	n:1940000
PABPC3   1940000 perm   2031 sec   (955 perm/sec)   p_kst 5.201031e-04   p_cons 1.193495e-01   p_joint 4.134021e-04

Joint ci ratio: 1.394391e-01	ci left: 3.768767e-04	ci right 4.338550e-04	k: 789	n:1950000
Cons ci ratio: 7.625181e-03	ci left: 1.188991e-01	ci right 1.198097e-01	k: 232740	n:1950000
KS ci ratio: 1.230705e-01	ci left: 4.879929e-04	ci right 5.524799e-04	k: 1013	n:1950000
PABPC3   1950000 perm   2049 sec   (951 perm/sec)   p_kst 5.194872e-04   p_cons 1.193538e-01   p_joint 4.046154e-04

Joint ci ratio: 1.390874e-01	ci left: 3.769235e-04	ci right 4.337533e-04	k: 793	n:1960000
Cons ci ratio: 7.605714e-03	ci left: 1.189000e-01	ci right 1.198083e-01	k: 233933	n:1960000
KS ci ratio: 1.228889e-01	ci left: 4.869867e-04	ci right 5.512388e-04	k: 1016	n:1960000
PABPC3   1960000 perm   2068 sec   (948 perm/sec)   p_kst 5.183673e-04   p_cons 1.193536e-01   p_joint 4.045918e-04

Joint ci ratio: 1.385648e-01	ci left: 3.779501e-04	ci right 4.347029e-04	k: 799	n:1970000
Cons ci ratio: 7.586157e-03	ci left: 1.189075e-01	ci right 1.198134e-01	k: 235139	n:1970000
KS ci ratio: 1.222890e-01	ci left: 4.894352e-04	ci right 5.536723e-04	k: 1026	n:1970000
PABPC3   1970000 perm   2086 sec   (944 perm/sec)   p_kst 5.208122e-04   p_cons 1.193599e-01   p_joint 4.055838e-04

Joint ci ratio: 1.380480e-01	ci left: 3.789668e-04	ci right 4.356425e-04	k: 805	n:1980000
Cons ci ratio: 7.567732e-03	ci left: 1.188876e-01	ci right 1.197913e-01	k: 236291	n:1980000
KS ci ratio: 1.217566e-01	ci left: 4.913700e-04	ci right 5.555601e-04	k: 1035	n:1980000
PABPC3   1980000 perm   2105 sec   (941 perm/sec)   p_kst 5.227273e-04   p_cons 1.193389e-01   p_joint 4.065657e-04

Joint ci ratio: 1.377067e-01	ci left: 3.790031e-04	ci right 4.355327e-04	k: 809	n:1990000
Cons ci ratio: 7.549477e-03	ci left: 1.188670e-01	ci right 1.197683e-01	k: 237441	n:1990000
KS ci ratio: 1.215222e-01	ci left: 4.908497e-04	ci right 5.548395e-04	k: 1039	n:1990000
PABPC3   1990000 perm   2124 sec   (937 perm/sec)   p_kst 5.221106e-04   p_cons 1.193171e-01   p_joint 4.065327e-04

Joint ci ratio: 1.376219e-01	ci left: 3.775909e-04	ci right 4.338722e-04	k: 810	n:2000000
Cons ci ratio: 7.530995e-03	ci left: 1.188566e-01	ci right 1.197555e-01	k: 238611	n:2000000
KS ci ratio: 1.215224e-01	ci left: 4.883954e-04	ci right 5.520654e-04	k: 1039	n:2000000
PABPC3   2000000 perm   2143 sec   (933 perm/sec)   p_kst 5.195000e-04   p_cons 1.193055e-01   p_joint 4.050000e-04

Joint ci ratio: 1.370317e-01	ci left: 3.790753e-04	ci right 4.353158e-04	k: 817	n:2010000
Cons ci ratio: 7.511990e-03	ci left: 1.188646e-01	ci right 1.197614e-01	k: 239818	n:2010000
KS ci ratio: 1.211154e-01	ci left: 4.893425e-04	ci right 5.529070e-04	k: 1046	n:2010000
PABPC3   2010000 perm   2162 sec   (930 perm/sec)   p_kst 5.203980e-04   p_cons 1.193124e-01   p_joint 4.064677e-04

Joint ci ratio: 1.366978e-01	ci left: 3.791110e-04	ci right 4.352087e-04	k: 821	n:2020000
Cons ci ratio: 7.493658e-03	ci left: 1.188577e-01	ci right 1.197523e-01	k: 240995	n:2020000
KS ci ratio: 1.208848e-01	ci left: 4.888403e-04	ci right 5.522099e-04	k: 1050	n:2020000
PABPC3   2020000 perm   2181 sec   (926 perm/sec)   p_kst 5.198020e-04   p_cons 1.193045e-01   p_joint 4.064356e-04

Joint ci ratio: 1.361194e-01	ci left: 3.805741e-04	ci right 4.366307e-04	k: 828	n:2030000
Cons ci ratio: 7.475669e-03	ci left: 1.188451e-01	ci right 1.197373e-01	k: 242160	n:2030000
KS ci ratio: 1.204272e-01	ci left: 4.902542e-04	ci right 5.535494e-04	k: 1058	n:2030000
PABPC3   2030000 perm   2200 sec   (923 perm/sec)   p_kst 5.211823e-04   p_cons 1.192906e-01   p_joint 4.078818e-04

Joint ci ratio: 1.360375e-01	ci left: 3.791821e-04	ci right 4.349973e-04	k: 829	n:2040000
Cons ci ratio: 7.456835e-03	ci left: 1.188599e-01	ci right 1.197500e-01	k: 243381	n:2040000
KS ci ratio: 1.201439e-01	ci left: 4.902282e-04	ci right 5.533606e-04	k: 1063	n:2040000
PABPC3   2040000 perm   2219 sec   (919 perm/sec)   p_kst 5.210784e-04   p_cons 1.193044e-01   p_joint 4.063725e-04

Joint ci ratio: 1.357109e-01	ci left: 3.792173e-04	ci right 4.348928e-04	k: 833	n:2050000
Cons ci ratio: 7.439058e-03	ci left: 1.188488e-01	ci right 1.197367e-01	k: 244549	n:2050000
KS ci ratio: 1.197506e-01	ci left: 4.911490e-04	ci right 5.541783e-04	k: 1070	n:2050000
PABPC3   2050000 perm   2238 sec   (916 perm/sec)   p_kst 5.219512e-04   p_cons 1.192922e-01   p_joint 4.063415e-04

Joint ci ratio: 1.356297e-01	ci left: 3.778454e-04	ci right 4.332836e-04	k: 834	n:2060000
Cons ci ratio: 7.421202e-03	ci left: 1.188436e-01	ci right 1.197293e-01	k: 245729	n:2060000
KS ci ratio: 1.193611e-01	ci left: 4.920613e-04	ci right 5.549878e-04	k: 1077	n:2060000
PABPC3   2060000 perm   2258 sec   (912 perm/sec)   p_kst 5.228155e-04   p_cons 1.192859e-01   p_joint 4.048544e-04

Joint ci ratio: 1.352254e-01	ci left: 3.783536e-04	ci right 4.336877e-04	k: 839	n:2070000
Cons ci ratio: 7.403542e-03	ci left: 1.188365e-01	ci right 1.197201e-01	k: 246905	n:2070000
KS ci ratio: 1.191403e-01	ci left: 4.915589e-04	ci right 5.542966e-04	k: 1081	n:2070000
PABPC3   2070000 perm   2277 sec   (909 perm/sec)   p_kst 5.222222e-04   p_cons 1.192778e-01   p_joint 4.053140e-04

Joint ci ratio: 1.346653e-01	ci left: 3.797864e-04	ci right 4.350816e-04	k: 846	n:2080000
Cons ci ratio: 7.386531e-03	ci left: 1.188147e-01	ci right 1.196960e-01	k: 248050	n:2080000
KS ci ratio: 1.187022e-01	ci left: 4.929274e-04	ci right 5.555922e-04	k: 1089	n:2080000
PABPC3   2080000 perm   2297 sec   (906 perm/sec)   p_kst 5.235577e-04   p_cons 1.192548e-01   p_joint 4.067308e-04

Joint ci ratio: 1.341122e-01	ci left: 3.812060e-04	ci right 4.364616e-04	k: 853	n:2090000
Cons ci ratio: 7.368781e-03	ci left: 1.188174e-01	ci right 1.196966e-01	k: 249246	n:2090000
KS ci ratio: 1.182151e-01	ci left: 4.947475e-04	ci right 5.573676e-04	k: 1098	n:2090000
PABPC3   2090000 perm   2316 sec   (902 perm/sec)   p_kst 5.253589e-04   p_cons 1.192565e-01   p_joint 4.081340e-04

Joint ci ratio: 1.337992e-01	ci left: 3.812316e-04	ci right 4.363518e-04	k: 857	n:2100000
Cons ci ratio: 7.350475e-03	ci left: 1.188395e-01	ci right 1.197167e-01	k: 250483	n:2100000
KS ci ratio: 1.181078e-01	ci left: 4.933158e-04	ci right 5.556940e-04	k: 1100	n:2100000
PABPC3   2100000 perm   2336 sec   (899 perm/sec)   p_kst 5.238095e-04   p_cons 1.192776e-01   p_joint 4.080952e-04

Joint ci ratio: 1.336436e-01	ci left: 3.803410e-04	ci right 4.352634e-04	k: 859	n:2110000
Cons ci ratio: 7.332222e-03	ci left: 1.188639e-01	ci right 1.197391e-01	k: 251725	n:2110000
KS ci ratio: 1.178938e-01	ci left: 4.928176e-04	ci right 5.550121e-04	k: 1104	n:2110000
PABPC3   2110000 perm   2356 sec   (896 perm/sec)   p_kst 5.232227e-04   p_cons 1.193009e-01   p_joint 4.071090e-04

Joint ci ratio: 1.333339e-01	ci left: 3.803707e-04	ci right 4.351600e-04	k: 863	n:2120000
Cons ci ratio: 7.314892e-03	ci left: 1.188654e-01	ci right 1.197385e-01	k: 252919	n:2120000
KS ci ratio: 1.173112e-01	ci left: 4.955291e-04	ci right 5.577353e-04	k: 1115	n:2120000
PABPC3   2120000 perm   2376 sec   (892 perm/sec)   p_kst 5.259434e-04   p_cons 1.193014e-01   p_joint 4.070755e-04

Joint ci ratio: 1.369495e-01	ci left: 3.581720e-04	ci right 4.112769e-04	k: 818	n:2130000
Cons ci ratio: 7.297832e-03	ci left: 1.188626e-01	ci right 1.197337e-01	k: 254104	n:2130000
KS ci ratio: 1.170493e-01	ci left: 4.954812e-04	ci right 5.575330e-04	k: 1120	n:2130000
PABPC3   2130000 perm   2395 sec   (889 perm/sec)   p_kst 5.258216e-04   p_cons 1.192977e-01   p_joint 3.840376e-04

Joint ci ratio: 1.302057e-01	ci left: 3.957954e-04	ci right 4.513655e-04	k: 905	n:2140000
Cons ci ratio: 7.281311e-03	ci left: 1.188478e-01	ci right 1.197168e-01	k: 255263	n:2140000
KS ci ratio: 1.165821e-01	ci left: 4.972487e-04	ci right 5.592561e-04	k: 1129	n:2140000
PABPC3   2140000 perm   2415 sec   (886 perm/sec)   p_kst 5.275701e-04   p_cons 1.192818e-01   p_joint 4.228972e-04

Joint ci ratio: 1.301340e-01	ci left: 3.944044e-04	ci right 4.497464e-04	k: 906	n:2150000
Cons ci ratio: 7.264564e-03	ci left: 1.188429e-01	ci right 1.197098e-01	k: 256443	n:2150000
KS ci ratio: 1.163764e-01	ci left: 4.967421e-04	ci right 5.585696e-04	k: 1133	n:2150000
PABPC3   2150000 perm   2436 sec   (882 perm/sec)   p_kst 5.269767e-04   p_cons 1.192758e-01   p_joint 4.213953e-04

Joint ci ratio: 1.299193e-01	ci left: 3.939222e-04	ci right 4.490983e-04	k: 909	n:2160000
Cons ci ratio: 7.247549e-03	ci left: 1.188491e-01	ci right 1.197140e-01	k: 257647	n:2160000
KS ci ratio: 1.160697e-01	ci left: 4.971394e-04	ci right 5.588421e-04	k: 1139	n:2160000
PABPC3   2160000 perm   2457 sec   (879 perm/sec)   p_kst 5.273148e-04   p_cons 1.192810e-01   p_joint 4.208333e-04

Joint ci ratio: 1.294224e-01	ci left: 3.952280e-04	ci right 4.503591e-04	k: 916	n:2170000
Cons ci ratio: 7.232001e-03	ci left: 1.188161e-01	ci right 1.196789e-01	k: 258766	n:2170000
KS ci ratio: 1.158666e-01	ci left: 4.966383e-04	ci right 5.581636e-04	k: 1143	n:2170000
PABPC3   2170000 perm   2477 sec   (876 perm/sec)   p_kst 5.267281e-04   p_cons 1.192470e-01   p_joint 4.221198e-04

Joint ci ratio: 1.161210e-01	ci left: 4.921331e-04	ci right 5.532432e-04	k: 1138	n:2180000
Cons ci ratio: 7.215466e-03	ci left: 1.188150e-01	ci right 1.196759e-01	k: 259954	n:2180000
KS ci ratio: 1.205433e-01	ci left: 4.556308e-04	ci right 5.145167e-04	k: 1056	n:2180000
PABPC3   2180000 perm   2497 sec   (873 perm/sec)   p_kst 4.844037e-04   p_cons 1.192450e-01   p_joint 5.220183e-04

Joint ci ratio: 1.161721e-01	ci left: 4.894425e-04	ci right 5.502471e-04	k: 1137	n:2190000
Cons ci ratio: 7.199152e-03	ci left: 1.188108e-01	ci right 1.196697e-01	k: 261135	n:2190000
KS ci ratio: 1.204295e-01	ci left: 4.544360e-04	ci right 5.131081e-04	k: 1058	n:2190000
PABPC3   2190000 perm   2517 sec   (870 perm/sec)   p_kst 4.831050e-04   p_cons 1.192397e-01   p_joint 5.191781e-04

Joint ci ratio: 1.159178e-01	ci left: 4.894245e-04	ci right 5.500847e-04	k: 1142	n:2200000
Cons ci ratio: 7.183369e-03	ci left: 1.187943e-01	ci right 1.196512e-01	k: 262289	n:2200000
KS ci ratio: 1.202027e-01	ci left: 4.541338e-04	ci right 5.126486e-04	k: 1062	n:2200000
PABPC3   2200000 perm   2538 sec   (867 perm/sec)   p_kst 4.827273e-04   p_cons 1.192223e-01   p_joint 5.190909e-04

Joint ci ratio: 1.157660e-01	ci left: 4.885280e-04	ci right 5.489924e-04	k: 1145	n:2210000
Cons ci ratio: 7.167303e-03	ci left: 1.187893e-01	ci right 1.196442e-01	k: 263468	n:2210000
KS ci ratio: 1.201464e-01	ci left: 4.525178e-04	ci right 5.107951e-04	k: 1063	n:2210000
PABPC3   2210000 perm   2558 sec   (864 perm/sec)   p_kst 4.809955e-04   p_cons 1.192163e-01   p_joint 5.180995e-04

Joint ci ratio: 1.156148e-01	ci left: 4.876397e-04	ci right 5.479099e-04	k: 1148	n:2220000
Cons ci ratio: 7.151145e-03	ci left: 1.187902e-01	ci right 1.196432e-01	k: 264660	n:2220000
KS ci ratio: 1.197530e-01	ci left: 4.535380e-04	ci right 5.117419e-04	k: 1070	n:2220000
PABPC3   2220000 perm   2579 sec   (861 perm/sec)   p_kst 4.819820e-04   p_cons 1.192162e-01   p_joint 5.171171e-04

Joint ci ratio: 1.150156e-01	ci left: 4.906790e-04	ci right 5.509892e-04	k: 1160	n:2230000
Cons ci ratio: 7.135461e-03	ci left: 1.187804e-01	ci right 1.196314e-01	k: 265828	n:2230000
KS ci ratio: 1.194189e-01	ci left: 4.541143e-04	ci right 5.122181e-04	k: 1076	n:2230000
PABPC3   2230000 perm   2600 sec   (858 perm/sec)   p_kst 4.825112e-04   p_cons 1.192054e-01   p_joint 5.201794e-04

Joint ci ratio: 1.147195e-01	ci left: 4.910900e-04	ci right 5.512849e-04	k: 1166	n:2240000
Cons ci ratio: 7.119835e-03	ci left: 1.187719e-01	ci right 1.196210e-01	k: 266999	n:2240000
KS ci ratio: 1.190327e-01	ci left: 4.551188e-04	ci right 5.131495e-04	k: 1083	n:2240000
PABPC3   2240000 perm   2621 sec   (855 perm/sec)   p_kst 4.834821e-04   p_cons 1.191960e-01   p_joint 5.205357e-04

Joint ci ratio: 1.144746e-01	ci left: 4.910659e-04	ci right 5.511206e-04	k: 1171	n:2250000
Cons ci ratio: 7.104040e-03	ci left: 1.187716e-01	ci right 1.196188e-01	k: 268188	n:2250000
KS ci ratio: 1.188137e-01	ci left: 4.548210e-04	ci right 5.126995e-04	k: 1087	n:2250000
PABPC3   2250000 perm   2642 sec   (852 perm/sec)   p_kst 4.831111e-04   p_cons 1.191947e-01   p_joint 5.204444e-04

Joint ci ratio: 1.145236e-01	ci left: 4.884632e-04	ci right 5.482269e-04	k: 1170	n:2260000
Cons ci ratio: 7.087498e-03	ci left: 1.187964e-01	ci right 1.196418e-01	k: 269434	n:2260000
KS ci ratio: 1.184333e-01	ci left: 4.558139e-04	ci right 5.136201e-04	k: 1094	n:2260000
PABPC3   2260000 perm   2663 sec   (849 perm/sec)   p_kst 4.840708e-04   p_cons 1.192186e-01   p_joint 5.176991e-04

Joint ci ratio: 1.143772e-01	ci left: 4.875952e-04	ci right 5.471713e-04	k: 1173	n:2270000
Cons ci ratio: 7.071487e-03	ci left: 1.188087e-01	ci right 1.196522e-01	k: 270652	n:2270000
KS ci ratio: 1.182176e-01	ci left: 4.555159e-04	ci right 5.131717e-04	k: 1098	n:2270000
PABPC3   2270000 perm   2684 sec   (846 perm/sec)   p_kst 4.837004e-04   p_cons 1.192300e-01   p_joint 5.167401e-04

Joint ci ratio: 1.141829e-01	ci left: 4.871608e-04	ci right 5.465759e-04	k: 1177	n:2280000
Cons ci ratio: 7.055451e-03	ci left: 1.188248e-01	ci right 1.196665e-01	k: 271879	n:2280000
KS ci ratio: 1.181102e-01	ci left: 4.543693e-04	ci right 5.118241e-04	k: 1100	n:2280000
PABPC3   2280000 perm   2706 sec   (843 perm/sec)   p_kst 4.824561e-04   p_cons 1.192452e-01   p_joint 5.162281e-04

Joint ci ratio: 1.138451e-01	ci left: 4.880031e-04	ci right 5.473330e-04	k: 1184	n:2290000
Cons ci ratio: 7.040709e-03	ci left: 1.188054e-01	ci right 1.196453e-01	k: 273025	n:2290000
KS ci ratio: 1.177365e-01	ci left: 4.553517e-04	ci right 5.127359e-04	k: 1107	n:2290000
PABPC3   2290000 perm   2727 sec   (840 perm/sec)   p_kst 4.834061e-04   p_cons 1.192249e-01   p_joint 5.170306e-04

Joint ci ratio: 1.136057e-01	ci left: 4.879934e-04	ci right 5.471890e-04	k: 1189	n:2300000
Cons ci ratio: 7.025347e-03	ci left: 1.188076e-01	ci right 1.196456e-01	k: 274220	n:2300000
KS ci ratio: 1.174189e-01	ci left: 4.559039e-04	ci right 5.131920e-04	k: 1113	n:2300000
PABPC3   2300000 perm   2748 sec   (837 perm/sec)   p_kst 4.839130e-04   p_cons 1.192261e-01   p_joint 5.169565e-04

Joint ci ratio: 1.133204e-01	ci left: 4.884046e-04	ci right 5.474913e-04	k: 1195	n:2310000
Cons ci ratio: 7.009998e-03	ci left: 1.188122e-01	ci right 1.196485e-01	k: 275421	n:2310000
KS ci ratio: 1.171040e-01	ci left: 4.564516e-04	ci right 5.136440e-04	k: 1119	n:2310000
PABPC3   2310000 perm   2770 sec   (834 perm/sec)   p_kst 4.844156e-04   p_cons 1.192299e-01   p_joint 5.173160e-04

Joint ci ratio: 1.130842e-01	ci left: 4.883935e-04	ci right 5.473476e-04	k: 1200	n:2320000
Cons ci ratio: 6.995108e-03	ci left: 1.188061e-01	ci right 1.196405e-01	k: 276597	n:2320000
KS ci ratio: 1.167915e-01	ci left: 4.569947e-04	ci right 5.140918e-04	k: 1125	n:2320000
PABPC3   2320000 perm   2792 sec   (831 perm/sec)   p_kst 4.849138e-04   p_cons 1.192228e-01   p_joint 5.172414e-04

Joint ci ratio: 1.128028e-01	ci left: 4.887998e-04	ci right 5.476463e-04	k: 1206	n:2330000
Cons ci ratio: 6.980298e-03	ci left: 1.188005e-01	ci right 1.196331e-01	k: 277774	n:2330000
KS ci ratio: 1.165331e-01	ci left: 4.571166e-04	ci right 5.140939e-04	k: 1130	n:2330000
PABPC3   2330000 perm   2813 sec   (828 perm/sec)   p_kst 4.849785e-04   p_cons 1.192163e-01   p_joint 5.175966e-04

Joint ci ratio: 1.124771e-01	ci left: 4.896181e-04	ci right 5.483816e-04	k: 1213	n:2340000
Cons ci ratio: 6.964689e-03	ci left: 1.188218e-01	ci right 1.196527e-01	k: 279014	n:2340000
KS ci ratio: 1.162252e-01	ci left: 4.576526e-04	ci right 5.145356e-04	k: 1136	n:2340000
PABPC3   2340000 perm   2835 sec   (825 perm/sec)   p_kst 4.854701e-04   p_cons 1.192368e-01   p_joint 5.183761e-04

Joint ci ratio: 1.122001e-01	ci left: 4.900161e-04	ci right 5.486730e-04	k: 1219	n:2350000
Cons ci ratio: 6.949832e-03	ci left: 1.188234e-01	ci right 1.196525e-01	k: 280208	n:2350000
KS ci ratio: 1.159705e-01	ci left: 4.577710e-04	ci right 5.145355e-04	k: 1141	n:2350000
PABPC3   2350000 perm   2857 sec   (822 perm/sec)   p_kst 4.855319e-04   p_cons 1.192374e-01   p_joint 5.187234e-04

Joint ci ratio: 1.120167e-01	ci left: 4.895871e-04	ci right 5.480905e-04	k: 1223	n:2360000
Cons ci ratio: 6.935083e-03	ci left: 1.188245e-01	ci right 1.196518e-01	k: 281401	n:2360000
KS ci ratio: 1.158691e-01	ci left: 4.566542e-04	ci right 5.132273e-04	k: 1143	n:2360000
PABPC3   2360000 perm   2879 sec   (820 perm/sec)   p_kst 4.843220e-04   p_cons 1.192377e-01   p_joint 5.182203e-04

Joint ci ratio: 1.118797e-01	ci left: 4.887517e-04	ci right 5.470792e-04	k: 1226	n:2370000
Cons ci ratio: 6.920497e-03	ci left: 1.188235e-01	ci right 1.196491e-01	k: 282589	n:2370000
KS ci ratio: 1.156167e-01	ci left: 4.567760e-04	ci right 5.132326e-04	k: 1148	n:2370000
PABPC3   2370000 perm   2901 sec   (817 perm/sec)   p_kst 4.843882e-04   p_cons 1.192359e-01   p_joint 5.172996e-04

Joint ci ratio: 1.115167e-01	ci left: 4.899656e-04	ci right 5.482357e-04	k: 1234	n:2380000
Cons ci ratio: 6.904926e-03	ci left: 1.188553e-01	ci right 1.196792e-01	k: 283855	n:2380000
KS ci ratio: 1.152661e-01	ci left: 4.577130e-04	ci right 5.141022e-04	k: 1155	n:2380000
PABPC3   2380000 perm   2923 sec   (814 perm/sec)   p_kst 4.852941e-04   p_cons 1.192668e-01   p_joint 5.184874e-04

Joint ci ratio: 1.111572e-01	ci left: 4.911696e-04	ci right 5.493823e-04	k: 1242	n:2390000
Cons ci ratio: 6.890049e-03	ci left: 1.188688e-01	ci right 1.196911e-01	k: 285078	n:2390000
KS ci ratio: 1.150176e-01	ci left: 4.578297e-04	ci right 5.141034e-04	k: 1160	n:2390000
PABPC3   2390000 perm   2946 sec   (811 perm/sec)   p_kst 4.853556e-04   p_cons 1.192795e-01   p_joint 5.196653e-04

Joint ci ratio: 1.105802e-01	ci left: 4.943896e-04	ci right 5.526599e-04	k: 1255	n:2400000
Cons ci ratio: 6.875664e-03	ci left: 1.188702e-01	ci right 1.196907e-01	k: 286272	n:2400000
KS ci ratio: 1.145253e-01	ci left: 4.599692e-04	ci right 5.162475e-04	k: 1170	n:2400000
PABPC3   2400000 perm   2968 sec   (809 perm/sec)   p_kst 4.875000e-04   p_cons 1.192800e-01   p_joint 5.229167e-04

Joint ci ratio: 1.104046e-01	ci left: 4.939520e-04	ci right 5.520723e-04	k: 1259	n:2410000
Cons ci ratio: 6.861463e-03	ci left: 1.188686e-01	ci right 1.196875e-01	k: 287459	n:2410000
KS ci ratio: 1.142330e-01	ci left: 4.604790e-04	ci right 5.166662e-04	k: 1176	n:2410000
PABPC3   2410000 perm   2990 sec   (806 perm/sec)   p_kst 4.879668e-04   p_cons 1.192776e-01   p_joint 5.224066e-04

Joint ci ratio: 1.109345e-01	ci left: 4.870894e-04	ci right 5.446953e-04	k: 1247	n:2420000
Cons ci ratio: 6.847700e-03	ci left: 1.188564e-01	ci right 1.196735e-01	k: 288620	n:2420000
KS ci ratio: 1.139429e-01	ci left: 4.609848e-04	ci right 5.170813e-04	k: 1182	n:2420000
PABPC3   2420000 perm   3012 sec   (803 perm/sec)   p_kst 4.884298e-04   p_cons 1.192645e-01   p_joint 5.152893e-04

Joint ci ratio: 1.107130e-01	ci left: 4.870855e-04	ci right 5.445684e-04	k: 1252	n:2430000
Cons ci ratio: 6.834032e-03	ci left: 1.188438e-01	ci right 1.196592e-01	k: 289780	n:2430000
KS ci ratio: 1.137988e-01	ci left: 4.602871e-04	ci right 5.162231e-04	k: 1185	n:2430000
PABPC3   2430000 perm   3035 sec   (801 perm/sec)   p_kst 4.876543e-04   p_cons 1.192510e-01   p_joint 5.152263e-04

Joint ci ratio: 1.104049e-01	ci left: 4.878788e-04	ci right 5.452847e-04	k: 1259	n:2440000
Cons ci ratio: 6.819302e-03	ci left: 1.188665e-01	ci right 1.196803e-01	k: 291026	n:2440000
KS ci ratio: 1.134644e-01	ci left: 4.611880e-04	ci right 5.170578e-04	k: 1192	n:2440000
PABPC3   2440000 perm   3057 sec   (798 perm/sec)   p_kst 4.885246e-04   p_cons 1.192730e-01   p_joint 5.159836e-04

Joint ci ratio: 1.100561e-01	ci left: 4.890627e-04	ci right 5.464143e-04	k: 1267	n:2450000
Cons ci ratio: 6.805764e-03	ci left: 1.188552e-01	ci right 1.196673e-01	k: 292189	n:2450000
KS ci ratio: 1.131329e-01	ci left: 4.620818e-04	ci right 5.178854e-04	k: 1199	n:2450000
PABPC3   2450000 perm   3080 sec   (795 perm/sec)   p_kst 4.893878e-04   p_cons 1.192608e-01   p_joint 5.171429e-04

Joint ci ratio: 1.099261e-01	ci left: 4.882606e-04	ci right 5.454462e-04	k: 1270	n:2460000
Cons ci ratio: 6.791728e-03	ci left: 1.188619e-01	ci right 1.196723e-01	k: 293396	n:2460000
KS ci ratio: 1.129918e-01	ci left: 4.613884e-04	ci right 5.170342e-04	k: 1202	n:2460000
PABPC3   2460000 perm   3103 sec   (793 perm/sec)   p_kst 4.886179e-04   p_cons 1.192667e-01   p_joint 5.162602e-04

Joint ci ratio: 1.098398e-01	ci left: 4.870713e-04	ci right 5.440698e-04	k: 1272	n:2470000
Cons ci ratio: 6.777256e-03	ci left: 1.188847e-01	ci right 1.196935e-01	k: 294643	n:2470000
KS ci ratio: 1.127577e-01	ci left: 4.614876e-04	ci right 5.170223e-04	k: 1207	n:2470000
PABPC3   2470000 perm   3126 sec   (790 perm/sec)   p_kst 4.886640e-04   p_cons 1.192887e-01   p_joint 5.149798e-04

Joint ci ratio: 1.097968e-01	ci left: 4.854994e-04	ci right 5.422903e-04	k: 1273	n:2480000
Cons ci ratio: 6.763616e-03	ci left: 1.188843e-01	ci right 1.196915e-01	k: 295833	n:2480000
KS ci ratio: 1.125715e-01	ci left: 4.611942e-04	ci right 5.165959e-04	k: 1211	n:2480000
PABPC3   2480000 perm   3149 sec   (788 perm/sec)   p_kst 4.883065e-04   p_cons 1.192875e-01   p_joint 5.133065e-04

Joint ci ratio: 1.110244e-01	ci left: 4.726150e-04	ci right 5.285573e-04	k: 1245	n:2490000
Cons ci ratio: 6.750329e-03	ci left: 1.188756e-01	ci right 1.196811e-01	k: 297002	n:2490000
KS ci ratio: 1.125252e-01	ci left: 4.597323e-04	ci right 5.149341e-04	k: 1212	n:2490000
PABPC3   2490000 perm   3172 sec   (785 perm/sec)   p_kst 4.867470e-04   p_cons 1.192779e-01   p_joint 5.000000e-04

Joint ci ratio: 1.140887e-01	ci left: 4.450673e-04	ci right 4.993007e-04	k: 1179	n:2500000
Cons ci ratio: 6.736222e-03	ci left: 1.188948e-01	ci right 1.196988e-01	k: 298241	n:2500000
KS ci ratio: 1.123401e-01	ci left: 4.594484e-04	ci right 5.145194e-04	k: 1216	n:2500000
PABPC3   2500000 perm   3195 sec   (782 perm/sec)   p_kst 4.864000e-04   p_cons 1.192964e-01   p_joint 4.716000e-04

Joint ci ratio: 1.137517e-01	ci left: 4.460035e-04	ci right 5.001797e-04	k: 1186	n:2510000
Cons ci ratio: 6.722267e-03	ci left: 1.189120e-01	ci right 1.197144e-01	k: 299475	n:2510000
KS ci ratio: 1.120184e-01	ci left: 4.603285e-04	ci right 5.153366e-04	k: 1223	n:2510000
PABPC3   2510000 perm   3218 sec   (780 perm/sec)   p_kst 4.872510e-04   p_cons 1.193127e-01   p_joint 4.725100e-04

Joint ci ratio: 1.139440e-01	ci left: 4.426915e-04	ci right 4.965625e-04	k: 1182	n:2520000
Cons ci ratio: 6.708829e-03	ci left: 1.189155e-01	ci right 1.197163e-01	k: 300675	n:2520000
KS ci ratio: 1.118358e-01	ci left: 4.600447e-04	ci right 5.149233e-04	k: 1227	n:2520000
PABPC3   2520000 perm   3242 sec   (777 perm/sec)   p_kst 4.869048e-04   p_cons 1.193155e-01   p_joint 4.690476e-04

Joint ci ratio: 1.137519e-01	ci left: 4.424777e-04	ci right 4.962258e-04	k: 1186	n:2530000
Cons ci ratio: 6.695496e-03	ci left: 1.189182e-01	ci right 1.197175e-01	k: 301873	n:2530000
KS ci ratio: 1.116995e-01	ci left: 4.593790e-04	ci right 5.141069e-04	k: 1230	n:2530000
PABPC3   2530000 perm   3265 sec   (775 perm/sec)   p_kst 4.861660e-04   p_cons 1.193174e-01   p_joint 4.687747e-04

Joint ci ratio: 1.161253e-01	ci left: 4.223810e-04	ci right 4.748318e-04	k: 1138	n:2540000
Cons ci ratio: 6.681517e-03	ci left: 1.189437e-01	ci right 1.197414e-01	k: 303129	n:2540000
KS ci ratio: 1.112933e-01	ci left: 4.610149e-04	ci right 5.157249e-04	k: 1239	n:2540000
PABPC3   2540000 perm   3289 sec   (772 perm/sec)   p_kst 4.877953e-04   p_cons 1.193421e-01   p_joint 4.480315e-04

Joint ci ratio: 1.159219e-01	ci left: 4.222477e-04	ci right 4.745839e-04	k: 1142	n:2550000
Cons ci ratio: 6.668321e-03	ci left: 1.189470e-01	ci right 1.197432e-01	k: 304329	n:2550000
KS ci ratio: 1.111590e-01	ci left: 4.603507e-04	ci right 5.149117e-04	k: 1242	n:2550000
PABPC3   2550000 perm   3312 sec   (770 perm/sec)   p_kst 4.870588e-04   p_cons 1.193447e-01   p_joint 4.478431e-04

Joint ci ratio: 1.053798e-01	ci left: 5.117608e-04	ci right 5.690663e-04	k: 1382	n:2560000
Cons ci ratio: 6.655537e-03	ci left: 1.189398e-01	ci right 1.197345e-01	k: 305502	n:2560000
KS ci ratio: 1.108916e-01	ci left: 4.608311e-04	ci right 5.153091e-04	k: 1248	n:2560000
PABPC3   2560000 perm   3336 sec   (767 perm/sec)   p_kst 4.875000e-04   p_cons 1.193367e-01   p_joint 5.398437e-04

Joint ci ratio: 1.052658e-01	ci left: 5.109061e-04	ci right 5.680501e-04	k: 1385	n:2570000
Cons ci ratio: 6.642495e-03	ci left: 1.189432e-01	ci right 1.197363e-01	k: 306702	n:2570000
KS ci ratio: 1.108474e-01	ci left: 4.594163e-04	ci right 5.137039e-04	k: 1249	n:2570000
PABPC3   2570000 perm   3359 sec   (765 perm/sec)   p_kst 4.859922e-04   p_cons 1.193393e-01   p_joint 5.389105e-04

Joint ci ratio: 1.050764e-01	ci left: 5.108128e-04	ci right 5.678373e-04	k: 1390	n:2580000
Cons ci ratio: 6.629736e-03	ci left: 1.189399e-01	ci right 1.197315e-01	k: 307885	n:2580000
KS ci ratio: 1.105823e-01	ci left: 4.598968e-04	ci right 5.141028e-04	k: 1255	n:2580000
PABPC3   2580000 perm   3383 sec   (763 perm/sec)   p_kst 4.864341e-04   p_cons 1.193353e-01   p_joint 5.387597e-04

Joint ci ratio: 1.048505e-01	ci left: 5.110964e-04	ci right 5.680223e-04	k: 1396	n:2590000
Cons ci ratio: 6.617440e-03	ci left: 1.189244e-01	ci right 1.197143e-01	k: 309036	n:2590000
KS ci ratio: 1.104944e-01	ci left: 4.588720e-04	ci right 5.129114e-04	k: 1257	n:2590000
PABPC3   2590000 perm   3406 sec   (760 perm/sec)   p_kst 4.853282e-04   p_cons 1.193189e-01   p_joint 5.389961e-04

Joint ci ratio: 1.046261e-01	ci left: 5.113779e-04	ci right 5.682057e-04	k: 1402	n:2600000
Cons ci ratio: 6.605091e-03	ci left: 1.189128e-01	ci right 1.197012e-01	k: 310197	n:2600000
KS ci ratio: 1.102754e-01	ci left: 4.589771e-04	ci right 5.129148e-04	k: 1262	n:2600000
PABPC3   2600000 perm   3430 sec   (758 perm/sec)   p_kst 4.853846e-04   p_cons 1.193065e-01   p_joint 5.392308e-04

Joint ci ratio: 1.043660e-01	ci left: 5.120305e-04	ci right 5.687807e-04	k: 1409	n:2610000
Cons ci ratio: 6.591645e-03	ci left: 1.189384e-01	ci right 1.197253e-01	k: 311455	n:2610000
KS ci ratio: 1.099278e-01	ci left: 4.601993e-04	ci right 5.140991e-04	k: 1270	n:2610000
PABPC3   2610000 perm   3454 sec   (756 perm/sec)   p_kst 4.865900e-04   p_cons 1.193314e-01   p_joint 5.398467e-04

Joint ci ratio: 1.041447e-01	ci left: 5.123065e-04	ci right 5.689595e-04	k: 1415	n:2620000
Cons ci ratio: 6.579643e-03	ci left: 1.189203e-01	ci right 1.197057e-01	k: 312599	n:2620000
KS ci ratio: 1.096692e-01	ci left: 4.606700e-04	ci right 5.144898e-04	k: 1276	n:2620000
PABPC3   2620000 perm   3478 sec   (753 perm/sec)   p_kst 4.870229e-04   p_cons 1.193126e-01   p_joint 5.400763e-04

Joint ci ratio: 1.040346e-01	ci left: 5.114696e-04	ci right 5.679666e-04	k: 1418	n:2630000
Cons ci ratio: 6.566993e-03	ci left: 1.189252e-01	ci right 1.197091e-01	k: 313803	n:2630000
KS ci ratio: 1.094979e-01	ci left: 4.603976e-04	ci right 5.140962e-04	k: 1280	n:2630000
PABPC3   2630000 perm   3502 sec   (751 perm/sec)   p_kst 4.866920e-04   p_cons 1.193167e-01   p_joint 5.391635e-04

Joint ci ratio: 1.037789e-01	ci left: 5.121148e-04	ci right 5.685356e-04	k: 1425	n:2640000
Cons ci ratio: 6.554168e-03	ci left: 1.189380e-01	ci right 1.197204e-01	k: 315028	n:2640000
KS ci ratio: 1.093273e-01	ci left: 4.601274e-04	ci right 5.137054e-04	k: 1284	n:2640000
PABPC3   2640000 perm   3526 sec   (749 perm/sec)   p_kst 4.863636e-04   p_cons 1.193288e-01   p_joint 5.397727e-04

Joint ci ratio: 1.036336e-01	ci left: 5.116526e-04	ci right 5.679387e-04	k: 1429	n:2650000
Cons ci ratio: 6.542098e-03	ci left: 1.189288e-01	ci right 1.197098e-01	k: 316195	n:2650000
KS ci ratio: 1.091152e-01	ci left: 4.602263e-04	ci right 5.137053e-04	k: 1289	n:2650000
PABPC3   2650000 perm   3550 sec   (746 perm/sec)   p_kst 4.864151e-04   p_cons 1.193189e-01   p_joint 5.392453e-04

Joint ci ratio: 1.033809e-01	ci left: 5.122925e-04	ci right 5.685033e-04	k: 1436	n:2660000
Cons ci ratio: 6.530037e-03	ci left: 1.189216e-01	ci right 1.197011e-01	k: 317367	n:2660000
KS ci ratio: 1.089886e-01	ci left: 4.595932e-04	ci right 5.129326e-04	k: 1292	n:2660000
PABPC3   2660000 perm   3574 sec   (744 perm/sec)   p_kst 4.857143e-04   p_cons 1.193109e-01   p_joint 5.398496e-04

Joint ci ratio: 1.029518e-01	ci left: 5.147523e-04	ci right 5.709843e-04	k: 1448	n:2670000
Cons ci ratio: 6.518321e-03	ci left: 1.189054e-01	ci right 1.196834e-01	k: 318515	n:2670000
KS ci ratio: 1.086529e-01	ci left: 4.607866e-04	ci right 5.140893e-04	k: 1300	n:2670000
PABPC3   2670000 perm   3599 sec   (742 perm/sec)   p_kst 4.868914e-04   p_cons 1.192940e-01   p_joint 5.423221e-04

Joint ci ratio: 1.035615e-01	ci left: 5.066520e-04	ci right 5.623469e-04	k: 1431	n:2680000
Cons ci ratio: 6.506402e-03	ci left: 1.188980e-01	ci right 1.196745e-01	k: 319686	n:2680000
KS ci ratio: 1.083618e-01	ci left: 4.616083e-04	ci right 5.148538e-04	k: 1307	n:2680000
PABPC3   2680000 perm   3624 sec   (740 perm/sec)   p_kst 4.876866e-04   p_cons 1.192858e-01   p_joint 5.339552e-04

Joint ci ratio: 1.031302e-01	ci left: 5.091142e-04	ci right 5.648326e-04	k: 1443	n:2690000
Cons ci ratio: 6.494514e-03	ci left: 1.188917e-01	ci right 1.196667e-01	k: 320860	n:2690000
KS ci ratio: 1.080729e-01	ci left: 4.624241e-04	ci right 5.156125e-04	k: 1314	n:2690000
PABPC3   2690000 perm   3648 sec   (737 perm/sec)   p_kst 4.884758e-04   p_cons 1.192788e-01   p_joint 5.364312e-04

Joint ci ratio: 1.028811e-01	ci left: 5.097544e-04	ci right 5.654000e-04	k: 1450	n:2700000
Cons ci ratio: 6.482851e-03	ci left: 1.188803e-01	ci right 1.196538e-01	k: 322020	n:2700000
KS ci ratio: 1.077456e-01	ci left: 4.635944e-04	ci right 5.167457e-04	k: 1322	n:2700000
PABPC3   2700000 perm   3673 sec   (735 perm/sec)   p_kst 4.896296e-04   p_cons 1.192667e-01   p_joint 5.370370e-04

Joint ci ratio: 1.027043e-01	ci left: 5.096710e-04	ci right 5.652060e-04	k: 1455	n:2710000
Cons ci ratio: 6.470068e-03	ci left: 1.189073e-01	ci right 1.196795e-01	k: 323284	n:2710000
KS ci ratio: 1.076643e-01	ci left: 4.626019e-04	ci right 5.155968e-04	k: 1324	n:2710000
PABPC3   2710000 perm   3698 sec   (733 perm/sec)   p_kst 4.885609e-04   p_cons 1.192930e-01   p_joint 5.369004e-04

Joint ci ratio: 1.028458e-01	ci left: 5.063644e-04	ci right 5.616198e-04	k: 1451	n:2720000
Cons ci ratio: 6.457982e-03	ci left: 1.189139e-01	ci right 1.196847e-01	k: 324493	n:2720000
KS ci ratio: 1.075427e-01	ci left: 4.619744e-04	ci right 5.148338e-04	k: 1327	n:2720000
PABPC3   2720000 perm   3723 sec   (731 perm/sec)   p_kst 4.878676e-04   p_cons 1.192989e-01   p_joint 5.334559e-04

Joint ci ratio: 1.024934e-01	ci left: 5.080785e-04	ci right 5.633195e-04	k: 1461	n:2730000
Cons ci ratio: 6.446009e-03	ci left: 1.189190e-01	ci right 1.196884e-01	k: 325698	n:2730000
KS ci ratio: 1.073005e-01	ci left: 4.624209e-04	ci right 5.152048e-04	k: 1333	n:2730000
PABPC3   2730000 perm   3748 sec   (728 perm/sec)   p_kst 4.882784e-04   p_cons 1.193033e-01   p_joint 5.351648e-04

Joint ci ratio: 1.030593e-01	ci left: 5.005348e-04	ci right 5.552743e-04	k: 1445	n:2740000
Cons ci ratio: 6.434481e-03	ci left: 1.189117e-01	ci right 1.196796e-01	k: 326869	n:2740000
KS ci ratio: 1.072604e-01	ci left: 4.610884e-04	ci right 5.136993e-04	k: 1334	n:2740000
PABPC3   2740000 perm   3772 sec   (726 perm/sec)   p_kst 4.868613e-04   p_cons 1.192953e-01   p_joint 5.273723e-04

Joint ci ratio: 1.029526e-01	ci left: 4.997775e-04	ci right 5.543741e-04	k: 1448	n:2750000
Cons ci ratio: 6.422760e-03	ci left: 1.189128e-01	ci right 1.196793e-01	k: 328063	n:2750000
KS ci ratio: 1.072204e-01	ci left: 4.597656e-04	ci right 5.122047e-04	k: 1335	n:2750000
PABPC3   2750000 perm   3797 sec   (724 perm/sec)   p_kst 4.854545e-04   p_cons 1.192956e-01   p_joint 5.265455e-04

Joint ci ratio: 1.030239e-01	ci left: 4.972607e-04	ci right 5.516223e-04	k: 1446	n:2760000
Cons ci ratio: 6.411158e-03	ci left: 1.189120e-01	ci right 1.196772e-01	k: 329252	n:2760000
KS ci ratio: 1.071002e-01	ci left: 4.591576e-04	ci right 5.114649e-04	k: 1338	n:2760000
PABPC3   2760000 perm   3823 sec   (722 perm/sec)   p_kst 4.847826e-04   p_cons 1.192942e-01   p_joint 5.239130e-04

Joint ci ratio: 1.027402e-01	ci left: 4.982793e-04	ci right 5.525932e-04	k: 1454	n:2770000
Cons ci ratio: 6.399893e-03	ci left: 1.189023e-01	ci right 1.196660e-01	k: 330416	n:2770000
KS ci ratio: 1.069805e-01	ci left: 4.585540e-04	ci right 5.107305e-04	k: 1341	n:2770000
PABPC3   2770000 perm   3848 sec   (720 perm/sec)   p_kst 4.841155e-04   p_cons 1.192838e-01   p_joint 5.249097e-04

Joint ci ratio: 1.029174e-01	ci left: 4.947346e-04	ci right 5.487607e-04	k: 1449	n:2780000
Cons ci ratio: 6.388185e-03	ci left: 1.189091e-01	ci right 1.196715e-01	k: 331626	n:2780000
KS ci ratio: 1.068611e-01	ci left: 4.579548e-04	ci right 5.100014e-04	k: 1344	n:2780000
PABPC3   2780000 perm   3873 sec   (718 perm/sec)   p_kst 4.834532e-04   p_cons 1.192899e-01   p_joint 5.212230e-04

Joint ci ratio: 1.027404e-01	ci left: 4.947074e-04	ci right 5.486320e-04	k: 1454	n:2790000
Cons ci ratio: 6.377617e-03	ci left: 1.188805e-01	ci right 1.196414e-01	k: 332737	n:2790000
KS ci ratio: 1.067026e-01	ci left: 4.577088e-04	ci right 5.096454e-04	k: 1348	n:2790000
PABPC3   2790000 perm   3899 sec   (716 perm/sec)   p_kst 4.831541e-04   p_cons 1.192606e-01   p_joint 5.211470e-04

Joint ci ratio: 1.025643e-01	ci left: 4.946804e-04	ci right 5.485042e-04	k: 1459	n:2800000
Cons ci ratio: 6.366831e-03	ci left: 1.188610e-01	ci right 1.196205e-01	k: 333873	n:2800000
KS ci ratio: 1.064661e-01	ci left: 4.581598e-04	ci right 5.100252e-04	k: 1354	n:2800000
PABPC3   2800000 perm   3924 sec   (713 perm/sec)   p_kst 4.835714e-04   p_cons 1.192404e-01   p_joint 5.210714e-04

Joint ci ratio: 1.021800e-01	ci left: 4.967344e-04	ci right 5.505669e-04	k: 1470	n:2810000
Cons ci ratio: 6.355518e-03	ci left: 1.188608e-01	ci right 1.196190e-01	k: 335063	n:2810000
KS ci ratio: 1.059588e-01	ci left: 4.610329e-04	ci right 5.129593e-04	k: 1367	n:2810000
PABPC3   2810000 perm   3950 sec   (711 perm/sec)   p_kst 4.864769e-04   p_cons 1.192395e-01   p_joint 5.231317e-04

Joint ci ratio: 1.023892e-01	ci left: 4.928996e-04	ci right 5.464326e-04	k: 1464	n:2820000
Cons ci ratio: 6.344908e-03	ci left: 1.188394e-01	ci right 1.195961e-01	k: 336193	n:2820000
KS ci ratio: 1.058815e-01	ci left: 4.600884e-04	ci right 5.118683e-04	k: 1369	n:2820000
PABPC3   2820000 perm   3976 sec   (709 perm/sec)   p_kst 4.854610e-04   p_cons 1.192174e-01   p_joint 5.191489e-04

Joint ci ratio: 1.021108e-01	ci left: 4.939125e-04	ci right 5.474008e-04	k: 1472	n:2830000
Cons ci ratio: 6.333977e-03	ci left: 1.188305e-01	ci right 1.195859e-01	k: 337358	n:2830000
KS ci ratio: 1.056504e-01	ci left: 4.605267e-04	ci right 5.122358e-04	k: 1375	n:2830000
PABPC3   2830000 perm   4001 sec   (707 perm/sec)   p_kst 4.858657e-04   p_cons 1.192078e-01   p_joint 5.201413e-04

Joint ci ratio: 1.020070e-01	ci left: 4.932028e-04	ci right 5.465566e-04	k: 1475	n:2840000
Cons ci ratio: 6.322785e-03	ci left: 1.188322e-01	ci right 1.195862e-01	k: 338553	n:2840000
KS ci ratio: 1.055738e-01	ci left: 4.595908e-04	ci right 5.111549e-04	k: 1377	n:2840000
PABPC3   2840000 perm   4027 sec   (705 perm/sec)   p_kst 4.848592e-04   p_cons 1.192088e-01   p_joint 5.193662e-04

Joint ci ratio: 1.016973e-01	ci left: 4.945497e-04	ci right 5.478772e-04	k: 1484	n:2850000
Cons ci ratio: 6.311315e-03	ci left: 1.188450e-01	ci right 1.195978e-01	k: 339780	n:2850000
KS ci ratio: 1.053066e-01	ci left: 4.603695e-04	ci right 5.118823e-04	k: 1384	n:2850000
PABPC3   2850000 perm   4053 sec   (703 perm/sec)   p_kst 4.856140e-04   p_cons 1.192211e-01   p_joint 5.207018e-04

Joint ci ratio: 1.014585e-01	ci left: 4.952059e-04	ci right 5.484712e-04	k: 1491	n:2860000
Cons ci ratio: 6.300536e-03	ci left: 1.188369e-01	ci right 1.195883e-01	k: 340947	n:2860000
KS ci ratio: 1.050414e-01	ci left: 4.611430e-04	ci right 5.126044e-04	k: 1391	n:2860000
PABPC3   2860000 perm   4079 sec   (701 perm/sec)   p_kst 4.863636e-04   p_cons 1.192122e-01   p_joint 5.213287e-04

Joint ci ratio: 1.013228e-01	ci left: 4.948388e-04	ci right 5.479893e-04	k: 1495	n:2870000
Cons ci ratio: 6.289561e-03	ci left: 1.188372e-01	ci right 1.195873e-01	k: 342138	n:2870000
KS ci ratio: 1.047783e-01	ci left: 4.619113e-04	ci right 5.133213e-04	k: 1398	n:2870000
PABPC3   2870000 perm   4105 sec   (699 perm/sec)   p_kst 4.871080e-04   p_cons 1.192118e-01   p_joint 5.209059e-04

Joint ci ratio: 1.011202e-01	ci left: 4.951512e-04	ci right 5.482226e-04	k: 1501	n:2880000
Cons ci ratio: 6.279122e-03	ci left: 1.188215e-01	ci right 1.195703e-01	k: 343283	n:2880000
KS ci ratio: 1.047035e-01	ci left: 4.609837e-04	ci right 5.122516e-04	k: 1400	n:2880000
PABPC3   2880000 perm   4131 sec   (697 perm/sec)   p_kst 4.861111e-04   p_cons 1.191955e-01   p_joint 5.211806e-04

Joint ci ratio: 1.008519e-01	ci left: 4.961362e-04	ci right 5.491636e-04	k: 1509	n:2890000
Cons ci ratio: 6.267753e-03	ci left: 1.188387e-01	ci right 1.195863e-01	k: 344523	n:2890000
KS ci ratio: 1.044058e-01	ci left: 4.620844e-04	ci right 5.133196e-04	k: 1408	n:2890000
PABPC3   2890000 perm   4157 sec   (695 perm/sec)   p_kst 4.871972e-04   p_cons 1.192121e-01   p_joint 5.221453e-04

Joint ci ratio: 1.006189e-01	ci left: 4.967783e-04	ci right 5.497445e-04	k: 1516	n:2900000
Cons ci ratio: 6.257616e-03	ci left: 1.188166e-01	ci right 1.195628e-01	k: 345649	n:2900000
KS ci ratio: 1.042210e-01	ci left: 4.621701e-04	ci right 5.133186e-04	k: 1413	n:2900000
PABPC3   2900000 perm   4183 sec   (693 perm/sec)   p_kst 4.872414e-04   p_cons 1.191893e-01   p_joint 5.227586e-04

Joint ci ratio: 1.026709e-01	ci left: 4.749764e-04	ci right 5.267132e-04	k: 1456	n:2910000
Cons ci ratio: 6.246578e-03	ci left: 1.188265e-01	ci right 1.195715e-01	k: 346868	n:2910000
KS ci ratio: 1.039640e-01	ci left: 4.629248e-04	ci right 5.140227e-04	k: 1420	n:2910000
PABPC3   2910000 perm   4210 sec   (691 perm/sec)   p_kst 4.879725e-04   p_cons 1.191986e-01   p_joint 5.003436e-04

Joint ci ratio: 1.024602e-01	ci left: 4.753519e-04	ci right 5.270169e-04	k: 1462	n:2920000
Cons ci ratio: 6.236168e-03	ci left: 1.188173e-01	ci right 1.195609e-01	k: 348031	n:2920000
KS ci ratio: 1.037452e-01	ci left: 4.633409e-04	ci right 5.143705e-04	k: 1426	n:2920000
PABPC3   2920000 perm   4237 sec   (689 perm/sec)   p_kst 4.883562e-04   p_cons 1.191887e-01   p_joint 5.006849e-04

Joint ci ratio: 1.022855e-01	ci left: 4.753923e-04	ci right 5.269684e-04	k: 1467	n:2930000
Cons ci ratio: 6.225890e-03	ci left: 1.188053e-01	ci right 1.195476e-01	k: 349186	n:2930000
KS ci ratio: 1.036363e-01	ci left: 4.627568e-04	ci right 5.136654e-04	k: 1429	n:2930000
PABPC3   2930000 perm   4264 sec   (687 perm/sec)   p_kst 4.877133e-04   p_cons 1.191761e-01   p_joint 5.006826e-04

Joint ci ratio: 1.020079e-01	ci left: 4.764269e-04	ci right 5.279665e-04	k: 1475	n:2940000
Cons ci ratio: 6.215542e-03	ci left: 1.187976e-01	ci right 1.195386e-01	k: 350353	n:2940000
KS ci ratio: 1.033476e-01	ci left: 4.638335e-04	ci right 5.147098e-04	k: 1437	n:2940000
PABPC3   2940000 perm   4291 sec   (685 perm/sec)   p_kst 4.887755e-04   p_cons 1.191677e-01   p_joint 5.017007e-04

Joint ci ratio: 1.017668e-01	ci left: 4.771244e-04	ci right 5.286101e-04	k: 1482	n:2950000
Cons ci ratio: 6.204895e-03	ci left: 1.188017e-01	ci right 1.195414e-01	k: 351555	n:2950000
KS ci ratio: 1.030612e-01	ci left: 4.649031e-04	ci right 5.157468e-04	k: 1445	n:2950000
PABPC3   2950000 perm   4317 sec   (683 perm/sec)   p_kst 4.898305e-04   p_cons 1.191712e-01   p_joint 5.023729e-04

Joint ci ratio: 1.015616e-01	ci left: 4.774879e-04	ci right 5.289028e-04	k: 1488	n:2960000
Cons ci ratio: 6.194083e-03	ci left: 1.188132e-01	ci right 1.195517e-01	k: 352779	n:2960000
KS ci ratio: 1.029901e-01	ci left: 4.639907e-04	ci right 5.146975e-04	k: 1447	n:2960000
PABPC3   2960000 perm   4344 sec   (681 perm/sec)   p_kst 4.888514e-04   p_cons 1.191821e-01   p_joint 5.027027e-04

Joint ci ratio: 1.019736e-01	ci left: 4.719426e-04	ci right 5.229789e-04	k: 1476	n:2970000
Cons ci ratio: 6.183694e-03	ci left: 1.188122e-01	ci right 1.195495e-01	k: 353966	n:2970000
KS ci ratio: 1.027067e-01	ci left: 4.650528e-04	ci right 5.157274e-04	k: 1455	n:2970000
PABPC3   2970000 perm   4371 sec   (680 perm/sec)   p_kst 4.898990e-04   p_cons 1.191805e-01   p_joint 4.969697e-04

Joint ci ratio: 1.017671e-01	ci left: 4.723210e-04	ci right 5.232886e-04	k: 1482	n:2980000
Cons ci ratio: 6.172342e-03	ci left: 1.188457e-01	ci right 1.195819e-01	k: 355256	n:2980000
KS ci ratio: 1.025308e-01	ci left: 4.651270e-04	ci right 5.157176e-04	k: 1460	n:2980000
PABPC3   2980000 perm   4398 sec   (678 perm/sec)   p_kst 4.899329e-04   p_cons 1.192134e-01   p_joint 4.973154e-04

Joint ci ratio: 1.018703e-01	ci left: 4.697635e-04	ci right 5.205096e-04	k: 1479	n:2990000
Cons ci ratio: 6.162287e-03	ci left: 1.188369e-01	ci right 1.195718e-01	k: 356420	n:2990000
KS ci ratio: 1.022164e-01	ci left: 4.665044e-04	ci right 5.170799e-04	k: 1469	n:2990000
PABPC3   2990000 perm   4425 sec   (676 perm/sec)   p_kst 4.913043e-04   p_cons 1.192040e-01   p_joint 4.946488e-04

Joint ci ratio: 1.016987e-01	ci left: 4.698219e-04	ci right 5.204837e-04	k: 1484	n:3000000
Cons ci ratio: 6.152233e-03	ci left: 1.188299e-01	ci right 1.195635e-01	k: 357589	n:3000000
KS ci ratio: 1.021123e-01	ci left: 4.659238e-04	ci right 5.163818e-04	k: 1472	n:3000000
PABPC3   3000000 perm   4452 sec   (674 perm/sec)   p_kst 4.906667e-04   p_cons 1.191963e-01   p_joint 4.946667e-04

Joint ci ratio: 1.016987e-01	ci left: 4.682610e-04	ci right 5.187545e-04	k: 1484	n:3010000
Cons ci ratio: 6.141626e-03	ci left: 1.188434e-01	ci right 1.195759e-01	k: 358820	n:3010000
KS ci ratio: 1.018705e-01	ci left: 4.666421e-04	ci right 5.170511e-04	k: 1479	n:3010000
PABPC3   3010000 perm   4479 sec   (672 perm/sec)   p_kst 4.913621e-04   p_cons 1.192093e-01   p_joint 4.930233e-04

Joint ci ratio: 1.015621e-01	ci left: 4.680013e-04	ci right 5.183950e-04	k: 1488	n:3020000
Cons ci ratio: 6.132040e-03	ci left: 1.188238e-01	ci right 1.195550e-01	k: 359951	n:3020000
KS ci ratio: 1.016304e-01	ci left: 4.673559e-04	ci right 5.177159e-04	k: 1486	n:3020000
PABPC3   3020000 perm   4507 sec   (670 perm/sec)   p_kst 4.920530e-04   p_cons 1.191891e-01   p_joint 4.927152e-04

Joint ci ratio: 1.013580e-01	ci left: 4.683867e-04	ci right 5.187145e-04	k: 1494	n:3030000
Cons ci ratio: 6.122008e-03	ci left: 1.188212e-01	ci right 1.195512e-01	k: 361133	n:3030000
KS ci ratio: 1.015622e-01	ci left: 4.664567e-04	ci right 5.166841e-04	k: 1488	n:3030000
PABPC3   3030000 perm   4535 sec   (668 perm/sec)   p_kst 4.910891e-04   p_cons 1.191858e-01   p_joint 4.930693e-04

Joint ci ratio: 1.012565e-01	ci left: 4.678078e-04	ci right 5.180201e-04	k: 1497	n:3040000
Cons ci ratio: 6.111901e-03	ci left: 1.188228e-01	ci right 1.195516e-01	k: 362328	n:3040000
KS ci ratio: 1.014941e-01	ci left: 4.655635e-04	ci right 5.156591e-04	k: 1490	n:3040000
PABPC3   3040000 perm   4563 sec   (666 perm/sec)   p_kst 4.901316e-04   p_cons 1.191868e-01   p_joint 4.924342e-04

Joint ci ratio: 1.009537e-01	ci left: 4.691502e-04	ci right 5.193470e-04	k: 1506	n:3050000
Cons ci ratio: 6.102129e-03	ci left: 1.188146e-01	ci right 1.195422e-01	k: 363493	n:3050000
KS ci ratio: 1.011891e-01	ci left: 4.669131e-04	ci right 5.169940e-04	k: 1499	n:3050000
PABPC3   3050000 perm   4591 sec   (664 perm/sec)   p_kst 4.914754e-04   p_cons 1.191780e-01   p_joint 4.937705e-04

Joint ci ratio: 1.006535e-01	ci left: 4.704841e-04	ci right 5.206651e-04	k: 1515	n:3060000
Cons ci ratio: 6.091816e-03	ci left: 1.188267e-01	ci right 1.195531e-01	k: 364720	n:3060000
KS ci ratio: 1.009202e-01	ci left: 4.679356e-04	ci right 5.179849e-04	k: 1507	n:3060000
PABPC3   3060000 perm   4619 sec   (663 perm/sec)   p_kst 4.924837e-04   p_cons 1.191895e-01   p_joint 4.950980e-04

Joint ci ratio: 1.005210e-01	ci left: 4.702217e-04	ci right 5.203048e-04	k: 1519	n:3070000
Cons ci ratio: 6.082074e-03	ci left: 1.188208e-01	ci right 1.195460e-01	k: 365892	n:3070000
KS ci ratio: 1.008534e-01	ci left: 4.670464e-04	ci right 5.169655e-04	k: 1509	n:3070000
PABPC3   3070000 perm   4646 sec   (661 perm/sec)   p_kst 4.915309e-04   p_cons 1.191831e-01   p_joint 4.947883e-04

Joint ci ratio: 1.016993e-01	ci left: 4.576186e-04	ci right 5.069648e-04	k: 1484	n:3080000
Cons ci ratio: 6.072257e-03	ci left: 1.188192e-01	ci right 1.195432e-01	k: 367077	n:3080000
KS ci ratio: 1.007534e-01	ci left: 4.664795e-04	ci right 5.162857e-04	k: 1512	n:3080000
PABPC3   3080000 perm   4675 sec   (659 perm/sec)   p_kst 4.909091e-04   p_cons 1.191808e-01   p_joint 4.818182e-04

Joint ci ratio: 1.016310e-01	ci left: 4.567684e-04	ci right 5.059879e-04	k: 1486	n:3090000
Cons ci ratio: 6.062365e-03	ci left: 1.188218e-01	ci right 1.195446e-01	k: 368275	n:3090000
KS ci ratio: 1.007202e-01	ci left: 4.652853e-04	ci right 5.149466e-04	k: 1513	n:3090000
PABPC3   3090000 perm   4703 sec   (657 perm/sec)   p_kst 4.896440e-04   p_cons 1.191828e-01   p_joint 4.809061e-04

Joint ci ratio: 1.015286e-01	ci left: 4.562381e-04	ci right 5.053480e-04	k: 1489	n:3100000
Cons ci ratio: 6.052392e-03	ci left: 1.188289e-01	ci right 1.195506e-01	k: 369487	n:3100000
KS ci ratio: 1.004881e-01	ci left: 4.659856e-04	ci right 5.156004e-04	k: 1520	n:3100000
PABPC3   3100000 perm   4730 sec   (655 perm/sec)   p_kst 4.903226e-04   p_cons 1.191894e-01   p_joint 4.803226e-04

Joint ci ratio: 1.014266e-01	ci left: 4.557112e-04	ci right 5.047122e-04	k: 1492	n:3110000
Cons ci ratio: 6.042505e-03	ci left: 1.188346e-01	ci right 1.195552e-01	k: 370695	n:3110000
KS ci ratio: 1.002577e-01	ci left: 4.666816e-04	ci right 5.162497e-04	k: 1527	n:3110000
PABPC3   3110000 perm   4758 sec   (654 perm/sec)   p_kst 4.909968e-04   p_cons 1.191945e-01   p_joint 4.797428e-04

Joint ci ratio: 1.012910e-01	ci left: 4.555002e-04	ci right 5.044090e-04	k: 1496	n:3120000
Cons ci ratio: 6.033310e-03	ci left: 1.188179e-01	ci right 1.195373e-01	k: 371833	n:3120000
KS ci ratio: 1.001922e-01	ci left: 4.658108e-04	ci right 5.152522e-04	k: 1529	n:3120000
PABPC3   3120000 perm   4786 sec   (652 perm/sec)   p_kst 4.900641e-04   p_cons 1.191772e-01   p_joint 4.794872e-04

Joint ci ratio: 1.011897e-01	ci left: 4.549791e-04	ci right 5.037802e-04	k: 1499	n:3130000
Cons ci ratio: 6.023644e-03	ci left: 1.188192e-01	ci right 1.195374e-01	k: 373027	n:3130000
KS ci ratio: 1.000615e-01	ci left: 4.655685e-04	ci right 5.149160e-04	k: 1533	n:3130000
PABPC3   3130000 perm   4814 sec   (650 perm/sec)   p_kst 4.897764e-04   p_cons 1.191780e-01   p_joint 4.789137e-04

Joint ci ratio: 1.010215e-01	ci left: 4.550822e-04	ci right 5.038084e-04	k: 1504	n:3140000
Cons ci ratio: 6.014070e-03	ci left: 1.188189e-01	ci right 1.195359e-01	k: 374216	n:3140000
KS ci ratio: 9.996380e-02	ci left: 4.650173e-04	ci right 5.142554e-04	k: 1536	n:3140000
PABPC3   3140000 perm   4842 sec   (648 perm/sec)   p_kst 4.891720e-04   p_cons 1.191771e-01   p_joint 4.789809e-04

Joint ci ratio: 1.008875e-01	ci left: 4.548753e-04	ci right 5.035109e-04	k: 1508	n:3150000
Cons ci ratio: 6.004324e-03	ci left: 1.188262e-01	ci right 1.195421e-01	k: 375429	n:3150000
KS ci ratio: 9.976923e-02	ci left: 4.653982e-04	ci right 5.145752e-04	k: 1542	n:3150000
PABPC3   3150000 perm   4871 sec   (647 perm/sec)   p_kst 4.895238e-04   p_cons 1.191838e-01   p_joint 4.787302e-04

Joint ci ratio: 1.008207e-01	ci left: 4.540528e-04	ci right 5.025664e-04	k: 1510	n:3160000
Cons ci ratio: 5.994444e-03	ci left: 1.188398e-01	ci right 1.195546e-01	k: 376662	n:3160000
KS ci ratio: 9.973698e-02	ci left: 4.642340e-04	ci right 5.132711e-04	k: 1543	n:3160000
PABPC3   3160000 perm   4900 sec   (645 perm/sec)   p_kst 4.882911e-04   p_cons 1.191968e-01   p_joint 4.778481e-04

Joint ci ratio: 1.007208e-01	ci left: 4.535429e-04	ci right 5.019513e-04	k: 1513	n:3170000
Cons ci ratio: 5.985260e-03	ci left: 1.188306e-01	ci right 1.195442e-01	k: 377823	n:3170000
KS ci ratio: 9.951163e-02	ci left: 4.649227e-04	ci right 5.139152e-04	k: 1550	n:3170000
PABPC3   3170000 perm   4928 sec   (643 perm/sec)   p_kst 4.889590e-04   p_cons 1.191871e-01   p_joint 4.772871e-04

Joint ci ratio: 1.004557e-01	ci left: 4.545691e-04	ci right 5.029518e-04	k: 1521	n:3180000
Cons ci ratio: 5.975715e-03	ci left: 1.188356e-01	ci right 1.195481e-01	k: 379029	n:3180000
KS ci ratio: 9.925593e-02	ci left: 4.659139e-04	ci right 5.148773e-04	k: 1558	n:3180000
PABPC3   3180000 perm   4957 sec   (642 perm/sec)   p_kst 4.899371e-04   p_cons 1.191915e-01   p_joint 4.783019e-04

Joint ci ratio: 1.003569e-01	ci left: 4.540610e-04	ci right 5.023392e-04	k: 1524	n:3190000
Cons ci ratio: 5.966786e-03	ci left: 1.188205e-01	ci right 1.195319e-01	k: 380171	n:3190000
KS ci ratio: 9.912885e-02	ci left: 4.656762e-04	ci right 5.145483e-04	k: 1562	n:3190000
PABPC3   3190000 perm   4986 sec   (640 perm/sec)   p_kst 4.896552e-04   p_cons 1.191759e-01   p_joint 4.777429e-04

Joint ci ratio: 1.001600e-01	ci left: 4.544700e-04	ci right 5.026914e-04	k: 1530	n:3200000
Cons ci ratio: 5.957010e-03	ci left: 1.188367e-01	ci right 1.195471e-01	k: 381413	n:3200000
KS ci ratio: 9.900227e-02	ci left: 4.654400e-04	ci right 5.142213e-04	k: 1566	n:3200000
PABPC3   3200000 perm   5014 sec   (638 perm/sec)   p_kst 4.893750e-04   p_cons 1.191916e-01   p_joint 4.781250e-04

Joint ci ratio: 1.000295e-01	ci left: 4.542691e-04	ci right 5.024027e-04	k: 1534	n:3210000
Cons ci ratio: 5.947591e-03	ci left: 1.188420e-01	ci right 1.195512e-01	k: 382620	n:3210000
KS ci ratio: 9.881325e-02	ci left: 4.658129e-04	ci right 5.145347e-04	k: 1572	n:3210000
PABPC3   3210000 perm   5043 sec   (637 perm/sec)   p_kst 4.897196e-04   p_cons 1.191963e-01   p_joint 4.778816e-04

Joint ci ratio: 9.980213e-02	ci left: 4.549780e-04	ci right 5.030706e-04	k: 1541	n:3220000
Cons ci ratio: 5.938454e-03	ci left: 1.188388e-01	ci right 1.195469e-01	k: 383800	n:3220000
KS ci ratio: 9.865658e-02	ci left: 4.658808e-04	ci right 5.145279e-04	k: 1577	n:3220000
PABPC3   3220000 perm   5072 sec   (635 perm/sec)   p_kst 4.897516e-04   p_cons 1.191925e-01   p_joint 4.785714e-04

Outputting figure to mutsig2_images.part000000000125/PABPC3.12_1900_3220000_0.00048975_0.11919_0.00047857.png
                gene_name: PABPC3
               theta_stop: 0.100 
                    nperm: 3220000 
                     p_ks: 0.00049 
        ci_ks_bounds_left: 0.00047 
       ci_ks_bounds_right: 0.00051 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.00048 
     ci_joint_bounds_left: 0.00045 
    ci_joint_bounds_right: 0.00050 

Current progress: 7 percent done.
PAPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
PAPPA   10000 perm   3 sec   (3772 perm/sec)   p_kst 4.380000e-02   p_cons 9.840000e-02   p_joint 3.420000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
KS ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
PAPPA   20000 perm   6 sec   (3445 perm/sec)   p_kst 4.195000e-02   p_cons 9.545000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.106328e-01	ci left: 3.794031e-02	ci right 4.241596e-02	k: 1204	n:30000
Cons ci ratio: 6.967708e-02	ci left: 9.209840e-02	ci right 9.878018e-02	k: 2862	n:30000
KS ci ratio: 1.089940e-01	ci left: 3.907619e-02	ci right 4.361318e-02	k: 1239	n:30000
PAPPA   30000 perm   9 sec   (3322 perm/sec)   p_kst 4.130000e-02   p_cons 9.540000e-02   p_joint 4.013333e-02

Joint ci ratio: 8.897941e-02	ci left: 4.421228e-02	ci right 4.835390e-02	k: 1850	n:40000
Cons ci ratio: 5.986101e-02	ci left: 9.391918e-02	ci right 9.973950e-02	k: 3872	n:40000
KS ci ratio: 9.114304e-02	ci left: 4.218195e-02	ci right 4.623455e-02	k: 1767	n:40000
PAPPA   40000 perm   12 sec   (3236 perm/sec)   p_kst 4.417500e-02   p_cons 9.680000e-02   p_joint 4.625000e-02

Outputting figure to mutsig2_images.part000000000125/PAPPA.12_4972_40000_0.044175_0.0968_0.04625.png
                gene_name: PAPPA
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 8 percent done.
PALM2-AKAP2
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
Cons ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
KS ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
PALM2-AKAP2   10000 perm   2 sec   (4332 perm/sec)   p_kst 7.653000e-01   p_cons 2.593000e-01   p_joint 7.541000e-01

Outputting figure to mutsig2_images.part000000000125/PALM2-AKAP2.8_3356_10000_0.7653_0.2593_0.7541.png
                gene_name: PALM2-AKAP2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 10 percent done.
P2RY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.194990e-02	ci left: 5.911232e-01	ci right 6.104181e-01	k: 6008	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
P2RY10   10000 perm   2 sec   (5646 perm/sec)   p_kst 7.968000e-01   p_cons 6.008000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/P2RY10.10_1024_10000_0.7968_0.6008_1.png
                gene_name: P2RY10
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
PALB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
PALB2   10000 perm   2 sec   (4068 perm/sec)   p_kst 1.101000e-01   p_cons 3.826000e-01   p_joint 1.050000e-01

Joint ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
Cons ci ratio: 3.704259e-02	ci left: 3.522480e-01	ci right 3.655930e-01	k: 7178	n:20000
KS ci ratio: 7.832365e-02	ci left: 1.069239e-01	ci right 1.156895e-01	k: 2225	n:20000
PALB2   20000 perm   5 sec   (3753 perm/sec)   p_kst 1.112500e-01   p_cons 3.589000e-01   p_joint 1.109000e-01

Outputting figure to mutsig2_images.part000000000125/PALB2.9_3613_20000_0.11125_0.3589_0.1109.png
                gene_name: PALB2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
PALLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
Cons ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
KS ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
PALLD   10000 perm   2 sec   (4633 perm/sec)   p_kst 8.058000e-01   p_cons 7.827000e-01   p_joint 8.890000e-01

Outputting figure to mutsig2_images.part000000000125/PALLD.8_4136_10000_0.8058_0.7827_0.889.png
                gene_name: PALLD
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 15 percent done.
PAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
Cons ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
KS ci ratio: 2.109147e-02	ci left: 7.671924e-01	ci right 7.836469e-01	k: 7755	n:10000
PAK3   10000 perm   2 sec   (5639 perm/sec)   p_kst 7.755000e-01   p_cons 2.182000e-01   p_joint 7.313000e-01

Outputting figure to mutsig2_images.part000000000125/PAK3.7_1807_10000_0.7755_0.2182_0.7313.png
                gene_name: PAK3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 16 percent done.
PALMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
Cons ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
KS ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
PALMD   10000 perm   2 sec   (5647 perm/sec)   p_kst 6.651000e-01   p_cons 3.163000e-01   p_joint 5.945000e-01

Outputting figure to mutsig2_images.part000000000125/PALMD.6_1688_10000_0.6651_0.3163_0.5945.png
                gene_name: PALMD
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 18 percent done.
PAMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
Cons ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
KS ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
PAMR1   10000 perm   2 sec   (4835 perm/sec)   p_kst 4.589000e-01   p_cons 8.350000e-02   p_joint 2.271000e-01

Joint ci ratio: 4.338152e-02	ci left: 2.835682e-01	ci right 2.961930e-01	k: 5797	n:20000
Cons ci ratio: 9.162077e-02	ci left: 7.999553e-02	ci right 8.772596e-02	k: 1676	n:20000
KS ci ratio: 2.880484e-02	ci left: 4.738038e-01	ci right 4.877018e-01	k: 9615	n:20000
PAMR1   20000 perm   5 sec   (4423 perm/sec)   p_kst 4.807500e-01   p_cons 8.380000e-02   p_joint 2.898500e-01

Outputting figure to mutsig2_images.part000000000125/PAMR1.6_2262_20000_0.48075_0.0838_0.28985.png
                gene_name: PAMR1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 20 percent done.
PAPOLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
PAPOLA   10000 perm   2 sec   (5107 perm/sec)   p_kst 6.052000e-01   p_cons 8.639000e-01   p_joint 8.419000e-01

Outputting figure to mutsig2_images.part000000000125/PAPOLA.6_2326_10000_0.6052_0.8639_0.8419.png
                gene_name: PAPOLA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 21 percent done.
PAPOLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
KS ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
PAPOLG   10000 perm   2 sec   (4859 perm/sec)   p_kst 3.338000e-01   p_cons 1.738000e-01   p_joint 3.070000e-01

Outputting figure to mutsig2_images.part000000000125/PAPOLG.6_2299_10000_0.3338_0.1738_0.307.png
                gene_name: PAPOLG
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 23 percent done.
P2RX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
P2RX7   10000 perm   2 sec   (5320 perm/sec)   p_kst 2.700000e-03   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
Cons ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
KS ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
P2RX7   20000 perm   4 sec   (4832 perm/sec)   p_kst 2.650000e-03   p_cons 1.300000e-03   p_joint 6.200000e-03

Joint ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
Cons ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
KS ci ratio: 4.102971e-01	ci left: 2.413024e-03	ci right 3.686241e-03	k: 90	n:30000
P2RX7   30000 perm   7 sec   (4602 perm/sec)   p_kst 3.000000e-03   p_cons 1.200000e-03   p_joint 3.866667e-03

Joint ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
Cons ci ratio: 5.188401e-01	ci left: 1.057713e-03	ci right 1.817636e-03	k: 56	n:40000
KS ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
P2RX7   40000 perm   9 sec   (4466 perm/sec)   p_kst 3.250000e-03   p_cons 1.400000e-03   p_joint 3.050000e-03

Joint ci ratio: 3.433561e-01	ci left: 2.154454e-03	ci right 3.064827e-03	k: 129	n:50000
Cons ci ratio: 4.681969e-01	ci left: 1.073876e-03	ci right 1.746158e-03	k: 69	n:50000
KS ci ratio: 3.084384e-01	ci left: 2.723992e-03	ci right 3.735045e-03	k: 160	n:50000
P2RX7   50000 perm   12 sec   (4334 perm/sec)   p_kst 3.200000e-03   p_cons 1.380000e-03   p_joint 2.580000e-03

Joint ci ratio: 3.134403e-01	ci left: 2.193063e-03	ci right 3.022883e-03	k: 155	n:60000
Cons ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
KS ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
P2RX7   60000 perm   14 sec   (4230 perm/sec)   p_kst 3.400000e-03   p_cons 1.566667e-03   p_joint 2.583333e-03

Joint ci ratio: 2.005438e-01	ci left: 4.884113e-03	ci right 5.986065e-03	k: 379	n:70000
Cons ci ratio: 3.786683e-01	ci left: 1.239934e-03	ci right 1.831194e-03	k: 106	n:70000
KS ci ratio: 2.510295e-01	ci left: 3.035877e-03	ci right 3.920356e-03	k: 242	n:70000
P2RX7   70000 perm   17 sec   (4140 perm/sec)   p_kst 3.457143e-03   p_cons 1.514286e-03   p_joint 5.414286e-03

Joint ci ratio: 1.907725e-01	ci left: 4.749083e-03	ci right 5.762305e-03	k: 419	n:80000
Cons ci ratio: 3.448562e-01	ci left: 1.335010e-03	ci right 1.902117e-03	k: 128	n:80000
KS ci ratio: 2.326059e-01	ci left: 3.126152e-03	ci right 3.960490e-03	k: 282	n:80000
P2RX7   80000 perm   20 sec   (4063 perm/sec)   p_kst 3.525000e-03   p_cons 1.600000e-03   p_joint 5.237500e-03

Joint ci ratio: 1.950736e-01	ci left: 4.030917e-03	ci right 4.912602e-03	k: 401	n:90000
Cons ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
KS ci ratio: 2.218972e-01	ci left: 3.072200e-03	ci right 3.849236e-03	k: 310	n:90000
P2RX7   90000 perm   23 sec   (3982 perm/sec)   p_kst 3.444444e-03   p_cons 1.555556e-03   p_joint 4.455556e-03

Joint ci ratio: 2.031374e-01	ci left: 3.333149e-03	ci right 4.096083e-03	k: 370	n:100000
Cons ci ratio: 2.927308e-01	ci left: 1.528290e-03	ci right 2.061274e-03	k: 178	n:100000
KS ci ratio: 2.131748e-01	ci left: 3.010808e-03	ci right 3.738468e-03	k: 336	n:100000
P2RX7   100000 perm   26 sec   (3910 perm/sec)   p_kst 3.360000e-03   p_cons 1.780000e-03   p_joint 3.700000e-03

Joint ci ratio: 1.953974e-01	ci left: 3.289251e-03	ci right 4.010036e-03	k: 400	n:110000
Cons ci ratio: 2.769325e-01	ci left: 1.566640e-03	ci right 2.078381e-03	k: 199	n:110000
KS ci ratio: 2.010088e-01	ci left: 3.099144e-03	ci right 3.800167e-03	k: 378	n:110000
P2RX7   110000 perm   29 sec   (3843 perm/sec)   p_kst 3.436364e-03   p_cons 1.809091e-03   p_joint 3.636364e-03

Joint ci ratio: 1.909406e-01	ci left: 3.165803e-03	ci right 3.841875e-03	k: 419	n:120000
Cons ci ratio: 2.683544e-01	ci left: 1.537013e-03	ci right 2.020908e-03	k: 212	n:120000
KS ci ratio: 1.935001e-01	ci left: 3.078534e-03	ci right 3.745820e-03	k: 408	n:120000
P2RX7   120000 perm   32 sec   (3780 perm/sec)   p_kst 3.400000e-03   p_cons 1.766667e-03   p_joint 3.491667e-03

Joint ci ratio: 2.086528e-01	ci left: 2.425218e-03	ci right 2.997323e-03	k: 351	n:130000
Cons ci ratio: 2.582474e-01	ci left: 1.540922e-03	ci right 2.004832e-03	k: 229	n:130000
KS ci ratio: 1.852980e-01	ci left: 3.112854e-03	ci right 3.755764e-03	k: 445	n:130000
P2RX7   130000 perm   35 sec   (3706 perm/sec)   p_kst 3.423077e-03   p_cons 1.761538e-03   p_joint 2.700000e-03

Joint ci ratio: 1.989885e-01	ci left: 2.489243e-03	ci right 3.045954e-03	k: 386	n:140000
Cons ci ratio: 2.477002e-01	ci left: 1.564662e-03	ci right 2.013519e-03	k: 249	n:140000
KS ci ratio: 1.786151e-01	ci left: 3.122307e-03	ci right 3.741399e-03	k: 479	n:140000
P2RX7   140000 perm   38 sec   (3645 perm/sec)   p_kst 3.421429e-03   p_cons 1.778571e-03   p_joint 2.757143e-03

Joint ci ratio: 1.945226e-01	ci left: 2.437376e-03	ci right 2.968803e-03	k: 404	n:150000
Cons ci ratio: 2.387914e-01	ci left: 1.579301e-03	ci right 2.013653e-03	k: 268	n:150000
KS ci ratio: 1.722707e-01	ci left: 3.143619e-03	ci right 3.742495e-03	k: 515	n:150000
P2RX7   150000 perm   42 sec   (3586 perm/sec)   p_kst 3.433333e-03   p_cons 1.786667e-03   p_joint 2.693333e-03

Joint ci ratio: 1.898946e-01	ci left: 2.404021e-03	ci right 2.914266e-03	k: 424	n:160000
Cons ci ratio: 2.303792e-01	ci left: 1.598252e-03	ci right 2.020129e-03	k: 288	n:160000
KS ci ratio: 1.680925e-01	ci left: 3.102716e-03	ci right 3.678011e-03	k: 541	n:160000
P2RX7   160000 perm   45 sec   (3530 perm/sec)   p_kst 3.381250e-03   p_cons 1.800000e-03   p_joint 2.650000e-03

Joint ci ratio: 2.032935e-01	ci left: 1.960531e-03	ci right 2.409657e-03	k: 370	n:170000
Cons ci ratio: 2.220787e-01	ci left: 1.626320e-03	ci right 2.038025e-03	k: 310	n:170000
KS ci ratio: 1.633407e-01	ci left: 3.100632e-03	ci right 3.657693e-03	k: 573	n:170000
P2RX7   170000 perm   49 sec   (3476 perm/sec)   p_kst 3.370588e-03   p_cons 1.823529e-03   p_joint 2.176471e-03

Joint ci ratio: 2.061082e-01	ci left: 1.798889e-03	ci right 2.217410e-03	k: 360	n:180000
Cons ci ratio: 2.165789e-01	ci left: 1.619975e-03	ci right 2.018567e-03	k: 326	n:180000
KS ci ratio: 1.589704e-01	ci left: 3.098983e-03	ci right 3.639429e-03	k: 605	n:180000
P2RX7   180000 perm   53 sec   (3424 perm/sec)   p_kst 3.361111e-03   p_cons 1.811111e-03   p_joint 2.000000e-03

Joint ci ratio: 2.081509e-01	ci left: 1.669268e-03	ci right 2.061970e-03	k: 353	n:190000
Cons ci ratio: 2.120888e-01	ci left: 1.604441e-03	ci right 1.989962e-03	k: 340	n:190000
KS ci ratio: 1.529024e-01	ci left: 3.183724e-03	ci right 3.715814e-03	k: 654	n:190000
P2RX7   190000 perm   56 sec   (3377 perm/sec)   p_kst 3.442105e-03   p_cons 1.789474e-03   p_joint 1.857895e-03

Joint ci ratio: 2.093489e-01	ci left: 1.566841e-03	ci right 1.937840e-03	k: 349	n:200000
Cons ci ratio: 2.084558e-01	ci left: 1.581057e-03	ci right 1.953622e-03	k: 352	n:200000
KS ci ratio: 1.498480e-01	ci left: 3.154421e-03	ci right 3.670138e-03	k: 681	n:200000
P2RX7   200000 perm   60 sec   (3330 perm/sec)   p_kst 3.405000e-03   p_cons 1.760000e-03   p_joint 1.745000e-03

Joint ci ratio: 2.090587e-01	ci left: 1.496736e-03	ci right 1.850581e-03	k: 350	n:210000
Cons ci ratio: 2.025173e-01	ci left: 1.600626e-03	ci right 1.965728e-03	k: 373	n:210000
KS ci ratio: 1.461446e-01	ci left: 3.164707e-03	ci right 3.668202e-03	k: 716	n:210000
P2RX7   210000 perm   64 sec   (3282 perm/sec)   p_kst 3.409524e-03   p_cons 1.776190e-03   p_joint 1.666667e-03

Joint ci ratio: 2.044511e-01	ci left: 1.497665e-03	ci right 1.842950e-03	k: 366	n:220000
Cons ci ratio: 1.973094e-01	ci left: 1.614230e-03	ci right 1.971828e-03	k: 393	n:220000
KS ci ratio: 1.439568e-01	ci left: 3.117221e-03	ci right 3.605099e-03	k: 738	n:220000
P2RX7   220000 perm   68 sec   (3237 perm/sec)   p_kst 3.354545e-03   p_cons 1.786364e-03   p_joint 1.663636e-03

Joint ci ratio: 2.067277e-01	ci left: 1.399549e-03	ci right 1.726262e-03	k: 358	n:230000
Cons ci ratio: 1.946144e-01	ci left: 1.589524e-03	ci right 1.936269e-03	k: 404	n:230000
KS ci ratio: 1.415846e-01	ci left: 3.086499e-03	ci right 3.560936e-03	k: 763	n:230000
P2RX7   230000 perm   72 sec   (3195 perm/sec)   p_kst 3.317391e-03   p_cons 1.756522e-03   p_joint 1.556522e-03

Joint ci ratio: 2.011974e-01	ci left: 1.420314e-03	ci right 1.741915e-03	k: 378	n:240000
Cons ci ratio: 1.917960e-01	ci left: 1.570874e-03	ci right 1.908009e-03	k: 416	n:240000
KS ci ratio: 1.382748e-01	ci left: 3.106667e-03	ci right 3.572121e-03	k: 800	n:240000
P2RX7   240000 perm   76 sec   (3154 perm/sec)   p_kst 3.333333e-03   p_cons 1.733333e-03   p_joint 1.575000e-03

Joint ci ratio: 2.020061e-01	ci left: 1.352103e-03	ci right 1.659640e-03	k: 375	n:250000
Cons ci ratio: 1.882196e-01	ci left: 1.568994e-03	ci right 1.898729e-03	k: 432	n:250000
KS ci ratio: 1.360034e-01	ci left: 3.086693e-03	ci right 3.540943e-03	k: 827	n:250000
P2RX7   250000 perm   80 sec   (3113 perm/sec)   p_kst 3.308000e-03   p_cons 1.728000e-03   p_joint 1.500000e-03

Joint ci ratio: 1.986028e-01	ci left: 1.347591e-03	ci right 1.648313e-03	k: 388	n:260000
Cons ci ratio: 1.844251e-01	ci left: 1.574651e-03	ci right 1.898157e-03	k: 450	n:260000
KS ci ratio: 1.332940e-01	ci left: 3.094339e-03	ci right 3.539923e-03	k: 861	n:260000
P2RX7   260000 perm   85 sec   (3071 perm/sec)   p_kst 3.311538e-03   p_cons 1.730769e-03   p_joint 1.492308e-03

Joint ci ratio: 1.951230e-01	ci left: 1.346976e-03	ci right 1.641669e-03	k: 402	n:270000
Cons ci ratio: 1.806583e-01	ci left: 1.583486e-03	ci right 1.901436e-03	k: 469	n:270000
KS ci ratio: 1.309604e-01	ci left: 3.090753e-03	ci right 3.527423e-03	k: 892	n:270000
P2RX7   270000 perm   89 sec   (3032 perm/sec)   p_kst 3.303704e-03   p_cons 1.737037e-03   p_joint 1.488889e-03

Joint ci ratio: 2.014865e-01	ci left: 1.214008e-03	ci right 1.489337e-03	k: 377	n:280000
Cons ci ratio: 1.760348e-01	ci left: 1.612235e-03	ci right 1.926792e-03	k: 494	n:280000
KS ci ratio: 1.288153e-01	ci left: 3.084030e-03	ci right 3.512067e-03	k: 922	n:280000
P2RX7   280000 perm   94 sec   (2994 perm/sec)   p_kst 3.292857e-03   p_cons 1.764286e-03   p_joint 1.346429e-03

Joint ci ratio: 2.094060e-01	ci left: 1.080551e-03	ci right 1.336481e-03	k: 349	n:290000
Cons ci ratio: 1.730879e-01	ci left: 1.612701e-03	ci right 1.921531e-03	k: 511	n:290000
KS ci ratio: 1.260445e-01	ci left: 3.114560e-03	ci right 3.536842e-03	k: 963	n:290000
P2RX7   290000 perm   98 sec   (2957 perm/sec)   p_kst 3.320690e-03   p_cons 1.762069e-03   p_joint 1.203448e-03

Joint ci ratio: 2.273485e-01	ci left: 8.775012e-04	ci right 1.105649e-03	k: 296	n:300000
Cons ci ratio: 1.709328e-01	ci left: 1.600411e-03	ci right 1.902678e-03	k: 524	n:300000
KS ci ratio: 1.246327e-01	ci left: 3.081772e-03	ci right 3.494582e-03	k: 985	n:300000
P2RX7   300000 perm   103 sec   (2921 perm/sec)   p_kst 3.283333e-03   p_cons 1.746667e-03   p_joint 9.866667e-04

Joint ci ratio: 2.236150e-01	ci left: 8.796310e-04	ci right 1.104059e-03	k: 306	n:310000
Cons ci ratio: 1.676124e-01	ci left: 1.613658e-03	ci right 1.911909e-03	k: 545	n:310000
KS ci ratio: 1.226584e-01	ci left: 3.082393e-03	ci right 3.488271e-03	k: 1017	n:310000
P2RX7   310000 perm   107 sec   (2885 perm/sec)   p_kst 3.280645e-03   p_cons 1.758065e-03   p_joint 9.870968e-04

Joint ci ratio: 2.190247e-01	ci left: 8.905163e-04	ci right 1.112430e-03	k: 319	n:320000
Cons ci ratio: 1.658018e-01	ci left: 1.599165e-03	ci right 1.891226e-03	k: 557	n:320000
KS ci ratio: 1.208906e-01	ci left: 3.076962e-03	ci right 3.475868e-03	k: 1047	n:320000
P2RX7   320000 perm   112 sec   (2850 perm/sec)   p_kst 3.271875e-03   p_cons 1.740625e-03   p_joint 9.968750e-04

Joint ci ratio: 2.166687e-01	ci left: 8.835853e-04	ci right 1.101088e-03	k: 326	n:330000
Cons ci ratio: 1.640486e-01	ci left: 1.585568e-03	ci right 1.871781e-03	k: 569	n:330000
KS ci ratio: 1.193081e-01	ci left: 3.066019e-03	ci right 3.457936e-03	k: 1075	n:330000
P2RX7   330000 perm   117 sec   (2816 perm/sec)   p_kst 3.257576e-03   p_cons 1.724242e-03   p_joint 9.878788e-04

Joint ci ratio: 2.134298e-01	ci left: 8.854254e-04	ci right 1.099697e-03	k: 336	n:340000
Cons ci ratio: 1.605634e-01	ci left: 1.609478e-03	ci right 1.893240e-03	k: 594	n:340000
KS ci ratio: 1.176260e-01	ci left: 3.064316e-03	ci right 3.450109e-03	k: 1106	n:340000
P2RX7   340000 perm   122 sec   (2782 perm/sec)   p_kst 3.252941e-03   p_cons 1.747059e-03   p_joint 9.882353e-04

Joint ci ratio: 2.118654e-01	ci left: 8.736519e-04	ci right 1.083323e-03	k: 341	n:350000
Cons ci ratio: 1.585776e-01	ci left: 1.604638e-03	ci right 1.883715e-03	k: 609	n:350000
KS ci ratio: 1.156062e-01	ci left: 3.084945e-03	ci right 3.466210e-03	k: 1145	n:350000
P2RX7   350000 perm   127 sec   (2748 perm/sec)   p_kst 3.271429e-03   p_cons 1.740000e-03   p_joint 9.742857e-04

Joint ci ratio: 2.131195e-01	ci left: 8.388623e-04	ci right 1.041531e-03	k: 337	n:360000
Cons ci ratio: 1.564131e-01	ci left: 1.605426e-03	ci right 1.880471e-03	k: 626	n:360000
KS ci ratio: 1.142688e-01	ci left: 3.072094e-03	ci right 3.447083e-03	k: 1172	n:360000
P2RX7   360000 perm   133 sec   (2715 perm/sec)   p_kst 3.255556e-03   p_cons 1.738889e-03   p_joint 9.361111e-04

Joint ci ratio: 2.137561e-01	ci left: 8.110726e-04	ci right 1.007690e-03	k: 335	n:370000
Cons ci ratio: 1.538570e-01	ci left: 1.616591e-03	ci right 1.888605e-03	k: 647	n:370000
KS ci ratio: 1.132613e-01	ci left: 3.044204e-03	ci right 3.412293e-03	k: 1193	n:370000
P2RX7   370000 perm   138 sec   (2684 perm/sec)   p_kst 3.224324e-03   p_cons 1.748649e-03   p_joint 9.054054e-04

Joint ci ratio: 2.124964e-01	ci left: 7.996926e-04	ci right 9.922597e-04	k: 339	n:380000
Cons ci ratio: 1.518778e-01	ci left: 1.617074e-03	ci right 1.885352e-03	k: 664	n:380000
KS ci ratio: 1.119109e-01	ci left: 3.038259e-03	ci right 3.400960e-03	k: 1222	n:380000
P2RX7   380000 perm   143 sec   (2654 perm/sec)   p_kst 3.215789e-03   p_cons 1.747368e-03   p_joint 8.921053e-04

Joint ci ratio: 2.112587e-01	ci left: 7.888993e-04	ci right 9.776177e-04	k: 343	n:390000
Cons ci ratio: 1.501938e-01	ci left: 1.612619e-03	ci right 1.876924e-03	k: 679	n:390000
KS ci ratio: 1.108745e-01	ci left: 3.017685e-03	ci right 3.374375e-03	k: 1245	n:390000
P2RX7   390000 perm   149 sec   (2625 perm/sec)   p_kst 3.192308e-03   p_cons 1.741026e-03   p_joint 8.794872e-04

Joint ci ratio: 2.125012e-01	ci left: 7.597062e-04	ci right 9.426491e-04	k: 339	n:400000
Cons ci ratio: 1.485647e-01	ci left: 1.608401e-03	ci right 1.868902e-03	k: 694	n:400000
KS ci ratio: 1.093489e-01	ci left: 3.027333e-03	ci right 3.379924e-03	k: 1280	n:400000
P2RX7   400000 perm   154 sec   (2597 perm/sec)   p_kst 3.200000e-03   p_cons 1.735000e-03   p_joint 8.475000e-04

Joint ci ratio: 2.193922e-01	ci left: 6.927240e-04	ci right 8.656766e-04	k: 318	n:410000
Cons ci ratio: 1.465743e-01	ci left: 1.613803e-03	ci right 1.871370e-03	k: 713	n:410000
KS ci ratio: 1.078846e-01	ci left: 3.036544e-03	ci right 3.385170e-03	k: 1315	n:410000
P2RX7   410000 perm   160 sec   (2569 perm/sec)   p_kst 3.207317e-03   p_cons 1.739024e-03   p_joint 7.756098e-04

Joint ci ratio: 2.082576e-01	ci left: 7.551069e-04	ci right 9.328481e-04	k: 353	n:420000
Cons ci ratio: 1.653918e-01	ci left: 1.225239e-03	ci right 1.448398e-03	k: 560	n:420000
KS ci ratio: 1.064776e-01	ci left: 3.045345e-03	ci right 3.390136e-03	k: 1350	n:420000
P2RX7   420000 perm   165 sec   (2541 perm/sec)   p_kst 3.214286e-03   p_cons 1.333333e-03   p_joint 8.404762e-04

Joint ci ratio: 2.094473e-01	ci left: 7.287294e-04	ci right 9.013673e-04	k: 349	n:430000
Cons ci ratio: 1.636510e-01	ci left: 1.223503e-03	ci right 1.443770e-03	k: 572	n:430000
KS ci ratio: 1.052386e-01	ci left: 3.046971e-03	ci right 3.387684e-03	k: 1382	n:430000
P2RX7   430000 perm   171 sec   (2513 perm/sec)   p_kst 3.213953e-03   p_cons 1.330233e-03   p_joint 8.116279e-04

Joint ci ratio: 2.065174e-01	ci left: 7.337112e-04	ci right 9.047907e-04	k: 359	n:440000
Cons ci ratio: 1.622420e-01	ci left: 1.217496e-03	ci right 1.434611e-03	k: 582	n:440000
KS ci ratio: 1.040787e-01	ci left: 3.046332e-03	ci right 3.382989e-03	k: 1413	n:440000
P2RX7   440000 perm   177 sec   (2486 perm/sec)   p_kst 3.211364e-03   p_cons 1.322727e-03   p_joint 8.159091e-04

Joint ci ratio: 2.048181e-01	ci left: 7.300530e-04	ci right 8.987035e-04	k: 365	n:450000
Cons ci ratio: 1.603283e-01	ci left: 1.220296e-03	ci right 1.435096e-03	k: 596	n:450000
KS ci ratio: 1.030279e-01	ci left: 3.041411e-03	ci right 3.373925e-03	k: 1442	n:450000
P2RX7   450000 perm   183 sec   (2459 perm/sec)   p_kst 3.204444e-03   p_cons 1.324444e-03   p_joint 8.111111e-04

Joint ci ratio: 2.073877e-01	ci left: 6.956255e-04	ci right 8.585947e-04	k: 356	n:460000
Cons ci ratio: 1.588717e-01	ci left: 1.216726e-03	ci right 1.428766e-03	k: 607	n:460000
KS ci ratio: 1.019389e-01	ci left: 3.040957e-03	ci right 3.369697e-03	k: 1473	n:460000
P2RX7   460000 perm   189 sec   (2434 perm/sec)   p_kst 3.202174e-03   p_cons 1.319565e-03   p_joint 7.739130e-04

Joint ci ratio: 2.062363e-01	ci left: 6.888946e-04	ci right 8.492779e-04	k: 360	n:470000
Cons ci ratio: 1.574541e-01	ci left: 1.213316e-03	ci right 1.422697e-03	k: 618	n:470000
KS ci ratio: 1.008501e-01	ci left: 3.042615e-03	ci right 3.367813e-03	k: 1505	n:470000
P2RX7   470000 perm   195 sec   (2409 perm/sec)   p_kst 3.202128e-03   p_cons 1.314894e-03   p_joint 7.659574e-04

Joint ci ratio: 2.059527e-01	ci left: 6.765180e-04	ci right 8.337759e-04	k: 361	n:480000
Cons ci ratio: 1.561980e-01	ci left: 1.208054e-03	ci right 1.414708e-03	k: 628	n:480000
KS ci ratio: 9.966547e-02	ci left: 3.052347e-03	ci right 3.374529e-03	k: 1541	n:480000
P2RX7   480000 perm   201 sec   (2386 perm/sec)   p_kst 3.210417e-03   p_cons 1.308333e-03   p_joint 7.520833e-04

Joint ci ratio: 2.039900e-01	ci left: 6.762640e-04	ci right 8.317780e-04	k: 368	n:490000
Cons ci ratio: 1.543679e-01	ci left: 1.212823e-03	ci right 1.417637e-03	k: 643	n:490000
KS ci ratio: 9.877315e-02	ci left: 3.045778e-03	ci right 3.364222e-03	k: 1569	n:490000
P2RX7   490000 perm   207 sec   (2362 perm/sec)   p_kst 3.202041e-03   p_cons 1.312245e-03   p_joint 7.510204e-04

Joint ci ratio: 2.012803e-01	ci left: 6.817242e-04	ci right 8.361556e-04	k: 378	n:500000
Cons ci ratio: 1.531837e-01	ci left: 1.207796e-03	ci right 1.410053e-03	k: 653	n:500000
KS ci ratio: 9.775108e-02	ci left: 3.049241e-03	ci right 3.364559e-03	k: 1602	n:500000
P2RX7   500000 perm   214 sec   (2338 perm/sec)   p_kst 3.204000e-03   p_cons 1.306000e-03   p_joint 7.560000e-04

Joint ci ratio: 1.997061e-01	ci left: 6.795311e-04	ci right 8.321151e-04	k: 384	n:510000
Cons ci ratio: 1.516836e-01	ci left: 1.208632e-03	ci right 1.408867e-03	k: 666	n:510000
KS ci ratio: 9.687899e-02	ci left: 3.044931e-03	ci right 3.356834e-03	k: 1631	n:510000
P2RX7   510000 perm   220 sec   (2316 perm/sec)   p_kst 3.198039e-03   p_cons 1.305882e-03   p_joint 7.529412e-04

Joint ci ratio: 1.979151e-01	ci left: 6.792546e-04	ci right 8.302436e-04	k: 391	n:520000
Cons ci ratio: 1.507828e-01	ci left: 1.200191e-03	ci right 1.397740e-03	k: 674	n:520000
KS ci ratio: 9.602982e-02	ci left: 3.040798e-03	ci right 3.349394e-03	k: 1660	n:520000
P2RX7   520000 perm   227 sec   (2294 perm/sec)   p_kst 3.192308e-03   p_cons 1.296154e-03   p_joint 7.519231e-04

Joint ci ratio: 1.954375e-01	ci left: 6.843775e-04	ci right 8.343743e-04	k: 401	n:530000
Cons ci ratio: 1.492429e-01	ci left: 1.202970e-03	ci right 1.398773e-03	k: 688	n:530000
KS ci ratio: 9.520260e-02	ci left: 3.036832e-03	ci right 3.342223e-03	k: 1689	n:530000
P2RX7   530000 perm   233 sec   (2272 perm/sec)   p_kst 3.186792e-03   p_cons 1.298113e-03   p_joint 7.566038e-04

Joint ci ratio: 1.942338e-01	ci left: 6.805113e-04	ci right 8.286334e-04	k: 406	n:540000
Cons ci ratio: 1.485982e-01	ci left: 1.191389e-03	ci right 1.384396e-03	k: 694	n:540000
KS ci ratio: 9.453441e-02	ci left: 3.023984e-03	ci right 3.325830e-03	k: 1713	n:540000
P2RX7   540000 perm   240 sec   (2251 perm/sec)   p_kst 3.172222e-03   p_cons 1.285185e-03   p_joint 7.518519e-04

Joint ci ratio: 1.966680e-01	ci left: 6.508452e-04	ci right 7.944983e-04	k: 396	n:550000
Cons ci ratio: 1.466069e-01	ci left: 1.202998e-03	ci right 1.395045e-03	k: 713	n:550000
KS ci ratio: 9.382595e-02	ci left: 3.015161e-03	ci right 3.313747e-03	k: 1739	n:550000
P2RX7   550000 perm   247 sec   (2230 perm/sec)   p_kst 3.161818e-03   p_cons 1.296364e-03   p_joint 7.200000e-04

Joint ci ratio: 1.947157e-01	ci left: 6.528089e-04	ci right 7.952955e-04	k: 404	n:560000
Cons ci ratio: 1.453904e-01	ci left: 1.202161e-03	ci right 1.392344e-03	k: 725	n:560000
KS ci ratio: 9.302756e-02	ci left: 3.013638e-03	ci right 3.309396e-03	k: 1769	n:560000
P2RX7   560000 perm   253 sec   (2210 perm/sec)   p_kst 3.158929e-03   p_cons 1.294643e-03   p_joint 7.214286e-04

Joint ci ratio: 1.944769e-01	ci left: 6.430247e-04	ci right 7.831832e-04	k: 405	n:570000
Cons ci ratio: 1.442036e-01	ci left: 1.201361e-03	ci right 1.389732e-03	k: 737	n:570000
KS ci ratio: 9.217218e-02	ci left: 3.017322e-03	ci right 3.310571e-03	k: 1802	n:570000
P2RX7   570000 perm   260 sec   (2189 perm/sec)   p_kst 3.161404e-03   p_cons 1.292982e-03   p_joint 7.105263e-04

Joint ci ratio: 1.935264e-01	ci left: 6.384995e-04	ci right 7.769113e-04	k: 409	n:580000
Cons ci ratio: 1.431410e-01	ci left: 1.198931e-03	ci right 1.385418e-03	k: 748	n:580000
KS ci ratio: 9.156539e-02	ci left: 3.005727e-03	ci right 3.295823e-03	k: 1826	n:580000
P2RX7   580000 perm   267 sec   (2170 perm/sec)   p_kst 3.148276e-03   p_cons 1.289655e-03   p_joint 7.051724e-04

Joint ci ratio: 1.932918e-01	ci left: 6.292900e-04	ci right 7.655206e-04	k: 410	n:590000
Cons ci ratio: 1.421016e-01	ci left: 1.196589e-03	ci right 1.381245e-03	k: 759	n:590000
KS ci ratio: 9.089655e-02	ci left: 2.999500e-03	ci right 3.286769e-03	k: 1853	n:590000
P2RX7   590000 perm   274 sec   (2149 perm/sec)   p_kst 3.140678e-03   p_cons 1.286441e-03   p_joint 6.949153e-04

Joint ci ratio: 1.918963e-01	ci left: 6.283196e-04	ci right 7.632436e-04	k: 416	n:600000
Cons ci ratio: 1.406287e-01	ci left: 1.202370e-03	ci right 1.385833e-03	k: 775	n:600000
KS ci ratio: 9.005027e-02	ci left: 3.006523e-03	ci right 3.291641e-03	k: 1888	n:600000
P2RX7   600000 perm   282 sec   (2130 perm/sec)   p_kst 3.146667e-03   p_cons 1.291667e-03   p_joint 6.933333e-04

Joint ci ratio: 1.909830e-01	ci left: 6.242623e-04	ci right 7.576029e-04	k: 420	n:610000
Cons ci ratio: 1.392886e-01	ci left: 1.206388e-03	ci right 1.388565e-03	k: 790	n:610000
KS ci ratio: 8.946071e-02	ci left: 2.997298e-03	ci right 3.279584e-03	k: 1913	n:610000
P2RX7   610000 perm   289 sec   (2111 perm/sec)   p_kst 3.136066e-03   p_cons 1.295082e-03   p_joint 6.885246e-04

Joint ci ratio: 1.889735e-01	ci left: 6.280194e-04	ci right 7.605890e-04	k: 429	n:620000
Cons ci ratio: 1.377298e-01	ci left: 1.214957e-03	ci right 1.396206e-03	k: 808	n:620000
KS ci ratio: 8.867637e-02	ci left: 3.002573e-03	ci right 3.282747e-03	k: 1947	n:620000
P2RX7   620000 perm   296 sec   (2092 perm/sec)   p_kst 3.140323e-03   p_cons 1.303226e-03   p_joint 6.919355e-04

Joint ci ratio: 1.874538e-01	ci left: 6.286385e-04	ci right 7.601502e-04	k: 436	n:630000
Cons ci ratio: 1.363874e-01	ci left: 1.220198e-03	ci right 1.400311e-03	k: 824	n:630000
KS ci ratio: 8.827044e-02	ci left: 2.982851e-03	ci right 3.259845e-03	k: 1965	n:630000
P2RX7   630000 perm   304 sec   (2073 perm/sec)   p_kst 3.119048e-03   p_cons 1.307937e-03   p_joint 6.920635e-04

Joint ci ratio: 1.887560e-01	ci left: 6.098819e-04	ci right 7.384576e-04	k: 430	n:640000
Cons ci ratio: 1.354063e-01	ci left: 1.219245e-03	ci right 1.397818e-03	k: 836	n:640000
KS ci ratio: 8.760465e-02	ci left: 2.982088e-03	ci right 3.256816e-03	k: 1995	n:640000
P2RX7   640000 perm   311 sec   (2056 perm/sec)   p_kst 3.117188e-03   p_cons 1.306250e-03   p_joint 6.718750e-04

Joint ci ratio: 1.861812e-01	ci left: 6.180945e-04	ci right 7.464234e-04	k: 442	n:650000
Cons ci ratio: 1.342878e-01	ci left: 1.221299e-03	ci right 1.398578e-03	k: 850	n:650000
KS ci ratio: 8.684628e-02	ci left: 2.988881e-03	ci right 3.261731e-03	k: 2030	n:650000
P2RX7   650000 perm   319 sec   (2038 perm/sec)   p_kst 3.123077e-03   p_cons 1.307692e-03   p_joint 6.800000e-04

Joint ci ratio: 1.853467e-01	ci left: 6.145081e-04	ci right 7.414562e-04	k: 446	n:660000
Cons ci ratio: 1.327364e-01	ci left: 1.232086e-03	ci right 1.408701e-03	k: 870	n:660000
KS ci ratio: 8.631707e-02	ci left: 2.980653e-03	ci right 3.251010e-03	k: 2055	n:660000
P2RX7   660000 perm   327 sec   (2020 perm/sec)   p_kst 3.113636e-03   p_cons 1.318182e-03   p_joint 6.757576e-04

Joint ci ratio: 1.857640e-01	ci left: 6.024896e-04	ci right 7.272666e-04	k: 444	n:670000
Cons ci ratio: 1.315335e-01	ci left: 1.236788e-03	ci right 1.412345e-03	k: 886	n:670000
KS ci ratio: 8.573545e-02	ci left: 2.977058e-03	ci right 3.245177e-03	k: 2083	n:670000
P2RX7   670000 perm   334 sec   (2004 perm/sec)   p_kst 3.108955e-03   p_cons 1.322388e-03   p_joint 6.626866e-04

Joint ci ratio: 1.851414e-01	ci left: 5.978362e-04	ci right 7.211880e-04	k: 447	n:680000
Cons ci ratio: 1.307985e-01	ci left: 1.232823e-03	ci right 1.406764e-03	k: 896	n:680000
KS ci ratio: 8.512500e-02	ci left: 2.976453e-03	ci right 3.242514e-03	k: 2113	n:680000
P2RX7   680000 perm   342 sec   (1987 perm/sec)   p_kst 3.107353e-03   p_cons 1.317647e-03   p_joint 6.573529e-04

Joint ci ratio: 1.839140e-01	ci left: 5.974659e-04	ci right 7.198329e-04	k: 453	n:690000
Cons ci ratio: 1.296471e-01	ci left: 1.237389e-03	ci right 1.410319e-03	k: 912	n:690000
KS ci ratio: 8.435001e-02	ci left: 2.988640e-03	ci right 3.253240e-03	k: 2152	n:690000
P2RX7   690000 perm   350 sec   (1970 perm/sec)   p_kst 3.118841e-03   p_cons 1.321739e-03   p_joint 6.565217e-04

Joint ci ratio: 1.833099e-01	ci left: 5.930193e-04	ci right 7.140322e-04	k: 456	n:700000
Cons ci ratio: 1.291535e-01	ci left: 1.229388e-03	ci right 1.400496e-03	k: 919	n:700000
KS ci ratio: 8.374924e-02	ci left: 2.989300e-03	ci right 3.251981e-03	k: 2183	n:700000
P2RX7   700000 perm   358 sec   (1954 perm/sec)   p_kst 3.118571e-03   p_cons 1.312857e-03   p_joint 6.514286e-04

Joint ci ratio: 1.817260e-01	ci left: 5.954198e-04	ci right 7.157572e-04	k: 464	n:710000
Cons ci ratio: 1.283195e-01	ci left: 1.228430e-03	ci right 1.398216e-03	k: 931	n:710000
KS ci ratio: 8.329326e-02	ci left: 2.980294e-03	ci right 3.240688e-03	k: 2207	n:710000
P2RX7   710000 perm   366 sec   (1938 perm/sec)   p_kst 3.108451e-03   p_cons 1.311268e-03   p_joint 6.535211e-04

Joint ci ratio: 1.798025e-01	ci left: 6.004107e-04	ci right 7.203326e-04	k: 474	n:720000
Cons ci ratio: 1.273663e-01	ci left: 1.230191e-03	ci right 1.398862e-03	k: 945	n:720000
KS ci ratio: 8.265911e-02	ci left: 2.985143e-03	ci right 3.243880e-03	k: 2241	n:720000
P2RX7   720000 perm   375 sec   (1922 perm/sec)   p_kst 3.112500e-03   p_cons 1.312500e-03   p_joint 6.583333e-04

Joint ci ratio: 1.827132e-01	ci left: 5.725694e-04	ci right 6.889868e-04	k: 459	n:730000
Cons ci ratio: 1.265001e-01	ci left: 1.230582e-03	ci right 1.398073e-03	k: 958	n:730000
KS ci ratio: 8.225704e-02	ci left: 2.973766e-03	ci right 3.230202e-03	k: 2263	n:730000
P2RX7   730000 perm   383 sec   (1906 perm/sec)   p_kst 3.100000e-03   p_cons 1.312329e-03   p_joint 6.287671e-04

Joint ci ratio: 1.813386e-01	ci left: 5.738605e-04	ci right 6.895662e-04	k: 466	n:740000
Cons ci ratio: 1.257810e-01	ci left: 1.228348e-03	ci right 1.394514e-03	k: 969	n:740000
KS ci ratio: 8.164609e-02	ci left: 2.978585e-03	ci right 3.233438e-03	k: 2297	n:740000
P2RX7   740000 perm   391 sec   (1891 perm/sec)   p_kst 3.104054e-03   p_cons 1.309459e-03   p_joint 6.297297e-04

Joint ci ratio: 1.821215e-01	ci left: 5.611179e-04	ci right 6.747967e-04	k: 462	n:750000
Cons ci ratio: 1.249465e-01	ci left: 1.228760e-03	ci right 1.393797e-03	k: 982	n:750000
KS ci ratio: 8.113585e-02	ci left: 2.976750e-03	ci right 3.229779e-03	k: 2326	n:750000
P2RX7   750000 perm   400 sec   (1876 perm/sec)   p_kst 3.101333e-03   p_cons 1.309333e-03   p_joint 6.160000e-04

Joint ci ratio: 1.803765e-01	ci left: 5.650397e-04	ci right 6.782965e-04	k: 471	n:760000
Cons ci ratio: 1.241285e-01	ci left: 1.229164e-03	ci right 1.393096e-03	k: 995	n:760000
KS ci ratio: 8.058362e-02	ci left: 2.978836e-03	ci right 3.230238e-03	k: 2358	n:760000
P2RX7   760000 perm   409 sec   (1860 perm/sec)   p_kst 3.102632e-03   p_cons 1.309211e-03   p_joint 6.197368e-04

Joint ci ratio: 1.857720e-01	ci left: 5.242422e-04	ci right 6.328190e-04	k: 444	n:770000
Cons ci ratio: 1.231431e-01	ci left: 1.233338e-03	ci right 1.396425e-03	k: 1011	n:770000
KS ci ratio: 8.005930e-02	ci left: 2.979601e-03	ci right 3.229355e-03	k: 2389	n:770000
P2RX7   770000 perm   417 sec   (1845 perm/sec)   p_kst 3.102597e-03   p_cons 1.312987e-03   p_joint 5.766234e-04

Joint ci ratio: 1.870386e-01	ci left: 5.101874e-04	ci right 6.166556e-04	k: 438	n:780000
Cons ci ratio: 1.223597e-01	ci left: 1.233681e-03	ci right 1.395700e-03	k: 1024	n:780000
KS ci ratio: 7.949569e-02	ci left: 2.984121e-03	ci right 3.232412e-03	k: 2423	n:780000
P2RX7   780000 perm   426 sec   (1830 perm/sec)   p_kst 3.106410e-03   p_cons 1.312821e-03   p_joint 5.615385e-04

Joint ci ratio: 1.949773e-01	ci left: 4.615420e-04	ci right 5.624324e-04	k: 403	n:790000
Cons ci ratio: 1.215324e-01	ci left: 1.235246e-03	ci right 1.396295e-03	k: 1038	n:790000
KS ci ratio: 7.891163e-02	ci left: 2.991015e-03	ci right 3.237967e-03	k: 2459	n:790000
P2RX7   790000 perm   435 sec   (1817 perm/sec)   p_kst 3.112658e-03   p_cons 1.313924e-03   p_joint 5.101266e-04

Joint ci ratio: 1.999935e-01	ci left: 4.320080e-04	ci right 5.291685e-04	k: 383	n:800000
Cons ci ratio: 1.204928e-01	ci left: 1.241624e-03	ci right 1.402021e-03	k: 1056	n:800000
KS ci ratio: 7.845068e-02	ci left: 2.989164e-03	ci right 3.234456e-03	k: 2488	n:800000
P2RX7   800000 perm   444 sec   (1803 perm/sec)   p_kst 3.110000e-03   p_cons 1.320000e-03   p_joint 4.787500e-04

Joint ci ratio: 1.987040e-01	ci left: 4.325393e-04	ci right 5.291161e-04	k: 388	n:810000
Cons ci ratio: 1.199271e-01	ci left: 1.238270e-03	ci right 1.397429e-03	k: 1066	n:810000
KS ci ratio: 7.785826e-02	ci left: 2.998258e-03	ci right 3.242354e-03	k: 2526	n:810000
P2RX7   810000 perm   453 sec   (1789 perm/sec)   p_kst 3.118519e-03   p_cons 1.316049e-03   p_joint 4.790123e-04

Joint ci ratio: 2.059850e-01	ci left: 3.960045e-04	ci right 4.880722e-04	k: 361	n:820000
Cons ci ratio: 1.193693e-01	ci left: 1.234999e-03	ci right 1.392948e-03	k: 1076	n:820000
KS ci ratio: 7.741542e-02	ci left: 2.996373e-03	ci right 3.238865e-03	k: 2555	n:820000
P2RX7   820000 perm   462 sec   (1775 perm/sec)   p_kst 3.115854e-03   p_cons 1.312195e-03   p_joint 4.402439e-04

Joint ci ratio: 2.048564e-01	ci left: 3.958047e-04	ci right 4.872587e-04	k: 365	n:830000
Cons ci ratio: 1.188739e-01	ci left: 1.230640e-03	ci right 1.387332e-03	k: 1085	n:830000
KS ci ratio: 7.695019e-02	ci left: 2.996901e-03	ci right 3.237913e-03	k: 2586	n:830000
P2RX7   830000 perm   471 sec   (1762 perm/sec)   p_kst 3.115663e-03   p_cons 1.307229e-03   p_joint 4.397590e-04

Joint ci ratio: 2.023826e-01	ci left: 4.012609e-04	ci right 4.927176e-04	k: 374	n:840000
Cons ci ratio: 1.181150e-01	ci left: 1.232162e-03	ci right 1.387976e-03	k: 1099	n:840000
KS ci ratio: 7.639088e-02	ci left: 3.005595e-03	ci right 3.245471e-03	k: 2624	n:840000
P2RX7   840000 perm   480 sec   (1748 perm/sec)   p_kst 3.123810e-03   p_cons 1.308333e-03   p_joint 4.452381e-04

Joint ci ratio: 2.015781e-01	ci left: 3.998911e-04	ci right 4.906287e-04	k: 377	n:850000
Cons ci ratio: 1.175819e-01	ci left: 1.229084e-03	ci right 1.383759e-03	k: 1109	n:850000
KS ci ratio: 7.597248e-02	ci left: 3.003702e-03	ci right 3.242057e-03	k: 2653	n:850000
P2RX7   850000 perm   490 sec   (1735 perm/sec)   p_kst 3.121176e-03   p_cons 1.304706e-03   p_joint 4.435294e-04

Joint ci ratio: 2.444862e-01	ci left: 2.623280e-04	ci right 3.364548e-04	k: 256	n:860000
Cons ci ratio: 1.101339e-01	ci left: 1.389903e-03	ci right 1.553019e-03	k: 1264	n:860000
KS ci ratio: 7.556087e-02	ci left: 3.001857e-03	ci right 3.238718e-03	k: 2682	n:860000
P2RX7   860000 perm   499 sec   (1722 perm/sec)   p_kst 3.118605e-03   p_cons 1.469767e-03   p_joint 2.976744e-04

Joint ci ratio: 1.576294e-01	ci left: 6.543503e-04	ci right 7.674076e-04	k: 617	n:870000
Cons ci ratio: 1.092731e-01	ci left: 1.396285e-03	ci right 1.558787e-03	k: 1284	n:870000
KS ci ratio: 7.512811e-02	ci left: 3.002314e-03	ci right 3.237795e-03	k: 2713	n:870000
P2RX7   870000 perm   509 sec   (1710 perm/sec)   p_kst 3.118391e-03   p_cons 1.475862e-03   p_joint 7.091954e-04

Joint ci ratio: 1.568699e-01	ci left: 6.534644e-04	ci right 7.657734e-04	k: 623	n:880000
Cons ci ratio: 1.087246e-01	ci left: 1.394788e-03	ci right 1.556249e-03	k: 1297	n:880000
KS ci ratio: 7.463453e-02	ci left: 3.008340e-03	ci right 3.242676e-03	k: 2749	n:880000
P2RX7   880000 perm   518 sec   (1698 perm/sec)   p_kst 3.123864e-03   p_cons 1.473864e-03   p_joint 7.079545e-04

Joint ci ratio: 1.702231e-01	ci left: 5.448169e-04	ci right 6.472428e-04	k: 529	n:890000
Cons ci ratio: 1.081843e-01	ci left: 1.393327e-03	ci right 1.553766e-03	k: 1310	n:890000
KS ci ratio: 7.028252e-02	ci left: 3.360699e-03	ci right 3.606595e-03	k: 3099	n:890000
P2RX7   890000 perm   528 sec   (1685 perm/sec)   p_kst 3.482022e-03   p_cons 1.471910e-03   p_joint 5.943820e-04

Joint ci ratio: 1.691099e-01	ci left: 5.462110e-04	ci right 6.481589e-04	k: 536	n:900000
Cons ci ratio: 1.076520e-01	ci left: 1.391900e-03	ci right 1.551336e-03	k: 1323	n:900000
KS ci ratio: 6.988908e-02	ci left: 3.361565e-03	ci right 3.606092e-03	k: 3134	n:900000
P2RX7   900000 perm   538 sec   (1673 perm/sec)   p_kst 3.482222e-03   p_cons 1.470000e-03   p_joint 5.955556e-04

Joint ci ratio: 1.683282e-01	ci left: 5.454711e-04	ci right 6.467626e-04	k: 541	n:910000
Cons ci ratio: 1.070473e-01	ci left: 1.392646e-03	ci right 1.551214e-03	k: 1338	n:910000
KS ci ratio: 6.956828e-02	ci left: 3.355937e-03	ci right 3.598889e-03	k: 3163	n:910000
P2RX7   910000 perm   548 sec   (1662 perm/sec)   p_kst 3.475824e-03   p_cons 1.470330e-03   p_joint 5.945055e-04

Joint ci ratio: 1.670993e-01	ci left: 5.478728e-04	ci right 6.487928e-04	k: 549	n:920000
Cons ci ratio: 1.062173e-01	ci left: 1.399726e-03	ci right 1.557788e-03	k: 1359	n:920000
KS ci ratio: 6.915412e-02	ci left: 3.360048e-03	ci right 3.601791e-03	k: 3201	n:920000
P2RX7   920000 perm   557 sec   (1650 perm/sec)   p_kst 3.479348e-03   p_cons 1.477174e-03   p_joint 5.967391e-04

Joint ci ratio: 1.667967e-01	ci left: 5.440423e-04	ci right 6.440570e-04	k: 551	n:930000
Cons ci ratio: 1.057519e-01	ci left: 1.397236e-03	ci right 1.554282e-03	k: 1371	n:930000
KS ci ratio: 6.866226e-02	ci left: 3.372529e-03	ci right 3.613376e-03	k: 3247	n:930000
P2RX7   930000 perm   568 sec   (1639 perm/sec)   p_kst 3.491398e-03   p_cons 1.474194e-03   p_joint 5.924731e-04

Joint ci ratio: 1.656008e-01	ci left: 5.464113e-04	ci right 6.460695e-04	k: 559	n:940000
Cons ci ratio: 1.051405e-01	ci left: 1.398944e-03	ci right 1.555217e-03	k: 1387	n:940000
KS ci ratio: 6.823274e-02	ci left: 3.379522e-03	ci right 3.619298e-03	k: 3288	n:940000
P2RX7   940000 perm   578 sec   (1628 perm/sec)   p_kst 3.497872e-03   p_cons 1.475532e-03   p_joint 5.946809e-04

Joint ci ratio: 1.637109e-01	ci left: 5.537801e-04	ci right 6.535162e-04	k: 572	n:950000
Cons ci ratio: 1.045024e-01	ci left: 1.401644e-03	ci right 1.557210e-03	k: 1404	n:950000
KS ci ratio: 6.780095e-02	ci left: 3.387407e-03	ci right 3.626162e-03	k: 3330	n:950000
P2RX7   950000 perm   588 sec   (1617 perm/sec)   p_kst 3.505263e-03   p_cons 1.477895e-03   p_joint 6.021053e-04

Joint ci ratio: 1.628604e-01	ci left: 5.540062e-04	ci right 6.532139e-04	k: 578	n:960000
Cons ci ratio: 1.039123e-01	ci left: 1.403276e-03	ci right 1.558090e-03	k: 1420	n:960000
KS ci ratio: 6.743748e-02	ci left: 3.388987e-03	ci right 3.626524e-03	k: 3366	n:960000
P2RX7   960000 perm   598 sec   (1606 perm/sec)   p_kst 3.506250e-03   p_cons 1.479167e-03   p_joint 6.020833e-04

Joint ci ratio: 1.617467e-01	ci left: 5.562073e-04	ci right 6.550618e-04	k: 586	n:970000
Cons ci ratio: 1.034765e-01	ci left: 1.400860e-03	ci right 1.554719e-03	k: 1432	n:970000
KS ci ratio: 6.704027e-02	ci left: 3.394594e-03	ci right 3.631067e-03	k: 3406	n:970000
P2RX7   970000 perm   608 sec   (1596 perm/sec)   p_kst 3.511340e-03   p_cons 1.476289e-03   p_joint 6.041237e-04

Joint ci ratio: 1.611985e-01	ci left: 5.544484e-04	ci right 6.526239e-04	k: 590	n:980000
Cons ci ratio: 1.028680e-01	ci left: 1.403464e-03	ci right 1.556649e-03	k: 1449	n:980000
KS ci ratio: 6.661121e-02	ci left: 3.404103e-03	ci right 3.639663e-03	k: 3450	n:980000
P2RX7   980000 perm   618 sec   (1585 perm/sec)   p_kst 3.520408e-03   p_cons 1.478571e-03   p_joint 6.020408e-04

Joint ci ratio: 1.607912e-01	ci left: 5.517560e-04	ci right 6.491842e-04	k: 593	n:990000
Cons ci ratio: 1.023400e-01	ci left: 1.404051e-03	ci right 1.556466e-03	k: 1464	n:990000
KS ci ratio: 6.621882e-02	ci left: 3.410445e-03	ci right 3.645000e-03	k: 3491	n:990000
P2RX7   990000 perm   628 sec   (1575 perm/sec)   p_kst 3.526263e-03   p_cons 1.478788e-03   p_joint 5.989899e-04

Joint ci ratio: 1.589286e-01	ci left: 5.596786e-04	ci right 6.572517e-04	k: 607	n:1000000
Cons ci ratio: 1.016483e-01	ci left: 1.409500e-03	ci right 1.561411e-03	k: 1484	n:1000000
KS ci ratio: 6.582393e-02	ci left: 3.417648e-03	ci right 3.651243e-03	k: 3533	n:1000000
P2RX7   1000000 perm   639 sec   (1565 perm/sec)   p_kst 3.533000e-03   p_cons 1.484000e-03   p_joint 6.070000e-04

Joint ci ratio: 1.577650e-01	ci left: 5.626951e-04	ci right 6.600078e-04	k: 616	n:1010000
Cons ci ratio: 1.012402e-01	ci left: 1.407124e-03	ci right 1.558134e-03	k: 1496	n:1010000
KS ci ratio: 6.543602e-02	ci left: 3.424712e-03	ci right 3.657358e-03	k: 3575	n:1010000
P2RX7   1010000 perm   650 sec   (1555 perm/sec)   p_kst 3.539604e-03   p_cons 1.481188e-03   p_joint 6.099010e-04

Joint ci ratio: 1.573831e-01	ci left: 5.600037e-04	ci right 6.565943e-04	k: 619	n:1020000
Cons ci ratio: 1.009039e-01	ci left: 1.402885e-03	ci right 1.552910e-03	k: 1506	n:1020000
KS ci ratio: 6.510910e-02	ci left: 3.425854e-03	ci right 3.657371e-03	k: 3611	n:1020000
P2RX7   1020000 perm   660 sec   (1545 perm/sec)   p_kst 3.540196e-03   p_cons 1.476471e-03   p_joint 6.068627e-04

Joint ci ratio: 1.572567e-01	ci left: 5.554993e-04	ci right 6.512288e-04	k: 620	n:1030000
Cons ci ratio: 1.006708e-01	ci left: 1.395889e-03	ci right 1.544801e-03	k: 1513	n:1030000
KS ci ratio: 6.480485e-02	ci left: 3.425067e-03	ci right 3.655409e-03	k: 3645	n:1030000
P2RX7   1030000 perm   671 sec   (1535 perm/sec)   p_kst 3.538835e-03   p_cons 1.468932e-03   p_joint 6.019417e-04

Joint ci ratio: 1.562533e-01	ci left: 5.575486e-04	ci right 6.529607e-04	k: 628	n:1040000
Cons ci ratio: 1.002414e-01	ci left: 1.394653e-03	ci right 1.542761e-03	k: 1526	n:1040000
KS ci ratio: 6.448724e-02	ci left: 3.426189e-03	ci right 3.655435e-03	k: 3681	n:1040000
P2RX7   1040000 perm   682 sec   (1526 perm/sec)   p_kst 3.539423e-03   p_cons 1.467308e-03   p_joint 6.038462e-04

Joint ci ratio: 1.557590e-01	ci left: 5.558993e-04	ci right 6.507002e-04	k: 632	n:1050000
Cons ci ratio: 9.981752e-02	ci left: 1.393442e-03	ci right 1.540759e-03	k: 1539	n:1050000
KS ci ratio: 6.416560e-02	ci left: 3.428231e-03	ci right 3.656426e-03	k: 3718	n:1050000
P2RX7   1050000 perm   693 sec   (1516 perm/sec)   p_kst 3.540952e-03   p_cons 1.465714e-03   p_joint 6.019048e-04

Joint ci ratio: 1.550260e-01	ci left: 5.560953e-04	ci right 6.504418e-04	k: 638	n:1060000
Cons ci ratio: 9.943101e-02	ci left: 1.391335e-03	ci right 1.537826e-03	k: 1551	n:1060000
KS ci ratio: 6.387434e-02	ci left: 3.427451e-03	ci right 3.654521e-03	k: 3752	n:1060000
P2RX7   1060000 perm   703 sec   (1507 perm/sec)   p_kst 3.539623e-03   p_cons 1.463208e-03   p_joint 6.018868e-04

Joint ci ratio: 1.336171e-01	ci left: 7.500278e-04	ci right 8.583113e-04	k: 859	n:1070000
Cons ci ratio: 9.898558e-02	ci left: 1.391091e-03	ci right 1.536862e-03	k: 1565	n:1070000
KS ci ratio: 6.353650e-02	ci left: 3.432206e-03	ci right 3.658345e-03	k: 3792	n:1070000
P2RX7   1070000 perm   715 sec   (1497 perm/sec)   p_kst 3.543925e-03   p_cons 1.462617e-03   p_joint 8.028037e-04

Joint ci ratio: 1.324664e-01	ci left: 7.565099e-04	ci right 8.647147e-04	k: 874	n:1080000
Cons ci ratio: 9.842141e-02	ci left: 1.394466e-03	ci right 1.539710e-03	k: 1583	n:1080000
KS ci ratio: 6.323710e-02	ci left: 3.433232e-03	ci right 3.658333e-03	k: 3828	n:1080000
P2RX7   1080000 perm   726 sec   (1487 perm/sec)   p_kst 3.544444e-03   p_cons 1.465741e-03   p_joint 8.092593e-04

Joint ci ratio: 1.320147e-01	ci left: 7.548919e-04	ci right 8.624682e-04	k: 880	n:1090000
Cons ci ratio: 9.811241e-02	ci left: 1.390622e-03	ci right 1.534984e-03	k: 1593	n:1090000
KS ci ratio: 6.294189e-02	ci left: 3.434241e-03	ci right 3.658318e-03	k: 3864	n:1090000
P2RX7   1090000 perm   738 sec   (1477 perm/sec)   p_kst 3.544954e-03   p_cons 1.461468e-03   p_joint 8.073394e-04

Joint ci ratio: 1.316419e-01	ci left: 7.524247e-04	ci right 8.593229e-04	k: 885	n:1100000
Cons ci ratio: 9.777578e-02	ci left: 1.387735e-03	ci right 1.531275e-03	k: 1604	n:1100000
KS ci ratio: 6.263466e-02	ci left: 3.437024e-03	ci right 3.660148e-03	k: 3902	n:1100000
P2RX7   1100000 perm   749 sec   (1468 perm/sec)   p_kst 3.547273e-03   p_cons 1.458182e-03   p_joint 8.045455e-04

Joint ci ratio: 1.307591e-01	ci left: 7.561022e-04	ci right 8.627466e-04	k: 897	n:1110000
Cons ci ratio: 9.714205e-02	ci left: 1.393690e-03	ci right 1.536859e-03	k: 1625	n:1110000
KS ci ratio: 6.237161e-02	ci left: 3.435324e-03	ci right 3.657369e-03	k: 3935	n:1110000
P2RX7   1110000 perm   761 sec   (1458 perm/sec)   p_kst 3.545045e-03   p_cons 1.463964e-03   p_joint 8.081081e-04

Joint ci ratio: 1.301805e-01	ci left: 7.562610e-04	ci right 8.624194e-04	k: 905	n:1120000
Cons ci ratio: 9.660865e-02	ci left: 1.396929e-03	ci right 1.539598e-03	k: 1643	n:1120000
KS ci ratio: 6.213542e-02	ci left: 3.431020e-03	ci right 3.651916e-03	k: 3965	n:1120000
P2RX7   1120000 perm   773 sec   (1449 perm/sec)   p_kst 3.540179e-03   p_cons 1.466964e-03   p_joint 8.080357e-04

Joint ci ratio: 1.299658e-01	ci left: 7.521368e-04	ci right 8.575287e-04	k: 908	n:1130000
Cons ci ratio: 9.637473e-02	ci left: 1.391475e-03	ci right 1.533224e-03	k: 1651	n:1130000
KS ci ratio: 6.194079e-02	ci left: 3.422438e-03	ci right 3.642066e-03	k: 3990	n:1130000
P2RX7   1130000 perm   785 sec   (1439 perm/sec)   p_kst 3.530973e-03   p_cons 1.461062e-03   p_joint 8.035398e-04

Joint ci ratio: 1.296100e-01	ci left: 7.497826e-04	ci right 8.545348e-04	k: 913	n:1140000
Cons ci ratio: 9.588255e-02	ci left: 1.393823e-03	ci right 1.535045e-03	k: 1668	n:1140000
KS ci ratio: 6.169404e-02	ci left: 3.420052e-03	ci right 3.638622e-03	k: 4022	n:1140000
P2RX7   1140000 perm   797 sec   (1431 perm/sec)   p_kst 3.528070e-03   p_cons 1.463158e-03   p_joint 8.008772e-04

Joint ci ratio: 1.293276e-01	ci left: 7.466283e-04	ci right 8.506951e-04	k: 917	n:1150000
Cons ci ratio: 9.525648e-02	ci left: 1.400377e-03	ci right 1.541284e-03	k: 1690	n:1150000
KS ci ratio: 6.143501e-02	ci left: 3.419423e-03	ci right 3.637002e-03	k: 4056	n:1150000
P2RX7   1150000 perm   809 sec   (1422 perm/sec)   p_kst 3.526957e-03   p_cons 1.469565e-03   p_joint 7.973913e-04

Joint ci ratio: 1.288374e-01	ci left: 7.460315e-04	ci right 8.495907e-04	k: 924	n:1160000
Cons ci ratio: 9.475338e-02	ci left: 1.403453e-03	ci right 1.543883e-03	k: 1708	n:1160000
KS ci ratio: 6.120175e-02	ci left: 3.416259e-03	ci right 3.632783e-03	k: 4087	n:1160000
P2RX7   1160000 perm   821 sec   (1414 perm/sec)   p_kst 3.523276e-03   p_cons 1.472414e-03   p_joint 7.965517e-04

Joint ci ratio: 1.289774e-01	ci left: 7.380006e-04	ci right 8.405650e-04	k: 922	n:1170000
Cons ci ratio: 9.442257e-02	ci left: 1.401471e-03	ci right 1.541186e-03	k: 1720	n:1170000
KS ci ratio: 6.099341e-02	ci left: 3.410626e-03	ci right 3.626031e-03	k: 4115	n:1170000
P2RX7   1170000 perm   833 sec   (1405 perm/sec)   p_kst 3.517094e-03   p_cons 1.470085e-03   p_joint 7.880342e-04

Joint ci ratio: 1.313491e-01	ci left: 7.046901e-04	ci right 8.045664e-04	k: 889	n:1180000
Cons ci ratio: 9.390546e-02	ci left: 1.405317e-03	ci right 1.544606e-03	k: 1739	n:1180000
KS ci ratio: 6.073573e-02	ci left: 3.410932e-03	ci right 3.625414e-03	k: 4150	n:1180000
P2RX7   1180000 perm   845 sec   (1397 perm/sec)   p_kst 3.516949e-03   p_cons 1.473729e-03   p_joint 7.533898e-04

Joint ci ratio: 1.303999e-01	ci left: 7.093351e-04	ci right 8.090870e-04	k: 902	n:1190000
Cons ci ratio: 9.337017e-02	ci left: 1.409921e-03	ci right 1.548826e-03	k: 1759	n:1190000
KS ci ratio: 6.048129e-02	ci left: 3.411235e-03	ci right 3.624806e-03	k: 4185	n:1190000
P2RX7   1190000 perm   857 sec   (1389 perm/sec)   p_kst 3.516807e-03   p_cons 1.478151e-03   p_joint 7.579832e-04

Joint ci ratio: 1.261385e-01	ci left: 7.534343e-04	ci right 8.556666e-04	k: 964	n:1200000
Cons ci ratio: 9.313258e-02	ci left: 1.405497e-03	ci right 1.543594e-03	k: 1768	n:1200000
KS ci ratio: 6.192384e-02	ci left: 3.225247e-03	ci right 3.432162e-03	k: 3993	n:1200000
P2RX7   1200000 perm   869 sec   (1381 perm/sec)   p_kst 3.327500e-03   p_cons 1.473333e-03   p_joint 8.033333e-04

Joint ci ratio: 1.258781e-01	ci left: 7.504091e-04	ci right 8.520050e-04	k: 968	n:1210000
Cons ci ratio: 9.271419e-02	ci left: 1.406797e-03	ci right 1.544367e-03	k: 1784	n:1210000
KS ci ratio: 6.170036e-02	ci left: 3.222188e-03	ci right 3.428134e-03	k: 4022	n:1210000
P2RX7   1210000 perm   881 sec   (1373 perm/sec)   p_kst 3.323967e-03   p_cons 1.474380e-03   p_joint 8.000000e-04

Joint ci ratio: 1.254902e-01	ci left: 7.490216e-04	ci right 8.500939e-04	k: 974	n:1220000
Cons ci ratio: 9.230139e-02	ci left: 1.408077e-03	ci right 1.545127e-03	k: 1800	n:1220000
KS ci ratio: 6.150213e-02	ci left: 3.216760e-03	ci right 3.421675e-03	k: 4048	n:1220000
P2RX7   1220000 perm   894 sec   (1365 perm/sec)   p_kst 3.318033e-03   p_cons 1.475410e-03   p_joint 7.983607e-04

Joint ci ratio: 1.250422e-01	ci left: 7.484447e-04	ci right 8.490519e-04	k: 981	n:1230000
Cons ci ratio: 9.191939e-02	ci left: 1.408544e-03	ci right 1.545041e-03	k: 1815	n:1230000
KS ci ratio: 6.129824e-02	ci left: 3.212221e-03	ci right 3.416145e-03	k: 4075	n:1230000
P2RX7   1230000 perm   906 sec   (1358 perm/sec)   p_kst 3.313008e-03   p_cons 1.475610e-03   p_joint 7.975610e-04

Joint ci ratio: 1.258143e-01	ci left: 7.330347e-04	ci right 8.322243e-04	k: 969	n:1240000
Cons ci ratio: 9.144212e-02	ci left: 1.412156e-03	ci right 1.548254e-03	k: 1834	n:1240000
KS ci ratio: 6.108144e-02	ci left: 3.209345e-03	ci right 3.412340e-03	k: 4104	n:1240000
P2RX7   1240000 perm   918 sec   (1350 perm/sec)   p_kst 3.309677e-03   p_cons 1.479032e-03   p_joint 7.814516e-04

Joint ci ratio: 1.268662e-01	ci left: 7.147745e-04	ci right 8.123627e-04	k: 953	n:1250000
Cons ci ratio: 9.094764e-02	ci left: 1.416494e-03	ci right 1.552233e-03	k: 1854	n:1250000
KS ci ratio: 6.083002e-02	ci left: 3.210456e-03	ci right 3.412656e-03	k: 4138	n:1250000
P2RX7   1250000 perm   931 sec   (1343 perm/sec)   p_kst 3.310400e-03   p_cons 1.483200e-03   p_joint 7.624000e-04

Joint ci ratio: 1.263376e-01	ci left: 7.152498e-04	ci right 8.124655e-04	k: 961	n:1260000
Cons ci ratio: 9.055789e-02	ci left: 1.417662e-03	ci right 1.552900e-03	k: 1870	n:1260000
KS ci ratio: 6.059625e-02	ci left: 3.209987e-03	ci right 3.411354e-03	k: 4170	n:1260000
P2RX7   1260000 perm   944 sec   (1335 perm/sec)   p_kst 3.309524e-03   p_cons 1.484127e-03   p_joint 7.626984e-04

Joint ci ratio: 1.260759e-01	ci left: 7.126680e-04	ci right 8.093172e-04	k: 965	n:1270000
Cons ci ratio: 9.019705e-02	ci left: 1.418043e-03	ci right 1.552750e-03	k: 1885	n:1270000
KS ci ratio: 6.032917e-02	ci left: 3.213406e-03	ci right 3.414067e-03	k: 4207	n:1270000
P2RX7   1270000 perm   957 sec   (1327 perm/sec)   p_kst 3.312598e-03   p_cons 1.484252e-03   p_joint 7.598425e-04

Joint ci ratio: 1.254282e-01	ci left: 7.146671e-04	ci right 8.110525e-04	k: 975	n:1280000
Cons ci ratio: 8.979320e-02	ci left: 1.419947e-03	ci right 1.554200e-03	k: 1902	n:1280000
KS ci ratio: 6.010111e-02	ci left: 3.212924e-03	ci right 3.412771e-03	k: 4239	n:1280000
P2RX7   1280000 perm   970 sec   (1320 perm/sec)   p_kst 3.311719e-03   p_cons 1.485938e-03   p_joint 7.617188e-04

Joint ci ratio: 1.251722e-01	ci left: 7.121306e-04	ci right 8.079633e-04	k: 979	n:1290000
Cons ci ratio: 8.953493e-02	ci left: 1.417276e-03	ci right 1.550870e-03	k: 1913	n:1290000
KS ci ratio: 5.986858e-02	ci left: 3.213216e-03	ci right 3.412280e-03	k: 4272	n:1290000
P2RX7   1290000 perm   983 sec   (1313 perm/sec)   p_kst 3.311628e-03   p_cons 1.482946e-03   p_joint 7.589147e-04

Joint ci ratio: 1.246013e-01	ci left: 7.133595e-04	ci right 8.088874e-04	k: 988	n:1300000
Cons ci ratio: 8.909367e-02	ci left: 1.420663e-03	ci right 1.553882e-03	k: 1932	n:1300000
KS ci ratio: 5.962485e-02	ci left: 3.215020e-03	ci right 3.413357e-03	k: 4307	n:1300000
P2RX7   1300000 perm   996 sec   (1306 perm/sec)   p_kst 3.313077e-03   p_cons 1.486154e-03   p_joint 7.600000e-04

Joint ci ratio: 1.242876e-01	ci left: 7.116119e-04	ci right 8.066482e-04	k: 993	n:1310000
Cons ci ratio: 8.874998e-02	ci left: 1.421014e-03	ci right 1.553725e-03	k: 1947	n:1310000
KS ci ratio: 5.941839e-02	ci left: 3.213037e-03	ci right 3.410543e-03	k: 4337	n:1310000
P2RX7   1310000 perm   1009 sec   (1299 perm/sec)   p_kst 3.310687e-03   p_cons 1.486260e-03   p_joint 7.580153e-04

Joint ci ratio: 1.236054e-01	ci left: 7.142960e-04	ci right 8.091288e-04	k: 1004	n:1320000
Cons ci ratio: 8.834266e-02	ci left: 1.423583e-03	ci right 1.555893e-03	k: 1965	n:1320000
KS ci ratio: 5.915973e-02	ci left: 3.217057e-03	ci right 3.413920e-03	k: 4375	n:1320000
P2RX7   1320000 perm   1022 sec   (1292 perm/sec)   p_kst 3.314394e-03   p_cons 1.488636e-03   p_joint 7.606061e-04

Joint ci ratio: 1.244137e-01	ci left: 6.994537e-04	ci right 7.929680e-04	k: 991	n:1330000
Cons ci ratio: 8.783013e-02	ci left: 1.429792e-03	ci right 1.561868e-03	k: 1988	n:1330000
KS ci ratio: 5.895805e-02	ci left: 3.215092e-03	ci right 3.411141e-03	k: 4405	n:1330000
P2RX7   1330000 perm   1035 sec   (1285 perm/sec)   p_kst 3.312030e-03   p_cons 1.494737e-03   p_joint 7.451128e-04

Joint ci ratio: 1.248556e-01	ci left: 6.891727e-04	ci right 7.816640e-04	k: 984	n:1340000
Cons ci ratio: 8.761033e-02	ci left: 1.426421e-03	ci right 1.557839e-03	k: 1998	n:1340000
KS ci ratio: 5.875842e-02	ci left: 3.213158e-03	ci right 3.408402e-03	k: 4435	n:1340000
P2RX7   1340000 perm   1048 sec   (1278 perm/sec)   p_kst 3.309701e-03   p_cons 1.491045e-03   p_joint 7.343284e-04

Joint ci ratio: 1.244143e-01	ci left: 6.890912e-04	ci right 7.812206e-04	k: 991	n:1350000
Cons ci ratio: 8.721843e-02	ci left: 1.428897e-03	ci right 1.559924e-03	k: 2016	n:1350000
KS ci ratio: 5.850825e-02	ci left: 3.217092e-03	ci right 3.411715e-03	k: 4473	n:1350000
P2RX7   1350000 perm   1062 sec   (1272 perm/sec)   p_kst 3.313333e-03   p_cons 1.493333e-03   p_joint 7.340741e-04

Joint ci ratio: 1.239157e-01	ci left: 6.897241e-04	ci right 7.815413e-04	k: 999	n:1360000
Cons ci ratio: 8.691734e-02	ci left: 1.428460e-03	ci right 1.558972e-03	k: 2030	n:1360000
KS ci ratio: 5.826124e-02	ci left: 3.220970e-03	ci right 3.414978e-03	k: 4511	n:1360000
P2RX7   1360000 perm   1075 sec   (1265 perm/sec)   p_kst 3.316912e-03   p_cons 1.492647e-03   p_joint 7.345588e-04

Joint ci ratio: 1.274061e-01	ci left: 6.465114e-04	ci right 7.351835e-04	k: 945	n:1370000
Cons ci ratio: 8.666179e-02	ci left: 1.426602e-03	ci right 1.556542e-03	k: 2042	n:1370000
KS ci ratio: 5.807500e-02	ci left: 3.218320e-03	ci right 3.411527e-03	k: 4540	n:1370000
P2RX7   1370000 perm   1089 sec   (1258 perm/sec)   p_kst 3.313869e-03   p_cons 1.490511e-03   p_joint 6.897810e-04

Joint ci ratio: 1.268043e-01	ci left: 6.481409e-04	ci right 7.365851e-04	k: 954	n:1380000
Cons ci ratio: 8.632439e-02	ci left: 1.427608e-03	ci right 1.557107e-03	k: 2058	n:1380000
KS ci ratio: 5.786513e-02	ci left: 3.218565e-03	ci right 3.411065e-03	k: 4573	n:1380000
P2RX7   1380000 perm   1102 sec   (1252 perm/sec)   p_kst 3.313768e-03   p_cons 1.491304e-03   p_joint 6.913043e-04

Joint ci ratio: 1.264078e-01	ci left: 6.476578e-04	ci right 7.357391e-04	k: 960	n:1390000
Cons ci ratio: 8.603243e-02	ci left: 1.427192e-03	ci right 1.556194e-03	k: 2072	n:1390000
KS ci ratio: 5.770780e-02	ci left: 3.213135e-03	ci right 3.404771e-03	k: 4598	n:1390000
P2RX7   1390000 perm   1116 sec   (1245 perm/sec)   p_kst 3.307914e-03   p_cons 1.490647e-03   p_joint 6.906475e-04

Joint ci ratio: 1.260804e-01	ci left: 6.464903e-04	ci right 7.341680e-04	k: 965	n:1400000
Cons ci ratio: 8.584646e-02	ci left: 1.423288e-03	ci right 1.551645e-03	k: 2081	n:1400000
KS ci ratio: 5.746454e-02	ci left: 3.217640e-03	ci right 3.408709e-03	k: 4637	n:1400000
P2RX7   1400000 perm   1130 sec   (1239 perm/sec)   p_kst 3.312143e-03   p_cons 1.486429e-03   p_joint 6.892857e-04

Joint ci ratio: 1.256907e-01	ci left: 6.460266e-04	ci right 7.333504e-04	k: 971	n:1410000
Cons ci ratio: 8.568221e-02	ci left: 1.418746e-03	ci right 1.546436e-03	k: 2089	n:1410000
KS ci ratio: 5.723661e-02	ci left: 3.220685e-03	ci right 3.411151e-03	k: 4674	n:1410000
P2RX7   1410000 perm   1144 sec   (1232 perm/sec)   p_kst 3.314894e-03   p_cons 1.481560e-03   p_joint 6.886525e-04

Joint ci ratio: 1.268720e-01	ci left: 6.292011e-04	ci right 7.151101e-04	k: 953	n:1420000
Cons ci ratio: 8.523456e-02	ci left: 1.423917e-03	ci right 1.551370e-03	k: 2111	n:1420000
KS ci ratio: 5.701137e-02	ci left: 3.223689e-03	ci right 3.413557e-03	k: 4711	n:1420000
P2RX7   1420000 perm   1158 sec   (1226 perm/sec)   p_kst 3.317606e-03   p_cons 1.486620e-03   p_joint 6.711268e-04

Joint ci ratio: 1.270056e-01	ci left: 6.234468e-04	ci right 7.086665e-04	k: 951	n:1430000
Cons ci ratio: 8.497350e-02	ci left: 1.422857e-03	ci right 1.549805e-03	k: 2124	n:1430000
KS ci ratio: 5.681879e-02	ci left: 3.223205e-03	ci right 3.412382e-03	k: 4743	n:1430000
P2RX7   1430000 perm   1172 sec   (1220 perm/sec)   p_kst 3.316783e-03   p_cons 1.485315e-03   p_joint 6.650350e-04

Joint ci ratio: 1.261469e-01	ci left: 6.278594e-04	ci right 7.130586e-04	k: 964	n:1440000
Cons ci ratio: 8.463557e-02	ci left: 1.424531e-03	ci right 1.551099e-03	k: 2141	n:1440000
KS ci ratio: 5.658656e-02	ci left: 3.227521e-03	ci right 3.416152e-03	k: 4782	n:1440000
P2RX7   1440000 perm   1186 sec   (1214 perm/sec)   p_kst 3.320833e-03   p_cons 1.486806e-03   p_joint 6.694444e-04

Joint ci ratio: 1.258864e-01	ci left: 6.262009e-04	ci right 7.109865e-04	k: 968	n:1450000
Cons ci ratio: 8.437996e-02	ci left: 1.423483e-03	ci right 1.549556e-03	k: 2154	n:1450000
KS ci ratio: 5.639236e-02	ci left: 3.227699e-03	ci right 3.415673e-03	k: 4815	n:1450000
P2RX7   1450000 perm   1200 sec   (1208 perm/sec)   p_kst 3.320690e-03   p_cons 1.485517e-03   p_joint 6.675862e-04

Joint ci ratio: 1.255630e-01	ci left: 6.252288e-04	ci right 7.096491e-04	k: 973	n:1460000
Cons ci ratio: 8.414609e-02	ci left: 1.421779e-03	ci right 1.547335e-03	k: 2166	n:1460000
KS ci ratio: 5.622342e-02	ci left: 3.225175e-03	ci right 3.412420e-03	k: 4844	n:1460000
P2RX7   1460000 perm   1214 sec   (1202 perm/sec)   p_kst 3.317808e-03   p_cons 1.483562e-03   p_joint 6.664384e-04

Joint ci ratio: 1.251142e-01	ci left: 6.255882e-04	ci right 7.097326e-04	k: 980	n:1470000
Cons ci ratio: 8.374113e-02	ci left: 1.426093e-03	ci right 1.551395e-03	k: 2187	n:1470000
KS ci ratio: 5.606175e-02	ci left: 3.222015e-03	ci right 3.408522e-03	k: 4872	n:1470000
P2RX7   1470000 perm   1229 sec   (1196 perm/sec)   p_kst 3.314286e-03   p_cons 1.487755e-03   p_joint 6.666667e-04

Joint ci ratio: 1.245441e-01	ci left: 6.272524e-04	ci right 7.112080e-04	k: 989	n:1480000
Cons ci ratio: 8.337977e-02	ci left: 1.429027e-03	ci right 1.554018e-03	k: 2206	n:1480000
KS ci ratio: 5.587860e-02	ci left: 3.221564e-03	ci right 3.407415e-03	k: 4904	n:1480000
P2RX7   1480000 perm   1243 sec   (1191 perm/sec)   p_kst 3.313514e-03   p_cons 1.490541e-03   p_joint 6.682432e-04

Joint ci ratio: 1.243559e-01	ci left: 6.249934e-04	ci right 7.085109e-04	k: 992	n:1490000
Cons ci ratio: 8.309786e-02	ci left: 1.429293e-03	ci right 1.553865e-03	k: 2221	n:1490000
KS ci ratio: 5.577096e-02	ci left: 3.212516e-03	ci right 3.397477e-03	k: 4923	n:1490000
P2RX7   1490000 perm   1258 sec   (1185 perm/sec)   p_kst 3.304027e-03   p_cons 1.490604e-03   p_joint 6.657718e-04

Joint ci ratio: 1.292692e-01	ci left: 5.730568e-04	ci right 6.528918e-04	k: 918	n:1500000
Cons ci ratio: 8.285589e-02	ci left: 1.428252e-03	ci right 1.552353e-03	k: 2234	n:1500000
KS ci ratio: 5.555129e-02	ci left: 3.216737e-03	ci right 3.401189e-03	k: 4962	n:1500000
P2RX7   1500000 perm   1272 sec   (1179 perm/sec)   p_kst 3.308000e-03   p_cons 1.489333e-03   p_joint 6.120000e-04

Joint ci ratio: 1.319547e-01	ci left: 5.455584e-04	ci right 6.232652e-04	k: 881	n:1510000
Cons ci ratio: 8.257924e-02	ci left: 1.428521e-03	ci right 1.552211e-03	k: 2249	n:1510000
KS ci ratio: 5.535085e-02	ci left: 3.218945e-03	ci right 3.402836e-03	k: 4998	n:1510000
P2RX7   1510000 perm   1287 sec   (1173 perm/sec)   p_kst 3.309934e-03   p_cons 1.489404e-03   p_joint 5.834437e-04

Joint ci ratio: 1.318801e-01	ci left: 5.426054e-04	ci right 6.198445e-04	k: 882	n:1520000
Cons ci ratio: 8.230534e-02	ci left: 1.428788e-03	ci right 1.552071e-03	k: 2264	n:1520000
KS ci ratio: 5.522965e-02	ci left: 3.212041e-03	ci right 3.395123e-03	k: 5020	n:1520000
P2RX7   1520000 perm   1302 sec   (1168 perm/sec)   p_kst 3.302632e-03   p_cons 1.489474e-03   p_joint 5.802632e-04

Joint ci ratio: 1.315084e-01	ci left: 5.422192e-04	ci right 6.191688e-04	k: 887	n:1530000
Cons ci ratio: 8.212438e-02	ci left: 1.425851e-03	ci right 1.548597e-03	k: 2274	n:1530000
KS ci ratio: 5.506545e-02	ci left: 3.210385e-03	ci right 3.392811e-03	k: 5050	n:1530000
P2RX7   1530000 perm   1317 sec   (1162 perm/sec)   p_kst 3.300654e-03   p_cons 1.486275e-03   p_joint 5.797386e-04

Joint ci ratio: 1.311397e-01	ci left: 5.418384e-04	ci right 6.185016e-04	k: 892	n:1540000
Cons ci ratio: 8.185497e-02	ci left: 1.426133e-03	ci right 1.548481e-03	k: 2289	n:1540000
KS ci ratio: 5.492982e-02	ci left: 3.205548e-03	ci right 3.387237e-03	k: 5075	n:1540000
P2RX7   1540000 perm   1332 sec   (1156 perm/sec)   p_kst 3.295455e-03   p_cons 1.486364e-03   p_joint 5.792208e-04

Joint ci ratio: 1.306287e-01	ci left: 5.427110e-04	ci right 6.191751e-04	k: 899	n:1550000
Cons ci ratio: 8.155277e-02	ci left: 1.427676e-03	ci right 1.549683e-03	k: 2306	n:1550000
KS ci ratio: 5.474138e-02	ci left: 3.207139e-03	ci right 3.388274e-03	k: 5110	n:1550000
P2RX7   1550000 perm   1347 sec   (1151 perm/sec)   p_kst 3.296774e-03   p_cons 1.487742e-03   p_joint 5.800000e-04

Joint ci ratio: 1.247987e-01	ci left: 5.926008e-04	ci right 6.720926e-04	k: 985	n:1560000
Cons ci ratio: 8.137671e-02	ci left: 1.424804e-03	ci right 1.546290e-03	k: 2316	n:1560000
KS ci ratio: 5.598077e-02	ci left: 3.045603e-03	ci right 3.221635e-03	k: 4887	n:1560000
P2RX7   1560000 perm   1362 sec   (1145 perm/sec)   p_kst 3.132692e-03   p_cons 1.484615e-03   p_joint 6.314103e-04

Joint ci ratio: 1.253087e-01	ci left: 5.838900e-04	ci right 6.625571e-04	k: 977	n:1570000
Cons ci ratio: 8.109716e-02	ci left: 1.425712e-03	ci right 1.546839e-03	k: 2332	n:1570000
KS ci ratio: 5.581548e-02	ci left: 3.044417e-03	ci right 3.219844e-03	k: 4916	n:1570000
P2RX7   1570000 perm   1377 sec   (1140 perm/sec)   p_kst 3.131210e-03   p_cons 1.485350e-03   p_joint 6.222930e-04

Joint ci ratio: 1.250533e-01	ci left: 5.826468e-04	ci right 6.609746e-04	k: 981	n:1580000
Cons ci ratio: 8.095865e-02	ci left: 1.421650e-03	ci right 1.542215e-03	k: 2340	n:1580000
KS ci ratio: 5.565165e-02	ci left: 3.043247e-03	ci right 3.218076e-03	k: 4945	n:1580000
P2RX7   1580000 perm   1393 sec   (1134 perm/sec)   p_kst 3.129747e-03   p_cons 1.481013e-03   p_joint 6.208861e-04

Joint ci ratio: 1.247362e-01	ci left: 5.820288e-04	ci right 6.600604e-04	k: 986	n:1590000
Cons ci ratio: 8.063199e-02	ci left: 1.424417e-03	ci right 1.544706e-03	k: 2359	n:1590000
KS ci ratio: 5.545013e-02	ci left: 3.046434e-03	ci right 3.220792e-03	k: 4981	n:1590000
P2RX7   1590000 perm   1408 sec   (1129 perm/sec)   p_kst 3.132704e-03   p_cons 1.483648e-03   p_joint 6.201258e-04

Joint ci ratio: 1.242962e-01	ci left: 5.826299e-04	ci right 6.604462e-04	k: 993	n:1600000
Cons ci ratio: 8.044483e-02	ci left: 1.422251e-03	ci right 1.542066e-03	k: 2370	n:1600000
KS ci ratio: 5.525632e-02	ci left: 3.048967e-03	ci right 3.222840e-03	k: 5016	n:1600000
P2RX7   1600000 perm   1424 sec   (1124 perm/sec)   p_kst 3.135000e-03   p_cons 1.481250e-03   p_joint 6.206250e-04

Joint ci ratio: 1.239227e-01	ci left: 5.826220e-04	ci right 6.601864e-04	k: 999	n:1610000
Cons ci ratio: 8.007401e-02	ci left: 1.426807e-03	ci right 1.546426e-03	k: 2392	n:1610000
KS ci ratio: 5.509187e-02	ci left: 3.048405e-03	ci right 3.221713e-03	k: 5046	n:1610000
P2RX7   1610000 perm   1440 sec   (1118 perm/sec)   p_kst 3.134161e-03   p_cons 1.485714e-03   p_joint 6.204969e-04

Joint ci ratio: 1.248636e-01	ci left: 5.700542e-04	ci right 6.465642e-04	k: 984	n:1620000
Cons ci ratio: 7.982422e-02	ci left: 1.427074e-03	ci right 1.546325e-03	k: 2407	n:1620000
KS ci ratio: 5.493974e-02	ci left: 3.046634e-03	ci right 3.219347e-03	k: 5074	n:1620000
P2RX7   1620000 perm   1455 sec   (1113 perm/sec)   p_kst 3.132099e-03   p_cons 1.485802e-03   p_joint 6.074074e-04

Joint ci ratio: 1.256319e-01	ci left: 5.594255e-04	ci right 6.350053e-04	k: 972	n:1630000
Cons ci ratio: 7.954388e-02	ci left: 1.428541e-03	ci right 1.547475e-03	k: 2424	n:1630000
KS ci ratio: 5.481041e-02	ci left: 3.042465e-03	ci right 3.214523e-03	k: 5098	n:1630000
P2RX7   1630000 perm   1471 sec   (1108 perm/sec)   p_kst 3.127607e-03   p_cons 1.487117e-03   p_joint 5.963190e-04

Joint ci ratio: 1.252463e-01	ci left: 5.595581e-04	ci right 6.349066e-04	k: 978	n:1640000
Cons ci ratio: 7.926647e-02	ci left: 1.429990e-03	ci right 1.548611e-03	k: 2441	n:1640000
KS ci ratio: 5.465525e-02	ci left: 3.041354e-03	ci right 3.212847e-03	k: 5127	n:1640000
P2RX7   1640000 perm   1487 sec   (1103 perm/sec)   p_kst 3.126220e-03   p_cons 1.488415e-03   p_joint 5.963415e-04

Joint ci ratio: 1.248643e-01	ci left: 5.596894e-04	ci right 6.348087e-04	k: 984	n:1650000
Cons ci ratio: 7.886357e-02	ci left: 1.436175e-03	ci right 1.554676e-03	k: 2466	n:1650000
KS ci ratio: 5.452261e-02	ci left: 3.037866e-03	ci right 3.208734e-03	k: 5152	n:1650000
P2RX7   1650000 perm   1503 sec   (1098 perm/sec)   p_kst 3.122424e-03   p_cons 1.494545e-03   p_joint 5.963636e-04

Joint ci ratio: 1.263492e-01	ci left: 5.428974e-04	ci right 6.166944e-04	k: 961	n:1660000
Cons ci ratio: 7.865665e-02	ci left: 1.435201e-03	ci right 1.553296e-03	k: 2479	n:1660000
KS ci ratio: 5.435935e-02	ci left: 3.037986e-03	ci right 3.208333e-03	k: 5183	n:1660000
P2RX7   1660000 perm   1519 sec   (1092 perm/sec)   p_kst 3.122289e-03   p_cons 1.493373e-03   p_joint 5.789157e-04

Joint ci ratio: 1.258920e-01	ci left: 5.437059e-04	ci right 6.173254e-04	k: 968	n:1670000
Cons ci ratio: 7.846711e-02	ci left: 1.433651e-03	ci right 1.551322e-03	k: 2491	n:1670000
KS ci ratio: 5.420797e-02	ci left: 3.036924e-03	ci right 3.206722e-03	k: 5212	n:1670000
P2RX7   1670000 perm   1536 sec   (1087 perm/sec)   p_kst 3.120958e-03   p_cons 1.491617e-03   p_joint 5.796407e-04

Joint ci ratio: 1.265472e-01	ci left: 5.347050e-04	ci right 6.075108e-04	k: 958	n:1680000
Cons ci ratio: 7.821639e-02	ci left: 1.434455e-03	ci right 1.551798e-03	k: 2507	n:1680000
KS ci ratio: 5.404751e-02	ci left: 3.037050e-03	ci right 3.206337e-03	k: 5243	n:1680000
P2RX7   1680000 perm   1552 sec   (1082 perm/sec)   p_kst 3.120833e-03   p_cons 1.492262e-03   p_joint 5.702381e-04

Joint ci ratio: 1.262186e-01	ci left: 5.344061e-04	ci right 6.069681e-04	k: 963	n:1690000
Cons ci ratio: 7.806103e-02	ci left: 1.431768e-03	ci right 1.548649e-03	k: 2517	n:1690000
KS ci ratio: 5.389872e-02	ci left: 3.036007e-03	ci right 3.204756e-03	k: 5272	n:1690000
P2RX7   1690000 perm   1568 sec   (1078 perm/sec)   p_kst 3.119527e-03   p_cons 1.489349e-03   p_joint 5.698225e-04

Joint ci ratio: 1.268790e-01	ci left: 5.255662e-04	ci right 5.973294e-04	k: 953	n:1700000
Cons ci ratio: 7.775274e-02	ci left: 1.434882e-03	ci right 1.551533e-03	k: 2537	n:1700000
KS ci ratio: 5.371559e-02	ci left: 3.039040e-03	ci right 3.207365e-03	k: 5308	n:1700000
P2RX7   1700000 perm   1585 sec   (1073 perm/sec)   p_kst 3.122353e-03   p_cons 1.492353e-03   p_joint 5.605882e-04

Joint ci ratio: 1.264160e-01	ci left: 5.264566e-04	ci right 5.980595e-04	k: 960	n:1710000
Cons ci ratio: 7.758488e-02	ci left: 1.432799e-03	ci right 1.549017e-03	k: 2548	n:1710000
KS ci ratio: 5.356449e-02	ci left: 3.038577e-03	ci right 3.206388e-03	k: 5338	n:1710000
P2RX7   1710000 perm   1602 sec   (1067 perm/sec)   p_kst 3.121637e-03   p_cons 1.490058e-03   p_joint 5.614035e-04

Joint ci ratio: 1.280259e-01	ci left: 5.098861e-04	ci right 5.801854e-04	k: 936	n:1720000
Cons ci ratio: 7.737271e-02	ci left: 1.432450e-03	ci right 1.548309e-03	k: 2562	n:1720000
KS ci ratio: 5.341964e-02	ci left: 3.037545e-03	ci right 3.204832e-03	k: 5367	n:1720000
P2RX7   1720000 perm   1618 sec   (1063 perm/sec)   p_kst 3.120349e-03   p_cons 1.489535e-03   p_joint 5.441860e-04

Joint ci ratio: 1.276179e-01	ci left: 5.102961e-04	ci right 5.804108e-04	k: 942	n:1730000
Cons ci ratio: 7.711733e-02	ci left: 1.433807e-03	ci right 1.549375e-03	k: 2579	n:1730000
KS ci ratio: 5.331065e-02	ci left: 3.032534e-03	ci right 3.199194e-03	k: 5389	n:1730000
P2RX7   1730000 perm   1635 sec   (1058 perm/sec)   p_kst 3.115029e-03   p_cons 1.490751e-03   p_joint 5.445087e-04

Joint ci ratio: 1.274155e-01	ci left: 5.090325e-04	ci right 5.788542e-04	k: 945	n:1740000
Cons ci ratio: 7.695355e-02	ci left: 1.431767e-03	ci right 1.546914e-03	k: 2590	n:1740000
KS ci ratio: 5.322206e-02	ci left: 3.025313e-03	ci right 3.191291e-03	k: 5407	n:1740000
P2RX7   1740000 perm   1652 sec   (1053 perm/sec)   p_kst 3.107471e-03   p_cons 1.488506e-03   p_joint 5.431034e-04

Joint ci ratio: 1.277539e-01	ci left: 5.033577e-04	ci right 5.725983e-04	k: 940	n:1750000
Cons ci ratio: 7.668756e-02	ci left: 1.433673e-03	ci right 1.548558e-03	k: 2608	n:1750000
KS ci ratio: 5.307506e-02	ci left: 3.024940e-03	ci right 3.190425e-03	k: 5437	n:1750000
P2RX7   1750000 perm   1669 sec   (1048 perm/sec)   p_kst 3.106857e-03   p_cons 1.490286e-03   p_joint 5.371429e-04

Joint ci ratio: 1.297705e-01	ci left: 4.845508e-04	ci right 5.523376e-04	k: 911	n:1760000
Cons ci ratio: 7.645347e-02	ci left: 1.434444e-03	ci right 1.549024e-03	k: 2624	n:1760000
KS ci ratio: 5.291472e-02	ci left: 3.026255e-03	ci right 3.191296e-03	k: 5470	n:1760000
P2RX7   1760000 perm   1686 sec   (1044 perm/sec)   p_kst 3.107955e-03   p_cons 1.490909e-03   p_joint 5.176136e-04

Joint ci ratio: 1.296286e-01	ci left: 4.829065e-04	ci right 5.503836e-04	k: 913	n:1770000
Cons ci ratio: 7.623596e-02	ci left: 1.434653e-03	ci right 1.548909e-03	k: 2639	n:1770000
KS ci ratio: 5.276544e-02	ci left: 3.026440e-03	ci right 3.191012e-03	k: 5501	n:1770000
P2RX7   1770000 perm   1703 sec   (1039 perm/sec)   p_kst 3.107910e-03   p_cons 1.490960e-03   p_joint 5.158192e-04

Joint ci ratio: 1.291349e-01	ci left: 4.839989e-04	ci right 5.513514e-04	k: 920	n:1780000
Cons ci ratio: 7.606334e-02	ci left: 1.433206e-03	ci right 1.547077e-03	k: 2651	n:1780000
KS ci ratio: 5.260312e-02	ci left: 3.028287e-03	ci right 3.192437e-03	k: 5535	n:1780000
P2RX7   1780000 perm   1720 sec   (1035 perm/sec)   p_kst 3.109551e-03   p_cons 1.489326e-03   p_joint 5.168539e-04

Joint ci ratio: 1.285776e-01	ci left: 4.856202e-04	ci right 5.528844e-04	k: 928	n:1790000
Cons ci ratio: 7.576384e-02	ci left: 1.436709e-03	ci right 1.550389e-03	k: 2672	n:1790000
KS ci ratio: 5.246591e-02	ci left: 3.027357e-03	ci right 3.191016e-03	k: 5564	n:1790000
P2RX7   1790000 perm   1738 sec   (1030 perm/sec)   p_kst 3.108380e-03   p_cons 1.492737e-03   p_joint 5.184358e-04

Joint ci ratio: 1.282330e-01	ci left: 4.856109e-04	ci right 5.526798e-04	k: 933	n:1800000
Cons ci ratio: 7.556622e-02	ci left: 1.436358e-03	ci right 1.549700e-03	k: 2686	n:1800000
KS ci ratio: 5.229696e-02	ci left: 3.030277e-03	ci right 3.193550e-03	k: 5600	n:1800000
P2RX7   1800000 perm   1755 sec   (1026 perm/sec)   p_kst 3.111111e-03   p_cons 1.492222e-03   p_joint 5.183333e-04

Joint ci ratio: 1.278911e-01	ci left: 4.856019e-04	ci right 5.524772e-04	k: 938	n:1810000
Cons ci ratio: 7.539811e-02	ci left: 1.434927e-03	ci right 1.547894e-03	k: 2698	n:1810000
KS ci ratio: 5.213426e-02	ci left: 3.032620e-03	ci right 3.195496e-03	k: 5635	n:1810000
P2RX7   1810000 perm   1772 sec   (1021 perm/sec)   p_kst 3.113260e-03   p_cons 1.490608e-03   p_joint 5.182320e-04

Joint ci ratio: 1.277553e-01	ci left: 4.839975e-04	ci right 5.505757e-04	k: 940	n:1820000
Cons ci ratio: 7.525892e-02	ci left: 1.432433e-03	ci right 1.544987e-03	k: 2708	n:1820000
KS ci ratio: 5.197768e-02	ci left: 3.034395e-03	ci right 3.196863e-03	k: 5669	n:1820000
P2RX7   1820000 perm   1789 sec   (1017 perm/sec)   p_kst 3.114835e-03   p_cons 1.487912e-03   p_joint 5.164835e-04

Joint ci ratio: 1.274172e-01	ci left: 4.839977e-04	ci right 5.503864e-04	k: 945	n:1830000
Cons ci ratio: 7.506522e-02	ci left: 1.432112e-03	ci right 1.544338e-03	k: 2722	n:1830000
KS ci ratio: 5.181794e-02	ci left: 3.036691e-03	ci right 3.198767e-03	k: 5704	n:1830000
P2RX7   1830000 perm   1807 sec   (1013 perm/sec)   p_kst 3.116940e-03   p_cons 1.487432e-03   p_joint 5.163934e-04

Joint ci ratio: 1.283025e-01	ci left: 4.745279e-04	ci right 5.401043e-04	k: 932	n:1840000
Cons ci ratio: 7.481828e-02	ci left: 1.433928e-03	ci right 1.545911e-03	k: 2740	n:1840000
KS ci ratio: 5.169129e-02	ci left: 3.035208e-03	ci right 3.196797e-03	k: 5732	n:1840000
P2RX7   1840000 perm   1824 sec   (1009 perm/sec)   p_kst 3.115217e-03   p_cons 1.489130e-03   p_joint 5.065217e-04

Joint ci ratio: 1.303454e-01	ci left: 4.567940e-04	ci right 5.210027e-04	k: 903	n:1850000
Cons ci ratio: 7.461439e-02	ci left: 1.434134e-03	ci right 1.545814e-03	k: 2755	n:1850000
KS ci ratio: 5.153865e-02	ci left: 3.036943e-03	ci right 3.198132e-03	k: 5766	n:1850000
P2RX7   1850000 perm   1842 sec   (1004 perm/sec)   p_kst 3.116757e-03   p_cons 1.489189e-03   p_joint 4.881081e-04

Joint ci ratio: 1.299149e-01	ci left: 4.574590e-04	ci right 5.215323e-04	k: 909	n:1860000
Cons ci ratio: 7.445254e-02	ci left: 1.432755e-03	ci right 1.544075e-03	k: 2767	n:1860000
KS ci ratio: 5.138291e-02	ci left: 3.039190e-03	ci right 3.199997e-03	k: 5801	n:1860000
P2RX7   1860000 perm   1860 sec   (1000 perm/sec)   p_kst 3.118817e-03   p_cons 1.487634e-03   p_joint 4.887097e-04

Joint ci ratio: 1.297014e-01	ci left: 4.565648e-04	ci right 5.203997e-04	k: 912	n:1870000
Cons ci ratio: 7.427836e-02	ci left: 1.431916e-03	ci right 1.542899e-03	k: 2780	n:1870000
KS ci ratio: 5.124178e-02	ci left: 3.039831e-03	ci right 3.200217e-03	k: 5833	n:1870000
P2RX7   1870000 perm   1878 sec   (996 perm/sec)   p_kst 3.119251e-03   p_cons 1.486631e-03   p_joint 4.877005e-04

Joint ci ratio: 1.291367e-01	ci left: 4.582539e-04	ci right 5.220246e-04	k: 920	n:1880000
Cons ci ratio: 7.407884e-02	ci left: 1.432130e-03	ci right 1.542819e-03	k: 2795	n:1880000
KS ci ratio: 5.110618e-02	ci left: 3.039940e-03	ci right 3.199895e-03	k: 5864	n:1880000
P2RX7   1880000 perm   1896 sec   (992 perm/sec)   p_kst 3.119149e-03   p_cons 1.486702e-03   p_joint 4.893617e-04

Joint ci ratio: 1.287181e-01	ci left: 4.589015e-04	ci right 5.225395e-04	k: 926	n:1890000
Cons ci ratio: 7.389409e-02	ci left: 1.431823e-03	ci right 1.542200e-03	k: 2809	n:1890000
KS ci ratio: 5.096299e-02	ci left: 3.041093e-03	ci right 3.200647e-03	k: 5897	n:1890000
P2RX7   1890000 perm   1913 sec   (988 perm/sec)   p_kst 3.120106e-03   p_cons 1.486243e-03   p_joint 4.899471e-04

Joint ci ratio: 1.283723e-01	ci left: 4.590332e-04	ci right 5.225055e-04	k: 931	n:1900000
Cons ci ratio: 7.367153e-02	ci left: 1.433069e-03	ci right 1.543196e-03	k: 2826	n:1900000
KS ci ratio: 5.081669e-02	ci left: 3.042754e-03	ci right 3.201924e-03	k: 5931	n:1900000
P2RX7   1900000 perm   1932 sec   (984 perm/sec)   p_kst 3.121579e-03   p_cons 1.487368e-03   p_joint 4.900000e-04

Joint ci ratio: 1.283725e-01	ci left: 4.566298e-04	ci right 5.197699e-04	k: 931	n:1910000
Cons ci ratio: 7.338640e-02	ci left: 1.436873e-03	ci right 1.546846e-03	k: 2848	n:1910000
KS ci ratio: 5.067590e-02	ci left: 3.043882e-03	ci right 3.202656e-03	k: 5964	n:1910000
P2RX7   1910000 perm   1950 sec   (980 perm/sec)   p_kst 3.122513e-03   p_cons 1.491099e-03   p_joint 4.874346e-04

Joint ci ratio: 1.278930e-01	ci left: 4.577805e-04	ci right 5.208254e-04	k: 938	n:1920000
Cons ci ratio: 7.315561e-02	ci left: 1.438593e-03	ci right 1.548337e-03	k: 2866	n:1920000
KS ci ratio: 5.053206e-02	ci left: 3.045513e-03	ci right 3.203908e-03	k: 5998	n:1920000
P2RX7   1920000 perm   1968 sec   (975 perm/sec)   p_kst 3.123958e-03   p_cons 1.492708e-03   p_joint 4.885417e-04

Joint ci ratio: 1.274189e-01	ci left: 4.589197e-04	ci right 5.218695e-04	k: 945	n:1930000
Cons ci ratio: 7.304116e-02	ci left: 1.435717e-03	ci right 1.545063e-03	k: 2875	n:1930000
KS ci ratio: 5.041039e-02	ci left: 3.044569e-03	ci right 3.202523e-03	k: 6027	n:1930000
P2RX7   1930000 perm   1986 sec   (972 perm/sec)   p_kst 3.122798e-03   p_cons 1.489637e-03   p_joint 4.896373e-04

Joint ci ratio: 1.269500e-01	ci left: 4.600476e-04	ci right 5.229024e-04	k: 952	n:1940000
Cons ci ratio: 7.282620e-02	ci left: 1.436919e-03	ci right 1.546021e-03	k: 2892	n:1940000
KS ci ratio: 5.028543e-02	ci left: 3.044145e-03	ci right 3.201674e-03	k: 6057	n:1940000
P2RX7   1940000 perm   2005 sec   (968 perm/sec)   p_kst 3.122165e-03   p_cons 1.490722e-03   p_joint 4.907216e-04

Joint ci ratio: 1.268836e-01	ci left: 4.581849e-04	ci right 5.207500e-04	k: 953	n:1950000
Cons ci ratio: 7.267569e-02	ci left: 1.435592e-03	ci right 1.544359e-03	k: 2904	n:1950000
KS ci ratio: 5.016140e-02	ci left: 3.043725e-03	ci right 3.200833e-03	k: 6087	n:1950000
P2RX7   1950000 perm   2023 sec   (964 perm/sec)   p_kst 3.121538e-03   p_cons 1.489231e-03   p_joint 4.887179e-04

Joint ci ratio: 1.289281e-01	ci left: 4.410306e-04	ci right 5.022978e-04	k: 923	n:1960000
Cons ci ratio: 7.240192e-02	ci left: 1.439289e-03	ci right 1.547907e-03	k: 2926	n:1960000
KS ci ratio: 5.005469e-02	ci left: 3.041295e-03	ci right 3.197934e-03	k: 6113	n:1960000
P2RX7   1960000 perm   2042 sec   (960 perm/sec)   p_kst 3.118878e-03   p_cons 1.492857e-03   p_joint 4.709184e-04

Joint ci ratio: 1.348231e-01	ci left: 4.000121e-04	ci right 4.583257e-04	k: 844	n:1970000
Cons ci ratio: 7.226633e-02	ci left: 1.437465e-03	ci right 1.545734e-03	k: 2937	n:1970000
KS ci ratio: 4.992828e-02	ci left: 3.041396e-03	ci right 3.197633e-03	k: 6144	n:1970000
P2RX7   1970000 perm   2060 sec   (956 perm/sec)   p_kst 3.118782e-03   p_cons 1.490863e-03   p_joint 4.284264e-04

Joint ci ratio: 1.345845e-01	ci left: 3.994559e-04	ci right 4.575771e-04	k: 847	n:1980000
Cons ci ratio: 7.208255e-02	ci left: 1.437644e-03	ci right 1.545640e-03	k: 2952	n:1980000
KS ci ratio: 4.981496e-02	ci left: 3.040001e-03	ci right 3.195801e-03	k: 6172	n:1980000
P2RX7   1980000 perm   2079 sec   (952 perm/sec)   p_kst 3.117172e-03   p_cons 1.490909e-03   p_joint 4.277778e-04

Joint ci ratio: 1.343471e-01	ci left: 3.989054e-04	ci right 4.568360e-04	k: 850	n:1990000
Cons ci ratio: 7.196090e-02	ci left: 1.435355e-03	ci right 1.542989e-03	k: 2962	n:1990000
KS ci ratio: 4.972654e-02	ci left: 3.035642e-03	ci right 3.190935e-03	k: 6194	n:1990000
P2RX7   1990000 perm   2098 sec   (948 perm/sec)   p_kst 3.112563e-03   p_cons 1.488442e-03   p_joint 4.271357e-04

Joint ci ratio: 1.340325e-01	ci left: 3.988437e-04	ci right 4.566189e-04	k: 854	n:2000000
Cons ci ratio: 7.176737e-02	ci left: 1.436034e-03	ci right 1.543418e-03	k: 2978	n:2000000
KS ci ratio: 4.957065e-02	ci left: 3.039722e-03	ci right 3.194722e-03	k: 6233	n:2000000
P2RX7   2000000 perm   2117 sec   (945 perm/sec)   p_kst 3.116500e-03   p_cons 1.489000e-03   p_joint 4.270000e-04

Joint ci ratio: 1.337201e-01	ci left: 3.987828e-04	ci right 4.564038e-04	k: 858	n:2010000
Cons ci ratio: 7.159934e-02	ci left: 1.435730e-03	ci right 1.542829e-03	k: 2992	n:2010000
KS ci ratio: 4.944786e-02	ci left: 3.039831e-03	ci right 3.194442e-03	k: 6264	n:2010000
P2RX7   2010000 perm   2136 sec   (941 perm/sec)   p_kst 3.116418e-03   p_cons 1.488557e-03   p_joint 4.268657e-04

Joint ci ratio: 1.347441e-01	ci left: 3.905890e-04	ci right 4.474929e-04	k: 845	n:2020000
Cons ci ratio: 7.146820e-02	ci left: 1.433971e-03	ci right 1.540734e-03	k: 3003	n:2020000
KS ci ratio: 4.931420e-02	ci left: 3.041406e-03	ci right 3.195667e-03	k: 6298	n:2020000
P2RX7   2020000 perm   2155 sec   (937 perm/sec)   p_kst 3.117822e-03   p_cons 1.486634e-03   p_joint 4.183168e-04

Joint ci ratio: 1.345059e-01	ci left: 3.900930e-04	ci right 4.468161e-04	k: 848	n:2030000
Cons ci ratio: 7.133777e-02	ci left: 1.432229e-03	ci right 1.538660e-03	k: 3014	n:2030000
KS ci ratio: 4.917771e-02	ci left: 3.043453e-03	ci right 3.197379e-03	k: 6333	n:2030000
P2RX7   2030000 perm   2175 sec   (933 perm/sec)   p_kst 3.119704e-03   p_cons 1.484729e-03   p_joint 4.177340e-04

Joint ci ratio: 1.342689e-01	ci left: 3.896019e-04	ci right 4.461458e-04	k: 851	n:2040000
Cons ci ratio: 7.117274e-02	ci left: 1.431948e-03	ci right 1.538102e-03	k: 3028	n:2040000
KS ci ratio: 4.908102e-02	ci left: 3.040638e-03	ci right 3.194111e-03	k: 6358	n:2040000
P2RX7   2040000 perm   2194 sec   (930 perm/sec)   p_kst 3.116667e-03   p_cons 1.484314e-03   p_joint 4.171569e-04

Joint ci ratio: 1.341117e-01	ci left: 3.886442e-04	ci right 4.449778e-04	k: 853	n:2050000
Cons ci ratio: 7.100884e-02	ci left: 1.431671e-03	ci right 1.537550e-03	k: 3042	n:2050000
KS ci ratio: 4.899645e-02	ci left: 3.036406e-03	ci right 3.189393e-03	k: 6380	n:2050000
P2RX7   2050000 perm   2214 sec   (926 perm/sec)   p_kst 3.112195e-03   p_cons 1.483902e-03   p_joint 4.160976e-04

Joint ci ratio: 1.338768e-01	ci left: 3.881651e-04	ci right 4.443229e-04	k: 856	n:2060000
Cons ci ratio: 7.078812e-02	ci left: 1.433781e-03	ci right 1.539473e-03	k: 3061	n:2060000
KS ci ratio: 4.887787e-02	ci left: 3.036531e-03	ci right 3.189143e-03	k: 6411	n:2060000
P2RX7   2060000 perm   2234 sec   (922 perm/sec)   p_kst 3.112136e-03   p_cons 1.485922e-03   p_joint 4.155340e-04

Joint ci ratio: 1.335654e-01	ci left: 3.881576e-04	ci right 4.441734e-04	k: 860	n:2070000
Cons ci ratio: 7.060387e-02	ci left: 1.434447e-03	ci right 1.539902e-03	k: 3077	n:2070000
KS ci ratio: 4.880195e-02	ci left: 3.031405e-03	ci right 3.183517e-03	k: 6431	n:2070000
P2RX7   2070000 perm   2253 sec   (919 perm/sec)   p_kst 3.106763e-03   p_cons 1.486473e-03   p_joint 4.154589e-04

Joint ci ratio: 1.333334e-01	ci left: 3.876856e-04	ci right 4.435283e-04	k: 863	n:2080000
Cons ci ratio: 7.047812e-02	ci left: 1.432746e-03	ci right 1.537880e-03	k: 3088	n:2080000
KS ci ratio: 4.866212e-02	ci left: 3.034403e-03	ci right 3.186217e-03	k: 6468	n:2080000
P2RX7   2080000 perm   2273 sec   (915 perm/sec)   p_kst 3.109615e-03   p_cons 1.484615e-03   p_joint 4.149038e-04

Joint ci ratio: 1.330258e-01	ci left: 3.876808e-04	ci right 4.433838e-04	k: 867	n:2090000
Cons ci ratio: 7.033031e-02	ci left: 1.432002e-03	ci right 1.536852e-03	k: 3101	n:2090000
KS ci ratio: 4.857593e-02	ci left: 3.030755e-03	ci right 3.182110e-03	k: 6491	n:2090000
P2RX7   2090000 perm   2293 sec   (912 perm/sec)   p_kst 3.105742e-03   p_cons 1.483732e-03   p_joint 4.148325e-04

Joint ci ratio: 1.327966e-01	ci left: 3.872158e-04	ci right 4.427485e-04	k: 870	n:2100000
Cons ci ratio: 7.017215e-02	ci left: 1.431732e-03	ci right 1.536317e-03	k: 3115	n:2100000
KS ci ratio: 4.845664e-02	ci left: 3.031376e-03	ci right 3.182380e-03	k: 6523	n:2100000
P2RX7   2100000 perm   2312 sec   (908 perm/sec)   p_kst 3.106190e-03   p_cons 1.483333e-03   p_joint 4.142857e-04

Joint ci ratio: 1.326444e-01	ci left: 3.862970e-04	ci right 4.416295e-04	k: 872	n:2110000
Cons ci ratio: 7.003747e-02	ci left: 1.430534e-03	ci right 1.534823e-03	k: 3127	n:2110000
KS ci ratio: 4.832344e-02	ci left: 3.033865e-03	ci right 3.184566e-03	k: 6559	n:2110000
P2RX7   2110000 perm   2333 sec   (905 perm/sec)   p_kst 3.108531e-03   p_cons 1.481991e-03   p_joint 4.132701e-04

Joint ci ratio: 1.324928e-01	ci left: 3.853869e-04	ci right 4.405210e-04	k: 874	n:2120000
Cons ci ratio: 6.992586e-02	ci left: 1.428421e-03	ci right 1.532383e-03	k: 3137	n:2120000
KS ci ratio: 4.819867e-02	ci left: 3.035398e-03	ci right 3.185775e-03	k: 6593	n:2120000
P2RX7   2120000 perm   2353 sec   (901 perm/sec)   p_kst 3.109906e-03   p_cons 1.479717e-03   p_joint 4.122642e-04

Joint ci ratio: 1.321910e-01	ci left: 3.853934e-04	ci right 4.403929e-04	k: 878	n:2130000
Cons ci ratio: 6.977041e-02	ci left: 1.428172e-03	ci right 1.531876e-03	k: 3151	n:2130000
KS ci ratio: 4.807849e-02	ci left: 3.036454e-03	ci right 3.186498e-03	k: 6626	n:2130000
P2RX7   2130000 perm   2373 sec   (898 perm/sec)   p_kst 3.110798e-03   p_cons 1.479343e-03   p_joint 4.122066e-04

Joint ci ratio: 1.329499e-01	ci left: 3.790745e-04	ci right 4.335073e-04	k: 868	n:2140000
Cons ci ratio: 6.956100e-02	ci left: 1.430223e-03	ci right 1.533751e-03	k: 3170	n:2140000
KS ci ratio: 4.795199e-02	ci left: 3.038424e-03	ci right 3.188159e-03	k: 6661	n:2140000
P2RX7   2140000 perm   2393 sec   (894 perm/sec)   p_kst 3.112617e-03   p_cons 1.481308e-03   p_joint 4.056075e-04

Joint ci ratio: 1.324175e-01	ci left: 3.804591e-04	ci right 4.348548e-04	k: 875	n:2150000
Cons ci ratio: 6.939706e-02	ci left: 1.430426e-03	ci right 1.533715e-03	k: 3185	n:2150000
KS ci ratio: 4.785874e-02	ci left: 3.036240e-03	ci right 3.185569e-03	k: 6687	n:2150000
P2RX7   2150000 perm   2414 sec   (891 perm/sec)   p_kst 3.110233e-03   p_cons 1.481395e-03   p_joint 4.069767e-04

Joint ci ratio: 1.322667e-01	ci left: 3.795930e-04	ci right 4.337982e-04	k: 877	n:2160000
Cons ci ratio: 6.926678e-02	ci left: 1.429263e-03	ci right 1.532266e-03	k: 3197	n:2160000
KS ci ratio: 4.774465e-02	ci left: 3.036821e-03	ci right 3.185813e-03	k: 6719	n:2160000
P2RX7   2160000 perm   2434 sec   (887 perm/sec)   p_kst 3.110648e-03   p_cons 1.480093e-03   p_joint 4.060185e-04

Joint ci ratio: 1.543269e-01	ci left: 2.742959e-04	ci right 3.206032e-04	k: 644	n:2170000
Cons ci ratio: 6.911567e-02	ci left: 1.429016e-03	ci right 1.531768e-03	k: 3211	n:2170000
KS ci ratio: 4.569936e-02	ci left: 3.302026e-03	ci right 3.456907e-03	k: 7332	n:2170000
P2RX7   2170000 perm   2454 sec   (884 perm/sec)   p_kst 3.378802e-03   p_cons 1.479724e-03   p_joint 2.967742e-04

Joint ci ratio: 1.538505e-01	ci left: 2.748018e-04	ci right 3.210381e-04	k: 648	n:2180000
Cons ci ratio: 6.896555e-02	ci left: 1.428772e-03	ci right 1.531275e-03	k: 3225	n:2180000
KS ci ratio: 4.555656e-02	ci left: 3.307740e-03	ci right 3.462391e-03	k: 7378	n:2180000
P2RX7   2180000 perm   2475 sec   (881 perm/sec)   p_kst 3.384404e-03   p_cons 1.479358e-03   p_joint 2.972477e-04

Joint ci ratio: 1.530273e-01	ci left: 2.766206e-04	ci right 3.228911e-04	k: 655	n:2190000
Cons ci ratio: 6.878452e-02	ci left: 1.429877e-03	ci right 1.532179e-03	k: 3242	n:2190000
KS ci ratio: 4.547352e-02	ci left: 3.304824e-03	ci right 3.459051e-03	k: 7405	n:2190000
P2RX7   2190000 perm   2495 sec   (878 perm/sec)   p_kst 3.381279e-03   p_cons 1.480365e-03   p_joint 2.990868e-04

Joint ci ratio: 1.527946e-01	ci left: 2.762375e-04	ci right 3.223673e-04	k: 657	n:2200000
Cons ci ratio: 6.857331e-02	ci left: 1.432313e-03	ci right 1.534461e-03	k: 3262	n:2200000
KS ci ratio: 4.538786e-02	ci left: 3.302385e-03	ci right 3.456199e-03	k: 7433	n:2200000
P2RX7   2200000 perm   2516 sec   (874 perm/sec)   p_kst 3.378636e-03   p_cons 1.482727e-03   p_joint 2.986364e-04

Joint ci ratio: 1.523323e-01	ci left: 2.767285e-04	ci right 3.227876e-04	k: 661	n:2210000
Cons ci ratio: 6.838490e-02	ci left: 1.433837e-03	ci right 1.535802e-03	k: 3280	n:2210000
KS ci ratio: 4.528442e-02	ci left: 3.302652e-03	ci right 3.456120e-03	k: 7467	n:2210000
P2RX7   2210000 perm   2537 sec   (871 perm/sec)   p_kst 3.378733e-03   p_cons 1.484163e-03   p_joint 2.990950e-04

Joint ci ratio: 1.517602e-01	ci left: 2.776485e-04	ci right 3.236714e-04	k: 666	n:2220000
Cons ci ratio: 6.819804e-02	ci left: 1.435348e-03	ci right 1.537131e-03	k: 3298	n:2220000
KS ci ratio: 4.513643e-02	ci left: 3.309598e-03	ci right 3.462873e-03	k: 7516	n:2220000
P2RX7   2220000 perm   2558 sec   (868 perm/sec)   p_kst 3.385586e-03   p_cons 1.485586e-03   p_joint 3.000000e-04

Joint ci ratio: 1.515332e-01	ci left: 2.772663e-04	ci right 3.231509e-04	k: 668	n:2230000
Cons ci ratio: 6.806409e-02	ci left: 1.434642e-03	ci right 1.536167e-03	k: 3311	n:2230000
KS ci ratio: 4.504966e-02	ci left: 3.307615e-03	ci right 3.460495e-03	k: 7545	n:2230000
P2RX7   2230000 perm   2579 sec   (865 perm/sec)   p_kst 3.383408e-03   p_cons 1.484753e-03   p_joint 2.995516e-04

Joint ci ratio: 1.513072e-01	ci left: 2.768875e-04	ci right 3.226349e-04	k: 670	n:2240000
Cons ci ratio: 6.793093e-02	ci left: 1.433942e-03	ci right 1.535211e-03	k: 3324	n:2240000
KS ci ratio: 4.493959e-02	ci left: 3.309181e-03	ci right 3.461750e-03	k: 7582	n:2240000
P2RX7   2240000 perm   2599 sec   (862 perm/sec)   p_kst 3.384821e-03   p_cons 1.483929e-03   p_joint 2.991071e-04

Joint ci ratio: 1.511947e-01	ci left: 2.760845e-04	ci right 3.216622e-04	k: 671	n:2250000
Cons ci ratio: 6.775791e-02	ci left: 1.434996e-03	ci right 1.536072e-03	k: 3341	n:2250000
KS ci ratio: 4.483327e-02	ci left: 3.310294e-03	ci right 3.462544e-03	k: 7618	n:2250000
P2RX7   2250000 perm   2621 sec   (858 perm/sec)   p_kst 3.385778e-03   p_cons 1.484889e-03   p_joint 2.982222e-04

Joint ci ratio: 1.522178e-01	ci left: 2.710317e-04	ci right 3.161057e-04	k: 662	n:2260000
Cons ci ratio: 6.758619e-02	ci left: 1.436042e-03	ci right 1.536924e-03	k: 3358	n:2260000
KS ci ratio: 4.472770e-02	ci left: 3.311398e-03	ci right 3.463331e-03	k: 7654	n:2260000
P2RX7   2260000 perm   2642 sec   (855 perm/sec)   p_kst 3.386726e-03   p_cons 1.485841e-03   p_joint 2.929204e-04

Joint ci ratio: 1.521032e-01	ci left: 2.702615e-04	ci right 3.151704e-04	k: 663	n:2270000
Cons ci ratio: 6.748589e-02	ci left: 1.434046e-03	ci right 1.534633e-03	k: 3368	n:2270000
KS ci ratio: 4.464036e-02	ci left: 3.309878e-03	ci right 3.461437e-03	k: 7684	n:2270000
P2RX7   2270000 perm   2663 sec   (853 perm/sec)   p_kst 3.385022e-03   p_cons 1.483700e-03   p_joint 2.920705e-04

Joint ci ratio: 1.519889e-01	ci left: 2.694980e-04	ci right 3.142434e-04	k: 664	n:2280000
Cons ci ratio: 6.739601e-02	ci left: 1.431637e-03	ci right 1.531916e-03	k: 3377	n:2280000
KS ci ratio: 4.454772e-02	ci left: 3.309240e-03	ci right 3.460447e-03	k: 7716	n:2280000
P2RX7   2280000 perm   2684 sec   (850 perm/sec)   p_kst 3.384211e-03   p_cons 1.481140e-03   p_joint 2.912281e-04

Joint ci ratio: 1.517609e-01	ci left: 2.691614e-04	ci right 3.137777e-04	k: 666	n:2290000
Cons ci ratio: 6.725680e-02	ci left: 1.431396e-03	ci right 1.531443e-03	k: 3391	n:2290000
KS ci ratio: 4.443553e-02	ci left: 3.311630e-03	ci right 3.462556e-03	k: 7755	n:2290000
P2RX7   2290000 perm   2705 sec   (846 perm/sec)   p_kst 3.386463e-03   p_cons 1.480786e-03   p_joint 2.908297e-04

Joint ci ratio: 1.509706e-01	ci left: 2.709193e-04	ci right 3.155721e-04	k: 673	n:2300000
Cons ci ratio: 6.704947e-02	ci left: 1.434150e-03	ci right 1.534069e-03	k: 3412	n:2300000
KS ci ratio: 4.432418e-02	ci left: 3.314000e-03	ci right 3.464646e-03	k: 7794	n:2300000
P2RX7   2300000 perm   2727 sec   (843 perm/sec)   p_kst 3.388696e-03   p_cons 1.483478e-03   p_joint 2.926087e-04

Joint ci ratio: 1.506357e-01	ci left: 2.709962e-04	ci right 3.155536e-04	k: 676	n:2310000
Cons ci ratio: 6.691239e-02	ci left: 1.433901e-03	ci right 1.533590e-03	k: 3426	n:2310000
KS ci ratio: 4.421367e-02	ci left: 3.316350e-03	ci right 3.466717e-03	k: 7833	n:2310000
P2RX7   2310000 perm   2749 sec   (840 perm/sec)   p_kst 3.390909e-03   p_cons 1.483117e-03   p_joint 2.926407e-04

Joint ci ratio: 1.501926e-01	ci left: 2.714874e-04	ci right 3.159824e-04	k: 680	n:2320000
Cons ci ratio: 6.679559e-02	ci left: 1.432806e-03	ci right 1.532238e-03	k: 3438	n:2320000
KS ci ratio: 4.412084e-02	ci left: 3.316122e-03	ci right 3.466156e-03	k: 7866	n:2320000
P2RX7   2320000 perm   2771 sec   (837 perm/sec)   p_kst 3.390517e-03   p_cons 1.481897e-03   p_joint 2.931034e-04

Joint ci ratio: 1.497535e-01	ci left: 2.719745e-04	ci right 3.164074e-04	k: 684	n:2330000
Cons ci ratio: 6.666972e-02	ci left: 1.432143e-03	ci right 1.531335e-03	k: 3451	n:2330000
KS ci ratio: 4.401743e-02	ci left: 3.317595e-03	ci right 3.467334e-03	k: 7903	n:2330000
P2RX7   2330000 perm   2793 sec   (834 perm/sec)   p_kst 3.391845e-03   p_cons 1.481116e-03   p_joint 2.935622e-04

Joint ci ratio: 1.493181e-01	ci left: 2.724577e-04	ci right 3.168285e-04	k: 688	n:2340000
Cons ci ratio: 6.655418e-02	ci left: 1.431065e-03	ci right 1.530004e-03	k: 3463	n:2340000
KS ci ratio: 4.390086e-02	ci left: 3.321169e-03	ci right 3.470662e-03	k: 7945	n:2340000
P2RX7   2340000 perm   2814 sec   (832 perm/sec)   p_kst 3.395299e-03   p_cons 1.479915e-03   p_joint 2.940171e-04

Joint ci ratio: 1.489941e-01	ci left: 2.725272e-04	ci right 3.168045e-04	k: 691	n:2350000
Cons ci ratio: 6.640099e-02	ci left: 1.431671e-03	ci right 1.530415e-03	k: 3479	n:2350000
KS ci ratio: 4.379898e-02	ci left: 3.322608e-03	ci right 3.471811e-03	k: 7982	n:2350000
P2RX7   2350000 perm   2837 sec   (828 perm/sec)   p_kst 3.396596e-03   p_cons 1.480426e-03   p_joint 2.940426e-04

Joint ci ratio: 1.484586e-01	ci left: 2.734123e-04	ci right 3.176596e-04	k: 696	n:2360000
Cons ci ratio: 6.627734e-02	ci left: 1.431022e-03	ci right 1.529530e-03	k: 3492	n:2360000
KS ci ratio: 4.370327e-02	ci left: 3.323198e-03	ci right 3.472093e-03	k: 8017	n:2360000
P2RX7   2360000 perm   2859 sec   (826 perm/sec)   p_kst 3.397034e-03   p_cons 1.479661e-03   p_joint 2.949153e-04

Joint ci ratio: 1.482461e-01	ci left: 2.730712e-04	ci right 3.171944e-04	k: 698	n:2370000
Cons ci ratio: 6.620166e-02	ci left: 1.428303e-03	ci right 1.526508e-03	k: 3500	n:2370000
KS ci ratio: 4.360819e-02	ci left: 3.323783e-03	ci right 3.472372e-03	k: 8052	n:2370000
P2RX7   2370000 perm   2881 sec   (823 perm/sec)   p_kst 3.397468e-03   p_cons 1.476793e-03   p_joint 2.945148e-04

Joint ci ratio: 1.478237e-01	ci left: 2.735423e-04	ci right 3.176045e-04	k: 702	n:2380000
Cons ci ratio: 6.610739e-02	ci left: 1.426434e-03	ci right 1.524365e-03	k: 3510	n:2380000
KS ci ratio: 4.351912e-02	ci left: 3.323532e-03	ci right 3.471798e-03	k: 8085	n:2380000
P2RX7   2380000 perm   2903 sec   (820 perm/sec)   p_kst 3.397059e-03   p_cons 1.474790e-03   p_joint 2.949580e-04

Joint ci ratio: 1.476139e-01	ci left: 2.732036e-04	ci right 3.171434e-04	k: 704	n:2390000
Cons ci ratio: 6.595725e-02	ci left: 1.427050e-03	ci right 1.524792e-03	k: 3526	n:2390000
KS ci ratio: 4.343328e-02	ci left: 3.322869e-03	ci right 3.470807e-03	k: 8117	n:2390000
P2RX7   2390000 perm   2926 sec   (817 perm/sec)   p_kst 3.396234e-03   p_cons 1.475314e-03   p_joint 2.945607e-04

Joint ci ratio: 1.474050e-01	ci left: 2.728678e-04	ci right 3.166860e-04	k: 706	n:2400000
Cons ci ratio: 6.579884e-02	ci left: 1.428070e-03	ci right 1.525639e-03	k: 3543	n:2400000
KS ci ratio: 4.335862e-02	ci left: 3.320564e-03	ci right 3.468138e-03	k: 8145	n:2400000
P2RX7   2400000 perm   2948 sec   (814 perm/sec)   p_kst 3.393750e-03   p_cons 1.476250e-03   p_joint 2.941667e-04

Joint ci ratio: 1.471970e-01	ci left: 2.725349e-04	ci right 3.162324e-04	k: 708	n:2410000
Cons ci ratio: 6.563233e-02	ci left: 1.429491e-03	ci right 1.526900e-03	k: 3561	n:2410000
KS ci ratio: 4.327373e-02	ci left: 3.319920e-03	ci right 3.467169e-03	k: 8177	n:2410000
P2RX7   2410000 perm   2971 sec   (811 perm/sec)   p_kst 3.392946e-03   p_cons 1.477593e-03   p_joint 2.937759e-04

Joint ci ratio: 1.515350e-01	ci left: 2.554972e-04	ci right 2.977798e-04	k: 668	n:2420000
Cons ci ratio: 6.553128e-02	ci left: 1.428055e-03	ci right 1.525211e-03	k: 3572	n:2420000
KS ci ratio: 4.314716e-02	ci left: 3.325822e-03	ci right 3.472891e-03	k: 8225	n:2420000
P2RX7   2420000 perm   2993 sec   (809 perm/sec)   p_kst 3.398760e-03   p_cons 1.476033e-03   p_joint 2.760331e-04

Joint ci ratio: 1.514219e-01	ci left: 2.548417e-04	ci right 2.969815e-04	k: 669	n:2430000
Cons ci ratio: 6.538503e-02	ci left: 1.428655e-03	ci right 1.525626e-03	k: 3588	n:2430000
KS ci ratio: 4.304259e-02	ci left: 3.328419e-03	ci right 3.475237e-03	k: 8265	n:2430000
P2RX7   2430000 perm   3015 sec   (806 perm/sec)   p_kst 3.401235e-03   p_cons 1.476543e-03   p_joint 2.753086e-04

Joint ci ratio: 1.559090e-01	ci left: 2.388220e-04	ci right 2.795925e-04	k: 631	n:2440000
Cons ci ratio: 6.525788e-02	ci left: 1.428444e-03	ci right 1.525205e-03	k: 3602	n:2440000
KS ci ratio: 4.293617e-02	ci left: 3.331401e-03	ci right 3.477978e-03	k: 8306	n:2440000
P2RX7   2440000 perm   3038 sec   (803 perm/sec)   p_kst 3.404098e-03   p_cons 1.476230e-03   p_joint 2.586066e-04

Joint ci ratio: 1.556629e-01	ci left: 2.386318e-04	ci right 2.792995e-04	k: 633	n:2450000
Cons ci ratio: 6.514049e-02	ci left: 1.427833e-03	ci right 1.524372e-03	k: 3615	n:2450000
KS ci ratio: 4.283827e-02	ci left: 3.333147e-03	ci right 3.479459e-03	k: 8344	n:2450000
P2RX7   2450000 perm   3061 sec   (800 perm/sec)   p_kst 3.405714e-03   p_cons 1.475510e-03   p_joint 2.583673e-04

Joint ci ratio: 1.554180e-01	ci left: 2.384431e-04	ci right 2.790087e-04	k: 635	n:2460000
Cons ci ratio: 6.498788e-02	ci left: 1.428827e-03	ci right 1.525198e-03	k: 3632	n:2460000
KS ci ratio: 4.277176e-02	ci left: 3.330054e-03	ci right 3.475997e-03	k: 8370	n:2460000
P2RX7   2460000 perm   3083 sec   (798 perm/sec)   p_kst 3.402439e-03   p_cons 1.476423e-03   p_joint 2.581301e-04

Joint ci ratio: 1.551742e-01	ci left: 2.382560e-04	ci right 2.787203e-04	k: 637	n:2470000
Cons ci ratio: 6.485413e-02	ci left: 1.429016e-03	ci right 1.525195e-03	k: 3647	n:2470000
KS ci ratio: 4.266225e-02	ci left: 3.333795e-03	ci right 3.479519e-03	k: 8413	n:2470000
P2RX7   2470000 perm   3106 sec   (795 perm/sec)   p_kst 3.406073e-03   p_cons 1.476518e-03   p_joint 2.578947e-04

Joint ci ratio: 1.550528e-01	ci left: 2.376828e-04	ci right 2.780153e-04	k: 638	n:2480000
Cons ci ratio: 6.476548e-02	ci left: 1.427221e-03	ci right 1.523143e-03	k: 3657	n:2480000
KS ci ratio: 4.260922e-02	ci left: 3.328729e-03	ci right 3.474047e-03	k: 8434	n:2480000
P2RX7   2480000 perm   3129 sec   (793 perm/sec)   p_kst 3.400806e-03   p_cons 1.474597e-03   p_joint 2.572581e-04

Joint ci ratio: 1.546901e-01	ci left: 2.378864e-04	ci right 2.781502e-04	k: 641	n:2490000
Cons ci ratio: 6.465073e-02	ci left: 1.426626e-03	ci right 1.522331e-03	k: 3670	n:2490000
KS ci ratio: 4.252361e-02	ci left: 3.328870e-03	ci right 3.473895e-03	k: 8468	n:2490000
P2RX7   2490000 perm   3152 sec   (790 perm/sec)   p_kst 3.400803e-03   p_cons 1.473896e-03   p_joint 2.574297e-04

Joint ci ratio: 1.546902e-01	ci left: 2.369349e-04	ci right 2.770377e-04	k: 641	n:2500000
Cons ci ratio: 6.451904e-02	ci left: 1.426822e-03	ci right 1.522339e-03	k: 3685	n:2500000
KS ci ratio: 4.243600e-02	ci left: 3.329406e-03	ci right 3.474148e-03	k: 8503	n:2500000
P2RX7   2500000 perm   3175 sec   (787 perm/sec)   p_kst 3.401200e-03   p_cons 1.474000e-03   p_joint 2.564000e-04

Joint ci ratio: 1.543300e-01	ci left: 2.371399e-04	ci right 2.771753e-04	k: 644	n:2510000
Cons ci ratio: 6.435334e-02	ci left: 1.428585e-03	ci right 1.523965e-03	k: 3704	n:2510000
KS ci ratio: 4.236138e-02	ci left: 3.327967e-03	ci right 3.472386e-03	k: 8533	n:2510000
P2RX7   2510000 perm   3199 sec   (785 perm/sec)   p_kst 3.399602e-03   p_cons 1.475697e-03   p_joint 2.565737e-04

Joint ci ratio: 1.537352e-01	ci left: 2.381065e-04	ci right 2.781359e-04	k: 649	n:2520000
Cons ci ratio: 6.424076e-02	ci left: 1.427992e-03	ci right 1.523159e-03	k: 3717	n:2520000
KS ci ratio: 4.226982e-02	ci left: 3.329288e-03	ci right 3.473444e-03	k: 8570	n:2520000
P2RX7   2520000 perm   3222 sec   (782 perm/sec)   p_kst 3.400794e-03   p_cons 1.475000e-03   p_joint 2.575397e-04

Joint ci ratio: 1.533816e-01	ci left: 2.383056e-04	ci right 2.782679e-04	k: 652	n:2530000
Cons ci ratio: 6.412016e-02	ci left: 1.427793e-03	ci right 1.522761e-03	k: 3731	n:2530000
KS ci ratio: 4.218869e-02	ci left: 3.329035e-03	ci right 3.472896e-03	k: 8603	n:2530000
P2RX7   2530000 perm   3245 sec   (780 perm/sec)   p_kst 3.400395e-03   p_cons 1.474704e-03   p_joint 2.577075e-04

Joint ci ratio: 1.527977e-01	ci left: 2.392605e-04	ci right 2.792162e-04	k: 657	n:2540000
Cons ci ratio: 6.394044e-02	ci left: 1.430307e-03	ci right 1.525166e-03	k: 3752	n:2540000
KS ci ratio: 4.213006e-02	ci left: 3.325277e-03	ci right 3.468772e-03	k: 8627	n:2540000
P2RX7   2540000 perm   3269 sec   (777 perm/sec)   p_kst 3.396457e-03   p_cons 1.477165e-03   p_joint 2.586614e-04

Joint ci ratio: 1.527978e-01	ci left: 2.383222e-04	ci right 2.781212e-04	k: 657	n:2550000
Cons ci ratio: 6.380456e-02	ci left: 1.430872e-03	ci right 1.525560e-03	k: 3768	n:2550000
KS ci ratio: 4.203269e-02	ci left: 3.327758e-03	ci right 3.471020e-03	k: 8667	n:2550000
P2RX7   2550000 perm   3293 sec   (774 perm/sec)   p_kst 3.398824e-03   p_cons 1.477647e-03   p_joint 2.576471e-04

Joint ci ratio: 1.526818e-01	ci left: 2.377670e-04	ci right 2.774404e-04	k: 658	n:2560000
Cons ci ratio: 6.372859e-02	ci left: 1.428742e-03	ci right 1.523172e-03	k: 3777	n:2560000
KS ci ratio: 4.194324e-02	ci left: 3.329061e-03	ci right 3.472066e-03	k: 8704	n:2560000
P2RX7   2560000 perm   3316 sec   (772 perm/sec)   p_kst 3.400000e-03   p_cons 1.475391e-03   p_joint 2.570312e-04

Joint ci ratio: 1.523355e-01	ci left: 2.379646e-04	ci right 2.775727e-04	k: 661	n:2570000
Cons ci ratio: 6.364447e-02	ci left: 1.427012e-03	ci right 1.521199e-03	k: 3787	n:2570000
KS ci ratio: 4.185196e-02	ci left: 3.330738e-03	ci right 3.473497e-03	k: 8742	n:2570000
P2RX7   2570000 perm   3340 sec   (770 perm/sec)   p_kst 3.401556e-03   p_cons 1.473541e-03   p_joint 2.571984e-04

Joint ci ratio: 1.518773e-01	ci left: 2.385336e-04	ci right 2.781061e-04	k: 665	n:2580000
Cons ci ratio: 6.349376e-02	ci left: 1.428347e-03	ci right 1.522390e-03	k: 3805	n:2580000
KS ci ratio: 4.176843e-02	ci left: 3.331252e-03	ci right 3.473742e-03	k: 8777	n:2580000
P2RX7   2580000 perm   3363 sec   (767 perm/sec)   p_kst 3.401938e-03   p_cons 1.474806e-03   p_joint 2.577519e-04

Joint ci ratio: 1.516498e-01	ci left: 2.383555e-04	ci right 2.778339e-04	k: 667	n:2590000
Cons ci ratio: 6.330267e-02	ci left: 1.431572e-03	ci right 1.525533e-03	k: 3828	n:2590000
KS ci ratio: 4.172580e-02	ci left: 3.325268e-03	ci right 3.467352e-03	k: 8795	n:2590000
P2RX7   2590000 perm   3387 sec   (765 perm/sec)   p_kst 3.395753e-03   p_cons 1.477992e-03   p_joint 2.575290e-04

Joint ci ratio: 1.514233e-01	ci left: 2.381788e-04	ci right 2.775637e-04	k: 669	n:2600000
Cons ci ratio: 6.315436e-02	ci left: 1.432879e-03	ci right 1.526698e-03	k: 3846	n:2600000
KS ci ratio: 4.165012e-02	ci left: 3.324657e-03	ci right 3.466452e-03	k: 8827	n:2600000
P2RX7   2600000 perm   3410 sec   (762 perm/sec)   p_kst 3.395000e-03   p_cons 1.479231e-03   p_joint 2.573077e-04

Joint ci ratio: 1.511978e-01	ci left: 2.380035e-04	ci right 2.772955e-04	k: 671	n:2610000
Cons ci ratio: 6.302342e-02	ci left: 1.433423e-03	ci right 1.527076e-03	k: 3862	n:2610000
KS ci ratio: 4.157015e-02	ci left: 3.324811e-03	ci right 3.466333e-03	k: 8861	n:2610000
P2RX7   2610000 perm   3434 sec   (760 perm/sec)   p_kst 3.395019e-03   p_cons 1.479693e-03   p_joint 2.570881e-04

Joint ci ratio: 1.511979e-01	ci left: 2.370951e-04	ci right 2.762371e-04	k: 671	n:2620000
Cons ci ratio: 6.288518e-02	ci left: 1.434338e-03	ci right 1.527838e-03	k: 3879	n:2620000
KS ci ratio: 4.151171e-02	ci left: 3.321563e-03	ci right 3.462744e-03	k: 8886	n:2620000
P2RX7   2620000 perm   3459 sec   (758 perm/sec)   p_kst 3.391603e-03   p_cons 1.480534e-03   p_joint 2.561069e-04

Joint ci ratio: 1.506384e-01	ci left: 2.380230e-04	ci right 2.771596e-04	k: 676	n:2630000
Cons ci ratio: 6.275591e-02	ci left: 1.434873e-03	ci right 1.528208e-03	k: 3895	n:2630000
KS ci ratio: 4.144651e-02	ci left: 3.319470e-03	ci right 3.460335e-03	k: 8914	n:2630000
P2RX7   2630000 perm   3483 sec   (755 perm/sec)   p_kst 3.389354e-03   p_cons 1.480989e-03   p_joint 2.570342e-04

Joint ci ratio: 1.504164e-01	ci left: 2.378504e-04	ci right 2.768959e-04	k: 678	n:2640000
Cons ci ratio: 6.261140e-02	ci left: 1.436149e-03	ci right 1.529344e-03	k: 3913	n:2640000
KS ci ratio: 4.136075e-02	ci left: 3.320766e-03	ci right 3.461387e-03	k: 8951	n:2640000
P2RX7   2640000 perm   3507 sec   (753 perm/sec)   p_kst 3.390530e-03   p_cons 1.482197e-03   p_joint 2.568182e-04

Joint ci ratio: 1.501954e-01	ci left: 2.376792e-04	ci right 2.766341e-04	k: 680	n:2650000
Cons ci ratio: 6.248380e-02	ci left: 1.436673e-03	ci right 1.529705e-03	k: 3929	n:2650000
KS ci ratio: 4.127090e-02	ci left: 3.322800e-03	ci right 3.463194e-03	k: 8990	n:2650000
P2RX7   2650000 perm   3532 sec   (750 perm/sec)   p_kst 3.392453e-03   p_cons 1.482642e-03   p_joint 2.566038e-04

Joint ci ratio: 1.496470e-01	ci left: 2.385949e-04	ci right 2.775442e-04	k: 685	n:2660000
Cons ci ratio: 6.240451e-02	ci left: 1.434972e-03	ci right 1.527772e-03	k: 3939	n:2660000
KS ci ratio: 4.119996e-02	ci left: 3.321842e-03	ci right 3.461949e-03	k: 9021	n:2660000
P2RX7   2660000 perm   3556 sec   (748 perm/sec)   p_kst 3.391353e-03   p_cons 1.480827e-03   p_joint 2.575188e-04

Joint ci ratio: 1.493208e-01	ci left: 2.387828e-04	ci right 2.776703e-04	k: 688	n:2670000
Cons ci ratio: 6.229395e-02	ci left: 1.434760e-03	ci right 1.527376e-03	k: 3953	n:2670000
KS ci ratio: 4.111116e-02	ci left: 3.323857e-03	ci right 3.463740e-03	k: 9060	n:2670000
P2RX7   2670000 perm   3582 sec   (745 perm/sec)   p_kst 3.393258e-03   p_cons 1.480524e-03   p_joint 2.576779e-04

Joint ci ratio: 1.493209e-01	ci left: 2.378918e-04	ci right 2.766343e-04	k: 688	n:2680000
Cons ci ratio: 6.216044e-02	ci left: 1.435651e-03	ci right 1.528118e-03	k: 3970	n:2680000
KS ci ratio: 4.105690e-02	ci left: 3.320318e-03	ci right 3.459863e-03	k: 9084	n:2680000
P2RX7   2680000 perm   3607 sec   (743 perm/sec)   p_kst 3.389552e-03   p_cons 1.481343e-03   p_joint 2.567164e-04

Joint ci ratio: 1.491046e-01	ci left: 2.377232e-04	ci right 2.763771e-04	k: 690	n:2690000
Cons ci ratio: 6.205116e-02	ci left: 1.435437e-03	ci right 1.527723e-03	k: 3984	n:2690000
KS ci ratio: 4.097578e-02	ci left: 3.321220e-03	ci right 3.460521e-03	k: 9120	n:2690000
P2RX7   2690000 perm   3632 sec   (741 perm/sec)   p_kst 3.390335e-03   p_cons 1.481041e-03   p_joint 2.565056e-04

Joint ci ratio: 1.485680e-01	ci left: 2.386257e-04	ci right 2.772743e-04	k: 695	n:2700000
Cons ci ratio: 6.191146e-02	ci left: 1.436684e-03	ci right 1.528835e-03	k: 4002	n:2700000
KS ci ratio: 4.089514e-02	ci left: 3.322116e-03	ci right 3.461174e-03	k: 9156	n:2700000
P2RX7   2700000 perm   3657 sec   (738 perm/sec)   p_kst 3.391111e-03   p_cons 1.482222e-03   p_joint 2.574074e-04

Joint ci ratio: 1.485681e-01	ci left: 2.377451e-04	ci right 2.762511e-04	k: 695	n:2710000
Cons ci ratio: 6.186521e-02	ci left: 1.433563e-03	ci right 1.525442e-03	k: 4008	n:2710000
KS ci ratio: 4.080606e-02	ci left: 3.324467e-03	ci right 3.463313e-03	k: 9196	n:2710000
P2RX7   2710000 perm   3682 sec   (736 perm/sec)   p_kst 3.393358e-03   p_cons 1.478967e-03   p_joint 2.564576e-04

Joint ci ratio: 1.484615e-01	ci left: 2.372250e-04	ci right 2.756168e-04	k: 696	n:2720000
Cons ci ratio: 6.176517e-02	ci left: 1.432998e-03	ci right 1.524687e-03	k: 4021	n:2720000
KS ci ratio: 4.074635e-02	ci left: 3.322070e-03	ci right 3.460608e-03	k: 9223	n:2720000
P2RX7   2720000 perm   3707 sec   (734 perm/sec)   p_kst 3.390809e-03   p_cons 1.478309e-03   p_joint 2.558824e-04

Joint ci ratio: 1.480373e-01	ci left: 2.377669e-04	ci right 2.761267e-04	k: 700	n:2730000
Cons ci ratio: 6.165796e-02	ci left: 1.432798e-03	ci right 1.524309e-03	k: 4035	n:2730000
KS ci ratio: 4.065824e-02	ci left: 3.324404e-03	ci right 3.462733e-03	k: 9263	n:2730000
P2RX7   2730000 perm   3731 sec   (732 perm/sec)   p_kst 3.393040e-03   p_cons 1.478022e-03   p_joint 2.564103e-04

Joint ci ratio: 1.506392e-01	ci left: 2.284672e-04	ci right 2.660329e-04	k: 676	n:2740000
Cons ci ratio: 6.157415e-02	ci left: 1.431521e-03	ci right 1.522822e-03	k: 4046	n:2740000
KS ci ratio: 4.057508e-02	ci left: 3.325999e-03	ci right 3.464105e-03	k: 9301	n:2740000
P2RX7   2740000 perm   3758 sec   (729 perm/sec)   p_kst 3.394526e-03   p_cons 1.476642e-03   p_joint 2.467153e-04

Joint ci ratio: 1.505281e-01	ci left: 2.279864e-04	ci right 2.654428e-04	k: 677	n:2750000
Cons ci ratio: 6.147551e-02	ci left: 1.430970e-03	ci right 1.522085e-03	k: 4059	n:2750000
KS ci ratio: 4.051855e-02	ci left: 3.323263e-03	ci right 3.461058e-03	k: 9327	n:2750000
P2RX7   2750000 perm   3783 sec   (727 perm/sec)   p_kst 3.391636e-03   p_cons 1.476000e-03   p_joint 2.461818e-04

Joint ci ratio: 1.504173e-01	ci left: 2.275090e-04	ci right 2.648570e-04	k: 678	n:2760000
Cons ci ratio: 6.137734e-02	ci left: 1.430423e-03	ci right 1.521352e-03	k: 4072	n:2760000
KS ci ratio: 4.045141e-02	ci left: 3.322341e-03	ci right 3.459864e-03	k: 9358	n:2760000
P2RX7   2760000 perm   3809 sec   (725 perm/sec)   p_kst 3.390580e-03   p_cons 1.475362e-03   p_joint 2.456522e-04

Joint ci ratio: 1.503067e-01	ci left: 2.270351e-04	ci right 2.642755e-04	k: 679	n:2770000
Cons ci ratio: 6.131723e-02	ci left: 1.428103e-03	ci right 1.518793e-03	k: 4080	n:2770000
KS ci ratio: 4.038460e-02	ci left: 3.321425e-03	ci right 3.458678e-03	k: 9389	n:2770000
P2RX7   2770000 perm   3835 sec   (722 perm/sec)   p_kst 3.389531e-03   p_cons 1.472924e-03   p_joint 2.451264e-04

Joint ci ratio: 1.497570e-01	ci left: 2.279495e-04	ci right 2.651909e-04	k: 684	n:2780000
Cons ci ratio: 6.116747e-02	ci left: 1.430050e-03	ci right 1.520634e-03	k: 4100	n:2780000
KS ci ratio: 4.030525e-02	ci left: 3.322652e-03	ci right 3.459680e-03	k: 9426	n:2780000
P2RX7   2780000 perm   3860 sec   (720 perm/sec)   p_kst 3.390647e-03   p_cons 1.474820e-03   p_joint 2.460432e-04

Joint ci ratio: 1.495389e-01	ci left: 2.278225e-04	ci right 2.649840e-04	k: 686	n:2790000
Cons ci ratio: 6.105591e-02	ci left: 1.430219e-03	ci right 1.520642e-03	k: 4115	n:2790000
KS ci ratio: 4.021145e-02	ci left: 3.326355e-03	ci right 3.463209e-03	k: 9470	n:2790000
P2RX7   2790000 perm   3885 sec   (718 perm/sec)   p_kst 3.394265e-03   p_cons 1.474910e-03   p_joint 2.458781e-04

Joint ci ratio: 1.495390e-01	ci left: 2.270088e-04	ci right 2.640377e-04	k: 686	n:2800000
Cons ci ratio: 6.098193e-02	ci left: 1.428628e-03	ci right 1.518837e-03	k: 4125	n:2800000
KS ci ratio: 4.015218e-02	ci left: 3.324375e-03	ci right 3.460941e-03	k: 9498	n:2800000
P2RX7   2800000 perm   3911 sec   (716 perm/sec)   p_kst 3.392143e-03   p_cons 1.473214e-03   p_joint 2.450000e-04

Joint ci ratio: 1.494303e-01	ci left: 2.265435e-04	ci right 2.634672e-04	k: 687	n:2810000
Cons ci ratio: 6.089347e-02	ci left: 1.427749e-03	ci right 1.517767e-03	k: 4137	n:2810000
KS ci ratio: 4.008262e-02	ci left: 3.324170e-03	ci right 3.460486e-03	k: 9531	n:2810000
P2RX7   2810000 perm   3937 sec   (714 perm/sec)   p_kst 3.391815e-03   p_cons 1.472242e-03   p_joint 2.444840e-04

Joint ci ratio: 1.493218e-01	ci left: 2.260815e-04	ci right 2.629008e-04	k: 688	n:2820000
Cons ci ratio: 6.076143e-02	ci left: 1.428972e-03	ci right 1.518865e-03	k: 4155	n:2820000
KS ci ratio: 4.000713e-02	ci left: 3.325021e-03	ci right 3.461109e-03	k: 9567	n:2820000
P2RX7   2820000 perm   3962 sec   (712 perm/sec)   p_kst 3.392553e-03   p_cons 1.473404e-03   p_joint 2.439716e-04

Joint ci ratio: 1.488902e-01	ci left: 2.266433e-04	ci right 2.634379e-04	k: 692	n:2830000
Cons ci ratio: 6.068851e-02	ci left: 1.427402e-03	ci right 1.517086e-03	k: 4165	n:2830000
KS ci ratio: 3.990497e-02	ci left: 3.330413e-03	ci right 3.466366e-03	k: 9616	n:2830000
P2RX7   2830000 perm   3988 sec   (710 perm/sec)   p_kst 3.397880e-03   p_cons 1.471731e-03   p_joint 2.445230e-04

Joint ci ratio: 1.485690e-01	ci left: 2.268623e-04	ci right 2.636059e-04	k: 695	n:2840000
Cons ci ratio: 6.057229e-02	ci left: 1.427925e-03	ci right 1.517463e-03	k: 4181	n:2840000
KS ci ratio: 3.982841e-02	ci left: 3.331585e-03	ci right 3.467318e-03	k: 9653	n:2840000
P2RX7   2840000 perm   4014 sec   (707 perm/sec)   p_kst 3.398944e-03   p_cons 1.472183e-03   p_joint 2.447183e-04

Joint ci ratio: 1.484624e-01	ci left: 2.264041e-04	ci right 2.630449e-04	k: 696	n:2850000
Cons ci ratio: 6.047838e-02	ci left: 1.427407e-03	ci right 1.516769e-03	k: 4194	n:2850000
KS ci ratio: 3.976464e-02	ci left: 3.330664e-03	ci right 3.466138e-03	k: 9684	n:2850000
P2RX7   2850000 perm   4040 sec   (705 perm/sec)   p_kst 3.397895e-03   p_cons 1.471579e-03   p_joint 2.442105e-04

Joint ci ratio: 1.480382e-01	ci left: 2.269592e-04	ci right 2.635756e-04	k: 700	n:2860000
Cons ci ratio: 6.041367e-02	ci left: 1.425515e-03	ci right 1.514660e-03	k: 4203	n:2860000
KS ci ratio: 3.971142e-02	ci left: 3.328019e-03	ci right 3.463200e-03	k: 9710	n:2860000
P2RX7   2860000 perm   4066 sec   (703 perm/sec)   p_kst 3.395105e-03   p_cons 1.469580e-03   p_joint 2.447552e-04

Joint ci ratio: 1.479327e-01	ci left: 2.265040e-04	ci right 2.630186e-04	k: 701	n:2870000
Cons ci ratio: 6.027756e-02	ci left: 1.427069e-03	ci right 1.516102e-03	k: 4222	n:2870000
KS ci ratio: 3.964209e-02	ci left: 3.328152e-03	ci right 3.463097e-03	k: 9744	n:2870000
P2RX7   2870000 perm   4092 sec   (701 perm/sec)   p_kst 3.395122e-03   p_cons 1.471080e-03   p_joint 2.442509e-04

Joint ci ratio: 1.477225e-01	ci left: 2.263863e-04	ci right 2.628254e-04	k: 703	n:2880000
Cons ci ratio: 6.019925e-02	ci left: 1.425875e-03	ci right 1.514715e-03	k: 4233	n:2880000
KS ci ratio: 3.957717e-02	ci left: 3.327597e-03	ci right 3.462293e-03	k: 9776	n:2880000
P2RX7   2880000 perm   4118 sec   (699 perm/sec)   p_kst 3.394444e-03   p_cons 1.469792e-03   p_joint 2.440972e-04

Joint ci ratio: 1.503074e-01	ci left: 2.176080e-04	ci right 2.533022e-04	k: 679	n:2890000
Cons ci ratio: 6.009290e-02	ci left: 1.426054e-03	ci right 1.514742e-03	k: 4248	n:2890000
KS ci ratio: 3.948431e-02	ci left: 3.331843e-03	ci right 3.466387e-03	k: 9822	n:2890000
P2RX7   2890000 perm   4145 sec   (697 perm/sec)   p_kst 3.398616e-03   p_cons 1.469896e-03   p_joint 2.349481e-04

Joint ci ratio: 1.499769e-01	ci left: 2.178532e-04	ci right 2.535021e-04	k: 682	n:2900000
Cons ci ratio: 5.995894e-02	ci left: 1.427590e-03	ci right 1.516169e-03	k: 4267	n:2900000
KS ci ratio: 3.940813e-02	ci left: 3.333328e-03	ci right 3.467667e-03	k: 9860	n:2900000
P2RX7   2900000 perm   4171 sec   (695 perm/sec)   p_kst 3.400000e-03   p_cons 1.471379e-03   p_joint 2.351724e-04

Joint ci ratio: 1.497578e-01	ci left: 2.177661e-04	ci right 2.533440e-04	k: 684	n:2910000
Cons ci ratio: 5.984686e-02	ci left: 1.428100e-03	ci right 1.516539e-03	k: 4283	n:2910000
KS ci ratio: 3.934436e-02	ci left: 3.332761e-03	ci right 3.466855e-03	k: 9892	n:2910000
P2RX7   2910000 perm   4198 sec   (693 perm/sec)   p_kst 3.399313e-03   p_cons 1.471821e-03   p_joint 2.350515e-04

Joint ci ratio: 1.492142e-01	ci left: 2.186686e-04	ci right 2.542527e-04	k: 689	n:2920000
Cons ci ratio: 5.974931e-02	ci left: 1.427932e-03	ci right 1.516212e-03	k: 4297	n:2920000
KS ci ratio: 3.928884e-02	ci left: 3.330843e-03	ci right 3.464666e-03	k: 9920	n:2920000
P2RX7   2920000 perm   4224 sec   (691 perm/sec)   p_kst 3.397260e-03   p_cons 1.471575e-03   p_joint 2.359589e-04

Joint ci ratio: 1.489984e-01	ci left: 2.185794e-04	ci right 2.540929e-04	k: 691	n:2930000
Cons ci ratio: 5.965918e-02	ci left: 1.427429e-03	ci right 1.515540e-03	k: 4310	n:2930000
KS ci ratio: 3.920984e-02	ci left: 3.332992e-03	ci right 3.466627e-03	k: 9960	n:2930000
P2RX7   2930000 perm   4251 sec   (689 perm/sec)   p_kst 3.399317e-03   p_cons 1.470990e-03   p_joint 2.358362e-04

Joint ci ratio: 1.486765e-01	ci left: 2.188184e-04	ci right 2.542871e-04	k: 694	n:2940000
Cons ci ratio: 5.954187e-02	ci left: 1.428270e-03	ci right 1.516254e-03	k: 4327	n:2940000
KS ci ratio: 3.915292e-02	ci left: 3.331423e-03	ci right 3.464796e-03	k: 9989	n:2940000
P2RX7   2940000 perm   4278 sec   (687 perm/sec)   p_kst 3.397619e-03   p_cons 1.471769e-03   p_joint 2.360544e-04

Joint ci ratio: 1.484630e-01	ci left: 2.187294e-04	ci right 2.541282e-04	k: 696	n:2950000
Cons ci ratio: 5.940472e-02	ci left: 1.430107e-03	ci right 1.517994e-03	k: 4347	n:2950000
KS ci ratio: 3.909429e-02	ci left: 3.330200e-03	ci right 3.463320e-03	k: 10019	n:2950000
P2RX7   2950000 perm   4305 sec   (685 perm/sec)   p_kst 3.396271e-03   p_cons 1.473559e-03   p_joint 2.359322e-04

Joint ci ratio: 1.484631e-01	ci left: 2.179904e-04	ci right 2.532697e-04	k: 696	n:2960000
Cons ci ratio: 5.932294e-02	ci left: 1.429270e-03	ci right 1.516980e-03	k: 4359	n:2960000
KS ci ratio: 3.902229e-02	ci left: 3.331327e-03	ci right 3.464242e-03	k: 10056	n:2960000
P2RX7   2960000 perm   4331 sec   (683 perm/sec)   p_kst 3.397297e-03   p_cons 1.472635e-03   p_joint 2.351351e-04

Joint ci ratio: 1.485698e-01	ci left: 2.169322e-04	ci right 2.520677e-04	k: 695	n:2970000
Cons ci ratio: 5.922115e-02	ci left: 1.429433e-03	ci right 1.516998e-03	k: 4374	n:2970000
KS ci ratio: 3.897782e-02	ci left: 3.327779e-03	ci right 3.460397e-03	k: 10079	n:2970000
P2RX7   2970000 perm   4358 sec   (681 perm/sec)   p_kst 3.393603e-03   p_cons 1.472727e-03   p_joint 2.340067e-04

Joint ci ratio: 1.483568e-01	ci left: 2.168505e-04	ci right 2.519179e-04	k: 697	n:2980000
Cons ci ratio: 5.904585e-02	ci left: 1.433232e-03	ci right 1.520761e-03	k: 4400	n:2980000
KS ci ratio: 3.891611e-02	ci left: 3.327246e-03	ci right 3.459628e-03	k: 10111	n:2980000
P2RX7   2980000 perm   4386 sec   (679 perm/sec)   p_kst 3.392953e-03   p_cons 1.476510e-03   p_joint 2.338926e-04

Joint ci ratio: 1.482507e-01	ci left: 2.164473e-04	ci right 2.514222e-04	k: 698	n:2990000
Cons ci ratio: 5.897893e-02	ci left: 1.431734e-03	ci right 1.519069e-03	k: 4410	n:2990000
KS ci ratio: 3.884508e-02	ci left: 3.328372e-03	ci right 3.460552e-03	k: 10148	n:2990000
P2RX7   2990000 perm   4413 sec   (678 perm/sec)   p_kst 3.393980e-03   p_cons 1.474916e-03   p_joint 2.334448e-04

Joint ci ratio: 1.482507e-01	ci left: 2.157258e-04	ci right 2.505842e-04	k: 698	n:3000000
Cons ci ratio: 5.893894e-02	ci left: 1.428932e-03	ci right 1.516035e-03	k: 4416	n:3000000
KS ci ratio: 3.878591e-02	ci left: 3.327511e-03	ci right 3.459451e-03	k: 10179	n:3000000
P2RX7   3000000 perm   4440 sec   (676 perm/sec)   p_kst 3.393000e-03   p_cons 1.472000e-03   p_joint 2.326667e-04

Joint ci ratio: 1.478283e-01	ci left: 2.162888e-04	ci right 2.511298e-04	k: 702	n:3010000
Cons ci ratio: 5.885907e-02	ci left: 1.428113e-03	ci right 1.515044e-03	k: 4428	n:3010000
KS ci ratio: 3.871750e-02	ci left: 3.328300e-03	ci right 3.460034e-03	k: 10215	n:3010000
P2RX7   3010000 perm   4468 sec   (674 perm/sec)   p_kst 3.393688e-03   p_cons 1.471096e-03   p_joint 2.332226e-04

Joint ci ratio: 1.476185e-01	ci left: 2.162103e-04	ci right 2.509849e-04	k: 704	n:3020000
Cons ci ratio: 5.876627e-02	ci left: 1.427951e-03	ci right 1.514731e-03	k: 4442	n:3020000
KS ci ratio: 3.866080e-02	ci left: 3.327117e-03	ci right 3.458606e-03	k: 10245	n:3020000
P2RX7   3020000 perm   4495 sec   (672 perm/sec)   p_kst 3.392384e-03   p_cons 1.470861e-03   p_joint 2.331126e-04

Joint ci ratio: 1.473054e-01	ci left: 2.164503e-04	ci right 2.511832e-04	k: 707	n:3030000
Cons ci ratio: 5.865414e-02	ci left: 1.428767e-03	ci right 1.515425e-03	k: 4459	n:3030000
KS ci ratio: 3.857799e-02	ci left: 3.330518e-03	ci right 3.461853e-03	k: 10289	n:3030000
P2RX7   3030000 perm   4523 sec   (670 perm/sec)   p_kst 3.395710e-03   p_cons 1.471617e-03   p_joint 2.333333e-04

Joint ci ratio: 1.379722e-01	ci left: 2.471435e-04	ci right 2.840826e-04	k: 806	n:3040000
Cons ci ratio: 5.856886e-02	ci left: 1.428281e-03	ci right 1.514779e-03	k: 4472	n:3040000
KS ci ratio: 3.852752e-02	ci left: 3.328358e-03	ci right 3.459433e-03	k: 10316	n:3040000
P2RX7   3040000 perm   4550 sec   (668 perm/sec)   p_kst 3.393421e-03   p_cons 1.471053e-03   p_joint 2.651316e-04

Joint ci ratio: 1.382295e-01	ci left: 2.453835e-04	ci right 2.821336e-04	k: 803	n:3050000
Cons ci ratio: 5.845786e-02	ci left: 1.429090e-03	ci right 1.515467e-03	k: 4489	n:3050000
KS ci ratio: 3.847725e-02	ci left: 3.326212e-03	ci right 3.457028e-03	k: 10343	n:3050000
P2RX7   3050000 perm   4578 sec   (666 perm/sec)   p_kst 3.391148e-03   p_cons 1.471803e-03   p_joint 2.632787e-04

Joint ci ratio: 1.382296e-01	ci left: 2.445816e-04	ci right 2.812116e-04	k: 803	n:3060000
Cons ci ratio: 5.832157e-02	ci left: 1.431182e-03	ci right 1.517478e-03	k: 4510	n:3060000
KS ci ratio: 3.841417e-02	ci left: 3.326347e-03	ci right 3.456949e-03	k: 10377	n:3060000
P2RX7   3060000 perm   4607 sec   (664 perm/sec)   p_kst 3.391176e-03   p_cons 1.473856e-03   p_joint 2.624183e-04

Joint ci ratio: 1.378869e-01	ci left: 2.450428e-04	ci right 2.816435e-04	k: 807	n:3070000
Cons ci ratio: 5.823129e-02	ci left: 1.431014e-03	ci right 1.517162e-03	k: 4524	n:3070000
KS ci ratio: 3.833109e-02	ci left: 3.330029e-03	ci right 3.460487e-03	k: 10422	n:3070000
P2RX7   3070000 perm   4635 sec   (662 perm/sec)   p_kst 3.394788e-03   p_cons 1.473616e-03   p_joint 2.628664e-04

Joint ci ratio: 1.377166e-01	ci left: 2.448742e-04	ci right 2.814008e-04	k: 809	n:3080000
Cons ci ratio: 5.812219e-02	ci left: 1.431807e-03	ci right 1.517836e-03	k: 4541	n:3080000
KS ci ratio: 3.827423e-02	ci left: 3.329186e-03	ci right 3.459413e-03	k: 10453	n:3080000
P2RX7   3080000 perm   4663 sec   (661 perm/sec)   p_kst 3.393831e-03   p_cons 1.474351e-03   p_joint 2.626623e-04

Joint ci ratio: 1.375469e-01	ci left: 2.447067e-04	ci right 2.811596e-04	k: 811	n:3090000
Cons ci ratio: 5.808392e-02	ci left: 1.429087e-03	ci right 1.514893e-03	k: 4547	n:3090000
KS ci ratio: 3.821945e-02	ci left: 3.328028e-03	ci right 3.458019e-03	k: 10483	n:3090000
P2RX7   3090000 perm   4691 sec   (659 perm/sec)   p_kst 3.392557e-03   p_cons 1.471521e-03   p_joint 2.624595e-04

Joint ci ratio: 1.374624e-01	ci left: 2.442288e-04	ci right 2.805863e-04	k: 812	n:3100000
Cons ci ratio: 5.799473e-02	ci left: 1.428928e-03	ci right 1.514588e-03	k: 4561	n:3100000
KS ci ratio: 3.816856e-02	ci left: 3.326238e-03	ci right 3.455983e-03	k: 10511	n:3100000
P2RX7   3100000 perm   4719 sec   (657 perm/sec)   p_kst 3.390645e-03   p_cons 1.471290e-03   p_joint 2.619355e-04

Joint ci ratio: 1.374624e-01	ci left: 2.434435e-04	ci right 2.796842e-04	k: 812	n:3110000
Cons ci ratio: 5.792498e-02	ci left: 1.427819e-03	ci right 1.513307e-03	k: 4572	n:3110000
KS ci ratio: 3.811423e-02	ci left: 3.325097e-03	ci right 3.454608e-03	k: 10541	n:3110000
P2RX7   3110000 perm   4747 sec   (655 perm/sec)   p_kst 3.389389e-03   p_cons 1.470096e-03   p_joint 2.610932e-04

Joint ci ratio: 1.373780e-01	ci left: 2.429727e-04	ci right 2.791193e-04	k: 813	n:3120000
Cons ci ratio: 5.784283e-02	ci left: 1.427349e-03	ci right 1.512683e-03	k: 4585	n:3120000
KS ci ratio: 3.806375e-02	ci left: 3.323329e-03	ci right 3.452596e-03	k: 10569	n:3120000
P2RX7   3120000 perm   4776 sec   (653 perm/sec)   p_kst 3.387500e-03   p_cons 1.469551e-03   p_joint 2.605769e-04

Joint ci ratio: 1.372095e-01	ci left: 2.428135e-04	ci right 2.788884e-04	k: 815	n:3130000
Cons ci ratio: 5.777362e-02	ci left: 1.426252e-03	ci right 1.511416e-03	k: 4596	n:3130000
KS ci ratio: 3.799190e-02	ci left: 3.325369e-03	ci right 3.454466e-03	k: 10609	n:3130000
P2RX7   3130000 perm   4804 sec   (651 perm/sec)   p_kst 3.389457e-03   p_cons 1.468371e-03   p_joint 2.603834e-04

Joint ci ratio: 1.369580e-01	ci left: 2.429628e-04	ci right 2.789884e-04	k: 818	n:3140000
Cons ci ratio: 5.766081e-02	ci left: 1.427360e-03	ci right 1.512417e-03	k: 4614	n:3140000
KS ci ratio: 3.792402e-02	ci left: 3.326766e-03	ci right 3.455681e-03	k: 10647	n:3140000
P2RX7   3140000 perm   4833 sec   (650 perm/sec)   p_kst 3.390764e-03   p_cons 1.469427e-03   p_joint 2.605096e-04

Joint ci ratio: 1.367911e-01	ci left: 2.428047e-04	ci right 2.787594e-04	k: 820	n:3150000
Cons ci ratio: 5.756733e-02	ci left: 1.427522e-03	ci right 1.512446e-03	k: 4629	n:3150000
KS ci ratio: 3.786717e-02	ci left: 3.326267e-03	ci right 3.454966e-03	k: 10679	n:3150000
P2RX7   3150000 perm   4863 sec   (648 perm/sec)   p_kst 3.390159e-03   p_cons 1.469524e-03   p_joint 2.603175e-04

Joint ci ratio: 1.364590e-01	ci left: 2.432589e-04	ci right 2.791863e-04	k: 824	n:3160000
Cons ci ratio: 5.748050e-02	ci left: 1.427371e-03	ci right 1.512154e-03	k: 4643	n:3160000
KS ci ratio: 3.779819e-02	ci left: 3.327966e-03	ci right 3.456491e-03	k: 10718	n:3160000
P2RX7   3160000 perm   4891 sec   (646 perm/sec)   p_kst 3.391772e-03   p_cons 1.469304e-03   p_joint 2.607595e-04

Joint ci ratio: 1.376322e-01	ci left: 2.382265e-04	ci right 2.737379e-04	k: 810	n:3170000
Cons ci ratio: 5.740640e-02	ci left: 1.426599e-03	ci right 1.511224e-03	k: 4655	n:3170000
KS ci ratio: 3.772431e-02	ci left: 3.330592e-03	ci right 3.458961e-03	k: 10760	n:3170000
P2RX7   3170000 perm   4920 sec   (644 perm/sec)   p_kst 3.394322e-03   p_cons 1.468454e-03   p_joint 2.555205e-04

Joint ci ratio: 1.376322e-01	ci left: 2.374773e-04	ci right 2.728771e-04	k: 810	n:3180000
Cons ci ratio: 5.734490e-02	ci left: 1.425213e-03	ci right 1.509661e-03	k: 4665	n:3180000
KS ci ratio: 3.766135e-02	ci left: 3.331332e-03	ci right 3.459512e-03	k: 10796	n:3180000
P2RX7   3180000 perm   4948 sec   (643 perm/sec)   p_kst 3.394969e-03   p_cons 1.466981e-03   p_joint 2.547170e-04

Joint ci ratio: 1.374629e-01	ci left: 2.373383e-04	ci right 2.726702e-04	k: 812	n:3190000
Cons ci ratio: 5.726519e-02	ci left: 1.424762e-03	ci right 1.509063e-03	k: 4678	n:3190000
KS ci ratio: 3.759175e-02	ci left: 3.333311e-03	ci right 3.461324e-03	k: 10836	n:3190000
P2RX7   3190000 perm   4977 sec   (641 perm/sec)   p_kst 3.396865e-03   p_cons 1.466458e-03   p_joint 2.545455e-04

Joint ci ratio: 1.407027e-01	ci left: 2.254363e-04	ci right 2.598537e-04	k: 775	n:3200000
Cons ci ratio: 5.719193e-02	ci left: 1.424006e-03	ci right 1.508150e-03	k: 4690	n:3200000
KS ci ratio: 3.752772e-02	ci left: 3.334348e-03	ci right 3.462178e-03	k: 10873	n:3200000
P2RX7   3200000 perm   5006 sec   (639 perm/sec)   p_kst 3.397812e-03   p_cons 1.465625e-03   p_joint 2.421875e-04

Joint ci ratio: 1.406122e-01	ci left: 2.250345e-04	ci right 2.593667e-04	k: 776	n:3210000
Cons ci ratio: 5.710070e-02	ci left: 1.424176e-03	ci right 1.508192e-03	k: 4705	n:3210000
KS ci ratio: 3.746230e-02	ci left: 3.335688e-03	ci right 3.463341e-03	k: 10911	n:3210000
P2RX7   3210000 perm   5036 sec   (637 perm/sec)   p_kst 3.399065e-03   p_cons 1.465732e-03   p_joint 2.417445e-04

Joint ci ratio: 1.438911e-01	ci left: 2.138528e-04	ci right 2.473052e-04	k: 741	n:3220000
Cons ci ratio: 5.700387e-02	ci left: 1.424651e-03	ci right 1.508548e-03	k: 4721	n:3220000
KS ci ratio: 3.738694e-02	ci left: 3.338865e-03	ci right 3.466378e-03	k: 10955	n:3220000
P2RX7   3220000 perm   5065 sec   (636 perm/sec)   p_kst 3.402174e-03   p_cons 1.466149e-03   p_joint 2.301242e-04

Joint ci ratio: 1.438912e-01	ci left: 2.131907e-04	ci right 2.465395e-04	k: 741	n:3230000
Cons ci ratio: 5.694365e-02	ci left: 1.423292e-03	ci right 1.507018e-03	k: 4731	n:3230000
KS ci ratio: 3.733588e-02	ci left: 3.337729e-03	ci right 3.465021e-03	k: 10985	n:3230000
P2RX7   3230000 perm   5095 sec   (634 perm/sec)   p_kst 3.400929e-03   p_cons 1.464706e-03   p_joint 2.294118e-04

Joint ci ratio: 1.437943e-01	ci left: 2.128303e-04	ci right 2.460984e-04	k: 742	n:3240000
Cons ci ratio: 5.686560e-02	ci left: 1.422854e-03	ci right 1.506436e-03	k: 4744	n:3240000
KS ci ratio: 3.728333e-02	ci left: 3.336906e-03	ci right 3.463984e-03	k: 11016	n:3240000
P2RX7   3240000 perm   5124 sec   (632 perm/sec)   p_kst 3.400000e-03   p_cons 1.464198e-03   p_joint 2.290123e-04

Joint ci ratio: 1.436012e-01	ci left: 2.127687e-04	ci right 2.459786e-04	k: 744	n:3250000
Cons ci ratio: 5.679386e-02	ci left: 1.422116e-03	ci right 1.505545e-03	k: 4756	n:3250000
KS ci ratio: 3.722931e-02	ci left: 3.336393e-03	ci right 3.463263e-03	k: 11048	n:3250000
P2RX7   3250000 perm   5153 sec   (631 perm/sec)   p_kst 3.399385e-03   p_cons 1.463385e-03   p_joint 2.289231e-04

Joint ci ratio: 1.432172e-01	ci left: 2.132990e-04	ci right 2.464951e-04	k: 748	n:3260000
Cons ci ratio: 5.673430e-02	ci left: 1.420778e-03	ci right 1.504038e-03	k: 4766	n:3260000
KS ci ratio: 3.718226e-02	ci left: 3.334668e-03	ci right 3.461309e-03	k: 11076	n:3260000
P2RX7   3260000 perm   5181 sec   (629 perm/sec)   p_kst 3.397546e-03   p_cons 1.461963e-03   p_joint 2.294479e-04

Joint ci ratio: 1.430264e-01	ci left: 2.132364e-04	ci right 2.463748e-04	k: 750	n:3270000
Cons ci ratio: 5.663931e-02	ci left: 1.421257e-03	ci right 1.504401e-03	k: 4782	n:3270000
KS ci ratio: 3.712030e-02	ci left: 3.335680e-03	ci right 3.462144e-03	k: 11113	n:3270000
P2RX7   3270000 perm   5211 sec   (627 perm/sec)   p_kst 3.398471e-03   p_cons 1.462385e-03   p_joint 2.293578e-04

Joint ci ratio: 1.430264e-01	ci left: 2.125863e-04	ci right 2.456236e-04	k: 750	n:3280000
Cons ci ratio: 5.658615e-02	ci left: 1.419629e-03	ci right 1.502597e-03	k: 4791	n:3280000
KS ci ratio: 3.706532e-02	ci left: 3.335478e-03	ci right 3.461742e-03	k: 11146	n:3280000
P2RX7   3280000 perm   5241 sec   (626 perm/sec)   p_kst 3.398171e-03   p_cons 1.460671e-03   p_joint 2.286585e-04

Joint ci ratio: 1.426470e-01	ci left: 2.131125e-04	ci right 2.461363e-04	k: 754	n:3290000
Cons ci ratio: 5.649779e-02	ci left: 1.419808e-03	ci right 1.502654e-03	k: 4806	n:3290000
KS ci ratio: 3.700394e-02	ci left: 3.336482e-03	ci right 3.462571e-03	k: 11183	n:3290000
P2RX7   3290000 perm   5271 sec   (624 perm/sec)   p_kst 3.399088e-03   p_cons 1.460790e-03   p_joint 2.291793e-04

Joint ci ratio: 1.423644e-01	ci left: 2.133434e-04	ci right 2.463319e-04	k: 757	n:3300000
Cons ci ratio: 5.639813e-02	ci left: 1.420585e-03	ci right 1.503324e-03	k: 4823	n:3300000
KS ci ratio: 3.695278e-02	ci left: 3.335679e-03	ci right 3.461559e-03	k: 11214	n:3300000
P2RX7   3300000 perm   5301 sec   (623 perm/sec)   p_kst 3.398182e-03   p_cons 1.461515e-03   p_joint 2.293939e-04

Joint ci ratio: 1.423645e-01	ci left: 2.126988e-04	ci right 2.455877e-04	k: 757	n:3310000
Cons ci ratio: 5.635732e-02	ci left: 1.418378e-03	ci right 1.500927e-03	k: 4830	n:3310000
KS ci ratio: 3.690513e-02	ci left: 3.334281e-03	ci right 3.459943e-03	k: 11243	n:3310000
P2RX7   3310000 perm   5331 sec   (621 perm/sec)   p_kst 3.396677e-03   p_cons 1.459215e-03   p_joint 2.287009e-04

Joint ci ratio: 1.419903e-01	ci left: 2.132201e-04	ci right 2.460956e-04	k: 761	n:3320000
Cons ci ratio: 5.627003e-02	ci left: 1.418560e-03	ci right 1.500988e-03	k: 4845	n:3320000
KS ci ratio: 3.685437e-02	ci left: 3.333490e-03	ci right 3.458945e-03	k: 11274	n:3320000
P2RX7   3320000 perm   5362 sec   (619 perm/sec)   p_kst 3.395783e-03   p_cons 1.459337e-03   p_joint 2.292169e-04

Joint ci ratio: 1.419903e-01	ci left: 2.125798e-04	ci right 2.453566e-04	k: 761	n:3330000
Cons ci ratio: 5.622369e-02	ci left: 1.416669e-03	ci right 1.498917e-03	k: 4853	n:3330000
KS ci ratio: 3.680056e-02	ci left: 3.333298e-03	ci right 3.458559e-03	k: 11307	n:3330000
P2RX7   3330000 perm   5392 sec   (618 perm/sec)   p_kst 3.395495e-03   p_cons 1.457357e-03   p_joint 2.285285e-04

Joint ci ratio: 1.417116e-01	ci left: 2.128097e-04	ci right 2.455521e-04	k: 764	n:3340000
Cons ci ratio: 5.614279e-02	ci left: 1.416560e-03	ci right 1.498679e-03	k: 4867	n:3340000
KS ci ratio: 3.675187e-02	ci left: 3.332217e-03	ci right 3.457269e-03	k: 11337	n:3340000
P2RX7   3340000 perm   5423 sec   (616 perm/sec)   p_kst 3.394311e-03   p_cons 1.457186e-03   p_joint 2.287425e-04

Joint ci ratio: 1.414346e-01	ci left: 2.130382e-04	ci right 2.457463e-04	k: 767	n:3350000
Cons ci ratio: 5.603351e-02	ci left: 1.417924e-03	ci right 1.499957e-03	k: 4886	n:3350000
KS ci ratio: 3.668879e-02	ci left: 3.333805e-03	ci right 3.458697e-03	k: 11376	n:3350000
P2RX7   3350000 perm   5453 sec   (614 perm/sec)   p_kst 3.395821e-03   p_cons 1.458507e-03   p_joint 2.289552e-04

Joint ci ratio: 1.413426e-01	ci left: 2.126913e-04	ci right 2.453230e-04	k: 768	n:3360000
Cons ci ratio: 5.598776e-02	ci left: 1.416051e-03	ci right 1.497907e-03	k: 4894	n:3360000
KS ci ratio: 3.663731e-02	ci left: 3.333320e-03	ci right 3.458015e-03	k: 11408	n:3360000
P2RX7   3360000 perm   5483 sec   (613 perm/sec)   p_kst 3.395238e-03   p_cons 1.456548e-03   p_joint 2.285714e-04

Joint ci ratio: 1.412508e-01	ci left: 2.123464e-04	ci right 2.449023e-04	k: 769	n:3370000
Cons ci ratio: 5.589647e-02	ci left: 1.416531e-03	ci right 1.498276e-03	k: 4910	n:3370000
KS ci ratio: 3.658124e-02	ci left: 3.333719e-03	ci right 3.458234e-03	k: 11443	n:3370000
P2RX7   3370000 perm   5514 sec   (611 perm/sec)   p_kst 3.395549e-03   p_cons 1.456973e-03   p_joint 2.281899e-04

Joint ci ratio: 1.411592e-01	ci left: 2.120036e-04	ci right 2.444840e-04	k: 770	n:3380000
Cons ci ratio: 5.579428e-02	ci left: 1.417591e-03	ci right 1.499243e-03	k: 4928	n:3380000
KS ci ratio: 3.652063e-02	ci left: 3.334996e-03	ci right 3.459348e-03	k: 11481	n:3380000
P2RX7   3380000 perm   5544 sec   (610 perm/sec)   p_kst 3.396746e-03   p_cons 1.457988e-03   p_joint 2.278107e-04

Joint ci ratio: 1.410678e-01	ci left: 2.116627e-04	ci right 2.440683e-04	k: 771	n:3390000
Cons ci ratio: 5.568139e-02	ci left: 1.419227e-03	ci right 1.500803e-03	k: 4948	n:3390000
KS ci ratio: 3.645081e-02	ci left: 3.338019e-03	ci right 3.462241e-03	k: 11525	n:3390000
P2RX7   3390000 perm   5575 sec   (608 perm/sec)   p_kst 3.399705e-03   p_cons 1.459587e-03   p_joint 2.274336e-04

Joint ci ratio: 1.407945e-01	ci left: 2.118915e-04	ci right 2.442638e-04	k: 774	n:3400000
Cons ci ratio: 5.558037e-02	ci left: 1.420273e-03	ci right 1.501756e-03	k: 4966	n:3400000
KS ci ratio: 3.640348e-02	ci left: 3.336945e-03	ci right 3.460962e-03	k: 11555	n:3400000
P2RX7   3400000 perm   5606 sec   (607 perm/sec)   p_kst 3.398529e-03   p_cons 1.460588e-03   p_joint 2.276471e-04

Joint ci ratio: 1.405228e-01	ci left: 2.121189e-04	ci right 2.444582e-04	k: 777	n:3410000
Cons ci ratio: 5.547991e-02	ci left: 1.421313e-03	ci right 1.502704e-03	k: 4984	n:3410000
KS ci ratio: 3.633904e-02	ci left: 3.339073e-03	ci right 3.462945e-03	k: 11596	n:3410000
P2RX7   3410000 perm   5636 sec   (605 perm/sec)   p_kst 3.400587e-03   p_cons 1.461584e-03   p_joint 2.278592e-04

Joint ci ratio: 1.403425e-01	ci left: 2.120629e-04	ci right 2.443488e-04	k: 779	n:3420000
Cons ci ratio: 5.541328e-02	ci left: 1.420617e-03	ci right 1.501868e-03	k: 4996	n:3420000
KS ci ratio: 3.628589e-02	ci left: 3.339161e-03	ci right 3.462852e-03	k: 11630	n:3420000
P2RX7   3420000 perm   5667 sec   (603 perm/sec)   p_kst 3.400585e-03   p_cons 1.460819e-03   p_joint 2.277778e-04

Joint ci ratio: 1.403425e-01	ci left: 2.114446e-04	ci right 2.436364e-04	k: 779	n:3430000
Cons ci ratio: 5.533582e-02	ci left: 1.420501e-03	ci right 1.501627e-03	k: 5010	n:3430000
KS ci ratio: 3.622206e-02	ci left: 3.341271e-03	ci right 3.464817e-03	k: 11671	n:3430000
P2RX7   3430000 perm   5698 sec   (602 perm/sec)   p_kst 3.402624e-03   p_cons 1.460641e-03   p_joint 2.271137e-04

Joint ci ratio: 1.401630e-01	ci left: 2.113910e-04	ci right 2.435299e-04	k: 781	n:3440000
Cons ci ratio: 5.528624e-02	ci left: 1.418952e-03	ci right 1.499915e-03	k: 5019	n:3440000
KS ci ratio: 3.616942e-02	ci left: 3.341352e-03	ci right 3.464718e-03	k: 11705	n:3440000
P2RX7   3440000 perm   5729 sec   (600 perm/sec)   p_kst 3.402616e-03   p_cons 1.459012e-03   p_joint 2.270349e-04

Joint ci ratio: 1.399841e-01	ci left: 2.113376e-04	ci right 2.434241e-04	k: 783	n:3450000
Cons ci ratio: 5.521480e-02	ci left: 1.418555e-03	ci right 1.499387e-03	k: 5032	n:3450000
KS ci ratio: 3.611701e-02	ci left: 3.341433e-03	ci right 3.464620e-03	k: 11739	n:3450000
P2RX7   3450000 perm   5760 sec   (599 perm/sec)   p_kst 3.402609e-03   p_cons 1.458551e-03   p_joint 2.269565e-04

Joint ci ratio: 1.397170e-01	ci left: 2.115635e-04	ci right 2.436179e-04	k: 786	n:3460000
Cons ci ratio: 5.514364e-02	ci left: 1.418160e-03	ci right 1.498863e-03	k: 5045	n:3460000
KS ci ratio: 3.605868e-02	ci left: 3.342660e-03	ci right 3.465688e-03	k: 11777	n:3460000
P2RX7   3460000 perm   5791 sec   (597 perm/sec)   p_kst 3.403757e-03   p_cons 1.458092e-03   p_joint 2.271676e-04

Joint ci ratio: 1.392752e-01	ci left: 2.123445e-04	ci right 2.444070e-04	k: 791	n:3470000
Cons ci ratio: 5.508367e-02	ci left: 1.417200e-03	ci right 1.497757e-03	k: 5056	n:3470000
KS ci ratio: 3.600369e-02	ci left: 3.343308e-03	ci right 3.466169e-03	k: 11813	n:3470000
P2RX7   3470000 perm   5822 sec   (596 perm/sec)   p_kst 3.404323e-03   p_cons 1.457061e-03   p_joint 2.279539e-04

Joint ci ratio: 1.390997e-01	ci left: 2.122890e-04	ci right 2.442994e-04	k: 793	n:3480000
Cons ci ratio: 5.499672e-02	ci left: 1.417662e-03	ci right 1.498114e-03	k: 5072	n:3480000
KS ci ratio: 3.594286e-02	ci left: 3.345092e-03	ci right 3.467806e-03	k: 11853	n:3480000
P2RX7   3480000 perm   5853 sec   (595 perm/sec)   p_kst 3.406034e-03   p_cons 1.457471e-03   p_joint 2.278736e-04

Joint ci ratio: 1.387506e-01	ci left: 2.127870e-04	ci right 2.447853e-04	k: 797	n:3490000
Cons ci ratio: 5.489398e-02	ci left: 1.418969e-03	ci right 1.499340e-03	k: 5091	n:3490000
KS ci ratio: 3.589748e-02	ci left: 3.344025e-03	ci right 3.466543e-03	k: 11883	n:3490000
P2RX7   3490000 perm   5885 sec   (593 perm/sec)   p_kst 3.404871e-03   p_cons 1.458739e-03   p_joint 2.283668e-04

Joint ci ratio: 1.385771e-01	ci left: 2.127307e-04	ci right 2.446772e-04	k: 799	n:3500000
Cons ci ratio: 5.481331e-02	ci left: 1.419142e-03	ci right 1.499401e-03	k: 5106	n:3500000
KS ci ratio: 3.584775e-02	ci left: 3.343815e-03	ci right 3.466152e-03	k: 11916	n:3500000
P2RX7   3500000 perm   5916 sec   (592 perm/sec)   p_kst 3.404571e-03   p_cons 1.458857e-03   p_joint 2.282857e-04

Joint ci ratio: 1.382319e-01	ci left: 2.132247e-04	ci right 2.451591e-04	k: 803	n:3510000
Cons ci ratio: 5.473298e-02	ci left: 1.419314e-03	ci right 1.499461e-03	k: 5121	n:3510000
KS ci ratio: 3.580123e-02	ci left: 3.343041e-03	ci right 3.465188e-03	k: 11947	n:3510000
P2RX7   3510000 perm   5948 sec   (590 perm/sec)   p_kst 3.403704e-03   p_cons 1.458974e-03   p_joint 2.287749e-04

Joint ci ratio: 1.380603e-01	ci left: 2.131675e-04	ci right 2.450505e-04	k: 805	n:3520000
Cons ci ratio: 5.465301e-02	ci left: 1.419484e-03	ci right 1.499521e-03	k: 5136	n:3520000
KS ci ratio: 3.574442e-02	ci left: 3.344243e-03	ci right 3.466235e-03	k: 11985	n:3520000
P2RX7   3520000 perm   5980 sec   (589 perm/sec)   p_kst 3.404830e-03   p_cons 1.459091e-03   p_joint 2.286932e-04

Joint ci ratio: 1.379747e-01	ci left: 2.128372e-04	ci right 2.446493e-04	k: 806	n:3530000
Cons ci ratio: 5.454159e-02	ci left: 1.421331e-03	ci right 1.501303e-03	k: 5157	n:3530000
KS ci ratio: 3.570724e-02	ci left: 3.341788e-03	ci right 3.463561e-03	k: 12010	n:3530000
P2RX7   3530000 perm   6013 sec   (587 perm/sec)   p_kst 3.402266e-03   p_cons 1.460907e-03   p_joint 2.283286e-04

Joint ci ratio: 1.386640e-01	ci left: 2.100542e-04	ci right 2.416202e-04	k: 798	n:3540000
Cons ci ratio: 5.445718e-02	ci left: 1.421774e-03	ci right 1.501644e-03	k: 5173	n:3540000
KS ci ratio: 3.564939e-02	ci left: 3.343267e-03	ci right 3.464892e-03	k: 12049	n:3540000
P2RX7   3540000 perm   6045 sec   (586 perm/sec)   p_kst 3.403672e-03   p_cons 1.461299e-03   p_joint 2.254237e-04

Joint ci ratio: 1.386640e-01	ci left: 2.094625e-04	ci right 2.409396e-04	k: 798	n:3550000
Cons ci ratio: 5.437317e-02	ci left: 1.422215e-03	ci right 1.501982e-03	k: 5189	n:3550000
KS ci ratio: 3.560807e-02	ci left: 3.341666e-03	ci right 3.463090e-03	k: 12077	n:3550000
P2RX7   3550000 perm   6077 sec   (584 perm/sec)   p_kst 3.401972e-03   p_cons 1.461690e-03   p_joint 2.247887e-04

Joint ci ratio: 1.384908e-01	ci left: 2.094165e-04	ci right 2.408441e-04	k: 800	n:3560000
Cons ci ratio: 5.429476e-02	ci left: 1.422376e-03	ci right 1.502034e-03	k: 5204	n:3560000
KS ci ratio: 3.557132e-02	ci left: 3.339239e-03	ci right 3.460447e-03	k: 12102	n:3560000
P2RX7   3560000 perm   6109 sec   (583 perm/sec)   p_kst 3.399438e-03   p_cons 1.461798e-03   p_joint 2.247191e-04

Joint ci ratio: 1.383182e-01	ci left: 2.093707e-04	ci right 2.407490e-04	k: 802	n:3570000
Cons ci ratio: 5.423230e-02	ci left: 1.421708e-03	ci right 1.501233e-03	k: 5216	n:3570000
KS ci ratio: 3.552146e-02	ci left: 3.339325e-03	ci right 3.460362e-03	k: 12136	n:3570000
P2RX7   3570000 perm   6142 sec   (581 perm/sec)   p_kst 3.399440e-03   p_cons 1.461064e-03   p_joint 2.246499e-04

Joint ci ratio: 1.378043e-01	ci left: 2.104039e-04	ci right 2.418104e-04	k: 808	n:3580000
Cons ci ratio: 5.416487e-02	ci left: 1.421319e-03	ci right 1.500720e-03	k: 5229	n:3580000
KS ci ratio: 3.546889e-02	ci left: 3.339964e-03	ci right 3.460842e-03	k: 12172	n:3580000
P2RX7   3580000 perm   6174 sec   (580 perm/sec)   p_kst 3.400000e-03   p_cons 1.460615e-03   p_joint 2.256983e-04

Joint ci ratio: 1.374648e-01	ci left: 2.108937e-04	ci right 2.422894e-04	k: 812	n:3590000
Cons ci ratio: 5.408220e-02	ci left: 1.421756e-03	ci right 1.501057e-03	k: 5245	n:3590000
KS ci ratio: 3.541946e-02	ci left: 3.340047e-03	ci right 3.460756e-03	k: 12206	n:3590000
P2RX7   3590000 perm   6207 sec   (578 perm/sec)   p_kst 3.400000e-03   p_cons 1.461003e-03   p_joint 2.261838e-04

Joint ci ratio: 1.373804e-01	ci left: 2.105761e-04	ci right 2.419037e-04	k: 813	n:3600000
Cons ci ratio: 5.397936e-02	ci left: 1.423287e-03	ci right 1.502518e-03	k: 5265	n:3600000
KS ci ratio: 3.537313e-02	ci left: 3.339579e-03	ci right 3.460110e-03	k: 12238	n:3600000
P2RX7   3600000 perm   6239 sec   (577 perm/sec)   p_kst 3.399444e-03   p_cons 1.462500e-03   p_joint 2.258333e-04

Joint ci ratio: 1.371279e-01	ci left: 2.107953e-04	ci right 2.420931e-04	k: 816	n:3610000
Cons ci ratio: 5.392309e-02	ci left: 1.422350e-03	ci right 1.501444e-03	k: 5276	n:3610000
KS ci ratio: 3.532410e-02	ci left: 3.339664e-03	ci right 3.460027e-03	k: 12272	n:3610000
P2RX7   3610000 perm   6272 sec   (576 perm/sec)   p_kst 3.399446e-03   p_cons 1.461496e-03   p_joint 2.260388e-04

Joint ci ratio: 1.370441e-01	ci left: 2.104798e-04	ci right 2.417101e-04	k: 817	n:3620000
Cons ci ratio: 5.386191e-02	ci left: 1.421692e-03	ci right 1.500656e-03	k: 5288	n:3620000
KS ci ratio: 3.528103e-02	ci left: 3.338652e-03	ci right 3.458830e-03	k: 12302	n:3620000
P2RX7   3620000 perm   6304 sec   (574 perm/sec)   p_kst 3.398343e-03   p_cons 1.460773e-03   p_joint 2.256906e-04

Joint ci ratio: 1.370441e-01	ci left: 2.098999e-04	ci right 2.410442e-04	k: 817	n:3630000
Cons ci ratio: 5.379077e-02	ci left: 1.421580e-03	ci right 1.500431e-03	k: 5302	n:3630000
KS ci ratio: 3.523811e-02	ci left: 3.337646e-03	ci right 3.457638e-03	k: 12332	n:3630000
P2RX7   3630000 perm   6337 sec   (573 perm/sec)   p_kst 3.397245e-03   p_cons 1.460606e-03   p_joint 2.250689e-04

Joint ci ratio: 1.368769e-01	ci left: 2.098539e-04	ci right 2.409502e-04	k: 819	n:3640000
Cons ci ratio: 5.371485e-02	ci left: 1.421740e-03	ci right 1.500485e-03	k: 5317	n:3640000
KS ci ratio: 3.519392e-02	ci left: 3.336918e-03	ci right 3.456731e-03	k: 12363	n:3640000
P2RX7   3640000 perm   6370 sec   (571 perm/sec)   p_kst 3.396429e-03   p_cons 1.460714e-03   p_joint 2.250000e-04

Joint ci ratio: 1.367103e-01	ci left: 2.098081e-04	ci right 2.408568e-04	k: 821	n:3650000
Cons ci ratio: 5.364933e-02	ci left: 1.421359e-03	ci right 1.499984e-03	k: 5330	n:3650000
KS ci ratio: 3.514279e-02	ci left: 3.337552e-03	ci right 3.457210e-03	k: 12399	n:3650000
P2RX7   3650000 perm   6402 sec   (570 perm/sec)   p_kst 3.396986e-03   p_cons 1.460274e-03   p_joint 2.249315e-04

Joint ci ratio: 1.361318e-01	ci left: 2.110822e-04	ci right 2.421765e-04	k: 828	n:3660000
Cons ci ratio: 5.355896e-02	ci left: 1.422327e-03	ci right 1.500869e-03	k: 5348	n:3660000
KS ci ratio: 3.510604e-02	ci left: 3.335475e-03	ci right 3.454930e-03	k: 12425	n:3660000
P2RX7   3660000 perm   6435 sec   (569 perm/sec)   p_kst 3.394809e-03   p_cons 1.461202e-03   p_joint 2.262295e-04

Joint ci ratio: 1.150274e-01	ci left: 2.981493e-04	ci right 3.347993e-04	k: 1160	n:3670000
Cons ci ratio: 5.040596e-02	ci left: 1.603756e-03	ci right 1.686952e-03	k: 6037	n:3670000
KS ci ratio: 3.504823e-02	ci left: 3.337460e-03	ci right 3.456786e-03	k: 12466	n:3670000
P2RX7   3670000 perm   6468 sec   (567 perm/sec)   p_kst 3.396730e-03   p_cons 1.644959e-03   p_joint 3.160763e-04

Joint ci ratio: 1.149284e-01	ci left: 2.978669e-04	ci right 3.344486e-04	k: 1162	n:3680000
Cons ci ratio: 5.031434e-02	ci left: 1.605301e-03	ci right 1.688421e-03	k: 6059	n:3680000
KS ci ratio: 3.500054e-02	ci left: 3.337549e-03	ci right 3.456713e-03	k: 12500	n:3680000
P2RX7   3680000 perm   6501 sec   (566 perm/sec)   p_kst 3.396739e-03   p_cons 1.646467e-03   p_joint 3.157609e-04

Joint ci ratio: 1.146331e-01	ci left: 2.986390e-04	ci right 3.352149e-04	k: 1168	n:3690000
Cons ci ratio: 5.024806e-02	ci left: 1.605232e-03	ci right 1.688236e-03	k: 6075	n:3690000
KS ci ratio: 3.495024e-02	ci left: 3.338175e-03	ci right 3.457186e-03	k: 12536	n:3690000
P2RX7   3690000 perm   6534 sec   (565 perm/sec)   p_kst 3.397290e-03   p_cons 1.646341e-03   p_joint 3.165312e-04

Joint ci ratio: 1.144863e-01	ci left: 2.986195e-04	ci right 3.351429e-04	k: 1171	n:3700000
Cons ci ratio: 5.015318e-02	ci left: 1.607032e-03	ci right 1.689967e-03	k: 6098	n:3700000
KS ci ratio: 3.489320e-02	ci left: 3.340137e-03	ci right 3.459020e-03	k: 12577	n:3700000
P2RX7   3700000 perm   6568 sec   (563 perm/sec)   p_kst 3.399189e-03   p_cons 1.648108e-03   p_joint 3.164865e-04

Joint ci ratio: 1.143887e-01	ci left: 2.983382e-04	ci right 3.347941e-04	k: 1173	n:3710000
Cons ci ratio: 5.009984e-02	ci left: 1.606160e-03	ci right 1.688960e-03	k: 6111	n:3710000
KS ci ratio: 3.484752e-02	ci left: 3.339952e-03	ci right 3.458669e-03	k: 12610	n:3710000
P2RX7   3710000 perm   6601 sec   (562 perm/sec)   p_kst 3.398922e-03   p_cons 1.647170e-03   p_joint 3.161725e-04

Joint ci ratio: 1.142429e-01	ci left: 2.983196e-04	ci right 3.347236e-04	k: 1176	n:3720000
Cons ci ratio: 5.002213e-02	ci left: 1.606886e-03	ci right 1.689591e-03	k: 6130	n:3720000
KS ci ratio: 3.479650e-02	ci left: 3.340833e-03	ci right 3.459404e-03	k: 12647	n:3720000
P2RX7   3720000 perm   6634 sec   (561 perm/sec)   p_kst 3.399731e-03   p_cons 1.647849e-03   p_joint 3.161290e-04

Joint ci ratio: 1.141944e-01	ci left: 2.977803e-04	ci right 3.341020e-04	k: 1177	n:3730000
Cons ci ratio: 4.994885e-02	ci left: 1.607344e-03	ci right 1.689948e-03	k: 6148	n:3730000
KS ci ratio: 3.475120e-02	ci left: 3.340647e-03	ci right 3.459054e-03	k: 12680	n:3730000
P2RX7   3730000 perm   6668 sec   (559 perm/sec)   p_kst 3.399464e-03   p_cons 1.648257e-03   p_joint 3.155496e-04

Joint ci ratio: 1.139528e-01	ci left: 2.982828e-04	ci right 3.345837e-04	k: 1182	n:3740000
Cons ci ratio: 4.987184e-02	ci left: 1.608063e-03	ci right 1.690573e-03	k: 6167	n:3740000
KS ci ratio: 3.470744e-02	ci left: 3.340196e-03	ci right 3.458436e-03	k: 12712	n:3740000
P2RX7   3740000 perm   6701 sec   (558 perm/sec)   p_kst 3.398930e-03   p_cons 1.648930e-03   p_joint 3.160428e-04

Joint ci ratio: 1.137127e-01	ci left: 2.987828e-04	ci right 3.350627e-04	k: 1187	n:3750000
Cons ci ratio: 4.981132e-02	ci left: 1.607725e-03	ci right 1.690114e-03	k: 6182	n:3750000
KS ci ratio: 3.466112e-02	ci left: 3.340277e-03	ci right 3.458358e-03	k: 12746	n:3750000
P2RX7   3750000 perm   6734 sec   (557 perm/sec)   p_kst 3.398933e-03   p_cons 1.648533e-03   p_joint 3.165333e-04

Joint ci ratio: 1.134741e-01	ci left: 2.992802e-04	ci right 3.355392e-04	k: 1192	n:3760000
Cons ci ratio: 4.974298e-02	ci left: 1.607914e-03	ci right 1.690197e-03	k: 6199	n:3760000
KS ci ratio: 3.461907e-02	ci left: 3.339567e-03	ci right 3.457477e-03	k: 12777	n:3760000
P2RX7   3760000 perm   6768 sec   (556 perm/sec)   p_kst 3.398138e-03   p_cons 1.648670e-03   p_joint 3.170213e-04

Joint ci ratio: 1.022216e-01	ci left: 3.699853e-04	ci right 4.100989e-04	k: 1469	n:3770000
Cons ci ratio: 4.967492e-02	ci left: 1.608102e-03	ci right 1.690279e-03	k: 6216	n:3770000
KS ci ratio: 3.515750e-02	ci left: 3.228948e-03	ci right 3.344761e-03	k: 12390	n:3770000
P2RX7   3770000 perm   6802 sec   (554 perm/sec)   p_kst 3.286472e-03   p_cons 1.648806e-03   p_joint 3.896552e-04

Joint ci ratio: 1.020828e-01	ci left: 3.700377e-04	ci right 4.100992e-04	k: 1473	n:3780000
Cons ci ratio: 4.961910e-02	ci left: 1.607506e-03	ci right 1.689557e-03	k: 6230	n:3780000
KS ci ratio: 3.509519e-02	ci left: 3.231944e-03	ci right 3.347655e-03	k: 12434	n:3780000
P2RX7   3780000 perm   6836 sec   (553 perm/sec)   p_kst 3.289418e-03   p_cons 1.648148e-03   p_joint 3.896825e-04

Joint ci ratio: 1.019791e-01	ci left: 3.698327e-04	ci right 4.098289e-04	k: 1476	n:3790000
Cons ci ratio: 4.956744e-02	ci left: 1.606652e-03	ci right 1.688572e-03	k: 6243	n:3790000
KS ci ratio: 3.505012e-02	ci left: 3.231785e-03	ci right 3.347340e-03	k: 12466	n:3790000
P2RX7   3790000 perm   6870 sec   (552 perm/sec)   p_kst 3.289182e-03   p_cons 1.647230e-03   p_joint 3.894459e-04

Joint ci ratio: 1.023612e-01	ci left: 3.660386e-04	ci right 4.057818e-04	k: 1465	n:3800000
Cons ci ratio: 4.950802e-02	ci left: 1.606322e-03	ci right 1.688124e-03	k: 6258	n:3800000
KS ci ratio: 3.501366e-02	ci left: 3.230063e-03	ci right 3.345433e-03	k: 12492	n:3800000
P2RX7   3800000 perm   6904 sec   (550 perm/sec)   p_kst 3.287368e-03   p_cons 1.646842e-03   p_joint 3.855263e-04

Joint ci ratio: 1.022566e-01	ci left: 3.658451e-04	ci right 4.055243e-04	k: 1468	n:3810000
Cons ci ratio: 4.944881e-02	ci left: 1.605994e-03	ci right 1.687679e-03	k: 6273	n:3810000
KS ci ratio: 3.496751e-02	ci left: 3.230171e-03	ci right 3.345389e-03	k: 12525	n:3810000
P2RX7   3810000 perm   6939 sec   (549 perm/sec)   p_kst 3.287402e-03   p_cons 1.646457e-03   p_joint 3.853018e-04

Joint ci ratio: 1.021871e-01	ci left: 3.653976e-04	ci right 4.049997e-04	k: 1470	n:3820000
Cons ci ratio: 4.938588e-02	ci left: 1.605927e-03	ci right 1.687502e-03	k: 6289	n:3820000
KS ci ratio: 3.493131e-02	ci left: 3.228462e-03	ci right 3.343498e-03	k: 12551	n:3820000
P2RX7   3820000 perm   6973 sec   (548 perm/sec)   p_kst 3.285602e-03   p_cons 1.646335e-03   p_joint 3.848168e-04

Joint ci ratio: 1.019793e-01	ci left: 3.659701e-04	ci right 4.055488e-04	k: 1476	n:3830000
Cons ci ratio: 4.933495e-02	ci left: 1.605086e-03	ci right 1.686532e-03	k: 6302	n:3830000
KS ci ratio: 3.488548e-02	ci left: 3.228573e-03	ci right 3.343459e-03	k: 12584	n:3830000
P2RX7   3830000 perm   7007 sec   (547 perm/sec)   p_kst 3.285640e-03   p_cons 1.645431e-03   p_joint 3.853786e-04

Joint ci ratio: 1.021178e-01	ci left: 3.640020e-04	ci right 4.034244e-04	k: 1472	n:3840000
Cons ci ratio: 4.926855e-02	ci left: 1.605279e-03	ci right 1.686621e-03	k: 6319	n:3840000
KS ci ratio: 3.482599e-02	ci left: 3.231266e-03	ci right 3.346048e-03	k: 12627	n:3840000
P2RX7   3840000 perm   7042 sec   (545 perm/sec)   p_kst 3.288281e-03   p_cons 1.645573e-03   p_joint 3.833333e-04

Joint ci ratio: 1.019104e-01	ci left: 3.645752e-04	ci right 4.039748e-04	k: 1478	n:3850000
Cons ci ratio: 4.918299e-02	ci left: 1.606753e-03	ci right 1.688025e-03	k: 6341	n:3850000
KS ci ratio: 3.477231e-02	ci left: 3.232915e-03	ci right 3.347575e-03	k: 12666	n:3850000
P2RX7   3850000 perm   7076 sec   (544 perm/sec)   p_kst 3.289870e-03   p_cons 1.647013e-03   p_joint 3.838961e-04

Joint ci ratio: 1.017386e-01	ci left: 3.648931e-04	ci right 4.042565e-04	k: 1483	n:3860000
Cons ci ratio: 4.912881e-02	ci left: 1.606173e-03	ci right 1.687323e-03	k: 6355	n:3860000
KS ci ratio: 3.473671e-02	ci left: 3.231216e-03	ci right 3.345697e-03	k: 12692	n:3860000
P2RX7   3860000 perm   7111 sec   (543 perm/sec)   p_kst 3.288083e-03   p_cons 1.646373e-03   p_joint 3.841969e-04

Joint ci ratio: 1.016701e-01	ci left: 3.644538e-04	ci right 4.037419e-04	k: 1485	n:3870000
Cons ci ratio: 4.910957e-02	ci left: 1.603299e-03	ci right 1.684271e-03	k: 6360	n:3870000
KS ci ratio: 3.469301e-02	ci left: 3.231064e-03	ci right 3.345392e-03	k: 12724	n:3870000
P2RX7   3870000 perm   7145 sec   (542 perm/sec)   p_kst 3.287855e-03   p_cons 1.643411e-03   p_joint 3.837209e-04

Joint ci ratio: 1.024665e-01	ci left: 3.577380e-04	ci right 3.966223e-04	k: 1462	n:3880000
Cons ci ratio: 4.903252e-02	ci left: 1.604258e-03	ci right 1.685148e-03	k: 6380	n:3880000
KS ci ratio: 3.465083e-02	ci left: 3.230657e-03	ci right 3.344829e-03	k: 12755	n:3880000
P2RX7   3880000 perm   7180 sec   (540 perm/sec)   p_kst 3.287371e-03   p_cons 1.644330e-03   p_joint 3.768041e-04

Joint ci ratio: 1.023616e-01	ci left: 3.575698e-04	ci right 3.963936e-04	k: 1465	n:3890000
Cons ci ratio: 4.894435e-02	ci left: 1.605974e-03	ci right 1.686801e-03	k: 6403	n:3890000
KS ci ratio: 3.460338e-02	ci left: 3.231271e-03	ci right 3.345305e-03	k: 12790	n:3890000
P2RX7   3890000 perm   7215 sec   (539 perm/sec)   p_kst 3.287918e-03   p_cons 1.646015e-03   p_joint 3.766067e-04

Joint ci ratio: 1.021528e-01	ci left: 3.581520e-04	ci right 3.969550e-04	k: 1471	n:3900000
Cons ci ratio: 4.885285e-02	ci left: 1.607935e-03	ci right 1.688705e-03	k: 6427	n:3900000
KS ci ratio: 3.455478e-02	ci left: 3.232137e-03	ci right 3.346038e-03	k: 12826	n:3900000
P2RX7   3900000 perm   7250 sec   (538 perm/sec)   p_kst 3.288718e-03   p_cons 1.647949e-03   p_joint 3.771795e-04

Joint ci ratio: 1.020835e-01	ci left: 3.577345e-04	ci right 3.964644e-04	k: 1473	n:3910000
Cons ci ratio: 4.880354e-02	ci left: 1.607107e-03	ci right 1.687752e-03	k: 6440	n:3910000
KS ci ratio: 3.449696e-02	ci left: 3.234773e-03	ci right 3.348573e-03	k: 12869	n:3910000
P2RX7   3910000 perm   7285 sec   (537 perm/sec)   p_kst 3.291304e-03   p_cons 1.647059e-03   p_joint 3.767263e-04

Joint ci ratio: 1.018419e-01	ci left: 3.585621e-04	ci right 3.972842e-04	k: 1480	n:3920000
Cons ci ratio: 4.875061e-02	ci left: 1.606535e-03	ci right 1.687061e-03	k: 6454	n:3920000
KS ci ratio: 3.445148e-02	ci left: 3.235120e-03	ci right 3.348779e-03	k: 12903	n:3920000
P2RX7   3920000 perm   7320 sec   (536 perm/sec)   p_kst 3.291582e-03   p_cons 1.646429e-03   p_joint 3.775510e-04

Joint ci ratio: 1.018076e-01	ci left: 3.578977e-04	ci right 3.965342e-04	k: 1481	n:3930000
Cons ci ratio: 4.867900e-02	ci left: 1.607223e-03	ci right 1.687662e-03	k: 6473	n:3930000
KS ci ratio: 3.440884e-02	ci left: 3.234961e-03	ci right 3.348470e-03	k: 12935	n:3930000
P2RX7   3930000 perm   7355 sec   (534 perm/sec)   p_kst 3.291349e-03   p_cons 1.647074e-03   p_joint 3.768448e-04

Joint ci ratio: 1.016704e-01	ci left: 3.579787e-04	ci right 3.965689e-04	k: 1485	n:3940000
Cons ci ratio: 4.860021e-02	ci left: 1.608409e-03	ci right 1.688773e-03	k: 6494	n:3940000
KS ci ratio: 3.438233e-02	ci left: 3.231783e-03	ci right 3.345092e-03	k: 12955	n:3940000
P2RX7   3940000 perm   7390 sec   (533 perm/sec)   p_kst 3.288071e-03   p_cons 1.648223e-03   p_joint 3.769036e-04

Joint ci ratio: 1.016021e-01	ci left: 3.575659e-04	ci right 3.960841e-04	k: 1487	n:3950000
Cons ci ratio: 4.857036e-02	ci left: 1.606337e-03	ci right 1.686548e-03	k: 6502	n:3950000
KS ci ratio: 3.433332e-02	ci left: 3.232887e-03	ci right 3.346070e-03	k: 12992	n:3950000
P2RX7   3950000 perm   7425 sec   (532 perm/sec)   p_kst 3.289114e-03   p_cons 1.646076e-03   p_joint 3.764557e-04

Joint ci ratio: 1.014318e-01	ci left: 3.578935e-04	ci right 3.963785e-04	k: 1492	n:3960000
Cons ci ratio: 4.850700e-02	ci left: 1.606522e-03	ci right 1.686634e-03	k: 6519	n:3960000
KS ci ratio: 3.428848e-02	ci left: 3.233236e-03	ci right 3.346280e-03	k: 13026	n:3960000
P2RX7   3960000 perm   7460 sec   (531 perm/sec)   p_kst 3.289394e-03   p_cons 1.646212e-03   p_joint 3.767677e-04

Joint ci ratio: 1.012962e-01	ci left: 3.579740e-04	ci right 3.964132e-04	k: 1496	n:3970000
Cons ci ratio: 4.840681e-02	ci left: 1.609194e-03	ci right 1.689269e-03	k: 6546	n:3970000
KS ci ratio: 3.424119e-02	ci left: 3.234082e-03	ci right 3.346997e-03	k: 13062	n:3970000
P2RX7   3970000 perm   7495 sec   (530 perm/sec)   p_kst 3.290176e-03   p_cons 1.648866e-03   p_joint 3.768262e-04

Joint ci ratio: 1.011275e-01	ci left: 3.582991e-04	ci right 3.967052e-04	k: 1501	n:3980000
Cons ci ratio: 4.834777e-02	ci left: 1.609122e-03	ci right 1.689093e-03	k: 6562	n:3980000
KS ci ratio: 3.420720e-02	ci left: 3.232433e-03	ci right 3.345176e-03	k: 13088	n:3980000
P2RX7   3980000 perm   7530 sec   (529 perm/sec)   p_kst 3.288442e-03   p_cons 1.648744e-03   p_joint 3.771357e-04

Joint ci ratio: 1.009931e-01	ci left: 3.583783e-04	ci right 3.967388e-04	k: 1505	n:3990000
Cons ci ratio: 4.829630e-02	ci left: 1.608556e-03	ci right 1.688411e-03	k: 6576	n:3990000
KS ci ratio: 3.416285e-02	ci left: 3.232780e-03	ci right 3.345386e-03	k: 13122	n:3990000
P2RX7   3990000 perm   7565 sec   (527 perm/sec)   p_kst 3.288722e-03   p_cons 1.648120e-03   p_joint 3.771930e-04

Joint ci ratio: 1.009931e-01	ci left: 3.574823e-04	ci right 3.957470e-04	k: 1505	n:4000000
Cons ci ratio: 4.824499e-02	ci left: 1.607992e-03	ci right 1.687732e-03	k: 6590	n:4000000
KS ci ratio: 3.412258e-02	ci left: 3.232382e-03	ci right 3.344839e-03	k: 13153	n:4000000
P2RX7   4000000 perm   7601 sec   (526 perm/sec)   p_kst 3.288250e-03   p_cons 1.647500e-03   p_joint 3.762500e-04

Joint ci ratio: 1.008259e-01	ci left: 3.578063e-04	ci right 3.960384e-04	k: 1510	n:4010000
Cons ci ratio: 4.821579e-02	ci left: 1.605953e-03	ci right 1.685542e-03	k: 6598	n:4010000
KS ci ratio: 3.408245e-02	ci left: 3.231986e-03	ci right 3.344294e-03	k: 13184	n:4010000
P2RX7   4010000 perm   7637 sec   (525 perm/sec)   p_kst 3.287781e-03   p_cons 1.645387e-03   p_joint 3.765586e-04

Joint ci ratio: 1.006594e-01	ci left: 3.581286e-04	ci right 3.963284e-04	k: 1515	n:4020000
Cons ci ratio: 4.812831e-02	ci left: 1.607856e-03	ci right 1.687392e-03	k: 6622	n:4020000
KS ci ratio: 3.402955e-02	ci left: 3.234058e-03	ci right 3.346261e-03	k: 13225	n:4020000
P2RX7   4020000 perm   7673 sec   (524 perm/sec)   p_kst 3.289801e-03   p_cons 1.647264e-03   p_joint 3.768657e-04

Joint ci ratio: 1.005269e-01	ci left: 3.582076e-04	ci right 3.963624e-04	k: 1519	n:4030000
Cons ci ratio: 4.808842e-02	ci left: 1.606563e-03	ci right 1.685967e-03	k: 6633	n:4030000
KS ci ratio: 3.398846e-02	ci left: 3.233906e-03	ci right 3.345966e-03	k: 13257	n:4030000
P2RX7   4030000 perm   7709 sec   (523 perm/sec)   p_kst 3.289578e-03   p_cons 1.645906e-03   p_joint 3.769231e-04

Joint ci ratio: 1.003949e-01	ci left: 3.582861e-04	ci right 3.963963e-04	k: 1523	n:4040000
Cons ci ratio: 4.801969e-02	ci left: 1.607233e-03	ci right 1.686553e-03	k: 6652	n:4040000
KS ci ratio: 3.394880e-02	ci left: 3.233510e-03	ci right 3.345422e-03	k: 13288	n:4040000
P2RX7   4040000 perm   7745 sec   (522 perm/sec)   p_kst 3.289109e-03   p_cons 1.646535e-03   p_joint 3.769802e-04

Joint ci ratio: 1.002634e-01	ci left: 3.583644e-04	ci right 3.964300e-04	k: 1527	n:4050000
Cons ci ratio: 4.795845e-02	ci left: 1.607412e-03	ci right 1.686637e-03	k: 6669	n:4050000
KS ci ratio: 3.390672e-02	ci left: 3.233605e-03	ci right 3.345379e-03	k: 13321	n:4050000
P2RX7   4050000 perm   7782 sec   (520 perm/sec)   p_kst 3.289136e-03   p_cons 1.646667e-03   p_joint 3.770370e-04

Joint ci ratio: 1.001324e-01	ci left: 3.584422e-04	ci right 3.964635e-04	k: 1531	n:4060000
Cons ci ratio: 4.788669e-02	ci left: 1.608320e-03	ci right 1.687468e-03	k: 6689	n:4060000
KS ci ratio: 3.386735e-02	ci left: 3.233211e-03	ci right 3.344839e-03	k: 13352	n:4060000
P2RX7   4060000 perm   7818 sec   (519 perm/sec)   p_kst 3.288670e-03   p_cons 1.647537e-03   p_joint 3.770936e-04

Joint ci ratio: 1.000345e-01	ci left: 3.582802e-04	ci right 3.962449e-04	k: 1534	n:4070000
Cons ci ratio: 4.786172e-02	ci left: 1.606067e-03	ci right 1.685062e-03	k: 6696	n:4070000
KS ci ratio: 3.382938e-02	ci left: 3.232576e-03	ci right 3.344054e-03	k: 13382	n:4070000
P2RX7   4070000 perm   7855 sec   (518 perm/sec)   p_kst 3.287961e-03   p_cons 1.645209e-03   p_joint 3.769042e-04

Joint ci ratio: 9.990444e-02	ci left: 3.583579e-04	ci right 3.962786e-04	k: 1538	n:4080000
Cons ci ratio: 4.778682e-02	ci left: 1.607217e-03	ci right 1.686140e-03	k: 6717	n:4080000
KS ci ratio: 3.379913e-02	ci left: 3.230485e-03	ci right 3.341790e-03	k: 13406	n:4080000
P2RX7   4080000 perm   7891 sec   (517 perm/sec)   p_kst 3.285784e-03   p_cons 1.646324e-03   p_joint 3.769608e-04

Outputting figure to mutsig2_images.part000000000125/P2RX7.5_1840_4080000_0.0032858_0.0016463_0.00037696.png
                gene_name: P2RX7
               theta_stop: 0.100 
                    nperm: 4080000 
                     p_ks: 0.0033 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0033 
                   p_cons: 0.0016 
      ci_cons_bounds_left: 0.0016 
     ci_cons_bounds_right: 0.0017 
                  p_joint: 0.00038 
     ci_joint_bounds_left: 0.00036 
    ci_joint_bounds_right: 0.00040 

Current progress: 25 percent done.
P2RY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
Cons ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KS ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
P2RY1   10000 perm   2 sec   (5764 perm/sec)   p_kst 7.694000e-01   p_cons 1.662000e-01   p_joint 5.590000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY1.5_1126_10000_0.7694_0.1662_0.559.png
                gene_name: P2RY1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
P4HTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
P4HTM   10000 perm   2 sec   (5443 perm/sec)   p_kst 7.594000e-01   p_cons 8.550000e-02   p_joint 3.300000e-01

Joint ci ratio: 4.689647e-02	ci left: 2.527901e-01	ci right 2.649801e-01	k: 5177	n:20000
Cons ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
KS ci ratio: 1.574291e-02	ci left: 7.500865e-01	ci right 7.620390e-01	k: 15122	n:20000
P4HTM   20000 perm   4 sec   (4831 perm/sec)   p_kst 7.561000e-01   p_cons 8.675000e-02   p_joint 2.588500e-01

Outputting figure to mutsig2_images.part000000000125/P4HTM.5_1728_20000_0.7561_0.08675_0.25885.png
                gene_name: P4HTM
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 28 percent done.
PAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
Cons ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
KS ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
PAK1   10000 perm   2 sec   (5678 perm/sec)   p_kst 5.590000e-01   p_cons 6.219000e-01   p_joint 6.865000e-01

Outputting figure to mutsig2_images.part000000000125/PAK1.5_1747_10000_0.559_0.6219_0.6865.png
                gene_name: PAK1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 30 percent done.
PAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
Cons ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
KS ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
PAN3   10000 perm   2 sec   (4850 perm/sec)   p_kst 2.445000e-01   p_cons 2.220000e-02   p_joint 7.170000e-02

Joint ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
Cons ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
KS ci ratio: 4.910306e-02	ci left: 2.356805e-01	ci right 2.475947e-01	k: 4832	n:20000
PAN3   20000 perm   5 sec   (4396 perm/sec)   p_kst 2.416000e-01   p_cons 2.085000e-02   p_joint 1.193500e-01

Joint ci ratio: 7.275203e-02	ci left: 8.501430e-02	ci right 9.146570e-02	k: 2646	n:30000
Cons ci ratio: 1.544004e-01	ci left: 1.940733e-02	ci right 2.268634e-02	k: 630	n:30000
KS ci ratio: 3.970806e-02	ci left: 2.403069e-01	ci right 2.500758e-01	k: 7355	n:30000
PAN3   30000 perm   7 sec   (4222 perm/sec)   p_kst 2.451667e-01   p_cons 2.100000e-02   p_joint 8.820000e-02

Joint ci ratio: 5.894691e-02	ci left: 9.660792e-02	ci right 1.025004e-01	k: 3981	n:40000
Cons ci ratio: 1.353119e-01	ci left: 1.915790e-02	ci right 2.196231e-02	k: 821	n:40000
KS ci ratio: 3.454690e-02	ci left: 2.392754e-01	ci right 2.477119e-01	k: 9739	n:40000
PAN3   40000 perm   10 sec   (4090 perm/sec)   p_kst 2.434750e-01   p_cons 2.052500e-02   p_joint 9.952500e-02

Joint ci ratio: 4.300038e-02	ci left: 1.394468e-01	ci right 1.455947e-01	k: 7125	n:50000
Cons ci ratio: 1.198123e-01	ci left: 1.970283e-02	ci right 2.223321e-02	k: 1047	n:50000
KS ci ratio: 3.101421e-02	ci left: 2.383703e-01	ci right 2.458996e-01	k: 12106	n:50000
PAN3   50000 perm   13 sec   (3992 perm/sec)   p_kst 2.421200e-01   p_cons 2.094000e-02   p_joint 1.425000e-01

Joint ci ratio: 4.146375e-02	ci left: 1.269553e-01	ci right 1.323473e-01	k: 7778	n:60000
Cons ci ratio: 1.097124e-01	ci left: 1.968918e-02	ci right 2.199083e-02	k: 1249	n:60000
KS ci ratio: 2.838857e-02	ci left: 2.377148e-01	ci right 2.445770e-01	k: 14468	n:60000
PAN3   60000 perm   15 sec   (3915 perm/sec)   p_kst 2.411333e-01   p_cons 2.081667e-02   p_joint 1.296333e-01

Joint ci ratio: 3.779335e-02	ci left: 1.306909e-01	ci right 1.357395e-01	k: 9324	n:70000
Cons ci ratio: 1.020155e-01	ci left: 1.960231e-02	ci right 2.172340e-02	k: 1445	n:70000
KS ci ratio: 2.630582e-02	ci left: 2.376505e-01	ci right 2.439996e-01	k: 16857	n:70000
PAN3   70000 perm   18 sec   (3841 perm/sec)   p_kst 2.408143e-01   p_cons 2.064286e-02   p_joint 1.332000e-01

Joint ci ratio: 3.567004e-02	ci left: 1.288180e-01	ci right 1.335088e-01	k: 10492	n:80000
Cons ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
KS ci ratio: 2.456175e-02	ci left: 2.385249e-01	ci right 2.444688e-01	k: 19319	n:80000
PAN3   80000 perm   21 sec   (3772 perm/sec)   p_kst 2.414875e-01   p_cons 2.022500e-02   p_joint 1.311500e-01

Outputting figure to mutsig2_images.part000000000125/PAN3.5_2740_80000_0.24149_0.020225_0.13115.png
                gene_name: PAN3
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 31 percent done.
PANX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
Cons ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
PANX1   10000 perm   2 sec   (5721 perm/sec)   p_kst 8.410000e-02   p_cons 3.533000e-01   p_joint 1.373000e-01

Joint ci ratio: 6.663696e-02	ci left: 1.425627e-01	ci right 1.524400e-01	k: 2949	n:20000
Cons ci ratio: 3.741166e-02	ci left: 3.477176e-01	ci right 3.610248e-01	k: 7087	n:20000
KS ci ratio: 9.159097e-02	ci left: 8.004448e-02	ci right 8.777699e-02	k: 1677	n:20000
PANX1   20000 perm   4 sec   (5009 perm/sec)   p_kst 8.385000e-02   p_cons 3.543500e-01   p_joint 1.474500e-01

Outputting figure to mutsig2_images.part000000000125/PANX1.5_1301_20000_0.08385_0.35435_0.14745.png
                gene_name: PANX1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
PAPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
PAPD7   10000 perm   2 sec   (5202 perm/sec)   p_kst 6.939000e-01   p_cons 6.780000e-02   p_joint 1.838000e-01

Joint ci ratio: 5.238263e-02	ci left: 2.129874e-01	ci right 2.244945e-01	k: 4374	n:20000
Cons ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
KS ci ratio: 1.839865e-02	ci left: 6.877113e-01	ci right 7.005322e-01	k: 13883	n:20000
PAPD7   20000 perm   4 sec   (4660 perm/sec)   p_kst 6.941500e-01   p_cons 6.970000e-02   p_joint 2.187000e-01

Joint ci ratio: 4.144108e-02	ci left: 2.249498e-01	ci right 2.345026e-01	k: 6891	n:30000
Cons ci ratio: 8.190635e-02	ci left: 6.802068e-02	ci right 7.386274e-02	k: 2127	n:30000
KS ci ratio: 1.505974e-02	ci left: 6.878459e-01	ci right 6.983167e-01	k: 20793	n:30000
PAPD7   30000 perm   7 sec   (4402 perm/sec)   p_kst 6.931000e-01   p_cons 7.090000e-02   p_joint 2.297000e-01

Outputting figure to mutsig2_images.part000000000125/PAPD7.5_1677_30000_0.6931_0.0709_0.2297.png
                gene_name: PAPD7
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 34 percent done.
PAPOLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
KS ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
PAPOLB   10000 perm   2 sec   (5226 perm/sec)   p_kst 3.255000e-01   p_cons 1.650000e-02   p_joint 7.660000e-02

Joint ci ratio: 1.117051e-01	ci left: 5.475129e-02	ci right 6.127794e-02	k: 1159	n:20000
Cons ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
KS ci ratio: 3.948245e-02	ci left: 3.235829e-01	ci right 3.366665e-01	k: 6602	n:20000
PAPOLB   20000 perm   4 sec   (4657 perm/sec)   p_kst 3.301000e-01   p_cons 1.670000e-02   p_joint 5.795000e-02

Joint ci ratio: 9.011304e-02	ci left: 5.665347e-02	ci right 6.203226e-02	k: 1779	n:30000
Cons ci ratio: 1.729605e-01	ci left: 1.537594e-02	ci right 1.831870e-02	k: 504	n:30000
KS ci ratio: 3.228715e-02	ci left: 3.241149e-01	ci right 3.347849e-01	k: 9883	n:30000
PAPOLB   30000 perm   7 sec   (4477 perm/sec)   p_kst 3.294333e-01   p_cons 1.680000e-02   p_joint 5.930000e-02

Joint ci ratio: 6.744464e-02	ci left: 7.524249e-02	ci right 8.051898e-02	k: 3114	n:40000
Cons ci ratio: 1.470722e-01	ci left: 1.616533e-02	ci right 1.875540e-02	k: 697	n:40000
KS ci ratio: 2.804662e-02	ci left: 3.234989e-01	ci right 3.327261e-01	k: 13124	n:40000
PAPOLB   40000 perm   9 sec   (4354 perm/sec)   p_kst 3.281000e-01   p_cons 1.742500e-02   p_joint 7.785000e-02

Joint ci ratio: 5.387006e-02	ci left: 9.317449e-02	ci right 9.835255e-02	k: 4787	n:50000
Cons ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
KS ci ratio: 2.505980e-02	ci left: 3.244431e-01	ci right 3.326968e-01	k: 16428	n:50000
PAPOLB   50000 perm   12 sec   (4257 perm/sec)   p_kst 3.285600e-01   p_cons 1.786000e-02   p_joint 9.574000e-02

Joint ci ratio: 6.114102e-02	ci left: 6.215296e-02	ci right 6.608933e-02	k: 3846	n:60000
Cons ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
KS ci ratio: 2.289262e-02	ci left: 3.244927e-01	ci right 3.320239e-01	k: 19695	n:60000
PAPOLB   60000 perm   14 sec   (4163 perm/sec)   p_kst 3.282500e-01   p_cons 1.911667e-02   p_joint 6.410000e-02

Joint ci ratio: 5.515037e-02	ci left: 6.545482e-02	ci right 6.918114e-02	k: 4711	n:70000
Cons ci ratio: 1.054158e-01	ci left: 1.834931e-02	ci right 2.040509e-02	k: 1355	n:70000
KS ci ratio: 2.112234e-02	ci left: 3.262744e-01	ci right 3.332540e-01	k: 23083	n:70000
PAPOLB   70000 perm   17 sec   (4080 perm/sec)   p_kst 3.297571e-01   p_cons 1.935714e-02   p_joint 6.730000e-02

Joint ci ratio: 5.395910e-02	ci left: 6.021514e-02	ci right 6.356672e-02	k: 4950	n:80000
Cons ci ratio: 9.477227e-02	ci left: 1.994431e-02	ci right 2.194065e-02	k: 1674	n:80000
KS ci ratio: 1.974179e-02	ci left: 3.268663e-01	ci right 3.333960e-01	k: 26410	n:80000
PAPOLB   80000 perm   20 sec   (4009 perm/sec)   p_kst 3.301250e-01   p_cons 2.092500e-02   p_joint 6.187500e-02

Outputting figure to mutsig2_images.part000000000125/PAPOLB.5_1918_80000_0.33013_0.020925_0.061875.png
                gene_name: PAPOLB
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 36 percent done.
P2RX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
KS ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
P2RX5   10000 perm   2 sec   (5294 perm/sec)   p_kst 6.880000e-02   p_cons 4.820000e-02   p_joint 4.820000e-02

Joint ci ratio: 1.161846e-01	ci left: 5.071313e-02	ci right 5.701737e-02	k: 1076	n:20000
Cons ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
KS ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
P2RX5   20000 perm   4 sec   (4803 perm/sec)   p_kst 6.560000e-02   p_cons 4.115000e-02   p_joint 5.380000e-02

Joint ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
Cons ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
KS ci ratio: 8.499966e-02	ci left: 6.337929e-02	ci right 6.903840e-02	k: 1985	n:30000
P2RX5   30000 perm   7 sec   (4567 perm/sec)   p_kst 6.616667e-02   p_cons 4.213333e-02   p_joint 2.923333e-02

Joint ci ratio: 1.130618e-01	ci left: 2.752316e-02	ci right 3.084566e-02	k: 1166	n:40000
Cons ci ratio: 9.381139e-02	ci left: 3.985957e-02	ci right 4.380730e-02	k: 1672	n:40000
KS ci ratio: 7.312536e-02	ci left: 6.456883e-02	ci right 6.949426e-02	k: 2680	n:40000
P2RX5   40000 perm   9 sec   (4440 perm/sec)   p_kst 6.700000e-02   p_cons 4.180000e-02   p_joint 2.915000e-02

Joint ci ratio: 9.196895e-02	ci left: 3.344528e-02	ci right 3.668899e-02	k: 1752	n:50000
Cons ci ratio: 8.679017e-02	ci left: 3.749614e-02	ci right 4.091762e-02	k: 1959	n:50000
KS ci ratio: 6.377112e-02	ci left: 6.801503e-02	ci right 7.251501e-02	k: 3512	n:50000
P2RX5   50000 perm   12 sec   (4325 perm/sec)   p_kst 7.024000e-02   p_cons 3.918000e-02   p_joint 3.504000e-02

Outputting figure to mutsig2_images.part000000000125/P2RX5.4_1321_50000_0.07024_0.03918_0.03504.png
                gene_name: P2RX5
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.037 

Current progress: 38 percent done.
P2RY12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 1.509535e-02	ci left: 8.641699e-01	ci right 8.774133e-01	k: 8709	n:10000
P2RY12   10000 perm   2 sec   (6645 perm/sec)   p_kst 8.709000e-01   p_cons 7.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/P2RY12.4_1033_10000_0.8709_0.7995_1.png
                gene_name: P2RY12
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
P4HB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
Cons ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
P4HB   10000 perm   2 sec   (5461 perm/sec)   p_kst 5.497000e-01   p_cons 6.296000e-01   p_joint 6.026000e-01

Outputting figure to mutsig2_images.part000000000125/P4HB.4_1571_10000_0.5497_0.6296_0.6026.png
                gene_name: P4HB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 41 percent done.
PABPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
PABPC1   10000 perm   2 sec   (5235 perm/sec)   p_kst 3.958000e-01   p_cons 6.380000e-01   p_joint 4.227000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1.4_1967_10000_0.3958_0.638_0.4227.png
                gene_name: PABPC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 43 percent done.
PACS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
PACS2   10000 perm   2 sec   (4717 perm/sec)   p_kst 3.683000e-01   p_cons 3.740000e-02   p_joint 2.546000e-01

Joint ci ratio: 7.101623e-02	ci left: 1.274853e-01	ci right 1.369219e-01	k: 2643	n:20000
Cons ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
KS ci ratio: 3.625498e-02	ci left: 3.621576e-01	ci right 3.755806e-01	k: 7377	n:20000
PACS2   20000 perm   5 sec   (4325 perm/sec)   p_kst 3.688500e-01   p_cons 4.010000e-02   p_joint 1.321500e-01

Joint ci ratio: 5.266836e-02	ci left: 1.517459e-01	ci right 1.599875e-01	k: 4675	n:30000
Cons ci ratio: 1.102047e-01	ci left: 3.823235e-02	ci right 4.272387e-02	k: 1213	n:30000
KS ci ratio: 2.955335e-02	ci left: 3.641673e-01	ci right 3.751246e-01	k: 11089	n:30000
PACS2   30000 perm   7 sec   (4143 perm/sec)   p_kst 3.696333e-01   p_cons 4.043333e-02   p_joint 1.558333e-01

Joint ci ratio: 5.387035e-02	ci left: 1.137420e-01	ci right 1.200637e-01	k: 4675	n:40000
Cons ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
KS ci ratio: 2.569814e-02	ci left: 3.630218e-01	ci right 3.724974e-01	k: 14710	n:40000
PACS2   40000 perm   10 sec   (4032 perm/sec)   p_kst 3.677500e-01   p_cons 4.130000e-02   p_joint 1.168750e-01

Outputting figure to mutsig2_images.part000000000125/PACS2.4_2778_40000_0.36775_0.0413_0.11688.png
                gene_name: PACS2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 44 percent done.
PADI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
KS ci ratio: 1.624279e-02	ci left: 8.464166e-01	ci right 8.603769e-01	k: 8535	n:10000
PADI2   10000 perm   2 sec   (5220 perm/sec)   p_kst 8.535000e-01   p_cons 7.731000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PADI2.4_2062_10000_0.8535_0.7731_1.png
                gene_name: PADI2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PADI6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
PADI6   10000 perm   2 sec   (5513 perm/sec)   p_kst 4.344000e-01   p_cons 8.412000e-01   p_joint 7.400000e-01

Outputting figure to mutsig2_images.part000000000125/PADI6.4_2150_10000_0.4344_0.8412_0.74.png
                gene_name: PADI6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 48 percent done.
PAIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
Cons ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
KS ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
PAIP1   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.750000e-02   p_cons 5.304000e-01   p_joint 6.710000e-02

Joint ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
Cons ci ratio: 2.675756e-02	ci left: 5.106476e-01	ci right 5.245472e-01	k: 10352	n:20000
KS ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
PAIP1   20000 perm   4 sec   (5165 perm/sec)   p_kst 4.720000e-02   p_cons 5.176000e-01   p_joint 7.635000e-02

Joint ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
Cons ci ratio: 2.190784e-02	ci left: 5.105604e-01	ci right 5.219031e-01	k: 15487	n:30000
KS ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
PAIP1   30000 perm   6 sec   (4933 perm/sec)   p_kst 4.493333e-02   p_cons 5.162333e-01   p_joint 5.063333e-02

Joint ci ratio: 7.334552e-02	ci left: 6.420023e-02	ci right 6.911291e-02	k: 2665	n:40000
Cons ci ratio: 1.892871e-02	ci left: 5.124894e-01	ci right 5.223080e-01	k: 20696	n:40000
KS ci ratio: 9.029144e-02	ci left: 4.296459e-02	ci right 4.705179e-02	k: 1799	n:40000
PAIP1   40000 perm   8 sec   (4783 perm/sec)   p_kst 4.497500e-02   p_cons 5.174000e-01   p_joint 6.662500e-02

Outputting figure to mutsig2_images.part000000000125/PAIP1.4_1484_40000_0.044975_0.5174_0.066625.png
                gene_name: PAIP1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 49 percent done.
PAK1IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
PAK1IP1   10000 perm   2 sec   (5417 perm/sec)   p_kst 9.791000e-01   p_cons 4.551000e-01   p_joint 8.799000e-01

Outputting figure to mutsig2_images.part000000000125/PAK1IP1.4_1219_10000_0.9791_0.4551_0.8799.png
                gene_name: PAK1IP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 51 percent done.
PAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
Cons ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
KS ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
PAM   10000 perm   2 sec   (4822 perm/sec)   p_kst 5.205000e-01   p_cons 7.878000e-01   p_joint 6.709000e-01

Outputting figure to mutsig2_images.part000000000125/PAM.4_3025_10000_0.5205_0.7878_0.6709.png
                gene_name: PAM
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 52 percent done.
PANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 6.145499e-03	ci left: 9.729141e-01	ci right 9.790043e-01	k: 9761	n:10000
PANK2   10000 perm   2 sec   (5342 perm/sec)   p_kst 9.761000e-01   p_cons 1.024000e-01   p_joint 4.261000e-01

Joint ci ratio: 2.875009e-02	ci left: 4.747532e-01	ci right 4.886521e-01	k: 9634	n:20000
Cons ci ratio: 8.036964e-02	ci left: 1.020117e-01	ci right 1.106031e-01	k: 2125	n:20000
KS ci ratio: 4.415154e-03	ci left: 9.730536e-01	ci right 9.774067e-01	k: 19506	n:20000
PANK2   20000 perm   4 sec   (4809 perm/sec)   p_kst 9.753000e-01   p_cons 1.062500e-01   p_joint 4.817000e-01

Outputting figure to mutsig2_images.part000000000125/PANK2.4_1741_20000_0.9753_0.10625_0.4817.png
                gene_name: PANK2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 54 percent done.
P2RY8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
KS ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
P2RY8   10000 perm   2 sec   (5926 perm/sec)   p_kst 9.036000e-01   p_cons 6.071000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/P2RY8.3_1084_10000_0.9036_0.6071_1.png
                gene_name: P2RY8
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
P4HA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
Cons ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
P4HA1   10000 perm   2 sec   (5579 perm/sec)   p_kst 7.940000e-02   p_cons 4.796000e-01   p_joint 6.100000e-02

Joint ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
Cons ci ratio: 2.889730e-02	ci left: 4.722050e-01	ci right 4.861011e-01	k: 9583	n:20000
KS ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
P4HA1   20000 perm   4 sec   (4947 perm/sec)   p_kst 8.140000e-02   p_cons 4.791500e-01   p_joint 7.235000e-02

Outputting figure to mutsig2_images.part000000000125/P4HA1.3_1736_20000_0.0814_0.47915_0.07235.png
                gene_name: P4HA1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 57 percent done.
PABPC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
Cons ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
KS ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
PABPC1L   10000 perm   2 sec   (5690 perm/sec)   p_kst 3.602000e-01   p_cons 2.620000e-02   p_joint 1.712000e-01

Joint ci ratio: 5.459327e-02	ci left: 1.993243e-01	ci right 2.105616e-01	k: 4098	n:20000
Cons ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
KS ci ratio: 3.727309e-02	ci left: 3.494102e-01	ci right 3.627317e-01	k: 7121	n:20000
PABPC1L   20000 perm   4 sec   (5076 perm/sec)   p_kst 3.560500e-01   p_cons 2.625000e-02   p_joint 2.049000e-01

Joint ci ratio: 3.991294e-02	ci left: 2.384199e-01	ci right 2.481632e-01	k: 7298	n:30000
Cons ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
KS ci ratio: 3.023526e-02	ci left: 3.536353e-01	ci right 3.645253e-01	k: 10772	n:30000
PABPC1L   30000 perm   6 sec   (4840 perm/sec)   p_kst 3.590667e-01   p_cons 2.720000e-02   p_joint 2.432667e-01

Joint ci ratio: 4.109059e-02	ci left: 1.815276e-01	ci right 1.891681e-01	k: 7413	n:40000
Cons ci ratio: 1.186794e-01	ci left: 2.497221e-02	ci right 2.814703e-02	k: 1061	n:40000
KS ci ratio: 2.637040e-02	ci left: 3.511313e-01	ci right 3.605396e-01	k: 14233	n:40000
PABPC1L   40000 perm   9 sec   (4686 perm/sec)   p_kst 3.558250e-01   p_cons 2.652500e-02   p_joint 1.853250e-01

Joint ci ratio: 2.656471e-02	ci left: 2.993321e-01	ci right 3.074108e-01	k: 15168	n:50000
Cons ci ratio: 1.052778e-01	ci left: 2.555784e-02	ci right 2.841743e-02	k: 1348	n:50000
KS ci ratio: 2.354067e-02	ci left: 3.525196e-01	ci right 3.609370e-01	k: 17836	n:50000
PABPC1L   50000 perm   11 sec   (4535 perm/sec)   p_kst 3.567200e-01   p_cons 2.696000e-02   p_joint 3.033600e-01

Joint ci ratio: 2.379119e-02	ci left: 3.077953e-01	ci right 3.152229e-01	k: 18690	n:60000
Cons ci ratio: 9.619074e-02	ci left: 2.563629e-02	ci right 2.824307e-02	k: 1615	n:60000
KS ci ratio: 2.147041e-02	ci left: 3.532980e-01	ci right 3.609825e-01	k: 21428	n:60000
PABPC1L   60000 perm   14 sec   (4416 perm/sec)   p_kst 3.571333e-01   p_cons 2.691667e-02   p_joint 3.115000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1L.3_1901_60000_0.35713_0.026917_0.3115.png
                gene_name: PABPC1L
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 59 percent done.
PACSIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
Cons ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
KS ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
PACSIN1   10000 perm   2 sec   (6076 perm/sec)   p_kst 8.429000e-01   p_cons 3.380000e-02   p_joint 2.612000e-01

Joint ci ratio: 4.471443e-02	ci left: 2.713518e-01	ci right 2.838130e-01	k: 5551	n:20000
Cons ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
KS ci ratio: 1.192206e-02	ci left: 8.387949e-01	ci right 8.489049e-01	k: 16878	n:20000
PACSIN1   20000 perm   4 sec   (5358 perm/sec)   p_kst 8.439000e-01   p_cons 2.990000e-02   p_joint 2.775500e-01

Joint ci ratio: 4.368989e-02	ci left: 2.069234e-01	ci right 2.161992e-01	k: 6346	n:30000
Cons ci ratio: 1.186022e-01	ci left: 3.304597e-02	ci right 3.724468e-02	k: 1053	n:30000
KS ci ratio: 9.768592e-03	ci left: 8.387998e-01	ci right 8.470671e-01	k: 25289	n:30000
PACSIN1   30000 perm   6 sec   (5067 perm/sec)   p_kst 8.429667e-01   p_cons 3.510000e-02   p_joint 2.115333e-01

Joint ci ratio: 3.173862e-02	ci left: 2.716730e-01	ci right 2.804596e-01	k: 11042	n:40000
Cons ci ratio: 1.034141e-01	ci left: 3.287904e-02	ci right 3.648892e-02	k: 1386	n:40000
KS ci ratio: 8.475475e-03	ci left: 8.388676e-01	ci right 8.460326e-01	k: 33699	n:40000
PACSIN1   40000 perm   8 sec   (4892 perm/sec)   p_kst 8.424750e-01   p_cons 3.465000e-02   p_joint 2.760500e-01

Joint ci ratio: 3.016140e-02	ci left: 2.486964e-01	ci right 2.563323e-01	k: 12625	n:50000
Cons ci ratio: 9.221455e-02	ci left: 3.326929e-02	ci right 3.650500e-02	k: 1743	n:50000
KS ci ratio: 7.555365e-03	ci left: 8.401443e-01	ci right 8.465358e-01	k: 42168	n:50000
PACSIN1   50000 perm   11 sec   (4754 perm/sec)   p_kst 8.433600e-01   p_cons 3.486000e-02   p_joint 2.525000e-01

Outputting figure to mutsig2_images.part000000000125/PACSIN1.3_1371_50000_0.84336_0.03486_0.2525.png
                gene_name: PACSIN1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 61 percent done.
PADI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
PADI1   10000 perm   2 sec   (5982 perm/sec)   p_kst 9.339000e-01   p_cons 3.888000e-01   p_joint 6.638000e-01

Outputting figure to mutsig2_images.part000000000125/PADI1.3_2056_10000_0.9339_0.3888_0.6638.png
                gene_name: PADI1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 62 percent done.
PADI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KS ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
PADI3   10000 perm   2 sec   (5664 perm/sec)   p_kst 7.294000e-01   p_cons 6.022000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PADI3.3_2059_10000_0.7294_0.6022_1.png
                gene_name: PADI3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
PADI4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
Cons ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
KS ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
PADI4   10000 perm   2 sec   (5372 perm/sec)   p_kst 8.114000e-01   p_cons 3.207000e-01   p_joint 6.938000e-01

Outputting figure to mutsig2_images.part000000000125/PADI4.3_2056_10000_0.8114_0.3207_0.6938.png
                gene_name: PADI4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 66 percent done.
PAG1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KS ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
PAG1   10000 perm   2 sec   (6492 perm/sec)   p_kst 7.346000e-01   p_cons 6.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAG1.2_1323_10000_0.7346_0.622_1.png
                gene_name: PAG1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
PAH   10000 perm   2 sec   (6424 perm/sec)   p_kst 3.756000e-01   p_cons 1.499000e-01   p_joint 4.248000e-01

Outputting figure to mutsig2_images.part000000000125/PAH.3_1411_10000_0.3756_0.1499_0.4248.png
                gene_name: PAH
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 69 percent done.
PAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
PAK2   10000 perm   2 sec   (6119 perm/sec)   p_kst 5.918000e-01   p_cons 3.496000e-01   p_joint 5.565000e-01

Outputting figure to mutsig2_images.part000000000125/PAK2.3_1631_10000_0.5918_0.3496_0.5565.png
                gene_name: PAK2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 70 percent done.
PAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
KS ci ratio: 1.196764e-02	ci left: 9.091566e-01	ci right 9.202004e-01	k: 9148	n:10000
PAN2   10000 perm   2 sec   (4646 perm/sec)   p_kst 9.148000e-01   p_cons 9.549000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAN2.3_3709_10000_0.9148_0.9549_1.png
                gene_name: PAN2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PAOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
PAOX   10000 perm   2 sec   (6214 perm/sec)   p_kst 1.052000e-01   p_cons 1.579000e-01   p_joint 9.730000e-02

Joint ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
Cons ci ratio: 6.430145e-02	ci left: 1.516378e-01	ci right 1.617622e-01	k: 3133	n:20000
KS ci ratio: 7.908526e-02	ci left: 1.050569e-01	ci right 1.137570e-01	k: 2187	n:20000
PAOX   20000 perm   4 sec   (5471 perm/sec)   p_kst 1.093500e-01   p_cons 1.566500e-01   p_joint 1.095000e-01

Outputting figure to mutsig2_images.part000000000125/PAOX.3_1647_20000_0.10935_0.15665_0.1095.png
                gene_name: PAOX
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 74 percent done.
PAPLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
Cons ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
PAPLN   10000 perm   2 sec   (4564 perm/sec)   p_kst 7.100000e-02   p_cons 2.319000e-01   p_joint 1.229000e-01

Joint ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
Cons ci ratio: 5.043167e-02	ci left: 2.261147e-01	ci right 2.378633e-01	k: 4639	n:20000
KS ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
PAPLN   20000 perm   5 sec   (4157 perm/sec)   p_kst 7.270000e-02   p_cons 2.319500e-01   p_joint 9.335000e-02

Outputting figure to mutsig2_images.part000000000125/PAPLN.3_3856_20000_0.0727_0.23195_0.09335.png
                gene_name: PAPLN
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 75 percent done.
P2RY14
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 77 percent done.
P4HA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
Cons ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
P4HA2   10000 perm   2 sec   (6054 perm/sec)   p_kst 4.829000e-01   p_cons 3.472000e-01   p_joint 8.030000e-01

Outputting figure to mutsig2_images.part000000000125/P4HA2.2_1728_10000_0.4829_0.3472_0.803.png
                gene_name: P4HA2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 79 percent done.
P4HA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
Cons ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
KS ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
P4HA3   10000 perm   2 sec   (5964 perm/sec)   p_kst 3.908000e-01   p_cons 1.088000e-01   p_joint 1.100000e-01

Joint ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
Cons ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
KS ci ratio: 3.445949e-02	ci left: 3.860226e-01	ci right 3.996086e-01	k: 7856	n:20000
P4HA3   20000 perm   4 sec   (5296 perm/sec)   p_kst 3.928000e-01   p_cons 1.077500e-01   p_joint 1.095000e-01

Outputting figure to mutsig2_images.part000000000125/P4HA3.2_1687_20000_0.3928_0.10775_0.1095.png
                gene_name: P4HA3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 80 percent done.
PA2G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
PA2G4   10000 perm   2 sec   (6195 perm/sec)   p_kst 5.810000e-02   p_cons 4.090000e-01   p_joint 3.017000e-01

Joint ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
Cons ci ratio: 3.329607e-02	ci left: 4.024740e-01	ci right 4.161523e-01	k: 8186	n:20000
KS ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
PA2G4   20000 perm   4 sec   (4970 perm/sec)   p_kst 5.675000e-02   p_cons 4.093000e-01   p_joint 7.845000e-02

Joint ci ratio: 5.034691e-02	ci left: 1.638510e-01	ci right 1.723467e-01	k: 5042	n:30000
Cons ci ratio: 2.727337e-02	ci left: 4.021983e-01	ci right 4.133529e-01	k: 12233	n:30000
KS ci ratio: 9.182534e-02	ci left: 5.463110e-02	ci right 5.992171e-02	k: 1717	n:30000
PA2G4   30000 perm   6 sec   (4853 perm/sec)   p_kst 5.723333e-02   p_cons 4.077667e-01   p_joint 1.680667e-01

Outputting figure to mutsig2_images.part000000000125/PA2G4.2_1237_30000_0.057233_0.40777_0.16807.png
                gene_name: PA2G4
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 82 percent done.
PACRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
Cons ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
KS ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
PACRG   10000 perm   2 sec   (6406 perm/sec)   p_kst 5.320000e-01   p_cons 5.789000e-01   p_joint 4.833000e-01

Outputting figure to mutsig2_images.part000000000125/PACRG.2_915_10000_0.532_0.5789_0.4833.png
                gene_name: PACRG
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 84 percent done.
PACS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
PACS1   10000 perm   2 sec   (5465 perm/sec)   p_kst 3.462000e-01   p_cons 2.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PACS1.2_2988_10000_0.3462_0.2567_1.png
                gene_name: PACS1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PACSIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
Cons ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
PACSIN3   10000 perm   2 sec   (6444 perm/sec)   p_kst 1.365000e-01   p_cons 3.507000e-01   p_joint 3.941000e-01

Outputting figure to mutsig2_images.part000000000125/PACSIN3.2_1311_10000_0.1365_0.3507_0.3941.png
                gene_name: PACSIN3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 87 percent done.
PAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
PAF1   10000 perm   2 sec   (5989 perm/sec)   p_kst 6.484000e-01   p_cons 1.573000e-01   p_joint 9.883000e-01

Outputting figure to mutsig2_images.part000000000125/PAF1.2_1652_10000_0.6484_0.1573_0.9883.png
                gene_name: PAF1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
PAFAH1B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
KS ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
PAFAH1B2   10000 perm   1 sec   (6758 perm/sec)   p_kst 3.457000e-01   p_cons 3.537000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAFAH1B2.2_926_10000_0.3457_0.3537_1.png
                gene_name: PAFAH1B2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PAGE2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 92 percent done.
PAGE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
KS ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
PAGE2B   10000 perm   1 sec   (7180 perm/sec)   p_kst 8.513000e-01   p_cons 6.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAGE2B.2_352_10000_0.8513_0.6463_1.png
                gene_name: PAGE2B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PAIP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
Cons ci ratio: 9.375324e-02	ci left: 1.417796e-01	ci right 1.558256e-01	k: 1487	n:10000
KS ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
PAIP2B   10000 perm   1 sec   (6846 perm/sec)   p_kst 8.590000e-01   p_cons 1.487000e-01   p_joint 8.916000e-01

Outputting figure to mutsig2_images.part000000000125/PAIP2B.2_384_10000_0.859_0.1487_0.8916.png
                gene_name: PAIP2B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 95 percent done.
PANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
PANK1   10000 perm   2 sec   (5789 perm/sec)   p_kst 6.401000e-01   p_cons 5.710000e-02   p_joint 1

Joint ci ratio: 3.671888e-03	ci left: 9.809013e-01	ci right 9.845565e-01	k: 19656	n:20000
Cons ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
KS ci ratio: 2.083991e-02	ci left: 6.321482e-01	ci right 6.455114e-01	k: 12777	n:20000
PANK1   20000 perm   4 sec   (5139 perm/sec)   p_kst 6.388500e-01   p_cons 5.885000e-02   p_joint 9.828000e-01

Joint ci ratio: 2.987876e-03	ci left: 9.813686e-01	ci right 9.843368e-01	k: 29487	n:30000
Cons ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
KS ci ratio: 1.694414e-02	ci left: 6.353409e-01	ci right 6.462318e-01	k: 19224	n:30000
PANK1   30000 perm   6 sec   (4897 perm/sec)   p_kst 6.408000e-01   p_cons 5.893333e-02   p_joint 9.829000e-01

Outputting figure to mutsig2_images.part000000000125/PANK1.2_1857_30000_0.6408_0.058933_0.9829.png
                gene_name: PANK1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
PANK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
PANK3   10000 perm   2 sec   (6320 perm/sec)   p_kst 2.257000e-01   p_cons 8.787000e-01   p_joint 8.129000e-01

Outputting figure to mutsig2_images.part000000000125/PANK3.2_1141_10000_0.2257_0.8787_0.8129.png
                gene_name: PANK3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 98 percent done.
PANX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
PANX3   10000 perm   2 sec   (6088 perm/sec)   p_kst 2.808000e-01   p_cons 1.090000e-01   p_joint 1.290000e-01

Joint ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
Cons ci ratio: 8.555098e-02	ci left: 9.092137e-02	ci right 9.909681e-02	k: 1899	n:20000
KS ci ratio: 4.427265e-02	ci left: 2.753239e-01	ci right 2.878396e-01	k: 5631	n:20000
PANX3   20000 perm   4 sec   (5493 perm/sec)   p_kst 2.815500e-01   p_cons 9.495000e-02   p_joint 1.212500e-01

Outputting figure to mutsig2_images.part000000000125/PANX3.2_1195_20000_0.28155_0.09495_0.12125.png
                gene_name: PANX3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000125
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 125 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 4422286: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000126> was used as the working directory.
Started at Wed Oct 24 18:02:21 2012
Results reported at Wed Oct 24 18:43:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000126.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000126.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 126  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000126.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2808.57 sec.
    Max Memory :      5306 MB
    Max Swap   :      7633 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
126
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 126
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 126: processing genes 11310 - 11399
Calculating significance of each gene.
Using projection method.
11310	PAPSS1	6.788464e-01
11311	PAPSS2	8.786901e-01
11312	PAQR3	2.803083e-01
11313	PAQR4	1
11314	PAQR5	1
11315	PAQR6	8.502608e-01
11316	PAQR7	7.872968e-01
11317	PAQR8	3.320462e-01
11318	PAQR9	5.655487e-01
11319	PARD3	9.976141e-01
11320	PARD3B	8.141060e-01
11321	PARD6A	1
11322	PARD6B	3.156579e-01
11323	PARD6G	1
11324	PARK2	7.277798e-02
11325	PARK7	1
11326	PARL	6.257442e-01
11327	PARM1	4.922574e-01
11328	PARN	1
11329	PARP1	1
11330	PARP10	1
11331	PARP11	7.655088e-01
11332	PARP12	9.877834e-01
11333	PARP14	8.223352e-01
11334	PARP15	3.929412e-01
11335	PARP16	1
11336	PARP2	8.171906e-01
11337	PARP3	2.735667e-01
11338	PARP4	9.538421e-01
11339	PARP6	9.374548e-01
11340	PARP8	3.619322e-01
11341	PARP9	3.485775e-01
11342	PARS2	9.489541e-01
11343	PARVA	3.949324e-01
11344	PARVB	1
11345	PARVG	5.944162e-01
11346	PASD1	2.895710e-02
11347	PASK	9.991594e-01
In gene PATE1 the following bins exceed PROBCAP:
    LUAD-17-Z056-TP	categ 6	N = 401     n = 1	mu =   1.74e-06
11348	PATE1	2.287807e-02
11349	PATE2	1
In gene PATL1 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 1716    n = 1	mu =   3.01e-07
11350	PATL1	8.286222e-01
11351	PATZ1	7.678726e-01
11352	PAWR	1.035604e-01
11353	PAX1	2.661699e-02
11354	PAX2	6.316029e-02
11355	PAX3	1.865458e-01
11356	PAX4	1
11357	PAX5	5.572669e-01
11358	PAX6	8.465184e-01
11359	PAX7	8.364504e-01
11360	PAX8	1
11361	PAX9	1
11362	PAXIP1	9.498703e-01
11363	PBK	1
11364	PBLD	4.621337e-01
11365	PBOV1	1
11366	PBRM1	9.886359e-01
11367	PBX1	4.902821e-01
In gene PBX2 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1181    n = 1	mu =   5.35e-07
11368	PBX2	5.497708e-02
11369	PBX3	8.390168e-01
11370	PBX4	1
11371	PBXIP1	8.222301e-01
11372	PC	1
11373	PCBD1	1
11374	PCBD2	1
11375	PCBP1	8.176854e-01
11376	PCBP2	7.732383e-01
11377	PCBP3	2.893827e-01
11378	PCBP4	7.447243e-01
11379	PCCA	5.020053e-01
11380	PCCB	8.286823e-01
11381	PCDH1	8.309300e-01
11382	PCDH10	1
11383	PCDH11X	1.207075e-03
11384	PCDH11Y	3.800976e-01
11385	PCDH12	1
11386	PCDH15	1
11387	PCDH17	1
11388	PCDH18	5.270593e-03
11389	PCDH19	6.541498e-01
11390	PCDH20	2.258792e-01
11391	PCDH7	9.844160e-01
11392	PCDH8	2.147193e-02
11393	PCDH9	9.770019e-01
11394	PCDHA1	3.924960e-01
11395	PCDHA10	3.592777e-01
11396	PCDHA11	9.772933e-01
11397	PCDHA12	9.935974e-01
11398	PCDHA13	1
11399	PCDHA2	3.122975e-01
Done

Running MutSig 2:
Scatter job 126: processing genes 11310 - 11399
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCDH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
KS ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
PCDH15   10000 perm   5 sec   (2080 perm/sec)   p_kst 6.941000e-01   p_cons 4.411000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH15.52_7659_10000_0.6941_0.4411_0.7897.png
                gene_name: PCDH15
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 1 percent done.
PCDH11X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
Cons ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
KS ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
PCDH11X   10000 perm   3 sec   (2898 perm/sec)   p_kst 2.222000e-01   p_cons 2.967000e-01   p_joint 3.682000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH11X.47_4194_10000_0.2222_0.2967_0.3682.png
                gene_name: PCDH11X
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 3 percent done.
PCDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
Cons ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
KS ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
PCDH17   10000 perm   3 sec   (3320 perm/sec)   p_kst 4.868000e-01   p_cons 4.910000e-02   p_joint 8.010000e-02

Joint ci ratio: 7.106269e-02	ci left: 1.273376e-01	ci right 1.367697e-01	k: 2640	n:20000
Cons ci ratio: 1.195665e-01	ci left: 4.794292e-02	ci right 5.408845e-02	k: 1019	n:20000
KS ci ratio: 2.865240e-02	ci left: 4.764521e-01	ci right 4.903527e-01	k: 9668	n:20000
PCDH17   20000 perm   6 sec   (3102 perm/sec)   p_kst 4.834000e-01   p_cons 5.095000e-02   p_joint 1.320000e-01

Joint ci ratio: 6.020902e-02	ci left: 1.200601e-01	ci right 1.275463e-01	k: 3713	n:30000
Cons ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
KS ci ratio: 2.326909e-02	ci left: 4.804292e-01	ci right 4.917735e-01	k: 14583	n:30000
PCDH17   30000 perm   10 sec   (3028 perm/sec)   p_kst 4.861000e-01   p_cons 5.063333e-02   p_joint 1.237667e-01

Outputting figure to mutsig2_images.part000000000126/PCDH17.31_3496_30000_0.4861_0.050633_0.12377.png
                gene_name: PCDH17
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
PCDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
Cons ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
KS ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
PCDH10   10000 perm   3 sec   (3504 perm/sec)   p_kst 6.576000e-01   p_cons 9.021000e-01   p_joint 9.165000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH10.28_3203_10000_0.6576_0.9021_0.9165.png
                gene_name: PCDH10
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 6 percent done.
PARD3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
PARD3B   10000 perm   3 sec   (3460 perm/sec)   p_kst 4.222000e-01   p_cons 1.660000e-02   p_joint 8.650000e-02

Joint ci ratio: 9.833821e-02	ci left: 6.996946e-02	ci right 7.725509e-02	k: 1471	n:20000
Cons ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
KS ci ratio: 3.172259e-02	ci left: 4.260183e-01	ci right 4.398012e-01	k: 8658	n:20000
PARD3B   20000 perm   6 sec   (3238 perm/sec)   p_kst 4.329000e-01   p_cons 1.335000e-02   p_joint 7.355000e-02

Joint ci ratio: 8.438700e-02	ci left: 6.426150e-02	ci right 6.995601e-02	k: 2012	n:30000
Cons ci ratio: 1.984924e-01	ci left: 1.155866e-02	ci right 1.413697e-02	k: 384	n:30000
KS ci ratio: 2.585297e-02	ci left: 4.282151e-01	ci right 4.394644e-01	k: 13015	n:30000
PARD3B   30000 perm   10 sec   (3116 perm/sec)   p_kst 4.338333e-01   p_cons 1.280000e-02   p_joint 6.706667e-02

Joint ci ratio: 7.635038e-02	ci left: 5.945966e-02	ci right 6.420420e-02	k: 2472	n:40000
Cons ci ratio: 1.735050e-01	ci left: 1.150599e-02	ci right 1.371561e-02	k: 503	n:40000
KS ci ratio: 2.247685e-02	ci left: 4.270633e-01	ci right 4.367966e-01	k: 17277	n:40000
PARD3B   40000 perm   13 sec   (3031 perm/sec)   p_kst 4.319250e-01   p_cons 1.257500e-02   p_joint 6.180000e-02

Joint ci ratio: 7.566840e-02	ci left: 4.900922e-02	ci right 5.288313e-02	k: 2546	n:50000
Cons ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
KS ci ratio: 2.015846e-02	ci left: 4.262539e-01	ci right 4.349541e-01	k: 21530	n:50000
PARD3B   50000 perm   17 sec   (2963 perm/sec)   p_kst 4.306000e-01   p_cons 1.282000e-02   p_joint 5.092000e-02

Joint ci ratio: 5.713330e-02	ci left: 7.066772e-02	ci right 7.484039e-02	k: 4364	n:60000
Cons ci ratio: 1.261697e-01	ci left: 1.483349e-02	ci right 1.684707e-02	k: 949	n:60000
KS ci ratio: 1.842597e-02	ci left: 4.260005e-01	ci right 4.339396e-01	k: 25798	n:60000
PARD3B   60000 perm   21 sec   (2911 perm/sec)   p_kst 4.299667e-01   p_cons 1.581667e-02   p_joint 7.273333e-02

Joint ci ratio: 5.682353e-02	ci left: 6.184543e-02	ci right 6.547656e-02	k: 4455	n:70000
Cons ci ratio: 1.176949e-01	ci left: 1.468110e-02	ci right 1.653080e-02	k: 1091	n:70000
KS ci ratio: 1.729983e-02	ci left: 4.194505e-01	ci right 4.267845e-01	k: 29618	n:70000
PARD3B   70000 perm   24 sec   (2862 perm/sec)   p_kst 4.231143e-01   p_cons 1.558571e-02   p_joint 6.364286e-02

Joint ci ratio: 5.347148e-02	ci left: 6.126428e-02	ci right 6.464250e-02	k: 5035	n:80000
Cons ci ratio: 1.095597e-01	ci left: 1.488641e-02	ci right 1.662397e-02	k: 1259	n:80000
KS ci ratio: 1.615489e-02	ci left: 4.205221e-01	ci right 4.273834e-01	k: 33916	n:80000
PARD3B   80000 perm   28 sec   (2824 perm/sec)   p_kst 4.239500e-01   p_cons 1.573750e-02   p_joint 6.293750e-02

Joint ci ratio: 5.307601e-02	ci left: 5.562573e-02	ci right 5.866956e-02	k: 5142	n:90000
Cons ci ratio: 1.034609e-01	ci left: 1.488710e-02	ci right 1.652211e-02	k: 1412	n:90000
KS ci ratio: 1.523500e-02	ci left: 4.205907e-01	ci right 4.270587e-01	k: 38144	n:90000
PARD3B   90000 perm   32 sec   (2788 perm/sec)   p_kst 4.238222e-01   p_cons 1.568889e-02   p_joint 5.713333e-02

Joint ci ratio: 5.142745e-02	ci left: 5.349613e-02	ci right 5.632976e-02	k: 5490	n:100000
Cons ci ratio: 9.872828e-02	ci left: 1.475320e-02	ci right 1.629509e-02	k: 1551	n:100000
KS ci ratio: 1.445595e-02	ci left: 4.206645e-01	ci right 4.267999e-01	k: 42373	n:100000
PARD3B   100000 perm   36 sec   (2753 perm/sec)   p_kst 4.237300e-01   p_cons 1.551000e-02   p_joint 5.490000e-02

Outputting figure to mutsig2_images.part000000000126/PARD3B.18_3710_100000_0.42373_0.01551_0.0549.png
                gene_name: PARD3B
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 7 percent done.
PCDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
Cons ci ratio: 2.965940e-02	ci left: 6.263806e-01	ci right 6.453402e-01	k: 6359	n:10000
KS ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
PCDH18   10000 perm   2 sec   (4022 perm/sec)   p_kst 5.108000e-01   p_cons 6.359000e-01   p_joint 6.730000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH18.17_3424_10000_0.5108_0.6359_0.673.png
                gene_name: PCDH18
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 9 percent done.
PCDH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
Cons ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
KS ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
PCDH9   10000 perm   2 sec   (4046 perm/sec)   p_kst 8.499000e-01   p_cons 1.063000e-01   p_joint 2.883000e-01

Joint ci ratio: 3.987398e-02	ci left: 3.192556e-01	ci right 3.322951e-01	k: 6515	n:20000
Cons ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
KS ci ratio: 1.149610e-02	ci left: 8.482696e-01	ci right 8.581275e-01	k: 17065	n:20000
PCDH9   20000 perm   5 sec   (3651 perm/sec)   p_kst 8.532500e-01   p_cons 1.241000e-01   p_joint 3.257500e-01

Outputting figure to mutsig2_images.part000000000126/PCDH9.16_3730_20000_0.85325_0.1241_0.32575.png
                gene_name: PCDH9
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 10 percent done.
PCDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
KS ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
PCDHA1   10000 perm   2 sec   (4173 perm/sec)   p_kst 1.099000e-01   p_cons 9.449000e-01   p_joint 2.702000e-01

Joint ci ratio: 4.580958e-02	ci left: 2.618210e-01	ci right 2.741465e-01	k: 5359	n:20000
Cons ci ratio: 6.810751e-03	ci left: 9.397996e-01	ci right 9.462709e-01	k: 18862	n:20000
KS ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
PCDHA1   20000 perm   5 sec   (3772 perm/sec)   p_kst 1.114000e-01   p_cons 9.431000e-01   p_joint 2.679500e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA1.15_2899_20000_0.1114_0.9431_0.26795.png
                gene_name: PCDHA1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 12 percent done.
PCDHA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
Cons ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
PCDHA11   10000 perm   2 sec   (4468 perm/sec)   p_kst 1.240000e-02   p_cons 8.371000e-01   p_joint 4.470000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 1.237363e-02	ci left: 8.286180e-01	ci right 8.389847e-01	k: 16677	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
PCDHA11   20000 perm   5 sec   (3955 perm/sec)   p_kst 1.220000e-02   p_cons 8.338500e-01   p_joint 3.690000e-02

Joint ci ratio: 1.131511e-01	ci left: 3.628610e-02	ci right 4.067052e-02	k: 1153	n:30000
Cons ci ratio: 1.005118e-02	ci left: 8.310201e-01	ci right 8.394482e-01	k: 25058	n:30000
KS ci ratio: 2.033636e-01	ci left: 1.098852e-02	ci right 1.350727e-02	k: 366	n:30000
PCDHA11   30000 perm   8 sec   (3734 perm/sec)   p_kst 1.220000e-02   p_cons 8.352667e-01   p_joint 3.843333e-02

Joint ci ratio: 8.577258e-02	ci left: 4.749255e-02	ci right 5.177313e-02	k: 1984	n:40000
Cons ci ratio: 8.757168e-03	ci left: 8.299135e-01	ci right 8.372380e-01	k: 33344	n:40000
KS ci ratio: 1.776565e-01	ci left: 1.095598e-02	ci right 1.311572e-02	k: 480	n:40000
PCDHA11   40000 perm   11 sec   (3612 perm/sec)   p_kst 1.200000e-02   p_cons 8.336000e-01   p_joint 4.960000e-02

Joint ci ratio: 8.552637e-02	ci left: 3.859295e-02	ci right 4.206068e-02	k: 2015	n:50000
Cons ci ratio: 7.848418e-03	ci left: 8.297418e-01	ci right 8.362995e-01	k: 41652	n:50000
KS ci ratio: 1.612591e-01	ci left: 1.073749e-02	ci right 1.263984e-02	k: 583	n:50000
PCDHA11   50000 perm   14 sec   (3530 perm/sec)   p_kst 1.166000e-02   p_cons 8.330400e-01   p_joint 4.030000e-02

Joint ci ratio: 7.668471e-02	ci left: 4.013070e-02	ci right 4.334715e-02	k: 2503	n:60000
Cons ci ratio: 7.198197e-03	ci left: 8.287156e-01	ci right 8.347190e-01	k: 49904	n:60000
KS ci ratio: 1.494697e-01	ci left: 1.048566e-02	ci right 1.219543e-02	k: 679	n:60000
PCDHA11   60000 perm   17 sec   (3456 perm/sec)   p_kst 1.131667e-02   p_cons 8.317333e-01   p_joint 4.171667e-02

Joint ci ratio: 7.513617e-02	ci left: 3.602050e-02	ci right 3.884658e-02	k: 2619	n:70000
Cons ci ratio: 6.676915e-03	ci left: 8.284043e-01	ci right 8.339682e-01	k: 58184	n:70000
KS ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
PCDHA11   70000 perm   21 sec   (3396 perm/sec)   p_kst 1.145714e-02   p_cons 8.312000e-01   p_joint 3.741429e-02

Joint ci ratio: 7.077964e-02	ci left: 3.561653e-02	ci right 3.824219e-02	k: 2953	n:80000
Cons ci ratio: 6.244560e-03	ci left: 8.286364e-01	ci right 8.338395e-01	k: 66500	n:80000
KS ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
PCDHA11   80000 perm   24 sec   (3335 perm/sec)   p_kst 1.146250e-02   p_cons 8.312500e-01   p_joint 3.691250e-02

Joint ci ratio: 6.008601e-02	ci left: 4.379714e-02	ci right 4.652117e-02	k: 4063	n:90000
Cons ci ratio: 5.905015e-03	ci left: 8.279432e-01	ci right 8.328577e-01	k: 74737	n:90000
KS ci ratio: 1.201497e-01	ci left: 1.098613e-02	ci right 1.240117e-02	k: 1051	n:90000
PCDHA11   90000 perm   27 sec   (3280 perm/sec)   p_kst 1.167778e-02   p_cons 8.304111e-01   p_joint 4.514444e-02

Joint ci ratio: 5.286918e-02	ci left: 5.073064e-02	ci right 5.349541e-02	k: 5210	n:100000
Cons ci ratio: 5.301084e-03	ci left: 8.431443e-01	ci right 8.476357e-01	k: 84540	n:100000
KS ci ratio: 1.132941e-01	ci left: 1.115934e-02	ci right 1.250919e-02	k: 1182	n:100000
PCDHA11   100000 perm   31 sec   (3227 perm/sec)   p_kst 1.182000e-02   p_cons 8.454000e-01   p_joint 5.210000e-02

Joint ci ratio: 5.199814e-02	ci left: 4.784840e-02	ci right 5.041180e-02	k: 5403	n:110000
Cons ci ratio: 5.055786e-03	ci left: 8.431768e-01	ci right 8.474595e-01	k: 92986	n:110000
KS ci ratio: 1.084145e-01	ci left: 1.110828e-02	ci right 1.239038e-02	k: 1291	n:110000
PCDHA11   110000 perm   35 sec   (3175 perm/sec)   p_kst 1.173636e-02   p_cons 8.453273e-01   p_joint 4.911818e-02

Joint ci ratio: 5.073411e-02	ci left: 4.618805e-02	ci right 4.860055e-02	k: 5686	n:120000
Cons ci ratio: 4.834258e-03	ci left: 8.436101e-01	ci right 8.477065e-01	k: 101480	n:120000
KS ci ratio: 1.040403e-01	ci left: 1.108301e-02	ci right 1.230743e-02	k: 1402	n:120000
PCDHA11   120000 perm   38 sec   (3127 perm/sec)   p_kst 1.168333e-02   p_cons 8.456667e-01   p_joint 4.738333e-02

Joint ci ratio: 5.224983e-02	ci left: 4.041463e-02	ci right 4.259050e-02	k: 5394	n:130000
Cons ci ratio: 4.649756e-03	ci left: 8.434000e-01	ci right 8.473384e-01	k: 109899	n:130000
KS ci ratio: 1.003239e-01	ci left: 1.102500e-02	ci right 1.219694e-02	k: 1508	n:130000
PCDHA11   130000 perm   42 sec   (3082 perm/sec)   p_kst 1.160000e-02   p_cons 8.453769e-01   p_joint 4.149231e-02

Joint ci ratio: 5.728535e-02	ci left: 3.143638e-02	ci right 3.329734e-02	k: 4530	n:140000
Cons ci ratio: 4.475933e-03	ci left: 8.437468e-01	ci right 8.475389e-01	k: 118391	n:140000
KS ci ratio: 9.875765e-02	ci left: 1.057867e-02	ci right 1.168458e-02	k: 1557	n:140000
PCDHA11   140000 perm   46 sec   (3038 perm/sec)   p_kst 1.112143e-02   p_cons 8.456500e-01   p_joint 3.235714e-02

Outputting figure to mutsig2_images.part000000000126/PCDHA11.15_2907_140000_0.011121_0.84565_0.032357.png
                gene_name: PCDHA11
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 13 percent done.
PCDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
Cons ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
KS ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
PCDH8   10000 perm   2 sec   (4190 perm/sec)   p_kst 2.181000e-01   p_cons 5.120000e-02   p_joint 6.600000e-02

Joint ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
Cons ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
KS ci ratio: 5.297197e-02	ci left: 2.092241e-01	ci right 2.206589e-01	k: 4298	n:20000
PCDH8   20000 perm   5 sec   (3742 perm/sec)   p_kst 2.149000e-01   p_cons 5.290000e-02   p_joint 8.370000e-02

Joint ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
Cons ci ratio: 9.663212e-02	ci left: 4.948182e-02	ci right 5.453872e-02	k: 1559	n:30000
KS ci ratio: 4.355502e-02	ci left: 2.079484e-01	ci right 2.172406e-01	k: 6377	n:30000
PCDH8   30000 perm   8 sec   (3580 perm/sec)   p_kst 2.125667e-01   p_cons 5.196667e-02   p_joint 7.853333e-02

Outputting figure to mutsig2_images.part000000000126/PCDH8.13_3225_30000_0.21257_0.051967_0.078533.png
                gene_name: PCDH8
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 14 percent done.
PCDHA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
Cons ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
PCDHA12   10000 perm   2 sec   (4337 perm/sec)   p_kst 2.900000e-03   p_cons 3.752000e-01   p_joint 1.690000e-02

Joint ci ratio: 3.890588e-01	ci left: 4.069996e-03	ci right 6.078049e-03	k: 100	n:20000
Cons ci ratio: 3.497050e-02	ci left: 3.790457e-01	ci right 3.925876e-01	k: 7716	n:20000
KS ci ratio: 4.710861e-01	ci left: 2.641171e-03	ci right 4.308347e-03	k: 68	n:20000
PCDHA12   20000 perm   5 sec   (3870 perm/sec)   p_kst 3.400000e-03   p_cons 3.858000e-01   p_joint 5.000000e-03

Joint ci ratio: 2.162579e-01	ci left: 9.661284e-03	ci right 1.203487e-02	k: 324	n:30000
Cons ci ratio: 2.845208e-02	ci left: 3.819816e-01	ci right 3.930402e-01	k: 11625	n:30000
KS ci ratio: 3.837144e-01	ci left: 2.803236e-03	ci right 4.162393e-03	k: 103	n:30000
PCDHA12   30000 perm   8 sec   (3675 perm/sec)   p_kst 3.433333e-03   p_cons 3.875000e-01   p_joint 1.080000e-02

Joint ci ratio: 1.470722e-01	ci left: 1.616533e-02	ci right 1.875540e-02	k: 697	n:40000
Cons ci ratio: 2.463933e-02	ci left: 3.827465e-01	ci right 3.923199e-01	k: 15501	n:40000
KS ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
PCDHA12   40000 perm   11 sec   (3568 perm/sec)   p_kst 3.800000e-03   p_cons 3.875250e-01   p_joint 1.742500e-02

Joint ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
Cons ci ratio: 2.208876e-02	ci left: 3.821686e-01	ci right 3.907246e-01	k: 19322	n:50000
KS ci ratio: 2.861194e-01	ci left: 3.205375e-03	ci right 4.293492e-03	k: 186	n:50000
PCDHA12   50000 perm   14 sec   (3479 perm/sec)   p_kst 3.720000e-03   p_cons 3.864400e-01   p_joint 1.406000e-02

Joint ci ratio: 1.398057e-01	ci left: 1.202846e-02	ci right 1.385244e-02	k: 775	n:60000
Cons ci ratio: 2.013275e-02	ci left: 3.832829e-01	ci right 3.910946e-01	k: 23231	n:60000
KS ci ratio: 2.626038e-01	ci left: 3.214419e-03	ci right 4.201211e-03	k: 221	n:60000
PCDHA12   60000 perm   18 sec   (3406 perm/sec)   p_kst 3.683333e-03   p_cons 3.871833e-01   p_joint 1.291667e-02

Joint ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
Cons ci ratio: 1.860176e-02	ci left: 3.845303e-01	ci right 3.917647e-01	k: 27170	n:70000
KS ci ratio: 2.474777e-01	ci left: 3.129649e-03	ci right 4.026563e-03	k: 249	n:70000
PCDHA12   70000 perm   21 sec   (3328 perm/sec)   p_kst 3.557143e-03   p_cons 3.881429e-01   p_joint 9.400000e-03

Joint ci ratio: 1.612000e-01	ci left: 6.745777e-03	ci right 7.940369e-03	k: 586	n:80000
Cons ci ratio: 1.759729e-02	ci left: 3.794423e-01	ci right 3.861912e-01	k: 30625	n:80000
KS ci ratio: 2.372790e-01	ci left: 2.996721e-03	ci right 3.814945e-03	k: 271	n:80000
PCDHA12   80000 perm   24 sec   (3273 perm/sec)   p_kst 3.387500e-03   p_cons 3.828125e-01   p_joint 7.325000e-03

Joint ci ratio: 1.908285e-01	ci left: 4.221295e-03	ci right 5.122199e-03	k: 419	n:90000
Cons ci ratio: 1.594277e-02	ci left: 3.986058e-01	ci right 4.050228e-01	k: 36163	n:90000
KS ci ratio: 2.270846e-01	ci left: 2.925366e-03	ci right 3.684983e-03	k: 296	n:90000
PCDHA12   90000 perm   28 sec   (3220 perm/sec)   p_kst 3.288889e-03   p_cons 4.018111e-01   p_joint 4.655556e-03

Joint ci ratio: 1.864662e-01	ci left: 3.989675e-03	ci right 4.819475e-03	k: 439	n:100000
Cons ci ratio: 1.514738e-02	ci left: 3.980502e-01	ci right 4.041356e-01	k: 40109	n:100000
KS ci ratio: 2.164207e-01	ci left: 2.916172e-03	ci right 3.633118e-03	k: 326	n:100000
PCDHA12   100000 perm   32 sec   (3170 perm/sec)   p_kst 3.260000e-03   p_cons 4.010900e-01   p_joint 4.390000e-03

Joint ci ratio: 1.819907e-01	ci left: 3.817722e-03	ci right 4.590596e-03	k: 461	n:110000
Cons ci ratio: 1.443072e-02	ci left: 3.985831e-01	ci right 4.043858e-01	k: 44163	n:110000
KS ci ratio: 2.042798e-01	ci left: 2.995572e-03	ci right 3.685570e-03	k: 366	n:110000
PCDHA12   110000 perm   35 sec   (3120 perm/sec)   p_kst 3.327273e-03   p_cons 4.014818e-01   p_joint 4.190909e-03

Joint ci ratio: 1.269463e-01	ci left: 7.382644e-03	ci right 8.391356e-03	k: 945	n:120000
Cons ci ratio: 1.379767e-02	ci left: 3.993573e-01	ci right 4.049141e-01	k: 48256	n:120000
KS ci ratio: 1.932632e-01	ci left: 3.086466e-03	ci right 3.754554e-03	k: 409	n:120000
PCDHA12   120000 perm   39 sec   (3073 perm/sec)   p_kst 3.408333e-03   p_cons 4.021333e-01   p_joint 7.875000e-03

Joint ci ratio: 1.273245e-01	ci left: 6.777375e-03	ci right 7.706348e-03	k: 940	n:130000
Cons ci ratio: 1.326282e-02	ci left: 3.992332e-01	ci right 4.045712e-01	k: 52247	n:130000
KS ci ratio: 1.848825e-01	ci left: 3.127528e-03	ci right 3.771858e-03	k: 447	n:130000
PCDHA12   130000 perm   43 sec   (3030 perm/sec)   p_kst 3.438462e-03   p_cons 4.019000e-01   p_joint 7.230769e-03

Joint ci ratio: 1.216921e-01	ci left: 6.909225e-03	ci right 7.811359e-03	k: 1029	n:140000
Cons ci ratio: 1.277280e-02	ci left: 3.996157e-01	ci right 4.047598e-01	k: 56306	n:140000
KS ci ratio: 1.782428e-01	ci left: 3.135956e-03	ci right 3.756319e-03	k: 481	n:140000
PCDHA12   140000 perm   47 sec   (2986 perm/sec)   p_kst 3.435714e-03   p_cons 4.021857e-01   p_joint 7.350000e-03

Joint ci ratio: 1.181916e-01	ci left: 6.849530e-03	ci right 7.716346e-03	k: 1091	n:150000
Cons ci ratio: 1.234019e-02	ci left: 3.996839e-01	ci right 4.046533e-01	k: 60325	n:150000
KS ci ratio: 1.716046e-01	ci left: 3.169141e-03	ci right 3.770304e-03	k: 519	n:150000
PCDHA12   150000 perm   51 sec   (2944 perm/sec)   p_kst 3.460000e-03   p_cons 4.021667e-01   p_joint 7.273333e-03

Joint ci ratio: 1.182187e-01	ci left: 6.421350e-03	ci right 7.234175e-03	k: 1091	n:160000
Cons ci ratio: 1.195218e-02	ci left: 3.996087e-01	ci right 4.044198e-01	k: 64322	n:160000
KS ci ratio: 1.661054e-01	ci left: 3.180579e-03	ci right 3.762643e-03	k: 554	n:160000
PCDHA12   160000 perm   55 sec   (2902 perm/sec)   p_kst 3.462500e-03   p_cons 4.020125e-01   p_joint 6.818750e-03

Joint ci ratio: 1.155063e-01	ci left: 6.340549e-03	ci right 7.123474e-03	k: 1143	n:170000
Cons ci ratio: 1.159506e-02	ci left: 3.996915e-01	ci right 4.043589e-01	k: 68344	n:170000
KS ci ratio: 1.600181e-01	ci left: 3.236115e-03	ci right 3.804553e-03	k: 597	n:170000
PCDHA12   170000 perm   59 sec   (2863 perm/sec)   p_kst 3.511765e-03   p_cons 4.020235e-01   p_joint 6.723529e-03

Joint ci ratio: 1.028508e-01	ci left: 7.593621e-03	ci right 8.422342e-03	k: 1440	n:180000
Cons ci ratio: 1.127558e-02	ci left: 3.994507e-01	ci right 4.039858e-01	k: 72309	n:180000
KS ci ratio: 1.562764e-01	ci left: 3.211063e-03	ci right 3.760676e-03	k: 626	n:180000
PCDHA12   180000 perm   64 sec   (2826 perm/sec)   p_kst 3.477778e-03   p_cons 4.017167e-01   p_joint 8.000000e-03

Joint ci ratio: 1.015322e-01	ci left: 7.388805e-03	ci right 8.184218e-03	k: 1478	n:190000
Cons ci ratio: 1.098352e-02	ci left: 3.991317e-01	ci right 4.035450e-01	k: 76254	n:190000
KS ci ratio: 1.518591e-01	ci left: 3.229292e-03	ci right 3.764981e-03	k: 663	n:190000
PCDHA12   190000 perm   68 sec   (2785 perm/sec)   p_kst 3.489474e-03   p_cons 4.013368e-01   p_joint 7.778947e-03

Joint ci ratio: 1.066066e-01	ci left: 6.356871e-03	ci right 7.077538e-03	k: 1342	n:200000
Cons ci ratio: 1.071917e-02	ci left: 3.985713e-01	ci right 4.028716e-01	k: 80144	n:200000
KS ci ratio: 1.483281e-01	ci left: 3.221817e-03	ci right 3.742737e-03	k: 695	n:200000
PCDHA12   200000 perm   73 sec   (2752 perm/sec)   p_kst 3.475000e-03   p_cons 4.007200e-01   p_joint 6.710000e-03

Joint ci ratio: 9.048919e-02	ci left: 8.456166e-03	ci right 9.262241e-03	k: 1859	n:210000
Cons ci ratio: 1.045102e-02	ci left: 3.990741e-01	ci right 4.032715e-01	k: 84246	n:210000
KS ci ratio: 1.445353e-01	ci left: 3.238135e-03	ci right 3.747150e-03	k: 732	n:210000
PCDHA12   210000 perm   77 sec   (2718 perm/sec)   p_kst 3.485714e-03   p_cons 4.011714e-01   p_joint 8.852381e-03

Joint ci ratio: 8.458468e-02	ci left: 9.259046e-03	ci right 1.008122e-02	k: 2126	n:220000
Cons ci ratio: 1.020608e-02	ci left: 3.993417e-01	ci right 4.034428e-01	k: 88306	n:220000
KS ci ratio: 1.410192e-01	ci left: 3.253123e-03	ci right 3.751009e-03	k: 769	n:220000
PCDHA12   220000 perm   82 sec   (2688 perm/sec)   p_kst 3.495455e-03   p_cons 4.013909e-01   p_joint 9.663636e-03

Joint ci ratio: 8.939266e-02	ci left: 7.920501e-03	ci right 8.665883e-03	k: 1906	n:230000
Cons ci ratio: 9.980381e-03	ci left: 3.994523e-01	ci right 4.034633e-01	k: 92335	n:230000
KS ci ratio: 1.385253e-01	ci left: 3.229162e-03	ci right 3.713919e-03	k: 797	n:230000
PCDHA12   230000 perm   87 sec   (2657 perm/sec)   p_kst 3.465217e-03   p_cons 4.014565e-01   p_joint 8.286957e-03

Joint ci ratio: 8.750858e-02	ci left: 7.928665e-03	ci right 8.658285e-03	k: 1989	n:240000
Cons ci ratio: 9.767078e-03	ci left: 3.996503e-01	ci right 4.035770e-01	k: 96387	n:240000
KS ci ratio: 1.360764e-01	ci left: 3.211294e-03	ci right 3.684156e-03	k: 826	n:240000
PCDHA12   240000 perm   91 sec   (2626 perm/sec)   p_kst 3.441667e-03   p_cons 4.016125e-01   p_joint 8.287500e-03

Joint ci ratio: 8.637125e-02	ci left: 7.818890e-03	ci right 8.528584e-03	k: 2042	n:250000
Cons ci ratio: 9.565138e-03	ci left: 3.999213e-01	ci right 4.037690e-01	k: 100461	n:250000
KS ci ratio: 1.332076e-01	ci left: 3.221993e-03	ci right 3.685636e-03	k: 862	n:250000
PCDHA12   250000 perm   96 sec   (2596 perm/sec)   p_kst 3.448000e-03   p_cons 4.018440e-01   p_joint 8.168000e-03

Joint ci ratio: 8.560703e-02	ci left: 7.657383e-03	ci right 8.345960e-03	k: 2079	n:260000
Cons ci ratio: 9.372450e-03	ci left: 4.003144e-01	ci right 4.040878e-01	k: 104572	n:260000
KS ci ratio: 1.304401e-01	ci left: 3.235687e-03	ci right 3.690877e-03	k: 899	n:260000
PCDHA12   260000 perm   101 sec   (2566 perm/sec)   p_kst 3.457692e-03   p_cons 4.022000e-01   p_joint 7.996154e-03

Joint ci ratio: 8.635504e-02	ci left: 7.246868e-03	ci right 7.904509e-03	k: 2044	n:270000
Cons ci ratio: 9.200865e-03	ci left: 4.001609e-01	ci right 4.038634e-01	k: 108543	n:270000
KS ci ratio: 1.276333e-01	ci left: 3.259215e-03	ci right 3.707103e-03	k: 939	n:270000
PCDHA12   270000 perm   106 sec   (2538 perm/sec)   p_kst 3.477778e-03   p_cons 4.020111e-01   p_joint 7.570370e-03

Joint ci ratio: 8.517902e-02	ci left: 7.187247e-03	ci right 7.830153e-03	k: 2101	n:280000
Cons ci ratio: 9.032597e-03	ci left: 4.003259e-01	ci right 4.039618e-01	k: 112600	n:280000
KS ci ratio: 1.257754e-01	ci left: 3.239643e-03	ci right 3.677877e-03	k: 967	n:280000
PCDHA12   280000 perm   112 sec   (2510 perm/sec)   p_kst 3.453571e-03   p_cons 4.021429e-01   p_joint 7.503571e-03

Joint ci ratio: 8.496648e-02	ci left: 6.976502e-03	ci right 7.598922e-03	k: 2112	n:290000
Cons ci ratio: 8.873553e-03	ci left: 4.004629e-01	ci right 4.040356e-01	k: 116652	n:290000
KS ci ratio: 1.241214e-01	ci left: 3.214781e-03	ci right 3.643513e-03	k: 993	n:290000
PCDHA12   290000 perm   117 sec   (2482 perm/sec)   p_kst 3.424138e-03   p_cons 4.022483e-01   p_joint 7.282759e-03

Joint ci ratio: 8.380648e-02	ci left: 6.936463e-03	ci right 7.546448e-03	k: 2171	n:300000
Cons ci ratio: 8.722261e-03	ci left: 4.006112e-01	ci right 4.041240e-01	k: 120710	n:300000
KS ci ratio: 1.218140e-01	ci left: 3.230394e-03	ci right 3.652622e-03	k: 1031	n:300000
PCDHA12   300000 perm   122 sec   (2455 perm/sec)   p_kst 3.436667e-03   p_cons 4.023667e-01   p_joint 7.236667e-03

Joint ci ratio: 7.859178e-02	ci left: 7.648280e-03	ci right 8.277099e-03	k: 2467	n:310000
Cons ci ratio: 8.579316e-03	ci left: 4.007021e-01	ci right 4.041578e-01	k: 124753	n:310000
KS ci ratio: 1.200253e-01	ci left: 3.223162e-03	ci right 3.637819e-03	k: 1062	n:310000
PCDHA12   310000 perm   128 sec   (2429 perm/sec)   p_kst 3.425806e-03   p_cons 4.024290e-01   p_joint 7.958065e-03

Joint ci ratio: 7.850552e-02	ci left: 7.427620e-03	ci right 8.037596e-03	k: 2473	n:320000
Cons ci ratio: 8.445754e-03	ci left: 4.006409e-01	ci right 4.040421e-01	k: 128749	n:320000
KS ci ratio: 1.183675e-01	ci left: 3.213392e-03	ci right 3.620683e-03	k: 1092	n:320000
PCDHA12   320000 perm   133 sec   (2404 perm/sec)   p_kst 3.412500e-03   p_cons 4.023406e-01   p_joint 7.728125e-03

Joint ci ratio: 7.418126e-02	ci left: 8.079523e-03	ci right 8.704913e-03	k: 2768	n:330000
Cons ci ratio: 8.315621e-03	ci left: 4.007353e-01	ci right 4.040846e-01	k: 132795	n:330000
KS ci ratio: 1.167765e-01	ci left: 3.204251e-03	ci right 3.604548e-03	k: 1122	n:330000
PCDHA12   330000 perm   139 sec   (2379 perm/sec)   p_kst 3.400000e-03   p_cons 4.024091e-01   p_joint 8.387879e-03

Joint ci ratio: 7.344537e-02	ci left: 8.003544e-03	ci right 8.616645e-03	k: 2824	n:340000
Cons ci ratio: 8.194330e-03	ci left: 4.006482e-01	ci right 4.039476e-01	k: 136781	n:340000
KS ci ratio: 1.148488e-01	ci left: 3.218537e-03	ci right 3.613531e-03	k: 1160	n:340000
PCDHA12   340000 perm   144 sec   (2353 perm/sec)   p_kst 3.411765e-03   p_cons 4.022971e-01   p_joint 8.305882e-03

Joint ci ratio: 7.235204e-02	ci left: 8.016109e-03	ci right 8.620646e-03	k: 2910	n:350000
Cons ci ratio: 8.076036e-03	ci left: 4.006948e-01	ci right 4.039468e-01	k: 140812	n:350000
KS ci ratio: 1.129663e-01	ci left: 3.234834e-03	ci right 3.624887e-03	k: 1199	n:350000
PCDHA12   350000 perm   150 sec   (2328 perm/sec)   p_kst 3.425714e-03   p_cons 4.023200e-01   p_joint 8.314286e-03

Joint ci ratio: 7.360705e-02	ci left: 7.528842e-03	ci right 8.106901e-03	k: 2813	n:360000
Cons ci ratio: 7.965619e-03	ci left: 4.005643e-01	ci right 4.037706e-01	k: 144780	n:360000
KS ci ratio: 1.111735e-01	ci left: 3.250276e-03	ci right 3.635563e-03	k: 1238	n:360000
PCDHA12   360000 perm   156 sec   (2305 perm/sec)   p_kst 3.438889e-03   p_cons 4.021667e-01   p_joint 7.813889e-03

Joint ci ratio: 7.524885e-02	ci left: 7.007000e-03	ci right 7.557516e-03	k: 2693	n:370000
Cons ci ratio: 7.855459e-03	ci left: 4.006951e-01	ci right 4.038578e-01	k: 148842	n:370000
KS ci ratio: 1.093346e-01	ci left: 3.272816e-03	ci right 3.653945e-03	k: 1280	n:370000
PCDHA12   370000 perm   162 sec   (2282 perm/sec)   p_kst 3.459459e-03   p_cons 4.022757e-01   p_joint 7.278378e-03

Joint ci ratio: 7.472714e-02	ci left: 6.920718e-03	ci right 7.460522e-03	k: 2731	n:380000
Cons ci ratio: 7.750593e-03	ci left: 4.007666e-01	ci right 4.038875e-01	k: 152884	n:380000
KS ci ratio: 1.077067e-01	ci left: 3.286536e-03	ci right 3.663203e-03	k: 1319	n:380000
PCDHA12   380000 perm   168 sec   (2259 perm/sec)   p_kst 3.471053e-03   p_cons 4.023263e-01   p_joint 7.186842e-03

Joint ci ratio: 7.390764e-02	ci left: 6.896764e-03	ci right 7.428546e-03	k: 2792	n:390000
Cons ci ratio: 7.655123e-03	ci left: 4.005017e-01	ci right 4.035818e-01	k: 156796	n:390000
KS ci ratio: 1.062279e-01	ci left: 3.294600e-03	ci right 3.666683e-03	k: 1356	n:390000
PCDHA12   390000 perm   174 sec   (2237 perm/sec)   p_kst 3.476923e-03   p_cons 4.020410e-01   p_joint 7.158974e-03

Joint ci ratio: 7.392764e-02	ci left: 6.721869e-03	ci right 7.240311e-03	k: 2791	n:400000
Cons ci ratio: 7.559828e-03	ci left: 4.004575e-01	ci right 4.034989e-01	k: 160791	n:400000
KS ci ratio: 1.046578e-01	ci left: 3.312033e-03	ci right 3.680217e-03	k: 1397	n:400000
PCDHA12   400000 perm   181 sec   (2215 perm/sec)   p_kst 3.492500e-03   p_cons 4.019775e-01   p_joint 6.977500e-03

Joint ci ratio: 7.300510e-02	ci left: 6.727911e-03	ci right 7.240069e-03	k: 2862	n:410000
Cons ci ratio: 7.469331e-03	ci left: 4.003305e-01	ci right 4.033343e-01	k: 164751	n:410000
KS ci ratio: 1.032273e-01	ci left: 3.323902e-03	ci right 3.688048e-03	k: 1436	n:410000
PCDHA12   410000 perm   187 sec   (2193 perm/sec)   p_kst 3.502439e-03   p_cons 4.018317e-01   p_joint 6.980488e-03

Joint ci ratio: 7.216582e-02	ci left: 6.724351e-03	ci right 7.230106e-03	k: 2929	n:420000
Cons ci ratio: 7.381898e-03	ci left: 4.002169e-01	ci right 4.031845e-01	k: 168714	n:420000
KS ci ratio: 1.017848e-01	ci left: 3.339879e-03	ci right 3.700357e-03	k: 1477	n:420000
PCDHA12   420000 perm   193 sec   (2172 perm/sec)   p_kst 3.516667e-03   p_cons 4.017000e-01   p_joint 6.973810e-03

Joint ci ratio: 7.183920e-02	ci left: 6.629619e-03	ci right 7.125898e-03	k: 2956	n:430000
Cons ci ratio: 7.298312e-03	ci left: 4.000529e-01	ci right 4.029856e-01	k: 172653	n:430000
KS ci ratio: 1.004010e-01	ci left: 3.355147e-03	ci right 3.712059e-03	k: 1518	n:430000
PCDHA12   430000 perm   200 sec   (2151 perm/sec)   p_kst 3.530233e-03   p_cons 4.015186e-01   p_joint 6.874419e-03

Joint ci ratio: 7.114573e-02	ci left: 6.608405e-03	ci right 7.098123e-03	k: 3014	n:440000
Cons ci ratio: 7.215794e-03	ci left: 4.000102e-01	ci right 4.029093e-01	k: 176642	n:440000
KS ci ratio: 9.929607e-02	ci left: 3.354237e-03	ci right 3.706896e-03	k: 1552	n:440000
PCDHA12   440000 perm   206 sec   (2131 perm/sec)   p_kst 3.527273e-03   p_cons 4.014591e-01   p_joint 6.850000e-03

Outputting figure to mutsig2_images.part000000000126/PCDHA12.13_2852_440000_0.0035273_0.40146_0.00685.png
                gene_name: PCDHA12
               theta_stop: 0.099 
                    nperm: 440000 
                     p_ks: 0.0035 
        ci_ks_bounds_left: 0.0034 
       ci_ks_bounds_right: 0.0037 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0069 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0071 

Current progress: 16 percent done.
PASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
Cons ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
KS ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
PASD1   10000 perm   2 sec   (4492 perm/sec)   p_kst 2.614000e-01   p_cons 2.607000e-01   p_joint 2.897000e-01

Outputting figure to mutsig2_images.part000000000126/PASD1.12_2382_10000_0.2614_0.2607_0.2897.png
                gene_name: PASD1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 17 percent done.
PCDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
Cons ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
KS ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
PCDH19   10000 perm   3 sec   (4000 perm/sec)   p_kst 3.642000e-01   p_cons 5.178000e-01   p_joint 5.708000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH19.11_3471_10000_0.3642_0.5178_0.5708.png
                gene_name: PCDH19
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
PCDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
KS ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
PCDH20   10000 perm   2 sec   (4097 perm/sec)   p_kst 8.962000e-01   p_cons 7.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH20.11_2864_10000_0.8962_0.755_1.png
                gene_name: PCDH20
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PCDHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
Cons ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
KS ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
PCDHA10   10000 perm   2 sec   (4151 perm/sec)   p_kst 1.609000e-01   p_cons 5.879000e-01   p_joint 3.219000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA10.11_3008_10000_0.1609_0.5879_0.3219.png
                gene_name: PCDHA10
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 22 percent done.
PCDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
Cons ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
KS ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
PCDH1   10000 perm   2 sec   (4000 perm/sec)   p_kst 3.863000e-01   p_cons 3.325000e-01   p_joint 4.022000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH1.10_3818_10000_0.3863_0.3325_0.4022.png
                gene_name: PCDH1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 23 percent done.
PCDH11Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.120044e-02	ci left: 7.653697e-01	ci right 7.818706e-01	k: 7737	n:10000
Cons ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
KS ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
PCDH11Y   10000 perm   3 sec   (3968 perm/sec)   p_kst 6.499000e-01   p_cons 6.563000e-01   p_joint 7.737000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH11Y.9_4101_10000_0.6499_0.6563_0.7737.png
                gene_name: PCDH11Y
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 25 percent done.
PCDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
Cons ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
KS ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
PCDHA2   10000 perm   2 sec   (4572 perm/sec)   p_kst 1.308000e-01   p_cons 7.277000e-01   p_joint 2.518000e-01

Joint ci ratio: 4.836426e-02	ci left: 2.412335e-01	ci right 2.532401e-01	k: 4944	n:20000
Cons ci ratio: 1.725951e-02	ci left: 7.143246e-01	ci right 7.268112e-01	k: 14412	n:20000
KS ci ratio: 7.338550e-02	ci left: 1.202495e-01	ci right 1.294599e-01	k: 2496	n:20000
PCDHA2   20000 perm   5 sec   (4006 perm/sec)   p_kst 1.248000e-01   p_cons 7.206000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA2.9_2950_20000_0.1248_0.7206_0.2472.png
                gene_name: PCDHA2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 26 percent done.
PARP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
Cons ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
KS ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
PARP14   10000 perm   3 sec   (3802 perm/sec)   p_kst 5.641000e-01   p_cons 4.095000e-01   p_joint 9.308000e-01

Outputting figure to mutsig2_images.part000000000126/PARP14.8_5474_10000_0.5641_0.4095_0.9308.png
                gene_name: PARP14
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 28 percent done.
PASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
KS ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
PASK   10000 perm   3 sec   (3987 perm/sec)   p_kst 5.191000e-01   p_cons 9.312000e-01   p_joint 8.133000e-01

Outputting figure to mutsig2_images.part000000000126/PASK.8_4040_10000_0.5191_0.9312_0.8133.png
                gene_name: PASK
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 29 percent done.
PCDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
KS ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
PCDH7   10000 perm   2 sec   (4036 perm/sec)   p_kst 5.402000e-01   p_cons 5.457000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH7.8_3865_10000_0.5402_0.5457_0.857.png
                gene_name: PCDH7
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 30 percent done.
PCDHA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
PCDHA13   10000 perm   2 sec   (4787 perm/sec)   p_kst 1.913000e-01   p_cons 5.196000e-01   p_joint 3.796000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA13.8_2899_10000_0.1913_0.5196_0.3796.png
                gene_name: PCDHA13
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 32 percent done.
PARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
KS ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
PARK2   10000 perm   2 sec   (5445 perm/sec)   p_kst 4.690000e-02   p_cons 3.883000e-01   p_joint 6.590000e-02

Joint ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
Cons ci ratio: 3.500372e-02	ci left: 3.785972e-01	ci right 3.921362e-01	k: 7707	n:20000
KS ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
PARK2   20000 perm   4 sec   (4811 perm/sec)   p_kst 4.630000e-02   p_cons 3.853500e-01   p_joint 9.075000e-02

Joint ci ratio: 7.444573e-02	ci left: 8.144186e-02	ci right 8.777219e-02	k: 2537	n:30000
Cons ci ratio: 2.841416e-02	ci left: 3.826132e-01	ci right 3.936751e-01	k: 11644	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
PARK2   30000 perm   7 sec   (4530 perm/sec)   p_kst 4.506667e-02   p_cons 3.881333e-01   p_joint 8.456667e-02

Joint ci ratio: 7.444346e-02	ci left: 6.240671e-02	ci right 6.725670e-02	k: 2592	n:40000
Cons ci ratio: 2.457975e-02	ci left: 3.838938e-01	ci right 3.934724e-01	k: 15547	n:40000
KS ci ratio: 9.052868e-02	ci left: 4.274445e-02	ci right 4.682196e-02	k: 1790	n:40000
PARK2   40000 perm   9 sec   (4355 perm/sec)   p_kst 4.475000e-02   p_cons 3.886750e-01   p_joint 6.480000e-02

Outputting figure to mutsig2_images.part000000000126/PARK2.7_1446_40000_0.04475_0.38867_0.0648.png
                gene_name: PARK2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 33 percent done.
PARP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
Cons ci ratio: 6.883135e-02	ci left: 2.363980e-01	ci right 2.533508e-01	k: 2448	n:10000
KS ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
PARP4   10000 perm   3 sec   (3925 perm/sec)   p_kst 9.613000e-01   p_cons 2.448000e-01   p_joint 3.651000e-01

Outputting figure to mutsig2_images.part000000000126/PARP4.7_5307_10000_0.9613_0.2448_0.3651.png
                gene_name: PARP4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 35 percent done.
PARP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
Cons ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
PARP8   10000 perm   2 sec   (5069 perm/sec)   p_kst 3.253000e-01   p_cons 6.233000e-01   p_joint 4.778000e-01

Outputting figure to mutsig2_images.part000000000126/PARP8.7_2669_10000_0.3253_0.6233_0.4778.png
                gene_name: PARP8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 36 percent done.
PAX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
PAX4   10000 perm   2 sec   (5963 perm/sec)   p_kst 1.999000e-01   p_cons 1.921000e-01   p_joint 2.340000e-01

Outputting figure to mutsig2_images.part000000000126/PAX4.7_1068_10000_0.1999_0.1921_0.234.png
                gene_name: PAX4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 38 percent done.
PBXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
PBXIP1   10000 perm   2 sec   (5324 perm/sec)   p_kst 8.500000e-02   p_cons 8.385000e-01   p_joint 1.804000e-01

Joint ci ratio: 5.853731e-02	ci left: 1.777614e-01	ci right 1.885309e-01	k: 3662	n:20000
Cons ci ratio: 1.211600e-02	ci left: 8.344398e-01	ci right 8.446613e-01	k: 16792	n:20000
KS ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
PBXIP1   20000 perm   4 sec   (4614 perm/sec)   p_kst 8.565000e-02   p_cons 8.396000e-01   p_joint 1.831000e-01

Outputting figure to mutsig2_images.part000000000126/PBXIP1.7_2236_20000_0.08565_0.8396_0.1831.png
                gene_name: PBXIP1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
PARD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
Cons ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KS ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
PARD3   10000 perm   2 sec   (4120 perm/sec)   p_kst 3.460000e-01   p_cons 2.804000e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000126/PARD3.6_4206_10000_0.346_0.2804_0.4402.png
                gene_name: PARD3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 41 percent done.
PARP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
Cons ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
PARP3   10000 perm   2 sec   (5294 perm/sec)   p_kst 6.950000e-02   p_cons 5.754000e-01   p_joint 1.518000e-01

Joint ci ratio: 5.753019e-02	ci left: 1.829518e-01	ci right 1.938389e-01	k: 3767	n:20000
Cons ci ratio: 2.401230e-02	ci left: 5.643563e-01	ci right 5.781230e-01	k: 11425	n:20000
KS ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
PARP3   20000 perm   4 sec   (4619 perm/sec)   p_kst 7.560000e-02   p_cons 5.712500e-01   p_joint 1.883500e-01

Outputting figure to mutsig2_images.part000000000126/PARP3.6_1667_20000_0.0756_0.57125_0.18835.png
                gene_name: PARP3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
PAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
PAX1   10000 perm   2 sec   (5657 perm/sec)   p_kst 1.284000e-01   p_cons 7.138000e-01   p_joint 3.178000e-01

Joint ci ratio: 5.196475e-02	ci left: 2.157112e-01	ci right 2.272699e-01	k: 4429	n:20000
Cons ci ratio: 1.743318e-02	ci left: 7.102479e-01	ci right 7.227891e-01	k: 14331	n:20000
KS ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
PAX1   20000 perm   4 sec   (4846 perm/sec)   p_kst 1.193500e-01   p_cons 7.165500e-01   p_joint 2.214500e-01

Outputting figure to mutsig2_images.part000000000126/PAX1.6_1625_20000_0.11935_0.71655_0.22145.png
                gene_name: PAX1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 43 percent done.
PAX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
Cons ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
KS ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
PAX2   10000 perm   2 sec   (5194 perm/sec)   p_kst 5.118000e-01   p_cons 1.480000e-02   p_joint 6.470000e-02

Joint ci ratio: 1.043556e-01	ci left: 6.245098e-02	ci right 6.937587e-02	k: 1317	n:20000
Cons ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
KS ci ratio: 2.706459e-02	ci left: 5.049461e-01	ci right 5.188504e-01	k: 10238	n:20000
PAX2   20000 perm   4 sec   (4523 perm/sec)   p_kst 5.119000e-01   p_cons 1.705000e-02   p_joint 6.585000e-02

Joint ci ratio: 8.080810e-02	ci left: 6.978673e-02	ci right 7.569634e-02	k: 2181	n:30000
Cons ci ratio: 1.734854e-01	ci left: 1.528021e-02	ci right 1.821445e-02	k: 501	n:30000
KS ci ratio: 2.209868e-02	ci left: 5.062261e-01	ci right 5.175716e-01	k: 15357	n:30000
PAX2   30000 perm   7 sec   (4282 perm/sec)   p_kst 5.119000e-01   p_cons 1.670000e-02   p_joint 7.270000e-02

Joint ci ratio: 6.514742e-02	ci left: 8.028962e-02	ci right 8.572110e-02	k: 3319	n:40000
Cons ci ratio: 1.508558e-01	ci left: 1.534652e-02	ci right 1.787436e-02	k: 663	n:40000
KS ci ratio: 1.919577e-02	ci left: 5.054880e-01	ci right 5.153104e-01	k: 20416	n:40000
PAX2   40000 perm   10 sec   (4143 perm/sec)   p_kst 5.104000e-01   p_cons 1.657500e-02   p_joint 8.297500e-02

Joint ci ratio: 5.852386e-02	ci left: 7.992516e-02	ci right 8.476346e-02	k: 4116	n:50000
Cons ci ratio: 1.356798e-01	ci left: 1.530489e-02	ci right 1.755176e-02	k: 820	n:50000
KS ci ratio: 1.713983e-02	ci left: 5.068680e-01	ci right 5.156507e-01	k: 25563	n:50000
PAX2   50000 perm   12 sec   (4026 perm/sec)   p_kst 5.112600e-01   p_cons 1.640000e-02   p_joint 8.232000e-02

Joint ci ratio: 5.250033e-02	ci left: 8.278030e-02	ci right 8.725994e-02	k: 5100	n:60000
Cons ci ratio: 1.227359e-01	ci left: 1.568974e-02	ci right 1.775739e-02	k: 1002	n:60000
KS ci ratio: 1.564423e-02	ci left: 5.073248e-01	ci right 5.153408e-01	k: 30680	n:60000
PAX2   60000 perm   15 sec   (3937 perm/sec)   p_kst 5.113333e-01   p_cons 1.670000e-02   p_joint 8.500000e-02

Joint ci ratio: 4.374691e-02	ci left: 1.006445e-01	ci right 1.051600e-01	k: 7202	n:70000
Cons ci ratio: 1.124243e-01	ci left: 1.611084e-02	ci right 1.804377e-02	k: 1194	n:70000
KS ci ratio: 1.446076e-02	ci left: 5.084181e-01	ci right 5.158380e-01	k: 35849	n:70000
PAX2   70000 perm   18 sec   (3856 perm/sec)   p_kst 5.121286e-01   p_cons 1.705714e-02   p_joint 1.028857e-01

Joint ci ratio: 4.661209e-02	ci left: 7.932858e-02	ci right 8.312685e-02	k: 6497	n:80000
Cons ci ratio: 1.055459e-01	ci left: 1.605463e-02	ci right 1.785564e-02	k: 1355	n:80000
KS ci ratio: 1.366635e-02	ci left: 5.035291e-01	ci right 5.104704e-01	k: 40560	n:80000
PAX2   80000 perm   21 sec   (3780 perm/sec)   p_kst 5.070000e-01   p_cons 1.693750e-02   p_joint 8.121250e-02

Joint ci ratio: 4.251368e-02	ci left: 8.447323e-02	ci right 8.815349e-02	k: 7767	n:90000
Cons ci ratio: 9.959275e-02	ci left: 1.607877e-02	ci right 1.777479e-02	k: 1522	n:90000
KS ci ratio: 1.288822e-02	ci left: 5.035946e-01	ci right 5.101383e-01	k: 45618	n:90000
PAX2   90000 perm   24 sec   (3712 perm/sec)   p_kst 5.068667e-01   p_cons 1.691111e-02   p_joint 8.630000e-02

Outputting figure to mutsig2_images.part000000000126/PAX2.6_1449_90000_0.50687_0.016911_0.0863.png
                gene_name: PAX2
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.088 

Current progress: 45 percent done.
PAX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
PAX3   10000 perm   2 sec   (5143 perm/sec)   p_kst 3.900000e-03   p_cons 3.203000e-01   p_joint 1.120000e-02

Joint ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
Cons ci ratio: 4.033685e-02	ci left: 3.142328e-01	ci right 3.272194e-01	k: 6414	n:20000
KS ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
PAX3   20000 perm   4 sec   (4550 perm/sec)   p_kst 3.750000e-03   p_cons 3.207000e-01   p_joint 5.300000e-03

Joint ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
Cons ci ratio: 3.343906e-02	ci left: 3.088824e-01	ci right 3.194203e-01	k: 9424	n:30000
KS ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
PAX3   30000 perm   7 sec   (4312 perm/sec)   p_kst 3.233333e-03   p_cons 3.141333e-01   p_joint 3.800000e-03

Joint ci ratio: 2.471435e-01	ci left: 5.477738e-03	ci right 7.045240e-03	k: 249	n:40000
Cons ci ratio: 2.877143e-02	ci left: 3.123912e-01	ci right 3.215354e-01	k: 12678	n:40000
KS ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
PAX3   40000 perm   10 sec   (4173 perm/sec)   p_kst 3.175000e-03   p_cons 3.169500e-01   p_joint 6.225000e-03

Joint ci ratio: 2.226715e-01	ci left: 5.474083e-03	ci right 6.864189e-03	k: 307	n:50000
Cons ci ratio: 2.572178e-02	ci left: 3.130816e-01	ci right 3.212596e-01	k: 15858	n:50000
KS ci ratio: 3.037425e-01	ci left: 2.816333e-03	ci right 3.842670e-03	k: 165	n:50000
PAX3   50000 perm   12 sec   (4064 perm/sec)   p_kst 3.300000e-03   p_cons 3.171600e-01   p_joint 6.140000e-03

Joint ci ratio: 2.217041e-01	ci left: 4.608718e-03	ci right 5.773267e-03	k: 310	n:60000
Cons ci ratio: 2.352664e-02	ci left: 3.125963e-01	ci right 3.200548e-01	k: 18979	n:60000
KS ci ratio: 2.713293e-01	ci left: 2.996652e-03	ci right 3.952370e-03	k: 207	n:60000
PAX3   60000 perm   15 sec   (3962 perm/sec)   p_kst 3.450000e-03   p_cons 3.163167e-01   p_joint 5.166667e-03

Joint ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
Cons ci ratio: 2.189586e-02	ci left: 3.106194e-01	ci right 3.175103e-01	k: 21984	n:70000
KS ci ratio: 2.489814e-01	ci left: 3.089450e-03	ci right 3.981057e-03	k: 246	n:70000
PAX3   70000 perm   18 sec   (3885 perm/sec)   p_kst 3.514286e-03   p_cons 3.140571e-01   p_joint 6.128571e-03

Joint ci ratio: 1.774566e-01	ci left: 5.524369e-03	ci right 6.611920e-03	k: 484	n:80000
Cons ci ratio: 2.052559e-02	ci left: 3.099244e-01	ci right 3.163642e-01	k: 25051	n:80000
KS ci ratio: 2.321945e-01	ci left: 3.137927e-03	ci right 3.973713e-03	k: 283	n:80000
PAX3   80000 perm   21 sec   (3813 perm/sec)   p_kst 3.537500e-03   p_cons 3.131375e-01   p_joint 6.050000e-03

Joint ci ratio: 1.351892e-01	ci left: 8.629501e-03	ci right 9.891322e-03	k: 832	n:90000
Cons ci ratio: 1.935546e-02	ci left: 3.100264e-01	ci right 3.160968e-01	k: 28175	n:90000
KS ci ratio: 2.163811e-01	ci left: 3.240251e-03	ci right 4.036714e-03	k: 326	n:90000
PAX3   90000 perm   24 sec   (3745 perm/sec)   p_kst 3.622222e-03   p_cons 3.130556e-01   p_joint 9.244444e-03

Joint ci ratio: 1.478547e-01	ci left: 6.463702e-03	ci right 7.505202e-03	k: 697	n:100000
Cons ci ratio: 1.908660e-02	ci left: 2.938298e-01	ci right 2.995020e-01	k: 29666	n:100000
KS ci ratio: 2.042455e-01	ci left: 3.295182e-03	ci right 4.054054e-03	k: 366	n:100000
PAX3   100000 perm   27 sec   (3680 perm/sec)   p_kst 3.660000e-03   p_cons 2.966600e-01   p_joint 6.970000e-03

Joint ci ratio: 1.436159e-01	ci left: 6.243938e-03	ci right 7.218707e-03	k: 739	n:110000
Cons ci ratio: 1.820419e-02	ci left: 2.938291e-01	ci right 2.992362e-01	k: 32618	n:110000
KS ci ratio: 1.941861e-01	ci left: 3.332496e-03	ci right 4.057695e-03	k: 405	n:110000
PAX3   110000 perm   30 sec   (3620 perm/sec)   p_kst 3.681818e-03   p_cons 2.965273e-01   p_joint 6.718182e-03

Joint ci ratio: 1.447429e-01	ci left: 5.635120e-03	ci right 6.522338e-03	k: 728	n:120000
Cons ci ratio: 1.741539e-02	ci left: 2.942741e-01	ci right 2.994523e-01	k: 35623	n:120000
KS ci ratio: 1.834229e-01	ci left: 3.443852e-03	ci right 4.147130e-03	k: 454	n:120000
PAX3   120000 perm   34 sec   (3562 perm/sec)   p_kst 3.783333e-03   p_cons 2.968583e-01   p_joint 6.066667e-03

Joint ci ratio: 1.250683e-01	ci left: 7.030713e-03	ci right 7.976070e-03	k: 974	n:130000
Cons ci ratio: 1.673176e-02	ci left: 2.943864e-01	ci right 2.993612e-01	k: 38593	n:130000
KS ci ratio: 1.772984e-01	ci left: 3.413978e-03	ci right 4.085380e-03	k: 486	n:130000
PAX3   130000 perm   37 sec   (3503 perm/sec)   p_kst 3.738462e-03   p_cons 2.968692e-01   p_joint 7.492308e-03

Joint ci ratio: 1.218113e-01	ci left: 6.895371e-03	ci right 7.796642e-03	k: 1027	n:140000
Cons ci ratio: 1.611066e-02	ci left: 2.947995e-01	ci right 2.995946e-01	k: 41607	n:140000
KS ci ratio: 1.709246e-01	ci left: 3.422894e-03	ci right 4.069356e-03	k: 523	n:140000
PAX3   140000 perm   41 sec   (3451 perm/sec)   p_kst 3.735714e-03   p_cons 2.971929e-01   p_joint 7.335714e-03

Joint ci ratio: 1.190735e-01	ci left: 6.746008e-03	ci right 7.606541e-03	k: 1075	n:150000
Cons ci ratio: 1.555693e-02	ci left: 2.950807e-01	ci right 2.997138e-01	k: 44609	n:150000
KS ci ratio: 1.656373e-01	ci left: 3.411821e-03	ci right 4.034271e-03	k: 557	n:150000
PAX3   150000 perm   44 sec   (3398 perm/sec)   p_kst 3.713333e-03   p_cons 2.973933e-01   p_joint 7.166667e-03

Joint ci ratio: 1.158906e-01	ci left: 6.688351e-03	ci right 7.517161e-03	k: 1135	n:160000
Cons ci ratio: 1.505798e-02	ci left: 2.952917e-01	ci right 2.997781e-01	k: 47605	n:160000
KS ci ratio: 1.590686e-01	ci left: 3.480410e-03	ci right 4.087789e-03	k: 604	n:160000
PAX3   160000 perm   48 sec   (3346 perm/sec)   p_kst 3.775000e-03   p_cons 2.975313e-01   p_joint 7.093750e-03

Joint ci ratio: 1.134767e-01	ci left: 6.574863e-03	ci right 7.371502e-03	k: 1184	n:170000
Cons ci ratio: 1.460599e-02	ci left: 2.954272e-01	ci right 2.997797e-01	k: 50592	n:170000
KS ci ratio: 1.536979e-01	ci left: 3.518730e-03	ci right 4.110154e-03	k: 647	n:170000
PAX3   170000 perm   52 sec   (3296 perm/sec)   p_kst 3.805882e-03   p_cons 2.976000e-01   p_joint 6.964706e-03

Joint ci ratio: 1.106668e-01	ci left: 6.538976e-03	ci right 7.310367e-03	k: 1245	n:180000
Cons ci ratio: 1.419599e-02	ci left: 2.954440e-01	ci right 2.996736e-01	k: 53560	n:180000
KS ci ratio: 1.504854e-01	ci left: 3.472875e-03	ci right 4.043291e-03	k: 675	n:180000
PAX3   180000 perm   55 sec   (3248 perm/sec)   p_kst 3.750000e-03   p_cons 2.975556e-01   p_joint 6.916667e-03

Joint ci ratio: 1.145444e-01	ci left: 5.775261e-03	ci right 6.482040e-03	k: 1163	n:190000
Cons ci ratio: 1.381695e-02	ci left: 2.955132e-01	ci right 2.996299e-01	k: 56538	n:190000
KS ci ratio: 1.473612e-01	ci left: 3.437031e-03	ci right 3.988808e-03	k: 704	n:190000
PAX3   190000 perm   59 sec   (3203 perm/sec)   p_kst 3.705263e-03   p_cons 2.975684e-01   p_joint 6.121053e-03

Joint ci ratio: 1.190699e-01	ci left: 5.068946e-03	ci right 5.715517e-03	k: 1077	n:200000
Cons ci ratio: 1.345145e-02	ci left: 2.960508e-01	ci right 3.000650e-01	k: 59611	n:200000
KS ci ratio: 1.439325e-01	ci left: 3.428984e-03	ci right 3.965559e-03	k: 738	n:200000
PAX3   200000 perm   63 sec   (3156 perm/sec)   p_kst 3.690000e-03   p_cons 2.980550e-01   p_joint 5.385000e-03

Joint ci ratio: 1.168718e-01	ci left: 5.017036e-03	ci right 5.644356e-03	k: 1118	n:210000
Cons ci ratio: 1.311766e-02	ci left: 2.964054e-01	ci right 3.003240e-01	k: 62656	n:210000
KS ci ratio: 1.403685e-01	ci left: 3.440217e-03	ci right 3.964105e-03	k: 776	n:210000
PAX3   210000 perm   67 sec   (3113 perm/sec)   p_kst 3.695238e-03   p_cons 2.983619e-01   p_joint 5.323810e-03

Joint ci ratio: 1.141498e-01	ci left: 5.027353e-03	ci right 5.640336e-03	k: 1172	n:220000
Cons ci ratio: 1.281462e-02	ci left: 2.964975e-01	ci right 3.003260e-01	k: 65650	n:220000
KS ci ratio: 1.363865e-01	ci left: 3.485702e-03	ci right 4.000236e-03	k: 822	n:220000
PAX3   220000 perm   72 sec   (3072 perm/sec)   p_kst 3.736364e-03   p_cons 2.984091e-01   p_joint 5.327273e-03

Joint ci ratio: 1.156084e-01	ci left: 4.686261e-03	ci right 5.265453e-03	k: 1143	n:230000
Cons ci ratio: 1.254821e-02	ci left: 2.960313e-01	ci right 2.997738e-01	k: 68517	n:230000
KS ci ratio: 1.330328e-01	ci left: 3.510608e-03	ci right 4.015069e-03	k: 864	n:230000
PAX3   230000 perm   76 sec   (3030 perm/sec)   p_kst 3.756522e-03   p_cons 2.979000e-01   p_joint 4.969565e-03

Joint ci ratio: 1.170161e-01	ci left: 4.381733e-03	ci right 4.930335e-03	k: 1116	n:240000
Cons ci ratio: 1.227533e-02	ci left: 2.963660e-01	ci right 3.000306e-01	k: 71567	n:240000
KS ci ratio: 1.302760e-01	ci left: 3.513422e-03	ci right 4.007015e-03	k: 901	n:240000
PAX3   240000 perm   80 sec   (2991 perm/sec)   p_kst 3.754167e-03   p_cons 2.981958e-01   p_joint 4.650000e-03

Joint ci ratio: 1.172910e-01	ci left: 4.187025e-03	ci right 4.712566e-03	k: 1111	n:250000
Cons ci ratio: 1.203859e-02	ci left: 2.960118e-01	ci right 2.996009e-01	k: 74451	n:250000
KS ci ratio: 1.272086e-01	ci left: 3.543220e-03	ci right 4.028395e-03	k: 945	n:250000
PAX3   250000 perm   85 sec   (2949 perm/sec)   p_kst 3.780000e-03   p_cons 2.978040e-01   p_joint 4.444000e-03

Joint ci ratio: 1.166706e-01	ci left: 4.070774e-03	ci right 4.578834e-03	k: 1123	n:260000
Cons ci ratio: 1.180829e-02	ci left: 2.959236e-01	ci right 2.994425e-01	k: 77397	n:260000
KS ci ratio: 1.246011e-01	ci left: 3.555945e-03	ci right 4.032145e-03	k: 985	n:260000
PAX3   260000 perm   89 sec   (2912 perm/sec)   p_kst 3.788462e-03   p_cons 2.976808e-01   p_joint 4.319231e-03

Joint ci ratio: 1.178974e-01	ci left: 3.837292e-03	ci right 4.321597e-03	k: 1100	n:270000
Cons ci ratio: 1.158713e-02	ci left: 2.959719e-01	ci right 2.994250e-01	k: 80378	n:270000
KS ci ratio: 1.220879e-01	ci left: 3.571412e-03	ci right 4.039339e-03	k: 1026	n:270000
PAX3   270000 perm   94 sec   (2874 perm/sec)   p_kst 3.800000e-03   p_cons 2.976963e-01   p_joint 4.074074e-03

Joint ci ratio: 1.204018e-01	ci left: 3.544288e-03	ci right 4.001792e-03	k: 1055	n:280000
Cons ci ratio: 1.138476e-02	ci left: 2.957678e-01	ci right 2.991578e-01	k: 83289	n:280000
KS ci ratio: 1.197772e-01	ci left: 3.582398e-03	ci right 4.042252e-03	k: 1066	n:280000
PAX3   280000 perm   99 sec   (2840 perm/sec)   p_kst 3.807143e-03   p_cons 2.974607e-01   p_joint 3.767857e-03

Joint ci ratio: 1.182379e-01	ci left: 3.552541e-03	ci right 4.002293e-03	k: 1094	n:290000
Cons ci ratio: 1.118164e-02	ci left: 2.959879e-01	ci right 2.993196e-01	k: 86319	n:290000
KS ci ratio: 1.178604e-01	ci left: 3.575969e-03	ci right 4.027140e-03	k: 1101	n:290000
PAX3   290000 perm   103 sec   (2806 perm/sec)   p_kst 3.796552e-03   p_cons 2.976517e-01   p_joint 3.772414e-03

Joint ci ratio: 1.164447e-01	ci left: 3.544129e-03	ci right 3.985542e-03	k: 1128	n:300000
Cons ci ratio: 1.098998e-02	ci left: 2.961573e-01	ci right 2.994333e-01	k: 89338	n:300000
KS ci ratio: 1.160840e-01	ci left: 3.566786e-03	ci right 4.009551e-03	k: 1135	n:300000
PAX3   300000 perm   108 sec   (2772 perm/sec)   p_kst 3.783333e-03   p_cons 2.977933e-01   p_joint 3.760000e-03

Joint ci ratio: 1.153797e-01	ci left: 3.495575e-03	ci right 3.926688e-03	k: 1149	n:310000
Cons ci ratio: 1.080901e-02	ci left: 2.962710e-01	ci right 2.994940e-01	k: 92343	n:310000
KS ci ratio: 1.139951e-01	ci left: 3.583316e-03	ci right 4.019589e-03	k: 1177	n:310000
PAX3   310000 perm   113 sec   (2739 perm/sec)   p_kst 3.796774e-03   p_cons 2.978806e-01   p_joint 3.706452e-03

Joint ci ratio: 1.137598e-01	ci left: 3.486507e-03	ci right 3.910059e-03	k: 1182	n:320000
Cons ci ratio: 1.064036e-02	ci left: 2.962346e-01	ci right 2.994066e-01	k: 95302	n:320000
KS ci ratio: 1.121535e-01	ci left: 3.589766e-03	ci right 4.019297e-03	k: 1216	n:320000
PAX3   320000 perm   118 sec   (2706 perm/sec)   p_kst 3.800000e-03   p_cons 2.978188e-01   p_joint 3.693750e-03

Joint ci ratio: 1.124851e-01	ci left: 3.460356e-03	ci right 3.875708e-03	k: 1209	n:330000
Cons ci ratio: 1.047959e-02	ci left: 2.961916e-01	ci right 2.993149e-01	k: 98258	n:330000
KS ci ratio: 1.111110e-01	ci left: 3.548732e-03	ci right 3.969148e-03	k: 1239	n:330000
PAX3   330000 perm   123 sec   (2675 perm/sec)   p_kst 3.754545e-03   p_cons 2.977515e-01   p_joint 3.663636e-03

Joint ci ratio: 1.126783e-01	ci left: 3.347136e-03	ci right 3.749634e-03	k: 1205	n:340000
Cons ci ratio: 1.032495e-02	ci left: 2.961897e-01	ci right 2.992666e-01	k: 101227	n:340000
KS ci ratio: 1.095758e-01	ci left: 3.544457e-03	ci right 3.958190e-03	k: 1274	n:340000
PAX3   340000 perm   129 sec   (2644 perm/sec)   p_kst 3.747059e-03   p_cons 2.977265e-01   p_joint 3.544118e-03

Joint ci ratio: 1.026241e-01	ci left: 3.938315e-03	ci right 4.367101e-03	k: 1452	n:350000
Cons ci ratio: 1.017452e-02	ci left: 2.962881e-01	ci right 2.993209e-01	k: 104231	n:350000
KS ci ratio: 1.081439e-01	ci left: 3.537684e-03	ci right 3.944886e-03	k: 1308	n:350000
PAX3   350000 perm   134 sec   (2609 perm/sec)   p_kst 3.737143e-03   p_cons 2.978029e-01   p_joint 4.148571e-03

Joint ci ratio: 1.029507e-01	ci left: 3.804547e-03	ci right 4.220166e-03	k: 1443	n:360000
Cons ci ratio: 1.003529e-02	ci left: 2.961816e-01	ci right 2.991716e-01	k: 107163	n:360000
KS ci ratio: 1.062518e-01	ci left: 3.566473e-03	ci right 3.969358e-03	k: 1355	n:360000
PAX3   360000 perm   140 sec   (2580 perm/sec)   p_kst 3.763889e-03   p_cons 2.976750e-01   p_joint 4.008333e-03

Joint ci ratio: 1.017605e-01	ci left: 3.791259e-03	ci right 4.200353e-03	k: 1477	n:370000
Cons ci ratio: 9.897451e-03	ci left: 2.962566e-01	ci right 2.992060e-01	k: 110160	n:370000
KS ci ratio: 1.049448e-01	ci left: 3.559546e-03	ci right 3.956397e-03	k: 1389	n:370000
PAX3   370000 perm   145 sec   (2552 perm/sec)   p_kst 3.754054e-03   p_cons 2.977297e-01   p_joint 3.991892e-03

Joint ci ratio: 1.024995e-01	ci left: 3.637623e-03	ci right 4.033160e-03	k: 1456	n:380000
Cons ci ratio: 9.766189e-03	ci left: 2.962832e-01	ci right 2.991936e-01	k: 113140	n:380000
KS ci ratio: 1.036118e-01	ci left: 3.558139e-03	ci right 3.949488e-03	k: 1425	n:380000
PAX3   380000 perm   151 sec   (2524 perm/sec)   p_kst 3.750000e-03   p_cons 2.977368e-01   p_joint 3.831579e-03

Joint ci ratio: 1.008168e-01	ci left: 3.666800e-03	ci right 4.058577e-03	k: 1505	n:390000
Cons ci ratio: 9.642024e-03	ci left: 2.962216e-01	ci right 2.990942e-01	k: 116086	n:390000
KS ci ratio: 1.018401e-01	ci left: 3.591819e-03	ci right 3.979713e-03	k: 1475	n:390000
PAX3   390000 perm   156 sec   (2496 perm/sec)   p_kst 3.782051e-03   p_cons 2.976564e-01   p_joint 3.858974e-03

Joint ci ratio: 9.601265e-02	ci left: 3.950686e-03	ci right 4.351549e-03	k: 1659	n:400000
Cons ci ratio: 9.522534e-03	ci left: 2.961609e-01	ci right 2.989970e-01	k: 119031	n:400000
KS ci ratio: 1.007210e-01	ci left: 3.582433e-03	ci right 3.964811e-03	k: 1508	n:400000
PAX3   400000 perm   162 sec   (2470 perm/sec)   p_kst 3.770000e-03   p_cons 2.975775e-01   p_joint 4.147500e-03

Joint ci ratio: 9.723060e-02	ci left: 3.756726e-03	ci right 4.143019e-03	k: 1618	n:410000
Cons ci ratio: 9.399974e-03	ci left: 2.964321e-01	ci right 2.992341e-01	k: 122111	n:410000
KS ci ratio: 9.963803e-02	ci left: 3.573527e-03	ci right 3.950613e-03	k: 1541	n:410000
PAX3   410000 perm   168 sec   (2443 perm/sec)   p_kst 3.758537e-03   p_cons 2.978317e-01   p_joint 3.946341e-03

Outputting figure to mutsig2_images.part000000000126/PAX3.6_1687_410000_0.0037585_0.29783_0.0039463.png
                gene_name: PAX3
               theta_stop: 0.100 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0041 

Current progress: 46 percent done.
PAX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
Cons ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
KS ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
PAX5   10000 perm   2 sec   (5954 perm/sec)   p_kst 2.889000e-01   p_cons 7.063000e-01   p_joint 4.366000e-01

Outputting figure to mutsig2_images.part000000000126/PAX5.6_1216_10000_0.2889_0.7063_0.4366.png
                gene_name: PAX5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 48 percent done.
PBRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
Cons ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
KS ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
PBRM1   10000 perm   2 sec   (4040 perm/sec)   p_kst 6.601000e-01   p_cons 1.378000e-01   p_joint 5.071000e-01

Outputting figure to mutsig2_images.part000000000126/PBRM1.6_5021_10000_0.6601_0.1378_0.5071.png
                gene_name: PBRM1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 49 percent done.
PARP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
Cons ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
KS ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
PARP9   10000 perm   2 sec   (4887 perm/sec)   p_kst 7.371000e-01   p_cons 2.808000e-01   p_joint 5.955000e-01

Outputting figure to mutsig2_images.part000000000126/PARP9.5_2658_10000_0.7371_0.2808_0.5955.png
                gene_name: PARP9
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 51 percent done.
PBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
PBX2   10000 perm   2 sec   (5487 perm/sec)   p_kst 3.974000e-01   p_cons 7.360000e-02   p_joint 1.539000e-01

Joint ci ratio: 5.812972e-02	ci left: 1.798374e-01	ci right 1.906543e-01	k: 3704	n:20000
Cons ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
KS ci ratio: 3.419013e-02	ci left: 3.897609e-01	ci right 4.033692e-01	k: 7931	n:20000
PBX2   20000 perm   4 sec   (4819 perm/sec)   p_kst 3.965500e-01   p_cons 7.400000e-02   p_joint 1.852000e-01

Outputting figure to mutsig2_images.part000000000126/PBX2.5_1329_20000_0.39655_0.074_0.1852.png
                gene_name: PBX2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 52 percent done.
PCCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
PCCA   10000 perm   2 sec   (5241 perm/sec)   p_kst 3.350000e-02   p_cons 7.795000e-01   p_joint 6.820000e-02

Joint ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
Cons ci ratio: 1.468027e-02	ci left: 7.751522e-01	ci right 7.866660e-01	k: 15619	n:20000
KS ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
PCCA   20000 perm   4 sec   (4563 perm/sec)   p_kst 3.595000e-02   p_cons 7.809500e-01   p_joint 7.340000e-02

Joint ci ratio: 8.581225e-02	ci left: 6.223591e-02	ci right 6.784869e-02	k: 1950	n:30000
Cons ci ratio: 1.174492e-02	ci left: 7.831625e-01	ci right 7.924484e-01	k: 23635	n:30000
KS ci ratio: 1.202071e-01	ci left: 3.217197e-02	ci right 3.631887e-02	k: 1026	n:30000
PCCA   30000 perm   7 sec   (4327 perm/sec)   p_kst 3.420000e-02   p_cons 7.878333e-01   p_joint 6.500000e-02

Joint ci ratio: 8.407059e-02	ci left: 4.937871e-02	ci right 5.373668e-02	k: 2061	n:40000
Cons ci ratio: 9.965947e-03	ci left: 7.905819e-01	ci right 7.985253e-01	k: 31783	n:40000
KS ci ratio: 1.057670e-01	ci left: 3.144137e-02	ci right 3.497682e-02	k: 1327	n:40000
PCCA   40000 perm   10 sec   (4141 perm/sec)   p_kst 3.317500e-02   p_cons 7.945750e-01   p_joint 5.152500e-02

Joint ci ratio: 7.654319e-02	ci left: 4.792910e-02	ci right 5.176337e-02	k: 2491	n:50000
Cons ci ratio: 8.900011e-03	ci left: 7.915149e-01	ci right 7.986108e-01	k: 39754	n:50000
KS ci ratio: 9.510600e-02	ci left: 3.129505e-02	ci right 3.443949e-02	k: 1642	n:50000
PCCA   50000 perm   12 sec   (4023 perm/sec)   p_kst 3.284000e-02   p_cons 7.950800e-01   p_joint 4.982000e-02

Outputting figure to mutsig2_images.part000000000126/PCCA.5_2283_50000_0.03284_0.79508_0.04982.png
                gene_name: PCCA
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 54 percent done.
PAPSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
Cons ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
KS ci ratio: 2.344649e-02	ci left: 7.277477e-01	ci right 7.451144e-01	k: 7365	n:10000
PAPSS2   10000 perm   2 sec   (5276 perm/sec)   p_kst 7.365000e-01   p_cons 8.770000e-02   p_joint 2.755000e-01

Joint ci ratio: 2.647499e-02	ci left: 5.159498e-01	ci right 5.298435e-01	k: 10458	n:20000
Cons ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
KS ci ratio: 1.651962e-02	ci left: 7.317458e-01	ci right 7.439850e-01	k: 14758	n:20000
PAPSS2   20000 perm   4 sec   (4624 perm/sec)   p_kst 7.379000e-01   p_cons 8.010000e-02   p_joint 5.229000e-01

Outputting figure to mutsig2_images.part000000000126/PAPSS2.4_1912_20000_0.7379_0.0801_0.5229.png
                gene_name: PAPSS2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 55 percent done.
PARN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
Cons ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
KS ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
PARN   10000 perm   2 sec   (5418 perm/sec)   p_kst 3.996000e-01   p_cons 3.989000e-01   p_joint 5.937000e-01

Outputting figure to mutsig2_images.part000000000126/PARN.4_2016_10000_0.3996_0.3989_0.5937.png
                gene_name: PARN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 57 percent done.
PATZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
PATZ1   10000 perm   2 sec   (5627 perm/sec)   p_kst 3.072000e-01   p_cons 7.640000e-02   p_joint 1.171000e-01

Joint ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
Cons ci ratio: 9.748302e-02	ci left: 7.114225e-02	ci right 7.848193e-02	k: 1495	n:20000
KS ci ratio: 4.102250e-02	ci left: 3.069736e-01	ci right 3.198806e-01	k: 6268	n:20000
PATZ1   20000 perm   4 sec   (4814 perm/sec)   p_kst 3.134000e-01   p_cons 7.475000e-02   p_joint 1.038000e-01

Outputting figure to mutsig2_images.part000000000126/PATZ1.4_2367_20000_0.3134_0.07475_0.1038.png
                gene_name: PATZ1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 58 percent done.
PAX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
Cons ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
KS ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
PAX6   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.172000e-01   p_cons 8.668000e-01   p_joint 5.251000e-01

Outputting figure to mutsig2_images.part000000000126/PAX6.4_1355_10000_0.4172_0.8668_0.5251.png
                gene_name: PAX6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 59 percent done.
PBLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
PBLD   10000 perm   2 sec   (6233 perm/sec)   p_kst 4.571000e-01   p_cons 1.700000e-03   p_joint 1.430000e-02

Joint ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 3.039199e-02	ci left: 4.471319e-01	ci right 4.609815e-01	k: 9081	n:20000
PBLD   20000 perm   4 sec   (5321 perm/sec)   p_kst 4.540500e-01   p_cons 1.100000e-03   p_joint 1.965000e-02

Joint ci ratio: 1.992804e-01	ci left: 1.146358e-02	ci right 1.403207e-02	k: 381	n:30000
Cons ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
KS ci ratio: 2.494367e-02	ci left: 4.458570e-01	ci right 4.571524e-01	k: 13545	n:30000
PBLD   30000 perm   6 sec   (5027 perm/sec)   p_kst 4.515000e-01   p_cons 9.666667e-04   p_joint 1.270000e-02

Joint ci ratio: 2.301523e-01	ci left: 6.371322e-03	ci right 8.051413e-03	k: 287	n:40000
Cons ci ratio: 6.355979e-01	ci left: 6.513664e-04	ci right 1.274768e-03	k: 37	n:40000
KS ci ratio: 2.150212e-02	ci left: 4.489121e-01	ci right 4.586947e-01	k: 18152	n:40000
PBLD   40000 perm   8 sec   (4830 perm/sec)   p_kst 4.538000e-01   p_cons 9.250000e-04   p_joint 7.175000e-03

Joint ci ratio: 2.279437e-01	ci left: 5.209804e-03	ci right 6.568527e-03	k: 293	n:50000
Cons ci ratio: 5.715163e-01	ci left: 6.736319e-04	ci right 1.226963e-03	k: 46	n:50000
KS ci ratio: 1.923457e-02	ci left: 4.493690e-01	ci right 4.581164e-01	k: 22687	n:50000
PBLD   50000 perm   11 sec   (4663 perm/sec)   p_kst 4.537400e-01   p_cons 9.200000e-04   p_joint 5.860000e-03

Joint ci ratio: 1.328652e-01	ci left: 1.334912e-02	ci right 1.526495e-02	k: 857	n:60000
Cons ci ratio: 5.283260e-01	ci left: 6.761778e-04	ci right 1.174144e-03	k: 54	n:60000
KS ci ratio: 1.755489e-02	ci left: 4.498603e-01	ci right 4.578442e-01	k: 27231	n:60000
PBLD   60000 perm   13 sec   (4534 perm/sec)   p_kst 4.538500e-01   p_cons 9.000000e-04   p_joint 1.428333e-02

Joint ci ratio: 1.416068e-01	ci left: 1.006128e-02	ci right 1.160824e-02	k: 757	n:70000
Cons ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
KS ci ratio: 1.625531e-02	ci left: 4.500781e-01	ci right 4.574685e-01	k: 31764	n:70000
PBLD   70000 perm   16 sec   (4421 perm/sec)   p_kst 4.537714e-01   p_cons 9.142857e-04   p_joint 1.081429e-02

Joint ci ratio: 1.544513e-01	ci left: 7.370292e-03	ci right 8.615786e-03	k: 638	n:80000
Cons ci ratio: 4.494384e-01	ci left: 7.374724e-04	ci right 1.175025e-03	k: 75	n:80000
KS ci ratio: 1.518738e-02	ci left: 4.509077e-01	ci right 4.578206e-01	k: 36349	n:80000
PBLD   80000 perm   19 sec   (4315 perm/sec)   p_kst 4.543625e-01   p_cons 9.375000e-04   p_joint 7.975000e-03

Joint ci ratio: 1.658800e-01	ci left: 5.654971e-03	ci right 6.688358e-03	k: 554	n:90000
Cons ci ratio: 4.380721e-01	ci left: 6.950046e-04	ci right 1.093855e-03	k: 79	n:90000
KS ci ratio: 1.431935e-02	ci left: 4.510874e-01	ci right 4.576044e-01	k: 40891	n:90000
PBLD   90000 perm   21 sec   (4226 perm/sec)   p_kst 4.543444e-01   p_cons 8.777778e-04   p_joint 6.155556e-03

Joint ci ratio: 1.575821e-01	ci left: 5.665202e-03	ci right 6.643775e-03	k: 614	n:100000
Cons ci ratio: 4.225206e-01	ci left: 6.790045e-04	ci right 1.050932e-03	k: 85	n:100000
KS ci ratio: 1.358879e-02	ci left: 4.511004e-01	ci right 4.572822e-01	k: 45419	n:100000
PBLD   100000 perm   24 sec   (4135 perm/sec)   p_kst 4.541900e-01   p_cons 8.500000e-04   p_joint 6.140000e-03

Joint ci ratio: 1.629044e-01	ci left: 4.809676e-03	ci right 5.671272e-03	k: 575	n:110000
Cons ci ratio: 3.918200e-01	ci left: 7.315339e-04	ci right 1.095610e-03	k: 99	n:110000
KS ci ratio: 1.296662e-02	ci left: 4.508546e-01	ci right 4.567478e-01	k: 49918	n:110000
PBLD   110000 perm   27 sec   (4055 perm/sec)   p_kst 4.538000e-01   p_cons 9.000000e-04   p_joint 5.227273e-03

Joint ci ratio: 1.636555e-01	ci left: 4.368823e-03	ci right 5.155404e-03	k: 570	n:120000
Cons ci ratio: 3.752958e-01	ci left: 7.383441e-04	ci right 1.086505e-03	k: 108	n:120000
KS ci ratio: 1.240397e-02	ci left: 4.514049e-01	ci right 4.570473e-01	k: 54507	n:120000
PBLD   120000 perm   30 sec   (3970 perm/sec)   p_kst 4.542250e-01   p_cons 9.000000e-04   p_joint 4.750000e-03

Joint ci ratio: 1.582125e-01	ci left: 4.328055e-03	ci right 5.078917e-03	k: 610	n:130000
Cons ci ratio: 3.591799e-01	ci left: 7.513768e-04	ci right 1.086914e-03	k: 118	n:130000
KS ci ratio: 1.191500e-02	ci left: 4.516137e-01	ci right 4.570345e-01	k: 59062	n:130000
PBLD   130000 perm   33 sec   (3893 perm/sec)   p_kst 4.543231e-01   p_cons 9.076923e-04   p_joint 4.692308e-03

Joint ci ratio: 1.582392e-01	ci left: 4.018856e-03	ci right 4.716202e-03	k: 610	n:140000
Cons ci ratio: 3.463227e-01	ci left: 7.562985e-04	ci right 1.079235e-03	k: 127	n:140000
KS ci ratio: 1.147766e-02	ci left: 4.518820e-01	ci right 4.571056e-01	k: 63629	n:140000
PBLD   140000 perm   37 sec   (3825 perm/sec)   p_kst 4.544929e-01   p_cons 9.071429e-04   p_joint 4.357143e-03

Joint ci ratio: 1.222612e-01	ci left: 6.390336e-03	ci right 7.228899e-03	k: 1020	n:150000
Cons ci ratio: 3.288023e-01	ci left: 7.913085e-04	ci right 1.108493e-03	k: 141	n:150000
KS ci ratio: 1.109280e-02	ci left: 4.517779e-01	ci right 4.568239e-01	k: 68145	n:150000
PBLD   150000 perm   40 sec   (3761 perm/sec)   p_kst 4.543000e-01   p_cons 9.400000e-04   p_joint 6.800000e-03

Joint ci ratio: 1.197181e-01	ci left: 6.257591e-03	ci right 7.060443e-03	k: 1064	n:160000
Cons ci ratio: 3.117035e-01	ci left: 8.338223e-04	ci right 1.147214e-03	k: 157	n:160000
KS ci ratio: 1.074002e-02	ci left: 4.518830e-01	ci right 4.567686e-01	k: 72692	n:160000
PBLD   160000 perm   43 sec   (3696 perm/sec)   p_kst 4.543250e-01   p_cons 9.812500e-04   p_joint 6.650000e-03

Joint ci ratio: 1.241591e-01	ci left: 5.467336e-03	ci right 6.196730e-03	k: 990	n:170000
Cons ci ratio: 3.022842e-01	ci left: 8.390678e-04	ci right 1.143070e-03	k: 167	n:170000
KS ci ratio: 1.042706e-02	ci left: 4.515900e-01	ci right 4.563292e-01	k: 77173	n:170000
PBLD   170000 perm   47 sec   (3625 perm/sec)   p_kst 4.539588e-01   p_cons 9.823529e-04   p_joint 5.823529e-03

Joint ci ratio: 9.671298e-02	ci left: 8.606815e-03	ci right 9.486884e-03	k: 1627	n:180000
Cons ci ratio: 2.912240e-01	ci left: 8.593020e-04	ci right 1.157146e-03	k: 180	n:180000
KS ci ratio: 1.013630e-02	ci left: 4.515091e-01	ci right 4.561146e-01	k: 81686	n:180000
PBLD   180000 perm   50 sec   (3566 perm/sec)   p_kst 4.538111e-01   p_cons 1.000000e-03   p_joint 9.038889e-03

Joint ci ratio: 9.958278e-02	ci left: 7.686448e-03	ci right 8.497089e-03	k: 1536	n:190000
Cons ci ratio: 2.872869e-01	ci left: 8.384809e-04	ci right 1.124465e-03	k: 185	n:190000
KS ci ratio: 9.873725e-03	ci left: 4.511807e-01	ci right 4.556628e-01	k: 86150	n:190000
PBLD   190000 perm   54 sec   (3508 perm/sec)   p_kst 4.534211e-01   p_cons 9.736842e-04   p_joint 8.084211e-03

Joint ci ratio: 9.863759e-02	ci left: 7.448362e-03	ci right 8.226004e-03	k: 1566	n:200000
Cons ci ratio: 2.820309e-01	ci left: 8.290579e-04	ci right 1.105735e-03	k: 192	n:200000
KS ci ratio: 9.618307e-03	ci left: 4.515163e-01	ci right 4.558850e-01	k: 90740	n:200000
PBLD   200000 perm   58 sec   (3454 perm/sec)   p_kst 4.537000e-01   p_cons 9.600000e-04   p_joint 7.830000e-03

Joint ci ratio: 9.824638e-02	ci left: 7.154006e-03	ci right 7.897780e-03	k: 1579	n:210000
Cons ci ratio: 2.749964e-01	ci left: 8.338732e-04	ci right 1.104016e-03	k: 202	n:210000
KS ci ratio: 9.392914e-03	ci left: 4.512310e-01	ci right 4.554941e-01	k: 95206	n:210000
PBLD   210000 perm   62 sec   (3404 perm/sec)   p_kst 4.533619e-01   p_cons 9.619048e-04   p_joint 7.519048e-03

Joint ci ratio: 9.697343e-02	ci left: 7.015047e-03	ci right 7.734387e-03	k: 1621	n:220000
Cons ci ratio: 2.697339e-01	ci left: 8.298504e-04	ci right 1.092675e-03	k: 210	n:220000
KS ci ratio: 9.172300e-03	ci left: 4.515317e-01	ci right 4.556968e-01	k: 99795	n:220000
PBLD   220000 perm   66 sec   (3354 perm/sec)   p_kst 4.536136e-01   p_cons 9.545455e-04   p_joint 7.368182e-03

Joint ci ratio: 9.677901e-02	ci left: 6.739696e-03	ci right 7.429335e-03	k: 1628	n:230000
Cons ci ratio: 2.623748e-01	ci left: 8.424654e-04	ci right 1.100812e-03	k: 222	n:230000
KS ci ratio: 8.972747e-03	ci left: 4.514639e-01	ci right 4.555373e-01	k: 104305	n:230000
PBLD   230000 perm   70 sec   (3304 perm/sec)   p_kst 4.535000e-01   p_cons 9.652174e-04   p_joint 7.078261e-03

Joint ci ratio: 8.608062e-02	ci left: 8.197744e-03	ci right 8.939198e-03	k: 2055	n:240000
Cons ci ratio: 2.572357e-01	ci left: 8.424209e-04	ci right 1.094881e-03	k: 231	n:240000
KS ci ratio: 8.783533e-03	ci left: 4.515234e-01	ci right 4.555110e-01	k: 108844	n:240000
PBLD   240000 perm   74 sec   (3257 perm/sec)   p_kst 4.535167e-01   p_cons 9.625000e-04   p_joint 8.562500e-03

Joint ci ratio: 8.455408e-02	ci left: 8.163427e-03	ci right 8.888036e-03	k: 2130	n:250000
Cons ci ratio: 2.518646e-01	ci left: 8.461726e-04	ci right 1.093632e-03	k: 241	n:250000
KS ci ratio: 8.599211e-03	ci left: 4.519589e-01	ci right 4.558661e-01	k: 113478	n:250000
PBLD   250000 perm   78 sec   (3211 perm/sec)   p_kst 4.539120e-01   p_cons 9.640000e-04   p_joint 8.520000e-03

Joint ci ratio: 8.967294e-02	ci left: 6.968843e-03	ci right 7.626827e-03	k: 1896	n:260000
Cons ci ratio: 2.488010e-01	ci left: 8.352562e-04	ci right 1.076092e-03	k: 247	n:260000
KS ci ratio: 8.434651e-03	ci left: 4.518542e-01	ci right 4.556853e-01	k: 117980	n:260000
PBLD   260000 perm   82 sec   (3166 perm/sec)   p_kst 4.537692e-01   p_cons 9.500000e-04   p_joint 7.292308e-03

Joint ci ratio: 8.909581e-02	ci left: 6.801235e-03	ci right 7.439044e-03	k: 1921	n:270000
Cons ci ratio: 2.448834e-01	ci left: 8.321176e-04	ci right 1.067696e-03	k: 255	n:270000
KS ci ratio: 8.278819e-03	ci left: 4.517801e-01	ci right 4.555395e-01	k: 122488	n:270000
PBLD   270000 perm   86 sec   (3123 perm/sec)   p_kst 4.536593e-01   p_cons 9.444444e-04   p_joint 7.114815e-03

Joint ci ratio: 8.894428e-02	ci left: 6.582744e-03	ci right 7.198958e-03	k: 1928	n:280000
Cons ci ratio: 2.429947e-01	ci left: 8.158107e-04	ci right 1.044722e-03	k: 259	n:280000
KS ci ratio: 8.134949e-03	ci left: 4.514905e-01	ci right 4.551819e-01	k: 126934	n:280000
PBLD   280000 perm   91 sec   (3080 perm/sec)   p_kst 4.533357e-01   p_cons 9.250000e-04   p_joint 6.885714e-03

Joint ci ratio: 9.119475e-02	ci left: 6.042209e-03	ci right 6.622896e-03	k: 1835	n:290000
Cons ci ratio: 2.371371e-01	ci left: 8.298116e-04	ci right 1.056215e-03	k: 272	n:290000
KS ci ratio: 7.994427e-03	ci left: 4.514628e-01	ci right 4.550899e-01	k: 131450	n:290000
PBLD   290000 perm   95 sec   (3039 perm/sec)   p_kst 4.532759e-01   p_cons 9.379310e-04   p_joint 6.327586e-03

Joint ci ratio: 8.955077e-02	ci left: 6.062348e-03	ci right 6.633918e-03	k: 1903	n:300000
Cons ci ratio: 2.324987e-01	ci left: 8.366614e-04	ci right 1.059827e-03	k: 283	n:300000
KS ci ratio: 7.861738e-03	ci left: 4.513875e-01	ci right 4.549534e-01	k: 135951	n:300000
PBLD   300000 perm   100 sec   (2998 perm/sec)   p_kst 4.531700e-01   p_cons 9.433333e-04   p_joint 6.343333e-03

Joint ci ratio: 8.093885e-02	ci left: 7.205607e-03	ci right 7.816557e-03	k: 2327	n:310000
Cons ci ratio: 2.269700e-01	ci left: 8.522356e-04	ci right 1.073394e-03	k: 297	n:310000
KS ci ratio: 7.735393e-03	ci left: 4.513207e-01	ci right 4.548286e-01	k: 140453	n:310000
PBLD   310000 perm   105 sec   (2960 perm/sec)   p_kst 4.530742e-01   p_cons 9.580645e-04   p_joint 7.506452e-03

Joint ci ratio: 7.959904e-02	ci left: 7.222354e-03	ci right 7.824116e-03	k: 2406	n:320000
Cons ci ratio: 2.236185e-01	ci left: 8.521411e-04	ci right 1.069560e-03	k: 306	n:320000
KS ci ratio: 7.612501e-03	ci left: 4.514179e-01	ci right 4.548705e-01	k: 145006	n:320000
PBLD   320000 perm   110 sec   (2921 perm/sec)   p_kst 4.531438e-01   p_cons 9.562500e-04   p_joint 7.518750e-03

Joint ci ratio: 7.284024e-02	ci left: 8.382980e-03	ci right 9.019632e-03	k: 2870	n:330000
Cons ci ratio: 2.211128e-01	ci left: 8.463491e-04	ci right 1.059541e-03	k: 313	n:330000
KS ci ratio: 7.496844e-03	ci left: 4.514066e-01	ci right 4.548064e-01	k: 149525	n:330000
PBLD   330000 perm   114 sec   (2884 perm/sec)   p_kst 4.531061e-01   p_cons 9.484848e-04   p_joint 8.696970e-03

Joint ci ratio: 7.173661e-02	ci left: 8.393456e-03	ci right 9.020843e-03	k: 2959	n:340000
Cons ci ratio: 2.170043e-01	ci left: 8.548147e-04	ci right 1.065605e-03	k: 325	n:340000
KS ci ratio: 7.387268e-03	ci left: 4.513316e-01	ci right 4.546810e-01	k: 154022	n:340000
PBLD   340000 perm   119 sec   (2850 perm/sec)   p_kst 4.530059e-01   p_cons 9.558824e-04   p_joint 8.702941e-03

Joint ci ratio: 7.172118e-02	ci left: 8.159219e-03	ci right 8.768961e-03	k: 2961	n:350000
Cons ci ratio: 2.134329e-01	ci left: 8.601263e-04	ci right 1.068279e-03	k: 336	n:350000
KS ci ratio: 7.276317e-03	ci left: 4.516726e-01	ci right 4.549739e-01	k: 158663	n:350000
PBLD   350000 perm   124 sec   (2815 perm/sec)   p_kst 4.533229e-01   p_cons 9.600000e-04   p_joint 8.460000e-03

Joint ci ratio: 6.908579e-02	ci left: 8.557549e-03	ci right 9.172618e-03	k: 3190	n:360000
Cons ci ratio: 2.112509e-01	ci left: 8.546441e-04	ci right 1.059081e-03	k: 343	n:360000
KS ci ratio: 7.175158e-03	ci left: 4.516534e-01	ci right 4.549085e-01	k: 163181	n:360000
PBLD   360000 perm   129 sec   (2782 perm/sec)   p_kst 4.532806e-01   p_cons 9.527778e-04   p_joint 8.861111e-03

Joint ci ratio: 6.045636e-02	ci left: 1.089534e-02	ci right 1.157721e-02	k: 4156	n:370000
Cons ci ratio: 2.067890e-01	ci left: 8.699651e-04	ci right 1.073116e-03	k: 358	n:370000
KS ci ratio: 7.079070e-03	ci left: 4.515680e-01	ci right 4.547787e-01	k: 167674	n:370000
PBLD   370000 perm   135 sec   (2747 perm/sec)   p_kst 4.531730e-01   p_cons 9.675676e-04   p_joint 1.123243e-02

Joint ci ratio: 6.297135e-02	ci left: 9.776736e-03	ci right 1.041498e-02	k: 3835	n:380000
Cons ci ratio: 2.031428e-01	ci left: 8.795265e-04	ci right 1.080839e-03	k: 371	n:380000
KS ci ratio: 6.988336e-03	ci left: 4.513743e-01	ci right 4.545423e-01	k: 172124	n:380000
PBLD   380000 perm   140 sec   (2714 perm/sec)   p_kst 4.529579e-01   p_cons 9.763158e-04   p_joint 1.009211e-02

Joint ci ratio: 6.217432e-02	ci left: 9.775925e-03	ci right 1.040575e-02	k: 3934	n:390000
Cons ci ratio: 2.007293e-01	ci left: 8.788846e-04	ci right 1.077368e-03	k: 380	n:390000
KS ci ratio: 6.899288e-03	ci left: 4.513138e-01	ci right 4.544408e-01	k: 176622	n:390000
PBLD   390000 perm   145 sec   (2682 perm/sec)   p_kst 4.528769e-01   p_cons 9.743590e-04   p_joint 1.008718e-02

Joint ci ratio: 6.502037e-02	ci left: 8.712102e-03	ci right 9.300044e-03	k: 3601	n:400000
Cons ci ratio: 1.973892e-01	ci left: 8.877932e-04	ci right 1.084551e-03	k: 393	n:400000
KS ci ratio: 6.810536e-03	ci left: 4.514765e-01	ci right 4.545642e-01	k: 181208	n:400000
PBLD   400000 perm   151 sec   (2652 perm/sec)   p_kst 4.530200e-01   p_cons 9.825000e-04   p_joint 9.002500e-03

Joint ci ratio: 6.423176e-02	ci left: 8.713177e-03	ci right 9.293794e-03	k: 3690	n:410000
Cons ci ratio: 1.949309e-01	ci left: 8.893321e-04	ci right 1.083685e-03	k: 403	n:410000
KS ci ratio: 6.729293e-03	ci left: 4.513242e-01	ci right 4.543740e-01	k: 185668	n:410000
PBLD   410000 perm   156 sec   (2623 perm/sec)   p_kst 4.528488e-01   p_cons 9.829268e-04   p_joint 9.000000e-03

Joint ci ratio: 6.359010e-02	ci left: 8.681433e-03	ci right 9.253943e-03	k: 3765	n:420000
Cons ci ratio: 1.925623e-01	ci left: 8.908122e-04	ci right 1.082846e-03	k: 413	n:420000
KS ci ratio: 6.649195e-03	ci left: 4.513056e-01	ci right 4.543188e-01	k: 190181	n:420000
PBLD   420000 perm   162 sec   (2595 perm/sec)   p_kst 4.528119e-01   p_cons 9.833333e-04   p_joint 8.964286e-03

Joint ci ratio: 6.214008e-02	ci left: 8.884726e-03	ci right 9.456801e-03	k: 3942	n:430000
Cons ci ratio: 1.880708e-01	ci left: 9.143926e-04	ci right 1.106387e-03	k: 433	n:430000
KS ci ratio: 6.569640e-03	ci left: 4.514578e-01	ci right 4.544358e-01	k: 194767	n:430000
PBLD   430000 perm   168 sec   (2565 perm/sec)   p_kst 4.529465e-01   p_cons 1.006977e-03   p_joint 9.167442e-03

Joint ci ratio: 6.146601e-02	ci left: 8.877471e-03	ci right 9.442658e-03	k: 4029	n:440000
Cons ci ratio: 1.851081e-01	ci left: 9.239434e-04	ci right 1.114544e-03	k: 447	n:440000
KS ci ratio: 6.493945e-03	ci left: 4.515215e-01	ci right 4.544655e-01	k: 199317	n:440000
PBLD   440000 perm   173 sec   (2537 perm/sec)   p_kst 4.529932e-01   p_cons 1.015909e-03   p_joint 9.156818e-03

Joint ci ratio: 6.079106e-02	ci left: 8.877136e-03	ci right 9.435878e-03	k: 4119	n:450000
Cons ci ratio: 1.828764e-01	ci left: 9.267300e-04	ci right 1.115345e-03	k: 458	n:450000
KS ci ratio: 6.420635e-03	ci left: 4.515959e-01	ci right 4.545069e-01	k: 203873	n:450000
PBLD   450000 perm   179 sec   (2510 perm/sec)   p_kst 4.530511e-01   p_cons 1.017778e-03   p_joint 9.153333e-03

Joint ci ratio: 5.441342e-02	ci left: 1.085284e-02	ci right 1.146203e-02	k: 5131	n:460000
Cons ci ratio: 1.816935e-01	ci left: 9.190317e-04	ci right 1.104737e-03	k: 464	n:460000
KS ci ratio: 6.349975e-03	ci left: 4.516498e-01	ci right 4.545290e-01	k: 208421	n:460000
PBLD   460000 perm   185 sec   (2483 perm/sec)   p_kst 4.530891e-01   p_cons 1.008696e-03   p_joint 1.115435e-02

Joint ci ratio: 5.440924e-02	ci left: 1.062610e-02	ci right 1.122251e-02	k: 5133	n:470000
Cons ci ratio: 1.799606e-01	ci left: 9.177600e-04	ci right 1.101247e-03	k: 473	n:470000
KS ci ratio: 6.284241e-03	ci left: 4.514932e-01	ci right 4.543415e-01	k: 212871	n:470000
PBLD   470000 perm   191 sec   (2457 perm/sec)   p_kst 4.529170e-01   p_cons 1.006383e-03   p_joint 1.092128e-02

Joint ci ratio: 5.383033e-02	ci left: 1.063284e-02	ci right 1.122308e-02	k: 5244	n:480000
Cons ci ratio: 1.788330e-01	ci left: 9.105783e-04	ci right 1.091365e-03	k: 479	n:480000
KS ci ratio: 6.219173e-03	ci left: 4.514494e-01	ci right 4.542678e-01	k: 217372	n:480000
PBLD   480000 perm   197 sec   (2431 perm/sec)   p_kst 4.528583e-01   p_cons 9.979167e-04   p_joint 1.092500e-02

Joint ci ratio: 5.448052e-02	ci left: 1.017017e-02	ci right 1.074176e-02	k: 5122	n:490000
Cons ci ratio: 1.777264e-01	ci left: 9.036933e-04	ci right 1.081884e-03	k: 485	n:490000
KS ci ratio: 6.155121e-03	ci left: 4.514851e-01	ci right 4.542746e-01	k: 221911	n:490000
PBLD   490000 perm   204 sec   (2406 perm/sec)   p_kst 4.528796e-01   p_cons 9.897959e-04   p_joint 1.045306e-02

Joint ci ratio: 5.404041e-02	ci left: 1.013248e-02	ci right 1.069721e-02	k: 5206	n:500000
Cons ci ratio: 1.750447e-01	ci left: 9.142954e-04	ci right 1.091569e-03	k: 500	n:500000
KS ci ratio: 6.093033e-03	ci left: 4.515175e-01	ci right 4.542790e-01	k: 226449	n:500000
PBLD   500000 perm   210 sec   (2380 perm/sec)   p_kst 4.528980e-01   p_cons 1.000000e-03   p_joint 1.041200e-02

Joint ci ratio: 5.345278e-02	ci left: 1.015627e-02	ci right 1.071598e-02	k: 5321	n:510000
Cons ci ratio: 1.731540e-01	ci left: 9.169970e-04	ci right 1.092673e-03	k: 511	n:510000
KS ci ratio: 6.033408e-03	ci left: 4.514979e-01	ci right 4.542321e-01	k: 230961	n:510000
PBLD   510000 perm   216 sec   (2356 perm/sec)   p_kst 4.528647e-01   p_cons 1.001961e-03   p_joint 1.043333e-02

Joint ci ratio: 5.327142e-02	ci left: 1.003114e-02	ci right 1.058202e-02	k: 5358	n:520000
Cons ci ratio: 1.701870e-01	ci left: 9.324912e-04	ci right 1.107760e-03	k: 529	n:520000
KS ci ratio: 5.973783e-03	ci left: 4.516213e-01	ci right 4.543292e-01	k: 235547	n:520000
PBLD   520000 perm   223 sec   (2332 perm/sec)   p_kst 4.529750e-01   p_cons 1.017308e-03   p_joint 1.030385e-02

Joint ci ratio: 5.044311e-02	ci left: 1.098176e-02	ci right 1.155190e-02	k: 5970	n:530000
Cons ci ratio: 1.689172e-01	ci left: 9.293507e-04	ci right 1.102593e-03	k: 537	n:530000
KS ci ratio: 5.916657e-03	ci left: 4.516761e-01	ci right 4.543583e-01	k: 240099	n:530000
PBLD   530000 perm   230 sec   (2308 perm/sec)   p_kst 4.530170e-01   p_cons 1.013208e-03   p_joint 1.126415e-02

Joint ci ratio: 4.883630e-02	ci left: 1.150270e-02	ci right 1.208033e-02	k: 6366	n:540000
Cons ci ratio: 1.667608e-01	ci left: 9.369778e-04	ci right 1.109189e-03	k: 551	n:540000
KS ci ratio: 5.863002e-03	ci left: 4.515717e-01	ci right 4.542288e-01	k: 244566	n:540000
PBLD   540000 perm   236 sec   (2285 perm/sec)   p_kst 4.529000e-01   p_cons 1.020370e-03   p_joint 1.178889e-02

Joint ci ratio: 4.851120e-02	ci left: 1.144802e-02	ci right 1.201896e-02	k: 6452	n:550000
Cons ci ratio: 1.648308e-01	ci left: 9.425977e-04	ci right 1.113637e-03	k: 564	n:550000
KS ci ratio: 5.809010e-03	ci left: 4.516220e-01	ci right 4.542549e-01	k: 249116	n:550000
PBLD   550000 perm   243 sec   (2263 perm/sec)   p_kst 4.529382e-01   p_cons 1.025455e-03   p_joint 1.173091e-02

Joint ci ratio: 4.751339e-02	ci left: 1.172351e-02	ci right 1.229584e-02	k: 6724	n:560000
Cons ci ratio: 1.628253e-01	ci left: 9.497409e-04	ci right 1.119775e-03	k: 578	n:560000
KS ci ratio: 5.757520e-03	ci left: 4.515813e-01	ci right 4.541906e-01	k: 253616	n:560000
PBLD   560000 perm   250 sec   (2241 perm/sec)   p_kst 4.528857e-01   p_cons 1.032143e-03   p_joint 1.200714e-02

Joint ci ratio: 4.732302e-02	ci left: 1.161317e-02	ci right 1.217778e-02	k: 6779	n:570000
Cons ci ratio: 1.611635e-01	ci left: 9.532781e-04	ci right 1.122035e-03	k: 590	n:570000
KS ci ratio: 5.706911e-03	ci left: 4.515826e-01	ci right 4.541688e-01	k: 258139	n:570000
PBLD   570000 perm   257 sec   (2218 perm/sec)   p_kst 4.528754e-01   p_cons 1.035088e-03   p_joint 1.189298e-02

Joint ci ratio: 4.517856e-02	ci left: 1.252421e-02	ci right 1.310481e-02	k: 7431	n:580000
Cons ci ratio: 1.599504e-01	ci left: 9.517360e-04	ci right 1.118830e-03	k: 599	n:580000
KS ci ratio: 5.657829e-03	ci left: 4.515649e-01	ci right 4.541287e-01	k: 262651	n:580000
PBLD   580000 perm   264 sec   (2197 perm/sec)   p_kst 4.528466e-01   p_cons 1.032759e-03   p_joint 1.281207e-02

Joint ci ratio: 4.574471e-02	ci left: 1.201192e-02	ci right 1.257593e-02	k: 7252	n:590000
Cons ci ratio: 1.581159e-01	ci left: 9.583896e-04	ci right 1.124538e-03	k: 613	n:590000
KS ci ratio: 5.610319e-03	ci left: 4.515191e-01	ci right 4.540610e-01	k: 267146	n:590000
PBLD   590000 perm   271 sec   (2175 perm/sec)   p_kst 4.527898e-01   p_cons 1.038983e-03   p_joint 1.229153e-02

Joint ci ratio: 4.441709e-02	ci left: 1.253027e-02	ci right 1.310111e-02	k: 7688	n:600000
Cons ci ratio: 1.569698e-01	ci left: 9.568251e-04	ci right 1.121387e-03	k: 622	n:600000
KS ci ratio: 5.564229e-03	ci left: 4.514533e-01	ci right 4.539739e-01	k: 271628	n:600000
PBLD   600000 perm   279 sec   (2154 perm/sec)   p_kst 4.527133e-01   p_cons 1.036667e-03   p_joint 1.281333e-02

Joint ci ratio: 4.306377e-02	ci left: 1.311295e-02	ci right 1.369168e-02	k: 8174	n:610000
Cons ci ratio: 1.558483e-01	ci left: 9.553160e-04	ci right 1.118335e-03	k: 631	n:610000
KS ci ratio: 5.518691e-03	ci left: 4.514405e-01	ci right 4.539403e-01	k: 276141	n:610000
PBLD   610000 perm   286 sec   (2133 perm/sec)   p_kst 4.526902e-01   p_cons 1.034426e-03   p_joint 1.340000e-02

Joint ci ratio: 4.246202e-02	ci left: 1.327167e-02	ci right 1.384902e-02	k: 8406	n:620000
Cons ci ratio: 1.542694e-01	ci left: 9.600620e-04	ci right 1.122078e-03	k: 644	n:620000
KS ci ratio: 5.474341e-03	ci left: 4.514201e-01	ci right 4.538997e-01	k: 280649	n:620000
PBLD   620000 perm   293 sec   (2114 perm/sec)   p_kst 4.526597e-01   p_cons 1.038710e-03   p_joint 1.355806e-02

Joint ci ratio: 4.239770e-02	ci left: 1.310339e-02	ci right 1.367253e-02	k: 8433	n:630000
Cons ci ratio: 1.533218e-01	ci left: 9.570326e-04	ci right 1.117454e-03	k: 652	n:630000
KS ci ratio: 5.430522e-03	ci left: 4.514481e-01	ci right 4.539079e-01	k: 285187	n:630000
PBLD   630000 perm   301 sec   (2094 perm/sec)   p_kst 4.526778e-01   p_cons 1.034921e-03   p_joint 1.338571e-02

Joint ci ratio: 4.515996e-02	ci left: 1.137309e-02	ci right 1.190010e-02	k: 7446	n:640000
Cons ci ratio: 1.521612e-01	ci left: 9.571067e-04	ci right 1.116215e-03	k: 662	n:640000
KS ci ratio: 5.388401e-03	ci left: 4.514143e-01	ci right 4.538548e-01	k: 289686	n:640000
PBLD   640000 perm   308 sec   (2075 perm/sec)   p_kst 4.526344e-01   p_cons 1.034375e-03   p_joint 1.163438e-02

Joint ci ratio: 4.481530e-02	ci left: 1.137305e-02	ci right 1.189593e-02	k: 7561	n:650000
Cons ci ratio: 1.515913e-01	ci left: 9.497817e-04	ci right 1.107028e-03	k: 667	n:650000
KS ci ratio: 5.347162e-03	ci left: 4.513894e-01	ci right 4.538110e-01	k: 294190	n:650000
PBLD   650000 perm   316 sec   (2057 perm/sec)   p_kst 4.526000e-01   p_cons 1.026154e-03   p_joint 1.163231e-02

Joint ci ratio: 4.449308e-02	ci left: 1.136554e-02	ci right 1.188422e-02	k: 7671	n:660000
Cons ci ratio: 1.505804e-01	ci left: 9.485119e-04	ci right 1.104406e-03	k: 676	n:660000
KS ci ratio: 5.307229e-03	ci left: 4.513304e-01	ci right 4.537336e-01	k: 298671	n:660000
PBLD   660000 perm   324 sec   (2038 perm/sec)   p_kst 4.525318e-01   p_cons 1.024242e-03   p_joint 1.162273e-02

Joint ci ratio: 4.520256e-02	ci left: 1.084902e-02	ci right 1.135223e-02	k: 7436	n:670000
Cons ci ratio: 1.492632e-01	ci left: 9.515937e-04	ci right 1.106504e-03	k: 688	n:670000
KS ci ratio: 5.267480e-03	ci left: 4.513390e-01	ci right 4.537241e-01	k: 303196	n:670000
PBLD   670000 perm   332 sec   (2020 perm/sec)   p_kst 4.525313e-01   p_cons 1.026866e-03   p_joint 1.109851e-02

Joint ci ratio: 4.484793e-02	ci left: 1.086106e-02	ci right 1.136077e-02	k: 7554	n:680000
Cons ci ratio: 1.476640e-01	ci left: 9.588393e-04	ci right 1.113109e-03	k: 703	n:680000
KS ci ratio: 5.229355e-03	ci left: 4.512767e-01	ci right 4.536442e-01	k: 307673	n:680000
PBLD   680000 perm   340 sec   (2002 perm/sec)   p_kst 4.524603e-01   p_cons 1.033824e-03   p_joint 1.110882e-02

Joint ci ratio: 4.454558e-02	ci left: 1.085126e-02	ci right 1.134706e-02	k: 7657	n:690000
Cons ci ratio: 1.467292e-01	ci left: 9.575062e-04	ci right 1.110501e-03	k: 712	n:690000
KS ci ratio: 5.191848e-03	ci left: 4.512352e-01	ci right 4.535855e-01	k: 312163	n:690000
PBLD   690000 perm   348 sec   (1984 perm/sec)   p_kst 4.524101e-01   p_cons 1.031884e-03   p_joint 1.109710e-02

Joint ci ratio: 4.100547e-02	ci left: 1.262281e-02	ci right 1.315266e-02	k: 9020	n:700000
Cons ci ratio: 1.454093e-01	ci left: 9.617203e-04	ci right 1.113886e-03	k: 725	n:700000
KS ci ratio: 5.154216e-03	ci left: 4.512835e-01	ci right 4.536169e-01	k: 316715	n:700000
PBLD   700000 perm   356 sec   (1968 perm/sec)   p_kst 4.524500e-01   p_cons 1.035714e-03   p_joint 1.288571e-02

Joint ci ratio: 4.069512e-02	ci left: 1.263741e-02	ci right 1.316376e-02	k: 9158	n:710000
Cons ci ratio: 1.447136e-01	ci left: 9.576762e-04	ci right 1.108414e-03	k: 732	n:710000
KS ci ratio: 5.117899e-03	ci left: 4.512812e-01	ci right 4.535981e-01	k: 321232	n:710000
PBLD   710000 perm   364 sec   (1949 perm/sec)   p_kst 4.524394e-01   p_cons 1.030986e-03   p_joint 1.289859e-02

Joint ci ratio: 4.042696e-02	ci left: 1.262962e-02	ci right 1.315209e-02	k: 9280	n:720000
Cons ci ratio: 1.436398e-01	ci left: 9.591018e-04	ci right 1.108848e-03	k: 743	n:720000
KS ci ratio: 5.082197e-03	ci left: 4.512929e-01	ci right 4.535936e-01	k: 325759	n:720000
PBLD   720000 perm   373 sec   (1933 perm/sec)   p_kst 4.524431e-01   p_cons 1.031944e-03   p_joint 1.288889e-02

Joint ci ratio: 4.193688e-02	ci left: 1.157930e-02	ci right 1.207664e-02	k: 8633	n:730000
Cons ci ratio: 1.426841e-01	ci left: 9.591714e-04	ci right 1.107848e-03	k: 753	n:730000
KS ci ratio: 5.047301e-03	ci left: 4.512975e-01	ci right 4.535824e-01	k: 330281	n:730000
PBLD   730000 perm   381 sec   (1917 perm/sec)   p_kst 4.524397e-01   p_cons 1.031507e-03   p_joint 1.182603e-02

Joint ci ratio: 4.176443e-02	ci left: 1.151909e-02	ci right 1.201177e-02	k: 8705	n:740000
Cons ci ratio: 1.423078e-01	ci left: 9.514220e-04	ci right 1.098475e-03	k: 757	n:740000
KS ci ratio: 5.012254e-03	ci left: 4.513871e-01	ci right 4.536565e-01	k: 334866	n:740000
PBLD   740000 perm   389 sec   (1901 perm/sec)   p_kst 4.525216e-01   p_cons 1.022973e-03   p_joint 1.176351e-02

Joint ci ratio: 4.150804e-02	ci left: 1.150800e-02	ci right 1.199711e-02	k: 8813	n:750000
Cons ci ratio: 1.417483e-01	ci left: 9.464520e-04	ci right 1.092113e-03	k: 763	n:750000
KS ci ratio: 4.976894e-03	ci left: 4.515770e-01	ci right 4.538314e-01	k: 339528	n:750000
PBLD   750000 perm   398 sec   (1885 perm/sec)   p_kst 4.527040e-01   p_cons 1.017333e-03   p_joint 1.175067e-02

Joint ci ratio: 4.220465e-02	ci left: 1.098675e-02	ci right 1.146173e-02	k: 8529	n:760000
Cons ci ratio: 1.407387e-01	ci left: 9.479609e-04	ci right 1.092728e-03	k: 774	n:760000
KS ci ratio: 4.943821e-03	ci left: 4.516068e-01	ci right 4.538462e-01	k: 344072	n:760000
PBLD   760000 perm   407 sec   (1869 perm/sec)   p_kst 4.527263e-01   p_cons 1.018421e-03   p_joint 1.122237e-02

Joint ci ratio: 4.208570e-02	ci left: 1.090702e-02	ci right 1.137719e-02	k: 8578	n:770000
Cons ci ratio: 1.394841e-01	ci left: 9.531944e-04	ci right 1.097355e-03	k: 788	n:770000
KS ci ratio: 4.911295e-03	ci left: 4.516462e-01	ci right 4.538711e-01	k: 348624	n:770000
PBLD   770000 perm   415 sec   (1854 perm/sec)   p_kst 4.527584e-01   p_cons 1.023377e-03   p_joint 1.114026e-02

Joint ci ratio: 4.022849e-02	ci left: 1.178492e-02	ci right 1.227000e-02	k: 9380	n:780000
Cons ci ratio: 1.384352e-01	ci left: 9.558238e-04	ci right 1.099205e-03	k: 800	n:780000
KS ci ratio: 4.880337e-03	ci left: 4.515898e-01	ci right 4.538003e-01	k: 353102	n:780000
PBLD   780000 perm   424 sec   (1839 perm/sec)   p_kst 4.526949e-01   p_cons 1.025641e-03   p_joint 1.202564e-02

Joint ci ratio: 4.031649e-02	ci left: 1.158685e-02	ci right 1.206484e-02	k: 9341	n:790000
Cons ci ratio: 1.376640e-01	ci left: 9.547237e-04	ci right 1.097077e-03	k: 809	n:790000
KS ci ratio: 4.848941e-03	ci left: 4.516386e-01	ci right 4.538351e-01	k: 357662	n:790000
PBLD   790000 perm   433 sec   (1824 perm/sec)   p_kst 4.527367e-01   p_cons 1.024051e-03   p_joint 1.182405e-02

Joint ci ratio: 4.006212e-02	ci left: 1.158927e-02	ci right 1.206428e-02	k: 9460	n:800000
Cons ci ratio: 1.371574e-01	ci left: 9.500316e-04	ci right 1.091122e-03	k: 815	n:800000
KS ci ratio: 4.818143e-03	ci left: 4.516863e-01	ci right 4.538691e-01	k: 362222	n:800000
PBLD   800000 perm   442 sec   (1810 perm/sec)   p_kst 4.527775e-01   p_cons 1.018750e-03   p_joint 1.182500e-02

Joint ci ratio: 3.950690e-02	ci left: 1.177134e-02	ci right 1.224697e-02	k: 9726	n:810000
Cons ci ratio: 1.362421e-01	ci left: 9.514187e-04	ci right 1.091695e-03	k: 826	n:810000
KS ci ratio: 4.788140e-03	ci left: 4.517106e-01	ci right 4.538799e-01	k: 366764	n:810000
PBLD   810000 perm   451 sec   (1795 perm/sec)   p_kst 4.527951e-01   p_cons 1.019753e-03   p_joint 1.200741e-02

Joint ci ratio: 3.925938e-02	ci left: 1.177631e-02	ci right 1.224910e-02	k: 9849	n:820000
Cons ci ratio: 1.360783e-01	ci left: 9.421717e-04	ci right 1.080904e-03	k: 828	n:820000
KS ci ratio: 4.758175e-03	ci left: 4.517880e-01	ci right 4.539440e-01	k: 371350	n:820000
PBLD   820000 perm   461 sec   (1781 perm/sec)   p_kst 4.528659e-01   p_cons 1.009756e-03   p_joint 1.201098e-02

Joint ci ratio: 3.904421e-02	ci left: 1.176447e-02	ci right 1.223413e-02	k: 9958	n:830000
Cons ci ratio: 1.347834e-01	ci left: 9.494444e-04	ci right 1.087811e-03	k: 844	n:830000
KS ci ratio: 4.728179e-03	ci left: 4.519250e-01	ci right 4.540681e-01	k: 375987	n:830000
PBLD   830000 perm   470 sec   (1767 perm/sec)   p_kst 4.529964e-01   p_cons 1.016867e-03   p_joint 1.199759e-02

Joint ci ratio: 3.885599e-02	ci left: 1.173876e-02	ci right 1.220509e-02	k: 10055	n:840000
Cons ci ratio: 1.337581e-01	ci left: 9.530979e-04	ci right 1.090856e-03	k: 857	n:840000
KS ci ratio: 4.699747e-03	ci left: 4.519529e-01	ci right 4.540831e-01	k: 380535	n:840000
PBLD   840000 perm   479 sec   (1753 perm/sec)   p_kst 4.530179e-01   p_cons 1.020238e-03   p_joint 1.197024e-02

Joint ci ratio: 3.857635e-02	ci left: 1.177076e-02	ci right 1.223492e-02	k: 10201	n:850000
Cons ci ratio: 1.329088e-01	ci left: 9.543946e-04	ci right 1.091395e-03	k: 868	n:850000
KS ci ratio: 4.671722e-03	ci left: 4.519907e-01	ci right 4.541084e-01	k: 385092	n:850000
PBLD   850000 perm   489 sec   (1740 perm/sec)   p_kst 4.530494e-01   p_cons 1.021176e-03   p_joint 1.200118e-02

Joint ci ratio: 3.834770e-02	ci left: 1.177439e-02	ci right 1.223588e-02	k: 10323	n:860000
Cons ci ratio: 1.321507e-01	ci left: 9.545394e-04	ci right 1.090718e-03	k: 878	n:860000
KS ci ratio: 4.644650e-03	ci left: 4.519789e-01	ci right 4.540842e-01	k: 389607	n:860000
PBLD   860000 perm   498 sec   (1726 perm/sec)   p_kst 4.530314e-01   p_cons 1.020930e-03   p_joint 1.200349e-02

Joint ci ratio: 3.930742e-02	ci left: 1.108009e-02	ci right 1.152548e-02	k: 9832	n:870000
Cons ci ratio: 1.311104e-01	ci left: 9.591298e-04	ci right 1.094802e-03	k: 892	n:870000
KS ci ratio: 4.618740e-03	ci left: 4.518927e-01	ci right 4.539858e-01	k: 394057	n:870000
PBLD   870000 perm   508 sec   (1713 perm/sec)   p_kst 4.529391e-01   p_cons 1.025287e-03   p_joint 1.130115e-02

Joint ci ratio: 3.907356e-02	ci left: 1.108695e-02	ci right 1.152991e-02	k: 9950	n:880000
Cons ci ratio: 1.304547e-01	ci left: 9.581233e-04	ci right 1.092923e-03	k: 901	n:880000
KS ci ratio: 4.591963e-03	ci left: 4.519482e-01	ci right 4.540294e-01	k: 398630	n:880000
PBLD   880000 perm   518 sec   (1700 perm/sec)   p_kst 4.529886e-01   p_cons 1.023864e-03   p_joint 1.130682e-02

Joint ci ratio: 3.896140e-02	ci left: 1.102691e-02	ci right 1.146617e-02	k: 10008	n:890000
Cons ci ratio: 1.300233e-01	ci left: 9.538796e-04	ci right 1.087604e-03	k: 907	n:890000
KS ci ratio: 4.565667e-03	ci left: 4.520002e-01	ci right 4.540697e-01	k: 403201	n:890000
PBLD   890000 perm   528 sec   (1687 perm/sec)   p_kst 4.530348e-01   p_cons 1.019101e-03   p_joint 1.124494e-02

Joint ci ratio: 3.875686e-02	ci left: 1.102102e-02	ci right 1.145769e-02	k: 10114	n:900000
Cons ci ratio: 1.292428e-01	ci left: 9.551069e-04	ci right 1.088138e-03	k: 918	n:900000
KS ci ratio: 4.540806e-03	ci left: 4.519434e-01	ci right 4.540013e-01	k: 407675	n:900000
PBLD   900000 perm   537 sec   (1675 perm/sec)   p_kst 4.529722e-01   p_cons 1.020000e-03   p_joint 1.123778e-02

Joint ci ratio: 3.853454e-02	ci left: 1.102724e-02	ci right 1.146160e-02	k: 10231	n:910000
Cons ci ratio: 1.288232e-01	ci left: 9.509916e-04	ci right 1.082987e-03	k: 924	n:910000
KS ci ratio: 4.516165e-03	ci left: 4.519076e-01	ci right 4.539542e-01	k: 412167	n:910000
PBLD   910000 perm   548 sec   (1662 perm/sec)   p_kst 4.529308e-01   p_cons 1.015385e-03   p_joint 1.124286e-02

Joint ci ratio: 3.834786e-02	ci left: 1.101503e-02	ci right 1.144675e-02	k: 10331	n:920000
Cons ci ratio: 1.279272e-01	ci left: 9.543315e-04	ci right 1.085799e-03	k: 937	n:920000
KS ci ratio: 4.491143e-03	ci left: 4.519585e-01	ci right 4.539940e-01	k: 416738	n:920000
PBLD   920000 perm   558 sec   (1649 perm/sec)   p_kst 4.529761e-01   p_cons 1.018478e-03   p_joint 1.122935e-02

Joint ci ratio: 3.832770e-02	ci left: 1.090935e-02	ci right 1.133671e-02	k: 10343	n:930000
Cons ci ratio: 1.273853e-01	ci left: 9.523973e-04	ci right 1.083001e-03	k: 945	n:930000
KS ci ratio: 4.467501e-03	ci left: 4.519008e-01	ci right 4.539253e-01	k: 421209	n:930000
PBLD   930000 perm   568 sec   (1637 perm/sec)   p_kst 4.529129e-01   p_cons 1.016129e-03   p_joint 1.112151e-02

Joint ci ratio: 3.812739e-02	ci left: 1.090815e-02	ci right 1.133317e-02	k: 10452	n:940000
Cons ci ratio: 1.267837e-01	ci left: 9.515355e-04	ci right 1.081358e-03	k: 954	n:940000
KS ci ratio: 4.443905e-03	ci left: 4.518806e-01	ci right 4.538942e-01	k: 425714	n:940000
PBLD   940000 perm   578 sec   (1625 perm/sec)   p_kst 4.528872e-01   p_cons 1.014894e-03   p_joint 1.111915e-02

Joint ci ratio: 3.775168e-02	ci left: 1.101020e-02	ci right 1.143489e-02	k: 10660	n:950000
Cons ci ratio: 1.259945e-01	ci left: 9.537516e-04	ci right 1.083006e-03	k: 966	n:950000
KS ci ratio: 4.421073e-03	ci left: 4.518166e-01	ci right 4.538195e-01	k: 430177	n:950000
PBLD   950000 perm   589 sec   (1614 perm/sec)   p_kst 4.528179e-01   p_cons 1.016842e-03   p_joint 1.122105e-02

Joint ci ratio: 3.753907e-02	ci left: 1.102037e-02	ci right 1.144300e-02	k: 10781	n:960000
Cons ci ratio: 1.254123e-01	ci left: 9.528968e-04	ci right 1.081394e-03	k: 975	n:960000
KS ci ratio: 4.397470e-03	ci left: 4.518799e-01	ci right 4.538724e-01	k: 434761	n:960000
PBLD   960000 perm   599 sec   (1602 perm/sec)   p_kst 4.528760e-01   p_cons 1.015625e-03   p_joint 1.123021e-02

Joint ci ratio: 3.739773e-02	ci left: 1.099050e-02	ci right 1.141036e-02	k: 10863	n:970000
Cons ci ratio: 1.248381e-01	ci left: 9.520611e-04	ci right 1.079815e-03	k: 984	n:970000
KS ci ratio: 4.374678e-03	ci left: 4.518925e-01	ci right 4.538748e-01	k: 439297	n:970000
PBLD   970000 perm   610 sec   (1591 perm/sec)   p_kst 4.528835e-01   p_cons 1.014433e-03   p_joint 1.119897e-02

Joint ci ratio: 3.753638e-02	ci left: 1.079949e-02	ci right 1.121362e-02	k: 10785	n:980000
Cons ci ratio: 1.240844e-01	ci left: 9.542099e-04	ci right 1.081422e-03	k: 996	n:980000
KS ci ratio: 4.352891e-03	ci left: 4.518304e-01	ci right 4.538025e-01	k: 443760	n:980000
PBLD   980000 perm   620 sec   (1580 perm/sec)   p_kst 4.528163e-01   p_cons 1.016327e-03   p_joint 1.100510e-02

Joint ci ratio: 3.767825e-02	ci left: 1.061133e-02	ci right 1.101982e-02	k: 10706	n:990000
Cons ci ratio: 1.236513e-01	ci left: 9.514229e-04	ci right 1.077788e-03	k: 1003	n:990000
KS ci ratio: 4.330738e-03	ci left: 4.518484e-01	ci right 4.538105e-01	k: 448301	n:990000
PBLD   990000 perm   631 sec   (1570 perm/sec)   p_kst 4.528293e-01   p_cons 1.013131e-03   p_joint 1.081414e-02

Joint ci ratio: 3.748965e-02	ci left: 1.061221e-02	ci right 1.101864e-02	k: 10814	n:1000000
Cons ci ratio: 1.231008e-01	ci left: 9.506309e-04	ci right 1.076288e-03	k: 1012	n:1000000
KS ci ratio: 4.308493e-03	ci left: 4.519150e-01	ci right 4.538673e-01	k: 452891	n:1000000
PBLD   1000000 perm   642 sec   (1559 perm/sec)   p_kst 4.528910e-01   p_cons 1.012000e-03   p_joint 1.081400e-02

Joint ci ratio: 3.730903e-02	ci left: 1.061012e-02	ci right 1.101447e-02	k: 10919	n:1010000
Cons ci ratio: 1.225577e-01	ci left: 9.498558e-04	ci right 1.074816e-03	k: 1021	n:1010000
KS ci ratio: 4.286725e-03	ci left: 4.519645e-01	ci right 4.539071e-01	k: 457465	n:1010000
PBLD   1010000 perm   652 sec   (1548 perm/sec)   p_kst 4.529356e-01   p_cons 1.010891e-03   p_joint 1.081089e-02

Joint ci ratio: 3.714633e-02	ci left: 1.059934e-02	ci right 1.100148e-02	k: 11015	n:1020000
Cons ci ratio: 1.222593e-01	ci left: 9.452952e-04	ci right 1.069331e-03	k: 1026	n:1020000
KS ci ratio: 4.265865e-03	ci left: 4.519454e-01	ci right 4.538784e-01	k: 461970	n:1020000
PBLD   1020000 perm   663 sec   (1538 perm/sec)   p_kst 4.529118e-01   p_cons 1.005882e-03   p_joint 1.079902e-02

Joint ci ratio: 3.660142e-02	ci left: 1.081197e-02	ci right 1.121603e-02	k: 11343	n:1030000
Cons ci ratio: 1.212594e-01	ci left: 9.521200e-04	ci right 1.075956e-03	k: 1043	n:1030000
KS ci ratio: 4.244601e-03	ci left: 4.520092e-01	ci right 4.539328e-01	k: 466560	n:1030000
PBLD   1030000 perm   674 sec   (1528 perm/sec)   p_kst 4.529709e-01   p_cons 1.012621e-03   p_joint 1.101262e-02

Joint ci ratio: 3.705685e-02	ci left: 1.044789e-02	ci right 1.084331e-02	k: 11070	n:1040000
Cons ci ratio: 1.207401e-01	ci left: 9.513569e-04	ci right 1.074526e-03	k: 1052	n:1040000
KS ci ratio: 4.224527e-03	ci left: 4.519689e-01	ci right 4.538833e-01	k: 471043	n:1040000
PBLD   1040000 perm   685 sec   (1518 perm/sec)   p_kst 4.529260e-01   p_cons 1.011538e-03   p_joint 1.064423e-02

Joint ci ratio: 3.688239e-02	ci left: 1.044746e-02	ci right 1.084096e-02	k: 11175	n:1050000
Cons ci ratio: 1.200579e-01	ci left: 9.533808e-04	ci right 1.076065e-03	k: 1064	n:1050000
KS ci ratio: 4.204243e-03	ci left: 4.519875e-01	ci right 4.538927e-01	k: 475587	n:1050000
PBLD   1050000 perm   696 sec   (1508 perm/sec)   p_kst 4.529400e-01   p_cons 1.013333e-03   p_joint 1.064286e-02

Joint ci ratio: 3.626935e-02	ci left: 1.070227e-02	ci right 1.109853e-02	k: 11553	n:1060000
Cons ci ratio: 1.197214e-01	ci left: 9.498771e-04	ci right 1.071744e-03	k: 1070	n:1060000
KS ci ratio: 4.184329e-03	ci left: 4.519964e-01	ci right 4.538926e-01	k: 480121	n:1060000
PBLD   1060000 perm   708 sec   (1497 perm/sec)   p_kst 4.529443e-01   p_cons 1.009434e-03   p_joint 1.089906e-02

Joint ci ratio: 3.515326e-02	ci left: 1.128587e-02	ci right 1.169062e-02	k: 12291	n:1070000
Cons ci ratio: 1.188366e-01	ci left: 9.555071e-04	ci right 1.077127e-03	k: 1086	n:1070000
KS ci ratio: 4.164293e-03	ci left: 4.520527e-01	ci right 4.539400e-01	k: 484706	n:1070000
PBLD   1070000 perm   720 sec   (1486 perm/sec)   p_kst 4.529963e-01   p_cons 1.014953e-03   p_joint 1.148692e-02

Joint ci ratio: 3.429212e-02	ci left: 1.174959e-02	ci right 1.216044e-02	k: 12910	n:1080000
Cons ci ratio: 1.182938e-01	ci left: 9.556445e-04	ci right 1.076687e-03	k: 1096	n:1080000
KS ci ratio: 4.145372e-03	ci left: 4.520090e-01	ci right 4.538875e-01	k: 489184	n:1080000
PBLD   1080000 perm   732 sec   (1476 perm/sec)   p_kst 4.529481e-01   p_cons 1.014815e-03   p_joint 1.195370e-02

Joint ci ratio: 3.411267e-02	ci left: 1.176550e-02	ci right 1.217472e-02	k: 13046	n:1090000
Cons ci ratio: 1.177583e-01	ci left: 9.557805e-04	ci right 1.076254e-03	k: 1106	n:1090000
KS ci ratio: 4.126064e-03	ci left: 4.520432e-01	ci right 4.539131e-01	k: 493746	n:1090000
PBLD   1090000 perm   743 sec   (1467 perm/sec)   p_kst 4.529780e-01   p_cons 1.014679e-03   p_joint 1.196881e-02

Joint ci ratio: 3.393730e-02	ci left: 1.178022e-02	ci right 1.218781e-02	k: 13181	n:1100000
Cons ci ratio: 1.171251e-01	ci left: 9.576803e-04	ci right 1.077699e-03	k: 1118	n:1100000
KS ci ratio: 4.107401e-03	ci left: 4.520313e-01	ci right 4.538926e-01	k: 498258	n:1100000
PBLD   1100000 perm   755 sec   (1457 perm/sec)   p_kst 4.529618e-01   p_cons 1.016364e-03   p_joint 1.198273e-02

Joint ci ratio: 3.375563e-02	ci left: 1.180094e-02	ci right 1.220701e-02	k: 13323	n:1110000
Cons ci ratio: 1.165535e-01	ci left: 9.586729e-04	ci right 1.078190e-03	k: 1129	n:1110000
KS ci ratio: 4.088951e-03	ci left: 4.520241e-01	ci right 4.538771e-01	k: 502775	n:1110000
PBLD   1110000 perm   767 sec   (1448 perm/sec)   p_kst 4.529505e-01   p_cons 1.017117e-03   p_joint 1.200270e-02

Joint ci ratio: 3.373953e-02	ci left: 1.170796e-02	ci right 1.211064e-02	k: 13337	n:1120000
Cons ci ratio: 1.161433e-01	ci left: 9.570482e-04	ci right 1.075914e-03	k: 1137	n:1120000
KS ci ratio: 4.070366e-03	ci left: 4.520635e-01	ci right 4.539082e-01	k: 507344	n:1120000
PBLD   1120000 perm   778 sec   (1439 perm/sec)   p_kst 4.529857e-01   p_cons 1.015179e-03   p_joint 1.190804e-02

Joint ci ratio: 3.344194e-02	ci left: 1.181234e-02	ci right 1.221495e-02	k: 13574	n:1130000
Cons ci ratio: 1.156868e-01	ci left: 9.563124e-04	ci right 1.074588e-03	k: 1146	n:1130000
KS ci ratio: 4.051750e-03	ci left: 4.521367e-01	ci right 4.539732e-01	k: 511952	n:1130000
PBLD   1130000 perm   790 sec   (1430 perm/sec)   p_kst 4.530549e-01   p_cons 1.014159e-03   p_joint 1.201239e-02

Joint ci ratio: 3.394452e-02	ci left: 1.136684e-02	ci right 1.176021e-02	k: 13181	n:1140000
Cons ci ratio: 1.150862e-01	ci left: 9.581463e-04	ci right 1.075991e-03	k: 1158	n:1140000
KS ci ratio: 4.034301e-03	ci left: 4.520964e-01	ci right 4.539249e-01	k: 516432	n:1140000
PBLD   1140000 perm   803 sec   (1420 perm/sec)   p_kst 4.530105e-01   p_cons 1.015789e-03   p_joint 1.156228e-02

Joint ci ratio: 3.378201e-02	ci left: 1.137750e-02	ci right 1.176931e-02	k: 13308	n:1150000
Cons ci ratio: 1.142510e-01	ci left: 9.641734e-04	ci right 1.081841e-03	k: 1175	n:1150000
KS ci ratio: 4.016780e-03	ci left: 4.520934e-01	ci right 4.539138e-01	k: 520954	n:1150000
PBLD   1150000 perm   815 sec   (1412 perm/sec)   p_kst 4.530035e-01   p_cons 1.021739e-03   p_joint 1.157217e-02

Joint ci ratio: 3.362814e-02	ci left: 1.138371e-02	ci right 1.177391e-02	k: 13430	n:1160000
Cons ci ratio: 1.138645e-01	ci left: 9.625613e-04	ci right 1.079608e-03	k: 1183	n:1160000
KS ci ratio: 3.999311e-03	ci left: 4.521119e-01	ci right 4.539245e-01	k: 525501	n:1160000
PBLD   1160000 perm   827 sec   (1403 perm/sec)   p_kst 4.530181e-01   p_cons 1.019828e-03   p_joint 1.157759e-02

Joint ci ratio: 3.350888e-02	ci left: 1.136777e-02	ci right 1.175602e-02	k: 13526	n:1170000
Cons ci ratio: 1.132443e-01	ci left: 9.651299e-04	ci right 1.081807e-03	k: 1196	n:1170000
KS ci ratio: 3.981772e-03	ci left: 4.521669e-01	ci right 4.539718e-01	k: 530091	n:1170000
PBLD   1170000 perm   839 sec   (1394 perm/sec)   p_kst 4.530692e-01   p_cons 1.022222e-03   p_joint 1.156068e-02

Joint ci ratio: 3.268688e-02	ci left: 1.184466e-02	ci right 1.223909e-02	k: 14208	n:1180000
Cons ci ratio: 1.126342e-01	ci left: 9.676566e-04	ci right 1.083967e-03	k: 1209	n:1180000
KS ci ratio: 3.964828e-03	ci left: 4.521753e-01	ci right 4.539724e-01	k: 534627	n:1180000
PBLD   1180000 perm   851 sec   (1386 perm/sec)   p_kst 4.530737e-01   p_cons 1.024576e-03   p_joint 1.204068e-02

Joint ci ratio: 3.253594e-02	ci left: 1.185515e-02	ci right 1.224807e-02	k: 14340	n:1190000
Cons ci ratio: 1.122638e-01	ci left: 9.660586e-04	ci right 1.081770e-03	k: 1217	n:1190000
KS ci ratio: 3.948253e-03	ci left: 4.521641e-01	ci right 4.539537e-01	k: 539140	n:1190000
PBLD   1190000 perm   864 sec   (1378 perm/sec)   p_kst 4.530588e-01   p_cons 1.022689e-03   p_joint 1.205042e-02

Joint ci ratio: 3.243019e-02	ci left: 1.183405e-02	ci right 1.222498e-02	k: 14434	n:1200000
Cons ci ratio: 1.118514e-01	ci left: 9.652979e-04	ci right 1.080466e-03	k: 1226	n:1200000
KS ci ratio: 3.932479e-03	ci left: 4.520782e-01	ci right 4.538603e-01	k: 543563	n:1200000
PBLD   1200000 perm   876 sec   (1370 perm/sec)   p_kst 4.529692e-01   p_cons 1.021667e-03   p_joint 1.202833e-02

Joint ci ratio: 3.230859e-02	ci left: 1.182560e-02	ci right 1.221476e-02	k: 14543	n:1210000
Cons ci ratio: 1.111737e-01	ci left: 9.693713e-04	ci right 1.084278e-03	k: 1241	n:1210000
KS ci ratio: 3.916468e-03	ci left: 4.520475e-01	ci right 4.538222e-01	k: 548051	n:1210000
PBLD   1210000 perm   889 sec   (1362 perm/sec)   p_kst 4.529347e-01   p_cons 1.025620e-03   p_joint 1.201901e-02

Joint ci ratio: 3.296680e-02	ci left: 1.126766e-02	ci right 1.164614e-02	k: 13976	n:1220000
Cons ci ratio: 1.106846e-01	ci left: 9.701918e-04	ci right 1.084657e-03	k: 1252	n:1220000
KS ci ratio: 3.900373e-03	ci left: 4.520525e-01	ci right 4.538199e-01	k: 552582	n:1220000
PBLD   1220000 perm   902 sec   (1353 perm/sec)   p_kst 4.529361e-01   p_cons 1.026230e-03   p_joint 1.145574e-02

Joint ci ratio: 3.282965e-02	ci left: 1.127039e-02	ci right 1.164736e-02	k: 14093	n:1230000
Cons ci ratio: 1.105967e-01	ci left: 9.638850e-04	ci right 1.077510e-03	k: 1254	n:1230000
KS ci ratio: 3.884074e-03	ci left: 4.521086e-01	ci right 4.538688e-01	k: 557176	n:1230000
PBLD   1230000 perm   914 sec   (1346 perm/sec)   p_kst 4.529886e-01   p_cons 1.019512e-03   p_joint 1.145772e-02

Joint ci ratio: 3.190086e-02	ci left: 1.183869e-02	ci right 1.222327e-02	k: 14917	n:1240000
Cons ci ratio: 1.102460e-01	ci left: 9.623851e-04	ci right 1.075450e-03	k: 1262	n:1240000
KS ci ratio: 3.868600e-03	ci left: 4.520840e-01	ci right 4.538371e-01	k: 561671	n:1240000
PBLD   1240000 perm   927 sec   (1338 perm/sec)   p_kst 4.529605e-01   p_cons 1.017742e-03   p_joint 1.202984e-02

Joint ci ratio: 3.175623e-02	ci left: 1.185192e-02	ci right 1.223515e-02	k: 15053	n:1250000
Cons ci ratio: 1.098122e-01	ci left: 9.624658e-04	ci right 1.075067e-03	k: 1272	n:1250000
KS ci ratio: 3.853310e-03	ci left: 4.520599e-01	ci right 4.538059e-01	k: 566166	n:1250000
PBLD   1250000 perm   940 sec   (1330 perm/sec)   p_kst 4.529328e-01   p_cons 1.017600e-03   p_joint 1.204240e-02

Joint ci ratio: 3.163253e-02	ci left: 1.185076e-02	ci right 1.223244e-02	k: 15171	n:1260000
Cons ci ratio: 1.094688e-01	ci left: 9.610023e-04	ci right 1.073058e-03	k: 1280	n:1260000
KS ci ratio: 3.837941e-03	ci left: 4.520694e-01	ci right 4.538086e-01	k: 570703	n:1260000
PBLD   1260000 perm   953 sec   (1322 perm/sec)   p_kst 4.529389e-01   p_cons 1.015873e-03   p_joint 1.204048e-02

Joint ci ratio: 3.185148e-02	ci left: 1.159807e-02	ci right 1.197424e-02	k: 14967	n:1270000
Cons ci ratio: 1.088753e-01	ci left: 9.641580e-04	ci right 1.075933e-03	k: 1294	n:1270000
KS ci ratio: 3.822877e-03	ci left: 4.520631e-01	ci right 4.537954e-01	k: 575220	n:1270000
PBLD   1270000 perm   966 sec   (1315 perm/sec)   p_kst 4.529291e-01   p_cons 1.018898e-03   p_joint 1.178504e-02

Joint ci ratio: 3.172347e-02	ci left: 1.160124e-02	ci right 1.197597e-02	k: 15088	n:1280000
Cons ci ratio: 1.084158e-01	ci left: 9.649858e-04	ci right 1.076354e-03	k: 1305	n:1280000
KS ci ratio: 3.807862e-03	ci left: 4.520733e-01	ci right 4.537988e-01	k: 579758	n:1280000
PBLD   1280000 perm   979 sec   (1307 perm/sec)   p_kst 4.529359e-01   p_cons 1.019531e-03   p_joint 1.178750e-02

Joint ci ratio: 3.173984e-02	ci left: 1.150053e-02	ci right 1.187221e-02	k: 15074	n:1290000
Cons ci ratio: 1.078392e-01	ci left: 9.680646e-04	ci right 1.079157e-03	k: 1319	n:1290000
KS ci ratio: 3.792548e-03	ci left: 4.521454e-01	ci right 4.538641e-01	k: 584376	n:1290000
PBLD   1290000 perm   992 sec   (1300 perm/sec)   p_kst 4.530047e-01   p_cons 1.022481e-03   p_joint 1.168527e-02

Joint ci ratio: 3.134605e-02	ci left: 1.170056e-02	ci right 1.207392e-02	k: 15452	n:1300000
Cons ci ratio: 1.074735e-01	ci left: 9.673546e-04	ci right 1.077965e-03	k: 1328	n:1300000
KS ci ratio: 3.777418e-03	ci left: 4.522163e-01	ci right 4.539285e-01	k: 588994	n:1300000
PBLD   1300000 perm   1006 sec   (1292 perm/sec)   p_kst 4.530723e-01   p_cons 1.021538e-03   p_joint 1.188615e-02

Joint ci ratio: 3.127486e-02	ci left: 1.166502e-02	ci right 1.203638e-02	k: 15523	n:1310000
Cons ci ratio: 1.068321e-01	ci left: 9.718567e-04	ci right 1.082277e-03	k: 1344	n:1310000
KS ci ratio: 3.762751e-03	ci left: 4.522488e-01	ci right 4.539545e-01	k: 593563	n:1310000
PBLD   1310000 perm   1019 sec   (1285 perm/sec)   p_kst 4.531015e-01   p_cons 1.025954e-03   p_joint 1.184962e-02

Joint ci ratio: 3.119707e-02	ci left: 1.163527e-02	ci right 1.200475e-02	k: 15601	n:1320000
Cons ci ratio: 1.063586e-01	ci left: 9.733427e-04	ci right 1.083411e-03	k: 1356	n:1320000
KS ci ratio: 3.748586e-03	ci left: 4.522369e-01	ci right 4.539360e-01	k: 598074	n:1320000
PBLD   1320000 perm   1033 sec   (1278 perm/sec)   p_kst 4.530864e-01   p_cons 1.027273e-03   p_joint 1.181894e-02

Joint ci ratio: 3.104382e-02	ci left: 1.166268e-02	ci right 1.203118e-02	k: 15755	n:1330000
Cons ci ratio: 1.061634e-01	ci left: 9.696838e-04	ci right 1.079124e-03	k: 1361	n:1330000
KS ci ratio: 3.734064e-03	ci left: 4.522936e-01	ci right 4.539863e-01	k: 602676	n:1330000
PBLD   1330000 perm   1046 sec   (1271 perm/sec)   p_kst 4.531398e-01   p_cons 1.023308e-03   p_joint 1.184586e-02

Joint ci ratio: 3.092428e-02	ci left: 1.166598e-02	ci right 1.203315e-02	k: 15877	n:1340000
Cons ci ratio: 1.058144e-01	ci left: 9.689857e-04	ci right 1.077966e-03	k: 1370	n:1340000
KS ci ratio: 3.719759e-03	ci left: 4.523427e-01	ci right 4.540292e-01	k: 607269	n:1340000
PBLD   1340000 perm   1060 sec   (1264 perm/sec)   p_kst 4.531858e-01   p_cons 1.022388e-03   p_joint 1.184851e-02

Joint ci ratio: 3.048004e-02	ci left: 1.191919e-02	ci right 1.228884e-02	k: 16339	n:1350000
Cons ci ratio: 1.053162e-01	ci left: 9.711834e-04	ci right 1.079864e-03	k: 1383	n:1350000
KS ci ratio: 3.705940e-03	ci left: 4.523481e-01	ci right 4.540283e-01	k: 611804	n:1350000
PBLD   1350000 perm   1074 sec   (1257 perm/sec)   p_kst 4.531881e-01   p_cons 1.024444e-03   p_joint 1.210296e-02

Joint ci ratio: 3.036874e-02	ci left: 1.191911e-02	ci right 1.228738e-02	k: 16459	n:1360000
Cons ci ratio: 1.049378e-01	ci left: 9.712020e-04	ci right 1.079470e-03	k: 1393	n:1360000
KS ci ratio: 3.692382e-03	ci left: 4.523388e-01	ci right 4.540128e-01	k: 616319	n:1360000
PBLD   1360000 perm   1088 sec   (1250 perm/sec)   p_kst 4.531757e-01   p_cons 1.024265e-03   p_joint 1.210221e-02

Joint ci ratio: 3.025773e-02	ci left: 1.191976e-02	ci right 1.228668e-02	k: 16580	n:1370000
Cons ci ratio: 1.045261e-01	ci left: 9.719318e-04	ci right 1.079830e-03	k: 1404	n:1370000
KS ci ratio: 3.678550e-03	ci left: 4.523866e-01	ci right 4.540545e-01	k: 620912	n:1370000
PBLD   1370000 perm   1102 sec   (1243 perm/sec)   p_kst 4.532204e-01   p_cons 1.024818e-03   p_joint 1.210219e-02

Joint ci ratio: 3.014337e-02	ci left: 1.192400e-02	ci right 1.228964e-02	k: 16706	n:1380000
Cons ci ratio: 1.038627e-01	ci left: 9.775926e-04	ci right 1.085389e-03	k: 1422	n:1380000
KS ci ratio: 3.664979e-03	ci left: 4.524192e-01	ci right 4.540810e-01	k: 625485	n:1380000
PBLD   1380000 perm   1116 sec   (1236 perm/sec)   p_kst 4.532500e-01   p_cons 1.030435e-03   p_joint 1.210580e-02

Joint ci ratio: 3.003751e-02	ci left: 1.192247e-02	ci right 1.228676e-02	k: 16824	n:1390000
Cons ci ratio: 1.032475e-01	ci left: 9.824731e-04	ci right 1.090127e-03	k: 1439	n:1390000
KS ci ratio: 3.651827e-03	ci left: 4.524146e-01	ci right 4.540705e-01	k: 630007	n:1390000
PBLD   1390000 perm   1130 sec   (1230 perm/sec)   p_kst 4.532424e-01   p_cons 1.035252e-03   p_joint 1.210360e-02

Joint ci ratio: 2.993276e-02	ci left: 1.192096e-02	ci right 1.228392e-02	k: 16942	n:1400000
Cons ci ratio: 1.029976e-01	ci left: 9.803264e-04	ci right 1.087469e-03	k: 1446	n:1400000
KS ci ratio: 3.638790e-03	ci left: 4.524137e-01	ci right 4.540636e-01	k: 634534	n:1400000
PBLD   1400000 perm   1145 sec   (1223 perm/sec)   p_kst 4.532386e-01   p_cons 1.032857e-03   p_joint 1.210143e-02

Joint ci ratio: 2.982910e-02	ci left: 1.191948e-02	ci right 1.228111e-02	k: 17060	n:1410000
Cons ci ratio: 1.026083e-01	ci left: 9.809746e-04	ci right 1.087759e-03	k: 1457	n:1410000
KS ci ratio: 3.625902e-03	ci left: 4.524114e-01	ci right 4.540555e-01	k: 639059	n:1410000
PBLD   1410000 perm   1159 sec   (1217 perm/sec)   p_kst 4.532333e-01   p_cons 1.033333e-03   p_joint 1.209929e-02

Joint ci ratio: 2.973352e-02	ci left: 1.191243e-02	ci right 1.227266e-02	k: 17170	n:1420000
Cons ci ratio: 1.022234e-01	ci left: 9.816144e-04	ci right 1.088043e-03	k: 1468	n:1420000
KS ci ratio: 3.612724e-03	ci left: 4.524676e-01	ci right 4.541059e-01	k: 643667	n:1420000
PBLD   1420000 perm   1174 sec   (1210 perm/sec)   p_kst 4.532866e-01   p_cons 1.033803e-03   p_joint 1.209155e-02

Joint ci ratio: 2.846009e-02	ci left: 1.290664e-02	ci right 1.327995e-02	k: 18722	n:1430000
Cons ci ratio: 1.017053e-01	ci left: 9.849721e-04	ci right 1.091191e-03	k: 1483	n:1430000
KS ci ratio: 3.599825e-03	ci left: 4.525041e-01	ci right 4.541366e-01	k: 648248	n:1430000
PBLD   1430000 perm   1188 sec   (1204 perm/sec)   p_kst 4.533203e-01   p_cons 1.037063e-03   p_joint 1.309231e-02

Joint ci ratio: 2.835800e-02	ci left: 1.291009e-02	ci right 1.328215e-02	k: 18857	n:1440000
Cons ci ratio: 1.012965e-01	ci left: 9.862538e-04	ci right 1.092158e-03	k: 1495	n:1440000
KS ci ratio: 3.586974e-03	ci left: 4.525526e-01	ci right 4.541795e-01	k: 652847	n:1440000
PBLD   1440000 perm   1203 sec   (1197 perm/sec)   p_kst 4.533660e-01   p_cons 1.038194e-03   p_joint 1.309514e-02

Joint ci ratio: 2.812376e-02	ci left: 1.303541e-02	ci right 1.340792e-02	k: 19170	n:1450000
Cons ci ratio: 1.009932e-01	ci left: 9.855019e-04	ci right 1.090990e-03	k: 1504	n:1450000
KS ci ratio: 3.574487e-03	ci left: 4.525688e-01	ci right 4.541900e-01	k: 657400	n:1450000
PBLD   1450000 perm   1217 sec   (1191 perm/sec)   p_kst 4.533793e-01   p_cons 1.037241e-03   p_joint 1.322069e-02

Joint ci ratio: 2.807464e-02	ci left: 1.299237e-02	ci right 1.336299e-02	k: 19238	n:1460000
Cons ci ratio: 1.005597e-01	ci left: 9.874317e-04	ci right 1.092646e-03	k: 1517	n:1460000
KS ci ratio: 3.562214e-03	ci left: 4.525731e-01	ci right 4.541888e-01	k: 661936	n:1460000
PBLD   1460000 perm   1232 sec   (1185 perm/sec)   p_kst 4.533808e-01   p_cons 1.039041e-03   p_joint 1.317671e-02

Joint ci ratio: 2.797809e-02	ci left: 1.299383e-02	ci right 1.336320e-02	k: 19371	n:1470000
Cons ci ratio: 1.001973e-01	ci left: 9.880096e-04	ci right 1.092884e-03	k: 1528	n:1470000
KS ci ratio: 3.549662e-03	ci left: 4.526338e-01	ci right 4.542440e-01	k: 666555	n:1470000
PBLD   1470000 perm   1247 sec   (1179 perm/sec)   p_kst 4.534388e-01   p_cons 1.039456e-03   p_joint 1.317755e-02

Joint ci ratio: 2.735168e-02	ci left: 1.350126e-02	ci right 1.387632e-02	k: 20258	n:1480000
Cons ci ratio: 9.993632e-02	ci left: 9.866040e-04	ci right 1.091040e-03	k: 1536	n:1480000
KS ci ratio: 3.537478e-03	ci left: 4.526605e-01	ci right 4.542653e-01	k: 671125	n:1480000
PBLD   1480000 perm   1262 sec   (1173 perm/sec)   p_kst 4.534628e-01   p_cons 1.037838e-03   p_joint 1.368784e-02

Outputting figure to mutsig2_images.part000000000126/PBLD.4_992_1480000_0.45346_0.0010378_0.013688.png
                gene_name: PBLD
               theta_stop: 0.100 
                    nperm: 1480000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.0010 
      ci_cons_bounds_left: 0.00099 
     ci_cons_bounds_right: 0.0011 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.014 

Current progress: 61 percent done.
PBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
PBX1   10000 perm   2 sec   (5573 perm/sec)   p_kst 1.668000e-01   p_cons 3.562000e-01   p_joint 1.875000e-01

Outputting figure to mutsig2_images.part000000000126/PBX1.4_1329_10000_0.1668_0.3562_0.1875.png
                gene_name: PBX1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 62 percent done.
PCBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
Cons ci ratio: 1.136577e-01	ci left: 1.002268e-01	ci right 1.124036e-01	k: 1062	n:10000
KS ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
PCBP4   10000 perm   2 sec   (5936 perm/sec)   p_kst 4.463000e-01   p_cons 1.062000e-01   p_joint 1.700000e-01

Joint ci ratio: 6.037111e-02	ci left: 1.688180e-01	ci right 1.793770e-01	k: 3481	n:20000
Cons ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
KS ci ratio: 3.092463e-02	ci left: 4.385452e-01	ci right 4.523707e-01	k: 8909	n:20000
PCBP4   20000 perm   4 sec   (5153 perm/sec)   p_kst 4.454500e-01   p_cons 1.033000e-01   p_joint 1.740500e-01

Outputting figure to mutsig2_images.part000000000126/PCBP4.4_1260_20000_0.44545_0.1033_0.17405.png
                gene_name: PCBP4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
PCDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
Cons ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
KS ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
PCDH12   10000 perm   2 sec   (4903 perm/sec)   p_kst 1.164000e-01   p_cons 1.537000e-01   p_joint 1.861000e-01

Joint ci ratio: 8.064581e-02	ci left: 1.013733e-01	ci right 1.099417e-01	k: 2112	n:20000
Cons ci ratio: 6.682306e-02	ci left: 1.418725e-01	ci right 1.517304e-01	k: 2935	n:20000
KS ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
PCDH12   20000 perm   5 sec   (4334 perm/sec)   p_kst 1.179000e-01   p_cons 1.467500e-01   p_joint 1.056000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH12.4_3571_20000_0.1179_0.14675_0.1056.png
                gene_name: PCDH12
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 65 percent done.
PAPSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
Cons ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
KS ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
PAPSS1   10000 perm   2 sec   (5790 perm/sec)   p_kst 4.400000e-02   p_cons 5.222000e-01   p_joint 7.880000e-02

Joint ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
Cons ci ratio: 2.656001e-02	ci left: 5.143491e-01	ci right 5.282447e-01	k: 10426	n:20000
KS ci ratio: 1.265168e-01	ci left: 4.289548e-02	ci right 4.873749e-02	k: 915	n:20000
PAPSS1   20000 perm   4 sec   (4960 perm/sec)   p_kst 4.575000e-02   p_cons 5.213000e-01   p_joint 6.200000e-02

Joint ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
Cons ci ratio: 2.165917e-02	ci left: 5.162623e-01	ci right 5.276001e-01	k: 15658	n:30000
KS ci ratio: 1.041784e-01	ci left: 4.271417e-02	ci right 4.744110e-02	k: 1351	n:30000
PAPSS1   30000 perm   6 sec   (4660 perm/sec)   p_kst 4.503333e-02   p_cons 5.219333e-01   p_joint 5.653333e-02

Joint ci ratio: 7.716854e-02	ci left: 5.825672e-02	ci right 6.295731e-02	k: 2423	n:40000
Cons ci ratio: 1.880402e-02	ci left: 5.157904e-01	ci right 5.256066e-01	k: 20828	n:40000
KS ci ratio: 8.966727e-02	ci left: 4.355169e-02	ci right 4.766461e-02	k: 1823	n:40000
PAPSS1   40000 perm   9 sec   (4493 perm/sec)   p_kst 4.557500e-02   p_cons 5.207000e-01   p_joint 6.057500e-02

Outputting figure to mutsig2_images.part000000000126/PAPSS1.3_1923_40000_0.045575_0.5207_0.060575.png
                gene_name: PAPSS1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 67 percent done.
PAQR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
Cons ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
KS ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
PAQR3   10000 perm   2 sec   (6195 perm/sec)   p_kst 2.838000e-01   p_cons 5.010000e-02   p_joint 1.058000e-01

Joint ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
Cons ci ratio: 1.218494e-01	ci left: 4.619466e-02	ci right 5.223726e-02	k: 983	n:20000
KS ci ratio: 4.434388e-02	ci left: 2.746784e-01	ci right 2.871853e-01	k: 5618	n:20000
PAQR3   20000 perm   4 sec   (5339 perm/sec)   p_kst 2.809000e-01   p_cons 4.915000e-02   p_joint 1.059500e-01

Joint ci ratio: 6.392985e-02	ci left: 1.077951e-01	ci right 1.149470e-01	k: 3340	n:30000
Cons ci ratio: 9.945493e-02	ci left: 4.677963e-02	ci right 5.170813e-02	k: 1476	n:30000
KS ci ratio: 3.626503e-02	ci left: 2.751892e-01	ci right 2.853867e-01	k: 8408	n:30000
PAQR3   30000 perm   6 sec   (5022 perm/sec)   p_kst 2.802667e-01   p_cons 4.920000e-02   p_joint 1.113333e-01

Outputting figure to mutsig2_images.part000000000126/PAQR3.3_960_30000_0.28027_0.0492_0.11133.png
                gene_name: PAQR3
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 68 percent done.
PAQR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
PAQR8   10000 perm   1 sec   (7084 perm/sec)   p_kst 3.607000e-01   p_cons 1.120000e-01   p_joint 2.930000e-01

Joint ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
Cons ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
KS ci ratio: 3.687017e-02	ci left: 3.543890e-01	ci right 3.677514e-01	k: 7221	n:20000
PAQR8   20000 perm   3 sec   (5911 perm/sec)   p_kst 3.610500e-01   p_cons 1.166500e-01   p_joint 1.317500e-01

Outputting figure to mutsig2_images.part000000000126/PAQR8.3_1069_20000_0.36105_0.11665_0.13175.png
                gene_name: PAQR8
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 70 percent done.
PARD6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
PARD6B   10000 perm   2 sec   (6237 perm/sec)   p_kst 1.132000e-01   p_cons 9.851000e-01   p_joint 1.692000e-01

Joint ci ratio: 6.517918e-02	ci left: 1.481353e-01	ci right 1.581658e-01	k: 3062	n:20000
Cons ci ratio: 3.500278e-03	ci left: 9.825327e-01	ci right 9.860245e-01	k: 19687	n:20000
KS ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
PARD6B   20000 perm   4 sec   (5353 perm/sec)   p_kst 1.070000e-01   p_cons 9.843500e-01   p_joint 1.531000e-01

Outputting figure to mutsig2_images.part000000000126/PARD6B.3_1131_20000_0.107_0.98435_0.1531.png
                gene_name: PARD6B
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
PARP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
Cons ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
KS ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
PARP15   10000 perm   2 sec   (5616 perm/sec)   p_kst 2.190000e-01   p_cons 5.450000e-02   p_joint 1.068000e-01

Joint ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 5.260585e-02	ci left: 2.115513e-01	ci right 2.230310e-01	k: 4345	n:20000
PARP15   20000 perm   4 sec   (4851 perm/sec)   p_kst 2.172500e-01   p_cons 5.605000e-02   p_joint 4.600000e-02

Joint ci ratio: 1.018342e-01	ci left: 4.466495e-02	ci right 4.948992e-02	k: 1411	n:30000
Cons ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
KS ci ratio: 4.293162e-02	ci left: 2.127764e-01	ci right 2.221450e-01	k: 6523	n:30000
PARP15   30000 perm   7 sec   (4532 perm/sec)   p_kst 2.174333e-01   p_cons 5.646667e-02   p_joint 4.703333e-02

Joint ci ratio: 5.723799e-02	ci left: 1.019380e-01	ci right 1.079695e-01	k: 4197	n:40000
Cons ci ratio: 8.031989e-02	ci left: 5.393828e-02	ci right 5.847642e-02	k: 2247	n:40000
KS ci ratio: 3.708100e-02	ci left: 2.143095e-01	ci right 2.224314e-01	k: 8734	n:40000
PARP15   40000 perm   9 sec   (4386 perm/sec)   p_kst 2.183500e-01   p_cons 5.617500e-02   p_joint 1.049250e-01

Outputting figure to mutsig2_images.part000000000126/PARP15.3_2154_40000_0.21835_0.056175_0.10493.png
                gene_name: PARP15
               theta_stop: 0.080 
                    nperm: 40000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 72 percent done.
PARP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
Cons ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
KS ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
PARP6   10000 perm   2 sec   (5890 perm/sec)   p_kst 7.138000e-01   p_cons 7.943000e-01   p_joint 8.796000e-01

Outputting figure to mutsig2_images.part000000000126/PARP6.3_1981_10000_0.7138_0.7943_0.8796.png
                gene_name: PARP6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 74 percent done.
PATE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
Cons ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
KS ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
PATE1   10000 perm   1 sec   (7094 perm/sec)   p_kst 9.629000e-01   p_cons 5.888000e-01   p_joint 7.779000e-01

Outputting figure to mutsig2_images.part000000000126/PATE1.3_401_10000_0.9629_0.5888_0.7779.png
                gene_name: PATE1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 75 percent done.
PAX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
Cons ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
KS ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
PAX7   10000 perm   2 sec   (5937 perm/sec)   p_kst 6.693000e-01   p_cons 2.531000e-01   p_joint 5.847000e-01

Outputting figure to mutsig2_images.part000000000126/PAX7.3_1715_10000_0.6693_0.2531_0.5847.png
                gene_name: PAX7
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 77 percent done.
PAXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
Cons ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
KS ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
PAXIP1   10000 perm   2 sec   (5017 perm/sec)   p_kst 2.932000e-01   p_cons 3.587000e-01   p_joint 4.552000e-01

Outputting figure to mutsig2_images.part000000000126/PAXIP1.3_3294_10000_0.2932_0.3587_0.4552.png
                gene_name: PAXIP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 78 percent done.
PBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
PBX3   10000 perm   2 sec   (5742 perm/sec)   p_kst 1.962000e-01   p_cons 2.990000e-01   p_joint 2.920000e-01

Outputting figure to mutsig2_images.part000000000126/PBX3.3_1341_10000_0.1962_0.299_0.292.png
                gene_name: PBX3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 80 percent done.
PCBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
Cons ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
KS ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
PCBP3   10000 perm   2 sec   (6231 perm/sec)   p_kst 3.765000e-01   p_cons 3.419000e-01   p_joint 4.063000e-01

Outputting figure to mutsig2_images.part000000000126/PCBP3.3_1172_10000_0.3765_0.3419_0.4063.png
                gene_name: PCBP3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 81 percent done.
PAQR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
Cons ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
PAQR9   10000 perm   1 sec   (6702 perm/sec)   p_kst 1.653000e-01   p_cons 2.832000e-01   p_joint 5.675000e-01

Outputting figure to mutsig2_images.part000000000126/PAQR9.2_1138_10000_0.1653_0.2832_0.5675.png
                gene_name: PAQR9
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
PARL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
PARL   10000 perm   2 sec   (6611 perm/sec)   p_kst 2.414000e-01   p_cons 1.590000e-02   p_joint 1.621000e-01

Joint ci ratio: 7.286956e-02	ci left: 1.217750e-01	ci right 1.310339e-01	k: 2527	n:20000
Cons ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
KS ci ratio: 4.925088e-02	ci left: 2.345899e-01	ci right 2.464856e-01	k: 4810	n:20000
PARL   20000 perm   4 sec   (5536 perm/sec)   p_kst 2.405000e-01   p_cons 1.545000e-02   p_joint 1.263500e-01

Joint ci ratio: 5.207592e-02	ci left: 1.547137e-01	ci right 1.630192e-01	k: 4765	n:30000
Cons ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
KS ci ratio: 4.045878e-02	ci left: 2.334878e-01	ci right 2.431629e-01	k: 7149	n:30000
PARL   30000 perm   6 sec   (5239 perm/sec)   p_kst 2.383000e-01   p_cons 1.503333e-02   p_joint 1.588333e-01

Joint ci ratio: 4.525025e-02	ci left: 1.543885e-01	ci right 1.615612e-01	k: 6318	n:40000
Cons ci ratio: 1.611604e-01	ci left: 1.339939e-02	ci right 1.577185e-02	k: 582	n:40000
KS ci ratio: 3.499822e-02	ci left: 2.345539e-01	ci right 2.429341e-01	k: 9549	n:40000
PARL   40000 perm   8 sec   (5019 perm/sec)   p_kst 2.387250e-01   p_cons 1.455000e-02   p_joint 1.579500e-01

Joint ci ratio: 4.060062e-02	ci left: 1.539402e-01	ci right 1.603397e-01	k: 7856	n:50000
Cons ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
KS ci ratio: 3.141836e-02	ci left: 2.336758e-01	ci right 2.411547e-01	k: 11870	n:50000
PARL   50000 perm   10 sec   (4864 perm/sec)   p_kst 2.374000e-01   p_cons 1.432000e-02   p_joint 1.571200e-01

Joint ci ratio: 3.705477e-02	ci left: 1.542793e-01	ci right 1.601206e-01	k: 9431	n:60000
Cons ci ratio: 1.310939e-01	ci left: 1.371996e-02	ci right 1.566073e-02	k: 880	n:60000
KS ci ratio: 2.870100e-02	ci left: 2.337511e-01	ci right 2.405743e-01	k: 14229	n:60000
PARL   60000 perm   13 sec   (4733 perm/sec)   p_kst 2.371500e-01   p_cons 1.466667e-02   p_joint 1.571833e-01

Joint ci ratio: 3.430793e-02	ci left: 1.544823e-01	ci right 1.598890e-01	k: 11002	n:70000
Cons ci ratio: 1.208830e-01	ci left: 1.390463e-02	ci right 1.570735e-02	k: 1035	n:70000
KS ci ratio: 2.652346e-02	ci left: 2.346642e-01	ci right 2.409862e-01	k: 16647	n:70000
PARL   70000 perm   15 sec   (4615 perm/sec)   p_kst 2.378143e-01   p_cons 1.478571e-02   p_joint 1.571714e-01

Joint ci ratio: 3.218003e-02	ci left: 1.539389e-01	ci right 1.589861e-01	k: 12516	n:80000
Cons ci ratio: 1.132702e-01	ci left: 1.391387e-02	ci right 1.559659e-02	k: 1179	n:80000
KS ci ratio: 2.485696e-02	ci left: 2.341935e-01	ci right 2.401006e-01	k: 18971	n:80000
PARL   80000 perm   18 sec   (4508 perm/sec)   p_kst 2.371375e-01   p_cons 1.473750e-02   p_joint 1.564500e-01

Joint ci ratio: 3.028563e-02	ci left: 1.545514e-01	ci right 1.593151e-01	k: 14123	n:90000
Cons ci ratio: 1.066090e-01	ci left: 1.401040e-02	ci right 1.559888e-02	k: 1331	n:90000
KS ci ratio: 2.338475e-02	ci left: 2.351432e-01	ci right 2.407181e-01	k: 21413	n:90000
PARL   90000 perm   20 sec   (4408 perm/sec)   p_kst 2.379222e-01   p_cons 1.478889e-02   p_joint 1.569222e-01

Joint ci ratio: 2.867227e-02	ci left: 1.552174e-01	ci right 1.597425e-01	k: 15747	n:100000
Cons ci ratio: 1.010343e-01	ci left: 1.408019e-02	ci right 1.558815e-02	k: 1482	n:100000
KS ci ratio: 2.215195e-02	ci left: 2.358214e-01	ci right 2.411138e-01	k: 23846	n:100000
PARL   100000 perm   23 sec   (4320 perm/sec)   p_kst 2.384600e-01   p_cons 1.482000e-02   p_joint 1.574700e-01

Joint ci ratio: 2.733870e-02	ci left: 1.553157e-01	ci right 1.596297e-01	k: 17321	n:110000
Cons ci ratio: 9.574734e-02	ci left: 1.428995e-02	ci right 1.573579e-02	k: 1650	n:110000
KS ci ratio: 2.109872e-02	ci left: 2.363281e-01	ci right 2.413766e-01	k: 26273	n:110000
PARL   110000 perm   26 sec   (4236 perm/sec)   p_kst 2.388455e-01   p_cons 1.500000e-02   p_joint 1.574636e-01

Outputting figure to mutsig2_images.part000000000126/PARL.2_1180_110000_0.23885_0.015_0.15746.png
                gene_name: PARL
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 84 percent done.
PARM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
Cons ci ratio: 8.507071e-03	ci left: 9.508566e-01	ci right 9.590757e-01	k: 9551	n:10000
KS ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
PARM1   10000 perm   1 sec   (7222 perm/sec)   p_kst 3.240000e-01   p_cons 9.551000e-01   p_joint 5.800000e-01

Outputting figure to mutsig2_images.part000000000126/PARM1.2_949_10000_0.324_0.9551_0.58.png
                gene_name: PARM1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 86 percent done.
PARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
Cons ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
KS ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
PARP1   10000 perm   2 sec   (5454 perm/sec)   p_kst 6.995000e-01   p_cons 3.369000e-01   p_joint 6.047000e-01

Outputting figure to mutsig2_images.part000000000126/PARP1.2_3137_10000_0.6995_0.3369_0.6047.png
                gene_name: PARP1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 87 percent done.
PARP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
KS ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
PARP10   10000 perm   2 sec   (5476 perm/sec)   p_kst 1.999000e-01   p_cons 7.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PARP10.2_3122_10000_0.1999_0.7168_1.png
                gene_name: PARP10
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
Cons ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
KS ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
PARP2   10000 perm   2 sec   (6477 perm/sec)   p_kst 7.990000e-02   p_cons 5.898000e-01   p_joint 5.519000e-01

Joint ci ratio: 1.023684e-02	ci left: 8.754160e-01	ci right 8.844732e-01	k: 17600	n:20000
Cons ci ratio: 2.308864e-02	ci left: 5.834968e-01	ci right 5.971769e-01	k: 11807	n:20000
KS ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
PARP2   20000 perm   4 sec   (5502 perm/sec)   p_kst 8.100000e-02   p_cons 5.903500e-01   p_joint 8.800000e-01

Outputting figure to mutsig2_images.part000000000126/PARP2.2_1816_20000_0.081_0.59035_0.88.png
                gene_name: PARP2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.88 

Current progress: 90 percent done.
PARVA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.351839e-02	ci left: 5.678475e-01	ci right 5.873073e-01	k: 5776	n:10000
Cons ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
KS ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
PARVA   10000 perm   2 sec   (6607 perm/sec)   p_kst 5.669000e-01   p_cons 7.243000e-01   p_joint 5.776000e-01

Outputting figure to mutsig2_images.part000000000126/PARVA.2_1171_10000_0.5669_0.7243_0.5776.png
                gene_name: PARVA
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 91 percent done.
PARVG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
KS ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
PARVG   10000 perm   1 sec   (7081 perm/sec)   p_kst 3.123000e-01   p_cons 5.677000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PARVG.2_1044_10000_0.3123_0.5677_1.png
                gene_name: PARVG
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
KS ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
PATL1   10000 perm   2 sec   (5845 perm/sec)   p_kst 5.537000e-01   p_cons 4.401000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PATL1.2_2389_10000_0.5537_0.4401_1.png
                gene_name: PATL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
PAWR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
PAWR   10000 perm   1 sec   (6785 perm/sec)   p_kst 6.276000e-01   p_cons 3.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAWR.2_1047_10000_0.6276_0.3928_1.png
                gene_name: PAWR
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PBX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
Cons ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
KS ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
PBX4   10000 perm   1 sec   (6718 perm/sec)   p_kst 2.221000e-01   p_cons 1.703000e-01   p_joint 2.987000e-01

Outputting figure to mutsig2_images.part000000000126/PBX4.2_1157_10000_0.2221_0.1703_0.2987.png
                gene_name: PBX4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 97 percent done.
PCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
Cons ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
KS ci ratio: 4.023461e-02	ci left: 4.770586e-01	ci right 4.967491e-01	k: 4869	n:10000
PCBP1   10000 perm   1 sec   (6674 perm/sec)   p_kst 4.869000e-01   p_cons 9.717000e-01   p_joint 8.755000e-01

Outputting figure to mutsig2_images.part000000000126/PCBP1.2_1075_10000_0.4869_0.9717_0.8755.png
                gene_name: PCBP1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 99 percent done.
PCCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
KS ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
PCCB   10000 perm   2 sec   (6325 perm/sec)   p_kst 7.160000e-01   p_cons 8.212000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCCB.2_1744_10000_0.716_0.8212_1.png
                gene_name: PCCB
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000126
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 126 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 4422292: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000127> was used as the working directory.
Started at Wed Oct 24 18:02:21 2012
Results reported at Wed Oct 24 18:37:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000127.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000127.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 127  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000127.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2213.35 sec.
    Max Memory :      5408 MB
    Max Swap   :      7730 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
127
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 127
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 127: processing genes 11400 - 11490
Calculating significance of each gene.
Using projection method.
11400	PCDHA3	9.970891e-01
11401	PCDHA4	4.554504e-01
11402	PCDHA5	6.214787e-01
11403	PCDHA6	1
11404	PCDHA7	1
11405	PCDHA8	9.237796e-01
11406	PCDHA9	6.638436e-01
11407	PCDHAC1	9.921031e-01
11408	PCDHAC2	9.968004e-01
11409	PCDHB1	7.660317e-01
11410	PCDHB10	1.586000e-01
In gene PCDHB11 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 2251    n = 1	mu =   6.02e-07
11411	PCDHB11	9.611712e-01
11412	PCDHB12	1
11413	PCDHB13	3.511538e-01
11414	PCDHB14	1
11415	PCDHB15	9.878229e-01
11416	PCDHB16	9.775561e-01
11417	PCDHB2	2.124736e-01
11418	PCDHB3	5.281400e-01
11419	PCDHB4	9.897372e-01
11420	PCDHB5	3.286708e-01
11421	PCDHB6	9.906160e-01
11422	PCDHB7	9.791873e-01
11423	PCDHB8	1
11424	PCDHB9	5.685015e-01
11425	PCDHGA1	7.017446e-02
11426	PCDHGA10	8.454097e-01
11427	PCDHGA11	9.064591e-01
11428	PCDHGA12	9.650983e-01
11429	PCDHGA2	1.467809e-02
In gene PCDHGA3 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 2879    n = 1	mu =   7.03e-07
11430	PCDHGA3	7.622720e-03
11431	PCDHGA4	9.466825e-01
11432	PCDHGA5	7.947098e-02
11433	PCDHGA6	5.917967e-01
11434	PCDHGA7	9.158156e-01
11435	PCDHGA8	5.547455e-02
11436	PCDHGA9	1
11437	PCDHGB1	2.658710e-01
11438	PCDHGB2	9.369796e-01
11439	PCDHGB3	9.888722e-01
11440	PCDHGB4	9.962096e-01
11441	PCDHGB5	9.892349e-01
11442	PCDHGB6	1
11443	PCDHGB7	7.049786e-01
In gene PCDHGC3 the following bins exceed PROBCAP:
    LUAD-17-Z004-TP	categ 6	N = 2858    n = 1	mu =   2.01e-07
11444	PCDHGC3	8.892560e-01
11445	PCDHGC4	9.083740e-01
11446	PCDHGC5	1
11447	PCDP1	2.924830e-01
11448	PCF11	9.452290e-01
11449	PCGF1	8.132183e-01
11450	PCGF2	4.287722e-01
11451	PCGF3	1
11452	PCGF5	2.379363e-01
11453	PCGF6	4.015587e-01
11454	PCID2	1
11455	PCIF1	9.701536e-01
11456	PCK1	5.678285e-03
11457	PCK2	7.429158e-01
11458	PCLO	1
11459	PCM1	1
11460	PCMT1	7.803223e-01
11461	PCMTD1	1.855799e-01
11462	PCMTD2	1
11463	PCNA	6.322377e-01
11464	PCNP	2.534023e-01
11465	PCNT	9.999858e-01
11466	PCNX	9.845769e-01
11467	PCNXL2	9.999456e-01
11468	PCNXL3	9.963164e-01
11469	PCOLCE	4.624105e-02
11470	PCOLCE2	5.197046e-01
11471	PCOTH	1
11472	PCP2	1
11473	PCP4	2.833933e-01
11474	PCP4L1	1
11475	PCSK1	8.434211e-01
11476	PCSK2	7.835994e-01
11477	PCSK4	6.248076e-01
11478	PCSK5	9.605974e-01
11479	PCSK6	4.476879e-01
11480	PCSK7	7.160964e-01
11481	PCSK9	1
11482	PCTP	1
11483	PCYOX1	9.669972e-01
11484	PCYOX1L	1
11485	PCYT1A	7.238621e-01
11486	PCYT1B	3.385777e-01
11487	PCYT2	1
11488	PDAP1	4.823806e-01
In gene PDC the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 753     n = 1	mu =   5.35e-07
11489	PDC	4.346972e-01
11490	PDCD1	6.715175e-01
Done

Running MutSig 2:
Scatter job 127: processing genes 11400 - 11490
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCLO
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
Cons ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
KS ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
PCLO   10000 perm   5 sec   (2045 perm/sec)   p_kst 1.967000e-01   p_cons 1.710000e-02   p_joint 2.590000e-02

Joint ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
Cons ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
KS ci ratio: 5.629992e-02	ci left: 1.895781e-01	ci right 2.006107e-01	k: 3901	n:20000
PCLO   20000 perm   12 sec   (1608 perm/sec)   p_kst 1.950500e-01   p_cons 1.950000e-02   p_joint 1.730000e-02

Joint ci ratio: 1.389777e-01	ci left: 2.403537e-02	ci right 2.765724e-02	k: 774	n:30000
Cons ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
KS ci ratio: 4.700929e-02	ci left: 1.837246e-01	ci right 1.926026e-01	k: 5644	n:30000
PCLO   30000 perm   18 sec   (1672 perm/sec)   p_kst 1.881333e-01   p_cons 1.930000e-02   p_joint 2.580000e-02

Joint ci ratio: 1.007360e-01	ci left: 3.463466e-02	ci right 3.833302e-02	k: 1458	n:40000
Cons ci ratio: 1.386195e-01	ci left: 1.823985e-02	ci right 2.098052e-02	k: 783	n:40000
KS ci ratio: 4.083724e-02	ci left: 1.833877e-01	ci right 1.910578e-01	k: 7488	n:40000
PCLO   40000 perm   24 sec   (1697 perm/sec)   p_kst 1.872000e-01   p_cons 1.957500e-02   p_joint 3.645000e-02

Joint ci ratio: 1.077666e-01	ci left: 2.438901e-02	ci right 2.718641e-02	k: 1288	n:50000
Cons ci ratio: 1.258314e-01	ci left: 1.784070e-02	ci right 2.025560e-02	k: 951	n:50000
KS ci ratio: 3.654100e-02	ci left: 1.836700e-01	ci right 1.905264e-01	k: 9354	n:50000
PCLO   50000 perm   29 sec   (1709 perm/sec)   p_kst 1.870800e-01   p_cons 1.902000e-02   p_joint 2.576000e-02

Joint ci ratio: 1.041471e-01	ci left: 2.186405e-02	ci right 2.428238e-02	k: 1383	n:60000
Cons ci ratio: 1.159803e-01	ci left: 1.759870e-02	ci right 1.978154e-02	k: 1120	n:60000
KS ci ratio: 3.348942e-02	ci left: 1.827776e-01	ci right 1.890195e-01	k: 11153	n:60000
PCLO   60000 perm   35 sec   (1716 perm/sec)   p_kst 1.858833e-01   p_cons 1.866667e-02   p_joint 2.305000e-02

Joint ci ratio: 9.601654e-02	ci left: 2.213932e-02	ci right 2.438615e-02	k: 1627	n:70000
Cons ci ratio: 1.075798e-01	ci left: 1.761198e-02	ci right 1.962821e-02	k: 1302	n:70000
KS ci ratio: 3.107268e-02	ci left: 1.823567e-01	ci right 1.881266e-01	k: 12966	n:70000
PCLO   70000 perm   41 sec   (1718 perm/sec)   p_kst 1.852286e-01   p_cons 1.860000e-02   p_joint 2.324286e-02

Joint ci ratio: 9.083446e-02	ci left: 2.171563e-02	ci right 2.379418e-02	k: 1819	n:80000
Cons ci ratio: 1.011921e-01	ci left: 1.747997e-02	ci right 1.935519e-02	k: 1472	n:80000
KS ci ratio: 2.901111e-02	ci left: 1.831100e-01	ci right 1.885128e-01	k: 14864	n:80000
PCLO   80000 perm   47 sec   (1714 perm/sec)   p_kst 1.858000e-01   p_cons 1.840000e-02   p_joint 2.273750e-02

Joint ci ratio: 9.034580e-02	ci left: 1.956242e-02	ci right 2.142423e-02	k: 1843	n:90000
Cons ci ratio: 9.561451e-02	ci left: 1.745602e-02	ci right 1.921966e-02	k: 1649	n:90000
KS ci ratio: 2.728296e-02	ci left: 1.840261e-01	ci right 1.891274e-01	k: 16791	n:90000
PCLO   90000 perm   53 sec   (1709 perm/sec)   p_kst 1.865667e-01   p_cons 1.832222e-02   p_joint 2.047778e-02

Outputting figure to mutsig2_images.part000000000127/PCLO.74_15546_90000_0.18657_0.018322_0.020478.png
                gene_name: PCLO
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 1 percent done.
PCDHB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
Cons ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
KS ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
PCDHB7   10000 perm   2 sec   (4614 perm/sec)   p_kst 6.259000e-01   p_cons 2.601000e-01   p_joint 5.621000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB7.20_2386_10000_0.6259_0.2601_0.5621.png
                gene_name: PCDHB7
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 3 percent done.
PCDHGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.182305e-02	ci left: 7.549442e-01	ci right 7.717021e-01	k: 7634	n:10000
Cons ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
KS ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
PCDHGA3   10000 perm   2 sec   (4588 perm/sec)   p_kst 4.702000e-01   p_cons 4.811000e-01   p_joint 7.634000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA3.20_2879_10000_0.4702_0.4811_0.7634.png
                gene_name: PCDHGA3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 4 percent done.
PCDHGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
Cons ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
KS ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
PCDHGA8   10000 perm   2 sec   (4586 perm/sec)   p_kst 9.160000e-02   p_cons 5.071000e-01   p_joint 3.189000e-01

Joint ci ratio: 6.486688e-02	ci left: 1.493685e-01	ci right 1.594322e-01	k: 3087	n:20000
Cons ci ratio: 2.623721e-02	ci left: 5.204523e-01	ci right 5.343397e-01	k: 10548	n:20000
KS ci ratio: 8.835364e-02	ci left: 8.562761e-02	ci right 9.359217e-02	k: 1791	n:20000
PCDHGA8   20000 perm   5 sec   (4157 perm/sec)   p_kst 8.955000e-02   p_cons 5.274000e-01   p_joint 1.543500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA8.19_2854_20000_0.08955_0.5274_0.15435.png
                gene_name: PCDHGA8
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 6 percent done.
PCDHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
Cons ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
PCDHB4   10000 perm   2 sec   (4913 perm/sec)   p_kst 4.914000e-01   p_cons 2.692000e-01   p_joint 3.971000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB4.18_2392_10000_0.4914_0.2692_0.3971.png
                gene_name: PCDHB4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 7 percent done.
PCDHGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
Cons ci ratio: 5.627086e-03	ci left: 9.769554e-01	ci right 9.825602e-01	k: 9799	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
PCDHGA2   10000 perm   2 sec   (4570 perm/sec)   p_kst 1.790000e-02   p_cons 9.799000e-01   p_joint 4.360000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 4.242917e-03	ci left: 9.749834e-01	ci right 9.791763e-01	k: 19543	n:20000
KS ci ratio: 2.149918e-01	ci left: 1.459066e-02	ci right 1.815195e-02	k: 326	n:20000
PCDHGA2   20000 perm   5 sec   (4191 perm/sec)   p_kst 1.630000e-02   p_cons 9.771500e-01   p_joint 3.900000e-02

Joint ci ratio: 1.134068e-01	ci left: 3.612399e-02	ci right 4.049934e-02	k: 1148	n:30000
Cons ci ratio: 3.415123e-03	ci left: 9.760346e-01	ci right 9.794054e-01	k: 29333	n:30000
KS ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
PCDHGA2   30000 perm   7 sec   (4044 perm/sec)   p_kst 1.686667e-02   p_cons 9.777667e-01   p_joint 3.826667e-02

Joint ci ratio: 8.422143e-02	ci left: 4.920721e-02	ci right 5.355821e-02	k: 2054	n:40000
Cons ci ratio: 2.934353e-03	ci left: 9.766180e-01	ci right 9.795120e-01	k: 39124	n:40000
KS ci ratio: 1.479373e-01	ci left: 1.597260e-02	ci right 1.854817e-02	k: 689	n:40000
PCDHGA2   40000 perm   10 sec   (3930 perm/sec)   p_kst 1.722500e-02   p_cons 9.781000e-01   p_joint 5.135000e-02

Joint ci ratio: 8.530615e-02	ci left: 3.878884e-02	ci right 4.226476e-02	k: 2025	n:50000
Cons ci ratio: 2.635288e-03	ci left: 9.765939e-01	ci right 9.791902e-01	k: 48896	n:50000
KS ci ratio: 1.397137e-01	ci left: 1.441612e-02	ci right 1.660066e-02	k: 774	n:50000
PCDHGA2   50000 perm   13 sec   (3850 perm/sec)   p_kst 1.548000e-02   p_cons 9.779200e-01   p_joint 4.050000e-02

Joint ci ratio: 7.638280e-02	ci left: 4.044156e-02	ci right 4.366959e-02	k: 2522	n:60000
Cons ci ratio: 2.403842e-03	ci left: 9.767433e-01	ci right 9.791102e-01	k: 58677	n:60000
KS ci ratio: 1.263726e-01	ci left: 1.478505e-02	ci right 1.679552e-02	k: 946	n:60000
PCDHGA2   60000 perm   16 sec   (3772 perm/sec)   p_kst 1.576667e-02   p_cons 9.779500e-01   p_joint 4.203333e-02

Joint ci ratio: 7.349076e-02	ci left: 3.761995e-02	ci right 4.050414e-02	k: 2733	n:70000
Cons ci ratio: 2.206557e-03	ci left: 9.772081e-01	ci right 9.793806e-01	k: 68482	n:70000
KS ci ratio: 1.174221e-01	ci left: 1.475046e-02	ci right 1.660429e-02	k: 1096	n:70000
PCDHGA2   70000 perm   19 sec   (3700 perm/sec)   p_kst 1.565714e-02   p_cons 9.783143e-01   p_joint 3.904286e-02

Joint ci ratio: 7.384523e-02	ci left: 3.276712e-02	ci right 3.529182e-02	k: 2721	n:80000
Cons ci ratio: 1.940331e-03	ci left: 9.798124e-01	ci right 9.817275e-01	k: 78463	n:80000
KS ci ratio: 1.092956e-01	ci left: 1.495939e-02	ci right 1.670098e-02	k: 1265	n:80000
PCDHGA2   80000 perm   22 sec   (3632 perm/sec)   p_kst 1.581250e-02   p_cons 9.807875e-01   p_joint 3.401250e-02

Joint ci ratio: 6.447142e-02	ci left: 3.818206e-02	ci right 4.073662e-02	k: 3550	n:90000
Cons ci ratio: 1.826536e-03	ci left: 9.799277e-01	ci right 9.817300e-01	k: 88276	n:90000
KS ci ratio: 1.023985e-01	ci left: 1.520115e-02	ci right 1.685248e-02	k: 1441	n:90000
PCDHGA2   90000 perm   25 sec   (3572 perm/sec)   p_kst 1.601111e-02   p_cons 9.808444e-01   p_joint 3.944444e-02

Joint ci ratio: 6.031308e-02	ci left: 3.930626e-02	ci right 4.176048e-02	k: 4052	n:100000
Cons ci ratio: 1.730196e-03	ci left: 9.800326e-01	ci right 9.817394e-01	k: 98090	n:100000
KS ci ratio: 9.767872e-02	ci left: 1.507521e-02	ci right 1.663305e-02	k: 1584	n:100000
PCDHGA2   100000 perm   28 sec   (3517 perm/sec)   p_kst 1.584000e-02   p_cons 9.809000e-01   p_joint 4.052000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGA2.18_2861_100000_0.01584_0.9809_0.04052.png
                gene_name: PCDHGA2
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 8 percent done.
PCDHB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
Cons ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
KS ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
PCDHB12   10000 perm   2 sec   (4949 perm/sec)   p_kst 2.504000e-01   p_cons 1.517000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB12.17_2392_10000_0.2504_0.1517_0.225.png
                gene_name: PCDHB12
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
PCDHGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
Cons ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
KS ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
PCDHGA1   10000 perm   2 sec   (4774 perm/sec)   p_kst 3.024000e-01   p_cons 4.827000e-01   p_joint 4.915000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA1.16_2862_10000_0.3024_0.4827_0.4915.png
                gene_name: PCDHGA1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 11 percent done.
PCDHB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PCDHB11   10000 perm   2 sec   (4722 perm/sec)   p_kst 1   p_cons 8.845000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB11.15_2398_10000_1_0.8845_1.png
                gene_name: PCDHB11
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
PCDHB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
KS ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
PCDHB8   10000 perm   2 sec   (4946 perm/sec)   p_kst 7.800000e-03   p_cons 6.539000e-01   p_joint 1.450000e-02

Joint ci ratio: 1.835317e-01	ci left: 2.025053e-02	ci right 2.438996e-02	k: 445	n:20000
Cons ci ratio: 2.019843e-02	ci left: 6.465067e-01	ci right 6.597488e-01	k: 13063	n:20000
KS ci ratio: 2.976019e-01	ci left: 7.320842e-03	ci right 9.925044e-03	k: 171	n:20000
PCDHB8   20000 perm   4 sec   (4506 perm/sec)   p_kst 8.550000e-03   p_cons 6.531500e-01   p_joint 2.225000e-02

Joint ci ratio: 1.334255e-01	ci left: 2.609784e-02	ci right 2.986098e-02	k: 838	n:30000
Cons ci ratio: 1.655349e-02	ci left: 6.460435e-01	ci right 6.568605e-01	k: 19544	n:30000
KS ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
PCDHB8   30000 perm   7 sec   (4315 perm/sec)   p_kst 8.600000e-03   p_cons 6.514667e-01   p_joint 2.793333e-02

Joint ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
Cons ci ratio: 1.520198e-02	ci left: 6.196077e-01	ci right 6.291242e-01	k: 24975	n:40000
KS ci ratio: 2.139160e-01	ci left: 7.434246e-03	ci right 9.238224e-03	k: 332	n:40000
PCDHB8   40000 perm   10 sec   (4187 perm/sec)   p_kst 8.300000e-03   p_cons 6.243750e-01   p_joint 2.650000e-02

Joint ci ratio: 1.310497e-01	ci left: 1.642680e-02	ci right 1.874969e-02	k: 878	n:50000
Cons ci ratio: 1.303962e-02	ci left: 6.395843e-01	ci right 6.479990e-01	k: 32190	n:50000
KS ci ratio: 1.930352e-01	ci left: 7.390110e-03	ci right 8.987781e-03	k: 408	n:50000
PCDHB8   50000 perm   12 sec   (4092 perm/sec)   p_kst 8.160000e-03   p_cons 6.438000e-01   p_joint 1.756000e-02

Joint ci ratio: 1.148373e-01	ci left: 1.795497e-02	ci right 2.015857e-02	k: 1142	n:60000
Cons ci ratio: 1.190439e-02	ci left: 6.399196e-01	ci right 6.475998e-01	k: 38626	n:60000
KS ci ratio: 1.761803e-01	ci left: 7.462067e-03	ci right 8.919440e-03	k: 490	n:60000
PCDHB8   60000 perm   15 sec   (4010 perm/sec)   p_kst 8.166667e-03   p_cons 6.437667e-01   p_joint 1.903333e-02

Joint ci ratio: 1.041692e-01	ci left: 1.879470e-02	ci right 2.087395e-02	k: 1387	n:70000
Cons ci ratio: 1.102261e-02	ci left: 6.401536e-01	ci right 6.472631e-01	k: 45060	n:70000
KS ci ratio: 1.629443e-01	ci left: 7.531534e-03	ci right 8.881138e-03	k: 573	n:70000
PCDHB8   70000 perm   18 sec   (3940 perm/sec)   p_kst 8.185714e-03   p_cons 6.437143e-01   p_joint 1.981429e-02

Joint ci ratio: 9.872821e-02	ci left: 1.837006e-02	ci right 2.029002e-02	k: 1545	n:80000
Cons ci ratio: 1.030626e-02	ci left: 6.405829e-01	ci right 6.472316e-01	k: 51513	n:80000
KS ci ratio: 1.538457e-01	ci left: 7.430398e-03	ci right 8.680673e-03	k: 643	n:80000
PCDHB8   80000 perm   21 sec   (3872 perm/sec)   p_kst 8.037500e-03   p_cons 6.439125e-01   p_joint 1.931250e-02

Joint ci ratio: 9.543790e-02	ci left: 1.752112e-02	ci right 1.928789e-02	k: 1655	n:90000
Cons ci ratio: 9.723238e-03	ci left: 6.404720e-01	ci right 6.467410e-01	k: 57925	n:90000
KS ci ratio: 1.446953e-01	ci left: 7.503315e-03	ci right 8.684276e-03	k: 727	n:90000
PCDHB8   90000 perm   24 sec   (3811 perm/sec)   p_kst 8.077778e-03   p_cons 6.436111e-01   p_joint 1.838889e-02

Joint ci ratio: 8.979746e-02	ci left: 1.785961e-02	ci right 1.954847e-02	k: 1869	n:100000
Cons ci ratio: 9.231745e-03	ci left: 6.402618e-01	ci right 6.462099e-01	k: 64324	n:100000
KS ci ratio: 1.398094e-01	ci left: 7.254412e-03	ci right 8.354425e-03	k: 779	n:100000
PCDHB8   100000 perm   27 sec   (3749 perm/sec)   p_kst 7.790000e-03   p_cons 6.432400e-01   p_joint 1.869000e-02

Joint ci ratio: 8.242901e-02	ci left: 1.931440e-02	ci right 2.098376e-02	k: 2215	n:110000
Cons ci ratio: 8.922681e-03	ci left: 6.341229e-01	ci right 6.398154e-01	k: 70067	n:110000
KS ci ratio: 1.336173e-01	ci left: 7.244642e-03	ci right 8.290653e-03	k: 853	n:110000
PCDHB8   110000 perm   30 sec   (3687 perm/sec)   p_kst 7.754545e-03   p_cons 6.369727e-01   p_joint 2.013636e-02

Joint ci ratio: 8.560190e-02	ci left: 1.643926e-02	ci right 1.791753e-02	k: 2060	n:120000
Cons ci ratio: 8.546629e-03	ci left: 6.340381e-01	ci right 6.394886e-01	k: 76412	n:120000
KS ci ratio: 1.281117e-01	ci left: 7.245465e-03	ci right 8.245211e-03	k: 928	n:120000
PCDHB8   120000 perm   33 sec   (3632 perm/sec)   p_kst 7.733333e-03   p_cons 6.367667e-01   p_joint 1.716667e-02

Joint ci ratio: 7.337242e-02	ci left: 2.069572e-02	ci right 2.227957e-02	k: 2792	n:130000
Cons ci ratio: 8.197373e-03	ci left: 6.349339e-01	ci right 6.401677e-01	k: 82882	n:130000
KS ci ratio: 1.231115e-01	ci left: 7.261824e-03	ci right 8.221867e-03	k: 1005	n:130000
PCDHB8   130000 perm   36 sec   (3576 perm/sec)   p_kst 7.730769e-03   p_cons 6.375538e-01   p_joint 2.147692e-02

Joint ci ratio: 7.211067e-02	ci left: 1.992548e-02	ci right 2.142304e-02	k: 2893	n:140000
Cons ci ratio: 7.890102e-03	ci left: 6.355621e-01	ci right 6.406037e-01	k: 89332	n:140000
KS ci ratio: 1.193786e-01	ci left: 7.186385e-03	ci right 8.105612e-03	k: 1069	n:140000
PCDHB8   140000 perm   40 sec   (3529 perm/sec)   p_kst 7.635714e-03   p_cons 6.380857e-01   p_joint 2.066429e-02

Joint ci ratio: 7.070539e-02	ci left: 1.936953e-02	ci right 2.079577e-02	k: 3011	n:150000
Cons ci ratio: 7.620240e-03	ci left: 6.357890e-01	ci right 6.406590e-01	k: 95734	n:150000
KS ci ratio: 1.160174e-01	ci left: 7.114912e-03	ci right 7.997616e-03	k: 1132	n:150000
PCDHB8   150000 perm   43 sec   (3481 perm/sec)   p_kst 7.546667e-03   p_cons 6.382267e-01   p_joint 2.007333e-02

Joint ci ratio: 6.726081e-02	ci left: 2.008784e-02	ci right 2.149210e-02	k: 3325	n:160000
Cons ci ratio: 7.383888e-03	ci left: 6.355144e-01	ci right 6.402306e-01	k: 102060	n:160000
KS ci ratio: 1.130202e-01	ci left: 7.040544e-03	ci right 7.889950e-03	k: 1193	n:160000
PCDHB8   160000 perm   47 sec   (3437 perm/sec)   p_kst 7.456250e-03   p_cons 6.378750e-01   p_joint 2.078125e-02

Joint ci ratio: 6.704625e-02	ci left: 1.905045e-02	ci right 2.037777e-02	k: 3350	n:170000
Cons ci ratio: 7.164862e-03	ci left: 6.354923e-01	ci right 6.400677e-01	k: 108423	n:170000
KS ci ratio: 1.098914e-01	ci left: 7.020958e-03	ci right 7.843033e-03	k: 1262	n:170000
PCDHB8   170000 perm   50 sec   (3392 perm/sec)   p_kst 7.423529e-03   p_cons 6.377824e-01   p_joint 1.970588e-02

Joint ci ratio: 6.897440e-02	ci left: 1.701939e-02	ci right 1.824066e-02	k: 3172	n:180000
Cons ci ratio: 6.968676e-03	ci left: 6.351797e-01	ci right 6.396270e-01	k: 114733	n:180000
KS ci ratio: 1.065265e-01	ci left: 7.068736e-03	ci right 7.869472e-03	k: 1343	n:180000
PCDHB8   180000 perm   54 sec   (3349 perm/sec)   p_kst 7.461111e-03   p_cons 6.374056e-01   p_joint 1.762222e-02

Joint ci ratio: 6.523970e-02	ci left: 1.803865e-02	ci right 1.926031e-02	k: 3542	n:190000
Cons ci ratio: 6.787297e-03	ci left: 6.349332e-01	ci right 6.392626e-01	k: 121049	n:190000
KS ci ratio: 1.037467e-01	ci left: 7.070805e-03	ci right 7.849599e-03	k: 1416	n:190000
PCDHB8   190000 perm   57 sec   (3306 perm/sec)   p_kst 7.452632e-03   p_cons 6.371000e-01   p_joint 1.864211e-02

Joint ci ratio: 6.677338e-02	ci left: 1.637403e-02	ci right 1.751003e-02	k: 3387	n:200000
Cons ci ratio: 6.615512e-03	ci left: 6.349832e-01	ci right 6.392028e-01	k: 127419	n:200000
KS ci ratio: 1.011055e-01	ci left: 7.082661e-03	ci right 7.841720e-03	k: 1491	n:200000
PCDHB8   200000 perm   61 sec   (3264 perm/sec)   p_kst 7.455000e-03   p_cons 6.370950e-01   p_joint 1.693500e-02

Joint ci ratio: 6.674073e-02	ci left: 1.562221e-02	ci right 1.670549e-02	k: 3393	n:210000
Cons ci ratio: 6.455745e-03	ci left: 6.350583e-01	ci right 6.391760e-01	k: 133795	n:210000
KS ci ratio: 9.815253e-02	ci left: 7.167943e-03	ci right 7.912414e-03	k: 1582	n:210000
PCDHB8   210000 perm   65 sec   (3225 perm/sec)   p_kst 7.533333e-03   p_cons 6.371190e-01   p_joint 1.615714e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB8.15_2408_210000_0.0075333_0.63712_0.016157.png
                gene_name: PCDHB8
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.0075 
        ci_ks_bounds_left: 0.0072 
       ci_ks_bounds_right: 0.0079 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 14 percent done.
PCDHGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
Cons ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
KS ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
PCDHGA5   10000 perm   2 sec   (4481 perm/sec)   p_kst 1.115000e-01   p_cons 3.978000e-01   p_joint 1.844000e-01

Joint ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
Cons ci ratio: 3.462256e-02	ci left: 3.837799e-01	ci right 3.973520e-01	k: 7811	n:20000
KS ci ratio: 8.157699e-02	ci left: 9.926215e-02	ci right 1.077535e-01	k: 2069	n:20000
PCDHGA5   20000 perm   5 sec   (4098 perm/sec)   p_kst 1.034500e-01   p_cons 3.905500e-01   p_joint 1.891500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA5.15_2831_20000_0.10345_0.39055_0.18915.png
                gene_name: PCDHGA5
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 15 percent done.
PCDHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 3.218655e-03	ci left: 9.916107e-01	ci right 9.948920e-01	k: 9934	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
PCDHA3   10000 perm   2 sec   (4845 perm/sec)   p_kst 4.510000e-02   p_cons 9.934000e-01   p_joint 1.329000e-01

Joint ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
Cons ci ratio: 2.180187e-03	ci left: 9.927209e-01	ci right 9.949318e-01	k: 19878	n:20000
KS ci ratio: 1.272464e-01	ci left: 4.241066e-02	ci right 4.822246e-02	k: 905	n:20000
PCDHA3   20000 perm   5 sec   (4401 perm/sec)   p_kst 4.525000e-02   p_cons 9.939000e-01   p_joint 1.028500e-01

Joint ci ratio: 6.982547e-02	ci left: 9.173749e-02	ci right 9.840783e-02	k: 2851	n:30000
Cons ci ratio: 1.816240e-03	ci left: 9.926671e-01	ci right 9.945020e-01	k: 29809	n:30000
KS ci ratio: 1.041784e-01	ci left: 4.271417e-02	ci right 4.744110e-02	k: 1351	n:30000
PCDHA3   30000 perm   7 sec   (4234 perm/sec)   p_kst 4.503333e-02   p_cons 9.936333e-01   p_joint 9.503333e-02

Joint ci ratio: 6.451378e-02	ci left: 8.176741e-02	ci right 8.724308e-02	k: 3379	n:40000
Cons ci ratio: 1.585264e-03	ci left: 9.926896e-01	ci right 9.942875e-01	k: 39741	n:40000
KS ci ratio: 8.989991e-02	ci left: 4.333151e-02	ci right 4.743481e-02	k: 1814	n:40000
PCDHA3   40000 perm   10 sec   (4132 perm/sec)   p_kst 4.535000e-02   p_cons 9.935250e-01   p_joint 8.447500e-02

Outputting figure to mutsig2_images.part000000000127/PCDHA3.14_2948_40000_0.04535_0.99352_0.084475.png
                gene_name: PCDHA3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 17 percent done.
PCDHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
Cons ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
PCDHA6   10000 perm   2 sec   (5142 perm/sec)   p_kst 9.820000e-02   p_cons 9.413000e-01   p_joint 2.072000e-01

Joint ci ratio: 5.217660e-02	ci left: 2.143245e-01	ci right 2.258570e-01	k: 4401	n:20000
Cons ci ratio: 6.924156e-03	ci left: 9.379526e-01	ci right 9.445184e-01	k: 18826	n:20000
KS ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
PCDHA6   20000 perm   4 sec   (4650 perm/sec)   p_kst 1.065500e-01   p_cons 9.413000e-01   p_joint 2.200500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA6.14_2885_20000_0.10655_0.9413_0.22005.png
                gene_name: PCDHA6
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
PCDHB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
KS ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
PCDHB10   10000 perm   2 sec   (5110 perm/sec)   p_kst 6.087000e-01   p_cons 4.748000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB10.14_2407_10000_0.6087_0.4748_0.8406.png
                gene_name: PCDHB10
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 20 percent done.
PCDHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
KS ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
PCDHA7   10000 perm   2 sec   (4987 perm/sec)   p_kst 7.900000e-03   p_cons 3.645000e-01   p_joint 1.360000e-02

Joint ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
Cons ci ratio: 3.613073e-02	ci left: 3.637514e-01	ci right 3.771863e-01	k: 7409	n:20000
KS ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
PCDHA7   20000 perm   4 sec   (4519 perm/sec)   p_kst 7.450000e-03   p_cons 3.704500e-01   p_joint 2.400000e-02

Joint ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
Cons ci ratio: 2.948161e-02	ci left: 3.652971e-01	ci right 3.762613e-01	k: 11123	n:30000
KS ci ratio: 2.541604e-01	ci left: 6.866967e-03	ci right 8.896746e-03	k: 235	n:30000
PCDHA7   30000 perm   7 sec   (4213 perm/sec)   p_kst 7.833333e-03   p_cons 3.707667e-01   p_joint 3.150000e-02

Joint ci ratio: 1.161750e-01	ci left: 2.606501e-02	ci right 2.930405e-02	k: 1106	n:40000
Cons ci ratio: 2.543497e-02	ci left: 3.678088e-01	ci right 3.773097e-01	k: 14902	n:40000
KS ci ratio: 2.203457e-01	ci left: 6.984896e-03	ci right 8.737684e-03	k: 313	n:40000
PCDHA7   40000 perm   10 sec   (4118 perm/sec)   p_kst 7.825000e-03   p_cons 3.725500e-01   p_joint 2.765000e-02

Joint ci ratio: 1.163980e-01	ci left: 2.088752e-02	ci right 2.348836e-02	k: 1108	n:50000
Cons ci ratio: 2.270283e-02	ci left: 3.692774e-01	ci right 3.777773e-01	k: 18676	n:50000
KS ci ratio: 1.962039e-01	ci left: 7.142690e-03	ci right 8.715247e-03	k: 395	n:50000
PCDHA7   50000 perm   12 sec   (4042 perm/sec)   p_kst 7.900000e-03   p_cons 3.735200e-01   p_joint 2.216000e-02

Joint ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
Cons ci ratio: 2.079089e-02	ci left: 3.681638e-01	ci right 3.759153e-01	k: 22322	n:60000
KS ci ratio: 1.799122e-01	ci left: 7.143483e-03	ci right 8.571405e-03	k: 470	n:60000
PCDHA7   60000 perm   15 sec   (3982 perm/sec)   p_kst 7.833333e-03   p_cons 3.720333e-01   p_joint 1.888333e-02

Joint ci ratio: 1.128090e-01	ci left: 1.599972e-02	ci right 1.792633e-02	k: 1186	n:70000
Cons ci ratio: 1.874522e-02	ci left: 3.808939e-01	ci right 3.881157e-01	k: 26915	n:70000
KS ci ratio: 1.663379e-01	ci left: 7.216403e-03	ci right 8.539165e-03	k: 550	n:70000
PCDHA7   70000 perm   18 sec   (3922 perm/sec)   p_kst 7.857143e-03   p_cons 3.845000e-01   p_joint 1.694286e-02

Joint ci ratio: 1.035818e-01	ci left: 1.667573e-02	ci right 1.850949e-02	k: 1406	n:80000
Cons ci ratio: 1.758891e-02	ci left: 3.796669e-01	ci right 3.864166e-01	k: 30643	n:80000
KS ci ratio: 1.561853e-01	ci left: 7.202045e-03	ci right 8.434050e-03	k: 624	n:80000
PCDHA7   80000 perm   21 sec   (3868 perm/sec)   p_kst 7.800000e-03   p_cons 3.830375e-01   p_joint 1.757500e-02

Joint ci ratio: 1.030909e-01	ci left: 1.499538e-02	ci right 1.663604e-02	k: 1422	n:90000
Cons ci ratio: 1.680641e-02	ci left: 3.735660e-01	ci right 3.799086e-01	k: 33906	n:90000
KS ci ratio: 1.467412e-01	ci left: 7.289136e-03	ci right 8.454030e-03	k: 707	n:90000
PCDHA7   90000 perm   24 sec   (3812 perm/sec)   p_kst 7.855556e-03   p_cons 3.767333e-01   p_joint 1.580000e-02

Joint ci ratio: 1.004515e-01	ci left: 1.424596e-02	ci right 1.576236e-02	k: 1499	n:100000
Cons ci ratio: 1.595872e-02	ci left: 3.732960e-01	ci right 3.793112e-01	k: 37630	n:100000
KS ci ratio: 1.405376e-01	ci left: 7.177198e-03	ci right 8.271645e-03	k: 771	n:100000
PCDHA7   100000 perm   27 sec   (3759 perm/sec)   p_kst 7.710000e-03   p_cons 3.763000e-01   p_joint 1.499000e-02

Joint ci ratio: 9.841384e-02	ci left: 1.351797e-02	ci right 1.492599e-02	k: 1563	n:110000
Cons ci ratio: 1.523790e-02	ci left: 3.727642e-01	ci right 3.784970e-01	k: 41319	n:110000
KS ci ratio: 1.336173e-01	ci left: 7.244642e-03	ci right 8.290653e-03	k: 853	n:110000
PCDHA7   110000 perm   30 sec   (3703 perm/sec)   p_kst 7.754545e-03   p_cons 3.756273e-01   p_joint 1.420909e-02

Joint ci ratio: 8.893089e-02	ci left: 1.522426e-02	ci right 1.664927e-02	k: 1911	n:120000
Cons ci ratio: 1.520228e-02	ci left: 3.538143e-01	ci right 3.592426e-01	k: 42783	n:120000
KS ci ratio: 1.275593e-01	ci left: 7.310015e-03	ci right 8.313991e-03	k: 936	n:120000
PCDHA7   120000 perm   33 sec   (3652 perm/sec)   p_kst 7.800000e-03   p_cons 3.565250e-01   p_joint 1.592500e-02

Joint ci ratio: 9.134226e-02	ci left: 1.333074e-02	ci right 1.461415e-02	k: 1815	n:130000
Cons ci ratio: 1.462581e-02	ci left: 3.532967e-01	ci right 3.585097e-01	k: 46267	n:130000
KS ci ratio: 1.231115e-01	ci left: 7.261824e-03	ci right 8.221867e-03	k: 1005	n:130000
PCDHA7   130000 perm   36 sec   (3602 perm/sec)   p_kst 7.730769e-03   p_cons 3.559000e-01   p_joint 1.396154e-02

Joint ci ratio: 9.237262e-02	ci left: 1.211300e-02	ci right 1.329302e-02	k: 1777	n:140000
Cons ci ratio: 1.409336e-02	ci left: 3.534057e-01	ci right 3.584288e-01	k: 49828	n:140000
KS ci ratio: 1.182698e-01	ci left: 7.325026e-03	ci right 8.252677e-03	k: 1089	n:140000
PCDHA7   140000 perm   39 sec   (3553 perm/sec)   p_kst 7.778571e-03   p_cons 3.559143e-01   p_joint 1.269286e-02

Joint ci ratio: 9.122535e-02	ci left: 1.160495e-02	ci right 1.272069e-02	k: 1823	n:150000
Cons ci ratio: 1.362206e-02	ci left: 3.532702e-01	ci right 3.581221e-01	k: 53354	n:150000
KS ci ratio: 1.143018e-01	ci left: 7.335097e-03	ci right 8.230754e-03	k: 1166	n:150000
PCDHA7   150000 perm   43 sec   (3505 perm/sec)   p_kst 7.773333e-03   p_cons 3.556933e-01   p_joint 1.215333e-02

Joint ci ratio: 8.416934e-02	ci left: 1.281171e-02	ci right 1.394352e-02	k: 2139	n:160000
Cons ci ratio: 1.319220e-02	ci left: 3.532539e-01	ci right 3.579513e-01	k: 56896	n:160000
KS ci ratio: 1.111140e-01	ci left: 7.289663e-03	ci right 8.153319e-03	k: 1234	n:160000
PCDHA7   160000 perm   46 sec   (3459 perm/sec)   p_kst 7.712500e-03   p_cons 3.556000e-01   p_joint 1.336875e-02

Joint ci ratio: 7.587332e-02	ci left: 1.487194e-02	ci right 1.605055e-02	k: 2627	n:170000
Cons ci ratio: 1.279208e-02	ci left: 3.535472e-01	ci right 3.581048e-01	k: 60490	n:170000
KS ci ratio: 1.076389e-01	ci left: 7.324302e-03	ci right 8.163204e-03	k: 1315	n:170000
PCDHA7   170000 perm   50 sec   (3415 perm/sec)   p_kst 7.735294e-03   p_cons 3.558235e-01   p_joint 1.545294e-02

Joint ci ratio: 7.480201e-02	ci left: 1.446532e-02	ci right 1.559482e-02	k: 2704	n:180000
Cons ci ratio: 1.242855e-02	ci left: 3.537266e-01	ci right 3.581559e-01	k: 64069	n:180000
KS ci ratio: 1.045085e-01	ci left: 7.350056e-03	ci right 8.165918e-03	k: 1395	n:180000
PCDHA7   180000 perm   53 sec   (3370 perm/sec)   p_kst 7.750000e-03   p_cons 3.559389e-01   p_joint 1.502222e-02

Joint ci ratio: 7.353296e-02	ci left: 1.419464e-02	ci right 1.528339e-02	k: 2799	n:190000
Cons ci ratio: 1.209254e-02	ci left: 3.539570e-01	ci right 3.582685e-01	k: 67661	n:190000
KS ci ratio: 1.016362e-01	ci left: 7.373414e-03	ci right 8.168031e-03	k: 1475	n:190000
PCDHA7   190000 perm   57 sec   (3327 perm/sec)   p_kst 7.763158e-03   p_cons 3.561105e-01   p_joint 1.473158e-02

Joint ci ratio: 6.839299e-02	ci left: 1.560700e-02	ci right 1.671709e-02	k: 3231	n:200000
Cons ci ratio: 1.178457e-02	ci left: 3.540809e-01	ci right 3.582833e-01	k: 71236	n:200000
KS ci ratio: 9.866933e-02	ci left: 7.443485e-03	ci right 8.220882e-03	k: 1565	n:200000
PCDHA7   200000 perm   61 sec   (3284 perm/sec)   p_kst 7.825000e-03   p_cons 3.561800e-01   p_joint 1.615500e-02

Outputting figure to mutsig2_images.part000000000127/PCDHA7.13_2843_200000_0.007825_0.35618_0.016155.png
                gene_name: PCDHA7
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.0078 
        ci_ks_bounds_left: 0.0074 
       ci_ks_bounds_right: 0.0082 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 21 percent done.
PCDHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
Cons ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
PCDHB6   10000 perm   2 sec   (4698 perm/sec)   p_kst 5.006000e-01   p_cons 2.553000e-01   p_joint 5.010000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB6.13_2389_10000_0.5006_0.2553_0.501.png
                gene_name: PCDHB6
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 23 percent done.
PCDHGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
Cons ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
KS ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
PCDHGA4   10000 perm   2 sec   (4765 perm/sec)   p_kst 3.037000e-01   p_cons 9.095000e-01   p_joint 4.349000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA4.13_2854_10000_0.3037_0.9095_0.4349.png
                gene_name: PCDHGA4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 24 percent done.
PCDHGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
PCDHGA6   10000 perm   2 sec   (4910 perm/sec)   p_kst 2.621000e-01   p_cons 9.788000e-01   p_joint 4.296000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA6.13_2846_10000_0.2621_0.9788_0.4296.png
                gene_name: PCDHGA6
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 25 percent done.
PCNT
Processing conservation and coverage...
98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
Cons ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
PCNT   10000 perm   3 sec   (3217 perm/sec)   p_kst 4.237000e-01   p_cons 2.779000e-01   p_joint 4.016000e-01

Outputting figure to mutsig2_images.part000000000127/PCNT.13_10199_10000_0.4237_0.2779_0.4016.png
                gene_name: PCNT
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 27 percent done.
PCNX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KS ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
PCNX   10000 perm   3 sec   (3668 perm/sec)   p_kst 4.732000e-01   p_cons 1.141000e-01   p_joint 2.288000e-01

Joint ci ratio: 4.256860e-02	ci left: 2.913678e-01	ci right 3.040911e-01	k: 5954	n:20000
Cons ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
KS ci ratio: 2.926159e-02	ci left: 4.659600e-01	ci right 4.798479e-01	k: 9458	n:20000
PCNX   20000 perm   6 sec   (3395 perm/sec)   p_kst 4.729000e-01   p_cons 1.056500e-01   p_joint 2.977000e-01

Outputting figure to mutsig2_images.part000000000127/PCNX.13_7170_20000_0.4729_0.10565_0.2977.png
                gene_name: PCNX
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 28 percent done.
PCNXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
Cons ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
KS ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
PCNXL2   10000 perm   3 sec   (3786 perm/sec)   p_kst 8.710000e-02   p_cons 7.750000e-02   p_joint 9.230000e-02

Joint ci ratio: 1.139107e-01	ci left: 5.270727e-02	ci right 5.912260e-02	k: 1117	n:20000
Cons ci ratio: 9.586490e-02	ci left: 7.343977e-02	ci right 8.088372e-02	k: 1542	n:20000
KS ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
PCNXL2   20000 perm   6 sec   (3505 perm/sec)   p_kst 8.525000e-02   p_cons 7.710000e-02   p_joint 5.585000e-02

Joint ci ratio: 8.076819e-02	ci left: 6.985214e-02	ci right 7.576424e-02	k: 2183	n:30000
Cons ci ratio: 7.810036e-02	ci left: 7.443321e-02	ci right 8.051558e-02	k: 2323	n:30000
KS ci ratio: 7.414297e-02	ci left: 8.206446e-02	ci right 8.841614e-02	k: 2556	n:30000
PCNXL2   30000 perm   9 sec   (3397 perm/sec)   p_kst 8.520000e-02   p_cons 7.743333e-02   p_joint 7.276667e-02

Outputting figure to mutsig2_images.part000000000127/PCNXL2.13_6550_30000_0.0852_0.077433_0.072767.png
                gene_name: PCNXL2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 30 percent done.
PCDHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
PCDHA4   10000 perm   2 sec   (4860 perm/sec)   p_kst 3.790000e-02   p_cons 8.907000e-01   p_joint 1.879000e-01

Joint ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
Cons ci ratio: 9.317670e-03	ci left: 8.942316e-01	ci right 9.026521e-01	k: 17970	n:20000
KS ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
PCDHA4   20000 perm   5 sec   (4432 perm/sec)   p_kst 3.745000e-02   p_cons 8.985000e-01   p_joint 8.875000e-02

Joint ci ratio: 6.889504e-02	ci left: 9.403444e-02	ci right 1.007771e-01	k: 2921	n:30000
Cons ci ratio: 7.633863e-03	ci left: 8.943847e-01	ci right 9.012714e-01	k: 26936	n:30000
KS ci ratio: 1.150301e-01	ci left: 3.511911e-02	ci right 3.943776e-02	k: 1117	n:30000
PCDHA4   30000 perm   7 sec   (4243 perm/sec)   p_kst 3.723333e-02   p_cons 8.978667e-01   p_joint 9.736667e-02

Joint ci ratio: 5.766090e-02	ci left: 1.005806e-01	ci right 1.065771e-01	k: 4142	n:40000
Cons ci ratio: 7.067483e-03	ci left: 8.817826e-01	ci right 8.880614e-01	k: 35398	n:40000
KS ci ratio: 9.875102e-02	ci left: 3.602539e-02	ci right 3.979208e-02	k: 1515	n:40000
PCDHA4   40000 perm   10 sec   (4134 perm/sec)   p_kst 3.787500e-02   p_cons 8.849500e-01   p_joint 1.035500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA4.12_2870_40000_0.037875_0.88495_0.10355.png
                gene_name: PCDHA4
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
PCDHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
Cons ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
PCDHB2   10000 perm   2 sec   (5053 perm/sec)   p_kst 4.559000e-01   p_cons 9.120000e-01   p_joint 6.554000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB2.12_2401_10000_0.4559_0.912_0.6554.png
                gene_name: PCDHB2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 32 percent done.
PCDHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
KS ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
PCDHB3   10000 perm   2 sec   (5077 perm/sec)   p_kst 4.240000e-02   p_cons 9.091000e-01   p_joint 9.860000e-02

Joint ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
Cons ci ratio: 8.539207e-03	ci left: 9.093658e-01	ci right 9.172136e-01	k: 18267	n:20000
KS ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
PCDHB3   20000 perm   4 sec   (4580 perm/sec)   p_kst 4.540000e-02   p_cons 9.133500e-01   p_joint 1.170500e-01

Joint ci ratio: 6.855762e-02	ci left: 9.488775e-02	ci right 1.016569e-01	k: 2947	n:30000
Cons ci ratio: 7.080593e-03	ci left: 9.075858e-01	ci right 9.140677e-01	k: 27326	n:30000
KS ci ratio: 1.032226e-01	ci left: 4.349433e-02	ci right 4.826078e-02	k: 1375	n:30000
PCDHB3   30000 perm   7 sec   (4385 perm/sec)   p_kst 4.583333e-02   p_cons 9.108667e-01   p_joint 9.823333e-02

Joint ci ratio: 5.018916e-02	ci left: 1.289939e-01	ci right 1.356595e-01	k: 5292	n:40000
Cons ci ratio: 5.837067e-03	ci left: 9.158265e-01	ci right 9.212125e-01	k: 36742	n:40000
KS ci ratio: 8.961580e-02	ci left: 4.360061e-02	ci right 4.771567e-02	k: 1825	n:40000
PCDHB3   40000 perm   9 sec   (4255 perm/sec)   p_kst 4.562500e-02   p_cons 9.185500e-01   p_joint 1.323000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB3.12_2395_40000_0.045625_0.91855_0.1323.png
                gene_name: PCDHB3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 34 percent done.
PCDHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
Cons ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
KS ci ratio: 2.437940e-01	ci left: 2.212298e-02	ci right 2.835777e-02	k: 251	n:10000
PCDHB5   10000 perm   2 sec   (4416 perm/sec)   p_kst 2.510000e-02   p_cons 1.048000e-01   p_joint 6.910000e-02

Joint ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
Cons ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
KS ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
PCDHB5   20000 perm   5 sec   (4266 perm/sec)   p_kst 2.325000e-02   p_cons 1.105000e-01   p_joint 4.365000e-02

Joint ci ratio: 1.320554e-01	ci left: 2.664618e-02	ci right 3.044585e-02	k: 855	n:30000
Cons ci ratio: 6.381170e-02	ci left: 1.081566e-01	ci right 1.153188e-01	k: 3351	n:30000
KS ci ratio: 1.458884e-01	ci left: 2.178327e-02	ci right 2.524319e-02	k: 704	n:30000
PCDHB5   30000 perm   7 sec   (4177 perm/sec)   p_kst 2.346667e-02   p_cons 1.117000e-01   p_joint 2.850000e-02

Joint ci ratio: 1.177151e-01	ci left: 2.538496e-02	ci right 2.858421e-02	k: 1078	n:40000
Cons ci ratio: 5.696547e-02	ci left: 1.028266e-01	ci right 1.088807e-01	k: 4233	n:40000
KS ci ratio: 1.265505e-01	ci left: 2.194073e-02	ci right 2.492900e-02	k: 936	n:40000
PCDHB5   40000 perm   10 sec   (4106 perm/sec)   p_kst 2.340000e-02   p_cons 1.058250e-01   p_joint 2.695000e-02

Joint ci ratio: 8.844715e-02	ci left: 3.612567e-02	ci right 3.948826e-02	k: 1889	n:50000
Cons ci ratio: 5.123623e-02	ci left: 1.021085e-01	ci right 1.074975e-01	k: 5239	n:50000
KS ci ratio: 1.109905e-01	ci left: 2.298747e-02	ci right 2.570814e-02	k: 1216	n:50000
PCDHB5   50000 perm   12 sec   (4038 perm/sec)   p_kst 2.432000e-02   p_cons 1.047800e-01   p_joint 3.778000e-02

Joint ci ratio: 7.065342e-02	ci left: 4.707321e-02	ci right 5.053726e-02	k: 2927	n:60000
Cons ci ratio: 4.478053e-02	ci left: 1.107082e-01	ci right 1.157959e-01	k: 6794	n:60000
KS ci ratio: 1.020168e-01	ci left: 2.279011e-02	ci right 2.525623e-02	k: 1440	n:60000
PCDHB5   60000 perm   15 sec   (3972 perm/sec)   p_kst 2.400000e-02   p_cons 1.132333e-01   p_joint 4.878333e-02

Joint ci ratio: 7.326794e-02	ci left: 3.784449e-02	ci right 4.073672e-02	k: 2749	n:70000
Cons ci ratio: 4.149861e-02	ci left: 1.107061e-01	ci right 1.154118e-01	k: 7913	n:70000
KS ci ratio: 9.396843e-02	ci left: 2.311610e-02	ci right 2.540928e-02	k: 1697	n:70000
PCDHB5   70000 perm   18 sec   (3909 perm/sec)   p_kst 2.424286e-02   p_cons 1.130429e-01   p_joint 3.927143e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB5.12_2392_70000_0.024243_0.11304_0.039271.png
                gene_name: PCDHB5
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 35 percent done.
PCDHGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
Cons ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
PCDHGB1   10000 perm   2 sec   (5072 perm/sec)   p_kst 6.250000e-02   p_cons 3.148000e-01   p_joint 1.330000e-01

Joint ci ratio: 8.661282e-02	ci left: 8.886219e-02	ci right 9.695661e-02	k: 1857	n:20000
Cons ci ratio: 4.177300e-02	ci left: 2.992690e-01	ci right 3.120875e-01	k: 6113	n:20000
KS ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
PCDHGB1   20000 perm   4 sec   (4599 perm/sec)   p_kst 6.250000e-02   p_cons 3.056500e-01   p_joint 9.285000e-02

Joint ci ratio: 6.970400e-02	ci left: 9.203278e-02	ci right 9.871248e-02	k: 2860	n:30000
Cons ci ratio: 3.419613e-02	ci left: 2.993613e-01	ci right 3.098099e-01	k: 9137	n:30000
KS ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
PCDHGB1   30000 perm   7 sec   (4407 perm/sec)   p_kst 6.630000e-02   p_cons 3.045667e-01   p_joint 9.533333e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB1.12_2822_30000_0.0663_0.30457_0.095333.png
                gene_name: PCDHGB1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 37 percent done.
PCSK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
Cons ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
KS ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
PCSK5   10000 perm   2 sec   (4735 perm/sec)   p_kst 4.039000e-01   p_cons 4.625000e-01   p_joint 5.153000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK5.12_2826_10000_0.4039_0.4625_0.5153.png
                gene_name: PCSK5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 38 percent done.
PCDHGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
Cons ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
KS ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
PCDHGB2   10000 perm   2 sec   (4592 perm/sec)   p_kst 2.857000e-01   p_cons 7.438000e-01   p_joint 3.690000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB2.11_2825_10000_0.2857_0.7438_0.369.png
                gene_name: PCDHGB2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 39 percent done.
PCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
PCK1   10000 perm   2 sec   (4975 perm/sec)   p_kst 1.100000e-03   p_cons 1.770000e-02   p_joint 5.500000e-03

Joint ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
Cons ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
PCK1   20000 perm   4 sec   (4538 perm/sec)   p_kst 1.300000e-03   p_cons 1.305000e-02   p_joint 4.900000e-03

Joint ci ratio: 4.520690e-01	ci left: 1.937345e-03	ci right 3.095698e-03	k: 74	n:30000
Cons ci ratio: 1.990167e-01	ci left: 1.149527e-02	ci right 1.406704e-02	k: 382	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
PCK1   30000 perm   7 sec   (4363 perm/sec)   p_kst 1.266667e-03   p_cons 1.273333e-02   p_joint 2.466667e-03

Joint ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
Cons ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
KS ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
PCK1   40000 perm   9 sec   (4239 perm/sec)   p_kst 1.225000e-03   p_cons 1.250000e-02   p_joint 2.000000e-03

Joint ci ratio: 4.584617e-01	ci left: 1.126877e-03	ci right 1.813103e-03	k: 72	n:50000
Cons ci ratio: 1.551880e-01	ci left: 1.162147e-02	ci right 1.359572e-02	k: 629	n:50000
KS ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
PCK1   50000 perm   12 sec   (4139 perm/sec)   p_kst 1.360000e-03   p_cons 1.258000e-02   p_joint 1.440000e-03

Joint ci ratio: 4.039969e-01	ci left: 1.251227e-03	ci right 1.898523e-03	k: 93	n:60000
Cons ci ratio: 1.412888e-01	ci left: 1.177106e-02	ci right 1.357653e-02	k: 759	n:60000
KS ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
PCK1   60000 perm   15 sec   (4046 perm/sec)   p_kst 1.500000e-03   p_cons 1.265000e-02   p_joint 1.550000e-03

Joint ci ratio: 4.274473e-01	ci left: 9.445220e-04	ci right 1.469662e-03	k: 83	n:70000
Cons ci ratio: 1.309328e-01	ci left: 1.181447e-02	ci right 1.348344e-02	k: 884	n:70000
KS ci ratio: 3.769084e-01	ci left: 1.252865e-03	ci right 1.846828e-03	k: 107	n:70000
PCK1   70000 perm   18 sec   (3966 perm/sec)   p_kst 1.528571e-03   p_cons 1.262857e-02   p_joint 1.185714e-03

Joint ci ratio: 4.465076e-01	ci left: 7.485627e-04	ci right 1.188925e-03	k: 76	n:80000
Cons ci ratio: 1.225642e-01	ci left: 1.185066e-02	ci right 1.340998e-02	k: 1009	n:80000
KS ci ratio: 3.636966e-01	ci left: 1.186945e-03	ci right 1.725253e-03	k: 115	n:80000
PCK1   80000 perm   21 sec   (3897 perm/sec)   p_kst 1.437500e-03   p_cons 1.261250e-02   p_joint 9.500000e-04

Joint ci ratio: 3.787333e-01	ci left: 9.643656e-04	ci right 1.424313e-03	k: 106	n:90000
Cons ci ratio: 1.161384e-01	ci left: 1.177354e-02	ci right 1.323591e-02	k: 1124	n:90000
KS ci ratio: 3.448874e-01	ci left: 1.186659e-03	ci right 1.690800e-03	k: 128	n:90000
PCK1   90000 perm   24 sec   (3828 perm/sec)   p_kst 1.422222e-03   p_cons 1.248889e-02   p_joint 1.177778e-03

Joint ci ratio: 3.653298e-01	ci left: 9.404486e-04	ci right 1.369331e-03	k: 114	n:100000
Cons ci ratio: 1.103576e-01	ci left: 1.177192e-02	ci right 1.315657e-02	k: 1245	n:100000
KS ci ratio: 3.334606e-01	ci left: 1.150326e-03	ci right 1.619362e-03	k: 137	n:100000
PCK1   100000 perm   27 sec   (3766 perm/sec)   p_kst 1.370000e-03   p_cons 1.245000e-02   p_joint 1.140000e-03

Joint ci ratio: 4.130333e-01	ci left: 6.498153e-04	ci right 9.955631e-04	k: 89	n:110000
Cons ci ratio: 1.053621e-01	ci left: 1.177208e-02	ci right 1.309018e-02	k: 1366	n:110000
KS ci ratio: 3.096763e-01	ci left: 1.229638e-03	ci right 1.688203e-03	k: 159	n:110000
PCK1   110000 perm   30 sec   (3706 perm/sec)   p_kst 1.445455e-03   p_cons 1.241818e-02   p_joint 8.090909e-04

Joint ci ratio: 4.495106e-01	ci left: 4.916329e-04	ci right 7.833808e-04	k: 75	n:120000
Cons ci ratio: 1.006810e-01	ci left: 1.184652e-02	ci right 1.311054e-02	k: 1496	n:120000
KS ci ratio: 2.952631e-01	ci left: 1.250390e-03	ci right 1.690934e-03	k: 175	n:120000
PCK1   120000 perm   33 sec   (3649 perm/sec)   p_kst 1.458333e-03   p_cons 1.246667e-02   p_joint 6.250000e-04

Joint ci ratio: 4.525103e-01	ci left: 4.469942e-04	ci right 7.145652e-04	k: 74	n:130000
Cons ci ratio: 9.630365e-02	ci left: 1.197819e-02	ci right 1.319754e-02	k: 1635	n:130000
KS ci ratio: 2.841777e-01	ci left: 1.254076e-03	ci right 1.676356e-03	k: 189	n:130000
PCK1   130000 perm   36 sec   (3596 perm/sec)   p_kst 1.453846e-03   p_cons 1.257692e-02   p_joint 5.692308e-04

Joint ci ratio: 4.354280e-01	ci left: 4.531325e-04	ci right 7.111426e-04	k: 80	n:140000
Cons ci ratio: 9.274315e-02	ci left: 1.201529e-02	ci right 1.319074e-02	k: 1763	n:140000
KS ci ratio: 2.742539e-01	ci left: 1.257500e-03	ci right 1.663598e-03	k: 203	n:140000
PCK1   140000 perm   40 sec   (3544 perm/sec)   p_kst 1.450000e-03   p_cons 1.259286e-02   p_joint 5.714286e-04

Joint ci ratio: 4.130789e-01	ci left: 4.765216e-04	ci right 7.300978e-04	k: 89	n:150000
Cons ci ratio: 8.986363e-02	ci left: 1.196341e-02	ci right 1.309554e-02	k: 1878	n:150000
KS ci ratio: 2.628975e-01	ci left: 1.285593e-03	ci right 1.680746e-03	k: 221	n:150000
PCK1   150000 perm   43 sec   (3492 perm/sec)   p_kst 1.473333e-03   p_cons 1.252000e-02   p_joint 5.933333e-04

Joint ci ratio: 4.063656e-01	ci left: 4.635555e-04	ci right 7.051405e-04	k: 92	n:160000
Cons ci ratio: 8.692815e-02	ci left: 1.200414e-02	ci right 1.310113e-02	k: 2007	n:160000
KS ci ratio: 2.571732e-01	ci left: 1.263668e-03	ci right 1.642267e-03	k: 231	n:160000
PCK1   160000 perm   46 sec   (3446 perm/sec)   p_kst 1.443750e-03   p_cons 1.254375e-02   p_joint 5.750000e-04

Joint ci ratio: 3.958645e-01	ci left: 4.627322e-04	ci right 6.960256e-04	k: 97	n:170000
Cons ci ratio: 8.452349e-02	ci left: 1.196573e-02	ci right 1.302746e-02	k: 2123	n:170000
KS ci ratio: 2.492416e-01	ci left: 1.271972e-03	ci right 1.639484e-03	k: 246	n:170000
PCK1   170000 perm   50 sec   (3400 perm/sec)   p_kst 1.447059e-03   p_cons 1.248824e-02   p_joint 5.705882e-04

Joint ci ratio: 3.824402e-01	ci left: 4.721100e-04	ci right 7.000317e-04	k: 104	n:180000
Cons ci ratio: 8.217800e-02	ci left: 1.197006e-02	ci right 1.300129e-02	k: 2246	n:180000
KS ci ratio: 2.401723e-01	ci left: 1.300395e-03	ci right 1.660412e-03	k: 265	n:180000
PCK1   180000 perm   54 sec   (3355 perm/sec)   p_kst 1.472222e-03   p_cons 1.247778e-02   p_joint 5.777778e-04

Joint ci ratio: 3.861434e-01	ci left: 4.377511e-04	ci right 6.516523e-04	k: 102	n:190000
Cons ci ratio: 8.027516e-02	ci left: 1.189691e-02	ci right 1.289700e-02	k: 2354	n:190000
KS ci ratio: 2.312149e-01	ci left: 1.335957e-03	ci right 1.690058e-03	k: 286	n:190000
PCK1   190000 perm   57 sec   (3311 perm/sec)   p_kst 1.505263e-03   p_cons 1.238947e-02   p_joint 5.368421e-04

Joint ci ratio: 4.042211e-01	ci left: 3.753309e-04	ci right 5.696266e-04	k: 93	n:200000
Cons ci ratio: 7.608008e-02	ci left: 1.260134e-02	ci right 1.360284e-02	k: 2619	n:200000
KS ci ratio: 2.253997e-01	ci left: 1.339871e-03	ci right 1.684836e-03	k: 301	n:200000
PCK1   200000 perm   61 sec   (3269 perm/sec)   p_kst 1.505000e-03   p_cons 1.309500e-02   p_joint 4.650000e-04

Joint ci ratio: 3.979228e-01	ci left: 3.703024e-04	ci right 5.582214e-04	k: 96	n:210000
Cons ci ratio: 7.400163e-02	ci left: 1.269751e-02	ci right 1.367790e-02	k: 2768	n:210000
KS ci ratio: 2.214058e-01	ci left: 1.325516e-03	ci right 1.659915e-03	k: 312	n:210000
PCK1   210000 perm   65 sec   (3227 perm/sec)   p_kst 1.485714e-03   p_cons 1.318095e-02   p_joint 4.571429e-04

Joint ci ratio: 4.042298e-01	ci left: 3.412086e-04	ci right 5.178448e-04	k: 93	n:220000
Cons ci ratio: 7.219761e-02	ci left: 1.274509e-02	ci right 1.370416e-02	k: 2908	n:220000
KS ci ratio: 2.169473e-01	ci left: 1.321113e-03	ci right 1.646794e-03	k: 325	n:220000
PCK1   220000 perm   69 sec   (3187 perm/sec)   p_kst 1.477273e-03   p_cons 1.321818e-02   p_joint 4.227273e-04

Joint ci ratio: 4.131225e-01	ci left: 3.107690e-04	ci right 4.761621e-04	k: 89	n:230000
Cons ci ratio: 7.054284e-02	ci left: 1.278026e-02	ci right 1.371902e-02	k: 3046	n:230000
KS ci ratio: 2.118112e-01	ci left: 1.329504e-03	ci right 1.648488e-03	k: 341	n:230000
PCK1   230000 perm   73 sec   (3148 perm/sec)   p_kst 1.482609e-03   p_cons 1.324348e-02   p_joint 3.869565e-04

Joint ci ratio: 4.042371e-01	ci left: 3.127735e-04	ci right 4.746930e-04	k: 93	n:240000
Cons ci ratio: 6.894206e-02	ci left: 1.283320e-02	ci right 1.375361e-02	k: 3189	n:240000
KS ci ratio: 2.084866e-01	ci left: 1.317529e-03	ci right 1.628044e-03	k: 352	n:240000
PCK1   240000 perm   77 sec   (3111 perm/sec)   p_kst 1.466667e-03   p_cons 1.328750e-02   p_joint 3.875000e-04

Joint ci ratio: 2.710382e-01	ci left: 7.228050e-04	ci right 9.530215e-04	k: 208	n:250000
Cons ci ratio: 6.742502e-02	ci left: 1.289000e-02	ci right 1.379334e-02	k: 3334	n:250000
KS ci ratio: 2.009385e-01	ci left: 1.367297e-03	ci right 1.676445e-03	k: 379	n:250000
PCK1   250000 perm   81 sec   (3075 perm/sec)   p_kst 1.516000e-03   p_cons 1.333600e-02   p_joint 8.320000e-04

Joint ci ratio: 2.757025e-01	ci left: 6.699242e-04	ci right 8.876070e-04	k: 201	n:260000
Cons ci ratio: 6.792908e-02	ci left: 1.221637e-02	ci right 1.307916e-02	k: 3287	n:260000
KS ci ratio: 1.958488e-01	ci left: 1.387812e-03	ci right 1.692703e-03	k: 399	n:260000
PCK1   260000 perm   86 sec   (3040 perm/sec)   p_kst 1.534615e-03   p_cons 1.264231e-02   p_joint 7.730769e-04

Joint ci ratio: 2.723539e-01	ci left: 6.623581e-04	ci right 8.745210e-04	k: 206	n:270000
Cons ci ratio: 6.664407e-02	ci left: 1.223002e-02	ci right 1.307679e-02	k: 3415	n:270000
KS ci ratio: 1.932118e-01	ci left: 1.375167e-03	ci right 1.672734e-03	k: 410	n:270000
PCK1   270000 perm   90 sec   (3004 perm/sec)   p_kst 1.518519e-03   p_cons 1.264815e-02   p_joint 7.629630e-04

Joint ci ratio: 2.666188e-01	ci left: 6.686743e-04	ci right 8.775969e-04	k: 215	n:280000
Cons ci ratio: 6.546676e-02	ci left: 1.222877e-02	ci right 1.305993e-02	k: 3539	n:280000
KS ci ratio: 1.891140e-01	ci left: 1.387264e-03	ci right 1.680351e-03	k: 428	n:280000
PCK1   280000 perm   94 sec   (2968 perm/sec)   p_kst 1.528571e-03   p_cons 1.263929e-02   p_joint 7.678571e-04

Joint ci ratio: 2.743579e-01	ci left: 6.070399e-04	ci right 8.031609e-04	k: 203	n:290000
Cons ci ratio: 6.427867e-02	ci left: 1.225488e-02	ci right 1.307214e-02	k: 3671	n:290000
KS ci ratio: 1.861022e-01	ci left: 1.385436e-03	ci right 1.672949e-03	k: 442	n:290000
PCK1   290000 perm   99 sec   (2936 perm/sec)   p_kst 1.524138e-03   p_cons 1.265862e-02   p_joint 7.000000e-04

Joint ci ratio: 2.691311e-01	ci left: 6.116555e-04	ci right 8.048676e-04	k: 211	n:300000
Cons ci ratio: 6.309424e-02	ci left: 1.230235e-02	ci right 1.310710e-02	k: 3810	n:300000
KS ci ratio: 1.832298e-01	ci left: 1.383764e-03	ci right 1.666006e-03	k: 456	n:300000
PCK1   300000 perm   103 sec   (2905 perm/sec)   p_kst 1.520000e-03   p_cons 1.270000e-02   p_joint 7.033333e-04

Joint ci ratio: 2.647950e-01	ci left: 6.129943e-04	ci right 8.029923e-04	k: 218	n:310000
Cons ci ratio: 6.208449e-02	ci left: 1.230242e-02	ci right 1.309383e-02	k: 3935	n:310000
KS ci ratio: 1.810649e-01	ci left: 1.372992e-03	ci right 1.649364e-03	k: 467	n:310000
PCK1   310000 perm   108 sec   (2873 perm/sec)   p_kst 1.506452e-03   p_cons 1.269355e-02   p_joint 7.032258e-04

Joint ci ratio: 2.660163e-01	ci left: 5.880030e-04	ci right 7.712355e-04	k: 216	n:320000
Cons ci ratio: 6.110648e-02	ci left: 1.230873e-02	ci right 1.308763e-02	k: 4062	n:320000
KS ci ratio: 1.780467e-01	ci left: 1.377839e-03	ci right 1.650066e-03	k: 483	n:320000
PCK1   320000 perm   113 sec   (2842 perm/sec)   p_kst 1.509375e-03   p_cons 1.269375e-02   p_joint 6.750000e-04

Joint ci ratio: 2.660190e-01	ci left: 5.701840e-04	ci right 7.478658e-04	k: 216	n:330000
Cons ci ratio: 6.020239e-02	ci left: 1.230281e-02	ci right 1.306942e-02	k: 4185	n:330000
KS ci ratio: 1.741313e-01	ci left: 1.399816e-03	ci right 1.669664e-03	k: 505	n:330000
PCK1   330000 perm   117 sec   (2811 perm/sec)   p_kst 1.530303e-03   p_cons 1.268182e-02   p_joint 6.545455e-04

Joint ci ratio: 2.630069e-01	ci left: 5.671446e-04	ci right 7.415487e-04	k: 221	n:340000
Cons ci ratio: 5.929548e-02	ci left: 1.231471e-02	ci right 1.307010e-02	k: 4314	n:340000
KS ci ratio: 1.714417e-01	ci left: 1.403669e-03	ci right 1.669648e-03	k: 521	n:340000
PCK1   340000 perm   122 sec   (2782 perm/sec)   p_kst 1.532353e-03   p_cons 1.268824e-02   p_joint 6.500000e-04

Joint ci ratio: 2.589558e-01	ci left: 5.696323e-04	ci right 7.416669e-04	k: 228	n:350000
Cons ci ratio: 5.845500e-02	ci left: 1.231474e-02	ci right 1.305907e-02	k: 4439	n:350000
KS ci ratio: 1.688730e-01	ci left: 1.407332e-03	ci right 1.669603e-03	k: 537	n:350000
PCK1   350000 perm   127 sec   (2753 perm/sec)   p_kst 1.534286e-03   p_cons 1.268286e-02   p_joint 6.514286e-04

Joint ci ratio: 2.545472e-01	ci left: 5.746017e-04	ci right 7.447139e-04	k: 236	n:360000
Cons ci ratio: 5.761734e-02	ci left: 1.232854e-02	ci right 1.306267e-02	k: 4569	n:360000
KS ci ratio: 1.650788e-01	ci left: 1.434784e-03	ci right 1.695567e-03	k: 562	n:360000
PCK1   360000 perm   132 sec   (2724 perm/sec)   p_kst 1.561111e-03   p_cons 1.269167e-02   p_joint 6.555556e-04

Joint ci ratio: 2.589604e-01	ci left: 5.388402e-04	ci right 7.015785e-04	k: 228	n:370000
Cons ci ratio: 5.685144e-02	ci left: 1.232567e-02	ci right 1.304956e-02	k: 4693	n:370000
KS ci ratio: 1.627819e-01	ci left: 1.437475e-03	ci right 1.694756e-03	k: 578	n:370000
PCK1   370000 perm   137 sec   (2696 perm/sec)   p_kst 1.562162e-03   p_cons 1.268378e-02   p_joint 6.162162e-04

Joint ci ratio: 2.578383e-01	ci left: 5.295821e-04	ci right 6.887197e-04	k: 230	n:380000
Cons ci ratio: 5.616846e-02	ci left: 1.229966e-02	ci right 1.301306e-02	k: 4808	n:380000
KS ci ratio: 1.605783e-01	ci left: 1.440049e-03	ci right 1.693964e-03	k: 594	n:380000
PCK1   380000 perm   142 sec   (2669 perm/sec)   p_kst 1.563158e-03   p_cons 1.265263e-02   p_joint 6.052632e-04

Joint ci ratio: 2.534857e-01	ci left: 5.352018e-04	ci right 6.928843e-04	k: 238	n:390000
Cons ci ratio: 5.548669e-02	ci left: 1.228515e-02	ci right 1.298878e-02	k: 4927	n:390000
KS ci ratio: 1.584617e-01	ci left: 1.442513e-03	ci right 1.693191e-03	k: 610	n:390000
PCK1   390000 perm   148 sec   (2643 perm/sec)   p_kst 1.564103e-03   p_cons 1.263333e-02   p_joint 6.102564e-04

Joint ci ratio: 2.493463e-01	ci left: 5.405619e-04	ci right 6.968195e-04	k: 246	n:400000
Cons ci ratio: 5.488977e-02	ci left: 1.224429e-02	ci right 1.293779e-02	k: 5035	n:400000
KS ci ratio: 1.569289e-01	ci left: 1.435266e-03	ci right 1.682045e-03	k: 622	n:400000
PCK1   400000 perm   153 sec   (2617 perm/sec)   p_kst 1.555000e-03   p_cons 1.258750e-02   p_joint 6.150000e-04

Joint ci ratio: 2.478467e-01	ci left: 5.342385e-04	ci right 6.875962e-04	k: 249	n:410000
Cons ci ratio: 5.422104e-02	ci left: 1.224637e-02	ci right 1.293128e-02	k: 5160	n:410000
KS ci ratio: 1.548304e-01	ci left: 1.440106e-03	ci right 1.684099e-03	k: 639	n:410000
PCK1   410000 perm   158 sec   (2592 perm/sec)   p_kst 1.558537e-03   p_cons 1.258537e-02   p_joint 6.073171e-04

Joint ci ratio: 2.449250e-01	ci left: 5.349223e-04	ci right 6.863908e-04	k: 255	n:420000
Cons ci ratio: 5.348913e-02	ci left: 1.228834e-02	ci right 1.296603e-02	k: 5302	n:420000
KS ci ratio: 1.526976e-01	ci left: 1.447026e-03	ci right 1.688505e-03	k: 657	n:420000
PCK1   420000 perm   164 sec   (2566 perm/sec)   p_kst 1.564286e-03   p_cons 1.262381e-02   p_joint 6.071429e-04

Joint ci ratio: 2.493517e-01	ci left: 5.028471e-04	ci right 6.482060e-04	k: 246	n:430000
Cons ci ratio: 5.281556e-02	ci left: 1.231464e-02	ci right 1.298497e-02	k: 5438	n:430000
KS ci ratio: 1.515513e-01	ci left: 1.435744e-03	ci right 1.673379e-03	k: 667	n:430000
PCK1   430000 perm   169 sec   (2542 perm/sec)   p_kst 1.551163e-03   p_cons 1.264651e-02   p_joint 5.720930e-04

Joint ci ratio: 2.551015e-01	ci left: 4.679976e-04	ci right 6.068988e-04	k: 235	n:440000
Cons ci ratio: 5.216206e-02	ci left: 1.234205e-02	ci right 1.300530e-02	k: 5575	n:440000
KS ci ratio: 1.497682e-01	ci left: 1.438106e-03	ci right 1.673081e-03	k: 683	n:440000
PCK1   440000 perm   175 sec   (2518 perm/sec)   p_kst 1.552273e-03   p_cons 1.267045e-02   p_joint 5.340909e-04

Joint ci ratio: 2.519191e-01	ci left: 4.700840e-04	ci right 6.075908e-04	k: 241	n:450000
Cons ci ratio: 5.157798e-02	ci left: 1.234634e-02	ci right 1.300218e-02	k: 5702	n:450000
KS ci ratio: 1.476248e-01	ci left: 1.448940e-03	ci right 1.681998e-03	k: 703	n:450000
PCK1   450000 perm   180 sec   (2495 perm/sec)   p_kst 1.562222e-03   p_cons 1.267111e-02   p_joint 5.355556e-04

Joint ci ratio: 2.584122e-01	ci left: 4.354448e-04	ci right 5.666324e-04	k: 229	n:460000
Cons ci ratio: 5.108414e-02	ci left: 1.231615e-02	ci right 1.296393e-02	k: 5813	n:460000
KS ci ratio: 1.459752e-01	ci left: 1.450946e-03	ci right 1.681492e-03	k: 719	n:460000
PCK1   460000 perm   186 sec   (2472 perm/sec)   p_kst 1.563043e-03   p_cons 1.263696e-02   p_joint 4.978261e-04

Joint ci ratio: 2.572968e-01	ci left: 4.301602e-04	ci right 5.591063e-04	k: 231	n:470000
Cons ci ratio: 5.052653e-02	ci left: 1.232508e-02	ci right 1.296605e-02	k: 5942	n:470000
KS ci ratio: 1.452721e-01	ci left: 1.434425e-03	ci right 1.661152e-03	k: 726	n:470000
PCK1   470000 perm   192 sec   (2449 perm/sec)   p_kst 1.544681e-03   p_cons 1.264255e-02   p_joint 4.914894e-04

Joint ci ratio: 2.567451e-01	ci left: 4.231474e-04	ci right 5.496758e-04	k: 232	n:480000
Cons ci ratio: 4.994516e-02	ci left: 1.235426e-02	ci right 1.298914e-02	k: 6081	n:480000
KS ci ratio: 1.441861e-01	ci left: 1.426628e-03	ci right 1.650291e-03	k: 737	n:480000
PCK1   480000 perm   198 sec   (2426 perm/sec)   p_kst 1.535417e-03   p_cons 1.266875e-02   p_joint 4.833333e-04

Joint ci ratio: 2.508895e-01	ci left: 4.355333e-04	ci right 5.623313e-04	k: 243	n:490000
Cons ci ratio: 4.942768e-02	ci left: 1.236011e-02	ci right 1.298853e-02	k: 6209	n:490000
KS ci ratio: 1.421766e-01	ci left: 1.438836e-03	ci right 1.661003e-03	k: 758	n:490000
PCK1   490000 perm   204 sec   (2403 perm/sec)   p_kst 1.546939e-03   p_cons 1.267143e-02   p_joint 4.959184e-04

Joint ci ratio: 2.463857e-01	ci left: 4.437014e-04	ci right 5.702036e-04	k: 252	n:500000
Cons ci ratio: 4.893378e-02	ci left: 1.236181e-02	ci right 1.298385e-02	k: 6335	n:500000
KS ci ratio: 1.402489e-01	ci left: 1.450576e-03	ci right 1.671265e-03	k: 779	n:500000
PCK1   500000 perm   210 sec   (2380 perm/sec)   p_kst 1.558000e-03   p_cons 1.267000e-02   p_joint 5.040000e-04

Joint ci ratio: 2.508920e-01	ci left: 4.184531e-04	ci right 5.402798e-04	k: 243	n:510000
Cons ci ratio: 4.846579e-02	ci left: 1.235766e-02	ci right 1.297338e-02	k: 6458	n:510000
KS ci ratio: 1.389195e-01	ci left: 1.450518e-03	ci right 1.668933e-03	k: 794	n:510000
PCK1   510000 perm   216 sec   (2360 perm/sec)   p_kst 1.556863e-03   p_cons 1.266275e-02   p_joint 4.764706e-04

Joint ci ratio: 2.115901e-01	ci left: 5.898467e-04	ci right 7.311976e-04	k: 342	n:520000
Cons ci ratio: 4.792992e-02	ci left: 1.239551e-02	ci right 1.300610e-02	k: 6603	n:520000
KS ci ratio: 1.376273e-01	ci left: 1.450471e-03	ci right 1.666682e-03	k: 809	n:520000
PCK1   520000 perm   222 sec   (2340 perm/sec)   p_kst 1.555769e-03   p_cons 1.269808e-02   p_joint 6.576923e-04

Joint ci ratio: 1.991918e-01	ci left: 6.574728e-04	ci right 8.046773e-04	k: 386	n:530000
Cons ci ratio: 4.886966e-02	ci left: 1.170113e-02	ci right 1.228913e-02	k: 6356	n:530000
KS ci ratio: 1.360406e-01	ci left: 1.457726e-03	ci right 1.672310e-03	k: 828	n:530000
PCK1   530000 perm   228 sec   (2320 perm/sec)   p_kst 1.562264e-03   p_cons 1.199245e-02   p_joint 7.283019e-04

Joint ci ratio: 1.974145e-01	ci left: 6.576167e-04	ci right 8.033816e-04	k: 393	n:540000
Cons ci ratio: 4.848306e-02	ci left: 1.167103e-02	ci right 1.225275e-02	k: 6458	n:540000
KS ci ratio: 1.352281e-01	ci left: 1.448621e-03	ci right 1.660488e-03	k: 838	n:540000
PCK1   540000 perm   235 sec   (2298 perm/sec)   p_kst 1.551852e-03   p_cons 1.195926e-02   p_joint 7.277778e-04

Joint ci ratio: 1.961741e-01	ci left: 6.543029e-04	ci right 7.983131e-04	k: 398	n:550000
Cons ci ratio: 4.810550e-02	ci left: 1.164204e-02	ci right 1.221767e-02	k: 6560	n:550000
KS ci ratio: 1.338784e-01	ci left: 1.452151e-03	ci right 1.662246e-03	k: 855	n:550000
PCK1   550000 perm   241 sec   (2278 perm/sec)   p_kst 1.554545e-03   p_cons 1.192727e-02   p_joint 7.236364e-04

Joint ci ratio: 1.959298e-01	ci left: 6.443166e-04	ci right 7.859312e-04	k: 399	n:560000
Cons ci ratio: 4.766066e-02	ci left: 1.165116e-02	ci right 1.222177e-02	k: 6683	n:560000
KS ci ratio: 1.331809e-01	ci left: 1.441754e-03	ci right 1.649172e-03	k: 864	n:560000
PCK1   560000 perm   248 sec   (2258 perm/sec)   p_kst 1.542857e-03   p_cons 1.193393e-02   p_joint 7.125000e-04

Joint ci ratio: 1.949580e-01	ci left: 6.396868e-04	ci right 7.795037e-04	k: 403	n:570000
Cons ci ratio: 4.725605e-02	ci left: 1.164611e-02	ci right 1.221150e-02	k: 6798	n:570000
KS ci ratio: 1.322670e-01	ci left: 1.436813e-03	ci right 1.641991e-03	k: 876	n:570000
PCK1   570000 perm   255 sec   (2238 perm/sec)   p_kst 1.536842e-03   p_cons 1.192632e-02   p_joint 7.070175e-04

Joint ci ratio: 1.930558e-01	ci left: 6.417810e-04	ci right 7.805261e-04	k: 411	n:580000
Cons ci ratio: 4.680338e-02	ci left: 1.167023e-02	ci right 1.223121e-02	k: 6930	n:580000
KS ci ratio: 1.306378e-01	ci left: 1.448725e-03	ci right 1.652858e-03	k: 898	n:580000
PCK1   580000 perm   261 sec   (2219 perm/sec)   p_kst 1.548276e-03   p_cons 1.194828e-02   p_joint 7.086207e-04

Joint ci ratio: 1.918952e-01	ci left: 6.389695e-04	ci right 7.761795e-04	k: 416	n:590000
Cons ci ratio: 4.648351e-02	ci left: 1.163324e-02	ci right 1.218852e-02	k: 7026	n:590000
KS ci ratio: 1.292785e-01	ci left: 1.455327e-03	ci right 1.658092e-03	k: 917	n:590000
PCK1   590000 perm   268 sec   (2200 perm/sec)   p_kst 1.554237e-03   p_cons 1.190847e-02   p_joint 7.050847e-04

Joint ci ratio: 1.905296e-01	ci left: 6.378412e-04	ci right 7.737213e-04	k: 422	n:600000
Cons ci ratio: 4.612426e-02	ci left: 1.162056e-02	ci right 1.217084e-02	k: 7136	n:600000
KS ci ratio: 1.279607e-01	ci left: 1.461720e-03	ci right 1.663142e-03	k: 936	n:600000
PCK1   600000 perm   275 sec   (2180 perm/sec)   p_kst 1.560000e-03   p_cons 1.189333e-02   p_joint 7.033333e-04

Joint ci ratio: 1.894137e-01	ci left: 6.351916e-04	ci right 7.696236e-04	k: 427	n:610000
Cons ci ratio: 4.566175e-02	ci left: 1.166504e-02	ci right 1.221174e-02	k: 7281	n:610000
KS ci ratio: 1.267488e-01	ci left: 1.466325e-03	ci right 1.666325e-03	k: 954	n:610000
PCK1   610000 perm   283 sec   (2159 perm/sec)   p_kst 1.563934e-03   p_cons 1.193607e-02   p_joint 7.000000e-04

Joint ci ratio: 1.964286e-01	ci left: 5.788941e-04	ci right 7.064920e-04	k: 397	n:620000
Cons ci ratio: 3.964286e-02	ci left: 1.521793e-02	ci right 1.583500e-02	k: 9625	n:620000
KS ci ratio: 1.255707e-01	ci left: 1.470791e-03	ci right 1.669397e-03	k: 972	n:620000
PCK1   620000 perm   290 sec   (2142 perm/sec)   p_kst 1.567742e-03   p_cons 1.552419e-02   p_joint 6.403226e-04

Joint ci ratio: 1.610352e-01	ci left: 8.640098e-04	ci right 1.016830e-03	k: 591	n:630000
Cons ci ratio: 3.933772e-02	ci left: 1.521212e-02	ci right 1.582409e-02	k: 9775	n:630000
KS ci ratio: 1.246771e-01	ci left: 1.468972e-03	ci right 1.665816e-03	k: 986	n:630000
PCK1   630000 perm   297 sec   (2124 perm/sec)   p_kst 1.565079e-03   p_cons 1.551587e-02   p_joint 9.380952e-04

Joint ci ratio: 1.602257e-01	ci left: 8.595076e-04	ci right 1.010693e-03	k: 597	n:640000
Cons ci ratio: 3.903153e-02	ci left: 1.521270e-02	ci right 1.581983e-02	k: 9929	n:640000
KS ci ratio: 1.241756e-01	ci left: 1.458130e-03	ci right 1.652677e-03	k: 994	n:640000
PCK1   640000 perm   304 sec   (2107 perm/sec)   p_kst 1.553125e-03   p_cons 1.551406e-02   p_joint 9.328125e-04

Joint ci ratio: 1.353267e-01	ci left: 1.201973e-03	ci right 1.377905e-03	k: 837	n:650000
Cons ci ratio: 3.876167e-02	ci left: 1.519042e-02	ci right 1.579237e-02	k: 10068	n:650000
KS ci ratio: 1.231281e-01	ci left: 1.461042e-03	ci right 1.654213e-03	k: 1011	n:650000
PCK1   650000 perm   311 sec   (2090 perm/sec)   p_kst 1.555385e-03   p_cons 1.548923e-02   p_joint 1.287692e-03

Joint ci ratio: 1.332737e-01	ci left: 1.221832e-03	ci right 1.397743e-03	k: 863	n:660000
Cons ci ratio: 3.847246e-02	ci left: 1.518834e-02	ci right 1.578562e-02	k: 10220	n:660000
KS ci ratio: 1.218106e-01	ci left: 1.471217e-03	ci right 1.663503e-03	k: 1033	n:660000
PCK1   660000 perm   318 sec   (2073 perm/sec)   p_kst 1.565152e-03   p_cons 1.548485e-02   p_joint 1.307576e-03

Joint ci ratio: 1.337408e-01	ci left: 1.194939e-03	ci right 1.367629e-03	k: 857	n:670000
Cons ci ratio: 3.817841e-02	ci left: 1.519521e-02	ci right 1.578809e-02	k: 10378	n:670000
KS ci ratio: 1.211682e-01	ci left: 1.465178e-03	ci right 1.655592e-03	k: 1044	n:670000
PCK1   670000 perm   326 sec   (2057 perm/sec)   p_kst 1.558209e-03   p_cons 1.548955e-02   p_joint 1.279104e-03

Joint ci ratio: 1.327389e-01	ci left: 1.195847e-03	ci right 1.367271e-03	k: 870	n:680000
Cons ci ratio: 3.788187e-02	ci left: 1.520918e-02	ci right 1.579790e-02	k: 10541	n:680000
KS ci ratio: 1.198557e-01	ci left: 1.476435e-03	ci right 1.666087e-03	k: 1067	n:680000
PCK1   680000 perm   333 sec   (2040 perm/sec)   p_kst 1.569118e-03   p_cons 1.550147e-02   p_joint 1.279412e-03

Joint ci ratio: 1.379097e-01	ci left: 1.088897e-03	ci right 1.251570e-03	k: 806	n:690000
Cons ci ratio: 3.758145e-02	ci left: 1.523138e-02	ci right 1.581618e-02	k: 10710	n:690000
KS ci ratio: 1.189130e-01	ci left: 1.478940e-03	ci right 1.667314e-03	k: 1084	n:690000
PCK1   690000 perm   341 sec   (2024 perm/sec)   p_kst 1.571014e-03   p_cons 1.552174e-02   p_joint 1.168116e-03

Joint ci ratio: 1.367286e-01	ci left: 1.092654e-03	ci right 1.254377e-03	k: 820	n:700000
Cons ci ratio: 3.731768e-02	ci left: 1.522889e-02	ci right 1.580941e-02	k: 10862	n:700000
KS ci ratio: 1.177782e-01	ci left: 1.486924e-03	ci right 1.674382e-03	k: 1105	n:700000
PCK1   700000 perm   348 sec   (2010 perm/sec)   p_kst 1.578571e-03   p_cons 1.551714e-02   p_joint 1.171429e-03

Joint ci ratio: 1.355773e-01	ci left: 1.096311e-03	ci right 1.257099e-03	k: 834	n:710000
Cons ci ratio: 3.706623e-02	ci left: 1.522091e-02	ci right 1.579713e-02	k: 11010	n:710000
KS ci ratio: 1.166753e-01	ci left: 1.494692e-03	ci right 1.681243e-03	k: 1126	n:710000
PCK1   710000 perm   356 sec   (1994 perm/sec)   p_kst 1.585915e-03   p_cons 1.550704e-02   p_joint 1.174648e-03

Joint ci ratio: 1.345340e-01	ci left: 1.098530e-03	ci right 1.258304e-03	k: 847	n:720000
Cons ci ratio: 3.682649e-02	ci left: 1.520766e-02	ci right 1.577958e-02	k: 11154	n:720000
KS ci ratio: 1.159066e-01	ci left: 1.494160e-03	ci right 1.679332e-03	k: 1141	n:720000
PCK1   720000 perm   364 sec   (1979 perm/sec)   p_kst 1.584722e-03   p_cons 1.549167e-02   p_joint 1.176389e-03

Joint ci ratio: 1.335920e-01	ci left: 1.099369e-03	ci right 1.258057e-03	k: 859	n:730000
Cons ci ratio: 3.657985e-02	ci left: 1.520429e-02	ci right 1.577217e-02	k: 11305	n:730000
KS ci ratio: 1.151528e-01	ci left: 1.493646e-03	ci right 1.677469e-03	k: 1156	n:730000
PCK1   730000 perm   372 sec   (1963 perm/sec)   p_kst 1.583562e-03   p_cons 1.548630e-02   p_joint 1.176712e-03

Joint ci ratio: 1.327459e-01	ci left: 1.098882e-03	ci right 1.256416e-03	k: 870	n:740000
Cons ci ratio: 3.632843e-02	ci left: 1.520905e-02	ci right 1.577313e-02	k: 11462	n:740000
KS ci ratio: 1.144136e-01	ci left: 1.493150e-03	ci right 1.675652e-03	k: 1171	n:740000
PCK1   740000 perm   380 sec   (1949 perm/sec)   p_kst 1.582432e-03   p_cons 1.548919e-02   p_joint 1.175676e-03

Joint ci ratio: 1.331300e-01	ci left: 1.077785e-03	ci right 1.232776e-03	k: 865	n:750000
Cons ci ratio: 3.610106e-02	ci left: 1.519785e-02	ci right 1.575790e-02	k: 11607	n:750000
KS ci ratio: 1.134018e-01	ci left: 1.500444e-03	ci right 1.682107e-03	k: 1192	n:750000
PCK1   750000 perm   388 sec   (1934 perm/sec)   p_kst 1.589333e-03   p_cons 1.547600e-02   p_joint 1.153333e-03

Joint ci ratio: 1.322925e-01	ci left: 1.077597e-03	ci right 1.231509e-03	k: 876	n:760000
Cons ci ratio: 3.587946e-02	ci left: 1.518564e-02	ci right 1.574174e-02	k: 11751	n:760000
KS ci ratio: 1.128360e-01	ci left: 1.496044e-03	ci right 1.676210e-03	k: 1204	n:760000
PCK1   760000 perm   396 sec   (1921 perm/sec)   p_kst 1.584211e-03   p_cons 1.546184e-02   p_joint 1.152632e-03

Joint ci ratio: 1.315448e-01	ci left: 1.076160e-03	ci right 1.228931e-03	k: 886	n:770000
Cons ci ratio: 3.567865e-02	ci left: 1.515961e-02	ci right 1.571158e-02	k: 11884	n:770000
KS ci ratio: 1.122324e-01	ci left: 1.493022e-03	ci right 1.671800e-03	k: 1217	n:770000
PCK1   770000 perm   404 sec   (1907 perm/sec)   p_kst 1.580519e-03   p_cons 1.543377e-02   p_joint 1.150649e-03

Joint ci ratio: 1.313976e-01	ci left: 1.064843e-03	ci right 1.215824e-03	k: 888	n:780000
Cons ci ratio: 3.546619e-02	ci left: 1.514695e-02	ci right 1.569512e-02	k: 12027	n:780000
KS ci ratio: 1.115024e-01	ci left: 1.493820e-03	ci right 1.671453e-03	k: 1233	n:780000
PCK1   780000 perm   412 sec   (1893 perm/sec)   p_kst 1.580769e-03   p_cons 1.541923e-02   p_joint 1.138462e-03

Joint ci ratio: 1.321447e-01	ci left: 1.039122e-03	ci right 1.187360e-03	k: 878	n:790000
Cons ci ratio: 3.521929e-02	ci left: 1.516726e-02	ci right 1.571226e-02	k: 12196	n:790000
KS ci ratio: 1.107422e-01	ci left: 1.495832e-03	ci right 1.672412e-03	k: 1250	n:790000
PCK1   790000 perm   420 sec   (1879 perm/sec)   p_kst 1.582278e-03   p_cons 1.543797e-02   p_joint 1.111392e-03

Joint ci ratio: 1.312517e-01	ci left: 1.040639e-03	ci right 1.188012e-03	k: 890	n:800000
Cons ci ratio: 3.500336e-02	ci left: 1.516476e-02	ci right 1.570626e-02	k: 12347	n:800000
KS ci ratio: 1.098671e-01	ci left: 1.501444e-03	ci right 1.677196e-03	k: 1270	n:800000
PCK1   800000 perm   429 sec   (1866 perm/sec)   p_kst 1.587500e-03   p_cons 1.543375e-02   p_joint 1.112500e-03

Joint ci ratio: 1.306667e-01	ci left: 1.037344e-03	ci right 1.183545e-03	k: 898	n:810000
Cons ci ratio: 3.480125e-02	ci left: 1.515376e-02	ci right 1.569169e-02	k: 12491	n:810000
KS ci ratio: 1.093951e-01	ci left: 1.496116e-03	ci right 1.670443e-03	k: 1281	n:810000
PCK1   810000 perm   437 sec   (1853 perm/sec)   p_kst 1.581481e-03   p_cons 1.542099e-02   p_joint 1.108642e-03

Joint ci ratio: 1.304498e-01	ci left: 1.028232e-03	ci right 1.172890e-03	k: 901	n:820000
Cons ci ratio: 3.459704e-02	ci left: 1.514788e-02	ci right 1.568238e-02	k: 12639	n:820000
KS ci ratio: 1.087188e-01	ci left: 1.496850e-03	ci right 1.670116e-03	k: 1297	n:820000
PCK1   820000 perm   446 sec   (1839 perm/sec)   p_kst 1.581707e-03   p_cons 1.541341e-02   p_joint 1.098780e-03

Joint ci ratio: 1.298754e-01	ci left: 1.025169e-03	ci right 1.168711e-03	k: 909	n:830000
Cons ci ratio: 3.437455e-02	ci left: 1.516127e-02	ci right 1.569273e-02	k: 12803	n:830000
KS ci ratio: 1.079725e-01	ci left: 1.499915e-03	ci right 1.672268e-03	k: 1315	n:830000
PCK1   830000 perm   455 sec   (1824 perm/sec)   p_kst 1.584337e-03   p_cons 1.542530e-02   p_joint 1.095181e-03

Joint ci ratio: 1.294497e-01	ci left: 1.019875e-03	ci right 1.162173e-03	k: 915	n:840000
Cons ci ratio: 3.418845e-02	ci left: 1.514601e-02	ci right 1.567401e-02	k: 12943	n:840000
KS ci ratio: 1.075650e-01	ci left: 1.493643e-03	ci right 1.664586e-03	k: 1325	n:840000
PCK1   840000 perm   464 sec   (1810 perm/sec)   p_kst 1.577381e-03   p_cons 1.540833e-02   p_joint 1.089286e-03

Joint ci ratio: 1.299486e-01	ci left: 9.999078e-04	ci right 1.139999e-03	k: 908	n:850000
Cons ci ratio: 3.397238e-02	ci left: 1.516029e-02	ci right 1.568537e-02	k: 13108	n:850000
KS ci ratio: 1.069218e-01	ci left: 1.494389e-03	ci right 1.664331e-03	k: 1341	n:850000
PCK1   850000 perm   473 sec   (1797 perm/sec)   p_kst 1.577647e-03   p_cons 1.542118e-02   p_joint 1.068235e-03

Joint ci ratio: 1.291694e-01	ci left: 1.000657e-03	ci right 1.139948e-03	k: 919	n:860000
Cons ci ratio: 3.376683e-02	ci left: 1.516848e-02	ci right 1.569061e-02	k: 13268	n:860000
KS ci ratio: 1.060557e-01	ci left: 1.501913e-03	ci right 1.671240e-03	k: 1363	n:860000
PCK1   860000 perm   482 sec   (1785 perm/sec)   p_kst 1.584884e-03   p_cons 1.542791e-02   p_joint 1.068605e-03

Joint ci ratio: 1.282661e-01	ci left: 1.003617e-03	ci right 1.142268e-03	k: 932	n:870000
Cons ci ratio: 3.356622e-02	ci left: 1.517535e-02	ci right 1.569455e-02	k: 13427	n:870000
KS ci ratio: 1.053626e-01	ci left: 1.504792e-03	ci right 1.673267e-03	k: 1381	n:870000
PCK1   870000 perm   491 sec   (1773 perm/sec)   p_kst 1.587356e-03   p_cons 1.543333e-02   p_joint 1.071264e-03

Joint ci ratio: 1.277199e-01	ci left: 1.001012e-03	ci right 1.138670e-03	k: 940	n:880000
Cons ci ratio: 3.339038e-02	ci left: 1.516291e-02	ci right 1.567892e-02	k: 13569	n:880000
KS ci ratio: 1.048707e-01	ci left: 1.502077e-03	ci right 1.669413e-03	k: 1394	n:880000
PCK1   880000 perm   499 sec   (1762 perm/sec)   p_kst 1.584091e-03   p_cons 1.541932e-02   p_joint 1.068182e-03

Joint ci ratio: 1.268466e-01	ci left: 1.003906e-03	ci right 1.140947e-03	k: 953	n:890000
Cons ci ratio: 3.320989e-02	ci left: 1.515745e-02	ci right 1.567043e-02	k: 13717	n:890000
KS ci ratio: 1.042005e-01	ci left: 1.504895e-03	ci right 1.671409e-03	k: 1412	n:890000
PCK1   890000 perm   508 sec   (1751 perm/sec)   p_kst 1.586517e-03   p_cons 1.541236e-02   p_joint 1.070787e-03

Joint ci ratio: 1.259257e-01	ci left: 1.007816e-03	ci right 1.144317e-03	k: 967	n:900000
Cons ci ratio: 3.302262e-02	ci left: 1.516093e-02	ci right 1.567108e-02	k: 13873	n:900000
KS ci ratio: 1.034705e-01	ci left: 1.509820e-03	ci right 1.675637e-03	k: 1432	n:900000
PCK1   900000 perm   518 sec   (1739 perm/sec)   p_kst 1.591111e-03   p_cons 1.541444e-02   p_joint 1.074444e-03

Joint ci ratio: 1.253445e-01	ci left: 1.006320e-03	ci right 1.141943e-03	k: 976	n:910000
Cons ci ratio: 3.284086e-02	ci left: 1.516217e-02	ci right 1.566950e-02	k: 14027	n:910000
KS ci ratio: 1.029689e-01	ci left: 1.508216e-03	ci right 1.673005e-03	k: 1446	n:910000
PCK1   910000 perm   527 sec   (1728 perm/sec)   p_kst 1.589011e-03   p_cons 1.541429e-02   p_joint 1.072527e-03

Joint ci ratio: 1.244558e-01	ci left: 1.010124e-03	ci right 1.145223e-03	k: 990	n:920000
Cons ci ratio: 3.267143e-02	ci left: 1.515475e-02	ci right 1.565917e-02	k: 14173	n:920000
KS ci ratio: 1.024393e-01	ci left: 1.507707e-03	ci right 1.671543e-03	k: 1461	n:920000
PCK1   920000 perm   536 sec   (1717 perm/sec)   p_kst 1.588043e-03   p_cons 1.540543e-02   p_joint 1.076087e-03

Joint ci ratio: 1.166454e-01	ci left: 1.142141e-03	ci right 1.284651e-03	k: 1127	n:930000
Cons ci ratio: 3.250805e-02	ci left: 1.514431e-02	ci right 1.564581e-02	k: 14316	n:930000
KS ci ratio: 1.018144e-01	ci left: 1.510356e-03	ci right 1.673419e-03	k: 1479	n:930000
PCK1   930000 perm   545 sec   (1707 perm/sec)   p_kst 1.590323e-03   p_cons 1.539355e-02   p_joint 1.211828e-03

Joint ci ratio: 1.159281e-01	ci left: 1.144451e-03	ci right 1.286311e-03	k: 1141	n:940000
Cons ci ratio: 3.231307e-02	ci left: 1.516575e-02	ci right 1.566490e-02	k: 14489	n:940000
KS ci ratio: 1.013703e-01	ci left: 1.507767e-03	ci right 1.669797e-03	k: 1492	n:940000
PCK1   940000 perm   554 sec   (1696 perm/sec)   p_kst 1.587234e-03   p_cons 1.541383e-02   p_joint 1.213830e-03

Joint ci ratio: 1.152738e-01	ci left: 1.145693e-03	ci right 1.286850e-03	k: 1154	n:950000
Cons ci ratio: 3.213938e-02	ci left: 1.517005e-02	ci right 1.566660e-02	k: 14646	n:950000
KS ci ratio: 1.009320e-01	ci left: 1.505234e-03	ci right 1.666251e-03	k: 1505	n:950000
PCK1   950000 perm   564 sec   (1685 perm/sec)   p_kst 1.584211e-03   p_cons 1.541684e-02   p_joint 1.214737e-03

Joint ci ratio: 1.154749e-01	ci left: 1.129711e-03	ci right 1.269159e-03	k: 1150	n:960000
Cons ci ratio: 3.197174e-02	ci left: 1.517116e-02	ci right 1.566511e-02	k: 14800	n:960000
KS ci ratio: 1.006654e-01	ci left: 1.497677e-03	ci right 1.657438e-03	k: 1513	n:960000
PCK1   960000 perm   574 sec   (1674 perm/sec)   p_kst 1.576042e-03   p_cons 1.541667e-02   p_joint 1.197917e-03

Joint ci ratio: 1.150759e-01	ci left: 1.126074e-03	ci right 1.264561e-03	k: 1158	n:970000
Cons ci ratio: 3.180239e-02	ci left: 1.517634e-02	ci right 1.566780e-02	k: 14958	n:970000
KS ci ratio: 1.003019e-01	ci left: 1.493292e-03	ci right 1.651976e-03	k: 1524	n:970000
PCK1   970000 perm   583 sec   (1663 perm/sec)   p_kst 1.571134e-03   p_cons 1.542062e-02   p_joint 1.193814e-03

Joint ci ratio: 1.157789e-01	ci left: 1.100710e-03	ci right 1.236960e-03	k: 1144	n:980000
Cons ci ratio: 3.164632e-02	ci left: 1.517130e-02	ci right 1.566014e-02	k: 15106	n:980000
KS ci ratio: 9.990980e-02	ci left: 1.489993e-03	ci right 1.647671e-03	k: 1536	n:980000
PCK1   980000 perm   593 sec   (1653 perm/sec)   p_kst 1.567347e-03   p_cons 1.541429e-02   p_joint 1.167347e-03

Joint ci ratio: 1.164947e-01	ci left: 1.075860e-03	ci right 1.209914e-03	k: 1130	n:990000
Cons ci ratio: 3.150303e-02	ci left: 1.515635e-02	ci right 1.564245e-02	k: 15244	n:990000
KS ci ratio: 9.936175e-02	ci left: 1.491686e-03	ci right 1.648627e-03	k: 1553	n:990000
PCK1   990000 perm   603 sec   (1642 perm/sec)   p_kst 1.568687e-03   p_cons 1.539798e-02   p_joint 1.141414e-03

Joint ci ratio: 1.161873e-01	ci left: 1.070927e-03	ci right 1.203990e-03	k: 1136	n:1000000
Cons ci ratio: 3.135648e-02	ci left: 1.514666e-02	ci right 1.563015e-02	k: 15387	n:1000000
KS ci ratio: 9.882262e-02	ci left: 1.493348e-03	ci right 1.649562e-03	k: 1570	n:1000000
PCK1   1000000 perm   613 sec   (1632 perm/sec)   p_kst 1.570000e-03   p_cons 1.538700e-02   p_joint 1.136000e-03

Joint ci ratio: 1.156293e-01	ci left: 1.070899e-03	ci right 1.203276e-03	k: 1147	n:1010000
Cons ci ratio: 3.120380e-02	ci left: 1.514503e-02	ci right 1.562607e-02	k: 15538	n:1010000
KS ci ratio: 9.829217e-02	ci left: 1.494979e-03	ci right 1.650476e-03	k: 1587	n:1010000
PCK1   1010000 perm   623 sec   (1622 perm/sec)   p_kst 1.571287e-03   p_cons 1.538416e-02   p_joint 1.135644e-03

Joint ci ratio: 1.151788e-01	ci left: 1.068969e-03	ci right 1.200557e-03	k: 1156	n:1020000
Cons ci ratio: 3.106439e-02	ci left: 1.513273e-02	ci right 1.561120e-02	k: 15678	n:1020000
KS ci ratio: 9.783124e-02	ci left: 1.494668e-03	ci right 1.649361e-03	k: 1602	n:1020000
PCK1   1020000 perm   633 sec   (1611 perm/sec)   p_kst 1.570588e-03   p_cons 1.537059e-02   p_joint 1.133333e-03

Joint ci ratio: 1.151795e-01	ci left: 1.058590e-03	ci right 1.188902e-03	k: 1156	n:1030000
Cons ci ratio: 3.094074e-02	ci left: 1.510719e-02	ci right 1.558292e-02	k: 15804	n:1030000
KS ci ratio: 9.737674e-02	ci left: 1.494364e-03	ci right 1.648267e-03	k: 1617	n:1030000
PCK1   1030000 perm   643 sec   (1602 perm/sec)   p_kst 1.569903e-03   p_cons 1.534369e-02   p_joint 1.122330e-03

Joint ci ratio: 1.147835e-01	ci left: 1.055882e-03	ci right 1.185384e-03	k: 1164	n:1040000
Cons ci ratio: 3.080874e-02	ci left: 1.509169e-02	ci right 1.556486e-02	k: 15940	n:1040000
KS ci ratio: 9.704763e-02	ci left: 1.490315e-03	ci right 1.643252e-03	k: 1628	n:1040000
PCK1   1040000 perm   653 sec   (1592 perm/sec)   p_kst 1.565385e-03   p_cons 1.532692e-02   p_joint 1.119231e-03

Joint ci ratio: 1.159864e-01	ci left: 1.023628e-03	ci right 1.150579e-03	k: 1140	n:1050000
Cons ci ratio: 3.066582e-02	ci left: 1.508877e-02	ci right 1.555962e-02	k: 16089	n:1050000
KS ci ratio: 9.651575e-02	ci left: 1.492849e-03	ci right 1.645160e-03	k: 1646	n:1050000
PCK1   1050000 perm   663 sec   (1583 perm/sec)   p_kst 1.567619e-03   p_cons 1.532286e-02   p_joint 1.085714e-03

Joint ci ratio: 1.153311e-01	ci left: 1.025880e-03	ci right 1.152343e-03	k: 1153	n:1060000
Cons ci ratio: 3.050866e-02	ci left: 1.510183e-02	ci right 1.557063e-02	k: 16255	n:1060000
KS ci ratio: 9.593483e-02	ci left: 1.497180e-03	ci right 1.648961e-03	k: 1666	n:1060000
PCK1   1060000 perm   674 sec   (1573 perm/sec)   p_kst 1.571698e-03   p_cons 1.533491e-02   p_joint 1.087736e-03

Joint ci ratio: 1.163968e-01	ci left: 9.972343e-04	ci right 1.121380e-03	k: 1132	n:1070000
Cons ci ratio: 3.034450e-02	ci left: 1.512393e-02	ci right 1.559085e-02	k: 16431	n:1070000
KS ci ratio: 9.553458e-02	ci left: 1.495958e-03	ci right 1.646947e-03	k: 1680	n:1070000
PCK1   1070000 perm   684 sec   (1564 perm/sec)   p_kst 1.570093e-03   p_cons 1.535607e-02   p_joint 1.057944e-03

Joint ci ratio: 1.160390e-01	ci left: 9.942936e-04	ci right 1.117667e-03	k: 1139	n:1080000
Cons ci ratio: 3.023108e-02	ci left: 1.509784e-02	ci right 1.556218e-02	k: 16555	n:1080000
KS ci ratio: 9.511120e-02	ci left: 1.495665e-03	ci right 1.645918e-03	k: 1695	n:1080000
PCK1   1080000 perm   694 sec   (1555 perm/sec)   p_kst 1.569444e-03   p_cons 1.532870e-02   p_joint 1.054630e-03

Joint ci ratio: 1.157857e-01	ci left: 9.896257e-04	ci right 1.112133e-03	k: 1144	n:1090000
Cons ci ratio: 3.009784e-02	ci left: 1.509317e-02	ci right 1.555528e-02	k: 16702	n:1090000
KS ci ratio: 9.474888e-02	ci left: 1.493586e-03	ci right 1.643027e-03	k: 1708	n:1090000
PCK1   1090000 perm   705 sec   (1547 perm/sec)   p_kst 1.566972e-03   p_cons 1.532294e-02   p_joint 1.049541e-03

Joint ci ratio: 1.151338e-01	ci left: 9.921061e-04	ci right 1.114182e-03	k: 1157	n:1100000
Cons ci ratio: 2.994200e-02	ci left: 1.511296e-02	ci right 1.557324e-02	k: 16876	n:1100000
KS ci ratio: 9.436324e-02	ci left: 1.492434e-03	ci right 1.641119e-03	k: 1722	n:1100000
PCK1   1100000 perm   715 sec   (1539 perm/sec)   p_kst 1.565455e-03   p_cons 1.534182e-02   p_joint 1.051818e-03

Joint ci ratio: 1.143463e-01	ci left: 9.971690e-04	ci right 1.118972e-03	k: 1173	n:1110000
Cons ci ratio: 2.980631e-02	ci left: 1.511451e-02	ci right 1.557271e-02	k: 17030	n:1110000
KS ci ratio: 9.371247e-02	ci left: 1.500103e-03	ci right 1.648464e-03	k: 1746	n:1110000
PCK1   1110000 perm   725 sec   (1530 perm/sec)   p_kst 1.572973e-03   p_cons 1.534234e-02   p_joint 1.056757e-03

Joint ci ratio: 1.140554e-01	ci left: 9.934698e-04	ci right 1.114491e-03	k: 1179	n:1120000
Cons ci ratio: 2.967245e-02	ci left: 1.511603e-02	ci right 1.557219e-02	k: 17184	n:1120000
KS ci ratio: 9.341902e-02	ci left: 1.496300e-03	ci right 1.643797e-03	k: 1757	n:1120000
PCK1   1120000 perm   736 sec   (1521 perm/sec)   p_kst 1.568750e-03   p_cons 1.534286e-02   p_joint 1.052679e-03

Joint ci ratio: 1.140560e-01	ci left: 9.846777e-04	ci right 1.104629e-03	k: 1179	n:1130000
Cons ci ratio: 2.954471e-02	ci left: 1.511314e-02	ci right 1.556722e-02	k: 17333	n:1130000
KS ci ratio: 9.312832e-02	ci left: 1.492566e-03	ci right 1.639211e-03	k: 1768	n:1130000
PCK1   1130000 perm   747 sec   (1512 perm/sec)   p_kst 1.564602e-03   p_cons 1.533894e-02   p_joint 1.043363e-03

Joint ci ratio: 1.145434e-01	ci left: 9.675186e-04	ci right 1.085917e-03	k: 1169	n:1140000
Cons ci ratio: 2.940835e-02	ci left: 1.512076e-02	ci right 1.557294e-02	k: 17494	n:1140000
KS ci ratio: 9.281420e-02	ci left: 1.489755e-03	ci right 1.635603e-03	k: 1780	n:1140000
PCK1   1140000 perm   758 sec   (1503 perm/sec)   p_kst 1.561404e-03   p_cons 1.534561e-02   p_joint 1.025439e-03

Joint ci ratio: 1.141539e-01	ci left: 9.658629e-04	ci right 1.083630e-03	k: 1177	n:1150000
Cons ci ratio: 2.926460e-02	ci left: 1.513775e-02	ci right 1.558818e-02	k: 17666	n:1150000
KS ci ratio: 9.242582e-02	ci left: 1.489542e-03	ci right 1.634726e-03	k: 1795	n:1150000
PCK1   1150000 perm   769 sec   (1495 perm/sec)   p_kst 1.560870e-03   p_cons 1.536174e-02   p_joint 1.023478e-03

Joint ci ratio: 1.137204e-01	ci left: 9.650740e-04	ci right 1.082268e-03	k: 1186	n:1160000
Cons ci ratio: 2.912129e-02	ci left: 1.515615e-02	ci right 1.560489e-02	k: 17840	n:1160000
KS ci ratio: 9.206774e-02	ci left: 1.488491e-03	ci right 1.632981e-03	k: 1809	n:1160000
PCK1   1160000 perm   781 sec   (1486 perm/sec)   p_kst 1.559483e-03   p_cons 1.537931e-02   p_joint 1.022414e-03

Joint ci ratio: 1.133867e-01	ci left: 9.626384e-04	ci right 1.079171e-03	k: 1193	n:1170000
Cons ci ratio: 2.899886e-02	ci left: 1.515474e-02	ci right 1.560151e-02	k: 17991	n:1170000
KS ci ratio: 9.181468e-02	ci left: 1.484119e-03	ci right 1.627768e-03	k: 1819	n:1170000
PCK1   1170000 perm   792 sec   (1478 perm/sec)   p_kst 1.554701e-03   p_cons 1.537692e-02   p_joint 1.019658e-03

Joint ci ratio: 1.129618e-01	ci left: 9.618916e-04	ci right 1.077868e-03	k: 1202	n:1180000
Cons ci ratio: 2.888282e-02	ci left: 1.514830e-02	ci right 1.559307e-02	k: 18136	n:1180000
KS ci ratio: 9.143867e-02	ci left: 1.483963e-03	ci right 1.626976e-03	k: 1834	n:1180000
PCK1   1180000 perm   803 sec   (1469 perm/sec)   p_kst 1.554237e-03   p_cons 1.536949e-02   p_joint 1.018644e-03

Joint ci ratio: 1.124952e-01	ci left: 9.619749e-04	ci right 1.077451e-03	k: 1212	n:1190000
Cons ci ratio: 2.874900e-02	ci left: 1.516200e-02	ci right 1.560507e-02	k: 18305	n:1190000
KS ci ratio: 9.116600e-02	ci left: 1.480525e-03	ci right 1.622759e-03	k: 1845	n:1190000
PCK1   1190000 perm   814 sec   (1461 perm/sec)   p_kst 1.550420e-03   p_cons 1.538235e-02   p_joint 1.018487e-03

Joint ci ratio: 1.136265e-01	ci left: 9.345233e-04	ci right 1.047907e-03	k: 1188	n:1200000
Cons ci ratio: 2.863671e-02	ci left: 1.515479e-02	ci right 1.559589e-02	k: 18449	n:1200000
KS ci ratio: 9.077345e-02	ci left: 1.481217e-03	ci right 1.622873e-03	k: 1861	n:1200000
PCK1   1200000 perm   826 sec   (1453 perm/sec)   p_kst 1.550833e-03   p_cons 1.537417e-02   p_joint 9.900000e-04

Joint ci ratio: 1.133886e-01	ci left: 9.308148e-04	ci right 1.043497e-03	k: 1193	n:1210000
Cons ci ratio: 2.850938e-02	ci left: 1.516493e-02	ci right 1.560434e-02	k: 18614	n:1210000
KS ci ratio: 9.055511e-02	ci left: 1.476245e-03	ci right 1.617067e-03	k: 1870	n:1210000
PCK1   1210000 perm   837 sec   (1445 perm/sec)   p_kst 1.545455e-03   p_cons 1.538347e-02   p_joint 9.859504e-04

Joint ci ratio: 1.128230e-01	ci left: 9.327430e-04	ci right 1.045058e-03	k: 1205	n:1220000
Cons ci ratio: 2.838910e-02	ci left: 1.516921e-02	ci right 1.560686e-02	k: 18772	n:1220000
KS ci ratio: 9.012254e-02	ci left: 1.478566e-03	ci right 1.618900e-03	k: 1888	n:1220000
PCK1   1220000 perm   849 sec   (1437 perm/sec)   p_kst 1.547541e-03   p_cons 1.538689e-02   p_joint 9.877049e-04

Joint ci ratio: 1.123581e-01	ci left: 9.330608e-04	ci right 1.044920e-03	k: 1215	n:1230000
Cons ci ratio: 2.826806e-02	ci left: 1.517586e-02	ci right 1.561180e-02	k: 18933	n:1230000
KS ci ratio: 8.981411e-02	ci left: 1.476876e-03	ci right 1.616545e-03	k: 1901	n:1230000
PCK1   1230000 perm   861 sec   (1429 perm/sec)   p_kst 1.545528e-03   p_cons 1.539268e-02   p_joint 9.878049e-04

Joint ci ratio: 1.033489e-01	ci left: 1.098967e-03	ci right 1.219511e-03	k: 1436	n:1240000
Cons ci ratio: 2.814407e-02	ci left: 1.518720e-02	ci right 1.562152e-02	k: 19100	n:1240000
KS ci ratio: 8.927568e-02	ci left: 1.483099e-03	ci right 1.622472e-03	k: 1924	n:1240000
PCK1   1240000 perm   873 sec   (1421 perm/sec)   p_kst 1.551613e-03   p_cons 1.540323e-02   p_joint 1.158065e-03

Joint ci ratio: 1.029556e-01	ci left: 1.098748e-03	ci right 1.218782e-03	k: 1447	n:1250000
Cons ci ratio: 2.801726e-02	ci left: 1.520313e-02	ci right 1.563592e-02	k: 19273	n:1250000
KS ci ratio: 8.888401e-02	ci left: 1.484531e-03	ci right 1.623395e-03	k: 1941	n:1250000
PCK1   1250000 perm   884 sec   (1414 perm/sec)   p_kst 1.552800e-03   p_cons 1.541840e-02   p_joint 1.157600e-03

Joint ci ratio: 1.027078e-01	ci left: 1.095441e-03	ci right 1.214808e-03	k: 1454	n:1260000
Cons ci ratio: 2.791476e-02	ci left: 1.519438e-02	ci right 1.562531e-02	k: 19415	n:1260000
KS ci ratio: 8.852009e-02	ci left: 1.485166e-03	ci right 1.623491e-03	k: 1957	n:1260000
PCK1   1260000 perm   896 sec   (1406 perm/sec)   p_kst 1.553175e-03   p_cons 1.540873e-02   p_joint 1.153968e-03

Joint ci ratio: 1.022520e-01	ci left: 1.096789e-03	ci right 1.215741e-03	k: 1467	n:1270000
Cons ci ratio: 2.780254e-02	ci left: 1.519750e-02	ci right 1.562676e-02	k: 19572	n:1270000
KS ci ratio: 8.811590e-02	ci left: 1.487332e-03	ci right 1.625193e-03	k: 1975	n:1270000
PCK1   1270000 perm   908 sec   (1398 perm/sec)   p_kst 1.555118e-03   p_cons 1.541102e-02   p_joint 1.155118e-03

Joint ci ratio: 1.020439e-01	ci left: 1.092788e-03	ci right 1.211050e-03	k: 1473	n:1280000
Cons ci ratio: 2.769096e-02	ci left: 1.520135e-02	ci right 1.562897e-02	k: 19730	n:1280000
KS ci ratio: 8.791614e-02	ci left: 1.482589e-03	ci right 1.619683e-03	k: 1984	n:1280000
PCK1   1280000 perm   921 sec   (1390 perm/sec)   p_kst 1.550000e-03   p_cons 1.541406e-02   p_joint 1.150781e-03

Joint ci ratio: 1.031001e-01	ci left: 1.061657e-03	ci right 1.177811e-03	k: 1443	n:1290000
Cons ci ratio: 2.760115e-02	ci left: 1.518282e-02	ci right 1.560851e-02	k: 19859	n:1290000
KS ci ratio: 8.762975e-02	ci left: 1.480952e-03	ci right 1.617426e-03	k: 1997	n:1290000
PCK1   1290000 perm   933 sec   (1383 perm/sec)   p_kst 1.548062e-03   p_cons 1.539457e-02   p_joint 1.118605e-03

Joint ci ratio: 1.031005e-01	ci left: 1.053490e-03	ci right 1.168751e-03	k: 1443	n:1300000
Cons ci ratio: 2.750453e-02	ci left: 1.517298e-02	ci right 1.559688e-02	k: 19999	n:1300000
KS ci ratio: 8.743327e-02	ci left: 1.476331e-03	ci right 1.612059e-03	k: 2006	n:1300000
PCK1   1300000 perm   945 sec   (1376 perm/sec)   p_kst 1.543077e-03   p_cons 1.538385e-02   p_joint 1.110000e-03

Joint ci ratio: 1.026395e-01	ci left: 1.055116e-03	ci right 1.170008e-03	k: 1456	n:1310000
Cons ci ratio: 2.739579e-02	ci left: 1.517769e-02	ci right 1.560002e-02	k: 20158	n:1310000
KS ci ratio: 8.704372e-02	ci left: 1.478502e-03	ci right 1.613793e-03	k: 2024	n:1310000
PCK1   1310000 perm   958 sec   (1368 perm/sec)   p_kst 1.545038e-03   p_cons 1.538779e-02   p_joint 1.111450e-03

Joint ci ratio: 1.020803e-01	ci left: 1.058934e-03	ci right 1.173576e-03	k: 1472	n:1320000
Cons ci ratio: 2.729516e-02	ci left: 1.517482e-02	ci right 1.559549e-02	k: 20307	n:1320000
KS ci ratio: 8.659568e-02	ci left: 1.482865e-03	ci right 1.617822e-03	k: 2045	n:1320000
PCK1   1320000 perm   970 sec   (1361 perm/sec)   p_kst 1.549242e-03   p_cons 1.538409e-02   p_joint 1.115152e-03

Joint ci ratio: 1.024996e-01	ci left: 1.042180e-03	ci right 1.155499e-03	k: 1460	n:1330000
Cons ci ratio: 2.719157e-02	ci left: 1.517647e-02	ci right 1.559557e-02	k: 20462	n:1330000
KS ci ratio: 8.619627e-02	ci left: 1.485693e-03	ci right 1.620252e-03	k: 2064	n:1330000
PCK1   1330000 perm   982 sec   (1354 perm/sec)   p_kst 1.551880e-03   p_cons 1.538496e-02   p_joint 1.097744e-03

Joint ci ratio: 1.021506e-01	ci left: 1.041674e-03	ci right 1.154530e-03	k: 1470	n:1340000
Cons ci ratio: 2.708449e-02	ci left: 1.518329e-02	ci right 1.560090e-02	k: 20624	n:1340000
KS ci ratio: 8.584359e-02	ci left: 1.487020e-03	ci right 1.621120e-03	k: 2081	n:1340000
PCK1   1340000 perm   994 sec   (1347 perm/sec)   p_kst 1.552985e-03   p_cons 1.539104e-02   p_joint 1.097015e-03

Joint ci ratio: 1.017708e-01	ci left: 1.041899e-03	ci right 1.154333e-03	k: 1481	n:1350000
Cons ci ratio: 2.697932e-02	ci left: 1.518927e-02	ci right 1.560540e-02	k: 20785	n:1350000
KS ci ratio: 8.557692e-02	ci left: 1.485428e-03	ci right 1.618947e-03	k: 2094	n:1350000
PCK1   1350000 perm   1007 sec   (1341 perm/sec)   p_kst 1.551111e-03   p_cons 1.539630e-02   p_joint 1.097037e-03

Joint ci ratio: 1.013612e-01	ci left: 1.042837e-03	ci right 1.154893e-03	k: 1493	n:1360000
Cons ci ratio: 2.687146e-02	ci left: 1.519956e-02	ci right 1.561428e-02	k: 20952	n:1360000
KS ci ratio: 8.533299e-02	ci left: 1.483141e-03	ci right 1.616056e-03	k: 2106	n:1360000
PCK1   1360000 perm   1020 sec   (1334 perm/sec)   p_kst 1.548529e-03   p_cons 1.540588e-02   p_joint 1.097794e-03

Joint ci ratio: 1.010574e-01	ci left: 1.041628e-03	ci right 1.153199e-03	k: 1502	n:1370000
Cons ci ratio: 2.678034e-02	ci left: 1.519229e-02	ci right 1.560538e-02	k: 21095	n:1370000
KS ci ratio: 8.511125e-02	ci left: 1.480173e-03	ci right 1.612460e-03	k: 2117	n:1370000
PCK1   1370000 perm   1032 sec   (1327 perm/sec)   p_kst 1.545255e-03   p_cons 1.539781e-02   p_joint 1.096350e-03

Joint ci ratio: 1.007896e-01	ci left: 1.039731e-03	ci right 1.150786e-03	k: 1510	n:1380000
Cons ci ratio: 2.668759e-02	ci left: 1.518801e-02	ci right 1.559953e-02	k: 21242	n:1380000
KS ci ratio: 8.481147e-02	ci left: 1.480085e-03	ci right 1.611876e-03	k: 2132	n:1380000
PCK1   1380000 perm   1045 sec   (1321 perm/sec)   p_kst 1.544928e-03   p_cons 1.539275e-02   p_joint 1.094203e-03

Joint ci ratio: 1.003917e-01	ci left: 1.040667e-03	ci right 1.151357e-03	k: 1522	n:1390000
Cons ci ratio: 2.658065e-02	ci left: 1.520095e-02	ci right 1.561115e-02	k: 21413	n:1390000
KS ci ratio: 8.443613e-02	ci left: 1.482817e-03	ci right 1.614238e-03	k: 2151	n:1390000
PCK1   1390000 perm   1058 sec   (1314 perm/sec)   p_kst 1.547482e-03   p_cons 1.540504e-02   p_joint 1.094964e-03

Joint ci ratio: 1.009578e-01	ci left: 1.021396e-03	ci right 1.130685e-03	k: 1505	n:1400000
Cons ci ratio: 2.648060e-02	ci left: 1.520732e-02	ci right 1.561612e-02	k: 21575	n:1400000
KS ci ratio: 8.410454e-02	ci left: 1.484113e-03	ci right 1.615106e-03	k: 2168	n:1400000
PCK1   1400000 perm   1070 sec   (1308 perm/sec)   p_kst 1.548571e-03   p_cons 1.541071e-02   p_joint 1.075000e-03

Joint ci ratio: 1.007574e-01	ci left: 1.018300e-03	ci right 1.127029e-03	k: 1511	n:1410000
Cons ci ratio: 2.638414e-02	ci left: 1.521078e-02	ci right 1.561816e-02	k: 21733	n:1410000
KS ci ratio: 8.389222e-02	ci left: 1.481224e-03	ci right 1.611617e-03	k: 2179	n:1410000
PCK1   1410000 perm   1083 sec   (1302 perm/sec)   p_kst 1.545390e-03   p_cons 1.541348e-02   p_joint 1.071631e-03

Joint ci ratio: 1.002612e-01	ci left: 1.021426e-03	ci right 1.129921e-03	k: 1526	n:1420000
Cons ci ratio: 2.628506e-02	ci left: 1.521839e-02	ci right 1.562443e-02	k: 21897	n:1420000
KS ci ratio: 8.356697e-02	ci left: 1.482515e-03	ci right 1.612490e-03	k: 2196	n:1420000
PCK1   1420000 perm   1096 sec   (1296 perm/sec)   p_kst 1.546479e-03   p_cons 1.542042e-02   p_joint 1.074648e-03

Joint ci ratio: 1.008250e-01	ci left: 1.002694e-03	ci right 1.109833e-03	k: 1509	n:1430000
Cons ci ratio: 2.618468e-02	ci left: 1.522869e-02	ci right 1.563342e-02	k: 22065	n:1430000
KS ci ratio: 8.318905e-02	ci left: 1.485842e-03	ci right 1.615491e-03	k: 2216	n:1430000
PCK1   1430000 perm   1109 sec   (1289 perm/sec)   p_kst 1.549650e-03   p_cons 1.543007e-02   p_joint 1.055245e-03

Joint ci ratio: 1.004928e-01	ci left: 1.002500e-03	ci right 1.109245e-03	k: 1519	n:1440000
Cons ci ratio: 2.608604e-02	ci left: 1.523815e-02	ci right 1.564158e-02	k: 22232	n:1440000
KS ci ratio: 8.307698e-02	ci left: 1.479603e-03	ci right 1.608526e-03	k: 2222	n:1440000
PCK1   1440000 perm   1122 sec   (1283 perm/sec)   p_kst 1.543056e-03   p_cons 1.543889e-02   p_joint 1.054861e-03

Joint ci ratio: 1.001966e-01	ci left: 1.001638e-03	ci right 1.107958e-03	k: 1528	n:1450000
Cons ci ratio: 2.599321e-02	ci left: 1.524200e-02	ci right 1.564408e-02	k: 22391	n:1450000
KS ci ratio: 8.279812e-02	ci left: 1.479529e-03	ci right 1.607992e-03	k: 2237	n:1450000
PCK1   1450000 perm   1135 sec   (1277 perm/sec)   p_kst 1.542759e-03   p_cons 1.544207e-02   p_joint 1.053793e-03

Joint ci ratio: 1.000660e-01	ci left: 9.974481e-04	ci right 1.103177e-03	k: 1532	n:1460000
Cons ci ratio: 2.590312e-02	ci left: 1.524376e-02	ci right 1.564447e-02	k: 22547	n:1460000
KS ci ratio: 8.261391e-02	ci left: 1.476103e-03	ci right 1.603969e-03	k: 2247	n:1460000
PCK1   1460000 perm   1148 sec   (1271 perm/sec)   p_kst 1.539041e-03   p_cons 1.544315e-02   p_joint 1.049315e-03

Joint ci ratio: 9.974127e-02	ci left: 9.972955e-04	ci right 1.102645e-03	k: 1542	n:1470000
Cons ci ratio: 2.581223e-02	ci left: 1.524752e-02	ci right 1.564691e-02	k: 22706	n:1470000
KS ci ratio: 8.233967e-02	ci left: 1.476055e-03	ci right 1.603473e-03	k: 2262	n:1470000
PCK1   1470000 perm   1162 sec   (1265 perm/sec)   p_kst 1.538776e-03   p_cons 1.544626e-02   p_joint 1.048980e-03

Outputting figure to mutsig2_images.part000000000127/PCK1.11_1905_1470000_0.0015388_0.015446_0.001049.png
                gene_name: PCK1
               theta_stop: 0.100 
                    nperm: 1470000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.0010 
     ci_joint_bounds_left: 0.00100 
    ci_joint_bounds_right: 0.0011 

Current progress: 41 percent done.
PCDHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
Cons ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
PCDHA8   10000 perm   2 sec   (4997 perm/sec)   p_kst 1.514000e-01   p_cons 6.029000e-01   p_joint 2.957000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA8.10_2920_10000_0.1514_0.6029_0.2957.png
                gene_name: PCDHA8
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 42 percent done.
PCDHGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
Cons ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
PCDHGA7   10000 perm   2 sec   (4917 perm/sec)   p_kst 2.714000e-01   p_cons 8.877000e-01   p_joint 4.528000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA7.10_2845_10000_0.2714_0.8877_0.4528.png
                gene_name: PCDHGA7
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
PCDHB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
KS ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
PCDHB14   10000 perm   2 sec   (5402 perm/sec)   p_kst 8.519000e-01   p_cons 9.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB14.9_2401_10000_0.8519_0.9723_1.png
                gene_name: PCDHB14
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
PCDHB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
PCDHB15   10000 perm   2 sec   (4917 perm/sec)   p_kst 8.302000e-01   p_cons 8.790000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB15.9_2368_10000_0.8302_0.879_1.png
                gene_name: PCDHB15
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PCDHB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
PCDHB16   10000 perm   2 sec   (5169 perm/sec)   p_kst 4.105000e-01   p_cons 5.846000e-01   p_joint 7.062000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB16.9_2335_10000_0.4105_0.5846_0.7062.png
                gene_name: PCDHB16
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 48 percent done.
PCDHB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
KS ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
PCDHB9   10000 perm   2 sec   (5202 perm/sec)   p_kst 5.017000e-01   p_cons 6.626000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB9.9_2397_10000_0.5017_0.6626_0.6713.png
                gene_name: PCDHB9
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 49 percent done.
PCDHGA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
Cons ci ratio: 2.146657e-02	ci left: 7.609153e-01	ci right 7.775276e-01	k: 7693	n:10000
KS ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
PCDHGA12   10000 perm   2 sec   (4681 perm/sec)   p_kst 8.960000e-02   p_cons 7.693000e-01   p_joint 2.094000e-01

Joint ci ratio: 6.212888e-02	ci left: 1.608178e-01	ci right 1.711795e-01	k: 3319	n:20000
Cons ci ratio: 1.529883e-02	ci left: 7.605733e-01	ci right 7.723491e-01	k: 15330	n:20000
KS ci ratio: 8.898230e-02	ci left: 8.450079e-02	ci right 9.241933e-02	k: 1768	n:20000
PCDHGA12   20000 perm   5 sec   (4267 perm/sec)   p_kst 8.840000e-02   p_cons 7.665000e-01   p_joint 1.659500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA12.9_2852_20000_0.0884_0.7665_0.16595.png
                gene_name: PCDHGA12
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 51 percent done.
PCDHGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
KS ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
PCDHGB3   10000 perm   2 sec   (5191 perm/sec)   p_kst 2.850000e-01   p_cons 6.624000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB3.9_2834_10000_0.285_0.6624_0.4849.png
                gene_name: PCDHGB3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 52 percent done.
PCDHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
PCDHB1   10000 perm   2 sec   (5167 perm/sec)   p_kst 6.048000e-01   p_cons 5.440000e-01   p_joint 7.040000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB1.8_2461_10000_0.6048_0.544_0.704.png
                gene_name: PCDHB1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 54 percent done.
PCDHB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
Cons ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
KS ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
PCDHB13   10000 perm   2 sec   (5461 perm/sec)   p_kst 2.598000e-01   p_cons 2.480000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
Cons ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
KS ci ratio: 4.779294e-02	ci left: 2.456472e-01	ci right 2.577251e-01	k: 5033	n:20000
PCDHB13   20000 perm   4 sec   (4914 perm/sec)   p_kst 2.516500e-01   p_cons 2.415000e-02   p_joint 4.205000e-02

Joint ci ratio: 1.059128e-01	ci left: 4.134938e-02	ci right 4.600618e-02	k: 1309	n:30000
Cons ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
KS ci ratio: 3.874517e-02	ci left: 2.494459e-01	ci right 2.593351e-01	k: 7631	n:30000
PCDHB13   30000 perm   6 sec   (4694 perm/sec)   p_kst 2.543667e-01   p_cons 2.430000e-02   p_joint 4.363333e-02

Joint ci ratio: 9.881879e-02	ci left: 3.597658e-02	ci right 3.974090e-02	k: 1513	n:40000
Cons ci ratio: 1.203188e-01	ci left: 2.429262e-02	ci right 2.742673e-02	k: 1033	n:40000
KS ci ratio: 3.360750e-02	ci left: 2.495159e-01	ci right 2.580699e-01	k: 10151	n:40000
PCDHB13   40000 perm   9 sec   (4550 perm/sec)   p_kst 2.537750e-01   p_cons 2.582500e-02   p_joint 3.782500e-02

Joint ci ratio: 1.000275e-01	ci left: 2.830744e-02	ci right 3.130748e-02	k: 1489	n:50000
Cons ci ratio: 1.168297e-01	ci left: 2.073210e-02	ci right 2.332381e-02	k: 1100	n:50000
KS ci ratio: 3.017259e-02	ci left: 2.485571e-01	ci right 2.561916e-01	k: 12618	n:50000
PCDHB13   50000 perm   11 sec   (4440 perm/sec)   p_kst 2.523600e-01   p_cons 2.200000e-02   p_joint 2.978000e-02

Joint ci ratio: 9.249199e-02	ci left: 2.772065e-02	ci right 3.042515e-02	k: 1743	n:60000
Cons ci ratio: 1.066176e-01	ci left: 2.085737e-02	ci right 2.322251e-02	k: 1321	n:60000
KS ci ratio: 2.755197e-02	ci left: 2.487786e-01	ci right 2.557454e-01	k: 15135	n:60000
PCDHB13   60000 perm   14 sec   (4347 perm/sec)   p_kst 2.522500e-01   p_cons 2.201667e-02   p_joint 2.905000e-02

Joint ci ratio: 6.921456e-02	ci left: 4.229575e-02	ci right 4.534221e-02	k: 3066	n:70000
Cons ci ratio: 9.656449e-02	ci left: 2.188824e-02	ci right 2.412297e-02	k: 1609	n:70000
KS ci ratio: 2.545869e-02	ci left: 2.497684e-01	ci right 2.562235e-01	k: 17709	n:70000
PCDHB13   70000 perm   16 sec   (4263 perm/sec)   p_kst 2.529857e-01   p_cons 2.298571e-02   p_joint 4.380000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB13.8_2401_70000_0.25299_0.022986_0.0438.png
                gene_name: PCDHB13
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 55 percent done.
PCDHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
PCDHA5   10000 perm   2 sec   (5236 perm/sec)   p_kst 4.314000e-01   p_cons 6.439000e-01   p_joint 8.069000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA5.7_2926_10000_0.4314_0.6439_0.8069.png
                gene_name: PCDHA5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 56 percent done.
PCDHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
Cons ci ratio: 1.190619e-02	ci left: 9.099797e-01	ci right 9.209768e-01	k: 9156	n:10000
KS ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
PCDHA9   10000 perm   2 sec   (4808 perm/sec)   p_kst 2.540000e-02   p_cons 9.156000e-01   p_joint 8.110000e-02

Joint ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
Cons ci ratio: 8.338140e-03	ci left: 9.131417e-01	ci right 9.208366e-01	k: 18341	n:20000
KS ci ratio: 1.688184e-01	ci left: 2.403039e-02	ci right 2.850878e-02	k: 524	n:20000
PCDHA9   20000 perm   5 sec   (4390 perm/sec)   p_kst 2.620000e-02   p_cons 9.170500e-01   p_joint 1.182000e-01

Joint ci ratio: 7.098660e-02	ci left: 8.898196e-02	ci right 9.556391e-02	k: 2767	n:30000
Cons ci ratio: 6.700439e-03	ci left: 9.162961e-01	ci right 9.224891e-01	k: 27583	n:30000
KS ci ratio: 1.390698e-01	ci left: 2.400317e-02	ci right 2.762279e-02	k: 773	n:30000
PCDHA9   30000 perm   7 sec   (4187 perm/sec)   p_kst 2.576667e-02   p_cons 9.194333e-01   p_joint 9.223333e-02

Joint ci ratio: 7.450493e-02	ci left: 6.230845e-02	ci right 6.715497e-02	k: 2588	n:40000
Cons ci ratio: 5.775424e-03	ci left: 9.174252e-01	ci right 9.227637e-01	k: 36805	n:40000
KS ci ratio: 1.234813e-01	ci left: 2.305558e-02	ci right 2.611397e-02	k: 982	n:40000
PCDHA9   40000 perm   10 sec   (4063 perm/sec)   p_kst 2.455000e-02   p_cons 9.201250e-01   p_joint 6.470000e-02

Joint ci ratio: 6.752776e-02	ci left: 6.100389e-02	ci right 6.528700e-02	k: 3156	n:50000
Cons ci ratio: 5.126311e-03	ci left: 9.188444e-01	ci right 9.235865e-01	k: 46062	n:50000
KS ci ratio: 1.092547e-01	ci left: 2.372702e-02	ci right 2.648849e-02	k: 1254	n:50000
PCDHA9   50000 perm   13 sec   (3983 perm/sec)   p_kst 2.508000e-02   p_cons 9.212400e-01   p_joint 6.312000e-02

Joint ci ratio: 5.794626e-02	ci left: 6.880948e-02	ci right 7.293215e-02	k: 4251	n:60000
Cons ci ratio: 4.880560e-03	ci left: 9.126557e-01	ci right 9.171374e-01	k: 54895	n:60000
KS ci ratio: 9.960000e-02	ci left: 2.391179e-02	ci right 2.643442e-02	k: 1509	n:60000
PCDHA9   60000 perm   15 sec   (3901 perm/sec)   p_kst 2.515000e-02   p_cons 9.149167e-01   p_joint 7.085000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHA9.7_3004_60000_0.02515_0.91492_0.07085.png
                gene_name: PCDHA9
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 58 percent done.
PCMTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
Cons ci ratio: 1.827391e-02	ci left: 8.138514e-01	ci right 8.289609e-01	k: 8215	n:10000
KS ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
PCMTD1   10000 perm   2 sec   (5369 perm/sec)   p_kst 5.769000e-01   p_cons 8.215000e-01   p_joint 7.318000e-01

Outputting figure to mutsig2_images.part000000000127/PCMTD1.7_1094_10000_0.5769_0.8215_0.7318.png
                gene_name: PCMTD1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 59 percent done.
PCOLCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
Cons ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
KS ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
PCOLCE2   10000 perm   2 sec   (5289 perm/sec)   p_kst 7.283000e-01   p_cons 4.284000e-01   p_joint 8.040000e-01

Outputting figure to mutsig2_images.part000000000127/PCOLCE2.7_1284_10000_0.7283_0.4284_0.804.png
                gene_name: PCOLCE2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 61 percent done.
PCDHAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
Cons ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
PCDHAC1   10000 perm   2 sec   (5402 perm/sec)   p_kst 3.762000e-01   p_cons 5.555000e-01   p_joint 5.720000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC1.6_2932_10000_0.3762_0.5555_0.572.png
                gene_name: PCDHAC1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 62 percent done.
PCDHGB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
PCDHGB5   10000 perm   2 sec   (5084 perm/sec)   p_kst 7.210000e-02   p_cons 7.396000e-01   p_joint 1.808000e-01

Joint ci ratio: 5.508383e-02	ci left: 1.964543e-01	ci right 2.076324e-01	k: 4040	n:20000
Cons ci ratio: 1.685716e-02	ci left: 7.237890e-01	ci right 7.361441e-01	k: 14600	n:20000
KS ci ratio: 1.021334e-01	ci left: 6.508590e-02	ci right 7.214014e-02	k: 1371	n:20000
PCDHGB5   20000 perm   4 sec   (4604 perm/sec)   p_kst 6.855000e-02   p_cons 7.300000e-01   p_joint 2.020000e-01

Joint ci ratio: 5.193349e-02	ci left: 1.554392e-01	ci right 1.637602e-01	k: 4787	n:30000
Cons ci ratio: 1.343481e-02	ci left: 7.344266e-01	ci right 7.443937e-01	k: 22183	n:30000
KS ci ratio: 8.076819e-02	ci left: 6.985214e-02	ci right 7.576424e-02	k: 2183	n:30000
PCDHGB5   30000 perm   7 sec   (4408 perm/sec)   p_kst 7.276667e-02   p_cons 7.394333e-01   p_joint 1.595667e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB5.6_2847_30000_0.072767_0.73943_0.15957.png
                gene_name: PCDHGB5
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
PCF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
KS ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
PCF11   10000 perm   2 sec   (4735 perm/sec)   p_kst 1.778000e-01   p_cons 4.052000e-01   p_joint 1.802000e-01

Outputting figure to mutsig2_images.part000000000127/PCF11.6_4732_10000_0.1778_0.4052_0.1802.png
                gene_name: PCF11
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 65 percent done.
PCOLCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
Cons ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
PCOLCE   10000 perm   2 sec   (5625 perm/sec)   p_kst 2.953000e-01   p_cons 8.820000e-01   p_joint 4.771000e-01

Outputting figure to mutsig2_images.part000000000127/PCOLCE.6_1386_10000_0.2953_0.882_0.4771.png
                gene_name: PCOLCE
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 66 percent done.
PCDHGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
Cons ci ratio: 3.705782e-02	ci left: 5.181586e-01	ci right 5.378251e-01	k: 5280	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
PCDHGA11   10000 perm   2 sec   (5364 perm/sec)   p_kst 6.510000e-02   p_cons 5.280000e-01   p_joint 1.133000e-01

Joint ci ratio: 7.172118e-02	ci left: 1.252697e-01	ci right 1.346382e-01	k: 2598	n:20000
Cons ci ratio: 2.638229e-02	ci left: 5.177007e-01	ci right 5.315921e-01	k: 10493	n:20000
KS ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
PCDHGA11   20000 perm   4 sec   (4828 perm/sec)   p_kst 6.710000e-02   p_cons 5.246500e-01   p_joint 1.299000e-01

Joint ci ratio: 5.410116e-02	ci left: 1.448891e-01	ci right 1.529790e-01	k: 4467	n:30000
Cons ci ratio: 2.066991e-02	ci left: 5.395444e-01	ci right 5.508468e-01	k: 16356	n:30000
KS ci ratio: 8.497675e-02	ci left: 6.341196e-02	ci right 6.907239e-02	k: 1986	n:30000
PCDHGA11   30000 perm   6 sec   (4622 perm/sec)   p_kst 6.620000e-02   p_cons 5.452000e-01   p_joint 1.489000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA11.5_2905_30000_0.0662_0.5452_0.1489.png
                gene_name: PCDHGA11
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 68 percent done.
PCDHGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
PCDHGA9   10000 perm   2 sec   (5211 perm/sec)   p_kst 1.492000e-01   p_cons 5.894000e-01   p_joint 3.000000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA9.5_2877_10000_0.1492_0.5894_0.3.png
                gene_name: PCDHGA9
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 69 percent done.
PCDHGB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
KS ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
PCDHGB6   10000 perm   2 sec   (5074 perm/sec)   p_kst 2.915000e-01   p_cons 4.772000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB6.5_2854_10000_0.2915_0.4772_0.4808.png
                gene_name: PCDHGB6
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 70 percent done.
PCDHGB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.454048e-03	ci left: 9.782366e-01	ci right 9.836781e-01	k: 9811	n:10000
KS ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
PCDHGB7   10000 perm   2 sec   (5337 perm/sec)   p_kst 7.007000e-01   p_cons 9.811000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGB7.5_2818_10000_0.7007_0.9811_1.png
                gene_name: PCDHGB7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PCDHGC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
Cons ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
KS ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
PCDHGC4   10000 perm   2 sec   (5292 perm/sec)   p_kst 5.430000e-02   p_cons 2.698000e-01   p_joint 1.169000e-01

Joint ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
Cons ci ratio: 4.530135e-02	ci left: 2.661888e-01	ci right 2.785774e-01	k: 5447	n:20000
KS ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
PCDHGC4   20000 perm   4 sec   (4769 perm/sec)   p_kst 5.145000e-02   p_cons 2.723500e-01   p_joint 7.175000e-02

Joint ci ratio: 7.544047e-02	ci left: 7.944335e-02	ci right 8.570443e-02	k: 2476	n:30000
Cons ci ratio: 3.612473e-02	ci left: 2.767471e-01	ci right 2.869619e-01	k: 8455	n:30000
KS ci ratio: 9.913765e-02	ci left: 4.707254e-02	ci right 5.201516e-02	k: 1485	n:30000
PCDHGC4   30000 perm   7 sec   (4551 perm/sec)   p_kst 4.950000e-02   p_cons 2.818333e-01   p_joint 8.253333e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGC4.5_3005_30000_0.0495_0.28183_0.082533.png
                gene_name: PCDHGC4
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.086 

Current progress: 73 percent done.
PCDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
Cons ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
PCDP1   10000 perm   2 sec   (5438 perm/sec)   p_kst 1.224000e-01   p_cons 5.091000e-01   p_joint 3.162000e-01

Joint ci ratio: 4.453673e-02	ci left: 2.729406e-01	ci right 2.854237e-01	k: 5583	n:20000
Cons ci ratio: 2.723296e-02	ci left: 5.018457e-01	ci right 5.157517e-01	k: 10176	n:20000
KS ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
PCDP1   20000 perm   4 sec   (4895 perm/sec)   p_kst 1.170000e-01   p_cons 5.088000e-01   p_joint 2.791500e-01

Outputting figure to mutsig2_images.part000000000127/PCDP1.5_1729_20000_0.117_0.5088_0.27915.png
                gene_name: PCDP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 75 percent done.
PCNXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
KS ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
PCNXL3   10000 perm   2 sec   (4353 perm/sec)   p_kst 5.796000e-01   p_cons 7.668000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000127/PCNXL3.5_6245_10000_0.5796_0.7668_0.6995.png
                gene_name: PCNXL3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 76 percent done.
PCSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 9.842379e-02	ci left: 1.301213e-01	ci right 1.436909e-01	k: 1368	n:10000
PCSK2   10000 perm   2 sec   (5397 perm/sec)   p_kst 1.368000e-01   p_cons 2.810000e-02   p_joint 6.370000e-02

Joint ci ratio: 9.123533e-02	ci left: 8.063194e-02	ci right 8.838936e-02	k: 1689	n:20000
Cons ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
KS ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
PCSK2   20000 perm   4 sec   (4895 perm/sec)   p_kst 1.360000e-01   p_cons 2.875000e-02   p_joint 8.445000e-02

Joint ci ratio: 6.004308e-02	ci left: 1.206523e-01	ci right 1.281540e-01	k: 3731	n:30000
Cons ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
KS ci ratio: 5.685035e-02	ci left: 1.328972e-01	ci right 1.407066e-01	k: 4103	n:30000
PCSK2   30000 perm   6 sec   (4710 perm/sec)   p_kst 1.367667e-01   p_cons 2.940000e-02   p_joint 1.243667e-01

Joint ci ratio: 6.879504e-02	ci left: 7.248644e-02	ci right 7.767545e-02	k: 3002	n:40000
Cons ci ratio: 1.105968e-01	ci left: 2.876350e-02	ci right 3.215512e-02	k: 1217	n:40000
KS ci ratio: 4.910930e-02	ci left: 1.340154e-01	ci right 1.407873e-01	k: 5495	n:40000
PCSK2   40000 perm   9 sec   (4594 perm/sec)   p_kst 1.373750e-01   p_cons 3.042500e-02   p_joint 7.505000e-02

Joint ci ratio: 6.380043e-02	ci left: 6.795592e-02	ci right 7.245413e-02	k: 3509	n:50000
Cons ci ratio: 9.784898e-02	ci left: 2.957621e-02	ci right 3.263855e-02	k: 1554	n:50000
KS ci ratio: 4.382498e-02	ci left: 1.349087e-01	ci right 1.409734e-01	k: 6896	n:50000
PCSK2   50000 perm   11 sec   (4499 perm/sec)   p_kst 1.379200e-01   p_cons 3.108000e-02   p_joint 7.018000e-02

Outputting figure to mutsig2_images.part000000000127/PCSK2.5_1965_50000_0.13792_0.03108_0.07018.png
                gene_name: PCSK2
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 77 percent done.
PCSK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
PCSK6   10000 perm   2 sec   (4954 perm/sec)   p_kst 3.619000e-01   p_cons 4.005000e-01   p_joint 5.283000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK6.5_3475_10000_0.3619_0.4005_0.5283.png
                gene_name: PCSK6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 79 percent done.
PCDHAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
Cons ci ratio: 6.905540e-02	ci left: 2.352124e-01	ci right 2.521372e-01	k: 2436	n:10000
KS ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
PCDHAC2   10000 perm   2 sec   (5233 perm/sec)   p_kst 9.042000e-01   p_cons 2.436000e-01   p_joint 7.638000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC2.4_3128_10000_0.9042_0.2436_0.7638.png
                gene_name: PCDHAC2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 80 percent done.
PCDHGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
Cons ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
PCDHGA10   10000 perm   2 sec   (5121 perm/sec)   p_kst 5.000000e-01   p_cons 8.679000e-01   p_joint 6.953000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA10.4_2943_10000_0.5_0.8679_0.6953.png
                gene_name: PCDHGA10
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 82 percent done.
PCDHGC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
KS ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
PCDHGC3   10000 perm   2 sec   (5119 perm/sec)   p_kst 4.056000e-01   p_cons 2.387000e-01   p_joint 3.915000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC3.4_2983_10000_0.4056_0.2387_0.3915.png
                gene_name: PCDHGC3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 83 percent done.
PCSK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
PCSK7   10000 perm   2 sec   (5445 perm/sec)   p_kst 3.658000e-01   p_cons 3.600000e-02   p_joint 2.211000e-01

Joint ci ratio: 5.893157e-02	ci left: 1.757845e-01	ci right 1.865084e-01	k: 3622	n:20000
Cons ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
KS ci ratio: 3.658426e-02	ci left: 3.579743e-01	ci right 3.713651e-01	k: 7293	n:20000
PCSK7   20000 perm   4 sec   (4916 perm/sec)   p_kst 3.646500e-01   p_cons 3.300000e-02   p_joint 1.811000e-01

Joint ci ratio: 6.094161e-02	ci left: 1.174942e-01	ci right 1.249127e-01	k: 3635	n:30000
Cons ci ratio: 1.233510e-01	ci left: 3.055447e-02	ci right 3.460338e-02	k: 976	n:30000
KS ci ratio: 2.976588e-02	ci left: 3.608446e-01	ci right 3.717813e-01	k: 10989	n:30000
PCSK7   30000 perm   6 sec   (4708 perm/sec)   p_kst 3.663000e-01   p_cons 3.253333e-02   p_joint 1.211667e-01

Joint ci ratio: 5.618934e-02	ci left: 1.054188e-01	ci right 1.115382e-01	k: 4338	n:40000
Cons ci ratio: 1.019386e-01	ci left: 3.382985e-02	ci right 3.748796e-02	k: 1425	n:40000
KS ci ratio: 2.536981e-02	ci left: 3.690057e-01	ci right 3.785127e-01	k: 14950	n:40000
PCSK7   40000 perm   9 sec   (4568 perm/sec)   p_kst 3.737500e-01   p_cons 3.562500e-02   p_joint 1.084500e-01

Joint ci ratio: 5.449534e-02	ci left: 9.121862e-02	ci right 9.634865e-02	k: 4688	n:50000
Cons ci ratio: 9.076841e-02	ci left: 3.432542e-02	ci right 3.760874e-02	k: 1797	n:50000
KS ci ratio: 2.271933e-02	ci left: 3.689382e-01	ci right 3.774366e-01	k: 18659	n:50000
PCSK7   50000 perm   11 sec   (4453 perm/sec)   p_kst 3.731800e-01   p_cons 3.594000e-02   p_joint 9.376000e-02

Outputting figure to mutsig2_images.part000000000127/PCSK7.4_2418_50000_0.37318_0.03594_0.09376.png
                gene_name: PCSK7
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.096 

Current progress: 85 percent done.
PCDHGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 3.138021e-02	ci left: 5.997569e-01	ci right 6.189793e-01	k: 6094	n:10000
PCDHGB4   10000 perm   2 sec   (5525 perm/sec)   p_kst 6.094000e-01   p_cons 4.310000e-02   p_joint 1.351000e-01

Joint ci ratio: 6.273022e-02	ci left: 1.582014e-01	ci right 1.684967e-01	k: 3266	n:20000
Cons ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
KS ci ratio: 2.218332e-02	ci left: 6.027483e-01	ci right 6.163198e-01	k: 12191	n:20000
PCDHGB4   20000 perm   4 sec   (4927 perm/sec)   p_kst 6.095500e-01   p_cons 3.930000e-02   p_joint 1.633000e-01

Joint ci ratio: 6.104673e-02	ci left: 1.171324e-01	ci right 1.245412e-01	k: 3624	n:30000
Cons ci ratio: 1.083124e-01	ci left: 3.956314e-02	ci right 4.412613e-02	k: 1254	n:30000
KS ci ratio: 1.821900e-02	ci left: 6.012124e-01	ci right 6.123002e-01	k: 18203	n:30000
PCDHGB4   30000 perm   6 sec   (4714 perm/sec)   p_kst 6.067667e-01   p_cons 4.180000e-02   p_joint 1.208000e-01

Joint ci ratio: 4.976202e-02	ci left: 1.309479e-01	ci right 1.376553e-01	k: 5371	n:40000
Cons ci ratio: 9.419397e-02	ci left: 3.954190e-02	ci right 4.347501e-02	k: 1659	n:40000
KS ci ratio: 1.579121e-02	ci left: 6.015672e-01	ci right 6.111674e-01	k: 24255	n:40000
PCDHGB4   40000 perm   9 sec   (4576 perm/sec)   p_kst 6.063750e-01   p_cons 4.147500e-02   p_joint 1.342750e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB4.3_2801_40000_0.60637_0.041475_0.13428.png
                gene_name: PCDHGB4
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 86 percent done.
PCGF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
Cons ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
PCGF5   10000 perm   2 sec   (6650 perm/sec)   p_kst 3.330000e-01   p_cons 5.300000e-03   p_joint 1.470000e-02

Joint ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
Cons ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
KS ci ratio: 3.937113e-02	ci left: 3.248265e-01	ci right 3.379226e-01	k: 6627	n:20000
PCGF5   20000 perm   3 sec   (5872 perm/sec)   p_kst 3.313500e-01   p_cons 5.700000e-03   p_joint 2.745000e-02

Joint ci ratio: 9.755917e-02	ci left: 4.857001e-02	ci right 5.358405e-02	k: 1531	n:30000
Cons ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
KS ci ratio: 3.237504e-02	ci left: 3.229199e-01	ci right 3.335800e-01	k: 9847	n:30000
PCGF5   30000 perm   5 sec   (5579 perm/sec)   p_kst 3.282333e-01   p_cons 5.966667e-03   p_joint 5.103333e-02

Joint ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
Cons ci ratio: 2.442117e-01	ci left: 5.618552e-03	ci right 7.204386e-03	k: 255	n:40000
KS ci ratio: 2.808483e-02	ci left: 3.229011e-01	ci right 3.321240e-01	k: 13100	n:40000
PCGF5   40000 perm   7 sec   (5390 perm/sec)   p_kst 3.275000e-01   p_cons 6.375000e-03   p_joint 3.185000e-02

Joint ci ratio: 9.477844e-02	ci left: 3.150999e-02	ci right 3.466452e-02	k: 1653	n:50000
Cons ci ratio: 2.112411e-01	ci left: 6.117362e-03	ci right 7.580775e-03	k: 341	n:50000
KS ci ratio: 2.524841e-02	ci left: 3.211540e-01	ci right 3.293863e-01	k: 16263	n:50000
PCGF5   50000 perm   10 sec   (5236 perm/sec)   p_kst 3.252600e-01   p_cons 6.820000e-03   p_joint 3.306000e-02

Joint ci ratio: 8.715385e-02	ci left: 3.119334e-02	ci right 3.405210e-02	k: 1956	n:60000
Cons ci ratio: 1.924588e-01	ci left: 6.205638e-03	ci right 7.542730e-03	k: 411	n:60000
KS ci ratio: 2.305537e-02	ci left: 3.213854e-01	ci right 3.288982e-01	k: 19508	n:60000
PCGF5   60000 perm   12 sec   (5105 perm/sec)   p_kst 3.251333e-01   p_cons 6.850000e-03   p_joint 3.260000e-02

Joint ci ratio: 6.470853e-02	ci left: 4.820008e-02	ci right 5.143737e-02	k: 3486	n:70000
Cons ci ratio: 1.817708e-01	ci left: 5.999905e-03	ci right 7.212966e-03	k: 461	n:70000
KS ci ratio: 2.133228e-02	ci left: 3.219293e-01	ci right 3.288851e-01	k: 22778	n:70000
PCGF5   70000 perm   14 sec   (4992 perm/sec)   p_kst 3.254000e-01   p_cons 6.585714e-03   p_joint 4.980000e-02

Joint ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
Cons ci ratio: 1.678060e-01	ci left: 6.206280e-03	ci right 7.354926e-03	k: 541	n:80000
KS ci ratio: 1.993813e-02	ci left: 3.225150e-01	ci right 3.290226e-01	k: 26061	n:80000
PCGF5   80000 perm   16 sec   (4884 perm/sec)   p_kst 3.257625e-01   p_cons 6.762500e-03   p_joint 1.926250e-02

Joint ci ratio: 9.319809e-02	ci left: 1.837857e-02	ci right 2.018594e-02	k: 1734	n:90000
Cons ci ratio: 1.581765e-01	ci left: 6.241458e-03	ci right 7.324032e-03	k: 609	n:90000
KS ci ratio: 1.873515e-02	ci left: 3.241680e-01	ci right 3.303098e-01	k: 29451	n:90000
PCGF5   90000 perm   19 sec   (4781 perm/sec)   p_kst 3.272333e-01   p_cons 6.766667e-03   p_joint 1.926667e-02

Joint ci ratio: 8.824711e-02	ci left: 1.849540e-02	ci right 2.021264e-02	k: 1934	n:100000
Cons ci ratio: 1.493707e-01	ci left: 6.328876e-03	ci right 7.360041e-03	k: 683	n:100000
KS ci ratio: 1.777875e-02	ci left: 3.242022e-01	ci right 3.300278e-01	k: 32711	n:100000
PCGF5   100000 perm   21 sec   (4686 perm/sec)   p_kst 3.271100e-01   p_cons 6.830000e-03   p_joint 1.934000e-02

Joint ci ratio: 5.392551e-02	ci left: 4.459897e-02	ci right 4.707959e-02	k: 5041	n:110000
Cons ci ratio: 1.435183e-01	ci left: 6.252704e-03	ci right 7.228121e-03	k: 740	n:110000
KS ci ratio: 1.693501e-02	ci left: 3.247630e-01	ci right 3.303189e-01	k: 36029	n:110000
PCGF5   110000 perm   24 sec   (4589 perm/sec)   p_kst 3.275364e-01   p_cons 6.727273e-03   p_joint 4.582727e-02

Joint ci ratio: 8.041714e-02	ci left: 1.863526e-02	ci right 2.020476e-02	k: 2329	n:120000
Cons ci ratio: 1.383911e-01	ci left: 6.181841e-03	ci right 7.108910e-03	k: 796	n:120000
KS ci ratio: 1.622123e-02	ci left: 3.246868e-01	ci right 3.300049e-01	k: 39281	n:120000
PCGF5   120000 perm   27 sec   (4507 perm/sec)   p_kst 3.273417e-01   p_cons 6.633333e-03   p_joint 1.940833e-02

Joint ci ratio: 5.907415e-02	ci left: 3.179288e-02	ci right 3.373573e-02	k: 4258	n:130000
Cons ci ratio: 1.329167e-01	ci left: 6.204217e-03	ci right 7.094927e-03	k: 863	n:130000
KS ci ratio: 1.558907e-02	ci left: 3.246726e-01	ci right 3.297813e-01	k: 42539	n:130000
PCGF5   130000 perm   29 sec   (4429 perm/sec)   p_kst 3.272231e-01   p_cons 6.638462e-03   p_joint 3.275385e-02

Joint ci ratio: 8.023370e-02	ci left: 1.609121e-02	ci right 1.744319e-02	k: 2346	n:140000
Cons ci ratio: 1.274259e-01	ci left: 6.286259e-03	ci right 7.148648e-03	k: 939	n:140000
KS ci ratio: 1.503086e-02	ci left: 3.245070e-01	ci right 3.294287e-01	k: 45775	n:140000
PCGF5   140000 perm   32 sec   (4353 perm/sec)   p_kst 3.269643e-01   p_cons 6.707143e-03   p_joint 1.675714e-02

Joint ci ratio: 7.764897e-02	ci left: 1.605753e-02	ci right 1.736125e-02	k: 2505	n:150000
Cons ci ratio: 1.234228e-01	ci left: 6.267537e-03	ci right 7.098371e-03	k: 1001	n:150000
KS ci ratio: 1.451871e-02	ci left: 3.246659e-01	ci right 3.294208e-01	k: 49056	n:150000
PCGF5   150000 perm   35 sec   (4280 perm/sec)   p_kst 3.270400e-01   p_cons 6.673333e-03   p_joint 1.670000e-02

Joint ci ratio: 7.630980e-02	ci left: 1.560547e-02	ci right 1.684965e-02	k: 2595	n:160000
Cons ci ratio: 1.199450e-01	ci left: 6.233335e-03	ci right 7.034700e-03	k: 1060	n:160000
KS ci ratio: 1.406157e-02	ci left: 3.246203e-01	ci right 3.292235e-01	k: 52307	n:160000
PCGF5   160000 perm   38 sec   (4211 perm/sec)   p_kst 3.269187e-01   p_cons 6.625000e-03   p_joint 1.621875e-02

Joint ci ratio: 7.679870e-02	ci left: 1.451409e-02	ci right 1.567900e-02	k: 2565	n:170000
Cons ci ratio: 1.163800e-01	ci left: 6.243431e-03	ci right 7.020596e-03	k: 1126	n:170000
KS ci ratio: 1.365381e-02	ci left: 3.243003e-01	ci right 3.287645e-01	k: 55510	n:170000
PCGF5   170000 perm   41 sec   (4143 perm/sec)   p_kst 3.265294e-01   p_cons 6.623529e-03   p_joint 1.508824e-02

Joint ci ratio: 7.464806e-02	ci left: 1.452531e-02	ci right 1.565705e-02	k: 2715	n:180000
Cons ci ratio: 1.135954e-01	ci left: 6.198729e-03	ci right 6.950629e-03	k: 1182	n:180000
KS ci ratio: 1.326834e-02	ci left: 3.243892e-01	ci right 3.287275e-01	k: 58780	n:180000
PCGF5   180000 perm   44 sec   (4077 perm/sec)   p_kst 3.265556e-01   p_cons 6.566667e-03   p_joint 1.508333e-02

Joint ci ratio: 7.255296e-02	ci left: 1.458227e-02	ci right 1.568522e-02	k: 2874	n:190000
Cons ci ratio: 1.097163e-01	ci left: 6.307375e-03	ci right 7.044639e-03	k: 1267	n:190000
KS ci ratio: 1.290775e-02	ci left: 3.246752e-01	ci right 3.288985e-01	k: 62089	n:190000
PCGF5   190000 perm   47 sec   (4014 perm/sec)   p_kst 3.267842e-01   p_cons 6.668421e-03   p_joint 1.512632e-02

Joint ci ratio: 7.067222e-02	ci left: 1.461429e-02	ci right 1.568983e-02	k: 3029	n:200000
Cons ci ratio: 1.072516e-01	ci left: 6.278997e-03	ci right 6.995415e-03	k: 1326	n:200000
KS ci ratio: 1.255892e-02	ci left: 3.254982e-01	ci right 3.296168e-01	k: 65511	n:200000
PCGF5   200000 perm   51 sec   (3953 perm/sec)   p_kst 3.275550e-01   p_cons 6.630000e-03   p_joint 1.514500e-02

Joint ci ratio: 5.053267e-02	ci left: 2.715274e-02	ci right 2.856509e-02	k: 5849	n:210000
Cons ci ratio: 1.040801e-01	ci left: 6.360168e-03	ci right 7.063076e-03	k: 1408	n:210000
KS ci ratio: 1.226203e-02	ci left: 3.253407e-01	ci right 3.293593e-01	k: 68743	n:210000
PCGF5   210000 perm   54 sec   (3892 perm/sec)   p_kst 3.273476e-01   p_cons 6.704762e-03   p_joint 2.785238e-02

Joint ci ratio: 5.682486e-02	ci left: 2.057073e-02	ci right 2.177830e-02	k: 4657	n:220000
Cons ci ratio: 1.015866e-01	ci left: 6.381072e-03	ci right 7.068385e-03	k: 1478	n:220000
KS ci ratio: 1.198030e-02	ci left: 3.253801e-01	ci right 3.293063e-01	k: 72015	n:220000
PCGF5   220000 perm   57 sec   (3834 perm/sec)   p_kst 3.273409e-01   p_cons 6.718182e-03   p_joint 2.116818e-02

Joint ci ratio: 4.827457e-02	ci left: 2.719636e-02	ci right 2.854600e-02	k: 6409	n:230000
Cons ci ratio: 9.913528e-02	ci left: 6.417303e-03	ci right 7.090870e-03	k: 1552	n:230000
KS ci ratio: 1.171412e-02	ci left: 3.255300e-01	ci right 3.293700e-01	k: 75313	n:230000
PCGF5   230000 perm   61 sec   (3777 perm/sec)   p_kst 3.274478e-01   p_cons 6.747826e-03   p_joint 2.786522e-02

Outputting figure to mutsig2_images.part000000000127/PCGF5.3_807_230000_0.32745_0.0067478_0.027865.png
                gene_name: PCGF5
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0067 
      ci_cons_bounds_left: 0.0064 
     ci_cons_bounds_right: 0.0071 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 87 percent done.
PCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.443746e-02	ci left: 8.740836e-01	ci right 8.868938e-01	k: 8806	n:10000
KS ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
PCK2   10000 perm   2 sec   (5870 perm/sec)   p_kst 4.830000e-02   p_cons 8.806000e-01   p_joint 6.940000e-02

Joint ci ratio: 8.939873e-02	ci left: 8.376601e-02	ci right 9.165433e-02	k: 1753	n:20000
Cons ci ratio: 1.028523e-02	ci left: 8.744000e-01	ci right 8.834895e-01	k: 17580	n:20000
KS ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
PCK2   20000 perm   4 sec   (5253 perm/sec)   p_kst 5.040000e-02   p_cons 8.790000e-01   p_joint 8.765000e-02

Joint ci ratio: 7.599359e-02	ci left: 7.836242e-02	ci right 8.458558e-02	k: 2443	n:30000
Cons ci ratio: 8.066525e-03	ci left: 8.836674e-01	ci right 8.908574e-01	k: 26619	n:30000
KS ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
PCK2   30000 perm   6 sec   (5014 perm/sec)   p_kst 4.986667e-02   p_cons 8.873000e-01   p_joint 8.143333e-02

Outputting figure to mutsig2_images.part000000000127/PCK2.3_2055_30000_0.049867_0.8873_0.081433.png
                gene_name: PCK2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.085 

Current progress: 89 percent done.
PCSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
KS ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
PCSK1   10000 perm   2 sec   (5768 perm/sec)   p_kst 9.730000e-02   p_cons 3.584000e-01   p_joint 1.446000e-01

Joint ci ratio: 7.793027e-02	ci left: 1.079067e-01	ci right 1.167064e-01	k: 2245	n:20000
Cons ci ratio: 3.731784e-02	ci left: 3.488626e-01	ci right 3.621795e-01	k: 7110	n:20000
KS ci ratio: 8.612820e-02	ci left: 8.979365e-02	ci right 9.792487e-02	k: 1876	n:20000
PCSK1   20000 perm   4 sec   (5147 perm/sec)   p_kst 9.380000e-02   p_cons 3.555000e-01   p_joint 1.122500e-01

Outputting figure to mutsig2_images.part000000000127/PCSK1.3_2361_20000_0.0938_0.3555_0.11225.png
                gene_name: PCSK1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 90 percent done.
PCSK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
Cons ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
PCSK4   10000 perm   2 sec   (5743 perm/sec)   p_kst 7.280000e-02   p_cons 8.901000e-01   p_joint 2.148000e-01

Joint ci ratio: 5.768113e-02	ci left: 1.821608e-01	ci right 1.930302e-01	k: 3751	n:20000
Cons ci ratio: 9.743510e-03	ci left: 8.856327e-01	ci right 8.943536e-01	k: 17801	n:20000
KS ci ratio: 9.884653e-02	ci left: 6.928546e-02	ci right 7.653930e-02	k: 1457	n:20000
PCSK4   20000 perm   4 sec   (5153 perm/sec)   p_kst 7.285000e-02   p_cons 8.900500e-01   p_joint 1.875500e-01

Outputting figure to mutsig2_images.part000000000127/PCSK4.3_2328_20000_0.07285_0.89005_0.18755.png
                gene_name: PCSK4
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 92 percent done.
PCYT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
Cons ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
KS ci ratio: 1.901722e-02	ci left: 8.016636e-01	ci right 8.171557e-01	k: 8095	n:10000
PCYT1B   10000 perm   2 sec   (6161 perm/sec)   p_kst 8.095000e-01   p_cons 2.256000e-01   p_joint 7.052000e-01

Outputting figure to mutsig2_images.part000000000127/PCYT1B.3_1246_10000_0.8095_0.2256_0.7052.png
                gene_name: PCYT1B
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 93 percent done.
PCDHGC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
Cons ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
KS ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
PCDHGC5   10000 perm   2 sec   (5788 perm/sec)   p_kst 8.702000e-01   p_cons 5.858000e-01   p_joint 8.351000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC5.2_3026_10000_0.8702_0.5858_0.8351.png
                gene_name: PCDHGC5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 94 percent done.
PCGF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
Cons ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
PCGF2   10000 perm   1 sec   (6978 perm/sec)   p_kst 9.400000e-03   p_cons 7.346000e-01   p_joint 4.580000e-02

Joint ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
Cons ci ratio: 1.614827e-02	ci left: 7.405113e-01	ci right 7.526169e-01	k: 14932	n:20000
KS ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
PCGF2   20000 perm   3 sec   (6145 perm/sec)   p_kst 1.125000e-02   p_cons 7.466000e-01   p_joint 2.300000e-02

Joint ci ratio: 1.160583e-01	ci left: 3.450344e-02	ci right 3.878689e-02	k: 1098	n:30000
Cons ci ratio: 1.321409e-02	ci left: 7.407991e-01	ci right 7.506866e-01	k: 22373	n:30000
KS ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
PCGF2   30000 perm   5 sec   (5788 perm/sec)   p_kst 1.166667e-02   p_cons 7.457667e-01   p_joint 3.660000e-02

Joint ci ratio: 7.592585e-02	ci left: 6.009805e-02	ci right 6.486571e-02	k: 2498	n:40000
Cons ci ratio: 1.149481e-02	ci left: 7.397684e-01	ci right 7.483461e-01	k: 29763	n:40000
KS ci ratio: 1.841603e-01	ci left: 1.016795e-02	ci right 1.225392e-02	k: 447	n:40000
PCGF2   40000 perm   7 sec   (5602 perm/sec)   p_kst 1.117500e-02   p_cons 7.440750e-01   p_joint 6.245000e-02

Joint ci ratio: 7.766491e-02	ci left: 4.659405e-02	ci right 5.037859e-02	k: 2423	n:50000
Cons ci ratio: 1.025199e-02	ci left: 7.413162e-01	ci right 7.489753e-01	k: 37258	n:50000
KS ci ratio: 1.685656e-01	ci left: 9.797512e-03	ci right 1.161997e-02	k: 534	n:50000
PCGF2   50000 perm   9 sec   (5319 perm/sec)   p_kst 1.068000e-02   p_cons 7.451600e-01   p_joint 4.846000e-02

Joint ci ratio: 6.129439e-02	ci left: 6.185726e-02	ci right 6.578506e-02	k: 3828	n:60000
Cons ci ratio: 9.342572e-03	ci left: 7.423126e-01	ci right 7.492969e-01	k: 44749	n:60000
KS ci ratio: 1.527999e-01	ci left: 1.002043e-02	ci right 1.169406e-02	k: 650	n:60000
PCGF2   60000 perm   12 sec   (5204 perm/sec)   p_kst 1.083333e-02   p_cons 7.458167e-01   p_joint 6.380000e-02

Joint ci ratio: 6.054538e-02	ci left: 5.478680e-02	ci right 5.822151e-02	k: 3954	n:70000
Cons ci ratio: 8.665894e-03	ci left: 7.418543e-01	ci right 7.483254e-01	k: 52157	n:70000
KS ci ratio: 1.404869e-01	ci left: 1.022672e-02	ci right 1.178564e-02	k: 769	n:70000
PCGF2   70000 perm   14 sec   (5085 perm/sec)   p_kst 1.098571e-02   p_cons 7.451000e-01   p_joint 5.648571e-02

Joint ci ratio: 5.270500e-02	ci left: 6.296789e-02	ci right 6.638877e-02	k: 5173	n:80000
Cons ci ratio: 8.107539e-03	ci left: 7.420022e-01	ci right 7.480550e-01	k: 59603	n:80000
KS ci ratio: 1.301484e-01	ci left: 1.048228e-02	ci right 1.195348e-02	k: 896	n:80000
PCGF2   80000 perm   16 sec   (4966 perm/sec)   p_kst 1.120000e-02   p_cons 7.450375e-01   p_joint 6.466250e-02

Joint ci ratio: 4.939543e-02	ci left: 6.378228e-02	ci right 6.702358e-02	k: 5885	n:90000
Cons ci ratio: 7.635005e-03	ci left: 7.426185e-01	ci right 7.483212e-01	k: 67093	n:90000
KS ci ratio: 1.215008e-01	ci left: 1.073821e-02	ci right 1.213799e-02	k: 1028	n:90000
PCGF2   90000 perm   18 sec   (4870 perm/sec)   p_kst 1.142222e-02   p_cons 7.454778e-01   p_joint 6.538889e-02

Joint ci ratio: 5.048575e-02	ci left: 5.542270e-02	ci right 5.830307e-02	k: 5685	n:100000
Cons ci ratio: 7.240680e-03	ci left: 7.428986e-01	ci right 7.483072e-01	k: 74561	n:100000
KS ci ratio: 1.157446e-01	ci left: 1.068323e-02	ci right 1.200535e-02	k: 1133	n:100000
PCGF2   100000 perm   21 sec   (4781 perm/sec)   p_kst 1.133000e-02   p_cons 7.456100e-01   p_joint 5.685000e-02

Joint ci ratio: 4.798841e-02	ci left: 5.581683e-02	ci right 5.857021e-02	k: 6290	n:110000
Cons ci ratio: 6.905058e-03	ci left: 7.429514e-01	ci right 7.481084e-01	k: 82009	n:110000
KS ci ratio: 1.098870e-01	ci left: 1.080754e-02	ci right 1.207297e-02	k: 1257	n:110000
PCGF2   110000 perm   23 sec   (4695 perm/sec)   p_kst 1.142727e-02   p_cons 7.455364e-01   p_joint 5.718182e-02

Joint ci ratio: 4.596641e-02	ci left: 5.582669e-02	ci right 5.846143e-02	k: 6856	n:120000
Cons ci ratio: 6.606498e-03	ci left: 7.433264e-01	ci right 7.482617e-01	k: 89496	n:120000
KS ci ratio: 1.047604e-01	ci left: 1.092877e-02	ci right 1.214501e-02	k: 1383	n:120000
PCGF2   120000 perm   26 sec   (4611 perm/sec)   p_kst 1.152500e-02   p_cons 7.458000e-01   p_joint 5.713333e-02

Joint ci ratio: 4.410149e-02	ci left: 5.602741e-02	ci right 5.856161e-02	k: 7447	n:130000
Cons ci ratio: 6.344743e-03	ci left: 7.435781e-01	ci right 7.483186e-01	k: 96974	n:130000
KS ci ratio: 1.004925e-01	ci left: 1.098750e-02	ci right 1.215752e-02	k: 1503	n:130000
PCGF2   130000 perm   29 sec   (4532 perm/sec)   p_kst 1.156154e-02   p_cons 7.459538e-01   p_joint 5.728462e-02

Joint ci ratio: 4.244096e-02	ci left: 5.621545e-02	ci right 5.866006e-02	k: 8040	n:140000
Cons ci ratio: 6.114356e-03	ci left: 7.436395e-01	ci right 7.482074e-01	k: 104430	n:140000
KS ci ratio: 9.599191e-02	ci left: 1.120604e-02	ci right 1.234289e-02	k: 1647	n:140000
PCGF2   140000 perm   31 sec   (4456 perm/sec)   p_kst 1.176429e-02   p_cons 7.459286e-01   p_joint 5.742857e-02

Outputting figure to mutsig2_images.part000000000127/PCGF2.2_1071_140000_0.011764_0.74593_0.057429.png
                gene_name: PCGF2
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 96 percent done.
PCID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
PCID2   10000 perm   2 sec   (6623 perm/sec)   p_kst 4.616000e-01   p_cons 4.291000e-01   p_joint 7.054000e-01

Outputting figure to mutsig2_images.part000000000127/PCID2.2_1256_10000_0.4616_0.4291_0.7054.png
                gene_name: PCID2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 97 percent done.
PCMTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
PCMTD2   10000 perm   1 sec   (6682 perm/sec)   p_kst 2.971000e-01   p_cons 9.681000e-01   p_joint 6.606000e-01

Outputting figure to mutsig2_images.part000000000127/PCMTD2.2_1106_10000_0.2971_0.9681_0.6606.png
                gene_name: PCMTD2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 99 percent done.
PCYT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
KS ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
PCYT1A   10000 perm   2 sec   (6662 perm/sec)   p_kst 6.826000e-01   p_cons 6.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCYT1A.2_1136_10000_0.6826_0.6532_1.png
                gene_name: PCYT1A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000127
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 127 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422296: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000128> was used as the working directory.
Started at Wed Oct 24 18:02:21 2012
Results reported at Wed Oct 24 20:57:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000128.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000128.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 128  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000128.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10498.52 sec.
    Max Memory :      5410 MB
    Max Swap   :      7816 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
128
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 128
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 128: processing genes 11491 - 11580
Calculating significance of each gene.
Using projection method.
11491	PDCD10	3.301712e-01
11492	PDCD11	9.994407e-01
11493	PDCD1LG2	1
In gene PDCD2 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 942     n = 1	mu =   6.02e-07
11494	PDCD2	7.485697e-02
11495	PDCD2L	1
11496	PDCD4	7.492438e-01
11497	PDCD5	1
11498	PDCD6	1
11499	PDCD6IP	9.072159e-01
11500	PDCD7	1
11501	PDCL	1
11502	PDCL2	1
11503	PDCL3	3.563397e-01
11504	PDDC1	1
11505	PDE10A	3.968392e-03
11506	PDE11A	4.595866e-01
11507	PDE12	1
11508	PDE1A	2.363721e-02
11509	PDE1B	1.801767e-01
11510	PDE1C	5.010660e-01
11511	PDE2A	9.873801e-01
In gene PDE3A the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 3145    n = 1	mu =   3.35e-07
11512	PDE3A	1.765681e-01
11513	PDE3B	3.881479e-01
11514	PDE4A	7.802121e-01
11515	PDE4B	7.337001e-01
11516	PDE4C	9.160113e-01
11517	PDE4D	5.843023e-01
11518	PDE4DIP	1
11519	PDE5A	1
11520	PDE6A	1.172978e-01
11521	PDE6B	7.425260e-01
11522	PDE6C	9.073799e-01
11523	PDE6D	6.551650e-01
11524	PDE6G	5.564240e-02
11525	PDE6H	1
11526	PDE7A	6.988188e-01
11527	PDE7B	4.980624e-01
11528	PDE8A	9.003144e-01
11529	PDE8B	9.865323e-01
11530	PDE9A	9.031632e-01
11531	PDGFA	9.585783e-03
11532	PDGFB	7.229539e-01
11533	PDGFC	1
11534	PDGFD	1
11535	PDGFRA	9.954112e-01
11536	PDGFRB	3.755963e-01
11537	PDGFRL	5.433797e-01
11538	PDHA1	4.296507e-01
11539	PDHA2	4.921369e-03
11540	PDHB	1
11541	PDHX	3.205491e-01
11542	PDIA2	7.721561e-01
11543	PDIA3	1
11544	PDIA4	1
11545	PDIA5	4.434528e-01
11546	PDIA6	1
11547	PDIK1L	1
11548	PDILT	1.607915e-01
11549	PDK1	1.395811e-01
11550	PDK2	6.116580e-01
11551	PDK3	6.432298e-01
11552	PDK4	1
11553	PDLIM1	2.546202e-01
11554	PDLIM2	1
11555	PDLIM3	6.559574e-01
11556	PDLIM4	7.886911e-01
11557	PDLIM5	1
11558	PDLIM7	1
11559	PDP1	7.278089e-01
11560	PDP2	1
11561	PDPK1	8.235096e-01
11562	PDPN	7.342420e-01
11563	PDPR	1.593287e-01
11564	PDRG1	5.060612e-01
11565	PDS5A	3.784774e-01
11566	PDS5B	7.823962e-01
11567	PDSS1	8.845781e-01
11568	PDSS2	5.050051e-01
11569	PDX1	1
11570	PDXDC1	1
11571	PDXK	1
11572	PDXP	1
11573	PDYN	1.720155e-01
11574	PDZD11	1
11575	PDZD2	1
11576	PDZD3	1
11577	PDZD4	1
11578	PDZD7	4.803141e-02
11579	PDZD8	1
11580	PDZD9	2.799015e-01
Done

Running MutSig 2:
Scatter job 128: processing genes 11491 - 11580
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDE4DIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
KS ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
PDE4DIP   10000 perm   3 sec   (3395 perm/sec)   p_kst 3.002000e-01   p_cons 3.501000e-01   p_joint 4.028000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4DIP.47_8813_10000_0.3002_0.3501_0.4028.png
                gene_name: PDE4DIP
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
PDZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
KS ci ratio: 4.337666e-01	ci left: 6.348452e-03	ci right 9.946939e-03	k: 80	n:10000
PDZD2   10000 perm   3 sec   (3853 perm/sec)   p_kst 8.000000e-03   p_cons 1.330000e-02   p_joint 1.080000e-02

Joint ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
Cons ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
KS ci ratio: 2.853085e-01	ci left: 8.016427e-03	ci right 1.072909e-02	k: 186	n:20000
PDZD2   20000 perm   6 sec   (3551 perm/sec)   p_kst 9.300000e-03   p_cons 1.110000e-02   p_joint 5.950000e-03

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
KS ci ratio: 2.267148e-01	ci left: 8.747748e-03	ci right 1.101535e-02	k: 295	n:30000
PDZD2   30000 perm   9 sec   (3461 perm/sec)   p_kst 9.833333e-03   p_cons 1.173333e-02   p_joint 3.200000e-03

Joint ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
Cons ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
KS ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
PDZD2   40000 perm   12 sec   (3386 perm/sec)   p_kst 9.600000e-03   p_cons 1.297500e-02   p_joint 3.275000e-03

Joint ci ratio: 3.332284e-01	ci left: 2.300894e-03	ci right 3.238319e-03	k: 137	n:50000
Cons ci ratio: 1.533496e-01	ci left: 1.191002e-02	ci right 1.390713e-02	k: 644	n:50000
KS ci ratio: 1.788139e-01	ci left: 8.668311e-03	ci right 1.038935e-02	k: 475	n:50000
PDZD2   50000 perm   15 sec   (3337 perm/sec)   p_kst 9.500000e-03   p_cons 1.288000e-02   p_joint 2.740000e-03

Joint ci ratio: 3.114450e-01	ci left: 2.223788e-03	ci right 3.058813e-03	k: 157	n:60000
Cons ci ratio: 1.397145e-01	ci left: 1.204455e-02	ci right 1.386968e-02	k: 776	n:60000
KS ci ratio: 1.628318e-01	ci left: 8.787262e-03	ci right 1.036072e-02	k: 573	n:60000
PDZD2   60000 perm   18 sec   (3286 perm/sec)   p_kst 9.550000e-03   p_cons 1.293333e-02   p_joint 2.616667e-03

Joint ci ratio: 3.448161e-01	ci left: 1.525754e-03	ci right 2.173802e-03	k: 128	n:70000
Cons ci ratio: 1.302636e-01	ci left: 1.193889e-02	ci right 1.361615e-02	k: 893	n:70000
KS ci ratio: 1.515164e-01	ci left: 8.753397e-03	ci right 1.020199e-02	k: 662	n:70000
PDZD2   70000 perm   22 sec   (3239 perm/sec)   p_kst 9.457143e-03   p_cons 1.275714e-02   p_joint 1.828571e-03

Joint ci ratio: 3.230170e-01	ci left: 1.541191e-03	ci right 2.145853e-03	k: 146	n:80000
Cons ci ratio: 1.221972e-01	ci left: 1.192340e-02	ci right 1.348724e-02	k: 1015	n:80000
KS ci ratio: 1.408620e-01	ci left: 8.911768e-03	ci right 1.027415e-02	k: 766	n:80000
PDZD2   80000 perm   25 sec   (3193 perm/sec)   p_kst 9.575000e-03   p_cons 1.268750e-02   p_joint 1.825000e-03

Joint ci ratio: 3.156105e-01	ci left: 1.441480e-03	ci right 1.991436e-03	k: 153	n:90000
Cons ci ratio: 1.152598e-01	ci left: 1.195703e-02	ci right 1.343019e-02	k: 1141	n:90000
KS ci ratio: 1.323326e-01	ci left: 9.016232e-03	ci right 1.030456e-02	k: 868	n:90000
PDZD2   90000 perm   29 sec   (3154 perm/sec)   p_kst 9.644444e-03   p_cons 1.267778e-02   p_joint 1.700000e-03

Joint ci ratio: 3.077332e-01	ci left: 1.371068e-03	ci right 1.878542e-03	k: 161	n:100000
Cons ci ratio: 1.091227e-01	ci left: 1.204433e-02	ci right 1.344415e-02	k: 1273	n:100000
KS ci ratio: 1.259744e-01	ci left: 8.985531e-03	ci right 1.020317e-02	k: 958	n:100000
PDZD2   100000 perm   32 sec   (3120 perm/sec)   p_kst 9.580000e-03   p_cons 1.273000e-02   p_joint 1.610000e-03

Joint ci ratio: 3.476413e-01	ci left: 9.542812e-04	ci right 1.363661e-03	k: 126	n:110000
Cons ci ratio: 1.046283e-01	ci left: 1.194032e-02	ci right 1.326738e-02	k: 1385	n:110000
KS ci ratio: 1.194788e-01	ci left: 9.111576e-03	ci right 1.027813e-02	k: 1065	n:110000
PDZD2   110000 perm   36 sec   (3082 perm/sec)   p_kst 9.681818e-03   p_cons 1.259091e-02   p_joint 1.145455e-03

Joint ci ratio: 2.151644e-01	ci left: 2.461611e-03	ci right 3.062819e-03	k: 330	n:120000
Cons ci ratio: 1.048755e-01	ci left: 1.090441e-02	ci right 1.211937e-02	k: 1380	n:120000
KS ci ratio: 1.143878e-01	ci left: 9.136980e-03	ci right 1.025357e-02	k: 1162	n:120000
PDZD2   120000 perm   39 sec   (3040 perm/sec)   p_kst 9.683333e-03   p_cons 1.150000e-02   p_joint 2.750000e-03

Joint ci ratio: 2.120005e-01	ci left: 2.345049e-03	ci right 2.908271e-03	k: 340	n:130000
Cons ci ratio: 1.006959e-01	ci left: 1.094249e-02	ci right 1.211022e-02	k: 1497	n:130000
KS ci ratio: 1.101174e-01	ci left: 9.121957e-03	ci right 1.019239e-02	k: 1254	n:130000
PDZD2   130000 perm   43 sec   (3005 perm/sec)   p_kst 9.646154e-03   p_cons 1.151538e-02   p_joint 2.615385e-03

Joint ci ratio: 2.192269e-01	ci left: 2.028849e-03	ci right 2.534975e-03	k: 318	n:140000
Cons ci ratio: 9.710097e-02	ci left: 1.094807e-02	ci right 1.207230e-02	k: 1610	n:140000
KS ci ratio: 1.062524e-01	ci left: 9.116699e-03	ci right 1.014662e-02	k: 1347	n:140000
PDZD2   140000 perm   47 sec   (2972 perm/sec)   p_kst 9.621429e-03   p_cons 1.150000e-02   p_joint 2.271429e-03

Joint ci ratio: 2.148990e-01	ci left: 1.975542e-03	ci right 2.457356e-03	k: 331	n:150000
Cons ci ratio: 9.400346e-02	ci left: 1.092098e-02	ci right 1.200469e-02	k: 1718	n:150000
KS ci ratio: 1.019845e-01	ci left: 9.255659e-03	ci right 1.025676e-02	k: 1462	n:150000
PDZD2   150000 perm   51 sec   (2943 perm/sec)   p_kst 9.746667e-03   p_cons 1.145333e-02   p_joint 2.206667e-03

Joint ci ratio: 2.108174e-01	ci left: 1.928984e-03	ci right 2.389354e-03	k: 344	n:160000
Cons ci ratio: 9.078337e-02	ci left: 1.099553e-02	ci right 1.204728e-02	k: 1842	n:160000
KS ci ratio: 9.857188e-02	ci left: 9.304798e-03	ci right 1.027559e-02	k: 1565	n:160000
PDZD2   160000 perm   55 sec   (2910 perm/sec)   p_kst 9.781250e-03   p_cons 1.151250e-02   p_joint 2.150000e-03

Joint ci ratio: 2.049612e-01	ci left: 1.927038e-03	ci right 2.372566e-03	k: 364	n:170000
Cons ci ratio: 8.814542e-02	ci left: 1.099282e-02	ci right 1.201218e-02	k: 1954	n:170000
KS ci ratio: 9.545153e-02	ci left: 9.354391e-03	ci right 1.029773e-02	k: 1669	n:170000
PDZD2   170000 perm   59 sec   (2884 perm/sec)   p_kst 9.817647e-03   p_cons 1.149412e-02   p_joint 2.141176e-03

Joint ci ratio: 2.072620e-01	ci left: 1.777815e-03	ci right 2.194042e-03	k: 356	n:180000
Cons ci ratio: 8.698954e-02	ci left: 1.067003e-02	ci right 1.164581e-02	k: 2007	n:180000
KS ci ratio: 9.284805e-02	ci left: 9.350052e-03	ci right 1.026584e-02	k: 1764	n:180000
PDZD2   180000 perm   63 sec   (2854 perm/sec)   p_kst 9.800000e-03   p_cons 1.115000e-02   p_joint 1.977778e-03

Joint ci ratio: 2.099410e-01	ci left: 1.639339e-03	ci right 2.028744e-03	k: 347	n:190000
Cons ci ratio: 8.478185e-02	ci left: 1.065435e-02	ci right 1.160276e-02	k: 2113	n:190000
KS ci ratio: 9.056962e-02	ci left: 9.320757e-03	ci right 1.021009e-02	k: 1854	n:190000
PDZD2   190000 perm   67 sec   (2823 perm/sec)   p_kst 9.757895e-03   p_cons 1.112105e-02   p_joint 1.826316e-03

Joint ci ratio: 1.823616e-01	ci left: 2.094802e-03	ci right 2.519829e-03	k: 460	n:200000
Cons ci ratio: 8.247157e-02	ci left: 1.070910e-02	ci right 1.163515e-02	k: 2233	n:200000
KS ci ratio: 8.743535e-02	ci left: 9.514738e-03	ci right 1.038955e-02	k: 1989	n:200000
PDZD2   200000 perm   72 sec   (2793 perm/sec)   p_kst 9.945000e-03   p_cons 1.116500e-02   p_joint 2.300000e-03

Joint ci ratio: 1.831698e-01	ci left: 1.976863e-03	ci right 2.379933e-03	k: 456	n:210000
Cons ci ratio: 8.013408e-02	ci left: 1.081496e-02	ci right 1.172242e-02	k: 2365	n:210000
KS ci ratio: 8.581694e-02	ci left: 9.415699e-03	ci right 1.026458e-02	k: 2065	n:210000
PDZD2   210000 perm   76 sec   (2765 perm/sec)   p_kst 9.833333e-03   p_cons 1.126190e-02   p_joint 2.171429e-03

Joint ci ratio: 1.791013e-01	ci left: 1.978132e-03	ci right 2.371532e-03	k: 477	n:220000
Cons ci ratio: 7.849478e-02	ci left: 1.076889e-02	ci right 1.165315e-02	k: 2465	n:220000
KS ci ratio: 8.377317e-02	ci left: 9.441523e-03	ci right 1.027147e-02	k: 2167	n:220000
PDZD2   220000 perm   80 sec   (2736 perm/sec)   p_kst 9.850000e-03   p_cons 1.120455e-02   p_joint 2.168182e-03

Joint ci ratio: 1.779939e-01	ci left: 1.917042e-03	ci right 2.295681e-03	k: 483	n:230000
Cons ci ratio: 7.656082e-02	ci left: 1.083790e-02	ci right 1.170492e-02	k: 2591	n:230000
KS ci ratio: 8.203320e-02	ci left: 9.426983e-03	ci right 1.023762e-02	k: 2260	n:230000
PDZD2   230000 perm   85 sec   (2712 perm/sec)   p_kst 9.826087e-03   p_cons 1.126522e-02   p_joint 2.100000e-03

Joint ci ratio: 1.778177e-01	ci left: 1.841140e-03	ci right 2.204388e-03	k: 484	n:240000
Cons ci ratio: 7.490258e-02	ci left: 1.086050e-02	ci right 1.170970e-02	k: 2707	n:240000
KS ci ratio: 8.062245e-02	ci left: 9.360733e-03	ci right 1.015117e-02	k: 2340	n:240000
PDZD2   240000 perm   89 sec   (2684 perm/sec)   p_kst 9.750000e-03   p_cons 1.127917e-02   p_joint 2.016667e-03

Joint ci ratio: 1.844187e-01	ci left: 1.637642e-03	ci right 1.974077e-03	k: 450	n:250000
Cons ci ratio: 7.355867e-02	ci left: 1.081865e-02	ci right 1.164874e-02	k: 2807	n:250000
KS ci ratio: 7.924897e-02	ci left: 9.307737e-03	ci right 1.007969e-02	k: 2422	n:250000
PDZD2   250000 perm   94 sec   (2657 perm/sec)   p_kst 9.688000e-03   p_cons 1.122800e-02   p_joint 1.800000e-03

Joint ci ratio: 1.856664e-01	ci left: 1.552641e-03	ci right 1.874014e-03	k: 444	n:260000
Cons ci ratio: 7.220928e-02	ci left: 1.080280e-02	ci right 1.161584e-02	k: 2913	n:260000
KS ci ratio: 7.780236e-02	ci left: 9.292871e-03	ci right 1.004889e-02	k: 2513	n:260000
PDZD2   260000 perm   99 sec   (2631 perm/sec)   p_kst 9.665385e-03   p_cons 1.120385e-02   p_joint 1.707692e-03

Joint ci ratio: 1.880144e-01	ci left: 1.456294e-03	ci right 1.761972e-03	k: 433	n:270000
Cons ci ratio: 7.107447e-02	ci left: 1.074460e-02	ci right 1.154002e-02	k: 3007	n:270000
KS ci ratio: 7.640256e-02	ci left: 9.286492e-03	ci right 1.002779e-02	k: 2606	n:270000
PDZD2   270000 perm   104 sec   (2606 perm/sec)   p_kst 9.651852e-03   p_cons 1.113704e-02   p_joint 1.603704e-03

Joint ci ratio: 1.869443e-01	ci left: 1.421300e-03	ci right 1.717742e-03	k: 438	n:280000
Cons ci ratio: 6.953953e-02	ci left: 1.083104e-02	ci right 1.161484e-02	k: 3141	n:280000
KS ci ratio: 7.501960e-02	ci left: 9.294703e-03	ci right 1.002264e-02	k: 2703	n:280000
PDZD2   280000 perm   109 sec   (2575 perm/sec)   p_kst 9.653571e-03   p_cons 1.121786e-02   p_joint 1.564286e-03

Joint ci ratio: 1.854743e-01	ci left: 1.395301e-03	ci right 1.683773e-03	k: 445	n:290000
Cons ci ratio: 6.832172e-02	ci left: 1.084049e-02	ci right 1.161070e-02	k: 3254	n:290000
KS ci ratio: 7.373571e-02	ci left: 9.295689e-03	ci right 1.001071e-02	k: 2798	n:290000
PDZD2   290000 perm   114 sec   (2551 perm/sec)   p_kst 9.648276e-03   p_cons 1.122069e-02   p_joint 1.534483e-03

Joint ci ratio: 1.882469e-01	ci left: 1.307478e-03	ci right 1.582297e-03	k: 432	n:300000
Cons ci ratio: 6.740904e-02	ci left: 1.077076e-02	ci right 1.152539e-02	k: 3343	n:300000
KS ci ratio: 7.265511e-02	ci left: 9.260701e-03	ci right 9.962154e-03	k: 2882	n:300000
PDZD2   300000 perm   119 sec   (2526 perm/sec)   p_kst 9.606667e-03   p_cons 1.114333e-02   p_joint 1.440000e-03

Joint ci ratio: 1.865335e-01	ci left: 1.289896e-03	ci right 1.558272e-03	k: 440	n:310000
Cons ci ratio: 6.621091e-02	ci left: 1.081030e-02	ci right 1.155372e-02	k: 3465	n:310000
KS ci ratio: 7.140229e-02	ci left: 9.285079e-03	ci right 9.975748e-03	k: 2984	n:310000
PDZD2   310000 perm   124 sec   (2502 perm/sec)   p_kst 9.625806e-03   p_cons 1.117742e-02   p_joint 1.419355e-03

Joint ci ratio: 1.810692e-01	ci left: 1.330083e-03	ci right 1.597825e-03	k: 467	n:320000
Cons ci ratio: 6.519402e-02	ci left: 1.080751e-02	ci right 1.153889e-02	k: 3574	n:320000
KS ci ratio: 7.015478e-02	ci left: 9.323383e-03	ci right 1.000429e-02	k: 3091	n:320000
PDZD2   320000 perm   129 sec   (2480 perm/sec)   p_kst 9.659375e-03   p_cons 1.116875e-02   p_joint 1.459375e-03

Joint ci ratio: 1.417492e-01	ci left: 2.148199e-03	ci right 2.478819e-03	k: 762	n:330000
Cons ci ratio: 6.416098e-02	ci left: 1.082584e-02	ci right 1.154642e-02	k: 3690	n:330000
KS ci ratio: 6.917819e-02	ci left: 9.302874e-03	ci right 9.972446e-03	k: 3179	n:330000
PDZD2   330000 perm   134 sec   (2457 perm/sec)   p_kst 9.633333e-03   p_cons 1.118182e-02   p_joint 2.309091e-03

Joint ci ratio: 1.427893e-01	ci left: 2.053809e-03	ci right 2.372418e-03	k: 751	n:340000
Cons ci ratio: 6.326803e-02	ci left: 1.081133e-02	ci right 1.152057e-02	k: 3795	n:340000
KS ci ratio: 6.823074e-02	ci left: 9.286525e-03	ci right 9.945403e-03	k: 3268	n:340000
PDZD2   340000 perm   139 sec   (2438 perm/sec)   p_kst 9.611765e-03   p_cons 1.116176e-02   p_joint 2.208824e-03

Joint ci ratio: 1.398429e-01	ci left: 2.083327e-03	ci right 2.399291e-03	k: 783	n:350000
Cons ci ratio: 6.229036e-02	ci left: 1.083992e-02	ci right 1.153964e-02	k: 3915	n:350000
KS ci ratio: 6.743278e-02	ci left: 9.240265e-03	ci right 9.887894e-03	k: 3346	n:350000
PDZD2   350000 perm   145 sec   (2418 perm/sec)   p_kst 9.560000e-03   p_cons 1.118571e-02   p_joint 2.237143e-03

Joint ci ratio: 1.438563e-01	ci left: 1.910238e-03	ci right 2.208979e-03	k: 740	n:360000
Cons ci ratio: 6.135666e-02	ci left: 1.086699e-02	ci right 1.155758e-02	k: 4035	n:360000
KS ci ratio: 6.645677e-02	ci left: 9.253989e-03	ci right 9.892831e-03	k: 3445	n:360000
PDZD2   360000 perm   150 sec   (2399 perm/sec)   p_kst 9.569444e-03   p_cons 1.120833e-02   p_joint 2.055556e-03

Joint ci ratio: 1.421408e-01	ci left: 1.905518e-03	ci right 2.199665e-03	k: 758	n:370000
Cons ci ratio: 6.047843e-02	ci left: 1.088735e-02	ci right 1.156898e-02	k: 4153	n:370000
KS ci ratio: 6.554996e-02	ci left: 9.259059e-03	ci right 9.889198e-03	k: 3541	n:370000
PDZD2   370000 perm   155 sec   (2380 perm/sec)   p_kst 9.570270e-03   p_cons 1.122432e-02   p_joint 2.048649e-03

Joint ci ratio: 1.404852e-01	ci left: 1.901066e-03	ci right 2.190822e-03	k: 776	n:380000
Cons ci ratio: 5.973595e-02	ci left: 1.087041e-02	ci right 1.154233e-02	k: 4257	n:380000
KS ci ratio: 6.471522e-02	ci left: 9.253561e-03	ci right 9.875005e-03	k: 3633	n:380000
PDZD2   380000 perm   161 sec   (2361 perm/sec)   p_kst 9.560526e-03   p_cons 1.120263e-02   p_joint 2.042105e-03

Joint ci ratio: 1.878445e-01	ci left: 1.010625e-03	ci right 1.222541e-03	k: 434	n:390000
Cons ci ratio: 5.674184e-02	ci left: 1.174657e-02	ci right 1.243507e-02	k: 4714	n:390000
KS ci ratio: 6.382516e-02	ci left: 9.273628e-03	ci right 9.887537e-03	k: 3735	n:390000
PDZD2   390000 perm   166 sec   (2344 perm/sec)   p_kst 9.576923e-03   p_cons 1.208718e-02   p_joint 1.112821e-03

Joint ci ratio: 1.865635e-01	ci left: 9.996555e-04	ci right 1.207680e-03	k: 440	n:400000
Cons ci ratio: 5.601576e-02	ci left: 1.175607e-02	ci right 1.243602e-02	k: 4837	n:400000
KS ci ratio: 6.312046e-02	ci left: 9.248451e-03	ci right 9.853686e-03	k: 3819	n:400000
PDZD2   400000 perm   172 sec   (2326 perm/sec)   p_kst 9.547500e-03   p_cons 1.209250e-02   p_joint 1.100000e-03

Joint ci ratio: 1.851012e-01	ci left: 9.915522e-04	ci right 1.196092e-03	k: 447	n:410000
Cons ci ratio: 5.531685e-02	ci left: 1.176516e-02	ci right 1.243688e-02	k: 4960	n:410000
KS ci ratio: 6.248709e-02	ci left: 9.210129e-03	ci right 9.806589e-03	k: 3897	n:410000
PDZD2   410000 perm   178 sec   (2306 perm/sec)   p_kst 9.504878e-03   p_cons 1.209756e-02   p_joint 1.090244e-03

Joint ci ratio: 1.826706e-01	ci left: 9.952003e-04	ci right 1.197498e-03	k: 459	n:420000
Cons ci ratio: 5.455663e-02	ci left: 1.181146e-02	ci right 1.247625e-02	k: 5099	n:420000
KS ci ratio: 6.179399e-02	ci left: 9.197107e-03	ci right 9.785881e-03	k: 3985	n:420000
PDZD2   420000 perm   184 sec   (2289 perm/sec)   p_kst 9.488095e-03   p_cons 1.214048e-02   p_joint 1.092857e-03

Joint ci ratio: 1.816871e-01	ci left: 9.831532e-04	ci right 1.181808e-03	k: 464	n:430000
Cons ci ratio: 5.388421e-02	ci left: 1.183041e-02	ci right 1.248781e-02	k: 5227	n:430000
KS ci ratio: 6.102524e-02	ci left: 9.214500e-03	ci right 9.796789e-03	k: 4086	n:430000
PDZD2   430000 perm   189 sec   (2270 perm/sec)   p_kst 9.502326e-03   p_cons 1.215581e-02   p_joint 1.079070e-03

Joint ci ratio: 1.830740e-01	ci left: 9.456243e-04	ci right 1.138316e-03	k: 457	n:440000
Cons ci ratio: 5.327634e-02	ci left: 1.183061e-02	ci right 1.248038e-02	k: 5347	n:440000
KS ci ratio: 6.032812e-02	ci left: 9.217713e-03	ci right 9.793319e-03	k: 4181	n:440000
PDZD2   440000 perm   195 sec   (2253 perm/sec)   p_kst 9.502273e-03   p_cons 1.215227e-02   p_joint 1.038636e-03

Joint ci ratio: 1.818874e-01	ci left: 9.373343e-04	ci right 1.126962e-03	k: 463	n:450000
Cons ci ratio: 5.275211e-02	ci left: 1.180233e-02	ci right 1.244397e-02	k: 5454	n:450000
KS ci ratio: 5.964029e-02	ci left: 9.225198e-03	ci right 9.794477e-03	k: 4278	n:450000
PDZD2   450000 perm   201 sec   (2236 perm/sec)   p_kst 9.506667e-03   p_cons 1.212000e-02   p_joint 1.028889e-03

Joint ci ratio: 1.797689e-01	ci left: 9.397883e-04	ci right 1.127457e-03	k: 474	n:460000
Cons ci ratio: 5.221930e-02	ci left: 1.178604e-02	ci right 1.242013e-02	k: 5566	n:460000
KS ci ratio: 5.896866e-02	ci left: 9.234536e-03	ci right 9.797755e-03	k: 4376	n:460000
PDZD2   460000 perm   207 sec   (2219 perm/sec)   p_kst 9.513043e-03   p_cons 1.210000e-02   p_joint 1.030435e-03

Joint ci ratio: 1.777227e-01	ci left: 9.421500e-04	ci right 1.127919e-03	k: 485	n:470000
Cons ci ratio: 5.163333e-02	ci left: 1.180198e-02	ci right 1.242959e-02	k: 5693	n:470000
KS ci ratio: 5.837192e-02	ci left: 9.226735e-03	ci right 9.783592e-03	k: 4466	n:470000
PDZD2   470000 perm   213 sec   (2202 perm/sec)   p_kst 9.502128e-03   p_cons 1.211277e-02   p_joint 1.031915e-03

Joint ci ratio: 1.777246e-01	ci left: 9.225210e-04	ci right 1.104422e-03	k: 485	n:480000
Cons ci ratio: 5.108442e-02	ci left: 1.180906e-02	ci right 1.243018e-02	k: 5816	n:480000
KS ci ratio: 5.778013e-02	ci left: 9.223395e-03	ci right 9.774217e-03	k: 4558	n:480000
PDZD2   480000 perm   220 sec   (2185 perm/sec)   p_kst 9.495833e-03   p_cons 1.211667e-02   p_joint 1.010417e-03

Joint ci ratio: 1.745207e-01	ci left: 9.388102e-04	ci right 1.120234e-03	k: 503	n:490000
Cons ci ratio: 5.055266e-02	ci left: 1.181589e-02	ci right 1.243071e-02	k: 5939	n:490000
KS ci ratio: 5.720599e-02	ci left: 9.220217e-03	ci right 9.765198e-03	k: 4650	n:490000
PDZD2   490000 perm   226 sec   (2169 perm/sec)   p_kst 9.489796e-03   p_cons 1.212041e-02   p_joint 1.026531e-03

Joint ci ratio: 1.731523e-01	ci left: 9.353377e-04	ci right 1.114525e-03	k: 511	n:500000
Cons ci ratio: 5.010832e-02	ci left: 1.178890e-02	ci right 1.239677e-02	k: 6045	n:500000
KS ci ratio: 5.649251e-02	ci left: 9.268465e-03	ci right 9.809241e-03	k: 4768	n:500000
PDZD2   500000 perm   232 sec   (2152 perm/sec)   p_kst 9.536000e-03   p_cons 1.209000e-02   p_joint 1.022000e-03

Joint ci ratio: 1.718155e-01	ci left: 9.320067e-04	ci right 1.109035e-03	k: 519	n:510000
Cons ci ratio: 4.958582e-02	ci left: 1.180560e-02	ci right 1.240780e-02	k: 6173	n:510000
KS ci ratio: 5.595555e-02	ci left: 9.264586e-03	ci right 9.799832e-03	k: 4860	n:510000
PDZD2   510000 perm   239 sec   (2136 perm/sec)   p_kst 9.529412e-03   p_cons 1.210392e-02   p_joint 1.017647e-03

Joint ci ratio: 1.388342e-01	ci left: 1.424478e-03	ci right 1.638830e-03	k: 795	n:520000
Cons ci ratio: 4.824538e-02	ci left: 1.223399e-02	ci right 1.284069e-02	k: 6518	n:520000
KS ci ratio: 5.541668e-02	ci left: 9.266569e-03	ci right 9.796609e-03	k: 4955	n:520000
PDZD2   520000 perm   245 sec   (2121 perm/sec)   p_kst 9.528846e-03   p_cons 1.253462e-02   p_joint 1.528846e-03

Joint ci ratio: 1.374595e-01	ci left: 1.426746e-03	ci right 1.639140e-03	k: 811	n:530000
Cons ci ratio: 4.779668e-02	ci left: 1.223244e-02	ci right 1.283328e-02	k: 6641	n:530000
KS ci ratio: 5.487663e-02	ci left: 9.274085e-03	ci right 9.799222e-03	k: 5053	n:530000
PDZD2   530000 perm   252 sec   (2106 perm/sec)   p_kst 9.533962e-03   p_cons 1.253019e-02   p_joint 1.530189e-03

Joint ci ratio: 1.365383e-01	ci left: 1.419997e-03	ci right 1.629854e-03	k: 822	n:540000
Cons ci ratio: 4.733194e-02	ci left: 1.224563e-02	ci right 1.284110e-02	k: 6772	n:540000
KS ci ratio: 5.437338e-02	ci left: 9.274039e-03	ci right 9.794206e-03	k: 5147	n:540000
PDZD2   540000 perm   258 sec   (2091 perm/sec)   p_kst 9.531481e-03   p_cons 1.254074e-02   p_joint 1.522222e-03

Joint ci ratio: 1.350689e-01	ci left: 1.425794e-03	ci right 1.634058e-03	k: 840	n:550000
Cons ci ratio: 4.607612e-02	ci left: 1.268971e-02	ci right 1.328998e-02	k: 7143	n:550000
KS ci ratio: 5.388892e-02	ci left: 9.272222e-03	ci right 9.787510e-03	k: 5240	n:550000
PDZD2   550000 perm   265 sec   (2076 perm/sec)   p_kst 9.527273e-03   p_cons 1.298727e-02   p_joint 1.527273e-03

Joint ci ratio: 1.210916e-01	ci left: 1.754728e-03	ci right 1.982618e-03	k: 1045	n:560000
Cons ci ratio: 4.564346e-02	ci left: 1.270319e-02	ci right 1.329830e-02	k: 7279	n:560000
KS ci ratio: 5.339192e-02	ci left: 9.279300e-03	ci right 9.790079e-03	k: 5338	n:560000
PDZD2   560000 perm   272 sec   (2061 perm/sec)   p_kst 9.532143e-03   p_cons 1.299821e-02   p_joint 1.866071e-03

Joint ci ratio: 1.225698e-01	ci left: 1.681416e-03	ci right 1.902644e-03	k: 1020	n:570000
Cons ci ratio: 4.524440e-02	ci left: 1.270407e-02	ci right 1.329388e-02	k: 7408	n:570000
KS ci ratio: 5.296747e-02	ci left: 9.265375e-03	ci right 9.771208e-03	k: 5424	n:570000
PDZD2   570000 perm   279 sec   (2047 perm/sec)   p_kst 9.515789e-03   p_cons 1.299649e-02   p_joint 1.789474e-03

Joint ci ratio: 1.220341e-01	ci left: 1.667468e-03	ci right 1.885833e-03	k: 1029	n:580000
Cons ci ratio: 4.486166e-02	ci left: 1.270153e-02	ci right 1.328611e-02	k: 7535	n:580000
KS ci ratio: 5.246175e-02	ci left: 9.284278e-03	ci right 9.786157e-03	k: 5529	n:580000
PDZD2   580000 perm   285 sec   (2032 perm/sec)   p_kst 9.532759e-03   p_cons 1.299138e-02   p_joint 1.774138e-03

Joint ci ratio: 1.212717e-01	ci left: 1.660569e-03	ci right 1.876574e-03	k: 1042	n:590000
Cons ci ratio: 4.449435e-02	ci left: 1.269575e-02	ci right 1.327515e-02	k: 7660	n:590000
KS ci ratio: 5.204491e-02	ci left: 9.275792e-03	ci right 9.773109e-03	k: 5618	n:590000
PDZD2   590000 perm   292 sec   (2018 perm/sec)   p_kst 9.522034e-03   p_cons 1.298305e-02   p_joint 1.766102e-03

Joint ci ratio: 1.201818e-01	ci left: 1.663603e-03	ci right 1.877920e-03	k: 1061	n:600000
Cons ci ratio: 4.408432e-02	ci left: 1.271985e-02	ci right 1.329487e-02	k: 7803	n:600000
KS ci ratio: 5.169272e-02	ci left: 9.247861e-03	ci right 9.740226e-03	k: 5695	n:600000
PDZD2   600000 perm   299 sec   (2004 perm/sec)   p_kst 9.491667e-03   p_cons 1.300500e-02   p_joint 1.768333e-03

Joint ci ratio: 1.198449e-01	ci left: 1.645871e-03	ci right 1.857267e-03	k: 1067	n:610000
Cons ci ratio: 4.369378e-02	ci left: 1.273832e-02	ci right 1.330894e-02	k: 7943	n:610000
KS ci ratio: 5.137006e-02	ci left: 9.212765e-03	ci right 9.700108e-03	k: 5767	n:610000
PDZD2   610000 perm   306 sec   (1991 perm/sec)   p_kst 9.454098e-03   p_cons 1.302131e-02   p_joint 1.749180e-03

Joint ci ratio: 1.192331e-01	ci left: 1.636536e-03	ci right 1.845584e-03	k: 1078	n:620000
Cons ci ratio: 4.332430e-02	ci left: 1.274983e-02	ci right 1.331602e-02	k: 8079	n:620000
KS ci ratio: 5.091272e-02	ci left: 9.229771e-03	ci right 9.713539e-03	k: 5871	n:620000
PDZD2   620000 perm   314 sec   (1977 perm/sec)   p_kst 9.469355e-03   p_cons 1.303065e-02   p_joint 1.738710e-03

Joint ci ratio: 1.184131e-01	ci left: 1.633661e-03	ci right 1.840806e-03	k: 1093	n:630000
Cons ci ratio: 4.295873e-02	ci left: 1.276414e-02	ci right 1.332607e-02	k: 8217	n:630000
KS ci ratio: 5.046312e-02	ci left: 9.247823e-03	ci right 9.728133e-03	k: 5976	n:630000
PDZD2   630000 perm   321 sec   (1963 perm/sec)   p_kst 9.485714e-03   p_cons 1.304286e-02   p_joint 1.734921e-03

Joint ci ratio: 1.176629e-01	ci left: 1.629364e-03	ci right 1.834564e-03	k: 1107	n:640000
Cons ci ratio: 4.261777e-02	ci left: 1.276874e-02	ci right 1.332630e-02	k: 8349	n:640000
KS ci ratio: 5.008346e-02	ci left: 9.243725e-03	ci right 9.720106e-03	k: 6067	n:640000
PDZD2   640000 perm   328 sec   (1950 perm/sec)   p_kst 9.479688e-03   p_cons 1.304531e-02   p_joint 1.729688e-03

Joint ci ratio: 1.166667e-01	ci left: 1.632671e-03	ci right 1.836427e-03	k: 1126	n:650000
Cons ci ratio: 4.229744e-02	ci left: 1.276561e-02	ci right 1.331874e-02	k: 8476	n:650000
KS ci ratio: 4.972446e-02	ci left: 9.235208e-03	ci right 9.707641e-03	k: 6155	n:650000
PDZD2   650000 perm   336 sec   (1937 perm/sec)   p_kst 9.469231e-03   p_cons 1.304000e-02   p_joint 1.732308e-03

Joint ci ratio: 1.157460e-01	ci left: 1.634413e-03	ci right 1.836667e-03	k: 1144	n:660000
Cons ci ratio: 4.192256e-02	ci left: 1.280008e-02	ci right 1.334966e-02	k: 8628	n:660000
KS ci ratio: 4.931729e-02	ci left: 9.247914e-03	ci right 9.717013e-03	k: 6257	n:660000
PDZD2   660000 perm   343 sec   (1924 perm/sec)   p_kst 9.480303e-03   p_cons 1.307273e-02   p_joint 1.733333e-03

Joint ci ratio: 1.150948e-01	ci left: 1.628862e-03	ci right 1.829217e-03	k: 1157	n:670000
Cons ci ratio: 4.160069e-02	ci left: 1.280694e-02	ci right 1.335250e-02	k: 8762	n:670000
KS ci ratio: 4.893550e-02	ci left: 9.254358e-03	ci right 9.720047e-03	k: 6355	n:670000
PDZD2   670000 perm   351 sec   (1911 perm/sec)   p_kst 9.485075e-03   p_cons 1.307761e-02   p_joint 1.726866e-03

Joint ci ratio: 1.144545e-01	ci left: 1.623476e-03	ci right 1.821984e-03	k: 1170	n:680000
Cons ci ratio: 4.129318e-02	ci left: 1.280926e-02	ci right 1.335079e-02	k: 8893	n:680000
KS ci ratio: 4.859285e-02	ci left: 9.249003e-03	ci right 9.711072e-03	k: 6445	n:680000
PDZD2   680000 perm   358 sec   (1898 perm/sec)   p_kst 9.477941e-03   p_cons 1.307794e-02   p_joint 1.720588e-03

Joint ci ratio: 1.143094e-01	ci left: 1.604170e-03	ci right 1.800051e-03	k: 1173	n:690000
Cons ci ratio: 4.097169e-02	ci left: 1.282443e-02	ci right 1.336228e-02	k: 9033	n:690000
KS ci ratio: 4.822751e-02	ci left: 9.255270e-03	ci right 9.714080e-03	k: 6543	n:690000
PDZD2   690000 perm   366 sec   (1885 perm/sec)   p_kst 9.482609e-03   p_cons 1.309130e-02   p_joint 1.700000e-03

Joint ci ratio: 1.134907e-01	ci left: 1.604847e-03	ci right 1.799314e-03	k: 1190	n:700000
Cons ci ratio: 4.063516e-02	ci left: 1.285333e-02	ci right 1.338786e-02	k: 9183	n:700000
KS ci ratio: 4.792131e-02	ci left: 9.241608e-03	ci right 9.696751e-03	k: 6627	n:700000
PDZD2   700000 perm   374 sec   (1872 perm/sec)   p_kst 9.467143e-03   p_cons 1.311857e-02   p_joint 1.700000e-03

Joint ci ratio: 1.021356e-01	ci left: 1.964652e-03	ci right 2.177472e-03	k: 1469	n:710000
Cons ci ratio: 4.038798e-02	ci left: 1.282983e-02	ci right 1.336007e-02	k: 9296	n:710000
KS ci ratio: 4.706132e-02	ci left: 9.449658e-03	ci right 9.906469e-03	k: 6870	n:710000
PDZD2   710000 perm   382 sec   (1860 perm/sec)   p_kst 9.676056e-03   p_cons 1.309296e-02   p_joint 2.069014e-03

Joint ci ratio: 1.013117e-01	ci left: 1.969851e-03	ci right 2.181410e-03	k: 1493	n:720000
Cons ci ratio: 4.013662e-02	ci left: 1.281250e-02	ci right 1.333865e-02	k: 9413	n:720000
KS ci ratio: 4.670892e-02	ci left: 9.461165e-03	ci right 9.915016e-03	k: 6974	n:720000
PDZD2   720000 perm   390 sec   (1848 perm/sec)   p_kst 9.686111e-03   p_cons 1.307361e-02   p_joint 2.073611e-03

Joint ci ratio: 1.006070e-01	ci left: 1.970907e-03	ci right 2.181021e-03	k: 1514	n:730000
Cons ci ratio: 3.989837e-02	ci left: 1.279023e-02	ci right 1.331227e-02	k: 9526	n:730000
KS ci ratio: 4.638416e-02	ci left: 9.464244e-03	ci right 9.915002e-03	k: 7072	n:730000
PDZD2   730000 perm   398 sec   (1835 perm/sec)   p_kst 9.687671e-03   p_cons 1.304932e-02   p_joint 2.073973e-03

Joint ci ratio: 1.004094e-01	ci left: 1.952177e-03	ci right 2.159860e-03	k: 1520	n:740000
Cons ci ratio: 3.962269e-02	ci left: 1.279533e-02	ci right 1.331389e-02	k: 9659	n:740000
KS ci ratio: 4.607907e-02	ci left: 9.461907e-03	ci right 9.909511e-03	k: 7166	n:740000
PDZD2   740000 perm   406 sec   (1823 perm/sec)   p_kst 9.683784e-03   p_cons 1.305270e-02   p_joint 2.054054e-03

Joint ci ratio: 1.020023e-01	ci left: 1.865063e-03	ci right 2.066815e-03	k: 1473	n:750000
Cons ci ratio: 3.939955e-02	ci left: 1.276994e-02	ci right 1.328449e-02	k: 9769	n:750000
KS ci ratio: 4.575766e-02	ci left: 9.468870e-03	ci right 9.913596e-03	k: 7267	n:750000
PDZD2   750000 perm   414 sec   (1811 perm/sec)   p_kst 9.689333e-03   p_cons 1.302533e-02   p_joint 1.964000e-03

Joint ci ratio: 9.737966e-02	ci left: 2.023999e-03	ci right 2.232456e-03	k: 1616	n:760000
Cons ci ratio: 3.917210e-02	ci left: 1.275044e-02	ci right 1.326117e-02	k: 9883	n:760000
KS ci ratio: 4.548965e-02	ci left: 9.456145e-03	ci right 9.897604e-03	k: 7353	n:760000
PDZD2   760000 perm   422 sec   (1800 perm/sec)   p_kst 9.675000e-03   p_cons 1.300395e-02   p_joint 2.126316e-03

Outputting figure to mutsig2_images.part000000000128/PDZD2.18_8616_760000_0.009675_0.013004_0.0021263.png
                gene_name: PDZD2
               theta_stop: 0.097 
                    nperm: 760000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0095 
       ci_ks_bounds_right: 0.0099 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0022 

Current progress: 3 percent done.
PDE1C
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
Cons ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
KS ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
PDE1C   10000 perm   2 sec   (5278 perm/sec)   p_kst 3.990000e-02   p_cons 1.557000e-01   p_joint 4.580000e-02

Joint ci ratio: 8.768346e-02	ci left: 8.685265e-02	ci right 9.486676e-02	k: 1816	n:20000
Cons ci ratio: 6.871304e-02	ci left: 1.351201e-01	ci right 1.447848e-01	k: 2798	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
PDE1C   20000 perm   4 sec   (4823 perm/sec)   p_kst 4.190000e-02   p_cons 1.399000e-01   p_joint 9.080000e-02

Joint ci ratio: 1.081327e-01	ci left: 3.969301e-02	ci right 4.426290e-02	k: 1258	n:30000
Cons ci ratio: 5.631891e-02	ci left: 1.351037e-01	ci right 1.429663e-01	k: 4170	n:30000
KS ci ratio: 1.097813e-01	ci left: 3.852441e-02	ci right 4.303174e-02	k: 1222	n:30000
PDE1C   30000 perm   6 sec   (4632 perm/sec)   p_kst 4.073333e-02   p_cons 1.390000e-01   p_joint 4.193333e-02

Joint ci ratio: 8.474437e-02	ci left: 4.861924e-02	ci right 5.294627e-02	k: 2030	n:40000
Cons ci ratio: 4.874999e-02	ci left: 1.357473e-01	ci right 1.425552e-01	k: 5565	n:40000
KS ci ratio: 9.570777e-02	ci left: 3.832041e-02	ci right 4.219670e-02	k: 1609	n:40000
PDE1C   40000 perm   9 sec   (4511 perm/sec)   p_kst 4.022500e-02   p_cons 1.391250e-01   p_joint 5.075000e-02

Outputting figure to mutsig2_images.part000000000128/PDE1C.14_1973_40000_0.040225_0.13912_0.05075.png
                gene_name: PDE1C
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 5 percent done.
PDGFRA
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
Cons ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
PDGFRA   10000 perm   2 sec   (5544 perm/sec)   p_kst 1.903000e-01   p_cons 8.994000e-01   p_joint 2.705000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRA.15_3358_10000_0.1903_0.8994_0.2705.png
                gene_name: PDGFRA
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 7 percent done.
PDE10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
PDE10A   10000 perm   2 sec   (5088 perm/sec)   p_kst 2.170000e-02   p_cons 8.679000e-01   p_joint 5.110000e-02

Joint ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
Cons ci ratio: 1.148692e-02	ci left: 8.484723e-01	ci right 8.583247e-01	k: 17069	n:20000
KS ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
PDE10A   20000 perm   4 sec   (4475 perm/sec)   p_kst 2.020000e-02   p_cons 8.534500e-01   p_joint 5.570000e-02

Joint ci ratio: 1.022911e-01	ci left: 4.427469e-02	ci right 4.908026e-02	k: 1399	n:30000
Cons ci ratio: 9.349443e-03	ci left: 8.501893e-01	ci right 8.582086e-01	k: 25627	n:30000
KS ci ratio: 1.572233e-01	ci left: 1.870206e-02	ci right 2.192512e-02	k: 608	n:30000
PDE10A   30000 perm   7 sec   (4374 perm/sec)   p_kst 2.026667e-02   p_cons 8.542333e-01   p_joint 4.663333e-02

Joint ci ratio: 8.177534e-02	ci left: 5.209919e-02	ci right 5.656578e-02	k: 2172	n:40000
Cons ci ratio: 8.141682e-03	ci left: 8.493403e-01	ci right 8.563084e-01	k: 34114	n:40000
KS ci ratio: 1.371109e-01	ci left: 1.865045e-02	ci right 2.141984e-02	k: 800	n:40000
PDE10A   40000 perm   9 sec   (4324 perm/sec)   p_kst 2.000000e-02   p_cons 8.528500e-01   p_joint 5.430000e-02

Joint ci ratio: 8.570372e-02	ci left: 3.843624e-02	ci right 4.189741e-02	k: 2007	n:50000
Cons ci ratio: 7.313107e-03	ci left: 8.486351e-01	ci right 8.548840e-01	k: 42589	n:50000
KS ci ratio: 1.229654e-01	ci left: 1.869381e-02	ci right 2.116237e-02	k: 995	n:50000
PDE10A   50000 perm   12 sec   (4254 perm/sec)   p_kst 1.990000e-02   p_cons 8.517800e-01   p_joint 4.014000e-02

Joint ci ratio: 7.853585e-02	ci left: 3.829881e-02	ci right 4.144590e-02	k: 2391	n:60000
Cons ci ratio: 6.674043e-03	ci left: 8.489821e-01	ci right 8.546838e-01	k: 51111	n:60000
KS ci ratio: 1.132811e-01	ci left: 1.845716e-02	ci right 2.068965e-02	k: 1173	n:60000
PDE10A   60000 perm   14 sec   (4185 perm/sec)   p_kst 1.955000e-02   p_cons 8.518500e-01   p_joint 3.985000e-02

Joint ci ratio: 7.583045e-02	ci left: 3.537531e-02	ci right 3.817754e-02	k: 2573	n:70000
Cons ci ratio: 6.303459e-03	ci left: 8.440527e-01	ci right 8.494042e-01	k: 59272	n:70000
KS ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
PDE10A   70000 perm   17 sec   (4114 perm/sec)   p_kst 2.125714e-02   p_cons 8.467429e-01   p_joint 3.675714e-02

Joint ci ratio: 6.366110e-02	ci left: 4.380764e-02	ci right 4.670046e-02	k: 3619	n:80000
Cons ci ratio: 5.892195e-03	ci left: 8.444111e-01	ci right 8.494137e-01	k: 67754	n:80000
KS ci ratio: 9.434171e-02	ci left: 2.012746e-02	ci right 2.213248e-02	k: 1689	n:80000
PDE10A   80000 perm   20 sec   (4059 perm/sec)   p_kst 2.111250e-02   p_cons 8.469250e-01   p_joint 4.523750e-02

Outputting figure to mutsig2_images.part000000000128/PDE10A.16_2499_80000_0.021112_0.84693_0.045237.png
                gene_name: PDE10A
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 8 percent done.
PDE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
PDE3A   10000 perm   2 sec   (4667 perm/sec)   p_kst 2.329000e-01   p_cons 2.500000e-02   p_joint 6.420000e-02

Joint ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
Cons ci ratio: 1.651402e-01	ci left: 2.513349e-02	ci right 2.970529e-02	k: 547	n:20000
KS ci ratio: 5.088879e-02	ci left: 2.229436e-01	ci right 2.346354e-01	k: 4575	n:20000
PDE3A   20000 perm   5 sec   (4285 perm/sec)   p_kst 2.287500e-01   p_cons 2.735000e-02   p_joint 5.595000e-02

Joint ci ratio: 7.936598e-02	ci left: 7.220770e-02	ci right 7.820821e-02	k: 2255	n:30000
Cons ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
KS ci ratio: 4.154282e-02	ci left: 2.240895e-01	ci right 2.336297e-01	k: 6865	n:30000
PDE3A   30000 perm   7 sec   (4140 perm/sec)   p_kst 2.288333e-01   p_cons 2.796667e-02   p_joint 7.516667e-02

Joint ci ratio: 7.064334e-02	ci left: 6.894449e-02	ci right 7.401794e-02	k: 2858	n:40000
Cons ci ratio: 1.141239e-01	ci left: 2.701267e-02	ci right 3.030623e-02	k: 1145	n:40000
KS ci ratio: 3.598909e-02	ci left: 2.246163e-01	ci right 2.328731e-01	k: 9149	n:40000
PDE3A   40000 perm   10 sec   (4033 perm/sec)   p_kst 2.287250e-01   p_cons 2.862500e-02   p_joint 7.145000e-02

Joint ci ratio: 6.721019e-02	ci left: 6.155507e-02	ci right 6.585576e-02	k: 3184	n:50000
Cons ci ratio: 1.022781e-01	ci left: 2.707842e-02	ci right 3.001665e-02	k: 1426	n:50000
KS ci ratio: 3.226739e-02	ci left: 2.242092e-01	ci right 2.315824e-01	k: 11394	n:50000
PDE3A   50000 perm   13 sec   (3952 perm/sec)   p_kst 2.278800e-01   p_cons 2.852000e-02   p_joint 6.368000e-02

Joint ci ratio: 7.297606e-02	ci left: 4.420645e-02	ci right 4.757099e-02	k: 2752	n:60000
Cons ci ratio: 9.318212e-02	ci left: 2.731339e-02	ci right 2.999912e-02	k: 1718	n:60000
KS ci ratio: 2.882716e-02	ci left: 2.321757e-01	ci right 2.389832e-01	k: 14134	n:60000
PDE3A   60000 perm   15 sec   (3877 perm/sec)   p_kst 2.355667e-01   p_cons 2.863333e-02   p_joint 4.586667e-02

Outputting figure to mutsig2_images.part000000000128/PDE3A.13_3490_60000_0.23557_0.028633_0.045867.png
                gene_name: PDE3A
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 10 percent done.
PDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
Cons ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
KS ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
PDHA2   10000 perm   2 sec   (5426 perm/sec)   p_kst 7.379000e-01   p_cons 2.509000e-01   p_joint 6.692000e-01

Outputting figure to mutsig2_images.part000000000128/PDHA2.13_1171_10000_0.7379_0.2509_0.6692.png
                gene_name: PDHA2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 11 percent done.
PDCD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
Cons ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
KS ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
PDCD11   10000 perm   2 sec   (4258 perm/sec)   p_kst 1.220000e-01   p_cons 2.719000e-01   p_joint 1.638000e-01

Joint ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
Cons ci ratio: 4.542165e-02	ci left: 2.651464e-01	ci right 2.775201e-01	k: 5426	n:20000
KS ci ratio: 7.529283e-02	ci left: 1.148383e-01	ci right 1.238727e-01	k: 2386	n:20000
PDCD11   20000 perm   5 sec   (4045 perm/sec)   p_kst 1.193000e-01   p_cons 2.713000e-01   p_joint 1.020000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD11.12_5756_20000_0.1193_0.2713_0.102.png
                gene_name: PDCD11
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 13 percent done.
PDE11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
Cons ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
PDE11A   10000 perm   2 sec   (5317 perm/sec)   p_kst 8.660000e-01   p_cons 2.533000e-01   p_joint 4.324000e-01

Outputting figure to mutsig2_images.part000000000128/PDE11A.11_3048_10000_0.866_0.2533_0.4324.png
                gene_name: PDE11A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 15 percent done.
PDILT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
Cons ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
KS ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
PDILT   10000 perm   2 sec   (5637 perm/sec)   p_kst 9.424000e-01   p_cons 1.458000e-01   p_joint 5.251000e-01

Outputting figure to mutsig2_images.part000000000128/PDILT.11_1799_10000_0.9424_0.1458_0.5251.png
                gene_name: PDILT
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 16 percent done.
PDE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
Cons ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
KS ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
PDE3B   10000 perm   2 sec   (4953 perm/sec)   p_kst 1.375000e-01   p_cons 1.032000e-01   p_joint 9.980000e-02

Joint ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
Cons ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
KS ci ratio: 6.862754e-02	ci left: 1.354158e-01	ci right 1.450891e-01	k: 2804	n:20000
PDE3B   20000 perm   4 sec   (4621 perm/sec)   p_kst 1.402000e-01   p_cons 9.985000e-02   p_joint 1.111000e-01

Outputting figure to mutsig2_images.part000000000128/PDE3B.9_3403_20000_0.1402_0.09985_0.1111.png
                gene_name: PDE3B
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
PDE6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.229455e-02	ci left: 4.521908e-01	ci right 4.718314e-01	k: 4620	n:10000
Cons ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
KS ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
PDE6A   10000 perm   2 sec   (5198 perm/sec)   p_kst 3.042000e-01   p_cons 7.975000e-01   p_joint 4.620000e-01

Outputting figure to mutsig2_images.part000000000128/PDE6A.9_2671_10000_0.3042_0.7975_0.462.png
                gene_name: PDE6A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 20 percent done.
PDE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
Cons ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
KS ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
PDE1A   10000 perm   2 sec   (5693 perm/sec)   p_kst 2.676000e-01   p_cons 1.185000e-01   p_joint 1.847000e-01

Joint ci ratio: 5.143560e-02	ci left: 2.192280e-01	ci right 2.308520e-01	k: 4500	n:20000
Cons ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
KS ci ratio: 4.582126e-02	ci left: 2.617218e-01	ci right 2.740458e-01	k: 5357	n:20000
PDE1A   20000 perm   4 sec   (5217 perm/sec)   p_kst 2.678500e-01   p_cons 1.328000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000128/PDE1A.8_1742_20000_0.26785_0.1328_0.225.png
                gene_name: PDE1A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
PDGFRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
Cons ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
PDGFRB   10000 perm   2 sec   (5204 perm/sec)   p_kst 4.158000e-01   p_cons 9.730000e-01   p_joint 5.457000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRB.8_3409_10000_0.4158_0.973_0.5457.png
                gene_name: PDGFRB
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 23 percent done.
PDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
Cons ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
KS ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
PDPR   10000 perm   2 sec   (5806 perm/sec)   p_kst 5.381000e-01   p_cons 1.278000e-01   p_joint 2.475000e-01

Joint ci ratio: 4.178776e-02	ci left: 2.991199e-01	ci right 3.119367e-01	k: 6110	n:20000
Cons ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
KS ci ratio: 2.537868e-02	ci left: 5.370163e-01	ci right 5.508709e-01	k: 10879	n:20000
PDPR   20000 perm   4 sec   (5374 perm/sec)   p_kst 5.439500e-01   p_cons 1.250000e-01   p_joint 3.055000e-01

Outputting figure to mutsig2_images.part000000000128/PDPR.8_2708_20000_0.54395_0.125_0.3055.png
                gene_name: PDPR
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
PDE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
Cons ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
KS ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
PDE4B   10000 perm   2 sec   (5618 perm/sec)   p_kst 3.820000e-02   p_cons 1.037000e-01   p_joint 2.800000e-02

Joint ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
Cons ci ratio: 8.354924e-02	ci left: 9.499246e-02	ci right 1.033245e-01	k: 1982	n:20000
KS ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
PDE4B   20000 perm   4 sec   (5128 perm/sec)   p_kst 4.080000e-02   p_cons 9.910000e-02   p_joint 5.800000e-02

Joint ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
Cons ci ratio: 6.918396e-02	ci left: 9.331248e-02	ci right 1.000325e-01	k: 2899	n:30000
KS ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
PDE4B   30000 perm   6 sec   (4954 perm/sec)   p_kst 4.076667e-02   p_cons 9.663333e-02   p_joint 4.553333e-02

Joint ci ratio: 8.818310e-02	ci left: 4.499537e-02	ci right 4.917070e-02	k: 1882	n:40000
Cons ci ratio: 5.957192e-02	ci left: 9.475779e-02	ci right 1.006008e-01	k: 3906	n:40000
KS ci ratio: 9.527697e-02	ci left: 3.866238e-02	ci right 4.255468e-02	k: 1623	n:40000
PDE4B   40000 perm   8 sec   (4810 perm/sec)   p_kst 4.057500e-02   p_cons 9.765000e-02   p_joint 4.705000e-02

Outputting figure to mutsig2_images.part000000000128/PDE4B.7_2633_40000_0.040575_0.09765_0.04705.png
                gene_name: PDE4B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 26 percent done.
PDS5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
Cons ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
KS ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
PDS5A   10000 perm   2 sec   (5270 perm/sec)   p_kst 4.443000e-01   p_cons 5.178000e-01   p_joint 5.790000e-01

Outputting figure to mutsig2_images.part000000000128/PDS5A.7_4175_10000_0.4443_0.5178_0.579.png
                gene_name: PDS5A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 28 percent done.
PDZD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
Cons ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
KS ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
PDZD8   10000 perm   2 sec   (5324 perm/sec)   p_kst 1.006000e-01   p_cons 4.733000e-01   p_joint 1.551000e-01

Joint ci ratio: 6.132228e-02	ci left: 1.644223e-01	ci right 1.748740e-01	k: 3392	n:20000
Cons ci ratio: 2.931447e-02	ci left: 4.650608e-01	ci right 4.789473e-01	k: 9440	n:20000
KS ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
PDZD8   20000 perm   4 sec   (4886 perm/sec)   p_kst 1.000500e-01   p_cons 4.720000e-01   p_joint 1.696000e-01

Outputting figure to mutsig2_images.part000000000128/PDZD8.7_3485_20000_0.10005_0.472_0.1696.png
                gene_name: PDZD8
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 30 percent done.
PDCD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
Cons ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
PDCD4   10000 perm   2 sec   (5901 perm/sec)   p_kst 6.671000e-01   p_cons 9.970000e-02   p_joint 3.129000e-01

Joint ci ratio: 3.963468e-02	ci left: 3.218917e-01	ci right 3.349582e-01	k: 6568	n:20000
Cons ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
KS ci ratio: 1.960661e-02	ci left: 6.599171e-01	ci right 6.730344e-01	k: 13330	n:20000
PDCD4   20000 perm   4 sec   (5448 perm/sec)   p_kst 6.665000e-01   p_cons 9.955000e-02   p_joint 3.284000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD4.6_1468_20000_0.6665_0.09955_0.3284.png
                gene_name: PDCD4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 31 percent done.
PDE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
PDE1B   10000 perm   2 sec   (6034 perm/sec)   p_kst 2.074000e-01   p_cons 5.260000e-02   p_joint 1.468000e-01

Joint ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
Cons ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
KS ci ratio: 5.412034e-02	ci left: 2.021452e-01	ci right 2.134399e-01	k: 4155	n:20000
PDE1B   20000 perm   4 sec   (5465 perm/sec)   p_kst 2.077500e-01   p_cons 5.320000e-02   p_joint 8.985000e-02

Joint ci ratio: 5.894773e-02	ci left: 1.246668e-01	ci right 1.322720e-01	k: 3853	n:30000
Cons ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
KS ci ratio: 4.250314e-02	ci left: 2.161830e-01	ci right 2.256044e-01	k: 6626	n:30000
PDE1B   30000 perm   6 sec   (5239 perm/sec)   p_kst 2.208667e-01   p_cons 5.330000e-02   p_joint 1.284333e-01

Outputting figure to mutsig2_images.part000000000128/PDE1B.6_1724_30000_0.22087_0.0533_0.12843.png
                gene_name: PDE1B
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 33 percent done.
PDGFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
PDGFA   10000 perm   2 sec   (6531 perm/sec)   p_kst 3.088000e-01   p_cons 1.975000e-01   p_joint 2.273000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFA.6_675_10000_0.3088_0.1975_0.2273.png
                gene_name: PDGFA
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 34 percent done.
PDS5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
Cons ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
KS ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
PDS5B   10000 perm   2 sec   (4903 perm/sec)   p_kst 1.949000e-01   p_cons 7.392000e-01   p_joint 3.043000e-01

Outputting figure to mutsig2_images.part000000000128/PDS5B.6_4480_10000_0.1949_0.7392_0.3043.png
                gene_name: PDS5B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
PDYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
PDYN   10000 perm   2 sec   (6154 perm/sec)   p_kst 1.518000e-01   p_cons 5.464000e-01   p_joint 2.286000e-01

Outputting figure to mutsig2_images.part000000000128/PDYN.6_773_10000_0.1518_0.5464_0.2286.png
                gene_name: PDYN
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 38 percent done.
PDE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
Cons ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
KS ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
PDE2A   10000 perm   2 sec   (5375 perm/sec)   p_kst 1.402000e-01   p_cons 1.526000e-01   p_joint 1.976000e-01

Outputting figure to mutsig2_images.part000000000128/PDE2A.5_3048_10000_0.1402_0.1526_0.1976.png
                gene_name: PDE2A
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
PDE6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
PDE6C   10000 perm   2 sec   (5792 perm/sec)   p_kst 6.097000e-01   p_cons 1.399000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000128/PDE6C.5_2665_10000_0.6097_0.1399_0.3927.png
                gene_name: PDE6C
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 41 percent done.
PDE8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
PDE8B   10000 perm   2 sec   (5572 perm/sec)   p_kst 9.143000e-01   p_cons 7.040000e-02   p_joint 3.162000e-01

Joint ci ratio: 4.546188e-02	ci left: 2.647990e-01	ci right 2.771677e-01	k: 5419	n:20000
Cons ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
KS ci ratio: 8.447218e-03	ci left: 9.111004e-01	ci right 9.188785e-01	k: 18301	n:20000
PDE8B   20000 perm   4 sec   (4939 perm/sec)   p_kst 9.150500e-01   p_cons 7.125000e-02   p_joint 2.709500e-01

Joint ci ratio: 3.537223e-02	ci left: 2.853002e-01	ci right 2.956071e-01	k: 8713	n:30000
Cons ci ratio: 8.151533e-02	ci left: 6.864201e-02	ci right 7.450795e-02	k: 2146	n:30000
KS ci ratio: 6.848532e-03	ci left: 9.129396e-01	ci right 9.192462e-01	k: 27484	n:30000
PDE8B   30000 perm   6 sec   (4757 perm/sec)   p_kst 9.161333e-01   p_cons 7.153333e-02   p_joint 2.904333e-01

Outputting figure to mutsig2_images.part000000000128/PDE8B.5_2746_30000_0.91613_0.071533_0.29043.png
                gene_name: PDE8B
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
PDZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
Cons ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
PDZD7   10000 perm   2 sec   (5739 perm/sec)   p_kst 7.350000e-02   p_cons 1.859000e-01   p_joint 8.070000e-02

Joint ci ratio: 6.602120e-02	ci left: 1.448802e-01	ci right 1.548218e-01	k: 2996	n:20000
Cons ci ratio: 5.770953e-02	ci left: 1.820125e-01	ci right 1.928785e-01	k: 3748	n:20000
KS ci ratio: 1.007218e-01	ci left: 6.684339e-02	ci right 7.398211e-02	k: 1407	n:20000
PDZD7   20000 perm   4 sec   (5269 perm/sec)   p_kst 7.035000e-02   p_cons 1.874000e-01   p_joint 1.498000e-01

Joint ci ratio: 5.779189e-02	ci left: 1.291106e-01	ci right 1.368273e-01	k: 3988	n:30000
Cons ci ratio: 4.699903e-02	ci left: 1.837906e-01	ci right 1.926698e-01	k: 5646	n:30000
KS ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
PDZD7   30000 perm   6 sec   (5080 perm/sec)   p_kst 6.833333e-02   p_cons 1.882000e-01   p_joint 1.329333e-01

Outputting figure to mutsig2_images.part000000000128/PDZD7.5_1590_30000_0.068333_0.1882_0.13293.png
                gene_name: PDZD7
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 44 percent done.
PDCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
PDCD2   10000 perm   1 sec   (6769 perm/sec)   p_kst 3.108000e-01   p_cons 7.170000e-02   p_joint 1.312000e-01

Joint ci ratio: 5.754901e-02	ci left: 1.828529e-01	ci right 1.937378e-01	k: 3765	n:20000
Cons ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
KS ci ratio: 4.197559e-02	ci left: 2.972314e-01	ci right 3.100258e-01	k: 6072	n:20000
PDCD2   20000 perm   3 sec   (6159 perm/sec)   p_kst 3.036000e-01   p_cons 7.040000e-02   p_joint 1.882500e-01

Joint ci ratio: 4.870139e-02	ci left: 1.732570e-01	ci right 1.819388e-01	k: 5327	n:30000
Cons ci ratio: 8.176170e-02	ci left: 6.824959e-02	ci right 7.410046e-02	k: 2134	n:30000
KS ci ratio: 3.427431e-02	ci left: 2.983994e-01	ci right 3.088387e-01	k: 9108	n:30000
PDCD2   30000 perm   5 sec   (5881 perm/sec)   p_kst 3.036000e-01   p_cons 7.113333e-02   p_joint 1.775667e-01

Outputting figure to mutsig2_images.part000000000128/PDCD2.4_1088_30000_0.3036_0.071133_0.17757.png
                gene_name: PDCD2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
PDE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
Cons ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
KS ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
PDE4A   10000 perm   2 sec   (5788 perm/sec)   p_kst 6.222000e-01   p_cons 2.155000e-01   p_joint 5.812000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4A.4_3178_10000_0.6222_0.2155_0.5812.png
                gene_name: PDE4A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 48 percent done.
PDE4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
PDE4D   10000 perm   2 sec   (5359 perm/sec)   p_kst 2.993000e-01   p_cons 1.264000e-01   p_joint 4.010000e-01

Joint ci ratio: 4.257878e-02	ci left: 2.912684e-01	ci right 3.039905e-01	k: 5952	n:20000
Cons ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
KS ci ratio: 4.397365e-02	ci left: 2.780552e-01	ci right 2.906076e-01	k: 5686	n:20000
PDE4D   20000 perm   4 sec   (4999 perm/sec)   p_kst 2.843000e-01   p_cons 1.264000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4D.4_2821_20000_0.2843_0.1264_0.2976.png
                gene_name: PDE4D
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 49 percent done.
PDE6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
Cons ci ratio: 1.476486e-02	ci left: 8.691762e-01	ci right 8.822040e-01	k: 8758	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
PDE6B   10000 perm   2 sec   (6239 perm/sec)   p_kst 8.340000e-02   p_cons 8.758000e-01   p_joint 1.495000e-01

Joint ci ratio: 6.142041e-02	ci left: 1.639778e-01	ci right 1.744185e-01	k: 3383	n:20000
Cons ci ratio: 1.041291e-02	ci left: 8.717081e-01	ci right 8.808822e-01	k: 17527	n:20000
KS ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
PDE6B   20000 perm   4 sec   (5519 perm/sec)   p_kst 8.675000e-02   p_cons 8.763500e-01   p_joint 1.691500e-01

Outputting figure to mutsig2_images.part000000000128/PDE6B.4_2653_20000_0.08675_0.87635_0.16915.png
                gene_name: PDE6B
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 51 percent done.
PDGFD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
PDGFD   10000 perm   1 sec   (6990 perm/sec)   p_kst 2.290000e-02   p_cons 3.598000e-01   p_joint 7.270000e-02

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 3.719196e-02	ci left: 3.504059e-01	ci right 3.637357e-01	k: 7141	n:20000
KS ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
PDGFD   20000 perm   3 sec   (6141 perm/sec)   p_kst 2.125000e-02   p_cons 3.570500e-01   p_joint 1.180000e-01

Joint ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
Cons ci ratio: 3.022432e-02	ci left: 3.538014e-01	ci right 3.646925e-01	k: 10777	n:30000
KS ci ratio: 1.530433e-01	ci left: 1.976016e-02	ci right 2.306676e-02	k: 641	n:30000
PDGFD   30000 perm   5 sec   (5906 perm/sec)   p_kst 2.136667e-02   p_cons 3.592333e-01   p_joint 4.413333e-02

Joint ci ratio: 9.152281e-02	ci left: 4.183960e-02	ci right 4.587696e-02	k: 1753	n:40000
Cons ci ratio: 2.550720e-02	ci left: 3.664874e-01	ci right 3.759813e-01	k: 14849	n:40000
KS ci ratio: 1.330170e-01	ci left: 1.983485e-02	ci right 2.268524e-02	k: 849	n:40000
PDGFD   40000 perm   7 sec   (5690 perm/sec)   p_kst 2.122500e-02   p_cons 3.712250e-01   p_joint 4.382500e-02

Joint ci ratio: 9.752579e-02	ci left: 2.977147e-02	ci right 3.284327e-02	k: 1564	n:50000
Cons ci ratio: 2.327127e-02	ci left: 3.578057e-01	ci right 3.662503e-01	k: 18101	n:50000
KS ci ratio: 1.183781e-01	ci left: 2.018823e-02	ci right 2.274774e-02	k: 1072	n:50000
PDGFD   50000 perm   9 sec   (5523 perm/sec)   p_kst 2.144000e-02   p_cons 3.620200e-01   p_joint 3.128000e-02

Joint ci ratio: 9.271123e-02	ci left: 2.759032e-02	ci right 3.028883e-02	k: 1735	n:60000
Cons ci ratio: 2.121793e-02	ci left: 3.587350e-01	ci right 3.664449e-01	k: 21755	n:60000
KS ci ratio: 1.081758e-01	ci left: 2.025693e-02	ci right 2.258968e-02	k: 1284	n:60000
PDGFD   60000 perm   11 sec   (5394 perm/sec)   p_kst 2.140000e-02   p_cons 3.625833e-01   p_joint 2.891667e-02

Joint ci ratio: 7.732418e-02	ci left: 3.404323e-02	ci right 3.679545e-02	k: 2478	n:70000
Cons ci ratio: 1.961306e-02	ci left: 3.597500e-01	ci right 3.668899e-01	k: 25432	n:70000
KS ci ratio: 1.017286e-01	ci left: 1.971374e-02	ci right 2.184053e-02	k: 1453	n:70000
PDGFD   70000 perm   13 sec   (5292 perm/sec)   p_kst 2.075714e-02   p_cons 3.633143e-01   p_joint 3.540000e-02

Joint ci ratio: 8.361672e-02	ci left: 2.561836e-02	ci right 2.786614e-02	k: 2138	n:80000
Cons ci ratio: 1.835441e-02	ci left: 3.597789e-01	ci right 3.664561e-01	k: 29049	n:80000
KS ci ratio: 9.547324e-02	ci left: 1.965130e-02	ci right 2.163367e-02	k: 1650	n:80000
PDGFD   80000 perm   15 sec   (5192 perm/sec)   p_kst 2.062500e-02   p_cons 3.631125e-01   p_joint 2.672500e-02

Outputting figure to mutsig2_images.part000000000128/PDGFD.4_1141_80000_0.020625_0.36311_0.026725.png
                gene_name: PDGFD
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 52 percent done.
PDHX
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
Cons ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
KS ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
PDHX   10000 perm   1 sec   (6881 perm/sec)   p_kst 7.240000e-01   p_cons 1.570000e-01   p_joint 4.763000e-01

Outputting figure to mutsig2_images.part000000000128/PDHX.3_1669_10000_0.724_0.157_0.4763.png
                gene_name: PDHX
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 54 percent done.
PDIA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
KS ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
PDIA5   10000 perm   1 sec   (7262 perm/sec)   p_kst 3.041000e-01   p_cons 1.950000e-02   p_joint 7.990000e-02

Joint ci ratio: 9.566350e-02	ci left: 7.373314e-02	ci right 8.119025e-02	k: 1548	n:20000
Cons ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
KS ci ratio: 4.169441e-02	ci left: 3.000642e-01	ci right 3.128921e-01	k: 6129	n:20000
PDIA5   20000 perm   3 sec   (6324 perm/sec)   p_kst 3.064500e-01   p_cons 2.060000e-02   p_joint 7.740000e-02

Joint ci ratio: 8.818052e-02	ci left: 5.906845e-02	ci right 6.455012e-02	k: 1853	n:30000
Cons ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
KS ci ratio: 3.389183e-02	ci left: 3.031429e-01	ci right 3.136276e-01	k: 9251	n:30000
PDIA5   30000 perm   5 sec   (5974 perm/sec)   p_kst 3.083667e-01   p_cons 2.000000e-02   p_joint 6.176667e-02

Joint ci ratio: 8.536609e-02	ci left: 4.793339e-02	ci right 5.223222e-02	k: 2002	n:40000
Cons ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
KS ci ratio: 2.927226e-02	ci left: 3.049960e-01	ci right 3.140816e-01	k: 12381	n:40000
PDIA5   40000 perm   7 sec   (5778 perm/sec)   p_kst 3.095250e-01   p_cons 2.042500e-02   p_joint 5.005000e-02

Joint ci ratio: 6.667518e-02	ci left: 6.250004e-02	ci right 6.683067e-02	k: 3232	n:50000
Cons ci ratio: 1.213590e-01	ci left: 1.919822e-02	ci right 2.169789e-02	k: 1021	n:50000
KS ci ratio: 2.625251e-02	ci left: 3.043332e-01	ci right 3.124490e-01	k: 15419	n:50000
PDIA5   50000 perm   9 sec   (5620 perm/sec)   p_kst 3.083800e-01   p_cons 2.042000e-02   p_joint 6.464000e-02

Joint ci ratio: 5.906008e-02	ci left: 6.637631e-02	ci right 7.043223e-02	k: 4103	n:60000
Cons ci ratio: 1.110351e-01	ci left: 1.921893e-02	ci right 2.149447e-02	k: 1220	n:60000
KS ci ratio: 2.394458e-02	ci left: 3.050545e-01	ci right 3.124640e-01	k: 18525	n:60000
PDIA5   60000 perm   11 sec   (5501 perm/sec)   p_kst 3.087500e-01   p_cons 2.033333e-02   p_joint 6.838333e-02

Joint ci ratio: 5.491954e-02	ci left: 6.597662e-02	ci right 6.971644e-02	k: 4748	n:70000
Cons ci ratio: 1.023049e-01	ci left: 1.949089e-02	ci right 2.160626e-02	k: 1437	n:70000
KS ci ratio: 2.247376e-02	ci left: 2.995397e-01	ci right 3.063623e-01	k: 21206	n:70000
PDIA5   70000 perm   13 sec   (5391 perm/sec)   p_kst 3.029429e-01   p_cons 2.052857e-02   p_joint 6.782857e-02

Joint ci ratio: 4.470353e-02	ci left: 8.572391e-02	ci right 8.965605e-02	k: 7014	n:80000
Cons ci ratio: 9.571028e-02	ci left: 1.955365e-02	ci right 2.153134e-02	k: 1642	n:80000
KS ci ratio: 2.107189e-02	ci left: 2.987696e-01	ci right 3.051448e-01	k: 24156	n:80000
PDIA5   80000 perm   15 sec   (5287 perm/sec)   p_kst 3.019500e-01   p_cons 2.052500e-02   p_joint 8.767500e-02

Outputting figure to mutsig2_images.part000000000128/PDIA5.4_1628_80000_0.30195_0.020525_0.087675.png
                gene_name: PDIA5
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.090 

Current progress: 56 percent done.
PDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
Cons ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
PDK1   10000 perm   2 sec   (5976 perm/sec)   p_kst 4.320000e-02   p_cons 2.376000e-01   p_joint 5.550000e-02

Joint ci ratio: 8.565064e-02	ci left: 9.072523e-02	ci right 9.889301e-02	k: 1895	n:20000
Cons ci ratio: 4.975483e-02	ci left: 2.309219e-01	ci right 2.427547e-01	k: 4736	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
PDK1   20000 perm   4 sec   (5552 perm/sec)   p_kst 4.085000e-02   p_cons 2.368000e-01   p_joint 9.475000e-02

Joint ci ratio: 1.020619e-01	ci left: 4.446981e-02	ci right 4.928509e-02	k: 1405	n:30000
Cons ci ratio: 4.076952e-02	ci left: 2.307408e-01	ci right 2.403772e-01	k: 7066	n:30000
KS ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
PDK1   30000 perm   6 sec   (5334 perm/sec)   p_kst 4.123333e-02   p_cons 2.355333e-01   p_joint 4.683333e-02

Joint ci ratio: 8.840504e-02	ci left: 4.477511e-02	ci right 4.894099e-02	k: 1873	n:40000
Cons ci ratio: 3.526506e-02	ci left: 2.318207e-01	ci right 2.401676e-01	k: 9439	n:40000
KS ci ratio: 9.386996e-02	ci left: 3.981070e-02	ci right 4.375618e-02	k: 1670	n:40000
PDK1   40000 perm   8 sec   (5168 perm/sec)   p_kst 4.175000e-02   p_cons 2.359750e-01   p_joint 4.682500e-02

Outputting figure to mutsig2_images.part000000000128/PDK1.4_1355_40000_0.04175_0.23597_0.046825.png
                gene_name: PDK1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 57 percent done.
PDLIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
Cons ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
KS ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
PDLIM3   10000 perm   1 sec   (6688 perm/sec)   p_kst 2.961000e-01   p_cons 1.479000e-01   p_joint 2.211000e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM3.4_1319_10000_0.2961_0.1479_0.2211.png
                gene_name: PDLIM3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 59 percent done.
PDCD1LG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
Cons ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
KS ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
PDCD1LG2   10000 perm   1 sec   (6992 perm/sec)   p_kst 9.690000e-02   p_cons 3.573000e-01   p_joint 2.100000e-01

Joint ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
Cons ci ratio: 3.713533e-02	ci left: 3.511029e-01	ci right 3.644385e-01	k: 7155	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
PDCD1LG2   20000 perm   3 sec   (6366 perm/sec)   p_kst 9.830000e-02   p_cons 3.577500e-01   p_joint 1.629500e-01

Outputting figure to mutsig2_images.part000000000128/PDCD1LG2.3_846_20000_0.0983_0.35775_0.16295.png
                gene_name: PDCD1LG2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
PDE7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
Cons ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
KS ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
PDE7B   10000 perm   2 sec   (6572 perm/sec)   p_kst 8.983000e-01   p_cons 3.085000e-01   p_joint 6.497000e-01

Outputting figure to mutsig2_images.part000000000128/PDE7B.3_1405_10000_0.8983_0.3085_0.6497.png
                gene_name: PDE7B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 62 percent done.
PDE8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
Cons ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
KS ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
PDE8A   10000 perm   2 sec   (6176 perm/sec)   p_kst 2.544000e-01   p_cons 1.712000e-01   p_joint 1.365000e-01

Outputting figure to mutsig2_images.part000000000128/PDE8A.3_2578_10000_0.2544_0.1712_0.1365.png
                gene_name: PDE8A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 64 percent done.
PDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
Cons ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
PDHA1   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.715000e-01   p_cons 1.638000e-01   p_joint 9.738000e-01

Outputting figure to mutsig2_images.part000000000128/PDHA1.3_1356_10000_0.4715_0.1638_0.9738.png
                gene_name: PDHA1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 66 percent done.
PDIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
KS ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
PDIA4   10000 perm   2 sec   (6322 perm/sec)   p_kst 1.864000e-01   p_cons 4.210000e-02   p_joint 3.424000e-01

Joint ci ratio: 5.345536e-02	ci left: 2.062041e-01	ci right 2.175798e-01	k: 4237	n:20000
Cons ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
KS ci ratio: 5.834242e-02	ci left: 1.787499e-01	ci right 1.895421e-01	k: 3682	n:20000
PDIA4   20000 perm   3 sec   (5838 perm/sec)   p_kst 1.841000e-01   p_cons 4.135000e-02   p_joint 2.118500e-01

Joint ci ratio: 4.292742e-02	ci left: 2.128095e-01	ci right 2.221786e-01	k: 6524	n:30000
Cons ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
KS ci ratio: 4.738708e-02	ci left: 1.813136e-01	ci right 1.901474e-01	k: 5571	n:30000
PDIA4   30000 perm   5 sec   (5581 perm/sec)   p_kst 1.857000e-01   p_cons 4.203333e-02   p_joint 2.174667e-01

Joint ci ratio: 4.839204e-02	ci left: 1.375041e-01	ci right 1.443481e-01	k: 5636	n:40000
Cons ci ratio: 9.352007e-02	ci left: 4.010395e-02	ci right 4.406287e-02	k: 1682	n:40000
KS ci ratio: 4.117241e-02	ci left: 1.809324e-01	ci right 1.885634e-01	k: 7389	n:40000
PDIA4   40000 perm   7 sec   (5426 perm/sec)   p_kst 1.847250e-01   p_cons 4.205000e-02   p_joint 1.409000e-01

Outputting figure to mutsig2_images.part000000000128/PDIA4.3_1978_40000_0.18473_0.04205_0.1409.png
                gene_name: PDIA4
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
PDIA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
KS ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
PDIA6   10000 perm   1 sec   (6687 perm/sec)   p_kst 6.340000e-01   p_cons 7.477000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDIA6.3_1375_10000_0.634_0.7477_1.png
                gene_name: PDIA6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PDLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
Cons ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KS ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
PDLIM1   10000 perm   1 sec   (6763 perm/sec)   p_kst 7.690000e-01   p_cons 6.256000e-01   p_joint 7.596000e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM1.3_1018_10000_0.769_0.6256_0.7596.png
                gene_name: PDLIM1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 70 percent done.
PDSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
Cons ci ratio: 1.030745e-02	ci left: 9.304039e-01	ci right 9.401406e-01	k: 9354	n:10000
KS ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
PDSS1   10000 perm   2 sec   (6232 perm/sec)   p_kst 5.050000e-02   p_cons 9.354000e-01   p_joint 6.450000e-02

Joint ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
Cons ci ratio: 7.195599e-03	ci left: 9.334413e-01	ci right 9.402310e-01	k: 18738	n:20000
KS ci ratio: 1.215897e-01	ci left: 4.638886e-02	ci right 5.244300e-02	k: 987	n:20000
PDSS1   20000 perm   3 sec   (5959 perm/sec)   p_kst 4.935000e-02   p_cons 9.369000e-01   p_joint 8.175000e-02

Joint ci ratio: 7.965267e-02	ci left: 7.171689e-02	ci right 7.769912e-02	k: 2240	n:30000
Cons ci ratio: 5.823121e-03	ci left: 9.351437e-01	ci right 9.406377e-01	k: 28138	n:30000
KS ci ratio: 9.970367e-02	ci left: 4.655183e-02	ci right 5.146931e-02	k: 1469	n:30000
PDSS1   30000 perm   5 sec   (5708 perm/sec)   p_kst 4.896667e-02   p_cons 9.379333e-01   p_joint 7.466667e-02

Outputting figure to mutsig2_images.part000000000128/PDSS1.3_1296_30000_0.048967_0.93793_0.074667.png
                gene_name: PDSS1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 72 percent done.
PDSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
Cons ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
KS ci ratio: 2.618745e-02	ci left: 6.822418e-01	ci right 7.004466e-01	k: 6914	n:10000
PDSS2   10000 perm   2 sec   (6478 perm/sec)   p_kst 6.914000e-01   p_cons 7.650000e-01   p_joint 8.641000e-01

Outputting figure to mutsig2_images.part000000000128/PDSS2.3_1232_10000_0.6914_0.765_0.8641.png
                gene_name: PDSS2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 74 percent done.
PDZD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
Cons ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
PDZD4   10000 perm   2 sec   (5593 perm/sec)   p_kst 5.140000e-02   p_cons 3.330000e-01   p_joint 1.568000e-01

Joint ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
Cons ci ratio: 3.937113e-02	ci left: 3.248265e-01	ci right 3.379226e-01	k: 6627	n:20000
KS ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
PDZD4   20000 perm   4 sec   (5347 perm/sec)   p_kst 5.235000e-02   p_cons 3.313500e-01   p_joint 7.765000e-02

Joint ci ratio: 7.887557e-02	ci left: 7.305854e-02	ci right 7.909053e-02	k: 2281	n:30000
Cons ci ratio: 3.213190e-02	ci left: 3.262393e-01	ci right 3.369267e-01	k: 9947	n:30000
KS ci ratio: 9.630694e-02	ci left: 4.980752e-02	ci right 5.487962e-02	k: 1569	n:30000
PDZD4   30000 perm   6 sec   (5202 perm/sec)   p_kst 5.230000e-02   p_cons 3.315667e-01   p_joint 7.603333e-02

Outputting figure to mutsig2_images.part000000000128/PDZD4.3_2342_30000_0.0523_0.33157_0.076033.png
                gene_name: PDZD4
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 75 percent done.
PDCD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
PDCD10   10000 perm   1 sec   (7295 perm/sec)   p_kst 3.261000e-01   p_cons 8.300000e-01   p_joint 5.638000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD10.2_667_10000_0.3261_0.83_0.5638.png
                gene_name: PDCD10
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 77 percent done.
PDCD6IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
Cons ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
PDCD6IP   10000 perm   2 sec   (6255 perm/sec)   p_kst 8.943000e-01   p_cons 6.299000e-01   p_joint 9.460000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD6IP.2_2694_10000_0.8943_0.6299_0.946.png
                gene_name: PDCD6IP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 79 percent done.
PDCL3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
PDE4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
Cons ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
PDE4C   10000 perm   2 sec   (6319 perm/sec)   p_kst 1.908000e-01   p_cons 8.658000e-01   p_joint 5.402000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4C.2_2349_10000_0.1908_0.8658_0.5402.png
                gene_name: PDE4C
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 82 percent done.
PDE6G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
KS ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
PDE6G   10000 perm   1 sec   (7515 perm/sec)   p_kst 7.011000e-01   p_cons 4.250000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE6G.2_276_10000_0.7011_0.425_1.png
                gene_name: PDE6G
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PDE7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.112780e-02	ci left: 7.665848e-01	ci right 7.830548e-01	k: 7749	n:10000
Cons ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
KS ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
PDE7A   10000 perm   1 sec   (6771 perm/sec)   p_kst 2.516000e-01   p_cons 9.422000e-01   p_joint 7.749000e-01

Outputting figure to mutsig2_images.part000000000128/PDE7A.2_1597_10000_0.2516_0.9422_0.7749.png
                gene_name: PDE7A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 85 percent done.
PDE9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
KS ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
PDE9A   10000 perm   1 sec   (6894 perm/sec)   p_kst 7.345000e-01   p_cons 9.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE9A.2_1942_10000_0.7345_0.9707_1.png
                gene_name: PDE9A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PDGFRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
KS ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
PDGFRL   10000 perm   1 sec   (7110 perm/sec)   p_kst 4.719000e-01   p_cons 6.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDGFRL.2_1152_10000_0.4719_0.6115_1.png
                gene_name: PDGFRL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PDIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
Cons ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
KS ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
PDIA2   10000 perm   1 sec   (7130 perm/sec)   p_kst 8.240000e-01   p_cons 1.754000e-01   p_joint 2.487000e-01

Outputting figure to mutsig2_images.part000000000128/PDIA2.2_1622_10000_0.824_0.1754_0.2487.png
                gene_name: PDIA2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 90 percent done.
PDIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
Cons ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
KS ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
PDIA3   10000 perm   1 sec   (7274 perm/sec)   p_kst 1.715000e-01   p_cons 1.011000e-01   p_joint 4.059000e-01

Joint ci ratio: 1.275125e-02	ci left: 8.200160e-01	ci right 8.305893e-01	k: 16507	n:20000
Cons ci ratio: 8.224334e-02	ci left: 9.778957e-02	ci right 1.062265e-01	k: 2039	n:20000
KS ci ratio: 6.063483e-02	ci left: 1.675831e-01	ci right 1.781122e-01	k: 3456	n:20000
PDIA3   20000 perm   3 sec   (6453 perm/sec)   p_kst 1.728000e-01   p_cons 1.019500e-01   p_joint 8.253500e-01

Outputting figure to mutsig2_images.part000000000128/PDIA3.2_1570_20000_0.1728_0.10195_0.82535.png
                gene_name: PDIA3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 92 percent done.
PDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
Cons ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
KS ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
PDK2   10000 perm   1 sec   (7620 perm/sec)   p_kst 6.990000e-01   p_cons 8.360000e-02   p_joint 1.018000e-01

Joint ci ratio: 6.533036e-02	ci left: 1.475434e-01	ci right 1.575579e-01	k: 3050	n:20000
Cons ci ratio: 9.041959e-02	ci left: 8.200290e-02	ci right 8.981798e-02	k: 1717	n:20000
KS ci ratio: 1.821472e-02	ci left: 6.919859e-01	ci right 7.047564e-01	k: 13968	n:20000
PDK2   20000 perm   3 sec   (6720 perm/sec)   p_kst 6.984000e-01   p_cons 8.585000e-02   p_joint 1.525000e-01

Outputting figure to mutsig2_images.part000000000128/PDK2.2_1268_20000_0.6984_0.08585_0.1525.png
                gene_name: PDK2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
PDK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
PDK3   10000 perm   1 sec   (7180 perm/sec)   p_kst 7.714000e-01   p_cons 7.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDK3.2_1300_10000_0.7714_0.7851_1.png
                gene_name: PDK3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
Cons ci ratio: 1.849773e-02	ci left: 8.101938e-01	ci right 8.254206e-01	k: 8179	n:10000
KS ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
PDP1   10000 perm   1 sec   (7036 perm/sec)   p_kst 5.063000e-01   p_cons 8.179000e-01   p_joint 9.503000e-01

Outputting figure to mutsig2_images.part000000000128/PDP1.2_1799_10000_0.5063_0.8179_0.9503.png
                gene_name: PDP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 97 percent done.
PDXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118844e-02	ci left: 4.653707e-01	ci right 4.850438e-01	k: 4752	n:10000
Cons ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
KS ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
PDXDC1   10000 perm   1 sec   (6743 perm/sec)   p_kst 5.795000e-01   p_cons 4.410000e-01   p_joint 4.752000e-01

Outputting figure to mutsig2_images.part000000000128/PDXDC1.2_2459_10000_0.5795_0.441_0.4752.png
                gene_name: PDXDC1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
PDZD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
PDZD9   10000 perm   1 sec   (7372 perm/sec)   p_kst 2.809000e-01   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
Cons ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
KS ci ratio: 4.421255e-02	ci left: 2.758702e-01	ci right 2.883932e-01	k: 5642	n:20000
PDZD9   20000 perm   3 sec   (6516 perm/sec)   p_kst 2.821000e-01   p_cons 4.500000e-04   p_joint 4.500000e-04

Joint ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
Cons ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
KS ci ratio: 3.613960e-02	ci left: 2.765813e-01	ci right 2.867943e-01	k: 8450	n:30000
PDZD9   30000 perm   5 sec   (6166 perm/sec)   p_kst 2.816667e-01   p_cons 4.000000e-04   p_joint 4.000000e-04

Joint ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
Cons ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
KS ci ratio: 3.127080e-02	ci left: 2.776187e-01	ci right 2.864630e-01	k: 11281	n:40000
PDZD9   40000 perm   7 sec   (5928 perm/sec)   p_kst 2.820250e-01   p_cons 6.500000e-04   p_joint 2.250000e-04

Joint ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
Cons ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
KS ci ratio: 2.797568e-02	ci left: 2.779989e-01	ci right 2.859064e-01	k: 14097	n:50000
PDZD9   50000 perm   9 sec   (5779 perm/sec)   p_kst 2.819400e-01   p_cons 6.600000e-04   p_joint 2.200000e-04

Joint ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
Cons ci ratio: 5.975752e-01	ci left: 5.045436e-04	ci right 9.460802e-04	k: 42	n:60000
KS ci ratio: 2.546544e-02	ci left: 2.794975e-01	ci right 2.867235e-01	k: 16986	n:60000
PDZD9   60000 perm   11 sec   (5656 perm/sec)   p_kst 2.831000e-01   p_cons 7.000000e-04   p_joint 5.000000e-04

Joint ci ratio: 6.822187e-01	ci left: 3.127057e-04	ci right 6.452886e-04	k: 32	n:70000
Cons ci ratio: 5.841671e-01	ci left: 4.567570e-04	ci right 8.437370e-04	k: 44	n:70000
KS ci ratio: 2.353432e-02	ci left: 2.804905e-01	ci right 2.871845e-01	k: 19868	n:70000
PDZD9   70000 perm   13 sec   (5535 perm/sec)   p_kst 2.838286e-01   p_cons 6.285714e-04   p_joint 4.571429e-04

Joint ci ratio: 6.196476e-01	ci left: 3.466824e-04	ci right 6.663689e-04	k: 39	n:80000
Cons ci ratio: 5.434261e-01	ci left: 4.746963e-04	ci right 8.381106e-04	k: 51	n:80000
KS ci ratio: 2.198556e-02	ci left: 2.812381e-01	ci right 2.875025e-01	k: 22749	n:80000
PDZD9   80000 perm   15 sec   (5434 perm/sec)   p_kst 2.843625e-01   p_cons 6.375000e-04   p_joint 4.875000e-04

Joint ci ratio: 5.908145e-01	ci left: 3.457911e-04	ci right 6.435102e-04	k: 43	n:90000
Cons ci ratio: 5.058983e-01	ci left: 4.990756e-04	ci right 8.455385e-04	k: 59	n:90000
KS ci ratio: 2.068794e-02	ci left: 2.822073e-01	ci right 2.881177e-01	k: 25664	n:90000
PDZD9   90000 perm   17 sec   (5318 perm/sec)   p_kst 2.851556e-01   p_cons 6.555556e-04   p_joint 4.777778e-04

Joint ci ratio: 5.656646e-01	ci left: 3.453581e-04	ci right 6.249519e-04	k: 47	n:100000
Cons ci ratio: 4.898407e-01	ci left: 4.841422e-04	ci right 8.059727e-04	k: 63	n:100000
KS ci ratio: 1.963530e-02	ci left: 2.821735e-01	ci right 2.877790e-01	k: 28497	n:100000
PDZD9   100000 perm   19 sec   (5225 perm/sec)   p_kst 2.849700e-01   p_cons 6.300000e-04   p_joint 4.700000e-04

Joint ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
Cons ci ratio: 4.465671e-01	ci left: 5.443952e-04	ci right 8.647006e-04	k: 76	n:110000
KS ci ratio: 1.873816e-02	ci left: 2.819437e-01	ci right 2.872858e-01	k: 31307	n:110000
PDZD9   110000 perm   22 sec   (5096 perm/sec)   p_kst 2.846091e-01   p_cons 6.909091e-04   p_joint 5.181818e-04

Joint ci ratio: 7.039589e-01	ci left: 1.686801e-04	ci right 3.568715e-04	k: 30	n:120000
Cons ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
KS ci ratio: 1.795592e-02	ci left: 2.817073e-01	ci right 2.868198e-01	k: 34111	n:120000
PDZD9   120000 perm   24 sec   (4998 perm/sec)   p_kst 2.842583e-01   p_cons 7.250000e-04   p_joint 2.500000e-04

Joint ci ratio: 6.532404e-01	ci left: 1.875360e-04	ci right 3.744151e-04	k: 35	n:130000
Cons ci ratio: 4.020350e-01	ci left: 5.843581e-04	ci right 8.847914e-04	k: 94	n:130000
KS ci ratio: 1.721201e-02	ci left: 2.827389e-01	ci right 2.876553e-01	k: 37075	n:130000
PDZD9   130000 perm   27 sec   (4901 perm/sec)   p_kst 2.851923e-01   p_cons 7.230769e-04   p_joint 2.692308e-04

Joint ci ratio: 6.358194e-01	ci left: 1.860881e-04	ci right 3.642648e-04	k: 37	n:140000
Cons ci ratio: 3.938341e-01	ci left: 5.683292e-04	ci right 8.530105e-04	k: 98	n:140000
KS ci ratio: 1.657749e-02	ci left: 2.830353e-01	ci right 2.877736e-01	k: 39956	n:140000
PDZD9   140000 perm   29 sec   (4812 perm/sec)   p_kst 2.854000e-01   p_cons 7.000000e-04   p_joint 2.642857e-04

Joint ci ratio: 6.276187e-01	ci left: 1.792798e-04	ci right 3.477034e-04	k: 38	n:150000
Cons ci ratio: 3.880046e-01	ci left: 5.484735e-04	ci right 8.181018e-04	k: 101	n:150000
KS ci ratio: 1.601592e-02	ci left: 2.831021e-01	ci right 2.876795e-01	k: 42808	n:150000
PDZD9   150000 perm   32 sec   (4717 perm/sec)   p_kst 2.853867e-01   p_cons 6.733333e-04   p_joint 2.533333e-04

Joint ci ratio: 5.908791e-01	ci left: 1.945023e-04	ci right 3.619876e-04	k: 43	n:160000
Cons ci ratio: 3.702744e-01	ci left: 5.707416e-04	ci right 8.353948e-04	k: 111	n:160000
KS ci ratio: 1.552231e-02	ci left: 2.827827e-01	ci right 2.872126e-01	k: 45599	n:160000
PDZD9   160000 perm   35 sec   (4637 perm/sec)   p_kst 2.849937e-01   p_cons 6.937500e-04   p_joint 2.687500e-04

Joint ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
Cons ci ratio: 3.670174e-01	ci left: 5.478421e-04	ci right 7.991061e-04	k: 113	n:170000
KS ci ratio: 1.506647e-02	ci left: 2.826436e-01	ci right 2.869402e-01	k: 48414	n:170000
PDZD9   170000 perm   37 sec   (4569 perm/sec)   p_kst 2.847882e-01   p_cons 6.647059e-04   p_joint 2.588235e-04

Joint ci ratio: 5.778970e-01	ci left: 1.823574e-04	ci right 3.345055e-04	k: 45	n:180000
Cons ci ratio: 3.519041e-01	ci left: 5.679480e-04	ci right 8.152596e-04	k: 123	n:180000
KS ci ratio: 1.465315e-02	ci left: 2.823942e-01	ci right 2.865683e-01	k: 51206	n:180000
PDZD9   180000 perm   40 sec   (4487 perm/sec)   p_kst 2.844778e-01   p_cons 6.833333e-04   p_joint 2.500000e-04

Joint ci ratio: 5.599263e-01	ci left: 1.862763e-04	ci right 3.349390e-04	k: 48	n:190000
Cons ci ratio: 3.397872e-01	ci left: 5.813120e-04	ci right 8.238161e-04	k: 132	n:190000
KS ci ratio: 1.425106e-02	ci left: 2.827713e-01	ci right 2.868352e-01	k: 54112	n:190000
PDZD9   190000 perm   43 sec   (4412 perm/sec)   p_kst 2.848000e-01   p_cons 6.947368e-04   p_joint 2.526316e-04

Joint ci ratio: 5.435342e-01	ci left: 1.898700e-04	ci right 3.352644e-04	k: 51	n:200000
Cons ci ratio: 3.311837e-01	ci left: 5.842989e-04	ci right 8.205622e-04	k: 139	n:200000
KS ci ratio: 1.389108e-02	ci left: 2.827977e-01	ci right 2.867585e-01	k: 56955	n:200000
PDZD9   200000 perm   46 sec   (4344 perm/sec)   p_kst 2.847750e-01   p_cons 6.950000e-04   p_joint 2.550000e-04

Joint ci ratio: 5.435376e-01	ci left: 1.808283e-04	ci right 3.193001e-04	k: 51	n:210000
Cons ci ratio: 3.254251e-01	ci left: 5.783222e-04	ci right 8.072534e-04	k: 144	n:210000
KS ci ratio: 1.355215e-02	ci left: 2.829701e-01	ci right 2.868358e-01	k: 59829	n:210000
PDZD9   210000 perm   49 sec   (4276 perm/sec)   p_kst 2.849000e-01   p_cons 6.857143e-04   p_joint 2.428571e-04

Joint ci ratio: 5.285054e-01	ci left: 1.843982e-04	ci right 3.202530e-04	k: 54	n:220000
Cons ci ratio: 3.188949e-01	ci left: 5.771024e-04	ci right 8.000307e-04	k: 150	n:220000
KS ci ratio: 1.323482e-02	ci left: 2.831914e-01	ci right 2.869688e-01	k: 62717	n:220000
PDZD9   220000 perm   52 sec   (4215 perm/sec)   p_kst 2.850773e-01   p_cons 6.818182e-04   p_joint 2.454545e-04

Joint ci ratio: 5.018369e-01	ci left: 1.990767e-04	ci right 3.357783e-04	k: 60	n:230000
Cons ci ratio: 3.088305e-01	ci left: 5.920664e-04	ci right 8.121368e-04	k: 160	n:230000
KS ci ratio: 1.294250e-02	ci left: 2.832772e-01	ci right 2.869717e-01	k: 65578	n:230000
PDZD9   230000 perm   55 sec   (4156 perm/sec)   p_kst 2.851217e-01   p_cons 6.956522e-04   p_joint 2.608696e-04

Joint ci ratio: 5.018397e-01	ci left: 1.907816e-04	ci right 3.217880e-04	k: 60	n:240000
Cons ci ratio: 3.050660e-01	ci left: 5.827796e-04	ci right 7.962449e-04	k: 164	n:240000
KS ci ratio: 1.266278e-02	ci left: 2.835480e-01	ci right 2.871655e-01	k: 68485	n:240000
PDZD9   240000 perm   59 sec   (4097 perm/sec)   p_kst 2.853542e-01   p_cons 6.833333e-04   p_joint 2.500000e-04

Joint ci ratio: 4.861520e-01	ci left: 1.971566e-04	ci right 3.268947e-04	k: 64	n:250000
Cons ci ratio: 2.962198e-01	ci left: 5.964528e-04	ci right 8.074017e-04	k: 174	n:250000
KS ci ratio: 1.240191e-02	ci left: 2.837500e-01	ci right 2.872950e-01	k: 71380	n:250000
PDZD9   250000 perm   62 sec   (4036 perm/sec)   p_kst 2.855200e-01   p_cons 6.960000e-04   p_joint 2.560000e-04

Joint ci ratio: 4.788416e-01	ci left: 1.963299e-04	ci right 3.229434e-04	k: 66	n:260000
Cons ci ratio: 2.904675e-01	ci left: 5.984547e-04	ci right 8.052461e-04	k: 181	n:260000
KS ci ratio: 1.216947e-02	ci left: 2.835034e-01	ci right 2.869784e-01	k: 74162	n:260000
PDZD9   260000 perm   65 sec   (3982 perm/sec)   p_kst 2.852385e-01   p_cons 6.961538e-04   p_joint 2.538462e-04

Joint ci ratio: 4.619140e-01	ci left: 2.053818e-04	ci right 3.316806e-04	k: 71	n:270000
Cons ci ratio: 2.828005e-01	ci left: 6.106654e-04	ci right 8.151133e-04	k: 191	n:270000
KS ci ratio: 1.194192e-02	ci left: 2.835381e-01	ci right 2.869480e-01	k: 77015	n:270000
PDZD9   270000 perm   69 sec   (3931 perm/sec)   p_kst 2.852407e-01   p_cons 7.074074e-04   p_joint 2.629630e-04

Joint ci ratio: 4.495930e-01	ci left: 2.106923e-04	ci right 3.357498e-04	k: 75	n:280000
Cons ci ratio: 2.757102e-01	ci left: 6.220703e-04	ci right 8.242099e-04	k: 201	n:280000
KS ci ratio: 1.172380e-02	ci left: 2.836707e-01	ci right 2.870195e-01	k: 79896	n:280000
PDZD9   280000 perm   72 sec   (3878 perm/sec)   p_kst 2.853429e-01   p_cons 7.178571e-04   p_joint 2.678571e-04

Joint ci ratio: 4.328296e-01	ci left: 2.218187e-04	ci right 3.471455e-04	k: 81	n:290000
Cons ci ratio: 2.697653e-01	ci left: 6.295325e-04	ci right 8.289397e-04	k: 210	n:290000
KS ci ratio: 1.152033e-02	ci left: 2.836845e-01	ci right 2.869750e-01	k: 82745	n:290000
PDZD9   290000 perm   76 sec   (3828 perm/sec)   p_kst 2.853276e-01   p_cons 7.241379e-04   p_joint 2.793103e-04

Joint ci ratio: 4.276465e-01	ci left: 2.203693e-04	ci right 3.429586e-04	k: 83	n:300000
Cons ci ratio: 2.647919e-01	ci left: 6.334283e-04	ci right 8.297574e-04	k: 218	n:300000
KS ci ratio: 1.132663e-02	ci left: 2.837145e-01	ci right 2.869496e-01	k: 85599	n:300000
PDZD9   300000 perm   79 sec   (3778 perm/sec)   p_kst 2.853300e-01   p_cons 7.266667e-04   p_joint 2.766667e-04

Joint ci ratio: 4.178134e-01	ci left: 2.247912e-04	ci right 3.461634e-04	k: 87	n:310000
Cons ci ratio: 2.618210e-01	ci left: 6.280594e-04	ci right 8.201826e-04	k: 223	n:310000
KS ci ratio: 1.114636e-02	ci left: 2.835981e-01	ci right 2.867801e-01	k: 88408	n:310000
PDZD9   310000 perm   83 sec   (3725 perm/sec)   p_kst 2.851871e-01   p_cons 7.193548e-04   p_joint 2.806452e-04

Joint ci ratio: 4.154607e-01	ci left: 2.205637e-04	ci right 3.387969e-04	k: 88	n:320000
Cons ci ratio: 2.578236e-01	ci left: 6.288831e-04	ci right 8.178483e-04	k: 230	n:320000
KS ci ratio: 1.096887e-02	ci left: 2.836953e-01	ci right 2.868273e-01	k: 91283	n:320000
PDZD9   320000 perm   87 sec   (3677 perm/sec)   p_kst 2.852594e-01   p_cons 7.187500e-04   p_joint 2.750000e-04

Joint ci ratio: 4.302211e-01	ci left: 1.976321e-04	ci right 3.084260e-04	k: 82	n:330000
Cons ci ratio: 2.545395e-01	ci left: 6.268404e-04	ci right 8.124119e-04	k: 236	n:330000
KS ci ratio: 1.080554e-02	ci left: 2.835631e-01	ci right 2.866468e-01	k: 94084	n:330000
PDZD9   330000 perm   91 sec   (3630 perm/sec)   p_kst 2.851030e-01   p_cons 7.151515e-04   p_joint 2.484848e-04

Joint ci ratio: 4.226504e-01	ci left: 1.996959e-04	ci right 3.091197e-04	k: 85	n:340000
Cons ci ratio: 2.513779e-01	ci left: 6.249322e-04	ci right 8.072810e-04	k: 242	n:340000
KS ci ratio: 1.064116e-02	ci left: 2.837502e-01	ci right 2.867887e-01	k: 96991	n:340000
PDZD9   340000 perm   95 sec   (3586 perm/sec)   p_kst 2.852676e-01   p_cons 7.117647e-04   p_joint 2.500000e-04

Joint ci ratio: 3.939185e-01	ci left: 2.273232e-04	ci right 3.412199e-04	k: 98	n:350000
Cons ci ratio: 2.493352e-01	ci left: 6.177883e-04	ci right 7.963604e-04	k: 246	n:350000
KS ci ratio: 1.048309e-02	ci left: 2.839641e-01	ci right 2.869594e-01	k: 99911	n:350000
PDZD9   350000 perm   99 sec   (3542 perm/sec)   p_kst 2.854600e-01   p_cons 7.028571e-04   p_joint 2.800000e-04

Joint ci ratio: 3.919450e-01	ci left: 2.235119e-04	ci right 3.347926e-04	k: 99	n:360000
Cons ci ratio: 2.453926e-01	ci left: 6.214724e-04	ci right 7.978361e-04	k: 254	n:360000
KS ci ratio: 1.033694e-02	ci left: 2.839667e-01	ci right 2.869201e-01	k: 102759	n:360000
PDZD9   360000 perm   103 sec   (3497 perm/sec)   p_kst 2.854417e-01   p_cons 7.055556e-04   p_joint 2.750000e-04

Joint ci ratio: 4.086369e-01	ci left: 1.980248e-04	ci right 3.019587e-04	k: 91	n:370000
Cons ci ratio: 2.393651e-01	ci left: 6.376782e-04	ci right 8.135366e-04	k: 267	n:370000
KS ci ratio: 1.019801e-02	ci left: 2.839182e-01	ci right 2.868311e-01	k: 105588	n:370000
PDZD9   370000 perm   107 sec   (3454 perm/sec)   p_kst 2.853730e-01   p_cons 7.216216e-04   p_joint 2.459459e-04

Joint ci ratio: 3.959282e-01	ci left: 2.070059e-04	ci right 3.113907e-04	k: 97	n:380000
Cons ci ratio: 2.337608e-01	ci left: 6.530810e-04	ci right 8.283611e-04	k: 280	n:380000
KS ci ratio: 1.006506e-02	ci left: 2.838515e-01	ci right 2.867255e-01	k: 108409	n:380000
PDZD9   380000 perm   111 sec   (3411 perm/sec)   p_kst 2.852868e-01   p_cons 7.368421e-04   p_joint 2.552632e-04

Joint ci ratio: 3.919492e-01	ci left: 2.063183e-04	ci right 3.090401e-04	k: 99	n:390000
Cons ci ratio: 2.305025e-01	ci left: 6.556554e-04	ci right 8.288246e-04	k: 288	n:390000
KS ci ratio: 9.930618e-03	ci left: 2.840572e-01	ci right 2.868947e-01	k: 111335	n:390000
PDZD9   390000 perm   116 sec   (3370 perm/sec)   p_kst 2.854744e-01   p_cons 7.384615e-04   p_joint 2.538462e-04

Joint ci ratio: 3.900048e-01	ci left: 2.034145e-04	ci right 3.040588e-04	k: 100	n:400000
Cons ci ratio: 2.285347e-01	ci left: 6.510452e-04	ci right 8.213217e-04	k: 293	n:400000
KS ci ratio: 9.803823e-03	ci left: 2.841531e-01	ci right 2.869550e-01	k: 114221	n:400000
PDZD9   400000 perm   120 sec   (3329 perm/sec)   p_kst 2.855525e-01   p_cons 7.325000e-04   p_joint 2.500000e-04

Joint ci ratio: 3.825034e-01	ci left: 2.072620e-04	ci right 3.073415e-04	k: 104	n:410000
Cons ci ratio: 2.240076e-01	ci left: 6.627760e-04	ci right 8.322132e-04	k: 305	n:410000
KS ci ratio: 9.682459e-03	ci left: 2.842152e-01	ci right 2.869829e-01	k: 117095	n:410000
PDZD9   410000 perm   125 sec   (3289 perm/sec)   p_kst 2.855976e-01   p_cons 7.439024e-04   p_joint 2.536585e-04

Joint ci ratio: 3.806956e-01	ci left: 2.044796e-04	ci right 3.026323e-04	k: 105	n:420000
Cons ci ratio: 2.229187e-01	ci left: 6.537383e-04	ci right 8.199411e-04	k: 308	n:420000
KS ci ratio: 9.567781e-03	ci left: 2.841772e-01	ci right 2.869115e-01	k: 119928	n:420000
PDZD9   420000 perm   129 sec   (3252 perm/sec)   p_kst 2.855429e-01   p_cons 7.333333e-04   p_joint 2.500000e-04

Joint ci ratio: 3.703565e-01	ci left: 2.123612e-04	ci right 3.108584e-04	k: 111	n:430000
Cons ci ratio: 2.190529e-01	ci left: 6.627010e-04	ci right 8.278672e-04	k: 319	n:430000
KS ci ratio: 9.457407e-03	ci left: 2.841271e-01	ci right 2.868293e-01	k: 122755	n:430000
PDZD9   430000 perm   134 sec   (3214 perm/sec)   p_kst 2.854767e-01   p_cons 7.418605e-04   p_joint 2.581395e-04

Joint ci ratio: 3.687148e-01	ci left: 2.095964e-04	ci right 3.062764e-04	k: 112	n:440000
Cons ci ratio: 2.170280e-01	ci left: 6.605312e-04	ci right 8.234321e-04	k: 325	n:440000
KS ci ratio: 9.351809e-03	ci left: 2.840341e-01	ci right 2.867051e-01	k: 125562	n:440000
PDZD9   440000 perm   138 sec   (3178 perm/sec)   p_kst 2.853682e-01   p_cons 7.386364e-04   p_joint 2.545455e-04

Joint ci ratio: 3.639155e-01	ci left: 2.109918e-04	ci right 3.067479e-04	k: 115	n:450000
Cons ci ratio: 2.137734e-01	ci left: 6.668765e-04	ci right 8.285525e-04	k: 335	n:450000
KS ci ratio: 9.247049e-03	ci left: 2.840608e-01	ci right 2.867019e-01	k: 128421	n:450000
PDZD9   450000 perm   143 sec   (3142 perm/sec)   p_kst 2.853800e-01   p_cons 7.444444e-04   p_joint 2.555556e-04

Joint ci ratio: 3.592989e-01	ci left: 2.123343e-04	ci right 3.071912e-04	k: 118	n:460000
Cons ci ratio: 2.106610e-01	ci left: 6.729632e-04	ci right 8.334329e-04	k: 345	n:460000
KS ci ratio: 9.143784e-03	ci left: 2.841734e-01	ci right 2.867859e-01	k: 131320	n:460000
PDZD9   460000 perm   148 sec   (3107 perm/sec)   p_kst 2.854783e-01   p_cons 7.500000e-04   p_joint 2.565217e-04

Joint ci ratio: 3.577993e-01	ci left: 2.097525e-04	ci right 3.029738e-04	k: 119	n:470000
Cons ci ratio: 2.091558e-01	ci left: 6.687238e-04	ci right 8.268973e-04	k: 350	n:470000
KS ci ratio: 9.048714e-03	ci left: 2.840645e-01	ci right 2.866487e-01	k: 134117	n:470000
PDZD9   470000 perm   153 sec   (3074 perm/sec)   p_kst 2.853553e-01   p_cons 7.446809e-04   p_joint 2.531915e-04

Joint ci ratio: 3.563183e-01	ci left: 2.072791e-04	ci right 2.989314e-04	k: 120	n:480000
Cons ci ratio: 2.076823e-01	ci left: 6.646649e-04	ci right 8.206300e-04	k: 355	n:480000
KS ci ratio: 8.953987e-03	ci left: 2.840769e-01	ci right 2.866340e-01	k: 136970	n:480000
PDZD9   480000 perm   158 sec   (3042 perm/sec)   p_kst 2.853542e-01   p_cons 7.395833e-04   p_joint 2.500000e-04

Joint ci ratio: 3.534098e-01	ci left: 2.067667e-04	ci right 2.972748e-04	k: 122	n:490000
Cons ci ratio: 2.053873e-01	ci left: 6.665826e-04	ci right 8.210521e-04	k: 363	n:490000
KS ci ratio: 8.860932e-03	ci left: 2.841460e-01	ci right 2.866770e-01	k: 139851	n:490000
PDZD9   490000 perm   163 sec   (3009 perm/sec)   p_kst 2.854102e-01   p_cons 7.408163e-04   p_joint 2.489796e-04

Joint ci ratio: 3.534107e-01	ci left: 2.026312e-04	ci right 2.913294e-04	k: 122	n:500000
Cons ci ratio: 2.037155e-01	ci left: 6.646362e-04	ci right 8.172450e-04	k: 369	n:500000
KS ci ratio: 8.772526e-03	ci left: 2.841285e-01	ci right 2.866340e-01	k: 142690	n:500000
PDZD9   500000 perm   168 sec   (2977 perm/sec)   p_kst 2.853800e-01   p_cons 7.380000e-04   p_joint 2.440000e-04

Joint ci ratio: 3.505721e-01	ci left: 2.022329e-04	ci right 2.898840e-04	k: 124	n:510000
Cons ci ratio: 2.023533e-01	ci left: 6.609095e-04	ci right 8.115224e-04	k: 374	n:510000
KS ci ratio: 8.682623e-03	ci left: 2.843038e-01	ci right 2.867849e-01	k: 145627	n:510000
PDZD9   510000 perm   173 sec   (2946 perm/sec)   p_kst 2.855431e-01   p_cons 7.333333e-04   p_joint 2.431373e-04

Joint ci ratio: 3.478009e-01	ci left: 2.018527e-04	ci right 2.884915e-04	k: 126	n:520000
Cons ci ratio: 2.007539e-01	ci left: 6.591558e-04	ci right 8.080363e-04	k: 380	n:520000
KS ci ratio: 8.598911e-03	ci left: 2.843072e-01	ci right 2.867644e-01	k: 148478	n:520000
PDZD9   520000 perm   178 sec   (2918 perm/sec)   p_kst 2.855346e-01   p_cons 7.307692e-04   p_joint 2.423077e-04

Joint ci ratio: 3.450944e-01	ci left: 2.014894e-04	ci right 2.871490e-04	k: 128	n:530000
Cons ci ratio: 1.986788e-01	ci left: 6.610585e-04	ci right 8.086385e-04	k: 388	n:530000
KS ci ratio: 8.516709e-03	ci left: 2.843521e-01	ci right 2.867861e-01	k: 151351	n:530000
PDZD9   530000 perm   184 sec   (2888 perm/sec)   p_kst 2.855679e-01   p_cons 7.320755e-04   p_joint 2.415094e-04

Joint ci ratio: 3.411502e-01	ci left: 2.028350e-04	ci right 2.878638e-04	k: 131	n:540000
Cons ci ratio: 1.961728e-01	ci left: 6.664200e-04	ci right 8.130961e-04	k: 398	n:540000
KS ci ratio: 8.437930e-03	ci left: 2.843418e-01	ci right 2.867531e-01	k: 154195	n:540000
PDZD9   540000 perm   189 sec   (2859 perm/sec)   p_kst 2.855463e-01   p_cons 7.370370e-04   p_joint 2.425926e-04

Joint ci ratio: 3.385949e-01	ci left: 2.024731e-04	ci right 2.865755e-04	k: 133	n:550000
Cons ci ratio: 1.944743e-01	ci left: 6.664082e-04	ci right 8.116615e-04	k: 405	n:550000
KS ci ratio: 8.361856e-03	ci left: 2.843048e-01	ci right 2.866938e-01	k: 157024	n:550000
PDZD9   550000 perm   194 sec   (2830 perm/sec)   p_kst 2.854982e-01   p_cons 7.363636e-04   p_joint 2.418182e-04

Joint ci ratio: 3.336511e-01	ci left: 2.053977e-04	ci right 2.892014e-04	k: 137	n:560000
Cons ci ratio: 1.921222e-01	ci left: 6.715012e-04	ci right 8.158876e-04	k: 415	n:560000
KS ci ratio: 8.287115e-03	ci left: 2.843030e-01	ci right 2.866706e-01	k: 159872	n:560000
PDZD9   560000 perm   200 sec   (2802 perm/sec)   p_kst 2.854857e-01   p_cons 7.410714e-04   p_joint 2.446429e-04

Joint ci ratio: 3.300824e-01	ci left: 2.066189e-04	ci right 2.898278e-04	k: 140	n:570000
Cons ci ratio: 1.903010e-01	ci left: 6.730838e-04	ci right 8.162798e-04	k: 423	n:570000
KS ci ratio: 8.211799e-03	ci left: 2.844276e-01	ci right 2.867746e-01	k: 162792	n:570000
PDZD9   570000 perm   205 sec   (2774 perm/sec)   p_kst 2.856000e-01   p_cons 7.421053e-04   p_joint 2.456140e-04

Joint ci ratio: 3.289185e-01	ci left: 2.046380e-04	ci right 2.866971e-04	k: 141	n:580000
Cons ci ratio: 1.889689e-01	ci left: 6.713325e-04	ci right 8.130415e-04	k: 429	n:580000
KS ci ratio: 8.142799e-03	ci left: 2.843327e-01	ci right 2.866591e-01	k: 165587	n:580000
PDZD9   580000 perm   211 sec   (2747 perm/sec)   p_kst 2.854948e-01   p_cons 7.396552e-04   p_joint 2.431034e-04

Joint ci ratio: 3.200257e-01	ci left: 2.136249e-04	ci right 2.964973e-04	k: 149	n:590000
Cons ci ratio: 1.859648e-01	ci left: 6.825697e-04	ci right 8.241017e-04	k: 443	n:590000
KS ci ratio: 8.073899e-03	ci left: 2.843224e-01	ci right 2.866289e-01	k: 168430	n:590000
PDZD9   590000 perm   217 sec   (2721 perm/sec)   p_kst 2.854746e-01   p_cons 7.508475e-04   p_joint 2.525424e-04

Joint ci ratio: 3.179134e-01	ci left: 2.131310e-04	ci right 2.951550e-04	k: 151	n:600000
Cons ci ratio: 1.849269e-01	ci left: 6.791399e-04	ci right 8.190866e-04	k: 448	n:600000
KS ci ratio: 8.008518e-03	ci left: 2.842209e-01	ci right 2.865079e-01	k: 171218	n:600000
PDZD9   600000 perm   223 sec   (2695 perm/sec)   p_kst 2.853633e-01   p_cons 7.466667e-04   p_joint 2.516667e-04

Joint ci ratio: 3.168732e-01	ci left: 2.111458e-04	ci right 2.920859e-04	k: 152	n:610000
Cons ci ratio: 1.837037e-01	ci left: 6.773886e-04	ci right 8.159485e-04	k: 454	n:610000
KS ci ratio: 7.944157e-03	ci left: 2.841507e-01	ci right 2.864186e-01	k: 174023	n:610000
PDZD9   610000 perm   229 sec   (2669 perm/sec)   p_kst 2.852836e-01   p_cons 7.442623e-04   p_joint 2.491803e-04

Joint ci ratio: 3.138114e-01	ci left: 2.121960e-04	ci right 2.925952e-04	k: 155	n:620000
Cons ci ratio: 1.821097e-01	ci left: 6.787755e-04	ci right 8.162813e-04	k: 462	n:620000
KS ci ratio: 7.880480e-03	ci left: 2.841263e-01	ci right 2.863757e-01	k: 176855	n:620000
PDZD9   620000 perm   234 sec   (2644 perm/sec)   p_kst 2.852500e-01   p_cons 7.451613e-04   p_joint 2.500000e-04

Joint ci ratio: 3.118191e-01	ci left: 2.117532e-04	ci right 2.913739e-04	k: 157	n:630000
Cons ci ratio: 1.805564e-01	ci left: 6.801234e-04	ci right 8.165986e-04	k: 470	n:630000
KS ci ratio: 7.820960e-03	ci left: 2.839648e-01	ci right 2.861959e-01	k: 179600	n:630000
PDZD9   630000 perm   240 sec   (2620 perm/sec)   p_kst 2.850794e-01   p_cons 7.460317e-04   p_joint 2.492063e-04

Joint ci ratio: 3.098642e-01	ci left: 2.113258e-04	ci right 2.901892e-04	k: 159	n:640000
Cons ci ratio: 1.796059e-01	ci left: 6.769567e-04	ci right 8.120037e-04	k: 475	n:640000
KS ci ratio: 7.760059e-03	ci left: 2.839504e-01	ci right 2.861640e-01	k: 182436	n:640000
PDZD9   640000 perm   247 sec   (2596 perm/sec)   p_kst 2.850563e-01   p_cons 7.421875e-04   p_joint 2.484375e-04

Joint ci ratio: 3.079457e-01	ci left: 2.109131e-04	ci right 2.890394e-04	k: 161	n:650000
Cons ci ratio: 1.784848e-01	ci left: 6.753590e-04	ci right 8.091554e-04	k: 481	n:650000
KS ci ratio: 7.699599e-03	ci left: 2.839873e-01	ci right 2.861838e-01	k: 185305	n:650000
PDZD9   650000 perm   253 sec   (2572 perm/sec)   p_kst 2.850846e-01   p_cons 7.400000e-04   p_joint 2.476923e-04

Joint ci ratio: 3.069999e-01	ci left: 2.091157e-04	ci right 2.862918e-04	k: 162	n:660000
Cons ci ratio: 1.770217e-01	ci left: 6.767082e-04	ci right 8.095554e-04	k: 489	n:660000
KS ci ratio: 7.639253e-03	ci left: 2.840912e-01	ci right 2.862713e-01	k: 188219	n:660000
PDZD9   660000 perm   259 sec   (2550 perm/sec)   p_kst 2.851803e-01   p_cons 7.409091e-04   p_joint 2.454545e-04

Joint ci ratio: 3.060629e-01	ci left: 2.073723e-04	ci right 2.836258e-04	k: 163	n:670000
Cons ci ratio: 1.761257e-01	ci left: 6.737409e-04	ci right 8.052648e-04	k: 494	n:670000
KS ci ratio: 7.581164e-03	ci left: 2.841459e-01	ci right 2.863097e-01	k: 191102	n:670000
PDZD9   670000 perm   265 sec   (2526 perm/sec)   p_kst 2.852269e-01   p_cons 7.373134e-04   p_joint 2.432836e-04

Joint ci ratio: 3.042136e-01	ci left: 2.070387e-04	ci right 2.826205e-04	k: 165	n:680000
Cons ci ratio: 1.743728e-01	ci left: 6.778939e-04	ci right 8.087728e-04	k: 504	n:680000
KS ci ratio: 7.524679e-03	ci left: 2.841828e-01	ci right 2.863307e-01	k: 193974	n:680000
PDZD9   680000 perm   272 sec   (2503 perm/sec)   p_kst 2.852559e-01   p_cons 7.411765e-04   p_joint 2.426471e-04

Joint ci ratio: 3.006130e-01	ci left: 2.093955e-04	ci right 2.847601e-04	k: 169	n:690000
Cons ci ratio: 1.718385e-01	ci left: 6.888670e-04	ci right 8.197310e-04	k: 519	n:690000
KS ci ratio: 7.469358e-03	ci left: 2.842231e-01	ci right 2.863555e-01	k: 196849	n:690000
PDZD9   690000 perm   278 sec   (2481 perm/sec)   p_kst 2.852884e-01   p_cons 7.521739e-04   p_joint 2.449275e-04

Joint ci ratio: 2.971373e-01	ci left: 2.116901e-04	ci right 2.868335e-04	k: 173	n:700000
Cons ci ratio: 1.702093e-01	ci left: 6.927004e-04	ci right 8.229171e-04	k: 529	n:700000
KS ci ratio: 7.418929e-03	ci left: 2.840597e-01	ci right 2.861764e-01	k: 199582	n:700000
PDZD9   700000 perm   285 sec   (2460 perm/sec)   p_kst 2.851171e-01   p_cons 7.557143e-04   p_joint 2.471429e-04

Joint ci ratio: 2.971378e-01	ci left: 2.087085e-04	ci right 2.827937e-04	k: 173	n:710000
Cons ci ratio: 1.689390e-01	ci left: 6.937335e-04	ci right 8.230720e-04	k: 537	n:710000
KS ci ratio: 7.367750e-03	ci left: 2.839980e-01	ci right 2.860995e-01	k: 202384	n:710000
PDZD9   710000 perm   291 sec   (2439 perm/sec)   p_kst 2.850479e-01   p_cons 7.563380e-04   p_joint 2.436620e-04

Joint ci ratio: 2.971383e-01	ci left: 2.058097e-04	ci right 2.788661e-04	k: 173	n:720000
Cons ci ratio: 1.680050e-01	ci left: 6.920802e-04	ci right 8.203249e-04	k: 543	n:720000
KS ci ratio: 7.315746e-03	ci left: 2.840421e-01	ci right 2.861291e-01	k: 205261	n:720000
PDZD9   720000 perm   298 sec   (2418 perm/sec)   p_kst 2.850847e-01   p_cons 7.541667e-04   p_joint 2.402778e-04

Joint ci ratio: 2.962884e-01	ci left: 2.042582e-04	ci right 2.765176e-04	k: 174	n:730000
Cons ci ratio: 1.673911e-01	ci left: 6.878490e-04	ci right 8.147970e-04	k: 547	n:730000
KS ci ratio: 7.266219e-03	ci left: 2.840071e-01	ci right 2.860796e-01	k: 208081	n:730000
PDZD9   730000 perm   304 sec   (2398 perm/sec)   p_kst 2.850425e-01   p_cons 7.493151e-04   p_joint 2.383562e-04

Joint ci ratio: 2.954458e-01	ci left: 2.027490e-04	ci right 2.742322e-04	k: 175	n:740000
Cons ci ratio: 1.666329e-01	ci left: 6.850280e-04	ci right 8.108252e-04	k: 552	n:740000
KS ci ratio: 7.216224e-03	ci left: 2.840554e-01	ci right 2.861139e-01	k: 210962	n:740000
PDZD9   740000 perm   311 sec   (2378 perm/sec)   p_kst 2.850838e-01   p_cons 7.459459e-04   p_joint 2.364865e-04

Joint ci ratio: 2.946103e-01	ci left: 2.012804e-04	ci right 2.720076e-04	k: 176	n:750000
Cons ci ratio: 1.655883e-01	ci left: 6.848396e-04	ci right 8.097352e-04	k: 559	n:750000
KS ci ratio: 7.166568e-03	ci left: 2.841410e-01	ci right 2.861860e-01	k: 213872	n:750000
PDZD9   750000 perm   318 sec   (2360 perm/sec)   p_kst 2.851627e-01   p_cons 7.453333e-04   p_joint 2.346667e-04

Joint ci ratio: 2.913364e-01	ci left: 2.035084e-04	ci right 2.740773e-04	k: 180	n:760000
Cons ci ratio: 1.647084e-01	ci left: 6.833970e-04	ci right 8.073016e-04	k: 565	n:760000
KS ci ratio: 7.119600e-03	ci left: 2.841285e-01	ci right 2.861599e-01	k: 216709	n:760000
PDZD9   760000 perm   325 sec   (2340 perm/sec)   p_kst 2.851434e-01   p_cons 7.434211e-04   p_joint 2.368421e-04

Joint ci ratio: 2.889515e-01	ci left: 2.044780e-04	ci right 2.746967e-04	k: 183	n:770000
Cons ci ratio: 1.635565e-01	ci left: 6.844846e-04	ci right 8.076331e-04	k: 573	n:770000
KS ci ratio: 7.073521e-03	ci left: 2.841177e-01	ci right 2.861358e-01	k: 219547	n:770000
PDZD9   770000 perm   332 sec   (2320 perm/sec)   p_kst 2.851260e-01   p_cons 7.441558e-04   p_joint 2.376623e-04

Joint ci ratio: 2.866242e-01	ci left: 2.054251e-04	ci right 2.752979e-04	k: 186	n:780000
Cons ci ratio: 1.627085e-01	ci left: 6.830874e-04	ci right 8.052850e-04	k: 579	n:780000
KS ci ratio: 7.027772e-03	ci left: 2.841392e-01	ci right 2.861444e-01	k: 222410	n:780000
PDZD9   780000 perm   339 sec   (2302 perm/sec)   p_kst 2.851410e-01   p_cons 7.423077e-04   p_joint 2.384615e-04

Joint ci ratio: 2.851038e-01	ci left: 2.051749e-04	ci right 2.745258e-04	k: 188	n:790000
Cons ci ratio: 1.614605e-01	ci left: 6.853711e-04	ci right 8.069455e-04	k: 588	n:790000
KS ci ratio: 6.983247e-03	ci left: 2.841400e-01	ci right 2.861324e-01	k: 225257	n:790000
PDZD9   790000 perm   346 sec   (2285 perm/sec)   p_kst 2.851354e-01   p_cons 7.443038e-04   p_joint 2.379747e-04

Joint ci ratio: 2.836072e-01	ci left: 2.049320e-04	ci right 2.737720e-04	k: 190	n:800000
Cons ci ratio: 1.606445e-01	ci left: 6.840016e-04	ci right 8.046608e-04	k: 594	n:800000
KS ci ratio: 6.938515e-03	ci left: 2.842020e-01	ci right 2.861820e-01	k: 228153	n:800000
PDZD9   800000 perm   353 sec   (2268 perm/sec)   p_kst 2.851913e-01   p_cons 7.425000e-04   p_joint 2.375000e-04

Joint ci ratio: 2.821340e-01	ci left: 2.046959e-04	ci right 2.730360e-04	k: 192	n:810000
Cons ci ratio: 1.593110e-01	ci left: 6.874087e-04	ci right 8.075661e-04	k: 604	n:810000
KS ci ratio: 6.894736e-03	ci left: 2.842563e-01	ci right 2.862242e-01	k: 231044	n:810000
PDZD9   810000 perm   360 sec   (2251 perm/sec)   p_kst 2.852395e-01   p_cons 7.456790e-04   p_joint 2.370370e-04

Joint ci ratio: 2.806835e-01	ci left: 2.044666e-04	ci right 2.723170e-04	k: 194	n:820000
Cons ci ratio: 1.583974e-01	ci left: 6.872229e-04	ci right 8.065934e-04	k: 611	n:820000
KS ci ratio: 6.852738e-03	ci left: 2.842521e-01	ci right 2.862079e-01	k: 233888	n:820000
PDZD9   820000 perm   367 sec   (2234 perm/sec)   p_kst 2.852293e-01   p_cons 7.451220e-04   p_joint 2.365854e-04

Joint ci ratio: 2.778480e-01	ci left: 2.064850e-04	ci right 2.741919e-04	k: 198	n:830000
Cons ci ratio: 1.571187e-01	ci left: 6.905158e-04	ci right 8.093987e-04	k: 621	n:830000
KS ci ratio: 6.810372e-03	ci left: 2.843155e-01	ci right 2.862595e-01	k: 236788	n:830000
PDZD9   830000 perm   374 sec   (2217 perm/sec)   p_kst 2.852867e-01   p_cons 7.481928e-04   p_joint 2.385542e-04

Joint ci ratio: 2.764622e-01	ci left: 2.062423e-04	ci right 2.734737e-04	k: 200	n:840000
Cons ci ratio: 1.563665e-01	ci left: 6.891580e-04	ci right 8.071859e-04	k: 627	n:840000
KS ci ratio: 6.770817e-03	ci left: 2.842548e-01	ci right 2.861871e-01	k: 239585	n:840000
PDZD9   840000 perm   382 sec   (2199 perm/sec)   p_kst 2.852202e-01   p_cons 7.464286e-04   p_joint 2.380952e-04

Joint ci ratio: 2.744218e-01	ci left: 2.071016e-04	ci right 2.740289e-04	k: 203	n:850000
Cons ci ratio: 1.557479e-01	ci left: 6.867028e-04	ci right 8.038015e-04	k: 632	n:850000
KS ci ratio: 6.732759e-03	ci left: 2.841463e-01	ci right 2.860670e-01	k: 242340	n:850000
PDZD9   850000 perm   390 sec   (2182 perm/sec)   p_kst 2.851059e-01   p_cons 7.435294e-04   p_joint 2.388235e-04

Joint ci ratio: 2.737519e-01	ci left: 2.057763e-04	ci right 2.720851e-04	k: 204	n:860000
Cons ci ratio: 1.548938e-01	ci left: 6.865411e-04	ci right 8.029107e-04	k: 639	n:860000
KS ci ratio: 6.692681e-03	ci left: 2.842017e-01	ci right 2.861113e-01	k: 245234	n:860000
PDZD9   860000 perm   397 sec   (2166 perm/sec)   p_kst 2.851558e-01   p_cons 7.430233e-04   p_joint 2.372093e-04

Joint ci ratio: 2.730868e-01	ci left: 2.044817e-04	ci right 2.701857e-04	k: 205	n:870000
Cons ci ratio: 1.541730e-01	ci left: 6.852796e-04	ci right 8.008449e-04	k: 645	n:870000
KS ci ratio: 6.653667e-03	ci left: 2.842342e-01	ci right 2.861328e-01	k: 248109	n:870000
PDZD9   870000 perm   405 sec   (2150 perm/sec)   p_kst 2.851828e-01   p_cons 7.413793e-04   p_joint 2.356322e-04

Joint ci ratio: 2.717708e-01	ci left: 2.042755e-04	ci right 2.695430e-04	k: 207	n:880000
Cons ci ratio: 1.533444e-01	ci left: 6.851409e-04	ci right 8.000047e-04	k: 652	n:880000
KS ci ratio: 6.614995e-03	ci left: 2.842863e-01	ci right 2.861742e-01	k: 251002	n:880000
PDZD9   880000 perm   412 sec   (2134 perm/sec)   p_kst 2.852295e-01   p_cons 7.409091e-04   p_joint 2.352273e-04

Joint ci ratio: 2.698318e-01	ci left: 2.051223e-04	ci right 2.701135e-04	k: 210	n:890000
Cons ci ratio: 1.526449e-01	ci left: 6.839261e-04	ci right 7.980154e-04	k: 658	n:890000
KS ci ratio: 6.578149e-03	ci left: 2.842655e-01	ci right 2.861427e-01	k: 253831	n:890000
PDZD9   890000 perm   420 sec   (2118 perm/sec)   p_kst 2.852034e-01   p_cons 7.393258e-04   p_joint 2.359551e-04

Joint ci ratio: 2.679337e-01	ci left: 2.059518e-04	ci right 2.706697e-04	k: 213	n:900000
Cons ci ratio: 1.511607e-01	ci left: 6.902225e-04	ci right 8.041414e-04	k: 671	n:900000
KS ci ratio: 6.541164e-03	ci left: 2.842917e-01	ci right 2.861585e-01	k: 256702	n:900000
PDZD9   900000 perm   428 sec   (2104 perm/sec)   p_kst 2.852244e-01   p_cons 7.455556e-04   p_joint 2.366667e-04

Joint ci ratio: 2.679340e-01	ci left: 2.036886e-04	ci right 2.676954e-04	k: 213	n:910000
Cons ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
KS ci ratio: 6.505129e-03	ci left: 2.842966e-01	ci right 2.861531e-01	k: 259554	n:910000
PDZD9   910000 perm   436 sec   (2089 perm/sec)   p_kst 2.852242e-01   p_cons 7.450549e-04   p_joint 2.340659e-04

Joint ci ratio: 2.654643e-01	ci left: 2.055317e-04	ci right 2.694234e-04	k: 217	n:920000
Cons ci ratio: 1.493926e-01	ci left: 6.919551e-04	ci right 8.047048e-04	k: 687	n:920000
KS ci ratio: 6.468786e-03	ci left: 2.843579e-01	ci right 2.862043e-01	k: 262458	n:920000
PDZD9   920000 perm   444 sec   (2074 perm/sec)   p_kst 2.852804e-01   p_cons 7.467391e-04   p_joint 2.358696e-04

Joint ci ratio: 2.630616e-01	ci left: 2.073379e-04	ci right 2.711117e-04	k: 221	n:930000
Cons ci ratio: 1.485315e-01	ci left: 6.927963e-04	ci right 8.049746e-04	k: 695	n:930000
KS ci ratio: 6.433402e-03	ci left: 2.843953e-01	ci right 2.862319e-01	k: 265341	n:930000
PDZD9   930000 perm   452 sec   (2059 perm/sec)   p_kst 2.853129e-01   p_cons 7.473118e-04   p_joint 2.376344e-04

Joint ci ratio: 2.618847e-01	ci left: 2.071199e-04	ci right 2.704949e-04	k: 223	n:940000
Cons ci ratio: 1.476851e-01	ci left: 6.936214e-04	ci right 8.052368e-04	k: 703	n:940000
KS ci ratio: 6.399910e-03	ci left: 2.843480e-01	ci right 2.861746e-01	k: 268145	n:940000
PDZD9   940000 perm   460 sec   (2045 perm/sec)   p_kst 2.852606e-01   p_cons 7.478723e-04   p_joint 2.372340e-04

Joint ci ratio: 2.607234e-01	ci left: 2.069070e-04	ci right 2.698904e-04	k: 225	n:950000
Cons ci ratio: 1.468531e-01	ci left: 6.944309e-04	ci right 8.054917e-04	k: 711	n:950000
KS ci ratio: 6.365605e-03	ci left: 2.843868e-01	ci right 2.862039e-01	k: 271030	n:950000
PDZD9   950000 perm   468 sec   (2031 perm/sec)   p_kst 2.852947e-01   p_cons 7.484211e-04   p_joint 2.368421e-04

Joint ci ratio: 2.584460e-01	ci left: 2.086474e-04	ci right 2.715162e-04	k: 229	n:960000
Cons ci ratio: 1.461365e-01	ci left: 6.942216e-04	ci right 8.046599e-04	k: 718	n:960000
KS ci ratio: 6.332703e-03	ci left: 2.843698e-01	ci right 2.861773e-01	k: 273862	n:960000
PDZD9   960000 perm   476 sec   (2017 perm/sec)   p_kst 2.852729e-01   p_cons 7.479167e-04   p_joint 2.385417e-04

Joint ci ratio: 2.573297e-01	ci left: 2.084249e-04	ci right 2.709119e-04	k: 231	n:970000
Cons ci ratio: 1.456312e-01	ci left: 6.920311e-04	ci right 8.017072e-04	k: 723	n:970000
KS ci ratio: 6.300482e-03	ci left: 2.843418e-01	ci right 2.861399e-01	k: 276683	n:970000
PDZD9   970000 perm   484 sec   (2003 perm/sec)   p_kst 2.852402e-01   p_cons 7.453608e-04   p_joint 2.381443e-04

Joint ci ratio: 2.562277e-01	ci left: 2.082076e-04	ci right 2.703194e-04	k: 233	n:980000
Cons ci ratio: 1.449323e-01	ci left: 6.918528e-04	ci right 8.009288e-04	k: 730	n:980000
KS ci ratio: 6.268778e-03	ci left: 2.843123e-01	ci right 2.861012e-01	k: 279502	n:980000
PDZD9   980000 perm   493 sec   (1989 perm/sec)   p_kst 2.852061e-01   p_cons 7.448980e-04   p_joint 2.377551e-04

Joint ci ratio: 2.535330e-01	ci left: 2.108325e-04	ci right 2.729613e-04	k: 238	n:990000
Cons ci ratio: 1.441456e-01	ci left: 6.926530e-04	ci right 8.012115e-04	k: 738	n:990000
KS ci ratio: 6.236915e-03	ci left: 2.843249e-01	ci right 2.861047e-01	k: 282362	n:990000
PDZD9   990000 perm   501 sec   (1976 perm/sec)   p_kst 2.852141e-01   p_cons 7.454545e-04   p_joint 2.404040e-04

Joint ci ratio: 2.519565e-01	ci left: 2.115341e-04	ci right 2.734213e-04	k: 241	n:1000000
Cons ci ratio: 1.428939e-01	ci left: 6.982598e-04	ci right 8.066657e-04	k: 751	n:1000000
KS ci ratio: 6.204330e-03	ci left: 2.844161e-01	ci right 2.861872e-01	k: 285301	n:1000000
PDZD9   1000000 perm   510 sec   (1963 perm/sec)   p_kst 2.853010e-01   p_cons 7.510000e-04   p_joint 2.410000e-04

Joint ci ratio: 2.509218e-01	ci left: 2.112951e-04	ci right 2.728189e-04	k: 243	n:1010000
Cons ci ratio: 1.421398e-01	ci left: 6.989847e-04	ci right 8.068819e-04	k: 759	n:1010000
KS ci ratio: 6.173345e-03	ci left: 2.844333e-01	ci right 2.861956e-01	k: 288167	n:1010000
PDZD9   1010000 perm   518 sec   (1949 perm/sec)   p_kst 2.853139e-01   p_cons 7.514851e-04   p_joint 2.405941e-04

Joint ci ratio: 2.493933e-01	ci left: 2.119804e-04	ci right 2.732693e-04	k: 246	n:1020000
Cons ci ratio: 1.413054e-01	ci left: 7.006426e-04	ci right 8.081074e-04	k: 768	n:1020000
KS ci ratio: 6.143424e-03	ci left: 2.844101e-01	ci right 2.861637e-01	k: 290992	n:1020000
PDZD9   1020000 perm   527 sec   (1936 perm/sec)   p_kst 2.852863e-01   p_cons 7.529412e-04   p_joint 2.411765e-04

Joint ci ratio: 2.478924e-01	ci left: 2.126535e-04	ci right 2.737100e-04	k: 249	n:1030000
Cons ci ratio: 1.406667e-01	ci left: 7.003967e-04	ci right 8.072974e-04	k: 775	n:1030000
KS ci ratio: 6.113964e-03	ci left: 2.843854e-01	ci right 2.861304e-01	k: 293815	n:1030000
PDZD9   1030000 perm   536 sec   (1923 perm/sec)   p_kst 2.852573e-01   p_cons 7.524272e-04   p_joint 2.417476e-04

Joint ci ratio: 2.464182e-01	ci left: 2.133148e-04	ci right 2.741410e-04	k: 252	n:1040000
Cons ci ratio: 1.397689e-01	ci left: 7.029402e-04	ci right 8.094874e-04	k: 785	n:1040000
KS ci ratio: 6.084550e-03	ci left: 2.843862e-01	ci right 2.861227e-01	k: 296664	n:1040000
PDZD9   1040000 perm   545 sec   (1910 perm/sec)   p_kst 2.852538e-01   p_cons 7.548077e-04   p_joint 2.423077e-04

Joint ci ratio: 2.459328e-01	ci left: 2.121768e-04	ci right 2.725412e-04	k: 253	n:1050000
Cons ci ratio: 1.392385e-01	ci left: 7.017604e-04	ci right 8.076916e-04	k: 791	n:1050000
KS ci ratio: 6.055614e-03	ci left: 2.843831e-01	ci right 2.861114e-01	k: 299509	n:1050000
PDZD9   1050000 perm   553 sec   (1898 perm/sec)   p_kst 2.852467e-01   p_cons 7.533333e-04   p_joint 2.409524e-04

Joint ci ratio: 2.444931e-01	ci left: 2.128314e-04	ci right 2.729738e-04	k: 256	n:1060000
Cons ci ratio: 1.385406e-01	ci left: 7.024249e-04	ci right 8.078811e-04	k: 799	n:1060000
KS ci ratio: 6.028523e-03	ci left: 2.842831e-01	ci right 2.860030e-01	k: 302251	n:1060000
PDZD9   1060000 perm   562 sec   (1885 perm/sec)   p_kst 2.851425e-01   p_cons 7.537736e-04   p_joint 2.415094e-04

Joint ci ratio: 2.435474e-01	ci left: 2.125972e-04	ci right 2.724059e-04	k: 258	n:1070000
Cons ci ratio: 1.377677e-01	ci left: 7.039807e-04	ci right 8.090325e-04	k: 808	n:1070000
KS ci ratio: 6.000347e-03	ci left: 2.842830e-01	ci right 2.859948e-01	k: 305098	n:1070000
PDZD9   1070000 perm   571 sec   (1873 perm/sec)   p_kst 2.851383e-01   p_cons 7.551402e-04   p_joint 2.411215e-04

Joint ci ratio: 2.430787e-01	ci left: 2.114982e-04	ci right 2.708659e-04	k: 259	n:1080000
Cons ci ratio: 1.373441e-01	ci left: 7.019327e-04	ci right 8.063304e-04	k: 813	n:1080000
KS ci ratio: 5.972969e-03	ci left: 2.842551e-01	ci right 2.859590e-01	k: 307915	n:1080000
PDZD9   1080000 perm   580 sec   (1861 perm/sec)   p_kst 2.851065e-01   p_cons 7.527778e-04   p_joint 2.398148e-04

Joint ci ratio: 2.421492e-01	ci left: 2.112812e-04	ci right 2.703271e-04	k: 261	n:1090000
Cons ci ratio: 1.370081e-01	ci left: 6.990366e-04	ci right 8.027285e-04	k: 817	n:1090000
KS ci ratio: 5.944799e-03	ci left: 2.843076e-01	ci right 2.860037e-01	k: 310819	n:1090000
PDZD9   1090000 perm   590 sec   (1848 perm/sec)   p_kst 2.851550e-01   p_cons 7.495413e-04   p_joint 2.394495e-04

Joint ci ratio: 2.412303e-01	ci left: 2.110685e-04	ci right 2.697976e-04	k: 263	n:1100000
Cons ci ratio: 1.364256e-01	ci left: 6.988277e-04	ci right 8.020122e-04	k: 824	n:1100000
KS ci ratio: 5.917631e-03	ci left: 2.843173e-01	ci right 2.860057e-01	k: 313677	n:1100000
PDZD9   1100000 perm   599 sec   (1836 perm/sec)   p_kst 2.851609e-01   p_cons 7.490909e-04   p_joint 2.390909e-04

Joint ci ratio: 2.412305e-01	ci left: 2.091670e-04	ci right 2.673671e-04	k: 263	n:1110000
Cons ci ratio: 1.358505e-01	ci left: 6.986235e-04	ci right 8.013078e-04	k: 831	n:1110000
KS ci ratio: 5.890610e-03	ci left: 2.843422e-01	ci right 2.860229e-01	k: 316552	n:1110000
PDZD9   1110000 perm   609 sec   (1824 perm/sec)   p_kst 2.851820e-01   p_cons 7.486486e-04   p_joint 2.369369e-04

Joint ci ratio: 2.398714e-01	ci left: 2.098165e-04	ci right 2.678196e-04	k: 266	n:1120000
Cons ci ratio: 1.352827e-01	ci left: 6.984238e-04	ci right 8.006151e-04	k: 838	n:1120000
KS ci ratio: 5.864303e-03	ci left: 2.843425e-01	ci right 2.860157e-01	k: 319400	n:1120000
PDZD9   1120000 perm   618 sec   (1812 perm/sec)   p_kst 2.851786e-01   p_cons 7.482143e-04   p_joint 2.375000e-04

Joint ci ratio: 2.394236e-01	ci left: 2.087916e-04	ci right 2.663875e-04	k: 267	n:1130000
Cons ci ratio: 1.351220e-01	ci left: 6.939530e-04	ci right 7.953599e-04	k: 840	n:1130000
KS ci ratio: 5.838687e-03	ci left: 2.843190e-01	ci right 2.859848e-01	k: 322221	n:1130000
PDZD9   1130000 perm   627 sec   (1801 perm/sec)   p_kst 2.851513e-01   p_cons 7.433628e-04   p_joint 2.362832e-04

Joint ci ratio: 2.385352e-01	ci left: 2.086094e-04	ci right 2.659100e-04	k: 269	n:1140000
Cons ci ratio: 1.344839e-01	ci left: 6.946466e-04	ci right 7.956371e-04	k: 848	n:1140000
KS ci ratio: 5.812279e-03	ci left: 2.843748e-01	ci right 2.860333e-01	k: 325132	n:1140000
PDZD9   1140000 perm   637 sec   (1790 perm/sec)   p_kst 2.852035e-01   p_cons 7.438596e-04   p_joint 2.359649e-04

Joint ci ratio: 2.380949e-01	ci left: 2.076130e-04	ci right 2.645191e-04	k: 270	n:1150000
Cons ci ratio: 1.339329e-01	ci left: 6.944888e-04	ci right 7.950098e-04	k: 855	n:1150000
KS ci ratio: 5.786546e-03	ci left: 2.844070e-01	ci right 2.860584e-01	k: 328017	n:1150000
PDZD9   1150000 perm   647 sec   (1779 perm/sec)   p_kst 2.852322e-01   p_cons 7.434783e-04   p_joint 2.347826e-04

Joint ci ratio: 2.367878e-01	ci left: 2.082556e-04	ci right 2.649786e-04	k: 273	n:1160000
Cons ci ratio: 1.333886e-01	ci left: 6.943345e-04	ci right 7.943924e-04	k: 862	n:1160000
KS ci ratio: 5.761639e-03	ci left: 2.844043e-01	ci right 2.860485e-01	k: 330862	n:1160000
PDZD9   1160000 perm   656 sec   (1768 perm/sec)   p_kst 2.852259e-01   p_cons 7.431034e-04   p_joint 2.353448e-04

Joint ci ratio: 2.363570e-01	ci left: 2.072797e-04	ci right 2.636191e-04	k: 274	n:1170000
Cons ci ratio: 1.326984e-01	ci left: 6.958363e-04	ci right 7.955509e-04	k: 871	n:1170000
KS ci ratio: 5.736270e-03	ci left: 2.844571e-01	ci right 2.860944e-01	k: 333772	n:1170000
PDZD9   1170000 perm   666 sec   (1757 perm/sec)   p_kst 2.852752e-01   p_cons 7.444444e-04   p_joint 2.341880e-04

Joint ci ratio: 2.359286e-01	ci left: 2.063204e-04	ci right 2.622825e-04	k: 275	n:1180000
Cons ci ratio: 1.325468e-01	ci left: 6.915780e-04	ci right 7.905601e-04	k: 873	n:1180000
KS ci ratio: 5.711435e-03	ci left: 2.844947e-01	ci right 2.861250e-01	k: 336665	n:1180000
PDZD9   1180000 perm   676 sec   (1747 perm/sec)   p_kst 2.853093e-01   p_cons 7.398305e-04   p_joint 2.330508e-04

Joint ci ratio: 2.355025e-01	ci left: 2.053773e-04	ci right 2.609684e-04	k: 276	n:1190000
Cons ci ratio: 1.320942e-01	ci left: 6.906415e-04	ci right 7.891256e-04	k: 879	n:1190000
KS ci ratio: 5.686766e-03	ci left: 2.845425e-01	ci right 2.861661e-01	k: 339571	n:1190000
PDZD9   1190000 perm   685 sec   (1736 perm/sec)   p_kst 2.853538e-01   p_cons 7.386555e-04   p_joint 2.319328e-04

Joint ci ratio: 2.350786e-01	ci left: 2.044501e-04	ci right 2.596760e-04	k: 277	n:1200000
Cons ci ratio: 1.314238e-01	ci left: 6.921390e-04	ci right 7.902966e-04	k: 888	n:1200000
KS ci ratio: 5.663491e-03	ci left: 2.845122e-01	ci right 2.861289e-01	k: 342384	n:1200000
PDZD9   1200000 perm   696 sec   (1725 perm/sec)   p_kst 2.853200e-01   p_cons 7.400000e-04   p_joint 2.308333e-04

Joint ci ratio: 2.334053e-01	ci left: 2.058722e-04	ci right 2.610294e-04	k: 281	n:1210000
Cons ci ratio: 1.306180e-01	ci left: 6.952118e-04	ci right 7.931539e-04	k: 899	n:1210000
KS ci ratio: 5.640797e-03	ci left: 2.844608e-01	ci right 2.860708e-01	k: 345171	n:1210000
PDZD9   1210000 perm   705 sec   (1715 perm/sec)   p_kst 2.852653e-01   p_cons 7.429752e-04   p_joint 2.322314e-04

Joint ci ratio: 2.317672e-01	ci left: 2.072724e-04	ci right 2.623591e-04	k: 285	n:1220000
Cons ci ratio: 1.301849e-01	ci left: 6.942710e-04	ci right 7.917310e-04	k: 905	n:1220000
KS ci ratio: 5.618621e-03	ci left: 2.843924e-01	ci right 2.859955e-01	k: 347936	n:1220000
PDZD9   1220000 perm   716 sec   (1705 perm/sec)   p_kst 2.851934e-01   p_cons 7.418033e-04   p_joint 2.336066e-04

Joint ci ratio: 2.289815e-01	ci left: 2.109499e-04	ci right 2.662450e-04	k: 292	n:1230000
Cons ci ratio: 1.295429e-01	ci left: 6.957059e-04	ci right 7.928488e-04	k: 914	n:1230000
KS ci ratio: 5.596984e-03	ci left: 2.843047e-01	ci right 2.859012e-01	k: 350676	n:1230000
PDZD9   1230000 perm   726 sec   (1694 perm/sec)   p_kst 2.851024e-01   p_cons 7.430894e-04   p_joint 2.373984e-04

Joint ci ratio: 2.285918e-01	ci left: 2.100089e-04	ci right 2.649505e-04	k: 293	n:1240000
Cons ci ratio: 1.287710e-01	ci left: 6.986798e-04	ci right 7.956122e-04	k: 925	n:1240000
KS ci ratio: 5.574999e-03	ci left: 2.842620e-01	ci right 2.858519e-01	k: 353470	n:1240000
PDZD9   1240000 perm   736 sec   (1684 perm/sec)   p_kst 2.850565e-01   p_cons 7.459677e-04   p_joint 2.362903e-04

Joint ci ratio: 2.282042e-01	ci left: 2.090831e-04	ci right 2.636766e-04	k: 294	n:1250000
Cons ci ratio: 1.282871e-01	ci left: 6.985103e-04	ci right 7.950273e-04	k: 932	n:1250000
KS ci ratio: 5.552867e-03	ci left: 2.842495e-01	ci right 2.858331e-01	k: 356301	n:1250000
PDZD9   1250000 perm   747 sec   (1674 perm/sec)   p_kst 2.850408e-01   p_cons 7.456000e-04   p_joint 2.352000e-04

Joint ci ratio: 2.262943e-01	ci left: 2.111661e-04	ci right 2.657776e-04	k: 299	n:1260000
Cons ci ratio: 1.274697e-01	ci left: 7.021858e-04	ci right 7.985457e-04	k: 944	n:1260000
KS ci ratio: 5.531019e-03	ci left: 2.842357e-01	ci right 2.858129e-01	k: 359130	n:1260000
PDZD9   1260000 perm   757 sec   (1665 perm/sec)   p_kst 2.850238e-01   p_cons 7.492063e-04   p_joint 2.373016e-04

Joint ci ratio: 2.262945e-01	ci left: 2.095034e-04	ci right 2.636849e-04	k: 299	n:1270000
Cons ci ratio: 1.272681e-01	ci left: 6.989436e-04	ci right 7.946955e-04	k: 947	n:1270000
KS ci ratio: 5.508862e-03	ci left: 2.842638e-01	ci right 2.858348e-01	k: 362012	n:1270000
PDZD9   1270000 perm   768 sec   (1654 perm/sec)   p_kst 2.850488e-01   p_cons 7.456693e-04   p_joint 2.354331e-04

Joint ci ratio: 2.251714e-01	ci left: 2.100778e-04	ci right 2.641009e-04	k: 302	n:1280000
Cons ci ratio: 1.263383e-01	ci left: 7.040738e-04	ci right 7.997710e-04	k: 961	n:1280000
KS ci ratio: 5.487811e-03	ci left: 2.842290e-01	ci right 2.857938e-01	k: 364814	n:1280000
PDZD9   1280000 perm   778 sec   (1645 perm/sec)   p_kst 2.850109e-01   p_cons 7.507813e-04   p_joint 2.359375e-04

Joint ci ratio: 2.244319e-01	ci left: 2.099124e-04	ci right 2.636912e-04	k: 304	n:1290000
Cons ci ratio: 1.255574e-01	ci left: 7.076252e-04	ci right 8.031664e-04	k: 973	n:1290000
KS ci ratio: 5.466511e-03	ci left: 2.842312e-01	ci right 2.857899e-01	k: 367663	n:1290000
PDZD9   1290000 perm   789 sec   (1636 perm/sec)   p_kst 2.850101e-01   p_cons 7.542636e-04   p_joint 2.356589e-04

Joint ci ratio: 2.236997e-01	ci left: 2.097498e-04	ci right 2.632875e-04	k: 306	n:1300000
Cons ci ratio: 1.251087e-01	ci left: 7.073977e-04	ci right 8.025416e-04	k: 980	n:1300000
KS ci ratio: 5.445025e-03	ci left: 2.842656e-01	ci right 2.858184e-01	k: 370554	n:1300000
PDZD9   1300000 perm   799 sec   (1626 perm/sec)   p_kst 2.850415e-01   p_cons 7.538462e-04   p_joint 2.353846e-04

Joint ci ratio: 2.233364e-01	ci left: 2.088693e-04	ci right 2.620837e-04	k: 307	n:1310000
Cons ci ratio: 1.247912e-01	ci left: 7.056952e-04	ci right 8.003514e-04	k: 985	n:1310000
KS ci ratio: 5.424512e-03	ci left: 2.842454e-01	ci right 2.857922e-01	k: 373374	n:1310000
PDZD9   1310000 perm   810 sec   (1617 perm/sec)   p_kst 2.850183e-01   p_cons 7.519084e-04   p_joint 2.343511e-04

Joint ci ratio: 2.219000e-01	ci left: 2.101483e-04	ci right 2.632972e-04	k: 311	n:1320000
Cons ci ratio: 1.244761e-01	ci left: 7.040187e-04	ci right 7.981941e-04	k: 990	n:1320000
KS ci ratio: 5.404630e-03	ci left: 2.841952e-01	ci right 2.857361e-01	k: 376154	n:1320000
PDZD9   1320000 perm   821 sec   (1608 perm/sec)   p_kst 2.849652e-01   p_cons 7.500000e-04   p_joint 2.356061e-04

Joint ci ratio: 2.215453e-01	ci left: 2.092784e-04	ci right 2.621111e-04	k: 312	n:1330000
Cons ci ratio: 1.242258e-01	ci left: 7.016393e-04	ci right 7.952937e-04	k: 994	n:1330000
KS ci ratio: 5.384032e-03	ci left: 2.842164e-01	ci right 2.857515e-01	k: 379028	n:1330000
PDZD9   1330000 perm   832 sec   (1599 perm/sec)   p_kst 2.849835e-01   p_cons 7.473684e-04   p_joint 2.345865e-04

Joint ci ratio: 2.204911e-01	ci left: 2.098315e-04	ci right 2.625176e-04	k: 315	n:1340000
Cons ci ratio: 1.237912e-01	ci left: 7.014650e-04	ci right 7.947445e-04	k: 1001	n:1340000
KS ci ratio: 5.363903e-03	ci left: 2.842194e-01	ci right 2.857487e-01	k: 381878	n:1340000
PDZD9   1340000 perm   843 sec   (1590 perm/sec)   p_kst 2.849836e-01   p_cons 7.470149e-04   p_joint 2.350746e-04

Joint ci ratio: 2.197967e-01	ci left: 2.096769e-04	ci right 2.621360e-04	k: 317	n:1350000
Cons ci ratio: 1.236065e-01	ci left: 6.984224e-04	ci right 7.911486e-04	k: 1004	n:1350000
KS ci ratio: 5.344552e-03	ci left: 2.841801e-01	ci right 2.857037e-01	k: 384671	n:1350000
PDZD9   1350000 perm   854 sec   (1582 perm/sec)   p_kst 2.849415e-01   p_cons 7.437037e-04   p_joint 2.348148e-04

Joint ci ratio: 2.180887e-01	ci left: 2.116101e-04	ci right 2.640863e-04	k: 322	n:1360000
Cons ci ratio: 1.229353e-01	ci left: 7.011258e-04	ci right 7.936687e-04	k: 1015	n:1360000
KS ci ratio: 5.324823e-03	ci left: 2.841863e-01	ci right 2.857043e-01	k: 387525	n:1360000
PDZD9   1360000 perm   865 sec   (1572 perm/sec)   p_kst 2.849449e-01   p_cons 7.463235e-04   p_joint 2.367647e-04

Joint ci ratio: 2.177519e-01	ci left: 2.107556e-04	ci right 2.629284e-04	k: 323	n:1370000
Cons ci ratio: 1.227544e-01	ci left: 6.981305e-04	ci right 7.901327e-04	k: 1018	n:1370000
KS ci ratio: 5.305396e-03	ci left: 2.841858e-01	ci right 2.856983e-01	k: 390370	n:1370000
PDZD9   1370000 perm   877 sec   (1563 perm/sec)   p_kst 2.849416e-01   p_cons 7.430657e-04   p_joint 2.357664e-04

Joint ci ratio: 2.167507e-01	ci left: 2.112840e-04	ci right 2.633151e-04	k: 326	n:1380000
Cons ci ratio: 1.221564e-01	ci left: 7.000960e-04	ci right 7.918752e-04	k: 1028	n:1380000
KS ci ratio: 5.285917e-03	ci left: 2.842057e-01	ci right 2.857126e-01	k: 393243	n:1380000
PDZD9   1380000 perm   888 sec   (1555 perm/sec)   p_kst 2.849587e-01   p_cons 7.449275e-04   p_joint 2.362319e-04

Joint ci ratio: 2.151122e-01	ci left: 2.131666e-04	ci right 2.652121e-04	k: 331	n:1390000
Cons ci ratio: 1.216256e-01	ci left: 7.013368e-04	ci right 7.928504e-04	k: 1037	n:1390000
KS ci ratio: 5.266846e-03	ci left: 2.842101e-01	ci right 2.857116e-01	k: 396095	n:1390000
PDZD9   1390000 perm   899 sec   (1546 perm/sec)   p_kst 2.849604e-01   p_cons 7.460432e-04   p_joint 2.381295e-04

Joint ci ratio: 2.144672e-01	ci left: 2.129957e-04	ci right 2.648230e-04	k: 333	n:1400000
Cons ci ratio: 1.212176e-01	ci left: 7.011754e-04	ci right 7.923390e-04	k: 1044	n:1400000
KS ci ratio: 5.248063e-03	ci left: 2.842081e-01	ci right 2.857042e-01	k: 398938	n:1400000
PDZD9   1400000 perm   910 sec   (1538 perm/sec)   p_kst 2.849557e-01   p_cons 7.457143e-04   p_joint 2.378571e-04

Joint ci ratio: 2.131943e-01	ci left: 2.141701e-04	ci right 2.659334e-04	k: 337	n:1410000
Cons ci ratio: 1.208136e-01	ci left: 7.010168e-04	ci right 7.918343e-04	k: 1051	n:1410000
KS ci ratio: 5.229725e-03	ci left: 2.841870e-01	ci right 2.856778e-01	k: 401754	n:1410000
PDZD9   1410000 perm   921 sec   (1531 perm/sec)   p_kst 2.849319e-01   p_cons 7.453901e-04   p_joint 2.390071e-04

Joint ci ratio: 2.125663e-01	ci left: 2.139952e-04	ci right 2.655440e-04	k: 339	n:1420000
Cons ci ratio: 1.204137e-01	ci left: 7.008609e-04	ci right 7.913363e-04	k: 1058	n:1420000
KS ci ratio: 5.210975e-03	ci left: 2.842133e-01	ci right 2.856989e-01	k: 404637	n:1420000
PDZD9   1420000 perm   933 sec   (1523 perm/sec)   p_kst 2.849556e-01   p_cons 7.450704e-04   p_joint 2.387324e-04

Joint ci ratio: 2.116346e-01	ci left: 2.144852e-04	ci right 2.658962e-04	k: 342	n:1430000
Cons ci ratio: 1.201306e-01	ci left: 6.993510e-04	ci right 7.894041e-04	k: 1063	n:1430000
KS ci ratio: 5.191801e-03	ci left: 2.842882e-01	ci right 2.857686e-01	k: 407590	n:1430000
PDZD9   1430000 perm   944 sec   (1514 perm/sec)   p_kst 2.850280e-01   p_cons 7.433566e-04   p_joint 2.391608e-04

Joint ci ratio: 2.116348e-01	ci left: 2.129957e-04	ci right 2.640498e-04	k: 342	n:1440000
Cons ci ratio: 1.199617e-01	ci left: 6.965151e-04	ci right 7.860681e-04	k: 1066	n:1440000
KS ci ratio: 5.174151e-03	ci left: 2.842586e-01	ci right 2.857339e-01	k: 410394	n:1440000
PDZD9   1440000 perm   956 sec   (1506 perm/sec)   p_kst 2.849958e-01   p_cons 7.402778e-04   p_joint 2.375000e-04

Joint ci ratio: 2.104114e-01	ci left: 2.141396e-04	ci right 2.651329e-04	k: 346	n:1450000
Cons ci ratio: 1.194589e-01	ci left: 6.977327e-04	ci right 7.870396e-04	k: 1075	n:1450000
KS ci ratio: 5.156461e-03	ci left: 2.842467e-01	ci right 2.857169e-01	k: 413223	n:1450000
PDZD9   1450000 perm   968 sec   (1499 perm/sec)   p_kst 2.849814e-01   p_cons 7.413793e-04   p_joint 2.386207e-04

Joint ci ratio: 2.095076e-01	ci left: 2.146197e-04	ci right 2.654796e-04	k: 349	n:1460000
Cons ci ratio: 1.190173e-01	ci left: 6.982697e-04	ci right 7.872917e-04	k: 1083	n:1460000
KS ci ratio: 5.139288e-03	ci left: 2.842083e-01	ci right 2.856734e-01	k: 416013	n:1460000
PDZD9   1460000 perm   979 sec   (1491 perm/sec)   p_kst 2.849404e-01   p_cons 7.417808e-04   p_joint 2.390411e-04

Joint ci ratio: 2.089116e-01	ci left: 2.144489e-04	ci right 2.651053e-04	k: 351	n:1470000
Cons ci ratio: 1.187984e-01	ci left: 6.961597e-04	ci right 7.847380e-04	k: 1087	n:1470000
KS ci ratio: 5.121696e-03	ci left: 2.842173e-01	ci right 2.856774e-01	k: 418872	n:1470000
PDZD9   1470000 perm   991 sec   (1484 perm/sec)   p_kst 2.849469e-01   p_cons 7.394558e-04   p_joint 2.387755e-04

Joint ci ratio: 2.080270e-01	ci left: 2.149212e-04	ci right 2.654468e-04	k: 354	n:1480000
Cons ci ratio: 1.184181e-01	ci left: 6.960453e-04	ci right 7.843057e-04	k: 1094	n:1480000
KS ci ratio: 5.104342e-03	ci left: 2.842215e-01	ci right 2.856766e-01	k: 421724	n:1480000
PDZD9   1480000 perm   1003 sec   (1476 perm/sec)   p_kst 2.849486e-01   p_cons 7.391892e-04   p_joint 2.391892e-04

Joint ci ratio: 2.077347e-01	ci left: 2.141150e-04	ci right 2.643713e-04	k: 355	n:1490000
Cons ci ratio: 1.179879e-01	ci left: 6.965843e-04	ci right 7.845697e-04	k: 1102	n:1490000
KS ci ratio: 5.086678e-03	ci left: 2.842645e-01	ci right 2.857148e-01	k: 424634	n:1490000
PDZD9   1490000 perm   1015 sec   (1468 perm/sec)   p_kst 2.849893e-01   p_cons 7.395973e-04   p_joint 2.382550e-04

Joint ci ratio: 2.065773e-01	ci left: 2.152159e-04	ci right 2.654136e-04	k: 359	n:1500000
Cons ci ratio: 1.175623e-01	ci left: 6.971166e-04	ci right 7.848296e-04	k: 1110	n:1500000
KS ci ratio: 5.070298e-03	ci left: 2.842184e-01	ci right 2.856638e-01	k: 427411	n:1500000
PDZD9   1500000 perm   1027 sec   (1460 perm/sec)   p_kst 2.849407e-01   p_cons 7.400000e-04   p_joint 2.393333e-04

Joint ci ratio: 2.062911e-01	ci left: 2.144186e-04	ci right 2.643524e-04	k: 360	n:1510000
Cons ci ratio: 1.172987e-01	ci left: 6.957139e-04	ci right 7.830406e-04	k: 1115	n:1510000
KS ci ratio: 5.053197e-03	ci left: 2.842437e-01	ci right 2.856843e-01	k: 430295	n:1510000
PDZD9   1510000 perm   1039 sec   (1453 perm/sec)   p_kst 2.849636e-01   p_cons 7.384106e-04   p_joint 2.384106e-04

Joint ci ratio: 2.060060e-01	ci left: 2.136319e-04	ci right 2.633050e-04	k: 361	n:1520000
Cons ci ratio: 1.168805e-01	ci left: 6.962458e-04	ci right 7.833062e-04	k: 1123	n:1520000
KS ci ratio: 5.036358e-03	ci left: 2.842614e-01	ci right 2.856973e-01	k: 433168	n:1520000
PDZD9   1520000 perm   1051 sec   (1446 perm/sec)   p_kst 2.849789e-01   p_cons 7.388158e-04   p_joint 2.375000e-04

Joint ci ratio: 2.048771e-01	ci left: 2.147155e-04	ci right 2.643327e-04	k: 365	n:1530000
Cons ci ratio: 1.164668e-01	ci left: 6.967714e-04	ci right 7.835678e-04	k: 1131	n:1530000
KS ci ratio: 5.019959e-03	ci left: 2.842567e-01	ci right 2.856879e-01	k: 436007	n:1530000
PDZD9   1530000 perm   1063 sec   (1439 perm/sec)   p_kst 2.849719e-01   p_cons 7.392157e-04   p_joint 2.385621e-04

Joint ci ratio: 2.048773e-01	ci left: 2.133212e-04	ci right 2.626163e-04	k: 365	n:1540000
Cons ci ratio: 1.163129e-01	ci left: 6.941382e-04	ci right 7.804845e-04	k: 1134	n:1540000
KS ci ratio: 5.002954e-03	ci left: 2.843144e-01	ci right 2.857410e-01	k: 438942	n:1540000
PDZD9   1540000 perm   1076 sec   (1432 perm/sec)   p_kst 2.850273e-01   p_cons 7.363636e-04   p_joint 2.370130e-04

Joint ci ratio: 2.048774e-01	ci left: 2.119449e-04	ci right 2.609220e-04	k: 365	n:1550000
Cons ci ratio: 1.160576e-01	ci left: 6.927919e-04	ci right 7.787687e-04	k: 1139	n:1550000
KS ci ratio: 4.987636e-03	ci left: 2.842475e-01	ci right 2.856694e-01	k: 441685	n:1550000
PDZD9   1550000 perm   1088 sec   (1425 perm/sec)   p_kst 2.849581e-01   p_cons 7.348387e-04   p_joint 2.354839e-04

Joint ci ratio: 2.045982e-01	ci left: 2.111945e-04	ci right 2.599233e-04	k: 366	n:1560000
Cons ci ratio: 1.159054e-01	ci left: 6.902182e-04	ci right 7.757555e-04	k: 1142	n:1560000
KS ci ratio: 4.971809e-03	ci left: 2.842347e-01	ci right 2.856520e-01	k: 444511	n:1560000
PDZD9   1560000 perm   1101 sec   (1417 perm/sec)   p_kst 2.849429e-01   p_cons 7.320513e-04   p_joint 2.346154e-04

Joint ci ratio: 2.043201e-01	ci left: 2.104536e-04	ci right 2.589373e-04	k: 367	n:1570000
Cons ci ratio: 1.155019e-01	ci left: 6.907700e-04	ci right 7.760573e-04	k: 1150	n:1570000
KS ci ratio: 4.956480e-03	ci left: 2.841934e-01	ci right 2.856061e-01	k: 447292	n:1570000
PDZD9   1570000 perm   1113 sec   (1411 perm/sec)   p_kst 2.848994e-01   p_cons 7.324841e-04   p_joint 2.337580e-04

Joint ci ratio: 2.037672e-01	ci left: 2.103228e-04	ci right 2.586288e-04	k: 369	n:1580000
Cons ci ratio: 1.152020e-01	ci left: 6.900859e-04	ci right 7.750526e-04	k: 1156	n:1580000
KS ci ratio: 4.940479e-03	ci left: 2.842197e-01	ci right 2.856279e-01	k: 450179	n:1580000
PDZD9   1580000 perm   1126 sec   (1404 perm/sec)   p_kst 2.849234e-01   p_cons 7.316456e-04   p_joint 2.335443e-04

Joint ci ratio: 2.034925e-01	ci left: 2.095968e-04	ci right 2.576632e-04	k: 370	n:1590000
Cons ci ratio: 1.149045e-01	ci left: 6.894107e-04	ci right 7.740602e-04	k: 1162	n:1590000
KS ci ratio: 4.925771e-03	ci left: 2.841514e-01	ci right 2.855551e-01	k: 452916	n:1590000
PDZD9   1590000 perm   1138 sec   (1397 perm/sec)   p_kst 2.848528e-01   p_cons 7.308176e-04   p_joint 2.327044e-04

Joint ci ratio: 2.032188e-01	ci left: 2.088800e-04	ci right 2.567096e-04	k: 371	n:1600000
Cons ci ratio: 1.147568e-01	ci left: 6.869230e-04	ci right 7.711512e-04	k: 1165	n:1600000
KS ci ratio: 4.910223e-03	ci left: 2.841645e-01	ci right 2.855638e-01	k: 455782	n:1600000
PDZD9   1600000 perm   1151 sec   (1390 perm/sec)   p_kst 2.848638e-01   p_cons 7.281250e-04   p_joint 2.318750e-04

Joint ci ratio: 2.026748e-01	ci left: 2.087618e-04	ci right 2.564204e-04	k: 373	n:1610000
Cons ci ratio: 1.145116e-01	ci left: 6.856729e-04	ci right 7.695560e-04	k: 1170	n:1610000
KS ci ratio: 4.894977e-03	ci left: 2.841644e-01	ci right 2.855594e-01	k: 458627	n:1610000
PDZD9   1610000 perm   1164 sec   (1383 perm/sec)   p_kst 2.848615e-01   p_cons 7.267081e-04   p_joint 2.316770e-04

Joint ci ratio: 2.015995e-01	ci left: 2.098173e-04	ci right 2.574315e-04	k: 377	n:1620000
Cons ci ratio: 1.142194e-01	ci left: 6.850381e-04	ci right 7.686153e-04	k: 1176	n:1620000
KS ci ratio: 4.879702e-03	ci left: 2.841785e-01	ci right 2.855692e-01	k: 461495	n:1620000
PDZD9   1620000 perm   1177 sec   (1377 perm/sec)   p_kst 2.848735e-01   p_cons 7.259259e-04   p_joint 2.327160e-04

Joint ci ratio: 2.010683e-01	ci left: 2.096952e-04	ci right 2.571409e-04	k: 379	n:1630000
Cons ci ratio: 1.138332e-01	ci left: 6.856034e-04	ci right 7.689478e-04	k: 1184	n:1630000
KS ci ratio: 4.864057e-03	ci left: 2.842354e-01	ci right 2.856219e-01	k: 464433	n:1630000
PDZD9   1630000 perm   1190 sec   (1370 perm/sec)   p_kst 2.849282e-01   p_cons 7.263804e-04   p_joint 2.325153e-04

Joint ci ratio: 2.002792e-01	ci left: 2.101539e-04	ci right 2.574941e-04	k: 382	n:1640000
Cons ci ratio: 1.133558e-01	ci left: 6.873472e-04	ci right 7.705298e-04	k: 1194	n:1640000
KS ci ratio: 4.849149e-03	ci left: 2.842422e-01	ci right 2.856244e-01	k: 467290	n:1640000
PDZD9   1640000 perm   1203 sec   (1363 perm/sec)   p_kst 2.849329e-01   p_cons 7.280488e-04   p_joint 2.329268e-04

Joint ci ratio: 2.000183e-01	ci left: 2.094560e-04	ci right 2.565699e-04	k: 383	n:1650000
Cons ci ratio: 1.130252e-01	ci left: 6.873038e-04	ci right 7.702224e-04	k: 1201	n:1650000
KS ci ratio: 4.834399e-03	ci left: 2.842471e-01	ci right 2.856252e-01	k: 470144	n:1650000
PDZD9   1650000 perm   1216 sec   (1357 perm/sec)   p_kst 2.849358e-01   p_cons 7.278788e-04   p_joint 2.321212e-04

Joint ci ratio: 1.992415e-01	ci left: 2.099111e-04	ci right 2.569217e-04	k: 386	n:1660000
Cons ci ratio: 1.126044e-01	ci left: 6.884322e-04	ci right 7.711571e-04	k: 1210	n:1660000
KS ci ratio: 4.820082e-03	ci left: 2.842267e-01	ci right 2.856006e-01	k: 472956	n:1660000
PDZD9   1660000 perm   1229 sec   (1350 perm/sec)   p_kst 2.849133e-01   p_cons 7.289157e-04   p_joint 2.325301e-04

Joint ci ratio: 1.989847e-01	ci left: 2.092231e-04	ci right 2.560119e-04	k: 387	n:1670000
Cons ci ratio: 1.123727e-01	ci left: 6.872196e-04	ci right 7.696176e-04	k: 1215	n:1670000
KS ci ratio: 4.805171e-03	ci left: 2.842676e-01	ci right 2.856374e-01	k: 475870	n:1670000
PDZD9   1670000 perm   1243 sec   (1344 perm/sec)   p_kst 2.849521e-01   p_cons 7.275449e-04   p_joint 2.317365e-04

Joint ci ratio: 1.987288e-01	ci left: 2.085433e-04	ci right 2.551129e-04	k: 388	n:1680000
Cons ci ratio: 1.121885e-01	ci left: 6.854430e-04	ci right 7.674844e-04	k: 1219	n:1680000
KS ci ratio: 4.791083e-03	ci left: 2.842497e-01	ci right 2.856154e-01	k: 478686	n:1680000
PDZD9   1680000 perm   1256 sec   (1338 perm/sec)   p_kst 2.849321e-01   p_cons 7.255952e-04   p_joint 2.309524e-04

Joint ci ratio: 1.984740e-01	ci left: 2.078716e-04	ci right 2.542244e-04	k: 389	n:1690000
Cons ci ratio: 1.119594e-01	ci left: 6.842628e-04	ci right 7.659846e-04	k: 1224	n:1690000
KS ci ratio: 4.776910e-03	ci left: 2.842497e-01	ci right 2.856114e-01	k: 481532	n:1690000
PDZD9   1690000 perm   1269 sec   (1331 perm/sec)   p_kst 2.849302e-01   p_cons 7.242604e-04   p_joint 2.301775e-04

Joint ci ratio: 1.977149e-01	ci left: 2.083260e-04	ci right 2.545811e-04	k: 392	n:1700000
Cons ci ratio: 1.116862e-01	ci left: 6.836684e-04	ci right 7.651069e-04	k: 1230	n:1700000
KS ci ratio: 4.762828e-03	ci left: 2.842527e-01	ci right 2.856104e-01	k: 484383	n:1700000
PDZD9   1700000 perm   1283 sec   (1325 perm/sec)   p_kst 2.849312e-01   p_cons 7.235294e-04   p_joint 2.305882e-04

Joint ci ratio: 1.972138e-01	ci left: 2.082195e-04	ci right 2.543197e-04	k: 394	n:1710000
Cons ci ratio: 1.112801e-01	ci left: 6.847867e-04	ci right 7.660424e-04	k: 1239	n:1710000
KS ci ratio: 4.749163e-03	ci left: 2.842306e-01	ci right 2.855842e-01	k: 487191	n:1710000
PDZD9   1710000 perm   1297 sec   (1318 perm/sec)   p_kst 2.849070e-01   p_cons 7.245614e-04   p_joint 2.304094e-04

Joint ci ratio: 1.969647e-01	ci left: 2.075616e-04	ci right 2.534511e-04	k: 395	n:1720000
Cons ci ratio: 1.110119e-01	ci left: 6.841968e-04	ci right 7.651740e-04	k: 1245	n:1720000
KS ci ratio: 4.735506e-03	ci left: 2.842180e-01	ci right 2.855676e-01	k: 490015	n:1720000
PDZD9   1720000 perm   1311 sec   (1312 perm/sec)   p_kst 2.848924e-01   p_cons 7.238372e-04   p_joint 2.296512e-04

Joint ci ratio: 1.967165e-01	ci left: 2.069114e-04	ci right 2.525926e-04	k: 396	n:1730000
Cons ci ratio: 1.106572e-01	ci left: 6.847380e-04	ci right 7.655034e-04	k: 1253	n:1730000
KS ci ratio: 4.721967e-03	ci left: 2.842055e-01	ci right 2.855513e-01	k: 492839	n:1730000
PDZD9   1730000 perm   1325 sec   (1306 perm/sec)   p_kst 2.848780e-01   p_cons 7.242775e-04   p_joint 2.289017e-04

Joint ci ratio: 1.964693e-01	ci left: 2.062686e-04	ci right 2.517439e-04	k: 397	n:1740000
Cons ci ratio: 1.105252e-01	ci left: 6.824791e-04	ci right 7.628758e-04	k: 1256	n:1740000
KS ci ratio: 4.708337e-03	ci left: 2.842110e-01	ci right 2.855529e-01	k: 495694	n:1740000
PDZD9   1740000 perm   1338 sec   (1300 perm/sec)   p_kst 2.848816e-01   p_cons 7.218391e-04   p_joint 2.281609e-04

Joint ci ratio: 1.952466e-01	ci left: 2.078070e-04	ci right 2.533024e-04	k: 402	n:1750000
Cons ci ratio: 1.101752e-01	ci left: 6.830245e-04	ci right 7.632141e-04	k: 1264	n:1750000
KS ci ratio: 4.694134e-03	ci left: 2.842764e-01	ci right 2.856146e-01	k: 498654	n:1750000
PDZD9   1750000 perm   1352 sec   (1294 perm/sec)   p_kst 2.849451e-01   p_cons 7.222857e-04   p_joint 2.297143e-04

Joint ci ratio: 1.945238e-01	ci left: 2.082477e-04	ci right 2.536508e-04	k: 405	n:1760000
Cons ci ratio: 1.097852e-01	ci left: 6.841167e-04	ci right 7.641319e-04	k: 1273	n:1760000
KS ci ratio: 4.680815e-03	ci left: 2.842752e-01	ci right 2.856096e-01	k: 501498	n:1760000
PDZD9   1760000 perm   1366 sec   (1289 perm/sec)   p_kst 2.849420e-01   p_cons 7.232955e-04   p_joint 2.301136e-04

Joint ci ratio: 1.945240e-01	ci left: 2.070711e-04	ci right 2.522177e-04	k: 405	n:1770000
Cons ci ratio: 1.097424e-01	ci left: 6.808010e-04	ci right 7.603953e-04	k: 1274	n:1770000
KS ci ratio: 4.667861e-03	ci left: 2.842521e-01	ci right 2.855825e-01	k: 504303	n:1770000
PDZD9   1770000 perm   1380 sec   (1283 perm/sec)   p_kst 2.849169e-01   p_cons 7.197740e-04   p_joint 2.288136e-04

Joint ci ratio: 1.945241e-01	ci left: 2.059078e-04	ci right 2.508008e-04	k: 405	n:1780000
Cons ci ratio: 1.095279e-01	ci left: 6.797082e-04	ci right 7.590094e-04	k: 1279	n:1780000
KS ci ratio: 4.654770e-03	ci left: 2.842505e-01	ci right 2.855772e-01	k: 507146	n:1780000
PDZD9   1780000 perm   1394 sec   (1277 perm/sec)   p_kst 2.849135e-01   p_cons 7.185393e-04   p_joint 2.275281e-04

Joint ci ratio: 1.938093e-01	ci left: 2.063520e-04	ci right 2.511570e-04	k: 408	n:1790000
Cons ci ratio: 1.091872e-01	ci left: 6.802580e-04	ci right 7.593606e-04	k: 1287	n:1790000
KS ci ratio: 4.641522e-03	ci left: 2.842723e-01	ci right 2.855954e-01	k: 510031	n:1790000
PDZD9   1790000 perm   1408 sec   (1271 perm/sec)   p_kst 2.849335e-01   p_cons 7.189944e-04   p_joint 2.279330e-04

Joint ci ratio: 1.928684e-01	ci left: 2.073203e-04	ci right 2.520914e-04	k: 412	n:1800000
Cons ci ratio: 1.088917e-01	ci left: 6.802616e-04	ci right 7.591368e-04	k: 1294	n:1800000
KS ci ratio: 4.628568e-03	ci left: 2.842779e-01	ci right 2.855973e-01	k: 512887	n:1800000
PDZD9   1800000 perm   1422 sec   (1266 perm/sec)   p_kst 2.849372e-01   p_cons 7.188889e-04   p_joint 2.288889e-04

Joint ci ratio: 1.921717e-01	ci left: 2.077524e-04	ci right 2.524358e-04	k: 415	n:1810000
Cons ci ratio: 1.085986e-01	ci left: 6.802655e-04	ci right 7.589153e-04	k: 1301	n:1810000
KS ci ratio: 4.616036e-03	ci left: 2.842558e-01	ci right 2.855715e-01	k: 515693	n:1810000
PDZD9   1810000 perm   1436 sec   (1260 perm/sec)   p_kst 2.849133e-01   p_cons 7.187845e-04   p_joint 2.292818e-04

Joint ci ratio: 1.910270e-01	ci left: 2.092264e-04	ci right 2.539277e-04	k: 420	n:1820000
Cons ci ratio: 1.083493e-01	ci left: 6.797350e-04	ci right 7.581315e-04	k: 1307	n:1820000
KS ci ratio: 4.603096e-03	ci left: 2.842789e-01	ci right 2.855910e-01	k: 518581	n:1820000
PDZD9   1820000 perm   1450 sec   (1255 perm/sec)   p_kst 2.849346e-01   p_cons 7.181319e-04   p_joint 2.307692e-04

Joint ci ratio: 1.903499e-01	ci left: 2.096442e-04	ci right 2.542576e-04	k: 423	n:1830000
Cons ci ratio: 1.079784e-01	ci left: 6.808056e-04	ci right 7.590397e-04	k: 1316	n:1830000
KS ci ratio: 4.590252e-03	ci left: 2.843029e-01	ci right 2.856114e-01	k: 521471	n:1830000
PDZD9   1830000 perm   1465 sec   (1249 perm/sec)   p_kst 2.849568e-01   p_cons 7.191257e-04   p_joint 2.311475e-04

Joint ci ratio: 1.901259e-01	ci left: 2.090224e-04	ci right 2.534451e-04	k: 424	n:1840000
Cons ci ratio: 1.078149e-01	ci left: 6.792208e-04	ci right 7.571471e-04	k: 1320	n:1840000
KS ci ratio: 4.577411e-03	ci left: 2.843359e-01	ci right 2.856409e-01	k: 524378	n:1840000
PDZD9   1840000 perm   1479 sec   (1244 perm/sec)   p_kst 2.849880e-01   p_cons 7.173913e-04   p_joint 2.304348e-04

Joint ci ratio: 1.896802e-01	ci left: 2.089222e-04	ci right 2.532075e-04	k: 426	n:1850000
Cons ci ratio: 1.075709e-01	ci left: 6.787052e-04	ci right 7.563850e-04	k: 1326	n:1850000
KS ci ratio: 4.564961e-03	ci left: 2.843431e-01	ci right 2.856446e-01	k: 527238	n:1850000
PDZD9   1850000 perm   1494 sec   (1238 perm/sec)   p_kst 2.849935e-01   p_cons 7.167568e-04   p_joint 2.302703e-04

Joint ci ratio: 1.892375e-01	ci left: 2.088233e-04	ci right 2.529724e-04	k: 428	n:1860000
Cons ci ratio: 1.074496e-01	ci left: 6.766258e-04	ci right 7.539747e-04	k: 1329	n:1860000
KS ci ratio: 4.552535e-03	ci left: 2.843572e-01	ci right 2.856553e-01	k: 530111	n:1860000
PDZD9   1860000 perm   1508 sec   (1233 perm/sec)   p_kst 2.850059e-01   p_cons 7.145161e-04   p_joint 2.301075e-04

Joint ci ratio: 1.885793e-01	ci left: 2.092350e-04	ci right 2.532997e-04	k: 431	n:1870000
Cons ci ratio: 1.071279e-01	ci left: 6.771708e-04	ci right 7.543356e-04	k: 1337	n:1870000
KS ci ratio: 4.539834e-03	ci left: 2.844049e-01	ci right 2.856995e-01	k: 533047	n:1870000
PDZD9   1870000 perm   1523 sec   (1228 perm/sec)   p_kst 2.850519e-01   p_cons 7.149733e-04   p_joint 2.304813e-04

Joint ci ratio: 1.874972e-01	ci left: 2.106564e-04	ci right 2.547369e-04	k: 436	n:1880000
Cons ci ratio: 1.068487e-01	ci left: 6.771926e-04	ci right 7.541462e-04	k: 1344	n:1880000
KS ci ratio: 4.527771e-03	ci left: 2.844042e-01	ci right 2.856954e-01	k: 535893	n:1880000
PDZD9   1880000 perm   1537 sec   (1223 perm/sec)   p_kst 2.850495e-01   p_cons 7.148936e-04   p_joint 2.319149e-04

Joint ci ratio: 1.868569e-01	ci left: 2.110548e-04	ci right 2.550507e-04	k: 439	n:1890000
Cons ci ratio: 1.065324e-01	ci left: 6.777294e-04	ci right 7.545017e-04	k: 1352	n:1890000
KS ci ratio: 4.515656e-03	ci left: 2.844168e-01	ci right 2.857045e-01	k: 538764	n:1890000
PDZD9   1890000 perm   1552 sec   (1218 perm/sec)   p_kst 2.850603e-01   p_cons 7.153439e-04   p_joint 2.322751e-04

Joint ci ratio: 1.864336e-01	ci left: 2.109474e-04	ci right 2.548101e-04	k: 441	n:1900000
Cons ci ratio: 1.063753e-01	ci left: 6.762116e-04	ci right 7.526919e-04	k: 1356	n:1900000
KS ci ratio: 4.504162e-03	ci left: 2.843819e-01	ci right 2.856662e-01	k: 541545	n:1900000
PDZD9   1900000 perm   1567 sec   (1213 perm/sec)   p_kst 2.850237e-01   p_cons 7.136842e-04   p_joint 2.321053e-04

Joint ci ratio: 1.858041e-01	ci left: 2.113405e-04	ci right 2.551198e-04	k: 444	n:1910000
Cons ci ratio: 1.061799e-01	ci left: 6.752194e-04	ci right 7.514385e-04	k: 1361	n:1910000
KS ci ratio: 4.492409e-03	ci left: 2.843787e-01	ci right 2.856596e-01	k: 544386	n:1910000
PDZD9   1910000 perm   1581 sec   (1208 perm/sec)   p_kst 2.850188e-01   p_cons 7.125654e-04   p_joint 2.324607e-04

Joint ci ratio: 1.849746e-01	ci left: 2.122264e-04	ci right 2.559709e-04	k: 448	n:1920000
Cons ci ratio: 1.058695e-01	ci left: 6.757588e-04	ci right 7.518019e-04	k: 1369	n:1920000
KS ci ratio: 4.480347e-03	ci left: 2.844120e-01	ci right 2.856897e-01	k: 547297	n:1920000
PDZD9   1920000 perm   1596 sec   (1203 perm/sec)   p_kst 2.850505e-01   p_cons 7.130208e-04   p_joint 2.333333e-04

Joint ci ratio: 1.847690e-01	ci left: 2.116209e-04	ci right 2.551868e-04	k: 449	n:1930000
Cons ci ratio: 1.056768e-01	ci left: 6.747796e-04	ci right 7.505657e-04	k: 1374	n:1930000
KS ci ratio: 4.469034e-03	ci left: 2.843855e-01	ci right 2.856597e-01	k: 550093	n:1930000
PDZD9   1930000 perm   1611 sec   (1198 perm/sec)   p_kst 2.850223e-01   p_cons 7.119171e-04   p_joint 2.326425e-04

Joint ci ratio: 1.847691e-01	ci left: 2.105301e-04	ci right 2.538714e-04	k: 449	n:1940000
Cons ci ratio: 1.054471e-01	ci left: 6.743125e-04	ci right 7.498713e-04	k: 1380	n:1940000
KS ci ratio: 4.457548e-03	ci left: 2.843829e-01	ci right 2.856538e-01	k: 552935	n:1940000
PDZD9   1940000 perm   1626 sec   (1193 perm/sec)   p_kst 2.850180e-01   p_cons 7.113402e-04   p_joint 2.314433e-04

Joint ci ratio: 1.845642e-01	ci left: 2.099396e-04	ci right 2.531060e-04	k: 450	n:1950000
Cons ci ratio: 1.051429e-01	ci left: 6.748490e-04	ci right 7.502363e-04	k: 1388	n:1950000
KS ci ratio: 4.446138e-03	ci left: 2.843813e-01	ci right 2.856490e-01	k: 555779	n:1950000
PDZD9   1950000 perm   1641 sec   (1188 perm/sec)   p_kst 2.850149e-01   p_cons 7.117949e-04   p_joint 2.307692e-04

Joint ci ratio: 1.843600e-01	ci left: 2.093551e-04	ci right 2.523484e-04	k: 451	n:1960000
Cons ci ratio: 1.049166e-01	ci left: 6.743867e-04	ci right 7.495502e-04	k: 1394	n:1960000
KS ci ratio: 4.434555e-03	ci left: 2.844038e-01	ci right 2.856683e-01	k: 558670	n:1960000
PDZD9   1960000 perm   1656 sec   (1183 perm/sec)   p_kst 2.850357e-01   p_cons 7.112245e-04   p_joint 2.301020e-04

Joint ci ratio: 1.835495e-01	ci left: 2.102293e-04	ci right 2.531913e-04	k: 455	n:1970000
Cons ci ratio: 1.046544e-01	ci left: 6.744236e-04	ci right 7.493918e-04	k: 1401	n:1970000
KS ci ratio: 4.423353e-03	ci left: 2.843991e-01	ci right 2.856604e-01	k: 561508	n:1970000
PDZD9   1970000 perm   1671 sec   (1179 perm/sec)   p_kst 2.850294e-01   p_cons 7.111675e-04   p_joint 2.309645e-04

Joint ci ratio: 1.827497e-01	ci left: 2.110952e-04	ci right 2.540252e-04	k: 459	n:1980000
Cons ci ratio: 1.043941e-01	ci left: 6.744603e-04	ci right 7.492347e-04	k: 1408	n:1980000
KS ci ratio: 4.412242e-03	ci left: 2.843940e-01	ci right 2.856521e-01	k: 564345	n:1980000
PDZD9   1980000 perm   1687 sec   (1174 perm/sec)   p_kst 2.850227e-01   p_cons 7.111111e-04   p_joint 2.318182e-04

Joint ci ratio: 1.823537e-01	ci left: 2.109935e-04	ci right 2.537996e-04	k: 461	n:1990000
Cons ci ratio: 1.040990e-01	ci left: 6.749864e-04	ci right 7.495946e-04	k: 1416	n:1990000
KS ci ratio: 4.400996e-03	ci left: 2.844090e-01	ci right 2.856640e-01	k: 567222	n:1990000
PDZD9   1990000 perm   1702 sec   (1169 perm/sec)   p_kst 2.850362e-01   p_cons 7.115578e-04   p_joint 2.316583e-04

Joint ci ratio: 1.819603e-01	ci left: 2.108929e-04	ci right 2.535762e-04	k: 463	n:2000000
Cons ci ratio: 1.038428e-01	ci left: 6.750204e-04	ci right 7.494376e-04	k: 1423	n:2000000
KS ci ratio: 4.390009e-03	ci left: 2.844079e-01	ci right 2.856597e-01	k: 570067	n:2000000
PDZD9   2000000 perm   1718 sec   (1164 perm/sec)   p_kst 2.850335e-01   p_cons 7.115000e-04   p_joint 2.315000e-04

Joint ci ratio: 1.817646e-01	ci left: 2.103186e-04	ci right 2.528347e-04	k: 464	n:2010000
Cons ci ratio: 1.035523e-01	ci left: 6.755390e-04	ci right 7.497923e-04	k: 1431	n:2010000
KS ci ratio: 4.379339e-03	ci left: 2.843850e-01	ci right 2.856336e-01	k: 572868	n:2010000
PDZD9   2010000 perm   1733 sec   (1160 perm/sec)   p_kst 2.850090e-01   p_cons 7.119403e-04   p_joint 2.308458e-04

Joint ci ratio: 1.811810e-01	ci left: 2.106951e-04	ci right 2.531356e-04	k: 467	n:2020000
Cons ci ratio: 1.033361e-01	ci left: 6.750882e-04	ci right 7.491276e-04	k: 1437	n:2020000
KS ci ratio: 4.368401e-03	ci left: 2.843944e-01	ci right 2.856399e-01	k: 575734	n:2020000
PDZD9   2020000 perm   1749 sec   (1155 perm/sec)   p_kst 2.850168e-01   p_cons 7.113861e-04   p_joint 2.311881e-04

Joint ci ratio: 1.809878e-01	ci left: 2.101274e-04	ci right 2.524036e-04	k: 468	n:2030000
Cons ci ratio: 1.031569e-01	ci left: 6.741621e-04	ci right 7.479640e-04	k: 1442	n:2030000
KS ci ratio: 4.357508e-03	ci left: 2.844071e-01	ci right 2.856496e-01	k: 578607	n:2030000
PDZD9   2030000 perm   1765 sec   (1150 perm/sec)   p_kst 2.850281e-01   p_cons 7.103448e-04   p_joint 2.305419e-04

Joint ci ratio: 1.804117e-01	ci left: 2.105015e-04	ci right 2.527033e-04	k: 471	n:2040000
Cons ci ratio: 1.028367e-01	ci left: 6.751555e-04	ci right 7.488228e-04	k: 1451	n:2040000
KS ci ratio: 4.346785e-03	ci left: 2.844115e-01	ci right 2.856509e-01	k: 581463	n:2040000
PDZD9   2040000 perm   1781 sec   (1146 perm/sec)   p_kst 2.850309e-01   p_cons 7.112745e-04   p_joint 2.308824e-04

Joint ci ratio: 1.794635e-01	ci left: 2.118038e-04	ci right 2.540194e-04	k: 476	n:2050000
Cons ci ratio: 1.023443e-01	ci left: 6.785162e-04	ci right 7.521744e-04	k: 1465	n:2050000
KS ci ratio: 4.336592e-03	ci left: 2.843733e-01	ci right 2.856097e-01	k: 584232	n:2050000
PDZD9   2050000 perm   1796 sec   (1141 perm/sec)   p_kst 2.849912e-01   p_cons 7.146341e-04   p_joint 2.321951e-04

Joint ci ratio: 1.787157e-01	ci left: 2.126304e-04	ci right 2.548150e-04	k: 480	n:2060000
Cons ci ratio: 1.020662e-01	ci left: 6.790066e-04	ci right 7.525058e-04	k: 1473	n:2060000
KS ci ratio: 4.325579e-03	ci left: 2.844195e-01	ci right 2.856529e-01	k: 587174	n:2060000
PDZD9   2060000 perm   1812 sec   (1137 perm/sec)   p_kst 2.850359e-01   p_cons 7.150485e-04   p_joint 2.330097e-04

Joint ci ratio: 1.777939e-01	ci left: 2.139109e-04	ci right 2.561071e-04	k: 485	n:2070000
Cons ci ratio: 1.016873e-01	ci left: 6.809051e-04	ci right 7.543198e-04	k: 1484	n:2070000
KS ci ratio: 4.314828e-03	ci left: 2.844484e-01	ci right 2.856788e-01	k: 590081	n:2070000
PDZD9   2070000 perm   1828 sec   (1132 perm/sec)   p_kst 2.850633e-01   p_cons 7.169082e-04   p_joint 2.342995e-04

Joint ci ratio: 1.777940e-01	ci left: 2.128824e-04	ci right 2.548758e-04	k: 485	n:2080000
Cons ci ratio: 1.015849e-01	ci left: 6.790371e-04	ci right 7.521723e-04	k: 1487	n:2080000
KS ci ratio: 4.304579e-03	ci left: 2.844370e-01	ci right 2.856645e-01	k: 592905	n:2080000
PDZD9   2080000 perm   1844 sec   (1128 perm/sec)   p_kst 2.850505e-01   p_cons 7.149038e-04   p_joint 2.331731e-04

Joint ci ratio: 1.774293e-01	ci left: 2.127783e-04	ci right 2.546557e-04	k: 487	n:2090000
Cons ci ratio: 1.013129e-01	ci left: 6.795187e-04	ci right 7.524982e-04	k: 1495	n:2090000
KS ci ratio: 4.294180e-03	ci left: 2.844469e-01	ci right 2.856714e-01	k: 595773	n:2090000
PDZD9   2090000 perm   1860 sec   (1123 perm/sec)   p_kst 2.850589e-01   p_cons 7.153110e-04   p_joint 2.330144e-04

Joint ci ratio: 1.768864e-01	ci left: 2.131303e-04	ci right 2.549349e-04	k: 490	n:2100000
Cons ci ratio: 1.011441e-01	ci left: 6.786036e-04	ci right 7.513561e-04	k: 1500	n:2100000
KS ci ratio: 4.283787e-03	ci left: 2.844633e-01	ci right 2.856849e-01	k: 598655	n:2100000
PDZD9   2100000 perm   1877 sec   (1119 perm/sec)   p_kst 2.850738e-01   p_cons 7.142857e-04   p_joint 2.333333e-04

Joint ci ratio: 1.767066e-01	ci left: 2.125731e-04	ci right 2.542216e-04	k: 491	n:2110000
Cons ci ratio: 1.010096e-01	ci left: 6.772353e-04	ci right 7.497388e-04	k: 1504	n:2110000
KS ci ratio: 4.273682e-03	ci left: 2.844592e-01	ci right 2.856779e-01	k: 601494	n:2110000
PDZD9   2110000 perm   1893 sec   (1115 perm/sec)   p_kst 2.850682e-01   p_cons 7.127962e-04   p_joint 2.327014e-04

Joint ci ratio: 1.758154e-01	ci left: 2.138249e-04	ci right 2.554849e-04	k: 496	n:2120000
Cons ci ratio: 1.005760e-01	ci left: 6.800183e-04	ci right 7.524889e-04	k: 1517	n:2120000
KS ci ratio: 4.263702e-03	ci left: 2.844499e-01	ci right 2.856658e-01	k: 604322	n:2120000
PDZD9   2120000 perm   1909 sec   (1110 perm/sec)   p_kst 2.850575e-01   p_cons 7.155660e-04   p_joint 2.339623e-04

Joint ci ratio: 1.754627e-01	ci left: 2.137187e-04	ci right 2.552656e-04	k: 498	n:2130000
Cons ci ratio: 1.003120e-01	ci left: 6.804873e-04	ci right 7.528062e-04	k: 1525	n:2130000
KS ci ratio: 4.253455e-03	ci left: 2.844731e-01	ci right 2.856861e-01	k: 607219	n:2130000
PDZD9   2130000 perm   1926 sec   (1106 perm/sec)   p_kst 2.850793e-01   p_cons 7.159624e-04   p_joint 2.338028e-04

Joint ci ratio: 1.749376e-01	ci left: 2.140604e-04	ci right 2.555361e-04	k: 501	n:2140000
Cons ci ratio: 1.000828e-01	ci left: 6.804965e-04	ci right 7.526414e-04	k: 1532	n:2140000
KS ci ratio: 4.243484e-03	ci left: 2.844765e-01	ci right 2.856867e-01	k: 610074	n:2140000
PDZD9   2140000 perm   1942 sec   (1102 perm/sec)   p_kst 2.850813e-01   p_cons 7.158879e-04   p_joint 2.341121e-04

Joint ci ratio: 1.747637e-01	ci left: 2.135095e-04	ci right 2.548330e-04	k: 502	n:2150000
Cons ci ratio: 9.992000e-02	ci left: 6.795988e-04	ci right 7.515245e-04	k: 1537	n:2150000
KS ci ratio: 4.233386e-03	ci left: 2.844989e-01	ci right 2.857063e-01	k: 612970	n:2150000
PDZD9   2150000 perm   1959 sec   (1098 perm/sec)   p_kst 2.851023e-01   p_cons 7.148837e-04   p_joint 2.334884e-04

Joint ci ratio: 1.742448e-01	ci left: 2.138493e-04	ci right 2.551027e-04	k: 505	n:2160000
Cons ci ratio: 9.962888e-02	ci left: 6.805152e-04	ci right 7.523158e-04	k: 1546	n:2160000
KS ci ratio: 4.223460e-03	ci left: 2.845114e-01	ci right 2.857160e-01	k: 615845	n:2160000
PDZD9   2160000 perm   1975 sec   (1094 perm/sec)   p_kst 2.851134e-01   p_cons 7.157407e-04   p_joint 2.337963e-04

Joint ci ratio: 1.739015e-01	ci left: 2.137453e-04	ci right 2.548889e-04	k: 507	n:2170000
Cons ci ratio: 9.934029e-02	ci left: 6.814235e-04	ci right 7.530995e-04	k: 1555	n:2170000
KS ci ratio: 4.213775e-03	ci left: 2.845072e-01	ci right 2.857090e-01	k: 618684	n:2170000
PDZD9   2170000 perm   1992 sec   (1089 perm/sec)   p_kst 2.851078e-01   p_cons 7.165899e-04   p_joint 2.336406e-04

Joint ci ratio: 1.733902e-01	ci left: 2.140812e-04	ci right 2.551556e-04	k: 510	n:2180000
Cons ci ratio: 9.921292e-02	ci left: 6.800870e-04	ci right 7.515254e-04	k: 1559	n:2180000
KS ci ratio: 4.204483e-03	ci left: 2.844714e-01	ci right 2.856704e-01	k: 621454	n:2180000
PDZD9   2180000 perm   2008 sec   (1085 perm/sec)   p_kst 2.850706e-01   p_cons 7.151376e-04   p_joint 2.339450e-04

Joint ci ratio: 1.728835e-01	ci left: 2.144141e-04	ci right 2.554196e-04	k: 513	n:2190000
Cons ci ratio: 9.895948e-02	ci left: 6.805440e-04	ci right 7.518372e-04	k: 1567	n:2190000
KS ci ratio: 4.194895e-03	ci left: 2.844706e-01	ci right 2.856669e-01	k: 624300	n:2190000
PDZD9   2190000 perm   2025 sec   (1081 perm/sec)   p_kst 2.850685e-01   p_cons 7.155251e-04   p_joint 2.342466e-04

Joint ci ratio: 1.725481e-01	ci left: 2.143093e-04	ci right 2.552070e-04	k: 515	n:2200000
Cons ci ratio: 9.864536e-02	ci left: 6.818838e-04	ci right 7.530775e-04	k: 1577	n:2200000
KS ci ratio: 4.185946e-03	ci left: 2.844140e-01	ci right 2.856075e-01	k: 627023	n:2200000
PDZD9   2200000 perm   2042 sec   (1077 perm/sec)   p_kst 2.850105e-01   p_cons 7.168182e-04   p_joint 2.340909e-04

Joint ci ratio: 1.717180e-01	ci left: 2.155046e-04	ci right 2.564120e-04	k: 520	n:2210000
Cons ci ratio: 9.842729e-02	ci left: 6.818877e-04	ci right 7.529153e-04	k: 1584	n:2210000
KS ci ratio: 4.176656e-03	ci left: 2.843968e-01	ci right 2.855875e-01	k: 629832	n:2210000
PDZD9   2210000 perm   2059 sec   (1073 perm/sec)   p_kst 2.849919e-01   p_cons 7.167421e-04   p_joint 2.352941e-04

Joint ci ratio: 1.708998e-01	ci left: 2.166895e-04	ci right 2.576057e-04	k: 525	n:2220000
Cons ci ratio: 9.814899e-02	ci left: 6.827705e-04	ci right 7.536775e-04	k: 1593	n:2220000
KS ci ratio: 4.166911e-03	ci left: 2.844301e-01	ci right 2.856182e-01	k: 632753	n:2220000
PDZD9   2220000 perm   2076 sec   (1070 perm/sec)   p_kst 2.850239e-01   p_cons 7.175676e-04   p_joint 2.364865e-04

Joint ci ratio: 1.708999e-01	ci left: 2.157178e-04	ci right 2.564505e-04	k: 525	n:2230000
Cons ci ratio: 9.811835e-02	ci left: 6.801462e-04	ci right 7.507572e-04	k: 1594	n:2230000
KS ci ratio: 4.157422e-03	ci left: 2.844448e-01	ci right 2.856302e-01	k: 635633	n:2230000
PDZD9   2230000 perm   2093 sec   (1066 perm/sec)   p_kst 2.850372e-01   p_cons 7.147982e-04   p_joint 2.354260e-04

Joint ci ratio: 1.707378e-01	ci left: 2.151821e-04	ci right 2.557712e-04	k: 526	n:2240000
Cons ci ratio: 9.790376e-02	ci left: 6.801582e-04	ci right 7.506072e-04	k: 1601	n:2240000
KS ci ratio: 4.148347e-03	ci left: 2.844250e-01	ci right 2.856077e-01	k: 638436	n:2240000
PDZD9   2240000 perm   2110 sec   (1062 perm/sec)   p_kst 2.850161e-01   p_cons 7.147321e-04   p_joint 2.348214e-04

Joint ci ratio: 1.705760e-01	ci left: 2.146512e-04	ci right 2.550978e-04	k: 527	n:2250000
Cons ci ratio: 9.772096e-02	ci left: 6.797367e-04	ci right 7.500031e-04	k: 1607	n:2250000
KS ci ratio: 4.139060e-03	ci left: 2.844320e-01	ci right 2.856121e-01	k: 641299	n:2250000
PDZD9   2250000 perm   2127 sec   (1058 perm/sec)   p_kst 2.850218e-01   p_cons 7.142222e-04   p_joint 2.342222e-04

Joint ci ratio: 1.702539e-01	ci left: 2.145487e-04	ci right 2.548917e-04	k: 529	n:2260000
Cons ci ratio: 9.753917e-02	ci left: 6.793191e-04	ci right 7.494042e-04	k: 1613	n:2260000
KS ci ratio: 4.129920e-03	ci left: 2.844305e-01	ci right 2.856081e-01	k: 644143	n:2260000
PDZD9   2260000 perm   2145 sec   (1054 perm/sec)   p_kst 2.850190e-01   p_cons 7.137168e-04   p_joint 2.340708e-04

Joint ci ratio: 1.697741e-01	ci left: 2.148689e-04	ci right 2.551466e-04	k: 532	n:2270000
Cons ci ratio: 9.729832e-02	ci left: 6.797648e-04	ci right 7.497129e-04	k: 1621	n:2270000
KS ci ratio: 4.120699e-03	ci left: 2.844432e-01	ci right 2.856181e-01	k: 647019	n:2270000
PDZD9   2270000 perm   2162 sec   (1050 perm/sec)   p_kst 2.850304e-01   p_cons 7.140969e-04   p_joint 2.343612e-04

Joint ci ratio: 1.692983e-01	ci left: 2.151864e-04	ci right 2.553991e-04	k: 535	n:2280000
Cons ci ratio: 9.717863e-02	ci left: 6.784951e-04	ci right 7.482217e-04	k: 1625	n:2280000
KS ci ratio: 4.111317e-03	ci left: 2.844777e-01	ci right 2.856501e-01	k: 649945	n:2280000
PDZD9   2280000 perm   2179 sec   (1046 perm/sec)   p_kst 2.850636e-01   p_cons 7.127193e-04   p_joint 2.346491e-04

Joint ci ratio: 1.685140e-01	ci left: 2.163379e-04	ci right 2.565594e-04	k: 540	n:2290000
Cons ci ratio: 9.673330e-02	ci left: 6.819237e-04	ci right 7.516633e-04	k: 1640	n:2290000
KS ci ratio: 4.102342e-03	ci left: 2.844778e-01	ci right 2.856476e-01	k: 652793	n:2290000
PDZD9   2290000 perm   2197 sec   (1043 perm/sec)   p_kst 2.850624e-01   p_cons 7.161572e-04   p_joint 2.358079e-04

Joint ci ratio: 1.682034e-01	ci left: 2.162302e-04	ci right 2.563501e-04	k: 542	n:2300000
Cons ci ratio: 9.643985e-02	ci left: 6.832016e-04	ci right 7.528480e-04	k: 1650	n:2300000
KS ci ratio: 4.093539e-03	ci left: 2.844666e-01	ci right 2.856339e-01	k: 655615	n:2300000
PDZD9   2300000 perm   2214 sec   (1039 perm/sec)   p_kst 2.850500e-01   p_cons 7.173913e-04   p_joint 2.356522e-04

Joint ci ratio: 1.680488e-01	ci left: 2.157088e-04	ci right 2.556915e-04	k: 543	n:2310000
Cons ci ratio: 9.629419e-02	ci left: 6.823564e-04	ci right 7.518056e-04	k: 1655	n:2310000
KS ci ratio: 4.084780e-03	ci left: 2.844569e-01	ci right 2.856216e-01	k: 658440	n:2310000
PDZD9   2310000 perm   2231 sec   (1035 perm/sec)   p_kst 2.850390e-01   p_cons 7.164502e-04   p_joint 2.350649e-04

Joint ci ratio: 1.680489e-01	ci left: 2.147790e-04	ci right 2.545894e-04	k: 543	n:2320000
Cons ci ratio: 9.614919e-02	ci left: 6.815185e-04	ci right 7.507721e-04	k: 1660	n:2320000
KS ci ratio: 4.075939e-03	ci left: 2.844610e-01	ci right 2.856232e-01	k: 661297	n:2320000
PDZD9   2320000 perm   2249 sec   (1032 perm/sec)   p_kst 2.850418e-01   p_cons 7.155172e-04   p_joint 2.340517e-04

Joint ci ratio: 1.678947e-01	ci left: 2.142684e-04	ci right 2.539440e-04	k: 544	n:2330000
Cons ci ratio: 9.591846e-02	ci left: 6.819445e-04	ci right 7.510658e-04	k: 1668	n:2330000
KS ci ratio: 4.067458e-03	ci left: 2.844346e-01	ci right 2.855943e-01	k: 664083	n:2330000
PDZD9   2330000 perm   2266 sec   (1028 perm/sec)   p_kst 2.850142e-01   p_cons 7.158798e-04   p_joint 2.334764e-04

Joint ci ratio: 1.675875e-01	ci left: 2.141715e-04	ci right 2.537493e-04	k: 546	n:2340000
Cons ci ratio: 9.574654e-02	ci left: 6.815329e-04	ci right 7.504816e-04	k: 1674	n:2340000
KS ci ratio: 4.059120e-03	ci left: 2.843995e-01	ci right 2.855566e-01	k: 666848	n:2340000
PDZD9   2340000 perm   2284 sec   (1024 perm/sec)   p_kst 2.849778e-01   p_cons 7.153846e-04   p_joint 2.333333e-04

Joint ci ratio: 1.674345e-01	ci left: 2.136678e-04	ci right 2.531129e-04	k: 547	n:2350000
Cons ci ratio: 9.557553e-02	ci left: 6.811248e-04	ci right 7.499024e-04	k: 1680	n:2350000
KS ci ratio: 4.050478e-03	ci left: 2.844004e-01	ci right 2.855551e-01	k: 669697	n:2350000
PDZD9   2350000 perm   2302 sec   (1021 perm/sec)   p_kst 2.849774e-01   p_cons 7.148936e-04   p_joint 2.327660e-04

Joint ci ratio: 1.672820e-01	ci left: 2.131684e-04	ci right 2.524818e-04	k: 548	n:2360000
Cons ci ratio: 9.549045e-02	ci left: 6.794795e-04	ci right 7.480264e-04	k: 1683	n:2360000
KS ci ratio: 4.041424e-03	ci left: 2.844483e-01	ci right 2.856006e-01	k: 672657	n:2360000
PDZD9   2360000 perm   2320 sec   (1017 perm/sec)   p_kst 2.850242e-01   p_cons 7.131356e-04   p_joint 2.322034e-04

Joint ci ratio: 1.666759e-01	ci left: 2.138862e-04	ci right 2.531747e-04	k: 552	n:2370000
Cons ci ratio: 9.515193e-02	ci left: 6.815551e-04	ci right 7.500541e-04	k: 1695	n:2370000
KS ci ratio: 4.032615e-03	ci left: 2.844772e-01	ci right 2.856271e-01	k: 675573	n:2370000
PDZD9   2370000 perm   2338 sec   (1014 perm/sec)   p_kst 2.850519e-01   p_cons 7.151899e-04   p_joint 2.329114e-04

Joint ci ratio: 1.662256e-01	ci left: 2.141955e-04	ci right 2.534239e-04	k: 555	n:2380000
Cons ci ratio: 9.501202e-02	ci left: 6.807423e-04	ci right 7.490534e-04	k: 1700	n:2380000
KS ci ratio: 4.024244e-03	ci left: 2.844673e-01	ci right 2.856148e-01	k: 678397	n:2380000
PDZD9   2380000 perm   2356 sec   (1010 perm/sec)   p_kst 2.850408e-01   p_cons 7.142857e-04   p_joint 2.331933e-04

Joint ci ratio: 1.657789e-01	ci left: 2.145024e-04	ci right 2.536709e-04	k: 558	n:2390000
Cons ci ratio: 9.478937e-02	ci left: 6.811619e-04	ci right 7.493460e-04	k: 1708	n:2390000
KS ci ratio: 4.016045e-03	ci left: 2.844453e-01	ci right 2.855904e-01	k: 681192	n:2390000
PDZD9   2390000 perm   2375 sec   (1007 perm/sec)   p_kst 2.850176e-01   p_cons 7.146444e-04   p_joint 2.334728e-04

Joint ci ratio: 1.653358e-01	ci left: 2.148069e-04	ci right 2.539157e-04	k: 561	n:2400000
Cons ci ratio: 9.448570e-02	ci left: 6.827986e-04	ci right 7.509154e-04	k: 1719	n:2400000
KS ci ratio: 4.007203e-03	ci left: 2.844939e-01	ci right 2.856366e-01	k: 684156	n:2400000
PDZD9   2400000 perm   2393 sec   (1003 perm/sec)   p_kst 2.850650e-01   p_cons 7.162500e-04   p_joint 2.337500e-04

Joint ci ratio: 1.650424e-01	ci left: 2.147111e-04	ci right 2.537262e-04	k: 563	n:2410000
Cons ci ratio: 9.432135e-02	ci left: 6.823962e-04	ci right 7.503480e-04	k: 1725	n:2410000
KS ci ratio: 3.998781e-03	ci left: 2.845052e-01	ci right 2.856455e-01	k: 687031	n:2410000
PDZD9   2410000 perm   2411 sec   (1000 perm/sec)   p_kst 2.850751e-01   p_cons 7.157676e-04   p_joint 2.336100e-04

Joint ci ratio: 1.647506e-01	ci left: 2.146162e-04	ci right 2.535383e-04	k: 565	n:2420000
Cons ci ratio: 9.415786e-02	ci left: 6.819973e-04	ci right 7.497852e-04	k: 1731	n:2420000
KS ci ratio: 3.990445e-03	ci left: 2.845131e-01	ci right 2.856511e-01	k: 689898	n:2420000
PDZD9   2420000 perm   2429 sec   (996 perm/sec)   p_kst 2.850818e-01   p_cons 7.152893e-04   p_joint 2.334711e-04

Joint ci ratio: 1.646053e-01	ci left: 2.141276e-04	ci right 2.529234e-04	k: 566	n:2430000
Cons ci ratio: 9.396816e-02	ci left: 6.820036e-04	ci right 7.496480e-04	k: 1738	n:2430000
KS ci ratio: 3.982161e-03	ci left: 2.845209e-01	ci right 2.856566e-01	k: 692765	n:2430000
PDZD9   2430000 perm   2448 sec   (993 perm/sec)   p_kst 2.850885e-01   p_cons 7.152263e-04   p_joint 2.329218e-04

Joint ci ratio: 1.640277e-01	ci left: 2.148219e-04	ci right 2.535935e-04	k: 570	n:2440000
Cons ci ratio: 9.377961e-02	ci left: 6.820101e-04	ci right 7.495119e-04	k: 1745	n:2440000
KS ci ratio: 3.973932e-03	ci left: 2.845283e-01	ci right 2.856616e-01	k: 695631	n:2440000
PDZD9   2440000 perm   2466 sec   (989 perm/sec)   p_kst 2.850947e-01   p_cons 7.151639e-04   p_joint 2.336066e-04

Joint ci ratio: 1.640277e-01	ci left: 2.139451e-04	ci right 2.525585e-04	k: 570	n:2450000
Cons ci ratio: 9.361891e-02	ci left: 6.816179e-04	ci right 7.489590e-04	k: 1751	n:2450000
KS ci ratio: 3.966036e-03	ci left: 2.845066e-01	ci right 2.856376e-01	k: 698426	n:2450000
PDZD9   2450000 perm   2485 sec   (986 perm/sec)   p_kst 2.850718e-01   p_cons 7.146939e-04   p_joint 2.326531e-04

Joint ci ratio: 1.634562e-01	ci left: 2.146348e-04	ci right 2.532244e-04	k: 574	n:2460000
Cons ci ratio: 9.335282e-02	ci left: 6.828171e-04	ci right 7.500745e-04	k: 1761	n:2460000
KS ci ratio: 3.957713e-03	ci left: 2.845339e-01	ci right 2.856626e-01	k: 701341	n:2460000
PDZD9   2460000 perm   2503 sec   (983 perm/sec)   p_kst 2.850980e-01   p_cons 7.158537e-04   p_joint 2.333333e-04

Joint ci ratio: 1.631726e-01	ci left: 2.145425e-04	ci right 2.530420e-04	k: 576	n:2470000
Cons ci ratio: 9.314160e-02	ci left: 6.832160e-04	ci right 7.503521e-04	k: 1769	n:2470000
KS ci ratio: 3.949952e-03	ci left: 2.845083e-01	ci right 2.856347e-01	k: 704126	n:2470000
PDZD9   2470000 perm   2522 sec   (979 perm/sec)   p_kst 2.850713e-01   p_cons 7.161943e-04   p_joint 2.331984e-04

Joint ci ratio: 1.623307e-01	ci left: 2.159982e-04	ci right 2.545394e-04	k: 582	n:2480000
Cons ci ratio: 9.290566e-02	ci left: 6.840058e-04	ci right 7.510399e-04	k: 1778	n:2480000
KS ci ratio: 3.941956e-03	ci left: 2.845120e-01	ci right 2.856361e-01	k: 706983	n:2480000
PDZD9   2480000 perm   2541 sec   (976 perm/sec)   p_kst 2.850738e-01   p_cons 7.169355e-04   p_joint 2.346774e-04

Joint ci ratio: 1.621917e-01	ci left: 2.155160e-04	ci right 2.539351e-04	k: 583	n:2490000
Cons ci ratio: 9.282750e-02	ci left: 6.824356e-04	ci right 7.492565e-04	k: 1781	n:2490000
KS ci ratio: 3.934233e-03	ci left: 2.844923e-01	ci right 2.856142e-01	k: 709782	n:2490000
PDZD9   2490000 perm   2560 sec   (973 perm/sec)   p_kst 2.850530e-01   p_cons 7.152610e-04   p_joint 2.341365e-04

Joint ci ratio: 1.619147e-01	ci left: 2.154215e-04	ci right 2.537517e-04	k: 585	n:2500000
Cons ci ratio: 9.259394e-02	ci left: 6.832224e-04	ci right 7.499429e-04	k: 1790	n:2500000
KS ci ratio: 3.926224e-03	ci left: 2.845072e-01	ci right 2.856269e-01	k: 712667	n:2500000
PDZD9   2500000 perm   2579 sec   (969 perm/sec)   p_kst 2.850668e-01   p_cons 7.160000e-04   p_joint 2.340000e-04

Joint ci ratio: 1.615018e-01	ci left: 2.157101e-04	ci right 2.539843e-04	k: 588	n:2510000
Cons ci ratio: 9.246500e-02	ci left: 6.824463e-04	ci right 7.489932e-04	k: 1795	n:2510000
KS ci ratio: 3.918512e-03	ci left: 2.844961e-01	ci right 2.856135e-01	k: 715487	n:2510000
PDZD9   2510000 perm   2598 sec   (966 perm/sec)   p_kst 2.850546e-01   p_cons 7.151394e-04   p_joint 2.342629e-04

Joint ci ratio: 1.610921e-01	ci left: 2.159966e-04	ci right 2.542149e-04	k: 591	n:2520000
Cons ci ratio: 9.220860e-02	ci left: 6.836148e-04	ci right 7.500809e-04	k: 1805	n:2520000
KS ci ratio: 3.910930e-03	ci left: 2.844764e-01	ci right 2.855915e-01	k: 718285	n:2520000
PDZD9   2520000 perm   2618 sec   (963 perm/sec)   p_kst 2.850337e-01   p_cons 7.162698e-04   p_joint 2.345238e-04

Joint ci ratio: 1.605505e-01	ci left: 2.166602e-04	ci right 2.548547e-04	k: 595	n:2530000
Cons ci ratio: 9.205583e-02	ci left: 6.832297e-04	ci right 7.495423e-04	k: 1811	n:2530000
KS ci ratio: 3.902937e-03	ci left: 2.845042e-01	ci right 2.856172e-01	k: 721203	n:2530000
PDZD9   2530000 perm   2637 sec   (959 perm/sec)   p_kst 2.850605e-01   p_cons 7.158103e-04   p_joint 2.351779e-04

Joint ci ratio: 1.600144e-01	ci left: 2.173189e-04	ci right 2.554893e-04	k: 599	n:2540000
Cons ci ratio: 9.195445e-02	ci left: 6.820783e-04	ci right 7.482024e-04	k: 1815	n:2540000
KS ci ratio: 3.895053e-03	ci left: 2.845256e-01	ci right 2.856363e-01	k: 724105	n:2540000
PDZD9   2540000 perm   2656 sec   (956 perm/sec)   p_kst 2.850807e-01   p_cons 7.145669e-04   p_joint 2.358268e-04

Joint ci ratio: 1.596158e-01	ci left: 2.175961e-04	ci right 2.557108e-04	k: 602	n:2550000
Cons ci ratio: 9.172740e-02	ci left: 6.828519e-04	ci right 7.488787e-04	k: 1824	n:2550000
KS ci ratio: 3.887419e-03	ci left: 2.845256e-01	ci right 2.856342e-01	k: 726953	n:2550000
PDZD9   2550000 perm   2675 sec   (953 perm/sec)   p_kst 2.850796e-01   p_cons 7.152941e-04   p_joint 2.360784e-04

Joint ci ratio: 1.592202e-01	ci left: 2.178712e-04	ci right 2.559305e-04	k: 605	n:2560000
Cons ci ratio: 9.160204e-02	ci left: 6.820928e-04	ci right 7.479513e-04	k: 1829	n:2560000
KS ci ratio: 3.879717e-03	ci left: 2.845373e-01	ci right 2.856437e-01	k: 729831	n:2560000
PDZD9   2560000 perm   2694 sec   (950 perm/sec)   p_kst 2.850902e-01   p_cons 7.144531e-04   p_joint 2.363281e-04

Joint ci ratio: 1.589582e-01	ci left: 2.177707e-04	ci right 2.557439e-04	k: 607	n:2570000
Cons ci ratio: 9.140246e-02	ci left: 6.824804e-04	ci right 7.482250e-04	k: 1837	n:2570000
KS ci ratio: 3.872199e-03	ci left: 2.845345e-01	ci right 2.856388e-01	k: 732672	n:2570000
PDZD9   2570000 perm   2714 sec   (947 perm/sec)   p_kst 2.850864e-01   p_cons 7.147860e-04   p_joint 2.361868e-04

Joint ci ratio: 1.584378e-01	ci left: 2.184155e-04	ci right 2.563645e-04	k: 611	n:2580000
Cons ci ratio: 9.108082e-02	ci left: 6.847589e-04	ci right 7.504786e-04	k: 1850	n:2580000
KS ci ratio: 3.864859e-03	ci left: 2.845174e-01	ci right 2.856195e-01	k: 735476	n:2580000
PDZD9   2580000 perm   2733 sec   (944 perm/sec)   p_kst 2.850682e-01   p_cons 7.170543e-04   p_joint 2.368217e-04

Joint ci ratio: 1.581795e-01	ci left: 2.183138e-04	ci right 2.561775e-04	k: 613	n:2590000
Cons ci ratio: 9.078692e-02	ci left: 6.866430e-04	ci right 7.523195e-04	k: 1862	n:2590000
KS ci ratio: 3.857693e-03	ci left: 2.844866e-01	ci right 2.855865e-01	k: 738244	n:2590000
PDZD9   2590000 perm   2753 sec   (941 perm/sec)   p_kst 2.850363e-01   p_cons 7.189189e-04   p_joint 2.366795e-04

Joint ci ratio: 1.580509e-01	ci left: 2.178435e-04	ci right 2.555920e-04	k: 614	n:2600000
Cons ci ratio: 9.061685e-02	ci left: 6.866333e-04	ci right 7.521793e-04	k: 1869	n:2600000
KS ci ratio: 3.850418e-03	ci left: 2.844717e-01	ci right 2.855695e-01	k: 741053	n:2600000
PDZD9   2600000 perm   2773 sec   (938 perm/sec)   p_kst 2.850204e-01   p_cons 7.188462e-04   p_joint 2.361538e-04

Joint ci ratio: 1.576668e-01	ci left: 2.181129e-04	ci right 2.558075e-04	k: 617	n:2610000
Cons ci ratio: 9.049598e-02	ci left: 6.858748e-04	ci right 7.512565e-04	k: 1874	n:2610000
KS ci ratio: 3.842674e-03	ci left: 2.845110e-01	ci right 2.856067e-01	k: 744003	n:2610000
PDZD9   2610000 perm   2793 sec   (935 perm/sec)   p_kst 2.850586e-01   p_cons 7.180077e-04   p_joint 2.363985e-04

Joint ci ratio: 1.575395e-01	ci left: 2.176470e-04	ci right 2.552279e-04	k: 618	n:2620000
Cons ci ratio: 9.032753e-02	ci left: 6.858683e-04	ci right 7.511213e-04	k: 1881	n:2620000
KS ci ratio: 3.834969e-03	ci left: 2.845507e-01	ci right 2.856444e-01	k: 746955	n:2620000
PDZD9   2620000 perm   2813 sec   (931 perm/sec)   p_kst 2.850973e-01   p_cons 7.179389e-04   p_joint 2.358779e-04

Joint ci ratio: 1.570329e-01	ci left: 2.182805e-04	ci right 2.558381e-04	k: 622	n:2630000
Cons ci ratio: 9.016002e-02	ci left: 6.858620e-04	ci right 7.509869e-04	k: 1888	n:2630000
KS ci ratio: 3.827729e-03	ci left: 2.845457e-01	ci right 2.856373e-01	k: 749790	n:2630000
PDZD9   2630000 perm   2833 sec   (928 perm/sec)   p_kst 2.850913e-01   p_cons 7.178707e-04   p_joint 2.365019e-04

Joint ci ratio: 1.569070e-01	ci left: 2.178176e-04	ci right 2.552627e-04	k: 623	n:2640000
Cons ci ratio: 9.001719e-02	ci left: 6.854855e-04	ci right 7.504662e-04	k: 1894	n:2640000
KS ci ratio: 3.820660e-03	ci left: 2.845267e-01	ci right 2.856162e-01	k: 752588	n:2640000
PDZD9   2640000 perm   2853 sec   (925 perm/sec)   p_kst 2.850712e-01   p_cons 7.174242e-04   p_joint 2.359848e-04

Joint ci ratio: 1.561579e-01	ci left: 2.191711e-04	ci right 2.566522e-04	k: 629	n:2650000
Cons ci ratio: 8.973344e-02	ci left: 6.873253e-04	ci right 7.522643e-04	k: 1906	n:2650000
KS ci ratio: 3.813345e-03	ci left: 2.845384e-01	ci right 2.856259e-01	k: 755467	n:2650000
PDZD9   2650000 perm   2874 sec   (922 perm/sec)   p_kst 2.850819e-01   p_cons 7.192453e-04   p_joint 2.373585e-04

Joint ci ratio: 1.559107e-01	ci left: 2.190697e-04	ci right 2.564686e-04	k: 631	n:2660000
Cons ci ratio: 8.959263e-02	ci left: 6.869465e-04	ci right 7.517424e-04	k: 1912	n:2660000
KS ci ratio: 3.805797e-03	ci left: 2.845793e-01	ci right 2.856648e-01	k: 758424	n:2660000
PDZD9   2660000 perm   2894 sec   (919 perm/sec)   p_kst 2.851218e-01   p_cons 7.187970e-04   p_joint 2.372180e-04

Joint ci ratio: 1.556646e-01	ci left: 2.189691e-04	ci right 2.562862e-04	k: 633	n:2670000
Cons ci ratio: 8.933609e-02	ci left: 6.884013e-04	ci right 7.531389e-04	k: 1923	n:2670000
KS ci ratio: 3.798717e-03	ci left: 2.845746e-01	ci right 2.856581e-01	k: 761260	n:2670000
PDZD9   2670000 perm   2914 sec   (916 perm/sec)   p_kst 2.851161e-01   p_cons 7.202247e-04   p_joint 2.370787e-04

Joint ci ratio: 1.550543e-01	ci left: 2.199452e-04	ci right 2.572681e-04	k: 638	n:2680000
Cons ci ratio: 8.912784e-02	ci left: 6.891160e-04	ci right 7.537618e-04	k: 1932	n:2680000
KS ci ratio: 3.791283e-03	ci left: 2.846121e-01	ci right 2.856936e-01	k: 764209	n:2680000
PDZD9   2680000 perm   2934 sec   (913 perm/sec)   p_kst 2.851526e-01   p_cons 7.208955e-04   p_joint 2.380597e-04

Joint ci ratio: 1.549331e-01	ci left: 2.194848e-04	ci right 2.566979e-04	k: 639	n:2690000
Cons ci ratio: 8.898986e-02	ci left: 6.887350e-04	ci right 7.532398e-04	k: 1938	n:2690000
KS ci ratio: 3.784335e-03	ci left: 2.846018e-01	ci right 2.856812e-01	k: 767030	n:2690000
PDZD9   2690000 perm   2955 sec   (910 perm/sec)   p_kst 2.851413e-01   p_cons 7.204461e-04   p_joint 2.375465e-04

Joint ci ratio: 1.546916e-01	ci left: 2.193840e-04	ci right 2.565165e-04	k: 641	n:2700000
Cons ci ratio: 8.882966e-02	ci left: 6.887191e-04	ci right 7.531003e-04	k: 1945	n:2700000
KS ci ratio: 3.777209e-03	ci left: 2.846148e-01	ci right 2.856923e-01	k: 769914	n:2700000
PDZD9   2700000 perm   2975 sec   (907 perm/sec)   p_kst 2.851533e-01   p_cons 7.203704e-04   p_joint 2.374074e-04

Joint ci ratio: 1.542119e-01	ci left: 2.199934e-04	ci right 2.571030e-04	k: 645	n:2710000
Cons ci ratio: 8.862493e-02	ci left: 6.894250e-04	ci right 7.537160e-04	k: 1954	n:2710000
KS ci ratio: 3.770283e-03	ci left: 2.846105e-01	ci right 2.856859e-01	k: 772751	n:2710000
PDZD9   2710000 perm   2996 sec   (905 perm/sec)   p_kst 2.851480e-01   p_cons 7.210332e-04   p_joint 2.380074e-04

Joint ci ratio: 1.537366e-01	ci left: 2.205986e-04	ci right 2.576850e-04	k: 649	n:2720000
Cons ci ratio: 8.842161e-02	ci left: 6.901260e-04	ci right 7.543270e-04	k: 1963	n:2720000
KS ci ratio: 3.763436e-03	ci left: 2.846017e-01	ci right 2.856752e-01	k: 775576	n:2720000
PDZD9   2720000 perm   3017 sec   (902 perm/sec)   p_kst 2.851382e-01   p_cons 7.216912e-04   p_joint 2.386029e-04

Joint ci ratio: 1.533831e-01	ci left: 2.208472e-04	ci right 2.578821e-04	k: 652	n:2730000
Cons ci ratio: 8.821968e-02	ci left: 6.908219e-04	ci right 7.549334e-04	k: 1972	n:2730000
KS ci ratio: 3.756386e-03	ci left: 2.846191e-01	ci right 2.856906e-01	k: 778472	n:2730000
PDZD9   2730000 perm   3037 sec   (899 perm/sec)   p_kst 2.851546e-01   p_cons 7.223443e-04   p_joint 2.388278e-04

Joint ci ratio: 1.527991e-01	ci left: 2.217961e-04	ci right 2.588356e-04	k: 657	n:2740000
Cons ci ratio: 8.797471e-02	ci left: 6.922269e-04	ci right 7.562812e-04	k: 1983	n:2740000
KS ci ratio: 3.749661e-03	ci left: 2.846052e-01	ci right 2.856748e-01	k: 781283	n:2740000
PDZD9   2740000 perm   3058 sec   (896 perm/sec)   p_kst 2.851398e-01   p_cons 7.237226e-04   p_joint 2.397810e-04

Joint ci ratio: 1.527992e-01	ci left: 2.209896e-04	ci right 2.578944e-04	k: 657	n:2750000
Cons ci ratio: 8.788622e-02	ci left: 6.911322e-04	ci right 7.550176e-04	k: 1987	n:2750000
KS ci ratio: 3.742926e-03	ci left: 2.845966e-01	ci right 2.856642e-01	k: 784108	n:2750000
PDZD9   2750000 perm   3079 sec   (893 perm/sec)   p_kst 2.851302e-01   p_cons 7.225455e-04   p_joint 2.389091e-04

Joint ci ratio: 1.525675e-01	ci left: 2.208858e-04	ci right 2.577123e-04	k: 659	n:2760000
Cons ci ratio: 8.777594e-02	ci left: 6.903999e-04	ci right 7.541334e-04	k: 1992	n:2760000
KS ci ratio: 3.736256e-03	ci left: 2.845848e-01	ci right 2.856504e-01	k: 786924	n:2760000
PDZD9   2760000 perm   3099 sec   (890 perm/sec)   p_kst 2.851174e-01   p_cons 7.217391e-04   p_joint 2.387681e-04

Joint ci ratio: 1.523369e-01	ci left: 2.207829e-04	ci right 2.575315e-04	k: 661	n:2770000
Cons ci ratio: 8.762220e-02	ci left: 6.903791e-04	ci right 7.539934e-04	k: 1999	n:2770000
KS ci ratio: 3.729549e-03	ci left: 2.845810e-01	ci right 2.856447e-01	k: 789762	n:2770000
PDZD9   2770000 perm   3120 sec   (888 perm/sec)   p_kst 2.851126e-01   p_cons 7.216606e-04   p_joint 2.386282e-04

Joint ci ratio: 1.519929e-01	ci left: 2.210267e-04	ci right 2.577253e-04	k: 664	n:2780000
Cons ci ratio: 8.744747e-02	ci left: 6.907105e-04	ci right 7.542219e-04	k: 2007	n:2780000
KS ci ratio: 3.722806e-03	ci left: 2.845852e-01	ci right 2.856469e-01	k: 792622	n:2780000
PDZD9   2780000 perm   3141 sec   (885 perm/sec)   p_kst 2.851158e-01   p_cons 7.219424e-04   p_joint 2.388489e-04

Joint ci ratio: 1.515378e-01	ci left: 2.216138e-04	ci right 2.582897e-04	k: 668	n:2790000
Cons ci ratio: 8.720886e-02	ci left: 6.920914e-04	ci right 7.555473e-04	k: 2018	n:2790000
KS ci ratio: 3.716057e-03	ci left: 2.845939e-01	ci right 2.856538e-01	k: 795495	n:2790000
PDZD9   2790000 perm   3162 sec   (882 perm/sec)   p_kst 2.851237e-01   p_cons 7.232975e-04   p_joint 2.394265e-04

Joint ci ratio: 1.513118e-01	ci left: 2.215095e-04	ci right 2.581085e-04	k: 670	n:2800000
Cons ci ratio: 8.710111e-02	ci left: 6.913664e-04	ci right 7.546735e-04	k: 2023	n:2800000
KS ci ratio: 3.709085e-03	ci left: 2.846312e-01	ci right 2.856892e-01	k: 798448	n:2800000
PDZD9   2800000 perm   3183 sec   (880 perm/sec)   p_kst 2.851600e-01   p_cons 7.225000e-04   p_joint 2.392857e-04

Joint ci ratio: 1.511992e-01	ci left: 2.210636e-04	ci right 2.575593e-04	k: 671	n:2810000
Cons ci ratio: 8.695089e-02	ci left: 6.913429e-04	ci right 7.545332e-04	k: 2030	n:2810000
KS ci ratio: 3.702494e-03	ci left: 2.846305e-01	ci right 2.856867e-01	k: 801295	n:2810000
PDZD9   2810000 perm   3205 sec   (877 perm/sec)   p_kst 2.851584e-01   p_cons 7.224199e-04   p_joint 2.387900e-04

Joint ci ratio: 1.508628e-01	ci left: 2.213034e-04	ci right 2.577500e-04	k: 674	n:2820000
Cons ci ratio: 8.680144e-02	ci left: 6.913197e-04	ci right 7.543937e-04	k: 2037	n:2820000
KS ci ratio: 3.695935e-03	ci left: 2.846302e-01	ci right 2.856844e-01	k: 804143	n:2820000
PDZD9   2820000 perm   3227 sec   (874 perm/sec)   p_kst 2.851571e-01   p_cons 7.223404e-04   p_joint 2.390071e-04

Joint ci ratio: 1.506398e-01	ci left: 2.212014e-04	ci right 2.575726e-04	k: 676	n:2830000
Cons ci ratio: 8.661038e-02	ci left: 6.919881e-04	ci right 7.549771e-04	k: 2046	n:2830000
KS ci ratio: 3.689590e-03	ci left: 2.846101e-01	ci right 2.856624e-01	k: 806935	n:2830000
PDZD9   2830000 perm   3248 sec   (871 perm/sec)   p_kst 2.851360e-01   p_cons 7.229682e-04   p_joint 2.388693e-04

Joint ci ratio: 1.501967e-01	ci left: 2.217780e-04	ci right 2.581270e-04	k: 680	n:2840000
Cons ci ratio: 8.639956e-02	ci left: 6.929965e-04	ci right 7.559160e-04	k: 2056	n:2840000
KS ci ratio: 3.683099e-03	ci left: 2.846098e-01	ci right 2.856603e-01	k: 809783	n:2840000
PDZD9   2840000 perm   3270 sec   (869 perm/sec)   p_kst 2.851349e-01   p_cons 7.239437e-04   p_joint 2.394366e-04

Joint ci ratio: 1.501968e-01	ci left: 2.209998e-04	ci right 2.572213e-04	k: 680	n:2850000
Cons ci ratio: 8.625292e-02	ci left: 6.929681e-04	ci right 7.557728e-04	k: 2063	n:2850000
KS ci ratio: 3.676782e-03	ci left: 2.845941e-01	ci right 2.856428e-01	k: 812587	n:2850000
PDZD9   2850000 perm   3292 sec   (866 perm/sec)   p_kst 2.851182e-01   p_cons 7.238596e-04   p_joint 2.385965e-04

Joint ci ratio: 1.499767e-01	ci left: 2.209001e-04	ci right 2.570475e-04	k: 682	n:2860000
Cons ci ratio: 8.610704e-02	ci left: 6.929399e-04	ci right 7.556306e-04	k: 2070	n:2860000
KS ci ratio: 3.670588e-03	ci left: 2.845684e-01	ci right 2.856152e-01	k: 815362	n:2860000
PDZD9   2860000 perm   3313 sec   (863 perm/sec)   p_kst 2.850916e-01   p_cons 7.237762e-04   p_joint 2.384615e-04

Joint ci ratio: 1.496484e-01	ci left: 2.211366e-04	ci right 2.572363e-04	k: 685	n:2870000
Cons ci ratio: 8.583796e-02	ci left: 6.949578e-04	ci right 7.576246e-04	k: 2083	n:2870000
KS ci ratio: 3.664388e-03	ci left: 2.845471e-01	ci right 2.855920e-01	k: 818149	n:2870000
PDZD9   2870000 perm   3335 sec   (861 perm/sec)   p_kst 2.850693e-01   p_cons 7.257840e-04   p_joint 2.386760e-04

Joint ci ratio: 1.493222e-01	ci left: 2.213714e-04	ci right 2.574237e-04	k: 688	n:2880000
Cons ci ratio: 8.565318e-02	ci left: 6.956027e-04	ci right 7.581860e-04	k: 2092	n:2880000
KS ci ratio: 3.657752e-03	ci left: 2.845779e-01	ci right 2.856211e-01	k: 821086	n:2880000
PDZD9   2880000 perm   3357 sec   (858 perm/sec)   p_kst 2.850993e-01   p_cons 7.263889e-04   p_joint 2.388889e-04

Joint ci ratio: 1.489982e-01	ci left: 2.216048e-04	ci right 2.576098e-04	k: 691	n:2890000
Cons ci ratio: 8.546959e-02	ci left: 6.962433e-04	ci right 7.587433e-04	k: 2101	n:2890000
KS ci ratio: 3.651210e-03	ci left: 2.846020e-01	ci right 2.856434e-01	k: 824004	n:2890000
PDZD9   2890000 perm   3379 sec   (855 perm/sec)   p_kst 2.851225e-01   p_cons 7.269896e-04   p_joint 2.391003e-04

Joint ci ratio: 1.487833e-01	ci left: 2.215046e-04	ci right 2.574368e-04	k: 693	n:2900000
Cons ci ratio: 8.536816e-02	ci left: 6.955298e-04	ci right 7.578879e-04	k: 2106	n:2900000
KS ci ratio: 3.645098e-03	ci left: 2.845818e-01	ci right 2.856214e-01	k: 826794	n:2900000
PDZD9   2900000 perm   3401 sec   (853 perm/sec)   p_kst 2.851014e-01   p_cons 7.262069e-04   p_joint 2.389655e-04

Joint ci ratio: 1.486763e-01	ci left: 2.210742e-04	ci right 2.569086e-04	k: 694	n:2910000
Cons ci ratio: 8.522670e-02	ci left: 6.954939e-04	ci right 7.577403e-04	k: 2113	n:2910000
KS ci ratio: 3.638974e-03	ci left: 2.845666e-01	ci right 2.856043e-01	k: 829598	n:2910000
PDZD9   2910000 perm   3423 sec   (850 perm/sec)   p_kst 2.850852e-01   p_cons 7.261168e-04   p_joint 2.384880e-04

Joint ci ratio: 1.486764e-01	ci left: 2.203171e-04	ci right 2.560287e-04	k: 694	n:2920000
Cons ci ratio: 8.514624e-02	ci left: 6.944527e-04	ci right 7.565443e-04	k: 2117	n:2920000
KS ci ratio: 3.632905e-03	ci left: 2.845487e-01	ci right 2.855846e-01	k: 832394	n:2920000
PDZD9   2920000 perm   3445 sec   (848 perm/sec)   p_kst 2.850664e-01   p_cons 7.250000e-04   p_joint 2.376712e-04

Joint ci ratio: 1.486764e-01	ci left: 2.195652e-04	ci right 2.551549e-04	k: 694	n:2930000
Cons ci ratio: 8.504594e-02	ci left: 6.937527e-04	ci right 7.557051e-04	k: 2122	n:2930000
KS ci ratio: 3.626778e-03	ci left: 2.845408e-01	ci right 2.855750e-01	k: 835219	n:2930000
PDZD9   2930000 perm   3467 sec   (845 perm/sec)   p_kst 2.850577e-01   p_cons 7.242321e-04   p_joint 2.368601e-04

Joint ci ratio: 1.483565e-01	ci left: 2.198009e-04	ci right 2.553454e-04	k: 697	n:2940000
Cons ci ratio: 8.480653e-02	ci left: 6.953880e-04	ci right 7.573029e-04	k: 2134	n:2940000
KS ci ratio: 3.620803e-03	ci left: 2.845194e-01	ci right 2.855518e-01	k: 838004	n:2940000
PDZD9   2940000 perm   3489 sec   (843 perm/sec)   p_kst 2.850354e-01   p_cons 7.258503e-04   p_joint 2.370748e-04

Joint ci ratio: 1.478280e-01	ci left: 2.206879e-04	ci right 2.562374e-04	k: 702	n:2950000
Cons ci ratio: 8.458885e-02	ci left: 6.966806e-04	ci right 7.585435e-04	k: 2145	n:2950000
KS ci ratio: 3.614942e-03	ci left: 2.844886e-01	ci right 2.855192e-01	k: 840761	n:2950000
PDZD9   2950000 perm   3512 sec   (840 perm/sec)   p_kst 2.850037e-01   p_cons 7.271186e-04   p_joint 2.379661e-04

Joint ci ratio: 1.477230e-01	ci left: 2.202677e-04	ci right 2.557221e-04	k: 703	n:2960000
Cons ci ratio: 8.449051e-02	ci left: 6.959804e-04	ci right 7.577058e-04	k: 2150	n:2960000
KS ci ratio: 3.608675e-03	ci left: 2.845071e-01	ci right 2.855359e-01	k: 843663	n:2960000
PDZD9   2960000 perm   3535 sec   (837 perm/sec)   p_kst 2.850213e-01   p_cons 7.263514e-04   p_joint 2.375000e-04

Joint ci ratio: 1.474092e-01	ci left: 2.204988e-04	ci right 2.559084e-04	k: 706	n:2970000
Cons ci ratio: 8.431428e-02	ci left: 6.966034e-04	ci right 7.582488e-04	k: 2159	n:2970000
KS ci ratio: 3.602705e-03	ci left: 2.844954e-01	ci right 2.855225e-01	k: 846476	n:2970000
PDZD9   2970000 perm   3558 sec   (835 perm/sec)   p_kst 2.850088e-01   p_cons 7.269360e-04   p_joint 2.377104e-04

Joint ci ratio: 1.473051e-01	ci left: 2.200821e-04	ci right 2.553976e-04	k: 707	n:2980000
Cons ci ratio: 8.423637e-02	ci left: 6.955798e-04	ci right 7.570750e-04	k: 2163	n:2980000
KS ci ratio: 3.596374e-03	ci left: 2.845281e-01	ci right 2.855535e-01	k: 849421	n:2980000
PDZD9   2980000 perm   3580 sec   (832 perm/sec)   p_kst 2.850406e-01   p_cons 7.258389e-04   p_joint 2.372483e-04

Joint ci ratio: 1.473052e-01	ci left: 2.193460e-04	ci right 2.545435e-04	k: 707	n:2990000
Cons ci ratio: 8.411985e-02	ci left: 6.952179e-04	ci right 7.565919e-04	k: 2169	n:2990000
KS ci ratio: 3.590486e-03	ci left: 2.845141e-01	ci right 2.855378e-01	k: 852227	n:2990000
PDZD9   2990000 perm   3603 sec   (830 perm/sec)   p_kst 2.850258e-01   p_cons 7.254181e-04   p_joint 2.364548e-04

Joint ci ratio: 1.470975e-01	ci left: 2.192570e-04	ci right 2.543862e-04	k: 709	n:3000000
Cons ci ratio: 8.400381e-02	ci left: 6.948584e-04	ci right 7.561119e-04	k: 2175	n:3000000
KS ci ratio: 3.584293e-03	ci left: 2.845382e-01	ci right 2.855602e-01	k: 855147	n:3000000
PDZD9   3000000 perm   3626 sec   (827 perm/sec)   p_kst 2.850490e-01   p_cons 7.250000e-04   p_joint 2.363333e-04

Joint ci ratio: 1.468908e-01	ci left: 2.191686e-04	ci right 2.542299e-04	k: 711	n:3010000
Cons ci ratio: 8.384981e-02	ci left: 6.951520e-04	ci right 7.563135e-04	k: 2183	n:3010000
KS ci ratio: 3.578367e-03	ci left: 2.845352e-01	ci right 2.855555e-01	k: 857986	n:3010000
PDZD9   3010000 perm   3648 sec   (825 perm/sec)   p_kst 2.850452e-01   p_cons 7.252492e-04   p_joint 2.362126e-04

Joint ci ratio: 1.465823e-01	ci left: 2.193998e-04	ci right 2.544179e-04	k: 714	n:3020000
Cons ci ratio: 8.369665e-02	ci left: 6.954436e-04	ci right 7.565136e-04	k: 2191	n:3020000
KS ci ratio: 3.572308e-03	ci left: 2.845508e-01	ci right 2.855695e-01	k: 860881	n:3020000
PDZD9   3020000 perm   3670 sec   (823 perm/sec)   p_kst 2.850599e-01   p_cons 7.254967e-04   p_joint 2.364238e-04

Joint ci ratio: 1.463777e-01	ci left: 2.193115e-04	ci right 2.542625e-04	k: 716	n:3030000
Cons ci ratio: 8.356333e-02	ci left: 6.954104e-04	ci right 7.563754e-04	k: 2198	n:3030000
KS ci ratio: 3.566344e-03	ci left: 2.845591e-01	ci right 2.855760e-01	k: 863754	n:3030000
PDZD9   3030000 perm   3693 sec   (820 perm/sec)   p_kst 2.850673e-01   p_cons 7.254125e-04   p_joint 2.363036e-04

Joint ci ratio: 1.461740e-01	ci left: 2.192239e-04	ci right 2.541081e-04	k: 718	n:3040000
Cons ci ratio: 8.343065e-02	ci left: 6.953774e-04	ci right 7.562380e-04	k: 2205	n:3040000
KS ci ratio: 3.560461e-03	ci left: 2.845613e-01	ci right 2.855766e-01	k: 866609	n:3040000
PDZD9   3040000 perm   3716 sec   (818 perm/sec)   p_kst 2.850687e-01   p_cons 7.253289e-04   p_joint 2.361842e-04

Joint ci ratio: 1.458700e-01	ci left: 2.194528e-04	ci right 2.542944e-04	k: 721	n:3050000
Cons ci ratio: 8.327977e-02	ci left: 6.956657e-04	ci right 7.564362e-04	k: 2213	n:3050000
KS ci ratio: 3.554561e-03	ci left: 2.845688e-01	ci right 2.855824e-01	k: 869480	n:3050000
PDZD9   3050000 perm   3739 sec   (816 perm/sec)   p_kst 2.850754e-01   p_cons 7.255738e-04   p_joint 2.363934e-04

Joint ci ratio: 1.456684e-01	ci left: 2.193654e-04	ci right 2.541408e-04	k: 723	n:3060000
Cons ci ratio: 8.312970e-02	ci left: 6.959523e-04	ci right 7.566329e-04	k: 2221	n:3060000
KS ci ratio: 3.548560e-03	ci left: 2.845913e-01	ci right 2.856033e-01	k: 872397	n:3060000
PDZD9   3060000 perm   3762 sec   (813 perm/sec)   p_kst 2.850971e-01   p_cons 7.258170e-04   p_joint 2.362745e-04

Joint ci ratio: 1.456684e-01	ci left: 2.186509e-04	ci right 2.533130e-04	k: 723	n:3070000
Cons ci ratio: 8.303636e-02	ci left: 6.952802e-04	ci right 7.558308e-04	k: 2226	n:3070000
KS ci ratio: 3.542906e-03	ci left: 2.845771e-01	ci right 2.855875e-01	k: 875202	n:3070000
PDZD9   3070000 perm   3785 sec   (811 perm/sec)   p_kst 2.850821e-01   p_cons 7.250814e-04   p_joint 2.355049e-04

Joint ci ratio: 1.454677e-01	ci left: 2.185667e-04	ci right 2.531636e-04	k: 725	n:3080000
Cons ci ratio: 8.294333e-02	ci left: 6.946125e-04	ci right 7.550339e-04	k: 2231	n:3080000
KS ci ratio: 3.536986e-03	ci left: 2.845968e-01	ci right 2.856055e-01	k: 878111	n:3080000
PDZD9   3080000 perm   3808 sec   (809 perm/sec)   p_kst 2.851010e-01   p_cons 7.243506e-04   p_joint 2.353896e-04

Joint ci ratio: 1.451680e-01	ci left: 2.187949e-04	ci right 2.533504e-04	k: 728	n:3090000
Cons ci ratio: 8.277659e-02	ci left: 6.952168e-04	ci right 7.555634e-04	k: 2240	n:3090000
KS ci ratio: 3.531289e-03	ci left: 2.845941e-01	ci right 2.856011e-01	k: 880951	n:3090000
PDZD9   3090000 perm   3831 sec   (807 perm/sec)   p_kst 2.850974e-01   p_cons 7.249191e-04   p_joint 2.355987e-04

Joint ci ratio: 1.450686e-01	ci left: 2.184000e-04	ci right 2.528674e-04	k: 729	n:3100000
Cons ci ratio: 8.268443e-02	ci left: 6.945537e-04	ci right 7.547723e-04	k: 2245	n:3100000
KS ci ratio: 3.525575e-03	ci left: 2.845965e-01	ci right 2.856020e-01	k: 883807	n:3100000
PDZD9   3100000 perm   3855 sec   (804 perm/sec)   p_kst 2.850990e-01   p_cons 7.241935e-04   p_joint 2.351613e-04

Joint ci ratio: 1.448703e-01	ci left: 2.183175e-04	ci right 2.527208e-04	k: 731	n:3110000
Cons ci ratio: 8.261094e-02	ci left: 6.935800e-04	ci right 7.536582e-04	k: 2249	n:3110000
KS ci ratio: 3.519669e-03	ci left: 2.846243e-01	ci right 2.856282e-01	k: 886742	n:3110000
PDZD9   3110000 perm   3878 sec   (802 perm/sec)   p_kst 2.851260e-01   p_cons 7.231511e-04   p_joint 2.350482e-04

Joint ci ratio: 1.444761e-01	ci left: 2.188534e-04	ci right 2.532392e-04	k: 735	n:3120000
Cons ci ratio: 8.237324e-02	ci left: 6.954377e-04	ci right 7.554952e-04	k: 2262	n:3120000
KS ci ratio: 3.513793e-03	ci left: 2.846519e-01	ci right 2.856542e-01	k: 889677	n:3120000
PDZD9   3120000 perm   3901 sec   (800 perm/sec)   p_kst 2.851529e-01   p_cons 7.250000e-04   p_joint 2.355769e-04

Joint ci ratio: 1.438906e-01	ci left: 2.200020e-04	ci right 2.544161e-04	k: 741	n:3130000
Cons ci ratio: 8.222802e-02	ci left: 6.957192e-04	ci right 7.556900e-04	k: 2270	n:3130000
KS ci ratio: 3.508099e-03	ci left: 2.846615e-01	ci right 2.856622e-01	k: 892556	n:3130000
PDZD9   3130000 perm   3924 sec   (798 perm/sec)   p_kst 2.851617e-01   p_cons 7.252396e-04   p_joint 2.367412e-04

Joint ci ratio: 1.436971e-01	ci left: 2.199154e-04	ci right 2.542657e-04	k: 743	n:3140000
Cons ci ratio: 8.213768e-02	ci left: 6.950631e-04	ci right 7.549084e-04	k: 2275	n:3140000
KS ci ratio: 3.502292e-03	ci left: 2.846876e-01	ci right 2.856867e-01	k: 895487	n:3140000
PDZD9   3140000 perm   3948 sec   (795 perm/sec)   p_kst 2.851869e-01   p_cons 7.245223e-04   p_joint 2.366242e-04

Joint ci ratio: 1.435044e-01	ci left: 2.198293e-04	ci right 2.541163e-04	k: 745	n:3150000
Cons ci ratio: 8.195779e-02	ci left: 6.959661e-04	ci right 7.557516e-04	k: 2285	n:3150000
KS ci ratio: 3.496779e-03	ci left: 2.846824e-01	ci right 2.856799e-01	k: 898320	n:3150000
PDZD9   3150000 perm   3972 sec   (793 perm/sec)   p_kst 2.851810e-01   p_cons 7.253968e-04   p_joint 2.365079e-04

Joint ci ratio: 1.433124e-01	ci left: 2.197439e-04	ci right 2.539677e-04	k: 747	n:3160000
Cons ci ratio: 8.183260e-02	ci left: 6.959335e-04	ci right 7.556205e-04	k: 2292	n:3160000
KS ci ratio: 3.491160e-03	ci left: 2.846927e-01	ci right 2.856887e-01	k: 901202	n:3160000
PDZD9   3160000 perm   3995 sec   (791 perm/sec)   p_kst 2.851905e-01   p_cons 7.253165e-04   p_joint 2.363924e-04

Joint ci ratio: 1.430259e-01	ci left: 2.199632e-04	ci right 2.541468e-04	k: 750	n:3170000
Cons ci ratio: 8.174355e-02	ci left: 6.952831e-04	ci right 7.548464e-04	k: 2297	n:3170000
KS ci ratio: 3.485762e-03	ci left: 2.846803e-01	ci right 2.856747e-01	k: 904012	n:3170000
PDZD9   3170000 perm   4019 sec   (789 perm/sec)   p_kst 2.851773e-01   p_cons 7.246057e-04   p_joint 2.365931e-04

Joint ci ratio: 1.429308e-01	ci left: 2.195747e-04	ci right 2.536733e-04	k: 751	n:3180000
Cons ci ratio: 8.169030e-02	ci left: 6.940208e-04	ci right 7.534353e-04	k: 2300	n:3180000
KS ci ratio: 3.480237e-03	ci left: 2.846859e-01	ci right 2.856787e-01	k: 906879	n:3180000
PDZD9   3180000 perm   4044 sec   (786 perm/sec)   p_kst 2.851821e-01   p_cons 7.232704e-04   p_joint 2.361635e-04

Joint ci ratio: 1.424579e-01	ci left: 2.203978e-04	ci right 2.545014e-04	k: 756	n:3190000
Cons ci ratio: 8.149569e-02	ci left: 6.952231e-04	ci right 7.545921e-04	k: 2311	n:3190000
KS ci ratio: 3.475009e-03	ci left: 2.846594e-01	ci right 2.856507e-01	k: 909644	n:3190000
PDZD9   3190000 perm   4068 sec   (784 perm/sec)   p_kst 2.851549e-01   p_cons 7.244514e-04   p_joint 2.369906e-04

Joint ci ratio: 1.420830e-01	ci left: 2.209146e-04	ci right 2.550005e-04	k: 760	n:3200000
Cons ci ratio: 8.133751e-02	ci left: 6.958058e-04	ci right 7.551037e-04	k: 2320	n:3200000
KS ci ratio: 3.469505e-03	ci left: 2.846685e-01	ci right 2.856582e-01	k: 912522	n:3200000
PDZD9   3200000 perm   4092 sec   (782 perm/sec)   p_kst 2.851631e-01   p_cons 7.250000e-04   p_joint 2.375000e-04

Joint ci ratio: 1.417110e-01	ci left: 2.214282e-04	ci right 2.554964e-04	k: 764	n:3210000
Cons ci ratio: 8.118025e-02	ci left: 6.963849e-04	ci right 7.556121e-04	k: 2329	n:3210000
KS ci ratio: 3.464088e-03	ci left: 2.846703e-01	ci right 2.856584e-01	k: 915377	n:3210000
PDZD9   3210000 perm   4116 sec   (780 perm/sec)   p_kst 2.851642e-01   p_cons 7.255452e-04   p_joint 2.380062e-04

Joint ci ratio: 1.413419e-01	ci left: 2.219388e-04	ci right 2.559892e-04	k: 768	n:3220000
Cons ci ratio: 8.102389e-02	ci left: 6.969606e-04	ci right 7.561171e-04	k: 2338	n:3220000
KS ci ratio: 3.458848e-03	ci left: 2.846541e-01	ci right 2.856407e-01	k: 918174	n:3220000
PDZD9   3220000 perm   4141 sec   (778 perm/sec)   p_kst 2.851472e-01   p_cons 7.260870e-04   p_joint 2.385093e-04

Joint ci ratio: 1.411585e-01	ci left: 2.218490e-04	ci right 2.558377e-04	k: 770	n:3230000
Cons ci ratio: 8.086844e-02	ci left: 6.975328e-04	ci right 7.566190e-04	k: 2347	n:3230000
KS ci ratio: 3.453696e-03	ci left: 2.846306e-01	ci right 2.856156e-01	k: 920947	n:3230000
PDZD9   3230000 perm   4165 sec   (776 perm/sec)   p_kst 2.851229e-01   p_cons 7.266254e-04   p_joint 2.383901e-04

Joint ci ratio: 1.406123e-01	ci left: 2.229509e-04	ci right 2.569651e-04	k: 776	n:3240000
Cons ci ratio: 8.069674e-02	ci left: 6.984040e-04	ci right 7.574325e-04	k: 2357	n:3240000
KS ci ratio: 3.448266e-03	ci left: 2.846427e-01	ci right 2.856262e-01	k: 923835	n:3240000
PDZD9   3240000 perm   4189 sec   (773 perm/sec)   p_kst 2.851343e-01   p_cons 7.274691e-04   p_joint 2.395062e-04

Joint ci ratio: 1.405220e-01	ci left: 2.225617e-04	ci right 2.564930e-04	k: 777	n:3250000
Cons ci ratio: 8.059429e-02	ci left: 6.980640e-04	ci right 7.569853e-04	k: 2363	n:3250000
KS ci ratio: 3.443041e-03	ci left: 2.846335e-01	ci right 2.856155e-01	k: 926654	n:3250000
PDZD9   3250000 perm   4214 sec   (771 perm/sec)   p_kst 2.851243e-01   p_cons 7.270769e-04   p_joint 2.390769e-04

Joint ci ratio: 1.404318e-01	ci left: 2.221750e-04	ci right 2.560237e-04	k: 778	n:3260000
Cons ci ratio: 8.047523e-02	ci left: 6.980267e-04	ci right 7.568537e-04	k: 2370	n:3260000
KS ci ratio: 3.437728e-03	ci left: 2.846376e-01	ci right 2.856180e-01	k: 929516	n:3260000
PDZD9   3260000 perm   4238 sec   (769 perm/sec)   p_kst 2.851276e-01   p_cons 7.269939e-04   p_joint 2.386503e-04

Joint ci ratio: 1.399832e-01	ci left: 2.229710e-04	ci right 2.568234e-04	k: 783	n:3270000
Cons ci ratio: 8.025544e-02	ci left: 6.997877e-04	ci right 7.585946e-04	k: 2383	n:3270000
KS ci ratio: 3.432458e-03	ci left: 2.846394e-01	ci right 2.856184e-01	k: 932371	n:3270000
PDZD9   3270000 perm   4262 sec   (767 perm/sec)   p_kst 2.851287e-01   p_cons 7.287462e-04   p_joint 2.394495e-04

Joint ci ratio: 1.398940e-01	ci left: 2.225854e-04	ci right 2.563560e-04	k: 784	n:3280000
Cons ci ratio: 8.013788e-02	ci left: 6.997456e-04	ci right 7.584587e-04	k: 2390	n:3280000
KS ci ratio: 3.427148e-03	ci left: 2.846489e-01	ci right 2.856264e-01	k: 935251	n:3280000
PDZD9   3280000 perm   4287 sec   (765 perm/sec)   p_kst 2.851375e-01   p_cons 7.286585e-04   p_joint 2.390244e-04

Joint ci ratio: 1.397162e-01	ci left: 2.224955e-04	ci right 2.562059e-04	k: 786	n:3290000
Cons ci ratio: 8.000414e-02	ci left: 7.000016e-04	ci right 7.586336e-04	k: 2398	n:3290000
KS ci ratio: 3.421922e-03	ci left: 2.846514e-01	ci right 2.856274e-01	k: 938108	n:3290000
PDZD9   3290000 perm   4312 sec   (763 perm/sec)   p_kst 2.851392e-01   p_cons 7.288754e-04   p_joint 2.389058e-04

Joint ci ratio: 1.394506e-01	ci left: 2.226986e-04	ci right 2.563704e-04	k: 789	n:3300000
Cons ci ratio: 7.983789e-02	ci left: 7.008502e-04	ci right 7.594256e-04	k: 2408	n:3300000
KS ci ratio: 3.416650e-03	ci left: 2.846620e-01	ci right 2.856365e-01	k: 940992	n:3300000
PDZD9   3300000 perm   4336 sec   (761 perm/sec)   p_kst 2.851491e-01   p_cons 7.296970e-04   p_joint 2.390909e-04

Joint ci ratio: 1.392744e-01	ci left: 2.226090e-04	ci right 2.562211e-04	k: 791	n:3310000
Cons ci ratio: 7.968914e-02	ci left: 7.013976e-04	ci right 7.599045e-04	k: 2417	n:3310000
KS ci ratio: 3.411534e-03	ci left: 2.846569e-01	ci right 2.856299e-01	k: 943824	n:3310000
PDZD9   3310000 perm   4361 sec   (759 perm/sec)   p_kst 2.851432e-01   p_cons 7.302115e-04   p_joint 2.389728e-04

Joint ci ratio: 1.391866e-01	ci left: 2.222292e-04	ci right 2.557611e-04	k: 792	n:3320000
Cons ci ratio: 7.950846e-02	ci left: 7.025323e-04	ci right 7.609948e-04	k: 2428	n:3320000
KS ci ratio: 3.406590e-03	ci left: 2.846340e-01	ci right 2.856056e-01	k: 946597	n:3320000
PDZD9   3320000 perm   4385 sec   (757 perm/sec)   p_kst 2.851196e-01   p_cons 7.313253e-04   p_joint 2.385542e-04

Joint ci ratio: 1.388369e-01	ci left: 2.227212e-04	ci right 2.562360e-04	k: 796	n:3330000
Cons ci ratio: 7.937784e-02	ci left: 7.027772e-04	ci right 7.611596e-04	k: 2436	n:3330000
KS ci ratio: 3.401399e-03	ci left: 2.846434e-01	ci right 2.856135e-01	k: 949477	n:3330000
PDZD9   3330000 perm   4411 sec   (755 perm/sec)   p_kst 2.851282e-01   p_cons 7.315315e-04   p_joint 2.390390e-04

Joint ci ratio: 1.384898e-01	ci left: 2.232105e-04	ci right 2.567079e-04	k: 800	n:3340000
Cons ci ratio: 7.923165e-02	ci left: 7.033143e-04	ci right 7.616288e-04	k: 2445	n:3340000
KS ci ratio: 3.396252e-03	ci left: 2.846503e-01	ci right 2.856190e-01	k: 952349	n:3340000
PDZD9   3340000 perm   4436 sec   (753 perm/sec)   p_kst 2.851344e-01   p_cons 7.320359e-04   p_joint 2.395210e-04

Joint ci ratio: 1.383172e-01	ci left: 2.231205e-04	ci right 2.565593e-04	k: 802	n:3350000
Cons ci ratio: 7.911852e-02	ci left: 7.032630e-04	ci right 7.614861e-04	k: 2452	n:3350000
KS ci ratio: 3.391222e-03	ci left: 2.846458e-01	ci right 2.856130e-01	k: 955183	n:3350000
PDZD9   3350000 perm   4461 sec   (751 perm/sec)   p_kst 2.851293e-01   p_cons 7.319403e-04   p_joint 2.394030e-04

Joint ci ratio: 1.381453e-01	ci left: 2.230311e-04	ci right 2.564115e-04	k: 804	n:3360000
Cons ci ratio: 7.900588e-02	ci left: 7.032121e-04	ci right 7.613443e-04	k: 2459	n:3360000
KS ci ratio: 3.386138e-03	ci left: 2.846506e-01	ci right 2.856164e-01	k: 958048	n:3360000
PDZD9   3360000 perm   4486 sec   (749 perm/sec)   p_kst 2.851333e-01   p_cons 7.318452e-04   p_joint 2.392857e-04

Joint ci ratio: 1.380596e-01	ci left: 2.226558e-04	ci right 2.559577e-04	k: 805	n:3370000
Cons ci ratio: 7.892574e-02	ci left: 7.025798e-04	ci right 7.605981e-04	k: 2464	n:3370000
KS ci ratio: 3.381308e-03	ci left: 2.846275e-01	ci right 2.855918e-01	k: 960819	n:3370000
PDZD9   3370000 perm   4511 sec   (747 perm/sec)   p_kst 2.851095e-01   p_cons 7.311573e-04   p_joint 2.388724e-04

Joint ci ratio: 1.380596e-01	ci left: 2.219970e-04	ci right 2.552004e-04	k: 805	n:3380000
Cons ci ratio: 7.890981e-02	ci left: 7.007912e-04	ci right 7.586496e-04	k: 2465	n:3380000
KS ci ratio: 3.376182e-03	ci left: 2.846427e-01	ci right 2.856056e-01	k: 963719	n:3380000
PDZD9   3380000 perm   4537 sec   (745 perm/sec)   p_kst 2.851240e-01   p_cons 7.292899e-04   p_joint 2.381657e-04

Joint ci ratio: 1.376333e-01	ci left: 2.227662e-04	ci right 2.559733e-04	k: 810	n:3390000
Cons ci ratio: 7.881400e-02	ci left: 7.004590e-04	ci right 7.582165e-04	k: 2471	n:3390000
KS ci ratio: 3.371234e-03	ci left: 2.846392e-01	ci right 2.856007e-01	k: 966556	n:3390000
PDZD9   3390000 perm   4562 sec   (743 perm/sec)   p_kst 2.851198e-01   p_cons 7.289086e-04   p_joint 2.389381e-04

Joint ci ratio: 1.371269e-01	ci left: 2.238151e-04	ci right 2.570458e-04	k: 816	n:3400000
Cons ci ratio: 7.870265e-02	ci left: 7.004171e-04	ci right 7.580858e-04	k: 2478	n:3400000
KS ci ratio: 3.366377e-03	ci left: 2.846272e-01	ci right 2.855873e-01	k: 969364	n:3400000
PDZD9   3400000 perm   4588 sec   (741 perm/sec)   p_kst 2.851071e-01   p_cons 7.288235e-04   p_joint 2.400000e-04

Joint ci ratio: 1.365432e-01	ci left: 2.251413e-04	ci right 2.584150e-04	k: 823	n:3410000
Cons ci ratio: 7.854436e-02	ci left: 7.012380e-04	ci right 7.588528e-04	k: 2488	n:3410000
KS ci ratio: 3.361365e-03	ci left: 2.846367e-01	ci right 2.855953e-01	k: 972245	n:3410000
PDZD9   3410000 perm   4613 sec   (739 perm/sec)   p_kst 2.851158e-01   p_cons 7.296188e-04   p_joint 2.413490e-04

Joint ci ratio: 1.363778e-01	ci left: 2.250478e-04	ci right 2.582641e-04	k: 825	n:3420000
Cons ci ratio: 7.843415e-02	ci left: 7.011942e-04	ci right 7.587209e-04	k: 2495	n:3420000
KS ci ratio: 3.356325e-03	ci left: 2.846523e-01	ci right 2.856095e-01	k: 975147	n:3420000
PDZD9   3420000 perm   4638 sec   (737 perm/sec)   p_kst 2.851307e-01   p_cons 7.295322e-04   p_joint 2.412281e-04

Joint ci ratio: 1.362953e-01	ci left: 2.246733e-04	ci right 2.578127e-04	k: 826	n:3430000
Cons ci ratio: 7.834006e-02	ci left: 7.008649e-04	ci right 7.582925e-04	k: 2501	n:3430000
KS ci ratio: 3.351432e-03	ci left: 2.846526e-01	ci right 2.856084e-01	k: 977997	n:3430000
PDZD9   3430000 perm   4663 sec   (736 perm/sec)   p_kst 2.851303e-01   p_cons 7.291545e-04   p_joint 2.408163e-04

Joint ci ratio: 1.360488e-01	ci left: 2.248626e-04	ci right 2.579650e-04	k: 829	n:3440000
Cons ci ratio: 7.823070e-02	ci left: 7.008225e-04	ci right 7.581628e-04	k: 2508	n:3440000
KS ci ratio: 3.346584e-03	ci left: 2.846500e-01	ci right 2.856045e-01	k: 980837	n:3440000
PDZD9   3440000 perm   4689 sec   (734 perm/sec)   p_kst 2.851270e-01   p_cons 7.290698e-04   p_joint 2.409884e-04

Joint ci ratio: 1.358851e-01	ci left: 2.247708e-04	ci right 2.578167e-04	k: 831	n:3450000
Cons ci ratio: 7.819960e-02	ci left: 6.993595e-04	ci right 7.565563e-04	k: 2510	n:3450000
KS ci ratio: 3.341731e-03	ci left: 2.846506e-01	ci right 2.856037e-01	k: 983688	n:3450000
PDZD9   3450000 perm   4714 sec   (732 perm/sec)   p_kst 2.851270e-01   p_cons 7.275362e-04   p_joint 2.408696e-04

Joint ci ratio: 1.356408e-01	ci left: 2.249587e-04	ci right 2.579680e-04	k: 834	n:3460000
Cons ci ratio: 7.812189e-02	ci left: 6.987550e-04	ci right 7.558431e-04	k: 2515	n:3460000
KS ci ratio: 3.336984e-03	ci left: 2.846408e-01	ci right 2.855925e-01	k: 986503	n:3460000
PDZD9   3460000 perm   4740 sec   (730 perm/sec)   p_kst 2.851165e-01   p_cons 7.268786e-04   p_joint 2.410405e-04

Joint ci ratio: 1.353170e-01	ci left: 2.254241e-04	ci right 2.584164e-04	k: 838	n:3470000
Cons ci ratio: 7.799797e-02	ci left: 6.990018e-04	ci right 7.560153e-04	k: 2523	n:3470000
KS ci ratio: 3.332281e-03	ci left: 2.846282e-01	ci right 2.855785e-01	k: 989308	n:3470000
PDZD9   3470000 perm   4766 sec   (728 perm/sec)   p_kst 2.851032e-01   p_cons 7.270893e-04   p_joint 2.414986e-04

Joint ci ratio: 1.353171e-01	ci left: 2.247763e-04	ci right 2.576738e-04	k: 838	n:3480000
Cons ci ratio: 7.798260e-02	ci left: 6.972749e-04	ci right 7.541359e-04	k: 2524	n:3480000
KS ci ratio: 3.327472e-03	ci left: 2.846312e-01	ci right 2.855801e-01	k: 992167	n:3480000
PDZD9   3480000 perm   4792 sec   (726 perm/sec)   p_kst 2.851055e-01   p_cons 7.252874e-04   p_joint 2.408046e-04

Joint ci ratio: 1.351561e-01	ci left: 2.246860e-04	ci right 2.575279e-04	k: 840	n:3490000
Cons ci ratio: 7.789012e-02	ci left: 6.969627e-04	ci right 7.537277e-04	k: 2530	n:3490000
KS ci ratio: 3.322766e-03	ci left: 2.846238e-01	ci right 2.855714e-01	k: 994990	n:3490000
PDZD9   3490000 perm   4818 sec   (724 perm/sec)   p_kst 2.850974e-01   p_cons 7.249284e-04   p_joint 2.406877e-04

Joint ci ratio: 1.348358e-01	ci left: 2.251483e-04	ci right 2.579736e-04	k: 844	n:3500000
Cons ci ratio: 7.769079e-02	ci left: 6.986134e-04	ci right 7.553607e-04	k: 2543	n:3500000
KS ci ratio: 3.317877e-03	ci left: 2.846416e-01	ci right 2.855879e-01	k: 997901	n:3500000
PDZD9   3500000 perm   4844 sec   (723 perm/sec)   p_kst 2.851146e-01   p_cons 7.265714e-04   p_joint 2.411429e-04

Joint ci ratio: 1.346765e-01	ci left: 2.250574e-04	ci right 2.578276e-04	k: 846	n:3510000
Cons ci ratio: 7.761458e-02	ci left: 6.980199e-04	ci right 7.546608e-04	k: 2548	n:3510000
KS ci ratio: 3.313129e-03	ci left: 2.846445e-01	ci right 2.855894e-01	k: 1000760	n:3510000
PDZD9   3510000 perm   4871 sec   (721 perm/sec)   p_kst 2.851168e-01   p_cons 7.259259e-04   p_joint 2.410256e-04

Joint ci ratio: 1.345971e-01	ci left: 2.246926e-04	ci right 2.573888e-04	k: 847	n:3520000
Cons ci ratio: 7.752341e-02	ci left: 6.977084e-04	ci right 7.542545e-04	k: 2554	n:3520000
KS ci ratio: 3.308247e-03	ci left: 2.846665e-01	ci right 2.856100e-01	k: 1003686	n:3520000
PDZD9   3520000 perm   4897 sec   (719 perm/sec)   p_kst 2.851381e-01   p_cons 7.255682e-04   p_joint 2.406250e-04

Joint ci ratio: 1.343597e-01	ci left: 2.248773e-04	ci right 2.575381e-04	k: 850	n:3530000
Cons ci ratio: 7.741744e-02	ci left: 6.976765e-04	ci right 7.541392e-04	k: 2561	n:3530000
KS ci ratio: 3.303359e-03	ci left: 2.846917e-01	ci right 2.856339e-01	k: 1006624	n:3530000
PDZD9   3530000 perm   4924 sec   (717 perm/sec)   p_kst 2.851626e-01   p_cons 7.254958e-04   p_joint 2.407932e-04

Joint ci ratio: 1.342021e-01	ci left: 2.247881e-04	ci right 2.573945e-04	k: 852	n:3540000
Cons ci ratio: 7.732696e-02	ci left: 6.973677e-04	ci right 7.537366e-04	k: 2567	n:3540000
KS ci ratio: 3.298533e-03	ci left: 2.847116e-01	ci right 2.856526e-01	k: 1009544	n:3540000
PDZD9   3540000 perm   4950 sec   (715 perm/sec)   p_kst 2.851819e-01   p_cons 7.251412e-04   p_joint 2.406780e-04

Joint ci ratio: 1.340450e-01	ci left: 2.246993e-04	ci right 2.572517e-04	k: 854	n:3550000
Cons ci ratio: 7.725181e-02	ci left: 6.967845e-04	ci right 7.530491e-04	k: 2572	n:3550000
KS ci ratio: 3.293932e-03	ci left: 2.847064e-01	ci right 2.856460e-01	k: 1012375	n:3550000
PDZD9   3550000 perm   4977 sec   (713 perm/sec)   p_kst 2.851761e-01   p_cons 7.245070e-04   p_joint 2.405634e-04

Joint ci ratio: 1.337325e-01	ci left: 2.251541e-04	ci right 2.576903e-04	k: 858	n:3560000
Cons ci ratio: 7.714694e-02	ci left: 6.967556e-04	ci right 7.529380e-04	k: 2579	n:3560000
KS ci ratio: 3.289191e-03	ci left: 2.847209e-01	ci right 2.856592e-01	k: 1015276	n:3560000
PDZD9   3560000 perm   5004 sec   (711 perm/sec)   p_kst 2.851899e-01   p_cons 7.244382e-04   p_joint 2.410112e-04

Joint ci ratio: 1.335771e-01	ci left: 2.250649e-04	ci right 2.575474e-04	k: 860	n:3570000
Cons ci ratio: 7.702761e-02	ci left: 6.970016e-04	ci right 7.531130e-04	k: 2587	n:3570000
KS ci ratio: 3.284477e-03	ci left: 2.847345e-01	ci right 2.856715e-01	k: 1018174	n:3570000
PDZD9   3570000 perm   5030 sec   (710 perm/sec)   p_kst 2.852028e-01   p_cons 7.246499e-04   p_joint 2.408964e-04

Joint ci ratio: 1.334222e-01	ci left: 2.249762e-04	ci right 2.574053e-04	k: 862	n:3580000
Cons ci ratio: 7.690882e-02	ci left: 6.972463e-04	ci right 7.532870e-04	k: 2595	n:3580000
KS ci ratio: 3.279897e-03	ci left: 2.847337e-01	ci right 2.856694e-01	k: 1021021	n:3580000
PDZD9   3580000 perm   5057 sec   (708 perm/sec)   p_kst 2.852014e-01   p_cons 7.248603e-04   p_joint 2.407821e-04

Joint ci ratio: 1.332679e-01	ci left: 2.248881e-04	ci right 2.572640e-04	k: 864	n:3590000
Cons ci ratio: 7.682011e-02	ci left: 6.969433e-04	ci right 7.528921e-04	k: 2601	n:3590000
KS ci ratio: 3.275400e-03	ci left: 2.847252e-01	ci right 2.856596e-01	k: 1023840	n:3590000
PDZD9   3590000 perm   5084 sec   (706 perm/sec)   p_kst 2.851922e-01   p_cons 7.245125e-04   p_joint 2.406685e-04

Joint ci ratio: 1.330374e-01	ci left: 2.250690e-04	ci right 2.574105e-04	k: 867	n:3600000
Cons ci ratio: 7.674643e-02	ci left: 6.963696e-04	ci right 7.522163e-04	k: 2606	n:3600000
KS ci ratio: 3.270776e-03	ci left: 2.847347e-01	ci right 2.856678e-01	k: 1026724	n:3600000
PDZD9   3600000 perm   5111 sec   (704 perm/sec)   p_kst 2.852011e-01   p_cons 7.238889e-04   p_joint 2.408333e-04

Joint ci ratio: 1.328081e-01	ci left: 2.252489e-04	ci right 2.575561e-04	k: 870	n:3610000
Cons ci ratio: 7.655573e-02	ci left: 6.979727e-04	ci right 7.538027e-04	k: 2619	n:3610000
KS ci ratio: 3.266347e-03	ci left: 2.847224e-01	ci right 2.856542e-01	k: 1029529	n:3610000
PDZD9   3610000 perm   5137 sec   (703 perm/sec)   p_kst 2.851881e-01   p_cons 7.254848e-04   p_joint 2.409972e-04

Joint ci ratio: 1.326559e-01	ci left: 2.251608e-04	ci right 2.574154e-04	k: 872	n:3620000
Cons ci ratio: 7.648281e-02	ci left: 6.973994e-04	ci right 7.531280e-04	k: 2624	n:3620000
KS ci ratio: 3.261985e-03	ci left: 2.847040e-01	ci right 2.856345e-01	k: 1032312	n:3620000
PDZD9   3620000 perm   5164 sec   (701 perm/sec)   p_kst 2.851691e-01   p_cons 7.248619e-04   p_joint 2.408840e-04

Joint ci ratio: 1.322776e-01	ci left: 2.258723e-04	ci right 2.581293e-04	k: 877	n:3630000
Cons ci ratio: 7.633751e-02	ci left: 6.981803e-04	ci right 7.538607e-04	k: 2634	n:3630000
KS ci ratio: 3.257655e-03	ci left: 2.846838e-01	ci right 2.856130e-01	k: 1035088	n:3630000
PDZD9   3630000 perm   5191 sec   (699 perm/sec)   p_kst 2.851482e-01   p_cons 7.256198e-04   p_joint 2.415978e-04

Joint ci ratio: 1.319773e-01	ci left: 2.263144e-04	ci right 2.585553e-04	k: 881	n:3640000
Cons ci ratio: 7.620746e-02	ci left: 6.986876e-04	ci right 7.543094e-04	k: 2643	n:3640000
KS ci ratio: 3.253181e-03	ci left: 2.846840e-01	ci right 2.856119e-01	k: 1037938	n:3640000
PDZD9   3640000 perm   5217 sec   (698 perm/sec)   p_kst 2.851478e-01   p_cons 7.260989e-04   p_joint 2.420330e-04

Joint ci ratio: 1.318279e-01	ci left: 2.262242e-04	ci right 2.584130e-04	k: 883	n:3650000
Cons ci ratio: 7.612115e-02	ci left: 6.983860e-04	ci right 7.539179e-04	k: 2649	n:3650000
KS ci ratio: 3.248829e-03	ci left: 2.846711e-01	ci right 2.855977e-01	k: 1040740	n:3650000
PDZD9   3650000 perm   5244 sec   (696 perm/sec)   p_kst 2.851342e-01   p_cons 7.257534e-04   p_joint 2.419178e-04

Joint ci ratio: 1.316048e-01	ci left: 2.263988e-04	ci right 2.585536e-04	k: 886	n:3660000
Cons ci ratio: 7.596362e-02	ci left: 6.994261e-04	ci right 7.549206e-04	k: 2660	n:3660000
KS ci ratio: 3.244476e-03	ci left: 2.846607e-01	ci right 2.855861e-01	k: 1043551	n:3660000
PDZD9   3660000 perm   5271 sec   (694 perm/sec)   p_kst 2.851232e-01   p_cons 7.267760e-04   p_joint 2.420765e-04

Joint ci ratio: 1.313827e-01	ci left: 2.265724e-04	ci right 2.586934e-04	k: 889	n:3670000
Cons ci ratio: 7.589237e-02	ci left: 6.988569e-04	ci right 7.542519e-04	k: 2665	n:3670000
KS ci ratio: 3.239988e-03	ci left: 2.846695e-01	ci right 2.855935e-01	k: 1046432	n:3670000
PDZD9   3670000 perm   5299 sec   (693 perm/sec)   p_kst 2.851313e-01   p_cons 7.261580e-04   p_joint 2.422343e-04

Joint ci ratio: 1.312354e-01	ci left: 2.264824e-04	ci right 2.585518e-04	k: 891	n:3680000
Cons ci ratio: 7.577875e-02	ci left: 6.990905e-04	ci right 7.544174e-04	k: 2673	n:3680000
KS ci ratio: 3.235428e-03	ci left: 2.846896e-01	ci right 2.856124e-01	k: 1049355	n:3680000
PDZD9   3680000 perm   5326 sec   (691 perm/sec)   p_kst 2.851508e-01   p_cons 7.263587e-04   p_joint 2.421196e-04

Joint ci ratio: 1.310152e-01	ci left: 2.266549e-04	ci right 2.586907e-04	k: 894	n:3690000
Cons ci ratio: 7.569389e-02	ci left: 6.987911e-04	ci right 7.540297e-04	k: 2679	n:3690000
KS ci ratio: 3.231081e-03	ci left: 2.846852e-01	ci right 2.856068e-01	k: 1052188	n:3690000
PDZD9   3690000 perm   5354 sec   (689 perm/sec)   p_kst 2.851458e-01   p_cons 7.260163e-04   p_joint 2.422764e-04

Joint ci ratio: 1.309421e-01	ci left: 2.263038e-04	ci right 2.582707e-04	k: 895	n:3700000
Cons ci ratio: 7.562340e-02	ci left: 6.982283e-04	ci right 7.533687e-04	k: 2684	n:3700000
KS ci ratio: 3.226693e-03	ci left: 2.846881e-01	ci right 2.856084e-01	k: 1055048	n:3700000
PDZD9   3700000 perm   5381 sec   (688 perm/sec)   p_kst 2.851481e-01   p_cons 7.254054e-04   p_joint 2.418919e-04

Joint ci ratio: 1.307962e-01	ci left: 2.262152e-04	ci right 2.581313e-04	k: 897	n:3710000
Cons ci ratio: 7.553906e-02	ci left: 6.979330e-04	ci right 7.529859e-04	k: 2690	n:3710000
KS ci ratio: 3.222309e-03	ci left: 2.846929e-01	ci right 2.856120e-01	k: 1057915	n:3710000
PDZD9   3710000 perm   5409 sec   (686 perm/sec)   p_kst 2.851523e-01   p_cons 7.250674e-04   p_joint 2.417790e-04

Joint ci ratio: 1.305783e-01	ci left: 2.263872e-04	ci right 2.582702e-04	k: 900	n:3720000
Cons ci ratio: 7.544101e-02	ci left: 6.979030e-04	ci right 7.528790e-04	k: 2697	n:3720000
KS ci ratio: 3.217851e-03	ci left: 2.847092e-01	ci right 2.856271e-01	k: 1060825	n:3720000
PDZD9   3720000 perm   5436 sec   (684 perm/sec)   p_kst 2.851680e-01   p_cons 7.250000e-04   p_joint 2.419355e-04

Joint ci ratio: 1.305059e-01	ci left: 2.260396e-04	ci right 2.578546e-04	k: 901	n:3730000
Cons ci ratio: 7.538518e-02	ci left: 6.970841e-04	ci right 7.519531e-04	k: 2701	n:3730000
KS ci ratio: 3.213413e-03	ci left: 2.847252e-01	ci right 2.856419e-01	k: 1063734	n:3730000
PDZD9   3730000 perm   5464 sec   (683 perm/sec)   p_kst 2.851834e-01   p_cons 7.241287e-04   p_joint 2.415550e-04

Joint ci ratio: 1.302894e-01	ci left: 2.262112e-04	ci right 2.579935e-04	k: 904	n:3740000
Cons ci ratio: 7.528772e-02	ci left: 6.970566e-04	ci right 7.518495e-04	k: 2708	n:3740000
KS ci ratio: 3.208941e-03	ci left: 2.847478e-01	ci right 2.856632e-01	k: 1066668	n:3740000
PDZD9   3740000 perm   5492 sec   (681 perm/sec)   p_kst 2.852053e-01   p_cons 7.240642e-04   p_joint 2.417112e-04

Joint ci ratio: 1.301457e-01	ci left: 2.261239e-04	ci right 2.578562e-04	k: 906	n:3750000
Cons ci ratio: 7.508007e-02	ci left: 6.991226e-04	ci right 7.539197e-04	k: 2723	n:3750000
KS ci ratio: 3.204593e-03	ci left: 2.847569e-01	ci right 2.856712e-01	k: 1069552	n:3750000
PDZD9   3750000 perm   5519 sec   (679 perm/sec)   p_kst 2.852139e-01   p_cons 7.261333e-04   p_joint 2.416000e-04

Joint ci ratio: 1.297173e-01	ci left: 2.270664e-04	ci right 2.588180e-04	k: 912	n:3760000
Cons ci ratio: 7.487412e-02	ci left: 7.011779e-04	ci right 7.559787e-04	k: 2738	n:3760000
KS ci ratio: 3.200254e-03	ci left: 2.847671e-01	ci right 2.856801e-01	k: 1072440	n:3760000
PDZD9   3760000 perm   5548 sec   (678 perm/sec)   p_kst 2.852234e-01   p_cons 7.281915e-04   p_joint 2.425532e-04

Joint ci ratio: 1.296463e-01	ci left: 2.267207e-04	ci right 2.584053e-04	k: 913	n:3770000
Cons ci ratio: 7.479226e-02	ci left: 7.008797e-04	ci right 7.555947e-04	k: 2744	n:3770000
KS ci ratio: 3.195999e-03	ci left: 2.847687e-01	ci right 2.856805e-01	k: 1075296	n:3770000
PDZD9   3770000 perm   5576 sec   (676 perm/sec)   p_kst 2.852244e-01   p_cons 7.278515e-04   p_joint 2.421751e-04

Joint ci ratio: 1.293636e-01	ci left: 2.271449e-04	ci right 2.588141e-04	k: 917	n:3780000
Cons ci ratio: 7.460220e-02	ci left: 7.026601e-04	ci right 7.573687e-04	k: 2758	n:3780000
KS ci ratio: 3.191802e-03	ci left: 2.847650e-01	ci right 2.856756e-01	k: 1078132	n:3780000
PDZD9   3780000 perm   5604 sec   (674 perm/sec)   p_kst 2.852201e-01   p_cons 7.296296e-04   p_joint 2.425926e-04

Joint ci ratio: 1.290826e-01	ci left: 2.275668e-04	ci right 2.592208e-04	k: 921	n:3790000
Cons ci ratio: 7.446734e-02	ci left: 7.033955e-04	ci right 7.580580e-04	k: 2768	n:3790000
KS ci ratio: 3.187552e-03	ci left: 2.847703e-01	ci right 2.856797e-01	k: 1081002	n:3790000
PDZD9   3790000 perm   5633 sec   (673 perm/sec)   p_kst 2.852248e-01   p_cons 7.303430e-04   p_joint 2.430079e-04

Joint ci ratio: 1.290127e-01	ci left: 2.272226e-04	ci right 2.588103e-04	k: 922	n:3800000
Cons ci ratio: 7.442707e-02	ci left: 7.023192e-04	ci right 7.568673e-04	k: 2771	n:3800000
KS ci ratio: 3.183333e-03	ci left: 2.847737e-01	ci right 2.856819e-01	k: 1083865	n:3800000
PDZD9   3800000 perm   5661 sec   (671 perm/sec)   p_kst 2.852276e-01   p_cons 7.292105e-04   p_joint 2.426316e-04

Joint ci ratio: 1.289429e-01	ci left: 2.268803e-04	ci right 2.584019e-04	k: 923	n:3810000
Cons ci ratio: 7.434667e-02	ci left: 7.020213e-04	ci right 7.564849e-04	k: 2777	n:3810000
KS ci ratio: 3.179110e-03	ci left: 2.847797e-01	ci right 2.856868e-01	k: 1086738	n:3810000
PDZD9   3810000 perm   5690 sec   (670 perm/sec)   p_kst 2.852331e-01   p_cons 7.288714e-04   p_joint 2.422572e-04

Joint ci ratio: 1.288036e-01	ci left: 2.267930e-04	ci right 2.582659e-04	k: 925	n:3820000
Cons ci ratio: 7.422651e-02	ci left: 7.024958e-04	ci right 7.569043e-04	k: 2786	n:3820000
KS ci ratio: 3.174880e-03	ci left: 2.847889e-01	ci right 2.856947e-01	k: 1089623	n:3820000
PDZD9   3820000 perm   5718 sec   (668 perm/sec)   p_kst 2.852416e-01   p_cons 7.293194e-04   p_joint 2.421466e-04

Joint ci ratio: 1.287341e-01	ci left: 2.264535e-04	ci right 2.578611e-04	k: 926	n:3830000
Cons ci ratio: 7.410693e-02	ci left: 7.029679e-04	ci right 7.573215e-04	k: 2795	n:3830000
KS ci ratio: 3.170628e-03	ci left: 2.848029e-01	ci right 2.857076e-01	k: 1092527	n:3830000
PDZD9   3830000 perm   5746 sec   (667 perm/sec)   p_kst 2.852551e-01   p_cons 7.297650e-04   p_joint 2.417755e-04

Joint ci ratio: 1.284572e-01	ci left: 2.268720e-04	ci right 2.582647e-04	k: 930	n:3840000
Cons ci ratio: 7.396155e-02	ci left: 7.039489e-04	ci right 7.582669e-04	k: 2806	n:3840000
KS ci ratio: 3.166651e-03	ci left: 2.847836e-01	ci right 2.856871e-01	k: 1095303	n:3840000
PDZD9   3840000 perm   5775 sec   (665 perm/sec)   p_kst 2.852352e-01   p_cons 7.307292e-04   p_joint 2.421875e-04

Joint ci ratio: 1.283195e-01	ci left: 2.267855e-04	ci right 2.581300e-04	k: 932	n:3850000
Cons ci ratio: 7.386951e-02	ci left: 7.039050e-04	ci right 7.581492e-04	k: 2813	n:3850000
KS ci ratio: 3.162627e-03	ci left: 2.847724e-01	ci right 2.856747e-01	k: 1098110	n:3850000
PDZD9   3850000 perm   5804 sec   (663 perm/sec)   p_kst 2.852234e-01   p_cons 7.306494e-04   p_joint 2.420779e-04

Joint ci ratio: 1.281137e-01	ci left: 2.269502e-04	ci right 2.582634e-04	k: 935	n:3860000
Cons ci ratio: 7.376472e-02	ci left: 7.041157e-04	ci right 7.582958e-04	k: 2821	n:3860000
KS ci ratio: 3.158647e-03	ci left: 2.847576e-01	ci right 2.856587e-01	k: 1100903	n:3860000
PDZD9   3860000 perm   5832 sec   (662 perm/sec)   p_kst 2.852080e-01   p_cons 7.308290e-04   p_joint 2.422280e-04

Joint ci ratio: 1.280453e-01	ci left: 2.266139e-04	ci right 2.578628e-04	k: 936	n:3870000
Cons ci ratio: 7.371253e-02	ci left: 7.033108e-04	ci right 7.573891e-04	k: 2825	n:3870000
KS ci ratio: 3.154608e-03	ci left: 2.847525e-01	ci right 2.856525e-01	k: 1103733	n:3870000
PDZD9   3870000 perm   5861 sec   (660 perm/sec)   p_kst 2.852023e-01   p_cons 7.299742e-04   p_joint 2.418605e-04

Joint ci ratio: 1.279770e-01	ci left: 2.262793e-04	ci right 2.574641e-04	k: 937	n:3880000
Cons ci ratio: 7.366045e-02	ci left: 7.025101e-04	ci right 7.564870e-04	k: 2829	n:3880000
KS ci ratio: 3.150430e-03	ci left: 2.847673e-01	ci right 2.856661e-01	k: 1106640	n:3880000
PDZD9   3880000 perm   5890 sec   (659 perm/sec)   p_kst 2.852165e-01   p_cons 7.291237e-04   p_joint 2.414948e-04

Joint ci ratio: 1.278408e-01	ci left: 2.261953e-04	ci right 2.573329e-04	k: 939	n:3890000
Cons ci ratio: 7.354358e-02	ci left: 7.029752e-04	ci right 7.568984e-04	k: 2838	n:3890000
KS ci ratio: 3.146539e-03	ci left: 2.847470e-01	ci right 2.856446e-01	k: 1109411	n:3890000
PDZD9   3890000 perm   5918 sec   (657 perm/sec)   p_kst 2.851956e-01   p_cons 7.295630e-04   p_joint 2.413882e-04

Joint ci ratio: 1.276373e-01	ci left: 2.263600e-04	ci right 2.574668e-04	k: 942	n:3900000
Cons ci ratio: 7.342727e-02	ci left: 7.034380e-04	ci right 7.573078e-04	k: 2847	n:3900000
KS ci ratio: 3.142522e-03	ci left: 2.847450e-01	ci right 2.856415e-01	k: 1112253	n:3900000
PDZD9   3900000 perm   5947 sec   (656 perm/sec)   p_kst 2.851931e-01   p_cons 7.300000e-04   p_joint 2.415385e-04

Joint ci ratio: 1.275022e-01	ci left: 2.262763e-04	ci right 2.573362e-04	k: 944	n:3910000
Cons ci ratio: 7.336292e-02	ci left: 7.028942e-04	ci right 7.566732e-04	k: 2852	n:3910000
KS ci ratio: 3.138436e-03	ci left: 2.847540e-01	ci right 2.856494e-01	k: 1115138	n:3910000
PDZD9   3910000 perm   5975 sec   (654 perm/sec)   p_kst 2.852015e-01   p_cons 7.294118e-04   p_joint 2.414322e-04

Joint ci ratio: 1.273003e-01	ci left: 2.264399e-04	ci right 2.574694e-04	k: 947	n:3920000
Cons ci ratio: 7.320908e-02	ci left: 7.041062e-04	ci right 7.578602e-04	k: 2864	n:3920000
KS ci ratio: 3.134534e-03	ci left: 2.847411e-01	ci right 2.856353e-01	k: 1117937	n:3920000
PDZD9   3920000 perm   6003 sec   (653 perm/sec)   p_kst 2.851880e-01   p_cons 7.306122e-04   p_joint 2.415816e-04

Joint ci ratio: 1.269658e-01	ci left: 2.270956e-04	ci right 2.581269e-04	k: 952	n:3930000
Cons ci ratio: 7.310707e-02	ci left: 7.043130e-04	ci right 7.580046e-04	k: 2872	n:3930000
KS ci ratio: 3.130270e-03	ci left: 2.847773e-01	ci right 2.856704e-01	k: 1120929	n:3930000
PDZD9   3930000 perm   6032 sec   (652 perm/sec)   p_kst 2.852237e-01   p_cons 7.307888e-04   p_joint 2.422392e-04

Joint ci ratio: 1.269659e-01	ci left: 2.265192e-04	ci right 2.574718e-04	k: 952	n:3940000
Cons ci ratio: 7.306897e-02	ci left: 7.032729e-04	ci right 7.568561e-04	k: 2875	n:3940000
KS ci ratio: 3.126366e-03	ci left: 2.847687e-01	ci right 2.856606e-01	k: 1123745	n:3940000
PDZD9   3940000 perm   6060 sec   (650 perm/sec)   p_kst 2.852145e-01   p_cons 7.296954e-04   p_joint 2.416244e-04

Joint ci ratio: 1.266341e-01	ci left: 2.271714e-04	ci right 2.581259e-04	k: 957	n:3950000
Cons ci ratio: 7.291697e-02	ci left: 7.044750e-04	ci right 7.580334e-04	k: 2887	n:3950000
KS ci ratio: 3.122307e-03	ci left: 2.847821e-01	ci right 2.856729e-01	k: 1126648	n:3950000
PDZD9   3950000 perm   6089 sec   (649 perm/sec)   p_kst 2.852273e-01   p_cons 7.308861e-04   p_joint 2.422785e-04

Joint ci ratio: 1.264363e-01	ci left: 2.273313e-04	ci right 2.582556e-04	k: 960	n:3960000
Cons ci ratio: 7.282876e-02	ci left: 7.044315e-04	ci right 7.579191e-04	k: 2894	n:3960000
KS ci ratio: 3.118376e-03	ci left: 2.847808e-01	ci right 2.856705e-01	k: 1129493	n:3960000
PDZD9   3960000 perm   6118 sec   (647 perm/sec)   p_kst 2.852255e-01   p_cons 7.308081e-04   p_joint 2.424242e-04

Joint ci ratio: 1.263705e-01	ci left: 2.270026e-04	ci right 2.578650e-04	k: 961	n:3970000
Cons ci ratio: 7.277853e-02	ci left: 7.036463e-04	ci right 7.570359e-04	k: 2898	n:3970000
KS ci ratio: 3.114478e-03	ci left: 2.847773e-01	ci right 2.856658e-01	k: 1132329	n:3970000
PDZD9   3970000 perm   6146 sec   (646 perm/sec)   p_kst 2.852214e-01   p_cons 7.299748e-04   p_joint 2.420655e-04

Joint ci ratio: 1.261086e-01	ci left: 2.274056e-04	ci right 2.582538e-04	k: 965	n:3980000
Cons ci ratio: 7.266581e-02	ci left: 7.040986e-04	ci right 7.574362e-04	k: 2907	n:3980000
KS ci ratio: 3.110703e-03	ci left: 2.847595e-01	ci right 2.856469e-01	k: 1135108	n:3980000
PDZD9   3980000 perm   6175 sec   (645 perm/sec)   p_kst 2.852030e-01   p_cons 7.304020e-04   p_joint 2.424623e-04

Joint ci ratio: 1.261086e-01	ci left: 2.268356e-04	ci right 2.576066e-04	k: 965	n:3990000
Cons ci ratio: 7.259097e-02	ci left: 7.038103e-04	ci right 7.570689e-04	k: 2913	n:3990000
KS ci ratio: 3.106762e-03	ci left: 2.847653e-01	ci right 2.856516e-01	k: 1137981	n:3990000
PDZD9   3990000 perm   6205 sec   (643 perm/sec)   p_kst 2.852083e-01   p_cons 7.300752e-04   p_joint 2.418546e-04

Joint ci ratio: 1.257835e-01	ci left: 2.274791e-04	ci right 2.582519e-04	k: 970	n:4000000
Cons ci ratio: 7.247911e-02	ci left: 7.042600e-04	ci right 7.574670e-04	k: 2922	n:4000000
KS ci ratio: 3.102717e-03	ci left: 2.847868e-01	ci right 2.856720e-01	k: 1140917	n:4000000
PDZD9   4000000 perm   6234 sec   (642 perm/sec)   p_kst 2.852292e-01   p_cons 7.305000e-04   p_joint 2.425000e-04

Joint ci ratio: 1.257188e-01	ci left: 2.271534e-04	ci right 2.578651e-04	k: 971	n:4010000
Cons ci ratio: 7.245438e-02	ci left: 7.029935e-04	ci right 7.560859e-04	k: 2924	n:4010000
KS ci ratio: 3.098740e-03	ci left: 2.848012e-01	ci right 2.856854e-01	k: 1143825	n:4010000
PDZD9   4010000 perm   6263 sec   (640 perm/sec)   p_kst 2.852431e-01   p_cons 7.291771e-04   p_joint 2.421446e-04

Joint ci ratio: 1.255897e-01	ci left: 2.270702e-04	ci right 2.577368e-04	k: 973	n:4020000
Cons ci ratio: 7.233082e-02	ci left: 7.036873e-04	ci right 7.567376e-04	k: 2934	n:4020000
KS ci ratio: 3.094905e-03	ci left: 2.847989e-01	ci right 2.856820e-01	k: 1146666	n:4020000
PDZD9   4020000 perm   6293 sec   (639 perm/sec)   p_kst 2.852403e-01   p_cons 7.298507e-04   p_joint 2.420398e-04

Joint ci ratio: 1.253326e-01	ci left: 2.274682e-04	ci right 2.581209e-04	k: 977	n:4030000
Cons ci ratio: 7.217111e-02	ci left: 7.051087e-04	ci right 7.581439e-04	k: 2947	n:4030000
KS ci ratio: 3.091054e-03	ci left: 2.848006e-01	ci right 2.856826e-01	k: 1149523	n:4030000
PDZD9   4030000 perm   6323 sec   (637 perm/sec)   p_kst 2.852414e-01   p_cons 7.312655e-04   p_joint 2.424318e-04

Joint ci ratio: 1.249498e-01	ci left: 2.283438e-04	ci right 2.590136e-04	k: 983	n:4040000
Cons ci ratio: 7.203680e-02	ci left: 7.060371e-04	ci right 7.590392e-04	k: 2958	n:4040000
KS ci ratio: 3.087208e-03	ci left: 2.848035e-01	ci right 2.856844e-01	k: 1152385	n:4040000
PDZD9   4040000 perm   6353 sec   (636 perm/sec)   p_kst 2.852438e-01   p_cons 7.321782e-04   p_joint 2.433168e-04

Joint ci ratio: 1.247598e-01	ci left: 2.284976e-04	ci right 2.591380e-04	k: 986	n:4050000
Cons ci ratio: 7.193961e-02	ci left: 7.062335e-04	ci right 7.591759e-04	k: 2966	n:4050000
KS ci ratio: 3.083343e-03	ci left: 2.848109e-01	ci right 2.856906e-01	k: 1155265	n:4050000
PDZD9   4050000 perm   6383 sec   (635 perm/sec)   p_kst 2.852506e-01   p_cons 7.323457e-04   p_joint 2.434568e-04

Joint ci ratio: 1.246966e-01	ci left: 2.281734e-04	ci right 2.587537e-04	k: 987	n:4060000
Cons ci ratio: 7.185490e-02	ci left: 7.061872e-04	ci right 7.590611e-04	k: 2973	n:4060000
KS ci ratio: 3.079630e-03	ci left: 2.848000e-01	ci right 2.856786e-01	k: 1158071	n:4060000
PDZD9   4060000 perm   6413 sec   (633 perm/sec)   p_kst 2.852392e-01   p_cons 7.322660e-04   p_joint 2.431034e-04

Joint ci ratio: 1.245706e-01	ci left: 2.280889e-04	ci right 2.586246e-04	k: 989	n:4070000
Cons ci ratio: 7.177049e-02	ci left: 7.061411e-04	ci right 7.589469e-04	k: 2980	n:4070000
KS ci ratio: 3.075905e-03	ci left: 2.847926e-01	ci right 2.856701e-01	k: 1160891	n:4070000
PDZD9   4070000 perm   6443 sec   (632 perm/sec)   p_kst 2.852312e-01   p_cons 7.321867e-04   p_joint 2.429975e-04

Joint ci ratio: 1.243197e-01	ci left: 2.284797e-04	ci right 2.590016e-04	k: 993	n:4080000
Cons ci ratio: 7.166238e-02	ci left: 7.065767e-04	ci right 7.593321e-04	k: 2989	n:4080000
KS ci ratio: 3.072091e-03	ci left: 2.847987e-01	ci right 2.856752e-01	k: 1163766	n:4080000
PDZD9   4080000 perm   6472 sec   (630 perm/sec)   p_kst 2.852368e-01   p_cons 7.325980e-04   p_joint 2.433824e-04

Joint ci ratio: 1.241325e-01	ci left: 2.286318e-04	ci right 2.591247e-04	k: 996	n:4090000
Cons ci ratio: 7.150705e-02	ci left: 7.079707e-04	ci right 7.607109e-04	k: 3002	n:4090000
KS ci ratio: 3.068444e-03	ci left: 2.847844e-01	ci right 2.856599e-01	k: 1166558	n:4090000
PDZD9   4090000 perm   6503 sec   (629 perm/sec)   p_kst 2.852220e-01   p_cons 7.339853e-04   p_joint 2.435208e-04

Joint ci ratio: 1.238842e-01	ci left: 2.290195e-04	ci right 2.594985e-04	k: 1000	n:4100000
Cons ci ratio: 7.140012e-02	ci left: 7.083999e-04	ci right 7.610899e-04	k: 3011	n:4100000
KS ci ratio: 3.064623e-03	ci left: 2.847952e-01	ci right 2.856695e-01	k: 1169452	n:4100000
PDZD9   4100000 perm   6533 sec   (628 perm/sec)   p_kst 2.852322e-01   p_cons 7.343902e-04   p_joint 2.439024e-04

Joint ci ratio: 1.236374e-01	ci left: 2.294054e-04	ci right 2.598705e-04	k: 1004	n:4110000
Cons ci ratio: 7.130548e-02	ci left: 7.085880e-04	ci right 7.612193e-04	k: 3019	n:4110000
KS ci ratio: 3.060848e-03	ci left: 2.848017e-01	ci right 2.856750e-01	k: 1172329	n:4110000
PDZD9   4110000 perm   6563 sec   (626 perm/sec)   p_kst 2.852382e-01   p_cons 7.345499e-04   p_joint 2.442822e-04

Joint ci ratio: 1.235760e-01	ci left: 2.290838e-04	ci right 2.594899e-04	k: 1005	n:4120000
Cons ci ratio: 7.124655e-02	ci left: 7.080601e-04	ci right 7.606069e-04	k: 3024	n:4120000
KS ci ratio: 3.057071e-03	ci left: 2.848101e-01	ci right 2.856824e-01	k: 1175214	n:4120000
PDZD9   4120000 perm   6593 sec   (625 perm/sec)   p_kst 2.852461e-01   p_cons 7.339806e-04   p_joint 2.439320e-04

Joint ci ratio: 1.233310e-01	ci left: 2.294677e-04	ci right 2.598600e-04	k: 1009	n:4130000
Cons ci ratio: 7.116426e-02	ci left: 7.080104e-04	ci right 7.604903e-04	k: 3031	n:4130000
KS ci ratio: 3.053267e-03	ci left: 2.848241e-01	ci right 2.856953e-01	k: 1178122	n:4130000
PDZD9   4130000 perm   6624 sec   (624 perm/sec)   p_kst 2.852596e-01   p_cons 7.338983e-04   p_joint 2.443099e-04

Joint ci ratio: 1.233310e-01	ci left: 2.289134e-04	ci right 2.592324e-04	k: 1009	n:4140000
Cons ci ratio: 7.110568e-02	ci left: 7.074865e-04	ci right 7.598826e-04	k: 3036	n:4140000
KS ci ratio: 3.049633e-03	ci left: 2.848173e-01	ci right 2.856874e-01	k: 1180944	n:4140000
PDZD9   4140000 perm   6655 sec   (622 perm/sec)   p_kst 2.852522e-01   p_cons 7.333333e-04   p_joint 2.437198e-04

Joint ci ratio: 1.232091e-01	ci left: 2.288289e-04	ci right 2.591045e-04	k: 1011	n:4150000
Cons ci ratio: 7.103555e-02	ci left: 7.072018e-04	ci right 7.595230e-04	k: 3042	n:4150000
KS ci ratio: 3.045970e-03	ci left: 2.848160e-01	ci right 2.856851e-01	k: 1183789	n:4150000
PDZD9   4150000 perm   6686 sec   (621 perm/sec)   p_kst 2.852504e-01   p_cons 7.330120e-04   p_joint 2.436145e-04

Joint ci ratio: 1.229663e-01	ci left: 2.292108e-04	ci right 2.594728e-04	k: 1015	n:4160000
Cons ci ratio: 7.093072e-02	ci left: 7.076268e-04	ci right 7.598991e-04	k: 3051	n:4160000
KS ci ratio: 3.042096e-03	ci left: 2.848447e-01	ci right 2.857128e-01	k: 1186759	n:4160000
PDZD9   4160000 perm   6717 sec   (619 perm/sec)   p_kst 2.852786e-01   p_cons 7.334135e-04   p_joint 2.439904e-04

Joint ci ratio: 1.229059e-01	ci left: 2.288935e-04	ci right 2.590977e-04	k: 1016	n:4170000
Cons ci ratio: 7.088431e-02	ci left: 7.068721e-04	ci right 7.590530e-04	k: 3055	n:4170000
KS ci ratio: 3.038512e-03	ci left: 2.848364e-01	ci right 2.857034e-01	k: 1189575	n:4170000
PDZD9   4170000 perm   6748 sec   (618 perm/sec)   p_kst 2.852698e-01   p_cons 7.326139e-04   p_joint 2.436451e-04

Joint ci ratio: 1.227250e-01	ci left: 2.290416e-04	ci right 2.592176e-04	k: 1019	n:4180000
Cons ci ratio: 7.079171e-02	ci left: 7.070610e-04	ci right 7.591849e-04	k: 3063	n:4180000
KS ci ratio: 3.034964e-03	ci left: 2.848251e-01	ci right 2.856910e-01	k: 1192378	n:4180000
PDZD9   4180000 perm   6780 sec   (617 perm/sec)   p_kst 2.852579e-01   p_cons 7.327751e-04   p_joint 2.437799e-04

Joint ci ratio: 1.227250e-01	ci left: 2.284950e-04	ci right 2.585989e-04	k: 1019	n:4190000
Cons ci ratio: 7.071099e-02	ci left: 7.070146e-04	ci right 7.590732e-04	k: 3070	n:4190000
KS ci ratio: 3.031424e-03	ci left: 2.848142e-01	ci right 2.856792e-01	k: 1195183	n:4190000
PDZD9   4190000 perm   6811 sec   (615 perm/sec)   p_kst 2.852465e-01   p_cons 7.326969e-04   p_joint 2.431981e-04

Joint ci ratio: 1.226649e-01	ci left: 2.281817e-04	ci right 2.582286e-04	k: 1020	n:4200000
Cons ci ratio: 7.067651e-02	ci left: 7.060329e-04	ci right 7.579928e-04	k: 3073	n:4200000
KS ci ratio: 3.027715e-03	ci left: 2.848280e-01	ci right 2.856919e-01	k: 1198091	n:4200000
PDZD9   4200000 perm   6842 sec   (614 perm/sec)   p_kst 2.852598e-01   p_cons 7.316667e-04   p_joint 2.428571e-04

Joint ci ratio: 1.223656e-01	ci left: 2.287910e-04	ci right 2.588393e-04	k: 1025	n:4210000
Cons ci ratio: 7.055036e-02	ci left: 7.069225e-04	ci right 7.588513e-04	k: 3084	n:4210000
KS ci ratio: 3.024219e-03	ci left: 2.848148e-01	ci right 2.856777e-01	k: 1200886	n:4210000
PDZD9   4210000 perm   6873 sec   (613 perm/sec)   p_kst 2.852461e-01   p_cons 7.325416e-04   p_joint 2.434679e-04

Joint ci ratio: 1.223061e-01	ci left: 2.284785e-04	ci right 2.584701e-04	k: 1026	n:4220000
Cons ci ratio: 7.047046e-02	ci left: 7.068769e-04	ci right 7.587410e-04	k: 3091	n:4220000
KS ci ratio: 3.020673e-03	ci left: 2.848100e-01	ci right 2.856718e-01	k: 1203716	n:4220000
PDZD9   4220000 perm   6905 sec   (611 perm/sec)   p_kst 2.852408e-01   p_cons 7.324645e-04   p_joint 2.431280e-04

Joint ci ratio: 1.222466e-01	ci left: 2.281676e-04	ci right 2.581027e-04	k: 1027	n:4230000
Cons ci ratio: 7.042495e-02	ci left: 7.061347e-04	ci right 7.579096e-04	k: 3095	n:4230000
KS ci ratio: 3.017185e-03	ci left: 2.847991e-01	ci right 2.856599e-01	k: 1206520	n:4230000
PDZD9   4230000 perm   6936 sec   (610 perm/sec)   p_kst 2.852293e-01   p_cons 7.316785e-04   p_joint 2.427896e-04

Joint ci ratio: 1.221872e-01	ci left: 2.278581e-04	ci right 2.577371e-04	k: 1028	n:4240000
Cons ci ratio: 7.030014e-02	ci left: 7.070180e-04	ci right 7.587621e-04	k: 3106	n:4240000
KS ci ratio: 3.013709e-03	ci left: 2.847882e-01	ci right 2.856480e-01	k: 1209324	n:4240000
PDZD9   4240000 perm   6968 sec   (608 perm/sec)   p_kst 2.852179e-01   p_cons 7.325472e-04   p_joint 2.424528e-04

Joint ci ratio: 1.221279e-01	ci left: 2.275500e-04	ci right 2.573731e-04	k: 1029	n:4250000
Cons ci ratio: 7.018726e-02	ci left: 7.076661e-04	ci right 7.593710e-04	k: 3116	n:4250000
KS ci ratio: 3.010102e-03	ci left: 2.847966e-01	ci right 2.856554e-01	k: 1212210	n:4250000
PDZD9   4250000 perm   6999 sec   (607 perm/sec)   p_kst 2.852259e-01   p_cons 7.331765e-04   p_joint 2.421176e-04

Joint ci ratio: 1.220686e-01	ci left: 2.272434e-04	ci right 2.570109e-04	k: 1030	n:4260000
Cons ci ratio: 7.009736e-02	ci left: 7.078499e-04	ci right 7.594993e-04	k: 3124	n:4260000
KS ci ratio: 3.006525e-03	ci left: 2.848029e-01	ci right 2.856607e-01	k: 1215087	n:4260000
PDZD9   4260000 perm   7031 sec   (606 perm/sec)   p_kst 2.852317e-01   p_cons 7.333333e-04   p_joint 2.417840e-04

Joint ci ratio: 1.218914e-01	ci left: 2.273924e-04	ci right 2.571330e-04	k: 1033	n:4270000
Cons ci ratio: 7.000780e-02	ci left: 7.080329e-04	ci right 7.596270e-04	k: 3132	n:4270000
KS ci ratio: 3.003003e-03	ci left: 2.848034e-01	ci right 2.856601e-01	k: 1217939	n:4270000
PDZD9   4270000 perm   7062 sec   (605 perm/sec)   p_kst 2.852316e-01   p_cons 7.334895e-04   p_joint 2.419204e-04

Joint ci ratio: 1.217737e-01	ci left: 2.273141e-04	ci right 2.570137e-04	k: 1035	n:4280000
Cons ci ratio: 6.995202e-02	ci left: 7.075264e-04	ci right 7.590408e-04	k: 3137	n:4280000
KS ci ratio: 2.999532e-03	ci left: 2.847984e-01	ci right 2.856542e-01	k: 1220768	n:4280000
PDZD9   4280000 perm   7094 sec   (603 perm/sec)   p_kst 2.852262e-01   p_cons 7.329439e-04   p_joint 2.418224e-04

Joint ci ratio: 1.216564e-01	ci left: 2.272363e-04	ci right 2.568950e-04	k: 1037	n:4290000
Cons ci ratio: 6.986302e-02	ci left: 7.077093e-04	ci right 7.591689e-04	k: 3145	n:4290000
KS ci ratio: 2.995956e-03	ci left: 2.848096e-01	ci right 2.856644e-01	k: 1223666	n:4290000
PDZD9   4290000 perm   7126 sec   (602 perm/sec)   p_kst 2.852368e-01   p_cons 7.331002e-04   p_joint 2.417249e-04

Joint ci ratio: 1.214809e-01	ci left: 2.273843e-04	ci right 2.570164e-04	k: 1040	n:4300000
Cons ci ratio: 6.979651e-02	ci left: 7.074345e-04	ci right 7.588231e-04	k: 3151	n:4300000
KS ci ratio: 2.992408e-03	ci left: 2.848186e-01	ci right 2.856724e-01	k: 1226555	n:4300000
PDZD9   4300000 perm   7158 sec   (601 perm/sec)   p_kst 2.852453e-01   p_cons 7.327907e-04   p_joint 2.418605e-04

Joint ci ratio: 1.213062e-01	ci left: 2.275316e-04	ci right 2.571373e-04	k: 1043	n:4310000
Cons ci ratio: 6.971913e-02	ci left: 7.073889e-04	ci right 7.587149e-04	k: 3158	n:4310000
KS ci ratio: 2.988871e-03	ci left: 2.848278e-01	ci right 2.856806e-01	k: 1229445	n:4310000
PDZD9   4310000 perm   7190 sec   (599 perm/sec)   p_kst 2.852541e-01   p_cons 7.327146e-04   p_joint 2.419954e-04

Joint ci ratio: 1.213063e-01	ci left: 2.270049e-04	ci right 2.565421e-04	k: 1043	n:4320000
Cons ci ratio: 6.967506e-02	ci left: 7.066612e-04	ci right 7.579007e-04	k: 3162	n:4320000
KS ci ratio: 2.985317e-03	ci left: 2.848409e-01	ci right 2.856927e-01	k: 1232352	n:4320000
PDZD9   4320000 perm   7223 sec   (598 perm/sec)   p_kst 2.852667e-01   p_cons 7.319444e-04   p_joint 2.414352e-04

Joint ci ratio: 1.212482e-01	ci left: 2.267046e-04	ci right 2.561876e-04	k: 1044	n:4330000
Cons ci ratio: 6.958711e-02	ci left: 7.068446e-04	ci right 7.580301e-04	k: 3170	n:4330000
KS ci ratio: 2.981899e-03	ci left: 2.848371e-01	ci right 2.856879e-01	k: 1235186	n:4330000
PDZD9   4330000 perm   7255 sec   (597 perm/sec)   p_kst 2.852624e-01   p_cons 7.321016e-04   p_joint 2.411085e-04

Joint ci ratio: 1.211903e-01	ci left: 2.264057e-04	ci right 2.558347e-04	k: 1045	n:4340000
Cons ci ratio: 6.951043e-02	ci left: 7.068008e-04	ci right 7.579244e-04	k: 3177	n:4340000
KS ci ratio: 2.978441e-03	ci left: 2.848404e-01	ci right 2.856903e-01	k: 1238051	n:4340000
PDZD9   4340000 perm   7288 sec   (596 perm/sec)   p_kst 2.852652e-01   p_cons 7.320276e-04   p_joint 2.407834e-04

Joint ci ratio: 1.209592e-01	ci left: 2.267769e-04	ci right 2.561939e-04	k: 1049	n:4350000
Cons ci ratio: 6.944492e-02	ci left: 7.065313e-04	ci right 7.575853e-04	k: 3183	n:4350000
KS ci ratio: 2.975089e-03	ci left: 2.848309e-01	ci right 2.856798e-01	k: 1240860	n:4350000
PDZD9   4350000 perm   7320 sec   (594 perm/sec)   p_kst 2.852552e-01   p_cons 7.317241e-04   p_joint 2.411494e-04

Joint ci ratio: 1.207294e-01	ci left: 2.271465e-04	ci right 2.565515e-04	k: 1053	n:4360000
Cons ci ratio: 6.936871e-02	ci left: 7.064885e-04	ci right 7.574811e-04	k: 3190	n:4360000
KS ci ratio: 2.971729e-03	ci left: 2.848239e-01	ci right 2.856718e-01	k: 1243680	n:4360000
PDZD9   4360000 perm   7352 sec   (593 perm/sec)   p_kst 2.852477e-01   p_cons 7.316514e-04   p_joint 2.415138e-04

Joint ci ratio: 1.207295e-01	ci left: 2.266267e-04	ci right 2.559644e-04	k: 1053	n:4370000
Cons ci ratio: 6.933616e-02	ci left: 7.055464e-04	ci right 7.564462e-04	k: 3193	n:4370000
KS ci ratio: 2.968373e-03	ci left: 2.848181e-01	ci right 2.856650e-01	k: 1246505	n:4370000
PDZD9   4370000 perm   7384 sec   (592 perm/sec)   p_kst 2.852414e-01   p_cons 7.306636e-04   p_joint 2.409611e-04

Joint ci ratio: 1.206151e-01	ci left: 2.265521e-04	ci right 2.558504e-04	k: 1055	n:4380000
Cons ci ratio: 6.924949e-02	ci left: 7.057304e-04	ci right 7.565772e-04	k: 3201	n:4380000
KS ci ratio: 2.964982e-03	ci left: 2.848187e-01	ci right 2.856647e-01	k: 1249358	n:4380000
PDZD9   4380000 perm   7417 sec   (591 perm/sec)   p_kst 2.852416e-01   p_cons 7.308219e-04   p_joint 2.408676e-04

Joint ci ratio: 1.204441e-01	ci left: 2.266988e-04	ci right 2.559715e-04	k: 1058	n:4390000
Cons ci ratio: 6.912005e-02	ci left: 7.068090e-04	ci right 7.576346e-04	k: 3213	n:4390000
KS ci ratio: 2.961709e-03	ci left: 2.848045e-01	ci right 2.856495e-01	k: 1252146	n:4390000
PDZD9   4390000 perm   7449 sec   (589 perm/sec)   p_kst 2.852269e-01   p_cons 7.318907e-04   p_joint 2.410023e-04

Joint ci ratio: 1.202739e-01	ci left: 2.268449e-04	ci right 2.560921e-04	k: 1061	n:4400000
Cons ci ratio: 6.902346e-02	ci left: 7.072127e-04	ci right 7.579935e-04	k: 3222	n:4400000
KS ci ratio: 2.958359e-03	ci left: 2.848027e-01	ci right 2.856467e-01	k: 1254988	n:4400000
PDZD9   4400000 perm   7482 sec   (588 perm/sec)   p_kst 2.852245e-01   p_cons 7.322727e-04   p_joint 2.411364e-04

Joint ci ratio: 1.201608e-01	ci left: 2.267704e-04	ci right 2.559786e-04	k: 1063	n:4410000
Cons ci ratio: 6.899140e-02	ci left: 7.062776e-04	ci right 7.569667e-04	k: 3225	n:4410000
KS ci ratio: 2.954988e-03	ci left: 2.848051e-01	ci right 2.856482e-01	k: 1257849	n:4410000
PDZD9   4410000 perm   7515 sec   (587 perm/sec)   p_kst 2.852265e-01   p_cons 7.312925e-04   p_joint 2.410431e-04

Joint ci ratio: 1.199917e-01	ci left: 2.269157e-04	ci right 2.560985e-04	k: 1066	n:4420000
Cons ci ratio: 6.888469e-02	ci left: 7.069031e-04	ci right 7.575555e-04	k: 3235	n:4420000
KS ci ratio: 2.951693e-03	ci left: 2.847988e-01	ci right 2.856409e-01	k: 1260671	n:4420000
PDZD9   4420000 perm   7547 sec   (586 perm/sec)   p_kst 2.852197e-01   p_cons 7.319005e-04   p_joint 2.411765e-04

Joint ci ratio: 1.198795e-01	ci left: 2.268414e-04	ci right 2.559854e-04	k: 1068	n:4430000
Cons ci ratio: 6.883155e-02	ci left: 7.064167e-04	ci right 7.569936e-04	k: 3240	n:4430000
KS ci ratio: 2.948453e-03	ci left: 2.847863e-01	ci right 2.856275e-01	k: 1263466	n:4430000
PDZD9   4430000 perm   7580 sec   (584 perm/sec)   p_kst 2.852068e-01   p_cons 7.313770e-04   p_joint 2.410835e-04

Joint ci ratio: 1.197116e-01	ci left: 2.269859e-04	ci right 2.561048e-04	k: 1071	n:4440000
Cons ci ratio: 6.875735e-02	ci left: 7.063751e-04	ci right 7.568923e-04	k: 3247	n:4440000
KS ci ratio: 2.945185e-03	ci left: 2.847794e-01	ci right 2.856196e-01	k: 1266285	n:4440000
PDZD9   4440000 perm   7612 sec   (583 perm/sec)   p_kst 2.851993e-01   p_cons 7.313063e-04   p_joint 2.412162e-04

Joint ci ratio: 1.197116e-01	ci left: 2.264758e-04	ci right 2.555293e-04	k: 1071	n:4450000
Cons ci ratio: 6.865172e-02	ci left: 7.069963e-04	ci right 7.574772e-04	k: 3257	n:4450000
KS ci ratio: 2.941921e-03	ci left: 2.847733e-01	ci right 2.856126e-01	k: 1269108	n:4450000
PDZD9   4450000 perm   7645 sec   (582 perm/sec)   p_kst 2.851928e-01   p_cons 7.319101e-04   p_joint 2.406742e-04

Joint ci ratio: 1.195445e-01	ci left: 2.266205e-04	ci right 2.556491e-04	k: 1074	n:4460000
Cons ci ratio: 6.858860e-02	ci left: 7.067333e-04	ci right 7.571472e-04	k: 3263	n:4460000
KS ci ratio: 2.938574e-03	ci left: 2.847803e-01	ci right 2.856186e-01	k: 1271989	n:4460000
PDZD9   4460000 perm   7677 sec   (581 perm/sec)   p_kst 2.851993e-01   p_cons 7.316143e-04   p_joint 2.408072e-04

Joint ci ratio: 1.194889e-01	ci left: 2.263306e-04	ci right 2.553076e-04	k: 1075	n:4470000
Cons ci ratio: 6.851518e-02	ci left: 7.066914e-04	ci right 7.570462e-04	k: 3270	n:4470000
KS ci ratio: 2.935319e-03	ci left: 2.847761e-01	ci right 2.856134e-01	k: 1274820	n:4470000
PDZD9   4470000 perm   7711 sec   (580 perm/sec)   p_kst 2.851946e-01   p_cons 7.315436e-04   p_joint 2.404922e-04

Joint ci ratio: 1.193227e-01	ci left: 2.264750e-04	ci right 2.554274e-04	k: 1078	n:4480000
Cons ci ratio: 6.843154e-02	ci left: 7.068691e-04	ci right 7.571726e-04	k: 3278	n:4480000
KS ci ratio: 2.932046e-03	ci left: 2.847759e-01	ci right 2.856123e-01	k: 1277669	n:4480000
PDZD9   4480000 perm   7744 sec   (579 perm/sec)   p_kst 2.851940e-01   p_cons 7.316964e-04   p_joint 2.406250e-04

Joint ci ratio: 1.193227e-01	ci left: 2.259706e-04	ci right 2.548585e-04	k: 1078	n:4490000
Cons ci ratio: 6.837944e-02	ci left: 7.063893e-04	ci right 7.566189e-04	k: 3283	n:4490000
KS ci ratio: 2.928755e-03	ci left: 2.847797e-01	ci right 2.856152e-01	k: 1280536	n:4490000
PDZD9   4490000 perm   7777 sec   (577 perm/sec)   p_kst 2.851973e-01   p_cons 7.311804e-04   p_joint 2.400891e-04

Joint ci ratio: 1.192675e-01	ci left: 2.256840e-04	ci right 2.545210e-04	k: 1079	n:4500000
Cons ci ratio: 6.829630e-02	ci left: 7.065670e-04	ci right 7.567457e-04	k: 3291	n:4500000
KS ci ratio: 2.925515e-03	ci left: 2.847780e-01	ci right 2.856125e-01	k: 1283378	n:4500000
PDZD9   4500000 perm   7810 sec   (576 perm/sec)   p_kst 2.851951e-01   p_cons 7.313333e-04   p_joint 2.397778e-04

Joint ci ratio: 1.192123e-01	ci left: 2.253988e-04	ci right 2.541850e-04	k: 1080	n:4510000
Cons ci ratio: 6.824451e-02	ci left: 7.060900e-04	ci right 7.561953e-04	k: 3296	n:4510000
KS ci ratio: 2.922322e-03	ci left: 2.847711e-01	ci right 2.856048e-01	k: 1286197	n:4510000
PDZD9   4510000 perm   7843 sec   (575 perm/sec)   p_kst 2.851878e-01   p_cons 7.308204e-04   p_joint 2.394678e-04

Joint ci ratio: 1.189923e-01	ci left: 2.257587e-04	ci right 2.545339e-04	k: 1084	n:4520000
Cons ci ratio: 6.815155e-02	ci left: 7.064851e-04	ci right 7.565474e-04	k: 3305	n:4520000
KS ci ratio: 2.919027e-03	ci left: 2.847800e-01	ci right 2.856127e-01	k: 1289087	n:4520000
PDZD9   4520000 perm   7877 sec   (574 perm/sec)   p_kst 2.851962e-01   p_cons 7.311947e-04   p_joint 2.398230e-04

Joint ci ratio: 1.187736e-01	ci left: 2.261171e-04	ci right 2.548813e-04	k: 1088	n:4530000
Cons ci ratio: 6.806923e-02	ci left: 7.066615e-04	ci right 7.566734e-04	k: 3313	n:4530000
KS ci ratio: 2.915843e-03	ci left: 2.847750e-01	ci right 2.856068e-01	k: 1291914	n:4530000
PDZD9   4530000 perm   7911 sec   (573 perm/sec)   p_kst 2.851907e-01   p_cons 7.313466e-04   p_joint 2.401766e-04

Joint ci ratio: 1.186647e-01	ci left: 2.260465e-04	ci right 2.547735e-04	k: 1090	n:4540000
Cons ci ratio: 6.800771e-02	ci left: 7.064040e-04	ci right 7.563508e-04	k: 3319	n:4540000
KS ci ratio: 2.912471e-03	ci left: 2.847977e-01	ci right 2.856286e-01	k: 1294867	n:4540000
PDZD9   4540000 perm   7944 sec   (571 perm/sec)   p_kst 2.852130e-01   p_cons 7.310573e-04   p_joint 2.400881e-04

Joint ci ratio: 1.183937e-01	ci left: 2.266160e-04	ci right 2.553450e-04	k: 1095	n:4550000
Cons ci ratio: 6.787491e-02	ci left: 7.076601e-04	ci right 7.575942e-04	k: 3332	n:4550000
KS ci ratio: 2.909193e-03	ci left: 2.848087e-01	ci right 2.856386e-01	k: 1297767	n:4550000
PDZD9   4550000 perm   7978 sec   (570 perm/sec)   p_kst 2.852235e-01   p_cons 7.323077e-04   p_joint 2.406593e-04

Joint ci ratio: 1.183937e-01	ci left: 2.261190e-04	ci right 2.547850e-04	k: 1095	n:4560000
Cons ci ratio: 6.784441e-02	ci left: 7.067549e-04	ci right 7.566018e-04	k: 3335	n:4560000
KS ci ratio: 2.905952e-03	ci left: 2.848161e-01	ci right 2.856452e-01	k: 1300651	n:4560000
PDZD9   4560000 perm   8011 sec   (569 perm/sec)   p_kst 2.852305e-01   p_cons 7.313596e-04   p_joint 2.401316e-04

Joint ci ratio: 1.182320e-01	ci left: 2.262612e-04	ci right 2.549034e-04	k: 1098	n:4570000
Cons ci ratio: 6.775307e-02	ci left: 7.071444e-04	ci right 7.569490e-04	k: 3344	n:4570000
KS ci ratio: 2.902863e-03	ci left: 2.848036e-01	ci right 2.856317e-01	k: 1303444	n:4570000
PDZD9   4570000 perm   8044 sec   (568 perm/sec)   p_kst 2.852175e-01   p_cons 7.317287e-04   p_joint 2.402626e-04

Joint ci ratio: 1.180709e-01	ci left: 2.264029e-04	ci right 2.550212e-04	k: 1101	n:4580000
Cons ci ratio: 6.767219e-02	ci left: 7.073176e-04	ci right 7.570726e-04	k: 3352	n:4580000
KS ci ratio: 2.899694e-03	ci left: 2.848038e-01	ci right 2.856310e-01	k: 1306295	n:4580000
PDZD9   4580000 perm   8078 sec   (567 perm/sec)   p_kst 2.852172e-01   p_cons 7.318777e-04   p_joint 2.403930e-04

Joint ci ratio: 1.178572e-01	ci left: 2.267554e-04	ci right 2.553628e-04	k: 1105	n:4590000
Cons ci ratio: 6.753130e-02	ci left: 7.087752e-04	ci right 7.585248e-04	k: 3366	n:4590000
KS ci ratio: 2.896639e-03	ci left: 2.847894e-01	ci right 2.856157e-01	k: 1309079	n:4590000
PDZD9   4590000 perm   8111 sec   (566 perm/sec)   p_kst 2.852024e-01   p_cons 7.333333e-04   p_joint 2.407407e-04

Joint ci ratio: 1.178040e-01	ci left: 2.264734e-04	ci right 2.550314e-04	k: 1106	n:4600000
Cons ci ratio: 6.751129e-02	ci left: 7.076618e-04	ci right 7.573180e-04	k: 3368	n:4600000
KS ci ratio: 2.893445e-03	ci left: 2.847961e-01	ci right 2.856215e-01	k: 1311960	n:4600000
PDZD9   4600000 perm   8145 sec   (565 perm/sec)   p_kst 2.852087e-01   p_cons 7.321739e-04   p_joint 2.404348e-04

Joint ci ratio: 1.174332e-01	ci left: 2.274559e-04	ci right 2.560413e-04	k: 1113	n:4610000
Cons ci ratio: 6.742128e-02	ci left: 7.080461e-04	ci right 7.576604e-04	k: 3377	n:4610000
KS ci ratio: 2.890320e-03	ci left: 2.847944e-01	ci right 2.856189e-01	k: 1314802	n:4610000
PDZD9   4610000 perm   8178 sec   (564 perm/sec)   p_kst 2.852065e-01   p_cons 7.325380e-04   p_joint 2.414317e-04

Joint ci ratio: 1.173279e-01	ci left: 2.273838e-04	ci right 2.559327e-04	k: 1115	n:4620000
Cons ci ratio: 6.737146e-02	ci left: 7.075775e-04	ci right 7.571209e-04	k: 3382	n:4620000
KS ci ratio: 2.887083e-03	ci left: 2.848099e-01	ci right 2.856336e-01	k: 1317724	n:4620000
PDZD9   4620000 perm   8212 sec   (563 perm/sec)   p_kst 2.852216e-01   p_cons 7.320346e-04   p_joint 2.413420e-04

Joint ci ratio: 1.173280e-01	ci left: 2.268927e-04	ci right 2.553799e-04	k: 1115	n:4630000
Cons ci ratio: 6.733169e-02	ci left: 7.068986e-04	ci right 7.563642e-04	k: 3386	n:4630000
KS ci ratio: 2.883969e-03	ci left: 2.848097e-01	ci right 2.856325e-01	k: 1320573	n:4630000
PDZD9   4630000 perm   8246 sec   (562 perm/sec)   p_kst 2.852210e-01   p_cons 7.313175e-04   p_joint 2.408207e-04

Joint ci ratio: 1.172230e-01	ci left: 2.268221e-04	ci right 2.552732e-04	k: 1117	n:4640000
Cons ci ratio: 6.726222e-02	ci left: 7.068584e-04	ci right 7.562681e-04	k: 3393	n:4640000
KS ci ratio: 2.880856e-03	ci left: 2.848105e-01	ci right 2.856324e-01	k: 1323427	n:4640000
PDZD9   4640000 perm   8280 sec   (560 perm/sec)   p_kst 2.852213e-01   p_cons 7.312500e-04   p_joint 2.407328e-04

Joint ci ratio: 1.170660e-01	ci left: 2.269605e-04	ci right 2.553883e-04	k: 1120	n:4650000
Cons ci ratio: 6.715346e-02	ci left: 7.076641e-04	ci right 7.570470e-04	k: 3404	n:4650000
KS ci ratio: 2.877858e-03	ci left: 2.847967e-01	ci right 2.856177e-01	k: 1326213	n:4650000
PDZD9   4650000 perm   8313 sec   (559 perm/sec)   p_kst 2.852071e-01   p_cons 7.320430e-04   p_joint 2.408602e-04

Joint ci ratio: 1.169617e-01	ci left: 2.268901e-04	ci right 2.552820e-04	k: 1122	n:4660000
Cons ci ratio: 6.707471e-02	ci left: 7.078334e-04	ci right 7.571680e-04	k: 3412	n:4660000
KS ci ratio: 2.874932e-03	ci left: 2.847740e-01	ci right 2.855941e-01	k: 1328957	n:4660000
PDZD9   4660000 perm   8346 sec   (558 perm/sec)   p_kst 2.851839e-01   p_cons 7.321888e-04   p_joint 2.407725e-04

Joint ci ratio: 1.169618e-01	ci left: 2.264043e-04	ci right 2.547353e-04	k: 1122	n:4670000
Cons ci ratio: 6.704528e-02	ci left: 7.069494e-04	ci right 7.561998e-04	k: 3415	n:4670000
KS ci ratio: 2.871812e-03	ci left: 2.847800e-01	ci right 2.855992e-01	k: 1331835	n:4670000
PDZD9   4670000 perm   8381 sec   (557 perm/sec)   p_kst 2.851895e-01   p_cons 7.312634e-04   p_joint 2.402570e-04

Joint ci ratio: 1.168578e-01	ci left: 2.263354e-04	ci right 2.546309e-04	k: 1124	n:4680000
Cons ci ratio: 6.696690e-02	ci left: 7.071195e-04	ci right 7.563221e-04	k: 3423	n:4680000
KS ci ratio: 2.868691e-03	ci left: 2.847878e-01	ci right 2.856061e-01	k: 1334721	n:4680000
PDZD9   4680000 perm   8415 sec   (556 perm/sec)   p_kst 2.851968e-01   p_cons 7.314103e-04   p_joint 2.401709e-04

Joint ci ratio: 1.167023e-01	ci left: 2.264737e-04	ci right 2.547463e-04	k: 1127	n:4690000
Cons ci ratio: 6.687905e-02	ci left: 7.074987e-04	ci right 7.566605e-04	k: 3432	n:4690000
KS ci ratio: 2.865736e-03	ci left: 2.847733e-01	ci right 2.855907e-01	k: 1337503	n:4690000
PDZD9   4690000 perm   8450 sec   (555 perm/sec)   p_kst 2.851819e-01   p_cons 7.317697e-04   p_joint 2.402985e-04

Joint ci ratio: 1.167023e-01	ci left: 2.259919e-04	ci right 2.542043e-04	k: 1127	n:4700000
Cons ci ratio: 6.684015e-02	ci left: 7.068302e-04	ci right 7.559159e-04	k: 3436	n:4700000
KS ci ratio: 2.862669e-03	ci left: 2.847761e-01	ci right 2.855927e-01	k: 1340366	n:4700000
PDZD9   4700000 perm   8483 sec   (554 perm/sec)   p_kst 2.851843e-01   p_cons 7.310638e-04   p_joint 2.397872e-04

Joint ci ratio: 1.167023e-01	ci left: 2.255121e-04	ci right 2.536646e-04	k: 1127	n:4710000
Cons ci ratio: 6.679160e-02	ci left: 7.063733e-04	ci right 7.553903e-04	k: 3441	n:4710000
KS ci ratio: 2.859596e-03	ci left: 2.847812e-01	ci right 2.855970e-01	k: 1343240	n:4710000
PDZD9   4710000 perm   8518 sec   (553 perm/sec)   p_kst 2.851890e-01   p_cons 7.305732e-04   p_joint 2.392781e-04

Joint ci ratio: 1.167023e-01	ci left: 2.250343e-04	ci right 2.531272e-04	k: 1127	n:4720000
Cons ci ratio: 6.673347e-02	ci left: 7.061267e-04	ci right 7.550823e-04	k: 3447	n:4720000
KS ci ratio: 2.856532e-03	ci left: 2.847863e-01	ci right 2.856012e-01	k: 1346114	n:4720000
PDZD9   4720000 perm   8552 sec   (552 perm/sec)   p_kst 2.851936e-01   p_cons 7.302966e-04   p_joint 2.387712e-04

Joint ci ratio: 1.165475e-01	ci left: 2.251743e-04	ci right 2.532447e-04	k: 1130	n:4730000
Cons ci ratio: 6.667549e-02	ci left: 7.058812e-04	ci right 7.547756e-04	k: 3453	n:4730000
KS ci ratio: 2.853603e-03	ci left: 2.847737e-01	ci right 2.855877e-01	k: 1348904	n:4730000
PDZD9   4730000 perm   8587 sec   (551 perm/sec)   p_kst 2.851805e-01   p_cons 7.300211e-04   p_joint 2.389006e-04

Joint ci ratio: 1.162395e-01	ci left: 2.259282e-04	ci right 2.540131e-04	k: 1136	n:4740000
Cons ci ratio: 6.656955e-02	ci left: 7.066740e-04	ci right 7.555426e-04	k: 3464	n:4740000
KS ci ratio: 2.850577e-03	ci left: 2.847761e-01	ci right 2.855892e-01	k: 1351765	n:4740000
PDZD9   4740000 perm   8622 sec   (550 perm/sec)   p_kst 2.851825e-01   p_cons 7.308017e-04   p_joint 2.396624e-04

Joint ci ratio: 1.160864e-01	ci left: 2.260658e-04	ci right 2.541283e-04	k: 1139	n:4750000
Cons ci ratio: 6.649283e-02	ci left: 7.068425e-04	ci right 7.556642e-04	k: 3472	n:4750000
KS ci ratio: 2.847378e-03	ci left: 2.848047e-01	ci right 2.856170e-01	k: 1354751	n:4750000
PDZD9   4750000 perm   8657 sec   (549 perm/sec)   p_kst 2.852107e-01   p_cons 7.309474e-04   p_joint 2.397895e-04

Joint ci ratio: 1.159847e-01	ci left: 2.259988e-04	ci right 2.540268e-04	k: 1141	n:4760000
Cons ci ratio: 6.643547e-02	ci left: 7.065971e-04	ci right 7.553581e-04	k: 3478	n:4760000
KS ci ratio: 2.844368e-03	ci left: 2.848076e-01	ci right 2.856191e-01	k: 1357615	n:4760000
PDZD9   4760000 perm   8691 sec   (548 perm/sec)   p_kst 2.852132e-01   p_cons 7.306723e-04   p_joint 2.397059e-04

Joint ci ratio: 1.157821e-01	ci left: 2.263393e-04	ci right 2.543571e-04	k: 1145	n:4770000
Cons ci ratio: 6.635922e-02	ci left: 7.067651e-04	ci right 7.554795e-04	k: 3486	n:4770000
KS ci ratio: 2.841498e-03	ci left: 2.847919e-01	ci right 2.856025e-01	k: 1360390	n:4770000
PDZD9   4770000 perm   8727 sec   (547 perm/sec)   p_kst 2.851971e-01   p_cons 7.308176e-04   p_joint 2.400419e-04

Joint ci ratio: 1.157822e-01	ci left: 2.258658e-04	ci right 2.538250e-04	k: 1145	n:4780000
Cons ci ratio: 6.629271e-02	ci left: 7.067266e-04	ci right 7.553877e-04	k: 3493	n:4780000
KS ci ratio: 2.838461e-03	ci left: 2.848013e-01	ci right 2.856111e-01	k: 1363285	n:4780000
PDZD9   4780000 perm   8761 sec   (546 perm/sec)   p_kst 2.852061e-01   p_cons 7.307531e-04   p_joint 2.395397e-04

Joint ci ratio: 1.156309e-01	ci left: 2.260024e-04	ci right 2.539395e-04	k: 1148	n:4790000
Cons ci ratio: 6.620749e-02	ci left: 7.070990e-04	ci right 7.557207e-04	k: 3502	n:4790000
KS ci ratio: 2.835517e-03	ci left: 2.847988e-01	ci right 2.856077e-01	k: 1366123	n:4790000
PDZD9   4790000 perm   8796 sec   (545 perm/sec)   p_kst 2.852031e-01   p_cons 7.311065e-04   p_joint 2.396660e-04

Joint ci ratio: 1.154802e-01	ci left: 2.261385e-04	ci right 2.540535e-04	k: 1151	n:4800000
Cons ci ratio: 6.611317e-02	ci left: 7.076748e-04	ci right 7.562641e-04	k: 3512	n:4800000
KS ci ratio: 2.832546e-03	ci left: 2.848015e-01	ci right 2.856096e-01	k: 1368986	n:4800000
PDZD9   4800000 perm   8831 sec   (544 perm/sec)   p_kst 2.852054e-01   p_cons 7.316667e-04   p_joint 2.397917e-04

Joint ci ratio: 1.152803e-01	ci left: 2.264760e-04	ci right 2.543809e-04	k: 1155	n:4810000
Cons ci ratio: 6.603801e-02	ci left: 7.078392e-04	ci right 7.563825e-04	k: 3520	n:4810000
KS ci ratio: 2.829635e-03	ci left: 2.847969e-01	ci right 2.856041e-01	k: 1371814	n:4810000
PDZD9   4810000 perm   8867 sec   (542 perm/sec)   p_kst 2.852004e-01   p_cons 7.318087e-04   p_joint 2.401247e-04

Joint ci ratio: 1.151807e-01	ci left: 2.264091e-04	ci right 2.542800e-04	k: 1157	n:4820000
Cons ci ratio: 6.600056e-02	ci left: 7.071868e-04	ci right 7.556568e-04	k: 3524	n:4820000
KS ci ratio: 2.826633e-03	ci left: 2.848067e-01	ci right 2.856131e-01	k: 1374711	n:4820000
PDZD9   4820000 perm   8902 sec   (541 perm/sec)   p_kst 2.852098e-01   p_cons 7.311203e-04   p_joint 2.400415e-04

Joint ci ratio: 1.151310e-01	ci left: 2.261414e-04	ci right 2.539666e-04	k: 1158	n:4830000
Cons ci ratio: 6.597252e-02	ci left: 7.063335e-04	ci right 7.547237e-04	k: 3527	n:4830000
KS ci ratio: 2.823716e-03	ci left: 2.848056e-01	ci right 2.856112e-01	k: 1377556	n:4830000
PDZD9   4830000 perm   8937 sec   (540 perm/sec)   p_kst 2.852083e-01   p_cons 7.302277e-04   p_joint 2.397516e-04

Joint ci ratio: 1.150318e-01	ci left: 2.260755e-04	ci right 2.538670e-04	k: 1160	n:4840000
Cons ci ratio: 6.592583e-02	ci left: 7.058902e-04	ci right 7.542145e-04	k: 3532	n:4840000
KS ci ratio: 2.820766e-03	ci left: 2.848106e-01	ci right 2.856153e-01	k: 1380430	n:4840000
PDZD9   4840000 perm   8974 sec   (539 perm/sec)   p_kst 2.852128e-01   p_cons 7.297521e-04   p_joint 2.396694e-04

Joint ci ratio: 1.150318e-01	ci left: 2.256094e-04	ci right 2.533435e-04	k: 1160	n:4850000
Cons ci ratio: 6.587925e-02	ci left: 7.054487e-04	ci right 7.537073e-04	k: 3537	n:4850000
KS ci ratio: 2.817946e-03	ci left: 2.847980e-01	ci right 2.856019e-01	k: 1383219	n:4850000
PDZD9   4850000 perm   9010 sec   (538 perm/sec)   p_kst 2.851998e-01   p_cons 7.292784e-04   p_joint 2.391753e-04

Joint ci ratio: 1.148341e-01	ci left: 2.259445e-04	ci right 2.536689e-04	k: 1164	n:4860000
Cons ci ratio: 6.579561e-02	ci left: 7.058185e-04	ci right 7.540388e-04	k: 3546	n:4860000
KS ci ratio: 2.815064e-03	ci left: 2.847957e-01	ci right 2.855988e-01	k: 1386058	n:4860000
PDZD9   4860000 perm   9046 sec   (537 perm/sec)   p_kst 2.851971e-01   p_cons 7.296296e-04   p_joint 2.395062e-04

Joint ci ratio: 1.147849e-01	ci left: 2.256800e-04	ci right 2.533593e-04	k: 1165	n:4870000
Cons ci ratio: 6.573078e-02	ci left: 7.057829e-04	ci right 7.539515e-04	k: 3553	n:4870000
KS ci ratio: 2.812106e-03	ci left: 2.848058e-01	ci right 2.856080e-01	k: 1388957	n:4870000
PDZD9   4870000 perm   9083 sec   (536 perm/sec)   p_kst 2.852068e-01   p_cons 7.295688e-04   p_joint 2.392197e-04

Joint ci ratio: 1.145885e-01	ci left: 2.260137e-04	ci right 2.536833e-04	k: 1169	n:4880000
Cons ci ratio: 6.562927e-02	ci left: 7.065537e-04	ci right 7.546976e-04	k: 3564	n:4880000
KS ci ratio: 2.809186e-03	ci left: 2.848115e-01	ci right 2.856129e-01	k: 1391835	n:4880000
PDZD9   4880000 perm   9119 sec   (535 perm/sec)   p_kst 2.852121e-01   p_cons 7.303279e-04   p_joint 2.395492e-04

Joint ci ratio: 1.144907e-01	ci left: 2.259488e-04	ci right 2.535852e-04	k: 1171	n:4890000
Cons ci ratio: 6.558331e-02	ci left: 7.061146e-04	ci right 7.541935e-04	k: 3569	n:4890000
KS ci ratio: 2.806331e-03	ci left: 2.848092e-01	ci right 2.856098e-01	k: 1394674	n:4890000
PDZD9   4890000 perm   9155 sec   (534 perm/sec)   p_kst 2.852094e-01   p_cons 7.298569e-04   p_joint 2.394683e-04

Joint ci ratio: 1.144419e-01	ci left: 2.256859e-04	ci right 2.532776e-04	k: 1172	n:4900000
Cons ci ratio: 6.553745e-02	ci left: 7.056772e-04	ci right 7.536915e-04	k: 3574	n:4900000
KS ci ratio: 2.803465e-03	ci left: 2.848098e-01	ci right 2.856096e-01	k: 1397527	n:4900000
PDZD9   4900000 perm   9191 sec   (533 perm/sec)   p_kst 2.852096e-01   p_cons 7.293878e-04   p_joint 2.391837e-04

Joint ci ratio: 1.142472e-01	ci left: 2.260177e-04	ci right 2.535997e-04	k: 1176	n:4910000
Cons ci ratio: 6.544596e-02	ci left: 7.062433e-04	ci right 7.542264e-04	k: 3584	n:4910000
KS ci ratio: 2.800723e-03	ci left: 2.847935e-01	ci right 2.855925e-01	k: 1400297	n:4910000
PDZD9   4910000 perm   9227 sec   (532 perm/sec)   p_kst 2.851929e-01   p_cons 7.299389e-04   p_joint 2.395112e-04

Joint ci ratio: 1.141988e-01	ci left: 2.257557e-04	ci right 2.532933e-04	k: 1177	n:4920000
Cons ci ratio: 6.538216e-02	ci left: 7.062073e-04	ci right 7.541395e-04	k: 3591	n:4920000
KS ci ratio: 2.797804e-03	ci left: 2.848043e-01	ci right 2.856024e-01	k: 1403200	n:4920000
PDZD9   4920000 perm   9263 sec   (531 perm/sec)   p_kst 2.852033e-01   p_cons 7.298780e-04   p_joint 2.392276e-04

Joint ci ratio: 1.141988e-01	ci left: 2.252978e-04	ci right 2.527796e-04	k: 1177	n:4930000
Cons ci ratio: 6.530039e-02	ci left: 7.065706e-04	ci right 7.544652e-04	k: 3600	n:4930000
KS ci ratio: 2.794978e-03	ci left: 2.848029e-01	ci right 2.856002e-01	k: 1406043	n:4930000
PDZD9   4930000 perm   9300 sec   (530 perm/sec)   p_kst 2.852014e-01   p_cons 7.302231e-04   p_joint 2.387424e-04

Joint ci ratio: 1.140536e-01	ci left: 2.254317e-04	ci right 2.528925e-04	k: 1180	n:4940000
Cons ci ratio: 6.524607e-02	ci left: 7.063350e-04	ci right 7.541723e-04	k: 3606	n:4940000
KS ci ratio: 2.792143e-03	ci left: 2.848039e-01	ci right 2.856004e-01	k: 1408898	n:4940000
PDZD9   4940000 perm   9336 sec   (529 perm/sec)   p_kst 2.852020e-01   p_cons 7.299595e-04   p_joint 2.388664e-04

Joint ci ratio: 1.139090e-01	ci left: 2.255650e-04	ci right 2.530049e-04	k: 1183	n:4950000
Cons ci ratio: 6.514678e-02	ci left: 7.070941e-04	ci right 7.549072e-04	k: 3617	n:4950000
KS ci ratio: 2.789323e-03	ci left: 2.848041e-01	ci right 2.855998e-01	k: 1411749	n:4950000
PDZD9   4950000 perm   9372 sec   (528 perm/sec)   p_kst 2.852018e-01   p_cons 7.307071e-04   p_joint 2.389899e-04

Joint ci ratio: 1.138130e-01	ci left: 2.255020e-04	ci right 2.529095e-04	k: 1185	n:4960000
Cons ci ratio: 6.508385e-02	ci left: 7.070568e-04	ci right 7.548194e-04	k: 3624	n:4960000
KS ci ratio: 2.786580e-03	ci left: 2.847942e-01	ci right 2.855891e-01	k: 1414550	n:4960000
PDZD9   4960000 perm   9409 sec   (527 perm/sec)   p_kst 2.851915e-01   p_cons 7.306452e-04   p_joint 2.389113e-04

Joint ci ratio: 1.135738e-01	ci left: 2.260257e-04	ci right 2.534353e-04	k: 1190	n:4970000
Cons ci ratio: 6.496743e-02	ci left: 7.082074e-04	ci right 7.559589e-04	k: 3637	n:4970000
KS ci ratio: 2.783707e-03	ci left: 2.848047e-01	ci right 2.855988e-01	k: 1417452	n:4970000
PDZD9   4970000 perm   9445 sec   (526 perm/sec)   p_kst 2.852016e-01   p_cons 7.317907e-04   p_joint 2.394366e-04

Joint ci ratio: 1.135262e-01	ci left: 2.257670e-04	ci right 2.531329e-04	k: 1191	n:4980000
Cons ci ratio: 6.494068e-02	ci left: 7.073779e-04	ci right 7.550531e-04	k: 3640	n:4980000
KS ci ratio: 2.780888e-03	ci left: 2.848083e-01	ci right 2.856016e-01	k: 1420320	n:4980000
PDZD9   4980000 perm   9482 sec   (525 perm/sec)   p_kst 2.852048e-01   p_cons 7.309237e-04   p_joint 2.391566e-04

Joint ci ratio: 1.134310e-01	ci left: 2.257039e-04	ci right 2.530378e-04	k: 1193	n:4990000
Cons ci ratio: 6.489616e-02	ci left: 7.069460e-04	ci right 7.545583e-04	k: 3645	n:4990000
KS ci ratio: 2.778148e-03	ci left: 2.848017e-01	ci right 2.855942e-01	k: 1423137	n:4990000
PDZD9   4990000 perm   9519 sec   (524 perm/sec)   p_kst 2.851978e-01   p_cons 7.304609e-04   p_joint 2.390782e-04

Joint ci ratio: 1.133836e-01	ci left: 2.254469e-04	ci right 2.527374e-04	k: 1194	n:5000000
Cons ci ratio: 6.486950e-02	ci left: 7.061224e-04	ci right 7.536589e-04	k: 3648	n:5000000
KS ci ratio: 2.775279e-03	ci left: 2.848153e-01	ci right 2.856070e-01	k: 1426055	n:5000000
PDZD9   5000000 perm   9556 sec   (523 perm/sec)   p_kst 2.852110e-01   p_cons 7.296000e-04   p_joint 2.388000e-04

Outputting figure to mutsig2_images.part000000000128/PDZD9.2_627_5000000_0.28521_0.0007296_0.0002388.png
                gene_name: PDZD9
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.00073 
      ci_cons_bounds_left: 0.00071 
     ci_cons_bounds_right: 0.00075 
                  p_joint: 0.00024 
     ci_joint_bounds_left: 0.00023 
    ci_joint_bounds_right: 0.00025 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000128
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 128 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422300: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000129> was used as the working directory.
Started at Wed Oct 24 18:02:28 2012
Results reported at Wed Oct 24 21:11:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000129.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000129.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 129  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000129.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11168.46 sec.
    Max Memory :      9530 MB
    Max Swap   :     11967 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
129
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 129
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 129: processing genes 11581 - 11671
Calculating significance of each gene.
Using projection method.
11581	PDZK1	6.893649e-01
11582	PDZK1IP1	1
11583	PDZRN3	3.111274e-02
11584	PDZRN4	3.724228e-03
11585	PEA15	1.899903e-01
11586	PEAR1	9.826964e-01
11587	PEBP1	3.986621e-01
11588	PEBP4	1
11589	PECAM1	1
11590	PECI	1
11591	PECR	1
11592	PEF1	1
11593	PEG10	1.445494e-01
11594	PEG3	6.812066e-01
11595	PELI1	7.394217e-01
11596	PELI2	3.111224e-02
11597	PELI3	8.605840e-01
11598	PELO	9.161142e-01
11599	PELP1	9.654790e-01
11600	PEMT	1
11601	PENK	1.119910e-01
11602	PEPD	8.512386e-01
11603	PER1	9.982625e-01
11604	PER2	1
11605	PER3	9.961076e-01
11606	PERP	1
11607	PES1	6.056519e-01
11608	PET112L	7.965902e-01
11609	PEX1	9.662603e-01
11610	PEX10	8.843103e-01
11611	PEX11A	4.296325e-01
11612	PEX11B	5.087426e-01
11613	PEX11G	1
11614	PEX12	3.856762e-01
11615	PEX13	7.119110e-01
11616	PEX14	8.834098e-01
11617	PEX16	9.380473e-01
11618	PEX19	1
11619	PEX2	2.029371e-01
11620	PEX26	1
11621	PEX3	6.616936e-01
11622	PEX5	1
11623	PEX5L	4.319686e-03
11624	PEX6	1
11625	PEX7	5.134566e-01
11626	PF4	1
11627	PF4V1	1
11628	PFAS	9.305078e-01
11629	PFDN1	1
11630	PFDN2	1
11631	PFDN4	1
11632	PFDN5	4.244111e-01
11633	PFDN6	1
11634	PFKFB1	7.835590e-02
11635	PFKFB2	9.716184e-01
11636	PFKFB3	6.769757e-01
11637	PFKFB4	2.134039e-01
11638	PFKL	1
11639	PFKM	8.416334e-01
11640	PFKP	1
11641	PFN1	5.929155e-01
11642	PFN2	1.728800e-01
11643	PFN3	1
11644	PFN4	4.646269e-01
11645	PGA3	4.375933e-01
11646	PGA5	1
11647	PGAM1	6.907411e-01
11648	PGAM2	8.825391e-01
11649	PGAM4	2.857990e-01
11650	PGAM5	6.101523e-01
11651	PGAP1	7.183963e-01
11652	PGAP2	1
11653	PGAP3	1
11654	PGBD1	1
11655	PGBD2	1
11656	PGBD3	1.259209e-01
11657	PGBD4	9.008944e-01
11658	PGBD5	2.000430e-01
11659	PGC	6.614693e-01
11660	PGCP	2.439899e-01
11661	PGD	8.259972e-01
11662	PGF	6.245374e-01
11663	PGGT1B	7.538849e-01
11664	PGK1	8.161962e-02
11665	PGK2	3.055997e-02
11666	PGLS	1
11667	PGLYRP1	6.853293e-01
11668	PGLYRP2	9.616954e-01
11669	PGLYRP3	2.109060e-01
11670	PGLYRP4	5.553387e-01
11671	PGM1	9.254889e-01
Done

Running MutSig 2:
Scatter job 129: processing genes 11581 - 11671
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PEG3
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
PEG3   10000 perm   3 sec   (3981 perm/sec)   p_kst 2.236000e-01   p_cons 5.540000e-01   p_joint 3.584000e-01

Outputting figure to mutsig2_images.part000000000129/PEG3.32_4403_10000_0.2236_0.554_0.3584.png
                gene_name: PEG3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 2 percent done.
PDZRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
PDZRN3   10000 perm   2 sec   (5026 perm/sec)   p_kst 2.000000e-04   p_cons 2.772000e-01   p_joint 1.120000e-02

Joint ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
Cons ci ratio: 4.475906e-02	ci left: 2.709546e-01	ci right 2.834103e-01	k: 5543	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
PDZRN3   20000 perm   4 sec   (4564 perm/sec)   p_kst 1.000000e-04   p_cons 2.771500e-01   p_joint 5.450000e-03

Joint ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
Cons ci ratio: 3.694188e-02	ci left: 2.678317e-01	ci right 2.779456e-01	k: 8186	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
PDZRN3   30000 perm   7 sec   (4395 perm/sec)   p_kst 1.000000e-04   p_cons 2.728667e-01   p_joint 2.300000e-03

Joint ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
Cons ci ratio: 3.203299e-02	ci left: 2.680164e-01	ci right 2.767666e-01	k: 10895	n:40000
KS ci ratio: 1.385773e+00	ci left: 7.036188e-05	ci right 3.605334e-04	k: 7	n:40000
PDZRN3   40000 perm   9 sec   (4237 perm/sec)   p_kst 1.750000e-04   p_cons 2.723750e-01   p_joint 2.125000e-03

Joint ci ratio: 4.017973e-01	ci left: 1.519490e-03	ci right 2.300160e-03	k: 94	n:50000
Cons ci ratio: 2.871349e-02	ci left: 2.676251e-01	ci right 2.754415e-01	k: 13576	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
PDZRN3   50000 perm   12 sec   (4157 perm/sec)   p_kst 1.800000e-04   p_cons 2.715200e-01   p_joint 1.880000e-03

Joint ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
Cons ci ratio: 2.618789e-02	ci left: 2.683260e-01	ci right 2.754628e-01	k: 16313	n:60000
KS ci ratio: 1.131484e+00	ci left: 9.152278e-05	ci right 3.280102e-04	k: 11	n:60000
PDZRN3   60000 perm   15 sec   (4088 perm/sec)   p_kst 1.833333e-04   p_cons 2.718833e-01   p_joint 1.483333e-03

Joint ci ratio: 3.769084e-01	ci left: 1.252865e-03	ci right 1.846828e-03	k: 107	n:70000
Cons ci ratio: 2.347327e-02	ci left: 2.815439e-01	ci right 2.882454e-01	k: 19942	n:70000
KS ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
PDZRN3   70000 perm   17 sec   (4023 perm/sec)   p_kst 1.714286e-04   p_cons 2.848857e-01   p_joint 1.528571e-03

Joint ci ratio: 3.652768e-01	ci left: 1.175589e-03	ci right 1.711615e-03	k: 114	n:80000
Cons ci ratio: 2.196937e-02	ci left: 2.815371e-01	ci right 2.878035e-01	k: 22773	n:80000
KS ci ratio: 9.798959e-01	ci left: 1.049460e-04	ci right 3.092339e-04	k: 15	n:80000
PDZRN3   80000 perm   20 sec   (3946 perm/sec)   p_kst 1.875000e-04   p_cons 2.846625e-01   p_joint 1.425000e-03

Joint ci ratio: 3.591062e-01	ci left: 1.085358e-03	ci right 1.569925e-03	k: 118	n:90000
Cons ci ratio: 2.074334e-02	ci left: 2.811218e-01	ci right 2.870254e-01	k: 25566	n:90000
KS ci ratio: 9.799074e-01	ci left: 9.328497e-05	ci right 2.748764e-04	k: 15	n:90000
PDZRN3   90000 perm   23 sec   (3888 perm/sec)   p_kst 1.666667e-04   p_cons 2.840667e-01   p_joint 1.311111e-03

Joint ci ratio: 3.449124e-01	ci left: 1.067981e-03	ci right 1.521740e-03	k: 128	n:100000
Cons ci ratio: 1.969715e-02	ci left: 2.808973e-01	ci right 2.864952e-01	k: 28369	n:100000
KS ci ratio: 8.992197e-01	ci left: 1.066828e-04	ci right 2.844627e-04	k: 18	n:100000
PDZRN3   100000 perm   26 sec   (3827 perm/sec)   p_kst 1.800000e-04   p_cons 2.836900e-01   p_joint 1.280000e-03

Joint ci ratio: 3.718805e-01	ci left: 8.219479e-04	ci right 1.205147e-03	k: 110	n:110000
Cons ci ratio: 1.878890e-02	ci left: 2.808469e-01	ci right 2.861827e-01	k: 31186	n:110000
KS ci ratio: 8.992279e-01	ci left: 9.698407e-05	ci right 2.586037e-04	k: 18	n:110000
PDZRN3   110000 perm   29 sec   (3773 perm/sec)   p_kst 1.636364e-04   p_cons 2.835091e-01   p_joint 1.000000e-03

Joint ci ratio: 3.669657e-01	ci left: 7.761277e-04	ci right 1.132035e-03	k: 113	n:120000
Cons ci ratio: 1.798612e-02	ci left: 2.810259e-01	ci right 2.861346e-01	k: 34029	n:120000
KS ci ratio: 8.764619e-01	ci left: 9.532962e-05	ci right 2.472461e-04	k: 19	n:120000
PDZRN3   120000 perm   32 sec   (3717 perm/sec)   p_kst 1.583333e-04   p_cons 2.835750e-01   p_joint 9.416667e-04

Joint ci ratio: 3.702442e-01	ci left: 7.024607e-04	ci right 1.028161e-03	k: 111	n:130000
Cons ci ratio: 1.683874e-02	ci left: 2.917390e-01	ci right 2.967009e-01	k: 38248	n:130000
KS ci ratio: 8.356729e-01	ci left: 9.999755e-05	ci right 2.469182e-04	k: 21	n:130000
PDZRN3   130000 perm   35 sec   (3669 perm/sec)   p_kst 1.615385e-04   p_cons 2.942154e-01   p_joint 8.538462e-04

Joint ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
Cons ci ratio: 1.621707e-02	ci left: 2.920631e-01	ci right 2.968454e-01	k: 41223	n:140000
KS ci ratio: 8.356782e-01	ci left: 9.285469e-05	ci right 2.292818e-04	k: 21	n:140000
PDZRN3   140000 perm   39 sec   (3621 perm/sec)   p_kst 1.500000e-04   p_cons 2.944500e-01   p_joint 7.714286e-04

Joint ci ratio: 3.670009e-01	ci left: 6.208924e-04	ci right 9.056454e-04	k: 113	n:150000
Cons ci ratio: 1.586258e-02	ci left: 2.870327e-01	ci right 2.916288e-01	k: 43399	n:150000
KS ci ratio: 8.356827e-01	ci left: 8.666423e-05	ci right 2.139970e-04	k: 21	n:150000
PDZRN3   150000 perm   42 sec   (3574 perm/sec)   p_kst 1.400000e-04   p_cons 2.893267e-01   p_joint 7.533333e-04

Joint ci ratio: 3.686312e-01	ci left: 5.764117e-04	ci right 8.422220e-04	k: 112	n:160000
Cons ci ratio: 1.534240e-02	ci left: 2.875466e-01	ci right 2.919985e-01	k: 46363	n:160000
KS ci ratio: 8.173152e-01	ci left: 8.617246e-05	ci right 2.081693e-04	k: 22	n:160000
PDZRN3   160000 perm   45 sec   (3528 perm/sec)   p_kst 1.375000e-04   p_cons 2.897688e-01   p_joint 7.000000e-04

Joint ci ratio: 3.638376e-01	ci left: 5.585272e-04	ci right 8.119455e-04	k: 115	n:170000
Cons ci ratio: 1.486387e-02	ci left: 2.881782e-01	ci right 2.924995e-01	k: 49357	n:170000
KS ci ratio: 8.001078e-01	ci left: 8.576674e-05	ci right 2.030007e-04	k: 23	n:170000
PDZRN3   170000 perm   49 sec   (3484 perm/sec)   p_kst 1.352941e-04   p_cons 2.903353e-01   p_joint 6.764706e-04

Joint ci ratio: 3.638446e-01	ci left: 5.274962e-04	ci right 7.668403e-04	k: 115	n:180000
Cons ci ratio: 1.444614e-02	ci left: 2.882093e-01	ci right 2.924086e-01	k: 52255	n:180000
KS ci ratio: 8.001111e-01	ci left: 8.100182e-05	ci right 1.917233e-04	k: 23	n:180000
PDZRN3   180000 perm   52 sec   (3442 perm/sec)   p_kst 1.277778e-04   p_cons 2.903056e-01   p_joint 6.388889e-04

Joint ci ratio: 3.547852e-01	ci left: 5.284620e-04	ci right 7.608978e-04	k: 121	n:190000
Cons ci ratio: 1.404274e-02	ci left: 2.887954e-01	ci right 2.928847e-01	k: 55259	n:190000
KS ci ratio: 7.687206e-01	ci left: 8.515271e-05	ci right 1.942304e-04	k: 25	n:190000
PDZRN3   190000 perm   56 sec   (3401 perm/sec)   p_kst 1.315789e-04   p_cons 2.908368e-01   p_joint 6.368421e-04

Joint ci ratio: 3.519164e-01	ci left: 5.111504e-04	ci right 7.337385e-04	k: 123	n:200000
Cons ci ratio: 1.369205e-02	ci left: 2.887005e-01	ci right 2.926856e-01	k: 58138	n:200000
KS ci ratio: 7.687234e-01	ci left: 8.089499e-05	ci right 1.845192e-04	k: 25	n:200000
PDZRN3   200000 perm   60 sec   (3360 perm/sec)   p_kst 1.250000e-04   p_cons 2.906900e-01   p_joint 6.150000e-04

Joint ci ratio: 3.736585e-01	ci left: 4.262109e-04	ci right 6.260924e-04	k: 109	n:210000
Cons ci ratio: 1.335713e-02	ci left: 2.889010e-01	ci right 2.927905e-01	k: 61077	n:210000
KS ci ratio: 7.407592e-01	ci left: 8.473104e-05	ci right 1.870592e-04	k: 27	n:210000
PDZRN3   210000 perm   63 sec   (3319 perm/sec)   p_kst 1.285714e-04   p_cons 2.908429e-01   p_joint 5.190476e-04

Joint ci ratio: 4.177889e-01	ci left: 3.167546e-04	ci right 4.877692e-04	k: 87	n:220000
Cons ci ratio: 1.305283e-02	ci left: 2.888575e-01	ci right 2.926571e-01	k: 63966	n:220000
KS ci ratio: 7.040016e-01	ci left: 9.200580e-05	ci right 1.946619e-04	k: 30	n:220000
PDZRN3   220000 perm   67 sec   (3279 perm/sec)   p_kst 1.363636e-04   p_cons 2.907545e-01   p_joint 3.954545e-04

Joint ci ratio: 4.251042e-01	ci left: 2.913218e-04	ci right 4.521443e-04	k: 84	n:230000
Cons ci ratio: 1.327265e-02	ci left: 2.731411e-01	ci right 2.767950e-01	k: 63242	n:230000
KS ci ratio: 6.722233e-01	ci left: 9.876583e-05	ci right 2.014910e-04	k: 33	n:230000
PDZRN3   230000 perm   71 sec   (3240 perm/sec)   p_kst 1.434783e-04   p_cons 2.749652e-01   p_joint 3.652174e-04

Joint ci ratio: 4.302006e-01	ci left: 2.717466e-04	ci right 4.240809e-04	k: 82	n:240000
Cons ci ratio: 1.300511e-02	ci left: 2.728151e-01	ci right 2.763904e-01	k: 65904	n:240000
KS ci ratio: 6.722254e-01	ci left: 9.465050e-05	ci right 1.930958e-04	k: 33	n:240000
PDZRN3   240000 perm   75 sec   (3205 perm/sec)   p_kst 1.375000e-04   p_cons 2.746000e-01   p_joint 3.416667e-04

Joint ci ratio: 4.276343e-01	ci left: 2.644446e-04	ci right 4.115476e-04	k: 83	n:250000
Cons ci ratio: 1.273955e-02	ci left: 2.729389e-01	ci right 2.764423e-01	k: 68672	n:250000
KS ci ratio: 6.722274e-01	ci left: 9.086441e-05	ci right 1.853721e-04	k: 33	n:250000
PDZRN3   250000 perm   79 sec   (3170 perm/sec)   p_kst 1.320000e-04   p_cons 2.746880e-01   p_joint 3.320000e-04

Joint ci ratio: 4.178019e-01	ci left: 2.680216e-04	ci right 4.127307e-04	k: 87	n:260000
Cons ci ratio: 1.248913e-02	ci left: 2.730693e-01	ci right 2.765049e-01	k: 71444	n:260000
KS ci ratio: 6.625551e-01	ci left: 9.056314e-05	ci right 1.827321e-04	k: 34	n:260000
PDZRN3   260000 perm   83 sec   (3135 perm/sec)   p_kst 1.307692e-04   p_cons 2.747846e-01   p_joint 3.346154e-04

Joint ci ratio: 4.226364e-01	ci left: 2.514704e-04	ci right 3.892589e-04	k: 85	n:270000
Cons ci ratio: 1.225714e-02	ci left: 2.730539e-01	ci right 2.764250e-01	k: 74179	n:270000
KS ci ratio: 6.532886e-01	ci left: 9.029340e-05	ci right 1.802789e-04	k: 35	n:270000
PDZRN3   270000 perm   87 sec   (3098 perm/sec)   p_kst 1.296296e-04   p_cons 2.747370e-01   p_joint 3.148148e-04

Joint ci ratio: 4.154524e-01	ci left: 2.520737e-04	ci right 3.871947e-04	k: 88	n:280000
Cons ci ratio: 1.203880e-02	ci left: 2.730009e-01	ci right 2.763109e-01	k: 76903	n:280000
KS ci ratio: 6.444003e-01	ci left: 9.005142e-05	ci right 1.779927e-04	k: 36	n:280000
PDZRN3   280000 perm   91 sec   (3066 perm/sec)   p_kst 1.285714e-04   p_cons 2.746536e-01   p_joint 3.142857e-04

Joint ci ratio: 4.064192e-01	ci left: 2.557488e-04	ci right 3.890544e-04	k: 92	n:290000
Cons ci ratio: 1.183428e-02	ci left: 2.728660e-01	ci right 2.761178e-01	k: 79602	n:290000
KS ci ratio: 6.276591e-01	ci left: 9.272942e-05	ci right 1.798507e-04	k: 38	n:290000
PDZRN3   290000 perm   96 sec   (3033 perm/sec)   p_kst 1.310345e-04   p_cons 2.744897e-01   p_joint 3.172414e-04

Joint ci ratio: 4.086249e-01	ci left: 2.442319e-04	ci right 3.724132e-04	k: 91	n:300000
Cons ci ratio: 1.162826e-02	ci left: 2.731365e-01	ci right 2.763345e-01	k: 82420	n:300000
KS ci ratio: 6.276605e-01	ci left: 8.963838e-05	ci right 1.738558e-04	k: 38	n:300000
PDZRN3   300000 perm   100 sec   (3002 perm/sec)   p_kst 1.266667e-04   p_cons 2.747333e-01   p_joint 3.033333e-04

Joint ci ratio: 4.042552e-01	ci left: 2.421453e-04	ci right 3.675079e-04	k: 93	n:310000
Cons ci ratio: 1.143615e-02	ci left: 2.732677e-01	ci right 2.764140e-01	k: 85200	n:310000
KS ci ratio: 6.276619e-01	ci left: 8.674677e-05	ci right 1.682477e-04	k: 38	n:310000
PDZRN3   310000 perm   104 sec   (2972 perm/sec)   p_kst 1.225806e-04   p_cons 2.748387e-01   p_joint 3.000000e-04

Joint ci ratio: 3.979547e-01	ci left: 2.430075e-04	ci right 3.663392e-04	k: 96	n:320000
Cons ci ratio: 1.125714e-02	ci left: 2.732538e-01	ci right 2.763503e-01	k: 87936	n:320000
KS ci ratio: 6.121610e-01	ci left: 8.930329e-05	ci right 1.702107e-04	k: 40	n:320000
PDZRN3   320000 perm   109 sec   (2941 perm/sec)   p_kst 1.250000e-04   p_cons 2.748000e-01   p_joint 3.000000e-04

Joint ci ratio: 3.959204e-01	ci left: 2.383713e-04	ci right 3.585695e-04	k: 97	n:330000
Cons ci ratio: 1.108931e-02	ci left: 2.731322e-01	ci right 2.761809e-01	k: 90636	n:330000
KS ci ratio: 5.977545e-01	ci left: 9.172848e-05	ci right 1.720319e-04	k: 42	n:330000
PDZRN3   330000 perm   113 sec   (2911 perm/sec)   p_kst 1.272727e-04   p_cons 2.746545e-01   p_joint 2.939394e-04

Joint ci ratio: 4.328387e-01	ci left: 1.891976e-04	ci right 2.960962e-04	k: 81	n:340000
Cons ci ratio: 1.093637e-02	ci left: 2.727420e-01	ci right 2.757442e-01	k: 93242	n:340000
KS ci ratio: 5.843196e-01	ci left: 9.403231e-05	ci right 1.737254e-04	k: 44	n:340000
PDZRN3   340000 perm   118 sec   (2881 perm/sec)   p_kst 1.294118e-04   p_cons 2.742412e-01   p_joint 2.382353e-04

Joint ci ratio: 4.251315e-01	ci left: 1.914378e-04	ci right 2.971278e-04	k: 84	n:350000
Cons ci ratio: 1.078360e-02	ci left: 2.725942e-01	ci right 2.755524e-01	k: 95925	n:350000
KS ci ratio: 5.657637e-01	ci left: 9.866971e-05	ci right 1.785676e-04	k: 47	n:350000
PDZRN3   350000 perm   123 sec   (2850 perm/sec)   p_kst 1.342857e-04   p_cons 2.740714e-01   p_joint 2.400000e-04

Joint ci ratio: 4.202167e-01	ci left: 1.910846e-04	ci right 2.950176e-04	k: 86	n:360000
Cons ci ratio: 1.063313e-02	ci left: 2.726017e-01	ci right 2.755186e-01	k: 98661	n:360000
KS ci ratio: 5.543324e-01	ci left: 1.006974e-04	ci right 1.799422e-04	k: 49	n:360000
PDZRN3   360000 perm   128 sec   (2823 perm/sec)   p_kst 1.361111e-04   p_cons 2.740583e-01   p_joint 2.388889e-04

Joint ci ratio: 4.251343e-01	ci left: 1.810896e-04	ci right 2.810673e-04	k: 84	n:370000
Cons ci ratio: 1.049035e-02	ci left: 2.725498e-01	ci right 2.754267e-01	k: 101375	n:370000
KS ci ratio: 5.543335e-01	ci left: 9.797580e-05	ci right 1.750790e-04	k: 49	n:370000
PDZRN3   370000 perm   132 sec   (2796 perm/sec)   p_kst 1.324324e-04   p_cons 2.739865e-01   p_joint 2.270270e-04

Joint ci ratio: 4.226561e-01	ci left: 1.786748e-04	ci right 2.765817e-04	k: 85	n:380000
Cons ci ratio: 1.035249e-02	ci left: 2.725272e-01	ci right 2.753658e-01	k: 104099	n:380000
KS ci ratio: 5.488722e-01	ci left: 9.766196e-05	ci right 1.734668e-04	k: 50	n:380000
PDZRN3   380000 perm   137 sec   (2767 perm/sec)   p_kst 1.315789e-04   p_cons 2.739447e-01   p_joint 2.236842e-04

Joint ci ratio: 4.108792e-01	ci left: 1.855697e-04	ci right 2.836471e-04	k: 90	n:390000
Cons ci ratio: 1.021518e-02	ci left: 2.726902e-01	ci right 2.754926e-01	k: 106895	n:390000
KS ci ratio: 5.384161e-01	ci left: 9.958126e-05	ci right 1.748453e-04	k: 52	n:390000
PDZRN3   390000 perm   142 sec   (2739 perm/sec)   p_kst 1.333333e-04   p_cons 2.740897e-01   p_joint 2.307692e-04

Joint ci ratio: 4.086407e-01	ci left: 1.831726e-04	ci right 2.793123e-04	k: 91	n:400000
Cons ci ratio: 1.009067e-02	ci left: 2.725508e-01	ci right 2.753174e-01	k: 109573	n:400000
KS ci ratio: 5.334078e-01	ci left: 9.925312e-05	ci right 1.733097e-04	k: 53	n:400000
PDZRN3   400000 perm   147 sec   (2714 perm/sec)   p_kst 1.325000e-04   p_cons 2.739325e-01   p_joint 2.275000e-04

Joint ci ratio: 2.073778e-01	ci left: 7.804615e-04	ci right 9.632964e-04	k: 356	n:410000
Cons ci ratio: 9.968034e-03	ci left: 2.725207e-01	ci right 2.752532e-01	k: 112293	n:410000
KS ci ratio: 5.237956e-01	ci left: 1.010589e-04	ci right 1.746064e-04	k: 55	n:410000
PDZRN3   410000 perm   153 sec   (2688 perm/sec)   p_kst 1.341463e-04   p_cons 2.738854e-01   p_joint 8.682927e-04

Joint ci ratio: 2.056575e-01	ci left: 7.754258e-04	ci right 9.553845e-04	k: 362	n:420000
Cons ci ratio: 9.852538e-03	ci left: 2.723805e-01	ci right 2.750798e-01	k: 114966	n:420000
KS ci ratio: 5.237965e-01	ci left: 9.865273e-05	ci right 1.704492e-04	k: 55	n:420000
PDZRN3   420000 perm   158 sec   (2662 perm/sec)   p_kst 1.309524e-04   p_cons 2.737286e-01   p_joint 8.619048e-04

Joint ci ratio: 2.062289e-01	ci left: 7.529804e-04	ci right 9.282769e-04	k: 360	n:430000
Cons ci ratio: 9.739539e-03	ci left: 2.723050e-01	ci right 2.749724e-01	k: 117664	n:430000
KS ci ratio: 5.060339e-01	ci left: 1.044517e-04	ci right 1.769865e-04	k: 59	n:430000
PDZRN3   430000 perm   163 sec   (2636 perm/sec)   p_kst 1.372093e-04   p_cons 2.736372e-01   p_joint 8.372093e-04

Joint ci ratio: 2.045367e-01	ci left: 7.488021e-04	ci right 9.215166e-04	k: 366	n:440000
Cons ci ratio: 9.629569e-03	ci left: 2.722650e-01	ci right 2.749017e-01	k: 120376	n:440000
KS ci ratio: 5.060347e-01	ci left: 1.020777e-04	ci right 1.729641e-04	k: 59	n:440000
PDZRN3   440000 perm   168 sec   (2611 perm/sec)   p_kst 1.340909e-04   p_cons 2.735818e-01   p_joint 8.318182e-04

Joint ci ratio: 3.862044e-01	ci left: 1.848232e-04	ci right 2.751512e-04	k: 102	n:450000
Cons ci ratio: 9.521965e-03	ci left: 2.722801e-01	ci right 2.748873e-01	k: 123112	n:450000
KS ci ratio: 5.018700e-01	ci left: 1.017489e-04	ci right 1.716231e-04	k: 60	n:450000
PDZRN3   450000 perm   174 sec   (2587 perm/sec)   p_kst 1.333333e-04   p_cons 2.735822e-01   p_joint 2.266667e-04

Joint ci ratio: 4.042754e-01	ci left: 1.631834e-04	ci right 2.476711e-04	k: 93	n:460000
Cons ci ratio: 9.419640e-03	ci left: 2.722209e-01	ci right 2.747994e-01	k: 125814	n:460000
KS ci ratio: 4.978064e-01	ci left: 1.014366e-04	ci right 1.703382e-04	k: 61	n:460000
PDZRN3   460000 perm   179 sec   (2563 perm/sec)   p_kst 1.326087e-04   p_cons 2.735087e-01   p_joint 2.021739e-04

Joint ci ratio: 2.076807e-01	ci left: 6.788072e-04	ci right 8.380895e-04	k: 355	n:470000
Cons ci ratio: 9.323939e-03	ci left: 2.720199e-01	ci right 2.745701e-01	k: 128448	n:470000
KS ci ratio: 4.753349e-01	ci left: 1.104784e-04	ci right 1.810340e-04	k: 67	n:470000
PDZRN3   470000 perm   185 sec   (2542 perm/sec)   p_kst 1.425532e-04   p_cons 2.732936e-01   p_joint 7.553191e-04

Joint ci ratio: 2.068121e-01	ci left: 6.705908e-04	ci right 8.272036e-04	k: 358	n:480000
Cons ci ratio: 9.230029e-03	ci left: 2.718732e-01	ci right 2.743962e-01	k: 131104	n:480000
KS ci ratio: 4.684950e-01	ci left: 1.118477e-04	ci right 1.819214e-04	k: 69	n:480000
PDZRN3   480000 perm   191 sec   (2519 perm/sec)   p_kst 1.437500e-04   p_cons 2.731333e-01   p_joint 7.458333e-04

Joint ci ratio: 2.045455e-01	ci left: 6.723910e-04	ci right 8.274881e-04	k: 366	n:490000
Cons ci ratio: 9.133874e-03	ci left: 2.719506e-01	ci right 2.744480e-01	k: 133867	n:490000
KS ci ratio: 4.651842e-01	ci left: 1.113658e-04	ci right 1.804880e-04	k: 70	n:490000
PDZRN3   490000 perm   196 sec   (2496 perm/sec)   p_kst 1.428571e-04   p_cons 2.731980e-01   p_joint 7.469388e-04

Joint ci ratio: 2.023518e-01	ci left: 6.741282e-04	ci right 8.277522e-04	k: 374	n:500000
Cons ci ratio: 9.043258e-03	ci left: 2.719113e-01	ci right 2.743834e-01	k: 136573	n:500000
KS ci ratio: 4.496202e-01	ci left: 1.179863e-04	ci right 1.880227e-04	k: 75	n:500000
PDZRN3   500000 perm   202 sec   (2476 perm/sec)   p_kst 1.500000e-04   p_cons 2.731460e-01   p_joint 7.480000e-04

Joint ci ratio: 2.018154e-01	ci left: 6.646328e-04	ci right 8.156420e-04	k: 376	n:510000
Cons ci ratio: 8.953960e-03	ci left: 2.719323e-01	ci right 2.743801e-01	k: 139309	n:510000
KS ci ratio: 4.409999e-01	ci left: 1.208955e-04	ci right 1.908739e-04	k: 78	n:510000
PDZRN3   510000 perm   208 sec   (2455 perm/sec)   p_kst 1.529412e-04   p_cons 2.731549e-01   p_joint 7.372549e-04

Joint ci ratio: 1.999676e-01	ci left: 6.646358e-04	ci right 8.140944e-04	k: 383	n:520000
Cons ci ratio: 8.867600e-03	ci left: 2.719373e-01	ci right 2.743614e-01	k: 142037	n:520000
KS ci ratio: 4.355212e-01	ci left: 1.219923e-04	ci right 1.914713e-04	k: 80	n:520000
PDZRN3   520000 perm   214 sec   (2434 perm/sec)   p_kst 1.538462e-04   p_cons 2.731481e-01   p_joint 7.365385e-04

Joint ci ratio: 1.986788e-01	ci left: 6.610585e-04	ci right 8.086385e-04	k: 388	n:530000
Cons ci ratio: 8.786029e-03	ci left: 2.718367e-01	ci right 2.742375e-01	k: 144709	n:530000
KS ci ratio: 4.328577e-01	ci left: 1.213710e-04	ci right 1.899504e-04	k: 81	n:530000
PDZRN3   530000 perm   220 sec   (2414 perm/sec)   p_kst 1.528302e-04   p_cons 2.730358e-01   p_joint 7.320755e-04

Joint ci ratio: 1.969150e-01	ci left: 6.611377e-04	ci right 8.072678e-04	k: 395	n:540000
Cons ci ratio: 8.705612e-03	ci left: 2.717880e-01	ci right 2.741663e-01	k: 147407	n:540000
KS ci ratio: 4.276734e-01	ci left: 1.224259e-04	ci right 1.905354e-04	k: 83	n:540000
PDZRN3   540000 perm   226 sec   (2393 perm/sec)   p_kst 1.537037e-04   p_cons 2.729759e-01   p_joint 7.314815e-04

Joint ci ratio: 1.956839e-01	ci left: 6.577610e-04	ci right 8.021275e-04	k: 400	n:550000
Cons ci ratio: 8.626730e-03	ci left: 2.717703e-01	ci right 2.741267e-01	k: 150121	n:550000
KS ci ratio: 4.276740e-01	ci left: 1.202000e-04	ci right 1.870711e-04	k: 83	n:550000
PDZRN3   550000 perm   232 sec   (2374 perm/sec)   p_kst 1.509091e-04   p_cons 2.729473e-01   p_joint 7.272727e-04

Joint ci ratio: 3.578067e-01	ci left: 1.760417e-04	ci right 2.542826e-04	k: 119	n:560000
Cons ci ratio: 8.547609e-03	ci left: 2.718620e-01	ci right 2.741975e-01	k: 152896	n:560000
KS ci ratio: 4.226716e-01	ci left: 1.212428e-04	ci right 1.876820e-04	k: 85	n:560000
PDZRN3   560000 perm   238 sec   (2354 perm/sec)   p_kst 1.517857e-04   p_cons 2.730286e-01   p_joint 2.125000e-04

Joint ci ratio: 3.563255e-01	ci left: 1.745502e-04	ci right 2.517327e-04	k: 120	n:570000
Cons ci ratio: 8.472908e-03	ci left: 2.718437e-01	ci right 2.741586e-01	k: 155610	n:570000
KS ci ratio: 4.226722e-01	ci left: 1.191157e-04	ci right 1.843894e-04	k: 85	n:570000
PDZRN3   570000 perm   244 sec   (2336 perm/sec)   p_kst 1.491228e-04   p_cons 2.730000e-01   p_joint 2.105263e-04

Joint ci ratio: 1.949592e-01	ci left: 6.286574e-04	ci right 7.660645e-04	k: 403	n:580000
Cons ci ratio: 8.401410e-03	ci left: 2.717659e-01	ci right 2.740605e-01	k: 158289	n:580000
KS ci ratio: 4.154869e-01	ci left: 1.216889e-04	ci right 1.869251e-04	k: 88	n:580000
PDZRN3   580000 perm   250 sec   (2318 perm/sec)   p_kst 1.517241e-04   p_cons 2.729121e-01   p_joint 6.948276e-04

Joint ci ratio: 1.976718e-01	ci left: 6.002736e-04	ci right 7.335222e-04	k: 392	n:590000
Cons ci ratio: 8.330837e-03	ci left: 2.717315e-01	ci right 2.740064e-01	k: 160992	n:590000
KS ci ratio: 4.108956e-01	ci left: 1.226638e-04	ci right 1.874972e-04	k: 90	n:590000
PDZRN3   590000 perm   257 sec   (2299 perm/sec)   p_kst 1.525424e-04   p_cons 2.728678e-01   p_joint 6.644068e-04

Joint ci ratio: 2.005006e-01	ci left: 5.728487e-04	ci right 7.020520e-04	k: 381	n:600000
Cons ci ratio: 8.261320e-03	ci left: 2.717315e-01	ci right 2.739873e-01	k: 163715	n:600000
KS ci ratio: 4.108962e-01	ci left: 1.206194e-04	ci right 1.843723e-04	k: 90	n:600000
PDZRN3   600000 perm   263 sec   (2280 perm/sec)   p_kst 1.500000e-04   p_cons 2.728583e-01   p_joint 6.350000e-04

Joint ci ratio: 1.999785e-01	ci left: 5.665718e-04	ci right 6.939861e-04	k: 383	n:610000
Cons ci ratio: 8.192769e-03	ci left: 2.717677e-01	ci right 2.740050e-01	k: 166460	n:610000
KS ci ratio: 4.086571e-01	ci left: 1.201123e-04	ci right 1.831573e-04	k: 91	n:610000
PDZRN3   610000 perm   270 sec   (2263 perm/sec)   p_kst 1.491803e-04   p_cons 2.728852e-01   p_joint 6.278689e-04

Joint ci ratio: 1.986894e-01	ci left: 5.650956e-04	ci right 6.912593e-04	k: 388	n:620000
Cons ci ratio: 8.124015e-03	ci left: 2.718946e-01	ci right 2.741140e-01	k: 169262	n:620000
KS ci ratio: 4.064542e-01	ci left: 1.196226e-04	ci right 1.819805e-04	k: 92	n:620000
PDZRN3   620000 perm   276 sec   (2245 perm/sec)   p_kst 1.483871e-04   p_cons 2.730032e-01   p_joint 6.258065e-04

Joint ci ratio: 1.969253e-01	ci left: 5.666867e-04	ci right 6.919476e-04	k: 395	n:630000
Cons ci ratio: 8.059444e-03	ci left: 2.718954e-01	ci right 2.740972e-01	k: 171987	n:630000
KS ci ratio: 4.042866e-01	ci left: 1.191492e-04	ci right 1.808403e-04	k: 93	n:630000
PDZRN3   630000 perm   283 sec   (2228 perm/sec)   p_kst 1.476190e-04   p_cons 2.729952e-01   p_joint 6.269841e-04

Joint ci ratio: 1.966780e-01	ci left: 5.593175e-04	ci right 6.827756e-04	k: 396	n:640000
Cons ci ratio: 7.997930e-03	ci left: 2.718198e-01	ci right 2.740041e-01	k: 174663	n:640000
KS ci ratio: 4.042871e-01	ci left: 1.172875e-04	ci right 1.780147e-04	k: 93	n:640000
PDZRN3   640000 perm   289 sec   (2211 perm/sec)   p_kst 1.453125e-04   p_cons 2.729109e-01   p_joint 6.187500e-04

Joint ci ratio: 1.944854e-01	ci left: 5.638809e-04	ci right 6.867945e-04	k: 405	n:650000
Cons ci ratio: 7.935066e-03	ci left: 2.718834e-01	ci right 2.740509e-01	k: 177428	n:650000
KS ci ratio: 3.979857e-01	ci left: 1.196328e-04	ci right 1.803546e-04	k: 96	n:650000
PDZRN3   650000 perm   296 sec   (2195 perm/sec)   p_kst 1.476923e-04   p_cons 2.729662e-01   p_joint 6.230769e-04

Joint ci ratio: 1.937713e-01	ci left: 5.596617e-04	ci right 6.811548e-04	k: 408	n:660000
Cons ci ratio: 7.876126e-03	ci left: 2.718210e-01	ci right 2.739719e-01	k: 180111	n:660000
KS ci ratio: 3.959501e-01	ci left: 1.191841e-04	ci right 1.792877e-04	k: 97	n:660000
PDZRN3   660000 perm   303 sec   (2178 perm/sec)   p_kst 1.469697e-04   p_cons 2.728955e-01   p_joint 6.181818e-04

Joint ci ratio: 1.921340e-01	ci left: 5.612516e-04	ci right 6.819401e-04	k: 415	n:670000
Cons ci ratio: 7.816127e-03	ci left: 2.718798e-01	ci right 2.740147e-01	k: 182874	n:670000
KS ci ratio: 3.959505e-01	ci left: 1.174052e-04	ci right 1.766118e-04	k: 97	n:670000
PDZRN3   670000 perm   310 sec   (2162 perm/sec)   p_kst 1.447761e-04   p_cons 2.729463e-01   p_joint 6.194030e-04

Joint ci ratio: 1.912172e-01	ci left: 5.585979e-04	ci right 6.780759e-04	k: 419	n:680000
Cons ci ratio: 7.757623e-03	ci left: 2.719296e-01	ci right 2.740488e-01	k: 185632	n:680000
KS ci ratio: 3.900253e-01	ci left: 1.196545e-04	ci right 1.788601e-04	k: 100	n:680000
PDZRN3   680000 perm   317 sec   (2146 perm/sec)   p_kst 1.470588e-04   p_cons 2.729882e-01   p_joint 6.161765e-04

Joint ci ratio: 2.010362e-01	ci left: 4.953744e-04	ci right 6.074387e-04	k: 379	n:690000
Cons ci ratio: 7.701397e-03	ci left: 2.719273e-01	ci right 2.740311e-01	k: 188355	n:690000
KS ci ratio: 3.862200e-01	ci left: 1.205361e-04	ci right 1.794479e-04	k: 102	n:690000
PDZRN3   690000 perm   324 sec   (2131 perm/sec)   p_kst 1.478261e-04   p_cons 2.729783e-01   p_joint 5.492754e-04

Joint ci ratio: 1.997266e-01	ci left: 4.950821e-04	ci right 6.062618e-04	k: 384	n:700000
Cons ci ratio: 7.646514e-03	ci left: 2.719181e-01	ci right 2.740067e-01	k: 191073	n:700000
KS ci ratio: 3.843588e-01	ci left: 1.201043e-04	ci right 1.784507e-04	k: 103	n:700000
PDZRN3   700000 perm   331 sec   (2115 perm/sec)   p_kst 1.471429e-04   p_cons 2.729614e-01   p_joint 5.485714e-04

Joint ci ratio: 2.122288e-01	ci left: 4.293291e-04	ci right 5.325642e-04	k: 340	n:710000
Cons ci ratio: 7.593596e-03	ci left: 2.718669e-01	ci right 2.739406e-01	k: 193761	n:710000
KS ci ratio: 3.825243e-01	ci left: 1.196854e-04	ci right 1.774809e-04	k: 104	n:710000
PDZRN3   710000 perm   338 sec   (2099 perm/sec)   p_kst 1.464789e-04   p_cons 2.729028e-01   p_joint 4.788732e-04

Joint ci ratio: 2.125415e-01	ci left: 4.220510e-04	ci right 5.237050e-04	k: 339	n:720000
Cons ci ratio: 7.541815e-03	ci left: 2.718144e-01	ci right 2.738735e-01	k: 196447	n:720000
KS ci ratio: 3.825247e-01	ci left: 1.180231e-04	ci right 1.750159e-04	k: 104	n:720000
PDZRN3   720000 perm   345 sec   (2084 perm/sec)   p_kst 1.444444e-04   p_cons 2.728431e-01   p_joint 4.708333e-04

Joint ci ratio: 2.113023e-01	ci left: 4.214581e-04	ci right 5.223008e-04	k: 343	n:730000
Cons ci ratio: 7.491983e-03	ci left: 2.717155e-01	ci right 2.737602e-01	k: 199098	n:730000
KS ci ratio: 3.789327e-01	ci left: 1.188838e-04	ci right 1.756192e-04	k: 106	n:730000
PDZRN3   730000 perm   353 sec   (2070 perm/sec)   p_kst 1.452055e-04   p_cons 2.727370e-01   p_joint 4.698630e-04

Joint ci ratio: 2.163977e-01	ci left: 3.952983e-04	ci right 4.924658e-04	k: 327	n:740000
Cons ci ratio: 7.441123e-03	ci left: 2.717260e-01	ci right 2.737568e-01	k: 201828	n:740000
KS ci ratio: 3.771744e-01	ci left: 1.185002e-04	ci right 1.747251e-04	k: 107	n:740000
PDZRN3   740000 perm   360 sec   (2055 perm/sec)   p_kst 1.445946e-04   p_cons 2.727405e-01   p_joint 4.418919e-04

Joint ci ratio: 2.208204e-01	ci left: 3.736428e-04	ci right 4.676194e-04	k: 314	n:750000
Cons ci ratio: 7.392304e-03	ci left: 2.716817e-01	ci right 2.736988e-01	k: 204517	n:750000
KS ci ratio: 3.703773e-01	ci left: 1.217526e-04	ci right 1.782275e-04	k: 111	n:750000
PDZRN3   750000 perm   368 sec   (2040 perm/sec)   p_kst 1.480000e-04   p_cons 2.726893e-01   p_joint 4.186667e-04

Joint ci ratio: 2.229555e-01	ci left: 3.612702e-04	ci right 4.531341e-04	k: 308	n:760000
Cons ci ratio: 7.341486e-03	ci left: 2.717975e-01	ci right 2.738016e-01	k: 207327	n:760000
KS ci ratio: 3.687349e-01	ci left: 1.213442e-04	ci right 1.773198e-04	k: 112	n:760000
PDZRN3   760000 perm   375 sec   (2025 perm/sec)   p_kst 1.473684e-04   p_cons 2.727987e-01   p_joint 4.052632e-04

Joint ci ratio: 2.225961e-01	ci left: 3.578045e-04	ci right 4.486204e-04	k: 309	n:770000
Cons ci ratio: 7.293395e-03	ci left: 2.718183e-01	ci right 2.738093e-01	k: 210066	n:770000
KS ci ratio: 3.639352e-01	ci left: 1.233058e-04	ci right 1.792702e-04	k: 115	n:770000
PDZRN3   770000 perm   383 sec   (2011 perm/sec)   p_kst 1.493506e-04   p_cons 2.728130e-01   p_joint 4.012987e-04

Joint ci ratio: 2.218818e-01	ci left: 3.556386e-04	ci right 4.455755e-04	k: 311	n:780000
Cons ci ratio: 7.249072e-03	ci left: 2.716837e-01	ci right 2.736616e-01	k: 212684	n:780000
KS ci ratio: 3.608377e-01	ci left: 1.240556e-04	ci right 1.797684e-04	k: 117	n:780000
PDZRN3   780000 perm   391 sec   (1997 perm/sec)   p_kst 1.500000e-04   p_cons 2.726718e-01   p_joint 3.987179e-04

Joint ci ratio: 2.211743e-01	ci left: 3.535280e-04	ci right 4.426073e-04	k: 313	n:790000
Cons ci ratio: 7.203407e-03	ci left: 2.716701e-01	ci right 2.736354e-01	k: 215395	n:790000
KS ci ratio: 3.578180e-01	ci left: 1.247884e-04	ci right 1.802521e-04	k: 119	n:790000
PDZRN3   790000 perm   398 sec   (1984 perm/sec)   p_kst 1.506329e-04   p_cons 2.726519e-01   p_joint 3.962025e-04

Joint ci ratio: 2.201254e-01	ci left: 3.526517e-04	ci right 4.410317e-04	k: 316	n:800000
Cons ci ratio: 7.156249e-03	ci left: 2.717867e-01	ci right 2.737399e-01	k: 218210	n:800000
KS ci ratio: 3.534271e-01	ci left: 1.266436e-04	ci right 1.820825e-04	k: 122	n:800000
PDZRN3   800000 perm   406 sec   (1970 perm/sec)   p_kst 1.525000e-04   p_cons 2.727625e-01   p_joint 3.950000e-04

Joint ci ratio: 2.190912e-01	ci left: 3.517979e-04	ci right 4.394940e-04	k: 319	n:810000
Cons ci ratio: 7.111155e-03	ci left: 2.718364e-01	ci right 2.737776e-01	k: 220973	n:810000
KS ci ratio: 3.519992e-01	ci left: 1.262053e-04	ci right 1.811781e-04	k: 123	n:810000
PDZRN3   810000 perm   414 sec   (1957 perm/sec)   p_kst 1.518519e-04   p_cons 2.728062e-01   p_joint 3.938272e-04

Joint ci ratio: 2.180715e-01	ci left: 3.509659e-04	ci right 4.379928e-04	k: 322	n:820000
Cons ci ratio: 7.068076e-03	ci left: 2.718191e-01	ci right 2.737483e-01	k: 223682	n:820000
KS ci ratio: 3.478166e-01	ci left: 1.280032e-04	ci right 1.829474e-04	k: 126	n:820000
PDZRN3   820000 perm   422 sec   (1944 perm/sec)   p_kst 1.536585e-04   p_cons 2.727829e-01   p_joint 3.926829e-04

Joint ci ratio: 2.167337e-01	ci left: 3.512943e-04	ci right 4.377971e-04	k: 326	n:830000
Cons ci ratio: 7.025087e-03	ci left: 2.718408e-01	ci right 2.737584e-01	k: 226423	n:830000
KS ci ratio: 3.451097e-01	ci left: 1.286610e-04	ci right 1.833617e-04	k: 128	n:830000
PDZRN3   830000 perm   430 sec   (1931 perm/sec)   p_kst 1.542169e-04   p_cons 2.727988e-01   p_joint 3.927711e-04

Joint ci ratio: 2.398618e-01	ci left: 2.797566e-04	ci right 3.570909e-04	k: 266	n:840000
Cons ci ratio: 6.984110e-03	ci left: 2.717918e-01	ci right 2.736978e-01	k: 229105	n:840000
KS ci ratio: 3.424651e-01	ci left: 1.293047e-04	ci right 1.837645e-04	k: 130	n:840000
PDZRN3   840000 perm   438 sec   (1918 perm/sec)   p_kst 1.547619e-04   p_cons 2.727440e-01   p_joint 3.166667e-04

Joint ci ratio: 2.385256e-01	ci left: 2.797833e-04	ci right 3.566304e-04	k: 269	n:850000
Cons ci ratio: 6.943223e-03	ci left: 2.717793e-01	ci right 2.736740e-01	k: 231817	n:850000
KS ci ratio: 3.411655e-01	ci left: 1.288590e-04	ci right 1.828797e-04	k: 131	n:850000
PDZRN3   850000 perm   446 sec   (1906 perm/sec)   p_kst 1.541176e-04   p_cons 2.727259e-01   p_joint 3.164706e-04

Joint ci ratio: 2.416805e-01	ci left: 2.688799e-04	ci right 3.438556e-04	k: 262	n:860000
Cons ci ratio: 6.902946e-03	ci left: 2.717729e-01	ci right 2.736565e-01	k: 234534	n:860000
KS ci ratio: 3.373532e-01	ci left: 1.305519e-04	ci right 1.845376e-04	k: 134	n:860000
PDZRN3   860000 perm   454 sec   (1893 perm/sec)   p_kst 1.558140e-04   p_cons 2.727140e-01   p_joint 3.046512e-04

Joint ci ratio: 2.459266e-01	ci left: 2.560762e-04	ci right 3.289280e-04	k: 253	n:870000
Cons ci ratio: 6.861810e-03	ci left: 2.718562e-01	ci right 2.737292e-01	k: 237329	n:870000
KS ci ratio: 3.373535e-01	ci left: 1.290513e-04	ci right 1.824165e-04	k: 134	n:870000
PDZRN3   870000 perm   463 sec   (1881 perm/sec)   p_kst 1.540230e-04   p_cons 2.727920e-01   p_joint 2.908046e-04

Joint ci ratio: 2.449642e-01	ci left: 2.552992e-04	ci right 3.276024e-04	k: 255	n:880000
Cons ci ratio: 6.822651e-03	ci left: 2.718651e-01	ci right 2.737273e-01	k: 240060	n:880000
KS ci ratio: 3.361111e-01	ci left: 1.286250e-04	ci right 1.815757e-04	k: 135	n:880000
PDZRN3   880000 perm   471 sec   (1868 perm/sec)   p_kst 1.534091e-04   p_cons 2.727955e-01   p_joint 2.897727e-04

Joint ci ratio: 2.440130e-01	ci left: 2.545402e-04	ci right 3.263061e-04	k: 257	n:890000
Cons ci ratio: 6.783079e-03	ci left: 2.719366e-01	ci right 2.737885e-01	k: 242847	n:890000
KS ci ratio: 3.348822e-01	ci left: 1.282088e-04	ci right 1.807534e-04	k: 136	n:890000
PDZRN3   890000 perm   479 sec   (1857 perm/sec)   p_kst 1.528090e-04   p_cons 2.728618e-01   p_joint 2.887640e-04

Joint ci ratio: 2.430728e-01	ci left: 2.537985e-04	ci right 3.250381e-04	k: 259	n:900000
Cons ci ratio: 6.744584e-03	ci left: 2.719832e-01	ci right 2.738249e-01	k: 245613	n:900000
KS ci ratio: 3.336668e-01	ci left: 1.278021e-04	ci right 1.799491e-04	k: 137	n:900000
PDZRN3   900000 perm   488 sec   (1844 perm/sec)   p_kst 1.522222e-04   p_cons 2.729033e-01   p_joint 2.877778e-04

Joint ci ratio: 2.416825e-01	ci left: 2.541060e-04	ci right 3.249627e-04	k: 262	n:910000
Cons ci ratio: 6.707759e-03	ci left: 2.719685e-01	ci right 2.738000e-01	k: 248324	n:910000
KS ci ratio: 3.312748e-01	ci left: 1.284120e-04	ci right 1.803522e-04	k: 139	n:910000
PDZRN3   910000 perm   496 sec   (1833 perm/sec)   p_kst 1.527473e-04   p_cons 2.728835e-01   p_joint 2.879121e-04

Joint ci ratio: 2.394171e-01	ci left: 2.564513e-04	ci right 3.271922e-04	k: 267	n:920000
Cons ci ratio: 6.670489e-03	ci left: 2.720160e-01	ci right 2.738376e-01	k: 251092	n:920000
KS ci ratio: 3.277812e-01	ci left: 1.300074e-04	ci right 1.819215e-04	k: 142	n:920000
PDZRN3   920000 perm   505 sec   (1822 perm/sec)   p_kst 1.543478e-04   p_cons 2.729261e-01   p_joint 2.902174e-04

Joint ci ratio: 2.380882e-01	ci left: 2.567266e-04	ci right 3.270924e-04	k: 270	n:930000
Cons ci ratio: 6.634139e-03	ci left: 2.720443e-01	ci right 2.738561e-01	k: 253843	n:930000
KS ci ratio: 3.266412e-01	ci left: 1.295964e-04	ci right 1.811286e-04	k: 143	n:930000
PDZRN3   930000 perm   514 sec   (1811 perm/sec)   p_kst 1.537634e-04   p_cons 2.729495e-01   p_joint 2.903226e-04

Joint ci ratio: 2.498972e-01	ci left: 2.290243e-04	ci right 2.953957e-04	k: 245	n:940000
Cons ci ratio: 6.600499e-03	ci left: 2.719444e-01	ci right 2.737464e-01	k: 256474	n:940000
KS ci ratio: 3.221965e-01	ci left: 1.321266e-04	ci right 1.838023e-04	k: 147	n:940000
PDZRN3   940000 perm   523 sec   (1799 perm/sec)   p_kst 1.563830e-04   p_cons 2.728447e-01   p_joint 2.606383e-04

Joint ci ratio: 2.509199e-01	ci left: 2.246403e-04	ci right 2.900492e-04	k: 243	n:950000
Cons ci ratio: 6.565571e-03	ci left: 2.719550e-01	ci right 2.737474e-01	k: 259208	n:950000
KS ci ratio: 3.221967e-01	ci left: 1.307358e-04	ci right 1.818676e-04	k: 147	n:950000
PDZRN3   950000 perm   532 sec   (1787 perm/sec)   p_kst 1.547368e-04   p_cons 2.728505e-01   p_joint 2.557895e-04

Joint ci ratio: 2.551388e-01	ci left: 2.144952e-04	ci right 2.781675e-04	k: 235	n:960000
Cons ci ratio: 6.530626e-03	ci left: 2.719997e-01	ci right 2.737829e-01	k: 261975	n:960000
KS ci ratio: 3.211138e-01	ci left: 1.303315e-04	ci right 1.810986e-04	k: 148	n:960000
PDZRN3   960000 perm   540 sec   (1776 perm/sec)   p_kst 1.541667e-04   p_cons 2.728906e-01   p_joint 2.447917e-04

Joint ci ratio: 2.530035e-01	ci left: 2.161451e-04	ci right 2.796855e-04	k: 239	n:970000
Cons ci ratio: 6.496588e-03	ci left: 2.720219e-01	ci right 2.737959e-01	k: 264721	n:970000
KS ci ratio: 3.189801e-01	ci left: 1.308841e-04	ci right 1.814586e-04	k: 150	n:970000
PDZRN3   970000 perm   550 sec   (1765 perm/sec)   p_kst 1.546392e-04   p_cons 2.729082e-01   p_joint 2.463918e-04

Joint ci ratio: 2.530038e-01	ci left: 2.139395e-04	ci right 2.768316e-04	k: 239	n:980000
Cons ci ratio: 6.463441e-03	ci left: 2.720213e-01	ci right 2.737862e-01	k: 267445	n:980000
KS ci ratio: 3.189803e-01	ci left: 1.295486e-04	ci right 1.796070e-04	k: 150	n:980000
PDZRN3   980000 perm   559 sec   (1754 perm/sec)   p_kst 1.530612e-04   p_cons 2.729031e-01   p_joint 2.438776e-04

Joint ci ratio: 2.540652e-01	ci left: 2.098866e-04	ci right 2.718871e-04	k: 237	n:990000
Cons ci ratio: 6.430765e-03	ci left: 2.720227e-01	ci right 2.737786e-01	k: 270171	n:990000
KS ci ratio: 3.189806e-01	ci left: 1.282400e-04	ci right 1.777928e-04	k: 150	n:990000
PDZRN3   990000 perm   568 sec   (1744 perm/sec)   p_kst 1.515152e-04   p_cons 2.729000e-01   p_joint 2.393939e-04

Joint ci ratio: 2.535333e-01	ci left: 2.087241e-04	ci right 2.702317e-04	k: 238	n:1000000
Cons ci ratio: 6.399046e-03	ci left: 2.719951e-01	ci right 2.737422e-01	k: 272868	n:1000000
KS ci ratio: 3.179297e-01	ci left: 1.278777e-04	ci right 1.770945e-04	k: 151	n:1000000
PDZRN3   1000000 perm   577 sec   (1733 perm/sec)   p_kst 1.510000e-04   p_cons 2.728680e-01   p_joint 2.380000e-04

Joint ci ratio: 2.535336e-01	ci left: 2.066575e-04	ci right 2.675562e-04	k: 238	n:1010000
Cons ci ratio: 6.366744e-03	ci left: 2.720334e-01	ci right 2.737719e-01	k: 275631	n:1010000
KS ci ratio: 3.168891e-01	ci left: 1.275228e-04	ci right 1.764098e-04	k: 152	n:1010000
PDZRN3   1010000 perm   586 sec   (1723 perm/sec)   p_kst 1.504950e-04   p_cons 2.729020e-01   p_joint 2.356436e-04

Joint ci ratio: 2.530050e-01	ci left: 2.055496e-04	ci right 2.659756e-04	k: 239	n:1020000
Cons ci ratio: 6.336350e-03	ci left: 2.719818e-01	ci right 2.737116e-01	k: 278303	n:1020000
KS ci ratio: 3.168893e-01	ci left: 1.262725e-04	ci right 1.746803e-04	k: 152	n:1020000
PDZRN3   1020000 perm   596 sec   (1712 perm/sec)   p_kst 1.490196e-04   p_cons 2.728461e-01   p_joint 2.343137e-04

Joint ci ratio: 2.519574e-01	ci left: 2.053729e-04	ci right 2.654577e-04	k: 241	n:1030000
Cons ci ratio: 6.306665e-03	ci left: 2.719138e-01	ci right 2.736350e-01	k: 280957	n:1030000
KS ci ratio: 3.148381e-01	ci left: 1.268344e-04	ci right 1.750796e-04	k: 154	n:1030000
PDZRN3   1030000 perm   605 sec   (1701 perm/sec)   p_kst 1.495146e-04   p_cons 2.727738e-01   p_joint 2.339806e-04

Joint ci ratio: 2.509227e-01	ci left: 2.052000e-04	ci right 2.649492e-04	k: 243	n:1040000
Cons ci ratio: 6.276861e-03	ci left: 2.718807e-01	ci right 2.735936e-01	k: 283646	n:1040000
KS ci ratio: 3.128263e-01	ci left: 1.273865e-04	ci right 1.754702e-04	k: 156	n:1040000
PDZRN3   1040000 perm   615 sec   (1692 perm/sec)   p_kst 1.500000e-04   p_cons 2.727365e-01   p_joint 2.336538e-04

Joint ci ratio: 2.524803e-01	ci left: 2.005687e-04	ci right 2.593890e-04	k: 240	n:1050000
Cons ci ratio: 6.247535e-03	ci left: 2.718445e-01	ci right 2.735491e-01	k: 286331	n:1050000
KS ci ratio: 3.128265e-01	ci left: 1.261733e-04	ci right 1.737990e-04	k: 156	n:1050000
PDZRN3   1050000 perm   624 sec   (1682 perm/sec)   p_kst 1.485714e-04   p_cons 2.726962e-01   p_joint 2.285714e-04

Joint ci ratio: 2.524806e-01	ci left: 1.986766e-04	ci right 2.569420e-04	k: 240	n:1060000
Cons ci ratio: 6.217123e-03	ci left: 2.719042e-01	ci right 2.736008e-01	k: 289117	n:1060000
KS ci ratio: 3.128267e-01	ci left: 1.249830e-04	ci right 1.721594e-04	k: 156	n:1060000
PDZRN3   1060000 perm   634 sec   (1673 perm/sec)   p_kst 1.471698e-04   p_cons 2.727519e-01   p_joint 2.264151e-04

Joint ci ratio: 2.519585e-01	ci left: 1.976953e-04	ci right 2.555342e-04	k: 241	n:1070000
Cons ci ratio: 6.188710e-03	ci left: 2.718629e-01	ci right 2.735515e-01	k: 291796	n:1070000
KS ci ratio: 3.118353e-01	ci left: 1.246762e-04	ci right 1.715581e-04	k: 157	n:1070000
PDZRN3   1070000 perm   643 sec   (1663 perm/sec)   p_kst 1.467290e-04   p_cons 2.727065e-01   p_joint 2.252336e-04

Joint ci ratio: 2.519588e-01	ci left: 1.958647e-04	ci right 2.531682e-04	k: 241	n:1080000
Cons ci ratio: 6.159663e-03	ci left: 2.718880e-01	ci right 2.735688e-01	k: 294546	n:1080000
KS ci ratio: 3.118355e-01	ci left: 1.235218e-04	ci right 1.699696e-04	k: 157	n:1080000
PDZRN3   1080000 perm   653 sec   (1654 perm/sec)   p_kst 1.453704e-04   p_cons 2.727278e-01   p_joint 2.231481e-04

Joint ci ratio: 2.514400e-01	ci left: 1.949274e-04	ci right 2.518207e-04	k: 242	n:1090000
Cons ci ratio: 6.130935e-03	ci left: 2.719182e-01	ci right 2.735913e-01	k: 297302	n:1090000
KS ci ratio: 3.108534e-01	ci left: 1.232343e-04	ci right 1.693991e-04	k: 158	n:1090000
PDZRN3   1090000 perm   663 sec   (1644 perm/sec)   p_kst 1.449541e-04   p_cons 2.727541e-01   p_joint 2.220183e-04

Joint ci ratio: 2.499020e-01	ci left: 1.957112e-04	ci right 2.524297e-04	k: 245	n:1100000
Cons ci ratio: 6.102830e-03	ci left: 2.719333e-01	ci right 2.735988e-01	k: 300042	n:1100000
KS ci ratio: 3.098805e-01	ci left: 1.229523e-04	ci right 1.688388e-04	k: 159	n:1100000
PDZRN3   1100000 perm   673 sec   (1634 perm/sec)   p_kst 1.445455e-04   p_cons 2.727655e-01   p_joint 2.227273e-04

Joint ci ratio: 2.493958e-01	ci left: 1.947926e-04	ci right 2.511127e-04	k: 246	n:1110000
Cons ci ratio: 6.073493e-03	ci left: 2.720535e-01	ci right 2.737117e-01	k: 302899	n:1110000
KS ci ratio: 3.089167e-01	ci left: 1.226756e-04	ci right 1.682884e-04	k: 160	n:1110000
PDZRN3   1110000 perm   683 sec   (1625 perm/sec)   p_kst 1.441441e-04   p_cons 2.728820e-01   p_joint 2.216216e-04

Joint ci ratio: 2.483922e-01	ci left: 1.947277e-04	ci right 2.507675e-04	k: 248	n:1120000
Cons ci ratio: 6.046534e-03	ci left: 2.720431e-01	ci right 2.736938e-01	k: 305612	n:1120000
KS ci ratio: 3.079619e-01	ci left: 1.224040e-04	ci right 1.677475e-04	k: 161	n:1120000
PDZRN3   1120000 perm   693 sec   (1616 perm/sec)   p_kst 1.437500e-04   p_cons 2.728679e-01   p_joint 2.214286e-04

Joint ci ratio: 2.478950e-01	ci left: 1.938344e-04	ci right 2.494882e-04	k: 249	n:1130000
Cons ci ratio: 6.019850e-03	ci left: 2.720382e-01	ci right 2.736816e-01	k: 308331	n:1130000
KS ci ratio: 3.079621e-01	ci left: 1.213208e-04	ci right 1.662631e-04	k: 161	n:1130000
PDZRN3   1130000 perm   703 sec   (1607 perm/sec)   p_kst 1.424779e-04   p_cons 2.728593e-01   p_joint 2.203540e-04

Joint ci ratio: 2.474009e-01	ci left: 1.929568e-04	ci right 2.482312e-04	k: 250	n:1140000
Cons ci ratio: 5.992496e-03	ci left: 2.721008e-01	ci right 2.737372e-01	k: 311127	n:1140000
KS ci ratio: 3.079623e-01	ci left: 1.202566e-04	ci right 1.648046e-04	k: 161	n:1140000
PDZRN3   1140000 perm   713 sec   (1598 perm/sec)   p_kst 1.412281e-04   p_cons 2.729184e-01   p_joint 2.192982e-04

Joint ci ratio: 2.454526e-01	ci left: 1.945425e-04	ci right 2.497653e-04	k: 254	n:1150000
Cons ci ratio: 5.966793e-03	ci left: 2.720773e-01	ci right 2.737064e-01	k: 313825	n:1150000
KS ci ratio: 3.060786e-01	ci left: 1.208160e-04	ci right 1.652442e-04	k: 163	n:1150000
PDZRN3   1150000 perm   724 sec   (1589 perm/sec)   p_kst 1.417391e-04   p_cons 2.728913e-01   p_joint 2.208696e-04

Joint ci ratio: 2.454528e-01	ci left: 1.928653e-04	ci right 2.476122e-04	k: 254	n:1160000
Cons ci ratio: 5.940901e-03	ci left: 2.720887e-01	ci right 2.737108e-01	k: 316563	n:1160000
KS ci ratio: 3.060788e-01	ci left: 1.197745e-04	ci right 1.638197e-04	k: 163	n:1160000
PDZRN3   1160000 perm   734 sec   (1581 perm/sec)   p_kst 1.405172e-04   p_cons 2.728991e-01   p_joint 2.189655e-04

Joint ci ratio: 2.469101e-01	ci left: 1.888109e-04	ci right 2.427739e-04	k: 251	n:1170000
Cons ci ratio: 5.915344e-03	ci left: 2.720998e-01	ci right 2.737150e-01	k: 319301	n:1170000
KS ci ratio: 3.060790e-01	ci left: 1.187508e-04	ci right 1.624196e-04	k: 163	n:1170000
PDZRN3   1170000 perm   744 sec   (1572 perm/sec)   p_kst 1.393162e-04   p_cons 2.729068e-01   p_joint 2.145299e-04

Joint ci ratio: 2.454533e-01	ci left: 1.895964e-04	ci right 2.434154e-04	k: 254	n:1180000
Cons ci ratio: 5.889950e-03	ci left: 2.721218e-01	ci right 2.737301e-01	k: 322052	n:1180000
KS ci ratio: 3.060792e-01	ci left: 1.177444e-04	ci right 1.610432e-04	k: 163	n:1180000
PDZRN3   1180000 perm   755 sec   (1563 perm/sec)   p_kst 1.381356e-04   p_cons 2.729254e-01   p_joint 2.152542e-04

Joint ci ratio: 2.449735e-01	ci left: 1.887918e-04	ci right 2.422618e-04	k: 255	n:1190000
Cons ci ratio: 5.863688e-03	ci left: 2.722241e-01	ci right 2.738258e-01	k: 324899	n:1190000
KS ci ratio: 3.060794e-01	ci left: 1.167549e-04	ci right 1.596899e-04	k: 163	n:1190000
PDZRN3   1190000 perm   766 sec   (1554 perm/sec)   p_kst 1.369748e-04   p_cons 2.730244e-01   p_joint 2.142857e-04

Joint ci ratio: 2.546061e-01	ci left: 1.723758e-04	ci right 2.234211e-04	k: 236	n:1200000
Cons ci ratio: 5.838889e-03	ci left: 2.722488e-01	ci right 2.738439e-01	k: 327655	n:1200000
KS ci ratio: 3.051505e-01	ci left: 1.165514e-04	ci right 1.592562e-04	k: 164	n:1200000
PDZRN3   1200000 perm   776 sec   (1546 perm/sec)   p_kst 1.366667e-04   p_cons 2.730458e-01   p_joint 1.966667e-04

Joint ci ratio: 2.578923e-01	ci left: 1.663109e-04	ci right 2.162983e-04	k: 230	n:1210000
Cons ci ratio: 5.814923e-03	ci left: 2.722377e-01	ci right 2.738262e-01	k: 330368	n:1210000
KS ci ratio: 3.042300e-01	ci left: 1.163515e-04	ci right 1.588294e-04	k: 165	n:1210000
PDZRN3   1210000 perm   787 sec   (1538 perm/sec)   p_kst 1.363636e-04   p_cons 2.730314e-01   p_joint 1.900826e-04

Joint ci ratio: 2.562337e-01	ci left: 1.672483e-04	ci right 2.171425e-04	k: 233	n:1220000
Cons ci ratio: 5.791249e-03	ci left: 2.722268e-01	ci right 2.738087e-01	k: 333081	n:1220000
KS ci ratio: 3.024136e-01	ci left: 1.169124e-04	ci right 1.592913e-04	k: 167	n:1220000
PDZRN3   1220000 perm   798 sec   (1529 perm/sec)   p_kst 1.368852e-04   p_cons 2.730172e-01   p_joint 1.909836e-04

Joint ci ratio: 2.556881e-01	ci left: 1.666494e-04	ci right 2.162422e-04	k: 234	n:1230000
Cons ci ratio: 5.767508e-03	ci left: 2.722404e-01	ci right 2.738159e-01	k: 335824	n:1230000
KS ci ratio: 3.015176e-01	ci left: 1.167133e-04	ci right 1.588706e-04	k: 168	n:1230000
PDZRN3   1230000 perm   808 sec   (1521 perm/sec)   p_kst 1.365854e-04   p_cons 2.730276e-01   p_joint 1.902439e-04

Joint ci ratio: 2.551459e-01	ci left: 1.660603e-04	ci right 2.153563e-04	k: 235	n:1240000
Cons ci ratio: 5.744628e-03	ci left: 2.722144e-01	ci right 2.737834e-01	k: 338518	n:1240000
KS ci ratio: 3.015178e-01	ci left: 1.157720e-04	ci right 1.575894e-04	k: 168	n:1240000
PDZRN3   1240000 perm   819 sec   (1514 perm/sec)   p_kst 1.354839e-04   p_cons 2.729984e-01   p_joint 1.895161e-04

Joint ci ratio: 2.546071e-01	ci left: 1.654807e-04	ci right 2.144844e-04	k: 236	n:1250000
Cons ci ratio: 5.721246e-03	ci left: 2.722423e-01	ci right 2.738051e-01	k: 341279	n:1250000
KS ci ratio: 3.006297e-01	ci left: 1.155854e-04	ci right 1.571890e-04	k: 169	n:1250000
PDZRN3   1250000 perm   830 sec   (1506 perm/sec)   p_kst 1.352000e-04   p_cons 2.730232e-01   p_joint 1.888000e-04

Joint ci ratio: 2.535396e-01	ci left: 1.656536e-04	ci right 2.144703e-04	k: 238	n:1260000
Cons ci ratio: 5.698261e-03	ci left: 2.722619e-01	ci right 2.738185e-01	k: 344030	n:1260000
KS ci ratio: 2.997494e-01	ci left: 1.154020e-04	ci right 1.567947e-04	k: 170	n:1260000
PDZRN3   1260000 perm   841 sec   (1498 perm/sec)   p_kst 1.349206e-04   p_cons 2.730397e-01   p_joint 1.888889e-04

Joint ci ratio: 2.519630e-01	ci left: 1.665618e-04	ci right 2.152931e-04	k: 241	n:1270000
Cons ci ratio: 5.674842e-03	ci left: 2.723307e-01	ci right 2.738813e-01	k: 346844	n:1270000
KS ci ratio: 2.980117e-01	ci left: 1.159500e-04	ci right 1.572526e-04	k: 172	n:1270000
PDZRN3   1270000 perm   852 sec   (1491 perm/sec)   p_kst 1.354331e-04   p_cons 2.731055e-01   p_joint 1.897638e-04

Joint ci ratio: 2.509283e-01	ci left: 1.667246e-04	ci right 2.152719e-04	k: 243	n:1280000
Cons ci ratio: 5.652921e-03	ci left: 2.723134e-01	ci right 2.738579e-01	k: 349549	n:1280000
KS ci ratio: 2.980118e-01	ci left: 1.150442e-04	ci right 1.560241e-04	k: 172	n:1280000
PDZRN3   1280000 perm   863 sec   (1484 perm/sec)   p_kst 1.343750e-04   p_cons 2.730852e-01   p_joint 1.898437e-04

Joint ci ratio: 2.499061e-01	ci left: 1.668852e-04	ci right 2.152506e-04	k: 245	n:1290000
Cons ci ratio: 5.631483e-03	ci left: 2.722801e-01	ci right 2.738186e-01	k: 352233	n:1290000
KS ci ratio: 2.963039e-01	ci left: 1.155872e-04	ci right 1.564802e-04	k: 174	n:1290000
PDZRN3   1290000 perm   874 sec   (1476 perm/sec)   p_kst 1.348837e-04   p_cons 2.730488e-01   p_joint 1.899225e-04

Joint ci ratio: 2.488964e-01	ci left: 1.670438e-04	ci right 2.152292e-04	k: 247	n:1300000
Cons ci ratio: 5.610070e-03	ci left: 2.722627e-01	ci right 2.737952e-01	k: 354937	n:1300000
KS ci ratio: 2.946251e-01	ci left: 1.161225e-04	ci right 1.569287e-04	k: 176	n:1300000
PDZRN3   1300000 perm   885 sec   (1469 perm/sec)   p_kst 1.353846e-04   p_cons 2.730285e-01   p_joint 1.900000e-04

Joint ci ratio: 2.474044e-01	ci left: 1.679164e-04	ci right 2.160184e-04	k: 250	n:1310000
Cons ci ratio: 5.588652e-03	ci left: 2.722632e-01	ci right 2.737897e-01	k: 357664	n:1310000
KS ci ratio: 2.937963e-01	ci left: 1.159431e-04	ci right 1.565503e-04	k: 177	n:1310000
PDZRN3   1310000 perm   896 sec   (1461 perm/sec)   p_kst 1.351145e-04   p_cons 2.730260e-01   p_joint 1.908397e-04

Joint ci ratio: 2.454561e-01	ci left: 1.694875e-04	ci right 2.175990e-04	k: 254	n:1320000
Cons ci ratio: 5.567913e-03	ci left: 2.722326e-01	ci right 2.737533e-01	k: 360350	n:1320000
KS ci ratio: 2.913512e-01	ci left: 1.171707e-04	ci right 1.578033e-04	k: 180	n:1320000
PDZRN3   1320000 perm   908 sec   (1454 perm/sec)   p_kst 1.363636e-04   p_cons 2.729924e-01   p_joint 1.924242e-04

Joint ci ratio: 2.444992e-01	ci left: 1.696246e-04	ci right 2.175588e-04	k: 256	n:1330000
Cons ci ratio: 5.546783e-03	ci left: 2.722467e-01	ci right 2.737618e-01	k: 363095	n:1330000
KS ci ratio: 2.889661e-01	ci left: 1.183812e-04	ci right 1.590362e-04	k: 183	n:1330000
PDZRN3   1330000 perm   919 sec   (1447 perm/sec)   p_kst 1.375940e-04   p_cons 2.730038e-01   p_joint 1.924812e-04

Joint ci ratio: 2.435533e-01	ci left: 1.697600e-04	ci right 2.175188e-04	k: 258	n:1340000
Cons ci ratio: 5.525757e-03	ci left: 2.722704e-01	ci right 2.737798e-01	k: 365853	n:1340000
KS ci ratio: 2.881841e-01	ci left: 1.181900e-04	ci right 1.586495e-04	k: 184	n:1340000
PDZRN3   1340000 perm   931 sec   (1440 perm/sec)   p_kst 1.373134e-04   p_cons 2.730246e-01   p_joint 1.925373e-04

Joint ci ratio: 2.416939e-01	ci left: 1.712854e-04	ci right 2.190503e-04	k: 262	n:1350000
Cons ci ratio: 5.505502e-03	ci left: 2.722553e-01	ci right 2.737590e-01	k: 368559	n:1350000
KS ci ratio: 2.858754e-01	ci left: 1.193768e-04	ci right 1.598560e-04	k: 187	n:1350000
PDZRN3   1350000 perm   942 sec   (1433 perm/sec)   p_kst 1.385185e-04   p_cons 2.730067e-01   p_joint 1.940741e-04

Joint ci ratio: 2.416941e-01	ci left: 1.700259e-04	ci right 2.174396e-04	k: 262	n:1360000
Cons ci ratio: 5.484920e-03	ci left: 2.722800e-01	ci right 2.737783e-01	k: 371319	n:1360000
KS ci ratio: 2.851181e-01	ci left: 1.191817e-04	ci right 1.594684e-04	k: 188	n:1360000
PDZRN3   1360000 perm   954 sec   (1426 perm/sec)   p_kst 1.382353e-04   p_cons 2.730287e-01   p_joint 1.926471e-04

Joint ci ratio: 2.407803e-01	ci left: 1.701565e-04	ci right 2.174004e-04	k: 264	n:1370000
Cons ci ratio: 5.465129e-03	ci left: 2.722636e-01	ci right 2.737563e-01	k: 374023	n:1370000
KS ci ratio: 2.843669e-01	ci left: 1.189896e-04	ci right 1.590863e-04	k: 189	n:1370000
PDZRN3   1370000 perm   966 sec   (1419 perm/sec)   p_kst 1.379562e-04   p_cons 2.730095e-01   p_joint 1.927007e-04

Joint ci ratio: 2.394288e-01	ci left: 1.709666e-04	ci right 2.181295e-04	k: 267	n:1380000
Cons ci ratio: 5.445770e-03	ci left: 2.722315e-01	ci right 2.737187e-01	k: 376705	n:1380000
KS ci ratio: 2.821479e-01	ci left: 1.201468e-04	ci right 1.602614e-04	k: 192	n:1380000
PDZRN3   1380000 perm   978 sec   (1412 perm/sec)   p_kst 1.391304e-04   p_cons 2.729746e-01   p_joint 1.934783e-04

Joint ci ratio: 2.394289e-01	ci left: 1.697366e-04	ci right 2.165602e-04	k: 267	n:1390000
Cons ci ratio: 5.426183e-03	ci left: 2.722315e-01	ci right 2.737134e-01	k: 379431	n:1390000
KS ci ratio: 2.799802e-01	ci left: 1.212887e-04	ci right 1.614185e-04	k: 195	n:1390000
PDZRN3   1390000 perm   989 sec   (1405 perm/sec)   p_kst 1.402878e-04   p_cons 2.729719e-01   p_joint 1.920863e-04

Joint ci ratio: 2.385405e-01	ci left: 1.698672e-04	ci right 2.165273e-04	k: 269	n:1400000
Cons ci ratio: 5.407175e-03	ci left: 2.722043e-01	ci right 2.736809e-01	k: 382119	n:1400000
KS ci ratio: 2.799803e-01	ci left: 1.204223e-04	ci right 1.602655e-04	k: 195	n:1400000
PDZRN3   1400000 perm   1001 sec   (1398 perm/sec)   p_kst 1.392857e-04   p_cons 2.729421e-01   p_joint 1.921429e-04

Joint ci ratio: 2.372261e-01	ci left: 1.706634e-04	ci right 2.172459e-04	k: 272	n:1410000
Cons ci ratio: 5.388269e-03	ci left: 2.721847e-01	ci right 2.736559e-01	k: 384817	n:1410000
KS ci ratio: 2.792688e-01	ci left: 1.202277e-04	ci right 1.598877e-04	k: 196	n:1410000
PDZRN3   1410000 perm   1014 sec   (1391 perm/sec)   p_kst 1.390071e-04   p_cons 2.729199e-01   p_joint 1.929078e-04

Joint ci ratio: 2.359333e-01	ci left: 1.714490e-04	ci right 2.179536e-04	k: 275	n:1420000
Cons ci ratio: 5.369179e-03	ci left: 2.721935e-01	ci right 2.736596e-01	k: 387555	n:1420000
KS ci ratio: 2.764758e-01	ci left: 1.220017e-04	ci right 1.617744e-04	k: 200	n:1420000
PDZRN3   1420000 perm   1026 sec   (1384 perm/sec)   p_kst 1.408451e-04   p_cons 2.729261e-01   p_joint 1.936620e-04

Joint ci ratio: 2.367931e-01	ci left: 1.689342e-04	ci right 2.149483e-04	k: 273	n:1430000
Cons ci ratio: 5.350667e-03	ci left: 2.721742e-01	ci right 2.736351e-01	k: 390253	n:1430000
KS ci ratio: 2.744352e-01	ci left: 1.231016e-04	ci right 1.628855e-04	k: 203	n:1430000
PDZRN3   1430000 perm   1038 sec   (1378 perm/sec)   p_kst 1.419580e-04   p_cons 2.729042e-01   p_joint 1.909091e-04

Joint ci ratio: 2.363622e-01	ci left: 1.684144e-04	ci right 2.141911e-04	k: 274	n:1440000
Cons ci ratio: 5.331712e-03	ci left: 2.722024e-01	ci right 2.736582e-01	k: 393019	n:1440000
KS ci ratio: 2.717834e-01	ci left: 1.248343e-04	ci right 1.647218e-04	k: 207	n:1440000
PDZRN3   1440000 perm   1050 sec   (1371 perm/sec)   p_kst 1.437500e-04   p_cons 2.729299e-01   p_joint 1.902778e-04

Joint ci ratio: 2.350834e-01	ci left: 1.691997e-04	ci right 2.149048e-04	k: 277	n:1450000
Cons ci ratio: 5.313639e-03	ci left: 2.721792e-01	ci right 2.736300e-01	k: 395711	n:1450000
KS ci ratio: 2.717835e-01	ci left: 1.239734e-04	ci right 1.635858e-04	k: 207	n:1450000
PDZRN3   1450000 perm   1063 sec   (1365 perm/sec)   p_kst 1.427586e-04   p_cons 2.729041e-01   p_joint 1.910345e-04

Joint ci ratio: 2.346618e-01	ci left: 1.686854e-04	ci right 2.141581e-04	k: 278	n:1460000
Cons ci ratio: 5.295219e-03	ci left: 2.721960e-01	ci right 2.736419e-01	k: 398461	n:1460000
KS ci ratio: 2.711326e-01	ci left: 1.237626e-04	ci right 1.631968e-04	k: 208	n:1460000
PDZRN3   1460000 perm   1075 sec   (1358 perm/sec)   p_kst 1.424658e-04   p_cons 2.729185e-01   p_joint 1.904110e-04

Joint ci ratio: 2.334101e-01	ci left: 1.694590e-04	ci right 2.148614e-04	k: 281	n:1470000
Cons ci ratio: 5.278102e-03	ci left: 2.721290e-01	ci right 2.735698e-01	k: 401088	n:1470000
KS ci ratio: 2.685744e-01	ci left: 1.254577e-04	ci right 1.649913e-04	k: 212	n:1470000
PDZRN3   1470000 perm   1087 sec   (1352 perm/sec)   p_kst 1.442177e-04   p_cons 2.728490e-01   p_joint 1.911565e-04

Joint ci ratio: 2.325868e-01	ci left: 1.695865e-04	ci right 2.148398e-04	k: 283	n:1480000
Cons ci ratio: 5.260522e-03	ci left: 2.721102e-01	ci right 2.735461e-01	k: 403785	n:1480000
KS ci ratio: 2.679462e-01	ci left: 1.252402e-04	ci right 1.645975e-04	k: 213	n:1480000
PDZRN3   1480000 perm   1100 sec   (1346 perm/sec)   p_kst 1.439189e-04   p_cons 2.728277e-01   p_joint 1.912162e-04

Joint ci ratio: 2.321785e-01	ci left: 1.690804e-04	ci right 2.141080e-04	k: 284	n:1490000
Cons ci ratio: 5.242035e-03	ci left: 2.721735e-01	ci right 2.736046e-01	k: 406604	n:1490000
KS ci ratio: 2.667028e-01	ci left: 1.256520e-04	ci right 1.649249e-04	k: 215	n:1490000
PDZRN3   1490000 perm   1112 sec   (1339 perm/sec)   p_kst 1.442953e-04   p_cons 2.728886e-01   p_joint 1.906040e-04

Joint ci ratio: 2.334106e-01	ci left: 1.660698e-04	ci right 2.105643e-04	k: 281	n:1500000
Cons ci ratio: 5.224348e-03	ci left: 2.721899e-01	ci right 2.736163e-01	k: 409354	n:1500000
KS ci ratio: 2.654765e-01	ci left: 1.260588e-04	ci right 1.652474e-04	k: 217	n:1500000
PDZRN3   1500000 perm   1125 sec   (1333 perm/sec)   p_kst 1.446667e-04   p_cons 2.729027e-01   p_joint 1.873333e-04

Joint ci ratio: 2.334107e-01	ci left: 1.649700e-04	ci right 2.091698e-04	k: 281	n:1510000
Cons ci ratio: 5.207089e-03	ci left: 2.721870e-01	ci right 2.736086e-01	k: 412075	n:1510000
KS ci ratio: 2.654766e-01	ci left: 1.252239e-04	ci right 1.641531e-04	k: 217	n:1510000
PDZRN3   1510000 perm   1138 sec   (1327 perm/sec)   p_kst 1.437086e-04   p_cons 2.728974e-01   p_joint 1.860927e-04

Joint ci ratio: 2.325874e-01	ci left: 1.651237e-04	ci right 2.091862e-04	k: 283	n:1520000
Cons ci ratio: 5.190130e-03	ci left: 2.721742e-01	ci right 2.735911e-01	k: 414781	n:1520000
KS ci ratio: 2.636685e-01	ci left: 1.262429e-04	ci right 1.651774e-04	k: 220	n:1520000
PDZRN3   1520000 perm   1151 sec   (1321 perm/sec)   p_kst 1.447368e-04   p_cons 2.728822e-01   p_joint 1.861842e-04

Joint ci ratio: 2.317727e-01	ci left: 1.652756e-04	ci right 2.092020e-04	k: 285	n:1530000
Cons ci ratio: 5.173822e-03	ci left: 2.721244e-01	ci right 2.735366e-01	k: 417430	n:1530000
KS ci ratio: 2.636686e-01	ci left: 1.254178e-04	ci right 1.640978e-04	k: 220	n:1530000
PDZRN3   1530000 perm   1164 sec   (1315 perm/sec)   p_kst 1.437908e-04   p_cons 2.728301e-01   p_joint 1.862745e-04

Joint ci ratio: 2.301686e-01	ci left: 1.666495e-04	ci right 2.105910e-04	k: 289	n:1540000
Cons ci ratio: 5.157530e-03	ci left: 2.720856e-01	ci right 2.734932e-01	k: 420095	n:1540000
KS ci ratio: 2.618969e-01	ci left: 1.264231e-04	ci right 1.651083e-04	k: 223	n:1540000
PDZRN3   1540000 perm   1177 sec   (1309 perm/sec)   p_kst 1.448052e-04   p_cons 2.727890e-01   p_joint 1.876623e-04

Joint ci ratio: 2.297728e-01	ci left: 1.661823e-04	ci right 2.099146e-04	k: 290	n:1550000
Cons ci ratio: 5.140439e-03	ci left: 2.721208e-01	ci right 2.735239e-01	k: 422874	n:1550000
KS ci ratio: 2.613143e-01	ci left: 1.262103e-04	ci right 1.647305e-04	k: 224	n:1550000
PDZRN3   1550000 perm   1190 sec   (1303 perm/sec)   p_kst 1.445161e-04   p_cons 2.728219e-01   p_joint 1.870968e-04

Joint ci ratio: 2.297730e-01	ci left: 1.651171e-04	ci right 2.085690e-04	k: 290	n:1560000
Cons ci ratio: 5.123649e-03	ci left: 2.721454e-01	ci right 2.735439e-01	k: 425637	n:1560000
KS ci ratio: 2.595893e-01	ci left: 1.271988e-04	ci right 1.657229e-04	k: 227	n:1560000
PDZRN3   1560000 perm   1203 sec   (1296 perm/sec)   p_kst 1.455128e-04   p_cons 2.728442e-01   p_joint 1.858974e-04

Joint ci ratio: 2.297731e-01	ci left: 1.640654e-04	ci right 2.072405e-04	k: 290	n:1570000
Cons ci ratio: 5.106990e-03	ci left: 2.721721e-01	ci right 2.735663e-01	k: 428404	n:1570000
KS ci ratio: 2.595894e-01	ci left: 1.263886e-04	ci right 1.646673e-04	k: 227	n:1570000
PDZRN3   1570000 perm   1217 sec   (1290 perm/sec)   p_kst 1.445860e-04   p_cons 2.728688e-01   p_joint 1.847134e-04

Joint ci ratio: 2.289875e-01	ci left: 1.642201e-04	ci right 2.072673e-04	k: 292	n:1580000
Cons ci ratio: 5.091182e-03	ci left: 2.721448e-01	ci right 2.735345e-01	k: 431086	n:1580000
KS ci ratio: 2.584582e-01	ci left: 1.267724e-04	ci right 1.649729e-04	k: 229	n:1580000
PDZRN3   1580000 perm   1230 sec   (1284 perm/sec)   p_kst 1.449367e-04   p_cons 2.728392e-01   p_joint 1.848101e-04

Joint ci ratio: 2.282100e-01	ci left: 1.643731e-04	ci right 2.072935e-04	k: 294	n:1590000
Cons ci ratio: 5.075278e-03	ci left: 2.721367e-01	ci right 2.735220e-01	k: 433798	n:1590000
KS ci ratio: 2.578982e-01	ci left: 1.265633e-04	ci right 1.646049e-04	k: 230	n:1590000
PDZRN3   1590000 perm   1243 sec   (1279 perm/sec)   p_kst 1.446541e-04   p_cons 2.728289e-01   p_joint 1.849057e-04

Joint ci ratio: 2.274403e-01	ci left: 1.645244e-04	ci right 2.073192e-04	k: 296	n:1600000
Cons ci ratio: 5.059451e-03	ci left: 2.721343e-01	ci right 2.735153e-01	k: 436519	n:1600000
KS ci ratio: 2.573419e-01	ci left: 1.263569e-04	ci right 1.642414e-04	k: 231	n:1600000
PDZRN3   1600000 perm   1257 sec   (1273 perm/sec)   p_kst 1.443750e-04   p_cons 2.728244e-01   p_joint 1.850000e-04

Joint ci ratio: 2.278244e-01	ci left: 1.629168e-04	ci right 2.053750e-04	k: 295	n:1610000
Cons ci ratio: 5.043795e-03	ci left: 2.721301e-01	ci right 2.735067e-01	k: 439237	n:1610000
KS ci ratio: 2.556939e-01	ci left: 1.273156e-04	ci right 1.652042e-04	k: 234	n:1610000
PDZRN3   1610000 perm   1270 sec   (1267 perm/sec)   p_kst 1.453416e-04   p_cons 2.728180e-01   p_joint 1.832298e-04

Joint ci ratio: 2.274405e-01	ci left: 1.624932e-04	ci right 2.047597e-04	k: 296	n:1620000
Cons ci ratio: 5.028104e-03	ci left: 2.721401e-01	ci right 2.735125e-01	k: 441978	n:1620000
KS ci ratio: 2.546127e-01	ci left: 1.276854e-04	ci right 1.654977e-04	k: 236	n:1620000
PDZRN3   1620000 perm   1284 sec   (1262 perm/sec)   p_kst 1.456790e-04   p_cons 2.728259e-01   p_joint 1.827160e-04

Joint ci ratio: 2.270587e-01	ci left: 1.620749e-04	ci right 2.041519e-04	k: 297	n:1630000
Cons ci ratio: 5.012294e-03	ci left: 2.721709e-01	ci right 2.735391e-01	k: 444753	n:1630000
KS ci ratio: 2.535451e-01	ci left: 1.280509e-04	ci right 1.657874e-04	k: 238	n:1630000
PDZRN3   1630000 perm   1297 sec   (1257 perm/sec)   p_kst 1.460123e-04   p_cons 2.728546e-01   p_joint 1.822086e-04

Joint ci ratio: 2.266787e-01	ci left: 1.616617e-04	ci right 2.035514e-04	k: 298	n:1640000
Cons ci ratio: 4.996840e-03	ci left: 2.721848e-01	ci right 2.735489e-01	k: 447501	n:1640000
KS ci ratio: 2.524908e-01	ci left: 1.284123e-04	ci right 1.660731e-04	k: 240	n:1640000
PDZRN3   1640000 perm   1311 sec   (1251 perm/sec)   p_kst 1.463415e-04   p_cons 2.728665e-01   p_joint 1.817073e-04

Joint ci ratio: 2.259244e-01	ci left: 1.618254e-04	ci right 2.035985e-04	k: 300	n:1650000
Cons ci ratio: 4.981391e-03	ci left: 2.722095e-01	ci right 2.735695e-01	k: 450267	n:1650000
KS ci ratio: 2.519686e-01	ci left: 1.282018e-04	ci right 1.657109e-04	k: 241	n:1650000
PDZRN3   1650000 perm   1324 sec   (1246 perm/sec)   p_kst 1.460606e-04   p_cons 2.728891e-01   p_joint 1.818182e-04

Joint ci ratio: 2.259245e-01	ci left: 1.608505e-04	ci right 2.023720e-04	k: 300	n:1660000
Cons ci ratio: 4.965866e-03	ci left: 2.722514e-01	ci right 2.736073e-01	k: 453062	n:1660000
KS ci ratio: 2.519687e-01	ci left: 1.274295e-04	ci right 1.647127e-04	k: 241	n:1660000
PDZRN3   1660000 perm   1338 sec   (1241 perm/sec)   p_kst 1.451807e-04   p_cons 2.729289e-01   p_joint 1.807229e-04

Joint ci ratio: 2.248069e-01	ci left: 1.615823e-04	ci right 2.030578e-04	k: 303	n:1670000
Cons ci ratio: 4.950448e-03	ci left: 2.722957e-01	ci right 2.736476e-01	k: 455862	n:1670000
KS ci ratio: 2.514497e-01	ci left: 1.272275e-04	ci right 1.643629e-04	k: 242	n:1670000
PDZRN3   1670000 perm   1352 sec   (1236 perm/sec)   p_kst 1.449102e-04   p_cons 2.729713e-01   p_joint 1.814371e-04

Joint ci ratio: 2.240710e-01	ci left: 1.617441e-04	ci right 2.031064e-04	k: 305	n:1680000
Cons ci ratio: 4.935335e-03	ci left: 2.723264e-01	ci right 2.736744e-01	k: 458640	n:1680000
KS ci ratio: 2.504213e-01	ci left: 1.275858e-04	ci right 1.646497e-04	k: 244	n:1680000
PDZRN3   1680000 perm   1366 sec   (1230 perm/sec)   p_kst 1.452381e-04   p_cons 2.730000e-01   p_joint 1.815476e-04

Joint ci ratio: 2.237058e-01	ci left: 1.613456e-04	ci right 2.025295e-04	k: 306	n:1690000
Cons ci ratio: 4.920462e-03	ci left: 2.723485e-01	ci right 2.736925e-01	k: 461404	n:1690000
KS ci ratio: 2.504214e-01	ci left: 1.268308e-04	ci right 1.636755e-04	k: 244	n:1690000
PDZRN3   1690000 perm   1379 sec   (1225 perm/sec)   p_kst 1.443787e-04   p_cons 2.730201e-01   p_joint 1.810651e-04

Joint ci ratio: 2.233424e-01	ci left: 1.609518e-04	ci right 2.019592e-04	k: 307	n:1700000
Cons ci ratio: 4.906094e-03	ci left: 2.723404e-01	ci right 2.736804e-01	k: 464117	n:1700000
KS ci ratio: 2.504215e-01	ci left: 1.260847e-04	ci right 1.627127e-04	k: 244	n:1700000
PDZRN3   1700000 perm   1394 sec   (1220 perm/sec)   p_kst 1.435294e-04   p_cons 2.730100e-01   p_joint 1.805882e-04

Joint ci ratio: 2.226208e-01	ci left: 1.611148e-04	ci right 2.020130e-04	k: 309	n:1710000
Cons ci ratio: 4.891534e-03	ci left: 2.723581e-01	ci right 2.736942e-01	k: 466874	n:1710000
KS ci ratio: 2.494055e-01	ci left: 1.264438e-04	ci right 1.630038e-04	k: 246	n:1710000
PDZRN3   1710000 perm   1408 sec   (1215 perm/sec)   p_kst 1.438596e-04   p_cons 2.730257e-01   p_joint 1.807018e-04

Joint ci ratio: 2.222626e-01	ci left: 1.607271e-04	ci right 2.014522e-04	k: 310	n:1720000
Cons ci ratio: 4.877581e-03	ci left: 2.723366e-01	ci right 2.736688e-01	k: 469564	n:1720000
KS ci ratio: 2.484019e-01	ci left: 1.267989e-04	ci right 1.632913e-04	k: 248	n:1720000
PDZRN3   1720000 perm   1422 sec   (1210 perm/sec)   p_kst 1.441860e-04   p_cons 2.730023e-01   p_joint 1.802326e-04

Joint ci ratio: 2.211983e-01	ci left: 1.614358e-04	ci right 2.021180e-04	k: 313	n:1730000
Cons ci ratio: 4.863386e-03	ci left: 2.723449e-01	ci right 2.736732e-01	k: 472305	n:1730000
KS ci ratio: 2.474102e-01	ci left: 1.271502e-04	ci right 1.635751e-04	k: 250	n:1730000
PDZRN3   1730000 perm   1436 sec   (1205 perm/sec)   p_kst 1.445087e-04   p_cons 2.730087e-01   p_joint 1.809249e-04

Joint ci ratio: 2.208469e-01	ci left: 1.610509e-04	ci right 2.015629e-04	k: 314	n:1740000
Cons ci ratio: 4.849799e-03	ci left: 2.723135e-01	ci right 2.736379e-01	k: 474977	n:1740000
KS ci ratio: 2.474103e-01	ci left: 1.264194e-04	ci right 1.626351e-04	k: 250	n:1740000
PDZRN3   1740000 perm   1451 sec   (1199 perm/sec)   p_kst 1.436782e-04   p_cons 2.729753e-01   p_joint 1.804598e-04

Joint ci ratio: 2.198026e-01	ci left: 1.617503e-04	ci right 2.022198e-04	k: 317	n:1750000
Cons ci ratio: 4.835391e-03	ci left: 2.723589e-01	ci right 2.736796e-01	k: 477783	n:1750000
KS ci ratio: 2.474104e-01	ci left: 1.256970e-04	ci right 1.617057e-04	k: 250	n:1750000
PDZRN3   1750000 perm   1465 sec   (1194 perm/sec)   p_kst 1.428571e-04   p_cons 2.730189e-01   p_joint 1.811429e-04

Joint ci ratio: 2.194579e-01	ci left: 1.613682e-04	ci right 2.016703e-04	k: 318	n:1760000
Cons ci ratio: 4.820698e-03	ci left: 2.724379e-01	ci right 2.737549e-01	k: 480649	n:1760000
KS ci ratio: 2.464305e-01	ci left: 1.260489e-04	ci right 1.619935e-04	k: 252	n:1760000
PDZRN3   1760000 perm   1479 sec   (1190 perm/sec)   p_kst 1.431818e-04   p_cons 2.730960e-01   p_joint 1.806818e-04

Joint ci ratio: 2.191148e-01	ci left: 1.609905e-04	ci right 2.011268e-04	k: 319	n:1770000
Cons ci ratio: 4.806958e-03	ci left: 2.724482e-01	ci right 2.737616e-01	k: 483395	n:1770000
KS ci ratio: 2.454622e-01	ci left: 1.263971e-04	ci right 1.622777e-04	k: 254	n:1770000
PDZRN3   1770000 perm   1494 sec   (1185 perm/sec)   p_kst 1.435028e-04   p_cons 2.731045e-01   p_joint 1.802260e-04

Joint ci ratio: 2.177579e-01	ci left: 1.622103e-04	ci right 2.023668e-04	k: 323	n:1780000
Cons ci ratio: 4.793891e-03	ci left: 2.724124e-01	ci right 2.737220e-01	k: 486059	n:1780000
KS ci ratio: 2.440308e-01	ci left: 1.272690e-04	ci right 1.631546e-04	k: 257	n:1780000
PDZRN3   1780000 perm   1508 sec   (1180 perm/sec)   p_kst 1.443820e-04   p_cons 2.730669e-01   p_joint 1.814607e-04

Joint ci ratio: 2.170889e-01	ci left: 1.623606e-04	ci right 2.024144e-04	k: 325	n:1790000
Cons ci ratio: 4.780318e-03	ci left: 2.724278e-01	ci right 2.737338e-01	k: 488814	n:1790000
KS ci ratio: 2.430904e-01	ci left: 1.276072e-04	ci right 1.634285e-04	k: 259	n:1790000
PDZRN3   1790000 perm   1523 sec   (1175 perm/sec)   p_kst 1.446927e-04   p_cons 2.730804e-01   p_joint 1.815642e-04

Joint ci ratio: 2.164260e-01	ci left: 1.625094e-04	ci right 2.024612e-04	k: 327	n:1800000
Cons ci ratio: 4.767046e-03	ci left: 2.724275e-01	ci right 2.737299e-01	k: 491541	n:1800000
KS ci ratio: 2.416998e-01	ci left: 1.284637e-04	ci right 1.642882e-04	k: 262	n:1800000
PDZRN3   1800000 perm   1538 sec   (1170 perm/sec)   p_kst 1.455556e-04   p_cons 2.730783e-01   p_joint 1.816667e-04

Joint ci ratio: 2.160969e-01	ci left: 1.621341e-04	ci right 2.019250e-04	k: 328	n:1810000
Cons ci ratio: 4.754228e-03	ci left: 2.723985e-01	ci right 2.736972e-01	k: 494216	n:1810000
KS ci ratio: 2.416999e-01	ci left: 1.277539e-04	ci right 1.633806e-04	k: 262	n:1810000
PDZRN3   1810000 perm   1553 sec   (1165 perm/sec)   p_kst 1.447514e-04   p_cons 2.730475e-01   p_joint 1.812155e-04

Joint ci ratio: 2.154430e-01	ci left: 1.622828e-04	ci right 2.019737e-04	k: 330	n:1820000
Cons ci ratio: 4.740988e-03	ci left: 2.724138e-01	ci right 2.737089e-01	k: 496971	n:1820000
KS ci ratio: 2.412418e-01	ci left: 1.275682e-04	ci right 1.630655e-04	k: 263	n:1820000
PDZRN3   1820000 perm   1568 sec   (1161 perm/sec)   p_kst 1.445055e-04   p_cons 2.730610e-01   p_joint 1.813187e-04

Joint ci ratio: 2.151184e-01	ci left: 1.619130e-04	ci right 2.014459e-04	k: 331	n:1830000
Cons ci ratio: 4.728132e-03	ci left: 2.724060e-01	ci right 2.736975e-01	k: 499684	n:1830000
KS ci ratio: 2.407862e-01	ci left: 1.273846e-04	ci right 1.627538e-04	k: 264	n:1830000
PDZRN3   1830000 perm   1583 sec   (1156 perm/sec)   p_kst 1.442623e-04   p_cons 2.730514e-01   p_joint 1.808743e-04

Joint ci ratio: 1.740693e-01	ci left: 2.515607e-04	ci right 3.000350e-04	k: 506	n:1840000
Cons ci ratio: 4.715353e-03	ci left: 2.724004e-01	ci right 2.736884e-01	k: 502401	n:1840000
KS ci ratio: 2.389891e-01	ci left: 1.287355e-04	ci right 1.641736e-04	k: 268	n:1840000
PDZRN3   1840000 perm   1599 sec   (1151 perm/sec)   p_kst 1.456522e-04   p_cons 2.730440e-01   p_joint 2.750000e-04

Joint ci ratio: 1.737270e-01	ci left: 2.512349e-04	ci right 2.995412e-04	k: 508	n:1850000
Cons ci ratio: 4.702288e-03	ci left: 2.724278e-01	ci right 2.737124e-01	k: 505179	n:1850000
KS ci ratio: 2.385461e-01	ci left: 1.285478e-04	ci right 1.638590e-04	k: 269	n:1850000
PDZRN3   1850000 perm   1614 sec   (1146 perm/sec)   p_kst 1.454054e-04   p_cons 2.730697e-01   p_joint 2.745946e-04

Joint ci ratio: 1.754597e-01	ci left: 2.447427e-04	ci right 2.923198e-04	k: 498	n:1860000
Cons ci ratio: 4.689507e-03	ci left: 2.724399e-01	ci right 2.737210e-01	k: 507929	n:1860000
KS ci ratio: 2.376675e-01	ci left: 1.288679e-04	ci right 1.641173e-04	k: 271	n:1860000
PDZRN3   1860000 perm   1629 sec   (1142 perm/sec)   p_kst 1.456989e-04   p_cons 2.730801e-01   p_joint 2.677419e-04

Joint ci ratio: 1.754598e-01	ci left: 2.434339e-04	ci right 2.907567e-04	k: 498	n:1870000
Cons ci ratio: 4.677203e-03	ci left: 2.724203e-01	ci right 2.736980e-01	k: 510620	n:1870000
KS ci ratio: 2.376676e-01	ci left: 1.281787e-04	ci right 1.632397e-04	k: 271	n:1870000
PDZRN3   1870000 perm   1644 sec   (1137 perm/sec)   p_kst 1.449198e-04   p_cons 2.730588e-01   p_joint 2.663102e-04

Joint ci ratio: 1.749348e-01	ci left: 2.436648e-04	ci right 2.908757e-04	k: 501	n:1880000
Cons ci ratio: 4.665088e-03	ci left: 2.723930e-01	ci right 2.736672e-01	k: 513296	n:1880000
KS ci ratio: 2.376677e-01	ci left: 1.274969e-04	ci right 1.623714e-04	k: 271	n:1880000
PDZRN3   1880000 perm   1660 sec   (1133 perm/sec)   p_kst 1.441489e-04   p_cons 2.730298e-01   p_joint 2.664894e-04

Joint ci ratio: 1.742419e-01	ci left: 2.443995e-04	ci right 2.915455e-04	k: 505	n:1890000
Cons ci ratio: 4.653092e-03	ci left: 2.723639e-01	ci right 2.736347e-01	k: 515968	n:1890000
KS ci ratio: 2.367986e-01	ci left: 1.278176e-04	ci right 1.626333e-04	k: 273	n:1890000
PDZRN3   1890000 perm   1675 sec   (1128 perm/sec)   p_kst 1.444444e-04   p_cons 2.729989e-01   p_joint 2.671958e-04

Joint ci ratio: 1.735572e-01	ci left: 2.451269e-04	ci right 2.922078e-04	k: 509	n:1900000
Cons ci ratio: 4.640830e-03	ci left: 2.723656e-01	ci right 2.736330e-01	k: 518698	n:1900000
KS ci ratio: 2.367987e-01	ci left: 1.271449e-04	ci right 1.617773e-04	k: 273	n:1900000
PDZRN3   1900000 perm   1691 sec   (1123 perm/sec)   p_kst 1.436842e-04   p_cons 2.729989e-01   p_joint 2.678947e-04

Joint ci ratio: 1.735573e-01	ci left: 2.438434e-04	ci right 2.906780e-04	k: 509	n:1910000
Cons ci ratio: 4.628354e-03	ci left: 2.723939e-01	ci right 2.736581e-01	k: 521479	n:1910000
KS ci ratio: 2.363678e-01	ci left: 1.269718e-04	ci right 1.614849e-04	k: 274	n:1910000
PDZRN3   1910000 perm   1707 sec   (1119 perm/sec)   p_kst 1.434555e-04   p_cons 2.730257e-01   p_joint 2.664921e-04

Joint ci ratio: 1.727126e-01	ci left: 2.450648e-04	ci right 2.918809e-04	k: 514	n:1920000
Cons ci ratio: 4.616196e-03	ci left: 2.724032e-01	ci right 2.736641e-01	k: 524224	n:1920000
KS ci ratio: 2.350889e-01	ci left: 1.277807e-04	ci right 1.622984e-04	k: 277	n:1920000
PDZRN3   1920000 perm   1722 sec   (1115 perm/sec)   p_kst 1.442708e-04   p_cons 2.730333e-01   p_joint 2.677083e-04

Joint ci ratio: 1.723783e-01	ci left: 2.447865e-04	ci right 2.914495e-04	k: 516	n:1930000
Cons ci ratio: 4.604098e-03	ci left: 2.724156e-01	ci right 2.736732e-01	k: 526975	n:1930000
KS ci ratio: 2.350890e-01	ci left: 1.271186e-04	ci right 1.614575e-04	k: 277	n:1930000
PDZRN3   1930000 perm   1738 sec   (1111 perm/sec)   p_kst 1.435233e-04   p_cons 2.730440e-01   p_joint 2.673575e-04

Joint ci ratio: 1.718803e-01	ci left: 2.450045e-04	ci right 2.915602e-04	k: 519	n:1940000
Cons ci ratio: 4.592254e-03	ci left: 2.724139e-01	ci right 2.736682e-01	k: 529699	n:1940000
KS ci ratio: 2.338306e-01	ci left: 1.279189e-04	ci right 1.622623e-04	k: 280	n:1940000
PDZRN3   1940000 perm   1756 sec   (1105 perm/sec)   p_kst 1.443299e-04   p_cons 2.730407e-01   p_joint 2.675258e-04

Joint ci ratio: 1.383053e-01	ci left: 3.833118e-04	ci right 4.407530e-04	k: 802	n:1950000
Cons ci ratio: 4.580964e-03	ci left: 2.723722e-01	ci right 2.736233e-01	k: 532345	n:1950000
KS ci ratio: 2.201512e-01	ci left: 1.446758e-04	ci right 1.809385e-04	k: 316	n:1950000
PDZRN3   1950000 perm   1771 sec   (1101 perm/sec)   p_kst 1.620513e-04   p_cons 2.729974e-01   p_joint 4.112821e-04

Joint ci ratio: 1.382193e-01	ci left: 3.818487e-04	ci right 4.390321e-04	k: 803	n:1960000
Cons ci ratio: 4.569550e-03	ci left: 2.723489e-01	ci right 2.735967e-01	k: 535026	n:1960000
KS ci ratio: 2.201513e-01	ci left: 1.439377e-04	ci right 1.800154e-04	k: 316	n:1960000
PDZRN3   1960000 perm   1787 sec   (1097 perm/sec)   p_kst 1.612245e-04   p_cons 2.729724e-01   p_joint 4.096939e-04

Joint ci ratio: 1.379622e-01	ci left: 3.813806e-04	ci right 4.383790e-04	k: 806	n:1970000
Cons ci ratio: 4.557983e-03	ci left: 2.723465e-01	ci right 2.735912e-01	k: 537748	n:1970000
KS ci ratio: 2.201514e-01	ci left: 1.432070e-04	ci right 1.791016e-04	k: 316	n:1970000
PDZRN3   1970000 perm   1803 sec   (1092 perm/sec)   p_kst 1.604061e-04   p_cons 2.729685e-01   p_joint 4.091371e-04

Joint ci ratio: 1.377065e-01	ci left: 3.809173e-04	ci right 4.377323e-04	k: 809	n:1980000
Cons ci ratio: 4.547047e-03	ci left: 2.722968e-01	ci right 2.735382e-01	k: 540376	n:1980000
KS ci ratio: 2.198050e-01	ci left: 1.429610e-04	ci right 1.787299e-04	k: 317	n:1980000
PDZRN3   1980000 perm   1819 sec   (1088 perm/sec)   p_kst 1.601010e-04   p_cons 2.729172e-01   p_joint 4.085859e-04

Joint ci ratio: 1.374523e-01	ci left: 3.804588e-04	ci right 4.370920e-04	k: 812	n:1990000
Cons ci ratio: 4.535631e-03	ci left: 2.722962e-01	ci right 2.735346e-01	k: 543101	n:1990000
KS ci ratio: 2.194602e-01	ci left: 1.427175e-04	ci right 1.783619e-04	k: 318	n:1990000
PDZRN3   1990000 perm   1835 sec   (1084 perm/sec)   p_kst 1.597990e-04   p_cons 2.729151e-01   p_joint 4.080402e-04

Joint ci ratio: 1.374524e-01	ci left: 3.785565e-04	ci right 4.349066e-04	k: 812	n:2000000
Cons ci ratio: 4.524764e-03	ci left: 2.722552e-01	ci right 2.734904e-01	k: 545745	n:2000000
KS ci ratio: 2.194603e-01	ci left: 1.420039e-04	ci right 1.774701e-04	k: 318	n:2000000
PDZRN3   2000000 perm   1851 sec   (1080 perm/sec)   p_kst 1.590000e-04   p_cons 2.728725e-01   p_joint 4.060000e-04

Joint ci ratio: 1.371996e-01	ci left: 3.781144e-04	ci right 4.342867e-04	k: 815	n:2010000
Cons ci ratio: 4.513458e-03	ci left: 2.722599e-01	ci right 2.734920e-01	k: 548480	n:2010000
KS ci ratio: 2.184355e-01	ci left: 1.427081e-04	ci right 1.781614e-04	k: 321	n:2010000
PDZRN3   2010000 perm   1868 sec   (1076 perm/sec)   p_kst 1.597015e-04   p_cons 2.728756e-01   p_joint 4.054726e-04

Joint ci ratio: 1.370318e-01	ci left: 3.771986e-04	ci right 4.331608e-04	k: 817	n:2020000
Cons ci ratio: 4.502518e-03	ci left: 2.722398e-01	ci right 2.734688e-01	k: 551165	n:2020000
KS ci ratio: 2.177603e-01	ci left: 1.429376e-04	ci right 1.783235e-04	k: 323	n:2020000
PDZRN3   2020000 perm   1884 sec   (1072 perm/sec)   p_kst 1.599010e-04   p_cons 2.728540e-01   p_joint 4.044554e-04

Joint ci ratio: 1.366149e-01	ci left: 3.777193e-04	ci right 4.335743e-04	k: 822	n:2030000
Cons ci ratio: 4.491451e-03	ci left: 2.722381e-01	ci right 2.734640e-01	k: 553887	n:2030000
KS ci ratio: 2.167590e-01	ci left: 1.436309e-04	ci right 1.790032e-04	k: 326	n:2030000
PDZRN3   2030000 perm   1900 sec   (1068 perm/sec)   p_kst 1.605911e-04   p_cons 2.728507e-01   p_joint 4.049261e-04

Joint ci ratio: 1.367814e-01	ci left: 3.749208e-04	ci right 4.304351e-04	k: 820	n:2040000
Cons ci ratio: 4.480499e-03	ci left: 2.722335e-01	ci right 2.734564e-01	k: 556603	n:2040000
KS ci ratio: 2.164283e-01	ci left: 1.433905e-04	ci right 1.786424e-04	k: 327	n:2040000
PDZRN3   2040000 perm   1916 sec   (1065 perm/sec)   p_kst 1.602941e-04   p_cons 2.728446e-01   p_joint 4.019608e-04

Joint ci ratio: 1.364494e-01	ci left: 3.749764e-04	ci right 4.303533e-04	k: 824	n:2050000
Cons ci ratio: 4.469626e-03	ci left: 2.722289e-01	ci right 2.734488e-01	k: 559319	n:2050000
KS ci ratio: 2.157715e-01	ci left: 1.436138e-04	ci right 1.787993e-04	k: 329	n:2050000
PDZRN3   2050000 perm   1933 sec   (1061 perm/sec)   p_kst 1.604878e-04   p_cons 2.728385e-01   p_joint 4.019512e-04

Joint ci ratio: 1.361198e-01	ci left: 3.750317e-04	ci right 4.302721e-04	k: 828	n:2060000
Cons ci ratio: 4.458526e-03	ci left: 2.722515e-01	ci right 2.734685e-01	k: 562091	n:2060000
KS ci ratio: 2.154453e-01	ci left: 1.433759e-04	ci right 1.784430e-04	k: 330	n:2060000
PDZRN3   2060000 perm   1950 sec   (1057 perm/sec)   p_kst 1.601942e-04   p_cons 2.728597e-01   p_joint 4.019417e-04

Joint ci ratio: 1.358742e-01	ci left: 3.746199e-04	ci right 4.296921e-04	k: 831	n:2070000
Cons ci ratio: 4.447460e-03	ci left: 2.722783e-01	ci right 2.734924e-01	k: 564872	n:2070000
KS ci ratio: 2.151206e-01	ci left: 1.431403e-04	ci right 1.780901e-04	k: 331	n:2070000
PDZRN3   2070000 perm   1966 sec   (1053 perm/sec)   p_kst 1.599034e-04   p_cons 2.728850e-01   p_joint 4.014493e-04

Joint ci ratio: 1.354677e-01	ci left: 3.751411e-04	ci right 4.301116e-04	k: 836	n:2080000
Cons ci ratio: 4.437019e-03	ci left: 2.722563e-01	ci right 2.734674e-01	k: 567552	n:2080000
KS ci ratio: 2.144756e-01	ci left: 1.433619e-04	ci right 1.782470e-04	k: 333	n:2080000
PDZRN3   2080000 perm   1983 sec   (1049 perm/sec)   p_kst 1.600962e-04   p_cons 2.728615e-01   p_joint 4.019231e-04

Joint ci ratio: 1.358745e-01	ci left: 3.710350e-04	ci right 4.255802e-04	k: 831	n:2090000
Cons ci ratio: 4.426223e-03	ci left: 2.722727e-01	ci right 2.734810e-01	k: 570312	n:2090000
KS ci ratio: 2.141553e-01	ci left: 1.431288e-04	ci right 1.778983e-04	k: 334	n:2090000
PDZRN3   2090000 perm   2001 sec   (1044 perm/sec)   p_kst 1.598086e-04   p_cons 2.728766e-01   p_joint 3.976077e-04

Joint ci ratio: 1.362025e-01	ci left: 3.674282e-04	ci right 4.215842e-04	k: 827	n:2100000
Cons ci ratio: 4.415910e-03	ci left: 2.722529e-01	ci right 2.734582e-01	k: 572996	n:2100000
KS ci ratio: 2.135188e-01	ci left: 1.433486e-04	ci right 1.780545e-04	k: 336	n:2100000
PDZRN3   2100000 perm   2020 sec   (1040 perm/sec)   p_kst 1.600000e-04   p_cons 2.728552e-01   p_joint 3.938095e-04

Joint ci ratio: 1.360384e-01	ci left: 3.666024e-04	ci right 4.205663e-04	k: 829	n:2110000
Cons ci ratio: 4.404804e-03	ci left: 2.723109e-01	ci right 2.735134e-01	k: 575844	n:2110000
KS ci ratio: 2.135189e-01	ci left: 1.426692e-04	ci right 1.772106e-04	k: 336	n:2110000
PDZRN3   2110000 perm   2040 sec   (1034 perm/sec)   p_kst 1.592417e-04   p_cons 2.729118e-01   p_joint 3.928910e-04

Joint ci ratio: 1.358748e-01	ci left: 3.657844e-04	ci right 4.195579e-04	k: 831	n:2120000
Cons ci ratio: 4.394451e-03	ci left: 2.723080e-01	ci right 2.735077e-01	k: 578564	n:2120000
KS ci ratio: 2.132028e-01	ci left: 1.424427e-04	ci right 1.768716e-04	k: 337	n:2120000
PDZRN3   2120000 perm   2059 sec   (1030 perm/sec)   p_kst 1.589623e-04   p_cons 2.729075e-01   p_joint 3.919811e-04

Joint ci ratio: 1.366162e-01	ci left: 3.599857e-04	ci right 4.132190e-04	k: 822	n:2130000
Cons ci ratio: 4.384093e-03	ci left: 2.723122e-01	ci right 2.735091e-01	k: 581299	n:2130000
KS ci ratio: 2.128882e-01	ci left: 1.422184e-04	ci right 1.765357e-04	k: 338	n:2130000
PDZRN3   2130000 perm   2079 sec   (1025 perm/sec)   p_kst 1.586854e-04   p_cons 2.729103e-01   p_joint 3.859155e-04

Joint ci ratio: 1.372013e-01	ci left: 3.551445e-04	ci right 4.079051e-04	k: 815	n:2140000
Cons ci ratio: 4.373658e-03	ci left: 2.723299e-01	ci right 2.735240e-01	k: 584063	n:2140000
KS ci ratio: 2.125749e-01	ci left: 1.419962e-04	ci right 1.762029e-04	k: 339	n:2140000
PDZRN3   2140000 perm   2098 sec   (1020 perm/sec)   p_kst 1.584112e-04   p_cons 2.729266e-01   p_joint 3.808411e-04

Joint ci ratio: 1.369498e-01	ci left: 3.548402e-04	ci right 4.074511e-04	k: 818	n:2150000
Cons ci ratio: 4.363067e-03	ci left: 2.723683e-01	ci right 2.735597e-01	k: 586872	n:2150000
KS ci ratio: 2.119524e-01	ci left: 1.422166e-04	ci right 1.763630e-04	k: 341	n:2150000
PDZRN3   2150000 perm   2118 sec   (1015 perm/sec)   p_kst 1.586047e-04   p_cons 2.729637e-01   p_joint 3.804651e-04

Joint ci ratio: 1.375391e-01	ci left: 3.500679e-04	ci right 4.022129e-04	k: 811	n:2160000
Cons ci ratio: 4.353177e-03	ci left: 2.723495e-01	ci right 2.735381e-01	k: 589558	n:2160000
KS ci ratio: 2.116432e-01	ci left: 1.419966e-04	ci right 1.760340e-04	k: 342	n:2160000
PDZRN3   2160000 perm   2137 sec   (1011 perm/sec)   p_kst 1.583333e-04   p_cons 2.729435e-01   p_joint 3.754630e-04

Joint ci ratio: 1.371176e-01	ci left: 3.506796e-04	ci right 4.027426e-04	k: 816	n:2170000
Cons ci ratio: 4.343188e-03	ci left: 2.723461e-01	ci right 2.735319e-01	k: 592277	n:2170000
KS ci ratio: 2.113354e-01	ci left: 1.417786e-04	ci right 1.757079e-04	k: 343	n:2170000
PDZRN3   2170000 perm   2157 sec   (1006 perm/sec)   p_kst 1.580645e-04   p_cons 2.729387e-01   p_joint 3.760369e-04

Joint ci ratio: 1.408764e-01	ci left: 3.300318e-04	ci right 3.804853e-04	k: 773	n:2180000
Cons ci ratio: 4.333462e-03	ci left: 2.723248e-01	ci right 2.735079e-01	k: 594957	n:2180000
KS ci ratio: 2.107237e-01	ci left: 1.419972e-04	ci right 1.758678e-04	k: 345	n:2180000
PDZRN3   2180000 perm   2175 sec   (1002 perm/sec)   p_kst 1.582569e-04   p_cons 2.729161e-01   p_joint 3.545872e-04

Joint ci ratio: 1.405138e-01	ci left: 3.302870e-04	ci right 3.806387e-04	k: 777	n:2190000
Cons ci ratio: 4.323568e-03	ci left: 2.723252e-01	ci right 2.735056e-01	k: 597684	n:2190000
KS ci ratio: 2.104199e-01	ci left: 1.417814e-04	ci right 1.755454e-04	k: 346	n:2190000
PDZRN3   2190000 perm   2193 sec   (999 perm/sec)   p_kst 1.579909e-04   p_cons 2.729151e-01   p_joint 3.547945e-04

Joint ci ratio: 1.404237e-01	ci left: 3.292242e-04	ci right 3.793790e-04	k: 778	n:2200000
Cons ci ratio: 4.313746e-03	ci left: 2.723251e-01	ci right 2.735028e-01	k: 600410	n:2200000
KS ci ratio: 2.101174e-01	ci left: 1.415675e-04	ci right 1.752259e-04	k: 347	n:2200000
PDZRN3   2200000 perm   2210 sec   (995 perm/sec)   p_kst 1.577273e-04   p_cons 2.729136e-01   p_joint 3.536364e-04

Joint ci ratio: 1.402438e-01	ci left: 3.286077e-04	ci right 3.785991e-04	k: 780	n:2210000
Cons ci ratio: 4.304015e-03	ci left: 2.723227e-01	ci right 2.734978e-01	k: 603131	n:2210000
KS ci ratio: 2.098162e-01	ci left: 1.413556e-04	ci right 1.749093e-04	k: 348	n:2210000
PDZRN3   2210000 perm   2228 sec   (992 perm/sec)   p_kst 1.574661e-04   p_cons 2.729100e-01   p_joint 3.529412e-04

Joint ci ratio: 1.492086e-01	ci left: 2.876189e-04	ci right 3.344214e-04	k: 689	n:2220000
Cons ci ratio: 4.294623e-03	ci left: 2.722952e-01	ci right 2.734676e-01	k: 605796	n:2220000
KS ci ratio: 2.095162e-01	ci left: 1.411457e-04	ci right 1.745955e-04	k: 349	n:2220000
PDZRN3   2220000 perm   2245 sec   (989 perm/sec)   p_kst 1.572072e-04   p_cons 2.728811e-01   p_joint 3.103604e-04

Joint ci ratio: 1.489929e-01	ci left: 2.871925e-04	ci right 3.338521e-04	k: 691	n:2230000
Cons ci ratio: 4.284813e-03	ci left: 2.723123e-01	ci right 2.734820e-01	k: 608560	n:2230000
KS ci ratio: 2.092176e-01	ci left: 1.409377e-04	ci right 1.742845e-04	k: 350	n:2230000
PDZRN3   2230000 perm   2264 sec   (985 perm/sec)   p_kst 1.569507e-04   p_cons 2.728969e-01   p_joint 3.098655e-04

Joint ci ratio: 1.487781e-01	ci left: 2.867700e-04	ci right 3.332878e-04	k: 693	n:2240000
Cons ci ratio: 4.275603e-03	ci left: 2.722797e-01	ci right 2.734468e-01	k: 611213	n:2240000
KS ci ratio: 2.086241e-01	ci left: 1.411546e-04	ci right 1.744459e-04	k: 352	n:2240000
PDZRN3   2240000 perm   2281 sec   (982 perm/sec)   p_kst 1.571429e-04   p_cons 2.728629e-01   p_joint 3.093750e-04

Joint ci ratio: 1.494257e-01	ci left: 2.829283e-04	ci right 3.290405e-04	k: 687	n:2250000
Cons ci ratio: 4.266142e-03	ci left: 2.722763e-01	ci right 2.734408e-01	k: 613931	n:2250000
KS ci ratio: 2.086241e-01	ci left: 1.405273e-04	ci right 1.736706e-04	k: 352	n:2250000
PDZRN3   2250000 perm   2299 sec   (979 perm/sec)   p_kst 1.564444e-04   p_cons 2.728582e-01   p_joint 3.053333e-04

Joint ci ratio: 1.495346e-01	ci left: 2.812504e-04	ci right 3.271256e-04	k: 686	n:2260000
Cons ci ratio: 4.256644e-03	ci left: 2.722822e-01	ci right 2.734441e-01	k: 616670	n:2260000
KS ci ratio: 2.080356e-01	ci left: 1.407443e-04	ci right 1.738332e-04	k: 354	n:2260000
PDZRN3   2260000 perm   2317 sec   (975 perm/sec)   p_kst 1.566372e-04   p_cons 2.728628e-01   p_joint 3.035398e-04

Joint ci ratio: 1.493174e-01	ci left: 2.808596e-04	ci right 3.265985e-04	k: 688	n:2270000
Cons ci ratio: 4.247001e-03	ci left: 2.723074e-01	ci right 2.734668e-01	k: 619453	n:2270000
KS ci ratio: 2.077432e-01	ci left: 1.405418e-04	ci right 1.735308e-04	k: 355	n:2270000
PDZRN3   2270000 perm   2336 sec   (972 perm/sec)   p_kst 1.563877e-04   p_cons 2.728868e-01   p_joint 3.030837e-04

Joint ci ratio: 1.208884e-01	ci left: 4.330946e-04	ci right 4.892395e-04	k: 1050	n:2280000
Cons ci ratio: 4.237813e-03	ci left: 2.722960e-01	ci right 2.734528e-01	k: 622153	n:2280000
KS ci ratio: 2.068734e-01	ci left: 1.411729e-04	ci right 1.741537e-04	k: 358	n:2280000
PDZRN3   2280000 perm   2354 sec   (968 perm/sec)   p_kst 1.570175e-04   p_cons 2.728741e-01   p_joint 4.605263e-04

Joint ci ratio: 1.207162e-01	ci left: 4.324738e-04	ci right 4.884527e-04	k: 1053	n:2290000
Cons ci ratio: 4.228376e-03	ci left: 2.723135e-01	ci right 2.734678e-01	k: 624919	n:2290000
KS ci ratio: 2.065859e-01	ci left: 1.409705e-04	ci right 1.738525e-04	k: 359	n:2290000
PDZRN3   2290000 perm   2384 sec   (961 perm/sec)   p_kst 1.567686e-04   p_cons 2.728904e-01   p_joint 4.598253e-04

Joint ci ratio: 1.204309e-01	ci left: 4.327018e-04	ci right 4.885685e-04	k: 1058	n:2300000
Cons ci ratio: 4.218679e-03	ci left: 2.723613e-01	ci right 2.735132e-01	k: 627755	n:2300000
KS ci ratio: 2.060144e-01	ci left: 1.411823e-04	ci right 1.740110e-04	k: 361	n:2300000
PDZRN3   2300000 perm   2404 sec   (957 perm/sec)   p_kst 1.569565e-04   p_cons 2.729370e-01   p_joint 4.600000e-04

Joint ci ratio: 1.217611e-01	ci left: 4.211734e-04	ci right 4.761955e-04	k: 1035	n:2310000
Cons ci ratio: 4.209622e-03	ci left: 2.723546e-01	ci right 2.735040e-01	k: 630466	n:2310000
KS ci ratio: 2.060144e-01	ci left: 1.405711e-04	ci right 1.732577e-04	k: 361	n:2310000
PDZRN3   2310000 perm   2422 sec   (954 perm/sec)   p_kst 1.562771e-04   p_cons 2.729290e-01   p_joint 4.480519e-04

Joint ci ratio: 1.225928e-01	ci left: 4.135078e-04	ci right 4.679242e-04	k: 1021	n:2320000
Cons ci ratio: 4.200523e-03	ci left: 2.723575e-01	ci right 2.735043e-01	k: 633199	n:2320000
KS ci ratio: 2.051660e-01	ci left: 1.411917e-04	ci right 1.738705e-04	k: 364	n:2320000
PDZRN3   2320000 perm   2440 sec   (951 perm/sec)   p_kst 1.568966e-04   p_cons 2.729306e-01   p_joint 4.400862e-04

Joint ci ratio: 1.223536e-01	ci left: 4.133972e-04	ci right 4.676853e-04	k: 1025	n:2330000
Cons ci ratio: 4.191755e-03	ci left: 2.723345e-01	ci right 2.734789e-01	k: 635872	n:2330000
KS ci ratio: 2.046062e-01	ci left: 1.414001e-04	ci right 1.740266e-04	k: 366	n:2330000
PDZRN3   2330000 perm   2460 sec   (947 perm/sec)   p_kst 1.570815e-04   p_cons 2.729064e-01   p_joint 4.399142e-04

Joint ci ratio: 1.219382e-01	ci left: 4.145306e-04	ci right 4.687694e-04	k: 1032	n:2340000
Cons ci ratio: 4.182640e-03	ci left: 2.723498e-01	ci right 2.734918e-01	k: 638634	n:2340000
KS ci ratio: 2.037749e-01	ci left: 1.420123e-04	ci right 1.746304e-04	k: 369	n:2340000
PDZRN3   2340000 perm   2479 sec   (944 perm/sec)   p_kst 1.576923e-04   p_cons 2.729205e-01   p_joint 4.410256e-04

Joint ci ratio: 1.216442e-01	ci left: 4.148295e-04	ci right 4.689671e-04	k: 1037	n:2350000
Cons ci ratio: 4.173961e-03	ci left: 2.723293e-01	ci right 2.734687e-01	k: 641312	n:2350000
KS ci ratio: 2.037750e-01	ci left: 1.414080e-04	ci right 1.738873e-04	k: 369	n:2350000
PDZRN3   2350000 perm   2498 sec   (941 perm/sec)   p_kst 1.570213e-04   p_cons 2.728987e-01   p_joint 4.412766e-04

Joint ci ratio: 1.215272e-01	ci left: 4.138935e-04	ci right 4.678532e-04	k: 1039	n:2360000
Cons ci ratio: 4.165197e-03	ci left: 2.723220e-01	ci right 2.734591e-01	k: 644021	n:2360000
KS ci ratio: 2.032265e-01	ci left: 1.416131e-04	ci right 1.740411e-04	k: 371	n:2360000
PDZRN3   2360000 perm   2520 sec   (937 perm/sec)   p_kst 1.572034e-04   p_cons 2.728903e-01   p_joint 4.402542e-04

Joint ci ratio: 1.214106e-01	ci left: 4.129653e-04	ci right 4.667486e-04	k: 1041	n:2370000
Cons ci ratio: 4.156471e-03	ci left: 2.723165e-01	ci right 2.734511e-01	k: 646734	n:2370000
KS ci ratio: 2.032265e-01	ci left: 1.410155e-04	ci right 1.733068e-04	k: 371	n:2370000
PDZRN3   2370000 perm   2539 sec   (934 perm/sec)   p_kst 1.565401e-04   p_cons 2.728835e-01   p_joint 4.392405e-04

Joint ci ratio: 1.210625e-01	ci left: 4.136747e-04	ci right 4.673849e-04	k: 1047	n:2380000
Cons ci ratio: 4.147597e-03	ci left: 2.723304e-01	ci right 2.734626e-01	k: 649493	n:2380000
KS ci ratio: 2.024119e-01	ci left: 1.416195e-04	ci right 1.739030e-04	k: 374	n:2380000
PDZRN3   2380000 perm   2558 sec   (931 perm/sec)   p_kst 1.571429e-04   p_cons 2.728962e-01   p_joint 4.399160e-04

Joint ci ratio: 1.208896e-01	ci left: 4.131611e-04	ci right 4.667225e-04	k: 1050	n:2390000
Cons ci ratio: 4.139077e-03	ci left: 2.723157e-01	ci right 2.734455e-01	k: 652184	n:2390000
KS ci ratio: 2.024120e-01	ci left: 1.410270e-04	ci right 1.731754e-04	k: 374	n:2390000
PDZRN3   2390000 perm   2577 sec   (928 perm/sec)   p_kst 1.564854e-04   p_cons 2.728803e-01   p_joint 4.393305e-04

Joint ci ratio: 1.206603e-01	ci left: 4.130559e-04	ci right 4.664948e-04	k: 1054	n:2400000
Cons ci ratio: 4.130574e-03	ci left: 2.723044e-01	ci right 2.734319e-01	k: 654883	n:2400000
KS ci ratio: 2.021427e-01	ci left: 1.408349e-04	ci right 1.728916e-04	k: 375	n:2400000
PDZRN3   2400000 perm   2596 sec   (924 perm/sec)   p_kst 1.562500e-04   p_cons 2.728679e-01   p_joint 4.391667e-04

Joint ci ratio: 1.221166e-01	ci left: 4.012834e-04	ci right 4.538711e-04	k: 1029	n:2410000
Cons ci ratio: 4.121705e-03	ci left: 2.723335e-01	ci right 2.734587e-01	k: 657679	n:2410000
KS ci ratio: 2.010759e-01	ci left: 1.418265e-04	ci right 1.739176e-04	k: 379	n:2410000
PDZRN3   2410000 perm   2616 sec   (921 perm/sec)   p_kst 1.572614e-04   p_cons 2.728959e-01   p_joint 4.269710e-04

Joint ci ratio: 1.223546e-01	ci left: 3.980228e-04	ci right 4.502922e-04	k: 1025	n:2420000
Cons ci ratio: 4.113193e-03	ci left: 2.723335e-01	ci right 2.734563e-01	k: 660405	n:2420000
KS ci ratio: 2.010759e-01	ci left: 1.412405e-04	ci right 1.731989e-04	k: 379	n:2420000
PDZRN3   2420000 perm   2635 sec   (918 perm/sec)   p_kst 1.566116e-04   p_cons 2.728946e-01   p_joint 4.235537e-04

Joint ci ratio: 1.221761e-01	ci left: 3.975816e-04	ci right 4.497115e-04	k: 1028	n:2430000
Cons ci ratio: 4.104623e-03	ci left: 2.723441e-01	ci right 2.734647e-01	k: 663157	n:2430000
KS ci ratio: 2.010760e-01	ci left: 1.406592e-04	ci right 1.724862e-04	k: 379	n:2430000
PDZRN3   2430000 perm   2668 sec   (911 perm/sec)   p_kst 1.559671e-04   p_cons 2.729041e-01   p_joint 4.230453e-04

Joint ci ratio: 1.219393e-01	ci left: 3.975415e-04	ci right 4.495578e-04	k: 1032	n:2440000
Cons ci ratio: 4.096229e-03	ci left: 2.723428e-01	ci right 2.734610e-01	k: 665880	n:2440000
KS ci ratio: 2.005489e-01	ci left: 1.408612e-04	ci right 1.726401e-04	k: 381	n:2440000
PDZRN3   2440000 perm   2692 sec   (906 perm/sec)   p_kst 1.561475e-04   p_cons 2.729016e-01   p_joint 4.229508e-04

Joint ci ratio: 1.228953e-01	ci left: 3.895881e-04	ci right 4.409925e-04	k: 1016	n:2450000
Cons ci ratio: 4.087907e-03	ci left: 2.723394e-01	ci right 2.734554e-01	k: 668598	n:2450000
KS ci ratio: 1.997660e-01	ci left: 1.414494e-04	ci right 1.732212e-04	k: 384	n:2450000
PDZRN3   2450000 perm   2712 sec   (904 perm/sec)   p_kst 1.567347e-04   p_cons 2.728971e-01   p_joint 4.146939e-04

Joint ci ratio: 1.227747e-01	ci left: 3.887924e-04	ci right 4.400378e-04	k: 1018	n:2460000
Cons ci ratio: 4.079665e-03	ci left: 2.723333e-01	ci right 2.734469e-01	k: 671309	n:2460000
KS ci ratio: 1.992491e-01	ci left: 1.416468e-04	ci right 1.733706e-04	k: 386	n:2460000
PDZRN3   2460000 perm   2731 sec   (901 perm/sec)   p_kst 1.569106e-04   p_cons 2.728898e-01   p_joint 4.138211e-04

Joint ci ratio: 1.224746e-01	ci left: 3.891806e-04	ci right 4.403426e-04	k: 1023	n:2470000
Cons ci ratio: 4.071506e-03	ci left: 2.723239e-01	ci right 2.734353e-01	k: 674012	n:2470000
KS ci ratio: 1.987362e-01	ci left: 1.418427e-04	ci right 1.735187e-04	k: 388	n:2470000
PDZRN3   2470000 perm   2750 sec   (898 perm/sec)   p_kst 1.570850e-04   p_cons 2.728794e-01   p_joint 4.141700e-04

Joint ci ratio: 1.219989e-01	ci left: 3.907385e-04	ci right 4.418914e-04	k: 1031	n:2480000
Cons ci ratio: 4.063461e-03	ci left: 2.723082e-01	ci right 2.734173e-01	k: 676699	n:2480000
KS ci ratio: 1.979742e-01	ci left: 1.424204e-04	ci right 1.740887e-04	k: 391	n:2480000
PDZRN3   2480000 perm   2770 sec   (895 perm/sec)   p_kst 1.576613e-04   p_cons 2.728625e-01   p_joint 4.157258e-04

Joint ci ratio: 1.219990e-01	ci left: 3.891693e-04	ci right 4.401168e-04	k: 1031	n:2490000
Cons ci ratio: 4.055431e-03	ci left: 2.722958e-01	ci right 2.734027e-01	k: 679394	n:2490000
KS ci ratio: 1.979743e-01	ci left: 1.418484e-04	ci right 1.733896e-04	k: 391	n:2490000
PDZRN3   2490000 perm   2789 sec   (893 perm/sec)   p_kst 1.570281e-04   p_cons 2.728490e-01   p_joint 4.140562e-04

Joint ci ratio: 1.215872e-01	ci left: 3.903273e-04	ci right 4.412416e-04	k: 1038	n:2500000
Cons ci ratio: 4.047184e-03	ci left: 2.723095e-01	ci right 2.734142e-01	k: 682154	n:2500000
KS ci ratio: 1.974711e-01	ci left: 1.420414e-04	ci right 1.735356e-04	k: 393	n:2500000
PDZRN3   2500000 perm   2818 sec   (887 perm/sec)   p_kst 1.572000e-04   p_cons 2.728616e-01   p_joint 4.152000e-04

Joint ci ratio: 1.221769e-01	ci left: 3.849095e-04	ci right 4.353782e-04	k: 1028	n:2510000
Cons ci ratio: 4.038922e-03	ci left: 2.723295e-01	ci right 2.734320e-01	k: 684930	n:2510000
KS ci ratio: 1.972210e-01	ci left: 1.418542e-04	ci right 1.732623e-04	k: 394	n:2510000
PDZRN3   2510000 perm   2858 sec   (878 perm/sec)   p_kst 1.569721e-04   p_cons 2.728805e-01   p_joint 4.095618e-04

Joint ci ratio: 1.218812e-01	ci left: 3.853057e-04	ci right 4.356952e-04	k: 1033	n:2520000
Cons ci ratio: 4.031153e-03	ci left: 2.723057e-01	ci right 2.734060e-01	k: 687596	n:2520000
KS ci ratio: 1.967236e-01	ci left: 1.420458e-04	ci right 1.734075e-04	k: 396	n:2520000
PDZRN3   2520000 perm   2898 sec   (870 perm/sec)   p_kst 1.571429e-04   p_cons 2.728556e-01   p_joint 4.099206e-04

Joint ci ratio: 1.215875e-01	ci left: 3.856989e-04	ci right 4.360095e-04	k: 1038	n:2530000
Cons ci ratio: 4.023293e-03	ci left: 2.722955e-01	ci right 2.733936e-01	k: 690296	n:2530000
KS ci ratio: 1.959845e-01	ci left: 1.426119e-04	ci right 1.739660e-04	k: 399	n:2530000
PDZRN3   2530000 perm   2918 sec   (867 perm/sec)   p_kst 1.577075e-04   p_cons 2.728443e-01   p_joint 4.102767e-04

Joint ci ratio: 1.213542e-01	ci left: 3.857073e-04	ci right 4.359156e-04	k: 1042	n:2540000
Cons ci ratio: 4.015379e-03	ci left: 2.722952e-01	ci right 2.733911e-01	k: 693021	n:2540000
KS ci ratio: 1.952536e-01	ci left: 1.431737e-04	ci right 1.745200e-04	k: 402	n:2540000
PDZRN3   2540000 perm   2942 sec   (863 perm/sec)   p_kst 1.582677e-04   p_cons 2.728429e-01   p_joint 4.102362e-04

Joint ci ratio: 1.212961e-01	ci left: 3.845750e-04	ci right 4.346102e-04	k: 1043	n:2550000
Cons ci ratio: 4.007527e-03	ci left: 2.722934e-01	ci right 2.733872e-01	k: 695742	n:2550000
KS ci ratio: 1.950118e-01	ci left: 1.429852e-04	ci right 1.742469e-04	k: 403	n:2550000
PDZRN3   2550000 perm   2962 sec   (861 perm/sec)   p_kst 1.580392e-04   p_cons 2.728400e-01   p_joint 4.090196e-04

Joint ci ratio: 1.211222e-01	ci left: 3.842091e-04	ci right 4.341199e-04	k: 1046	n:2560000
Cons ci ratio: 3.999824e-03	ci left: 2.722814e-01	ci right 2.733730e-01	k: 698437	n:2560000
KS ci ratio: 1.950119e-01	ci left: 1.424266e-04	ci right 1.735663e-04	k: 403	n:2560000
PDZRN3   2560000 perm   2982 sec   (858 perm/sec)   p_kst 1.574219e-04   p_cons 2.728270e-01   p_joint 4.085937e-04

Joint ci ratio: 1.251321e-01	ci left: 3.578236e-04	ci right 4.059598e-04	k: 980	n:2570000
Cons ci ratio: 3.992188e-03	ci left: 2.722672e-01	ci right 2.733567e-01	k: 701126	n:2570000
KS ci ratio: 1.947710e-01	ci left: 1.422426e-04	ci right 1.732990e-04	k: 404	n:2570000
PDZRN3   2570000 perm   3002 sec   (856 perm/sec)   p_kst 1.571984e-04   p_cons 2.728117e-01   p_joint 3.813230e-04

Joint ci ratio: 1.247511e-01	ci left: 3.586896e-04	ci right 4.067845e-04	k: 986	n:2580000
Cons ci ratio: 3.984122e-03	ci left: 2.723003e-01	ci right 2.733878e-01	k: 703937	n:2580000
KS ci ratio: 1.942918e-01	ci left: 1.424287e-04	ci right 1.734402e-04	k: 406	n:2580000
PDZRN3   2580000 perm   3022 sec   (854 perm/sec)   p_kst 1.573643e-04   p_cons 2.728438e-01   p_joint 3.821705e-04

Joint ci ratio: 1.244991e-01	ci left: 3.588009e-04	ci right 4.068064e-04	k: 990	n:2590000
Cons ci ratio: 3.976680e-03	ci left: 2.722758e-01	ci right 2.733610e-01	k: 706599	n:2590000
KS ci ratio: 1.942919e-01	ci left: 1.418788e-04	ci right 1.727705e-04	k: 406	n:2590000
PDZRN3   2590000 perm   3042 sec   (851 perm/sec)   p_kst 1.567568e-04   p_cons 2.728181e-01   p_joint 3.822394e-04

Joint ci ratio: 1.243111e-01	ci left: 3.585389e-04	ci right 4.064315e-04	k: 993	n:2600000
Cons ci ratio: 3.968937e-03	ci left: 2.722856e-01	ci right 2.733688e-01	k: 709350	n:2600000
KS ci ratio: 1.938162e-01	ci left: 1.420649e-04	ci right 1.729126e-04	k: 408	n:2600000
PDZRN3   2600000 perm   3063 sec   (849 perm/sec)   p_kst 1.569231e-04   p_cons 2.728269e-01   p_joint 3.819231e-04

Joint ci ratio: 1.241862e-01	ci left: 3.579076e-04	ci right 4.056644e-04	k: 995	n:2610000
Cons ci ratio: 3.961071e-03	ci left: 2.723122e-01	ci right 2.733933e-01	k: 712145	n:2610000
KS ci ratio: 1.935798e-01	ci left: 1.418852e-04	ci right 1.726518e-04	k: 409	n:2610000
PDZRN3   2610000 perm   3084 sec   (846 perm/sec)   p_kst 1.567050e-04   p_cons 2.728525e-01   p_joint 3.812261e-04

Joint ci ratio: 1.238757e-01	ci left: 3.583908e-04	ci right 4.060836e-04	k: 1000	n:2620000
Cons ci ratio: 3.953515e-03	ci left: 2.723122e-01	ci right 2.733913e-01	k: 714871	n:2620000
KS ci ratio: 1.933441e-01	ci left: 1.417068e-04	ci right 1.723930e-04	k: 410	n:2620000
PDZRN3   2620000 perm   3105 sec   (844 perm/sec)   p_kst 1.564885e-04   p_cons 2.728515e-01   p_joint 3.816794e-04

Joint ci ratio: 1.236289e-01	ci left: 3.585019e-04	ci right 4.061076e-04	k: 1004	n:2630000
Cons ci ratio: 3.946178e-03	ci left: 2.722944e-01	ci right 2.733715e-01	k: 717550	n:2630000
KS ci ratio: 1.928754e-01	ci left: 1.418917e-04	ci right 1.725346e-04	k: 412	n:2630000
PDZRN3   2630000 perm   3126 sec   (841 perm/sec)   p_kst 1.566540e-04   p_cons 2.728327e-01   p_joint 3.817490e-04

Joint ci ratio: 1.235061e-01	ci left: 3.578781e-04	ci right 4.053503e-04	k: 1006	n:2640000
Cons ci ratio: 3.938740e-03	ci left: 2.722912e-01	ci right 2.733661e-01	k: 720267	n:2640000
KS ci ratio: 1.928755e-01	ci left: 1.413542e-04	ci right 1.718811e-04	k: 412	n:2640000
PDZRN3   2640000 perm   3155 sec   (837 perm/sec)   p_kst 1.560606e-04   p_cons 2.728284e-01   p_joint 3.810606e-04

Joint ci ratio: 1.233226e-01	ci left: 3.576247e-04	ci right 4.049877e-04	k: 1009	n:2650000
Cons ci ratio: 3.931400e-03	ci left: 2.722823e-01	ci right 2.733552e-01	k: 722969	n:2650000
KS ci ratio: 1.928755e-01	ci left: 1.408208e-04	ci right 1.712325e-04	k: 412	n:2650000
PDZRN3   2650000 perm   3190 sec   (831 perm/sec)   p_kst 1.554717e-04   p_cons 2.728185e-01   p_joint 3.807547e-04

Joint ci ratio: 1.230791e-01	ci left: 3.577377e-04	ci right 4.050152e-04	k: 1013	n:2660000
Cons ci ratio: 3.923978e-03	ci left: 2.722858e-01	ci right 2.733568e-01	k: 725704	n:2660000
KS ci ratio: 1.926425e-01	ci left: 1.406492e-04	ci right 1.709828e-04	k: 413	n:2660000
PDZRN3   2660000 perm   3226 sec   (825 perm/sec)   p_kst 1.552632e-04   p_cons 2.728211e-01   p_joint 3.808271e-04

Joint ci ratio: 1.228974e-01	ci left: 3.574869e-04	ci right 4.046565e-04	k: 1016	n:2670000
Cons ci ratio: 3.916926e-03	ci left: 2.722561e-01	ci right 2.733249e-01	k: 728350	n:2670000
KS ci ratio: 1.926425e-01	ci left: 1.401224e-04	ci right 1.703425e-04	k: 413	n:2670000
PDZRN3   2670000 perm   3246 sec   (822 perm/sec)   p_kst 1.546816e-04   p_cons 2.727903e-01   p_joint 3.805243e-04

Joint ci ratio: 1.224766e-01	ci left: 3.586848e-04	ci right 4.058386e-04	k: 1023	n:2680000
Cons ci ratio: 3.909586e-03	ci left: 2.722597e-01	ci right 2.733266e-01	k: 731085	n:2680000
KS ci ratio: 1.921789e-01	ci left: 1.403099e-04	ci right 1.704890e-04	k: 415	n:2680000
PDZRN3   2680000 perm   3267 sec   (820 perm/sec)   p_kst 1.548507e-04   p_cons 2.727929e-01   p_joint 3.817164e-04

Joint ci ratio: 1.224169e-01	ci left: 3.577117e-04	ci right 4.047130e-04	k: 1024	n:2690000
Cons ci ratio: 3.902352e-03	ci left: 2.722567e-01	ci right 2.733215e-01	k: 733802	n:2690000
KS ci ratio: 1.921789e-01	ci left: 1.397883e-04	ci right 1.698552e-04	k: 415	n:2690000
PDZRN3   2690000 perm   3288 sec   (818 perm/sec)   p_kst 1.542751e-04   p_cons 2.727888e-01   p_joint 3.806691e-04

Joint ci ratio: 1.225966e-01	ci left: 3.553098e-04	ci right 4.020690e-04	k: 1021	n:2700000
Cons ci ratio: 3.895133e-03	ci left: 2.722562e-01	ci right 2.733191e-01	k: 736526	n:2700000
KS ci ratio: 1.919484e-01	ci left: 1.396231e-04	ci right 1.696143e-04	k: 416	n:2700000
PDZRN3   2700000 perm   3310 sec   (816 perm/sec)   p_kst 1.540741e-04   p_cons 2.727874e-01   p_joint 3.781481e-04

Joint ci ratio: 1.222977e-01	ci left: 3.557872e-04	ci right 4.024868e-04	k: 1026	n:2710000
Cons ci ratio: 3.887719e-03	ci left: 2.722797e-01	ci right 2.733407e-01	k: 739315	n:2710000
KS ci ratio: 1.912616e-01	ci left: 1.401618e-04	ci right 1.701485e-04	k: 419	n:2710000
PDZRN3   2710000 perm   3346 sec   (810 perm/sec)   p_kst 1.546125e-04   p_cons 2.728100e-01   p_joint 3.785978e-04

Joint ci ratio: 1.221789e-01	ci left: 3.551919e-04	ci right 4.017649e-04	k: 1028	n:2720000
Cons ci ratio: 3.880440e-03	ci left: 2.722935e-01	ci right 2.733525e-01	k: 742078	n:2720000
KS ci ratio: 1.910343e-01	ci left: 1.399966e-04	ci right 1.699081e-04	k: 420	n:2720000
PDZRN3   2720000 perm   3367 sec   (808 perm/sec)   p_kst 1.544118e-04   p_cons 2.728228e-01   p_joint 3.779412e-04

Joint ci ratio: 1.219421e-01	ci left: 3.553113e-04	ci right 4.018031e-04	k: 1032	n:2730000
Cons ci ratio: 3.873331e-03	ci left: 2.722940e-01	ci right 2.733511e-01	k: 744805	n:2730000
KS ci ratio: 1.905821e-01	ci left: 1.401814e-04	ci right 1.700533e-04	k: 422	n:2730000
PDZRN3   2730000 perm   3389 sec   (806 perm/sec)   p_kst 1.545788e-04   p_cons 2.728223e-01   p_joint 3.780220e-04

Joint ci ratio: 1.217654e-01	ci left: 3.550761e-04	ci right 4.014649e-04	k: 1035	n:2740000
Cons ci ratio: 3.866065e-03	ci left: 2.723146e-01	ci right 2.733698e-01	k: 747587	n:2740000
KS ci ratio: 1.903573e-01	ci left: 1.400173e-04	ci right 1.698150e-04	k: 423	n:2740000
PDZRN3   2740000 perm   3411 sec   (803 perm/sec)   p_kst 1.543796e-04   p_cons 2.728420e-01   p_joint 3.777372e-04

Joint ci ratio: 1.217655e-01	ci left: 3.537849e-04	ci right 4.000051e-04	k: 1035	n:2750000
Cons ci ratio: 3.859109e-03	ci left: 2.723074e-01	ci right 2.733607e-01	k: 750293	n:2750000
KS ci ratio: 1.903573e-01	ci left: 1.395082e-04	ci right 1.691975e-04	k: 423	n:2750000
PDZRN3   2750000 perm   3433 sec   (801 perm/sec)   p_kst 1.538182e-04   p_cons 2.728338e-01   p_joint 3.763636e-04

Joint ci ratio: 1.220014e-01	ci left: 3.510979e-04	ci right 3.970624e-04	k: 1031	n:2760000
Cons ci ratio: 3.852204e-03	ci left: 2.722989e-01	ci right 2.733502e-01	k: 752995	n:2760000
KS ci ratio: 1.899099e-01	ci left: 1.396929e-04	ci right 1.693436e-04	k: 425	n:2760000
PDZRN3   2760000 perm   3455 sec   (799 perm/sec)   p_kst 1.539855e-04   p_cons 2.728243e-01   p_joint 3.735507e-04

Joint ci ratio: 1.220015e-01	ci left: 3.498304e-04	ci right 3.956290e-04	k: 1031	n:2770000
Cons ci ratio: 3.845473e-03	ci left: 2.722763e-01	ci right 2.733257e-01	k: 755658	n:2770000
KS ci ratio: 1.899100e-01	ci left: 1.391886e-04	ci right 1.687322e-04	k: 425	n:2770000
PDZRN3   2770000 perm   3477 sec   (797 perm/sec)   p_kst 1.534296e-04   p_cons 2.728007e-01   p_joint 3.722022e-04

Joint ci ratio: 1.217658e-01	ci left: 3.499670e-04	ci right 3.956885e-04	k: 1035	n:2780000
Cons ci ratio: 3.838648e-03	ci left: 2.722671e-01	ci right 2.733146e-01	k: 758358	n:2780000
KS ci ratio: 1.892447e-01	ci left: 1.397158e-04	ci right 1.692556e-04	k: 428	n:2780000
PDZRN3   2780000 perm   3514 sec   (791 perm/sec)   p_kst 1.539568e-04   p_cons 2.727906e-01   p_joint 3.723022e-04

Joint ci ratio: 1.268265e-01	ci left: 3.205824e-04	ci right 3.643366e-04	k: 954	n:2790000
Cons ci ratio: 3.831575e-03	ci left: 2.722875e-01	ci right 2.733331e-01	k: 761140	n:2790000
KS ci ratio: 1.888051e-01	ci left: 1.398980e-04	ci right 1.693996e-04	k: 430	n:2790000
PDZRN3   2790000 perm   3539 sec   (788 perm/sec)   p_kst 1.541219e-04   p_cons 2.728100e-01   p_joint 3.419355e-04

Joint ci ratio: 1.264957e-01	ci left: 3.211666e-04	ci right 3.648776e-04	k: 959	n:2800000
Cons ci ratio: 3.824971e-03	ci left: 2.722630e-01	ci right 2.733067e-01	k: 763797	n:2800000
KS ci ratio: 1.881514e-01	ci left: 1.404192e-04	ci right 1.699166e-04	k: 433	n:2800000
PDZRN3   2800000 perm   3560 sec   (786 perm/sec)   p_kst 1.546429e-04   p_cons 2.727846e-01   p_joint 3.425000e-04

Joint ci ratio: 1.262986e-01	ci left: 3.210575e-04	ci right 3.646805e-04	k: 962	n:2810000
Cons ci ratio: 3.818255e-03	ci left: 2.722540e-01	ci right 2.732959e-01	k: 766497	n:2810000
KS ci ratio: 1.875044e-01	ci left: 1.409369e-04	ci right 1.704296e-04	k: 436	n:2810000
PDZRN3   2810000 perm   3582 sec   (784 perm/sec)   p_kst 1.551601e-04   p_cons 2.727747e-01   p_joint 3.423488e-04

Joint ci ratio: 1.262331e-01	ci left: 3.202624e-04	ci right 3.637531e-04	k: 963	n:2820000
Cons ci ratio: 3.811461e-03	ci left: 2.722568e-01	ci right 2.732968e-01	k: 769230	n:2820000
KS ci ratio: 1.875045e-01	ci left: 1.404371e-04	ci right 1.698253e-04	k: 436	n:2820000
PDZRN3   2820000 perm   3604 sec   (782 perm/sec)   p_kst 1.546099e-04   p_cons 2.727766e-01   p_joint 3.414894e-04

Joint ci ratio: 1.260371e-01	ci left: 3.201574e-04	ci right 3.635613e-04	k: 966	n:2830000
Cons ci ratio: 3.804778e-03	ci left: 2.722518e-01	ci right 2.732900e-01	k: 771941	n:2830000
KS ci ratio: 1.875045e-01	ci left: 1.399409e-04	ci right 1.692252e-04	k: 436	n:2830000
PDZRN3   2830000 perm   3630 sec   (780 perm/sec)   p_kst 1.540636e-04   p_cons 2.727707e-01   p_joint 3.413428e-04

Joint ci ratio: 1.256479e-01	ci left: 3.210762e-04	ci right 3.644603e-04	k: 972	n:2840000
Cons ci ratio: 3.798079e-03	ci left: 2.722521e-01	ci right 2.732885e-01	k: 774667	n:2840000
KS ci ratio: 1.868642e-01	ci left: 1.404550e-04	ci right 1.697351e-04	k: 439	n:2840000
PDZRN3   2840000 perm   3707 sec   (766 perm/sec)   p_kst 1.545775e-04   p_cons 2.727701e-01   p_joint 3.422535e-04

Joint ci ratio: 1.259071e-01	ci left: 3.185903e-04	ci right 3.617338e-04	k: 968	n:2850000
Cons ci ratio: 3.791624e-03	ci left: 2.722307e-01	ci right 2.732652e-01	k: 777331	n:2850000
KS ci ratio: 1.868642e-01	ci left: 1.399622e-04	ci right 1.691395e-04	k: 439	n:2850000
PDZRN3   2850000 perm   3773 sec   (755 perm/sec)   p_kst 1.540351e-04   p_cons 2.727477e-01   p_joint 3.396491e-04

Joint ci ratio: 1.255835e-01	ci left: 3.191696e-04	ci right 3.622722e-04	k: 973	n:2860000
Cons ci ratio: 3.785184e-03	ci left: 2.722112e-01	ci right 2.732438e-01	k: 780000	n:2860000
KS ci ratio: 1.866522e-01	ci left: 1.398061e-04	ci right 1.689141e-04	k: 440	n:2860000
PDZRN3   2860000 perm   3804 sec   (752 perm/sec)   p_kst 1.538462e-04   p_cons 2.727273e-01   p_joint 3.402098e-04

Joint ci ratio: 1.253905e-01	ci left: 3.190700e-04	ci right 3.620881e-04	k: 976	n:2870000
Cons ci ratio: 3.778628e-03	ci left: 2.722075e-01	ci right 2.732383e-01	k: 782714	n:2870000
KS ci ratio: 1.862304e-01	ci left: 1.399833e-04	ci right 1.690549e-04	k: 442	n:2870000
PDZRN3   2870000 perm   3834 sec   (749 perm/sec)   p_kst 1.540070e-04   p_cons 2.727226e-01   p_joint 3.400697e-04

Joint ci ratio: 1.260375e-01	ci left: 3.145990e-04	ci right 3.572495e-04	k: 966	n:2880000
Cons ci ratio: 3.772073e-03	ci left: 2.722072e-01	ci right 2.732363e-01	k: 785438	n:2880000
KS ci ratio: 1.860206e-01	ci left: 1.398283e-04	ci right 1.688313e-04	k: 443	n:2880000
PDZRN3   2880000 perm   3857 sec   (747 perm/sec)   p_kst 1.538194e-04   p_cons 2.727215e-01   p_joint 3.354167e-04

Joint ci ratio: 1.257776e-01	ci left: 3.148509e-04	ci right 3.574410e-04	k: 970	n:2890000
Cons ci ratio: 3.765552e-03	ci left: 2.722070e-01	ci right 2.732343e-01	k: 788162	n:2890000
KS ci ratio: 1.856030e-01	ci left: 1.400043e-04	ci right 1.689713e-04	k: 445	n:2890000
PDZRN3   2890000 perm   3880 sec   (745 perm/sec)   p_kst 1.539792e-04   p_cons 2.727204e-01   p_joint 3.356401e-04

Joint ci ratio: 1.257130e-01	ci left: 3.140992e-04	ci right 3.565641e-04	k: 971	n:2900000
Cons ci ratio: 3.759061e-03	ci left: 2.722071e-01	ci right 2.732326e-01	k: 790887	n:2900000
KS ci ratio: 1.853953e-01	ci left: 1.398503e-04	ci right 1.687495e-04	k: 446	n:2900000
PDZRN3   2900000 perm   3902 sec   (743 perm/sec)   p_kst 1.537931e-04   p_cons 2.727197e-01   p_joint 3.348276e-04

Joint ci ratio: 1.255839e-01	ci left: 3.136855e-04	ci right 3.560477e-04	k: 973	n:2910000
Cons ci ratio: 3.752549e-03	ci left: 2.722131e-01	ci right 2.732368e-01	k: 793629	n:2910000
KS ci ratio: 1.853954e-01	ci left: 1.393697e-04	ci right 1.681696e-04	k: 446	n:2910000
PDZRN3   2910000 perm   3924 sec   (742 perm/sec)   p_kst 1.532646e-04   p_cons 2.727247e-01   p_joint 3.343643e-04

Joint ci ratio: 1.255195e-01	ci left: 3.129429e-04	ci right 3.551816e-04	k: 974	n:2920000
Cons ci ratio: 3.746176e-03	ci left: 2.722077e-01	ci right 2.732297e-01	k: 796338	n:2920000
KS ci ratio: 1.851884e-01	ci left: 1.392190e-04	ci right 1.679520e-04	k: 447	n:2920000
PDZRN3   2920000 perm   3947 sec   (740 perm/sec)   p_kst 1.530822e-04   p_cons 2.727185e-01   p_joint 3.335616e-04

Joint ci ratio: 1.254552e-01	ci left: 3.122055e-04	ci right 3.543214e-04	k: 975	n:2930000
Cons ci ratio: 3.739663e-03	ci left: 2.722208e-01	ci right 2.732411e-01	k: 799101	n:2930000
KS ci ratio: 1.851884e-01	ci left: 1.387439e-04	ci right 1.673788e-04	k: 447	n:2930000
PDZRN3   2930000 perm   3969 sec   (738 perm/sec)   p_kst 1.525597e-04   p_cons 2.727307e-01   p_joint 3.327645e-04

Joint ci ratio: 1.273623e-01	ci left: 3.015914e-04	ci right 3.429406e-04	k: 946	n:2940000
Cons ci ratio: 3.733340e-03	ci left: 2.722172e-01	ci right 2.732357e-01	k: 801815	n:2940000
KS ci ratio: 1.849821e-01	ci left: 1.385963e-04	ci right 1.671654e-04	k: 448	n:2940000
PDZRN3   2940000 perm   3992 sec   (736 perm/sec)   p_kst 1.523810e-04   p_cons 2.727262e-01   p_joint 3.217687e-04

Joint ci ratio: 1.270942e-01	ci left: 3.018818e-04	ci right 3.431772e-04	k: 950	n:2950000
Cons ci ratio: 3.727075e-03	ci left: 2.722108e-01	ci right 2.732276e-01	k: 804521	n:2950000
KS ci ratio: 1.845714e-01	ci left: 1.387731e-04	ci right 1.673080e-04	k: 450	n:2950000
PDZRN3   2950000 perm   4015 sec   (735 perm/sec)   p_kst 1.525424e-04   p_cons 2.727190e-01   p_joint 3.220339e-04

Joint ci ratio: 1.269608e-01	ci left: 3.015161e-04	ci right 3.427150e-04	k: 952	n:2960000
Cons ci ratio: 3.720597e-03	ci left: 2.722305e-01	ci right 2.732456e-01	k: 807304	n:2960000
KS ci ratio: 1.845715e-01	ci left: 1.383043e-04	ci right 1.667428e-04	k: 450	n:2960000
PDZRN3   2960000 perm   4038 sec   (733 perm/sec)   p_kst 1.520270e-04   p_cons 2.727378e-01   p_joint 3.216216e-04

Joint ci ratio: 1.267614e-01	ci left: 3.014790e-04	ci right 3.426032e-04	k: 955	n:2970000
Cons ci ratio: 3.714260e-03	ci left: 2.722387e-01	ci right 2.732520e-01	k: 810053	n:2970000
KS ci ratio: 1.843672e-01	ci left: 1.381598e-04	ci right 1.665336e-04	k: 451	n:2970000
PDZRN3   2970000 perm   4061 sec   (731 perm/sec)   p_kst 1.518519e-04   p_cons 2.727451e-01   p_joint 3.215488e-04

Joint ci ratio: 1.263654e-01	ci left: 3.024170e-04	ci right 3.435306e-04	k: 961	n:2980000
Cons ci ratio: 3.708231e-03	ci left: 2.722172e-01	ci right 2.732289e-01	k: 812714	n:2980000
KS ci ratio: 1.839607e-01	ci left: 1.383364e-04	ci right 1.666768e-04	k: 453	n:2980000
PDZRN3   2980000 perm   4084 sec   (730 perm/sec)   p_kst 1.520134e-04   p_cons 2.727228e-01   p_joint 3.224832e-04

Joint ci ratio: 1.258432e-01	ci left: 3.039968e-04	ci right 3.451416e-04	k: 969	n:2990000
Cons ci ratio: 3.701954e-03	ci left: 2.722257e-01	ci right 2.732356e-01	k: 815464	n:2990000
KS ci ratio: 1.831555e-01	ci left: 1.391500e-04	ci right 1.675185e-04	k: 457	n:2990000
PDZRN3   2990000 perm   4107 sec   (728 perm/sec)   p_kst 1.528428e-04   p_cons 2.727304e-01   p_joint 3.240803e-04

Joint ci ratio: 1.257137e-01	ci left: 3.036291e-04	ci right 3.446788e-04	k: 971	n:3000000
Cons ci ratio: 3.696140e-03	ci left: 2.721878e-01	ci right 2.731960e-01	k: 818075	n:3000000
KS ci ratio: 1.827569e-01	ci left: 1.393223e-04	ci right 1.676573e-04	k: 459	n:3000000
PDZRN3   3000000 perm   4130 sec   (726 perm/sec)   p_kst 1.530000e-04   p_cons 2.726917e-01   p_joint 3.236667e-04

Joint ci ratio: 1.255846e-01	ci left: 3.032640e-04	ci right 3.442190e-04	k: 973	n:3010000
Cons ci ratio: 3.689982e-03	ci left: 2.721900e-01	ci right 2.731965e-01	k: 820806	n:3010000
KS ci ratio: 1.827569e-01	ci left: 1.388595e-04	ci right 1.671003e-04	k: 459	n:3010000
PDZRN3   3010000 perm   4153 sec   (725 perm/sec)   p_kst 1.524917e-04   p_cons 2.726930e-01   p_joint 3.232558e-04

Joint ci ratio: 1.255202e-01	ci left: 3.025805e-04	ci right 3.434207e-04	k: 974	n:3020000
Cons ci ratio: 3.683757e-03	ci left: 2.722027e-01	ci right 2.732076e-01	k: 823569	n:3020000
KS ci ratio: 1.825586e-01	ci left: 1.387156e-04	ci right 1.668932e-04	k: 460	n:3020000
PDZRN3   3020000 perm   4177 sec   (723 perm/sec)   p_kst 1.523179e-04   p_cons 2.727050e-01   p_joint 3.225166e-04

Joint ci ratio: 1.259084e-01	ci left: 2.996639e-04	ci right 3.402449e-04	k: 968	n:3030000
Cons ci ratio: 3.677472e-03	ci left: 2.722253e-01	ci right 2.732286e-01	k: 826362	n:3030000
KS ci ratio: 1.817717e-01	ci left: 1.395178e-04	ci right 1.677227e-04	k: 464	n:3030000
PDZRN3   3030000 perm   4201 sec   (721 perm/sec)   p_kst 1.531353e-04   p_cons 2.727267e-01   p_joint 3.194719e-04

Joint ci ratio: 1.269613e-01	ci left: 2.935814e-04	ci right 3.336962e-04	k: 952	n:3040000
Cons ci ratio: 3.671255e-03	ci left: 2.722438e-01	ci right 2.732454e-01	k: 829143	n:3040000
KS ci ratio: 1.815765e-01	ci left: 1.393728e-04	ci right 1.675149e-04	k: 465	n:3040000
PDZRN3   3040000 perm   4224 sec   (720 perm/sec)   p_kst 1.529605e-04   p_cons 2.727444e-01   p_joint 3.131579e-04

Joint ci ratio: 1.268948e-01	ci left: 2.929363e-04	ci right 3.329404e-04	k: 953	n:3050000
Cons ci ratio: 3.665248e-03	ci left: 2.722428e-01	ci right 2.732428e-01	k: 831865	n:3050000
KS ci ratio: 1.813820e-01	ci left: 1.392288e-04	ci right 1.673084e-04	k: 466	n:3050000
PDZRN3   3050000 perm   4248 sec   (718 perm/sec)   p_kst 1.527869e-04   p_cons 2.727426e-01   p_joint 3.124590e-04

Joint ci ratio: 1.270949e-01	ci left: 2.910297e-04	ci right 3.308409e-04	k: 950	n:3060000
Cons ci ratio: 3.659104e-03	ci left: 2.722599e-01	ci right 2.732582e-01	k: 834642	n:3060000
KS ci ratio: 1.809949e-01	ci left: 1.393978e-04	ci right 1.674448e-04	k: 468	n:3060000
PDZRN3   3060000 perm   4271 sec   (716 perm/sec)   p_kst 1.529412e-04   p_cons 2.727588e-01   p_joint 3.104575e-04

Joint ci ratio: 1.266297e-01	ci left: 2.922895e-04	ci right 3.321157e-04	k: 957	n:3070000
Cons ci ratio: 3.653334e-03	ci left: 2.722396e-01	ci right 2.732364e-01	k: 837305	n:3070000
KS ci ratio: 1.804187e-01	ci left: 1.398767e-04	ci right 1.679207e-04	k: 471	n:3070000
PDZRN3   3070000 perm   4295 sec   (715 perm/sec)   p_kst 1.534202e-04   p_cons 2.727378e-01   p_joint 3.117264e-04

Joint ci ratio: 1.263661e-01	ci left: 2.925982e-04	ci right 3.323771e-04	k: 961	n:3080000
Cons ci ratio: 3.647671e-03	ci left: 2.722108e-01	ci right 2.732059e-01	k: 839941	n:3080000
KS ci ratio: 1.800377e-01	ci left: 1.400426e-04	ci right 1.680542e-04	k: 473	n:3080000
PDZRN3   3080000 perm   4318 sec   (713 perm/sec)   p_kst 1.535714e-04   p_cons 2.727081e-01   p_joint 3.120130e-04

Joint ci ratio: 1.282469e-01	ci left: 2.828782e-04	ci right 3.219517e-04	k: 933	n:3090000
Cons ci ratio: 3.641812e-03	ci left: 2.722064e-01	ci right 2.731998e-01	k: 842652	n:3090000
KS ci ratio: 1.796590e-01	ci left: 1.402075e-04	ci right 1.681866e-04	k: 475	n:3090000
PDZRN3   3090000 perm   4342 sec   (712 perm/sec)   p_kst 1.537217e-04   p_cons 2.727029e-01   p_joint 3.019417e-04

Joint ci ratio: 1.298563e-01	ci left: 2.747858e-04	ci right 3.132545e-04	k: 910	n:3100000
Cons ci ratio: 3.636025e-03	ci left: 2.721972e-01	ci right 2.731890e-01	k: 845348	n:3100000
KS ci ratio: 1.792828e-01	ci left: 1.403714e-04	ci right 1.683182e-04	k: 477	n:3100000
PDZRN3   3100000 perm   4366 sec   (710 perm/sec)   p_kst 1.538710e-04   p_cons 2.726929e-01   p_joint 2.935484e-04

Joint ci ratio: 1.297851e-01	ci left: 2.742133e-04	ci right 3.125792e-04	k: 911	n:3110000
Cons ci ratio: 3.630371e-03	ci left: 2.721765e-01	ci right 2.731667e-01	k: 848008	n:3110000
KS ci ratio: 1.792828e-01	ci left: 1.399201e-04	ci right 1.677770e-04	k: 477	n:3110000
PDZRN3   3110000 perm   4390 sec   (709 perm/sec)   p_kst 1.533762e-04   p_cons 2.726714e-01   p_joint 2.929260e-04

Joint ci ratio: 1.297141e-01	ci left: 2.736445e-04	ci right 3.119083e-04	k: 912	n:3120000
Cons ci ratio: 3.624448e-03	ci left: 2.721883e-01	ci right 2.731769e-01	k: 850769	n:3120000
KS ci ratio: 1.792829e-01	ci left: 1.394716e-04	ci right 1.672393e-04	k: 477	n:3120000
PDZRN3   3120000 perm   4413 sec   (707 perm/sec)   p_kst 1.528846e-04   p_cons 2.726824e-01   p_joint 2.923077e-04

Joint ci ratio: 1.293603e-01	ci left: 2.743160e-04	ci right 3.125610e-04	k: 917	n:3130000
Cons ci ratio: 3.618537e-03	ci left: 2.722019e-01	ci right 2.731889e-01	k: 853536	n:3130000
KS ci ratio: 1.789090e-01	ci left: 1.396364e-04	ci right 1.673725e-04	k: 479	n:3130000
PDZRN3   3130000 perm   4438 sec   (705 perm/sec)   p_kst 1.530351e-04   p_cons 2.726952e-01   p_joint 2.929712e-04

Joint ci ratio: 1.292196e-01	ci left: 2.740587e-04	ci right 3.122231e-04	k: 919	n:3140000
Cons ci ratio: 3.612802e-03	ci left: 2.721992e-01	ci right 2.731847e-01	k: 856252	n:3140000
KS ci ratio: 1.785374e-01	ci left: 1.398001e-04	ci right 1.675049e-04	k: 481	n:3140000
PDZRN3   3140000 perm   4462 sec   (704 perm/sec)   p_kst 1.531847e-04   p_cons 2.726917e-01   p_joint 2.926752e-04

Joint ci ratio: 1.290794e-01	ci left: 2.738031e-04	ci right 3.118873e-04	k: 921	n:3150000
Cons ci ratio: 3.606861e-03	ci left: 2.722222e-01	ci right 2.732061e-01	k: 859049	n:3150000
KS ci ratio: 1.785374e-01	ci left: 1.393563e-04	ci right 1.669732e-04	k: 481	n:3150000
PDZRN3   3150000 perm   4486 sec   (702 perm/sec)   p_kst 1.526984e-04   p_cons 2.727140e-01   p_joint 2.923810e-04

Joint ci ratio: 1.286614e-01	ci left: 2.747741e-04	ci right 3.128602e-04	k: 927	n:3160000
Cons ci ratio: 3.601204e-03	ci left: 2.722169e-01	ci right 2.731993e-01	k: 861757	n:3160000
KS ci ratio: 1.781681e-01	ci left: 1.395200e-04	ci right 1.671059e-04	k: 483	n:3160000
PDZRN3   3160000 perm   4510 sec   (701 perm/sec)   p_kst 1.528481e-04   p_cons 2.727079e-01   p_joint 2.933544e-04

Joint ci ratio: 1.290096e-01	ci left: 2.723809e-04	ci right 3.102452e-04	k: 922	n:3170000
Cons ci ratio: 3.595640e-03	ci left: 2.722044e-01	ci right 2.731852e-01	k: 864442	n:3170000
KS ci ratio: 1.781682e-01	ci left: 1.390798e-04	ci right 1.665788e-04	k: 483	n:3170000
PDZRN3   3170000 perm   4534 sec   (699 perm/sec)   p_kst 1.523659e-04   p_cons 2.726946e-01   p_joint 2.908517e-04

Joint ci ratio: 1.285922e-01	ci left: 2.733503e-04	ci right 3.112172e-04	k: 928	n:3180000
Cons ci ratio: 3.590169e-03	ci left: 2.721845e-01	ci right 2.731637e-01	k: 867103	n:3180000
KS ci ratio: 1.778012e-01	ci left: 1.392434e-04	ci right 1.667118e-04	k: 485	n:3180000
PDZRN3   3180000 perm   4558 sec   (698 perm/sec)   p_kst 1.525157e-04   p_cons 2.726739e-01   p_joint 2.918239e-04

Joint ci ratio: 1.285923e-01	ci left: 2.724934e-04	ci right 3.102416e-04	k: 928	n:3190000
Cons ci ratio: 3.584387e-03	ci left: 2.722019e-01	ci right 2.731797e-01	k: 869883	n:3190000
KS ci ratio: 1.778012e-01	ci left: 1.388069e-04	ci right 1.661892e-04	k: 485	n:3190000
PDZRN3   3190000 perm   4582 sec   (696 perm/sec)   p_kst 1.520376e-04   p_cons 2.726906e-01   p_joint 2.909091e-04

Joint ci ratio: 1.282476e-01	ci left: 2.731542e-04	ci right 3.108847e-04	k: 933	n:3200000
Cons ci ratio: 3.578627e-03	ci left: 2.722199e-01	ci right 2.731961e-01	k: 872665	n:3200000
KS ci ratio: 1.770740e-01	ci left: 1.395676e-04	ci right 1.669753e-04	k: 489	n:3200000
PDZRN3   3200000 perm   4607 sec   (695 perm/sec)   p_kst 1.528125e-04   p_cons 2.727078e-01   p_joint 2.915625e-04

Joint ci ratio: 1.300713e-01	ci left: 2.644652e-04	ci right 3.015551e-04	k: 907	n:3210000
Cons ci ratio: 3.572919e-03	ci left: 2.722350e-01	ci right 2.732097e-01	k: 875438	n:3210000
KS ci ratio: 1.765343e-01	ci left: 1.400260e-04	ci right 1.674311e-04	k: 492	n:3210000
PDZRN3   3210000 perm   4632 sec   (693 perm/sec)   p_kst 1.532710e-04   p_cons 2.727221e-01   p_joint 2.825545e-04

Joint ci ratio: 1.299998e-01	ci left: 2.639443e-04	ci right 3.009392e-04	k: 908	n:3220000
Cons ci ratio: 3.567407e-03	ci left: 2.722313e-01	ci right 2.732045e-01	k: 878151	n:3220000
KS ci ratio: 1.761773e-01	ci left: 1.401849e-04	ci right 1.675596e-04	k: 494	n:3220000
PDZRN3   3220000 perm   4656 sec   (692 perm/sec)   p_kst 1.534161e-04   p_cons 2.727177e-01   p_joint 2.819876e-04

Joint ci ratio: 1.299284e-01	ci left: 2.634267e-04	ci right 3.003272e-04	k: 909	n:3230000
Cons ci ratio: 3.561764e-03	ci left: 2.722450e-01	ci right 2.732167e-01	k: 880920	n:3230000
KS ci ratio: 1.759997e-01	ci left: 1.400468e-04	ci right 1.673641e-04	k: 495	n:3230000
PDZRN3   3230000 perm   4681 sec   (690 perm/sec)   p_kst 1.532508e-04   p_cons 2.727307e-01   p_joint 2.814241e-04

Joint ci ratio: 1.295729e-01	ci left: 2.641067e-04	ci right 3.009935e-04	k: 914	n:3240000
Cons ci ratio: 3.556192e-03	ci left: 2.722537e-01	ci right 2.732239e-01	k: 883673	n:3240000
KS ci ratio: 1.756459e-01	ci left: 1.402047e-04	ci right 1.674919e-04	k: 497	n:3240000
PDZRN3   3240000 perm   4706 sec   (688 perm/sec)   p_kst 1.533951e-04   p_cons 2.727386e-01   p_joint 2.820988e-04

Joint ci ratio: 1.292203e-01	ci left: 2.647828e-04	ci right 3.016556e-04	k: 919	n:3250000
Cons ci ratio: 3.550732e-03	ci left: 2.722528e-01	ci right 2.732215e-01	k: 886395	n:3250000
KS ci ratio: 1.754698e-01	ci left: 1.400675e-04	ci right 1.672978e-04	k: 498	n:3250000
PDZRN3   3250000 perm   4731 sec   (687 perm/sec)   p_kst 1.532308e-04   p_cons 2.727369e-01   p_joint 2.827692e-04

Joint ci ratio: 1.295730e-01	ci left: 2.624864e-04	ci right 2.991470e-04	k: 914	n:3260000
Cons ci ratio: 3.545230e-03	ci left: 2.722592e-01	ci right 2.732265e-01	k: 889141	n:3260000
KS ci ratio: 1.751192e-01	ci left: 1.402244e-04	ci right 1.674250e-04	k: 500	n:3260000
PDZRN3   3260000 perm   4756 sec   (685 perm/sec)   p_kst 1.533742e-04   p_cons 2.727426e-01   p_joint 2.803681e-04

Joint ci ratio: 1.295023e-01	ci left: 2.619796e-04	ci right 2.985479e-04	k: 915	n:3270000
Cons ci ratio: 3.539965e-03	ci left: 2.722421e-01	ci right 2.732078e-01	k: 891810	n:3270000
KS ci ratio: 1.749447e-01	ci left: 1.400880e-04	ci right 1.672322e-04	k: 501	n:3270000
PDZRN3   3270000 perm   4780 sec   (684 perm/sec)   p_kst 1.532110e-04   p_cons 2.727248e-01   p_joint 2.798165e-04

Joint ci ratio: 1.303593e-01	ci left: 2.576412e-04	ci right 2.938603e-04	k: 903	n:3280000
Cons ci ratio: 3.534581e-03	ci left: 2.722409e-01	ci right 2.732052e-01	k: 894531	n:3280000
KS ci ratio: 1.744243e-01	ci left: 1.405355e-04	ci right 1.676769e-04	k: 504	n:3280000
PDZRN3   3280000 perm   4806 sec   (683 perm/sec)   p_kst 1.536585e-04   p_cons 2.727229e-01   p_joint 2.753049e-04

Joint ci ratio: 1.302153e-01	ci left: 2.574462e-04	ci right 2.935948e-04	k: 905	n:3290000
Cons ci ratio: 3.529228e-03	ci left: 2.722392e-01	ci right 2.732020e-01	k: 897250	n:3290000
KS ci ratio: 1.740799e-01	ci left: 1.406898e-04	ci right 1.678016e-04	k: 506	n:3290000
PDZRN3   3290000 perm   4831 sec   (681 perm/sec)   p_kst 1.537994e-04   p_cons 2.727204e-01   p_joint 2.750760e-04

Joint ci ratio: 1.300003e-01	ci left: 2.575456e-04	ci right 2.936438e-04	k: 908	n:3300000
Cons ci ratio: 3.523611e-03	ci left: 2.722698e-01	ci right 2.732312e-01	k: 900076	n:3300000
KS ci ratio: 1.737375e-01	ci left: 1.408431e-04	ci right 1.679256e-04	k: 508	n:3300000
PDZRN3   3300000 perm   4857 sec   (679 perm/sec)   p_kst 1.539394e-04   p_cons 2.727503e-01   p_joint 2.751515e-04

Joint ci ratio: 1.299289e-01	ci left: 2.570598e-04	ci right 2.930686e-04	k: 909	n:3310000
Cons ci ratio: 3.518344e-03	ci left: 2.722638e-01	ci right 2.732236e-01	k: 902781	n:3310000
KS ci ratio: 1.733972e-01	ci left: 1.409956e-04	ci right 1.680487e-04	k: 510	n:3310000
PDZRN3   3310000 perm   4881 sec   (678 perm/sec)   p_kst 1.540785e-04   p_cons 2.727435e-01   p_joint 2.746224e-04

Joint ci ratio: 1.296442e-01	ci left: 2.574512e-04	ci right 2.934298e-04	k: 913	n:3320000
Cons ci ratio: 3.513133e-03	ci left: 2.722541e-01	ci right 2.732125e-01	k: 905474	n:3320000
KS ci ratio: 1.732278e-01	ci left: 1.408590e-04	ci right 1.678568e-04	k: 511	n:3320000
PDZRN3   3320000 perm   4906 sec   (677 perm/sec)   p_kst 1.539157e-04   p_cons 2.727331e-01   p_joint 2.750000e-04

Joint ci ratio: 1.293614e-01	ci left: 2.578404e-04	ci right 2.937887e-04	k: 917	n:3330000
Cons ci ratio: 3.507890e-03	ci left: 2.722508e-01	ci right 2.732078e-01	k: 908188	n:3330000
KS ci ratio: 1.728904e-01	ci left: 1.410106e-04	ci right 1.679793e-04	k: 513	n:3330000
PDZRN3   3330000 perm   4931 sec   (675 perm/sec)   p_kst 1.540541e-04   p_cons 2.727291e-01   p_joint 2.753754e-04

Joint ci ratio: 1.292911e-01	ci left: 2.573581e-04	ci right 2.932182e-04	k: 918	n:3340000
Cons ci ratio: 3.502590e-03	ci left: 2.722565e-01	ci right 2.732121e-01	k: 910932	n:3340000
KS ci ratio: 1.728905e-01	ci left: 1.405884e-04	ci right 1.674764e-04	k: 513	n:3340000
PDZRN3   3340000 perm   4957 sec   (674 perm/sec)   p_kst 1.535928e-04   p_cons 2.727341e-01   p_joint 2.748503e-04

Joint ci ratio: 1.290805e-01	ci left: 2.574565e-04	ci right 2.932674e-04	k: 921	n:3350000
Cons ci ratio: 3.497312e-03	ci left: 2.722625e-01	ci right 2.732167e-01	k: 913677	n:3350000
KS ci ratio: 1.723881e-01	ci left: 1.410256e-04	ci right 1.679106e-04	k: 516	n:3350000
PDZRN3   3350000 perm   4983 sec   (672 perm/sec)   p_kst 1.540299e-04   p_cons 2.727394e-01   p_joint 2.749254e-04

Joint ci ratio: 1.290806e-01	ci left: 2.566902e-04	ci right 2.923945e-04	k: 921	n:3360000
Cons ci ratio: 3.492244e-03	ci left: 2.722474e-01	ci right 2.732001e-01	k: 916351	n:3360000
KS ci ratio: 1.722216e-01	ci left: 1.408907e-04	ci right 1.677213e-04	k: 517	n:3360000
PDZRN3   3360000 perm   5008 sec   (671 perm/sec)   p_kst 1.538690e-04   p_cons 2.727235e-01   p_joint 2.741071e-04

Joint ci ratio: 1.287320e-01	ci left: 2.573644e-04	ci right 2.930584e-04	k: 926	n:3370000
Cons ci ratio: 3.487005e-03	ci left: 2.722542e-01	ci right 2.732055e-01	k: 919099	n:3370000
KS ci ratio: 1.720556e-01	ci left: 1.407565e-04	ci right 1.675331e-04	k: 518	n:3370000
PDZRN3   3370000 perm   5034 sec   (670 perm/sec)   p_kst 1.537092e-04   p_cons 2.727297e-01   p_joint 2.747774e-04

Joint ci ratio: 1.288015e-01	ci left: 2.563166e-04	ci right 2.918860e-04	k: 925	n:3380000
Cons ci ratio: 3.481789e-03	ci left: 2.722610e-01	ci right 2.732109e-01	k: 921847	n:3380000
KS ci ratio: 1.717251e-01	ci left: 1.409064e-04	ci right 1.676546e-04	k: 520	n:3380000
PDZRN3   3380000 perm   5059 sec   (668 perm/sec)   p_kst 1.538462e-04   p_cons 2.727358e-01   p_joint 2.736686e-04

Joint ci ratio: 1.287321e-01	ci left: 2.558460e-04	ci right 2.913295e-04	k: 926	n:3390000
Cons ci ratio: 3.476687e-03	ci left: 2.722575e-01	ci right 2.732060e-01	k: 924560	n:3390000
KS ci ratio: 1.717251e-01	ci left: 1.404907e-04	ci right 1.671601e-04	k: 520	n:3390000
PDZRN3   3390000 perm   5085 sec   (667 perm/sec)   p_kst 1.533923e-04   p_cons 2.727316e-01   p_joint 2.731563e-04

Joint ci ratio: 1.287321e-01	ci left: 2.550935e-04	ci right 2.904726e-04	k: 926	n:3400000
Cons ci ratio: 3.471360e-03	ci left: 2.722822e-01	ci right 2.732293e-01	k: 927369	n:3400000
KS ci ratio: 1.717251e-01	ci left: 1.400775e-04	ci right 1.666684e-04	k: 520	n:3400000
PDZRN3   3400000 perm   5110 sec   (665 perm/sec)   p_kst 1.529412e-04   p_cons 2.727556e-01   p_joint 2.723529e-04

Joint ci ratio: 1.285935e-01	ci left: 2.549131e-04	ci right 2.902262e-04	k: 928	n:3410000
Cons ci ratio: 3.466409e-03	ci left: 2.722666e-01	ci right 2.732123e-01	k: 930041	n:3410000
KS ci ratio: 1.713965e-01	ci left: 1.402280e-04	ci right 1.667913e-04	k: 522	n:3410000
PDZRN3   3410000 perm   5136 sec   (664 perm/sec)   p_kst 1.530792e-04   p_cons 2.727393e-01   p_joint 2.721408e-04

Joint ci ratio: 1.285244e-01	ci left: 2.544507e-04	ci right 2.896793e-04	k: 929	n:3420000
Cons ci ratio: 3.461435e-03	ci left: 2.722561e-01	ci right 2.732004e-01	k: 932730	n:3420000
KS ci ratio: 1.713965e-01	ci left: 1.398180e-04	ci right 1.663036e-04	k: 522	n:3420000
PDZRN3   3420000 perm   5162 sec   (663 perm/sec)   p_kst 1.526316e-04   p_cons 2.727281e-01   p_joint 2.716374e-04

Joint ci ratio: 1.281117e-01	ci left: 2.554020e-04	ci right 2.906402e-04	k: 935	n:3430000
Cons ci ratio: 3.456439e-03	ci left: 2.722506e-01	ci right 2.731935e-01	k: 935436	n:3430000
KS ci ratio: 1.709070e-01	ci left: 1.402476e-04	ci right 1.667308e-04	k: 525	n:3430000
PDZRN3   3430000 perm   5188 sec   (661 perm/sec)   p_kst 1.530612e-04   p_cons 2.727219e-01   p_joint 2.725948e-04

Joint ci ratio: 1.279751e-01	ci left: 2.552223e-04	ci right 2.903953e-04	k: 937	n:3440000
Cons ci ratio: 3.451362e-03	ci left: 2.722570e-01	ci right 2.731986e-01	k: 938183	n:3440000
KS ci ratio: 1.709070e-01	ci left: 1.398399e-04	ci right 1.662462e-04	k: 525	n:3440000
PDZRN3   3440000 perm   5214 sec   (660 perm/sec)   p_kst 1.526163e-04   p_cons 2.727276e-01   p_joint 2.723837e-04

Joint ci ratio: 1.279069e-01	ci left: 2.547631e-04	ci right 2.898527e-04	k: 938	n:3450000
Cons ci ratio: 3.446191e-03	ci left: 2.722768e-01	ci right 2.732170e-01	k: 940976	n:3450000
KS ci ratio: 1.705830e-01	ci left: 1.399895e-04	ci right 1.663687e-04	k: 527	n:3450000
PDZRN3   3450000 perm   5241 sec   (658 perm/sec)   p_kst 1.527536e-04   p_cons 2.727467e-01   p_joint 2.718841e-04

Joint ci ratio: 1.274328e-01	ci left: 2.559853e-04	ci right 2.911027e-04	k: 945	n:3460000
Cons ci ratio: 3.441236e-03	ci left: 2.722741e-01	ci right 2.732130e-01	k: 943692	n:3460000
KS ci ratio: 1.699405e-01	ci left: 1.406917e-04	ci right 1.670932e-04	k: 531	n:3460000
PDZRN3   3460000 perm   5267 sec   (657 perm/sec)   p_kst 1.534682e-04   p_cons 2.727434e-01   p_joint 2.731214e-04

Joint ci ratio: 1.272983e-01	ci left: 2.558056e-04	ci right 2.908585e-04	k: 947	n:3470000
Cons ci ratio: 3.436482e-03	ci left: 2.722508e-01	ci right 2.731882e-01	k: 946336	n:3470000
KS ci ratio: 1.697810e-01	ci left: 1.405622e-04	ci right 1.669121e-04	k: 532	n:3470000
PDZRN3   3470000 perm   5293 sec   (656 perm/sec)   p_kst 1.533141e-04   p_cons 2.727193e-01   p_joint 2.729107e-04

Joint ci ratio: 1.271642e-01	ci left: 2.556270e-04	ci right 2.906157e-04	k: 949	n:3480000
Cons ci ratio: 3.431532e-03	ci left: 2.722525e-01	ci right 2.731887e-01	k: 949067	n:3480000
KS ci ratio: 1.697810e-01	ci left: 1.401582e-04	ci right 1.664325e-04	k: 532	n:3480000
PDZRN3   3480000 perm   5319 sec   (654 perm/sec)   p_kst 1.528736e-04   p_cons 2.727204e-01   p_joint 2.727011e-04

Joint ci ratio: 1.270974e-01	ci left: 2.551719e-04	ci right 2.900786e-04	k: 950	n:3490000
Cons ci ratio: 3.426645e-03	ci left: 2.722494e-01	ci right 2.731842e-01	k: 951781	n:3490000
KS ci ratio: 1.694634e-01	ci left: 1.403054e-04	ci right 1.665529e-04	k: 534	n:3490000
PDZRN3   3490000 perm   5346 sec   (653 perm/sec)   p_kst 1.530086e-04   p_cons 2.727166e-01   p_joint 2.722063e-04

Joint ci ratio: 1.270306e-01	ci left: 2.547195e-04	ci right 2.895446e-04	k: 951	n:3500000
Cons ci ratio: 3.421815e-03	ci left: 2.722420e-01	ci right 2.731755e-01	k: 954480	n:3500000
KS ci ratio: 1.691475e-01	ci left: 1.404517e-04	ci right 1.666727e-04	k: 536	n:3500000
PDZRN3   3500000 perm   5372 sec   (651 perm/sec)   p_kst 1.531429e-04   p_cons 2.727086e-01   p_joint 2.717143e-04

Joint ci ratio: 1.266983e-01	ci left: 2.553731e-04	ci right 2.901894e-04	k: 956	n:3510000
Cons ci ratio: 3.417036e-03	ci left: 2.722313e-01	ci right 2.731634e-01	k: 957167	n:3510000
KS ci ratio: 1.688334e-01	ci left: 1.405973e-04	ci right 1.667917e-04	k: 538	n:3510000
PDZRN3   3510000 perm   5399 sec   (650 perm/sec)   p_kst 1.532764e-04   p_cons 2.726972e-01   p_joint 2.723647e-04

Joint ci ratio: 1.265002e-01	ci left: 2.554729e-04	ci right 2.902442e-04	k: 959	n:3520000
Cons ci ratio: 3.412247e-03	ci left: 2.722240e-01	ci right 2.731548e-01	k: 959866	n:3520000
KS ci ratio: 1.686770e-01	ci left: 1.404700e-04	ci right 1.666140e-04	k: 539	n:3520000
PDZRN3   3520000 perm   5425 sec   (649 perm/sec)   p_kst 1.531250e-04   p_cons 2.726892e-01   p_joint 2.724432e-04

Joint ci ratio: 1.264344e-01	ci left: 2.550235e-04	ci right 2.897143e-04	k: 960	n:3530000
Cons ci ratio: 3.407308e-03	ci left: 2.722366e-01	ci right 2.731660e-01	k: 962635	n:3530000
KS ci ratio: 1.685210e-01	ci left: 1.403434e-04	ci right 1.664372e-04	k: 540	n:3530000
PDZRN3   3530000 perm   5452 sec   (647 perm/sec)   p_kst 1.529745e-04   p_cons 2.727011e-01   p_joint 2.719547e-04

Joint ci ratio: 1.262375e-01	ci left: 2.551237e-04	ci right 2.897701e-04	k: 963	n:3540000
Cons ci ratio: 3.402470e-03	ci left: 2.722398e-01	ci right 2.731679e-01	k: 965371	n:3540000
KS ci ratio: 1.683655e-01	ci left: 1.402175e-04	ci right 1.662614e-04	k: 541	n:3540000
PDZRN3   3540000 perm   5479 sec   (646 perm/sec)   p_kst 1.528249e-04   p_cons 2.727037e-01   p_joint 2.720339e-04

Joint ci ratio: 1.262375e-01	ci left: 2.544051e-04	ci right 2.889538e-04	k: 963	n:3550000
Cons ci ratio: 3.397798e-03	ci left: 2.722261e-01	ci right 2.731529e-01	k: 968047	n:3550000
KS ci ratio: 1.683655e-01	ci left: 1.398225e-04	ci right 1.657931e-04	k: 541	n:3550000
PDZRN3   3550000 perm   5505 sec   (645 perm/sec)   p_kst 1.523944e-04   p_cons 2.726893e-01   p_joint 2.712676e-04

Joint ci ratio: 1.261068e-01	ci left: 2.542345e-04	ci right 2.887217e-04	k: 965	n:3560000
Cons ci ratio: 3.393135e-03	ci left: 2.722136e-01	ci right 2.731391e-01	k: 970727	n:3560000
KS ci ratio: 1.682104e-01	ci left: 1.396988e-04	ci right 1.656201e-04	k: 542	n:3560000
PDZRN3   3560000 perm   5533 sec   (643 perm/sec)   p_kst 1.522472e-04   p_cons 2.726761e-01   p_joint 2.710674e-04

Joint ci ratio: 1.259114e-01	ci left: 2.543362e-04	ci right 2.887798e-04	k: 968	n:3570000
Cons ci ratio: 3.388386e-03	ci left: 2.722134e-01	ci right 2.731376e-01	k: 973451	n:3570000
KS ci ratio: 1.680558e-01	ci left: 1.395758e-04	ci right 1.654480e-04	k: 543	n:3570000
PDZRN3   3570000 perm   5559 sec   (642 perm/sec)   p_kst 1.521008e-04   p_cons 2.726754e-01   p_joint 2.711485e-04

Joint ci ratio: 1.255878e-01	ci left: 2.549785e-04	ci right 2.894137e-04	k: 973	n:3580000
Cons ci ratio: 3.383707e-03	ci left: 2.722075e-01	ci right 2.731303e-01	k: 976154	n:3580000
KS ci ratio: 1.680558e-01	ci left: 1.391859e-04	ci right 1.649859e-04	k: 543	n:3580000
PDZRN3   3580000 perm   5586 sec   (641 perm/sec)   p_kst 1.516760e-04   p_cons 2.726687e-01   p_joint 2.717877e-04

Joint ci ratio: 1.252666e-01	ci left: 2.556173e-04	ci right 2.900439e-04	k: 978	n:3590000
Cons ci ratio: 3.378952e-03	ci left: 2.722126e-01	ci right 2.731342e-01	k: 978897	n:3590000
KS ci ratio: 1.677477e-01	ci left: 1.393319e-04	ci right 1.651068e-04	k: 545	n:3590000
PDZRN3   3590000 perm   5613 sec   (640 perm/sec)   p_kst 1.518106e-04   p_cons 2.726733e-01   p_joint 2.724234e-04

Joint ci ratio: 1.248845e-01	ci left: 2.565218e-04	ci right 2.909570e-04	k: 984	n:3600000
Cons ci ratio: 3.374411e-03	ci left: 2.721950e-01	ci right 2.731153e-01	k: 981558	n:3600000
KS ci ratio: 1.674413e-01	ci left: 1.394772e-04	ci right 1.652270e-04	k: 547	n:3600000
PDZRN3   3600000 perm   5641 sec   (638 perm/sec)   p_kst 1.519444e-04   p_cons 2.726550e-01   p_joint 2.733333e-04

Joint ci ratio: 1.255235e-01	ci left: 2.531279e-04	ci right 2.872943e-04	k: 974	n:3610000
Cons ci ratio: 3.369688e-03	ci left: 2.722010e-01	ci right 2.731201e-01	k: 984304	n:3610000
KS ci ratio: 1.669848e-01	ci left: 1.398870e-04	ci right 1.656351e-04	k: 550	n:3610000
PDZRN3   3610000 perm   5668 sec   (637 perm/sec)   p_kst 1.523546e-04   p_cons 2.726604e-01   p_joint 2.698061e-04

Joint ci ratio: 1.254592e-01	ci left: 2.526962e-04	ci right 2.867856e-04	k: 975	n:3620000
Cons ci ratio: 3.365021e-03	ci left: 2.722029e-01	ci right 2.731207e-01	k: 987035	n:3620000
KS ci ratio: 1.669849e-01	ci left: 1.395006e-04	ci right 1.651776e-04	k: 550	n:3620000
PDZRN3   3620000 perm   5695 sec   (636 perm/sec)   p_kst 1.519337e-04   p_cons 2.726616e-01   p_joint 2.693370e-04

Joint ci ratio: 1.251390e-01	ci left: 2.533343e-04	ci right 2.874161e-04	k: 980	n:3630000
Cons ci ratio: 3.360298e-03	ci left: 2.722135e-01	ci right 2.731301e-01	k: 989798	n:3630000
KS ci ratio: 1.663820e-01	ci left: 1.401723e-04	ci right 1.658704e-04	k: 554	n:3630000
PDZRN3   3630000 perm   5723 sec   (634 perm/sec)   p_kst 1.526171e-04   p_cons 2.726716e-01   p_joint 2.699725e-04

Joint ci ratio: 1.250117e-01	ci left: 2.531706e-04	ci right 2.871931e-04	k: 982	n:3640000
Cons ci ratio: 3.355564e-03	ci left: 2.722277e-01	ci right 2.731430e-01	k: 992574	n:3640000
KS ci ratio: 1.660830e-01	ci left: 1.403138e-04	ci right 1.659870e-04	k: 556	n:3640000
PDZRN3   3640000 perm   5750 sec   (633 perm/sec)   p_kst 1.527473e-04   p_cons 2.726852e-01   p_joint 2.697802e-04

Joint ci ratio: 1.249482e-01	ci left: 2.527424e-04	ci right 2.866888e-04	k: 983	n:3650000
Cons ci ratio: 3.351059e-03	ci left: 2.722172e-01	ci right 2.731312e-01	k: 995260	n:3650000
KS ci ratio: 1.657856e-01	ci left: 1.404545e-04	ci right 1.661029e-04	k: 558	n:3650000
PDZRN3   3650000 perm   5777 sec   (632 perm/sec)   p_kst 1.528767e-04   p_cons 2.726740e-01   p_joint 2.693151e-04

Joint ci ratio: 1.246950e-01	ci left: 2.531106e-04	ci right 2.870325e-04	k: 987	n:3660000
Cons ci ratio: 3.346496e-03	ci left: 2.722157e-01	ci right 2.731284e-01	k: 997979	n:3660000
KS ci ratio: 1.654898e-01	ci left: 1.405946e-04	ci right 1.662181e-04	k: 560	n:3660000
PDZRN3   3660000 perm   5805 sec   (631 perm/sec)   p_kst 1.530055e-04   p_cons 2.726719e-01   p_joint 2.696721e-04

Joint ci ratio: 1.245690e-01	ci left: 2.529489e-04	ci right 2.868123e-04	k: 989	n:3670000
Cons ci ratio: 3.342100e-03	ci left: 2.721965e-01	ci right 2.731080e-01	k: 1000633	n:3670000
KS ci ratio: 1.653425e-01	ci left: 1.404727e-04	ci right 1.660490e-04	k: 561	n:3670000
PDZRN3   3670000 perm   5832 sec   (629 perm/sec)   p_kst 1.528610e-04   p_cons 2.726520e-01   p_joint 2.694823e-04

Joint ci ratio: 1.244433e-01	ci left: 2.527881e-04	ci right 2.865934e-04	k: 991	n:3680000
Cons ci ratio: 3.337342e-03	ci left: 2.722225e-01	ci right 2.731328e-01	k: 1003453	n:3680000
KS ci ratio: 1.651956e-01	ci left: 1.403515e-04	ci right 1.658807e-04	k: 562	n:3680000
PDZRN3   3680000 perm   5861 sec   (628 perm/sec)   p_kst 1.527174e-04   p_cons 2.726774e-01   p_joint 2.692935e-04

Joint ci ratio: 1.241932e-01	ci left: 2.531533e-04	ci right 2.869344e-04	k: 995	n:3690000
Cons ci ratio: 3.332726e-03	ci left: 2.722340e-01	ci right 2.731431e-01	k: 1006220	n:3690000
KS ci ratio: 1.651957e-01	ci left: 1.399711e-04	ci right 1.654312e-04	k: 562	n:3690000
PDZRN3   3690000 perm   5888 sec   (627 perm/sec)   p_kst 1.523035e-04   p_cons 2.726883e-01   p_joint 2.696477e-04

Joint ci ratio: 1.240687e-01	ci left: 2.529929e-04	ci right 2.867162e-04	k: 997	n:3700000
Cons ci ratio: 3.328135e-03	ci left: 2.722446e-01	ci right 2.731525e-01	k: 1008984	n:3700000
KS ci ratio: 1.650492e-01	ci left: 1.398519e-04	ci right 1.652655e-04	k: 563	n:3700000
PDZRN3   3700000 perm   5916 sec   (625 perm/sec)   p_kst 1.521622e-04   p_cons 2.726984e-01   p_joint 2.694595e-04

Joint ci ratio: 1.239446e-01	ci left: 2.528333e-04	ci right 2.864992e-04	k: 999	n:3710000
Cons ci ratio: 3.323680e-03	ci left: 2.722412e-01	ci right 2.731478e-01	k: 1011696	n:3710000
KS ci ratio: 1.649031e-01	ci left: 1.397334e-04	ci right 1.651007e-04	k: 564	n:3710000
PDZRN3   3710000 perm   5943 sec   (624 perm/sec)   p_kst 1.520216e-04   p_cons 2.726943e-01   p_joint 2.692722e-04

Joint ci ratio: 1.238208e-01	ci left: 2.526746e-04	ci right 2.862833e-04	k: 1001	n:3720000
Cons ci ratio: 3.319111e-03	ci left: 2.722537e-01	ci right 2.731591e-01	k: 1014467	n:3720000
KS ci ratio: 1.647573e-01	ci left: 1.396155e-04	ci right 1.649368e-04	k: 565	n:3720000
PDZRN3   3720000 perm   5971 sec   (623 perm/sec)   p_kst 1.518817e-04   p_cons 2.727062e-01   p_joint 2.690860e-04

Joint ci ratio: 1.236359e-01	ci left: 2.527766e-04	ci right 2.863450e-04	k: 1004	n:3730000
Cons ci ratio: 3.314903e-03	ci left: 2.722250e-01	ci right 2.731292e-01	k: 1017085	n:3730000
KS ci ratio: 1.644670e-01	ci left: 1.397553e-04	ci right 1.650529e-04	k: 567	n:3730000
PDZRN3   3730000 perm   5999 sec   (622 perm/sec)   p_kst 1.520107e-04   p_cons 2.726769e-01   p_joint 2.691689e-04

Joint ci ratio: 1.235130e-01	ci left: 2.526190e-04	ci right 2.861306e-04	k: 1006	n:3740000
Cons ci ratio: 3.310412e-03	ci left: 2.722324e-01	ci right 2.731353e-01	k: 1019837	n:3740000
KS ci ratio: 1.643224e-01	ci left: 1.396380e-04	ci right 1.648899e-04	k: 568	n:3740000
PDZRN3   3740000 perm   6027 sec   (621 perm/sec)   p_kst 1.518717e-04   p_cons 2.726837e-01   p_joint 2.689840e-04

Joint ci ratio: 1.233906e-01	ci left: 2.524622e-04	ci right 2.859174e-04	k: 1008	n:3750000
Cons ci ratio: 3.306193e-03	ci left: 2.722093e-01	ci right 2.731110e-01	k: 1022475	n:3750000
KS ci ratio: 1.641782e-01	ci left: 1.395213e-04	ci right 1.647278e-04	k: 569	n:3750000
PDZRN3   3750000 perm   6055 sec   (619 perm/sec)   p_kst 1.517333e-04   p_cons 2.726600e-01   p_joint 2.688000e-04

Joint ci ratio: 1.230253e-01	ci left: 2.533373e-04	ci right 2.868019e-04	k: 1014	n:3760000
Cons ci ratio: 3.301719e-03	ci left: 2.722188e-01	ci right 2.731193e-01	k: 1025235	n:3760000
KS ci ratio: 1.634628e-01	ci left: 1.404255e-04	ci right 1.656740e-04	k: 574	n:3760000
PDZRN3   3760000 perm   6084 sec   (618 perm/sec)   p_kst 1.526596e-04   p_cons 2.726689e-01   p_joint 2.696809e-04

Joint ci ratio: 1.229647e-01	ci left: 2.529224e-04	ci right 2.863145e-04	k: 1015	n:3770000
Cons ci ratio: 3.297233e-03	ci left: 2.722319e-01	ci right 2.731313e-01	k: 1028009	n:3770000
KS ci ratio: 1.633208e-01	ci left: 1.403074e-04	ci right 1.655106e-04	k: 575	n:3770000
PDZRN3   3770000 perm   6112 sec   (617 perm/sec)   p_kst 1.525199e-04   p_cons 2.726814e-01   p_joint 2.692308e-04

Joint ci ratio: 1.231468e-01	ci left: 2.514841e-04	ci right 2.847390e-04	k: 1012	n:3780000
Cons ci ratio: 3.292802e-03	ci left: 2.722405e-01	ci right 2.731387e-01	k: 1030766	n:3780000
KS ci ratio: 1.630380e-01	ci left: 1.404438e-04	ci right 1.656234e-04	k: 577	n:3780000
PDZRN3   3780000 perm   6140 sec   (616 perm/sec)   p_kst 1.526455e-04   p_cons 2.726894e-01   p_joint 2.677249e-04

Joint ci ratio: 1.231468e-01	ci left: 2.508205e-04	ci right 2.839878e-04	k: 1012	n:3790000
Cons ci ratio: 3.288429e-03	ci left: 2.722443e-01	ci right 2.731413e-01	k: 1033505	n:3790000
KS ci ratio: 1.628972e-01	ci left: 1.403263e-04	ci right 1.654610e-04	k: 578	n:3790000
PDZRN3   3790000 perm   6168 sec   (614 perm/sec)   p_kst 1.525066e-04   p_cons 2.726926e-01   p_joint 2.670185e-04

Joint ci ratio: 1.231469e-01	ci left: 2.501605e-04	ci right 2.832404e-04	k: 1012	n:3800000
Cons ci ratio: 3.284230e-03	ci left: 2.722291e-01	ci right 2.731249e-01	k: 1036172	n:3800000
KS ci ratio: 1.627567e-01	ci left: 1.402094e-04	ci right 1.652995e-04	k: 579	n:3800000
PDZRN3   3800000 perm   6197 sec   (613 perm/sec)   p_kst 1.523684e-04   p_cons 2.726768e-01   p_joint 2.663158e-04

Joint ci ratio: 1.229649e-01	ci left: 2.502670e-04	ci right 2.833086e-04	k: 1015	n:3810000
Cons ci ratio: 3.279992e-03	ci left: 2.722206e-01	ci right 2.731152e-01	k: 1038864	n:3810000
KS ci ratio: 1.627567e-01	ci left: 1.398414e-04	ci right 1.648656e-04	k: 579	n:3810000
PDZRN3   3810000 perm   6226 sec   (612 perm/sec)   p_kst 1.519685e-04   p_cons 2.726677e-01   p_joint 2.664042e-04

Joint ci ratio: 1.226634e-01	ci left: 2.508806e-04	ci right 2.839161e-04	k: 1020	n:3820000
Cons ci ratio: 3.275735e-03	ci left: 2.722166e-01	ci right 2.731100e-01	k: 1041573	n:3820000
KS ci ratio: 1.624768e-01	ci left: 1.399776e-04	ci right 1.649789e-04	k: 581	n:3820000
PDZRN3   3820000 perm   6254 sec   (611 perm/sec)   p_kst 1.520942e-04   p_cons 2.726631e-01   p_joint 2.670157e-04

Joint ci ratio: 1.226635e-01	ci left: 2.502255e-04	ci right 2.831748e-04	k: 1020	n:3830000
Cons ci ratio: 3.271493e-03	ci left: 2.722125e-01	ci right 2.731048e-01	k: 1044282	n:3830000
KS ci ratio: 1.624769e-01	ci left: 1.396121e-04	ci right 1.645481e-04	k: 581	n:3830000
PDZRN3   3830000 perm   6283 sec   (610 perm/sec)   p_kst 1.516971e-04   p_cons 2.726585e-01   p_joint 2.663185e-04

Joint ci ratio: 1.140015e-01	ci left: 2.902620e-04	ci right 3.256028e-04	k: 1181	n:3840000
Cons ci ratio: 3.267442e-03	ci left: 2.721875e-01	ci right 2.730785e-01	k: 1046910	n:3840000
KS ci ratio: 1.620597e-01	ci left: 1.399981e-04	ci right 1.649326e-04	k: 584	n:3840000
PDZRN3   3840000 perm   6312 sec   (608 perm/sec)   p_kst 1.520833e-04   p_cons 2.726328e-01   p_joint 3.075521e-04

Joint ci ratio: 1.136653e-01	ci left: 2.912745e-04	ci right 3.266270e-04	k: 1188	n:3850000
Cons ci ratio: 3.263126e-03	ci left: 2.721965e-01	ci right 2.730864e-01	k: 1049669	n:3850000
KS ci ratio: 1.617834e-01	ci left: 1.401329e-04	ci right 1.650447e-04	k: 586	n:3850000
PDZRN3   3850000 perm   6340 sec   (607 perm/sec)   p_kst 1.522078e-04   p_cons 2.726413e-01   p_joint 3.085714e-04

Joint ci ratio: 1.135699e-01	ci left: 2.910233e-04	ci right 3.263137e-04	k: 1190	n:3860000
Cons ci ratio: 3.258919e-03	ci left: 2.721944e-01	ci right 2.730831e-01	k: 1052385	n:3860000
KS ci ratio: 1.616457e-01	ci left: 1.400184e-04	ci right 1.648867e-04	k: 587	n:3860000
PDZRN3   3860000 perm   6370 sec   (606 perm/sec)   p_kst 1.520725e-04   p_cons 2.726386e-01   p_joint 3.082902e-04

Joint ci ratio: 1.133322e-01	ci left: 2.915266e-04	ci right 3.267991e-04	k: 1195	n:3870000
Cons ci ratio: 3.254951e-03	ci left: 2.721652e-01	ci right 2.730527e-01	k: 1054996	n:3870000
KS ci ratio: 1.613715e-01	ci left: 1.401525e-04	ci right 1.649983e-04	k: 589	n:3870000
PDZRN3   3870000 perm   6398 sec   (605 perm/sec)   p_kst 1.521964e-04   p_cons 2.726088e-01   p_joint 3.087855e-04

Joint ci ratio: 1.130489e-01	ci left: 2.922779e-04	ci right 3.275470e-04	k: 1201	n:3880000
Cons ci ratio: 3.250610e-03	ci left: 2.721832e-01	ci right 2.730697e-01	k: 1057790	n:3880000
KS ci ratio: 1.606920e-01	ci left: 1.410281e-04	ci right 1.659135e-04	k: 594	n:3880000
PDZRN3   3880000 perm   6427 sec   (604 perm/sec)   p_kst 1.530928e-04   p_cons 2.726263e-01   p_joint 3.095361e-04

Joint ci ratio: 1.128145e-01	ci left: 2.927756e-04	ci right 3.280266e-04	k: 1206	n:3890000
Cons ci ratio: 3.246440e-03	ci left: 2.721825e-01	ci right 2.730678e-01	k: 1060511	n:3890000
KS ci ratio: 1.604226e-01	ci left: 1.411590e-04	ci right 1.660218e-04	k: 596	n:3890000
PDZRN3   3890000 perm   6456 sec   (603 perm/sec)   p_kst 1.532134e-04   p_cons 2.726249e-01   p_joint 3.100257e-04

Joint ci ratio: 1.125815e-01	ci left: 2.932708e-04	ci right 3.285037e-04	k: 1211	n:3900000
Cons ci ratio: 3.242261e-03	ci left: 2.721848e-01	ci right 2.730689e-01	k: 1063244	n:3900000
KS ci ratio: 1.598878e-01	ci left: 1.417816e-04	ci right 1.666628e-04	k: 600	n:3900000
PDZRN3   3900000 perm   6485 sec   (601 perm/sec)   p_kst 1.538462e-04   p_cons 2.726267e-01   p_joint 3.105128e-04

Joint ci ratio: 1.122117e-01	ci left: 2.945093e-04	ci right 3.297670e-04	k: 1219	n:3910000
Cons ci ratio: 3.238341e-03	ci left: 2.721574e-01	ci right 2.730404e-01	k: 1065861	n:3910000
KS ci ratio: 1.594902e-01	ci left: 1.421556e-04	ci right 1.670345e-04	k: 603	n:3910000
PDZRN3   3910000 perm   6514 sec   (600 perm/sec)   p_kst 1.542199e-04   p_cons 2.725987e-01   p_joint 3.117647e-04

Joint ci ratio: 1.118456e-01	ci left: 2.957416e-04	ci right 3.310238e-04	k: 1227	n:3920000
Cons ci ratio: 3.234160e-03	ci left: 2.721638e-01	ci right 2.730457e-01	k: 1068610	n:3920000
KS ci ratio: 1.589646e-01	ci left: 1.427727e-04	ci right 1.676694e-04	k: 607	n:3920000
PDZRN3   3920000 perm   6543 sec   (599 perm/sec)   p_kst 1.548469e-04   p_cons 2.726046e-01   p_joint 3.130102e-04

Joint ci ratio: 1.115733e-01	ci left: 2.964732e-04	ci right 3.317508e-04	k: 1233	n:3930000
Cons ci ratio: 3.229951e-03	ci left: 2.721756e-01	ci right 2.730563e-01	k: 1071380	n:3930000
KS ci ratio: 1.588341e-01	ci left: 1.426537e-04	ci right 1.675073e-04	k: 608	n:3930000
PDZRN3   3930000 perm   6573 sec   (598 perm/sec)   p_kst 1.547074e-04   p_cons 2.726158e-01   p_joint 3.137405e-04

Joint ci ratio: 1.114830e-01	ci left: 2.962141e-04	ci right 3.314306e-04	k: 1235	n:3940000
Cons ci ratio: 3.225926e-03	ci left: 2.721667e-01	ci right 2.730463e-01	k: 1074069	n:3940000
KS ci ratio: 1.587039e-01	ci left: 1.425354e-04	ci right 1.673460e-04	k: 609	n:3940000
PDZRN3   3940000 perm   6602 sec   (597 perm/sec)   p_kst 1.545685e-04   p_cons 2.726063e-01   p_joint 3.134518e-04

Joint ci ratio: 1.131906e-01	ci left: 2.863602e-04	ci right 3.209615e-04	k: 1198	n:3950000
Cons ci ratio: 3.221797e-03	ci left: 2.721725e-01	ci right 2.730511e-01	k: 1076816	n:3950000
KS ci ratio: 1.584443e-01	ci left: 1.426608e-04	ci right 1.674488e-04	k: 611	n:3950000
PDZRN3   3950000 perm   6631 sec   (596 perm/sec)   p_kst 1.546835e-04   p_cons 2.726116e-01   p_joint 3.032911e-04

Joint ci ratio: 1.131435e-01	ci left: 2.858825e-04	ci right 3.204106e-04	k: 1199	n:3960000
Cons ci ratio: 3.217711e-03	ci left: 2.721751e-01	ci right 2.730525e-01	k: 1079550	n:3960000
KS ci ratio: 1.583150e-01	ci left: 1.425430e-04	ci right 1.672885e-04	k: 612	n:3960000
PDZRN3   3960000 perm   6661 sec   (595 perm/sec)   p_kst 1.545455e-04   p_cons 2.726136e-01   p_joint 3.027778e-04

Joint ci ratio: 1.130493e-01	ci left: 2.856519e-04	ci right 3.201216e-04	k: 1201	n:3970000
Cons ci ratio: 3.213715e-03	ci left: 2.721683e-01	ci right 2.730446e-01	k: 1082247	n:3970000
KS ci ratio: 1.580574e-01	ci left: 1.426678e-04	ci right 1.673908e-04	k: 614	n:3970000
PDZRN3   3970000 perm   6691 sec   (593 perm/sec)   p_kst 1.546599e-04   p_cons 2.726063e-01   p_joint 3.025189e-04

Joint ci ratio: 1.129554e-01	ci left: 2.854225e-04	ci right 3.198340e-04	k: 1203	n:3980000
Cons ci ratio: 3.209569e-03	ci left: 2.721819e-01	ci right 2.730571e-01	k: 1085025	n:3980000
KS ci ratio: 1.579291e-01	ci left: 1.425507e-04	ci right 1.672314e-04	k: 615	n:3980000
PDZRN3   3980000 perm   6721 sec   (592 perm/sec)   p_kst 1.545226e-04   p_cons 2.726193e-01   p_joint 3.022613e-04

Joint ci ratio: 1.128617e-01	ci left: 2.851942e-04	ci right 3.195478e-04	k: 1205	n:3990000
Cons ci ratio: 3.205519e-03	ci left: 2.721857e-01	ci right 2.730598e-01	k: 1087764	n:3990000
KS ci ratio: 1.578010e-01	ci left: 1.424342e-04	ci right 1.670728e-04	k: 616	n:3990000
PDZRN3   3990000 perm   6750 sec   (591 perm/sec)   p_kst 1.543860e-04   p_cons 2.726226e-01   p_joint 3.020050e-04

Joint ci ratio: 1.127216e-01	ci left: 2.852101e-04	ci right 3.195201e-04	k: 1208	n:4000000
Cons ci ratio: 3.201552e-03	ci left: 2.721809e-01	ci right 2.730539e-01	k: 1090469	n:4000000
KS ci ratio: 1.576733e-01	ci left: 1.423182e-04	ci right 1.669150e-04	k: 617	n:4000000
PDZRN3   4000000 perm   6781 sec   (590 perm/sec)   p_kst 1.542500e-04   p_cons 2.726172e-01   p_joint 3.020000e-04

Joint ci ratio: 1.126285e-01	ci left: 2.849835e-04	ci right 3.192361e-04	k: 1210	n:4010000
Cons ci ratio: 3.197625e-03	ci left: 2.721732e-01	ci right 2.730451e-01	k: 1093162	n:4010000
KS ci ratio: 1.575459e-01	ci left: 1.422028e-04	ci right 1.667579e-04	k: 618	n:4010000
PDZRN3   4010000 perm   6810 sec   (589 perm/sec)   p_kst 1.541147e-04   p_cons 2.726090e-01   p_joint 3.017456e-04

Joint ci ratio: 1.124893e-01	ci left: 2.849999e-04	ci right 3.192092e-04	k: 1213	n:4020000
Cons ci ratio: 3.193541e-03	ci left: 2.721866e-01	ci right 2.730575e-01	k: 1095940	n:4020000
KS ci ratio: 1.575460e-01	ci left: 1.418491e-04	ci right 1.663431e-04	k: 618	n:4020000
PDZRN3   4020000 perm   6840 sec   (588 perm/sec)   p_kst 1.537313e-04   p_cons 2.726219e-01   p_joint 3.017413e-04

Joint ci ratio: 1.122123e-01	ci left: 2.857397e-04	ci right 3.199478e-04	k: 1219	n:4030000
Cons ci ratio: 3.189563e-03	ci left: 2.721888e-01	ci right 2.730586e-01	k: 1098673	n:4030000
KS ci ratio: 1.570393e-01	ci left: 1.424506e-04	ci right 1.669619e-04	k: 622	n:4030000
PDZRN3   4030000 perm   6870 sec   (587 perm/sec)   p_kst 1.543424e-04   p_cons 2.726236e-01   p_joint 3.024814e-04

Joint ci ratio: 1.041914e-01	ci left: 3.319957e-04	ci right 3.687266e-04	k: 1414	n:4040000
Cons ci ratio: 3.185552e-03	ci left: 2.721970e-01	ci right 2.730657e-01	k: 1101430	n:4040000
KS ci ratio: 1.567879e-01	ci left: 1.425736e-04	ci right 1.670631e-04	k: 624	n:4040000
PDZRN3   4040000 perm   6900 sec   (586 perm/sec)   p_kst 1.544554e-04   p_cons 2.726312e-01   p_joint 3.500000e-04

Joint ci ratio: 1.040077e-01	ci left: 3.323784e-04	ci right 3.690829e-04	k: 1419	n:4050000
Cons ci ratio: 3.181629e-03	ci left: 2.721960e-01	ci right 2.730636e-01	k: 1104150	n:4050000
KS ci ratio: 1.565376e-01	ci left: 1.426960e-04	ci right 1.671638e-04	k: 626	n:4050000
PDZRN3   4050000 perm   6930 sec   (584 perm/sec)   p_kst 1.545679e-04   p_cons 2.726296e-01   p_joint 3.503704e-04

Joint ci ratio: 1.038251e-01	ci left: 3.327593e-04	ci right 3.694373e-04	k: 1424	n:4060000
Cons ci ratio: 3.177638e-03	ci left: 2.722053e-01	ci right 2.730719e-01	k: 1106912	n:4060000
KS ci ratio: 1.560406e-01	ci left: 1.432913e-04	ci right 1.677758e-04	k: 630	n:4060000
PDZRN3   4060000 perm   6960 sec   (583 perm/sec)   p_kst 1.551724e-04   p_cons 2.726384e-01   p_joint 3.507389e-04

Joint ci ratio: 9.299718e-02	ci left: 4.160671e-04	ci right 4.568849e-04	k: 1775	n:4070000
Cons ci ratio: 3.173742e-03	ci left: 2.722045e-01	ci right 2.730700e-01	k: 1109633	n:4070000
KS ci ratio: 1.557939e-01	ci left: 1.434114e-04	ci right 1.678741e-04	k: 632	n:4070000
PDZRN3   4070000 perm   6990 sec   (582 perm/sec)   p_kst 1.552826e-04   p_cons 2.726371e-01   p_joint 4.361179e-04

Joint ci ratio: 9.297104e-02	ci left: 4.152867e-04	ci right 4.560159e-04	k: 1776	n:4080000
Cons ci ratio: 3.169961e-03	ci left: 2.721912e-01	ci right 2.730557e-01	k: 1112303	n:4080000
KS ci ratio: 1.556710e-01	ci left: 1.432955e-04	ci right 1.677173e-04	k: 633	n:4080000
PDZRN3   4080000 perm   7020 sec   (581 perm/sec)   p_kst 1.551471e-04   p_cons 2.726233e-01   p_joint 4.352941e-04

Joint ci ratio: 9.286659e-02	ci left: 4.152266e-04	ci right 4.559017e-04	k: 1780	n:4090000
Cons ci ratio: 3.165932e-03	ci left: 2.722108e-01	ci right 2.730742e-01	k: 1115107	n:4090000
KS ci ratio: 1.555484e-01	ci left: 1.431801e-04	ci right 1.675612e-04	k: 634	n:4090000
PDZRN3   4090000 perm   7051 sec   (580 perm/sec)   p_kst 1.550122e-04   p_cons 2.726423e-01   p_joint 4.352078e-04

Joint ci ratio: 9.271053e-02	ci left: 4.156434e-04	ci right 4.562871e-04	k: 1786	n:4100000
Cons ci ratio: 3.162308e-03	ci left: 2.721812e-01	ci right 2.730435e-01	k: 1117710	n:4100000
KS ci ratio: 1.554260e-01	ci left: 1.430653e-04	ci right 1.674059e-04	k: 635	n:4100000
PDZRN3   4100000 perm   7081 sec   (579 perm/sec)   p_kst 1.548780e-04   p_cons 2.726122e-01   p_joint 4.356098e-04

Joint ci ratio: 9.258109e-02	ci left: 4.158204e-04	ci right 4.564216e-04	k: 1791	n:4110000
Cons ci ratio: 3.158310e-03	ci left: 2.722004e-01	ci right 2.730617e-01	k: 1120513	n:4110000
KS ci ratio: 1.550607e-01	ci left: 1.434188e-04	ci right 1.677569e-04	k: 638	n:4110000
PDZRN3   4110000 perm   7112 sec   (578 perm/sec)   p_kst 1.552311e-04   p_cons 2.726309e-01   p_joint 4.357664e-04

Joint ci ratio: 9.276258e-02	ci left: 4.131515e-04	ci right 4.535754e-04	k: 1784	n:4120000
Cons ci ratio: 3.154410e-03	ci left: 2.722091e-01	ci right 2.730694e-01	k: 1123273	n:4120000
KS ci ratio: 1.549396e-01	ci left: 1.433040e-04	ci right 1.676018e-04	k: 639	n:4120000
PDZRN3   4120000 perm   7143 sec   (577 perm/sec)   p_kst 1.550971e-04   p_cons 2.726391e-01   p_joint 4.330097e-04

Joint ci ratio: 9.268474e-02	ci left: 4.128606e-04	ci right 4.532204e-04	k: 1787	n:4130000
Cons ci ratio: 3.150639e-03	ci left: 2.722033e-01	ci right 2.730624e-01	k: 1125973	n:4130000
KS ci ratio: 1.546980e-01	ci left: 1.434225e-04	ci right 1.676990e-04	k: 641	n:4130000
PDZRN3   4130000 perm   7173 sec   (576 perm/sec)   p_kst 1.552058e-04   p_cons 2.726327e-01   p_joint 4.326877e-04

Joint ci ratio: 9.302372e-02	ci left: 4.087962e-04	ci right 4.489128e-04	k: 1774	n:4140000
Cons ci ratio: 3.146917e-03	ci left: 2.721931e-01	ci right 2.730512e-01	k: 1128655	n:4140000
KS ci ratio: 1.546980e-01	ci left: 1.430761e-04	ci right 1.672940e-04	k: 641	n:4140000
PDZRN3   4140000 perm   7204 sec   (575 perm/sec)   p_kst 1.548309e-04   p_cons 2.726220e-01   p_joint 4.285024e-04

Joint ci ratio: 9.307625e-02	ci left: 4.073404e-04	ci right 4.473379e-04	k: 1772	n:4150000
Cons ci ratio: 3.143240e-03	ci left: 2.721788e-01	ci right 2.730359e-01	k: 1131320	n:4150000
KS ci ratio: 1.543378e-01	ci left: 1.434263e-04	ci right 1.676417e-04	k: 644	n:4150000
PDZRN3   4150000 perm   7235 sec   (574 perm/sec)   p_kst 1.551807e-04   p_cons 2.726072e-01   p_joint 4.269880e-04

Joint ci ratio: 9.299761e-02	ci left: 4.070656e-04	ci right 4.470005e-04	k: 1775	n:4160000
Cons ci ratio: 3.139407e-03	ci left: 2.721861e-01	ci right 2.730421e-01	k: 1134074	n:4160000
KS ci ratio: 1.540991e-01	ci left: 1.435437e-04	ci right 1.677380e-04	k: 646	n:4160000
PDZRN3   4160000 perm   7266 sec   (573 perm/sec)   p_kst 1.552885e-04   p_cons 2.726139e-01   p_joint 4.266827e-04

Joint ci ratio: 9.382043e-02	ci left: 3.988289e-04	ci right 4.383210e-04	k: 1744	n:4170000
Cons ci ratio: 3.135767e-03	ci left: 2.721705e-01	ci right 2.730255e-01	k: 1136733	n:4170000
KS ci ratio: 1.539802e-01	ci left: 1.434300e-04	ci right 1.675848e-04	k: 647	n:4170000
PDZRN3   4170000 perm   7297 sec   (571 perm/sec)   p_kst 1.551559e-04   p_cons 2.725978e-01   p_joint 4.182254e-04

Joint ci ratio: 9.371308e-02	ci left: 3.988093e-04	ci right 4.382518e-04	k: 1748	n:4180000
Cons ci ratio: 3.131952e-03	ci left: 2.721789e-01	ci right 2.730329e-01	k: 1139492	n:4180000
KS ci ratio: 1.538615e-01	ci left: 1.433169e-04	ci right 1.674323e-04	k: 648	n:4180000
PDZRN3   4180000 perm   7328 sec   (570 perm/sec)   p_kst 1.550239e-04   p_cons 2.726057e-01   p_joint 4.181818e-04

Joint ci ratio: 9.360611e-02	ci left: 3.987898e-04	ci right 4.381828e-04	k: 1752	n:4190000
Cons ci ratio: 3.128299e-03	ci left: 2.721684e-01	ci right 2.730214e-01	k: 1142172	n:4190000
KS ci ratio: 1.536250e-01	ci left: 1.434338e-04	ci right 1.675284e-04	k: 650	n:4190000
PDZRN3   4190000 perm   7359 sec   (569 perm/sec)   p_kst 1.551313e-04   p_cons 2.725947e-01   p_joint 4.181384e-04

Joint ci ratio: 9.339320e-02	ci left: 3.997005e-04	ci right 4.390888e-04	k: 1760	n:4200000
Cons ci ratio: 3.124514e-03	ci left: 2.721763e-01	ci right 2.730283e-01	k: 1144929	n:4200000
KS ci ratio: 1.529218e-01	ci left: 1.444661e-04	ci right 1.686128e-04	k: 656	n:4200000
PDZRN3   4200000 perm   7390 sec   (568 perm/sec)   p_kst 1.561905e-04   p_cons 2.726021e-01   p_joint 4.190476e-04

Joint ci ratio: 9.315541e-02	ci left: 4.008390e-04	ci right 4.402334e-04	k: 1769	n:4210000
Cons ci ratio: 3.120613e-03	ci left: 2.722008e-01	ci right 2.730518e-01	k: 1147756	n:4210000
KS ci ratio: 1.524583e-01	ci left: 1.450368e-04	ci right 1.691987e-04	k: 660	n:4210000
PDZRN3   4210000 perm   7422 sec   (567 perm/sec)   p_kst 1.567696e-04   p_cons 2.726261e-01   p_joint 4.201900e-04

Joint ci ratio: 9.310285e-02	ci left: 4.003521e-04	ci right 4.396752e-04	k: 1771	n:4220000
Cons ci ratio: 3.116975e-03	ci left: 2.721934e-01	ci right 2.730434e-01	k: 1150449	n:4220000
KS ci ratio: 1.523432e-01	ci left: 1.449210e-04	ci right 1.690437e-04	k: 661	n:4220000
PDZRN3   4220000 perm   7453 sec   (566 perm/sec)   p_kst 1.566351e-04   p_cons 2.726182e-01   p_joint 4.196682e-04

Joint ci ratio: 9.297176e-02	ci left: 4.005601e-04	ci right 4.398453e-04	k: 1776	n:4230000
Cons ci ratio: 3.113302e-03	ci left: 2.721922e-01	ci right 2.730412e-01	k: 1153168	n:4230000
KS ci ratio: 1.522282e-01	ci left: 1.448058e-04	ci right 1.688895e-04	k: 662	n:4230000
PDZRN3   4230000 perm   7485 sec   (565 perm/sec)   p_kst 1.565012e-04   p_cons 2.726165e-01   p_joint 4.198582e-04

Joint ci ratio: 9.291951e-02	ci left: 4.000761e-04	ci right 4.392906e-04	k: 1778	n:4240000
Cons ci ratio: 3.109778e-03	ci left: 2.721736e-01	ci right 2.730215e-01	k: 1155813	n:4240000
KS ci ratio: 1.521136e-01	ci left: 1.446912e-04	ci right 1.687360e-04	k: 663	n:4240000
PDZRN3   4240000 perm   7517 sec   (564 perm/sec)   p_kst 1.563679e-04   p_cons 2.725974e-01   p_joint 4.193396e-04

Joint ci ratio: 9.273721e-02	ci left: 4.007436e-04	ci right 4.399423e-04	k: 1785	n:4250000
Cons ci ratio: 3.106125e-03	ci left: 2.721732e-01	ci right 2.730201e-01	k: 1158535	n:4250000
KS ci ratio: 1.518850e-01	ci left: 1.448034e-04	ci right 1.688275e-04	k: 665	n:4250000
PDZRN3   4250000 perm   7548 sec   (563 perm/sec)   p_kst 1.564706e-04   p_cons 2.725965e-01   p_joint 4.200000e-04

Joint ci ratio: 9.265943e-02	ci left: 4.004908e-04	ci right 4.396301e-04	k: 1788	n:4260000
Cons ci ratio: 3.102462e-03	ci left: 2.721755e-01	ci right 2.730215e-01	k: 1161269	n:4260000
KS ci ratio: 1.517711e-01	ci left: 1.446893e-04	ci right 1.686748e-04	k: 666	n:4260000
PDZRN3   4260000 perm   7580 sec   (562 perm/sec)   p_kst 1.563380e-04   p_cons 2.725984e-01   p_joint 4.197183e-04

Joint ci ratio: 9.260771e-02	ci left: 4.000104e-04	ci right 4.390797e-04	k: 1790	n:4270000
Cons ci ratio: 3.098785e-03	ci left: 2.721814e-01	ci right 2.730264e-01	k: 1164018	n:4270000
KS ci ratio: 1.516575e-01	ci left: 1.445758e-04	ci right 1.685229e-04	k: 667	n:4270000
PDZRN3   4270000 perm   7612 sec   (561 perm/sec)   p_kst 1.562061e-04   p_cons 2.726037e-01   p_joint 4.192037e-04

Joint ci ratio: 9.237584e-02	ci left: 4.011300e-04	ci right 4.402053e-04	k: 1799	n:4280000
Cons ci ratio: 3.095397e-03	ci left: 2.721520e-01	ci right 2.729960e-01	k: 1166616	n:4280000
KS ci ratio: 1.514309e-01	ci left: 1.446875e-04	ci right 1.686141e-04	k: 669	n:4280000
PDZRN3   4280000 perm   7644 sec   (560 perm/sec)   p_kst 1.563084e-04   p_cons 2.725738e-01   p_joint 4.203271e-04

Joint ci ratio: 9.229897e-02	ci left: 4.008781e-04	ci right 4.398946e-04	k: 1802	n:4290000
Cons ci ratio: 3.091875e-03	ci left: 2.721412e-01	ci right 2.729841e-01	k: 1169293	n:4290000
KS ci ratio: 1.513181e-01	ci left: 1.445745e-04	ci right 1.684630e-04	k: 670	n:4290000
PDZRN3   4290000 perm   7676 sec   (559 perm/sec)   p_kst 1.561772e-04   p_cons 2.725625e-01   p_joint 4.200466e-04

Joint ci ratio: 9.224785e-02	ci left: 4.004002e-04	ci right 4.393474e-04	k: 1804	n:4300000
Cons ci ratio: 3.088391e-03	ci left: 2.721271e-01	ci right 2.729690e-01	k: 1171956	n:4300000
KS ci ratio: 1.513181e-01	ci left: 1.442383e-04	ci right 1.680712e-04	k: 670	n:4300000
PDZRN3   4300000 perm   7708 sec   (558 perm/sec)   p_kst 1.558140e-04   p_cons 2.725479e-01   p_joint 4.195349e-04

Joint ci ratio: 9.357996e-02	ci left: 3.879131e-04	ci right 4.262204e-04	k: 1753	n:4310000
Cons ci ratio: 3.084795e-03	ci left: 2.721291e-01	ci right 2.729701e-01	k: 1174688	n:4310000
KS ci ratio: 1.510931e-01	ci left: 1.443501e-04	ci right 1.681628e-04	k: 672	n:4310000
PDZRN3   4310000 perm   7740 sec   (557 perm/sec)   p_kst 1.559165e-04   p_cons 2.725494e-01   p_joint 4.067285e-04

Joint ci ratio: 9.363342e-02	ci left: 3.865630e-04	ci right 4.247600e-04	k: 1751	n:4320000
Cons ci ratio: 3.081265e-03	ci left: 2.721241e-01	ci right 2.729641e-01	k: 1177390	n:4320000
KS ci ratio: 1.508691e-01	ci left: 1.444615e-04	ci right 1.682540e-04	k: 674	n:4320000
PDZRN3   4320000 perm   7772 sec   (556 perm/sec)   p_kst 1.560185e-04   p_cons 2.725440e-01   p_joint 4.053241e-04

Joint ci ratio: 9.347348e-02	ci left: 3.870235e-04	ci right 4.251971e-04	k: 1757	n:4330000
Cons ci ratio: 3.077770e-03	ci left: 2.721162e-01	ci right 2.729552e-01	k: 1180079	n:4330000
KS ci ratio: 1.507574e-01	ci left: 1.443501e-04	ci right 1.681051e-04	k: 675	n:4330000
PDZRN3   4330000 perm   7805 sec   (555 perm/sec)   p_kst 1.558891e-04   p_cons 2.725356e-01   p_joint 4.057737e-04

Joint ci ratio: 9.342037e-02	ci left: 3.865818e-04	ci right 4.246890e-04	k: 1759	n:4340000
Cons ci ratio: 3.074251e-03	ci left: 2.721129e-01	ci right 2.729510e-01	k: 1182788	n:4340000
KS ci ratio: 1.507575e-01	ci left: 1.440175e-04	ci right 1.677178e-04	k: 675	n:4340000
PDZRN3   4340000 perm   7838 sec   (554 perm/sec)   p_kst 1.555300e-04   p_cons 2.725318e-01   p_joint 4.052995e-04

Joint ci ratio: 9.339388e-02	ci left: 3.859176e-04	ci right 4.239480e-04	k: 1760	n:4350000
Cons ci ratio: 3.070732e-03	ci left: 2.721113e-01	ci right 2.729483e-01	k: 1185504	n:4350000
KS ci ratio: 1.507575e-01	ci left: 1.436864e-04	ci right 1.673322e-04	k: 675	n:4350000
PDZRN3   4350000 perm   7871 sec   (553 perm/sec)   p_kst 1.551724e-04   p_cons 2.725297e-01   p_joint 4.045977e-04

Joint ci ratio: 9.328799e-02	ci left: 3.859285e-04	ci right 4.239144e-04	k: 1764	n:4360000
Cons ci ratio: 3.067112e-03	ci left: 2.721243e-01	ci right 2.729604e-01	k: 1188284	n:4360000
KS ci ratio: 1.505350e-01	ci left: 1.437983e-04	ci right 1.674244e-04	k: 677	n:4360000
PDZRN3   4360000 perm   7903 sec   (552 perm/sec)   p_kst 1.552752e-04   p_cons 2.725422e-01   p_joint 4.045872e-04

Joint ci ratio: 9.307725e-02	ci left: 3.868334e-04	ci right 4.248177e-04	k: 1772	n:4370000
Cons ci ratio: 3.063518e-03	ci left: 2.721354e-01	ci right 2.729706e-01	k: 1191056	n:4370000
KS ci ratio: 1.499829e-01	ci left: 1.445704e-04	ci right 1.682284e-04	k: 682	n:4370000
PDZRN3   4370000 perm   7937 sec   (551 perm/sec)   p_kst 1.560641e-04   p_cons 2.725529e-01   p_joint 4.054920e-04

Joint ci ratio: 9.289402e-02	ci left: 3.875112e-04	ci right 4.254831e-04	k: 1779	n:4380000
Cons ci ratio: 3.060030e-03	ci left: 2.721344e-01	ci right 2.729686e-01	k: 1193775	n:4380000
KS ci ratio: 1.496546e-01	ci left: 1.448996e-04	ci right 1.685549e-04	k: 685	n:4380000
PDZRN3   4380000 perm   7970 sec   (550 perm/sec)   p_kst 1.563927e-04   p_cons 2.725514e-01   p_joint 4.061644e-04

Joint ci ratio: 9.276381e-02	ci left: 3.877410e-04	ci right 4.256793e-04	k: 1784	n:4390000
Cons ci ratio: 3.056556e-03	ci left: 2.721332e-01	ci right 2.729664e-01	k: 1196493	n:4390000
KS ci ratio: 1.493284e-01	ci left: 1.452273e-04	ci right 1.688799e-04	k: 688	n:4390000
PDZRN3   4390000 perm   8002 sec   (549 perm/sec)   p_kst 1.567198e-04   p_cons 2.725497e-01   p_joint 4.063781e-04

Joint ci ratio: 9.263416e-02	ci left: 3.879698e-04	ci right 4.258745e-04	k: 1789	n:4400000
Cons ci ratio: 3.053092e-03	ci left: 2.721322e-01	ci right 2.729645e-01	k: 1199212	n:4400000
KS ci ratio: 1.491121e-01	ci left: 1.453348e-04	ci right 1.689676e-04	k: 690	n:4400000
PDZRN3   4400000 perm   8036 sec   (548 perm/sec)   p_kst 1.568182e-04   p_cons 2.725482e-01   p_joint 4.065909e-04

Joint ci ratio: 9.253083e-02	ci left: 3.879761e-04	ci right 4.258368e-04	k: 1793	n:4410000
Cons ci ratio: 3.049734e-03	ci left: 2.721189e-01	ci right 2.729503e-01	k: 1201877	n:4410000
KS ci ratio: 1.487894e-01	ci left: 1.456602e-04	ci right 1.692900e-04	k: 693	n:4410000
PDZRN3   4410000 perm   8069 sec   (547 perm/sec)   p_kst 1.571429e-04   p_cons 2.725345e-01   p_joint 4.065760e-04

Joint ci ratio: 9.232516e-02	ci left: 3.888664e-04	ci right 4.267252e-04	k: 1801	n:4420000
Cons ci ratio: 3.046236e-03	ci left: 2.721254e-01	ci right 2.729559e-01	k: 1204629	n:4420000
KS ci ratio: 1.482563e-01	ci left: 1.464198e-04	ci right 1.700802e-04	k: 698	n:4420000
PDZRN3   4420000 perm   8102 sec   (546 perm/sec)   p_kst 1.579186e-04   p_cons 2.725405e-01   p_joint 4.074661e-04

Joint ci ratio: 9.227399e-02	ci left: 3.884297e-04	ci right 4.262238e-04	k: 1803	n:4430000
Cons ci ratio: 3.042897e-03	ci left: 2.721127e-01	ci right 2.729422e-01	k: 1207296	n:4430000
KS ci ratio: 1.482563e-01	ci left: 1.460893e-04	ci right 1.696963e-04	k: 698	n:4430000
PDZRN3   4430000 perm   8135 sec   (545 perm/sec)   p_kst 1.575621e-04   p_cons 2.725273e-01   p_joint 4.069977e-04

Joint ci ratio: 9.217186e-02	ci left: 3.884350e-04	ci right 4.261855e-04	k: 1807	n:4440000
Cons ci ratio: 3.039497e-03	ci left: 2.721095e-01	ci right 2.729381e-01	k: 1210005	n:4440000
KS ci ratio: 1.480447e-01	ci left: 1.461940e-04	ci right 1.697813e-04	k: 700	n:4440000
PDZRN3   4440000 perm   8169 sec   (544 perm/sec)   p_kst 1.576577e-04   p_cons 2.725236e-01   p_joint 4.069820e-04

Joint ci ratio: 9.214641e-02	ci left: 3.877816e-04	ci right 4.254577e-04	k: 1808	n:4450000
Cons ci ratio: 3.036266e-03	ci left: 2.720857e-01	ci right 2.729133e-01	k: 1212622	n:4450000
KS ci ratio: 1.480447e-01	ci left: 1.458655e-04	ci right 1.693997e-04	k: 700	n:4450000
PDZRN3   4450000 perm   8202 sec   (543 perm/sec)   p_kst 1.573034e-04   p_cons 2.724993e-01   p_joint 4.062921e-04

Joint ci ratio: 9.204471e-02	ci left: 3.877883e-04	ci right 4.254213e-04	k: 1812	n:4460000
Cons ci ratio: 3.032845e-03	ci left: 2.720882e-01	ci right 2.729148e-01	k: 1215356	n:4460000
KS ci ratio: 1.479392e-01	ci left: 1.457543e-04	ci right 1.692524e-04	k: 701	n:4460000
PDZRN3   4460000 perm   8235 sec   (542 perm/sec)   p_kst 1.571749e-04   p_cons 2.725013e-01   p_joint 4.062780e-04

Joint ci ratio: 9.194334e-02	ci left: 3.877951e-04	ci right 4.253850e-04	k: 1816	n:4470000
Cons ci ratio: 3.029452e-03	ci left: 2.720884e-01	ci right 2.729141e-01	k: 1218080	n:4470000
KS ci ratio: 1.478340e-01	ci left: 1.456437e-04	ci right 1.691058e-04	k: 702	n:4470000
PDZRN3   4470000 perm   8268 sec   (541 perm/sec)   p_kst 1.570470e-04   p_cons 2.725011e-01   p_joint 4.062640e-04

Joint ci ratio: 9.186754e-02	ci left: 3.875837e-04	ci right 4.251205e-04	k: 1819	n:4480000
Cons ci ratio: 3.026021e-03	ci left: 2.720951e-01	ci right 2.729199e-01	k: 1220833	n:4480000
KS ci ratio: 1.477289e-01	ci left: 1.455336e-04	ci right 1.689598e-04	k: 703	n:4480000
PDZRN3   4480000 perm   8302 sec   (540 perm/sec)   p_kst 1.569196e-04   p_cons 2.725074e-01   p_joint 4.060268e-04

Joint ci ratio: 9.176675e-02	ci left: 3.875909e-04	ci right 4.250850e-04	k: 1823	n:4490000
Cons ci ratio: 3.022609e-03	ci left: 2.721009e-01	ci right 2.729248e-01	k: 1223582	n:4490000
KS ci ratio: 1.475195e-01	ci left: 1.456384e-04	ci right 1.690453e-04	k: 705	n:4490000
PDZRN3   4490000 perm   8335 sec   (539 perm/sec)   p_kst 1.570156e-04   p_cons 2.725127e-01   p_joint 4.060134e-04

Joint ci ratio: 9.164123e-02	ci left: 3.878152e-04	ci right 4.252769e-04	k: 1828	n:4500000
Cons ci ratio: 3.019229e-03	ci left: 2.721040e-01	ci right 2.729270e-01	k: 1226319	n:4500000
KS ci ratio: 1.473110e-01	ci left: 1.457428e-04	ci right 1.691305e-04	k: 707	n:4500000
PDZRN3   4500000 perm   8368 sec   (538 perm/sec)   p_kst 1.571111e-04   p_cons 2.725153e-01   p_joint 4.062222e-04

Joint ci ratio: 9.151621e-02	ci left: 3.880386e-04	ci right 4.254680e-04	k: 1833	n:4510000
Cons ci ratio: 3.015914e-03	ci left: 2.721000e-01	ci right 2.729220e-01	k: 1229024	n:4510000
KS ci ratio: 1.469999e-01	ci left: 1.460604e-04	ci right 1.694452e-04	k: 710	n:4510000
PDZRN3   4510000 perm   8401 sec   (537 perm/sec)   p_kst 1.574279e-04   p_cons 2.725109e-01   p_joint 4.064302e-04

Joint ci ratio: 9.139171e-02	ci left: 3.882610e-04	ci right 4.256582e-04	k: 1838	n:4520000
Cons ci ratio: 3.012566e-03	ci left: 2.721017e-01	ci right 2.729229e-01	k: 1231755	n:4520000
KS ci ratio: 1.467936e-01	ci left: 1.461635e-04	ci right 1.695290e-04	k: 712	n:4520000
PDZRN3   4520000 perm   8435 sec   (536 perm/sec)   p_kst 1.575221e-04   p_cons 2.725122e-01   p_joint 4.066372e-04

Joint ci ratio: 9.124296e-02	ci left: 3.886982e-04	ci right 4.260733e-04	k: 1844	n:4530000
Cons ci ratio: 3.009242e-03	ci left: 2.721017e-01	ci right 2.729220e-01	k: 1234478	n:4530000
KS ci ratio: 1.464857e-01	ci left: 1.464788e-04	ci right 1.698413e-04	k: 715	n:4530000
PDZRN3   4530000 perm   8469 sec   (535 perm/sec)   p_kst 1.578366e-04   p_cons 2.725117e-01   p_joint 4.070640e-04

Joint ci ratio: 9.116888e-02	ci left: 3.884877e-04	ci right 4.258107e-04	k: 1847	n:4540000
Cons ci ratio: 3.005916e-03	ci left: 2.721035e-01	ci right 2.729228e-01	k: 1237209	n:4540000
KS ci ratio: 1.462815e-01	ci left: 1.465805e-04	ci right 1.699238e-04	k: 717	n:4540000
PDZRN3   4540000 perm   8503 sec   (534 perm/sec)   p_kst 1.579295e-04   p_cons 2.725130e-01   p_joint 4.068282e-04

Joint ci ratio: 9.109498e-02	ci left: 3.882782e-04	ci right 4.255492e-04	k: 1850	n:4550000
Cons ci ratio: 3.002632e-03	ci left: 2.721012e-01	ci right 2.729197e-01	k: 1239922	n:4550000
KS ci ratio: 1.462815e-01	ci left: 1.462584e-04	ci right 1.695504e-04	k: 717	n:4550000
PDZRN3   4550000 perm   8537 sec   (533 perm/sec)   p_kst 1.575824e-04   p_cons 2.725103e-01   p_joint 4.065934e-04

Joint ci ratio: 9.097219e-02	ci left: 3.884983e-04	ci right 4.257374e-04	k: 1855	n:4560000
Cons ci ratio: 2.999253e-03	ci left: 2.721129e-01	ci right 2.729304e-01	k: 1242698	n:4560000
KS ci ratio: 1.460782e-01	ci left: 1.463602e-04	ci right 1.696332e-04	k: 719	n:4560000
PDZRN3   4560000 perm   8571 sec   (532 perm/sec)   p_kst 1.576754e-04   p_cons 2.725215e-01   p_joint 4.067982e-04

Joint ci ratio: 9.089876e-02	ci left: 3.882897e-04	ci right 4.254772e-04	k: 1858	n:4570000
Cons ci ratio: 2.995916e-03	ci left: 2.721205e-01	ci right 2.729371e-01	k: 1245456	n:4570000
KS ci ratio: 1.460782e-01	ci left: 1.460399e-04	ci right 1.692620e-04	k: 719	n:4570000
PDZRN3   4570000 perm   8605 sec   (531 perm/sec)   p_kst 1.573304e-04   p_cons 2.725287e-01   p_joint 4.065646e-04

Joint ci ratio: 9.077676e-02	ci left: 3.885088e-04	ci right 4.256647e-04	k: 1863	n:4580000
Cons ci ratio: 2.992644e-03	ci left: 2.721209e-01	ci right 2.729366e-01	k: 1248181	n:4580000
KS ci ratio: 1.459769e-01	ci left: 1.459314e-04	ci right 1.691188e-04	k: 720	n:4580000
PDZRN3   4580000 perm   8639 sec   (530 perm/sec)   p_kst 1.572052e-04   p_cons 2.725286e-01   p_joint 4.067686e-04

Joint ci ratio: 9.067952e-02	ci left: 3.885140e-04	ci right 4.256286e-04	k: 1867	n:4590000
Cons ci ratio: 2.989430e-03	ci left: 2.721149e-01	ci right 2.729298e-01	k: 1250877	n:4590000
KS ci ratio: 1.459769e-01	ci left: 1.456135e-04	ci right 1.687503e-04	k: 720	n:4590000
PDZRN3   4590000 perm   8673 sec   (529 perm/sec)   p_kst 1.568627e-04   p_cons 2.725222e-01   p_joint 4.067538e-04

Joint ci ratio: 9.051006e-02	ci left: 3.891567e-04	ci right 4.262595e-04	k: 1874	n:4600000
Cons ci ratio: 2.986145e-03	ci left: 2.721199e-01	ci right 2.729339e-01	k: 1253623	n:4600000
KS ci ratio: 1.457749e-01	ci left: 1.457158e-04	ci right 1.688341e-04	k: 722	n:4600000
PDZRN3   4600000 perm   8707 sec   (528 perm/sec)   p_kst 1.569565e-04   p_cons 2.725267e-01   p_joint 4.073913e-04

Joint ci ratio: 9.046185e-02	ci left: 3.887366e-04	ci right 4.257785e-04	k: 1876	n:4610000
Cons ci ratio: 2.982957e-03	ci left: 2.721133e-01	ci right 2.729264e-01	k: 1256316	n:4610000
KS ci ratio: 1.455737e-01	ci left: 1.458178e-04	ci right 1.689175e-04	k: 724	n:4610000
PDZRN3   4610000 perm   8742 sec   (527 perm/sec)   p_kst 1.570499e-04   p_cons 2.725197e-01   p_joint 4.069414e-04

Joint ci ratio: 9.034159e-02	ci left: 3.889529e-04	ci right 4.259636e-04	k: 1881	n:4620000
Cons ci ratio: 2.979667e-03	ci left: 2.721217e-01	ci right 2.729340e-01	k: 1259078	n:4620000
KS ci ratio: 1.454734e-01	ci left: 1.457107e-04	ci right 1.687762e-04	k: 725	n:4620000
PDZRN3   4620000 perm   8776 sec   (526 perm/sec)   p_kst 1.569264e-04   p_cons 2.725277e-01   p_joint 4.071429e-04

Joint ci ratio: 9.019791e-02	ci left: 3.893795e-04	ci right 4.263687e-04	k: 1887	n:4630000
Cons ci ratio: 2.976458e-03	ci left: 2.721208e-01	ci right 2.729322e-01	k: 1261797	n:4630000
KS ci ratio: 1.450743e-01	ci left: 1.462285e-04	ci right 1.693070e-04	k: 729	n:4630000
PDZRN3   4630000 perm   8811 sec   (525 perm/sec)   p_kst 1.574514e-04   p_cons 2.725263e-01   p_joint 4.075594e-04

Joint ci ratio: 9.019795e-02	ci left: 3.885403e-04	ci right 4.254498e-04	k: 1887	n:4640000
Cons ci ratio: 2.973339e-03	ci left: 2.721091e-01	ci right 2.729196e-01	k: 1264466	n:4640000
KS ci ratio: 1.450743e-01	ci left: 1.459134e-04	ci right 1.689421e-04	k: 729	n:4640000
PDZRN3   4640000 perm   8845 sec   (525 perm/sec)   p_kst 1.571121e-04   p_cons 2.725142e-01   p_joint 4.066810e-04

Joint ci ratio: 9.003117e-02	ci left: 3.891762e-04	ci right 4.260742e-04	k: 1894	n:4650000
Cons ci ratio: 2.970133e-03	ci left: 2.721106e-01	ci right 2.729202e-01	k: 1267196	n:4650000
KS ci ratio: 1.447771e-01	ci left: 1.462214e-04	ci right 1.692473e-04	k: 732	n:4650000
PDZRN3   4650000 perm   8880 sec   (524 perm/sec)   p_kst 1.574194e-04   p_cons 2.725153e-01   p_joint 4.073118e-04

Joint ci ratio: 8.988896e-02	ci left: 3.895997e-04	ci right 4.264764e-04	k: 1900	n:4660000
Cons ci ratio: 2.966965e-03	ci left: 2.721082e-01	ci right 2.729170e-01	k: 1269908	n:4660000
KS ci ratio: 1.446784e-01	ci left: 1.461144e-04	ci right 1.691065e-04	k: 733	n:4660000
PDZRN3   4660000 perm   8914 sec   (523 perm/sec)   p_kst 1.572961e-04   p_cons 2.725124e-01   p_joint 4.077253e-04

Joint ci ratio: 8.981813e-02	ci left: 3.893934e-04	ci right 4.262200e-04	k: 1903	n:4670000
Cons ci ratio: 2.963757e-03	ci left: 2.721127e-01	ci right 2.729206e-01	k: 1272652	n:4670000
KS ci ratio: 1.445800e-01	ci left: 1.460079e-04	ci right 1.689663e-04	k: 734	n:4670000
PDZRN3   4670000 perm   8949 sec   (522 perm/sec)   p_kst 1.571734e-04   p_cons 2.725165e-01   p_joint 4.074946e-04

Joint ci ratio: 8.979458e-02	ci left: 3.887702e-04	ci right 4.255277e-04	k: 1904	n:4680000
Cons ci ratio: 2.960524e-03	ci left: 2.721218e-01	ci right 2.729289e-01	k: 1275418	n:4680000
KS ci ratio: 1.445800e-01	ci left: 1.456959e-04	ci right 1.686052e-04	k: 734	n:4680000
PDZRN3   4680000 perm   8984 sec   (521 perm/sec)   p_kst 1.568376e-04   p_cons 2.725252e-01   p_joint 4.068376e-04

Joint ci ratio: 8.967696e-02	ci left: 3.889834e-04	ci right 4.257104e-04	k: 1909	n:4690000
Cons ci ratio: 2.957349e-03	ci left: 2.721246e-01	ci right 2.729307e-01	k: 1278154	n:4690000
KS ci ratio: 1.444818e-01	ci left: 1.455908e-04	ci right 1.684666e-04	k: 735	n:4690000
PDZRN3   4690000 perm   9019 sec   (520 perm/sec)   p_kst 1.567164e-04   p_cons 2.725275e-01   p_joint 4.070362e-04

Joint ci ratio: 8.991278e-02	ci left: 3.860759e-04	ci right 4.226293e-04	k: 1899	n:4700000
Cons ci ratio: 2.954322e-03	ci left: 2.721088e-01	ci right 2.729141e-01	k: 1280803	n:4700000
KS ci ratio: 1.443837e-01	ci left: 1.454861e-04	ci right 1.683287e-04	k: 736	n:4700000
PDZRN3   4700000 perm   9053 sec   (519 perm/sec)   p_kst 1.565957e-04   p_cons 2.725113e-01   p_joint 4.040426e-04

Joint ci ratio: 8.979470e-02	ci left: 3.862939e-04	ci right 4.228174e-04	k: 1904	n:4710000
Cons ci ratio: 2.951189e-03	ci left: 2.721085e-01	ci right 2.729130e-01	k: 1283525	n:4710000
KS ci ratio: 1.441882e-01	ci left: 1.455865e-04	ci right 1.684112e-04	k: 738	n:4710000
PDZRN3   4710000 perm   9088 sec   (518 perm/sec)   p_kst 1.566879e-04   p_cons 2.725106e-01   p_joint 4.042463e-04

Joint ci ratio: 9.139250e-02	ci left: 3.718091e-04	ci right 4.076220e-04	k: 1838	n:4720000
Cons ci ratio: 2.948042e-03	ci left: 2.721115e-01	ci right 2.729151e-01	k: 1286262	n:4720000
KS ci ratio: 1.439935e-01	ci left: 1.456865e-04	ci right 1.684934e-04	k: 740	n:4720000
PDZRN3   4720000 perm   9124 sec   (517 perm/sec)   p_kst 1.567797e-04   p_cons 2.725131e-01   p_joint 3.894068e-04

Joint ci ratio: 9.121902e-02	ci left: 3.724692e-04	ci right 4.082739e-04	k: 1845	n:4730000
Cons ci ratio: 2.945089e-03	ci left: 2.720897e-01	ci right 2.728924e-01	k: 1288882	n:4730000
KS ci ratio: 1.437029e-01	ci left: 1.459899e-04	ci right 1.687942e-04	k: 743	n:4730000
PDZRN3   4730000 perm   9159 sec   (516 perm/sec)   p_kst 1.570825e-04   p_cons 2.724909e-01   p_joint 3.900634e-04

Joint ci ratio: 9.112035e-02	ci left: 3.725080e-04	ci right 4.082757e-04	k: 1849	n:4740000
Cons ci ratio: 2.942018e-03	ci left: 2.720851e-01	ci right 2.728869e-01	k: 1291583	n:4740000
KS ci ratio: 1.434140e-01	ci left: 1.462921e-04	ci right 1.690938e-04	k: 746	n:4740000
PDZRN3   4740000 perm   9194 sec   (516 perm/sec)   p_kst 1.573840e-04   p_cons 2.724859e-01   p_joint 3.900844e-04

Joint ci ratio: 9.104657e-02	ci left: 3.723410e-04	ci right 4.080621e-04	k: 1852	n:4750000
Cons ci ratio: 2.938871e-03	ci left: 2.720921e-01	ci right 2.728931e-01	k: 1294339	n:4750000
KS ci ratio: 1.433181e-01	ci left: 1.461871e-04	ci right 1.689559e-04	k: 747	n:4750000
PDZRN3   4750000 perm   9230 sec   (515 perm/sec)   p_kst 1.572632e-04   p_cons 2.724924e-01   p_joint 3.898947e-04

Joint ci ratio: 9.089950e-02	ci left: 3.727906e-04	ci right 4.084940e-04	k: 1858	n:4760000
Cons ci ratio: 2.935779e-03	ci left: 2.720929e-01	ci right 2.728931e-01	k: 1297066	n:4760000
KS ci ratio: 1.431269e-01	ci left: 1.462851e-04	ci right 1.690361e-04	k: 749	n:4760000
PDZRN3   4760000 perm   9265 sec   (514 perm/sec)   p_kst 1.573529e-04   p_cons 2.724929e-01   p_joint 3.903361e-04

Joint ci ratio: 9.077750e-02	ci left: 3.730335e-04	ci right 4.087097e-04	k: 1863	n:4770000
Cons ci ratio: 2.932621e-03	ci left: 2.721040e-01	ci right 2.729034e-01	k: 1299842	n:4770000
KS ci ratio: 1.430316e-01	ci left: 1.461806e-04	ci right 1.688989e-04	k: 750	n:4770000
PDZRN3   4770000 perm   9300 sec   (513 perm/sec)   p_kst 1.572327e-04   p_cons 2.725036e-01   p_joint 3.905660e-04

Joint ci ratio: 9.068025e-02	ci left: 3.730709e-04	ci right 4.087104e-04	k: 1867	n:4780000
Cons ci ratio: 2.929503e-03	ci left: 2.721111e-01	ci right 2.729096e-01	k: 1302599	n:4780000
KS ci ratio: 1.429364e-01	ci left: 1.460765e-04	ci right 1.687622e-04	k: 751	n:4780000
PDZRN3   4780000 perm   9336 sec   (512 perm/sec)   p_kst 1.571130e-04   p_cons 2.725103e-01   p_joint 3.905858e-04

Joint ci ratio: 9.114518e-02	ci left: 3.684156e-04	ci right 4.038005e-04	k: 1848	n:4790000
Cons ci ratio: 2.926269e-03	ci left: 2.721351e-01	ci right 2.729328e-01	k: 1305437	n:4790000
KS ci ratio: 1.427467e-01	ci left: 1.461741e-04	ci right 1.688424e-04	k: 753	n:4790000
PDZRN3   4790000 perm   9370 sec   (511 perm/sec)   p_kst 1.572025e-04   p_cons 2.725338e-01   p_joint 3.858038e-04

Joint ci ratio: 9.092412e-02	ci left: 3.694804e-04	ci right 4.048769e-04	k: 1857	n:4800000
Cons ci ratio: 2.923225e-03	ci left: 2.721348e-01	ci right 2.729317e-01	k: 1308159	n:4800000
KS ci ratio: 1.423696e-01	ci left: 1.466732e-04	ci right 1.693536e-04	k: 757	n:4800000
PDZRN3   4800000 perm   9406 sec   (510 perm/sec)   p_kst 1.577083e-04   p_cons 2.725331e-01   p_joint 3.868750e-04

Joint ci ratio: 9.085081e-02	ci left: 3.693217e-04	ci right 4.046730e-04	k: 1860	n:4810000
Cons ci ratio: 2.920214e-03	ci left: 2.721312e-01	ci right 2.729273e-01	k: 1310865	n:4810000
KS ci ratio: 1.422757e-01	ci left: 1.465688e-04	ci right 1.692168e-04	k: 758	n:4810000
PDZRN3   4810000 perm   9443 sec   (509 perm/sec)   p_kst 1.575884e-04   p_cons 2.725291e-01   p_joint 3.866944e-04

Joint ci ratio: 9.080205e-02	ci left: 3.689610e-04	ci right 4.042578e-04	k: 1862	n:4820000
Cons ci ratio: 2.917066e-03	ci left: 2.721475e-01	ci right 2.729428e-01	k: 1313667	n:4820000
KS ci ratio: 1.421821e-01	ci left: 1.464648e-04	ci right 1.690806e-04	k: 759	n:4820000
PDZRN3   4820000 perm   9479 sec   (509 perm/sec)   p_kst 1.574689e-04   p_cons 2.725450e-01   p_joint 3.863071e-04

Joint ci ratio: 9.077772e-02	ci left: 3.683995e-04	ci right 4.036326e-04	k: 1863	n:4830000
Cons ci ratio: 2.913984e-03	ci left: 2.721561e-01	ci right 2.729505e-01	k: 1316432	n:4830000
KS ci ratio: 1.420887e-01	ci left: 1.463612e-04	ci right 1.689450e-04	k: 760	n:4830000
PDZRN3   4830000 perm   9515 sec   (508 perm/sec)   p_kst 1.573499e-04   p_cons 2.725532e-01   p_joint 3.857143e-04

Joint ci ratio: 9.060771e-02	ci left: 3.690518e-04	ci right 4.042777e-04	k: 1870	n:4840000
Cons ci ratio: 2.910992e-03	ci left: 2.721540e-01	ci right 2.729475e-01	k: 1319145	n:4840000
KS ci ratio: 1.418094e-01	ci left: 1.466566e-04	ci right 1.692377e-04	k: 763	n:4840000
PDZRN3   4840000 perm   9551 sec   (507 perm/sec)   p_kst 1.576446e-04   p_cons 2.725506e-01   p_joint 3.863636e-04

Joint ci ratio: 9.119476e-02	ci left: 3.634548e-04	ci right 3.983833e-04	k: 1846	n:4850000
Cons ci ratio: 2.908088e-03	ci left: 2.721409e-01	ci right 2.729336e-01	k: 1321805	n:4850000
KS ci ratio: 1.418094e-01	ci left: 1.463542e-04	ci right 1.688888e-04	k: 763	n:4850000
PDZRN3   4850000 perm   9592 sec   (506 perm/sec)   p_kst 1.573196e-04   p_cons 2.725371e-01   p_joint 3.806186e-04

Joint ci ratio: 9.112079e-02	ci left: 3.633102e-04	ci right 3.981949e-04	k: 1849	n:4860000
Cons ci ratio: 2.905153e-03	ci left: 2.721334e-01	ci right 2.729253e-01	k: 1324492	n:4860000
KS ci ratio: 1.417167e-01	ci left: 1.462516e-04	ci right 1.687543e-04	k: 764	n:4860000
PDZRN3   4860000 perm   9634 sec   (504 perm/sec)   p_kst 1.572016e-04   p_cons 2.725292e-01   p_joint 3.804527e-04

Joint ci ratio: 9.102244e-02	ci left: 3.633668e-04	ci right 3.982173e-04	k: 1853	n:4870000
Cons ci ratio: 2.902175e-03	ci left: 2.721329e-01	ci right 2.729240e-01	k: 1327213	n:4870000
KS ci ratio: 1.414396e-01	ci left: 1.465455e-04	ci right 1.690456e-04	k: 767	n:4870000
PDZRN3   4870000 perm   9676 sec   (503 perm/sec)   p_kst 1.574949e-04   p_cons 2.725283e-01   p_joint 3.804928e-04

Joint ci ratio: 9.087549e-02	ci left: 3.638238e-04	ci right 3.986587e-04	k: 1859	n:4880000
Cons ci ratio: 2.899233e-03	ci left: 2.721288e-01	ci right 2.729191e-01	k: 1329916	n:4880000
KS ci ratio: 1.411642e-01	ci left: 1.468382e-04	ci right 1.693357e-04	k: 770	n:4880000
PDZRN3   4880000 perm   9718 sec   (502 perm/sec)   p_kst 1.577869e-04   p_cons 2.725238e-01   p_joint 3.809426e-04

Joint ci ratio: 9.082669e-02	ci left: 3.634795e-04	ci right 3.982618e-04	k: 1861	n:4890000
Cons ci ratio: 2.896348e-03	ci left: 2.721181e-01	ci right 2.729076e-01	k: 1332587	n:4890000
KS ci ratio: 1.410727e-01	ci left: 1.467352e-04	ci right 1.692011e-04	k: 771	n:4890000
PDZRN3   4890000 perm   9759 sec   (501 perm/sec)   p_kst 1.576687e-04   p_cons 2.725127e-01   p_joint 3.805726e-04

Joint ci ratio: 9.080234e-02	ci left: 3.629371e-04	ci right 3.976577e-04	k: 1862	n:4900000
Cons ci ratio: 2.893466e-03	ci left: 2.721083e-01	ci right 2.728969e-01	k: 1335262	n:4900000
KS ci ratio: 1.410728e-01	ci left: 1.464357e-04	ci right 1.688558e-04	k: 771	n:4900000
PDZRN3   4900000 perm   9801 sec   (500 perm/sec)   p_kst 1.573469e-04   p_cons 2.725024e-01   p_joint 3.800000e-04

Joint ci ratio: 9.070501e-02	ci left: 3.629941e-04	ci right 3.976810e-04	k: 1866	n:4910000
Cons ci ratio: 2.890614e-03	ci left: 2.720954e-01	ci right 2.728833e-01	k: 1337922	n:4910000
KS ci ratio: 1.409815e-01	ci left: 1.463340e-04	ci right 1.687228e-04	k: 772	n:4910000
PDZRN3   4910000 perm   9843 sec   (499 perm/sec)   p_kst 1.572301e-04   p_cons 2.724892e-01   p_joint 3.800407e-04

Joint ci ratio: 9.053542e-02	ci left: 3.636469e-04	ci right 3.983277e-04	k: 1873	n:4920000
Cons ci ratio: 2.887603e-03	ci left: 2.721058e-01	ci right 2.728929e-01	k: 1340696	n:4920000
KS ci ratio: 1.408904e-01	ci left: 1.462326e-04	ci right 1.685902e-04	k: 773	n:4920000
PDZRN3   4920000 perm   9885 sec   (498 perm/sec)   p_kst 1.571138e-04   p_cons 2.724992e-01   p_joint 3.806911e-04

Joint ci ratio: 9.043895e-02	ci left: 3.637022e-04	ci right 3.983494e-04	k: 1877	n:4930000
Cons ci ratio: 2.884671e-03	ci left: 2.721064e-01	ci right 2.728927e-01	k: 1343422	n:4930000
KS ci ratio: 1.407087e-01	ci left: 1.463274e-04	ci right 1.686682e-04	k: 775	n:4930000
PDZRN3   4930000 perm   9928 sec   (497 perm/sec)   p_kst 1.572008e-04   p_cons 2.724994e-01   p_joint 3.807302e-04

Joint ci ratio: 9.041490e-02	ci left: 3.631638e-04	ci right 3.977501e-04	k: 1878	n:4940000
Cons ci ratio: 2.881779e-03	ci left: 2.721027e-01	ci right 2.728882e-01	k: 1346127	n:4940000
KS ci ratio: 1.407087e-01	ci left: 1.460312e-04	ci right 1.683268e-04	k: 775	n:4940000
PDZRN3   4940000 perm   9970 sec   (495 perm/sec)   p_kst 1.568826e-04   p_cons 2.724953e-01   p_joint 3.801619e-04

Joint ci ratio: 9.036684e-02	ci left: 3.628251e-04	ci right 3.973597e-04	k: 1880	n:4950000
Cons ci ratio: 2.878824e-03	ci left: 2.721090e-01	ci right 2.728937e-01	k: 1348881	n:4950000
KS ci ratio: 1.405277e-01	ci left: 1.461260e-04	ci right 1.684050e-04	k: 777	n:4950000
PDZRN3   4950000 perm   10013 sec   (494 perm/sec)   p_kst 1.569697e-04   p_cons 2.725012e-01   p_joint 3.797980e-04

Joint ci ratio: 9.034285e-02	ci left: 3.622906e-04	ci right 3.967647e-04	k: 1881	n:4960000
Cons ci ratio: 2.875900e-03	ci left: 2.721122e-01	ci right 2.728961e-01	k: 1351620	n:4960000
KS ci ratio: 1.405278e-01	ci left: 1.458314e-04	ci right 1.680655e-04	k: 777	n:4960000
PDZRN3   4960000 perm   10056 sec   (493 perm/sec)   p_kst 1.566532e-04   p_cons 2.725040e-01   p_joint 3.792339e-04

Joint ci ratio: 9.043909e-02	ci left: 3.607750e-04	ci right 3.951434e-04	k: 1877	n:4970000
Cons ci ratio: 2.872882e-03	ci left: 2.721297e-01	ci right 2.729128e-01	k: 1354430	n:4970000
KS ci ratio: 1.404376e-01	ci left: 1.457321e-04	ci right 1.679356e-04	k: 778	n:4970000
PDZRN3   4970000 perm   10098 sec   (492 perm/sec)   p_kst 1.565392e-04   p_cons 2.725211e-01   p_joint 3.776660e-04

Joint ci ratio: 9.036694e-02	ci left: 3.606394e-04	ci right 3.949660e-04	k: 1880	n:4980000
Cons ci ratio: 2.869893e-03	ci left: 2.721443e-01	ci right 2.729266e-01	k: 1357226	n:4980000
KS ci ratio: 1.402576e-01	ci left: 1.458270e-04	ci right 1.680141e-04	k: 780	n:4980000
PDZRN3   4980000 perm   10142 sec   (491 perm/sec)   p_kst 1.566265e-04   p_cons 2.725353e-01   p_joint 3.775100e-04

Joint ci ratio: 9.024707e-02	ci left: 3.608960e-04	ci right 3.951991e-04	k: 1885	n:4990000
Cons ci ratio: 2.867016e-03	ci left: 2.721446e-01	ci right 2.729262e-01	k: 1359951	n:4990000
KS ci ratio: 1.401679e-01	ci left: 1.457281e-04	ci right 1.678848e-04	k: 781	n:4990000
PDZRN3   4990000 perm   10185 sec   (490 perm/sec)   p_kst 1.565130e-04   p_cons 2.725353e-01   p_joint 3.777555e-04

Joint ci ratio: 8.329157e-02	ci left: 4.243537e-04	ci right 4.614288e-04	k: 2213	n:5000000
Cons ci ratio: 2.721448e-03	ci left: 2.928650e-01	ci right 2.936633e-01	k: 1466320	n:5000000
KS ci ratio: 1.398998e-01	ci left: 1.460156e-04	ci right 1.681700e-04	k: 784	n:5000000
PDZRN3   5000000 perm   10228 sec   (489 perm/sec)   p_kst 1.568000e-04   p_cons 2.932640e-01   p_joint 4.426000e-04

Outputting figure to mutsig2_images.part000000000129/PDZRN3.16_3241_5000000_0.0001568_0.29326_0.0004426.png
                gene_name: PDZRN3
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.00016 
        ci_ks_bounds_left: 0.00015 
       ci_ks_bounds_right: 0.00017 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.00044 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00046 

Current progress: 4 percent done.
PDZRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
Cons ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
PDZRN4   10000 perm   2 sec   (4484 perm/sec)   p_kst 5.500000e-02   p_cons 8.820000e-02   p_joint 3.270000e-02

Joint ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
Cons ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
KS ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
PDZRN4   20000 perm   5 sec   (4078 perm/sec)   p_kst 5.305000e-02   p_cons 9.820000e-02   p_joint 3.075000e-02

Joint ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
Cons ci ratio: 7.276711e-02	ci left: 8.498152e-02	ci right 9.143182e-02	k: 2645	n:30000
KS ci ratio: 9.689447e-02	ci left: 4.922128e-02	ci right 5.426598e-02	k: 1551	n:30000
PDZRN4   30000 perm   8 sec   (3915 perm/sec)   p_kst 5.170000e-02   p_cons 8.816667e-02   p_joint 2.526667e-02

Joint ci ratio: 1.028774e-01	ci left: 3.322031e-02	ci right 3.684759e-02	k: 1400	n:40000
Cons ci ratio: 6.332397e-02	ci left: 8.464985e-02	ci right 9.021021e-02	k: 3496	n:40000
KS ci ratio: 8.362259e-02	ci left: 4.989327e-02	ci right 5.427205e-02	k: 2082	n:40000
PDZRN4   40000 perm   10 sec   (3815 perm/sec)   p_kst 5.205000e-02   p_cons 8.740000e-02   p_joint 3.500000e-02

Joint ci ratio: 9.167130e-02	ci left: 3.366040e-02	ci right 3.691384e-02	k: 1763	n:50000
Cons ci ratio: 5.643566e-02	ci left: 8.551108e-02	ci right 9.049687e-02	k: 4399	n:50000
KS ci ratio: 7.450439e-02	ci left: 5.050215e-02	ci right 5.443002e-02	k: 2622	n:50000
PDZRN4   50000 perm   13 sec   (3739 perm/sec)   p_kst 5.244000e-02   p_cons 8.798000e-02   p_joint 3.526000e-02

Outputting figure to mutsig2_images.part000000000129/PDZRN4.14_3224_50000_0.05244_0.08798_0.03526.png
                gene_name: PDZRN4
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 6 percent done.
PGK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
PGK2   10000 perm   2 sec   (5015 perm/sec)   p_kst 5.031000e-01   p_cons 3.740000e-02   p_joint 1.101000e-01

Joint ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
Cons ci ratio: 1.426129e-01	ci left: 3.379874e-02	ci right 3.903715e-02	k: 727	n:20000
KS ci ratio: 2.791677e-02	ci left: 4.894466e-01	ci right 5.033544e-01	k: 9928	n:20000
PGK2   20000 perm   4 sec   (4581 perm/sec)   p_kst 4.964000e-01   p_cons 3.635000e-02   p_joint 1.163000e-01

Joint ci ratio: 5.846138e-02	ci left: 1.265100e-01	ci right 1.341618e-01	k: 3909	n:30000
Cons ci ratio: 1.205112e-01	ci left: 3.201016e-02	ci right 3.614738e-02	k: 1021	n:30000
KS ci ratio: 2.247464e-02	ci left: 4.977921e-01	ci right 5.091406e-01	k: 15104	n:30000
PGK2   30000 perm   7 sec   (4395 perm/sec)   p_kst 5.034667e-01   p_cons 3.403333e-02   p_joint 1.303000e-01

Joint ci ratio: 6.005865e-02	ci left: 9.335192e-02	ci right 9.915684e-02	k: 3849	n:40000
Cons ci ratio: 9.804732e-02	ci left: 3.653794e-02	ci right 4.032944e-02	k: 1536	n:40000
KS ci ratio: 2.011361e-02	ci left: 4.821403e-01	ci right 4.919616e-01	k: 19482	n:40000
PGK2   40000 perm   9 sec   (4268 perm/sec)   p_kst 4.870500e-01   p_cons 3.840000e-02   p_joint 9.622500e-02

Outputting figure to mutsig2_images.part000000000129/PGK2.14_1258_40000_0.48705_0.0384_0.096225.png
                gene_name: PGK2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 8 percent done.
PEX5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
Cons ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
KS ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
PEX5L   10000 perm   2 sec   (5211 perm/sec)   p_kst 5.725000e-01   p_cons 4.289000e-01   p_joint 6.593000e-01

Outputting figure to mutsig2_images.part000000000129/PEX5L.11_1941_10000_0.5725_0.4289_0.6593.png
                gene_name: PEX5L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 10 percent done.
PEAR1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
Cons ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
KS ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
PEAR1   10000 perm   2 sec   (5213 perm/sec)   p_kst 5.883000e-01   p_cons 7.307000e-01   p_joint 7.520000e-01

Outputting figure to mutsig2_images.part000000000129/PEAR1.7_3202_10000_0.5883_0.7307_0.752.png
                gene_name: PEAR1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 12 percent done.
PELI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
PELI2   10000 perm   2 sec   (5566 perm/sec)   p_kst 8.623000e-01   p_cons 2.145000e-01   p_joint 6.012000e-01

Outputting figure to mutsig2_images.part000000000129/PELI2.7_1287_10000_0.8623_0.2145_0.6012.png
                gene_name: PELI2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
PEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
Cons ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
KS ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
PEX1   10000 perm   2 sec   (4574 perm/sec)   p_kst 1.124000e-01   p_cons 3.110000e-02   p_joint 4.960000e-02

Joint ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
Cons ci ratio: 1.538196e-01	ci left: 2.902635e-02	ci right 3.391111e-02	k: 628	n:20000
KS ci ratio: 7.545444e-02	ci left: 1.143957e-01	ci right 1.234154e-01	k: 2377	n:20000
PEX1   20000 perm   5 sec   (4134 perm/sec)   p_kst 1.188500e-01   p_cons 3.140000e-02   p_joint 6.665000e-02

Joint ci ratio: 8.550795e-02	ci left: 6.266056e-02	ci right 6.829061e-02	k: 1963	n:30000
Cons ci ratio: 1.250139e-01	ci left: 2.974625e-02	ci right 3.374511e-02	k: 951	n:30000
KS ci ratio: 6.134546e-02	ci left: 1.161128e-01	ci right 1.234943e-01	k: 3593	n:30000
PEX1   30000 perm   8 sec   (3977 perm/sec)   p_kst 1.197667e-01   p_cons 3.170000e-02   p_joint 6.543333e-02

Joint ci ratio: 7.080349e-02	ci left: 6.864941e-02	ci right 7.371306e-02	k: 2846	n:40000
Cons ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
KS ci ratio: 5.529988e-02	ci left: 1.085054e-01	ci right 1.147011e-01	k: 4463	n:40000
PEX1   40000 perm   10 sec   (3867 perm/sec)   p_kst 1.115750e-01   p_cons 3.362500e-02   p_joint 7.115000e-02

Joint ci ratio: 6.325936e-02	ci left: 6.905942e-02	ci right 7.359050e-02	k: 3565	n:50000
Cons ci ratio: 9.375733e-02	ci left: 3.219402e-02	ci right 3.538041e-02	k: 1688	n:50000
KS ci ratio: 4.784091e-02	ci left: 1.155407e-01	ci right 1.212236e-01	k: 5918	n:50000
PEX1   50000 perm   13 sec   (3786 perm/sec)   p_kst 1.183600e-01   p_cons 3.376000e-02   p_joint 7.130000e-02

Outputting figure to mutsig2_images.part000000000129/PEX1.7_3948_50000_0.11836_0.03376_0.0713.png
                gene_name: PEX1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 16 percent done.
PGBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
Cons ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
KS ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
PGBD3   10000 perm   2 sec   (5313 perm/sec)   p_kst 1.972000e-01   p_cons 6.570000e-02   p_joint 1.056000e-01

Joint ci ratio: 7.224929e-02	ci left: 1.236453e-01	ci right 1.329631e-01	k: 2565	n:20000
Cons ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
KS ci ratio: 5.638072e-02	ci left: 1.891330e-01	ci right 2.001559e-01	k: 3892	n:20000
PGBD3   20000 perm   4 sec   (4807 perm/sec)   p_kst 1.946000e-01   p_cons 6.535000e-02   p_joint 1.282500e-01

Joint ci ratio: 6.588813e-02	ci left: 1.020455e-01	ci right 1.090311e-01	k: 3165	n:30000
Cons ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
KS ci ratio: 4.608141e-02	ci left: 1.898359e-01	ci right 1.988234e-01	k: 5829	n:30000
PGBD3   30000 perm   7 sec   (4609 perm/sec)   p_kst 1.943000e-01   p_cons 6.676667e-02   p_joint 1.055000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD3.7_1786_30000_0.1943_0.066767_0.1055.png
                gene_name: PGBD3
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 18 percent done.
PFKFB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
Cons ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
KS ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
PFKFB1   10000 perm   2 sec   (5465 perm/sec)   p_kst 2.898000e-01   p_cons 7.792000e-01   p_joint 4.220000e-01

Outputting figure to mutsig2_images.part000000000129/PFKFB1.6_1472_10000_0.2898_0.7792_0.422.png
                gene_name: PFKFB1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 20 percent done.
PGBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
PGBD1   10000 perm   2 sec   (5696 perm/sec)   p_kst 1.400000e-03   p_cons 9.334000e-01   p_joint 1.400000e-02

Joint ci ratio: 3.266248e-01	ci left: 5.983476e-03	ci right 8.363189e-03	k: 142	n:20000
Cons ci ratio: 7.207754e-03	ci left: 9.332363e-01	ci right 9.400360e-01	k: 18734	n:20000
KS ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
PGBD1   20000 perm   4 sec   (5082 perm/sec)   p_kst 1.450000e-03   p_cons 9.367000e-01   p_joint 7.100000e-03

Joint ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
Cons ci ratio: 5.994537e-03	ci left: 9.316074e-01	ci right 9.372414e-01	k: 28034	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
PGBD1   30000 perm   6 sec   (4839 perm/sec)   p_kst 1.266667e-03   p_cons 9.344667e-01   p_joint 5.400000e-03

Joint ci ratio: 1.807237e-01	ci left: 1.057374e-02	ci right 1.269805e-02	k: 464	n:40000
Cons ci ratio: 5.207754e-03	ci left: 9.315990e-01	ci right 9.364878e-01	k: 37363	n:40000
KS ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
PGBD1   40000 perm   9 sec   (4673 perm/sec)   p_kst 1.275000e-03   p_cons 9.340750e-01   p_joint 1.160000e-02

Joint ci ratio: 1.682480e-01	ci left: 9.835842e-03	ci right 1.166163e-02	k: 536	n:50000
Cons ci ratio: 4.656126e-03	ci left: 9.319103e-01	ci right 9.362792e-01	k: 46706	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
PGBD1   50000 perm   11 sec   (4555 perm/sec)   p_kst 1.200000e-03   p_cons 9.341200e-01   p_joint 1.072000e-02

Joint ci ratio: 1.680849e-01	ci left: 8.227880e-03	ci right 9.753516e-03	k: 538	n:60000
Cons ci ratio: 4.247025e-03	ci left: 9.322036e-01	ci right 9.361876e-01	k: 56053	n:60000
KS ci ratio: 4.464350e-01	ci left: 9.981151e-04	ci right 1.585169e-03	k: 76	n:60000
PGBD1   60000 perm   13 sec   (4448 perm/sec)   p_kst 1.266667e-03   p_cons 9.342167e-01   p_joint 8.966667e-03

Joint ci ratio: 1.750322e-01	ci left: 6.491371e-03	ci right 7.750005e-03	k: 497	n:70000
Cons ci ratio: 3.943872e-03	ci left: 9.319764e-01	ci right 9.356733e-01	k: 65369	n:70000
KS ci ratio: 4.224417e-01	ci left: 9.700399e-04	ci right 1.501267e-03	k: 85	n:70000
PGBD1   70000 perm   16 sec   (4354 perm/sec)   p_kst 1.214286e-03   p_cons 9.338429e-01   p_joint 7.100000e-03

Joint ci ratio: 1.659662e-01	ci left: 6.350054e-03	ci right 7.511137e-03	k: 553	n:80000
Cons ci ratio: 3.675079e-03	ci left: 9.325738e-01	ci right 9.360197e-01	k: 74745	n:80000
KS ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
PGBD1   80000 perm   19 sec   (4272 perm/sec)   p_kst 1.262500e-03   p_cons 9.343125e-01   p_joint 6.912500e-03

Joint ci ratio: 1.941060e-01	ci left: 4.073205e-03	ci right 4.959198e-03	k: 405	n:90000
Cons ci ratio: 3.470551e-03	ci left: 9.324707e-01	ci right 9.357235e-01	k: 84070	n:90000
KS ci ratio: 3.685290e-01	ci left: 1.024779e-03	ci right 1.497201e-03	k: 112	n:90000
PGBD1   90000 perm   21 sec   (4188 perm/sec)   p_kst 1.244444e-03   p_cons 9.341111e-01   p_joint 4.500000e-03

Joint ci ratio: 1.375179e-01	ci left: 7.505458e-03	ci right 8.623359e-03	k: 805	n:100000
Cons ci ratio: 3.299144e-03	ci left: 9.323020e-01	ci right 9.353928e-01	k: 93386	n:100000
KS ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
PGBD1   100000 perm   24 sec   (4111 perm/sec)   p_kst 1.210000e-03   p_cons 9.338600e-01   p_joint 8.050000e-03

Joint ci ratio: 1.518953e-01	ci left: 5.560892e-03	ci right 6.483627e-03	k: 661	n:110000
Cons ci ratio: 3.136233e-03	ci left: 9.327464e-01	ci right 9.356852e-01	k: 102765	n:110000
KS ci ratio: 3.397000e-01	ci left: 1.004124e-03	ci right 1.422888e-03	k: 132	n:110000
PGBD1   110000 perm   27 sec   (4037 perm/sec)   p_kst 1.200000e-03   p_cons 9.342273e-01   p_joint 6.009091e-03

Joint ci ratio: 1.511323e-01	ci left: 5.153523e-03	ci right 6.003973e-03	k: 668	n:120000
Cons ci ratio: 2.999499e-03	ci left: 9.329424e-01	ci right 9.357532e-01	k: 112123	n:120000
KS ci ratio: 3.167098e-01	ci left: 1.073404e-03	ci right 1.484640e-03	k: 152	n:120000
PGBD1   120000 perm   30 sec   (3967 perm/sec)   p_kst 1.266667e-03   p_cons 9.343583e-01   p_joint 5.566667e-03

Joint ci ratio: 1.209492e-01	ci left: 7.530356e-03	ci right 8.507165e-03	k: 1041	n:130000
Cons ci ratio: 2.880655e-03	ci left: 9.330484e-01	ci right 9.357476e-01	k: 121473	n:130000
KS ci ratio: 2.887805e-01	ci left: 1.211234e-03	ci right 1.626901e-03	k: 183	n:130000
PGBD1   130000 perm   33 sec   (3900 perm/sec)   p_kst 1.407692e-03   p_cons 9.344077e-01   p_joint 8.007692e-03

Joint ci ratio: 1.200018e-01	ci left: 7.110149e-03	ci right 8.024709e-03	k: 1058	n:140000
Cons ci ratio: 2.772151e-03	ci left: 9.332635e-01	ci right 9.358613e-01	k: 130840	n:140000
KS ci ratio: 2.742539e-01	ci left: 1.257500e-03	ci right 1.663598e-03	k: 203	n:140000
PGBD1   140000 perm   37 sec   (3835 perm/sec)   p_kst 1.450000e-03   p_cons 9.345714e-01   p_joint 7.557143e-03

Joint ci ratio: 1.205493e-01	ci left: 6.577835e-03	ci right 7.428056e-03	k: 1049	n:150000
Cons ci ratio: 2.675329e-03	ci left: 9.334380e-01	ci right 9.359452e-01	k: 140205	n:150000
KS ci ratio: 2.659135e-01	ci left: 1.254466e-03	ci right 1.645213e-03	k: 216	n:150000
PGBD1   150000 perm   40 sec   (3777 perm/sec)   p_kst 1.440000e-03   p_cons 9.347000e-01   p_joint 6.993333e-03

Joint ci ratio: 1.181643e-01	ci left: 6.427417e-03	ci right 7.240608e-03	k: 1092	n:160000
Cons ci ratio: 2.586788e-03	ci left: 9.336486e-01	ci right 9.360731e-01	k: 149579	n:160000
KS ci ratio: 2.588546e-01	ci left: 1.246129e-03	ci right 1.622309e-03	k: 228	n:160000
PGBD1   160000 perm   43 sec   (3719 perm/sec)   p_kst 1.425000e-03   p_cons 9.348688e-01   p_joint 6.825000e-03

Joint ci ratio: 1.184065e-01	ci left: 6.026426e-03	ci right 6.790554e-03	k: 1088	n:170000
Cons ci ratio: 2.511327e-03	ci left: 9.335983e-01	ci right 9.359516e-01	k: 158913	n:170000
KS ci ratio: 2.539172e-01	ci left: 1.222365e-03	ci right 1.583218e-03	k: 237	n:170000
PGBD1   170000 perm   46 sec   (3662 perm/sec)   p_kst 1.394118e-03   p_cons 9.347824e-01   p_joint 6.400000e-03

Joint ci ratio: 1.174017e-01	ci left: 5.794026e-03	ci right 6.522017e-03	k: 1107	n:180000
Cons ci ratio: 2.437655e-03	ci left: 9.337785e-01	ci right 9.360630e-01	k: 168287	n:180000
KS ci ratio: 2.467632e-01	ci left: 1.227355e-03	ci right 1.577908e-03	k: 251	n:180000
PGBD1   180000 perm   50 sec   (3607 perm/sec)   p_kst 1.394444e-03   p_cons 9.349278e-01   p_joint 6.150000e-03

Joint ci ratio: 1.241974e-01	ci left: 4.891737e-03	ci right 5.544552e-03	k: 990	n:190000
Cons ci ratio: 2.372253e-03	ci left: 9.338292e-01	ci right 9.360523e-01	k: 177640	n:190000
KS ci ratio: 2.397309e-01	ci left: 1.236894e-03	ci right 1.578609e-03	k: 266	n:190000
PGBD1   190000 perm   53 sec   (3553 perm/sec)   p_kst 1.400000e-03   p_cons 9.349474e-01   p_joint 5.210526e-03

Joint ci ratio: 1.244664e-01	ci left: 4.627732e-03	ci right 5.246750e-03	k: 986	n:200000
Cons ci ratio: 2.312893e-03	ci left: 9.338201e-01	ci right 9.359873e-01	k: 186982	n:200000
KS ci ratio: 2.349419e-01	ci left: 1.226779e-03	ci right 1.557944e-03	k: 277	n:200000
PGBD1   200000 perm   57 sec   (3503 perm/sec)   p_kst 1.385000e-03   p_cons 9.349100e-01   p_joint 4.930000e-03

Joint ci ratio: 1.254424e-01	ci left: 4.338128e-03	ci right 4.923294e-03	k: 971	n:210000
Cons ci ratio: 2.256363e-03	ci left: 9.338892e-01	ci right 9.360035e-01	k: 196340	n:210000
KS ci ratio: 2.292406e-01	ci left: 1.231152e-03	ci right 1.554291e-03	k: 291	n:210000
PGBD1   210000 perm   61 sec   (3453 perm/sec)   p_kst 1.385714e-03   p_cons 9.349524e-01   p_joint 4.623810e-03

Joint ci ratio: 1.023205e-01	ci left: 6.288036e-03	ci right 6.970515e-03	k: 1457	n:220000
Cons ci ratio: 2.204197e-03	ci left: 9.339298e-01	ci right 9.359951e-01	k: 205693	n:220000
KS ci ratio: 2.221251e-01	ci left: 1.256675e-03	ci right 1.574876e-03	k: 310	n:220000
PGBD1   220000 perm   65 sec   (3404 perm/sec)   p_kst 1.409091e-03   p_cons 9.349682e-01   p_joint 6.622727e-03

Joint ci ratio: 1.016361e-01	ci left: 6.099351e-03	ci right 6.756658e-03	k: 1477	n:230000
Cons ci ratio: 2.157030e-03	ci left: 9.338797e-01	ci right 9.359006e-01	k: 215026	n:230000
KS ci ratio: 2.169543e-01	ci left: 1.263669e-03	ci right 1.575200e-03	k: 325	n:230000
PGBD1   230000 perm   69 sec   (3356 perm/sec)   p_kst 1.413043e-03   p_cons 9.348957e-01   p_joint 6.421739e-03

Joint ci ratio: 1.012029e-01	ci left: 5.897973e-03	ci right 6.530707e-03	k: 1490	n:240000
Cons ci ratio: 2.111609e-03	ci left: 9.339015e-01	ci right 9.358797e-01	k: 224375	n:240000
KS ci ratio: 2.124408e-01	ci left: 1.266213e-03	ci right 1.571032e-03	k: 339	n:240000
PGBD1   240000 perm   73 sec   (3309 perm/sec)   p_kst 1.412500e-03   p_cons 9.348958e-01   p_joint 6.208333e-03

Joint ci ratio: 1.006736e-01	ci left: 5.724413e-03	ci right 6.335125e-03	k: 1506	n:250000
Cons ci ratio: 2.069892e-03	ci left: 9.338655e-01	ci right 9.358044e-01	k: 233710	n:250000
KS ci ratio: 2.084928e-01	ci left: 1.264824e-03	ci right 1.562928e-03	k: 352	n:250000
PGBD1   250000 perm   77 sec   (3265 perm/sec)   p_kst 1.408000e-03   p_cons 9.348400e-01   p_joint 6.024000e-03

Joint ci ratio: 1.008876e-01	ci left: 5.481713e-03	ci right 6.067848e-03	k: 1500	n:260000
Cons ci ratio: 2.028503e-03	ci left: 9.339566e-01	ci right 9.358568e-01	k: 243077	n:260000
KS ci ratio: 2.058868e-01	ci left: 1.248995e-03	ci right 1.539225e-03	k: 361	n:260000
PGBD1   260000 perm   81 sec   (3221 perm/sec)   p_kst 1.388462e-03   p_cons 9.349115e-01   p_joint 5.769231e-03

Joint ci ratio: 1.025606e-01	ci left: 5.105381e-03	ci right 5.660873e-03	k: 1452	n:270000
Cons ci ratio: 1.990770e-03	ci left: 9.339629e-01	ci right 9.358277e-01	k: 252423	n:270000
KS ci ratio: 2.014815e-01	ci left: 1.258974e-03	ci right 1.544494e-03	k: 377	n:270000
PGBD1   270000 perm   85 sec   (3179 perm/sec)   p_kst 1.396296e-03   p_cons 9.349000e-01   p_joint 5.377778e-03

Joint ci ratio: 1.044290e-01	ci left: 4.745572e-03	ci right 5.271897e-03	k: 1401	n:280000
Cons ci ratio: 1.955355e-03	ci left: 9.339512e-01	ci right 9.357827e-01	k: 261764	n:280000
KS ci ratio: 1.983583e-01	ci left: 1.254722e-03	ci right 1.534333e-03	k: 389	n:280000
PGBD1   280000 perm   89 sec   (3137 perm/sec)   p_kst 1.389286e-03   p_cons 9.348714e-01   p_joint 5.003571e-03

Joint ci ratio: 1.060462e-01	ci left: 4.440878e-03	ci right 4.941513e-03	k: 1359	n:290000
Cons ci ratio: 1.922254e-03	ci left: 9.339093e-01	ci right 9.357096e-01	k: 271096	n:290000
KS ci ratio: 1.958644e-01	ci left: 1.244236e-03	ci right 1.517608e-03	k: 399	n:290000
PGBD1   290000 perm   94 sec   (3095 perm/sec)   p_kst 1.375862e-03   p_cons 9.348138e-01   p_joint 4.686207e-03

Joint ci ratio: 1.045590e-01	ci left: 4.419423e-03	ci right 4.910222e-03	k: 1398	n:300000
Cons ci ratio: 1.889227e-03	ci left: 9.339711e-01	ci right 9.357405e-01	k: 280458	n:300000
KS ci ratio: 1.911422e-01	ci left: 1.266200e-03	ci right 1.536912e-03	k: 419	n:300000
PGBD1   300000 perm   98 sec   (3056 perm/sec)   p_kst 1.396667e-03   p_cons 9.348600e-01   p_joint 4.660000e-03

Joint ci ratio: 1.033858e-01	ci left: 4.377397e-03	ci right 4.857742e-03	k: 1430	n:310000
Cons ci ratio: 1.861093e-03	ci left: 9.338149e-01	ci right 9.355576e-01	k: 289754	n:310000
KS ci ratio: 1.880340e-01	ci left: 1.268373e-03	ci right 1.534636e-03	k: 433	n:310000
PGBD1   310000 perm   103 sec   (3018 perm/sec)   p_kst 1.396774e-03   p_cons 9.346903e-01   p_joint 4.612903e-03

Joint ci ratio: 9.080016e-02	ci left: 5.527601e-03	ci right 6.056409e-03	k: 1852	n:320000
Cons ci ratio: 1.831824e-03	ci left: 9.338259e-01	ci right 9.355412e-01	k: 299100	n:320000
KS ci ratio: 1.840470e-01	ci left: 1.285348e-03	ci right 1.548814e-03	k: 452	n:320000
PGBD1   320000 perm   107 sec   (2983 perm/sec)   p_kst 1.412500e-03   p_cons 9.346875e-01   p_joint 5.787500e-03

Joint ci ratio: 8.990985e-02	ci left: 5.469678e-03	ci right 5.987544e-03	k: 1889	n:330000
Cons ci ratio: 1.803983e-03	ci left: 9.338304e-01	ci right 9.355195e-01	k: 308444	n:330000
KS ci ratio: 1.816573e-01	ci left: 1.281097e-03	ci right 1.539907e-03	k: 464	n:330000
PGBD1   330000 perm   112 sec   (2946 perm/sec)   p_kst 1.406061e-03   p_cons 9.346788e-01   p_joint 5.724242e-03

Joint ci ratio: 9.441811e-02	ci left: 4.805877e-03	ci right 5.284971e-03	k: 1714	n:340000
Cons ci ratio: 1.777888e-03	ci left: 9.337993e-01	ci right 9.354639e-01	k: 317776	n:340000
KS ci ratio: 1.786099e-01	ci left: 1.288355e-03	ci right 1.543794e-03	k: 480	n:340000
PGBD1   340000 perm   117 sec   (2913 perm/sec)   p_kst 1.411765e-03   p_cons 9.346353e-01   p_joint 5.041176e-03

Joint ci ratio: 9.425939e-02	ci left: 4.685291e-03	ci right 5.151535e-03	k: 1720	n:350000
Cons ci ratio: 1.750802e-03	ci left: 9.339167e-01	ci right 9.355561e-01	k: 327159	n:350000
KS ci ratio: 1.760660e-01	ci left: 1.289769e-03	ci right 1.541459e-03	k: 494	n:350000
PGBD1   350000 perm   122 sec   (2879 perm/sec)   p_kst 1.411429e-03   p_cons 9.347400e-01   p_joint 4.914286e-03

Joint ci ratio: 9.307775e-02	ci left: 4.674502e-03	ci right 5.133523e-03	k: 1764	n:360000
Cons ci ratio: 1.724835e-03	ci left: 9.340334e-01	ci right 9.356485e-01	k: 336544	n:360000
KS ci ratio: 1.739704e-01	ci left: 1.285815e-03	ci right 1.533433e-03	k: 506	n:360000
PGBD1   360000 perm   126 sec   (2847 perm/sec)   p_kst 1.405556e-03   p_cons 9.348444e-01   p_joint 4.900000e-03

Joint ci ratio: 9.098407e-02	ci left: 4.764695e-03	ci right 5.221488e-03	k: 1846	n:370000
Cons ci ratio: 1.698513e-03	ci left: 9.342498e-01	ci right 9.358407e-01	k: 345968	n:370000
KS ci ratio: 1.721141e-01	ci left: 1.279505e-03	ci right 1.523005e-03	k: 517	n:370000
PGBD1   370000 perm   131 sec   (2816 perm/sec)   p_kst 1.397297e-03   p_cons 9.350486e-01   p_joint 4.989189e-03

Joint ci ratio: 9.086657e-02	ci left: 4.652155e-03	ci right 5.097552e-03	k: 1851	n:380000
Cons ci ratio: 1.675996e-03	ci left: 9.342618e-01	ci right 9.358315e-01	k: 355319	n:380000
KS ci ratio: 1.708016e-01	ci left: 1.265982e-03	ci right 1.504883e-03	k: 525	n:380000
PGBD1   380000 perm   137 sec   (2783 perm/sec)   p_kst 1.381579e-03   p_cons 9.350500e-01   p_joint 4.871053e-03

Joint ci ratio: 8.949876e-02	ci left: 4.675729e-03	ci right 5.116292e-03	k: 1908	n:390000
Cons ci ratio: 1.654595e-03	ci left: 9.342553e-01	ci right 9.358049e-01	k: 364663	n:390000
KS ci ratio: 1.681059e-01	ci left: 1.275263e-03	ci right 1.511732e-03	k: 542	n:390000
PGBD1   390000 perm   142 sec   (2752 perm/sec)   p_kst 1.389744e-03   p_cons 9.350333e-01   p_joint 4.892308e-03

Joint ci ratio: 8.853096e-02	ci left: 4.661497e-03	ci right 5.095723e-03	k: 1950	n:400000
Cons ci ratio: 1.633625e-03	ci left: 9.342769e-01	ci right 9.358068e-01	k: 374018	n:400000
KS ci ratio: 1.661292e-01	ci left: 1.274522e-03	ci right 1.507797e-03	k: 555	n:400000
PGBD1   400000 perm   147 sec   (2722 perm/sec)   p_kst 1.387500e-03   p_cons 9.350450e-01   p_joint 4.875000e-03

Joint ci ratio: 8.750568e-02	ci left: 4.657527e-03	ci right 5.086102e-03	k: 1996	n:410000
Cons ci ratio: 1.613691e-03	ci left: 9.342779e-01	ci right 9.357891e-01	k: 383365	n:410000
KS ci ratio: 1.639324e-01	ci left: 1.278511e-03	ci right 1.509116e-03	k: 570	n:410000
PGBD1   410000 perm   152 sec   (2693 perm/sec)   p_kst 1.390244e-03   p_cons 9.350366e-01   p_joint 4.868293e-03

Joint ci ratio: 8.897763e-02	ci left: 4.395260e-03	ci right 4.806858e-03	k: 1931	n:420000
Cons ci ratio: 1.594406e-03	ci left: 9.342837e-01	ci right 9.357769e-01	k: 392714	n:420000
KS ci ratio: 1.615447e-01	ci left: 1.286898e-03	ci right 1.515307e-03	k: 587	n:420000
PGBD1   420000 perm   158 sec   (2664 perm/sec)   p_kst 1.397619e-03   p_cons 9.350333e-01   p_joint 4.597619e-03

Joint ci ratio: 8.827380e-02	ci left: 4.363537e-03	ci right 4.768765e-03	k: 1962	n:430000
Cons ci ratio: 1.576009e-03	ci left: 9.342731e-01	ci right 9.357490e-01	k: 402056	n:430000
KS ci ratio: 1.599215e-01	ci left: 1.283755e-03	ci right 1.509096e-03	k: 599	n:430000
PGBD1   430000 perm   163 sec   (2637 perm/sec)   p_kst 1.393023e-03   p_cons 9.350140e-01   p_joint 4.562791e-03

Joint ci ratio: 7.529275e-02	ci left: 5.892123e-03	ci right 6.355326e-03	k: 2693	n:440000
Cons ci ratio: 1.631470e-03	ci left: 9.284222e-01	ci right 9.299403e-01	k: 408841	n:440000
KS ci ratio: 1.586059e-01	ci left: 1.276400e-03	ci right 1.498432e-03	k: 609	n:440000
PGBD1   440000 perm   169 sec   (2610 perm/sec)   p_kst 1.384091e-03   p_cons 9.291841e-01   p_joint 6.120455e-03

Joint ci ratio: 7.508789e-02	ci left: 5.793883e-03	ci right 6.248069e-03	k: 2708	n:450000
Cons ci ratio: 1.614462e-03	ci left: 9.283306e-01	ci right 9.298328e-01	k: 418088	n:450000
KS ci ratio: 1.556962e-01	ci left: 1.297137e-03	ci right 1.518251e-03	k: 632	n:450000
PGBD1   450000 perm   174 sec   (2583 perm/sec)   p_kst 1.404444e-03   p_cons 9.290844e-01   p_joint 6.017778e-03

Joint ci ratio: 7.561402e-02	ci left: 5.588987e-03	ci right 6.030316e-03	k: 2671	n:460000
Cons ci ratio: 1.596523e-03	ci left: 9.283633e-01	ci right 9.298487e-01	k: 427390	n:460000
KS ci ratio: 1.536462e-01	ci left: 1.304465e-03	ci right 1.523631e-03	k: 649	n:460000
PGBD1   460000 perm   180 sec   (2556 perm/sec)   p_kst 1.410870e-03   p_cons 9.291087e-01   p_joint 5.806522e-03

Joint ci ratio: 7.488932e-02	ci left: 5.578628e-03	ci right 6.014732e-03	k: 2723	n:470000
Cons ci ratio: 1.580495e-03	ci left: 9.282834e-01	ci right 9.297538e-01	k: 436640	n:470000
KS ci ratio: 1.527103e-01	ci left: 1.293079e-03	ci right 1.508887e-03	k: 657	n:470000
PGBD1   470000 perm   186 sec   (2530 perm/sec)   p_kst 1.397872e-03   p_cons 9.290213e-01   p_joint 5.793617e-03

Joint ci ratio: 7.558058e-02	ci left: 5.362221e-03	ci right 5.785447e-03	k: 2674	n:480000
Cons ci ratio: 1.564172e-03	ci left: 9.282719e-01	ci right 9.297271e-01	k: 445921	n:480000
KS ci ratio: 1.503292e-01	ci left: 1.308232e-03	ci right 1.522859e-03	k: 678	n:480000
PGBD1   480000 perm   192 sec   (2505 perm/sec)   p_kst 1.412500e-03   p_cons 9.290021e-01   p_joint 5.570833e-03

Joint ci ratio: 7.000058e-02	ci left: 6.136511e-03	ci right 6.583642e-03	k: 3115	n:490000
Cons ci ratio: 1.548105e-03	ci left: 9.282814e-01	ci right 9.297216e-01	k: 455212	n:490000
KS ci ratio: 1.479503e-01	ci left: 1.324757e-03	ci right 1.538351e-03	k: 700	n:490000
PGBD1   490000 perm   198 sec   (2480 perm/sec)   p_kst 1.428571e-03   p_cons 9.290041e-01   p_joint 6.357143e-03

Joint ci ratio: 6.934745e-02	ci left: 6.129724e-03	ci right 6.572025e-03	k: 3174	n:500000
Cons ci ratio: 1.532988e-03	ci left: 9.282505e-01	ci right 9.296765e-01	k: 464483	n:500000
KS ci ratio: 1.462899e-01	ci left: 1.329084e-03	ci right 1.540761e-03	k: 716	n:500000
PGBD1   500000 perm   204 sec   (2456 perm/sec)   p_kst 1.432000e-03   p_cons 9.289660e-01   p_joint 6.348000e-03

Joint ci ratio: 6.926404e-02	ci left: 6.024937e-03	ci right 6.459132e-03	k: 3182	n:510000
Cons ci ratio: 1.518485e-03	ci left: 9.282051e-01	ci right 9.296175e-01	k: 473746	n:510000
KS ci ratio: 1.447832e-01	ci left: 1.331364e-03	ci right 1.541032e-03	k: 731	n:510000
PGBD1   510000 perm   210 sec   (2432 perm/sec)   p_kst 1.433333e-03   p_cons 9.289137e-01   p_joint 6.239216e-03

Joint ci ratio: 6.897449e-02	ci left: 5.960092e-03	ci right 6.387746e-03	k: 3209	n:520000
Cons ci ratio: 1.503487e-03	ci left: 9.282406e-01	ci right 9.296392e-01	k: 483050	n:520000
KS ci ratio: 1.439020e-01	ci left: 1.322443e-03	ci right 1.529329e-03	k: 740	n:520000
PGBD1   520000 perm   216 sec   (2409 perm/sec)   p_kst 1.423077e-03   p_cons 9.289423e-01   p_joint 6.171154e-03

Joint ci ratio: 6.832837e-02	ci left: 5.960756e-03	ci right 6.384293e-03	k: 3270	n:530000
Cons ci ratio: 1.489138e-03	ci left: 9.282560e-01	ci right 9.296412e-01	k: 492344	n:530000
KS ci ratio: 1.428461e-01	ci left: 1.317502e-03	ci right 1.521973e-03	k: 751	n:530000
PGBD1   530000 perm   222 sec   (2386 perm/sec)   p_kst 1.416981e-03   p_cons 9.289509e-01   p_joint 6.169811e-03

Joint ci ratio: 6.780253e-02	ci left: 5.943206e-03	ci right 6.362119e-03	k: 3321	n:540000
Cons ci ratio: 1.475337e-03	ci left: 9.282578e-01	ci right 9.296302e-01	k: 501631	n:540000
KS ci ratio: 1.418131e-01	ci left: 1.312748e-03	ci right 1.514884e-03	k: 762	n:540000
PGBD1   540000 perm   228 sec   (2364 perm/sec)   p_kst 1.411111e-03   p_cons 9.289463e-01   p_joint 6.150000e-03

Joint ci ratio: 6.862158e-02	ci left: 5.695724e-03	ci right 6.102235e-03	k: 3243	n:550000
Cons ci ratio: 1.461409e-03	ci left: 9.283053e-01	ci right 9.296647e-01	k: 510943	n:550000
KS ci ratio: 1.404392e-01	ci left: 1.315190e-03	ci right 1.515576e-03	k: 777	n:550000
PGBD1   550000 perm   235 sec   (2342 perm/sec)   p_kst 1.412727e-03   p_cons 9.289873e-01   p_joint 5.896364e-03

Joint ci ratio: 6.785113e-02	ci left: 5.723905e-03	ci right 6.127660e-03	k: 3317	n:560000
Cons ci ratio: 1.448162e-03	ci left: 9.283242e-01	ci right 9.296713e-01	k: 520240	n:560000
KS ci ratio: 1.388418e-01	ci left: 1.322725e-03	ci right 1.521776e-03	k: 795	n:560000
PGBD1   560000 perm   241 sec   (2321 perm/sec)   p_kst 1.419643e-03   p_cons 9.290000e-01   p_joint 5.923214e-03

Joint ci ratio: 6.759899e-02	ci left: 5.666597e-03	ci right 6.064766e-03	k: 3342	n:570000
Cons ci ratio: 1.434448e-03	ci left: 9.284183e-01	ci right 9.297528e-01	k: 529580	n:570000
KS ci ratio: 1.377219e-01	ci left: 1.321537e-03	ci right 1.518674e-03	k: 808	n:570000
PGBD1   570000 perm   248 sec   (2300 perm/sec)   p_kst 1.417544e-03   p_cons 9.290877e-01   p_joint 5.863158e-03

Joint ci ratio: 6.700033e-02	ci left: 5.670605e-03	ci right 6.065390e-03	k: 3402	n:580000
Cons ci ratio: 1.421970e-03	ci left: 9.284295e-01	ci right 9.297524e-01	k: 538874	n:580000
KS ci ratio: 1.365455e-01	ci left: 1.322062e-03	ci right 1.517456e-03	k: 822	n:580000
PGBD1   580000 perm   254 sec   (2280 perm/sec)   p_kst 1.417241e-03   p_cons 9.290931e-01   p_joint 5.865517e-03

Joint ci ratio: 6.261088e-02	ci left: 6.393297e-03	ci right 6.808180e-03	k: 3893	n:590000
Cons ci ratio: 1.409667e-03	ci left: 9.284541e-01	ci right 9.297655e-01	k: 548176	n:590000
KS ci ratio: 1.355611e-01	ci left: 1.319300e-03	ci right 1.512767e-03	k: 834	n:590000
PGBD1   590000 perm   262 sec   (2255 perm/sec)   p_kst 1.413559e-03   p_cons 9.291119e-01   p_joint 6.598305e-03

Joint ci ratio: 6.313042e-02	ci left: 6.183372e-03	ci right 6.588083e-03	k: 3830	n:600000
Cons ci ratio: 1.398774e-03	ci left: 9.283740e-01	ci right 9.296752e-01	k: 557416	n:600000
KS ci ratio: 1.345976e-01	ci left: 1.316636e-03	ci right 1.508230e-03	k: 846	n:600000
PGBD1   600000 perm   268 sec   (2235 perm/sec)   p_kst 1.410000e-03   p_cons 9.290267e-01   p_joint 6.383333e-03

Joint ci ratio: 6.340076e-02	ci left: 6.030361e-03	ci right 6.426809e-03	k: 3798	n:610000
Cons ci ratio: 1.386662e-03	ci left: 9.284366e-01	ci right 9.297265e-01	k: 566741	n:610000
KS ci ratio: 1.329587e-01	ci left: 1.328326e-03	ci right 1.519082e-03	k: 867	n:610000
PGBD1   610000 perm   275 sec   (2216 perm/sec)   p_kst 1.421311e-03   p_cons 9.290836e-01   p_joint 6.226230e-03

Joint ci ratio: 6.393098e-02	ci left: 5.834671e-03	ci right 6.221580e-03	k: 3736	n:620000
Cons ci ratio: 1.375296e-03	ci left: 9.284551e-01	ci right 9.297344e-01	k: 576040	n:620000
KS ci ratio: 1.318992e-01	ci left: 1.328734e-03	ci right 1.517909e-03	k: 881	n:620000
PGBD1   620000 perm   282 sec   (2196 perm/sec)   p_kst 1.420968e-03   p_cons 9.290968e-01   p_joint 6.025806e-03

Joint ci ratio: 6.501027e-02	ci left: 5.551501e-03	ci right 5.926082e-03	k: 3614	n:630000
Cons ci ratio: 1.364978e-03	ci left: 9.283981e-01	ci right 9.296678e-01	k: 585292	n:630000
KS ci ratio: 1.305732e-01	ci left: 1.335277e-03	ci right 1.523324e-03	k: 899	n:630000
PGBD1   630000 perm   289 sec   (2177 perm/sec)   p_kst 1.426984e-03   p_cons 9.290349e-01   p_joint 5.736508e-03

Joint ci ratio: 6.680212e-02	ci left: 5.172742e-03	ci right 5.531758e-03	k: 3424	n:640000
Cons ci ratio: 1.353876e-03	ci left: 9.284418e-01	ci right 9.297012e-01	k: 594607	n:640000
KS ci ratio: 1.293569e-01	ci left: 1.340112e-03	ci right 1.526947e-03	k: 916	n:640000
PGBD1   640000 perm   297 sec   (2158 perm/sec)   p_kst 1.431250e-03   p_cons 9.290734e-01   p_joint 5.350000e-03

Joint ci ratio: 6.630079e-02	ci left: 5.171830e-03	ci right 5.527985e-03	k: 3476	n:650000
Cons ci ratio: 1.343684e-03	ci left: 9.284209e-01	ci right 9.296707e-01	k: 603881	n:650000
KS ci ratio: 1.283807e-01	ci left: 1.340339e-03	ci right 1.525688e-03	k: 930	n:650000
PGBD1   650000 perm   304 sec   (2139 perm/sec)   p_kst 1.430769e-03   p_cons 9.290477e-01   p_joint 5.347692e-03

Joint ci ratio: 6.626518e-02	ci left: 5.099423e-03	ci right 5.450396e-03	k: 3480	n:660000
Cons ci ratio: 1.333105e-03	ci left: 9.284614e-01	ci right 9.297015e-01	k: 613195	n:660000
KS ci ratio: 1.273587e-01	ci left: 1.342032e-03	ci right 1.526025e-03	k: 945	n:660000
PGBD1   660000 perm   311 sec   (2121 perm/sec)   p_kst 1.431818e-03   p_cons 9.290833e-01   p_joint 5.272727e-03

Joint ci ratio: 6.672211e-02	ci left: 4.954317e-03	ci right 5.297745e-03	k: 3433	n:670000
Cons ci ratio: 1.323266e-03	ci left: 9.284514e-01	ci right 9.296822e-01	k: 622476	n:670000
KS ci ratio: 1.262293e-01	ci left: 1.346570e-03	ci right 1.529426e-03	k: 962	n:670000
PGBD1   670000 perm   319 sec   (2103 perm/sec)   p_kst 1.435821e-03   p_cons 9.290687e-01   p_joint 5.123881e-03

Joint ci ratio: 6.637585e-02	ci left: 4.933518e-03	ci right 5.273661e-03	k: 3469	n:680000
Cons ci ratio: 1.313495e-03	ci left: 9.284564e-01	ci right 9.296782e-01	k: 631767	n:680000
KS ci ratio: 1.253217e-01	ci left: 1.346708e-03	ci right 1.528170e-03	k: 976	n:680000
PGBD1   680000 perm   326 sec   (2086 perm/sec)   p_kst 1.435294e-03   p_cons 9.290691e-01   p_joint 5.101471e-03

Joint ci ratio: 6.591220e-02	ci left: 4.931857e-03	ci right 5.269420e-03	k: 3518	n:690000
Cons ci ratio: 1.303823e-03	ci left: 9.284730e-01	ci right 9.296857e-01	k: 641066	n:690000
KS ci ratio: 1.242452e-01	ci left: 1.351059e-03	ci right 1.531429e-03	k: 993	n:690000
PGBD1   690000 perm   334 sec   (2069 perm/sec)   p_kst 1.439130e-03   p_cons 9.290812e-01   p_joint 5.098551e-03

Joint ci ratio: 6.566192e-02	ci left: 4.899336e-03	ci right 5.233351e-03	k: 3545	n:700000
Cons ci ratio: 1.294572e-03	ci left: 9.284676e-01	ci right 9.296717e-01	k: 650350	n:700000
KS ci ratio: 1.231959e-01	ci left: 1.355293e-03	ci right 1.534588e-03	k: 1010	n:700000
PGBD1   700000 perm   341 sec   (2052 perm/sec)   p_kst 1.442857e-03   p_cons 9.290714e-01   p_joint 5.064286e-03

Joint ci ratio: 6.050364e-02	ci left: 5.699591e-03	ci right 6.056572e-03	k: 4172	n:710000
Cons ci ratio: 1.285282e-03	ci left: 9.284864e-01	ci right 9.296819e-01	k: 659651	n:710000
KS ci ratio: 1.216407e-01	ci left: 1.371703e-03	ci right 1.550714e-03	k: 1036	n:710000
PGBD1   710000 perm   349 sec   (2035 perm/sec)   p_kst 1.459155e-03   p_cons 9.290859e-01   p_joint 5.876056e-03

Joint ci ratio: 6.004473e-02	ci left: 5.707980e-03	ci right 6.062680e-03	k: 4236	n:720000
Cons ci ratio: 1.276229e-03	ci left: 9.285006e-01	ci right 9.296877e-01	k: 668949	n:720000
KS ci ratio: 1.203700e-01	ci left: 1.382283e-03	ci right 1.560656e-03	k: 1058	n:720000
PGBD1   720000 perm   357 sec   (2018 perm/sec)   p_kst 1.469444e-03   p_cons 9.290958e-01   p_joint 5.883333e-03

Joint ci ratio: 6.113043e-02	ci left: 5.430096e-03	ci right 5.773845e-03	k: 4088	n:730000
Cons ci ratio: 1.267008e-03	ci left: 9.285515e-01	ci right 9.297300e-01	k: 678274	n:730000
KS ci ratio: 1.198060e-01	ci left: 1.376634e-03	ci right 1.553387e-03	k: 1068	n:730000
PGBD1   730000 perm   365 sec   (2002 perm/sec)   p_kst 1.463014e-03   p_cons 9.291425e-01   p_joint 5.600000e-03

Joint ci ratio: 6.093080e-02	ci left: 5.392643e-03	ci right 5.732867e-03	k: 4115	n:740000
Cons ci ratio: 1.258450e-03	ci left: 9.285522e-01	ci right 9.297228e-01	k: 687563	n:740000
KS ci ratio: 1.187004e-01	ci left: 1.384252e-03	ci right 1.560228e-03	k: 1088	n:740000
PGBD1   740000 perm   373 sec   (1986 perm/sec)   p_kst 1.470270e-03   p_cons 9.291392e-01   p_joint 5.560811e-03

Joint ci ratio: 5.902387e-02	ci left: 5.674054e-03	ci right 6.020447e-03	k: 4384	n:750000
Cons ci ratio: 1.250366e-03	ci left: 9.285208e-01	ci right 9.296839e-01	k: 696828	n:750000
KS ci ratio: 1.177844e-01	ci left: 1.387792e-03	ci right 1.562762e-03	k: 1105	n:750000
PGBD1   750000 perm   381 sec   (1971 perm/sec)   p_kst 1.473333e-03   p_cons 9.291040e-01   p_joint 5.845333e-03

Joint ci ratio: 5.967288e-02	ci left: 5.477530e-03	ci right 5.815729e-03	k: 4290	n:760000
Cons ci ratio: 1.241716e-03	ci left: 9.285669e-01	ci right 9.297219e-01	k: 706151	n:760000
KS ci ratio: 1.169415e-01	ci left: 1.389966e-03	ci right 1.563869e-03	k: 1121	n:760000
PGBD1   760000 perm   388 sec   (1956 perm/sec)   p_kst 1.475000e-03   p_cons 9.291461e-01   p_joint 5.644737e-03

Joint ci ratio: 5.496439e-02	ci left: 6.381921e-03	ci right 6.743884e-03	k: 5052	n:770000
Cons ci ratio: 1.233766e-03	ci left: 9.285558e-01	ci right 9.297034e-01	k: 715431	n:770000
KS ci ratio: 1.159634e-01	ci left: 1.395871e-03	ci right 1.568953e-03	k: 1140	n:770000
PGBD1   770000 perm   397 sec   (1941 perm/sec)   p_kst 1.480519e-03   p_cons 9.291312e-01   p_joint 6.561039e-03

Joint ci ratio: 5.568672e-02	ci left: 6.136984e-03	ci right 6.489775e-03	k: 4923	n:780000
Cons ci ratio: 1.225811e-03	ci left: 9.285616e-01	ci right 9.297018e-01	k: 724724	n:780000
KS ci ratio: 1.155092e-01	ci left: 1.389180e-03	ci right 1.560711e-03	k: 1149	n:780000
PGBD1   780000 perm   405 sec   (1927 perm/sec)   p_kst 1.473077e-03   p_cons 9.291333e-01   p_joint 6.311538e-03

Joint ci ratio: 5.653865e-02	ci left: 5.877061e-03	ci right 6.220247e-03	k: 4777	n:790000
Cons ci ratio: 1.217482e-03	ci left: 9.286246e-01	ci right 9.297571e-01	k: 734062	n:790000
KS ci ratio: 1.149114e-01	ci left: 1.386347e-03	ci right 1.556582e-03	k: 1161	n:790000
PGBD1   790000 perm   413 sec   (1912 perm/sec)   p_kst 1.469620e-03   p_cons 9.291924e-01   p_joint 6.046835e-03

Joint ci ratio: 5.682263e-02	ci left: 5.745669e-03	ci right 6.082924e-03	k: 4730	n:800000
Cons ci ratio: 1.210031e-03	ci left: 9.286082e-01	ci right 9.297337e-01	k: 743338	n:800000
KS ci ratio: 1.143716e-01	ci left: 1.382374e-03	ci right 1.551269e-03	k: 1172	n:800000
PGBD1   800000 perm   422 sec   (1898 perm/sec)   p_kst 1.465000e-03   p_cons 9.291725e-01   p_joint 5.912500e-03

Joint ci ratio: 5.651910e-02	ci left: 5.736805e-03	ci right 6.071682e-03	k: 4781	n:810000
Cons ci ratio: 1.202287e-03	ci left: 9.286393e-01	ci right 9.297577e-01	k: 752652	n:810000
KS ci ratio: 1.137912e-01	ci left: 1.379699e-03	ci right 1.547355e-03	k: 1184	n:810000
PGBD1   810000 perm   430 sec   (1884 perm/sec)   p_kst 1.461728e-03   p_cons 9.292000e-01   p_joint 5.902469e-03

Joint ci ratio: 5.764747e-02	ci left: 5.445633e-03	ci right 5.770070e-03	k: 4597	n:820000
Cons ci ratio: 1.195078e-03	ci left: 9.286268e-01	ci right 9.297384e-01	k: 761931	n:820000
KS ci ratio: 1.131722e-01	ci left: 1.378277e-03	ci right 1.544789e-03	k: 1197	n:820000
PGBD1   820000 perm   438 sec   (1874 perm/sec)   p_kst 1.459756e-03   p_cons 9.291841e-01   p_joint 5.606098e-03

Joint ci ratio: 5.739891e-02	ci left: 5.427521e-03	ci right 5.749438e-03	k: 4637	n:830000
Cons ci ratio: 1.188148e-03	ci left: 9.285977e-01	ci right 9.297029e-01	k: 771196	n:830000
KS ci ratio: 1.125167e-01	ci left: 1.378063e-03	ci right 1.543520e-03	k: 1211	n:830000
PGBD1   830000 perm   445 sec   (1865 perm/sec)   p_kst 1.459036e-03   p_cons 9.291518e-01   p_joint 5.586747e-03

Joint ci ratio: 5.712283e-02	ci left: 5.415711e-03	ci right 5.735332e-03	k: 4682	n:840000
Cons ci ratio: 1.181135e-03	ci left: 9.285921e-01	ci right 9.296907e-01	k: 780480	n:840000
KS ci ratio: 1.119640e-01	ci left: 1.375542e-03	ci right 1.539832e-03	k: 1223	n:840000
PGBD1   840000 perm   453 sec   (1856 perm/sec)   p_kst 1.455952e-03   p_cons 9.291429e-01   p_joint 5.573810e-03

Joint ci ratio: 5.716155e-02	ci left: 5.345033e-03	ci right 5.660704e-03	k: 4676	n:850000
Cons ci ratio: 1.174150e-03	ci left: 9.285972e-01	ci right 9.296893e-01	k: 789773	n:850000
KS ci ratio: 1.112392e-01	ci left: 1.377657e-03	ci right 1.541065e-03	k: 1239	n:850000
PGBD1   850000 perm   460 sec   (1847 perm/sec)   p_kst 1.457647e-03   p_cons 9.291447e-01   p_joint 5.501176e-03

Joint ci ratio: 5.508767e-02	ci left: 5.692202e-03	ci right 6.015792e-03	k: 5033	n:860000
Cons ci ratio: 1.167071e-03	ci left: 9.286267e-01	ci right 9.297123e-01	k: 799087	n:860000
KS ci ratio: 1.105283e-01	ci left: 1.379727e-03	ci right 1.542266e-03	k: 1255	n:860000
PGBD1   860000 perm   468 sec   (1838 perm/sec)   p_kst 1.459302e-03   p_cons 9.291709e-01   p_joint 5.852326e-03

Joint ci ratio: 5.478388e-02	ci left: 5.690257e-03	ci right 6.011897e-03	k: 5089	n:870000
Cons ci ratio: 1.160230e-03	ci left: 9.286429e-01	ci right 9.297221e-01	k: 808390	n:870000
KS ci ratio: 1.099175e-01	ci left: 1.379516e-03	ci right 1.541074e-03	k: 1269	n:870000
PGBD1   870000 perm   476 sec   (1829 perm/sec)   p_kst 1.458621e-03   p_cons 9.291839e-01   p_joint 5.849425e-03

Joint ci ratio: 5.481822e-02	ci left: 5.618865e-03	ci right 5.936674e-03	k: 5083	n:880000
Cons ci ratio: 1.153697e-03	ci left: 9.286370e-01	ci right 9.297101e-01	k: 817674	n:880000
KS ci ratio: 1.092315e-01	ci left: 1.381523e-03	ci right 1.542242e-03	k: 1285	n:880000
PGBD1   880000 perm   484 sec   (1820 perm/sec)   p_kst 1.460227e-03   p_cons 9.291750e-01   p_joint 5.776136e-03

Joint ci ratio: 5.466342e-02	ci left: 5.587868e-03	ci right 5.903003e-03	k: 5112	n:890000
Cons ci ratio: 1.147116e-03	ci left: 9.286494e-01	ci right 9.297164e-01	k: 826974	n:890000
KS ci ratio: 1.086836e-01	ci left: 1.380209e-03	ci right 1.539918e-03	k: 1298	n:890000
PGBD1   890000 perm   491 sec   (1811 perm/sec)   p_kst 1.458427e-03   p_cons 9.291843e-01   p_joint 5.743820e-03

Joint ci ratio: 5.857812e-02	ci left: 4.806045e-03	ci right 5.097155e-03	k: 4455	n:900000
Cons ci ratio: 1.141042e-03	ci left: 9.286158e-01	ci right 9.296770e-01	k: 836233	n:900000
KS ci ratio: 1.137996e-01	ci left: 1.241724e-03	ci right 1.392626e-03	k: 1184	n:900000
PGBD1   900000 perm   499 sec   (1802 perm/sec)   p_kst 1.315556e-03   p_cons 9.291478e-01   p_joint 4.950000e-03

Joint ci ratio: 5.826520e-02	ci left: 4.805208e-03	ci right 5.094660e-03	k: 4503	n:910000
Cons ci ratio: 1.134854e-03	ci left: 9.286071e-01	ci right 9.296627e-01	k: 845514	n:910000
KS ci ratio: 1.132752e-01	ci left: 1.239823e-03	ci right 1.389753e-03	k: 1195	n:910000
PGBD1   910000 perm   508 sec   (1793 perm/sec)   p_kst 1.313187e-03   p_cons 9.291363e-01   p_joint 4.948352e-03

Joint ci ratio: 5.794444e-02	ci left: 4.806536e-03	ci right 5.094421e-03	k: 4553	n:920000
Cons ci ratio: 1.128533e-03	ci left: 9.286260e-01	ci right 9.296756e-01	k: 854820	n:920000
KS ci ratio: 1.126645e-01	ci left: 1.240078e-03	ci right 1.389177e-03	k: 1208	n:920000
PGBD1   920000 perm   516 sec   (1784 perm/sec)   p_kst 1.313043e-03   p_cons 9.291522e-01   p_joint 4.948913e-03

Joint ci ratio: 5.764780e-02	ci left: 4.804660e-03	ci right 5.090910e-03	k: 4600	n:930000
Cons ci ratio: 1.122601e-03	ci left: 9.286110e-01	ci right 9.296551e-01	k: 864095	n:930000
KS ci ratio: 1.120636e-01	ci left: 1.240330e-03	ci right 1.388611e-03	k: 1221	n:930000
PGBD1   930000 perm   524 sec   (1776 perm/sec)   p_kst 1.312903e-03   p_cons 9.291344e-01   p_joint 4.946237e-03

Joint ci ratio: 5.735567e-02	ci left: 4.802827e-03	ci right 5.087471e-03	k: 4647	n:940000
Cons ci ratio: 1.116842e-03	ci left: 9.285868e-01	ci right 9.296255e-01	k: 873361	n:940000
KS ci ratio: 1.116989e-01	ci left: 1.235407e-03	ci right 1.382587e-03	k: 1229	n:940000
PGBD1   940000 perm   532 sec   (1767 perm/sec)   p_kst 1.307447e-03   p_cons 9.291074e-01   p_joint 4.943617e-03

Joint ci ratio: 5.909426e-02	ci left: 4.474250e-03	ci right 4.747732e-03	k: 4379	n:950000
Cons ci ratio: 1.111002e-03	ci left: 9.285831e-01	ci right 9.296164e-01	k: 882646	n:950000
KS ci ratio: 1.112478e-01	ci left: 1.232635e-03	ci right 1.378853e-03	k: 1239	n:950000
PGBD1   950000 perm   540 sec   (1758 perm/sec)   p_kst 1.304211e-03   p_cons 9.291011e-01   p_joint 4.609474e-03

Joint ci ratio: 5.881976e-02	ci left: 4.469721e-03	ci right 4.741614e-03	k: 4420	n:960000
Cons ci ratio: 1.105323e-03	ci left: 9.285712e-01	ci right 9.295991e-01	k: 891923	n:960000
KS ci ratio: 1.106250e-01	ci left: 1.233974e-03	ci right 1.379478e-03	k: 1253	n:960000
PGBD1   960000 perm   549 sec   (1749 perm/sec)   p_kst 1.305208e-03   p_cons 9.290865e-01   p_joint 4.604167e-03

Joint ci ratio: 5.866805e-02	ci left: 4.447003e-03	ci right 4.716793e-03	k: 4443	n:970000
Cons ci ratio: 1.099515e-03	ci left: 9.285854e-01	ci right 9.296079e-01	k: 901225	n:970000
KS ci ratio: 1.101867e-01	ci left: 1.231277e-03	ci right 1.375851e-03	k: 1263	n:970000
PGBD1   970000 perm   557 sec   (1741 perm/sec)   p_kst 1.302062e-03   p_cons 9.290979e-01   p_joint 4.580412e-03

Joint ci ratio: 5.050688e-02	ci left: 5.954852e-03	ci right 6.264405e-03	k: 5986	n:980000
Cons ci ratio: 1.093806e-03	ci left: 9.285983e-01	ci right 9.296155e-01	k: 910526	n:980000
KS ci ratio: 1.045048e-01	ci left: 1.358735e-03	ci right 1.509542e-03	k: 1404	n:980000
PGBD1   980000 perm   566 sec   (1732 perm/sec)   p_kst 1.432653e-03   p_cons 9.291082e-01   p_joint 6.108163e-03

Joint ci ratio: 4.840552e-02	ci left: 6.421479e-03	ci right 6.741014e-03	k: 6514	n:990000
Cons ci ratio: 1.088468e-03	ci left: 9.285764e-01	ci right 9.295887e-01	k: 919793	n:990000
KS ci ratio: 1.040615e-01	ci left: 1.356816e-03	ci right 1.506732e-03	k: 1416	n:990000
PGBD1   990000 perm   574 sec   (1723 perm/sec)   p_kst 1.430303e-03   p_cons 9.290838e-01   p_joint 6.579798e-03

Joint ci ratio: 4.816218e-02	ci left: 6.422468e-03	ci right 6.740401e-03	k: 6580	n:1000000
Cons ci ratio: 1.083266e-03	ci left: 9.285481e-01	ci right 9.295555e-01	k: 929053	n:1000000
KS ci ratio: 1.034427e-01	ci left: 1.359806e-03	ci right 1.509105e-03	k: 1433	n:1000000
PGBD1   1000000 perm   583 sec   (1715 perm/sec)   p_kst 1.433000e-03   p_cons 9.290530e-01   p_joint 6.580000e-03

Joint ci ratio: 4.793699e-02	ci left: 6.419527e-03	ci right 6.735788e-03	k: 6642	n:1010000
Cons ci ratio: 1.078226e-03	ci left: 9.285093e-01	ci right 9.295120e-01	k: 938302	n:1010000
KS ci ratio: 1.027993e-01	ci left: 1.363705e-03	ci right 1.512445e-03	k: 1451	n:1010000
PGBD1   1010000 perm   592 sec   (1707 perm/sec)   p_kst 1.436634e-03   p_cons 9.290119e-01   p_joint 6.576238e-03

Joint ci ratio: 4.796399e-02	ci left: 6.349805e-03	ci right 6.662811e-03	k: 6635	n:1020000
Cons ci ratio: 1.072801e-03	ci left: 9.285274e-01	ci right 9.295250e-01	k: 947608	n:1020000
KS ci ratio: 1.024123e-01	ci left: 1.360843e-03	ci right 1.508678e-03	k: 1462	n:1020000
PGBD1   1020000 perm   601 sec   (1698 perm/sec)   p_kst 1.433333e-03   p_cons 9.290275e-01   p_joint 6.504902e-03

Joint ci ratio: 4.868321e-02	ci left: 6.103023e-03	ci right 6.408502e-03	k: 6442	n:1030000
Cons ci ratio: 1.068022e-03	ci left: 9.284751e-01	ci right 9.294682e-01	k: 956842	n:1030000
KS ci ratio: 1.020990e-01	ci left: 1.356145e-03	ci right 1.502992e-03	k: 1471	n:1030000
PGBD1   1030000 perm   610 sec   (1690 perm/sec)   p_kst 1.428155e-03   p_cons 9.289728e-01   p_joint 6.254369e-03

Joint ci ratio: 4.681297e-02	ci left: 6.540306e-03	ci right 6.854758e-03	k: 6964	n:1040000
Cons ci ratio: 1.062904e-03	ci left: 9.284739e-01	ci right 9.294622e-01	k: 966128	n:1040000
KS ci ratio: 1.017198e-01	ci left: 1.353413e-03	ci right 1.499387e-03	k: 1482	n:1040000
PGBD1   1040000 perm   618 sec   (1682 perm/sec)   p_kst 1.425000e-03   p_cons 9.289692e-01   p_joint 6.696154e-03

Joint ci ratio: 4.689247e-02	ci left: 6.456363e-03	ci right 6.767321e-03	k: 6941	n:1050000
Cons ci ratio: 1.057966e-03	ci left: 9.284593e-01	ci right 9.294431e-01	k: 975400	n:1050000
KS ci ratio: 1.013108e-01	ci left: 1.351661e-03	ci right 1.496826e-03	k: 1494	n:1050000
PGBD1   1050000 perm   627 sec   (1674 perm/sec)   p_kst 1.422857e-03   p_cons 9.289524e-01   p_joint 6.610476e-03

Joint ci ratio: 4.753574e-02	ci left: 6.222968e-03	ci right 6.526909e-03	k: 6756	n:1060000
Cons ci ratio: 1.052990e-03	ci left: 9.284583e-01	ci right 9.294374e-01	k: 984686	n:1060000
KS ci ratio: 1.006396e-01	ci left: 1.357301e-03	ci right 1.502049e-03	k: 1514	n:1060000
PGBD1   1060000 perm   636 sec   (1665 perm/sec)   p_kst 1.428302e-03   p_cons 9.289491e-01   p_joint 6.373585e-03

Joint ci ratio: 4.873843e-02	ci left: 5.862853e-03	ci right 6.156653e-03	k: 6429	n:1070000
Cons ci ratio: 1.048121e-03	ci left: 9.284527e-01	ci right 9.294272e-01	k: 993967	n:1070000
KS ci ratio: 1.003423e-01	ci left: 1.352816e-03	ci right 1.496634e-03	k: 1523	n:1070000
PGBD1   1070000 perm   646 sec   (1657 perm/sec)   p_kst 1.423364e-03   p_cons 9.289411e-01   p_joint 6.008411e-03

Joint ci ratio: 4.903215e-02	ci left: 5.739048e-03	ci right 6.028426e-03	k: 6353	n:1080000
Cons ci ratio: 1.043128e-03	ci left: 9.284713e-01	ci right 9.294412e-01	k: 1003274	n:1080000
KS ci ratio: 9.988453e-02	ci left: 1.352928e-03	ci right 1.496063e-03	k: 1537	n:1080000
PGBD1   1080000 perm   655 sec   (1650 perm/sec)   p_kst 1.423148e-03   p_cons 9.289574e-01   p_joint 5.882407e-03

Outputting figure to mutsig2_images.part000000000129/PGBD1.6_2454_1080000_0.0014231_0.92896_0.0058824.png
                gene_name: PGBD1
               theta_stop: 0.100 
                    nperm: 1080000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0057 
    ci_joint_bounds_right: 0.0060 

Current progress: 22 percent done.
PGCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
Cons ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
KS ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
PGCP   10000 perm   1 sec   (6758 perm/sec)   p_kst 8.697000e-01   p_cons 1.978000e-01   p_joint 5.174000e-01

Outputting figure to mutsig2_images.part000000000129/PGCP.6_1447_10000_0.8697_0.1978_0.5174.png
                gene_name: PGCP
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 24 percent done.
PGLYRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KS ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
PGLYRP3   10000 perm   2 sec   (6058 perm/sec)   p_kst 7.620000e-01   p_cons 9.141000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PGLYRP3.6_1054_10000_0.762_0.9141_1.png
                gene_name: PGLYRP3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
PFKFB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289737e-02	ci left: 5.769745e-01	ci right 5.963749e-01	k: 5867	n:10000
Cons ci ratio: 3.196322e-02	ci left: 5.909224e-01	ci right 6.102190e-01	k: 6006	n:10000
KS ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
PFKFB3   10000 perm   2 sec   (5789 perm/sec)   p_kst 6.239000e-01   p_cons 6.006000e-01   p_joint 5.867000e-01

Outputting figure to mutsig2_images.part000000000129/PFKFB3.5_1643_10000_0.6239_0.6006_0.5867.png
                gene_name: PFKFB3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
PFKFB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
Cons ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
KS ci ratio: 4.166204e-02	ci left: 4.596785e-01	ci right 4.793393e-01	k: 4695	n:10000
PFKFB4   10000 perm   2 sec   (5857 perm/sec)   p_kst 4.695000e-01   p_cons 1.964000e-01   p_joint 4.237000e-01

Outputting figure to mutsig2_images.part000000000129/PFKFB4.5_1466_10000_0.4695_0.1964_0.4237.png
                gene_name: PFKFB4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 31 percent done.
PFKM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
PFKM   10000 perm   2 sec   (5416 perm/sec)   p_kst 7.175000e-01   p_cons 7.730000e-02   p_joint 2.482000e-01

Joint ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
Cons ci ratio: 9.569699e-02	ci left: 7.368425e-02	ci right 8.113917e-02	k: 1547	n:20000
KS ci ratio: 1.707105e-02	ci left: 7.187543e-01	ci right 7.311802e-01	k: 14500	n:20000
PFKM   20000 perm   4 sec   (4852 perm/sec)   p_kst 7.250000e-01   p_cons 7.735000e-02   p_joint 2.283000e-01

Outputting figure to mutsig2_images.part000000000129/PFKM.5_2652_20000_0.725_0.07735_0.2283.png
                gene_name: PFKM
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
PGBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
PGBD5   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.610000e-02   p_cons 7.451000e-01   p_joint 1.557000e-01

Joint ci ratio: 8.111878e-02	ci left: 1.002931e-01	ci right 1.088222e-01	k: 2090	n:20000
Cons ci ratio: 1.624642e-02	ci left: 7.381937e-01	ci right 7.503352e-01	k: 14886	n:20000
KS ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
PGBD5   20000 perm   4 sec   (5168 perm/sec)   p_kst 7.425000e-02   p_cons 7.443000e-01   p_joint 1.045000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD5.5_1396_20000_0.07425_0.7443_0.1045.png
                gene_name: PGBD5
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
PGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
Cons ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
KS ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
PGK1   10000 perm   2 sec   (5572 perm/sec)   p_kst 2.743000e-01   p_cons 1.313000e-01   p_joint 1.437000e-01

Joint ci ratio: 5.812009e-02	ci left: 1.798868e-01	ci right 1.907049e-01	k: 3705	n:20000
Cons ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
KS ci ratio: 4.524428e-02	ci left: 2.666852e-01	ci right 2.790809e-01	k: 5457	n:20000
PGK1   20000 perm   4 sec   (5004 perm/sec)   p_kst 2.728500e-01   p_cons 1.310000e-01   p_joint 1.852500e-01

Outputting figure to mutsig2_images.part000000000129/PGK1.5_1298_20000_0.27285_0.131_0.18525.png
                gene_name: PGK1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 37 percent done.
PEG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
KS ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
PEG10   10000 perm   2 sec   (5786 perm/sec)   p_kst 2.960000e-02   p_cons 7.270000e-02   p_joint 3.730000e-02

Joint ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
Cons ci ratio: 9.727235e-02	ci left: 7.143550e-02	ci right 7.878860e-02	k: 1501	n:20000
KS ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
PEG10   20000 perm   4 sec   (5149 perm/sec)   p_kst 2.970000e-02   p_cons 7.505000e-02   p_joint 2.445000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 7.908205e-02	ci left: 7.269856e-02	ci right 7.871725e-02	k: 2270	n:30000
KS ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
PEG10   30000 perm   6 sec   (4909 perm/sec)   p_kst 2.923333e-02   p_cons 7.566667e-02   p_joint 1.430000e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 6.898148e-02	ci left: 7.211740e-02	ci right 7.729454e-02	k: 2987	n:40000
KS ci ratio: 1.141752e-01	ci left: 2.698836e-02	ci right 3.028054e-02	k: 1144	n:40000
PEG10   40000 perm   8 sec   (4750 perm/sec)   p_kst 2.860000e-02   p_cons 7.467500e-02   p_joint 2.172500e-02

Joint ci ratio: 1.345184e-01	ci left: 1.557557e-02	ci right 1.784104e-02	k: 834	n:50000
Cons ci ratio: 6.153893e-02	ci left: 7.274547e-02	ci right 7.738401e-02	k: 3752	n:50000
KS ci ratio: 1.015840e-01	ci left: 2.744900e-02	ci right 3.040603e-02	k: 1445	n:50000
PEG10   50000 perm   11 sec   (4617 perm/sec)   p_kst 2.890000e-02   p_cons 7.504000e-02   p_joint 1.668000e-02

Joint ci ratio: 1.019082e-01	ci left: 2.283886e-02	ci right 2.530747e-02	k: 1443	n:60000
Cons ci ratio: 5.614753e-02	ci left: 7.301988e-02	ci right 7.725466e-02	k: 4507	n:60000
KS ci ratio: 9.014967e-02	ci left: 2.917109e-02	ci right 3.194123e-02	k: 1832	n:60000
PEG10   60000 perm   13 sec   (4515 perm/sec)   p_kst 3.053333e-02   p_cons 7.511667e-02   p_joint 2.405000e-02

Joint ci ratio: 9.512303e-02	ci left: 2.255788e-02	ci right 2.482470e-02	k: 1657	n:70000
Cons ci ratio: 5.195231e-02	ci left: 7.325691e-02	ci right 7.717839e-02	k: 5264	n:70000
KS ci ratio: 8.313223e-02	ci left: 2.950442e-02	ci right 3.207752e-02	k: 2154	n:70000
PEG10   70000 perm   16 sec   (4430 perm/sec)   p_kst 3.077143e-02   p_cons 7.520000e-02   p_joint 2.367143e-02

Outputting figure to mutsig2_images.part000000000129/PEG10.4_2362_70000_0.030771_0.0752_0.023671.png
                gene_name: PEG10
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 39 percent done.
PER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
Cons ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
KS ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
PER2   10000 perm   2 sec   (5283 perm/sec)   p_kst 1.976000e-01   p_cons 5.572000e-01   p_joint 2.964000e-01

Outputting figure to mutsig2_images.part000000000129/PER2.4_3856_10000_0.1976_0.5572_0.2964.png
                gene_name: PER2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 41 percent done.
PES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
KS ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
PES1   10000 perm   2 sec   (5686 perm/sec)   p_kst 2.821000e-01   p_cons 6.001000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000129/PES1.4_1827_10000_0.2821_0.6001_0.4114.png
                gene_name: PES1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 43 percent done.
PFAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
KS ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
PFAS   10000 perm   2 sec   (4846 perm/sec)   p_kst 6.669000e-01   p_cons 8.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFAS.4_4125_10000_0.6669_0.8642_1.png
                gene_name: PFAS
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
PGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
KS ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
PGAP1   10000 perm   2 sec   (5288 perm/sec)   p_kst 8.223000e-01   p_cons 6.031000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000129/PGAP1.4_2877_10000_0.8223_0.6031_0.8663.png
                gene_name: PGAP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 47 percent done.
PGBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
Cons ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
KS ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
PGBD2   10000 perm   2 sec   (5765 perm/sec)   p_kst 3.780000e-02   p_cons 7.898000e-01   p_joint 9.090000e-02

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 1.406063e-02	ci left: 7.896909e-01	ci right 8.009231e-01	k: 15907	n:20000
KS ci ratio: 1.348270e-01	ci left: 3.780997e-02	ci right 4.332462e-02	k: 810	n:20000
PGBD2   20000 perm   4 sec   (5145 perm/sec)   p_kst 4.050000e-02   p_cons 7.953500e-01   p_joint 8.525000e-02

Joint ci ratio: 7.364037e-02	ci left: 8.311316e-02	ci right 8.950055e-02	k: 2588	n:30000
Cons ci ratio: 1.152093e-02	ci left: 7.895801e-01	ci right 7.987628e-01	k: 23826	n:30000
KS ci ratio: 1.099219e-01	ci left: 3.842706e-02	ci right 4.292912e-02	k: 1219	n:30000
PGBD2   30000 perm   6 sec   (4917 perm/sec)   p_kst 4.063333e-02   p_cons 7.942000e-01   p_joint 8.626667e-02

Joint ci ratio: 5.902101e-02	ci left: 9.638588e-02	ci right 1.022724e-01	k: 3972	n:40000
Cons ci ratio: 1.000867e-02	ci left: 7.891721e-01	ci right 7.971353e-01	k: 31727	n:40000
KS ci ratio: 9.482145e-02	ci left: 3.902881e-02	ci right 4.293818e-02	k: 1638	n:40000
PGBD2   40000 perm   8 sec   (4760 perm/sec)   p_kst 4.095000e-02   p_cons 7.931750e-01   p_joint 9.930000e-02

Outputting figure to mutsig2_images.part000000000129/PGBD2.4_1787_40000_0.04095_0.79317_0.0993.png
                gene_name: PGBD2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 49 percent done.
PEA15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
Cons ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
KS ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
PEA15   10000 perm   1 sec   (6791 perm/sec)   p_kst 6.920000e-02   p_cons 7.297000e-01   p_joint 8.990000e-02

Joint ci ratio: 8.803028e-02	ci left: 8.621560e-02	ci right 9.420400e-02	k: 1803	n:20000
Cons ci ratio: 1.632751e-02	ci left: 7.362793e-01	ci right 7.484502e-01	k: 14848	n:20000
KS ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
PEA15   20000 perm   3 sec   (5930 perm/sec)   p_kst 6.865000e-02   p_cons 7.424000e-01   p_joint 9.015000e-02

Joint ci ratio: 7.248206e-02	ci left: 8.560441e-02	ci right 9.207547e-02	k: 2664	n:30000
Cons ci ratio: 1.327797e-02	ci left: 7.389543e-01	ci right 7.488651e-01	k: 22318	n:30000
KS ci ratio: 8.330529e-02	ci left: 6.586293e-02	ci right 7.162093e-02	k: 2061	n:30000
PEA15   30000 perm   5 sec   (5578 perm/sec)   p_kst 6.870000e-02   p_cons 7.439333e-01   p_joint 8.880000e-02

Outputting figure to mutsig2_images.part000000000129/PEA15.3_405_30000_0.0687_0.74393_0.0888.png
                gene_name: PEA15
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 51 percent done.
PENK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
Cons ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
KS ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
PENK   10000 perm   2 sec   (6384 perm/sec)   p_kst 5.390000e-01   p_cons 1.294000e-01   p_joint 3.892000e-01

Joint ci ratio: 3.381800e-02	ci left: 3.949951e-01	ci right 4.086334e-01	k: 8036	n:20000
Cons ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
KS ci ratio: 2.529441e-02	ci left: 5.386681e-01	ci right 5.525186e-01	k: 10912	n:20000
PENK   20000 perm   4 sec   (5624 perm/sec)   p_kst 5.456000e-01   p_cons 1.228500e-01   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000129/PENK.3_812_20000_0.5456_0.12285_0.4018.png
                gene_name: PENK
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 53 percent done.
PER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
Cons ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
KS ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
PER1   10000 perm   2 sec   (5259 perm/sec)   p_kst 9.770000e-01   p_cons 3.255000e-01   p_joint 7.776000e-01

Outputting figure to mutsig2_images.part000000000129/PER1.3_3961_10000_0.977_0.3255_0.7776.png
                gene_name: PER1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 55 percent done.
PEX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
Cons ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
KS ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
PEX12   10000 perm   2 sec   (6494 perm/sec)   p_kst 5.430000e-02   p_cons 6.968000e-01   p_joint 1.228000e-01

Joint ci ratio: 7.441060e-02	ci left: 1.172975e-01	ci right 1.264127e-01	k: 2436	n:20000
Cons ci ratio: 1.805706e-02	ci left: 6.956574e-01	ci right 7.083838e-01	k: 14041	n:20000
KS ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
PEX12   20000 perm   4 sec   (5705 perm/sec)   p_kst 5.375000e-02   p_cons 7.020500e-01   p_joint 1.218000e-01

Joint ci ratio: 8.037199e-02	ci left: 7.050637e-02	ci right 7.644321e-02	k: 2203	n:30000
Cons ci ratio: 1.526181e-02	ci left: 6.821199e-01	ci right 6.926438e-01	k: 20622	n:30000
KS ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
PEX12   30000 perm   6 sec   (5388 perm/sec)   p_kst 5.276667e-02   p_cons 6.874000e-01   p_joint 7.343333e-02

Outputting figure to mutsig2_images.part000000000129/PEX12.3_1092_30000_0.052767_0.6874_0.073433.png
                gene_name: PEX12
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 57 percent done.
PEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
KS ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
PEX2   10000 perm   2 sec   (6626 perm/sec)   p_kst 9.693000e-01   p_cons 5.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX2.3_922_10000_0.9693_0.5282_1.png
                gene_name: PEX2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
PEX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
Cons ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
KS ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
PEX7   10000 perm   2 sec   (6359 perm/sec)   p_kst 1.523000e-01   p_cons 4.748000e-01   p_joint 4.047000e-01

Outputting figure to mutsig2_images.part000000000129/PEX7.3_1012_10000_0.1523_0.4748_0.4047.png
                gene_name: PEX7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 61 percent done.
PFKFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
KS ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
PFKFB2   10000 perm   2 sec   (6245 perm/sec)   p_kst 8.059000e-01   p_cons 5.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKFB2.3_1644_10000_0.8059_0.5712_1.png
                gene_name: PFKFB2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
PFKP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
KS ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
PFKP   10000 perm   2 sec   (5852 perm/sec)   p_kst 8.066000e-01   p_cons 6.700000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKP.3_2443_10000_0.8066_0.67_1.png
                gene_name: PFKP
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
PFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
PFN2   10000 perm   2 sec   (6544 perm/sec)   p_kst 2.773000e-01   p_cons 4.030000e-02   p_joint 3.167000e-01

Joint ci ratio: 6.571201e-02	ci left: 1.460638e-01	ci right 1.560379e-01	k: 3020	n:20000
Cons ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
KS ci ratio: 4.492720e-02	ci left: 2.694652e-01	ci right 2.819001e-01	k: 5513	n:20000
PFN2   20000 perm   3 sec   (5765 perm/sec)   p_kst 2.756500e-01   p_cons 3.880000e-02   p_joint 1.510000e-01

Joint ci ratio: 6.242586e-02	ci left: 1.125285e-01	ci right 1.198127e-01	k: 3484	n:30000
Cons ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
KS ci ratio: 3.650318e-02	ci left: 2.725708e-01	ci right 2.827390e-01	k: 8329	n:30000
PFN2   30000 perm   6 sec   (5454 perm/sec)   p_kst 2.776333e-01   p_cons 3.940000e-02   p_joint 1.161333e-01

Joint ci ratio: 5.580776e-02	ci left: 1.067274e-01	ci right 1.128794e-01	k: 4391	n:40000
Cons ci ratio: 9.658623e-02	ci left: 3.763659e-02	ci right 4.148062e-02	k: 1581	n:40000
KS ci ratio: 3.173862e-02	ci left: 2.716730e-01	ci right 2.804596e-01	k: 11042	n:40000
PFN2   40000 perm   8 sec   (5247 perm/sec)   p_kst 2.760500e-01   p_cons 3.952500e-02   p_joint 1.097750e-01

Outputting figure to mutsig2_images.part000000000129/PFN2.3_537_40000_0.27605_0.039525_0.10977.png
                gene_name: PFN2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 67 percent done.
PGLYRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
Cons ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
KS ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
PGLYRP2   10000 perm   2 sec   (6098 perm/sec)   p_kst 2.730000e-01   p_cons 5.172000e-01   p_joint 4.334000e-01

Outputting figure to mutsig2_images.part000000000129/PGLYRP2.3_1751_10000_0.273_0.5172_0.4334.png
                gene_name: PGLYRP2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 69 percent done.
PDZK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
Cons ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
KS ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
PDZK1   10000 perm   2 sec   (6370 perm/sec)   p_kst 5.503000e-01   p_cons 1.278000e-01   p_joint 2.336000e-01

Joint ci ratio: 7.484844e-02	ci left: 1.160678e-01	ci right 1.251428e-01	k: 2411	n:20000
Cons ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
KS ci ratio: 2.539403e-02	ci left: 5.367160e-01	ci right 5.505713e-01	k: 10873	n:20000
PDZK1   20000 perm   4 sec   (5601 perm/sec)   p_kst 5.436500e-01   p_cons 1.309500e-01   p_joint 1.205500e-01

Outputting figure to mutsig2_images.part000000000129/PDZK1.2_1592_20000_0.54365_0.13095_0.12055.png
                gene_name: PDZK1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
PELI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
PELI1   10000 perm   1 sec   (6703 perm/sec)   p_kst 5.289000e-01   p_cons 2.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI1.2_1281_10000_0.5289_0.2865_1.png
                gene_name: PELI1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PELI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
KS ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
PELI3   10000 perm   2 sec   (6423 perm/sec)   p_kst 4.169000e-01   p_cons 3.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI3.2_1438_10000_0.4169_0.3916_1.png
                gene_name: PELI3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PELP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
Cons ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
KS ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
PELP1   10000 perm   2 sec   (5704 perm/sec)   p_kst 2.963000e-01   p_cons 4.560000e-02   p_joint 5.720000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 1.252327e-01	ci left: 4.376838e-02	ci right 4.966431e-02	k: 933	n:20000
KS ci ratio: 4.249239e-02	ci left: 2.921131e-01	ci right 3.048456e-01	k: 5969	n:20000
PELP1   20000 perm   4 sec   (5031 perm/sec)   p_kst 2.984500e-01   p_cons 4.665000e-02   p_joint 3.970000e-02

Joint ci ratio: 9.531799e-02	ci left: 5.081738e-02	ci right 5.593622e-02	k: 1600	n:30000
Cons ci ratio: 1.010481e-01	ci left: 4.534800e-02	ci right 5.020672e-02	k: 1432	n:30000
KS ci ratio: 3.470874e-02	ci left: 2.931259e-01	ci right 3.035132e-01	k: 8949	n:30000
PELP1   30000 perm   6 sec   (4802 perm/sec)   p_kst 2.983000e-01   p_cons 4.773333e-02   p_joint 5.333333e-02

Joint ci ratio: 8.138007e-02	ci left: 5.258955e-02	ci right 5.707536e-02	k: 2192	n:40000
Cons ci ratio: 8.563648e-02	ci left: 4.763949e-02	ci right 5.192617e-02	k: 1990	n:40000
KS ci ratio: 3.003416e-02	ci left: 2.941672e-01	ci right 3.031620e-01	k: 11946	n:40000
PELP1   40000 perm   9 sec   (4654 perm/sec)   p_kst 2.986500e-01   p_cons 4.975000e-02   p_joint 5.480000e-02

Outputting figure to mutsig2_images.part000000000129/PELP1.2_3461_40000_0.29865_0.04975_0.0548.png
                gene_name: PELP1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 78 percent done.
PET112L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
KS ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
PET112L   10000 perm   2 sec   (6195 perm/sec)   p_kst 7.343000e-01   p_cons 7.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PET112L.2_1726_10000_0.7343_0.772_1.png
                gene_name: PET112L
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PEX11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
PEX11A   10000 perm   1 sec   (6719 perm/sec)   p_kst 7.314000e-01   p_cons 8.218000e-01   p_joint 9.335000e-01

Outputting figure to mutsig2_images.part000000000129/PEX11A.2_756_10000_0.7314_0.8218_0.9335.png
                gene_name: PEX11A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 82 percent done.
PEX11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
Cons ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
KS ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
PEX11B   10000 perm   1 sec   (6741 perm/sec)   p_kst 3.945000e-01   p_cons 5.059000e-01   p_joint 6.720000e-01

Outputting figure to mutsig2_images.part000000000129/PEX11B.2_814_10000_0.3945_0.5059_0.672.png
                gene_name: PEX11B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 84 percent done.
PEX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
KS ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
PEX5   10000 perm   2 sec   (6154 perm/sec)   p_kst 9.680000e-01   p_cons 8.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX5.2_2025_10000_0.968_0.8726_1.png
                gene_name: PEX5
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PFKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
PFKL   10000 perm   2 sec   (6112 perm/sec)   p_kst 7.139000e-01   p_cons 4.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKL.2_2431_10000_0.7139_0.4997_1.png
                gene_name: PFKL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PGAM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
KS ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
PGAM4   10000 perm   1 sec   (6863 perm/sec)   p_kst 9.605000e-01   p_cons 7.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PGAM4.2_769_10000_0.9605_0.7699_1.png
                gene_name: PGAM4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PGBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
Cons ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
PGBD4   10000 perm   2 sec   (6230 perm/sec)   p_kst 1.387000e-01   p_cons 3.516000e-01   p_joint 4.852000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD4.2_1762_10000_0.1387_0.3516_0.4852.png
                gene_name: PGBD4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 92 percent done.
PGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.462034e-02	ci left: 7.081598e-01	ci right 7.259136e-01	k: 7171	n:10000
Cons ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KS ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
PGC   10000 perm   2 sec   (6490 perm/sec)   p_kst 6.953000e-01   p_cons 4.666000e-01   p_joint 7.171000e-01

Outputting figure to mutsig2_images.part000000000129/PGC.2_1512_10000_0.6953_0.4666_0.7171.png
                gene_name: PGC
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 94 percent done.
PGD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
Cons ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
PGD   10000 perm   2 sec   (6316 perm/sec)   p_kst 5.289000e-01   p_cons 6.313000e-01   p_joint 9.323000e-01

Outputting figure to mutsig2_images.part000000000129/PGD.2_1504_10000_0.5289_0.6313_0.9323.png
                gene_name: PGD
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 96 percent done.
PGLYRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
Cons ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
PGLYRP4   10000 perm   1 sec   (6787 perm/sec)   p_kst 2.440000e-02   p_cons 1.542000e-01   p_joint 1.047000e-01

Joint ci ratio: 4.679891e-02	ci left: 2.535839e-01	ci right 2.657860e-01	k: 5193	n:20000
Cons ci ratio: 6.515406e-02	ci left: 1.482339e-01	ci right 1.582671e-01	k: 3064	n:20000
KS ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
PGLYRP4   20000 perm   3 sec   (5978 perm/sec)   p_kst 2.330000e-02   p_cons 1.532000e-01   p_joint 2.596500e-01

Joint ci ratio: 3.461227e-02	ci left: 2.942867e-01	ci right 3.046855e-01	k: 8984	n:30000
Cons ci ratio: 5.355998e-02	ci left: 1.474271e-01	ci right 1.555738e-01	k: 4544	n:30000
KS ci ratio: 1.483862e-01	ci left: 2.104423e-02	ci right 2.444906e-02	k: 681	n:30000
PGLYRP4   30000 perm   5 sec   (5662 perm/sec)   p_kst 2.270000e-02   p_cons 1.514667e-01   p_joint 2.994667e-01

Joint ci ratio: 3.011501e-02	ci left: 2.930471e-01	ci right 3.020323e-01	k: 11901	n:40000
Cons ci ratio: 4.668442e-02	ci left: 1.463405e-01	ci right 1.533605e-01	k: 5993	n:40000
KS ci ratio: 1.311378e-01	ci left: 2.041542e-02	ci right 2.330457e-02	k: 873	n:40000
PGLYRP4   40000 perm   7 sec   (5459 perm/sec)   p_kst 2.182500e-02   p_cons 1.498250e-01   p_joint 2.975250e-01

Joint ci ratio: 2.707617e-02	ci left: 2.913632e-01	ci right 2.993805e-01	k: 14768	n:50000
Cons ci ratio: 4.196527e-02	ci left: 1.454531e-01	ci right 1.517078e-01	k: 7428	n:50000
KS ci ratio: 1.174860e-01	ci left: 2.049898e-02	ci right 2.307695e-02	k: 1088	n:50000
PGLYRP4   50000 perm   9 sec   (5295 perm/sec)   p_kst 2.176000e-02   p_cons 1.485600e-01   p_joint 2.953600e-01

Joint ci ratio: 2.463104e-02	ci left: 2.931627e-01	ci right 3.004903e-01	k: 17809	n:60000
Cons ci ratio: 3.818524e-02	ci left: 1.465397e-01	ci right 1.522609e-01	k: 8963	n:60000
KS ci ratio: 1.077481e-01	ci left: 2.041919e-02	ci right 2.276074e-02	k: 1294	n:60000
PGLYRP4   60000 perm   12 sec   (5142 perm/sec)   p_kst 2.156667e-02   p_cons 1.493833e-01   p_joint 2.968167e-01

Joint ci ratio: 2.277300e-02	ci left: 2.940008e-01	ci right 3.007874e-01	k: 20817	n:70000
Cons ci ratio: 3.527737e-02	ci left: 1.472913e-01	ci right 1.525949e-01	k: 10495	n:70000
KS ci ratio: 1.002254e-01	ci left: 2.031283e-02	ci right 2.246996e-02	k: 1496	n:70000
PGLYRP4   70000 perm   14 sec   (5017 perm/sec)   p_kst 2.137143e-02   p_cons 1.499286e-01   p_joint 2.973857e-01

Joint ci ratio: 2.124625e-02	ci left: 2.953177e-01	ci right 3.016719e-01	k: 23879	n:80000
Cons ci ratio: 3.296735e-02	ci left: 1.477059e-01	ci right 1.526695e-01	k: 12014	n:80000
KS ci ratio: 9.383249e-02	ci left: 2.034727e-02	ci right 2.236265e-02	k: 1707	n:80000
PGLYRP4   80000 perm   16 sec   (4901 perm/sec)   p_kst 2.133750e-02   p_cons 1.501750e-01   p_joint 2.984875e-01

Outputting figure to mutsig2_images.part000000000129/PGLYRP4.2_1154_80000_0.021337_0.15018_0.29849.png
                gene_name: PGLYRP4
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.30 

Current progress: 98 percent done.
PGM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
Cons ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
PGM1   10000 perm   2 sec   (6050 perm/sec)   p_kst 2.161000e-01   p_cons 3.916000e-01   p_joint 6.734000e-01

Outputting figure to mutsig2_images.part000000000129/PGM1.2_2037_10000_0.2161_0.3916_0.6734.png
                gene_name: PGM1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000129
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 129 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 4422306: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000130> was used as the working directory.
Started at Wed Oct 24 18:02:43 2012
Results reported at Wed Oct 24 19:30:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000130.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000130.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 130  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000130.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5382.00 sec.
    Max Memory :      5273 MB
    Max Swap   :      7674 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
130
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 130
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 130: processing genes 11672 - 11761
Calculating significance of each gene.
Using projection method.
11672	PGM2	4.120471e-01
11673	PGM2L1	7.638574e-01
11674	PGM3	6.073342e-01
11675	PGM5	2.028222e-01
11676	PGP	4.507101e-01
11677	PGPEP1	1
11678	PGPEP1L	2.698082e-01
11679	PGR	4.434029e-01
11680	PGRMC1	4.251795e-01
11681	PGRMC2	1
11682	PGS1	9.509305e-01
11683	PHACTR1	9.076146e-01
11684	PHACTR2	9.708305e-01
11685	PHACTR3	5.888847e-01
11686	PHACTR4	1
11687	PHAX	1
11688	PHB	8.431632e-01
11689	PHB2	1
11690	PHC1	9.753180e-01
11691	PHC2	1
11692	PHC3	9.841888e-01
11693	PHEX	7.686935e-01
11694	PHF1	1
11695	PHF10	1
11696	PHF11	1
11697	PHF12	9.690027e-01
11698	PHF13	7.111785e-01
11699	PHF14	7.230779e-01
11700	PHF15	6.812192e-01
11701	PHF16	3.588821e-01
11702	PHF17	3.456024e-01
11703	PHF19	8.841580e-01
11704	PHF2	1
11705	PHF20	7.021226e-01
11706	PHF20L1	7.620549e-01
11707	PHF21A	9.600354e-01
11708	PHF21B	8.885836e-01
11709	PHF23	1
11710	PHF3	1
11711	PHF5A	1
11712	PHF6	5.722354e-01
11713	PHF7	9.106765e-01
11714	PHF8	9.350583e-01
11715	PHGDH	9.395504e-01
11716	PHIP	9.949776e-01
11717	PHKA1	9.127649e-01
11718	PHKA2	9.709039e-01
11719	PHKB	9.578345e-01
11720	PHKG1	8.410395e-01
11721	PHKG2	7.519078e-01
11722	PHLDA1	4.493364e-01
11723	PHLDA2	1
11724	PHLDA3	3.717873e-01
11725	PHLDB1	1
11726	PHLDB2	9.585361e-01
11727	PHLDB3	8.329593e-01
11728	PHLPP1	9.707554e-01
11729	PHLPP2	9.946932e-01
11730	PHOSPHO1	1
11731	PHOSPHO2	1.331021e-01
11732	PHOX2B	2.342040e-01
11733	PHPT1	5.594883e-01
11734	PHRF1	9.310191e-01
11735	PHTF1	9.321945e-01
11736	PHTF2	9.052416e-01
11737	PHYH	6.785633e-01
11738	PHYHD1	7.922539e-01
11739	PHYHIP	6.038089e-01
11740	PHYHIPL	4.984723e-01
11741	PI15	4.323626e-04
11742	PI16	1
11743	PI3	5.804388e-01
11744	PI4K2A	7.827604e-01
11745	PI4K2B	7.497337e-01
11746	PI4KA	9.999908e-01
11747	PI4KB	5.718800e-01
11748	PIAS1	7.396916e-01
11749	PIAS2	7.312069e-01
11750	PIAS3	8.638480e-01
11751	PIAS4	1
11752	PIBF1	7.505905e-01
11753	PICALM	6.698517e-01
11754	PICK1	6.964158e-01
11755	PID1	5.923320e-01
11756	PIF1	9.806099e-01
11757	PIGA	1
11758	PIGB	7.715792e-01
11759	PIGC	5.797047e-01
11760	PIGF	1
11761	PIGG	9.626969e-01
Done

Running MutSig 2:
Scatter job 130: processing genes 11672 - 11761
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
KS ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
PGM5   10000 perm   2 sec   (5063 perm/sec)   p_kst 6.180000e-02   p_cons 3.047000e-01   p_joint 9.830000e-02

Joint ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
Cons ci ratio: 4.169931e-02	ci left: 3.000145e-01	ci right 3.128418e-01	k: 6128	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
PGM5   20000 perm   6 sec   (3239 perm/sec)   p_kst 6.120000e-02   p_cons 3.064000e-01   p_joint 8.455000e-02

Joint ci ratio: 7.266175e-02	ci left: 8.521100e-02	ci right 9.166896e-02	k: 2652	n:30000
Cons ci ratio: 3.422575e-02	ci left: 2.989964e-01	ci right 3.094415e-01	k: 9126	n:30000
KS ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
PGM5   30000 perm   9 sec   (3506 perm/sec)   p_kst 6.173333e-02   p_cons 3.042000e-01   p_joint 8.840000e-02

Outputting figure to mutsig2_images.part000000000130/PGM5.10_1748_30000_0.061733_0.3042_0.0884.png
                gene_name: PGM5
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.092 

Current progress: 2 percent done.
PHKA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
Cons ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
KS ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
PHKA2   10000 perm   2 sec   (4313 perm/sec)   p_kst 3.420000e-02   p_cons 7.430000e-01   p_joint 1.098000e-01

Joint ci ratio: 8.684489e-02	ci left: 8.842102e-02	ci right 9.649791e-02	k: 1848	n:20000
Cons ci ratio: 1.722308e-02	ci left: 7.151803e-01	ci right 7.276553e-01	k: 14429	n:20000
KS ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
PHKA2   20000 perm   5 sec   (3980 perm/sec)   p_kst 3.525000e-02   p_cons 7.214500e-01   p_joint 9.240000e-02

Joint ci ratio: 6.646459e-02	ci left: 1.004361e-01	ci right 1.073741e-01	k: 3116	n:30000
Cons ci ratio: 1.402712e-02	ci left: 7.173616e-01	ci right 7.275286e-01	k: 21674	n:30000
KS ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
PHKA2   30000 perm   8 sec   (3837 perm/sec)   p_kst 3.380000e-02   p_cons 7.224667e-01   p_joint 1.038667e-01

Joint ci ratio: 6.532999e-02	ci left: 7.987095e-02	ci right 8.528983e-02	k: 3302	n:40000
Cons ci ratio: 1.214611e-02	ci left: 7.181086e-01	ci right 7.269091e-01	k: 28901	n:40000
KS ci ratio: 1.048317e-01	ci left: 3.200171e-02	ci right 3.556639e-02	k: 1350	n:40000
PHKA2   40000 perm   11 sec   (3747 perm/sec)   p_kst 3.375000e-02   p_cons 7.225250e-01   p_joint 8.255000e-02

Joint ci ratio: 6.448472e-02	ci left: 6.659648e-02	ci right 7.105374e-02	k: 3440	n:50000
Cons ci ratio: 1.086180e-02	ci left: 7.186528e-01	ci right 7.265213e-01	k: 36130	n:50000
KS ci ratio: 9.413290e-02	ci left: 3.193993e-02	ci right 3.511453e-02	k: 1675	n:50000
PHKA2   50000 perm   14 sec   (3676 perm/sec)   p_kst 3.350000e-02   p_cons 7.226000e-01   p_joint 6.880000e-02

Outputting figure to mutsig2_images.part000000000130/PHKA2.10_3840_50000_0.0335_0.7226_0.0688.png
                gene_name: PHKA2
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 3 percent done.
PHACTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
Cons ci ratio: 1.160542e-01	ci left: 9.642692e-02	ci right 1.084058e-01	k: 1023	n:10000
KS ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
PHACTR3   10000 perm   2 sec   (5093 perm/sec)   p_kst 1.185000e-01   p_cons 1.023000e-01   p_joint 6.110000e-02

Joint ci ratio: 9.367852e-02	ci left: 7.671668e-02	ci right 8.430580e-02	k: 1609	n:20000
Cons ci ratio: 8.315414e-02	ci left: 9.582658e-02	ci right 1.041901e-01	k: 1999	n:20000
KS ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
PHACTR3   20000 perm   4 sec   (4612 perm/sec)   p_kst 1.187000e-01   p_cons 9.995000e-02   p_joint 8.045000e-02

Outputting figure to mutsig2_images.part000000000130/PHACTR3.8_1732_20000_0.1187_0.09995_0.08045.png
                gene_name: PHACTR3
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.084 

Current progress: 5 percent done.
PHF20L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.914655e-02	ci left: 7.995320e-01	ci right 8.150886e-01	k: 8074	n:10000
Cons ci ratio: 2.220940e-02	ci left: 7.484697e-01	ci right 7.653804e-01	k: 7570	n:10000
KS ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
PHF20L1   10000 perm   2 sec   (4708 perm/sec)   p_kst 6.867000e-01   p_cons 7.570000e-01   p_joint 8.074000e-01

Outputting figure to mutsig2_images.part000000000130/PHF20L1.8_3230_10000_0.6867_0.757_0.8074.png
                gene_name: PHF20L1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 7 percent done.
PHF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
Cons ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
KS ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
PHF3   10000 perm   2 sec   (4250 perm/sec)   p_kst 1.378000e-01   p_cons 8.680000e-02   p_joint 1.352000e-01

Joint ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
Cons ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
KS ci ratio: 7.025272e-02	ci left: 1.299476e-01	ci right 1.394589e-01	k: 2693	n:20000
PHF3   20000 perm   5 sec   (3880 perm/sec)   p_kst 1.346500e-01   p_cons 8.610000e-02   p_joint 8.275000e-02

Outputting figure to mutsig2_images.part000000000130/PHF3.8_6180_20000_0.13465_0.0861_0.08275.png
                gene_name: PHF3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 8 percent done.
PHLDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
Cons ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
KS ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
PHLDB2   10000 perm   2 sec   (4678 perm/sec)   p_kst 7.706000e-01   p_cons 2.063000e-01   p_joint 4.435000e-01

Outputting figure to mutsig2_images.part000000000130/PHLDB2.8_3915_10000_0.7706_0.2063_0.4435.png
                gene_name: PHLDB2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 10 percent done.
PI15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
Cons ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KS ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
PI15   10000 perm   2 sec   (5501 perm/sec)   p_kst 4.550000e-02   p_cons 1.813000e-01   p_joint 5.380000e-02

Joint ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
Cons ci ratio: 5.873369e-02	ci left: 1.767729e-01	ci right 1.875197e-01	k: 3642	n:20000
KS ci ratio: 1.239162e-01	ci left: 4.469010e-02	ci right 5.064229e-02	k: 952	n:20000
PI15   20000 perm   4 sec   (4885 perm/sec)   p_kst 4.760000e-02   p_cons 1.821000e-01   p_joint 5.630000e-02

Joint ci ratio: 8.595369e-02	ci left: 6.203992e-02	ci right 6.764471e-02	k: 1944	n:30000
Cons ci ratio: 4.822334e-02	ci left: 1.761293e-01	ci right 1.848660e-01	k: 5414	n:30000
KS ci ratio: 1.007898e-01	ci left: 4.557572e-02	ci right 5.044562e-02	k: 1439	n:30000
PI15   30000 perm   6 sec   (4668 perm/sec)   p_kst 4.796667e-02   p_cons 1.804667e-01   p_joint 6.480000e-02

Joint ci ratio: 8.118442e-02	ci left: 5.283474e-02	ci right 5.733012e-02	k: 2202	n:40000
Cons ci ratio: 4.166067e-02	ci left: 1.774360e-01	ci right 1.850103e-01	k: 7248	n:40000
KS ci ratio: 8.823229e-02	ci left: 4.494643e-02	ci right 4.911965e-02	k: 1880	n:40000
PI15   40000 perm   9 sec   (4536 perm/sec)   p_kst 4.700000e-02   p_cons 1.812000e-01   p_joint 5.505000e-02

Outputting figure to mutsig2_images.part000000000130/PI15.8_797_40000_0.047_0.1812_0.05505.png
                gene_name: PI15
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 12 percent done.
PHF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
Cons ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
KS ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
PHF17   10000 perm   2 sec   (5273 perm/sec)   p_kst 2.085000e-01   p_cons 4.656000e-01   p_joint 2.701000e-01

Outputting figure to mutsig2_images.part000000000130/PHF17.7_2596_10000_0.2085_0.4656_0.2701.png
                gene_name: PHF17
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 13 percent done.
PHKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
Cons ci ratio: 4.659038e-02	ci left: 4.047210e-01	ci right 4.241289e-01	k: 4144	n:10000
KS ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
PHKB   10000 perm   2 sec   (5005 perm/sec)   p_kst 6.067000e-01   p_cons 4.144000e-01   p_joint 7.646000e-01

Outputting figure to mutsig2_images.part000000000130/PHKB.7_3560_10000_0.6067_0.4144_0.7646.png
                gene_name: PHKB
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 15 percent done.
PHLPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
Cons ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
KS ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
PHLPP2   10000 perm   2 sec   (4483 perm/sec)   p_kst 1.057000e-01   p_cons 3.958000e-01   p_joint 1.816000e-01

Joint ci ratio: 6.203928e-02	ci left: 1.612127e-01	ci right 1.715844e-01	k: 3327	n:20000
Cons ci ratio: 3.321702e-02	ci left: 4.036210e-01	ci right 4.173051e-01	k: 8209	n:20000
KS ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
PHLPP2   20000 perm   5 sec   (4092 perm/sec)   p_kst 1.067500e-01   p_cons 4.104500e-01   p_joint 1.663500e-01

Outputting figure to mutsig2_images.part000000000130/PHLPP2.7_4044_20000_0.10675_0.41045_0.16635.png
                gene_name: PHLPP2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 17 percent done.
PI4KA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
Cons ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
PI4KA   10000 perm   2 sec   (4185 perm/sec)   p_kst 3.900000e-03   p_cons 3.965000e-01   p_joint 9.800000e-03

Joint ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
Cons ci ratio: 3.455358e-02	ci left: 3.847268e-01	ci right 3.983048e-01	k: 7830	n:20000
KS ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
PI4KA   20000 perm   5 sec   (3818 perm/sec)   p_kst 4.550000e-03   p_cons 3.915000e-01   p_joint 9.450000e-03

Joint ci ratio: 2.310914e-01	ci left: 8.401935e-03	ci right 1.062794e-02	k: 284	n:30000
Cons ci ratio: 2.823947e-02	ci left: 3.855388e-01	ci right 3.966157e-01	k: 11732	n:30000
KS ci ratio: 3.247453e-01	ci left: 4.049504e-03	ci right 5.648710e-03	k: 144	n:30000
PI4KA   30000 perm   8 sec   (3676 perm/sec)   p_kst 4.800000e-03   p_cons 3.910667e-01   p_joint 9.466667e-03

Joint ci ratio: 1.653855e-01	ci left: 1.270363e-02	ci right 1.501774e-02	k: 553	n:40000
Cons ci ratio: 2.494968e-02	ci left: 3.768357e-01	ci right 3.863815e-01	k: 15264	n:40000
KS ci ratio: 2.899043e-01	ci left: 3.890962e-03	ci right 5.232527e-03	k: 181	n:40000
PI4KA   40000 perm   11 sec   (3596 perm/sec)   p_kst 4.525000e-03   p_cons 3.816000e-01   p_joint 1.382500e-02

Joint ci ratio: 1.778731e-01	ci left: 8.763884e-03	ci right 1.049376e-02	k: 480	n:50000
Cons ci ratio: 2.235471e-02	ci left: 3.765208e-01	ci right 3.850530e-01	k: 19039	n:50000
KS ci ratio: 2.551084e-01	ci left: 4.100679e-03	ci right 5.317924e-03	k: 234	n:50000
PI4KA   50000 perm   14 sec   (3525 perm/sec)   p_kst 4.680000e-03   p_cons 3.807800e-01   p_joint 9.600000e-03

Joint ci ratio: 1.849247e-01	ci left: 6.745713e-03	ci right 8.135903e-03	k: 445	n:60000
Cons ci ratio: 2.050757e-02	ci left: 3.745835e-01	ci right 3.823616e-01	k: 22708	n:60000
KS ci ratio: 2.268959e-01	ci left: 4.388437e-03	ci right 5.526926e-03	k: 296	n:60000
PI4KA   60000 perm   17 sec   (3468 perm/sec)   p_kst 4.933333e-03   p_cons 3.784667e-01   p_joint 7.416667e-03

Joint ci ratio: 1.833758e-01	ci left: 5.890813e-03	ci right 7.093502e-03	k: 453	n:70000
Cons ci ratio: 1.902895e-02	ci left: 3.738213e-01	ci right 3.810174e-01	k: 26419	n:70000
KS ci ratio: 2.105235e-01	ci left: 4.409718e-03	ci right 5.460537e-03	k: 344	n:70000
PI4KA   70000 perm   21 sec   (3411 perm/sec)   p_kst 4.914286e-03   p_cons 3.774143e-01   p_joint 6.471429e-03

Joint ci ratio: 1.769069e-01	ci left: 5.560214e-03	ci right 6.651070e-03	k: 487	n:80000
Cons ci ratio: 1.779346e-02	ci left: 3.742264e-01	ci right 3.809575e-01	k: 30207	n:80000
KS ci ratio: 1.972503e-01	ci left: 4.427900e-03	ci right 5.408533e-03	k: 392	n:80000
PI4KA   80000 perm   24 sec   (3361 perm/sec)   p_kst 4.900000e-03   p_cons 3.775875e-01   p_joint 6.087500e-03

Joint ci ratio: 1.722400e-01	ci left: 5.229226e-03	ci right 6.225260e-03	k: 514	n:90000
Cons ci ratio: 1.674890e-02	ci left: 3.751744e-01	ci right 3.815223e-01	k: 34051	n:90000
KS ci ratio: 1.864203e-01	ci left: 4.433069e-03	ci right 5.354844e-03	k: 439	n:90000
PI4KA   90000 perm   27 sec   (3311 perm/sec)   p_kst 4.877778e-03   p_cons 3.783444e-01   p_joint 5.711111e-03

Joint ci ratio: 1.411841e-01	ci left: 7.109648e-03	ci right 8.199201e-03	k: 764	n:100000
Cons ci ratio: 1.589702e-02	ci left: 3.751131e-01	ci right 3.811340e-01	k: 37812	n:100000
KS ci ratio: 1.699825e-01	ci left: 4.840224e-03	ci right 5.748834e-03	k: 528	n:100000
PI4KA   100000 perm   31 sec   (3265 perm/sec)   p_kst 5.280000e-03   p_cons 3.781200e-01   p_joint 7.640000e-03

Joint ci ratio: 1.372261e-01	ci left: 6.858098e-03	ci right 7.877225e-03	k: 809	n:110000
Cons ci ratio: 1.512834e-02	ci left: 3.761499e-01	ci right 3.818928e-01	k: 41692	n:110000
KS ci ratio: 1.634760e-01	ci left: 4.774791e-03	ci right 5.633433e-03	k: 571	n:110000
PI4KA   110000 perm   34 sec   (3221 perm/sec)   p_kst 5.190909e-03   p_cons 3.790182e-01   p_joint 7.354545e-03

Joint ci ratio: 1.219157e-01	ci left: 8.020648e-03	ci right 9.069976e-03	k: 1024	n:120000
Cons ci ratio: 1.448127e-02	ci left: 3.763704e-01	ci right 3.818688e-01	k: 45494	n:120000
KS ci ratio: 1.553939e-01	ci left: 4.864970e-03	ci right 5.692549e-03	k: 632	n:120000
PI4KA   120000 perm   38 sec   (3179 perm/sec)   p_kst 5.266667e-03   p_cons 3.791167e-01   p_joint 8.533333e-03

Joint ci ratio: 1.211251e-01	ci left: 7.507973e-03	ci right 8.483396e-03	k: 1038	n:130000
Cons ci ratio: 1.390367e-02	ci left: 3.767995e-01	ci right 3.820828e-01	k: 49327	n:130000
KS ci ratio: 1.495995e-01	ci left: 4.860682e-03	ci right 5.653940e-03	k: 682	n:130000
PI4KA   130000 perm   41 sec   (3139 perm/sec)   p_kst 5.246154e-03   p_cons 3.794385e-01   p_joint 7.984615e-03

Joint ci ratio: 1.184342e-01	ci left: 7.304227e-03	ci right 8.230620e-03	k: 1086	n:140000
Cons ci ratio: 1.339414e-02	ci left: 3.770284e-01	ci right 3.821195e-01	k: 53140	n:140000
KS ci ratio: 1.450063e-01	ci left: 4.816186e-03	ci right 5.575958e-03	k: 726	n:140000
PI4KA   140000 perm   45 sec   (3099 perm/sec)   p_kst 5.185714e-03   p_cons 3.795714e-01   p_joint 7.757143e-03

Joint ci ratio: 1.037907e-01	ci left: 8.930825e-03	ci right 9.914944e-03	k: 1412	n:150000
Cons ci ratio: 1.293883e-02	ci left: 3.771565e-01	ci right 3.820748e-01	k: 56942	n:150000
KS ci ratio: 1.407199e-01	ci left: 4.784379e-03	ci right 5.514950e-03	k: 771	n:150000
PI4KA   150000 perm   49 sec   (3061 perm/sec)   p_kst 5.140000e-03   p_cons 3.796133e-01   p_joint 9.413333e-03

Joint ci ratio: 8.859633e-02	ci left: 1.155167e-02	ci right 1.262862e-02	k: 1933	n:160000
Cons ci ratio: 1.203618e-02	ci left: 3.962496e-01	ci right 4.010540e-01	k: 63784	n:160000
KS ci ratio: 1.370456e-01	ci left: 4.738727e-03	ci right 5.441891e-03	k: 813	n:160000
PI4KA   160000 perm   53 sec   (3024 perm/sec)   p_kst 5.081250e-03   p_cons 3.986500e-01   p_joint 1.208125e-02

Joint ci ratio: 9.720071e-02	ci left: 9.015616e-03	ci right 9.942404e-03	k: 1610	n:170000
Cons ci ratio: 1.167574e-02	ci left: 3.963654e-01	ci right 4.010263e-01	k: 67778	n:170000
KS ci ratio: 1.330988e-01	ci left: 4.738474e-03	ci right 5.419749e-03	k: 862	n:170000
PI4KA   170000 perm   57 sec   (2987 perm/sec)   p_kst 5.070588e-03   p_cons 3.986941e-01   p_joint 9.470588e-03

Joint ci ratio: 9.507640e-02	ci left: 8.910530e-03	ci right 9.805379e-03	k: 1683	n:180000
Cons ci ratio: 1.134836e-02	ci left: 3.963648e-01	ci right 4.008940e-01	k: 71753	n:180000
KS ci ratio: 1.294746e-01	ci left: 4.738507e-03	ci right 5.399810e-03	k: 911	n:180000
PI4KA   180000 perm   61 sec   (2951 perm/sec)   p_kst 5.061111e-03   p_cons 3.986278e-01   p_joint 9.350000e-03

Joint ci ratio: 9.392537e-02	ci left: 8.657329e-03	ci right 9.515644e-03	k: 1725	n:190000
Cons ci ratio: 1.104936e-02	ci left: 3.962660e-01	ci right 4.006740e-01	k: 75709	n:190000
KS ci ratio: 1.258681e-01	ci left: 4.759154e-03	ci right 5.403457e-03	k: 964	n:190000
PI4KA   190000 perm   65 sec   (2916 perm/sec)   p_kst 5.073684e-03   p_cons 3.984684e-01   p_joint 9.078947e-03

Joint ci ratio: 9.192682e-02	ci left: 8.595619e-03	ci right 9.428706e-03	k: 1801	n:200000
Cons ci ratio: 1.076428e-02	ci left: 3.965581e-01	ci right 4.008548e-01	k: 79741	n:200000
KS ci ratio: 1.227290e-01	ci left: 4.763424e-03	ci right 5.391053e-03	k: 1014	n:200000
PI4KA   200000 perm   69 sec   (2882 perm/sec)   p_kst 5.070000e-03   p_cons 3.987050e-01   p_joint 9.005000e-03

Joint ci ratio: 9.491355e-02	ci left: 7.674555e-03	ci right 8.443879e-03	k: 1691	n:210000
Cons ci ratio: 1.050393e-02	ci left: 3.966525e-01	ci right 4.008456e-01	k: 83737	n:210000
KS ci ratio: 1.198702e-01	ci left: 4.762848e-03	ci right 5.374746e-03	k: 1063	n:210000
PI4KA   210000 perm   74 sec   (2852 perm/sec)   p_kst 5.061905e-03   p_cons 3.987476e-01   p_joint 8.052381e-03

Joint ci ratio: 9.070451e-02	ci left: 8.036176e-03	ci right 8.804133e-03	k: 1851	n:220000
Cons ci ratio: 1.026686e-02	ci left: 3.964941e-01	ci right 4.005904e-01	k: 87679	n:220000
KS ci ratio: 1.174146e-01	ci left: 4.744827e-03	ci right 5.341056e-03	k: 1108	n:220000
PI4KA   220000 perm   78 sec   (2823 perm/sec)   p_kst 5.036364e-03   p_cons 3.985409e-01   p_joint 8.413636e-03

Joint ci ratio: 8.920418e-02	ci left: 7.954513e-03	ci right 8.701436e-03	k: 1914	n:230000
Cons ci ratio: 1.004104e-02	ci left: 3.965460e-01	ci right 4.005522e-01	k: 91666	n:230000
KS ci ratio: 1.144577e-01	ci left: 4.783397e-03	ci right 5.368313e-03	k: 1166	n:230000
PI4KA   230000 perm   82 sec   (2793 perm/sec)   p_kst 5.069565e-03   p_cons 3.985478e-01   p_joint 8.321739e-03

Joint ci ratio: 8.773112e-02	ci left: 7.887904e-03	ci right 8.615714e-03	k: 1979	n:240000
Cons ci ratio: 9.835143e-03	ci left: 3.963198e-01	ci right 4.002410e-01	k: 95587	n:240000
KS ci ratio: 1.118973e-01	ci left: 4.802722e-03	ci right 5.375997e-03	k: 1220	n:240000
PI4KA   240000 perm   87 sec   (2763 perm/sec)   p_kst 5.083333e-03   p_cons 3.982792e-01   p_joint 8.245833e-03

Joint ci ratio: 8.706135e-02	ci left: 7.693644e-03	ci right 8.397833e-03	k: 2010	n:250000
Cons ci ratio: 9.627981e-03	ci left: 3.967799e-01	ci right 4.006225e-01	k: 99675	n:250000
KS ci ratio: 1.094152e-01	ci left: 4.828417e-03	ci right 5.391150e-03	k: 1276	n:250000
PI4KA   250000 perm   92 sec   (2728 perm/sec)   p_kst 5.104000e-03   p_cons 3.987000e-01   p_joint 8.040000e-03

Joint ci ratio: 8.604598e-02	ci left: 7.578334e-03	ci right 8.263472e-03	k: 2058	n:260000
Cons ci ratio: 9.435337e-03	ci left: 3.971054e-01	ci right 4.008738e-01	k: 103737	n:260000
KS ci ratio: 1.071721e-01	ci left: 4.844778e-03	ci right 5.397112e-03	k: 1330	n:260000
PI4KA   260000 perm   97 sec   (2688 perm/sec)   p_kst 5.115385e-03   p_cons 3.989885e-01   p_joint 7.915385e-03

Joint ci ratio: 8.306222e-02	ci left: 7.841509e-03	ci right 8.524667e-03	k: 2208	n:270000
Cons ci ratio: 9.260099e-03	ci left: 3.970818e-01	ci right 4.007796e-01	k: 107711	n:270000
KS ci ratio: 1.053294e-01	ci left: 4.834788e-03	ci right 5.375919e-03	k: 1377	n:270000
PI4KA   270000 perm   101 sec   (2662 perm/sec)   p_kst 5.100000e-03   p_cons 3.989296e-01   p_joint 8.177778e-03

Joint ci ratio: 8.214255e-02	ci left: 7.736321e-03	ci right 8.402493e-03	k: 2258	n:280000
Cons ci ratio: 9.091024e-03	ci left: 3.972318e-01	ci right 4.008631e-01	k: 111733	n:280000
KS ci ratio: 1.031791e-01	ci left: 4.863863e-03	ci right 5.396460e-03	k: 1435	n:280000
PI4KA   280000 perm   106 sec   (2637 perm/sec)   p_kst 5.125000e-03   p_cons 3.990464e-01   p_joint 8.064286e-03

Joint ci ratio: 8.105824e-02	ci left: 7.675593e-03	ci right 8.327400e-03	k: 2319	n:290000
Cons ci ratio: 8.934674e-03	ci left: 3.971688e-01	ci right 4.007367e-01	k: 115696	n:290000
KS ci ratio: 1.014973e-01	ci left: 4.857423e-03	ci right 5.380128e-03	k: 1483	n:290000
PI4KA   290000 perm   111 sec   (2612 perm/sec)   p_kst 5.113793e-03   p_cons 3.989517e-01   p_joint 7.996552e-03

Joint ci ratio: 7.979644e-02	ci left: 7.661444e-03	ci right 8.301449e-03	k: 2393	n:300000
Cons ci ratio: 8.786855e-03	ci left: 3.970705e-01	ci right 4.005782e-01	k: 119647	n:300000
KS ci ratio: 9.976428e-02	ci left: 4.864481e-03	ci right 5.378484e-03	k: 1535	n:300000
PI4KA   300000 perm   116 sec   (2587 perm/sec)   p_kst 5.116667e-03   p_cons 3.988233e-01   p_joint 7.976667e-03

Outputting figure to mutsig2_images.part000000000130/PI4KA.7_6351_300000_0.0051167_0.39882_0.0079767.png
                gene_name: PI4KA
               theta_stop: 0.100 
                    nperm: 300000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0049 
       ci_ks_bounds_right: 0.0054 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0080 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0083 

Current progress: 18 percent done.
PIGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
Cons ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
KS ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
PIGG   10000 perm   2 sec   (4900 perm/sec)   p_kst 3.842000e-01   p_cons 7.800000e-01   p_joint 5.398000e-01

Outputting figure to mutsig2_images.part000000000130/PIGG.7_3004_10000_0.3842_0.78_0.5398.png
                gene_name: PIGG
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 20 percent done.
PGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
PGR   10000 perm   2 sec   (5153 perm/sec)   p_kst 9.231000e-01   p_cons 2.131000e-01   p_joint 5.120000e-01

Outputting figure to mutsig2_images.part000000000130/PGR.6_2834_10000_0.9231_0.2131_0.512.png
                gene_name: PGR
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 22 percent done.
PHF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
PHF14   10000 perm   2 sec   (5074 perm/sec)   p_kst 4.850000e-02   p_cons 1.997000e-01   p_joint 5.920000e-02

Joint ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
Cons ci ratio: 5.616584e-02	ci left: 1.903200e-01	ci right 2.013685e-01	k: 3916	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
PHF14   20000 perm   4 sec   (4585 perm/sec)   p_kst 5.050000e-02   p_cons 1.958000e-01   p_joint 4.600000e-02

Joint ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
Cons ci ratio: 4.549622e-02	ci left: 1.938339e-01	ci right 2.028913e-01	k: 5950	n:30000
KS ci ratio: 9.789633e-02	ci left: 4.824442e-02	ci right 5.324304e-02	k: 1521	n:30000
PHF14   30000 perm   7 sec   (4393 perm/sec)   p_kst 5.070000e-02   p_cons 1.983333e-01   p_joint 7.393333e-02

Outputting figure to mutsig2_images.part000000000130/PHF14.6_2735_30000_0.0507_0.19833_0.073933.png
                gene_name: PHF14
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 23 percent done.
PHF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
Cons ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
KS ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
PHF16   10000 perm   2 sec   (5183 perm/sec)   p_kst 4.316000e-01   p_cons 4.333000e-01   p_joint 7.026000e-01

Outputting figure to mutsig2_images.part000000000130/PHF16.6_2512_10000_0.4316_0.4333_0.7026.png
                gene_name: PHF16
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
PHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
Cons ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
PHIP   10000 perm   2 sec   (4462 perm/sec)   p_kst 6.830000e-01   p_cons 4.812000e-01   p_joint 8.015000e-01

Outputting figure to mutsig2_images.part000000000130/PHIP.6_5626_10000_0.683_0.4812_0.8015.png
                gene_name: PHIP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 27 percent done.
PHRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
PHRF1   10000 perm   2 sec   (4626 perm/sec)   p_kst 3.936000e-01   p_cons 5.171000e-01   p_joint 6.314000e-01

Outputting figure to mutsig2_images.part000000000130/PHRF1.6_5015_10000_0.3936_0.5171_0.6314.png
                gene_name: PHRF1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 28 percent done.
PIAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
Cons ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
KS ci ratio: 2.446874e-02	ci left: 7.106829e-01	ci right 7.283891e-01	k: 7196	n:10000
PIAS3   10000 perm   2 sec   (5589 perm/sec)   p_kst 7.196000e-01   p_cons 2.437000e-01   p_joint 6.273000e-01

Outputting figure to mutsig2_images.part000000000130/PIAS3.6_1943_10000_0.7196_0.2437_0.6273.png
                gene_name: PIAS3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 30 percent done.
PGM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
PGM2   10000 perm   2 sec   (5388 perm/sec)   p_kst 2.060000e-02   p_cons 2.930000e-02   p_joint 9.600000e-03

Joint ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
Cons ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
PGM2   20000 perm   4 sec   (4861 perm/sec)   p_kst 2.270000e-02   p_cons 3.050000e-02   p_joint 1.530000e-02

Joint ci ratio: 1.990167e-01	ci left: 1.149527e-02	ci right 1.406704e-02	k: 382	n:30000
Cons ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
KS ci ratio: 1.517203e-01	ci left: 2.011312e-02	ci right 2.344705e-02	k: 652	n:30000
PGM2   30000 perm   6 sec   (4663 perm/sec)   p_kst 2.173333e-02   p_cons 2.810000e-02   p_joint 1.273333e-02

Joint ci ratio: 2.277745e-01	ci left: 6.512771e-03	ci right 8.209927e-03	k: 293	n:40000
Cons ci ratio: 1.167731e-01	ci left: 2.579781e-02	ci right 2.902129e-02	k: 1095	n:40000
KS ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
PGM2   40000 perm   9 sec   (4520 perm/sec)   p_kst 2.172500e-02   p_cons 2.737500e-02   p_joint 7.325000e-03

Joint ci ratio: 2.340263e-01	ci left: 4.927077e-03	ci right 6.251319e-03	k: 278	n:50000
Cons ci ratio: 1.012958e-01	ci left: 2.760505e-02	ci right 3.056996e-02	k: 1453	n:50000
KS ci ratio: 1.179296e-01	ci left: 2.034360e-02	ci right 2.291236e-02	k: 1080	n:50000
PGM2   50000 perm   11 sec   (4407 perm/sec)   p_kst 2.160000e-02   p_cons 2.906000e-02   p_joint 5.560000e-03

Joint ci ratio: 2.242553e-01	ci left: 4.498539e-03	ci right 5.650134e-03	k: 303	n:60000
Cons ci ratio: 9.304291e-02	ci left: 2.739484e-02	ci right 3.008433e-02	k: 1723	n:60000
KS ci ratio: 1.075784e-01	ci left: 2.048410e-02	ci right 2.282916e-02	k: 1298	n:60000
PGM2   60000 perm   14 sec   (4310 perm/sec)   p_kst 2.163333e-02   p_cons 2.871667e-02   p_joint 5.050000e-03

Joint ci ratio: 1.598833e-01	ci left: 7.833220e-03	ci right 9.207987e-03	k: 595	n:70000
Cons ci ratio: 8.661517e-02	ci left: 2.719586e-02	ci right 2.967201e-02	k: 1989	n:70000
KS ci ratio: 9.888379e-02	ci left: 2.087032e-02	ci right 2.305527e-02	k: 1536	n:70000
PGM2   70000 perm   17 sec   (4234 perm/sec)   p_kst 2.194286e-02   p_cons 2.841429e-02   p_joint 8.500000e-03

Joint ci ratio: 1.528912e-01	ci left: 7.526589e-03	ci right 8.784472e-03	k: 651	n:80000
Cons ci ratio: 8.122882e-02	ci left: 2.713726e-02	ci right 2.944712e-02	k: 2262	n:80000
KS ci ratio: 9.275611e-02	ci left: 2.082363e-02	ci right 2.286125e-02	k: 1746	n:80000
PGM2   80000 perm   19 sec   (4162 perm/sec)   p_kst 2.182500e-02   p_cons 2.827500e-02   p_joint 8.137500e-03

Joint ci ratio: 1.463252e-01	ci left: 7.331963e-03	ci right 8.500089e-03	k: 711	n:90000
Cons ci ratio: 7.607549e-02	ci left: 2.756433e-02	ci right 2.975508e-02	k: 2578	n:90000
KS ci ratio: 8.771120e-02	ci left: 2.075798e-02	ci right 2.267302e-02	k: 1953	n:90000
PGM2   90000 perm   22 sec   (4093 perm/sec)   p_kst 2.170000e-02   p_cons 2.864444e-02   p_joint 7.900000e-03

Joint ci ratio: 1.479615e-01	ci left: 6.454070e-03	ci right 7.494835e-03	k: 696	n:100000
Cons ci ratio: 7.224371e-02	ci left: 2.756579e-02	ci right 2.964167e-02	k: 2859	n:100000
KS ci ratio: 8.297825e-02	ci left: 2.092340e-02	ci right 2.274449e-02	k: 2182	n:100000
PGM2   100000 perm   25 sec   (4024 perm/sec)   p_kst 2.182000e-02   p_cons 2.859000e-02   p_joint 6.960000e-03

Joint ci ratio: 1.537761e-01	ci left: 5.420970e-03	ci right 6.332651e-03	k: 645	n:110000
Cons ci ratio: 6.921079e-02	ci left: 2.735475e-02	ci right 2.932477e-02	k: 3116	n:110000
KS ci ratio: 7.908808e-02	ci left: 2.098077e-02	ci right 2.271729e-02	k: 2402	n:110000
PGM2   110000 perm   28 sec   (3959 perm/sec)   p_kst 2.183636e-02   p_cons 2.832727e-02   p_joint 5.863636e-03

Joint ci ratio: 1.113805e-01	ci left: 9.647296e-03	ci right 1.079323e-02	k: 1225	n:120000
Cons ci ratio: 6.453065e-02	ci left: 2.886977e-02	ci right 3.080304e-02	k: 3579	n:120000
KS ci ratio: 7.571305e-02	ci left: 2.102207e-02	ci right 2.268448e-02	k: 2621	n:120000
PGM2   120000 perm   31 sec   (3898 perm/sec)   p_kst 2.184167e-02   p_cons 2.982500e-02   p_joint 1.020833e-02

Joint ci ratio: 1.187294e-01	ci left: 7.821431e-03	ci right 8.816072e-03	k: 1080	n:130000
Cons ci ratio: 6.622235e-02	ci left: 2.537629e-02	ci right 2.712185e-02	k: 3411	n:130000
KS ci ratio: 7.289376e-02	ci left: 2.096769e-02	ci right 2.256143e-02	k: 2828	n:130000
PGM2   130000 perm   34 sec   (3822 perm/sec)   p_kst 2.175385e-02   p_cons 2.623846e-02   p_joint 8.307692e-03

Joint ci ratio: 1.465337e-01	ci left: 4.712933e-03	ci right 5.464933e-03	k: 711	n:140000
Cons ci ratio: 6.173504e-02	ci left: 2.712798e-02	ci right 2.886307e-02	k: 3918	n:140000
KS ci ratio: 7.008499e-02	ci left: 2.109055e-02	ci right 2.262934e-02	k: 3059	n:140000
PGM2   140000 perm   37 sec   (3769 perm/sec)   p_kst 2.185000e-02   p_cons 2.798571e-02   p_joint 5.078571e-03

Joint ci ratio: 1.495423e-01	ci left: 4.218903e-03	ci right 4.907130e-03	k: 683	n:150000
Cons ci ratio: 5.968509e-02	ci left: 2.711838e-02	ci right 2.879327e-02	k: 4192	n:150000
KS ci ratio: 6.767238e-02	ci left: 2.113904e-02	ci right 2.262619e-02	k: 3281	n:150000
PGM2   150000 perm   40 sec   (3717 perm/sec)   p_kst 2.187333e-02   p_cons 2.794667e-02   p_joint 4.553333e-03

Joint ci ratio: 1.467877e-01	ci left: 4.111680e-03	ci right 4.768976e-03	k: 709	n:160000
Cons ci ratio: 5.771378e-02	ci left: 2.721557e-02	ci right 2.883909e-02	k: 4483	n:160000
KS ci ratio: 6.521753e-02	ci left: 2.136061e-02	ci right 2.280678e-02	k: 3532	n:160000
PGM2   160000 perm   44 sec   (3667 perm/sec)   p_kst 2.207500e-02   p_cons 2.801875e-02   p_joint 4.431250e-03

Joint ci ratio: 1.437877e-01	ci left: 4.039861e-03	ci right 4.671343e-03	k: 739	n:170000
Cons ci ratio: 5.582356e-02	ci left: 2.740077e-02	ci right 2.898008e-02	k: 4791	n:170000
KS ci ratio: 6.321705e-02	ci left: 2.141798e-02	ci right 2.282191e-02	k: 3759	n:170000
PGM2   170000 perm   47 sec   (3618 perm/sec)   p_kst 2.211176e-02   p_cons 2.818235e-02   p_joint 4.347059e-03

Joint ci ratio: 1.391606e-01	ci left: 4.083378e-03	ci right 4.699419e-03	k: 789	n:180000
Cons ci ratio: 5.416230e-02	ci left: 2.751134e-02	ci right 2.904835e-02	k: 5089	n:180000
KS ci ratio: 6.146102e-02	ci left: 2.142032e-02	ci right 2.278402e-02	k: 3977	n:180000
PGM2   180000 perm   50 sec   (3571 perm/sec)   p_kst 2.209444e-02   p_cons 2.827222e-02   p_joint 4.383333e-03

Joint ci ratio: 1.368479e-01	ci left: 4.005651e-03	ci right 4.599104e-03	k: 816	n:190000
Cons ci ratio: 5.295543e-02	ci left: 2.728876e-02	ci right 2.877832e-02	k: 5325	n:190000
KS ci ratio: 5.990205e-02	ci left: 2.138141e-02	ci right 2.270691e-02	k: 4187	n:190000
PGM2   190000 perm   54 sec   (3523 perm/sec)   p_kst 2.203684e-02   p_cons 2.802632e-02   p_joint 4.294737e-03

Joint ci ratio: 1.397250e-01	ci left: 3.646029e-03	ci right 4.198503e-03	k: 783	n:200000
Cons ci ratio: 5.152630e-02	ci left: 2.739983e-02	ci right 2.885389e-02	k: 5624	n:200000
KS ci ratio: 5.808570e-02	ci left: 2.161787e-02	ci right 2.291602e-02	k: 4452	n:200000
PGM2   200000 perm   58 sec   (3476 perm/sec)   p_kst 2.226000e-02   p_cons 2.812000e-02   p_joint 3.915000e-03

Joint ci ratio: 1.391161e-01	ci left: 3.504561e-03	ci right 4.033091e-03	k: 790	n:210000
Cons ci ratio: 5.032070e-02	ci left: 2.737851e-02	ci right 2.879646e-02	k: 5897	n:210000
KS ci ratio: 5.671470e-02	ci left: 2.161164e-02	ci right 2.287778e-02	k: 4670	n:210000
PGM2   210000 perm   61 sec   (3431 perm/sec)   p_kst 2.223810e-02   p_cons 2.808095e-02   p_joint 3.761905e-03

Joint ci ratio: 1.175211e-01	ci left: 4.736002e-03	ci right 5.331699e-03	k: 1106	n:220000
Cons ci ratio: 4.917545e-02	ci left: 2.738195e-02	ci right 2.876688e-02	k: 6175	n:220000
KS ci ratio: 5.538429e-02	ci left: 2.164666e-02	ci right 2.288415e-02	k: 4897	n:220000
PGM2   220000 perm   65 sec   (3387 perm/sec)   p_kst 2.225909e-02   p_cons 2.806818e-02   p_joint 5.027273e-03

Joint ci ratio: 1.159655e-01	ci left: 4.656704e-03	ci right 5.234142e-03	k: 1136	n:230000
Cons ci ratio: 4.800942e-02	ci left: 2.749285e-02	ci right 2.884951e-02	k: 6478	n:230000
KS ci ratio: 5.427888e-02	ci left: 2.157170e-02	ci right 2.277952e-02	k: 5099	n:230000
PGM2   230000 perm   69 sec   (3344 perm/sec)   p_kst 2.216957e-02   p_cons 2.816522e-02   p_joint 4.939130e-03

Joint ci ratio: 1.146180e-01	ci left: 4.571918e-03	ci right 5.131809e-03	k: 1163	n:240000
Cons ci ratio: 4.701897e-02	ci left: 2.748365e-02	ci right 2.881111e-02	k: 6754	n:240000
KS ci ratio: 5.320120e-02	ci left: 2.153200e-02	ci right 2.271292e-02	k: 5308	n:240000
PGM2   240000 perm   73 sec   (3299 perm/sec)   p_kst 2.211667e-02   p_cons 2.814167e-02   p_joint 4.845833e-03

Joint ci ratio: 1.007409e-01	ci left: 5.716613e-03	ci right 6.326924e-03	k: 1504	n:250000
Cons ci ratio: 4.604361e-02	ci left: 2.752687e-02	ci right 2.882810e-02	k: 7043	n:250000
KS ci ratio: 5.221429e-02	ci left: 2.147200e-02	ci right 2.262712e-02	k: 5511	n:250000
PGM2   250000 perm   77 sec   (3259 perm/sec)   p_kst 2.204400e-02   p_cons 2.817200e-02   p_joint 6.016000e-03

Joint ci ratio: 1.007526e-01	ci left: 5.496712e-03	ci right 6.083618e-03	k: 1504	n:260000
Cons ci ratio: 4.512021e-02	ci left: 2.757463e-02	ci right 2.885130e-02	k: 7334	n:260000
KS ci ratio: 5.124825e-02	ci left: 2.144339e-02	ci right 2.257500e-02	k: 5721	n:260000
PGM2   260000 perm   81 sec   (3218 perm/sec)   p_kst 2.200385e-02   p_cons 2.820769e-02   p_joint 5.784615e-03

Joint ci ratio: 1.010000e-01	ci left: 5.267827e-03	ci right 5.831755e-03	k: 1497	n:270000
Cons ci ratio: 4.424126e-02	ci left: 2.763009e-02	ci right 2.888377e-02	k: 7628	n:270000
KS ci ratio: 5.030358e-02	ci left: 2.144268e-02	ci right 2.255279e-02	k: 5938	n:270000
PGM2   270000 perm   85 sec   (3180 perm/sec)   p_kst 2.199259e-02   p_cons 2.825185e-02   p_joint 5.544444e-03

Joint ci ratio: 9.884407e-02	ci left: 5.309520e-03	ci right 5.865075e-03	k: 1563	n:280000
Cons ci ratio: 4.336110e-02	ci left: 2.774541e-02	ci right 2.897866e-02	k: 7940	n:280000
KS ci ratio: 4.927849e-02	ci left: 2.155512e-02	ci right 2.264766e-02	k: 6187	n:280000
PGM2   280000 perm   89 sec   (3141 perm/sec)   p_kst 2.209643e-02   p_cons 2.835714e-02   p_joint 5.582143e-03

Outputting figure to mutsig2_images.part000000000130/PGM2.5_1895_280000_0.022096_0.028357_0.0055821.png
                gene_name: PGM2
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0053 
    ci_joint_bounds_right: 0.0059 

Current progress: 32 percent done.
PHEX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
Cons ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
KS ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
PHEX   10000 perm   2 sec   (5435 perm/sec)   p_kst 6.154000e-01   p_cons 9.650000e-02   p_joint 3.095000e-01

Joint ci ratio: 5.232905e-02	ci left: 2.133340e-01	ci right 2.248478e-01	k: 4381	n:20000
Cons ci ratio: 8.347916e-02	ci left: 9.513965e-02	ci right 1.034773e-01	k: 1985	n:20000
KS ci ratio: 2.191627e-02	ci left: 6.085159e-01	ci right 6.220506e-01	k: 12306	n:20000
PHEX   20000 perm   4 sec   (4882 perm/sec)   p_kst 6.153000e-01   p_cons 9.925000e-02   p_joint 2.190500e-01

Outputting figure to mutsig2_images.part000000000130/PHEX.5_2338_20000_0.6153_0.09925_0.21905.png
                gene_name: PHEX
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 33 percent done.
PHF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
Cons ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
PHF20   10000 perm   2 sec   (5135 perm/sec)   p_kst 2.372000e-01   p_cons 1.667000e-01   p_joint 2.252000e-01

Outputting figure to mutsig2_images.part000000000130/PHF20.5_3107_10000_0.2372_0.1667_0.2252.png
                gene_name: PHF20
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 35 percent done.
PHF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
KS ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
PHF21B   10000 perm   2 sec   (5508 perm/sec)   p_kst 8.398000e-01   p_cons 6.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF21B.5_1648_10000_0.8398_0.6946_1.png
                gene_name: PHF21B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PHLDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
PHLDB1   10000 perm   2 sec   (4802 perm/sec)   p_kst 5.531000e-01   p_cons 5.410000e-02   p_joint 2.557000e-01

Joint ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
Cons ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
KS ci ratio: 2.489654e-02	ci left: 5.465278e-01	ci right 5.603566e-01	k: 11069	n:20000
PHLDB1   20000 perm   5 sec   (4412 perm/sec)   p_kst 5.534500e-01   p_cons 5.410000e-02   p_joint 1.268500e-01

Joint ci ratio: 6.046945e-02	ci left: 1.191389e-01	ci right 1.266009e-01	k: 3685	n:30000
Cons ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
KS ci ratio: 2.039770e-02	ci left: 5.461177e-01	ci right 5.574056e-01	k: 16553	n:30000
PHLDB1   30000 perm   7 sec   (4241 perm/sec)   p_kst 5.517667e-01   p_cons 5.366667e-02   p_joint 1.228333e-01

Outputting figure to mutsig2_images.part000000000130/PHLDB1.5_4222_30000_0.55177_0.053667_0.12283.png
                gene_name: PHLDB1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 38 percent done.
PHLPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
Cons ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
PHLPP1   10000 perm   2 sec   (4516 perm/sec)   p_kst 1.186000e-01   p_cons 5.040000e-02   p_joint 1.232000e-01

Joint ci ratio: 9.033333e-02	ci left: 8.214981e-02	ci right 8.997103e-02	k: 1720	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
PHLPP1   20000 perm   5 sec   (4074 perm/sec)   p_kst 1.192000e-01   p_cons 5.025000e-02   p_joint 8.600000e-02

Joint ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
Cons ci ratio: 9.712567e-02	ci left: 4.899332e-02	ci right 5.402732e-02	k: 1544	n:30000
KS ci ratio: 6.066663e-02	ci left: 1.184481e-01	ci right 1.258919e-01	k: 3664	n:30000
PHLPP1   30000 perm   8 sec   (3906 perm/sec)   p_kst 1.221333e-01   p_cons 5.146667e-02   p_joint 5.426667e-02

Outputting figure to mutsig2_images.part000000000130/PHLPP1.5_5222_30000_0.12213_0.051467_0.054267.png
                gene_name: PHLPP1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 40 percent done.
PIAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
Cons ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
PIAS2   10000 perm   2 sec   (5539 perm/sec)   p_kst 7.700000e-03   p_cons 6.767000e-01   p_joint 3.260000e-02

Joint ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
Cons ci ratio: 1.941949e-02	ci left: 6.641876e-01	ci right 6.772627e-01	k: 13415	n:20000
KS ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
PIAS2   20000 perm   4 sec   (4985 perm/sec)   p_kst 6.500000e-03   p_cons 6.707500e-01   p_joint 1.975000e-02

Joint ci ratio: 1.586925e-01	ci left: 1.834962e-02	ci right 2.154430e-02	k: 597	n:30000
Cons ci ratio: 1.584238e-02	ci left: 6.657841e-01	ci right 6.764494e-01	k: 20134	n:30000
KS ci ratio: 2.834800e-01	ci left: 5.436075e-03	ci right 7.261509e-03	k: 189	n:30000
PIAS2   30000 perm   6 sec   (4766 perm/sec)   p_kst 6.300000e-03   p_cons 6.711333e-01   p_joint 1.990000e-02

Joint ci ratio: 1.593668e-01	ci left: 1.371152e-02	ci right 1.610966e-02	k: 595	n:40000
Cons ci ratio: 1.375289e-02	ci left: 6.654425e-01	ci right 6.746828e-01	k: 26803	n:40000
KS ci ratio: 2.432572e-01	ci left: 5.665515e-03	ci right 7.257410e-03	k: 257	n:40000
PIAS2   40000 perm   9 sec   (4618 perm/sec)   p_kst 6.425000e-03   p_cons 6.700750e-01   p_joint 1.487500e-02

Joint ci ratio: 1.160241e-01	ci left: 2.102354e-02	ci right 2.363233e-02	k: 1115	n:50000
Cons ci ratio: 1.226361e-02	ci left: 6.672831e-01	ci right 6.755370e-01	k: 33571	n:50000
KS ci ratio: 2.177464e-01	ci left: 5.738724e-03	ci right 7.159492e-03	k: 321	n:50000
PIAS2   50000 perm   11 sec   (4498 perm/sec)   p_kst 6.420000e-03   p_cons 6.714200e-01   p_joint 2.230000e-02

Joint ci ratio: 1.066589e-01	ci left: 2.084114e-02	ci right 2.320541e-02	k: 1320	n:60000
Cons ci ratio: 1.119943e-02	ci left: 6.674747e-01	ci right 6.750088e-01	k: 40275	n:60000
KS ci ratio: 2.004523e-01	ci left: 5.698378e-03	ci right 6.983408e-03	k: 379	n:60000
PIAS2   60000 perm   14 sec   (4396 perm/sec)   p_kst 6.316667e-03   p_cons 6.712500e-01   p_joint 2.200000e-02

Joint ci ratio: 9.422466e-02	ci left: 2.299049e-02	ci right 2.527776e-02	k: 1688	n:70000
Cons ci ratio: 1.037623e-02	ci left: 6.674336e-01	ci right 6.744094e-01	k: 46965	n:70000
KS ci ratio: 1.856532e-01	ci left: 5.740888e-03	ci right 6.929163e-03	k: 442	n:70000
PIAS2   70000 perm   16 sec   (4305 perm/sec)   p_kst 6.314286e-03   p_cons 6.709286e-01   p_joint 2.411429e-02

Joint ci ratio: 8.000023e-02	ci left: 2.797060e-02	ci right 3.031371e-02	k: 2330	n:80000
Cons ci ratio: 9.704515e-03	ci left: 6.677318e-01	ci right 6.742558e-01	k: 53680	n:80000
KS ci ratio: 1.735397e-01	ci left: 5.787356e-03	ci right 6.898901e-03	k: 506	n:80000
PIAS2   80000 perm   19 sec   (4222 perm/sec)   p_kst 6.325000e-03   p_cons 6.710000e-01   p_joint 2.912500e-02

Joint ci ratio: 8.852504e-02	ci left: 2.037749e-02	ci right 2.227576e-02	k: 1918	n:90000
Cons ci ratio: 9.146060e-03	ci left: 6.680864e-01	ci right 6.742359e-01	k: 60405	n:90000
KS ci ratio: 1.643963e-01	ci left: 5.761515e-03	ci right 6.804025e-03	k: 564	n:90000
PIAS2   90000 perm   22 sec   (4147 perm/sec)   p_kst 6.266667e-03   p_cons 6.711667e-01   p_joint 2.131111e-02

Joint ci ratio: 7.942403e-02	ci left: 2.283469e-02	ci right 2.473307e-02	k: 2377	n:100000
Cons ci ratio: 8.675476e-03	ci left: 6.683085e-01	ci right 6.741416e-01	k: 67123	n:100000
KS ci ratio: 1.564344e-01	ci left: 5.751686e-03	ci right 6.737283e-03	k: 623	n:100000
PIAS2   100000 perm   25 sec   (4071 perm/sec)   p_kst 6.230000e-03   p_cons 6.712300e-01   p_joint 2.377000e-02

Joint ci ratio: 8.687510e-02	ci left: 1.738264e-02	ci right 1.897018e-02	k: 1998	n:110000
Cons ci ratio: 8.258854e-03	ci left: 6.691345e-01	ci right 6.746928e-01	k: 73911	n:110000
KS ci ratio: 1.480088e-01	ci left: 5.867203e-03	ci right 6.813653e-03	k: 696	n:110000
PIAS2   110000 perm   27 sec   (4005 perm/sec)   p_kst 6.327273e-03   p_cons 6.719182e-01   p_joint 1.816364e-02

Joint ci ratio: 9.253799e-02	ci left: 1.405108e-02	ci right 1.542252e-02	k: 1767	n:120000
Cons ci ratio: 7.908926e-03	ci left: 6.691600e-01	ci right 6.744817e-01	k: 80619	n:120000
KS ci ratio: 1.411820e-01	ci left: 5.932488e-03	ci right 6.841614e-03	k: 765	n:120000
PIAS2   120000 perm   30 sec   (3947 perm/sec)   p_kst 6.375000e-03   p_cons 6.718250e-01   p_joint 1.472500e-02

Joint ci ratio: 7.781694e-02	ci left: 1.840057e-02	ci right 1.989792e-02	k: 2488	n:130000
Cons ci ratio: 7.609957e-03	ci left: 6.686078e-01	ci right 6.737230e-01	k: 87252	n:130000
KS ci ratio: 1.368800e-01	ci left: 5.839937e-03	ci right 6.705385e-03	k: 814	n:130000
PIAS2   130000 perm   33 sec   (3892 perm/sec)   p_kst 6.261538e-03   p_cons 6.711692e-01   p_joint 1.913846e-02

Joint ci ratio: 7.164440e-02	ci left: 2.018511e-02	ci right 2.169197e-02	k: 2930	n:140000
Cons ci ratio: 7.318750e-03	ci left: 6.695694e-01	ci right 6.744949e-01	k: 94085	n:140000
KS ci ratio: 1.315014e-01	ci left: 5.892221e-03	ci right 6.728425e-03	k: 882	n:140000
PIAS2   140000 perm   36 sec   (3842 perm/sec)   p_kst 6.300000e-03   p_cons 6.720357e-01   p_joint 2.092857e-02

Joint ci ratio: 7.468776e-02	ci left: 1.735936e-02	ci right 1.871270e-02	k: 2704	n:150000
Cons ci ratio: 7.067524e-03	ci left: 6.698446e-01	ci right 6.746021e-01	k: 100834	n:150000
KS ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
PIAS2   150000 perm   40 sec   (3789 perm/sec)   p_kst 6.286667e-03   p_cons 6.722267e-01   p_joint 1.802667e-02

Joint ci ratio: 7.601270e-02	ci left: 1.572812e-02	ci right 1.697699e-02	k: 2615	n:160000
Cons ci ratio: 6.850409e-03	ci left: 6.694492e-01	ci right 6.740571e-01	k: 107481	n:160000
KS ci ratio: 1.231400e-01	ci left: 5.906034e-03	ci right 6.687018e-03	k: 1006	n:160000
PIAS2   160000 perm   43 sec   (3738 perm/sec)   p_kst 6.287500e-03   p_cons 6.717563e-01   p_joint 1.634375e-02

Joint ci ratio: 7.602036e-02	ci left: 1.481421e-02	ci right 1.599063e-02	k: 2617	n:170000
Cons ci ratio: 6.648052e-03	ci left: 6.693735e-01	ci right 6.738442e-01	k: 114174	n:170000
KS ci ratio: 1.200825e-01	ci left: 5.855188e-03	ci right 6.608859e-03	k: 1058	n:170000
PIAS2   170000 perm   46 sec   (3688 perm/sec)   p_kst 6.223529e-03   p_cons 6.716118e-01   p_joint 1.539412e-02

Joint ci ratio: 6.910754e-02	ci left: 1.695386e-02	ci right 1.817286e-02	k: 3160	n:180000
Cons ci ratio: 6.461407e-03	ci left: 6.693915e-01	ci right 6.737363e-01	k: 120882	n:180000
KS ci ratio: 1.168196e-01	ci left: 5.853357e-03	ci right 6.584905e-03	k: 1118	n:180000
PIAS2   180000 perm   50 sec   (3633 perm/sec)   p_kst 6.211111e-03   p_cons 6.715667e-01   p_joint 1.755556e-02

Joint ci ratio: 7.134065e-02	ci left: 1.508375e-02	ci right 1.620478e-02	k: 2971	n:190000
Cons ci ratio: 6.287248e-03	ci left: 6.695780e-01	ci right 6.738063e-01	k: 127622	n:190000
KS ci ratio: 1.138575e-01	ci left: 5.846852e-03	ci right 6.557814e-03	k: 1177	n:190000
PIAS2   190000 perm   53 sec   (3567 perm/sec)   p_kst 6.194737e-03   p_cons 6.716947e-01   p_joint 1.563684e-02

Joint ci ratio: 7.088632e-02	ci left: 1.452586e-02	ci right 1.559826e-02	k: 3011	n:200000
Cons ci ratio: 6.124506e-03	ci left: 6.698874e-01	ci right 6.740076e-01	k: 134390	n:200000
KS ci ratio: 1.110197e-01	ci left: 5.850933e-03	ci right 6.543497e-03	k: 1238	n:200000
PIAS2   200000 perm   57 sec   (3524 perm/sec)   p_kst 6.190000e-03   p_cons 6.719500e-01   p_joint 1.505500e-02

Joint ci ratio: 7.011344e-02	ci left: 1.415216e-02	ci right 1.518511e-02	k: 3079	n:210000
Cons ci ratio: 5.976939e-03	ci left: 6.699348e-01	ci right 6.739557e-01	k: 141109	n:210000
KS ci ratio: 1.082165e-01	ci left: 5.873358e-03	ci right 6.549905e-03	k: 1303	n:210000
PIAS2   210000 perm   60 sec   (3481 perm/sec)   p_kst 6.204762e-03   p_cons 6.719476e-01   p_joint 1.466190e-02

Joint ci ratio: 7.441978e-02	ci left: 1.199082e-02	ci right 1.292209e-02	k: 2739	n:220000
Cons ci ratio: 5.839128e-03	ci left: 6.700109e-01	ci right 6.739391e-01	k: 147835	n:220000
KS ci ratio: 1.060451e-01	ci left: 5.845260e-03	ci right 6.504216e-03	k: 1357	n:220000
PIAS2   220000 perm   64 sec   (3438 perm/sec)   p_kst 6.168182e-03   p_cons 6.719773e-01   p_joint 1.245000e-02

Joint ci ratio: 7.318010e-02	ci left: 1.187060e-02	ci right 1.277653e-02	k: 2833	n:230000
Cons ci ratio: 5.715725e-03	ci left: 6.696720e-01	ci right 6.735150e-01	k: 154467	n:230000
KS ci ratio: 1.040364e-01	ci left: 5.815495e-03	ci right 6.457917e-03	k: 1410	n:230000
PIAS2   230000 perm   68 sec   (3397 perm/sec)   p_kst 6.130435e-03   p_cons 6.715957e-01   p_joint 1.231739e-02

Joint ci ratio: 6.904083e-02	ci left: 1.279634e-02	ci right 1.371547e-02	k: 3180	n:240000
Cons ci ratio: 5.595537e-03	ci left: 6.697003e-01	ci right 6.734622e-01	k: 161180	n:240000
KS ci ratio: 1.020325e-01	ci left: 5.800500e-03	ci right 6.428184e-03	k: 1466	n:240000
PIAS2   240000 perm   72 sec   (3325 perm/sec)   p_kst 6.108333e-03   p_cons 6.715833e-01   p_joint 1.325000e-02

Joint ci ratio: 6.908138e-02	ci left: 1.227651e-02	ci right 1.315884e-02	k: 3178	n:250000
Cons ci ratio: 5.481532e-03	ci left: 6.698152e-01	ci right 6.735008e-01	k: 167915	n:250000
KS ci ratio: 9.984379e-02	ci left: 5.821920e-03	ci right 6.437615e-03	k: 1531	n:250000
PIAS2   250000 perm   76 sec   (3285 perm/sec)   p_kst 6.124000e-03   p_cons 6.716600e-01   p_joint 1.271200e-02

Outputting figure to mutsig2_images.part000000000130/PIAS2.5_1997_250000_0.006124_0.67166_0.012712.png
                gene_name: PIAS2
               theta_stop: 0.100 
                    nperm: 250000 
                     p_ks: 0.0061 
        ci_ks_bounds_left: 0.0058 
       ci_ks_bounds_right: 0.0064 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 42 percent done.
PGM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
Cons ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
KS ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
PGM3   10000 perm   2 sec   (5728 perm/sec)   p_kst 9.052000e-01   p_cons 3.924000e-01   p_joint 7.886000e-01

Outputting figure to mutsig2_images.part000000000130/PGM3.4_1677_10000_0.9052_0.3924_0.7886.png
                gene_name: PGM3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 43 percent done.
PHACTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 5.527957e-02	ci left: 3.252519e-01	ci right 3.438446e-01	k: 3345	n:10000
PHACTR4   10000 perm   2 sec   (5595 perm/sec)   p_kst 3.345000e-01   p_cons 3.070000e-02   p_joint 1.120000e-01

Joint ci ratio: 8.570058e-02	ci left: 9.062716e-02	ci right 9.879111e-02	k: 1893	n:20000
Cons ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
KS ci ratio: 3.840086e-02	ci left: 3.359215e-01	ci right 3.491243e-01	k: 6850	n:20000
PHACTR4   20000 perm   4 sec   (5025 perm/sec)   p_kst 3.425000e-01   p_cons 3.200000e-02   p_joint 9.465000e-02

Joint ci ratio: 7.841165e-02	ci left: 7.387676e-02	ci right 7.993881e-02	k: 2306	n:30000
Cons ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
KS ci ratio: 3.151610e-02	ci left: 3.348378e-01	ci right 3.455931e-01	k: 10206	n:30000
PHACTR4   30000 perm   6 sec   (4813 perm/sec)   p_kst 3.402000e-01   p_cons 3.213333e-02   p_joint 7.686667e-02

Joint ci ratio: 7.555567e-02	ci left: 6.066285e-02	ci right 6.545082e-02	k: 2521	n:40000
Cons ci ratio: 1.085013e-01	ci left: 2.988292e-02	ci right 3.333552e-02	k: 1263	n:40000
KS ci ratio: 2.736125e-02	ci left: 3.344600e-01	ci right 3.437633e-01	k: 13564	n:40000
PHACTR4   40000 perm   9 sec   (4677 perm/sec)   p_kst 3.391000e-01   p_cons 3.157500e-02   p_joint 6.302500e-02

Joint ci ratio: 6.012998e-02	ci left: 7.597954e-02	ci right 8.070956e-02	k: 3916	n:50000
Cons ci ratio: 9.688852e-02	ci left: 3.016204e-02	ci right 3.325265e-02	k: 1584	n:50000
KS ci ratio: 2.445655e-02	ci left: 3.352490e-01	ci right 3.435696e-01	k: 16970	n:50000
PHACTR4   50000 perm   11 sec   (4576 perm/sec)   p_kst 3.394000e-01   p_cons 3.168000e-02   p_joint 7.832000e-02

Outputting figure to mutsig2_images.part000000000130/PHACTR4.4_2211_50000_0.3394_0.03168_0.07832.png
                gene_name: PHACTR4
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 45 percent done.
PHF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
KS ci ratio: 2.009549e-02	ci left: 7.838091e-01	ci right 7.998206e-01	k: 7919	n:10000
PHF15   10000 perm   2 sec   (5378 perm/sec)   p_kst 7.919000e-01   p_cons 3.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF15.4_2413_10000_0.7919_0.3826_1.png
                gene_name: PHF15
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
PHKA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
PHKA1   10000 perm   2 sec   (5079 perm/sec)   p_kst 3.831000e-01   p_cons 5.532000e-01   p_joint 4.469000e-01

Outputting figure to mutsig2_images.part000000000130/PHKA1.4_3800_10000_0.3831_0.5532_0.4469.png
                gene_name: PHKA1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 48 percent done.
PHOX2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
PHOX2B   10000 perm   2 sec   (6351 perm/sec)   p_kst 7.539000e-01   p_cons 2.059000e-01   p_joint 4.488000e-01

Outputting figure to mutsig2_images.part000000000130/PHOX2B.4_957_10000_0.7539_0.2059_0.4488.png
                gene_name: PHOX2B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 50 percent done.
PI4KB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
KS ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
PI4KB   10000 perm   2 sec   (5684 perm/sec)   p_kst 8.367000e-01   p_cons 7.589000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PI4KB.4_2535_10000_0.8367_0.7589_1.png
                gene_name: PI4KB
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
PIBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
Cons ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
KS ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
PIBF1   10000 perm   2 sec   (5268 perm/sec)   p_kst 3.437000e-01   p_cons 3.548000e-01   p_joint 4.312000e-01

Outputting figure to mutsig2_images.part000000000130/PIBF1.4_2342_10000_0.3437_0.3548_0.4312.png
                gene_name: PIBF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 53 percent done.
PICALM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
Cons ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
KS ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
PICALM   10000 perm   2 sec   (5643 perm/sec)   p_kst 1.581000e-01   p_cons 3.104000e-01   p_joint 1.090000e-01

Joint ci ratio: 6.989336e-02	ci left: 1.311297e-01	ci right 1.406765e-01	k: 2717	n:20000
Cons ci ratio: 4.172385e-02	ci left: 2.997660e-01	ci right 3.125904e-01	k: 6123	n:20000
KS ci ratio: 6.616409e-02	ci left: 1.443378e-01	ci right 1.542644e-01	k: 2985	n:20000
PICALM   20000 perm   4 sec   (5059 perm/sec)   p_kst 1.492500e-01   p_cons 3.061500e-01   p_joint 1.358500e-01

Outputting figure to mutsig2_images.part000000000130/PICALM.4_2067_20000_0.14925_0.30615_0.13585.png
                gene_name: PICALM
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 55 percent done.
PID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
PID1   10000 perm   2 sec   (5217 perm/sec)   p_kst 8.596000e-01   p_cons 1.120000e-01   p_joint 3.439000e-01

Joint ci ratio: 3.494469e-02	ci left: 3.793945e-01	ci right 3.929386e-01	k: 7723	n:20000
Cons ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
KS ci ratio: 1.099812e-02	ci left: 8.591714e-01	ci right 8.687226e-01	k: 17280	n:20000
PID1   20000 perm   4 sec   (5189 perm/sec)   p_kst 8.640000e-01   p_cons 1.187500e-01   p_joint 3.861500e-01

Outputting figure to mutsig2_images.part000000000130/PID1.4_793_20000_0.864_0.11875_0.38615.png
                gene_name: PID1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 57 percent done.
PGM2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
Cons ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
KS ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
PGM2L1   10000 perm   2 sec   (5927 perm/sec)   p_kst 8.352000e-01   p_cons 4.700000e-03   p_joint 3.400000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
KS ci ratio: 1.220582e-02	ci left: 8.324146e-01	ci right 8.426871e-01	k: 16752	n:20000
PGM2L1   20000 perm   4 sec   (5197 perm/sec)   p_kst 8.376000e-01   p_cons 4.550000e-03   p_joint 2.950000e-02

Joint ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
Cons ci ratio: 3.391472e-01	ci left: 3.682707e-03	ci right 5.215703e-03	k: 132	n:30000
KS ci ratio: 1.000489e-02	ci left: 8.322996e-01	ci right 8.407018e-01	k: 25096	n:30000
PGM2L1   30000 perm   6 sec   (4971 perm/sec)   p_kst 8.365333e-01   p_cons 4.400000e-03   p_joint 5.143333e-02

Joint ci ratio: 9.052868e-02	ci left: 4.274445e-02	ci right 4.682196e-02	k: 1790	n:40000
Cons ci ratio: 3.008971e-01	ci left: 3.589952e-03	ci right 4.883651e-03	k: 168	n:40000
KS ci ratio: 8.655971e-03	ci left: 8.331416e-01	ci right 8.404095e-01	k: 33472	n:40000
PGM2L1   40000 perm   8 sec   (4820 perm/sec)   p_kst 8.368000e-01   p_cons 4.200000e-03   p_joint 4.475000e-02

Joint ci ratio: 7.370707e-02	ci left: 5.156319e-02	ci right 5.552884e-02	k: 2676	n:50000
Cons ci ratio: 2.631017e-01	ci left: 3.838791e-03	ci right 5.019883e-03	k: 220	n:50000
KS ci ratio: 7.752866e-03	ci left: 8.331483e-01	ci right 8.396526e-01	k: 41821	n:50000
PGM2L1   50000 perm   11 sec   (4697 perm/sec)   p_kst 8.364200e-01   p_cons 4.400000e-03   p_joint 5.352000e-02

Joint ci ratio: 7.141309e-02	ci left: 4.610651e-02	ci right 4.953740e-02	k: 2868	n:60000
Cons ci ratio: 2.371436e-01	ci left: 3.995881e-03	ci right 5.086230e-03	k: 271	n:60000
KS ci ratio: 7.103705e-03	ci left: 8.324083e-01	ci right 8.383592e-01	k: 50124	n:60000
PGM2L1   60000 perm   13 sec   (4591 perm/sec)   p_kst 8.354000e-01   p_cons 4.516667e-03   p_joint 4.780000e-02

Joint ci ratio: 7.005481e-02	ci left: 4.131242e-02	ci right 4.432563e-02	k: 2996	n:70000
Cons ci ratio: 2.200174e-01	ci left: 4.017668e-03	ci right 5.024084e-03	k: 315	n:70000
KS ci ratio: 6.594835e-03	ci left: 8.318698e-01	ci right 8.373882e-01	k: 58425	n:70000
PGM2L1   70000 perm   16 sec   (4496 perm/sec)   p_kst 8.346429e-01   p_cons 4.500000e-03   p_joint 4.280000e-02

Joint ci ratio: 6.856839e-02	ci left: 3.790255e-02	ci right 4.060600e-02	k: 3139	n:80000
Cons ci ratio: 2.058485e-01	ci left: 4.047996e-03	ci right 4.988493e-03	k: 360	n:80000
KS ci ratio: 6.165101e-03	ci left: 8.322208e-01	ci right 8.373799e-01	k: 66785	n:80000
PGM2L1   80000 perm   18 sec   (4408 perm/sec)   p_kst 8.348125e-01   p_cons 4.500000e-03   p_joint 3.923750e-02

Joint ci ratio: 6.624938e-02	ci left: 3.620256e-02	ci right 3.869403e-02	k: 3369	n:90000
Cons ci ratio: 1.924464e-01	ci left: 4.147234e-03	ci right 5.040714e-03	k: 412	n:90000
KS ci ratio: 5.818856e-03	ci left: 8.320669e-01	ci right 8.369337e-01	k: 75106	n:90000
PGM2L1   90000 perm   21 sec   (4327 perm/sec)   p_kst 8.345111e-01   p_cons 4.577778e-03   p_joint 3.743333e-02

Joint ci ratio: 6.594399e-02	ci left: 3.300337e-02	ci right 3.526376e-02	k: 3412	n:100000
Cons ci ratio: 1.825486e-01	ci left: 4.170935e-03	ci right 5.018195e-03	k: 458	n:100000
KS ci ratio: 5.529259e-03	ci left: 8.317395e-01	ci right 8.363611e-01	k: 83406	n:100000
PGM2L1   100000 perm   24 sec   (4244 perm/sec)   p_kst 8.340600e-01   p_cons 4.580000e-03   p_joint 3.412000e-02

Joint ci ratio: 6.782372e-02	ci left: 2.847220e-02	ci right 3.047998e-02	k: 3241	n:110000
Cons ci ratio: 1.716617e-01	ci left: 4.313079e-03	ci right 5.131553e-03	k: 518	n:110000
KS ci ratio: 5.262516e-03	ci left: 8.323453e-01	ci right 8.367461e-01	k: 91801	n:110000
PGM2L1   110000 perm   26 sec   (4170 perm/sec)   p_kst 8.345545e-01   p_cons 4.709091e-03   p_joint 2.946364e-02

Joint ci ratio: 6.952419e-02	ci left: 2.491031e-02	ci right 2.671271e-02	k: 3096	n:120000
Cons ci ratio: 1.629402e-01	ci left: 4.408794e-03	ci right 5.198763e-03	k: 575	n:120000
KS ci ratio: 5.041139e-03	ci left: 8.322930e-01	ci right 8.365075e-01	k: 100129	n:120000
PGM2L1   120000 perm   29 sec   (4098 perm/sec)   p_kst 8.344083e-01   p_cons 4.791667e-03   p_joint 2.580000e-02

Joint ci ratio: 6.580757e-02	ci left: 2.569417e-02	ci right 2.745011e-02	k: 3453	n:130000
Cons ci ratio: 1.562964e-01	ci left: 4.438918e-03	ci right 5.198814e-03	k: 625	n:130000
KS ci ratio: 4.842839e-03	ci left: 8.324067e-01	ci right 8.364553e-01	k: 108477	n:130000
PGM2L1   130000 perm   32 sec   (4030 perm/sec)   p_kst 8.344385e-01   p_cons 4.807692e-03   p_joint 2.656154e-02

Joint ci ratio: 6.235155e-02	ci left: 2.660035e-02	ci right 2.831930e-02	k: 3843	n:140000
Cons ci ratio: 1.514205e-01	ci left: 4.403430e-03	ci right 5.131601e-03	k: 666	n:140000
KS ci ratio: 4.665273e-03	ci left: 8.325643e-01	ci right 8.364646e-01	k: 116833	n:140000
PGM2L1   140000 perm   35 sec   (3971 perm/sec)   p_kst 8.345214e-01   p_cons 4.757143e-03   p_joint 2.745000e-02

Joint ci ratio: 5.824330e-02	ci left: 2.845890e-02	ci right 3.017270e-02	k: 4396	n:150000
Cons ci ratio: 1.466622e-01	ci left: 4.392261e-03	ci right 5.093760e-03	k: 710	n:150000
KS ci ratio: 4.502424e-03	ci left: 8.329176e-01	ci right 8.366828e-01	k: 125221	n:150000
PGM2L1   150000 perm   38 sec   (3917 perm/sec)   p_kst 8.348067e-01   p_cons 4.733333e-03   p_joint 2.930667e-02

Joint ci ratio: 4.911971e-02	ci left: 3.734016e-02	ci right 3.922662e-02	k: 6124	n:160000
Cons ci ratio: 1.258734e-01	ci left: 5.645606e-03	ci right 6.409960e-03	k: 963	n:160000
KS ci ratio: 4.357384e-03	ci left: 8.331093e-01	ci right 8.367536e-01	k: 133590	n:160000
PGM2L1   160000 perm   41 sec   (3859 perm/sec)   p_kst 8.349375e-01   p_cons 6.018750e-03   p_joint 3.827500e-02

Joint ci ratio: 3.945140e-02	ci left: 5.380437e-02	ci right 5.597554e-02	k: 9330	n:170000
Cons ci ratio: 1.213575e-01	ci left: 5.729662e-03	ci right 6.475568e-03	k: 1036	n:170000
KS ci ratio: 4.223256e-03	ci left: 8.334278e-01	ci right 8.369608e-01	k: 141984	n:170000
PGM2L1   170000 perm   45 sec   (3798 perm/sec)   p_kst 8.352000e-01   p_cons 6.094118e-03   p_joint 5.488235e-02

Joint ci ratio: 3.834374e-02	ci left: 5.382458e-02	ci right 5.593423e-02	k: 9877	n:180000
Cons ci ratio: 1.179924e-01	ci left: 5.734704e-03	ci right 6.459120e-03	k: 1096	n:180000
KS ci ratio: 4.099626e-03	ci left: 8.337903e-01	ci right 8.372211e-01	k: 150392	n:180000
PGM2L1   180000 perm   48 sec   (3740 perm/sec)   p_kst 8.355111e-01   p_cons 6.088889e-03   p_joint 5.487222e-02

Joint ci ratio: 3.472721e-02	ci left: 6.175495e-02	ci right 6.394262e-02	k: 11940	n:190000
Cons ci ratio: 1.145940e-01	ci left: 5.770148e-03	ci right 6.476627e-03	k: 1162	n:190000
KS ci ratio: 3.994568e-03	ci left: 8.335399e-01	ci right 8.368814e-01	k: 158691	n:190000
PGM2L1   190000 perm   52 sec   (3681 perm/sec)   p_kst 8.352158e-01   p_cons 6.115789e-03   p_joint 6.284211e-02

Joint ci ratio: 3.414375e-02	ci left: 6.077336e-02	ci right 6.288936e-02	k: 12365	n:200000
Cons ci ratio: 1.113821e-01	ci left: 5.812039e-03	ci right 6.502392e-03	k: 1230	n:200000
KS ci ratio: 3.893575e-03	ci left: 8.335717e-01	ci right 8.368286e-01	k: 167041	n:200000
PGM2L1   200000 perm   55 sec   (3624 perm/sec)   p_kst 8.352050e-01   p_cons 6.150000e-03   p_joint 6.182500e-02

Joint ci ratio: 3.407449e-02	ci left: 5.827465e-02	ci right 6.029944e-02	k: 12449	n:210000
Cons ci ratio: 1.089334e-01	ci left: 5.794592e-03	ci right 6.466769e-03	k: 1286	n:210000
KS ci ratio: 3.802043e-03	ci left: 8.334437e-01	ci right 8.366232e-01	k: 175358	n:210000
PGM2L1   210000 perm   59 sec   (3569 perm/sec)   p_kst 8.350381e-01   p_cons 6.123810e-03   p_joint 5.928095e-02

Joint ci ratio: 3.454436e-02	ci left: 5.433948e-02	ci right 5.625408e-02	k: 12164	n:220000
Cons ci ratio: 1.066393e-01	ci left: 5.778882e-03	ci right 6.434234e-03	k: 1342	n:220000
KS ci ratio: 3.710299e-03	ci left: 8.338027e-01	ci right 8.369066e-01	k: 183779	n:220000
PGM2L1   220000 perm   63 sec   (3518 perm/sec)   p_kst 8.353591e-01   p_cons 6.100000e-03   p_joint 5.529091e-02

Joint ci ratio: 3.249061e-02	ci left: 5.855387e-02	ci right 6.049203e-02	k: 13689	n:230000
Cons ci ratio: 1.045220e-01	ci left: 5.760439e-03	ci right 6.399931e-03	k: 1397	n:230000
KS ci ratio: 3.628203e-03	ci left: 8.338781e-01	ci right 8.369134e-01	k: 192142	n:230000
PGM2L1   230000 perm   66 sec   (3466 perm/sec)   p_kst 8.354000e-01   p_cons 6.073913e-03   p_joint 5.951739e-02

Joint ci ratio: 3.176543e-02	ci left: 5.871812e-02	ci right 6.061753e-02	k: 14319	n:240000
Cons ci ratio: 1.016498e-01	ci left: 5.845173e-03	ci right 6.475176e-03	k: 1477	n:240000
KS ci ratio: 3.552995e-03	ci left: 8.338183e-01	ci right 8.367903e-01	k: 200474	n:240000
PGM2L1   240000 perm   70 sec   (3416 perm/sec)   p_kst 8.353083e-01   p_cons 6.154167e-03   p_joint 5.966250e-02

Joint ci ratio: 3.154253e-02	ci left: 5.726554e-02	ci right 5.910472e-02	k: 14545	n:250000
Cons ci ratio: 9.900200e-02	ci left: 5.923349e-03	ci right 6.544182e-03	k: 1557	n:250000
KS ci ratio: 3.478834e-03	ci left: 8.340369e-01	ci right 8.369473e-01	k: 208874	n:250000
PGM2L1   250000 perm   74 sec   (3370 perm/sec)   p_kst 8.354960e-01   p_cons 6.228000e-03   p_joint 5.818000e-02

Outputting figure to mutsig2_images.part000000000130/PGM2L1.3_1925_250000_0.8355_0.006228_0.05818.png
                gene_name: PGM2L1
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0059 
     ci_cons_bounds_right: 0.0065 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.059 

Current progress: 58 percent done.
PHACTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
Cons ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
KS ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
PHACTR1   10000 perm   2 sec   (6066 perm/sec)   p_kst 2.847000e-01   p_cons 5.355000e-01   p_joint 3.321000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR1.3_1795_10000_0.2847_0.5355_0.3321.png
                gene_name: PHACTR1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 60 percent done.
PHF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
Cons ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
PHF12   10000 perm   2 sec   (5584 perm/sec)   p_kst 3.010000e-02   p_cons 4.783000e-01   p_joint 9.190000e-02

Joint ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
Cons ci ratio: 2.799224e-02	ci left: 4.880970e-01	ci right 5.020045e-01	k: 9901	n:20000
KS ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
PHF12   20000 perm   4 sec   (4995 perm/sec)   p_kst 3.035000e-02   p_cons 4.950500e-01   p_joint 4.850000e-02

Joint ci ratio: 1.017963e-01	ci left: 4.469747e-02	ci right 4.952406e-02	k: 1412	n:30000
Cons ci ratio: 2.292712e-02	ci left: 4.878267e-01	ci right 4.991745e-01	k: 14805	n:30000
KS ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
PHF12   30000 perm   6 sec   (4764 perm/sec)   p_kst 3.003333e-02   p_cons 4.935000e-01   p_joint 4.706667e-02

Joint ci ratio: 6.113636e-02	ci left: 9.034352e-02	ci right 9.606570e-02	k: 3727	n:40000
Cons ci ratio: 1.977151e-02	ci left: 4.907132e-01	ci right 5.005374e-01	k: 19825	n:40000
KS ci ratio: 1.106905e-01	ci left: 2.871485e-02	ci right 3.210378e-02	k: 1215	n:40000
PHF12   40000 perm   9 sec   (4600 perm/sec)   p_kst 3.037500e-02   p_cons 4.956250e-01   p_joint 9.317500e-02

Joint ci ratio: 5.784518e-02	ci left: 8.168151e-02	ci right 8.656690e-02	k: 4205	n:50000
Cons ci ratio: 1.767034e-02	ci left: 4.916279e-01	ci right 5.004126e-01	k: 24801	n:50000
KS ci ratio: 1.010100e-01	ci left: 2.776112e-02	ci right 3.073387e-02	k: 1461	n:50000
PHF12   50000 perm   11 sec   (4490 perm/sec)   p_kst 2.922000e-02   p_cons 4.960200e-01   p_joint 8.410000e-02

Joint ci ratio: 5.546533e-02	ci left: 7.471448e-02	ci right 7.899322e-02	k: 4610	n:60000
Cons ci ratio: 1.611588e-02	ci left: 4.924746e-01	ci right 5.004924e-01	k: 29789	n:60000
KS ci ratio: 9.257403e-02	ci left: 2.767178e-02	ci right 3.037403e-02	k: 1740	n:60000
PHF12   60000 perm   14 sec   (4384 perm/sec)   p_kst 2.900000e-02   p_cons 4.964833e-01   p_joint 7.683333e-02

Outputting figure to mutsig2_images.part000000000130/PHF12.3_3101_60000_0.029_0.49648_0.076833.png
                gene_name: PHF12
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.079 

Current progress: 62 percent done.
PHF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
Cons ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
KS ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
PHF6   10000 perm   2 sec   (6274 perm/sec)   p_kst 2.229000e-01   p_cons 4.063000e-01   p_joint 3.057000e-01

Outputting figure to mutsig2_images.part000000000130/PHF6.3_1239_10000_0.2229_0.4063_0.3057.png
                gene_name: PHF6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 63 percent done.
PHF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
Cons ci ratio: 3.316938e-02	ci left: 5.729622e-01	ci right 5.923896e-01	k: 5827	n:10000
KS ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
PHF8   10000 perm   2 sec   (5387 perm/sec)   p_kst 2.576000e-01   p_cons 5.827000e-01   p_joint 6.521000e-01

Outputting figure to mutsig2_images.part000000000130/PHF8.3_3441_10000_0.2576_0.5827_0.6521.png
                gene_name: PHF8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 65 percent done.
PHGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
Cons ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
KS ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
PHGDH   10000 perm   2 sec   (5938 perm/sec)   p_kst 2.624000e-01   p_cons 4.262000e-01   p_joint 4.287000e-01

Outputting figure to mutsig2_images.part000000000130/PHGDH.3_1650_10000_0.2624_0.4262_0.4287.png
                gene_name: PHGDH
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 67 percent done.
PHKG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
PHKG2   10000 perm   2 sec   (6390 perm/sec)   p_kst 4.824000e-01   p_cons 6.600000e-02   p_joint 2.537000e-01

Joint ci ratio: 4.390353e-02	ci left: 2.787008e-01	ci right 2.912618e-01	k: 5699	n:20000
Cons ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
KS ci ratio: 2.905697e-02	ci left: 4.694571e-01	ci right 4.833498e-01	k: 9528	n:20000
PHKG2   20000 perm   4 sec   (5599 perm/sec)   p_kst 4.764000e-01   p_cons 5.985000e-02   p_joint 2.849500e-01

Joint ci ratio: 4.352469e-02	ci left: 2.081799e-01	ci right 2.174758e-01	k: 6384	n:30000
Cons ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
KS ci ratio: 2.378269e-02	ci left: 4.695350e-01	ci right 4.808698e-01	k: 14256	n:30000
PHKG2   30000 perm   6 sec   (5315 perm/sec)   p_kst 4.752000e-01   p_cons 5.893333e-02   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000130/PHKG2.3_1303_30000_0.4752_0.058933_0.2128.png
                gene_name: PHKG2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
PHOSPHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
PHOSPHO2   10000 perm   2 sec   (6485 perm/sec)   p_kst 8.926000e-01   p_cons 7.053000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHOSPHO2.3_730_10000_0.8926_0.7053_1.png
                gene_name: PHOSPHO2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PICK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
PICK1   10000 perm   2 sec   (6359 perm/sec)   p_kst 3.664000e-01   p_cons 2.946000e-01   p_joint 4.322000e-01

Outputting figure to mutsig2_images.part000000000130/PICK1.3_1296_10000_0.3664_0.2946_0.4322.png
                gene_name: PICK1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 72 percent done.
PGPEP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
Cons ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
PGPEP1L   10000 perm   1 sec   (6971 perm/sec)   p_kst 2.945000e-01   p_cons 9.345000e-01   p_joint 6.001000e-01

Outputting figure to mutsig2_images.part000000000130/PGPEP1L.2_607_10000_0.2945_0.9345_0.6001.png
                gene_name: PGPEP1L
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 73 percent done.
PHACTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
Cons ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
KS ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
PHACTR2   10000 perm   2 sec   (6108 perm/sec)   p_kst 6.710000e-02   p_cons 8.910000e-02   p_joint 5.115000e-01

Joint ci ratio: 1.373386e-02	ci left: 7.973179e-01	ci right 8.083939e-01	k: 16058	n:20000
Cons ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
KS ci ratio: 1.031871e-01	ci left: 6.381704e-02	ci right 7.080940e-02	k: 1345	n:20000
PHACTR2   20000 perm   4 sec   (5438 perm/sec)   p_kst 6.725000e-02   p_cons 8.805000e-02   p_joint 8.029000e-01

Joint ci ratio: 1.520384e-02	ci left: 6.837606e-01	ci right 6.942695e-01	k: 20671	n:30000
Cons ci ratio: 7.307038e-02	ci left: 8.432591e-02	ci right 9.075423e-02	k: 2625	n:30000
KS ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
PHACTR2   30000 perm   6 sec   (5181 perm/sec)   p_kst 6.630000e-02   p_cons 8.750000e-02   p_joint 6.890333e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR2.2_2007_30000_0.0663_0.0875_0.68903.png
                gene_name: PHACTR2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 75 percent done.
PHF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
Cons ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KS ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
PHF1   10000 perm   2 sec   (6292 perm/sec)   p_kst 4.196000e-01   p_cons 1.634000e-01   p_joint 2.321000e-01

Outputting figure to mutsig2_images.part000000000130/PHF1.2_1760_10000_0.4196_0.1634_0.2321.png
                gene_name: PHF1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
PHF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
Cons ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
PHF19   10000 perm   2 sec   (6439 perm/sec)   p_kst 8.195000e-01   p_cons 2.594000e-01   p_joint 4.809000e-01

Outputting figure to mutsig2_images.part000000000130/PHF19.2_1958_10000_0.8195_0.2594_0.4809.png
                gene_name: PHF19
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 78 percent done.
PHF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
PHF2   10000 perm   2 sec   (5843 perm/sec)   p_kst 1.449000e-01   p_cons 2.916000e-01   p_joint 1.333000e-01

Outputting figure to mutsig2_images.part000000000130/PHF2.2_3379_10000_0.1449_0.2916_0.1333.png
                gene_name: PHF2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 80 percent done.
PHF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
KS ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
PHF21A   10000 perm   2 sec   (6195 perm/sec)   p_kst 8.885000e-01   p_cons 8.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF21A.2_2137_10000_0.8885_0.8321_1.png
                gene_name: PHF21A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PHF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
PHF7   10000 perm   2 sec   (6620 perm/sec)   p_kst 4.632000e-01   p_cons 5.350000e-02   p_joint 1

Joint ci ratio: 1.188925e-01	ci left: 4.847732e-02	ci right 5.465388e-02	k: 1030	n:20000
Cons ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
KS ci ratio: 2.981616e-02	ci left: 4.566196e-01	ci right 4.704910e-01	k: 9271	n:20000
PHF7   20000 perm   3 sec   (5844 perm/sec)   p_kst 4.635500e-01   p_cons 5.075000e-02   p_joint 5.150000e-02

Joint ci ratio: 9.666480e-02	ci left: 4.944925e-02	ci right 5.450463e-02	k: 1558	n:30000
Cons ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
KS ci ratio: 2.406263e-02	ci left: 4.637059e-01	ci right 4.750334e-01	k: 14081	n:30000
PHF7   30000 perm   5 sec   (5542 perm/sec)   p_kst 4.693667e-01   p_cons 5.110000e-02   p_joint 5.193333e-02

Outputting figure to mutsig2_images.part000000000130/PHF7.2_1186_30000_0.46937_0.0511_0.051933.png
                gene_name: PHF7
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.055 

Current progress: 83 percent done.
PHLDA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
Cons ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
KS ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
PHLDA1   10000 perm   2 sec   (6393 perm/sec)   p_kst 4.885000e-01   p_cons 3.042000e-01   p_joint 9.834000e-01

Outputting figure to mutsig2_images.part000000000130/PHLDA1.2_1210_10000_0.4885_0.3042_0.9834.png
                gene_name: PHLDA1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
PHTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949951e-02	ci left: 6.288939e-01	ci right 6.478255e-01	k: 6384	n:10000
Cons ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
KS ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
PHTF1   10000 perm   2 sec   (6261 perm/sec)   p_kst 3.182000e-01   p_cons 7.352000e-01   p_joint 6.384000e-01

Outputting figure to mutsig2_images.part000000000130/PHTF1.2_2361_10000_0.3182_0.7352_0.6384.png
                gene_name: PHTF1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 87 percent done.
PHTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
KS ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
PHTF2   10000 perm   2 sec   (6087 perm/sec)   p_kst 8.630000e-01   p_cons 2.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHTF2.2_2382_10000_0.863_0.2173_1.png
                gene_name: PHTF2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PHYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
Cons ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
PHYH   10000 perm   1 sec   (6958 perm/sec)   p_kst 2.010000e-02   p_cons 1.972000e-01   p_joint 6.733000e-01

Joint ci ratio: 1.937994e-02	ci left: 6.650920e-01	ci right 6.781580e-01	k: 13433	n:20000
Cons ci ratio: 5.648884e-02	ci left: 1.885395e-01	ci right 1.995496e-01	k: 3880	n:20000
KS ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
PHYH   20000 perm   3 sec   (6168 perm/sec)   p_kst 2.025000e-02   p_cons 1.940000e-01   p_joint 6.716500e-01

Joint ci ratio: 1.581009e-02	ci left: 6.666877e-01	ci right 6.773456e-01	k: 20161	n:30000
Cons ci ratio: 4.628351e-02	ci left: 1.884813e-01	ci right 1.974449e-01	k: 5788	n:30000
KS ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
PHYH   30000 perm   5 sec   (5840 perm/sec)   p_kst 2.050000e-02   p_cons 1.929333e-01   p_joint 6.720333e-01

Joint ci ratio: 2.539964e-02	ci left: 3.684571e-01	ci right 3.779613e-01	k: 14928	n:40000
Cons ci ratio: 3.996307e-02	ci left: 1.900106e-01	ci right 1.977838e-01	k: 7755	n:40000
KS ci ratio: 1.346445e-01	ci left: 1.935127e-02	ci right 2.216890e-02	k: 829	n:40000
PHYH   40000 perm   7 sec   (5640 perm/sec)   p_kst 2.072500e-02   p_cons 1.938750e-01   p_joint 3.732000e-01

Joint ci ratio: 1.673624e-02	ci left: 5.187709e-01	ci right 5.275465e-01	k: 26158	n:50000
Cons ci ratio: 3.569615e-02	ci left: 1.908398e-01	ci right 1.977958e-01	k: 9715	n:50000
KS ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
PHYH   50000 perm   9 sec   (5473 perm/sec)   p_kst 2.138000e-02   p_cons 1.943000e-01   p_joint 5.231600e-01

Joint ci ratio: 1.529168e-02	ci left: 5.187107e-01	ci right 5.267204e-01	k: 31363	n:60000
Cons ci ratio: 3.257248e-02	ci left: 1.912731e-01	ci right 1.976231e-01	k: 11666	n:60000
KS ci ratio: 1.094890e-01	ci left: 1.977027e-02	ci right 2.207640e-02	k: 1254	n:60000
PHYH   60000 perm   11 sec   (5316 perm/sec)   p_kst 2.090000e-02   p_cons 1.944333e-01   p_joint 5.227167e-01

Joint ci ratio: 1.468902e-02	ci left: 5.005889e-01	ci right 5.080107e-01	k: 35301	n:70000
Cons ci ratio: 3.015559e-02	ci left: 1.915166e-01	ci right 1.973945e-01	k: 13611	n:70000
KS ci ratio: 1.015504e-01	ci left: 1.978339e-02	ci right 2.191373e-02	k: 1458	n:70000
PHYH   70000 perm   14 sec   (5169 perm/sec)   p_kst 2.082857e-02   p_cons 1.944429e-01   p_joint 5.043000e-01

Joint ci ratio: 1.374517e-02	ci left: 5.006540e-01	ci right 5.075957e-01	k: 40330	n:80000
Cons ci ratio: 2.824357e-02	ci left: 1.913145e-01	ci right 1.968077e-01	k: 15524	n:80000
KS ci ratio: 9.576981e-02	ci left: 1.952923e-02	ci right 2.150575e-02	k: 1640	n:80000
PHYH   80000 perm   16 sec   (5039 perm/sec)   p_kst 2.050000e-02   p_cons 1.940500e-01   p_joint 5.041250e-01

Outputting figure to mutsig2_images.part000000000130/PHYH.2_1053_80000_0.0205_0.19405_0.50413.png
                gene_name: PHYH
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 90 percent done.
PHYHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
Cons ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
PHYHIP   10000 perm   1 sec   (6722 perm/sec)   p_kst 4.535000e-01   p_cons 1.341000e-01   p_joint 8.417000e-01

Outputting figure to mutsig2_images.part000000000130/PHYHIP.2_1009_10000_0.4535_0.1341_0.8417.png
                gene_name: PHYHIP
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 92 percent done.
PHYHIPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
Cons ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
PHYHIPL   10000 perm   2 sec   (6614 perm/sec)   p_kst 2.176000e-01   p_cons 3.290000e-01   p_joint 5.523000e-01

Outputting figure to mutsig2_images.part000000000130/PHYHIPL.2_1183_10000_0.2176_0.329_0.5523.png
                gene_name: PHYHIPL
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 93 percent done.
PI16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
Cons ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
PI16   10000 perm   2 sec   (6530 perm/sec)   p_kst 1.277000e-01   p_cons 9.475000e-01   p_joint 8.145000e-01

Joint ci ratio: 1.308165e-02	ci left: 8.124298e-01	ci right 8.231777e-01	k: 16357	n:20000
Cons ci ratio: 6.621660e-03	ci left: 9.428286e-01	ci right 9.491410e-01	k: 18921	n:20000
KS ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
PI16   20000 perm   3 sec   (5780 perm/sec)   p_kst 1.307000e-01   p_cons 9.460500e-01   p_joint 8.178500e-01

Outputting figure to mutsig2_images.part000000000130/PI16.2_1416_20000_0.1307_0.94605_0.81785.png
                gene_name: PI16
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 95 percent done.
PI4K2A
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 97 percent done.
PIAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
Cons ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
PIAS1   10000 perm   2 sec   (5956 perm/sec)   p_kst 7.000000e-04   p_cons 1.140000e-02   p_joint 1.900000e-03

Joint ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
Cons ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
PIAS1   20000 perm   4 sec   (5300 perm/sec)   p_kst 6.500000e-04   p_cons 1.110000e-02   p_joint 1.000000e-03

Joint ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
Cons ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
PIAS1   30000 perm   6 sec   (4799 perm/sec)   p_kst 6.333333e-04   p_cons 1.060000e-02   p_joint 6.333333e-04

Joint ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
Cons ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
KS ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
PIAS1   40000 perm   8 sec   (4768 perm/sec)   p_kst 6.750000e-04   p_cons 1.017500e-02   p_joint 6.750000e-04

Joint ci ratio: 1.385805e+00	ci left: 5.628905e-05	ci right 2.884321e-04	k: 7	n:50000
Cons ci ratio: 1.718423e-01	ci left: 9.414392e-03	ci right 1.120315e-02	k: 514	n:50000
KS ci ratio: 6.927359e-01	ci left: 4.212976e-04	ci right 8.799261e-04	k: 31	n:50000
PIAS1   50000 perm   11 sec   (4712 perm/sec)   p_kst 6.200000e-04   p_cons 1.028000e-02   p_joint 1.400000e-04

Joint ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
Cons ci ratio: 1.559799e-01	ci left: 9.603672e-03	ci right 1.124420e-02	k: 624	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
PIAS1   60000 perm   13 sec   (4645 perm/sec)   p_kst 5.500000e-04   p_cons 1.040000e-02   p_joint 1.166667e-04

Joint ci ratio: 1.306573e+00	ci left: 4.934171e-05	ci right 2.251759e-04	k: 8	n:70000
Cons ci ratio: 1.447274e-01	ci left: 9.620355e-03	ci right 1.113493e-02	k: 725	n:70000
KS ci ratio: 6.120175e-01	ci left: 4.082673e-04	ci right 7.780431e-04	k: 40	n:70000
PIAS1   70000 perm   15 sec   (4568 perm/sec)   p_kst 5.714286e-04   p_cons 1.035714e-02   p_joint 1.142857e-04

Joint ci ratio: 1.306585e+00	ci left: 4.317386e-05	ci right 1.970303e-04	k: 8	n:80000
Cons ci ratio: 1.359371e-01	ci left: 9.587756e-03	ci right 1.099810e-02	k: 822	n:80000
KS ci ratio: 5.976300e-01	ci left: 3.783992e-04	ci right 7.095820e-04	k: 42	n:80000
PIAS1   80000 perm   18 sec   (4491 perm/sec)   p_kst 5.250000e-04   p_cons 1.027500e-02   p_joint 1.000000e-04

Joint ci ratio: 5.598444e-01	ci left: 3.932633e-04	ci right 7.070612e-04	k: 48	n:90000
Cons ci ratio: 1.264406e-01	ci left: 9.898140e-03	ci right 1.124480e-02	k: 950	n:90000
KS ci ratio: 5.598444e-01	ci left: 3.932633e-04	ci right 7.070612e-04	k: 48	n:90000
PIAS1   90000 perm   20 sec   (4416 perm/sec)   p_kst 5.333333e-04   p_cons 1.055556e-02   p_joint 5.333333e-04

Joint ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
Cons ci ratio: 1.195905e-01	ci left: 9.993906e-03	ci right 1.127472e-02	k: 1062	n:100000
KS ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
PIAS1   100000 perm   23 sec   (4343 perm/sec)   p_kst 5.400000e-04   p_cons 1.062000e-02   p_joint 5.400000e-04

Joint ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
Cons ci ratio: 1.144363e-01	ci left: 9.950195e-03	ci right 1.116673e-02	k: 1160	n:110000
KS ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
PIAS1   110000 perm   26 sec   (4269 perm/sec)   p_kst 5.181818e-04   p_cons 1.054545e-02   p_joint 5.181818e-04

Joint ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
Cons ci ratio: 1.094573e-01	ci left: 9.995829e-03	ci right 1.116134e-02	k: 1268	n:120000
KS ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
PIAS1   120000 perm   29 sec   (4200 perm/sec)   p_kst 5.083333e-04   p_cons 1.056667e-02   p_joint 5.083333e-04

Joint ci ratio: 4.787790e-01	ci left: 3.926703e-04	ci right 6.458645e-04	k: 66	n:130000
Cons ci ratio: 1.047692e-01	ci left: 1.009535e-02	ci right 1.121894e-02	k: 1384	n:130000
KS ci ratio: 4.787790e-01	ci left: 3.926703e-04	ci right 6.458645e-04	k: 66	n:130000
PIAS1   130000 perm   32 sec   (4007 perm/sec)   p_kst 5.076923e-04   p_cons 1.064615e-02   p_joint 5.076923e-04

Joint ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
Cons ci ratio: 1.007718e-01	ci left: 1.015371e-02	ci right 1.123813e-02	k: 1496	n:140000
KS ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
PIAS1   140000 perm   35 sec   (3955 perm/sec)   p_kst 5.428571e-04   p_cons 1.068571e-02   p_joint 5.428571e-04

Joint ci ratio: 4.354365e-01	ci left: 4.229221e-04	ci right 6.637362e-04	k: 80	n:150000
Cons ci ratio: 9.735269e-02	ci left: 1.017246e-02	ci right 1.121991e-02	k: 1603	n:150000
KS ci ratio: 4.354365e-01	ci left: 4.229221e-04	ci right 6.637362e-04	k: 80	n:150000
PIAS1   150000 perm   38 sec   (3903 perm/sec)   p_kst 5.333333e-04   p_cons 1.068667e-02   p_joint 5.333333e-04

Joint ci ratio: 4.301629e-01	ci left: 4.076266e-04	ci right 6.361083e-04	k: 82	n:160000
Cons ci ratio: 9.453915e-02	ci left: 1.012838e-02	ci right 1.113947e-02	k: 1700	n:160000
KS ci ratio: 4.301629e-01	ci left: 4.076266e-04	ci right 6.361083e-04	k: 82	n:160000
PIAS1   160000 perm   42 sec   (3851 perm/sec)   p_kst 5.125000e-04   p_cons 1.062500e-02   p_joint 5.125000e-04

Joint ci ratio: 4.201593e-01	ci left: 4.046599e-04	ci right 6.247235e-04	k: 86	n:170000
Cons ci ratio: 9.154542e-02	ci left: 1.018184e-02	ci right 1.116436e-02	k: 1813	n:170000
KS ci ratio: 4.201593e-01	ci left: 4.046599e-04	ci right 6.247235e-04	k: 86	n:170000
PIAS1   170000 perm   45 sec   (3785 perm/sec)   p_kst 5.058824e-04   p_cons 1.066471e-02   p_joint 5.058824e-04

Joint ci ratio: 4.085827e-01	ci left: 4.070607e-04	ci right 6.206745e-04	k: 91	n:180000
Cons ci ratio: 8.898270e-02	ci left: 1.019178e-02	ci right 1.114630e-02	k: 1919	n:180000
KS ci ratio: 4.085827e-01	ci left: 4.070607e-04	ci right 6.206745e-04	k: 91	n:180000
PIAS1   180000 perm   48 sec   (3735 perm/sec)   p_kst 5.055556e-04   p_cons 1.066111e-02   p_joint 5.055556e-04

Joint ci ratio: 4.042160e-01	ci left: 3.950860e-04	ci right 5.996053e-04	k: 93	n:190000
Cons ci ratio: 8.660222e-02	ci left: 1.020617e-02	ci right 1.113517e-02	k: 2026	n:190000
KS ci ratio: 4.042160e-01	ci left: 3.950860e-04	ci right 5.996053e-04	k: 93	n:190000
PIAS1   190000 perm   52 sec   (3672 perm/sec)   p_kst 4.894737e-04   p_cons 1.066316e-02   p_joint 4.894737e-04

Joint ci ratio: 3.958818e-01	ci left: 3.933194e-04	ci right 5.916273e-04	k: 97	n:200000
Cons ci ratio: 8.454337e-02	ci left: 1.018516e-02	ci right 1.108911e-02	k: 2126	n:200000
KS ci ratio: 3.958818e-01	ci left: 3.933194e-04	ci right 5.916273e-04	k: 97	n:200000
PIAS1   200000 perm   55 sec   (3625 perm/sec)   p_kst 4.850000e-04   p_cons 1.063000e-02   p_joint 4.850000e-04

Joint ci ratio: 3.899598e-01	ci left: 3.874638e-04	ci right 5.791454e-04	k: 100	n:210000
Cons ci ratio: 8.214142e-02	ci left: 1.028767e-02	ci right 1.117354e-02	k: 2252	n:210000
KS ci ratio: 3.899598e-01	ci left: 3.874638e-04	ci right 5.791454e-04	k: 100	n:210000
PIAS1   210000 perm   59 sec   (3578 perm/sec)   p_kst 4.761905e-04   p_cons 1.072381e-02   p_joint 4.761905e-04

Joint ci ratio: 3.753740e-01	ci left: 4.027191e-04	ci right 5.926640e-04	k: 108	n:220000
Cons ci ratio: 8.029217e-02	ci left: 1.028762e-02	ci right 1.115261e-02	k: 2357	n:220000
KS ci ratio: 3.753740e-01	ci left: 4.027191e-04	ci right 5.926640e-04	k: 108	n:220000
PIAS1   220000 perm   62 sec   (3533 perm/sec)   p_kst 4.909091e-04   p_cons 1.071364e-02   p_joint 4.909091e-04

Joint ci ratio: 3.654497e-01	ci left: 4.088688e-04	ci right 5.954000e-04	k: 114	n:230000
Cons ci ratio: 7.848197e-02	ci left: 1.030911e-02	ci right 1.115547e-02	k: 2467	n:230000
KS ci ratio: 3.654497e-01	ci left: 4.088688e-04	ci right 5.954000e-04	k: 114	n:230000
PIAS1   230000 perm   66 sec   (3489 perm/sec)   p_kst 4.956522e-04   p_cons 1.072609e-02   p_joint 4.956522e-04

Joint ci ratio: 3.533632e-01	ci left: 4.221574e-04	ci right 6.069208e-04	k: 122	n:240000
Cons ci ratio: 7.700055e-02	ci left: 1.027178e-02	ci right 1.109844e-02	k: 2563	n:240000
KS ci ratio: 3.533632e-01	ci left: 4.221574e-04	ci right 6.069208e-04	k: 122	n:240000
PIAS1   240000 perm   70 sec   (3444 perm/sec)   p_kst 5.083333e-04   p_cons 1.067917e-02   p_joint 5.083333e-04

Joint ci ratio: 3.437167e-01	ci left: 4.308208e-04	ci right 6.130846e-04	k: 129	n:250000
Cons ci ratio: 7.552825e-02	ci left: 1.025720e-02	ci right 1.106621e-02	k: 2664	n:250000
KS ci ratio: 3.437167e-01	ci left: 4.308208e-04	ci right 6.130846e-04	k: 129	n:250000
PIAS1   250000 perm   74 sec   (3400 perm/sec)   p_kst 5.160000e-04   p_cons 1.065600e-02   p_joint 5.160000e-04

Joint ci ratio: 3.360487e-01	ci left: 4.353586e-04	ci right 6.145432e-04	k: 135	n:260000
Cons ci ratio: 7.411021e-02	ci left: 1.025143e-02	ci right 1.104415e-02	k: 2767	n:260000
KS ci ratio: 3.360487e-01	ci left: 4.353586e-04	ci right 6.145432e-04	k: 135	n:260000
PIAS1   260000 perm   77 sec   (3358 perm/sec)   p_kst 5.192308e-04   p_cons 1.064231e-02   p_joint 5.192308e-04

Joint ci ratio: 3.254503e-01	ci left: 4.498010e-04	ci right 6.278722e-04	k: 144	n:270000
Cons ci ratio: 7.267965e-02	ci left: 1.027168e-02	ci right 1.104999e-02	k: 2877	n:270000
KS ci ratio: 3.254503e-01	ci left: 4.498010e-04	ci right 6.278722e-04	k: 144	n:270000
PIAS1   270000 perm   81 sec   (3317 perm/sec)   p_kst 5.333333e-04   p_cons 1.065556e-02   p_joint 5.333333e-04

Joint ci ratio: 3.221363e-01	ci left: 4.435800e-04	ci right 6.170308e-04	k: 147	n:280000
Cons ci ratio: 7.154701e-02	ci left: 1.022747e-02	ci right 1.098985e-02	k: 2969	n:280000
KS ci ratio: 3.221363e-01	ci left: 4.435800e-04	ci right 6.170308e-04	k: 147	n:280000
PIAS1   280000 perm   85 sec   (3278 perm/sec)   p_kst 5.250000e-04   p_cons 1.060357e-02   p_joint 5.250000e-04

Joint ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
Cons ci ratio: 7.013082e-02	ci left: 1.028466e-02	ci right 1.103551e-02	k: 3090	n:290000
KS ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
PIAS1   290000 perm   90 sec   (3239 perm/sec)   p_kst 5.206897e-04   p_cons 1.065517e-02   p_joint 5.206897e-04

Joint ci ratio: 3.147801e-01	ci left: 4.354763e-04	ci right 6.010879e-04	k: 154	n:300000
Cons ci ratio: 6.893667e-02	ci left: 1.029558e-02	ci right 1.103392e-02	k: 3198	n:300000
KS ci ratio: 3.147801e-01	ci left: 4.354763e-04	ci right 6.010879e-04	k: 154	n:300000
PIAS1   300000 perm   94 sec   (3202 perm/sec)   p_kst 5.133333e-04   p_cons 1.066000e-02   p_joint 5.133333e-04

Joint ci ratio: 3.098227e-01	ci left: 4.362939e-04	ci right 5.990869e-04	k: 159	n:310000
Cons ci ratio: 6.768781e-02	ci left: 1.034079e-02	ci right 1.106840e-02	k: 3317	n:310000
KS ci ratio: 3.098227e-01	ci left: 4.362939e-04	ci right 5.990869e-04	k: 159	n:310000
PIAS1   310000 perm   98 sec   (3163 perm/sec)   p_kst 5.129032e-04   p_cons 1.070000e-02   p_joint 5.129032e-04

Joint ci ratio: 3.079058e-01	ci left: 4.284251e-04	ci right 5.870988e-04	k: 161	n:320000
Cons ci ratio: 6.659264e-02	ci left: 1.035562e-02	ci right 1.107203e-02	k: 3427	n:320000
KS ci ratio: 3.079058e-01	ci left: 4.284251e-04	ci right 5.870988e-04	k: 161	n:320000
PIAS1   320000 perm   103 sec   (3120 perm/sec)   p_kst 5.031250e-04   p_cons 1.070938e-02   p_joint 5.031250e-04

Joint ci ratio: 3.032615e-01	ci left: 4.294324e-04	ci right 5.856175e-04	k: 166	n:330000
Cons ci ratio: 6.567103e-02	ci left: 1.033089e-02	ci right 1.103532e-02	k: 3524	n:330000
KS ci ratio: 3.032615e-01	ci left: 4.294324e-04	ci right 5.856175e-04	k: 166	n:330000
PIAS1   330000 perm   107 sec   (3086 perm/sec)   p_kst 5.030303e-04   p_cons 1.067879e-02   p_joint 5.030303e-04

Joint ci ratio: 2.988211e-01	ci left: 4.303974e-04	ci right 5.842067e-04	k: 171	n:340000
Cons ci ratio: 6.469644e-02	ci left: 1.033661e-02	ci right 1.103059e-02	k: 3631	n:340000
KS ci ratio: 2.988211e-01	ci left: 4.303974e-04	ci right 5.842067e-04	k: 171	n:340000
PIAS1   340000 perm   111 sec   (3053 perm/sec)   p_kst 5.029412e-04   p_cons 1.067941e-02   p_joint 5.029412e-04

Joint ci ratio: 2.937413e-01	ci left: 4.339694e-04	ci right 5.859281e-04	k: 177	n:350000
Cons ci ratio: 6.379849e-02	ci left: 1.033084e-02	ci right 1.101444e-02	k: 3734	n:350000
KS ci ratio: 2.937413e-01	ci left: 4.339694e-04	ci right 5.859281e-04	k: 177	n:350000
PIAS1   350000 perm   116 sec   (3020 perm/sec)   p_kst 5.057143e-04   p_cons 1.066857e-02   p_joint 5.057143e-04

Joint ci ratio: 2.921061e-01	ci left: 4.270618e-04	ci right 5.756153e-04	k: 179	n:360000
Cons ci ratio: 6.293693e-02	ci left: 1.032545e-02	ci right 1.099913e-02	k: 3837	n:360000
KS ci ratio: 2.921061e-01	ci left: 4.270618e-04	ci right 5.756153e-04	k: 179	n:360000
PIAS1   360000 perm   120 sec   (2988 perm/sec)   p_kst 4.972222e-04   p_cons 1.065833e-02   p_joint 4.972222e-04

Joint ci ratio: 2.873557e-01	ci left: 4.305577e-04	ci right 5.774493e-04	k: 185	n:370000
Cons ci ratio: 6.200606e-02	ci left: 1.035500e-02	ci right 1.102026e-02	k: 3953	n:370000
KS ci ratio: 2.873557e-01	ci left: 4.305577e-04	ci right 5.774493e-04	k: 185	n:370000
PIAS1   370000 perm   125 sec   (2957 perm/sec)   p_kst 5.000000e-04   p_cons 1.068378e-02   p_joint 5.000000e-04

Joint ci ratio: 2.813674e-01	ci left: 4.387790e-04	ci right 5.848028e-04	k: 193	n:380000
Cons ci ratio: 6.126765e-02	ci left: 1.033124e-02	ci right 1.098678e-02	k: 4049	n:380000
KS ci ratio: 2.813674e-01	ci left: 4.387790e-04	ci right 5.848028e-04	k: 193	n:380000
PIAS1   380000 perm   130 sec   (2928 perm/sec)   p_kst 5.078947e-04   p_cons 1.065526e-02   p_joint 5.078947e-04

Joint ci ratio: 2.792175e-01	ci left: 4.346798e-04	ci right 5.780396e-04	k: 196	n:390000
Cons ci ratio: 6.054763e-02	ci left: 1.031126e-02	ci right 1.095758e-02	k: 4146	n:390000
KS ci ratio: 2.792175e-01	ci left: 4.346798e-04	ci right 5.780396e-04	k: 196	n:390000
PIAS1   390000 perm   135 sec   (2895 perm/sec)   p_kst 5.025641e-04   p_cons 1.063077e-02   p_joint 5.025641e-04

Joint ci ratio: 2.785130e-01	ci left: 4.261377e-04	ci right 5.662635e-04	k: 197	n:400000
Cons ci ratio: 5.989521e-02	ci left: 1.027755e-02	ci right 1.091457e-02	k: 4237	n:400000
KS ci ratio: 2.785130e-01	ci left: 4.261377e-04	ci right 5.662635e-04	k: 197	n:400000
PIAS1   400000 perm   140 sec   (2863 perm/sec)   p_kst 4.925000e-04   p_cons 1.059250e-02   p_joint 4.925000e-04

Joint ci ratio: 2.757419e-01	ci left: 4.248223e-04	ci right 5.628845e-04	k: 201	n:410000
Cons ci ratio: 5.902276e-02	ci left: 1.032963e-02	ci right 1.096024e-02	k: 4363	n:410000
KS ci ratio: 2.757419e-01	ci left: 4.248223e-04	ci right 5.628845e-04	k: 201	n:410000
PIAS1   410000 perm   145 sec   (2832 perm/sec)   p_kst 4.902439e-04   p_cons 1.064146e-02   p_joint 4.902439e-04

Joint ci ratio: 2.743879e-01	ci left: 4.191408e-04	ci right 5.545723e-04	k: 203	n:420000
Cons ci ratio: 5.822667e-02	ci left: 1.036522e-02	ci right 1.098918e-02	k: 4483	n:420000
KS ci ratio: 2.743879e-01	ci left: 4.191408e-04	ci right 5.545723e-04	k: 203	n:420000
PIAS1   420000 perm   150 sec   (2802 perm/sec)   p_kst 4.833333e-04   p_cons 1.067381e-02   p_joint 4.833333e-04

Joint ci ratio: 2.678987e-01	ci left: 4.310689e-04	ci right 5.665075e-04	k: 213	n:430000
Cons ci ratio: 5.767124e-02	ci left: 1.032355e-02	ci right 1.093888e-02	k: 4570	n:430000
KS ci ratio: 2.678987e-01	ci left: 4.310689e-04	ci right 5.665075e-04	k: 213	n:430000
PIAS1   430000 perm   155 sec   (2772 perm/sec)   p_kst 4.953488e-04   p_cons 1.062791e-02   p_joint 4.953488e-04

Joint ci ratio: 2.679002e-01	ci left: 4.212716e-04	ci right 5.536328e-04	k: 213	n:440000
Cons ci ratio: 5.705715e-02	ci left: 1.031070e-02	ci right 1.091850e-02	k: 4669	n:440000
KS ci ratio: 2.679002e-01	ci left: 4.212716e-04	ci right 5.536328e-04	k: 213	n:440000
PIAS1   440000 perm   160 sec   (2742 perm/sec)   p_kst 4.840909e-04   p_cons 1.061136e-02   p_joint 4.840909e-04

Joint ci ratio: 2.636227e-01	ci left: 4.264294e-04	ci right 5.579191e-04	k: 220	n:450000
Cons ci ratio: 5.647425e-02	ci left: 1.029407e-02	ci right 1.089448e-02	k: 4766	n:450000
KS ci ratio: 2.636227e-01	ci left: 4.264294e-04	ci right 5.579191e-04	k: 220	n:450000
PIAS1   450000 perm   166 sec   (2713 perm/sec)   p_kst 4.888889e-04   p_cons 1.059111e-02   p_joint 4.888889e-04

Joint ci ratio: 2.618520e-01	ci left: 4.232514e-04	ci right 5.527408e-04	k: 223	n:460000
Cons ci ratio: 5.589723e-02	ci left: 1.028247e-02	ci right 1.087589e-02	k: 4865	n:460000
KS ci ratio: 2.618520e-01	ci left: 4.232514e-04	ci right 5.527408e-04	k: 223	n:460000
PIAS1   460000 perm   171 sec   (2684 perm/sec)   p_kst 4.847826e-04   p_cons 1.057609e-02   p_joint 4.847826e-04

Joint ci ratio: 2.589775e-01	ci left: 4.241900e-04	ci right 5.523115e-04	k: 228	n:470000
Cons ci ratio: 5.531503e-02	ci left: 1.027980e-02	ci right 1.086668e-02	k: 4968	n:470000
KS ci ratio: 2.589775e-01	ci left: 4.241900e-04	ci right 5.523115e-04	k: 228	n:470000
PIAS1   470000 perm   177 sec   (2657 perm/sec)   p_kst 4.851064e-04   p_cons 1.057021e-02   p_joint 4.851064e-04

Joint ci ratio: 2.556497e-01	ci left: 4.270467e-04	ci right 5.541093e-04	k: 234	n:480000
Cons ci ratio: 5.476702e-02	ci left: 1.027110e-02	ci right 1.085150e-02	k: 5068	n:480000
KS ci ratio: 2.556497e-01	ci left: 4.270467e-04	ci right 5.541093e-04	k: 234	n:480000
PIAS1   480000 perm   183 sec   (2629 perm/sec)   p_kst 4.875000e-04   p_cons 1.055833e-02   p_joint 4.875000e-04

Joint ci ratio: 2.529727e-01	ci left: 4.278852e-04	ci right 5.536540e-04	k: 239	n:490000
Cons ci ratio: 5.426682e-02	ci left: 1.025071e-02	ci right 1.082449e-02	k: 5162	n:490000
KS ci ratio: 2.529727e-01	ci left: 4.278852e-04	ci right 5.536540e-04	k: 239	n:490000
PIAS1   490000 perm   188 sec   (2602 perm/sec)   p_kst 4.877551e-04   p_cons 1.053469e-02   p_joint 4.877551e-04

Joint ci ratio: 2.508908e-01	ci left: 4.268224e-04	ci right 5.510850e-04	k: 243	n:500000
Cons ci ratio: 5.379043e-02	ci left: 1.022720e-02	ci right 1.079449e-02	k: 5254	n:500000
KS ci ratio: 2.508908e-01	ci left: 4.268224e-04	ci right 5.510850e-04	k: 243	n:500000
PIAS1   500000 perm   194 sec   (2576 perm/sec)   p_kst 4.860000e-04   p_cons 1.050800e-02   p_joint 4.860000e-04

Joint ci ratio: 2.478616e-01	ci left: 4.294829e-04	ci right 5.527778e-04	k: 249	n:510000
Cons ci ratio: 5.320581e-02	ci left: 1.025108e-02	ci right 1.081332e-02	k: 5370	n:510000
KS ci ratio: 2.478616e-01	ci left: 4.294829e-04	ci right 5.527778e-04	k: 249	n:510000
PIAS1   510000 perm   200 sec   (2550 perm/sec)   p_kst 4.882353e-04   p_cons 1.052941e-02   p_joint 4.882353e-04

Joint ci ratio: 2.473682e-01	ci left: 4.230272e-04	ci right 5.441899e-04	k: 250	n:520000
Cons ci ratio: 5.264470e-02	ci left: 1.027217e-02	ci right 1.082945e-02	k: 5485	n:520000
KS ci ratio: 2.473682e-01	ci left: 4.230272e-04	ci right 5.441899e-04	k: 250	n:520000
PIAS1   520000 perm   206 sec   (2525 perm/sec)   p_kst 4.807692e-04   p_cons 1.054808e-02   p_joint 4.807692e-04

Joint ci ratio: 2.459035e-01	ci left: 4.203560e-04	ci right 5.399318e-04	k: 253	n:530000
Cons ci ratio: 5.209628e-02	ci left: 1.029436e-02	ci right 1.084685e-02	k: 5601	n:530000
KS ci ratio: 2.459035e-01	ci left: 4.203560e-04	ci right 5.399318e-04	k: 253	n:530000
PIAS1   530000 perm   212 sec   (2500 perm/sec)   p_kst 4.773585e-04   p_cons 1.056792e-02   p_joint 4.773585e-04

Joint ci ratio: 2.449417e-01	ci left: 4.160475e-04	ci right 5.338642e-04	k: 255	n:540000
Cons ci ratio: 5.155097e-02	ci left: 1.032125e-02	ci right 1.086921e-02	k: 5720	n:540000
KS ci ratio: 2.449417e-01	ci left: 4.160475e-04	ci right 5.338642e-04	k: 255	n:540000
PIAS1   540000 perm   218 sec   (2475 perm/sec)   p_kst 4.722222e-04   p_cons 1.059259e-02   p_joint 4.722222e-04

Joint ci ratio: 2.435194e-01	ci left: 4.136037e-04	ci right 5.299454e-04	k: 258	n:550000
Cons ci ratio: 5.111097e-02	ci left: 1.031128e-02	ci right 1.085390e-02	k: 5819	n:550000
KS ci ratio: 2.435194e-01	ci left: 4.136037e-04	ci right 5.299454e-04	k: 258	n:550000
PIAS1   550000 perm   224 sec   (2451 perm/sec)   p_kst 4.690909e-04   p_cons 1.058000e-02   p_joint 4.690909e-04

Joint ci ratio: 2.412022e-01	ci left: 4.146043e-04	ci right 5.299518e-04	k: 263	n:560000
Cons ci ratio: 5.069503e-02	ci left: 1.029639e-02	ci right 1.083369e-02	k: 5915	n:560000
KS ci ratio: 2.412022e-01	ci left: 4.146043e-04	ci right 5.299518e-04	k: 263	n:560000
PIAS1   560000 perm   231 sec   (2427 perm/sec)   p_kst 4.696429e-04   p_cons 1.056250e-02   p_joint 4.696429e-04

Joint ci ratio: 2.389500e-01	ci left: 4.155748e-04	ci right 5.299530e-04	k: 268	n:570000
Cons ci ratio: 5.031446e-02	ci left: 1.027165e-02	ci right 1.080352e-02	k: 6005	n:570000
KS ci ratio: 2.389500e-01	ci left: 4.155748e-04	ci right 5.299530e-04	k: 268	n:570000
PIAS1   570000 perm   237 sec   (2406 perm/sec)   p_kst 4.701754e-04   p_cons 1.053509e-02   p_joint 4.701754e-04

Joint ci ratio: 2.363286e-01	ci left: 4.181388e-04	ci right 5.317754e-04	k: 274	n:580000
Cons ci ratio: 4.989273e-02	ci left: 1.026821e-02	ci right 1.079532e-02	k: 6107	n:580000
KS ci ratio: 2.363286e-01	ci left: 4.181388e-04	ci right 5.317754e-04	k: 274	n:580000
PIAS1   580000 perm   243 sec   (2385 perm/sec)   p_kst 4.724138e-04   p_cons 1.052931e-02   p_joint 4.724138e-04

Joint ci ratio: 2.346286e-01	ci left: 4.174313e-04	ci right 5.299412e-04	k: 278	n:590000
Cons ci ratio: 4.946533e-02	ci left: 1.027160e-02	ci right 1.079424e-02	k: 6213	n:590000
KS ci ratio: 2.346286e-01	ci left: 4.174313e-04	ci right 5.299412e-04	k: 278	n:590000
PIAS1   590000 perm   250 sec   (2365 perm/sec)   p_kst 4.711864e-04   p_cons 1.053051e-02   p_joint 4.711864e-04

Joint ci ratio: 2.317390e-01	ci left: 4.214594e-04	ci right 5.334557e-04	k: 285	n:600000
Cons ci ratio: 4.902130e-02	ci left: 1.028643e-02	ci right 1.080498e-02	k: 6326	n:600000
KS ci ratio: 2.317390e-01	ci left: 4.214594e-04	ci right 5.334557e-04	k: 285	n:600000
PIAS1   600000 perm   256 sec   (2342 perm/sec)   p_kst 4.750000e-04   p_cons 1.054333e-02   p_joint 4.750000e-04

Joint ci ratio: 2.297395e-01	ci left: 4.222732e-04	ci right 5.333802e-04	k: 290	n:610000
Cons ci ratio: 4.858139e-02	ci left: 1.030402e-02	ci right 1.081868e-02	k: 6441	n:610000
KS ci ratio: 2.297395e-01	ci left: 4.222732e-04	ci right 5.333802e-04	k: 290	n:610000
PIAS1   610000 perm   263 sec   (2323 perm/sec)   p_kst 4.754098e-04   p_cons 1.055902e-02   p_joint 4.754098e-04

Joint ci ratio: 2.285646e-01	ci left: 4.200233e-04	ci right 5.298933e-04	k: 293	n:620000
Cons ci ratio: 4.822378e-02	ci left: 1.029079e-02	ci right 1.080090e-02	k: 6537	n:620000
KS ci ratio: 2.285646e-01	ci left: 4.200233e-04	ci right 5.298933e-04	k: 293	n:620000
PIAS1   620000 perm   269 sec   (2303 perm/sec)   p_kst 4.725806e-04   p_cons 1.054355e-02   p_joint 4.725806e-04

Joint ci ratio: 2.266455e-01	ci left: 4.208403e-04	ci right 5.298705e-04	k: 298	n:630000
Cons ci ratio: 4.786666e-02	ci left: 1.028113e-02	ci right 1.078688e-02	k: 6635	n:630000
KS ci ratio: 2.266455e-01	ci left: 4.208403e-04	ci right 5.298705e-04	k: 298	n:630000
PIAS1   630000 perm   276 sec   (2282 perm/sec)   p_kst 4.730159e-04   p_cons 1.053175e-02   p_joint 4.730159e-04

Joint ci ratio: 2.251446e-01	ci left: 4.201610e-04	ci right 5.281944e-04	k: 302	n:640000
Cons ci ratio: 4.747107e-02	ci left: 1.029186e-02	ci right 1.079384e-02	k: 6746	n:640000
KS ci ratio: 2.251446e-01	ci left: 4.201610e-04	ci right 5.281944e-04	k: 302	n:640000
PIAS1   640000 perm   283 sec   (2263 perm/sec)   p_kst 4.718750e-04   p_cons 1.054062e-02   p_joint 4.718750e-04

Joint ci ratio: 2.233096e-01	ci left: 4.209573e-04	ci right 5.281920e-04	k: 307	n:650000
Cons ci ratio: 4.712682e-02	ci left: 1.028403e-02	ci right 1.078189e-02	k: 6845	n:650000
KS ci ratio: 2.233096e-01	ci left: 4.209573e-04	ci right 5.281920e-04	k: 307	n:650000
PIAS1   650000 perm   290 sec   (2244 perm/sec)   p_kst 4.723077e-04   p_cons 1.053077e-02   p_joint 4.723077e-04

Joint ci ratio: 2.215188e-01	ci left: 4.217329e-04	ci right 5.281861e-04	k: 312	n:660000
Cons ci ratio: 4.678314e-02	ci left: 1.027944e-02	ci right 1.077335e-02	k: 6946	n:660000
KS ci ratio: 2.215188e-01	ci left: 4.217329e-04	ci right 5.281861e-04	k: 312	n:660000
PIAS1   660000 perm   297 sec   (2225 perm/sec)   p_kst 4.727273e-04   p_cons 1.052424e-02   p_joint 4.727273e-04

Joint ci ratio: 2.201169e-01	ci left: 4.210783e-04	ci right 5.266026e-04	k: 316	n:670000
Cons ci ratio: 4.642358e-02	ci left: 1.028533e-02	ci right 1.077563e-02	k: 7054	n:670000
KS ci ratio: 2.201169e-01	ci left: 4.210783e-04	ci right 5.266026e-04	k: 316	n:670000
PIAS1   670000 perm   304 sec   (2206 perm/sec)   p_kst 4.716418e-04   p_cons 1.052836e-02   p_joint 4.716418e-04

Joint ci ratio: 2.197711e-01	ci left: 4.162754e-04	ci right 5.204101e-04	k: 317	n:680000
Cons ci ratio: 4.605594e-02	ci left: 1.029834e-02	ci right 1.078526e-02	k: 7167	n:680000
KS ci ratio: 2.197711e-01	ci left: 4.162754e-04	ci right 5.204101e-04	k: 317	n:680000
PIAS1   680000 perm   311 sec   (2188 perm/sec)   p_kst 4.661765e-04   p_cons 1.053971e-02   p_joint 4.661765e-04

Joint ci ratio: 2.190837e-01	ci left: 4.129816e-04	ci right 5.159256e-04	k: 319	n:690000
Cons ci ratio: 4.571594e-02	ci left: 1.030238e-02	ci right 1.078580e-02	k: 7274	n:690000
KS ci ratio: 2.190837e-01	ci left: 4.129816e-04	ci right 5.159256e-04	k: 319	n:690000
PIAS1   690000 perm   318 sec   (2167 perm/sec)   p_kst 4.623188e-04   p_cons 1.054203e-02   p_joint 4.623188e-04

Joint ci ratio: 2.187427e-01	ci left: 4.084320e-04	ci right 5.100622e-04	k: 320	n:700000
Cons ci ratio: 4.537404e-02	ci left: 1.031056e-02	ci right 1.079065e-02	k: 7384	n:700000
KS ci ratio: 2.187427e-01	ci left: 4.084320e-04	ci right 5.100622e-04	k: 320	n:700000
PIAS1   700000 perm   326 sec   (2150 perm/sec)   p_kst 4.571429e-04   p_cons 1.054857e-02   p_joint 4.571429e-04

Joint ci ratio: 2.167264e-01	ci left: 4.106694e-04	ci right 5.117890e-04	k: 326	n:710000
Cons ci ratio: 4.505489e-02	ci left: 1.031155e-02	ci right 1.078823e-02	k: 7489	n:710000
KS ci ratio: 2.167264e-01	ci left: 4.106694e-04	ci right 5.117890e-04	k: 326	n:710000
PIAS1   710000 perm   333 sec   (2133 perm/sec)   p_kst 4.591549e-04   p_cons 1.054789e-02   p_joint 4.591549e-04

Joint ci ratio: 2.141225e-01	ci left: 4.154774e-04	ci right 5.163903e-04	k: 334	n:720000
Cons ci ratio: 4.474238e-02	ci left: 1.031253e-02	ci right 1.078586e-02	k: 7594	n:720000
KS ci ratio: 2.141225e-01	ci left: 4.154774e-04	ci right 5.163903e-04	k: 334	n:720000
PIAS1   720000 perm   340 sec   (2116 perm/sec)   p_kst 4.638889e-04   p_cons 1.054722e-02   p_joint 4.638889e-04

Joint ci ratio: 2.119195e-01	ci left: 4.188635e-04	ci right 5.194162e-04	k: 341	n:730000
Cons ci ratio: 4.445380e-02	ci left: 1.030537e-02	ci right 1.077524e-02	k: 7693	n:730000
KS ci ratio: 2.119195e-01	ci left: 4.188635e-04	ci right 5.194162e-04	k: 341	n:730000
PIAS1   730000 perm   348 sec   (2099 perm/sec)   p_kst 4.671233e-04   p_cons 1.053836e-02   p_joint 4.671233e-04

Joint ci ratio: 2.103871e-01	ci left: 4.196027e-04	ci right 5.195106e-04	k: 346	n:740000
Cons ci ratio: 4.413639e-02	ci left: 1.031445e-02	ci right 1.078129e-02	k: 7804	n:740000
KS ci ratio: 2.103871e-01	ci left: 4.196027e-04	ci right 5.195106e-04	k: 346	n:740000
PIAS1   740000 perm   355 sec   (2082 perm/sec)   p_kst 4.675676e-04   p_cons 1.054595e-02   p_joint 4.675676e-04

Joint ci ratio: 2.088875e-01	ci left: 4.203247e-04	ci right 5.195999e-04	k: 351	n:750000
Cons ci ratio: 4.382569e-02	ci left: 1.032329e-02	ci right 1.078716e-02	k: 7915	n:750000
KS ci ratio: 2.088875e-01	ci left: 4.203247e-04	ci right 5.195999e-04	k: 351	n:750000
PIAS1   750000 perm   364 sec   (2063 perm/sec)   p_kst 4.680000e-04   p_cons 1.055333e-02   p_joint 4.680000e-04

Joint ci ratio: 2.071295e-01	ci left: 4.222777e-04	ci right 5.210684e-04	k: 357	n:760000
Cons ci ratio: 4.353517e-02	ci left: 1.032541e-02	ci right 1.078622e-02	k: 8021	n:760000
KS ci ratio: 2.071295e-01	ci left: 4.222777e-04	ci right 5.210684e-04	k: 357	n:760000
PIAS1   760000 perm   372 sec   (2042 perm/sec)   p_kst 4.697368e-04   p_cons 1.055395e-02   p_joint 4.697368e-04

Joint ci ratio: 2.048528e-01	ci left: 4.266474e-04	ci right 5.252259e-04	k: 365	n:770000
Cons ci ratio: 4.322885e-02	ci left: 1.033776e-02	ci right 1.079580e-02	k: 8135	n:770000
KS ci ratio: 2.048528e-01	ci left: 4.266474e-04	ci right 5.252259e-04	k: 365	n:770000
PIAS1   770000 perm   380 sec   (2026 perm/sec)   p_kst 4.740260e-04   p_cons 1.056494e-02   p_joint 4.740260e-04

Joint ci ratio: 2.042958e-01	ci left: 4.236102e-04	ci right 5.211876e-04	k: 367	n:780000
Cons ci ratio: 4.296050e-02	ci left: 1.033459e-02	ci right 1.078957e-02	k: 8237	n:780000
KS ci ratio: 2.042958e-01	ci left: 4.236102e-04	ci right 5.211876e-04	k: 367	n:780000
PIAS1   780000 perm   388 sec   (2009 perm/sec)   p_kst 4.705128e-04   p_cons 1.056026e-02   p_joint 4.705128e-04

Joint ci ratio: 2.029219e-01	ci left: 4.242545e-04	ci right 5.212416e-04	k: 372	n:790000
Cons ci ratio: 4.268932e-02	ci left: 1.033526e-02	ci right 1.078733e-02	k: 8342	n:790000
KS ci ratio: 2.029219e-01	ci left: 4.242545e-04	ci right 5.212416e-04	k: 372	n:790000
PIAS1   790000 perm   396 sec   (1995 perm/sec)   p_kst 4.708861e-04   p_cons 1.055949e-02   p_joint 4.708861e-04

Joint ci ratio: 2.029225e-01	ci left: 4.189512e-04	ci right 5.147263e-04	k: 372	n:800000
Cons ci ratio: 4.244353e-02	ci left: 1.032603e-02	ci right 1.077503e-02	k: 8439	n:800000
KS ci ratio: 2.029225e-01	ci left: 4.189512e-04	ci right 5.147263e-04	k: 372	n:800000
PIAS1   800000 perm   404 sec   (1980 perm/sec)   p_kst 4.650000e-04   p_cons 1.054875e-02   p_joint 4.650000e-04

Joint ci ratio: 2.018432e-01	ci left: 4.184670e-04	ci right 5.135598e-04	k: 376	n:810000
Cons ci ratio: 4.216701e-02	ci left: 1.033413e-02	ci right 1.078049e-02	k: 8550	n:810000
KS ci ratio: 2.018432e-01	ci left: 4.184670e-04	ci right 5.135598e-04	k: 376	n:810000
PIAS1   810000 perm   412 sec   (1966 perm/sec)   p_kst 4.641975e-04   p_cons 1.055556e-02   p_joint 4.641975e-04

Joint ci ratio: 1.999947e-01	ci left: 4.214709e-04	ci right 5.162623e-04	k: 383	n:820000
Cons ci ratio: 4.189826e-02	ci left: 1.034084e-02	ci right 1.078458e-02	k: 8660	n:820000
KS ci ratio: 1.999947e-01	ci left: 4.214709e-04	ci right 5.162623e-04	k: 383	n:820000
PIAS1   820000 perm   420 sec   (1952 perm/sec)   p_kst 4.670732e-04   p_cons 1.056098e-02   p_joint 4.670732e-04

Joint ci ratio: 1.984502e-01	ci left: 4.232614e-04	ci right 5.176313e-04	k: 389	n:830000
Cons ci ratio: 4.166101e-02	ci left: 1.033429e-02	ci right 1.077516e-02	k: 8759	n:830000
KS ci ratio: 1.984502e-01	ci left: 4.232614e-04	ci right 5.176313e-04	k: 389	n:830000
PIAS1   830000 perm   428 sec   (1939 perm/sec)   p_kst 4.686747e-04   p_cons 1.055301e-02   p_joint 4.686747e-04

Joint ci ratio: 1.979436e-01	ci left: 4.204853e-04	ci right 5.139680e-04	k: 391	n:840000
Cons ci ratio: 4.142065e-02	ci left: 1.033143e-02	ci right 1.076958e-02	k: 8861	n:840000
KS ci ratio: 1.979436e-01	ci left: 4.204853e-04	ci right 5.139680e-04	k: 391	n:840000
PIAS1   840000 perm   436 sec   (1925 perm/sec)   p_kst 4.654762e-04   p_cons 1.054881e-02   p_joint 4.654762e-04

Joint ci ratio: 1.966931e-01	ci left: 4.211302e-04	ci right 5.140939e-04	k: 396	n:850000
Cons ci ratio: 4.119601e-02	ci left: 1.032282e-02	ci right 1.075818e-02	k: 8958	n:850000
KS ci ratio: 1.966931e-01	ci left: 4.211302e-04	ci right 5.140939e-04	k: 396	n:850000
PIAS1   850000 perm   445 sec   (1910 perm/sec)   p_kst 4.658824e-04   p_cons 1.053882e-02   p_joint 4.658824e-04

Joint ci ratio: 1.952232e-01	ci left: 4.228678e-04	ci right 5.154346e-04	k: 402	n:860000
Cons ci ratio: 4.093162e-02	ci left: 1.033628e-02	ci right 1.076935e-02	k: 9074	n:860000
KS ci ratio: 1.952232e-01	ci left: 4.228678e-04	ci right 5.154346e-04	k: 402	n:860000
PIAS1   860000 perm   454 sec   (1896 perm/sec)   p_kst 4.674419e-04   p_cons 1.055116e-02   p_joint 4.674419e-04

Joint ci ratio: 1.942616e-01	ci left: 4.223808e-04	ci right 5.143317e-04	k: 406	n:870000
Cons ci ratio: 4.069015e-02	ci left: 1.034035e-02	ci right 1.077097e-02	k: 9182	n:870000
KS ci ratio: 1.942616e-01	ci left: 4.223808e-04	ci right 5.143317e-04	k: 406	n:870000
PIAS1   870000 perm   462 sec   (1883 perm/sec)   p_kst 4.666667e-04   p_cons 1.055402e-02   p_joint 4.666667e-04

Joint ci ratio: 1.928452e-01	ci left: 4.240688e-04	ci right 5.156352e-04	k: 412	n:880000
Cons ci ratio: 4.046171e-02	ci left: 1.033983e-02	ci right 1.076795e-02	k: 9286	n:880000
KS ci ratio: 1.928452e-01	ci left: 4.240688e-04	ci right 5.156352e-04	k: 412	n:880000
PIAS1   880000 perm   471 sec   (1870 perm/sec)   p_kst 4.681818e-04   p_cons 1.055227e-02   p_joint 4.681818e-04

Joint ci ratio: 1.916883e-01	ci left: 4.246516e-04	ci right 5.157296e-04	k: 417	n:890000
Cons ci ratio: 4.024574e-02	ci left: 1.033487e-02	ci right 1.076045e-02	k: 9386	n:890000
KS ci ratio: 1.916883e-01	ci left: 4.246516e-04	ci right 5.157296e-04	k: 417	n:890000
PIAS1   890000 perm   480 sec   (1856 perm/sec)   p_kst 4.685393e-04   p_cons 1.054607e-02   p_joint 4.685393e-04

Joint ci ratio: 1.910043e-01	ci left: 4.231068e-04	ci right 5.134921e-04	k: 420	n:900000
Cons ci ratio: 4.002893e-02	ci left: 1.033224e-02	ci right 1.075536e-02	k: 9488	n:900000
KS ci ratio: 1.910043e-01	ci left: 4.231068e-04	ci right 5.134921e-04	k: 420	n:900000
PIAS1   900000 perm   488 sec   (1843 perm/sec)   p_kst 4.666667e-04   p_cons 1.054222e-02   p_joint 4.666667e-04

Joint ci ratio: 1.905525e-01	ci left: 4.205501e-04	ci right 5.101520e-04	k: 422	n:910000
Cons ci ratio: 3.976533e-02	ci left: 1.035578e-02	ci right 1.077701e-02	k: 9614	n:910000
KS ci ratio: 1.905525e-01	ci left: 4.205501e-04	ci right 5.101520e-04	k: 422	n:910000
PIAS1   910000 perm   497 sec   (1830 perm/sec)   p_kst 4.637363e-04   p_cons 1.056484e-02   p_joint 4.637363e-04

Joint ci ratio: 1.905530e-01	ci left: 4.159788e-04	ci right 5.046070e-04	k: 422	n:920000
Cons ci ratio: 3.954793e-02	ci left: 1.035729e-02	ci right 1.077623e-02	k: 9720	n:920000
KS ci ratio: 1.905530e-01	ci left: 4.159788e-04	ci right 5.046070e-04	k: 422	n:920000
PIAS1   920000 perm   506 sec   (1818 perm/sec)   p_kst 4.586957e-04   p_cons 1.056522e-02   p_joint 4.586957e-04

Joint ci ratio: 1.894366e-01	ci left: 4.166265e-04	ci right 5.048129e-04	k: 427	n:930000
Cons ci ratio: 3.932394e-02	ci left: 1.036410e-02	ci right 1.078089e-02	k: 9831	n:930000
KS ci ratio: 1.894366e-01	ci left: 4.166265e-04	ci right 5.048129e-04	k: 427	n:930000
PIAS1   930000 perm   515 sec   (1806 perm/sec)   p_kst 4.591398e-04   p_cons 1.057097e-02   p_joint 4.591398e-04

Joint ci ratio: 1.866228e-01	ci left: 4.253734e-04	ci right 5.139223e-04	k: 440	n:940000
Cons ci ratio: 3.911962e-02	ci left: 1.036235e-02	ci right 1.077685e-02	k: 9934	n:940000
KS ci ratio: 1.866228e-01	ci left: 4.253734e-04	ci right 5.139223e-04	k: 440	n:940000
PIAS1   940000 perm   524 sec   (1794 perm/sec)   p_kst 4.680851e-04   p_cons 1.056809e-02   p_joint 4.680851e-04

Joint ci ratio: 1.859914e-01	ci left: 4.239063e-04	ci right 5.118177e-04	k: 443	n:950000
Cons ci ratio: 3.890279e-02	ci left: 1.036897e-02	ci right 1.078139e-02	k: 10045	n:950000
KS ci ratio: 1.859914e-01	ci left: 4.239063e-04	ci right 5.118177e-04	k: 443	n:950000
PIAS1   950000 perm   533 sec   (1781 perm/sec)   p_kst 4.663158e-04   p_cons 1.057368e-02   p_joint 4.663158e-04

Joint ci ratio: 1.851593e-01	ci left: 4.234637e-04	ci right 5.108463e-04	k: 447	n:960000
Cons ci ratio: 3.869145e-02	ci left: 1.037443e-02	ci right 1.078478e-02	k: 10155	n:960000
KS ci ratio: 1.851593e-01	ci left: 4.234637e-04	ci right 5.108463e-04	k: 447	n:960000
PIAS1   960000 perm   543 sec   (1768 perm/sec)   p_kst 4.656250e-04   p_cons 1.057813e-02   p_joint 4.656250e-04

Joint ci ratio: 1.839316e-01	ci left: 4.249980e-04	ci right 5.120508e-04	k: 453	n:970000
Cons ci ratio: 3.848920e-02	ci left: 1.037673e-02	ci right 1.078497e-02	k: 10262	n:970000
KS ci ratio: 1.839316e-01	ci left: 4.249980e-04	ci right 5.120508e-04	k: 453	n:970000
PIAS1   970000 perm   553 sec   (1753 perm/sec)   p_kst 4.670103e-04   p_cons 1.057938e-02   p_joint 4.670103e-04

Joint ci ratio: 1.829270e-01	ci left: 4.255291e-04	ci right 5.121618e-04	k: 458	n:980000
Cons ci ratio: 3.830503e-02	ci left: 1.037089e-02	ci right 1.077691e-02	k: 10361	n:980000
KS ci ratio: 1.829270e-01	ci left: 4.255291e-04	ci right 5.121618e-04	k: 458	n:980000
PIAS1   980000 perm   564 sec   (1738 perm/sec)   p_kst 4.673469e-04   p_cons 1.057245e-02   p_joint 4.673469e-04

Joint ci ratio: 1.817429e-01	ci left: 4.270148e-04	ci right 5.133253e-04	k: 464	n:990000
Cons ci ratio: 3.812348e-02	ci left: 1.036518e-02	ci right 1.076901e-02	k: 10460	n:990000
KS ci ratio: 1.817429e-01	ci left: 4.270148e-04	ci right 5.133253e-04	k: 464	n:990000
PIAS1   990000 perm   574 sec   (1726 perm/sec)   p_kst 4.686869e-04   p_cons 1.056566e-02   p_joint 4.686869e-04

Joint ci ratio: 1.805814e-01	ci left: 4.284726e-04	ci right 5.144638e-04	k: 470	n:1000000
Cons ci ratio: 3.792634e-02	ci left: 1.036949e-02	ci right 1.077135e-02	k: 10569	n:1000000
KS ci ratio: 1.805814e-01	ci left: 4.284726e-04	ci right 5.144638e-04	k: 470	n:1000000
PIAS1   1000000 perm   583 sec   (1714 perm/sec)   p_kst 4.700000e-04   p_cons 1.056900e-02   p_joint 4.700000e-04

Joint ci ratio: 1.792541e-01	ci left: 4.308489e-04	ci right 5.166126e-04	k: 477	n:1010000
Cons ci ratio: 3.771438e-02	ci left: 1.038353e-02	ci right 1.078364e-02	k: 10688	n:1010000
KS ci ratio: 1.792541e-01	ci left: 4.308489e-04	ci right 5.166126e-04	k: 477	n:1010000
PIAS1   1010000 perm   595 sec   (1697 perm/sec)   p_kst 4.722772e-04   p_cons 1.058218e-02   p_joint 4.722772e-04

Joint ci ratio: 1.779556e-01	ci left: 4.331809e-04	ci right 5.187169e-04	k: 484	n:1020000
Cons ci ratio: 3.751120e-02	ci left: 1.039439e-02	ci right 1.079271e-02	k: 10804	n:1020000
KS ci ratio: 1.779556e-01	ci left: 4.331809e-04	ci right 5.187169e-04	k: 484	n:1020000
PIAS1   1020000 perm   605 sec   (1686 perm/sec)   p_kst 4.745098e-04   p_cons 1.059216e-02   p_joint 4.745098e-04

Joint ci ratio: 1.774079e-01	ci left: 4.317583e-04	ci right 5.167229e-04	k: 487	n:1030000
Cons ci ratio: 3.733373e-02	ci left: 1.039254e-02	ci right 1.078886e-02	k: 10907	n:1030000
KS ci ratio: 1.774079e-01	ci left: 4.317583e-04	ci right 5.167229e-04	k: 487	n:1030000
PIAS1   1030000 perm   615 sec   (1675 perm/sec)   p_kst 4.728155e-04   p_cons 1.058932e-02   p_joint 4.728155e-04

Joint ci ratio: 1.766854e-01	ci left: 4.312825e-04	ci right 5.157708e-04	k: 491	n:1040000
Cons ci ratio: 3.714001e-02	ci left: 1.040120e-02	ci right 1.079576e-02	k: 11021	n:1040000
KS ci ratio: 1.766854e-01	ci left: 4.312825e-04	ci right 5.157708e-04	k: 491	n:1040000
PIAS1   1040000 perm   625 sec   (1665 perm/sec)   p_kst 4.721154e-04   p_cons 1.059712e-02   p_joint 4.721154e-04

Joint ci ratio: 1.761493e-01	ci left: 4.299060e-04	ci right 5.138419e-04	k: 494	n:1050000
Cons ci ratio: 3.694090e-02	ci left: 1.041443e-02	ci right 1.080732e-02	k: 11140	n:1050000
KS ci ratio: 1.761493e-01	ci left: 4.299060e-04	ci right 5.138419e-04	k: 494	n:1050000
PIAS1   1050000 perm   635 sec   (1653 perm/sec)   p_kst 4.704762e-04   p_cons 1.060952e-02   p_joint 4.704762e-04

Joint ci ratio: 1.750912e-01	ci left: 4.312619e-04	ci right 5.149033e-04	k: 500	n:1060000
Cons ci ratio: 3.673506e-02	ci left: 1.043302e-02	ci right 1.082438e-02	k: 11265	n:1060000
KS ci ratio: 1.750912e-01	ci left: 4.312619e-04	ci right 5.149033e-04	k: 500	n:1060000
PIAS1   1060000 perm   645 sec   (1642 perm/sec)   p_kst 4.716981e-04   p_cons 1.062736e-02   p_joint 4.716981e-04

Joint ci ratio: 1.742240e-01	ci left: 4.317000e-04	ci right 5.149681e-04	k: 505	n:1070000
Cons ci ratio: 3.658134e-02	ci left: 1.042349e-02	ci right 1.081281e-02	k: 11360	n:1070000
KS ci ratio: 1.742240e-01	ci left: 4.317000e-04	ci right 5.149681e-04	k: 505	n:1070000
PIAS1   1070000 perm   656 sec   (1631 perm/sec)   p_kst 4.719626e-04   p_cons 1.061682e-02   p_joint 4.719626e-04

Joint ci ratio: 1.735394e-01	ci left: 4.312453e-04	ci right 5.140646e-04	k: 509	n:1080000
Cons ci ratio: 3.640867e-02	ci left: 1.042606e-02	ci right 1.081361e-02	k: 11468	n:1080000
KS ci ratio: 1.735394e-01	ci left: 4.312453e-04	ci right 5.140646e-04	k: 509	n:1080000
PIAS1   1080000 perm   666 sec   (1621 perm/sec)   p_kst 4.712963e-04   p_cons 1.061852e-02   p_joint 4.712963e-04

Joint ci ratio: 1.730314e-01	ci left: 4.299218e-04	ci right 5.122200e-04	k: 512	n:1090000
Cons ci ratio: 3.621313e-02	ci left: 1.044314e-02	ci right 1.082919e-02	k: 11592	n:1090000
KS ci ratio: 1.730314e-01	ci left: 4.299218e-04	ci right 5.122200e-04	k: 512	n:1090000
PIAS1   1090000 perm   677 sec   (1611 perm/sec)   p_kst 4.697248e-04   p_cons 1.063486e-02   p_joint 4.697248e-04

Joint ci ratio: 1.721943e-01	ci left: 4.303626e-04	ci right 5.123051e-04	k: 517	n:1100000
Cons ci ratio: 3.604403e-02	ci left: 1.044640e-02	ci right 1.083073e-02	k: 11701	n:1100000
KS ci ratio: 1.721943e-01	ci left: 4.303626e-04	ci right 5.123051e-04	k: 517	n:1100000
PIAS1   1100000 perm   687 sec   (1601 perm/sec)   p_kst 4.700000e-04   p_cons 1.063727e-02   p_joint 4.700000e-04

Joint ci ratio: 1.716979e-01	ci left: 4.290718e-04	ci right 5.105086e-04	k: 520	n:1110000
Cons ci ratio: 3.587729e-02	ci left: 1.044960e-02	ci right 1.083224e-02	k: 11810	n:1110000
KS ci ratio: 1.716979e-01	ci left: 4.290718e-04	ci right 5.105086e-04	k: 520	n:1110000
PIAS1   1110000 perm   698 sec   (1591 perm/sec)   p_kst 4.684685e-04   p_cons 1.063964e-02   p_joint 4.684685e-04

Joint ci ratio: 1.712059e-01	ci left: 4.278044e-04	ci right 5.087440e-04	k: 523	n:1120000
Cons ci ratio: 3.574012e-02	ci left: 1.043682e-02	ci right 1.081750e-02	k: 11901	n:1120000
KS ci ratio: 1.712059e-01	ci left: 4.278044e-04	ci right 5.087440e-04	k: 523	n:1120000
PIAS1   1120000 perm   708 sec   (1582 perm/sec)   p_kst 4.669643e-04   p_cons 1.062589e-02   p_joint 4.669643e-04

Joint ci ratio: 1.707180e-01	ci left: 4.265598e-04	ci right 5.070102e-04	k: 526	n:1130000
Cons ci ratio: 3.557005e-02	ci left: 1.044445e-02	ci right 1.082355e-02	k: 12015	n:1130000
KS ci ratio: 1.707180e-01	ci left: 4.265598e-04	ci right 5.070102e-04	k: 526	n:1130000
PIAS1   1130000 perm   718 sec   (1573 perm/sec)   p_kst 4.654867e-04   p_cons 1.063274e-02   p_joint 4.654867e-04

Joint ci ratio: 1.699138e-01	ci left: 4.270170e-04	ci right 5.071355e-04	k: 531	n:1140000
Cons ci ratio: 3.540977e-02	ci left: 1.044760e-02	ci right 1.082507e-02	k: 12124	n:1140000
KS ci ratio: 1.699138e-01	ci left: 4.270170e-04	ci right 5.071355e-04	k: 531	n:1140000
PIAS1   1140000 perm   729 sec   (1564 perm/sec)   p_kst 4.657895e-04   p_cons 1.063509e-02   p_joint 4.657895e-04

Joint ci ratio: 1.692787e-01	ci left: 4.266344e-04	ci right 5.063514e-04	k: 535	n:1150000
Cons ci ratio: 3.527787e-02	ci left: 1.043518e-02	ci right 1.081077e-02	k: 12215	n:1150000
KS ci ratio: 1.692787e-01	ci left: 4.266344e-04	ci right 5.063514e-04	k: 535	n:1150000
PIAS1   1150000 perm   740 sec   (1555 perm/sec)   p_kst 4.652174e-04   p_cons 1.062174e-02   p_joint 4.652174e-04

Joint ci ratio: 1.675675e-01	ci left: 4.320397e-04	ci right 5.118682e-04	k: 546	n:1160000
Cons ci ratio: 3.510853e-02	ci left: 1.044605e-02	ci right 1.082019e-02	k: 12333	n:1160000
KS ci ratio: 1.675675e-01	ci left: 4.320397e-04	ci right 5.118682e-04	k: 546	n:1160000
PIAS1   1160000 perm   751 sec   (1544 perm/sec)   p_kst 4.706897e-04   p_cons 1.063190e-02   p_joint 4.706897e-04

Joint ci ratio: 1.671100e-01	ci left: 4.308038e-04	ci right 5.101647e-04	k: 549	n:1170000
Cons ci ratio: 3.498565e-02	ci left: 1.043047e-02	ci right 1.080273e-02	k: 12420	n:1170000
KS ci ratio: 1.671100e-01	ci left: 4.308038e-04	ci right 5.101647e-04	k: 549	n:1170000
PIAS1   1170000 perm   763 sec   (1534 perm/sec)   p_kst 4.692308e-04   p_cons 1.061538e-02   p_joint 4.692308e-04

Joint ci ratio: 1.668072e-01	ci left: 4.287769e-04	ci right 5.076070e-04	k: 551	n:1180000
Cons ci ratio: 3.485983e-02	ci left: 1.041768e-02	ci right 1.078812e-02	k: 12510	n:1180000
KS ci ratio: 1.668072e-01	ci left: 4.287769e-04	ci right 5.076070e-04	k: 551	n:1180000
PIAS1   1180000 perm   774 sec   (1525 perm/sec)   p_kst 4.669492e-04   p_cons 1.060169e-02   p_joint 4.669492e-04

Joint ci ratio: 1.659079e-01	ci left: 4.300059e-04	ci right 5.085931e-04	k: 557	n:1190000
Cons ci ratio: 3.472839e-02	ci left: 1.040928e-02	ci right 1.077799e-02	k: 12605	n:1190000
KS ci ratio: 1.659079e-01	ci left: 4.300059e-04	ci right 5.085931e-04	k: 557	n:1190000
PIAS1   1190000 perm   785 sec   (1515 perm/sec)   p_kst 4.680672e-04   p_cons 1.059244e-02   p_joint 4.680672e-04

Joint ci ratio: 1.647310e-01	ci left: 4.328134e-04	ci right 5.112970e-04	k: 565	n:1200000
Cons ci ratio: 3.458055e-02	ci left: 1.041175e-02	ci right 1.077895e-02	k: 12713	n:1200000
KS ci ratio: 1.647310e-01	ci left: 4.328134e-04	ci right 5.112970e-04	k: 565	n:1200000
PIAS1   1200000 perm   797 sec   (1506 perm/sec)   p_kst 4.708333e-04   p_cons 1.059417e-02   p_joint 4.708333e-04

Joint ci ratio: 1.642962e-01	ci left: 4.316137e-04	ci right 5.096528e-04	k: 568	n:1210000
Cons ci ratio: 3.446991e-02	ci left: 1.039289e-02	ci right 1.075822e-02	k: 12795	n:1210000
KS ci ratio: 1.642962e-01	ci left: 4.316137e-04	ci right 5.096528e-04	k: 568	n:1210000
PIAS1   1210000 perm   808 sec   (1497 perm/sec)   p_kst 4.694215e-04   p_cons 1.057438e-02   p_joint 4.694215e-04

Joint ci ratio: 1.634367e-01	ci left: 4.327923e-04	ci right 5.105948e-04	k: 574	n:1220000
Cons ci ratio: 3.434820e-02	ci left: 1.038165e-02	ci right 1.074527e-02	k: 12886	n:1220000
KS ci ratio: 1.634367e-01	ci left: 4.327923e-04	ci right 5.105948e-04	k: 574	n:1220000
PIAS1   1220000 perm   819 sec   (1489 perm/sec)   p_kst 4.704918e-04   p_cons 1.056230e-02   p_joint 4.704918e-04

Joint ci ratio: 1.630121e-01	ci left: 4.316130e-04	ci right 5.089822e-04	k: 577	n:1230000
Cons ci ratio: 3.423177e-02	ci left: 1.036817e-02	ci right 1.073007e-02	k: 12974	n:1230000
KS ci ratio: 1.630121e-01	ci left: 4.316130e-04	ci right 5.089822e-04	k: 577	n:1230000
PIAS1   1230000 perm   831 sec   (1480 perm/sec)   p_kst 4.691057e-04   p_cons 1.054797e-02   p_joint 4.691057e-04

Joint ci ratio: 1.621725e-01	ci left: 4.327741e-04	ci right 5.099129e-04	k: 583	n:1240000
Cons ci ratio: 3.410465e-02	ci left: 1.036212e-02	ci right 1.072243e-02	k: 13071	n:1240000
KS ci ratio: 1.621725e-01	ci left: 4.327741e-04	ci right 5.099129e-04	k: 583	n:1240000
PIAS1   1240000 perm   843 sec   (1472 perm/sec)   p_kst 4.701613e-04   p_cons 1.054113e-02   p_joint 4.701613e-04

Joint ci ratio: 1.614827e-01	ci left: 4.331499e-04	ci right 5.099955e-04	k: 588	n:1250000
Cons ci ratio: 3.394378e-02	ci left: 1.037758e-02	ci right 1.073670e-02	k: 13195	n:1250000
KS ci ratio: 1.614827e-01	ci left: 4.331499e-04	ci right 5.099955e-04	k: 588	n:1250000
PIAS1   1250000 perm   854 sec   (1463 perm/sec)   p_kst 4.704000e-04   p_cons 1.055600e-02   p_joint 4.704000e-04

Joint ci ratio: 1.605314e-01	ci left: 4.350440e-04	ci right 5.117270e-04	k: 595	n:1260000
Cons ci ratio: 3.380954e-02	ci left: 1.037784e-02	ci right 1.073552e-02	k: 13300	n:1260000
KS ci ratio: 1.605314e-01	ci left: 4.350440e-04	ci right 5.117270e-04	k: 595	n:1260000
PIAS1   1260000 perm   866 sec   (1455 perm/sec)   p_kst 4.722222e-04   p_cons 1.055556e-02   p_joint 4.722222e-04

Joint ci ratio: 1.601290e-01	ci left: 4.338858e-04	ci right 5.101546e-04	k: 598	n:1270000
Cons ci ratio: 3.366039e-02	ci left: 1.038826e-02	ci right 1.074469e-02	k: 13418	n:1270000
KS ci ratio: 1.601290e-01	ci left: 4.338858e-04	ci right 5.101546e-04	k: 598	n:1270000
PIAS1   1270000 perm   878 sec   (1447 perm/sec)   p_kst 4.708661e-04   p_cons 1.056535e-02   p_joint 4.708661e-04

Joint ci ratio: 1.592014e-01	ci left: 4.357464e-04	ci right 5.118561e-04	k: 605	n:1280000
Cons ci ratio: 3.353700e-02	ci left: 1.038379e-02	ci right 1.073874e-02	k: 13517	n:1280000
KS ci ratio: 1.592014e-01	ci left: 4.357464e-04	ci right 5.118561e-04	k: 605	n:1280000
PIAS1   1280000 perm   890 sec   (1439 perm/sec)   p_kst 4.726562e-04   p_cons 1.056016e-02   p_joint 4.726562e-04

Joint ci ratio: 1.573931e-01	ci left: 4.427915e-04	ci right 5.191703e-04	k: 619	n:1290000
Cons ci ratio: 3.341495e-02	ci left: 1.037940e-02	ci right 1.073288e-02	k: 13616	n:1290000
KS ci ratio: 1.573931e-01	ci left: 4.427915e-04	ci right 5.191703e-04	k: 619	n:1290000
PIAS1   1290000 perm   902 sec   (1431 perm/sec)   p_kst 4.798450e-04   p_cons 1.055504e-02   p_joint 4.798450e-04

Joint ci ratio: 1.568879e-01	ci left: 4.423413e-04	ci right 5.183745e-04	k: 623	n:1300000
Cons ci ratio: 3.328074e-02	ci left: 1.038347e-02	ci right 1.073564e-02	k: 13726	n:1300000
KS ci ratio: 1.568879e-01	ci left: 4.423413e-04	ci right 5.183745e-04	k: 623	n:1300000
PIAS1   1300000 perm   914 sec   (1423 perm/sec)   p_kst 4.792308e-04   p_cons 1.055846e-02   p_joint 4.792308e-04

Joint ci ratio: 1.563875e-01	ci left: 4.418984e-04	ci right 5.175905e-04	k: 627	n:1310000
Cons ci ratio: 3.313604e-02	ci left: 1.039505e-02	ci right 1.074605e-02	k: 13846	n:1310000
KS ci ratio: 1.563875e-01	ci left: 4.418984e-04	ci right 5.175905e-04	k: 627	n:1310000
PIAS1   1310000 perm   926 sec   (1415 perm/sec)   p_kst 4.786260e-04   p_cons 1.056947e-02   p_joint 4.786260e-04

Joint ci ratio: 1.552785e-01	ci left: 4.451030e-04	ci right 5.207531e-04	k: 636	n:1320000
Cons ci ratio: 3.300514e-02	ci left: 1.039894e-02	ci right 1.074866e-02	k: 13956	n:1320000
KS ci ratio: 1.552785e-01	ci left: 4.451030e-04	ci right 5.207531e-04	k: 636	n:1320000
PIAS1   1320000 perm   938 sec   (1407 perm/sec)   p_kst 4.818182e-04   p_cons 1.057273e-02   p_joint 4.818182e-04

Joint ci ratio: 1.546727e-01	ci left: 4.453700e-04	ci right 5.207427e-04	k: 641	n:1330000
Cons ci ratio: 3.289116e-02	ci left: 1.039309e-02	ci right 1.074138e-02	k: 14053	n:1330000
KS ci ratio: 1.546727e-01	ci left: 4.453700e-04	ci right 5.207427e-04	k: 641	n:1330000
PIAS1   1330000 perm   951 sec   (1399 perm/sec)   p_kst 4.819549e-04   p_cons 1.056617e-02   p_joint 4.819549e-04

Joint ci ratio: 1.544325e-01	ci left: 4.434811e-04	ci right 5.184069e-04	k: 643	n:1340000
Cons ci ratio: 3.278420e-02	ci left: 1.038362e-02	ci right 1.073044e-02	k: 14145	n:1340000
KS ci ratio: 1.544325e-01	ci left: 4.434811e-04	ci right 5.184069e-04	k: 643	n:1340000
PIAS1   1340000 perm   963 sec   (1391 perm/sec)   p_kst 4.798507e-04   p_cons 1.055597e-02   p_joint 4.798507e-04

Joint ci ratio: 1.540741e-01	ci left: 4.423325e-04	ci right 5.168748e-04	k: 646	n:1350000
Cons ci ratio: 3.267711e-02	ci left: 1.037503e-02	ci right 1.072041e-02	k: 14238	n:1350000
KS ci ratio: 1.540741e-01	ci left: 4.423325e-04	ci right 5.168748e-04	k: 646	n:1350000
PIAS1   1350000 perm   976 sec   (1384 perm/sec)   p_kst 4.785185e-04   p_cons 1.054667e-02   p_joint 4.785185e-04

Joint ci ratio: 1.533646e-01	ci left: 4.433222e-04	ci right 5.176555e-04	k: 652	n:1360000
Cons ci ratio: 3.255730e-02	ci left: 1.037532e-02	ci right 1.071942e-02	k: 14343	n:1360000
KS ci ratio: 1.533646e-01	ci left: 4.433222e-04	ci right 5.176555e-04	k: 652	n:1360000
PIAS1   1360000 perm   988 sec   (1376 perm/sec)   p_kst 4.794118e-04   p_cons 1.054632e-02   p_joint 4.794118e-04

Joint ci ratio: 1.526647e-01	ci left: 4.442981e-04	ci right 5.184241e-04	k: 658	n:1370000
Cons ci ratio: 3.244447e-02	ci left: 1.037198e-02	ci right 1.071476e-02	k: 14443	n:1370000
KS ci ratio: 1.526647e-01	ci left: 4.442981e-04	ci right 5.184241e-04	k: 658	n:1370000
PIAS1   1370000 perm   1001 sec   (1369 perm/sec)   p_kst 4.802920e-04   p_cons 1.054234e-02   p_joint 4.802920e-04

Joint ci ratio: 1.516326e-01	ci left: 4.473521e-04	ci right 5.214372e-04	k: 667	n:1380000
Cons ci ratio: 3.233505e-02	ci left: 1.036726e-02	ci right 1.070871e-02	k: 14541	n:1380000
KS ci ratio: 1.516326e-01	ci left: 4.473521e-04	ci right 5.214372e-04	k: 667	n:1380000
PIAS1   1380000 perm   1013 sec   (1362 perm/sec)   p_kst 4.833333e-04   p_cons 1.053696e-02   p_joint 4.833333e-04

Joint ci ratio: 1.516329e-01	ci left: 4.441337e-04	ci right 5.176859e-04	k: 667	n:1390000
Cons ci ratio: 3.223229e-02	ci left: 1.035904e-02	ci right 1.069912e-02	k: 14634	n:1390000
KS ci ratio: 1.516329e-01	ci left: 4.441337e-04	ci right 5.176859e-04	k: 667	n:1390000
PIAS1   1390000 perm   1026 sec   (1355 perm/sec)   p_kst 4.798561e-04   p_cons 1.052806e-02   p_joint 4.798561e-04

Joint ci ratio: 1.512936e-01	ci left: 4.430229e-04	ci right 5.162122e-04	k: 670	n:1400000
Cons ci ratio: 3.210848e-02	ci left: 1.036512e-02	ci right 1.070406e-02	k: 14747	n:1400000
KS ci ratio: 1.512936e-01	ci left: 4.430229e-04	ci right 5.162122e-04	k: 670	n:1400000
PIAS1   1400000 perm   1039 sec   (1348 perm/sec)   p_kst 4.785714e-04   p_cons 1.053357e-02   p_joint 4.785714e-04

Joint ci ratio: 1.508447e-01	ci left: 4.426106e-04	ci right 5.154952e-04	k: 674	n:1410000
Cons ci ratio: 3.199261e-02	ci left: 1.036688e-02	ci right 1.070464e-02	k: 14854	n:1410000
KS ci ratio: 1.508447e-01	ci left: 4.426106e-04	ci right 5.154952e-04	k: 674	n:1410000
PIAS1   1410000 perm   1052 sec   (1341 perm/sec)   p_kst 4.780142e-04   p_cons 1.053475e-02   p_joint 4.780142e-04

Joint ci ratio: 1.506219e-01	ci left: 4.408489e-04	ci right 5.133265e-04	k: 676	n:1420000
Cons ci ratio: 3.188769e-02	ci left: 1.036234e-02	ci right 1.069882e-02	k: 14952	n:1420000
KS ci ratio: 1.506219e-01	ci left: 4.408489e-04	ci right 5.133265e-04	k: 676	n:1420000
PIAS1   1420000 perm   1065 sec   (1333 perm/sec)   p_kst 4.760563e-04   p_cons 1.052958e-02   p_joint 4.760563e-04

Joint ci ratio: 1.498490e-01	ci left: 4.424771e-04	ci right 5.148157e-04	k: 683	n:1430000
Cons ci ratio: 3.179339e-02	ci left: 1.035162e-02	ci right 1.068673e-02	k: 15041	n:1430000
KS ci ratio: 1.498490e-01	ci left: 4.424771e-04	ci right 5.148157e-04	k: 683	n:1430000
PIAS1   1430000 perm   1079 sec   (1325 perm/sec)   p_kst 4.776224e-04   p_cons 1.051818e-02   p_joint 4.776224e-04

Joint ci ratio: 1.495216e-01	ci left: 4.414097e-04	ci right 5.134019e-04	k: 686	n:1440000
Cons ci ratio: 3.167878e-02	ci left: 1.035482e-02	ci right 1.068881e-02	k: 15150	n:1440000
KS ci ratio: 1.495216e-01	ci left: 4.414097e-04	ci right 5.134019e-04	k: 686	n:1440000
PIAS1   1440000 perm   1093 sec   (1317 perm/sec)   p_kst 4.763889e-04   p_cons 1.052083e-02   p_joint 4.763889e-04

Joint ci ratio: 1.488728e-01	ci left: 4.423489e-04	ci right 5.141535e-04	k: 692	n:1450000
Cons ci ratio: 3.155182e-02	ci left: 1.036689e-02	ci right 1.069990e-02	k: 15272	n:1450000
KS ci ratio: 1.488728e-01	ci left: 4.423489e-04	ci right 5.141535e-04	k: 692	n:1450000
PIAS1   1450000 perm   1107 sec   (1310 perm/sec)   p_kst 4.772414e-04   p_cons 1.053241e-02   p_joint 4.772414e-04

Joint ci ratio: 1.480208e-01	ci left: 4.445951e-04	ci right 5.163147e-04	k: 700	n:1460000
Cons ci ratio: 3.143462e-02	ci left: 1.037335e-02	ci right 1.070531e-02	k: 15386	n:1460000
KS ci ratio: 1.480208e-01	ci left: 4.445951e-04	ci right 5.163147e-04	k: 700	n:1460000
PIAS1   1460000 perm   1120 sec   (1303 perm/sec)   p_kst 4.794521e-04   p_cons 1.053836e-02   p_joint 4.794521e-04

Joint ci ratio: 1.474957e-01	ci left: 4.448463e-04	ci right 5.163294e-04	k: 705	n:1470000
Cons ci ratio: 3.134019e-02	ci left: 1.036555e-02	ci right 1.069625e-02	k: 15479	n:1470000
KS ci ratio: 1.474957e-01	ci left: 4.448463e-04	ci right 5.163294e-04	k: 705	n:1470000
PIAS1   1470000 perm   1134 sec   (1297 perm/sec)   p_kst 4.795918e-04   p_cons 1.052993e-02   p_joint 4.795918e-04

Joint ci ratio: 1.469761e-01	ci left: 4.450945e-04	ci right 5.163434e-04	k: 710	n:1480000
Cons ci ratio: 3.121219e-02	ci left: 1.038065e-02	ci right 1.071046e-02	k: 15606	n:1480000
KS ci ratio: 1.469761e-01	ci left: 4.450945e-04	ci right 5.163434e-04	k: 710	n:1480000
PIAS1   1480000 perm   1147 sec   (1290 perm/sec)   p_kst 4.797297e-04   p_cons 1.054459e-02   p_joint 4.797297e-04

Joint ci ratio: 1.468731e-01	ci left: 4.427537e-04	ci right 5.135739e-04	k: 711	n:1490000
Cons ci ratio: 3.110872e-02	ci left: 1.038024e-02	ci right 1.070892e-02	k: 15710	n:1490000
KS ci ratio: 1.468731e-01	ci left: 4.427537e-04	ci right 5.135739e-04	k: 711	n:1490000
PIAS1   1490000 perm   1161 sec   (1283 perm/sec)   p_kst 4.771812e-04   p_cons 1.054362e-02   p_joint 4.771812e-04

Joint ci ratio: 1.466673e-01	ci left: 4.410864e-04	ci right 5.115323e-04	k: 713	n:1500000
Cons ci ratio: 3.100529e-02	ci left: 1.038049e-02	ci right 1.070807e-02	k: 15815	n:1500000
KS ci ratio: 1.466673e-01	ci left: 4.410864e-04	ci right 5.115323e-04	k: 713	n:1500000
PIAS1   1500000 perm   1175 sec   (1277 perm/sec)   p_kst 4.753333e-04   p_cons 1.054333e-02   p_joint 4.753333e-04

Joint ci ratio: 1.457514e-01	ci left: 4.439075e-04	ci right 5.143228e-04	k: 722	n:1510000
Cons ci ratio: 3.091074e-02	ci left: 1.037549e-02	ci right 1.070189e-02	k: 15912	n:1510000
KS ci ratio: 1.457514e-01	ci left: 4.439075e-04	ci right 5.143228e-04	k: 722	n:1510000
PIAS1   1510000 perm   1188 sec   (1271 perm/sec)   p_kst 4.781457e-04   p_cons 1.053775e-02   p_joint 4.781457e-04

Joint ci ratio: 1.450508e-01	ci left: 4.454248e-04	ci right 5.157117e-04	k: 729	n:1520000
Cons ci ratio: 3.080829e-02	ci left: 1.037643e-02	ci right 1.070176e-02	k: 16018	n:1520000
KS ci ratio: 1.450508e-01	ci left: 4.454248e-04	ci right 5.157117e-04	k: 729	n:1520000
PIAS1   1520000 perm   1202 sec   (1265 perm/sec)   p_kst 4.796053e-04   p_cons 1.053816e-02   p_joint 4.796053e-04

Joint ci ratio: 1.447538e-01	ci left: 4.444032e-04	ci right 5.143729e-04	k: 732	n:1530000
Cons ci ratio: 3.071841e-02	ci left: 1.036957e-02	ci right 1.069372e-02	k: 16112	n:1530000
KS ci ratio: 1.447538e-01	ci left: 4.444032e-04	ci right 5.143729e-04	k: 732	n:1530000
PIAS1   1530000 perm   1216 sec   (1258 perm/sec)   p_kst 4.784314e-04   p_cons 1.053072e-02   p_joint 4.784314e-04

Joint ci ratio: 1.443605e-01	ci left: 4.440210e-04	ci right 5.137241e-04	k: 736	n:1540000
Cons ci ratio: 3.061404e-02	ci left: 1.037312e-02	ci right 1.069626e-02	k: 16222	n:1540000
KS ci ratio: 1.443605e-01	ci left: 4.440210e-04	ci right 5.137241e-04	k: 736	n:1540000
PIAS1   1540000 perm   1230 sec   (1252 perm/sec)   p_kst 4.779221e-04   p_cons 1.053377e-02   p_joint 4.779221e-04

Joint ci ratio: 1.440676e-01	ci left: 4.430219e-04	ci right 5.124151e-04	k: 739	n:1550000
Cons ci ratio: 3.050413e-02	ci left: 1.038110e-02	ci right 1.070331e-02	k: 16339	n:1550000
KS ci ratio: 1.440676e-01	ci left: 4.430219e-04	ci right 5.124151e-04	k: 739	n:1550000
PIAS1   1550000 perm   1244 sec   (1246 perm/sec)   p_kst 4.767742e-04   p_cons 1.054129e-02   p_joint 4.767742e-04

Joint ci ratio: 1.436799e-01	ci left: 4.426539e-04	ci right 5.117867e-04	k: 743	n:1560000
Cons ci ratio: 3.041875e-02	ci left: 1.037308e-02	ci right 1.069412e-02	k: 16431	n:1560000
KS ci ratio: 1.436799e-01	ci left: 4.426539e-04	ci right 5.117867e-04	k: 743	n:1560000
PIAS1   1560000 perm   1258 sec   (1240 perm/sec)   p_kst 4.762821e-04   p_cons 1.053269e-02   p_joint 4.762821e-04

Joint ci ratio: 1.431995e-01	ci left: 4.429048e-04	ci right 5.118258e-04	k: 748	n:1570000
Cons ci ratio: 3.033779e-02	ci left: 1.036264e-02	ci right 1.068248e-02	k: 16519	n:1570000
KS ci ratio: 1.431995e-01	ci left: 4.429048e-04	ci right 5.118258e-04	k: 748	n:1570000
PIAS1   1570000 perm   1272 sec   (1235 perm/sec)   p_kst 4.764331e-04   p_cons 1.052166e-02   p_joint 4.764331e-04

Joint ci ratio: 1.427239e-01	ci left: 4.431530e-04	ci right 5.118641e-04	k: 753	n:1580000
Cons ci ratio: 3.023357e-02	ci left: 1.036866e-02	ci right 1.068757e-02	k: 16633	n:1580000
KS ci ratio: 1.427239e-01	ci left: 4.431530e-04	ci right 5.118641e-04	k: 753	n:1580000
PIAS1   1580000 perm   1286 sec   (1229 perm/sec)   p_kst 4.765823e-04   p_cons 1.052722e-02   p_joint 4.765823e-04

Joint ci ratio: 1.425351e-01	ci left: 4.415788e-04	ci right 5.099476e-04	k: 755	n:1590000
Cons ci ratio: 3.012132e-02	ci left: 1.038085e-02	ci right 1.069893e-02	k: 16757	n:1590000
KS ci ratio: 1.425351e-01	ci left: 4.415788e-04	ci right 5.099476e-04	k: 755	n:1590000
PIAS1   1590000 perm   1300 sec   (1223 perm/sec)   p_kst 4.748428e-04   p_cons 1.053899e-02   p_joint 4.748428e-04

Joint ci ratio: 1.422532e-01	ci left: 4.406271e-04	ci right 5.087022e-04	k: 758	n:1600000
Cons ci ratio: 3.003010e-02	ci left: 1.037924e-02	ci right 1.069629e-02	k: 16859	n:1600000
KS ci ratio: 1.422532e-01	ci left: 4.406271e-04	ci right 5.087022e-04	k: 758	n:1600000
PIAS1   1600000 perm   1316 sec   (1216 perm/sec)   p_kst 4.737500e-04   p_cons 1.053687e-02   p_joint 4.737500e-04

Joint ci ratio: 1.414170e-01	ci left: 4.432821e-04	ci right 5.113308e-04	k: 767	n:1610000
Cons ci ratio: 2.993436e-02	ci left: 1.038135e-02	ci right 1.069744e-02	k: 16967	n:1610000
KS ci ratio: 1.414170e-01	ci left: 4.432821e-04	ci right 5.113308e-04	k: 767	n:1610000
PIAS1   1610000 perm   1334 sec   (1207 perm/sec)   p_kst 4.763975e-04   p_cons 1.053851e-02   p_joint 4.763975e-04

Joint ci ratio: 1.409589e-01	ci left: 4.435232e-04	ci right 5.113698e-04	k: 772	n:1620000
Cons ci ratio: 2.982981e-02	ci left: 1.039017e-02	ci right 1.070541e-02	k: 17086	n:1620000
KS ci ratio: 1.409589e-01	ci left: 4.435232e-04	ci right 5.113698e-04	k: 772	n:1620000
PIAS1   1620000 perm   1350 sec   (1200 perm/sec)   p_kst 4.765432e-04   p_cons 1.054691e-02   p_joint 4.765432e-04

Joint ci ratio: 1.404150e-01	ci left: 4.443536e-04	ci right 5.120430e-04	k: 778	n:1630000
Cons ci ratio: 2.974033e-02	ci left: 1.038915e-02	ci right 1.070339e-02	k: 17189	n:1630000
KS ci ratio: 1.404150e-01	ci left: 4.443536e-04	ci right 5.120430e-04	k: 778	n:1630000
PIAS1   1630000 perm   1364 sec   (1195 perm/sec)   p_kst 4.773006e-04   p_cons 1.054540e-02   p_joint 4.773006e-04

Joint ci ratio: 1.399665e-01	ci left: 4.445860e-04	ci right 5.120764e-04	k: 783	n:1640000
Cons ci ratio: 2.963607e-02	ci left: 1.039903e-02	ci right 1.071245e-02	k: 17310	n:1640000
KS ci ratio: 1.399665e-01	ci left: 4.445860e-04	ci right 5.120764e-04	k: 783	n:1640000
PIAS1   1640000 perm   1379 sec   (1189 perm/sec)   p_kst 4.774390e-04   p_cons 1.055488e-02   p_joint 4.774390e-04

Joint ci ratio: 1.395223e-01	ci left: 4.448159e-04	ci right 5.121091e-04	k: 788	n:1650000
Cons ci ratio: 2.953974e-02	ci left: 1.040399e-02	ci right 1.071652e-02	k: 17423	n:1650000
KS ci ratio: 1.395223e-01	ci left: 4.448159e-04	ci right 5.121091e-04	k: 788	n:1650000
PIAS1   1650000 perm   1393 sec   (1184 perm/sec)   p_kst 4.775758e-04   p_cons 1.055939e-02   p_joint 4.775758e-04

Joint ci ratio: 1.390823e-01	ci left: 4.450433e-04	ci right 5.121411e-04	k: 793	n:1660000
Cons ci ratio: 2.945030e-02	ci left: 1.040470e-02	ci right 1.071629e-02	k: 17529	n:1660000
KS ci ratio: 1.390823e-01	ci left: 4.450433e-04	ci right 5.121411e-04	k: 793	n:1660000
PIAS1   1660000 perm   1409 sec   (1178 perm/sec)   p_kst 4.777108e-04   p_cons 1.055964e-02   p_joint 4.777108e-04

Joint ci ratio: 1.389076e-01	ci left: 4.435343e-04	ci right 5.103136e-04	k: 795	n:1670000
Cons ci ratio: 2.936923e-02	ci left: 1.040005e-02	ci right 1.071063e-02	k: 17626	n:1670000
KS ci ratio: 1.389076e-01	ci left: 4.435343e-04	ci right 5.103136e-04	k: 795	n:1670000
PIAS1   1670000 perm   1424 sec   (1173 perm/sec)   p_kst 4.760479e-04   p_cons 1.055449e-02   p_joint 4.760479e-04

Joint ci ratio: 1.386466e-01	ci left: 4.426180e-04	ci right 5.091237e-04	k: 798	n:1680000
Cons ci ratio: 2.925465e-02	ci left: 1.041969e-02	ci right 1.072962e-02	k: 17764	n:1680000
KS ci ratio: 1.386466e-01	ci left: 4.426180e-04	ci right 5.091237e-04	k: 798	n:1680000
PIAS1   1680000 perm   1439 sec   (1168 perm/sec)   p_kst 4.750000e-04   p_cons 1.057381e-02   p_joint 4.750000e-04

Joint ci ratio: 1.381289e-01	ci left: 4.434263e-04	ci right 5.097843e-04	k: 804	n:1690000
Cons ci ratio: 2.916858e-02	ci left: 1.041971e-02	ci right 1.072872e-02	k: 17869	n:1690000
KS ci ratio: 1.381289e-01	ci left: 4.434263e-04	ci right 5.097843e-04	k: 804	n:1690000
PIAS1   1690000 perm   1453 sec   (1163 perm/sec)   p_kst 4.757396e-04   p_cons 1.057337e-02   p_joint 4.757396e-04

Joint ci ratio: 1.377019e-01	ci left: 4.436576e-04	ci right 5.098282e-04	k: 809	n:1700000
Cons ci ratio: 2.908082e-02	ci left: 1.042148e-02	ci right 1.072960e-02	k: 17977	n:1700000
KS ci ratio: 1.377019e-01	ci left: 4.436576e-04	ci right 5.098282e-04	k: 809	n:1700000
PIAS1   1700000 perm   1468 sec   (1158 perm/sec)   p_kst 4.758824e-04   p_cons 1.057471e-02   p_joint 4.758824e-04

Joint ci ratio: 1.373632e-01	ci left: 4.433218e-04	ci right 5.092663e-04	k: 813	n:1710000
Cons ci ratio: 2.898736e-02	ci left: 1.042788e-02	ci right 1.073518e-02	k: 18093	n:1710000
KS ci ratio: 1.373632e-01	ci left: 4.433218e-04	ci right 5.092663e-04	k: 813	n:1710000
PIAS1   1710000 perm   1483 sec   (1153 perm/sec)   p_kst 4.754386e-04   p_cons 1.058070e-02   p_joint 4.754386e-04

Joint ci ratio: 1.371108e-01	ci left: 4.424286e-04	ci right 5.081095e-04	k: 816	n:1720000
Cons ci ratio: 2.891005e-02	ci left: 1.042324e-02	ci right 1.072957e-02	k: 18190	n:1720000
KS ci ratio: 1.371108e-01	ci left: 4.424286e-04	ci right 5.081095e-04	k: 816	n:1720000
PIAS1   1720000 perm   1499 sec   (1148 perm/sec)   p_kst 4.744186e-04   p_cons 1.057558e-02   p_joint 4.744186e-04

Joint ci ratio: 1.361146e-01	ci left: 4.465707e-04	ci right 5.123457e-04	k: 828	n:1730000
Cons ci ratio: 2.884053e-02	ci left: 1.041349e-02	ci right 1.071879e-02	k: 18278	n:1730000
KS ci ratio: 1.361146e-01	ci left: 4.465707e-04	ci right 5.123457e-04	k: 828	n:1730000
PIAS1   1730000 perm   1514 sec   (1143 perm/sec)   p_kst 4.786127e-04   p_cons 1.056532e-02   p_joint 4.786127e-04

Joint ci ratio: 1.355434e-01	ci left: 4.478905e-04	ci right 5.135608e-04	k: 835	n:1740000
Cons ci ratio: 2.874462e-02	ci left: 1.042326e-02	ci right 1.072780e-02	k: 18400	n:1740000
KS ci ratio: 1.355434e-01	ci left: 4.478905e-04	ci right 5.135608e-04	k: 835	n:1740000
PIAS1   1740000 perm   1530 sec   (1137 perm/sec)   p_kst 4.798851e-04   p_cons 1.057471e-02   p_joint 4.798851e-04

Joint ci ratio: 1.350596e-01	ci left: 4.486436e-04	ci right 5.141707e-04	k: 841	n:1750000
Cons ci ratio: 2.866766e-02	ci left: 1.041986e-02	ci right 1.072348e-02	k: 18499	n:1750000
KS ci ratio: 1.350596e-01	ci left: 4.486436e-04	ci right 5.141707e-04	k: 841	n:1750000
PIAS1   1750000 perm   1545 sec   (1132 perm/sec)   p_kst 4.805714e-04   p_cons 1.057086e-02   p_joint 4.805714e-04

Joint ci ratio: 1.348996e-01	ci left: 4.471925e-04	ci right 5.124240e-04	k: 843	n:1760000
Cons ci ratio: 2.858977e-02	ci left: 1.041763e-02	ci right 1.072035e-02	k: 18600	n:1760000
KS ci ratio: 1.348996e-01	ci left: 4.471925e-04	ci right 5.124240e-04	k: 843	n:1760000
PIAS1   1760000 perm   1561 sec   (1127 perm/sec)   p_kst 4.789773e-04   p_cons 1.056818e-02   p_joint 4.789773e-04

Joint ci ratio: 1.344226e-01	ci left: 4.479416e-04	ci right 5.130329e-04	k: 849	n:1770000
Cons ci ratio: 2.851173e-02	ci left: 1.041599e-02	ci right 1.071782e-02	k: 18702	n:1770000
KS ci ratio: 1.344226e-01	ci left: 4.479416e-04	ci right 5.130329e-04	k: 849	n:1770000
PIAS1   1770000 perm   1577 sec   (1122 perm/sec)   p_kst 4.796610e-04   p_cons 1.056610e-02   p_joint 4.796610e-04

Joint ci ratio: 1.341074e-01	ci left: 4.475968e-04	ci right 5.124734e-04	k: 853	n:1780000
Cons ci ratio: 2.842898e-02	ci left: 1.041827e-02	ci right 1.071928e-02	k: 18811	n:1780000
KS ci ratio: 1.341074e-01	ci left: 4.475968e-04	ci right 5.124734e-04	k: 853	n:1780000
PIAS1   1780000 perm   1593 sec   (1117 perm/sec)   p_kst 4.792135e-04   p_cons 1.056798e-02   p_joint 4.792135e-04

Joint ci ratio: 1.335611e-01	ci left: 4.488760e-04	ci right 5.136518e-04	k: 860	n:1790000
Cons ci ratio: 2.834468e-02	ci left: 1.042220e-02	ci right 1.072241e-02	k: 18923	n:1790000
KS ci ratio: 1.335611e-01	ci left: 4.488760e-04	ci right 5.136518e-04	k: 860	n:1790000
PIAS1   1790000 perm   1609 sec   (1112 perm/sec)   p_kst 4.804469e-04   p_cons 1.057151e-02   p_joint 4.804469e-04

Joint ci ratio: 1.330981e-01	ci left: 4.496044e-04	ci right 5.142426e-04	k: 866	n:1800000
Cons ci ratio: 2.825437e-02	ci left: 1.043104e-02	ci right 1.073053e-02	k: 19044	n:1800000
KS ci ratio: 1.330981e-01	ci left: 4.496044e-04	ci right 5.142426e-04	k: 866	n:1800000
PIAS1   1800000 perm   1625 sec   (1108 perm/sec)   p_kst 4.811111e-04   p_cons 1.058000e-02   p_joint 4.811111e-04

Joint ci ratio: 1.327921e-01	ci left: 4.492568e-04	ci right 5.136849e-04	k: 870	n:1810000
Cons ci ratio: 2.816790e-02	ci left: 1.043760e-02	ci right 1.073635e-02	k: 19161	n:1810000
KS ci ratio: 1.327921e-01	ci left: 4.492568e-04	ci right 5.136849e-04	k: 870	n:1810000
PIAS1   1810000 perm   1641 sec   (1103 perm/sec)   p_kst 4.806630e-04   p_cons 1.058619e-02   p_joint 4.806630e-04

Joint ci ratio: 1.327161e-01	ci left: 4.473195e-04	ci right 5.114302e-04	k: 871	n:1820000
Cons ci ratio: 2.809178e-02	ci left: 1.043699e-02	ci right 1.073490e-02	k: 19265	n:1820000
KS ci ratio: 1.327161e-01	ci left: 4.473195e-04	ci right 5.114302e-04	k: 871	n:1820000
PIAS1   1820000 perm   1657 sec   (1098 perm/sec)   p_kst 4.785714e-04   p_cons 1.058516e-02   p_joint 4.785714e-04

Joint ci ratio: 1.324128e-01	ci left: 4.469885e-04	ci right 5.108938e-04	k: 875	n:1830000
Cons ci ratio: 2.802432e-02	ci left: 1.043042e-02	ci right 1.072742e-02	k: 19358	n:1830000
KS ci ratio: 1.324128e-01	ci left: 4.469885e-04	ci right 5.108938e-04	k: 875	n:1830000
PIAS1   1830000 perm   1674 sec   (1093 perm/sec)   p_kst 4.781421e-04   p_cons 1.057814e-02   p_joint 4.781421e-04

Joint ci ratio: 1.321115e-01	ci left: 4.466612e-04	ci right 5.103630e-04	k: 879	n:1840000
Cons ci ratio: 2.795662e-02	ci left: 1.042446e-02	ci right 1.072056e-02	k: 19452	n:1840000
KS ci ratio: 1.321115e-01	ci left: 4.466612e-04	ci right 5.103630e-04	k: 879	n:1840000
PIAS1   1840000 perm   1690 sec   (1089 perm/sec)   p_kst 4.777174e-04   p_cons 1.057174e-02   p_joint 4.777174e-04

Joint ci ratio: 1.319618e-01	ci left: 4.452921e-04	ci right 5.087211e-04	k: 881	n:1850000
Cons ci ratio: 2.789013e-02	ci left: 1.041803e-02	ci right 1.071323e-02	k: 19545	n:1850000
KS ci ratio: 1.319618e-01	ci left: 4.452921e-04	ci right 5.087211e-04	k: 881	n:1850000
PIAS1   1850000 perm   1706 sec   (1084 perm/sec)   p_kst 4.762162e-04   p_cons 1.056486e-02   p_joint 4.762162e-04

Joint ci ratio: 1.312934e-01	ci left: 4.475775e-04	ci right 5.109839e-04	k: 890	n:1860000
Cons ci ratio: 2.780909e-02	ci left: 1.042289e-02	ci right 1.071735e-02	k: 19659	n:1860000
KS ci ratio: 1.312934e-01	ci left: 4.475775e-04	ci right 5.109839e-04	k: 890	n:1860000
PIAS1   1860000 perm   1722 sec   (1080 perm/sec)   p_kst 4.784946e-04   p_cons 1.056935e-02   p_joint 4.784946e-04

Joint ci ratio: 1.309998e-01	ci left: 4.472529e-04	ci right 5.104606e-04	k: 894	n:1870000
Cons ci ratio: 2.773868e-02	ci left: 1.042025e-02	ci right 1.071389e-02	k: 19759	n:1870000
KS ci ratio: 1.309998e-01	ci left: 4.472529e-04	ci right 5.104606e-04	k: 894	n:1870000
PIAS1   1870000 perm   1739 sec   (1075 perm/sec)   p_kst 4.780749e-04   p_cons 1.056631e-02   p_joint 4.780749e-04

Joint ci ratio: 1.307808e-01	ci left: 4.464174e-04	ci right 5.093933e-04	k: 897	n:1880000
Cons ci ratio: 2.766035e-02	ci left: 1.042399e-02	ci right 1.071688e-02	k: 19871	n:1880000
KS ci ratio: 1.307808e-01	ci left: 4.464174e-04	ci right 5.093933e-04	k: 897	n:1880000
PIAS1   1880000 perm   1756 sec   (1071 perm/sec)   p_kst 4.771277e-04   p_cons 1.056968e-02   p_joint 4.771277e-04

Joint ci ratio: 1.305630e-01	ci left: 4.455908e-04	ci right 5.083373e-04	k: 900	n:1890000
Cons ci ratio: 2.758687e-02	ci left: 1.042453e-02	ci right 1.071665e-02	k: 19977	n:1890000
KS ci ratio: 1.305630e-01	ci left: 4.455908e-04	ci right 5.083373e-04	k: 900	n:1890000
PIAS1   1890000 perm   1773 sec   (1066 perm/sec)   p_kst 4.761905e-04   p_cons 1.056984e-02   p_joint 4.761905e-04

Joint ci ratio: 1.302741e-01	ci left: 4.452821e-04	ci right 5.078357e-04	k: 904	n:1900000
Cons ci ratio: 2.750290e-02	ci left: 1.043343e-02	ci right 1.072490e-02	k: 20099	n:1900000
KS ci ratio: 1.302741e-01	ci left: 4.452821e-04	ci right 5.078357e-04	k: 904	n:1900000
PIAS1   1900000 perm   1789 sec   (1062 perm/sec)   p_kst 4.757895e-04   p_cons 1.057842e-02   p_joint 4.757895e-04

Joint ci ratio: 1.297731e-01	ci left: 4.464965e-04	ci right 5.089610e-04	k: 911	n:1910000
Cons ci ratio: 2.744371e-02	ci left: 1.042405e-02	ci right 1.071461e-02	k: 20186	n:1910000
KS ci ratio: 1.297731e-01	ci left: 4.464965e-04	ci right 5.089610e-04	k: 911	n:1910000
PIAS1   1910000 perm   1806 sec   (1057 perm/sec)   p_kst 4.769634e-04   p_cons 1.056859e-02   p_joint 4.769634e-04

Joint ci ratio: 1.296312e-01	ci left: 4.451789e-04	ci right 5.073856e-04	k: 913	n:1920000
Cons ci ratio: 2.737876e-02	ci left: 1.041941e-02	ci right 1.070915e-02	k: 20282	n:1920000
KS ci ratio: 1.296312e-01	ci left: 4.451789e-04	ci right 5.073856e-04	k: 913	n:1920000
PIAS1   1920000 perm   1824 sec   (1053 perm/sec)   p_kst 4.755208e-04   p_cons 1.056354e-02   p_joint 4.755208e-04

Joint ci ratio: 1.293485e-01	ci left: 4.448777e-04	ci right 5.068963e-04	k: 917	n:1930000
Cons ci ratio: 2.731088e-02	ci left: 1.041740e-02	ci right 1.070635e-02	k: 20383	n:1930000
KS ci ratio: 1.293485e-01	ci left: 4.448777e-04	ci right 5.068963e-04	k: 917	n:1930000
PIAS1   1930000 perm   1841 sec   (1048 perm/sec)   p_kst 4.751295e-04   p_cons 1.056114e-02   p_joint 4.751295e-04

Joint ci ratio: 1.289976e-01	ci left: 4.450785e-04	ci right 5.069440e-04	k: 922	n:1940000
Cons ci ratio: 2.724686e-02	ci left: 1.041285e-02	ci right 1.070099e-02	k: 20479	n:1940000
KS ci ratio: 1.289976e-01	ci left: 4.450785e-04	ci right 5.069440e-04	k: 922	n:1940000
PIAS1   1940000 perm   1858 sec   (1044 perm/sec)   p_kst 4.752577e-04   p_cons 1.055619e-02   p_joint 4.752577e-04

Joint ci ratio: 1.285804e-01	ci left: 4.457739e-04	ci right 5.075203e-04	k: 928	n:1950000
Cons ci ratio: 2.717728e-02	ci left: 1.041293e-02	ci right 1.070032e-02	k: 20584	n:1950000
KS ci ratio: 1.285804e-01	ci left: 4.457739e-04	ci right 5.075203e-04	k: 928	n:1950000
PIAS1   1950000 perm   1875 sec   (1040 perm/sec)   p_kst 4.758974e-04   p_cons 1.055590e-02   p_joint 4.758974e-04

Joint ci ratio: 1.281671e-01	ci left: 4.464624e-04	ci right 5.080903e-04	k: 934	n:1960000
Cons ci ratio: 2.710890e-02	ci left: 1.041250e-02	ci right 1.069915e-02	k: 20688	n:1960000
KS ci ratio: 1.281671e-01	ci left: 4.464624e-04	ci right 5.080903e-04	k: 934	n:1960000
PIAS1   1960000 perm   1892 sec   (1036 perm/sec)   p_kst 4.765306e-04   p_cons 1.055510e-02   p_joint 4.765306e-04

Joint ci ratio: 1.278258e-01	ci left: 4.466529e-04	ci right 5.081305e-04	k: 939	n:1970000
Cons ci ratio: 2.704761e-02	ci left: 1.040704e-02	ci right 1.069288e-02	k: 20782	n:1970000
KS ci ratio: 1.278258e-01	ci left: 4.466529e-04	ci right 5.081305e-04	k: 939	n:1970000
PIAS1   1970000 perm   1909 sec   (1032 perm/sec)   p_kst 4.766497e-04   p_cons 1.054924e-02   p_joint 4.766497e-04

Joint ci ratio: 1.273524e-01	ci left: 4.478196e-04	ci right 5.092123e-04	k: 946	n:1980000
Cons ci ratio: 2.697758e-02	ci left: 1.040865e-02	ci right 1.069379e-02	k: 20890	n:1980000
KS ci ratio: 1.273524e-01	ci left: 4.478196e-04	ci right 5.092123e-04	k: 946	n:1980000
PIAS1   1980000 perm   1926 sec   (1028 perm/sec)   p_kst 4.777778e-04   p_cons 1.055051e-02   p_joint 4.777778e-04

Joint ci ratio: 1.271512e-01	ci left: 4.470288e-04	ci right 5.082089e-04	k: 949	n:1990000
Cons ci ratio: 2.691393e-02	ci left: 1.040576e-02	ci right 1.069014e-02	k: 20989	n:1990000
KS ci ratio: 1.271512e-01	ci left: 4.470288e-04	ci right 5.082089e-04	k: 949	n:1990000
PIAS1   1990000 perm   1944 sec   (1024 perm/sec)   p_kst 4.768844e-04   p_cons 1.054724e-02   p_joint 4.768844e-04

Joint ci ratio: 1.268179e-01	ci left: 4.472143e-04	ci right 5.082473e-04	k: 954	n:2000000
Cons ci ratio: 2.685781e-02	ci left: 1.039744e-02	ci right 1.068098e-02	k: 21077	n:2000000
KS ci ratio: 1.268179e-01	ci left: 4.472143e-04	ci right 5.082473e-04	k: 954	n:2000000
PIAS1   2000000 perm   1961 sec   (1020 perm/sec)   p_kst 4.770000e-04   p_cons 1.053850e-02   p_joint 4.770000e-04

Joint ci ratio: 1.262244e-01	ci left: 4.493253e-04	ci right 5.103379e-04	k: 963	n:2010000
Cons ci ratio: 2.679628e-02	ci left: 1.039364e-02	ci right 1.067643e-02	k: 21174	n:2010000
KS ci ratio: 1.262244e-01	ci left: 4.493253e-04	ci right 5.103379e-04	k: 963	n:2010000
PIAS1   2010000 perm   1978 sec   (1016 perm/sec)   p_kst 4.791045e-04   p_cons 1.053433e-02   p_joint 4.791045e-04

Joint ci ratio: 1.260285e-01	ci left: 4.485392e-04	ci right 5.093435e-04	k: 966	n:2020000
Cons ci ratio: 2.672755e-02	ci left: 1.039579e-02	ci right 1.067789e-02	k: 21283	n:2020000
KS ci ratio: 1.260285e-01	ci left: 4.485392e-04	ci right 5.093435e-04	k: 966	n:2020000
PIAS1   2020000 perm   1996 sec   (1012 perm/sec)   p_kst 4.782178e-04   p_cons 1.053614e-02   p_joint 4.782178e-04

Joint ci ratio: 1.256393e-01	ci left: 4.491922e-04	ci right 5.098830e-04	k: 972	n:2030000
Cons ci ratio: 2.665809e-02	ci left: 1.039889e-02	ci right 1.068034e-02	k: 21394	n:2030000
KS ci ratio: 1.256393e-01	ci left: 4.491922e-04	ci right 5.098830e-04	k: 972	n:2030000
PIAS1   2030000 perm   2013 sec   (1008 perm/sec)   p_kst 4.788177e-04   p_cons 1.053892e-02   p_joint 4.788177e-04

Joint ci ratio: 1.253177e-01	ci left: 4.493644e-04	ci right 5.099115e-04	k: 977	n:2040000
Cons ci ratio: 2.660105e-02	ci left: 1.039272e-02	ci right 1.067338e-02	k: 21486	n:2040000
KS ci ratio: 1.253177e-01	ci left: 4.493644e-04	ci right 5.099115e-04	k: 977	n:2040000
PIAS1   2040000 perm   2030 sec   (1005 perm/sec)   p_kst 4.789216e-04   p_cons 1.053235e-02   p_joint 4.789216e-04

Joint ci ratio: 1.246817e-01	ci left: 4.518979e-04	ci right 5.124546e-04	k: 987	n:2050000
Cons ci ratio: 2.653878e-02	ci left: 1.039096e-02	ci right 1.067091e-02	k: 21587	n:2050000
KS ci ratio: 1.246817e-01	ci left: 4.518979e-04	ci right 5.124546e-04	k: 987	n:2050000
PIAS1   2050000 perm   2048 sec   (1001 perm/sec)   p_kst 4.814634e-04   p_cons 1.053024e-02   p_joint 4.814634e-04

Joint ci ratio: 1.243048e-01	ci left: 4.525262e-04	ci right 5.129702e-04	k: 993	n:2060000
Cons ci ratio: 2.647324e-02	ci left: 1.039212e-02	ci right 1.067140e-02	k: 21694	n:2060000
KS ci ratio: 1.243048e-01	ci left: 4.525262e-04	ci right 5.129702e-04	k: 993	n:2060000
PIAS1   2060000 perm   2066 sec   (997 perm/sec)   p_kst 4.820388e-04   p_cons 1.053107e-02   p_joint 4.820388e-04

Joint ci ratio: 1.238694e-01	ci left: 4.536167e-04	ci right 5.139786e-04	k: 1000	n:2070000
Cons ci ratio: 2.641370e-02	ci left: 1.038894e-02	ci right 1.066750e-02	k: 21792	n:2070000
KS ci ratio: 1.238694e-01	ci left: 4.536167e-04	ci right 5.139786e-04	k: 1000	n:2070000
PIAS1   2070000 perm   2085 sec   (993 perm/sec)   p_kst 4.830918e-04   p_cons 1.052754e-02   p_joint 4.830918e-04

Joint ci ratio: 1.236226e-01	ci left: 4.532994e-04	ci right 5.134901e-04	k: 1004	n:2080000
Cons ci ratio: 2.634483e-02	ci left: 1.039344e-02	ci right 1.067138e-02	k: 21906	n:2080000
KS ci ratio: 1.236226e-01	ci left: 4.532994e-04	ci right 5.134901e-04	k: 1004	n:2080000
PIAS1   2080000 perm   2103 sec   (989 perm/sec)   p_kst 4.826923e-04   p_cons 1.053173e-02   p_joint 4.826923e-04

Joint ci ratio: 1.231943e-01	ci left: 4.543764e-04	ci right 5.144858e-04	k: 1011	n:2090000
Cons ci ratio: 2.626384e-02	ci left: 1.040788e-02	ci right 1.068534e-02	k: 22041	n:2090000
KS ci ratio: 1.231943e-01	ci left: 4.543764e-04	ci right 5.144858e-04	k: 1011	n:2090000
PIAS1   2090000 perm   2121 sec   (985 perm/sec)   p_kst 4.837321e-04   p_cons 1.054593e-02   p_joint 4.837321e-04

Joint ci ratio: 1.230728e-01	ci left: 4.531358e-04	ci right 5.130176e-04	k: 1013	n:2100000
Cons ci ratio: 2.620450e-02	ci left: 1.040563e-02	ci right 1.068239e-02	k: 22141	n:2100000
KS ci ratio: 1.230728e-01	ci left: 4.531358e-04	ci right 5.130176e-04	k: 1013	n:2100000
PIAS1   2100000 perm   2139 sec   (982 perm/sec)   p_kst 4.823810e-04   p_cons 1.054333e-02   p_joint 4.823810e-04

Joint ci ratio: 1.227705e-01	ci left: 4.532850e-04	ci right 5.130288e-04	k: 1018	n:2110000
Cons ci ratio: 2.614675e-02	ci left: 1.040245e-02	ci right 1.067851e-02	k: 22239	n:2110000
KS ci ratio: 1.227705e-01	ci left: 4.532850e-04	ci right 5.130288e-04	k: 1018	n:2110000
PIAS1   2110000 perm   2157 sec   (978 perm/sec)   p_kst 4.824645e-04   p_cons 1.053981e-02   p_joint 4.824645e-04

Joint ci ratio: 1.222913e-01	ci left: 4.548048e-04	ci right 5.144980e-04	k: 1026	n:2120000
Cons ci ratio: 2.608229e-02	ci left: 1.040493e-02	ci right 1.068037e-02	k: 22349	n:2120000
KS ci ratio: 1.222913e-01	ci left: 4.548048e-04	ci right 5.144980e-04	k: 1026	n:2120000
PIAS1   2120000 perm   2176 sec   (974 perm/sec)   p_kst 4.839623e-04   p_cons 1.054198e-02   p_joint 4.839623e-04

Joint ci ratio: 1.218177e-01	ci left: 4.563108e-04	ci right 5.159530e-04	k: 1034	n:2130000
Cons ci ratio: 2.602534e-02	ci left: 1.040179e-02	ci right 1.067653e-02	k: 22447	n:2130000
KS ci ratio: 1.218177e-01	ci left: 4.563108e-04	ci right 5.159530e-04	k: 1034	n:2130000
PIAS1   2130000 perm   2195 sec   (970 perm/sec)   p_kst 4.854460e-04   p_cons 1.053850e-02   p_joint 4.854460e-04

Joint ci ratio: 1.214661e-01	ci left: 4.568970e-04	ci right 5.164310e-04	k: 1040	n:2140000
Cons ci ratio: 2.597459e-02	ci left: 1.039404e-02	ci right 1.066803e-02	k: 22535	n:2140000
KS ci ratio: 1.214661e-01	ci left: 4.568970e-04	ci right 5.164310e-04	k: 1040	n:2140000
PIAS1   2140000 perm   2214 sec   (967 perm/sec)   p_kst 4.859813e-04   p_cons 1.053037e-02   p_joint 4.859813e-04

Joint ci ratio: 1.210597e-01	ci left: 4.579289e-04	ci right 5.173835e-04	k: 1047	n:2150000
Cons ci ratio: 2.591603e-02	ci left: 1.039283e-02	ci right 1.066616e-02	k: 22637	n:2150000
KS ci ratio: 1.210597e-01	ci left: 4.579289e-04	ci right 5.173835e-04	k: 1047	n:2150000
PIAS1   2150000 perm   2233 sec   (963 perm/sec)   p_kst 4.869767e-04   p_cons 1.052884e-02   p_joint 4.869767e-04

Joint ci ratio: 1.207146e-01	ci left: 4.585027e-04	ci right 5.178499e-04	k: 1053	n:2160000
Cons ci ratio: 2.585958e-02	ci left: 1.039025e-02	ci right 1.066291e-02	k: 22736	n:2160000
KS ci ratio: 1.207146e-01	ci left: 4.585027e-04	ci right 5.178499e-04	k: 1053	n:2160000
PIAS1   2160000 perm   2252 sec   (959 perm/sec)   p_kst 4.875000e-04   p_cons 1.052593e-02   p_joint 4.875000e-04

Joint ci ratio: 1.205432e-01	ci left: 4.577305e-04	ci right 5.168877e-04	k: 1056	n:2170000
Cons ci ratio: 2.580122e-02	ci left: 1.038953e-02	ci right 1.066155e-02	k: 22839	n:2170000
KS ci ratio: 1.205432e-01	ci left: 4.577305e-04	ci right 5.168877e-04	k: 1056	n:2170000
PIAS1   2170000 perm   2271 sec   (956 perm/sec)   p_kst 4.866359e-04   p_cons 1.052488e-02   p_joint 4.866359e-04

Joint ci ratio: 1.199768e-01	ci left: 4.600800e-04	ci right 5.192417e-04	k: 1066	n:2180000
Cons ci ratio: 2.573872e-02	ci left: 1.039246e-02	ci right 1.066389e-02	k: 22950	n:2180000
KS ci ratio: 1.199768e-01	ci left: 4.600800e-04	ci right 5.192417e-04	k: 1066	n:2180000
PIAS1   2180000 perm   2290 sec   (952 perm/sec)   p_kst 4.889908e-04   p_cons 1.052752e-02   p_joint 4.889908e-04

Joint ci ratio: 1.196409e-01	ci left: 4.606368e-04	ci right 5.196925e-04	k: 1072	n:2190000
Cons ci ratio: 2.567723e-02	ci left: 1.039491e-02	ci right 1.066574e-02	k: 23060	n:2190000
KS ci ratio: 1.196409e-01	ci left: 4.606368e-04	ci right 5.196925e-04	k: 1072	n:2190000
PIAS1   2190000 perm   2310 sec   (948 perm/sec)   p_kst 4.894977e-04   p_cons 1.052968e-02   p_joint 4.894977e-04

Joint ci ratio: 1.192525e-01	ci left: 4.616298e-04	ci right 5.206071e-04	k: 1079	n:2200000
Cons ci ratio: 2.562121e-02	ci left: 1.039328e-02	ci right 1.066347e-02	k: 23161	n:2200000
KS ci ratio: 1.192525e-01	ci left: 4.616298e-04	ci right 5.206071e-04	k: 1079	n:2200000
PIAS1   2200000 perm   2329 sec   (945 perm/sec)   p_kst 4.904545e-04   p_cons 1.052773e-02   p_joint 4.904545e-04

Joint ci ratio: 1.190873e-01	ci left: 4.608580e-04	ci right 5.196493e-04	k: 1082	n:2210000
Cons ci ratio: 2.556944e-02	ci left: 1.038851e-02	ci right 1.065802e-02	k: 23255	n:2210000
KS ci ratio: 1.190873e-01	ci left: 4.608580e-04	ci right 5.196493e-04	k: 1082	n:2210000
PIAS1   2210000 perm   2348 sec   (941 perm/sec)   p_kst 4.895928e-04   p_cons 1.052262e-02   p_joint 4.895928e-04

Joint ci ratio: 1.188680e-01	ci left: 4.605302e-04	ci right 5.191640e-04	k: 1086	n:2220000
Cons ci ratio: 2.550916e-02	ci left: 1.039095e-02	ci right 1.065988e-02	k: 23365	n:2220000
KS ci ratio: 1.188680e-01	ci left: 4.605302e-04	ci right 5.191640e-04	k: 1086	n:2220000
PIAS1   2220000 perm   2367 sec   (938 perm/sec)   p_kst 4.891892e-04   p_cons 1.052477e-02   p_joint 4.891892e-04

Joint ci ratio: 1.188134e-01	ci left: 4.589001e-04	ci right 5.172977e-04	k: 1087	n:2230000
Cons ci ratio: 2.546081e-02	ci left: 1.038401e-02	ci right 1.065224e-02	k: 23454	n:2230000
KS ci ratio: 1.188134e-01	ci left: 4.589001e-04	ci right 5.172977e-04	k: 1087	n:2230000
PIAS1   2230000 perm   2386 sec   (934 perm/sec)   p_kst 4.874439e-04   p_cons 1.051749e-02   p_joint 4.874439e-04

Joint ci ratio: 1.187045e-01	ci left: 4.577178e-04	ci right 5.159077e-04	k: 1089	n:2240000
Cons ci ratio: 2.540892e-02	ci left: 1.038024e-02	ci right 1.064782e-02	k: 23550	n:2240000
KS ci ratio: 1.187045e-01	ci left: 4.577178e-04	ci right 5.159077e-04	k: 1089	n:2240000
PIAS1   2240000 perm   2406 sec   (931 perm/sec)   p_kst 4.861607e-04   p_cons 1.051339e-02   p_joint 4.861607e-04

Joint ci ratio: 1.184331e-01	ci left: 4.578398e-04	ci right 5.159028e-04	k: 1094	n:2250000
Cons ci ratio: 2.535842e-02	ci left: 1.037561e-02	ci right 1.064254e-02	k: 23644	n:2250000
KS ci ratio: 1.184331e-01	ci left: 4.578398e-04	ci right 5.159028e-04	k: 1094	n:2250000
PIAS1   2250000 perm   2425 sec   (928 perm/sec)   p_kst 4.862222e-04   p_cons 1.050844e-02   p_joint 4.862222e-04

Joint ci ratio: 1.182713e-01	ci left: 4.571021e-04	ci right 5.149868e-04	k: 1097	n:2260000
Cons ci ratio: 2.529908e-02	ci left: 1.037851e-02	ci right 1.064487e-02	k: 23755	n:2260000
KS ci ratio: 1.182713e-01	ci left: 4.571021e-04	ci right 5.149868e-04	k: 1097	n:2260000
PIAS1   2260000 perm   2445 sec   (924 perm/sec)   p_kst 4.853982e-04   p_cons 1.051106e-02   p_joint 4.853982e-04

Joint ci ratio: 1.181101e-01	ci left: 4.563709e-04	ci right 5.140788e-04	k: 1100	n:2270000
Cons ci ratio: 2.524496e-02	ci left: 1.037744e-02	ci right 1.064320e-02	k: 23857	n:2270000
KS ci ratio: 1.181101e-01	ci left: 4.563709e-04	ci right 5.140788e-04	k: 1100	n:2270000
PIAS1   2270000 perm   2465 sec   (921 perm/sec)   p_kst 4.845815e-04   p_cons 1.050969e-02   p_joint 4.845815e-04

Joint ci ratio: 1.178428e-01	ci left: 4.564976e-04	ci right 5.140817e-04	k: 1105	n:2280000
Cons ci ratio: 2.518269e-02	ci left: 1.038335e-02	ci right 1.064860e-02	k: 23975	n:2280000
KS ci ratio: 1.178428e-01	ci left: 4.564976e-04	ci right 5.140817e-04	k: 1105	n:2280000
PIAS1   2280000 perm   2485 sec   (918 perm/sec)   p_kst 4.846491e-04   p_cons 1.051535e-02   p_joint 4.846491e-04

Joint ci ratio: 1.175773e-01	ci left: 4.566233e-04	ci right 5.140845e-04	k: 1110	n:2290000
Cons ci ratio: 2.513089e-02	ci left: 1.038097e-02	ci right 1.064560e-02	k: 24074	n:2290000
KS ci ratio: 1.175773e-01	ci left: 4.566233e-04	ci right 5.140845e-04	k: 1110	n:2290000
PIAS1   2290000 perm   2504 sec   (914 perm/sec)   p_kst 4.847162e-04   p_cons 1.051266e-02   p_joint 4.847162e-04

Joint ci ratio: 1.172611e-01	ci left: 4.571700e-04	ci right 5.145346e-04	k: 1116	n:2300000
Cons ci ratio: 2.507889e-02	ci left: 1.037904e-02	ci right 1.064307e-02	k: 24174	n:2300000
KS ci ratio: 1.172611e-01	ci left: 4.571700e-04	ci right 5.145346e-04	k: 1116	n:2300000
PIAS1   2300000 perm   2524 sec   (911 perm/sec)   p_kst 4.852174e-04   p_cons 1.051043e-02   p_joint 4.852174e-04

Joint ci ratio: 1.168953e-01	ci left: 4.581325e-04	ci right 5.154262e-04	k: 1123	n:2310000
Cons ci ratio: 2.502564e-02	ci left: 1.037842e-02	ci right 1.064186e-02	k: 24277	n:2310000
KS ci ratio: 1.168953e-01	ci left: 4.581325e-04	ci right 5.154262e-04	k: 1123	n:2310000
PIAS1   2310000 perm   2544 sec   (908 perm/sec)   p_kst 4.861472e-04   p_cons 1.050952e-02   p_joint 4.861472e-04

Joint ci ratio: 1.164815e-01	ci left: 4.595054e-04	ci right 5.167534e-04	k: 1131	n:2320000
Cons ci ratio: 2.497481e-02	ci left: 1.037609e-02	ci right 1.063893e-02	k: 24376	n:2320000
KS ci ratio: 1.164815e-01	ci left: 4.595054e-04	ci right 5.167534e-04	k: 1131	n:2320000
PIAS1   2320000 perm   2564 sec   (905 perm/sec)   p_kst 4.875000e-04   p_cons 1.050690e-02   p_joint 4.875000e-04

Joint ci ratio: 1.161740e-01	ci left: 4.600335e-04	ci right 5.171855e-04	k: 1137	n:2330000
Cons ci ratio: 2.491348e-02	ci left: 1.038274e-02	ci right 1.064509e-02	k: 24496	n:2330000
KS ci ratio: 1.161740e-01	ci left: 4.600335e-04	ci right 5.171855e-04	k: 1137	n:2330000
PIAS1   2330000 perm   2584 sec   (902 perm/sec)   p_kst 4.879828e-04   p_cons 1.051330e-02   p_joint 4.879828e-04

Joint ci ratio: 1.158182e-01	ci left: 4.609722e-04	ci right 5.180535e-04	k: 1144	n:2340000
Cons ci ratio: 2.485873e-02	ci left: 1.038423e-02	ci right 1.064604e-02	k: 24604	n:2340000
KS ci ratio: 1.158182e-01	ci left: 4.609722e-04	ci right 5.180535e-04	k: 1144	n:2340000
PIAS1   2340000 perm   2605 sec   (898 perm/sec)   p_kst 4.888889e-04   p_cons 1.051453e-02   p_joint 4.888889e-04

Joint ci ratio: 1.154658e-01	ci left: 4.619032e-04	ci right 5.189139e-04	k: 1151	n:2350000
Cons ci ratio: 2.480941e-02	ci left: 1.038149e-02	ci right 1.064270e-02	k: 24702	n:2350000
KS ci ratio: 1.154658e-01	ci left: 4.619032e-04	ci right 5.189139e-04	k: 1151	n:2350000
PIAS1   2350000 perm   2625 sec   (895 perm/sec)   p_kst 4.897872e-04   p_cons 1.051149e-02   p_joint 4.897872e-04

Joint ci ratio: 1.152659e-01	ci left: 4.615920e-04	ci right 5.184589e-04	k: 1155	n:2360000
Cons ci ratio: 2.475483e-02	ci left: 1.038340e-02	ci right 1.064408e-02	k: 24811	n:2360000
KS ci ratio: 1.152659e-01	ci left: 4.615920e-04	ci right 5.184589e-04	k: 1155	n:2360000
PIAS1   2360000 perm   2645 sec   (892 perm/sec)   p_kst 4.894068e-04   p_cons 1.051314e-02   p_joint 4.894068e-04

Joint ci ratio: 1.150670e-01	ci left: 4.612835e-04	ci right 5.180077e-04	k: 1159	n:2370000
Cons ci ratio: 2.470112e-02	ci left: 1.038488e-02	ci right 1.064502e-02	k: 24919	n:2370000
KS ci ratio: 1.150670e-01	ci left: 4.612835e-04	ci right 5.180077e-04	k: 1159	n:2370000
PIAS1   2370000 perm   2666 sec   (889 perm/sec)   p_kst 4.890295e-04   p_cons 1.051435e-02   p_joint 4.890295e-04

Joint ci ratio: 1.149185e-01	ci left: 4.605696e-04	ci right 5.171279e-04	k: 1162	n:2380000
Cons ci ratio: 2.464427e-02	ci left: 1.038926e-02	ci right 1.064891e-02	k: 25034	n:2380000
KS ci ratio: 1.149185e-01	ci left: 4.605696e-04	ci right 5.171279e-04	k: 1162	n:2380000
PIAS1   2380000 perm   2687 sec   (886 perm/sec)   p_kst 4.882353e-04   p_cons 1.051849e-02   p_joint 4.882353e-04

Joint ci ratio: 1.144763e-01	ci left: 4.623002e-04	ci right 5.188379e-04	k: 1171	n:2390000
Cons ci ratio: 2.459226e-02	ci left: 1.038987e-02	ci right 1.064897e-02	k: 25140	n:2390000
KS ci ratio: 1.144763e-01	ci left: 4.623002e-04	ci right 5.188379e-04	k: 1171	n:2390000
PIAS1   2390000 perm   2707 sec   (883 perm/sec)   p_kst 4.899582e-04   p_cons 1.051883e-02   p_joint 4.899582e-04

Joint ci ratio: 1.142329e-01	ci left: 4.623977e-04	ci right 5.188189e-04	k: 1176	n:2400000
Cons ci ratio: 2.453861e-02	ci left: 1.039213e-02	ci right 1.065072e-02	k: 25250	n:2400000
KS ci ratio: 1.142329e-01	ci left: 4.623977e-04	ci right 5.188189e-04	k: 1176	n:2400000
PIAS1   2400000 perm   2728 sec   (880 perm/sec)   p_kst 4.900000e-04   p_cons 1.052083e-02   p_joint 4.900000e-04

Joint ci ratio: 1.140393e-01	ci left: 4.620914e-04	ci right 5.183733e-04	k: 1180	n:2410000
Cons ci ratio: 2.449214e-02	ci left: 1.038860e-02	ci right 1.064660e-02	k: 25346	n:2410000
KS ci ratio: 1.140393e-01	ci left: 4.620914e-04	ci right 5.183733e-04	k: 1180	n:2410000
PIAS1   2410000 perm   2749 sec   (877 perm/sec)   p_kst 4.896266e-04   p_cons 1.051701e-02   p_joint 4.896266e-04

Joint ci ratio: 1.137507e-01	ci left: 4.625906e-04	ci right 5.187812e-04	k: 1186	n:2420000
Cons ci ratio: 2.444740e-02	ci left: 1.038387e-02	ci right 1.064127e-02	k: 25439	n:2420000
KS ci ratio: 1.137507e-01	ci left: 4.625906e-04	ci right 5.187812e-04	k: 1186	n:2420000
PIAS1   2420000 perm   2770 sec   (874 perm/sec)   p_kst 4.900826e-04   p_cons 1.051198e-02   p_joint 4.900826e-04

Joint ci ratio: 1.134643e-01	ci left: 4.630859e-04	ci right 5.191855e-04	k: 1192	n:2430000
Cons ci ratio: 2.439710e-02	ci left: 1.038408e-02	ci right 1.064096e-02	k: 25544	n:2430000
KS ci ratio: 1.134643e-01	ci left: 4.630859e-04	ci right 5.191855e-04	k: 1192	n:2430000
PIAS1   2430000 perm   2791 sec   (871 perm/sec)   p_kst 4.905350e-04   p_cons 1.051193e-02   p_joint 4.905350e-04

Joint ci ratio: 1.131800e-01	ci left: 4.635774e-04	ci right 5.195864e-04	k: 1198	n:2440000
Cons ci ratio: 2.433417e-02	ci left: 1.039529e-02	ci right 1.065177e-02	k: 25676	n:2440000
KS ci ratio: 1.131800e-01	ci left: 4.635774e-04	ci right 5.195864e-04	k: 1198	n:2440000
PIAS1   2440000 perm   2813 sec   (868 perm/sec)   p_kst 4.909836e-04   p_cons 1.052295e-02   p_joint 4.909836e-04

Joint ci ratio: 1.130387e-01	ci left: 4.628751e-04	ci right 5.187248e-04	k: 1201	n:2450000
Cons ci ratio: 2.428172e-02	ci left: 1.039789e-02	ci right 1.065388e-02	k: 25787	n:2450000
KS ci ratio: 1.130387e-01	ci left: 4.628751e-04	ci right 5.187248e-04	k: 1201	n:2450000
PIAS1   2450000 perm   2834 sec   (865 perm/sec)   p_kst 4.902041e-04   p_cons 1.052531e-02   p_joint 4.902041e-04

Joint ci ratio: 1.128043e-01	ci left: 4.629686e-04	ci right 5.187060e-04	k: 1206	n:2460000
Cons ci ratio: 2.423196e-02	ci left: 1.039845e-02	ci right 1.065392e-02	k: 25893	n:2460000
KS ci ratio: 1.128043e-01	ci left: 4.629686e-04	ci right 5.187060e-04	k: 1206	n:2460000
PIAS1   2460000 perm   2855 sec   (862 perm/sec)   p_kst 4.902439e-04   p_cons 1.052561e-02   p_joint 4.902439e-04

Joint ci ratio: 1.127111e-01	ci left: 4.618811e-04	ci right 5.174386e-04	k: 1208	n:2470000
Cons ci ratio: 2.418204e-02	ci left: 1.039941e-02	ci right 1.065437e-02	k: 26000	n:2470000
KS ci ratio: 1.127111e-01	ci left: 4.618811e-04	ci right 5.174386e-04	k: 1208	n:2470000
PIAS1   2470000 perm   2877 sec   (859 perm/sec)   p_kst 4.890688e-04   p_cons 1.052632e-02   p_joint 4.890688e-04

Joint ci ratio: 1.123861e-01	ci left: 4.627618e-04	ci right 5.182541e-04	k: 1215	n:2480000
Cons ci ratio: 2.413290e-02	ci left: 1.039996e-02	ci right 1.065441e-02	k: 26106	n:2480000
KS ci ratio: 1.123861e-01	ci left: 4.627618e-04	ci right 5.182541e-04	k: 1215	n:2480000
PIAS1   2480000 perm   2898 sec   (856 perm/sec)   p_kst 4.899194e-04   p_cons 1.052661e-02   p_joint 4.899194e-04

Joint ci ratio: 1.120640e-01	ci left: 4.636356e-04	ci right 5.190629e-04	k: 1222	n:2490000
Cons ci ratio: 2.408127e-02	ci left: 1.040291e-02	ci right 1.065687e-02	k: 26218	n:2490000
KS ci ratio: 1.120640e-01	ci left: 4.636356e-04	ci right 5.190629e-04	k: 1222	n:2490000
PIAS1   2490000 perm   2920 sec   (853 perm/sec)   p_kst 4.907631e-04   p_cons 1.052932e-02   p_joint 4.907631e-04

Joint ci ratio: 1.114729e-01	ci left: 4.668358e-04	ci right 5.223319e-04	k: 1235	n:2500000
Cons ci ratio: 2.403135e-02	ci left: 1.040463e-02	ci right 1.065810e-02	k: 26327	n:2500000
KS ci ratio: 1.114729e-01	ci left: 4.668358e-04	ci right 5.223319e-04	k: 1235	n:2500000
PIAS1   2500000 perm   2942 sec   (850 perm/sec)   p_kst 4.940000e-04   p_cons 1.053080e-02   p_joint 4.940000e-04

Joint ci ratio: 1.112481e-01	ci left: 4.669124e-04	ci right 5.222984e-04	k: 1240	n:2510000
Cons ci ratio: 2.399045e-02	ci left: 1.039882e-02	ci right 1.065171e-02	k: 26417	n:2510000
KS ci ratio: 1.112481e-01	ci left: 4.669124e-04	ci right 5.222984e-04	k: 1240	n:2510000
PIAS1   2510000 perm   2964 sec   (847 perm/sec)   p_kst 4.940239e-04   p_cons 1.052470e-02   p_joint 4.940239e-04

Joint ci ratio: 1.110247e-01	ci left: 4.669886e-04	ci right 5.222650e-04	k: 1245	n:2520000
Cons ci ratio: 2.393927e-02	ci left: 1.040213e-02	ci right 1.065455e-02	k: 26530	n:2520000
KS ci ratio: 1.110247e-01	ci left: 4.669886e-04	ci right 5.222650e-04	k: 1245	n:2520000
PIAS1   2520000 perm   2985 sec   (844 perm/sec)   p_kst 4.940476e-04   p_cons 1.052778e-02   p_joint 4.940476e-04

Joint ci ratio: 1.108026e-01	ci left: 4.670642e-04	ci right 5.222318e-04	k: 1250	n:2530000
Cons ci ratio: 2.389657e-02	ci left: 1.039834e-02	ci right 1.065022e-02	k: 26625	n:2530000
KS ci ratio: 1.108026e-01	ci left: 4.670642e-04	ci right 5.222318e-04	k: 1250	n:2530000
PIAS1   2530000 perm   3007 sec   (841 perm/sec)   p_kst 4.940711e-04   p_cons 1.052372e-02   p_joint 4.940711e-04

Joint ci ratio: 1.107142e-01	ci left: 4.659910e-04	ci right 5.209850e-04	k: 1252	n:2540000
Cons ci ratio: 2.384644e-02	ci left: 1.040123e-02	ci right 1.065264e-02	k: 26737	n:2540000
KS ci ratio: 1.107142e-01	ci left: 4.659910e-04	ci right 5.209850e-04	k: 1252	n:2540000
PIAS1   2540000 perm   3029 sec   (838 perm/sec)   p_kst 4.929134e-04   p_cons 1.052638e-02   p_joint 4.929134e-04

Joint ci ratio: 1.106260e-01	ci left: 4.649261e-04	ci right 5.197480e-04	k: 1254	n:2550000
Cons ci ratio: 2.380334e-02	ci left: 1.039825e-02	ci right 1.064913e-02	k: 26834	n:2550000
KS ci ratio: 1.106260e-01	ci left: 4.649261e-04	ci right 5.197480e-04	k: 1254	n:2550000
PIAS1   2550000 perm   3052 sec   (836 perm/sec)   p_kst 4.917647e-04   p_cons 1.052314e-02   p_joint 4.917647e-04

Joint ci ratio: 1.104063e-01	ci left: 4.650092e-04	ci right 5.197248e-04	k: 1259	n:2560000
Cons ci ratio: 2.376092e-02	ci left: 1.039491e-02	ci right 1.064526e-02	k: 26930	n:2560000
KS ci ratio: 1.104063e-01	ci left: 4.650092e-04	ci right 5.197248e-04	k: 1259	n:2560000
PIAS1   2560000 perm   3074 sec   (833 perm/sec)   p_kst 4.917969e-04   p_cons 1.051953e-02   p_joint 4.917969e-04

Joint ci ratio: 1.101008e-01	ci left: 4.658484e-04	ci right 5.205013e-04	k: 1266	n:2570000
Cons ci ratio: 2.371296e-02	ci left: 1.039663e-02	ci right 1.064650e-02	k: 27039	n:2570000
KS ci ratio: 1.101008e-01	ci left: 4.658484e-04	ci right 5.205013e-04	k: 1266	n:2570000
PIAS1   2570000 perm   3096 sec   (830 perm/sec)   p_kst 4.926070e-04   p_cons 1.052101e-02   p_joint 4.926070e-04

Joint ci ratio: 1.097118e-01	ci left: 4.674353e-04	ci right 5.220681e-04	k: 1275	n:2580000
Cons ci ratio: 2.365473e-02	ci left: 1.040758e-02	ci right 1.065709e-02	k: 27172	n:2580000
KS ci ratio: 1.097118e-01	ci left: 4.674353e-04	ci right 5.220681e-04	k: 1275	n:2580000
PIAS1   2580000 perm   3118 sec   (827 perm/sec)   p_kst 4.941860e-04   p_cons 1.053178e-02   p_joint 4.941860e-04

Joint ci ratio: 1.095402e-01	ci left: 4.671326e-04	ci right 5.216391e-04	k: 1279	n:2590000
Cons ci ratio: 2.360173e-02	ci left: 1.041422e-02	ci right 1.066333e-02	k: 27294	n:2590000
KS ci ratio: 1.095402e-01	ci left: 4.671326e-04	ci right 5.216391e-04	k: 1279	n:2590000
PIAS1   2590000 perm   3141 sec   (825 perm/sec)   p_kst 4.938224e-04   p_cons 1.053822e-02   p_joint 4.938224e-04

Joint ci ratio: 1.093269e-01	ci left: 4.672064e-04	ci right 5.216085e-04	k: 1284	n:2600000
Cons ci ratio: 2.355690e-02	ci left: 1.041393e-02	ci right 1.066255e-02	k: 27398	n:2600000
KS ci ratio: 1.093269e-01	ci left: 4.672064e-04	ci right 5.216085e-04	k: 1284	n:2600000
PIAS1   2600000 perm   3163 sec   (822 perm/sec)   p_kst 4.938462e-04   p_cons 1.053769e-02   p_joint 4.938462e-04

Joint ci ratio: 1.091572e-01	ci left: 4.669070e-04	ci right 5.211844e-04	k: 1288	n:2610000
Cons ci ratio: 2.351794e-02	ci left: 1.040869e-02	ci right 1.065677e-02	k: 27489	n:2610000
KS ci ratio: 1.091572e-01	ci left: 4.669070e-04	ci right 5.211844e-04	k: 1288	n:2610000
PIAS1   2610000 perm   3186 sec   (819 perm/sec)   p_kst 4.934866e-04   p_cons 1.053218e-02   p_joint 4.934866e-04

Joint ci ratio: 1.089461e-01	ci left: 4.669813e-04	ci right 5.211556e-04	k: 1293	n:2620000
Cons ci ratio: 2.346714e-02	ci left: 1.041411e-02	ci right 1.066178e-02	k: 27608	n:2620000
KS ci ratio: 1.089461e-01	ci left: 4.669813e-04	ci right 5.211556e-04	k: 1293	n:2620000
PIAS1   2620000 perm   3208 sec   (817 perm/sec)   p_kst 4.935115e-04   p_cons 1.053740e-02   p_joint 4.935115e-04

Joint ci ratio: 1.086943e-01	ci left: 4.674249e-04	ci right 5.215175e-04	k: 1299	n:2630000
Cons ci ratio: 2.342436e-02	ci left: 1.041269e-02	ci right 1.065987e-02	k: 27709	n:2630000
KS ci ratio: 1.086943e-01	ci left: 4.674249e-04	ci right 5.215175e-04	k: 1299	n:2630000
PIAS1   2630000 perm   3230 sec   (814 perm/sec)   p_kst 4.939163e-04   p_cons 1.053574e-02   p_joint 4.939163e-04

Joint ci ratio: 1.084028e-01	ci left: 4.682339e-04	ci right 5.222655e-04	k: 1306	n:2640000
Cons ci ratio: 2.338563e-02	ci left: 1.040790e-02	ci right 1.065454e-02	k: 27801	n:2640000
KS ci ratio: 1.084028e-01	ci left: 4.682339e-04	ci right 5.222655e-04	k: 1306	n:2640000
PIAS1   2640000 perm   3252 sec   (812 perm/sec)   p_kst 4.946970e-04   p_cons 1.053068e-02   p_joint 4.946970e-04

Joint ci ratio: 1.081137e-01	ci left: 4.690370e-04	ci right 5.230077e-04	k: 1313	n:2650000
Cons ci ratio: 2.334667e-02	ci left: 1.040351e-02	ci right 1.064964e-02	k: 27894	n:2650000
KS ci ratio: 1.081137e-01	ci left: 4.690370e-04	ci right 5.230077e-04	k: 1313	n:2650000
PIAS1   2650000 perm   3275 sec   (809 perm/sec)   p_kst 4.954717e-04   p_cons 1.052604e-02   p_joint 4.954717e-04

Joint ci ratio: 1.079495e-01	ci left: 4.687368e-04	ci right 5.225858e-04	k: 1317	n:2660000
Cons ci ratio: 2.330159e-02	ci left: 1.040476e-02	ci right 1.065044e-02	k: 28002	n:2660000
KS ci ratio: 1.079495e-01	ci left: 4.687368e-04	ci right 5.225858e-04	k: 1317	n:2660000
PIAS1   2660000 perm   3298 sec   (807 perm/sec)   p_kst 4.951128e-04   p_cons 1.052707e-02   p_joint 4.951128e-04

Joint ci ratio: 1.077453e-01	ci left: 4.688034e-04	ci right 5.225517e-04	k: 1322	n:2670000
Cons ci ratio: 2.326054e-02	ci left: 1.040266e-02	ci right 1.064784e-02	k: 28101	n:2670000
KS ci ratio: 1.077453e-01	ci left: 4.688034e-04	ci right 5.225517e-04	k: 1322	n:2670000
PIAS1   2670000 perm   3321 sec   (804 perm/sec)   p_kst 4.951311e-04   p_cons 1.052472e-02   p_joint 4.951311e-04

Joint ci ratio: 1.075828e-01	ci left: 4.685065e-04	ci right 5.221346e-04	k: 1326	n:2680000
Cons ci ratio: 2.322844e-02	ci left: 1.039278e-02	ci right 1.063739e-02	k: 28179	n:2680000
KS ci ratio: 1.075828e-01	ci left: 4.685065e-04	ci right 5.221346e-04	k: 1326	n:2680000
PIAS1   2680000 perm   3343 sec   (802 perm/sec)   p_kst 4.947761e-04   p_cons 1.051455e-02   p_joint 4.947761e-04

Joint ci ratio: 1.073404e-01	ci left: 4.689354e-04	ci right 5.224840e-04	k: 1332	n:2690000
Cons ci ratio: 2.318405e-02	ci left: 1.039406e-02	ci right 1.063822e-02	k: 28287	n:2690000
KS ci ratio: 1.073404e-01	ci left: 4.689354e-04	ci right 5.224840e-04	k: 1332	n:2690000
PIAS1   2690000 perm   3366 sec   (799 perm/sec)   p_kst 4.951673e-04   p_cons 1.051561e-02   p_joint 4.951673e-04

Joint ci ratio: 1.073003e-01	ci left: 4.675590e-04	ci right 5.209292e-04	k: 1333	n:2700000
Cons ci ratio: 2.314567e-02	ci left: 1.039017e-02	ci right 1.063384e-02	k: 28381	n:2700000
KS ci ratio: 1.073003e-01	ci left: 4.675590e-04	ci right 5.209292e-04	k: 1333	n:2700000
PIAS1   2700000 perm   3390 sec   (797 perm/sec)   p_kst 4.937037e-04   p_cons 1.051148e-02   p_joint 4.937037e-04

Joint ci ratio: 1.071798e-01	ci left: 4.669110e-04	ci right 5.201437e-04	k: 1336	n:2710000
Cons ci ratio: 2.310626e-02	ci left: 1.038742e-02	ci right 1.063060e-02	k: 28478	n:2710000
KS ci ratio: 1.071798e-01	ci left: 4.669110e-04	ci right 5.201437e-04	k: 1336	n:2710000
PIAS1   2710000 perm   3413 sec   (794 perm/sec)   p_kst 4.929889e-04   p_cons 1.050849e-02   p_joint 4.929889e-04

Joint ci ratio: 1.071399e-01	ci left: 4.655522e-04	ci right 5.186089e-04	k: 1337	n:2720000
Cons ci ratio: 2.306622e-02	ci left: 1.038542e-02	ci right 1.062813e-02	k: 28577	n:2720000
KS ci ratio: 1.071399e-01	ci left: 4.655522e-04	ci right 5.186089e-04	k: 1337	n:2720000
PIAS1   2720000 perm   3437 sec   (791 perm/sec)   p_kst 4.915441e-04   p_cons 1.050625e-02   p_joint 4.915441e-04

Joint ci ratio: 1.070599e-01	ci left: 4.645598e-04	ci right 5.174615e-04	k: 1339	n:2730000
Cons ci ratio: 2.301951e-02	ci left: 1.038962e-02	ci right 1.063193e-02	k: 28693	n:2730000
KS ci ratio: 1.070599e-01	ci left: 4.645598e-04	ci right 5.174615e-04	k: 1339	n:2730000
PIAS1   2730000 perm   3460 sec   (789 perm/sec)   p_kst 4.904762e-04   p_cons 1.051026e-02   p_joint 4.904762e-04

Joint ci ratio: 1.068608e-01	ci left: 4.646404e-04	ci right 5.174465e-04	k: 1344	n:2740000
Cons ci ratio: 2.297791e-02	ci left: 1.038944e-02	ci right 1.063130e-02	k: 28797	n:2740000
KS ci ratio: 1.068608e-01	ci left: 4.646404e-04	ci right 5.174465e-04	k: 1344	n:2740000
PIAS1   2740000 perm   3484 sec   (787 perm/sec)   p_kst 4.905109e-04   p_cons 1.050985e-02   p_joint 4.905109e-04

Joint ci ratio: 1.065049e-01	ci left: 4.661362e-04	ci right 5.189249e-04	k: 1353	n:2750000
Cons ci ratio: 2.293653e-02	ci left: 1.038926e-02	ci right 1.063068e-02	k: 28901	n:2750000
KS ci ratio: 1.065049e-01	ci left: 4.661362e-04	ci right 5.189249e-04	k: 1353	n:2750000
PIAS1   2750000 perm   3507 sec   (784 perm/sec)   p_kst 4.920000e-04   p_cons 1.050945e-02   p_joint 4.920000e-04

Joint ci ratio: 1.063088e-01	ci left: 4.662107e-04	ci right 5.189045e-04	k: 1358	n:2760000
Cons ci ratio: 2.289139e-02	ci left: 1.039269e-02	ci right 1.063370e-02	k: 29015	n:2760000
KS ci ratio: 1.063088e-01	ci left: 4.662107e-04	ci right 5.189045e-04	k: 1358	n:2760000
PIAS1   2760000 perm   3531 sec   (782 perm/sec)   p_kst 4.920290e-04   p_cons 1.051268e-02   p_joint 4.920290e-04

Joint ci ratio: 1.061527e-01	ci left: 4.659333e-04	ci right 5.185136e-04	k: 1362	n:2770000
Cons ci ratio: 2.284930e-02	ci left: 1.039358e-02	ci right 1.063416e-02	k: 29122	n:2770000
KS ci ratio: 1.061527e-01	ci left: 4.659333e-04	ci right 5.185136e-04	k: 1362	n:2770000
PIAS1   2770000 perm   3555 sec   (779 perm/sec)   p_kst 4.916968e-04   p_cons 1.051336e-02   p_joint 4.916968e-04

Joint ci ratio: 1.058812e-01	ci left: 4.667085e-04	ci right 5.192332e-04	k: 1369	n:2780000
Cons ci ratio: 2.281374e-02	ci left: 1.038874e-02	ci right 1.062883e-02	k: 29213	n:2780000
KS ci ratio: 1.058812e-01	ci left: 4.667085e-04	ci right 5.192332e-04	k: 1369	n:2780000
PIAS1   2780000 perm   3579 sec   (777 perm/sec)   p_kst 4.924460e-04   p_cons 1.050827e-02   p_joint 4.924460e-04

Joint ci ratio: 1.056500e-01	ci left: 4.671293e-04	ci right 5.195795e-04	k: 1375	n:2790000
Cons ci ratio: 2.277678e-02	ci left: 1.038536e-02	ci right 1.062498e-02	k: 29308	n:2790000
KS ci ratio: 1.056500e-01	ci left: 4.671293e-04	ci right 5.195795e-04	k: 1375	n:2790000
PIAS1   2790000 perm   3603 sec   (774 perm/sec)   p_kst 4.928315e-04   p_cons 1.050466e-02   p_joint 4.928315e-04

Joint ci ratio: 1.056117e-01	ci left: 4.658087e-04	ci right 5.180905e-04	k: 1376	n:2800000
Cons ci ratio: 2.272633e-02	ci left: 1.039443e-02	ci right 1.063372e-02	k: 29438	n:2800000
KS ci ratio: 1.056117e-01	ci left: 4.658087e-04	ci right 5.180905e-04	k: 1376	n:2800000
PIAS1   2800000 perm   3627 sec   (772 perm/sec)   p_kst 4.914286e-04   p_cons 1.051357e-02   p_joint 4.914286e-04

Joint ci ratio: 1.053443e-01	ci left: 4.665764e-04	ci right 5.188035e-04	k: 1383	n:2810000
Cons ci ratio: 2.268552e-02	ci left: 1.039495e-02	ci right 1.063382e-02	k: 29544	n:2810000
KS ci ratio: 1.053443e-01	ci left: 4.665764e-04	ci right 5.188035e-04	k: 1383	n:2810000
PIAS1   2810000 perm   3652 sec   (770 perm/sec)   p_kst 4.921708e-04   p_cons 1.051388e-02   p_joint 4.921708e-04

Joint ci ratio: 1.052303e-01	ci left: 4.659577e-04	ci right 5.180556e-04	k: 1386	n:2820000
Cons ci ratio: 2.264725e-02	ci left: 1.039335e-02	ci right 1.063177e-02	k: 29644	n:2820000
KS ci ratio: 1.052303e-01	ci left: 4.659577e-04	ci right 5.180556e-04	k: 1386	n:2820000
PIAS1   2820000 perm   3676 sec   (767 perm/sec)   p_kst 4.914894e-04   p_cons 1.051206e-02   p_joint 4.914894e-04

Joint ci ratio: 1.050034e-01	ci left: 4.663756e-04	ci right 5.184009e-04	k: 1392	n:2830000
Cons ci ratio: 2.261532e-02	ci left: 1.038614e-02	ci right 1.062405e-02	k: 29728	n:2830000
KS ci ratio: 1.050034e-01	ci left: 4.663756e-04	ci right 5.184009e-04	k: 1392	n:2830000
PIAS1   2830000 perm   3700 sec   (765 perm/sec)   p_kst 4.918728e-04   p_cons 1.050459e-02   p_joint 4.918728e-04

Joint ci ratio: 1.048155e-01	ci left: 4.664478e-04	ci right 5.183823e-04	k: 1397	n:2840000
Cons ci ratio: 2.257090e-02	ci left: 1.039053e-02	ci right 1.062808e-02	k: 29845	n:2840000
KS ci ratio: 1.048155e-01	ci left: 4.664478e-04	ci right 5.183823e-04	k: 1397	n:2840000
PIAS1   2840000 perm   3724 sec   (763 perm/sec)   p_kst 4.919014e-04   p_cons 1.050880e-02   p_joint 4.919014e-04

Joint ci ratio: 1.043314e-01	ci left: 4.692533e-04	ci right 5.212440e-04	k: 1410	n:2850000
Cons ci ratio: 2.253320e-02	ci left: 1.038896e-02	ci right 1.062607e-02	k: 29945	n:2850000
KS ci ratio: 1.043314e-01	ci left: 4.692533e-04	ci right 5.212440e-04	k: 1410	n:2850000
PIAS1   2850000 perm   3748 sec   (760 perm/sec)   p_kst 4.947368e-04   p_cons 1.050702e-02   p_joint 4.947368e-04

Joint ci ratio: 1.041838e-01	ci left: 4.689747e-04	ci right 5.208566e-04	k: 1414	n:2860000
Cons ci ratio: 2.248888e-02	ci left: 1.039366e-02	ci right 1.063041e-02	k: 30063	n:2860000
KS ci ratio: 1.041838e-01	ci left: 4.689747e-04	ci right 5.208566e-04	k: 1414	n:2860000
PIAS1   2860000 perm   3773 sec   (758 perm/sec)   p_kst 4.944056e-04   p_cons 1.051154e-02   p_joint 4.944056e-04

Joint ci ratio: 1.040736e-01	ci left: 4.683587e-04	ci right 5.201143e-04	k: 1417	n:2870000
Cons ci ratio: 2.244784e-02	ci left: 1.039556e-02	ci right 1.063191e-02	k: 30173	n:2870000
KS ci ratio: 1.040736e-01	ci left: 4.683587e-04	ci right 5.201143e-04	k: 1417	n:2870000
PIAS1   2870000 perm   3798 sec   (756 perm/sec)   p_kst 4.937282e-04   p_cons 1.051324e-02   p_joint 4.937282e-04

Joint ci ratio: 1.040370e-01	ci left: 4.670706e-04	ci right 5.186646e-04	k: 1418	n:2880000
Cons ci ratio: 2.240851e-02	ci left: 1.039606e-02	ci right 1.063200e-02	k: 30279	n:2880000
KS ci ratio: 1.040370e-01	ci left: 4.670706e-04	ci right 5.186646e-04	k: 1418	n:2880000
PIAS1   2880000 perm   3822 sec   (754 perm/sec)   p_kst 4.923611e-04   p_cons 1.051354e-02   p_joint 4.923611e-04

Joint ci ratio: 1.038177e-01	ci left: 4.674766e-04	ci right 5.190000e-04	k: 1424	n:2890000
Cons ci ratio: 2.236604e-02	ci left: 1.039966e-02	ci right 1.063523e-02	k: 30394	n:2890000
KS ci ratio: 1.038177e-01	ci left: 4.674766e-04	ci right 5.190000e-04	k: 1424	n:2890000
PIAS1   2890000 perm   3847 sec   (751 perm/sec)   p_kst 4.927336e-04   p_cons 1.051696e-02   p_joint 4.927336e-04

Joint ci ratio: 1.036361e-01	ci left: 4.675440e-04	ci right 5.189791e-04	k: 1429	n:2900000
Cons ci ratio: 2.232935e-02	ci left: 1.039809e-02	ci right 1.063323e-02	k: 30494	n:2900000
KS ci ratio: 1.036361e-01	ci left: 4.675440e-04	ci right 5.189791e-04	k: 1429	n:2900000
PIAS1   2900000 perm   3872 sec   (749 perm/sec)   p_kst 4.927586e-04   p_cons 1.051517e-02   p_joint 4.927586e-04

Joint ci ratio: 1.033473e-01	ci left: 4.686154e-04	ci right 5.200160e-04	k: 1437	n:2910000
Cons ci ratio: 2.229028e-02	ci left: 1.039892e-02	ci right 1.063367e-02	k: 30601	n:2910000
KS ci ratio: 1.033473e-01	ci left: 4.686154e-04	ci right 5.200160e-04	k: 1437	n:2910000
PIAS1   2910000 perm   3897 sec   (747 perm/sec)   p_kst 4.938144e-04   p_cons 1.051581e-02   p_joint 4.938144e-04

Joint ci ratio: 1.031324e-01	ci left: 4.690123e-04	ci right 5.203429e-04	k: 1443	n:2920000
Cons ci ratio: 2.224774e-02	ci left: 1.040316e-02	ci right 1.063754e-02	k: 30718	n:2920000
KS ci ratio: 1.031324e-01	ci left: 4.690123e-04	ci right 5.203429e-04	k: 1443	n:2920000
PIAS1   2920000 perm   3922 sec   (744 perm/sec)   p_kst 4.941781e-04   p_cons 1.051986e-02   p_joint 4.941781e-04

Joint ci ratio: 1.029543e-01	ci left: 4.690740e-04	ci right 5.203175e-04	k: 1448	n:2930000
Cons ci ratio: 2.220654e-02	ci left: 1.040634e-02	ci right 1.064036e-02	k: 30832	n:2930000
KS ci ratio: 1.029543e-01	ci left: 4.690740e-04	ci right 5.203175e-04	k: 1448	n:2930000
PIAS1   2930000 perm   3947 sec   (742 perm/sec)   p_kst 4.941980e-04   p_cons 1.052287e-02   p_joint 4.941980e-04

Joint ci ratio: 1.027771e-01	ci left: 4.691355e-04	ci right 5.202921e-04	k: 1453	n:2940000
Cons ci ratio: 2.217136e-02	ci left: 1.040409e-02	ci right 1.063769e-02	k: 30930	n:2940000
KS ci ratio: 1.027771e-01	ci left: 4.691355e-04	ci right 5.202921e-04	k: 1453	n:2940000
PIAS1   2940000 perm   3973 sec   (740 perm/sec)   p_kst 4.942177e-04   p_cons 1.052041e-02   p_joint 4.942177e-04

Joint ci ratio: 1.027065e-01	ci left: 4.682057e-04	ci right 5.192238e-04	k: 1455	n:2950000
Cons ci ratio: 2.213202e-02	ci left: 1.040591e-02	ci right 1.063912e-02	k: 31040	n:2950000
KS ci ratio: 1.027065e-01	ci left: 4.682057e-04	ci right 5.192238e-04	k: 1455	n:2950000
PIAS1   2950000 perm   3998 sec   (738 perm/sec)   p_kst 4.932203e-04   p_cons 1.052203e-02   p_joint 4.932203e-04

Joint ci ratio: 1.024956e-01	ci left: 4.685990e-04	ci right 5.195487e-04	k: 1461	n:2960000
Cons ci ratio: 2.209254e-02	ci left: 1.040805e-02	ci right 1.064089e-02	k: 31151	n:2960000
KS ci ratio: 1.024956e-01	ci left: 4.685990e-04	ci right 5.195487e-04	k: 1461	n:2960000
PIAS1   2960000 perm   4023 sec   (736 perm/sec)   p_kst 4.935811e-04   p_cons 1.052399e-02   p_joint 4.935811e-04

Joint ci ratio: 1.022510e-01	ci left: 4.693178e-04	ci right 5.202166e-04	k: 1468	n:2970000
Cons ci ratio: 2.205112e-02	ci left: 1.041218e-02	ci right 1.064467e-02	k: 31268	n:2970000
KS ci ratio: 1.022510e-01	ci left: 4.693178e-04	ci right 5.202166e-04	k: 1468	n:2970000
PIAS1   2970000 perm   4048 sec   (734 perm/sec)   p_kst 4.942761e-04   p_cons 1.052795e-02   p_joint 4.942761e-04

Joint ci ratio: 1.020428e-01	ci left: 4.697049e-04	ci right 5.205357e-04	k: 1474	n:2980000
Cons ci ratio: 2.201384e-02	ci left: 1.041261e-02	ci right 1.064472e-02	k: 31374	n:2980000
KS ci ratio: 1.020428e-01	ci left: 4.697049e-04	ci right 5.205357e-04	k: 1474	n:2980000
PIAS1   2980000 perm   4074 sec   (732 perm/sec)   p_kst 4.946309e-04   p_cons 1.052819e-02   p_joint 4.946309e-04

Joint ci ratio: 1.018703e-01	ci left: 4.697635e-04	ci right 5.205096e-04	k: 1479	n:2990000
Cons ci ratio: 2.198239e-02	ci left: 1.040772e-02	ci right 1.063938e-02	k: 31464	n:2990000
KS ci ratio: 1.018703e-01	ci left: 4.697635e-04	ci right 5.205096e-04	k: 1479	n:2990000
PIAS1   2990000 perm   4099 sec   (729 perm/sec)   p_kst 4.946488e-04   p_cons 1.052308e-02   p_joint 4.946488e-04

Joint ci ratio: 1.018016e-01	ci left: 4.688473e-04	ci right 5.194583e-04	k: 1481	n:3000000
Cons ci ratio: 2.194440e-02	ci left: 1.040916e-02	ci right 1.064045e-02	k: 31573	n:3000000
KS ci ratio: 1.018016e-01	ci left: 4.688473e-04	ci right 5.194583e-04	k: 1481	n:3000000
PIAS1   3000000 perm   4124 sec   (727 perm/sec)   p_kst 4.936667e-04   p_cons 1.052433e-02   p_joint 4.936667e-04

Joint ci ratio: 1.016303e-01	ci left: 4.689086e-04	ci right 5.194359e-04	k: 1486	n:3010000
Cons ci ratio: 2.190730e-02	ci left: 1.040994e-02	ci right 1.064084e-02	k: 31680	n:3010000
KS ci ratio: 1.016303e-01	ci left: 4.689086e-04	ci right 5.194359e-04	k: 1486	n:3010000
PIAS1   3010000 perm   4150 sec   (725 perm/sec)   p_kst 4.936877e-04   p_cons 1.052492e-02   p_joint 4.936877e-04

Joint ci ratio: 1.014259e-01	ci left: 4.692922e-04	ci right 5.197531e-04	k: 1492	n:3020000
Cons ci ratio: 2.187526e-02	ci left: 1.040609e-02	ci right 1.063657e-02	k: 31773	n:3020000
KS ci ratio: 1.014259e-01	ci left: 4.692922e-04	ci right 5.197531e-04	k: 1492	n:3020000
PIAS1   3020000 perm   4176 sec   (723 perm/sec)   p_kst 4.940397e-04   p_cons 1.052086e-02   p_joint 4.940397e-04

Joint ci ratio: 1.010878e-01	ci left: 4.709602e-04	ci right 5.214216e-04	k: 1502	n:3030000
Cons ci ratio: 2.183644e-02	ci left: 1.040884e-02	ci right 1.063896e-02	k: 31886	n:3030000
KS ci ratio: 1.010878e-01	ci left: 4.709602e-04	ci right 5.214216e-04	k: 1502	n:3030000
PIAS1   3030000 perm   4202 sec   (721 perm/sec)   p_kst 4.957096e-04   p_cons 1.052343e-02   p_joint 4.957096e-04

Joint ci ratio: 1.008532e-01	ci left: 4.716554e-04	ci right 5.220671e-04	k: 1509	n:3040000
Cons ci ratio: 2.179954e-02	ci left: 1.040993e-02	ci right 1.063969e-02	k: 31994	n:3040000
KS ci ratio: 1.008532e-01	ci left: 4.716554e-04	ci right 5.220671e-04	k: 1509	n:3040000
PIAS1   3040000 perm   4228 sec   (719 perm/sec)   p_kst 4.963816e-04   p_cons 1.052434e-02   p_joint 4.963816e-04

Joint ci ratio: 1.006534e-01	ci left: 4.720267e-04	ci right 5.223722e-04	k: 1515	n:3050000
Cons ci ratio: 2.176078e-02	ci left: 1.041297e-02	ci right 1.064238e-02	k: 32108	n:3050000
KS ci ratio: 1.006534e-01	ci left: 4.720267e-04	ci right 5.223722e-04	k: 1515	n:3050000
PIAS1   3050000 perm   4254 sec   (717 perm/sec)   p_kst 4.967213e-04   p_cons 1.052721e-02   p_joint 4.967213e-04

Joint ci ratio: 1.004878e-01	ci left: 4.720770e-04	ci right 5.223401e-04	k: 1520	n:3060000
Cons ci ratio: 2.172563e-02	ci left: 1.041275e-02	ci right 1.064178e-02	k: 32212	n:3060000
KS ci ratio: 1.004878e-01	ci left: 4.720770e-04	ci right 5.223401e-04	k: 1520	n:3060000
PIAS1   3060000 perm   4280 sec   (715 perm/sec)   p_kst 4.967320e-04   p_cons 1.052680e-02   p_joint 4.967320e-04

Joint ci ratio: 1.003231e-01	ci left: 4.721271e-04	ci right 5.223083e-04	k: 1525	n:3070000
Cons ci ratio: 2.169234e-02	ci left: 1.041090e-02	ci right 1.063953e-02	k: 32311	n:3070000
KS ci ratio: 1.003231e-01	ci left: 4.721271e-04	ci right 5.223083e-04	k: 1525	n:3070000
PIAS1   3070000 perm   4306 sec   (713 perm/sec)   p_kst 4.967427e-04   p_cons 1.052476e-02   p_joint 4.967427e-04

Joint ci ratio: 1.000611e-01	ci left: 4.731265e-04	ci right 5.232749e-04	k: 1533	n:3080000
Cons ci ratio: 2.165313e-02	ci left: 1.041488e-02	ci right 1.064318e-02	k: 32428	n:3080000
KS ci ratio: 1.000611e-01	ci left: 4.731265e-04	ci right 5.232749e-04	k: 1533	n:3080000
PIAS1   3080000 perm   4334 sec   (711 perm/sec)   p_kst 4.977273e-04   p_cons 1.052857e-02   p_joint 4.977273e-04

Joint ci ratio: 9.980112e-02	ci left: 4.741197e-04	ci right 5.242351e-04	k: 1541	n:3090000
Cons ci ratio: 2.162119e-02	ci left: 1.041208e-02	ci right 1.063998e-02	k: 32524	n:3090000
KS ci ratio: 9.980112e-02	ci left: 4.741197e-04	ci right 5.242351e-04	k: 1541	n:3090000
PIAS1   3090000 perm   4362 sec   (708 perm/sec)   p_kst 4.987055e-04   p_cons 1.052557e-02   p_joint 4.987055e-04

Outputting figure to mutsig2_images.part000000000130/PIAS1.2_2012_3090000_0.00049871_0.010526_0.00049871.png
                gene_name: PIAS1
               theta_stop: 0.100 
                    nperm: 3090000 
                     p_ks: 0.00050 
        ci_ks_bounds_left: 0.00047 
       ci_ks_bounds_right: 0.00052 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00047 
    ci_joint_bounds_right: 0.00052 

Current progress: 98 percent done.
PIGC
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000130
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 130 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 4422311: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000131> was used as the working directory.
Started at Wed Oct 24 18:02:46 2012
Results reported at Wed Oct 24 18:20:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000131.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000131.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 131  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000131.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1108.01 sec.
    Max Memory :      5355 MB
    Max Swap   :      7802 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
131
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 131
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 131: processing genes 11762 - 11852
Calculating significance of each gene.
Using projection method.
11762	PIGH	1
11763	PIGK	4.967629e-01
11764	PIGL	3.258311e-01
11765	PIGM	2.329120e-01
11766	PIGN	1
11767	PIGO	7.512701e-01
11768	PIGP	2.743128e-01
11769	PIGQ	9.650847e-01
11770	PIGR	8.185713e-01
11771	PIGS	9.265593e-01
11772	PIGT	1
11773	PIGU	1
11774	PIGV	4.543405e-01
11775	PIGW	8.796965e-01
11776	PIGX	3.578251e-02
11777	PIGY	1
11778	PIGZ	9.741454e-01
11779	PIH1D1	9.123375e-01
11780	PIH1D2	7.459629e-01
11781	PIK3AP1	9.877974e-01
11782	PIK3C2A	6.693301e-01
11783	PIK3C2B	1
11784	PIK3C2G	2.967483e-01
11785	PIK3C3	1
11786	PIK3CA	4.064583e-02
11787	PIK3CB	5.013220e-01
11788	PIK3CD	9.975011e-01
11789	PIK3CG	9.696957e-01
11790	PIK3IP1	1
11791	PIK3R1	7.185605e-01
11792	PIK3R2	1
11793	PIK3R3	6.074773e-01
11794	PIK3R4	9.931136e-01
11795	PIK3R5	7.291695e-01
11796	PIK3R6	3.471600e-01
11797	PIKFYVE	9.994969e-01
11798	PILRA	3.441247e-01
11799	PILRB	1.807752e-02
11800	PIM1	1
11801	PIM2	1.121163e-01
11802	PIM3	5.678059e-01
11803	PIN1	1
11804	PIN4	1
11805	PINK1	1
11806	PINX1	4.177397e-01
11807	PION	9.842533e-01
11808	PIP	3.568897e-04
In gene PIP4K2A the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 1261    n = 1	mu =   3.01e-07
11809	PIP4K2A	7.343707e-02
11810	PIP4K2B	7.743857e-01
11811	PIP4K2C	1
11812	PIP5K1A	2.159807e-01
11813	PIP5K1B	2.415969e-01
11814	PIP5K1C	7.564216e-01
11815	PIP5KL1	3.512450e-01
11816	PIPOX	1
11817	PIR	3.299937e-01
11818	PIRT	2.397793e-01
11819	PISD	1
11820	PITPNA	1
11821	PITPNB	1
11822	PITPNC1	1.740225e-01
11823	PITPNM1	9.952563e-01
11824	PITPNM2	9.274344e-01
11825	PITPNM3	9.616098e-01
11826	PITRM1	9.887351e-01
11827	PITX1	1.136704e-01
11828	PITX2	3.098228e-01
11829	PITX3	1
11830	PIWIL1	1.261211e-01
11831	PIWIL2	7.468972e-01
11832	PIWIL3	3.158920e-01
11833	PIWIL4	1
11834	PJA1	2.047247e-03
11835	PJA2	6.491989e-01
11836	PKD1	1.000000e+00
11837	PKD1L1	9.998446e-01
In gene PKD1L2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 6736    n = 1	mu =   9.71e-07
11838	PKD1L2	9.997355e-01
11839	PKD2	9.899580e-01
11840	PKD2L1	7.942109e-01
11841	PKD2L2	3.911096e-01
11842	PKDCC	8.945779e-01
11843	PKDREJ	1
11844	PKHD1	9.999942e-01
11845	PKHD1L1	1
11846	PKIA	2.545395e-01
11847	PKIB	1.903397e-01
11848	PKIG	1
11849	PKLR	1.543356e-02
11850	PKM2	7.432070e-01
11851	PKMYT1	8.929456e-01
11852	PKN1	9.815076e-01
Done

Running MutSig 2:
Scatter job 131: processing genes 11762 - 11852
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PKHD1L1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
Cons ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
KS ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
PKHD1L1   10000 perm   4 sec   (2270 perm/sec)   p_kst 2.986000e-01   p_cons 4.778000e-01   p_joint 4.857000e-01

Outputting figure to mutsig2_images.part000000000131/PKHD1L1.56_13044_10000_0.2986_0.4778_0.4857.png
                gene_name: PKHD1L1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 2 percent done.
PKHD1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
Cons ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
KS ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
PKHD1   10000 perm   4 sec   (2581 perm/sec)   p_kst 1.149000e-01   p_cons 3.765000e-01   p_joint 1.801000e-01

Joint ci ratio: 6.285674e-02	ci left: 1.576584e-01	ci right 1.679398e-01	k: 3255	n:20000
Cons ci ratio: 3.612686e-02	ci left: 3.638012e-01	ci right 3.772365e-01	k: 7410	n:20000
KS ci ratio: 7.912587e-02	ci left: 1.049587e-01	ci right 1.136553e-01	k: 2185	n:20000
PKHD1   20000 perm   8 sec   (2411 perm/sec)   p_kst 1.092500e-01   p_cons 3.705000e-01   p_joint 1.627500e-01

Outputting figure to mutsig2_images.part000000000131/PKHD1.40_12528_20000_0.10925_0.3705_0.16275.png
                gene_name: PKHD1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 3 percent done.
PKD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
KS ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
PKD1L1   10000 perm   3 sec   (3304 perm/sec)   p_kst 9.717000e-01   p_cons 6.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKD1L1.26_8778_10000_0.9717_0.6184_1.png
                gene_name: PKD1L1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
PKD1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
KS ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
PKD1L2   10000 perm   3 sec   (3474 perm/sec)   p_kst 2.116000e-01   p_cons 4.604000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000131/PKD1L2.19_7621_10000_0.2116_0.4604_0.2488.png
                gene_name: PKD1L2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 7 percent done.
PIKFYVE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
Cons ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
KS ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
PIKFYVE   10000 perm   3 sec   (3657 perm/sec)   p_kst 8.371000e-01   p_cons 1.583000e-01   p_joint 6.062000e-01

Outputting figure to mutsig2_images.part000000000131/PIKFYVE.17_6472_10000_0.8371_0.1583_0.6062.png
                gene_name: PIKFYVE
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
PIK3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
PIK3CA   10000 perm   2 sec   (4959 perm/sec)   p_kst 1.027000e-01   p_cons 9.770000e-02   p_joint 5.110000e-02

Joint ci ratio: 1.282129e-01	ci left: 4.178055e-02	ci right 4.755277e-02	k: 892	n:20000
Cons ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
KS ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
PIK3CA   20000 perm   4 sec   (4493 perm/sec)   p_kst 1.023000e-01   p_cons 9.865000e-02   p_joint 4.460000e-02

Joint ci ratio: 1.194862e-01	ci left: 3.256037e-02	ci right 3.673038e-02	k: 1038	n:30000
Cons ci ratio: 7.337702e-02	ci left: 8.367034e-02	ci right 9.007659e-02	k: 2605	n:30000
KS ci ratio: 6.642892e-02	ci left: 1.005347e-01	ci right 1.074756e-01	k: 3119	n:30000
PIK3CA   30000 perm   7 sec   (4299 perm/sec)   p_kst 1.039667e-01   p_cons 8.683333e-02   p_joint 3.460000e-02

Joint ci ratio: 9.106224e-02	ci left: 4.225531e-02	ci right 4.631118e-02	k: 1770	n:40000
Cons ci ratio: 6.334382e-02	ci left: 8.460057e-02	ci right 9.015950e-02	k: 3494	n:40000
KS ci ratio: 5.717714e-02	ci left: 1.021355e-01	ci right 1.081720e-01	k: 4205	n:40000
PIK3CA   40000 perm   10 sec   (4189 perm/sec)   p_kst 1.051250e-01   p_cons 8.735000e-02   p_joint 4.425000e-02

Outputting figure to mutsig2_images.part000000000131/PIK3CA.11_3287_40000_0.10512_0.08735_0.04425.png
                gene_name: PIK3CA
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 10 percent done.
PIK3CG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
KS ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
PIK3CG   10000 perm   2 sec   (4473 perm/sec)   p_kst 7.954000e-01   p_cons 9.129000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3CG.11_3349_10000_0.7954_0.9129_1.png
                gene_name: PIK3CG
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
PIWIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
PIWIL1   10000 perm   2 sec   (4912 perm/sec)   p_kst 1.245000e-01   p_cons 9.334000e-01   p_joint 2.594000e-01

Joint ci ratio: 4.848148e-02	ci left: 2.403410e-01	ci right 2.523329e-01	k: 4926	n:20000
Cons ci ratio: 7.376352e-03	ci left: 9.303681e-01	ci right 9.373051e-01	k: 18678	n:20000
KS ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
PIWIL1   20000 perm   4 sec   (4475 perm/sec)   p_kst 1.193500e-01   p_cons 9.339000e-01   p_joint 2.463000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL1.11_2666_20000_0.11935_0.9339_0.2463.png
                gene_name: PIWIL1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 13 percent done.
PKLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
PKLR   10000 perm   2 sec   (5144 perm/sec)   p_kst 4.829000e-01   p_cons 4.330000e-02   p_joint 1.354000e-01

Joint ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
Cons ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
KS ci ratio: 2.873858e-02	ci left: 4.749531e-01	ci right 4.888522e-01	k: 9638	n:20000
PKLR   20000 perm   4 sec   (4661 perm/sec)   p_kst 4.819000e-01   p_cons 4.205000e-02   p_joint 1.287000e-01

Joint ci ratio: 6.292746e-02	ci left: 1.109176e-01	ci right 1.181572e-01	k: 3435	n:30000
Cons ci ratio: 1.072466e-01	ci left: 4.034245e-02	ci right 4.494666e-02	k: 1278	n:30000
KS ci ratio: 2.346713e-02	ci left: 4.761978e-01	ci right 4.875391e-01	k: 14456	n:30000
PKLR   30000 perm   7 sec   (4463 perm/sec)   p_kst 4.818667e-01   p_cons 4.260000e-02   p_joint 1.145000e-01

Joint ci ratio: 5.329762e-02	ci left: 1.159410e-01	ci right 1.223144e-01	k: 4764	n:40000
Cons ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
KS ci ratio: 2.104808e-02	ci left: 4.595028e-01	ci right 4.693024e-01	k: 18576	n:40000
PKLR   40000 perm   9 sec   (4339 perm/sec)   p_kst 4.644000e-01   p_cons 4.185000e-02   p_joint 1.191000e-01

Outputting figure to mutsig2_images.part000000000131/PKLR.11_1780_40000_0.4644_0.04185_0.1191.png
                gene_name: PKLR
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 15 percent done.
PIK3C2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
PIK3C2A   10000 perm   2 sec   (4264 perm/sec)   p_kst 7.577000e-01   p_cons 3.049000e-01   p_joint 7.038000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C2A.10_5189_10000_0.7577_0.3049_0.7038.png
                gene_name: PIK3C2A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 16 percent done.
PJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
PJA1   10000 perm   2 sec   (5332 perm/sec)   p_kst 2.300000e-03   p_cons 4.706000e-01   p_joint 1.250000e-02

Joint ci ratio: 3.243481e-01	ci left: 6.075351e-03	ci right 8.471257e-03	k: 144	n:20000
Cons ci ratio: 2.937629e-02	ci left: 4.640118e-01	ci right 4.778966e-01	k: 9419	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
PJA1   20000 perm   4 sec   (4583 perm/sec)   p_kst 2.350000e-03   p_cons 4.709500e-01   p_joint 7.200000e-03

Joint ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
Cons ci ratio: 2.435933e-02	ci left: 4.576111e-01	ci right 4.689293e-01	k: 13898	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
PJA1   30000 perm   7 sec   (4462 perm/sec)   p_kst 2.533333e-03   p_cons 4.632667e-01   p_joint 5.100000e-03

Joint ci ratio: 2.050937e-01	ci left: 8.121507e-03	ci right 1.000080e-02	k: 361	n:40000
Cons ci ratio: 2.118716e-02	ci left: 4.562304e-01	ci right 4.660253e-01	k: 18445	n:40000
KS ci ratio: 3.895570e-01	ci left: 2.034549e-03	ci right 3.039847e-03	k: 100	n:40000
PJA1   40000 perm   9 sec   (4364 perm/sec)   p_kst 2.500000e-03   p_cons 4.611250e-01   p_joint 9.025000e-03

Joint ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
Cons ci ratio: 1.898890e-02	ci left: 4.557438e-01	ci right 4.645009e-01	k: 23006	n:50000
KS ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
PJA1   50000 perm   12 sec   (4276 perm/sec)   p_kst 2.620000e-03   p_cons 4.601200e-01   p_joint 7.480000e-03

Joint ci ratio: 1.946106e-01	ci left: 6.062863e-03	ci right 7.385528e-03	k: 402	n:60000
Cons ci ratio: 1.730790e-02	ci left: 4.568885e-01	ci right 4.648820e-01	k: 27653	n:60000
KS ci ratio: 3.047492e-01	ci left: 2.331456e-03	ci right 3.184439e-03	k: 164	n:60000
PJA1   60000 perm   14 sec   (4204 perm/sec)   p_kst 2.733333e-03   p_cons 4.608833e-01   p_joint 6.700000e-03

Joint ci ratio: 1.904724e-01	ci left: 5.441317e-03	ci right 6.600205e-03	k: 420	n:70000
Cons ci ratio: 1.563650e-02	ci left: 4.693669e-01	ci right 4.767782e-01	k: 33115	n:70000
KS ci ratio: 2.803238e-01	ci left: 2.395577e-03	ci right 3.189388e-03	k: 194	n:70000
PJA1   70000 perm   17 sec   (4135 perm/sec)   p_kst 2.771429e-03   p_cons 4.730714e-01   p_joint 6.000000e-03

Joint ci ratio: 1.800905e-01	ci left: 5.357158e-03	ci right 6.429151e-03	k: 470	n:80000
Cons ci ratio: 1.464489e-02	ci left: 4.689853e-01	ci right 4.759167e-01	k: 37796	n:80000
KS ci ratio: 2.669806e-01	ci left: 2.328974e-03	ci right 3.057836e-03	k: 214	n:80000
PJA1   80000 perm   20 sec   (4073 perm/sec)   p_kst 2.675000e-03   p_cons 4.724500e-01   p_joint 5.875000e-03

Joint ci ratio: 1.823023e-01	ci left: 4.645081e-03	ci right 5.587250e-03	k: 459	n:90000
Cons ci ratio: 1.383093e-02	ci left: 4.683341e-01	ci right 4.748678e-01	k: 42444	n:90000
KS ci ratio: 2.537583e-01	ci left: 2.309082e-03	ci right 2.990272e-03	k: 237	n:90000
PJA1   90000 perm   22 sec   (4010 perm/sec)   p_kst 2.633333e-03   p_cons 4.716000e-01   p_joint 5.100000e-03

Joint ci ratio: 1.922573e-01	ci left: 3.741952e-03	ci right 4.547227e-03	k: 413	n:100000
Cons ci ratio: 1.310410e-02	ci left: 4.691516e-01	ci right 4.753500e-01	k: 47225	n:100000
KS ci ratio: 2.423238e-01	ci left: 2.293881e-03	ci right 2.935511e-03	k: 260	n:100000
PJA1   100000 perm   25 sec   (3948 perm/sec)   p_kst 2.600000e-03   p_cons 4.722500e-01   p_joint 4.130000e-03

Joint ci ratio: 1.941861e-01	ci left: 3.332496e-03	ci right 4.057695e-03	k: 405	n:110000
Cons ci ratio: 1.248620e-02	ci left: 4.696186e-01	ci right 4.755283e-01	k: 51983	n:110000
KS ci ratio: 2.271532e-01	ci left: 2.393404e-03	ci right 3.015095e-03	k: 296	n:110000
PJA1   110000 perm   28 sec   (3886 perm/sec)   p_kst 2.690909e-03   p_cons 4.725727e-01   p_joint 3.681818e-03

Joint ci ratio: 2.032006e-01	ci left: 2.777541e-03	ci right 3.413515e-03	k: 370	n:120000
Cons ci ratio: 1.194999e-02	ci left: 4.699384e-01	ci right 4.755962e-01	k: 56732	n:120000
KS ci ratio: 2.178200e-01	ci left: 2.398551e-03	ci right 2.992555e-03	k: 322	n:120000
PJA1   120000 perm   31 sec   (3828 perm/sec)   p_kst 2.683333e-03   p_cons 4.727667e-01   p_joint 3.083333e-03

Joint ci ratio: 1.419646e-01	ci left: 5.416681e-03	ci right 6.251747e-03	k: 757	n:130000
Cons ci ratio: 1.148964e-02	ci left: 4.696830e-01	ci right 4.751183e-01	k: 61412	n:130000
KS ci ratio: 2.092498e-01	ci left: 2.410637e-03	ci right 2.981137e-03	k: 349	n:130000
PJA1   130000 perm   35 sec   (3745 perm/sec)   p_kst 2.684615e-03   p_cons 4.724000e-01   p_joint 5.823077e-03

Joint ci ratio: 1.460192e-01	ci left: 4.747346e-03	ci right 5.501946e-03	k: 716	n:140000
Cons ci ratio: 1.107107e-02	ci left: 4.698105e-01	ci right 4.750478e-01	k: 66140	n:140000
KS ci ratio: 2.021559e-01	ci left: 2.407823e-03	ci right 2.955955e-03	k: 374	n:140000
PJA1   140000 perm   38 sec   (3688 perm/sec)   p_kst 2.671429e-03   p_cons 4.724286e-01   p_joint 5.114286e-03

Joint ci ratio: 1.423034e-01	ci left: 4.675040e-03	ci right 5.397630e-03	k: 754	n:150000
Cons ci ratio: 1.069443e-02	ci left: 4.699574e-01	ci right 4.750170e-01	k: 70873	n:150000
KS ci ratio: 1.945226e-01	ci left: 2.437376e-03	ci right 2.968803e-03	k: 404	n:150000
PJA1   150000 perm   41 sec   (3629 perm/sec)   p_kst 2.693333e-03   p_cons 4.724867e-01   p_joint 5.026667e-03

Joint ci ratio: 1.425158e-01	ci left: 4.370746e-03	ci right 5.047394e-03	k: 752	n:160000
Cons ci ratio: 1.061352e-02	ci left: 4.577617e-01	ci right 4.626523e-01	k: 73633	n:160000
KS ci ratio: 1.890049e-01	ci left: 2.427838e-03	ci right 2.940447e-03	k: 428	n:160000
PJA1   160000 perm   45 sec   (3579 perm/sec)   p_kst 2.675000e-03   p_cons 4.602062e-01   p_joint 4.700000e-03

Joint ci ratio: 1.374058e-01	ci left: 4.437209e-03	ci right 5.097502e-03	k: 809	n:170000
Cons ci ratio: 1.029152e-02	ci left: 4.580813e-01	ci right 4.628259e-01	k: 78277	n:170000
KS ci ratio: 1.835258e-01	ci left: 2.430835e-03	ci right 2.927543e-03	k: 454	n:170000
PJA1   170000 perm   48 sec   (3533 perm/sec)   p_kst 2.670588e-03   p_cons 4.604529e-01   p_joint 4.758824e-03

Joint ci ratio: 1.371692e-01	ci left: 4.206757e-03	ci right 4.831589e-03	k: 812	n:180000
Cons ci ratio: 9.993909e-03	ci left: 4.585285e-01	ci right 4.631395e-01	k: 82950	n:180000
KS ci ratio: 1.764851e-01	ci left: 2.492092e-03	ci right 2.979698e-03	k: 491	n:180000
PJA1   180000 perm   52 sec   (3488 perm/sec)   p_kst 2.727778e-03   p_cons 4.608333e-01   p_joint 4.511111e-03

Joint ci ratio: 1.338375e-01	ci left: 4.193821e-03	ci right 4.800397e-03	k: 853	n:190000
Cons ci ratio: 9.723173e-03	ci left: 4.588039e-01	ci right 4.632920e-01	k: 87599	n:190000
KS ci ratio: 1.725011e-01	ci left: 2.476694e-03	ci right 2.949208e-03	k: 514	n:190000
PJA1   190000 perm   55 sec   (3443 perm/sec)   p_kst 2.705263e-03   p_cons 4.610474e-01   p_joint 4.489474e-03

Joint ci ratio: 1.330724e-01	ci left: 4.032438e-03	ci right 4.612073e-03	k: 863	n:200000
Cons ci ratio: 9.487425e-03	ci left: 4.583136e-01	ci right 4.626875e-01	k: 92100	n:200000
KS ci ratio: 1.686183e-01	ci left: 2.467736e-03	ci right 2.926867e-03	k: 538	n:200000
PJA1   200000 perm   59 sec   (3399 perm/sec)   p_kst 2.690000e-03   p_cons 4.605000e-01   p_joint 4.315000e-03

Joint ci ratio: 1.383284e-01	ci left: 3.545936e-03	ci right 4.077429e-03	k: 799	n:210000
Cons ci ratio: 9.264286e-03	ci left: 4.580712e-01	ci right 4.623394e-01	k: 96643	n:210000
KS ci ratio: 1.646932e-01	ci left: 2.468870e-03	ci right 2.916461e-03	k: 564	n:210000
PJA1   210000 perm   63 sec   (3357 perm/sec)   p_kst 2.685714e-03   p_cons 4.602048e-01   p_joint 3.804762e-03

Joint ci ratio: 1.112772e-01	ci left: 5.296850e-03	ci right 5.925375e-03	k: 1233	n:220000
Cons ci ratio: 9.060821e-03	ci left: 4.575976e-01	ci right 4.617671e-01	k: 101130	n:220000
KS ci ratio: 1.610302e-01	ci left: 2.470014e-03	ci right 2.906889e-03	k: 590	n:220000
PJA1   220000 perm   66 sec   (3315 perm/sec)   p_kst 2.681818e-03   p_cons 4.596818e-01   p_joint 5.604545e-03

Joint ci ratio: 1.131495e-01	ci left: 4.897463e-03	ci right 5.489025e-03	k: 1193	n:230000
Cons ci ratio: 8.859088e-03	ci left: 4.577876e-01	ci right 4.618656e-01	k: 105760	n:230000
KS ci ratio: 1.592926e-01	ci left: 2.416873e-03	ci right 2.839295e-03	k: 603	n:230000
PJA1   230000 perm   70 sec   (3276 perm/sec)   p_kst 2.621739e-03   p_cons 4.598261e-01   p_joint 5.186957e-03

Joint ci ratio: 1.113941e-01	ci left: 4.847282e-03	ci right 5.423102e-03	k: 1231	n:240000
Cons ci ratio: 8.672436e-03	ci left: 4.578378e-01	ci right 4.618298e-01	k: 110360	n:240000
KS ci ratio: 1.556001e-01	ci left: 2.432245e-03	ci right 2.846579e-03	k: 632	n:240000
PJA1   240000 perm   74 sec   (3236 perm/sec)   p_kst 2.633333e-03   p_cons 4.598333e-01   p_joint 5.129167e-03

Joint ci ratio: 1.125591e-01	ci left: 4.556153e-03	ci right 5.103424e-03	k: 1206	n:250000
Cons ci ratio: 8.494233e-03	ci left: 4.580528e-01	ci right 4.619641e-01	k: 115002	n:250000
KS ci ratio: 1.541503e-01	ci left: 2.381090e-03	ci right 2.782581e-03	k: 644	n:250000
PJA1   250000 perm   78 sec   (3192 perm/sec)   p_kst 2.576000e-03   p_cons 4.600080e-01   p_joint 4.824000e-03

Joint ci ratio: 1.142458e-01	ci left: 4.250080e-03	ci right 4.768752e-03	k: 1171	n:260000
Cons ci ratio: 8.328901e-03	ci left: 4.581135e-01	ci right 4.619489e-01	k: 119608	n:260000
KS ci ratio: 1.523917e-01	ci left: 2.344986e-03	ci right 2.735466e-03	k: 659	n:260000
PJA1   260000 perm   82 sec   (3157 perm/sec)   p_kst 2.534615e-03   p_cons 4.600308e-01   p_joint 4.503846e-03

Joint ci ratio: 1.060669e-01	ci left: 4.766269e-03	ci right 5.303699e-03	k: 1358	n:270000
Cons ci ratio: 8.174263e-03	ci left: 4.580853e-01	ci right 4.618489e-01	k: 124191	n:270000
KS ci ratio: 1.573771e-01	ci left: 2.112146e-03	ci right 2.476447e-03	k: 618	n:270000
PJA1   270000 perm   86 sec   (3123 perm/sec)   p_kst 2.288889e-03   p_cons 4.599667e-01   p_joint 5.029630e-03

Joint ci ratio: 1.040197e-01	ci left: 4.783838e-03	ci right 5.312201e-03	k: 1412	n:280000
Cons ci ratio: 8.031914e-03	ci left: 4.578134e-01	ci right 4.615089e-01	k: 128705	n:280000
KS ci ratio: 1.544118e-01	ci left: 2.119084e-03	ci right 2.477057e-03	k: 642	n:280000
PJA1   280000 perm   91 sec   (3089 perm/sec)   p_kst 2.292857e-03   p_cons 4.596607e-01   p_joint 5.042857e-03

Joint ci ratio: 1.026153e-01	ci left: 4.749881e-03	ci right 5.266983e-03	k: 1451	n:290000
Cons ci ratio: 7.889185e-03	ci left: 4.580365e-01	ci right 4.616677e-01	k: 133357	n:290000
KS ci ratio: 1.527602e-01	ci left: 2.092430e-03	ci right 2.441774e-03	k: 656	n:290000
PJA1   290000 perm   95 sec   (3054 perm/sec)   p_kst 2.262069e-03   p_cons 4.598517e-01   p_joint 5.003448e-03

Joint ci ratio: 1.219326e-01	ci left: 3.223930e-03	ci right 3.645752e-03	k: 1029	n:300000
Cons ci ratio: 7.559921e-03	ci left: 4.708454e-01	ci right 4.744218e-01	k: 141790	n:300000
KS ci ratio: 1.503762e-01	ci left: 2.090027e-03	ci right 2.433035e-03	k: 677	n:300000
PJA1   300000 perm   99 sec   (3021 perm/sec)   p_kst 2.256667e-03   p_cons 4.726333e-01   p_joint 3.430000e-03

Joint ci ratio: 1.205958e-01	ci left: 3.191872e-03	ci right 3.604595e-03	k: 1052	n:310000
Cons ci ratio: 7.433589e-03	ci left: 4.711024e-01	ci right 4.746207e-01	k: 146587	n:310000
KS ci ratio: 1.482068e-01	ci left: 2.084713e-03	ci right 2.421475e-03	k: 697	n:310000
PJA1   310000 perm   104 sec   (2990 perm/sec)   p_kst 2.248387e-03   p_cons 4.728613e-01   p_joint 3.393548e-03

Joint ci ratio: 1.183675e-01	ci left: 3.213392e-03	ci right 3.620683e-03	k: 1092	n:320000
Cons ci ratio: 7.315125e-03	ci left: 4.712251e-01	ci right 4.746879e-01	k: 151346	n:320000
KS ci ratio: 1.453195e-01	ci left: 2.103854e-03	ci right 2.436512e-03	k: 725	n:320000
PJA1   320000 perm   108 sec   (2959 perm/sec)   p_kst 2.265625e-03   p_cons 4.729563e-01   p_joint 3.412500e-03

Joint ci ratio: 1.056870e-01	ci left: 3.932036e-03	ci right 4.373711e-03	k: 1369	n:330000
Cons ci ratio: 7.206178e-03	ci left: 4.710620e-01	ci right 4.744718e-01	k: 156013	n:330000
KS ci ratio: 1.425946e-01	ci left: 2.121895e-03	ci right 2.450579e-03	k: 753	n:330000
PJA1   330000 perm   113 sec   (2928 perm/sec)   p_kst 2.281818e-03   p_cons 4.727667e-01   p_joint 4.148485e-03

Joint ci ratio: 1.071562e-01	ci left: 3.710438e-03	ci right 4.133380e-03	k: 1332	n:340000
Cons ci ratio: 7.101579e-03	ci left: 4.709353e-01	ci right 4.742945e-01	k: 160689	n:340000
KS ci ratio: 1.405589e-01	ci left: 2.121900e-03	ci right 2.445500e-03	k: 775	n:340000
PJA1   340000 perm   118 sec   (2889 perm/sec)   p_kst 2.279412e-03   p_cons 4.726147e-01   p_joint 3.917647e-03

Joint ci ratio: 1.098414e-01	ci left: 3.426503e-03	ci right 3.827499e-03	k: 1268	n:350000
Cons ci ratio: 6.997675e-03	ci left: 4.710819e-01	ci right 4.743928e-01	k: 165458	n:350000
KS ci ratio: 1.382611e-01	ci left: 2.132970e-03	ci right 2.452503e-03	k: 801	n:350000
PJA1   350000 perm   122 sec   (2860 perm/sec)   p_kst 2.288571e-03   p_cons 4.727371e-01   p_joint 3.622857e-03

Joint ci ratio: 1.088190e-01	ci left: 3.396163e-03	ci right 3.789672e-03	k: 1292	n:360000
Cons ci ratio: 6.899777e-03	ci left: 4.711069e-01	ci right 4.743714e-01	k: 170186	n:360000
KS ci ratio: 1.363202e-01	ci left: 2.135415e-03	ci right 2.450459e-03	k: 824	n:360000
PJA1   360000 perm   127 sec   (2832 perm/sec)   p_kst 2.288889e-03   p_cons 4.727389e-01   p_joint 3.588889e-03

Joint ci ratio: 1.066924e-01	ci left: 3.441132e-03	ci right 3.831570e-03	k: 1344	n:370000
Cons ci ratio: 6.809199e-03	ci left: 4.708875e-01	ci right 4.741075e-01	k: 174824	n:370000
KS ci ratio: 1.334375e-01	ci left: 2.171718e-03	ci right 2.484806e-03	k: 860	n:370000
PJA1   370000 perm   132 sec   (2804 perm/sec)   p_kst 2.324324e-03   p_cons 4.724973e-01   p_joint 3.632432e-03

Joint ci ratio: 1.063411e-01	ci left: 3.373622e-03	ci right 3.755062e-03	k: 1353	n:380000
Cons ci ratio: 6.718403e-03	ci left: 4.709537e-01	ci right 4.741310e-01	k: 179566	n:380000
KS ci ratio: 1.318398e-01	ci left: 2.167997e-03	ci right 2.476512e-03	k: 881	n:380000
PJA1   380000 perm   137 sec   (2777 perm/sec)   p_kst 2.318421e-03   p_cons 4.725421e-01   p_joint 3.560526e-03

Joint ci ratio: 9.431082e-02	ci left: 4.202196e-03	ci right 4.620605e-03	k: 1719	n:390000
Cons ci ratio: 6.630191e-03	ci left: 4.710885e-01	ci right 4.742248e-01	k: 184336	n:390000
KS ci ratio: 1.302259e-01	ci left: 2.166968e-03	ci right 2.471271e-03	k: 903	n:390000
PJA1   390000 perm   142 sec   (2751 perm/sec)   p_kst 2.315385e-03   p_cons 4.726564e-01   p_joint 4.407692e-03

Joint ci ratio: 9.326004e-02	ci left: 4.192353e-03	ci right 4.604877e-03	k: 1758	n:400000
Cons ci ratio: 6.548614e-03	ci left: 4.709693e-01	ci right 4.740661e-01	k: 189007	n:400000
KS ci ratio: 1.286003e-01	ci left: 2.168433e-03	ci right 2.468849e-03	k: 926	n:400000
PJA1   400000 perm   147 sec   (2723 perm/sec)   p_kst 2.315000e-03   p_cons 4.725175e-01   p_joint 4.395000e-03

Joint ci ratio: 9.260644e-02	ci left: 4.149655e-03	ci right 4.554960e-03	k: 1783	n:410000
Cons ci ratio: 6.468488e-03	ci left: 4.709708e-01	ci right 4.740296e-01	k: 193725	n:410000
KS ci ratio: 1.267668e-01	ci left: 2.179295e-03	ci right 2.476589e-03	k: 953	n:410000
PJA1   410000 perm   152 sec   (2696 perm/sec)   p_kst 2.324390e-03   p_cons 4.725000e-01   p_joint 4.348780e-03

Joint ci ratio: 9.151023e-02	ci left: 4.150877e-03	ci right 4.551246e-03	k: 1826	n:420000
Cons ci ratio: 6.389981e-03	ci left: 4.710701e-01	ci right 4.740922e-01	k: 198484	n:420000
KS ci ratio: 1.255236e-01	ci left: 2.171217e-03	ci right 2.464288e-03	k: 972	n:420000
PJA1   420000 perm   157 sec   (2670 perm/sec)   p_kst 2.314286e-03   p_cons 4.725810e-01   p_joint 4.347619e-03

Joint ci ratio: 9.235629e-02	ci left: 3.979349e-03	ci right 4.366914e-03	k: 1793	n:430000
Cons ci ratio: 6.315914e-03	ci left: 4.710347e-01	ci right 4.740215e-01	k: 203187	n:430000
KS ci ratio: 1.244421e-01	ci left: 2.159022e-03	ci right 2.447750e-03	k: 989	n:430000
PJA1   430000 perm   163 sec   (2636 perm/sec)   p_kst 2.300000e-03   p_cons 4.725279e-01   p_joint 4.169767e-03

Joint ci ratio: 9.262025e-02	ci left: 3.866698e-03	ci right 4.244425e-03	k: 1783	n:440000
Cons ci ratio: 6.244479e-03	ci left: 4.709921e-01	ci right 4.739446e-01	k: 207886	n:440000
KS ci ratio: 1.233881e-01	ci left: 2.147391e-03	ci right 2.431954e-03	k: 1006	n:440000
PJA1   440000 perm   169 sec   (2611 perm/sec)   p_kst 2.286364e-03   p_cons 4.724682e-01   p_joint 4.052273e-03

Joint ci ratio: 9.338960e-02	ci left: 3.717812e-03	ci right 4.084176e-03	k: 1754	n:450000
Cons ci ratio: 6.174615e-03	ci left: 4.710160e-01	ci right 4.739355e-01	k: 212614	n:450000
KS ci ratio: 1.224803e-01	ci left: 2.131978e-03	ci right 2.412270e-03	k: 1021	n:450000
PJA1   450000 perm   174 sec   (2585 perm/sec)   p_kst 2.268889e-03   p_cons 4.724756e-01   p_joint 3.897778e-03

Joint ci ratio: 9.244655e-02	ci left: 3.713432e-03	ci right 4.075470e-03	k: 1790	n:460000
Cons ci ratio: 6.107764e-03	ci left: 4.709803e-01	ci right 4.738679e-01	k: 217315	n:460000
KS ci ratio: 1.213580e-01	ci left: 2.125675e-03	ci right 2.402393e-03	k: 1040	n:460000
PJA1   460000 perm   180 sec   (2561 perm/sec)   p_kst 2.260870e-03   p_cons 4.724239e-01   p_joint 3.891304e-03

Joint ci ratio: 9.125612e-02	ci left: 3.732127e-03	ci right 4.091052e-03	k: 1837	n:470000
Cons ci ratio: 6.042213e-03	ci left: 4.710144e-01	ci right 4.738711e-01	k: 222048	n:470000
KS ci ratio: 1.197013e-01	ci left: 2.140291e-03	ci right 2.414839e-03	k: 1069	n:470000
PJA1   470000 perm   185 sec   (2537 perm/sec)   p_kst 2.274468e-03   p_cons 4.724426e-01   p_joint 3.908511e-03

Joint ci ratio: 9.056992e-02	ci left: 3.711380e-03	ci right 4.065483e-03	k: 1865	n:480000
Cons ci ratio: 5.977479e-03	ci left: 4.711514e-01	ci right 4.739781e-01	k: 226831	n:480000
KS ci ratio: 1.183809e-01	ci left: 2.144213e-03	ci right 2.416017e-03	k: 1093	n:480000
PJA1   480000 perm   191 sec   (2515 perm/sec)   p_kst 2.277083e-03   p_cons 4.725646e-01   p_joint 3.885417e-03

Joint ci ratio: 9.035506e-02	ci left: 3.653584e-03	ci right 4.001302e-03	k: 1874	n:490000
Cons ci ratio: 5.917373e-03	ci left: 4.710646e-01	ci right 4.738623e-01	k: 231507	n:490000
KS ci ratio: 1.174724e-01	ci left: 2.134123e-03	ci right 2.402428e-03	k: 1110	n:490000
PJA1   490000 perm   197 sec   (2493 perm/sec)   p_kst 2.265306e-03   p_cons 4.724633e-01   p_joint 3.824490e-03

Joint ci ratio: 9.002181e-02	ci left: 3.607877e-03	ci right 3.949912e-03	k: 1888	n:500000
Cons ci ratio: 5.859067e-03	ci left: 4.709794e-01	ci right 4.737489e-01	k: 236182	n:500000
KS ci ratio: 1.165845e-01	ci left: 2.124445e-03	ci right 2.389375e-03	k: 1127	n:500000
PJA1   500000 perm   203 sec   (2468 perm/sec)   p_kst 2.254000e-03   p_cons 4.723640e-01   p_joint 3.776000e-03

Joint ci ratio: 9.002515e-02	ci left: 3.537129e-03	ci right 3.872470e-03	k: 1888	n:510000
Cons ci ratio: 5.801812e-03	ci left: 4.709526e-01	ci right 4.736948e-01	k: 240885	n:510000
KS ci ratio: 1.150635e-01	ci left: 2.139909e-03	ci right 2.403051e-03	k: 1157	n:510000
PJA1   510000 perm   209 sec   (2439 perm/sec)   p_kst 2.268627e-03   p_cons 4.723235e-01   p_joint 3.701961e-03

Joint ci ratio: 8.962451e-02	ci left: 3.501062e-03	ci right 3.831429e-03	k: 1905	n:520000
Cons ci ratio: 5.746071e-03	ci left: 4.709384e-01	ci right 4.736542e-01	k: 245594	n:520000
KS ci ratio: 1.143752e-01	ci left: 2.124907e-03	ci right 2.384535e-03	k: 1171	n:520000
PJA1   520000 perm   215 sec   (2416 perm/sec)   p_kst 2.251923e-03   p_cons 4.722962e-01   p_joint 3.663462e-03

Joint ci ratio: 8.918261e-02	ci left: 3.470049e-03	ci right 3.795791e-03	k: 1924	n:530000
Cons ci ratio: 5.690721e-03	ci left: 4.710287e-01	ci right 4.737187e-01	k: 250358	n:530000
KS ci ratio: 1.129852e-01	ci left: 2.137976e-03	ci right 2.395815e-03	k: 1200	n:530000
PJA1   530000 perm   221 sec   (2394 perm/sec)   p_kst 2.264151e-03   p_cons 4.723736e-01   p_joint 3.630189e-03

Joint ci ratio: 8.858722e-02	ci left: 3.452866e-03	ci right 3.774718e-03	k: 1950	n:540000
Cons ci ratio: 5.636751e-03	ci left: 4.711325e-01	ci right 4.737974e-01	k: 255131	n:540000
KS ci ratio: 1.122870e-01	ci left: 2.125379e-03	ci right 2.380009e-03	k: 1215	n:540000
PJA1   540000 perm   228 sec   (2373 perm/sec)   p_kst 2.250000e-03   p_cons 4.724648e-01   p_joint 3.611111e-03

Joint ci ratio: 8.852187e-02	ci left: 3.395416e-03	ci right 3.711667e-03	k: 1953	n:550000
Cons ci ratio: 5.584798e-03	ci left: 4.711871e-01	ci right 4.738277e-01	k: 259879	n:550000
KS ci ratio: 1.110603e-01	ci left: 2.134456e-03	ci right 2.387197e-03	k: 1242	n:550000
PJA1   550000 perm   234 sec   (2351 perm/sec)   p_kst 2.258182e-03   p_cons 4.725073e-01   p_joint 3.550909e-03

Joint ci ratio: 8.847926e-02	ci left: 3.338271e-03	ci right 3.649043e-03	k: 1955	n:560000
Cons ci ratio: 5.533898e-03	ci left: 4.712720e-01	ci right 4.738890e-01	k: 264645	n:560000
KS ci ratio: 1.099163e-01	ci left: 2.141486e-03	ci right 2.392279e-03	k: 1268	n:560000
PJA1   560000 perm   241 sec   (2328 perm/sec)   p_kst 2.264286e-03   p_cons 4.725804e-01   p_joint 3.491071e-03

Joint ci ratio: 8.859568e-02	ci left: 3.271123e-03	ci right 3.576064e-03	k: 1950	n:570000
Cons ci ratio: 5.486565e-03	ci left: 4.711541e-01	ci right 4.737479e-01	k: 269297	n:570000
KS ci ratio: 1.088491e-01	ci left: 2.146576e-03	ci right 2.395368e-03	k: 1293	n:570000
PJA1   570000 perm   247 sec   (2308 perm/sec)   p_kst 2.268421e-03   p_cons 4.724509e-01   p_joint 3.421053e-03

Joint ci ratio: 8.825852e-02	ci left: 3.240012e-03	ci right 3.540845e-03	k: 1965	n:580000
Cons ci ratio: 5.439052e-03	ci left: 4.711662e-01	ci right 4.737375e-01	k: 274022	n:580000
KS ci ratio: 1.081003e-01	ci left: 2.139758e-03	ci right 2.385945e-03	k: 1311	n:580000
PJA1   580000 perm   254 sec   (2287 perm/sec)   p_kst 2.260345e-03   p_cons 4.724517e-01   p_joint 3.387931e-03

Joint ci ratio: 8.821605e-02	ci left: 3.188408e-03	ci right 3.484299e-03	k: 1967	n:590000
Cons ci ratio: 5.392607e-03	ci left: 4.711915e-01	ci right 4.737410e-01	k: 278755	n:590000
KS ci ratio: 1.073668e-01	ci left: 2.133177e-03	ci right 2.376836e-03	k: 1329	n:590000
PJA1   590000 perm   260 sec   (2268 perm/sec)   p_kst 2.252542e-03   p_cons 4.724661e-01   p_joint 3.333898e-03

Joint ci ratio: 8.792762e-02	ci left: 3.156455e-03	ci right 3.448374e-03	k: 1980	n:600000
Cons ci ratio: 5.347170e-03	ci left: 4.712311e-01	ci right 4.737592e-01	k: 283497	n:600000
KS ci ratio: 1.066083e-01	ci left: 2.128443e-03	ci right 2.369736e-03	k: 1348	n:600000
PJA1   600000 perm   267 sec   (2249 perm/sec)   p_kst 2.246667e-03   p_cons 4.724950e-01   p_joint 3.300000e-03

Joint ci ratio: 8.786329e-02	ci left: 3.109516e-03	ci right 3.396873e-03	k: 1983	n:610000
Cons ci ratio: 5.303961e-03	ci left: 4.711662e-01	ci right 4.736734e-01	k: 288176	n:610000
KS ci ratio: 1.057109e-01	ci left: 2.130255e-03	ci right 2.369594e-03	k: 1371	n:610000
PJA1   610000 perm   274 sec   (2229 perm/sec)   p_kst 2.247541e-03   p_cons 4.724197e-01   p_joint 3.250820e-03

Joint ci ratio: 8.744653e-02	ci left: 3.089335e-03	ci right 3.373403e-03	k: 2002	n:620000
Cons ci ratio: 5.262140e-03	ci left: 4.710696e-01	ci right 4.735565e-01	k: 292834	n:620000
KS ci ratio: 1.043867e-01	ci left: 2.150865e-03	ci right 2.389307e-03	k: 1406	n:620000
PJA1   620000 perm   280 sec   (2211 perm/sec)   p_kst 2.267742e-03   p_cons 4.723129e-01   p_joint 3.229032e-03

Joint ci ratio: 8.134015e-02	ci left: 3.523574e-03	ci right 3.823876e-03	k: 2313	n:630000
Cons ci ratio: 5.219714e-03	ci left: 4.711269e-01	ci right 4.735940e-01	k: 297587	n:630000
KS ci ratio: 1.034351e-01	ci left: 2.156922e-03	ci right 2.393723e-03	k: 1432	n:630000
PJA1   630000 perm   287 sec   (2193 perm/sec)   p_kst 2.273016e-03   p_cons 4.723603e-01   p_joint 3.671429e-03

Joint ci ratio: 8.099197e-02	ci left: 3.499132e-03	ci right 3.796014e-03	k: 2333	n:640000
Cons ci ratio: 5.178671e-03	ci left: 4.711466e-01	ci right 4.735943e-01	k: 302317	n:640000
KS ci ratio: 1.027920e-01	ci left: 2.150620e-03	ci right 2.385172e-03	k: 1450	n:640000
PJA1   640000 perm   294 sec   (2175 perm/sec)   p_kst 2.265625e-03   p_cons 4.723703e-01   p_joint 3.645313e-03

Joint ci ratio: 8.028956e-02	ci left: 3.507105e-03	ci right 3.801962e-03	k: 2374	n:650000
Cons ci ratio: 5.138279e-03	ci left: 4.711949e-01	ci right 4.736238e-01	k: 307066	n:650000
KS ci ratio: 1.018139e-01	ci left: 2.159508e-03	ci right 2.392655e-03	k: 1478	n:650000
PJA1   650000 perm   301 sec   (2157 perm/sec)   p_kst 2.273846e-03   p_cons 4.724092e-01   p_joint 3.652308e-03

Joint ci ratio: 8.007215e-02	ci left: 3.473266e-03	ci right 3.764451e-03	k: 2387	n:660000
Cons ci ratio: 5.100570e-03	ci left: 4.710707e-01	ci right 4.734811e-01	k: 311702	n:660000
KS ci ratio: 1.009303e-01	ci left: 2.165184e-03	ci right 2.396795e-03	k: 1504	n:660000
PJA1   660000 perm   308 sec   (2140 perm/sec)   p_kst 2.278788e-03   p_cons 4.722758e-01   p_joint 3.616667e-03

Joint ci ratio: 7.950827e-02	ci left: 3.471160e-03	ci right 3.760024e-03	k: 2421	n:670000
Cons ci ratio: 5.062966e-03	ci left: 4.710204e-01	ci right 4.734127e-01	k: 316385	n:670000
KS ci ratio: 1.001022e-01	ci left: 2.169244e-03	ci right 2.399273e-03	k: 1529	n:670000
PJA1   670000 perm   316 sec   (2123 perm/sec)   p_kst 2.282090e-03   p_cons 4.722164e-01   p_joint 3.613433e-03

Joint ci ratio: 7.591400e-02	ci left: 3.757568e-03	ci right 4.055506e-03	k: 2655	n:680000
Cons ci ratio: 5.024921e-03	ci left: 4.710966e-01	ci right 4.734713e-01	k: 321153	n:680000
KS ci ratio: 9.935816e-02	ci left: 2.170323e-03	ci right 2.398656e-03	k: 1552	n:680000
PJA1   680000 perm   323 sec   (2107 perm/sec)   p_kst 2.282353e-03   p_cons 4.722838e-01   p_joint 3.904412e-03

Outputting figure to mutsig2_images.part000000000131/PJA1.10_1936_680000_0.0022824_0.47228_0.0039044.png
                gene_name: PJA1
               theta_stop: 0.099 
                    nperm: 680000 
                     p_ks: 0.0023 
        ci_ks_bounds_left: 0.0022 
       ci_ks_bounds_right: 0.0024 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0041 

Current progress: 18 percent done.
PIK3C2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
KS ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
PIK3C2G   10000 perm   2 sec   (4498 perm/sec)   p_kst 9.464000e-01   p_cons 8.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3C2G.9_4462_10000_0.9464_0.8659_1.png
                gene_name: PIK3C2G
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PIK3R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
PIK3R4   10000 perm   2 sec   (4579 perm/sec)   p_kst 1.217000e-01   p_cons 1.728000e-01   p_joint 1.128000e-01

Joint ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
Cons ci ratio: 6.349847e-02	ci left: 1.549439e-01	ci right 1.651552e-01	k: 3200	n:20000
KS ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
PIK3R4   20000 perm   5 sec   (4194 perm/sec)   p_kst 1.223000e-01   p_cons 1.600000e-01   p_joint 1.197000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R4.9_4153_20000_0.1223_0.16_0.1197.png
                gene_name: PIK3R4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 21 percent done.
PKD1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
PKD1   10000 perm   3 sec   (3126 perm/sec)   p_kst 3.210000e-02   p_cons 5.363000e-01   p_joint 9.520000e-02

Joint ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
Cons ci ratio: 2.609284e-02	ci left: 5.232041e-01	ci right 5.370871e-01	k: 10603	n:20000
KS ci ratio: 1.514734e-01	ci left: 2.994113e-02	ci right 3.489604e-02	k: 647	n:20000
PKD1   20000 perm   7 sec   (2904 perm/sec)   p_kst 3.235000e-02   p_cons 5.301500e-01   p_joint 8.195000e-02

Joint ci ratio: 7.205264e-02	ci left: 8.655523e-02	ci right 9.305780e-02	k: 2693	n:30000
Cons ci ratio: 2.097321e-02	ci left: 5.323050e-01	ci right 5.436210e-01	k: 16139	n:30000
KS ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
PKD1   30000 perm   11 sec   (2815 perm/sec)   p_kst 3.206667e-02   p_cons 5.379667e-01   p_joint 8.976667e-02

Joint ci ratio: 6.891918e-02	ci left: 7.224041e-02	ci right 7.742152e-02	k: 2992	n:40000
Cons ci ratio: 1.816049e-02	ci left: 5.331492e-01	ci right 5.429453e-01	k: 21522	n:40000
KS ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
PKD1   40000 perm   15 sec   (2750 perm/sec)   p_kst 3.220000e-02   p_cons 5.380500e-01   p_joint 7.480000e-02

Joint ci ratio: 6.281474e-02	ci left: 6.998570e-02	ci right 7.454411e-02	k: 3612	n:50000
Cons ci ratio: 1.659190e-02	ci left: 5.230925e-01	ci right 5.318643e-01	k: 26374	n:50000
KS ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
PKD1   50000 perm   18 sec   (2705 perm/sec)   p_kst 3.206000e-02   p_cons 5.274800e-01   p_joint 7.224000e-02

Outputting figure to mutsig2_images.part000000000131/PKD1.8_13096_50000_0.03206_0.52748_0.07224.png
                gene_name: PKD1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 23 percent done.
PIGO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
PIGO   10000 perm   2 sec   (4496 perm/sec)   p_kst 2.407000e-01   p_cons 2.188000e-01   p_joint 2.177000e-01

Outputting figure to mutsig2_images.part000000000131/PIGO.7_3310_10000_0.2407_0.2188_0.2177.png
                gene_name: PIGO
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 25 percent done.
PIK3AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
Cons ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
PIK3AP1   10000 perm   2 sec   (5250 perm/sec)   p_kst 1.861000e-01   p_cons 4.671000e-01   p_joint 3.192000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3AP1.7_2486_10000_0.1861_0.4671_0.3192.png
                gene_name: PIK3AP1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 26 percent done.
PIK3C2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
PIK3C2B   10000 perm   2 sec   (4352 perm/sec)   p_kst 6.795000e-01   p_cons 4.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3C2B.7_5033_10000_0.6795_0.4698_1.png
                gene_name: PIK3C2B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
PIK3C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
KS ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
PIK3C3   10000 perm   2 sec   (5405 perm/sec)   p_kst 9.376000e-01   p_cons 9.930000e-02   p_joint 4.565000e-01

Joint ci ratio: 3.616949e-02	ci left: 3.632533e-01	ci right 3.766845e-01	k: 7399	n:20000
Cons ci ratio: 8.354924e-02	ci left: 9.499246e-02	ci right 1.033245e-01	k: 1982	n:20000
KS ci ratio: 6.520596e-03	ci left: 9.444211e-01	ci right 9.506480e-01	k: 18952	n:20000
PIK3C3   20000 perm   4 sec   (4886 perm/sec)   p_kst 9.476000e-01   p_cons 9.910000e-02   p_joint 3.699500e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C3.7_2764_20000_0.9476_0.0991_0.36995.png
                gene_name: PIK3C3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 30 percent done.
PIK3CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.976471e-02	ci left: 2.917214e-01	ci right 3.097948e-01	k: 3007	n:10000
Cons ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
KS ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
PIK3CB   10000 perm   2 sec   (4987 perm/sec)   p_kst 2.832000e-01   p_cons 1.649000e-01   p_joint 3.007000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3CB.7_3299_10000_0.2832_0.1649_0.3007.png
                gene_name: PIK3CB
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 31 percent done.
PIK3R5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
Cons ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
KS ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
PIK3R5   10000 perm   2 sec   (5538 perm/sec)   p_kst 7.200000e-02   p_cons 5.367000e-01   p_joint 1.652000e-01

Joint ci ratio: 6.792498e-02	ci left: 1.378798e-01	ci right 1.476244e-01	k: 2854	n:20000
Cons ci ratio: 2.592572e-02	ci left: 5.264065e-01	ci right 5.402838e-01	k: 10667	n:20000
KS ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
PIK3R5   20000 perm   4 sec   (4983 perm/sec)   p_kst 7.050000e-02   p_cons 5.333500e-01   p_joint 1.427000e-01

Joint ci ratio: 5.272848e-02	ci left: 1.514492e-01	ci right 1.596843e-01	k: 4666	n:30000
Cons ci ratio: 2.155812e-02	ci left: 5.185966e-01	ci right 5.299320e-01	k: 15728	n:30000
KS ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
PIK3R5   30000 perm   6 sec   (4769 perm/sec)   p_kst 7.003333e-02   p_cons 5.242667e-01   p_joint 1.555333e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R5.7_2715_30000_0.070033_0.52427_0.15553.png
                gene_name: PIK3R5
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 33 percent done.
PIP5K1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
Cons ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
PIP5K1B   10000 perm   2 sec   (5623 perm/sec)   p_kst 1.376000e-01   p_cons 2.667000e-01   p_joint 1.959000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1B.7_1675_10000_0.1376_0.2667_0.1959.png
                gene_name: PIP5K1B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 34 percent done.
PIGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
PIGR   10000 perm   2 sec   (5180 perm/sec)   p_kst 6.592000e-01   p_cons 7.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIGR.6_2335_10000_0.6592_0.7468_1.png
                gene_name: PIGR
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
PIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
PIP   10000 perm   2 sec   (5868 perm/sec)   p_kst 3.712000e-01   p_cons 4.726000e-01   p_joint 5.368000e-01

Outputting figure to mutsig2_images.part000000000131/PIP.6_457_10000_0.3712_0.4726_0.5368.png
                gene_name: PIP
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 38 percent done.
PIWIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
PIWIL2   10000 perm   2 sec   (5434 perm/sec)   p_kst 4.064000e-01   p_cons 8.550000e-02   p_joint 2.782000e-01

Joint ci ratio: 5.462679e-02	ci left: 1.991264e-01	ci right 2.103596e-01	k: 4094	n:20000
Cons ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
KS ci ratio: 3.252014e-02	ci left: 4.138950e-01	ci right 4.276280e-01	k: 8415	n:20000
PIWIL2   20000 perm   4 sec   (4868 perm/sec)   p_kst 4.207500e-01   p_cons 8.090000e-02   p_joint 2.047000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL2.6_3010_20000_0.42075_0.0809_0.2047.png
                gene_name: PIWIL2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
PIWIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
Cons ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
KS ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
PIWIL3   10000 perm   2 sec   (5749 perm/sec)   p_kst 4.433000e-01   p_cons 4.840000e-02   p_joint 1.043000e-01

Joint ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
Cons ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
KS ci ratio: 3.111625e-02	ci left: 4.355004e-01	ci right 4.493163e-01	k: 8848	n:20000
PIWIL3   20000 perm   4 sec   (5164 perm/sec)   p_kst 4.424000e-01   p_cons 4.655000e-02   p_joint 1.435500e-01

Joint ci ratio: 6.898663e-02	ci left: 9.380472e-02	ci right 1.005402e-01	k: 2914	n:30000
Cons ci ratio: 1.026764e-01	ci left: 4.394952e-02	ci right 4.873883e-02	k: 1389	n:30000
KS ci ratio: 2.547410e-02	ci left: 4.354707e-01	ci right 4.467407e-01	k: 13233	n:30000
PIWIL3   30000 perm   6 sec   (4947 perm/sec)   p_kst 4.411000e-01   p_cons 4.630000e-02   p_joint 9.713333e-02

Joint ci ratio: 5.599412e-02	ci left: 1.060854e-01	ci right 1.122215e-01	k: 4365	n:40000
Cons ci ratio: 8.842979e-02	ci left: 4.475064e-02	ci right 4.891547e-02	k: 1872	n:40000
KS ci ratio: 2.205147e-02	ci left: 4.364509e-01	ci right 4.462077e-01	k: 17653	n:40000
PIWIL3   40000 perm   8 sec   (4793 perm/sec)   p_kst 4.413250e-01   p_cons 4.680000e-02   p_joint 1.091250e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL3.6_2729_40000_0.44133_0.0468_0.10912.png
                gene_name: PIWIL3
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
PKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
PKD2   10000 perm   2 sec   (5202 perm/sec)   p_kst 3.693000e-01   p_cons 1.590000e-01   p_joint 3.366000e-01

Outputting figure to mutsig2_images.part000000000131/PKD2.6_2967_10000_0.3693_0.159_0.3366.png
                gene_name: PKD2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 43 percent done.
PIGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
KS ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
PIGM   10000 perm   2 sec   (6021 perm/sec)   p_kst 6.297000e-01   p_cons 3.059000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000131/PIGM.5_1276_10000_0.6297_0.3059_0.6353.png
                gene_name: PIGM
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 44 percent done.
PIK3R6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
PIK3R6   10000 perm   2 sec   (5607 perm/sec)   p_kst 1.600000e-02   p_cons 7.655000e-01   p_joint 4.380000e-02

Joint ci ratio: 1.118075e-01	ci left: 5.465393e-02	ci right 6.117534e-02	k: 1157	n:20000
Cons ci ratio: 1.540991e-02	ci left: 7.579512e-01	ci right 7.697720e-01	k: 15278	n:20000
KS ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
PIK3R6   20000 perm   4 sec   (5050 perm/sec)   p_kst 1.660000e-02   p_cons 7.639000e-01   p_joint 5.785000e-02

Joint ci ratio: 9.899755e-02	ci left: 4.720273e-02	ci right 5.215161e-02	k: 1489	n:30000
Cons ci ratio: 1.205582e-02	ci left: 7.742277e-01	ci right 7.836516e-01	k: 23369	n:30000
KS ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
PIK3R6   30000 perm   6 sec   (4821 perm/sec)   p_kst 1.686667e-02   p_cons 7.789667e-01   p_joint 4.963333e-02

Joint ci ratio: 8.362259e-02	ci left: 4.989327e-02	ci right 5.427205e-02	k: 2082	n:40000
Cons ci ratio: 1.043128e-02	ci left: 7.751780e-01	ci right 7.833314e-01	k: 31171	n:40000
KS ci ratio: 1.508558e-01	ci left: 1.534652e-02	ci right 1.787436e-02	k: 663	n:40000
PIK3R6   40000 perm   9 sec   (4676 perm/sec)   p_kst 1.657500e-02   p_cons 7.792750e-01   p_joint 5.205000e-02

Joint ci ratio: 6.882855e-02	ci left: 5.881936e-02	ci right 6.303179e-02	k: 3045	n:50000
Cons ci ratio: 9.313610e-03	ci left: 7.762221e-01	ci right 7.835053e-01	k: 38994	n:50000
KS ci ratio: 1.337065e-01	ci left: 1.576896e-02	ci right 1.804762e-02	k: 844	n:50000
PIK3R6   50000 perm   11 sec   (4554 perm/sec)   p_kst 1.688000e-02   p_cons 7.798800e-01   p_joint 6.090000e-02

Joint ci ratio: 5.697860e-02	ci left: 7.102955e-02	ci right 7.521185e-02	k: 4386	n:60000
Cons ci ratio: 8.509466e-03	ci left: 7.762447e-01	ci right 7.828949e-01	k: 46775	n:60000
KS ci ratio: 1.211486e-01	ci left: 1.611006e-02	ci right 1.820368e-02	k: 1028	n:60000
PIK3R6   60000 perm   13 sec   (4455 perm/sec)   p_kst 1.713333e-02   p_cons 7.795833e-01   p_joint 7.310000e-02

Joint ci ratio: 5.822470e-02	ci left: 5.904086e-02	ci right 6.259565e-02	k: 4256	n:70000
Cons ci ratio: 7.897496e-03	ci left: 7.756492e-01	ci right 7.818134e-01	k: 54512	n:70000
KS ci ratio: 1.129058e-01	ci left: 1.597195e-02	ci right 1.789697e-02	k: 1184	n:70000
PIK3R6   70000 perm   16 sec   (4370 perm/sec)   p_kst 1.691429e-02   p_cons 7.787429e-01   p_joint 6.080000e-02

Joint ci ratio: 5.910050e-02	ci left: 5.058240e-02	ci right 5.367518e-02	k: 4169	n:80000
Cons ci ratio: 7.375485e-03	ci left: 7.764098e-01	ci right 7.821699e-01	k: 62344	n:80000
KS ci ratio: 1.060241e-01	ci left: 1.590854e-02	ci right 1.770175e-02	k: 1343	n:80000
PIK3R6   80000 perm   19 sec   (4290 perm/sec)   p_kst 1.678750e-02   p_cons 7.793000e-01   p_joint 5.211250e-02

Joint ci ratio: 5.917673e-02	ci left: 4.511150e-02	ci right 4.787338e-02	k: 4183	n:90000
Cons ci ratio: 6.950303e-03	ci left: 7.767434e-01	ci right 7.821719e-01	k: 70152	n:90000
KS ci ratio: 9.936073e-02	ci left: 1.615464e-02	ci right 1.785447e-02	k: 1529	n:90000
PIK3R6   90000 perm   21 sec   (4215 perm/sec)   p_kst 1.698889e-02   p_cons 7.794667e-01   p_joint 4.647778e-02

Outputting figure to mutsig2_images.part000000000131/PIK3R6.4_2340_90000_0.016989_0.77947_0.046478.png
                gene_name: PIK3R6
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 46 percent done.
PILRB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
PILRB   10000 perm   2 sec   (6228 perm/sec)   p_kst 7.980000e-02   p_cons 8.300000e-01   p_joint 1.845000e-01

Joint ci ratio: 6.331019e-02	ci left: 1.557335e-01	ci right 1.659653e-01	k: 3216	n:20000
Cons ci ratio: 1.256289e-02	ci left: 8.243164e-01	ci right 8.347876e-01	k: 16592	n:20000
KS ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
PILRB   20000 perm   4 sec   (5606 perm/sec)   p_kst 7.895000e-02   p_cons 8.296000e-01   p_joint 1.608000e-01

Outputting figure to mutsig2_images.part000000000131/PILRB.4_700_20000_0.07895_0.8296_0.1608.png
                gene_name: PILRB
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 48 percent done.
PIP4K2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
PIP4K2A   10000 perm   2 sec   (5831 perm/sec)   p_kst 2.548000e-01   p_cons 3.762000e-01   p_joint 2.627000e-01

Outputting figure to mutsig2_images.part000000000131/PIP4K2A.5_1261_10000_0.2548_0.3762_0.2627.png
                gene_name: PIP4K2A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 49 percent done.
PIP5K1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PIP5K1A   10000 perm   2 sec   (5672 perm/sec)   p_kst 1   p_cons 3.673000e-01   p_joint 7.620000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1A.5_1753_10000_1_0.3673_0.762.png
                gene_name: PIP5K1A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 51 percent done.
PITPNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
PITPNM2   10000 perm   2 sec   (4836 perm/sec)   p_kst 1.880000e-02   p_cons 2.796000e-01   p_joint 1.260000e-02

Joint ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
Cons ci ratio: 4.426718e-02	ci left: 2.753736e-01	ci right 2.878899e-01	k: 5632	n:20000
KS ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
PITPNM2   20000 perm   5 sec   (4399 perm/sec)   p_kst 2.095000e-02   p_cons 2.816000e-01   p_joint 2.355000e-02

Joint ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
Cons ci ratio: 3.445345e-02	ci left: 2.962103e-01	ci right 3.066282e-01	k: 9042	n:30000
KS ci ratio: 1.534099e-01	ci left: 1.966392e-02	ci right 2.296302e-02	k: 638	n:30000
PITPNM2   30000 perm   7 sec   (4224 perm/sec)   p_kst 2.126667e-02   p_cons 3.014000e-01   p_joint 3.673333e-02

Joint ci ratio: 1.063482e-01	ci left: 3.110037e-02	ci right 3.461788e-02	k: 1313	n:40000
Cons ci ratio: 2.967952e-02	ci left: 2.991456e-01	ci right 3.081829e-01	k: 12146	n:40000
KS ci ratio: 1.306800e-01	ci left: 2.056061e-02	ci right 2.345936e-02	k: 879	n:40000
PITPNM2   40000 perm   10 sec   (4098 perm/sec)   p_kst 2.197500e-02   p_cons 3.036500e-01   p_joint 3.282500e-02

Joint ci ratio: 1.059660e-01	ci left: 2.522660e-02	ci right 2.806872e-02	k: 1331	n:50000
Cons ci ratio: 2.658105e-02	ci left: 2.990730e-01	ci right 3.071498e-01	k: 15155	n:50000
KS ci ratio: 1.170473e-01	ci left: 2.065439e-02	ci right 2.324153e-02	k: 1096	n:50000
PITPNM2   50000 perm   12 sec   (4010 perm/sec)   p_kst 2.192000e-02   p_cons 3.031000e-01   p_joint 2.662000e-02

Joint ci ratio: 9.383034e-02	ci left: 2.693878e-02	ci right 2.960711e-02	k: 1695	n:60000
Cons ci ratio: 2.426240e-02	ci left: 2.994736e-01	ci right 3.068454e-01	k: 18189	n:60000
KS ci ratio: 1.071995e-01	ci left: 2.063015e-02	ci right 2.298309e-02	k: 1307	n:60000
PITPNM2   60000 perm   15 sec   (3936 perm/sec)   p_kst 2.178333e-02   p_cons 3.031500e-01   p_joint 2.825000e-02

Joint ci ratio: 9.631984e-02	ci left: 2.199982e-02	ci right 2.423995e-02	k: 1617	n:70000
Cons ci ratio: 2.252861e-02	ci left: 2.985145e-01	ci right 3.053305e-01	k: 21134	n:70000
KS ci ratio: 9.921429e-02	ci left: 2.073093e-02	ci right 2.290896e-02	k: 1526	n:70000
PITPNM2   70000 perm   18 sec   (3863 perm/sec)   p_kst 2.180000e-02   p_cons 3.019143e-01   p_joint 2.310000e-02

Outputting figure to mutsig2_images.part000000000131/PITPNM2.5_4146_70000_0.0218_0.30191_0.0231.png
                gene_name: PITPNM2
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 52 percent done.
PKD2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
Cons ci ratio: 1.019629e-02	ci left: 9.317489e-01	ci right 9.413948e-01	k: 9367	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
PKD2L1   10000 perm   2 sec   (5172 perm/sec)   p_kst 3.243000e-01   p_cons 9.367000e-01   p_joint 4.278000e-01

Outputting figure to mutsig2_images.part000000000131/PKD2L1.5_2482_10000_0.3243_0.9367_0.4278.png
                gene_name: PKD2L1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
PIGX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
Cons ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KS ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
PIGX   10000 perm   2 sec   (6281 perm/sec)   p_kst 4.292000e-01   p_cons 1.351000e-01   p_joint 3.252000e-01

Outputting figure to mutsig2_images.part000000000131/PIGX.4_859_10000_0.4292_0.1351_0.3252.png
                gene_name: PIGX
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 56 percent done.
PION
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
Cons ci ratio: 2.783921e-02	ci left: 6.553502e-01	ci right 6.739538e-01	k: 6647	n:10000
KS ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
PION   10000 perm   2 sec   (5566 perm/sec)   p_kst 9.424000e-01   p_cons 6.647000e-01   p_joint 8.631000e-01

Outputting figure to mutsig2_images.part000000000131/PION.4_2689_10000_0.9424_0.6647_0.8631.png
                gene_name: PION
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 57 percent done.
PITPNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
Cons ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
PITPNM3   10000 perm   2 sec   (5345 perm/sec)   p_kst 1.200000e-02   p_cons 3.549000e-01   p_joint 9.500000e-02

Joint ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
Cons ci ratio: 3.752640e-02	ci left: 3.463237e-01	ci right 3.596191e-01	k: 7059	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
PITPNM3   20000 perm   4 sec   (4804 perm/sec)   p_kst 1.220000e-02   p_cons 3.529500e-01   p_joint 4.365000e-02

Joint ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
Cons ci ratio: 3.074777e-02	ci left: 3.459624e-01	ci right 3.567997e-01	k: 10541	n:30000
KS ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
PITPNM3   30000 perm   7 sec   (4584 perm/sec)   p_kst 1.283333e-02   p_cons 3.513667e-01   p_joint 3.993333e-02

Joint ci ratio: 1.167184e-01	ci left: 2.582210e-02	ci right 2.904700e-02	k: 1096	n:40000
Cons ci ratio: 2.672354e-02	ci left: 3.450751e-01	ci right 3.544467e-01	k: 13990	n:40000
KS ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
PITPNM3   40000 perm   9 sec   (4446 perm/sec)   p_kst 1.220000e-02   p_cons 3.497500e-01   p_joint 2.740000e-02

Joint ci ratio: 1.129070e-01	ci left: 2.220936e-02	ci right 2.488635e-02	k: 1176	n:50000
Cons ci ratio: 2.394936e-02	ci left: 3.446813e-01	ci right 3.530563e-01	k: 17443	n:50000
KS ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
PITPNM3   50000 perm   12 sec   (4341 perm/sec)   p_kst 1.216000e-02   p_cons 3.488600e-01   p_joint 2.352000e-02

Joint ci ratio: 9.570494e-02	ci left: 2.589672e-02	ci right 2.851595e-02	k: 1631	n:60000
Cons ci ratio: 2.182727e-02	ci left: 3.457835e-01	ci right 3.534310e-01	k: 20976	n:60000
KS ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
PITPNM3   60000 perm   14 sec   (4247 perm/sec)   p_kst 1.186667e-02   p_cons 3.496000e-01   p_joint 2.718333e-02

Joint ci ratio: 9.220284e-02	ci left: 2.400961e-02	ci right 2.634426e-02	k: 1761	n:70000
Cons ci ratio: 2.021394e-02	ci left: 3.459384e-01	ci right 3.530169e-01	k: 24463	n:70000
KS ci ratio: 1.355862e-01	ci left: 1.099939e-02	ci right 1.261289e-02	k: 825	n:70000
PITPNM3   70000 perm   17 sec   (4162 perm/sec)   p_kst 1.178571e-02   p_cons 3.494714e-01   p_joint 2.515714e-02

Joint ci ratio: 9.360873e-02	ci left: 2.044498e-02	ci right 2.246493e-02	k: 1715	n:80000
Cons ci ratio: 1.890418e-02	ci left: 3.462700e-01	ci right 3.528909e-01	k: 27966	n:80000
KS ci ratio: 1.265583e-01	ci left: 1.109954e-02	ci right 1.261118e-02	k: 947	n:80000
PITPNM3   80000 perm   20 sec   (4085 perm/sec)   p_kst 1.183750e-02   p_cons 3.495750e-01   p_joint 2.143750e-02

Joint ci ratio: 7.462815e-02	ci left: 2.863328e-02	ci right 3.086383e-02	k: 2676	n:90000
Cons ci ratio: 1.779905e-02	ci left: 3.470717e-01	ci right 3.533158e-01	k: 31517	n:90000
KS ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
PITPNM3   90000 perm   22 sec   (4017 perm/sec)   p_kst 1.166667e-02   p_cons 3.501889e-01   p_joint 2.973333e-02

Joint ci ratio: 7.131219e-02	ci left: 2.828306e-02	ci right 3.038436e-02	k: 2932	n:100000
Cons ci ratio: 1.688158e-02	ci left: 3.473426e-01	ci right 3.532661e-01	k: 35030	n:100000
KS ci ratio: 1.141269e-01	ci left: 1.099412e-02	ci right 1.233442e-02	k: 1165	n:100000
PITPNM3   100000 perm   25 sec   (3951 perm/sec)   p_kst 1.165000e-02   p_cons 3.503000e-01   p_joint 2.932000e-02

Joint ci ratio: 7.245749e-02	ci left: 2.497825e-02	ci right 2.686504e-02	k: 2850	n:110000
Cons ci ratio: 1.609502e-02	ci left: 3.475074e-01	ci right 3.531550e-01	k: 38536	n:110000
KS ci ratio: 1.089706e-01	ci left: 1.099328e-02	ci right 1.226903e-02	k: 1278	n:110000
PITPNM3   110000 perm   28 sec   (3888 perm/sec)   p_kst 1.161818e-02   p_cons 3.503273e-01   p_joint 2.590909e-02

Joint ci ratio: 7.245974e-02	ci left: 2.294494e-02	ci right 2.467818e-02	k: 2856	n:120000
Cons ci ratio: 1.541471e-02	ci left: 3.474838e-01	ci right 3.528901e-01	k: 42022	n:120000
KS ci ratio: 1.042284e-01	ci left: 1.104242e-02	ci right 1.226469e-02	k: 1397	n:120000
PITPNM3   120000 perm   31 sec   (3821 perm/sec)   p_kst 1.164167e-02   p_cons 3.501833e-01   p_joint 2.380000e-02

Joint ci ratio: 6.605355e-02	ci left: 2.550495e-02	ci right 2.725472e-02	k: 3428	n:130000
Cons ci ratio: 1.478296e-02	ci left: 3.484204e-01	ci right 3.536170e-01	k: 45632	n:130000
KS ci ratio: 1.000559e-01	ci left: 1.108502e-02	ci right 1.226000e-02	k: 1516	n:130000
PITPNM3   130000 perm   35 sec   (3764 perm/sec)   p_kst 1.166154e-02   p_cons 3.510154e-01   p_joint 2.636923e-02

Joint ci ratio: 5.787539e-02	ci left: 3.080953e-02	ci right 3.265279e-02	k: 4441	n:140000
Cons ci ratio: 1.422875e-02	ci left: 3.490414e-01	ci right 3.540505e-01	k: 49216	n:140000
KS ci ratio: 9.590362e-02	ci left: 1.122696e-02	ci right 1.236482e-02	k: 1650	n:140000
PITPNM3   140000 perm   38 sec   (3710 perm/sec)   p_kst 1.178571e-02   p_cons 3.515429e-01   p_joint 3.172143e-02

Outputting figure to mutsig2_images.part000000000131/PITPNM3.4_3005_140000_0.011786_0.35154_0.031721.png
                gene_name: PITPNM3
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 59 percent done.
PITX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
Cons ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
PITX1   10000 perm   2 sec   (6292 perm/sec)   p_kst 5.143000e-01   p_cons 9.410000e-02   p_joint 3.045000e-01

Joint ci ratio: 4.844234e-02	ci left: 2.406385e-01	ci right 2.526353e-01	k: 4932	n:20000
Cons ci ratio: 8.500824e-02	ci left: 9.200023e-02	ci right 1.002176e-01	k: 1921	n:20000
KS ci ratio: 2.662127e-02	ci left: 5.131986e-01	ci right 5.270955e-01	k: 10403	n:20000
PITX1   20000 perm   4 sec   (5613 perm/sec)   p_kst 5.201500e-01   p_cons 9.605000e-02   p_joint 2.466000e-01

Outputting figure to mutsig2_images.part000000000131/PITX1.4_957_20000_0.52015_0.09605_0.2466.png
                gene_name: PITX1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 61 percent done.
PITX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
KS ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
PITX2   10000 perm   2 sec   (6225 perm/sec)   p_kst 7.941000e-01   p_cons 7.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PITX2.4_1179_10000_0.7941_0.7225_1.png
                gene_name: PITX2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PIWIL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
PIWIL4   10000 perm   2 sec   (5529 perm/sec)   p_kst 3.900000e-01   p_cons 5.000000e-03   p_joint 1.830000e-02

Joint ci ratio: 1.197522e-01	ci left: 4.779719e-02	ci right 5.393423e-02	k: 1016	n:20000
Cons ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
KS ci ratio: 3.466624e-02	ci left: 3.831818e-01	ci right 3.967502e-01	k: 7799	n:20000
PIWIL4   20000 perm   4 sec   (4990 perm/sec)   p_kst 3.899500e-01   p_cons 5.300000e-03   p_joint 5.080000e-02

Joint ci ratio: 1.314246e-01	ci left: 2.690430e-02	ci right 3.072102e-02	k: 863	n:30000
Cons ci ratio: 3.071465e-01	ci left: 4.571451e-03	ci right 6.259842e-03	k: 161	n:30000
KS ci ratio: 2.830876e-02	ci left: 3.843752e-01	ci right 3.954462e-01	k: 11697	n:30000
PIWIL4   30000 perm   6 sec   (4750 perm/sec)   p_kst 3.899000e-01   p_cons 5.366667e-03   p_joint 2.876667e-02

Joint ci ratio: 1.498265e-01	ci left: 1.556318e-02	ci right 1.810766e-02	k: 672	n:40000
Cons ci ratio: 2.486493e-01	ci left: 5.407373e-03	ci right 6.965625e-03	k: 246	n:40000
KS ci ratio: 2.453713e-02	ci left: 3.847169e-01	ci right 3.942991e-01	k: 15580	n:40000
PIWIL4   40000 perm   9 sec   (4499 perm/sec)   p_kst 3.895000e-01   p_cons 6.150000e-03   p_joint 1.680000e-02

Joint ci ratio: 1.478715e-01	ci left: 1.283429e-02	ci right 1.490272e-02	k: 692	n:50000
Cons ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
KS ci ratio: 2.195151e-02	ci left: 3.851225e-01	ci right 3.936904e-01	k: 19470	n:50000
PIWIL4   50000 perm   11 sec   (4413 perm/sec)   p_kst 3.894000e-01   p_cons 6.160000e-03   p_joint 1.384000e-02

Joint ci ratio: 1.422396e-01	ci left: 1.161024e-02	ci right 1.340404e-02	k: 749	n:60000
Cons ci ratio: 1.986195e-01	ci left: 5.809248e-03	ci right 7.105852e-03	k: 386	n:60000
KS ci ratio: 1.998925e-02	ci left: 3.866766e-01	ci right 3.945007e-01	k: 23435	n:60000
PIWIL4   60000 perm   14 sec   (4338 perm/sec)   p_kst 3.905833e-01   p_cons 6.433333e-03   p_joint 1.248333e-02

Joint ci ratio: 1.142369e-01	ci left: 1.559702e-02	ci right 1.750050e-02	k: 1157	n:70000
Cons ci ratio: 1.827690e-01	ci left: 5.931717e-03	ci right 7.138307e-03	k: 456	n:70000
KS ci ratio: 1.857549e-02	ci left: 3.852006e-01	ci right 3.924372e-01	k: 27217	n:70000
PIWIL4   70000 perm   16 sec   (4262 perm/sec)   p_kst 3.888143e-01   p_cons 6.514286e-03   p_joint 1.652857e-02

Joint ci ratio: 1.102732e-01	ci left: 1.469183e-02	ci right 1.641856e-02	k: 1243	n:80000
Cons ci ratio: 1.716753e-01	ci left: 5.918949e-03	ci right 7.042291e-03	k: 517	n:80000
KS ci ratio: 1.736312e-02	ci left: 3.857818e-01	ci right 3.925513e-01	k: 31133	n:80000
PIWIL4   80000 perm   19 sec   (4193 perm/sec)   p_kst 3.891625e-01   p_cons 6.462500e-03   p_joint 1.553750e-02

Joint ci ratio: 1.009844e-01	ci left: 1.563446e-02	ci right 1.730803e-02	k: 1481	n:90000
Cons ci ratio: 1.611282e-01	ci left: 6.006721e-03	ci right 7.069904e-03	k: 587	n:90000
KS ci ratio: 1.635815e-02	ci left: 3.863233e-01	ci right 3.927060e-01	k: 35056	n:90000
PIWIL4   90000 perm   22 sec   (4127 perm/sec)   p_kst 3.895111e-01   p_cons 6.522222e-03   p_joint 1.645556e-02

Joint ci ratio: 7.108778e-02	ci left: 2.845995e-02	ci right 3.056746e-02	k: 2950	n:100000
Cons ci ratio: 1.527813e-01	ci left: 6.040147e-03	ci right 7.048795e-03	k: 653	n:100000
KS ci ratio: 1.551128e-02	ci left: 3.867155e-01	ci right 3.927708e-01	k: 38974	n:100000
PIWIL4   100000 perm   25 sec   (4058 perm/sec)   p_kst 3.897400e-01   p_cons 6.530000e-03   p_joint 2.950000e-02

Joint ci ratio: 6.116108e-02	ci left: 3.489786e-02	ci right 3.710851e-02	k: 3959	n:110000
Cons ci ratio: 1.437137e-01	ci left: 6.235172e-03	ci right 7.209292e-03	k: 738	n:110000
KS ci ratio: 1.476444e-02	ci left: 3.876607e-01	ci right 3.934359e-01	k: 42960	n:110000
PIWIL4   110000 perm   28 sec   (3995 perm/sec)   p_kst 3.905455e-01   p_cons 6.709091e-03   p_joint 3.599091e-02

Joint ci ratio: 6.290976e-02	ci left: 3.035480e-02	ci right 3.233460e-02	k: 3760	n:120000
Cons ci ratio: 1.363396e-01	ci left: 6.375010e-03	ci right 7.315727e-03	k: 820	n:120000
KS ci ratio: 1.410635e-02	ci left: 3.887785e-01	ci right 3.943100e-01	k: 46985	n:120000
PIWIL4   120000 perm   31 sec   (3930 perm/sec)   p_kst 3.915417e-01   p_cons 6.833333e-03   p_joint 3.133333e-02

Joint ci ratio: 6.081580e-02	ci left: 3.002658e-02	ci right 3.191749e-02	k: 4025	n:130000
Cons ci ratio: 1.313196e-01	ci left: 6.360449e-03	ci right 7.261762e-03	k: 884	n:130000
KS ci ratio: 1.353033e-02	ci left: 3.896828e-01	ci right 3.949989e-01	k: 51004	n:130000
PIWIL4   130000 perm   34 sec   (3874 perm/sec)   p_kst 3.923385e-01   p_cons 6.800000e-03   p_joint 3.096154e-02

Joint ci ratio: 5.919577e-02	ci left: 2.947164e-02	ci right 3.127645e-02	k: 4251	n:140000
Cons ci ratio: 1.270184e-01	ci left: 6.327760e-03	ci right 7.192858e-03	k: 945	n:140000
KS ci ratio: 1.303609e-02	ci left: 3.898552e-01	ci right 3.949778e-01	k: 54938	n:140000
PIWIL4   140000 perm   37 sec   (3820 perm/sec)   p_kst 3.924143e-01   p_cons 6.750000e-03   p_joint 3.036429e-02

Joint ci ratio: 5.429773e-02	ci left: 3.266747e-02	ci right 3.449729e-02	k: 5036	n:150000
Cons ci ratio: 1.224425e-01	ci left: 6.370944e-03	ci right 7.208292e-03	k: 1017	n:150000
KS ci ratio: 1.259040e-02	ci left: 3.900809e-01	ci right 3.950299e-01	k: 58883	n:150000
PIWIL4   150000 perm   40 sec   (3767 perm/sec)   p_kst 3.925533e-01   p_cons 6.780000e-03   p_joint 3.357333e-02

Joint ci ratio: 5.342734e-02	ci left: 3.167967e-02	ci right 3.342482e-02	k: 5207	n:160000
Cons ci ratio: 1.186571e-01	ci left: 6.372822e-03	ci right 7.182706e-03	k: 1083	n:160000
KS ci ratio: 1.218878e-02	ci left: 3.902310e-01	ci right 3.950228e-01	k: 62820	n:160000
PIWIL4   160000 perm   43 sec   (3715 perm/sec)   p_kst 3.926250e-01   p_cons 6.768750e-03   p_joint 3.254375e-02

Joint ci ratio: 5.212743e-02	ci left: 3.135427e-02	ci right 3.303821e-02	k: 5472	n:170000
Cons ci ratio: 1.151018e-01	ci left: 6.386259e-03	ci right 7.171879e-03	k: 1151	n:170000
KS ci ratio: 1.182111e-02	ci left: 3.904539e-01	ci right 3.951027e-01	k: 66772	n:170000
PIWIL4   170000 perm   46 sec   (3665 perm/sec)   p_kst 3.927765e-01   p_cons 6.770588e-03   p_joint 3.218824e-02

Joint ci ratio: 5.808576e-02	ci left: 2.396048e-02	ci right 2.539933e-02	k: 4441	n:180000
Cons ci ratio: 1.122657e-01	ci left: 6.349918e-03	ci right 7.110544e-03	k: 1210	n:180000
KS ci ratio: 1.149552e-02	ci left: 3.902098e-01	ci right 3.947269e-01	k: 70644	n:180000
PIWIL4   180000 perm   50 sec   (3617 perm/sec)   p_kst 3.924667e-01   p_cons 6.722222e-03   p_joint 2.467222e-02

Joint ci ratio: 6.344739e-02	ci left: 1.906948e-02	ci right 2.032418e-02	k: 3741	n:190000
Cons ci ratio: 1.096293e-01	ci left: 6.317615e-03	ci right 7.055452e-03	k: 1269	n:190000
KS ci ratio: 1.128818e-02	ci left: 3.860709e-01	ci right 3.904589e-01	k: 73770	n:190000
PIWIL4   190000 perm   53 sec   (3568 perm/sec)   p_kst 3.882632e-01   p_cons 6.678947e-03   p_joint 1.968947e-02

Joint ci ratio: 6.257363e-02	ci left: 1.864245e-02	ci right 1.985154e-02	k: 3848	n:200000
Cons ci ratio: 1.067667e-01	ci left: 6.337401e-03	ci right 7.057009e-03	k: 1338	n:200000
KS ci ratio: 1.100452e-02	ci left: 3.860333e-01	ci right 3.903099e-01	k: 77634	n:200000
PIWIL4   200000 perm   57 sec   (3521 perm/sec)   p_kst 3.881700e-01   p_cons 6.690000e-03   p_joint 1.924000e-02

Joint ci ratio: 6.656155e-02	ci left: 1.570651e-02	ci right 1.679261e-02	k: 3411	n:210000
Cons ci ratio: 1.038947e-01	ci left: 6.383363e-03	ci right 7.087500e-03	k: 1413	n:210000
KS ci ratio: 1.073789e-02	ci left: 3.861481e-01	ci right 3.903216e-01	k: 81529	n:210000
PIWIL4   210000 perm   60 sec   (3475 perm/sec)   p_kst 3.882333e-01   p_cons 6.728571e-03   p_joint 1.624286e-02

Joint ci ratio: 6.692606e-02	ci left: 1.484039e-02	ci right 1.587243e-02	k: 3377	n:220000
Cons ci ratio: 1.013111e-01	ci left: 6.416519e-03	ci right 7.105664e-03	k: 1486	n:220000
KS ci ratio: 1.047991e-02	ci left: 3.866986e-01	ci right 3.907770e-01	k: 85522	n:220000
PIWIL4   220000 perm   64 sec   (3429 perm/sec)   p_kst 3.887364e-01   p_cons 6.754545e-03   p_joint 1.535000e-02

Joint ci ratio: 6.574433e-02	ci left: 1.472104e-02	ci right 1.572601e-02	k: 3500	n:230000
Cons ci ratio: 9.900699e-02	ci left: 6.434266e-03	ci right 7.108689e-03	k: 1556	n:230000
KS ci ratio: 1.024462e-02	ci left: 3.869721e-01	ci right 3.909612e-01	k: 89462	n:230000
PIWIL4   230000 perm   68 sec   (3384 perm/sec)   p_kst 3.889652e-01   p_cons 6.765217e-03   p_joint 1.521739e-02

Outputting figure to mutsig2_images.part000000000131/PIWIL4.4_2639_230000_0.38897_0.0067652_0.015217.png
                gene_name: PIWIL4
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0068 
      ci_cons_bounds_left: 0.0064 
     ci_cons_bounds_right: 0.0071 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 64 percent done.
PKD2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
Cons ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
KS ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
PKD2L2   10000 perm   2 sec   (6575 perm/sec)   p_kst 6.482000e-01   p_cons 5.248000e-01   p_joint 9.849000e-01

Outputting figure to mutsig2_images.part000000000131/PKD2L2.4_1898_10000_0.6482_0.5248_0.9849.png
                gene_name: PKD2L2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 66 percent done.
PKM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
KS ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
PKM2   10000 perm   2 sec   (5814 perm/sec)   p_kst 1.849000e-01   p_cons 4.240000e-02   p_joint 1.277000e-01

Joint ci ratio: 7.035839e-02	ci left: 1.296028e-01	ci right 1.391038e-01	k: 2686	n:20000
Cons ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
KS ci ratio: 5.835213e-02	ci left: 1.787005e-01	ci right 1.894915e-01	k: 3681	n:20000
PKM2   20000 perm   4 sec   (5244 perm/sec)   p_kst 1.840500e-01   p_cons 6.300000e-02   p_joint 1.343000e-01

Joint ci ratio: 5.751780e-02	ci left: 1.301971e-01	ci right 1.379406e-01	k: 4021	n:30000
Cons ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
KS ci ratio: 4.693249e-02	ci left: 1.842200e-01	ci right 1.931070e-01	k: 5659	n:30000
PKM2   30000 perm   6 sec   (5024 perm/sec)   p_kst 1.886333e-01   p_cons 6.140000e-02   p_joint 1.340333e-01

Outputting figure to mutsig2_images.part000000000131/PKM2.4_1807_30000_0.18863_0.0614_0.13403.png
                gene_name: PKM2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
PIGV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
PIGV   10000 perm   2 sec   (6449 perm/sec)   p_kst 7.228000e-01   p_cons 2.326000e-01   p_joint 6.135000e-01

Outputting figure to mutsig2_images.part000000000131/PIGV.3_1494_10000_0.7228_0.2326_0.6135.png
                gene_name: PIGV
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 69 percent done.
PIK3R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
KS ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
PIK3R1   10000 perm   2 sec   (6142 perm/sec)   p_kst 7.830000e-02   p_cons 3.734000e-01   p_joint 8.060000e-02

Joint ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
Cons ci ratio: 3.565150e-02	ci left: 3.699778e-01	ci right 3.834581e-01	k: 7534	n:20000
KS ci ratio: 9.490190e-02	ci left: 7.485789e-02	ci right 8.236516e-02	k: 1571	n:20000
PIK3R1   20000 perm   4 sec   (5462 perm/sec)   p_kst 7.855000e-02   p_cons 3.767000e-01   p_joint 8.485000e-02

Outputting figure to mutsig2_images.part000000000131/PIK3R1.3_2365_20000_0.07855_0.3767_0.08485.png
                gene_name: PIK3R1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 70 percent done.
PIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
PIM2   10000 perm   1 sec   (6788 perm/sec)   p_kst 2.447000e-01   p_cons 3.542000e-01   p_joint 3.889000e-01

Outputting figure to mutsig2_images.part000000000131/PIM2.3_960_10000_0.2447_0.3542_0.3889.png
                gene_name: PIM2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 72 percent done.
PIP4K2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
PIP4K2C   10000 perm   2 sec   (6353 perm/sec)   p_kst 5.497000e-01   p_cons 7.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP4K2C.3_1306_10000_0.5497_0.7655_1.png
                gene_name: PIP4K2C
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
PIP5K1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
Cons ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
KS ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
PIP5K1C   10000 perm   2 sec   (6041 perm/sec)   p_kst 6.355000e-01   p_cons 9.874000e-01   p_joint 9.873000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1C.3_2079_10000_0.6355_0.9874_0.9873.png
                gene_name: PIP5K1C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
PITPNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
Cons ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
PITPNC1   10000 perm   2 sec   (6549 perm/sec)   p_kst 2.318000e-01   p_cons 4.319000e-01   p_joint 3.447000e-01

Outputting figure to mutsig2_images.part000000000131/PITPNC1.3_1158_10000_0.2318_0.4319_0.3447.png
                gene_name: PITPNC1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 77 percent done.
PITRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
Cons ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
PITRM1   10000 perm   2 sec   (5566 perm/sec)   p_kst 1.518000e-01   p_cons 4.645000e-01   p_joint 3.823000e-01

Outputting figure to mutsig2_images.part000000000131/PITRM1.3_3222_10000_0.1518_0.4645_0.3823.png
                gene_name: PITRM1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 79 percent done.
PJA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
PJA2   10000 perm   2 sec   (6013 perm/sec)   p_kst 6.564000e-01   p_cons 1.309000e-01   p_joint 4.937000e-01

Joint ci ratio: 2.673882e-02	ci left: 5.109978e-01	ci right 5.248970e-01	k: 10359	n:20000
Cons ci ratio: 6.816188e-02	ci left: 1.370419e-01	ci right 1.467624e-01	k: 2837	n:20000
KS ci ratio: 2.019174e-02	ci left: 6.466573e-01	ci right 6.598981e-01	k: 13066	n:20000
PJA2   20000 perm   4 sec   (5354 perm/sec)   p_kst 6.533000e-01   p_cons 1.418500e-01   p_joint 5.179500e-01

Outputting figure to mutsig2_images.part000000000131/PJA2.3_2163_20000_0.6533_0.14185_0.51795.png
                gene_name: PJA2
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 80 percent done.
PIGK
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 82 percent done.
PIGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
Cons ci ratio: 1.459481e-02	ci left: 8.717317e-01	ci right 8.846470e-01	k: 8783	n:10000
KS ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
PIGL   10000 perm   1 sec   (7313 perm/sec)   p_kst 9.300000e-03   p_cons 8.783000e-01   p_joint 2.430000e-02

Joint ci ratio: 1.549680e-01	ci left: 2.859324e-02	ci right 3.344437e-02	k: 619	n:20000
Cons ci ratio: 1.032386e-02	ci left: 8.735873e-01	ci right 8.827025e-01	k: 17564	n:20000
KS ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
PIGL   20000 perm   3 sec   (6396 perm/sec)   p_kst 1.110000e-02   p_cons 8.782000e-01   p_joint 3.095000e-02

Joint ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
Cons ci ratio: 8.431738e-03	ci left: 8.743782e-01	ci right 8.818150e-01	k: 26344	n:30000
KS ci ratio: 2.132920e-01	ci left: 9.945298e-03	ci right 1.235078e-02	k: 333	n:30000
PIGL   30000 perm   5 sec   (6058 perm/sec)   p_kst 1.110000e-02   p_cons 8.781333e-01   p_joint 3.796667e-02

Joint ci ratio: 1.040766e-01	ci left: 3.246471e-02	ci right 3.605332e-02	k: 1369	n:40000
Cons ci ratio: 7.332926e-03	ci left: 8.739690e-01	ci right 8.804261e-01	k: 35089	n:40000
KS ci ratio: 1.867057e-01	ci left: 9.881744e-03	ci right 1.194018e-02	k: 435	n:40000
PIGL   40000 perm   7 sec   (5819 perm/sec)   p_kst 1.087500e-02   p_cons 8.772250e-01   p_joint 3.422500e-02

Joint ci ratio: 1.294841e-01	ci left: 1.683334e-02	ci right 1.918310e-02	k: 899	n:50000
Cons ci ratio: 6.607474e-03	ci left: 8.726955e-01	ci right 8.785008e-01	k: 43781	n:50000
KS ci ratio: 1.684066e-01	ci left: 9.816677e-03	ci right 1.164080e-02	k: 535	n:50000
PIGL   50000 perm   9 sec   (5637 perm/sec)   p_kst 1.070000e-02   p_cons 8.756200e-01   p_joint 1.798000e-02

Joint ci ratio: 1.195624e-01	ci left: 1.654673e-02	ci right 1.866696e-02	k: 1055	n:60000
Cons ci ratio: 6.025361e-03	ci left: 8.731850e-01	ci right 8.784786e-01	k: 52551	n:60000
KS ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
PIGL   60000 perm   11 sec   (5490 perm/sec)   p_kst 1.036667e-02   p_cons 8.758500e-01   p_joint 1.758333e-02

Joint ci ratio: 1.104201e-01	ci left: 1.670829e-02	ci right 1.867484e-02	k: 1237	n:70000
Cons ci ratio: 5.592472e-03	ci left: 8.728299e-01	ci right 8.777390e-01	k: 61271	n:70000
KS ci ratio: 1.443262e-01	ci left: 9.675451e-03	ci right 1.119411e-02	k: 729	n:70000
PIGL   70000 perm   13 sec   (5360 perm/sec)   p_kst 1.041429e-02   p_cons 8.753000e-01   p_joint 1.767143e-02

Joint ci ratio: 4.407961e-02	ci left: 8.797604e-02	ci right 9.195376e-02	k: 7196	n:80000
Cons ci ratio: 5.242337e-03	ci left: 8.725247e-01	ci right 8.771231e-01	k: 69987	n:80000
KS ci ratio: 1.342979e-01	ci left: 9.829386e-03	ci right 1.125644e-02	k: 842	n:80000
PIGL   80000 perm   15 sec   (5240 perm/sec)   p_kst 1.052500e-02   p_cons 8.748375e-01   p_joint 8.995000e-02

Joint ci ratio: 4.424093e-02	ci left: 7.845555e-02	ci right 8.201600e-02	k: 7220	n:90000
Cons ci ratio: 4.930309e-03	ci left: 8.732023e-01	ci right 8.775291e-01	k: 78784	n:90000
KS ci ratio: 1.256419e-01	ci left: 1.002731e-02	ci right 1.138228e-02	k: 962	n:90000
PIGL   90000 perm   18 sec   (5138 perm/sec)   p_kst 1.068889e-02   p_cons 8.753778e-01   p_joint 8.022222e-02

Joint ci ratio: 4.147342e-02	ci left: 8.030664e-02	ci right 8.371765e-02	k: 8200	n:100000
Cons ci ratio: 4.659221e-03	ci left: 8.741629e-01	ci right 8.782552e-01	k: 87622	n:100000
KS ci ratio: 1.180292e-01	ci left: 1.026567e-02	ci right 1.156293e-02	k: 1090	n:100000
PIGL   100000 perm   20 sec   (5032 perm/sec)   p_kst 1.090000e-02   p_cons 8.762200e-01   p_joint 8.200000e-02

Joint ci ratio: 7.629446e-02	ci left: 2.254146e-02	ci right 2.433833e-02	k: 2577	n:110000
Cons ci ratio: 4.443725e-03	ci left: 8.741935e-01	ci right 8.780958e-01	k: 96377	n:110000
KS ci ratio: 1.123993e-01	ci left: 1.032129e-02	ci right 1.155924e-02	k: 1202	n:110000
PIGL   110000 perm   22 sec   (4935 perm/sec)   p_kst 1.092727e-02   p_cons 8.761545e-01   p_joint 2.342727e-02

Joint ci ratio: 8.251860e-02	ci left: 1.769609e-02	ci right 1.922731e-02	k: 2214	n:120000
Cons ci ratio: 4.253972e-03	ci left: 8.743065e-01	ci right 8.780420e-01	k: 105142	n:120000
KS ci ratio: 1.075464e-01	ci left: 1.036076e-02	ci right 1.154639e-02	k: 1313	n:120000
PIGL   120000 perm   25 sec   (4840 perm/sec)   p_kst 1.094167e-02   p_cons 8.761833e-01   p_joint 1.845000e-02

Joint ci ratio: 7.907315e-02	ci left: 1.781967e-02	ci right 1.929423e-02	k: 2411	n:130000
Cons ci ratio: 4.077051e-03	ci left: 8.749160e-01	ci right 8.784980e-01	k: 113973	n:130000
KS ci ratio: 1.032722e-01	ci left: 1.039512e-02	ci right 1.153454e-02	k: 1424	n:130000
PIGL   130000 perm   27 sec   (4749 perm/sec)   p_kst 1.095385e-02   p_cons 8.767154e-01   p_joint 1.854615e-02

Joint ci ratio: 7.584854e-02	ci left: 1.801084e-02	ci right 1.943776e-02	k: 2620	n:140000
Cons ci ratio: 3.922917e-03	ci left: 8.753041e-01	ci right 8.787517e-01	k: 122785	n:140000
KS ci ratio: 9.895051e-02	ci left: 1.053686e-02	ci right 1.164067e-02	k: 1551	n:140000
PIGL   140000 perm   30 sec   (4663 perm/sec)   p_kst 1.107857e-02   p_cons 8.770357e-01   p_joint 1.871429e-02

Outputting figure to mutsig2_images.part000000000131/PIGL.2_787_140000_0.011079_0.87704_0.018714.png
                gene_name: PIGL
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 84 percent done.
PIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
KS ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
PIGN   10000 perm   2 sec   (5319 perm/sec)   p_kst 1.705000e-01   p_cons 7.124000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000131/PIGN.2_2908_10000_0.1705_0.7124_0.8904.png
                gene_name: PIGN
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 85 percent done.
PIGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
Cons ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
PIGT   10000 perm   2 sec   (6525 perm/sec)   p_kst 6.777000e-01   p_cons 4.265000e-01   p_joint 8.706000e-01

Outputting figure to mutsig2_images.part000000000131/PIGT.2_1785_10000_0.6777_0.4265_0.8706.png
                gene_name: PIGT
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 87 percent done.
PIK3R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
Cons ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
PIK3R3   10000 perm   1 sec   (6709 perm/sec)   p_kst 3.373000e-01   p_cons 3.069000e-01   p_joint 5.847000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R3.2_1426_10000_0.3373_0.3069_0.5847.png
                gene_name: PIK3R3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 89 percent done.
PILRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
KS ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
PILRA   10000 perm   1 sec   (6806 perm/sec)   p_kst 5.493000e-01   p_cons 6.038000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000131/PILRA.2_940_10000_0.5493_0.6038_0.5597.png
                gene_name: PILRA
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 90 percent done.
PINX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
KS ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
PINX1   10000 perm   1 sec   (6915 perm/sec)   p_kst 6.470000e-01   p_cons 1.491000e-01   p_joint 2.422000e-01

Outputting figure to mutsig2_images.part000000000131/PINX1.2_1015_10000_0.647_0.1491_0.2422.png
                gene_name: PINX1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 92 percent done.
PIP4K2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
Cons ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
PIP4K2B   10000 perm   2 sec   (6628 perm/sec)   p_kst 4.419000e-01   p_cons 2.018000e-01   p_joint 7.237000e-01

Outputting figure to mutsig2_images.part000000000131/PIP4K2B.2_1291_10000_0.4419_0.2018_0.7237.png
                gene_name: PIP4K2B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 93 percent done.
PIR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
Cons ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
KS ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
PIR   10000 perm   1 sec   (6787 perm/sec)   p_kst 2.834000e-01   p_cons 8.072000e-01   p_joint 4.252000e-01

Outputting figure to mutsig2_images.part000000000131/PIR.2_909_10000_0.2834_0.8072_0.4252.png
                gene_name: PIR
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 95 percent done.
PITPNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.999633e-03	ci left: 9.560775e-01	ci right 9.638516e-01	k: 9601	n:10000
KS ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
PITPNM1   10000 perm   2 sec   (5608 perm/sec)   p_kst 9.904000e-01   p_cons 9.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PITPNM1.2_3827_10000_0.9904_0.9601_1.png
                gene_name: PITPNM1
               theta_stop: 0.0080 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PKDREJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
KS ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
PKDREJ   10000 perm   2 sec   (4695 perm/sec)   p_kst 4.912000e-01   p_cons 6.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKDREJ.2_6766_10000_0.4912_0.6707_1.png
                gene_name: PKDREJ
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PKMYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
Cons ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
KS ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
PKMYT1   10000 perm   2 sec   (6517 perm/sec)   p_kst 7.518000e-01   p_cons 5.589000e-01   p_joint 6.238000e-01

Outputting figure to mutsig2_images.part000000000131/PKMYT1.2_1570_10000_0.7518_0.5589_0.6238.png
                gene_name: PKMYT1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000131
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 131 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 4422317: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000132> was used as the working directory.
Started at Wed Oct 24 18:02:48 2012
Results reported at Wed Oct 24 21:16:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000132.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000132.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 132  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000132.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11789.62 sec.
    Max Memory :      9460 MB
    Max Swap   :     11865 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
132
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 132
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 132: processing genes 11853 - 11942
Calculating significance of each gene.
Using projection method.
11853	PKN2	2.371886e-01
11854	PKN3	7.270815e-01
11855	PKNOX1	1
11856	PKNOX2	6.505933e-01
11857	PKP1	6.919752e-01
11858	PKP2	1
11859	PKP3	9.884822e-01
11860	PKP4	7.507841e-01
11861	PLA1A	4.741291e-01
11862	PLA2G10	1
11863	PLA2G12A	4.871620e-01
11864	PLA2G12B	1.816556e-01
11865	PLA2G15	8.882499e-01
11866	PLA2G16	1
11867	PLA2G1B	6.784189e-01
11868	PLA2G2A	6.081058e-02
11869	PLA2G2C	5.748702e-01
11870	PLA2G2D	1
11871	PLA2G2E	5.972177e-01
11872	PLA2G2F	1.870601e-01
11873	PLA2G3	3.203018e-01
11874	PLA2G4A	2.120234e-01
11875	PLA2G4B	1
11876	PLA2G4C	9.403541e-01
11877	PLA2G4D	7.896006e-01
11878	PLA2G4E	2.887122e-02
11879	PLA2G4F	1
11880	PLA2G5	1
11881	PLA2G6	9.384533e-01
11882	PLA2G7	2.561161e-01
11883	PLA2R1	9.563088e-01
11884	PLAA	9.735999e-01
11885	PLAC1	6.306800e-01
11886	PLAC1L	1.709507e-02
In gene PLAC4 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 185     n = 1	mu =   5.35e-07
11887	PLAC4	8.412422e-02
11888	PLAC8	3.868164e-01
11889	PLAC8L1	1
11890	PLAC9	1
11891	PLAG1	4.188233e-01
11892	PLAGL1	8.043682e-01
11893	PLAGL2	3.269133e-01
11894	PLAT	1
11895	PLAU	9.337259e-01
11896	PLAUR	4.736594e-01
11897	PLB1	9.996969e-01
11898	PLBD1	9.121302e-01
11899	PLBD2	1
11900	PLCB1	7.426436e-01
11901	PLCB2	9.598782e-01
11902	PLCB3	9.812865e-01
11903	PLCB4	3.822640e-01
11904	PLCD1	8.971845e-01
11905	PLCD3	7.074810e-01
11906	PLCD4	1
11907	PLCE1	9.790005e-01
11908	PLCG1	8.848483e-01
11909	PLCG2	4.610871e-01
11910	PLCH1	7.848835e-01
11911	PLCH2	6.754812e-01
11912	PLCL1	9.563150e-01
11913	PLCL2	9.968953e-01
11914	PLCXD1	8.729423e-01
11915	PLCXD2	6.925304e-01
11916	PLCXD3	5.134055e-01
11917	PLCZ1	6.836941e-01
11918	PLD1	5.850033e-01
11919	PLD2	6.554090e-01
11920	PLD3	9.081438e-01
11921	PLD4	1
11922	PLD5	1.162130e-03
11923	PLD6	4.602607e-01
11924	PLDN	1
11925	PLEC	1
11926	PLEK	3.505246e-02
11927	PLEK2	1
11928	PLEKHA1	1
11929	PLEKHA2	9.288120e-01
11930	PLEKHA3	6.113865e-01
11931	PLEKHA4	1
11932	PLEKHA5	9.954234e-01
11933	PLEKHA6	1
11934	PLEKHA7	4.034221e-01
11935	PLEKHA8	7.648171e-01
11936	PLEKHA9	1.913083e-01
11937	PLEKHB1	7.733150e-01
11938	PLEKHB2	1.253094e-01
11939	PLEKHF1	1
11940	PLEKHF2	7.052565e-01
11941	PLEKHG1	9.997407e-01
11942	PLEKHG2	5.783765e-01
Done

Running MutSig 2:
Scatter job 132: processing genes 11853 - 11942
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLEC
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
Cons ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
KS ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
PLEC   10000 perm   4 sec   (2606 perm/sec)   p_kst 3.385000e-01   p_cons 1.107000e-01   p_joint 2.030000e-01

Joint ci ratio: 5.085997e-02	ci left: 2.231418e-01	ci right 2.348371e-01	k: 4579	n:20000
Cons ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
KS ci ratio: 3.914128e-02	ci left: 3.274133e-01	ci right 3.405350e-01	k: 6679	n:20000
PLEC   20000 perm   10 sec   (1955 perm/sec)   p_kst 3.339500e-01   p_cons 1.231500e-01   p_joint 2.289500e-01

Outputting figure to mutsig2_images.part000000000132/PLEC.22_14884_20000_0.33395_0.12315_0.22895.png
                gene_name: PLEC
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
PLCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
Cons ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
KS ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
PLCL1   10000 perm   2 sec   (4318 perm/sec)   p_kst 1.491000e-01   p_cons 1.050000e-02   p_joint 2.600000e-02

Joint ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
Cons ci ratio: 2.652715e-01	ci left: 9.367279e-03	ci right 1.227757e-02	k: 215	n:20000
KS ci ratio: 6.469355e-02	ci left: 1.500591e-01	ci right 1.601414e-01	k: 3101	n:20000
PLCL1   20000 perm   5 sec   (3948 perm/sec)   p_kst 1.550500e-01   p_cons 1.075000e-02   p_joint 3.475000e-02

Joint ci ratio: 1.727866e-01	ci left: 1.540785e-02	ci right 1.835345e-02	k: 505	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 5.286268e-02	ci left: 1.507897e-01	ci right 1.590105e-01	k: 4646	n:30000
PLCL1   30000 perm   8 sec   (3791 perm/sec)   p_kst 1.548667e-01   p_cons 1.256667e-02   p_joint 1.683333e-02

Joint ci ratio: 1.153736e-01	ci left: 2.642943e-02	ci right 2.968957e-02	k: 1121	n:40000
Cons ci ratio: 1.716182e-01	ci left: 1.176925e-02	ci right 1.400230e-02	k: 514	n:40000
KS ci ratio: 4.592094e-02	ci left: 1.505498e-01	ci right 1.576505e-01	k: 6163	n:40000
PLCL1   40000 perm   11 sec   (3687 perm/sec)   p_kst 1.540750e-01   p_cons 1.285000e-02   p_joint 2.802500e-02

Joint ci ratio: 9.613937e-02	ci left: 3.063081e-02	ci right 3.374382e-02	k: 1608	n:50000
Cons ci ratio: 1.560685e-01	ci left: 1.148686e-02	ci right 1.345035e-02	k: 622	n:50000
KS ci ratio: 4.108561e-02	ci left: 1.508464e-01	ci right 1.571939e-01	k: 7700	n:50000
PLCL1   50000 perm   14 sec   (3609 perm/sec)   p_kst 1.540000e-01   p_cons 1.244000e-02   p_joint 3.216000e-02

Joint ci ratio: 8.830312e-02	ci left: 3.039403e-02	ci right 3.321816e-02	k: 1907	n:60000
Cons ci ratio: 1.415720e-01	ci left: 1.172281e-02	ci right 1.352479e-02	k: 756	n:60000
KS ci ratio: 3.756888e-02	ci left: 1.506903e-01	ci right 1.564766e-01	k: 9214	n:60000
PLCL1   60000 perm   17 sec   (3542 perm/sec)   p_kst 1.535667e-01   p_cons 1.260000e-02   p_joint 3.178333e-02

Joint ci ratio: 8.441386e-02	ci left: 2.862273e-02	ci right 3.115930e-02	k: 2091	n:70000
Cons ci ratio: 1.326902e-01	ci left: 1.149661e-02	ci right 1.314419e-02	k: 861	n:70000
KS ci ratio: 3.468079e-02	ci left: 1.516596e-01	ci right 1.570263e-01	k: 10803	n:70000
PLCL1   70000 perm   20 sec   (3483 perm/sec)   p_kst 1.543286e-01   p_cons 1.230000e-02   p_joint 2.987143e-02

Joint ci ratio: 8.895205e-02	ci left: 2.264475e-02	ci right 2.476498e-02	k: 1895	n:80000
Cons ci ratio: 1.245140e-01	ci left: 1.147500e-02	ci right 1.301067e-02	k: 978	n:80000
KS ci ratio: 3.239971e-02	ci left: 1.521632e-01	ci right 1.571869e-01	k: 12373	n:80000
PLCL1   80000 perm   23 sec   (3429 perm/sec)   p_kst 1.546625e-01   p_cons 1.222500e-02   p_joint 2.368750e-02

Joint ci ratio: 8.352456e-02	ci left: 2.289018e-02	ci right 2.489623e-02	k: 2149	n:90000
Cons ci ratio: 1.180116e-01	ci left: 1.139591e-02	ci right 1.283579e-02	k: 1089	n:90000
KS ci ratio: 3.052568e-02	ci left: 1.524866e-01	ci right 1.572245e-01	k: 13936	n:90000
PLCL1   90000 perm   27 sec   (3379 perm/sec)   p_kst 1.548444e-01   p_cons 1.210000e-02   p_joint 2.387778e-02

Joint ci ratio: 8.119014e-02	ci left: 2.185432e-02	ci right 2.371351e-02	k: 2277	n:100000
Cons ci ratio: 1.112654e-01	ci left: 1.157740e-02	ci right 1.295110e-02	k: 1225	n:100000
KS ci ratio: 2.895762e-02	ci left: 1.526228e-01	ci right 1.571172e-01	k: 15486	n:100000
PLCL1   100000 perm   30 sec   (3329 perm/sec)   p_kst 1.548600e-01   p_cons 1.225000e-02   p_joint 2.277000e-02

Joint ci ratio: 8.689724e-02	ci left: 1.737374e-02	ci right 1.896090e-02	k: 1997	n:110000
Cons ci ratio: 1.058335e-01	ci left: 1.166584e-02	ci right 1.297825e-02	k: 1354	n:110000
KS ci ratio: 2.723705e-02	ci left: 1.563011e-01	ci right 1.606260e-01	k: 17430	n:110000
PLCL1   110000 perm   34 sec   (3283 perm/sec)   p_kst 1.584545e-01   p_cons 1.230909e-02   p_joint 1.815455e-02

Joint ci ratio: 7.934719e-02	ci left: 1.914180e-02	ci right 2.073152e-02	k: 2391	n:120000
Cons ci ratio: 1.010232e-01	ci left: 1.176527e-02	ci right 1.302513e-02	k: 1486	n:120000
KS ci ratio: 2.608454e-02	ci left: 1.563217e-01	ci right 1.604615e-01	k: 19006	n:120000
PLCL1   120000 perm   37 sec   (3238 perm/sec)   p_kst 1.583833e-01   p_cons 1.238333e-02   p_joint 1.992500e-02

Joint ci ratio: 7.664783e-02	ci left: 1.896656e-02	ci right 2.048574e-02	k: 2563	n:130000
Cons ci ratio: 9.717969e-02	ci left: 1.176044e-02	ci right 1.296915e-02	k: 1606	n:130000
KS ci ratio: 2.505249e-02	ci left: 1.564956e-01	ci right 1.604735e-01	k: 20602	n:130000
PLCL1   130000 perm   41 sec   (3194 perm/sec)   p_kst 1.584769e-01   p_cons 1.235385e-02   p_joint 1.971538e-02

Outputting figure to mutsig2_images.part000000000132/PLCL1.20_3312_130000_0.15848_0.012354_0.019715.png
                gene_name: PLCL1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 4 percent done.
PLCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
Cons ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
KS ci ratio: 1.379870e-02	ci left: 8.834987e-01	ci right 8.958733e-01	k: 8898	n:10000
PLCB1   10000 perm   2 sec   (4147 perm/sec)   p_kst 8.898000e-01   p_cons 3.104000e-01   p_joint 6.938000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB1.18_3882_10000_0.8898_0.3104_0.6938.png
                gene_name: PLCB1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 5 percent done.
PLCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
Cons ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
KS ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
PLCB4   10000 perm   2 sec   (4062 perm/sec)   p_kst 2.971000e-01   p_cons 2.502000e-01   p_joint 4.530000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB4.16_3769_10000_0.2971_0.2502_0.453.png
                gene_name: PLCB4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 7 percent done.
PLCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
KS ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
PLCE1   10000 perm   3 sec   (3612 perm/sec)   p_kst 1.120000e-02   p_cons 3.173000e-01   p_joint 2.270000e-02

Joint ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
Cons ci ratio: 4.112757e-02	ci left: 3.058799e-01	ci right 3.187747e-01	k: 6246	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
PLCE1   20000 perm   6 sec   (3338 perm/sec)   p_kst 1.040000e-02   p_cons 3.123000e-01   p_joint 1.530000e-02

Joint ci ratio: 1.254912e-01	ci left: 2.952001e-02	ci right 3.350473e-02	k: 944	n:30000
Cons ci ratio: 3.232372e-02	ci left: 3.236170e-01	ci right 3.342829e-01	k: 9868	n:30000
KS ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
PLCE1   30000 perm   9 sec   (3230 perm/sec)   p_kst 1.036667e-02   p_cons 3.289333e-01   p_joint 3.146667e-02

Joint ci ratio: 1.296295e-01	ci left: 2.089945e-02	ci right 2.382047e-02	k: 893	n:40000
Cons ci ratio: 2.787891e-02	ci left: 3.261393e-01	ci right 3.353853e-01	k: 13230	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
PLCE1   40000 perm   13 sec   (3157 perm/sec)   p_kst 1.030000e-02   p_cons 3.307500e-01   p_joint 2.232500e-02

Joint ci ratio: 1.072129e-01	ci left: 2.464219e-02	ci right 2.745320e-02	k: 1301	n:50000
Cons ci ratio: 2.502123e-02	ci left: 3.251209e-01	ci right 3.333789e-01	k: 16462	n:50000
KS ci ratio: 1.753149e-01	ci left: 9.031614e-03	ci right 1.078599e-02	k: 494	n:50000
PLCE1   50000 perm   16 sec   (3100 perm/sec)   p_kst 9.880000e-03   p_cons 3.292400e-01   p_joint 2.602000e-02

Joint ci ratio: 1.172661e-01	ci left: 1.721017e-02	ci right 1.937012e-02	k: 1096	n:60000
Cons ci ratio: 2.285029e-02	ci left: 3.253070e-01	ci right 3.328429e-01	k: 19744	n:60000
KS ci ratio: 1.612787e-01	ci left: 8.963225e-03	ci right 1.055140e-02	k: 584	n:60000
PLCE1   60000 perm   20 sec   (3046 perm/sec)   p_kst 9.733333e-03   p_cons 3.290667e-01   p_joint 1.826667e-02

Joint ci ratio: 1.033742e-01	ci left: 1.908706e-02	ci right 2.118156e-02	k: 1408	n:70000
Cons ci ratio: 2.116541e-02	ci left: 3.253769e-01	ci right 3.323516e-01	k: 23020	n:70000
KS ci ratio: 1.516319e-01	ci left: 8.739648e-03	ci right 1.018717e-02	k: 661	n:70000
PLCE1   70000 perm   23 sec   (2997 perm/sec)   p_kst 9.442857e-03   p_cons 3.288571e-01   p_joint 2.011429e-02

Joint ci ratio: 8.632964e-02	ci left: 2.403926e-02	ci right 2.622037e-02	k: 2009	n:80000
Cons ci ratio: 2.049521e-02	ci left: 3.105601e-01	ci right 3.170034e-01	k: 25102	n:80000
KS ci ratio: 1.418929e-01	ci left: 8.779090e-03	ci right 1.013184e-02	k: 755	n:80000
PLCE1   80000 perm   27 sec   (2952 perm/sec)   p_kst 9.437500e-03   p_cons 3.137750e-01   p_joint 2.511250e-02

Joint ci ratio: 9.606026e-02	ci left: 1.729328e-02	ci right 1.904908e-02	k: 1634	n:90000
Cons ci ratio: 1.929164e-02	ci left: 3.114448e-01	ci right 3.175227e-01	k: 28303	n:90000
KS ci ratio: 1.332649e-01	ci left: 8.887289e-03	ci right 1.016684e-02	k: 856	n:90000
PLCE1   90000 perm   31 sec   (2908 perm/sec)   p_kst 9.511111e-03   p_cons 3.144778e-01   p_joint 1.815556e-02

Joint ci ratio: 8.764853e-02	ci left: 1.874979e-02	ci right 2.047823e-02	k: 1960	n:100000
Cons ci ratio: 1.826940e-02	ci left: 3.123608e-01	ci right 3.181300e-01	k: 31524	n:100000
KS ci ratio: 1.251209e-01	ci left: 9.111484e-03	ci right 1.033721e-02	k: 971	n:100000
PLCE1   100000 perm   35 sec   (2869 perm/sec)   p_kst 9.710000e-03   p_cons 3.152400e-01   p_joint 1.960000e-02

Joint ci ratio: 8.376989e-02	ci left: 1.869991e-02	ci right 2.034374e-02	k: 2146	n:110000
Cons ci ratio: 1.741938e-02	ci left: 3.124911e-01	ci right 3.179914e-01	k: 34676	n:110000
KS ci ratio: 1.194788e-01	ci left: 9.111576e-03	ci right 1.027813e-02	k: 1065	n:110000
PLCE1   110000 perm   39 sec   (2833 perm/sec)   p_kst 9.681818e-03   p_cons 3.152364e-01   p_joint 1.950909e-02

Joint ci ratio: 8.409899e-02	ci left: 1.703491e-02	ci right 1.853853e-02	k: 2133	n:120000
Cons ci ratio: 1.669597e-02	ci left: 3.121393e-01	ci right 3.174030e-01	k: 37772	n:120000
KS ci ratio: 1.145869e-01	ci left: 9.104593e-03	ci right 1.021930e-02	k: 1158	n:120000
PLCE1   120000 perm   43 sec   (2797 perm/sec)   p_kst 9.650000e-03   p_cons 3.147667e-01   p_joint 1.777500e-02

Joint ci ratio: 8.775984e-02	ci left: 1.445159e-02	ci right 1.578555e-02	k: 1964	n:130000
Cons ci ratio: 1.603061e-02	ci left: 3.125213e-01	ci right 3.175793e-01	k: 40956	n:130000
KS ci ratio: 1.100289e-01	ci left: 9.136921e-03	ci right 1.020820e-02	k: 1256	n:130000
PLCE1   130000 perm   47 sec   (2766 perm/sec)   p_kst 9.661538e-03   p_cons 3.150462e-01   p_joint 1.510769e-02

Joint ci ratio: 7.721059e-02	ci left: 1.738007e-02	ci right 1.878285e-02	k: 2530	n:140000
Cons ci ratio: 1.546323e-02	ci left: 3.121750e-01	ci right 3.170470e-01	k: 44045	n:140000
KS ci ratio: 1.059354e-01	ci left: 9.172340e-03	ci right 1.020526e-02	k: 1355	n:140000
PLCE1   140000 perm   51 sec   (2735 perm/sec)   p_kst 9.678571e-03   p_cons 3.146071e-01   p_joint 1.807143e-02

Joint ci ratio: 7.566207e-02	ci left: 1.691440e-02	ci right 1.825101e-02	k: 2636	n:150000
Cons ci ratio: 1.493085e-02	ci left: 3.124899e-01	ci right 3.171973e-01	k: 47226	n:150000
KS ci ratio: 1.024808e-01	ci left: 9.164690e-03	ci right 1.016107e-02	k: 1448	n:150000
PLCE1   150000 perm   55 sec   (2706 perm/sec)   p_kst 9.653333e-03   p_cons 3.148400e-01   p_joint 1.757333e-02

Joint ci ratio: 7.096709e-02	ci left: 1.804799e-02	ci right 1.938203e-02	k: 2993	n:160000
Cons ci ratio: 1.444553e-02	ci left: 3.128988e-01	ci right 3.174579e-01	k: 50428	n:160000
KS ci ratio: 9.911663e-02	ci left: 9.201150e-03	ci right 1.016674e-02	k: 1548	n:160000
PLCE1   160000 perm   60 sec   (2676 perm/sec)   p_kst 9.675000e-03   p_cons 3.151750e-01   p_joint 1.870625e-02

Outputting figure to mutsig2_images.part000000000132/PLCE1.14_7319_160000_0.009675_0.31517_0.018706.png
                gene_name: PLCE1
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 9 percent done.
PLB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
PLB1   10000 perm   2 sec   (4430 perm/sec)   p_kst 6.298000e-01   p_cons 4.618000e-01   p_joint 5.139000e-01

Outputting figure to mutsig2_images.part000000000132/PLB1.13_4642_10000_0.6298_0.4618_0.5139.png
                gene_name: PLB1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 11 percent done.
PLCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
Cons ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
KS ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
PLCH1   10000 perm   2 sec   (4418 perm/sec)   p_kst 7.180000e-02   p_cons 1.098000e-01   p_joint 1.207000e-01

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
PLCH1   20000 perm   5 sec   (4027 perm/sec)   p_kst 7.190000e-02   p_cons 1.137000e-01   p_joint 8.525000e-02

Outputting figure to mutsig2_images.part000000000132/PLCH1.13_5189_20000_0.0719_0.1137_0.08525.png
                gene_name: PLCH1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 12 percent done.
PLA2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
PLA2R1   10000 perm   2 sec   (4218 perm/sec)   p_kst 1.073000e-01   p_cons 8.771000e-01   p_joint 1.758000e-01

Joint ci ratio: 6.300704e-02	ci left: 1.570167e-01	ci right 1.672817e-01	k: 3242	n:20000
Cons ci ratio: 1.024168e-02	ci left: 8.753144e-01	ci right 8.843748e-01	k: 17598	n:20000
KS ci ratio: 8.146729e-02	ci left: 9.950760e-02	ci right 1.080080e-01	k: 2074	n:20000
PLA2R1   20000 perm   5 sec   (3847 perm/sec)   p_kst 1.037000e-01   p_cons 8.799000e-01   p_joint 1.621000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2R1.11_4520_20000_0.1037_0.8799_0.1621.png
                gene_name: PLA2R1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 14 percent done.
PLD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
KS ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
PLD5   10000 perm   2 sec   (5132 perm/sec)   p_kst 6.260000e-01   p_cons 3.674000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000132/PLD5.11_1371_10000_0.626_0.3674_0.6531.png
                gene_name: PLD5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 16 percent done.
PLEKHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
PLEKHA7   10000 perm   2 sec   (4654 perm/sec)   p_kst 1.499000e-01   p_cons 3.854000e-01   p_joint 1.912000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA7.11_3458_10000_0.1499_0.3854_0.1912.png
                gene_name: PLEKHA7
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 18 percent done.
PLA2G4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
PLA2G4A   10000 perm   2 sec   (5348 perm/sec)   p_kst 7.103000e-01   p_cons 3.652000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G4A.10_2318_10000_0.7103_0.3652_1.png
                gene_name: PLA2G4A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PLCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.536454e-02	ci left: 4.176764e-01	ci right 4.371659e-01	k: 4274	n:10000
Cons ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
KS ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
PLCL2   10000 perm   2 sec   (4571 perm/sec)   p_kst 4.859000e-01   p_cons 2.403000e-01   p_joint 4.274000e-01

Outputting figure to mutsig2_images.part000000000132/PLCL2.10_3402_10000_0.4859_0.2403_0.4274.png
                gene_name: PLCL2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 21 percent done.
PKP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
Cons ci ratio: 5.134966e-02	ci left: 3.586369e-01	ci right 3.776400e-01	k: 3681	n:10000
KS ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
PKP2   10000 perm   2 sec   (5252 perm/sec)   p_kst 7.057000e-01   p_cons 3.681000e-01   p_joint 6.296000e-01

Outputting figure to mutsig2_images.part000000000132/PKP2.9_2702_10000_0.7057_0.3681_0.6296.png
                gene_name: PKP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 23 percent done.
PLCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
PLCG2   10000 perm   2 sec   (4518 perm/sec)   p_kst 1.701000e-01   p_cons 9.350000e-02   p_joint 2.082000e-01

Joint ci ratio: 6.203928e-02	ci left: 1.612127e-01	ci right 1.715844e-01	k: 3327	n:20000
Cons ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
KS ci ratio: 6.092267e-02	ci left: 1.662495e-01	ci right 1.767461e-01	k: 3429	n:20000
PLCG2   20000 perm   5 sec   (4141 perm/sec)   p_kst 1.714500e-01   p_cons 9.625000e-02   p_joint 1.663500e-01

Outputting figure to mutsig2_images.part000000000132/PLCG2.9_3926_20000_0.17145_0.09625_0.16635.png
                gene_name: PLCG2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 25 percent done.
PLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
Cons ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
KS ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
PLD1   10000 perm   2 sec   (4652 perm/sec)   p_kst 1.870000e-02   p_cons 6.090000e-01   p_joint 6.430000e-02

Joint ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
Cons ci ratio: 2.208791e-02	ci left: 6.048045e-01	ci right 6.183631e-01	k: 12232	n:20000
KS ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
PLD1   20000 perm   5 sec   (4247 perm/sec)   p_kst 2.015000e-02   p_cons 6.116000e-01   p_joint 4.140000e-02

Joint ci ratio: 7.582484e-02	ci left: 7.868996e-02	ci right 8.492464e-02	k: 2453	n:30000
Cons ci ratio: 1.799455e-02	ci left: 6.071269e-01	ci right 6.181846e-01	k: 18380	n:30000
KS ci ratio: 1.616122e-01	ci left: 1.767718e-02	ci right 2.081690e-02	k: 576	n:30000
PLD1   30000 perm   7 sec   (4058 perm/sec)   p_kst 1.920000e-02   p_cons 6.126667e-01   p_joint 8.176667e-02

Joint ci ratio: 9.363629e-02	ci left: 4.000620e-02	ci right 4.396065e-02	k: 1678	n:40000
Cons ci ratio: 1.555406e-02	ci left: 6.087826e-01	ci right 6.183509e-01	k: 24543	n:40000
KS ci ratio: 1.405518e-01	ci left: 1.773286e-02	ci right 2.043760e-02	k: 762	n:40000
PLD1   40000 perm   10 sec   (3932 perm/sec)   p_kst 1.905000e-02   p_cons 6.135750e-01   p_joint 4.195000e-02

Joint ci ratio: 8.938522e-02	ci left: 3.538196e-02	ci right 3.871207e-02	k: 1851	n:50000
Cons ci ratio: 1.395418e-02	ci left: 6.078526e-01	ci right 6.164144e-01	k: 30607	n:50000
KS ci ratio: 1.252958e-01	ci left: 1.799576e-02	ci right 2.042051e-02	k: 959	n:50000
PLD1   50000 perm   13 sec   (3840 perm/sec)   p_kst 1.918000e-02   p_cons 6.121400e-01   p_joint 3.702000e-02

Joint ci ratio: 7.560409e-02	ci left: 4.125972e-02	ci right 4.451802e-02	k: 2572	n:60000
Cons ci ratio: 1.297633e-02	ci left: 5.993890e-01	ci right 6.072343e-01	k: 36199	n:60000
KS ci ratio: 1.156130e-01	ci left: 1.771204e-02	ci right 1.990152e-02	k: 1127	n:60000
PLD1   60000 perm   16 sec   (3763 perm/sec)   p_kst 1.878333e-02   p_cons 6.033167e-01   p_joint 4.286667e-02

Joint ci ratio: 7.168189e-02	ci left: 3.950086e-02	ci right 4.245163e-02	k: 2867	n:70000
Cons ci ratio: 1.198804e-02	ci left: 6.007090e-01	ci right 6.079680e-01	k: 42304	n:70000
KS ci ratio: 1.067069e-01	ci left: 1.790408e-02	ci right 1.993608e-02	k: 1323	n:70000
PLD1   70000 perm   19 sec   (3695 perm/sec)   p_kst 1.890000e-02   p_cons 6.043429e-01   p_joint 4.095714e-02

Joint ci ratio: 6.360591e-02	ci left: 4.388150e-02	ci right 4.677659e-02	k: 3625	n:80000
Cons ci ratio: 1.124033e-02	ci left: 5.998124e-01	ci right 6.066051e-01	k: 48257	n:80000
KS ci ratio: 1.003282e-01	ci left: 1.778473e-02	ci right 1.967540e-02	k: 1497	n:80000
PLD1   80000 perm   22 sec   (3630 perm/sec)   p_kst 1.871250e-02   p_cons 6.032125e-01   p_joint 4.531250e-02

Joint ci ratio: 6.078640e-02	ci left: 4.282252e-02	ci right 4.551807e-02	k: 3974	n:90000
Cons ci ratio: 1.058597e-02	ci left: 6.005289e-01	ci right 6.069310e-01	k: 54336	n:90000
KS ci ratio: 9.502948e-02	ci left: 1.767304e-02	ci right 1.944707e-02	k: 1669	n:90000
PLD1   90000 perm   25 sec   (3573 perm/sec)   p_kst 1.854444e-02   p_cons 6.037333e-01   p_joint 4.415556e-02

Outputting figure to mutsig2_images.part000000000132/PLD1.9_3329_90000_0.018544_0.60373_0.044156.png
                gene_name: PLD1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 27 percent done.
PKP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.867731e-02	ci left: 3.837082e-01	ci right 4.029540e-01	k: 3933	n:10000
Cons ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
KS ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
PKP4   10000 perm   2 sec   (4599 perm/sec)   p_kst 2.829000e-01   p_cons 5.581000e-01   p_joint 3.933000e-01

Outputting figure to mutsig2_images.part000000000132/PKP4.8_3663_10000_0.2829_0.5581_0.3933.png
                gene_name: PKP4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 29 percent done.
PLA2G4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
PLA2G4E   10000 perm   2 sec   (5646 perm/sec)   p_kst 1.000000e-04   p_cons 9.748000e-01   p_joint 1.340000e-02

Joint ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
Cons ci ratio: 4.541570e-03	ci left: 9.715953e-01	ci right 9.760655e-01	k: 19478	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
PLA2G4E   20000 perm   4 sec   (5064 perm/sec)   p_kst 5.000000e-05   p_cons 9.739000e-01   p_joint 6.200000e-03

Joint ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
Cons ci ratio: 3.719240e-03	ci left: 9.718604e-01	ci right 9.755137e-01	k: 29212	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
PLA2G4E   30000 perm   6 sec   (4822 perm/sec)   p_kst 3.333333e-05   p_cons 9.737333e-01   p_joint 3.900000e-03

Joint ci ratio: 4.378254e-01	ci left: 1.563928e-03	ci right 2.460840e-03	k: 79	n:40000
Cons ci ratio: 3.385518e-03	ci left: 9.693598e-01	ci right 9.726713e-01	k: 38842	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
PLA2G4E   40000 perm   9 sec   (4671 perm/sec)   p_kst 2.500000e-05   p_cons 9.710500e-01   p_joint 1.975000e-03

Joint ci ratio: 3.619763e-01	ci left: 1.917428e-03	ci right 2.781975e-03	k: 116	n:50000
Cons ci ratio: 3.171785e-03	ci left: 9.667474e-01	ci right 9.698380e-01	k: 48416	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
PLA2G4E   50000 perm   11 sec   (4556 perm/sec)   p_kst 2.000000e-05   p_cons 9.683200e-01   p_joint 2.320000e-03

Joint ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
Cons ci ratio: 2.864654e-03	ci left: 9.675479e-01	ci right 9.703398e-01	k: 58138	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
PLA2G4E   60000 perm   13 sec   (4450 perm/sec)   p_kst 1.666667e-05   p_cons 9.689667e-01   p_joint 1.950000e-03

Joint ci ratio: 3.461629e-01	ci left: 1.512706e-03	ci right 2.158284e-03	k: 127	n:70000
Cons ci ratio: 2.661915e-03	ci left: 9.674271e-01	ci right 9.700196e-01	k: 67812	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
PLA2G4E   70000 perm   16 sec   (4355 perm/sec)   p_kst 1.428571e-05   p_cons 9.687429e-01   p_joint 1.814286e-03

Joint ci ratio: 3.422093e-01	ci left: 1.357856e-03	ci right 1.929262e-03	k: 130	n:80000
Cons ci ratio: 2.473665e-03	ci left: 9.679157e-01	ci right 9.703251e-01	k: 77531	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
PLA2G4E   80000 perm   19 sec   (4270 perm/sec)   p_kst 1.250000e-05   p_cons 9.691375e-01   p_joint 1.625000e-03

Joint ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
Cons ci ratio: 2.313190e-03	ci left: 9.684802e-01	ci right 9.707339e-01	k: 87266	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
PLA2G4E   90000 perm   21 sec   (4192 perm/sec)   p_kst 1.111111e-05   p_cons 9.696222e-01   p_joint 1.555556e-03

Joint ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
Cons ci ratio: 2.188940e-03	ci left: 9.686901e-01	ci right 9.708226e-01	k: 96977	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
PLA2G4E   100000 perm   24 sec   (4114 perm/sec)   p_kst 1.000000e-05   p_cons 9.697700e-01   p_joint 1.510000e-03

Joint ci ratio: 3.077560e-01	ci left: 1.246413e-03	ci right 1.707787e-03	k: 161	n:110000
Cons ci ratio: 2.094699e-03	ci left: 9.685222e-01	ci right 9.705620e-01	k: 106651	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
PLA2G4E   110000 perm   27 sec   (4041 perm/sec)   p_kst 9.090909e-06   p_cons 9.695545e-01   p_joint 1.463636e-03

Joint ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
Cons ci ratio: 2.010178e-03	ci left: 9.684269e-01	ci right 9.703837e-01	k: 116330	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
PLA2G4E   120000 perm   30 sec   (3973 perm/sec)   p_kst 8.333333e-06   p_cons 9.694167e-01   p_joint 7.333333e-04

Joint ci ratio: 4.495217e-01	ci left: 4.538128e-04	ci right 7.231252e-04	k: 75	n:130000
Cons ci ratio: 1.864185e-03	ci left: 9.705264e-01	ci right 9.723448e-01	k: 126288	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
PLA2G4E   130000 perm   33 sec   (3910 perm/sec)   p_kst 7.692308e-06   p_cons 9.714462e-01   p_joint 5.769231e-04

Joint ci ratio: 4.409084e-01	ci left: 4.404224e-04	ci right 6.952914e-04	k: 78	n:140000
Cons ci ratio: 1.792763e-03	ci left: 9.706730e-01	ci right 9.724217e-01	k: 136018	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
PLA2G4E   140000 perm   36 sec   (3846 perm/sec)   p_kst 7.142857e-06   p_cons 9.715571e-01   p_joint 5.571429e-04

Joint ci ratio: 4.354365e-01	ci left: 4.229221e-04	ci right 6.637362e-04	k: 80	n:150000
Cons ci ratio: 1.735210e-03	ci left: 9.705981e-01	ci right 9.722903e-01	k: 145718	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
PLA2G4E   150000 perm   40 sec   (3788 perm/sec)   p_kst 6.666667e-06   p_cons 9.714533e-01   p_joint 5.333333e-04

Joint ci ratio: 4.301629e-01	ci left: 4.076266e-04	ci right 6.361083e-04	k: 82	n:160000
Cons ci ratio: 1.675272e-03	ci left: 9.707870e-01	ci right 9.724208e-01	k: 155458	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
PLA2G4E   160000 perm   43 sec   (3731 perm/sec)   p_kst 6.250000e-06   p_cons 9.716125e-01   p_joint 5.125000e-04

Joint ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
Cons ci ratio: 1.624052e-03	ci left: 9.708530e-01	ci right 9.724368e-01	k: 165181	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
PLA2G4E   170000 perm   46 sec   (3676 perm/sec)   p_kst 5.882353e-06   p_cons 9.716529e-01   p_joint 4.176471e-04

Joint ci ratio: 4.555958e-01	ci left: 3.179039e-04	ci right 5.098986e-04	k: 73	n:180000
Cons ci ratio: 1.531933e-03	ci left: 9.724942e-01	ci right 9.739905e-01	k: 175185	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
PLA2G4E   180000 perm   50 sec   (3620 perm/sec)   p_kst 5.555556e-06   p_cons 9.732500e-01   p_joint 4.055556e-04

Joint ci ratio: 4.556008e-01	ci left: 3.011714e-04	ci right 4.830632e-04	k: 73	n:190000
Cons ci ratio: 1.489182e-03	ci left: 9.725813e-01	ci right 9.740358e-01	k: 184930	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
PLA2G4E   190000 perm   53 sec   (3567 perm/sec)   p_kst 5.263158e-06   p_cons 9.733158e-01   p_joint 3.842105e-04

Joint ci ratio: 4.466383e-01	ci left: 2.994081e-04	ci right 4.756039e-04	k: 76	n:200000
Cons ci ratio: 1.449114e-03	ci left: 9.726854e-01	ci right 9.741008e-01	k: 194680	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
PLA2G4E   200000 perm   57 sec   (3517 perm/sec)   p_kst 5.000000e-06   p_cons 9.734000e-01   p_joint 3.800000e-04

Joint ci ratio: 3.938810e-01	ci left: 3.788783e-04	ci right 5.686882e-04	k: 98	n:210000
Cons ci ratio: 1.414445e-03	ci left: 9.726932e-01	ci right 9.740747e-01	k: 204412	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
PLA2G4E   210000 perm   61 sec   (3467 perm/sec)   p_kst 4.761905e-06   p_cons 9.733905e-01   p_joint 4.666667e-04

Joint ci ratio: 3.880470e-01	ci left: 3.739522e-04	ci right 5.578095e-04	k: 101	n:220000
Cons ci ratio: 1.381545e-03	ci left: 9.727237e-01	ci right 9.740729e-01	k: 214149	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
PLA2G4E   220000 perm   64 sec   (3420 perm/sec)   p_kst 4.545455e-06   p_cons 9.734045e-01   p_joint 4.590909e-04

Joint ci ratio: 3.842999e-01	ci left: 3.655444e-04	ci right 5.430935e-04	k: 103	n:230000
Cons ci ratio: 1.349702e-03	ci left: 9.727958e-01	ci right 9.741140e-01	k: 223896	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
PLA2G4E   230000 perm   68 sec   (3374 perm/sec)   p_kst 4.347826e-06   p_cons 9.734609e-01   p_joint 4.478261e-04

Joint ci ratio: 4.000025e-01	ci left: 3.202642e-04	ci right 4.838644e-04	k: 95	n:240000
Cons ci ratio: 1.323900e-03	ci left: 9.727062e-01	ci right 9.739990e-01	k: 233606	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
PLA2G4E   240000 perm   72 sec   (3329 perm/sec)   p_kst 4.166667e-06   p_cons 9.733583e-01   p_joint 3.958333e-04

Joint ci ratio: 3.736744e-01	ci left: 3.580146e-04	ci right 5.259221e-04	k: 109	n:250000
Cons ci ratio: 1.258787e-03	ci left: 9.742509e-01	ci right 9.754820e-01	k: 243718	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
PLA2G4E   250000 perm   76 sec   (3285 perm/sec)   p_kst 4.000000e-06   p_cons 9.748720e-01   p_joint 4.360000e-04

Joint ci ratio: 3.806657e-01	ci left: 3.303177e-04	ci right 4.888596e-04	k: 105	n:260000
Cons ci ratio: 1.236055e-03	ci left: 9.741942e-01	ci right 9.754029e-01	k: 253449	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
PLA2G4E   260000 perm   80 sec   (3243 perm/sec)   p_kst 3.846154e-06   p_cons 9.748038e-01   p_joint 4.038462e-04

Joint ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
Cons ci ratio: 1.210753e-03	ci left: 9.742955e-01	ci right 9.754795e-01	k: 263221	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
PLA2G4E   270000 perm   84 sec   (3201 perm/sec)   p_kst 3.703704e-06   p_cons 9.748926e-01   p_joint 3.962963e-04

Joint ci ratio: 3.670662e-01	ci left: 3.326112e-04	ci right 4.851844e-04	k: 113	n:280000
Cons ci ratio: 1.188493e-03	ci left: 9.743247e-01	ci right 9.754869e-01	k: 272975	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
PLA2G4E   280000 perm   89 sec   (3162 perm/sec)   p_kst 3.571429e-06   p_cons 9.749107e-01   p_joint 4.035714e-04

Joint ci ratio: 4.753133e-01	ci left: 1.790529e-04	ci right 2.933965e-04	k: 67	n:290000
Cons ci ratio: 1.166840e-03	ci left: 9.743765e-01	ci right 9.755175e-01	k: 282736	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
PLA2G4E   290000 perm   93 sec   (3122 perm/sec)   p_kst 3.448276e-06   p_cons 9.749517e-01   p_joint 2.310345e-04

Joint ci ratio: 4.684742e-01	ci left: 1.789580e-04	ci right 2.910708e-04	k: 69	n:300000
Cons ci ratio: 1.146248e-03	ci left: 9.744283e-01	ci right 9.755492e-01	k: 292498	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
PLA2G4E   300000 perm   97 sec   (3084 perm/sec)   p_kst 3.333333e-06   p_cons 9.749933e-01   p_joint 2.300000e-04

Joint ci ratio: 4.587465e-01	ci left: 1.817319e-04	ci right 2.924818e-04	k: 72	n:310000
Cons ci ratio: 1.127378e-03	ci left: 9.744476e-01	ci right 9.755500e-01	k: 302251	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
PLA2G4E   310000 perm   102 sec   (3048 perm/sec)   p_kst 3.225806e-06   p_cons 9.750032e-01   p_joint 2.322581e-04

Joint ci ratio: 4.556373e-01	ci left: 1.788177e-04	ci right 2.868245e-04	k: 73	n:320000
Cons ci ratio: 1.108698e-03	ci left: 9.744974e-01	ci right 9.755815e-01	k: 312014	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
PLA2G4E   320000 perm   106 sec   (3011 perm/sec)   p_kst 3.125000e-06   p_cons 9.750437e-01   p_joint 2.281250e-04

Joint ci ratio: 4.496024e-01	ci left: 1.787685e-04	ci right 2.848801e-04	k: 75	n:330000
Cons ci ratio: 1.091526e-03	ci left: 9.745167e-01	ci right 9.755840e-01	k: 321768	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
PLA2G4E   330000 perm   111 sec   (2977 perm/sec)   p_kst 3.030303e-06   p_cons 9.750545e-01   p_joint 2.272727e-04

Joint ci ratio: 4.496039e-01	ci left: 1.735105e-04	ci right 2.765015e-04	k: 75	n:340000
Cons ci ratio: 1.075258e-03	ci left: 9.745291e-01	ci right 9.755804e-01	k: 331520	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
PLA2G4E   340000 perm   116 sec   (2944 perm/sec)   p_kst 2.941176e-06   p_cons 9.750588e-01   p_joint 2.205882e-04

Joint ci ratio: 4.438025e-01	ci left: 1.736243e-04	ci right 2.749547e-04	k: 77	n:350000
Cons ci ratio: 1.058949e-03	ci left: 9.745755e-01	ci right 9.756109e-01	k: 341284	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
PLA2G4E   350000 perm   120 sec   (2909 perm/sec)   p_kst 2.857143e-06   p_cons 9.750971e-01   p_joint 2.200000e-04

Joint ci ratio: 4.409855e-01	ci left: 1.712697e-04	ci right 2.704025e-04	k: 78	n:360000
Cons ci ratio: 1.045328e-03	ci left: 9.745269e-01	ci right 9.755488e-01	k: 351015	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
PLA2G4E   360000 perm   125 sec   (2877 perm/sec)   p_kst 2.777778e-06   p_cons 9.750417e-01   p_joint 2.166667e-04

Joint ci ratio: 4.382213e-01	ci left: 1.690442e-04	ci right 2.660945e-04	k: 79	n:370000
Cons ci ratio: 1.031243e-03	ci left: 9.745273e-01	ci right 9.755355e-01	k: 360763	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
PLA2G4E   370000 perm   130 sec   (2846 perm/sec)   p_kst 2.702703e-06   p_cons 9.750351e-01   p_joint 2.135135e-04

Joint ci ratio: 4.302283e-01	ci left: 1.716273e-04	ci right 2.678447e-04	k: 82	n:380000
Cons ci ratio: 1.018261e-03	ci left: 9.745013e-01	ci right 9.754967e-01	k: 370501	n:380000
KS ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
PLA2G4E   380000 perm   135 sec   (2814 perm/sec)   p_kst 5.263158e-06   p_cons 9.750026e-01   p_joint 2.157895e-04

Joint ci ratio: 4.276605e-01	ci left: 1.695138e-04	ci right 2.638163e-04	k: 83	n:390000
Cons ci ratio: 1.005227e-03	ci left: 9.745026e-01	ci right 9.754852e-01	k: 380249	n:390000
KS ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
PLA2G4E   390000 perm   140 sec   (2782 perm/sec)   p_kst 5.128205e-06   p_cons 9.749974e-01   p_joint 2.128205e-04

Joint ci ratio: 3.939256e-01	ci left: 1.989072e-04	ci right 2.985685e-04	k: 98	n:400000
Cons ci ratio: 1.052878e-03	ci left: 9.714387e-01	ci right 9.724645e-01	k: 388782	n:400000
KS ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
PLA2G4E   400000 perm   145 sec   (2752 perm/sec)   p_kst 7.500000e-06   p_cons 9.719550e-01   p_joint 2.450000e-04

Joint ci ratio: 3.862001e-01	ci left: 2.028552e-04	ci right 3.019945e-04	k: 102	n:410000
Cons ci ratio: 1.038912e-03	ci left: 9.715003e-01	ci right 9.725125e-01	k: 398524	n:410000
KS ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
PLA2G4E   410000 perm   151 sec   (2722 perm/sec)   p_kst 7.317073e-06   p_cons 9.720098e-01   p_joint 2.487805e-04

Joint ci ratio: 3.789120e-01	ci left: 2.066333e-04	ci right 3.052394e-04	k: 106	n:420000
Cons ci ratio: 1.025889e-03	ci left: 9.715374e-01	ci right 9.725370e-01	k: 408257	n:420000
KS ci ratio: 1.959988e+00	ci left: 1.473031e-06	ci right 2.087432e-05	k: 3	n:420000
PLA2G4E   420000 perm   156 sec   (2694 perm/sec)   p_kst 7.142857e-06   p_cons 9.720405e-01   p_joint 2.523810e-04

Joint ci ratio: 3.754199e-01	ci left: 2.060381e-04	ci right 3.032310e-04	k: 108	n:430000
Cons ci ratio: 1.013733e-03	ci left: 9.715518e-01	ci right 9.725395e-01	k: 417981	n:430000
KS ci ratio: 1.959989e+00	ci left: 1.438775e-06	ci right 2.038887e-05	k: 3	n:430000
PLA2G4E   430000 perm   161 sec   (2667 perm/sec)   p_kst 6.976744e-06   p_cons 9.720488e-01   p_joint 2.511628e-04

Joint ci ratio: 3.880924e-01	ci left: 1.869723e-04	ci right 2.789116e-04	k: 101	n:440000
Cons ci ratio: 1.003549e-03	ci left: 9.714808e-01	ci right 9.724584e-01	k: 427668	n:440000
KS ci ratio: 1.959989e+00	ci left: 1.406075e-06	ci right 1.992549e-05	k: 3	n:440000
PLA2G4E   440000 perm   167 sec   (2638 perm/sec)   p_kst 6.818182e-06   p_cons 9.719727e-01   p_joint 2.295455e-04

Joint ci ratio: 3.862044e-01	ci left: 1.848232e-04	ci right 2.751512e-04	k: 102	n:450000
Cons ci ratio: 9.912716e-04	ci left: 9.715452e-01	ci right 9.725109e-01	k: 437414	n:450000
KS ci ratio: 1.959989e+00	ci left: 1.374829e-06	ci right 1.948270e-05	k: 3	n:450000
PLA2G4E   450000 perm   172 sec   (2611 perm/sec)   p_kst 6.666667e-06   p_cons 9.720311e-01   p_joint 2.266667e-04

Joint ci ratio: 3.843438e-01	ci left: 1.827686e-04	ci right 2.715532e-04	k: 103	n:460000
Cons ci ratio: 9.804883e-04	ci left: 9.715477e-01	ci right 9.725029e-01	k: 447133	n:460000
KS ci ratio: 1.959989e+00	ci left: 1.344941e-06	ci right 1.905917e-05	k: 3	n:460000
PLA2G4E   460000 perm   178 sec   (2585 perm/sec)   p_kst 6.521739e-06   p_cons 9.720283e-01   p_joint 2.239130e-04

Joint ci ratio: 3.843447e-01	ci left: 1.788799e-04	ci right 2.657756e-04	k: 103	n:470000
Cons ci ratio: 9.705427e-04	ci left: 9.715222e-01	ci right 9.724677e-01	k: 456839	n:470000
KS ci ratio: 1.959990e+00	ci left: 1.316326e-06	ci right 1.865366e-05	k: 3	n:470000
PLA2G4E   470000 perm   184 sec   (2556 perm/sec)   p_kst 6.382979e-06   p_cons 9.719979e-01   p_joint 2.191489e-04

Joint ci ratio: 3.771593e-01	ci left: 1.826891e-04	ci right 2.693657e-04	k: 107	n:480000
Cons ci ratio: 9.608191e-04	ci left: 9.715021e-01	ci right 9.724380e-01	k: 466547	n:480000
KS ci ratio: 1.959990e+00	ci left: 1.288902e-06	ci right 1.826504e-05	k: 3	n:480000
PLA2G4E   480000 perm   190 sec   (2531 perm/sec)   p_kst 6.250000e-06   p_cons 9.719729e-01   p_joint 2.229167e-04

Joint ci ratio: 3.789189e-01	ci left: 1.771137e-04	ci right 2.616348e-04	k: 106	n:490000
Cons ci ratio: 9.510965e-04	ci left: 9.714993e-01	ci right 9.724257e-01	k: 476263	n:490000
KS ci ratio: 1.959990e+00	ci left: 1.262598e-06	ci right 1.789229e-05	k: 3	n:490000
PLA2G4E   490000 perm   195 sec   (2507 perm/sec)   p_kst 6.122449e-06   p_cons 9.719653e-01   p_joint 2.163265e-04

Joint ci ratio: 3.754266e-01	ci left: 1.771922e-04	ci right 2.607796e-04	k: 108	n:500000
Cons ci ratio: 9.411448e-04	ci left: 9.715269e-01	ci right 9.724436e-01	k: 485994	n:500000
KS ci ratio: 1.959990e+00	ci left: 1.237346e-06	ci right 1.753445e-05	k: 3	n:500000
PLA2G4E   500000 perm   201 sec   (2482 perm/sec)   p_kst 6.000000e-06   p_cons 9.719880e-01   p_joint 2.160000e-04

Joint ci ratio: 3.807041e-01	ci left: 1.683944e-04	ci right 2.492277e-04	k: 105	n:510000
Cons ci ratio: 9.310284e-04	ci left: 9.715811e-01	ci right 9.724880e-01	k: 495739	n:510000
KS ci ratio: 1.959990e+00	ci left: 1.213084e-06	ci right 1.719063e-05	k: 3	n:510000
PLA2G4E   510000 perm   208 sec   (2456 perm/sec)   p_kst 5.882353e-06   p_cons 9.720373e-01   p_joint 2.058824e-04

Joint ci ratio: 3.771626e-01	ci left: 1.686358e-04	ci right 2.486457e-04	k: 107	n:520000
Cons ci ratio: 9.226313e-04	ci left: 9.715499e-01	ci right 9.724486e-01	k: 505441	n:520000
KS ci ratio: 1.959991e+00	ci left: 1.189756e-06	ci right 1.686005e-05	k: 3	n:520000
PLA2G4E   520000 perm   214 sec   (2432 perm/sec)   p_kst 5.769231e-06   p_cons 9.720019e-01   p_joint 2.057692e-04

Joint ci ratio: 3.754289e-01	ci left: 1.671623e-04	ci right 2.460188e-04	k: 108	n:530000
Cons ci ratio: 9.137908e-04	ci left: 9.715599e-01	ci right 9.724500e-01	k: 515164	n:530000
KS ci ratio: 1.959991e+00	ci left: 1.167307e-06	ci right 1.654193e-05	k: 3	n:530000
PLA2G4E   530000 perm   220 sec   (2410 perm/sec)   p_kst 5.660377e-06   p_cons 9.720075e-01   p_joint 2.037736e-04

Joint ci ratio: 3.959435e-01	ci left: 1.456699e-04	ci right 2.191286e-04	k: 97	n:540000
Cons ci ratio: 9.060619e-04	ci left: 9.715173e-01	ci right 9.723998e-01	k: 524859	n:540000
KS ci ratio: 1.959991e+00	ci left: 1.145691e-06	ci right 1.623560e-05	k: 3	n:540000
PLA2G4E   540000 perm   226 sec   (2386 perm/sec)   p_kst 5.555556e-06   p_cons 9.719611e-01   p_joint 1.796296e-04

Joint ci ratio: 4.000480e-01	ci left: 1.397489e-04	ci right 2.111461e-04	k: 95	n:550000
Cons ci ratio: 8.983140e-04	ci left: 9.714892e-01	ci right 9.723640e-01	k: 534561	n:550000
KS ci ratio: 1.959991e+00	ci left: 1.124860e-06	ci right 1.594041e-05	k: 3	n:550000
PLA2G4E   550000 perm   233 sec   (2364 perm/sec)   p_kst 5.454545e-06   p_cons 9.719291e-01   p_joint 1.727273e-04

Joint ci ratio: 4.131707e-01	ci left: 1.276346e-04	ci right 1.955717e-04	k: 89	n:560000
Cons ci ratio: 8.914880e-04	ci left: 9.714171e-01	ci right 9.722852e-01	k: 544238	n:560000
KS ci ratio: 1.959991e+00	ci left: 1.104773e-06	ci right 1.565576e-05	k: 3	n:560000
PLA2G4E   560000 perm   239 sec   (2343 perm/sec)   p_kst 5.357143e-06   p_cons 9.718536e-01   p_joint 1.589286e-04

Joint ci ratio: 4.131713e-01	ci left: 1.253953e-04	ci right 1.921407e-04	k: 89	n:570000
Cons ci ratio: 8.834497e-04	ci left: 9.714324e-01	ci right 9.722927e-01	k: 553963	n:570000
KS ci ratio: 1.959991e+00	ci left: 1.085391e-06	ci right 1.538110e-05	k: 3	n:570000
PLA2G4E   570000 perm   246 sec   (2321 perm/sec)   p_kst 5.263158e-06   p_cons 9.718649e-01   p_joint 1.561404e-04

Joint ci ratio: 4.178413e-01	ci left: 1.201455e-04	ci right 1.850212e-04	k: 87	n:580000
Cons ci ratio: 8.756801e-04	ci left: 9.714437e-01	ci right 9.722964e-01	k: 563686	n:580000
KS ci ratio: 1.959992e+00	ci left: 1.066677e-06	ci right 1.511591e-05	k: 3	n:580000
PLA2G4E   580000 perm   252 sec   (2301 perm/sec)   p_kst 5.172414e-06   p_cons 9.718724e-01   p_joint 1.500000e-04

Joint ci ratio: 4.154875e-01	ci left: 1.196264e-04	ci right 1.837569e-04	k: 88	n:590000
Cons ci ratio: 8.684079e-04	ci left: 9.714359e-01	ci right 9.722815e-01	k: 573398	n:590000
KS ci ratio: 1.959992e+00	ci left: 1.048598e-06	ci right 1.485971e-05	k: 3	n:590000
PLA2G4E   590000 perm   259 sec   (2280 perm/sec)   p_kst 5.084746e-06   p_cons 9.718610e-01   p_joint 1.491525e-04

Joint ci ratio: 4.131729e-01	ci left: 1.191255e-04	ci right 1.825338e-04	k: 89	n:600000
Cons ci ratio: 8.616810e-04	ci left: 9.714049e-01	ci right 9.722439e-01	k: 583096	n:600000
KS ci ratio: 1.959992e+00	ci left: 1.031121e-06	ci right 1.461205e-05	k: 3	n:600000
PLA2G4E   600000 perm   266 sec   (2259 perm/sec)   p_kst 5.000000e-06   p_cons 9.718267e-01   p_joint 1.483333e-04

Joint ci ratio: 4.154885e-01	ci left: 1.157041e-04	ci right 1.777322e-04	k: 88	n:610000
Cons ci ratio: 8.542115e-04	ci left: 9.714327e-01	ci right 9.722645e-01	k: 592829	n:610000
KS ci ratio: 1.959992e+00	ci left: 1.014218e-06	ci right 1.437251e-05	k: 3	n:610000
PLA2G4E   610000 perm   272 sec   (2240 perm/sec)   p_kst 4.918033e-06   p_cons 9.718508e-01   p_joint 1.442623e-04

Joint ci ratio: 4.131740e-01	ci left: 1.152827e-04	ci right 1.766457e-04	k: 89	n:620000
Cons ci ratio: 8.475069e-04	ci left: 9.714223e-01	ci right 9.722475e-01	k: 602539	n:620000
KS ci ratio: 1.959992e+00	ci left: 9.978594e-07	ci right 1.414070e-05	k: 3	n:620000
PLA2G4E   620000 perm   279 sec   (2220 perm/sec)   p_kst 4.838710e-06   p_cons 9.718371e-01   p_joint 1.435484e-04

Joint ci ratio: 4.108977e-01	ci left: 1.148755e-04	ci right 1.755928e-04	k: 90	n:630000
Cons ci ratio: 8.403479e-04	ci left: 9.714522e-01	ci right 9.722704e-01	k: 612274	n:630000
KS ci ratio: 1.959992e+00	ci left: 9.820203e-07	ci right 1.391624e-05	k: 3	n:630000
PLA2G4E   630000 perm   286 sec   (2201 perm/sec)   p_kst 4.761905e-06   p_cons 9.718635e-01   p_joint 1.428571e-04

Joint ci ratio: 4.064552e-01	ci left: 1.158843e-04	ci right 1.762937e-04	k: 92	n:640000
Cons ci ratio: 8.335096e-04	ci left: 9.714717e-01	ci right 9.722833e-01	k: 622003	n:640000
KS ci ratio: 1.959992e+00	ci left: 9.666762e-07	ci right 1.369880e-05	k: 3	n:640000
PLA2G4E   640000 perm   293 sec   (2183 perm/sec)   p_kst 4.687500e-06   p_cons 9.718797e-01   p_joint 1.437500e-04

Joint ci ratio: 4.131754e-01	ci left: 1.099619e-04	ci right 1.684930e-04	k: 89	n:650000
Cons ci ratio: 8.275335e-04	ci left: 9.714443e-01	ci right 9.722500e-01	k: 631702	n:650000
KS ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
PLA2G4E   650000 perm   300 sec   (2164 perm/sec)   p_kst 4.615385e-06   p_cons 9.718492e-01   p_joint 1.369231e-04

Joint ci ratio: 4.131758e-01	ci left: 1.082958e-04	ci right 1.659401e-04	k: 89	n:660000
Cons ci ratio: 8.214559e-04	ci left: 9.714329e-01	ci right 9.722327e-01	k: 641411	n:660000
KS ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
PLA2G4E   660000 perm   308 sec   (2146 perm/sec)   p_kst 4.545455e-06   p_cons 9.718348e-01   p_joint 1.348485e-04

Joint ci ratio: 4.086599e-01	ci left: 1.093559e-04	ci right 1.667554e-04	k: 91	n:670000
Cons ci ratio: 8.148877e-04	ci left: 9.714639e-01	ci right 9.722574e-01	k: 651148	n:670000
KS ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
PLA2G4E   670000 perm   315 sec   (2128 perm/sec)   p_kst 4.477612e-06   p_cons 9.718627e-01   p_joint 1.358209e-04

Joint ci ratio: 4.086603e-01	ci left: 1.077477e-04	ci right 1.643031e-04	k: 91	n:680000
Cons ci ratio: 8.088217e-04	ci left: 9.714704e-01	ci right 9.722579e-01	k: 660869	n:680000
KS ci ratio: 1.959993e+00	ci left: 9.098129e-07	ci right 1.289299e-05	k: 3	n:680000
PLA2G4E   680000 perm   322 sec   (2110 perm/sec)   p_kst 4.411765e-06   p_cons 9.718662e-01   p_joint 1.338235e-04

Joint ci ratio: 4.042893e-01	ci left: 1.087883e-04	ci right 1.651153e-04	k: 93	n:690000
Cons ci ratio: 8.033999e-04	ci left: 9.714417e-01	ci right 9.722239e-01	k: 670566	n:690000
KS ci ratio: 1.959993e+00	ci left: 8.966272e-07	ci right 1.270614e-05	k: 3	n:690000
PLA2G4E   690000 perm   330 sec   (2093 perm/sec)   p_kst 4.347826e-06   p_cons 9.718348e-01   p_joint 1.347826e-04

Joint ci ratio: 3.979878e-01	ci left: 1.110875e-04	ci right 1.674724e-04	k: 96	n:700000
Cons ci ratio: 7.974187e-04	ci left: 9.714599e-01	ci right 9.722362e-01	k: 680295	n:700000
KS ci ratio: 1.959993e+00	ci left: 8.838182e-07	ci right 1.252462e-05	k: 3	n:700000
PLA2G4E   700000 perm   337 sec   (2076 perm/sec)   p_kst 4.285714e-06   p_cons 9.718500e-01   p_joint 1.371429e-04

Joint ci ratio: 3.900266e-01	ci left: 1.145986e-04	ci right 1.713027e-04	k: 100	n:710000
Cons ci ratio: 7.915281e-04	ci left: 9.714804e-01	ci right 9.722510e-01	k: 690026	n:710000
KS ci ratio: 1.959993e+00	ci left: 8.713700e-07	ci right 1.234822e-05	k: 3	n:710000
PLA2G4E   710000 perm   345 sec   (2059 perm/sec)   p_kst 4.225352e-06   p_cons 9.718676e-01   p_joint 1.408451e-04

Joint ci ratio: 3.900269e-01	ci left: 1.130069e-04	ci right 1.689236e-04	k: 100	n:720000
Cons ci ratio: 7.861252e-04	ci left: 9.714751e-01	ci right 9.722405e-01	k: 699739	n:720000
KS ci ratio: 1.959993e+00	ci left: 8.592677e-07	ci right 1.217672e-05	k: 3	n:720000
PLA2G4E   720000 perm   352 sec   (2043 perm/sec)   p_kst 4.166667e-06   p_cons 9.718597e-01   p_joint 1.388889e-04

Joint ci ratio: 3.843600e-01	ci left: 1.151685e-04	ci right 1.711172e-04	k: 103	n:730000
Cons ci ratio: 7.810660e-04	ci left: 9.714535e-01	ci right 9.722139e-01	k: 709440	n:730000
KS ci ratio: 1.959993e+00	ci left: 8.474969e-07	ci right 1.200992e-05	k: 3	n:730000
PLA2G4E   730000 perm   360 sec   (2027 perm/sec)   p_kst 4.109589e-06   p_cons 9.718356e-01   p_joint 1.410959e-04

Joint ci ratio: 3.789330e-01	ci left: 1.172773e-04	ci right 1.732460e-04	k: 106	n:740000
Cons ci ratio: 7.752983e-04	ci left: 9.714897e-01	ci right 9.722445e-01	k: 719183	n:740000
KS ci ratio: 1.959993e+00	ci left: 8.360442e-07	ci right 1.184762e-05	k: 3	n:740000
PLA2G4E   740000 perm   368 sec   (2010 perm/sec)   p_kst 4.054054e-06   p_cons 9.718689e-01   p_joint 1.432432e-04

Joint ci ratio: 3.919736e-01	ci left: 1.072843e-04	ci right 1.607030e-04	k: 99	n:750000
Cons ci ratio: 7.697494e-04	ci left: 9.715181e-01	ci right 9.722676e-01	k: 728921	n:750000
KS ci ratio: 1.959993e+00	ci left: 8.248969e-07	ci right 1.168965e-05	k: 3	n:750000
PLA2G4E   750000 perm   376 sec   (1994 perm/sec)   p_kst 4.000000e-06   p_cons 9.718947e-01   p_joint 1.320000e-04

Joint ci ratio: 3.862226e-01	ci left: 1.094339e-04	ci right 1.629201e-04	k: 102	n:760000
Cons ci ratio: 7.649435e-04	ci left: 9.715008e-01	ci right 9.722456e-01	k: 738625	n:760000
KS ci ratio: 1.959994e+00	ci left: 8.140430e-07	ci right 1.153584e-05	k: 3	n:760000
PLA2G4E   760000 perm   384 sec   (1978 perm/sec)   p_kst 3.947368e-06   p_cons 9.718750e-01   p_joint 1.342105e-04

Joint ci ratio: 3.862230e-01	ci left: 1.080127e-04	ci right 1.608043e-04	k: 102	n:770000
Cons ci ratio: 7.603885e-04	ci left: 9.714723e-01	ci right 9.722125e-01	k: 748320	n:770000
KS ci ratio: 1.959994e+00	ci left: 8.034710e-07	ci right 1.138603e-05	k: 3	n:770000
PLA2G4E   770000 perm   392 sec   (1963 perm/sec)   p_kst 3.896104e-06   p_cons 9.718442e-01   p_joint 1.324675e-04

Joint ci ratio: 3.881122e-01	ci left: 1.054706e-04	ci right 1.573365e-04	k: 101	n:780000
Cons ci ratio: 7.556654e-04	ci left: 9.714625e-01	ci right 9.721981e-01	k: 758029	n:780000
KS ci ratio: 1.959994e+00	ci left: 7.931701e-07	ci right 1.124005e-05	k: 3	n:780000
PLA2G4E   780000 perm   400 sec   (1948 perm/sec)   p_kst 3.846154e-06   p_cons 9.718321e-01   p_joint 1.294872e-04

Joint ci ratio: 3.881125e-01	ci left: 1.041355e-04	ci right 1.553449e-04	k: 101	n:790000
Cons ci ratio: 7.507339e-04	ci left: 9.714746e-01	ci right 9.722055e-01	k: 767755	n:790000
KS ci ratio: 1.959994e+00	ci left: 7.831300e-07	ci right 1.109777e-05	k: 3	n:790000
PLA2G4E   790000 perm   409 sec   (1933 perm/sec)   p_kst 3.797468e-06   p_cons 9.718418e-01   p_joint 1.278481e-04

Joint ci ratio: 3.881128e-01	ci left: 1.028338e-04	ci right 1.534031e-04	k: 101	n:800000
Cons ci ratio: 7.462214e-04	ci left: 9.714626e-01	ci right 9.721890e-01	k: 777462	n:800000
KS ci ratio: 1.959994e+00	ci left: 7.733408e-07	ci right 1.095905e-05	k: 3	n:800000
PLA2G4E   800000 perm   417 sec   (1919 perm/sec)   p_kst 3.750000e-06   p_cons 9.718275e-01   p_joint 1.262500e-04

Joint ci ratio: 3.881132e-01	ci left: 1.015643e-04	ci right 1.515093e-04	k: 101	n:810000
Cons ci ratio: 7.412373e-04	ci left: 9.714918e-01	ci right 9.722134e-01	k: 787202	n:810000
KS ci ratio: 1.959994e+00	ci left: 7.637934e-07	ci right 1.082376e-05	k: 3	n:810000
PLA2G4E   810000 perm   425 sec   (1904 perm/sec)   p_kst 3.703704e-06   p_cons 9.718543e-01   p_joint 1.246914e-04

Joint ci ratio: 3.900303e-01	ci left: 9.922545e-05	ci right 1.483234e-04	k: 100	n:820000
Cons ci ratio: 7.365318e-04	ci left: 9.715069e-01	ci right 9.722239e-01	k: 796931	n:820000
KS ci ratio: 1.959994e+00	ci left: 7.544788e-07	ci right 1.069176e-05	k: 3	n:820000
PLA2G4E   820000 perm   434 sec   (1890 perm/sec)   p_kst 3.658537e-06   p_cons 9.718671e-01   p_joint 1.219512e-04

Joint ci ratio: 3.881138e-01	ci left: 9.911691e-05	ci right 1.478585e-04	k: 101	n:830000
Cons ci ratio: 7.324630e-04	ci left: 9.714804e-01	ci right 9.721934e-01	k: 806626	n:830000
KS ci ratio: 1.959994e+00	ci left: 7.453887e-07	ci right 1.056294e-05	k: 3	n:830000
PLA2G4E   830000 perm   442 sec   (1876 perm/sec)   p_kst 3.614458e-06   p_cons 9.718386e-01   p_joint 1.216867e-04

Joint ci ratio: 3.881140e-01	ci left: 9.793694e-05	ci right 1.460983e-04	k: 101	n:840000
Cons ci ratio: 7.282384e-04	ci left: 9.714713e-01	ci right 9.721802e-01	k: 816335	n:840000
KS ci ratio: 1.959994e+00	ci left: 7.365150e-07	ci right 1.043719e-05	k: 3	n:840000
PLA2G4E   840000 perm   451 sec   (1862 perm/sec)   p_kst 3.571429e-06   p_cons 9.718274e-01   p_joint 1.202381e-04

Joint ci ratio: 3.862254e-01	ci left: 9.784669e-05	ci right 1.456699e-04	k: 102	n:850000
Cons ci ratio: 7.238061e-04	ci left: 9.714837e-01	ci right 9.721883e-01	k: 826062	n:850000
KS ci ratio: 1.959994e+00	ci left: 7.278501e-07	ci right 1.031440e-05	k: 3	n:850000
PLA2G4E   850000 perm   460 sec   (1849 perm/sec)   p_kst 3.529412e-06   p_cons 9.718376e-01   p_joint 1.200000e-04

Joint ci ratio: 3.862257e-01	ci left: 9.670892e-05	ci right 1.439761e-04	k: 102	n:860000
Cons ci ratio: 7.196218e-04	ci left: 9.714830e-01	ci right 9.721835e-01	k: 835778	n:860000
KS ci ratio: 1.959994e+00	ci left: 7.193868e-07	ci right 1.019447e-05	k: 3	n:860000
PLA2G4E   860000 perm   468 sec   (1836 perm/sec)   p_kst 3.488372e-06   p_cons 9.718349e-01   p_joint 1.186047e-04

Joint ci ratio: 3.843644e-01	ci left: 9.663541e-05	ci right 1.435815e-04	k: 103	n:870000
Cons ci ratio: 7.156895e-04	ci left: 9.714685e-01	ci right 9.721651e-01	k: 845482	n:870000
KS ci ratio: 1.959994e+00	ci left: 7.111179e-07	ci right 1.007729e-05	k: 3	n:870000
PLA2G4E   870000 perm   477 sec   (1823 perm/sec)   p_kst 3.448276e-06   p_cons 9.718184e-01   p_joint 1.183908e-04

Joint ci ratio: 3.825298e-01	ci left: 9.656410e-05	ci right 1.431953e-04	k: 104	n:880000
Cons ci ratio: 7.114811e-04	ci left: 9.714806e-01	ci right 9.721731e-01	k: 855209	n:880000
KS ci ratio: 1.959994e+00	ci left: 7.030371e-07	ci right 9.962778e-06	k: 3	n:880000
PLA2G4E   880000 perm   486 sec   (1810 perm/sec)   p_kst 3.409091e-06   p_cons 9.718284e-01   p_joint 1.181818e-04

Joint ci ratio: 3.807212e-01	ci left: 9.649491e-05	ci right 1.428172e-04	k: 105	n:890000
Cons ci ratio: 7.072590e-04	ci left: 9.714992e-01	ci right 9.721876e-01	k: 864942	n:890000
KS ci ratio: 1.959994e+00	ci left: 6.951378e-07	ci right 9.850837e-06	k: 3	n:890000
PLA2G4E   890000 perm   495 sec   (1797 perm/sec)   p_kst 3.370787e-06   p_cons 9.718449e-01   p_joint 1.179775e-04

Joint ci ratio: 3.789380e-01	ci left: 9.642777e-05	ci right 1.424471e-04	k: 106	n:900000
Cons ci ratio: 7.032679e-04	ci left: 9.715051e-01	ci right 9.721896e-01	k: 874664	n:900000
KS ci ratio: 1.959995e+00	ci left: 6.874140e-07	ci right 9.741383e-06	k: 3	n:900000
PLA2G4E   900000 perm   504 sec   (1785 perm/sec)   p_kst 3.333333e-06   p_cons 9.718489e-01   p_joint 1.177778e-04

Joint ci ratio: 4.021623e-01	ci left: 8.347503e-05	ci right 1.264075e-04	k: 94	n:910000
Cons ci ratio: 6.991751e-04	ci left: 9.715241e-01	ci right 9.722047e-01	k: 884398	n:910000
KS ci ratio: 1.959995e+00	ci left: 6.798600e-07	ci right 9.634335e-06	k: 3	n:910000
PLA2G4E   910000 perm   513 sec   (1773 perm/sec)   p_kst 3.296703e-06   p_cons 9.718659e-01   p_joint 1.032967e-04

Joint ci ratio: 3.959585e-01	ci left: 8.550131e-05	ci right 1.286200e-04	k: 97	n:920000
Cons ci ratio: 6.951803e-04	ci left: 9.715406e-01	ci right 9.722173e-01	k: 894130	n:920000
KS ci ratio: 1.959995e+00	ci left: 6.724702e-07	ci right 9.529615e-06	k: 3	n:920000
PLA2G4E   920000 perm   523 sec   (1760 perm/sec)   p_kst 3.260870e-06   p_cons 9.718804e-01   p_joint 1.054348e-04

Joint ci ratio: 3.919787e-01	ci left: 8.651943e-05	ci right 1.295995e-04	k: 99	n:930000
Cons ci ratio: 6.911578e-04	ci left: 9.715643e-01	ci right 9.722371e-01	k: 903869	n:930000
KS ci ratio: 1.959995e+00	ci left: 6.652393e-07	ci right 9.427146e-06	k: 3	n:930000
PLA2G4E   930000 perm   532 sec   (1748 perm/sec)   p_kst 3.225806e-06   p_cons 9.719022e-01   p_joint 1.064516e-04

Joint ci ratio: 3.881166e-01	ci left: 8.751802e-05	ci right 1.305561e-04	k: 101	n:940000
Cons ci ratio: 6.872039e-04	ci left: 9.715875e-01	ci right 9.722564e-01	k: 913608	n:940000
KS ci ratio: 1.959995e+00	ci left: 6.581623e-07	ci right 9.326858e-06	k: 3	n:940000
PLA2G4E   940000 perm   541 sec   (1736 perm/sec)   p_kst 3.191489e-06   p_cons 9.719234e-01   p_joint 1.074468e-04

Joint ci ratio: 3.881168e-01	ci left: 8.659676e-05	ci right 1.291818e-04	k: 101	n:950000
Cons ci ratio: 6.834486e-04	ci left: 9.715996e-01	ci right 9.722649e-01	k: 923337	n:950000
KS ci ratio: 1.959995e+00	ci left: 6.512343e-07	ci right 9.228680e-06	k: 3	n:950000
PLA2G4E   950000 perm   551 sec   (1724 perm/sec)   p_kst 3.157895e-06   p_cons 9.719337e-01   p_joint 1.063158e-04

Joint ci ratio: 4.328729e-01	ci left: 6.700648e-05	ci right 1.048693e-04	k: 81	n:960000
Cons ci ratio: 6.798969e-04	ci left: 9.715999e-01	ci right 9.722618e-01	k: 933055	n:960000
KS ci ratio: 1.959995e+00	ci left: 6.444506e-07	ci right 9.132549e-06	k: 3	n:960000
PLA2G4E   960000 perm   561 sec   (1713 perm/sec)   p_kst 3.125000e-06   p_cons 9.719323e-01   p_joint 8.437500e-05

Joint ci ratio: 4.302573e-01	ci left: 6.723460e-05	ci right 1.049305e-04	k: 82	n:970000
Cons ci ratio: 6.764511e-04	ci left: 9.715962e-01	ci right 9.722546e-01	k: 942769	n:970000
KS ci ratio: 1.959995e+00	ci left: 6.378068e-07	ci right 9.038399e-06	k: 3	n:970000
PLA2G4E   970000 perm   570 sec   (1701 perm/sec)   p_kst 3.092784e-06   p_cons 9.719268e-01   p_joint 8.453608e-05

Joint ci ratio: 4.302575e-01	ci left: 6.654853e-05	ci right 1.038598e-04	k: 82	n:980000
Cons ci ratio: 6.729691e-04	ci left: 9.715996e-01	ci right 9.722547e-01	k: 952490	n:980000
KS ci ratio: 1.959995e+00	ci left: 6.312985e-07	ci right 8.946171e-06	k: 3	n:980000
PLA2G4E   980000 perm   580 sec   (1690 perm/sec)   p_kst 3.061224e-06   p_cons 9.719286e-01   p_joint 8.367347e-05

Joint ci ratio: 4.276887e-01	ci left: 6.677734e-05	ci right 1.039292e-04	k: 83	n:990000
Cons ci ratio: 6.694783e-04	ci left: 9.716081e-01	ci right 9.722598e-01	k: 962216	n:990000
KS ci ratio: 1.959995e+00	ci left: 6.249218e-07	ci right 8.855806e-06	k: 3	n:990000
PLA2G4E   990000 perm   590 sec   (1678 perm/sec)   p_kst 3.030303e-06   p_cons 9.719354e-01   p_joint 8.383838e-05

Joint ci ratio: 4.276889e-01	ci left: 6.610956e-05	ci right 1.028900e-04	k: 83	n:1000000
Cons ci ratio: 6.659802e-04	ci left: 9.716215e-01	ci right 9.722698e-01	k: 971947	n:1000000
KS ci ratio: 1.959995e+00	ci left: 6.186726e-07	ci right 8.767248e-06	k: 3	n:1000000
PLA2G4E   1000000 perm   600 sec   (1667 perm/sec)   p_kst 3.000000e-06   p_cons 9.719470e-01   p_joint 8.300000e-05

Joint ci ratio: 4.251656e-01	ci left: 6.633883e-05	ci right 1.029670e-04	k: 84	n:1010000
Cons ci ratio: 6.629693e-04	ci left: 9.715988e-01	ci right 9.722441e-01	k: 981642	n:1010000
KS ci ratio: 1.959995e+00	ci left: 6.125471e-07	ci right 8.680444e-06	k: 3	n:1010000
PLA2G4E   1010000 perm   610 sec   (1656 perm/sec)   p_kst 2.970297e-06   p_cons 9.719228e-01   p_joint 8.316832e-05

Joint ci ratio: 4.355380e-01	ci left: 6.219168e-05	ci right 9.761370e-05	k: 80	n:1020000
Cons ci ratio: 6.599154e-04	ci left: 9.715834e-01	ci right 9.722257e-01	k: 991344	n:1020000
KS ci ratio: 1.959995e+00	ci left: 6.065417e-07	ci right 8.595341e-06	k: 3	n:1020000
PLA2G4E   1020000 perm   620 sec   (1646 perm/sec)   p_kst 2.941176e-06   p_cons 9.719059e-01   p_joint 7.843137e-05

Joint ci ratio: 4.355382e-01	ci left: 6.158787e-05	ci right 9.666600e-05	k: 80	n:1030000
Cons ci ratio: 6.567981e-04	ci left: 9.715771e-01	ci right 9.722164e-01	k: 1001055	n:1030000
KS ci ratio: 1.959995e+00	ci left: 6.006529e-07	ci right 8.511892e-06	k: 3	n:1030000
PLA2G4E   1030000 perm   630 sec   (1635 perm/sec)   p_kst 2.912621e-06   p_cons 9.718981e-01   p_joint 7.766990e-05

Joint ci ratio: 4.355384e-01	ci left: 6.099567e-05	ci right 9.573653e-05	k: 80	n:1040000
Cons ci ratio: 6.536210e-04	ci left: 9.715796e-01	ci right 9.722158e-01	k: 1010775	n:1040000
KS ci ratio: 1.959995e+00	ci left: 5.948774e-07	ci right 8.430047e-06	k: 3	n:1040000
PLA2G4E   1040000 perm   640 sec   (1624 perm/sec)   p_kst 2.884615e-06   p_cons 9.718990e-01   p_joint 7.692308e-05

Joint ci ratio: 4.467089e-01	ci left: 5.702837e-05	ci right 9.059473e-05	k: 76	n:1050000
Cons ci ratio: 6.505122e-04	ci left: 9.715802e-01	ci right 9.722134e-01	k: 1020493	n:1050000
KS ci ratio: 1.959995e+00	ci left: 5.892119e-07	ci right 8.349761e-06	k: 3	n:1050000
PLA2G4E   1050000 perm   651 sec   (1614 perm/sec)   p_kst 2.857143e-06   p_cons 9.718981e-01   p_joint 7.238095e-05

Joint ci ratio: 4.467090e-01	ci left: 5.649036e-05	ci right 8.974007e-05	k: 76	n:1060000
Cons ci ratio: 6.473244e-04	ci left: 9.715912e-01	ci right 9.722213e-01	k: 1030222	n:1060000
KS ci ratio: 1.959995e+00	ci left: 5.836533e-07	ci right 8.270990e-06	k: 3	n:1060000
PLA2G4E   1060000 perm   661 sec   (1604 perm/sec)   p_kst 2.830189e-06   p_cons 9.719075e-01   p_joint 7.169811e-05

Joint ci ratio: 4.467092e-01	ci left: 5.596241e-05	ci right 8.890139e-05	k: 76	n:1070000
Cons ci ratio: 6.443924e-04	ci left: 9.715842e-01	ci right 9.722114e-01	k: 1039932	n:1070000
KS ci ratio: 1.959995e+00	ci left: 5.781986e-07	ci right 8.193691e-06	k: 3	n:1070000
PLA2G4E   1070000 perm   671 sec   (1594 perm/sec)   p_kst 2.803738e-06   p_cons 9.718991e-01   p_joint 7.102804e-05

Joint ci ratio: 4.467093e-01	ci left: 5.544424e-05	ci right 8.807823e-05	k: 76	n:1080000
Cons ci ratio: 6.415867e-04	ci left: 9.715698e-01	ci right 9.721943e-01	k: 1049634	n:1080000
KS ci ratio: 1.959995e+00	ci left: 5.728449e-07	ci right 8.117824e-06	k: 3	n:1080000
PLA2G4E   1080000 perm   682 sec   (1584 perm/sec)   p_kst 2.777778e-06   p_cons 9.718833e-01   p_joint 7.037037e-05

Joint ci ratio: 4.467095e-01	ci left: 5.493557e-05	ci right 8.727018e-05	k: 76	n:1090000
Cons ci ratio: 6.382275e-04	ci left: 9.716065e-01	ci right 9.722277e-01	k: 1059391	n:1090000
KS ci ratio: 1.959996e+00	ci left: 5.675895e-07	ci right 8.043349e-06	k: 3	n:1090000
PLA2G4E   1090000 perm   692 sec   (1574 perm/sec)   p_kst 2.752294e-06   p_cons 9.719183e-01   p_joint 6.972477e-05

Joint ci ratio: 4.467096e-01	ci left: 5.443615e-05	ci right 8.647682e-05	k: 76	n:1100000
Cons ci ratio: 6.356497e-04	ci left: 9.715794e-01	ci right 9.721981e-01	k: 1069079	n:1100000
KS ci ratio: 1.959996e+00	ci left: 5.624296e-07	ci right 7.970227e-06	k: 3	n:1100000
PLA2G4E   1100000 perm   703 sec   (1564 perm/sec)   p_kst 2.727273e-06   p_cons 9.718900e-01   p_joint 6.909091e-05

Joint ci ratio: 4.467098e-01	ci left: 5.394573e-05	ci right 8.569776e-05	k: 76	n:1110000
Cons ci ratio: 6.327788e-04	ci left: 9.715809e-01	ci right 9.721968e-01	k: 1078798	n:1110000
KS ci ratio: 1.959996e+00	ci left: 5.573626e-07	ci right 7.898424e-06	k: 3	n:1110000
PLA2G4E   1110000 perm   714 sec   (1555 perm/sec)   p_kst 2.702703e-06   p_cons 9.718901e-01   p_joint 6.846847e-05

Joint ci ratio: 4.438369e-01	ci left: 5.425679e-05	ci right 8.592497e-05	k: 77	n:1120000
Cons ci ratio: 6.299464e-04	ci left: 9.715824e-01	ci right 9.721955e-01	k: 1088517	n:1120000
KS ci ratio: 1.959996e+00	ci left: 5.523862e-07	ci right 7.827902e-06	k: 3	n:1120000
PLA2G4E   1120000 perm   725 sec   (1545 perm/sec)   p_kst 2.678571e-06   p_cons 9.718902e-01   p_joint 6.875000e-05

Joint ci ratio: 4.438371e-01	ci left: 5.377664e-05	ci right 8.516457e-05	k: 77	n:1130000
Cons ci ratio: 6.270908e-04	ci left: 9.715892e-01	ci right 9.721995e-01	k: 1098242	n:1130000
KS ci ratio: 1.959996e+00	ci left: 5.474978e-07	ci right 7.758629e-06	k: 3	n:1130000
PLA2G4E   1130000 perm   736 sec   (1536 perm/sec)   p_kst 2.654867e-06   p_cons 9.718956e-01   p_joint 6.814159e-05

Joint ci ratio: 5.103271e-01	ci left: 3.863341e-05	ci right 6.577008e-05	k: 58	n:1140000
Cons ci ratio: 6.247047e-04	ci left: 9.715580e-01	ci right 9.721660e-01	k: 1107924	n:1140000
KS ci ratio: 1.959996e+00	ci left: 5.426952e-07	ci right 7.690571e-06	k: 3	n:1140000
PLA2G4E   1140000 perm   747 sec   (1526 perm/sec)   p_kst 2.631579e-06   p_cons 9.718632e-01   p_joint 5.087719e-05

Joint ci ratio: 5.060564e-01	ci left: 3.905547e-05	ci right 6.617838e-05	k: 59	n:1150000
Cons ci ratio: 6.219888e-04	ci left: 9.715587e-01	ci right 9.721641e-01	k: 1117642	n:1150000
KS ci ratio: 1.959996e+00	ci left: 5.379761e-07	ci right 7.623697e-06	k: 3	n:1150000
PLA2G4E   1150000 perm   758 sec   (1517 perm/sec)   p_kst 2.608696e-06   p_cons 9.718626e-01   p_joint 5.130435e-05

Joint ci ratio: 5.060565e-01	ci left: 3.871878e-05	ci right 6.560788e-05	k: 59	n:1160000
Cons ci ratio: 6.194935e-04	ci left: 9.715431e-01	ci right 9.721460e-01	k: 1127341	n:1160000
KS ci ratio: 1.959996e+00	ci left: 5.333384e-07	ci right 7.557975e-06	k: 3	n:1160000
PLA2G4E   1160000 perm   769 sec   (1508 perm/sec)   p_kst 2.586207e-06   p_cons 9.718457e-01   p_joint 5.086207e-05

Joint ci ratio: 5.018913e-01	ci left: 3.913383e-05	ci right 6.600968e-05	k: 60	n:1170000
Cons ci ratio: 6.169700e-04	ci left: 9.715328e-01	ci right 9.721332e-01	k: 1137046	n:1170000
KS ci ratio: 1.959996e+00	ci left: 5.287799e-07	ci right 7.493377e-06	k: 3	n:1170000
PLA2G4E   1170000 perm   780 sec   (1500 perm/sec)   p_kst 2.564103e-06   p_cons 9.718342e-01   p_joint 5.128205e-05

Joint ci ratio: 5.018914e-01	ci left: 3.880218e-05	ci right 6.545028e-05	k: 60	n:1180000
Cons ci ratio: 6.145150e-04	ci left: 9.715193e-01	ci right 9.721173e-01	k: 1146747	n:1180000
KS ci ratio: 1.959996e+00	ci left: 5.242987e-07	ci right 7.429874e-06	k: 3	n:1180000
PLA2G4E   1180000 perm   791 sec   (1491 perm/sec)   p_kst 2.542373e-06   p_cons 9.718195e-01   p_joint 5.084746e-05

Joint ci ratio: 4.978273e-01	ci left: 3.921044e-05	ci right 6.584578e-05	k: 61	n:1190000
Cons ci ratio: 6.119481e-04	ci left: 9.715187e-01	ci right 9.721143e-01	k: 1156463	n:1190000
KS ci ratio: 1.959996e+00	ci left: 5.198928e-07	ci right 7.367439e-06	k: 3	n:1190000
PLA2G4E   1190000 perm   803 sec   (1482 perm/sec)   p_kst 2.521008e-06   p_cons 9.718176e-01   p_joint 5.126050e-05

Joint ci ratio: 4.438380e-01	ci left: 5.063965e-05	ci right 8.019668e-05	k: 77	n:1200000
Cons ci ratio: 6.096726e-04	ci left: 9.714947e-01	ci right 9.720880e-01	k: 1166151	n:1200000
KS ci ratio: 1.753073e+00	ci left: 9.082219e-07	ci right 8.534635e-06	k: 4	n:1200000
PLA2G4E   1200000 perm   814 sec   (1473 perm/sec)   p_kst 3.333333e-06   p_cons 9.717925e-01   p_joint 6.416667e-05

Joint ci ratio: 4.382547e-01	ci left: 5.169045e-05	ci right 8.136924e-05	k: 79	n:1210000
Cons ci ratio: 6.070191e-04	ci left: 9.715076e-01	ci right 9.720984e-01	k: 1175883	n:1210000
KS ci ratio: 1.753073e+00	ci left: 9.007159e-07	ci right 8.464101e-06	k: 4	n:1210000
PLA2G4E   1210000 perm   826 sec   (1465 perm/sec)   p_kst 3.305785e-06   p_cons 9.718041e-01   p_joint 6.528926e-05

Joint ci ratio: 4.328769e-01	ci left: 5.272632e-05	ci right 8.252032e-05	k: 81	n:1220000
Cons ci ratio: 6.045356e-04	ci left: 9.715080e-01	ci right 9.720963e-01	k: 1185600	n:1220000
KS ci ratio: 1.753073e+00	ci left: 8.933330e-07	ci right 8.394723e-06	k: 4	n:1220000
PLA2G4E   1220000 perm   838 sec   (1457 perm/sec)   p_kst 3.278689e-06   p_cons 9.718033e-01   p_joint 6.639344e-05

Joint ci ratio: 4.328770e-01	ci left: 5.229764e-05	ci right 8.184943e-05	k: 81	n:1230000
Cons ci ratio: 6.023412e-04	ci left: 9.714847e-01	ci right 9.720708e-01	k: 1195288	n:1230000
KS ci ratio: 1.753073e+00	ci left: 8.860701e-07	ci right 8.326474e-06	k: 4	n:1230000
PLA2G4E   1230000 perm   849 sec   (1448 perm/sec)   p_kst 3.252033e-06   p_cons 9.717789e-01   p_joint 6.585366e-05

Joint ci ratio: 4.302613e-01	ci left: 5.259472e-05	ci right 8.208291e-05	k: 82	n:1240000
Cons ci ratio: 5.999938e-04	ci left: 9.714779e-01	ci right 9.720618e-01	k: 1204996	n:1240000
KS ci ratio: 1.753073e+00	ci left: 8.789244e-07	ci right 8.259325e-06	k: 4	n:1240000
PLA2G4E   1240000 perm   861 sec   (1440 perm/sec)   p_kst 3.225806e-06   p_cons 9.717710e-01   p_joint 6.612903e-05

Joint ci ratio: 4.302614e-01	ci left: 5.217396e-05	ci right 8.142625e-05	k: 82	n:1250000
Cons ci ratio: 5.975080e-04	ci left: 9.714866e-01	ci right 9.720680e-01	k: 1214723	n:1250000
KS ci ratio: 1.753073e+00	ci left: 8.718930e-07	ci right 8.193250e-06	k: 4	n:1250000
PLA2G4E   1250000 perm   873 sec   (1432 perm/sec)   p_kst 3.200000e-06   p_cons 9.717784e-01   p_joint 6.560000e-05

Joint ci ratio: 4.302616e-01	ci left: 5.175987e-05	ci right 8.078002e-05	k: 82	n:1260000
Cons ci ratio: 5.950097e-04	ci left: 9.714991e-01	ci right 9.720781e-01	k: 1224455	n:1260000
KS ci ratio: 1.753073e+00	ci left: 8.649732e-07	ci right 8.128225e-06	k: 4	n:1260000
PLA2G4E   1260000 perm   885 sec   (1424 perm/sec)   p_kst 3.174603e-06   p_cons 9.717897e-01   p_joint 6.507937e-05

Joint ci ratio: 4.276928e-01	ci left: 5.205469e-05	ci right 8.101589e-05	k: 83	n:1270000
Cons ci ratio: 5.927382e-04	ci left: 9.714932e-01	ci right 9.720700e-01	k: 1234164	n:1270000
KS ci ratio: 1.753073e+00	ci left: 8.581624e-07	ci right 8.064223e-06	k: 4	n:1270000
PLA2G4E   1270000 perm   897 sec   (1416 perm/sec)   p_kst 3.149606e-06   p_cons 9.717827e-01   p_joint 6.535433e-05

Joint ci ratio: 4.131896e-01	ci left: 5.583966e-05	ci right 8.556350e-05	k: 89	n:1280000
Cons ci ratio: 5.901476e-04	ci left: 9.715196e-01	ci right 9.720939e-01	k: 1243914	n:1280000
KS ci ratio: 1.600329e+00	ci left: 1.268350e-06	ci right 9.115861e-06	k: 5	n:1280000
PLA2G4E   1280000 perm   909 sec   (1408 perm/sec)   p_kst 3.906250e-06   p_cons 9.718078e-01   p_joint 6.953125e-05

Joint ci ratio: 4.202538e-01	ci left: 5.332506e-05	ci right 8.233215e-05	k: 86	n:1290000
Cons ci ratio: 5.878979e-04	ci left: 9.715168e-01	ci right 9.720889e-01	k: 1253627	n:1290000
KS ci ratio: 1.600329e+00	ci left: 1.258518e-06	ci right 9.045195e-06	k: 5	n:1290000
PLA2G4E   1290000 perm   921 sec   (1401 perm/sec)   p_kst 3.875969e-06   p_cons 9.718039e-01   p_joint 6.666667e-05

Joint ci ratio: 4.155048e-01	ci left: 5.429155e-05	ci right 8.339816e-05	k: 88	n:1300000
Cons ci ratio: 5.852955e-04	ci left: 9.715495e-01	ci right 9.721191e-01	k: 1263386	n:1300000
KS ci ratio: 1.600329e+00	ci left: 1.248837e-06	ci right 8.975617e-06	k: 5	n:1300000
PLA2G4E   1300000 perm   933 sec   (1393 perm/sec)   p_kst 3.846154e-06   p_cons 9.718354e-01   p_joint 6.769231e-05

Joint ci ratio: 4.155049e-01	ci left: 5.387711e-05	ci right 8.276154e-05	k: 88	n:1310000
Cons ci ratio: 5.829300e-04	ci left: 9.715627e-01	ci right 9.721299e-01	k: 1273120	n:1310000
KS ci ratio: 1.600329e+00	ci left: 1.239304e-06	ci right 8.907101e-06	k: 5	n:1310000
PLA2G4E   1310000 perm   945 sec   (1386 perm/sec)   p_kst 3.816794e-06   p_cons 9.718473e-01   p_joint 6.717557e-05

Joint ci ratio: 4.155050e-01	ci left: 5.346895e-05	ci right 8.213456e-05	k: 88	n:1320000
Cons ci ratio: 5.808582e-04	ci left: 9.715504e-01	ci right 9.721157e-01	k: 1282821	n:1320000
KS ci ratio: 1.600329e+00	ci left: 1.229915e-06	ci right 8.839623e-06	k: 5	n:1320000
PLA2G4E   1320000 perm   957 sec   (1379 perm/sec)   p_kst 3.787879e-06   p_cons 9.718341e-01   p_joint 6.666667e-05

Joint ci ratio: 4.155051e-01	ci left: 5.306692e-05	ci right 8.151701e-05	k: 88	n:1330000
Cons ci ratio: 5.786174e-04	ci left: 9.715565e-01	ci right 9.721196e-01	k: 1292546	n:1330000
KS ci ratio: 1.600329e+00	ci left: 1.220668e-06	ci right 8.773160e-06	k: 5	n:1330000
PLA2G4E   1330000 perm   970 sec   (1372 perm/sec)   p_kst 3.759398e-06   p_cons 9.718391e-01   p_joint 6.616541e-05

Joint ci ratio: 4.251701e-01	ci left: 5.000156e-05	ci right 7.760966e-05	k: 84	n:1340000
Cons ci ratio: 5.764809e-04	ci left: 9.715551e-01	ci right 9.721160e-01	k: 1302261	n:1340000
KS ci ratio: 1.600329e+00	ci left: 1.211558e-06	ci right 8.707689e-06	k: 5	n:1340000
PLA2G4E   1340000 perm   982 sec   (1365 perm/sec)   p_kst 3.731343e-06   p_cons 9.718366e-01   p_joint 6.268657e-05

Joint ci ratio: 4.251702e-01	ci left: 4.963118e-05	ci right 7.703477e-05	k: 84	n:1350000
Cons ci ratio: 5.743058e-04	ci left: 9.715596e-01	ci right 9.721184e-01	k: 1311984	n:1350000
KS ci ratio: 1.600329e+00	ci left: 1.202584e-06	ci right 8.643188e-06	k: 5	n:1350000
PLA2G4E   1350000 perm   994 sec   (1358 perm/sec)   p_kst 3.703704e-06   p_cons 9.718400e-01   p_joint 6.222222e-05

Joint ci ratio: 4.226910e-01	ci left: 4.992308e-05	ci right 7.728165e-05	k: 85	n:1360000
Cons ci ratio: 5.723549e-04	ci left: 9.715448e-01	ci right 9.721017e-01	k: 1321681	n:1360000
KS ci ratio: 1.600329e+00	ci left: 1.193741e-06	ci right 8.579635e-06	k: 5	n:1360000
PLA2G4E   1360000 perm   1007 sec   (1350 perm/sec)   p_kst 3.676471e-06   p_cons 9.718243e-01   p_joint 6.250000e-05

Joint ci ratio: 4.178598e-01	ci left: 5.086412e-05	ci right 7.833094e-05	k: 87	n:1370000
Cons ci ratio: 5.701728e-04	ci left: 9.715544e-01	ci right 9.721093e-01	k: 1331411	n:1370000
KS ci ratio: 1.600329e+00	ci left: 1.185028e-06	ci right 8.517010e-06	k: 5	n:1370000
PLA2G4E   1370000 perm   1020 sec   (1344 perm/sec)   p_kst 3.649635e-06   p_cons 9.718328e-01   p_joint 6.350365e-05

Joint ci ratio: 4.178599e-01	ci left: 5.049554e-05	ci right 7.776333e-05	k: 87	n:1380000
Cons ci ratio: 5.681131e-04	ci left: 9.715545e-01	ci right 9.721073e-01	k: 1341128	n:1380000
KS ci ratio: 1.600329e+00	ci left: 1.176440e-06	ci right 8.455293e-06	k: 5	n:1380000
PLA2G4E   1380000 perm   1032 sec   (1337 perm/sec)   p_kst 3.623188e-06   p_cons 9.718319e-01   p_joint 6.304348e-05

Joint ci ratio: 4.178600e-01	ci left: 5.013226e-05	ci right 7.720388e-05	k: 87	n:1390000
Cons ci ratio: 5.662987e-04	ci left: 9.715328e-01	ci right 9.720839e-01	k: 1350815	n:1390000
KS ci ratio: 1.600329e+00	ci left: 1.167977e-06	ci right 8.394463e-06	k: 5	n:1390000
PLA2G4E   1390000 perm   1045 sec   (1330 perm/sec)   p_kst 3.597122e-06   p_cons 9.718094e-01   p_joint 6.258993e-05

Joint ci ratio: 4.178601e-01	ci left: 4.977417e-05	ci right 7.665243e-05	k: 87	n:1400000
Cons ci ratio: 5.644939e-04	ci left: 9.715122e-01	ci right 9.720615e-01	k: 1360503	n:1400000
KS ci ratio: 1.600329e+00	ci left: 1.159634e-06	ci right 8.334503e-06	k: 5	n:1400000
PLA2G4E   1400000 perm   1058 sec   (1323 perm/sec)   p_kst 3.571429e-06   p_cons 9.717879e-01   p_joint 6.214286e-05

Joint ci ratio: 4.328788e-01	ci left: 4.562131e-05	ci right 7.140064e-05	k: 81	n:1410000
Cons ci ratio: 5.625167e-04	ci left: 9.715105e-01	ci right 9.720578e-01	k: 1370217	n:1410000
KS ci ratio: 1.600329e+00	ci left: 1.151410e-06	ci right 8.275393e-06	k: 5	n:1410000
PLA2G4E   1410000 perm   1071 sec   (1316 perm/sec)   p_kst 3.546099e-06   p_cons 9.717851e-01   p_joint 5.744681e-05

Joint ci ratio: 4.328789e-01	ci left: 4.530003e-05	ci right 7.089782e-05	k: 81	n:1420000
Cons ci ratio: 5.605818e-04	ci left: 9.715066e-01	ci right 9.720520e-01	k: 1379928	n:1420000
KS ci ratio: 1.600329e+00	ci left: 1.143301e-06	ci right 8.217116e-06	k: 5	n:1420000
PLA2G4E   1420000 perm   1084 sec   (1310 perm/sec)   p_kst 3.521127e-06   p_cons 9.717803e-01   p_joint 5.704225e-05

Joint ci ratio: 4.328790e-01	ci left: 4.498325e-05	ci right 7.040204e-05	k: 81	n:1430000
Cons ci ratio: 5.587237e-04	ci left: 9.714972e-01	ci right 9.720408e-01	k: 1389631	n:1430000
KS ci ratio: 1.600329e+00	ci left: 1.135306e-06	ci right 8.159654e-06	k: 5	n:1430000
PLA2G4E   1430000 perm   1098 sec   (1303 perm/sec)   p_kst 3.496503e-06   p_cons 9.717699e-01   p_joint 5.664336e-05

Joint ci ratio: 4.302633e-01	ci left: 4.528985e-05	ci right 7.068258e-05	k: 82	n:1440000
Cons ci ratio: 5.568768e-04	ci left: 9.714886e-01	ci right 9.720304e-01	k: 1399335	n:1440000
KS ci ratio: 1.600329e+00	ci left: 1.127422e-06	ci right 8.102990e-06	k: 5	n:1440000
PLA2G4E   1440000 perm   1111 sec   (1296 perm/sec)   p_kst 3.472222e-06   p_cons 9.717604e-01   p_joint 5.694444e-05

Joint ci ratio: 4.276945e-01	ci left: 4.559269e-05	ci right 7.095882e-05	k: 83	n:1450000
Cons ci ratio: 5.549016e-04	ci left: 9.714946e-01	ci right 9.720345e-01	k: 1409060	n:1450000
KS ci ratio: 1.481617e+00	ci left: 1.518549e-06	ci right 9.006512e-06	k: 6	n:1450000
PLA2G4E   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 4.137931e-06   p_cons 9.717655e-01   p_joint 5.724138e-05

Joint ci ratio: 4.276946e-01	ci left: 4.528041e-05	ci right 7.047280e-05	k: 83	n:1460000
Cons ci ratio: 5.530162e-04	ci left: 9.714937e-01	ci right 9.720318e-01	k: 1418775	n:1460000
KS ci ratio: 1.481617e+00	ci left: 1.508148e-06	ci right 8.944824e-06	k: 6	n:1460000
PLA2G4E   1460000 perm   1138 sec   (1283 perm/sec)   p_kst 4.109589e-06   p_cons 9.717637e-01   p_joint 5.684932e-05

Joint ci ratio: 4.276947e-01	ci left: 4.497238e-05	ci right 6.999340e-05	k: 83	n:1470000
Cons ci ratio: 5.511227e-04	ci left: 9.714956e-01	ci right 9.720318e-01	k: 1428494	n:1470000
KS ci ratio: 1.481617e+00	ci left: 1.497889e-06	ci right 8.883975e-06	k: 6	n:1470000
PLA2G4E   1470000 perm   1151 sec   (1277 perm/sec)   p_kst 4.081633e-06   p_cons 9.717646e-01   p_joint 5.646259e-05

Joint ci ratio: 4.251713e-01	ci left: 4.527166e-05	ci right 7.026825e-05	k: 84	n:1480000
Cons ci ratio: 5.491267e-04	ci left: 9.715096e-01	ci right 9.720439e-01	k: 1438231	n:1480000
KS ci ratio: 1.481617e+00	ci left: 1.487768e-06	ci right 8.823948e-06	k: 6	n:1480000
PLA2G4E   1480000 perm   1165 sec   (1270 perm/sec)   p_kst 4.054054e-06   p_cons 9.717777e-01   p_joint 5.675676e-05

Joint ci ratio: 4.276949e-01	ci left: 4.436872e-05	ci right 6.905389e-05	k: 83	n:1490000
Cons ci ratio: 5.472592e-04	ci left: 9.715127e-01	ci right 9.720452e-01	k: 1447952	n:1490000
KS ci ratio: 1.481617e+00	ci left: 1.477783e-06	ci right 8.764727e-06	k: 6	n:1490000
PLA2G4E   1490000 perm   1179 sec   (1264 perm/sec)   p_kst 4.026846e-06   p_cons 9.717799e-01   p_joint 5.570470e-05

Joint ci ratio: 4.276949e-01	ci left: 4.407292e-05	ci right 6.859354e-05	k: 83	n:1500000
Cons ci ratio: 5.454770e-04	ci left: 9.715091e-01	ci right 9.720398e-01	k: 1457663	n:1500000
KS ci ratio: 1.481617e+00	ci left: 1.467931e-06	ci right 8.706296e-06	k: 6	n:1500000
PLA2G4E   1500000 perm   1192 sec   (1258 perm/sec)   p_kst 4.000000e-06   p_cons 9.717753e-01   p_joint 5.533333e-05

Joint ci ratio: 4.226923e-01	ci left: 4.496380e-05	ci right 6.960471e-05	k: 85	n:1510000
Cons ci ratio: 5.435480e-04	ci left: 9.715221e-01	ci right 9.720509e-01	k: 1467399	n:1510000
KS ci ratio: 1.385925e+00	ci left: 1.863819e-06	ci right 9.551417e-06	k: 7	n:1510000
PLA2G4E   1510000 perm   1206 sec   (1252 perm/sec)   p_kst 4.635762e-06   p_cons 9.717874e-01   p_joint 5.629139e-05

Joint ci ratio: 4.226924e-01	ci left: 4.466799e-05	ci right 6.914679e-05	k: 85	n:1520000
Cons ci ratio: 5.417432e-04	ci left: 9.715244e-01	ci right 9.720515e-01	k: 1477119	n:1520000
KS ci ratio: 1.385925e+00	ci left: 1.851557e-06	ci right 9.488579e-06	k: 7	n:1520000
PLA2G4E   1520000 perm   1220 sec   (1246 perm/sec)   p_kst 4.605263e-06   p_cons 9.717888e-01   p_joint 5.592105e-05

Joint ci ratio: 4.226925e-01	ci left: 4.437604e-05	ci right 6.869485e-05	k: 85	n:1530000
Cons ci ratio: 5.400528e-04	ci left: 9.715168e-01	ci right 9.720422e-01	k: 1486824	n:1530000
KS ci ratio: 1.385925e+00	ci left: 1.839455e-06	ci right 9.426562e-06	k: 7	n:1530000
PLA2G4E   1530000 perm   1234 sec   (1240 perm/sec)   p_kst 4.575163e-06   p_cons 9.717804e-01   p_joint 5.555556e-05

Joint ci ratio: 4.226925e-01	ci left: 4.408788e-05	ci right 6.824879e-05	k: 85	n:1540000
Cons ci ratio: 5.385119e-04	ci left: 9.714956e-01	ci right 9.720195e-01	k: 1496508	n:1540000
KS ci ratio: 1.385925e+00	ci left: 1.827510e-06	ci right 9.365351e-06	k: 7	n:1540000
PLA2G4E   1540000 perm   1248 sec   (1234 perm/sec)   p_kst 4.545455e-06   p_cons 9.717584e-01   p_joint 5.519481e-05

Joint ci ratio: 4.202562e-01	ci left: 4.438017e-05	ci right 6.852168e-05	k: 86	n:1550000
Cons ci ratio: 5.366431e-04	ci left: 9.715097e-01	ci right 9.720318e-01	k: 1506246	n:1550000
KS ci ratio: 1.385925e+00	ci left: 1.815720e-06	ci right 9.304930e-06	k: 7	n:1550000
PLA2G4E   1550000 perm   1262 sec   (1228 perm/sec)   p_kst 4.516129e-06   p_cons 9.717716e-01   p_joint 5.548387e-05

Joint ci ratio: 4.202563e-01	ci left: 4.409568e-05	ci right 6.808244e-05	k: 86	n:1560000
Cons ci ratio: 5.348810e-04	ci left: 9.715146e-01	ci right 9.720350e-01	k: 1515970	n:1560000
KS ci ratio: 1.385925e+00	ci left: 1.804081e-06	ci right 9.245283e-06	k: 7	n:1560000
PLA2G4E   1560000 perm   1276 sec   (1222 perm/sec)   p_kst 4.487179e-06   p_cons 9.717756e-01   p_joint 5.512821e-05

Joint ci ratio: 4.202563e-01	ci left: 4.381481e-05	ci right 6.764880e-05	k: 86	n:1570000
Cons ci ratio: 5.332104e-04	ci left: 9.715117e-01	ci right 9.720305e-01	k: 1525682	n:1570000
KS ci ratio: 1.385925e+00	ci left: 1.792590e-06	ci right 9.186396e-06	k: 7	n:1570000
PLA2G4E   1570000 perm   1291 sec   (1216 perm/sec)   p_kst 4.458599e-06   p_cons 9.717720e-01   p_joint 5.477707e-05

Joint ci ratio: 4.178616e-01	ci left: 4.410367e-05	ci right 6.791993e-05	k: 87	n:1580000
Cons ci ratio: 5.315309e-04	ci left: 9.715114e-01	ci right 9.720286e-01	k: 1535398	n:1580000
KS ci ratio: 1.306663e+00	ci left: 2.185972e-06	ci right 9.976678e-06	k: 8	n:1580000
PLA2G4E   1580000 perm   1305 sec   (1211 perm/sec)   p_kst 5.063291e-06   p_cons 9.717709e-01   p_joint 5.506329e-05

Joint ci ratio: 4.178617e-01	ci left: 4.382628e-05	ci right 6.749276e-05	k: 87	n:1590000
Cons ci ratio: 5.298064e-04	ci left: 9.715175e-01	ci right 9.720330e-01	k: 1545124	n:1590000
KS ci ratio: 1.306663e+00	ci left: 2.172224e-06	ci right 9.913931e-06	k: 8	n:1590000
PLA2G4E   1590000 perm   1319 sec   (1205 perm/sec)   p_kst 5.031447e-06   p_cons 9.717761e-01   p_joint 5.471698e-05

Joint ci ratio: 4.467146e-01	ci left: 3.742477e-05	ci right 5.945298e-05	k: 76	n:1600000
Cons ci ratio: 5.281407e-04	ci left: 9.715191e-01	ci right 9.720329e-01	k: 1554843	n:1600000
KS ci ratio: 1.239609e+00	ci left: 2.572111e-06	ci right 1.067798e-05	k: 9	n:1600000
PLA2G4E   1600000 perm   1334 sec   (1199 perm/sec)   p_kst 5.625000e-06   p_cons 9.717769e-01   p_joint 4.750000e-05

Joint ci ratio: 4.467146e-01	ci left: 3.719232e-05	ci right 5.908371e-05	k: 76	n:1610000
Cons ci ratio: 5.266455e-04	ci left: 9.715045e-01	ci right 9.720168e-01	k: 1564536	n:1610000
KS ci ratio: 1.239609e+00	ci left: 2.556135e-06	ci right 1.061165e-05	k: 9	n:1610000
PLA2G4E   1610000 perm   1352 sec   (1191 perm/sec)   p_kst 5.590062e-06   p_cons 9.717615e-01   p_joint 4.720497e-05

Joint ci ratio: 4.467147e-01	ci left: 3.696274e-05	ci right 5.871899e-05	k: 76	n:1620000
Cons ci ratio: 5.249562e-04	ci left: 9.715117e-01	ci right 9.720224e-01	k: 1574264	n:1620000
KS ci ratio: 1.239609e+00	ci left: 2.540357e-06	ci right 1.054615e-05	k: 9	n:1620000
PLA2G4E   1620000 perm   1368 sec   (1184 perm/sec)   p_kst 5.555556e-06   p_cons 9.717679e-01   p_joint 4.691358e-05

Joint ci ratio: 4.467148e-01	ci left: 3.673597e-05	ci right 5.835876e-05	k: 76	n:1630000
Cons ci ratio: 5.232596e-04	ci left: 9.715213e-01	ci right 9.720304e-01	k: 1583996	n:1630000
KS ci ratio: 1.239609e+00	ci left: 2.524772e-06	ci right 1.048145e-05	k: 9	n:1630000
PLA2G4E   1630000 perm   1382 sec   (1179 perm/sec)   p_kst 5.521472e-06   p_cons 9.717767e-01   p_joint 4.662577e-05

Joint ci ratio: 4.438419e-01	ci left: 3.705334e-05	ci right 5.868062e-05	k: 77	n:1640000
Cons ci ratio: 5.217069e-04	ci left: 9.715173e-01	ci right 9.720249e-01	k: 1593706	n:1640000
KS ci ratio: 1.239609e+00	ci left: 2.509377e-06	ci right 1.041754e-05	k: 9	n:1640000
PLA2G4E   1640000 perm   1397 sec   (1174 perm/sec)   p_kst 5.487805e-06   p_cons 9.717720e-01   p_joint 4.695122e-05

Joint ci ratio: 4.438420e-01	ci left: 3.682877e-05	ci right 5.832499e-05	k: 77	n:1650000
Cons ci ratio: 5.202023e-04	ci left: 9.715098e-01	ci right 9.720159e-01	k: 1603410	n:1650000
KS ci ratio: 1.239609e+00	ci left: 2.494168e-06	ci right 1.035440e-05	k: 9	n:1650000
PLA2G4E   1650000 perm   1412 sec   (1168 perm/sec)   p_kst 5.454545e-06   p_cons 9.717636e-01   p_joint 4.666667e-05

Joint ci ratio: 4.410238e-01	ci left: 3.714220e-05	ci right 5.864275e-05	k: 78	n:1660000
Cons ci ratio: 5.185513e-04	ci left: 9.715192e-01	ci right 9.720237e-01	k: 1613142	n:1660000
KS ci ratio: 1.239609e+00	ci left: 2.479143e-06	ci right 1.029203e-05	k: 9	n:1660000
PLA2G4E   1660000 perm   1428 sec   (1163 perm/sec)   p_kst 5.421687e-06   p_cons 9.717723e-01   p_joint 4.698795e-05

Joint ci ratio: 4.382587e-01	ci left: 3.745230e-05	ci right 5.895629e-05	k: 79	n:1670000
Cons ci ratio: 5.169835e-04	ci left: 9.715213e-01	ci right 9.720243e-01	k: 1622862	n:1670000
KS ci ratio: 1.239609e+00	ci left: 2.464298e-06	ci right 1.023040e-05	k: 9	n:1670000
PLA2G4E   1670000 perm   1443 sec   (1157 perm/sec)   p_kst 5.389222e-06   p_cons 9.717737e-01   p_joint 4.730539e-05

Joint ci ratio: 4.328809e-01	ci left: 3.828928e-05	ci right 5.992560e-05	k: 81	n:1680000
Cons ci ratio: 5.154746e-04	ci left: 9.715187e-01	ci right 9.720202e-01	k: 1632574	n:1680000
KS ci ratio: 1.239609e+00	ci left: 2.449630e-06	ci right 1.016950e-05	k: 9	n:1680000
PLA2G4E   1680000 perm   1458 sec   (1152 perm/sec)   p_kst 5.357143e-06   p_cons 9.717702e-01   p_joint 4.821429e-05

Joint ci ratio: 4.328810e-01	ci left: 3.806272e-05	ci right 5.957102e-05	k: 81	n:1690000
Cons ci ratio: 5.139234e-04	ci left: 9.715220e-01	ci right 9.720220e-01	k: 1642296	n:1690000
KS ci ratio: 1.239609e+00	ci left: 2.435135e-06	ci right 1.010933e-05	k: 9	n:1690000
PLA2G4E   1690000 perm   1474 sec   (1147 perm/sec)   p_kst 5.325444e-06   p_cons 9.717728e-01   p_joint 4.792899e-05

Joint ci ratio: 4.328810e-01	ci left: 3.783882e-05	ci right 5.922060e-05	k: 81	n:1700000
Cons ci ratio: 5.125180e-04	ci left: 9.715111e-01	ci right 9.720097e-01	k: 1651994	n:1700000
KS ci ratio: 1.239609e+00	ci left: 2.420810e-06	ci right 1.004986e-05	k: 9	n:1700000
PLA2G4E   1700000 perm   1489 sec   (1142 perm/sec)   p_kst 5.294118e-06   p_cons 9.717612e-01   p_joint 4.764706e-05

Joint ci ratio: 4.328811e-01	ci left: 3.761754e-05	ci right 5.887428e-05	k: 81	n:1710000
Cons ci ratio: 5.110205e-04	ci left: 9.715114e-01	ci right 9.720086e-01	k: 1661711	n:1710000
KS ci ratio: 1.239609e+00	ci left: 2.406654e-06	ci right 9.991090e-06	k: 9	n:1710000
PLA2G4E   1710000 perm   1504 sec   (1137 perm/sec)   p_kst 5.263158e-06   p_cons 9.717608e-01   p_joint 4.736842e-05

Joint ci ratio: 4.276965e-01	ci left: 3.843566e-05	ci right 5.982000e-05	k: 83	n:1720000
Cons ci ratio: 5.094767e-04	ci left: 9.715182e-01	ci right 9.720139e-01	k: 1671439	n:1720000
KS ci ratio: 1.239609e+00	ci left: 2.392661e-06	ci right 9.933002e-06	k: 9	n:1720000
PLA2G4E   1720000 perm   1520 sec   (1132 perm/sec)   p_kst 5.232558e-06   p_cons 9.717669e-01   p_joint 4.825581e-05

Joint ci ratio: 4.276966e-01	ci left: 3.821349e-05	ci right 5.947422e-05	k: 83	n:1730000
Cons ci ratio: 5.079789e-04	ci left: 9.715215e-01	ci right 9.720157e-01	k: 1681161	n:1730000
KS ci ratio: 1.239609e+00	ci left: 2.378831e-06	ci right 9.875586e-06	k: 9	n:1730000
PLA2G4E   1730000 perm   1535 sec   (1127 perm/sec)   p_kst 5.202312e-06   p_cons 9.717694e-01   p_joint 4.797688e-05

Joint ci ratio: 4.276966e-01	ci left: 3.799387e-05	ci right 5.913241e-05	k: 83	n:1740000
Cons ci ratio: 5.065632e-04	ci left: 9.715172e-01	ci right 9.720100e-01	k: 1690870	n:1740000
KS ci ratio: 1.239609e+00	ci left: 2.365160e-06	ci right 9.818830e-06	k: 9	n:1740000
PLA2G4E   1740000 perm   1551 sec   (1122 perm/sec)   p_kst 5.172414e-06   p_cons 9.717644e-01   p_joint 4.770115e-05

Joint ci ratio: 4.226940e-01	ci left: 3.879731e-05	ci right 6.005898e-05	k: 85	n:1750000
Cons ci ratio: 5.050803e-04	ci left: 9.715215e-01	ci right 9.720129e-01	k: 1700594	n:1750000
KS ci ratio: 1.239609e+00	ci left: 2.351644e-06	ci right 9.762722e-06	k: 9	n:1750000
PLA2G4E   1750000 perm   1566 sec   (1117 perm/sec)   p_kst 5.142857e-06   p_cons 9.717680e-01   p_joint 4.857143e-05

Joint ci ratio: 4.226940e-01	ci left: 3.857687e-05	ci right 5.971774e-05	k: 85	n:1760000
Cons ci ratio: 5.036834e-04	ci left: 9.715179e-01	ci right 9.720079e-01	k: 1710304	n:1760000
KS ci ratio: 1.239609e+00	ci left: 2.338283e-06	ci right 9.707252e-06	k: 9	n:1760000
PLA2G4E   1760000 perm   1582 sec   (1113 perm/sec)   p_kst 5.113636e-06   p_cons 9.717636e-01   p_joint 4.829545e-05

Joint ci ratio: 4.226941e-01	ci left: 3.835892e-05	ci right 5.938035e-05	k: 85	n:1770000
Cons ci ratio: 5.022463e-04	ci left: 9.715199e-01	ci right 9.720085e-01	k: 1720024	n:1770000
KS ci ratio: 1.239609e+00	ci left: 2.325072e-06	ci right 9.652409e-06	k: 9	n:1770000
PLA2G4E   1770000 perm   1598 sec   (1108 perm/sec)   p_kst 5.084746e-06   p_cons 9.717650e-01   p_joint 4.802260e-05

Joint ci ratio: 4.202577e-01	ci left: 3.864562e-05	ci right 5.966781e-05	k: 86	n:1780000
Cons ci ratio: 5.007804e-04	ci left: 9.715264e-01	ci right 9.720136e-01	k: 1729752	n:1780000
KS ci ratio: 1.239609e+00	ci left: 2.312010e-06	ci right 9.598182e-06	k: 9	n:1780000
PLA2G4E   1780000 perm   1614 sec   (1103 perm/sec)   p_kst 5.056180e-06   p_cons 9.717708e-01   p_joint 4.831461e-05

Joint ci ratio: 4.202578e-01	ci left: 3.842973e-05	ci right 5.933447e-05	k: 86	n:1790000
Cons ci ratio: 4.994036e-04	ci left: 9.715245e-01	ci right 9.720103e-01	k: 1739465	n:1790000
KS ci ratio: 1.239609e+00	ci left: 2.299094e-06	ci right 9.544561e-06	k: 9	n:1790000
PLA2G4E   1790000 perm   1630 sec   (1098 perm/sec)   p_kst 5.027933e-06   p_cons 9.717682e-01   p_joint 4.804469e-05

Joint ci ratio: 4.178631e-01	ci left: 3.871319e-05	ci right 5.961865e-05	k: 87	n:1800000
Cons ci ratio: 4.980430e-04	ci left: 9.715220e-01	ci right 9.720065e-01	k: 1749177	n:1800000
KS ci ratio: 1.181921e+00	ci left: 2.664108e-06	ci right 1.021684e-05	k: 10	n:1800000
PLA2G4E   1800000 perm   1646 sec   (1094 perm/sec)   p_kst 5.555556e-06   p_cons 9.717650e-01   p_joint 4.833333e-05

Joint ci ratio: 4.178631e-01	ci left: 3.849931e-05	ci right 5.928927e-05	k: 87	n:1810000
Cons ci ratio: 4.967335e-04	ci left: 9.715151e-01	ci right 9.719983e-01	k: 1758881	n:1810000
KS ci ratio: 1.181921e+00	ci left: 2.649389e-06	ci right 1.016039e-05	k: 10	n:1810000
PLA2G4E   1810000 perm   1662 sec   (1089 perm/sec)   p_kst 5.524862e-06   p_cons 9.717575e-01   p_joint 4.806630e-05

Joint ci ratio: 4.178632e-01	ci left: 3.828777e-05	ci right 5.896351e-05	k: 87	n:1820000
Cons ci ratio: 4.953103e-04	ci left: 9.715221e-01	ci right 9.720039e-01	k: 1768610	n:1820000
KS ci ratio: 1.181921e+00	ci left: 2.634832e-06	ci right 1.010457e-05	k: 10	n:1820000
PLA2G4E   1820000 perm   1678 sec   (1085 perm/sec)   p_kst 5.494505e-06   p_cons 9.717637e-01   p_joint 4.780220e-05

Joint ci ratio: 4.178632e-01	ci left: 3.807855e-05	ci right 5.864130e-05	k: 87	n:1830000
Cons ci ratio: 4.938550e-04	ci left: 9.715339e-01	ci right 9.720143e-01	k: 1778348	n:1830000
KS ci ratio: 1.181921e+00	ci left: 2.620434e-06	ci right 1.004935e-05	k: 10	n:1830000
PLA2G4E   1830000 perm   1694 sec   (1080 perm/sec)   p_kst 5.464481e-06   p_cons 9.717749e-01   p_joint 4.754098e-05

Joint ci ratio: 4.178633e-01	ci left: 3.787160e-05	ci right 5.832260e-05	k: 87	n:1840000
Cons ci ratio: 4.926075e-04	ci left: 9.715238e-01	ci right 9.720030e-01	k: 1788046	n:1840000
KS ci ratio: 1.181921e+00	ci left: 2.606192e-06	ci right 9.994736e-06	k: 10	n:1840000
PLA2G4E   1840000 perm   1711 sec   (1076 perm/sec)   p_kst 5.434783e-06   p_cons 9.717641e-01   p_joint 4.728261e-05

Joint ci ratio: 4.178634e-01	ci left: 3.766689e-05	ci right 5.800735e-05	k: 87	n:1850000
Cons ci ratio: 4.912919e-04	ci left: 9.715224e-01	ci right 9.720004e-01	k: 1797760	n:1850000
KS ci ratio: 1.181921e+00	ci left: 2.592105e-06	ci right 9.940710e-06	k: 10	n:1850000
PLA2G4E   1850000 perm   1727 sec   (1071 perm/sec)   p_kst 5.405405e-06   p_cons 9.717622e-01   p_joint 4.702703e-05

Joint ci ratio: 4.178634e-01	ci left: 3.746438e-05	ci right 5.769548e-05	k: 87	n:1860000
Cons ci ratio: 4.898620e-04	ci left: 9.715352e-01	ci right 9.720117e-01	k: 1807500	n:1860000
KS ci ratio: 1.181921e+00	ci left: 2.578169e-06	ci right 9.887266e-06	k: 10	n:1860000
PLA2G4E   1860000 perm   1744 sec   (1066 perm/sec)   p_kst 5.376344e-06   p_cons 9.717742e-01   p_joint 4.677419e-05

Joint ci ratio: 4.178635e-01	ci left: 3.726403e-05	ci right 5.738695e-05	k: 87	n:1870000
Cons ci ratio: 4.885683e-04	ci left: 9.715338e-01	ci right 9.720091e-01	k: 1817214	n:1870000
KS ci ratio: 1.181921e+00	ci left: 2.564382e-06	ci right 9.834393e-06	k: 10	n:1870000
PLA2G4E   1870000 perm   1761 sec   (1062 perm/sec)   p_kst 5.347594e-06   p_cons 9.717722e-01   p_joint 4.652406e-05

Joint ci ratio: 4.226947e-01	ci left: 3.611451e-05	ci right 5.590599e-05	k: 85	n:1880000
Cons ci ratio: 4.873178e-04	ci left: 9.715287e-01	ci right 9.720028e-01	k: 1826921	n:1880000
KS ci ratio: 1.181921e+00	ci left: 2.550742e-06	ci right 9.782082e-06	k: 10	n:1880000
PLA2G4E   1880000 perm   1778 sec   (1058 perm/sec)   p_kst 5.319149e-06   p_cons 9.717665e-01   p_joint 4.521277e-05

Joint ci ratio: 4.202583e-01	ci left: 3.639640e-05	ci right 5.619510e-05	k: 86	n:1890000
Cons ci ratio: 4.862595e-04	ci left: 9.715030e-01	ci right 9.719760e-01	k: 1836589	n:1890000
KS ci ratio: 1.181921e+00	ci left: 2.537246e-06	ci right 9.730326e-06	k: 10	n:1890000
PLA2G4E   1890000 perm   1795 sec   (1053 perm/sec)   p_kst 5.291005e-06   p_cons 9.717402e-01   p_joint 4.550265e-05

Joint ci ratio: 4.202584e-01	ci left: 3.620484e-05	ci right 5.589933e-05	k: 86	n:1900000
Cons ci ratio: 4.849243e-04	ci left: 9.715097e-01	ci right 9.719815e-01	k: 1846318	n:1900000
KS ci ratio: 1.181921e+00	ci left: 2.523892e-06	ci right 9.679113e-06	k: 10	n:1900000
PLA2G4E   1900000 perm   1812 sec   (1049 perm/sec)   p_kst 5.263158e-06   p_cons 9.717463e-01   p_joint 4.526316e-05

Joint ci ratio: 4.202584e-01	ci left: 3.601528e-05	ci right 5.560667e-05	k: 86	n:1910000
Cons ci ratio: 4.836138e-04	ci left: 9.715148e-01	ci right 9.719853e-01	k: 1856044	n:1910000
KS ci ratio: 1.181921e+00	ci left: 2.510677e-06	ci right 9.628438e-06	k: 10	n:1910000
PLA2G4E   1910000 perm   1829 sec   (1044 perm/sec)   p_kst 5.235602e-06   p_cons 9.717508e-01   p_joint 4.502618e-05

Joint ci ratio: 4.178637e-01	ci left: 3.629361e-05	ci right 5.589251e-05	k: 87	n:1920000
Cons ci ratio: 4.823230e-04	ci left: 9.715189e-01	ci right 9.719881e-01	k: 1865768	n:1920000
KS ci ratio: 1.181921e+00	ci left: 2.497601e-06	ci right 9.578290e-06	k: 10	n:1920000
PLA2G4E   1920000 perm   1846 sec   (1040 perm/sec)   p_kst 5.208333e-06   p_cons 9.717542e-01   p_joint 4.531250e-05

Joint ci ratio: 4.178638e-01	ci left: 3.610556e-05	ci right 5.560291e-05	k: 87	n:1930000
Cons ci ratio: 4.809971e-04	ci left: 9.715280e-01	ci right 9.719959e-01	k: 1875502	n:1930000
KS ci ratio: 1.181921e+00	ci left: 2.484660e-06	ci right 9.528661e-06	k: 10	n:1930000
PLA2G4E   1930000 perm   1867 sec   (1034 perm/sec)   p_kst 5.181347e-06   p_cons 9.717627e-01   p_joint 4.507772e-05

Joint ci ratio: 4.685210e-01	ci left: 2.767336e-05	ci right 4.501212e-05	k: 69	n:1940000
Cons ci ratio: 4.523617e-04	ci left: 9.745950e-01	ci right 9.750365e-01	k: 1891144	n:1940000
KS ci ratio: 1.181921e+00	ci left: 2.471853e-06	ci right 9.479544e-06	k: 10	n:1940000
PLA2G4E   1940000 perm   1887 sec   (1028 perm/sec)   p_kst 5.154639e-06   p_cons 9.748165e-01   p_joint 3.556701e-05

Joint ci ratio: 4.685211e-01	ci left: 2.753144e-05	ci right 4.478129e-05	k: 69	n:1950000
Cons ci ratio: 4.511681e-04	ci left: 9.745991e-01	ci right 9.750394e-01	k: 1900899	n:1950000
KS ci ratio: 1.181921e+00	ci left: 2.459176e-06	ci right 9.430932e-06	k: 10	n:1950000
PLA2G4E   1950000 perm   1907 sec   (1022 perm/sec)   p_kst 5.128205e-06   p_cons 9.748200e-01   p_joint 3.538462e-05

Joint ci ratio: 4.685211e-01	ci left: 2.739098e-05	ci right 4.455281e-05	k: 69	n:1960000
Cons ci ratio: 4.499652e-04	ci left: 9.746052e-01	ci right 9.750444e-01	k: 1910658	n:1960000
KS ci ratio: 1.181921e+00	ci left: 2.446630e-06	ci right 9.382815e-06	k: 10	n:1960000
PLA2G4E   1960000 perm   1924 sec   (1018 perm/sec)   p_kst 5.102041e-06   p_cons 9.748255e-01   p_joint 3.520408e-05

Joint ci ratio: 4.652099e-01	ci left: 2.769981e-05	ci right 4.489359e-05	k: 70	n:1970000
Cons ci ratio: 4.488275e-04	ci left: 9.746052e-01	ci right 9.750432e-01	k: 1920405	n:1970000
KS ci ratio: 1.181921e+00	ci left: 2.434210e-06	ci right 9.335186e-06	k: 10	n:1970000
PLA2G4E   1970000 perm   1942 sec   (1015 perm/sec)   p_kst 5.076142e-06   p_cons 9.748249e-01   p_joint 3.553299e-05

Joint ci ratio: 4.652100e-01	ci left: 2.755992e-05	ci right 4.466686e-05	k: 70	n:1980000
Cons ci ratio: 4.476753e-04	ci left: 9.746076e-01	ci right 9.750445e-01	k: 1930157	n:1980000
KS ci ratio: 1.181921e+00	ci left: 2.421916e-06	ci right 9.288039e-06	k: 10	n:1980000
PLA2G4E   1980000 perm   1959 sec   (1011 perm/sec)   p_kst 5.050505e-06   p_cons 9.748268e-01   p_joint 3.535354e-05

Joint ci ratio: 4.652100e-01	ci left: 2.742142e-05	ci right 4.444240e-05	k: 70	n:1990000
Cons ci ratio: 4.464497e-04	ci left: 9.746191e-01	ci right 9.750549e-01	k: 1939927	n:1990000
KS ci ratio: 1.181921e+00	ci left: 2.409746e-06	ci right 9.241365e-06	k: 10	n:1990000
PLA2G4E   1990000 perm   1977 sec   (1007 perm/sec)   p_kst 5.025126e-06   p_cons 9.748377e-01   p_joint 3.517588e-05

Joint ci ratio: 4.652100e-01	ci left: 2.728432e-05	ci right 4.422019e-05	k: 70	n:2000000
Cons ci ratio: 4.453838e-04	ci left: 9.746140e-01	ci right 9.750486e-01	k: 1949664	n:2000000
KS ci ratio: 1.181921e+00	ci left: 2.397697e-06	ci right 9.195159e-06	k: 10	n:2000000
PLA2G4E   2000000 perm   1995 sec   (1003 perm/sec)   p_kst 5.000000e-06   p_cons 9.748320e-01   p_joint 3.500000e-05

Joint ci ratio: 4.652101e-01	ci left: 2.714857e-05	ci right 4.400019e-05	k: 70	n:2010000
Cons ci ratio: 4.441948e-04	ci left: 9.746234e-01	ci right 9.750569e-01	k: 1959430	n:2010000
KS ci ratio: 1.181921e+00	ci left: 2.385768e-06	ci right 9.149412e-06	k: 10	n:2010000
PLA2G4E   2010000 perm   2015 sec   (998 perm/sec)   p_kst 4.975124e-06   p_cons 9.748408e-01   p_joint 3.482587e-05

Joint ci ratio: 4.652101e-01	ci left: 2.701417e-05	ci right 4.378237e-05	k: 70	n:2020000
Cons ci ratio: 4.431539e-04	ci left: 9.746172e-01	ci right 9.750497e-01	k: 1969165	n:2020000
KS ci ratio: 1.181921e+00	ci left: 2.373957e-06	ci right 9.104118e-06	k: 10	n:2020000
PLA2G4E   2020000 perm   2037 sec   (992 perm/sec)   p_kst 4.950495e-06   p_cons 9.748342e-01   p_joint 3.465347e-05

Joint ci ratio: 4.652102e-01	ci left: 2.688110e-05	ci right 4.356669e-05	k: 70	n:2030000
Cons ci ratio: 4.420803e-04	ci left: 9.746156e-01	ci right 9.750471e-01	k: 1978909	n:2030000
KS ci ratio: 1.181921e+00	ci left: 2.362263e-06	ci right 9.059270e-06	k: 10	n:2030000
PLA2G4E   2030000 perm   2055 sec   (988 perm/sec)   p_kst 4.926108e-06   p_cons 9.748320e-01   p_joint 3.448276e-05

Joint ci ratio: 4.619682e-01	ci left: 2.718225e-05	ci right 4.390021e-05	k: 71	n:2040000
Cons ci ratio: 4.410277e-04	ci left: 9.746126e-01	ci right 9.750430e-01	k: 1988650	n:2040000
KS ci ratio: 1.131603e+00	ci left: 2.691748e-06	ci right 9.648038e-06	k: 11	n:2040000
PLA2G4E   2040000 perm   2073 sec   (984 perm/sec)   p_kst 5.392157e-06   p_cons 9.748284e-01   p_joint 3.480392e-05

Joint ci ratio: 4.619682e-01	ci left: 2.704965e-05	ci right 4.368607e-05	k: 71	n:2050000
Cons ci ratio: 4.399694e-04	ci left: 9.746110e-01	ci right 9.750404e-01	k: 1998394	n:2050000
KS ci ratio: 1.131603e+00	ci left: 2.678618e-06	ci right 9.600974e-06	k: 11	n:2050000
PLA2G4E   2050000 perm   2091 sec   (980 perm/sec)   p_kst 5.365854e-06   p_cons 9.748263e-01   p_joint 3.463415e-05

Joint ci ratio: 4.619682e-01	ci left: 2.691834e-05	ci right 4.347400e-05	k: 71	n:2060000
Cons ci ratio: 4.389578e-04	ci left: 9.746050e-01	ci right 9.750334e-01	k: 2008129	n:2060000
KS ci ratio: 1.131603e+00	ci left: 2.665615e-06	ci right 9.554367e-06	k: 11	n:2060000
PLA2G4E   2060000 perm   2110 sec   (976 perm/sec)   p_kst 5.339806e-06   p_cons 9.748199e-01   p_joint 3.446602e-05

Joint ci ratio: 4.587931e-01	ci left: 2.721535e-05	ci right 4.380274e-05	k: 72	n:2070000
Cons ci ratio: 4.379143e-04	ci left: 9.746035e-01	ci right 9.750309e-01	k: 2017873	n:2070000
KS ci ratio: 1.131603e+00	ci left: 2.652737e-06	ci right 9.508211e-06	k: 11	n:2070000
PLA2G4E   2070000 perm   2128 sec   (973 perm/sec)   p_kst 5.314010e-06   p_cons 9.748179e-01   p_joint 3.478261e-05

Joint ci ratio: 4.587931e-01	ci left: 2.708450e-05	ci right 4.359215e-05	k: 72	n:2080000
Cons ci ratio: 4.369252e-04	ci left: 9.745967e-01	ci right 9.750231e-01	k: 2027606	n:2080000
KS ci ratio: 1.131603e+00	ci left: 2.639984e-06	ci right 9.462499e-06	k: 11	n:2080000
PLA2G4E   2080000 perm   2146 sec   (969 perm/sec)   p_kst 5.288462e-06   p_cons 9.748106e-01   p_joint 3.461538e-05

Joint ci ratio: 4.587932e-01	ci left: 2.695491e-05	ci right 4.338358e-05	k: 72	n:2090000
Cons ci ratio: 4.358749e-04	ci left: 9.745977e-01	ci right 9.750230e-01	k: 2037355	n:2090000
KS ci ratio: 1.131603e+00	ci left: 2.627352e-06	ci right 9.417224e-06	k: 11	n:2090000
PLA2G4E   2090000 perm   2164 sec   (966 perm/sec)   p_kst 5.263158e-06   p_cons 9.748110e-01   p_joint 3.444976e-05

Joint ci ratio: 4.587932e-01	ci left: 2.682655e-05	ci right 4.317699e-05	k: 72	n:2100000
Cons ci ratio: 4.347941e-04	ci left: 9.746029e-01	ci right 9.750272e-01	k: 2047113	n:2100000
KS ci ratio: 1.131603e+00	ci left: 2.614841e-06	ci right 9.372380e-06	k: 11	n:2100000
PLA2G4E   2100000 perm   2183 sec   (962 perm/sec)   p_kst 5.238095e-06   p_cons 9.748157e-01   p_joint 3.428571e-05

Joint ci ratio: 4.587933e-01	ci left: 2.669941e-05	ci right 4.297236e-05	k: 72	n:2110000
Cons ci ratio: 4.337004e-04	ci left: 9.746105e-01	ci right 9.750337e-01	k: 2056876	n:2110000
KS ci ratio: 1.131603e+00	ci left: 2.602448e-06	ci right 9.327961e-06	k: 11	n:2110000
PLA2G4E   2110000 perm   2202 sec   (958 perm/sec)   p_kst 5.213270e-06   p_cons 9.748227e-01   p_joint 3.412322e-05

Joint ci ratio: 4.556827e-01	ci left: 2.699082e-05	ci right 4.329535e-05	k: 73	n:2120000
Cons ci ratio: 4.326731e-04	ci left: 9.746113e-01	ci right 9.750336e-01	k: 2066625	n:2120000
KS ci ratio: 1.131603e+00	ci left: 2.590173e-06	ci right 9.283961e-06	k: 11	n:2120000
PLA2G4E   2120000 perm   2221 sec   (955 perm/sec)   p_kst 5.188679e-06   p_cons 9.748231e-01   p_joint 3.443396e-05

Joint ci ratio: 4.556827e-01	ci left: 2.686411e-05	ci right 4.309208e-05	k: 73	n:2130000
Cons ci ratio: 4.316613e-04	ci left: 9.746113e-01	ci right 9.750325e-01	k: 2076372	n:2130000
KS ci ratio: 1.131603e+00	ci left: 2.578012e-06	ci right 9.240375e-06	k: 11	n:2130000
PLA2G4E   2130000 perm   2240 sec   (951 perm/sec)   p_kst 5.164319e-06   p_cons 9.748225e-01   p_joint 3.427230e-05

Joint ci ratio: 4.556828e-01	ci left: 2.673857e-05	ci right 4.289072e-05	k: 73	n:2140000
Cons ci ratio: 4.305623e-04	ci left: 9.746220e-01	ci right 9.750422e-01	k: 2086142	n:2140000
KS ci ratio: 1.131603e+00	ci left: 2.565965e-06	ci right 9.197196e-06	k: 11	n:2140000
PLA2G4E   2140000 perm   2259 sec   (947 perm/sec)   p_kst 5.140187e-06   p_cons 9.748327e-01   p_joint 3.411215e-05

Joint ci ratio: 4.556828e-01	ci left: 2.661421e-05	ci right 4.269123e-05	k: 73	n:2150000
Cons ci ratio: 4.296466e-04	ci left: 9.746125e-01	ci right 9.750318e-01	k: 2095869	n:2150000
KS ci ratio: 1.131603e+00	ci left: 2.554031e-06	ci right 9.154418e-06	k: 11	n:2150000
PLA2G4E   2150000 perm   2281 sec   (942 perm/sec)   p_kst 5.116279e-06   p_cons 9.748228e-01   p_joint 3.395349e-05

Joint ci ratio: 4.526346e-01	ci left: 2.690098e-05	ci right 4.300917e-05	k: 74	n:2160000
Cons ci ratio: 4.286680e-04	ci left: 9.746110e-01	ci right 9.750294e-01	k: 2105613	n:2160000
KS ci ratio: 1.131603e+00	ci left: 2.542207e-06	ci right 9.112037e-06	k: 11	n:2160000
PLA2G4E   2160000 perm   2301 sec   (939 perm/sec)   p_kst 5.092593e-06   p_cons 9.748208e-01   p_joint 3.425926e-05

Joint ci ratio: 4.526347e-01	ci left: 2.677701e-05	ci right 4.281098e-05	k: 74	n:2170000
Cons ci ratio: 4.276117e-04	ci left: 9.746193e-01	ci right 9.750366e-01	k: 2115378	n:2170000
KS ci ratio: 1.131603e+00	ci left: 2.530491e-06	ci right 9.070046e-06	k: 11	n:2170000
PLA2G4E   2170000 perm   2320 sec   (935 perm/sec)   p_kst 5.069124e-06   p_cons 9.748286e-01   p_joint 3.410138e-05

Joint ci ratio: 4.526347e-01	ci left: 2.665418e-05	ci right 4.261460e-05	k: 74	n:2180000
Cons ci ratio: 4.266987e-04	ci left: 9.746118e-01	ci right 9.750282e-01	k: 2125109	n:2180000
KS ci ratio: 1.131603e+00	ci left: 2.518884e-06	ci right 9.028440e-06	k: 11	n:2180000
PLA2G4E   2180000 perm   2339 sec   (932 perm/sec)   p_kst 5.045872e-06   p_cons 9.748206e-01   p_joint 3.394495e-05

Joint ci ratio: 4.526348e-01	ci left: 2.653247e-05	ci right 4.242001e-05	k: 74	n:2190000
Cons ci ratio: 4.257598e-04	ci left: 9.746081e-01	ci right 9.750236e-01	k: 2134848	n:2190000
KS ci ratio: 1.131603e+00	ci left: 2.507382e-06	ci right 8.987214e-06	k: 11	n:2190000
PLA2G4E   2190000 perm   2359 sec   (929 perm/sec)   p_kst 5.022831e-06   p_cons 9.748164e-01   p_joint 3.378995e-05

Joint ci ratio: 4.526348e-01	ci left: 2.641187e-05	ci right 4.222719e-05	k: 74	n:2200000
Cons ci ratio: 4.248704e-04	ci left: 9.745993e-01	ci right 9.750140e-01	k: 2144576	n:2200000
KS ci ratio: 1.131603e+00	ci left: 2.495985e-06	ci right 8.946363e-06	k: 11	n:2200000
PLA2G4E   2200000 perm   2378 sec   (925 perm/sec)   p_kst 5.000000e-06   p_cons 9.748073e-01   p_joint 3.363636e-05

Joint ci ratio: 4.526348e-01	ci left: 2.629236e-05	ci right 4.203612e-05	k: 74	n:2210000
Cons ci ratio: 4.237716e-04	ci left: 9.746157e-01	ci right 9.750292e-01	k: 2154359	n:2210000
KS ci ratio: 1.131603e+00	ci left: 2.484690e-06	ci right 8.905882e-06	k: 11	n:2210000
PLA2G4E   2210000 perm   2397 sec   (922 perm/sec)   p_kst 4.977376e-06   p_cons 9.748231e-01   p_joint 3.348416e-05

Joint ci ratio: 4.526349e-01	ci left: 2.617392e-05	ci right 4.184677e-05	k: 74	n:2220000
Cons ci ratio: 4.228597e-04	ci left: 9.746111e-01	ci right 9.750237e-01	k: 2164096	n:2220000
KS ci ratio: 1.131603e+00	ci left: 2.473498e-06	ci right 8.865766e-06	k: 11	n:2220000
PLA2G4E   2220000 perm   2417 sec   (919 perm/sec)   p_kst 4.954955e-06   p_cons 9.748180e-01   p_joint 3.333333e-05

Joint ci ratio: 4.526349e-01	ci left: 2.605655e-05	ci right 4.165912e-05	k: 74	n:2230000
Cons ci ratio: 4.218880e-04	ci left: 9.746142e-01	ci right 9.750259e-01	k: 2173850	n:2230000
KS ci ratio: 1.131603e+00	ci left: 2.462406e-06	ci right 8.826009e-06	k: 11	n:2230000
PLA2G4E   2230000 perm   2436 sec   (915 perm/sec)   p_kst 4.932735e-06   p_cons 9.748206e-01   p_joint 3.318386e-05

Joint ci ratio: 4.587937e-01	ci left: 2.514989e-05	ci right 4.047844e-05	k: 72	n:2240000
Cons ci ratio: 4.209537e-04	ci left: 9.746136e-01	ci right 9.750244e-01	k: 2183596	n:2240000
KS ci ratio: 1.131603e+00	ci left: 2.451413e-06	ci right 8.786607e-06	k: 11	n:2240000
PLA2G4E   2240000 perm   2456 sec   (912 perm/sec)   p_kst 4.910714e-06   p_cons 9.748196e-01   p_joint 3.214286e-05

Joint ci ratio: 4.556831e-01	ci left: 2.543135e-05	ci right 4.079385e-05	k: 73	n:2250000
Cons ci ratio: 4.199837e-04	ci left: 9.746180e-01	ci right 9.750279e-01	k: 2193353	n:2250000
KS ci ratio: 1.131603e+00	ci left: 2.440518e-06	ci right 8.747556e-06	k: 11	n:2250000
PLA2G4E   2250000 perm   2475 sec   (909 perm/sec)   p_kst 4.888889e-06   p_cons 9.748236e-01   p_joint 3.244444e-05

Joint ci ratio: 4.556832e-01	ci left: 2.531882e-05	ci right 4.061334e-05	k: 73	n:2260000
Cons ci ratio: 4.191073e-04	ci left: 9.746122e-01	ci right 9.750211e-01	k: 2203087	n:2260000
KS ci ratio: 1.131603e+00	ci left: 2.429719e-06	ci right 8.708850e-06	k: 11	n:2260000
PLA2G4E   2260000 perm   2495 sec   (906 perm/sec)   p_kst 4.867257e-06   p_cons 9.748173e-01   p_joint 3.230088e-05

Joint ci ratio: 4.526350e-01	ci left: 2.559740e-05	ci right 4.092504e-05	k: 74	n:2270000
Cons ci ratio: 4.181912e-04	ci left: 9.746116e-01	ci right 9.750197e-01	k: 2212833	n:2270000
KS ci ratio: 1.131603e+00	ci left: 2.419016e-06	ci right 8.670485e-06	k: 11	n:2270000
PLA2G4E   2270000 perm   2515 sec   (903 perm/sec)   p_kst 4.845815e-06   p_cons 9.748163e-01   p_joint 3.259912e-05

Joint ci ratio: 4.526351e-01	ci left: 2.548513e-05	ci right 4.074554e-05	k: 74	n:2280000
Cons ci ratio: 4.173818e-04	ci left: 9.745993e-01	ci right 9.750066e-01	k: 2222552	n:2280000
KS ci ratio: 1.131603e+00	ci left: 2.408406e-06	ci right 8.632457e-06	k: 11	n:2280000
PLA2G4E   2280000 perm   2535 sec   (900 perm/sec)   p_kst 4.824561e-06   p_cons 9.748035e-01   p_joint 3.245614e-05

Joint ci ratio: 4.556833e-01	ci left: 2.498713e-05	ci right 4.008129e-05	k: 73	n:2290000
Cons ci ratio: 4.165437e-04	ci left: 9.745909e-01	ci right 9.749974e-01	k: 2232280	n:2290000
KS ci ratio: 1.131603e+00	ci left: 2.397889e-06	ci right 8.594760e-06	k: 11	n:2290000
PLA2G4E   2290000 perm   2554 sec   (897 perm/sec)   p_kst 4.803493e-06   p_cons 9.747948e-01   p_joint 3.187773e-05

Joint ci ratio: 4.556833e-01	ci left: 2.487849e-05	ci right 3.990703e-05	k: 73	n:2300000
Cons ci ratio: 4.156553e-04	ci left: 9.745892e-01	ci right 9.749948e-01	k: 2242023	n:2300000
KS ci ratio: 1.131603e+00	ci left: 2.387463e-06	ci right 8.557392e-06	k: 11	n:2300000
PLA2G4E   2300000 perm   2574 sec   (894 perm/sec)   p_kst 4.782609e-06   p_cons 9.747926e-01   p_joint 3.173913e-05

Joint ci ratio: 4.526352e-01	ci left: 2.515416e-05	ci right 4.021638e-05	k: 74	n:2310000
Cons ci ratio: 4.147471e-04	ci left: 9.745906e-01	ci right 9.749953e-01	k: 2251773	n:2310000
KS ci ratio: 1.131603e+00	ci left: 2.377128e-06	ci right 8.520347e-06	k: 11	n:2310000
PLA2G4E   2310000 perm   2594 sec   (890 perm/sec)   p_kst 4.761905e-06   p_cons 9.747935e-01   p_joint 3.203463e-05

Joint ci ratio: 4.467180e-01	ci left: 2.581015e-05	ci right 4.100213e-05	k: 76	n:2320000
Cons ci ratio: 4.139101e-04	ci left: 9.745841e-01	ci right 9.749880e-01	k: 2261505	n:2320000
KS ci ratio: 1.131603e+00	ci left: 2.366882e-06	ci right 8.483621e-06	k: 11	n:2320000
PLA2G4E   2320000 perm   2614 sec   (887 perm/sec)   p_kst 4.741379e-06   p_cons 9.747866e-01   p_joint 3.275862e-05

Joint ci ratio: 2.282167e-01	ci left: 1.121684e-04	ci right 1.414583e-04	k: 294	n:2330000
Cons ci ratio: 4.130348e-04	ci left: 9.745829e-01	ci right 9.749859e-01	k: 2271249	n:2330000
KS ci ratio: 1.087209e+00	ci left: 2.661194e-06	ci right 8.996371e-06	k: 12	n:2330000
PLA2G4E   2330000 perm   2635 sec   (884 perm/sec)   p_kst 5.150215e-06   p_cons 9.747850e-01   p_joint 1.261803e-04

Joint ci ratio: 2.282168e-01	ci left: 1.116890e-04	ci right 1.408538e-04	k: 294	n:2340000
Cons ci ratio: 4.120899e-04	ci left: 9.745907e-01	ci right 9.749928e-01	k: 2281014	n:2340000
KS ci ratio: 1.087209e+00	ci left: 2.649821e-06	ci right 8.957925e-06	k: 12	n:2340000
PLA2G4E   2340000 perm   2655 sec   (881 perm/sec)   p_kst 5.128205e-06   p_cons 9.747923e-01   p_joint 1.256410e-04

Joint ci ratio: 2.282168e-01	ci left: 1.112138e-04	ci right 1.402544e-04	k: 294	n:2350000
Cons ci ratio: 4.112047e-04	ci left: 9.745920e-01	ci right 9.749932e-01	k: 2290764	n:2350000
KS ci ratio: 1.087209e+00	ci left: 2.638545e-06	ci right 8.919806e-06	k: 12	n:2350000
PLA2G4E   2350000 perm   2676 sec   (878 perm/sec)   p_kst 5.106383e-06   p_cons 9.747932e-01   p_joint 1.251064e-04

Joint ci ratio: 2.286048e-01	ci left: 1.103430e-04	ci right 1.392122e-04	k: 293	n:2360000
Cons ci ratio: 4.102828e-04	ci left: 9.745984e-01	ci right 9.749987e-01	k: 2300526	n:2360000
KS ci ratio: 1.087209e+00	ci left: 2.627365e-06	ci right 8.882011e-06	k: 12	n:2360000
PLA2G4E   2360000 perm   2696 sec   (875 perm/sec)   p_kst 5.084746e-06   p_cons 9.747992e-01   p_joint 1.241525e-04

Joint ci ratio: 2.309741e-01	ci left: 1.074915e-04	ci right 1.359477e-04	k: 287	n:2370000
Cons ci ratio: 4.093600e-04	ci left: 9.746056e-01	ci right 9.750051e-01	k: 2310290	n:2370000
KS ci ratio: 1.047661e+00	ci left: 2.920658e-06	ci right 9.379896e-06	k: 13	n:2370000
PLA2G4E   2370000 perm   2717 sec   (872 perm/sec)   p_kst 5.485232e-06   p_cons 9.748059e-01   p_joint 1.210970e-04

Joint ci ratio: 2.309742e-01	ci left: 1.070398e-04	ci right 1.353765e-04	k: 287	n:2380000
Cons ci ratio: 4.084644e-04	ci left: 9.746102e-01	ci right 9.750088e-01	k: 2320048	n:2380000
KS ci ratio: 1.047661e+00	ci left: 2.908387e-06	ci right 9.340484e-06	k: 13	n:2380000
PLA2G4E   2380000 perm   2738 sec   (869 perm/sec)   p_kst 5.462185e-06   p_cons 9.748101e-01   p_joint 1.205882e-04

Joint ci ratio: 2.309742e-01	ci left: 1.065920e-04	ci right 1.348101e-04	k: 287	n:2390000
Cons ci ratio: 4.077551e-04	ci left: 9.745930e-01	ci right 9.749908e-01	k: 2329754	n:2390000
KS ci ratio: 1.047661e+00	ci left: 2.896218e-06	ci right 9.301403e-06	k: 13	n:2390000
PLA2G4E   2390000 perm   2758 sec   (866 perm/sec)   p_kst 5.439331e-06   p_cons 9.747925e-01   p_joint 1.200837e-04

Joint ci ratio: 2.309743e-01	ci left: 1.061478e-04	ci right 1.342484e-04	k: 287	n:2400000
Cons ci ratio: 4.069493e-04	ci left: 9.745880e-01	ci right 9.749851e-01	k: 2339489	n:2400000
KS ci ratio: 1.047661e+00	ci left: 2.884150e-06	ci right 9.262647e-06	k: 13	n:2400000
PLA2G4E   2400000 perm   2779 sec   (863 perm/sec)   p_kst 5.416667e-06   p_cons 9.747871e-01   p_joint 1.195833e-04

Joint ci ratio: 2.301764e-01	ci left: 1.064893e-04	ci right 1.345691e-04	k: 289	n:2410000
Cons ci ratio: 4.060660e-04	ci left: 9.745930e-01	ci right 9.749892e-01	k: 2349248	n:2410000
KS ci ratio: 1.047661e+00	ci left: 2.872182e-06	ci right 9.224213e-06	k: 13	n:2410000
PLA2G4E   2410000 perm   2801 sec   (860 perm/sec)   p_kst 5.394191e-06   p_cons 9.747917e-01   p_joint 1.199170e-04

Joint ci ratio: 2.301765e-01	ci left: 1.060493e-04	ci right 1.340130e-04	k: 289	n:2420000
Cons ci ratio: 4.051884e-04	ci left: 9.745980e-01	ci right 9.749934e-01	k: 2359007	n:2420000
KS ci ratio: 1.047661e+00	ci left: 2.860314e-06	ci right 9.186096e-06	k: 13	n:2420000
PLA2G4E   2420000 perm   2822 sec   (858 perm/sec)   p_kst 5.371901e-06   p_cons 9.747963e-01   p_joint 1.194215e-04

Joint ci ratio: 2.313766e-01	ci left: 1.044497e-04	ci right 1.321557e-04	k: 286	n:2430000
Cons ci ratio: 4.042520e-04	ci left: 9.746108e-01	ci right 9.750053e-01	k: 2368785	n:2430000
KS ci ratio: 1.047661e+00	ci left: 2.848543e-06	ci right 9.148294e-06	k: 13	n:2430000
PLA2G4E   2430000 perm   2843 sec   (855 perm/sec)   p_kst 5.349794e-06   p_cons 9.748086e-01   p_joint 1.176955e-04

Joint ci ratio: 2.301766e-01	ci left: 1.051800e-04	ci right 1.329145e-04	k: 289	n:2440000
Cons ci ratio: 4.032985e-04	ci left: 9.746264e-01	ci right 9.750200e-01	k: 2378570	n:2440000
KS ci ratio: 1.012136e+00	ci left: 3.136860e-06	ci right 9.626875e-06	k: 14	n:2440000
PLA2G4E   2440000 perm   2864 sec   (852 perm/sec)   p_kst 5.737705e-06   p_cons 9.748238e-01   p_joint 1.184426e-04

Joint ci ratio: 2.297808e-01	ci left: 1.051354e-04	ci right 1.328037e-04	k: 290	n:2450000
Cons ci ratio: 4.025524e-04	ci left: 9.746173e-01	ci right 9.750101e-01	k: 2388295	n:2450000
KS ci ratio: 1.012136e+00	ci left: 3.124057e-06	ci right 9.587582e-06	k: 14	n:2450000
PLA2G4E   2450000 perm   2885 sec   (849 perm/sec)   p_kst 5.714286e-06   p_cons 9.748143e-01   p_joint 1.183673e-04

Joint ci ratio: 2.297808e-01	ci left: 1.047080e-04	ci right 1.322638e-04	k: 290	n:2460000
Cons ci ratio: 4.017072e-04	ci left: 9.746209e-01	ci right 9.750129e-01	k: 2398051	n:2460000
KS ci ratio: 1.012136e+00	ci left: 3.111357e-06	ci right 9.548608e-06	k: 14	n:2460000
PLA2G4E   2460000 perm   2907 sec   (846 perm/sec)   p_kst 5.691057e-06   p_cons 9.748175e-01   p_joint 1.178862e-04

Joint ci ratio: 2.293870e-01	ci left: 1.046657e-04	ci right 1.321564e-04	k: 291	n:2470000
Cons ci ratio: 4.008541e-04	ci left: 9.746261e-01	ci right 9.750173e-01	k: 2407811	n:2470000
KS ci ratio: 1.012136e+00	ci left: 3.098761e-06	ci right 9.509950e-06	k: 14	n:2470000
PLA2G4E   2470000 perm   2928 sec   (844 perm/sec)   p_kst 5.668016e-06   p_cons 9.748223e-01   p_joint 1.178138e-04

Joint ci ratio: 2.289953e-01	ci left: 1.046237e-04	ci right 1.320499e-04	k: 292	n:2480000
Cons ci ratio: 4.000721e-04	ci left: 9.746232e-01	ci right 9.750136e-01	k: 2417551	n:2480000
KS ci ratio: 1.012136e+00	ci left: 3.086266e-06	ci right 9.471603e-06	k: 14	n:2480000
PLA2G4E   2480000 perm   2949 sec   (841 perm/sec)   p_kst 5.645161e-06   p_cons 9.748190e-01   p_joint 1.177419e-04

Joint ci ratio: 2.286055e-01	ci left: 1.045821e-04	ci right 1.319442e-04	k: 293	n:2490000
Cons ci ratio: 3.993306e-04	ci left: 9.746159e-01	ci right 9.750055e-01	k: 2427280	n:2490000
KS ci ratio: 9.799967e-01	ci left: 3.371645e-06	ci right 9.935811e-06	k: 15	n:2490000
PLA2G4E   2490000 perm   2971 sec   (838 perm/sec)   p_kst 6.024096e-06   p_cons 9.748112e-01   p_joint 1.176707e-04

Joint ci ratio: 2.274479e-01	ci left: 1.052952e-04	ci right 1.326848e-04	k: 296	n:2500000
Cons ci ratio: 3.985153e-04	ci left: 9.746182e-01	ci right 9.750071e-01	k: 2437033	n:2500000
KS ci ratio: 9.799967e-01	ci left: 3.358158e-06	ci right 9.896068e-06	k: 15	n:2500000
PLA2G4E   2500000 perm   2992 sec   (836 perm/sec)   p_kst 6.000000e-06   p_cons 9.748132e-01   p_joint 1.184000e-04

Joint ci ratio: 2.270660e-01	ci left: 1.052515e-04	ci right 1.325772e-04	k: 297	n:2510000
Cons ci ratio: 3.977888e-04	ci left: 9.746102e-01	ci right 9.749983e-01	k: 2446760	n:2510000
KS ci ratio: 9.799967e-01	ci left: 3.344779e-06	ci right 9.856642e-06	k: 15	n:2510000
PLA2G4E   2510000 perm   3014 sec   (833 perm/sec)   p_kst 5.976096e-06   p_cons 9.748048e-01   p_joint 1.183267e-04

Joint ci ratio: 2.266860e-01	ci left: 1.052081e-04	ci right 1.324705e-04	k: 298	n:2520000
Cons ci ratio: 3.968610e-04	ci left: 9.746277e-01	ci right 9.750149e-01	k: 2456551	n:2520000
KS ci ratio: 9.799967e-01	ci left: 3.331506e-06	ci right 9.817528e-06	k: 15	n:2520000
PLA2G4E   2520000 perm   3035 sec   (830 perm/sec)   p_kst 5.952381e-06   p_cons 9.748218e-01   p_joint 1.182540e-04

Joint ci ratio: 2.263078e-01	ci left: 1.051651e-04	ci right 1.323645e-04	k: 299	n:2530000
Cons ci ratio: 3.960574e-04	ci left: 9.746303e-01	ci right 9.750168e-01	k: 2466305	n:2530000
KS ci ratio: 9.799967e-01	ci left: 3.318338e-06	ci right 9.778724e-06	k: 15	n:2530000
PLA2G4E   2530000 perm   3057 sec   (828 perm/sec)   p_kst 5.928854e-06   p_cons 9.748241e-01   p_joint 1.181818e-04

Joint ci ratio: 2.270661e-01	ci left: 1.040083e-04	ci right 1.310114e-04	k: 297	n:2540000
Cons ci ratio: 3.953824e-04	ci left: 9.746176e-01	ci right 9.750034e-01	k: 2476020	n:2540000
KS ci ratio: 9.799967e-01	ci left: 3.305274e-06	ci right 9.740225e-06	k: 15	n:2540000
PLA2G4E   2540000 perm   3079 sec   (825 perm/sec)   p_kst 5.905512e-06   p_cons 9.748110e-01   p_joint 1.169291e-04

Joint ci ratio: 2.376722e-01	ci left: 9.399752e-05	ci right 1.197094e-04	k: 271	n:2550000
Cons ci ratio: 3.946382e-04	ci left: 9.746140e-01	ci right 9.749991e-01	k: 2485758	n:2550000
KS ci ratio: 9.799967e-01	ci left: 3.292312e-06	ci right 9.702028e-06	k: 15	n:2550000
PLA2G4E   2550000 perm   3101 sec   (822 perm/sec)   p_kst 5.882353e-06   p_cons 9.748071e-01   p_joint 1.062745e-04

Joint ci ratio: 2.372365e-01	ci left: 9.399773e-05	ci right 1.196556e-04	k: 272	n:2560000
Cons ci ratio: 3.938512e-04	ci left: 9.746163e-01	ci right 9.750006e-01	k: 2495511	n:2560000
KS ci ratio: 9.799967e-01	ci left: 3.279451e-06	ci right 9.664130e-06	k: 15	n:2560000
PLA2G4E   2560000 perm   3123 sec   (820 perm/sec)   p_kst 5.859375e-06   p_cons 9.748090e-01   p_joint 1.062500e-04

Joint ci ratio: 2.368032e-01	ci left: 9.399798e-05	ci right 1.196022e-04	k: 273	n:2570000
Cons ci ratio: 3.930751e-04	ci left: 9.746178e-01	ci right 9.750014e-01	k: 2505262	n:2570000
KS ci ratio: 9.799968e-01	ci left: 3.266691e-06	ci right 9.626526e-06	k: 15	n:2570000
PLA2G4E   2570000 perm   3145 sec   (817 perm/sec)   p_kst 5.836576e-06   p_cons 9.748101e-01   p_joint 1.062257e-04

Joint ci ratio: 2.363722e-01	ci left: 9.399827e-05	ci right 1.195492e-04	k: 274	n:2580000
Cons ci ratio: 3.922510e-04	ci left: 9.746259e-01	ci right 9.750087e-01	k: 2515030	n:2580000
KS ci ratio: 9.799968e-01	ci left: 3.254029e-06	ci right 9.589214e-06	k: 15	n:2580000
PLA2G4E   2580000 perm   3167 sec   (815 perm/sec)   p_kst 5.813953e-06   p_cons 9.748178e-01   p_joint 1.062016e-04

Joint ci ratio: 2.359437e-01	ci left: 9.399860e-05	ci right 1.194965e-04	k: 275	n:2590000
Cons ci ratio: 3.914012e-04	ci left: 9.746378e-01	ci right 9.750198e-01	k: 2524808	n:2590000
KS ci ratio: 9.799968e-01	ci left: 3.241465e-06	ci right 9.552190e-06	k: 15	n:2590000
PLA2G4E   2590000 perm   3190 sec   (812 perm/sec)   p_kst 5.791506e-06   p_cons 9.748293e-01   p_joint 1.061776e-04

Joint ci ratio: 2.346716e-01	ci left: 9.472290e-05	ci right 1.202586e-04	k: 278	n:2600000
Cons ci ratio: 3.906211e-04	ci left: 9.746416e-01	ci right 9.750227e-01	k: 2534565	n:2600000
KS ci ratio: 9.799968e-01	ci left: 3.228998e-06	ci right 9.515451e-06	k: 15	n:2600000
PLA2G4E   2600000 perm   3212 sec   (809 perm/sec)   p_kst 5.769231e-06   p_cons 9.748327e-01   p_joint 1.069231e-04

Joint ci ratio: 2.342522e-01	ci left: 9.472061e-05	ci right 1.202035e-04	k: 279	n:2610000
Cons ci ratio: 3.898609e-04	ci left: 9.746434e-01	ci right 9.750238e-01	k: 2544317	n:2610000
KS ci ratio: 9.799968e-01	ci left: 3.216626e-06	ci right 9.478993e-06	k: 15	n:2610000
PLA2G4E   2610000 perm   3234 sec   (807 perm/sec)   p_kst 5.747126e-06   p_cons 9.748341e-01   p_joint 1.068966e-04

Joint ci ratio: 2.338350e-01	ci left: 9.471839e-05	ci right 1.201487e-04	k: 280	n:2620000
Cons ci ratio: 3.890869e-04	ci left: 9.746474e-01	ci right 9.750271e-01	k: 2554075	n:2620000
KS ci ratio: 9.799968e-01	ci left: 3.204349e-06	ci right 9.442814e-06	k: 15	n:2620000
PLA2G4E   2620000 perm   3257 sec   (804 perm/sec)   p_kst 5.725191e-06   p_cons 9.748378e-01   p_joint 1.068702e-04

Joint ci ratio: 2.338351e-01	ci left: 9.435824e-05	ci right 1.196918e-04	k: 280	n:2630000
Cons ci ratio: 3.884078e-04	ci left: 9.746400e-01	ci right 9.750190e-01	k: 2563803	n:2630000
KS ci ratio: 9.799968e-01	ci left: 3.192165e-06	ci right 9.406910e-06	k: 15	n:2630000
PLA2G4E   2630000 perm   3280 sec   (802 perm/sec)   p_kst 5.703422e-06   p_cons 9.748300e-01   p_joint 1.064639e-04

Joint ci ratio: 2.338351e-01	ci left: 9.400082e-05	ci right 1.192385e-04	k: 280	n:2640000
Cons ci ratio: 3.877023e-04	ci left: 9.746365e-01	ci right 9.750148e-01	k: 2573541	n:2640000
KS ci ratio: 9.799968e-01	ci left: 3.180074e-06	ci right 9.371278e-06	k: 15	n:2640000
PLA2G4E   2640000 perm   3302 sec   (799 perm/sec)   p_kst 5.681818e-06   p_cons 9.748261e-01   p_joint 1.060606e-04

Joint ci ratio: 2.342524e-01	ci left: 9.329086e-05	ci right 1.183891e-04	k: 279	n:2650000
Cons ci ratio: 3.870096e-04	ci left: 9.746318e-01	ci right 9.750094e-01	k: 2583276	n:2650000
KS ci ratio: 9.799969e-01	ci left: 3.168074e-06	ci right 9.335914e-06	k: 15	n:2650000
PLA2G4E   2650000 perm   3325 sec   (797 perm/sec)   p_kst 5.660377e-06   p_cons 9.748211e-01   p_joint 1.052830e-04

Joint ci ratio: 2.334202e-01	ci left: 9.364798e-05	ci right 1.187399e-04	k: 281	n:2660000
Cons ci ratio: 3.862347e-04	ci left: 9.746381e-01	ci right 9.750150e-01	k: 2593040	n:2660000
KS ci ratio: 9.799969e-01	ci left: 3.156164e-06	ci right 9.300817e-06	k: 15	n:2660000
PLA2G4E   2660000 perm   3348 sec   (794 perm/sec)   p_kst 5.639098e-06   p_cons 9.748271e-01   p_joint 1.056391e-04

Joint ci ratio: 2.325968e-01	ci left: 9.400258e-05	ci right 1.190878e-04	k: 283	n:2670000
Cons ci ratio: 3.854409e-04	ci left: 9.746474e-01	ci right 9.750235e-01	k: 2602812	n:2670000
KS ci ratio: 9.799969e-01	ci left: 3.144343e-06	ci right 9.265983e-06	k: 15	n:2670000
PLA2G4E   2670000 perm   3371 sec   (792 perm/sec)   p_kst 5.617978e-06   p_cons 9.748360e-01   p_joint 1.059925e-04

Joint ci ratio: 2.325968e-01	ci left: 9.365182e-05	ci right 1.186435e-04	k: 283	n:2680000
Cons ci ratio: 3.847748e-04	ci left: 9.746409e-01	ci right 9.750163e-01	k: 2612542	n:2680000
KS ci ratio: 9.799969e-01	ci left: 3.132610e-06	ci right 9.231408e-06	k: 15	n:2680000
PLA2G4E   2680000 perm   3394 sec   (790 perm/sec)   p_kst 5.597015e-06   p_cons 9.748291e-01   p_joint 1.055970e-04

Joint ci ratio: 2.321884e-01	ci left: 9.365378e-05	ci right 1.185958e-04	k: 284	n:2690000
Cons ci ratio: 3.840773e-04	ci left: 9.746389e-01	ci right 9.750136e-01	k: 2622284	n:2690000
KS ci ratio: 9.799969e-01	ci left: 3.120965e-06	ci right 9.197091e-06	k: 15	n:2690000
PLA2G4E   2690000 perm   3417 sec   (787 perm/sec)   p_kst 5.576208e-06   p_cons 9.748268e-01   p_joint 1.055762e-04

Joint ci ratio: 2.321885e-01	ci left: 9.330691e-05	ci right 1.181565e-04	k: 284	n:2700000
Cons ci ratio: 3.833893e-04	ci left: 9.746361e-01	ci right 9.750102e-01	k: 2632024	n:2700000
KS ci ratio: 9.799969e-01	ci left: 3.109406e-06	ci right 9.163027e-06	k: 15	n:2700000
PLA2G4E   2700000 perm   3440 sec   (785 perm/sec)   p_kst 5.555556e-06   p_cons 9.748237e-01   p_joint 1.051852e-04

Joint ci ratio: 2.309759e-01	ci left: 9.400540e-05	ci right 1.188917e-04	k: 287	n:2710000
Cons ci ratio: 3.825985e-04	ci left: 9.746471e-01	ci right 9.750205e-01	k: 2641801	n:2710000
KS ci ratio: 9.799969e-01	ci left: 3.097932e-06	ci right 9.129216e-06	k: 15	n:2710000
PLA2G4E   2710000 perm   3463 sec   (783 perm/sec)   p_kst 5.535055e-06   p_cons 9.748343e-01   p_joint 1.059041e-04

Joint ci ratio: 2.301780e-01	ci left: 9.435262e-05	ci right 1.192322e-04	k: 289	n:2720000
Cons ci ratio: 3.818955e-04	ci left: 9.746474e-01	ci right 9.750200e-01	k: 2651549	n:2720000
KS ci ratio: 9.507365e-01	ci left: 3.362277e-06	ci right 9.552555e-06	k: 16	n:2720000
PLA2G4E   2720000 perm   3486 sec   (780 perm/sec)   p_kst 5.882353e-06   p_cons 9.748342e-01   p_joint 1.062500e-04

Joint ci ratio: 2.297822e-01	ci left: 9.435220e-05	ci right 1.191829e-04	k: 290	n:2730000
Cons ci ratio: 3.811793e-04	ci left: 9.746498e-01	ci right 9.750217e-01	k: 2661303	n:2730000
KS ci ratio: 9.239496e-01	ci left: 3.627523e-06	ci right 9.970182e-06	k: 17	n:2730000
PLA2G4E   2730000 perm   3510 sec   (778 perm/sec)   p_kst 6.227106e-06   p_cons 9.748363e-01   p_joint 1.062271e-04

Joint ci ratio: 2.679552e-01	ci left: 6.764773e-05	ci right 8.890713e-05	k: 213	n:2740000
Cons ci ratio: 3.805237e-04	ci left: 9.746449e-01	ci right 9.750162e-01	k: 2671037	n:2740000
KS ci ratio: 9.239497e-01	ci left: 3.614284e-06	ci right 9.933794e-06	k: 17	n:2740000
PLA2G4E   2740000 perm   3533 sec   (776 perm/sec)   p_kst 6.204380e-06   p_cons 9.748310e-01   p_joint 7.773723e-05

Joint ci ratio: 2.667117e-01	ci left: 6.808027e-05	ci right 8.935973e-05	k: 215	n:2750000
Cons ci ratio: 3.798884e-04	ci left: 9.746378e-01	ci right 9.750085e-01	k: 2680765	n:2750000
KS ci ratio: 9.239497e-01	ci left: 3.601141e-06	ci right 9.897671e-06	k: 17	n:2750000
PLA2G4E   2750000 perm   3556 sec   (773 perm/sec)   p_kst 6.181818e-06   p_cons 9.748236e-01   p_joint 7.818182e-05

Joint ci ratio: 2.660964e-01	ci left: 6.817173e-05	ci right 8.942242e-05	k: 216	n:2760000
Cons ci ratio: 3.791414e-04	ci left: 9.746457e-01	ci right 9.750156e-01	k: 2690534	n:2760000
KS ci ratio: 9.239497e-01	ci left: 3.588093e-06	ci right 9.861810e-06	k: 17	n:2760000
PLA2G4E   2760000 perm   3580 sec   (771 perm/sec)   p_kst 6.159420e-06   p_cons 9.748312e-01   p_joint 7.826087e-05

Joint ci ratio: 2.660965e-01	ci left: 6.792562e-05	ci right 8.909959e-05	k: 216	n:2770000
Cons ci ratio: 3.785213e-04	ci left: 9.746376e-01	ci right 9.750069e-01	k: 2700259	n:2770000
KS ci ratio: 9.239497e-01	ci left: 3.575140e-06	ci right 9.826208e-06	k: 17	n:2770000
PLA2G4E   2770000 perm   3604 sec   (769 perm/sec)   p_kst 6.137184e-06   p_cons 9.748227e-01   p_joint 7.797834e-05

Joint ci ratio: 2.660965e-01	ci left: 6.768128e-05	ci right 8.877909e-05	k: 216	n:2780000
Cons ci ratio: 3.777796e-04	ci left: 9.746458e-01	ci right 9.750144e-01	k: 2710029	n:2780000
KS ci ratio: 9.239497e-01	ci left: 3.562280e-06	ci right 9.790862e-06	k: 17	n:2780000
PLA2G4E   2780000 perm   3627 sec   (766 perm/sec)   p_kst 6.115108e-06   p_cons 9.748306e-01   p_joint 7.769784e-05

Joint ci ratio: 2.654855e-01	ci left: 6.777324e-05	ci right 8.884314e-05	k: 217	n:2790000
Cons ci ratio: 3.770835e-04	ci left: 9.746485e-01	ci right 9.750165e-01	k: 2719784	n:2790000
KS ci ratio: 9.239497e-01	ci left: 3.549512e-06	ci right 9.755770e-06	k: 17	n:2790000
PLA2G4E   2790000 perm   3652 sec   (764 perm/sec)   p_kst 6.093190e-06   p_cons 9.748330e-01   p_joint 7.777778e-05

Joint ci ratio: 2.648786e-01	ci left: 6.786460e-05	ci right 8.890667e-05	k: 218	n:2800000
Cons ci ratio: 3.764269e-04	ci left: 9.746466e-01	ci right 9.750139e-01	k: 2729526	n:2800000
KS ci ratio: 8.993065e-01	ci left: 3.809983e-06	ci right 1.015990e-05	k: 18	n:2800000
PLA2G4E   2800000 perm   3676 sec   (762 perm/sec)   p_kst 6.428571e-06   p_cons 9.748307e-01   p_joint 7.785714e-05

Joint ci ratio: 2.636773e-01	ci left: 6.828768e-05	ci right 8.934906e-05	k: 220	n:2810000
Cons ci ratio: 3.758118e-04	ci left: 9.746396e-01	ci right 9.750063e-01	k: 2739254	n:2810000
KS ci ratio: 8.993065e-01	ci left: 3.796424e-06	ci right 1.012374e-05	k: 18	n:2810000
PLA2G4E   2810000 perm   3701 sec   (759 perm/sec)   p_kst 6.405694e-06   p_cons 9.748235e-01   p_joint 7.829181e-05

Joint ci ratio: 2.636774e-01	ci left: 6.804553e-05	ci right 8.903222e-05	k: 220	n:2820000
Cons ci ratio: 3.751483e-04	ci left: 9.746395e-01	ci right 9.750056e-01	k: 2749001	n:2820000
KS ci ratio: 8.993065e-01	ci left: 3.782962e-06	ci right 1.008784e-05	k: 18	n:2820000
PLA2G4E   2820000 perm   3725 sec   (757 perm/sec)   p_kst 6.382979e-06   p_cons 9.748230e-01   p_joint 7.801418e-05

Joint ci ratio: 2.630828e-01	ci left: 6.813511e-05	ci right 8.909425e-05	k: 221	n:2830000
Cons ci ratio: 3.744558e-04	ci left: 9.746437e-01	ci right 9.750091e-01	k: 2758760	n:2830000
KS ci ratio: 8.993065e-01	ci left: 3.769595e-06	ci right 1.005219e-05	k: 18	n:2830000
PLA2G4E   2830000 perm   3750 sec   (755 perm/sec)   p_kst 6.360424e-06   p_cons 9.748269e-01   p_joint 7.809187e-05

Joint ci ratio: 2.624923e-01	ci left: 6.822412e-05	ci right 8.915579e-05	k: 222	n:2840000
Cons ci ratio: 3.737860e-04	ci left: 9.746453e-01	ci right 9.750100e-01	k: 2768512	n:2840000
KS ci ratio: 8.765354e-01	ci left: 4.027906e-06	ci right 1.044746e-05	k: 19	n:2840000
PLA2G4E   2840000 perm   3774 sec   (753 perm/sec)   p_kst 6.690141e-06   p_cons 9.748282e-01   p_joint 7.816901e-05

Joint ci ratio: 2.613230e-01	ci left: 6.864043e-05	ci right 8.959068e-05	k: 224	n:2850000
Cons ci ratio: 3.730770e-04	ci left: 9.746526e-01	ci right 9.750166e-01	k: 2778280	n:2850000
KS ci ratio: 8.765354e-01	ci left: 4.013773e-06	ci right 1.041081e-05	k: 19	n:2850000
PLA2G4E   2850000 perm   3798 sec   (750 perm/sec)   p_kst 6.666667e-06   p_cons 9.748351e-01   p_joint 7.859649e-05

Joint ci ratio: 2.607442e-01	ci left: 6.872720e-05	ci right 8.964991e-05	k: 225	n:2860000
Cons ci ratio: 3.723694e-04	ci left: 9.746602e-01	ci right 9.750235e-01	k: 2788049	n:2860000
KS ci ratio: 8.765354e-01	ci left: 3.999739e-06	ci right 1.037440e-05	k: 19	n:2860000
PLA2G4E   2860000 perm   3822 sec   (748 perm/sec)   p_kst 6.643357e-06   p_cons 9.748423e-01   p_joint 7.867133e-05

Joint ci ratio: 2.607442e-01	ci left: 6.848773e-05	ci right 8.933754e-05	k: 225	n:2870000
Cons ci ratio: 3.717476e-04	ci left: 9.746568e-01	ci right 9.750196e-01	k: 2797787	n:2870000
KS ci ratio: 8.765354e-01	ci left: 3.985803e-06	ci right 1.033826e-05	k: 19	n:2870000
PLA2G4E   2870000 perm   3847 sec   (746 perm/sec)   p_kst 6.620209e-06   p_cons 9.748387e-01   p_joint 7.839721e-05

Joint ci ratio: 2.601692e-01	ci left: 6.857448e-05	ci right 8.939718e-05	k: 226	n:2880000
Cons ci ratio: 3.711105e-04	ci left: 9.746560e-01	ci right 9.750181e-01	k: 2807532	n:2880000
KS ci ratio: 8.765355e-01	ci left: 3.971963e-06	ci right 1.030236e-05	k: 19	n:2880000
PLA2G4E   2880000 perm   3871 sec   (744 perm/sec)   p_kst 6.597222e-06   p_cons 9.748375e-01   p_joint 7.847222e-05

Joint ci ratio: 2.595981e-01	ci left: 6.866068e-05	ci right 8.945636e-05	k: 227	n:2890000
Cons ci ratio: 3.704689e-04	ci left: 9.746562e-01	ci right 9.750176e-01	k: 2817280	n:2890000
KS ci ratio: 8.765355e-01	ci left: 3.958219e-06	ci right 1.026671e-05	k: 19	n:2890000
PLA2G4E   2890000 perm   3896 sec   (742 perm/sec)   p_kst 6.574394e-06   p_cons 9.748374e-01   p_joint 7.854671e-05

Joint ci ratio: 2.595981e-01	ci left: 6.842392e-05	ci right 8.914789e-05	k: 227	n:2900000
Cons ci ratio: 3.698800e-04	ci left: 9.746498e-01	ci right 9.750107e-01	k: 2827009	n:2900000
KS ci ratio: 8.765355e-01	ci left: 3.944570e-06	ci right 1.023131e-05	k: 19	n:2900000
PLA2G4E   2900000 perm   3920 sec   (740 perm/sec)   p_kst 6.551724e-06   p_cons 9.748307e-01   p_joint 7.827586e-05

Joint ci ratio: 2.584669e-01	ci left: 6.883145e-05	ci right 8.957335e-05	k: 229	n:2910000
Cons ci ratio: 3.692576e-04	ci left: 9.746482e-01	ci right 9.750085e-01	k: 2836752	n:2910000
KS ci ratio: 8.765355e-01	ci left: 3.931015e-06	ci right 1.019615e-05	k: 19	n:2910000
PLA2G4E   2910000 perm   3945 sec   (738 perm/sec)   p_kst 6.529210e-06   p_cons 9.748289e-01   p_joint 7.869416e-05

Joint ci ratio: 2.584669e-01	ci left: 6.859573e-05	ci right 8.926659e-05	k: 229	n:2920000
Cons ci ratio: 3.686101e-04	ci left: 9.746505e-01	ci right 9.750102e-01	k: 2846506	n:2920000
KS ci ratio: 8.765355e-01	ci left: 3.917553e-06	ci right 1.016123e-05	k: 19	n:2920000
PLA2G4E   2920000 perm   3970 sec   (735 perm/sec)   p_kst 6.506849e-06   p_cons 9.748308e-01   p_joint 7.842466e-05

Joint ci ratio: 2.630832e-01	ci left: 6.580967e-05	ci right 8.605351e-05	k: 221	n:2930000
Cons ci ratio: 3.679762e-04	ci left: 9.746514e-01	ci right 9.750105e-01	k: 2856256	n:2930000
KS ci ratio: 8.765355e-01	ci left: 3.904182e-06	ci right 1.012655e-05	k: 19	n:2930000
PLA2G4E   2930000 perm   3995 sec   (733 perm/sec)   p_kst 6.484642e-06   p_cons 9.748314e-01   p_joint 7.542662e-05

Joint ci ratio: 2.630832e-01	ci left: 6.558583e-05	ci right 8.576081e-05	k: 221	n:2940000
Cons ci ratio: 3.674244e-04	ci left: 9.746417e-01	ci right 9.750002e-01	k: 2865975	n:2940000
KS ci ratio: 8.765355e-01	ci left: 3.890903e-06	ci right 1.009211e-05	k: 19	n:2940000
PLA2G4E   2940000 perm   4021 sec   (731 perm/sec)   p_kst 6.462585e-06   p_cons 9.748214e-01   p_joint 7.517007e-05

Joint ci ratio: 2.624926e-01	ci left: 6.568016e-05	ci right 8.583136e-05	k: 222	n:2950000
Cons ci ratio: 3.668625e-04	ci left: 9.746338e-01	ci right 9.749917e-01	k: 2875699	n:2950000
KS ci ratio: 8.765355e-01	ci left: 3.877713e-06	ci right 1.005790e-05	k: 19	n:2950000
PLA2G4E   2950000 perm   4046 sec   (729 perm/sec)   p_kst 6.440678e-06   p_cons 9.748132e-01   p_joint 7.525424e-05

Joint ci ratio: 2.619061e-01	ci left: 6.577390e-05	ci right 8.590138e-05	k: 223	n:2960000
Cons ci ratio: 3.661972e-04	ci left: 9.746401e-01	ci right 9.749974e-01	k: 2885465	n:2960000
KS ci ratio: 8.765355e-01	ci left: 3.864613e-06	ci right 1.002392e-05	k: 19	n:2960000
PLA2G4E   2960000 perm   4071 sec   (727 perm/sec)   p_kst 6.418919e-06   p_cons 9.748193e-01   p_joint 7.533784e-05

Joint ci ratio: 2.619061e-01	ci left: 6.555244e-05	ci right 8.561215e-05	k: 223	n:2970000
Cons ci ratio: 3.655606e-04	ci left: 9.746431e-01	ci right 9.749998e-01	k: 2895221	n:2970000
KS ci ratio: 8.765355e-01	ci left: 3.851601e-06	ci right 9.990168e-06	k: 19	n:2970000
PLA2G4E   2970000 perm   4097 sec   (725 perm/sec)   p_kst 6.397306e-06   p_cons 9.748219e-01   p_joint 7.508418e-05

Joint ci ratio: 2.619061e-01	ci left: 6.533246e-05	ci right 8.532486e-05	k: 223	n:2980000
Cons ci ratio: 3.649598e-04	ci left: 9.746416e-01	ci right 9.749977e-01	k: 2904964	n:2980000
KS ci ratio: 8.765356e-01	ci left: 3.838676e-06	ci right 9.956644e-06	k: 19	n:2980000
PLA2G4E   2980000 perm   4122 sec   (723 perm/sec)   p_kst 6.375839e-06   p_cons 9.748201e-01   p_joint 7.483221e-05

Joint ci ratio: 2.642766e-01	ci left: 6.386438e-05	ci right 8.361369e-05	k: 219	n:2990000
Cons ci ratio: 3.643023e-04	ci left: 9.746482e-01	ci right 9.750037e-01	k: 2914731	n:2990000
KS ci ratio: 8.765356e-01	ci left: 3.825837e-06	ci right 9.923345e-06	k: 19	n:2990000
PLA2G4E   2990000 perm   4147 sec   (721 perm/sec)   p_kst 6.354515e-06   p_cons 9.748264e-01   p_joint 7.324415e-05

Joint ci ratio: 2.636780e-01	ci left: 6.396278e-05	ci right 8.369032e-05	k: 220	n:3000000
Cons ci ratio: 3.636360e-04	ci left: 9.746565e-01	ci right 9.750113e-01	k: 2924503	n:3000000
KS ci ratio: 8.765356e-01	ci left: 3.813085e-06	ci right 9.890267e-06	k: 19	n:3000000
PLA2G4E   3000000 perm   4172 sec   (719 perm/sec)   p_kst 6.333333e-06   p_cons 9.748343e-01   p_joint 7.333333e-05

Joint ci ratio: 2.636780e-01	ci left: 6.375027e-05	ci right 8.341228e-05	k: 220	n:3010000
Cons ci ratio: 3.630372e-04	ci left: 9.746560e-01	ci right 9.750102e-01	k: 2934249	n:3010000
KS ci ratio: 8.765356e-01	ci left: 3.800416e-06	ci right 9.857409e-06	k: 19	n:3010000
PLA2G4E   3010000 perm   4198 sec   (717 perm/sec)   p_kst 6.312292e-06   p_cons 9.748336e-01   p_joint 7.308970e-05

Joint ci ratio: 2.636780e-01	ci left: 6.353918e-05	ci right 8.313608e-05	k: 220	n:3020000
Cons ci ratio: 3.624095e-04	ci left: 9.746598e-01	ci right 9.750134e-01	k: 2944008	n:3020000
KS ci ratio: 8.765356e-01	ci left: 3.787832e-06	ci right 9.824769e-06	k: 19	n:3020000
PLA2G4E   3020000 perm   4223 sec   (715 perm/sec)   p_kst 6.291391e-06   p_cons 9.748371e-01   p_joint 7.284768e-05

Joint ci ratio: 2.630835e-01	ci left: 6.363772e-05	ci right 8.321347e-05	k: 221	n:3030000
Cons ci ratio: 3.618265e-04	ci left: 9.746580e-01	ci right 9.750111e-01	k: 2953750	n:3030000
KS ci ratio: 8.765356e-01	ci left: 3.775331e-06	ci right 9.792344e-06	k: 19	n:3030000
PLA2G4E   3030000 perm   4248 sec   (713 perm/sec)   p_kst 6.270627e-06   p_cons 9.748350e-01   p_joint 7.293729e-05

Joint ci ratio: 2.630835e-01	ci left: 6.342839e-05	ci right 8.293975e-05	k: 221	n:3040000
Cons ci ratio: 3.611591e-04	ci left: 9.746681e-01	ci right 9.750205e-01	k: 2963528	n:3040000
KS ci ratio: 8.765356e-01	ci left: 3.762912e-06	ci right 9.760132e-06	k: 19	n:3040000
PLA2G4E   3040000 perm   4274 sec   (711 perm/sec)   p_kst 6.250000e-06   p_cons 9.748447e-01   p_joint 7.269737e-05

Joint ci ratio: 2.607448e-01	ci left: 6.444581e-05	ci right 8.406519e-05	k: 225	n:3050000
Cons ci ratio: 3.605097e-04	ci left: 9.746761e-01	ci right 9.750279e-01	k: 2973300	n:3050000
KS ci ratio: 8.554110e-01	ci left: 4.005421e-06	ci right 1.012732e-05	k: 20	n:3050000
PLA2G4E   3050000 perm   4300 sec   (709 perm/sec)   p_kst 6.557377e-06   p_cons 9.748525e-01   p_joint 7.377049e-05

Joint ci ratio: 2.607448e-01	ci left: 6.423520e-05	ci right 8.379047e-05	k: 225	n:3060000
Cons ci ratio: 3.599047e-04	ci left: 9.746785e-01	ci right 9.750297e-01	k: 2983055	n:3060000
KS ci ratio: 8.554111e-01	ci left: 3.992331e-06	ci right 1.009422e-05	k: 20	n:3060000
PLA2G4E   3060000 perm   4326 sec   (707 perm/sec)   p_kst 6.535948e-06   p_cons 9.748546e-01   p_joint 7.352941e-05

Joint ci ratio: 2.601699e-01	ci left: 6.433044e-05	ci right 8.386448e-05	k: 226	n:3070000
Cons ci ratio: 3.593694e-04	ci left: 9.746718e-01	ci right 9.750224e-01	k: 2992782	n:3070000
KS ci ratio: 8.554111e-01	ci left: 3.979327e-06	ci right 1.006134e-05	k: 20	n:3070000
PLA2G4E   3070000 perm   4352 sec   (705 perm/sec)   p_kst 6.514658e-06   p_cons 9.748476e-01   p_joint 7.361564e-05

Joint ci ratio: 2.601699e-01	ci left: 6.412157e-05	ci right 8.359220e-05	k: 226	n:3080000
Cons ci ratio: 3.588081e-04	ci left: 9.746690e-01	ci right 9.750191e-01	k: 3002521	n:3080000
KS ci ratio: 8.554111e-01	ci left: 3.966407e-06	ci right 1.002868e-05	k: 20	n:3080000
PLA2G4E   3080000 perm   4378 sec   (704 perm/sec)   p_kst 6.493506e-06   p_cons 9.748445e-01   p_joint 7.337662e-05

Joint ci ratio: 2.601699e-01	ci left: 6.391406e-05	ci right 8.332167e-05	k: 226	n:3090000
Cons ci ratio: 3.582517e-04	ci left: 9.746659e-01	ci right 9.750154e-01	k: 3012259	n:3090000
KS ci ratio: 8.554111e-01	ci left: 3.953571e-06	ci right 9.996221e-06	k: 20	n:3090000
PLA2G4E   3090000 perm   4404 sec   (702 perm/sec)   p_kst 6.472492e-06   p_cons 9.748411e-01   p_joint 7.313916e-05

Joint ci ratio: 2.601700e-01	ci left: 6.370788e-05	ci right 8.305290e-05	k: 226	n:3100000
Cons ci ratio: 3.576438e-04	ci left: 9.746702e-01	ci right 9.750192e-01	k: 3022020	n:3100000
KS ci ratio: 8.554111e-01	ci left: 3.940817e-06	ci right 9.963975e-06	k: 20	n:3100000
PLA2G4E   3100000 perm   4430 sec   (700 perm/sec)   p_kst 6.451613e-06   p_cons 9.748452e-01   p_joint 7.290323e-05

Joint ci ratio: 2.590313e-01	ci left: 6.410428e-05	ci right 8.347068e-05	k: 228	n:3110000
Cons ci ratio: 3.570858e-04	ci left: 9.746681e-01	ci right 9.750165e-01	k: 3031761	n:3110000
KS ci ratio: 8.554111e-01	ci left: 3.928146e-06	ci right 9.931937e-06	k: 20	n:3110000
PLA2G4E   3110000 perm   4457 sec   (698 perm/sec)   p_kst 6.430868e-06   p_cons 9.748428e-01   p_joint 7.331190e-05

Joint ci ratio: 2.590313e-01	ci left: 6.389882e-05	ci right 8.320315e-05	k: 228	n:3120000
Cons ci ratio: 3.565676e-04	ci left: 9.746609e-01	ci right 9.750088e-01	k: 3041486	n:3120000
KS ci ratio: 8.554111e-01	ci left: 3.915555e-06	ci right 9.900104e-06	k: 20	n:3120000
PLA2G4E   3120000 perm   4483 sec   (696 perm/sec)   p_kst 6.410256e-06   p_cons 9.748353e-01   p_joint 7.307692e-05

Joint ci ratio: 2.642770e-01	ci left: 6.100781e-05	ci right 7.987380e-05	k: 219	n:3130000
Cons ci ratio: 3.559937e-04	ci left: 9.746617e-01	ci right 9.750090e-01	k: 3051236	n:3130000
KS ci ratio: 8.554111e-01	ci left: 3.903046e-06	ci right 9.868474e-06	k: 20	n:3130000
PLA2G4E   3130000 perm   4509 sec   (694 perm/sec)   p_kst 6.389776e-06   p_cons 9.748358e-01   p_joint 6.996805e-05

Joint ci ratio: 2.642770e-01	ci left: 6.081352e-05	ci right 7.961942e-05	k: 219	n:3140000
Cons ci ratio: 3.554826e-04	ci left: 9.746542e-01	ci right 9.750010e-01	k: 3060960	n:3140000
KS ci ratio: 8.554111e-01	ci left: 3.890616e-06	ci right 9.837046e-06	k: 20	n:3140000
PLA2G4E   3140000 perm   4536 sec   (692 perm/sec)   p_kst 6.369427e-06   p_cons 9.748280e-01   p_joint 6.974522e-05

Joint ci ratio: 2.636784e-01	ci left: 6.091692e-05	ci right 7.970508e-05	k: 220	n:3150000
Cons ci ratio: 3.549759e-04	ci left: 9.746464e-01	ci right 9.749927e-01	k: 3070683	n:3150000
KS ci ratio: 8.357438e-01	ci left: 4.126776e-06	ci right 1.019069e-05	k: 21	n:3150000
PLA2G4E   3150000 perm   4562 sec   (690 perm/sec)   p_kst 6.666667e-06   p_cons 9.748200e-01   p_joint 6.984127e-05

Joint ci ratio: 2.636785e-01	ci left: 6.072414e-05	ci right 7.945285e-05	k: 220	n:3160000
Cons ci ratio: 3.544257e-04	ci left: 9.746450e-01	ci right 9.749908e-01	k: 3080426	n:3160000
KS ci ratio: 8.357438e-01	ci left: 4.113717e-06	ci right 1.015844e-05	k: 21	n:3160000
PLA2G4E   3160000 perm   4589 sec   (689 perm/sec)   p_kst 6.645570e-06   p_cons 9.748184e-01   p_joint 6.962025e-05

Joint ci ratio: 2.636785e-01	ci left: 6.053258e-05	ci right 7.920221e-05	k: 220	n:3170000
Cons ci ratio: 3.539235e-04	ci left: 9.746373e-01	ci right 9.749826e-01	k: 3090149	n:3170000
KS ci ratio: 8.357438e-01	ci left: 4.100740e-06	ci right 1.012640e-05	k: 21	n:3170000
PLA2G4E   3170000 perm   4616 sec   (687 perm/sec)   p_kst 6.624606e-06   p_cons 9.748104e-01   p_joint 6.940063e-05

Joint ci ratio: 2.630839e-01	ci left: 6.063593e-05	ci right 7.928833e-05	k: 221	n:3180000
Cons ci ratio: 3.533396e-04	ci left: 9.746413e-01	ci right 9.749861e-01	k: 3099909	n:3180000
KS ci ratio: 8.357438e-01	ci left: 4.087844e-06	ci right 1.009455e-05	k: 21	n:3180000
PLA2G4E   3180000 perm   4643 sec   (685 perm/sec)   p_kst 6.603774e-06   p_cons 9.748142e-01   p_joint 6.949686e-05

Joint ci ratio: 2.624934e-01	ci left: 6.073868e-05	ci right 7.937386e-05	k: 222	n:3190000
Cons ci ratio: 3.527834e-04	ci left: 9.746419e-01	ci right 9.749861e-01	k: 3109658	n:3190000
KS ci ratio: 8.357438e-01	ci left: 4.075030e-06	ci right 1.006291e-05	k: 21	n:3190000
PLA2G4E   3190000 perm   4670 sec   (683 perm/sec)   p_kst 6.583072e-06   p_cons 9.748144e-01   p_joint 6.959248e-05

Joint ci ratio: 2.613241e-01	ci left: 6.113285e-05	ci right 7.979175e-05	k: 224	n:3200000
Cons ci ratio: 3.521850e-04	ci left: 9.746487e-01	ci right 9.749923e-01	k: 3119427	n:3200000
KS ci ratio: 8.357438e-01	ci left: 4.062295e-06	ci right 1.003146e-05	k: 21	n:3200000
PLA2G4E   3200000 perm   4697 sec   (681 perm/sec)   p_kst 6.562500e-06   p_cons 9.748209e-01   p_joint 7.000000e-05

Joint ci ratio: 2.613241e-01	ci left: 6.094240e-05	ci right 7.954318e-05	k: 224	n:3210000
Cons ci ratio: 3.516164e-04	ci left: 9.746517e-01	ci right 9.749948e-01	k: 3129184	n:3210000
KS ci ratio: 8.357438e-01	ci left: 4.049640e-06	ci right 1.000021e-05	k: 21	n:3210000
PLA2G4E   3210000 perm   4724 sec   (680 perm/sec)   p_kst 6.542056e-06   p_cons 9.748237e-01   p_joint 6.978193e-05

Joint ci ratio: 2.613242e-01	ci left: 6.075314e-05	ci right 7.929615e-05	k: 224	n:3220000
Cons ci ratio: 3.511216e-04	ci left: 9.746447e-01	ci right 9.749873e-01	k: 3138909	n:3220000
KS ci ratio: 8.357438e-01	ci left: 4.037064e-06	ci right 9.969154e-06	k: 21	n:3220000
PLA2G4E   3220000 perm   4751 sec   (678 perm/sec)   p_kst 6.521739e-06   p_cons 9.748165e-01   p_joint 6.956522e-05

Joint ci ratio: 2.607454e-01	ci left: 6.085439e-05	ci right 7.938046e-05	k: 225	n:3230000
Cons ci ratio: 3.505139e-04	ci left: 9.746540e-01	ci right 9.749960e-01	k: 3148686	n:3230000
KS ci ratio: 8.357438e-01	ci left: 4.024565e-06	ci right 9.938290e-06	k: 21	n:3230000
PLA2G4E   3230000 perm   4778 sec   (676 perm/sec)   p_kst 6.501548e-06   p_cons 9.748254e-01   p_joint 6.965944e-05

Joint ci ratio: 2.607454e-01	ci left: 6.066657e-05	ci right 7.913546e-05	k: 225	n:3240000
Cons ci ratio: 3.499555e-04	ci left: 9.746566e-01	ci right 9.749981e-01	k: 3158442	n:3240000
KS ci ratio: 8.357438e-01	ci left: 4.012144e-06	ci right 9.907616e-06	k: 21	n:3240000
PLA2G4E   3240000 perm   4806 sec   (674 perm/sec)   p_kst 6.481481e-06   p_cons 9.748278e-01   p_joint 6.944444e-05

Joint ci ratio: 2.607454e-01	ci left: 6.047990e-05	ci right 7.889197e-05	k: 225	n:3250000
Cons ci ratio: 3.493822e-04	ci left: 9.746617e-01	ci right 9.750026e-01	k: 3168206	n:3250000
KS ci ratio: 8.357439e-01	ci left: 3.999798e-06	ci right 9.877131e-06	k: 21	n:3250000
PLA2G4E   3250000 perm   4833 sec   (673 perm/sec)   p_kst 6.461538e-06   p_cons 9.748326e-01   p_joint 6.923077e-05

Joint ci ratio: 2.595992e-01	ci left: 6.086787e-05	ci right 7.930338e-05	k: 227	n:3260000
Cons ci ratio: 3.487659e-04	ci left: 9.746733e-01	ci right 9.750136e-01	k: 3177991	n:3260000
KS ci ratio: 8.357439e-01	ci left: 3.987529e-06	ci right 9.846833e-06	k: 21	n:3260000
PLA2G4E   3260000 perm   4860 sec   (671 perm/sec)   p_kst 6.441718e-06   p_cons 9.748439e-01   p_joint 6.963190e-05

Joint ci ratio: 2.595993e-01	ci left: 6.068173e-05	ci right 7.906087e-05	k: 227	n:3270000
Cons ci ratio: 3.482028e-04	ci left: 9.746777e-01	ci right 9.750175e-01	k: 3187753	n:3270000
KS ci ratio: 8.357439e-01	ci left: 3.975335e-06	ci right 9.816721e-06	k: 21	n:3270000
PLA2G4E   3270000 perm   4888 sec   (669 perm/sec)   p_kst 6.422018e-06   p_cons 9.748480e-01   p_joint 6.941896e-05

Joint ci ratio: 2.590318e-01	ci left: 6.078179e-05	ci right 7.914448e-05	k: 228	n:3280000
Cons ci ratio: 3.476683e-04	ci left: 9.746784e-01	ci right 9.750177e-01	k: 3197503	n:3280000
KS ci ratio: 8.357439e-01	ci left: 3.963215e-06	ci right 9.786792e-06	k: 21	n:3280000
PLA2G4E   3280000 perm   4915 sec   (667 perm/sec)   p_kst 6.402439e-06   p_cons 9.748485e-01   p_joint 6.951220e-05

Joint ci ratio: 2.590318e-01	ci left: 6.059704e-05	ci right 7.890392e-05	k: 228	n:3290000
Cons ci ratio: 3.470975e-04	ci left: 9.746847e-01	ci right 9.750233e-01	k: 3207271	n:3290000
KS ci ratio: 8.357439e-01	ci left: 3.951169e-06	ci right 9.757045e-06	k: 21	n:3290000
PLA2G4E   3290000 perm   4943 sec   (666 perm/sec)   p_kst 6.382979e-06   p_cons 9.748544e-01   p_joint 6.930091e-05

Joint ci ratio: 2.584681e-01	ci left: 6.069679e-05	ci right 7.898746e-05	k: 229	n:3300000
Cons ci ratio: 3.465296e-04	ci left: 9.746908e-01	ci right 9.750289e-01	k: 3217039	n:3300000
KS ci ratio: 8.357439e-01	ci left: 3.939195e-06	ci right 9.727478e-06	k: 21	n:3300000
PLA2G4E   3300000 perm   4971 sec   (664 perm/sec)   p_kst 6.363636e-06   p_cons 9.748603e-01   p_joint 6.939394e-05

Joint ci ratio: 2.579080e-01	ci left: 6.079598e-05	ci right 7.907044e-05	k: 230	n:3310000
Cons ci ratio: 3.459601e-04	ci left: 9.746976e-01	ci right 9.750351e-01	k: 3226809	n:3310000
KS ci ratio: 8.173735e-01	ci left: 4.165347e-06	ci right 1.006290e-05	k: 22	n:3310000
PLA2G4E   3310000 perm   4999 sec   (662 perm/sec)   p_kst 6.646526e-06   p_cons 9.748668e-01   p_joint 6.948640e-05

Joint ci ratio: 2.573516e-01	ci left: 6.089462e-05	ci right 7.915289e-05	k: 231	n:3320000
Cons ci ratio: 3.454294e-04	ci left: 9.746991e-01	ci right 9.750362e-01	k: 3236562	n:3320000
KS ci ratio: 8.173735e-01	ci left: 4.152801e-06	ci right 1.003259e-05	k: 22	n:3320000
PLA2G4E   3320000 perm   5027 sec   (660 perm/sec)   p_kst 6.626506e-06   p_cons 9.748681e-01   p_joint 6.957831e-05

Joint ci ratio: 2.567987e-01	ci left: 6.099271e-05	ci right 7.923480e-05	k: 232	n:3330000
Cons ci ratio: 3.448970e-04	ci left: 9.747013e-01	ci right 9.750378e-01	k: 3246317	n:3330000
KS ci ratio: 8.173736e-01	ci left: 4.140330e-06	ci right 1.000246e-05	k: 22	n:3330000
PLA2G4E   3330000 perm   5055 sec   (659 perm/sec)   p_kst 6.606607e-06   p_cons 9.748700e-01   p_joint 6.966967e-05

Joint ci ratio: 2.557036e-01	ci left: 6.137044e-05	ci right 7.963475e-05	k: 234	n:3340000
Cons ci ratio: 3.443607e-04	ci left: 9.747043e-01	ci right 9.750403e-01	k: 3256075	n:3340000
KS ci ratio: 8.001637e-01	ci left: 4.365282e-06	ci right 1.033270e-05	k: 23	n:3340000
PLA2G4E   3340000 perm   5083 sec   (657 perm/sec)   p_kst 6.886228e-06   p_cons 9.748728e-01   p_joint 7.005988e-05

Joint ci ratio: 2.551612e-01	ci left: 6.146664e-05	ci right 7.971461e-05	k: 235	n:3350000
Cons ci ratio: 3.438039e-04	ci left: 9.747107e-01	ci right 9.750461e-01	k: 3265844	n:3350000
KS ci ratio: 8.001637e-01	ci left: 4.352252e-06	ci right 1.030186e-05	k: 23	n:3350000
PLA2G4E   3350000 perm   5111 sec   (655 perm/sec)   p_kst 6.865672e-06   p_cons 9.748788e-01   p_joint 7.014925e-05

Joint ci ratio: 2.540868e-01	ci left: 6.184096e-05	ci right 8.011050e-05	k: 237	n:3360000
Cons ci ratio: 3.432623e-04	ci left: 9.747152e-01	ci right 9.750501e-01	k: 3275607	n:3360000
KS ci ratio: 8.001637e-01	ci left: 4.339299e-06	ci right 1.027120e-05	k: 23	n:3360000
PLA2G4E   3360000 perm   5139 sec   (654 perm/sec)   p_kst 6.845238e-06   p_cons 9.748830e-01   p_joint 7.053571e-05

Joint ci ratio: 2.525003e-01	ci left: 6.249116e-05	ci right 8.081938e-05	k: 240	n:3370000
Cons ci ratio: 3.427377e-04	ci left: 9.747175e-01	ci right 9.750520e-01	k: 3285363	n:3370000
KS ci ratio: 7.839970e-01	ci left: 4.562988e-06	ci right 1.059645e-05	k: 24	n:3370000
PLA2G4E   3370000 perm   5168 sec   (652 perm/sec)   p_kst 7.121662e-06   p_cons 9.748852e-01   p_joint 7.121662e-05

Joint ci ratio: 2.557037e-01	ci left: 6.064416e-05	ci right 7.869233e-05	k: 234	n:3380000
Cons ci ratio: 3.422796e-04	ci left: 9.747107e-01	ci right 9.750447e-01	k: 3295088	n:3380000
KS ci ratio: 7.839970e-01	ci left: 4.549488e-06	ci right 1.056510e-05	k: 24	n:3380000
PLA2G4E   3380000 perm   5196 sec   (650 perm/sec)   p_kst 7.100592e-06   p_cons 9.748781e-01   p_joint 6.923077e-05

Joint ci ratio: 2.546224e-01	ci left: 6.101751e-05	ci right 7.908782e-05	k: 236	n:3390000
Cons ci ratio: 3.418131e-04	ci left: 9.747054e-01	ci right 9.750389e-01	k: 3304818	n:3390000
KS ci ratio: 7.839970e-01	ci left: 4.536068e-06	ci right 1.053393e-05	k: 24	n:3390000
PLA2G4E   3390000 perm   5225 sec   (649 perm/sec)   p_kst 7.079646e-06   p_cons 9.748726e-01   p_joint 6.961652e-05

Joint ci ratio: 2.546225e-01	ci left: 6.083805e-05	ci right 7.885521e-05	k: 236	n:3400000
Cons ci ratio: 3.413279e-04	ci left: 9.747031e-01	ci right 9.750361e-01	k: 3314558	n:3400000
KS ci ratio: 7.839970e-01	ci left: 4.522726e-06	ci right 1.050295e-05	k: 24	n:3400000
PLA2G4E   3400000 perm   5253 sec   (647 perm/sec)   p_kst 7.058824e-06   p_cons 9.748700e-01   p_joint 6.941176e-05

Joint ci ratio: 2.540870e-01	ci left: 6.093420e-05	ci right 7.893587e-05	k: 237	n:3410000
Cons ci ratio: 3.408203e-04	ci left: 9.747043e-01	ci right 9.750368e-01	k: 3324310	n:3410000
KS ci ratio: 7.839970e-01	ci left: 4.509463e-06	ci right 1.047215e-05	k: 24	n:3410000
PLA2G4E   3410000 perm   5282 sec   (646 perm/sec)   p_kst 7.038123e-06   p_cons 9.748710e-01   p_joint 6.950147e-05

Joint ci ratio: 2.613247e-01	ci left: 5.720031e-05	ci right 7.465897e-05	k: 224	n:3420000
Cons ci ratio: 3.403333e-04	ci left: 9.747029e-01	ci right 9.750349e-01	k: 3334053	n:3420000
KS ci ratio: 7.839970e-01	ci left: 4.496278e-06	ci right 1.044153e-05	k: 24	n:3420000
PLA2G4E   3420000 perm   5311 sec   (644 perm/sec)   p_kst 7.017544e-06   p_cons 9.748693e-01   p_joint 6.549708e-05

Joint ci ratio: 2.667138e-01	ci left: 5.458326e-05	ci right 7.164417e-05	k: 215	n:3430000
Cons ci ratio: 3.398341e-04	ci left: 9.747035e-01	ci right 9.750351e-01	k: 3343803	n:3430000
KS ci ratio: 7.839970e-01	ci left: 4.483169e-06	ci right 1.041109e-05	k: 24	n:3430000
PLA2G4E   3430000 perm   5339 sec   (642 perm/sec)   p_kst 6.997085e-06   p_cons 9.748697e-01   p_joint 6.268222e-05

Joint ci ratio: 2.660985e-01	ci left: 5.469587e-05	ci right 7.174597e-05	k: 216	n:3440000
Cons ci ratio: 3.393392e-04	ci left: 9.747038e-01	ci right 9.750349e-01	k: 3353552	n:3440000
KS ci ratio: 7.839970e-01	ci left: 4.470137e-06	ci right 1.038082e-05	k: 24	n:3440000
PLA2G4E   3440000 perm   5368 sec   (641 perm/sec)   p_kst 6.976744e-06   p_cons 9.748698e-01   p_joint 6.279070e-05

Joint ci ratio: 2.551615e-01	ci left: 5.968499e-05	ci right 7.740405e-05	k: 235	n:3450000
Cons ci ratio: 3.387623e-04	ci left: 9.747164e-01	ci right 9.750469e-01	k: 3363343	n:3450000
KS ci ratio: 7.544013e-01	ci left: 4.922923e-06	ci right 1.104231e-05	k: 26	n:3450000
PLA2G4E   3450000 perm   5397 sec   (639 perm/sec)   p_kst 7.536232e-06   p_cons 9.748820e-01   p_joint 6.811594e-05

Joint ci ratio: 2.551615e-01	ci left: 5.951249e-05	ci right 7.718034e-05	k: 235	n:3460000
Cons ci ratio: 3.382700e-04	ci left: 9.747169e-01	ci right 9.750470e-01	k: 3373093	n:3460000
KS ci ratio: 7.544013e-01	ci left: 4.908694e-06	ci right 1.101039e-05	k: 26	n:3460000
PLA2G4E   3460000 perm   5426 sec   (638 perm/sec)   p_kst 7.514451e-06   p_cons 9.748824e-01   p_joint 6.791908e-05

Joint ci ratio: 2.551616e-01	ci left: 5.934099e-05	ci right 7.695792e-05	k: 235	n:3470000
Cons ci ratio: 3.377839e-04	ci left: 9.747169e-01	ci right 9.750465e-01	k: 3382841	n:3470000
KS ci ratio: 7.544013e-01	ci left: 4.894548e-06	ci right 1.097866e-05	k: 26	n:3470000
PLA2G4E   3470000 perm   5455 sec   (636 perm/sec)   p_kst 7.492795e-06   p_cons 9.748821e-01   p_joint 6.772334e-05

Joint ci ratio: 2.551616e-01	ci left: 5.917047e-05	ci right 7.673678e-05	k: 235	n:3480000
Cons ci ratio: 3.373057e-04	ci left: 9.747161e-01	ci right 9.750452e-01	k: 3392586	n:3480000
KS ci ratio: 7.544013e-01	ci left: 4.880484e-06	ci right 1.094711e-05	k: 26	n:3480000
PLA2G4E   3480000 perm   5485 sec   (635 perm/sec)   p_kst 7.471264e-06   p_cons 9.748810e-01   p_joint 6.752874e-05

Joint ci ratio: 2.546227e-01	ci left: 5.926915e-05	ci right 7.682170e-05	k: 236	n:3490000
Cons ci ratio: 3.368080e-04	ci left: 9.747184e-01	ci right 9.750470e-01	k: 3402342	n:3490000
KS ci ratio: 7.544013e-01	ci left: 4.866499e-06	ci right 1.091575e-05	k: 26	n:3490000
PLA2G4E   3490000 perm   5514 sec   (633 perm/sec)   p_kst 7.449857e-06   p_cons 9.748831e-01   p_joint 6.762178e-05

Joint ci ratio: 2.540872e-01	ci left: 5.936731e-05	ci right 7.690610e-05	k: 237	n:3500000
Cons ci ratio: 3.363261e-04	ci left: 9.747187e-01	ci right 9.750468e-01	k: 3412091	n:3500000
KS ci ratio: 7.544013e-01	ci left: 4.852595e-06	ci right 1.088456e-05	k: 26	n:3500000
PLA2G4E   3500000 perm   5543 sec   (631 perm/sec)   p_kst 7.428571e-06   p_cons 9.748831e-01   p_joint 6.771429e-05

Joint ci ratio: 2.540872e-01	ci left: 5.919818e-05	ci right 7.668699e-05	k: 237	n:3510000
Cons ci ratio: 3.358210e-04	ci left: 9.747227e-01	ci right 9.750503e-01	k: 3421853	n:3510000
KS ci ratio: 7.544013e-01	ci left: 4.838770e-06	ci right 1.085355e-05	k: 26	n:3510000
PLA2G4E   3510000 perm   5573 sec   (630 perm/sec)   p_kst 7.407407e-06   p_cons 9.748869e-01   p_joint 6.752137e-05

Joint ci ratio: 2.535551e-01	ci left: 5.929602e-05	ci right 7.677126e-05	k: 238	n:3520000
Cons ci ratio: 3.353200e-04	ci left: 9.747264e-01	ci right 9.750535e-01	k: 3431614	n:3520000
KS ci ratio: 7.408073e-01	ci left: 5.054884e-06	ci right 1.116009e-05	k: 27	n:3520000
PLA2G4E   3520000 perm   5603 sec   (628 perm/sec)   p_kst 7.670455e-06   p_cons 9.748903e-01   p_joint 6.761364e-05

Joint ci ratio: 2.525007e-01	ci left: 5.965869e-05	ci right 7.715620e-05	k: 240	n:3530000
Cons ci ratio: 3.348794e-04	ci left: 9.747215e-01	ci right 9.750483e-01	k: 3441345	n:3530000
KS ci ratio: 7.408073e-01	ci left: 5.040564e-06	ci right 1.112847e-05	k: 27	n:3530000
PLA2G4E   3530000 perm   5633 sec   (627 perm/sec)   p_kst 7.648725e-06   p_cons 9.748853e-01   p_joint 6.798867e-05

Joint ci ratio: 2.519785e-01	ci left: 5.975479e-05	ci right 7.723855e-05	k: 241	n:3540000
Cons ci ratio: 3.344000e-04	ci left: 9.747226e-01	ci right 9.750489e-01	k: 3451097	n:3540000
KS ci ratio: 7.408073e-01	ci left: 5.026325e-06	ci right 1.109704e-05	k: 27	n:3540000
PLA2G4E   3540000 perm   5663 sec   (625 perm/sec)   p_kst 7.627119e-06   p_cons 9.748862e-01   p_joint 6.807910e-05

Joint ci ratio: 2.519785e-01	ci left: 5.958647e-05	ci right 7.702098e-05	k: 241	n:3550000
Cons ci ratio: 3.338938e-04	ci left: 9.747280e-01	ci right 9.750538e-01	k: 3460864	n:3550000
KS ci ratio: 7.408073e-01	ci left: 5.012166e-06	ci right 1.106578e-05	k: 27	n:3550000
PLA2G4E   3550000 perm   5693 sec   (624 perm/sec)   p_kst 7.605634e-06   p_cons 9.748913e-01   p_joint 6.788732e-05

Joint ci ratio: 2.519785e-01	ci left: 5.941909e-05	ci right 7.680463e-05	k: 241	n:3560000
Cons ci ratio: 3.334397e-04	ci left: 9.747260e-01	ci right 9.750513e-01	k: 3470605	n:3560000
KS ci ratio: 7.408073e-01	ci left: 4.998087e-06	ci right 1.103470e-05	k: 27	n:3560000
PLA2G4E   3560000 perm   5723 sec   (622 perm/sec)   p_kst 7.584270e-06   p_cons 9.748890e-01   p_joint 6.769663e-05

Joint ci ratio: 2.519786e-01	ci left: 5.925265e-05	ci right 7.658949e-05	k: 241	n:3570000
Cons ci ratio: 3.329550e-04	ci left: 9.747288e-01	ci right 9.750536e-01	k: 3480363	n:3570000
KS ci ratio: 7.408074e-01	ci left: 4.984087e-06	ci right 1.100379e-05	k: 27	n:3570000
PLA2G4E   3570000 perm   5753 sec   (621 perm/sec)   p_kst 7.563025e-06   p_cons 9.748916e-01   p_joint 6.750700e-05

Joint ci ratio: 2.514595e-01	ci left: 5.934885e-05	ci right 7.667246e-05	k: 242	n:3580000
Cons ci ratio: 3.324648e-04	ci left: 9.747327e-01	ci right 9.750571e-01	k: 3490125	n:3580000
KS ci ratio: 7.408074e-01	ci left: 4.970165e-06	ci right 1.097305e-05	k: 27	n:3580000
PLA2G4E   3580000 perm   5783 sec   (619 perm/sec)   p_kst 7.541899e-06   p_cons 9.748953e-01   p_joint 6.759777e-05

Joint ci ratio: 2.509437e-01	ci left: 5.944455e-05	ci right 7.675494e-05	k: 243	n:3590000
Cons ci ratio: 3.320032e-04	ci left: 9.747326e-01	ci right 9.750566e-01	k: 3499873	n:3590000
KS ci ratio: 7.408074e-01	ci left: 4.956320e-06	ci right 1.094248e-05	k: 27	n:3590000
PLA2G4E   3590000 perm   5814 sec   (617 perm/sec)   p_kst 7.520891e-06   p_cons 9.748950e-01   p_joint 6.768802e-05

Joint ci ratio: 2.509437e-01	ci left: 5.927942e-05	ci right 7.654173e-05	k: 243	n:3600000
Cons ci ratio: 3.315887e-04	ci left: 9.747259e-01	ci right 9.750494e-01	k: 3509597	n:3600000
KS ci ratio: 7.408074e-01	ci left: 4.942553e-06	ci right 1.091209e-05	k: 27	n:3600000
PLA2G4E   3600000 perm   5845 sec   (616 perm/sec)   p_kst 7.500000e-06   p_cons 9.748881e-01   p_joint 6.750000e-05

Joint ci ratio: 2.499215e-01	ci left: 5.963447e-05	ci right 7.691842e-05	k: 245	n:3610000
Cons ci ratio: 3.311139e-04	ci left: 9.747284e-01	ci right 9.750515e-01	k: 3519354	n:3610000
KS ci ratio: 7.408074e-01	ci left: 4.928862e-06	ci right 1.088186e-05	k: 27	n:3610000
PLA2G4E   3610000 perm   5874 sec   (615 perm/sec)   p_kst 7.479224e-06   p_cons 9.748903e-01   p_joint 6.786704e-05

Joint ci ratio: 2.494151e-01	ci left: 5.972869e-05	ci right 7.699943e-05	k: 246	n:3620000
Cons ci ratio: 3.306636e-04	ci left: 9.747275e-01	ci right 9.750502e-01	k: 3529099	n:3620000
KS ci ratio: 7.408074e-01	ci left: 4.915246e-06	ci right 1.085180e-05	k: 27	n:3620000
PLA2G4E   3620000 perm   5905 sec   (613 perm/sec)   p_kst 7.458564e-06   p_cons 9.748892e-01   p_joint 6.795580e-05

Joint ci ratio: 2.484114e-01	ci left: 6.008075e-05	ci right 7.737257e-05	k: 248	n:3630000
Cons ci ratio: 3.301946e-04	ci left: 9.747297e-01	ci right 9.750519e-01	k: 3538855	n:3630000
KS ci ratio: 7.408074e-01	ci left: 4.901705e-06	ci right 1.082191e-05	k: 27	n:3630000
PLA2G4E   3630000 perm   5935 sec   (612 perm/sec)   p_kst 7.438017e-06   p_cons 9.748912e-01   p_joint 6.831956e-05

Joint ci ratio: 2.607464e-01	ci left: 5.399989e-05	ci right 7.043930e-05	k: 225	n:3640000
Cons ci ratio: 3.297757e-04	ci left: 9.747247e-01	ci right 9.750465e-01	k: 3548585	n:3640000
KS ci ratio: 7.408074e-01	ci left: 4.888239e-06	ci right 1.079217e-05	k: 27	n:3640000
PLA2G4E   3640000 perm   5966 sec   (610 perm/sec)   p_kst 7.417582e-06   p_cons 9.748860e-01   p_joint 6.181319e-05

Joint ci ratio: 2.601714e-01	ci left: 5.410803e-05	ci right 7.053813e-05	k: 226	n:3650000
Cons ci ratio: 3.293436e-04	ci left: 9.747220e-01	ci right 9.750433e-01	k: 3558323	n:3650000
KS ci ratio: 7.408074e-01	ci left: 4.874847e-06	ci right 1.076261e-05	k: 27	n:3650000
PLA2G4E   3650000 perm   5996 sec   (609 perm/sec)   p_kst 7.397260e-06   p_cons 9.748830e-01   p_joint 6.191781e-05

Joint ci ratio: 2.596002e-01	ci left: 5.421562e-05	ci right 7.063638e-05	k: 227	n:3660000
Cons ci ratio: 3.289224e-04	ci left: 9.747178e-01	ci right 9.750388e-01	k: 3568056	n:3660000
KS ci ratio: 7.408074e-01	ci left: 4.861527e-06	ci right 1.073320e-05	k: 27	n:3660000
PLA2G4E   3660000 perm   6027 sec   (607 perm/sec)   p_kst 7.377049e-06   p_cons 9.748787e-01   p_joint 6.202186e-05

Joint ci ratio: 2.698561e-01	ci left: 4.974299e-05	ci right 6.550521e-05	k: 210	n:3670000
Cons ci ratio: 3.284956e-04	ci left: 9.747148e-01	ci right 9.750354e-01	k: 3577793	n:3670000
KS ci ratio: 7.408074e-01	ci left: 4.848281e-06	ci right 1.070396e-05	k: 27	n:3670000
PLA2G4E   3670000 perm   6057 sec   (606 perm/sec)   p_kst 7.356948e-06   p_cons 9.748755e-01   p_joint 5.722071e-05

Joint ci ratio: 2.737770e-01	ci left: 4.808847e-05	ci right 6.358595e-05	k: 204	n:3680000
Cons ci ratio: 3.280430e-04	ci left: 9.747160e-01	ci right 9.750360e-01	k: 3587545	n:3680000
KS ci ratio: 7.408074e-01	ci left: 4.835106e-06	ci right 1.067487e-05	k: 27	n:3680000
PLA2G4E   3680000 perm   6088 sec   (604 perm/sec)   p_kst 7.336957e-06   p_cons 9.748764e-01   p_joint 5.543478e-05

Joint ci ratio: 2.731117e-01	ci left: 4.821058e-05	ci right 6.370316e-05	k: 205	n:3690000
Cons ci ratio: 3.275797e-04	ci left: 9.747190e-01	ci right 9.750386e-01	k: 3597304	n:3690000
KS ci ratio: 7.408075e-01	ci left: 4.822003e-06	ci right 1.064594e-05	k: 27	n:3690000
PLA2G4E   3690000 perm   6118 sec   (603 perm/sec)   p_kst 7.317073e-06   p_cons 9.748791e-01   p_joint 5.555556e-05

Joint ci ratio: 2.711444e-01	ci left: 4.883578e-05	ci right 6.439698e-05	k: 208	n:3700000
Cons ci ratio: 3.271110e-04	ci left: 9.747230e-01	ci right 9.750422e-01	k: 3607067	n:3700000
KS ci ratio: 7.408075e-01	ci left: 4.808970e-06	ci right 1.061717e-05	k: 27	n:3700000
PLA2G4E   3700000 perm   6149 sec   (602 perm/sec)   p_kst 7.297297e-06   p_cons 9.748830e-01   p_joint 5.621622e-05

Joint ci ratio: 2.704980e-01	ci left: 4.895539e-05	ci right 6.451121e-05	k: 209	n:3710000
Cons ci ratio: 3.266498e-04	ci left: 9.747263e-01	ci right 9.750450e-01	k: 3616827	n:3710000
KS ci ratio: 7.408075e-01	ci left: 4.796008e-06	ci right 1.058855e-05	k: 27	n:3710000
PLA2G4E   3710000 perm   6180 sec   (600 perm/sec)   p_kst 7.277628e-06   p_cons 9.748860e-01   p_joint 5.633423e-05

Joint ci ratio: 2.698562e-01	ci left: 4.907440e-05	ci right 6.462477e-05	k: 210	n:3720000
Cons ci ratio: 3.262227e-04	ci left: 9.747246e-01	ci right 9.750429e-01	k: 3626569	n:3720000
KS ci ratio: 7.408075e-01	ci left: 4.783116e-06	ci right 1.056009e-05	k: 27	n:3720000
PLA2G4E   3720000 perm   6212 sec   (599 perm/sec)   p_kst 7.258065e-06   p_cons 9.748841e-01   p_joint 5.645161e-05

Joint ci ratio: 2.778740e-01	ci left: 4.594651e-05	ci right 6.101405e-05	k: 198	n:3730000
Cons ci ratio: 3.257545e-04	ci left: 9.747295e-01	ci right 9.750473e-01	k: 3636335	n:3730000
KS ci ratio: 7.408075e-01	ci left: 4.770292e-06	ci right 1.053177e-05	k: 27	n:3730000
PLA2G4E   3730000 perm   6243 sec   (597 perm/sec)   p_kst 7.238606e-06   p_cons 9.748887e-01   p_joint 5.308311e-05

Joint ci ratio: 2.778740e-01	ci left: 4.582365e-05	ci right 6.085092e-05	k: 198	n:3740000
Cons ci ratio: 3.252706e-04	ci left: 9.747369e-01	ci right 9.750543e-01	k: 3646111	n:3740000
KS ci ratio: 7.408075e-01	ci left: 4.757537e-06	ci right 1.050361e-05	k: 27	n:3740000
PLA2G4E   3740000 perm   6275 sec   (596 perm/sec)   p_kst 7.219251e-06   p_cons 9.748960e-01   p_joint 5.294118e-05

Joint ci ratio: 2.771784e-01	ci left: 4.594957e-05	ci right 6.097382e-05	k: 199	n:3750000
Cons ci ratio: 3.248471e-04	ci left: 9.747356e-01	ci right 9.750525e-01	k: 3655854	n:3750000
KS ci ratio: 7.408075e-01	ci left: 4.744851e-06	ci right 1.047560e-05	k: 27	n:3750000
PLA2G4E   3750000 perm   6306 sec   (595 perm/sec)   p_kst 7.200000e-06   p_cons 9.748944e-01   p_joint 5.306667e-05

Joint ci ratio: 2.764881e-01	ci left: 4.607486e-05	ci right 6.109603e-05	k: 200	n:3760000
Cons ci ratio: 3.244112e-04	ci left: 9.747363e-01	ci right 9.750528e-01	k: 3665605	n:3760000
KS ci ratio: 7.408075e-01	ci left: 4.732231e-06	ci right 1.044774e-05	k: 27	n:3760000
PLA2G4E   3760000 perm   6337 sec   (593 perm/sec)   p_kst 7.180851e-06   p_cons 9.748949e-01   p_joint 5.319149e-05

Joint ci ratio: 2.758028e-01	ci left: 4.619953e-05	ci right 6.121754e-05	k: 201	n:3770000
Cons ci ratio: 3.239648e-04	ci left: 9.747389e-01	ci right 9.750550e-01	k: 3675363	n:3770000
KS ci ratio: 7.408075e-01	ci left: 4.719679e-06	ci right 1.042003e-05	k: 27	n:3770000
PLA2G4E   3770000 perm   6368 sec   (592 perm/sec)   p_kst 7.161804e-06   p_cons 9.748973e-01   p_joint 5.331565e-05

Joint ci ratio: 2.758028e-01	ci left: 4.607731e-05	ci right 6.105559e-05	k: 201	n:3780000
Cons ci ratio: 3.235534e-04	ci left: 9.747365e-01	ci right 9.750522e-01	k: 3685102	n:3780000
KS ci ratio: 7.408075e-01	ci left: 4.707193e-06	ci right 1.039247e-05	k: 27	n:3780000
PLA2G4E   3780000 perm   6400 sec   (591 perm/sec)   p_kst 7.142857e-06   p_cons 9.748947e-01   p_joint 5.317460e-05

Joint ci ratio: 2.758029e-01	ci left: 4.595574e-05	ci right 6.089450e-05	k: 201	n:3790000
Cons ci ratio: 3.231035e-04	ci left: 9.747402e-01	ci right 9.750554e-01	k: 3694864	n:3790000
KS ci ratio: 7.408075e-01	ci left: 4.694773e-06	ci right 1.036504e-05	k: 27	n:3790000
PLA2G4E   3790000 perm   6432 sec   (589 perm/sec)   p_kst 7.124011e-06   p_cons 9.748982e-01   p_joint 5.303430e-05

Joint ci ratio: 2.758029e-01	ci left: 4.583480e-05	ci right 6.073425e-05	k: 201	n:3800000
Cons ci ratio: 3.226660e-04	ci left: 9.747422e-01	ci right 9.750570e-01	k: 3704620	n:3800000
KS ci ratio: 7.408075e-01	ci left: 4.682418e-06	ci right 1.033777e-05	k: 27	n:3800000
PLA2G4E   3800000 perm   6463 sec   (588 perm/sec)   p_kst 7.105263e-06   p_cons 9.749000e-01   p_joint 5.289474e-05

Joint ci ratio: 2.758029e-01	ci left: 4.571450e-05	ci right 6.057484e-05	k: 201	n:3810000
Cons ci ratio: 3.222664e-04	ci left: 9.747387e-01	ci right 9.750532e-01	k: 3714355	n:3810000
KS ci ratio: 7.408075e-01	ci left: 4.670128e-06	ci right 1.031063e-05	k: 27	n:3810000
PLA2G4E   3810000 perm   6495 sec   (587 perm/sec)   p_kst 7.086614e-06   p_cons 9.748963e-01   p_joint 5.275591e-05

Joint ci ratio: 2.758029e-01	ci left: 4.559483e-05	ci right 6.041627e-05	k: 201	n:3820000
Cons ci ratio: 3.218408e-04	ci left: 9.747395e-01	ci right 9.750535e-01	k: 3724106	n:3820000
KS ci ratio: 7.408076e-01	ci left: 4.657903e-06	ci right 1.028364e-05	k: 27	n:3820000
PLA2G4E   3820000 perm   6527 sec   (585 perm/sec)   p_kst 7.068063e-06   p_cons 9.748969e-01   p_joint 5.261780e-05

Joint ci ratio: 2.751227e-01	ci left: 4.571884e-05	ci right 6.053761e-05	k: 202	n:3830000
Cons ci ratio: 3.214495e-04	ci left: 9.747353e-01	ci right 9.750489e-01	k: 3733838	n:3830000
KS ci ratio: 7.408076e-01	ci left: 4.645741e-06	ci right 1.025679e-05	k: 27	n:3830000
PLA2G4E   3830000 perm   6560 sec   (584 perm/sec)   p_kst 7.049608e-06   p_cons 9.748924e-01   p_joint 5.274151e-05

Joint ci ratio: 2.744476e-01	ci left: 4.584226e-05	ci right 6.065827e-05	k: 203	n:3840000
Cons ci ratio: 3.210476e-04	ci left: 9.747329e-01	ci right 9.750461e-01	k: 3743577	n:3840000
KS ci ratio: 7.408076e-01	ci left: 4.633643e-06	ci right 1.023008e-05	k: 27	n:3840000
PLA2G4E   3840000 perm   6592 sec   (582 perm/sec)   p_kst 7.031250e-06   p_cons 9.748898e-01   p_joint 5.286458e-05

Joint ci ratio: 2.744476e-01	ci left: 4.572319e-05	ci right 6.050072e-05	k: 203	n:3850000
Cons ci ratio: 3.206149e-04	ci left: 9.747354e-01	ci right 9.750483e-01	k: 3753335	n:3850000
KS ci ratio: 7.408076e-01	ci left: 4.621608e-06	ci right 1.020351e-05	k: 27	n:3850000
PLA2G4E   3850000 perm   6624 sec   (581 perm/sec)   p_kst 7.012987e-06   p_cons 9.748922e-01   p_joint 5.272727e-05

Joint ci ratio: 2.744476e-01	ci left: 4.560474e-05	ci right 6.034398e-05	k: 203	n:3860000
Cons ci ratio: 3.202077e-04	ci left: 9.747344e-01	ci right 9.750468e-01	k: 3763079	n:3860000
KS ci ratio: 7.408076e-01	ci left: 4.609634e-06	ci right 1.017708e-05	k: 27	n:3860000
PLA2G4E   3860000 perm   6656 sec   (580 perm/sec)   p_kst 6.994819e-06   p_cons 9.748909e-01   p_joint 5.259067e-05

Joint ci ratio: 2.737774e-01	ci left: 4.572753e-05	ci right 6.046417e-05	k: 204	n:3870000
Cons ci ratio: 3.197564e-04	ci left: 9.747403e-01	ci right 9.750523e-01	k: 3772850	n:3870000
KS ci ratio: 7.408076e-01	ci left: 4.597723e-06	ci right 1.015078e-05	k: 27	n:3870000
PLA2G4E   3870000 perm   6688 sec   (579 perm/sec)   p_kst 6.976744e-06   p_cons 9.748966e-01   p_joint 5.271318e-05

Joint ci ratio: 2.737774e-01	ci left: 4.560968e-05	ci right 6.030833e-05	k: 204	n:3880000
Cons ci ratio: 3.193406e-04	ci left: 9.747410e-01	ci right 9.750526e-01	k: 3782601	n:3880000
KS ci ratio: 7.408076e-01	ci left: 4.585873e-06	ci right 1.012462e-05	k: 27	n:3880000
PLA2G4E   3880000 perm   6720 sec   (577 perm/sec)   p_kst 6.958763e-06   p_cons 9.748972e-01   p_joint 5.257732e-05

Joint ci ratio: 2.737774e-01	ci left: 4.549243e-05	ci right 6.015330e-05	k: 204	n:3890000
Cons ci ratio: 3.189165e-04	ci left: 9.747433e-01	ci right 9.750545e-01	k: 3792358	n:3890000
KS ci ratio: 7.408076e-01	ci left: 4.574085e-06	ci right 1.009859e-05	k: 27	n:3890000
PLA2G4E   3890000 perm   6752 sec   (576 perm/sec)   p_kst 6.940874e-06   p_cons 9.748992e-01   p_joint 5.244216e-05

Joint ci ratio: 2.737774e-01	ci left: 4.537578e-05	ci right 5.999906e-05	k: 204	n:3900000
Cons ci ratio: 3.185040e-04	ci left: 9.747440e-01	ci right 9.750548e-01	k: 3802109	n:3900000
KS ci ratio: 7.408076e-01	ci left: 4.562356e-06	ci right 1.007270e-05	k: 27	n:3900000
PLA2G4E   3900000 perm   6785 sec   (575 perm/sec)   p_kst 6.923077e-06   p_cons 9.748997e-01   p_joint 5.230769e-05

Joint ci ratio: 2.737775e-01	ci left: 4.525973e-05	ci right 5.984561e-05	k: 204	n:3910000
Cons ci ratio: 3.180981e-04	ci left: 9.747440e-01	ci right 9.750543e-01	k: 3811857	n:3910000
KS ci ratio: 7.408076e-01	ci left: 4.550688e-06	ci right 1.004694e-05	k: 27	n:3910000
PLA2G4E   3910000 perm   6817 sec   (574 perm/sec)   p_kst 6.905371e-06   p_cons 9.748995e-01   p_joint 5.217391e-05

Joint ci ratio: 2.737775e-01	ci left: 4.514427e-05	ci right 5.969294e-05	k: 204	n:3920000
Cons ci ratio: 3.177302e-04	ci left: 9.747383e-01	ci right 9.750483e-01	k: 3821583	n:3920000
KS ci ratio: 7.408076e-01	ci left: 4.539079e-06	ci right 1.002131e-05	k: 27	n:3920000
PLA2G4E   3920000 perm   6850 sec   (572 perm/sec)   p_kst 6.887755e-06   p_cons 9.748936e-01   p_joint 5.204082e-05

Joint ci ratio: 2.731121e-01	ci left: 4.526641e-05	ci right 5.981291e-05	k: 205	n:3930000
Cons ci ratio: 3.173354e-04	ci left: 9.747370e-01	ci right 9.750466e-01	k: 3831326	n:3930000
KS ci ratio: 7.408076e-01	ci left: 4.527529e-06	ci right 9.995807e-06	k: 27	n:3930000
PLA2G4E   3930000 perm   6882 sec   (571 perm/sec)   p_kst 6.870229e-06   p_cons 9.748921e-01   p_joint 5.216285e-05

Joint ci ratio: 2.724516e-01	ci left: 4.538797e-05	ci right 5.993222e-05	k: 206	n:3940000
Cons ci ratio: 3.169668e-04	ci left: 9.747318e-01	ci right 9.750411e-01	k: 3841054	n:3940000
KS ci ratio: 7.408076e-01	ci left: 4.516038e-06	ci right 9.970437e-06	k: 27	n:3940000
PLA2G4E   3940000 perm   6915 sec   (570 perm/sec)   p_kst 6.852792e-06   p_cons 9.748868e-01   p_joint 5.228426e-05

Joint ci ratio: 2.724517e-01	ci left: 4.527307e-05	ci right 5.978049e-05	k: 206	n:3950000
Cons ci ratio: 3.165537e-04	ci left: 9.747338e-01	ci right 9.750427e-01	k: 3850810	n:3950000
KS ci ratio: 7.408076e-01	ci left: 4.504605e-06	ci right 9.945195e-06	k: 27	n:3950000
PLA2G4E   3950000 perm   6948 sec   (568 perm/sec)   p_kst 6.835443e-06   p_cons 9.748886e-01   p_joint 5.215190e-05

Joint ci ratio: 2.717959e-01	ci left: 4.539404e-05	ci right 5.989925e-05	k: 207	n:3960000
Cons ci ratio: 3.161193e-04	ci left: 9.747394e-01	ci right 9.750478e-01	k: 3860580	n:3960000
KS ci ratio: 7.279230e-01	ci left: 4.698438e-06	ci right 1.021912e-05	k: 28	n:3960000
PLA2G4E   3960000 perm   6982 sec   (567 perm/sec)   p_kst 7.070707e-06   p_cons 9.748939e-01   p_joint 5.227273e-05

Joint ci ratio: 2.717959e-01	ci left: 4.527969e-05	ci right 5.974837e-05	k: 207	n:3970000
Cons ci ratio: 3.157078e-04	ci left: 9.747416e-01	ci right 9.750496e-01	k: 3870337	n:3970000
KS ci ratio: 7.279230e-01	ci left: 4.686604e-06	ci right 1.019338e-05	k: 28	n:3970000
PLA2G4E   3970000 perm   7015 sec   (566 perm/sec)   p_kst 7.052897e-06   p_cons 9.748960e-01   p_joint 5.214106e-05

Joint ci ratio: 2.717960e-01	ci left: 4.516593e-05	ci right 5.959825e-05	k: 207	n:3980000
Cons ci ratio: 3.153368e-04	ci left: 9.747378e-01	ci right 9.750454e-01	k: 3880070	n:3980000
KS ci ratio: 7.279230e-01	ci left: 4.674828e-06	ci right 1.016777e-05	k: 28	n:3980000
PLA2G4E   3980000 perm   7048 sec   (565 perm/sec)   p_kst 7.035176e-06   p_cons 9.748920e-01   p_joint 5.201005e-05

Joint ci ratio: 2.711449e-01	ci left: 4.528630e-05	ci right 5.971652e-05	k: 208	n:3990000
Cons ci ratio: 3.149606e-04	ci left: 9.747350e-01	ci right 9.750423e-01	k: 3889807	n:3990000
KS ci ratio: 7.279230e-01	ci left: 4.663112e-06	ci right 1.014229e-05	k: 28	n:3990000
PLA2G4E   3990000 perm   7082 sec   (563 perm/sec)   p_kst 7.017544e-06   p_cons 9.748890e-01   p_joint 5.213033e-05

Joint ci ratio: 2.711450e-01	ci left: 4.517308e-05	ci right 5.956723e-05	k: 208	n:4000000
Cons ci ratio: 3.146002e-04	ci left: 9.747299e-01	ci right 9.750369e-01	k: 3899535	n:4000000
KS ci ratio: 7.279230e-01	ci left: 4.651454e-06	ci right 1.011693e-05	k: 28	n:4000000
PLA2G4E   4000000 perm   7115 sec   (562 perm/sec)   p_kst 7.000000e-06   p_cons 9.748838e-01   p_joint 5.200000e-05

Joint ci ratio: 2.711450e-01	ci left: 4.506043e-05	ci right 5.941868e-05	k: 208	n:4010000
Cons ci ratio: 3.142378e-04	ci left: 9.747254e-01	ci right 9.750320e-01	k: 3909265	n:4010000
KS ci ratio: 7.279230e-01	ci left: 4.639854e-06	ci right 1.009170e-05	k: 28	n:4010000
PLA2G4E   4010000 perm   7149 sec   (561 perm/sec)   p_kst 6.982544e-06   p_cons 9.748791e-01   p_joint 5.187032e-05

Joint ci ratio: 2.704986e-01	ci left: 4.518021e-05	ci right 5.953648e-05	k: 209	n:4020000
Cons ci ratio: 3.138544e-04	ci left: 9.747244e-01	ci right 9.750306e-01	k: 3919009	n:4020000
KS ci ratio: 7.279230e-01	ci left: 4.628312e-06	ci right 1.006660e-05	k: 28	n:4020000
PLA2G4E   4020000 perm   7183 sec   (560 perm/sec)   p_kst 6.965174e-06   p_cons 9.748779e-01   p_joint 5.199005e-05

Joint ci ratio: 2.704986e-01	ci left: 4.506810e-05	ci right 5.938875e-05	k: 209	n:4030000
Cons ci ratio: 3.134485e-04	ci left: 9.747271e-01	ci right 9.750330e-01	k: 3928768	n:4030000
KS ci ratio: 7.279230e-01	ci left: 4.616828e-06	ci right 1.004162e-05	k: 28	n:4030000
PLA2G4E   4030000 perm   7217 sec   (558 perm/sec)   p_kst 6.947891e-06   p_cons 9.748804e-01   p_joint 5.186104e-05

Joint ci ratio: 2.704986e-01	ci left: 4.495654e-05	ci right 5.924175e-05	k: 209	n:4040000
Cons ci ratio: 3.130980e-04	ci left: 9.747214e-01	ci right 9.750269e-01	k: 3938493	n:4040000
KS ci ratio: 7.279230e-01	ci left: 4.605400e-06	ci right 1.001677e-05	k: 28	n:4040000
PLA2G4E   4040000 perm   7250 sec   (557 perm/sec)   p_kst 6.930693e-06   p_cons 9.748745e-01   p_joint 5.173267e-05

Joint ci ratio: 2.704987e-01	ci left: 4.484554e-05	ci right 5.909547e-05	k: 209	n:4050000
Cons ci ratio: 3.127092e-04	ci left: 9.747219e-01	ci right 9.750270e-01	k: 3948243	n:4050000
KS ci ratio: 7.279230e-01	ci left: 4.594029e-06	ci right 9.992033e-06	k: 28	n:4050000
PLA2G4E   4050000 perm   7284 sec   (556 perm/sec)   p_kst 6.913580e-06   p_cons 9.748748e-01   p_joint 5.160494e-05

Joint ci ratio: 2.704987e-01	ci left: 4.473508e-05	ci right 5.894992e-05	k: 209	n:4060000
Cons ci ratio: 3.123250e-04	ci left: 9.747219e-01	ci right 9.750267e-01	k: 3957991	n:4060000
KS ci ratio: 7.279230e-01	ci left: 4.582713e-06	ci right 9.967422e-06	k: 28	n:4060000
PLA2G4E   4060000 perm   7317 sec   (555 perm/sec)   p_kst 6.896552e-06   p_cons 9.748746e-01   p_joint 5.147783e-05

Joint ci ratio: 2.704987e-01	ci left: 4.462517e-05	ci right 5.880508e-05	k: 209	n:4070000
Cons ci ratio: 3.119266e-04	ci left: 9.747244e-01	ci right 9.750287e-01	k: 3967749	n:4070000
KS ci ratio: 7.279230e-01	ci left: 4.571454e-06	ci right 9.942932e-06	k: 28	n:4070000
PLA2G4E   4070000 perm   7351 sec   (554 perm/sec)   p_kst 6.879607e-06   p_cons 9.748769e-01   p_joint 5.135135e-05

Joint ci ratio: 2.692197e-01	ci left: 4.497283e-05	ci right 5.918422e-05	k: 211	n:4080000
Cons ci ratio: 3.115687e-04	ci left: 9.747207e-01	ci right 9.750247e-01	k: 3977482	n:4080000
KS ci ratio: 7.156881e-01	ci left: 4.760239e-06	ci right 1.020803e-05	k: 29	n:4080000
PLA2G4E   4080000 perm   7385 sec   (552 perm/sec)   p_kst 7.107843e-06   p_cons 9.748730e-01   p_joint 5.171569e-05

Joint ci ratio: 2.692197e-01	ci left: 4.486287e-05	ci right 5.903952e-05	k: 211	n:4090000
Cons ci ratio: 3.111654e-04	ci left: 9.747244e-01	ci right 9.750280e-01	k: 3987245	n:4090000
KS ci ratio: 7.156881e-01	ci left: 4.748600e-06	ci right 1.018307e-05	k: 29	n:4090000
PLA2G4E   4090000 perm   7419 sec   (551 perm/sec)   p_kst 7.090465e-06   p_cons 9.748765e-01   p_joint 5.158924e-05

Joint ci ratio: 2.692197e-01	ci left: 4.475345e-05	ci right 5.889552e-05	k: 211	n:4100000
Cons ci ratio: 3.108256e-04	ci left: 9.747183e-01	ci right 9.750215e-01	k: 3996968	n:4100000
KS ci ratio: 7.156881e-01	ci left: 4.737018e-06	ci right 1.015824e-05	k: 29	n:4100000
PLA2G4E   4100000 perm   7454 sec   (550 perm/sec)   p_kst 7.073171e-06   p_cons 9.748702e-01   p_joint 5.146341e-05

Joint ci ratio: 2.685870e-01	ci left: 4.487146e-05	ci right 5.901190e-05	k: 212	n:4110000
Cons ci ratio: 3.104791e-04	ci left: 9.747134e-01	ci right 9.750163e-01	k: 4006696	n:4110000
KS ci ratio: 7.156881e-01	ci left: 4.725493e-06	ci right 1.013352e-05	k: 29	n:4110000
PLA2G4E   4110000 perm   7488 sec   (549 perm/sec)   p_kst 7.055961e-06   p_cons 9.748652e-01   p_joint 5.158151e-05

Joint ci ratio: 2.685870e-01	ci left: 4.476255e-05	ci right 5.886866e-05	k: 212	n:4120000
Cons ci ratio: 3.100924e-04	ci left: 9.747151e-01	ci right 9.750177e-01	k: 4016451	n:4120000
KS ci ratio: 7.156881e-01	ci left: 4.714023e-06	ci right 1.010893e-05	k: 29	n:4120000
PLA2G4E   4120000 perm   7522 sec   (548 perm/sec)   p_kst 7.038835e-06   p_cons 9.748667e-01   p_joint 5.145631e-05

Joint ci ratio: 2.685870e-01	ci left: 4.465417e-05	ci right 5.872613e-05	k: 212	n:4130000
Cons ci ratio: 3.097284e-04	ci left: 9.747135e-01	ci right 9.750156e-01	k: 4026192	n:4130000
KS ci ratio: 7.156881e-01	ci left: 4.702609e-06	ci right 1.008445e-05	k: 29	n:4130000
PLA2G4E   4130000 perm   7557 sec   (547 perm/sec)   p_kst 7.021792e-06   p_cons 9.748649e-01   p_joint 5.133172e-05

Joint ci ratio: 2.685870e-01	ci left: 4.454631e-05	ci right 5.858428e-05	k: 212	n:4140000
Cons ci ratio: 3.093872e-04	ci left: 9.747084e-01	ci right 9.750103e-01	k: 4035919	n:4140000
KS ci ratio: 7.156881e-01	ci left: 4.691250e-06	ci right 1.006009e-05	k: 29	n:4140000
PLA2G4E   4140000 perm   7591 sec   (545 perm/sec)   p_kst 7.004831e-06   p_cons 9.748597e-01   p_joint 5.120773e-05

Joint ci ratio: 2.685870e-01	ci left: 4.443897e-05	ci right 5.844311e-05	k: 212	n:4150000
Cons ci ratio: 3.090363e-04	ci left: 9.747051e-01	ci right 9.750066e-01	k: 4045653	n:4150000
KS ci ratio: 7.156881e-01	ci left: 4.679946e-06	ci right 1.003585e-05	k: 29	n:4150000
PLA2G4E   4150000 perm   7626 sec   (544 perm/sec)   p_kst 6.987952e-06   p_cons 9.748561e-01   p_joint 5.108434e-05

Joint ci ratio: 2.679588e-01	ci left: 4.455636e-05	ci right 5.855913e-05	k: 213	n:4160000
Cons ci ratio: 3.086640e-04	ci left: 9.747054e-01	ci right 9.750065e-01	k: 4055402	n:4160000
KS ci ratio: 7.156881e-01	ci left: 4.668696e-06	ci right 1.001172e-05	k: 29	n:4160000
PLA2G4E   4160000 perm   7663 sec   (543 perm/sec)   p_kst 6.971154e-06   p_cons 9.748562e-01   p_joint 5.120192e-05

Joint ci ratio: 2.679588e-01	ci left: 4.444951e-05	ci right 5.841870e-05	k: 213	n:4170000
Cons ci ratio: 3.082976e-04	ci left: 9.747049e-01	ci right 9.750057e-01	k: 4065148	n:4170000
KS ci ratio: 7.156881e-01	ci left: 4.657500e-06	ci right 9.987716e-06	k: 29	n:4170000
PLA2G4E   4170000 perm   7699 sec   (542 perm/sec)   p_kst 6.954436e-06   p_cons 9.748556e-01   p_joint 5.107914e-05

Joint ci ratio: 2.679588e-01	ci left: 4.434317e-05	ci right 5.827895e-05	k: 213	n:4180000
Cons ci ratio: 3.078678e-04	ci left: 9.747148e-01	ci right 9.750152e-01	k: 4074937	n:4180000
KS ci ratio: 7.156882e-01	ci left: 4.646358e-06	ci right 9.963822e-06	k: 29	n:4180000
PLA2G4E   4180000 perm   7735 sec   (540 perm/sec)   p_kst 6.937799e-06   p_cons 9.748653e-01   p_joint 5.095694e-05

Joint ci ratio: 2.673349e-01	ci left: 4.445999e-05	ci right 5.839450e-05	k: 214	n:4190000
Cons ci ratio: 3.075071e-04	ci left: 9.747139e-01	ci right 9.750139e-01	k: 4084681	n:4190000
KS ci ratio: 7.040501e-01	ci left: 4.830763e-06	ci right 1.022119e-05	k: 30	n:4190000
PLA2G4E   4190000 perm   7770 sec   (539 perm/sec)   p_kst 7.159905e-06   p_cons 9.748642e-01   p_joint 5.107399e-05

Joint ci ratio: 2.673349e-01	ci left: 4.435414e-05	ci right 5.825546e-05	k: 214	n:4200000
Cons ci ratio: 3.071239e-04	ci left: 9.747168e-01	ci right 9.750164e-01	k: 4094441	n:4200000
KS ci ratio: 7.040501e-01	ci left: 4.819261e-06	ci right 1.019686e-05	k: 30	n:4200000
PLA2G4E   4200000 perm   7806 sec   (538 perm/sec)   p_kst 7.142857e-06   p_cons 9.748669e-01   p_joint 5.095238e-05

Joint ci ratio: 2.673349e-01	ci left: 4.424878e-05	ci right 5.811709e-05	k: 214	n:4210000
Cons ci ratio: 3.067777e-04	ci left: 9.747139e-01	ci right 9.750132e-01	k: 4104177	n:4210000
KS ci ratio: 7.040501e-01	ci left: 4.807814e-06	ci right 1.017264e-05	k: 30	n:4210000
PLA2G4E   4210000 perm   7841 sec   (537 perm/sec)   p_kst 7.125891e-06   p_cons 9.748639e-01   p_joint 5.083135e-05

Joint ci ratio: 2.667154e-01	ci left: 4.436503e-05	ci right 5.823216e-05	k: 215	n:4220000
Cons ci ratio: 3.064120e-04	ci left: 9.747144e-01	ci right 9.750134e-01	k: 4113927	n:4220000
KS ci ratio: 7.040501e-01	ci left: 4.796421e-06	ci right 1.014853e-05	k: 30	n:4220000
PLA2G4E   4220000 perm   7879 sec   (536 perm/sec)   p_kst 7.109005e-06   p_cons 9.748642e-01   p_joint 5.094787e-05

Joint ci ratio: 2.667154e-01	ci left: 4.426015e-05	ci right 5.809450e-05	k: 215	n:4230000
Cons ci ratio: 3.060225e-04	ci left: 9.747190e-01	ci right 9.750175e-01	k: 4123694	n:4230000
KS ci ratio: 7.040501e-01	ci left: 4.785082e-06	ci right 1.012454e-05	k: 30	n:4230000
PLA2G4E   4230000 perm   7914 sec   (535 perm/sec)   p_kst 7.092199e-06   p_cons 9.748686e-01   p_joint 5.082742e-05

Joint ci ratio: 2.667154e-01	ci left: 4.415576e-05	ci right 5.795748e-05	k: 215	n:4240000
Cons ci ratio: 3.056536e-04	ci left: 9.747204e-01	ci right 9.750186e-01	k: 4133448	n:4240000
KS ci ratio: 7.040501e-01	ci left: 4.773796e-06	ci right 1.010066e-05	k: 30	n:4240000
PLA2G4E   4240000 perm   7949 sec   (533 perm/sec)   p_kst 7.075472e-06   p_cons 9.748698e-01   p_joint 5.070755e-05

Joint ci ratio: 2.685872e-01	ci left: 4.339334e-05	ci right 5.706798e-05	k: 212	n:4250000
Cons ci ratio: 3.052640e-04	ci left: 9.747254e-01	ci right 9.750232e-01	k: 4143217	n:4250000
KS ci ratio: 7.040501e-01	ci left: 4.762563e-06	ci right 1.007689e-05	k: 30	n:4250000
PLA2G4E   4250000 perm   7985 sec   (532 perm/sec)   p_kst 7.058824e-06   p_cons 9.748746e-01   p_joint 4.988235e-05

Joint ci ratio: 2.679589e-01	ci left: 4.351043e-05	ci right 5.718451e-05	k: 213	n:4260000
Cons ci ratio: 3.049081e-04	ci left: 9.747251e-01	ci right 9.750226e-01	k: 4152964	n:4260000
KS ci ratio: 7.040501e-01	ci left: 4.751384e-06	ci right 1.005324e-05	k: 30	n:4260000
PLA2G4E   4260000 perm   8020 sec   (531 perm/sec)   p_kst 7.042254e-06   p_cons 9.748742e-01   p_joint 5.000000e-05

Joint ci ratio: 2.679589e-01	ci left: 4.340854e-05	ci right 5.705059e-05	k: 213	n:4270000
Cons ci ratio: 3.045694e-04	ci left: 9.747223e-01	ci right 9.750194e-01	k: 4162700	n:4270000
KS ci ratio: 7.040501e-01	ci left: 4.740256e-06	ci right 1.002970e-05	k: 30	n:4270000
PLA2G4E   4270000 perm   8055 sec   (530 perm/sec)   p_kst 7.025761e-06   p_cons 9.748712e-01   p_joint 4.988290e-05

Joint ci ratio: 2.667155e-01	ci left: 4.374309e-05	ci right 5.741583e-05	k: 215	n:4280000
Cons ci ratio: 3.042043e-04	ci left: 9.747239e-01	ci right 9.750207e-01	k: 4172455	n:4280000
KS ci ratio: 7.040502e-01	ci left: 4.729181e-06	ci right 1.000626e-05	k: 30	n:4280000
PLA2G4E   4280000 perm   8092 sec   (529 perm/sec)   p_kst 7.009346e-06   p_cons 9.748727e-01   p_joint 5.023364e-05

Joint ci ratio: 2.661002e-01	ci left: 4.385866e-05	ci right 5.753062e-05	k: 216	n:4290000
Cons ci ratio: 3.038433e-04	ci left: 9.747251e-01	ci right 9.750216e-01	k: 4182208	n:4290000
KS ci ratio: 7.040502e-01	ci left: 4.718157e-06	ci right 9.982937e-06	k: 30	n:4290000
PLA2G4E   4290000 perm   8128 sec   (528 perm/sec)   p_kst 6.993007e-06   p_cons 9.748737e-01   p_joint 5.034965e-05

Joint ci ratio: 2.661002e-01	ci left: 4.375666e-05	ci right 5.739683e-05	k: 216	n:4300000
Cons ci ratio: 3.034750e-04	ci left: 9.747277e-01	ci right 9.750238e-01	k: 4191967	n:4300000
KS ci ratio: 7.040502e-01	ci left: 4.707185e-06	ci right 9.959721e-06	k: 30	n:4300000
PLA2G4E   4300000 perm   8164 sec   (527 perm/sec)   p_kst 6.976744e-06   p_cons 9.748760e-01   p_joint 5.023256e-05

Joint ci ratio: 2.661002e-01	ci left: 4.365514e-05	ci right 5.726366e-05	k: 216	n:4310000
Cons ci ratio: 3.031138e-04	ci left: 9.747293e-01	ci right 9.750250e-01	k: 4201722	n:4310000
KS ci ratio: 7.040502e-01	ci left: 4.696263e-06	ci right 9.936613e-06	k: 30	n:4310000
PLA2G4E   4310000 perm   8200 sec   (526 perm/sec)   p_kst 6.960557e-06   p_cons 9.748775e-01   p_joint 5.011601e-05

Joint ci ratio: 2.661002e-01	ci left: 4.355408e-05	ci right 5.713110e-05	k: 216	n:4320000
Cons ci ratio: 3.027538e-04	ci left: 9.747309e-01	ci right 9.750263e-01	k: 4211477	n:4320000
KS ci ratio: 7.040502e-01	ci left: 4.685392e-06	ci right 9.913612e-06	k: 30	n:4320000
PLA2G4E   4320000 perm   8236 sec   (525 perm/sec)   p_kst 6.944444e-06   p_cons 9.748789e-01   p_joint 5.000000e-05

Joint ci ratio: 2.661002e-01	ci left: 4.345350e-05	ci right 5.699916e-05	k: 216	n:4330000
Cons ci ratio: 3.023781e-04	ci left: 9.747353e-01	ci right 9.750303e-01	k: 4221244	n:4330000
KS ci ratio: 7.040502e-01	ci left: 4.674571e-06	ci right 9.890716e-06	k: 30	n:4330000
PLA2G4E   4330000 perm   8272 sec   (523 perm/sec)   p_kst 6.928406e-06   p_cons 9.748831e-01   p_joint 4.988453e-05

Joint ci ratio: 2.654892e-01	ci left: 4.356844e-05	ci right 5.711356e-05	k: 217	n:4340000
Cons ci ratio: 3.020449e-04	ci left: 9.747330e-01	ci right 9.750277e-01	k: 4230982	n:4340000
KS ci ratio: 7.040502e-01	ci left: 4.663801e-06	ci right 9.867927e-06	k: 30	n:4340000
PLA2G4E   4340000 perm   8309 sec   (522 perm/sec)   p_kst 6.912442e-06   p_cons 9.748806e-01   p_joint 5.000000e-05

Joint ci ratio: 2.648824e-01	ci left: 4.368288e-05	ci right 5.722739e-05	k: 218	n:4350000
Cons ci ratio: 3.017001e-04	ci left: 9.747327e-01	ci right 9.750271e-01	k: 4240729	n:4350000
KS ci ratio: 7.040502e-01	ci left: 4.653079e-06	ci right 9.845242e-06	k: 30	n:4350000
PLA2G4E   4350000 perm   8346 sec   (521 perm/sec)   p_kst 6.896552e-06   p_cons 9.748802e-01   p_joint 5.011494e-05

Joint ci ratio: 2.642796e-01	ci left: 4.379684e-05	ci right 5.734067e-05	k: 219	n:4360000
Cons ci ratio: 3.013593e-04	ci left: 9.747320e-01	ci right 9.750260e-01	k: 4250474	n:4360000
KS ci ratio: 7.040502e-01	ci left: 4.642407e-06	ci right 9.822661e-06	k: 30	n:4360000
PLA2G4E   4360000 perm   8382 sec   (520 perm/sec)   p_kst 6.880734e-06   p_cons 9.748794e-01   p_joint 5.022936e-05

Joint ci ratio: 2.630865e-01	ci left: 4.412404e-05	ci right 5.769730e-05	k: 221	n:4370000
Cons ci ratio: 3.009830e-04	ci left: 9.747373e-01	ci right 9.750309e-01	k: 4260245	n:4370000
KS ci ratio: 7.040502e-01	ci left: 4.631784e-06	ci right 9.800184e-06	k: 30	n:4370000
PLA2G4E   4370000 perm   8419 sec   (519 perm/sec)   p_kst 6.864989e-06   p_cons 9.748844e-01   p_joint 5.057208e-05

Joint ci ratio: 2.619093e-01	ci left: 4.444988e-05	ci right 5.805217e-05	k: 223	n:4380000
Cons ci ratio: 3.006334e-04	ci left: 9.747384e-01	ci right 9.750317e-01	k: 4269998	n:4380000
KS ci ratio: 6.929620e-01	ci left: 4.808908e-06	ci right 1.004611e-05	k: 31	n:4380000
PLA2G4E   4380000 perm   8455 sec   (518 perm/sec)   p_kst 7.077626e-06   p_cons 9.748854e-01   p_joint 5.091324e-05

Joint ci ratio: 2.613266e-01	ci left: 4.456148e-05	ci right 5.816263e-05	k: 224	n:4390000
Cons ci ratio: 3.002892e-04	ci left: 9.747389e-01	ci right 9.750318e-01	k: 4279748	n:4390000
KS ci ratio: 6.929620e-01	ci left: 4.797954e-06	ci right 1.002323e-05	k: 31	n:4390000
PLA2G4E   4390000 perm   8492 sec   (517 perm/sec)   p_kst 7.061503e-06   p_cons 9.748856e-01   p_joint 5.102506e-05

Joint ci ratio: 2.607478e-01	ci left: 4.467260e-05	ci right 5.827255e-05	k: 225	n:4400000
Cons ci ratio: 2.999601e-04	ci left: 9.747370e-01	ci right 9.750296e-01	k: 4289488	n:4400000
KS ci ratio: 6.929620e-01	ci left: 4.787049e-06	ci right 1.000045e-05	k: 31	n:4400000
PLA2G4E   4400000 perm   8529 sec   (516 perm/sec)   p_kst 7.045455e-06   p_cons 9.748836e-01   p_joint 5.113636e-05

Joint ci ratio: 2.607478e-01	ci left: 4.457131e-05	ci right 5.814041e-05	k: 225	n:4410000
Cons ci ratio: 2.995904e-04	ci left: 9.747420e-01	ci right 9.750343e-01	k: 4299258	n:4410000
KS ci ratio: 6.929621e-01	ci left: 4.776194e-06	ci right 9.977769e-06	k: 31	n:4410000
PLA2G4E   4410000 perm   8566 sec   (515 perm/sec)   p_kst 7.029478e-06   p_cons 9.748884e-01   p_joint 5.102041e-05

Joint ci ratio: 2.607478e-01	ci left: 4.447046e-05	ci right 5.800888e-05	k: 225	n:4420000
Cons ci ratio: 2.993093e-04	ci left: 9.747326e-01	ci right 9.750247e-01	k: 4308965	n:4420000
KS ci ratio: 6.929621e-01	ci left: 4.765389e-06	ci right 9.955195e-06	k: 31	n:4420000
PLA2G4E   4420000 perm   8603 sec   (514 perm/sec)   p_kst 7.013575e-06   p_cons 9.748790e-01   p_joint 5.090498e-05

Joint ci ratio: 2.601728e-01	ci left: 4.458108e-05	ci right 5.811837e-05	k: 226	n:4430000
Cons ci ratio: 2.989296e-04	ci left: 9.747396e-01	ci right 9.750313e-01	k: 4318744	n:4430000
KS ci ratio: 6.929621e-01	ci left: 4.754631e-06	ci right 9.932723e-06	k: 31	n:4430000
PLA2G4E   4430000 perm   8641 sec   (513 perm/sec)   p_kst 6.997743e-06   p_cons 9.748858e-01   p_joint 5.101580e-05

Joint ci ratio: 2.601729e-01	ci left: 4.448067e-05	ci right 5.798747e-05	k: 226	n:4440000
Cons ci ratio: 2.985761e-04	ci left: 9.747426e-01	ci right 9.750339e-01	k: 4328505	n:4440000
KS ci ratio: 6.929621e-01	ci left: 4.743923e-06	ci right 9.910352e-06	k: 31	n:4440000
PLA2G4E   4440000 perm   8678 sec   (512 perm/sec)   p_kst 6.981982e-06   p_cons 9.748885e-01   p_joint 5.090090e-05

Joint ci ratio: 2.596017e-01	ci left: 4.459079e-05	ci right 5.809649e-05	k: 227	n:4450000
Cons ci ratio: 2.982512e-04	ci left: 9.747409e-01	ci right 9.750319e-01	k: 4338246	n:4450000
KS ci ratio: 6.929621e-01	ci left: 4.733262e-06	ci right 9.888081e-06	k: 31	n:4450000
PLA2G4E   4450000 perm   8715 sec   (511 perm/sec)   p_kst 6.966292e-06   p_cons 9.748867e-01   p_joint 5.101124e-05

Joint ci ratio: 2.596017e-01	ci left: 4.449081e-05	ci right 5.796623e-05	k: 227	n:4460000
Cons ci ratio: 2.979097e-04	ci left: 9.747423e-01	ci right 9.750329e-01	k: 4348000	n:4460000
KS ci ratio: 6.929621e-01	ci left: 4.722650e-06	ci right 9.865911e-06	k: 31	n:4460000
PLA2G4E   4460000 perm   8753 sec   (510 perm/sec)   p_kst 6.950673e-06   p_cons 9.748879e-01   p_joint 5.089686e-05

Joint ci ratio: 2.596017e-01	ci left: 4.439128e-05	ci right 5.783655e-05	k: 227	n:4470000
Cons ci ratio: 2.975367e-04	ci left: 9.747490e-01	ci right 9.750392e-01	k: 4357778	n:4470000
KS ci ratio: 6.929621e-01	ci left: 4.712084e-06	ci right 9.843839e-06	k: 31	n:4470000
PLA2G4E   4470000 perm   8790 sec   (509 perm/sec)   p_kst 6.935123e-06   p_cons 9.748944e-01   p_joint 5.078300e-05

Joint ci ratio: 2.596017e-01	ci left: 4.429219e-05	ci right 5.770745e-05	k: 227	n:4480000
Cons ci ratio: 2.971989e-04	ci left: 9.747500e-01	ci right 9.750400e-01	k: 4367531	n:4480000
KS ci ratio: 6.929621e-01	ci left: 4.701566e-06	ci right 9.821866e-06	k: 31	n:4480000
PLA2G4E   4480000 perm   8827 sec   (508 perm/sec)   p_kst 6.919643e-06   p_cons 9.748953e-01   p_joint 5.066964e-05

Joint ci ratio: 2.596017e-01	ci left: 4.419355e-05	ci right 5.757893e-05	k: 227	n:4490000
Cons ci ratio: 2.968515e-04	ci left: 9.747529e-01	ci right 9.750425e-01	k: 4377292	n:4490000
KS ci ratio: 6.929621e-01	ci left: 4.691095e-06	ci right 9.799991e-06	k: 31	n:4490000
PLA2G4E   4490000 perm   8864 sec   (507 perm/sec)   p_kst 6.904232e-06   p_cons 9.748980e-01   p_joint 5.055679e-05

Joint ci ratio: 2.584705e-01	ci left: 4.451093e-05	ci right 5.792421e-05	k: 229	n:4500000
Cons ci ratio: 2.965295e-04	ci left: 9.747517e-01	ci right 9.750410e-01	k: 4387035	n:4500000
KS ci ratio: 6.823818e-01	ci left: 4.864000e-06	ci right 1.003875e-05	k: 32	n:4500000
PLA2G4E   4500000 perm   8902 sec   (505 perm/sec)   p_kst 7.111111e-06   p_cons 9.748967e-01   p_joint 5.088889e-05

Joint ci ratio: 2.584705e-01	ci left: 4.441224e-05	ci right 5.779577e-05	k: 229	n:4510000
Cons ci ratio: 2.962502e-04	ci left: 9.747437e-01	ci right 9.750327e-01	k: 4396747	n:4510000
KS ci ratio: 6.823818e-01	ci left: 4.853215e-06	ci right 1.001649e-05	k: 32	n:4510000
PLA2G4E   4510000 perm   8940 sec   (504 perm/sec)   p_kst 7.095344e-06   p_cons 9.748885e-01   p_joint 5.077605e-05

Joint ci ratio: 2.579104e-01	ci left: 4.452090e-05	ci right 5.790343e-05	k: 230	n:4520000
Cons ci ratio: 2.958914e-04	ci left: 9.747489e-01	ci right 9.750376e-01	k: 4406519	n:4520000
KS ci ratio: 6.823818e-01	ci left: 4.842478e-06	ci right 9.994333e-06	k: 32	n:4520000
PLA2G4E   4520000 perm   8978 sec   (503 perm/sec)   p_kst 7.079646e-06   p_cons 9.748936e-01   p_joint 5.088496e-05

Joint ci ratio: 2.579105e-01	ci left: 4.442262e-05	ci right 5.777561e-05	k: 230	n:4530000
Cons ci ratio: 2.955445e-04	ci left: 9.747524e-01	ci right 9.750408e-01	k: 4416283	n:4530000
KS ci ratio: 6.823819e-01	ci left: 4.831788e-06	ci right 9.972271e-06	k: 32	n:4530000
PLA2G4E   4530000 perm   9015 sec   (503 perm/sec)   p_kst 7.064018e-06   p_cons 9.748969e-01   p_joint 5.077263e-05

Joint ci ratio: 2.579105e-01	ci left: 4.432477e-05	ci right 5.764835e-05	k: 230	n:4540000
Cons ci ratio: 2.951936e-04	ci left: 9.747568e-01	ci right 9.750448e-01	k: 4426051	n:4540000
KS ci ratio: 6.823819e-01	ci left: 4.821145e-06	ci right 9.950305e-06	k: 32	n:4540000
PLA2G4E   4540000 perm   9053 sec   (502 perm/sec)   p_kst 7.048458e-06   p_cons 9.749011e-01   p_joint 5.066079e-05

Joint ci ratio: 2.579105e-01	ci left: 4.422736e-05	ci right 5.752165e-05	k: 230	n:4550000
Cons ci ratio: 2.948783e-04	ci left: 9.747554e-01	ci right 9.750431e-01	k: 4435793	n:4550000
KS ci ratio: 6.823819e-01	ci left: 4.810549e-06	ci right 9.928437e-06	k: 32	n:4550000
PLA2G4E   4550000 perm   9091 sec   (500 perm/sec)   p_kst 7.032967e-06   p_cons 9.748996e-01   p_joint 5.054945e-05

Joint ci ratio: 2.568011e-01	ci left: 4.454068e-05	ci right 5.786233e-05	k: 232	n:4560000
Cons ci ratio: 2.945561e-04	ci left: 9.747554e-01	ci right 9.750427e-01	k: 4445541	n:4560000
KS ci ratio: 6.823819e-01	ci left: 4.800000e-06	ci right 9.906664e-06	k: 32	n:4560000
PLA2G4E   4560000 perm   9130 sec   (499 perm/sec)   p_kst 7.017544e-06   p_cons 9.748993e-01   p_joint 5.087719e-05

Joint ci ratio: 2.568012e-01	ci left: 4.444321e-05	ci right 5.773572e-05	k: 232	n:4570000
Cons ci ratio: 2.942586e-04	ci left: 9.747513e-01	ci right 9.750384e-01	k: 4455271	n:4570000
KS ci ratio: 6.823819e-01	ci left: 4.789496e-06	ci right 9.884986e-06	k: 32	n:4570000
PLA2G4E   4570000 perm   9168 sec   (498 perm/sec)   p_kst 7.002188e-06   p_cons 9.748952e-01   p_joint 5.076586e-05

Joint ci ratio: 2.568012e-01	ci left: 4.434617e-05	ci right 5.760966e-05	k: 232	n:4580000
Cons ci ratio: 2.939568e-04	ci left: 9.747482e-01	ci right 9.750350e-01	k: 4465005	n:4580000
KS ci ratio: 6.823819e-01	ci left: 4.779039e-06	ci right 9.863403e-06	k: 32	n:4580000
PLA2G4E   4580000 perm   9206 sec   (498 perm/sec)   p_kst 6.986900e-06   p_cons 9.748919e-01   p_joint 5.065502e-05

Joint ci ratio: 2.562519e-01	ci left: 4.445342e-05	ci right 5.771599e-05	k: 233	n:4590000
Cons ci ratio: 2.936546e-04	ci left: 9.747453e-01	ci right 9.750318e-01	k: 4474740	n:4590000
KS ci ratio: 6.823819e-01	ci left: 4.768627e-06	ci right 9.841914e-06	k: 32	n:4590000
PLA2G4E   4590000 perm   9244 sec   (497 perm/sec)   p_kst 6.971678e-06   p_cons 9.748889e-01   p_joint 5.076253e-05

Joint ci ratio: 2.562519e-01	ci left: 4.435678e-05	ci right 5.759052e-05	k: 233	n:4600000
Cons ci ratio: 2.933585e-04	ci left: 9.747416e-01	ci right 9.750278e-01	k: 4484471	n:4600000
KS ci ratio: 6.823819e-01	ci left: 4.758260e-06	ci right 9.820519e-06	k: 32	n:4600000
PLA2G4E   4600000 perm   9282 sec   (496 perm/sec)   p_kst 6.956522e-06   p_cons 9.748850e-01   p_joint 5.065217e-05

Joint ci ratio: 2.562519e-01	ci left: 4.426056e-05	ci right 5.746560e-05	k: 233	n:4610000
Cons ci ratio: 2.930426e-04	ci left: 9.747414e-01	ci right 9.750272e-01	k: 4494218	n:4610000
KS ci ratio: 6.823819e-01	ci left: 4.747939e-06	ci right 9.799216e-06	k: 32	n:4610000
PLA2G4E   4610000 perm   9321 sec   (495 perm/sec)   p_kst 6.941432e-06   p_cons 9.748846e-01   p_joint 5.054230e-05

Joint ci ratio: 2.562519e-01	ci left: 4.416476e-05	ci right 5.734121e-05	k: 233	n:4620000
Cons ci ratio: 2.927238e-04	ci left: 9.747418e-01	ci right 9.750273e-01	k: 4503968	n:4620000
KS ci ratio: 6.823819e-01	ci left: 4.737662e-06	ci right 9.778006e-06	k: 32	n:4620000
PLA2G4E   4620000 perm   9360 sec   (494 perm/sec)   p_kst 6.926407e-06   p_cons 9.748848e-01   p_joint 5.043290e-05

Joint ci ratio: 2.562519e-01	ci left: 4.406937e-05	ci right 5.721737e-05	k: 233	n:4630000
Cons ci ratio: 2.924125e-04	ci left: 9.747411e-01	ci right 9.750264e-01	k: 4513713	n:4630000
KS ci ratio: 6.823819e-01	ci left: 4.727429e-06	ci right 9.756887e-06	k: 32	n:4630000
PLA2G4E   4630000 perm   9398 sec   (493 perm/sec)   p_kst 6.911447e-06   p_cons 9.748840e-01   p_joint 5.032397e-05

Joint ci ratio: 2.562519e-01	ci left: 4.397439e-05	ci right 5.709405e-05	k: 233	n:4640000
Cons ci ratio: 2.920790e-04	ci left: 9.747443e-01	ci right 9.750292e-01	k: 4523476	n:4640000
KS ci ratio: 6.823819e-01	ci left: 4.717241e-06	ci right 9.735859e-06	k: 32	n:4640000
PLA2G4E   4640000 perm   9436 sec   (492 perm/sec)   p_kst 6.896552e-06   p_cons 9.748871e-01   p_joint 5.021552e-05

Joint ci ratio: 2.557061e-01	ci left: 4.408108e-05	ci right 5.720009e-05	k: 234	n:4650000
Cons ci ratio: 2.917735e-04	ci left: 9.747430e-01	ci right 9.750276e-01	k: 4533218	n:4650000
KS ci ratio: 6.823819e-01	ci left: 4.707096e-06	ci right 9.714922e-06	k: 32	n:4650000
PLA2G4E   4650000 perm   9475 sec   (491 perm/sec)   p_kst 6.881720e-06   p_cons 9.748856e-01   p_joint 5.032258e-05

Joint ci ratio: 2.557061e-01	ci left: 4.398649e-05	ci right 5.707734e-05	k: 234	n:4660000
Cons ci ratio: 2.914870e-04	ci left: 9.747386e-01	ci right 9.750230e-01	k: 4542946	n:4660000
KS ci ratio: 6.823819e-01	ci left: 4.696995e-06	ci right 9.694075e-06	k: 32	n:4660000
PLA2G4E   4660000 perm   9514 sec   (490 perm/sec)   p_kst 6.866953e-06   p_cons 9.748811e-01   p_joint 5.021459e-05

Joint ci ratio: 2.557061e-01	ci left: 4.389230e-05	ci right 5.695512e-05	k: 234	n:4670000
Cons ci ratio: 2.911655e-04	ci left: 9.747403e-01	ci right 9.750244e-01	k: 4552702	n:4670000
KS ci ratio: 6.823819e-01	ci left: 4.686937e-06	ci right 9.673317e-06	k: 32	n:4670000
PLA2G4E   4670000 perm   9553 sec   (489 perm/sec)   p_kst 6.852248e-06   p_cons 9.748827e-01   p_joint 5.010707e-05

Joint ci ratio: 2.551638e-01	ci left: 4.399851e-05	ci right 5.706075e-05	k: 235	n:4680000
Cons ci ratio: 2.908668e-04	ci left: 9.747384e-01	ci right 9.750221e-01	k: 4562441	n:4680000
KS ci ratio: 6.722719e-01	ci left: 4.853783e-06	ci right 9.902608e-06	k: 33	n:4680000
PLA2G4E   4680000 perm   9592 sec   (488 perm/sec)   p_kst 7.051282e-06   p_cons 9.748806e-01   p_joint 5.021368e-05

Joint ci ratio: 2.551638e-01	ci left: 4.390469e-05	ci right 5.693908e-05	k: 235	n:4690000
Cons ci ratio: 2.905133e-04	ci left: 9.747458e-01	ci right 9.750293e-01	k: 4572224	n:4690000
KS ci ratio: 6.722719e-01	ci left: 4.843434e-06	ci right 9.881493e-06	k: 33	n:4690000
PLA2G4E   4690000 perm   9631 sec   (487 perm/sec)   p_kst 7.036247e-06   p_cons 9.748878e-01   p_joint 5.010661e-05

Joint ci ratio: 2.551638e-01	ci left: 4.381128e-05	ci right 5.681794e-05	k: 235	n:4700000
Cons ci ratio: 2.902341e-04	ci left: 9.747409e-01	ci right 9.750240e-01	k: 4581949	n:4700000
KS ci ratio: 6.722720e-01	ci left: 4.833129e-06	ci right 9.860469e-06	k: 33	n:4700000
PLA2G4E   4700000 perm   9670 sec   (486 perm/sec)   p_kst 7.021277e-06   p_cons 9.748828e-01   p_joint 5.000000e-05

Joint ci ratio: 2.546249e-01	ci left: 4.391701e-05	ci right 5.692315e-05	k: 236	n:4710000
Cons ci ratio: 2.898905e-04	ci left: 9.747470e-01	ci right 9.750299e-01	k: 4591726	n:4710000
KS ci ratio: 6.722720e-01	ci left: 4.822867e-06	ci right 9.839534e-06	k: 33	n:4710000
PLA2G4E   4710000 perm   9710 sec   (485 perm/sec)   p_kst 7.006369e-06   p_cons 9.748887e-01   p_joint 5.010616e-05

Joint ci ratio: 2.540894e-01	ci left: 4.402233e-05	ci right 5.702789e-05	k: 237	n:4720000
Cons ci ratio: 2.895906e-04	ci left: 9.747459e-01	ci right 9.750285e-01	k: 4601469	n:4720000
KS ci ratio: 6.625984e-01	ci left: 4.988562e-06	ci right 1.006600e-05	k: 34	n:4720000
PLA2G4E   4720000 perm   9750 sec   (484 perm/sec)   p_kst 7.203390e-06   p_cons 9.748875e-01   p_joint 5.021186e-05

Joint ci ratio: 2.535573e-01	ci left: 4.412723e-05	ci right 5.713217e-05	k: 238	n:4730000
Cons ci ratio: 2.892642e-04	ci left: 9.747495e-01	ci right 9.750317e-01	k: 4611234	n:4730000
KS ci ratio: 6.625984e-01	ci left: 4.978015e-06	ci right 1.004472e-05	k: 34	n:4730000
PLA2G4E   4730000 perm   9789 sec   (483 perm/sec)   p_kst 7.188161e-06   p_cons 9.748909e-01   p_joint 5.031712e-05

Joint ci ratio: 2.530285e-01	ci left: 4.423171e-05	ci right 5.723597e-05	k: 239	n:4740000
Cons ci ratio: 2.889289e-04	ci left: 9.747548e-01	ci right 9.750366e-01	k: 4621007	n:4740000
KS ci ratio: 6.625984e-01	ci left: 4.967513e-06	ci right 1.002353e-05	k: 34	n:4740000
PLA2G4E   4740000 perm   9829 sec   (482 perm/sec)   p_kst 7.172996e-06   p_cons 9.748960e-01   p_joint 5.042194e-05

Joint ci ratio: 2.530285e-01	ci left: 4.413859e-05	ci right 5.711547e-05	k: 239	n:4750000
Cons ci ratio: 2.885935e-04	ci left: 9.747602e-01	ci right 9.750418e-01	k: 4630781	n:4750000
KS ci ratio: 6.625984e-01	ci left: 4.957055e-06	ci right 1.000243e-05	k: 34	n:4750000
PLA2G4E   4750000 perm   9869 sec   (481 perm/sec)   p_kst 7.157895e-06   p_cons 9.749013e-01   p_joint 5.031579e-05

Joint ci ratio: 2.551639e-01	ci left: 4.325903e-05	ci right 5.610175e-05	k: 235	n:4760000
Cons ci ratio: 2.882692e-04	ci left: 9.747639e-01	ci right 9.750452e-01	k: 4640547	n:4760000
KS ci ratio: 6.625984e-01	ci left: 4.946641e-06	ci right 9.981413e-06	k: 34	n:4760000
PLA2G4E   4760000 perm   9908 sec   (480 perm/sec)   p_kst 7.142857e-06   p_cons 9.749048e-01   p_joint 4.936975e-05

Joint ci ratio: 2.551639e-01	ci left: 4.316834e-05	ci right 5.598413e-05	k: 235	n:4770000
Cons ci ratio: 2.879521e-04	ci left: 9.747666e-01	ci right 9.750475e-01	k: 4650308	n:4770000
KS ci ratio: 6.625984e-01	ci left: 4.936271e-06	ci right 9.960487e-06	k: 34	n:4770000
PLA2G4E   4770000 perm   9948 sec   (479 perm/sec)   p_kst 7.127883e-06   p_cons 9.749073e-01   p_joint 4.926625e-05

Joint ci ratio: 2.546250e-01	ci left: 4.327387e-05	ci right 5.608955e-05	k: 236	n:4780000
Cons ci ratio: 2.876877e-04	ci left: 9.747604e-01	ci right 9.750411e-01	k: 4660027	n:4780000
KS ci ratio: 6.625984e-01	ci left: 4.925944e-06	ci right 9.939650e-06	k: 34	n:4780000
PLA2G4E   4780000 perm   9988 sec   (479 perm/sec)   p_kst 7.112971e-06   p_cons 9.749010e-01   p_joint 4.937238e-05

Joint ci ratio: 2.546250e-01	ci left: 4.318353e-05	ci right 5.597246e-05	k: 236	n:4790000
Cons ci ratio: 2.874302e-04	ci left: 9.747532e-01	ci right 9.750337e-01	k: 4669741	n:4790000
KS ci ratio: 6.625984e-01	ci left: 4.915660e-06	ci right 9.918899e-06	k: 34	n:4790000
PLA2G4E   4790000 perm   10028 sec   (478 perm/sec)   p_kst 7.098121e-06   p_cons 9.748937e-01   p_joint 4.926931e-05

Joint ci ratio: 2.546250e-01	ci left: 4.309357e-05	ci right 5.585585e-05	k: 236	n:4800000
Cons ci ratio: 2.871281e-04	ci left: 9.747538e-01	ci right 9.750339e-01	k: 4679492	n:4800000
KS ci ratio: 6.625985e-01	ci left: 4.905419e-06	ci right 9.898234e-06	k: 34	n:4800000
PLA2G4E   4800000 perm   10069 sec   (477 perm/sec)   p_kst 7.083333e-06   p_cons 9.748942e-01   p_joint 4.916667e-05

Joint ci ratio: 2.540895e-01	ci left: 4.319862e-05	ci right 5.596085e-05	k: 237	n:4810000
Cons ci ratio: 2.868635e-04	ci left: 9.747481e-01	ci right 9.750280e-01	k: 4689213	n:4810000
KS ci ratio: 6.625985e-01	ci left: 4.895221e-06	ci right 9.877656e-06	k: 34	n:4810000
PLA2G4E   4810000 perm   10109 sec   (476 perm/sec)   p_kst 7.068607e-06   p_cons 9.748884e-01   p_joint 4.927235e-05

Joint ci ratio: 2.535574e-01	ci left: 4.330327e-05	ci right 5.606539e-05	k: 238	n:4820000
Cons ci ratio: 2.865668e-04	ci left: 9.747481e-01	ci right 9.750277e-01	k: 4698961	n:4820000
KS ci ratio: 6.625985e-01	ci left: 4.885065e-06	ci right 9.857163e-06	k: 34	n:4820000
PLA2G4E   4820000 perm   10150 sec   (475 perm/sec)   p_kst 7.053942e-06   p_cons 9.748882e-01   p_joint 4.937759e-05

Joint ci ratio: 2.530286e-01	ci left: 4.340751e-05	ci right 5.616946e-05	k: 239	n:4830000
Cons ci ratio: 2.862566e-04	ci left: 9.747506e-01	ci right 9.750298e-01	k: 4708721	n:4830000
KS ci ratio: 6.533308e-01	ci left: 5.047372e-06	ci right 1.007794e-05	k: 35	n:4830000
PLA2G4E   4830000 perm   10191 sec   (474 perm/sec)   p_kst 7.246377e-06   p_cons 9.748905e-01   p_joint 4.948240e-05

Joint ci ratio: 2.530286e-01	ci left: 4.331783e-05	ci right 5.605341e-05	k: 239	n:4840000
Cons ci ratio: 2.859811e-04	ci left: 9.747472e-01	ci right 9.750262e-01	k: 4718453	n:4840000
KS ci ratio: 6.533308e-01	ci left: 5.036944e-06	ci right 1.005712e-05	k: 35	n:4840000
PLA2G4E   4840000 perm   10231 sec   (473 perm/sec)   p_kst 7.231405e-06   p_cons 9.748870e-01   p_joint 4.938017e-05

Joint ci ratio: 2.530286e-01	ci left: 4.322851e-05	ci right 5.593784e-05	k: 239	n:4850000
Cons ci ratio: 2.856968e-04	ci left: 9.747455e-01	ci right 9.750242e-01	k: 4728193	n:4850000
KS ci ratio: 6.533308e-01	ci left: 5.026558e-06	ci right 1.003638e-05	k: 35	n:4850000
PLA2G4E   4850000 perm   10272 sec   (472 perm/sec)   p_kst 7.216495e-06   p_cons 9.748852e-01   p_joint 4.927835e-05

Joint ci ratio: 2.530286e-01	ci left: 4.313956e-05	ci right 5.582274e-05	k: 239	n:4860000
Cons ci ratio: 2.854121e-04	ci left: 9.747440e-01	ci right 9.750225e-01	k: 4737934	n:4860000
KS ci ratio: 6.533308e-01	ci left: 5.016215e-06	ci right 1.001573e-05	k: 35	n:4860000
PLA2G4E   4860000 perm   10313 sec   (471 perm/sec)   p_kst 7.201646e-06   p_cons 9.748835e-01   p_joint 4.917695e-05

Joint ci ratio: 2.530287e-01	ci left: 4.305098e-05	ci right 5.570811e-05	k: 239	n:4870000
Cons ci ratio: 2.851367e-04	ci left: 9.747411e-01	ci right 9.750193e-01	k: 4747668	n:4870000
KS ci ratio: 6.533309e-01	ci left: 5.005915e-06	ci right 9.995166e-06	k: 35	n:4870000
PLA2G4E   4870000 perm   10353 sec   (470 perm/sec)   p_kst 7.186858e-06   p_cons 9.748805e-01   p_joint 4.907598e-05

Joint ci ratio: 2.530287e-01	ci left: 4.296276e-05	ci right 5.559396e-05	k: 239	n:4880000
Cons ci ratio: 2.848405e-04	ci left: 9.747419e-01	ci right 9.750198e-01	k: 4757420	n:4880000
KS ci ratio: 6.533309e-01	ci left: 4.995657e-06	ci right 9.974684e-06	k: 35	n:4880000
PLA2G4E   4880000 perm   10393 sec   (470 perm/sec)   p_kst 7.172131e-06   p_cons 9.748811e-01   p_joint 4.897541e-05

Joint ci ratio: 2.530287e-01	ci left: 4.287490e-05	ci right 5.548027e-05	k: 239	n:4890000
Cons ci ratio: 2.845311e-04	ci left: 9.747452e-01	ci right 9.750228e-01	k: 4767184	n:4890000
KS ci ratio: 6.533309e-01	ci left: 4.985441e-06	ci right 9.954286e-06	k: 35	n:4890000
PLA2G4E   4890000 perm   10434 sec   (469 perm/sec)   p_kst 7.157464e-06   p_cons 9.748843e-01   p_joint 4.887526e-05

Joint ci ratio: 2.530287e-01	ci left: 4.278740e-05	ci right 5.536704e-05	k: 239	n:4900000
Cons ci ratio: 2.842298e-04	ci left: 9.747472e-01	ci right 9.750245e-01	k: 4776942	n:4900000
KS ci ratio: 6.533309e-01	ci left: 4.975267e-06	ci right 9.933971e-06	k: 35	n:4900000
PLA2G4E   4900000 perm   10475 sec   (468 perm/sec)   p_kst 7.142857e-06   p_cons 9.748861e-01   p_joint 4.877551e-05

Joint ci ratio: 2.525032e-01	ci left: 4.289103e-05	ci right 5.547082e-05	k: 240	n:4910000
Cons ci ratio: 2.839495e-04	ci left: 9.747457e-01	ci right 9.750227e-01	k: 4786683	n:4910000
KS ci ratio: 6.533309e-01	ci left: 4.965134e-06	ci right 9.913739e-06	k: 35	n:4910000
PLA2G4E   4910000 perm   10516 sec   (467 perm/sec)   p_kst 7.128310e-06   p_cons 9.748845e-01   p_joint 4.887984e-05

Joint ci ratio: 2.514619e-01	ci left: 4.318468e-05	ci right 5.579019e-05	k: 242	n:4920000
Cons ci ratio: 2.836770e-04	ci left: 9.747431e-01	ci right 9.750198e-01	k: 4796418	n:4920000
KS ci ratio: 6.533309e-01	ci left: 4.955042e-06	ci right 9.893589e-06	k: 35	n:4920000
PLA2G4E   4920000 perm   10557 sec   (466 perm/sec)   p_kst 7.113821e-06   p_cons 9.748817e-01   p_joint 4.918699e-05

Joint ci ratio: 2.499238e-01	ci left: 4.366738e-05	ci right 5.632370e-05	k: 245	n:4930000
Cons ci ratio: 2.833890e-04	ci left: 9.747432e-01	ci right 9.750197e-01	k: 4806167	n:4930000
KS ci ratio: 6.359055e-01	ci left: 5.284268e-06	ci right 1.034474e-05	k: 37	n:4930000
PLA2G4E   4930000 perm   10597 sec   (465 perm/sec)   p_kst 7.505071e-06   p_cons 9.748817e-01   p_joint 4.969574e-05

Joint ci ratio: 2.489140e-01	ci left: 4.395854e-05	ci right 5.663979e-05	k: 247	n:4940000
Cons ci ratio: 2.831123e-04	ci left: 9.747416e-01	ci right 9.750178e-01	k: 4815907	n:4940000
KS ci ratio: 6.359055e-01	ci left: 5.273571e-06	ci right 1.032380e-05	k: 37	n:4940000
PLA2G4E   4940000 perm   10639 sec   (464 perm/sec)   p_kst 7.489879e-06   p_cons 9.748800e-01   p_joint 5.000000e-05

Joint ci ratio: 2.489140e-01	ci left: 4.386974e-05	ci right 5.652537e-05	k: 247	n:4950000
Cons ci ratio: 2.828283e-04	ci left: 9.747414e-01	ci right 9.750173e-01	k: 4825654	n:4950000
KS ci ratio: 6.359055e-01	ci left: 5.262917e-06	ci right 1.030294e-05	k: 37	n:4950000
PLA2G4E   4950000 perm   10680 sec   (463 perm/sec)   p_kst 7.474747e-06   p_cons 9.748796e-01   p_joint 4.989899e-05

Joint ci ratio: 2.489140e-01	ci left: 4.378129e-05	ci right 5.641141e-05	k: 247	n:4960000
Cons ci ratio: 2.825661e-04	ci left: 9.747375e-01	ci right 9.750132e-01	k: 4835383	n:4960000
KS ci ratio: 6.359055e-01	ci left: 5.252307e-06	ci right 1.028217e-05	k: 37	n:4960000
PLA2G4E   4960000 perm   10721 sec   (463 perm/sec)   p_kst 7.459677e-06   p_cons 9.748756e-01   p_joint 4.979839e-05

Joint ci ratio: 2.484137e-01	ci left: 4.388187e-05	ci right 5.651162e-05	k: 248	n:4970000
Cons ci ratio: 2.823022e-04	ci left: 9.747341e-01	ci right 9.750095e-01	k: 4845114	n:4970000
KS ci ratio: 6.276998e-01	ci left: 5.410682e-06	ci right 1.049455e-05	k: 38	n:4970000
PLA2G4E   4970000 perm   10763 sec   (462 perm/sec)   p_kst 7.645875e-06   p_cons 9.748720e-01   p_joint 4.989940e-05

Joint ci ratio: 2.484137e-01	ci left: 4.379375e-05	ci right 5.639815e-05	k: 248	n:4980000
Cons ci ratio: 2.820253e-04	ci left: 9.747330e-01	ci right 9.750082e-01	k: 4854857	n:4980000
KS ci ratio: 6.276998e-01	ci left: 5.399817e-06	ci right 1.047347e-05	k: 38	n:4980000
PLA2G4E   4980000 perm   10803 sec   (461 perm/sec)   p_kst 7.630522e-06   p_cons 9.748709e-01   p_joint 4.979920e-05

Joint ci ratio: 2.484137e-01	ci left: 4.370599e-05	ci right 5.628513e-05	k: 248	n:4990000
Cons ci ratio: 2.817134e-04	ci left: 9.747383e-01	ci right 9.750131e-01	k: 4864631	n:4990000
KS ci ratio: 6.276998e-01	ci left: 5.388996e-06	ci right 1.045248e-05	k: 38	n:4990000
PLA2G4E   4990000 perm   10845 sec   (460 perm/sec)   p_kst 7.615230e-06   p_cons 9.748760e-01   p_joint 4.969940e-05

Joint ci ratio: 2.479163e-01	ci left: 4.380614e-05	ci right 5.638497e-05	k: 249	n:5000000
Cons ci ratio: 2.814071e-04	ci left: 9.747427e-01	ci right 9.750172e-01	k: 4874401	n:5000000
KS ci ratio: 6.276999e-01	ci left: 5.378218e-06	ci right 1.043158e-05	k: 38	n:5000000
PLA2G4E   5000000 perm   10886 sec   (459 perm/sec)   p_kst 7.600000e-06   p_cons 9.748802e-01   p_joint 4.980000e-05

Outputting figure to mutsig2_images.part000000000132/PLA2G4E.8_2596_5000000_7.6e-06_0.97488_4.98e-05.png
                gene_name: PLA2G4E
               theta_stop: 0.63 
                    nperm: 5000000 
                     p_ks: 7.60e-06 
        ci_ks_bounds_left: 5.38e-06 
       ci_ks_bounds_right: 1.04e-05 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 4.98e-05 
     ci_joint_bounds_left: 4.38e-05 
    ci_joint_bounds_right: 5.64e-05 

Current progress: 30 percent done.
PLEKHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
Cons ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
KS ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
PLEKHA6   10000 perm   2 sec   (4976 perm/sec)   p_kst 1.585000e-01   p_cons 8.378000e-01   p_joint 2.723000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA6.8_3227_10000_0.1585_0.8378_0.2723.png
                gene_name: PLEKHA6
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 32 percent done.
PLEKHG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
PLEKHG2   10000 perm   2 sec   (4476 perm/sec)   p_kst 3.030000e-01   p_cons 4.675000e-01   p_joint 4.466000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHG2.8_4233_10000_0.303_0.4675_0.4466.png
                gene_name: PLEKHG2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 34 percent done.
PKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
Cons ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
PKN2   10000 perm   2 sec   (4878 perm/sec)   p_kst 8.660000e-02   p_cons 3.769000e-01   p_joint 1.065000e-01

Joint ci ratio: 7.143713e-02	ci left: 1.261559e-01	ci right 1.355517e-01	k: 2616	n:20000
Cons ci ratio: 3.527493e-02	ci left: 3.749598e-01	ci right 3.884746e-01	k: 7634	n:20000
KS ci ratio: 9.047721e-02	ci left: 8.190496e-02	ci right 8.971595e-02	k: 1715	n:20000
PKN2   20000 perm   5 sec   (4414 perm/sec)   p_kst 8.575000e-02   p_cons 3.817000e-01   p_joint 1.308000e-01

Outputting figure to mutsig2_images.part000000000132/PKN2.7_3043_20000_0.08575_0.3817_0.1308.png
                gene_name: PKN2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 36 percent done.
PLEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
Cons ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
KS ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
PLEK   10000 perm   2 sec   (5600 perm/sec)   p_kst 5.250000e-02   p_cons 6.435000e-01   p_joint 1.263000e-01

Joint ci ratio: 6.847146e-02	ci left: 1.359578e-01	ci right 1.456469e-01	k: 2815	n:20000
Cons ci ratio: 2.081734e-02	ci left: 6.326502e-01	ci right 6.460093e-01	k: 12787	n:20000
KS ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
PLEK   20000 perm   4 sec   (4979 perm/sec)   p_kst 5.490000e-02   p_cons 6.393500e-01   p_joint 1.407500e-01

Joint ci ratio: 6.242586e-02	ci left: 1.125285e-01	ci right 1.198127e-01	k: 3484	n:30000
Cons ci ratio: 1.696500e-02	ci left: 6.347725e-01	ci right 6.456670e-01	k: 19207	n:30000
KS ci ratio: 9.417389e-02	ci left: 5.202303e-02	ci right 5.719698e-02	k: 1637	n:30000
PLEK   30000 perm   6 sec   (4726 perm/sec)   p_kst 5.456667e-02   p_cons 6.402333e-01   p_joint 1.161333e-01

Outputting figure to mutsig2_images.part000000000132/PLEK.7_1089_30000_0.054567_0.64023_0.11613.png
                gene_name: PLEK
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
PLAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
Cons ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
PLAT   10000 perm   2 sec   (5358 perm/sec)   p_kst 1.890000e-01   p_cons 4.256000e-01   p_joint 6.211000e-01

Outputting figure to mutsig2_images.part000000000132/PLAT.6_1741_10000_0.189_0.4256_0.6211.png
                gene_name: PLAT
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
PLCB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.085693e-02	ci left: 1.825490e-01	ci right 1.980318e-01	k: 1902	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
PLCB2   10000 perm   2 sec   (4714 perm/sec)   p_kst 3.705000e-01   p_cons 1.030000e-01   p_joint 1.902000e-01

Joint ci ratio: 4.710513e-02	ci left: 2.511034e-01	ci right 2.632673e-01	k: 5143	n:20000
Cons ci ratio: 8.175332e-02	ci left: 9.886943e-02	ci right 1.073463e-01	k: 2061	n:20000
KS ci ratio: 3.426525e-02	ci left: 3.887141e-01	ci right 4.023163e-01	k: 7910	n:20000
PLCB2   20000 perm   5 sec   (4243 perm/sec)   p_kst 3.955000e-01   p_cons 1.030500e-01   p_joint 2.571500e-01

Outputting figure to mutsig2_images.part000000000132/PLCB2.6_3686_20000_0.3955_0.10305_0.25715.png
                gene_name: PLCB2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 41 percent done.
PLCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
Cons ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
PLCH2   10000 perm   2 sec   (4756 perm/sec)   p_kst 1.334000e-01   p_cons 4.710000e-02   p_joint 1.391000e-01

Joint ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
Cons ci ratio: 1.206928e-01	ci left: 4.706865e-02	ci right 5.316299e-02	k: 1001	n:20000
KS ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
PLCH2   20000 perm   5 sec   (4311 perm/sec)   p_kst 1.308500e-01   p_cons 5.005000e-02   p_joint 1.164500e-01

Joint ci ratio: 6.645270e-02	ci left: 1.004690e-01	ci right 1.074079e-01	k: 3117	n:30000
Cons ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
KS ci ratio: 5.907972e-02	ci left: 1.241732e-01	ci right 1.317657e-01	k: 3838	n:30000
PLCH2   30000 perm   7 sec   (4137 perm/sec)   p_kst 1.279333e-01   p_cons 5.176667e-02   p_joint 1.039000e-01

Outputting figure to mutsig2_images.part000000000132/PLCH2.6_4339_30000_0.12793_0.051767_0.1039.png
                gene_name: PLCH2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 43 percent done.
PLEKHG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
Cons ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
KS ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
PLEKHG1   10000 perm   2 sec   (5058 perm/sec)   p_kst 7.728000e-01   p_cons 5.028000e-01   p_joint 7.587000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHG1.6_4218_10000_0.7728_0.5028_0.7587.png
                gene_name: PLEKHG1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 45 percent done.
PLA2G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
Cons ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
KS ci ratio: 5.618554e-02	ci left: 3.181047e-01	ci right 3.365960e-01	k: 3273	n:10000
PLA2G3   10000 perm   2 sec   (6014 perm/sec)   p_kst 3.273000e-01   p_cons 3.958000e-01   p_joint 3.198000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G3.5_1558_10000_0.3273_0.3958_0.3198.png
                gene_name: PLA2G3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 46 percent done.
PLAC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
Cons ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
KS ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
PLAC1L   10000 perm   2 sec   (6171 perm/sec)   p_kst 3.490000e-02   p_cons 7.336000e-01   p_joint 8.650000e-02

Joint ci ratio: 7.051004e-02	ci left: 1.291103e-01	ci right 1.385964e-01	k: 2676	n:20000
Cons ci ratio: 1.683792e-02	ci left: 7.242422e-01	ci right 7.365908e-01	k: 14609	n:20000
KS ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
PLAC1L   20000 perm   4 sec   (5457 perm/sec)   p_kst 3.435000e-02   p_cons 7.304500e-01   p_joint 1.338000e-01

Joint ci ratio: 6.504149e-02	ci left: 1.044763e-01	ci right 1.115331e-01	k: 3239	n:30000
Cons ci ratio: 1.382441e-02	ci left: 7.231942e-01	ci right 7.332949e-01	k: 21848	n:30000
KS ci ratio: 1.210642e-01	ci left: 3.171894e-02	ci right 3.583866e-02	k: 1012	n:30000
PLAC1L   30000 perm   6 sec   (5203 perm/sec)   p_kst 3.373333e-02   p_cons 7.282667e-01   p_joint 1.079667e-01

Joint ci ratio: 5.255534e-02	ci left: 1.188818e-01	ci right 1.253231e-01	k: 4883	n:40000
Cons ci ratio: 1.191764e-02	ci left: 7.256956e-01	ci right 7.344210e-01	k: 29203	n:40000
KS ci ratio: 1.041553e-01	ci left: 3.241597e-02	ci right 3.600207e-02	k: 1367	n:40000
PLAC1L   40000 perm   8 sec   (5043 perm/sec)   p_kst 3.417500e-02   p_cons 7.300750e-01   p_joint 1.220750e-01

Joint ci ratio: 5.432292e-02	ci left: 9.175200e-02	ci right 9.689521e-02	k: 4715	n:50000
Cons ci ratio: 1.071723e-02	ci left: 7.240161e-01	ci right 7.318374e-01	k: 36397	n:50000
KS ci ratio: 9.293474e-02	ci left: 3.276093e-02	ci right 3.597343e-02	k: 1717	n:50000
PLAC1L   50000 perm   10 sec   (4915 perm/sec)   p_kst 3.434000e-02   p_cons 7.279400e-01   p_joint 9.430000e-02

Outputting figure to mutsig2_images.part000000000132/PLAC1L.5_493_50000_0.03434_0.72794_0.0943.png
                gene_name: PLAC1L
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.097 

Current progress: 48 percent done.
PLAGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
Cons ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
KS ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
PLAGL2   10000 perm   2 sec   (5738 perm/sec)   p_kst 2.132000e-01   p_cons 3.115000e-01   p_joint 2.758000e-01

Outputting figure to mutsig2_images.part000000000132/PLAGL2.5_1499_10000_0.2132_0.3115_0.2758.png
                gene_name: PLAGL2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 50 percent done.
PLCG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.461386e-02	ci left: 1.395251e-01	ci right 1.534815e-01	k: 1464	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
PLCG1   10000 perm   2 sec   (4885 perm/sec)   p_kst 1.904000e-01   p_cons 1.078000e-01   p_joint 1.464000e-01

Joint ci ratio: 6.974495e-02	ci left: 1.316222e-01	ci right 1.411837e-01	k: 2727	n:20000
Cons ci ratio: 7.856213e-02	ci left: 1.063343e-01	ci right 1.150793e-01	k: 2213	n:20000
KS ci ratio: 5.743630e-02	ci left: 1.834462e-01	ci right 1.943444e-01	k: 3777	n:20000
PLCG1   20000 perm   5 sec   (4436 perm/sec)   p_kst 1.888500e-01   p_cons 1.106500e-01   p_joint 1.363500e-01

Outputting figure to mutsig2_images.part000000000132/PLCG1.5_4004_20000_0.18885_0.11065_0.13635.png
                gene_name: PLCG1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 52 percent done.
PLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
Cons ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
KS ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
PLD2   10000 perm   2 sec   (5223 perm/sec)   p_kst 5.125000e-01   p_cons 6.364000e-01   p_joint 6.403000e-01

Outputting figure to mutsig2_images.part000000000132/PLD2.5_2898_10000_0.5125_0.6364_0.6403.png
                gene_name: PLD2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 54 percent done.
PKN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
PKN3   10000 perm   2 sec   (5337 perm/sec)   p_kst 3.037000e-01   p_cons 1.387000e-01   p_joint 3.072000e-01

Outputting figure to mutsig2_images.part000000000132/PKN3.4_2758_10000_0.3037_0.1387_0.3072.png
                gene_name: PKN3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
PKNOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
Cons ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
KS ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
PKNOX2   10000 perm   2 sec   (5785 perm/sec)   p_kst 2.980000e-02   p_cons 5.417000e-01   p_joint 1.408000e-01

Joint ci ratio: 1.014602e-01	ci left: 6.591574e-02	ci right 7.301005e-02	k: 1388	n:20000
Cons ci ratio: 2.529951e-02	ci left: 5.385680e-01	ci right 5.524187e-01	k: 10910	n:20000
KS ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
PKNOX2   20000 perm   4 sec   (5210 perm/sec)   p_kst 2.910000e-02   p_cons 5.455000e-01   p_joint 6.940000e-02

Joint ci ratio: 9.051919e-02	ci left: 5.616410e-02	ci right 6.152173e-02	k: 1764	n:30000
Cons ci ratio: 2.068798e-02	ci left: 5.391107e-01	ci right 5.504140e-01	k: 16343	n:30000
KS ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
PKNOX2   30000 perm   6 sec   (4978 perm/sec)   p_kst 2.826667e-02   p_cons 5.447667e-01   p_joint 5.880000e-02

Joint ci ratio: 7.871851e-02	ci left: 5.607251e-02	ci right 6.069187e-02	k: 2334	n:40000
Cons ci ratio: 1.788373e-02	ci left: 5.407799e-01	ci right 5.505635e-01	k: 21827	n:40000
KS ci ratio: 1.142265e-01	ci left: 2.696406e-02	ci right 3.025485e-02	k: 1143	n:40000
PKNOX2   40000 perm   8 sec   (4813 perm/sec)   p_kst 2.857500e-02   p_cons 5.456750e-01   p_joint 5.835000e-02

Joint ci ratio: 7.927642e-02	ci left: 4.476883e-02	ci right 4.848404e-02	k: 2330	n:50000
Cons ci ratio: 1.603115e-02	ci left: 5.402024e-01	ci right 5.489525e-01	k: 27229	n:50000
KS ci ratio: 1.036315e-01	ci left: 2.637647e-02	ci right 2.927870e-02	k: 1390	n:50000
PKNOX2   50000 perm   11 sec   (4693 perm/sec)   p_kst 2.780000e-02   p_cons 5.445800e-01   p_joint 4.660000e-02

Joint ci ratio: 7.130874e-02	ci left: 4.623757e-02	ci right 4.967299e-02	k: 2876	n:60000
Cons ci ratio: 1.456710e-02	ci left: 5.428730e-01	ci right 5.508558e-01	k: 32812	n:60000
KS ci ratio: 9.481287e-02	ci left: 2.638512e-02	ci right 2.902749e-02	k: 1661	n:60000
PKNOX2   60000 perm   13 sec   (4594 perm/sec)   p_kst 2.768333e-02   p_cons 5.468667e-01   p_joint 4.793333e-02

Outputting figure to mutsig2_images.part000000000132/PKNOX2.4_1459_60000_0.027683_0.54687_0.047933.png
                gene_name: PKNOX2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 57 percent done.
PKP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
Cons ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
PKP1   10000 perm   2 sec   (5617 perm/sec)   p_kst 2.682000e-01   p_cons 9.055000e-01   p_joint 5.499000e-01

Outputting figure to mutsig2_images.part000000000132/PKP1.4_2300_10000_0.2682_0.9055_0.5499.png
                gene_name: PKP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 59 percent done.
PLA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
Cons ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
KS ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
PLA1A   10000 perm   2 sec   (5542 perm/sec)   p_kst 8.210000e-01   p_cons 2.081000e-01   p_joint 5.758000e-01

Outputting figure to mutsig2_images.part000000000132/PLA1A.4_1415_10000_0.821_0.2081_0.5758.png
                gene_name: PLA1A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 61 percent done.
PLA2G4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
PLA2G4C   10000 perm   2 sec   (5567 perm/sec)   p_kst 8.863000e-01   p_cons 6.380000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G4C.4_1759_10000_0.8863_0.638_1.png
                gene_name: PLA2G4C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PLA2G4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
Cons ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
KS ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
PLA2G4D   10000 perm   2 sec   (5302 perm/sec)   p_kst 3.180000e-01   p_cons 5.903000e-01   p_joint 6.261000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4D.4_2537_10000_0.318_0.5903_0.6261.png
                gene_name: PLA2G4D
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 64 percent done.
PLA2G7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
Cons ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
KS ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
PLA2G7   10000 perm   2 sec   (5630 perm/sec)   p_kst 4.595000e-01   p_cons 2.081000e-01   p_joint 2.967000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G7.4_1370_10000_0.4595_0.2081_0.2967.png
                gene_name: PLA2G7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 66 percent done.
PLAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
Cons ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
KS ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
PLAG1   10000 perm   2 sec   (6112 perm/sec)   p_kst 7.573000e-01   p_cons 5.722000e-01   p_joint 7.585000e-01

Outputting figure to mutsig2_images.part000000000132/PLAG1.4_1511_10000_0.7573_0.5722_0.7585.png
                gene_name: PLAG1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 68 percent done.
PLCB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
PLCB3   10000 perm   2 sec   (4963 perm/sec)   p_kst 3.035000e-01   p_cons 1.499000e-01   p_joint 2.813000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB3.4_3829_10000_0.3035_0.1499_0.2813.png
                gene_name: PLCB3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 70 percent done.
PLCXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
Cons ci ratio: 1.125544e-02	ci left: 9.185285e-01	ci right 9.290230e-01	k: 9239	n:10000
KS ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
PLCXD3   10000 perm   2 sec   (6420 perm/sec)   p_kst 2.903000e-01   p_cons 9.239000e-01   p_joint 3.604000e-01

Outputting figure to mutsig2_images.part000000000132/PLCXD3.4_978_10000_0.2903_0.9239_0.3604.png
                gene_name: PLCXD3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
PLEKHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
Cons ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
KS ci ratio: 3.660682e-02	ci left: 5.242643e-01	ci right 5.439159e-01	k: 5341	n:10000
PLEKHA9   10000 perm   2 sec   (5848 perm/sec)   p_kst 5.341000e-01   p_cons 3.915000e-01   p_joint 5.494000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA9.4_1180_10000_0.5341_0.3915_0.5494.png
                gene_name: PLEKHA9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 73 percent done.
PLA2G12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
KS ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
PLA2G12B   10000 perm   2 sec   (6613 perm/sec)   p_kst 8.010000e-02   p_cons 7.549000e-01   p_joint 1.820000e-01

Joint ci ratio: 5.231376e-02	ci left: 2.134331e-01	ci right 2.249487e-01	k: 4383	n:20000
Cons ci ratio: 1.541418e-02	ci left: 7.578503e-01	ci right 7.696729e-01	k: 15276	n:20000
KS ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
PLA2G12B   20000 perm   3 sec   (5859 perm/sec)   p_kst 7.985000e-02   p_cons 7.638000e-01   p_joint 2.191500e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G12B.3_604_20000_0.07985_0.7638_0.21915.png
                gene_name: PLA2G12B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 75 percent done.
PLA2G2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
Cons ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
KS ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
PLA2G2A   10000 perm   2 sec   (6323 perm/sec)   p_kst 3.724000e-01   p_cons 6.500000e-03   p_joint 1.560000e-02

Joint ci ratio: 1.572061e-01	ci left: 2.777552e-02	ci right 3.256237e-02	k: 602	n:20000
Cons ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
KS ci ratio: 3.636032e-02	ci left: 3.608129e-01	ci right 3.742257e-01	k: 7350	n:20000
PLA2G2A   20000 perm   3 sec   (5799 perm/sec)   p_kst 3.675000e-01   p_cons 6.450000e-03   p_joint 3.010000e-02

Joint ci ratio: 1.367304e-01	ci left: 2.484066e-02	ci right 2.851844e-02	k: 799	n:30000
Cons ci ratio: 2.790792e-01	ci left: 5.622041e-03	ci right 7.475468e-03	k: 195	n:30000
KS ci ratio: 2.962323e-02	ci left: 3.630708e-01	ci right 3.740214e-01	k: 11056	n:30000
PLA2G2A   30000 perm   5 sec   (5518 perm/sec)   p_kst 3.685333e-01   p_cons 6.500000e-03   p_joint 2.663333e-02

Joint ci ratio: 1.714496e-01	ci left: 1.179319e-02	ci right 1.402836e-02	k: 515	n:40000
Cons ci ratio: 2.342847e-01	ci left: 6.135779e-03	ci right 7.787018e-03	k: 277	n:40000
KS ci ratio: 2.556056e-02	ci left: 3.655150e-01	ci right 3.750038e-01	k: 14810	n:40000
PLA2G2A   40000 perm   7 sec   (5341 perm/sec)   p_kst 3.702500e-01   p_cons 6.925000e-03   p_joint 1.287500e-02

Joint ci ratio: 1.417716e-01	ci left: 1.399139e-02	ci right 1.614545e-02	k: 752	n:50000
Cons ci ratio: 2.097031e-01	ci left: 6.212122e-03	ci right 7.685996e-03	k: 346	n:50000
KS ci ratio: 2.275726e-02	ci left: 3.681600e-01	ci right 3.766548e-01	k: 18620	n:50000
PLA2G2A   50000 perm   10 sec   (5208 perm/sec)   p_kst 3.724000e-01   p_cons 6.920000e-03   p_joint 1.504000e-02

Joint ci ratio: 9.357514e-02	ci left: 2.708536e-02	ci right 2.976051e-02	k: 1704	n:60000
Cons ci ratio: 1.906042e-01	ci left: 6.332616e-03	ci right 7.682398e-03	k: 419	n:60000
KS ci ratio: 2.072431e-02	ci left: 3.696605e-01	ci right 3.774184e-01	k: 22412	n:60000
PLA2G2A   60000 perm   12 sec   (5073 perm/sec)   p_kst 3.735333e-01   p_cons 6.983333e-03   p_joint 2.840000e-02

Joint ci ratio: 9.260800e-02	ci left: 2.380016e-02	ci right 2.612516e-02	k: 1746	n:70000
Cons ci ratio: 1.784943e-01	ci left: 6.231877e-03	ci right 7.466677e-03	k: 478	n:70000
KS ci ratio: 1.925421e-02	ci left: 3.683179e-01	ci right 3.754928e-01	k: 26033	n:70000
PLA2G2A   70000 perm   14 sec   (4965 perm/sec)   p_kst 3.719000e-01   p_cons 6.828571e-03   p_joint 2.494286e-02

Joint ci ratio: 9.374840e-02	ci left: 2.038391e-02	ci right 2.240101e-02	k: 1710	n:80000
Cons ci ratio: 1.646249e-01	ci left: 6.457929e-03	ci right 7.628249e-03	k: 562	n:80000
KS ci ratio: 1.800013e-02	ci left: 3.688238e-01	ci right 3.755355e-01	k: 29774	n:80000
PLA2G2A   80000 perm   16 sec   (4866 perm/sec)   p_kst 3.721750e-01   p_cons 7.025000e-03   p_joint 2.137500e-02

Joint ci ratio: 8.115802e-02	ci left: 2.424026e-02	ci right 2.630160e-02	k: 2273	n:90000
Cons ci ratio: 1.563798e-01	ci left: 6.390929e-03	ci right 7.485658e-03	k: 623	n:90000
KS ci ratio: 1.696418e-02	ci left: 3.691958e-01	ci right 3.755236e-01	k: 33512	n:90000
PLA2G2A   90000 perm   19 sec   (4764 perm/sec)   p_kst 3.723556e-01   p_cons 6.922222e-03   p_joint 2.525556e-02

Joint ci ratio: 8.911992e-02	ci left: 1.813346e-02	ci right 1.983461e-02	k: 1897	n:100000
Cons ci ratio: 1.478547e-01	ci left: 6.463702e-03	ci right 7.505202e-03	k: 697	n:100000
KS ci ratio: 1.611247e-02	ci left: 3.688134e-01	ci right 3.748141e-01	k: 37181	n:100000
PLA2G2A   100000 perm   21 sec   (4671 perm/sec)   p_kst 3.718100e-01   p_cons 6.970000e-03   p_joint 1.897000e-02

Joint ci ratio: 8.509311e-02	ci left: 1.812125e-02	ci right 1.974062e-02	k: 2081	n:110000
Cons ci ratio: 1.420776e-01	ci left: 6.384226e-03	ci right 7.369317e-03	k: 755	n:110000
KS ci ratio: 1.536001e-02	ci left: 3.690336e-01	ci right 3.747549e-01	k: 40908	n:110000
PLA2G2A   110000 perm   24 sec   (4587 perm/sec)   p_kst 3.718909e-01   p_cons 6.863636e-03   p_joint 1.891818e-02

Joint ci ratio: 8.017186e-02	ci left: 1.874962e-02	ci right 2.032372e-02	k: 2343	n:120000
Cons ci ratio: 1.366752e-01	ci left: 6.342808e-03	ci right 7.281264e-03	k: 816	n:120000
KS ci ratio: 1.472341e-02	ci left: 3.686069e-01	ci right 3.740826e-01	k: 44561	n:120000
PLA2G2A   120000 perm   27 sec   (4502 perm/sec)   p_kst 3.713417e-01   p_cons 6.800000e-03   p_joint 1.952500e-02

Joint ci ratio: 8.102899e-02	ci left: 1.696753e-02	ci right 1.840794e-02	k: 2298	n:130000
Cons ci ratio: 1.323015e-01	ci left: 6.263726e-03	ci right 7.158491e-03	k: 871	n:130000
KS ci ratio: 1.414615e-02	ci left: 3.687034e-01	ci right 3.739639e-01	k: 48273	n:130000
PLA2G2A   130000 perm   29 sec   (4411 perm/sec)   p_kst 3.713308e-01   p_cons 6.700000e-03   p_joint 1.767692e-02

Joint ci ratio: 5.703863e-02	ci left: 3.170405e-02	ci right 3.357251e-02	k: 4568	n:140000
Cons ci ratio: 1.266818e-01	ci left: 6.362348e-03	ci right 7.229697e-03	k: 950	n:140000
KS ci ratio: 1.363645e-02	ci left: 3.686327e-01	ci right 3.737012e-01	k: 51963	n:140000
PLA2G2A   140000 perm   32 sec   (4334 perm/sec)   p_kst 3.711643e-01   p_cons 6.785714e-03   p_joint 3.262857e-02

Joint ci ratio: 5.791171e-02	ci left: 2.878096e-02	ci right 3.050396e-02	k: 4445	n:150000
Cons ci ratio: 1.226245e-01	ci left: 6.351553e-03	ci right 7.187683e-03	k: 1014	n:150000
KS ci ratio: 1.316817e-02	ci left: 3.689274e-01	ci right 3.738243e-01	k: 55706	n:150000
PLA2G2A   150000 perm   35 sec   (4262 perm/sec)   p_kst 3.713733e-01   p_cons 6.760000e-03   p_joint 2.963333e-02

Joint ci ratio: 5.847627e-02	ci left: 2.651930e-02	ci right 2.812289e-02	k: 4370	n:160000
Cons ci ratio: 1.191562e-01	ci left: 6.318235e-03	ci right 7.124796e-03	k: 1074	n:160000
KS ci ratio: 1.278111e-02	ci left: 3.678707e-01	ci right 3.726090e-01	k: 59238	n:160000
PLA2G2A   160000 perm   38 sec   (4193 perm/sec)   p_kst 3.702375e-01   p_cons 6.712500e-03   p_joint 2.731250e-02

Joint ci ratio: 3.744997e-02	ci left: 5.941206e-02	ci right 6.168531e-02	k: 10292	n:170000
Cons ci ratio: 8.678588e-02	ci left: 1.134388e-02	ci right 1.237875e-02	k: 2015	n:170000
KS ci ratio: 1.240239e-02	ci left: 3.678335e-01	ci right 3.724298e-01	k: 62922	n:170000
PLA2G2A   170000 perm   41 sec   (4129 perm/sec)   p_kst 3.701294e-01   p_cons 1.185294e-02   p_joint 6.054118e-02

Outputting figure to mutsig2_images.part000000000132/PLA2G2A.3_451_170000_0.37013_0.011853_0.060541.png
                gene_name: PLA2G2A
               theta_stop: 0.087 
                    nperm: 170000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 77 percent done.
PLCD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
PLCD4   10000 perm   2 sec   (5844 perm/sec)   p_kst 6.073000e-01   p_cons 4.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCD4.3_2349_10000_0.6073_0.4648_1.png
                gene_name: PLCD4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
PLCXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
Cons ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
KS ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
PLCXD2   10000 perm   2 sec   (6013 perm/sec)   p_kst 2.331000e-01   p_cons 5.923000e-01   p_joint 3.902000e-01

Outputting figure to mutsig2_images.part000000000132/PLCXD2.3_1151_10000_0.2331_0.5923_0.3902.png
                gene_name: PLCXD2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 80 percent done.
PLCZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
Cons ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
PLCZ1   10000 perm   2 sec   (5616 perm/sec)   p_kst 2.111000e-01   p_cons 4.022000e-01   p_joint 3.798000e-01

Outputting figure to mutsig2_images.part000000000132/PLCZ1.3_1883_10000_0.2111_0.4022_0.3798.png
                gene_name: PLCZ1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 82 percent done.
PLEKHB2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
PLEKHB2   10000 perm   2 sec   (6564 perm/sec)   p_kst 9.839000e-01   p_cons 6.870000e-02   p_joint 9.875000e-01

Joint ci ratio: 3.149619e-03	ci left: 9.856503e-01	ci right 9.888057e-01	k: 19746	n:20000
Cons ci ratio: 9.999791e-02	ci left: 6.777123e-02	ci right 7.495399e-02	k: 1426	n:20000
KS ci ratio: 3.573181e-03	ci left: 9.818480e-01	ci right 9.854093e-01	k: 19674	n:20000
PLEKHB2   20000 perm   3 sec   (5758 perm/sec)   p_kst 9.837000e-01   p_cons 7.130000e-02   p_joint 9.873000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHB2.2_697_20000_0.9837_0.0713_0.9873.png
                gene_name: PLEKHB2
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
PLA2G2F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
KS ci ratio: 8.103232e-03	ci left: 9.550321e-01	ci right 9.628976e-01	k: 9591	n:10000
PLA2G2F   10000 perm   1 sec   (7135 perm/sec)   p_kst 9.591000e-01   p_cons 9.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G2F.2_656_10000_0.9591_0.9183_1.png
                gene_name: PLA2G2F
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PLA2G4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.572648e-02	ci left: 8.544725e-01	ci right 8.681163e-01	k: 8614	n:10000
Cons ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
KS ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
PLA2G4F   10000 perm   2 sec   (5825 perm/sec)   p_kst 3.242000e-01   p_cons 6.945000e-01   p_joint 8.614000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4F.2_2630_10000_0.3242_0.6945_0.8614.png
                gene_name: PLA2G4F
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 88 percent done.
PLAGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
KS ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
PLAGL1   10000 perm   2 sec   (6418 perm/sec)   p_kst 1.110000e-02   p_cons 7.650000e-01   p_joint 4.270000e-02

Joint ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
Cons ci ratio: 1.559779e-02	ci left: 7.535144e-01	ci right 7.654101e-01	k: 15190	n:20000
KS ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
PLAGL1   20000 perm   4 sec   (5686 perm/sec)   p_kst 1.165000e-02   p_cons 7.595000e-01   p_joint 2.165000e-02

Joint ci ratio: 1.557932e-01	ci left: 1.905463e-02	ci right 2.230579e-02	k: 619	n:30000
Cons ci ratio: 1.262748e-02	ci left: 7.577433e-01	ci right 7.674058e-01	k: 22878	n:30000
KS ci ratio: 2.152558e-01	ci left: 9.755930e-03	ci right 1.214020e-02	k: 327	n:30000
PLAGL1   30000 perm   6 sec   (5395 perm/sec)   p_kst 1.090000e-02   p_cons 7.626000e-01   p_joint 2.063333e-02

Joint ci ratio: 1.327778e-01	ci left: 1.990741e-02	ci right 2.276267e-02	k: 852	n:40000
Cons ci ratio: 1.094478e-02	ci left: 7.580970e-01	ci right 7.664649e-01	k: 30492	n:40000
KS ci ratio: 1.839528e-01	ci left: 1.019181e-02	ci right 1.228005e-02	k: 448	n:40000
PLAGL1   40000 perm   8 sec   (5196 perm/sec)   p_kst 1.120000e-02   p_cons 7.623000e-01   p_joint 2.130000e-02

Joint ci ratio: 7.227753e-02	ci left: 5.354834e-02	ci right 5.758346e-02	k: 2777	n:50000
Cons ci ratio: 9.753656e-03	ci left: 7.598708e-01	ci right 7.673386e-01	k: 38181	n:50000
KS ci ratio: 1.684066e-01	ci left: 9.816677e-03	ci right 1.164080e-02	k: 535	n:50000
PLAGL1   50000 perm   10 sec   (5033 perm/sec)   p_kst 1.070000e-02   p_cons 7.636200e-01   p_joint 5.554000e-02

Joint ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
Cons ci ratio: 8.916654e-03	ci left: 7.596769e-01	ci right 7.664976e-01	k: 45786	n:60000
KS ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
PLAGL1   60000 perm   12 sec   (4915 perm/sec)   p_kst 1.066667e-02   p_cons 7.631000e-01   p_joint 2.066667e-02

Joint ci ratio: 1.010213e-01	ci left: 1.999236e-02	ci right 2.213331e-02	k: 1473	n:70000
Cons ci ratio: 8.228471e-03	ci left: 7.611090e-01	ci right 7.674119e-01	k: 53499	n:70000
KS ci ratio: 1.413244e-01	ci left: 1.010264e-02	ci right 1.165259e-02	k: 760	n:70000
PLAGL1   70000 perm   15 sec   (4807 perm/sec)   p_kst 1.085714e-02   p_cons 7.642714e-01   p_joint 2.104286e-02

Joint ci ratio: 9.437023e-02	ci left: 2.011525e-02	ci right 2.211969e-02	k: 1688	n:80000
Cons ci ratio: 7.698022e-03	ci left: 7.612677e-01	ci right 7.671631e-01	k: 61138	n:80000
KS ci ratio: 1.323289e-01	ci left: 1.013157e-02	ci right 1.157924e-02	k: 867	n:80000
PLAGL1   80000 perm   17 sec   (4699 perm/sec)   p_kst 1.083750e-02   p_cons 7.642250e-01   p_joint 2.110000e-02

Joint ci ratio: 8.933708e-02	ci left: 2.000794e-02	ci right 2.188978e-02	k: 1884	n:90000
Cons ci ratio: 7.246856e-03	ci left: 7.619816e-01	ci right 7.675347e-01	k: 68829	n:90000
KS ci ratio: 1.248579e-01	ci left: 1.015651e-02	ci right 1.151974e-02	k: 974	n:90000
PLAGL1   90000 perm   20 sec   (4599 perm/sec)   p_kst 1.082222e-02   p_cons 7.647667e-01   p_joint 2.093333e-02

Joint ci ratio: 8.457637e-02	ci left: 2.013981e-02	ci right 2.192812e-02	k: 2102	n:100000
Cons ci ratio: 6.877774e-03	ci left: 7.619780e-01	ci right 7.672467e-01	k: 76462	n:100000
KS ci ratio: 1.183036e-01	ci left: 1.021713e-02	ci right 1.151148e-02	k: 1085	n:100000
PLAGL1   100000 perm   22 sec   (4503 perm/sec)   p_kst 1.085000e-02   p_cons 7.646200e-01   p_joint 2.102000e-02

Joint ci ratio: 8.118523e-02	ci left: 1.991127e-02	ci right 2.160504e-02	k: 2282	n:110000
Cons ci ratio: 6.548624e-03	ci left: 7.626015e-01	ci right 7.676209e-01	k: 84163	n:110000
KS ci ratio: 1.141386e-01	ci left: 1.000320e-02	ci right 1.122281e-02	k: 1166	n:110000
PLAGL1   110000 perm   25 sec   (4426 perm/sec)   p_kst 1.060000e-02   p_cons 7.651182e-01   p_joint 2.074545e-02

Joint ci ratio: 7.757873e-02	ci left: 2.002449e-02	ci right 2.164879e-02	k: 2499	n:120000
Cons ci ratio: 6.270148e-03	ci left: 7.626908e-01	ci right 7.674963e-01	k: 91812	n:120000
KS ci ratio: 1.092834e-01	ci left: 1.002826e-02	ci right 1.119557e-02	k: 1272	n:120000
PLAGL1   120000 perm   28 sec   (4337 perm/sec)   p_kst 1.060000e-02   p_cons 7.651000e-01   p_joint 2.082500e-02

Joint ci ratio: 7.437182e-02	ci left: 2.014435e-02	ci right 2.170790e-02	k: 2719	n:130000
Cons ci ratio: 6.023518e-03	ci left: 7.628243e-01	ci right 7.674407e-01	k: 99468	n:130000
KS ci ratio: 1.047692e-01	ci left: 1.009535e-02	ci right 1.121894e-02	k: 1384	n:130000
PLAGL1   130000 perm   30 sec   (4266 perm/sec)   p_kst 1.064615e-02   p_cons 7.651385e-01   p_joint 2.091538e-02

Joint ci ratio: 7.148266e-02	ci left: 2.027634e-02	ci right 2.178645e-02	k: 2943	n:140000
Cons ci ratio: 5.811258e-03	ci left: 7.624833e-01	ci right 7.669343e-01	k: 107060	n:140000
KS ci ratio: 1.009424e-01	ci left: 1.011889e-02	ci right 1.120152e-02	k: 1491	n:140000
PLAGL1   140000 perm   33 sec   (4192 perm/sec)   p_kst 1.065000e-02   p_cons 7.647143e-01   p_joint 2.102143e-02

Joint ci ratio: 6.912921e-02	ci left: 2.026066e-02	ci right 2.171793e-02	k: 3147	n:150000
Cons ci ratio: 5.612663e-03	ci left: 7.626586e-01	ci right 7.669578e-01	k: 114722	n:150000
KS ci ratio: 9.723021e-02	ci left: 1.019849e-02	ci right 1.124722e-02	k: 1607	n:150000
PLAGL1   150000 perm   36 sec   (4125 perm/sec)   p_kst 1.071333e-02   p_cons 7.648133e-01   p_joint 2.098000e-02

Outputting figure to mutsig2_images.part000000000132/PLAGL1.2_1400_150000_0.010713_0.76481_0.02098.png
                gene_name: PLAGL1
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 89 percent done.
PLAUR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.564741e-02	ci left: 8.556968e-01	ci right 8.692912e-01	k: 8626	n:10000
KS ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
PLAUR   10000 perm   2 sec   (6379 perm/sec)   p_kst 8.498000e-01   p_cons 8.626000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLAUR.2_1132_10000_0.8498_0.8626_1.png
                gene_name: PLAUR
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PLBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
PLBD2   10000 perm   2 sec   (5993 perm/sec)   p_kst 1.170000e-02   p_cons 6.896000e-01   p_joint 1.021000e-01

Joint ci ratio: 7.020755e-02	ci left: 1.300953e-01	ci right 1.396111e-01	k: 2696	n:20000
Cons ci ratio: 1.864815e-02	ci left: 6.819292e-01	ci right 6.948160e-01	k: 13768	n:20000
KS ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
PLBD2   20000 perm   4 sec   (5339 perm/sec)   p_kst 1.320000e-02   p_cons 6.884000e-01   p_joint 1.348000e-01

Joint ci ratio: 9.182534e-02	ci left: 5.463110e-02	ci right 5.992171e-02	k: 1717	n:30000
Cons ci ratio: 1.520621e-02	ci left: 6.836936e-01	ci right 6.942031e-01	k: 20669	n:30000
KS ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
PLBD2   30000 perm   6 sec   (5116 perm/sec)   p_kst 1.253333e-02   p_cons 6.889667e-01   p_joint 5.723333e-02

Joint ci ratio: 6.175020e-02	ci left: 8.869175e-02	ci right 9.436771e-02	k: 3660	n:40000
Cons ci ratio: 1.314957e-02	ci left: 6.850399e-01	ci right 6.941326e-01	k: 27584	n:40000
KS ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
PLBD2   40000 perm   8 sec   (4973 perm/sec)   p_kst 1.220000e-02   p_cons 6.896000e-01   p_joint 9.150000e-02

Joint ci ratio: 5.566912e-02	ci left: 8.770288e-02	ci right 9.274481e-02	k: 4510	n:50000
Cons ci ratio: 1.177236e-02	ci left: 6.851224e-01	ci right 6.932557e-01	k: 34460	n:50000
KS ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
PLBD2   50000 perm   10 sec   (4861 perm/sec)   p_kst 1.246000e-02   p_cons 6.892000e-01   p_joint 9.020000e-02

Joint ci ratio: 7.462458e-02	ci left: 4.232358e-02	ci right 4.562072e-02	k: 2637	n:60000
Cons ci ratio: 1.073580e-02	ci left: 6.859140e-01	ci right 6.933343e-01	k: 41378	n:60000
KS ci ratio: 1.411008e-01	ci left: 1.180323e-02	ci right 1.361103e-02	k: 761	n:60000
PLBD2   60000 perm   13 sec   (4756 perm/sec)   p_kst 1.268333e-02   p_cons 6.896333e-01   p_joint 4.395000e-02

Joint ci ratio: 6.380846e-02	ci left: 4.952245e-02	ci right 5.280059e-02	k: 3580	n:70000
Cons ci ratio: 9.918322e-03	ci left: 6.871034e-01	ci right 6.939665e-01	k: 48338	n:70000
KS ci ratio: 1.296044e-01	ci left: 1.206333e-02	ci right 1.374884e-02	k: 902	n:70000
PLBD2   70000 perm   15 sec   (4656 perm/sec)   p_kst 1.288571e-02   p_cons 6.905429e-01   p_joint 5.114286e-02

Joint ci ratio: 5.662179e-02	ci left: 5.492227e-02	ci right 5.813499e-02	k: 4521	n:80000
Cons ci ratio: 9.277867e-03	ci left: 6.873211e-01	ci right 6.937401e-01	k: 55243	n:80000
KS ci ratio: 1.214726e-01	ci left: 1.206888e-02	ci right 1.364175e-02	k: 1027	n:80000
PLBD2   80000 perm   18 sec   (4546 perm/sec)   p_kst 1.283750e-02   p_cons 6.905375e-01   p_joint 5.651250e-02

Joint ci ratio: 3.993102e-02	ci left: 9.478759e-02	ci right 9.866067e-02	k: 8704	n:90000
Cons ci ratio: 8.747805e-03	ci left: 6.874793e-01	ci right 6.935307e-01	k: 62146	n:90000
KS ci ratio: 1.146009e-01	ci left: 1.209737e-02	ci right 1.357872e-02	k: 1154	n:90000
PLBD2   90000 perm   20 sec   (4459 perm/sec)   p_kst 1.282222e-02   p_cons 6.905111e-01   p_joint 9.671111e-02

Joint ci ratio: 3.795412e-02	ci left: 9.455764e-02	ci right 9.822581e-02	k: 9638	n:100000
Cons ci ratio: 8.289993e-03	ci left: 6.880955e-01	ci right 6.938335e-01	k: 69097	n:100000
KS ci ratio: 1.088633e-01	ci left: 1.210271e-02	ci right 1.350576e-02	k: 1279	n:100000
PLBD2   100000 perm   23 sec   (4365 perm/sec)   p_kst 1.279000e-02   p_cons 6.909700e-01   p_joint 9.638000e-02

Joint ci ratio: 3.636632e-02	ci left: 9.379635e-02	ci right 9.727955e-02	k: 10508	n:110000
Cons ci ratio: 7.893722e-03	ci left: 6.887974e-01	ci right 6.942652e-01	k: 76069	n:110000
KS ci ratio: 1.044377e-01	ci left: 1.198460e-02	ci right 1.331400e-02	k: 1390	n:110000
PLBD2   110000 perm   26 sec   (4294 perm/sec)   p_kst 1.263636e-02   p_cons 6.915364e-01   p_joint 9.552727e-02

Joint ci ratio: 4.512780e-02	ci left: 5.782176e-02	ci right 6.049959e-02	k: 7098	n:120000
Cons ci ratio: 7.564955e-03	ci left: 6.885021e-01	ci right 6.937387e-01	k: 82935	n:120000
KS ci ratio: 9.977377e-02	ci left: 1.206595e-02	ci right 1.334110e-02	k: 1523	n:120000
PLBD2   120000 perm   29 sec   (4199 perm/sec)   p_kst 1.269167e-02   p_cons 6.911250e-01   p_joint 5.915000e-02

Outputting figure to mutsig2_images.part000000000132/PLBD2.2_1818_120000_0.012692_0.69112_0.05915.png
                gene_name: PLBD2
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.060 

Current progress: 93 percent done.
PLCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
PLCD1   10000 perm   2 sec   (5749 perm/sec)   p_kst 8.226000e-01   p_cons 4.353000e-01   p_joint 9.285000e-01

Outputting figure to mutsig2_images.part000000000132/PLCD1.2_2432_10000_0.8226_0.4353_0.9285.png
                gene_name: PLCD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
PLCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
KS ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
PLCD3   10000 perm   2 sec   (5952 perm/sec)   p_kst 1.674000e-01   p_cons 8.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCD3.2_2429_10000_0.1674_0.871_1.png
                gene_name: PLCD3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PLEKHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
PLEKHA5   10000 perm   2 sec   (5426 perm/sec)   p_kst 8.147000e-01   p_cons 6.440000e-02   p_joint 5.491000e-01

Joint ci ratio: 6.007885e-02	ci left: 1.702012e-01	ci right 1.807934e-01	k: 3509	n:20000
Cons ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
KS ci ratio: 1.316717e-02	ci left: 8.104579e-01	ci right 8.212501e-01	k: 16318	n:20000
PLEKHA5   20000 perm   4 sec   (4840 perm/sec)   p_kst 8.159000e-01   p_cons 6.555000e-02   p_joint 1.754500e-01

Joint ci ratio: 5.025709e-02	ci left: 1.643459e-01	ci right 1.728517e-01	k: 5057	n:30000
Cons ci ratio: 8.539170e-02	ci left: 6.282390e-02	ci right 6.846057e-02	k: 1968	n:30000
KS ci ratio: 1.074130e-02	ci left: 8.117363e-01	ci right 8.205357e-01	k: 24485	n:30000
PLEKHA5   30000 perm   6 sec   (4623 perm/sec)   p_kst 8.161667e-01   p_cons 6.560000e-02   p_joint 1.685667e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA5.2_3769_30000_0.81617_0.0656_0.16857.png
                gene_name: PLEKHA5
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 98 percent done.
PLEKHA8
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000132
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 132 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1427>
Subject: Job 4422320: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1427>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000133> was used as the working directory.
Started at Wed Oct 24 18:03:18 2012
Results reported at Wed Oct 24 18:20:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000133.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000133.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 133  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000133.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1225.10 sec.
    Max Memory :      5339 MB
    Max Swap   :      7615 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
133
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 133
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 133: processing genes 11943 - 12033
Calculating significance of each gene.
Using projection method.
11943	PLEKHG3	9.993637e-01
11944	PLEKHG4	9.984622e-01
11945	PLEKHG4B	8.639011e-01
11946	PLEKHG5	7.937382e-01
11947	PLEKHG6	6.905248e-01
11948	PLEKHG7	1
11949	PLEKHH1	9.975969e-01
11950	PLEKHH2	9.112053e-01
11951	PLEKHH3	9.303511e-01
11952	PLEKHJ1	1
11953	PLEKHM1	9.406763e-01
11954	PLEKHM2	9.091531e-01
11955	PLEKHM3	1
11956	PLEKHN1	8.901309e-01
11957	PLEKHO1	8.209745e-01
11958	PLEKHO2	7.073070e-01
11959	PLG	1.123948e-02
11960	PLIN1	5.809939e-01
11961	PLIN2	4.213916e-01
11962	PLIN3	8.617363e-01
11963	PLIN4	9.997307e-01
11964	PLIN5	8.848123e-01
11965	PLK1	6.805464e-01
11966	PLK1S1	5.620583e-01
11967	PLK2	9.022662e-01
11968	PLK3	8.995863e-01
11969	PLK4	1
11970	PLLP	1
11971	PLN	6.635400e-02
11972	PLOD1	9.922826e-01
11973	PLOD2	3.097079e-01
11974	PLOD3	8.617236e-01
11975	PLP1	1
11976	PLP2	9.840936e-02
11977	PLRG1	9.650700e-01
11978	PLS1	7.711925e-01
11979	PLS3	3.892826e-01
11980	PLSCR1	8.653244e-01
11981	PLSCR2	1.564909e-01
11982	PLSCR3	1
11983	PLSCR4	4.559708e-02
11984	PLSCR5	4.209189e-01
11985	PLTP	6.670928e-01
11986	PLUNC	2.794330e-01
11987	PLVAP	1
11988	PLXDC1	2.192878e-01
11989	PLXDC2	8.693008e-03
11990	PLXNA1	9.978079e-01
11991	PLXNA2	9.999866e-01
11992	PLXNA3	1
11993	PLXNA4	1
11994	PLXNB1	9.983175e-01
11995	PLXNB2	8.777300e-01
11996	PLXNB3	9.998336e-01
11997	PLXNC1	9.871585e-01
11998	PLXND1	9.062449e-01
11999	PM20D1	9.170836e-01
12000/18094 12000	PM20D2	4.261165e-01
12001	PMAIP1	1
12002	PMCH	1
12003	PMEPA1	3.322863e-01
12004	PMF1	1
12005	PMFBP1	1.165041e-01
12006	PML	6.914896e-01
12007	PMM1	7.876725e-01
12008	PMM2	1
12009	PMP2	5.426311e-01
12010	PMP22	1
12011	PMPCA	1
12012	PMPCB	3.767066e-01
12013	PMS1	1.445785e-01
12014	PMS2	9.865842e-01
12015	PMVK	6.748071e-01
12016	PNCK	5.639307e-01
12017	PNKD	5.972321e-01
12018	PNKP	6.766579e-01
12019	PNLDC1	4.075996e-01
12020	PNLIP	8.811205e-03
12021	PNLIPRP1	8.422463e-01
12022	PNLIPRP2	2.243951e-03
12023	PNLIPRP3	1
12024	PNMA1	1
12025	PNMA2	8.958244e-01
12026	PNMA3	1
12027	PNMA5	9.092918e-01
12028	PNMAL1	1
12029	PNMAL2	1
12030	PNMT	1
12031	PNN	9.497137e-01
12032	PNO1	8.323359e-01
12033	PNOC	1
Done

Running MutSig 2:
Scatter job 133: processing genes 11943 - 12033
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLXNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
PLXNA4   10000 perm   4 sec   (2434 perm/sec)   p_kst 3.013000e-01   p_cons 5.474000e-01   p_joint 4.196000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA4.36_6123_10000_0.3013_0.5474_0.4196.png
                gene_name: PLXNA4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 2 percent done.
PLXNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
Cons ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KS ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
PLXNA2   10000 perm   3 sec   (3340 perm/sec)   p_kst 5.600000e-01   p_cons 1.601000e-01   p_joint 3.647000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA2.14_5809_10000_0.56_0.1601_0.3647.png
                gene_name: PLXNA2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 3 percent done.
PLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
Cons ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KS ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
PLG   10000 perm   2 sec   (4890 perm/sec)   p_kst 4.797000e-01   p_cons 4.971000e-01   p_joint 7.426000e-01

Outputting figure to mutsig2_images.part000000000133/PLG.13_2513_10000_0.4797_0.4971_0.7426.png
                gene_name: PLG
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 5 percent done.
PMFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
PMFBP1   10000 perm   2 sec   (4472 perm/sec)   p_kst 5.466000e-01   p_cons 5.680000e-02   p_joint 1.669000e-01

Joint ci ratio: 6.037111e-02	ci left: 1.688180e-01	ci right 1.793770e-01	k: 3481	n:20000
Cons ci ratio: 1.194431e-01	ci left: 4.804007e-02	ci right 5.419126e-02	k: 1021	n:20000
KS ci ratio: 2.541707e-02	ci left: 5.362655e-01	ci right 5.501219e-01	k: 10864	n:20000
PMFBP1   20000 perm   5 sec   (4031 perm/sec)   p_kst 5.432000e-01   p_cons 5.105000e-02   p_joint 1.740500e-01

Joint ci ratio: 5.358082e-02	ci left: 1.473282e-01	ci right 1.554727e-01	k: 4541	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 2.137158e-02	ci left: 5.229321e-01	ci right 5.342623e-01	k: 15858	n:30000
PMFBP1   30000 perm   8 sec   (3854 perm/sec)   p_kst 5.286000e-01   p_cons 5.120000e-02   p_joint 1.513667e-01

Outputting figure to mutsig2_images.part000000000133/PMFBP1.13_3164_30000_0.5286_0.0512_0.15137.png
                gene_name: PMFBP1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 7 percent done.
PLXNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
Cons ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
PLXNC1   10000 perm   3 sec   (3943 perm/sec)   p_kst 1.680000e-02   p_cons 6.194000e-01   p_joint 3.610000e-02

Joint ci ratio: 1.366820e-01	ci left: 3.679429e-02	ci right 4.224062e-02	k: 789	n:20000
Cons ci ratio: 2.216468e-02	ci left: 6.031495e-01	ci right 6.167185e-01	k: 12199	n:20000
KS ci ratio: 2.038660e-01	ci left: 1.629772e-02	ci right 2.004424e-02	k: 362	n:20000
PLXNC1   20000 perm   6 sec   (3613 perm/sec)   p_kst 1.810000e-02   p_cons 6.099500e-01   p_joint 3.945000e-02

Joint ci ratio: 1.152982e-01	ci left: 3.495708e-02	ci right 3.926649e-02	k: 1112	n:30000
Cons ci ratio: 1.740081e-02	ci left: 6.229698e-01	ci right 6.339387e-01	k: 18854	n:30000
KS ci ratio: 1.646946e-01	ci left: 1.700528e-02	ci right 2.008897e-02	k: 555	n:30000
PLXNC1   30000 perm   9 sec   (3466 perm/sec)   p_kst 1.850000e-02   p_cons 6.284667e-01   p_joint 3.706667e-02

Joint ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
Cons ci ratio: 1.509280e-02	ci left: 6.229911e-01	ci right 6.324904e-01	k: 25110	n:40000
KS ci ratio: 1.419812e-01	ci left: 1.737088e-02	ci right 2.004964e-02	k: 747	n:40000
PLXNC1   40000 perm   12 sec   (3369 perm/sec)   p_kst 1.867500e-02   p_cons 6.277500e-01   p_joint 3.490000e-02

Joint ci ratio: 8.699827e-02	ci left: 3.731991e-02	ci right 4.073388e-02	k: 1950	n:50000
Cons ci ratio: 1.350785e-02	ci left: 6.232049e-01	ci right 6.317003e-01	k: 31373	n:50000
KS ci ratio: 1.272003e-01	ci left: 1.745314e-02	ci right 1.984321e-02	k: 931	n:50000
PLXNC1   50000 perm   15 sec   (3301 perm/sec)   p_kst 1.862000e-02   p_cons 6.274600e-01   p_joint 3.900000e-02

Joint ci ratio: 8.403046e-02	ci left: 3.352735e-02	ci right 3.648452e-02	k: 2099	n:60000
Cons ci ratio: 1.234926e-02	ci left: 6.228822e-01	ci right 6.306388e-01	k: 37606	n:60000
KS ci ratio: 1.172117e-01	ci left: 1.722635e-02	ci right 1.938727e-02	k: 1097	n:60000
PLXNC1   60000 perm   19 sec   (3213 perm/sec)   p_kst 1.828333e-02   p_cons 6.267667e-01   p_joint 3.498333e-02

Joint ci ratio: 7.905985e-02	ci left: 3.258559e-02	ci right 3.528180e-02	k: 2374	n:70000
Cons ci ratio: 1.143554e-02	ci left: 6.230759e-01	ci right 6.302564e-01	k: 43867	n:70000
KS ci ratio: 1.055349e-01	ci left: 1.830757e-02	ci right 2.036112e-02	k: 1352	n:70000
PLXNC1   70000 perm   22 sec   (3164 perm/sec)   p_kst 1.931429e-02   p_cons 6.266714e-01   p_joint 3.391429e-02

Joint ci ratio: 6.785184e-02	ci left: 3.868944e-02	ci right 4.141904e-02	k: 3203	n:80000
Cons ci ratio: 1.069091e-02	ci left: 6.235755e-01	ci right 6.302903e-01	k: 50155	n:80000
KS ci ratio: 9.801941e-02	ci left: 1.863842e-02	ci right 2.057164e-02	k: 1567	n:80000
PLXNC1   80000 perm   26 sec   (3118 perm/sec)   p_kst 1.958750e-02   p_cons 6.269375e-01   p_joint 4.003750e-02

Outputting figure to mutsig2_images.part000000000133/PLXNC1.11_4831_80000_0.019588_0.62694_0.040037.png
                gene_name: PLXNC1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 8 percent done.
PLXDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
Cons ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
KS ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
PLXDC2   10000 perm   2 sec   (4843 perm/sec)   p_kst 2.370000e-02   p_cons 9.795000e-01   p_joint 6.470000e-02

Joint ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
Cons ci ratio: 3.893138e-03	ci left: 9.786969e-01	ci right 9.825616e-01	k: 19614	n:20000
KS ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
PLXDC2   20000 perm   5 sec   (4407 perm/sec)   p_kst 2.440000e-02   p_cons 9.807000e-01   p_joint 6.450000e-02

Joint ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
Cons ci ratio: 3.265725e-03	ci left: 9.779710e-01	ci right 9.812018e-01	k: 29389	n:30000
KS ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
PLXDC2   30000 perm   7 sec   (4236 perm/sec)   p_kst 2.573333e-02   p_cons 9.796333e-01   p_joint 6.533333e-02

Joint ci ratio: 7.920598e-02	ci left: 5.541006e-02	ci right 6.000441e-02	k: 2307	n:40000
Cons ci ratio: 2.856437e-03	ci left: 9.777795e-01	ci right 9.806004e-01	k: 39169	n:40000
KS ci ratio: 1.204984e-01	ci left: 2.421982e-02	ci right 2.734954e-02	k: 1030	n:40000
PLXDC2   40000 perm   10 sec   (4107 perm/sec)   p_kst 2.575000e-02   p_cons 9.792250e-01   p_joint 5.767500e-02

Joint ci ratio: 7.543464e-02	ci left: 4.930384e-02	ci right 5.318847e-02	k: 2561	n:50000
Cons ci ratio: 2.551141e-03	ci left: 9.779932e-01	ci right 9.805107e-01	k: 48964	n:50000
KS ci ratio: 1.064597e-01	ci left: 2.499281e-02	ci right 2.782254e-02	k: 1319	n:50000
PLXDC2   50000 perm   12 sec   (4018 perm/sec)   p_kst 2.638000e-02   p_cons 9.792800e-01   p_joint 5.122000e-02

Joint ci ratio: 7.121778e-02	ci left: 4.635226e-02	ci right 4.979162e-02	k: 2883	n:60000
Cons ci ratio: 2.338039e-03	ci left: 9.779407e-01	ci right 9.802459e-01	k: 58747	n:60000
KS ci ratio: 9.740541e-02	ci left: 2.500163e-02	ci right 2.757780e-02	k: 1576	n:60000
PLXDC2   60000 perm   15 sec   (3929 perm/sec)   p_kst 2.626667e-02   p_cons 9.791167e-01   p_joint 4.805000e-02

Outputting figure to mutsig2_images.part000000000133/PLXDC2.10_1646_60000_0.026267_0.97912_0.04805.png
                gene_name: PLXDC2
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 10 percent done.
PNLIPRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
PNLIPRP3   10000 perm   2 sec   (5609 perm/sec)   p_kst 8.016000e-01   p_cons 6.290000e-02   p_joint 1.883000e-01

Joint ci ratio: 4.890294e-02	ci left: 2.371678e-01	ci right 2.491070e-01	k: 4862	n:20000
Cons ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
KS ci ratio: 1.367310e-02	ci left: 7.987325e-01	ci right 8.097789e-01	k: 16086	n:20000
PNLIPRP3   20000 perm   4 sec   (4999 perm/sec)   p_kst 8.043000e-01   p_cons 6.020000e-02   p_joint 2.431000e-01

Joint ci ratio: 3.909900e-02	ci left: 2.460350e-01	ci right 2.558800e-01	k: 7528	n:30000
Cons ci ratio: 8.942081e-02	ci left: 5.750183e-02	ci right 6.291706e-02	k: 1805	n:30000
KS ci ratio: 1.064814e-02	ci left: 8.143602e-01	ci right 8.231113e-01	k: 24563	n:30000
PNLIPRP3   30000 perm   6 sec   (4747 perm/sec)   p_kst 8.187667e-01   p_cons 6.016667e-02   p_joint 2.509333e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP3.10_1452_30000_0.81877_0.060167_0.25093.png
                gene_name: PNLIPRP3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
PLEKHG4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.818964e-02	ci left: 6.497142e-01	ci right 6.683930e-01	k: 6591	n:10000
Cons ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
KS ci ratio: 4.147021e-02	ci left: 4.619752e-01	ci right 4.816412e-01	k: 4718	n:10000
PLEKHG4B   10000 perm   3 sec   (3655 perm/sec)   p_kst 4.718000e-01   p_cons 4.227000e-01   p_joint 6.591000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG4B.9_3888_10000_0.4718_0.4227_0.6591.png
                gene_name: PLEKHG4B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 13 percent done.
PLXNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
Cons ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
KS ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
PLXNA1   10000 perm   3 sec   (3323 perm/sec)   p_kst 4.640000e-01   p_cons 3.259000e-01   p_joint 4.588000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA1.9_5815_10000_0.464_0.3259_0.4588.png
                gene_name: PLXNA1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 15 percent done.
PLXND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
Cons ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
PLXND1   10000 perm   3 sec   (3455 perm/sec)   p_kst 2.042000e-01   p_cons 7.529000e-01   p_joint 3.825000e-01

Outputting figure to mutsig2_images.part000000000133/PLXND1.9_5922_10000_0.2042_0.7529_0.3825.png
                gene_name: PLXND1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
PLXNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
KS ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
PLXNA3   10000 perm   3 sec   (3515 perm/sec)   p_kst 9.204000e-01   p_cons 7.990000e-02   p_joint 2.186000e-01

Joint ci ratio: 4.537575e-02	ci left: 2.655435e-01	ci right 2.779229e-01	k: 5434	n:20000
Cons ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
KS ci ratio: 8.133780e-03	ci left: 9.169198e-01	ci right 9.244574e-01	k: 18415	n:20000
PLXNA3   20000 perm   6 sec   (3202 perm/sec)   p_kst 9.207500e-01   p_cons 7.895000e-02   p_joint 2.717000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA3.8_5744_20000_0.92075_0.07895_0.2717.png
                gene_name: PLXNA3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 18 percent done.
PLXNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
PLXNB2   10000 perm   3 sec   (3130 perm/sec)   p_kst 3.040000e-01   p_cons 4.302000e-01   p_joint 3.945000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB2.8_5657_10000_0.304_0.4302_0.3945.png
                gene_name: PLXNB2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 20 percent done.
PNLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
PNLIP   10000 perm   2 sec   (4198 perm/sec)   p_kst 7.890000e-02   p_cons 8.500000e-02   p_joint 6.970000e-02

Joint ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
Cons ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
KS ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
PNLIP   20000 perm   5 sec   (4161 perm/sec)   p_kst 8.105000e-02   p_cons 8.630000e-02   p_joint 7.600000e-02

Outputting figure to mutsig2_images.part000000000133/PNLIP.8_1446_20000_0.08105_0.0863_0.076.png
                gene_name: PNLIP
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.080 

Current progress: 22 percent done.
PML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
Cons ci ratio: 2.838430e-02	ci left: 6.465950e-01	ci right 6.653141e-01	k: 6560	n:10000
KS ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
PML   10000 perm   3 sec   (3924 perm/sec)   p_kst 2.026000e-01   p_cons 6.560000e-01   p_joint 3.696000e-01

Outputting figure to mutsig2_images.part000000000133/PML.7_3702_10000_0.2026_0.656_0.3696.png
                gene_name: PML
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 23 percent done.
PMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
Cons ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KS ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
PMS1   10000 perm   2 sec   (4794 perm/sec)   p_kst 3.587000e-01   p_cons 1.724000e-01   p_joint 3.401000e-01

Outputting figure to mutsig2_images.part000000000133/PMS1.7_2847_10000_0.3587_0.1724_0.3401.png
                gene_name: PMS1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 25 percent done.
PNLIPRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
PNLIPRP1   10000 perm   2 sec   (5793 perm/sec)   p_kst 4.320000e-02   p_cons 5.440000e-02   p_joint 1.400000e-02

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 1.241901e-01	ci left: 4.449603e-02	ci right 5.043643e-02	k: 948	n:20000
KS ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
PNLIPRP1   20000 perm   4 sec   (5107 perm/sec)   p_kst 4.255000e-02   p_cons 4.740000e-02   p_joint 2.415000e-02

Joint ci ratio: 1.283959e-01	ci left: 2.819549e-02	ci right 3.209621e-02	k: 903	n:30000
Cons ci ratio: 1.007164e-01	ci left: 4.564079e-02	ci right 5.051388e-02	k: 1441	n:30000
KS ci ratio: 1.058284e-01	ci left: 4.141435e-02	ci right 4.607452e-02	k: 1311	n:30000
PNLIPRP1   30000 perm   6 sec   (4847 perm/sec)   p_kst 4.370000e-02   p_cons 4.803333e-02   p_joint 3.010000e-02

Joint ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
Cons ci ratio: 8.700168e-02	ci left: 4.619480e-02	ci right 5.042109e-02	k: 1931	n:40000
KS ci ratio: 9.252026e-02	ci left: 4.095944e-02	ci right 4.495726e-02	k: 1717	n:40000
PNLIPRP1   40000 perm   9 sec   (4673 perm/sec)   p_kst 4.292500e-02   p_cons 4.827500e-02   p_joint 1.847500e-02

Joint ci ratio: 9.448344e-02	ci left: 3.170541e-02	ci right 3.486908e-02	k: 1663	n:50000
Cons ci ratio: 7.798665e-02	ci left: 4.622109e-02	ci right 4.999160e-02	k: 2404	n:50000
KS ci ratio: 8.250226e-02	ci left: 4.141493e-02	ci right 4.499835e-02	k: 2159	n:50000
PNLIPRP1   50000 perm   11 sec   (4538 perm/sec)   p_kst 4.318000e-02   p_cons 4.808000e-02   p_joint 3.326000e-02

Outputting figure to mutsig2_images.part000000000133/PNLIPRP1.7_1452_50000_0.04318_0.04808_0.03326.png
                gene_name: PNLIPRP1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 27 percent done.
PNLIPRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
Cons ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
KS ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
PNLIPRP2   10000 perm   2 sec   (5328 perm/sec)   p_kst 1.416000e-01   p_cons 5.007000e-01   p_joint 2.265000e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP2.7_1464_10000_0.1416_0.5007_0.2265.png
                gene_name: PNLIPRP2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
PLEKHH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.424469e-02	ci left: 8.769477e-01	ci right 8.896281e-01	k: 8834	n:10000
Cons ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
KS ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
PLEKHH2   10000 perm   2 sec   (4295 perm/sec)   p_kst 5.443000e-01   p_cons 7.505000e-01   p_joint 8.834000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH2.6_4598_10000_0.5443_0.7505_0.8834.png
                gene_name: PLEKHH2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 30 percent done.
PLIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
PLIN4   10000 perm   2 sec   (4616 perm/sec)   p_kst 4.705000e-01   p_cons 1.180000e-02   p_joint 8.430000e-02

Joint ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 2.954779e-02	ci left: 4.611147e-01	ci right 4.749946e-01	k: 9361	n:20000
PLIN4   20000 perm   5 sec   (4113 perm/sec)   p_kst 4.680500e-01   p_cons 1.220000e-02   p_joint 7.050000e-02

Joint ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
Cons ci ratio: 2.042102e-01	ci left: 1.089357e-02	ci right 1.340224e-02	k: 363	n:30000
KS ci ratio: 2.367963e-02	ci left: 4.717003e-01	ci right 4.830374e-01	k: 14321	n:30000
PLIN4   30000 perm   8 sec   (3913 perm/sec)   p_kst 4.773667e-01   p_cons 1.210000e-02   p_joint 5.660000e-02

Joint ci ratio: 8.855387e-02	ci left: 4.462828e-02	ci right 4.878785e-02	k: 1867	n:40000
Cons ci ratio: 1.736796e-01	ci left: 1.148207e-02	ci right 1.368954e-02	k: 502	n:40000
KS ci ratio: 2.051326e-02	ci left: 4.723195e-01	ci right 4.821338e-01	k: 19089	n:40000
PLIN4   40000 perm   11 sec   (3780 perm/sec)   p_kst 4.772250e-01   p_cons 1.255000e-02   p_joint 4.667500e-02

Joint ci ratio: 9.042984e-02	ci left: 3.457974e-02	ci right 3.787439e-02	k: 1810	n:50000
Cons ci ratio: 1.538335e-01	ci left: 1.183306e-02	ci right 1.382410e-02	k: 640	n:50000
KS ci ratio: 1.842830e-02	ci left: 4.706544e-01	ci right 4.794285e-01	k: 23752	n:50000
PLIN4   50000 perm   14 sec   (3689 perm/sec)   p_kst 4.750400e-01   p_cons 1.280000e-02   p_joint 3.620000e-02

Joint ci ratio: 7.826363e-02	ci left: 3.856045e-02	ci right 4.171756e-02	k: 2407	n:60000
Cons ci ratio: 1.362054e-01	ci left: 1.268849e-02	ci right 1.455899e-02	k: 816	n:60000
KS ci ratio: 1.680499e-02	ci left: 4.715636e-01	ci right 4.795721e-01	k: 28534	n:60000
PLIN4   60000 perm   17 sec   (3612 perm/sec)   p_kst 4.755667e-01   p_cons 1.360000e-02   p_joint 4.011667e-02

Joint ci ratio: 6.868921e-02	ci left: 4.292801e-02	ci right 4.599561e-02	k: 3111	n:70000
Cons ci ratio: 1.251185e-01	ci left: 1.296269e-02	ci right 1.470653e-02	k: 967	n:70000
KS ci ratio: 1.554317e-02	ci left: 4.723513e-01	ci right 4.797649e-01	k: 33324	n:70000
PLIN4   70000 perm   20 sec   (3549 perm/sec)   p_kst 4.760571e-01   p_cons 1.381429e-02   p_joint 4.444286e-02

Joint ci ratio: 6.164566e-02	ci left: 4.662740e-02	ci right 4.960548e-02	k: 3848	n:80000
Cons ci ratio: 1.165731e-01	ci left: 1.312441e-02	ci right 1.476111e-02	k: 1114	n:80000
KS ci ratio: 1.459066e-02	ci left: 4.708346e-01	ci right 4.777673e-01	k: 37944	n:80000
PLIN4   80000 perm   23 sec   (3489 perm/sec)   p_kst 4.743000e-01   p_cons 1.392500e-02   p_joint 4.810000e-02

Joint ci ratio: 5.766082e-02	ci left: 4.743430e-02	ci right 5.026153e-02	k: 4395	n:90000
Cons ci ratio: 1.099674e-01	ci left: 1.315607e-02	ci right 1.469772e-02	k: 1252	n:90000
KS ci ratio: 1.377648e-02	ci left: 4.703000e-01	ci right 4.768351e-01	k: 42621	n:90000
PLIN4   90000 perm   26 sec   (3431 perm/sec)   p_kst 4.735667e-01   p_cons 1.391111e-02   p_joint 4.883333e-02

Joint ci ratio: 5.524778e-02	ci left: 4.660426e-02	ci right 4.926204e-02	k: 4792	n:100000
Cons ci ratio: 1.044850e-01	ci left: 1.315427e-02	ci right 1.461413e-02	k: 1387	n:100000
KS ci ratio: 1.306421e-02	ci left: 4.706711e-01	ci right 4.768704e-01	k: 47377	n:100000
PLIN4   100000 perm   30 sec   (3377 perm/sec)   p_kst 4.737700e-01   p_cons 1.387000e-02   p_joint 4.792000e-02

Joint ci ratio: 5.350973e-02	ci left: 4.527206e-02	ci right 4.777010e-02	k: 5116	n:110000
Cons ci ratio: 9.909087e-02	ci left: 1.333172e-02	ci right 1.473044e-02	k: 1542	n:110000
KS ci ratio: 1.245210e-02	ci left: 4.709818e-01	ci right 4.768923e-01	k: 52133	n:110000
PLIN4   110000 perm   33 sec   (3318 perm/sec)   p_kst 4.739364e-01   p_cons 1.401818e-02   p_joint 4.650909e-02

Outputting figure to mutsig2_images.part000000000133/PLIN4.6_4098_110000_0.47394_0.014018_0.046509.png
                gene_name: PLIN4
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 32 percent done.
PLOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
Cons ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
KS ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
PLOD2   10000 perm   2 sec   (5245 perm/sec)   p_kst 1.241000e-01   p_cons 2.334000e-01   p_joint 1.716000e-01

Joint ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
Cons ci ratio: 5.017127e-02	ci left: 2.279482e-01	ci right 2.397292e-01	k: 4676	n:20000
KS ci ratio: 7.523915e-02	ci left: 1.149858e-01	ci right 1.240251e-01	k: 2389	n:20000
PLOD2   20000 perm   4 sec   (4675 perm/sec)   p_kst 1.194500e-01   p_cons 2.338000e-01   p_joint 1.161000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD2.6_2357_20000_0.11945_0.2338_0.1161.png
                gene_name: PLOD2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
PLEKHG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
Cons ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
KS ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
PLEKHG5   10000 perm   2 sec   (4882 perm/sec)   p_kst 1.066000e-01   p_cons 7.500000e-02   p_joint 5.370000e-02

Joint ci ratio: 8.622963e-02	ci left: 8.959754e-02	ci right 9.772104e-02	k: 1872	n:20000
Cons ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
KS ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
PLEKHG5   20000 perm   5 sec   (4384 perm/sec)   p_kst 1.050500e-01   p_cons 7.775000e-02   p_joint 9.360000e-02

Outputting figure to mutsig2_images.part000000000133/PLEKHG5.5_3348_20000_0.10505_0.07775_0.0936.png
                gene_name: PLEKHG5
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 35 percent done.
PLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
KS ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
PLK4   10000 perm   2 sec   (5335 perm/sec)   p_kst 9.580000e-01   p_cons 6.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLK4.5_2977_10000_0.958_0.6393_1.png
                gene_name: PLK4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PLSCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
PLSCR4   10000 perm   2 sec   (5681 perm/sec)   p_kst 3.611000e-01   p_cons 4.180000e-02   p_joint 1.465000e-01

Joint ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
Cons ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
KS ci ratio: 3.691416e-02	ci left: 3.538413e-01	ci right 3.671993e-01	k: 7210	n:20000
PLSCR4   20000 perm   4 sec   (5034 perm/sec)   p_kst 3.605000e-01   p_cons 4.625000e-02   p_joint 1.300500e-01

Joint ci ratio: 6.239548e-02	ci left: 1.126272e-01	ci right 1.199140e-01	k: 3487	n:30000
Cons ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
KS ci ratio: 2.989238e-02	ci left: 3.588843e-01	ci right 3.698086e-01	k: 10930	n:30000
PLSCR4   30000 perm   6 sec   (4798 perm/sec)   p_kst 3.643333e-01   p_cons 4.726667e-02   p_joint 1.162333e-01

Joint ci ratio: 4.730809e-02	ci left: 1.430232e-01	ci right 1.499782e-01	k: 5859	n:40000
Cons ci ratio: 8.702535e-02	ci left: 4.617031e-02	ci right 5.039557e-02	k: 1930	n:40000
KS ci ratio: 2.584522e-02	ci left: 3.603792e-01	ci right 3.698404e-01	k: 14604	n:40000
PLSCR4   40000 perm   9 sec   (4637 perm/sec)   p_kst 3.651000e-01   p_cons 4.825000e-02   p_joint 1.464750e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR4.5_1022_40000_0.3651_0.04825_0.14647.png
                gene_name: PLSCR4
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 38 percent done.
PLXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
KS ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
PLXDC1   10000 perm   2 sec   (6040 perm/sec)   p_kst 9.172000e-01   p_cons 1.489000e-01   p_joint 3.548000e-01

Outputting figure to mutsig2_images.part000000000133/PLXDC1.5_1559_10000_0.9172_0.1489_0.3548.png
                gene_name: PLXDC1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 40 percent done.
PNLDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 3.010923e-02	ci left: 6.193450e-01	ci right 6.383799e-01	k: 6289	n:10000
PNLDC1   10000 perm   2 sec   (5456 perm/sec)   p_kst 6.289000e-01   p_cons 1.602000e-01   p_joint 4.786000e-01

Outputting figure to mutsig2_images.part000000000133/PNLDC1.5_1635_10000_0.6289_0.1602_0.4786.png
                gene_name: PNLDC1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 42 percent done.
PLEKHG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.794921e-02	ci left: 8.191366e-01	ci right 8.340726e-01	k: 8267	n:10000
Cons ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
KS ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
PLEKHG6   10000 perm   2 sec   (5606 perm/sec)   p_kst 5.928000e-01   p_cons 7.752000e-01   p_joint 8.267000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG6.4_2479_10000_0.5928_0.7752_0.8267.png
                gene_name: PLEKHG6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 43 percent done.
PLEKHH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
Cons ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
KS ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
PLEKHH1   10000 perm   2 sec   (4562 perm/sec)   p_kst 7.566000e-01   p_cons 4.176000e-01   p_joint 7.738000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH1.4_4207_10000_0.7566_0.4176_0.7738.png
                gene_name: PLEKHH1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 45 percent done.
PLOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
Cons ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
KS ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
PLOD3   10000 perm   2 sec   (5365 perm/sec)   p_kst 4.027000e-01   p_cons 8.094000e-01   p_joint 6.797000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD3.4_2293_10000_0.4027_0.8094_0.6797.png
                gene_name: PLOD3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 47 percent done.
PLS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
KS ci ratio: 7.999633e-03	ci left: 9.560775e-01	ci right 9.638516e-01	k: 9601	n:10000
PLS3   10000 perm   2 sec   (5375 perm/sec)   p_kst 9.601000e-01   p_cons 7.900000e-03   p_joint 1.070000e-01

Joint ci ratio: 6.277616e-02	ci left: 1.580039e-01	ci right 1.682942e-01	k: 3262	n:20000
Cons ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
KS ci ratio: 5.712336e-03	ci left: 9.564690e-01	ci right 9.619965e-01	k: 19186	n:20000
PLS3   20000 perm   4 sec   (4780 perm/sec)   p_kst 9.593000e-01   p_cons 7.550000e-03   p_joint 1.631000e-01

Joint ci ratio: 5.965125e-02	ci left: 1.220671e-01	ci right 1.296055e-01	k: 3774	n:30000
Cons ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
KS ci ratio: 4.657336e-03	ci left: 9.571051e-01	ci right 9.616054e-01	k: 28782	n:30000
PLS3   30000 perm   7 sec   (4555 perm/sec)   p_kst 9.594000e-01   p_cons 7.766667e-03   p_joint 1.258000e-01

Joint ci ratio: 7.455113e-02	ci left: 6.223476e-02	ci right 6.707868e-02	k: 2585	n:40000
Cons ci ratio: 2.778885e-01	ci left: 4.262604e-03	ci right 5.660752e-03	k: 197	n:40000
KS ci ratio: 4.013584e-03	ci left: 9.578033e-01	ci right 9.616796e-01	k: 38391	n:40000
PLS3   40000 perm   9 sec   (4400 perm/sec)   p_kst 9.597750e-01   p_cons 4.925000e-03   p_joint 6.462500e-02

Joint ci ratio: 6.749354e-02	ci left: 6.106294e-02	ci right 6.534794e-02	k: 3159	n:50000
Cons ci ratio: 2.498228e-01	ci left: 4.288075e-03	ci right 5.530478e-03	k: 244	n:50000
KS ci ratio: 3.591298e-03	ci left: 9.579801e-01	ci right 9.614462e-01	k: 47987	n:50000
PLS3   50000 perm   12 sec   (4291 perm/sec)   p_kst 9.597400e-01   p_cons 4.880000e-03   p_joint 6.318000e-02

Joint ci ratio: 6.287015e-02	ci left: 5.893372e-02	ci right 6.277556e-02	k: 3650	n:60000
Cons ci ratio: 2.280564e-01	ci left: 4.341274e-03	ci right 5.474098e-03	k: 293	n:60000
KS ci ratio: 3.273611e-03	ci left: 9.582485e-01	ci right 9.614068e-01	k: 57591	n:60000
PLS3   60000 perm   14 sec   (4192 perm/sec)   p_kst 9.598500e-01   p_cons 4.883333e-03   p_joint 6.083333e-02

Joint ci ratio: 6.999384e-02	ci left: 4.138265e-02	ci right 4.439825e-02	k: 3001	n:70000
Cons ci ratio: 2.159366e-01	ci left: 4.179774e-03	ci right 5.204805e-03	k: 327	n:70000
KS ci ratio: 3.038272e-03	ci left: 9.581732e-01	ci right 9.611028e-01	k: 67176	n:70000
PLS3   70000 perm   17 sec   (4102 perm/sec)   p_kst 9.596571e-01   p_cons 4.671429e-03   p_joint 4.287143e-02

Joint ci ratio: 5.473515e-02	ci left: 5.859850e-02	ci right 6.190848e-02	k: 4819	n:80000
Cons ci ratio: 1.980113e-01	ci left: 4.392248e-03	ci right 5.369190e-03	k: 389	n:80000
KS ci ratio: 2.852785e-03	ci left: 9.579713e-01	ci right 9.607203e-01	k: 76749	n:80000
PLS3   80000 perm   20 sec   (4011 perm/sec)   p_kst 9.593625e-01   p_cons 4.862500e-03   p_joint 6.023750e-02

Joint ci ratio: 5.637810e-02	ci left: 4.953875e-02	ci right 5.242361e-02	k: 4587	n:90000
Cons ci ratio: 1.870622e-01	ci left: 4.401287e-03	ci right 5.319963e-03	k: 436	n:90000
KS ci ratio: 2.702833e-03	ci left: 9.576615e-01	ci right 9.602643e-01	k: 86308	n:90000
PLS3   90000 perm   23 sec   (3934 perm/sec)   p_kst 9.589778e-01   p_cons 4.844444e-03   p_joint 5.096667e-02

Joint ci ratio: 5.350034e-02	ci left: 4.958526e-02	ci right 5.232086e-02	k: 5094	n:100000
Cons ci ratio: 1.757534e-01	ci left: 4.514864e-03	ci right 5.394227e-03	k: 494	n:100000
KS ci ratio: 1.760867e-03	ci left: 9.793481e-01	ci right 9.810839e-01	k: 98023	n:100000
PLS3   100000 perm   26 sec   (3846 perm/sec)   p_kst 9.802300e-01   p_cons 4.940000e-03   p_joint 5.094000e-02

Joint ci ratio: 6.108911e-02	ci left: 3.497847e-02	ci right 3.719153e-02	k: 3968	n:110000
Cons ci ratio: 1.655247e-01	ci left: 4.652734e-03	ci right 5.500957e-03	k: 557	n:110000
KS ci ratio: 1.671114e-03	ci left: 9.795728e-01	ci right 9.812199e-01	k: 107845	n:110000
PLS3   110000 perm   29 sec   (3779 perm/sec)   p_kst 9.804091e-01   p_cons 5.063636e-03   p_joint 3.607273e-02

Joint ci ratio: 4.432050e-02	ci left: 5.984201e-02	ci right 6.256257e-02	k: 7343	n:120000
Cons ci ratio: 1.584422e-01	ci left: 4.672786e-03	ci right 5.484748e-03	k: 608	n:120000
KS ci ratio: 1.597543e-03	ci left: 9.796678e-01	ci right 9.812422e-01	k: 117656	n:120000
PLS3   120000 perm   32 sec   (3704 perm/sec)   p_kst 9.804667e-01   p_cons 5.066667e-03   p_joint 6.119167e-02

Joint ci ratio: 4.259889e-02	ci left: 5.984966e-02	ci right 6.246227e-02	k: 7949	n:130000
Cons ci ratio: 1.515067e-01	ci left: 4.734816e-03	ci right 5.518277e-03	k: 665	n:130000
KS ci ratio: 1.532894e-03	ci left: 9.797494e-01	ci right 9.812599e-01	k: 127467	n:130000
PLS3   130000 perm   36 sec   (3646 perm/sec)   p_kst 9.805154e-01   p_cons 5.115385e-03   p_joint 6.114615e-02

Joint ci ratio: 4.094890e-02	ci left: 6.017632e-02	ci right 6.269903e-02	k: 8600	n:140000
Cons ci ratio: 1.456115e-01	ci left: 4.774880e-03	ci right 5.531553e-03	k: 720	n:140000
KS ci ratio: 1.479088e-03	ci left: 9.797257e-01	ci right 9.811829e-01	k: 137265	n:140000
PLS3   140000 perm   39 sec   (3587 perm/sec)   p_kst 9.804643e-01   p_cons 5.142857e-03   p_joint 6.142857e-02

Joint ci ratio: 3.955208e-02	ci left: 6.024313e-02	ci right 6.268052e-02	k: 9218	n:150000
Cons ci ratio: 1.405370e-01	ci left: 4.797245e-03	ci right 5.528750e-03	k: 773	n:150000
KS ci ratio: 1.421354e-03	ci left: 9.799572e-01	ci right 9.813575e-01	k: 147100	n:150000
PLS3   150000 perm   42 sec   (3531 perm/sec)   p_kst 9.806667e-01   p_cons 5.153333e-03   p_joint 6.145333e-02

Joint ci ratio: 3.740749e-02	ci left: 6.302235e-02	ci right 6.543097e-02	k: 10275	n:160000
Cons ci ratio: 1.366244e-01	ci left: 4.768912e-03	ci right 5.474204e-03	k: 818	n:160000
KS ci ratio: 1.376130e-03	ci left: 9.799822e-01	ci right 9.813378e-01	k: 156907	n:160000
PLS3   160000 perm   46 sec   (3465 perm/sec)   p_kst 9.806687e-01   p_cons 5.112500e-03   p_joint 6.421875e-02

Joint ci ratio: 3.363902e-02	ci left: 7.272495e-02	ci right 7.521901e-02	k: 12574	n:170000
Cons ci ratio: 1.321783e-01	ci left: 4.806731e-03	ci right 5.492665e-03	k: 874	n:170000
KS ci ratio: 1.333931e-03	ci left: 9.800348e-01	ci right 9.813487e-01	k: 166719	n:170000
PLS3   170000 perm   50 sec   (3413 perm/sec)   p_kst 9.807000e-01   p_cons 5.141176e-03   p_joint 7.396471e-02

Joint ci ratio: 3.273337e-02	ci left: 7.258527e-02	ci right 7.500625e-02	k: 13282	n:180000
Cons ci ratio: 1.286968e-01	ci left: 4.797654e-03	ci right 5.462882e-03	k: 922	n:180000
KS ci ratio: 1.296908e-03	ci left: 9.800369e-01	ci right 9.813142e-01	k: 176523	n:180000
PLS3   180000 perm   54 sec   (3362 perm/sec)   p_kst 9.806833e-01   p_cons 5.122222e-03   p_joint 7.378889e-02

Joint ci ratio: 3.175280e-02	ci left: 7.307761e-02	ci right 7.544066e-02	k: 14108	n:190000
Cons ci ratio: 1.245771e-01	ci left: 4.861136e-03	ci right 5.511997e-03	k: 984	n:190000
KS ci ratio: 1.262104e-03	ci left: 9.800607e-01	ci right 9.813035e-01	k: 186331	n:190000
PLS3   190000 perm   57 sec   (3312 perm/sec)   p_kst 9.806895e-01   p_cons 5.178947e-03   p_joint 7.425263e-02

Joint ci ratio: 3.093820e-02	ci left: 7.315430e-02	ci right 7.545806e-02	k: 14860	n:200000
Cons ci ratio: 1.218869e-01	ci left: 4.831292e-03	ci right 5.463181e-03	k: 1028	n:200000
KS ci ratio: 1.228010e-03	ci left: 9.801434e-01	ci right 9.813526e-01	k: 196151	n:200000
PLS3   200000 perm   61 sec   (3267 perm/sec)   p_kst 9.807550e-01   p_cons 5.140000e-03   p_joint 7.430000e-02

Joint ci ratio: 3.016864e-02	ci left: 7.329058e-02	ci right 7.554023e-02	k: 15626	n:210000
Cons ci ratio: 1.186985e-01	ci left: 4.859878e-03	ci right 5.477711e-03	k: 1084	n:210000
KS ci ratio: 1.201209e-03	ci left: 9.800687e-01	ci right 9.812513e-01	k: 205940	n:210000
PLS3   210000 perm   65 sec   (3218 perm/sec)   p_kst 9.806667e-01   p_cons 5.161905e-03   p_joint 7.440952e-02

Joint ci ratio: 2.947224e-02	ci left: 7.332935e-02	ci right 7.552734e-02	k: 16373	n:220000
Cons ci ratio: 1.159524e-01	ci left: 4.868403e-03	ci right 5.472020e-03	k: 1136	n:220000
KS ci ratio: 1.178031e-03	ci left: 9.799366e-01	ci right 9.810961e-01	k: 215715	n:220000
PLS3   220000 perm   69 sec   (3175 perm/sec)   p_kst 9.805227e-01   p_cons 5.163636e-03   p_joint 7.442273e-02

Joint ci ratio: 2.882194e-02	ci left: 7.336528e-02	ci right 7.551502e-02	k: 17120	n:230000
Cons ci ratio: 1.138708e-01	ci left: 4.834088e-03	ci right 5.421968e-03	k: 1178	n:230000
KS ci ratio: 1.153341e-03	ci left: 9.799090e-01	ci right 9.810441e-01	k: 225511	n:230000
PLS3   230000 perm   73 sec   (3134 perm/sec)   p_kst 9.804826e-01   p_cons 5.121739e-03   p_joint 7.443478e-02

Joint ci ratio: 2.819327e-02	ci left: 7.349392e-02	ci right 7.559970e-02	k: 17890	n:240000
Cons ci ratio: 1.110774e-01	ci left: 4.875641e-03	ci right 5.453076e-03	k: 1238	n:240000
KS ci ratio: 1.128662e-03	ci left: 9.799347e-01	ci right 9.810454e-01	k: 235319	n:240000
PLS3   240000 perm   78 sec   (3092 perm/sec)   p_kst 9.804958e-01   p_cons 5.158333e-03   p_joint 7.454167e-02

Joint ci ratio: 2.766897e-02	ci left: 7.329080e-02	ci right 7.535108e-02	k: 18579	n:250000
Cons ci ratio: 1.090723e-01	ci left: 4.859547e-03	ci right 5.424019e-03	k: 1284	n:250000
KS ci ratio: 1.104461e-03	ci left: 9.799950e-01	ci right 9.810818e-01	k: 245136	n:250000
PLS3   250000 perm   82 sec   (3050 perm/sec)   p_kst 9.805440e-01   p_cons 5.136000e-03   p_joint 7.431600e-02

Joint ci ratio: 2.711135e-02	ci left: 7.341324e-02	ci right 7.543472e-02	k: 19349	n:260000
Cons ci ratio: 1.074157e-01	ci left: 4.822317e-03	ci right 5.373419e-03	k: 1324	n:260000
KS ci ratio: 1.082621e-03	ci left: 9.800197e-01	ci right 9.810850e-01	k: 254945	n:260000
PLS3   260000 perm   86 sec   (3010 perm/sec)   p_kst 9.805577e-01   p_cons 5.092308e-03   p_joint 7.441923e-02

Joint ci ratio: 2.658971e-02	ci left: 7.350859e-02	ci right 7.549315e-02	k: 20114	n:270000
Cons ci ratio: 1.052526e-01	ci left: 4.842001e-03	ci right 5.383520e-03	k: 1379	n:270000
KS ci ratio: 1.062852e-03	ci left: 9.800127e-01	ci right 9.810585e-01	k: 264746	n:270000
PLS3   270000 perm   91 sec   (2972 perm/sec)   p_kst 9.805407e-01   p_cons 5.107407e-03   p_joint 7.449630e-02

Joint ci ratio: 2.619002e-02	ci left: 7.311113e-02	ci right 7.505484e-02	k: 20742	n:280000
Cons ci ratio: 1.039089e-01	ci left: 4.794275e-03	ci right 5.323192e-03	k: 1415	n:280000
KS ci ratio: 1.041977e-03	ci left: 9.800860e-01	ci right 9.811112e-01	k: 274569	n:280000
PLS3   280000 perm   95 sec   (2934 perm/sec)   p_kst 9.806036e-01   p_cons 5.053571e-03   p_joint 7.407857e-02

Joint ci ratio: 2.574993e-02	ci left: 7.304638e-02	ci right 7.495525e-02	k: 21459	n:290000
Cons ci ratio: 1.020168e-01	ci left: 4.807009e-03	ci right 5.327095e-03	k: 1468	n:290000
KS ci ratio: 1.025060e-03	ci left: 9.800496e-01	ci right 9.810581e-01	k: 284362	n:290000
PLS3   290000 perm   100 sec   (2897 perm/sec)   p_kst 9.805586e-01   p_cons 5.062069e-03   p_joint 7.399655e-02

Joint ci ratio: 2.575449e-02	ci left: 7.076272e-02	ci right 7.261224e-02	k: 21505	n:300000
Cons ci ratio: 1.004236e-01	ci left: 4.799475e-03	ci right 5.310158e-03	k: 1515	n:300000
KS ci ratio: 1.009552e-03	ci left: 9.799921e-01	ci right 9.809852e-01	k: 294148	n:300000
PLS3   300000 perm   105 sec   (2860 perm/sec)   p_kst 9.804933e-01   p_cons 5.050000e-03   p_joint 7.168333e-02

Joint ci ratio: 2.533131e-02	ci left: 7.080063e-02	ci right 7.262029e-02	k: 22229	n:310000
Cons ci ratio: 9.871248e-02	ci left: 4.811365e-03	ci right 5.314085e-03	k: 1568	n:310000
KS ci ratio: 9.942993e-04	ci left: 9.799549e-01	ci right 9.809329e-01	k: 303939	n:310000
PLS3   310000 perm   110 sec   (2822 perm/sec)   p_kst 9.804484e-01   p_cons 5.058065e-03   p_joint 7.170645e-02

Outputting figure to mutsig2_images.part000000000133/PLS3.4_1953_310000_0.98045_0.0050581_0.071706.png
                gene_name: PLS3
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.0051 
      ci_cons_bounds_left: 0.0048 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.073 

Current progress: 48 percent done.
PLXNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
Cons ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
KS ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
PLXNB1   10000 perm   3 sec   (3571 perm/sec)   p_kst 2.876000e-01   p_cons 5.033000e-01   p_joint 4.495000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB1.4_6552_10000_0.2876_0.5033_0.4495.png
                gene_name: PLXNB1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 50 percent done.
PMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
Cons ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
KS ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
PMS2   10000 perm   2 sec   (5156 perm/sec)   p_kst 2.272000e-01   p_cons 2.231000e-01   p_joint 1.452000e-01

Outputting figure to mutsig2_images.part000000000133/PMS2.4_2649_10000_0.2272_0.2231_0.1452.png
                gene_name: PMS2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 52 percent done.
PNCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
Cons ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
KS ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
PNCK   10000 perm   2 sec   (6177 perm/sec)   p_kst 3.568000e-01   p_cons 1.653000e-01   p_joint 3.413000e-01

Outputting figure to mutsig2_images.part000000000133/PNCK.4_1378_10000_0.3568_0.1653_0.3413.png
                gene_name: PNCK
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 53 percent done.
PNKP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
KS ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
PNKP   10000 perm   2 sec   (5731 perm/sec)   p_kst 6.100000e-03   p_cons 2.640000e-02   p_joint 8.900000e-03

Joint ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
Cons ci ratio: 1.693159e-01	ci left: 2.388659e-02	ci right 2.835263e-02	k: 521	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
PNKP   20000 perm   4 sec   (5078 perm/sec)   p_kst 5.400000e-03   p_cons 2.605000e-02   p_joint 3.150000e-03

Joint ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
Cons ci ratio: 1.424101e-01	ci left: 2.287663e-02	ci right 2.641625e-02	k: 738	n:30000
KS ci ratio: 2.880939e-01	ci left: 5.250338e-03	ci right 7.047323e-03	k: 183	n:30000
PNKP   30000 perm   6 sec   (4822 perm/sec)   p_kst 6.100000e-03   p_cons 2.460000e-02   p_joint 4.200000e-03

Joint ci ratio: 3.319077e-01	ci left: 2.899187e-03	ci right 4.074717e-03	k: 138	n:40000
Cons ci ratio: 1.233527e-01	ci left: 2.310407e-02	ci right 2.616548e-02	k: 984	n:40000
KS ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
PNKP   40000 perm   9 sec   (4618 perm/sec)   p_kst 6.400000e-03   p_cons 2.460000e-02   p_joint 3.450000e-03

Joint ci ratio: 3.113622e-01	ci left: 2.668646e-03	ci right 3.670412e-03	k: 157	n:50000
Cons ci ratio: 1.113191e-01	ci left: 2.285127e-02	ci right 2.556435e-02	k: 1209	n:50000
KS ci ratio: 2.198171e-01	ci left: 5.625264e-03	ci right 7.032976e-03	k: 315	n:50000
PNKP   50000 perm   11 sec   (4469 perm/sec)   p_kst 6.300000e-03   p_cons 2.418000e-02   p_joint 3.140000e-03

Joint ci ratio: 3.357533e-01	ci left: 1.886806e-03	ci right 2.662597e-03	k: 135	n:60000
Cons ci ratio: 1.060855e-01	ci left: 2.106840e-02	ci right 2.344479e-02	k: 1334	n:60000
KS ci ratio: 2.031601e-01	ci left: 5.540088e-03	ci right 6.808392e-03	k: 369	n:60000
PNKP   60000 perm   14 sec   (4366 perm/sec)   p_kst 6.150000e-03   p_cons 2.223333e-02   p_joint 2.250000e-03

Joint ci ratio: 3.263282e-01	ci left: 1.722025e-03	ci right 2.406019e-03	k: 143	n:70000
Cons ci ratio: 8.970129e-02	ci left: 2.536459e-02	ci right 2.776059e-02	k: 1858	n:70000
KS ci ratio: 1.893445e-01	ci left: 5.509367e-03	ci right 6.675002e-03	k: 425	n:70000
PNKP   70000 perm   16 sec   (4264 perm/sec)   p_kst 6.071429e-03   p_cons 2.654286e-02   p_joint 2.042857e-03

Joint ci ratio: 2.044312e-01	ci left: 4.107298e-03	ci right 5.054182e-03	k: 365	n:80000
Cons ci ratio: 8.349647e-02	ci left: 2.569183e-02	ci right 2.794266e-02	k: 2144	n:80000
KS ci ratio: 1.772728e-01	ci left: 5.536317e-03	ci right 6.624970e-03	k: 485	n:80000
PNKP   80000 perm   19 sec   (4163 perm/sec)   p_kst 6.062500e-03   p_cons 2.680000e-02   p_joint 4.562500e-03

Joint ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
Cons ci ratio: 7.868987e-02	ci left: 2.577641e-02	ci right 2.789868e-02	k: 2414	n:90000
KS ci ratio: 1.684964e-01	ci left: 5.473942e-03	ci right 6.491628e-03	k: 537	n:90000
PNKP   90000 perm   22 sec   (4080 perm/sec)   p_kst 5.966667e-03   p_cons 2.682222e-02   p_joint 4.000000e-03

Joint ci ratio: 2.015083e-01	ci left: 3.390119e-03	ci right 4.159105e-03	k: 376	n:100000
Cons ci ratio: 7.461372e-02	ci left: 2.585687e-02	ci right 2.787070e-02	k: 2685	n:100000
KS ci ratio: 1.588871e-01	ci left: 5.569140e-03	ci right 6.539845e-03	k: 604	n:100000
PNKP   100000 perm   25 sec   (4007 perm/sec)   p_kst 6.040000e-03   p_cons 2.685000e-02   p_joint 3.760000e-03

Joint ci ratio: 1.929969e-01	ci left: 3.375754e-03	ci right 4.105341e-03	k: 410	n:110000
Cons ci ratio: 7.085362e-02	ci left: 2.611264e-02	ci right 2.803967e-02	k: 2977	n:110000
KS ci ratio: 1.514357e-01	ci left: 5.595883e-03	ci right 6.521360e-03	k: 665	n:110000
PNKP   110000 perm   28 sec   (3939 perm/sec)   p_kst 6.045455e-03   p_cons 2.706364e-02   p_joint 3.727273e-03

Joint ci ratio: 1.999819e-01	ci left: 2.872507e-03	ci right 3.518537e-03	k: 382	n:120000
Cons ci ratio: 6.772722e-02	ci left: 2.623774e-02	ci right 2.808520e-02	k: 3258	n:120000
KS ci ratio: 1.454472e-01	ci left: 5.578893e-03	ci right 6.461903e-03	k: 721	n:120000
PNKP   120000 perm   31 sec   (3871 perm/sec)   p_kst 6.008333e-03   p_cons 2.715000e-02   p_joint 3.183333e-03

Joint ci ratio: 1.961901e-01	ci left: 2.761191e-03	ci right 3.369003e-03	k: 397	n:130000
Cons ci ratio: 6.506628e-02	ci left: 2.627704e-02	ci right 2.805182e-02	k: 3530	n:130000
KS ci ratio: 1.397561e-01	ci left: 5.594825e-03	ci right 6.442821e-03	k: 781	n:130000
PNKP   130000 perm   34 sec   (3801 perm/sec)   p_kst 6.007692e-03   p_cons 2.715385e-02   p_joint 3.053846e-03

Joint ci ratio: 1.945037e-01	ci left: 2.611498e-03	ci right 3.180829e-03	k: 404	n:140000
Cons ci ratio: 6.284072e-02	ci left: 2.619237e-02	ci right 2.789872e-02	k: 3785	n:140000
KS ci ratio: 1.341250e-01	ci left: 5.657387e-03	ci right 6.477559e-03	k: 848	n:140000
PNKP   140000 perm   37 sec   (3739 perm/sec)   p_kst 6.057143e-03   p_cons 2.703571e-02   p_joint 2.885714e-03

Joint ci ratio: 1.874603e-01	ci left: 2.634188e-03	ci right 3.185305e-03	k: 435	n:150000
Cons ci ratio: 6.070552e-02	ci left: 2.622499e-02	ci right 2.787336e-02	k: 4056	n:150000
KS ci ratio: 1.301283e-01	ci left: 5.621876e-03	ci right 6.410736e-03	k: 901	n:150000
PNKP   150000 perm   41 sec   (3674 perm/sec)   p_kst 6.006667e-03   p_cons 2.704000e-02   p_joint 2.900000e-03

Joint ci ratio: 1.857761e-01	ci left: 2.517201e-03	ci right 3.038576e-03	k: 443	n:160000
Cons ci ratio: 5.866975e-02	ci left: 2.634679e-02	ci right 2.794540e-02	k: 4342	n:160000
KS ci ratio: 1.267360e-01	ci left: 5.566909e-03	ci right 6.326161e-03	k: 950	n:160000
PNKP   160000 perm   44 sec   (3616 perm/sec)   p_kst 5.937500e-03   p_cons 2.713750e-02   p_joint 2.768750e-03

Joint ci ratio: 1.837284e-01	ci left: 2.425223e-03	ci right 2.921391e-03	k: 453	n:170000
Cons ci ratio: 5.709913e-02	ci left: 2.620565e-02	ci right 2.775172e-02	k: 4585	n:170000
KS ci ratio: 1.234097e-01	ci left: 5.535751e-03	ci right 6.269489e-03	k: 1002	n:170000
PNKP   170000 perm   48 sec   (3559 perm/sec)   p_kst 5.894118e-03   p_cons 2.697059e-02   p_joint 2.664706e-03

Joint ci ratio: 1.827360e-01	ci left: 2.316980e-03	ci right 2.788158e-03	k: 458	n:180000
Cons ci ratio: 5.556550e-02	ci left: 2.615743e-02	ci right 2.765786e-02	k: 4842	n:180000
KS ci ratio: 1.202177e-01	ci left: 5.519065e-03	ci right 6.230324e-03	k: 1056	n:180000
PNKP   180000 perm   52 sec   (3495 perm/sec)   p_kst 5.866667e-03   p_cons 2.690000e-02   p_joint 2.544444e-03

Joint ci ratio: 1.924470e-01	ci left: 1.969271e-03	ci right 2.393515e-03	k: 413	n:190000
Cons ci ratio: 5.399160e-02	ci left: 2.626540e-02	ci right 2.772803e-02	k: 5128	n:190000
KS ci ratio: 1.169440e-01	ci left: 5.535014e-03	ci right 6.227561e-03	k: 1116	n:190000
PNKP   190000 perm   55 sec   (3440 perm/sec)   p_kst 5.873684e-03   p_cons 2.698947e-02   p_joint 2.173684e-03

Joint ci ratio: 1.917625e-01	ci left: 1.885078e-03	ci right 2.289571e-03	k: 416	n:200000
Cons ci ratio: 5.276504e-02	ci left: 2.614594e-02	ci right 2.756782e-02	k: 5370	n:200000
KS ci ratio: 1.140214e-01	ci left: 5.539887e-03	ci right 6.214556e-03	k: 1174	n:200000
PNKP   200000 perm   59 sec   (3382 perm/sec)   p_kst 5.870000e-03   p_cons 2.685000e-02   p_joint 2.080000e-03

Joint ci ratio: 1.929345e-01	ci left: 1.772640e-03	ci right 2.155602e-03	k: 411	n:210000
Cons ci ratio: 5.141173e-02	ci left: 2.624509e-02	ci right 2.763467e-02	k: 5656	n:210000
KS ci ratio: 1.116268e-01	ci left: 5.512082e-03	ci right 6.168338e-03	k: 1225	n:210000
PNKP   210000 perm   63 sec   (3332 perm/sec)   p_kst 5.833333e-03   p_cons 2.693333e-02   p_joint 1.957143e-03

Joint ci ratio: 1.931782e-01	ci left: 1.687732e-03	ci right 2.052865e-03	k: 410	n:220000
Cons ci ratio: 5.037130e-02	ci left: 2.611565e-02	ci right 2.746958e-02	k: 5893	n:220000
KS ci ratio: 1.089486e-01	ci left: 5.531160e-03	ci right 6.172874e-03	k: 1286	n:220000
PNKP   220000 perm   67 sec   (3284 perm/sec)   p_kst 5.845455e-03   p_cons 2.678636e-02   p_joint 1.863636e-03

Joint ci ratio: 1.958291e-01	ci left: 1.568846e-03	ci right 1.913471e-03	k: 399	n:230000
Cons ci ratio: 4.915319e-02	ci left: 2.624688e-02	ci right 2.757377e-02	k: 6188	n:230000
KS ci ratio: 1.062169e-01	ci left: 5.574147e-03	ci right 6.203620e-03	k: 1353	n:230000
PNKP   230000 perm   71 sec   (3238 perm/sec)   p_kst 5.882609e-03   p_cons 2.690435e-02   p_joint 1.734783e-03

Joint ci ratio: 1.960819e-01	ci left: 1.499510e-03	ci right 1.829379e-03	k: 398	n:240000
Cons ci ratio: 4.812627e-02	ci left: 2.625223e-02	ci right 2.755090e-02	k: 6455	n:240000
KS ci ratio: 1.040498e-01	ci left: 5.573146e-03	ci right 6.188879e-03	k: 1410	n:240000
PNKP   240000 perm   75 sec   (3188 perm/sec)   p_kst 5.875000e-03   p_cons 2.689583e-02   p_joint 1.658333e-03

Joint ci ratio: 2.025463e-01	ci left: 1.344507e-03	ci right 1.651236e-03	k: 373	n:250000
Cons ci ratio: 4.713232e-02	ci left: 2.628905e-02	ci right 2.756195e-02	k: 6730	n:250000
KS ci ratio: 1.021151e-01	ci left: 5.560649e-03	ci right 6.162893e-03	k: 1464	n:250000
PNKP   250000 perm   79 sec   (3145 perm/sec)   p_kst 5.856000e-03   p_cons 2.692000e-02   p_joint 1.492000e-03

Joint ci ratio: 2.036456e-01	ci left: 1.278189e-03	ci right 1.571567e-03	k: 369	n:260000
Cons ci ratio: 4.629949e-02	ci left: 2.620921e-02	ci right 2.745522e-02	k: 6975	n:260000
KS ci ratio: 1.005178e-01	ci left: 5.522961e-03	ci right 6.111214e-03	k: 1511	n:260000
PNKP   260000 perm   84 sec   (3103 perm/sec)   p_kst 5.811538e-03   p_cons 2.682692e-02   p_joint 1.419231e-03

Joint ci ratio: 2.228730e-01	ci left: 1.016948e-03	ci right 1.275433e-03	k: 308	n:270000
Cons ci ratio: 4.543822e-02	ci left: 2.621604e-02	ci right 2.743859e-02	k: 7242	n:270000
KS ci ratio: 9.873857e-02	ci left: 5.517034e-03	ci right 6.093652e-03	k: 1566	n:270000
PNKP   270000 perm   88 sec   (3062 perm/sec)   p_kst 5.800000e-03   p_cons 2.682222e-02   p_joint 1.140741e-03

Joint ci ratio: 2.308690e-01	ci left: 9.098835e-04	ci right 1.150637e-03	k: 287	n:280000
Cons ci ratio: 4.463551e-02	ci left: 2.620846e-02	ci right 2.740850e-02	k: 7505	n:280000
KS ci ratio: 9.663204e-02	ci left: 5.560411e-03	ci right 6.128462e-03	k: 1635	n:280000
PNKP   280000 perm   93 sec   (3020 perm/sec)   p_kst 5.839286e-03   p_cons 2.680357e-02   p_joint 1.025000e-03

Joint ci ratio: 2.308731e-01	ci left: 8.785065e-04	ci right 1.110962e-03	k: 287	n:290000
Cons ci ratio: 4.387679e-02	ci left: 2.619817e-02	ci right 2.737683e-02	k: 7767	n:290000
KS ci ratio: 9.479473e-02	ci left: 5.584083e-03	ci right 6.143103e-03	k: 1699	n:290000
PNKP   290000 perm   97 sec   (2981 perm/sec)   p_kst 5.858621e-03   p_cons 2.678276e-02   p_joint 9.896552e-04

Joint ci ratio: 2.304768e-01	ci left: 8.523623e-04	ci right 1.077457e-03	k: 288	n:300000
Cons ci ratio: 4.305917e-02	ci left: 2.630416e-02	ci right 2.746500e-02	k: 8064	n:300000
KS ci ratio: 9.340522e-02	ci left: 5.563943e-03	ci right 6.112335e-03	k: 1750	n:300000
PNKP   300000 perm   102 sec   (2943 perm/sec)   p_kst 5.833333e-03   p_cons 2.688000e-02   p_joint 9.600000e-04

Joint ci ratio: 1.250856e-01	ci left: 2.960473e-03	ci right 3.358582e-03	k: 978	n:310000
Cons ci ratio: 4.235332e-02	ci left: 2.632051e-02	ci right 2.746256e-02	k: 8335	n:310000
KS ci ratio: 9.171738e-02	ci left: 5.589288e-03	ci right 6.129689e-03	k: 1815	n:310000
PNKP   310000 perm   107 sec   (2905 perm/sec)   p_kst 5.854839e-03   p_cons 2.688710e-02   p_joint 3.154839e-03

Joint ci ratio: 1.239539e-01	ci left: 2.922452e-03	ci right 3.311632e-03	k: 996	n:320000
Cons ci ratio: 4.171596e-02	ci left: 2.629266e-02	ci right 2.741593e-02	k: 8592	n:320000
KS ci ratio: 9.031124e-02	ci left: 5.588694e-03	ci right 6.120315e-03	k: 1872	n:320000
PNKP   320000 perm   112 sec   (2868 perm/sec)   p_kst 5.850000e-03   p_cons 2.685000e-02   p_joint 3.112500e-03

Joint ci ratio: 1.248420e-01	ci left: 2.792777e-03	ci right 3.167550e-03	k: 982	n:330000
Cons ci ratio: 4.112563e-02	ci left: 2.624263e-02	ci right 2.734752e-02	k: 8841	n:330000
KS ci ratio: 8.875991e-02	ci left: 5.614864e-03	ci right 6.139325e-03	k: 1938	n:330000
PNKP   330000 perm   117 sec   (2831 perm/sec)   p_kst 5.872727e-03   p_cons 2.679091e-02   p_joint 2.975758e-03

Joint ci ratio: 1.233464e-01	ci left: 2.779033e-03	ci right 3.147167e-03	k: 1006	n:340000
Cons ci ratio: 4.050934e-02	ci left: 2.625972e-02	ci right 2.734837e-02	k: 9112	n:340000
KS ci ratio: 8.757191e-02	ci left: 5.602165e-03	ci right 6.118077e-03	k: 1991	n:340000
PNKP   340000 perm   122 sec   (2797 perm/sec)   p_kst 5.855882e-03   p_cons 2.680000e-02   p_joint 2.958824e-03

Joint ci ratio: 1.233517e-01	ci left: 2.699625e-03	ci right 3.057256e-03	k: 1006	n:350000
Cons ci ratio: 4.002086e-02	ci left: 2.614579e-02	ci right 2.721635e-02	k: 9337	n:350000
KS ci ratio: 8.613429e-02	ci left: 5.629377e-03	ci right 6.138856e-03	k: 2058	n:350000
PNKP   350000 perm   127 sec   (2763 perm/sec)   p_kst 5.880000e-03   p_cons 2.667714e-02   p_joint 2.874286e-03

Joint ci ratio: 1.217899e-01	ci left: 2.694643e-03	ci right 3.046768e-03	k: 1032	n:360000
Cons ci ratio: 3.947546e-02	ci left: 2.613456e-02	ci right 2.718974e-02	k: 9597	n:360000
KS ci ratio: 8.478528e-02	ci left: 5.652423e-03	ci right 6.155580e-03	k: 2124	n:360000
PNKP   360000 perm   132 sec   (2728 perm/sec)   p_kst 5.900000e-03   p_cons 2.665833e-02   p_joint 2.866667e-03

Joint ci ratio: 1.206867e-01	ci left: 2.671606e-03	ci right 3.017334e-03	k: 1051	n:370000
Cons ci ratio: 3.897208e-02	ci left: 2.609726e-02	ci right 2.713720e-02	k: 9847	n:370000
KS ci ratio: 8.357450e-02	ci left: 5.663696e-03	ci right 6.160306e-03	k: 2186	n:370000
PNKP   370000 perm   137 sec   (2696 perm/sec)   p_kst 5.908108e-03   p_cons 2.661351e-02   p_joint 2.840541e-03

Joint ci ratio: 1.197250e-01	ci left: 2.644690e-03	ci right 2.984014e-03	k: 1068	n:380000
Cons ci ratio: 3.847573e-02	ci left: 2.607765e-02	ci right 2.710327e-02	k: 10103	n:380000
KS ci ratio: 8.276658e-02	ci left: 5.625451e-03	ci right 6.113709e-03	k: 2229	n:380000
PNKP   380000 perm   143 sec   (2664 perm/sec)   p_kst 5.865789e-03   p_cons 2.658684e-02   p_joint 2.810526e-03

Joint ci ratio: 1.232473e-01	ci left: 2.427689e-03	ci right 2.749003e-03	k: 1008	n:390000
Cons ci ratio: 3.799976e-02	ci left: 2.605658e-02	ci right 2.706842e-02	k: 10358	n:390000
KS ci ratio: 8.163911e-02	ci left: 5.636917e-03	ci right 6.119187e-03	k: 2291	n:390000
PNKP   390000 perm   148 sec   (2634 perm/sec)   p_kst 5.874359e-03   p_cons 2.655897e-02   p_joint 2.584615e-03

Joint ci ratio: 1.221637e-01	ci left: 2.410614e-03	ci right 2.726660e-03	k: 1026	n:400000
Cons ci ratio: 3.755193e-02	ci left: 2.602177e-02	ci right 2.702010e-02	k: 10607	n:400000
KS ci ratio: 8.072917e-02	ci left: 5.623353e-03	ci right 6.098848e-03	k: 2343	n:400000
PNKP   400000 perm   154 sec   (2603 perm/sec)   p_kst 5.857500e-03   p_cons 2.651750e-02   p_joint 2.565000e-03

Joint ci ratio: 1.211081e-01	ci left: 2.394384e-03	ci right 2.705395e-03	k: 1044	n:410000
Cons ci ratio: 3.712133e-02	ci left: 2.598632e-02	ci right 2.697161e-02	k: 10855	n:410000
KS ci ratio: 8.000026e-02	ci left: 5.588964e-03	ci right 6.057086e-03	k: 2386	n:410000
PNKP   410000 perm   159 sec   (2574 perm/sec)   p_kst 5.819512e-03   p_cons 2.647561e-02   p_joint 2.546341e-03

Joint ci ratio: 1.200794e-01	ci left: 2.378938e-03	ci right 2.685132e-03	k: 1062	n:420000
Cons ci ratio: 3.663073e-02	ci left: 2.605644e-02	ci right 2.703106e-02	k: 11147	n:420000
KS ci ratio: 7.917611e-02	ci left: 5.572570e-03	ci right 6.034288e-03	k: 2436	n:420000
PNKP   420000 perm   165 sec   (2545 perm/sec)   p_kst 5.800000e-03   p_cons 2.654048e-02   p_joint 2.528571e-03

Joint ci ratio: 1.107574e-01	ci left: 2.743732e-03	ci right 3.067675e-03	k: 1248	n:430000
Cons ci ratio: 3.621113e-02	ci left: 2.604962e-02	ci right 2.701259e-02	k: 11407	n:430000
KS ci ratio: 7.842450e-02	ci left: 5.550121e-03	ci right 6.005414e-03	k: 2483	n:430000
PNKP   430000 perm   171 sec   (2517 perm/sec)   p_kst 5.774419e-03   p_cons 2.652791e-02   p_joint 2.902326e-03

Joint ci ratio: 1.106279e-01	ci left: 2.687999e-03	ci right 3.004967e-03	k: 1251	n:440000
Cons ci ratio: 3.579303e-02	ci left: 2.606119e-02	ci right 2.701324e-02	k: 11675	n:440000
KS ci ratio: 7.746334e-02	ci left: 5.562146e-03	ci right 6.012581e-03	k: 2545	n:440000
PNKP   440000 perm   177 sec   (2489 perm/sec)   p_kst 5.784091e-03   p_cons 2.653409e-02   p_joint 2.843182e-03

Joint ci ratio: 9.797927e-02	ci left: 3.370730e-03	ci right 3.720154e-03	k: 1594	n:450000
Cons ci ratio: 3.543177e-02	ci left: 2.601063e-02	ci right 2.695104e-02	k: 11915	n:450000
KS ci ratio: 7.643358e-02	ci left: 5.588928e-03	ci right 6.035248e-03	k: 2614	n:450000
PNKP   450000 perm   183 sec   (2463 perm/sec)   p_kst 5.808889e-03   p_cons 2.647778e-02   p_joint 3.542222e-03

Outputting figure to mutsig2_images.part000000000133/PNKP.4_1630_450000_0.0058089_0.026478_0.0035422.png
                gene_name: PNKP
               theta_stop: 0.098 
                    nperm: 450000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0056 
       ci_ks_bounds_right: 0.0060 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.0035 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0037 

Current progress: 55 percent done.
PLEKHG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.324725e-02	ci left: 7.310817e-01	ci right 7.483784e-01	k: 7398	n:10000
Cons ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
KS ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
PLEKHG3   10000 perm   2 sec   (5126 perm/sec)   p_kst 9.861000e-01   p_cons 4.036000e-01   p_joint 7.398000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG3.3_3548_10000_0.9861_0.4036_0.7398.png
                gene_name: PLEKHG3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 57 percent done.
PLEKHG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
Cons ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
PLEKHG4   10000 perm   2 sec   (4962 perm/sec)   p_kst 1.994000e-01   p_cons 3.206000e-01   p_joint 5.434000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG4.3_3660_10000_0.1994_0.3206_0.5434.png
                gene_name: PLEKHG4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 58 percent done.
PLEKHM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
Cons ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
KS ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
PLEKHM1   10000 perm   2 sec   (5608 perm/sec)   p_kst 2.863000e-01   p_cons 9.876000e-01   p_joint 5.149000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHM1.3_3215_10000_0.2863_0.9876_0.5149.png
                gene_name: PLEKHM1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 60 percent done.
PLIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
Cons ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
KS ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
PLIN2   10000 perm   2 sec   (6100 perm/sec)   p_kst 3.458000e-01   p_cons 2.230000e-01   p_joint 3.106000e-01

Outputting figure to mutsig2_images.part000000000133/PLIN2.3_1342_10000_0.3458_0.223_0.3106.png
                gene_name: PLIN2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 62 percent done.
PLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
PLK1   10000 perm   2 sec   (5970 perm/sec)   p_kst 8.520000e-02   p_cons 6.832000e-01   p_joint 1.530000e-01

Joint ci ratio: 6.626847e-02	ci left: 1.439433e-01	ci right 1.538590e-01	k: 2977	n:20000
Cons ci ratio: 1.869598e-02	ci left: 6.808232e-01	ci right 6.937224e-01	k: 13746	n:20000
KS ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
PLK1   20000 perm   4 sec   (5207 perm/sec)   p_kst 8.365000e-02   p_cons 6.873000e-01   p_joint 1.488500e-01

Outputting figure to mutsig2_images.part000000000133/PLK1.3_1852_20000_0.08365_0.6873_0.14885.png
                gene_name: PLK1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 63 percent done.
PLK1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
Cons ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
PLK1S1   10000 perm   2 sec   (5519 perm/sec)   p_kst 1.064000e-01   p_cons 9.522000e-01   p_joint 2.734000e-01

Joint ci ratio: 3.453546e-02	ci left: 3.849760e-01	ci right 3.985555e-01	k: 7835	n:20000
Cons ci ratio: 6.826588e-03	ci left: 9.395430e-01	ci right 9.460275e-01	k: 18857	n:20000
KS ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
PLK1S1   20000 perm   4 sec   (4989 perm/sec)   p_kst 1.088000e-01   p_cons 9.428500e-01   p_joint 3.917500e-01

Outputting figure to mutsig2_images.part000000000133/PLK1S1.3_2073_20000_0.1088_0.94285_0.39175.png
                gene_name: PLK1S1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 65 percent done.
PLSCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
Cons ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
KS ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
PLSCR2   10000 perm   1 sec   (6772 perm/sec)   p_kst 2.551000e-01   p_cons 3.132000e-01   p_joint 2.650000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR2.3_699_10000_0.2551_0.3132_0.265.png
                gene_name: PLSCR2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 67 percent done.
PLUNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
Cons ci ratio: 6.851645e-02	ci left: 2.380779e-01	ci right 2.550700e-01	k: 2465	n:10000
KS ci ratio: 2.309635e-02	ci left: 7.336080e-01	ci right 7.508507e-01	k: 7423	n:10000
PLUNC   10000 perm   2 sec   (6305 perm/sec)   p_kst 7.423000e-01   p_cons 2.465000e-01   p_joint 8.372000e-01

Outputting figure to mutsig2_images.part000000000133/PLUNC.3_799_10000_0.7423_0.2465_0.8372.png
                gene_name: PLUNC
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 68 percent done.
PLXNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.043147e-02	ci left: 2.281004e-01	ci right 2.448534e-01	k: 2364	n:10000
Cons ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
KS ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
PLXNB3   10000 perm   2 sec   (4044 perm/sec)   p_kst 2.701000e-01   p_cons 3.133000e-01   p_joint 2.364000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB3.3_5988_10000_0.2701_0.3133_0.2364.png
                gene_name: PLXNB3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 70 percent done.
PMPCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
PMPCB   10000 perm   2 sec   (5955 perm/sec)   p_kst 1.080000e-02   p_cons 7.808000e-01   p_joint 1.390000e-02

Joint ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
Cons ci ratio: 1.423317e-02	ci left: 7.856513e-01	ci right 7.969639e-01	k: 15827	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
PMPCB   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.045000e-02   p_cons 7.913500e-01   p_joint 1.350000e-02

Joint ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
Cons ci ratio: 1.189700e-02	ci left: 7.787955e-01	ci right 7.881496e-01	k: 23505	n:30000
KS ci ratio: 2.193492e-01	ci left: 9.377501e-03	ci right 1.171874e-02	k: 315	n:30000
PMPCB   30000 perm   6 sec   (4987 perm/sec)   p_kst 1.050000e-02   p_cons 7.835000e-01   p_joint 1.603333e-02

Joint ci ratio: 1.656890e-01	ci left: 1.265568e-02	ci right 1.496570e-02	k: 551	n:40000
Cons ci ratio: 1.033648e-02	ci left: 7.783235e-01	ci right 7.864354e-01	k: 31296	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
PMPCB   40000 perm   8 sec   (4746 perm/sec)   p_kst 9.975000e-03   p_cons 7.824000e-01   p_joint 1.377500e-02

Joint ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
Cons ci ratio: 9.267484e-03	ci left: 7.779321e-01	ci right 7.851951e-01	k: 39079	n:50000
KS ci ratio: 1.754940e-01	ci left: 9.012485e-03	ci right 1.076512e-02	k: 493	n:50000
PMPCB   50000 perm   11 sec   (4625 perm/sec)   p_kst 9.860000e-03   p_cons 7.815800e-01   p_joint 1.402000e-02

Joint ci ratio: 1.354510e-01	ci left: 1.283345e-02	ci right 1.471401e-02	k: 825	n:60000
Cons ci ratio: 8.450431e-03	ci left: 7.786408e-01	ci right 7.852652e-01	k: 46918	n:60000
KS ci ratio: 1.601763e-01	ci left: 9.091242e-03	ci right 1.069003e-02	k: 592	n:60000
PMPCB   60000 perm   13 sec   (4516 perm/sec)   p_kst 9.866667e-03   p_cons 7.819667e-01   p_joint 1.375000e-02

Joint ci ratio: 1.248572e-01	ci left: 1.301806e-02	ci right 1.476543e-02	k: 971	n:70000
Cons ci ratio: 7.807077e-03	ci left: 7.796117e-01	ci right 7.857363e-01	k: 54788	n:70000
KS ci ratio: 1.480607e-01	ci left: 9.179802e-03	ci right 1.066125e-02	k: 693	n:70000
PMPCB   70000 perm   16 sec   (4423 perm/sec)   p_kst 9.900000e-03   p_cons 7.826857e-01   p_joint 1.387143e-02

Joint ci ratio: 1.185845e-01	ci left: 1.267534e-02	ci right 1.428523e-02	k: 1077	n:80000
Cons ci ratio: 7.290735e-03	ci left: 7.803783e-01	ci right 7.861011e-01	k: 62660	n:80000
KS ci ratio: 1.379845e-01	ci left: 9.297941e-03	ci right 1.068794e-02	k: 798	n:80000
PMPCB   80000 perm   18 sec   (4326 perm/sec)   p_kst 9.975000e-03   p_cons 7.832500e-01   p_joint 1.346250e-02

Joint ci ratio: 1.131218e-01	ci left: 1.242132e-02	ci right 1.392141e-02	k: 1184	n:90000
Cons ci ratio: 6.857910e-03	ci left: 7.813303e-01	ci right 7.867181e-01	k: 70563	n:90000
KS ci ratio: 1.316460e-01	ci left: 9.112959e-03	ci right 1.040782e-02	k: 877	n:90000
PMPCB   90000 perm   21 sec   (4238 perm/sec)   p_kst 9.744444e-03   p_cons 7.840333e-01   p_joint 1.315556e-02

Joint ci ratio: 1.071795e-01	ci left: 1.249204e-02	ci right 1.391641e-02	k: 1319	n:100000
Cons ci ratio: 6.500092e-03	ci left: 7.817777e-01	ci right 7.868858e-01	k: 78434	n:100000
KS ci ratio: 1.245400e-01	ci left: 9.198699e-03	ci right 1.042998e-02	k: 980	n:100000
PMPCB   100000 perm   24 sec   (4159 perm/sec)   p_kst 9.800000e-03   p_cons 7.843400e-01   p_joint 1.319000e-02

Joint ci ratio: 1.023346e-01	ci left: 1.248955e-02	ci right 1.384539e-02	k: 1447	n:110000
Cons ci ratio: 6.210148e-03	ci left: 7.812093e-01	ci right 7.860848e-01	k: 86202	n:110000
KS ci ratio: 1.186388e-01	ci left: 9.243916e-03	ci right 1.041851e-02	k: 1080	n:110000
PMPCB   110000 perm   27 sec   (4072 perm/sec)   p_kst 9.818182e-03   p_cons 7.836545e-01   p_joint 1.315455e-02

Joint ci ratio: 9.879350e-02	ci left: 1.230982e-02	ci right 1.359722e-02	k: 1553	n:120000
Cons ci ratio: 5.952418e-03	ci left: 7.809329e-01	ci right 7.856034e-01	k: 93993	n:120000
KS ci ratio: 1.132622e-01	ci left: 9.323240e-03	ci right 1.045064e-02	k: 1185	n:120000
PMPCB   120000 perm   30 sec   (3998 perm/sec)   p_kst 9.875000e-03   p_cons 7.832750e-01   p_joint 1.294167e-02

Joint ci ratio: 9.633347e-02	ci left: 1.197068e-02	ci right 1.318967e-02	k: 1634	n:130000
Cons ci ratio: 5.724436e-03	ci left: 7.806951e-01	ci right 7.851846e-01	k: 101783	n:130000
KS ci ratio: 1.087263e-01	ci left: 9.361435e-03	ci right 1.044521e-02	k: 1286	n:130000
PMPCB   130000 perm   33 sec   (3922 perm/sec)   p_kst 9.892308e-03   p_cons 7.829462e-01   p_joint 1.256923e-02

Joint ci ratio: 9.146506e-02	ci left: 1.235732e-02	ci right 1.354869e-02	k: 1812	n:140000
Cons ci ratio: 5.524256e-03	ci left: 7.802794e-01	ci right 7.846089e-01	k: 109543	n:140000
KS ci ratio: 1.048860e-01	ci left: 9.360159e-03	ci right 1.040315e-02	k: 1382	n:140000
PMPCB   140000 perm   36 sec   (3854 perm/sec)   p_kst 9.871429e-03   p_cons 7.824500e-01   p_joint 1.294286e-02

Joint ci ratio: 8.830611e-02	ci left: 1.239373e-02	ci right 1.354521e-02	k: 1944	n:150000
Cons ci ratio: 5.335527e-03	ci left: 7.804436e-01	ci right 7.846254e-01	k: 117381	n:150000
KS ci ratio: 1.012532e-01	ci left: 9.392133e-03	ci right 1.040028e-02	k: 1483	n:150000
PMPCB   150000 perm   40 sec   (3786 perm/sec)   p_kst 9.886667e-03   p_cons 7.825400e-01   p_joint 1.296000e-02

Joint ci ratio: 8.553686e-02	ci left: 1.240174e-02	ci right 1.351602e-02	k: 2072	n:160000
Cons ci ratio: 5.167657e-03	ci left: 7.804076e-01	ci right 7.844571e-01	k: 125190	n:160000
KS ci ratio: 9.800465e-02	ci left: 9.414558e-03	ci right 1.039082e-02	k: 1583	n:160000
PMPCB   160000 perm   43 sec   (3723 perm/sec)   p_kst 9.893750e-03   p_cons 7.824375e-01   p_joint 1.295000e-02

Outputting figure to mutsig2_images.part000000000133/PMPCB.3_1522_160000_0.0098937_0.78244_0.01295.png
                gene_name: PMPCB
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0099 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 72 percent done.
PNKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
PNKD   10000 perm   2 sec   (6088 perm/sec)   p_kst 4.190000e-01   p_cons 1.577000e-01   p_joint 3.541000e-01

Outputting figure to mutsig2_images.part000000000133/PNKD.3_1563_10000_0.419_0.1577_0.3541.png
                gene_name: PNKD
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 73 percent done.
PLEKHG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
Cons ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
KS ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
PLEKHG7   10000 perm   2 sec   (6651 perm/sec)   p_kst 3.494000e-01   p_cons 3.537000e-01   p_joint 4.480000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG7.2_1184_10000_0.3494_0.3537_0.448.png
                gene_name: PLEKHG7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 75 percent done.
PLEKHM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
Cons ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
KS ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
PLEKHM2   10000 perm   2 sec   (5406 perm/sec)   p_kst 3.917000e-01   p_cons 8.484000e-01   p_joint 5.753000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHM2.2_3140_10000_0.3917_0.8484_0.5753.png
                gene_name: PLEKHM2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 77 percent done.
PLEKHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
Cons ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
KS ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
PLEKHO2   10000 perm   2 sec   (6392 perm/sec)   p_kst 6.230000e-02   p_cons 6.791000e-01   p_joint 3.565000e-01

Joint ci ratio: 4.650258e-02	ci left: 2.560150e-01	ci right 2.682542e-01	k: 5242	n:20000
Cons ci ratio: 1.913439e-02	ci left: 6.707201e-01	ci right 6.837283e-01	k: 13545	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
PLEKHO2   20000 perm   4 sec   (5557 perm/sec)   p_kst 6.190000e-02   p_cons 6.772500e-01   p_joint 2.621000e-01

Joint ci ratio: 4.328366e-02	ci left: 2.100316e-01	ci right 2.193570e-01	k: 6440	n:30000
Cons ci ratio: 1.555728e-02	ci left: 6.737837e-01	ci right 6.843816e-01	k: 20373	n:30000
KS ci ratio: 8.805403e-02	ci left: 5.923168e-02	ci right 6.472020e-02	k: 1858	n:30000
PLEKHO2   30000 perm   6 sec   (5269 perm/sec)   p_kst 6.193333e-02   p_cons 6.791000e-01   p_joint 2.146667e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHO2.2_1497_30000_0.061933_0.6791_0.21467.png
                gene_name: PLEKHO2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 78 percent done.
PLIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
Cons ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
PLIN1   10000 perm   2 sec   (6424 perm/sec)   p_kst 6.610000e-01   p_cons 1.620000e-01   p_joint 1.693000e-01

Outputting figure to mutsig2_images.part000000000133/PLIN1.2_1601_10000_0.661_0.162_0.1693.png
                gene_name: PLIN1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 80 percent done.
PLK2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 82 percent done.
PLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 3.779278e-02	ci left: 5.083526e-01	ci right 5.280368e-01	k: 5182	n:10000
PLK3   10000 perm   2 sec   (6083 perm/sec)   p_kst 5.182000e-01   p_cons 4.442000e-01   p_joint 6.758000e-01

Outputting figure to mutsig2_images.part000000000133/PLK3.2_2001_10000_0.5182_0.4442_0.6758.png
                gene_name: PLK3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 83 percent done.
PLOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
PLOD1   10000 perm   2 sec   (5887 perm/sec)   p_kst 3.752000e-01   p_cons 2.139000e-01   p_joint 1.194000e-01

Joint ci ratio: 7.441060e-02	ci left: 1.172975e-01	ci right 1.264127e-01	k: 2436	n:20000
Cons ci ratio: 5.323230e-02	ci left: 2.075903e-01	ci right 2.189932e-01	k: 4265	n:20000
KS ci ratio: 3.537602e-02	ci left: 3.736146e-01	ci right 3.871202e-01	k: 7607	n:20000
PLOD1   20000 perm   4 sec   (5202 perm/sec)   p_kst 3.803500e-01   p_cons 2.132500e-01   p_joint 1.218000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD1.2_2260_20000_0.38035_0.21325_0.1218.png
                gene_name: PLOD1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 85 percent done.
PLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
Cons ci ratio: 2.061251e-02	ci left: 7.751944e-01	ci right 7.914402e-01	k: 7834	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
PLP1   10000 perm   1 sec   (6828 perm/sec)   p_kst 7.330000e-01   p_cons 7.834000e-01   p_joint 9.543000e-01

Outputting figure to mutsig2_images.part000000000133/PLP1.2_862_10000_0.733_0.7834_0.9543.png
                gene_name: PLP1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 87 percent done.
PLP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
Cons ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
KS ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
PLP2   10000 perm   1 sec   (7296 perm/sec)   p_kst 8.710000e-02   p_cons 3.710000e-01   p_joint 3.121000e-01

Joint ci ratio: 4.215493e-02	ci left: 2.954423e-01	ci right 3.082153e-01	k: 6036	n:20000
Cons ci ratio: 3.628225e-02	ci left: 3.618089e-01	ci right 3.752293e-01	k: 7370	n:20000
KS ci ratio: 8.832658e-02	ci left: 8.567661e-02	ci right 9.364316e-02	k: 1792	n:20000
PLP2   20000 perm   3 sec   (6265 perm/sec)   p_kst 8.960000e-02   p_cons 3.685000e-01   p_joint 3.018000e-01

Outputting figure to mutsig2_images.part000000000133/PLP2.2_479_20000_0.0896_0.3685_0.3018.png
                gene_name: PLP2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 88 percent done.
PLRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
KS ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
PLRG1   10000 perm   2 sec   (6562 perm/sec)   p_kst 8.380000e-01   p_cons 1.866000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLRG1.2_1605_10000_0.838_0.1866_1.png
                gene_name: PLRG1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
KS ci ratio: 3.984213e-02	ci left: 4.819551e-01	ci right 5.016497e-01	k: 4918	n:10000
PLS1   10000 perm   2 sec   (6409 perm/sec)   p_kst 4.918000e-01   p_cons 1.079000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
KS ci ratio: 2.798105e-02	ci left: 4.882969e-01	ci right 5.022045e-01	k: 9905	n:20000
PLS1   20000 perm   4 sec   (5600 perm/sec)   p_kst 4.952500e-01   p_cons 1.065500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLS1.2_1950_20000_0.49525_0.10655_1.png
                gene_name: PLS1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
PLSCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
Cons ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
PLSCR5   10000 perm   1 sec   (7184 perm/sec)   p_kst 2.394000e-01   p_cons 3.955000e-01   p_joint 3.633000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR5.2_844_10000_0.2394_0.3955_0.3633.png
                gene_name: PLSCR5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 93 percent done.
PLTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.877317e-02	ci left: 4.955504e-01	ci right 5.152465e-01	k: 5054	n:10000
Cons ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
KS ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
PLTP   10000 perm   2 sec   (6261 perm/sec)   p_kst 3.821000e-01   p_cons 4.244000e-01   p_joint 5.054000e-01

Outputting figure to mutsig2_images.part000000000133/PLTP.2_1542_10000_0.3821_0.4244_0.5054.png
                gene_name: PLTP
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
PM20D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
KS ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
PM20D2   10000 perm   2 sec   (6531 perm/sec)   p_kst 5.314000e-01   p_cons 1.753000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PM20D2.2_1339_10000_0.5314_0.1753_1.png
                gene_name: PM20D2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PMEPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
KS ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
PMEPA1   10000 perm   1 sec   (7118 perm/sec)   p_kst 7.670000e-01   p_cons 7.102000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PMEPA1.2_888_10000_0.767_0.7102_1.png
                gene_name: PMEPA1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PNMAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
Cons ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
PNMAL1   10000 perm   1 sec   (6925 perm/sec)   p_kst 3.172000e-01   p_cons 9.745000e-01   p_joint 8.798000e-01

Outputting figure to mutsig2_images.part000000000133/PNMAL1.2_1350_10000_0.3172_0.9745_0.8798.png
                gene_name: PNMAL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000133
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 133 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4422324: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000134> was used as the working directory.
Started at Wed Oct 24 18:03:18 2012
Results reported at Wed Oct 24 18:11:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000134.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000134.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 134  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000134.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    538.90 sec.
    Max Memory :      5406 MB
    Max Swap   :      7934 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
134
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 134
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 134: processing genes 12034 - 12123
Calculating significance of each gene.
Using projection method.
12034	PNP	7.791858e-01
12035	PNPLA1	4.968181e-02
12036	PNPLA2	7.273060e-01
12037	PNPLA3	7.083251e-01
12038	PNPLA4	1
12039	PNPLA5	2.212481e-01
12040	PNPLA6	9.818543e-01
12041	PNPLA7	9.994355e-01
12042	PNPLA8	1
12043	PNPO	7.764564e-01
12044	PNPT1	4.018426e-01
12045	PNRC1	7.467594e-01
12046	POC1A	1.889487e-01
12047	POC1B	9.512119e-01
12048	POC5	5.613616e-01
12049	PODN	4.451475e-01
12050	PODNL1	1
12051	PODXL	7.453175e-01
12052	PODXL2	8.849233e-01
12053	POF1B	3.084868e-01
12054	POFUT1	9.054137e-01
12055	POFUT2	5.206908e-01
12056	POGK	9.848391e-01
12057	POGZ	9.997625e-01
12058	POLA1	9.871853e-01
12059	POLA2	1
12060	POLB	3.777945e-01
12061	POLD1	9.620686e-01
12062	POLD2	6.013962e-01
12063	POLD3	7.659691e-01
12064	POLD4	1
12065	POLDIP2	9.949518e-03
12066	POLDIP3	1
12067	POLE	8.836980e-01
12068	POLE2	8.744223e-01
12069	POLE3	1
12070	POLE4	1
In gene POLG the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 3531    n = 1	mu =   3.68e-07
12071	POLG	3.416078e-01
12072	POLG2	1
12073	POLH	1
12074	POLI	8.872325e-01
12075	POLK	6.926615e-01
12076	POLL	1
12077	POLM	9.899119e-02
12078	POLN	1
12079	POLQ	8.756095e-01
12080	POLR1A	9.963226e-01
12081	POLR1B	7.750947e-01
12082	POLR1C	1
12083	POLR1D	2.325258e-01
12084	POLR1E	9.042403e-01
12085	POLR2A	9.967119e-01
12086	POLR2B	1
12087	POLR2C	1.168402e-01
12088	POLR2D	1.289629e-02
12089	POLR2E	6.544285e-01
12090	POLR2F	1
12091	POLR2G	3.350859e-01
12092	POLR2H	1
12093	POLR2I	1
12094	POLR2J	1
12095	POLR2J2	1
12096	POLR2K	1
12097	POLR2L	3.857171e-01
12098	POLR3A	9.998363e-01
12099	POLR3B	8.220544e-03
12100	POLR3C	1
12101	POLR3D	4.926692e-01
12102	POLR3E	1
12103	POLR3F	1
12104	POLR3G	4.575732e-01
12105	POLR3GL	1
12106	POLR3H	7.001123e-01
12107	POLR3K	1
12108	POLRMT	9.926798e-01
12109	POM121	9.802062e-01
12110	POM121C	1
12111	POM121L12	1
12112	POMC	1
12113	POMGNT1	9.650352e-01
12114	POMP	1
12115	POMT1	8.884977e-01
12116	POMT2	8.874466e-01
12117	POMZP3	6.931843e-01
12118	PON1	4.459164e-01
12119	PON2	1
12120	PON3	5.956225e-02
12121	POP1	9.419728e-01
12122	POP4	2.923363e-01
12123	POP5	7.154585e-01
Done

Running MutSig 2:
Scatter job 134: processing genes 12034 - 12123
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POM121L12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
Cons ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
POM121L12   10000 perm   2 sec   (5163 perm/sec)   p_kst 3.540000e-01   p_cons 2.892000e-01   p_joint 2.406000e-01

Outputting figure to mutsig2_images.part000000000134/POM121L12.23_895_10000_0.354_0.2892_0.2406.png
                gene_name: POM121L12
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 2 percent done.
POLE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.779278e-02	ci left: 5.083526e-01	ci right 5.280368e-01	k: 5182	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
POLE   10000 perm   3 sec   (3680 perm/sec)   p_kst 7.405000e-01   p_cons 2.021000e-01   p_joint 5.182000e-01

Outputting figure to mutsig2_images.part000000000134/POLE.19_7057_10000_0.7405_0.2021_0.5182.png
                gene_name: POLE
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 4 percent done.
POLQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
KS ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
POLQ   10000 perm   3 sec   (3574 perm/sec)   p_kst 1.311000e-01   p_cons 3.662000e-01   p_joint 2.859000e-01

Joint ci ratio: 5.033281e-02	ci left: 2.268085e-01	ci right 2.385694e-01	k: 4653	n:20000
Cons ci ratio: 3.609204e-02	ci left: 3.642494e-01	ci right 3.776881e-01	k: 7419	n:20000
KS ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
POLQ   20000 perm   6 sec   (3302 perm/sec)   p_kst 1.326000e-01   p_cons 3.709500e-01   p_joint 2.326500e-01

Outputting figure to mutsig2_images.part000000000134/POLQ.17_7893_20000_0.1326_0.37095_0.23265.png
                gene_name: POLQ
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 6 percent done.
POLR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
Cons ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
POLR3B   10000 perm   2 sec   (4587 perm/sec)   p_kst 4.156000e-01   p_cons 1.204000e-01   p_joint 3.702000e-01

Joint ci ratio: 4.442083e-02	ci left: 2.739833e-01	ci right 2.864807e-01	k: 5604	n:20000
Cons ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
KS ci ratio: 3.381096e-02	ci left: 3.950948e-01	ci right 4.087337e-01	k: 8038	n:20000
POLR3B   20000 perm   5 sec   (4187 perm/sec)   p_kst 4.019000e-01   p_cons 1.042500e-01   p_joint 2.802000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3B.15_3514_20000_0.4019_0.10425_0.2802.png
                gene_name: POLR3B
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 8 percent done.
POLR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
Cons ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
KS ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
POLR3A   10000 perm   2 sec   (4254 perm/sec)   p_kst 6.349000e-01   p_cons 4.001000e-01   p_joint 9.000000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3A.12_4297_10000_0.6349_0.4001_0.9.png
                gene_name: POLR3A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 10 percent done.
POF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
Cons ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
KS ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
POF1B   10000 perm   2 sec   (5224 perm/sec)   p_kst 2.094000e-01   p_cons 2.177000e-01   p_joint 1.882000e-01

Outputting figure to mutsig2_images.part000000000134/POF1B.11_1834_10000_0.2094_0.2177_0.1882.png
                gene_name: POF1B
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 12 percent done.
POLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
Cons ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
POLG   10000 perm   2 sec   (4416 perm/sec)   p_kst 4.630000e-02   p_cons 7.593000e-01   p_joint 1.051000e-01

Joint ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
Cons ci ratio: 1.553802e-02	ci left: 7.549260e-01	ci right 7.667981e-01	k: 15218	n:20000
KS ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
POLG   20000 perm   5 sec   (4037 perm/sec)   p_kst 4.840000e-02   p_cons 7.609000e-01   p_joint 1.120000e-01

Joint ci ratio: 7.071954e-02	ci left: 8.960516e-02	ci right 9.620726e-02	k: 2786	n:30000
Cons ci ratio: 1.361964e-02	ci left: 7.290949e-01	ci right 7.391264e-01	k: 22024	n:30000
KS ci ratio: 1.021000e-01	ci left: 4.443729e-02	ci right 4.925096e-02	k: 1404	n:30000
POLG   30000 perm   8 sec   (3887 perm/sec)   p_kst 4.680000e-02   p_cons 7.341333e-01   p_joint 9.286667e-02

Joint ci ratio: 6.201158e-02	ci left: 8.800155e-02	ci right 9.365802e-02	k: 3632	n:40000
Cons ci ratio: 1.181261e-02	ci left: 7.291881e-01	ci right 7.378779e-01	k: 29342	n:40000
KS ci ratio: 8.897941e-02	ci left: 4.421228e-02	ci right 4.835390e-02	k: 1850	n:40000
POLG   40000 perm   11 sec   (3785 perm/sec)   p_kst 4.625000e-02   p_cons 7.335500e-01   p_joint 9.080000e-02

Outputting figure to mutsig2_images.part000000000134/POLG.11_3808_40000_0.04625_0.73355_0.0908.png
                gene_name: POLG
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 13 percent done.
POLR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
KS ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
POLR1B   10000 perm   2 sec   (4586 perm/sec)   p_kst 4.989000e-01   p_cons 4.450000e-02   p_joint 1.912000e-01

Joint ci ratio: 6.262714e-02	ci left: 1.586456e-01	ci right 1.689523e-01	k: 3275	n:20000
Cons ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
KS ci ratio: 2.786657e-02	ci left: 4.903464e-01	ci right 5.042544e-01	k: 9946	n:20000
POLR1B   20000 perm   5 sec   (4165 perm/sec)   p_kst 4.973000e-01   p_cons 4.480000e-02   p_joint 1.637500e-01

Joint ci ratio: 5.560859e-02	ci left: 1.381342e-01	ci right 1.460686e-01	k: 4262	n:30000
Cons ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
KS ci ratio: 2.389263e-02	ci left: 4.672366e-01	ci right 4.785687e-01	k: 14187	n:30000
POLR1B   30000 perm   7 sec   (4007 perm/sec)   p_kst 4.729000e-01   p_cons 4.493333e-02   p_joint 1.420667e-01

Joint ci ratio: 5.354669e-02	ci left: 1.149773e-01	ci right 1.213282e-01	k: 4725	n:40000
Cons ci ratio: 8.933422e-02	ci left: 4.386974e-02	ci right 4.799651e-02	k: 1836	n:40000
KS ci ratio: 2.071786e-02	ci left: 4.673723e-01	ci right 4.771817e-01	k: 18891	n:40000
POLR1B   40000 perm   10 sec   (3907 perm/sec)   p_kst 4.722750e-01   p_cons 4.590000e-02   p_joint 1.181250e-01

Outputting figure to mutsig2_images.part000000000134/POLR1B.10_3468_40000_0.47228_0.0459_0.11812.png
                gene_name: POLR1B
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 15 percent done.
POLR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
POLR2A   10000 perm   2 sec   (4126 perm/sec)   p_kst 5.490000e-02   p_cons 2.270000e-01   p_joint 7.600000e-02

Joint ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
Cons ci ratio: 5.093209e-02	ci left: 2.226463e-01	ci right 2.343327e-01	k: 4569	n:20000
KS ci ratio: 1.132152e-01	ci left: 5.333981e-02	ci right 5.978987e-02	k: 1130	n:20000
POLR2A   20000 perm   5 sec   (3778 perm/sec)   p_kst 5.650000e-02   p_cons 2.284500e-01   p_joint 7.715000e-02

Joint ci ratio: 8.141327e-02	ci left: 6.880553e-02	ci right 7.467774e-02	k: 2151	n:30000
Cons ci ratio: 4.150363e-02	ci left: 2.244204e-01	ci right 2.339654e-01	k: 6875	n:30000
KS ci ratio: 9.262872e-02	ci left: 5.371809e-02	ci right 5.896824e-02	k: 1689	n:30000
POLR2A   30000 perm   8 sec   (3647 perm/sec)   p_kst 5.630000e-02   p_cons 2.291667e-01   p_joint 7.170000e-02

Outputting figure to mutsig2_images.part000000000134/POLR2A.9_6029_30000_0.0563_0.22917_0.0717.png
                gene_name: POLR2A
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 17 percent done.
POLR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
Cons ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
KS ci ratio: 2.280672e-02	ci left: 7.384593e-01	ci right 7.555965e-01	k: 7471	n:10000
POLR1A   10000 perm   2 sec   (4476 perm/sec)   p_kst 7.471000e-01   p_cons 1.021000e-01   p_joint 4.160000e-01

Joint ci ratio: 3.954501e-02	ci left: 3.228865e-01	ci right 3.359631e-01	k: 6588	n:20000
Cons ci ratio: 8.003307e-02	ci left: 1.027974e-01	ci right 1.114172e-01	k: 2141	n:20000
KS ci ratio: 1.632751e-02	ci left: 7.362793e-01	ci right 7.484502e-01	k: 14848	n:20000
POLR1A   20000 perm   5 sec   (4080 perm/sec)   p_kst 7.424000e-01   p_cons 1.070500e-01   p_joint 3.294000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1A.8_5299_20000_0.7424_0.10705_0.3294.png
                gene_name: POLR1A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 19 percent done.
PNPLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
Cons ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
PNPLA1   10000 perm   2 sec   (5354 perm/sec)   p_kst 2.518000e-01   p_cons 6.050000e-01   p_joint 3.723000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA1.6_1658_10000_0.2518_0.605_0.3723.png
                gene_name: PNPLA1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 21 percent done.
POLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
Cons ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
KS ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
POLA1   10000 perm   2 sec   (4680 perm/sec)   p_kst 3.155000e-01   p_cons 1.168000e-01   p_joint 2.721000e-01

Joint ci ratio: 5.025542e-02	ci left: 2.273536e-01	ci right 2.391241e-01	k: 4664	n:20000
Cons ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
KS ci ratio: 4.054605e-02	ci left: 3.119952e-01	ci right 3.249576e-01	k: 6369	n:20000
POLA1   20000 perm   5 sec   (4251 perm/sec)   p_kst 3.184500e-01   p_cons 1.165500e-01   p_joint 2.332000e-01

Outputting figure to mutsig2_images.part000000000134/POLA1.6_4537_20000_0.31845_0.11655_0.2332.png
                gene_name: POLA1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 23 percent done.
POLM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
Cons ci ratio: 2.866778e-02	ci left: 6.420678e-01	ci right 6.608439e-01	k: 6515	n:10000
KS ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
POLM   10000 perm   2 sec   (5442 perm/sec)   p_kst 2.358000e-01   p_cons 6.515000e-01   p_joint 4.119000e-01

Outputting figure to mutsig2_images.part000000000134/POLM.6_1529_10000_0.2358_0.6515_0.4119.png
                gene_name: POLM
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 25 percent done.
PNPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
Cons ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
KS ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
PNPT1   10000 perm   2 sec   (5146 perm/sec)   p_kst 2.962000e-01   p_cons 4.605000e-01   p_joint 5.020000e-01

Outputting figure to mutsig2_images.part000000000134/PNPT1.5_2464_10000_0.2962_0.4605_0.502.png
                gene_name: PNPT1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 27 percent done.
POLDIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
Cons ci ratio: 1.467390e-03	ci left: 9.977780e-01	ci right 9.993076e-01	k: 9987	n:10000
KS ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
POLDIP2   10000 perm   2 sec   (6254 perm/sec)   p_kst 8.010000e-02   p_cons 9.987000e-01   p_joint 1.501000e-01

Joint ci ratio: 8.075267e-02	ci left: 1.011278e-01	ci right 1.096873e-01	k: 2107	n:20000
Cons ci ratio: 1.176913e-03	ci left: 9.975670e-01	ci right 9.987808e-01	k: 19965	n:20000
KS ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
POLDIP2   20000 perm   4 sec   (5580 perm/sec)   p_kst 7.635000e-02   p_cons 9.982500e-01   p_joint 1.053500e-01

Outputting figure to mutsig2_images.part000000000134/POLDIP2.5_1150_20000_0.07635_0.99825_0.10535.png
                gene_name: POLDIP2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 29 percent done.
POLR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KS ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
POLR2B   10000 perm   2 sec   (5335 perm/sec)   p_kst 1.476000e-01   p_cons 8.590000e-02   p_joint 1.548000e-01

Joint ci ratio: 5.949381e-02	ci left: 1.730173e-01	ci right 1.836764e-01	k: 3566	n:20000
Cons ci ratio: 9.088334e-02	ci left: 8.121946e-02	ci right 8.900166e-02	k: 1701	n:20000
KS ci ratio: 6.594358e-02	ci left: 1.451761e-01	ci right 1.551258e-01	k: 3002	n:20000
POLR2B   20000 perm   4 sec   (4809 perm/sec)   p_kst 1.501000e-01   p_cons 8.505000e-02   p_joint 1.783000e-01

Outputting figure to mutsig2_images.part000000000134/POLR2B.5_3625_20000_0.1501_0.08505_0.1783.png
                gene_name: POLR2B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 31 percent done.
POMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
POMT1   10000 perm   2 sec   (5454 perm/sec)   p_kst 3.313000e-01   p_cons 2.997000e-01   p_joint 3.714000e-01

Outputting figure to mutsig2_images.part000000000134/POMT1.5_2320_10000_0.3313_0.2997_0.3714.png
                gene_name: POMT1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
PON3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
Cons ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
PON3   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.037000e-01   p_cons 2.384000e-01   p_joint 5.162000e-01

Outputting figure to mutsig2_images.part000000000134/PON3.5_1101_10000_0.7037_0.2384_0.5162.png
                gene_name: PON3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 35 percent done.
POP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
POP1   10000 perm   2 sec   (5618 perm/sec)   p_kst 5.542000e-01   p_cons 7.636000e-01   p_joint 8.167000e-01

Outputting figure to mutsig2_images.part000000000134/POP1.5_3135_10000_0.5542_0.7636_0.8167.png
                gene_name: POP1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 37 percent done.
PNPLA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
Cons ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
KS ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
PNPLA5   10000 perm   2 sec   (6390 perm/sec)   p_kst 1.897000e-01   p_cons 5.708000e-01   p_joint 3.158000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA5.4_1326_10000_0.1897_0.5708_0.3158.png
                gene_name: PNPLA5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 38 percent done.
PNPLA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
PNPLA6   10000 perm   2 sec   (5227 perm/sec)   p_kst 7.556000e-01   p_cons 5.680000e-02   p_joint 2.061000e-01

Joint ci ratio: 5.399737e-02	ci left: 2.028876e-01	ci right 2.141972e-01	k: 4170	n:20000
Cons ci ratio: 1.143447e-01	ci left: 5.231807e-02	ci right 5.871192e-02	k: 1109	n:20000
KS ci ratio: 1.570236e-02	ci left: 7.510442e-01	ci right 7.629810e-01	k: 15141	n:20000
PNPLA6   20000 perm   4 sec   (4775 perm/sec)   p_kst 7.570500e-01   p_cons 5.545000e-02   p_joint 2.085000e-01

Joint ci ratio: 3.797420e-02	ci left: 2.570970e-01	ci right 2.670825e-01	k: 7862	n:30000
Cons ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
KS ci ratio: 1.267978e-02	ci left: 7.562330e-01	ci right 7.659164e-01	k: 22833	n:30000
PNPLA6   30000 perm   7 sec   (4590 perm/sec)   p_kst 7.611000e-01   p_cons 5.576667e-02   p_joint 2.620667e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA6.4_4260_30000_0.7611_0.055767_0.26207.png
                gene_name: PNPLA6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 40 percent done.
POC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
KS ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
POC1A   10000 perm   2 sec   (6050 perm/sec)   p_kst 6.839000e-01   p_cons 4.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POC1A.4_1268_10000_0.6839_0.4748_1.png
                gene_name: POC1A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
PODN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
Cons ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
KS ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
PODN   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.273000e-01   p_cons 4.705000e-01   p_joint 6.568000e-01

Outputting figure to mutsig2_images.part000000000134/PODN.4_2026_10000_0.4273_0.4705_0.6568.png
                gene_name: PODN
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 44 percent done.
POLR2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
Cons ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
POLR2C   10000 perm   2 sec   (6029 perm/sec)   p_kst 2.586000e-01   p_cons 3.120000e-01   p_joint 4.345000e-01

Outputting figure to mutsig2_images.part000000000134/POLR2C.4_864_10000_0.2586_0.312_0.4345.png
                gene_name: POLR2C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
POLR2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
Cons ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
KS ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
POLR2D   10000 perm   2 sec   (6247 perm/sec)   p_kst 1.381000e-01   p_cons 4.356000e-01   p_joint 2.647000e-01

Outputting figure to mutsig2_images.part000000000134/POLR2D.4_445_10000_0.1381_0.4356_0.2647.png
                gene_name: POLR2D
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 48 percent done.
POLR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.090116e-02	ci left: 6.070880e-01	ci right 6.262440e-01	k: 6167	n:10000
Cons ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
KS ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
POLR3C   10000 perm   2 sec   (6009 perm/sec)   p_kst 6.079000e-01   p_cons 3.701000e-01   p_joint 6.167000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3C.4_1661_10000_0.6079_0.3701_0.6167.png
                gene_name: POLR3C
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 50 percent done.
PNPLA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
PNPLA7   10000 perm   2 sec   (5147 perm/sec)   p_kst 5.103000e-01   p_cons 5.474000e-01   p_joint 6.725000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA7.3_4169_10000_0.5103_0.5474_0.6725.png
                gene_name: PNPLA7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 52 percent done.
PNPLA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
Cons ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
KS ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
PNPLA8   10000 perm   2 sec   (5585 perm/sec)   p_kst 3.840000e-01   p_cons 4.390000e-01   p_joint 4.905000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA8.3_2385_10000_0.384_0.439_0.4905.png
                gene_name: PNPLA8
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 54 percent done.
POC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
Cons ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
KS ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
POC5   10000 perm   2 sec   (5846 perm/sec)   p_kst 7.526000e-01   p_cons 2.238000e-01   p_joint 5.607000e-01

Outputting figure to mutsig2_images.part000000000134/POC5.3_1785_10000_0.7526_0.2238_0.5607.png
                gene_name: POC5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 56 percent done.
PODXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
Cons ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
KS ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
PODXL   10000 perm   2 sec   (6120 perm/sec)   p_kst 6.911000e-01   p_cons 1.381000e-01   p_joint 3.936000e-01

Outputting figure to mutsig2_images.part000000000134/PODXL.3_1713_10000_0.6911_0.1381_0.3936.png
                gene_name: PODXL
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 58 percent done.
POFUT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
POFUT2   10000 perm   2 sec   (6166 perm/sec)   p_kst 2.274000e-01   p_cons 4.937000e-01   p_joint 3.730000e-01

Outputting figure to mutsig2_images.part000000000134/POFUT2.3_1465_10000_0.2274_0.4937_0.373.png
                gene_name: POFUT2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
POGZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
Cons ci ratio: 6.896187e-02	ci left: 2.357064e-01	ci right 2.526429e-01	k: 2441	n:10000
KS ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
POGZ   10000 perm   2 sec   (5049 perm/sec)   p_kst 9.100000e-02   p_cons 2.441000e-01   p_joint 9.930000e-02

Joint ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
Cons ci ratio: 4.865839e-02	ci left: 2.390022e-01	ci right 2.509720e-01	k: 4899	n:20000
KS ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
POGZ   20000 perm   4 sec   (4570 perm/sec)   p_kst 8.800000e-02   p_cons 2.449500e-01   p_joint 1.155000e-01

Outputting figure to mutsig2_images.part000000000134/POGZ.3_4319_20000_0.088_0.24495_0.1155.png
                gene_name: POGZ
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
POLD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
Cons ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
KS ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
POLD3   10000 perm   2 sec   (5068 perm/sec)   p_kst 4.856000e-01   p_cons 9.713000e-01   p_joint 8.109000e-01

Outputting figure to mutsig2_images.part000000000134/POLD3.3_1449_10000_0.4856_0.9713_0.8109.png
                gene_name: POLD3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 63 percent done.
POLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
Cons ci ratio: 5.732748e-02	ci left: 3.093726e-01	ci right 3.277332e-01	k: 3185	n:10000
KS ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
POLK   10000 perm   2 sec   (4966 perm/sec)   p_kst 9.559000e-01   p_cons 3.185000e-01   p_joint 6.337000e-01

Outputting figure to mutsig2_images.part000000000134/POLK.3_2669_10000_0.9559_0.3185_0.6337.png
                gene_name: POLK
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 65 percent done.
PON1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
Cons ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
KS ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
PON1   10000 perm   2 sec   (6645 perm/sec)   p_kst 5.467000e-01   p_cons 4.842000e-01   p_joint 7.419000e-01

Outputting figure to mutsig2_images.part000000000134/PON1.2_1104_10000_0.5467_0.4842_0.7419.png
                gene_name: PON1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 67 percent done.
PNPLA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
KS ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
PNPLA3   10000 perm   2 sec   (6483 perm/sec)   p_kst 5.509000e-01   p_cons 2.881000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA3.2_1482_10000_0.5509_0.2881_0.5145.png
                gene_name: PNPLA3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 69 percent done.
POLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 1.984534e-02	ci left: 7.879663e-01	ci right 8.038610e-01	k: 7960	n:10000
POLA2   10000 perm   2 sec   (6515 perm/sec)   p_kst 7.960000e-01   p_cons 2.592000e-01   p_joint 4.566000e-01

Outputting figure to mutsig2_images.part000000000134/POLA2.2_1869_10000_0.796_0.2592_0.4566.png
                gene_name: POLA2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 71 percent done.
POLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
Cons ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
KS ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
POLB   10000 perm   1 sec   (6710 perm/sec)   p_kst 4.984000e-01   p_cons 8.702000e-01   p_joint 9.686000e-01

Outputting figure to mutsig2_images.part000000000134/POLB.2_1064_10000_0.4984_0.8702_0.9686.png
                gene_name: POLB
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 73 percent done.
POLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
Cons ci ratio: 2.167205e-02	ci left: 7.574741e-01	ci right 7.741708e-01	k: 7659	n:10000
KS ci ratio: 1.173349e-01	ci left: 9.447929e-02	ci right 1.063546e-01	k: 1003	n:10000
POLD1   10000 perm   2 sec   (5763 perm/sec)   p_kst 1.003000e-01   p_cons 7.659000e-01   p_joint 1.767000e-01

Joint ci ratio: 6.290290e-02	ci left: 1.574610e-01	ci right 1.677373e-01	k: 3251	n:20000
Cons ci ratio: 1.516204e-02	ci left: 7.638010e-01	ci right 7.755205e-01	k: 15394	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
POLD1   20000 perm   4 sec   (4820 perm/sec)   p_kst 1.024500e-01   p_cons 7.697000e-01   p_joint 1.625500e-01

Outputting figure to mutsig2_images.part000000000134/POLD1.2_3428_20000_0.10245_0.7697_0.16255.png
                gene_name: POLD1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 75 percent done.
POLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
KS ci ratio: 2.971706e-02	ci left: 6.254759e-01	ci right 6.444454e-01	k: 6350	n:10000
POLD2   10000 perm   2 sec   (6363 perm/sec)   p_kst 6.350000e-01   p_cons 3.250000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
KS ci ratio: 2.070013e-02	ci left: 6.352603e-01	ci right 6.485984e-01	k: 12839	n:20000
POLD2   20000 perm   4 sec   (5618 perm/sec)   p_kst 6.419500e-01   p_cons 3.595000e-02   p_joint 1

Joint ci ratio: 5.376739e-03	ci left: 9.439956e-01	ci right 9.491175e-01	k: 28398	n:30000
Cons ci ratio: 1.164438e-01	ci left: 3.427666e-02	ci right 3.854706e-02	k: 1091	n:30000
KS ci ratio: 1.687550e-02	ci left: 6.372137e-01	ci right 6.480920e-01	k: 19280	n:30000
POLD2   30000 perm   6 sec   (5335 perm/sec)   p_kst 6.426667e-01   p_cons 3.636667e-02   p_joint 9.466000e-01

Joint ci ratio: 4.653806e-03	ci left: 9.444025e-01	ci right 9.488323e-01	k: 37866	n:40000
Cons ci ratio: 1.010600e-01	ci left: 3.441514e-02	ci right 3.810258e-02	k: 1449	n:40000
KS ci ratio: 1.464788e-02	ci left: 6.369031e-01	ci right 6.463263e-01	k: 25665	n:40000
POLD2   40000 perm   8 sec   (5154 perm/sec)   p_kst 6.416250e-01   p_cons 3.622500e-02   p_joint 9.466500e-01

Joint ci ratio: 4.182484e-03	ci left: 9.441456e-01	ci right 9.481224e-01	k: 47308	n:50000
Cons ci ratio: 8.989046e-02	ci left: 3.499060e-02	ci right 3.830347e-02	k: 1831	n:50000
KS ci ratio: 1.313872e-02	ci left: 6.360955e-01	ci right 6.445282e-01	k: 32016	n:50000
POLD2   50000 perm   10 sec   (5014 perm/sec)   p_kst 6.403200e-01   p_cons 3.662000e-02   p_joint 9.461600e-01

Outputting figure to mutsig2_images.part000000000134/POLD2.2_1450_50000_0.64032_0.03662_0.94616.png
                gene_name: POLD2
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 77 percent done.
POLI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
Cons ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
POLI   10000 perm   2 sec   (5885 perm/sec)   p_kst 6.039000e-01   p_cons 2.507000e-01   p_joint 5.180000e-01

Outputting figure to mutsig2_images.part000000000134/POLI.2_2263_10000_0.6039_0.2507_0.518.png
                gene_name: POLI
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 79 percent done.
POLL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
POLL   10000 perm   2 sec   (6260 perm/sec)   p_kst 2.087000e-01   p_cons 3.387000e-01   p_joint 3.986000e-01

Outputting figure to mutsig2_images.part000000000134/POLL.2_1760_10000_0.2087_0.3387_0.3986.png
                gene_name: POLL
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 81 percent done.
POLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
Cons ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
POLN   10000 perm   2 sec   (5780 perm/sec)   p_kst 2.584000e-01   p_cons 1.108000e-01   p_joint 2.700000e-01

Joint ci ratio: 6.026635e-02	ci left: 1.693119e-01	ci right 1.798828e-01	k: 3491	n:20000
Cons ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
KS ci ratio: 4.673813e-02	ci left: 2.540800e-01	ci right 2.662898e-01	k: 5203	n:20000
POLN   20000 perm   4 sec   (5172 perm/sec)   p_kst 2.601500e-01   p_cons 1.093000e-01   p_joint 1.745500e-01

Outputting figure to mutsig2_images.part000000000134/POLN.2_2799_20000_0.26015_0.1093_0.17455.png
                gene_name: POLN
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 83 percent done.
POLR1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
POLR1D   10000 perm   2 sec   (6218 perm/sec)   p_kst 2.131000e-01   p_cons 8.907000e-01   p_joint 9.134000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1D.2_761_10000_0.2131_0.8907_0.9134.png
                gene_name: POLR1D
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 85 percent done.
POLR2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
Cons ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
KS ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
POLR2G   10000 perm   2 sec   (6486 perm/sec)   p_kst 5.842000e-01   p_cons 7.140000e-02   p_joint 8.870000e-02

Joint ci ratio: 1.013035e-01	ci left: 6.611102e-02	ci right 7.321471e-02	k: 1392	n:20000
Cons ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
KS ci ratio: 2.315313e-02	ci left: 5.821436e-01	ci right 5.958305e-01	k: 11780	n:20000
POLR2G   20000 perm   3 sec   (5943 perm/sec)   p_kst 5.890000e-01   p_cons 7.520000e-02   p_joint 6.960000e-02

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 4.808254e-02	ci left: 1.769877e-01	ci right 1.857407e-01	k: 5440	n:30000
KS ci ratio: 1.881255e-02	ci left: 5.857787e-01	ci right 5.969369e-01	k: 17741	n:30000
POLR2G   30000 perm   5 sec   (5714 perm/sec)   p_kst 5.913667e-01   p_cons 1.813333e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLR2G.2_551_30000_0.59137_0.18133_1.png
                gene_name: POLR2G
               theta_stop: 0.048 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
POLR2H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
KS ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
POLR2H   10000 perm   1 sec   (6933 perm/sec)   p_kst 5.275000e-01   p_cons 9.241000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLR2H.2_473_10000_0.5275_0.9241_1.png
                gene_name: POLR2H
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
POLR3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
POLR3D   10000 perm   1 sec   (6876 perm/sec)   p_kst 8.278000e-01   p_cons 2.810000e-02   p_joint 7.570000e-02

Joint ci ratio: 2.995138e-02	ci left: 4.543723e-01	ci right 4.682389e-01	k: 9226	n:20000
Cons ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
KS ci ratio: 1.268708e-02	ci left: 8.214831e-01	ci right 8.320218e-01	k: 16536	n:20000
POLR3D   20000 perm   3 sec   (6009 perm/sec)   p_kst 8.268000e-01   p_cons 2.890000e-02   p_joint 4.613000e-01

Joint ci ratio: 1.753769e-02	ci left: 6.192926e-01	ci right 6.302832e-01	k: 18744	n:30000
Cons ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
KS ci ratio: 1.035641e-02	ci left: 8.225369e-01	ci right 8.311330e-01	k: 24806	n:30000
POLR3D   30000 perm   5 sec   (5651 perm/sec)   p_kst 8.268667e-01   p_cons 2.940000e-02   p_joint 6.248000e-01

Joint ci ratio: 1.494380e-02	ci left: 6.276280e-01	ci right 6.371028e-01	k: 25295	n:40000
Cons ci ratio: 1.133121e-01	ci left: 2.740160e-02	ci right 3.071724e-02	k: 1161	n:40000
KS ci ratio: 8.964682e-03	ci left: 8.232570e-01	ci right 8.306954e-01	k: 33080	n:40000
POLR3D   40000 perm   7 sec   (5406 perm/sec)   p_kst 8.270000e-01   p_cons 2.902500e-02   p_joint 6.323750e-01

Joint ci ratio: 1.506269e-02	ci left: 5.709331e-01	ci right 5.796182e-01	k: 28764	n:50000
Cons ci ratio: 1.021676e-01	ci left: 2.713693e-02	ci right 3.007814e-02	k: 1429	n:50000
KS ci ratio: 7.985701e-03	ci left: 8.248244e-01	ci right 8.314575e-01	k: 41408	n:50000
POLR3D   50000 perm   9 sec   (5282 perm/sec)   p_kst 8.281600e-01   p_cons 2.858000e-02   p_joint 5.752800e-01

Joint ci ratio: 2.358023e-02	ci left: 3.116161e-01	ci right 3.190684e-01	k: 18920	n:60000
Cons ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
KS ci ratio: 7.279905e-03	ci left: 8.255100e-01	ci right 8.315582e-01	k: 49713	n:60000
POLR3D   60000 perm   12 sec   (5088 perm/sec)   p_kst 8.285500e-01   p_cons 2.830000e-02   p_joint 3.153333e-01

Outputting figure to mutsig2_images.part000000000134/POLR3D.2_1229_60000_0.82855_0.0283_0.31533.png
                gene_name: POLR3D
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 90 percent done.
POLR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
KS ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
POLR3E   10000 perm   2 sec   (5894 perm/sec)   p_kst 5.752000e-01   p_cons 2.143000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLR3E.2_2207_10000_0.5752_0.2143_1.png
                gene_name: POLR3E
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
POM121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
Cons ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
POM121   10000 perm   2 sec   (5656 perm/sec)   p_kst 8.744000e-01   p_cons 3.637000e-01   p_joint 7.519000e-01

Outputting figure to mutsig2_images.part000000000134/POM121.2_3003_10000_0.8744_0.3637_0.7519.png
                gene_name: POM121
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 94 percent done.
POM121C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
KS ci ratio: 1.965582e-02	ci left: 7.911103e-01	ci right 8.069151e-01	k: 7991	n:10000
POM121C   10000 perm   2 sec   (5642 perm/sec)   p_kst 7.991000e-01   p_cons 2.146000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000134/POM121C.2_3012_10000_0.7991_0.2146_0.3663.png
                gene_name: POM121C
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 96 percent done.
POMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
KS ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
POMT2   10000 perm   2 sec   (6065 perm/sec)   p_kst 4.590000e-01   p_cons 4.778000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000134/POMT2.2_2337_10000_0.459_0.4778_0.8719.png
                gene_name: POMT2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
POP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
Cons ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
KS ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
POP4   10000 perm   1 sec   (6853 perm/sec)   p_kst 5.778000e-01   p_cons 3.644000e-01   p_joint 3.875000e-01

Outputting figure to mutsig2_images.part000000000134/POP4.2_691_10000_0.5778_0.3644_0.3875.png
                gene_name: POP4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000134
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 134 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 4422327: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000135> was used as the working directory.
Started at Wed Oct 24 18:19:06 2012
Results reported at Wed Oct 24 18:30:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000135.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000135.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 135  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000135.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    792.68 sec.
    Max Memory :      5375 MB
    Max Swap   :      7639 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
135
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 135
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 135: processing genes 12124 - 12213
Calculating significance of each gene.
Using projection method.
12124	POP7	1
12125	POPDC2	6.019934e-01
12126	POPDC3	1
12127	POR	1
12128	PORCN	3.629076e-01
12129	POSTN	3.842243e-02
12130	POT1	5.927828e-04
12131	POTEA	1.133645e-03
12132	POTEC	1
12133	POTEE	7.541479e-01
12134	POTEF	9.956085e-01
12135	POTEG	1
12136	POTEH	4.021145e-01
12137	POTEM	1
12138	POU1F1	1.966124e-01
12139	POU2AF1	6.513282e-01
12140	POU2F1	7.217397e-01
12141	POU2F2	7.561517e-01
12142	POU2F3	7.609620e-01
12143	POU3F1	5.606444e-01
12144	POU3F2	6.831496e-01
12145	POU3F3	3.083412e-01
12146	POU3F4	1.181020e-01
12147	POU4F1	7.390925e-01
12148	POU4F2	4.576627e-01
12149	POU4F3	8.144416e-01
12150	POU5F1	7.061101e-01
12151	POU5F1B	4.170426e-01
12152	POU5F2	8.260823e-01
12153	POU6F1	6.131825e-01
12154	POU6F2	8.940530e-01
12155	PPA1	5.669459e-01
12156	PPA2	1
12157	PPAN	1
12158	PPAN-P2RY11	1.213873e-02
12159	PPAP2A	1
12160	PPAP2B	5.656660e-01
12161	PPAP2C	8.595938e-01
12162	PPAPDC1A	1
12163	PPAPDC1B	1
12164	PPAPDC2	1
12165	PPAPDC3	3.316620e-01
12166	PPARA	8.984436e-01
12167	PPARD	7.617286e-01
12168	PPARG	1
12169	PPARGC1A	7.472160e-01
12170	PPARGC1B	3.835814e-01
12171	PPAT	7.850867e-01
12172	PPBP	1
12173	PPCDC	5.387653e-01
12174	PPCS	7.273875e-01
12175	PPDPF	3.488230e-01
12176	PPEF1	3.653124e-01
12177	PPEF2	2.708151e-01
12178	PPFIA1	1
12179	PPFIA2	2.263001e-01
12180	PPFIA3	9.936374e-01
12181	PPFIA4	8.502452e-01
12182	PPFIBP1	1
12183	PPFIBP2	1
12184	PPHLN1	8.372312e-01
12185	PPIA	1
12186	PPIAL4E	1
12187	PPIAL4G	4.863716e-02
12188	PPIB	4.319027e-01
12189	PPIC	4.418476e-01
12190	PPID	7.660569e-01
12191	PPIE	7.038146e-01
12192	PPIF	1.674169e-01
12193	PPIG	3.607314e-01
12194	PPIH	5.125560e-01
12195	PPIL1	4.926976e-01
12196	PPIL2	7.730320e-01
12197	PPIL3	2.636930e-01
12198	PPIL4	8.650724e-01
12199	PPIL5	5.043295e-01
12200	PPIL6	1
12201	PPIP5K1	6.256858e-01
12202	PPIP5K2	1
12203	PPL	9.999360e-01
12204	PPM1A	1
12205	PPM1B	2.728165e-01
12206	PPM1D	1.189780e-01
12207	PPM1E	5.804183e-01
12208	PPM1F	9.116723e-01
12209	PPM1G	3.874054e-01
12210	PPM1H	1.410890e-01
12211	PPM1J	8.640497e-01
12212	PPM1K	6.899605e-01
12213	PPM1L	1
Done

Running MutSig 2:
Scatter job 135: processing genes 12124 - 12213
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POTEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
Cons ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
KS ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
POTEG   10000 perm   2 sec   (4312 perm/sec)   p_kst 4.970000e-02   p_cons 9.267000e-01   p_joint 1.250000e-01

Joint ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
Cons ci ratio: 7.656090e-03	ci left: 9.255063e-01	ci right 9.326683e-01	k: 18583	n:20000
KS ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
POTEG   20000 perm   8 sec   (2536 perm/sec)   p_kst 4.825000e-02   p_cons 9.291500e-01   p_joint 1.392000e-01

Joint ci ratio: 6.561045e-02	ci left: 1.028338e-01	ci right 1.098427e-01	k: 3189	n:30000
Cons ci ratio: 6.111115e-03	ci left: 9.291605e-01	ci right 9.348888e-01	k: 27962	n:30000
KS ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
POTEG   30000 perm   11 sec   (2826 perm/sec)   p_kst 4.940000e-02   p_cons 9.320667e-01   p_joint 1.063000e-01

Outputting figure to mutsig2_images.part000000000135/POTEG.18_1567_30000_0.0494_0.93207_0.1063.png
                gene_name: POTEG
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
POTEH
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
Cons ci ratio: 1.479875e-02	ci left: 8.686652e-01	ci right 8.817153e-01	k: 8753	n:10000
KS ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
POTEH   10000 perm   2 sec   (4471 perm/sec)   p_kst 2.768000e-01   p_cons 8.753000e-01   p_joint 4.782000e-01

Outputting figure to mutsig2_images.part000000000135/POTEH.17_1678_10000_0.2768_0.8753_0.4782.png
                gene_name: POTEH
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 4 percent done.
POSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
Cons ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
POSTN   10000 perm   3 sec   (3807 perm/sec)   p_kst 8.417000e-01   p_cons 4.498000e-01   p_joint 8.901000e-01

Outputting figure to mutsig2_images.part000000000135/POSTN.16_2603_10000_0.8417_0.4498_0.8901.png
                gene_name: POSTN
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 6 percent done.
POT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
Cons ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
POT1   10000 perm   2 sec   (4378 perm/sec)   p_kst 2.709000e-01   p_cons 5.521000e-01   p_joint 4.388000e-01

Outputting figure to mutsig2_images.part000000000135/POT1.16_1965_10000_0.2709_0.5521_0.4388.png
                gene_name: POT1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 8 percent done.
POTEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
POTEF   10000 perm   2 sec   (4096 perm/sec)   p_kst 3.510000e-02   p_cons 2.870000e-02   p_joint 3.470000e-02

Joint ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
Cons ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
KS ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
POTEF   20000 perm   5 sec   (3721 perm/sec)   p_kst 3.340000e-02   p_cons 2.860000e-02   p_joint 2.275000e-02

Joint ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
Cons ci ratio: 1.378857e-01	ci left: 2.442185e-02	ci right 2.807068e-02	k: 786	n:30000
KS ci ratio: 1.216872e-01	ci left: 3.139540e-02	ci right 3.549560e-02	k: 1002	n:30000
POTEF   30000 perm   8 sec   (3589 perm/sec)   p_kst 3.340000e-02   p_cons 2.620000e-02   p_joint 1.853333e-02

Joint ci ratio: 1.597755e-01	ci left: 1.363948e-02	ci right 1.603171e-02	k: 592	n:40000
Cons ci ratio: 1.193157e-01	ci left: 2.470519e-02	ci right 2.786409e-02	k: 1050	n:40000
KS ci ratio: 1.059735e-01	ci left: 3.131958e-02	ci right 3.484863e-02	k: 1322	n:40000
POTEF   40000 perm   11 sec   (3483 perm/sec)   p_kst 3.305000e-02   p_cons 2.625000e-02   p_joint 1.480000e-02

Joint ci ratio: 1.335458e-01	ci left: 1.580765e-02	ci right 1.808893e-02	k: 846	n:50000
Cons ci ratio: 1.074249e-01	ci left: 2.454481e-02	ci right 2.735059e-02	k: 1296	n:50000
KS ci ratio: 9.460112e-02	ci left: 3.162724e-02	ci right 3.478726e-02	k: 1659	n:50000
POTEF   50000 perm   15 sec   (3412 perm/sec)   p_kst 3.318000e-02   p_cons 2.592000e-02   p_joint 1.692000e-02

Joint ci ratio: 9.326594e-02	ci left: 2.726453e-02	ci right 2.994799e-02	k: 1715	n:60000
Cons ci ratio: 9.279383e-02	ci left: 2.754145e-02	ci right 3.023771e-02	k: 1732	n:60000
KS ci ratio: 8.547505e-02	ci left: 3.241723e-02	ci right 3.532808e-02	k: 2031	n:60000
POTEF   60000 perm   18 sec   (3348 perm/sec)   p_kst 3.385000e-02   p_cons 2.886667e-02   p_joint 2.858333e-02

Outputting figure to mutsig2_images.part000000000135/POTEF.14_3288_60000_0.03385_0.028867_0.028583.png
                gene_name: POTEF
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 10 percent done.
PPFIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
Cons ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
KS ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
PPFIA2   10000 perm   3 sec   (3883 perm/sec)   p_kst 2.172000e-01   p_cons 3.447000e-01   p_joint 2.921000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA2.13_3894_10000_0.2172_0.3447_0.2921.png
                gene_name: PPFIA2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 12 percent done.
POTEE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
Cons ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
POTEE   10000 perm   3 sec   (3773 perm/sec)   p_kst 1.011000e-01   p_cons 2.689000e-01   p_joint 1.358000e-01

Joint ci ratio: 7.547245e-02	ci left: 1.143465e-01	ci right 1.233646e-01	k: 2376	n:20000
Cons ci ratio: 4.415804e-02	ci left: 2.763667e-01	ci right 2.888965e-01	k: 5652	n:20000
KS ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
POTEE   20000 perm   6 sec   (3447 perm/sec)   p_kst 1.037500e-01   p_cons 2.826000e-01   p_joint 1.188000e-01

Outputting figure to mutsig2_images.part000000000135/POTEE.12_3288_20000_0.10375_0.2826_0.1188.png
                gene_name: POTEE
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
PPARGC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
Cons ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
KS ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
PPARGC1A   10000 perm   2 sec   (4230 perm/sec)   p_kst 2.699000e-01   p_cons 7.977000e-01   p_joint 4.075000e-01

Outputting figure to mutsig2_images.part000000000135/PPARGC1A.12_2449_10000_0.2699_0.7977_0.4075.png
                gene_name: PPARGC1A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 15 percent done.
POTEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.717994e-02	ci left: 6.660222e-01	ci right 6.844756e-01	k: 6753	n:10000
Cons ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
POTEA   10000 perm   2 sec   (4901 perm/sec)   p_kst 3.298000e-01   p_cons 9.624000e-01   p_joint 6.753000e-01

Outputting figure to mutsig2_images.part000000000135/POTEA.10_1545_10000_0.3298_0.9624_0.6753.png
                gene_name: POTEA
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 17 percent done.
PPARGC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.655201e-02	ci left: 4.051195e-01	ci right 4.245302e-01	k: 4148	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
PPARGC1B   10000 perm   2 sec   (4422 perm/sec)   p_kst 2.675000e-01   p_cons 7.152000e-01   p_joint 4.148000e-01

Outputting figure to mutsig2_images.part000000000135/PPARGC1B.9_3127_10000_0.2675_0.7152_0.4148.png
                gene_name: PPARGC1B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 19 percent done.
POU3F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
Cons ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
KS ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
POU3F4   10000 perm   2 sec   (5284 perm/sec)   p_kst 1.330000e-01   p_cons 6.145000e-01   p_joint 2.001000e-01

Joint ci ratio: 4.010198e-02	ci left: 3.167690e-01	ci right 3.297825e-01	k: 6465	n:20000
Cons ci ratio: 2.160270e-02	ci left: 6.153379e-01	ci right 6.288266e-01	k: 12442	n:20000
KS ci ratio: 7.054046e-02	ci left: 1.290118e-01	ci right 1.384949e-01	k: 2674	n:20000
POU3F4   20000 perm   4 sec   (4701 perm/sec)   p_kst 1.337000e-01   p_cons 6.221000e-01   p_joint 3.232500e-01

Outputting figure to mutsig2_images.part000000000135/POU3F4.8_1090_20000_0.1337_0.6221_0.32325.png
                gene_name: POU3F4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
PPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KS ci ratio: 2.667321e-02	ci left: 6.742815e-01	ci right 6.926115e-01	k: 6835	n:10000
PPEF2   10000 perm   2 sec   (5196 perm/sec)   p_kst 6.835000e-01   p_cons 8.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPEF2.8_2326_10000_0.6835_0.8879_1.png
                gene_name: PPEF2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
PPAN-P2RY11
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
Cons ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
KS ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
PPAN-P2RY11   10000 perm   2 sec   (5504 perm/sec)   p_kst 1.330000e-02   p_cons 4.678000e-01   p_joint 6.880000e-02

Joint ci ratio: 1.318068e-01	ci left: 3.955227e-02	ci right 4.518176e-02	k: 846	n:20000
Cons ci ratio: 2.937334e-02	ci left: 4.640618e-01	ci right 4.779466e-01	k: 9420	n:20000
KS ci ratio: 2.419888e-01	ci left: 1.138222e-02	ci right 1.456171e-02	k: 258	n:20000
PPAN-P2RY11   20000 perm   4 sec   (4868 perm/sec)   p_kst 1.290000e-02   p_cons 4.710000e-01   p_joint 4.230000e-02

Joint ci ratio: 1.034988e-01	ci left: 4.326677e-02	ci right 4.802173e-02	k: 1368	n:30000
Cons ci ratio: 2.359753e-02	ci left: 4.734326e-01	ci right 4.847714e-01	k: 14373	n:30000
KS ci ratio: 1.932223e-01	ci left: 1.222473e-02	ci right 1.487072e-02	k: 405	n:30000
PPAN-P2RY11   30000 perm   6 sec   (4626 perm/sec)   p_kst 1.350000e-02   p_cons 4.791000e-01   p_joint 4.560000e-02

Joint ci ratio: 8.130165e-02	ci left: 5.268762e-02	ci right 5.717727e-02	k: 2196	n:40000
Cons ci ratio: 2.040259e-02	ci left: 4.750181e-01	ci right 4.848348e-01	k: 19197	n:40000
KS ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
PPAN-P2RY11   40000 perm   9 sec   (4478 perm/sec)   p_kst 1.310000e-02   p_cons 4.799250e-01   p_joint 5.490000e-02

Joint ci ratio: 8.007232e-02	ci left: 4.390556e-02	ci right 4.758741e-02	k: 2286	n:50000
Cons ci ratio: 1.936234e-02	ci left: 4.460919e-01	ci right 4.548338e-01	k: 22523	n:50000
KS ci ratio: 1.526320e-01	ci left: 1.202548e-02	ci right 1.403165e-02	k: 650	n:50000
PPAN-P2RY11   50000 perm   11 sec   (4363 perm/sec)   p_kst 1.300000e-02   p_cons 4.504600e-01   p_joint 4.572000e-02

Joint ci ratio: 7.529885e-02	ci left: 4.158703e-02	ci right 4.485734e-02	k: 2592	n:60000
Cons ci ratio: 1.770019e-02	ci left: 4.457803e-01	ci right 4.537579e-01	k: 26986	n:60000
KS ci ratio: 1.388123e-01	ci left: 1.220548e-02	ci right 1.404206e-02	k: 786	n:60000
PPAN-P2RY11   60000 perm   14 sec   (4256 perm/sec)   p_kst 1.310000e-02   p_cons 4.497667e-01   p_joint 4.320000e-02

Joint ci ratio: 8.104117e-02	ci left: 3.103059e-02	ci right 3.366551e-02	k: 2263	n:70000
Cons ci ratio: 1.603136e-02	ci left: 4.569592e-01	ci right 4.643584e-01	k: 32246	n:70000
KS ci ratio: 1.289549e-01	ci left: 1.218779e-02	ci right 1.388150e-02	k: 911	n:70000
PPAN-P2RY11   70000 perm   17 sec   (4150 perm/sec)   p_kst 1.301429e-02   p_cons 4.606571e-01   p_joint 3.232857e-02

Joint ci ratio: 7.158879e-02	ci left: 3.483025e-02	ci right 3.742853e-02	k: 2889	n:80000
Cons ci ratio: 1.465261e-02	ci left: 4.687229e-01	ci right 4.756541e-01	k: 37775	n:80000
KS ci ratio: 1.211745e-01	ci left: 1.212950e-02	ci right 1.370611e-02	k: 1032	n:80000
PPAN-P2RY11   80000 perm   20 sec   (4066 perm/sec)   p_kst 1.290000e-02   p_cons 4.721875e-01   p_joint 3.611250e-02

Joint ci ratio: 6.738983e-02	ci left: 3.501095e-02	ci right 3.746350e-02	k: 3260	n:90000
Cons ci ratio: 1.382384e-02	ci left: 4.685895e-01	ci right 4.751234e-01	k: 42467	n:90000
KS ci ratio: 1.146512e-01	ci left: 1.208657e-02	ci right 1.356730e-02	k: 1153	n:90000
PPAN-P2RY11   90000 perm   23 sec   (3979 perm/sec)   p_kst 1.281111e-02   p_cons 4.718556e-01   p_joint 3.622222e-02

Joint ci ratio: 6.824451e-02	ci left: 3.084891e-02	ci right 3.303835e-02	k: 3193	n:100000
Cons ci ratio: 1.309989e-02	ci left: 4.693116e-01	ci right 4.755100e-01	k: 47241	n:100000
KS ci ratio: 1.111278e-01	ci left: 1.160658e-02	ci right 1.298193e-02	k: 1228	n:100000
PPAN-P2RY11   100000 perm   26 sec   (3904 perm/sec)   p_kst 1.228000e-02   p_cons 4.724100e-01   p_joint 3.193000e-02

Joint ci ratio: 7.307825e-02	ci left: 2.455856e-02	ci right 2.643021e-02	k: 2803	n:110000
Cons ci ratio: 1.249235e-02	ci left: 4.693733e-01	ci right 4.752827e-01	k: 51956	n:110000
KS ci ratio: 1.019783e-01	ci left: 1.257817e-02	ci right 1.393859e-02	k: 1457	n:110000
PPAN-P2RY11   110000 perm   29 sec   (3838 perm/sec)   p_kst 1.324545e-02   p_cons 4.723273e-01   p_joint 2.548182e-02

Joint ci ratio: 6.765257e-02	ci left: 2.629512e-02	ci right 2.814449e-02	k: 3265	n:120000
Cons ci ratio: 1.196959e-02	ci left: 4.691220e-01	ci right 4.747793e-01	k: 56634	n:120000
KS ci ratio: 9.765384e-02	ci left: 1.260254e-02	ci right 1.390448e-02	k: 1589	n:120000
PPAN-P2RY11   120000 perm   32 sec   (3760 perm/sec)   p_kst 1.324167e-02   p_cons 4.719500e-01   p_joint 2.720833e-02

Outputting figure to mutsig2_images.part000000000135/PPAN-P2RY11.6_1245_120000_0.013242_0.47195_0.027208.png
                gene_name: PPAN-P2RY11
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 25 percent done.
PPFIA4
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
Cons ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PPFIA4   10000 perm   2 sec   (5517 perm/sec)   p_kst 1   p_cons 4.256000e-01   p_joint 7.627000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA4.4_2174_10000_1_0.4256_0.7627.png
                gene_name: PPFIA4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 27 percent done.
PPIG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
Cons ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
PPIG   10000 perm   2 sec   (5169 perm/sec)   p_kst 7.871000e-01   p_cons 2.580000e-02   p_joint 1.142000e-01

Joint ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
Cons ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
KS ci ratio: 1.478748e-02	ci left: 7.726292e-01	ci right 7.841897e-01	k: 15569	n:20000
PPIG   20000 perm   4 sec   (4568 perm/sec)   p_kst 7.784500e-01   p_cons 2.640000e-02   p_joint 9.730000e-02

Joint ci ratio: 7.430191e-02	ci left: 8.173677e-02	ci right 8.807722e-02	k: 2546	n:30000
Cons ci ratio: 1.370829e-01	ci left: 2.471178e-02	ci right 2.838068e-02	k: 795	n:30000
KS ci ratio: 1.203481e-02	ci left: 7.748322e-01	ci right 7.842470e-01	k: 23387	n:30000
PPIG   30000 perm   7 sec   (4343 perm/sec)   p_kst 7.795667e-01   p_cons 2.650000e-02   p_joint 8.486667e-02

Joint ci ratio: 6.358333e-02	ci left: 8.400923e-02	ci right 8.955093e-02	k: 3470	n:40000
Cons ci ratio: 1.189674e-01	ci left: 2.485083e-02	ci right 2.801843e-02	k: 1056	n:40000
KS ci ratio: 1.045023e-02	ci left: 7.745489e-01	ci right 7.827106e-01	k: 31146	n:40000
PPIG   40000 perm   10 sec   (4203 perm/sec)   p_kst 7.786500e-01   p_cons 2.640000e-02   p_joint 8.675000e-02

Joint ci ratio: 5.512020e-02	ci left: 8.932235e-02	ci right 9.440515e-02	k: 4592	n:50000
Cons ci ratio: 1.064597e-01	ci left: 2.499281e-02	ci right 2.782254e-02	k: 1319	n:50000
KS ci ratio: 9.351576e-03	ci left: 7.748140e-01	ci right 7.821137e-01	k: 38924	n:50000
PPIG   50000 perm   12 sec   (4090 perm/sec)   p_kst 7.784800e-01   p_cons 2.638000e-02   p_joint 9.184000e-02

Joint ci ratio: 5.137996e-02	ci left: 8.615665e-02	ci right 9.071659e-02	k: 5305	n:60000
Cons ci ratio: 9.775612e-02	ci left: 2.482265e-02	ci right 2.739013e-02	k: 1565	n:60000
KS ci ratio: 8.583295e-03	ci left: 7.732455e-01	ci right 7.799277e-01	k: 46596	n:60000
PPIG   60000 perm   15 sec   (3990 perm/sec)   p_kst 7.766000e-01   p_cons 2.608333e-02   p_joint 8.841667e-02

Outputting figure to mutsig2_images.part000000000135/PPIG.7_2313_60000_0.7766_0.026083_0.088417.png
                gene_name: PPIG
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 29 percent done.
PPIP5K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
Cons ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
KS ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
PPIP5K2   10000 perm   2 sec   (4410 perm/sec)   p_kst 7.997000e-01   p_cons 3.151000e-01   p_joint 6.981000e-01

Outputting figure to mutsig2_images.part000000000135/PPIP5K2.7_3785_10000_0.7997_0.3151_0.6981.png
                gene_name: PPIP5K2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 31 percent done.
POTEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
POTEC   10000 perm   2 sec   (5265 perm/sec)   p_kst 3.391000e-01   p_cons 3.824000e-01   p_joint 4.629000e-01

Outputting figure to mutsig2_images.part000000000135/POTEC.6_1673_10000_0.3391_0.3824_0.4629.png
                gene_name: POTEC
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 33 percent done.
POU6F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
KS ci ratio: 7.079331e-03	ci left: 9.648873e-01	ci right 9.718363e-01	k: 9685	n:10000
POU6F2   10000 perm   2 sec   (5278 perm/sec)   p_kst 9.685000e-01   p_cons 5.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU6F2.6_2116_10000_0.9685_0.5355_1.png
                gene_name: POU6F2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
PPEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
PPEF1   10000 perm   2 sec   (5014 perm/sec)   p_kst 7.962000e-01   p_cons 3.139000e-01   p_joint 6.294000e-01

Outputting figure to mutsig2_images.part000000000135/PPEF1.6_2026_10000_0.7962_0.3139_0.6294.png
                gene_name: PPEF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 37 percent done.
PPFIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
Cons ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
KS ci ratio: 2.060037e-02	ci left: 7.753971e-01	ci right 7.916375e-01	k: 7836	n:10000
PPFIA1   10000 perm   2 sec   (4349 perm/sec)   p_kst 7.836000e-01   p_cons 3.706000e-01   p_joint 9.182000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA1.6_3721_10000_0.7836_0.3706_0.9182.png
                gene_name: PPFIA1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 38 percent done.
PPFIBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
Cons ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
KS ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
PPFIBP1   10000 perm   2 sec   (4499 perm/sec)   p_kst 6.012000e-01   p_cons 6.232000e-01   p_joint 7.806000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIBP1.6_3172_10000_0.6012_0.6232_0.7806.png
                gene_name: PPFIBP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 40 percent done.
PPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
PPL   10000 perm   2 sec   (4220 perm/sec)   p_kst 9.219000e-01   p_cons 3.960000e-02   p_joint 2.275000e-01

Joint ci ratio: 5.868446e-02	ci left: 1.770200e-01	ci right 1.877725e-01	k: 3647	n:20000
Cons ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
KS ci ratio: 7.968302e-03	ci left: 9.199338e-01	ci right 9.273425e-01	k: 18474	n:20000
PPL   20000 perm   5 sec   (3814 perm/sec)   p_kst 9.237000e-01   p_cons 4.435000e-02   p_joint 1.823500e-01

Joint ci ratio: 3.803975e-02	ci left: 2.564345e-01	ci right 2.664118e-01	k: 7842	n:30000
Cons ci ratio: 1.047886e-01	ci left: 4.222667e-02	ci right 4.692870e-02	k: 1336	n:30000
KS ci ratio: 6.485590e-03	ci left: 9.210791e-01	ci right 9.271051e-01	k: 27724	n:30000
PPL   30000 perm   8 sec   (3642 perm/sec)   p_kst 9.241333e-01   p_cons 4.453333e-02   p_joint 2.614000e-01

Joint ci ratio: 3.582162e-02	ci left: 2.262557e-01	ci right 2.345334e-01	k: 9215	n:40000
Cons ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
KS ci ratio: 5.631807e-03	ci left: 9.211058e-01	ci right 9.263325e-01	k: 36950	n:40000
PPL   40000 perm   11 sec   (3535 perm/sec)   p_kst 9.237500e-01   p_cons 4.350000e-02   p_joint 2.303750e-01

Outputting figure to mutsig2_images.part000000000135/PPL.6_5359_40000_0.92375_0.0435_0.23037.png
                gene_name: PPL
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 42 percent done.
PPM1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
Cons ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
KS ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
PPM1D   10000 perm   2 sec   (4799 perm/sec)   p_kst 1.530000e-02   p_cons 5.974000e-01   p_joint 4.290000e-02

Joint ci ratio: 1.111972e-01	ci left: 5.523815e-02	ci right 6.179094e-02	k: 1169	n:20000
Cons ci ratio: 2.271113e-02	ci left: 5.914668e-01	ci right 6.051046e-01	k: 11966	n:20000
KS ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
PPM1D   20000 perm   5 sec   (4350 perm/sec)   p_kst 1.605000e-02   p_cons 5.983000e-01   p_joint 5.845000e-02

Joint ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
Cons ci ratio: 1.845274e-02	ci left: 5.950984e-01	ci right 6.062154e-01	k: 18020	n:30000
KS ci ratio: 1.733099e-01	ci left: 1.531212e-02	ci right 1.824920e-02	k: 502	n:30000
PPM1D   30000 perm   7 sec   (4165 perm/sec)   p_kst 1.673333e-02   p_cons 6.006667e-01   p_joint 3.526667e-02

Joint ci ratio: 1.145361e-01	ci left: 2.681823e-02	ci right 3.010070e-02	k: 1137	n:40000
Cons ci ratio: 1.600123e-02	ci left: 5.952296e-01	ci right 6.048559e-01	k: 24002	n:40000
KS ci ratio: 1.530985e-01	ci left: 1.488932e-02	ci right 1.738165e-02	k: 644	n:40000
PPM1D   40000 perm   10 sec   (4039 perm/sec)   p_kst 1.610000e-02   p_cons 6.000500e-01   p_joint 2.842500e-02

Joint ci ratio: 9.035222e-02	ci left: 3.463843e-02	ci right 3.793569e-02	k: 1813	n:50000
Cons ci ratio: 1.430874e-02	ci left: 5.958505e-01	ci right 6.044579e-01	k: 30008	n:50000
KS ci ratio: 1.361018e-01	ci left: 1.520824e-02	ci right 1.744843e-02	k: 815	n:50000
PPM1D   50000 perm   13 sec   (3939 perm/sec)   p_kst 1.630000e-02   p_cons 6.001600e-01   p_joint 3.626000e-02

Joint ci ratio: 8.319251e-02	ci left: 3.419688e-02	ci right 3.718158e-02	k: 2140	n:60000
Cons ci ratio: 1.333624e-02	ci left: 5.862022e-01	ci right 5.940891e-01	k: 35409	n:60000
KS ci ratio: 1.248411e-01	ci left: 1.515651e-02	ci right 1.719068e-02	k: 969	n:60000
PPM1D   60000 perm   16 sec   (3861 perm/sec)   p_kst 1.615000e-02   p_cons 5.901500e-01   p_joint 3.566667e-02

Joint ci ratio: 7.627766e-02	ci left: 3.496862e-02	ci right 3.775570e-02	k: 2544	n:70000
Cons ci ratio: 1.209504e-02	ci left: 5.964455e-01	ci right 6.037177e-01	k: 42006	n:70000
KS ci ratio: 1.167749e-01	ci left: 1.491694e-02	ci right 1.678065e-02	k: 1108	n:70000
PPM1D   70000 perm   18 sec   (3786 perm/sec)   p_kst 1.582857e-02   p_cons 6.000857e-01   p_joint 3.634286e-02

Joint ci ratio: 6.610855e-02	ci left: 4.070651e-02	ci right 4.350182e-02	k: 3367	n:80000
Cons ci ratio: 1.133036e-02	ci left: 5.959821e-01	ci right 6.027857e-01	k: 47951	n:80000
KS ci ratio: 1.094715e-01	ci left: 1.491074e-02	ci right 1.664964e-02	k: 1261	n:80000
PPM1D   80000 perm   22 sec   (3721 perm/sec)   p_kst 1.576250e-02   p_cons 5.993875e-01   p_joint 4.208750e-02

Joint ci ratio: 6.042154e-02	ci left: 4.332623e-02	ci right 4.603655e-02	k: 4020	n:90000
Cons ci ratio: 1.089645e-02	ci left: 5.866003e-01	ci right 5.930383e-01	k: 53084	n:90000
KS ci ratio: 1.036848e-01	ci left: 1.482213e-02	ci right 1.645375e-02	k: 1406	n:90000
PPM1D   90000 perm   25 sec   (3656 perm/sec)   p_kst 1.562222e-02   p_cons 5.898222e-01   p_joint 4.466667e-02

Joint ci ratio: 5.806477e-02	ci left: 4.232289e-02	ci right 4.486367e-02	k: 4358	n:100000
Cons ci ratio: 1.034161e-02	ci left: 5.865636e-01	ci right 5.926712e-01	k: 58962	n:100000
KS ci ratio: 9.889021e-02	ci left: 1.470442e-02	ci right 1.624387e-02	k: 1546	n:100000
PPM1D   100000 perm   28 sec   (3593 perm/sec)   p_kst 1.546000e-02   p_cons 5.896200e-01   p_joint 4.358000e-02

Outputting figure to mutsig2_images.part000000000135/PPM1D.6_1842_100000_0.01546_0.58962_0.04358.png
                gene_name: PPM1D
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 44 percent done.
PPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
KS ci ratio: 2.291532e-02	ci left: 7.366399e-01	ci right 7.538170e-01	k: 7453	n:10000
PPAT   10000 perm   2 sec   (5879 perm/sec)   p_kst 7.453000e-01   p_cons 9.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPAT.5_1598_10000_0.7453_0.9675_1.png
                gene_name: PPAT
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PPM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
Cons ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
KS ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
PPM1L   10000 perm   2 sec   (5691 perm/sec)   p_kst 7.087000e-01   p_cons 9.870000e-02   p_joint 5.995000e-01

Joint ci ratio: 1.652816e-02	ci left: 7.315444e-01	ci right 7.437865e-01	k: 14754	n:20000
Cons ci ratio: 8.418691e-02	ci left: 9.366788e-02	ci right 1.019495e-01	k: 1955	n:20000
KS ci ratio: 1.766081e-02	ci left: 7.049140e-01	ci right 7.175246e-01	k: 14225	n:20000
PPM1L   20000 perm   4 sec   (5127 perm/sec)   p_kst 7.112500e-01   p_cons 9.775000e-02   p_joint 7.377000e-01

Outputting figure to mutsig2_images.part000000000135/PPM1L.5_1099_20000_0.71125_0.09775_0.7377.png
                gene_name: PPM1L
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 48 percent done.
POU2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
Cons ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
POU2F1   10000 perm   2 sec   (5257 perm/sec)   p_kst 1.774000e-01   p_cons 9.898000e-01   p_joint 2.754000e-01

Outputting figure to mutsig2_images.part000000000135/POU2F1.4_2292_10000_0.1774_0.9898_0.2754.png
                gene_name: POU2F1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 50 percent done.
PPM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
PPM1B   10000 perm   2 sec   (5322 perm/sec)   p_kst 8.408000e-01   p_cons 9.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPM1B.4_1527_10000_0.8408_0.9593_1.png
                gene_name: PPM1B
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
PPM1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
PPM1E   10000 perm   2 sec   (5259 perm/sec)   p_kst 6.740000e-02   p_cons 3.140000e-02   p_joint 9.320000e-02

Joint ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
PPM1E   20000 perm   4 sec   (4697 perm/sec)   p_kst 6.795000e-02   p_cons 3.045000e-02   p_joint 3.300000e-02

Joint ci ratio: 9.864970e-02	ci left: 4.752822e-02	ci right 5.249272e-02	k: 1499	n:30000
Cons ci ratio: 1.314246e-01	ci left: 2.690430e-02	ci right 3.072102e-02	k: 863	n:30000
KS ci ratio: 8.391874e-02	ci left: 6.494777e-02	ci right 7.066961e-02	k: 2033	n:30000
PPM1E   30000 perm   7 sec   (4476 perm/sec)   p_kst 6.776667e-02   p_cons 2.876667e-02   p_joint 4.996667e-02

Joint ci ratio: 1.207994e-01	ci left: 2.409850e-02	ci right 2.722087e-02	k: 1025	n:40000
Cons ci ratio: 1.146398e-01	ci left: 2.676963e-02	ci right 3.004931e-02	k: 1135	n:40000
KS ci ratio: 7.261859e-02	ci left: 6.542897e-02	ci right 7.038398e-02	k: 2715	n:40000
PPM1E   40000 perm   9 sec   (4317 perm/sec)   p_kst 6.787500e-02   p_cons 2.837500e-02   p_joint 2.562500e-02

Joint ci ratio: 8.412303e-02	ci left: 3.986648e-02	ci right 4.338699e-02	k: 2080	n:50000
Cons ci ratio: 1.014036e-01	ci left: 2.754653e-02	ci right 3.050848e-02	k: 1450	n:50000
KS ci ratio: 6.401646e-02	ci left: 6.752245e-02	ci right 7.200766e-02	k: 3487	n:50000
PPM1E   50000 perm   12 sec   (4209 perm/sec)   p_kst 6.974000e-02   p_cons 2.900000e-02   p_joint 4.160000e-02

Joint ci ratio: 8.859127e-02	ci left: 3.019832e-02	ci right 3.301389e-02	k: 1895	n:60000
Cons ci ratio: 9.534521e-02	ci left: 2.609207e-02	ci right 2.872058e-02	k: 1643	n:60000
KS ci ratio: 5.866213e-02	ci left: 6.723112e-02	ci right 7.131066e-02	k: 4155	n:60000
PPM1E   60000 perm   15 sec   (4113 perm/sec)   p_kst 6.925000e-02   p_cons 2.738333e-02   p_joint 3.158333e-02

Outputting figure to mutsig2_images.part000000000135/PPM1E.4_2296_60000_0.06925_0.027383_0.031583.png
                gene_name: PPM1E
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 54 percent done.
PPM1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 7.573360e-03	ci left: 9.602659e-01	ci right 9.676606e-01	k: 9641	n:10000
PPM1G   10000 perm   2 sec   (5239 perm/sec)   p_kst 9.641000e-01   p_cons 9.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPM1G.4_1681_10000_0.9641_0.9508_1.png
                gene_name: PPM1G
               theta_stop: 0.0089 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
PPM1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
Cons ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
KS ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
PPM1H   10000 perm   2 sec   (6395 perm/sec)   p_kst 5.096000e-01   p_cons 6.910000e-02   p_joint 2.734000e-01

Joint ci ratio: 4.792015e-02	ci left: 2.446553e-01	ci right 2.567173e-01	k: 5013	n:20000
Cons ci ratio: 1.005299e-01	ci left: 6.708754e-02	ci right 7.423789e-02	k: 1412	n:20000
KS ci ratio: 2.771096e-02	ci left: 4.931459e-01	ci right 5.070541e-01	k: 10002	n:20000
PPM1H   20000 perm   4 sec   (5576 perm/sec)   p_kst 5.001000e-01   p_cons 7.060000e-02   p_joint 2.506500e-01

Joint ci ratio: 4.679498e-02	ci left: 1.851118e-01	ci right 1.940150e-01	k: 5686	n:30000
Cons ci ratio: 8.161774e-02	ci left: 6.847850e-02	ci right 7.433817e-02	k: 2141	n:30000
KS ci ratio: 2.267479e-02	ci left: 4.933591e-01	ci right 5.047078e-01	k: 14971	n:30000
PPM1H   30000 perm   6 sec   (5280 perm/sec)   p_kst 4.990333e-01   p_cons 7.136667e-02   p_joint 1.895333e-01

Outputting figure to mutsig2_images.part000000000135/PPM1H.4_1585_30000_0.49903_0.071367_0.18953.png
                gene_name: PPM1H
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
POPDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
Cons ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
KS ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
POPDC3   10000 perm   2 sec   (6362 perm/sec)   p_kst 3.864000e-01   p_cons 6.962000e-01   p_joint 4.697000e-01

Outputting figure to mutsig2_images.part000000000135/POPDC3.3_888_10000_0.3864_0.6962_0.4697.png
                gene_name: POPDC3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
PORCN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
KS ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
PORCN   10000 perm   2 sec   (6242 perm/sec)   p_kst 5.204000e-01   p_cons 9.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PORCN.2_1442_10000_0.5204_0.9321_1.png
                gene_name: PORCN
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
POU1F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
POU1F1   10000 perm   1 sec   (6891 perm/sec)   p_kst 1   p_cons 1.195000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
POU1F1   20000 perm   3 sec   (5964 perm/sec)   p_kst 1   p_cons 1.232000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU1F1.3_978_20000_1_0.1232_1.png
                gene_name: POU1F1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
POU3F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
Cons ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
KS ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
POU3F3   10000 perm   2 sec   (6007 perm/sec)   p_kst 1.328000e-01   p_cons 1.009000e-01   p_joint 1.367000e-01

Joint ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
Cons ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
KS ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
POU3F3   20000 perm   4 sec   (5286 perm/sec)   p_kst 1.295500e-01   p_cons 1.052000e-01   p_joint 7.000000e-02

Joint ci ratio: 9.082027e-02	ci left: 5.580527e-02	ci right 6.114731e-02	k: 1753	n:30000
Cons ci ratio: 6.826270e-02	ci left: 9.564266e-02	ci right 1.024352e-01	k: 2970	n:30000
KS ci ratio: 5.846138e-02	ci left: 1.265100e-01	ci right 1.341618e-01	k: 3909	n:30000
POU3F3   30000 perm   6 sec   (5018 perm/sec)   p_kst 1.303000e-01   p_cons 9.900000e-02   p_joint 5.843333e-02

Outputting figure to mutsig2_images.part000000000135/POU3F3.3_1506_30000_0.1303_0.099_0.058433.png
                gene_name: POU3F3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 65 percent done.
POU4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
POU4F2   10000 perm   2 sec   (6282 perm/sec)   p_kst 5.480000e-02   p_cons 6.198000e-01   p_joint 1.523000e-01

Joint ci ratio: 9.958521e-02	ci left: 6.830848e-02	ci right 7.551658e-02	k: 1437	n:20000
Cons ci ratio: 2.168318e-02	ci left: 6.135821e-01	ci right 6.270829e-01	k: 12407	n:20000
KS ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
POU4F2   20000 perm   4 sec   (5467 perm/sec)   p_kst 5.300000e-02   p_cons 6.203500e-01   p_joint 7.185000e-02

Joint ci ratio: 7.230355e-02	ci left: 8.599784e-02	ci right 9.248197e-02	k: 2676	n:30000
Cons ci ratio: 1.765008e-02	ci left: 6.162843e-01	ci right 6.272921e-01	k: 18654	n:30000
KS ci ratio: 9.547558e-02	ci left: 5.065448e-02	ci right 5.576582e-02	k: 1595	n:30000
POU4F2   30000 perm   6 sec   (5166 perm/sec)   p_kst 5.316667e-02   p_cons 6.218000e-01   p_joint 8.920000e-02

Outputting figure to mutsig2_images.part000000000135/POU4F2.3_1238_30000_0.053167_0.6218_0.0892.png
                gene_name: POU4F2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 67 percent done.
PPAPDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
PPAPDC3   10000 perm   2 sec   (6267 perm/sec)   p_kst 4.539000e-01   p_cons 1.129000e-01   p_joint 4.585000e-01

Joint ci ratio: 3.430110e-02	ci left: 3.882157e-01	ci right 4.018149e-01	k: 7900	n:20000
Cons ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
KS ci ratio: 3.038279e-02	ci left: 4.472817e-01	ci right 4.611316e-01	k: 9084	n:20000
PPAPDC3   20000 perm   4 sec   (5445 perm/sec)   p_kst 4.542000e-01   p_cons 8.925000e-02   p_joint 3.950000e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC3.3_824_20000_0.4542_0.08925_0.395.png
                gene_name: PPAPDC3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 69 percent done.
PPARG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
KS ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
PPARG   10000 perm   2 sec   (5812 perm/sec)   p_kst 8.516000e-01   p_cons 6.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPARG.3_1546_10000_0.8516_0.6219_1.png
                gene_name: PPARG
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
PPIAL4G
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
KS ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
PPIAL4G   10000 perm   1 sec   (7325 perm/sec)   p_kst 6.908000e-01   p_cons 9.348000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIAL4G.2_499_10000_0.6908_0.9348_1.png
                gene_name: PPIAL4G
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
POPDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
Cons ci ratio: 2.906018e-02	ci left: 6.358318e-01	ci right 6.546835e-01	k: 6453	n:10000
KS ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
POPDC2   10000 perm   2 sec   (6385 perm/sec)   p_kst 8.980000e-02   p_cons 6.453000e-01   p_joint 4.337000e-01

Joint ci ratio: 2.667464e-02	ci left: 5.121982e-01	ci right 5.260962e-01	k: 10383	n:20000
Cons ci ratio: 2.056974e-02	ci left: 6.381720e-01	ci right 6.514859e-01	k: 12897	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
POPDC2   20000 perm   4 sec   (5596 perm/sec)   p_kst 9.035000e-02   p_cons 6.448500e-01   p_joint 5.191500e-01

Outputting figure to mutsig2_images.part000000000135/POPDC2.2_1111_20000_0.09035_0.64485_0.51915.png
                gene_name: POPDC2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 75 percent done.
POU2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 4.759331e-02	ci left: 3.944612e-01	ci right 4.137947e-01	k: 4041	n:10000
POU2F2   10000 perm   2 sec   (6112 perm/sec)   p_kst 4.041000e-01   p_cons 8.808000e-01   p_joint 5.949000e-01

Outputting figure to mutsig2_images.part000000000135/POU2F2.2_1448_10000_0.4041_0.8808_0.5949.png
                gene_name: POU2F2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 77 percent done.
POU2F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
Cons ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
KS ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
POU2F3   10000 perm   2 sec   (6310 perm/sec)   p_kst 2.700000e-02   p_cons 6.456000e-01   p_joint 8.370000e-02

Joint ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
Cons ci ratio: 2.116165e-02	ci left: 6.250216e-01	ci right 6.384401e-01	k: 12635	n:20000
KS ci ratio: 1.630116e-01	ci left: 2.580547e-02	ci right 3.043309e-02	k: 561	n:20000
POU2F3   20000 perm   4 sec   (5499 perm/sec)   p_kst 2.805000e-02   p_cons 6.317500e-01   p_joint 2.785000e-02

Joint ci ratio: 7.708036e-02	ci left: 7.629930e-02	ci right 8.244912e-02	k: 2380	n:30000
Cons ci ratio: 1.666785e-02	ci left: 6.428993e-01	ci right 6.537386e-01	k: 19450	n:30000
KS ci ratio: 1.327757e-01	ci left: 2.635586e-02	ci right 3.013624e-02	k: 846	n:30000
POU2F3   30000 perm   6 sec   (5180 perm/sec)   p_kst 2.820000e-02   p_cons 6.483333e-01   p_joint 7.933333e-02

Joint ci ratio: 2.440480e-02	ci left: 3.872861e-01	ci right 3.968796e-01	k: 15683	n:40000
Cons ci ratio: 1.444385e-02	ci left: 6.433467e-01	ci right 6.527318e-01	k: 25922	n:40000
KS ci ratio: 1.135640e-01	ci left: 2.728005e-02	ci right 3.058881e-02	k: 1156	n:40000
POU2F3   40000 perm   8 sec   (4991 perm/sec)   p_kst 2.890000e-02   p_cons 6.480500e-01   p_joint 3.920750e-01

Joint ci ratio: 1.386676e-02	ci left: 6.108385e-01	ci right 6.193881e-01	k: 30756	n:50000
Cons ci ratio: 1.294254e-02	ci left: 6.430132e-01	ci right 6.514097e-01	k: 32361	n:50000
KS ci ratio: 1.007618e-01	ci left: 2.789769e-02	ci right 3.087729e-02	k: 1468	n:50000
POU2F3   50000 perm   10 sec   (4841 perm/sec)   p_kst 2.936000e-02   p_cons 6.472200e-01   p_joint 6.151200e-01

Joint ci ratio: 2.430626e-03	ci left: 9.762475e-01	ci right 9.786394e-01	k: 58648	n:60000
Cons ci ratio: 1.184174e-02	ci left: 6.423421e-01	ci right 6.500105e-01	k: 38771	n:60000
KS ci ratio: 9.184315e-02	ci left: 2.811169e-02	ci right 3.083407e-02	k: 1767	n:60000
POU2F3   60000 perm   13 sec   (4705 perm/sec)   p_kst 2.945000e-02   p_cons 6.461833e-01   p_joint 9.774667e-01

Outputting figure to mutsig2_images.part000000000135/POU2F3.2_1363_60000_0.02945_0.64618_0.97747.png
                gene_name: POU2F3
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 79 percent done.
POU5F1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
POU5F1B   10000 perm   2 sec   (6391 perm/sec)   p_kst 9.133000e-01   p_cons 3.015000e-01   p_joint 7.022000e-01

Outputting figure to mutsig2_images.part000000000135/POU5F1B.2_1084_10000_0.9133_0.3015_0.7022.png
                gene_name: POU5F1B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 81 percent done.
PPAP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.923333e-02	ci left: 4.896515e-01	ci right 5.093488e-01	k: 4995	n:10000
Cons ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
KS ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
PPAP2B   10000 perm   2 sec   (6589 perm/sec)   p_kst 1.632000e-01   p_cons 1.381000e-01   p_joint 4.995000e-01

Outputting figure to mutsig2_images.part000000000135/PPAP2B.2_960_10000_0.1632_0.1381_0.4995.png
                gene_name: PPAP2B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 83 percent done.
PPAPDC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
PPAPDC1A   10000 perm   2 sec   (6624 perm/sec)   p_kst 1.868000e-01   p_cons 2.296000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC1A.2_844_10000_0.1868_0.2296_0.3482.png
                gene_name: PPAPDC1A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 85 percent done.
PPARD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
KS ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
PPARD   10000 perm   2 sec   (6243 perm/sec)   p_kst 9.581000e-01   p_cons 7.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPARD.2_1375_10000_0.9581_0.7933_1.png
                gene_name: PPARD
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PPFIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.766457e-02	ci left: 6.581687e-01	ci right 6.767337e-01	k: 6675	n:10000
Cons ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
KS ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
PPFIA3   10000 perm   2 sec   (5220 perm/sec)   p_kst 5.987000e-01   p_cons 5.526000e-01   p_joint 6.675000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA3.2_3697_10000_0.5987_0.5526_0.6675.png
                gene_name: PPFIA3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 88 percent done.
PPIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 1.564741e-02	ci left: 8.556968e-01	ci right 8.692912e-01	k: 8626	n:10000
PPIB   10000 perm   1 sec   (7118 perm/sec)   p_kst 8.626000e-01   p_cons 7.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIB.2_671_10000_0.8626_0.7005_1.png
                gene_name: PPIB
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PPIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
PPIF   10000 perm   1 sec   (6853 perm/sec)   p_kst 3.454000e-01   p_cons 1.217000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
KS ci ratio: 3.781152e-02	ci left: 3.428891e-01	ci right 3.561547e-01	k: 6990	n:20000
PPIF   20000 perm   3 sec   (5914 perm/sec)   p_kst 3.495000e-01   p_cons 1.195500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIF.2_648_20000_0.3495_0.11955_1.png
                gene_name: PPIF
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
PPIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
PPIL2   10000 perm   2 sec   (6113 perm/sec)   p_kst 3.440000e-01   p_cons 4.856000e-01   p_joint 2.371000e-01

Outputting figure to mutsig2_images.part000000000135/PPIL2.2_1672_10000_0.344_0.4856_0.2371.png
                gene_name: PPIL2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 94 percent done.
PPIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
Cons ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
KS ci ratio: 2.072176e-02	ci left: 7.733708e-01	ci right 7.896649e-01	k: 7816	n:10000
PPIL3   10000 perm   1 sec   (7166 perm/sec)   p_kst 7.816000e-01   p_cons 2.128000e-01   p_joint 4.784000e-01

Outputting figure to mutsig2_images.part000000000135/PPIL3.2_620_10000_0.7816_0.2128_0.4784.png
                gene_name: PPIL3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 96 percent done.
PPIL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
Cons ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
KS ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
PPIL5   10000 perm   2 sec   (6313 perm/sec)   p_kst 5.998000e-01   p_cons 7.970000e-01   p_joint 9.098000e-01

Outputting figure to mutsig2_images.part000000000135/PPIL5.2_1261_10000_0.5998_0.797_0.9098.png
                gene_name: PPIL5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
PPIP5K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
Cons ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
KS ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
PPIP5K1   10000 perm   2 sec   (4692 perm/sec)   p_kst 3.193000e-01   p_cons 8.368000e-01   p_joint 3.508000e-01

Outputting figure to mutsig2_images.part000000000135/PPIP5K1.2_4542_10000_0.3193_0.8368_0.3508.png
                gene_name: PPIP5K1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000135
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 135 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422330: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000136> was used as the working directory.
Started at Wed Oct 24 18:03:57 2012
Results reported at Wed Oct 24 19:03:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000136.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000136.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 136  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000136.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3547.43 sec.
    Max Memory :      5912 MB
    Max Swap   :      8243 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
136
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 136
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 136: processing genes 12214 - 12304
Calculating significance of each gene.
Using projection method.
12214	PPM1M	5.621792e-01
12215	PPM1N	1
12216	PPME1	1.378761e-01
12217	PPOX	5.841085e-01
In gene PPP1CA the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 1053    n = 1	mu =   3.68e-07
12218	PPP1CA	4.881433e-01
12219	PPP1CB	8.583835e-01
12220	PPP1CC	8.445875e-01
12221	PPP1R10	1
12222	PPP1R11	1
12223	PPP1R12A	9.693817e-01
12224	PPP1R12B	9.941193e-01
12225	PPP1R12C	1
12226	PPP1R13B	9.834929e-01
12227	PPP1R13L	9.283072e-01
12228	PPP1R14A	1
12229	PPP1R14B	1
12230	PPP1R14C	1
12231	PPP1R14D	1
12232	PPP1R15A	9.663197e-01
12233	PPP1R15B	2.415298e-01
12234	PPP1R16A	1
12235	PPP1R16B	7.480937e-01
12236	PPP1R1A	2.124148e-01
12237	PPP1R1B	4.673569e-01
12238	PPP1R1C	1
12239	PPP1R2	1
12240	PPP1R3A	9.644007e-01
12241	PPP1R3B	7.128742e-01
12242	PPP1R3C	7.663593e-01
12243	PPP1R3D	4.127100e-02
12244	PPP1R3F	8.824501e-01
12245	PPP1R7	5.280691e-01
12246	PPP1R8	7.519011e-01
12247	PPP1R9A	9.660500e-01
12248	PPP1R9B	1
12249	PPP2CA	7.513572e-01
12250	PPP2CB	3.100798e-01
12251	PPP2R1A	6.701829e-01
12252	PPP2R1B	1
12253	PPP2R2A	2.798979e-01
12254	PPP2R2B	1.290079e-01
12255	PPP2R2C	8.562219e-01
12256	PPP2R2D	8.247834e-01
12257	PPP2R3A	9.989939e-01
12258	PPP2R3B	7.738385e-01
12259	PPP2R3C	1
12260	PPP2R4	1
12261	PPP2R5A	2.227934e-01
12262	PPP2R5B	6.546494e-01
12263	PPP2R5C	9.323365e-01
12264	PPP2R5D	5.517915e-01
12265	PPP2R5E	2.107182e-01
12266	PPP3CA	5.045035e-02
12267	PPP3CB	8.851598e-01
12268	PPP3CC	7.317935e-01
12269	PPP3R1	7.295034e-02
12270	PPP3R2	1.972926e-01
12271	PPP4C	1
12272	PPP4R1	9.741240e-01
12273	PPP4R2	8.774980e-01
12274	PPP4R4	9.735736e-01
12275	PPP5C	8.953197e-01
12276	PPP6C	1
12277	PPPDE1	3.646098e-01
12278	PPPDE2	1
12279	PPRC1	7.252736e-01
12280	PPT1	8.165937e-01
12281	PPT2	5.483473e-03
12282	PPTC7	7.177316e-01
12283	PPWD1	8.113488e-01
12284	PPY	2.958667e-01
12285	PPYR1	1
12286	PQBP1	1
12287	PQLC1	7.303954e-01
12288	PQLC2	1
12289	PQLC3	1
12290	PRAC	1
12291	PRAF2	1
12292	PRAM1	1
12293	PRAME	7.586576e-01
12294	PRAMEF1	7.591828e-03
12295	PRAMEF10	1
12296	PRAMEF11	8.173972e-01
12297	PRAMEF12	1
12298	PRAMEF13	1
12299	PRAMEF14	1
12300	PRAMEF16	1
12301	PRAMEF17	3.923123e-01
12302	PRAMEF18	2.428216e-01
12303	PRAMEF19	1
12304	PRAMEF2	3.469534e-03
Done

Running MutSig 2:
Scatter job 136: processing genes 12214 - 12304
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PPP1R3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
Cons ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
PPP1R3A   10000 perm   2 sec   (4601 perm/sec)   p_kst 3.304000e-01   p_cons 7.802000e-01   p_joint 4.447000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3A.12_3385_10000_0.3304_0.7802_0.4447.png
                gene_name: PPP1R3A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
PRAMEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
PRAMEF2   10000 perm   2 sec   (5626 perm/sec)   p_kst 6.182000e-01   p_cons 6.940000e-02   p_joint 2.672000e-01

Joint ci ratio: 4.030447e-02	ci left: 3.145809e-01	ci right 3.275712e-01	k: 6421	n:20000
Cons ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
KS ci ratio: 2.179610e-02	ci left: 6.111241e-01	ci right 6.246416e-01	k: 12358	n:20000
PRAMEF2   20000 perm   4 sec   (5134 perm/sec)   p_kst 6.179000e-01   p_cons 7.025000e-02   p_joint 3.210500e-01

Joint ci ratio: 3.522122e-02	ci left: 2.870575e-01	ci right 2.973828e-01	k: 8766	n:30000
Cons ci ratio: 8.251311e-02	ci left: 6.707248e-02	ci right 7.287780e-02	k: 2098	n:30000
KS ci ratio: 1.773022e-02	ci left: 6.141451e-01	ci right 6.251650e-01	k: 18590	n:30000
PRAMEF2   30000 perm   6 sec   (4854 perm/sec)   p_kst 6.196667e-01   p_cons 6.993333e-02   p_joint 2.922000e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF2.10_1437_30000_0.61967_0.069933_0.2922.png
                gene_name: PRAMEF2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 4 percent done.
PPP1R9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
PPP1R9A   10000 perm   2 sec   (4778 perm/sec)   p_kst 4.260000e-02   p_cons 5.981000e-01   p_joint 1.093000e-01

Joint ci ratio: 8.357263e-02	ci left: 9.494340e-02	ci right 1.032736e-01	k: 1981	n:20000
Cons ci ratio: 2.276787e-02	ci left: 5.902637e-01	ci right 6.039081e-01	k: 11942	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
PPP1R9A   20000 perm   5 sec   (4432 perm/sec)   p_kst 4.190000e-02   p_cons 5.971000e-01   p_joint 9.905000e-02

Joint ci ratio: 7.621448e-02	ci left: 7.793665e-02	ci right 8.414477e-02	k: 2430	n:30000
Cons ci ratio: 1.857993e-02	ci left: 5.917912e-01	ci right 6.029233e-01	k: 17921	n:30000
KS ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
PPP1R9A   30000 perm   7 sec   (4243 perm/sec)   p_kst 4.156667e-02   p_cons 5.973667e-01   p_joint 8.100000e-02

Joint ci ratio: 6.251441e-02	ci left: 8.669523e-02	ci right 9.231453e-02	k: 3579	n:40000
Cons ci ratio: 1.619277e-02	ci left: 5.894939e-01	ci right 5.991424e-01	k: 23773	n:40000
KS ci ratio: 9.352007e-02	ci left: 4.010395e-02	ci right 4.406287e-02	k: 1682	n:40000
PPP1R9A   40000 perm   10 sec   (4142 perm/sec)   p_kst 4.205000e-02   p_cons 5.943250e-01   p_joint 8.947500e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R9A.9_4229_40000_0.04205_0.59432_0.089475.png
                gene_name: PPP1R9A
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 7 percent done.
PPRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
Cons ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
KS ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
PPRC1   10000 perm   2 sec   (4450 perm/sec)   p_kst 4.270000e-01   p_cons 5.592000e-01   p_joint 5.832000e-01

Outputting figure to mutsig2_images.part000000000136/PPRC1.9_5051_10000_0.427_0.5592_0.5832.png
                gene_name: PPRC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 9 percent done.
PRAMEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
KS ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
PRAMEF1   10000 perm   2 sec   (5907 perm/sec)   p_kst 5.240000e-02   p_cons 5.264000e-01   p_joint 9.860000e-02

Joint ci ratio: 7.598122e-02	ci left: 1.129697e-01	ci right 1.219419e-01	k: 2348	n:20000
Cons ci ratio: 2.688912e-02	ci left: 5.081969e-01	ci right 5.220987e-01	k: 10303	n:20000
KS ci ratio: 1.159572e-01	ci left: 5.090763e-02	ci right 5.722281e-02	k: 1080	n:20000
PRAMEF1   20000 perm   4 sec   (5313 perm/sec)   p_kst 5.400000e-02   p_cons 5.151500e-01   p_joint 1.174000e-01

Joint ci ratio: 6.169704e-02	ci left: 1.149289e-01	ci right 1.222785e-01	k: 3557	n:30000
Cons ci ratio: 2.192978e-02	ci left: 5.100602e-01	ci right 5.214034e-01	k: 15472	n:30000
KS ci ratio: 9.384106e-02	ci left: 5.238154e-02	ci right 5.757173e-02	k: 1648	n:30000
PRAMEF1   30000 perm   6 sec   (5076 perm/sec)   p_kst 5.493333e-02   p_cons 5.157333e-01   p_joint 1.185667e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF1.9_1437_30000_0.054933_0.51573_0.11857.png
                gene_name: PRAMEF1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 11 percent done.
PPP1R15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
KS ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
PPP1R15B   10000 perm   2 sec   (5298 perm/sec)   p_kst 1.319000e-01   p_cons 3.735000e-01   p_joint 2.395000e-01

Joint ci ratio: 5.854710e-02	ci left: 1.777120e-01	ci right 1.884803e-01	k: 3661	n:20000
Cons ci ratio: 3.598402e-02	ci left: 3.656441e-01	ci right 3.790931e-01	k: 7447	n:20000
KS ci ratio: 7.121812e-02	ci left: 1.268452e-01	ci right 1.362622e-01	k: 2630	n:20000
PPP1R15B   20000 perm   4 sec   (4996 perm/sec)   p_kst 1.315000e-01   p_cons 3.723500e-01   p_joint 1.830500e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R15B.7_2150_20000_0.1315_0.37235_0.18305.png
                gene_name: PPP1R15B
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 13 percent done.
PPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
PPT2   10000 perm   2 sec   (6086 perm/sec)   p_kst 4.350000e-01   p_cons 2.929000e-01   p_joint 4.031000e-01

Outputting figure to mutsig2_images.part000000000136/PPT2.7_963_10000_0.435_0.2929_0.4031.png
                gene_name: PPT2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 15 percent done.
PRAME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.893706e-02	ci left: 8.029834e-01	ci right 8.184352e-01	k: 8108	n:10000
KS ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
PRAME   10000 perm   2 sec   (5865 perm/sec)   p_kst 8.338000e-01   p_cons 8.108000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PRAME.7_1546_10000_0.8338_0.8108_1.png
                gene_name: PRAME
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
PPP1R12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
Cons ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
KS ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
PPP1R12B   10000 perm   2 sec   (5034 perm/sec)   p_kst 8.670000e-02   p_cons 4.862000e-01   p_joint 1.303000e-01

Joint ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
Cons ci ratio: 2.758656e-02	ci left: 4.953956e-01	ci right 5.093037e-01	k: 10047	n:20000
KS ci ratio: 8.928718e-02	ci left: 8.396194e-02	ci right 9.185834e-02	k: 1757	n:20000
PPP1R12B   20000 perm   4 sec   (4769 perm/sec)   p_kst 8.785000e-02   p_cons 5.023500e-01   p_joint 1.098000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R12B.5_3274_20000_0.08785_0.50235_0.1098.png
                gene_name: PPP1R12B
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 20 percent done.
PPP2R2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
KS ci ratio: 1.464252e-02	ci left: 8.710161e-01	ci right 8.839631e-01	k: 8776	n:10000
PPP2R2B   10000 perm   2 sec   (5816 perm/sec)   p_kst 8.776000e-01   p_cons 9.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R2B.5_1506_10000_0.8776_0.9535_1.png
                gene_name: PPP2R2B
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
PPP2R5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
Cons ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
KS ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
PPP2R5D   10000 perm   2 sec   (5806 perm/sec)   p_kst 4.967000e-01   p_cons 6.824000e-01   p_joint 6.913000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R5D.5_1873_10000_0.4967_0.6824_0.6913.png
                gene_name: PPP2R5D
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 24 percent done.
PPP3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
PPP3CA   10000 perm   2 sec   (5639 perm/sec)   p_kst 5.000000e-04   p_cons 5.369000e-01   p_joint 3.200000e-03

Joint ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
Cons ci ratio: 2.580618e-02	ci left: 5.287084e-01	ci right 5.425813e-01	k: 10713	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
PPP3CA   20000 perm   4 sec   (5036 perm/sec)   p_kst 4.000000e-04   p_cons 5.356500e-01   p_joint 2.950000e-03

Joint ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
Cons ci ratio: 2.107184e-02	ci left: 5.299699e-01	ci right 5.412899e-01	k: 16069	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
PPP3CA   30000 perm   6 sec   (4898 perm/sec)   p_kst 4.333333e-04   p_cons 5.356333e-01   p_joint 1.933333e-03

Joint ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
Cons ci ratio: 1.821811e-02	ci left: 5.315731e-01	ci right 5.413716e-01	k: 21459	n:40000
KS ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
PPP3CA   40000 perm   8 sec   (4809 perm/sec)   p_kst 5.250000e-04   p_cons 5.364750e-01   p_joint 2.425000e-03

Joint ci ratio: 4.379142e-01	ci left: 1.251094e-03	ci right 1.968768e-03	k: 79	n:50000
Cons ci ratio: 1.630651e-02	ci left: 5.317368e-01	ci right 5.404990e-01	k: 26806	n:50000
KS ci ratio: 7.541931e-01	ci left: 3.397085e-04	ci right 7.618283e-04	k: 26	n:50000
PPP3CA   50000 perm   11 sec   (4713 perm/sec)   p_kst 5.200000e-04   p_cons 5.361200e-01   p_joint 1.580000e-03

Joint ci ratio: 5.975752e-01	ci left: 5.045436e-04	ci right 9.460802e-04	k: 42	n:60000
Cons ci ratio: 1.489389e-02	ci left: 5.318496e-01	ci right 5.398470e-01	k: 32151	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
PPP3CA   60000 perm   13 sec   (4636 perm/sec)   p_kst 5.500000e-04   p_cons 5.358500e-01   p_joint 7.000000e-04

Joint ci ratio: 6.120175e-01	ci left: 4.082673e-04	ci right 7.780431e-04	k: 40	n:70000
Cons ci ratio: 1.375647e-02	ci left: 5.333261e-01	ci right 5.407279e-01	k: 37592	n:70000
KS ci ratio: 6.196249e-01	ci left: 3.962121e-04	ci right 7.615547e-04	k: 39	n:70000
PPP3CA   70000 perm   15 sec   (4557 perm/sec)   p_kst 5.571429e-04   p_cons 5.370286e-01   p_joint 5.714286e-04

Joint ci ratio: 5.058769e-01	ci left: 5.614651e-04	ci right 9.512195e-04	k: 59	n:80000
Cons ci ratio: 1.286036e-02	ci left: 5.338624e-01	ci right 5.407849e-01	k: 42986	n:80000
KS ci ratio: 5.841911e-01	ci left: 3.996584e-04	ci right 7.382798e-04	k: 44	n:80000
PPP3CA   80000 perm   18 sec   (4494 perm/sec)   p_kst 5.500000e-04   p_cons 5.373250e-01   p_joint 7.375000e-04

Joint ci ratio: 2.775725e-01	ci left: 1.904492e-03	ci right 2.528288e-03	k: 198	n:90000
Cons ci ratio: 1.213526e-02	ci left: 5.336356e-01	ci right 5.401620e-01	k: 48321	n:90000
KS ci ratio: 5.542146e-01	ci left: 4.028093e-04	ci right 7.197213e-04	k: 49	n:90000
PPP3CA   90000 perm   20 sec   (4418 perm/sec)   p_kst 5.444444e-04   p_cons 5.369000e-01   p_joint 2.200000e-03

Joint ci ratio: 2.702202e-01	ci left: 1.816478e-03	ci right 2.393012e-03	k: 209	n:100000
Cons ci ratio: 1.152064e-02	ci left: 5.334533e-01	ci right 5.396446e-01	k: 53655	n:100000
KS ci ratio: 5.236827e-01	ci left: 4.143613e-04	ci right 7.158412e-04	k: 55	n:100000
PPP3CA   100000 perm   23 sec   (4346 perm/sec)   p_kst 5.500000e-04   p_cons 5.365500e-01   p_joint 2.090000e-03

Joint ci ratio: 2.576449e-01	ci left: 1.829630e-03	ci right 2.378970e-03	k: 230	n:110000
Cons ci ratio: 1.097277e-02	ci left: 5.341297e-01	ci right 5.400320e-01	k: 59079	n:110000
KS ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
PPP3CA   110000 perm   26 sec   (4286 perm/sec)   p_kst 5.181818e-04   p_cons 5.370818e-01   p_joint 2.090909e-03

Joint ci ratio: 2.554610e-01	ci left: 1.708336e-03	ci right 2.216216e-03	k: 234	n:120000
Cons ci ratio: 1.049118e-02	ci left: 5.349407e-01	ci right 5.405908e-01	k: 64532	n:120000
KS ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
PPP3CA   120000 perm   28 sec   (4222 perm/sec)   p_kst 5.083333e-04   p_cons 5.377667e-01   p_joint 1.950000e-03

Joint ci ratio: 2.805053e-01	ci left: 1.289818e-03	ci right 1.717529e-03	k: 194	n:130000
Cons ci ratio: 1.008314e-02	ci left: 5.348774e-01	ci right 5.403056e-01	k: 69887	n:130000
KS ci ratio: 4.823943e-01	ci left: 3.859100e-04	ci right 6.372473e-04	k: 65	n:130000
PPP3CA   130000 perm   31 sec   (4165 perm/sec)   p_kst 5.000000e-04   p_cons 5.375923e-01   p_joint 1.492308e-03

Joint ci ratio: 2.987125e-01	ci left: 1.045303e-03	ci right 1.418705e-03	k: 171	n:140000
Cons ci ratio: 9.717053e-03	ci left: 5.349411e-01	ci right 5.401716e-01	k: 75258	n:140000
KS ci ratio: 4.618560e-01	ci left: 3.961034e-04	ci right 6.396493e-04	k: 71	n:140000
PPP3CA   140000 perm   34 sec   (4098 perm/sec)   p_kst 5.071429e-04   p_cons 5.375571e-01   p_joint 1.221429e-03

Joint ci ratio: 1.990069e-01	ci left: 2.323274e-03	ci right 2.842918e-03	k: 386	n:150000
Cons ci ratio: 9.395954e-03	ci left: 5.345860e-01	ci right 5.396393e-01	k: 80567	n:150000
KS ci ratio: 4.437357e-01	ci left: 4.051352e-04	ci right 6.415374e-04	k: 77	n:150000
PPP3CA   150000 perm   37 sec   (4037 perm/sec)   p_kst 5.133333e-04   p_cons 5.371133e-01   p_joint 2.573333e-03

Joint ci ratio: 1.957542e-01	ci left: 2.255296e-03	ci right 2.750507e-03	k: 399	n:160000
Cons ci ratio: 9.092812e-03	ci left: 5.349281e-01	ci right 5.398205e-01	k: 85980	n:160000
KS ci ratio: 4.354439e-01	ci left: 3.964882e-04	ci right 6.222552e-04	k: 80	n:160000
PPP3CA   160000 perm   40 sec   (3981 perm/sec)   p_kst 5.000000e-04   p_cons 5.373750e-01   p_joint 2.493750e-03

Joint ci ratio: 2.044007e-01	ci left: 1.938201e-03	ci right 2.384932e-03	k: 366	n:170000
Cons ci ratio: 8.829550e-03	ci left: 5.345379e-01	ci right 5.392844e-01	k: 91275	n:170000
KS ci ratio: 4.154092e-01	ci left: 4.151881e-04	ci right 6.377174e-04	k: 88	n:170000
PPP3CA   170000 perm   43 sec   (3930 perm/sec)   p_kst 5.176471e-04   p_cons 5.369118e-01   p_joint 2.152941e-03

Joint ci ratio: 2.066827e-01	ci left: 1.788351e-03	ci right 2.205727e-03	k: 358	n:180000
Cons ci ratio: 8.587700e-03	ci left: 5.342041e-01	ci right 5.388170e-01	k: 96572	n:180000
KS ci ratio: 4.108226e-01	ci left: 4.020776e-04	ci right 6.145497e-04	k: 90	n:180000
PPP3CA   180000 perm   46 sec   (3877 perm/sec)   p_kst 5.000000e-04   p_cons 5.365111e-01   p_joint 1.988889e-03

Joint ci ratio: 2.047037e-01	ci left: 1.729166e-03	ci right 2.128381e-03	k: 365	n:190000
Cons ci ratio: 8.361409e-03	ci left: 5.341019e-01	ci right 5.385917e-01	k: 101906	n:190000
KS ci ratio: 3.880326e-01	ci left: 4.330000e-04	ci right 6.458797e-04	k: 101	n:190000
PPP3CA   190000 perm   50 sec   (3825 perm/sec)   p_kst 5.315789e-04   p_cons 5.363474e-01   p_joint 1.921053e-03

Joint ci ratio: 2.001103e-01	ci left: 1.723400e-03	ci right 2.111264e-03	k: 382	n:200000
Cons ci ratio: 8.148178e-03	ci left: 5.342515e-01	ci right 5.386274e-01	k: 107288	n:200000
KS ci ratio: 3.806422e-01	ci left: 4.294174e-04	ci right 6.355094e-04	k: 105	n:200000
PPP3CA   200000 perm   53 sec   (3774 perm/sec)   p_kst 5.250000e-04   p_cons 5.364400e-01   p_joint 1.910000e-03

Joint ci ratio: 1.955680e-01	ci left: 1.722802e-03	ci right 2.100683e-03	k: 400	n:210000
Cons ci ratio: 7.949405e-03	ci left: 5.344548e-01	ci right 5.387251e-01	k: 112684	n:210000
KS ci ratio: 3.719707e-01	ci left: 4.305268e-04	ci right 6.312982e-04	k: 110	n:210000
PPP3CA   210000 perm   56 sec   (3723 perm/sec)   p_kst 5.238095e-04   p_cons 5.365905e-01   p_joint 1.904762e-03

Joint ci ratio: 2.084726e-01	ci left: 1.437313e-03	ci right 1.776035e-03	k: 352	n:220000
Cons ci ratio: 7.762586e-03	ci left: 5.347636e-01	ci right 5.389354e-01	k: 118107	n:220000
KS ci ratio: 3.607676e-01	ci left: 4.398474e-04	ci right 6.373365e-04	k: 117	n:220000
PPP3CA   220000 perm   60 sec   (3672 perm/sec)   p_kst 5.318182e-04   p_cons 5.368500e-01   p_joint 1.600000e-03

Joint ci ratio: 2.189817e-01	ci left: 1.239004e-03	ci right 1.547694e-03	k: 319	n:230000
Cons ci ratio: 7.588808e-03	ci left: 5.350161e-01	ci right 5.390960e-01	k: 123523	n:230000
KS ci ratio: 3.548052e-01	ci left: 4.365516e-04	ci right 6.285746e-04	k: 121	n:230000
PPP3CA   230000 perm   63 sec   (3625 perm/sec)   p_kst 5.260870e-04   p_cons 5.370565e-01   p_joint 1.386957e-03

Joint ci ratio: 2.156400e-01	ci left: 1.226777e-03	ci right 1.527139e-03	k: 329	n:240000
Cons ci ratio: 7.434356e-03	ci left: 5.347025e-01	ci right 5.386966e-01	k: 128808	n:240000
KS ci ratio: 3.477510e-01	ci left: 4.373573e-04	ci right 6.250481e-04	k: 126	n:240000
PPP3CA   240000 perm   67 sec   (3579 perm/sec)   p_kst 5.250000e-04   p_cons 5.367000e-01   p_joint 1.370833e-03

Joint ci ratio: 2.217873e-01	ci left: 1.109642e-03	ci right 1.390127e-03	k: 311	n:250000
Cons ci ratio: 7.284387e-03	ci left: 5.347269e-01	ci right 5.386402e-01	k: 134171	n:250000
KS ci ratio: 3.348158e-01	ci left: 4.564369e-04	ci right 6.434591e-04	k: 136	n:250000
PPP3CA   250000 perm   71 sec   (3536 perm/sec)   p_kst 5.440000e-04   p_cons 5.366840e-01   p_joint 1.244000e-03

Joint ci ratio: 2.179787e-01	ci left: 1.106941e-03	ci right 1.381295e-03	k: 322	n:260000
Cons ci ratio: 7.142204e-03	ci left: 5.348156e-01	ci right 5.386528e-01	k: 139551	n:260000
KS ci ratio: 3.254469e-01	ci left: 4.671018e-04	ci right 6.520200e-04	k: 144	n:260000
PPP3CA   260000 perm   74 sec   (3492 perm/sec)   p_kst 5.538462e-04   p_cons 5.367346e-01   p_joint 1.238462e-03

Joint ci ratio: 2.221543e-01	ci left: 1.023943e-03	ci right 1.283252e-03	k: 310	n:270000
Cons ci ratio: 7.004642e-03	ci left: 5.351392e-01	ci right 5.389045e-01	k: 144996	n:270000
KS ci ratio: 3.189153e-01	ci left: 4.702272e-04	ci right 6.518840e-04	k: 150	n:270000
PPP3CA   270000 perm   78 sec   (3451 perm/sec)   p_kst 5.555556e-04   p_cons 5.370222e-01   p_joint 1.148148e-03

Joint ci ratio: 2.218022e-01	ci left: 9.907446e-04	ci right 1.241194e-03	k: 311	n:280000
Cons ci ratio: 6.877446e-03	ci left: 5.352438e-01	ci right 5.389411e-01	k: 150386	n:280000
KS ci ratio: 3.137632e-01	ci left: 4.698729e-04	ci right 6.478727e-04	k: 155	n:280000
PPP3CA   280000 perm   82 sec   (3410 perm/sec)   p_kst 5.535714e-04   p_cons 5.370929e-01   p_joint 1.110714e-03

Joint ci ratio: 2.190133e-01	ci left: 9.826439e-04	ci right 1.227502e-03	k: 319	n:290000
Cons ci ratio: 6.760733e-03	ci left: 5.350624e-01	ci right 5.386955e-01	k: 155695	n:290000
KS ci ratio: 3.060135e-01	ci left: 4.791123e-04	ci right 6.552560e-04	k: 163	n:290000
PPP3CA   290000 perm   86 sec   (3370 perm/sec)   p_kst 5.620690e-04   p_cons 5.368793e-01   p_joint 1.100000e-03

Joint ci ratio: 2.140525e-01	ci left: 9.971786e-04	ci right 1.239291e-03	k: 334	n:300000
Cons ci ratio: 6.648072e-03	ci left: 5.350203e-01	ci right 5.385923e-01	k: 161042	n:300000
KS ci ratio: 2.996839e-01	ci left: 4.847028e-04	ci right 6.585147e-04	k: 170	n:300000
PPP3CA   300000 perm   90 sec   (3332 perm/sec)   p_kst 5.666667e-04   p_cons 5.368067e-01   p_joint 1.113333e-03

Joint ci ratio: 2.103185e-01	ci left: 1.001665e-03	ci right 1.240077e-03	k: 346	n:310000
Cons ci ratio: 6.538782e-03	ci left: 5.351395e-01	ci right 5.386533e-01	k: 166438	n:310000
KS ci ratio: 2.945606e-01	ci left: 4.869797e-04	ci right 6.580654e-04	k: 176	n:310000
PPP3CA   310000 perm   94 sec   (3293 perm/sec)   p_kst 5.677419e-04   p_cons 5.368968e-01   p_joint 1.116129e-03

Joint ci ratio: 2.103222e-01	ci left: 9.703609e-04	ci right 1.201327e-03	k: 346	n:320000
Cons ci ratio: 6.438188e-03	ci left: 5.349829e-01	ci right 5.384414e-01	k: 171748	n:320000
KS ci ratio: 2.896914e-01	ci left: 4.891379e-04	ci right 6.576207e-04	k: 182	n:320000
PPP3CA   320000 perm   98 sec   (3255 perm/sec)   p_kst 5.687500e-04   p_cons 5.367125e-01   p_joint 1.081250e-03

Joint ci ratio: 2.067768e-01	ci left: 9.754210e-04	ci right 1.203183e-03	k: 358	n:330000
Cons ci ratio: 6.340900e-03	ci left: 5.349302e-01	ci right 5.383359e-01	k: 177089	n:330000
KS ci ratio: 2.850559e-01	ci left: 4.911872e-04	ci right 6.571814e-04	k: 188	n:330000
PPP3CA   330000 perm   103 sec   (3219 perm/sec)   p_kst 5.696970e-04   p_cons 5.366333e-01   p_joint 1.084848e-03

Joint ci ratio: 2.050717e-01	ci left: 9.634686e-04	ci right 1.186352e-03	k: 364	n:340000
Cons ci ratio: 6.251033e-03	ci left: 5.346308e-01	ci right 5.379862e-01	k: 182345	n:340000
KS ci ratio: 2.828213e-01	ci left: 4.849355e-04	ci right 6.473031e-04	k: 191	n:340000
PPP3CA   340000 perm   107 sec   (3181 perm/sec)   p_kst 5.617647e-04   p_cons 5.363088e-01   p_joint 1.070588e-03

Joint ci ratio: 1.836527e-01	ci left: 1.180620e-03	ci right 1.422044e-03	k: 454	n:350000
Cons ci ratio: 6.160877e-03	ci left: 5.346719e-01	ci right 5.379789e-01	k: 187714	n:350000
KS ci ratio: 2.750499e-01	ci left: 5.003116e-04	ci right 6.624287e-04	k: 202	n:350000
PPP3CA   350000 perm   111 sec   (3145 perm/sec)   p_kst 5.771429e-04   p_cons 5.363257e-01   p_joint 1.297143e-03

Joint ci ratio: 1.832532e-01	ci left: 1.153124e-03	ci right 1.388355e-03	k: 456	n:360000
Cons ci ratio: 6.073529e-03	ci left: 5.347916e-01	ci right 5.380523e-01	k: 193112	n:360000
KS ci ratio: 2.723801e-01	ci left: 4.967625e-04	ci right 6.558999e-04	k: 206	n:360000
PPP3CA   360000 perm   116 sec   (3111 perm/sec)   p_kst 5.722222e-04   p_cons 5.364222e-01   p_joint 1.266667e-03

Joint ci ratio: 1.799360e-01	ci left: 1.165817e-03	ci right 1.398863e-03	k: 473	n:370000
Cons ci ratio: 5.988166e-03	ci left: 5.350403e-01	ci right 5.382565e-01	k: 198560	n:370000
KS ci ratio: 2.678878e-01	ci left: 5.009745e-04	ci right 6.583698e-04	k: 213	n:370000
PPP3CA   370000 perm   120 sec   (3077 perm/sec)   p_kst 5.756757e-04   p_cons 5.366486e-01   p_joint 1.278378e-03

Joint ci ratio: 1.771542e-01	ci left: 1.172847e-03	ci right 1.403286e-03	k: 488	n:380000
Cons ci ratio: 5.908396e-03	ci left: 5.350998e-01	ci right 5.382733e-01	k: 203941	n:380000
KS ci ratio: 2.630160e-01	ci left: 5.074430e-04	ci right 6.634942e-04	k: 221	n:380000
PPP3CA   380000 perm   125 sec   (3044 perm/sec)   p_kst 5.815789e-04   p_cons 5.366868e-01   p_joint 1.284211e-03

Joint ci ratio: 1.780710e-01	ci left: 1.130522e-03	ci right 1.353918e-03	k: 483	n:390000
Cons ci ratio: 5.832152e-03	ci left: 5.351206e-01	ci right 5.382532e-01	k: 209308	n:390000
KS ci ratio: 2.618405e-01	ci left: 4.992222e-04	ci right 6.519467e-04	k: 223	n:390000
PPP3CA   390000 perm   130 sec   (3007 perm/sec)   p_kst 5.717949e-04   p_cons 5.366872e-01   p_joint 1.238462e-03

Joint ci ratio: 1.805175e-01	ci left: 1.071214e-03	ci right 1.286117e-03	k: 470	n:400000
Cons ci ratio: 5.757164e-03	ci left: 5.352807e-01	ci right 5.383738e-01	k: 214731	n:400000
KS ci ratio: 2.595340e-01	ci left: 4.960882e-04	ci right 6.463002e-04	k: 227	n:400000
PPP3CA   400000 perm   134 sec   (2975 perm/sec)   p_kst 5.675000e-04   p_cons 5.368275e-01   p_joint 1.175000e-03

Joint ci ratio: 1.786315e-01	ci left: 1.068381e-03	ci right 1.280234e-03	k: 480	n:410000
Cons ci ratio: 5.684828e-03	ci left: 5.354478e-01	ci right 5.385028e-01	k: 220160	n:410000
KS ci ratio: 2.572875e-01	ci left: 4.931126e-04	ci right 6.409236e-04	k: 231	n:410000
PPP3CA   410000 perm   139 sec   (2944 perm/sec)   p_kst 5.634146e-04   p_cons 5.369756e-01   p_joint 1.170732e-03

Joint ci ratio: 1.764441e-01	ci left: 1.070245e-03	ci right 1.279592e-03	k: 492	n:420000
Cons ci ratio: 5.618702e-03	ci left: 5.352929e-01	ci right 5.383114e-01	k: 225457	n:420000
KS ci ratio: 2.534913e-01	ci left: 4.969719e-04	ci right 6.433945e-04	k: 238	n:420000
PPP3CA   420000 perm   144 sec   (2912 perm/sec)   p_kst 5.666667e-04   p_cons 5.368024e-01   p_joint 1.171429e-03

Joint ci ratio: 1.750304e-01	ci left: 1.063141e-03	ci right 1.269256e-03	k: 500	n:430000
Cons ci ratio: 5.553634e-03	ci left: 5.352524e-01	ci right 5.382355e-01	k: 230800	n:430000
KS ci ratio: 2.513968e-01	ci left: 4.941281e-04	ci right 6.383216e-04	k: 242	n:430000
PPP3CA   430000 perm   149 sec   (2882 perm/sec)   p_kst 5.627907e-04   p_cons 5.367442e-01   p_joint 1.162791e-03

Joint ci ratio: 1.724670e-01	ci left: 1.071588e-03	ci right 1.275981e-03	k: 515	n:440000
Cons ci ratio: 5.489997e-03	ci left: 5.352843e-01	ci right 5.382334e-01	k: 236174	n:440000
KS ci ratio: 2.483493e-01	ci left: 4.956805e-04	ci right 6.383028e-04	k: 248	n:440000
PPP3CA   440000 perm   154 sec   (2854 perm/sec)   p_kst 5.636364e-04   p_cons 5.367591e-01   p_joint 1.170455e-03

Joint ci ratio: 1.396995e-01	ci left: 1.624627e-03	ci right 1.870748e-03	k: 785	n:450000
Cons ci ratio: 5.427360e-03	ci left: 5.354195e-01	ci right 5.383355e-01	k: 241595	n:450000
KS ci ratio: 2.449300e-01	ci left: 4.992597e-04	ci right 6.406331e-04	k: 255	n:450000
PPP3CA   450000 perm   159 sec   (2826 perm/sec)   p_kst 5.666667e-04   p_cons 5.368778e-01   p_joint 1.744444e-03

Joint ci ratio: 1.396132e-01	ci left: 1.591405e-03	ci right 1.832332e-03	k: 786	n:460000
Cons ci ratio: 5.368272e-03	ci left: 5.354142e-01	ci right 5.382983e-01	k: 246954	n:460000
KS ci ratio: 2.416482e-01	ci left: 5.026961e-04	ci right 6.428494e-04	k: 262	n:460000
PPP3CA   460000 perm   164 sec   (2798 perm/sec)   p_kst 5.695652e-04   p_cons 5.368565e-01   p_joint 1.708696e-03

Joint ci ratio: 1.383882e-01	ci left: 1.586297e-03	ci right 1.824169e-03	k: 800	n:470000
Cons ci ratio: 5.310642e-03	ci left: 5.354498e-01	ci right 5.383030e-01	k: 252332	n:470000
KS ci ratio: 2.389380e-01	ci left: 5.039979e-04	ci right 6.427048e-04	k: 268	n:470000
PPP3CA   470000 perm   170 sec   (2771 perm/sec)   p_kst 5.702128e-04   p_cons 5.368766e-01   p_joint 1.702128e-03

Joint ci ratio: 1.373638e-01	ci left: 1.577386e-03	ci right 1.812028e-03	k: 812	n:480000
Cons ci ratio: 5.255599e-03	ci left: 5.354110e-01	ci right 5.382344e-01	k: 257675	n:480000
KS ci ratio: 2.367480e-01	ci left: 5.032938e-04	ci right 6.403514e-04	k: 273	n:480000
PPP3CA   480000 perm   175 sec   (2744 perm/sec)   p_kst 5.687500e-04   p_cons 5.368229e-01   p_joint 1.691667e-03

Joint ci ratio: 1.357043e-01	ci left: 1.584617e-03	ci right 1.817257e-03	k: 832	n:490000
Cons ci ratio: 5.201891e-03	ci left: 5.354067e-01	ci right 5.382011e-01	k: 263034	n:490000
KS ci ratio: 2.333652e-01	ci left: 5.083878e-04	ci right 6.445691e-04	k: 281	n:490000
PPP3CA   490000 perm   180 sec   (2717 perm/sec)   p_kst 5.734694e-04   p_cons 5.368041e-01   p_joint 1.697959e-03

Joint ci ratio: 1.343404e-01	ci left: 1.585776e-03	ci right 1.816060e-03	k: 849	n:500000
Cons ci ratio: 5.150170e-03	ci left: 5.353666e-01	ci right 5.381329e-01	k: 268375	n:500000
KS ci ratio: 2.301233e-01	ci left: 5.132914e-04	ci right 6.486047e-04	k: 289	n:500000
PPP3CA   500000 perm   186 sec   (2691 perm/sec)   p_kst 5.780000e-04   p_cons 5.367500e-01   p_joint 1.698000e-03

Joint ci ratio: 1.330168e-01	ci left: 1.586901e-03	ci right 1.814898e-03	k: 866	n:510000
Cons ci ratio: 5.100605e-03	ci left: 5.352655e-01	ci right 5.380046e-01	k: 273684	n:510000
KS ci ratio: 2.273950e-01	ci left: 5.161659e-04	ci right 6.503975e-04	k: 296	n:510000
PPP3CA   510000 perm   191 sec   (2666 perm/sec)   p_kst 5.803922e-04   p_cons 5.366353e-01   p_joint 1.698039e-03

Joint ci ratio: 1.325604e-01	ci left: 1.567538e-03	ci right 1.791919e-03	k: 872	n:520000
Cons ci ratio: 5.050548e-03	ci left: 5.353551e-01	ci right 5.380676e-01	k: 279090	n:520000
KS ci ratio: 2.243925e-01	ci left: 5.207539e-04	ci right 6.541434e-04	k: 304	n:520000
PPP3CA   520000 perm   197 sec   (2641 perm/sec)   p_kst 5.846154e-04   p_cons 5.367115e-01   p_joint 1.676923e-03

Joint ci ratio: 1.309937e-01	ci left: 1.576279e-03	ci right 1.799037e-03	k: 893	n:530000
Cons ci ratio: 5.004139e-03	ci left: 5.352224e-01	ci right 5.379093e-01	k: 284380	n:530000
KS ci ratio: 2.208011e-01	ci left: 5.287446e-04	ci right 6.617189e-04	k: 314	n:530000
PPP3CA   530000 perm   202 sec   (2617 perm/sec)   p_kst 5.924528e-04   p_cons 5.365660e-01   p_joint 1.684906e-03

Joint ci ratio: 1.321105e-01	ci left: 1.520222e-03	ci right 1.737033e-03	k: 878	n:540000
Cons ci ratio: 4.958671e-03	ci left: 5.351263e-01	ci right 5.377882e-01	k: 289687	n:540000
KS ci ratio: 2.177122e-01	ci left: 5.347047e-04	ci right 6.670451e-04	k: 323	n:540000
PPP3CA   540000 perm   208 sec   (2593 perm/sec)   p_kst 5.981481e-04   p_cons 5.364574e-01   p_joint 1.625926e-03

Joint ci ratio: 1.309244e-01	ci left: 1.520715e-03	ci right 1.735498e-03	k: 894	n:550000
Cons ci ratio: 4.913701e-03	ci left: 5.351065e-01	ci right 5.377441e-01	k: 295034	n:550000
KS ci ratio: 2.157240e-01	ci left: 5.352998e-04	ci right 6.664173e-04	k: 329	n:550000
PPP3CA   550000 perm   214 sec   (2570 perm/sec)   p_kst 5.981818e-04   p_cons 5.364255e-01   p_joint 1.625455e-03

Joint ci ratio: 1.310730e-01	ci left: 1.490104e-03	ci right 1.700821e-03	k: 892	n:560000
Cons ci ratio: 4.870143e-03	ci left: 5.350660e-01	ci right 5.376800e-01	k: 300369	n:560000
KS ci ratio: 2.137892e-01	ci left: 5.358789e-04	ci right 6.658066e-04	k: 335	n:560000
PPP3CA   560000 perm   220 sec   (2548 perm/sec)   p_kst 5.982143e-04   p_cons 5.363732e-01   p_joint 1.592857e-03

Joint ci ratio: 1.298429e-01	ci left: 1.492813e-03	ci right 1.701779e-03	k: 909	n:570000
Cons ci ratio: 4.827604e-03	ci left: 5.350394e-01	ci right 5.376304e-01	k: 305711	n:570000
KS ci ratio: 2.115962e-01	ci left: 5.381042e-04	ci right 6.670596e-04	k: 342	n:570000
PPP3CA   570000 perm   226 sec   (2527 perm/sec)   p_kst 6.000000e-04   p_cons 5.363351e-01   p_joint 1.594737e-03

Joint ci ratio: 1.290657e-01	ci left: 1.485426e-03	ci right 1.692018e-03	k: 920	n:580000
Cons ci ratio: 4.784684e-03	ci left: 5.351673e-01	ci right 5.377358e-01	k: 311142	n:580000
KS ci ratio: 2.103735e-01	ci left: 5.353586e-04	ci right 6.628191e-04	k: 346	n:580000
PPP3CA   580000 perm   232 sec   (2505 perm/sec)   p_kst 5.965517e-04   p_cons 5.364517e-01   p_joint 1.586207e-03

Joint ci ratio: 1.292785e-01	ci left: 1.455327e-03	ci right 1.658092e-03	k: 917	n:590000
Cons ci ratio: 4.744342e-03	ci left: 5.351384e-01	ci right 5.376850e-01	k: 316483	n:590000
KS ci ratio: 2.079892e-01	ci left: 5.391339e-04	ci right 6.658533e-04	k: 354	n:590000
PPP3CA   590000 perm   238 sec   (2483 perm/sec)   p_kst 6.000000e-04   p_cons 5.364119e-01   p_joint 1.554237e-03

Joint ci ratio: 1.420096e-01	ci left: 1.178253e-03	ci right 1.359951e-03	k: 760	n:600000
Cons ci ratio: 4.705431e-03	ci left: 5.350655e-01	ci right 5.375908e-01	k: 321797	n:600000
KS ci ratio: 2.215135e-01	ci left: 4.639073e-04	ci right 5.810031e-04	k: 312	n:600000
PPP3CA   600000 perm   244 sec   (2462 perm/sec)   p_kst 5.200000e-04   p_cons 5.363283e-01   p_joint 1.266667e-03

Joint ci ratio: 1.414539e-01	ci left: 1.168424e-03	ci right 1.347842e-03	k: 766	n:610000
Cons ci ratio: 4.666461e-03	ci left: 5.351017e-01	ci right 5.376062e-01	k: 327176	n:610000
KS ci ratio: 2.190770e-01	ci left: 4.671446e-04	ci right 5.835860e-04	k: 319	n:610000
PPP3CA   610000 perm   250 sec   (2441 perm/sec)   p_kst 5.229508e-04   p_cons 5.363541e-01   p_joint 1.255738e-03

Joint ci ratio: 1.400008e-01	ci left: 1.174476e-03	ci right 1.352817e-03	k: 782	n:620000
Cons ci ratio: 4.628818e-03	ci left: 5.350964e-01	ci right 5.375806e-01	k: 332530	n:620000
KS ci ratio: 2.170515e-01	ci left: 4.687589e-04	ci right 5.843784e-04	k: 325	n:620000
PPP3CA   620000 perm   256 sec   (2421 perm/sec)   p_kst 5.241935e-04   p_cons 5.363387e-01   p_joint 1.261290e-03

Joint ci ratio: 1.392034e-01	ci left: 1.169620e-03	ci right 1.346128e-03	k: 791	n:630000
Cons ci ratio: 4.591340e-03	ci left: 5.351708e-01	ci right 5.376352e-01	k: 337934	n:630000
KS ci ratio: 2.147577e-01	ci left: 4.718287e-04	ci right 5.868134e-04	k: 332	n:630000
PPP3CA   630000 perm   263 sec   (2396 perm/sec)   p_kst 5.269841e-04   p_cons 5.364032e-01   p_joint 1.255556e-03

Joint ci ratio: 1.383331e-01	ci left: 1.166427e-03	ci right 1.341262e-03	k: 801	n:640000
Cons ci ratio: 4.554356e-03	ci left: 5.352867e-01	ci right 5.377317e-01	k: 343366	n:640000
KS ci ratio: 2.134796e-01	ci left: 4.703712e-04	ci right 5.842292e-04	k: 336	n:640000
PPP3CA   640000 perm   269 sec   (2376 perm/sec)   p_kst 5.250000e-04   p_cons 5.365094e-01   p_joint 1.251563e-03

Joint ci ratio: 1.456044e-01	ci left: 1.032737e-03	ci right 1.196377e-03	k: 723	n:650000
Cons ci ratio: 4.518699e-03	ci left: 5.353499e-01	ci right 5.377759e-01	k: 348766	n:650000
KS ci ratio: 2.116041e-01	ci left: 4.718742e-04	ci right 5.849624e-04	k: 342	n:650000
PPP3CA   650000 perm   276 sec   (2357 perm/sec)   p_kst 5.261538e-04   p_cons 5.365631e-01   p_joint 1.112308e-03

Joint ci ratio: 1.450053e-01	ci left: 1.025849e-03	ci right 1.187672e-03	k: 729	n:660000
Cons ci ratio: 4.484973e-03	ci left: 5.352885e-01	ci right 5.376961e-01	k: 354085	n:660000
KS ci ratio: 2.100785e-01	ci left: 4.719004e-04	ci right 5.840745e-04	k: 347	n:660000
PPP3CA   660000 perm   282 sec   (2338 perm/sec)   p_kst 5.257576e-04   p_cons 5.364924e-01   p_joint 1.104545e-03

Joint ci ratio: 1.444136e-01	ci left: 1.019169e-03	ci right 1.179225e-03	k: 735	n:670000
Cons ci ratio: 4.450802e-03	ci left: 5.353618e-01	ci right 5.377513e-01	k: 359493	n:670000
KS ci ratio: 2.094779e-01	ci left: 4.676852e-04	ci right 5.784988e-04	k: 349	n:670000
PPP3CA   670000 perm   289 sec   (2319 perm/sec)   p_kst 5.208955e-04   p_cons 5.365567e-01   p_joint 1.097015e-03

Joint ci ratio: 1.431547e-01	ci left: 1.022611e-03	ci right 1.181688e-03	k: 748	n:680000
Cons ci ratio: 4.419843e-03	ci left: 5.351580e-01	ci right 5.375300e-01	k: 364714	n:680000
KS ci ratio: 2.079975e-01	ci left: 4.677761e-04	ci right 5.777282e-04	k: 354	n:680000
PPP3CA   680000 perm   296 sec   (2300 perm/sec)   p_kst 5.205882e-04   p_cons 5.363441e-01   p_joint 1.100000e-03

Joint ci ratio: 1.421149e-01	ci left: 1.023164e-03	ci right 1.181073e-03	k: 759	n:690000
Cons ci ratio: 4.387346e-03	ci left: 5.352066e-01	ci right 5.375613e-01	k: 370105	n:690000
KS ci ratio: 2.062617e-01	ci left: 4.692414e-04	ci right 5.785013e-04	k: 360	n:690000
PPP3CA   690000 perm   302 sec   (2282 perm/sec)   p_kst 5.217391e-04   p_cons 5.363841e-01   p_joint 1.100000e-03

Joint ci ratio: 1.415577e-01	ci left: 1.016814e-03	ci right 1.173076e-03	k: 765	n:700000
Cons ci ratio: 4.355781e-03	ci left: 5.352281e-01	ci right 5.375659e-01	k: 375478	n:700000
KS ci ratio: 2.056931e-01	ci left: 4.652477e-04	ci right 5.732414e-04	k: 362	n:700000
PPP3CA   700000 perm   309 sec   (2264 perm/sec)   p_kst 5.171429e-04   p_cons 5.363971e-01   p_joint 1.092857e-03

Joint ci ratio: 1.236265e-01	ci left: 1.326648e-03	ci right 1.502812e-03	k: 1003	n:710000
Cons ci ratio: 4.326002e-03	ci left: 5.351209e-01	ci right 5.374422e-01	k: 380760	n:710000
KS ci ratio: 2.040139e-01	ci left: 4.667121e-04	ci right 5.740512e-04	k: 368	n:710000
PPP3CA   710000 perm   316 sec   (2247 perm/sec)   p_kst 5.183099e-04   p_cons 5.362817e-01   p_joint 1.412676e-03

Joint ci ratio: 1.230766e-01	ci left: 1.320336e-03	ci right 1.494826e-03	k: 1012	n:720000
Cons ci ratio: 4.295901e-03	ci left: 5.351237e-01	ci right 5.374288e-01	k: 386119	n:720000
KS ci ratio: 2.034637e-01	ci left: 4.628660e-04	ci right 5.689977e-04	k: 370	n:720000
PPP3CA   720000 perm   323 sec   (2228 perm/sec)   p_kst 5.138889e-04   p_cons 5.362764e-01   p_joint 1.405556e-03

Joint ci ratio: 1.219971e-01	ci left: 1.326151e-03	ci right 1.499762e-03	k: 1030	n:730000
Cons ci ratio: 4.266561e-03	ci left: 5.351100e-01	ci right 5.373993e-01	k: 391466	n:730000
KS ci ratio: 2.018380e-01	ci left: 4.643275e-04	ci right 5.698388e-04	k: 376	n:730000
PPP3CA   730000 perm   330 sec   (2211 perm/sec)   p_kst 5.150685e-04   p_cons 5.362548e-01   p_joint 1.410959e-03

Joint ci ratio: 1.209456e-01	ci left: 1.331816e-03	ci right 1.504557e-03	k: 1048	n:740000
Cons ci ratio: 4.236536e-03	ci left: 5.352468e-01	ci right 5.375205e-01	k: 396924	n:740000
KS ci ratio: 1.994706e-01	ci left: 4.696041e-04	ci right 5.749105e-04	k: 385	n:740000
PPP3CA   740000 perm   337 sec   (2194 perm/sec)   p_kst 5.202703e-04   p_cons 5.363838e-01   p_joint 1.416216e-03

Joint ci ratio: 1.210045e-01	ci left: 1.312765e-03	ci right 1.483124e-03	k: 1047	n:750000
Cons ci ratio: 4.207327e-03	ci left: 5.353573e-01	ci right 5.376158e-01	k: 402365	n:750000
KS ci ratio: 1.976859e-01	ci left: 4.722121e-04	ci right 5.770417e-04	k: 392	n:750000
PPP3CA   750000 perm   345 sec   (2177 perm/sec)   p_kst 5.226667e-04   p_cons 5.364867e-01   p_joint 1.396000e-03

Joint ci ratio: 1.242534e-01	ci left: 1.226615e-03	ci right 1.390382e-03	k: 993	n:760000
Cons ci ratio: 4.180284e-03	ci left: 5.352781e-01	ci right 5.375217e-01	k: 407664	n:760000
KS ci ratio: 1.957037e-01	ci left: 4.760068e-04	ci right 5.804930e-04	k: 400	n:760000
PPP3CA   760000 perm   352 sec   (2161 perm/sec)   p_kst 5.263158e-04   p_cons 5.364000e-01   p_joint 1.306579e-03

Joint ci ratio: 1.232651e-01	ci left: 1.230821e-03	ci right 1.393747e-03	k: 1009	n:770000
Cons ci ratio: 4.153604e-03	ci left: 5.352191e-01	ci right 5.374481e-01	k: 412977	n:770000
KS ci ratio: 1.940174e-01	ci left: 4.784724e-04	ci right 5.824879e-04	k: 407	n:770000
PPP3CA   770000 perm   359 sec   (2144 perm/sec)   p_kst 5.285714e-04   p_cons 5.363338e-01   p_joint 1.310390e-03

Joint ci ratio: 1.223597e-01	ci left: 1.233681e-03	ci right 1.395700e-03	k: 1024	n:780000
Cons ci ratio: 4.127237e-03	ci left: 5.351848e-01	ci right 5.373995e-01	k: 418308	n:780000
KS ci ratio: 1.926062e-01	ci left: 4.796581e-04	ci right 5.830843e-04	k: 413	n:780000
PPP3CA   780000 perm   367 sec   (2128 perm/sec)   p_kst 5.294872e-04   p_cons 5.362923e-01   p_joint 1.312821e-03

Joint ci ratio: 1.229022e-01	ci left: 1.207021e-03	ci right 1.366292e-03	k: 1015	n:790000
Cons ci ratio: 4.101866e-03	ci left: 5.350907e-01	ci right 5.372913e-01	k: 423591	n:790000
KS ci ratio: 1.916826e-01	ci left: 4.784062e-04	ci right 5.810100e-04	k: 417	n:790000
PPP3CA   790000 perm   374 sec   (2112 perm/sec)   p_kst 5.278481e-04   p_cons 5.361911e-01   p_joint 1.284810e-03

Joint ci ratio: 1.230852e-01	ci left: 1.188298e-03	ci right 1.345349e-03	k: 1012	n:800000
Cons ci ratio: 4.075779e-03	ci left: 5.351427e-01	ci right 5.373295e-01	k: 428989	n:800000
KS ci ratio: 1.903215e-01	ci left: 4.795675e-04	ci right 5.816056e-04	k: 423	n:800000
PPP3CA   800000 perm   382 sec   (2097 perm/sec)   p_kst 5.287500e-04   p_cons 5.362362e-01   p_joint 1.265000e-03

Joint ci ratio: 1.226626e-01	ci left: 1.182003e-03	ci right 1.337648e-03	k: 1019	n:810000
Cons ci ratio: 4.050988e-03	ci left: 5.350947e-01	ci right 5.372680e-01	k: 434307	n:810000
KS ci ratio: 1.896520e-01	ci left: 4.771745e-04	ci right 5.783050e-04	k: 426	n:810000
PPP3CA   810000 perm   389 sec   (2081 perm/sec)   p_kst 5.259259e-04   p_cons 5.361815e-01   p_joint 1.258025e-03

Joint ci ratio: 1.269741e-01	ci left: 1.087247e-03	ci right 1.235825e-03	k: 951	n:820000
Cons ci ratio: 4.025963e-03	ci left: 5.351321e-01	ci right 5.372920e-01	k: 439694	n:820000
KS ci ratio: 1.889895e-01	ci left: 4.748403e-04	ci right 5.750843e-04	k: 429	n:820000
PPP3CA   820000 perm   397 sec   (2066 perm/sec)   p_kst 5.231707e-04   p_cons 5.362122e-01   p_joint 1.159756e-03

Joint ci ratio: 1.263783e-01	ci left: 1.084647e-03	ci right 1.232123e-03	k: 960	n:830000
Cons ci ratio: 4.002054e-03	ci left: 5.350867e-01	ci right 5.372336e-01	k: 445013	n:830000
KS ci ratio: 1.876845e-01	ci left: 4.760075e-04	ci right 5.757249e-04	k: 435	n:830000
PPP3CA   830000 perm   405 sec   (2052 perm/sec)   p_kst 5.240964e-04   p_cons 5.361602e-01   p_joint 1.156627e-03

Joint ci ratio: 1.283325e-01	ci left: 1.038309e-03	ci right 1.181833e-03	k: 931	n:840000
Cons ci ratio: 3.977682e-03	ci left: 5.351531e-01	ci right 5.372871e-01	k: 450425	n:840000
KS ci ratio: 1.868296e-01	ci left: 4.748794e-04	ci right 5.738560e-04	k: 439	n:840000
PPP3CA   840000 perm   412 sec   (2037 perm/sec)   p_kst 5.226190e-04   p_cons 5.362202e-01   p_joint 1.108333e-03

Joint ci ratio: 1.275142e-01	ci left: 1.039760e-03	ci right 1.182499e-03	k: 943	n:850000
Cons ci ratio: 3.953702e-03	ci left: 5.352239e-01	ci right 5.373453e-01	k: 455842	n:850000
KS ci ratio: 1.861962e-01	ci left: 4.726571e-04	ci right 5.707988e-04	k: 442	n:850000
PPP3CA   850000 perm   420 sec   (2022 perm/sec)   p_kst 5.200000e-04   p_cons 5.362847e-01   p_joint 1.109412e-03

Joint ci ratio: 1.280594e-01	ci left: 1.018664e-03	ci right 1.159150e-03	k: 935	n:860000
Cons ci ratio: 3.931152e-03	ci left: 5.351663e-01	ci right 5.372754e-01	k: 461150	n:860000
KS ci ratio: 1.851542e-01	ci left: 4.727048e-04	ci right 5.702455e-04	k: 447	n:860000
PPP3CA   860000 perm   428 sec   (2009 perm/sec)   p_kst 5.197674e-04   p_cons 5.362209e-01   p_joint 1.087209e-03

Joint ci ratio: 1.330638e-01	ci left: 9.302313e-04	ci right 1.063931e-03	k: 866	n:870000
Cons ci ratio: 3.908948e-03	ci left: 5.351146e-01	ci right 5.372116e-01	k: 466462	n:870000
KS ci ratio: 1.833216e-01	ci left: 4.771393e-04	ci right 5.745122e-04	k: 456	n:870000
PPP3CA   870000 perm   436 sec   (1995 perm/sec)   p_kst 5.241379e-04   p_cons 5.361632e-01   p_joint 9.954023e-04

Joint ci ratio: 1.040154e-01	ci left: 1.527531e-03	ci right 1.696231e-03	k: 1417	n:880000
Cons ci ratio: 3.886547e-03	ci left: 5.351369e-01	ci right 5.372219e-01	k: 471838	n:880000
KS ci ratio: 1.809604e-01	ci left: 4.847321e-04	ci right 5.822408e-04	k: 468	n:880000
PPP3CA   880000 perm   444 sec   (1981 perm/sec)   p_kst 5.318182e-04   p_cons 5.361795e-01   p_joint 1.610227e-03

Joint ci ratio: 1.037966e-01	ci left: 1.516934e-03	ci right 1.684090e-03	k: 1423	n:890000
Cons ci ratio: 3.864919e-03	ci left: 5.351082e-01	ci right 5.371814e-01	k: 477169	n:890000
KS ci ratio: 1.796248e-01	ci left: 4.867959e-04	ci right 5.839185e-04	k: 475	n:890000
PPP3CA   890000 perm   452 sec   (1968 perm/sec)   p_kst 5.337079e-04   p_cons 5.361449e-01   p_joint 1.598876e-03

Joint ci ratio: 1.043494e-01	ci left: 1.483845e-03	ci right 1.648279e-03	k: 1408	n:900000
Cons ci ratio: 3.844156e-03	ci left: 5.350146e-01	ci right 5.370763e-01	k: 482441	n:900000
KS ci ratio: 1.786887e-01	ci left: 4.866935e-04	ci right 5.832349e-04	k: 480	n:900000
PPP3CA   900000 perm   460 sec   (1955 perm/sec)   p_kst 5.333333e-04   p_cons 5.360456e-01   p_joint 1.564444e-03

Joint ci ratio: 1.069274e-01	ci left: 1.395854e-03	ci right 1.554599e-03	k: 1341	n:910000
Cons ci ratio: 3.822971e-03	ci left: 5.350209e-01	ci right 5.370712e-01	k: 487802	n:910000
KS ci ratio: 1.781343e-01	ci left: 4.844947e-04	ci right 5.802696e-04	k: 483	n:910000
PPP3CA   910000 perm   469 sec   (1942 perm/sec)   p_kst 5.307692e-04   p_cons 5.360462e-01   p_joint 1.473626e-03

Joint ci ratio: 1.067294e-01	ci left: 1.385971e-03	ci right 1.543282e-03	k: 1346	n:920000
Cons ci ratio: 3.802366e-03	ci left: 5.349966e-01	ci right 5.370358e-01	k: 493135	n:920000
KS ci ratio: 1.772213e-01	ci left: 4.844215e-04	ci right 5.796386e-04	k: 488	n:920000
PPP3CA   920000 perm   477 sec   (1929 perm/sec)   p_kst 5.304348e-04   p_cons 5.360163e-01   p_joint 1.463043e-03

Joint ci ratio: 1.062181e-01	ci left: 1.384674e-03	ci right 1.541038e-03	k: 1359	n:930000
Cons ci ratio: 3.781231e-03	ci left: 5.350858e-01	ci right 5.371140e-01	k: 498573	n:930000
KS ci ratio: 1.766804e-01	ci left: 4.822956e-04	ci right 5.767745e-04	k: 491	n:930000
PPP3CA   930000 perm   485 sec   (1917 perm/sec)   p_kst 5.279570e-04   p_cons 5.361000e-01   p_joint 1.461290e-03

Joint ci ratio: 1.054836e-01	ci left: 1.389622e-03	ci right 1.545391e-03	k: 1378	n:940000
Cons ci ratio: 3.760767e-03	ci left: 5.351306e-01	ci right 5.371479e-01	k: 503971	n:940000
KS ci ratio: 1.749113e-01	ci left: 4.873351e-04	ci right 5.817444e-04	k: 501	n:940000
PPP3CA   940000 perm   494 sec   (1903 perm/sec)   p_kst 5.329787e-04   p_cons 5.361394e-01   p_joint 1.465957e-03

Joint ci ratio: 1.062981e-01	ci left: 1.353473e-03	ci right 1.506435e-03	k: 1357	n:950000
Cons ci ratio: 3.740893e-03	ci left: 5.351397e-01	ci right 5.371464e-01	k: 509336	n:950000
KS ci ratio: 1.743912e-01	ci left: 4.852250e-04	ci right 5.789166e-04	k: 504	n:950000
PPP3CA   950000 perm   502 sec   (1891 perm/sec)   p_kst 5.305263e-04   p_cons 5.361432e-01   p_joint 1.428421e-03

Joint ci ratio: 1.056387e-01	ci left: 1.356613e-03	ci right 1.508920e-03	k: 1374	n:960000
Cons ci ratio: 3.721088e-03	ci left: 5.351810e-01	ci right 5.371771e-01	k: 514732	n:960000
KS ci ratio: 1.731949e-01	ci left: 4.871452e-04	ci right 5.804947e-04	k: 511	n:960000
PPP3CA   960000 perm   511 sec   (1878 perm/sec)   p_kst 5.322917e-04   p_cons 5.361792e-01   p_joint 1.431250e-03

Joint ci ratio: 1.050293e-01	ci left: 1.358688e-03	ci right 1.510294e-03	k: 1390	n:970000
Cons ci ratio: 3.701649e-03	ci left: 5.352142e-01	ci right 5.372000e-01	k: 520121	n:970000
KS ci ratio: 1.721888e-01	ci left: 4.880413e-04	ci right 5.809629e-04	k: 517	n:970000
PPP3CA   970000 perm   520 sec   (1867 perm/sec)   p_kst 5.329897e-04   p_cons 5.362072e-01   p_joint 1.432990e-03

Joint ci ratio: 9.518794e-02	ci left: 1.645301e-03	ci right 1.810728e-03	k: 1692	n:980000
Cons ci ratio: 3.682557e-03	ci left: 5.352406e-01	ci right 5.372163e-01	k: 525504	n:980000
KS ci ratio: 1.715280e-01	ci left: 4.869673e-04	ci right 5.792917e-04	k: 521	n:980000
PPP3CA   980000 perm   528 sec   (1855 perm/sec)   p_kst 5.316327e-04   p_cons 5.362286e-01   p_joint 1.726531e-03

Joint ci ratio: 1.026563e-01	ci left: 1.395193e-03	ci right 1.547142e-03	k: 1455	n:990000
Cons ci ratio: 3.664188e-03	ci left: 5.352080e-01	ci right 5.371736e-01	k: 530829	n:990000
KS ci ratio: 1.703892e-01	ci left: 4.888167e-04	ci right 5.808132e-04	k: 528	n:990000
PPP3CA   990000 perm   537 sec   (1843 perm/sec)   p_kst 5.333333e-04   p_cons 5.361909e-01   p_joint 1.469697e-03

Joint ci ratio: 1.028695e-01	ci left: 1.375394e-03	ci right 1.525517e-03	k: 1449	n:1000000
Cons ci ratio: 3.645967e-03	ci left: 5.351930e-01	ci right 5.371488e-01	k: 536171	n:1000000
KS ci ratio: 1.692727e-01	ci left: 4.906310e-04	ci right 5.823023e-04	k: 535	n:1000000
PPP3CA   1000000 perm   546 sec   (1832 perm/sec)   p_kst 5.350000e-04   p_cons 5.361710e-01   p_joint 1.449000e-03

Joint ci ratio: 1.044326e-01	ci left: 1.320304e-03	ci right 1.466738e-03	k: 1406	n:1010000
Cons ci ratio: 3.627828e-03	ci left: 5.352041e-01	ci right 5.371502e-01	k: 541539	n:1010000
KS ci ratio: 1.689581e-01	ci left: 4.876696e-04	ci right 5.786009e-04	k: 537	n:1010000
PPP3CA   1010000 perm   555 sec   (1820 perm/sec)   p_kst 5.316832e-04   p_cons 5.361772e-01   p_joint 1.392079e-03

Joint ci ratio: 1.040269e-01	ci left: 1.317863e-03	ci right 1.463424e-03	k: 1417	n:1020000
Cons ci ratio: 3.610390e-03	ci left: 5.351551e-01	ci right 5.370917e-01	k: 546846	n:1020000
KS ci ratio: 1.683336e-01	ci left: 4.866445e-04	ci right 5.770153e-04	k: 541	n:1020000
PPP3CA   1020000 perm   564 sec   (1809 perm/sec)   p_kst 5.303922e-04   p_cons 5.361235e-01   p_joint 1.389216e-03

Joint ci ratio: 1.033366e-01	ci left: 1.323036e-03	ci right 1.468140e-03	k: 1436	n:1030000
Cons ci ratio: 3.592045e-03	ci left: 5.352674e-01	ci right 5.371945e-01	k: 552318	n:1030000
KS ci ratio: 1.671046e-01	ci left: 4.893609e-04	ci right 5.795059e-04	k: 549	n:1030000
PPP3CA   1030000 perm   573 sec   (1798 perm/sec)   p_kst 5.330097e-04   p_cons 5.362311e-01   p_joint 1.394175e-03

Joint ci ratio: 1.211439e-01	ci left: 9.448295e-04	ci right 1.067592e-03	k: 1045	n:1040000
Cons ci ratio: 3.574902e-03	ci left: 5.352487e-01	ci right 5.371665e-01	k: 557656	n:1040000
KS ci ratio: 1.597209e-01	ci left: 5.326127e-04	ci right 6.259745e-04	k: 601	n:1040000
PPP3CA   1040000 perm   582 sec   (1787 perm/sec)   p_kst 5.778846e-04   p_cons 5.362077e-01   p_joint 1.004808e-03

Joint ci ratio: 1.214938e-01	ci left: 9.302899e-04	ci right 1.051538e-03	k: 1039	n:1050000
Cons ci ratio: 3.557729e-03	ci left: 5.352684e-01	ci right 5.371771e-01	k: 563034	n:1050000
KS ci ratio: 1.593247e-01	ci left: 5.302832e-04	ci right 6.229840e-04	k: 604	n:1050000
PPP3CA   1050000 perm   591 sec   (1777 perm/sec)   p_kst 5.752381e-04   p_cons 5.362229e-01   p_joint 9.895238e-04

Joint ci ratio: 1.207987e-01	ci left: 9.324913e-04	ci right 1.053281e-03	k: 1051	n:1060000
Cons ci ratio: 3.540251e-03	ci left: 5.353652e-01	ci right 5.372648e-01	k: 568494	n:1060000
KS ci ratio: 1.585404e-01	ci left: 5.307158e-04	ci right 6.229921e-04	k: 610	n:1060000
PPP3CA   1060000 perm   600 sec   (1766 perm/sec)   p_kst 5.754717e-04   p_cons 5.363151e-01   p_joint 9.915094e-04

Joint ci ratio: 1.203990e-01	ci left: 9.301211e-04	ci right 1.050177e-03	k: 1058	n:1070000
Cons ci ratio: 3.523630e-03	ci left: 5.353751e-01	ci right 5.372658e-01	k: 573863	n:1070000
KS ci ratio: 1.580241e-01	ci left: 5.293461e-04	ci right 6.210560e-04	k: 614	n:1070000
PPP3CA   1070000 perm   610 sec   (1754 perm/sec)   p_kst 5.738318e-04   p_cons 5.363206e-01   p_joint 9.887850e-04

Joint ci ratio: 1.242776e-01	ci left: 8.631631e-04	ci right 9.784294e-04	k: 993	n:1080000
Cons ci ratio: 3.507091e-03	ci left: 5.354062e-01	ci right 5.372881e-01	k: 579255	n:1080000
KS ci ratio: 1.572589e-01	ci left: 5.297812e-04	ci right 6.210800e-04	k: 620	n:1080000
PPP3CA   1080000 perm   620 sec   (1743 perm/sec)   p_kst 5.740741e-04   p_cons 5.363472e-01   p_joint 9.194444e-04

Joint ci ratio: 1.240286e-01	ci left: 8.587998e-04	ci right 9.732367e-04	k: 997	n:1090000
Cons ci ratio: 3.490847e-03	ci left: 5.354275e-01	ci right 5.373007e-01	k: 584637	n:1090000
KS ci ratio: 1.571328e-01	ci left: 5.258020e-04	ci right 6.163356e-04	k: 621	n:1090000
PPP3CA   1090000 perm   629 sec   (1733 perm/sec)   p_kst 5.697248e-04   p_cons 5.363642e-01   p_joint 9.146789e-04

Joint ci ratio: 1.247822e-01	ci left: 8.404224e-04	ci right 9.531413e-04	k: 985	n:1100000
Cons ci ratio: 3.474992e-03	ci left: 5.354248e-01	ci right 5.372895e-01	k: 589993	n:1100000
KS ci ratio: 1.562559e-01	ci left: 5.271362e-04	ci right 6.173455e-04	k: 628	n:1100000
PPP3CA   1100000 perm   639 sec   (1721 perm/sec)   p_kst 5.709091e-04   p_cons 5.363573e-01   p_joint 8.954545e-04

Joint ci ratio: 1.372611e-01	ci left: 6.838310e-04	ci right 7.854701e-04	k: 814	n:1110000
Cons ci ratio: 3.459019e-03	ci left: 5.354700e-01	ci right 5.373262e-01	k: 595402	n:1110000
KS ci ratio: 1.551496e-01	ci left: 5.301795e-04	ci right 6.202075e-04	k: 637	n:1110000
PPP3CA   1110000 perm   649 sec   (1711 perm/sec)   p_kst 5.738739e-04   p_cons 5.363982e-01   p_joint 7.333333e-04

Joint ci ratio: 1.367587e-01	ci left: 6.828989e-04	ci right 7.839976e-04	k: 820	n:1120000
Cons ci ratio: 3.443097e-03	ci left: 5.355384e-01	ci right 5.373864e-01	k: 600838	n:1120000
KS ci ratio: 1.546656e-01	ci left: 5.288787e-04	ci right 6.183798e-04	k: 641	n:1120000
PPP3CA   1120000 perm   659 sec   (1700 perm/sec)   p_kst 5.723214e-04   p_cons 5.364625e-01   p_joint 7.321429e-04

Joint ci ratio: 1.365098e-01	ci left: 6.794196e-04	ci right 7.798053e-04	k: 823	n:1130000
Cons ci ratio: 3.427613e-03	ci left: 5.355738e-01	ci right 5.374136e-01	k: 606238	n:1130000
KS ci ratio: 1.541862e-01	ci left: 5.276013e-04	ci right 6.165839e-04	k: 645	n:1130000
PPP3CA   1130000 perm   669 sec   (1689 perm/sec)   p_kst 5.707965e-04   p_cons 5.364938e-01   p_joint 7.283186e-04

Joint ci ratio: 1.160932e-01	ci left: 9.411092e-04	ci right 1.057941e-03	k: 1138	n:1140000
Cons ci ratio: 3.412726e-03	ci left: 5.355516e-01	ci right 5.373833e-01	k: 611573	n:1140000
KS ci ratio: 1.528896e-01	ci left: 5.322518e-04	ci right 6.211947e-04	k: 656	n:1140000
PPP3CA   1140000 perm   679 sec   (1680 perm/sec)   p_kst 5.754386e-04   p_cons 5.364675e-01   p_joint 9.982456e-04

Joint ci ratio: 1.154362e-01	ci left: 9.439027e-04	ci right 1.060373e-03	k: 1151	n:1150000
Cons ci ratio: 3.398359e-03	ci left: 5.354820e-01	ci right 5.373057e-01	k: 616853	n:1150000
KS ci ratio: 1.518529e-01	ci left: 5.351513e-04	ci right 6.239172e-04	k: 665	n:1150000
PPP3CA   1150000 perm   689 sec   (1670 perm/sec)   p_kst 5.782609e-04   p_cons 5.363939e-01   p_joint 1.000870e-03

Joint ci ratio: 1.165561e-01	ci left: 9.173496e-04	ci right 1.031717e-03	k: 1129	n:1160000
Cons ci ratio: 3.384137e-03	ci left: 5.354187e-01	ci right 5.372345e-01	k: 622139	n:1160000
KS ci ratio: 1.512861e-01	ci left: 5.346848e-04	ci right 6.230123e-04	k: 670	n:1160000
PPP3CA   1160000 perm   699 sec   (1660 perm/sec)   p_kst 5.775862e-04   p_cons 5.363267e-01   p_joint 9.732759e-04

Joint ci ratio: 1.159420e-01	ci left: 9.194673e-04	ci right 1.033454e-03	k: 1141	n:1170000
Cons ci ratio: 3.369848e-03	ci left: 5.353925e-01	ci right 5.372005e-01	k: 627467	n:1170000
KS ci ratio: 1.502814e-01	ci left: 5.375170e-04	ci right 6.256696e-04	k: 679	n:1170000
PPP3CA   1170000 perm   709 sec   (1651 perm/sec)   p_kst 5.803419e-04   p_cons 5.362966e-01   p_joint 9.752137e-04

Joint ci ratio: 1.153875e-01	ci left: 9.207276e-04	ci right 1.034287e-03	k: 1152	n:1180000
Cons ci ratio: 3.355201e-03	ci left: 5.354463e-01	ci right 5.372467e-01	k: 632889	n:1180000
KS ci ratio: 1.495137e-01	ci left: 5.386715e-04	ci right 6.265219e-04	k: 686	n:1180000
PPP3CA   1180000 perm   719 sec   (1641 perm/sec)   p_kst 5.813559e-04   p_cons 5.363466e-01   p_joint 9.762712e-04

Joint ci ratio: 1.106390e-01	ci left: 9.954683e-04	ci right 1.112864e-03	k: 1253	n:1190000
Cons ci ratio: 3.341217e-03	ci left: 5.354287e-01	ci right 5.372215e-01	k: 638227	n:1190000
KS ci ratio: 1.480127e-01	ci left: 5.454718e-04	ci right 6.334591e-04	k: 700	n:1190000
PPP3CA   1190000 perm   729 sec   (1632 perm/sec)   p_kst 5.882353e-04   p_cons 5.363252e-01   p_joint 1.052941e-03

Joint ci ratio: 1.101133e-01	ci left: 9.968967e-04	ci right 1.113866e-03	k: 1265	n:1200000
Cons ci ratio: 3.327435e-03	ci left: 5.354073e-01	ci right 5.371926e-01	k: 643560	n:1200000
KS ci ratio: 1.472791e-01	ci left: 5.465440e-04	ci right 6.342289e-04	k: 707	n:1200000
PPP3CA   1200000 perm   739 sec   (1623 perm/sec)   p_kst 5.891667e-04   p_cons 5.363000e-01   p_joint 1.054167e-03

Joint ci ratio: 1.095522e-01	ci left: 9.991066e-04	ci right 1.115700e-03	k: 1278	n:1210000
Cons ci ratio: 3.312952e-03	ci left: 5.355168e-01	ci right 5.372946e-01	k: 649051	n:1210000
KS ci ratio: 1.462496e-01	ci left: 5.499882e-04	ci right 6.375550e-04	k: 717	n:1210000
PPP3CA   1210000 perm   750 sec   (1613 perm/sec)   p_kst 5.925620e-04   p_cons 5.364058e-01   p_joint 1.056198e-03

Joint ci ratio: 1.109954e-01	ci left: 9.646131e-04	ci right 1.078761e-03	k: 1245	n:1220000
Cons ci ratio: 3.299021e-03	ci left: 5.355695e-01	ci right 5.373401e-01	k: 654475	n:1220000
KS ci ratio: 1.457431e-01	ci left: 5.494287e-04	ci right 6.365771e-04	k: 722	n:1220000
PPP3CA   1220000 perm   760 sec   (1605 perm/sec)   p_kst 5.918033e-04   p_cons 5.364549e-01   p_joint 1.020492e-03

Joint ci ratio: 1.120358e-01	ci left: 9.385923e-04	ci right 1.050771e-03	k: 1222	n:1230000
Cons ci ratio: 3.285484e-03	ci left: 5.355882e-01	ci right 5.373515e-01	k: 659858	n:1230000
KS ci ratio: 1.452418e-01	ci left: 5.488789e-04	ci right 6.356146e-04	k: 727	n:1230000
PPP3CA   1230000 perm   771 sec   (1596 perm/sec)   p_kst 5.910569e-04   p_cons 5.364699e-01   p_joint 9.934959e-04

Joint ci ratio: 1.115805e-01	ci left: 9.388620e-04	ci right 1.050587e-03	k: 1232	n:1240000
Cons ci ratio: 3.272335e-03	ci left: 5.355726e-01	ci right 5.373288e-01	k: 665199	n:1240000
KS ci ratio: 1.447456e-01	ci left: 5.483384e-04	ci right 6.346671e-04	k: 732	n:1240000
PPP3CA   1240000 perm   782 sec   (1587 perm/sec)   p_kst 5.903226e-04   p_cons 5.364508e-01   p_joint 9.935484e-04

Joint ci ratio: 1.116263e-01	ci left: 9.305732e-04	ci right 1.041360e-03	k: 1231	n:1250000
Cons ci ratio: 3.259196e-03	ci left: 5.355797e-01	ci right 5.373289e-01	k: 670568	n:1250000
KS ci ratio: 1.441568e-01	ci left: 5.485782e-04	ci right 6.345632e-04	k: 738	n:1250000
PPP3CA   1250000 perm   792 sec   (1578 perm/sec)   p_kst 5.904000e-04   p_cons 5.364544e-01   p_joint 9.848000e-04

Joint ci ratio: 1.111760e-01	ci left: 9.309031e-04	ci right 1.041253e-03	k: 1241	n:1260000
Cons ci ratio: 3.246353e-03	ci left: 5.355653e-01	ci right 5.373075e-01	k: 675910	n:1260000
KS ci ratio: 1.434788e-01	ci left: 5.495801e-04	ci right 6.352823e-04	k: 745	n:1260000
PPP3CA   1260000 perm   803 sec   (1569 perm/sec)   p_kst 5.912698e-04   p_cons 5.364365e-01   p_joint 9.849206e-04

Joint ci ratio: 1.108641e-01	ci left: 9.289319e-04	ci right 1.038719e-03	k: 1248	n:1270000
Cons ci ratio: 3.233114e-03	ci left: 5.356354e-01	ci right 5.373707e-01	k: 681359	n:1270000
KS ci ratio: 1.429053e-01	ci left: 5.498079e-04	ci right 6.351736e-04	k: 751	n:1270000
PPP3CA   1270000 perm   814 sec   (1561 perm/sec)   p_kst 5.913386e-04   p_cons 5.365031e-01   p_joint 9.826772e-04

Joint ci ratio: 1.101605e-01	ci left: 9.338292e-04	ci right 1.043449e-03	k: 1264	n:1280000
Cons ci ratio: 3.220460e-03	ci left: 5.356388e-01	ci right 5.373673e-01	k: 686724	n:1280000
KS ci ratio: 1.417782e-01	ci left: 5.545537e-04	ci right 6.399198e-04	k: 763	n:1280000
PPP3CA   1280000 perm   824 sec   (1553 perm/sec)   p_kst 5.960938e-04   p_cons 5.365031e-01   p_joint 9.875000e-04

Joint ci ratio: 1.098571e-01	ci left: 9.318672e-04	ci right 1.040936e-03	k: 1271	n:1290000
Cons ci ratio: 3.207853e-03	ci left: 5.356576e-01	ci right 5.373794e-01	k: 692109	n:1290000
KS ci ratio: 1.415009e-01	ci left: 5.524980e-04	ci right 6.373672e-04	k: 766	n:1290000
PPP3CA   1290000 perm   835 sec   (1544 perm/sec)   p_kst 5.937984e-04   p_cons 5.365186e-01   p_joint 9.852713e-04

Joint ci ratio: 1.135353e-01	ci left: 8.641298e-04	ci right 9.688834e-04	k: 1190	n:1300000
Cons ci ratio: 3.195364e-03	ci left: 5.356808e-01	ci right 5.373960e-01	k: 697500	n:1300000
KS ci ratio: 1.407685e-01	ci left: 5.541846e-04	ci right 6.388353e-04	k: 774	n:1300000
PPP3CA   1300000 perm   846 sec   (1536 perm/sec)   p_kst 5.953846e-04   p_cons 5.365385e-01   p_joint 9.153846e-04

Joint ci ratio: 1.130145e-01	ci left: 8.656925e-04	ci right 9.701221e-04	k: 1201	n:1310000
Cons ci ratio: 3.183147e-03	ci left: 5.356838e-01	ci right 5.373924e-01	k: 702865	n:1310000
KS ci ratio: 1.404970e-01	ci left: 5.521636e-04	ci right 6.363294e-04	k: 777	n:1310000
PPP3CA   1310000 perm   857 sec   (1528 perm/sec)   p_kst 5.931298e-04   p_cons 5.365382e-01   p_joint 9.167939e-04

Joint ci ratio: 1.124545e-01	ci left: 8.679689e-04	ci right 9.721197e-04	k: 1213	n:1320000
Cons ci ratio: 3.171073e-03	ci left: 5.356860e-01	ci right 5.373881e-01	k: 708229	n:1320000
KS ci ratio: 1.397801e-01	ci left: 5.538287e-04	ci right 6.377816e-04	k: 785	n:1320000
PPP3CA   1320000 perm   868 sec   (1520 perm/sec)   p_kst 5.946970e-04   p_cons 5.365371e-01   p_joint 9.189394e-04

Joint ci ratio: 1.119484e-01	ci left: 8.694814e-04	ci right 9.733132e-04	k: 1224	n:1330000
Cons ci ratio: 3.159184e-03	ci left: 5.356806e-01	ci right 5.373763e-01	k: 713583	n:1330000
KS ci ratio: 1.388991e-01	ci left: 5.569213e-04	ci right 6.407669e-04	k: 795	n:1330000
PPP3CA   1330000 perm   880 sec   (1512 perm/sec)   p_kst 5.977444e-04   p_cons 5.365286e-01   p_joint 9.203008e-04

Joint ci ratio: 1.135846e-01	ci left: 8.376092e-04	ci right 9.391948e-04	k: 1189	n:1340000
Cons ci ratio: 3.148031e-03	ci left: 5.355798e-01	ci right 5.372692e-01	k: 718809	n:1340000
KS ci ratio: 1.381203e-01	ci left: 5.592489e-04	ci right 6.429340e-04	k: 804	n:1340000
PPP3CA   1340000 perm   891 sec   (1504 perm/sec)   p_kst 6.000000e-04   p_cons 5.364246e-01   p_joint 8.873134e-04

Joint ci ratio: 1.132995e-01	ci left: 8.357230e-04	ci right 9.368084e-04	k: 1195	n:1350000
Cons ci ratio: 3.136464e-03	ci left: 5.355650e-01	ci right 5.372482e-01	k: 724149	n:1350000
KS ci ratio: 1.379492e-01	ci left: 5.565366e-04	ci right 6.397043e-04	k: 806	n:1350000
PPP3CA   1350000 perm   902 sec   (1496 perm/sec)   p_kst 5.970370e-04   p_cons 5.364067e-01   p_joint 8.851852e-04

Joint ci ratio: 1.128287e-01	ci left: 8.367230e-04	ci right 9.374809e-04	k: 1205	n:1360000
Cons ci ratio: 3.125346e-03	ci left: 5.354990e-01	ci right 5.371759e-01	k: 729419	n:1360000
KS ci ratio: 1.374393e-01	ci left: 5.567042e-04	ci right 6.395642e-04	k: 812	n:1360000
PPP3CA   1360000 perm   914 sec   (1488 perm/sec)   p_kst 5.970588e-04   p_cons 5.363375e-01   p_joint 8.860294e-04

Joint ci ratio: 1.125492e-01	ci left: 8.348716e-04	ci right 9.351410e-04	k: 1211	n:1370000
Cons ci ratio: 3.113929e-03	ci left: 5.355003e-01	ci right 5.371711e-01	k: 734780	n:1370000
KS ci ratio: 1.370186e-01	ci left: 5.561650e-04	ci right 6.386707e-04	k: 817	n:1370000
PPP3CA   1370000 perm   926 sec   (1480 perm/sec)   p_kst 5.963504e-04   p_cons 5.363358e-01   p_joint 8.839416e-04

Joint ci ratio: 1.121796e-01	ci left: 8.344560e-04	ci right 9.343245e-04	k: 1219	n:1380000
Cons ci ratio: 3.102872e-03	ci left: 5.354639e-01	ci right 5.371287e-01	k: 740089	n:1380000
KS ci ratio: 1.367682e-01	ci left: 5.542342e-04	ci right 6.362910e-04	k: 820	n:1380000
PPP3CA   1380000 perm   937 sec   (1473 perm/sec)   p_kst 5.942029e-04   p_cons 5.362964e-01   p_joint 8.833333e-04

Joint ci ratio: 1.119964e-01	ci left: 8.312496e-04	ci right 9.305612e-04	k: 1223	n:1390000
Cons ci ratio: 3.091579e-03	ci left: 5.354849e-01	ci right 5.371437e-01	k: 745477	n:1390000
KS ci ratio: 1.364363e-01	ci left: 5.530263e-04	ci right 6.346894e-04	k: 824	n:1390000
PPP3CA   1390000 perm   949 sec   (1465 perm/sec)   p_kst 5.928058e-04   p_cons 5.363144e-01   p_joint 8.798561e-04

Joint ci ratio: 1.114964e-01	ci left: 8.329497e-04	ci right 9.319910e-04	k: 1234	n:1400000
Cons ci ratio: 3.080240e-03	ci left: 5.355328e-01	ci right 5.371856e-01	k: 750903	n:1400000
KS ci ratio: 1.357795e-01	ci left: 5.545958e-04	ci right 6.360646e-04	k: 832	n:1400000
PPP3CA   1400000 perm   961 sec   (1458 perm/sec)   p_kst 5.942857e-04   p_cons 5.363593e-01   p_joint 8.814286e-04

Joint ci ratio: 1.110923e-01	ci left: 8.332476e-04	ci right 9.319417e-04	k: 1243	n:1410000
Cons ci ratio: 3.069296e-03	ci left: 5.355360e-01	ci right 5.371830e-01	k: 756267	n:1410000
KS ci ratio: 1.351320e-01	ci left: 5.561440e-04	ci right 6.374194e-04	k: 840	n:1410000
PPP3CA   1410000 perm   972 sec   (1450 perm/sec)   p_kst 5.957447e-04   p_cons 5.363596e-01   p_joint 8.815603e-04

Joint ci ratio: 1.106484e-01	ci left: 8.342266e-04	ci right 9.326162e-04	k: 1253	n:1420000
Cons ci ratio: 3.058069e-03	ci left: 5.356040e-01	ci right 5.372451e-01	k: 761723	n:1420000
KS ci ratio: 1.347322e-01	ci left: 5.556298e-04	ci right 6.365705e-04	k: 845	n:1420000
PPP3CA   1420000 perm   984 sec   (1442 perm/sec)   p_kst 5.950704e-04   p_cons 5.364246e-01   p_joint 8.823944e-04

Joint ci ratio: 1.105165e-01	ci left: 8.304326e-04	ci right 9.282504e-04	k: 1256	n:1430000
Cons ci ratio: 3.047385e-03	ci left: 5.356025e-01	ci right 5.372379e-01	k: 767081	n:1430000
KS ci ratio: 1.344149e-01	ci left: 5.544473e-04	ci right 6.350103e-04	k: 849	n:1430000
PPP3CA   1430000 perm   997 sec   (1435 perm/sec)   p_kst 5.937063e-04   p_cons 5.364203e-01   p_joint 8.783217e-04

Joint ci ratio: 9.961101e-02	ci left: 1.020782e-03	ci right 1.128463e-03	k: 1546	n:1440000
Cons ci ratio: 3.036803e-03	ci left: 5.356025e-01	ci right 5.372321e-01	k: 772441	n:1440000
KS ci ratio: 1.339430e-01	ci left: 5.546238e-04	ci right 6.349069e-04	k: 855	n:1440000
PPP3CA   1440000 perm   1009 sec   (1428 perm/sec)   p_kst 5.937500e-04   p_cons 5.364174e-01   p_joint 1.073611e-03

Joint ci ratio: 9.941857e-02	ci left: 1.017777e-03	ci right 1.124922e-03	k: 1552	n:1450000
Cons ci ratio: 3.026851e-03	ci left: 5.355169e-01	ci right 5.371409e-01	k: 777677	n:1450000
KS ci ratio: 1.337090e-01	ci left: 5.527984e-04	ci right 6.326665e-04	k: 858	n:1450000
PPP3CA   1450000 perm   1021 sec   (1420 perm/sec)   p_kst 5.917241e-04   p_cons 5.363290e-01   p_joint 1.070345e-03

Joint ci ratio: 9.910004e-02	ci left: 1.017485e-03	ci right 1.124236e-03	k: 1562	n:1460000
Cons ci ratio: 3.016402e-03	ci left: 5.355304e-01	ci right 5.371489e-01	k: 783056	n:1460000
KS ci ratio: 1.331675e-01	ci left: 5.536466e-04	ci right 6.332876e-04	k: 865	n:1460000
PPP3CA   1460000 perm   1033 sec   (1413 perm/sec)   p_kst 5.924658e-04   p_cons 5.363397e-01   p_joint 1.069863e-03

Joint ci ratio: 9.872175e-02	ci left: 1.018525e-03	ci right 1.124953e-03	k: 1574	n:1470000
Cons ci ratio: 3.005851e-03	ci left: 5.355785e-01	ci right 5.371914e-01	k: 788486	n:1470000
KS ci ratio: 1.328611e-01	ci left: 5.525108e-04	ci right 6.317912e-04	k: 869	n:1470000
PPP3CA   1470000 perm   1045 sec   (1406 perm/sec)   p_kst 5.911565e-04   p_cons 5.363850e-01   p_joint 1.070748e-03

Joint ci ratio: 9.828578e-02	ci left: 1.020869e-03	ci right 1.127045e-03	k: 1588	n:1480000
Cons ci ratio: 2.995784e-03	ci left: 5.355638e-01	ci right 5.371712e-01	k: 793824	n:1480000
KS ci ratio: 1.321790e-01	ci left: 5.546572e-04	ci right 6.338048e-04	k: 878	n:1480000
PPP3CA   1480000 perm   1058 sec   (1399 perm/sec)   p_kst 5.932432e-04   p_cons 5.363676e-01   p_joint 1.072973e-03

Joint ci ratio: 9.942000e-02	ci left: 9.904531e-04	ci right 1.094723e-03	k: 1552	n:1490000
Cons ci ratio: 2.985902e-03	ci left: 5.355351e-01	ci right 5.371372e-01	k: 799141	n:1490000
KS ci ratio: 1.318794e-01	ci left: 5.535305e-04	ci right 6.323243e-04	k: 882	n:1490000
PPP3CA   1490000 perm   1070 sec   (1393 perm/sec)   p_kst 5.919463e-04   p_cons 5.363362e-01   p_joint 1.041611e-03

Joint ci ratio: 9.929242e-02	ci left: 9.864504e-04	ci right 1.090158e-03	k: 1556	n:1500000
Cons ci ratio: 2.976233e-03	ci left: 5.354876e-01	ci right 5.370843e-01	k: 804429	n:1500000
KS ci ratio: 1.318050e-01	ci left: 5.504849e-04	ci right 6.287975e-04	k: 883	n:1500000
PPP3CA   1500000 perm   1082 sec   (1386 perm/sec)   p_kst 5.886667e-04   p_cons 5.362860e-01   p_joint 1.037333e-03

Joint ci ratio: 9.987233e-02	ci left: 9.682935e-04	ci right 1.070722e-03	k: 1538	n:1510000
Cons ci ratio: 2.966278e-03	ci left: 5.355042e-01	ci right 5.370957e-01	k: 809813	n:1510000
KS ci ratio: 1.314338e-01	ci left: 5.500416e-04	ci right 6.280535e-04	k: 888	n:1510000
PPP3CA   1510000 perm   1095 sec   (1379 perm/sec)   p_kst 5.880795e-04   p_cons 5.363000e-01   p_joint 1.018543e-03

Joint ci ratio: 9.951729e-02	ci left: 9.689796e-04	ci right 1.071095e-03	k: 1549	n:1520000
Cons ci ratio: 2.956536e-03	ci left: 5.355016e-01	ci right 5.370878e-01	k: 815168	n:1520000
KS ci ratio: 1.308463e-01	ci left: 5.515134e-04	ci right 6.293573e-04	k: 896	n:1520000
PPP3CA   1520000 perm   1107 sec   (1373 perm/sec)   p_kst 5.894737e-04   p_cons 5.362947e-01   p_joint 1.019079e-03

Joint ci ratio: 9.916600e-02	ci left: 9.696573e-04	ci right 1.071462e-03	k: 1560	n:1530000
Cons ci ratio: 2.946552e-03	ci left: 5.355558e-01	ci right 5.371368e-01	k: 820610	n:1530000
KS ci ratio: 1.304832e-01	ci left: 5.510699e-04	ci right 6.286186e-04	k: 901	n:1530000
PPP3CA   1530000 perm   1120 sec   (1366 perm/sec)   p_kst 5.888889e-04   p_cons 5.363464e-01   p_joint 1.019608e-03

Joint ci ratio: 1.005293e-01	ci left: 9.367683e-04	ci right 1.036552e-03	k: 1518	n:1540000
Cons ci ratio: 2.936998e-03	ci left: 5.355536e-01	ci right 5.371294e-01	k: 825966	n:1540000
KS ci ratio: 1.299798e-01	ci left: 5.518889e-04	ci right 6.292301e-04	k: 908	n:1540000
PPP3CA   1540000 perm   1133 sec   (1360 perm/sec)   p_kst 5.896104e-04   p_cons 5.363416e-01   p_joint 9.857143e-04

Joint ci ratio: 1.002000e-01	ci left: 9.370143e-04	ci right 1.036478e-03	k: 1528	n:1550000
Cons ci ratio: 2.927571e-03	ci left: 5.355455e-01	ci right 5.371163e-01	k: 831313	n:1550000
KS ci ratio: 1.296238e-01	ci left: 5.514494e-04	ci right 6.285011e-04	k: 913	n:1550000
PPP3CA   1550000 perm   1145 sec   (1353 perm/sec)   p_kst 5.890323e-04   p_cons 5.363310e-01   p_joint 9.858065e-04

Joint ci ratio: 9.971196e-02	ci left: 9.403829e-04	ci right 1.039690e-03	k: 1543	n:1560000
Cons ci ratio: 2.918279e-03	ci left: 5.355299e-01	ci right 5.370956e-01	k: 836648	n:1560000
KS ci ratio: 1.292004e-01	ci left: 5.516361e-04	ci right 6.284428e-04	k: 919	n:1560000
PPP3CA   1560000 perm   1158 sec   (1347 perm/sec)   p_kst 5.891026e-04   p_cons 5.363128e-01   p_joint 9.891026e-04

Joint ci ratio: 1.052857e-01	ci left: 8.357112e-04	ci right 9.292031e-04	k: 1384	n:1570000
Cons ci ratio: 2.909262e-03	ci left: 5.354826e-01	ci right 5.370434e-01	k: 841933	n:1570000
KS ci ratio: 1.285729e-01	ci left: 5.536702e-04	ci right 6.303571e-04	k: 928	n:1570000
PPP3CA   1570000 perm   1171 sec   (1341 perm/sec)   p_kst 5.910828e-04   p_cons 5.362631e-01   p_joint 8.815287e-04

Joint ci ratio: 1.050963e-01	ci left: 8.335031e-04	ci right 9.265699e-04	k: 1389	n:1580000
Cons ci ratio: 2.900283e-03	ci left: 5.354436e-01	ci right 5.369994e-01	k: 847230	n:1580000
KS ci ratio: 1.282971e-01	ci left: 5.526162e-04	ci right 6.289805e-04	k: 932	n:1580000
PPP3CA   1580000 perm   1184 sec   (1334 perm/sec)   p_kst 5.898734e-04   p_cons 5.362215e-01   p_joint 8.791139e-04

Joint ci ratio: 1.048703e-01	ci left: 8.319354e-04	ci right 9.246151e-04	k: 1395	n:1590000
Cons ci ratio: 2.891262e-03	ci left: 5.354264e-01	ci right 5.369773e-01	k: 852561	n:1590000
KS ci ratio: 1.280914e-01	ci left: 5.509669e-04	ci right 6.269720e-04	k: 935	n:1590000
PPP3CA   1590000 perm   1197 sec   (1328 perm/sec)   p_kst 5.880503e-04   p_cons 5.362019e-01   p_joint 8.773585e-04

Joint ci ratio: 1.046084e-01	ci left: 8.309962e-04	ci right 9.233259e-04	k: 1402	n:1600000
Cons ci ratio: 2.882187e-03	ci left: 5.354332e-01	ci right 5.369792e-01	k: 857930	n:1600000
KS ci ratio: 1.277507e-01	ci left: 5.505483e-04	ci right 6.262783e-04	k: 940	n:1600000
PPP3CA   1600000 perm   1211 sec   (1322 perm/sec)   p_kst 5.875000e-04   p_cons 5.362062e-01   p_joint 8.762500e-04

Joint ci ratio: 1.043855e-01	ci left: 8.294640e-04	ci right 9.214150e-04	k: 1408	n:1610000
Cons ci ratio: 2.873406e-03	ci left: 5.354038e-01	ci right 5.369451e-01	k: 863241	n:1610000
KS ci ratio: 1.274127e-01	ci left: 5.501352e-04	ci right 6.255931e-04	k: 945	n:1610000
PPP3CA   1610000 perm   1224 sec   (1315 perm/sec)   p_kst 5.869565e-04   p_cons 5.361745e-01   p_joint 8.745342e-04

Joint ci ratio: 1.042009e-01	ci left: 8.273497e-04	ci right 9.188942e-04	k: 1413	n:1620000
Cons ci ratio: 2.864430e-03	ci left: 5.354224e-01	ci right 5.369589e-01	k: 868629	n:1620000
KS ci ratio: 1.272113e-01	ci left: 5.485322e-04	ci right 6.236422e-04	k: 948	n:1620000
PPP3CA   1620000 perm   1237 sec   (1309 perm/sec)   p_kst 5.851852e-04   p_cons 5.361907e-01   p_joint 8.722222e-04

Joint ci ratio: 1.039806e-01	ci left: 8.258591e-04	ci right 9.170337e-04	k: 1419	n:1630000
Cons ci ratio: 2.855404e-03	ci left: 5.354641e-01	ci right 5.369959e-01	k: 874055	n:1630000
KS ci ratio: 1.268775e-01	ci left: 5.481370e-04	ci right 6.229811e-04	k: 953	n:1630000
PPP3CA   1630000 perm   1251 sec   (1303 perm/sec)   p_kst 5.846626e-04   p_cons 5.362301e-01   p_joint 8.705521e-04

Joint ci ratio: 1.036527e-01	ci left: 8.261687e-04	ci right 9.170722e-04	k: 1428	n:1640000
Cons ci ratio: 2.846477e-03	ci left: 5.355029e-01	ci right 5.370299e-01	k: 879477	n:1640000
KS ci ratio: 1.263488e-01	ci left: 5.495182e-04	ci right 6.242149e-04	k: 961	n:1640000
PPP3CA   1640000 perm   1264 sec   (1297 perm/sec)   p_kst 5.859756e-04   p_cons 5.362665e-01   p_joint 8.707317e-04

Joint ci ratio: 9.792182e-02	ci left: 9.227807e-04	ci right 1.018379e-03	k: 1600	n:1650000
Cons ci ratio: 2.837640e-03	ci left: 5.355399e-01	ci right 5.370624e-01	k: 884897	n:1650000
KS ci ratio: 1.258266e-01	ci left: 5.508834e-04	ci right 6.254331e-04	k: 969	n:1650000
PPP3CA   1650000 perm   1278 sec   (1292 perm/sec)   p_kst 5.872727e-04   p_cons 5.363012e-01   p_joint 9.696970e-04

Joint ci ratio: 9.779989e-02	ci left: 9.195724e-04	ci right 1.014713e-03	k: 1604	n:1660000
Cons ci ratio: 2.829382e-03	ci left: 5.354892e-01	ci right 5.370070e-01	k: 890172	n:1660000
KS ci ratio: 1.258268e-01	ci left: 5.475648e-04	ci right 6.216655e-04	k: 969	n:1660000
PPP3CA   1660000 perm   1291 sec   (1286 perm/sec)   p_kst 5.837349e-04   p_cons 5.362482e-01   p_joint 9.662651e-04

Joint ci ratio: 9.755711e-02	ci left: 9.187393e-04	ci right 1.013544e-03	k: 1612	n:1670000
Cons ci ratio: 2.820607e-03	ci left: 5.355427e-01	ci right 5.370560e-01	k: 895620	n:1670000
KS ci ratio: 1.254394e-01	ci left: 5.477658e-04	ci right 6.216486e-04	k: 975	n:1670000
PPP3CA   1670000 perm   1305 sec   (1280 perm/sec)   p_kst 5.838323e-04   p_cons 5.362994e-01   p_joint 9.652695e-04

Joint ci ratio: 9.728609e-02	ci left: 9.184972e-04	ci right 1.012999e-03	k: 1621	n:1680000
Cons ci ratio: 2.812274e-03	ci left: 5.355319e-01	ci right 5.370406e-01	k: 900961	n:1680000
KS ci ratio: 1.250556e-01	ci left: 5.479649e-04	ci right 6.216316e-04	k: 981	n:1680000
PPP3CA   1680000 perm   1318 sec   (1274 perm/sec)   p_kst 5.839286e-04   p_cons 5.362863e-01   p_joint 9.648810e-04

Joint ci ratio: 9.698757e-02	ci left: 9.188358e-04	ci right 1.013065e-03	k: 1631	n:1690000
Cons ci ratio: 2.803844e-03	ci left: 5.355514e-01	ci right 5.370556e-01	k: 906353	n:1690000
KS ci ratio: 1.246753e-01	ci left: 5.481619e-04	ci right 6.216144e-04	k: 987	n:1690000
PPP3CA   1690000 perm   1332 sec   (1269 perm/sec)   p_kst 5.840237e-04   p_cons 5.363036e-01   p_joint 9.650888e-04

Joint ci ratio: 1.030426e-01	ci left: 8.067509e-04	ci right 8.949639e-04	k: 1445	n:1700000
Cons ci ratio: 2.795566e-03	ci left: 5.355571e-01	ci right 5.370569e-01	k: 911722	n:1700000
KS ci ratio: 1.242985e-01	ci left: 5.483569e-04	ci right 6.215971e-04	k: 993	n:1700000
PPP3CA   1700000 perm   1346 sec   (1263 perm/sec)   p_kst 5.841176e-04   p_cons 5.363071e-01   p_joint 8.500000e-04

Joint ci ratio: 1.027942e-01	ci left: 8.060212e-04	ci right 8.939291e-04	k: 1452	n:1710000
Cons ci ratio: 2.787075e-03	ci left: 5.356136e-01	ci right 5.371091e-01	k: 917178	n:1710000
KS ci ratio: 1.239870e-01	ci left: 5.479833e-04	ci right 6.209768e-04	k: 998	n:1710000
PPP3CA   1710000 perm   1360 sec   (1257 perm/sec)   p_kst 5.836257e-04   p_cons 5.363614e-01   p_joint 8.491228e-04

Joint ci ratio: 1.024072e-01	ci left: 8.075663e-04	ci right 8.952912e-04	k: 1463	n:1720000
Cons ci ratio: 2.778879e-03	ci left: 5.356306e-01	ci right 5.371216e-01	k: 922567	n:1720000
KS ci ratio: 1.234322e-01	ci left: 5.498680e-04	ci right 6.227608e-04	k: 1007	n:1720000
PPP3CA   1720000 perm   1374 sec   (1252 perm/sec)   p_kst 5.854651e-04   p_cons 5.363762e-01   p_joint 8.505814e-04

Joint ci ratio: 1.020592e-01	ci left: 8.085309e-04	ci right 8.960441e-04	k: 1473	n:1730000
Cons ci ratio: 2.770954e-03	ci left: 5.356115e-01	ci right 5.370982e-01	k: 927894	n:1730000
KS ci ratio: 1.229452e-01	ci left: 5.511714e-04	ci right 6.239277e-04	k: 1015	n:1730000
PPP3CA   1730000 perm   1388 sec   (1246 perm/sec)   p_kst 5.867052e-04   p_cons 5.363549e-01   p_joint 8.514451e-04

Joint ci ratio: 1.016804e-01	ci left: 8.100450e-04	ci right 8.973773e-04	k: 1484	n:1740000
Cons ci ratio: 2.762976e-03	ci left: 5.356144e-01	ci right 5.370969e-01	k: 933259	n:1740000
KS ci ratio: 1.224639e-01	ci left: 5.524604e-04	ci right 6.250807e-04	k: 1023	n:1740000
PPP3CA   1740000 perm   1402 sec   (1241 perm/sec)   p_kst 5.879310e-04   p_cons 5.363557e-01   p_joint 8.528736e-04

Joint ci ratio: 9.409058e-02	ci left: 9.442268e-04	ci right 1.038009e-03	k: 1733	n:1750000
Cons ci ratio: 2.755056e-03	ci left: 5.356191e-01	ci right 5.370973e-01	k: 938627	n:1750000
KS ci ratio: 1.218701e-01	ci left: 5.548431e-04	ci right 6.273975e-04	k: 1033	n:1750000
PPP3CA   1750000 perm   1417 sec   (1235 perm/sec)   p_kst 5.902857e-04   p_cons 5.363583e-01   p_joint 9.902857e-04

Joint ci ratio: 9.690033e-02	ci left: 8.839536e-04	ci right 9.745197e-04	k: 1634	n:1760000
Cons ci ratio: 2.747459e-03	ci left: 5.355777e-01	ci right 5.370517e-01	k: 943914	n:1760000
KS ci ratio: 1.215766e-01	ci left: 5.544450e-04	ci right 6.267602e-04	k: 1038	n:1760000
PPP3CA   1760000 perm   1431 sec   (1230 perm/sec)   p_kst 5.897727e-04   p_cons 5.363148e-01   p_joint 9.284091e-04

Joint ci ratio: 9.657595e-02	ci left: 8.850239e-04	ci right 9.753789e-04	k: 1645	n:1770000
Cons ci ratio: 2.739491e-03	ci left: 5.356153e-01	ci right 5.370852e-01	k: 949340	n:1770000
KS ci ratio: 1.211691e-01	ci left: 5.551473e-04	ci right 6.272939e-04	k: 1045	n:1770000
PPP3CA   1770000 perm   1445 sec   (1225 perm/sec)   p_kst 5.903955e-04   p_cons 5.363503e-01   p_joint 9.293785e-04

Joint ci ratio: 9.637131e-02	ci left: 8.838895e-04	ci right 9.739267e-04	k: 1652	n:1780000
Cons ci ratio: 2.731681e-03	ci left: 5.356362e-01	ci right 5.371019e-01	k: 954737	n:1780000
KS ci ratio: 1.208230e-01	ci left: 5.552973e-04	ci right 6.272426e-04	k: 1051	n:1780000
PPP3CA   1780000 perm   1460 sec   (1220 perm/sec)   p_kst 5.904494e-04   p_cons 5.363691e-01   p_joint 9.280899e-04

Joint ci ratio: 9.625506e-02	ci left: 8.811323e-04	ci right 9.707743e-04	k: 1656	n:1790000
Cons ci ratio: 2.724042e-03	ci left: 5.356378e-01	ci right 5.370995e-01	k: 960100	n:1790000
KS ci ratio: 1.206512e-01	ci left: 5.538204e-04	ci right 6.254650e-04	k: 1054	n:1790000
PPP3CA   1790000 perm   1474 sec   (1214 perm/sec)   p_kst 5.888268e-04   p_cons 5.363687e-01   p_joint 9.251397e-04

Joint ci ratio: 9.611028e-02	ci left: 8.789481e-04	ci right 9.682258e-04	k: 1661	n:1800000
Cons ci ratio: 2.716567e-03	ci left: 5.356212e-01	ci right 5.370787e-01	k: 965430	n:1800000
KS ci ratio: 1.204801e-01	ci left: 5.523600e-04	ci right 6.237072e-04	k: 1057	n:1800000
PPP3CA   1800000 perm   1488 sec   (1209 perm/sec)   p_kst 5.872222e-04   p_cons 5.363500e-01   p_joint 9.227778e-04

Joint ci ratio: 9.587983e-02	ci left: 8.784058e-04	ci right 9.674024e-04	k: 1669	n:1810000
Cons ci ratio: 2.709226e-03	ci left: 5.355914e-01	ci right 5.370449e-01	k: 970736	n:1810000
KS ci ratio: 1.200835e-01	ci left: 5.530593e-04	ci right 6.242450e-04	k: 1064	n:1810000
PPP3CA   1810000 perm   1503 sec   (1204 perm/sec)   p_kst 5.878453e-04   p_cons 5.363182e-01   p_joint 9.220994e-04

Joint ci ratio: 9.565103e-02	ci left: 8.778697e-04	ci right 9.665879e-04	k: 1677	n:1820000
Cons ci ratio: 2.701830e-03	ci left: 5.355829e-01	ci right 5.370324e-01	k: 976080	n:1820000
KS ci ratio: 1.197467e-01	ci left: 5.532184e-04	ci right 6.242106e-04	k: 1070	n:1820000
PPP3CA   1820000 perm   1518 sec   (1199 perm/sec)   p_kst 5.879121e-04   p_cons 5.363077e-01   p_joint 9.214286e-04

Joint ci ratio: 9.545220e-02	ci left: 8.768063e-04	ci right 9.652225e-04	k: 1684	n:1830000
Cons ci ratio: 2.694299e-03	ci left: 5.356105e-01	ci right 5.370561e-01	k: 981490	n:1830000
KS ci ratio: 1.195794e-01	ci left: 5.517856e-04	ci right 6.224880e-04	k: 1073	n:1830000
PPP3CA   1830000 perm   1532 sec   (1194 perm/sec)   p_kst 5.863388e-04   p_cons 5.363333e-01   p_joint 9.202186e-04

Joint ci ratio: 9.522645e-02	ci left: 8.762852e-04	ci right 9.644282e-04	k: 1692	n:1840000
Cons ci ratio: 2.687053e-03	ci left: 5.355965e-01	ci right 5.370381e-01	k: 986824	n:1840000
KS ci ratio: 1.193020e-01	ci left: 5.514229e-04	ci right 6.219035e-04	k: 1078	n:1840000
PPP3CA   1840000 perm   1547 sec   (1189 perm/sec)   p_kst 5.858696e-04   p_cons 5.363174e-01   p_joint 9.195652e-04

Joint ci ratio: 9.480723e-02	ci left: 8.794640e-04	ci right 9.675157e-04	k: 1707	n:1850000
Cons ci ratio: 2.679758e-03	ci left: 5.356027e-01	ci right 5.370404e-01	k: 992195	n:1850000
KS ci ratio: 1.188621e-01	ci left: 5.526378e-04	ci right 6.229949e-04	k: 1086	n:1850000
PPP3CA   1850000 perm   1562 sec   (1184 perm/sec)   p_kst 5.870270e-04   p_cons 5.363216e-01   p_joint 9.227027e-04

Joint ci ratio: 9.533972e-02	ci left: 8.647632e-04	ci right 9.518565e-04	k: 1688	n:1860000
Cons ci ratio: 2.672589e-03	ci left: 5.355965e-01	ci right 5.370303e-01	k: 997543	n:1860000
KS ci ratio: 1.184812e-01	ci left: 5.533184e-04	ci right 6.235205e-04	k: 1093	n:1860000
PPP3CA   1860000 perm   1577 sec   (1180 perm/sec)   p_kst 5.876344e-04   p_cons 5.363134e-01   p_joint 9.075269e-04

Joint ci ratio: 7.973276e-02	ci left: 1.239428e-03	ci right 1.342875e-03	k: 2413	n:1870000
Cons ci ratio: 2.665385e-03	ci left: 5.356074e-01	ci right 5.370374e-01	k: 1002923	n:1870000
KS ci ratio: 1.179968e-01	ci left: 5.550300e-04	ci right 6.251413e-04	k: 1102	n:1870000
PPP3CA   1870000 perm   1592 sec   (1175 perm/sec)   p_kst 5.893048e-04   p_cons 5.363225e-01   p_joint 1.290374e-03

Joint ci ratio: 8.512913e-02	ci left: 1.078627e-03	ci right 1.175048e-03	k: 2117	n:1880000
Cons ci ratio: 2.658174e-03	ci left: 5.356305e-01	ci right 5.370567e-01	k: 1008326	n:1880000
KS ci ratio: 1.174126e-01	ci left: 5.577565e-04	ci right 6.278393e-04	k: 1113	n:1880000
PPP3CA   1880000 perm   1607 sec   (1170 perm/sec)   p_kst 5.920213e-04   p_cons 5.363436e-01   p_joint 1.126064e-03

Joint ci ratio: 8.496889e-02	ci left: 1.077063e-03	ci right 1.173154e-03	k: 2125	n:1890000
Cons ci ratio: 2.651173e-03	ci left: 5.356247e-01	ci right 5.370471e-01	k: 1013675	n:1890000
KS ci ratio: 1.171500e-01	ci left: 5.573733e-04	ci right 6.272404e-04	k: 1118	n:1890000
PPP3CA   1890000 perm   1622 sec   (1165 perm/sec)   p_kst 5.915344e-04   p_cons 5.363360e-01   p_joint 1.124339e-03

Joint ci ratio: 8.473008e-02	ci left: 1.077576e-03	ci right 1.173429e-03	k: 2137	n:1900000
Cons ci ratio: 2.644404e-03	ci left: 5.355859e-01	ci right 5.370045e-01	k: 1018961	n:1900000
KS ci ratio: 1.167853e-01	ci left: 5.580162e-04	ci right 6.277311e-04	k: 1125	n:1900000
PPP3CA   1900000 perm   1637 sec   (1161 perm/sec)   p_kst 5.921053e-04   p_cons 5.362953e-01   p_joint 1.124737e-03

Joint ci ratio: 8.455235e-02	ci left: 1.076546e-03	ci right 1.172097e-03	k: 2146	n:1910000
Cons ci ratio: 2.637458e-03	ci left: 5.355904e-01	ci right 5.370053e-01	k: 1024329	n:1910000
KS ci ratio: 1.165269e-01	ci left: 5.576361e-04	ci right 6.271387e-04	k: 1130	n:1910000
PPP3CA   1910000 perm   1652 sec   (1156 perm/sec)   p_kst 5.916230e-04   p_cons 5.362979e-01   p_joint 1.123560e-03

Joint ci ratio: 8.584314e-02	ci left: 1.038315e-03	ci right 1.131950e-03	k: 2082	n:1920000
Cons ci ratio: 2.630848e-03	ci left: 5.355417e-01	ci right 5.369530e-01	k: 1029595	n:1920000
KS ci ratio: 1.162190e-01	ci left: 5.577658e-04	ci right 6.270883e-04	k: 1136	n:1920000
PPP3CA   1920000 perm   1667 sec   (1152 perm/sec)   p_kst 5.916667e-04   p_cons 5.362474e-01   p_joint 1.084375e-03

Joint ci ratio: 8.561737e-02	ci left: 1.038513e-03	ci right 1.131907e-03	k: 2093	n:1930000
Cons ci ratio: 2.624027e-03	ci left: 5.355428e-01	ci right 5.369504e-01	k: 1034956	n:1930000
KS ci ratio: 1.159643e-01	ci left: 5.573912e-04	ci right 6.265050e-04	k: 1141	n:1930000
PPP3CA   1930000 perm   1683 sec   (1147 perm/sec)   p_kst 5.911917e-04   p_cons 5.362466e-01   p_joint 1.084456e-03

Joint ci ratio: 8.541368e-02	ci left: 1.038204e-03	ci right 1.131337e-03	k: 2103	n:1940000
Cons ci ratio: 2.617197e-03	ci left: 5.355557e-01	ci right 5.369597e-01	k: 1040340	n:1940000
KS ci ratio: 1.158124e-01	ci left: 5.560196e-04	ci right 6.248668e-04	k: 1144	n:1940000
PPP3CA   1940000 perm   1698 sec   (1142 perm/sec)   p_kst 5.896907e-04   p_cons 5.362577e-01   p_joint 1.084021e-03

Joint ci ratio: 8.609247e-02	ci left: 1.016319e-03	ci right 1.108250e-03	k: 2070	n:1950000
Cons ci ratio: 2.610366e-03	ci left: 5.355787e-01	ci right 5.369791e-01	k: 1045744	n:1950000
KS ci ratio: 1.156107e-01	ci left: 5.551601e-04	ci right 6.237730e-04	k: 1148	n:1950000
PPP3CA   1950000 perm   1714 sec   (1138 perm/sec)   p_kst 5.887179e-04   p_cons 5.362790e-01   p_joint 1.061538e-03

Joint ci ratio: 8.567955e-02	ci left: 1.021119e-03	ci right 1.113019e-03	k: 2090	n:1960000
Cons ci ratio: 2.603538e-03	ci left: 5.356112e-01	ci right 5.370080e-01	k: 1051167	n:1960000
KS ci ratio: 1.151107e-01	ci left: 5.572825e-04	ci right 6.258397e-04	k: 1158	n:1960000
PPP3CA   1960000 perm   1730 sec   (1133 perm/sec)   p_kst 5.908163e-04   p_cons 5.363097e-01   p_joint 1.066327e-03

Joint ci ratio: 8.539408e-02	ci left: 1.022890e-03	ci right 1.114627e-03	k: 2104	n:1970000
Cons ci ratio: 2.596811e-03	ci left: 5.356343e-01	ci right 5.370275e-01	k: 1056572	n:1970000
KS ci ratio: 1.148633e-01	ci left: 5.569188e-04	ci right 6.252739e-04	k: 1163	n:1970000
PPP3CA   1970000 perm   1745 sec   (1129 perm/sec)   p_kst 5.903553e-04   p_cons 5.363310e-01   p_joint 1.068020e-03

Joint ci ratio: 8.515168e-02	ci left: 1.023655e-03	ci right 1.115188e-03	k: 2116	n:1980000
Cons ci ratio: 2.590530e-03	ci left: 5.355814e-01	ci right 5.369711e-01	k: 1061827	n:1980000
KS ci ratio: 1.146174e-01	ci left: 5.565588e-04	ci right 6.247136e-04	k: 1168	n:1980000
PPP3CA   1980000 perm   1761 sec   (1124 perm/sec)   p_kst 5.898990e-04   p_cons 5.362763e-01   p_joint 1.068687e-03

Joint ci ratio: 8.489138e-02	ci left: 1.024905e-03	ci right 1.116255e-03	k: 2129	n:1990000
Cons ci ratio: 2.583863e-03	ci left: 5.356119e-01	ci right 5.369981e-01	k: 1067247	n:1990000
KS ci ratio: 1.143244e-01	ci left: 5.566908e-04	ci right 6.246757e-04	k: 1174	n:1990000
PPP3CA   1990000 perm   1777 sec   (1120 perm/sec)   p_kst 5.899497e-04   p_cons 5.363050e-01   p_joint 1.069849e-03

Joint ci ratio: 8.469282e-02	ci left: 1.024675e-03	ci right 1.115780e-03	k: 2139	n:2000000
Cons ci ratio: 2.577383e-03	ci left: 5.356161e-01	ci right 5.369988e-01	k: 1072615	n:2000000
KS ci ratio: 1.139853e-01	ci left: 5.573074e-04	ci right 6.251522e-04	k: 1181	n:2000000
PPP3CA   2000000 perm   1793 sec   (1115 perm/sec)   p_kst 5.905000e-04   p_cons 5.363075e-01   p_joint 1.069500e-03

Joint ci ratio: 8.451532e-02	ci left: 1.023960e-03	ci right 1.114801e-03	k: 2148	n:2010000
Cons ci ratio: 2.570863e-03	ci left: 5.356372e-01	ci right 5.370165e-01	k: 1078017	n:2010000
KS ci ratio: 1.136971e-01	ci left: 5.574348e-04	ci right 6.251120e-04	k: 1187	n:2010000
PPP3CA   2010000 perm   1809 sec   (1111 perm/sec)   p_kst 5.905473e-04   p_cons 5.363269e-01   p_joint 1.068657e-03

Joint ci ratio: 8.224787e-02	ci left: 1.077059e-03	ci right 1.169925e-03	k: 2268	n:2020000
Cons ci ratio: 2.564676e-03	ci left: 5.356031e-01	ci right 5.369790e-01	k: 1083308	n:2020000
KS ci ratio: 1.134111e-01	ci left: 5.575612e-04	ci right 6.250720e-04	k: 1193	n:2020000
PPP3CA   2020000 perm   1825 sec   (1107 perm/sec)   p_kst 5.905941e-04   p_cons 5.362911e-01   p_joint 1.122772e-03

Joint ci ratio: 8.212138e-02	ci left: 1.075131e-03	ci right 1.167681e-03	k: 2275	n:2030000
Cons ci ratio: 2.558658e-03	ci left: 5.355452e-01	ci right 5.369177e-01	k: 1088550	n:2030000
KS ci ratio: 1.133637e-01	ci left: 5.552932e-04	ci right 6.224995e-04	k: 1194	n:2030000
PPP3CA   2030000 perm   1841 sec   (1103 perm/sec)   p_kst 5.881773e-04   p_cons 5.362315e-01   p_joint 1.120690e-03

Joint ci ratio: 8.190573e-02	ci left: 1.075622e-03	ci right 1.167960e-03	k: 2287	n:2040000
Cons ci ratio: 2.552334e-03	ci left: 5.355556e-01	ci right 5.369247e-01	k: 1093930	n:2040000
KS ci ratio: 1.130331e-01	ci left: 5.559054e-04	ci right 6.229765e-04	k: 1201	n:2040000
PPP3CA   2040000 perm   1858 sec   (1098 perm/sec)   p_kst 5.887255e-04   p_cons 5.362402e-01   p_joint 1.121078e-03

Joint ci ratio: 8.174515e-02	ci left: 1.074676e-03	ci right 1.166743e-03	k: 2296	n:2050000
Cons ci ratio: 2.546000e-03	ci left: 5.355771e-01	ci right 5.369428e-01	k: 1099333	n:2050000
KS ci ratio: 1.127054e-01	ci left: 5.565119e-04	ci right 6.234486e-04	k: 1208	n:2050000
PPP3CA   2050000 perm   1874 sec   (1094 perm/sec)   p_kst 5.892683e-04   p_cons 5.362600e-01   p_joint 1.120000e-03

Joint ci ratio: 8.221250e-02	ci left: 1.057096e-03	ci right 1.148199e-03	k: 2270	n:2060000
Cons ci ratio: 2.539802e-03	ci left: 5.355809e-01	ci right 5.369433e-01	k: 1104700	n:2060000
KS ci ratio: 1.125659e-01	ci left: 5.552256e-04	ci right 6.219195e-04	k: 1211	n:2060000
PPP3CA   2060000 perm   1890 sec   (1090 perm/sec)   p_kst 5.878641e-04   p_cons 5.362621e-01   p_joint 1.101942e-03

Joint ci ratio: 8.205012e-02	ci left: 1.056248e-03	ci right 1.147090e-03	k: 2279	n:2070000
Cons ci ratio: 2.533888e-03	ci left: 5.355378e-01	ci right 5.368969e-01	k: 1109970	n:2070000
KS ci ratio: 1.122883e-01	ci left: 5.553604e-04	ci right 6.218951e-04	k: 1217	n:2070000
PPP3CA   2070000 perm   1907 sec   (1086 perm/sec)   p_kst 5.879227e-04   p_cons 5.362174e-01   p_joint 1.100966e-03

Joint ci ratio: 8.179931e-02	ci left: 1.057762e-03	ci right 1.148443e-03	k: 2293	n:2080000
Cons ci ratio: 2.527775e-03	ci left: 5.355422e-01	ci right 5.368981e-01	k: 1115338	n:2080000
KS ci ratio: 1.120127e-01	ci left: 5.554941e-04	ci right 6.218707e-04	k: 1223	n:2080000
PPP3CA   2080000 perm   1923 sec   (1081 perm/sec)   p_kst 5.879808e-04   p_cons 5.362202e-01   p_joint 1.102404e-03

Joint ci ratio: 8.163936e-02	ci left: 1.056920e-03	ci right 1.147343e-03	k: 2302	n:2090000
Cons ci ratio: 2.521571e-03	ci left: 5.355734e-01	ci right 5.369260e-01	k: 1120762	n:2090000
KS ci ratio: 1.118302e-01	ci left: 5.546966e-04	ci right 6.208627e-04	k: 1227	n:2090000
PPP3CA   2090000 perm   1940 sec   (1077 perm/sec)   p_kst 5.870813e-04   p_cons 5.362498e-01   p_joint 1.101435e-03

Joint ci ratio: 8.237694e-02	ci left: 1.032763e-03	ci right 1.121956e-03	k: 2261	n:2100000
Cons ci ratio: 2.515482e-03	ci left: 5.355905e-01	ci right 5.369399e-01	k: 1126157	n:2100000
KS ci ratio: 1.116033e-01	ci left: 5.543696e-04	ci right 6.203536e-04	k: 1232	n:2100000
PPP3CA   2100000 perm   1956 sec   (1073 perm/sec)   p_kst 5.866667e-04   p_cons 5.362652e-01   p_joint 1.076667e-03

Joint ci ratio: 8.336057e-02	ci left: 1.003269e-03	ci right 1.091000e-03	k: 2208	n:2110000
Cons ci ratio: 2.509475e-03	ci left: 5.355998e-01	ci right 5.369460e-01	k: 1131536	n:2110000
KS ci ratio: 1.111533e-01	ci left: 5.563496e-04	ci right 6.222848e-04	k: 1242	n:2110000
PPP3CA   2110000 perm   1973 sec   (1069 perm/sec)   p_kst 5.886256e-04   p_cons 5.362730e-01   p_joint 1.046445e-03

Joint ci ratio: 8.326649e-02	ci left: 1.000846e-03	ci right 1.088262e-03	k: 2213	n:2120000
Cons ci ratio: 2.503484e-03	ci left: 5.356143e-01	ci right 5.369573e-01	k: 1136926	n:2120000
KS ci ratio: 1.110195e-01	ci left: 5.551010e-04	ci right 6.208040e-04	k: 1245	n:2120000
PPP3CA   2120000 perm   1990 sec   (1065 perm/sec)   p_kst 5.872642e-04   p_cons 5.362858e-01   p_joint 1.043868e-03

Joint ci ratio: 8.306040e-02	ci left: 1.001204e-03	ci right 1.088424e-03	k: 2224	n:2130000
Cons ci ratio: 2.497721e-03	ci left: 5.355920e-01	ci right 5.369319e-01	k: 1142238	n:2130000
KS ci ratio: 1.108418e-01	ci left: 5.543207e-04	ci right 6.198194e-04	k: 1249	n:2130000
PPP3CA   2130000 perm   2007 sec   (1061 perm/sec)   p_kst 5.863850e-04   p_cons 5.362620e-01   p_joint 1.044131e-03

Joint ci ratio: 8.293012e-02	ci left: 9.997291e-04	ci right 1.086677e-03	k: 2231	n:2140000
Cons ci ratio: 2.491882e-03	ci left: 5.355928e-01	ci right 5.369295e-01	k: 1147599	n:2140000
KS ci ratio: 1.106649e-01	ci left: 5.535478e-04	ci right 6.188440e-04	k: 1253	n:2140000
PPP3CA   2140000 perm   2023 sec   (1058 perm/sec)   p_kst 5.855140e-04   p_cons 5.362612e-01   p_joint 1.042523e-03

Joint ci ratio: 8.278194e-02	ci left: 9.987230e-04	ci right 1.085421e-03	k: 2239	n:2150000
Cons ci ratio: 2.485991e-03	ci left: 5.356122e-01	ci right 5.369458e-01	k: 1153000	n:2150000
KS ci ratio: 1.105769e-01	ci left: 5.518776e-04	ci right 6.169216e-04	k: 1255	n:2150000
PPP3CA   2150000 perm   2040 sec   (1054 perm/sec)   p_kst 5.837209e-04   p_cons 5.362791e-01   p_joint 1.041395e-03

Joint ci ratio: 8.256106e-02	ci left: 9.995400e-04	ci right 1.086066e-03	k: 2251	n:2160000
Cons ci ratio: 2.480086e-03	ci left: 5.356426e-01	ci right 5.369731e-01	k: 1158425	n:2160000
KS ci ratio: 1.103137e-01	ci left: 5.520237e-04	ci right 6.169200e-04	k: 1261	n:2160000
PPP3CA   2160000 perm   2057 sec   (1050 perm/sec)   p_kst 5.837963e-04   p_cons 5.363079e-01   p_joint 1.042130e-03

Joint ci ratio: 8.236015e-02	ci left: 9.998984e-04	ci right 1.086235e-03	k: 2262	n:2170000
Cons ci ratio: 2.474411e-03	ci left: 5.356348e-01	ci right 5.369623e-01	k: 1163768	n:2170000
KS ci ratio: 1.101393e-01	ci left: 5.512723e-04	ci right 6.159712e-04	k: 1265	n:2170000
PPP3CA   2170000 perm   2074 sec   (1046 perm/sec)   p_kst 5.829493e-04   p_cons 5.362986e-01   p_joint 1.042396e-03

Joint ci ratio: 8.221500e-02	ci left: 9.989059e-04	ci right 1.084997e-03	k: 2270	n:2180000
Cons ci ratio: 2.468718e-03	ci left: 5.356387e-01	ci right 5.369631e-01	k: 1169136	n:2180000
KS ci ratio: 1.099658e-01	ci left: 5.505279e-04	ci right 6.150310e-04	k: 1269	n:2180000
PPP3CA   2180000 perm   2091 sec   (1042 perm/sec)   p_kst 5.821101e-04   p_cons 5.363009e-01   p_joint 1.041284e-03

Joint ci ratio: 8.199862e-02	ci left: 9.997117e-04	ci right 1.085635e-03	k: 2282	n:2190000
Cons ci ratio: 2.462905e-03	ci left: 5.356744e-01	ci right 5.369958e-01	k: 1174574	n:2190000
KS ci ratio: 1.096210e-01	ci left: 5.515667e-04	ci right 6.159758e-04	k: 1277	n:2190000
PPP3CA   2190000 perm   2108 sec   (1039 perm/sec)   p_kst 5.831050e-04   p_cons 5.363352e-01   p_joint 1.042009e-03

Joint ci ratio: 8.326807e-02	ci left: 9.644512e-04	ci right 1.048689e-03	k: 2213	n:2200000
Cons ci ratio: 2.457228e-03	ci left: 5.356908e-01	ci right 5.370091e-01	k: 1179970	n:2200000
KS ci ratio: 1.093646e-01	ci left: 5.517122e-04	ci right 6.159779e-04	k: 1283	n:2200000
PPP3CA   2200000 perm   2126 sec   (1035 perm/sec)   p_kst 5.831818e-04   p_cons 5.363500e-01   p_joint 1.005909e-03

Joint ci ratio: 8.313681e-02	ci left: 9.631887e-04	ci right 1.047177e-03	k: 2220	n:2210000
Cons ci ratio: 2.451626e-03	ci left: 5.356997e-01	ci right 5.370151e-01	k: 1185350	n:2210000
KS ci ratio: 1.091947e-01	ci left: 5.509762e-04	ci right 6.150501e-04	k: 1287	n:2210000
PPP3CA   2210000 perm   2143 sec   (1031 perm/sec)   p_kst 5.823529e-04   p_cons 5.363575e-01   p_joint 1.004525e-03

Joint ci ratio: 8.302482e-02	ci left: 9.614965e-04	ci right 1.045219e-03	k: 2226	n:2220000
Cons ci ratio: 2.446225e-03	ci left: 5.356753e-01	ci right 5.369877e-01	k: 1190656	n:2220000
KS ci ratio: 1.090678e-01	ci left: 5.498088e-04	ci right 6.136678e-04	k: 1290	n:2220000
PPP3CA   2220000 perm   2161 sec   (1027 perm/sec)   p_kst 5.810811e-04   p_cons 5.363315e-01   p_joint 1.002703e-03

Joint ci ratio: 8.289470e-02	ci left: 9.602587e-04	ci right 1.043736e-03	k: 2233	n:2230000
Cons ci ratio: 2.440777e-03	ci left: 5.356681e-01	ci right 5.369776e-01	k: 1196000	n:2230000
KS ci ratio: 1.088572e-01	ci left: 5.495243e-04	ci right 6.132192e-04	k: 1295	n:2230000
PPP3CA   2230000 perm   2179 sec   (1024 perm/sec)   p_kst 5.807175e-04   p_cons 5.363229e-01   p_joint 1.001345e-03

Joint ci ratio: 8.270979e-02	ci left: 9.603437e-04	ci right 1.043634e-03	k: 2243	n:2240000
Cons ci ratio: 2.435441e-03	ci left: 5.356453e-01	ci right 5.369519e-01	k: 1201309	n:2240000
KS ci ratio: 1.085227e-01	ci left: 5.505454e-04	ci right 6.141501e-04	k: 1303	n:2240000
PPP3CA   2240000 perm   2196 sec   (1020 perm/sec)   p_kst 5.816964e-04   p_cons 5.362987e-01   p_joint 1.001339e-03

Joint ci ratio: 8.252611e-02	ci left: 9.604281e-04	ci right 1.043531e-03	k: 2253	n:2250000
Cons ci ratio: 2.430027e-03	ci left: 5.356459e-01	ci right 5.369496e-01	k: 1206670	n:2250000
KS ci ratio: 1.083153e-01	ci left: 5.502605e-04	ci right 6.137030e-04	k: 1308	n:2250000
PPP3CA   2250000 perm   2214 sec   (1016 perm/sec)   p_kst 5.813333e-04   p_cons 5.362978e-01   p_joint 1.001333e-03

Joint ci ratio: 8.243482e-02	ci left: 9.583452e-04	ci right 1.041172e-03	k: 2258	n:2260000
Cons ci ratio: 2.424537e-03	ci left: 5.356695e-01	ci right 5.369702e-01	k: 1212083	n:2260000
KS ci ratio: 1.081915e-01	ci left: 5.491172e-04	ci right 6.123509e-04	k: 1311	n:2260000
PPP3CA   2260000 perm   2232 sec   (1012 perm/sec)   p_kst 5.800885e-04   p_cons 5.363199e-01   p_joint 9.991150e-04

Joint ci ratio: 8.219859e-02	ci left: 9.597324e-04	ci right 1.042430e-03	k: 2271	n:2270000
Cons ci ratio: 2.419273e-03	ci left: 5.356541e-01	ci right 5.369520e-01	k: 1217408	n:2270000
KS ci ratio: 1.078222e-01	ci left: 5.505559e-04	ci right 6.137251e-04	k: 1320	n:2270000
PPP3CA   2270000 perm   2250 sec   (1009 perm/sec)   p_kst 5.814978e-04   p_cons 5.363031e-01   p_joint 1.000441e-03

Joint ci ratio: 8.203628e-02	ci left: 9.593893e-04	ci right 1.041887e-03	k: 2280	n:2280000
Cons ci ratio: 2.413779e-03	ci left: 5.356932e-01	ci right 5.369883e-01	k: 1222857	n:2280000
KS ci ratio: 1.077408e-01	ci left: 5.489947e-04	ci right 6.119342e-04	k: 1322	n:2280000
PPP3CA   2280000 perm   2269 sec   (1005 perm/sec)   p_kst 5.798246e-04   p_cons 5.363408e-01   p_joint 1.000000e-03

Joint ci ratio: 8.194661e-02	ci left: 9.573385e-04	ci right 1.039565e-03	k: 2285	n:2290000
Cons ci ratio: 2.408753e-03	ci left: 5.356429e-01	ci right 5.369351e-01	k: 1228102	n:2290000
KS ci ratio: 1.076595e-01	ci left: 5.474472e-04	ci right 6.101589e-04	k: 1324	n:2290000
PPP3CA   2290000 perm   2287 sec   (1001 perm/sec)   p_kst 5.781659e-04   p_cons 5.362891e-01   p_joint 9.978166e-04

Joint ci ratio: 8.187511e-02	ci left: 9.548796e-04	ci right 1.036820e-03	k: 2289	n:2300000
Cons ci ratio: 2.403595e-03	ci left: 5.356270e-01	ci right 5.369164e-01	k: 1233425	n:2300000
KS ci ratio: 1.075379e-01	ci left: 5.463362e-04	ci right 6.088454e-04	k: 1327	n:2300000
PPP3CA   2300000 perm   2305 sec   (998 perm/sec)   p_kst 5.769565e-04   p_cons 5.362717e-01   p_joint 9.952174e-04

Joint ci ratio: 8.173251e-02	ci left: 9.541382e-04	ci right 1.035866e-03	k: 2297	n:2310000
Cons ci ratio: 2.398511e-03	ci left: 5.356025e-01	ci right 5.368891e-01	k: 1238728	n:2310000
KS ci ratio: 1.074571e-01	ci left: 5.448136e-04	ci right 6.070989e-04	k: 1329	n:2310000
PPP3CA   2310000 perm   2323 sec   (994 perm/sec)   p_kst 5.753247e-04   p_cons 5.362459e-01   p_joint 9.943723e-04

Joint ci ratio: 8.155525e-02	ci left: 9.542479e-04	ci right 1.035799e-03	k: 2307	n:2320000
Cons ci ratio: 2.393484e-03	ci left: 5.355731e-01	ci right 5.368570e-01	k: 1244019	n:2320000
KS ci ratio: 1.072155e-01	ci left: 5.449820e-04	ci right 6.071377e-04	k: 1335	n:2320000
PPP3CA   2320000 perm   2341 sec   (991 perm/sec)   p_kst 5.754310e-04   p_cons 5.362151e-01   p_joint 9.943966e-04

Joint ci ratio: 8.221776e-02	ci left: 9.345974e-04	ci right 1.015149e-03	k: 2270	n:2330000
Cons ci ratio: 2.388378e-03	ci left: 5.355671e-01	ci right 5.368482e-01	k: 1249364	n:2330000
KS ci ratio: 1.069756e-01	ci left: 5.451492e-04	ci right 6.071760e-04	k: 1341	n:2330000
PPP3CA   2330000 perm   2359 sec   (988 perm/sec)   p_kst 5.755365e-04   p_cons 5.362077e-01   p_joint 9.742489e-04

Joint ci ratio: 8.209139e-02	ci left: 9.335334e-04	ci right 1.013864e-03	k: 2277	n:2340000
Cons ci ratio: 2.383261e-03	ci left: 5.355702e-01	ci right 5.368485e-01	k: 1254730	n:2340000
KS ci ratio: 1.067769e-01	ci left: 5.448991e-04	ci right 6.067750e-04	k: 1346	n:2340000
PPP3CA   2340000 perm   2377 sec   (984 perm/sec)   p_kst 5.752137e-04   p_cons 5.362094e-01   p_joint 9.730769e-04

Joint ci ratio: 8.403404e-02	ci left: 8.862238e-04	ci right 9.643762e-04	k: 2173	n:2350000
Cons ci ratio: 2.378059e-03	ci left: 5.355979e-01	ci right 5.368735e-01	k: 1260154	n:2350000
KS ci ratio: 1.064611e-01	ci left: 5.458939e-04	ci right 6.076880e-04	k: 1354	n:2350000
PPP3CA   2350000 perm   2396 sec   (981 perm/sec)   p_kst 5.761702e-04   p_cons 5.362357e-01   p_joint 9.246809e-04

Joint ci ratio: 8.386064e-02	ci left: 8.862021e-04	ci right 9.641834e-04	k: 2182	n:2360000
Cons ci ratio: 2.372830e-03	ci left: 5.356381e-01	ci right 5.369110e-01	k: 1265608	n:2360000
KS ci ratio: 1.062262e-01	ci left: 5.460555e-04	ci right 6.077230e-04	k: 1360	n:2360000
PPP3CA   2360000 perm   2414 sec   (977 perm/sec)   p_kst 5.762712e-04   p_cons 5.362746e-01   p_joint 9.245763e-04

Joint ci ratio: 8.361198e-02	ci left: 8.878332e-04	ci right 9.657152e-04	k: 2195	n:2370000
Cons ci ratio: 2.367907e-03	ci left: 5.356210e-01	ci right 5.368912e-01	k: 1270927	n:2370000
KS ci ratio: 1.058766e-01	ci left: 5.474483e-04	ci right 6.090569e-04	k: 1369	n:2370000
PPP3CA   2370000 perm   2433 sec   (974 perm/sec)   p_kst 5.776371e-04   p_cons 5.362561e-01   p_joint 9.261603e-04

Joint ci ratio: 8.355504e-02	ci left: 8.853370e-04	ci right 9.629445e-04	k: 2198	n:2380000
Cons ci ratio: 2.362832e-03	ci left: 5.356422e-01	ci right 5.369098e-01	k: 1276337	n:2380000
KS ci ratio: 1.057610e-01	ci left: 5.463752e-04	ci right 6.077917e-04	k: 1372	n:2380000
PPP3CA   2380000 perm   2451 sec   (971 perm/sec)   p_kst 5.764706e-04   p_cons 5.362761e-01   p_joint 9.235294e-04

Joint ci ratio: 8.334680e-02	ci left: 8.861391e-04	ci right 9.636139e-04	k: 2209	n:2390000
Cons ci ratio: 2.357834e-03	ci left: 5.356541e-01	ci right 5.369190e-01	k: 1281725	n:2390000
KS ci ratio: 1.055689e-01	ci left: 5.461259e-04	ci right 6.073960e-04	k: 1377	n:2390000
PPP3CA   2390000 perm   2470 sec   (968 perm/sec)   p_kst 5.761506e-04   p_cons 5.362866e-01   p_joint 9.242678e-04

Joint ci ratio: 8.317761e-02	ci left: 8.861188e-04	ci right 9.634269e-04	k: 2218	n:2400000
Cons ci ratio: 2.352983e-03	ci left: 5.356413e-01	ci right 5.369036e-01	k: 1287054	n:2400000
KS ci ratio: 1.054161e-01	ci left: 5.454730e-04	ci right 6.065758e-04	k: 1381	n:2400000
PPP3CA   2400000 perm   2488 sec   (964 perm/sec)   p_kst 5.754167e-04   p_cons 5.362725e-01   p_joint 9.241667e-04

Joint ci ratio: 8.312155e-02	ci left: 8.836608e-04	ci right 9.607000e-04	k: 2221	n:2410000
Cons ci ratio: 2.348082e-03	ci left: 5.356457e-01	ci right 5.369053e-01	k: 1292424	n:2410000
KS ci ratio: 1.053400e-01	ci left: 5.440176e-04	ci right 6.049107e-04	k: 1383	n:2410000
PPP3CA   2410000 perm   2507 sec   (961 perm/sec)   p_kst 5.738589e-04   p_cons 5.362755e-01   p_joint 9.215768e-04

Joint ci ratio: 8.293513e-02	ci left: 8.840558e-04	ci right 9.609482e-04	k: 2231	n:2420000
Cons ci ratio: 2.343161e-03	ci left: 5.356607e-01	ci right 5.369177e-01	k: 1297820	n:2420000
KS ci ratio: 1.050746e-01	ci left: 5.445861e-04	ci right 6.053797e-04	k: 1390	n:2420000
PPP3CA   2420000 perm   2526 sec   (958 perm/sec)   p_kst 5.743802e-04   p_cons 5.362893e-01   p_joint 9.219008e-04

Joint ci ratio: 8.280542e-02	ci left: 8.832386e-04	ci right 9.599341e-04	k: 2238	n:2430000
Cons ci ratio: 2.338344e-03	ci left: 5.356600e-01	ci right 5.369144e-01	k: 1303178	n:2430000
KS ci ratio: 1.049615e-01	ci left: 5.435471e-04	ci right 6.041554e-04	k: 1393	n:2430000
PPP3CA   2430000 perm   2545 sec   (955 perm/sec)   p_kst 5.732510e-04   p_cons 5.362872e-01   p_joint 9.209877e-04

Joint ci ratio: 8.265790e-02	ci left: 8.828296e-04	ci right 9.593464e-04	k: 2246	n:2440000
Cons ci ratio: 2.333521e-03	ci left: 5.356671e-01	ci right 5.369189e-01	k: 1308555	n:2440000
KS ci ratio: 1.046989e-01	ci left: 5.441131e-04	ci right 6.046234e-04	k: 1400	n:2440000
PPP3CA   2440000 perm   2565 sec   (951 perm/sec)   p_kst 5.737705e-04   p_cons 5.362930e-01   p_joint 9.204918e-04

Joint ci ratio: 8.249286e-02	ci left: 8.828239e-04	ci right 9.591800e-04	k: 2255	n:2450000
Cons ci ratio: 2.328549e-03	ci left: 5.357121e-01	ci right 5.369613e-01	k: 1314025	n:2450000
KS ci ratio: 1.044383e-01	ci left: 5.446747e-04	ci right 6.050874e-04	k: 1407	n:2450000
PPP3CA   2450000 perm   2584 sec   (948 perm/sec)   p_kst 5.742857e-04   p_cons 5.363367e-01   p_joint 9.204082e-04

Joint ci ratio: 8.227429e-02	ci left: 8.840127e-04	ci right 9.602594e-04	k: 2267	n:2460000
Cons ci ratio: 2.323886e-03	ci left: 5.356973e-01	ci right 5.369441e-01	k: 1319349	n:2460000
KS ci ratio: 1.041428e-01	ci left: 5.456278e-04	ci right 6.059645e-04	k: 1415	n:2460000
PPP3CA   2460000 perm   2603 sec   (945 perm/sec)   p_kst 5.752033e-04   p_cons 5.363207e-01   p_joint 9.215447e-04

Joint ci ratio: 8.216573e-02	ci left: 8.828129e-04	ci right 9.588508e-04	k: 2273	n:2470000
Cons ci ratio: 2.319081e-03	ci left: 5.357192e-01	ci right 5.369634e-01	k: 1324763	n:2470000
KS ci ratio: 1.040694e-01	ci left: 5.442074e-04	ci right 6.043420e-04	k: 1417	n:2470000
PPP3CA   2470000 perm   2622 sec   (942 perm/sec)   p_kst 5.736842e-04   p_cons 5.363413e-01   p_joint 9.202429e-04

Joint ci ratio: 8.200362e-02	ci left: 8.828077e-04	ci right 9.586880e-04	k: 2282	n:2480000
Cons ci ratio: 2.314465e-03	ci left: 5.357065e-01	ci right 5.369482e-01	k: 1330092	n:2480000
KS ci ratio: 1.038864e-01	ci left: 5.439767e-04	ci right 6.039737e-04	k: 1422	n:2480000
PPP3CA   2480000 perm   2641 sec   (939 perm/sec)   p_kst 5.733871e-04   p_cons 5.363274e-01   p_joint 9.201613e-04

Joint ci ratio: 8.184246e-02	ci left: 8.828027e-04	ci right 9.585263e-04	k: 2291	n:2490000
Cons ci ratio: 2.309588e-03	ci left: 5.357563e-01	ci right 5.369955e-01	k: 1335576	n:2490000
KS ci ratio: 1.036318e-01	ci left: 5.445303e-04	ci right 6.044322e-04	k: 1429	n:2490000
PPP3CA   2490000 perm   2660 sec   (936 perm/sec)   p_kst 5.738956e-04   p_cons 5.363759e-01   p_joint 9.200803e-04

Joint ci ratio: 8.175341e-02	ci left: 8.812306e-04	ci right 9.567332e-04	k: 2296	n:2500000
Cons ci ratio: 2.304836e-03	ci left: 5.357852e-01	ci right 5.370219e-01	k: 1341009	n:2500000
KS ci ratio: 1.035957e-01	ci left: 5.427418e-04	ci right 6.024249e-04	k: 1430	n:2500000
PPP3CA   2500000 perm   2680 sec   (933 perm/sec)   p_kst 5.720000e-04   p_cons 5.364036e-01   p_joint 9.184000e-04

Joint ci ratio: 8.164690e-02	ci left: 8.800613e-04	ci right 9.553608e-04	k: 2302	n:2510000
Cons ci ratio: 2.300349e-03	ci left: 5.357629e-01	ci right 5.369972e-01	k: 1346314	n:2510000
KS ci ratio: 1.034152e-01	ci left: 5.425200e-04	ci right 6.020684e-04	k: 1435	n:2510000
PPP3CA   2510000 perm   2700 sec   (930 perm/sec)   p_kst 5.717131e-04   p_cons 5.363801e-01   p_joint 9.171315e-04

Joint ci ratio: 8.150547e-02	ci left: 8.796788e-04	ci right 9.548090e-04	k: 2310	n:2520000
Cons ci ratio: 2.295780e-03	ci left: 5.357642e-01	ci right 5.369960e-01	k: 1351678	n:2520000
KS ci ratio: 1.032357e-01	ci left: 5.422999e-04	ci right 6.017146e-04	k: 1440	n:2520000
PPP3CA   2520000 perm   2719 sec   (927 perm/sec)   p_kst 5.714286e-04   p_cons 5.363802e-01   p_joint 9.166667e-04

Joint ci ratio: 8.276994e-02	ci left: 8.491015e-04	ci right 9.227996e-04	k: 2240	n:2530000
Cons ci ratio: 2.291267e-03	ci left: 5.357592e-01	ci right 5.369885e-01	k: 1357026	n:2530000
KS ci ratio: 1.029502e-01	ci left: 5.432370e-04	ci right 6.025798e-04	k: 1448	n:2530000
PPP3CA   2530000 perm   2739 sec   (924 perm/sec)   p_kst 5.723320e-04   p_cons 5.363739e-01   p_joint 8.853755e-04

Joint ci ratio: 8.258586e-02	ci left: 8.496142e-04	ci right 9.231849e-04	k: 2250	n:2540000
Cons ci ratio: 2.286842e-03	ci left: 5.357408e-01	ci right 5.369678e-01	k: 1362340	n:2540000
KS ci ratio: 1.027378e-01	ci left: 5.433997e-04	ci right 6.026304e-04	k: 1454	n:2540000
PPP3CA   2540000 perm   2759 sec   (921 perm/sec)   p_kst 5.724409e-04   p_cons 5.363543e-01   p_joint 8.858268e-04

Joint ci ratio: 7.789511e-02	ci left: 9.535026e-04	ci right 1.031167e-03	k: 2529	n:2550000
Cons ci ratio: 2.282477e-03	ci left: 5.357151e-01	ci right 5.369397e-01	k: 1367635	n:2550000
KS ci ratio: 1.024214e-01	ci left: 5.447076e-04	ci right 6.038871e-04	k: 1463	n:2550000
PPP3CA   2550000 perm   2778 sec   (918 perm/sec)   p_kst 5.737255e-04   p_cons 5.363275e-01   p_joint 9.917647e-04

Joint ci ratio: 7.771100e-02	ci left: 9.543743e-04	ci right 1.031918e-03	k: 2541	n:2560000
Cons ci ratio: 2.278012e-03	ci left: 5.357170e-01	ci right 5.369391e-01	k: 1373000	n:2560000
KS ci ratio: 1.022122e-01	ci left: 5.448636e-04	ci right 6.039318e-04	k: 1469	n:2560000
PPP3CA   2560000 perm   2798 sec   (915 perm/sec)   p_kst 5.738281e-04   p_cons 5.363281e-01   p_joint 9.925781e-04

Joint ci ratio: 7.559724e-02	ci left: 1.005619e-03	ci right 1.085006e-03	k: 2685	n:2570000
Cons ci ratio: 2.273446e-03	ci left: 5.357465e-01	ci right 5.369663e-01	k: 1378436	n:2570000
KS ci ratio: 1.019696e-01	ci left: 5.453978e-04	ci right 6.043752e-04	k: 1476	n:2570000
PPP3CA   2570000 perm   2817 sec   (912 perm/sec)   p_kst 5.743191e-04   p_cons 5.363564e-01   p_joint 1.044747e-03

Joint ci ratio: 7.673543e-02	ci left: 9.716837e-04	ci right 1.049598e-03	k: 2606	n:2580000
Cons ci ratio: 2.268964e-03	ci left: 5.357634e-01	ci right 5.369807e-01	k: 1383840	n:2580000
KS ci ratio: 1.018319e-01	ci left: 5.447947e-04	ci right 6.036225e-04	k: 1480	n:2580000
PPP3CA   2580000 perm   2837 sec   (909 perm/sec)   p_kst 5.736434e-04   p_cons 5.363721e-01   p_joint 1.010078e-03

Joint ci ratio: 7.739211e-02	ci left: 9.512706e-04	ci right 1.028231e-03	k: 2562	n:2590000
Cons ci ratio: 2.264595e-03	ci left: 5.357612e-01	ci right 5.369762e-01	k: 1389195	n:2590000
KS ci ratio: 1.016947e-01	ci left: 5.441963e-04	ci right 6.028756e-04	k: 1484	n:2590000
PPP3CA   2590000 perm   2857 sec   (906 perm/sec)   p_kst 5.729730e-04   p_cons 5.363687e-01   p_joint 9.891892e-04

Joint ci ratio: 7.728668e-02	ci left: 9.502521e-04	ci right 1.027020e-03	k: 2569	n:2600000
Cons ci ratio: 2.260367e-03	ci left: 5.357336e-01	ci right 5.369463e-01	k: 1394484	n:2600000
KS ci ratio: 1.015239e-01	ci left: 5.439775e-04	ci right 6.025288e-04	k: 1489	n:2600000
PPP3CA   2600000 perm   2877 sec   (904 perm/sec)   p_kst 5.726923e-04   p_cons 5.363400e-01   p_joint 9.880769e-04

Joint ci ratio: 7.718169e-02	ci left: 9.492415e-04	ci right 1.025819e-03	k: 2576	n:2610000
Cons ci ratio: 2.256012e-03	ci left: 5.357392e-01	ci right 5.369496e-01	k: 1399859	n:2610000
KS ci ratio: 1.013880e-01	ci left: 5.433869e-04	ci right 6.017917e-04	k: 1493	n:2610000
PPP3CA   2610000 perm   2897 sec   (901 perm/sec)   p_kst 5.720307e-04   p_cons 5.363444e-01   p_joint 9.869732e-04

Joint ci ratio: 7.695796e-02	ci left: 9.512333e-04	ci right 1.027739e-03	k: 2591	n:2620000
Cons ci ratio: 2.251657e-03	ci left: 5.357505e-01	ci right 5.369586e-01	k: 1405249	n:2620000
KS ci ratio: 1.011512e-01	ci left: 5.439170e-04	ci right 6.022342e-04	k: 1500	n:2620000
PPP3CA   2620000 perm   2918 sec   (898 perm/sec)   p_kst 5.725191e-04   p_cons 5.363546e-01   p_joint 9.889313e-04

Joint ci ratio: 7.683950e-02	ci left: 9.505998e-04	ci right 1.026932e-03	k: 2599	n:2630000
Cons ci ratio: 2.247402e-03	ci left: 5.357450e-01	ci right 5.369507e-01	k: 1410595	n:2630000
KS ci ratio: 1.010840e-01	ci left: 5.425901e-04	ci right 6.007240e-04	k: 1502	n:2630000
PPP3CA   2630000 perm   2938 sec   (895 perm/sec)   p_kst 5.711027e-04   p_cons 5.363479e-01   p_joint 9.882129e-04

Joint ci ratio: 7.673631e-02	ci left: 9.495996e-04	ci right 1.025744e-03	k: 2606	n:2640000
Cons ci ratio: 2.243132e-03	ci left: 5.357482e-01	ci right 5.369517e-01	k: 1415964	n:2640000
KS ci ratio: 1.009498e-01	ci left: 5.420117e-04	ci right 6.000020e-04	k: 1506	n:2640000
PPP3CA   2640000 perm   2958 sec   (892 perm/sec)   p_kst 5.704545e-04   p_cons 5.363500e-01   p_joint 9.871212e-04

Joint ci ratio: 7.648723e-02	ci left: 9.523084e-04	ci right 1.028411e-03	k: 2623	n:2650000
Cons ci ratio: 2.238898e-03	ci left: 5.357488e-01	ci right 5.369500e-01	k: 1421326	n:2650000
KS ci ratio: 1.006828e-01	ci left: 5.429091e-04	ci right 6.008328e-04	k: 1514	n:2650000
PPP3CA   2650000 perm   2978 sec   (890 perm/sec)   p_kst 5.713208e-04   p_cons 5.363494e-01   p_joint 9.898113e-04

Joint ci ratio: 7.631291e-02	ci left: 9.531534e-04	ci right 1.029143e-03	k: 2635	n:2660000
Cons ci ratio: 2.234631e-03	ci left: 5.357622e-01	ci right 5.369611e-01	k: 1426722	n:2660000
KS ci ratio: 1.003521e-01	ci left: 5.445330e-04	ci right 6.024279e-04	k: 1524	n:2660000
PPP3CA   2660000 perm   2999 sec   (887 perm/sec)   p_kst 5.729323e-04   p_cons 5.363617e-01   p_joint 9.906015e-04

Joint ci ratio: 7.622626e-02	ci left: 9.517879e-04	ci right 1.027578e-03	k: 2641	n:2670000
Cons ci ratio: 2.230380e-03	ci left: 5.357773e-01	ci right 5.369740e-01	k: 1432123	n:2670000
KS ci ratio: 1.002536e-01	ci left: 5.435890e-04	ci right 6.013234e-04	k: 1527	n:2670000
PPP3CA   2670000 perm   3020 sec   (884 perm/sec)   p_kst 5.719101e-04   p_cons 5.363757e-01   p_joint 9.891386e-04

Joint ci ratio: 7.603937e-02	ci left: 9.529949e-04	ci right 1.028687e-03	k: 2654	n:2680000
Cons ci ratio: 2.226326e-03	ci left: 5.357535e-01	ci right 5.369479e-01	k: 1437420	n:2680000
KS ci ratio: 9.992707e-02	ci left: 5.451986e-04	ci right 6.029043e-04	k: 1537	n:2680000
PPP3CA   2680000 perm   3040 sec   (882 perm/sec)   p_kst 5.735075e-04   p_cons 5.363507e-01   p_joint 9.902985e-04

Outputting figure to mutsig2_images.part000000000136/PPP3CA.5_1622_2680000_0.00057351_0.53635_0.0009903.png
                gene_name: PPP3CA
               theta_stop: 0.100 
                    nperm: 2680000 
                     p_ks: 0.00057 
        ci_ks_bounds_left: 0.00055 
       ci_ks_bounds_right: 0.00060 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.00099 
     ci_joint_bounds_left: 0.00095 
    ci_joint_bounds_right: 0.0010 

Current progress: 26 percent done.
PRAMEF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
Cons ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
PRAMEF11   10000 perm   2 sec   (6666 perm/sec)   p_kst 6.935000e-01   p_cons 7.690000e-01   p_joint 7.735000e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF11.5_1323_10000_0.6935_0.769_0.7735.png
                gene_name: PRAMEF11
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 28 percent done.
PRAMEF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
Cons ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PRAMEF12   10000 perm   2 sec   (6446 perm/sec)   p_kst 1   p_cons 1.216000e-01   p_joint 3.950000e-01

Joint ci ratio: 3.462984e-02	ci left: 3.836802e-01	ci right 3.972517e-01	k: 7809	n:20000
Cons ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
PRAMEF12   20000 perm   3 sec   (5798 perm/sec)   p_kst 1   p_cons 1.201000e-01   p_joint 3.904500e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF12.5_1464_20000_1_0.1201_0.39045.png
                gene_name: PRAMEF12
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 30 percent done.
PPP1R16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
KS ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
PPP1R16B   10000 perm   2 sec   (5230 perm/sec)   p_kst 1.869000e-01   p_cons 2.689000e-01   p_joint 1.895000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R16B.4_1744_10000_0.1869_0.2689_0.1895.png
                gene_name: PPP1R16B
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
PPP1R3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
KS ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
PPP1R3D   10000 perm   2 sec   (6615 perm/sec)   p_kst 2.516000e-01   p_cons 8.160000e-02   p_joint 9.590000e-02

Joint ci ratio: 5.629096e-02	ci left: 1.896276e-01	ci right 2.006612e-01	k: 3902	n:20000
Cons ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
KS ci ratio: 4.786919e-02	ci left: 2.450520e-01	ci right 2.571204e-01	k: 5021	n:20000
PPP1R3D   20000 perm   3 sec   (6031 perm/sec)   p_kst 2.510500e-01   p_cons 8.165000e-02   p_joint 1.951000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3D.4_904_20000_0.25105_0.08165_0.1951.png
                gene_name: PPP1R3D
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 35 percent done.
PPP2R2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
PPP2R2A   10000 perm   2 sec   (6303 perm/sec)   p_kst 4.213000e-01   p_cons 8.600000e-03   p_joint 1.047000e-01

Joint ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
Cons ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
KS ci ratio: 3.250680e-02	ci left: 4.140945e-01	ci right 4.278284e-01	k: 8419	n:20000
PPP2R2A   20000 perm   4 sec   (5702 perm/sec)   p_kst 4.209500e-01   p_cons 8.750000e-03   p_joint 1.041000e-01

Joint ci ratio: 6.931633e-02	ci left: 9.298433e-02	ci right 9.969407e-02	k: 2889	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 2.703204e-02	ci left: 4.064890e-01	ci right 4.176614e-01	k: 12362	n:30000
PPP2R2A   30000 perm   6 sec   (5422 perm/sec)   p_kst 4.120667e-01   p_cons 8.533333e-03   p_joint 9.630000e-02

Joint ci ratio: 6.735089e-02	ci left: 7.543939e-02	ci right 8.072205e-02	k: 3122	n:40000
Cons ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
KS ci ratio: 2.338625e-02	ci left: 4.077446e-01	ci right 4.174181e-01	k: 16503	n:40000
PPP2R2A   40000 perm   8 sec   (5275 perm/sec)   p_kst 4.125750e-01   p_cons 8.800000e-03   p_joint 7.805000e-02

Joint ci ratio: 6.033915e-02	ci left: 7.548646e-02	ci right 8.020269e-02	k: 3891	n:50000
Cons ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
KS ci ratio: 2.086988e-02	ci left: 4.093583e-01	ci right 4.180117e-01	k: 20684	n:50000
PPP2R2A   50000 perm   10 sec   (5144 perm/sec)   p_kst 4.136800e-01   p_cons 8.760000e-03   p_joint 7.782000e-02

Joint ci ratio: 5.523212e-02	ci left: 7.530685e-02	ci right 7.960080e-02	k: 4646	n:60000
Cons ci ratio: 1.687177e-01	ci left: 8.164001e-03	ci right 9.684071e-03	k: 534	n:60000
KS ci ratio: 1.901032e-02	ci left: 4.107870e-01	ci right 4.186879e-01	k: 24884	n:60000
PPP2R2A   60000 perm   12 sec   (5031 perm/sec)   p_kst 4.147333e-01   p_cons 8.900000e-03   p_joint 7.743333e-02

Joint ci ratio: 4.570299e-02	ci left: 9.292238e-02	ci right 9.728268e-02	k: 6656	n:70000
Cons ci ratio: 1.577613e-01	ci left: 8.052777e-03	ci right 9.445546e-03	k: 611	n:70000
KS ci ratio: 1.760142e-02	ci left: 4.110468e-01	ci right 4.183603e-01	k: 29029	n:70000
PPP2R2A   70000 perm   14 sec   (4915 perm/sec)   p_kst 4.147000e-01   p_cons 8.728571e-03   p_joint 9.508571e-02

Joint ci ratio: 4.437839e-02	ci left: 8.688705e-02	ci right 9.084283e-02	k: 7108	n:80000
Cons ci ratio: 1.471937e-01	ci left: 8.140345e-03	ci right 9.445652e-03	k: 702	n:80000
KS ci ratio: 1.647062e-02	ci left: 4.111081e-01	ci right 4.179481e-01	k: 33162	n:80000
PPP2R2A   80000 perm   17 sec   (4810 perm/sec)   p_kst 4.145250e-01   p_cons 8.775000e-03   p_joint 8.885000e-02

Joint ci ratio: 4.032974e-02	ci left: 9.308087e-02	ci right 9.692305e-02	k: 8549	n:90000
Cons ci ratio: 1.381492e-01	ci left: 8.253798e-03	ci right 9.489281e-03	k: 797	n:90000
KS ci ratio: 1.550392e-02	ci left: 4.120778e-01	ci right 4.185276e-01	k: 37377	n:90000
PPP2R2A   90000 perm   19 sec   (4718 perm/sec)   p_kst 4.153000e-01   p_cons 8.855556e-03   p_joint 9.498889e-02

Joint ci ratio: 3.823571e-02	ci left: 9.328857e-02	ci right 9.693495e-02	k: 9510	n:100000
Cons ci ratio: 1.301497e-01	ci left: 8.404584e-03	ci right 9.584160e-03	k: 898	n:100000
KS ci ratio: 1.471046e-02	ci left: 4.121734e-01	ci right 4.182915e-01	k: 41523	n:100000
PPP2R2A   100000 perm   22 sec   (4643 perm/sec)   p_kst 4.152300e-01   p_cons 8.980000e-03   p_joint 9.510000e-02

Joint ci ratio: 3.639313e-02	ci left: 9.367012e-02	ci right 9.715125e-02	k: 10494	n:110000
Cons ci ratio: 1.246602e-01	ci left: 8.353417e-03	ci right 9.472706e-03	k: 979	n:110000
KS ci ratio: 1.399949e-02	ci left: 4.132302e-01	ci right 4.190651e-01	k: 45776	n:110000
PPP2R2A   110000 perm   24 sec   (4574 perm/sec)   p_kst 4.161455e-01   p_cons 8.900000e-03   p_joint 9.540000e-02

Joint ci ratio: 3.625633e-02	ci left: 8.715503e-02	ci right 9.038154e-02	k: 10651	n:120000
Cons ci ratio: 1.198114e-01	ci left: 8.311652e-03	ci right 9.378954e-03	k: 1060	n:120000
KS ci ratio: 1.342156e-02	ci left: 4.127013e-01	ci right 4.182861e-01	k: 49859	n:120000
PPP2R2A   120000 perm   27 sec   (4495 perm/sec)   p_kst 4.154917e-01   p_cons 8.833333e-03   p_joint 8.875833e-02

Joint ci ratio: 3.487488e-02	ci left: 8.703010e-02	ci right 9.012674e-02	k: 11514	n:130000
Cons ci ratio: 1.144805e-01	ci left: 8.426486e-03	ci right 9.457136e-03	k: 1161	n:130000
KS ci ratio: 1.289052e-02	ci left: 4.129806e-01	ci right 4.183463e-01	k: 54036	n:130000
PPP2R2A   130000 perm   29 sec   (4428 perm/sec)   p_kst 4.156615e-01   p_cons 8.930769e-03   p_joint 8.856923e-02

Joint ci ratio: 3.355402e-02	ci left: 8.733618e-02	ci right 9.032373e-02	k: 12435	n:140000
Cons ci ratio: 1.101558e-01	ci left: 8.470231e-03	ci right 9.464552e-03	k: 1254	n:140000
KS ci ratio: 1.241773e-02	ci left: 4.132308e-01	ci right 4.184013e-01	k: 58214	n:140000
PPP2R2A   140000 perm   32 sec   (4358 perm/sec)   p_kst 4.158143e-01   p_cons 8.957143e-03   p_joint 8.882143e-02

Joint ci ratio: 3.240864e-02	ci left: 8.742467e-02	ci right 9.031124e-02	k: 13329	n:150000
Cons ci ratio: 1.062074e-01	ci left: 8.521759e-03	ci right 9.484031e-03	k: 1349	n:150000
KS ci ratio: 1.199950e-02	ci left: 4.132042e-01	ci right 4.181990e-01	k: 62355	n:150000
PPP2R2A   150000 perm   35 sec   (4288 perm/sec)   p_kst 4.157000e-01   p_cons 8.993333e-03   p_joint 8.886000e-02

Joint ci ratio: 3.080591e-02	ci left: 9.048256e-02	ci right 9.331975e-02	k: 14703	n:160000
Cons ci ratio: 1.028348e-01	ci left: 8.536949e-03	ci right 9.468474e-03	k: 1439	n:160000
KS ci ratio: 1.171739e-02	ci left: 4.091746e-01	ci right 4.140036e-01	k: 65854	n:160000
PPP2R2A   160000 perm   38 sec   (4227 perm/sec)   p_kst 4.115875e-01   p_cons 8.993750e-03   p_joint 9.189375e-02

Joint ci ratio: 2.991566e-02	ci left: 9.036134e-02	ci right 9.311142e-02	k: 15594	n:170000
Cons ci ratio: 9.992937e-02	ci left: 8.522094e-03	ci right 9.424183e-03	k: 1524	n:170000
KS ci ratio: 1.136822e-02	ci left: 4.092181e-01	ci right 4.139026e-01	k: 69965	n:170000
PPP2R2A   170000 perm   41 sec   (4166 perm/sec)   p_kst 4.115588e-01   p_cons 8.964706e-03   p_joint 9.172941e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R2A.4_1425_170000_0.41156_0.0089647_0.091729.png
                gene_name: PPP2R2A
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0090 
      ci_cons_bounds_left: 0.0085 
     ci_cons_bounds_right: 0.0094 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.093 

Current progress: 37 percent done.
PPP2R3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
PPP2R3B   10000 perm   2 sec   (5896 perm/sec)   p_kst 4.214000e-01   p_cons 7.596000e-01   p_joint 5.874000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R3B.4_1780_10000_0.4214_0.7596_0.5874.png
                gene_name: PPP2R3B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 39 percent done.
PPP2R5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
KS ci ratio: 1.402266e-02	ci left: 8.802224e-01	ci right 8.927514e-01	k: 8866	n:10000
PPP2R5A   10000 perm   2 sec   (6172 perm/sec)   p_kst 8.866000e-01   p_cons 7.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R5A.4_1513_10000_0.8866_0.7219_1.png
                gene_name: PPP2R5A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
PPP2R5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 1.475779e-01	ci left: 6.101761e-02	ci right 7.083710e-02	k: 658	n:10000
PPP2R5E   10000 perm   2 sec   (6611 perm/sec)   p_kst 6.580000e-02   p_cons 7.397000e-01   p_joint 7.960000e-02

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 1.649400e-02	ci left: 7.323502e-01	ci right 7.445804e-01	k: 14770	n:20000
KS ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
PPP2R5E   20000 perm   3 sec   (5895 perm/sec)   p_kst 6.845000e-02   p_cons 7.385000e-01   p_joint 8.780000e-02

Joint ci ratio: 6.803418e-02	ci left: 9.623351e-02	ci right 1.030443e-01	k: 2988	n:30000
Cons ci ratio: 1.361034e-02	ci left: 7.293631e-01	ci right 7.393915e-01	k: 22032	n:30000
KS ci ratio: 8.431967e-02	ci left: 6.435954e-02	ci right 7.005796e-02	k: 2015	n:30000
PPP2R5E   30000 perm   5 sec   (5637 perm/sec)   p_kst 6.716667e-02   p_cons 7.344000e-01   p_joint 9.960000e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R5E.4_1456_30000_0.067167_0.7344_0.0996.png
                gene_name: PPP2R5E
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 43 percent done.
PPME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
Cons ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
KS ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
PPME1   10000 perm   1 sec   (6741 perm/sec)   p_kst 1.557000e-01   p_cons 3.987000e-01   p_joint 1.731000e-01

Outputting figure to mutsig2_images.part000000000136/PPME1.3_1217_10000_0.1557_0.3987_0.1731.png
                gene_name: PPME1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
PPOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
Cons ci ratio: 2.231198e-02	ci left: 7.467503e-01	ci right 7.637008e-01	k: 7553	n:10000
KS ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
PPOX   10000 perm   1 sec   (7030 perm/sec)   p_kst 7.710000e-02   p_cons 7.553000e-01   p_joint 3.055000e-01

Joint ci ratio: 5.554933e-02	ci left: 1.937827e-01	ci right 2.049049e-01	k: 3986	n:20000
Cons ci ratio: 1.589866e-02	ci left: 7.464072e-01	ci right 7.584194e-01	k: 15049	n:20000
KS ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
PPOX   20000 perm   3 sec   (6341 perm/sec)   p_kst 7.685000e-02   p_cons 7.524500e-01   p_joint 1.993000e-01

Outputting figure to mutsig2_images.part000000000136/PPOX.3_1482_20000_0.07685_0.75245_0.1993.png
                gene_name: PPOX
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
PPP1R15A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
PPP1R15A   10000 perm   2 sec   (6345 perm/sec)   p_kst 7.150000e-02   p_cons 1.131000e-01   p_joint 4.000000e-02

Joint ci ratio: 1.064906e-01	ci left: 6.006147e-02	ci right 6.686612e-02	k: 1268	n:20000
Cons ci ratio: 7.710129e-02	ci left: 1.100200e-01	ci right 1.188924e-01	k: 2288	n:20000
KS ci ratio: 1.023740e-01	ci left: 6.479305e-02	ci right 7.183308e-02	k: 1365	n:20000
PPP1R15A   20000 perm   3 sec   (5822 perm/sec)   p_kst 6.825000e-02   p_cons 1.144000e-01   p_joint 6.340000e-02

Joint ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
Cons ci ratio: 6.301033e-02	ci left: 1.106546e-01	ci right 1.178869e-01	k: 3427	n:30000
KS ci ratio: 8.470316e-02	ci left: 6.380404e-02	ci right 6.948023e-02	k: 1998	n:30000
PPP1R15A   30000 perm   5 sec   (5557 perm/sec)   p_kst 6.660000e-02   p_cons 1.142333e-01   p_joint 3.430000e-02

Joint ci ratio: 8.636941e-02	ci left: 4.685586e-02	ci right 5.110992e-02	k: 1958	n:40000
Cons ci ratio: 5.502967e-02	ci left: 1.094685e-01	ci right 1.156878e-01	k: 4502	n:40000
KS ci ratio: 7.104559e-02	ci left: 6.820681e-02	ci right 7.325572e-02	k: 2828	n:40000
PPP1R15A   40000 perm   7 sec   (5377 perm/sec)   p_kst 7.070000e-02   p_cons 1.125500e-01   p_joint 4.895000e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R15A.3_2033_40000_0.0707_0.11255_0.04895.png
                gene_name: PPP1R15A
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 50 percent done.
PPP1R3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
Cons ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
PPP1R3F   10000 perm   2 sec   (6124 perm/sec)   p_kst 3.189000e-01   p_cons 8.958000e-01   p_joint 5.264000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3F.3_2416_10000_0.3189_0.8958_0.5264.png
                gene_name: PPP1R3F
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 52 percent done.
PPP1R7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
Cons ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
KS ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
PPP1R7   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.480000e-02   p_cons 5.685000e-01   p_joint 1.435000e-01

Joint ci ratio: 9.036206e-02	ci left: 8.210084e-02	ci right 8.992001e-02	k: 1719	n:20000
Cons ci ratio: 2.466321e-02	ci left: 5.511844e-01	ci right 5.649987e-01	k: 11162	n:20000
KS ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
PPP1R7   20000 perm   3 sec   (5913 perm/sec)   p_kst 5.510000e-02   p_cons 5.581000e-01   p_joint 8.595000e-02

Joint ci ratio: 6.987964e-02	ci left: 9.160626e-02	ci right 9.827242e-02	k: 2847	n:30000
Cons ci ratio: 2.007261e-02	ci left: 5.540603e-01	ci right 5.653281e-01	k: 16791	n:30000
KS ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
PPP1R7   30000 perm   5 sec   (5658 perm/sec)   p_kst 5.426667e-02   p_cons 5.597000e-01   p_joint 9.490000e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R7.3_1123_30000_0.054267_0.5597_0.0949.png
                gene_name: PPP1R7
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 54 percent done.
PPP2CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
Cons ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
KS ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
PPP2CB   10000 perm   1 sec   (6968 perm/sec)   p_kst 8.546000e-01   p_cons 9.217000e-01   p_joint 9.786000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2CB.3_958_10000_0.8546_0.9217_0.9786.png
                gene_name: PPP2CB
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 57 percent done.
PPP2R1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
PPP2R1A   10000 perm   2 sec   (5960 perm/sec)   p_kst 9.600000e-02   p_cons 4.550000e-02   p_joint 1.088000e-01

Joint ci ratio: 8.803028e-02	ci left: 8.621560e-02	ci right 9.420400e-02	k: 1803	n:20000
Cons ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
KS ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
PPP2R1A   20000 perm   4 sec   (5400 perm/sec)   p_kst 9.865000e-02   p_cons 4.410000e-02   p_joint 9.015000e-02

Joint ci ratio: 8.123043e-02	ci left: 6.909987e-02	ci right 7.498333e-02	k: 2160	n:30000
Cons ci ratio: 1.043807e-01	ci left: 4.255166e-02	ci right 4.727031e-02	k: 1346	n:30000
KS ci ratio: 6.886893e-02	ci left: 9.410008e-02	ci right 1.008448e-01	k: 2923	n:30000
PPP2R1A   30000 perm   6 sec   (5265 perm/sec)   p_kst 9.743333e-02   p_cons 4.486667e-02   p_joint 7.200000e-02

Joint ci ratio: 5.825880e-02	ci left: 9.870511e-02	ci right 1.046529e-01	k: 4066	n:40000
Cons ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
KS ci ratio: 5.934493e-02	ci left: 9.542380e-02	ci right 1.012847e-01	k: 3933	n:40000
PPP2R1A   40000 perm   8 sec   (5167 perm/sec)   p_kst 9.832500e-02   p_cons 4.500000e-02   p_joint 1.016500e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R1A.3_1830_40000_0.098325_0.045_0.10165.png
                gene_name: PPP2R1A
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.10 

Current progress: 59 percent done.
PPP2R1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
Cons ci ratio: 2.534987e-02	ci left: 6.960538e-01	ci right 7.140266e-01	k: 7051	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
PPP2R1B   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.714000e-01   p_cons 7.051000e-01   p_joint 3.872000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R1B.3_2089_10000_0.2714_0.7051_0.3872.png
                gene_name: PPP2R1B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 61 percent done.
PPP2R2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
Cons ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
KS ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
PPP2R2C   10000 perm   1 sec   (6879 perm/sec)   p_kst 1.007000e-01   p_cons 4.000000e-01   p_joint 1.322000e-01

Joint ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
Cons ci ratio: 3.355911e-02	ci left: 3.986845e-01	ci right 4.123430e-01	k: 8110	n:20000
KS ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
PPP2R2C   20000 perm   3 sec   (5922 perm/sec)   p_kst 9.940000e-02   p_cons 4.055000e-01   p_joint 1.283500e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R2C.3_1454_20000_0.0994_0.4055_0.12835.png
                gene_name: PPP2R2C
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 63 percent done.
PPP3R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
Cons ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
KS ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
PPP3R1   10000 perm   1 sec   (7169 perm/sec)   p_kst 3.135000e-01   p_cons 2.236000e-01   p_joint 3.336000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3R1.3_537_10000_0.3135_0.2236_0.3336.png
                gene_name: PPP3R1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 65 percent done.
PRAMEF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
Cons ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
KS ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
PRAMEF18   10000 perm   2 sec   (6075 perm/sec)   p_kst 3.871000e-01   p_cons 6.093000e-01   p_joint 5.193000e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF18.3_2904_10000_0.3871_0.6093_0.5193.png
                gene_name: PRAMEF18
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 67 percent done.
PPP1CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
Cons ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
KS ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
PPP1CA   10000 perm   1 sec   (7294 perm/sec)   p_kst 6.175000e-01   p_cons 1.635000e-01   p_joint 7.235000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1CA.2_1054_10000_0.6175_0.1635_0.7235.png
                gene_name: PPP1CA
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 70 percent done.
PPP1R10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
Cons ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
PPP1R10   10000 perm   2 sec   (6246 perm/sec)   p_kst 5.211000e-01   p_cons 3.430000e-02   p_joint 7.190000e-02

Joint ci ratio: 5.618368e-02	ci left: 1.902211e-01	ci right 2.012675e-01	k: 3914	n:20000
Cons ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
KS ci ratio: 2.645378e-02	ci left: 5.163500e-01	ci right 5.302432e-01	k: 10466	n:20000
PPP1R10   20000 perm   4 sec   (5520 perm/sec)   p_kst 5.233000e-01   p_cons 3.680000e-02   p_joint 1.957000e-01

Joint ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
Cons ci ratio: 1.156765e-01	ci left: 3.473025e-02	ci right 3.902670e-02	k: 1105	n:30000
KS ci ratio: 2.147902e-02	ci left: 5.204308e-01	ci right 5.317641e-01	k: 15783	n:30000
PPP1R10   30000 perm   6 sec   (5303 perm/sec)   p_kst 5.261000e-01   p_cons 3.683333e-02   p_joint 3.850000e-02

Joint ci ratio: 4.041943e-02	ci left: 1.865129e-01	ci right 1.942321e-01	k: 7614	n:40000
Cons ci ratio: 1.012412e-01	ci left: 3.429319e-02	ci right 3.797454e-02	k: 1444	n:40000
KS ci ratio: 1.850112e-02	ci left: 5.238938e-01	ci right 5.337020e-01	k: 21152	n:40000
PPP1R10   40000 perm   8 sec   (5131 perm/sec)   p_kst 5.288000e-01   p_cons 3.610000e-02   p_joint 1.903500e-01

Joint ci ratio: 7.242949e-02	ci left: 5.333210e-02	ci right 5.735972e-02	k: 2766	n:50000
Cons ci ratio: 9.528604e-02	ci left: 3.117782e-02	ci right 3.431674e-02	k: 1636	n:50000
KS ci ratio: 1.653806e-02	ci left: 5.247132e-01	ci right 5.334834e-01	k: 26455	n:50000
PPP1R10   50000 perm   10 sec   (5018 perm/sec)   p_kst 5.291000e-01   p_cons 3.272000e-02   p_joint 5.532000e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R10.2_2895_50000_0.5291_0.03272_0.05532.png
                gene_name: PPP1R10
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 72 percent done.
PPP1R12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
Cons ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
PPP1R12A   10000 perm   2 sec   (6304 perm/sec)   p_kst 4.202000e-01   p_cons 7.002000e-01   p_joint 8.936000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R12A.2_3193_10000_0.4202_0.7002_0.8936.png
                gene_name: PPP1R12A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 74 percent done.
PPP1R13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
Cons ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
KS ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
PPP1R13B   10000 perm   2 sec   (6016 perm/sec)   p_kst 1.433000e-01   p_cons 2.860000e-01   p_joint 8.326000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R13B.2_3341_10000_0.1433_0.286_0.8326.png
                gene_name: PPP1R13B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 76 percent done.
PPP1R13L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
PPP1R13L   10000 perm   2 sec   (6424 perm/sec)   p_kst 9.848000e-01   p_cons 3.614000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R13L.2_2535_10000_0.9848_0.3614_0.8406.png
                gene_name: PPP1R13L
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
PPP1R1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
PPP1R1A   10000 perm   1 sec   (7361 perm/sec)   p_kst 6.268000e-01   p_cons 4.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP1R1A.2_544_10000_0.6268_0.4726_1.png
                gene_name: PPP1R1A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PPP2R5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
Cons ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
KS ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
PPP2R5B   10000 perm   1 sec   (6832 perm/sec)   p_kst 4.221000e-01   p_cons 9.560000e-02   p_joint 3.270000e-01

Joint ci ratio: 9.277284e-02	ci left: 7.813566e-02	ci right 8.578640e-02	k: 1638	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 3.220528e-02	ci left: 4.186341e-01	ci right 4.323876e-01	k: 8510	n:20000
PPP2R5B   20000 perm   3 sec   (6201 perm/sec)   p_kst 4.255000e-01   p_cons 5.995000e-02   p_joint 8.190000e-02

Joint ci ratio: 6.666765e-02	ci left: 9.987788e-02	ci right 1.067992e-01	k: 3099	n:30000
Cons ci ratio: 8.757789e-02	ci left: 5.985196e-02	ci right 6.536645e-02	k: 1877	n:30000
KS ci ratio: 2.639694e-02	ci left: 4.180327e-01	ci right 4.292487e-01	k: 12709	n:30000
PPP2R5B   30000 perm   5 sec   (5936 perm/sec)   p_kst 4.236333e-01   p_cons 6.256667e-02   p_joint 1.033000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R5B.2_1546_30000_0.42363_0.062567_0.1033.png
                gene_name: PPP2R5B
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 83 percent done.
PPP3CC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
PPP3CC   10000 perm   1 sec   (6778 perm/sec)   p_kst 1.867000e-01   p_cons 2.550000e-02   p_joint 2.032000e-01

Joint ci ratio: 7.157880e-02	ci left: 1.257128e-01	ci right 1.350949e-01	k: 2607	n:20000
Cons ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
KS ci ratio: 5.874355e-02	ci left: 1.767235e-01	ci right 1.874691e-01	k: 3641	n:20000
PPP3CC   20000 perm   3 sec   (6025 perm/sec)   p_kst 1.820500e-01   p_cons 2.580000e-02   p_joint 1.303500e-01

Joint ci ratio: 3.366803e-02	ci left: 3.059628e-01	ci right 3.164738e-01	k: 9336	n:30000
Cons ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
KS ci ratio: 4.800711e-02	ci left: 1.774500e-01	ci right 1.862117e-01	k: 5454	n:30000
PPP3CC   30000 perm   5 sec   (5816 perm/sec)   p_kst 1.818000e-01   p_cons 2.570000e-02   p_joint 3.112000e-01

Joint ci ratio: 5.581490e-02	ci left: 1.067027e-01	ci right 1.128541e-01	k: 4390	n:40000
Cons ci ratio: 1.220256e-01	ci left: 2.361333e-02	ci right 2.670613e-02	k: 1005	n:40000
KS ci ratio: 4.166769e-02	ci left: 1.773864e-01	ci right 1.849599e-01	k: 7246	n:40000
PPP3CC   40000 perm   7 sec   (5614 perm/sec)   p_kst 1.811500e-01   p_cons 2.512500e-02   p_joint 1.097500e-01

Joint ci ratio: 5.550697e-02	ci left: 8.817685e-02	ci right 9.323079e-02	k: 4534	n:50000
Cons ci ratio: 1.088550e-01	ci left: 2.390223e-02	ci right 2.667326e-02	k: 1263	n:50000
KS ci ratio: 3.724555e-02	ci left: 1.779713e-01	ci right 1.847457e-01	k: 9067	n:50000
PPP3CC   50000 perm   9 sec   (5462 perm/sec)   p_kst 1.813400e-01   p_cons 2.526000e-02   p_joint 9.068000e-02

Joint ci ratio: 5.761155e-02	ci left: 6.956588e-02	ci right 7.370900e-02	k: 4297	n:60000
Cons ci ratio: 9.970165e-02	ci left: 2.386301e-02	ci right 2.638321e-02	k: 1506	n:60000
KS ci ratio: 3.406850e-02	ci left: 1.776781e-01	ci right 1.838528e-01	k: 10845	n:60000
PPP3CC   60000 perm   11 sec   (5322 perm/sec)   p_kst 1.807500e-01   p_cons 2.510000e-02   p_joint 7.161667e-02

Outputting figure to mutsig2_images.part000000000136/PPP3CC.2_1595_60000_0.18075_0.0251_0.071617.png
                gene_name: PPP3CC
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 85 percent done.
PPP3R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
PPP3R2   10000 perm   1 sec   (7264 perm/sec)   p_kst 7.867000e-01   p_cons 2.210000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP3R2.2_526_10000_0.7867_0.221_1.png
                gene_name: PPP3R2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PPP4R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
Cons ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
KS ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
PPP4R1   10000 perm   2 sec   (6178 perm/sec)   p_kst 9.592000e-01   p_cons 1.242000e-01   p_joint 9.123000e-01

Joint ci ratio: 8.549987e-03	ci left: 9.091618e-01	ci right 9.170177e-01	k: 18263	n:20000
Cons ci ratio: 7.250885e-02	ci left: 1.228577e-01	ci right 1.321509e-01	k: 2549	n:20000
KS ci ratio: 5.646255e-03	ci left: 9.573980e-01	ci right 9.628672e-01	k: 19204	n:20000
PPP4R1   20000 perm   4 sec   (5592 perm/sec)   p_kst 9.602000e-01   p_cons 1.274500e-01   p_joint 9.131500e-01

Outputting figure to mutsig2_images.part000000000136/PPP4R1.2_2933_20000_0.9602_0.12745_0.91315.png
                gene_name: PPP4R1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 89 percent done.
PPP4R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
PPP4R2   10000 perm   1 sec   (6986 perm/sec)   p_kst 4.457000e-01   p_cons 2.520000e-02   p_joint 2.640000e-02

Joint ci ratio: 1.699858e-01	ci left: 2.369488e-02	ci right 2.814440e-02	k: 517	n:20000
Cons ci ratio: 1.675123e-01	ci left: 2.441395e-02	ci right 2.892508e-02	k: 532	n:20000
KS ci ratio: 3.066002e-02	ci left: 4.427884e-01	ci right 4.566263e-01	k: 8994	n:20000
PPP4R2   20000 perm   3 sec   (6222 perm/sec)   p_kst 4.497000e-01   p_cons 2.660000e-02   p_joint 2.585000e-02

Joint ci ratio: 1.380660e-01	ci left: 2.435743e-02	ci right 2.800178e-02	k: 784	n:30000
Cons ci ratio: 1.368183e-01	ci left: 2.480844e-02	ci right 2.848400e-02	k: 798	n:30000
KS ci ratio: 2.483651e-02	ci left: 4.479878e-01	ci right 4.592878e-01	k: 13609	n:30000
PPP4R2   30000 perm   5 sec   (5924 perm/sec)   p_kst 4.536333e-01   p_cons 2.660000e-02   p_joint 2.613333e-02

Joint ci ratio: 1.181661e-01	ci left: 2.519071e-02	ci right 2.837849e-02	k: 1070	n:40000
Cons ci ratio: 1.170479e-01	ci left: 2.567637e-02	ci right 2.889275e-02	k: 1090	n:40000
KS ci ratio: 2.147395e-02	ci left: 4.495614e-01	ci right 4.593452e-01	k: 18178	n:40000
PPP4R2   40000 perm   7 sec   (5752 perm/sec)   p_kst 4.544500e-01   p_cons 2.725000e-02   p_joint 2.675000e-02

Joint ci ratio: 1.058029e-01	ci left: 2.530453e-02	ci right 2.815078e-02	k: 1335	n:50000
Cons ci ratio: 1.038621e-01	ci left: 2.625950e-02	ci right 2.915568e-02	k: 1384	n:50000
KS ci ratio: 1.922449e-02	ci left: 4.496288e-01	ci right 4.583766e-01	k: 22700	n:50000
PPP4R2   50000 perm   9 sec   (5613 perm/sec)   p_kst 4.540000e-01   p_cons 2.768000e-02   p_joint 2.670000e-02

Joint ci ratio: 1.331015e-01	ci left: 1.330076e-02	ci right 1.521332e-02	k: 854	n:60000
Cons ci ratio: 2.037148e-01	ci left: 5.508443e-03	ci right 6.773375e-03	k: 367	n:60000
KS ci ratio: 1.754073e-02	ci left: 4.502600e-01	ci right 4.582444e-01	k: 27255	n:60000
PPP4R2   60000 perm   11 sec   (5483 perm/sec)   p_kst 4.542500e-01   p_cons 6.116667e-03   p_joint 1.423333e-02

Joint ci ratio: 1.102389e-01	ci left: 1.676388e-02	ci right 1.873353e-02	k: 1241	n:70000
Cons ci ratio: 1.900188e-01	ci left: 5.468535e-03	ci right 6.630127e-03	k: 422	n:70000
KS ci ratio: 1.625578e-02	ci left: 4.500639e-01	ci right 4.574542e-01	k: 31763	n:70000
PPP4R2   70000 perm   13 sec   (5353 perm/sec)   p_kst 4.537571e-01   p_cons 6.028571e-03   p_joint 1.772857e-02

Joint ci ratio: 1.025480e-01	ci left: 1.701686e-02	ci right 1.886833e-02	k: 1434	n:80000
Cons ci ratio: 1.747580e-01	ci left: 5.703649e-03	ci right 6.807618e-03	k: 499	n:80000
KS ci ratio: 1.521152e-02	ci left: 4.501207e-01	ci right 4.570327e-01	k: 36286	n:80000
PPP4R2   80000 perm   15 sec   (5245 perm/sec)   p_kst 4.535750e-01   p_cons 6.237500e-03   p_joint 1.792500e-02

Joint ci ratio: 9.697032e-02	ci left: 1.696786e-02	ci right 1.870786e-02	k: 1604	n:90000
Cons ci ratio: 1.636691e-01	ci left: 5.814803e-03	ci right 6.861843e-03	k: 569	n:90000
KS ci ratio: 1.433059e-02	ci left: 4.506988e-01	ci right 4.572153e-01	k: 40856	n:90000
PPP4R2   90000 perm   18 sec   (5140 perm/sec)   p_kst 4.539556e-01   p_cons 6.322222e-03   p_joint 1.782222e-02

Joint ci ratio: 9.145609e-02	ci left: 1.721430e-02	ci right 1.887382e-02	k: 1803	n:100000
Cons ci ratio: 1.537306e-01	ci left: 5.963197e-03	ci right 6.965752e-03	k: 645	n:100000
KS ci ratio: 1.358934e-02	ci left: 4.510804e-01	ci right 4.572622e-01	k: 45417	n:100000
PPP4R2   100000 perm   20 sec   (5061 perm/sec)   p_kst 4.541700e-01   p_cons 6.450000e-03   p_joint 1.803000e-02

Joint ci ratio: 8.707496e-02	ci left: 1.730257e-02	ci right 1.888662e-02	k: 1989	n:110000
Cons ci ratio: 1.460191e-01	ci left: 6.033614e-03	ci right 6.992684e-03	k: 715	n:110000
KS ci ratio: 1.295355e-02	ci left: 4.513543e-01	ci right 4.572481e-01	k: 49973	n:110000
PPP4R2   110000 perm   22 sec   (4952 perm/sec)   p_kst 4.543000e-01   p_cons 6.500000e-03   p_joint 1.808182e-02

Joint ci ratio: 8.336618e-02	ci left: 1.733689e-02	ci right 1.885319e-02	k: 2170	n:120000
Cons ci ratio: 1.399010e-01	ci left: 6.045077e-03	ci right 6.962351e-03	k: 779	n:120000
KS ci ratio: 1.239876e-02	ci left: 4.516131e-01	ci right 4.572558e-01	k: 54532	n:120000
PPP4R2   120000 perm   25 sec   (4863 perm/sec)   p_kst 4.544333e-01   p_cons 6.491667e-03   p_joint 1.808333e-02

Joint ci ratio: 8.033806e-02	ci left: 1.726158e-02	ci right 1.871388e-02	k: 2337	n:130000
Cons ci ratio: 1.351389e-01	ci left: 5.996011e-03	ci right 6.872378e-03	k: 835	n:130000
KS ci ratio: 1.192184e-02	ci left: 4.513292e-01	ci right 4.567498e-01	k: 59025	n:130000
PPP4R2   130000 perm   27 sec   (4778 perm/sec)   p_kst 4.540385e-01   p_cons 6.423077e-03   p_joint 1.797692e-02

Joint ci ratio: 7.750739e-02	ci left: 1.724693e-02	ci right 1.864456e-02	k: 2511	n:140000
Cons ci ratio: 1.304646e-01	ci left: 5.988963e-03	ci right 6.831676e-03	k: 896	n:140000
KS ci ratio: 1.148858e-02	ci left: 4.514108e-01	ci right 4.566339e-01	k: 63563	n:140000
PPP4R2   140000 perm   30 sec   (4701 perm/sec)   p_kst 4.540214e-01   p_cons 6.400000e-03   p_joint 1.793571e-02

Joint ci ratio: 9.246488e-02	ci left: 1.129222e-02	ci right 1.239344e-02	k: 1775	n:150000
Cons ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
KS ci ratio: 1.109742e-02	ci left: 4.515713e-01	ci right 4.566171e-01	k: 68114	n:150000
PPP4R2   150000 perm   32 sec   (4626 perm/sec)   p_kst 4.540933e-01   p_cons 6.286667e-03   p_joint 1.183333e-02

Joint ci ratio: 8.980259e-02	ci left: 1.123995e-02	ci right 1.230285e-02	k: 1882	n:160000
Cons ci ratio: 1.234488e-01	ci left: 5.875742e-03	ci right 6.654812e-03	k: 1001	n:160000
KS ci ratio: 1.075249e-02	ci left: 4.513083e-01	ci right 4.561934e-01	k: 72600	n:160000
PPP4R2   160000 perm   35 sec   (4551 perm/sec)   p_kst 4.537500e-01   p_cons 6.256250e-03   p_joint 1.176250e-02

Joint ci ratio: 8.711444e-02	ci left: 1.125754e-02	ci right 1.228862e-02	k: 2000	n:170000
Cons ci ratio: 1.195160e-01	ci left: 5.912259e-03	ci right 6.669432e-03	k: 1068	n:170000
KS ci ratio: 1.042780e-02	ci left: 4.515547e-01	ci right 4.562939e-01	k: 77167	n:170000
PPP4R2   170000 perm   38 sec   (4477 perm/sec)   p_kst 4.539235e-01   p_cons 6.282353e-03   p_joint 1.176471e-02

Joint ci ratio: 8.487730e-02	ci left: 1.121377e-02	ci right 1.221316e-02	k: 2107	n:180000
Cons ci ratio: 1.161427e-01	ci left: 5.923487e-03	ci right 6.659217e-03	k: 1131	n:180000
KS ci ratio: 1.013222e-02	ci left: 4.517090e-01	ci right 4.563147e-01	k: 81722	n:180000
PPP4R2   180000 perm   41 sec   (4405 perm/sec)   p_kst 4.540111e-01   p_cons 6.283333e-03   p_joint 1.170556e-02

Joint ci ratio: 8.287983e-02	ci left: 1.115430e-02	ci right 1.212385e-02	k: 2210	n:190000
Cons ci ratio: 1.133263e-01	ci left: 5.903112e-03	ci right 6.617342e-03	k: 1188	n:190000
KS ci ratio: 9.865970e-03	ci left: 4.515700e-01	ci right 4.560525e-01	k: 86224	n:190000
PPP4R2   190000 perm   44 sec   (4342 perm/sec)   p_kst 4.538105e-01   p_cons 6.252632e-03   p_joint 1.163158e-02

Joint ci ratio: 8.260254e-02	ci left: 1.067482e-02	ci right 1.159944e-02	k: 2226	n:200000
Cons ci ratio: 1.105270e-01	ci left: 5.904418e-03	ci right 6.600010e-03	k: 1249	n:200000
KS ci ratio: 9.616658e-03	ci left: 4.516013e-01	ci right 4.559701e-01	k: 90757	n:200000
PPP4R2   200000 perm   47 sec   (4276 perm/sec)   p_kst 4.537850e-01   p_cons 6.245000e-03   p_joint 1.113000e-02

Joint ci ratio: 7.873244e-02	ci left: 1.120710e-02	ci right 1.213026e-02	k: 2449	n:210000
Cons ci ratio: 1.075546e-01	ci left: 5.947505e-03	ci right 6.628136e-03	k: 1319	n:210000
KS ci ratio: 9.382273e-03	ci left: 4.517927e-01	ci right 4.560562e-01	k: 95324	n:210000
PPP4R2   210000 perm   50 sec   (4217 perm/sec)   p_kst 4.539238e-01   p_cons 6.280952e-03   p_joint 1.166190e-02

Joint ci ratio: 7.728359e-02	ci left: 1.111215e-02	ci right 1.200988e-02	k: 2542	n:220000
Cons ci ratio: 1.050381e-01	ci left: 5.960341e-03	ci right 6.625495e-03	k: 1383	n:220000
KS ci ratio: 9.168432e-03	ci left: 4.517407e-01	ci right 4.559060e-01	k: 99841	n:220000
PPP4R2   220000 perm   53 sec   (4161 perm/sec)   p_kst 4.538227e-01   p_cons 6.286364e-03   p_joint 1.155455e-02

Joint ci ratio: 7.550718e-02	ci left: 1.114505e-02	ci right 1.202384e-02	k: 2663	n:230000
Cons ci ratio: 1.027617e-01	ci left: 5.963756e-03	ci right 6.613998e-03	k: 1445	n:230000
KS ci ratio: 8.964644e-03	ci left: 4.519115e-01	ci right 4.559853e-01	k: 104408	n:230000
PPP4R2   230000 perm   56 sec   (4101 perm/sec)   p_kst 4.539478e-01   p_cons 6.282609e-03   p_joint 1.157826e-02

Joint ci ratio: 7.380767e-02	ci left: 1.118771e-02	ci right 1.204915e-02	k: 2787	n:240000
Cons ci ratio: 1.007282e-01	ci left: 5.954842e-03	ci right 6.590503e-03	k: 1504	n:240000
KS ci ratio: 8.774088e-03	ci left: 4.520566e-01	ci right 4.560445e-01	k: 108972	n:240000
PPP4R2   240000 perm   59 sec   (4042 perm/sec)   p_kst 4.540500e-01   p_cons 6.266667e-03   p_joint 1.161250e-02

Joint ci ratio: 7.234377e-02	ci left: 1.118786e-02	ci right 1.203152e-02	k: 2901	n:250000
Cons ci ratio: 9.868382e-02	ci left: 5.962366e-03	ci right 6.585164e-03	k: 1567	n:250000
KS ci ratio: 8.592970e-03	ci left: 4.523188e-01	ci right 4.562263e-01	k: 113568	n:250000
PPP4R2   250000 perm   63 sec   (3987 perm/sec)   p_kst 4.542720e-01   p_cons 6.268000e-03   p_joint 1.160400e-02

Outputting figure to mutsig2_images.part000000000136/PPP4R2.2_1290_250000_0.45427_0.006268_0.011604.png
                gene_name: PPP4R2
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 91 percent done.
PPP4R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
PPP4R4   10000 perm   2 sec   (6010 perm/sec)   p_kst 3.659000e-01   p_cons 2.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP4R4.2_2795_10000_0.3659_0.2666_1.png
                gene_name: PPP4R4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
PPT1   10000 perm   1 sec   (7388 perm/sec)   p_kst 8.283000e-01   p_cons 7.752000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPT1.2_957_10000_0.8283_0.7752_1.png
                gene_name: PPT1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PPWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
KS ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
PPWD1   10000 perm   1 sec   (6731 perm/sec)   p_kst 7.880000e-01   p_cons 2.325000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPWD1.2_1985_10000_0.788_0.2325_1.png
                gene_name: PPWD1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PPYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.058183e-02	ci left: 6.120101e-01	ci right 6.311190e-01	k: 6216	n:10000
KS ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
PPYR1   10000 perm   1 sec   (6891 perm/sec)   p_kst 2.001000e-01   p_cons 6.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPYR1.2_1132_10000_0.2001_0.6216_1.png
                gene_name: PPYR1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000136
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 136 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 4422333: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000137> was used as the working directory.
Started at Wed Oct 24 18:04:10 2012
Results reported at Wed Oct 24 18:22:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000137.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000137.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 137  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000137.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1313.63 sec.
    Max Memory :      5319 MB
    Max Swap   :      7633 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
137
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 137
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 137: processing genes 12305 - 12394
Calculating significance of each gene.
Using projection method.
12305	PRAMEF4	2.234376e-02
12306	PRAP1	3.728402e-02
12307	PRB1	4.793580e-01
12308	PRB2	9.394464e-01
12309	PRB3	6.817106e-01
12310	PRB4	5.270617e-01
12311	PRC1	9.064409e-01
12312	PRCC	2.923484e-01
12313	PRCD	1
12314	PRCP	6.336145e-01
12315	PRDM1	6.674881e-01
12316	PRDM10	9.574399e-01
12317	PRDM11	7.089087e-02
12318	PRDM12	7.484554e-01
12319	PRDM13	9.073104e-01
12320	PRDM14	4.521481e-03
12321	PRDM15	9.997171e-01
12322	PRDM16	7.084072e-01
12323	PRDM2	9.644900e-01
12324	PRDM4	4.309881e-01
12325	PRDM5	2.736239e-01
12326	PRDM7	3.527405e-01
12327	PRDM8	8.732426e-01
12328	PRDM9	1
12329	PRDX1	2.961430e-01
12330	PRDX2	4.545032e-01
12331	PRDX3	1
12332	PRDX4	2.275465e-01
12333	PRDX5	7.755363e-01
12334	PRDX6	2.352883e-01
12335	PREB	7.999094e-01
12336	PRELID1	8.144363e-01
12337	PRELID2	5.535026e-01
12338	PRELP	1.467163e-01
12339	PREP	4.183486e-01
12340	PREPL	1
12341	PREX1	9.981001e-01
12342	PREX2	9.966160e-01
12343	PRF1	3.982547e-01
12344	PRG2	3.246192e-01
12345	PRG3	6.148659e-02
12346	PRG4	9.995628e-01
12347	PRH1	2.729451e-01
12348	PRH2	5.098002e-01
12349	PRHOXNB	1
12350	PRIC285	9.936388e-01
12351	PRICKLE1	5.935200e-01
12352	PRICKLE2	9.584214e-01
12353	PRICKLE3	2.045161e-01
12354	PRICKLE4	8.643623e-01
12355	PRIM1	9.614625e-02
12356	PRIM2	4.113553e-04
12357	PRIMA1	1
12358	PRKAA1	3.236850e-01
12359	PRKAA2	1
12360	PRKAB1	3.008136e-01
12361	PRKAB2	1
12362	PRKACA	1
12363	PRKACB	3.222864e-01
12364	PRKACG	9.458285e-01
12365	PRKAG1	1
12366	PRKAG2	4.284202e-01
12367	PRKAG3	5.972819e-01
12368	PRKAR1A	7.898930e-01
12369	PRKAR1B	8.006162e-02
12370	PRKAR2A	7.290992e-01
12371	PRKAR2B	1
12372	PRKCA	9.432239e-01
12373	PRKCB	4.949530e-01
12374	PRKCD	9.943859e-01
12375	PRKCDBP	1
12376	PRKCE	1
12377	PRKCG	6.248551e-02
12378	PRKCH	9.373755e-01
12379	PRKCI	2.377704e-01
12380	PRKCQ	9.878946e-01
12381	PRKCSH	9.276985e-01
12382	PRKCZ	7.601582e-01
12383	PRKD1	1.051338e-02
12384	PRKD2	6.895951e-01
12385	PRKD3	4.749863e-01
12386	PRKDC	9.969720e-01
12387	PRKG1	9.579333e-01
12388	PRKG2	2.897172e-01
12389	PRKRA	6.460665e-01
12390	PRKRIP1	1
12391	PRKRIR	1.510930e-01
12392	PRKX	2.788227e-01
12393	PRL	1
12394	PRLH	1
Done

Running MutSig 2:
Scatter job 137: processing genes 12305 - 12394
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRDM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
PRDM9   10000 perm   3 sec   (3315 perm/sec)   p_kst 3.964000e-01   p_cons 8.800000e-03   p_joint 4.320000e-02

Joint ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
Cons ci ratio: 2.900427e-01	ci left: 7.737913e-03	ci right 1.040775e-02	k: 180	n:20000
KS ci ratio: 3.438377e-02	ci left: 3.870693e-01	ci right 4.006616e-01	k: 7877	n:20000
PRDM9   20000 perm   10 sec   (2090 perm/sec)   p_kst 3.938500e-01   p_cons 9.000000e-03   p_joint 6.055000e-02

Joint ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
Cons ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
KS ci ratio: 2.807416e-02	ci left: 3.883315e-01	ci right 3.994224e-01	k: 11816	n:30000
PRDM9   30000 perm   13 sec   (2308 perm/sec)   p_kst 3.938667e-01   p_cons 8.600000e-03   p_joint 3.380000e-02

Joint ci ratio: 1.286758e-01	ci left: 2.121417e-02	ci right 2.415569e-02	k: 906	n:40000
Cons ci ratio: 2.139160e-01	ci left: 7.434246e-03	ci right 9.238224e-03	k: 332	n:40000
KS ci ratio: 2.337299e-02	ci left: 4.080191e-01	ci right 4.176936e-01	k: 16514	n:40000
PRDM9   40000 perm   17 sec   (2417 perm/sec)   p_kst 4.128500e-01   p_cons 8.300000e-03   p_joint 2.265000e-02

Joint ci ratio: 1.242443e-01	ci left: 1.830595e-02	ci right 2.075028e-02	k: 975	n:50000
Cons ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
KS ci ratio: 2.093109e-02	ci left: 4.079406e-01	ci right 4.165896e-01	k: 20613	n:50000
PRDM9   50000 perm   20 sec   (2480 perm/sec)   p_kst 4.122600e-01   p_cons 8.220000e-03   p_joint 1.950000e-02

Joint ci ratio: 1.104822e-01	ci left: 1.941349e-02	ci right 2.169988e-02	k: 1232	n:60000
Cons ci ratio: 1.799122e-01	ci left: 7.143483e-03	ci right 8.571405e-03	k: 470	n:60000
KS ci ratio: 1.914936e-02	ci left: 4.072589e-01	ci right 4.151497e-01	k: 24672	n:60000
PRDM9   60000 perm   24 sec   (2519 perm/sec)   p_kst 4.112000e-01   p_cons 7.833333e-03   p_joint 2.053333e-02

Joint ci ratio: 8.935623e-02	ci left: 2.556023e-02	ci right 2.796493e-02	k: 1872	n:70000
Cons ci ratio: 1.661860e-01	ci left: 7.230099e-03	ci right 8.554040e-03	k: 551	n:70000
KS ci ratio: 1.774726e-02	ci left: 4.070522e-01	ci right 4.143552e-01	k: 28749	n:70000
PRDM9   70000 perm   28 sec   (2540 perm/sec)   p_kst 4.107000e-01   p_cons 7.871429e-03   p_joint 2.674286e-02

Joint ci ratio: 7.813804e-02	ci left: 2.930695e-02	ci right 3.170226e-02	k: 2439	n:80000
Cons ci ratio: 1.556840e-01	ci left: 7.250108e-03	ci right 8.485982e-03	k: 628	n:80000
KS ci ratio: 1.659938e-02	ci left: 4.073379e-01	ci right 4.141686e-01	k: 32860	n:80000
PRDM9   80000 perm   31 sec   (2553 perm/sec)   p_kst 4.107500e-01   p_cons 7.850000e-03   p_joint 3.048750e-02

Joint ci ratio: 7.793051e-02	ci left: 2.627777e-02	ci right 2.841950e-02	k: 2460	n:90000
Cons ci ratio: 1.466369e-01	ci left: 7.299843e-03	ci right 8.465545e-03	k: 708	n:90000
KS ci ratio: 1.569201e-02	ci left: 4.062404e-01	ci right 4.126766e-01	k: 36851	n:90000
PRDM9   90000 perm   35 sec   (2556 perm/sec)   p_kst 4.094556e-01   p_cons 7.866667e-03   p_joint 2.733333e-02

Joint ci ratio: 7.599129e-02	ci left: 2.493412e-02	ci right 2.691351e-02	k: 2591	n:100000
Cons ci ratio: 1.374319e-01	ci left: 7.515116e-03	ci right 8.633699e-03	k: 806	n:100000
KS ci ratio: 1.512974e-02	ci left: 3.986095e-01	ci right 4.046962e-01	k: 40165	n:100000
PRDM9   100000 perm   39 sec   (2553 perm/sec)   p_kst 4.016500e-01   p_cons 8.060000e-03   p_joint 2.591000e-02

Joint ci ratio: 6.937128e-02	ci left: 2.722963e-02	ci right 2.919536e-02	k: 3102	n:110000
Cons ci ratio: 1.312376e-01	ci left: 7.517191e-03	ci right 8.581719e-03	k: 884	n:110000
KS ci ratio: 1.444492e-02	ci left: 3.981109e-01	ci right 4.039125e-01	k: 44111	n:110000
PRDM9   110000 perm   43 sec   (2546 perm/sec)   p_kst 4.010091e-01   p_cons 8.036364e-03   p_joint 2.820000e-02

Joint ci ratio: 7.690596e-02	ci left: 2.037604e-02	ci right 2.201388e-02	k: 2542	n:120000
Cons ci ratio: 1.297402e-01	ci left: 7.059936e-03	ci right 8.047419e-03	k: 905	n:120000
KS ci ratio: 1.415904e-02	ci left: 3.870058e-01	ci right 3.925328e-01	k: 46772	n:120000
PRDM9   120000 perm   47 sec   (2531 perm/sec)   p_kst 3.897667e-01   p_cons 7.541667e-03   p_joint 2.118333e-02

Joint ci ratio: 6.633224e-02	ci left: 2.529304e-02	ci right 2.703587e-02	k: 3400	n:130000
Cons ci ratio: 1.247465e-01	ci left: 7.067981e-03	ci right 8.015723e-03	k: 979	n:130000
KS ci ratio: 1.360637e-02	ci left: 3.870169e-01	ci right 3.923265e-01	k: 50657	n:130000
PRDM9   130000 perm   52 sec   (2515 perm/sec)   p_kst 3.896692e-01   p_cons 7.530769e-03   p_joint 2.615385e-02

Joint ci ratio: 6.507445e-02	ci left: 2.444151e-02	ci right 2.609252e-02	k: 3536	n:140000
Cons ci ratio: 1.196607e-01	ci left: 7.151731e-03	ci right 8.068840e-03	k: 1064	n:140000
KS ci ratio: 1.312025e-02	ci left: 3.867946e-01	ci right 3.919100e-01	k: 54509	n:140000
PRDM9   140000 perm   56 sec   (2500 perm/sec)   p_kst 3.893500e-01   p_cons 7.600000e-03   p_joint 2.525714e-02

Joint ci ratio: 6.615303e-02	ci left: 2.211612e-02	ci right 2.363574e-02	k: 3430	n:150000
Cons ci ratio: 1.154541e-01	ci left: 7.186138e-03	ci right 8.073054e-03	k: 1143	n:150000
KS ci ratio: 1.267582e-02	ci left: 3.868646e-01	ci right 3.918063e-01	k: 58400	n:150000
PRDM9   150000 perm   60 sec   (2486 perm/sec)   p_kst 3.893333e-01   p_cons 7.620000e-03   p_joint 2.286667e-02

Joint ci ratio: 6.675022e-02	ci left: 2.039521e-02	ci right 2.180972e-02	k: 3375	n:160000
Cons ci ratio: 1.121248e-01	ci left: 7.155974e-03	ci right 8.012014e-03	k: 1212	n:160000
KS ci ratio: 1.227434e-02	ci left: 3.869035e-01	ci right 3.916880e-01	k: 62287	n:160000
PRDM9   160000 perm   65 sec   (2468 perm/sec)   p_kst 3.892937e-01   p_cons 7.575000e-03   p_joint 2.109375e-02

Joint ci ratio: 6.442773e-02	ci left: 2.062468e-02	ci right 2.200347e-02	k: 3622	n:170000
Cons ci ratio: 1.093692e-01	ci left: 7.089624e-03	ci right 7.915540e-03	k: 1274	n:170000
KS ci ratio: 1.190447e-02	ci left: 3.871104e-01	ci right 3.917522e-01	k: 66203	n:170000
PRDM9   170000 perm   69 sec   (2451 perm/sec)   p_kst 3.894294e-01   p_cons 7.494118e-03   p_joint 2.130588e-02

Joint ci ratio: 6.272218e-02	ci left: 2.057230e-02	ci right 2.190985e-02	k: 3822	n:180000
Cons ci ratio: 1.064069e-01	ci left: 7.084962e-03	ci right 7.886579e-03	k: 1346	n:180000
KS ci ratio: 1.156506e-02	ci left: 3.873406e-01	ci right 3.918518e-01	k: 70127	n:180000
PRDM9   180000 perm   74 sec   (2424 perm/sec)   p_kst 3.895944e-01   p_cons 7.477778e-03   p_joint 2.123333e-02

Joint ci ratio: 5.762168e-02	ci left: 2.309332e-02	ci right 2.446863e-02	k: 4517	n:190000
Cons ci ratio: 1.037836e-01	ci left: 7.065678e-03	ci right 7.844200e-03	k: 1415	n:190000
KS ci ratio: 1.125922e-02	ci left: 3.872907e-01	ci right 3.916811e-01	k: 74002	n:190000
PRDM9   190000 perm   80 sec   (2370 perm/sec)   p_kst 3.894842e-01   p_cons 7.447368e-03   p_joint 2.377368e-02

Joint ci ratio: 5.692624e-02	ci left: 2.250029e-02	ci right 2.382358e-02	k: 4631	n:200000
Cons ci ratio: 1.010373e-01	ci left: 7.092410e-03	ci right 7.851971e-03	k: 1493	n:200000
KS ci ratio: 1.097366e-02	ci left: 3.873670e-01	ci right 3.916462e-01	k: 77901	n:200000
PRDM9   200000 perm   85 sec   (2350 perm/sec)   p_kst 3.895050e-01   p_cons 7.465000e-03   p_joint 2.315500e-02

Joint ci ratio: 5.438988e-02	ci left: 2.348117e-02	ci right 2.479868e-02	k: 5068	n:210000
Cons ci ratio: 9.843487e-02	ci left: 7.126132e-03	ci right 7.868512e-03	k: 1573	n:210000
KS ci ratio: 1.071060e-02	ci left: 3.873565e-01	ci right 3.915323e-01	k: 81783	n:210000
PRDM9   210000 perm   90 sec   (2332 perm/sec)   p_kst 3.894429e-01   p_cons 7.490476e-03   p_joint 2.413333e-02

Outputting figure to mutsig2_images.part000000000137/PRDM9.32_2725_210000_0.38944_0.0074905_0.024133.png
                gene_name: PRDM9
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0079 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 2 percent done.
PRKDC
Processing conservation and coverage...
78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
Cons ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
KS ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
PRKDC   10000 perm   5 sec   (2034 perm/sec)   p_kst 5.314000e-01   p_cons 6.349000e-01   p_joint 6.754000e-01

Outputting figure to mutsig2_images.part000000000137/PRKDC.23_12730_10000_0.5314_0.6349_0.6754.png
                gene_name: PRKDC
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 3 percent done.
PREX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
Cons ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
KS ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
PREX1   10000 perm   3 sec   (3406 perm/sec)   p_kst 5.100000e-03   p_cons 5.688000e-01   p_joint 5.280000e-02

Joint ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
Cons ci ratio: 2.505559e-02	ci left: 5.433737e-01	ci right 5.572116e-01	k: 11006	n:20000
KS ci ratio: 4.099816e-01	ci left: 3.620038e-03	ci right 5.528410e-03	k: 90	n:20000
PREX1   20000 perm   6 sec   (3161 perm/sec)   p_kst 4.500000e-03   p_cons 5.503000e-01   p_joint 2.870000e-02

Joint ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
Cons ci ratio: 1.902610e-02	ci left: 5.803014e-01	ci right 5.914819e-01	k: 17577	n:30000
KS ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
PREX1   30000 perm   10 sec   (3047 perm/sec)   p_kst 4.233333e-03   p_cons 5.859000e-01   p_joint 1.496667e-02

Joint ci ratio: 1.791708e-01	ci left: 1.076482e-02	ci right 1.290693e-02	k: 472	n:40000
Cons ci ratio: 1.644331e-02	ci left: 5.820560e-01	ci right 5.917314e-01	k: 23476	n:40000
KS ci ratio: 3.017950e-01	ci left: 3.566836e-03	ci right 4.856777e-03	k: 167	n:40000
PREX1   40000 perm   13 sec   (2975 perm/sec)   p_kst 4.175000e-03   p_cons 5.869000e-01   p_joint 1.180000e-02

Joint ci ratio: 1.408252e-01	ci left: 1.418442e-02	ci right 1.635239e-02	k: 762	n:50000
Cons ci ratio: 1.469954e-02	ci left: 5.828295e-01	ci right 5.914803e-01	k: 29358	n:50000
KS ci ratio: 2.705821e-01	ci left: 3.614787e-03	ci right 4.763953e-03	k: 208	n:50000
PREX1   50000 perm   17 sec   (2926 perm/sec)   p_kst 4.160000e-03   p_cons 5.871600e-01   p_joint 1.524000e-02

Joint ci ratio: 1.206722e-01	ci left: 1.623943e-02	ci right 1.834097e-02	k: 1036	n:60000
Cons ci ratio: 1.370622e-02	ci left: 5.728848e-01	ci right 5.808078e-01	k: 34611	n:60000
KS ci ratio: 2.479019e-01	ci left: 3.635747e-03	ci right 4.679779e-03	k: 248	n:60000
PREX1   60000 perm   21 sec   (2885 perm/sec)   p_kst 4.133333e-03   p_cons 5.768500e-01   p_joint 1.726667e-02

Joint ci ratio: 1.196580e-01	ci left: 1.419573e-02	ci right 1.601622e-02	k: 1056	n:70000
Cons ci ratio: 1.272019e-02	ci left: 5.719999e-01	ci right 5.793367e-01	k: 40297	n:70000
KS ci ratio: 2.309138e-01	ci left: 3.626681e-03	ci right 4.586571e-03	k: 286	n:70000
PREX1   70000 perm   25 sec   (2840 perm/sec)   p_kst 4.085714e-03   p_cons 5.756714e-01   p_joint 1.508571e-02

Joint ci ratio: 1.130274e-01	ci left: 1.397463e-02	ci right 1.566082e-02	k: 1184	n:80000
Cons ci ratio: 1.190163e-02	ci left: 5.721161e-01	ci right 5.789784e-01	k: 46044	n:80000
KS ci ratio: 2.166646e-01	ci left: 3.633543e-03	ci right 4.528011e-03	k: 325	n:80000
PREX1   80000 perm   29 sec   (2800 perm/sec)   p_kst 4.062500e-03   p_cons 5.755500e-01   p_joint 1.480000e-02

Joint ci ratio: 1.261060e-01	ci left: 9.951957e-03	ci right 1.130209e-02	k: 955	n:90000
Cons ci ratio: 1.155168e-02	ci left: 5.580505e-01	ci right 5.645455e-01	k: 50517	n:90000
KS ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
PREX1   90000 perm   33 sec   (2768 perm/sec)   p_kst 4.022222e-03   p_cons 5.613000e-01   p_joint 1.061111e-02

Joint ci ratio: 1.074271e-01	ci left: 1.243363e-02	ci right 1.385482e-02	k: 1313	n:100000
Cons ci ratio: 1.097471e-02	ci left: 5.575071e-01	ci right 5.636693e-01	k: 56059	n:100000
KS ci ratio: 1.965960e-01	ci left: 3.570682e-03	ci right 4.358518e-03	k: 395	n:100000
PREX1   100000 perm   37 sec   (2734 perm/sec)   p_kst 3.950000e-03   p_cons 5.605900e-01   p_joint 1.313000e-02

Joint ci ratio: 1.092301e-01	ci left: 1.094020e-02	ci right 1.221302e-02	k: 1272	n:110000
Cons ci ratio: 1.046165e-02	ci left: 5.577610e-01	ci right 5.636358e-01	k: 61677	n:110000
KS ci ratio: 1.882295e-01	ci left: 3.557585e-03	ci right 4.305308e-03	k: 431	n:110000
PREX1   110000 perm   41 sec   (2702 perm/sec)   p_kst 3.918182e-03   p_cons 5.607000e-01   p_joint 1.156364e-02

Joint ci ratio: 1.146869e-01	ci left: 9.088400e-03	ci right 1.020216e-02	k: 1156	n:120000
Cons ci ratio: 1.000442e-02	ci left: 5.584701e-01	ci right 5.640936e-01	k: 67354	n:120000
KS ci ratio: 1.818253e-01	ci left: 3.507481e-03	ci right 4.216828e-03	k: 462	n:120000
PREX1   120000 perm   45 sec   (2670 perm/sec)   p_kst 3.850000e-03   p_cons 5.612833e-01   p_joint 9.633333e-03

Joint ci ratio: 1.149305e-01	ci left: 8.359225e-03	ci right 9.385939e-03	k: 1152	n:130000
Cons ci ratio: 9.610868e-03	ci left: 5.586358e-01	ci right 5.640384e-01	k: 72974	n:130000
KS ci ratio: 1.751455e-01	ci left: 3.502227e-03	ci right 4.181738e-03	k: 498	n:130000
PREX1   130000 perm   49 sec   (2629 perm/sec)   p_kst 3.830769e-03   p_cons 5.613385e-01   p_joint 8.861538e-03

Joint ci ratio: 1.125324e-01	ci left: 8.109061e-03	ci right 9.082885e-03	k: 1202	n:140000
Cons ci ratio: 9.246421e-03	ci left: 5.595249e-01	ci right 5.647296e-01	k: 78698	n:140000
KS ci ratio: 1.686776e-01	ci left: 3.518659e-03	ci right 4.173583e-03	k: 537	n:140000
PREX1   140000 perm   54 sec   (2599 perm/sec)   p_kst 3.835714e-03   p_cons 5.621286e-01   p_joint 8.585714e-03

Joint ci ratio: 9.329234e-02	ci left: 1.109030e-02	ci right 1.218203e-02	k: 1744	n:150000
Cons ci ratio: 8.935109e-03	ci left: 5.594914e-01	ci right 5.645196e-01	k: 84301	n:150000
KS ci ratio: 1.641673e-01	ci left: 3.475746e-03	ci right 4.103675e-03	k: 567	n:150000
PREX1   150000 perm   58 sec   (2572 perm/sec)   p_kst 3.780000e-03   p_cons 5.620067e-01   p_joint 1.162667e-02

Joint ci ratio: 7.901390e-02	ci left: 1.455102e-02	ci right 1.575414e-02	k: 2423	n:160000
Cons ci ratio: 8.652272e-03	ci left: 5.595209e-01	ci right 5.643893e-01	k: 89913	n:160000
KS ci ratio: 1.578940e-01	ci left: 3.534437e-03	ci right 4.146258e-03	k: 613	n:160000
PREX1   160000 perm   63 sec   (2543 perm/sec)   p_kst 3.831250e-03   p_cons 5.619563e-01   p_joint 1.514375e-02

Joint ci ratio: 7.980450e-02	ci left: 1.343532e-02	ci right 1.455781e-02	k: 2378	n:170000
Cons ci ratio: 8.393295e-03	ci left: 5.596317e-01	ci right 5.643545e-01	k: 95539	n:170000
KS ci ratio: 1.533420e-01	ci left: 3.535702e-03	ci right 4.128476e-03	k: 650	n:170000
PREX1   170000 perm   68 sec   (2517 perm/sec)   p_kst 3.823529e-03   p_cons 5.619941e-01   p_joint 1.398824e-02

Joint ci ratio: 7.777461e-02	ci left: 1.337511e-02	ci right 1.446285e-02	k: 2504	n:180000
Cons ci ratio: 8.161694e-03	ci left: 5.594041e-01	ci right 5.639940e-01	k: 101106	n:180000
KS ci ratio: 1.480858e-01	ci left: 3.590547e-03	ci right 4.170056e-03	k: 697	n:180000
PREX1   180000 perm   72 sec   (2490 perm/sec)   p_kst 3.872222e-03   p_cons 5.617000e-01   p_joint 1.391111e-02

Joint ci ratio: 7.883031e-02	ci left: 1.234065e-02	ci right 1.335851e-02	k: 2440	n:190000
Cons ci ratio: 7.949279e-03	ci left: 5.591389e-01	ci right 5.636066e-01	k: 106661	n:190000
KS ci ratio: 1.427595e-01	ci left: 3.670382e-03	ci right 4.239654e-03	k: 750	n:190000
PREX1   190000 perm   77 sec   (2462 perm/sec)   p_kst 3.947368e-03   p_cons 5.613737e-01   p_joint 1.284211e-02

Joint ci ratio: 7.923472e-02	ci left: 1.161071e-02	ci right 1.257351e-02	k: 2417	n:200000
Cons ci ratio: 7.751285e-03	ci left: 5.589868e-01	ci right 5.633414e-01	k: 112233	n:200000
KS ci ratio: 1.392798e-01	ci left: 3.670159e-03	ci right 4.224371e-03	k: 788	n:200000
PREX1   200000 perm   82 sec   (2436 perm/sec)   p_kst 3.940000e-03   p_cons 5.611650e-01   p_joint 1.208500e-02

Joint ci ratio: 7.977677e-02	ci left: 1.091298e-02	ci right 1.182439e-02	k: 2386	n:210000
Cons ci ratio: 7.567821e-03	ci left: 5.588219e-01	ci right 5.630717e-01	k: 117799	n:210000
KS ci ratio: 1.362082e-01	ci left: 3.660910e-03	ci right 4.200544e-03	k: 824	n:210000
PREX1   210000 perm   87 sec   (2412 perm/sec)   p_kst 3.923810e-03   p_cons 5.609476e-01   p_joint 1.136190e-02

Joint ci ratio: 7.916303e-02	ci left: 1.058616e-02	ci right 1.146316e-02	k: 2424	n:220000
Cons ci ratio: 7.387379e-03	ci left: 5.593007e-01	ci right 5.634523e-01	k: 123503	n:220000
KS ci ratio: 1.330214e-01	ci left: 3.670201e-03	ci right 4.197547e-03	k: 864	n:220000
PREX1   220000 perm   92 sec   (2385 perm/sec)   p_kst 3.927273e-03   p_cons 5.613773e-01   p_joint 1.101818e-02

Joint ci ratio: 7.630813e-02	ci left: 1.091041e-02	ci right 1.178023e-02	k: 2608	n:230000
Cons ci ratio: 7.226390e-03	ci left: 5.592517e-01	ci right 5.633120e-01	k: 129095	n:230000
KS ci ratio: 1.294750e-01	ci left: 3.712476e-03	ci right 4.230582e-03	k: 912	n:230000
PREX1   230000 perm   98 sec   (2358 perm/sec)   p_kst 3.965217e-03   p_cons 5.612826e-01   p_joint 1.133913e-02

Joint ci ratio: 7.064482e-02	ci left: 1.221897e-02	ci right 1.311785e-02	k: 3039	n:240000
Cons ci ratio: 7.073512e-03	ci left: 5.593452e-01	ci right 5.633199e-01	k: 134720	n:240000
KS ci ratio: 1.260006e-01	ci left: 3.763506e-03	ci right 4.273587e-03	k: 963	n:240000
PREX1   240000 perm   103 sec   (2335 perm/sec)   p_kst 4.012500e-03   p_cons 5.613333e-01   p_joint 1.266250e-02

Joint ci ratio: 6.939157e-02	ci left: 1.216643e-02	ci right 1.304493e-02	k: 3150	n:250000
Cons ci ratio: 6.932082e-03	ci left: 5.592801e-01	ci right 5.631745e-01	k: 140307	n:250000
KS ci ratio: 1.235888e-01	ci left: 3.760220e-03	ci right 4.259387e-03	k: 1001	n:250000
PREX1   250000 perm   108 sec   (2312 perm/sec)   p_kst 4.004000e-03   p_cons 5.612280e-01   p_joint 1.260000e-02

Joint ci ratio: 6.984747e-02	ci left: 1.155097e-02	ci right 1.239073e-02	k: 3111	n:260000
Cons ci ratio: 6.796579e-03	ci left: 5.593823e-01	ci right 5.632009e-01	k: 145936	n:260000
KS ci ratio: 1.206714e-01	ci left: 3.798305e-03	ci right 4.289775e-03	k: 1050	n:260000
PREX1   260000 perm   114 sec   (2289 perm/sec)   p_kst 4.038462e-03   p_cons 5.612923e-01   p_joint 1.196538e-02

Joint ci ratio: 7.011430e-02	ci left: 1.104300e-02	ci right 1.184902e-02	k: 3089	n:270000
Cons ci ratio: 6.668874e-03	ci left: 5.594665e-01	ci right 5.632137e-01	k: 151562	n:270000
KS ci ratio: 1.193762e-01	ci left: 3.740248e-03	ci right 4.218644e-03	k: 1073	n:270000
PREX1   270000 perm   119 sec   (2268 perm/sec)   p_kst 3.974074e-03   p_cons 5.613407e-01   p_joint 1.144074e-02

Joint ci ratio: 6.956192e-02	ci left: 1.082402e-02	ci right 1.160758e-02	k: 3139	n:280000
Cons ci ratio: 6.547111e-03	ci left: 5.596204e-01	ci right 5.632998e-01	k: 157209	n:280000
KS ci ratio: 1.166366e-01	ci left: 3.783439e-03	ci right 4.255489e-03	k: 1124	n:280000
PREX1   280000 perm   125 sec   (2245 perm/sec)   p_kst 4.014286e-03   p_cons 5.614607e-01   p_joint 1.121071e-02

Joint ci ratio: 8.143058e-02	ci left: 7.604640e-03	ci right 8.253528e-03	k: 2298	n:290000
Cons ci ratio: 6.435520e-03	ci left: 5.594778e-01	ci right 5.630934e-01	k: 162773	n:290000
KS ci ratio: 1.180217e-01	ci left: 3.565928e-03	ci right 4.016491e-03	k: 1098	n:290000
PREX1   290000 perm   130 sec   (2224 perm/sec)   p_kst 3.786207e-03   p_cons 5.612862e-01   p_joint 7.924138e-03

Joint ci ratio: 7.931361e-02	ci left: 7.756202e-03	ci right 8.400022e-03	k: 2422	n:300000
Cons ci ratio: 6.328589e-03	ci left: 5.594120e-01	ci right 5.629668e-01	k: 168357	n:300000
KS ci ratio: 1.161353e-01	ci left: 3.563549e-03	ci right 4.006121e-03	k: 1134	n:300000
PREX1   300000 perm   136 sec   (2203 perm/sec)   p_kst 3.780000e-03   p_cons 5.611900e-01   p_joint 8.073333e-03

Joint ci ratio: 8.129142e-02	ci left: 7.142390e-03	ci right 7.750743e-03	k: 2307	n:310000
Cons ci ratio: 6.225186e-03	ci left: 5.594800e-01	ci right 5.629769e-01	k: 173981	n:310000
KS ci ratio: 1.144839e-01	ci left: 3.551976e-03	ci right 3.986414e-03	k: 1167	n:310000
PREX1   310000 perm   142 sec   (2182 perm/sec)   p_kst 3.764516e-03   p_cons 5.612290e-01   p_joint 7.441935e-03

Joint ci ratio: 8.006962e-02	ci left: 7.136588e-03	ci right 7.734884e-03	k: 2378	n:320000
Cons ci ratio: 6.123077e-03	ci left: 5.598349e-01	ci right 5.632764e-01	k: 179698	n:320000
KS ci ratio: 1.128067e-01	ci left: 3.547242e-03	ci right 3.974322e-03	k: 1202	n:320000
PREX1   320000 perm   148 sec   (2161 perm/sec)   p_kst 3.756250e-03   p_cons 5.615562e-01   p_joint 7.431250e-03

Joint ci ratio: 7.947525e-02	ci left: 7.027227e-03	ci right 7.611778e-03	k: 2414	n:330000
Cons ci ratio: 6.029425e-03	ci left: 5.598747e-01	ci right 5.632636e-01	k: 185318	n:330000
KS ci ratio: 1.116090e-01	ci left: 3.516323e-03	ci right 3.934890e-03	k: 1228	n:330000
PREX1   330000 perm   154 sec   (2141 perm/sec)   p_kst 3.721212e-03   p_cons 5.615697e-01   p_joint 7.315152e-03

Joint ci ratio: 7.838003e-02	ci left: 7.016595e-03	ci right 7.591851e-03	k: 2482	n:340000
Cons ci ratio: 5.937425e-03	ci left: 5.601214e-01	ci right 5.634599e-01	k: 191009	n:340000
KS ci ratio: 1.100970e-01	ci left: 3.510129e-03	ci right 3.921930e-03	k: 1262	n:340000
PREX1   340000 perm   160 sec   (2122 perm/sec)   p_kst 3.711765e-03   p_cons 5.617912e-01   p_joint 7.300000e-03

Joint ci ratio: 7.731362e-02	ci left: 7.009424e-03	ci right 7.575922e-03	k: 2551	n:350000
Cons ci ratio: 5.854059e-03	ci left: 5.599714e-01	ci right 5.632619e-01	k: 196566	n:350000
KS ci ratio: 1.078137e-01	ci left: 3.559926e-03	ci right 3.968358e-03	k: 1316	n:350000
PREX1   350000 perm   166 sec   (2103 perm/sec)   p_kst 3.760000e-03   p_cons 5.616171e-01   p_joint 7.288571e-03

Joint ci ratio: 7.555262e-02	ci left: 7.141699e-03	ci right 7.705163e-03	k: 2671	n:360000
Cons ci ratio: 5.601906e-03	ci left: 5.746866e-01	ci right 5.779177e-01	k: 207469	n:360000
KS ci ratio: 1.056280e-01	ci left: 3.609744e-03	ci right 4.014974e-03	k: 1371	n:360000
PREX1   360000 perm   173 sec   (2085 perm/sec)   p_kst 3.808333e-03   p_cons 5.763028e-01   p_joint 7.419444e-03

Joint ci ratio: 7.260765e-02	ci left: 7.532317e-03	ci right 8.102459e-03	k: 2891	n:370000
Cons ci ratio: 5.524862e-03	ci left: 5.747816e-01	ci right 5.779686e-01	k: 213259	n:370000
KS ci ratio: 1.041579e-01	ci left: 3.614824e-03	ci right 4.014631e-03	k: 1410	n:370000
PREX1   370000 perm   179 sec   (2065 perm/sec)   p_kst 3.810811e-03   p_cons 5.763757e-01   p_joint 7.813514e-03

Joint ci ratio: 7.199071e-02	ci left: 7.463288e-03	ci right 8.023204e-03	k: 2941	n:380000
Cons ci ratio: 5.452938e-03	ci left: 5.746901e-01	ci right 5.778350e-01	k: 218980	n:380000
KS ci ratio: 1.026410e-01	ci left: 3.627366e-03	ci right 4.022365e-03	k: 1452	n:380000
PREX1   380000 perm   186 sec   (2048 perm/sec)   p_kst 3.821053e-03   p_cons 5.762632e-01   p_joint 7.739474e-03

Joint ci ratio: 6.779382e-02	ci left: 8.211734e-03	ci right 8.790476e-03	k: 3314	n:390000
Cons ci ratio: 5.382282e-03	ci left: 5.747370e-01	ci right 5.778413e-01	k: 224753	n:390000
KS ci ratio: 1.013587e-01	ci left: 3.626808e-03	ci right 4.016519e-03	k: 1489	n:390000
PREX1   390000 perm   192 sec   (2031 perm/sec)   p_kst 3.817949e-03   p_cons 5.762897e-01   p_joint 8.497436e-03

Joint ci ratio: 6.740243e-02	ci left: 8.102278e-03	ci right 8.669879e-03	k: 3353	n:400000
Cons ci ratio: 5.315664e-03	ci left: 5.746568e-01	ci right 5.777221e-01	k: 230476	n:400000
KS ci ratio: 1.002222e-01	ci left: 3.618994e-03	ci right 4.003249e-03	k: 1523	n:400000
PREX1   400000 perm   198 sec   (2015 perm/sec)   p_kst 3.807500e-03   p_cons 5.761900e-01   p_joint 8.382500e-03

Joint ci ratio: 6.481010e-02	ci left: 8.557176e-03	ci right 9.132724e-03	k: 3625	n:410000
Cons ci ratio: 5.249466e-03	ci left: 5.747662e-01	ci right 5.777937e-01	k: 236275	n:410000
KS ci ratio: 9.880535e-02	ci left: 3.635374e-03	ci right 4.015594e-03	k: 1567	n:410000
PREX1   410000 perm   205 sec   (1999 perm/sec)   p_kst 3.821951e-03   p_cons 5.762805e-01   p_joint 8.841463e-03

Outputting figure to mutsig2_images.part000000000137/PREX1.21_5140_410000_0.003822_0.57628_0.0088415.png
                gene_name: PREX1
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.0088 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0091 

Current progress: 5 percent done.
PRKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
KS ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
PRKD1   10000 perm   2 sec   (4146 perm/sec)   p_kst 2.008000e-01   p_cons 3.720000e-02   p_joint 1.070000e-01

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
KS ci ratio: 5.438474e-02	ci left: 2.005615e-01	ci right 2.118241e-01	k: 4123	n:20000
PRKD1   20000 perm   5 sec   (3796 perm/sec)   p_kst 2.061500e-01   p_cons 3.675000e-02   p_joint 6.980000e-02

Joint ci ratio: 7.144246e-02	ci left: 8.793248e-02	ci right 9.448027e-02	k: 2735	n:30000
Cons ci ratio: 1.145520e-01	ci left: 3.541081e-02	ci right 3.974600e-02	k: 1126	n:30000
KS ci ratio: 4.464619e-02	ci left: 1.998489e-01	ci right 2.090085e-01	k: 6132	n:30000
PRKD1   30000 perm   8 sec   (3623 perm/sec)   p_kst 2.044000e-01   p_cons 3.753333e-02   p_joint 9.116667e-02

Joint ci ratio: 6.697939e-02	ci left: 7.622704e-02	ci right 8.153428e-02	k: 3154	n:40000
Cons ci ratio: 9.946929e-02	ci left: 3.551293e-02	ci right 3.925462e-02	k: 1494	n:40000
KS ci ratio: 3.880004e-02	ci left: 1.993404e-01	ci right 2.072528e-01	k: 8131	n:40000
PRKD1   40000 perm   11 sec   (3534 perm/sec)   p_kst 2.032750e-01   p_cons 3.735000e-02   p_joint 7.885000e-02

Outputting figure to mutsig2_images.part000000000137/PRKD1.16_2811_40000_0.20328_0.03735_0.07885.png
                gene_name: PRKD1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 7 percent done.
PREX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
PREX2   10000 perm   3 sec   (3468 perm/sec)   p_kst 3.010000e-02   p_cons 4.100000e-02   p_joint 9.300000e-03

Joint ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
Cons ci ratio: 1.327092e-01	ci left: 3.901975e-02	ci right 4.461445e-02	k: 835	n:20000
KS ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
PREX2   20000 perm   6 sec   (3212 perm/sec)   p_kst 2.975000e-02   p_cons 4.175000e-02   p_joint 1.155000e-02

Joint ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
Cons ci ratio: 1.065953e-01	ci left: 4.082963e-02	ci right 4.545937e-02	k: 1293	n:30000
KS ci ratio: 1.229612e-01	ci left: 3.074850e-02	ci right 3.480931e-02	k: 982	n:30000
PREX2   30000 perm   10 sec   (3116 perm/sec)   p_kst 3.273333e-02   p_cons 4.310000e-02   p_joint 1.966667e-02

Joint ci ratio: 1.550650e-01	ci left: 1.450452e-02	ci right 1.696651e-02	k: 628	n:40000
Cons ci ratio: 9.218437e-02	ci left: 4.125280e-02	ci right 4.526385e-02	k: 1729	n:40000
KS ci ratio: 1.066845e-01	ci left: 3.090553e-02	ci right 3.441275e-02	k: 1305	n:40000
PREX2   40000 perm   13 sec   (3050 perm/sec)   p_kst 3.262500e-02   p_cons 4.322500e-02   p_joint 1.570000e-02

Joint ci ratio: 1.618207e-01	ci left: 1.066069e-02	ci right 1.255665e-02	k: 579	n:50000
Cons ci ratio: 8.300556e-02	ci left: 4.092484e-02	ci right 4.448850e-02	k: 2134	n:50000
KS ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
PREX2   50000 perm   17 sec   (3003 perm/sec)   p_kst 3.208000e-02   p_cons 4.268000e-02   p_joint 1.158000e-02

Joint ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
Cons ci ratio: 7.595950e-02	ci left: 4.088334e-02	ci right 4.412776e-02	k: 2549	n:60000
KS ci ratio: 9.050682e-02	ci left: 2.894287e-02	ci right 3.170281e-02	k: 1818	n:60000
PREX2   60000 perm   20 sec   (2960 perm/sec)   p_kst 3.030000e-02   p_cons 4.248333e-02   p_joint 9.983333e-03

Joint ci ratio: 1.379723e-01	ci left: 1.061293e-02	ci right 1.219939e-02	k: 797	n:70000
Cons ci ratio: 7.046106e-02	ci left: 4.084892e-02	ci right 4.384631e-02	k: 2963	n:70000
KS ci ratio: 8.379652e-02	ci left: 2.904254e-02	ci right 3.159658e-02	k: 2121	n:70000
PREX2   70000 perm   24 sec   (2912 perm/sec)   p_kst 3.030000e-02   p_cons 4.232857e-02   p_joint 1.138571e-02

Joint ci ratio: 1.291330e-01	ci left: 1.065167e-02	ci right 1.213408e-02	k: 910	n:80000
Cons ci ratio: 6.572244e-02	ci left: 4.117401e-02	ci right 4.398429e-02	k: 3405	n:80000
KS ci ratio: 7.878989e-02	ci left: 2.882873e-02	ci right 3.120551e-02	k: 2400	n:80000
PREX2   80000 perm   28 sec   (2866 perm/sec)   p_kst 3.000000e-02   p_cons 4.256250e-02   p_joint 1.137500e-02

Joint ci ratio: 1.330300e-01	ci left: 8.919522e-03	ci right 1.020128e-02	k: 859	n:90000
Cons ci ratio: 6.175991e-02	ci left: 4.151968e-02	ci right 4.417656e-02	k: 3855	n:90000
KS ci ratio: 7.384987e-02	ci left: 2.923338e-02	ci right 3.148591e-02	k: 2731	n:90000
PREX2   90000 perm   32 sec   (2828 perm/sec)   p_kst 3.034444e-02   p_cons 4.283333e-02   p_joint 9.544444e-03

Joint ci ratio: 1.269809e-01	ci left: 8.840235e-03	ci right 1.004847e-02	k: 943	n:100000
Cons ci ratio: 5.867254e-02	ci left: 4.147490e-02	ci right 4.399171e-02	k: 4272	n:100000
KS ci ratio: 6.862271e-02	ci left: 3.051454e-02	ci right 3.269274e-02	k: 3159	n:100000
PREX2   100000 perm   36 sec   (2784 perm/sec)   p_kst 3.159000e-02   p_cons 4.272000e-02   p_joint 9.430000e-03

Joint ci ratio: 1.126837e-01	ci left: 1.026826e-02	ci right 1.150318e-02	k: 1196	n:110000
Cons ci ratio: 5.613763e-02	ci left: 4.125264e-02	ci right 4.364429e-02	k: 4668	n:110000
KS ci ratio: 6.556569e-02	ci left: 3.043985e-02	ci right 3.251222e-02	k: 3461	n:110000
PREX2   110000 perm   40 sec   (2751 perm/sec)   p_kst 3.146364e-02   p_cons 4.243636e-02   p_joint 1.087273e-02

Joint ci ratio: 1.021419e-01	ci left: 1.150530e-02	ci right 1.275178e-02	k: 1454	n:120000
Cons ci ratio: 5.378883e-02	ci left: 4.124215e-02	ci right 4.353003e-02	k: 5085	n:120000
KS ci ratio: 6.279780e-02	ci left: 3.046148e-02	ci right 3.244458e-02	k: 3773	n:120000
PREX2   120000 perm   44 sec   (2716 perm/sec)   p_kst 3.144167e-02   p_cons 4.237500e-02   p_joint 1.211667e-02

Joint ci ratio: 9.430950e-02	ci left: 1.249646e-02	ci right 1.374078e-02	k: 1704	n:130000
Cons ci ratio: 5.361212e-02	ci left: 3.844002e-02	ci right 4.056520e-02	k: 5134	n:130000
KS ci ratio: 6.012574e-02	ci left: 3.070875e-02	ci right 3.261991e-02	k: 4115	n:130000
PREX2   130000 perm   48 sec   (2685 perm/sec)   p_kst 3.165385e-02   p_cons 3.949231e-02   p_joint 1.310769e-02

Outputting figure to mutsig2_images.part000000000137/PREX2.15_5210_130000_0.031654_0.039492_0.013108.png
                gene_name: PREX2
               theta_stop: 0.094 
                    nperm: 130000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 8 percent done.
PRKCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.662397e-02	ci left: 8.404046e-01	ci right 8.545923e-01	k: 8476	n:10000
Cons ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
KS ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
PRKCB   10000 perm   2 sec   (4469 perm/sec)   p_kst 7.797000e-01   p_cons 5.957000e-01   p_joint 8.476000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCB.13_2247_10000_0.7797_0.5957_0.8476.png
                gene_name: PRKCB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 10 percent done.
PRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
Cons ci ratio: 1.053554e-02	ci left: 9.276122e-01	ci right 9.375340e-01	k: 9327	n:10000
KS ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
PRG4   10000 perm   2 sec   (4038 perm/sec)   p_kst 1.158000e-01   p_cons 9.327000e-01   p_joint 2.516000e-01

Joint ci ratio: 5.549718e-02	ci left: 1.940795e-01	ci right 2.052079e-01	k: 3992	n:20000
Cons ci ratio: 7.556837e-03	ci left: 9.272458e-01	ci right 9.343283e-01	k: 18617	n:20000
KS ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
PRG4   20000 perm   5 sec   (3687 perm/sec)   p_kst 1.198500e-01   p_cons 9.308500e-01   p_joint 1.996000e-01

Outputting figure to mutsig2_images.part000000000137/PRG4.12_4263_20000_0.11985_0.93085_0.1996.png
                gene_name: PRG4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
PRIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
Cons ci ratio: 1.042617e-02	ci left: 9.289561e-01	ci right 9.387893e-01	k: 9340	n:10000
KS ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
PRIM2   10000 perm   2 sec   (6131 perm/sec)   p_kst 5.620000e-02   p_cons 9.340000e-01   p_joint 9.500000e-02

Joint ci ratio: 8.073127e-02	ci left: 1.011769e-01	ci right 1.097382e-01	k: 2108	n:20000
Cons ci ratio: 7.629907e-03	ci left: 9.259667e-01	ci right 9.331078e-01	k: 18592	n:20000
KS ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
PRIM2   20000 perm   4 sec   (5360 perm/sec)   p_kst 5.960000e-02   p_cons 9.296000e-01   p_joint 1.054000e-01

Joint ci ratio: 6.030171e-02	ci left: 1.197311e-01	ci right 1.272087e-01	k: 3703	n:30000
Cons ci ratio: 6.179970e-03	ci left: 9.276996e-01	ci right 9.334833e-01	k: 27919	n:30000
KS ci ratio: 8.963224e-02	ci left: 5.724078e-02	ci right 6.264483e-02	k: 1797	n:30000
PRIM2   30000 perm   6 sec   (5075 perm/sec)   p_kst 5.990000e-02   p_cons 9.306333e-01   p_joint 1.234333e-01

Outputting figure to mutsig2_images.part000000000137/PRIM2.10_1582_30000_0.0599_0.93063_0.12343.png
                gene_name: PRIM2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 13 percent done.
PRKCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
Cons ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
KS ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
PRKCG   10000 perm   2 sec   (5106 perm/sec)   p_kst 1.850000e-02   p_cons 6.011000e-01   p_joint 8.020000e-02

Joint ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
Cons ci ratio: 2.229064e-02	ci left: 6.004416e-01	ci right 6.140272e-01	k: 12145	n:20000
KS ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
PRKCG   20000 perm   4 sec   (4572 perm/sec)   p_kst 1.840000e-02   p_cons 6.072500e-01   p_joint 6.680000e-02

Joint ci ratio: 9.123533e-02	ci left: 5.531599e-02	ci right 6.063668e-02	k: 1738	n:30000
Cons ci ratio: 1.812116e-02	ci left: 6.037853e-01	ci right 6.148602e-01	k: 18280	n:30000
KS ci ratio: 1.651492e-01	ci left: 1.690934e-02	ci right 1.998493e-02	k: 552	n:30000
PRKCG   30000 perm   7 sec   (4357 perm/sec)   p_kst 1.840000e-02   p_cons 6.093333e-01   p_joint 5.793333e-02

Joint ci ratio: 7.371652e-02	ci left: 6.358595e-02	ci right 6.847728e-02	k: 2640	n:40000
Cons ci ratio: 1.549426e-02	ci left: 6.106116e-01	ci right 6.201716e-01	k: 24616	n:40000
KS ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
PRKCG   40000 perm   9 sec   (4222 perm/sec)   p_kst 1.870000e-02   p_cons 6.154000e-01   p_joint 6.600000e-02

Joint ci ratio: 7.039212e-02	ci left: 5.634058e-02	ci right 6.047087e-02	k: 2919	n:50000
Cons ci ratio: 1.383574e-02	ci left: 6.119007e-01	ci right 6.204458e-01	k: 30809	n:50000
KS ci ratio: 1.287575e-01	ci left: 1.702698e-02	ci right 1.938942e-02	k: 909	n:50000
PRKCG   50000 perm   12 sec   (4118 perm/sec)   p_kst 1.818000e-02   p_cons 6.161800e-01   p_joint 5.838000e-02

Joint ci ratio: 7.438892e-02	ci left: 4.258549e-02	ci right 4.589211e-02	k: 2653	n:60000
Cons ci ratio: 1.262486e-02	ci left: 6.124786e-01	ci right 6.202768e-01	k: 36983	n:60000
KS ci ratio: 1.183700e-01	ci left: 1.688649e-02	ci right 1.902717e-02	k: 1076	n:60000
PRKCG   60000 perm   15 sec   (4036 perm/sec)   p_kst 1.793333e-02   p_cons 6.163833e-01   p_joint 4.421667e-02

Joint ci ratio: 7.448876e-02	ci left: 3.663775e-02	ci right 3.948642e-02	k: 2663	n:70000
Cons ci ratio: 1.169149e-02	ci left: 6.126428e-01	ci right 6.198619e-01	k: 43138	n:70000
KS ci ratio: 1.101486e-01	ci left: 1.679168e-02	ci right 1.876287e-02	k: 1243	n:70000
PRKCG   70000 perm   18 sec   (3960 perm/sec)   p_kst 1.775714e-02   p_cons 6.162571e-01   p_joint 3.804286e-02

Joint ci ratio: 6.652201e-02	ci left: 4.021445e-02	ci right 4.299391e-02	k: 3327	n:80000
Cons ci ratio: 1.091491e-02	ci left: 6.138088e-01	ci right 6.205577e-01	k: 49375	n:80000
KS ci ratio: 1.035069e-01	ci left: 1.670010e-02	ci right 1.853512e-02	k: 1408	n:80000
PRKCG   80000 perm   21 sec   (3884 perm/sec)   p_kst 1.760000e-02   p_cons 6.171875e-01   p_joint 4.158750e-02

Joint ci ratio: 6.707037e-02	ci left: 3.533888e-02	ci right 3.780222e-02	k: 3290	n:90000
Cons ci ratio: 1.030494e-02	ci left: 6.133474e-01	ci right 6.197117e-01	k: 55488	n:90000
KS ci ratio: 9.822395e-02	ci left: 1.653408e-02	ci right 1.825278e-02	k: 1564	n:90000
PRKCG   90000 perm   24 sec   (3819 perm/sec)   p_kst 1.737778e-02   p_cons 6.165333e-01   p_joint 3.655556e-02

Outputting figure to mutsig2_images.part000000000137/PRKCG.10_2166_90000_0.017378_0.61653_0.036556.png
                gene_name: PRKCG
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 15 percent done.
PRDM14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
PRDM14   10000 perm   2 sec   (5532 perm/sec)   p_kst 7.433000e-01   p_cons 6.692000e-01   p_joint 8.809000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM14.9_1744_10000_0.7433_0.6692_0.8809.png
                gene_name: PRDM14
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 16 percent done.
PRDM16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
Cons ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KS ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
PRDM16   10000 perm   2 sec   (4704 perm/sec)   p_kst 8.055000e-01   p_cons 4.754000e-01   p_joint 8.983000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM16.9_3899_10000_0.8055_0.4754_0.8983.png
                gene_name: PRDM16
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 18 percent done.
PRDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
Cons ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
KS ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
PRDM2   10000 perm   2 sec   (4336 perm/sec)   p_kst 7.218000e-01   p_cons 8.578000e-01   p_joint 8.691000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM2.8_5259_10000_0.7218_0.8578_0.8691.png
                gene_name: PRDM2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 20 percent done.
PRAMEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
Cons ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
PRAMEF4   10000 perm   2 sec   (5506 perm/sec)   p_kst 2.587000e-01   p_cons 5.778000e-01   p_joint 5.063000e-01

Outputting figure to mutsig2_images.part000000000137/PRAMEF4.7_1449_10000_0.2587_0.5778_0.5063.png
                gene_name: PRAMEF4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
PRDM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
Cons ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
KS ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
PRDM11   10000 perm   2 sec   (5678 perm/sec)   p_kst 4.712000e-01   p_cons 8.892000e-01   p_joint 6.395000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM11.7_1564_10000_0.4712_0.8892_0.6395.png
                gene_name: PRDM11
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 23 percent done.
PRDM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
KS ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
PRDM5   10000 perm   2 sec   (5298 perm/sec)   p_kst 3.369000e-01   p_cons 3.263000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM5.7_1957_10000_0.3369_0.3263_0.4079.png
                gene_name: PRDM5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 25 percent done.
PRELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
Cons ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
KS ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
PRELP   10000 perm   2 sec   (6100 perm/sec)   p_kst 2.421000e-01   p_cons 5.690000e-02   p_joint 1.122000e-01

Joint ci ratio: 7.547245e-02	ci left: 1.143465e-01	ci right 1.233646e-01	k: 2376	n:20000
Cons ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
KS ci ratio: 4.922394e-02	ci left: 2.347882e-01	ci right 2.466873e-01	k: 4814	n:20000
PRELP   20000 perm   4 sec   (5345 perm/sec)   p_kst 2.407000e-01   p_cons 5.395000e-02   p_joint 1.188000e-01

Joint ci ratio: 6.936947e-02	ci left: 9.285308e-02	ci right 9.955869e-02	k: 2885	n:30000
Cons ci ratio: 8.889821e-02	ci left: 5.815453e-02	ci right 6.359756e-02	k: 1825	n:30000
KS ci ratio: 4.013823e-02	ci left: 2.363675e-01	ci right 2.460826e-01	k: 7236	n:30000
PRELP   30000 perm   6 sec   (5084 perm/sec)   p_kst 2.412000e-01   p_cons 6.083333e-02   p_joint 9.616667e-02

Outputting figure to mutsig2_images.part000000000137/PRELP.7_1157_30000_0.2412_0.060833_0.096167.png
                gene_name: PRELP
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 26 percent done.
PREPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
PREPL   10000 perm   2 sec   (5437 perm/sec)   p_kst 6.010000e-02   p_cons 9.051000e-01   p_joint 1.236000e-01

Joint ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
Cons ci ratio: 9.034226e-03	ci left: 8.998333e-01	ci right 9.080488e-01	k: 18080	n:20000
KS ci ratio: 1.078120e-01	ci left: 5.864794e-02	ci right 6.538009e-02	k: 1239	n:20000
PREPL   20000 perm   4 sec   (4829 perm/sec)   p_kst 6.195000e-02   p_cons 9.040000e-01   p_joint 1.181000e-01

Joint ci ratio: 6.226426e-02	ci left: 1.130546e-01	ci right 1.203531e-01	k: 3500	n:30000
Cons ci ratio: 7.316402e-03	ci left: 9.020322e-01	ci right 9.086890e-01	k: 27162	n:30000
KS ci ratio: 8.742900e-02	ci left: 6.004786e-02	ci right 6.557051e-02	k: 1883	n:30000
PREPL   30000 perm   7 sec   (4600 perm/sec)   p_kst 6.276667e-02   p_cons 9.054000e-01   p_joint 1.166667e-01

Outputting figure to mutsig2_images.part000000000137/PREPL.7_2240_30000_0.062767_0.9054_0.11667.png
                gene_name: PREPL
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 28 percent done.
PRKCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
KS ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
PRKCA   10000 perm   2 sec   (5537 perm/sec)   p_kst 3.934000e-01   p_cons 3.230000e-02   p_joint 7.310000e-02

Joint ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 3.495943e-02	ci left: 3.791951e-01	ci right 3.927380e-01	k: 7719	n:20000
PRKCA   20000 perm   4 sec   (4930 perm/sec)   p_kst 3.859500e-01   p_cons 3.045000e-02   p_joint 1.072000e-01

Joint ci ratio: 6.734808e-02	ci left: 9.803910e-02	ci right 1.049050e-01	k: 3043	n:30000
Cons ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
KS ci ratio: 2.812125e-02	ci left: 3.875336e-01	ci right 3.986205e-01	k: 11792	n:30000
PRKCA   30000 perm   6 sec   (4688 perm/sec)   p_kst 3.930667e-01   p_cons 3.043333e-02   p_joint 1.014333e-01

Joint ci ratio: 5.827475e-02	ci left: 9.865576e-02	ci right 1.046022e-01	k: 4064	n:40000
Cons ci ratio: 1.109260e-01	ci left: 2.859321e-02	ci right 3.197544e-02	k: 1210	n:40000
KS ci ratio: 2.438306e-02	ci left: 3.877101e-01	ci right 3.973055e-01	k: 15700	n:40000
PRKCA   40000 perm   9 sec   (4512 perm/sec)   p_kst 3.925000e-01   p_cons 3.025000e-02   p_joint 1.016000e-01

Joint ci ratio: 5.282110e-02	ci left: 9.659313e-02	ci right 1.018535e-01	k: 4960	n:50000
Cons ci ratio: 9.893775e-02	ci left: 2.893197e-02	ci right 3.196287e-02	k: 1521	n:50000
KS ci ratio: 2.181183e-02	ci left: 3.881563e-01	ci right 3.967361e-01	k: 19622	n:50000
PRKCA   50000 perm   11 sec   (4381 perm/sec)   p_kst 3.924400e-01   p_cons 3.042000e-02   p_joint 9.920000e-02

Outputting figure to mutsig2_images.part000000000137/PRKCA.7_2087_50000_0.39244_0.03042_0.0992.png
                gene_name: PRKCA
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 30 percent done.
PRKCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
Cons ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
KS ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
PRKCI   10000 perm   2 sec   (5091 perm/sec)   p_kst 7.305000e-01   p_cons 2.809000e-01   p_joint 6.210000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCI.7_1863_10000_0.7305_0.2809_0.621.png
                gene_name: PRKCI
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 31 percent done.
PRKG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
KS ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
PRKG2   10000 perm   2 sec   (4849 perm/sec)   p_kst 1.290000e-02   p_cons 6.278000e-01   p_joint 4.000000e-02

Joint ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
Cons ci ratio: 2.144908e-02	ci left: 6.186993e-01	ci right 6.321642e-01	k: 12509	n:20000
KS ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
PRKG2   20000 perm   5 sec   (4348 perm/sec)   p_kst 1.245000e-02   p_cons 6.254500e-01   p_joint 3.805000e-02

Joint ci ratio: 1.137677e-01	ci left: 3.589704e-02	ci right 4.025967e-02	k: 1141	n:30000
Cons ci ratio: 1.742566e-02	ci left: 6.223012e-01	ci right 6.332741e-01	k: 18834	n:30000
KS ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
PRKG2   30000 perm   7 sec   (4161 perm/sec)   p_kst 1.293333e-02   p_cons 6.278000e-01   p_joint 3.803333e-02

Joint ci ratio: 9.664986e-02	ci left: 3.758775e-02	ci right 4.142947e-02	k: 1579	n:40000
Cons ci ratio: 1.512511e-02	ci left: 6.219886e-01	ci right 6.314930e-01	k: 25070	n:40000
KS ci ratio: 1.706141e-01	ci left: 1.191290e-02	ci right 1.415862e-02	k: 520	n:40000
PRKG2   40000 perm   10 sec   (4046 perm/sec)   p_kst 1.300000e-02   p_cons 6.267500e-01   p_joint 3.947500e-02

Joint ci ratio: 8.869128e-02	ci left: 3.592994e-02	ci right 3.928402e-02	k: 1879	n:50000
Cons ci ratio: 1.350554e-02	ci left: 6.232851e-01	ci right 6.317801e-01	k: 31377	n:50000
KS ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
PRKG2   50000 perm   13 sec   (3955 perm/sec)   p_kst 1.282000e-02   p_cons 6.275400e-01   p_joint 3.758000e-02

Joint ci ratio: 9.211190e-02	ci left: 2.794875e-02	ci right 3.066370e-02	k: 1757	n:60000
Cons ci ratio: 1.235717e-02	ci left: 6.225816e-01	ci right 6.303395e-01	k: 37588	n:60000
KS ci ratio: 1.399886e-01	ci left: 1.199628e-02	ci right 1.381796e-02	k: 773	n:60000
PRKG2   60000 perm   15 sec   (3877 perm/sec)   p_kst 1.288333e-02   p_cons 6.264667e-01   p_joint 2.928333e-02

Joint ci ratio: 9.130317e-02	ci left: 2.448445e-02	ci right 2.684081e-02	k: 1795	n:70000
Cons ci ratio: 1.143764e-02	ci left: 6.229901e-01	ci right 6.301709e-01	k: 43861	n:70000
KS ci ratio: 1.292424e-01	ci left: 1.213247e-02	ci right 1.382254e-02	k: 907	n:70000
PRKG2   70000 perm   18 sec   (3794 perm/sec)   p_kst 1.295714e-02   p_cons 6.265857e-01   p_joint 2.564286e-02

Joint ci ratio: 8.742901e-02	ci left: 2.343975e-02	ci right 2.559492e-02	k: 1960	n:80000
Cons ci ratio: 1.069691e-02	ci left: 6.233125e-01	ci right 6.300283e-01	k: 50134	n:80000
KS ci ratio: 1.241934e-01	ci left: 1.153558e-02	ci right 1.307509e-02	k: 983	n:80000
PRKG2   80000 perm   21 sec   (3729 perm/sec)   p_kst 1.228750e-02   p_cons 6.266750e-01   p_joint 2.450000e-02

Joint ci ratio: 8.798777e-02	ci left: 2.062752e-02	ci right 2.253683e-02	k: 1941	n:90000
Cons ci ratio: 1.007695e-02	ci left: 6.238866e-01	ci right 6.302164e-01	k: 56435	n:90000
KS ci ratio: 1.162431e-01	ci left: 1.175196e-02	ci right 1.321305e-02	k: 1122	n:90000
PRKG2   90000 perm   25 sec   (3666 perm/sec)   p_kst 1.246667e-02   p_cons 6.270556e-01   p_joint 2.156667e-02

Joint ci ratio: 8.476183e-02	ci left: 2.005168e-02	ci right 2.183626e-02	k: 2093	n:100000
Cons ci ratio: 9.573865e-03	ci left: 6.233630e-01	ci right 6.293697e-01	k: 62637	n:100000
KS ci ratio: 1.099562e-01	ci left: 1.185947e-02	ci right 1.324902e-02	k: 1254	n:100000
PRKG2   100000 perm   28 sec   (3606 perm/sec)   p_kst 1.254000e-02   p_cons 6.263700e-01   p_joint 2.093000e-02

Joint ci ratio: 8.195844e-02	ci left: 1.953709e-02	ci right 2.121560e-02	k: 2240	n:110000
Cons ci ratio: 9.123668e-03	ci left: 6.237428e-01	ci right 6.294687e-01	k: 68927	n:110000
KS ci ratio: 1.044377e-01	ci left: 1.198460e-02	ci right 1.331400e-02	k: 1390	n:110000
PRKG2   110000 perm   31 sec   (3542 perm/sec)   p_kst 1.263636e-02   p_cons 6.266091e-01   p_joint 2.036364e-02

Joint ci ratio: 7.233017e-02	ci left: 2.302680e-02	ci right 2.476298e-02	k: 2866	n:120000
Cons ci ratio: 8.734023e-03	ci left: 6.239311e-01	ci right 6.294127e-01	k: 75201	n:120000
KS ci ratio: 9.987338e-02	ci left: 1.204156e-02	ci right 1.331548e-02	k: 1520	n:120000
PRKG2   120000 perm   34 sec   (3487 perm/sec)   p_kst 1.266667e-02   p_cons 6.266750e-01   p_joint 2.388333e-02

Outputting figure to mutsig2_images.part000000000137/PRKG2.7_2361_120000_0.012667_0.62667_0.023883.png
                gene_name: PRKG2
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 33 percent done.
PRDM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
Cons ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
KS ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
PRDM4   10000 perm   2 sec   (5167 perm/sec)   p_kst 8.658000e-01   p_cons 3.188000e-01   p_joint 7.083000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM4.6_2450_10000_0.8658_0.3188_0.7083.png
                gene_name: PRDM4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 34 percent done.
PRIC285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
Cons ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
KS ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
PRIC285   10000 perm   3 sec   (3247 perm/sec)   p_kst 3.868000e-01   p_cons 8.838000e-01   p_joint 5.758000e-01

Outputting figure to mutsig2_images.part000000000137/PRIC285.6_8049_10000_0.3868_0.8838_0.5758.png
                gene_name: PRIC285
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 36 percent done.
PRKAR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
Cons ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
PRKAR1B   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.995000e-01   p_cons 2.832000e-01   p_joint 7.044000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAR1B.6_1186_10000_0.8995_0.2832_0.7044.png
                gene_name: PRKAR1B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 38 percent done.
PRKRIR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
Cons ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
KS ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
PRKRIR   10000 perm   2 sec   (5441 perm/sec)   p_kst 3.586000e-01   p_cons 2.008000e-01   p_joint 2.064000e-01

Outputting figure to mutsig2_images.part000000000137/PRKRIR.6_2306_10000_0.3586_0.2008_0.2064.png
                gene_name: PRKRIR
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
PRDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
Cons ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
KS ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
PRDM1   10000 perm   2 sec   (5112 perm/sec)   p_kst 3.903000e-01   p_cons 3.350000e-01   p_joint 5.589000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM1.5_2519_10000_0.3903_0.335_0.5589.png
                gene_name: PRDM1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 41 percent done.
PRDM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
Cons ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
PRDM10   10000 perm   2 sec   (4886 perm/sec)   p_kst 1.394000e-01   p_cons 8.063000e-01   p_joint 3.763000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM10.5_3603_10000_0.1394_0.8063_0.3763.png
                gene_name: PRDM10
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 43 percent done.
PREP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
Cons ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
KS ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
PREP   10000 perm   2 sec   (5676 perm/sec)   p_kst 2.524000e-01   p_cons 1.223000e-01   p_joint 3.539000e-01

Joint ci ratio: 5.625515e-02	ci left: 1.898254e-01	ci right 2.008633e-01	k: 3906	n:20000
Cons ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
KS ci ratio: 4.828643e-02	ci left: 2.418286e-01	ci right 2.538448e-01	k: 4956	n:20000
PREP   20000 perm   4 sec   (4954 perm/sec)   p_kst 2.478000e-01   p_cons 1.193500e-01   p_joint 1.953000e-01

Outputting figure to mutsig2_images.part000000000137/PREP.5_2193_20000_0.2478_0.11935_0.1953.png
                gene_name: PREP
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 44 percent done.
PRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
PRF1   10000 perm   2 sec   (5861 perm/sec)   p_kst 5.824000e-01   p_cons 5.560000e-02   p_joint 9.690000e-02

Joint ci ratio: 5.293276e-02	ci left: 2.094717e-01	ci right 2.209112e-01	k: 4303	n:20000
Cons ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
KS ci ratio: 2.360548e-02	ci left: 5.727227e-01	ci right 5.864542e-01	k: 11592	n:20000
PRF1   20000 perm   4 sec   (5169 perm/sec)   p_kst 5.796000e-01   p_cons 5.530000e-02   p_joint 2.151500e-01

Joint ci ratio: 5.070386e-02	ci left: 1.619044e-01	ci right 1.703604e-01	k: 4983	n:30000
Cons ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
KS ci ratio: 1.902087e-02	ci left: 5.804350e-01	ci right 5.916150e-01	k: 17581	n:30000
PRF1   30000 perm   6 sec   (4925 perm/sec)   p_kst 5.860333e-01   p_cons 5.470000e-02   p_joint 1.661000e-01

Outputting figure to mutsig2_images.part000000000137/PRF1.5_1676_30000_0.58603_0.0547_0.1661.png
                gene_name: PRF1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 46 percent done.
PRICKLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.766434e-02	ci left: 5.100533e-01	ci right 5.297351e-01	k: 5199	n:10000
Cons ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KS ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
PRICKLE1   10000 perm   2 sec   (5147 perm/sec)   p_kst 4.498000e-01   p_cons 3.682000e-01   p_joint 5.199000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE1.5_2524_10000_0.4498_0.3682_0.5199.png
                gene_name: PRICKLE1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
PRKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
Cons ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
KS ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
PRKD2   10000 perm   2 sec   (5251 perm/sec)   p_kst 2.854000e-01   p_cons 7.690000e-02   p_joint 1.330000e-01

Joint ci ratio: 5.043167e-02	ci left: 2.261147e-01	ci right 2.378633e-01	k: 4639	n:20000
Cons ci ratio: 9.695863e-02	ci left: 7.187539e-02	ci right 7.924857e-02	k: 1510	n:20000
KS ci ratio: 4.396285e-02	ci left: 2.781545e-01	ci right 2.907082e-01	k: 5688	n:20000
PRKD2   20000 perm   4 sec   (4716 perm/sec)   p_kst 2.844000e-01   p_cons 7.550000e-02   p_joint 2.319500e-01

Outputting figure to mutsig2_images.part000000000137/PRKD2.5_2709_20000_0.2844_0.0755_0.23195.png
                gene_name: PRKD2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 49 percent done.
PRKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
Cons ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
KS ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
PRKD3   10000 perm   2 sec   (4985 perm/sec)   p_kst 2.382000e-01   p_cons 5.874000e-01   p_joint 4.059000e-01

Outputting figure to mutsig2_images.part000000000137/PRKD3.5_2745_10000_0.2382_0.5874_0.4059.png
                gene_name: PRKD3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 51 percent done.
PRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
Cons ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
KS ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
PRB4   10000 perm   1 sec   (6854 perm/sec)   p_kst 1.750000e-02   p_cons 5.881000e-01   p_joint 7.620000e-02

Joint ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
Cons ci ratio: 2.310773e-02	ci left: 5.830959e-01	ci right 5.967780e-01	k: 11799	n:20000
KS ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
PRB4   20000 perm   3 sec   (5978 perm/sec)   p_kst 1.725000e-02   p_cons 5.899500e-01   p_joint 1.109000e-01

Joint ci ratio: 8.650189e-02	ci left: 6.128872e-02	ci right 6.686273e-02	k: 1921	n:30000
Cons ci ratio: 1.799076e-02	ci left: 6.072271e-01	ci right 6.182843e-01	k: 18383	n:30000
KS ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
PRB4   30000 perm   5 sec   (5638 perm/sec)   p_kst 1.746667e-02   p_cons 6.127667e-01   p_joint 6.403333e-02

Joint ci ratio: 7.142669e-02	ci left: 6.751839e-02	ci right 7.254425e-02	k: 2800	n:40000
Cons ci ratio: 1.634010e-02	ci left: 5.851111e-01	ci right 5.947758e-01	k: 23598	n:40000
KS ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
PRB4   40000 perm   7 sec   (5422 perm/sec)   p_kst 1.712500e-02   p_cons 5.899500e-01   p_joint 7.000000e-02

Joint ci ratio: 4.992629e-02	ci left: 1.070130e-01	ci right 1.125124e-01	k: 5487	n:50000
Cons ci ratio: 1.383574e-02	ci left: 6.119007e-01	ci right 6.204458e-01	k: 30809	n:50000
KS ci ratio: 1.335458e-01	ci left: 1.580765e-02	ci right 1.808893e-02	k: 846	n:50000
PRB4   50000 perm   10 sec   (5259 perm/sec)   p_kst 1.692000e-02   p_cons 6.161800e-01   p_joint 1.097400e-01

Joint ci ratio: 4.634107e-02	ci left: 1.040755e-01	ci right 1.090293e-01	k: 6392	n:60000
Cons ci ratio: 1.258307e-02	ci left: 6.140482e-01	ci right 6.218404e-01	k: 37077	n:60000
KS ci ratio: 1.218128e-01	ci left: 1.593221e-02	ci right 1.801489e-02	k: 1017	n:60000
PRB4   60000 perm   12 sec   (5120 perm/sec)   p_kst 1.695000e-02   p_cons 6.179500e-01   p_joint 1.065333e-01

Joint ci ratio: 4.401646e-02	ci left: 9.952690e-02	ci right 1.040205e-01	k: 7123	n:70000
Cons ci ratio: 1.167808e-02	ci left: 6.131866e-01	ci right 6.204037e-01	k: 43176	n:70000
KS ci ratio: 1.111998e-01	ci left: 1.647205e-02	ci right 1.842539e-02	k: 1220	n:70000
PRB4   70000 perm   14 sec   (4993 perm/sec)   p_kst 1.742857e-02   p_cons 6.168000e-01   p_joint 1.017571e-01

Joint ci ratio: 4.605130e-02	ci left: 8.113427e-02	ci right 8.497103e-02	k: 6643	n:80000
Cons ci ratio: 1.092588e-02	ci left: 6.133330e-01	ci right 6.200835e-01	k: 49337	n:80000
KS ci ratio: 1.037696e-01	ci left: 1.661483e-02	ci right 1.844540e-02	k: 1401	n:80000
PRB4   80000 perm   16 sec   (4880 perm/sec)   p_kst 1.751250e-02   p_cons 6.167125e-01   p_joint 8.303750e-02

Joint ci ratio: 6.097924e-02	ci left: 4.255974e-02	ci right 4.524754e-02	k: 3950	n:90000
Cons ci ratio: 1.031487e-02	ci left: 6.128912e-01	ci right 6.192569e-01	k: 55447	n:90000
KS ci ratio: 9.777980e-02	ci left: 1.668589e-02	ci right 1.841208e-02	k: 1578	n:90000
PRB4   90000 perm   19 sec   (4776 perm/sec)   p_kst 1.753333e-02   p_cons 6.160778e-01   p_joint 4.388889e-02

Outputting figure to mutsig2_images.part000000000137/PRB4.4_756_90000_0.017533_0.61608_0.043889.png
                gene_name: PRB4
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 52 percent done.
PRCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
Cons ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
PRCP   10000 perm   2 sec   (6298 perm/sec)   p_kst 4.130000e-02   p_cons 1.680000e-02   p_joint 1.780000e-02

Joint ci ratio: 1.642181e-01	ci left: 2.542143e-02	ci right 3.001725e-02	k: 553	n:20000
Cons ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
KS ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
PRCP   20000 perm   4 sec   (5549 perm/sec)   p_kst 4.205000e-02   p_cons 1.940000e-02   p_joint 2.765000e-02

Joint ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
Cons ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
KS ci ratio: 1.094088e-01	ci left: 3.878406e-02	ci right 4.330537e-02	k: 1230	n:30000
PRCP   30000 perm   6 sec   (5236 perm/sec)   p_kst 4.100000e-02   p_cons 1.963333e-02   p_joint 1.876667e-02

Joint ci ratio: 1.273883e-01	ci left: 2.165006e-02	ci right 2.461973e-02	k: 924	n:40000
Cons ci ratio: 1.302267e-01	ci left: 2.070581e-02	ci right 2.361413e-02	k: 885	n:40000
KS ci ratio: 9.357813e-02	ci left: 4.005507e-02	ci right 4.401176e-02	k: 1680	n:40000
PRCP   40000 perm   8 sec   (5048 perm/sec)   p_kst 4.200000e-02   p_cons 2.212500e-02   p_joint 2.310000e-02

Joint ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
Cons ci ratio: 1.167755e-01	ci left: 2.075152e-02	ci right 2.334438e-02	k: 1101	n:50000
KS ci ratio: 8.387103e-02	ci left: 4.010164e-02	ci right 4.363180e-02	k: 2092	n:50000
PRCP   50000 perm   10 sec   (4900 perm/sec)   p_kst 4.184000e-02   p_cons 2.202000e-02   p_joint 1.432000e-02

Joint ci ratio: 1.466594e-01	ci left: 1.090311e-02	ci right 1.264459e-02	k: 705	n:60000
Cons ci ratio: 1.069074e-01	ci left: 2.074376e-02	ci right 2.310280e-02	k: 1314	n:60000
KS ci ratio: 7.641442e-02	ci left: 4.040884e-02	ci right 4.363565e-02	k: 2520	n:60000
PRCP   60000 perm   13 sec   (4767 perm/sec)   p_kst 4.200000e-02   p_cons 2.190000e-02   p_joint 1.175000e-02

Joint ci ratio: 1.589446e-01	ci left: 7.929261e-03	ci right 9.311934e-03	k: 602	n:70000
Cons ci ratio: 1.052970e-01	ci left: 1.839106e-02	ci right 2.044905e-02	k: 1358	n:70000
KS ci ratio: 7.133249e-02	ci left: 3.987996e-02	ci right 4.284392e-02	k: 2894	n:70000
PRCP   70000 perm   15 sec   (4649 perm/sec)   p_kst 4.134286e-02   p_cons 1.940000e-02   p_joint 8.600000e-03

Joint ci ratio: 7.570784e-02	ci left: 3.119606e-02	ci right 3.366300e-02	k: 2593	n:80000
Cons ci ratio: 9.843644e-02	ci left: 1.847984e-02	ci right 2.040523e-02	k: 1554	n:80000
KS ci ratio: 6.638683e-02	ci left: 4.037437e-02	ci right 4.315899e-02	k: 3340	n:80000
PRCP   80000 perm   18 sec   (4535 perm/sec)   p_kst 4.175000e-02   p_cons 1.942500e-02   p_joint 3.241250e-02

Outputting figure to mutsig2_images.part000000000137/PRCP.4_1594_80000_0.04175_0.019425_0.032412.png
                gene_name: PRCP
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 54 percent done.
PRDM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
PRDM15   10000 perm   2 sec   (4500 perm/sec)   p_kst 7.025000e-01   p_cons 5.680000e-02   p_joint 2.753000e-01

Joint ci ratio: 5.605020e-02	ci left: 1.909630e-01	ci right 2.020253e-01	k: 3929	n:20000
Cons ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
KS ci ratio: 1.792337e-02	ci left: 6.987761e-01	ci right 7.114642e-01	k: 14103	n:20000
PRDM15   20000 perm   5 sec   (4081 perm/sec)   p_kst 7.051500e-01   p_cons 6.330000e-02   p_joint 1.964500e-01

Joint ci ratio: 4.496432e-02	ci left: 1.975683e-01	ci right 2.066895e-01	k: 6063	n:30000
Cons ci ratio: 8.642984e-02	ci left: 6.138670e-02	ci right 6.696474e-02	k: 1924	n:30000
KS ci ratio: 1.456122e-02	ci left: 7.020477e-01	ci right 7.123788e-01	k: 21217	n:30000
PRDM15   30000 perm   8 sec   (3861 perm/sec)   p_kst 7.072333e-01   p_cons 6.413333e-02   p_joint 2.021000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM15.4_4648_30000_0.70723_0.064133_0.2021.png
                gene_name: PRDM15
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
PRICKLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
Cons ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
PRICKLE3   10000 perm   2 sec   (5754 perm/sec)   p_kst 9.950000e-02   p_cons 8.966000e-01   p_joint 1.656000e-01

Joint ci ratio: 5.846893e-02	ci left: 1.781074e-01	ci right 1.888848e-01	k: 3669	n:20000
Cons ci ratio: 8.995155e-03	ci left: 9.005975e-01	ci right 9.087844e-01	k: 18095	n:20000
KS ci ratio: 8.317725e-02	ci left: 9.577751e-02	ci right 1.041392e-01	k: 1998	n:20000
PRICKLE3   20000 perm   4 sec   (5046 perm/sec)   p_kst 9.990000e-02   p_cons 9.047500e-01   p_joint 1.834500e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE3.4_1884_20000_0.0999_0.90475_0.18345.png
                gene_name: PRICKLE3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 57 percent done.
PRKAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
Cons ci ratio: 3.065336e-02	ci left: 6.109050e-01	ci right 6.300247e-01	k: 6205	n:10000
KS ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
PRKAA1   10000 perm   2 sec   (5817 perm/sec)   p_kst 2.911000e-01   p_cons 6.205000e-01   p_joint 6.461000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAA1.4_1765_10000_0.2911_0.6205_0.6461.png
                gene_name: PRKAA1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 59 percent done.
PRKAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
KS ci ratio: 7.978778e-03	ci left: 9.562867e-01	ci right 9.640423e-01	k: 9603	n:10000
PRKAG2   10000 perm   2 sec   (5797 perm/sec)   p_kst 9.603000e-01   p_cons 6.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKAG2.4_1774_10000_0.9603_0.6629_1.png
                gene_name: PRKAG2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
PRKAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.946150e-02	ci left: 4.867526e-01	ci right 5.064494e-01	k: 4966	n:10000
Cons ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
KS ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
PRKAG3   10000 perm   2 sec   (5964 perm/sec)   p_kst 5.383000e-01   p_cons 4.184000e-01   p_joint 4.966000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAG3.4_1522_10000_0.5383_0.4184_0.4966.png
                gene_name: PRKAG3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 62 percent done.
PRKCQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
KS ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
PRKCQ   10000 perm   2 sec   (5569 perm/sec)   p_kst 2.442000e-01   p_cons 2.063000e-01   p_joint 2.061000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCQ.4_2189_10000_0.2442_0.2063_0.2061.png
                gene_name: PRKCQ
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
PRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
KS ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
PRAP1   10000 perm   1 sec   (6911 perm/sec)   p_kst 8.980000e-01   p_cons 5.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRAP1.3_476_10000_0.898_0.5483_1.png
                gene_name: PRAP1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
PRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
PRB1   10000 perm   1 sec   (6702 perm/sec)   p_kst 7.987000e-01   p_cons 4.613000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRB1.3_1008_10000_0.7987_0.4613_1.png
                gene_name: PRB1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 7.525856e-02	ci left: 2.053056e-01	ci right 2.214617e-01	k: 2133	n:10000
PRB3   10000 perm   2 sec   (6456 perm/sec)   p_kst 2.133000e-01   p_cons 8.819000e-01   p_joint 4.414000e-01

Outputting figure to mutsig2_images.part000000000137/PRB3.3_946_10000_0.2133_0.8819_0.4414.png
                gene_name: PRB3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 69 percent done.
PRCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
KS ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
PRCC   10000 perm   2 sec   (6097 perm/sec)   p_kst 6.765000e-01   p_cons 1.690000e-02   p_joint 6.870000e-02

Joint ci ratio: 8.474023e-02	ci left: 9.253972e-02	ci right 1.007780e-01	k: 1932	n:20000
Cons ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
KS ci ratio: 1.920884e-02	ci left: 6.690115e-01	ci right 6.820375e-01	k: 13511	n:20000
PRCC   20000 perm   4 sec   (5271 perm/sec)   p_kst 6.755500e-01   p_cons 1.695000e-02   p_joint 9.660000e-02

Joint ci ratio: 6.074218e-02	ci left: 1.181850e-01	ci right 1.256218e-01	k: 3656	n:30000
Cons ci ratio: 1.727866e-01	ci left: 1.540785e-02	ci right 1.835345e-02	k: 505	n:30000
KS ci ratio: 1.563347e-02	ci left: 6.716414e-01	ci right 6.822577e-01	k: 20309	n:30000
PRCC   30000 perm   6 sec   (5022 perm/sec)   p_kst 6.769667e-01   p_cons 1.683333e-02   p_joint 1.218667e-01

Joint ci ratio: 5.166748e-02	ci left: 1.225402e-01	ci right 1.290643e-01	k: 5031	n:40000
Cons ci ratio: 1.517883e-01	ci left: 1.515398e-02	ci right 1.766693e-02	k: 655	n:40000
KS ci ratio: 1.350709e-02	ci left: 6.733958e-01	ci right 6.825783e-01	k: 27120	n:40000
PRCC   40000 perm   8 sec   (4871 perm/sec)   p_kst 6.780000e-01   p_cons 1.637500e-02   p_joint 1.257750e-01

Joint ci ratio: 4.055776e-02	ci left: 1.542179e-01	ci right 1.606220e-01	k: 7870	n:50000
Cons ci ratio: 1.356798e-01	ci left: 1.530489e-02	ci right 1.755176e-02	k: 820	n:50000
KS ci ratio: 1.213929e-02	ci left: 6.717774e-01	ci right 6.800021e-01	k: 33795	n:50000
PRCC   50000 perm   11 sec   (4746 perm/sec)   p_kst 6.759000e-01   p_cons 1.640000e-02   p_joint 1.574000e-01

Joint ci ratio: 3.832861e-02	ci left: 1.455973e-01	ci right 1.513034e-01	k: 8906	n:60000
Cons ci ratio: 1.233628e-01	ci left: 1.552812e-02	ci right 1.758569e-02	k: 992	n:60000
KS ci ratio: 1.112086e-02	ci left: 6.705837e-01	ci right 6.780995e-01	k: 40461	n:60000
PRCC   60000 perm   13 sec   (4635 perm/sec)   p_kst 6.743500e-01   p_cons 1.653333e-02   p_joint 1.484333e-01

Joint ci ratio: 3.691001e-02	ci left: 1.362041e-01	ci right 1.413401e-01	k: 9713	n:70000
Cons ci ratio: 1.131002e-01	ci left: 1.591639e-02	ci right 1.783824e-02	k: 1180	n:70000
KS ci ratio: 1.027902e-02	ci left: 6.715876e-01	ci right 6.785408e-01	k: 47255	n:70000
PRCC   70000 perm   15 sec   (4537 perm/sec)   p_kst 6.750714e-01   p_cons 1.685714e-02   p_joint 1.387571e-01

Joint ci ratio: 3.190549e-02	ci left: 1.561990e-01	ci right 1.612758e-01	k: 12698	n:80000
Cons ci ratio: 1.058640e-01	ci left: 1.595724e-02	ci right 1.775305e-02	k: 1347	n:80000
KS ci ratio: 9.626586e-03	ci left: 6.712907e-01	ci right 6.777966e-01	k: 53964	n:80000
PRCC   80000 perm   18 sec   (4438 perm/sec)   p_kst 6.745500e-01   p_cons 1.683750e-02   p_joint 1.587250e-01

Joint ci ratio: 3.276734e-02	ci left: 1.349473e-01	ci right 1.394539e-01	k: 12347	n:90000
Cons ci ratio: 9.959275e-02	ci left: 1.607877e-02	ci right 1.777479e-02	k: 1522	n:90000
KS ci ratio: 9.068578e-03	ci left: 6.718397e-01	ci right 6.779712e-01	k: 60742	n:90000
PRCC   90000 perm   21 sec   (4350 perm/sec)   p_kst 6.749111e-01   p_cons 1.691111e-02   p_joint 1.371889e-01

Outputting figure to mutsig2_images.part000000000137/PRCC.3_1504_90000_0.67491_0.016911_0.13719.png
                gene_name: PRCC
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 70 percent done.
PRDM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
KS ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
PRDM7   10000 perm   2 sec   (5993 perm/sec)   p_kst 5.763000e-01   p_cons 6.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM7.3_1519_10000_0.5763_0.6769_1.png
                gene_name: PRDM7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PRDX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
Cons ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
PRDX6   10000 perm   2 sec   (6624 perm/sec)   p_kst 7.943000e-01   p_cons 5.750000e-02   p_joint 4.132000e-01

Joint ci ratio: 3.917209e-02	ci left: 3.270651e-01	ci right 3.401833e-01	k: 6672	n:20000
Cons ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
KS ci ratio: 1.388769e-02	ci left: 7.937313e-01	ci right 8.048815e-01	k: 15987	n:20000
PRDX6   20000 perm   3 sec   (5810 perm/sec)   p_kst 7.993500e-01   p_cons 5.485000e-02   p_joint 3.336000e-01

Joint ci ratio: 3.894706e-02	ci left: 2.474920e-01	ci right 2.573560e-01	k: 7572	n:30000
Cons ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
KS ci ratio: 1.138923e-02	ci left: 7.933441e-01	ci right 8.024648e-01	k: 23938	n:30000
PRDX6   30000 perm   5 sec   (5494 perm/sec)   p_kst 7.979333e-01   p_cons 5.553333e-02   p_joint 2.524000e-01

Outputting figure to mutsig2_images.part000000000137/PRDX6.3_695_30000_0.79793_0.055533_0.2524.png
                gene_name: PRDX6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 74 percent done.
PRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
Cons ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
KS ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
PRG3   10000 perm   2 sec   (6625 perm/sec)   p_kst 3.906000e-01   p_cons 9.905000e-01   p_joint 5.278000e-01

Outputting figure to mutsig2_images.part000000000137/PRG3.3_698_10000_0.3906_0.9905_0.5278.png
                gene_name: PRG3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 75 percent done.
PRH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
Cons ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
KS ci ratio: 4.018633e-02	ci left: 4.776581e-01	ci right 4.973492e-01	k: 4875	n:10000
PRH1   10000 perm   1 sec   (6803 perm/sec)   p_kst 4.875000e-01   p_cons 5.450000e-02   p_joint 2.047000e-01

Joint ci ratio: 3.608044e-02	ci left: 3.643988e-01	ci right 3.778386e-01	k: 7422	n:20000
Cons ci ratio: 9.999791e-02	ci left: 6.777123e-02	ci right 7.495399e-02	k: 1426	n:20000
KS ci ratio: 2.810163e-02	ci left: 4.861476e-01	ci right 5.000544e-01	k: 9862	n:20000
PRH1   20000 perm   3 sec   (5827 perm/sec)   p_kst 4.931000e-01   p_cons 7.130000e-02   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000137/PRH1.3_517_20000_0.4931_0.0713_0.3711.png
                gene_name: PRH1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 77 percent done.
PRIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
Cons ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
KS ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
PRIM1   10000 perm   2 sec   (5957 perm/sec)   p_kst 7.837000e-01   p_cons 1.026000e-01   p_joint 4.475000e-01

Joint ci ratio: 2.845522e-02	ci left: 4.799002e-01	ci right 4.938036e-01	k: 9737	n:20000
Cons ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
KS ci ratio: 1.477890e-02	ci left: 7.728311e-01	ci right 7.843878e-01	k: 15573	n:20000
PRIM1   20000 perm   4 sec   (5385 perm/sec)   p_kst 7.786500e-01   p_cons 1.093000e-01   p_joint 4.868500e-01

Outputting figure to mutsig2_images.part000000000137/PRIM1.3_1315_20000_0.77865_0.1093_0.48685.png
                gene_name: PRIM1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 79 percent done.
PRKAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
KS ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
PRKAB1   10000 perm   2 sec   (6500 perm/sec)   p_kst 1.728000e-01   p_cons 4.980000e-02   p_joint 1.393000e-01

Joint ci ratio: 8.380750e-02	ci left: 9.445279e-02	ci right 1.027643e-01	k: 1971	n:20000
Cons ci ratio: 1.210749e-01	ci left: 4.677729e-02	ci right 5.285444e-02	k: 995	n:20000
KS ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
PRKAB1   20000 perm   3 sec   (5737 perm/sec)   p_kst 1.733000e-01   p_cons 4.975000e-02   p_joint 9.855000e-02

Joint ci ratio: 6.817359e-02	ci left: 9.587243e-02	ci right 1.026721e-01	k: 2977	n:30000
Cons ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
KS ci ratio: 4.949395e-02	ci left: 1.686359e-01	ci right 1.772275e-01	k: 5187	n:30000
PRKAB1   30000 perm   6 sec   (5393 perm/sec)   p_kst 1.729000e-01   p_cons 5.096667e-02   p_joint 9.923333e-02

Outputting figure to mutsig2_images.part000000000137/PRKAB1.3_841_30000_0.1729_0.050967_0.099233.png
                gene_name: PRKAB1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 80 percent done.
PRKACB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
PRKACB   10000 perm   2 sec   (6593 perm/sec)   p_kst 4.802000e-01   p_cons 2.157000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKACB.3_1300_10000_0.4802_0.2157_1.png
                gene_name: PRKACB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PRKCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
Cons ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
KS ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
PRKCE   10000 perm   2 sec   (5573 perm/sec)   p_kst 4.216000e-01   p_cons 1.039000e-01   p_joint 4.610000e-01

Joint ci ratio: 3.144952e-02	ci left: 4.302600e-01	ci right 4.440583e-01	k: 8743	n:20000
Cons ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
KS ci ratio: 3.239703e-02	ci left: 4.157407e-01	ci right 4.294818e-01	k: 8452	n:20000
PRKCE   20000 perm   4 sec   (4902 perm/sec)   p_kst 4.226000e-01   p_cons 1.057500e-01   p_joint 4.371500e-01

Outputting figure to mutsig2_images.part000000000137/PRKCE.3_2274_20000_0.4226_0.10575_0.43715.png
                gene_name: PRKCE
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 84 percent done.
PRKG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KS ci ratio: 2.465067e-02	ci left: 7.076552e-01	ci right 7.254185e-01	k: 7166	n:10000
PRKG1   10000 perm   2 sec   (5685 perm/sec)   p_kst 7.166000e-01   p_cons 4.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKG1.3_2403_10000_0.7166_0.4213_1.png
                gene_name: PRKG1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PRKX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
Cons ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
PRKX   10000 perm   2 sec   (6633 perm/sec)   p_kst 6.210000e-02   p_cons 7.630000e-02   p_joint 2.710000e-02

Joint ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
Cons ci ratio: 9.657888e-02	ci left: 7.241309e-02	ci right 7.981071e-02	k: 1521	n:20000
KS ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
PRKX   20000 perm   3 sec   (5792 perm/sec)   p_kst 5.875000e-02   p_cons 7.605000e-02   p_joint 4.790000e-02

Joint ci ratio: 9.793022e-02	ci left: 4.821186e-02	ci right 5.320894e-02	k: 1520	n:30000
Cons ci ratio: 8.127097e-02	ci left: 6.903446e-02	ci right 7.491542e-02	k: 2158	n:30000
KS ci ratio: 9.019386e-02	ci left: 5.655559e-02	ci right 6.193016e-02	k: 1776	n:30000
PRKX   30000 perm   6 sec   (5366 perm/sec)   p_kst 5.920000e-02   p_cons 7.193333e-02   p_joint 5.066667e-02

Outputting figure to mutsig2_images.part000000000137/PRKX.3_1109_30000_0.0592_0.071933_0.050667.png
                gene_name: PRKX
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 87 percent done.
PRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
Cons ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
PRB2   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.159000e-01   p_cons 6.880000e-02   p_joint 6.250000e-02

Joint ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
Cons ci ratio: 1.033518e-01	ci left: 6.362186e-02	ci right 7.060464e-02	k: 1341	n:20000
KS ci ratio: 5.234434e-02	ci left: 2.132350e-01	ci right 2.247468e-01	k: 4379	n:20000
PRB2   20000 perm   3 sec   (5789 perm/sec)   p_kst 2.189500e-01   p_cons 6.705000e-02   p_joint 7.530000e-02

Joint ci ratio: 6.166755e-02	ci left: 1.150275e-01	ci right 1.223798e-01	k: 3560	n:30000
Cons ci ratio: 8.414083e-02	ci left: 6.462097e-02	ci right 7.032981e-02	k: 2023	n:30000
KS ci ratio: 4.303701e-02	ci left: 2.119496e-01	ci right 2.213053e-01	k: 6498	n:30000
PRB2   30000 perm   5 sec   (5481 perm/sec)   p_kst 2.166000e-01   p_cons 6.743333e-02   p_joint 1.186667e-01

Outputting figure to mutsig2_images.part000000000137/PRB2.2_1263_30000_0.2166_0.067433_0.11867.png
                gene_name: PRB2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 89 percent done.
PRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
PRC1   10000 perm   2 sec   (6266 perm/sec)   p_kst 7.142000e-01   p_cons 1.763000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRC1.2_1923_10000_0.7142_0.1763_1.png
                gene_name: PRC1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PRDX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
PRDX1   10000 perm   1 sec   (7578 perm/sec)   p_kst 1.635000e-01   p_cons 6.128000e-01   p_joint 8.312000e-01

Outputting figure to mutsig2_images.part000000000137/PRDX1.2_620_10000_0.1635_0.6128_0.8312.png
                gene_name: PRDX1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
PRDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
Cons ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
PRDX4   10000 perm   1 sec   (7036 perm/sec)   p_kst 5.308000e-01   p_cons 3.054000e-01   p_joint 5.494000e-01

Outputting figure to mutsig2_images.part000000000137/PRDX4.2_844_10000_0.5308_0.3054_0.5494.png
                gene_name: PRDX4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 93 percent done.
PRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
Cons ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
KS ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
PRG2   10000 perm   1 sec   (7615 perm/sec)   p_kst 8.412000e-01   p_cons 2.351000e-01   p_joint 4.053000e-01

Outputting figure to mutsig2_images.part000000000137/PRG2.2_689_10000_0.8412_0.2351_0.4053.png
                gene_name: PRG2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 95 percent done.
PRICKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
KS ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
PRICKLE2   10000 perm   2 sec   (5840 perm/sec)   p_kst 5.338000e-01   p_cons 6.260000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
KS ci ratio: 2.566646e-02	ci left: 5.314107e-01	ci right 5.452781e-01	k: 10767	n:20000
PRICKLE2   20000 perm   4 sec   (5193 perm/sec)   p_kst 5.383500e-01   p_cons 6.330000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.671902e-02	ci left: 6.099481e-02	ci right 6.655671e-02	k: 1912	n:30000
KS ci ratio: 2.094229e-02	ci left: 5.330389e-01	ci right 5.443536e-01	k: 16161	n:30000
PRICKLE2   30000 perm   6 sec   (4946 perm/sec)   p_kst 5.387000e-01   p_cons 6.373333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRICKLE2.2_2563_30000_0.5387_0.063733_1.png
                gene_name: PRICKLE2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PRKCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
PRKCH   10000 perm   2 sec   (6094 perm/sec)   p_kst 5.714000e-01   p_cons 8.260000e-02   p_joint 1

Joint ci ratio: 1.531165e-02	ci left: 7.602708e-01	ci right 7.720518e-01	k: 15324	n:20000
Cons ci ratio: 9.120586e-02	ci left: 8.068090e-02	ci right 8.844038e-02	k: 1690	n:20000
KS ci ratio: 2.418429e-02	ci left: 5.608500e-01	ci right 5.746303e-01	k: 11355	n:20000
PRKCH   20000 perm   4 sec   (5408 perm/sec)   p_kst 5.677500e-01   p_cons 8.450000e-02   p_joint 7.662000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCH.2_2108_20000_0.56775_0.0845_0.7662.png
                gene_name: PRKCH
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 98 percent done.
PRKCZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
Cons ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
PRKCZ   10000 perm   2 sec   (6223 perm/sec)   p_kst 7.539000e-01   p_cons 2.908000e-01   p_joint 8.748000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCZ.2_1851_10000_0.7539_0.2908_0.8748.png
                gene_name: PRKCZ
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000137
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 137 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4422336: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000138> was used as the working directory.
Started at Wed Oct 24 18:04:20 2012
Results reported at Wed Oct 24 18:27:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000138.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000138.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 138  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000138.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    921.09 sec.
    Max Memory :      5316 MB
    Max Swap   :      7589 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
138
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 138
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 138: processing genes 12395 - 12485
Calculating significance of each gene.
Using projection method.
12395	PRLHR	7.524311e-02
12396	PRLR	3.697766e-01
12397	PRM1	1
12398	PRM2	8.813156e-02
12399	PRM3	1
12400	PRMT1	1
12401	PRMT10	1
12402	PRMT2	8.158917e-01
12403	PRMT3	9.516022e-01
12404	PRMT5	9.237801e-01
12405	PRMT6	1.602844e-01
12406	PRMT7	4.039029e-01
12407	PRMT8	5.419164e-03
12408	PRND	1
12409	PRNP	2.182741e-01
12410	PROC	5.446811e-01
12411	PROCA1	3.505542e-01
12412	PROCR	5.305224e-01
12413	PRODH	1
12414	PRODH2	9.079817e-01
12415	PROK1	5.212754e-01
12416	PROK2	3.863346e-02
12417	PROKR1	1
12418	PROKR2	1
12419	PROL1	8.223058e-03
12420	PROM1	7.249731e-01
12421	PROM2	8.936745e-01
12422	PROP1	1.302395e-02
12423	PROS1	3.691006e-03
12424	PROSC	3.878202e-01
12425	PROX1	9.569054e-01
12426	PROX2	9.686182e-01
12427	PROZ	1
12428	PRPF18	3.851601e-01
12429	PRPF19	6.353975e-01
12430	PRPF3	9.367268e-01
12431	PRPF31	1
12432	PRPF38A	6.723279e-01
12433	PRPF38B	1.638634e-01
12434	PRPF39	5.625440e-01
12435	PRPF4	5.797697e-01
12436	PRPF40A	7.745155e-01
12437	PRPF40B	8.662384e-01
12438	PRPF4B	7.701914e-01
12439	PRPF6	6.509708e-01
12440	PRPF8	9.999264e-01
12441	PRPH	1
12442	PRPH2	8.058287e-01
12443	PRPS1	3.291367e-01
12444	PRPS1L1	1.084758e-01
12445	PRPS2	1
12446	PRPSAP1	8.289037e-01
12447	PRPSAP2	1
12448	PRR11	4.964885e-01
12449	PRR12	9.980892e-01
12450	PRR13	1
12451	PRR14	8.528269e-01
12452	PRR15	2.724882e-01
12453	PRR15L	1
12454	PRR16	1
12455	PRR18	1
12456	PRR19	4.899626e-01
12457	PRR21	7.176092e-05
12458	PRR22	1
12459	PRR23A	5.336340e-01
12460	PRR23B	1
12461	PRR23C	1
12462	PRR25	7.820560e-01
12463	PRR3	1
12464	PRR4	5.014509e-01
12465	PRR5	7.657841e-01
12466	PRR5-ARHGAP8	9.073857e-01
12467	PRR5L	5.286644e-01
12468	PRR7	1
12469	PRRC1	2.466996e-01
12470	PRRG1	6.876164e-01
12471	PRRG2	1
12472	PRRG3	8.952939e-02
12473	PRRG4	1
12474	PRRT1	1
12475	PRRT2	1
12476	PRRT3	1
12477	PRRX1	2.486896e-01
12478	PRRX2	1
12479	PRSS1	1
12480	PRSS12	9.747319e-01
12481	PRSS16	3.657741e-01
12482	PRSS2	1
12483	PRSS21	4.172776e-01
12484	PRSS22	6.299391e-01
12485	PRSS23	6.761455e-01
Done

Running MutSig 2:
Scatter job 138: processing genes 12395 - 12485
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
PROS1   10000 perm   2 sec   (4057 perm/sec)   p_kst 6.250000e-02   p_cons 1.024000e-01   p_joint 4.670000e-02

Joint ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
Cons ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
KS ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
PROS1   20000 perm   8 sec   (2463 perm/sec)   p_kst 5.760000e-02   p_cons 1.028500e-01   p_joint 5.765000e-02

Joint ci ratio: 1.207561e-01	ci left: 3.188072e-02	ci right 3.601018e-02	k: 1017	n:30000
Cons ci ratio: 6.646459e-02	ci left: 1.004361e-01	ci right 1.073741e-01	k: 3116	n:30000
KS ci ratio: 9.115190e-02	ci left: 5.541384e-02	ci right 6.073881e-02	k: 1741	n:30000
PROS1   30000 perm   11 sec   (2795 perm/sec)   p_kst 5.803333e-02   p_cons 1.038667e-01   p_joint 3.390000e-02

Joint ci ratio: 7.234747e-02	ci left: 6.589596e-02	ci right 7.086692e-02	k: 2734	n:40000
Cons ci ratio: 5.455300e-02	ci left: 1.111975e-01	ci right 1.174586e-01	k: 4572	n:40000
KS ci ratio: 7.738969e-02	ci left: 5.793762e-02	ci right 6.262646e-02	k: 2410	n:40000
PROS1   40000 perm   13 sec   (2994 perm/sec)   p_kst 6.025000e-02   p_cons 1.143000e-01   p_joint 6.835000e-02

Outputting figure to mutsig2_images.part000000000138/PROS1.13_2091_40000_0.06025_0.1143_0.06835.png
                gene_name: PROS1
               theta_stop: 0.077 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 2 percent done.
PRSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
Cons ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
PRSS1   10000 perm   2 sec   (6487 perm/sec)   p_kst 3.080000e-01   p_cons 3.668000e-01   p_joint 3.139000e-01

Outputting figure to mutsig2_images.part000000000138/PRSS1.12_764_10000_0.308_0.3668_0.3139.png
                gene_name: PRSS1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 4 percent done.
PRLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
PRLR   10000 perm   2 sec   (5595 perm/sec)   p_kst 3.716000e-01   p_cons 9.031000e-01   p_joint 6.284000e-01

Outputting figure to mutsig2_images.part000000000138/PRLR.9_1901_10000_0.3716_0.9031_0.6284.png
                gene_name: PRLR
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 6 percent done.
PRMT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.356693e-02	ci left: 4.375213e-01	ci right 4.571094e-01	k: 4473	n:10000
Cons ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
KS ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
PRMT8   10000 perm   2 sec   (6036 perm/sec)   p_kst 6.595000e-01   p_cons 1.678000e-01   p_joint 4.473000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT8.8_1225_10000_0.6595_0.1678_0.4473.png
                gene_name: PRMT8
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 8 percent done.
PRR21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
Cons ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
KS ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
PRR21   10000 perm   2 sec   (5528 perm/sec)   p_kst 8.240000e-02   p_cons 9.143000e-01   p_joint 1.816000e-01

Joint ci ratio: 6.422856e-02	ci left: 1.519339e-01	ci right 1.620661e-01	k: 3139	n:20000
Cons ci ratio: 8.723939e-03	ci left: 9.058470e-01	ci right 9.138334e-01	k: 18198	n:20000
KS ci ratio: 9.441389e-02	ci left: 7.559155e-02	ci right 8.313128e-02	k: 1586	n:20000
PRR21   20000 perm   4 sec   (4993 perm/sec)   p_kst 7.930000e-02   p_cons 9.099000e-01   p_joint 1.569500e-01

Outputting figure to mutsig2_images.part000000000138/PRR21.8_1173_20000_0.0793_0.9099_0.15695.png
                gene_name: PRR21
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
PRMT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
PRMT7   10000 perm   1 sec   (6667 perm/sec)   p_kst 6.355000e-01   p_cons 2.106000e-01   p_joint 6.370000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT7.6_2147_10000_0.6355_0.2106_0.637.png
                gene_name: PRMT7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 12 percent done.
PROL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
PROL1   10000 perm   1 sec   (7077 perm/sec)   p_kst 5.048000e-01   p_cons 9.350000e-02   p_joint 1.845000e-01

Joint ci ratio: 5.333561e-02	ci left: 2.069467e-01	ci right 2.183370e-01	k: 4252	n:20000
Cons ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
KS ci ratio: 2.745172e-02	ci left: 4.978455e-01	ci right 5.117531e-01	k: 10096	n:20000
PROL1   20000 perm   3 sec   (6279 perm/sec)   p_kst 5.048000e-01   p_cons 9.180000e-02   p_joint 2.126000e-01

Outputting figure to mutsig2_images.part000000000138/PROL1.6_755_20000_0.5048_0.0918_0.2126.png
                gene_name: PROL1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 13 percent done.
PRPF38B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
Cons ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
KS ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
PRPF38B   10000 perm   1 sec   (6908 perm/sec)   p_kst 2.248000e-01   p_cons 5.657000e-01   p_joint 5.244000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF38B.6_1665_10000_0.2248_0.5657_0.5244.png
                gene_name: PRPF38B
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 15 percent done.
PRPF40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
Cons ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
KS ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
PRPF40B   10000 perm   2 sec   (5601 perm/sec)   p_kst 6.260000e-01   p_cons 9.879000e-01   p_joint 7.271000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40B.6_2716_10000_0.626_0.9879_0.7271.png
                gene_name: PRPF40B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 17 percent done.
PRPF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
Cons ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
PRPF4B   10000 perm   2 sec   (5921 perm/sec)   p_kst 5.559000e-01   p_cons 2.090000e-01   p_joint 3.462000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4B.6_3084_10000_0.5559_0.209_0.3462.png
                gene_name: PRPF4B
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 19 percent done.
PRPF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
Cons ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
KS ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
PRPF6   10000 perm   2 sec   (6410 perm/sec)   p_kst 4.874000e-01   p_cons 2.774000e-01   p_joint 5.193000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF6.6_2910_10000_0.4874_0.2774_0.5193.png
                gene_name: PRPF6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 21 percent done.
PRPF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.993534e-02	ci left: 6.220585e-01	ci right 6.410648e-01	k: 6316	n:10000
Cons ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
KS ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
PRPF8   10000 perm   2 sec   (4778 perm/sec)   p_kst 3.541000e-01   p_cons 5.924000e-01   p_joint 6.316000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF8.6_7176_10000_0.3541_0.5924_0.6316.png
                gene_name: PRPF8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 23 percent done.
PRLHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
Cons ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
PRLHR   10000 perm   2 sec   (6002 perm/sec)   p_kst 3.932000e-01   p_cons 6.081000e-01   p_joint 5.780000e-01

Outputting figure to mutsig2_images.part000000000138/PRLHR.5_1117_10000_0.3932_0.6081_0.578.png
                gene_name: PRLHR
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 25 percent done.
PROM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
Cons ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
KS ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
PROM2   10000 perm   2 sec   (5689 perm/sec)   p_kst 7.875000e-01   p_cons 5.889000e-01   p_joint 7.978000e-01

Outputting figure to mutsig2_images.part000000000138/PROM2.5_2597_10000_0.7875_0.5889_0.7978.png
                gene_name: PROM2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 27 percent done.
PROP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
PROP1   10000 perm   2 sec   (5468 perm/sec)   p_kst 6.377000e-01   p_cons 3.661000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000138/PROP1.5_693_10000_0.6377_0.3661_0.6024.png
                gene_name: PROP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 29 percent done.
PRMT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
Cons ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
KS ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
PRMT6   10000 perm   2 sec   (6017 perm/sec)   p_kst 3.230000e-01   p_cons 4.534000e-01   p_joint 4.567000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT6.4_1132_10000_0.323_0.4534_0.4567.png
                gene_name: PRMT6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 31 percent done.
PROKR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
Cons ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
KS ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
PROKR2   10000 perm   2 sec   (5989 perm/sec)   p_kst 2.894000e-01   p_cons 2.200000e-01   p_joint 3.650000e-01

Outputting figure to mutsig2_images.part000000000138/PROKR2.4_1162_10000_0.2894_0.22_0.365.png
                gene_name: PROKR2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 33 percent done.
PROM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
Cons ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
KS ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
PROM1   10000 perm   2 sec   (5622 perm/sec)   p_kst 7.850000e-02   p_cons 6.083000e-01   p_joint 2.021000e-01

Joint ci ratio: 5.371275e-02	ci left: 2.046201e-01	ci right 2.159643e-01	k: 4205	n:20000
Cons ci ratio: 2.079703e-02	ci left: 6.331019e-01	ci right 6.464574e-01	k: 12796	n:20000
KS ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
PROM1   20000 perm   7 sec   (2816 perm/sec)   p_kst 7.780000e-02   p_cons 6.398000e-01   p_joint 2.102500e-01

Outputting figure to mutsig2_images.part000000000138/PROM1.4_2702_20000_0.0778_0.6398_0.21025.png
                gene_name: PROM1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 35 percent done.
PROX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
Cons ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
KS ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
PROX1   10000 perm   2 sec   (4938 perm/sec)   p_kst 1.770000e-02   p_cons 3.142000e-01   p_joint 5.650000e-02

Joint ci ratio: 1.216545e-01	ci left: 4.634031e-02	ci right 5.239157e-02	k: 986	n:20000
Cons ci ratio: 4.095112e-02	ci left: 3.077194e-01	ci right 3.206347e-01	k: 6283	n:20000
KS ci ratio: 2.041526e-01	ci left: 1.625023e-02	ci right 1.999174e-02	k: 361	n:20000
PROX1   20000 perm   8 sec   (2414 perm/sec)   p_kst 1.805000e-02   p_cons 3.141500e-01   p_joint 4.930000e-02

Joint ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
Cons ci ratio: 3.331017e-02	ci left: 3.105414e-01	ci right 3.210943e-01	k: 9474	n:30000
KS ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
PROX1   30000 perm   15 sec   (1996 perm/sec)   p_kst 1.656667e-02   p_cons 3.158000e-01   p_joint 6.520000e-02

Joint ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
Cons ci ratio: 2.882967e-02	ci left: 3.115196e-01	ci right 3.206571e-01	k: 12643	n:40000
KS ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
PROX1   40000 perm   22 sec   (1799 perm/sec)   p_kst 1.612500e-02   p_cons 3.160750e-01   p_joint 4.110000e-02

Joint ci ratio: 8.382924e-02	ci left: 4.014084e-02	ci right 4.367260e-02	k: 2094	n:50000
Cons ci ratio: 2.576936e-02	ci left: 3.122844e-01	ci right 3.204569e-01	k: 15818	n:50000
KS ci ratio: 1.389868e-01	ci left: 1.457062e-02	ci right 1.676614e-02	k: 782	n:50000
PROX1   50000 perm   29 sec   (1718 perm/sec)   p_kst 1.564000e-02   p_cons 3.163600e-01   p_joint 4.188000e-02

Joint ci ratio: 8.487166e-02	ci left: 3.287429e-02	ci right 3.580431e-02	k: 2059	n:60000
Cons ci ratio: 2.354387e-02	ci left: 3.122806e-01	ci right 3.197372e-01	k: 18960	n:60000
KS ci ratio: 1.276803e-01	ci left: 1.447830e-02	ci right 1.646897e-02	k: 927	n:60000
PROX1   60000 perm   33 sec   (1816 perm/sec)   p_kst 1.545000e-02   p_cons 3.160000e-01   p_joint 3.431667e-02

Joint ci ratio: 9.231038e-02	ci left: 2.395375e-02	ci right 2.628584e-02	k: 1757	n:70000
Cons ci ratio: 2.181698e-02	ci left: 3.121719e-01	ci right 3.190719e-01	k: 22093	n:70000
KS ci ratio: 1.184687e-01	ci left: 1.448692e-02	ci right 1.632500e-02	k: 1077	n:70000
PROX1   70000 perm   40 sec   (1756 perm/sec)   p_kst 1.538571e-02   p_cons 3.156143e-01   p_joint 2.510000e-02

Joint ci ratio: 8.761238e-02	ci left: 2.334189e-02	ci right 2.549279e-02	k: 1952	n:80000
Cons ci ratio: 2.040749e-02	ci left: 3.124049e-01	ci right 3.188585e-01	k: 25250	n:80000
KS ci ratio: 1.103634e-01	ci left: 1.466751e-02	ci right 1.639289e-02	k: 1241	n:80000
PROX1   80000 perm   48 sec   (1683 perm/sec)   p_kst 1.551250e-02   p_cons 3.156250e-01   p_joint 2.440000e-02

Joint ci ratio: 9.715538e-02	ci left: 1.690278e-02	ci right 1.863961e-02	k: 1598	n:90000
Cons ci ratio: 1.923957e-02	ci left: 3.126084e-01	ci right 3.186924e-01	k: 28408	n:90000
KS ci ratio: 1.036848e-01	ci left: 1.482213e-02	ci right 1.645375e-02	k: 1406	n:90000
PROX1   90000 perm   59 sec   (1526 perm/sec)   p_kst 1.562222e-02   p_cons 3.156444e-01   p_joint 1.775556e-02

Joint ci ratio: 9.231974e-02	ci left: 1.689176e-02	ci right 1.853639e-02	k: 1770	n:100000
Cons ci ratio: 1.824489e-02	ci left: 3.129393e-01	ci right 3.187114e-01	k: 31582	n:100000
KS ci ratio: 9.796171e-02	ci left: 1.498738e-02	ci right 1.654089e-02	k: 1575	n:100000
PROX1   100000 perm   74 sec   (1354 perm/sec)   p_kst 1.575000e-02   p_cons 3.158200e-01   p_joint 1.770000e-02

Outputting figure to mutsig2_images.part000000000138/PROX1.4_2230_100000_0.01575_0.31582_0.0177.png
                gene_name: PROX1
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 37 percent done.
PRR14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
PRR14   10000 perm   2 sec   (4889 perm/sec)   p_kst 5.394000e-01   p_cons 1.550000e-02   p_joint 5.020000e-02

Joint ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
Cons ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
KS ci ratio: 2.555565e-02	ci left: 5.335628e-01	ci right 5.474254e-01	k: 10810	n:20000
PRR14   20000 perm   12 sec   (1621 perm/sec)   p_kst 5.405000e-01   p_cons 1.605000e-02   p_joint 6.810000e-02

Joint ci ratio: 9.387118e-02	ci left: 5.234895e-02	ci right 5.753766e-02	k: 1647	n:30000
Cons ci ratio: 1.908535e-01	ci left: 1.254223e-02	ci right 1.521980e-02	k: 415	n:30000
KS ci ratio: 2.090160e-02	ci left: 5.340063e-01	ci right 5.453194e-01	k: 16190	n:30000
PRR14   30000 perm   22 sec   (1341 perm/sec)   p_kst 5.396667e-01   p_cons 1.383333e-02   p_joint 5.490000e-02

Joint ci ratio: 1.042738e-01	ci left: 3.234286e-02	ci right 3.592519e-02	k: 1364	n:40000
Cons ci ratio: 1.677029e-01	ci left: 1.234407e-02	ci right 1.462737e-02	k: 538	n:40000
KS ci ratio: 1.811397e-02	ci left: 5.344251e-01	ci right 5.442192e-01	k: 21573	n:40000
PRR14   40000 perm   29 sec   (1373 perm/sec)   p_kst 5.393250e-01   p_cons 1.345000e-02   p_joint 3.410000e-02

Joint ci ratio: 7.764807e-02	ci left: 4.661368e-02	ci right 5.039896e-02	k: 2424	n:50000
Cons ci ratio: 1.522769e-01	ci left: 1.208322e-02	ci right 1.409390e-02	k: 653	n:50000
KS ci ratio: 1.663922e-02	ci left: 5.216719e-01	ci right 5.304450e-01	k: 26303	n:50000
PRR14   50000 perm   36 sec   (1398 perm/sec)   p_kst 5.260600e-01   p_cons 1.306000e-02   p_joint 4.848000e-02

Joint ci ratio: 7.287901e-02	ci left: 4.432108e-02	ci right 4.768967e-02	k: 2759	n:60000
Cons ci ratio: 1.410072e-01	ci left: 1.181932e-02	ci right 1.362827e-02	k: 762	n:60000
KS ci ratio: 1.518019e-02	ci left: 5.223619e-01	ci right 5.303688e-01	k: 31582	n:60000
PRR14   60000 perm   43 sec   (1406 perm/sec)   p_kst 5.263667e-01   p_cons 1.270000e-02   p_joint 4.598333e-02

Joint ci ratio: 7.030023e-02	ci left: 4.103151e-02	ci right 4.403514e-02	k: 2976	n:70000
Cons ci ratio: 1.303375e-01	ci left: 1.192506e-02	ci right 1.360140e-02	k: 892	n:70000
KS ci ratio: 1.401021e-02	ci left: 5.242221e-01	ci right 5.316327e-01	k: 36955	n:70000
PRR14   70000 perm   50 sec   (1393 perm/sec)   p_kst 5.279286e-01   p_cons 1.274286e-02   p_joint 4.251429e-02

Joint ci ratio: 6.472642e-02	ci left: 4.241680e-02	ci right 4.526640e-02	k: 3506	n:80000
Cons ci ratio: 1.208195e-01	ci left: 1.220226e-02	ci right 1.378335e-02	k: 1038	n:80000
KS ci ratio: 1.312554e-02	ci left: 5.236957e-01	ci right 5.306274e-01	k: 42173	n:80000
PRR14   80000 perm   58 sec   (1387 perm/sec)   p_kst 5.271625e-01   p_cons 1.297500e-02   p_joint 4.382500e-02

Joint ci ratio: 6.110877e-02	ci left: 4.238455e-02	ci right 4.506718e-02	k: 3934	n:90000
Cons ci ratio: 1.140520e-01	ci left: 1.221614e-02	ci right 1.370439e-02	k: 1165	n:90000
KS ci ratio: 1.236515e-02	ci left: 5.242875e-01	ci right 5.308218e-01	k: 47480	n:90000
PRR14   90000 perm   65 sec   (1387 perm/sec)   p_kst 5.275556e-01   p_cons 1.294444e-02   p_joint 4.371111e-02

Joint ci ratio: 5.872280e-02	ci left: 4.140588e-02	ci right 4.392073e-02	k: 4265	n:100000
Cons ci ratio: 1.077600e-01	ci left: 1.235575e-02	ci right 1.377270e-02	k: 1305	n:100000
KS ci ratio: 1.174041e-02	ci left: 5.240398e-01	ci right 5.302386e-01	k: 52714	n:100000
PRR14   100000 perm   70 sec   (1423 perm/sec)   p_kst 5.271400e-01   p_cons 1.305000e-02   p_joint 4.265000e-02

Joint ci ratio: 5.558051e-02	ci left: 4.205989e-02	ci right 4.447336e-02	k: 4758	n:110000
Cons ci ratio: 1.020848e-01	ci left: 1.255158e-02	ci right 1.391063e-02	k: 1454	n:110000
KS ci ratio: 1.119455e-02	ci left: 5.241625e-01	ci right 5.300724e-01	k: 57983	n:110000
PRR14   110000 perm   75 sec   (1467 perm/sec)   p_kst 5.271182e-01   p_cons 1.321818e-02   p_joint 4.325455e-02

Joint ci ratio: 5.419626e-02	ci left: 4.064169e-02	ci right 4.291386e-02	k: 5012	n:120000
Cons ci ratio: 9.768497e-02	ci left: 1.259440e-02	ci right 1.389594e-02	k: 1588	n:120000
KS ci ratio: 1.072643e-02	ci left: 5.238953e-01	ci right 5.295534e-01	k: 63207	n:120000
PRR14   120000 perm   81 sec   (1491 perm/sec)   p_kst 5.267250e-01   p_cons 1.323333e-02   p_joint 4.176667e-02

Outputting figure to mutsig2_images.part000000000138/PRR14.4_1802_120000_0.52672_0.013233_0.041767.png
                gene_name: PRR14
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 38 percent done.
PRR16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
Cons ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
KS ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
PRR16   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.818000e-01   p_cons 5.770000e-02   p_joint 1.471000e-01

Joint ci ratio: 6.936269e-02	ci left: 1.329030e-01	ci right 1.425026e-01	k: 2753	n:20000
Cons ci ratio: 1.121678e-01	ci left: 5.431319e-02	ci right 6.081619e-02	k: 1150	n:20000
KS ci ratio: 3.514823e-02	ci left: 3.766539e-01	ci right 3.901800e-01	k: 7668	n:20000
PRR16   20000 perm   9 sec   (2269 perm/sec)   p_kst 3.834000e-01   p_cons 5.750000e-02   p_joint 1.376500e-01

Joint ci ratio: 6.600472e-02	ci left: 1.017170e-01	ci right 1.086930e-01	k: 3155	n:30000
Cons ci ratio: 9.213864e-02	ci left: 5.427240e-02	ci right 5.954716e-02	k: 1706	n:30000
KS ci ratio: 2.871353e-02	ci left: 3.776602e-01	ci right 3.886957e-01	k: 11495	n:30000
PRR16   30000 perm   16 sec   (1899 perm/sec)   p_kst 3.831667e-01   p_cons 5.686667e-02   p_joint 1.051667e-01

Outputting figure to mutsig2_images.part000000000138/PRR16.4_854_30000_0.38317_0.056867_0.10517.png
                gene_name: PRR16
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
PRRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
PRRC1   10000 perm   2 sec   (5956 perm/sec)   p_kst 3.956000e-01   p_cons 9.112000e-01   p_joint 5.253000e-01

Outputting figure to mutsig2_images.part000000000138/PRRC1.4_1370_10000_0.3956_0.9112_0.5253.png
                gene_name: PRRC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
PRRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
Cons ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
PRRG3   10000 perm   2 sec   (5056 perm/sec)   p_kst 1.518000e-01   p_cons 9.710000e-01   p_joint 2.410000e-01

Outputting figure to mutsig2_images.part000000000138/PRRG3.4_708_10000_0.1518_0.971_0.241.png
                gene_name: PRRG3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
PRRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
PRRX1   10000 perm   2 sec   (6313 perm/sec)   p_kst 2.405000e-01   p_cons 3.500000e-03   p_joint 2.130000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 4.882997e-02	ci left: 2.377131e-01	ci right 2.496615e-01	k: 4873	n:20000
PRRX1   20000 perm   7 sec   (3033 perm/sec)   p_kst 2.436500e-01   p_cons 3.300000e-03   p_joint 2.115000e-02

Joint ci ratio: 1.498542e-01	ci left: 2.062674e-02	ci right 2.399999e-02	k: 668	n:30000
Cons ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
KS ci ratio: 3.991655e-02	ci left: 2.383868e-01	ci right 2.481296e-01	k: 7297	n:30000
PRRX1   30000 perm   13 sec   (2309 perm/sec)   p_kst 2.432333e-01   p_cons 3.166667e-03   p_joint 2.226667e-02

Joint ci ratio: 1.470722e-01	ci left: 1.616533e-02	ci right 1.875540e-02	k: 697	n:40000
Cons ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
KS ci ratio: 3.453753e-02	ci left: 2.393748e-01	ci right 2.478125e-01	k: 9743	n:40000
PRRX1   40000 perm   19 sec   (2056 perm/sec)   p_kst 2.435750e-01   p_cons 3.125000e-03   p_joint 1.742500e-02

Joint ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
Cons ci ratio: 4.128281e-01	ci left: 1.429723e-03	ci right 2.189994e-03	k: 89	n:50000
KS ci ratio: 3.093162e-02	ci left: 2.393451e-01	ci right 2.468847e-01	k: 12155	n:50000
PRRX1   50000 perm   24 sec   (2102 perm/sec)   p_kst 2.431000e-01   p_cons 1.780000e-03   p_joint 9.160000e-03

Joint ci ratio: 2.292346e-01	ci left: 4.294126e-03	ci right 5.421255e-03	k: 290	n:60000
Cons ci ratio: 3.700562e-01	ci left: 1.522126e-03	ci right 2.227456e-03	k: 111	n:60000
KS ci ratio: 2.821768e-02	ci left: 2.399207e-01	ci right 2.468042e-01	k: 14601	n:60000
PRRX1   60000 perm   32 sec   (1891 perm/sec)   p_kst 2.433500e-01   p_cons 1.850000e-03   p_joint 4.833333e-03

Joint ci ratio: 2.389916e-01	ci left: 3.371172e-03	ci right 4.299274e-03	k: 267	n:70000
Cons ci ratio: 3.489044e-01	ci left: 1.486625e-03	ci right 2.127234e-03	k: 125	n:70000
KS ci ratio: 2.614141e-02	ci left: 2.399401e-01	ci right 2.463098e-01	k: 17018	n:70000
PRRX1   70000 perm   42 sec   (1686 perm/sec)   p_kst 2.431143e-01   p_cons 1.785714e-03   p_joint 3.814286e-03

Joint ci ratio: 2.281972e-01	ci left: 3.255741e-03	ci right 4.105878e-03	k: 293	n:80000
Cons ci ratio: 3.230170e-01	ci left: 1.541191e-03	ci right 2.145853e-03	k: 146	n:80000
KS ci ratio: 2.444665e-02	ci left: 2.402427e-01	ci right 2.462009e-01	k: 19457	n:80000
PRRX1   80000 perm   51 sec   (1571 perm/sec)   p_kst 2.432125e-01   p_cons 1.825000e-03   p_joint 3.662500e-03

Joint ci ratio: 1.353533e-01	ci left: 8.608024e-03	ci right 9.868356e-03	k: 830	n:90000
Cons ci ratio: 3.096259e-01	ci left: 1.502925e-03	ci right 2.063304e-03	k: 159	n:90000
KS ci ratio: 2.306263e-02	ci left: 2.401896e-01	ci right 2.458047e-01	k: 21869	n:90000
PRRX1   90000 perm   55 sec   (1633 perm/sec)   p_kst 2.429889e-01   p_cons 1.766667e-03   p_joint 9.222222e-03

Joint ci ratio: 1.273902e-01	ci left: 8.782128e-03	ci right 9.986587e-03	k: 937	n:100000
Cons ci ratio: 2.969143e-01	ci left: 1.481982e-03	ci right 2.007595e-03	k: 173	n:100000
KS ci ratio: 2.186012e-02	ci left: 2.406531e-01	ci right 2.459818e-01	k: 24331	n:100000
PRRX1   100000 perm   58 sec   (1730 perm/sec)   p_kst 2.433100e-01   p_cons 1.730000e-03   p_joint 9.370000e-03

Joint ci ratio: 1.286964e-01	ci left: 7.825106e-03	ci right 8.910145e-03	k: 919	n:110000
Cons ci ratio: 2.879604e-01	ci left: 1.439918e-03	ci right 1.932408e-03	k: 184	n:110000
KS ci ratio: 2.075070e-02	ci left: 2.424062e-01	ci right 2.474981e-01	k: 26944	n:110000
PRRX1   110000 perm   61 sec   (1795 perm/sec)   p_kst 2.449455e-01   p_cons 1.672727e-03   p_joint 8.354545e-03

Joint ci ratio: 1.456502e-01	ci left: 5.562830e-03	ci right 6.444633e-03	k: 719	n:120000
Cons ci ratio: 2.728837e-01	ci left: 1.482631e-03	ci right 1.958635e-03	k: 205	n:120000
KS ci ratio: 1.987514e-02	ci left: 2.423693e-01	ci right 2.472430e-01	k: 29376	n:120000
PRRX1   120000 perm   65 sec   (1839 perm/sec)   p_kst 2.448000e-01   p_cons 1.708333e-03   p_joint 5.991667e-03

Joint ci ratio: 1.206577e-01	ci left: 7.567664e-03	ci right 8.546778e-03	k: 1046	n:130000
Cons ci ratio: 2.634625e-01	ci left: 1.476211e-03	ci right 1.931094e-03	k: 220	n:130000
KS ci ratio: 1.905858e-02	ci left: 2.431776e-01	ci right 2.478645e-01	k: 31917	n:130000
PRRX1   130000 perm   80 sec   (1629 perm/sec)   p_kst 2.455154e-01   p_cons 1.692308e-03   p_joint 8.046154e-03

Joint ci ratio: 1.064919e-01	ci left: 9.074972e-03	ci right 1.010264e-02	k: 1341	n:140000
Cons ci ratio: 2.560433e-01	ci left: 1.457578e-03	ci right 1.892051e-03	k: 233	n:140000
KS ci ratio: 1.836221e-02	ci left: 2.433256e-01	ci right 2.478421e-01	k: 34381	n:140000
PRRX1   140000 perm   93 sec   (1510 perm/sec)   p_kst 2.455786e-01   p_cons 1.664286e-03   p_joint 9.578571e-03

Joint ci ratio: 8.988785e-02	ci left: 1.195690e-02	ci right 1.308873e-02	k: 1877	n:150000
Cons ci ratio: 2.447900e-01	ci left: 1.497877e-03	ci right 1.921757e-03	k: 255	n:150000
KS ci ratio: 1.773602e-02	ci left: 2.434765e-01	ci right 2.478400e-01	k: 36848	n:150000
PRRX1   150000 perm   102 sec   (1470 perm/sec)   p_kst 2.456533e-01   p_cons 1.700000e-03   p_joint 1.251333e-02

Joint ci ratio: 8.303614e-02	ci left: 1.316673e-02	ci right 1.431349e-02	k: 2197	n:160000
Cons ci ratio: 2.388049e-01	ci left: 1.480586e-03	ci right 1.887813e-03	k: 268	n:160000
KS ci ratio: 1.715825e-02	ci left: 2.438600e-01	ci right 2.480867e-01	k: 39355	n:160000
PRRX1   160000 perm   109 sec   (1471 perm/sec)   p_kst 2.459688e-01   p_cons 1.675000e-03   p_joint 1.373125e-02

Joint ci ratio: 9.216367e-02	ci left: 1.004388e-02	ci right 1.101998e-02	k: 1789	n:170000
Cons ci ratio: 2.303915e-01	ci left: 1.504229e-03	ci right 1.901310e-03	k: 288	n:170000
KS ci ratio: 1.664535e-02	ci left: 2.439365e-01	ci right 2.480368e-01	k: 41817	n:170000
PRRX1   170000 perm   114 sec   (1496 perm/sec)   p_kst 2.459824e-01   p_cons 1.694118e-03   p_joint 1.052353e-02

Joint ci ratio: 8.080526e-02	ci left: 1.238378e-02	ci right 1.343200e-02	k: 2322	n:180000
Cons ci ratio: 2.220901e-01	ci left: 1.535961e-03	ci right 1.924813e-03	k: 310	n:180000
KS ci ratio: 1.617562e-02	ci left: 2.440117e-01	ci right 2.479965e-01	k: 44280	n:180000
PRRX1   180000 perm   119 sec   (1514 perm/sec)   p_kst 2.460000e-01   p_cons 1.722222e-03   p_joint 1.290000e-02

Joint ci ratio: 6.902910e-02	ci left: 1.611303e-02	ci right 1.727020e-02	k: 3170	n:190000
Cons ci ratio: 2.156009e-01	ci left: 1.549642e-03	ci right 1.928978e-03	k: 329	n:190000
KS ci ratio: 1.573974e-02	ci left: 2.441697e-01	ci right 2.480486e-01	k: 46760	n:190000
PRRX1   190000 perm   123 sec   (1544 perm/sec)   p_kst 2.461053e-01   p_cons 1.731579e-03   p_joint 1.668421e-02

Joint ci ratio: 6.774606e-02	ci left: 1.590689e-02	ci right 1.702719e-02	k: 3292	n:200000
Cons ci ratio: 2.087522e-01	ci left: 1.576318e-03	ci right 1.948361e-03	k: 351	n:200000
KS ci ratio: 1.534929e-02	ci left: 2.440239e-01	ci right 2.478034e-01	k: 49182	n:200000
PRRX1   200000 perm   126 sec   (1584 perm/sec)   p_kst 2.459100e-01   p_cons 1.755000e-03   p_joint 1.646000e-02

Joint ci ratio: 6.614890e-02	ci left: 1.590325e-02	ci right 1.699587e-02	k: 3453	n:210000
Cons ci ratio: 2.038872e-01	ci left: 1.578026e-03	ci right 1.940711e-03	k: 368	n:210000
KS ci ratio: 1.497479e-02	ci left: 2.441829e-01	ci right 2.478718e-01	k: 51665	n:210000
PRRX1   210000 perm   130 sec   (1611 perm/sec)   p_kst 2.460238e-01   p_cons 1.752381e-03   p_joint 1.644286e-02

Joint ci ratio: 6.410299e-02	ci left: 1.617758e-02	ci right 1.725339e-02	k: 3676	n:220000
Cons ci ratio: 1.993472e-01	ci left: 1.579670e-03	ci right 1.933665e-03	k: 385	n:220000
KS ci ratio: 1.462392e-02	ci left: 2.443919e-01	ci right 2.479966e-01	k: 54162	n:220000
PRRX1   220000 perm   137 sec   (1611 perm/sec)   p_kst 2.461909e-01   p_cons 1.750000e-03   p_joint 1.670909e-02

Joint ci ratio: 6.264540e-02	ci left: 1.621447e-02	ci right 1.726733e-02	k: 3849	n:230000
Cons ci ratio: 1.960747e-01	ci left: 1.564711e-03	ci right 1.908910e-03	k: 398	n:230000
KS ci ratio: 1.429995e-02	ci left: 2.444968e-01	ci right 2.480226e-01	k: 56639	n:230000
PRRX1   230000 perm   141 sec   (1626 perm/sec)   p_kst 2.462565e-01   p_cons 1.730435e-03   p_joint 1.673478e-02

Joint ci ratio: 6.161869e-02	ci left: 1.607208e-02	ci right 1.709798e-02	k: 3979	n:240000
Cons ci ratio: 1.931933e-01	ci left: 1.547077e-03	ci right 1.881808e-03	k: 410	n:240000
KS ci ratio: 1.400525e-02	ci left: 2.443652e-01	ci right 2.478159e-01	k: 59061	n:240000
PRRX1   240000 perm   145 sec   (1653 perm/sec)   p_kst 2.460875e-01   p_cons 1.708333e-03   p_joint 1.657917e-02

Joint ci ratio: 6.187687e-02	ci left: 1.531086e-02	ci right 1.629241e-02	k: 3949	n:250000
Cons ci ratio: 1.904352e-01	ci left: 1.530887e-03	ci right 1.856840e-03	k: 422	n:250000
KS ci ratio: 1.371208e-02	ci left: 2.446759e-01	ci right 2.480580e-01	k: 61591	n:250000
PRRX1   250000 perm   149 sec   (1681 perm/sec)   p_kst 2.463640e-01   p_cons 1.688000e-03   p_joint 1.579600e-02

Joint ci ratio: 6.466111e-02	ci left: 1.348755e-02	ci right 1.439257e-02	k: 3623	n:260000
Cons ci ratio: 1.873610e-01	ci left: 1.523306e-03	ci right 1.841813e-03	k: 436	n:260000
KS ci ratio: 1.343726e-02	ci left: 2.449441e-01	ci right 2.482615e-01	k: 64116	n:260000
PRRX1   260000 perm   152 sec   (1709 perm/sec)   p_kst 2.466000e-01   p_cons 1.676923e-03   p_joint 1.393462e-02

Joint ci ratio: 6.333630e-02	ci left: 1.354562e-02	ci right 1.443523e-02	k: 3776	n:270000
Cons ci ratio: 1.842266e-01	ci left: 1.519859e-03	ci right 1.831735e-03	k: 451	n:270000
KS ci ratio: 1.319753e-02	ci left: 2.446535e-01	ci right 2.479075e-01	k: 66495	n:270000
PRRX1   270000 perm   156 sec   (1732 perm/sec)   p_kst 2.462778e-01   p_cons 1.670370e-03   p_joint 1.398519e-02

Joint ci ratio: 6.742272e-02	ci left: 1.152621e-02	ci right 1.233394e-02	k: 3339	n:280000
Cons ci ratio: 1.814390e-01	ci left: 1.513290e-03	ci right 1.818602e-03	k: 465	n:280000
KS ci ratio: 1.294836e-02	ci left: 2.450079e-01	ci right 2.482045e-01	k: 69049	n:280000
PRRX1   280000 perm   160 sec   (1754 perm/sec)   p_kst 2.466036e-01   p_cons 1.660714e-03   p_joint 1.192500e-02

Joint ci ratio: 6.672295e-02	ci left: 1.136944e-02	ci right 1.215760e-02	k: 3410	n:290000
Cons ci ratio: 1.797143e-01	ci left: 1.490737e-03	ci right 1.788330e-03	k: 474	n:290000
KS ci ratio: 1.272517e-02	ci left: 2.449770e-01	ci right 2.481177e-01	k: 71498	n:290000
PRRX1   290000 perm   164 sec   (1773 perm/sec)   p_kst 2.465448e-01   p_cons 1.634483e-03   p_joint 1.175862e-02

Joint ci ratio: 6.455097e-02	ci left: 1.175118e-02	ci right 1.253829e-02	k: 3642	n:300000
Cons ci ratio: 1.756900e-01	ci left: 1.511119e-03	ci right 1.805308e-03	k: 496	n:300000
KS ci ratio: 1.251842e-02	ci left: 2.447923e-01	ci right 2.478793e-01	k: 73900	n:300000
PRRX1   300000 perm   167 sec   (1792 perm/sec)   p_kst 2.463333e-01   p_cons 1.653333e-03   p_joint 1.214000e-02

Joint ci ratio: 6.365925e-02	ci left: 1.169903e-02	ci right 1.247142e-02	k: 3745	n:310000
Cons ci ratio: 1.724244e-01	ci left: 1.520994e-03	ci right 1.811030e-03	k: 515	n:310000
KS ci ratio: 1.231949e-02	ci left: 2.446778e-01	ci right 2.477140e-01	k: 76320	n:310000
PRRX1   310000 perm   171 sec   (1810 perm/sec)   p_kst 2.461935e-01   p_cons 1.661290e-03   p_joint 1.208065e-02

Joint ci ratio: 6.247572e-02	ci left: 1.177328e-02	ci right 1.253560e-02	k: 3888	n:320000
Cons ci ratio: 1.694931e-01	ci left: 1.527307e-03	ci right 1.813089e-03	k: 533	n:320000
KS ci ratio: 1.212353e-02	ci left: 2.447612e-01	ci right 2.477497e-01	k: 78801	n:320000
PRRX1   320000 perm   175 sec   (1827 perm/sec)   p_kst 2.462531e-01   p_cons 1.665625e-03   p_joint 1.215000e-02

Joint ci ratio: 6.278207e-02	ci left: 1.130904e-02	ci right 1.204502e-02	k: 3852	n:330000
Cons ci ratio: 1.668579e-01	ci left: 1.530372e-03	ci right 1.811828e-03	k: 550	n:330000
KS ci ratio: 1.193897e-02	ci left: 2.447672e-01	ci right 2.477100e-01	k: 81258	n:330000
PRRX1   330000 perm   179 sec   (1843 perm/sec)   p_kst 2.462364e-01   p_cons 1.666667e-03   p_joint 1.167273e-02

Joint ci ratio: 6.353089e-02	ci left: 1.072159e-02	ci right 1.142796e-02	k: 3764	n:340000
Cons ci ratio: 1.641971e-01	ci left: 1.536110e-03	ci right 1.813671e-03	k: 568	n:340000
KS ci ratio: 1.176305e-02	ci left: 2.447585e-01	ci right 2.476576e-01	k: 83710	n:340000
PRRX1   340000 perm   183 sec   (1857 perm/sec)   p_kst 2.462059e-01   p_cons 1.670588e-03   p_joint 1.107059e-02

Joint ci ratio: 6.300197e-02	ci left: 1.059520e-02	ci right 1.128722e-02	k: 3828	n:350000
Cons ci ratio: 1.617979e-01	ci left: 1.538811e-03	ci right 1.812402e-03	k: 585	n:350000
KS ci ratio: 1.159237e-02	ci left: 2.448248e-01	ci right 2.476823e-01	k: 86188	n:350000
PRRX1   350000 perm   187 sec   (1870 perm/sec)   p_kst 2.462514e-01   p_cons 1.671429e-03   p_joint 1.093714e-02

Joint ci ratio: 6.251029e-02	ci left: 1.046765e-02	ci right 1.114581e-02	k: 3889	n:360000
Cons ci ratio: 1.597664e-01	ci left: 1.536056e-03	ci right 1.805400e-03	k: 600	n:360000
KS ci ratio: 1.143251e-02	ci left: 2.447712e-01	ci right 2.475884e-01	k: 88624	n:360000
PRRX1   360000 perm   191 sec   (1882 perm/sec)   p_kst 2.461778e-01   p_cons 1.666667e-03   p_joint 1.080278e-02

Joint ci ratio: 6.421778e-02	ci left: 9.649972e-03	ci right 1.029287e-02	k: 3688	n:370000
Cons ci ratio: 1.567930e-01	ci left: 1.554243e-03	ci right 1.821226e-03	k: 623	n:370000
KS ci ratio: 1.127316e-02	ci left: 2.449151e-01	ci right 2.476943e-01	k: 91132	n:370000
PRRX1   370000 perm   196 sec   (1892 perm/sec)   p_kst 2.463027e-01   p_cons 1.683784e-03   p_joint 9.967568e-03

Joint ci ratio: 6.338156e-02	ci left: 9.649806e-03	ci right 1.028402e-02	k: 3786	n:380000
Cons ci ratio: 1.551856e-01	ci left: 1.546216e-03	ci right 1.808845e-03	k: 636	n:380000
KS ci ratio: 1.112724e-02	ci left: 2.448204e-01	ci right 2.475624e-01	k: 93552	n:380000
PRRX1   380000 perm   200 sec   (1900 perm/sec)   p_kst 2.461895e-01   p_cons 1.673684e-03   p_joint 9.963158e-03

Joint ci ratio: 6.403315e-02	ci left: 9.213065e-03	ci right 9.825025e-03	k: 3711	n:390000
Cons ci ratio: 1.538640e-01	ci left: 1.533683e-03	ci right 1.791760e-03	k: 647	n:390000
KS ci ratio: 1.099101e-02	ci left: 2.445901e-01	ci right 2.472957e-01	k: 95917	n:390000
PRRX1   390000 perm   204 sec   (1909 perm/sec)   p_kst 2.459410e-01   p_cons 1.658974e-03   p_joint 9.515385e-03

Joint ci ratio: 6.325434e-02	ci left: 9.209077e-03	ci right 9.813060e-03	k: 3803	n:400000
Cons ci ratio: 1.515425e-01	ci left: 1.543431e-03	ci right 1.798874e-03	k: 667	n:400000
KS ci ratio: 1.085542e-02	ci left: 2.445162e-01	ci right 2.471875e-01	k: 98340	n:400000
PRRX1   400000 perm   209 sec   (1916 perm/sec)   p_kst 2.458500e-01   p_cons 1.667500e-03   p_joint 9.507500e-03

Joint ci ratio: 6.274764e-02	ci left: 9.133291e-03	ci right 9.727331e-03	k: 3865	n:410000
Cons ci ratio: 1.500897e-01	ci left: 1.536297e-03	ci right 1.787903e-03	k: 680	n:410000
KS ci ratio: 1.072318e-02	ci left: 2.444997e-01	ci right 2.471380e-01	k: 100785	n:410000
PRRX1   410000 perm   213 sec   (1922 perm/sec)   p_kst 2.458171e-01   p_cons 1.658537e-03   p_joint 9.426829e-03

Joint ci ratio: 6.705419e-02	ci left: 7.800688e-03	ci right 8.344227e-03	k: 3389	n:420000
Cons ci ratio: 1.486780e-01	ci left: 1.529514e-03	ci right 1.777443e-03	k: 693	n:420000
KS ci ratio: 1.059783e-02	ci left: 2.444081e-01	ci right 2.470144e-01	k: 103198	n:420000
PRRX1   420000 perm   218 sec   (1928 perm/sec)   p_kst 2.457095e-01   p_cons 1.650000e-03   p_joint 8.069048e-03

Joint ci ratio: 6.819502e-02	ci left: 7.365445e-03	ci right 7.887734e-03	k: 3278	n:430000
Cons ci ratio: 1.461707e-01	ci left: 1.547700e-03	ci right 1.793977e-03	k: 717	n:430000
KS ci ratio: 1.047191e-02	ci left: 2.444928e-01	ci right 2.470688e-01	k: 105685	n:430000
PRRX1   430000 perm   222 sec   (1934 perm/sec)   p_kst 2.457791e-01   p_cons 1.667442e-03   p_joint 7.623256e-03

Joint ci ratio: 6.098672e-02	ci left: 9.018480e-03	ci right 9.588010e-03	k: 4092	n:440000
Cons ci ratio: 1.434959e-01	ci left: 1.571666e-03	ci right 1.816789e-03	k: 744	n:440000
KS ci ratio: 1.035520e-02	ci left: 2.444013e-01	ci right 2.469475e-01	k: 108096	n:440000
PRRX1   440000 perm   227 sec   (1939 perm/sec)   p_kst 2.456727e-01   p_cons 1.690909e-03   p_joint 9.300000e-03

Joint ci ratio: 6.024012e-02	ci left: 9.041304e-03	ci right 9.605041e-03	k: 4194	n:450000
Cons ci ratio: 1.420731e-01	ci left: 1.568883e-03	ci right 1.810939e-03	k: 759	n:450000
KS ci ratio: 1.023911e-02	ci left: 2.444294e-01	ci right 2.469472e-01	k: 110559	n:450000
PRRX1   450000 perm   232 sec   (1943 perm/sec)   p_kst 2.456867e-01   p_cons 1.686667e-03   p_joint 9.320000e-03

Joint ci ratio: 5.928398e-02	ci left: 9.136001e-03	ci right 9.696292e-03	k: 4330	n:460000
Cons ci ratio: 1.406009e-01	ci left: 1.568329e-03	ci right 1.807583e-03	k: 775	n:460000
KS ci ratio: 1.012779e-02	ci left: 2.444217e-01	ci right 2.469119e-01	k: 113006	n:460000
PRRX1   460000 perm   236 sec   (1946 perm/sec)   p_kst 2.456652e-01   p_cons 1.684783e-03   p_joint 9.413043e-03

Joint ci ratio: 5.869781e-02	ci left: 9.123992e-03	ci right 9.677826e-03	k: 4417	n:470000
Cons ci ratio: 1.388229e-01	ci left: 1.576027e-03	ci right 1.813163e-03	k: 795	n:470000
KS ci ratio: 1.001519e-02	ci left: 2.445929e-01	ci right 2.470570e-01	k: 115537	n:470000
PRRX1   470000 perm   241 sec   (1949 perm/sec)   p_kst 2.458234e-01   p_cons 1.691489e-03   p_joint 9.397872e-03

Joint ci ratio: 5.915804e-02	ci left: 8.796338e-03	ci right 9.334612e-03	k: 4350	n:480000
Cons ci ratio: 1.373638e-01	ci left: 1.577386e-03	ci right 1.812028e-03	k: 812	n:480000
KS ci ratio: 9.910279e-03	ci left: 2.446074e-01	ci right 2.470457e-01	k: 117996	n:480000
PRRX1   480000 perm   246 sec   (1951 perm/sec)   p_kst 2.458250e-01   p_cons 1.691667e-03   p_joint 9.062500e-03

Joint ci ratio: 5.241535e-02	ci left: 1.098980e-02	ci right 1.158334e-02	k: 5529	n:490000
Cons ci ratio: 1.356228e-01	ci left: 1.586589e-03	ci right 1.819367e-03	k: 833	n:490000
KS ci ratio: 9.809673e-03	ci left: 2.445807e-01	ci right 2.469938e-01	k: 120435	n:490000
PRRX1   490000 perm   251 sec   (1953 perm/sec)   p_kst 2.457857e-01   p_cons 1.700000e-03   p_joint 1.128367e-02

Joint ci ratio: 5.235436e-02	ci left: 1.079761e-02	ci right 1.138007e-02	k: 5543	n:500000
Cons ci ratio: 1.339464e-01	ci left: 1.595441e-03	ci right 1.826394e-03	k: 854	n:500000
KS ci ratio: 9.710289e-03	ci left: 2.446230e-01	ci right 2.470119e-01	k: 122908	n:500000
PRRX1   500000 perm   256 sec   (1954 perm/sec)   p_kst 2.458160e-01   p_cons 1.708000e-03   p_joint 1.108600e-02

Joint ci ratio: 5.839388e-02	ci left: 8.502978e-03	ci right 9.016352e-03	k: 4466	n:510000
Cons ci ratio: 1.326343e-01	ci left: 1.596380e-03	ci right 1.825027e-03	k: 871	n:510000
KS ci ratio: 9.616510e-03	ci left: 2.445620e-01	ci right 2.469271e-01	k: 125329	n:510000
PRRX1   510000 perm   261 sec   (1954 perm/sec)   p_kst 2.457431e-01   p_cons 1.707843e-03   p_joint 8.756863e-03

Joint ci ratio: 5.824124e-02	ci left: 8.384925e-03	ci right 8.889803e-03	k: 4490	n:520000
Cons ci ratio: 1.312861e-01	ci left: 1.599153e-03	ci right 1.825687e-03	k: 889	n:520000
KS ci ratio: 9.528906e-03	ci left: 2.443672e-01	ci right 2.467087e-01	k: 127679	n:520000
PRRX1   520000 perm   266 sec   (1953 perm/sec)   p_kst 2.455365e-01   p_cons 1.709615e-03   p_joint 8.634615e-03

Joint ci ratio: 5.815467e-02	ci left: 8.252733e-03	ci right 8.748888e-03	k: 4504	n:530000
Cons ci ratio: 1.299782e-01	ci left: 1.601833e-03	ci right 1.826312e-03	k: 907	n:530000
KS ci ratio: 9.440091e-03	ci left: 2.443192e-01	ci right 2.466383e-01	k: 130103	n:530000
PRRX1   530000 perm   272 sec   (1952 perm/sec)   p_kst 2.454774e-01   p_cons 1.711321e-03   p_joint 8.498113e-03

Joint ci ratio: 5.374965e-02	ci left: 9.491459e-03	ci right 1.001752e-02	k: 5266	n:540000
Cons ci ratio: 1.291283e-01	ci left: 1.593671e-03	ci right 1.815434e-03	k: 919	n:540000
KS ci ratio: 9.352218e-03	ci left: 2.443322e-01	ci right 2.466298e-01	k: 132559	n:540000
PRRX1   540000 perm   277 sec   (1950 perm/sec)   p_kst 2.454796e-01   p_cons 1.701852e-03   p_joint 9.751852e-03

Joint ci ratio: 5.321640e-02	ci left: 9.509039e-03	ci right 1.003069e-02	k: 5372	n:550000
Cons ci ratio: 1.270716e-01	ci left: 1.617494e-03	ci right 1.838717e-03	k: 949	n:550000
KS ci ratio: 9.267073e-03	ci left: 2.443321e-01	ci right 2.466087e-01	k: 135008	n:550000
PRRX1   550000 perm   282 sec   (1949 perm/sec)   p_kst 2.454691e-01   p_cons 1.725455e-03   p_joint 9.767273e-03

Joint ci ratio: 5.471082e-02	ci left: 8.835326e-03	ci right 9.334058e-03	k: 5086	n:560000
Cons ci ratio: 1.257544e-01	ci left: 1.623195e-03	ci right 1.842725e-03	k: 969	n:560000
KS ci ratio: 9.186558e-03	ci left: 2.442377e-01	ci right 2.464935e-01	k: 137404	n:560000
PRRX1   560000 perm   288 sec   (1946 perm/sec)   p_kst 2.453643e-01   p_cons 1.730357e-03   p_joint 9.082143e-03

Joint ci ratio: 5.481316e-02	ci left: 8.649151e-03	ci right 9.138316e-03	k: 5068	n:570000
Cons ci ratio: 1.247935e-01	ci left: 1.620209e-03	ci right 1.837537e-03	k: 984	n:570000
KS ci ratio: 9.104050e-03	ci left: 2.443113e-01	ci right 2.465474e-01	k: 139894	n:570000
PRRX1   570000 perm   293 sec   (1944 perm/sec)   p_kst 2.454281e-01   p_cons 1.726316e-03   p_joint 8.891228e-03

Joint ci ratio: 5.430104e-02	ci left: 8.663289e-03	ci right 9.148532e-03	k: 5164	n:580000
Cons ci ratio: 1.237923e-01	ci left: 1.619003e-03	ci right 1.834299e-03	k: 1000	n:580000
KS ci ratio: 9.023600e-03	ci left: 2.443876e-01	ci right 2.466046e-01	k: 142387	n:580000
PRRX1   580000 perm   299 sec   (1941 perm/sec)   p_kst 2.454948e-01   p_cons 1.724138e-03   p_joint 8.903448e-03

Joint ci ratio: 5.379785e-02	ci left: 8.678640e-03	ci right 9.160099e-03	k: 5261	n:590000
Cons ci ratio: 1.230574e-01	ci left: 1.611273e-03	ci right 1.824176e-03	k: 1012	n:590000
KS ci ratio: 8.947374e-03	ci left: 2.443734e-01	ci right 2.465714e-01	k: 144828	n:590000
PRRX1   590000 perm   304 sec   (1939 perm/sec)   p_kst 2.454712e-01   p_cons 1.715254e-03   p_joint 8.916949e-03

Joint ci ratio: 5.072173e-02	ci left: 9.606587e-03	ci right 1.010816e-02	k: 5913	n:600000
Cons ci ratio: 1.220377e-01	ci left: 1.611883e-03	ci right 1.822975e-03	k: 1029	n:600000
KS ci ratio: 8.874964e-03	ci left: 2.442799e-01	ci right 2.464592e-01	k: 147221	n:600000
PRRX1   600000 perm   310 sec   (1936 perm/sec)   p_kst 2.453683e-01   p_cons 1.715000e-03   p_joint 9.855000e-03

Joint ci ratio: 4.942176e-02	ci left: 9.955837e-03	ci right 1.046195e-02	k: 6226	n:610000
Cons ci ratio: 1.212170e-01	ci left: 1.607711e-03	ci right 1.816739e-03	k: 1043	n:610000
KS ci ratio: 8.801829e-03	ci left: 2.442927e-01	ci right 2.464540e-01	k: 149677	n:610000
PRRX1   610000 perm   316 sec   (1932 perm/sec)   p_kst 2.453721e-01   p_cons 1.709836e-03   p_joint 1.020656e-02

Joint ci ratio: 4.801638e-02	ci left: 1.038004e-02	ci right 1.089229e-02	k: 6593	n:620000
Cons ci ratio: 1.202420e-01	ci left: 1.608372e-03	ci right 1.815684e-03	k: 1060	n:620000
KS ci ratio: 8.729711e-03	ci left: 2.443373e-01	ci right 2.464812e-01	k: 152153	n:620000
PRRX1   620000 perm   322 sec   (1928 perm/sec)   p_kst 2.454081e-01   p_cons 1.709677e-03   p_joint 1.063387e-02

Joint ci ratio: 4.904940e-02	ci left: 9.790263e-03	ci right 1.028410e-02	k: 6322	n:630000
Cons ci ratio: 1.192901e-01	ci left: 1.609018e-03	ci right 1.814656e-03	k: 1077	n:630000
KS ci ratio: 8.664165e-03	ci left: 2.441745e-01	ci right 2.463008e-01	k: 154499	n:630000
PRRX1   630000 perm   327 sec   (1924 perm/sec)   p_kst 2.452365e-01   p_cons 1.709524e-03   p_joint 1.003492e-02

Joint ci ratio: 4.904154e-02	ci left: 9.641902e-03	ci right 1.012817e-02	k: 6325	n:640000
Cons ci ratio: 1.184147e-01	ci left: 1.608133e-03	ci right 1.812045e-03	k: 1093	n:640000
KS ci ratio: 8.594192e-03	ci left: 2.442696e-01	ci right 2.463795e-01	k: 157007	n:640000
PRRX1   640000 perm   333 sec   (1919 perm/sec)   p_kst 2.453234e-01   p_cons 1.707812e-03   p_joint 9.882812e-03

Joint ci ratio: 4.867372e-02	ci left: 9.639453e-03	ci right 1.012185e-02	k: 6421	n:650000
Cons ci ratio: 1.173466e-01	ci left: 1.613255e-03	ci right 1.815843e-03	k: 1113	n:650000
KS ci ratio: 8.531522e-03	ci left: 2.441177e-01	ci right 2.462108e-01	k: 159356	n:650000
PRRX1   650000 perm   340 sec   (1913 perm/sec)   p_kst 2.451631e-01   p_cons 1.712308e-03   p_joint 9.878462e-03

Joint ci ratio: 4.829908e-02	ci left: 9.643079e-03	ci right 1.012184e-02	k: 6521	n:660000
Cons ci ratio: 1.164614e-01	ci left: 1.613816e-03	ci right 1.814840e-03	k: 1130	n:660000
KS ci ratio: 8.467358e-03	ci left: 2.440944e-01	ci right 2.461715e-01	k: 161787	n:660000
PRRX1   660000 perm   360 sec   (1835 perm/sec)   p_kst 2.451318e-01   p_cons 1.712121e-03   p_joint 9.880303e-03

Joint ci ratio: 4.720052e-02	ci left: 9.948979e-03	ci right 1.043139e-02	k: 6826	n:670000
Cons ci ratio: 1.155455e-01	ci left: 1.615816e-03	ci right 1.815398e-03	k: 1148	n:670000
KS ci ratio: 8.403333e-03	ci left: 2.441285e-01	ci right 2.461901e-01	k: 164256	n:670000
PRRX1   670000 perm   398 sec   (1683 perm/sec)   p_kst 2.451582e-01   p_cons 1.713433e-03   p_joint 1.018806e-02

Joint ci ratio: 4.687575e-02	ci left: 9.940732e-03	ci right 1.041934e-02	k: 6921	n:680000
Cons ci ratio: 1.147988e-01	ci left: 1.613477e-03	ci right 1.811395e-03	k: 1163	n:680000
KS ci ratio: 8.340937e-03	ci left: 2.441529e-01	ci right 2.461993e-01	k: 166719	n:680000
PRRX1   680000 perm   421 sec   (1615 perm/sec)   p_kst 2.451750e-01   p_cons 1.710294e-03   p_joint 1.017794e-02

Joint ci ratio: 4.615720e-02	ci left: 1.010609e-02	ci right 1.058500e-02	k: 7137	n:690000
Cons ci ratio: 1.139695e-01	ci left: 1.614026e-03	ci right 1.810485e-03	k: 1180	n:690000
KS ci ratio: 8.280234e-03	ci left: 2.441621e-01	ci right 2.461937e-01	k: 169172	n:690000
PRRX1   690000 perm   435 sec   (1587 perm/sec)   p_kst 2.451768e-01   p_cons 1.710145e-03   p_joint 1.034348e-02

Joint ci ratio: 4.578624e-02	ci left: 1.012552e-02	ci right 1.060140e-02	k: 7253	n:700000
Cons ci ratio: 1.128283e-01	ci left: 1.624282e-03	ci right 1.819878e-03	k: 1204	n:700000
KS ci ratio: 8.221092e-03	ci left: 2.441597e-01	ci right 2.461767e-01	k: 171617	n:700000
PRRX1   700000 perm   448 sec   (1562 perm/sec)   p_kst 2.451671e-01   p_cons 1.720000e-03   p_joint 1.036143e-02

Joint ci ratio: 4.598536e-02	ci left: 9.897955e-03	ci right 1.036521e-02	k: 7192	n:710000
Cons ci ratio: 1.116752e-01	ci left: 1.635628e-03	ci right 1.830445e-03	k: 1229	n:710000
KS ci ratio: 8.164163e-03	ci left: 2.441139e-01	ci right 2.461164e-01	k: 174031	n:710000
PRRX1   710000 perm   462 sec   (1537 perm/sec)   p_kst 2.451141e-01   p_cons 1.730986e-03   p_joint 1.012958e-02

Joint ci ratio: 4.568170e-02	ci left: 9.892288e-03	ci right 1.035611e-02	k: 7288	n:720000
Cons ci ratio: 1.110006e-01	ci left: 1.633164e-03	ci right 1.826436e-03	k: 1244	n:720000
KS ci ratio: 8.107152e-03	ci left: 2.441262e-01	ci right 2.461148e-01	k: 176486	n:720000
PRRX1   720000 perm   475 sec   (1516 perm/sec)   p_kst 2.451194e-01   p_cons 1.727778e-03   p_joint 1.012222e-02

Joint ci ratio: 4.537777e-02	ci left: 9.889495e-03	ci right 1.035002e-02	k: 7386	n:730000
Cons ci ratio: 1.102942e-01	ci left: 1.632103e-03	ci right 1.823940e-03	k: 1260	n:730000
KS ci ratio: 8.052839e-03	ci left: 2.440684e-01	ci right 2.460432e-01	k: 178890	n:730000
PRRX1   730000 perm   489 sec   (1493 perm/sec)   p_kst 2.450548e-01   p_cons 1.726027e-03   p_joint 1.011781e-02

Joint ci ratio: 4.468942e-02	ci left: 1.006051e-02	ci right 1.052171e-02	k: 7614	n:740000
Cons ci ratio: 1.096012e-01	ci left: 1.631075e-03	ci right 1.821508e-03	k: 1276	n:740000
KS ci ratio: 7.998055e-03	ci left: 2.440838e-01	ci right 2.460452e-01	k: 181347	n:740000
PRRX1   740000 perm   503 sec   (1472 perm/sec)   p_kst 2.450635e-01   p_cons 1.724324e-03   p_joint 1.028919e-02

Joint ci ratio: 4.478470e-02	ci left: 9.885481e-03	ci right 1.033965e-02	k: 7583	n:750000
Cons ci ratio: 1.090902e-01	ci left: 1.624889e-03	ci right 1.813659e-03	k: 1288	n:750000
KS ci ratio: 7.943487e-03	ci left: 2.441401e-01	ci right 2.460885e-01	k: 183835	n:750000
PRRX1   750000 perm   516 sec   (1452 perm/sec)   p_kst 2.451133e-01   p_cons 1.717333e-03   p_joint 1.011067e-02

Joint ci ratio: 4.444272e-02	ci left: 9.907641e-03	ci right 1.035926e-02	k: 7700	n:760000
Cons ci ratio: 1.085445e-01	ci left: 1.620149e-03	ci right 1.807366e-03	k: 1301	n:760000
KS ci ratio: 7.891198e-03	ci left: 2.441398e-01	ci right 2.460753e-01	k: 186281	n:760000
PRRX1   760000 perm   527 sec   (1442 perm/sec)   p_kst 2.451066e-01   p_cons 1.711842e-03   p_joint 1.013158e-02

Joint ci ratio: 4.418275e-02	ci left: 9.895842e-03	ci right 1.034422e-02	k: 7791	n:770000
Cons ci ratio: 1.077610e-01	ci left: 1.623116e-03	ci right 1.809237e-03	k: 1320	n:770000
KS ci ratio: 7.841305e-03	ci left: 2.440747e-01	ci right 2.459974e-01	k: 188677	n:770000
PRRX1   770000 perm   534 sec   (1441 perm/sec)   p_kst 2.450351e-01   p_cons 1.714286e-03   p_joint 1.011818e-02

Joint ci ratio: 4.389354e-02	ci left: 9.899570e-03	ci right 1.034511e-02	k: 7894	n:780000
Cons ci ratio: 1.069941e-01	ci left: 1.626011e-03	ci right 1.811054e-03	k: 1339	n:780000
KS ci ratio: 7.789916e-03	ci left: 2.441265e-01	ci right 2.460369e-01	k: 191163	n:780000
PRRX1   780000 perm   542 sec   (1440 perm/sec)   p_kst 2.450808e-01   p_cons 1.716667e-03   p_joint 1.012051e-02

Joint ci ratio: 4.362372e-02	ci left: 9.896952e-03	ci right 1.033956e-02	k: 7992	n:790000
Cons ci ratio: 1.064792e-01	ci left: 1.621445e-03	ci right 1.805024e-03	k: 1352	n:790000
KS ci ratio: 7.740398e-03	ci left: 2.441353e-01	ci right 2.460336e-01	k: 193616	n:790000
PRRX1   790000 perm   550 sec   (1436 perm/sec)   p_kst 2.450835e-01   p_cons 1.711392e-03   p_joint 1.011646e-02

Joint ci ratio: 4.333987e-02	ci left: 9.903063e-03	ci right 1.034299e-02	k: 8097	n:800000
Cons ci ratio: 1.058939e-01	ci left: 1.619429e-03	ci right 1.801709e-03	k: 1367	n:800000
KS ci ratio: 7.691007e-03	ci left: 2.441827e-01	ci right 2.460692e-01	k: 196100	n:800000
PRRX1   800000 perm   560 sec   (1430 perm/sec)   p_kst 2.451250e-01   p_cons 1.708750e-03   p_joint 1.012125e-02

Joint ci ratio: 4.305090e-02	ci left: 9.913919e-03	ci right 1.035132e-02	k: 8206	n:810000
Cons ci ratio: 1.056247e-01	ci left: 1.607849e-03	ci right 1.788337e-03	k: 1374	n:810000
KS ci ratio: 7.643417e-03	ci left: 2.441870e-01	ci right 2.460618e-01	k: 198550	n:810000
PRRX1   810000 perm   567 sec   (1429 perm/sec)   p_kst 2.451235e-01   p_cons 1.696296e-03   p_joint 1.013086e-02

Joint ci ratio: 4.281707e-02	ci left: 9.901594e-03	ci right 1.033602e-02	k: 8296	n:820000
Cons ci ratio: 1.049777e-01	ci left: 1.608427e-03	ci right 1.787806e-03	k: 1391	n:820000
KS ci ratio: 7.595397e-03	ci left: 2.442545e-01	ci right 2.461180e-01	k: 201052	n:820000
PRRX1   820000 perm   575 sec   (1427 perm/sec)   p_kst 2.451854e-01   p_cons 1.696341e-03   p_joint 1.011707e-02

Joint ci ratio: 4.253836e-02	ci left: 9.912223e-03	ci right 1.034422e-02	k: 8405	n:830000
Cons ci ratio: 1.042314e-01	ci left: 1.612514e-03	ci right 1.790992e-03	k: 1411	n:830000
KS ci ratio: 7.550704e-03	ci left: 2.442014e-01	ci right 2.460534e-01	k: 203455	n:830000
PRRX1   830000 perm   582 sec   (1425 perm/sec)   p_kst 2.451265e-01   p_cons 1.700000e-03   p_joint 1.012651e-02

Joint ci ratio: 4.229514e-02	ci left: 9.908471e-03	ci right 1.033777e-02	k: 8502	n:840000
Cons ci ratio: 1.036096e-01	ci left: 1.613030e-03	ci right 1.790435e-03	k: 1428	n:840000
KS ci ratio: 7.505897e-03	ci left: 2.441935e-01	ci right 2.460345e-01	k: 205895	n:840000
PRRX1   840000 perm   590 sec   (1424 perm/sec)   p_kst 2.451131e-01   p_cons 1.700000e-03   p_joint 1.012143e-02

Joint ci ratio: 4.206345e-02	ci left: 9.901322e-03	ci right 1.032791e-02	k: 8596	n:850000
Cons ci ratio: 1.032135e-01	ci left: 1.606659e-03	ci right 1.782647e-03	k: 1439	n:850000
KS ci ratio: 7.461997e-03	ci left: 2.441800e-01	ci right 2.460100e-01	k: 208330	n:850000
PRRX1   850000 perm   618 sec   (1375 perm/sec)   p_kst 2.450941e-01   p_cons 1.692941e-03   p_joint 1.011294e-02

Joint ci ratio: 4.181610e-02	ci left: 9.903552e-03	ci right 1.032766e-02	k: 8698	n:860000
Cons ci ratio: 1.027864e-01	ci left: 1.601571e-03	ci right 1.776232e-03	k: 1451	n:860000
KS ci ratio: 7.417880e-03	ci left: 2.442156e-01	ci right 2.460350e-01	k: 210807	n:860000
PRRX1   860000 perm   626 sec   (1374 perm/sec)   p_kst 2.451244e-01   p_cons 1.687209e-03   p_joint 1.011395e-02

Joint ci ratio: 4.162086e-02	ci left: 9.882985e-03	ci right 1.030419e-02	k: 8780	n:870000
Cons ci ratio: 1.020161e-01	ci left: 1.607802e-03	ci right 1.781750e-03	k: 1473	n:870000
KS ci ratio: 7.374833e-03	ci left: 2.442354e-01	ci right 2.460444e-01	k: 213271	n:870000
PRRX1   870000 perm   634 sec   (1372 perm/sec)   p_kst 2.451391e-01   p_cons 1.693103e-03   p_joint 1.009195e-02

Joint ci ratio: 4.141181e-02	ci left: 9.870764e-03	ci right 1.028929e-02	k: 8869	n:880000
Cons ci ratio: 1.015353e-01	ci left: 1.605036e-03	ci right 1.777817e-03	k: 1487	n:880000
KS ci ratio: 7.333676e-03	ci left: 2.441970e-01	ci right 2.459956e-01	k: 215684	n:880000
PRRX1   880000 perm   643 sec   (1369 perm/sec)   p_kst 2.450955e-01   p_cons 1.689773e-03   p_joint 1.007841e-02

Joint ci ratio: 4.118034e-02	ci left: 9.871056e-03	ci right 1.028720e-02	k: 8969	n:890000
Cons ci ratio: 1.011624e-01	ci left: 1.599047e-03	ci right 1.770514e-03	k: 1498	n:890000
KS ci ratio: 7.292225e-03	ci left: 2.442089e-01	ci right 2.459973e-01	k: 218141	n:890000
PRRX1   890000 perm   651 sec   (1367 perm/sec)   p_kst 2.451022e-01   p_cons 1.683146e-03   p_joint 1.007753e-02

Joint ci ratio: 4.165908e-02	ci left: 9.539224e-03	ci right 9.946163e-03	k: 8767	n:900000
Cons ci ratio: 1.005272e-01	ci left: 1.601859e-03	ci right 1.772485e-03	k: 1517	n:900000
KS ci ratio: 7.252842e-03	ci left: 2.441506e-01	ci right 2.459289e-01	k: 220535	n:900000
PRRX1   900000 perm   659 sec   (1366 perm/sec)   p_kst 2.450389e-01   p_cons 1.685556e-03   p_joint 9.741111e-03

Joint ci ratio: 4.134117e-02	ci left: 9.581213e-03	ci right 9.986751e-03	k: 8902	n:910000
Cons ci ratio: 1.000342e-01	ci left: 1.600326e-03	ci right 1.769904e-03	k: 1532	n:910000
KS ci ratio: 7.213318e-03	ci left: 2.441331e-01	ci right 2.459015e-01	k: 222965	n:910000
PRRX1   910000 perm   667 sec   (1364 perm/sec)   p_kst 2.450165e-01   p_cons 1.683516e-03   p_joint 9.782418e-03

Joint ci ratio: 4.112703e-02	ci left: 9.577114e-03	ci right 9.980329e-03	k: 8995	n:920000
Cons ci ratio: 9.954849e-02	ci left: 1.598829e-03	ci right 1.767377e-03	k: 1547	n:920000
KS ci ratio: 7.174560e-03	ci left: 2.441095e-01	ci right 2.458682e-01	k: 225389	n:920000
PRRX1   920000 perm   675 sec   (1363 perm/sec)   p_kst 2.449880e-01   p_cons 1.681522e-03   p_joint 9.777174e-03

Outputting figure to mutsig2_images.part000000000138/PRRX1.4_813_920000_0.24499_0.0016815_0.0097772.png
                gene_name: PRRX1
               theta_stop: 0.100 
                    nperm: 920000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.0017 
      ci_cons_bounds_left: 0.0016 
     ci_cons_bounds_right: 0.0018 
                  p_joint: 0.0098 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.0100 

Current progress: 46 percent done.
PRSS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
Cons ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
KS ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
PRSS16   10000 perm   1 sec   (6840 perm/sec)   p_kst 5.470000e-01   p_cons 1.745000e-01   p_joint 3.871000e-01

Outputting figure to mutsig2_images.part000000000138/PRSS16.4_1593_10000_0.547_0.1745_0.3871.png
                gene_name: PRSS16
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 48 percent done.
PRNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
KS ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
PRNP   10000 perm   1 sec   (6958 perm/sec)   p_kst 7.672000e-01   p_cons 2.172000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRNP.3_766_10000_0.7672_0.2172_1.png
                gene_name: PRNP
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
PROC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
KS ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
PROC   10000 perm   2 sec   (6630 perm/sec)   p_kst 6.709000e-01   p_cons 8.688000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PROC.3_1418_10000_0.6709_0.8688_1.png
                gene_name: PROC
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
PROCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
Cons ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
KS ci ratio: 6.172504e-02	ci left: 2.784441e-01	ci right 2.962799e-01	k: 2873	n:10000
PROCA1   10000 perm   1 sec   (6869 perm/sec)   p_kst 2.873000e-01   p_cons 6.387000e-01   p_joint 4.324000e-01

Outputting figure to mutsig2_images.part000000000138/PROCA1.3_1027_10000_0.2873_0.6387_0.4324.png
                gene_name: PROCA1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
PROKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
KS ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
PROKR1   10000 perm   2 sec   (6643 perm/sec)   p_kst 9.089000e-01   p_cons 3.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PROKR1.3_1188_10000_0.9089_0.3712_1.png
                gene_name: PROKR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
PRPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
KS ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
PRPF3   10000 perm   2 sec   (6576 perm/sec)   p_kst 5.300000e-01   p_cons 6.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPF3.3_2112_10000_0.53_0.6481_1.png
                gene_name: PRPF3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
PRPF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
Cons ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
KS ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
PRPF4   10000 perm   2 sec   (6656 perm/sec)   p_kst 8.039000e-01   p_cons 6.100000e-02   p_joint 4.682000e-01

Joint ci ratio: 3.482705e-02	ci left: 3.809891e-01	ci right 3.945436e-01	k: 7755	n:20000
Cons ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
KS ci ratio: 1.385522e-02	ci left: 7.944890e-01	ci right 8.056237e-01	k: 16002	n:20000
PRPF4   20000 perm   3 sec   (5977 perm/sec)   p_kst 8.001000e-01   p_cons 5.960000e-02   p_joint 3.877500e-01

Joint ci ratio: 2.872974e-02	ci left: 3.773943e-01	ci right 3.884284e-01	k: 11487	n:30000
Cons ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
KS ci ratio: 1.137157e-02	ci left: 7.938483e-01	ci right 8.029605e-01	k: 23953	n:30000
PRPF4   30000 perm   5 sec   (5711 perm/sec)   p_kst 7.984333e-01   p_cons 5.986667e-02   p_joint 3.829000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4.3_1625_30000_0.79843_0.059867_0.3829.png
                gene_name: PRPF4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
PRPF40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
Cons ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
KS ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
PRPF40A   10000 perm   2 sec   (6349 perm/sec)   p_kst 9.881000e-01   p_cons 1.605000e-01   p_joint 5.598000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40A.3_2897_10000_0.9881_0.1605_0.5598.png
                gene_name: PRPF40A
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 62 percent done.
PRPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
KS ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
PRPS1   10000 perm   1 sec   (7002 perm/sec)   p_kst 4.807000e-01   p_cons 5.418000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPS1.3_985_10000_0.4807_0.5418_1.png
                gene_name: PRPS1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
PRPS1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.753719e-03	ci left: 9.759962e-01	ci right 9.817201e-01	k: 9790	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
PRPS1L1   10000 perm   2 sec   (6520 perm/sec)   p_kst 5.772000e-01   p_cons 3.499000e-01   p_joint 9.790000e-01

Outputting figure to mutsig2_images.part000000000138/PRPS1L1.3_961_10000_0.5772_0.3499_0.979.png
                gene_name: PRPS1L1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 65 percent done.
PRR23A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
KS ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
PRR23A   10000 perm   1 sec   (7369 perm/sec)   p_kst 4.925000e-01   p_cons 4.249000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRR23A.3_805_10000_0.4925_0.4249_1.png
                gene_name: PRR23A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
PRSS12   10000 perm   2 sec   (6216 perm/sec)   p_kst 7.626000e-01   p_cons 9.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRSS12.3_2680_10000_0.7626_0.9718_1.png
                gene_name: PRSS12
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
KS ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
PRM2   10000 perm   1 sec   (7802 perm/sec)   p_kst 9.373000e-01   p_cons 9.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRM2.2_317_10000_0.9373_0.9745_1.png
                gene_name: PRM2
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
PRMT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
Cons ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
KS ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
PRMT10   10000 perm   2 sec   (5730 perm/sec)   p_kst 4.551000e-01   p_cons 8.530000e-01   p_joint 9.717000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT10.2_2586_10000_0.4551_0.853_0.9717.png
                gene_name: PRMT10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 73 percent done.
PRMT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.778619e-02	ci left: 8.217801e-01	ci right 8.366276e-01	k: 8293	n:10000
Cons ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
KS ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
PRMT3   10000 perm   2 sec   (6087 perm/sec)   p_kst 7.492000e-01   p_cons 2.205000e-01   p_joint 8.293000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT3.2_1660_10000_0.7492_0.2205_0.8293.png
                gene_name: PRMT3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 75 percent done.
PRMT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
Cons ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
KS ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
PRMT5   10000 perm   1 sec   (7009 perm/sec)   p_kst 5.349000e-01   p_cons 2.537000e-01   p_joint 9.604000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT5.2_2045_10000_0.5349_0.2537_0.9604.png
                gene_name: PRMT5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 77 percent done.
PROK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
KS ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
PROK2   10000 perm   2 sec   (6535 perm/sec)   p_kst 5.370000e-02   p_cons 5.505000e-01   p_joint 7.310000e-02

Joint ci ratio: 3.930017e-02	ci left: 3.256224e-01	ci right 3.387264e-01	k: 6643	n:20000
Cons ci ratio: 2.491166e-02	ci left: 5.462274e-01	ci right 5.600571e-01	k: 11063	n:20000
KS ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
PROK2   20000 perm   3 sec   (6063 perm/sec)   p_kst 5.375000e-02   p_cons 5.531500e-01   p_joint 3.321500e-01

Joint ci ratio: 8.664648e-02	ci left: 6.109278e-02	ci right 6.665872e-02	k: 1915	n:30000
Cons ci ratio: 2.043483e-02	ci left: 5.452167e-01	ci right 5.565068e-01	k: 16526	n:30000
KS ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
PROK2   30000 perm   5 sec   (6004 perm/sec)   p_kst 5.360000e-02   p_cons 5.508667e-01   p_joint 6.383333e-02

Outputting figure to mutsig2_images.part000000000138/PROK2.2_406_30000_0.0536_0.55087_0.063833.png
                gene_name: PROK2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 79 percent done.
PROSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
Cons ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
PROSC   10000 perm   1 sec   (7135 perm/sec)   p_kst 2.037000e-01   p_cons 2.771000e-01   p_joint 7.629000e-01

Outputting figure to mutsig2_images.part000000000138/PROSC.2_860_10000_0.2037_0.2771_0.7629.png
                gene_name: PROSC
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 81 percent done.
PRPF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
Cons ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
KS ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
PRPF18   10000 perm   1 sec   (7406 perm/sec)   p_kst 3.564000e-01   p_cons 3.219000e-01   p_joint 4.409000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF18.2_1069_10000_0.3564_0.3219_0.4409.png
                gene_name: PRPF18
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 83 percent done.
PRPF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
Cons ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
PRPF19   10000 perm   2 sec   (6065 perm/sec)   p_kst 6.073000e-01   p_cons 3.117000e-01   p_joint 8.993000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF19.2_1579_10000_0.6073_0.3117_0.8993.png
                gene_name: PRPF19
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 85 percent done.
PRPF39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
Cons ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
PRPF39   10000 perm   1 sec   (6700 perm/sec)   p_kst 2.629000e-01   p_cons 2.664000e-01   p_joint 4.100000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF39.2_2062_10000_0.2629_0.2664_0.41.png
                gene_name: PRPF39
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 87 percent done.
PRPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
PRPS2   10000 perm   1 sec   (6704 perm/sec)   p_kst 6.020000e-02   p_cons 4.580000e-02   p_joint 2.762000e-01

Joint ci ratio: 5.627305e-02	ci left: 1.897265e-01	ci right 2.007622e-01	k: 3904	n:20000
Cons ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
KS ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
PRPS2   20000 perm   3 sec   (5891 perm/sec)   p_kst 5.935000e-02   p_cons 4.485000e-02   p_joint 1.952000e-01

Joint ci ratio: 4.602752e-02	ci left: 1.901993e-01	ci right 1.991933e-01	k: 5840	n:30000
Cons ci ratio: 1.053673e-01	ci left: 4.177175e-02	ci right 4.645039e-02	k: 1322	n:30000
KS ci ratio: 9.013996e-02	ci left: 5.662084e-02	ci right 6.199823e-02	k: 1778	n:30000
PRPS2   30000 perm   5 sec   (5699 perm/sec)   p_kst 5.926667e-02   p_cons 4.406667e-02   p_joint 1.946667e-01

Joint ci ratio: 4.135096e-02	ci left: 1.796429e-01	ci right 1.872531e-01	k: 7337	n:40000
Cons ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
KS ci ratio: 7.795902e-02	ci left: 5.712769e-02	ci right 6.178652e-02	k: 2377	n:40000
PRPS2   40000 perm   7 sec   (5690 perm/sec)   p_kst 5.942500e-02   p_cons 4.377500e-02   p_joint 1.834250e-01

Outputting figure to mutsig2_images.part000000000138/PRPS2.2_994_40000_0.059425_0.043775_0.18343.png
                gene_name: PRPS2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
PRR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
Cons ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
KS ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
PRR11   10000 perm   2 sec   (6493 perm/sec)   p_kst 3.752000e-01   p_cons 7.720000e-01   p_joint 5.853000e-01

Outputting figure to mutsig2_images.part000000000138/PRR11.2_1119_10000_0.3752_0.772_0.5853.png
                gene_name: PRR11
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 90 percent done.
PRR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
Cons ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
PRR19   10000 perm   2 sec   (6347 perm/sec)   p_kst 9.097000e-01   p_cons 1.074000e-01   p_joint 1.604000e-01

Joint ci ratio: 6.707764e-02	ci left: 1.409358e-01	ci right 1.507674e-01	k: 2916	n:20000
Cons ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
KS ci ratio: 8.654629e-03	ci left: 9.071727e-01	ci right 9.151073e-01	k: 18224	n:20000
PRR19   20000 perm   4 sec   (5621 perm/sec)   p_kst 9.112000e-01   p_cons 1.055000e-01   p_joint 1.458000e-01

Outputting figure to mutsig2_images.part000000000138/PRR19.2_1079_20000_0.9112_0.1055_0.1458.png
                gene_name: PRR19
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 92 percent done.
PRR23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.615380e-03	ci left: 9.497099e-01	ci right 9.580231e-01	k: 9540	n:10000
Cons ci ratio: 2.940971e-03	ci left: 9.928469e-01	ci right 9.958540e-01	k: 9945	n:10000
KS ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
PRR23B   10000 perm   1 sec   (7728 perm/sec)   p_kst 3.673000e-01   p_cons 9.945000e-01   p_joint 9.540000e-01

Outputting figure to mutsig2_images.part000000000138/PRR23B.2_802_10000_0.3673_0.9945_0.954.png
                gene_name: PRR23B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 94 percent done.
PRR5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
PRR5L   10000 perm   1 sec   (7017 perm/sec)   p_kst 4.264000e-01   p_cons 8.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRR5L.2_1145_10000_0.4264_0.8321_1.png
                gene_name: PRR5L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PRSS21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360699e-03	ci left: 9.909413e-01	ci right 9.943623e-01	k: 9928	n:10000
Cons ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
KS ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
PRSS21   10000 perm   1 sec   (7715 perm/sec)   p_kst 8.822000e-01   p_cons 9.834000e-01   p_joint 9.928000e-01

Outputting figure to mutsig2_images.part000000000138/PRSS21.2_969_10000_0.8822_0.9834_0.9928.png
                gene_name: PRSS21
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
PRSS23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
KS ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
PRSS23   10000 perm   1 sec   (7442 perm/sec)   p_kst 5.869000e-01   p_cons 6.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRSS23.2_1156_10000_0.5869_0.6634_1.png
                gene_name: PRSS23
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000138
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 138 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 4422342: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000139> was used as the working directory.
Started at Wed Oct 24 18:04:26 2012
Results reported at Wed Oct 24 20:13:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000139.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000139.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 139  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000139.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7854.73 sec.
    Max Memory :      8812 MB
    Max Swap   :     11385 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
139
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 139
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 139: processing genes 12486 - 12575
Calculating significance of each gene.
Using projection method.
12486	PRSS27	1
12487	PRSS3	6.163466e-01
12488	PRSS33	1
12489	PRSS35	1
12490	PRSS36	6.120569e-01
12491	PRSS37	1
12492	PRSS38	1
12493	PRSS42	4.649048e-01
12494	PRSS45	1
12495	PRSS48	5.561936e-01
12496	PRSS50	8.170182e-01
12497	PRSS53	9.626685e-01
12498	PRSS54	1
12499	PRSS55	5.915181e-01
12500	PRSS8	1
12501	PRSSL1	6.071093e-01
12502	PRTFDC1	1
12503	PRTG	9.786257e-01
12504	PRTN3	1
12505	PRUNE	5.712424e-01
12506	PRUNE2	9.985903e-01
12507	PRX	9.992413e-01
12508	PSAP	7.577111e-01
12509	PSAT1	1
12510	PSCA	1
12511	PSD	9.672745e-01
12512	PSD2	1
12513	PSD3	7.884301e-01
12514	PSD4	9.931730e-01
12515	PSEN1	8.215431e-01
12516	PSEN2	3.956533e-01
12517	PSENEN	3.932496e-01
12518	PSG1	6.365501e-01
12519	PSG11	2.106464e-01
12520	PSG2	7.718150e-01
12521	PSG3	3.335654e-03
12522	PSG4	1.403131e-01
12523	PSG5	8.695607e-01
12524	PSG6	8.752944e-05
12525	PSG7	3.628348e-03
12526	PSG8	8.287507e-02
12527	PSG9	1
12528	PSIP1	8.523017e-01
12529	PSKH1	8.062541e-01
12530	PSKH2	1
12531	PSMA1	1
12532	PSMA2	1
12533	PSMA3	2.612903e-01
12534	PSMA4	5.160930e-01
12535	PSMA5	1
12536	PSMA6	3.992299e-01
12537	PSMA7	7.204014e-01
12538	PSMA8	8.042411e-01
12539	PSMB1	1
12540	PSMB10	1
12541	PSMB11	3.289930e-01
12542	PSMB2	1
12543	PSMB3	1
12544	PSMB4	5.671976e-01
12545	PSMB5	7.808730e-01
12546	PSMB6	6.061052e-01
12547	PSMB7	1
12548	PSMB8	1
12549	PSMB9	1
12550	PSMC1	8.331318e-01
12551	PSMC2	7.399716e-01
12552	PSMC3	1
12553	PSMC3IP	3.416930e-01
12554	PSMC4	4.692264e-01
12555	PSMC5	1
12556	PSMC6	1
12557	PSMD1	8.250065e-01
12558	PSMD10	6.949281e-01
12559	PSMD11	1.055095e-01
12560	PSMD12	3.309060e-01
12561	PSMD13	7.622572e-01
12562	PSMD14	3.270532e-01
12563	PSMD2	9.839391e-01
12564	PSMD3	5.499363e-01
12565	PSMD4	1
12566	PSMD5	1
12567	PSMD6	8.760381e-01
12568	PSMD7	3.203136e-01
12569	PSMD8	4.183289e-01
12570	PSMD9	1
12571	PSME1	5.429659e-01
12572	PSME2	7.512449e-01
12573	PSME3	1
12574	PSME4	9.998298e-01
12575	PSMF1	3.072558e-01
Done

Running MutSig 2:
Scatter job 139: processing genes 12486 - 12575
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRUNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
Cons ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
KS ci ratio: 1.065239e-02	ci left: 9.261656e-01	ci right 9.361814e-01	k: 9313	n:10000
PRUNE2   10000 perm   3 sec   (3226 perm/sec)   p_kst 9.313000e-01   p_cons 1.878000e-01   p_joint 6.424000e-01

Outputting figure to mutsig2_images.part000000000139/PRUNE2.26_9343_10000_0.9313_0.1878_0.6424.png
                gene_name: PRUNE2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
PSG6
Processing conservation and coverage...
Processing mutations... 
Skipping 8 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
Cons ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
PSG6   10000 perm   2 sec   (5414 perm/sec)   p_kst 8.770000e-01   p_cons 2.622000e-01   p_joint 6.740000e-01

Outputting figure to mutsig2_images.part000000000139/PSG6.9_1371_10000_0.877_0.2622_0.674.png
                gene_name: PSG6
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 4 percent done.
PSG8
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
Cons ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
KS ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
PSG8   10000 perm   2 sec   (5174 perm/sec)   p_kst 7.146000e-01   p_cons 3.947000e-01   p_joint 7.451000e-01

Outputting figure to mutsig2_images.part000000000139/PSG8.10_1322_10000_0.7146_0.3947_0.7451.png
                gene_name: PSG8
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 6 percent done.
PSG7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
Cons ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
KS ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
PSG7   10000 perm   2 sec   (5037 perm/sec)   p_kst 7.768000e-01   p_cons 4.263000e-01   p_joint 7.971000e-01

Outputting figure to mutsig2_images.part000000000139/PSG7.12_1284_10000_0.7768_0.4263_0.7971.png
                gene_name: PSG7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 9 percent done.
PSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
PSG3   10000 perm   2 sec   (5369 perm/sec)   p_kst 4.775000e-01   p_cons 6.120000e-02   p_joint 9.140000e-02

Joint ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
Cons ci ratio: 1.079513e-01	ci left: 5.850174e-02	ci right 6.522634e-02	k: 1236	n:20000
KS ci ratio: 2.838129e-02	ci left: 4.811996e-01	ci right 4.951039e-01	k: 9763	n:20000
PSG3   20000 perm   4 sec   (4823 perm/sec)   p_kst 4.881500e-01   p_cons 6.180000e-02   p_joint 2.240500e-01

Joint ci ratio: 5.529150e-02	ci left: 1.395179e-01	ci right 1.474846e-01	k: 4304	n:30000
Cons ci ratio: 8.795320e-02	ci left: 5.936226e-02	ci right 6.485626e-02	k: 1862	n:30000
KS ci ratio: 2.332038e-02	ci left: 4.793296e-01	ci right 4.906733e-01	k: 14550	n:30000
PSG3   30000 perm   7 sec   (4577 perm/sec)   p_kst 4.850000e-01   p_cons 6.206667e-02   p_joint 1.434667e-01

Outputting figure to mutsig2_images.part000000000139/PSG3.10_1311_30000_0.485_0.062067_0.14347.png
                gene_name: PSG3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
PSKH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
Cons ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
PSKH2   10000 perm   2 sec   (5754 perm/sec)   p_kst 3.302000e-01   p_cons 5.606000e-01   p_joint 4.826000e-01

Outputting figure to mutsig2_images.part000000000139/PSKH2.9_1168_10000_0.3302_0.5606_0.4826.png
                gene_name: PSKH2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 13 percent done.
PSME4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
Cons ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
KS ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
PSME4   10000 perm   2 sec   (4476 perm/sec)   p_kst 2.242000e-01   p_cons 6.915000e-01   p_joint 3.902000e-01

Outputting figure to mutsig2_images.part000000000139/PSME4.9_5716_10000_0.2242_0.6915_0.3902.png
                gene_name: PSME4
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 15 percent done.
PSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
Cons ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
KS ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
PSG2   10000 perm   2 sec   (5577 perm/sec)   p_kst 4.200000e-03   p_cons 8.560000e-01   p_joint 1.150000e-02

Joint ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
Cons ci ratio: 1.136039e-02	ci left: 8.512603e-01	ci right 8.610359e-01	k: 17124	n:20000
KS ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
PSG2   20000 perm   4 sec   (5031 perm/sec)   p_kst 4.000000e-03   p_cons 8.562000e-01   p_joint 1.720000e-02

Joint ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
Cons ci ratio: 9.333172e-03	ci left: 8.506275e-01	ci right 8.586370e-01	k: 25640	n:30000
KS ci ratio: 3.782780e-01	ci left: 2.893683e-03	ci right 4.271882e-03	k: 106	n:30000
PSG2   30000 perm   6 sec   (4858 perm/sec)   p_kst 3.533333e-03   p_cons 8.546667e-01   p_joint 1.123333e-02

Joint ci ratio: 1.624375e-01	ci left: 1.318338e-02	ci right 1.553790e-02	k: 573	n:40000
Cons ci ratio: 8.121401e-03	ci left: 8.499713e-01	ci right 8.569273e-01	k: 34139	n:40000
KS ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
PSG2   40000 perm   8 sec   (4732 perm/sec)   p_kst 3.275000e-03   p_cons 8.534750e-01   p_joint 1.432500e-02

Joint ci ratio: 1.192902e-01	ci left: 1.987756e-02	ci right 2.241846e-02	k: 1056	n:50000
Cons ci ratio: 7.292824e-03	ci left: 8.493412e-01	ci right 8.555778e-01	k: 42624	n:50000
KS ci ratio: 3.010254e-01	ci left: 2.871793e-03	ci right 3.907189e-03	k: 168	n:50000
PSG2   50000 perm   11 sec   (4628 perm/sec)   p_kst 3.360000e-03   p_cons 8.524800e-01   p_joint 2.112000e-02

Joint ci ratio: 1.358686e-01	ci left: 1.275291e-02	ci right 1.462789e-02	k: 820	n:60000
Cons ci ratio: 6.380461e-03	ci left: 8.600715e-01	ci right 8.655933e-01	k: 51771	n:60000
KS ci ratio: 2.788273e-01	ci left: 2.825927e-03	ci right 3.756477e-03	k: 196	n:60000
PSG2   60000 perm   13 sec   (4544 perm/sec)   p_kst 3.266667e-03   p_cons 8.628500e-01   p_joint 1.366667e-02

Joint ci ratio: 1.023049e-01	ci left: 1.949089e-02	ci right 2.160626e-02	k: 1437	n:70000
Cons ci ratio: 6.179469e-03	ci left: 8.491750e-01	ci right 8.544529e-01	k: 59628	n:70000
KS ci ratio: 2.536617e-01	ci left: 2.968953e-03	ci right 3.844438e-03	k: 237	n:70000
PSG2   70000 perm   16 sec   (4469 perm/sec)   p_kst 3.385714e-03   p_cons 8.518286e-01   p_joint 2.052857e-02

Joint ci ratio: 1.030611e-01	ci left: 1.684629e-02	ci right 1.868892e-02	k: 1420	n:80000
Cons ci ratio: 5.774707e-03	ci left: 8.495958e-01	ci right 8.545286e-01	k: 68166	n:80000
KS ci ratio: 2.372790e-01	ci left: 2.996721e-03	ci right 3.814945e-03	k: 271	n:80000
PSG2   80000 perm   18 sec   (4395 perm/sec)   p_kst 3.387500e-03   p_cons 8.520750e-01   p_joint 1.775000e-02

Joint ci ratio: 1.060048e-01	ci left: 1.417269e-02	ci right 1.576990e-02	k: 1346	n:90000
Cons ci ratio: 5.443897e-03	ci left: 8.497638e-01	ci right 8.544135e-01	k: 76689	n:90000
KS ci ratio: 2.263213e-01	ci left: 2.946329e-03	ci right 3.708460e-03	k: 298	n:90000
PSG2   90000 perm   21 sec   (4322 perm/sec)   p_kst 3.311111e-03   p_cons 8.521000e-01   p_joint 1.495556e-02

Joint ci ratio: 1.034692e-01	ci left: 1.341734e-02	ci right 1.489104e-02	k: 1414	n:100000
Cons ci ratio: 5.149971e-03	ci left: 8.505989e-01	ci right 8.550006e-01	k: 85281	n:100000
KS ci ratio: 2.184405e-01	ci left: 2.859430e-03	ci right 3.569868e-03	k: 320	n:100000
PSG2   100000 perm   24 sec   (4252 perm/sec)   p_kst 3.200000e-03   p_cons 8.528100e-01   p_joint 1.414000e-02

Joint ci ratio: 1.284152e-01	ci left: 7.860310e-03	ci right 8.947667e-03	k: 923	n:110000
Cons ci ratio: 4.928616e-03	ci left: 8.497597e-01	ci right 8.539672e-01	k: 93706	n:110000
KS ci ratio: 2.094987e-01	ci left: 2.840388e-03	ci right 3.513501e-03	k: 348	n:110000
PSG2   110000 perm   27 sec   (4109 perm/sec)   p_kst 3.163636e-03   p_cons 8.518727e-01   p_joint 8.390909e-03

Joint ci ratio: 1.088521e-01	ci left: 1.010934e-02	ci right 1.128115e-02	k: 1282	n:120000
Cons ci ratio: 4.722171e-03	ci left: 8.496681e-01	ci right 8.536982e-01	k: 102203	n:120000
KS ci ratio: 1.997205e-01	ci left: 2.880425e-03	ci right 3.527286e-03	k: 383	n:120000
PSG2   120000 perm   30 sec   (4047 perm/sec)   p_kst 3.191667e-03   p_cons 8.516917e-01   p_joint 1.068333e-02

Joint ci ratio: 1.091554e-01	ci left: 9.286589e-03	ci right 1.036621e-02	k: 1276	n:130000
Cons ci ratio: 4.537038e-03	ci left: 8.497409e-01	ci right 8.536126e-01	k: 110719	n:130000
KS ci ratio: 1.935256e-01	ci left: 2.841690e-03	ci right 3.457726e-03	k: 408	n:130000
PSG2   130000 perm   33 sec   (3986 perm/sec)   p_kst 3.138462e-03   p_cons 8.516846e-01   p_joint 9.815385e-03

Joint ci ratio: 1.127216e-01	ci left: 8.081288e-03	ci right 9.053516e-03	k: 1198	n:140000
Cons ci ratio: 4.368144e-03	ci left: 8.500357e-01	ci right 8.537640e-01	k: 119267	n:140000
KS ci ratio: 1.870110e-01	ci left: 2.835989e-03	ci right 3.427744e-03	k: 437	n:140000
PSG2   140000 perm   36 sec   (3927 perm/sec)   p_kst 3.121429e-03   p_cons 8.519071e-01   p_joint 8.557143e-03

Joint ci ratio: 1.200894e-01	ci left: 6.629574e-03	ci right 7.482981e-03	k: 1057	n:150000
Cons ci ratio: 4.219365e-03	ci left: 8.501392e-01	ci right 8.537405e-01	k: 127792	n:150000
KS ci ratio: 1.760779e-01	ci left: 3.003326e-03	ci right 3.589466e-03	k: 493	n:150000
PSG2   150000 perm   39 sec   (3868 perm/sec)   p_kst 3.286667e-03   p_cons 8.519467e-01   p_joint 7.046667e-03

Joint ci ratio: 1.176237e-01	ci left: 6.488085e-03	ci right 7.304937e-03	k: 1102	n:160000
Cons ci ratio: 4.081986e-03	ci left: 8.504075e-01	ci right 8.538922e-01	k: 136345	n:160000
KS ci ratio: 1.701523e-01	ci left: 3.024895e-03	ci right 3.593339e-03	k: 528	n:160000
PSG2   160000 perm   42 sec   (3807 perm/sec)   p_kst 3.300000e-03   p_cons 8.521562e-01   p_joint 6.887500e-03

Joint ci ratio: 1.165885e-01	ci left: 6.220583e-03	ci right 6.996387e-03	k: 1122	n:170000
Cons ci ratio: 3.956182e-03	ci left: 8.507108e-01	ci right 8.540889e-01	k: 144909	n:170000
KS ci ratio: 1.649340e-01	ci left: 3.038576e-03	ci right 3.590341e-03	k: 562	n:170000
PSG2   170000 perm   45 sec   (3748 perm/sec)   p_kst 3.305882e-03   p_cons 8.524059e-01   p_joint 6.600000e-03

Joint ci ratio: 1.032852e-01	ci left: 7.528660e-03	ci right 8.353973e-03	k: 1428	n:180000
Cons ci ratio: 3.845655e-03	ci left: 8.506971e-01	ci right 8.539804e-01	k: 153422	n:180000
KS ci ratio: 1.598997e-01	ci left: 3.061641e-03	ci right 3.598996e-03	k: 598	n:180000
PSG2   180000 perm   49 sec   (3693 perm/sec)   p_kst 3.322222e-03   p_cons 8.523444e-01   p_joint 7.933333e-03

Joint ci ratio: 1.014977e-01	ci left: 7.393935e-03	ci right 8.189614e-03	k: 1479	n:190000
Cons ci ratio: 3.747422e-03	ci left: 8.504482e-01	ci right 8.536463e-01	k: 161890	n:190000
KS ci ratio: 1.555458e-01	ci left: 3.072389e-03	ci right 3.595577e-03	k: 632	n:190000
PSG2   190000 perm   52 sec   (3638 perm/sec)   p_kst 3.326316e-03   p_cons 8.520526e-01   p_joint 7.784211e-03

Joint ci ratio: 1.027487e-01	ci left: 6.853610e-03	ci right 7.600780e-03	k: 1444	n:200000
Cons ci ratio: 3.653369e-03	ci left: 8.504311e-01	ci right 8.535487e-01	k: 170399	n:200000
KS ci ratio: 1.508501e-01	ci left: 3.111108e-03	ci right 3.623453e-03	k: 672	n:200000
PSG2   200000 perm   56 sec   (3586 perm/sec)   p_kst 3.360000e-03   p_cons 8.519950e-01   p_joint 7.220000e-03

Joint ci ratio: 1.005482e-01	ci left: 6.824256e-03	ci right 7.551351e-03	k: 1508	n:210000
Cons ci ratio: 3.562491e-03	ci left: 8.506701e-01	ci right 8.537107e-01	k: 178961	n:210000
KS ci ratio: 1.472826e-01	ci left: 3.114243e-03	ci right 3.613907e-03	k: 705	n:210000
PSG2   210000 perm   59 sec   (3536 perm/sec)   p_kst 3.357143e-03   p_cons 8.521952e-01   p_joint 7.180952e-03

Joint ci ratio: 9.758135e-02	ci left: 6.926335e-03	ci right 7.641285e-03	k: 1601	n:220000
Cons ci ratio: 3.478067e-03	ci left: 8.508881e-01	ci right 8.538572e-01	k: 187523	n:220000
KS ci ratio: 1.437618e-01	ci left: 3.125986e-03	ci right 3.614516e-03	k: 740	n:220000
PSG2   220000 perm   64 sec   (3433 perm/sec)   p_kst 3.363636e-03   p_cons 8.523773e-01   p_joint 7.277273e-03

Joint ci ratio: 8.566593e-02	ci left: 8.635085e-03	ci right 9.412146e-03	k: 2074	n:230000
Cons ci ratio: 3.399134e-03	ci left: 8.511053e-01	ci right 8.540075e-01	k: 196089	n:230000
KS ci ratio: 1.400300e-01	ci left: 3.157817e-03	ci right 3.637442e-03	k: 780	n:230000
PSG2   230000 perm   68 sec   (3374 perm/sec)   p_kst 3.391304e-03   p_cons 8.525609e-01   p_joint 9.017391e-03

Joint ci ratio: 7.417190e-02	ci left: 1.107726e-02	ci right 1.193459e-02	k: 2760	n:240000
Cons ci ratio: 3.324620e-03	ci left: 8.513594e-01	ci right 8.541987e-01	k: 204668	n:240000
KS ci ratio: 1.355838e-01	ci left: 3.235447e-03	ci right 3.710002e-03	k: 832	n:240000
PSG2   240000 perm   72 sec   (3333 perm/sec)   p_kst 3.466667e-03   p_cons 8.527833e-01   p_joint 1.150000e-02

Joint ci ratio: 7.484985e-02	ci left: 1.044562e-02	ci right 1.126178e-02	k: 2712	n:250000
Cons ci ratio: 3.256972e-03	ci left: 8.514251e-01	ci right 8.542067e-01	k: 213205	n:250000
KS ci ratio: 1.337530e-01	ci left: 3.194925e-03	ci right 3.656705e-03	k: 855	n:250000
PSG2   250000 perm   76 sec   (3287 perm/sec)   p_kst 3.420000e-03   p_cons 8.528200e-01   p_joint 1.084800e-02

Joint ci ratio: 7.632910e-02	ci left: 9.658826e-03	ci right 1.042908e-02	k: 2610	n:260000
Cons ci ratio: 3.191923e-03	ci left: 8.515944e-01	ci right 8.543208e-01	k: 221770	n:260000
KS ci ratio: 1.310995e-01	ci left: 3.202200e-03	ci right 3.655134e-03	k: 890	n:260000
PSG2   260000 perm   80 sec   (3250 perm/sec)   p_kst 3.423077e-03   p_cons 8.529615e-01   p_joint 1.003846e-02

Joint ci ratio: 7.610832e-02	ci left: 9.359167e-03	ci right 1.010327e-02	k: 2626	n:270000
Cons ci ratio: 3.133115e-03	ci left: 8.515509e-01	ci right 8.542267e-01	k: 230281	n:270000
KS ci ratio: 1.286676e-01	ci left: 3.205435e-03	ci right 3.649774e-03	k: 924	n:270000
PSG2   270000 perm   84 sec   (3213 perm/sec)   p_kst 3.422222e-03   p_cons 8.528926e-01   p_joint 9.725926e-03

Joint ci ratio: 7.721205e-02	ci left: 8.769091e-03	ci right 9.476839e-03	k: 2553	n:280000
Cons ci ratio: 3.076567e-03	ci left: 8.515826e-01	ci right 8.542101e-01	k: 238812	n:280000
KS ci ratio: 1.264324e-01	ci left: 3.205052e-03	ci right 3.641041e-03	k: 957	n:280000
PSG2   280000 perm   88 sec   (3172 perm/sec)   p_kst 3.417857e-03   p_cons 8.529000e-01   p_joint 9.117857e-03

Joint ci ratio: 7.584330e-02	ci left: 8.781263e-03	ci right 9.476875e-03	k: 2646	n:290000
Cons ci ratio: 3.024095e-03	ci left: 8.515191e-01	ci right 8.541015e-01	k: 247316	n:290000
KS ci ratio: 1.242469e-01	ci left: 3.208098e-03	ci right 3.636403e-03	k: 991	n:290000
PSG2   290000 perm   92 sec   (3137 perm/sec)   p_kst 3.417241e-03   p_cons 8.528138e-01   p_joint 9.124138e-03

Joint ci ratio: 7.502999e-02	ci left: 8.678223e-03	ci right 9.357979e-03	k: 2704	n:300000
Cons ci ratio: 2.972679e-03	ci left: 8.515906e-01	ci right 8.541292e-01	k: 255859	n:300000
KS ci ratio: 1.215190e-01	ci left: 3.246555e-03	ci right 3.669793e-03	k: 1036	n:300000
PSG2   300000 perm   97 sec   (3104 perm/sec)   p_kst 3.453333e-03   p_cons 8.528633e-01   p_joint 9.013333e-03

Joint ci ratio: 7.387885e-02	ci left: 8.667367e-03	ci right 9.335408e-03	k: 2789	n:310000
Cons ci ratio: 2.923724e-03	ci left: 8.516644e-01	ci right 8.541613e-01	k: 264404	n:310000
KS ci ratio: 1.194628e-01	ci left: 3.254457e-03	ci right 3.671039e-03	k: 1072	n:310000
PSG2   310000 perm   101 sec   (3071 perm/sec)   p_kst 3.458065e-03   p_cons 8.529161e-01   p_joint 8.996774e-03

Joint ci ratio: 7.513541e-02	ci left: 8.117349e-03	ci right 8.754102e-03	k: 2698	n:320000
Cons ci ratio: 2.875067e-03	ci left: 8.519126e-01	ci right 8.543685e-01	k: 273006	n:320000
KS ci ratio: 1.179352e-01	ci left: 3.237656e-03	ci right 3.646418e-03	k: 1100	n:320000
PSG2   320000 perm   105 sec   (3039 perm/sec)   p_kst 3.437500e-03   p_cons 8.531437e-01   p_joint 8.431250e-03

Joint ci ratio: 7.013082e-02	ci left: 9.049743e-03	ci right 9.710430e-03	k: 3094	n:330000
Cons ci ratio: 2.832041e-03	ci left: 8.518541e-01	ci right 8.542730e-01	k: 281512	n:330000
KS ci ratio: 1.159505e-01	ci left: 3.251329e-03	ci right 3.654438e-03	k: 1138	n:330000
PSG2   330000 perm   110 sec   (3007 perm/sec)   p_kst 3.448485e-03   p_cons 8.530667e-01   p_joint 9.375758e-03

Joint ci ratio: 7.038195e-02	ci left: 8.722843e-03	ci right 9.362037e-03	k: 3073	n:340000
Cons ci ratio: 2.790268e-03	ci left: 8.518554e-01	ci right 8.542386e-01	k: 290037	n:340000
KS ci ratio: 1.143067e-01	ci left: 3.249966e-03	ci right 3.646807e-03	k: 1171	n:340000
PSG2   340000 perm   114 sec   (2974 perm/sec)   p_kst 3.444118e-03   p_cons 8.530500e-01   p_joint 9.038235e-03

Joint ci ratio: 6.788475e-02	ci left: 9.116658e-03	ci right 9.760075e-03	k: 3302	n:350000
Cons ci ratio: 2.749569e-03	ci left: 8.519228e-01	ci right 8.542713e-01	k: 298585	n:350000
KS ci ratio: 1.127779e-01	ci left: 3.245941e-03	ci right 3.636637e-03	k: 1203	n:350000
PSG2   350000 perm   119 sec   (2941 perm/sec)   p_kst 3.437143e-03   p_cons 8.531000e-01   p_joint 9.434286e-03

Joint ci ratio: 6.862083e-02	ci left: 8.674954e-03	ci right 9.294099e-03	k: 3233	n:360000
Cons ci ratio: 2.710751e-03	ci left: 8.519728e-01	ci right 8.542882e-01	k: 307128	n:360000
KS ci ratio: 1.108151e-01	ci left: 3.271883e-03	ci right 3.658400e-03	k: 1246	n:360000
PSG2   360000 perm   124 sec   (2910 perm/sec)   p_kst 3.461111e-03   p_cons 8.531333e-01   p_joint 8.980556e-03

Joint ci ratio: 6.806877e-02	ci left: 8.581277e-03	ci right 9.188614e-03	k: 3286	n:370000
Cons ci ratio: 2.673156e-03	ci left: 8.520555e-01	ci right 8.543389e-01	k: 315684	n:370000
KS ci ratio: 1.097221e-01	ci left: 3.249155e-03	ci right 3.628957e-03	k: 1271	n:370000
PSG2   370000 perm   128 sec   (2880 perm/sec)   p_kst 3.435135e-03   p_cons 8.532000e-01   p_joint 8.881081e-03

Joint ci ratio: 6.721577e-02	ci left: 8.572766e-03	ci right 9.171601e-03	k: 3370	n:380000
Cons ci ratio: 2.636723e-03	ci left: 8.521684e-01	ci right 8.544209e-01	k: 324253	n:380000
KS ci ratio: 1.081185e-01	ci left: 3.260928e-03	ci right 3.636180e-03	k: 1309	n:380000
PSG2   380000 perm   133 sec   (2849 perm/sec)   p_kst 3.444737e-03   p_cons 8.532974e-01   p_joint 8.868421e-03

Joint ci ratio: 6.487658e-02	ci left: 8.973365e-03	ci right 9.577549e-03	k: 3616	n:390000
Cons ci ratio: 2.601979e-03	ci left: 8.522526e-01	ci right 8.544755e-01	k: 332813	n:390000
KS ci ratio: 1.065832e-01	ci left: 3.272135e-03	ci right 3.642995e-03	k: 1347	n:390000
PSG2   390000 perm   138 sec   (2817 perm/sec)   p_kst 3.453846e-03   p_cons 8.533667e-01   p_joint 9.271795e-03

Joint ci ratio: 6.542480e-02	ci left: 8.603880e-03	ci right 9.188267e-03	k: 3557	n:400000
Cons ci ratio: 2.568392e-03	ci left: 8.523502e-01	ci right 8.545447e-01	k: 341380	n:400000
KS ci ratio: 1.051877e-01	ci left: 3.277949e-03	ci right 3.644302e-03	k: 1383	n:400000
PSG2   400000 perm   144 sec   (2787 perm/sec)   p_kst 3.457500e-03   p_cons 8.534500e-01   p_joint 8.892500e-03

Joint ci ratio: 6.510055e-02	ci left: 8.480384e-03	ci right 9.053420e-03	k: 3593	n:410000
Cons ci ratio: 2.537879e-03	ci left: 8.522647e-01	ci right 8.544328e-01	k: 349874	n:410000
KS ci ratio: 1.039927e-01	ci left: 3.274006e-03	ci right 3.635507e-03	k: 1415	n:410000
PSG2   410000 perm   149 sec   (2760 perm/sec)   p_kst 3.451220e-03   p_cons 8.533512e-01   p_joint 8.763415e-03

Joint ci ratio: 6.428265e-02	ci left: 8.493976e-03	ci right 9.060451e-03	k: 3685	n:420000
Cons ci ratio: 2.505611e-03	ci left: 8.524652e-01	ci right 8.546061e-01	k: 358486	n:420000
KS ci ratio: 1.029803e-01	ci left: 3.260993e-03	ci right 3.617340e-03	k: 1443	n:420000
PSG2   420000 perm   154 sec   (2733 perm/sec)   p_kst 3.435714e-03   p_cons 8.535381e-01   p_joint 8.773810e-03

Joint ci ratio: 6.505920e-02	ci left: 8.099623e-03	ci right 8.646568e-03	k: 3599	n:430000
Cons ci ratio: 2.477258e-03	ci left: 8.523812e-01	ci right 8.544977e-01	k: 366980	n:430000
KS ci ratio: 1.017199e-01	ci left: 3.266734e-03	ci right 3.619079e-03	k: 1479	n:430000
PSG2   430000 perm   159 sec   (2705 perm/sec)   p_kst 3.439535e-03   p_cons 8.534419e-01   p_joint 8.369767e-03

Joint ci ratio: 6.476681e-02	ci left: 7.989308e-03	ci right 8.526288e-03	k: 3632	n:440000
Cons ci ratio: 2.447241e-03	ci left: 8.525680e-01	ci right 8.546592e-01	k: 375591	n:440000
KS ci ratio: 1.007719e-01	ci left: 3.254514e-03	ci right 3.602075e-03	k: 1507	n:440000
PSG2   440000 perm   164 sec   (2679 perm/sec)   p_kst 3.425000e-03   p_cons 8.536159e-01   p_joint 8.254545e-03

Joint ci ratio: 6.421386e-02	ci left: 7.949505e-03	ci right 8.479078e-03	k: 3695	n:450000
Cons ci ratio: 2.419749e-03	ci left: 8.525950e-01	ci right 8.546627e-01	k: 384134	n:450000
KS ci ratio: 9.958997e-02	ci left: 3.260188e-03	ci right 3.604033e-03	k: 1543	n:450000
PSG2   450000 perm   170 sec   (2654 perm/sec)   p_kst 3.428889e-03   p_cons 8.536311e-01   p_joint 8.211111e-03

Outputting figure to mutsig2_images.part000000000139/PSG2.8_1028_450000_0.0034289_0.85363_0.0082111.png
                gene_name: PSG2
               theta_stop: 0.100 
                    nperm: 450000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0033 
       ci_ks_bounds_right: 0.0036 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0079 
    ci_joint_bounds_right: 0.0085 

Current progress: 17 percent done.
PSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
Cons ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
KS ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
PSG4   10000 perm   2 sec   (5308 perm/sec)   p_kst 2.604000e-01   p_cons 2.469000e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000139/PSG4.8_1284_10000_0.2604_0.2469_0.2621.png
                gene_name: PSG4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
PSG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
Cons ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
KS ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
PSG9   10000 perm   2 sec   (5792 perm/sec)   p_kst 5.990000e-02   p_cons 4.787000e-01   p_joint 1.123000e-01

Joint ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
Cons ci ratio: 2.900171e-02	ci left: 4.704063e-01	ci right 4.843003e-01	k: 9547	n:20000
KS ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
PSG9   20000 perm   4 sec   (5137 perm/sec)   p_kst 6.070000e-02   p_cons 4.773500e-01   p_joint 9.755000e-02

Joint ci ratio: 6.959649e-02	ci left: 9.229527e-02	ci right 9.898328e-02	k: 2868	n:30000
Cons ci ratio: 2.364960e-02	ci left: 4.723332e-01	ci right 4.836710e-01	k: 14340	n:30000
KS ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
PSG9   30000 perm   6 sec   (4903 perm/sec)   p_kst 6.050000e-02   p_cons 4.780000e-01   p_joint 9.560000e-02

Outputting figure to mutsig2_images.part000000000139/PSG9.8_1305_30000_0.0605_0.478_0.0956.png
                gene_name: PSG9
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 21 percent done.
PRSS55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
KS ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
PRSS55   10000 perm   2 sec   (5310 perm/sec)   p_kst 7.505000e-01   p_cons 8.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS55.7_1079_10000_0.7505_0.8742_1.png
                gene_name: PRSS55
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
PSD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
Cons ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
PSD3   10000 perm   2 sec   (4782 perm/sec)   p_kst 8.226000e-01   p_cons 2.842000e-01   p_joint 6.754000e-01

Outputting figure to mutsig2_images.part000000000139/PSD3.7_3244_10000_0.8226_0.2842_0.6754.png
                gene_name: PSD3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 26 percent done.
PSG11
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
Cons ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
KS ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
PSG11   10000 perm   2 sec   (5752 perm/sec)   p_kst 1.150000e-01   p_cons 7.111000e-01   p_joint 2.140000e-01

Joint ci ratio: 4.699444e-02	ci left: 2.519963e-01	ci right 2.641741e-01	k: 5161	n:20000
Cons ci ratio: 1.769736e-02	ci left: 7.040586e-01	ci right 7.166802e-01	k: 14208	n:20000
KS ci ratio: 7.710129e-02	ci left: 1.100200e-01	ci right 1.188924e-01	k: 2288	n:20000
PSG11   20000 perm   4 sec   (5156 perm/sec)   p_kst 1.144000e-01   p_cons 7.104000e-01   p_joint 2.580500e-01

Outputting figure to mutsig2_images.part000000000139/PSG11.5_1028_20000_0.1144_0.7104_0.25805.png
                gene_name: PSG11
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 28 percent done.
PSG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
Cons ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
PSG5   10000 perm   2 sec   (5682 perm/sec)   p_kst 4.237000e-01   p_cons 8.864000e-01   p_joint 5.055000e-01

Outputting figure to mutsig2_images.part000000000139/PSG5.6_1028_10000_0.4237_0.8864_0.5055.png
                gene_name: PSG5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 30 percent done.
PRTG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
Cons ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
KS ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
PRTG   10000 perm   2 sec   (4871 perm/sec)   p_kst 5.472000e-01   p_cons 2.519000e-01   p_joint 6.532000e-01

Outputting figure to mutsig2_images.part000000000139/PRTG.5_3533_10000_0.5472_0.2519_0.6532.png
                gene_name: PRTG
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 32 percent done.
PRUNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
KS ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
PRUNE   10000 perm   2 sec   (5855 perm/sec)   p_kst 4.002000e-01   p_cons 1.193000e-01   p_joint 2.280000e-01

Joint ci ratio: 5.666099e-02	ci left: 1.875999e-01	ci right 1.985895e-01	k: 3861	n:20000
Cons ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
KS ci ratio: 3.394141e-02	ci left: 3.932503e-01	ci right 4.068788e-01	k: 8001	n:20000
PRUNE   20000 perm   4 sec   (5239 perm/sec)   p_kst 4.000500e-01   p_cons 1.234000e-01   p_joint 1.930500e-01

Outputting figure to mutsig2_images.part000000000139/PRUNE.5_1394_20000_0.40005_0.1234_0.19305.png
                gene_name: PRUNE
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 34 percent done.
PSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
PSD2   10000 perm   2 sec   (5499 perm/sec)   p_kst 1.787000e-01   p_cons 4.550000e-02   p_joint 1.461000e-01

Joint ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
Cons ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
KS ci ratio: 5.944311e-02	ci left: 1.732643e-01	ci right 1.839293e-01	k: 3571	n:20000
PSD2   20000 perm   4 sec   (4953 perm/sec)   p_kst 1.785500e-01   p_cons 4.625000e-02   p_joint 8.965000e-02

Joint ci ratio: 7.517613e-02	ci left: 7.996750e-02	ci right 8.624685e-02	k: 2492	n:30000
Cons ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
KS ci ratio: 4.865144e-02	ci left: 1.735542e-01	ci right 1.822416e-01	k: 5336	n:30000
PSD2   30000 perm   6 sec   (4750 perm/sec)   p_kst 1.778667e-01   p_cons 4.493333e-02   p_joint 8.306667e-02

Joint ci ratio: 5.942034e-02	ci left: 9.520179e-02	ci right 1.010567e-01	k: 3924	n:40000
Cons ci ratio: 9.237989e-02	ci left: 4.108167e-02	ci right 4.508501e-02	k: 1722	n:40000
KS ci ratio: 4.209032e-02	ci left: 1.744360e-01	ci right 1.819608e-01	k: 7127	n:40000
PSD2   40000 perm   9 sec   (4609 perm/sec)   p_kst 1.781750e-01   p_cons 4.305000e-02   p_joint 9.810000e-02

Outputting figure to mutsig2_images.part000000000139/PSD2.5_2372_40000_0.17818_0.04305_0.0981.png
                gene_name: PSD2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 36 percent done.
PSMD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
PSMD11   10000 perm   2 sec   (5943 perm/sec)   p_kst 9.246000e-01   p_cons 8.218000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMD11.5_1321_10000_0.9246_0.8218_1.png
                gene_name: PSMD11
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
PRSS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
Cons ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
PRSS36   10000 perm   2 sec   (5690 perm/sec)   p_kst 1.020000e-02   p_cons 4.210000e-02   p_joint 1.440000e-02

Joint ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
Cons ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
PRSS36   20000 perm   4 sec   (5114 perm/sec)   p_kst 8.850000e-03   p_cons 4.120000e-02   p_joint 6.400000e-03

Joint ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
Cons ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
KS ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
PRSS36   30000 perm   6 sec   (4878 perm/sec)   p_kst 8.500000e-03   p_cons 4.133333e-02   p_joint 4.466667e-03

Joint ci ratio: 3.249437e-01	ci left: 3.036855e-03	ci right 4.236984e-03	k: 144	n:40000
Cons ci ratio: 9.491206e-02	ci left: 3.895552e-02	ci right 4.286148e-02	k: 1635	n:40000
KS ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
PRSS36   40000 perm   8 sec   (4731 perm/sec)   p_kst 8.500000e-03   p_cons 4.087500e-02   p_joint 3.600000e-03

Joint ci ratio: 3.010254e-01	ci left: 2.871793e-03	ci right 3.907189e-03	k: 168	n:50000
Cons ci ratio: 8.465501e-02	ci left: 3.937660e-02	ci right 4.287693e-02	k: 2055	n:50000
KS ci ratio: 1.913907e-01	ci left: 7.523421e-03	ci right 9.134446e-03	k: 415	n:50000
PRSS36   50000 perm   11 sec   (4625 perm/sec)   p_kst 8.300000e-03   p_cons 4.110000e-02   p_joint 3.360000e-03

Joint ci ratio: 2.138933e-01	ci left: 4.971242e-03	ci right 6.177340e-03	k: 333	n:60000
Cons ci ratio: 7.460979e-02	ci left: 4.233995e-02	ci right 4.563768e-02	k: 2638	n:60000
KS ci ratio: 1.703313e-01	ci left: 8.004350e-03	ci right 9.510411e-03	k: 524	n:60000
PRSS36   60000 perm   13 sec   (4523 perm/sec)   p_kst 8.733333e-03   p_cons 4.396667e-02   p_joint 5.550000e-03

Joint ci ratio: 1.971806e-01	ci left: 5.060625e-03	ci right 6.180955e-03	k: 392	n:70000
Cons ci ratio: 6.906163e-02	ci left: 4.247840e-02	ci right 4.553097e-02	k: 3079	n:70000
KS ci ratio: 1.578915e-01	ci left: 8.039051e-03	ci right 9.430702e-03	k: 610	n:70000
PRSS36   70000 perm   16 sec   (4430 perm/sec)   p_kst 8.714286e-03   p_cons 4.398571e-02   p_joint 5.600000e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 6.463972e-02	ci left: 4.252756e-02	ci right 4.538063e-02	k: 3515	n:80000
KS ci ratio: 1.476179e-01	ci left: 8.092174e-03	ci right 9.393827e-03	k: 698	n:80000
PRSS36   80000 perm   18 sec   (4342 perm/sec)   p_kst 8.725000e-03   p_cons 4.393750e-02   p_joint 4.925000e-03

Joint ci ratio: 1.901474e-01	ci left: 4.253045e-03	ci right 5.157112e-03	k: 422	n:90000
Cons ci ratio: 6.099539e-02	ci left: 4.253784e-02	ci right 4.522499e-02	k: 3948	n:90000
KS ci ratio: 1.392985e-01	ci left: 8.114327e-03	ci right 9.339876e-03	k: 784	n:90000
PRSS36   90000 perm   21 sec   (4258 perm/sec)   p_kst 8.711111e-03   p_cons 4.386667e-02   p_joint 4.688889e-03

Joint ci ratio: 1.920246e-01	ci left: 3.751473e-03	ci right 4.557705e-03	k: 414	n:100000
Cons ci ratio: 5.802998e-02	ci left: 4.237219e-02	ci right 4.491436e-02	k: 4363	n:100000
KS ci ratio: 1.330162e-01	ci left: 8.036991e-03	ci right 9.191782e-03	k: 860	n:100000
PRSS36   100000 perm   24 sec   (4182 perm/sec)   p_kst 8.600000e-03   p_cons 4.363000e-02   p_joint 4.140000e-03

Joint ci ratio: 1.837972e-01	ci left: 3.739636e-03	ci right 4.505054e-03	k: 452	n:110000
Cons ci ratio: 5.535597e-02	ci left: 4.239179e-02	ci right 4.481417e-02	k: 4795	n:110000
KS ci ratio: 1.260298e-01	ci left: 8.168445e-03	ci right 9.275873e-03	k: 958	n:110000
PRSS36   110000 perm   27 sec   (4111 perm/sec)   p_kst 8.709091e-03   p_cons 4.359091e-02   p_joint 4.109091e-03

Joint ci ratio: 1.844430e-01	ci left: 3.404097e-03	ci right 4.103555e-03	k: 449	n:120000
Cons ci ratio: 5.304705e-02	ci left: 4.236923e-02	ci right 4.468623e-02	k: 5222	n:120000
KS ci ratio: 1.213202e-01	ci left: 8.101467e-03	ci right 9.155820e-03	k: 1034	n:120000
PRSS36   120000 perm   30 sec   (4044 perm/sec)   p_kst 8.616667e-03   p_cons 4.351667e-02   p_joint 3.741667e-03

Joint ci ratio: 1.930527e-01	ci left: 2.856332e-03	ci right 3.473851e-03	k: 410	n:130000
Cons ci ratio: 5.096244e-02	ci left: 4.242032e-02	ci right 4.464626e-02	k: 5658	n:130000
KS ci ratio: 1.180704e-01	ci left: 7.911026e-03	ci right 8.911087e-03	k: 1092	n:130000
PRSS36   130000 perm   33 sec   (3977 perm/sec)   p_kst 8.400000e-03   p_cons 4.352308e-02   p_joint 3.153846e-03

Joint ci ratio: 1.903081e-01	ci left: 2.733892e-03	ci right 3.315565e-03	k: 422	n:140000
Cons ci ratio: 4.923254e-02	ci left: 4.225387e-02	ci right 4.439367e-02	k: 6064	n:140000
KS ci ratio: 1.139257e-01	ci left: 7.907738e-03	ci right 8.869933e-03	k: 1173	n:140000
PRSS36   140000 perm   36 sec   (3916 perm/sec)   p_kst 8.378571e-03   p_cons 4.331429e-02   p_joint 3.014286e-03

Joint ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
Cons ci ratio: 4.751433e-02	ci left: 4.237437e-02	ci right 4.444332e-02	k: 6510	n:150000
KS ci ratio: 1.101890e-01	ci left: 7.905421e-03	ci right 8.833733e-03	k: 1254	n:150000
PRSS36   150000 perm   39 sec   (3857 perm/sec)   p_kst 8.360000e-03   p_cons 4.340000e-02   p_joint 2.860000e-03

Joint ci ratio: 1.868340e-01	ci left: 2.487405e-03	ci right 3.005875e-03	k: 438	n:160000
Cons ci ratio: 4.598503e-02	ci left: 4.244386e-02	ci right 4.444773e-02	k: 6950	n:160000
KS ci ratio: 1.060002e-01	ci left: 8.025545e-03	ci right 8.929902e-03	k: 1355	n:160000
PRSS36   160000 perm   42 sec   (3797 perm/sec)   p_kst 8.468750e-03   p_cons 4.343750e-02   p_joint 2.737500e-03

Joint ci ratio: 1.745249e-01	ci left: 2.700575e-03	ci right 3.222487e-03	k: 502	n:170000
Cons ci ratio: 4.466402e-02	ci left: 4.237808e-02	ci right 4.431988e-02	k: 7368	n:170000
KS ci ratio: 1.026469e-01	ci left: 8.069062e-03	ci right 8.947823e-03	k: 1445	n:170000
PRSS36   170000 perm   45 sec   (3742 perm/sec)   p_kst 8.500000e-03   p_cons 4.334118e-02   p_joint 2.952941e-03

Joint ci ratio: 1.800043e-01	ci left: 2.391234e-03	ci right 2.869453e-03	k: 472	n:180000
Cons ci ratio: 4.338376e-02	ci left: 4.244680e-02	ci right 4.433461e-02	k: 7809	n:180000
KS ci ratio: 1.000207e-01	ci left: 8.037710e-03	ci right 8.889345e-03	k: 1522	n:180000
PRSS36   180000 perm   49 sec   (3689 perm/sec)   p_kst 8.455556e-03   p_cons 4.338333e-02   p_joint 2.622222e-03

Joint ci ratio: 1.835518e-01	ci left: 2.174931e-03	ci right 2.619416e-03	k: 454	n:190000
Cons ci ratio: 4.221565e-02	ci left: 4.249337e-02	ci right 4.433112e-02	k: 8247	n:190000
KS ci ratio: 9.780223e-02	ci left: 7.973967e-03	ci right 8.799033e-03	k: 1592	n:190000
PRSS36   190000 perm   52 sec   (3642 perm/sec)   p_kst 8.378947e-03   p_cons 4.340526e-02   p_joint 2.389474e-03

Joint ci ratio: 1.403554e-01	ci left: 3.612251e-03	ci right 4.162282e-03	k: 776	n:200000
Cons ci ratio: 4.108273e-02	ci left: 4.264481e-02	ci right 4.443845e-02	k: 8707	n:200000
KS ci ratio: 9.486599e-02	ci left: 8.063241e-03	ci right 8.871103e-03	k: 1692	n:200000
PRSS36   200000 perm   56 sec   (3598 perm/sec)   p_kst 8.460000e-03   p_cons 4.353500e-02   p_joint 3.880000e-03

Joint ci ratio: 1.395595e-01	ci left: 3.481579e-03	ci right 4.008456e-03	k: 785	n:210000
Cons ci ratio: 4.019709e-02	ci left: 4.245229e-02	ci right 4.419844e-02	k: 9097	n:210000
KS ci ratio: 9.236122e-02	ci left: 8.111775e-03	ci right 8.901882e-03	k: 1785	n:210000
PRSS36   210000 perm   59 sec   (3550 perm/sec)   p_kst 8.500000e-03   p_cons 4.331905e-02   p_joint 3.738095e-03

Joint ci ratio: 1.395715e-01	ci left: 3.323306e-03	ci right 3.826277e-03	k: 785	n:220000
Cons ci ratio: 3.929712e-02	ci left: 4.242174e-02	ci right 4.412668e-02	k: 9519	n:220000
KS ci ratio: 9.028754e-02	ci left: 8.111714e-03	ci right 8.883138e-03	k: 1868	n:220000
PRSS36   220000 perm   63 sec   (3506 perm/sec)   p_kst 8.490909e-03   p_cons 4.326818e-02   p_joint 3.568182e-03

Joint ci ratio: 1.373217e-01	ci left: 3.287938e-03	ci right 3.776879e-03	k: 811	n:230000
Cons ci ratio: 3.836837e-02	ci left: 4.257949e-02	ci right 4.424943e-02	k: 9984	n:230000
KS ci ratio: 8.787206e-02	ci left: 8.201148e-03	ci right 8.959140e-03	k: 1972	n:230000
PRSS36   230000 perm   66 sec   (3461 perm/sec)   p_kst 8.573913e-03   p_cons 4.340870e-02   p_joint 3.526087e-03

Joint ci ratio: 1.382748e-01	ci left: 3.106667e-03	ci right 3.572121e-03	k: 800	n:240000
Cons ci ratio: 3.758907e-02	ci left: 4.253458e-02	ci right 4.416814e-02	k: 10403	n:240000
KS ci ratio: 8.555750e-02	ci left: 8.299693e-03	ci right 9.045579e-03	k: 2080	n:240000
PRSS36   240000 perm   70 sec   (3417 perm/sec)   p_kst 8.666667e-03   p_cons 4.334583e-02   p_joint 3.333333e-03

Joint ci ratio: 1.365838e-01	ci left: 3.059645e-03	ci right 3.511992e-03	k: 820	n:250000
Cons ci ratio: 3.679858e-02	ci left: 4.262045e-02	ci right 4.422216e-02	k: 10854	n:250000
KS ci ratio: 8.366763e-02	ci left: 8.339672e-03	ci right 9.071786e-03	k: 2175	n:250000
PRSS36   250000 perm   74 sec   (3375 perm/sec)   p_kst 8.700000e-03   p_cons 4.341600e-02   p_joint 3.280000e-03

Joint ci ratio: 1.348729e-01	ci left: 3.019988e-03	ci right 3.460431e-03	k: 841	n:260000
Cons ci ratio: 3.610270e-02	ci left: 4.259328e-02	ci right 4.416307e-02	k: 11277	n:260000
KS ci ratio: 8.197055e-02	ci left: 8.361670e-03	ci right 9.080115e-03	k: 2266	n:260000
PRSS36   260000 perm   78 sec   (3333 perm/sec)   p_kst 8.715385e-03   p_cons 4.337308e-02   p_joint 3.234615e-03

Joint ci ratio: 1.360201e-01	ci left: 2.858026e-03	ci right 3.278679e-03	k: 827	n:270000
Cons ci ratio: 3.541956e-02	ci left: 4.262715e-02	ci right 4.416786e-02	k: 11716	n:270000
KS ci ratio: 8.028689e-02	ci left: 8.400327e-03	ci right 9.106575e-03	k: 2362	n:270000
PRSS36   270000 perm   82 sec   (3287 perm/sec)   p_kst 8.748148e-03   p_cons 4.339259e-02   p_joint 3.062963e-03

Joint ci ratio: 1.204018e-01	ci left: 3.544288e-03	ci right 4.001792e-03	k: 1055	n:280000
Cons ci ratio: 3.478725e-02	ci left: 4.262698e-02	ci right 4.413963e-02	k: 12146	n:280000
KS ci ratio: 7.891359e-02	ci left: 8.390842e-03	ci right 9.083670e-03	k: 2445	n:280000
PRSS36   280000 perm   86 sec   (3240 perm/sec)   p_kst 8.732143e-03   p_cons 4.337857e-02   p_joint 3.767857e-03

Joint ci ratio: 1.193926e-01	ci left: 3.482272e-03	ci right 3.927736e-03	k: 1073	n:290000
Cons ci ratio: 3.413518e-02	ci left: 4.275360e-02	ci right 4.424174e-02	k: 12613	n:290000
KS ci ratio: 7.753116e-02	ci left: 8.399016e-03	ci right 9.079822e-03	k: 2533	n:290000
PRSS36   290000 perm   91 sec   (3200 perm/sec)   p_kst 8.734483e-03   p_cons 4.349310e-02   p_joint 3.700000e-03

Joint ci ratio: 1.174939e-01	ci left: 3.479406e-03	ci right 3.916934e-03	k: 1108	n:300000
Cons ci ratio: 3.358293e-02	ci left: 4.271331e-02	ci right 4.417553e-02	k: 13032	n:300000
KS ci ratio: 7.618961e-02	ci left: 8.413285e-03	ci right 9.082924e-03	k: 2623	n:300000
PRSS36   300000 perm   95 sec   (3163 perm/sec)   p_kst 8.743333e-03   p_cons 4.344000e-02   p_joint 3.693333e-03

Joint ci ratio: 1.179286e-01	ci left: 3.342107e-03	ci right 3.764032e-03	k: 1100	n:310000
Cons ci ratio: 3.306692e-02	ci left: 4.265019e-02	ci right 4.408739e-02	k: 13443	n:310000
KS ci ratio: 7.495719e-02	ci left: 8.417230e-03	ci right 9.075874e-03	k: 2710	n:310000
PRSS36   310000 perm   99 sec   (3125 perm/sec)   p_kst 8.741935e-03   p_cons 4.336452e-02   p_joint 3.548387e-03

Joint ci ratio: 1.177743e-01	ci left: 3.246755e-03	ci right 3.656069e-03	k: 1103	n:320000
Cons ci ratio: 3.256906e-02	ci left: 4.260359e-02	ci right 4.401720e-02	k: 13858	n:320000
KS ci ratio: 7.378270e-02	ci left: 8.421011e-03	ci right 9.069182e-03	k: 2797	n:320000
PRSS36   320000 perm   104 sec   (3089 perm/sec)   p_kst 8.740625e-03   p_cons 4.330625e-02   p_joint 3.446875e-03

Joint ci ratio: 1.142518e-01	ci left: 3.351403e-03	ci right 3.760421e-03	k: 1172	n:330000
Cons ci ratio: 3.450453e-02	ci left: 3.698958e-02	ci right 3.829128e-02	k: 12420	n:330000
KS ci ratio: 7.266174e-02	ci left: 8.424638e-03	ci right 9.062821e-03	k: 2884	n:330000
PRSS36   330000 perm   108 sec   (3054 perm/sec)   p_kst 8.739394e-03   p_cons 3.763636e-02   p_joint 3.551515e-03

Joint ci ratio: 1.128192e-01	ci left: 3.338561e-03	ci right 3.740562e-03	k: 1202	n:340000
Cons ci ratio: 3.400629e-02	ci left: 3.697181e-02	ci right 3.825373e-02	k: 12787	n:340000
KS ci ratio: 7.133655e-02	ci left: 8.488793e-03	ci right 9.119622e-03	k: 2992	n:340000
PRSS36   340000 perm   113 sec   (3020 perm/sec)   p_kst 8.800000e-03   p_cons 3.760882e-02   p_joint 3.535294e-03

Joint ci ratio: 1.113938e-01	ci left: 3.329260e-03	ci right 3.724744e-03	k: 1233	n:350000
Cons ci ratio: 3.352110e-02	ci left: 3.697219e-02	ci right 3.823548e-02	k: 13160	n:350000
KS ci ratio: 7.019557e-02	ci left: 8.521306e-03	ci right 9.144010e-03	k: 3090	n:350000
PRSS36   350000 perm   117 sec   (2987 perm/sec)   p_kst 8.828571e-03   p_cons 3.760000e-02   p_joint 3.522857e-03

Joint ci ratio: 1.111285e-01	ci left: 3.252976e-03	ci right 3.638418e-03	k: 1239	n:360000
Cons ci ratio: 3.305736e-02	ci left: 3.696992e-02	ci right 3.821532e-02	k: 13532	n:360000
KS ci ratio: 6.905305e-02	ci left: 8.565739e-03	ci right 9.181094e-03	k: 3193	n:360000
PRSS36   360000 perm   122 sec   (2954 perm/sec)   p_kst 8.869444e-03   p_cons 3.758889e-02   p_joint 3.441667e-03

Joint ci ratio: 1.139818e-01	ci left: 3.004812e-03	ci right 3.370605e-03	k: 1178	n:370000
Cons ci ratio: 3.261601e-02	ci left: 3.695983e-02	ci right 3.818796e-02	k: 13901	n:370000
KS ci ratio: 6.812107e-02	ci left: 8.567992e-03	ci right 9.174872e-03	k: 3281	n:370000
PRSS36   370000 perm   127 sec   (2922 perm/sec)   p_kst 8.867568e-03   p_cons 3.757027e-02   p_joint 3.183784e-03

Joint ci ratio: 1.123727e-01	ci left: 3.012679e-03	ci right 3.373909e-03	k: 1212	n:380000
Cons ci ratio: 3.217314e-02	ci left: 3.699217e-02	ci right 3.820437e-02	k: 14286	n:380000
KS ci ratio: 6.744832e-02	ci left: 8.513250e-03	ci right 9.110065e-03	k: 3347	n:380000
PRSS36   380000 perm   131 sec   (2890 perm/sec)   p_kst 8.807895e-03   p_cons 3.759474e-02   p_joint 3.189474e-03

Joint ci ratio: 9.746280e-02	ci left: 3.929382e-03	ci right 4.334450e-03	k: 1610	n:390000
Cons ci ratio: 3.179515e-02	ci left: 3.691608e-02	ci right 3.811132e-02	k: 14629	n:390000
KS ci ratio: 6.801142e-02	ci left: 8.158795e-03	ci right 8.735724e-03	k: 3293	n:390000
PRSS36   390000 perm   136 sec   (2858 perm/sec)   p_kst 8.443590e-03   p_cons 3.751026e-02   p_joint 4.128205e-03

Outputting figure to mutsig2_images.part000000000139/PRSS36.4_2628_390000_0.0084436_0.03751_0.0041282.png
                gene_name: PRSS36
               theta_stop: 0.097 
                    nperm: 390000 
                     p_ks: 0.0084 
        ci_ks_bounds_left: 0.0082 
       ci_ks_bounds_right: 0.0087 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.0041 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0043 

Current progress: 40 percent done.
PRSS38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
Cons ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
PRSS38   10000 perm   2 sec   (6112 perm/sec)   p_kst 4.050000e-02   p_cons 5.422000e-01   p_joint 2.027000e-01

Joint ci ratio: 7.721562e-02	ci left: 1.097251e-01	ci right 1.185874e-01	k: 2282	n:20000
Cons ci ratio: 2.541451e-02	ci left: 5.363156e-01	ci right 5.501718e-01	k: 10865	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
PRSS38   20000 perm   4 sec   (5474 perm/sec)   p_kst 4.190000e-02   p_cons 5.432500e-01   p_joint 1.141000e-01

Joint ci ratio: 7.494686e-02	ci left: 8.042615e-02	ci right 8.672143e-02	k: 2506	n:30000
Cons ci ratio: 2.072694e-02	ci left: 5.381765e-01	ci right 5.494817e-01	k: 16315	n:30000
KS ci ratio: 1.073342e-01	ci left: 4.027750e-02	ci right 4.487829e-02	k: 1276	n:30000
PRSS38   30000 perm   6 sec   (5225 perm/sec)   p_kst 4.253333e-02   p_cons 5.438333e-01   p_joint 8.353333e-02

Joint ci ratio: 6.819535e-02	ci left: 7.369208e-02	ci right 7.891962e-02	k: 3051	n:40000
Cons ci ratio: 1.800126e-02	ci left: 5.375273e-01	ci right 5.473165e-01	k: 21697	n:40000
KS ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
PRSS38   40000 perm   8 sec   (5053 perm/sec)   p_kst 4.222500e-02   p_cons 5.424250e-01   p_joint 7.627500e-02

Outputting figure to mutsig2_images.part000000000139/PRSS38.4_1001_40000_0.042225_0.54243_0.076275.png
                gene_name: PRSS38
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 43 percent done.
PSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
PSD   10000 perm   2 sec   (5525 perm/sec)   p_kst 4.803000e-01   p_cons 8.550000e-02   p_joint 3.160000e-01

Joint ci ratio: 5.911097e-02	ci left: 1.748950e-01	ci right 1.855981e-01	k: 3604	n:20000
Cons ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
KS ci ratio: 2.891178e-02	ci left: 4.719551e-01	ci right 4.858510e-01	k: 9578	n:20000
PSD   20000 perm   4 sec   (4953 perm/sec)   p_kst 4.789000e-01   p_cons 8.560000e-02   p_joint 1.802000e-01

Outputting figure to mutsig2_images.part000000000139/PSD.4_3139_20000_0.4789_0.0856_0.1802.png
                gene_name: PSD
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 45 percent done.
PSEN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
PSEN2   10000 perm   2 sec   (5921 perm/sec)   p_kst 4.071000e-01   p_cons 2.986000e-01   p_joint 5.529000e-01

Outputting figure to mutsig2_images.part000000000139/PSEN2.4_1387_10000_0.4071_0.2986_0.5529.png
                gene_name: PSEN2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 47 percent done.
PSG1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
Cons ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
KS ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
PSG1   10000 perm   2 sec   (6385 perm/sec)   p_kst 4.698000e-01   p_cons 1.753000e-01   p_joint 5.448000e-01

Outputting figure to mutsig2_images.part000000000139/PSG1.3_1337_10000_0.4698_0.1753_0.5448.png
                gene_name: PSG1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 49 percent done.
PSMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
Cons ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
KS ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
PSMB4   10000 perm   2 sec   (6189 perm/sec)   p_kst 2.018000e-01   p_cons 2.968000e-01   p_joint 3.824000e-01

Outputting figure to mutsig2_images.part000000000139/PSMB4.4_823_10000_0.2018_0.2968_0.3824.png
                gene_name: PSMB4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 51 percent done.
PSMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
PSMC4   10000 perm   2 sec   (6365 perm/sec)   p_kst 1.788000e-01   p_cons 1.038000e-01   p_joint 3.433000e-01

Joint ci ratio: 4.562351e-02	ci left: 2.634092e-01	ci right 2.757578e-01	k: 5391	n:20000
Cons ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
KS ci ratio: 6.002700e-02	ci left: 1.704482e-01	ci right 1.810463e-01	k: 3514	n:20000
PSMC4   20000 perm   4 sec   (5649 perm/sec)   p_kst 1.757000e-01   p_cons 1.049500e-01   p_joint 2.695500e-01

Outputting figure to mutsig2_images.part000000000139/PSMC4.4_1301_20000_0.1757_0.10495_0.26955.png
                gene_name: PSMC4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 53 percent done.
PSMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
Cons ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
KS ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
PSMD1   10000 perm   2 sec   (5113 perm/sec)   p_kst 3.673000e-01   p_cons 1.416000e-01   p_joint 4.602000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD1.4_2958_10000_0.3673_0.1416_0.4602.png
                gene_name: PSMD1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
PSMD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
PSMD12   10000 perm   2 sec   (5869 perm/sec)   p_kst 4.660000e-01   p_cons 7.152000e-01   p_joint 5.580000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD12.4_1415_10000_0.466_0.7152_0.558.png
                gene_name: PSMD12
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 57 percent done.
PRSS35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
KS ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
PRSS35   10000 perm   1 sec   (6848 perm/sec)   p_kst 4.946000e-01   p_cons 6.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS35.3_1246_10000_0.4946_0.6863_1.png
                gene_name: PRSS35
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
PSMA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
PSMA6   10000 perm   1 sec   (7082 perm/sec)   p_kst 8.690000e-02   p_cons 2.825000e-01   p_joint 1.304000e-01

Joint ci ratio: 7.428916e-02	ci left: 1.176419e-01	ci right 1.267683e-01	k: 2443	n:20000
Cons ci ratio: 4.401150e-02	ci left: 2.777075e-01	ci right 2.902553e-01	k: 5679	n:20000
KS ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
PSMA6   20000 perm   3 sec   (6186 perm/sec)   p_kst 9.290000e-02   p_cons 2.839500e-01   p_joint 1.221500e-01

Outputting figure to mutsig2_images.part000000000139/PSMA6.3_769_20000_0.0929_0.28395_0.12215.png
                gene_name: PSMA6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 62 percent done.
PSMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
PSMD2   10000 perm   2 sec   (5716 perm/sec)   p_kst 1.969000e-01   p_cons 1.280000e-02   p_joint 4.290000e-02

Joint ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
Cons ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
KS ci ratio: 5.667008e-02	ci left: 1.875504e-01	ci right 1.985390e-01	k: 3860	n:20000
PSMD2   20000 perm   4 sec   (5100 perm/sec)   p_kst 1.930000e-01   p_cons 1.395000e-02   p_joint 6.400000e-02

Joint ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
Cons ci ratio: 1.920271e-01	ci left: 1.238345e-02	ci right 1.504528e-02	k: 410	n:30000
KS ci ratio: 4.616497e-02	ci left: 1.892742e-01	ci right 1.982518e-01	k: 5812	n:30000
PSMD2   30000 perm   6 sec   (4858 perm/sec)   p_kst 1.937333e-01   p_cons 1.366667e-02   p_joint 4.546667e-02

Joint ci ratio: 8.897941e-02	ci left: 4.421228e-02	ci right 4.835390e-02	k: 1850	n:40000
Cons ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
KS ci ratio: 3.978498e-02	ci left: 1.914000e-01	ci right 1.991943e-01	k: 7811	n:40000
PSMD2   40000 perm   8 sec   (4707 perm/sec)   p_kst 1.952750e-01   p_cons 1.362500e-02   p_joint 4.625000e-02

Joint ci ratio: 6.459567e-02	ci left: 6.637978e-02	ci right 7.083046e-02	k: 3429	n:50000
Cons ci ratio: 1.504233e-01	ci left: 1.239124e-02	ci right 1.442583e-02	k: 669	n:50000
KS ci ratio: 3.567564e-02	ci left: 1.910185e-01	ci right 1.979770e-01	k: 9724	n:50000
PSMD2   50000 perm   11 sec   (4587 perm/sec)   p_kst 1.944800e-01   p_cons 1.338000e-02   p_joint 6.858000e-02

Joint ci ratio: 7.329755e-02	ci left: 4.382981e-02	ci right 4.718100e-02	k: 2729	n:60000
Cons ci ratio: 1.358686e-01	ci left: 1.275291e-02	ci right 1.462789e-02	k: 820	n:60000
KS ci ratio: 3.263848e-02	ci left: 1.906437e-01	ci right 1.969859e-01	k: 11628	n:60000
PSMD2   60000 perm   13 sec   (4486 perm/sec)   p_kst 1.938000e-01   p_cons 1.366667e-02   p_joint 4.548333e-02

Joint ci ratio: 5.728487e-02	ci left: 6.090106e-02	ci right 6.450672e-02	k: 4388	n:70000
Cons ci ratio: 1.263822e-01	ci left: 1.269969e-02	ci right 1.442670e-02	k: 948	n:70000
KS ci ratio: 3.019277e-02	ci left: 1.911331e-01	ci right 1.970066e-01	k: 13584	n:70000
PSMD2   70000 perm   16 sec   (4396 perm/sec)   p_kst 1.940571e-01   p_cons 1.354286e-02   p_joint 6.268571e-02

Joint ci ratio: 6.297183e-02	ci left: 4.474329e-02	ci right 4.766474e-02	k: 3695	n:80000
Cons ci ratio: 1.187522e-01	ci left: 1.263894e-02	ci right 1.424663e-02	k: 1074	n:80000
KS ci ratio: 2.825825e-02	ci left: 1.911529e-01	ci right 1.966444e-01	k: 15511	n:80000
PSMD2   80000 perm   19 sec   (4312 perm/sec)   p_kst 1.938875e-01   p_cons 1.342500e-02   p_joint 4.618750e-02

Joint ci ratio: 5.045859e-02	ci left: 6.125652e-02	ci right 6.443840e-02	k: 5655	n:90000
Cons ci ratio: 1.112806e-01	ci left: 1.284265e-02	ci right 1.436672e-02	k: 1223	n:90000
KS ci ratio: 2.672004e-02	ci left: 1.904039e-01	ci right 1.955715e-01	k: 17368	n:90000
PSMD2   90000 perm   21 sec   (4226 perm/sec)   p_kst 1.929778e-01   p_cons 1.358889e-02   p_joint 6.283333e-02

Joint ci ratio: 4.772132e-02	ci left: 6.169958e-02	ci right 6.472581e-02	k: 6320	n:100000
Cons ci ratio: 1.060454e-01	ci left: 1.276466e-02	ci right 1.420376e-02	k: 1347	n:100000
KS ci ratio: 2.537974e-02	ci left: 1.901598e-01	ci right 1.950580e-01	k: 19260	n:100000
PSMD2   100000 perm   24 sec   (4146 perm/sec)   p_kst 1.926000e-01   p_cons 1.347000e-02   p_joint 6.320000e-02

Joint ci ratio: 5.394233e-02	ci left: 4.457205e-02	ci right 4.705197e-02	k: 5038	n:110000
Cons ci ratio: 1.017663e-01	ci left: 1.263134e-02	ci right 1.399450e-02	k: 1463	n:110000
KS ci ratio: 2.421641e-02	ci left: 1.900470e-01	ci right 1.947147e-01	k: 21161	n:110000
PSMD2   110000 perm   27 sec   (4066 perm/sec)   p_kst 1.923727e-01   p_cons 1.330000e-02   p_joint 4.580000e-02

Joint ci ratio: 5.174010e-02	ci left: 4.446764e-02	ci right 4.683771e-02	k: 5477	n:120000
Cons ci ratio: 9.806090e-02	ci left: 1.249682e-02	ci right 1.379353e-02	k: 1576	n:120000
KS ci ratio: 2.321585e-02	ci left: 1.897416e-01	ci right 1.942066e-01	k: 23036	n:120000
PSMD2   120000 perm   30 sec   (3992 perm/sec)   p_kst 1.919667e-01   p_cons 1.313333e-02   p_joint 4.564167e-02

Outputting figure to mutsig2_images.part000000000139/PSMD2.3_2811_120000_0.19197_0.013133_0.045642.png
                gene_name: PSMD2
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 64 percent done.
PSMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
KS ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
PSMD3   10000 perm   2 sec   (6002 perm/sec)   p_kst 9.102000e-01   p_cons 6.244000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMD3.3_1653_10000_0.9102_0.6244_1.png
                gene_name: PSMD3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
PSMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
PSMD7   10000 perm   2 sec   (5693 perm/sec)   p_kst 1.781000e-01   p_cons 4.934000e-01   p_joint 3.481000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD7.3_1003_10000_0.1781_0.4934_0.3481.png
                gene_name: PSMD7
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 68 percent done.
PSMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
PSMF1   10000 perm   2 sec   (5742 perm/sec)   p_kst 1.428000e-01   p_cons 2.202000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000139/PSMF1.3_844_10000_0.1428_0.2202_0.3948.png
                gene_name: PSMF1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 70 percent done.
PRSS37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
PRSS37   10000 perm   1 sec   (6833 perm/sec)   p_kst 8.817000e-01   p_cons 8.900000e-03   p_joint 2.130000e-02

Joint ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
Cons ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
KS ci ratio: 1.006407e-02	ci left: 8.790237e-01	ci right 8.879645e-01	k: 17671	n:20000
PRSS37   20000 perm   3 sec   (6027 perm/sec)   p_kst 8.835500e-01   p_cons 1.040000e-02   p_joint 1.690000e-02

Joint ci ratio: 1.415290e-01	ci left: 2.316622e-02	ci right 2.672660e-02	k: 747	n:30000
Cons ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
KS ci ratio: 8.234927e-03	ci left: 8.794104e-01	ci right 8.867152e-01	k: 26493	n:30000
PRSS37   30000 perm   5 sec   (5551 perm/sec)   p_kst 8.831000e-01   p_cons 1.010000e-02   p_joint 2.490000e-02

Joint ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
Cons ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
KS ci ratio: 7.103869e-03	ci left: 8.807203e-01	ci right 8.870239e-01	k: 35356	n:40000
PRSS37   40000 perm   7 sec   (5405 perm/sec)   p_kst 8.839000e-01   p_cons 9.950000e-03   p_joint 2.567500e-02

Joint ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
Cons ci ratio: 1.767632e-01	ci left: 8.878603e-03	ci right 1.061903e-02	k: 486	n:50000
KS ci ratio: 6.347630e-03	ci left: 8.812619e-01	ci right 8.868934e-01	k: 44205	n:50000
PRSS37   50000 perm   9 sec   (5270 perm/sec)   p_kst 8.841000e-01   p_cons 9.720000e-03   p_joint 2.490000e-02

Joint ci ratio: 9.120725e-02	ci left: 2.850280e-02	ci right 3.124293e-02	k: 1791	n:60000
Cons ci ratio: 1.608627e-01	ci left: 9.011227e-03	ci right 1.060339e-02	k: 587	n:60000
KS ci ratio: 5.832623e-03	ci left: 8.801489e-01	ci right 8.853140e-01	k: 52965	n:60000
PRSS37   60000 perm   12 sec   (5027 perm/sec)   p_kst 8.827500e-01   p_cons 9.783333e-03   p_joint 2.985000e-02

Joint ci ratio: 9.010039e-02	ci left: 2.514103e-02	ci right 2.752703e-02	k: 1842	n:70000
Cons ci ratio: 1.487113e-01	ci left: 9.097242e-03	ci right 1.057239e-02	k: 687	n:70000
KS ci ratio: 5.409429e-03	ci left: 8.799762e-01	ci right 8.847635e-01	k: 61767	n:70000
PRSS37   70000 perm   14 sec   (4878 perm/sec)   p_kst 8.823857e-01   p_cons 9.814286e-03   p_joint 2.631429e-02

Joint ci ratio: 8.468027e-02	ci left: 2.498168e-02	ci right 2.720286e-02	k: 2086	n:80000
Cons ci ratio: 1.404006e-01	ci left: 8.972089e-03	ci right 1.033882e-02	k: 771	n:80000
KS ci ratio: 5.055727e-03	ci left: 8.803115e-01	ci right 8.847857e-01	k: 70605	n:80000
PRSS37   80000 perm   17 sec   (4802 perm/sec)   p_kst 8.825625e-01   p_cons 9.637500e-03   p_joint 2.607500e-02

Joint ci ratio: 8.023963e-02	ci left: 2.479577e-02	ci right 2.687939e-02	k: 2324	n:90000
Cons ci ratio: 1.336591e-01	ci left: 8.833573e-03	ci right 1.010945e-02	k: 851	n:90000
KS ci ratio: 4.781025e-03	ci left: 8.798073e-01	ci right 8.840347e-01	k: 79374	n:90000
PRSS37   90000 perm   19 sec   (4723 perm/sec)   p_kst 8.819333e-01   p_cons 9.455556e-03   p_joint 2.582222e-02

Joint ci ratio: 7.448558e-02	ci left: 2.594524e-02	ci right 2.796232e-02	k: 2694	n:100000
Cons ci ratio: 1.266427e-01	ci left: 8.888663e-03	ci right 1.010004e-02	k: 948	n:100000
KS ci ratio: 4.530294e-03	ci left: 8.801657e-01	ci right 8.841721e-01	k: 88218	n:100000
PRSS37   100000 perm   21 sec   (4654 perm/sec)   p_kst 8.821800e-01   p_cons 9.480000e-03   p_joint 2.694000e-02

Joint ci ratio: 7.123562e-02	ci left: 2.583570e-02	ci right 2.775299e-02	k: 2946	n:110000
Cons ci ratio: 1.210951e-01	ci left: 8.864622e-03	ci right 1.001601e-02	k: 1037	n:110000
KS ci ratio: 4.323386e-03	ci left: 8.800698e-01	ci right 8.838919e-01	k: 97019	n:110000
PRSS37   110000 perm   24 sec   (4595 perm/sec)   p_kst 8.819909e-01   p_cons 9.427273e-03   p_joint 2.678182e-02

Joint ci ratio: 6.809321e-02	ci left: 2.595910e-02	ci right 2.779720e-02	k: 3224	n:120000
Cons ci ratio: 1.164791e-01	ci left: 8.805091e-03	ci right 9.902150e-03	k: 1121	n:120000
KS ci ratio: 4.144440e-03	ci left: 8.798929e-01	ci right 8.835553e-01	k: 105808	n:120000
PRSS37   120000 perm   27 sec   (4519 perm/sec)   p_kst 8.817333e-01   p_cons 9.341667e-03   p_joint 2.686667e-02

Joint ci ratio: 4.259603e-02	ci left: 5.985728e-02	ci right 6.247003e-02	k: 7950	n:130000
Cons ci ratio: 1.109688e-01	ci left: 8.979808e-03	ci right 1.004224e-02	k: 1235	n:130000
KS ci ratio: 3.983507e-03	ci left: 8.798778e-01	ci right 8.833974e-01	k: 114614	n:130000
PRSS37   130000 perm   29 sec   (4448 perm/sec)   p_kst 8.816462e-01   p_cons 9.500000e-03   p_joint 6.115385e-02

Joint ci ratio: 6.303779e-02	ci left: 2.603061e-02	ci right 2.773192e-02	k: 3762	n:140000
Cons ci ratio: 1.071387e-01	ci left: 8.963713e-03	ci right 9.985330e-03	k: 1325	n:140000
KS ci ratio: 3.835112e-03	ci left: 8.801333e-01	ci right 8.835223e-01	k: 123457	n:140000
PRSS37   140000 perm   32 sec   (4376 perm/sec)   p_kst 8.818357e-01   p_cons 9.464286e-03   p_joint 2.687143e-02

Joint ci ratio: 4.716329e-02	ci left: 4.298736e-02	ci right 4.507031e-02	k: 6603	n:150000
Cons ci ratio: 1.044645e-01	ci left: 8.813923e-03	ci right 9.791852e-03	k: 1394	n:150000
KS ci ratio: 3.707479e-03	ci left: 8.800549e-01	ci right 8.833303e-01	k: 132255	n:150000
PRSS37   150000 perm   35 sec   (4305 perm/sec)   p_kst 8.817000e-01   p_cons 9.293333e-03   p_joint 4.402000e-02

Joint ci ratio: 5.929008e-02	ci left: 2.580469e-02	ci right 2.738753e-02	k: 4254	n:160000
Cons ci ratio: 1.012848e-01	ci left: 8.804989e-03	ci right 9.750421e-03	k: 1483	n:160000
KS ci ratio: 3.588564e-03	ci left: 8.801766e-01	ci right 8.833470e-01	k: 141083	n:160000
PRSS37   160000 perm   38 sec   (4239 perm/sec)   p_kst 8.817687e-01   p_cons 9.268750e-03   p_joint 2.658750e-02

Joint ci ratio: 5.881524e-02	ci left: 2.471522e-02	ci right 2.621867e-02	k: 4328	n:170000
Cons ci ratio: 9.834733e-02	ci left: 8.803244e-03	ci right 9.719491e-03	k: 1573	n:170000
KS ci ratio: 3.481680e-03	ci left: 8.802085e-01	ci right 8.832843e-01	k: 149898	n:170000
PRSS37   170000 perm   41 sec   (4174 perm/sec)   p_kst 8.817529e-01   p_cons 9.252941e-03   p_joint 2.545882e-02

Outputting figure to mutsig2_images.part000000000139/PRSS37.2_728_170000_0.88175_0.0092529_0.025459.png
                gene_name: PRSS37
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 72 percent done.
PRSS48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
KS ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
PRSS48   10000 perm   1 sec   (6982 perm/sec)   p_kst 7.383000e-01   p_cons 8.974000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS48.2_1005_10000_0.7383_0.8974_0.9836.png
                gene_name: PRSS48
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
PRSSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
PRSSL1   10000 perm   2 sec   (6606 perm/sec)   p_kst 2.100000e-03   p_cons 6.650000e-02   p_joint 1.300000e-03

Joint ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
Cons ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
KS ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
PRSSL1   20000 perm   3 sec   (5836 perm/sec)   p_kst 2.100000e-03   p_cons 5.970000e-02   p_joint 1.500000e-04

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 8.590647e-02	ci left: 6.210525e-02	ci right 6.771271e-02	k: 1946	n:30000
KS ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
PRSSL1   30000 perm   5 sec   (5542 perm/sec)   p_kst 2.333333e-03   p_cons 6.486667e-02   p_joint 7.000000e-04

Joint ci ratio: 5.776328e-01	ci left: 8.206974e-04	ci right 1.505052e-03	k: 45	n:40000
Cons ci ratio: 7.489229e-02	ci left: 6.169437e-02	ci right 6.651915e-02	k: 2563	n:40000
KS ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
PRSSL1   40000 perm   8 sec   (5135 perm/sec)   p_kst 2.325000e-03   p_cons 6.407500e-02   p_joint 1.125000e-03

Joint ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
Cons ci ratio: 6.684112e-02	ci left: 6.220472e-02	ci right 6.652602e-02	k: 3217	n:50000
KS ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
PRSSL1   50000 perm   10 sec   (4928 perm/sec)   p_kst 2.440000e-03   p_cons 6.434000e-02   p_joint 9.600000e-04

Joint ci ratio: 5.058125e-01	ci left: 7.486406e-04	ci right 1.268248e-03	k: 59	n:60000
Cons ci ratio: 6.071215e-02	ci left: 6.299087e-02	ci right 6.695134e-02	k: 3897	n:60000
KS ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
PRSSL1   60000 perm   12 sec   (4886 perm/sec)   p_kst 2.450000e-03   p_cons 6.495000e-02   p_joint 9.833333e-04

Joint ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
Cons ci ratio: 5.641895e-02	ci left: 6.269123e-02	ci right 6.634497e-02	k: 4515	n:70000
KS ci ratio: 2.994014e-01	ci left: 2.077566e-03	ci right 2.821779e-03	k: 170	n:70000
PRSSL1   70000 perm   14 sec   (4836 perm/sec)   p_kst 2.428571e-03   p_cons 6.450000e-02   p_joint 6.714286e-04

Joint ci ratio: 8.356267e-01	ci left: 1.624987e-04	ci right 4.012313e-04	k: 21	n:80000
Cons ci ratio: 5.282517e-02	ci left: 6.269627e-02	ci right 6.611040e-02	k: 5151	n:80000
KS ci ratio: 2.775339e-01	ci left: 2.142592e-03	ci right 2.844265e-03	k: 198	n:80000
PRSSL1   80000 perm   17 sec   (4777 perm/sec)   p_kst 2.475000e-03   p_cons 6.438750e-02   p_joint 2.625000e-04

Joint ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
Cons ci ratio: 4.996552e-02	ci left: 6.240949e-02	ci right 6.561868e-02	k: 5760	n:90000
KS ci ratio: 2.587097e-01	ci left: 2.215490e-03	ci right 2.883884e-03	k: 228	n:90000
PRSSL1   90000 perm   19 sec   (4699 perm/sec)   p_kst 2.533333e-03   p_cons 6.400000e-02   p_joint 2.888889e-04

Joint ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
Cons ci ratio: 4.742171e-02	ci left: 6.244125e-02	ci right 6.548410e-02	k: 6395	n:100000
KS ci ratio: 2.437323e-01	ci left: 2.265704e-03	ci right 2.903693e-03	k: 257	n:100000
PRSSL1   100000 perm   22 sec   (4629 perm/sec)   p_kst 2.570000e-03   p_cons 6.395000e-02   p_joint 2.700000e-04

Joint ci ratio: 7.278265e-01	ci left: 1.691501e-04	ci right 3.678682e-04	k: 28	n:110000
Cons ci ratio: 4.528571e-02	ci left: 6.232673e-02	ci right 6.522360e-02	k: 7014	n:110000
KS ci ratio: 2.343854e-01	ci left: 2.239205e-03	ci right 2.842047e-03	k: 278	n:110000
PRSSL1   110000 perm   24 sec   (4560 perm/sec)   p_kst 2.527273e-03   p_cons 6.376364e-02   p_joint 2.545455e-04

Joint ci ratio: 4.495106e-01	ci left: 4.916329e-04	ci right 7.833808e-04	k: 75	n:120000
Cons ci ratio: 4.322739e-02	ci left: 6.274532e-02	ci right 6.552578e-02	k: 7695	n:120000
KS ci ratio: 2.209279e-01	ci left: 2.327662e-03	ci right 2.913454e-03	k: 313	n:120000
PRSSL1   120000 perm   27 sec   (4505 perm/sec)   p_kst 2.608333e-03   p_cons 6.412500e-02   p_joint 6.250000e-04

Joint ci ratio: 6.358126e-01	ci left: 2.004032e-04	ci right 3.922837e-04	k: 37	n:130000
Cons ci ratio: 4.155907e-02	ci left: 6.272113e-02	ci right 6.539067e-02	k: 8326	n:130000
KS ci ratio: 2.116895e-01	ci left: 2.352335e-03	ci right 2.916369e-03	k: 341	n:130000
PRSSL1   130000 perm   29 sec   (4445 perm/sec)   p_kst 2.623077e-03   p_cons 6.404615e-02   p_joint 2.846154e-04

Joint ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
Cons ci ratio: 3.995112e-02	ci left: 6.305598e-02	ci right 6.563353e-02	k: 9007	n:140000
KS ci ratio: 2.040747e-01	ci left: 2.360360e-03	ci right 2.903423e-03	k: 367	n:140000
PRSSL1   140000 perm   32 sec   (4386 perm/sec)   p_kst 2.621429e-03   p_cons 6.433571e-02   p_joint 2.857143e-04

Joint ci ratio: 5.977067e-01	ci left: 2.018066e-04	ci right 3.784600e-04	k: 42	n:150000
Cons ci ratio: 3.857601e-02	ci left: 6.316290e-02	ci right 6.565397e-02	k: 9660	n:150000
KS ci ratio: 1.967266e-01	ci left: 2.380308e-03	ci right 2.905877e-03	k: 395	n:150000
PRSSL1   150000 perm   35 sec   (4325 perm/sec)   p_kst 2.633333e-03   p_cons 6.440000e-02   p_joint 2.800000e-04

Joint ci ratio: 5.842751e-01	ci left: 1.998223e-04	ci right 3.691573e-04	k: 44	n:160000
Cons ci ratio: 3.740555e-02	ci left: 6.302855e-02	ci right 6.543727e-02	k: 10276	n:160000
KS ci ratio: 1.892262e-01	ci left: 2.421884e-03	ci right 2.933902e-03	k: 427	n:160000
PRSSL1   160000 perm   38 sec   (4265 perm/sec)   p_kst 2.668750e-03   p_cons 6.422500e-02   p_joint 2.750000e-04

Joint ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
Cons ci ratio: 3.637836e-02	ci left: 6.277105e-02	ci right 6.510267e-02	k: 10868	n:170000
KS ci ratio: 1.825230e-01	ci left: 2.458903e-03	ci right 2.958297e-03	k: 459	n:170000
PRSSL1   170000 perm   41 sec   (4182 perm/sec)   p_kst 2.700000e-03   p_cons 6.392941e-02   p_joint 4.529412e-04

Joint ci ratio: 4.276061e-01	ci left: 3.672886e-04	ci right 5.715850e-04	k: 83	n:180000
Cons ci ratio: 3.539179e-02	ci left: 6.267522e-02	ci right 6.493885e-02	k: 11484	n:180000
KS ci ratio: 1.775741e-01	ci left: 2.460232e-03	ci right 2.944894e-03	k: 485	n:180000
PRSSL1   180000 perm   44 sec   (4122 perm/sec)   p_kst 2.694444e-03   p_cons 6.380000e-02   p_joint 4.611111e-04

Joint ci ratio: 4.177755e-01	ci left: 3.667707e-04	ci right 5.647813e-04	k: 87	n:190000
Cons ci ratio: 3.447832e-02	ci left: 6.260069e-02	ci right 6.480212e-02	k: 12102	n:190000
KS ci ratio: 1.726693e-01	ci left: 2.471657e-03	ci right 2.943719e-03	k: 513	n:190000
PRSSL1   190000 perm   47 sec   (4063 perm/sec)   p_kst 2.700000e-03   p_cons 6.369474e-02   p_joint 4.578947e-04

Joint ci ratio: 3.347926e-01	ci left: 5.705521e-04	ci right 8.043139e-04	k: 136	n:200000
Cons ci ratio: 3.358279e-02	ci left: 6.270793e-02	ci right 6.485474e-02	k: 12755	n:200000
KS ci ratio: 1.673773e-01	ci left: 2.506058e-03	ci right 2.968542e-03	k: 546	n:200000
PRSSL1   200000 perm   50 sec   (4002 perm/sec)   p_kst 2.730000e-03   p_cons 6.377500e-02   p_joint 6.800000e-04

Joint ci ratio: 3.276945e-01	ci left: 5.695786e-04	ci right 7.969522e-04	k: 142	n:210000
Cons ci ratio: 3.281246e-02	ci left: 6.259297e-02	ci right 6.468576e-02	k: 13363	n:210000
KS ci ratio: 1.636797e-01	ci left: 2.500837e-03	ci right 2.951158e-03	k: 571	n:210000
PRSSL1   210000 perm   53 sec   (3940 perm/sec)   p_kst 2.719048e-03   p_cons 6.363333e-02   p_joint 6.761905e-04

Joint ci ratio: 3.221129e-01	ci left: 5.645623e-04	ci right 7.853020e-04	k: 147	n:220000
Cons ci ratio: 3.211859e-02	ci left: 6.239425e-02	ci right 6.443546e-02	k: 13950	n:220000
KS ci ratio: 1.600823e-01	ci left: 2.500557e-03	ci right 2.939980e-03	k: 597	n:220000
PRSSL1   220000 perm   57 sec   (3880 perm/sec)   p_kst 2.713636e-03   p_cons 6.340909e-02   p_joint 6.681818e-04

Joint ci ratio: 3.157761e-01	ci left: 5.640150e-04	ci right 7.793267e-04	k: 153	n:230000
Cons ci ratio: 3.139208e-02	ci left: 6.249377e-02	ci right 6.449116e-02	k: 14602	n:230000
KS ci ratio: 1.574732e-01	ci left: 2.475336e-03	ci right 2.902567e-03	k: 617	n:230000
PRSSL1   230000 perm   60 sec   (3823 perm/sec)   p_kst 2.682609e-03   p_cons 6.348696e-02   p_joint 6.652174e-04

Joint ci ratio: 3.023281e-01	ci left: 5.943278e-04	ci right 8.096936e-04	k: 167	n:240000
Cons ci ratio: 3.076554e-02	ci left: 6.238278e-02	ci right 6.433611e-02	k: 15205	n:240000
KS ci ratio: 1.529576e-01	ci left: 2.520381e-03	ci right 2.941771e-03	k: 654	n:240000
PRSSL1   240000 perm   64 sec   (3767 perm/sec)   p_kst 2.725000e-03   p_cons 6.335417e-02   p_joint 6.958333e-04

Joint ci ratio: 3.005474e-01	ci left: 5.779489e-04	ci right 7.859103e-04	k: 169	n:250000
Cons ci ratio: 3.012019e-02	ci left: 6.249552e-02	ci right 6.441062e-02	k: 15862	n:250000
KS ci ratio: 1.509011e-01	ci left: 2.488826e-03	ci right 2.898839e-03	k: 672	n:250000
PRSSL1   250000 perm   67 sec   (3713 perm/sec)   p_kst 2.688000e-03   p_cons 6.344800e-02   p_joint 6.760000e-04

Joint ci ratio: 2.945444e-01	ci left: 5.806340e-04	ci right 7.846096e-04	k: 176	n:260000
Cons ci ratio: 2.952813e-02	ci left: 6.254268e-02	ci right 6.442091e-02	k: 16504	n:260000
KS ci ratio: 1.476453e-01	ci left: 2.504178e-03	ci right 2.907034e-03	k: 702	n:260000
PRSSL1   260000 perm   71 sec   (3661 perm/sec)   p_kst 2.700000e-03   p_cons 6.347692e-02   p_joint 6.769231e-04

Joint ci ratio: 2.888872e-01	ci left: 5.831583e-04	ci right 7.833674e-04	k: 183	n:270000
Cons ci ratio: 2.897959e-02	ci left: 6.254622e-02	ci right 6.438909e-02	k: 17135	n:270000
KS ci ratio: 1.449888e-01	ci left: 2.504202e-03	ci right 2.899186e-03	k: 728	n:270000
PRSSL1   270000 perm   75 sec   (3611 perm/sec)   p_kst 2.696296e-03   p_cons 6.346296e-02   p_joint 6.777778e-04

Joint ci ratio: 4.178070e-01	ci left: 2.488767e-04	ci right 3.832510e-04	k: 87	n:280000
Cons ci ratio: 2.844173e-02	ci left: 6.262786e-02	ci right 6.443833e-02	k: 17788	n:280000
KS ci ratio: 1.420000e-01	ci left: 2.521507e-03	ci right 2.910328e-03	k: 759	n:280000
PRSSL1   280000 perm   79 sec   (3562 perm/sec)   p_kst 2.710714e-03   p_cons 6.352857e-02   p_joint 3.107143e-04

Joint ci ratio: 4.064192e-01	ci left: 2.557488e-04	ci right 3.890544e-04	k: 92	n:290000
Cons ci ratio: 2.797489e-02	ci left: 6.252603e-02	ci right 6.430340e-02	k: 18389	n:290000
KS ci ratio: 1.394541e-01	ci left: 2.527712e-03	ci right 2.909920e-03	k: 787	n:290000
PRSSL1   290000 perm   83 sec   (3513 perm/sec)   p_kst 2.713793e-03   p_cons 6.341034e-02   p_joint 3.172414e-04

Joint ci ratio: 2.730251e-01	ci left: 5.930138e-04	ci right 7.835128e-04	k: 205	n:300000
Cons ci ratio: 2.750943e-02	ci left: 6.252063e-02	ci right 6.426781e-02	k: 19017	n:300000
KS ci ratio: 1.370405e-01	ci left: 2.533560e-03	ci right 2.909482e-03	k: 815	n:300000
PRSSL1   300000 perm   87 sec   (3467 perm/sec)   p_kst 2.716667e-03   p_cons 6.339000e-02   p_joint 6.833333e-04

Joint ci ratio: 2.697716e-01	ci left: 5.889158e-04	ci right 7.754624e-04	k: 210	n:310000
Cons ci ratio: 2.704956e-02	ci left: 6.258954e-02	ci right 6.430895e-02	k: 19668	n:310000
KS ci ratio: 1.349083e-01	ci left: 2.532850e-03	ci right 2.902350e-03	k: 841	n:310000
PRSSL1   310000 perm   91 sec   (3421 perm/sec)   p_kst 2.712903e-03   p_cons 6.344516e-02   p_joint 6.774194e-04

Joint ci ratio: 2.678756e-01	ci left: 5.792550e-04	ci right 7.612351e-04	k: 213	n:320000
Cons ci ratio: 2.663230e-02	ci left: 6.256431e-02	ci right 6.425611e-02	k: 20290	n:320000
KS ci ratio: 1.331807e-01	ci left: 2.520142e-03	ci right 2.882707e-03	k: 863	n:320000
PRSSL1   320000 perm   95 sec   (3376 perm/sec)   p_kst 2.696875e-03   p_cons 6.340625e-02   p_joint 6.656250e-04

Joint ci ratio: 3.899943e-01	ci left: 2.465641e-04	ci right 3.685540e-04	k: 100	n:330000
Cons ci ratio: 2.621103e-02	ci left: 6.264320e-02	ci right 6.430993e-02	k: 20946	n:330000
KS ci ratio: 1.311473e-01	ci left: 2.522887e-03	ci right 2.879874e-03	k: 890	n:330000
PRSSL1   330000 perm   99 sec   (3332 perm/sec)   p_kst 2.696970e-03   p_cons 6.347273e-02   p_joint 3.030303e-04

Joint ci ratio: 3.843283e-01	ci left: 2.472769e-04	ci right 3.673924e-04	k: 103	n:340000
Cons ci ratio: 2.581999e-02	ci left: 6.266795e-02	ci right 6.431009e-02	k: 21585	n:340000
KS ci ratio: 1.289230e-01	ci left: 2.536897e-03	ci right 2.889311e-03	k: 921	n:340000
PRSSL1   340000 perm   103 sec   (3289 perm/sec)   p_kst 2.708824e-03   p_cons 6.348529e-02   p_joint 3.029412e-04

Joint ci ratio: 3.806859e-01	ci left: 2.453766e-04	ci right 3.631568e-04	k: 105	n:350000
Cons ci ratio: 2.542579e-02	ci left: 6.278518e-02	ci right 6.440491e-02	k: 22257	n:350000
KS ci ratio: 1.270087e-01	ci left: 2.541853e-03	ci right 2.889319e-03	k: 949	n:350000
PRSSL1   350000 perm   108 sec   (3249 perm/sec)   p_kst 2.711429e-03   p_cons 6.359143e-02   p_joint 3.000000e-04

Joint ci ratio: 3.789039e-01	ci left: 2.410731e-04	ci right 3.561111e-04	k: 106	n:360000
Cons ci ratio: 2.505903e-02	ci left: 6.284913e-02	ci right 6.444679e-02	k: 22912	n:360000
KS ci ratio: 1.253702e-01	ci left: 2.538498e-03	ci right 2.880696e-03	k: 974	n:360000
PRSSL1   360000 perm   112 sec   (3209 perm/sec)   p_kst 2.705556e-03   p_cons 6.364444e-02   p_joint 2.944444e-04

Joint ci ratio: 2.498466e-01	ci left: 5.818592e-04	ci right 7.504446e-04	k: 245	n:370000
Cons ci ratio: 2.471330e-02	ci left: 6.288291e-02	ci right 6.445906e-02	k: 23557	n:370000
KS ci ratio: 1.236695e-01	ci left: 2.540590e-03	ci right 2.878084e-03	k: 1001	n:370000
PRSSL1   370000 perm   117 sec   (3170 perm/sec)   p_kst 2.705405e-03   p_cons 6.366757e-02   p_joint 6.621622e-04

Joint ci ratio: 2.458801e-01	ci left: 5.862924e-04	ci right 7.530534e-04	k: 253	n:380000
Cons ci ratio: 2.437612e-02	ci left: 6.294123e-02	ci right 6.449701e-02	k: 24212	n:380000
KS ci ratio: 1.222748e-01	ci left: 2.532396e-03	ci right 2.864733e-03	k: 1024	n:380000
PRSSL1   380000 perm   121 sec   (3132 perm/sec)   p_kst 2.694737e-03   p_cons 6.371579e-02   p_joint 6.657895e-04

Joint ci ratio: 3.277463e-01	ci left: 3.066890e-04	ci right 4.291401e-04	k: 142	n:390000
Cons ci ratio: 2.406063e-02	ci left: 6.295589e-02	ci right 6.449162e-02	k: 24851	n:390000
KS ci ratio: 1.209841e-01	ci left: 2.522156e-03	ci right 2.849405e-03	k: 1046	n:390000
PRSSL1   390000 perm   126 sec   (3097 perm/sec)   p_kst 2.682051e-03   p_cons 6.372051e-02   p_joint 3.641026e-04

Joint ci ratio: 3.221620e-01	ci left: 3.105023e-04	ci right 4.319275e-04	k: 147	n:400000
Cons ci ratio: 2.376855e-02	ci left: 6.291277e-02	ci right 6.442856e-02	k: 25467	n:400000
KS ci ratio: 1.194537e-01	ci left: 2.524573e-03	ci right 2.847698e-03	k: 1073	n:400000
PRSSL1   400000 perm   131 sec   (3064 perm/sec)   p_kst 2.682500e-03   p_cons 6.366750e-02   p_joint 3.675000e-04

Joint ci ratio: 3.148021e-01	ci left: 3.186380e-04	ci right 4.398256e-04	k: 154	n:410000
Cons ci ratio: 2.348588e-02	ci left: 6.287671e-02	ci right 6.437337e-02	k: 26085	n:410000
KS ci ratio: 1.174463e-01	ci left: 2.550570e-03	ci right 2.871156e-03	k: 1110	n:410000
PRSSL1   410000 perm   135 sec   (3032 perm/sec)   p_kst 2.707317e-03   p_cons 6.362195e-02   p_joint 3.756098e-04

Joint ci ratio: 3.464291e-01	ci left: 2.520874e-04	ci right 3.597656e-04	k: 127	n:420000
Cons ci ratio: 2.321121e-02	ci left: 6.285194e-02	ci right 6.433028e-02	k: 26707	n:420000
KS ci ratio: 1.163012e-01	ci left: 2.540691e-03	ci right 2.856708e-03	k: 1132	n:420000
PRSSL1   420000 perm   140 sec   (3001 perm/sec)   p_kst 2.695238e-03   p_cons 6.358810e-02   p_joint 3.023810e-04

Joint ci ratio: 3.060418e-01	ci left: 3.231181e-04	ci right 4.419236e-04	k: 163	n:430000
Cons ci ratio: 2.292984e-02	ci left: 6.291169e-02	ci right 6.437327e-02	k: 27365	n:430000
KS ci ratio: 1.151889e-01	ci left: 2.531286e-03	ci right 2.842917e-03	k: 1154	n:430000
PRSSL1   430000 perm   145 sec   (2972 perm/sec)   p_kst 2.683721e-03   p_cons 6.363953e-02   p_joint 3.790698e-04

Joint ci ratio: 3.373277e-01	ci left: 2.551725e-04	ci right 3.606821e-04	k: 134	n:440000
Cons ci ratio: 2.267877e-02	ci left: 6.286258e-02	ci right 6.430681e-02	k: 27976	n:440000
KS ci ratio: 1.137210e-01	ci left: 2.539987e-03	ci right 2.848438e-03	k: 1184	n:440000
PRSSL1   440000 perm   150 sec   (2942 perm/sec)   p_kst 2.690909e-03   p_cons 6.358182e-02   p_joint 3.045455e-04

Joint ci ratio: 2.211410e-01	ci left: 6.206478e-04	ci right 7.770081e-04	k: 313	n:450000
Cons ci ratio: 2.241693e-02	ci left: 6.291521e-02	ci right 6.434375e-02	k: 28632	n:450000
KS ci ratio: 1.120769e-01	ci left: 2.559126e-03	ci right 2.865111e-03	k: 1219	n:450000
PRSSL1   450000 perm   155 sec   (2908 perm/sec)   p_kst 2.708889e-03   p_cons 6.362667e-02   p_joint 6.955556e-04

Joint ci ratio: 3.254866e-01	ci left: 2.640093e-04	ci right 3.685409e-04	k: 144	n:460000
Cons ci ratio: 2.218541e-02	ci left: 6.285102e-02	ci right 6.426318e-02	k: 29235	n:460000
KS ci ratio: 1.110805e-01	ci left: 2.549983e-03	ci right 2.851987e-03	k: 1241	n:460000
PRSSL1   460000 perm   160 sec   (2880 perm/sec)   p_kst 2.697826e-03   p_cons 6.355435e-02   p_joint 3.130435e-04

Joint ci ratio: 3.243708e-01	ci left: 2.603461e-04	ci right 3.630003e-04	k: 145	n:470000
Cons ci ratio: 2.193345e-02	ci left: 6.293781e-02	ci right 6.433566e-02	k: 29908	n:470000
KS ci ratio: 1.097624e-01	ci left: 2.557796e-03	ci right 2.856898e-03	k: 1271	n:470000
PRSSL1   470000 perm   165 sec   (2852 perm/sec)   p_kst 2.704255e-03   p_cons 6.363404e-02   p_joint 3.085106e-04

Joint ci ratio: 3.232663e-01	ci left: 2.568362e-04	ci right 3.576901e-04	k: 146	n:480000
Cons ci ratio: 2.171113e-02	ci left: 6.290500e-02	ci right 6.428778e-02	k: 30525	n:480000
KS ci ratio: 1.085738e-01	ci left: 2.561249e-03	ci right 2.857304e-03	k: 1299	n:480000
PRSSL1   480000 perm   170 sec   (2822 perm/sec)   p_kst 2.706250e-03   p_cons 6.359375e-02   p_joint 3.041667e-04

Joint ci ratio: 3.221730e-01	ci left: 2.534700e-04	ci right 3.525960e-04	k: 147	n:490000
Cons ci ratio: 2.148217e-02	ci left: 6.294669e-02	ci right 6.431562e-02	k: 31178	n:490000
KS ci ratio: 1.076672e-01	ci left: 2.552662e-03	ci right 2.845104e-03	k: 1321	n:490000
PRSSL1   490000 perm   176 sec   (2792 perm/sec)   p_kst 2.695918e-03   p_cons 6.362857e-02   p_joint 3.000000e-04

Joint ci ratio: 3.189566e-01	ci left: 2.539179e-04	ci right 3.520252e-04	k: 150	n:500000
Cons ci ratio: 2.127459e-02	ci left: 6.290719e-02	ci right 6.426187e-02	k: 31791	n:500000
KS ci ratio: 1.065447e-01	ci left: 2.556109e-03	ci right 2.845702e-03	k: 1349	n:500000
PRSSL1   500000 perm   181 sec   (2763 perm/sec)   p_kst 2.698000e-03   p_cons 6.358200e-02   p_joint 3.000000e-04

Joint ci ratio: 3.168654e-01	ci left: 2.525478e-04	ci right 3.493562e-04	k: 152	n:510000
Cons ci ratio: 2.105626e-02	ci left: 6.296295e-02	ci right 6.430475e-02	k: 32452	n:510000
KS ci ratio: 1.054949e-01	ci left: 2.557526e-03	ci right 2.844248e-03	k: 1376	n:510000
PRSSL1   510000 perm   187 sec   (2734 perm/sec)   p_kst 2.698039e-03   p_cons 6.363137e-02   p_joint 2.980392e-04

Joint ci ratio: 3.138038e-01	ci left: 2.530038e-04	ci right 3.488621e-04	k: 155	n:520000
Cons ci ratio: 2.084788e-02	ci left: 6.299750e-02	ci right 6.432659e-02	k: 33103	n:520000
KS ci ratio: 1.045130e-01	ci left: 2.557030e-03	ci right 2.840864e-03	k: 1402	n:520000
PRSSL1   520000 perm   192 sec   (2703 perm/sec)   p_kst 2.696154e-03   p_cons 6.365962e-02   p_joint 2.980769e-04

Joint ci ratio: 3.138047e-01	ci left: 2.482301e-04	ci right 3.422800e-04	k: 155	n:530000
Cons ci ratio: 2.063969e-02	ci left: 6.306461e-02	ci right 6.438167e-02	k: 33772	n:530000
KS ci ratio: 1.034491e-01	ci left: 2.562078e-03	ci right 2.843402e-03	k: 1431	n:530000
PRSSL1   530000 perm   198 sec   (2675 perm/sec)   p_kst 2.700000e-03   p_cons 6.372075e-02   p_joint 2.924528e-04

Joint ci ratio: 3.138056e-01	ci left: 2.436331e-04	ci right 3.359416e-04	k: 155	n:540000
Cons ci ratio: 2.043571e-02	ci left: 6.314035e-02	ci right 6.444581e-02	k: 34447	n:540000
KS ci ratio: 1.027348e-01	ci left: 2.550714e-03	ci right 2.828739e-03	k: 1451	n:540000
PRSSL1   540000 perm   204 sec   (2646 perm/sec)   p_kst 2.687037e-03   p_cons 6.379074e-02   p_joint 2.870370e-04

Joint ci ratio: 3.108310e-01	ci left: 2.442305e-04	ci right 3.357142e-04	k: 158	n:550000
Cons ci ratio: 2.024813e-02	ci left: 6.315188e-02	ci right 6.444545e-02	k: 35088	n:550000
KS ci ratio: 1.017238e-01	ci left: 2.555717e-03	ci right 2.831381e-03	k: 1480	n:550000
PRSSL1   550000 perm   210 sec   (2620 perm/sec)   p_kst 2.690909e-03   p_cons 6.379636e-02   p_joint 2.872727e-04

Joint ci ratio: 3.079395e-01	ci left: 2.448106e-04	ci right 3.354911e-04	k: 161	n:560000
Cons ci ratio: 2.007373e-02	ci left: 6.311505e-02	ci right 6.439661e-02	k: 35702	n:560000
KS ci ratio: 1.009097e-01	ci left: 2.551850e-03	ci right 2.824764e-03	k: 1504	n:560000
PRSSL1   560000 perm   216 sec   (2595 perm/sec)   p_kst 2.685714e-03   p_cons 6.375357e-02   p_joint 2.875000e-04

Joint ci ratio: 3.069939e-01	ci left: 2.421346e-04	ci right 3.314947e-04	k: 162	n:570000
Cons ci ratio: 1.990961e-02	ci left: 6.304464e-02	ci right 6.431418e-02	k: 36296	n:570000
KS ci ratio: 1.002135e-01	ci left: 2.542995e-03	ci right 2.812976e-03	k: 1525	n:570000
PRSSL1   570000 perm   222 sec   (2570 perm/sec)   p_kst 2.675439e-03   p_cons 6.367719e-02   p_joint 2.842105e-04

Joint ci ratio: 3.060570e-01	ci left: 2.395514e-04	ci right 3.276357e-04	k: 163	n:580000
Cons ci ratio: 1.973032e-02	ci left: 6.309169e-02	ci right 6.435061e-02	k: 36957	n:580000
KS ci ratio: 9.917858e-02	ci left: 2.552948e-03	ci right 2.821023e-03	k: 1557	n:580000
PRSSL1   580000 perm   228 sec   (2545 perm/sec)   p_kst 2.684483e-03   p_cons 6.371897e-02   p_joint 2.810345e-04

Joint ci ratio: 3.032955e-01	ci left: 2.401873e-04	ci right 3.275548e-04	k: 166	n:590000
Cons ci ratio: 1.955941e-02	ci left: 6.311525e-02	ci right 6.436361e-02	k: 37605	n:590000
KS ci ratio: 9.845485e-02	ci left: 2.547697e-03	ci right 2.813156e-03	k: 1580	n:590000
PRSSL1   590000 perm   234 sec   (2522 perm/sec)   p_kst 2.677966e-03   p_cons 6.373729e-02   p_joint 2.813559e-04

Joint ci ratio: 2.997269e-01	ci left: 2.423466e-04	ci right 3.292649e-04	k: 170	n:600000
Cons ci ratio: 1.938528e-02	ci left: 6.318454e-02	ci right 6.442301e-02	k: 38281	n:600000
KS ci ratio: 9.744264e-02	ci left: 2.558889e-03	ci right 2.822616e-03	k: 1613	n:600000
PRSSL1   600000 perm   240 sec   (2497 perm/sec)   p_kst 2.688333e-03   p_cons 6.380167e-02   p_joint 2.833333e-04

Joint ci ratio: 2.971318e-01	ci left: 2.429236e-04	ci right 3.291522e-04	k: 173	n:610000
Cons ci ratio: 1.922679e-02	ci left: 6.318305e-02	ci right 6.441126e-02	k: 38915	n:610000
KS ci ratio: 9.657868e-02	ci left: 2.563328e-03	ci right 2.825038e-03	k: 1642	n:610000
PRSSL1   610000 perm   246 sec   (2476 perm/sec)   p_kst 2.691803e-03   p_cons 6.379508e-02   p_joint 2.836066e-04

Joint ci ratio: 2.618685e-01	ci left: 3.140228e-04	ci right 4.101016e-04	k: 223	n:620000
Cons ci ratio: 1.906620e-02	ci left: 6.321858e-02	ci right 6.443711e-02	k: 39572	n:620000
KS ci ratio: 9.588116e-02	ci left: 2.559761e-03	ci right 2.819114e-03	k: 1666	n:620000
PRSSL1   620000 perm   253 sec   (2454 perm/sec)   p_kst 2.687097e-03   p_cons 6.382581e-02   p_joint 3.596774e-04

Joint ci ratio: 1.821107e-01	ci left: 6.680009e-04	ci right 8.033249e-04	k: 462	n:630000
Cons ci ratio: 1.892692e-02	ci left: 6.314399e-02	ci right 6.435209e-02	k: 40160	n:630000
KS ci ratio: 9.491754e-02	ci left: 2.571812e-03	ci right 2.829620e-03	k: 1700	n:630000
PRSSL1   630000 perm   259 sec   (2433 perm/sec)   p_kst 2.698413e-03   p_cons 6.374603e-02   p_joint 7.333333e-04

Joint ci ratio: 1.801750e-01	ci left: 6.724801e-04	ci right 8.071055e-04	k: 472	n:640000
Cons ci ratio: 1.877097e-02	ci left: 6.319621e-02	ci right 6.439524e-02	k: 40828	n:640000
KS ci ratio: 9.409122e-02	ci left: 2.577395e-03	ci right 2.833390e-03	k: 1730	n:640000
PRSSL1   640000 perm   265 sec   (2412 perm/sec)   p_kst 2.703125e-03   p_cons 6.379375e-02   p_joint 7.375000e-04

Joint ci ratio: 2.545847e-01	ci left: 3.182354e-04	ci right 4.124651e-04	k: 236	n:650000
Cons ci ratio: 1.861714e-02	ci left: 6.325759e-02	ci right 6.444784e-02	k: 41503	n:650000
KS ci ratio: 9.341918e-02	ci left: 2.575302e-03	ci right 2.829162e-03	k: 1755	n:650000
PRSSL1   650000 perm   272 sec   (2390 perm/sec)   p_kst 2.700000e-03   p_cons 6.385077e-02   p_joint 3.630769e-04

Joint ci ratio: 2.529887e-01	ci left: 3.176700e-04	ci right 4.110497e-04	k: 239	n:660000
Cons ci ratio: 1.848061e-02	ci left: 6.322964e-02	ci right 6.441055e-02	k: 42120	n:660000
KS ci ratio: 9.273524e-02	ci left: 2.574759e-03	ci right 2.826607e-03	k: 1781	n:660000
PRSSL1   660000 perm   279 sec   (2369 perm/sec)   p_kst 2.698485e-03   p_cons 6.381818e-02   p_joint 3.621212e-04

Joint ci ratio: 2.498840e-01	ci left: 3.213197e-04	ci right 4.144328e-04	k: 245	n:670000
Cons ci ratio: 1.834222e-02	ci left: 6.323377e-02	ci right 6.440582e-02	k: 42758	n:670000
KS ci ratio: 9.178655e-02	ci left: 2.590281e-03	ci right 2.840916e-03	k: 1818	n:670000
PRSSL1   670000 perm   285 sec   (2348 perm/sec)   p_kst 2.713433e-03   p_cons 6.381791e-02   p_joint 3.656716e-04

Joint ci ratio: 2.478768e-01	ci left: 3.221099e-04	ci right 4.145867e-04	k: 249	n:680000
Cons ci ratio: 1.820801e-02	ci left: 6.323049e-02	ci right 6.439382e-02	k: 43391	n:680000
KS ci ratio: 9.121199e-02	ci left: 2.585237e-03	ci right 2.833735e-03	k: 1841	n:680000
PRSSL1   680000 perm   292 sec   (2327 perm/sec)   p_kst 2.707353e-03   p_cons 6.381029e-02   p_joint 3.661765e-04

Joint ci ratio: 2.449544e-01	ci left: 3.256004e-04	ci right 4.178096e-04	k: 255	n:690000
Cons ci ratio: 1.807540e-02	ci left: 6.323599e-02	ci right 6.439086e-02	k: 44030	n:690000
KS ci ratio: 9.047798e-02	ci left: 2.590261e-03	ci right 2.837132e-03	k: 1871	n:690000
PRSSL1   690000 perm   299 sec   (2305 perm/sec)   p_kst 2.711594e-03   p_cons 6.381159e-02   p_joint 3.695652e-04

Joint ci ratio: 2.430628e-01	ci left: 3.263139e-04	ci right 4.179039e-04	k: 259	n:700000
Cons ci ratio: 1.794521e-02	ci left: 6.324422e-02	ci right 6.439083e-02	k: 44671	n:700000
KS ci ratio: 8.997512e-02	ci left: 2.582580e-03	ci right 2.827279e-03	k: 1892	n:700000
PRSSL1   700000 perm   306 sec   (2285 perm/sec)   p_kst 2.702857e-03   p_cons 6.381571e-02   p_joint 3.700000e-04

Joint ci ratio: 2.416726e-01	ci left: 3.256867e-04	ci right 4.164994e-04	k: 262	n:710000
Cons ci ratio: 1.782220e-02	ci left: 6.322278e-02	ci right 6.436106e-02	k: 45291	n:710000
KS ci ratio: 8.938694e-02	ci left: 2.580627e-03	ci right 2.823459e-03	k: 1917	n:710000
PRSSL1   710000 perm   313 sec   (2265 perm/sec)   p_kst 2.700000e-03   p_cons 6.379014e-02   p_joint 3.690141e-04

Joint ci ratio: 2.394074e-01	ci left: 3.276893e-04	ci right 4.180768e-04	k: 267	n:720000
Cons ci ratio: 1.768729e-02	ci left: 6.329879e-02	ci right 6.442973e-02	k: 45981	n:720000
KS ci ratio: 8.851373e-02	ci left: 2.596390e-03	ci right 2.838195e-03	k: 1955	n:720000
PRSSL1   720000 perm   320 sec   (2247 perm/sec)   p_kst 2.715278e-03   p_cons 6.386250e-02   p_joint 3.708333e-04

Joint ci ratio: 2.367713e-01	ci left: 3.309293e-04	ci right 4.210582e-04	k: 273	n:730000
Cons ci ratio: 1.756365e-02	ci left: 6.331681e-02	ci right 6.444008e-02	k: 46630	n:730000
KS ci ratio: 8.788686e-02	ci left: 2.598333e-03	ci right 2.838517e-03	k: 1983	n:730000
PRSSL1   730000 perm   328 sec   (2228 perm/sec)   p_kst 2.716438e-03   p_cons 6.387671e-02   p_joint 3.739726e-04

Joint ci ratio: 2.329751e-01	ci left: 3.379040e-04	ci right 4.282445e-04	k: 282	n:740000
Cons ci ratio: 1.744689e-02	ci left: 6.330476e-02	ci right 6.442028e-02	k: 47257	n:740000
KS ci ratio: 8.722967e-02	ci left: 2.602873e-03	ci right 2.841586e-03	k: 2013	n:740000
PRSSL1   740000 perm   335 sec   (2210 perm/sec)   p_kst 2.720270e-03   p_cons 6.386081e-02   p_joint 3.810811e-04

Joint ci ratio: 2.100852e-01	ci left: 4.152710e-04	ci right 5.139873e-04	k: 347	n:750000
Cons ci ratio: 1.732702e-02	ci left: 6.333024e-02	ci right 6.443846e-02	k: 47912	n:750000
KS ci ratio: 8.665079e-02	ci left: 2.603386e-03	ci right 2.840481e-03	k: 2040	n:750000
PRSSL1   750000 perm   342 sec   (2192 perm/sec)   p_kst 2.720000e-03   p_cons 6.388267e-02   p_joint 4.626667e-04

Joint ci ratio: 2.578777e-01	ci left: 2.647862e-04	ci right 3.443671e-04	k: 230	n:760000
Cons ci ratio: 1.721452e-02	ci left: 6.332100e-02	ci right 6.442180e-02	k: 48541	n:760000
KS ci ratio: 8.618783e-02	ci left: 2.597452e-03	ci right 2.832680e-03	k: 2062	n:760000
PRSSL1   760000 perm   350 sec   (2174 perm/sec)   p_kst 2.713158e-03   p_cons 6.386974e-02   p_joint 3.026316e-04

Joint ci ratio: 2.540564e-01	ci left: 2.698553e-04	ci right 3.495675e-04	k: 237	n:770000
Cons ci ratio: 1.710194e-02	ci left: 6.332755e-02	ci right 6.442119e-02	k: 49182	n:770000
KS ci ratio: 8.560878e-02	ci left: 2.599301e-03	ci right 2.833036e-03	k: 2090	n:770000
PRSSL1   770000 perm   357 sec   (2157 perm/sec)   p_kst 2.714286e-03   p_cons 6.387273e-02   p_joint 3.077922e-04

Joint ci ratio: 2.514288e-01	ci left: 2.723999e-04	ci right 3.519012e-04	k: 242	n:780000
Cons ci ratio: 1.699355e-02	ci left: 6.331990e-02	ci right 6.440641e-02	k: 49812	n:780000
KS ci ratio: 8.500103e-02	ci left: 2.603618e-03	ci right 2.835997e-03	k: 2120	n:780000
PRSSL1   780000 perm   365 sec   (2139 perm/sec)   p_kst 2.717949e-03   p_cons 6.386154e-02   p_joint 3.102564e-04

Joint ci ratio: 2.509134e-01	ci left: 2.701379e-04	ci right 3.487922e-04	k: 243	n:790000
Cons ci ratio: 1.688398e-02	ci left: 6.333517e-02	ci right 6.441487e-02	k: 50460	n:790000
KS ci ratio: 8.454410e-02	ci left: 2.599158e-03	ci right 2.829829e-03	k: 2143	n:790000
PRSSL1   790000 perm   372 sec   (2122 perm/sec)   p_kst 2.712658e-03   p_cons 6.387342e-02   p_joint 3.075949e-04

Joint ci ratio: 2.498915e-01	ci left: 2.691043e-04	ci right 3.470889e-04	k: 245	n:800000
Cons ci ratio: 1.677195e-02	ci left: 6.338245e-02	ci right 6.445571e-02	k: 51134	n:800000
KS ci ratio: 8.403614e-02	ci left: 2.598483e-03	ci right 2.827641e-03	k: 2169	n:800000
PRSSL1   800000 perm   380 sec   (2105 perm/sec)   p_kst 2.711250e-03   p_cons 6.391750e-02   p_joint 3.062500e-04

Joint ci ratio: 2.488820e-01	ci left: 2.680968e-04	ci right 3.454270e-04	k: 247	n:810000
Cons ci ratio: 1.667140e-02	ci left: 6.336217e-02	ci right 6.442860e-02	k: 51754	n:810000
KS ci ratio: 8.344204e-02	ci left: 2.603874e-03	ci right 2.831805e-03	k: 2200	n:810000
PRSSL1   810000 perm   388 sec   (2088 perm/sec)   p_kst 2.716049e-03   p_cons 6.389383e-02   p_joint 3.049383e-04

Joint ci ratio: 2.468987e-01	ci left: 2.694024e-04	ci right 3.463949e-04	k: 251	n:820000
Cons ci ratio: 1.656689e-02	ci left: 6.338372e-02	ci right 6.444376e-02	k: 52408	n:820000
KS ci ratio: 8.276746e-02	ci left: 2.615110e-03	ci right 2.842084e-03	k: 2236	n:820000
PRSSL1   820000 perm   396 sec   (2072 perm/sec)   p_kst 2.726829e-03   p_cons 6.391220e-02   p_joint 3.060976e-04

Joint ci ratio: 2.444849e-01	ci left: 2.718099e-04	ci right 3.486156e-04	k: 256	n:830000
Cons ci ratio: 1.646813e-02	ci left: 6.337716e-02	ci right 6.443071e-02	k: 53039	n:830000
KS ci ratio: 8.227246e-02	ci left: 2.615461e-03	ci right 2.841044e-03	k: 2263	n:830000
PRSSL1   830000 perm   404 sec   (2057 perm/sec)   p_kst 2.726506e-03   p_cons 6.390241e-02   p_joint 3.084337e-04

Joint ci ratio: 2.426041e-01	ci left: 2.730454e-04	ci right 3.495173e-04	k: 260	n:840000
Cons ci ratio: 1.636787e-02	ci left: 6.339449e-02	ci right 6.444185e-02	k: 53690	n:840000
KS ci ratio: 8.180414e-02	ci left: 2.614642e-03	ci right 2.838809e-03	k: 2289	n:840000
PRSSL1   840000 perm   412 sec   (2040 perm/sec)   p_kst 2.725000e-03   p_cons 6.391667e-02   p_joint 3.095238e-04

Joint ci ratio: 2.412217e-01	ci left: 2.731486e-04	ci right 3.491483e-04	k: 263	n:850000
Cons ci ratio: 1.627053e-02	ci left: 6.340323e-02	ci right 6.444445e-02	k: 54334	n:850000
KS ci ratio: 8.136134e-02	ci left: 2.612693e-03	ci right 2.835423e-03	k: 2314	n:850000
PRSSL1   850000 perm   420 sec   (2024 perm/sec)   p_kst 2.722353e-03   p_cons 6.392235e-02   p_joint 3.094118e-04

Joint ci ratio: 2.403133e-01	ci left: 2.721577e-04	ci right 3.475541e-04	k: 265	n:860000
Cons ci ratio: 1.617601e-02	ci left: 6.340368e-02	ci right 6.443880e-02	k: 54971	n:860000
KS ci ratio: 8.111706e-02	ci left: 2.598261e-03	ci right 2.819064e-03	k: 2328	n:860000
PRSSL1   860000 perm   428 sec   (2009 perm/sec)   p_kst 2.706977e-03   p_cons 6.391977e-02   p_joint 3.081395e-04

Joint ci ratio: 2.394151e-01	ci left: 2.711901e-04	ci right 3.459960e-04	k: 267	n:870000
Cons ci ratio: 1.608327e-02	ci left: 6.340298e-02	ci right 6.443211e-02	k: 55607	n:870000
KS ci ratio: 8.058236e-02	ci left: 2.603308e-03	ci right 2.823013e-03	k: 2359	n:870000
PRSSL1   870000 perm   437 sec   (1992 perm/sec)   p_kst 2.711494e-03   p_cons 6.391609e-02   p_joint 3.068966e-04

Joint ci ratio: 2.380862e-01	ci left: 2.713136e-04	ci right 3.456769e-04	k: 270	n:880000
Cons ci ratio: 1.599074e-02	ci left: 6.341251e-02	ci right 6.443581e-02	k: 56252	n:880000
KS ci ratio: 8.000778e-02	ci left: 2.611586e-03	ci right 2.830345e-03	k: 2393	n:880000
PRSSL1   880000 perm   445 sec   (1978 perm/sec)   p_kst 2.719318e-03   p_cons 6.392273e-02   p_joint 3.068182e-04

Joint ci ratio: 2.363482e-01	ci left: 2.724924e-04	ci right 3.465538e-04	k: 274	n:890000
Cons ci ratio: 1.589830e-02	ci left: 6.343304e-02	ci right 6.445070e-02	k: 56907	n:890000
KS ci ratio: 7.942891e-02	ci left: 2.620784e-03	ci right 2.838652e-03	k: 2428	n:890000
PRSSL1   890000 perm   453 sec   (1964 perm/sec)   p_kst 2.728090e-03   p_cons 6.394045e-02   p_joint 3.078652e-04

Joint ci ratio: 2.354936e-01	ci left: 2.715556e-04	ci right 3.450566e-04	k: 276	n:900000
Cons ci ratio: 1.581610e-02	ci left: 6.338781e-02	ci right 6.439944e-02	k: 57503	n:900000
KS ci ratio: 7.899112e-02	ci left: 2.621070e-03	ci right 2.837706e-03	k: 2455	n:900000
PRSSL1   900000 perm   462 sec   (1949 perm/sec)   p_kst 2.727778e-03   p_cons 6.389222e-02   p_joint 3.066667e-04

Joint ci ratio: 2.329834e-01	ci left: 2.747780e-04	ci right 3.482443e-04	k: 282	n:910000
Cons ci ratio: 1.573112e-02	ci left: 6.337425e-02	ci right 6.438018e-02	k: 58127	n:910000
KS ci ratio: 7.848129e-02	ci left: 2.626740e-03	ci right 2.842379e-03	k: 2487	n:910000
PRSSL1   910000 perm   470 sec   (1935 perm/sec)   p_kst 2.732967e-03   p_cons 6.387582e-02   p_joint 3.098901e-04

Joint ci ratio: 2.321647e-01	ci left: 2.738385e-04	ci right 3.467594e-04	k: 284	n:920000
Cons ci ratio: 1.564479e-02	ci left: 6.338157e-02	ci right 6.438205e-02	k: 58770	n:920000
KS ci ratio: 7.809004e-02	ci left: 2.624830e-03	ci right 2.839189e-03	k: 2512	n:920000
PRSSL1   920000 perm   479 sec   (1921 perm/sec)   p_kst 2.730435e-03   p_cons 6.388043e-02   p_joint 3.086957e-04

Joint ci ratio: 2.289726e-01	ci left: 2.789995e-04	ci right 3.521288e-04	k: 292	n:930000
Cons ci ratio: 1.556238e-02	ci left: 6.336947e-02	ci right 6.436443e-02	k: 59395	n:930000
KS ci ratio: 7.759735e-02	ci left: 2.630345e-03	ci right 2.843738e-03	k: 2544	n:930000
PRSSL1   930000 perm   488 sec   (1907 perm/sec)   p_kst 2.735484e-03   p_cons 6.386559e-02   p_joint 3.139785e-04

Joint ci ratio: 2.278094e-01	ci left: 2.790403e-04	ci right 3.517566e-04	k: 295	n:940000
Cons ci ratio: 1.548802e-02	ci left: 6.330569e-02	ci right 6.429487e-02	k: 59971	n:940000
KS ci ratio: 7.717395e-02	ci left: 2.631574e-03	ci right 2.843849e-03	k: 2572	n:940000
PRSSL1   940000 perm   496 sec   (1894 perm/sec)   p_kst 2.736170e-03   p_cons 6.379894e-02   p_joint 3.138298e-04

Joint ci ratio: 2.259091e-01	ci left: 2.810671e-04	ci right 3.536155e-04	k: 300	n:950000
Cons ci ratio: 1.540941e-02	ci left: 6.328418e-02	ci right 6.426796e-02	k: 60586	n:950000
KS ci ratio: 7.658047e-02	ci left: 2.645170e-03	ci right 2.856828e-03	k: 2612	n:950000
PRSSL1   950000 perm   505 sec   (1880 perm/sec)   p_kst 2.749474e-03   p_cons 6.377474e-02   p_joint 3.157895e-04

Joint ci ratio: 2.244228e-01	ci left: 2.820710e-04	ci right 3.543333e-04	k: 304	n:960000
Cons ci ratio: 1.533560e-02	ci left: 6.323510e-02	ci right 6.421337e-02	k: 61174	n:960000
KS ci ratio: 7.630390e-02	ci left: 2.637029e-03	ci right 2.847239e-03	k: 2631	n:960000
PRSSL1   960000 perm   514 sec   (1867 perm/sec)   p_kst 2.740625e-03   p_cons 6.372292e-02   p_joint 3.166667e-04

Joint ci ratio: 2.244231e-01	ci left: 2.791630e-04	ci right 3.506805e-04	k: 304	n:970000
Cons ci ratio: 1.525585e-02	ci left: 6.324149e-02	ci right 6.421472e-02	k: 61815	n:970000
KS ci ratio: 7.610230e-02	ci left: 2.624000e-03	ci right 2.832595e-03	k: 2645	n:970000
PRSSL1   970000 perm   523 sec   (1854 perm/sec)   p_kst 2.726804e-03   p_cons 6.372680e-02   p_joint 3.134021e-04

Joint ci ratio: 2.236911e-01	ci left: 2.782407e-04	ci right 3.492573e-04	k: 306	n:980000
Cons ci ratio: 1.518383e-02	ci left: 6.319693e-02	ci right 6.416484e-02	k: 62406	n:980000
KS ci ratio: 7.577385e-02	ci left: 2.620248e-03	ci right 2.827606e-03	k: 2668	n:980000
PRSSL1   980000 perm   532 sec   (1841 perm/sec)   p_kst 2.722449e-03   p_cons 6.367959e-02   p_joint 3.122449e-04

Joint ci ratio: 2.222478e-01	ci left: 2.792450e-04	ci right 3.499951e-04	k: 310	n:990000
Cons ci ratio: 1.511025e-02	ci left: 6.317340e-02	ci right 6.413622e-02	k: 63017	n:990000
KS ci ratio: 7.553407e-02	ci left: 2.610627e-03	ci right 2.816542e-03	k: 2685	n:990000
PRSSL1   990000 perm   541 sec   (1828 perm/sec)   p_kst 2.712121e-03   p_cons 6.365354e-02   p_joint 3.131313e-04

Joint ci ratio: 2.208321e-01	ci left: 2.802306e-04	ci right 3.507167e-04	k: 314	n:1000000
Cons ci ratio: 1.504177e-02	ci left: 6.311847e-02	ci right 6.407606e-02	k: 63596	n:1000000
KS ci ratio: 7.511564e-02	ci left: 2.613956e-03	ci right 2.818941e-03	k: 2715	n:1000000
PRSSL1   1000000 perm   551 sec   (1816 perm/sec)   p_kst 2.715000e-03   p_cons 6.359600e-02   p_joint 3.140000e-04

Joint ci ratio: 2.194431e-01	ci left: 2.811981e-04	ci right 3.514227e-04	k: 318	n:1010000
Cons ci ratio: 1.497147e-02	ci left: 6.308634e-02	ci right 6.403893e-02	k: 64197	n:1010000
KS ci ratio: 7.466321e-02	ci left: 2.620137e-03	ci right 2.824315e-03	k: 2748	n:1010000
PRSSL1   1010000 perm   560 sec   (1804 perm/sec)   p_kst 2.720792e-03   p_cons 6.356139e-02   p_joint 3.148515e-04

Joint ci ratio: 2.187585e-01	ci left: 2.802944e-04	ci right 3.500456e-04	k: 320	n:1020000
Cons ci ratio: 1.489675e-02	ci left: 6.309784e-02	ci right 6.404581e-02	k: 64842	n:1020000
KS ci ratio: 7.431266e-02	ci left: 2.619465e-03	ci right 2.822591e-03	k: 2774	n:1020000
PRSSL1   1020000 perm   569 sec   (1793 perm/sec)   p_kst 2.719608e-03   p_cons 6.357059e-02   p_joint 3.137255e-04

Joint ci ratio: 2.164112e-01	ci left: 2.839989e-04	ci right 3.538129e-04	k: 327	n:1030000
Cons ci ratio: 1.481915e-02	ci left: 6.314106e-02	ci right 6.408470e-02	k: 65520	n:1030000
KS ci ratio: 7.390089e-02	ci left: 2.623573e-03	ci right 2.825842e-03	k: 2805	n:1030000
PRSSL1   1030000 perm   578 sec   (1781 perm/sec)   p_kst 2.723301e-03   p_cons 6.361165e-02   p_joint 3.174757e-04

Joint ci ratio: 1.761489e-01	ci left: 4.340398e-04	ci right 5.187826e-04	k: 494	n:1040000
Cons ci ratio: 1.474252e-02	ci left: 6.318538e-02	ci right 6.412475e-02	k: 66200	n:1040000
KS ci ratio: 7.354790e-02	ci left: 2.623829e-03	ci right 2.825110e-03	k: 2832	n:1040000
PRSSL1   1040000 perm   588 sec   (1770 perm/sec)   p_kst 2.723077e-03   p_cons 6.365385e-02   p_joint 4.750000e-04

Joint ci ratio: 2.144586e-01	ci left: 2.839954e-04	ci right 3.530957e-04	k: 333	n:1050000
Cons ci ratio: 1.467127e-02	ci left: 6.319469e-02	ci right 6.412962e-02	k: 66844	n:1050000
KS ci ratio: 7.318709e-02	ci left: 2.625018e-03	ci right 2.825360e-03	k: 2860	n:1050000
PRSSL1   1050000 perm   597 sec   (1758 perm/sec)   p_kst 2.723810e-03   p_cons 6.366095e-02   p_joint 3.171429e-04

Joint ci ratio: 2.131858e-01	ci left: 2.848877e-04	ci right 3.537400e-04	k: 337	n:1060000
Cons ci ratio: 1.460556e-02	ci left: 6.316717e-02	ci right 6.409748e-02	k: 67449	n:1060000
KS ci ratio: 7.286948e-02	ci left: 2.623408e-03	ci right 2.822721e-03	k: 2885	n:1060000
PRSSL1   1060000 perm   607 sec   (1747 perm/sec)   p_kst 2.721698e-03   p_cons 6.363113e-02   p_joint 3.179245e-04

Joint ci ratio: 1.733691e-01	ci left: 4.361698e-04	ci right 5.198439e-04	k: 510	n:1070000
Cons ci ratio: 1.453992e-02	ci left: 6.314670e-02	ci right 6.407249e-02	k: 68061	n:1070000
KS ci ratio: 7.244377e-02	ci left: 2.630088e-03	ci right 2.828693e-03	k: 2919	n:1070000
PRSSL1   1070000 perm   617 sec   (1736 perm/sec)   p_kst 2.728037e-03   p_cons 6.360841e-02   p_joint 4.766355e-04

Joint ci ratio: 2.101001e-01	ci left: 2.883806e-04	ci right 3.569385e-04	k: 347	n:1080000
Cons ci ratio: 1.447257e-02	ci left: 6.314784e-02	ci right 6.406932e-02	k: 68696	n:1080000
KS ci ratio: 7.209889e-02	ci left: 2.631193e-03	ci right 2.828896e-03	k: 2947	n:1080000
PRSSL1   1080000 perm   626 sec   (1725 perm/sec)   p_kst 2.728704e-03   p_cons 6.360741e-02   p_joint 3.212963e-04

Joint ci ratio: 1.716972e-01	ci left: 4.369448e-04	ci right 5.198756e-04	k: 520	n:1090000
Cons ci ratio: 1.440405e-02	ci left: 6.316634e-02	ci right 6.408369e-02	k: 69350	n:1090000
KS ci ratio: 7.188009e-02	ci left: 2.623270e-03	ci right 2.819754e-03	k: 2965	n:1090000
PRSSL1   1090000 perm   636 sec   (1714 perm/sec)   p_kst 2.720183e-03   p_cons 6.362385e-02   p_joint 4.770642e-04

Joint ci ratio: 1.710419e-01	ci left: 4.364530e-04	ci right 5.189416e-04	k: 524	n:1100000
Cons ci ratio: 1.433758e-02	ci left: 6.317545e-02	ci right 6.408867e-02	k: 69994	n:1100000
KS ci ratio: 7.161515e-02	ci left: 2.619063e-03	ci right 2.814479e-03	k: 2987	n:1100000
PRSSL1   1100000 perm   646 sec   (1703 perm/sec)   p_kst 2.715455e-03   p_cons 6.363091e-02   p_joint 4.763636e-04

Joint ci ratio: 1.705554e-01	ci left: 4.351081e-04	ci right 5.170846e-04	k: 527	n:1110000
Cons ci ratio: 1.427720e-02	ci left: 6.314131e-02	ci right 6.405016e-02	k: 70590	n:1110000
KS ci ratio: 7.125823e-02	ci left: 2.622012e-03	ci right 2.816633e-03	k: 3017	n:1110000
PRSSL1   1110000 perm   656 sec   (1692 perm/sec)   p_kst 2.718018e-03   p_cons 6.359459e-02   p_joint 4.747748e-04

Joint ci ratio: 1.697536e-01	ci left: 4.354974e-04	ci right 5.171220e-04	k: 532	n:1120000
Cons ci ratio: 1.421235e-02	ci left: 6.315139e-02	ci right 6.405622e-02	k: 71235	n:1120000
KS ci ratio: 7.091826e-02	ci left: 2.624034e-03	ci right 2.817838e-03	k: 3046	n:1120000
PRSSL1   1120000 perm   666 sec   (1682 perm/sec)   p_kst 2.719643e-03   p_cons 6.360268e-02   p_joint 4.750000e-04

Joint ci ratio: 1.694362e-01	ci left: 4.333382e-04	ci right 5.143907e-04	k: 534	n:1130000
Cons ci ratio: 1.414565e-02	ci left: 6.318424e-02	ci right 6.408526e-02	k: 71906	n:1130000
KS ci ratio: 7.061765e-02	ci left: 2.623414e-03	ci right 2.816317e-03	k: 3072	n:1130000
PRSSL1   1130000 perm   676 sec   (1671 perm/sec)   p_kst 2.718584e-03   p_cons 6.363363e-02   p_joint 4.725664e-04

Joint ci ratio: 1.691206e-01	ci left: 4.312170e-04	ci right 5.117072e-04	k: 536	n:1140000
Cons ci ratio: 1.408392e-02	ci left: 6.318242e-02	ci right 6.407945e-02	k: 72538	n:1140000
KS ci ratio: 7.024133e-02	ci left: 2.628840e-03	ci right 2.821069e-03	k: 3105	n:1140000
PRSSL1   1140000 perm   686 sec   (1661 perm/sec)   p_kst 2.723684e-03   p_cons 6.362982e-02   p_joint 4.701754e-04

Joint ci ratio: 1.684942e-01	ci left: 4.307986e-04	ci right 5.108827e-04	k: 540	n:1150000
Cons ci ratio: 1.402566e-02	ci left: 6.315811e-02	ci right 6.405105e-02	k: 73144	n:1150000
KS ci ratio: 6.993801e-02	ci left: 2.629047e-03	ci right 2.820428e-03	k: 3132	n:1150000
PRSSL1   1150000 perm   696 sec   (1652 perm/sec)   p_kst 2.723478e-03   p_cons 6.360348e-02   p_joint 4.695652e-04

Joint ci ratio: 1.677210e-01	ci left: 4.312138e-04	ci right 5.109700e-04	k: 545	n:1160000
Cons ci ratio: 1.396498e-02	ci left: 6.316086e-02	ci right 6.404994e-02	k: 73781	n:1160000
KS ci ratio: 6.967176e-02	ci left: 2.626711e-03	ci right 2.817165e-03	k: 3156	n:1160000
PRSSL1   1160000 perm   706 sec   (1643 perm/sec)   p_kst 2.720690e-03   p_cons 6.360431e-02   p_joint 4.698276e-04

Joint ci ratio: 1.671100e-01	ci left: 4.308038e-04	ci right 5.101647e-04	k: 549	n:1170000
Cons ci ratio: 1.390587e-02	ci left: 6.315675e-02	ci right 6.404199e-02	k: 74410	n:1170000
KS ci ratio: 6.943042e-02	ci left: 2.622737e-03	ci right 2.812217e-03	k: 3178	n:1170000
PRSSL1   1170000 perm   717 sec   (1632 perm/sec)   p_kst 2.716239e-03   p_cons 6.359829e-02   p_joint 4.692308e-04

Joint ci ratio: 1.666562e-01	ci left: 4.295891e-04	ci right 5.084898e-04	k: 552	n:1180000
Cons ci ratio: 1.384367e-02	ci left: 6.318567e-02	ci right 6.406732e-02	k: 75078	n:1180000
KS ci ratio: 6.916991e-02	ci left: 2.620497e-03	ci right 2.809076e-03	k: 3202	n:1180000
PRSSL1   1180000 perm   728 sec   (1622 perm/sec)   p_kst 2.713559e-03   p_cons 6.362542e-02   p_joint 4.677966e-04

Joint ci ratio: 1.663559e-01	ci left: 4.275897e-04	ci right 5.059674e-04	k: 554	n:1190000
Cons ci ratio: 1.378570e-02	ci left: 6.318479e-02	ci right 6.406271e-02	k: 75711	n:1190000
KS ci ratio: 6.885883e-02	ci left: 2.622425e-03	ci right 2.810260e-03	k: 3231	n:1190000
PRSSL1   1190000 perm   738 sec   (1612 perm/sec)   p_kst 2.715126e-03   p_cons 6.362269e-02   p_joint 4.655462e-04

Joint ci ratio: 1.656115e-01	ci left: 4.280200e-04	ci right 5.060906e-04	k: 559	n:1200000
Cons ci ratio: 1.372739e-02	ci left: 6.319308e-02	ci right 6.406736e-02	k: 76355	n:1200000
KS ci ratio: 6.868934e-02	ci left: 2.613675e-03	ci right 2.800405e-03	k: 3247	n:1200000
PRSSL1   1200000 perm   749 sec   (1602 perm/sec)   p_kst 2.705833e-03   p_cons 6.362917e-02   p_joint 4.658333e-04

Joint ci ratio: 1.648771e-01	ci left: 4.284440e-04	ci right 5.062110e-04	k: 564	n:1210000
Cons ci ratio: 1.367191e-02	ci left: 6.318311e-02	ci right 6.405369e-02	k: 76977	n:1210000
KS ci ratio: 6.830113e-02	ci left: 2.622130e-03	ci right 2.808363e-03	k: 3284	n:1210000
PRSSL1   1210000 perm   760 sec   (1592 perm/sec)   p_kst 2.714050e-03   p_cons 6.361736e-02   p_joint 4.661157e-04

Joint ci ratio: 1.638649e-01	ci left: 4.304339e-04	ci right 5.080352e-04	k: 571	n:1220000
Cons ci ratio: 1.361924e-02	ci left: 6.315451e-02	ci right 6.402133e-02	k: 77576	n:1220000
KS ci ratio: 6.797073e-02	ci left: 2.626420e-03	ci right 2.812019e-03	k: 3316	n:1220000
PRSSL1   1220000 perm   771 sec   (1583 perm/sec)   p_kst 2.718033e-03   p_cons 6.358689e-02   p_joint 4.680328e-04

Joint ci ratio: 1.631534e-01	ci left: 4.308332e-04	ci right 5.081361e-04	k: 576	n:1230000
Cons ci ratio: 1.356283e-02	ci left: 6.316448e-02	ci right 6.402782e-02	k: 78222	n:1230000
KS ci ratio: 6.768563e-02	ci left: 2.627445e-03	ci right 2.812308e-03	k: 3344	n:1230000
PRSSL1   1230000 perm   782 sec   (1573 perm/sec)   p_kst 2.718699e-03   p_cons 6.359512e-02   p_joint 4.682927e-04

Joint ci ratio: 1.630124e-01	ci left: 4.281322e-04	ci right 5.048776e-04	k: 577	n:1240000
Cons ci ratio: 1.350647e-02	ci left: 6.317993e-02	ci right 6.403986e-02	k: 78875	n:1240000
KS ci ratio: 6.744420e-02	ci left: 2.625283e-03	ci right 2.809310e-03	k: 3368	n:1240000
PRSSL1   1240000 perm   793 sec   (1564 perm/sec)   p_kst 2.716129e-03   p_cons 6.360887e-02   p_joint 4.653226e-04

Joint ci ratio: 1.625911e-01	ci left: 4.270093e-04	ci right 5.033363e-04	k: 580	n:1250000
Cons ci ratio: 1.345479e-02	ci left: 6.316004e-02	ci right 6.401638e-02	k: 79484	n:1250000
KS ci ratio: 6.711614e-02	ci left: 2.630237e-03	ci right 2.813679e-03	k: 3401	n:1250000
PRSSL1   1250000 perm   804 sec   (1555 perm/sec)   p_kst 2.720800e-03   p_cons 6.358720e-02   p_joint 4.640000e-04

Joint ci ratio: 1.614830e-01	ci left: 4.297122e-04	ci right 5.059480e-04	k: 588	n:1260000
Cons ci ratio: 1.340155e-02	ci left: 6.315946e-02	ci right 6.401238e-02	k: 80117	n:1260000
KS ci ratio: 6.689052e-02	ci left: 2.627310e-03	ci right 2.809908e-03	k: 3424	n:1260000
PRSSL1   1260000 perm   815 sec   (1546 perm/sec)   p_kst 2.717460e-03   p_cons 6.358492e-02   p_joint 4.666667e-04

Joint ci ratio: 1.759788e-01	ci left: 3.561856e-04	ci right 4.256536e-04	k: 495	n:1270000
Cons ci ratio: 1.334417e-02	ci left: 6.320129e-02	ci right 6.405109e-02	k: 80804	n:1270000
KS ci ratio: 6.666715e-02	ci left: 2.624431e-03	ci right 2.806196e-03	k: 3447	n:1270000
PRSSL1   1270000 perm   826 sec   (1537 perm/sec)   p_kst 2.714173e-03   p_cons 6.362520e-02   p_joint 3.897638e-04

Joint ci ratio: 1.756252e-01	ci left: 3.548966e-04	ci right 4.239594e-04	k: 497	n:1280000
Cons ci ratio: 1.329397e-02	ci left: 6.318484e-02	ci right 6.403120e-02	k: 81417	n:1280000
KS ci ratio: 6.649406e-02	ci left: 2.617755e-03	ci right 2.798569e-03	k: 3465	n:1280000
PRSSL1   1280000 perm   838 sec   (1528 perm/sec)   p_kst 2.707031e-03   p_cons 6.360703e-02   p_joint 3.882813e-04

Joint ci ratio: 1.745765e-01	ci left: 3.565928e-04	ci right 4.255276e-04	k: 503	n:1290000
Cons ci ratio: 1.324148e-02	ci left: 6.319415e-02	ci right 6.403727e-02	k: 82063	n:1290000
KS ci ratio: 6.618908e-02	ci left: 2.621858e-03	ci right 2.802092e-03	k: 3497	n:1290000
PRSSL1   1290000 perm   849 sec   (1519 perm/sec)   p_kst 2.710853e-03   p_cons 6.361473e-02   p_joint 3.899225e-04

Joint ci ratio: 1.745768e-01	ci left: 3.538498e-04	ci right 4.222544e-04	k: 503	n:1300000
Cons ci ratio: 1.318936e-02	ci left: 6.320562e-02	ci right 6.404555e-02	k: 82712	n:1300000
KS ci ratio: 6.599145e-02	ci left: 2.617576e-03	ci right 2.796959e-03	k: 3518	n:1300000
PRSSL1   1300000 perm   860 sec   (1511 perm/sec)   p_kst 2.706154e-03   p_cons 6.362462e-02   p_joint 3.869231e-04

Joint ci ratio: 1.742315e-01	ci left: 3.526087e-04	ci right 4.206244e-04	k: 505	n:1310000
Cons ci ratio: 1.313583e-02	ci left: 6.323519e-02	ci right 6.407208e-02	k: 83385	n:1310000
KS ci ratio: 6.573974e-02	ci left: 2.617866e-03	ci right 2.796558e-03	k: 3545	n:1310000
PRSSL1   1310000 perm   872 sec   (1503 perm/sec)   p_kst 2.706107e-03   p_cons 6.365267e-02   p_joint 3.854962e-04

Joint ci ratio: 1.733770e-01	ci left: 3.535605e-04	ci right 4.213904e-04	k: 510	n:1320000
Cons ci ratio: 1.308270e-02	ci left: 6.326659e-02	ci right 6.410048e-02	k: 84061	n:1320000
KS ci ratio: 6.549088e-02	ci left: 2.618152e-03	ci right 2.796162e-03	k: 3572	n:1320000
PRSSL1   1320000 perm   883 sec   (1495 perm/sec)   p_kst 2.706061e-03   p_cons 6.368258e-02   p_joint 3.863636e-04

Joint ci ratio: 1.572674e-01	ci left: 4.301965e-04	ci right 5.043379e-04	k: 620	n:1330000
Cons ci ratio: 1.303391e-02	ci left: 6.326379e-02	ci right 6.409451e-02	k: 84692	n:1330000
KS ci ratio: 6.525392e-02	ci left: 2.617696e-03	ci right 2.795006e-03	k: 3598	n:1330000
PRSSL1   1330000 perm   895 sec   (1486 perm/sec)   p_kst 2.705263e-03   p_cons 6.367820e-02   p_joint 4.661654e-04

Joint ci ratio: 1.917035e-01	ci left: 2.820427e-04	ci right 3.425395e-04	k: 417	n:1340000
Cons ci ratio: 1.298533e-02	ci left: 6.326401e-02	ci right 6.409161e-02	k: 85327	n:1340000
KS ci ratio: 6.500153e-02	ci left: 2.618717e-03	ci right 2.795384e-03	k: 3626	n:1340000
PRSSL1   1340000 perm   907 sec   (1478 perm/sec)   p_kst 2.705970e-03   p_cons 6.367687e-02   p_joint 3.111940e-04

Joint ci ratio: 1.910192e-01	ci left: 2.820692e-04	ci right 3.423307e-04	k: 420	n:1350000
Cons ci ratio: 1.293841e-02	ci left: 6.325389e-02	ci right 6.407835e-02	k: 85948	n:1350000
KS ci ratio: 6.477871e-02	ci left: 2.617537e-03	ci right 2.793496e-03	k: 3651	n:1350000
PRSSL1   1350000 perm   918 sec   (1470 perm/sec)   p_kst 2.704444e-03   p_cons 6.366519e-02   p_joint 3.111111e-04

Joint ci ratio: 1.901181e-01	ci left: 2.827961e-04	ci right 3.428949e-04	k: 424	n:1360000
Cons ci ratio: 1.288795e-02	ci left: 6.328132e-02	ci right 6.410289e-02	k: 86620	n:1360000
KS ci ratio: 6.457578e-02	ci left: 2.614928e-03	ci right 2.790141e-03	k: 3674	n:1360000
PRSSL1   1360000 perm   931 sec   (1461 perm/sec)   p_kst 2.701471e-03   p_cons 6.369118e-02   p_joint 3.117647e-04

Joint ci ratio: 1.894507e-01	ci left: 2.828176e-04	ci right 3.426857e-04	k: 427	n:1370000
Cons ci ratio: 1.283909e-02	ci left: 6.329889e-02	ci right 6.411755e-02	k: 87279	n:1370000
KS ci ratio: 6.432244e-02	ci left: 2.616668e-03	ci right 2.791284e-03	k: 3703	n:1370000
PRSSL1   1370000 perm   943 sec   (1453 perm/sec)   p_kst 2.702920e-03   p_cons 6.370730e-02   p_joint 3.116788e-04

Joint ci ratio: 1.890097e-01	ci left: 2.821488e-04	ci right 3.417204e-04	k: 429	n:1380000
Cons ci ratio: 1.279381e-02	ci left: 6.328804e-02	ci right 6.410365e-02	k: 87899	n:1380000
KS ci ratio: 6.404627e-02	ci left: 2.620523e-03	ci right 2.794618e-03	k: 3735	n:1380000
PRSSL1   1380000 perm   956 sec   (1443 perm/sec)   p_kst 2.706522e-03   p_cons 6.369493e-02   p_joint 3.108696e-04

Joint ci ratio: 1.883538e-01	ci left: 2.821753e-04	ci right 3.415220e-04	k: 432	n:1390000
Cons ci ratio: 1.274663e-02	ci left: 6.329958e-02	ci right 6.411231e-02	k: 88550	n:1390000
KS ci ratio: 6.379909e-02	ci left: 2.622200e-03	ci right 2.795709e-03	k: 3764	n:1390000
PRSSL1   1390000 perm   969 sec   (1435 perm/sec)   p_kst 2.707914e-03   p_cons 6.370504e-02   p_joint 3.107914e-04

Joint ci ratio: 1.881368e-01	ci left: 2.808404e-04	ci right 3.398305e-04	k: 433	n:1400000
Cons ci ratio: 1.270278e-02	ci left: 6.328461e-02	ci right 6.409434e-02	k: 89164	n:1400000
KS ci ratio: 6.361362e-02	ci left: 2.618934e-03	ci right 2.791705e-03	k: 3786	n:1400000
PRSSL1   1400000 perm   981 sec   (1427 perm/sec)   p_kst 2.704286e-03   p_cons 6.368857e-02   p_joint 3.092857e-04

Joint ci ratio: 1.872757e-01	ci left: 2.815522e-04	ci right 3.403904e-04	k: 437	n:1410000
Cons ci ratio: 1.265719e-02	ci left: 6.329037e-02	ci right 6.409724e-02	k: 89807	n:1410000
KS ci ratio: 6.332150e-02	ci left: 2.624789e-03	ci right 2.797122e-03	k: 3821	n:1410000
PRSSL1   1410000 perm   993 sec   (1420 perm/sec)   p_kst 2.709929e-03   p_cons 6.369291e-02   p_joint 3.099291e-04

Joint ci ratio: 1.866376e-01	ci left: 2.815832e-04	ci right 3.402047e-04	k: 440	n:1420000
Cons ci ratio: 1.261426e-02	ci left: 6.327569e-02	ci right 6.407962e-02	k: 90421	n:1420000
KS ci ratio: 6.309901e-02	ci left: 2.625018e-03	ci right 2.796738e-03	k: 3848	n:1420000
PRSSL1   1420000 perm   1005 sec   (1412 perm/sec)   p_kst 2.709859e-03   p_cons 6.367676e-02   p_joint 3.098592e-04

Joint ci ratio: 1.860060e-01	ci left: 2.816141e-04	ci right 3.400213e-04	k: 443	n:1430000
Cons ci ratio: 1.256939e-02	ci left: 6.328353e-02	ci right 6.408468e-02	k: 91067	n:1430000
KS ci ratio: 6.287073e-02	ci left: 2.625934e-03	ci right 2.797069e-03	k: 3876	n:1430000
PRSSL1   1430000 perm   1018 sec   (1405 perm/sec)   p_kst 2.710490e-03   p_cons 6.368322e-02   p_joint 3.097902e-04

Joint ci ratio: 1.855886e-01	ci left: 2.809828e-04	ci right 3.391135e-04	k: 445	n:1440000
Cons ci ratio: 1.252442e-02	ci left: 6.329680e-02	ci right 6.409523e-02	k: 91721	n:1440000
KS ci ratio: 6.264490e-02	ci left: 2.626837e-03	ci right 2.797395e-03	k: 3904	n:1440000
PRSSL1   1440000 perm   1031 sec   (1397 perm/sec)   p_kst 2.711111e-03   p_cons 6.369514e-02   p_joint 3.090278e-04

Joint ci ratio: 1.851739e-01	ci left: 2.803603e-04	ci right 3.382180e-04	k: 447	n:1450000
Cons ci ratio: 1.248209e-02	ci left: 6.328927e-02	ci right 6.408489e-02	k: 92345	n:1450000
KS ci ratio: 6.238969e-02	ci left: 2.630445e-03	ci right 2.800516e-03	k: 3936	n:1450000
PRSSL1   1450000 perm   1043 sec   (1390 perm/sec)   p_kst 2.714483e-03   p_cons 6.368621e-02   p_joint 3.082759e-04

Joint ci ratio: 1.841490e-01	ci left: 2.817064e-04	ci right 3.394842e-04	k: 452	n:1460000
Cons ci ratio: 1.244191e-02	ci left: 6.326546e-02	ci right 6.405819e-02	k: 92945	n:1460000
KS ci ratio: 6.212188e-02	ci left: 2.635354e-03	ci right 2.804984e-03	k: 3970	n:1460000
PRSSL1   1460000 perm   1056 sec   (1383 perm/sec)   p_kst 2.719178e-03   p_cons 6.366096e-02   p_joint 3.095890e-04

Joint ci ratio: 1.833413e-01	ci left: 2.823859e-04	ci right 3.400209e-04	k: 456	n:1470000
Cons ci ratio: 1.240048e-02	ci left: 6.325757e-02	ci right 6.404755e-02	k: 93568	n:1470000
KS ci ratio: 6.195839e-02	ci left: 2.631490e-03	ci right 2.800410e-03	k: 3991	n:1470000
PRSSL1   1470000 perm   1069 sec   (1376 perm/sec)   p_kst 2.714966e-03   p_cons 6.365170e-02   p_joint 3.102041e-04

Joint ci ratio: 1.829415e-01	ci left: 2.817673e-04	ci right 3.391367e-04	k: 458	n:1480000
Cons ci ratio: 1.235617e-02	ci left: 6.328146e-02	ci right 6.406890e-02	k: 94238	n:1480000
KS ci ratio: 6.175763e-02	ci left: 2.631006e-03	ci right 2.799328e-03	k: 4017	n:1480000
PRSSL1   1480000 perm   1081 sec   (1369 perm/sec)   p_kst 2.714189e-03   p_cons 6.367432e-02   p_joint 3.094595e-04

Joint ci ratio: 1.827427e-01	ci left: 2.805167e-04	ci right 3.375625e-04	k: 459	n:1490000
Cons ci ratio: 1.231400e-02	ci left: 6.328897e-02	ci right 6.407380e-02	k: 94884	n:1490000
KS ci ratio: 6.159700e-02	ci left: 2.627225e-03	ci right 2.794852e-03	k: 4038	n:1490000
PRSSL1   1490000 perm   1094 sec   (1362 perm/sec)   p_kst 2.710067e-03   p_cons 6.368054e-02   p_joint 3.080537e-04

Joint ci ratio: 1.821497e-01	ci left: 2.805552e-04	ci right 3.374033e-04	k: 462	n:1500000
Cons ci ratio: 1.227328e-02	ci left: 6.328642e-02	ci right 6.406860e-02	k: 95515	n:1500000
KS ci ratio: 6.134678e-02	ci left: 2.631372e-03	ci right 2.798558e-03	k: 4071	n:1500000
PRSSL1   1500000 perm   1107 sec   (1355 perm/sec)   p_kst 2.714000e-03   p_cons 6.367667e-02   p_joint 3.080000e-04

Joint ci ratio: 1.817576e-01	ci left: 2.799614e-04	ci right 3.365536e-04	k: 464	n:1510000
Cons ci ratio: 1.223432e-02	ci left: 6.327070e-02	ci right 6.405018e-02	k: 96126	n:1510000
KS ci ratio: 6.112198e-02	ci left: 2.633509e-03	ci right 2.800196e-03	k: 4101	n:1510000
PRSSL1   1510000 perm   1120 sec   (1348 perm/sec)   p_kst 2.715894e-03   p_cons 6.365960e-02   p_joint 3.072848e-04

Joint ci ratio: 1.804045e-01	ci left: 2.825161e-04	ci right 3.391532e-04	k: 471	n:1520000
Cons ci ratio: 1.219318e-02	ci left: 6.328011e-02	ci right 6.405708e-02	k: 96775	n:1520000
KS ci ratio: 6.084797e-02	ci left: 2.640154e-03	ci right 2.806486e-03	k: 4138	n:1520000
PRSSL1   1520000 perm   1133 sec   (1342 perm/sec)   p_kst 2.722368e-03   p_cons 6.366776e-02   p_joint 3.098684e-04

Joint ci ratio: 1.796449e-01	ci left: 2.831662e-04	ci right 3.396686e-04	k: 475	n:1530000
Cons ci ratio: 1.215105e-02	ci left: 6.330310e-02	ci right 6.407764e-02	k: 97445	n:1530000
KS ci ratio: 6.064318e-02	ci left: 2.640921e-03	ci right 2.806722e-03	k: 4166	n:1530000
PRSSL1   1530000 perm   1146 sec   (1335 perm/sec)   p_kst 2.722876e-03   p_cons 6.368954e-02   p_joint 3.104575e-04

Joint ci ratio: 1.794566e-01	ci left: 2.819476e-04	ci right 3.381415e-04	k: 476	n:1540000
Cons ci ratio: 1.211106e-02	ci left: 6.330895e-02	ci right 6.408100e-02	k: 98089	n:1540000
KS ci ratio: 6.049831e-02	ci left: 2.636562e-03	ci right 2.801680e-03	k: 4186	n:1540000
PRSSL1   1540000 perm   1159 sec   (1328 perm/sec)   p_kst 2.718182e-03   p_cons 6.369416e-02   p_joint 3.090909e-04

Joint ci ratio: 1.787088e-01	ci left: 2.825935e-04	ci right 3.386561e-04	k: 480	n:1550000
Cons ci ratio: 1.207297e-02	ci left: 6.329994e-02	ci right 6.406943e-02	k: 98710	n:1550000
KS ci ratio: 6.026835e-02	ci left: 2.639886e-03	ci right 2.804561e-03	k: 4218	n:1550000
PRSSL1   1550000 perm   1173 sec   (1322 perm/sec)   p_kst 2.721290e-03   p_cons 6.368387e-02   p_joint 3.096774e-04

Joint ci ratio: 1.781541e-01	ci left: 2.826192e-04	ci right 3.384941e-04	k: 483	n:1560000
Cons ci ratio: 1.203337e-02	ci left: 6.330959e-02	ci right 6.407665e-02	k: 99360	n:1560000
KS ci ratio: 5.996325e-02	ci left: 2.650114e-03	ci right 2.814561e-03	k: 4261	n:1560000
PRSSL1   1560000 perm   1186 sec   (1315 perm/sec)   p_kst 2.731410e-03   p_cons 6.369231e-02   p_joint 3.096154e-04

Joint ci ratio: 1.776045e-01	ci left: 2.826449e-04	ci right 3.383339e-04	k: 486	n:1570000
Cons ci ratio: 1.199350e-02	ci left: 6.332546e-02	ci right 6.409016e-02	k: 100020	n:1570000
KS ci ratio: 5.980918e-02	ci left: 2.647037e-03	ci right 2.810857e-03	k: 4283	n:1570000
PRSSL1   1570000 perm   1199 sec   (1309 perm/sec)   p_kst 2.728025e-03   p_cons 6.370701e-02   p_joint 3.095541e-04

Joint ci ratio: 1.770600e-01	ci left: 2.826704e-04	ci right 3.381755e-04	k: 489	n:1580000
Cons ci ratio: 1.195549e-02	ci left: 6.332663e-02	ci right 6.408890e-02	k: 100657	n:1580000
KS ci ratio: 5.952476e-02	ci left: 2.655846e-03	ci right 2.819403e-03	k: 4324	n:1580000
PRSSL1   1580000 perm   1213 sec   (1303 perm/sec)   p_kst 2.736709e-03   p_cons 6.370696e-02   p_joint 3.094937e-04

Joint ci ratio: 1.768798e-01	ci left: 2.814937e-04	ci right 3.367054e-04	k: 490	n:1590000
Cons ci ratio: 1.191747e-02	ci left: 6.333154e-02	ci right 6.409143e-02	k: 101300	n:1590000
KS ci ratio: 5.932616e-02	ci left: 2.657111e-03	ci right 2.820181e-03	k: 4353	n:1590000
PRSSL1   1590000 perm   1227 sec   (1296 perm/sec)   p_kst 2.737736e-03   p_cons 6.371069e-02   p_joint 3.081761e-04

Joint ci ratio: 1.754559e-01	ci left: 2.845139e-04	ci right 3.398211e-04	k: 498	n:1600000
Cons ci ratio: 1.188086e-02	ci left: 6.332580e-02	ci right 6.408328e-02	k: 101926	n:1600000
KS ci ratio: 5.908225e-02	ci left: 2.662671e-03	ci right 2.825387e-03	k: 4389	n:1600000
PRSSL1   1600000 perm   1240 sec   (1290 perm/sec)   p_kst 2.743125e-03   p_cons 6.370375e-02   p_joint 3.112500e-04

Joint ci ratio: 1.751054e-01	ci left: 2.839345e-04	ci right 3.390071e-04	k: 500	n:1610000
Cons ci ratio: 1.184440e-02	ci left: 6.332200e-02	ci right 6.407709e-02	k: 102555	n:1610000
KS ci ratio: 5.894156e-02	ci left: 2.658983e-03	ci right 2.821074e-03	k: 4410	n:1610000
PRSSL1   1610000 perm   1254 sec   (1284 perm/sec)   p_kst 2.739130e-03   p_cons 6.369876e-02   p_joint 3.105590e-04

Joint ci ratio: 1.740660e-01	ci left: 2.857237e-04	ci right 3.407799e-04	k: 506	n:1620000
Cons ci ratio: 1.180846e-02	ci left: 6.331640e-02	ci right 6.406911e-02	k: 103181	n:1620000
KS ci ratio: 5.878858e-02	ci left: 2.656558e-03	ci right 2.818067e-03	k: 4433	n:1620000
PRSSL1   1620000 perm   1268 sec   (1278 perm/sec)   p_kst 2.736420e-03   p_cons 6.369198e-02   p_joint 3.123457e-04

Joint ci ratio: 1.737238e-01	ci left: 2.851444e-04	ci right 3.399695e-04	k: 508	n:1630000
Cons ci ratio: 1.177127e-02	ci left: 6.332678e-02	ci right 6.407723e-02	k: 103833	n:1630000
KS ci ratio: 5.864997e-02	ci left: 2.652955e-03	ci right 2.813851e-03	k: 4454	n:1630000
PRSSL1   1630000 perm   1281 sec   (1272 perm/sec)   p_kst 2.732515e-03   p_cons 6.370123e-02   p_joint 3.116564e-04

Joint ci ratio: 1.730451e-01	ci left: 2.857389e-04	ci right 3.404413e-04	k: 512	n:1640000
Cons ci ratio: 1.173503e-02	ci left: 6.333095e-02	ci right 6.407912e-02	k: 104475	n:1640000
KS ci ratio: 5.841427e-02	ci left: 2.658408e-03	ci right 2.818965e-03	k: 4490	n:1640000
PRSSL1   1640000 perm   1295 sec   (1267 perm/sec)   p_kst 2.737805e-03   p_cons 6.370427e-02   p_joint 3.121951e-04

Joint ci ratio: 1.725413e-01	ci left: 2.857467e-04	ci right 3.402748e-04	k: 515	n:1650000
Cons ci ratio: 1.169995e-02	ci left: 6.332662e-02	ci right 6.407249e-02	k: 105103	n:1650000
KS ci ratio: 5.822655e-02	ci left: 2.659616e-03	ci right 2.819713e-03	k: 4519	n:1650000
PRSSL1   1650000 perm   1309 sec   (1261 perm/sec)   p_kst 2.738788e-03   p_cons 6.369879e-02   p_joint 3.121212e-04

Joint ci ratio: 1.723745e-01	ci left: 2.846017e-04	ci right 3.388533e-04	k: 516	n:1660000
Cons ci ratio: 1.166548e-02	ci left: 6.331934e-02	ci right 6.406291e-02	k: 105726	n:1660000
KS ci ratio: 5.806623e-02	ci left: 2.658436e-03	ci right 2.818006e-03	k: 4544	n:1660000
PRSSL1   1660000 perm   1323 sec   (1255 perm/sec)   p_kst 2.737349e-03   p_cons 6.369036e-02   p_joint 3.108434e-04

Joint ci ratio: 1.722081e-01	ci left: 2.834705e-04	ci right 3.374489e-04	k: 517	n:1670000
Cons ci ratio: 1.163161e-02	ci left: 6.330916e-02	ci right 6.405044e-02	k: 106344	n:1670000
KS ci ratio: 5.789453e-02	ci left: 2.658450e-03	ci right 2.817534e-03	k: 4571	n:1670000
PRSSL1   1670000 perm   1337 sec   (1249 perm/sec)   p_kst 2.737126e-03   p_cons 6.367904e-02   p_joint 3.095808e-04

Joint ci ratio: 1.718767e-01	ci left: 2.829223e-04	ci right 3.366820e-04	k: 519	n:1680000
Cons ci ratio: 1.159936e-02	ci left: 6.328545e-02	ci right 6.402439e-02	k: 106939	n:1680000
KS ci ratio: 5.773693e-02	ci left: 2.657292e-03	ci right 2.815859e-03	k: 4596	n:1680000
PRSSL1   1680000 perm   1351 sec   (1244 perm/sec)   p_kst 2.735714e-03   p_cons 6.365417e-02   p_joint 3.089286e-04

Joint ci ratio: 1.712194e-01	ci left: 2.835135e-04	ci right 3.371581e-04	k: 523	n:1690000
Cons ci ratio: 1.156267e-02	ci left: 6.331042e-02	ci right 6.404729e-02	k: 107616	n:1690000
KS ci ratio: 5.759936e-02	ci left: 2.654398e-03	ci right 2.812402e-03	k: 4618	n:1690000
PRSSL1   1690000 perm   1366 sec   (1237 perm/sec)   p_kst 2.732544e-03   p_cons 6.367811e-02   p_joint 3.094675e-04

Joint ci ratio: 1.705696e-01	ci left: 2.840981e-04	ci right 3.376283e-04	k: 527	n:1700000
Cons ci ratio: 1.152564e-02	ci left: 6.334214e-02	ci right 6.407700e-02	k: 108305	n:1700000
KS ci ratio: 5.746898e-02	ci left: 2.650959e-03	ci right 2.808390e-03	k: 4639	n:1700000
PRSSL1   1700000 perm   1380 sec   (1231 perm/sec)   p_kst 2.728824e-03   p_cons 6.370882e-02   p_joint 3.100000e-04

Joint ci ratio: 1.700870e-01	ci left: 2.841163e-04	ci right 3.374830e-04	k: 530	n:1710000
Cons ci ratio: 1.149178e-02	ci left: 6.334432e-02	ci right 6.407704e-02	k: 108944	n:1710000
KS ci ratio: 5.730866e-02	ci left: 2.650443e-03	ci right 2.807389e-03	k: 4665	n:1710000
PRSSL1   1710000 perm   1395 sec   (1226 perm/sec)   p_kst 2.728070e-03   p_cons 6.370994e-02   p_joint 3.099415e-04

Joint ci ratio: 1.696086e-01	ci left: 2.841345e-04	ci right 3.373391e-04	k: 533	n:1720000
Cons ci ratio: 1.145822e-02	ci left: 6.334649e-02	ci right 6.407708e-02	k: 109583	n:1720000
KS ci ratio: 5.709479e-02	ci left: 2.655091e-03	ci right 2.811707e-03	k: 4700	n:1720000
PRSSL1   1720000 perm   1409 sec   (1221 perm/sec)   p_kst 2.732558e-03   p_cons 6.371105e-02   p_joint 3.098837e-04

Joint ci ratio: 1.685076e-01	ci left: 2.863672e-04	ci right 3.396065e-04	k: 540	n:1730000
Cons ci ratio: 1.142506e-02	ci left: 6.334748e-02	ci right 6.407595e-02	k: 110220	n:1730000
KS ci ratio: 5.689535e-02	ci left: 2.658547e-03	ci right 2.814801e-03	k: 4733	n:1730000
PRSSL1   1730000 perm   1424 sec   (1215 perm/sec)   p_kst 2.735838e-03   p_cons 6.371098e-02   p_joint 3.121387e-04

Joint ci ratio: 1.675807e-01	ci left: 2.880247e-04	ci right 3.412478e-04	k: 546	n:1740000
Cons ci ratio: 1.139126e-02	ci left: 6.335820e-02	ci right 6.408463e-02	k: 110874	n:1740000
KS ci ratio: 5.668011e-02	ci left: 2.663665e-03	ci right 2.819607e-03	k: 4769	n:1740000
PRSSL1   1740000 perm   1438 sec   (1210 perm/sec)   p_kst 2.740805e-03   p_cons 6.372069e-02   p_joint 3.137931e-04

Joint ci ratio: 1.668199e-01	ci left: 2.891164e-04	ci right 3.422744e-04	k: 551	n:1750000
Cons ci ratio: 1.135949e-02	ci left: 6.335057e-02	ci right 6.407487e-02	k: 111496	n:1750000
KS ci ratio: 5.653219e-02	ci left: 2.662527e-03	ci right 2.817983e-03	k: 4794	n:1750000
PRSSL1   1750000 perm   1453 sec   (1205 perm/sec)   p_kst 2.739429e-03   p_cons 6.371200e-02   p_joint 3.148571e-04

Joint ci ratio: 1.663684e-01	ci left: 2.891072e-04	ci right 3.421052e-04	k: 554	n:1760000
Cons ci ratio: 1.132740e-02	ci left: 6.334927e-02	ci right 6.407149e-02	k: 112129	n:1760000
KS ci ratio: 5.637957e-02	ci left: 2.661963e-03	ci right 2.816953e-03	k: 4820	n:1760000
PRSSL1   1760000 perm   1469 sec   (1199 perm/sec)   p_kst 2.738636e-03   p_cons 6.370966e-02   p_joint 3.147727e-04

Joint ci ratio: 1.662189e-01	ci left: 2.880153e-04	ci right 3.407609e-04	k: 555	n:1770000
Cons ci ratio: 1.129338e-02	ci left: 6.337108e-02	ci right 6.409137e-02	k: 112803	n:1770000
KS ci ratio: 5.625145e-02	ci left: 2.659178e-03	ci right 2.813642e-03	k: 4842	n:1770000
PRSSL1   1770000 perm   1483 sec   (1193 perm/sec)   p_kst 2.735593e-03   p_cons 6.373051e-02   p_joint 3.135593e-04

Joint ci ratio: 1.656241e-01	ci left: 2.885511e-04	ci right 3.411869e-04	k: 559	n:1780000
Cons ci ratio: 1.125898e-02	ci left: 6.339993e-02	ci right 6.411834e-02	k: 113490	n:1780000
KS ci ratio: 5.612999e-02	ci left: 2.655871e-03	ci right 2.809799e-03	k: 4863	n:1780000
PRSSL1   1780000 perm   1498 sec   (1188 perm/sec)   p_kst 2.732022e-03   p_cons 6.375843e-02   p_joint 3.140449e-04

Joint ci ratio: 1.651823e-01	ci left: 2.885457e-04	ci right 3.410262e-04	k: 562	n:1790000
Cons ci ratio: 1.122605e-02	ci left: 6.341621e-02	ci right 6.413269e-02	k: 114155	n:1790000
KS ci ratio: 5.600931e-02	ci left: 2.652601e-03	ci right 2.805998e-03	k: 4884	n:1790000
PRSSL1   1790000 perm   1513 sec   (1183 perm/sec)   p_kst 2.728492e-03   p_cons 6.377374e-02   p_joint 3.139665e-04

Joint ci ratio: 1.647439e-01	ci left: 2.885405e-04	ci right 3.408670e-04	k: 565	n:1800000
Cons ci ratio: 1.119601e-02	ci left: 6.340461e-02	ci right 6.411902e-02	k: 114770	n:1800000
KS ci ratio: 5.587228e-02	ci left: 2.651011e-03	ci right 2.803929e-03	k: 4908	n:1800000
PRSSL1   1800000 perm   1528 sec   (1178 perm/sec)   p_kst 2.726667e-03   p_cons 6.376111e-02   p_joint 3.138889e-04

Joint ci ratio: 1.643091e-01	ci left: 2.885356e-04	ci right 3.407094e-04	k: 568	n:1810000
Cons ci ratio: 1.116677e-02	ci left: 6.338707e-02	ci right 6.409941e-02	k: 115374	n:1810000
KS ci ratio: 5.569664e-02	ci left: 2.653253e-03	ci right 2.805804e-03	k: 4939	n:1810000
PRSSL1   1810000 perm   1543 sec   (1173 perm/sec)   p_kst 2.728729e-03   p_cons 6.374254e-02   p_joint 3.138122e-04

Joint ci ratio: 1.635918e-01	ci left: 2.895848e-04	ci right 3.416972e-04	k: 573	n:1820000
Cons ci ratio: 1.113561e-02	ci left: 6.339274e-02	ci right 6.410315e-02	k: 116020	n:1820000
KS ci ratio: 5.550026e-02	ci left: 2.657638e-03	ci right 2.809885e-03	k: 4974	n:1820000
PRSSL1   1820000 perm   1558 sec   (1168 perm/sec)   p_kst 2.732967e-03   p_cons 6.374725e-02   p_joint 3.148352e-04

Joint ci ratio: 1.627433e-01	ci left: 2.911472e-04	ci right 3.432424e-04	k: 579	n:1830000
Cons ci ratio: 1.110441e-02	ci left: 6.340163e-02	ci right 6.411013e-02	k: 116672	n:1830000
KS ci ratio: 5.527829e-02	ci left: 2.664671e-03	ci right 2.816691e-03	k: 5014	n:1830000
PRSSL1   1830000 perm   1574 sec   (1163 perm/sec)   p_kst 2.739891e-03   p_cons 6.375519e-02   p_joint 3.163934e-04

Joint ci ratio: 1.620462e-01	ci left: 2.921718e-04	ci right 3.442047e-04	k: 584	n:1840000
Cons ci ratio: 1.107533e-02	ci left: 6.339037e-02	ci right 6.409688e-02	k: 117287	n:1840000
KS ci ratio: 5.513009e-02	ci left: 2.664660e-03	ci right 2.816259e-03	k: 5041	n:1840000
PRSSL1   1840000 perm   1589 sec   (1158 perm/sec)   p_kst 2.739674e-03   p_cons 6.374293e-02   p_joint 3.173913e-04

Joint ci ratio: 1.619080e-01	ci left: 2.911111e-04	ci right 3.429066e-04	k: 585	n:1850000
Cons ci ratio: 1.104683e-02	ci left: 6.337545e-02	ci right 6.407997e-02	k: 117895	n:1850000
KS ci ratio: 5.498851e-02	ci left: 2.664117e-03	ci right 2.815284e-03	k: 5067	n:1850000
PRSSL1   1850000 perm   1605 sec   (1153 perm/sec)   p_kst 2.738919e-03   p_cons 6.372703e-02   p_joint 3.162162e-04

Joint ci ratio: 1.614952e-01	ci left: 2.910936e-04	ci right 3.427411e-04	k: 588	n:1860000
Cons ci ratio: 1.101596e-02	ci left: 6.338859e-02	ci right 6.409127e-02	k: 118555	n:1860000
KS ci ratio: 5.481027e-02	ci left: 2.667293e-03	ci right 2.818133e-03	k: 5100	n:1860000
PRSSL1   1860000 perm   1622 sec   (1147 perm/sec)   p_kst 2.741935e-03   p_cons 6.373925e-02   p_joint 3.161290e-04

Joint ci ratio: 1.610855e-01	ci left: 2.910765e-04	ci right 3.425772e-04	k: 591	n:1870000
Cons ci ratio: 1.098595e-02	ci left: 6.339518e-02	ci right 6.409601e-02	k: 119203	n:1870000
KS ci ratio: 5.467649e-02	ci left: 2.666215e-03	ci right 2.816615e-03	k: 5125	n:1870000
PRSSL1   1870000 perm   1637 sec   (1142 perm/sec)   p_kst 2.740642e-03   p_cons 6.374492e-02   p_joint 3.160428e-04

Joint ci ratio: 1.605440e-01	ci left: 2.915703e-04	ci right 3.429682e-04	k: 595	n:1880000
Cons ci ratio: 1.095481e-02	ci left: 6.341657e-02	ci right 6.411563e-02	k: 119879	n:1880000
KS ci ratio: 5.450125e-02	ci left: 2.669347e-03	ci right 2.819426e-03	k: 5158	n:1880000
PRSSL1   1880000 perm   1653 sec   (1138 perm/sec)   p_kst 2.743617e-03   p_cons 6.376543e-02   p_joint 3.164894e-04

Joint ci ratio: 1.442690e-01	ci left: 3.623037e-04	ci right 4.191396e-04	k: 737	n:1890000
Cons ci ratio: 1.092451e-02	ci left: 6.343139e-02	ci right 6.412867e-02	k: 120543	n:1890000
KS ci ratio: 5.433819e-02	ci left: 2.671402e-03	ci right 2.821133e-03	k: 5189	n:1890000
PRSSL1   1890000 perm   1669 sec   (1133 perm/sec)   p_kst 2.745503e-03   p_cons 6.377937e-02   p_joint 3.899471e-04

Joint ci ratio: 1.596094e-01	ci left: 2.920377e-04	ci right 3.431897e-04	k: 602	n:1900000
Cons ci ratio: 1.089514e-02	ci left: 6.343872e-02	ci right 6.413419e-02	k: 121193	n:1900000
KS ci ratio: 5.422868e-02	ci left: 2.668245e-03	ci right 2.817488e-03	k: 5210	n:1900000
PRSSL1   1900000 perm   1684 sec   (1128 perm/sec)   p_kst 2.742105e-03   p_cons 6.378579e-02   p_joint 3.168421e-04

Joint ci ratio: 1.436861e-01	ci left: 3.615382e-04	ci right 4.180052e-04	k: 743	n:1910000
Cons ci ratio: 1.086662e-02	ci left: 6.343918e-02	ci right 6.413282e-02	k: 121830	n:1910000
KS ci ratio: 5.403188e-02	ci left: 2.673901e-03	ci right 2.822901e-03	k: 5248	n:1910000
PRSSL1   1910000 perm   1700 sec   (1124 perm/sec)   p_kst 2.747644e-03   p_cons 6.378534e-02   p_joint 3.890052e-04

Joint ci ratio: 1.433014e-01	ci left: 3.616637e-04	ci right 4.179861e-04	k: 747	n:1920000
Cons ci ratio: 1.083743e-02	ci left: 6.344951e-02	ci right 6.414139e-02	k: 122486	n:1920000
KS ci ratio: 5.393447e-02	ci left: 2.669737e-03	ci right 2.818228e-03	k: 5267	n:1920000
PRSSL1   1920000 perm   1716 sec   (1119 perm/sec)   p_kst 2.743229e-03   p_cons 6.379479e-02   p_joint 3.890625e-04

Joint ci ratio: 1.431103e-01	ci left: 3.607889e-04	ci right 4.168938e-04	k: 749	n:1930000
Cons ci ratio: 1.081157e-02	ci left: 6.342562e-02	ci right 6.411558e-02	k: 123076	n:1930000
KS ci ratio: 5.379680e-02	ci left: 2.669705e-03	ci right 2.817804e-03	k: 5294	n:1930000
PRSSL1   1930000 perm   1732 sec   (1114 perm/sec)   p_kst 2.743005e-03   p_cons 6.376995e-02   p_joint 3.880829e-04

Joint ci ratio: 1.424470e-01	ci left: 3.624086e-04	ci right 4.184819e-04	k: 756	n:1940000
Cons ci ratio: 1.078323e-02	ci left: 6.343129e-02	ci right 6.411950e-02	k: 123723	n:1940000
KS ci ratio: 5.368040e-02	ci left: 2.667640e-03	ci right 2.815294e-03	k: 5317	n:1940000
PRSSL1   1940000 perm   1748 sec   (1110 perm/sec)   p_kst 2.740722e-03   p_cons 6.377474e-02   p_joint 3.896907e-04

Joint ci ratio: 1.419788e-01	ci left: 3.630229e-04	ci right 4.189911e-04	k: 761	n:1950000
Cons ci ratio: 1.075355e-02	ci left: 6.345430e-02	ci right 6.414084e-02	k: 124404	n:1950000
KS ci ratio: 5.357481e-02	ci left: 2.664584e-03	ci right 2.811770e-03	k: 5338	n:1950000
PRSSL1   1950000 perm   1764 sec   (1106 perm/sec)   p_kst 2.737436e-03   p_cons 6.379692e-02   p_joint 3.902564e-04

Joint ci ratio: 1.417929e-01	ci left: 3.621550e-04	ci right 4.179100e-04	k: 763	n:1960000
Cons ci ratio: 1.072668e-02	ci left: 6.344857e-02	ci right 6.413333e-02	k: 125029	n:1960000
KS ci ratio: 5.348986e-02	ci left: 2.659547e-03	ci right 2.806214e-03	k: 5355	n:1960000
PRSSL1   1960000 perm   1779 sec   (1101 perm/sec)   p_kst 2.732143e-03   p_cons 6.379031e-02   p_joint 3.892857e-04

Joint ci ratio: 1.569007e-01	ci left: 2.918986e-04	ci right 3.420768e-04	k: 623	n:1970000
Cons ci ratio: 1.070137e-02	ci left: 6.342771e-02	ci right 6.411062e-02	k: 125624	n:1970000
KS ci ratio: 5.334065e-02	ci left: 2.661072e-03	ci right 2.807401e-03	k: 5385	n:1970000
PRSSL1   1970000 perm   1796 sec   (1097 perm/sec)   p_kst 2.733503e-03   p_cons 6.376853e-02   p_joint 3.162437e-04

Joint ci ratio: 1.409650e-01	ci left: 3.628815e-04	ci right 4.183948e-04	k: 772	n:1980000
Cons ci ratio: 1.067629e-02	ci left: 6.340657e-02	ci right 6.408764e-02	k: 126218	n:1980000
KS ci ratio: 5.319268e-02	ci left: 2.662582e-03	ci right 2.808576e-03	k: 5415	n:1980000
PRSSL1   1980000 perm   1812 sec   (1093 perm/sec)   p_kst 2.734848e-03   p_cons 6.374646e-02   p_joint 3.898990e-04

Joint ci ratio: 1.401513e-01	ci left: 3.654216e-04	ci right 4.209738e-04	k: 781	n:1990000
Cons ci ratio: 1.065070e-02	ci left: 6.339315e-02	ci right 6.407244e-02	k: 126827	n:1990000
KS ci ratio: 5.307525e-02	ci left: 2.661102e-03	ci right 2.806683e-03	k: 5439	n:1990000
PRSSL1   1990000 perm   1828 sec   (1089 perm/sec)   p_kst 2.733166e-03   p_cons 6.373216e-02   p_joint 3.924623e-04

Joint ci ratio: 1.551695e-01	ci left: 2.942468e-04	ci right 3.442187e-04	k: 637	n:2000000
Cons ci ratio: 1.062272e-02	ci left: 6.340880e-02	ci right 6.408646e-02	k: 127494	n:2000000
KS ci ratio: 5.293918e-02	ci left: 2.661611e-03	ci right 2.806835e-03	k: 5467	n:2000000
PRSSL1   2000000 perm   1845 sec   (1084 perm/sec)   p_kst 2.733500e-03   p_cons 6.374700e-02   p_joint 3.185000e-04

Joint ci ratio: 1.390005e-01	ci left: 3.680274e-04	ci right 4.234784e-04	k: 794	n:2010000
Cons ci ratio: 1.059655e-02	ci left: 6.340643e-02	ci right 6.408239e-02	k: 128125	n:2010000
KS ci ratio: 5.278970e-02	ci left: 2.663588e-03	ci right 2.808497e-03	k: 5498	n:2010000
PRSSL1   2010000 perm   1862 sec   (1079 perm/sec)   p_kst 2.735323e-03   p_cons 6.374378e-02   p_joint 3.950249e-04

Joint ci ratio: 1.386522e-01	ci left: 3.681169e-04	ci right 4.234309e-04	k: 798	n:2020000
Cons ci ratio: 1.057018e-02	ci left: 6.340853e-02	ci right 6.408282e-02	k: 128765	n:2020000
KS ci ratio: 5.266058e-02	ci left: 2.663592e-03	ci right 2.808136e-03	k: 5525	n:2020000
PRSSL1   2020000 perm   1880 sec   (1075 perm/sec)   p_kst 2.735149e-03   p_cons 6.374505e-02   p_joint 3.950495e-04

Joint ci ratio: 1.382203e-01	ci left: 3.686813e-04	ci right 4.238933e-04	k: 803	n:2030000
Cons ci ratio: 1.054653e-02	ci left: 6.338211e-02	ci right 6.405460e-02	k: 129347	n:2030000
KS ci ratio: 5.248031e-02	ci left: 2.668944e-03	ci right 2.813268e-03	k: 5563	n:2030000
PRSSL1   2030000 perm   1896 sec   (1070 perm/sec)   p_kst 2.740394e-03   p_cons 6.371773e-02   p_joint 3.955665e-04

Joint ci ratio: 1.380488e-01	ci left: 3.678205e-04	ci right 4.228297e-04	k: 805	n:2040000
Cons ci ratio: 1.052160e-02	ci left: 6.337209e-02	ci right 6.404287e-02	k: 129962	n:2040000
KS ci ratio: 5.238164e-02	ci left: 2.666020e-03	ci right 2.809907e-03	k: 5584	n:2040000
PRSSL1   2040000 perm   1913 sec   (1066 perm/sec)   p_kst 2.737255e-03   p_cons 6.370686e-02   p_joint 3.946078e-04

Joint ci ratio: 1.380489e-01	ci left: 3.660263e-04	ci right 4.207671e-04	k: 805	n:2050000
Cons ci ratio: 1.049364e-02	ci left: 6.339867e-02	ci right 6.406793e-02	k: 130652	n:2050000
KS ci ratio: 5.222749e-02	ci left: 2.668903e-03	ci right 2.812508e-03	k: 5617	n:2050000
PRSSL1   2050000 perm   1930 sec   (1062 perm/sec)   p_kst 2.740000e-03   p_cons 6.373268e-02   p_joint 3.926829e-04

Joint ci ratio: 1.377076e-01	ci left: 3.661242e-04	ci right 4.207332e-04	k: 809	n:2060000
Cons ci ratio: 1.047049e-02	ci left: 6.337268e-02	ci right 6.404019e-02	k: 131234	n:2060000
KS ci ratio: 5.212560e-02	ci left: 2.666487e-03	ci right 2.809674e-03	k: 5639	n:2060000
PRSSL1   2060000 perm   1947 sec   (1058 perm/sec)   p_kst 2.737379e-03   p_cons 6.370583e-02   p_joint 3.927184e-04

Joint ci ratio: 1.373689e-01	ci left: 3.662214e-04	ci right 4.206995e-04	k: 813	n:2070000
Cons ci ratio: 1.044496e-02	ci left: 6.337587e-02	ci right 6.404178e-02	k: 131876	n:2070000
KS ci ratio: 5.198289e-02	ci left: 2.668386e-03	ci right 2.811271e-03	k: 5670	n:2070000
PRSSL1   2070000 perm   1963 sec   (1054 perm/sec)   p_kst 2.739130e-03   p_cons 6.370821e-02   p_joint 3.927536e-04

Joint ci ratio: 1.367819e-01	ci left: 3.677107e-04	ci right 4.221576e-04	k: 820	n:2080000
Cons ci ratio: 1.042033e-02	ci left: 6.337088e-02	ci right 6.403515e-02	k: 132501	n:2080000
KS ci ratio: 5.185503e-02	ci left: 2.668844e-03	ci right 2.811392e-03	k: 5698	n:2080000
PRSSL1   2080000 perm   1980 sec   (1050 perm/sec)   p_kst 2.739423e-03   p_cons 6.370240e-02   p_joint 3.942308e-04

Joint ci ratio: 1.366157e-01	ci left: 3.668755e-04	ci right 4.211274e-04	k: 822	n:2090000
Cons ci ratio: 1.039679e-02	ci left: 6.335543e-02	ci right 6.401803e-02	k: 133104	n:2090000
KS ci ratio: 5.175076e-02	ci left: 2.666937e-03	ci right 2.809088e-03	k: 5721	n:2090000
PRSSL1   2090000 perm   1998 sec   (1046 perm/sec)   p_kst 2.737321e-03   p_cons 6.368612e-02   p_joint 3.933014e-04

Joint ci ratio: 1.510806e-01	ci left: 2.962633e-04	ci right 3.451320e-04	k: 672	n:2100000
Cons ci ratio: 1.037180e-02	ci left: 6.335866e-02	ci right 6.401969e-02	k: 133746	n:2100000
KS ci ratio: 5.163360e-02	ci left: 2.666458e-03	ci right 2.808252e-03	k: 5747	n:2100000
PRSSL1   2100000 perm   2016 sec   (1042 perm/sec)   p_kst 2.736667e-03   p_cons 6.368857e-02   p_joint 3.200000e-04

Joint ci ratio: 1.507450e-01	ci left: 2.962273e-04	ci right 3.449717e-04	k: 675	n:2110000
Cons ci ratio: 1.034784e-02	ci left: 6.335193e-02	ci right 6.401135e-02	k: 134367	n:2110000
KS ci ratio: 5.153962e-02	ci left: 2.663645e-03	ci right 2.805024e-03	k: 5768	n:2110000
PRSSL1   2110000 perm   2033 sec   (1038 perm/sec)   p_kst 2.733649e-03   p_cons 6.368104e-02   p_joint 3.199052e-04

Joint ci ratio: 1.506337e-01	ci left: 2.952839e-04	ci right 3.438340e-04	k: 676	n:2120000
Cons ci ratio: 1.032324e-02	ci left: 6.335468e-02	ci right 6.401255e-02	k: 135008	n:2120000
KS ci ratio: 5.142388e-02	ci left: 2.663187e-03	ci right 2.804215e-03	k: 5794	n:2120000
PRSSL1   2120000 perm   2051 sec   (1034 perm/sec)   p_kst 2.733019e-03   p_cons 6.368302e-02   p_joint 3.188679e-04

Joint ci ratio: 1.498608e-01	ci left: 2.970604e-04	ci right 3.456296e-04	k: 683	n:2130000
Cons ci ratio: 1.029788e-02	ci left: 6.336817e-02	ci right 6.402456e-02	k: 135672	n:2130000
KS ci ratio: 5.129126e-02	ci left: 2.664587e-03	ci right 2.805315e-03	k: 5824	n:2130000
PRSSL1   2130000 perm   2069 sec   (1030 perm/sec)   p_kst 2.734272e-03   p_cons 6.369577e-02   p_joint 3.206573e-04

Joint ci ratio: 1.349853e-01	ci left: 3.673319e-04	ci right 4.209511e-04	k: 842	n:2140000
Cons ci ratio: 1.027266e-02	ci left: 6.338201e-02	ci right 6.403693e-02	k: 136337	n:2140000
KS ci ratio: 5.115527e-02	ci left: 2.666437e-03	ci right 2.806877e-03	k: 5855	n:2140000
PRSSL1   2140000 perm   2086 sec   (1026 perm/sec)   p_kst 2.735981e-03   p_cons 6.370888e-02   p_joint 3.934579e-04

Joint ci ratio: 1.346662e-01	ci left: 3.674211e-04	ci right 4.209163e-04	k: 846	n:2150000
Cons ci ratio: 1.024771e-02	ci left: 6.339479e-02	ci right 6.404824e-02	k: 137000	n:2150000
KS ci ratio: 5.102036e-02	ci left: 2.668269e-03	ci right 2.808424e-03	k: 5886	n:2150000
PRSSL1   2150000 perm   2104 sec   (1022 perm/sec)   p_kst 2.737674e-03   p_cons 6.372093e-02   p_joint 3.934884e-04

Joint ci ratio: 1.487772e-01	ci left: 2.973913e-04	ci right 3.456316e-04	k: 693	n:2160000
Cons ci ratio: 1.022404e-02	ci left: 6.339453e-02	ci right 6.404646e-02	k: 137635	n:2160000
KS ci ratio: 5.090809e-02	ci left: 2.667800e-03	ci right 2.807613e-03	k: 5912	n:2160000
PRSSL1   2160000 perm   2122 sec   (1018 perm/sec)   p_kst 2.737037e-03   p_cons 6.371991e-02   p_joint 3.208333e-04

Joint ci ratio: 1.483503e-01	ci left: 2.977956e-04	ci right 3.459506e-04	k: 697	n:2170000
Cons ci ratio: 1.019948e-02	ci left: 6.340668e-02	ci right 6.405716e-02	k: 138297	n:2170000
KS ci ratio: 5.073662e-02	ci left: 2.673705e-03	ci right 2.813342e-03	k: 5952	n:2170000
PRSSL1   2170000 perm   2140 sec   (1014 perm/sec)   p_kst 2.742857e-03   p_cons 6.373134e-02   p_joint 3.211982e-04

Joint ci ratio: 1.479270e-01	ci left: 2.981964e-04	ci right 3.462665e-04	k: 701	n:2180000
Cons ci ratio: 1.017596e-02	ci left: 6.340865e-02	ci right 6.405764e-02	k: 138937	n:2180000
KS ci ratio: 5.060075e-02	ci left: 2.675933e-03	ci right 2.815301e-03	k: 5984	n:2180000
PRSSL1   2180000 perm   2157 sec   (1010 perm/sec)   p_kst 2.744954e-03   p_cons 6.373257e-02   p_joint 3.215596e-04

Joint ci ratio: 1.334120e-01	ci left: 3.677712e-04	ci right 4.207791e-04	k: 862	n:2190000
Cons ci ratio: 1.015240e-02	ci left: 6.341289e-02	ci right 6.406041e-02	k: 139582	n:2190000
KS ci ratio: 5.046596e-02	ci left: 2.678142e-03	ci right 2.817242e-03	k: 6016	n:2190000
PRSSL1   2190000 perm   2176 sec   (1007 perm/sec)   p_kst 2.747032e-03   p_cons 6.373607e-02   p_joint 3.936073e-04

Joint ci ratio: 1.331808e-01	ci left: 3.674177e-04	ci right 4.202756e-04	k: 865	n:2200000
Cons ci ratio: 1.013055e-02	ci left: 6.339895e-02	ci right 6.404493e-02	k: 140187	n:2200000
KS ci ratio: 5.033642e-02	ci left: 2.679882e-03	ci right 2.818705e-03	k: 6047	n:2200000
PRSSL1   2200000 perm   2194 sec   (1003 perm/sec)   p_kst 2.748636e-03   p_cons 6.372136e-02   p_joint 3.931818e-04

Joint ci ratio: 1.328743e-01	ci left: 3.675049e-04	ci right 4.202440e-04	k: 869	n:2210000
Cons ci ratio: 1.010918e-02	ci left: 6.338107e-02	ci right 6.402550e-02	k: 140783	n:2210000
KS ci ratio: 5.019545e-02	ci left: 2.682947e-03	ci right 2.821529e-03	k: 6081	n:2210000
PRSSL1   2210000 perm   2212 sec   (999 perm/sec)   p_kst 2.751584e-03   p_cons 6.370271e-02   p_joint 3.932127e-04

Joint ci ratio: 1.327218e-01	ci left: 3.667204e-04	ci right 4.192819e-04	k: 871	n:2220000
Cons ci ratio: 1.008563e-02	ci left: 6.339077e-02	ci right 6.403379e-02	k: 141440	n:2220000
KS ci ratio: 5.006797e-02	ci left: 2.684650e-03	ci right 2.822958e-03	k: 6112	n:2220000
PRSSL1   2220000 perm   2231 sec   (995 perm/sec)   p_kst 2.753153e-03   p_cons 6.371171e-02   p_joint 3.923423e-04

Joint ci ratio: 1.327220e-01	ci left: 3.650759e-04	ci right 4.174017e-04	k: 871	n:2230000
Cons ci ratio: 1.006334e-02	ci left: 6.338741e-02	ci right 6.402897e-02	k: 142068	n:2230000
KS ci ratio: 4.994554e-02	ci left: 2.685896e-03	ci right 2.823920e-03	k: 6142	n:2230000
PRSSL1   2230000 perm   2249 sec   (992 perm/sec)   p_kst 2.754260e-03   p_cons 6.370762e-02   p_joint 3.905830e-04

Joint ci ratio: 1.324943e-01	ci left: 3.647409e-04	ci right 4.169220e-04	k: 874	n:2240000
Cons ci ratio: 1.004172e-02	ci left: 6.337785e-02	ci right 6.401792e-02	k: 142682	n:2240000
KS ci ratio: 4.982805e-02	ci left: 2.686691e-03	ci right 2.824421e-03	k: 6171	n:2240000
PRSSL1   2240000 perm   2268 sec   (988 perm/sec)   p_kst 2.754911e-03   p_cons 6.369732e-02   p_joint 3.901786e-04

Joint ci ratio: 1.322677e-01	ci left: 3.644091e-04	ci right 4.164465e-04	k: 877	n:2250000
Cons ci ratio: 1.001997e-02	ci left: 6.337148e-02	ci right 6.401009e-02	k: 143303	n:2250000
KS ci ratio: 4.970736e-02	ci left: 2.687917e-03	ci right 2.825367e-03	k: 6201	n:2250000
PRSSL1   2250000 perm   2286 sec   (984 perm/sec)   p_kst 2.756000e-03   p_cons 6.369022e-02   p_joint 3.897778e-04

Joint ci ratio: 1.315207e-01	ci left: 3.670754e-04	ci right 4.191745e-04	k: 887	n:2260000
Cons ci ratio: 9.997887e-03	ci left: 6.337090e-02	ci right 6.400809e-02	k: 143937	n:2260000
KS ci ratio: 4.958356e-02	ci left: 2.689571e-03	ci right 2.826753e-03	k: 6232	n:2260000
PRSSL1   2260000 perm   2305 sec   (981 perm/sec)   p_kst 2.757522e-03   p_cons 6.368894e-02   p_joint 3.924779e-04

Joint ci ratio: 1.310786e-01	ci left: 3.680147e-04	ci right 4.200578e-04	k: 893	n:2270000
Cons ci ratio: 9.974437e-03	ci left: 6.338835e-02	ci right 6.402421e-02	k: 144612	n:2270000
KS ci ratio: 4.947256e-02	ci left: 2.689904e-03	ci right 2.826788e-03	k: 6260	n:2270000
PRSSL1   2270000 perm   2323 sec   (977 perm/sec)   p_kst 2.757709e-03   p_cons 6.370573e-02   p_joint 3.933921e-04

Joint ci ratio: 1.307863e-01	ci left: 3.680976e-04	ci right 4.200273e-04	k: 897	n:2280000
Cons ci ratio: 9.951737e-03	ci left: 6.339865e-02	ci right 6.403316e-02	k: 145271	n:2280000
KS ci ratio: 4.935836e-02	ci left: 2.690669e-03	ci right 2.827266e-03	k: 6289	n:2280000
PRSSL1   2280000 perm   2342 sec   (974 perm/sec)   p_kst 2.758333e-03   p_cons 6.371535e-02   p_joint 3.934211e-04

Joint ci ratio: 1.306410e-01	ci left: 3.673349e-04	ci right 4.190950e-04	k: 899	n:2290000
Cons ci ratio: 9.930572e-03	ci left: 6.339231e-02	ci right 6.402539e-02	k: 145892	n:2290000
KS ci ratio: 4.928016e-02	ci left: 2.687545e-03	ci right 2.823761e-03	k: 6309	n:2290000
PRSSL1   2290000 perm   2361 sec   (970 perm/sec)   p_kst 2.755022e-03   p_cons 6.370830e-02   p_joint 3.925764e-04

Joint ci ratio: 1.304238e-01	ci left: 3.669996e-04	ci right 4.186198e-04	k: 902	n:2300000
Cons ci ratio: 9.907050e-03	ci left: 6.341595e-02	ci right 6.404776e-02	k: 146582	n:2300000
KS ci ratio: 4.919064e-02	ci left: 2.685737e-03	ci right 2.821607e-03	k: 6332	n:2300000
PRSSL1   2300000 perm   2380 sec   (966 perm/sec)   p_kst 2.753043e-03   p_cons 6.373130e-02   p_joint 3.921739e-04

Joint ci ratio: 1.301359e-01	ci left: 3.670860e-04	ci right 4.185956e-04	k: 906	n:2310000
Cons ci ratio: 9.884662e-03	ci left: 6.342772e-02	ci right 6.405822e-02	k: 147245	n:2310000
KS ci ratio: 4.906679e-02	ci left: 2.687793e-03	ci right 2.823415e-03	k: 6364	n:2310000
PRSSL1   2310000 perm   2399 sec   (963 perm/sec)   p_kst 2.754978e-03   p_cons 6.374242e-02   p_joint 3.922078e-04

Joint ci ratio: 1.298499e-01	ci left: 3.671718e-04	ci right 4.185714e-04	k: 910	n:2320000
Cons ci ratio: 9.862959e-03	ci left: 6.343295e-02	ci right 6.406211e-02	k: 147893	n:2320000
KS ci ratio: 4.892852e-02	ci left: 2.691535e-03	ci right 2.826953e-03	k: 6400	n:2320000
PRSSL1   2320000 perm   2418 sec   (959 perm/sec)   p_kst 2.758621e-03   p_cons 6.374698e-02   p_joint 3.922414e-04

Joint ci ratio: 1.297076e-01	ci left: 3.664265e-04	ci right 4.176612e-04	k: 912	n:2330000
Cons ci ratio: 9.841859e-03	ci left: 6.343257e-02	ci right 6.406036e-02	k: 148528	n:2330000
KS ci ratio: 4.884472e-02	ci left: 2.689310e-03	ci right 2.824377e-03	k: 6422	n:2330000
PRSSL1   2330000 perm   2437 sec   (956 perm/sec)   p_kst 2.756223e-03   p_cons 6.374592e-02   p_joint 3.914163e-04

Joint ci ratio: 1.294951e-01	ci left: 3.661010e-04	ci right 4.172000e-04	k: 915	n:2340000
Cons ci ratio: 9.821983e-03	ci left: 6.341897e-02	ci right 6.404536e-02	k: 149132	n:2340000
KS ci ratio: 4.873102e-02	ci left: 2.690481e-03	ci right 2.825284e-03	k: 6452	n:2340000
PRSSL1   2340000 perm   2457 sec   (953 perm/sec)   p_kst 2.757265e-03   p_cons 6.373162e-02   p_joint 3.910256e-04

Joint ci ratio: 1.292836e-01	ci left: 3.657784e-04	ci right 4.167425e-04	k: 918	n:2350000
Cons ci ratio: 9.801249e-03	ci left: 6.341738e-02	ci right 6.404242e-02	k: 149764	n:2350000
KS ci ratio: 4.861059e-02	ci left: 2.692484e-03	ci right 2.827044e-03	k: 6484	n:2350000
PRSSL1   2350000 perm   2476 sec   (949 perm/sec)   p_kst 2.759149e-03   p_cons 6.372936e-02   p_joint 3.906383e-04

Joint ci ratio: 1.289333e-01	ci left: 3.662787e-04	ci right 4.171637e-04	k: 923	n:2360000
Cons ci ratio: 9.780333e-03	ci left: 6.341961e-02	ci right 6.404333e-02	k: 150405	n:2360000
KS ci ratio: 4.851346e-02	ci left: 2.691958e-03	ci right 2.826216e-03	k: 6510	n:2360000
PRSSL1   2360000 perm   2495 sec   (946 perm/sec)   p_kst 2.758475e-03   p_cons 6.373093e-02   p_joint 3.911017e-04

Joint ci ratio: 1.285166e-01	ci left: 3.671834e-04	ci right 4.180166e-04	k: 929	n:2370000
Cons ci ratio: 9.758964e-03	ci left: 6.342897e-02	ci right 6.405142e-02	k: 151063	n:2370000
KS ci ratio: 4.843919e-02	ci left: 2.688936e-03	ci right 2.822832e-03	k: 6530	n:2370000
PRSSL1   2370000 perm   2515 sec   (943 perm/sec)   p_kst 2.755274e-03   p_cons 6.373966e-02   p_joint 3.919831e-04

Joint ci ratio: 1.283099e-01	ci left: 3.668606e-04	ci right 4.175612e-04	k: 932	n:2380000
Cons ci ratio: 9.739037e-03	ci left: 6.342233e-02	ci right 6.404344e-02	k: 151683	n:2380000
KS ci ratio: 4.835047e-02	ci left: 2.687600e-03	ci right 2.821178e-03	k: 6554	n:2380000
PRSSL1   2380000 perm   2534 sec   (939 perm/sec)   p_kst 2.753782e-03   p_cons 6.373235e-02   p_joint 3.915966e-04

Joint ci ratio: 1.280357e-01	ci left: 3.669456e-04	ci right 4.175414e-04	k: 936	n:2390000
Cons ci ratio: 9.720424e-03	ci left: 6.340114e-02	ci right 6.402084e-02	k: 152268	n:2390000
KS ci ratio: 4.823284e-02	ci left: 2.689582e-03	ci right 2.822924e-03	k: 6586	n:2390000
PRSSL1   2390000 perm   2554 sec   (936 perm/sec)   p_kst 2.755649e-03   p_cons 6.371046e-02   p_joint 3.916318e-04

Joint ci ratio: 1.280358e-01	ci left: 3.654166e-04	ci right 4.158017e-04	k: 936	n:2400000
Cons ci ratio: 9.701478e-03	ci left: 6.338553e-02	ci right 6.400386e-02	k: 152866	n:2400000
KS ci ratio: 4.811242e-02	ci left: 2.691960e-03	ci right 2.825078e-03	k: 6619	n:2400000
PRSSL1   2400000 perm   2574 sec   (933 perm/sec)   p_kst 2.757917e-03   p_cons 6.369417e-02   p_joint 3.900000e-04

Joint ci ratio: 1.275601e-01	ci left: 3.667121e-04	ci right 4.170737e-04	k: 943	n:2410000
Cons ci ratio: 9.681159e-03	ci left: 6.338826e-02	ci right 6.400532e-02	k: 153508	n:2410000
KS ci ratio: 4.799651e-02	ci left: 2.693909e-03	ci right 2.826793e-03	k: 6651	n:2410000
PRSSL1   2410000 perm   2593 sec   (929 perm/sec)   p_kst 2.759751e-03   p_cons 6.369627e-02   p_joint 3.912863e-04

Joint ci ratio: 1.271566e-01	ci left: 3.675971e-04	ci right 4.179085e-04	k: 949	n:2420000
Cons ci ratio: 9.661269e-03	ci left: 6.338726e-02	ci right 6.400304e-02	k: 154141	n:2420000
KS ci ratio: 4.789941e-02	ci left: 2.693800e-03	ci right 2.826403e-03	k: 6678	n:2420000
PRSSL1   2420000 perm   2613 sec   (926 perm/sec)   p_kst 2.759504e-03   p_cons 6.369463e-02   p_joint 3.921488e-04

Joint ci ratio: 1.268897e-01	ci left: 3.676782e-04	ci right 4.178871e-04	k: 953	n:2430000
Cons ci ratio: 9.641001e-03	ci left: 6.339243e-02	ci right 6.400696e-02	k: 154789	n:2430000
KS ci ratio: 4.783150e-02	ci left: 2.690440e-03	ci right 2.822684e-03	k: 6697	n:2430000
PRSSL1   2430000 perm   2633 sec   (923 perm/sec)   p_kst 2.755967e-03   p_cons 6.369918e-02   p_joint 3.921811e-04

Joint ci ratio: 1.265585e-01	ci left: 3.681555e-04	ci right 4.182885e-04	k: 958	n:2440000
Cons ci ratio: 9.622217e-03	ci left: 6.338080e-02	ci right 6.399401e-02	k: 155396	n:2440000
KS ci ratio: 4.771406e-02	ci left: 2.692776e-03	ci right 2.824802e-03	k: 6730	n:2440000
PRSSL1   2440000 perm   2652 sec   (920 perm/sec)   p_kst 2.758197e-03   p_cons 6.368689e-02   p_joint 3.926230e-04

Joint ci ratio: 1.261644e-01	ci left: 3.690244e-04	ci right 4.191076e-04	k: 964	n:2450000
Cons ci ratio: 9.602818e-03	ci left: 6.337822e-02	ci right 6.399016e-02	k: 156025	n:2450000
KS ci ratio: 4.763279e-02	ci left: 2.691061e-03	ci right 2.822771e-03	k: 6753	n:2450000
PRSSL1   2450000 perm   2673 sec   (917 perm/sec)   p_kst 2.756327e-03   p_cons 6.368367e-02   p_joint 3.934694e-04

Joint ci ratio: 1.259688e-01	ci left: 3.687054e-04	ci right 4.186619e-04	k: 967	n:2460000
Cons ci ratio: 9.582589e-03	ci left: 6.338742e-02	ci right 6.399816e-02	k: 156683	n:2460000
KS ci ratio: 4.757658e-02	ci left: 2.686549e-03	ci right 2.817878e-03	k: 6769	n:2460000
PRSSL1   2460000 perm   2693 sec   (914 perm/sec)   p_kst 2.751626e-03   p_cons 6.369228e-02   p_joint 3.930894e-04

Joint ci ratio: 1.258389e-01	ci left: 3.679968e-04	ci right 4.178021e-04	k: 969	n:2470000
Cons ci ratio: 9.563624e-03	ci left: 6.338242e-02	ci right 6.399189e-02	k: 157306	n:2470000
KS ci ratio: 4.751706e-02	ci left: 2.682472e-03	ci right 2.813435e-03	k: 6786	n:2470000
PRSSL1   2470000 perm   2713 sec   (910 perm/sec)   p_kst 2.747368e-03   p_cons 6.368664e-02   p_joint 3.923077e-04

Joint ci ratio: 1.257741e-01	ci left: 3.669035e-04	ci right 4.165333e-04	k: 970	n:2480000
Cons ci ratio: 9.543286e-03	ci left: 6.339596e-02	ci right 6.400426e-02	k: 157975	n:2480000
KS ci ratio: 4.746826e-02	ci left: 2.677234e-03	ci right 2.807802e-03	k: 6800	n:2480000
PRSSL1   2480000 perm   2734 sec   (907 perm/sec)   p_kst 2.741935e-03   p_cons 6.369960e-02   p_joint 3.911290e-04

Joint ci ratio: 1.255803e-01	ci left: 3.665969e-04	ci right 4.161032e-04	k: 973	n:2490000
Cons ci ratio: 9.524296e-03	ci left: 6.339416e-02	ci right 6.400123e-02	k: 158606	n:2490000
KS ci ratio: 4.739172e-02	ci left: 2.675213e-03	ci right 2.805466e-03	k: 6822	n:2490000
PRSSL1   2490000 perm   2754 sec   (904 perm/sec)   p_kst 2.739759e-03   p_cons 6.369719e-02   p_joint 3.907631e-04

Joint ci ratio: 1.254516e-01	ci left: 3.659054e-04	ci right 4.152639e-04	k: 975	n:2500000
Cons ci ratio: 9.504750e-03	ci left: 6.340077e-02	ci right 6.400664e-02	k: 159258	n:2500000
KS ci ratio: 4.730862e-02	ci left: 2.673998e-03	ci right 2.803958e-03	k: 6846	n:2500000
PRSSL1   2500000 perm   2775 sec   (901 perm/sec)   p_kst 2.738400e-03   p_cons 6.370320e-02   p_joint 3.900000e-04

Joint ci ratio: 1.251315e-01	ci left: 3.663772e-04	ci right 4.156639e-04	k: 980	n:2510000
Cons ci ratio: 9.486147e-03	ci left: 6.339699e-02	ci right 6.400163e-02	k: 159884	n:2510000
KS ci ratio: 4.722251e-02	ci left: 2.673187e-03	ci right 2.802865e-03	k: 6871	n:2510000
PRSSL1   2510000 perm   2795 sec   (898 perm/sec)   p_kst 2.737450e-03   p_cons 6.369880e-02   p_joint 3.904382e-04

Joint ci ratio: 1.248138e-01	ci left: 3.668455e-04	ci right 4.160605e-04	k: 985	n:2520000
Cons ci ratio: 9.468030e-03	ci left: 6.338848e-02	ci right 6.399189e-02	k: 160498	n:2520000
KS ci ratio: 4.711632e-02	ci left: 2.674736e-03	ci right 2.804189e-03	k: 6902	n:2520000
PRSSL1   2520000 perm   2816 sec   (895 perm/sec)   p_kst 2.738889e-03   p_cons 6.368968e-02   p_joint 3.908730e-04

Joint ci ratio: 1.246874e-01	ci left: 3.661613e-04	ci right 4.152312e-04	k: 987	n:2530000
Cons ci ratio: 9.448170e-03	ci left: 6.340332e-02	ci right 6.400559e-02	k: 161171	n:2530000
KS ci ratio: 4.705510e-02	ci left: 2.671194e-03	ci right 2.800304e-03	k: 6920	n:2530000
PRSSL1   2530000 perm   2837 sec   (892 perm/sec)   p_kst 2.735178e-03   p_cons 6.370395e-02   p_joint 3.901186e-04

Joint ci ratio: 1.246245e-01	ci left: 3.651012e-04	ci right 4.140024e-04	k: 988	n:2540000
Cons ci ratio: 9.428123e-03	ci left: 6.342196e-02	ci right 6.402313e-02	k: 161854	n:2540000
KS ci ratio: 4.693312e-02	ci left: 2.674685e-03	ci right 2.803618e-03	k: 6956	n:2540000
PRSSL1   2540000 perm   2858 sec   (889 perm/sec)   p_kst 2.738583e-03   p_cons 6.372205e-02   p_joint 3.889764e-04

Joint ci ratio: 1.244359e-01	ci left: 3.648092e-04	ci right 4.135920e-04	k: 991	n:2550000
Cons ci ratio: 9.410398e-03	ci left: 6.341268e-02	ci right 6.401262e-02	k: 162466	n:2550000
KS ci ratio: 4.684231e-02	ci left: 2.674660e-03	ci right 2.803336e-03	k: 6983	n:2550000
PRSSL1   2550000 perm   2878 sec   (886 perm/sec)   p_kst 2.738431e-03   p_cons 6.371216e-02   p_joint 3.886275e-04

Joint ci ratio: 1.241234e-01	ci left: 3.652766e-04	ci right 4.139902e-04	k: 996	n:2560000
Cons ci ratio: 9.392374e-03	ci left: 6.340854e-02	ci right 6.400729e-02	k: 163091	n:2560000
KS ci ratio: 4.673866e-02	ci left: 2.676180e-03	ci right 2.804637e-03	k: 7014	n:2560000
PRSSL1   2560000 perm   2899 sec   (883 perm/sec)   p_kst 2.739844e-03   p_cons 6.370742e-02   p_joint 3.890625e-04

Joint ci ratio: 1.238752e-01	ci left: 3.653634e-04	ci right 4.139840e-04	k: 1000	n:2570000
Cons ci ratio: 9.373718e-03	ci left: 6.341375e-02	ci right 6.401135e-02	k: 163740	n:2570000
KS ci ratio: 4.666892e-02	ci left: 2.673842e-03	ci right 2.801990e-03	k: 7035	n:2570000
PRSSL1   2570000 perm   2921 sec   (880 perm/sec)   p_kst 2.737354e-03   p_cons 6.371206e-02   p_joint 3.891051e-04

Joint ci ratio: 1.235056e-01	ci left: 3.662009e-04	ci right 4.147769e-04	k: 1006	n:2580000
Cons ci ratio: 9.356450e-03	ci left: 6.340268e-02	ci right 6.399907e-02	k: 164347	n:2580000
KS ci ratio: 4.658956e-02	ci left: 2.672672e-03	ci right 2.800541e-03	k: 7059	n:2580000
PRSSL1   2580000 perm   2942 sec   (877 perm/sec)   p_kst 2.736047e-03   p_cons 6.370039e-02   p_joint 3.899225e-04

Joint ci ratio: 1.231392e-01	ci left: 3.670322e-04	ci right 4.155635e-04	k: 1012	n:2590000
Cons ci ratio: 9.337947e-03	ci left: 6.340865e-02	ci right 6.400391e-02	k: 164998	n:2590000
KS ci ratio: 4.650402e-02	ci left: 2.672275e-03	ci right 2.799883e-03	k: 7085	n:2590000
PRSSL1   2590000 perm   2963 sec   (874 perm/sec)   p_kst 2.735521e-03   p_cons 6.370579e-02   p_joint 3.907336e-04

Joint ci ratio: 1.228968e-01	ci left: 3.671116e-04	ci right 4.155509e-04	k: 1016	n:2600000
Cons ci ratio: 9.318953e-03	ci left: 6.342225e-02	ci right 6.401642e-02	k: 165669	n:2600000
KS ci ratio: 4.640914e-02	ci left: 2.673021e-03	ci right 2.800398e-03	k: 7114	n:2600000
PRSSL1   2600000 perm   2984 sec   (871 perm/sec)   p_kst 2.736154e-03   p_cons 6.371885e-02   p_joint 3.907692e-04

Joint ci ratio: 1.227160e-01	ci left: 3.668192e-04	ci right 4.151435e-04	k: 1019	n:2610000
Cons ci ratio: 9.300372e-03	ci left: 6.343192e-02	ci right 6.402499e-02	k: 166330	n:2610000
KS ci ratio: 4.630508e-02	ci left: 2.674898e-03	ci right 2.802071e-03	k: 7146	n:2610000
PRSSL1   2610000 perm   3005 sec   (869 perm/sec)   p_kst 2.737931e-03   p_cons 6.372797e-02   p_joint 3.904215e-04

Joint ci ratio: 1.224163e-01	ci left: 3.672690e-04	ci right 4.155259e-04	k: 1024	n:2620000
Cons ci ratio: 9.282229e-03	ci left: 6.343733e-02	ci right 6.402928e-02	k: 166980	n:2620000
KS ci ratio: 4.621787e-02	ci left: 2.674875e-03	ci right 2.801801e-03	k: 7173	n:2620000
PRSSL1   2620000 perm   3027 sec   (866 perm/sec)   p_kst 2.737786e-03   p_cons 6.373282e-02   p_joint 3.908397e-04

Joint ci ratio: 1.222375e-01	ci left: 3.669783e-04	ci right 4.151215e-04	k: 1027	n:2630000
Cons ci ratio: 9.264398e-03	ci left: 6.344004e-02	ci right 6.403088e-02	k: 167623	n:2630000
KS ci ratio: 4.612793e-02	ci left: 2.675228e-03	ci right 2.801917e-03	k: 7201	n:2630000
PRSSL1   2630000 perm   3048 sec   (863 perm/sec)   p_kst 2.738023e-03   p_cons 6.373498e-02   p_joint 3.904943e-04

Joint ci ratio: 1.220596e-01	ci left: 3.666899e-04	ci right 4.147201e-04	k: 1030	n:2640000
Cons ci ratio: 9.246083e-03	ci left: 6.345030e-02	ci right 6.404006e-02	k: 168286	n:2640000
KS ci ratio: 4.606408e-02	ci left: 2.672583e-03	ci right 2.798966e-03	k: 7221	n:2640000
PRSSL1   2640000 perm   3070 sec   (860 perm/sec)   p_kst 2.735227e-03   p_cons 6.374470e-02   p_joint 3.901515e-04

Joint ci ratio: 1.219414e-01	ci left: 3.660378e-04	ci right 4.139329e-04	k: 1032	n:2650000
Cons ci ratio: 9.228692e-03	ci left: 6.344993e-02	ci right 6.403857e-02	k: 168921	n:2650000
KS ci ratio: 4.598776e-02	ci left: 2.671450e-03	ci right 2.797565e-03	k: 7245	n:2650000
PRSSL1   2650000 perm   3091 sec   (857 perm/sec)   p_kst 2.733962e-03   p_cons 6.374377e-02   p_joint 3.894340e-04

Joint ci ratio: 1.217060e-01	ci left: 3.661197e-04	ci right 4.139263e-04	k: 1036	n:2660000
Cons ci ratio: 9.212096e-03	ci left: 6.344056e-02	ci right 6.402805e-02	k: 169532	n:2660000
KS ci ratio: 4.589283e-02	ci left: 2.672556e-03	ci right 2.798456e-03	k: 7275	n:2660000
PRSSL1   2660000 perm   3113 sec   (855 perm/sec)   p_kst 2.734962e-03   p_cons 6.373383e-02   p_joint 3.894737e-04

Joint ci ratio: 1.214719e-01	ci left: 3.662010e-04	ci right 4.139197e-04	k: 1040	n:2670000
Cons ci ratio: 9.195329e-03	ci left: 6.343463e-02	ci right 6.402099e-02	k: 170152	n:2670000
KS ci ratio: 4.579535e-02	ci left: 2.674023e-03	ci right 2.799718e-03	k: 7306	n:2670000
PRSSL1   2670000 perm   3134 sec   (852 perm/sec)   p_kst 2.736330e-03   p_cons 6.372734e-02   p_joint 3.895131e-04

Joint ci ratio: 1.214137e-01	ci left: 3.651964e-04	ci right 4.127597e-04	k: 1041	n:2680000
Cons ci ratio: 9.178424e-03	ci left: 6.343173e-02	ci right 6.401698e-02	k: 170780	n:2680000
KS ci ratio: 4.570785e-02	ci left: 2.674374e-03	ci right 2.799839e-03	k: 7334	n:2680000
PRSSL1   2680000 perm   3156 sec   (849 perm/sec)   p_kst 2.736567e-03   p_cons 6.372388e-02   p_joint 3.884328e-04

Joint ci ratio: 1.211813e-01	ci left: 3.652806e-04	ci right 4.127574e-04	k: 1045	n:2690000
Cons ci ratio: 9.161298e-03	ci left: 6.343292e-02	ci right 6.401709e-02	k: 171419	n:2690000
KS ci ratio: 4.563018e-02	ci left: 2.673620e-03	ci right 2.798830e-03	k: 7359	n:2690000
PRSSL1   2690000 perm   3178 sec   (846 perm/sec)   p_kst 2.735688e-03   p_cons 6.372454e-02   p_joint 3.884758e-04

Joint ci ratio: 1.210079e-01	ci left: 3.650052e-04	ci right 4.123734e-04	k: 1048	n:2700000
Cons ci ratio: 9.145203e-03	ci left: 6.342192e-02	ci right 6.400495e-02	k: 172025	n:2700000
KS ci ratio: 4.555908e-02	ci left: 2.672139e-03	ci right 2.797080e-03	k: 7382	n:2700000
PRSSL1   2700000 perm   3200 sec   (844 perm/sec)   p_kst 2.734074e-03   p_cons 6.371296e-02   p_joint 3.881481e-04

Joint ci ratio: 1.207779e-01	ci left: 3.650897e-04	ci right 4.123723e-04	k: 1052	n:2710000
Cons ci ratio: 9.128149e-03	ci left: 6.342461e-02	ci right 6.400658e-02	k: 172668	n:2710000
KS ci ratio: 4.544220e-02	ci left: 2.676141e-03	ci right 2.800940e-03	k: 7420	n:2710000
PRSSL1   2710000 perm   3222 sec   (841 perm/sec)   p_kst 2.738007e-03   p_cons 6.371513e-02   p_joint 3.881919e-04

Joint ci ratio: 1.206062e-01	ci left: 3.648171e-04	ci right 4.119925e-04	k: 1055	n:2720000
Cons ci ratio: 9.112510e-03	ci left: 6.341005e-02	ci right 6.399088e-02	k: 173264	n:2720000
KS ci ratio: 4.537198e-02	ci left: 2.674662e-03	ci right 2.799194e-03	k: 7443	n:2720000
PRSSL1   2720000 perm   3243 sec   (839 perm/sec)   p_kst 2.736397e-03   p_cons 6.370000e-02   p_joint 3.878676e-04

Joint ci ratio: 1.204922e-01	ci left: 3.641913e-04	ci right 4.112380e-04	k: 1057	n:2730000
Cons ci ratio: 9.095414e-03	ci left: 6.341570e-02	ci right 6.399548e-02	k: 173915	n:2730000
KS ci ratio: 4.527169e-02	ci left: 2.676816e-03	ci right 2.801166e-03	k: 7476	n:2730000
PRSSL1   2730000 perm   3264 sec   (836 perm/sec)   p_kst 2.738462e-03   p_cons 6.370513e-02   p_joint 3.871795e-04

Joint ci ratio: 1.202085e-01	ci left: 3.646320e-04	ci right 4.116169e-04	k: 1062	n:2740000
Cons ci ratio: 9.078525e-03	ci left: 6.341985e-02	ci right 6.399859e-02	k: 174562	n:2740000
KS ci ratio: 4.519924e-02	ci left: 2.675707e-03	ci right 2.799801e-03	k: 7500	n:2740000
PRSSL1   2740000 perm   3287 sec   (834 perm/sec)   p_kst 2.737226e-03   p_cons 6.370876e-02   p_joint 3.875912e-04

Joint ci ratio: 1.201520e-01	ci left: 3.636588e-04	ci right 4.104947e-04	k: 1063	n:2750000
Cons ci ratio: 9.062034e-03	ci left: 6.341998e-02	ci right 6.399766e-02	k: 175198	n:2750000
KS ci ratio: 4.510910e-02	ci left: 2.676763e-03	ci right 2.800652e-03	k: 7530	n:2750000
PRSSL1   2750000 perm   3309 sec   (831 perm/sec)   p_kst 2.738182e-03   p_cons 6.370836e-02   p_joint 3.865455e-04

Joint ci ratio: 1.199830e-01	ci left: 3.633955e-04	ci right 4.101270e-04	k: 1066	n:2760000
Cons ci ratio: 9.045302e-03	ci left: 6.342445e-02	ci right 6.400110e-02	k: 175846	n:2760000
KS ci ratio: 4.501652e-02	ci left: 2.678170e-03	ci right 2.801863e-03	k: 7561	n:2760000
PRSSL1   2760000 perm   3331 sec   (829 perm/sec)   p_kst 2.739493e-03   p_cons 6.371232e-02   p_joint 3.862319e-04

Joint ci ratio: 1.198708e-01	ci left: 3.627839e-04	ci right 4.093901e-04	k: 1068	n:2770000
Cons ci ratio: 9.028691e-03	ci left: 6.342853e-02	ci right 6.400415e-02	k: 176493	n:2770000
KS ci ratio: 4.493637e-02	ci left: 2.678139e-03	ci right 2.801605e-03	k: 7588	n:2770000
PRSSL1   2770000 perm   3353 sec   (826 perm/sec)   p_kst 2.739350e-03   p_cons 6.371588e-02   p_joint 3.855596e-04

Joint ci ratio: 1.197029e-01	ci left: 3.625257e-04	ci right 4.090289e-04	k: 1071	n:2780000
Cons ci ratio: 9.012768e-03	ci left: 6.342468e-02	ci right 6.399925e-02	k: 177118	n:2780000
KS ci ratio: 4.483009e-02	ci left: 2.681310e-03	ci right 2.804622e-03	k: 7624	n:2780000
PRSSL1   2780000 perm   3376 sec   (823 perm/sec)   p_kst 2.742446e-03   p_cons 6.371151e-02   p_joint 3.852518e-04

Joint ci ratio: 1.195915e-01	ci left: 3.619218e-04	ci right 4.083011e-04	k: 1073	n:2790000
Cons ci ratio: 8.996199e-03	ci left: 6.343052e-02	ci right 6.400408e-02	k: 177770	n:2790000
KS ci ratio: 4.478616e-02	ci left: 2.677015e-03	ci right 2.800006e-03	k: 7639	n:2790000
PRSSL1   2790000 perm   3398 sec   (821 perm/sec)   p_kst 2.737993e-03   p_cons 6.371685e-02   p_joint 3.845878e-04

Joint ci ratio: 1.192036e-01	ci left: 3.630545e-04	ci right 4.094175e-04	k: 1080	n:2800000
Cons ci ratio: 8.979910e-03	ci left: 6.343382e-02	ci right 6.400637e-02	k: 178415	n:2800000
KS ci ratio: 4.470724e-02	ci left: 2.676989e-03	ci right 2.799757e-03	k: 7666	n:2800000
PRSSL1   2800000 perm   3420 sec   (819 perm/sec)   p_kst 2.737857e-03   p_cons 6.371964e-02   p_joint 3.857143e-04

Joint ci ratio: 1.190385e-01	ci left: 3.627983e-04	ci right 4.090599e-04	k: 1083	n:2810000
Cons ci ratio: 8.963922e-03	ci left: 6.343426e-02	ci right 6.400579e-02	k: 179052	n:2810000
KS ci ratio: 4.463164e-02	ci left: 2.676612e-03	ci right 2.799149e-03	k: 7692	n:2810000
PRSSL1   2810000 perm   3443 sec   (816 perm/sec)   p_kst 2.737367e-03   p_cons 6.371957e-02   p_joint 3.854093e-04

Joint ci ratio: 1.187649e-01	ci left: 3.632321e-04	ci right 4.094351e-04	k: 1088	n:2820000
Cons ci ratio: 8.948392e-03	ci left: 6.342974e-02	ci right 6.400023e-02	k: 179675	n:2820000
KS ci ratio: 4.455352e-02	ci left: 2.676588e-03	ci right 2.798904e-03	k: 7719	n:2820000
PRSSL1   2820000 perm   3466 sec   (814 perm/sec)   p_kst 2.737234e-03   p_cons 6.371454e-02   p_joint 3.858156e-04

Joint ci ratio: 1.186560e-01	ci left: 3.626343e-04	ci right 4.087161e-04	k: 1090	n:2830000
Cons ci ratio: 8.932414e-03	ci left: 6.343231e-02	ci right 6.400180e-02	k: 180318	n:2830000
KS ci ratio: 4.445856e-02	ci left: 2.678661e-03	ci right 2.800805e-03	k: 7752	n:2830000
PRSSL1   2830000 perm   3489 sec   (811 perm/sec)   p_kst 2.739223e-03   p_cons 6.371661e-02   p_joint 3.851590e-04

Joint ci ratio: 1.184933e-01	ci left: 3.623825e-04	ci right 4.083646e-04	k: 1093	n:2840000
Cons ci ratio: 8.916810e-03	ci left: 6.343100e-02	ci right 6.399947e-02	k: 180950	n:2840000
KS ci ratio: 4.439280e-02	ci left: 2.677238e-03	ci right 2.799131e-03	k: 7775	n:2840000
PRSSL1   2840000 perm   3512 sec   (809 perm/sec)   p_kst 2.737676e-03   p_cons 6.371479e-02   p_joint 3.848592e-04

Joint ci ratio: 1.184392e-01	ci left: 3.614514e-04	ci right 4.072930e-04	k: 1094	n:2850000
Cons ci ratio: 8.900816e-03	ci left: 6.343599e-02	ci right 6.400349e-02	k: 181600	n:2850000
KS ci ratio: 4.432732e-02	ci left: 2.675825e-03	ci right 2.797470e-03	k: 7798	n:2850000
PRSSL1   2850000 perm   3537 sec   (806 perm/sec)   p_kst 2.736140e-03   p_cons 6.371930e-02   p_joint 3.838596e-04

Joint ci ratio: 1.181160e-01	ci left: 3.622234e-04	ci right 4.080288e-04	k: 1100	n:2860000
Cons ci ratio: 8.886158e-03	ci left: 6.342421e-02	ci right 6.399066e-02	k: 182202	n:2860000
KS ci ratio: 4.424796e-02	ci left: 2.676151e-03	ci right 2.797587e-03	k: 7826	n:2860000
PRSSL1   2860000 perm   3560 sec   (803 perm/sec)   p_kst 2.736364e-03   p_cons 6.370699e-02   p_joint 3.846154e-04

Joint ci ratio: 1.180089e-01	ci left: 3.616376e-04	ci right 4.073246e-04	k: 1102	n:2870000
Cons ci ratio: 8.870588e-03	ci left: 6.342572e-02	ci right 6.399119e-02	k: 182842	n:2870000
KS ci ratio: 4.414367e-02	ci left: 2.679576e-03	ci right 2.800873e-03	k: 7863	n:2870000
PRSSL1   2870000 perm   3583 sec   (801 perm/sec)   p_kst 2.739721e-03   p_cons 6.370801e-02   p_joint 3.839721e-04

Joint ci ratio: 1.180090e-01	ci left: 3.603819e-04	ci right 4.059103e-04	k: 1102	n:2880000
Cons ci ratio: 8.855099e-03	ci left: 6.342722e-02	ci right 6.399171e-02	k: 183482	n:2880000
KS ci ratio: 4.406249e-02	ci left: 2.680230e-03	ci right 2.801329e-03	k: 7892	n:2880000
PRSSL1   2880000 perm   3606 sec   (799 perm/sec)   p_kst 2.740278e-03   p_cons 6.370903e-02   p_joint 3.826389e-04

Joint ci ratio: 1.178488e-01	ci left: 3.601424e-04	ci right 4.055744e-04	k: 1105	n:2890000
Cons ci ratio: 8.839845e-03	ci left: 6.342664e-02	ci right 6.399015e-02	k: 184116	n:2890000
KS ci ratio: 4.398175e-02	ci left: 2.680880e-03	ci right 2.801781e-03	k: 7921	n:2890000
PRSSL1   2890000 perm   3629 sec   (796 perm/sec)   p_kst 2.740830e-03   p_cons 6.370796e-02   p_joint 3.823529e-04

Joint ci ratio: 1.177957e-01	ci left: 3.592351e-04	ci right 4.045309e-04	k: 1106	n:2900000
Cons ci ratio: 8.824185e-03	ci left: 6.343261e-02	ci right 6.399516e-02	k: 184769	n:2900000
KS ci ratio: 4.392917e-02	ci left: 2.678115e-03	ci right 2.798743e-03	k: 7940	n:2900000
PRSSL1   2900000 perm   3653 sec   (794 perm/sec)   p_kst 2.737931e-03   p_cons 6.371345e-02   p_joint 3.813793e-04

Joint ci ratio: 1.176894e-01	ci left: 3.586677e-04	ci right 4.038482e-04	k: 1108	n:2910000
Cons ci ratio: 8.809876e-03	ci left: 6.342138e-02	ci right 6.398292e-02	k: 185372	n:2910000
KS ci ratio: 4.387954e-02	ci left: 2.675030e-03	ci right 2.795379e-03	k: 7958	n:2910000
PRSSL1   2910000 perm   3676 sec   (792 perm/sec)   p_kst 2.734708e-03   p_cons 6.370172e-02   p_joint 3.807560e-04

Joint ci ratio: 1.176365e-01	ci left: 3.577718e-04	ci right 4.028178e-04	k: 1109	n:2920000
Cons ci ratio: 8.794702e-03	ci left: 6.342288e-02	ci right 6.398346e-02	k: 186012	n:2920000
KS ci ratio: 4.381630e-02	ci left: 2.673659e-03	ci right 2.793769e-03	k: 7981	n:2920000
PRSSL1   2920000 perm   3700 sec   (789 perm/sec)   p_kst 2.733219e-03   p_cons 6.370274e-02   p_joint 3.797945e-04

Joint ci ratio: 1.174251e-01	ci left: 3.578758e-04	ci right 4.028483e-04	k: 1113	n:2930000
Cons ci ratio: 8.780361e-03	ci left: 6.341415e-02	ci right 6.397374e-02	k: 186622	n:2930000
KS ci ratio: 4.373965e-02	ci left: 2.673986e-03	ci right 2.793895e-03	k: 8009	n:2930000
PRSSL1   2930000 perm   3723 sec   (787 perm/sec)   p_kst 2.733447e-03   p_cons 6.369352e-02   p_joint 3.798635e-04

Joint ci ratio: 1.173198e-01	ci left: 3.573188e-04	ci right 4.021783e-04	k: 1115	n:2940000
Cons ci ratio: 8.764364e-03	ci left: 6.342891e-02	ci right 6.398760e-02	k: 187301	n:2940000
KS ci ratio: 4.368247e-02	ci left: 2.671955e-03	ci right 2.791613e-03	k: 8030	n:2940000
PRSSL1   2940000 perm   3747 sec   (785 perm/sec)   p_kst 2.731293e-03   p_cons 6.370782e-02   p_joint 3.792517e-04

Joint ci ratio: 1.171625e-01	ci left: 3.570947e-04	ci right 4.018617e-04	k: 1118	n:2950000
Cons ci ratio: 8.750667e-03	ci left: 6.341345e-02	ci right 6.397113e-02	k: 187891	n:2950000
KS ci ratio: 4.363911e-02	ci left: 2.668262e-03	ci right 2.787633e-03	k: 8046	n:2950000
PRSSL1   2950000 perm   3771 sec   (782 perm/sec)   p_kst 2.727458e-03   p_cons 6.369186e-02   p_joint 3.789831e-04

Joint ci ratio: 1.167458e-01	ci left: 3.585119e-04	ci right 4.032858e-04	k: 1126	n:2960000
Cons ci ratio: 8.735426e-03	ci left: 6.342002e-02	ci right 6.397678e-02	k: 188546	n:2960000
KS ci ratio: 4.354986e-02	ci left: 2.670275e-03	ci right 2.789485e-03	k: 8079	n:2960000
PRSSL1   2960000 perm   3795 sec   (780 perm/sec)   p_kst 2.729392e-03   p_cons 6.369797e-02   p_joint 3.804054e-04

Joint ci ratio: 1.163849e-01	ci left: 3.595930e-04	ci right 4.043535e-04	k: 1133	n:2970000
Cons ci ratio: 8.720658e-03	ci left: 6.342117e-02	ci right 6.397699e-02	k: 189185	n:2970000
KS ci ratio: 4.347190e-02	ci left: 2.670942e-03	ci right 2.789963e-03	k: 8108	n:2970000
PRSSL1   2970000 perm   3819 sec   (778 perm/sec)   p_kst 2.729966e-03   p_cons 6.369865e-02   p_joint 3.814815e-04

Joint ci ratio: 1.161291e-01	ci left: 3.600154e-04	ci right 4.047232e-04	k: 1138	n:2980000
Cons ci ratio: 8.704936e-03	ci left: 6.343637e-02	ci right 6.399132e-02	k: 189866	n:2980000
KS ci ratio: 4.339437e-02	ci left: 2.671605e-03	ci right 2.790438e-03	k: 8137	n:2980000
PRSSL1   2980000 perm   3843 sec   (775 perm/sec)   p_kst 2.730537e-03   p_cons 6.371342e-02   p_joint 3.818792e-04

Joint ci ratio: 1.160273e-01	ci left: 3.594608e-04	ci right 4.040579e-04	k: 1140	n:2990000
Cons ci ratio: 8.691442e-03	ci left: 6.342211e-02	ci right 6.397606e-02	k: 190459	n:2990000
KS ci ratio: 4.331990e-02	ci left: 2.671933e-03	ci right 2.790572e-03	k: 8165	n:2990000
PRSSL1   2990000 perm   3867 sec   (773 perm/sec)   p_kst 2.730769e-03   p_cons 6.369866e-02   p_joint 3.812709e-04

Joint ci ratio: 1.157234e-01	ci left: 3.602046e-04	ci right 4.047690e-04	k: 1146	n:3000000
Cons ci ratio: 8.676969e-03	ci left: 6.342224e-02	ci right 6.397527e-02	k: 191095	n:3000000
KS ci ratio: 4.325111e-02	ci left: 2.671600e-03	ci right 2.790030e-03	k: 8191	n:3000000
PRSSL1   3000000 perm   3891 sec   (771 perm/sec)   p_kst 2.730333e-03   p_cons 6.369833e-02   p_joint 3.820000e-04

Joint ci ratio: 1.154720e-01	ci left: 3.606210e-04	ci right 4.051334e-04	k: 1151	n:3010000
Cons ci ratio: 8.662181e-03	ci left: 6.342768e-02	ci right 6.397981e-02	k: 191747	n:3010000
KS ci ratio: 4.318792e-02	ci left: 2.670611e-03	ci right 2.788821e-03	k: 8215	n:3010000
PRSSL1   3010000 perm   3915 sec   (769 perm/sec)   p_kst 2.729236e-03   p_cons 6.370332e-02   p_joint 3.823920e-04

Joint ci ratio: 1.152720e-01	ci left: 3.607132e-04	ci right 4.051546e-04	k: 1155	n:3020000
Cons ci ratio: 8.648549e-03	ci left: 6.341821e-02	ci right 6.396938e-02	k: 192354	n:3020000
KS ci ratio: 4.311189e-02	ci left: 2.671267e-03	ci right 2.789292e-03	k: 8244	n:3020000
PRSSL1   3020000 perm   3939 sec   (767 perm/sec)   p_kst 2.729801e-03   p_cons 6.369338e-02   p_joint 3.824503e-04

Joint ci ratio: 1.152223e-01	ci left: 3.598432e-04	ci right 4.041570e-04	k: 1156	n:3030000
Cons ci ratio: 8.634431e-03	ci left: 6.341638e-02	ci right 6.396664e-02	k: 192984	n:3030000
KS ci ratio: 4.304669e-02	ci left: 2.670613e-03	ci right 2.788426e-03	k: 8269	n:3030000
PRSSL1   3030000 perm   3964 sec   (764 perm/sec)   p_kst 2.729043e-03   p_cons 6.369109e-02   p_joint 3.815182e-04

Joint ci ratio: 1.149741e-01	ci left: 3.602569e-04	ci right 4.045196e-04	k: 1161	n:3040000
Cons ci ratio: 8.620264e-03	ci left: 6.341620e-02	ci right 6.396555e-02	k: 193619	n:3040000
KS ci ratio: 4.297659e-02	ci left: 2.670614e-03	ci right 2.788231e-03	k: 8296	n:3040000
PRSSL1   3040000 perm   3988 sec   (762 perm/sec)   p_kst 2.728947e-03   p_cons 6.369046e-02   p_joint 3.819079e-04

Joint ci ratio: 1.147275e-01	ci left: 3.606680e-04	ci right 4.048797e-04	k: 1166	n:3050000
Cons ci ratio: 8.606213e-03	ci left: 6.341537e-02	ci right 6.396382e-02	k: 194252	n:3050000
KS ci ratio: 4.288360e-02	ci left: 2.673535e-03	ci right 2.791019e-03	k: 8332	n:3050000
PRSSL1   3050000 perm   4013 sec   (760 perm/sec)   p_kst 2.731803e-03   p_cons 6.368918e-02   p_joint 3.822951e-04

Joint ci ratio: 1.146784e-01	ci left: 3.598068e-04	ci right 4.038928e-04	k: 1167	n:3060000
Cons ci ratio: 8.593008e-03	ci left: 6.340379e-02	ci right 6.395129e-02	k: 194852	n:3060000
KS ci ratio: 4.282200e-02	ci left: 2.672557e-03	ci right 2.789825e-03	k: 8356	n:3060000
PRSSL1   3060000 perm   4038 sec   (758 perm/sec)   p_kst 2.730719e-03   p_cons 6.367712e-02   p_joint 3.813725e-04

Joint ci ratio: 1.145804e-01	ci left: 3.592676e-04	ci right 4.032473e-04	k: 1169	n:3070000
Cons ci ratio: 8.578996e-03	ci left: 6.340431e-02	ci right 6.395091e-02	k: 195489	n:3070000
KS ci ratio: 4.275299e-02	ci left: 2.672552e-03	ci right 2.789627e-03	k: 8383	n:3070000
PRSSL1   3070000 perm   4063 sec   (756 perm/sec)   p_kst 2.730619e-03   p_cons 6.367720e-02   p_joint 3.807818e-04

Joint ci ratio: 1.144826e-01	ci left: 3.587318e-04	ci right 4.026060e-04	k: 1171	n:3080000
Cons ci ratio: 8.564563e-03	ci left: 6.341163e-02	ci right 6.395737e-02	k: 196147	n:3080000
KS ci ratio: 4.267923e-02	ci left: 2.673190e-03	ci right 2.790086e-03	k: 8412	n:3080000
PRSSL1   3080000 perm   4088 sec   (753 perm/sec)   p_kst 2.731169e-03   p_cons 6.368409e-02   p_joint 3.801948e-04

Joint ci ratio: 1.142392e-01	ci left: 3.591427e-04	ci right 4.029675e-04	k: 1176	n:3090000
Cons ci ratio: 8.550504e-03	ci left: 6.341471e-02	ci right 6.395957e-02	k: 196792	n:3090000
KS ci ratio: 4.260332e-02	ci left: 2.674144e-03	ci right 2.790869e-03	k: 8442	n:3090000
PRSSL1   3090000 perm   4113 sec   (751 perm/sec)   p_kst 2.732039e-03   p_cons 6.368673e-02   p_joint 3.805825e-04

Joint ci ratio: 1.138048e-01	ci left: 3.608047e-04	ci right 4.046535e-04	k: 1185	n:3100000
Cons ci ratio: 8.536306e-03	ci left: 6.342066e-02	ci right 6.396467e-02	k: 197446	n:3100000
KS ci ratio: 4.252530e-02	ci left: 2.675411e-03	ci right 2.791972e-03	k: 8473	n:3100000
PRSSL1   3100000 perm   4138 sec   (749 perm/sec)   p_kst 2.733226e-03   p_cons 6.369226e-02   p_joint 3.822581e-04

Joint ci ratio: 1.136134e-01	ci left: 3.608941e-04	ci right 4.046751e-04	k: 1189	n:3110000
Cons ci ratio: 8.522569e-03	ci left: 6.342112e-02	ci right 6.396426e-02	k: 198083	n:3110000
KS ci ratio: 4.246773e-02	ci left: 2.674126e-03	ci right 2.790469e-03	k: 8496	n:3110000
PRSSL1   3110000 perm   4162 sec   (747 perm/sec)   p_kst 2.731833e-03   p_cons 6.369228e-02   p_joint 3.823151e-04

Joint ci ratio: 1.135180e-01	ci left: 3.603602e-04	ci right 4.040373e-04	k: 1191	n:3120000
Cons ci ratio: 8.508258e-03	ci left: 6.343054e-02	ci right 6.397284e-02	k: 198748	n:3120000
KS ci ratio: 4.240292e-02	ci left: 2.673800e-03	ci right 2.789947e-03	k: 8522	n:3120000
PRSSL1   3120000 perm   4188 sec   (745 perm/sec)   p_kst 2.731410e-03   p_cons 6.370128e-02   p_joint 3.817308e-04

Joint ci ratio: 1.132807e-01	ci left: 3.607610e-04	ci right 4.043892e-04	k: 1196	n:3130000
Cons ci ratio: 8.493974e-03	ci left: 6.344053e-02	ci right 6.398200e-02	k: 199415	n:3130000
KS ci ratio: 4.234337e-02	ci left: 2.672844e-03	ci right 2.788782e-03	k: 8546	n:3130000
PRSSL1   3130000 perm   4212 sec   (743 perm/sec)   p_kst 2.730351e-03   p_cons 6.371086e-02   p_joint 3.821086e-04

Joint ci ratio: 1.130448e-01	ci left: 3.611594e-04	ci right 4.047388e-04	k: 1201	n:3140000
Cons ci ratio: 8.479422e-03	ci left: 6.345523e-02	ci right 6.399589e-02	k: 200097	n:3140000
KS ci ratio: 4.224701e-02	ci left: 2.676621e-03	ci right 2.792452e-03	k: 8585	n:3140000
PRSSL1   3140000 perm   4238 sec   (741 perm/sec)   p_kst 2.734076e-03   p_cons 6.372516e-02   p_joint 3.824841e-04

Joint ci ratio: 1.129040e-01	ci left: 3.609383e-04	ci right 4.044332e-04	k: 1204	n:3150000
Cons ci ratio: 8.465507e-03	ci left: 6.346192e-02	ci right 6.400174e-02	k: 200754	n:3150000
KS ci ratio: 4.217583e-02	ci left: 2.677233e-03	ci right 2.792891e-03	k: 8614	n:3150000
PRSSL1   3150000 perm   4263 sec   (739 perm/sec)   p_kst 2.734603e-03   p_cons 6.373143e-02   p_joint 3.822222e-04

Joint ci ratio: 1.128105e-01	ci left: 3.604112e-04	ci right 4.038041e-04	k: 1206	n:3160000
Cons ci ratio: 8.452355e-03	ci left: 6.345877e-02	ci right 6.399773e-02	k: 201380	n:3160000
KS ci ratio: 4.208793e-02	ci left: 2.680033e-03	ci right 2.795565e-03	k: 8650	n:3160000
PRSSL1   3160000 perm   4289 sec   (737 perm/sec)   p_kst 2.737342e-03   p_cons 6.372785e-02   p_joint 3.816456e-04

Joint ci ratio: 1.125311e-01	ci left: 3.611136e-04	ci right 4.044763e-04	k: 1212	n:3170000
Cons ci ratio: 8.438372e-03	ci left: 6.346824e-02	ci right 6.400638e-02	k: 202046	n:3170000
KS ci ratio: 4.199815e-02	ci left: 2.683128e-03	ci right 2.798541e-03	k: 8687	n:3170000
PRSSL1   3170000 perm   4314 sec   (735 perm/sec)   p_kst 2.740379e-03   p_cons 6.373691e-02   p_joint 3.823344e-04

Joint ci ratio: 1.124848e-01	ci left: 3.602837e-04	ci right 4.035277e-04	k: 1213	n:3180000
Cons ci ratio: 8.426101e-03	ci left: 6.345442e-02	ci right 6.399166e-02	k: 202638	n:3180000
KS ci ratio: 4.191376e-02	ci left: 2.685581e-03	ci right 2.800862e-03	k: 8722	n:3180000
PRSSL1   3180000 perm   4339 sec   (733 perm/sec)   p_kst 2.742767e-03   p_cons 6.372264e-02   p_joint 3.814465e-04

Joint ci ratio: 1.123923e-01	ci left: 3.597636e-04	ci right 4.029073e-04	k: 1215	n:3190000
Cons ci ratio: 8.412933e-03	ci left: 6.345414e-02	ci right 6.399054e-02	k: 203273	n:3190000
KS ci ratio: 4.185624e-02	ci left: 2.684607e-03	ci right 2.799684e-03	k: 8746	n:3190000
PRSSL1   3190000 perm   4365 sec   (731 perm/sec)   p_kst 2.741693e-03   p_cons 6.372194e-02   p_joint 3.808777e-04

Joint ci ratio: 1.122539e-01	ci left: 3.595505e-04	ci right 4.026120e-04	k: 1218	n:3200000
Cons ci ratio: 8.400267e-03	ci left: 6.344763e-02	ci right 6.398316e-02	k: 203888	n:3200000
KS ci ratio: 4.178701e-02	ci left: 2.685185e-03	ci right 2.800092e-03	k: 8775	n:3200000
PRSSL1   3200000 perm   4391 sec   (729 perm/sec)   p_kst 2.742187e-03   p_cons 6.371500e-02   p_joint 3.806250e-04

Joint ci ratio: 1.120702e-01	ci left: 3.596415e-04	ci right 4.026388e-04	k: 1222	n:3210000
Cons ci ratio: 8.386540e-03	ci left: 6.345702e-02	ci right 6.399174e-02	k: 204554	n:3210000
KS ci ratio: 4.172051e-02	ci left: 2.685452e-03	ci right 2.800183e-03	k: 8803	n:3210000
PRSSL1   3210000 perm   4417 sec   (727 perm/sec)   p_kst 2.742368e-03   p_cons 6.372399e-02   p_joint 3.806854e-04

Joint ci ratio: 1.118873e-01	ci left: 3.597321e-04	ci right 4.026654e-04	k: 1226	n:3220000
Cons ci ratio: 8.372772e-03	ci left: 6.346790e-02	ci right 6.400183e-02	k: 205225	n:3220000
KS ci ratio: 4.163542e-02	ci left: 2.688176e-03	ci right 2.802783e-03	k: 8839	n:3220000
PRSSL1   3220000 perm   4442 sec   (725 perm/sec)   p_kst 2.745031e-03   p_cons 6.373447e-02   p_joint 3.807453e-04

Joint ci ratio: 1.116147e-01	ci left: 3.604240e-04	ci right 4.033283e-04	k: 1232	n:3230000
Cons ci ratio: 8.360112e-03	ci left: 6.346388e-02	ci right 6.399697e-02	k: 205848	n:3230000
KS ci ratio: 4.155788e-02	ci left: 2.689964e-03	ci right 2.804429e-03	k: 8872	n:3230000
PRSSL1   3230000 perm   4469 sec   (723 perm/sec)   p_kst 2.746749e-03   p_cons 6.373003e-02   p_joint 3.814241e-04

Joint ci ratio: 1.115244e-01	ci left: 3.599117e-04	ci right 4.027179e-04	k: 1234	n:3240000
Cons ci ratio: 8.347056e-03	ci left: 6.346635e-02	ci right 6.399863e-02	k: 206492	n:3240000
KS ci ratio: 4.149013e-02	ci left: 2.690519e-03	ci right 2.804817e-03	k: 8901	n:3240000
PRSSL1   3240000 perm   4495 sec   (721 perm/sec)   p_kst 2.747222e-03   p_cons 6.373210e-02   p_joint 3.808642e-04

Joint ci ratio: 1.112993e-01	ci left: 3.602998e-04	ci right 4.030601e-04	k: 1239	n:3250000
Cons ci ratio: 8.333825e-03	ci left: 6.347219e-02	ci right 6.400367e-02	k: 207147	n:3250000
KS ci ratio: 4.140876e-02	ci left: 2.692898e-03	ci right 2.807067e-03	k: 8936	n:3250000
PRSSL1   3250000 perm   4521 sec   (719 perm/sec)   p_kst 2.749538e-03   p_cons 6.373754e-02   p_joint 3.812308e-04

Joint ci ratio: 1.112096e-01	ci left: 3.597910e-04	ci right 4.024543e-04	k: 1241	n:3260000
Cons ci ratio: 8.320571e-03	ci left: 6.347922e-02	ci right 6.400990e-02	k: 207806	n:3260000
KS ci ratio: 4.133710e-02	ci left: 2.694049e-03	ci right 2.808064e-03	k: 8967	n:3260000
PRSSL1   3260000 perm   4547 sec   (717 perm/sec)   p_kst 2.750613e-03   p_cons 6.374417e-02   p_joint 3.806748e-04

Joint ci ratio: 1.109420e-01	ci left: 3.604746e-04	ci right 4.031094e-04	k: 1247	n:3270000
Cons ci ratio: 8.307124e-03	ci left: 6.348986e-02	ci right 6.401978e-02	k: 208477	n:3270000
KS ci ratio: 4.127272e-02	ci left: 2.694284e-03	ci right 2.808128e-03	k: 8995	n:3270000
PRSSL1   3270000 perm   4573 sec   (715 perm/sec)   p_kst 2.750765e-03   p_cons 6.375443e-02   p_joint 3.813456e-04

Joint ci ratio: 1.108089e-01	ci left: 3.602649e-04	ci right 4.028204e-04	k: 1250	n:3280000
Cons ci ratio: 8.294399e-03	ci left: 6.349101e-02	ci right 6.402012e-02	k: 209117	n:3280000
KS ci ratio: 4.122467e-02	ci left: 2.692406e-03	ci right 2.806035e-03	k: 9016	n:3280000
PRSSL1   3280000 perm   4599 sec   (713 perm/sec)   p_kst 2.748780e-03   p_cons 6.375518e-02   p_joint 3.810976e-04

Joint ci ratio: 1.106321e-01	ci left: 3.603520e-04	ci right 4.028454e-04	k: 1254	n:3290000
Cons ci ratio: 8.280932e-03	ci left: 6.350369e-02	ci right 6.403204e-02	k: 209795	n:3290000
KS ci ratio: 4.118364e-02	ci left: 2.689638e-03	ci right 2.803034e-03	k: 9034	n:3290000
PRSSL1   3290000 perm   4626 sec   (711 perm/sec)   p_kst 2.745897e-03   p_cons 6.376748e-02   p_joint 3.811550e-04

Joint ci ratio: 1.105881e-01	ci left: 3.595547e-04	ci right 4.019361e-04	k: 1255	n:3300000
Cons ci ratio: 8.268201e-03	ci left: 6.350660e-02	ci right 6.403416e-02	k: 210441	n:3300000
KS ci ratio: 4.112225e-02	ci left: 2.689585e-03	ci right 2.802806e-03	k: 9061	n:3300000
PRSSL1   3300000 perm   4653 sec   (709 perm/sec)   p_kst 2.745758e-03   p_cons 6.377000e-02   p_joint 3.803030e-04

Joint ci ratio: 1.105442e-01	ci left: 3.587622e-04	ci right 4.010323e-04	k: 1256	n:3310000
Cons ci ratio: 8.256698e-03	ci left: 6.349262e-02	ci right 6.401932e-02	k: 211031	n:3310000
KS ci ratio: 4.107019e-02	ci left: 2.688336e-03	ci right 2.801358e-03	k: 9084	n:3310000
PRSSL1   3310000 perm   4679 sec   (707 perm/sec)   p_kst 2.744411e-03   p_cons 6.375559e-02   p_joint 3.794562e-04

Joint ci ratio: 1.104125e-01	ci left: 3.585602e-04	ci right 4.007529e-04	k: 1259	n:3320000
Cons ci ratio: 8.245347e-03	ci left: 6.347721e-02	ci right 6.400306e-02	k: 211616	n:3320000
KS ci ratio: 4.100930e-02	ci left: 2.688288e-03	ci right 2.801136e-03	k: 9111	n:3320000
PRSSL1   3320000 perm   4705 sec   (706 perm/sec)   p_kst 2.744277e-03   p_cons 6.373976e-02   p_joint 3.792169e-04

Joint ci ratio: 1.103250e-01	ci left: 3.580675e-04	ci right 4.001667e-04	k: 1261	n:3330000
Cons ci ratio: 8.233691e-03	ci left: 6.346700e-02	ci right 6.399202e-02	k: 212218	n:3330000
KS ci ratio: 4.096216e-02	ci left: 2.686457e-03	ci right 2.799095e-03	k: 9132	n:3330000
PRSSL1   3330000 perm   4732 sec   (704 perm/sec)   p_kst 2.742342e-03   p_cons 6.372913e-02   p_joint 3.786787e-04

Joint ci ratio: 1.101506e-01	ci left: 3.581600e-04	ci right 4.001992e-04	k: 1265	n:3340000
Cons ci ratio: 8.221671e-03	ci left: 6.346282e-02	ci right 6.398704e-02	k: 212840	n:3340000
KS ci ratio: 4.089951e-02	ci left: 2.686711e-03	ci right 2.799184e-03	k: 9160	n:3340000
PRSSL1   3340000 perm   4758 sec   (702 perm/sec)   p_kst 2.742515e-03   p_cons 6.372455e-02   p_joint 3.787425e-04

Joint ci ratio: 1.099770e-01	ci left: 3.582520e-04	ci right 4.002314e-04	k: 1269	n:3350000
Cons ci ratio: 8.208924e-03	ci left: 6.346999e-02	ci right 6.399345e-02	k: 213500	n:3350000
KS ci ratio: 4.085722e-02	ci left: 2.684304e-03	ci right 2.796558e-03	k: 9179	n:3350000
PRSSL1   3350000 perm   4785 sec   (700 perm/sec)   p_kst 2.740000e-03   p_cons 6.373134e-02   p_joint 3.788060e-04

Joint ci ratio: 1.096751e-01	ci left: 3.592119e-04	ci right 4.011808e-04	k: 1276	n:3360000
Cons ci ratio: 8.196992e-03	ci left: 6.346613e-02	ci right 6.398879e-02	k: 214123	n:3360000
KS ci ratio: 4.079727e-02	ci left: 2.684269e-03	ci right 2.796352e-03	k: 9206	n:3360000
PRSSL1   3360000 perm   4816 sec   (698 perm/sec)   p_kst 2.739881e-03   p_cons 6.372708e-02   p_joint 3.797619e-04

Joint ci ratio: 1.096322e-01	ci left: 3.584346e-04	ci right 4.002952e-04	k: 1277	n:3370000
Cons ci ratio: 8.185071e-03	ci left: 6.346288e-02	ci right 6.398475e-02	k: 214748	n:3370000
KS ci ratio: 4.075529e-02	ci left: 2.681884e-03	ci right 2.793750e-03	k: 9225	n:3370000
PRSSL1   3370000 perm   4842 sec   (696 perm/sec)   p_kst 2.737389e-03   p_cons 6.372344e-02   p_joint 3.789318e-04

Joint ci ratio: 1.095038e-01	ci left: 3.582374e-04	ci right 4.000228e-04	k: 1280	n:3380000
Cons ci ratio: 8.171621e-03	ci left: 6.348269e-02	ci right 6.400386e-02	k: 215451	n:3380000
KS ci ratio: 4.069138e-02	ci left: 2.682442e-03	ci right 2.794152e-03	k: 9254	n:3380000
PRSSL1   3380000 perm   4870 sec   (694 perm/sec)   p_kst 2.737870e-03   p_cons 6.374290e-02   p_joint 3.786982e-04

Joint ci ratio: 1.093332e-01	ci left: 3.583283e-04	ci right 4.000550e-04	k: 1284	n:3390000
Cons ci ratio: 8.159649e-03	ci left: 6.348177e-02	ci right 6.400216e-02	k: 216084	n:3390000
KS ci ratio: 4.064094e-02	ci left: 2.681245e-03	ci right 2.792763e-03	k: 9277	n:3390000
PRSSL1   3390000 perm   4897 sec   (692 perm/sec)   p_kst 2.736578e-03   p_cons 6.374159e-02   p_joint 3.787611e-04

Joint ci ratio: 1.092058e-01	ci left: 3.581326e-04	ci right 3.997848e-04	k: 1287	n:3400000
Cons ci ratio: 8.147589e-03	ci left: 6.348291e-02	ci right 6.400254e-02	k: 216724	n:3400000
KS ci ratio: 4.058631e-02	ci left: 2.680637e-03	ci right 2.791977e-03	k: 9302	n:3400000
PRSSL1   3400000 perm   4924 sec   (691 perm/sec)   p_kst 2.735882e-03   p_cons 6.374235e-02   p_joint 3.785294e-04

Joint ci ratio: 1.090366e-01	ci left: 3.582234e-04	ci right 3.998175e-04	k: 1291	n:3410000
Cons ci ratio: 8.135143e-03	ci left: 6.349048e-02	ci right 6.400938e-02	k: 217386	n:3410000
KS ci ratio: 4.053190e-02	ci left: 2.680033e-03	ci right 2.791195e-03	k: 9327	n:3410000
PRSSL1   3410000 perm   4951 sec   (689 perm/sec)   p_kst 2.735191e-03   p_cons 6.374956e-02   p_joint 3.785924e-04

Joint ci ratio: 1.087006e-01	ci left: 3.594514e-04	ci right 4.010513e-04	k: 1299	n:3420000
Cons ci ratio: 8.123250e-03	ci left: 6.349072e-02	ci right 6.400885e-02	k: 218023	n:3420000
KS ci ratio: 4.046252e-02	ci left: 2.681459e-03	ci right 2.792485e-03	k: 9359	n:3420000
PRSSL1   3420000 perm   4978 sec   (687 perm/sec)   p_kst 2.736550e-03   p_cons 6.374942e-02   p_joint 3.798246e-04

Joint ci ratio: 1.085754e-01	ci left: 3.592543e-04	ci right 4.007804e-04	k: 1302	n:3430000
Cons ci ratio: 8.111291e-03	ci left: 6.349270e-02	ci right 6.401008e-02	k: 218666	n:3430000
KS ci ratio: 4.039782e-02	ci left: 2.682299e-03	ci right 2.793178e-03	k: 9389	n:3430000
PRSSL1   3430000 perm   5005 sec   (685 perm/sec)   p_kst 2.737318e-03   p_cons 6.375102e-02   p_joint 3.795918e-04

Joint ci ratio: 1.203833e-01	ci left: 2.895871e-04	ci right 3.269601e-04	k: 1059	n:3440000
Cons ci ratio: 8.100075e-03	ci left: 6.348451e-02	ci right 6.400111e-02	k: 219274	n:3440000
KS ci ratio: 4.035061e-02	ci left: 2.680833e-03	ci right 2.791519e-03	k: 9411	n:3440000
PRSSL1   3440000 perm   5033 sec   (684 perm/sec)   p_kst 2.735756e-03   p_cons 6.374244e-02   p_joint 3.078488e-04

Joint ci ratio: 1.202133e-01	ci left: 2.895911e-04	ci right 3.269081e-04	k: 1062	n:3450000
Cons ci ratio: 8.088670e-03	ci left: 6.347984e-02	ci right 6.399567e-02	k: 219894	n:3450000
KS ci ratio: 4.028216e-02	ci left: 2.682244e-03	ci right 2.792796e-03	k: 9443	n:3450000
PRSSL1   3450000 perm   5060 sec   (682 perm/sec)   p_kst 2.737101e-03   p_cons 6.373739e-02   p_joint 3.078261e-04

Joint ci ratio: 1.200440e-01	ci left: 2.895951e-04	ci right 3.268564e-04	k: 1065	n:3460000
Cons ci ratio: 8.077176e-03	ci left: 6.347722e-02	ci right 6.399230e-02	k: 220521	n:3460000
KS ci ratio: 4.021406e-02	ci left: 2.683647e-03	ci right 2.794066e-03	k: 9475	n:3460000
PRSSL1   3460000 perm   5087 sec   (680 perm/sec)   p_kst 2.738439e-03   p_cons 6.373439e-02   p_joint 3.078035e-04

Joint ci ratio: 1.198754e-01	ci left: 2.895992e-04	ci right 3.268049e-04	k: 1068	n:3470000
Cons ci ratio: 8.065516e-03	ci left: 6.347778e-02	ci right 6.399211e-02	k: 221159	n:3470000
KS ci ratio: 4.015902e-02	ci left: 2.683331e-03	ci right 2.793582e-03	k: 9501	n:3470000
PRSSL1   3470000 perm   5115 sec   (678 perm/sec)   p_kst 2.738040e-03   p_cons 6.373458e-02   p_joint 3.077810e-04

Joint ci ratio: 1.198195e-01	ci left: 2.890457e-04	ci right 3.261618e-04	k: 1069	n:3480000
Cons ci ratio: 8.054100e-03	ci left: 6.347547e-02	ci right 6.398905e-02	k: 221787	n:3480000
KS ci ratio: 4.009365e-02	ci left: 2.684439e-03	ci right 2.794552e-03	k: 9532	n:3480000
PRSSL1   3480000 perm   5144 sec   (677 perm/sec)   p_kst 2.739080e-03   p_cons 6.373190e-02   p_joint 3.071839e-04

Joint ci ratio: 1.196518e-01	ci left: 2.890514e-04	ci right 3.261126e-04	k: 1072	n:3490000
Cons ci ratio: 8.042347e-03	ci left: 6.347889e-02	ci right 6.399175e-02	k: 222435	n:3490000
KS ci ratio: 4.004539e-02	ci left: 2.683272e-03	ci right 2.793201e-03	k: 9555	n:3490000
PRSSL1   3490000 perm   5172 sec   (675 perm/sec)   p_kst 2.737822e-03   p_cons 6.373496e-02   p_joint 3.071633e-04

Joint ci ratio: 1.194849e-01	ci left: 2.890570e-04	ci right 3.260636e-04	k: 1075	n:3500000
Cons ci ratio: 8.030876e-03	ci left: 6.347887e-02	ci right 6.399099e-02	k: 223071	n:3500000
KS ci ratio: 4.000359e-02	ci left: 2.681262e-03	ci right 2.790992e-03	k: 9575	n:3500000
PRSSL1   3500000 perm   5200 sec   (673 perm/sec)   p_kst 2.735714e-03   p_cons 6.373457e-02   p_joint 3.071429e-04

Joint ci ratio: 1.192634e-01	ci left: 2.893391e-04	ci right 3.263083e-04	k: 1079	n:3510000
Cons ci ratio: 8.020200e-03	ci left: 6.346776e-02	ci right 6.397911e-02	k: 223668	n:3510000
KS ci ratio: 3.994315e-02	ci left: 2.681803e-03	ci right 2.791385e-03	k: 9604	n:3510000
PRSSL1   3510000 perm   5228 sec   (671 perm/sec)   p_kst 2.736182e-03   p_cons 6.372308e-02   p_joint 3.074074e-04

Joint ci ratio: 1.190432e-01	ci left: 2.896196e-04	ci right 3.265515e-04	k: 1083	n:3520000
Cons ci ratio: 8.008594e-03	ci left: 6.347118e-02	ci right 6.398181e-02	k: 224316	n:3520000
KS ci ratio: 3.989128e-02	ci left: 2.681215e-03	ci right 2.790628e-03	k: 9629	n:3520000
PRSSL1   3520000 perm   5256 sec   (670 perm/sec)   p_kst 2.735511e-03   p_cons 6.372614e-02   p_joint 3.076705e-04

Joint ci ratio: 1.189335e-01	ci left: 2.893489e-04	ci right 3.262098e-04	k: 1085	n:3530000
Cons ci ratio: 7.996697e-03	ci left: 6.347967e-02	ci right 6.398961e-02	k: 224982	n:3530000
KS ci ratio: 3.985618e-02	ci left: 2.678388e-03	ci right 2.787586e-03	k: 9646	n:3530000
PRSSL1   3530000 perm   5284 sec   (668 perm/sec)   p_kst 2.732578e-03   p_cons 6.373428e-02   p_joint 3.073654e-04

Joint ci ratio: 1.188788e-01	ci left: 2.888056e-04	ci right 3.255792e-04	k: 1086	n:3540000
Cons ci ratio: 7.985515e-03	ci left: 6.347824e-02	ci right 6.398745e-02	k: 225613	n:3540000
KS ci ratio: 3.979846e-02	ci left: 2.678652e-03	ci right 2.787700e-03	k: 9674	n:3540000
PRSSL1   3540000 perm   5312 sec   (666 perm/sec)   p_kst 2.732768e-03   p_cons 6.373249e-02   p_joint 3.067797e-04

Joint ci ratio: 1.071460e-01	ci left: 3.567037e-04	ci right 3.973579e-04	k: 1337	n:3550000
Cons ci ratio: 7.974209e-03	ci left: 6.347935e-02	ci right 6.398784e-02	k: 226253	n:3550000
KS ci ratio: 3.974304e-02	ci left: 2.678637e-03	ci right 2.787529e-03	k: 9701	n:3550000
PRSSL1   3550000 perm   5341 sec   (665 perm/sec)   p_kst 2.732676e-03   p_cons 6.373324e-02   p_joint 3.766197e-04

Joint ci ratio: 1.186607e-01	ci left: 2.882733e-04	ci right 3.249071e-04	k: 1090	n:3560000
Cons ci ratio: 7.963345e-03	ci left: 6.347456e-02	ci right 6.398233e-02	k: 226872	n:3560000
KS ci ratio: 3.969400e-02	ci left: 2.677787e-03	ci right 2.786507e-03	k: 9725	n:3560000
PRSSL1   3560000 perm   5370 sec   (663 perm/sec)   p_kst 2.731742e-03   p_cons 6.372809e-02   p_joint 3.061798e-04

Joint ci ratio: 1.184979e-01	ci left: 2.882812e-04	ci right 3.248622e-04	k: 1093	n:3570000
Cons ci ratio: 7.952731e-03	ci left: 6.346673e-02	ci right 6.397375e-02	k: 227480	n:3570000
KS ci ratio: 3.963290e-02	ci left: 2.678606e-03	ci right 2.787189e-03	k: 9755	n:3570000
PRSSL1   3570000 perm   5398 sec   (661 perm/sec)   p_kst 2.732493e-03   p_cons 6.371989e-02   p_joint 3.061625e-04

Joint ci ratio: 1.183898e-01	ci left: 2.880180e-04	ci right 3.245300e-04	k: 1095	n:3580000
Cons ci ratio: 7.941824e-03	ci left: 6.346396e-02	ci right 6.397026e-02	k: 228106	n:3580000
KS ci ratio: 3.958020e-02	ci left: 2.678315e-03	ci right 2.786738e-03	k: 9781	n:3580000
PRSSL1   3580000 perm   5426 sec   (660 perm/sec)   p_kst 2.732123e-03   p_cons 6.371676e-02   p_joint 3.058659e-04

Joint ci ratio: 1.181206e-01	ci left: 2.885673e-04	ci right 3.250599e-04	k: 1100	n:3590000
Cons ci ratio: 7.931222e-03	ci left: 6.345732e-02	ci right 6.396288e-02	k: 228718	n:3590000
KS ci ratio: 3.950954e-02	ci left: 2.680507e-03	ci right 2.788821e-03	k: 9816	n:3590000
PRSSL1   3590000 perm   5455 sec   (658 perm/sec)   p_kst 2.734262e-03   p_cons 6.370975e-02   p_joint 3.064067e-04

Joint ci ratio: 1.179066e-01	ci left: 2.888441e-04	ci right 3.253009e-04	k: 1104	n:3600000
Cons ci ratio: 7.920329e-03	ci left: 6.345570e-02	ci right 6.396056e-02	k: 229348	n:3600000
KS ci ratio: 3.946538e-02	ci left: 2.679112e-03	ci right 2.787246e-03	k: 9838	n:3600000
PRSSL1   3600000 perm   5483 sec   (657 perm/sec)   p_kst 2.732778e-03   p_cons 6.370778e-02   p_joint 3.066667e-04

Joint ci ratio: 1.176938e-01	ci left: 2.891193e-04	ci right 3.255405e-04	k: 1108	n:3610000
Cons ci ratio: 7.910143e-03	ci left: 6.344414e-02	ci right 6.394825e-02	k: 229942	n:3610000
KS ci ratio: 3.940934e-02	ci left: 2.679371e-03	ci right 2.787357e-03	k: 9866	n:3610000
PRSSL1   3610000 perm   5512 sec   (655 perm/sec)   p_kst 2.732964e-03   p_cons 6.369584e-02   p_joint 3.069252e-04

Joint ci ratio: 1.176408e-01	ci left: 2.885888e-04	ci right 3.249255e-04	k: 1109	n:3620000
Cons ci ratio: 7.899044e-03	ci left: 6.344698e-02	ci right 6.395040e-02	k: 230588	n:3620000
KS ci ratio: 3.934556e-02	ci left: 2.680722e-03	ci right 2.788584e-03	k: 9898	n:3620000
PRSSL1   3620000 perm   5541 sec   (653 perm/sec)   p_kst 2.734254e-03   p_cons 6.369834e-02   p_joint 3.063536e-04

Joint ci ratio: 1.174294e-01	ci left: 2.888633e-04	ci right 3.251647e-04	k: 1113	n:3630000
Cons ci ratio: 7.888539e-03	ci left: 6.344156e-02	ci right 6.394426e-02	k: 231204	n:3630000
KS ci ratio: 3.930194e-02	ci left: 2.679338e-03	ci right 2.787022e-03	k: 9920	n:3630000
PRSSL1   3630000 perm   5570 sec   (652 perm/sec)   p_kst 2.732782e-03   p_cons 6.369256e-02   p_joint 3.066116e-04

Joint ci ratio: 1.171667e-01	ci left: 2.894030e-04	ci right 3.256853e-04	k: 1118	n:3640000
Cons ci ratio: 7.877005e-03	ci left: 6.345234e-02	ci right 6.395440e-02	k: 231879	n:3640000
KS ci ratio: 3.924659e-02	ci left: 2.679594e-03	ci right 2.787134e-03	k: 9948	n:3640000
PRSSL1   3640000 perm   5598 sec   (650 perm/sec)   p_kst 2.732967e-03   p_cons 6.370302e-02   p_joint 3.071429e-04

Joint ci ratio: 1.171144e-01	ci left: 2.888761e-04	ci right 3.250750e-04	k: 1119	n:3650000
Cons ci ratio: 7.865539e-03	ci left: 6.346279e-02	ci right 6.396420e-02	k: 232553	n:3650000
KS ci ratio: 3.919739e-02	ci left: 2.679035e-03	ci right 2.786414e-03	k: 9973	n:3650000
PRSSL1   3650000 perm   5627 sec   (649 perm/sec)   p_kst 2.732329e-03   p_cons 6.371315e-02   p_joint 3.065753e-04

Joint ci ratio: 1.169579e-01	ci left: 2.888825e-04	ci right 3.250305e-04	k: 1122	n:3660000
Cons ci ratio: 7.854699e-03	ci left: 6.346446e-02	ci right 6.396519e-02	k: 233195	n:3660000
KS ci ratio: 3.913856e-02	ci left: 2.679832e-03	ci right 2.787078e-03	k: 10003	n:3660000
PRSSL1   3660000 perm   5656 sec   (647 perm/sec)   p_kst 2.733060e-03   p_cons 6.371448e-02   p_joint 3.065574e-04

Joint ci ratio: 1.168539e-01	ci left: 2.886244e-04	ci right 3.247058e-04	k: 1124	n:3670000
Cons ci ratio: 7.843563e-03	ci left: 6.347129e-02	ci right 6.397136e-02	k: 233856	n:3670000
KS ci ratio: 3.908976e-02	ci left: 2.679275e-03	ci right 2.786362e-03	k: 10028	n:3670000
PRSSL1   3670000 perm   5686 sec   (645 perm/sec)   p_kst 2.732425e-03   p_cons 6.372098e-02   p_joint 3.062670e-04

Joint ci ratio: 1.164920e-01	ci left: 2.896867e-04	ci right 3.257811e-04	k: 1131	n:3680000
Cons ci ratio: 7.832956e-03	ci left: 6.347076e-02	ci right 6.397014e-02	k: 234490	n:3680000
KS ci ratio: 3.902946e-02	ci left: 2.680336e-03	ci right 2.787297e-03	k: 10059	n:3680000
PRSSL1   3680000 perm   5715 sec   (644 perm/sec)   p_kst 2.733424e-03   p_cons 6.372011e-02   p_joint 3.073370e-04

Joint ci ratio: 1.161844e-01	ci left: 2.904804e-04	ci right 3.265715e-04	k: 1137	n:3690000
Cons ci ratio: 7.822819e-03	ci left: 6.346374e-02	ci right 6.396242e-02	k: 235100	n:3690000
KS ci ratio: 3.896171e-02	ci left: 2.682465e-03	ci right 2.789321e-03	k: 10094	n:3690000
PRSSL1   3690000 perm   5745 sec   (642 perm/sec)   p_kst 2.735501e-03   p_cons 6.371274e-02   p_joint 3.081301e-04

Joint ci ratio: 1.160316e-01	ci left: 2.904826e-04	ci right 3.265232e-04	k: 1140	n:3700000
Cons ci ratio: 7.811995e-03	ci left: 6.346782e-02	ci right 6.396584e-02	k: 235751	n:3700000
KS ci ratio: 3.893093e-02	ci left: 2.679497e-03	ci right 2.786148e-03	k: 10110	n:3700000
PRSSL1   3700000 perm   5774 sec   (641 perm/sec)   p_kst 2.732432e-03   p_cons 6.371649e-02   p_joint 3.081081e-04

Joint ci ratio: 1.158287e-01	ci left: 2.907465e-04	ci right 3.267525e-04	k: 1144	n:3710000
Cons ci ratio: 7.801462e-03	ci left: 6.346811e-02	ci right 6.396545e-02	k: 236388	n:3710000
KS ci ratio: 3.888290e-02	ci left: 2.678948e-03	ci right 2.785443e-03	k: 10135	n:3710000
PRSSL1   3710000 perm   5804 sec   (639 perm/sec)   p_kst 2.731806e-03   p_cons 6.371644e-02   p_joint 3.083558e-04

Joint ci ratio: 1.157782e-01	ci left: 2.902260e-04	ci right 3.261508e-04	k: 1145	n:3720000
Cons ci ratio: 7.791095e-03	ci left: 6.346652e-02	ci right 6.396319e-02	k: 237018	n:3720000
KS ci ratio: 3.885039e-02	ci left: 2.676272e-03	ci right 2.782569e-03	k: 10152	n:3720000
PRSSL1   3720000 perm   5833 sec   (638 perm/sec)   p_kst 2.729032e-03   p_cons 6.371452e-02   p_joint 3.077957e-04

Joint ci ratio: 1.155264e-01	ci left: 2.907496e-04	ci right 3.266556e-04	k: 1150	n:3730000
Cons ci ratio: 7.780909e-03	ci left: 6.346280e-02	ci right 6.395879e-02	k: 237640	n:3730000
KS ci ratio: 3.878737e-02	ci left: 2.677858e-03	ci right 2.784042e-03	k: 10185	n:3730000
PRSSL1   3730000 perm   5863 sec   (636 perm/sec)   p_kst 2.730563e-03   p_cons 6.371046e-02   p_joint 3.083110e-04

Joint ci ratio: 1.154763e-01	ci left: 2.902318e-04	ci right 3.260573e-04	k: 1151	n:3740000
Cons ci ratio: 7.770554e-03	ci left: 6.346230e-02	ci right 6.395762e-02	k: 238274	n:3740000
KS ci ratio: 3.874178e-02	ci left: 2.677053e-03	ci right 2.783078e-03	k: 10209	n:3740000
PRSSL1   3740000 perm   5893 sec   (635 perm/sec)   p_kst 2.729679e-03   p_cons 6.370963e-02   p_joint 3.077540e-04

Joint ci ratio: 1.152265e-01	ci left: 2.907527e-04	ci right 3.265596e-04	k: 1156	n:3750000
Cons ci ratio: 7.759945e-03	ci left: 6.346633e-02	ci right 6.396101e-02	k: 238925	n:3750000
KS ci ratio: 3.867929e-02	ci left: 2.678629e-03	ci right 2.784541e-03	k: 10242	n:3750000
PRSSL1   3750000 perm   5922 sec   (633 perm/sec)   p_kst 2.731200e-03   p_cons 6.371333e-02   p_joint 3.082667e-04

Joint ci ratio: 1.150774e-01	ci left: 2.907544e-04	ci right 3.265119e-04	k: 1159	n:3760000
Cons ci ratio: 7.750261e-03	ci left: 6.345681e-02	ci right 6.395078e-02	k: 239525	n:3760000
KS ci ratio: 3.863218e-02	ci left: 2.678090e-03	ci right 2.783849e-03	k: 10267	n:3760000
PRSSL1   3760000 perm   5952 sec   (632 perm/sec)   p_kst 2.730585e-03   p_cons 6.370346e-02   p_joint 3.082447e-04

Joint ci ratio: 1.149783e-01	ci left: 2.904984e-04	ci right 3.261916e-04	k: 1161	n:3770000
Cons ci ratio: 7.739322e-03	ci left: 6.346718e-02	ci right 6.396054e-02	k: 240200	n:3770000
KS ci ratio: 3.859277e-02	ci left: 2.676502e-03	ci right 2.782089e-03	k: 10288	n:3770000
PRSSL1   3770000 perm   5982 sec   (630 perm/sec)   p_kst 2.728912e-03   p_cons 6.371353e-02   p_joint 3.079576e-04

Joint ci ratio: 1.148795e-01	ci left: 2.902437e-04	ci right 3.258730e-04	k: 1163	n:3780000
Cons ci ratio: 7.729183e-03	ci left: 6.346589e-02	ci right 6.395859e-02	k: 240831	n:3780000
KS ci ratio: 3.853662e-02	ci left: 2.677282e-03	ci right 2.782742e-03	k: 10318	n:3780000
PRSSL1   3780000 perm   6012 sec   (629 perm/sec)   p_kst 2.729630e-03   p_cons 6.371190e-02   p_joint 3.076720e-04

Joint ci ratio: 1.145356e-01	ci left: 2.912719e-04	ci right 3.269131e-04	k: 1170	n:3790000
Cons ci ratio: 7.719016e-03	ci left: 6.346566e-02	ci right 6.395770e-02	k: 241466	n:3790000
KS ci ratio: 3.848444e-02	ci left: 2.677534e-03	ci right 2.782858e-03	k: 10346	n:3790000
PRSSL1   3790000 perm   6042 sec   (627 perm/sec)   p_kst 2.729815e-03   p_cons 6.371135e-02   p_joint 3.087071e-04

Joint ci ratio: 1.142432e-01	ci left: 2.920392e-04	ci right 3.276769e-04	k: 1176	n:3800000
Cons ci ratio: 7.709008e-03	ci left: 6.346359e-02	ci right 6.395497e-02	k: 242094	n:3800000
KS ci ratio: 3.843804e-02	ci left: 2.677004e-03	ci right 2.782177e-03	k: 10371	n:3800000
PRSSL1   3800000 perm   6073 sec   (626 perm/sec)   p_kst 2.729211e-03   p_cons 6.370895e-02   p_joint 3.094737e-04

Joint ci ratio: 1.140979e-01	ci left: 2.920376e-04	ci right 3.276267e-04	k: 1179	n:3810000
Cons ci ratio: 7.698988e-03	ci left: 6.346231e-02	ci right 6.395305e-02	k: 242725	n:3810000
KS ci ratio: 3.839181e-02	ci left: 2.676476e-03	ci right 2.781500e-03	k: 10396	n:3810000
PRSSL1   3810000 perm   6103 sec   (624 perm/sec)   p_kst 2.728609e-03   p_cons 6.370735e-02   p_joint 3.094488e-04

Joint ci ratio: 1.139050e-01	ci left: 2.922904e-04	ci right 3.278460e-04	k: 1183	n:3820000
Cons ci ratio: 7.689209e-03	ci left: 6.345791e-02	ci right 6.394799e-02	k: 243344	n:3820000
KS ci ratio: 3.834944e-02	ci left: 2.675433e-03	ci right 2.780297e-03	k: 10419	n:3820000
PRSSL1   3820000 perm   6133 sec   (623 perm/sec)   p_kst 2.727487e-03   p_cons 6.370262e-02   p_joint 3.096859e-04

Joint ci ratio: 1.137610e-01	ci left: 2.922882e-04	ci right 3.277956e-04	k: 1186	n:3830000
Cons ci ratio: 7.679753e-03	ci left: 6.344910e-02	ci right 6.393850e-02	k: 243946	n:3830000
KS ci ratio: 3.829250e-02	ci left: 2.676464e-03	ci right 2.781209e-03	k: 10450	n:3830000
PRSSL1   3830000 perm   6165 sec   (621 perm/sec)   p_kst 2.728460e-03   p_cons 6.369347e-02   p_joint 3.096606e-04

Joint ci ratio: 1.135698e-01	ci left: 2.925391e-04	ci right 3.280132e-04	k: 1190	n:3840000
Cons ci ratio: 7.670064e-03	ci left: 6.344450e-02	ci right 6.393324e-02	k: 244564	n:3840000
KS ci ratio: 3.825046e-02	ci left: 2.675426e-03	ci right 2.780013e-03	k: 10473	n:3840000
PRSSL1   3840000 perm   6195 sec   (620 perm/sec)   p_kst 2.727344e-03   p_cons 6.368854e-02   p_joint 3.098958e-04

Joint ci ratio: 1.135698e-01	ci left: 2.917792e-04	ci right 3.271612e-04	k: 1190	n:3850000
Cons ci ratio: 7.659727e-03	ci left: 6.345055e-02	ci right 6.393868e-02	k: 245223	n:3850000
KS ci ratio: 3.817938e-02	ci left: 2.678510e-03	ci right 2.783019e-03	k: 10512	n:3850000
PRSSL1   3850000 perm   6226 sec   (618 perm/sec)   p_kst 2.730390e-03   p_cons 6.369429e-02   p_joint 3.090909e-04

Joint ci ratio: 1.133796e-01	ci left: 2.920302e-04	ci right 3.273793e-04	k: 1194	n:3860000
Cons ci ratio: 7.649997e-03	ci left: 6.344777e-02	ci right 6.393526e-02	k: 245848	n:3860000
KS ci ratio: 3.814134e-02	ci left: 2.676960e-03	ci right 2.781302e-03	k: 10533	n:3860000
PRSSL1   3860000 perm   6257 sec   (617 perm/sec)   p_kst 2.728756e-03   p_cons 6.369119e-02   p_joint 3.093264e-04

Joint ci ratio: 1.020141e-01	ci left: 3.619357e-04	ci right 4.010921e-04	k: 1475	n:3870000
Cons ci ratio: 7.640007e-03	ci left: 6.344966e-02	ci right 6.393652e-02	k: 246491	n:3870000
KS ci ratio: 3.809255e-02	ci left: 2.676953e-03	ci right 2.781158e-03	k: 10560	n:3870000
PRSSL1   3870000 perm   6287 sec   (616 perm/sec)   p_kst 2.728682e-03   p_cons 6.369276e-02   p_joint 3.811370e-04

Joint ci ratio: 1.018761e-01	ci left: 3.620075e-04	ci right 4.011156e-04	k: 1479	n:3880000
Cons ci ratio: 7.629659e-03	ci left: 6.345771e-02	ci right 6.394397e-02	k: 247158	n:3880000
KS ci ratio: 3.805297e-02	ci left: 2.675669e-03	ci right 2.779714e-03	k: 10582	n:3880000
PRSSL1   3880000 perm   6321 sec   (614 perm/sec)   p_kst 2.727320e-03   p_cons 6.370052e-02   p_joint 3.811856e-04

Joint ci ratio: 1.017730e-01	ci left: 3.618284e-04	ci right 4.008753e-04	k: 1482	n:3890000
Cons ci ratio: 7.620010e-03	ci left: 6.345545e-02	ci right 6.394108e-02	k: 247785	n:3890000
KS ci ratio: 3.800093e-02	ci left: 2.676175e-03	ci right 2.780094e-03	k: 10611	n:3890000
PRSSL1   3890000 perm   6353 sec   (612 perm/sec)   p_kst 2.727763e-03   p_cons 6.369794e-02   p_joint 3.809769e-04

Joint ci ratio: 1.016702e-01	ci left: 3.616503e-04	ci right 4.006362e-04	k: 1485	n:3900000
Cons ci ratio: 7.610938e-03	ci left: 6.344476e-02	ci right 6.392973e-02	k: 248379	n:3900000
KS ci ratio: 3.793659e-02	ci left: 2.678456e-03	ci right 2.782284e-03	k: 10647	n:3900000
PRSSL1   3900000 perm   6384 sec   (611 perm/sec)   p_kst 2.730000e-03   p_cons 6.368692e-02   p_joint 3.807692e-04

Joint ci ratio: 1.015678e-01	ci left: 3.614732e-04	ci right 4.003983e-04	k: 1488	n:3910000
Cons ci ratio: 7.601523e-03	ci left: 6.344000e-02	ci right 6.392433e-02	k: 248996	n:3910000
KS ci ratio: 3.788681e-02	ci left: 2.678699e-03	ci right 2.782397e-03	k: 10675	n:3910000
PRSSL1   3910000 perm   6415 sec   (610 perm/sec)   p_kst 2.730179e-03   p_cons 6.368184e-02   p_joint 3.805627e-04

Joint ci ratio: 1.014656e-01	ci left: 3.612969e-04	ci right 4.001616e-04	k: 1491	n:3920000
Cons ci ratio: 7.591802e-03	ci left: 6.344061e-02	ci right 6.392432e-02	k: 249634	n:3920000
KS ci ratio: 3.784786e-02	ci left: 2.677425e-03	ci right 2.780965e-03	k: 10697	n:3920000
PRSSL1   3920000 perm   6445 sec   (608 perm/sec)   p_kst 2.728827e-03   p_cons 6.368214e-02   p_joint 3.803571e-04

Joint ci ratio: 1.013638e-01	ci left: 3.611216e-04	ci right 3.999261e-04	k: 1494	n:3930000
Cons ci ratio: 7.582587e-03	ci left: 6.343385e-02	ci right 6.391692e-02	k: 250243	n:3930000
KS ci ratio: 3.779665e-02	ci left: 2.677922e-03	ci right 2.781337e-03	k: 10726	n:3930000
PRSSL1   3930000 perm   6477 sec   (607 perm/sec)   p_kst 2.729262e-03   p_cons 6.367506e-02   p_joint 3.801527e-04

Joint ci ratio: 1.012622e-01	ci left: 3.609471e-04	ci right 3.996918e-04	k: 1497	n:3940000
Cons ci ratio: 7.573116e-03	ci left: 6.343169e-02	ci right 6.391413e-02	k: 250870	n:3940000
KS ci ratio: 3.775446e-02	ci left: 2.677159e-03	ci right 2.780427e-03	k: 10750	n:3940000
PRSSL1   3940000 perm   6508 sec   (605 perm/sec)   p_kst 2.728426e-03   p_cons 6.367259e-02   p_joint 3.799492e-04

Joint ci ratio: 1.122119e-01	ci left: 2.915269e-04	ci right 3.264277e-04	k: 1219	n:3950000
Cons ci ratio: 7.564210e-03	ci left: 6.342119e-02	ci right 6.390299e-02	k: 251464	n:3950000
KS ci ratio: 3.770188e-02	ci left: 2.677904e-03	ci right 2.781055e-03	k: 10780	n:3950000
PRSSL1   3950000 perm   6539 sec   (604 perm/sec)   p_kst 2.729114e-03   p_cons 6.366177e-02   p_joint 3.086076e-04

Joint ci ratio: 1.120742e-01	ci left: 2.915270e-04	ci right 3.263822e-04	k: 1222	n:3960000
Cons ci ratio: 7.554727e-03	ci left: 6.342033e-02	ci right 6.390152e-02	k: 252096	n:3960000
KS ci ratio: 3.765127e-02	ci left: 2.678396e-03	ci right 2.781424e-03	k: 10809	n:3960000
PRSSL1   3960000 perm   6570 sec   (603 perm/sec)   p_kst 2.729545e-03   p_cons 6.366061e-02   p_joint 3.085859e-04

Joint ci ratio: 1.120285e-01	ci left: 2.910375e-04	ci right 3.258190e-04	k: 1223	n:3970000
Cons ci ratio: 7.545009e-03	ci left: 6.342375e-02	ci right 6.390434e-02	k: 252745	n:3970000
KS ci ratio: 3.760956e-02	ci left: 2.677638e-03	ci right 2.780520e-03	k: 10833	n:3970000
PRSSL1   3970000 perm   6602 sec   (601 perm/sec)   p_kst 2.728715e-03   p_cons 6.366373e-02   p_joint 3.080605e-04

Joint ci ratio: 1.010602e-01	ci left: 3.587889e-04	ci right 3.972205e-04	k: 1503	n:3980000
Cons ci ratio: 7.535312e-03	ci left: 6.342741e-02	ci right 6.390740e-02	k: 253395	n:3980000
KS ci ratio: 3.757840e-02	ci left: 2.675390e-03	ci right 2.778099e-03	k: 10851	n:3980000
PRSSL1   3980000 perm   6634 sec   (600 perm/sec)   p_kst 2.726382e-03   p_cons 6.366709e-02   p_joint 3.776382e-04

Joint ci ratio: 1.008592e-01	ci left: 3.593555e-04	ci right 3.977666e-04	k: 1509	n:3990000
Cons ci ratio: 7.525368e-03	ci left: 6.343554e-02	ci right 6.391496e-02	k: 254063	n:3990000
KS ci ratio: 3.754039e-02	ci left: 2.674147e-03	ci right 2.776702e-03	k: 10873	n:3990000
PRSSL1   3990000 perm   6665 sec   (599 perm/sec)   p_kst 2.725063e-03   p_cons 6.367494e-02   p_joint 3.781955e-04

Joint ci ratio: 1.006593e-01	ci left: 3.599193e-04	ci right 3.983100e-04	k: 1515	n:4000000
Cons ci ratio: 7.516156e-03	ci left: 6.343266e-02	ci right 6.391147e-02	k: 254687	n:4000000
KS ci ratio: 3.749732e-02	ci left: 2.673653e-03	ci right 2.776069e-03	k: 10898	n:4000000
PRSSL1   4000000 perm   6697 sec   (597 perm/sec)   p_kst 2.724500e-03   p_cons 6.367175e-02   p_joint 3.787500e-04

Joint ci ratio: 1.004607e-01	ci left: 3.604804e-04	ci right 3.988506e-04	k: 1521	n:4010000
Cons ci ratio: 7.506680e-03	ci left: 6.343452e-02	ci right 6.391274e-02	k: 255330	n:4010000
KS ci ratio: 3.744580e-02	ci left: 2.674397e-03	ci right 2.776697e-03	k: 10928	n:4010000
PRSSL1   4010000 perm   6729 sec   (596 perm/sec)   p_kst 2.725187e-03   p_cons 6.367332e-02   p_joint 3.793017e-04

Joint ci ratio: 1.002961e-01	ci left: 3.607962e-04	ci right 3.991334e-04	k: 1526	n:4020000
Cons ci ratio: 7.497552e-03	ci left: 6.343141e-02	ci right 6.390902e-02	k: 255953	n:4020000
KS ci ratio: 3.739450e-02	ci left: 2.675137e-03	ci right 2.777323e-03	k: 10958	n:4020000
PRSSL1   4020000 perm   6761 sec   (595 perm/sec)   p_kst 2.725871e-03   p_cons 6.366990e-02   p_joint 3.796020e-04

Joint ci ratio: 1.001977e-01	ci left: 3.606267e-04	ci right 3.989061e-04	k: 1529	n:4030000
Cons ci ratio: 7.488302e-03	ci left: 6.343079e-02	ci right 6.390780e-02	k: 256586	n:4030000
KS ci ratio: 3.735705e-02	ci left: 2.673907e-03	ci right 2.775941e-03	k: 10980	n:4030000
PRSSL1   4030000 perm   6793 sec   (593 perm/sec)   p_kst 2.724566e-03   p_cons 6.366898e-02   p_joint 3.794045e-04

Joint ci ratio: 1.000996e-01	ci left: 3.604580e-04	ci right 3.986798e-04	k: 1532	n:4040000
Cons ci ratio: 7.478806e-03	ci left: 6.343462e-02	ci right 6.391105e-02	k: 257237	n:4040000
KS ci ratio: 3.729932e-02	ci left: 2.675626e-03	ci right 2.777564e-03	k: 11014	n:4040000
PRSSL1   4040000 perm   6825 sec   (592 perm/sec)   p_kst 2.726238e-03   p_cons 6.367252e-02   p_joint 3.792079e-04

Joint ci ratio: 1.000344e-01	ci left: 3.600495e-04	ci right 3.982016e-04	k: 1534	n:4050000
Cons ci ratio: 7.469563e-03	ci left: 6.343498e-02	ci right 6.391083e-02	k: 257874	n:4050000
KS ci ratio: 3.726384e-02	ci left: 2.674156e-03	ci right 2.775940e-03	k: 11035	n:4050000
PRSSL1   4050000 perm   6857 sec   (591 perm/sec)   p_kst 2.724691e-03   p_cons 6.367259e-02   p_joint 3.787654e-04

Joint ci ratio: 9.987189e-02	ci left: 3.603634e-04	ci right 3.984831e-04	k: 1539	n:4060000
Cons ci ratio: 7.460539e-03	ci left: 6.343239e-02	ci right 6.390764e-02	k: 258499	n:4060000
KS ci ratio: 3.720149e-02	ci left: 2.676598e-03	ci right 2.778300e-03	k: 11072	n:4060000
PRSSL1   4060000 perm   6890 sec   (589 perm/sec)   p_kst 2.727094e-03   p_cons 6.366970e-02   p_joint 3.790640e-04

Outputting figure to mutsig2_images.part000000000139/PRSSL1.2_872_4060000_0.0027271_0.06367_0.00037906.png
                gene_name: PRSSL1
               theta_stop: 0.100 
                    nperm: 4060000 
                     p_ks: 0.0027 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.00038 
     ci_joint_bounds_left: 0.00036 
    ci_joint_bounds_right: 0.00040 

Current progress: 77 percent done.
PSAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
PSAP   10000 perm   2 sec   (6301 perm/sec)   p_kst 8.625000e-01   p_cons 5.055000e-01   p_joint 9.319000e-01

Outputting figure to mutsig2_images.part000000000139/PSAP.2_1647_10000_0.8625_0.5055_0.9319.png
                gene_name: PSAP
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 79 percent done.
PSAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
KS ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
PSAT1   10000 perm   1 sec   (6799 perm/sec)   p_kst 3.621000e-01   p_cons 1.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSAT1.2_1149_10000_0.3621_0.1812_1.png
                gene_name: PSAT1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
PSD4   10000 perm   2 sec   (5586 perm/sec)   p_kst 6.880000e-02   p_cons 8.644000e-01   p_joint 6.220000e-01

Joint ci ratio: 3.014493e-02	ci left: 4.511764e-01	ci right 4.650358e-01	k: 9162	n:20000
Cons ci ratio: 1.090437e-02	ci left: 8.612007e-01	ci right 8.706927e-01	k: 17320	n:20000
KS ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
PSD4   20000 perm   4 sec   (5023 perm/sec)   p_kst 6.965000e-02   p_cons 8.660000e-01   p_joint 4.581000e-01

Joint ci ratio: 1.902348e-02	ci left: 5.803682e-01	ci right 5.915485e-01	k: 17579	n:30000
Cons ci ratio: 8.886506e-03	ci left: 8.625317e-01	ci right 8.702639e-01	k: 25993	n:30000
KS ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
PSD4   30000 perm   6 sec   (4804 perm/sec)   p_kst 6.970000e-02   p_cons 8.664333e-01   p_joint 5.859667e-01

Outputting figure to mutsig2_images.part000000000139/PSD4.2_3235_30000_0.0697_0.86643_0.58597.png
                gene_name: PSD4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 83 percent done.
PSIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
Cons ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
KS ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
PSIP1   10000 perm   2 sec   (6383 perm/sec)   p_kst 6.287000e-01   p_cons 8.632000e-01   p_joint 8.886000e-01

Outputting figure to mutsig2_images.part000000000139/PSIP1.2_1682_10000_0.6287_0.8632_0.8886.png
                gene_name: PSIP1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 85 percent done.
PSKH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
Cons ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
KS ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
PSKH1   10000 perm   2 sec   (6576 perm/sec)   p_kst 1.623000e-01   p_cons 9.705000e-01   p_joint 8.636000e-01

Outputting figure to mutsig2_images.part000000000139/PSKH1.2_1283_10000_0.1623_0.9705_0.8636.png
                gene_name: PSKH1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 87 percent done.
PSMA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
PSMA3   10000 perm   1 sec   (6689 perm/sec)   p_kst 2.254000e-01   p_cons 1.862000e-01   p_joint 9.040000e-02

Joint ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
Cons ci ratio: 5.812972e-02	ci left: 1.798374e-01	ci right 1.906543e-01	k: 3704	n:20000
KS ci ratio: 5.181454e-02	ci left: 2.167018e-01	ci right 2.282790e-01	k: 4449	n:20000
PSMA3   20000 perm   3 sec   (5900 perm/sec)   p_kst 2.224500e-01   p_cons 1.852000e-01   p_joint 9.790000e-02

Outputting figure to mutsig2_images.part000000000139/PSMA3.2_812_20000_0.22245_0.1852_0.0979.png
                gene_name: PSMA3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 89 percent done.
PSMB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
PSMB11   10000 perm   1 sec   (6673 perm/sec)   p_kst 4.906000e-01   p_cons 1.131000e-01   p_joint 9.426000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
KS ci ratio: 2.815790e-02	ci left: 4.851479e-01	ci right 4.990544e-01	k: 9842	n:20000
PSMB11   20000 perm   3 sec   (5870 perm/sec)   p_kst 4.921000e-01   p_cons 1.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMB11.2_907_20000_0.4921_0.1109_1.png
                gene_name: PSMB11
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PSMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
Cons ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
KS ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
PSMC2   10000 perm   2 sec   (6253 perm/sec)   p_kst 1.415000e-01   p_cons 2.328000e-01   p_joint 4.897000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC2.2_1350_10000_0.1415_0.2328_0.4897.png
                gene_name: PSMC2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 94 percent done.
PSMC3IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
Cons ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
KS ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
PSMC3IP   10000 perm   1 sec   (6979 perm/sec)   p_kst 4.957000e-01   p_cons 6.039000e-01   p_joint 9.659000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC3IP.2_686_10000_0.4957_0.6039_0.9659.png
                gene_name: PSMC3IP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 96 percent done.
PSMD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
PSMD13   10000 perm   2 sec   (6474 perm/sec)   p_kst 3.920000e-01   p_cons 2.929000e-01   p_joint 5.245000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD13.2_1264_10000_0.392_0.2929_0.5245.png
                gene_name: PSMD13
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 98 percent done.
PSMD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
Cons ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
PSMD14   10000 perm   2 sec   (6566 perm/sec)   p_kst 2.230000e-01   p_cons 5.712000e-01   p_joint 3.886000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD14.2_973_10000_0.223_0.5712_0.3886.png
                gene_name: PSMD14
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000139
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 139 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 4422346: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000140> was used as the working directory.
Started at Wed Oct 24 18:04:26 2012
Results reported at Wed Oct 24 19:16:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000140.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000140.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 140  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000140.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4790.84 sec.
    Max Memory :      5339 MB
    Max Swap   :      7708 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
140
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 140
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 140: processing genes 12576 - 12666
Calculating significance of each gene.
Using projection method.
12576	PSMG1	1
12577	PSMG2	1
12578	PSMG3	2.849053e-01
12579	PSORS1C1	1
12580	PSORS1C2	3.402204e-01
12581	PSPC1	1.916489e-01
12582	PSPH	3.267685e-02
12583	PSPN	1
12584	PSRC1	9.366839e-01
12585	PSTK	1.906663e-01
12586	PSTPIP1	1
12587	PSTPIP2	3.394278e-01
12588	PTAFR	6.144483e-01
12589	PTAR1	1
12590	PTBP1	8.935780e-01
12591	PTBP2	6.536797e-02
12592	PTCD1	9.759990e-01
12593	PTCD2	1
12594	PTCD3	1
12595	PTCH1	8.437854e-01
12596	PTCH2	9.976730e-01
12597	PTCHD1	5.641949e-01
12598	PTCHD2	1.632537e-01
12599	PTCHD3	1
12600	PTCRA	3.062751e-01
12601	PTDSS1	3.532309e-01
12602	PTDSS2	6.978982e-01
12603	PTEN	7.907736e-03
12604	PTER	2.102086e-01
12605	PTF1A	1
12606	PTGDR	3.679680e-01
12607	PTGDS	4.717330e-01
12608	PTGER2	1
12609	PTGER3	2.553628e-01
12610	PTGER4	4.318844e-01
12611	PTGES	1
12612	PTGES2	1
12613	PTGES3	5.530967e-01
12614	PTGFR	5.013628e-01
12615	PTGFRN	8.001333e-01
12616	PTGIR	1
12617	PTGIS	1.712391e-01
12618	PTGR1	4.469041e-01
12619	PTGR2	6.564477e-01
12620	PTGS1	9.610112e-01
12621	PTGS2	9.132327e-01
12622	PTH	1.125261e-03
12623	PTH1R	6.665096e-01
12624	PTH2	1
12625	PTH2R	1
12626	PTHLH	8.163265e-02
12627	PTK2	2.530608e-01
12628	PTK2B	5.902038e-01
12629	PTK6	7.467229e-01
12630	PTK7	8.389637e-01
In gene PTMA the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 282     n = 1	mu =   3.68e-07
12631	PTMA	4.677345e-02
12632	PTMS	1
12633	PTN	1.426681e-03
12634	PTOV1	1
12635	PTP4A1	3.077753e-01
12636	PTP4A2	3.536572e-01
12637	PTP4A3	1
12638	PTPDC1	1
12639	PTPLA	2.755406e-01
12640	PTPLAD1	1
12641	PTPLAD2	4.591065e-01
12642	PTPLB	4.038892e-01
12643	PTPMT1	7.025165e-01
12644	PTPN1	9.389384e-01
12645	PTPN11	1.118103e-01
12646	PTPN12	4.645430e-01
12647	PTPN13	9.997461e-01
12648	PTPN14	9.593951e-01
12649	PTPN18	1
12650	PTPN2	8.274285e-01
12651	PTPN21	1
12652	PTPN22	1
12653	PTPN23	9.999121e-01
12654	PTPN3	5.771154e-01
12655	PTPN4	4.456688e-01
12656	PTPN5	7.611774e-01
12657	PTPN6	5.655533e-01
12658	PTPN7	1
12659	PTPN9	3.372792e-01
12660	PTPRA	7.016880e-01
12661	PTPRB	9.905699e-01
In gene PTPRC the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 4054    n = 1	mu =   6.02e-07
12662	PTPRC	6.679425e-01
12663	PTPRCAP	4.443131e-01
12664	PTPRD	1
12665	PTPRE	8.725288e-01
12666	PTPRF	9.998302e-01
Done

Running MutSig 2:
Scatter job 140: processing genes 12576 - 12666
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
Cons ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
PTPRD   10000 perm   5 sec   (2182 perm/sec)   p_kst 2.772000e-01   p_cons 3.725000e-01   p_joint 3.788000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRD.52_5947_10000_0.2772_0.3725_0.3788.png
                gene_name: PTPRD
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 2 percent done.
PTPRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
Cons ci ratio: 2.887686e-03	ci left: 9.930731e-01	ci right 9.960275e-01	k: 9947	n:10000
KS ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
PTPRB   10000 perm   4 sec   (2647 perm/sec)   p_kst 3.363000e-01   p_cons 9.947000e-01   p_joint 6.104000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRB.30_6842_10000_0.3363_0.9947_0.6104.png
                gene_name: PTPRB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 3 percent done.
PTPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.758361e-02	ci left: 6.594774e-01	ci right 6.780242e-01	k: 6688	n:10000
Cons ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
PTPRC   10000 perm   3 sec   (3473 perm/sec)   p_kst 4.741000e-01   p_cons 7.331000e-01   p_joint 6.688000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRC.21_4054_10000_0.4741_0.7331_0.6688.png
                gene_name: PTPRC
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 5 percent done.
PTCHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
Cons ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
KS ci ratio: 1.112701e-02	ci left: 9.201785e-01	ci right 9.305721e-01	k: 9255	n:10000
PTCHD2   10000 perm   3 sec   (3751 perm/sec)   p_kst 9.255000e-01   p_cons 4.400000e-02   p_joint 1.423000e-01

Joint ci ratio: 6.227513e-02	ci left: 1.601760e-01	ci right 1.705215e-01	k: 3306	n:20000
Cons ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
KS ci ratio: 7.900305e-03	ci left: 9.211603e-01	ci right 9.285156e-01	k: 18498	n:20000
PTCHD2   20000 perm   6 sec   (3411 perm/sec)   p_kst 9.249000e-01   p_cons 4.465000e-02   p_joint 1.653000e-01

Joint ci ratio: 5.766691e-02	ci left: 1.296044e-01	ci right 1.373334e-01	k: 4003	n:30000
Cons ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
KS ci ratio: 6.981337e-03	ci left: 9.098895e-01	ci right 9.162969e-01	k: 27394	n:30000
PTCHD2   30000 perm   9 sec   (3284 perm/sec)   p_kst 9.131333e-01   p_cons 4.493333e-02   p_joint 1.334333e-01

Joint ci ratio: 4.042271e-02	ci left: 1.864881e-01	ci right 1.942069e-01	k: 7613	n:40000
Cons ci ratio: 8.726303e-02	ci left: 4.592550e-02	ci right 5.014042e-02	k: 1920	n:40000
KS ci ratio: 6.009881e-03	ci left: 9.112859e-01	ci right 9.168038e-01	k: 36563	n:40000
PTCHD2   40000 perm   13 sec   (3195 perm/sec)   p_kst 9.140750e-01   p_cons 4.800000e-02   p_joint 1.903250e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD2.17_4259_40000_0.91407_0.048_0.19032.png
                gene_name: PTCHD2
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 7 percent done.
PTGFRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
Cons ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
KS ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
PTGFRN   10000 perm   2 sec   (4946 perm/sec)   p_kst 3.130000e-02   p_cons 1.187000e-01   p_joint 1.910000e-02

Joint ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
PTGFRN   20000 perm   4 sec   (4447 perm/sec)   p_kst 3.195000e-02   p_cons 1.146000e-01   p_joint 2.175000e-02

Joint ci ratio: 1.409503e-01	ci left: 2.335931e-02	ci right 2.693346e-02	k: 753	n:30000
Cons ci ratio: 6.289646e-02	ci left: 1.110162e-01	ci right 1.182586e-01	k: 3438	n:30000
KS ci ratio: 1.239423e-01	ci left: 3.026347e-02	ci right 3.429444e-02	k: 967	n:30000
PTGFRN   30000 perm   7 sec   (4254 perm/sec)   p_kst 3.223333e-02   p_cons 1.146000e-01   p_joint 2.510000e-02

Joint ci ratio: 1.219013e-01	ci left: 2.366184e-02	ci right 2.675761e-02	k: 1007	n:40000
Cons ci ratio: 5.415930e-02	ci left: 1.126550e-01	ci right 1.189509e-01	k: 4631	n:40000
KS ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
PTGFRN   40000 perm   10 sec   (4128 perm/sec)   p_kst 3.220000e-02   p_cons 1.157750e-01   p_joint 2.517500e-02

Joint ci ratio: 1.245047e-01	ci left: 1.822840e-02	ci right 2.066785e-02	k: 971	n:50000
Cons ci ratio: 4.810401e-02	ci left: 1.144127e-01	ci right 1.200719e-01	k: 5861	n:50000
KS ci ratio: 9.589333e-02	ci left: 3.078708e-02	ci right 3.390752e-02	k: 1616	n:50000
PTGFRN   50000 perm   12 sec   (4022 perm/sec)   p_kst 3.232000e-02   p_cons 1.172200e-01   p_joint 1.942000e-02

Joint ci ratio: 1.209097e-01	ci left: 1.617474e-02	ci right 1.827233e-02	k: 1032	n:60000
Cons ci ratio: 4.375933e-02	ci left: 1.153793e-01	ci right 1.205577e-01	k: 7077	n:60000
KS ci ratio: 8.710785e-02	ci left: 3.122597e-02	ci right 3.408613e-02	k: 1958	n:60000
PTGFRN   60000 perm   15 sec   (3941 perm/sec)   p_kst 3.263333e-02   p_cons 1.179500e-01   p_joint 1.720000e-02

Joint ci ratio: 9.607697e-02	ci left: 2.211142e-02	ci right 2.435691e-02	k: 1625	n:70000
Cons ci ratio: 3.977067e-02	ci left: 1.194424e-01	ci right 1.243033e-01	k: 8530	n:70000
KS ci ratio: 8.022092e-02	ci left: 3.166089e-02	ci right 3.432086e-02	k: 2308	n:70000
PTGFRN   70000 perm   18 sec   (3859 perm/sec)   p_kst 3.297143e-02   p_cons 1.218571e-01   p_joint 2.321429e-02

Outputting figure to mutsig2_images.part000000000140/PTGFRN.11_2676_70000_0.032971_0.12186_0.023214.png
                gene_name: PTGFRN
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 8 percent done.
PTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
KS ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
PTK2   10000 perm   2 sec   (4104 perm/sec)   p_kst 1.241000e-01   p_cons 5.633000e-01   p_joint 2.226000e-01

Joint ci ratio: 5.435984e-02	ci left: 2.007100e-01	ci right 2.119755e-01	k: 4126	n:20000
Cons ci ratio: 2.486382e-02	ci left: 5.471787e-01	ci right 5.610056e-01	k: 11082	n:20000
KS ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
PTK2   20000 perm   5 sec   (3733 perm/sec)   p_kst 1.300000e-01   p_cons 5.541000e-01   p_joint 2.063000e-01

Outputting figure to mutsig2_images.part000000000140/PTK2.11_3349_20000_0.13_0.5541_0.2063.png
                gene_name: PTK2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 10 percent done.
PTPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
Cons ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
KS ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
PTPN13   10000 perm   3 sec   (3092 perm/sec)   p_kst 9.362000e-01   p_cons 3.435000e-01   p_joint 6.883000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN13.11_7661_10000_0.9362_0.3435_0.6883.png
                gene_name: PTPN13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 12 percent done.
PTPN14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 2.733497e-02	ci left: 6.635047e-01	ci right 6.819946e-01	k: 6728	n:10000
PTPN14   10000 perm   2 sec   (4298 perm/sec)   p_kst 6.728000e-01   p_cons 7.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN14.11_3636_10000_0.6728_0.7349_1.png
                gene_name: PTPN14
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
PTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
Cons ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
KS ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
PTBP2   10000 perm   2 sec   (4796 perm/sec)   p_kst 4.139000e-01   p_cons 7.920000e-01   p_joint 5.503000e-01

Outputting figure to mutsig2_images.part000000000140/PTBP2.8_1652_10000_0.4139_0.792_0.5503.png
                gene_name: PTBP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 15 percent done.
PTCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
Cons ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
PTCH1   10000 perm   3 sec   (3987 perm/sec)   p_kst 8.178000e-01   p_cons 9.380000e-02   p_joint 2.997000e-01

Joint ci ratio: 4.120428e-02	ci left: 3.050846e-01	ci right 3.179703e-01	k: 6230	n:20000
Cons ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
KS ci ratio: 1.310359e-02	ci left: 8.119242e-01	ci right 8.226834e-01	k: 16347	n:20000
PTCH1   20000 perm   5 sec   (3646 perm/sec)   p_kst 8.173500e-01   p_cons 9.140000e-02   p_joint 3.115000e-01

Outputting figure to mutsig2_images.part000000000140/PTCH1.8_4645_20000_0.81735_0.0914_0.3115.png
                gene_name: PTCH1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
PTEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118844e-02	ci left: 4.653707e-01	ci right 4.850438e-01	k: 4752	n:10000
Cons ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
KS ci ratio: 3.634289e-02	ci left: 5.278683e-01	ci right 5.475097e-01	k: 5377	n:10000
PTEN   10000 perm   2 sec   (4940 perm/sec)   p_kst 5.377000e-01   p_cons 2.579000e-01   p_joint 4.752000e-01

Outputting figure to mutsig2_images.part000000000140/PTEN.8_1248_10000_0.5377_0.2579_0.4752.png
                gene_name: PTEN
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
PTH2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
Cons ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
KS ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
PTH2R   10000 perm   2 sec   (5520 perm/sec)   p_kst 6.654000e-01   p_cons 5.440000e-02   p_joint 1.752000e-01

Joint ci ratio: 6.265001e-02	ci left: 1.585469e-01	ci right 1.688511e-01	k: 3273	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 1.966397e-02	ci left: 6.586110e-01	ci right 6.717410e-01	k: 13304	n:20000
PTH2R   20000 perm   4 sec   (4906 perm/sec)   p_kst 6.652000e-01   p_cons 5.425000e-02   p_joint 1.636500e-01

Joint ci ratio: 4.850778e-02	ci left: 1.744125e-01	ci right 1.831165e-01	k: 5362	n:30000
Cons ci ratio: 9.451003e-02	ci left: 5.166456e-02	ci right 5.682220e-02	k: 1626	n:30000
KS ci ratio: 1.599693e-02	ci left: 6.614670e-01	ci right 6.721673e-01	k: 20005	n:30000
PTH2R   30000 perm   6 sec   (4635 perm/sec)   p_kst 6.668333e-01   p_cons 5.420000e-02   p_joint 1.787333e-01

Outputting figure to mutsig2_images.part000000000140/PTH2R.8_1705_30000_0.66683_0.0542_0.17873.png
                gene_name: PTH2R
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 20 percent done.
PTK2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
PTK2B   10000 perm   2 sec   (4618 perm/sec)   p_kst 7.923000e-01   p_cons 1.906000e-01   p_joint 6.486000e-01

Outputting figure to mutsig2_images.part000000000140/PTK2B.8_3150_10000_0.7923_0.1906_0.6486.png
                gene_name: PTK2B
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
PTGER4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
KS ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
PTGER4   10000 perm   2 sec   (5092 perm/sec)   p_kst 4.127000e-01   p_cons 5.957000e-01   p_joint 5.718000e-01

Outputting figure to mutsig2_images.part000000000140/PTGER4.7_1475_10000_0.4127_0.5957_0.5718.png
                gene_name: PTGER4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 23 percent done.
PTPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
KS ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
PTPN3   10000 perm   2 sec   (4763 perm/sec)   p_kst 2.500000e-01   p_cons 2.320000e-02   p_joint 3.810000e-02

Joint ci ratio: 9.183013e-02	ci left: 7.965288e-02	ci right 8.736872e-02	k: 1669	n:20000
Cons ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
KS ci ratio: 4.804804e-02	ci left: 2.436634e-01	ci right 2.557095e-01	k: 4993	n:20000
PTPN3   20000 perm   5 sec   (4312 perm/sec)   p_kst 2.496500e-01   p_cons 2.215000e-02   p_joint 8.345000e-02

Joint ci ratio: 7.824643e-02	ci left: 7.417135e-02	ci right 8.024416e-02	k: 2315	n:30000
Cons ci ratio: 1.532874e-01	ci left: 1.969600e-02	ci right 2.299760e-02	k: 639	n:30000
KS ci ratio: 3.884414e-02	ci left: 2.484855e-01	ci right 2.583623e-01	k: 7602	n:30000
PTPN3   30000 perm   7 sec   (4112 perm/sec)   p_kst 2.534000e-01   p_cons 2.130000e-02   p_joint 7.716667e-02

Joint ci ratio: 8.674253e-02	ci left: 4.646411e-02	ci right 5.070174e-02	k: 1942	n:40000
Cons ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
KS ci ratio: 3.367417e-02	ci left: 2.487701e-01	ci right 2.573158e-01	k: 10121	n:40000
PTPN3   40000 perm   10 sec   (3999 perm/sec)   p_kst 2.530250e-01   p_cons 1.837500e-02   p_joint 4.855000e-02

Joint ci ratio: 7.693388e-02	ci left: 4.745786e-02	ci right 5.127467e-02	k: 2467	n:50000
Cons ci ratio: 1.300740e-01	ci left: 1.667845e-02	ci right 1.901801e-02	k: 891	n:50000
KS ci ratio: 3.021262e-02	ci left: 2.480597e-01	ci right 2.556892e-01	k: 12593	n:50000
PTPN3   50000 perm   13 sec   (3902 perm/sec)   p_kst 2.518600e-01   p_cons 1.782000e-02   p_joint 4.934000e-02

Joint ci ratio: 6.098028e-02	ci left: 6.246511e-02	ci right 6.641048e-02	k: 3865	n:60000
Cons ci ratio: 1.185382e-01	ci left: 1.683795e-02	ci right 1.897571e-02	k: 1073	n:60000
KS ci ratio: 2.755441e-02	ci left: 2.487454e-01	ci right 2.557119e-01	k: 15133	n:60000
PTPN3   60000 perm   16 sec   (3821 perm/sec)   p_kst 2.522167e-01   p_cons 1.788333e-02   p_joint 6.441667e-02

Joint ci ratio: 6.170305e-02	ci left: 5.282973e-02	ci right 5.620732e-02	k: 3815	n:70000
Cons ci ratio: 1.119960e-01	ci left: 1.623586e-02	ci right 1.817588e-02	k: 1203	n:70000
KS ci ratio: 2.549145e-02	ci left: 2.492848e-01	ci right 2.557357e-01	k: 17675	n:70000
PTPN3   70000 perm   19 sec   (3747 perm/sec)   p_kst 2.525000e-01   p_cons 1.718571e-02   p_joint 5.450000e-02

Joint ci ratio: 6.137809e-02	ci left: 4.702154e-02	ci right 5.001131e-02	k: 3880	n:80000
Cons ci ratio: 1.045311e-01	ci left: 1.637123e-02	ci right 1.818902e-02	k: 1381	n:80000
KS ci ratio: 2.383729e-02	ci left: 2.496168e-01	ci right 2.556512e-01	k: 20210	n:80000
PTPN3   80000 perm   22 sec   (3679 perm/sec)   p_kst 2.526250e-01   p_cons 1.726250e-02   p_joint 4.850000e-02

Joint ci ratio: 6.029607e-02	ci left: 4.350145e-02	ci right 4.621687e-02	k: 4036	n:90000
Cons ci ratio: 9.796943e-02	ci left: 1.662082e-02	ci right 1.834381e-02	k: 1572	n:90000
KS ci ratio: 2.249479e-02	ci left: 2.494427e-01	ci right 2.551288e-01	k: 22705	n:90000
PTPN3   90000 perm   25 sec   (3617 perm/sec)   p_kst 2.522778e-01   p_cons 1.746667e-02   p_joint 4.484444e-02

Outputting figure to mutsig2_images.part000000000140/PTPN3.7_2842_90000_0.25228_0.017467_0.044844.png
                gene_name: PTPN3
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 25 percent done.
PSPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
Cons ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
KS ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
PSPC1   10000 perm   2 sec   (5110 perm/sec)   p_kst 1.526000e-01   p_cons 7.270000e-02   p_joint 1.471000e-01

Joint ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
Cons ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
KS ci ratio: 6.557146e-02	ci left: 1.466063e-01	ci right 1.565952e-01	k: 3031	n:20000
PSPC1   20000 perm   4 sec   (4694 perm/sec)   p_kst 1.515500e-01   p_cons 7.235000e-02   p_joint 1.431500e-01

Outputting figure to mutsig2_images.part000000000140/PSPC1.6_1608_20000_0.15155_0.07235_0.14315.png
                gene_name: PSPC1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 27 percent done.
PTCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
Cons ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
KS ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
PTCHD1   10000 perm   2 sec   (4958 perm/sec)   p_kst 4.500000e-03   p_cons 9.803000e-01   p_joint 3.330000e-02

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 3.831132e-03	ci left: 9.793261e-01	ci right 9.831322e-01	k: 19626	n:20000
KS ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
PTCHD1   20000 perm   4 sec   (4458 perm/sec)   p_kst 4.700000e-03   p_cons 9.813000e-01   p_joint 1.535000e-02

Joint ci ratio: 1.544004e-01	ci left: 1.940733e-02	ci right 2.268634e-02	k: 630	n:30000
Cons ci ratio: 2.934198e-03	ci left: 9.819941e-01	ci right 9.849112e-01	k: 29505	n:30000
KS ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
PTCHD1   30000 perm   7 sec   (4247 perm/sec)   p_kst 4.566667e-03   p_cons 9.835000e-01   p_joint 2.100000e-02

Joint ci ratio: 1.522609e-01	ci left: 1.505773e-02	ci right 1.756320e-02	k: 651	n:40000
Cons ci ratio: 2.575439e-03	ci left: 9.817368e-01	ci right 9.842923e-01	k: 39322	n:40000
KS ci ratio: 2.956716e-01	ci left: 3.728767e-03	ci right 5.044783e-03	k: 174	n:40000
PTCHD1   40000 perm   10 sec   (4113 perm/sec)   p_kst 4.350000e-03   p_cons 9.830500e-01   p_joint 1.627500e-02

Joint ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
Cons ci ratio: 2.312185e-03	ci left: 9.817458e-01	ci right 9.840376e-01	k: 49146	n:50000
KS ci ratio: 2.725534e-01	ci left: 3.558858e-03	ci right 4.699898e-03	k: 205	n:50000
PTCHD1   50000 perm   12 sec   (4017 perm/sec)   p_kst 4.100000e-03   p_cons 9.829200e-01   p_joint 1.296000e-02

Joint ci ratio: 1.409137e-01	ci left: 1.183540e-02	ci right 1.364552e-02	k: 763	n:60000
Cons ci ratio: 2.109697e-03	ci left: 9.818650e-01	ci right 9.839546e-01	k: 58976	n:60000
KS ci ratio: 2.494151e-01	ci left: 3.588852e-03	ci right 4.626685e-03	k: 245	n:60000
PTCHD1   60000 perm   15 sec   (3932 perm/sec)   p_kst 4.083333e-03   p_cons 9.829333e-01   p_joint 1.271667e-02

Joint ci ratio: 1.495922e-01	ci left: 8.987184e-03	ci right 1.045389e-02	k: 679	n:70000
Cons ci ratio: 1.954181e-03	ci left: 9.819269e-01	ci right 9.838614e-01	k: 68804	n:70000
KS ci ratio: 2.321352e-01	ci left: 3.586301e-03	ci right 4.541245e-03	k: 283	n:70000
PTCHD1   70000 perm   18 sec   (3838 perm/sec)   p_kst 4.042857e-03   p_cons 9.829143e-01   p_joint 9.700000e-03

Joint ci ratio: 1.521868e-01	ci left: 7.598747e-03	ci right 8.862306e-03	k: 657	n:80000
Cons ci ratio: 1.818438e-03	ci left: 9.821700e-01	ci right 9.839697e-01	k: 78647	n:80000
KS ci ratio: 2.150152e-01	ci left: 3.692676e-03	ci right 4.593868e-03	k: 330	n:80000
PTCHD1   80000 perm   21 sec   (3766 perm/sec)   p_kst 4.125000e-03   p_cons 9.830875e-01   p_joint 8.212500e-03

Joint ci ratio: 1.263065e-01	ci left: 9.919666e-03	ci right 1.126771e-02	k: 952	n:90000
Cons ci ratio: 1.704544e-03	ci left: 9.824187e-01	ci right 9.841055e-01	k: 88495	n:90000
KS ci ratio: 1.993528e-01	ci left: 3.851319e-03	ci right 4.714446e-03	k: 384	n:90000
PTCHD1   90000 perm   24 sec   (3695 perm/sec)   p_kst 4.266667e-03   p_cons 9.832778e-01   p_joint 1.057778e-02

Joint ci ratio: 1.063658e-01	ci left: 1.268676e-02	ci right 1.412167e-02	k: 1339	n:100000
Cons ci ratio: 1.607550e-03	ci left: 9.826606e-01	ci right 9.842512e-01	k: 98347	n:100000
KS ci ratio: 1.897425e-01	ci left: 3.846711e-03	ci right 4.662455e-03	k: 424	n:100000
PTCHD1   100000 perm   28 sec   (3628 perm/sec)   p_kst 4.240000e-03   p_cons 9.834700e-01   p_joint 1.339000e-02

Joint ci ratio: 1.087986e-01	ci left: 1.102866e-02	ci right 1.230637e-02	k: 1282	n:110000
Cons ci ratio: 1.535994e-03	ci left: 9.826275e-01	ci right 9.841468e-01	k: 108174	n:110000
KS ci ratio: 1.787182e-01	ci left: 3.965318e-03	ci right 4.752076e-03	k: 478	n:110000
PTCHD1   110000 perm   31 sec   (3569 perm/sec)   p_kst 4.345455e-03   p_cons 9.834000e-01   p_joint 1.165455e-02

Joint ci ratio: 1.044175e-01	ci left: 1.100183e-02	ci right 1.222195e-02	k: 1392	n:120000
Cons ci ratio: 1.475067e-03	ci left: 9.825590e-01	ci right 9.840175e-01	k: 117996	n:120000
KS ci ratio: 1.711995e-01	ci left: 3.977523e-03	ci right 4.730073e-03	k: 521	n:120000
PTCHD1   120000 perm   34 sec   (3512 perm/sec)   p_kst 4.341667e-03   p_cons 9.833000e-01   p_joint 1.160000e-02

Joint ci ratio: 1.027270e-01	ci left: 1.050757e-02	ci right 1.165286e-02	k: 1439	n:130000
Cons ci ratio: 1.414849e-03	ci left: 9.826436e-01	ci right 9.840424e-01	k: 127836	n:130000
KS ci ratio: 1.636856e-01	ci left: 4.032702e-03	ci right 4.758909e-03	k: 570	n:130000
PTCHD1   130000 perm   38 sec   (3454 perm/sec)   p_kst 4.384615e-03   p_cons 9.833538e-01   p_joint 1.106923e-02

Joint ci ratio: 9.385402e-02	ci left: 1.172918e-02	ci right 1.289115e-02	k: 1722	n:140000
Cons ci ratio: 1.357862e-03	ci left: 9.828045e-01	ci right 9.841468e-01	k: 137688	n:140000
KS ci ratio: 1.578505e-01	ci left: 4.039441e-03	ci right 4.738474e-03	k: 613	n:140000
PTCHD1   140000 perm   41 sec   (3401 perm/sec)   p_kst 4.378571e-03   p_cons 9.834857e-01   p_joint 1.230000e-02

Joint ci ratio: 9.378295e-02	ci left: 1.097308e-02	ci right 1.205926e-02	k: 1726	n:150000
Cons ci ratio: 1.321419e-03	ci left: 9.825844e-01	ci right 9.838902e-01	k: 147487	n:150000
KS ci ratio: 1.530667e-01	ci left: 4.020028e-03	ci right 4.692685e-03	k: 652	n:150000
PTCHD1   150000 perm   45 sec   (3349 perm/sec)   p_kst 4.346667e-03   p_cons 9.832467e-01   p_joint 1.150667e-02

Joint ci ratio: 9.279053e-02	ci left: 1.051910e-02	ci right 1.154873e-02	k: 1764	n:160000
Cons ci ratio: 1.281011e-03	ci left: 9.825647e-01	ci right 9.838302e-01	k: 157313	n:160000
KS ci ratio: 1.497838e-01	ci left: 3.943147e-03	ci right 4.587520e-03	k: 681	n:160000
PTCHD1   160000 perm   49 sec   (3295 perm/sec)   p_kst 4.256250e-03   p_cons 9.832062e-01   p_joint 1.102500e-02

Joint ci ratio: 9.139277e-02	ci left: 1.021634e-02	ci right 1.120046e-02	k: 1819	n:170000
Cons ci ratio: 1.241879e-03	ci left: 9.826077e-01	ci right 9.838345e-01	k: 167149	n:170000
KS ci ratio: 1.445747e-01	ci left: 3.994493e-03	ci right 4.622596e-03	k: 731	n:170000
PTCHD1   170000 perm   52 sec   (3251 perm/sec)   p_kst 4.300000e-03   p_cons 9.832294e-01   p_joint 1.070000e-02

Joint ci ratio: 9.274197e-02	ci left: 9.371763e-03	ci right 1.028857e-02	k: 1768	n:180000
Cons ci ratio: 1.205515e-03	ci left: 9.826635e-01	ci right 9.838542e-01	k: 176988	n:180000
KS ci ratio: 1.403250e-01	ci left: 4.013671e-03	ci right 4.624685e-03	k: 776	n:180000
PTCHD1   180000 perm   56 sec   (3203 perm/sec)   p_kst 4.311111e-03   p_cons 9.832667e-01   p_joint 9.822222e-03

Joint ci ratio: 8.441915e-02	ci left: 1.074711e-02	ci right 1.169947e-02	k: 2131	n:190000
Cons ci ratio: 1.171976e-03	ci left: 9.827191e-01	ci right 9.838766e-01	k: 186828	n:190000
KS ci ratio: 1.364293e-01	ci left: 4.031071e-03	ci right 4.626314e-03	k: 821	n:190000
PTCHD1   190000 perm   60 sec   (3160 perm/sec)   p_kst 4.321053e-03   p_cons 9.833053e-01   p_joint 1.121579e-02

Joint ci ratio: 8.703862e-02	ci left: 9.602793e-03	ci right 1.048149e-02	k: 2007	n:200000
Cons ci ratio: 1.141606e-03	ci left: 9.827542e-01	ci right 9.838817e-01	k: 196665	n:200000
KS ci ratio: 1.326874e-01	ci left: 4.056610e-03	ci right 4.637900e-03	k: 868	n:200000
PTCHD1   200000 perm   64 sec   (3118 perm/sec)   p_kst 4.340000e-03   p_cons 9.833250e-01   p_joint 1.003500e-02

Joint ci ratio: 7.481349e-02	ci left: 1.242172e-02	ci right 1.339179e-02	k: 2709	n:210000
Cons ci ratio: 1.115096e-03	ci left: 9.827380e-01	ci right 9.838391e-01	k: 206492	n:210000
KS ci ratio: 1.292374e-01	ci left: 4.079919e-03	ci right 4.648182e-03	k: 915	n:210000
PTCHD1   210000 perm   68 sec   (3078 perm/sec)   p_kst 4.357143e-03   p_cons 9.832952e-01   p_joint 1.290000e-02

Joint ci ratio: 7.703877e-02	ci left: 1.118349e-02	ci right 1.208400e-02	k: 2558	n:220000
Cons ci ratio: 1.087786e-03	ci left: 9.828020e-01	ci right 9.838761e-01	k: 216336	n:220000
KS ci ratio: 1.264394e-01	ci left: 4.074871e-03	ci right 4.629222e-03	k: 956	n:220000
PTCHD1   220000 perm   72 sec   (3038 perm/sec)   p_kst 4.345455e-03   p_cons 9.833455e-01   p_joint 1.162727e-02

Joint ci ratio: 7.854634e-02	ci left: 1.029205e-02	ci right 1.113774e-02	k: 2463	n:230000
Cons ci ratio: 1.064075e-03	ci left: 9.828077e-01	ci right 9.838583e-01	k: 226168	n:230000
KS ci ratio: 1.241283e-01	ci left: 4.049316e-03	ci right 4.589380e-03	k: 992	n:230000
PTCHD1   230000 perm   77 sec   (2999 perm/sec)   p_kst 4.313043e-03   p_cons 9.833391e-01   p_joint 1.070870e-02

Joint ci ratio: 8.062245e-02	ci left: 9.360733e-03	ci right 1.015117e-02	k: 2340	n:240000
Cons ci ratio: 1.041320e-03	ci left: 9.828301e-01	ci right 9.838582e-01	k: 236004	n:240000
KS ci ratio: 1.216431e-01	ci left: 4.046176e-03	ci right 4.574239e-03	k: 1033	n:240000
PTCHD1   240000 perm   81 sec   (2961 perm/sec)   p_kst 4.304167e-03   p_cons 9.833500e-01   p_joint 9.750000e-03

Joint ci ratio: 7.018537e-02	ci left: 1.189125e-02	ci right 1.276011e-02	k: 3080	n:250000
Cons ci ratio: 1.019965e-03	ci left: 9.828509e-01	ci right 9.838578e-01	k: 245840	n:250000
KS ci ratio: 1.190790e-01	ci left: 4.058911e-03	ci right 4.576684e-03	k: 1078	n:250000
PTCHD1   250000 perm   86 sec   (2923 perm/sec)   p_kst 4.312000e-03   p_cons 9.833600e-01   p_joint 1.232000e-02

Joint ci ratio: 6.924196e-02	ci left: 1.175509e-02	ci right 1.260199e-02	k: 3165	n:260000
Cons ci ratio: 9.996362e-04	ci left: 9.828781e-01	ci right 9.838649e-01	k: 255678	n:260000
KS ci ratio: 1.168796e-01	ci left: 4.055837e-03	ci right 4.563002e-03	k: 1119	n:260000
PTCHD1   260000 perm   90 sec   (2886 perm/sec)   p_kst 4.303846e-03   p_cons 9.833769e-01   p_joint 1.217308e-02

Joint ci ratio: 6.875413e-02	ci left: 1.148710e-02	ci right 1.230862e-02	k: 3211	n:270000
Cons ci ratio: 9.822526e-04	ci left: 9.828434e-01	ci right 9.838129e-01	k: 265500	n:270000
KS ci ratio: 1.147978e-01	ci left: 4.053073e-03	ci right 4.550253e-03	k: 1160	n:270000
PTCHD1   270000 perm   95 sec   (2852 perm/sec)   p_kst 4.296296e-03   p_cons 9.833333e-01   p_joint 1.189259e-02

Joint ci ratio: 6.814917e-02	ci left: 1.128040e-02	ci right 1.207976e-02	k: 3269	n:280000
Cons ci ratio: 9.633228e-04	ci left: 9.828946e-01	ci right 9.838454e-01	k: 275345	n:280000
KS ci ratio: 1.127762e-01	ci left: 4.054051e-03	ci right 4.542011e-03	k: 1202	n:280000
PTCHD1   280000 perm   99 sec   (2815 perm/sec)   p_kst 4.292857e-03   p_cons 9.833750e-01   p_joint 1.167500e-02

Joint ci ratio: 6.255015e-02	ci left: 1.294393e-02	ci right 1.378308e-02	k: 3874	n:290000
Cons ci ratio: 9.489324e-04	ci left: 9.828200e-01	ci right 9.837565e-01	k: 285155	n:290000
KS ci ratio: 1.108578e-01	ci left: 4.055033e-03	ci right 4.534267e-03	k: 1244	n:290000
PTCHD1   290000 perm   104 sec   (2781 perm/sec)   p_kst 4.289655e-03   p_cons 9.832931e-01   p_joint 1.335862e-02

Joint ci ratio: 6.131013e-02	ci left: 1.303099e-02	ci right 1.385845e-02	k: 4032	n:300000
Cons ci ratio: 9.331625e-04	ci left: 9.828216e-01	ci right 9.837424e-01	k: 294986	n:300000
KS ci ratio: 1.088220e-01	ci left: 4.072230e-03	ci right 4.544091e-03	k: 1291	n:300000
PTCHD1   300000 perm   109 sec   (2747 perm/sec)   p_kst 4.303333e-03   p_cons 9.832867e-01   p_joint 1.344000e-02

Joint ci ratio: 6.118542e-02	ci left: 1.266774e-02	ci right 1.347044e-02	k: 4050	n:310000
Cons ci ratio: 9.178833e-04	ci left: 9.828329e-01	ci right 9.837386e-01	k: 304820	n:310000
KS ci ratio: 1.068144e-01	ci left: 4.094672e-03	ci right 4.559830e-03	k: 1340	n:310000
PTCHD1   310000 perm   114 sec   (2716 perm/sec)   p_kst 4.322581e-03   p_cons 9.832903e-01   p_joint 1.306452e-02

Joint ci ratio: 6.057266e-02	ci left: 1.252727e-02	ci right 1.331284e-02	k: 4133	n:320000
Cons ci ratio: 9.026433e-04	ci left: 9.828690e-01	ci right 9.837597e-01	k: 314662	n:320000
KS ci ratio: 1.051802e-01	ci left: 4.094484e-03	ci right 4.552064e-03	k: 1382	n:320000
PTCHD1   320000 perm   119 sec   (2683 perm/sec)   p_kst 4.318750e-03   p_cons 9.833188e-01   p_joint 1.291563e-02

Joint ci ratio: 5.866707e-02	ci left: 1.295671e-02	ci right 1.374278e-02	k: 4404	n:330000
Cons ci ratio: 8.885463e-04	ci left: 9.828877e-01	ci right 9.837644e-01	k: 324499	n:330000
KS ci ratio: 1.030394e-01	ci left: 4.141595e-03	ci right 4.594449e-03	k: 1440	n:330000
PTCHD1   330000 perm   124 sec   (2653 perm/sec)   p_kst 4.363636e-03   p_cons 9.833303e-01   p_joint 1.334545e-02

Joint ci ratio: 5.799561e-02	ci left: 1.287414e-02	ci right 1.364596e-02	k: 4507	n:340000
Cons ci ratio: 8.755606e-04	ci left: 9.828875e-01	ci right 9.837513e-01	k: 334330	n:340000
KS ci ratio: 1.015700e-01	ci left: 4.140152e-03	ci right 4.586008e-03	k: 1482	n:340000
PTCHD1   340000 perm   130 sec   (2624 perm/sec)   p_kst 4.358824e-03   p_cons 9.833235e-01   p_joint 1.325588e-02

Joint ci ratio: 5.727747e-02	ci left: 1.282731e-02	ci right 1.358649e-02	k: 4621	n:350000
Cons ci ratio: 8.641794e-04	ci left: 9.828469e-01	ci right 9.836994e-01	k: 344147	n:350000
KS ci ratio: 1.003603e-01	ci left: 4.122120e-03	ci right 4.560435e-03	k: 1518	n:350000
PTCHD1   350000 perm   135 sec   (2595 perm/sec)   p_kst 4.337143e-03   p_cons 9.832771e-01   p_joint 1.320286e-02

Joint ci ratio: 5.647669e-02	ci left: 1.283245e-02	ci right 1.358097e-02	k: 4753	n:360000
Cons ci ratio: 8.516422e-04	ci left: 9.828705e-01	ci right 9.837106e-01	k: 353986	n:360000
KS ci ratio: 9.922488e-02	ci left: 4.102410e-03	ci right 4.533407e-03	k: 1553	n:360000
PTCHD1   360000 perm   140 sec   (2567 perm/sec)   p_kst 4.313889e-03   p_cons 9.832944e-01   p_joint 1.320278e-02

Outputting figure to mutsig2_images.part000000000140/PTCHD1.6_2679_360000_0.0043139_0.98329_0.013203.png
                gene_name: PTCHD1
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 28 percent done.
PTGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
Cons ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
KS ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
PTGFR   10000 perm   2 sec   (5625 perm/sec)   p_kst 7.441000e-01   p_cons 4.300000e-01   p_joint 8.109000e-01

Outputting figure to mutsig2_images.part000000000140/PTGFR.6_1163_10000_0.7441_0.43_0.8109.png
                gene_name: PTGFR
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
PTPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
PTPN11   10000 perm   2 sec   (5546 perm/sec)   p_kst 1.800000e-03   p_cons 4.100000e-02   p_joint 8.200000e-03

Joint ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
Cons ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
PTPN11   20000 perm   4 sec   (4906 perm/sec)   p_kst 1.850000e-03   p_cons 4.195000e-02   p_joint 2.600000e-03

Joint ci ratio: 6.193828e-01	ci left: 9.245853e-04	ci right 1.776719e-03	k: 39	n:30000
Cons ci ratio: 1.098281e-01	ci left: 3.849196e-02	ci right 4.299753e-02	k: 1221	n:30000
KS ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
PTPN11   30000 perm   6 sec   (4693 perm/sec)   p_kst 1.966667e-03   p_cons 4.070000e-02   p_joint 1.300000e-03

Joint ci ratio: 6.820944e-01	ci left: 5.472618e-04	ci right 1.129175e-03	k: 32	n:40000
Cons ci ratio: 9.485163e-02	ci left: 3.900438e-02	ci right 4.291261e-02	k: 1637	n:40000
KS ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
PTPN11   40000 perm   9 sec   (4541 perm/sec)   p_kst 1.825000e-03   p_cons 4.092500e-02   p_joint 8.000000e-04

Joint ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
Cons ci ratio: 8.594928e-02	ci left: 3.822078e-02	ci right 4.167290e-02	k: 1996	n:50000
KS ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
PTPN11   50000 perm   11 sec   (4422 perm/sec)   p_kst 1.720000e-03   p_cons 3.992000e-02   p_joint 7.800000e-04

Joint ci ratio: 5.655722e-01	ci left: 5.756189e-04	ci right 1.041533e-03	k: 47	n:60000
Cons ci ratio: 7.869016e-02	ci left: 3.815164e-02	ci right 4.129308e-02	k: 2382	n:60000
KS ci ratio: 3.916699e-01	ci left: 1.341235e-03	ci right 2.008455e-03	k: 99	n:60000
PTPN11   60000 perm   14 sec   (4324 perm/sec)   p_kst 1.650000e-03   p_cons 3.970000e-02   p_joint 7.833333e-04

Joint ci ratio: 5.907723e-01	ci left: 4.445962e-04	ci right 8.273506e-04	k: 43	n:70000
Cons ci ratio: 7.333737e-02	ci left: 3.777432e-02	ci right 4.066404e-02	k: 2744	n:70000
KS ci ratio: 3.652389e-01	ci left: 1.343553e-03	ci right 1.956091e-03	k: 114	n:70000
PTPN11   70000 perm   17 sec   (4232 perm/sec)   p_kst 1.628571e-03   p_cons 3.920000e-02   p_joint 6.142857e-04

Joint ci ratio: 5.716192e-01	ci left: 4.210021e-04	ci right 7.668958e-04	k: 46	n:80000
Cons ci ratio: 6.886569e-02	ci left: 3.758292e-02	ci right 4.027565e-02	k: 3113	n:80000
KS ci ratio: 3.370930e-01	ci left: 1.403598e-03	ci right 1.983501e-03	k: 134	n:80000
PTPN11   80000 perm   19 sec   (4146 perm/sec)   p_kst 1.675000e-03   p_cons 3.891250e-02   p_joint 5.750000e-04

Joint ci ratio: 5.332814e-01	ci left: 4.411483e-04	ci right 7.702113e-04	k: 53	n:90000
Cons ci ratio: 6.504566e-02	ci left: 3.752577e-02	ci right 4.005962e-02	k: 3490	n:90000
KS ci ratio: 3.166420e-01	ci left: 1.431250e-03	ci right 1.979448e-03	k: 152	n:90000
PTPN11   90000 perm   22 sec   (4066 perm/sec)   p_kst 1.688889e-03   p_cons 3.877778e-02   p_joint 5.888889e-04

Joint ci ratio: 4.937155e-01	ci left: 4.753825e-04	ci right 7.947425e-04	k: 62	n:100000
Cons ci ratio: 6.156662e-02	ci left: 3.775923e-02	ci right 4.016760e-02	k: 3895	n:100000
KS ci ratio: 2.943829e-01	ci left: 1.509760e-03	ci right 2.039809e-03	k: 176	n:100000
PTPN11   100000 perm   25 sec   (3987 perm/sec)   p_kst 1.760000e-03   p_cons 3.895000e-02   p_joint 6.200000e-04

Joint ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
Cons ci ratio: 5.873430e-02	ci left: 3.777394e-02	ci right 4.006863e-02	k: 4280	n:110000
KS ci ratio: 2.790370e-01	ci left: 1.541266e-03	ci right 2.049216e-03	k: 196	n:110000
PTPN11   110000 perm   28 sec   (3913 perm/sec)   p_kst 1.781818e-03   p_cons 3.890909e-02   p_joint 5.545455e-04

Joint ci ratio: 4.717749e-01	ci left: 4.400649e-04	ci right 7.183305e-04	k: 68	n:120000
Cons ci ratio: 5.608519e-02	ci left: 3.801851e-02	ci right 4.022050e-02	k: 4693	n:120000
KS ci ratio: 2.640429e-01	ci left: 1.591460e-03	ci right 2.083116e-03	k: 219	n:120000
PTPN11   120000 perm   31 sec   (3841 perm/sec)   p_kst 1.825000e-03   p_cons 3.910833e-02   p_joint 5.666667e-04

Joint ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
Cons ci ratio: 5.414121e-02	ci left: 3.771112e-02	ci right 3.981721e-02	k: 5038	n:130000
KS ci ratio: 2.543982e-01	ci left: 1.591315e-03	ci right 2.062122e-03	k: 236	n:130000
PTPN11   130000 perm   34 sec   (3777 perm/sec)   p_kst 1.815385e-03   p_cons 3.875385e-02   p_joint 1.530769e-03

Joint ci ratio: 2.742539e-01	ci left: 1.257500e-03	ci right 1.663598e-03	k: 203	n:140000
Cons ci ratio: 5.236086e-02	ci left: 3.748406e-02	ci right 3.950654e-02	k: 5388	n:140000
KS ci ratio: 2.428814e-01	ci left: 1.631708e-03	ci right 2.089319e-03	k: 259	n:140000
PTPN11   140000 perm   38 sec   (3715 perm/sec)   p_kst 1.850000e-03   p_cons 3.848571e-02   p_joint 1.450000e-03

Joint ci ratio: 2.928187e-01	ci left: 1.018819e-03	ci right 1.374247e-03	k: 178	n:150000
Cons ci ratio: 5.068102e-02	ci left: 3.738047e-02	ci right 3.933076e-02	k: 5752	n:150000
KS ci ratio: 2.336277e-01	ci left: 1.654575e-03	ci right 2.098367e-03	k: 280	n:150000
PTPN11   150000 perm   41 sec   (3655 perm/sec)   p_kst 1.866667e-03   p_cons 3.834667e-02   p_joint 1.186667e-03

Joint ci ratio: 2.987356e-01	ci left: 9.146304e-04	ci right 1.241382e-03	k: 171	n:160000
Cons ci ratio: 4.905313e-02	ci left: 3.743898e-02	ci right 3.932780e-02	k: 6140	n:160000
KS ci ratio: 2.235108e-01	ci left: 1.704368e-03	ci right 2.138998e-03	k: 306	n:160000
PTPN11   160000 perm   45 sec   (3595 perm/sec)   p_kst 1.912500e-03   p_cons 3.837500e-02   p_joint 1.068750e-03

Joint ci ratio: 3.127046e-01	ci left: 7.793488e-04	ci right 1.073395e-03	k: 156	n:170000
Cons ci ratio: 4.753860e-02	ci left: 3.754382e-02	ci right 3.937785e-02	k: 6537	n:170000
KS ci ratio: 2.162363e-01	ci left: 1.720841e-03	ci right 2.143493e-03	k: 327	n:170000
PTPN11   170000 perm   48 sec   (3536 perm/sec)   p_kst 1.923529e-03   p_cons 3.845294e-02   p_joint 9.176471e-04

Joint ci ratio: 2.108428e-01	ci left: 1.714632e-03	ci right 2.123898e-03	k: 344	n:180000
Cons ci ratio: 4.631271e-02	ci left: 3.739059e-02	ci right 3.916877e-02	k: 6889	n:180000
KS ci ratio: 2.105373e-01	ci left: 1.719895e-03	ci right 2.129746e-03	k: 345	n:180000
PTPN11   180000 perm   52 sec   (3480 perm/sec)   p_kst 1.916667e-03   p_cons 3.827222e-02   p_joint 1.911111e-03

Joint ci ratio: 2.055495e-01	ci left: 1.714187e-03	ci right 2.111783e-03	k: 362	n:190000
Cons ci ratio: 4.499962e-02	ci left: 3.754038e-02	ci right 3.927374e-02	k: 7296	n:190000
KS ci ratio: 2.022275e-01	ci left: 1.774126e-03	ci right 2.178154e-03	k: 374	n:190000
PTPN11   190000 perm   55 sec   (3427 perm/sec)   p_kst 1.968421e-03   p_cons 3.840000e-02   p_joint 1.905263e-03

Joint ci ratio: 2.006358e-01	ci left: 1.713901e-03	ci right 2.100764e-03	k: 380	n:200000
Cons ci ratio: 4.385740e-02	ci left: 3.756698e-02	ci right 3.925643e-02	k: 7681	n:200000
KS ci ratio: 1.972916e-01	ci left: 1.775668e-03	ci right 2.168991e-03	k: 393	n:200000
PTPN11   200000 perm   59 sec   (3379 perm/sec)   p_kst 1.965000e-03   p_cons 3.840500e-02   p_joint 1.900000e-03

Joint ci ratio: 1.995980e-01	ci left: 1.650374e-03	ci right 2.020736e-03	k: 384	n:210000
Cons ci ratio: 4.272915e-02	ci left: 3.770938e-02	ci right 3.936053e-02	k: 8091	n:210000
KS ci ratio: 1.931696e-01	ci left: 1.768108e-03	ci right 2.150611e-03	k: 410	n:210000
PTPN11   210000 perm   63 sec   (3331 perm/sec)   p_kst 1.952381e-03   p_cons 3.852857e-02   p_joint 1.828571e-03

Joint ci ratio: 1.934141e-01	ci left: 1.683406e-03	ci right 2.048100e-03	k: 409	n:220000
Cons ci ratio: 4.173224e-02	ci left: 3.775384e-02	ci right 3.936744e-02	k: 8482	n:220000
KS ci ratio: 1.879799e-01	ci left: 1.787299e-03	ci right 2.162381e-03	k: 433	n:220000
PTPN11   220000 perm   67 sec   (3285 perm/sec)   p_kst 1.968182e-03   p_cons 3.855455e-02   p_joint 1.859091e-03

Joint ci ratio: 1.890824e-01	ci left: 1.688869e-03	ci right 2.045611e-03	k: 428	n:230000
Cons ci ratio: 4.078289e-02	ci left: 3.782928e-02	ci right 3.940846e-02	k: 8881	n:230000
KS ci ratio: 1.841996e-01	ci left: 1.784205e-03	ci right 2.150267e-03	k: 451	n:230000
PTPN11   230000 perm   71 sec   (3240 perm/sec)   p_kst 1.960870e-03   p_cons 3.861304e-02   p_joint 1.860870e-03

Joint ci ratio: 1.869198e-01	ci left: 1.658203e-03	ci right 2.004006e-03	k: 438	n:240000
Cons ci ratio: 3.994253e-02	ci left: 3.781215e-02	ci right 3.935735e-02	k: 9259	n:240000
KS ci ratio: 1.798733e-01	ci left: 1.797354e-03	ci right 2.156510e-03	k: 473	n:240000
PTPN11   240000 perm   75 sec   (3193 perm/sec)   p_kst 1.970833e-03   p_cons 3.857917e-02   p_joint 1.825000e-03

Joint ci ratio: 1.960884e-01	ci left: 1.439525e-03	ci right 1.756210e-03	k: 398	n:250000
Cons ci ratio: 3.910146e-02	ci left: 3.789181e-02	ci right 3.940691e-02	k: 9661	n:250000
KS ci ratio: 1.758382e-01	ci left: 1.809544e-03	ci right 2.162162e-03	k: 495	n:250000
PTPN11   250000 perm   79 sec   (3151 perm/sec)   p_kst 1.980000e-03   p_cons 3.864400e-02   p_joint 1.592000e-03

Joint ci ratio: 1.956041e-01	ci left: 1.391470e-03	ci right 1.696737e-03	k: 400	n:260000
Cons ci ratio: 3.839081e-02	ci left: 3.781322e-02	ci right 3.929709e-02	k: 10023	n:260000
KS ci ratio: 1.712368e-01	ci left: 1.839285e-03	ci right 2.187351e-03	k: 522	n:260000
PTPN11   260000 perm   84 sec   (3111 perm/sec)   p_kst 2.007692e-03   p_cons 3.855000e-02   p_joint 1.538462e-03

Joint ci ratio: 1.929768e-01	ci left: 1.378692e-03	ci right 1.676616e-03	k: 411	n:270000
Cons ci ratio: 3.762908e-02	ci left: 3.791318e-02	ci right 3.937082e-02	k: 10432	n:270000
KS ci ratio: 1.680537e-01	ci left: 1.842092e-03	ci right 2.183553e-03	k: 542	n:270000
PTPN11   270000 perm   88 sec   (3071 perm/sec)   p_kst 2.007407e-03   p_cons 3.863704e-02   p_joint 1.522222e-03

Joint ci ratio: 1.902275e-01	ci left: 1.370254e-03	ci right 1.661649e-03	k: 423	n:280000
Cons ci ratio: 3.693577e-02	ci left: 3.795671e-02	ci right 3.938857e-02	k: 10827	n:280000
KS ci ratio: 1.656325e-01	ci left: 1.831059e-03	ci right 2.165097e-03	k: 558	n:280000
PTPN11   280000 perm   92 sec   (3028 perm/sec)   p_kst 1.992857e-03   p_cons 3.866786e-02   p_joint 1.510714e-03

Joint ci ratio: 1.927529e-01	ci left: 1.286886e-03	ci right 1.564610e-03	k: 412	n:290000
Cons ci ratio: 3.626934e-02	ci left: 3.801798e-02	ci right 3.942574e-02	k: 11228	n:290000
KS ci ratio: 1.631708e-01	ci left: 1.824128e-03	ci right 2.151470e-03	k: 575	n:290000
PTPN11   290000 perm   97 sec   (2990 perm/sec)   p_kst 1.982759e-03   p_cons 3.871724e-02   p_joint 1.420690e-03

Joint ci ratio: 1.889033e-01	ci left: 1.297950e-03	ci right 1.571826e-03	k: 429	n:300000
Cons ci ratio: 3.568403e-02	ci left: 3.797955e-02	ci right 3.936271e-02	k: 11600	n:300000
KS ci ratio: 1.596066e-01	ci left: 1.846492e-03	ci right 2.169916e-03	k: 601	n:300000
PTPN11   300000 perm   102 sec   (2948 perm/sec)   p_kst 2.003333e-03   p_cons 3.866667e-02   p_joint 1.430000e-03

Joint ci ratio: 2.835534e-01	ci left: 5.288698e-04	ci right 7.064882e-04	k: 190	n:310000
Cons ci ratio: 3.510940e-02	ci left: 3.797895e-02	ci right 3.933937e-02	k: 11983	n:310000
KS ci ratio: 1.623364e-01	ci left: 1.725001e-03	ci right 2.032817e-03	k: 581	n:310000
PTPN11   310000 perm   106 sec   (2912 perm/sec)   p_kst 1.874194e-03   p_cons 3.865484e-02   p_joint 6.129032e-04

Joint ci ratio: 2.806310e-01	ci left: 5.239582e-04	ci right 6.977928e-04	k: 194	n:320000
Cons ci ratio: 3.452974e-02	ci left: 3.804673e-02	ci right 3.938664e-02	k: 12388	n:320000
KS ci ratio: 1.598830e-01	ci left: 1.725077e-03	ci right 2.027808e-03	k: 599	n:320000
PTPN11   320000 perm   111 sec   (2877 perm/sec)   p_kst 1.871875e-03   p_cons 3.871250e-02   p_joint 6.062500e-04

Joint ci ratio: 2.697772e-01	ci left: 5.532225e-04	ci right 7.284668e-04	k: 210	n:330000
Cons ci ratio: 3.400414e-02	ci left: 3.805348e-02	ci right 3.937282e-02	k: 12774	n:330000
KS ci ratio: 1.576654e-01	ci left: 1.722270e-03	ci right 2.019920e-03	k: 616	n:330000
PTPN11   330000 perm   116 sec   (2843 perm/sec)   p_kst 1.866667e-03   p_cons 3.870909e-02   p_joint 6.363636e-04

Joint ci ratio: 2.717195e-01	ci left: 5.287257e-04	ci right 6.976217e-04	k: 207	n:340000
Cons ci ratio: 3.348331e-02	ci left: 3.810082e-02	ci right 3.940118e-02	k: 13174	n:340000
KS ci ratio: 1.550484e-01	ci left: 1.730964e-03	ci right 2.024689e-03	k: 637	n:340000
PTPN11   340000 perm   121 sec   (2810 perm/sec)   p_kst 1.873529e-03   p_cons 3.874706e-02   p_joint 6.088235e-04

Joint ci ratio: 2.723779e-01	ci left: 5.109563e-04	ci right 6.746391e-04	k: 206	n:350000
Cons ci ratio: 3.303002e-02	ci left: 3.804639e-02	ci right 3.932698e-02	k: 13539	n:350000
KS ci ratio: 1.530235e-01	ci left: 1.728207e-03	ci right 2.017283e-03	k: 654	n:350000
PTPN11   350000 perm   126 sec   (2777 perm/sec)   p_kst 1.868571e-03   p_cons 3.868286e-02   p_joint 5.885714e-04

Joint ci ratio: 2.685141e-01	ci left: 5.122998e-04	ci right 6.736931e-04	k: 212	n:360000
Cons ci ratio: 3.259466e-02	ci left: 3.799510e-02	ci right 3.925679e-02	k: 13904	n:360000
KS ci ratio: 1.518704e-01	ci left: 1.706918e-03	ci right 1.990086e-03	k: 664	n:360000
PTPN11   360000 perm   131 sec   (2746 perm/sec)   p_kst 1.844444e-03   p_cons 3.862222e-02   p_joint 5.888889e-04

Joint ci ratio: 2.285279e-01	ci left: 7.038349e-04	ci right 8.879122e-04	k: 293	n:370000
Cons ci ratio: 3.214796e-02	ci left: 3.801105e-02	ci right 3.925565e-02	k: 14293	n:370000
KS ci ratio: 1.490924e-01	ci left: 1.725810e-03	ci right 2.006408e-03	k: 689	n:370000
PTPN11   370000 perm   136 sec   (2716 perm/sec)   p_kst 1.862162e-03   p_cons 3.862973e-02   p_joint 7.918919e-04

Joint ci ratio: 2.251080e-01	ci left: 7.076517e-04	ci right 8.895734e-04	k: 302	n:380000
Cons ci ratio: 3.170902e-02	ci left: 3.804978e-02	ci right 3.927832e-02	k: 14691	n:380000
KS ci ratio: 1.469773e-01	ci left: 1.731076e-03	ci right 2.008187e-03	k: 709	n:380000
PTPN11   380000 perm   142 sec   (2685 perm/sec)   p_kst 1.865789e-03   p_cons 3.866053e-02   p_joint 7.947368e-04

Joint ci ratio: 2.221939e-01	ci left: 7.088705e-04	ci right 8.884239e-04	k: 310	n:390000
Cons ci ratio: 3.129299e-02	ci left: 3.807390e-02	ci right 3.928681e-02	k: 15084	n:390000
KS ci ratio: 1.455502e-01	ci left: 1.721273e-03	ci right 1.993906e-03	k: 723	n:390000
PTPN11   390000 perm   147 sec   (2655 perm/sec)   p_kst 1.853846e-03   p_cons 3.867692e-02   p_joint 7.948718e-04

Joint ci ratio: 2.190467e-01	ci left: 7.124056e-04	ci right 8.899544e-04	k: 319	n:400000
Cons ci ratio: 3.090433e-02	ci left: 3.806963e-02	ci right 3.926707e-02	k: 15466	n:400000
KS ci ratio: 1.440661e-01	ci left: 1.714382e-03	ci right 1.982917e-03	k: 738	n:400000
PTPN11   400000 perm   152 sec   (2627 perm/sec)   p_kst 1.845000e-03   p_cons 3.866500e-02   p_joint 7.975000e-04

Joint ci ratio: 1.709730e-01	ci left: 1.171010e-03	ci right 1.392232e-03	k: 524	n:410000
Cons ci ratio: 3.052981e-02	ci left: 3.806565e-02	ci right 3.924820e-02	k: 15848	n:410000
KS ci ratio: 1.417812e-01	ci left: 1.729012e-03	ci right 1.995180e-03	k: 762	n:410000
PTPN11   410000 perm   158 sec   (2598 perm/sec)   p_kst 1.858537e-03   p_cons 3.865366e-02   p_joint 1.278049e-03

Joint ci ratio: 1.739880e-01	ci left: 1.102118e-03	ci right 1.314383e-03	k: 506	n:420000
Cons ci ratio: 3.017341e-02	ci left: 3.805012e-02	ci right 3.921816e-02	k: 16225	n:420000
KS ci ratio: 1.398691e-01	ci left: 1.736084e-03	ci right 1.999436e-03	k: 783	n:420000
PTPN11   420000 perm   163 sec   (2570 perm/sec)   p_kst 1.864286e-03   p_cons 3.863095e-02   p_joint 1.204762e-03

Joint ci ratio: 1.722975e-01	ci left: 1.098735e-03	ci right 1.308079e-03	k: 516	n:430000
Cons ci ratio: 2.978632e-02	ci left: 3.814161e-02	ci right 3.929717e-02	k: 16648	n:430000
KS ci ratio: 1.382907e-01	ci left: 1.736114e-03	ci right 1.996254e-03	k: 801	n:430000
PTPN11   430000 perm   169 sec   (2543 perm/sec)   p_kst 1.862791e-03   p_cons 3.871628e-02   p_joint 1.200000e-03

Joint ci ratio: 1.708177e-01	ci left: 1.093340e-03	ci right 1.299682e-03	k: 525	n:440000
Cons ci ratio: 2.944426e-02	ci left: 3.815230e-02	ci right 3.929469e-02	k: 17037	n:440000
KS ci ratio: 1.375227e-01	ci left: 1.716404e-03	ci right 1.972046e-03	k: 810	n:440000
PTPN11   440000 perm   175 sec   (2517 perm/sec)   p_kst 1.840909e-03   p_cons 3.872045e-02   p_joint 1.193182e-03

Joint ci ratio: 1.685885e-01	ci left: 1.098834e-03	ci right 1.303231e-03	k: 539	n:450000
Cons ci ratio: 2.913199e-02	ci left: 3.811625e-02	ci right 3.924525e-02	k: 17405	n:450000
KS ci ratio: 1.356940e-01	ci left: 1.725480e-03	ci right 1.978780e-03	k: 832	n:450000
PTPN11   450000 perm   181 sec   (2490 perm/sec)   p_kst 1.848889e-03   p_cons 3.867778e-02   p_joint 1.197778e-03

Joint ci ratio: 1.672015e-01	ci left: 1.093689e-03	ci right 1.295287e-03	k: 548	n:460000
Cons ci ratio: 2.879492e-02	ci left: 3.817034e-02	ci right 3.928765e-02	k: 17814	n:460000
KS ci ratio: 1.344891e-01	ci left: 1.719476e-03	ci right 1.969474e-03	k: 847	n:460000
PTPN11   460000 perm   187 sec   (2465 perm/sec)   p_kst 1.841304e-03   p_cons 3.872609e-02   p_joint 1.191304e-03

Joint ci ratio: 1.661465e-01	ci left: 1.084691e-03	ci right 1.283243e-03	k: 555	n:470000
Cons ci ratio: 2.851570e-02	ci left: 3.810176e-02	ci right 3.920607e-02	k: 18166	n:470000
KS ci ratio: 1.325485e-01	ci left: 1.734307e-03	ci right 1.982536e-03	k: 872	n:470000
PTPN11   470000 perm   193 sec   (2439 perm/sec)   p_kst 1.855319e-03   p_cons 3.865106e-02   p_joint 1.180851e-03

Joint ci ratio: 1.456764e-01	ci left: 1.396509e-03	ci right 1.617911e-03	k: 722	n:480000
Cons ci ratio: 2.820329e-02	ci left: 3.814368e-02	ci right 3.923690e-02	k: 18570	n:480000
KS ci ratio: 1.312029e-01	ci left: 1.734439e-03	ci right 1.979970e-03	k: 890	n:480000
PTPN11   480000 perm   199 sec   (2415 perm/sec)   p_kst 1.854167e-03   p_cons 3.868750e-02   p_joint 1.504167e-03

Joint ci ratio: 1.492349e-01	ci left: 1.301176e-03	ci right 1.512953e-03	k: 688	n:490000
Cons ci ratio: 2.793311e-02	ci left: 3.809882e-02	ci right 3.918012e-02	k: 18932	n:490000
KS ci ratio: 1.295410e-01	ci left: 1.744450e-03	ci right 1.988031e-03	k: 913	n:490000
PTPN11   490000 perm   205 sec   (2390 perm/sec)   p_kst 1.863265e-03   p_cons 3.863673e-02   p_joint 1.404082e-03

Joint ci ratio: 1.472181e-01	ci left: 1.311744e-03	ci right 1.522101e-03	k: 707	n:500000
Cons ci ratio: 2.766010e-02	ci left: 3.808361e-02	ci right 3.915375e-02	k: 19308	n:500000
KS ci ratio: 1.283530e-01	ci left: 1.742464e-03	ci right 1.983366e-03	k: 930	n:500000
PTPN11   500000 perm   211 sec   (2367 perm/sec)   p_kst 1.860000e-03   p_cons 3.861600e-02   p_joint 1.414000e-03

Joint ci ratio: 1.457838e-01	ci left: 1.312468e-03	ci right 1.520713e-03	k: 721	n:510000
Cons ci ratio: 2.740146e-02	ci left: 3.805152e-02	ci right 3.911060e-02	k: 19675	n:510000
KS ci ratio: 1.273318e-01	ci left: 1.736769e-03	ci right 1.974829e-03	k: 945	n:510000
PTPN11   510000 perm   218 sec   (2344 perm/sec)   p_kst 1.852941e-03   p_cons 3.857843e-02   p_joint 1.413725e-03

Joint ci ratio: 1.441946e-01	ci left: 1.316882e-03	ci right 1.523353e-03	k: 737	n:520000
Cons ci ratio: 2.715981e-02	ci left: 3.799396e-02	ci right 3.904196e-02	k: 20028	n:520000
KS ci ratio: 1.259413e-01	ci left: 1.742476e-03	ci right 1.978515e-03	k: 966	n:520000
PTPN11   520000 perm   224 sec   (2322 perm/sec)   p_kst 1.857692e-03   p_cons 3.851538e-02   p_joint 1.417308e-03

Joint ci ratio: 1.429413e-01	ci left: 1.315682e-03	ci right 1.520019e-03	k: 750	n:530000
Cons ci ratio: 2.688537e-02	ci left: 3.804546e-02	ci right 3.908412e-02	k: 20438	n:530000
KS ci ratio: 1.245323e-01	ci left: 1.749808e-03	ci right 1.983993e-03	k: 988	n:530000
PTPN11   530000 perm   231 sec   (2299 perm/sec)   p_kst 1.864151e-03   p_cons 3.856226e-02   p_joint 1.415094e-03

Joint ci ratio: 1.413501e-01	ci left: 1.321680e-03	ci right 1.524471e-03	k: 767	n:540000
Cons ci ratio: 2.664368e-02	ci left: 3.802703e-02	ci right 3.905571e-02	k: 20811	n:540000
KS ci ratio: 1.230476e-01	ci left: 1.760473e-03	ci right 1.993072e-03	k: 1012	n:540000
PTPN11   540000 perm   237 sec   (2278 perm/sec)   p_kst 1.874074e-03   p_cons 3.853889e-02   p_joint 1.420370e-03

Joint ci ratio: 1.399001e-01	ci left: 1.325717e-03	ci right 1.526866e-03	k: 783	n:550000
Cons ci ratio: 2.638444e-02	ci left: 3.807615e-02	ci right 3.909599e-02	k: 21221	n:550000
KS ci ratio: 1.215561e-01	ci left: 1.772529e-03	ci right 2.003678e-03	k: 1037	n:550000
PTPN11   550000 perm   244 sec   (2256 perm/sec)   p_kst 1.885455e-03   p_cons 3.858364e-02   p_joint 1.423636e-03

Joint ci ratio: 1.420032e-01	ci left: 1.262417e-03	ci right 1.457086e-03	k: 760	n:560000
Cons ci ratio: 2.613765e-02	ci left: 3.810937e-02	ci right 3.912041e-02	k: 21623	n:560000
KS ci ratio: 1.205730e-01	ci left: 1.770314e-03	ci right 1.999174e-03	k: 1054	n:560000
PTPN11   560000 perm   251 sec   (2235 perm/sec)   p_kst 1.882143e-03   p_cons 3.861250e-02   p_joint 1.357143e-03

Joint ci ratio: 1.403524e-01	ci left: 1.270734e-03	ci right 1.464216e-03	k: 778	n:570000
Cons ci ratio: 2.591296e-02	ci left: 3.809788e-02	ci right 3.909980e-02	k: 22000	n:570000
KS ci ratio: 1.194460e-01	ci left: 1.773291e-03	ci right 2.000241e-03	k: 1074	n:570000
PTPN11   570000 perm   257 sec   (2215 perm/sec)   p_kst 1.884211e-03   p_cons 3.859649e-02   p_joint 1.364912e-03

Joint ci ratio: 1.392840e-01	ci left: 1.268790e-03	ci right 1.460384e-03	k: 790	n:580000
Cons ci ratio: 2.570232e-02	ci left: 3.806284e-02	ci right 3.905557e-02	k: 22363	n:580000
KS ci ratio: 1.181879e-01	ci left: 1.781194e-03	ci right 2.006587e-03	k: 1097	n:580000
PTPN11   580000 perm   264 sec   (2195 perm/sec)   p_kst 1.891379e-03   p_cons 3.855690e-02   p_joint 1.362069e-03

Joint ci ratio: 1.398176e-01	ci left: 1.237469e-03	ci right 1.425109e-03	k: 784	n:590000
Cons ci ratio: 2.550025e-02	ci left: 3.801890e-02	ci right 3.900258e-02	k: 22720	n:590000
KS ci ratio: 1.171784e-01	ci left: 1.782260e-03	ci right 2.005728e-03	k: 1116	n:590000
PTPN11   590000 perm   271 sec   (2174 perm/sec)   p_kst 1.891525e-03   p_cons 3.850847e-02   p_joint 1.328814e-03

Joint ci ratio: 1.384138e-01	ci left: 1.242584e-03	ci right 1.428951e-03	k: 800	n:600000
Cons ci ratio: 2.527156e-02	ci left: 3.806758e-02	ci right 3.904355e-02	k: 23132	n:600000
KS ci ratio: 1.160409e-01	ci left: 1.788153e-03	ci right 2.010034e-03	k: 1138	n:600000
PTPN11   600000 perm   279 sec   (2154 perm/sec)   p_kst 1.896667e-03   p_cons 3.855333e-02   p_joint 1.333333e-03

Joint ci ratio: 1.367167e-01	ci left: 1.253872e-03	ci right 1.439440e-03	k: 820	n:610000
Cons ci ratio: 2.506386e-02	ci left: 3.807069e-02	ci right 3.903861e-02	k: 23517	n:610000
KS ci ratio: 1.145904e-01	ci left: 1.805009e-03	ci right 2.025993e-03	k: 1167	n:610000
PTPN11   610000 perm   286 sec   (2135 perm/sec)   p_kst 1.913115e-03   p_cons 3.855246e-02   p_joint 1.344262e-03

Joint ci ratio: 1.392901e-01	ci left: 1.186929e-03	ci right 1.366170e-03	k: 790	n:620000
Cons ci ratio: 2.486607e-02	ci left: 3.805931e-02	ci right 3.901920e-02	k: 23893	n:620000
KS ci ratio: 1.136696e-01	ci left: 1.805667e-03	ci right 2.024836e-03	k: 1186	n:620000
PTPN11   620000 perm   293 sec   (2116 perm/sec)   p_kst 1.912903e-03   p_cons 3.853710e-02   p_joint 1.274194e-03

Joint ci ratio: 1.383318e-01	ci left: 1.184943e-03	ci right 1.362551e-03	k: 801	n:630000
Cons ci ratio: 2.466286e-02	ci left: 3.807830e-02	ci right 3.903071e-02	k: 24288	n:630000
KS ci ratio: 1.125837e-01	ci left: 1.812481e-03	ci right 2.030236e-03	k: 1209	n:630000
PTPN11   630000 perm   300 sec   (2098 perm/sec)   p_kst 1.919048e-03   p_cons 3.855238e-02   p_joint 1.271429e-03

Joint ci ratio: 1.381608e-01	ci left: 1.169444e-03	ci right 1.344495e-03	k: 803	n:640000
Cons ci ratio: 2.447899e-02	ci left: 3.805324e-02	ci right 3.899782e-02	k: 24655	n:640000
KS ci ratio: 1.115737e-01	ci left: 1.817572e-03	ci right 2.033851e-03	k: 1231	n:640000
PTPN11   640000 perm   308 sec   (2079 perm/sec)   p_kst 1.923438e-03   p_cons 3.852344e-02   p_joint 1.254687e-03

Joint ci ratio: 1.451036e-01	ci left: 1.040150e-03	ci right 1.204349e-03	k: 728	n:650000
Cons ci ratio: 2.430927e-02	ci left: 3.799838e-02	ci right 3.893497e-02	k: 25002	n:650000
KS ci ratio: 1.104142e-01	ci left: 1.828500e-03	ci right 2.043670e-03	k: 1257	n:650000
PTPN11   650000 perm   315 sec   (2061 perm/sec)   p_kst 1.933846e-03   p_cons 3.846462e-02   p_joint 1.120000e-03

Joint ci ratio: 1.434402e-01	ci left: 1.049218e-03	ci right 1.212787e-03	k: 745	n:660000
Cons ci ratio: 2.410697e-02	ci left: 3.805517e-02	ci right 3.898525e-02	k: 25422	n:660000
KS ci ratio: 1.095038e-01	ci left: 1.831738e-03	ci right 2.045398e-03	k: 1278	n:660000
PTPN11   660000 perm   323 sec   (2043 perm/sec)   p_kst 1.936364e-03   p_cons 3.851818e-02   p_joint 1.128788e-03

Joint ci ratio: 1.427723e-01	ci left: 1.043631e-03	ci right 1.205508e-03	k: 752	n:670000
Cons ci ratio: 2.389953e-02	ci left: 3.814146e-02	ci right 3.906552e-02	k: 25863	n:670000
KS ci ratio: 1.090366e-01	ci left: 1.820368e-03	ci right 2.031737e-03	k: 1289	n:670000
PTPN11   670000 perm   331 sec   (2025 perm/sec)   p_kst 1.923881e-03   p_cons 3.860149e-02   p_joint 1.122388e-03

Joint ci ratio: 1.432504e-01	ci left: 1.021193e-03	ci right 1.180165e-03	k: 747	n:680000
Cons ci ratio: 2.373162e-02	ci left: 3.811851e-02	ci right 3.903543e-02	k: 26231	n:680000
KS ci ratio: 1.079125e-01	ci left: 1.832227e-03	ci right 2.042641e-03	k: 1316	n:680000
PTPN11   680000 perm   339 sec   (2008 perm/sec)   p_kst 1.935294e-03   p_cons 3.857500e-02   p_joint 1.098529e-03

Joint ci ratio: 1.412799e-01	ci left: 1.035745e-03	ci right 1.194578e-03	k: 768	n:690000
Cons ci ratio: 2.355064e-02	ci left: 3.814812e-02	ci right 3.905866e-02	k: 26635	n:690000
KS ci ratio: 1.068225e-01	ci left: 1.843753e-03	ci right 2.053218e-03	k: 1343	n:690000
PTPN11   690000 perm   347 sec   (1991 perm/sec)   p_kst 1.946377e-03   p_cons 3.860145e-02   p_joint 1.113043e-03

Joint ci ratio: 1.418361e-01	ci left: 1.012680e-03	ci right 1.168639e-03	k: 762	n:700000
Cons ci ratio: 2.338228e-02	ci left: 3.814992e-02	ci right 3.905391e-02	k: 27020	n:700000
KS ci ratio: 1.060754e-01	ci left: 1.843834e-03	ci right 2.051751e-03	k: 1362	n:700000
PTPN11   700000 perm   354 sec   (1975 perm/sec)   p_kst 1.945714e-03   p_cons 3.860000e-02   p_joint 1.088571e-03

Joint ci ratio: 1.409157e-01	ci left: 1.012003e-03	ci right 1.166761e-03	k: 772	n:710000
Cons ci ratio: 2.321924e-02	ci left: 3.814609e-02	ci right 3.904360e-02	k: 27401	n:710000
KS ci ratio: 1.052293e-01	ci left: 1.848032e-03	ci right 2.054657e-03	k: 1384	n:710000
PTPN11   710000 perm   363 sec   (1958 perm/sec)   p_kst 1.949296e-03   p_cons 3.859296e-02   p_joint 1.087324e-03

Joint ci ratio: 1.397453e-01	ci left: 1.015370e-03	ci right 1.169245e-03	k: 785	n:720000
Cons ci ratio: 2.306863e-02	ci left: 3.811338e-02	ci right 3.900423e-02	k: 27761	n:720000
KS ci ratio: 1.046270e-01	ci left: 1.844003e-03	ci right 2.048926e-03	k: 1400	n:720000
PTPN11   720000 perm   371 sec   (1942 perm/sec)   p_kst 1.944444e-03   p_cons 3.855694e-02   p_joint 1.090278e-03

Joint ci ratio: 1.407357e-01	ci left: 9.869196e-04	ci right 1.137633e-03	k: 774	n:730000
Cons ci ratio: 2.290737e-02	ci left: 3.812518e-02	ci right 3.900999e-02	k: 28153	n:730000
KS ci ratio: 1.038881e-01	ci left: 1.845426e-03	ci right 2.048970e-03	k: 1420	n:730000
PTPN11   730000 perm   379 sec   (1926 perm/sec)   p_kst 1.945205e-03   p_cons 3.856575e-02   p_joint 1.060274e-03

Joint ci ratio: 1.396585e-01	ci left: 9.892304e-04	ci right 1.139044e-03	k: 786	n:740000
Cons ci ratio: 2.274323e-02	ci left: 3.815684e-02	ci right 3.903596e-02	k: 28560	n:740000
KS ci ratio: 1.031287e-01	ci left: 1.848132e-03	ci right 2.050394e-03	k: 1441	n:740000
PTPN11   740000 perm   387 sec   (1911 perm/sec)   p_kst 1.947297e-03   p_cons 3.859459e-02   p_joint 1.062162e-03

Joint ci ratio: 1.393055e-01	ci left: 9.811876e-04	ci right 1.129376e-03	k: 790	n:750000
Cons ci ratio: 2.260448e-02	ci left: 3.811607e-02	ci right 3.898883e-02	k: 28913	n:750000
KS ci ratio: 1.026321e-01	ci left: 1.841676e-03	ci right 2.042202e-03	k: 1455	n:750000
PTPN11   750000 perm   396 sec   (1896 perm/sec)   p_kst 1.940000e-03   p_cons 3.855067e-02   p_joint 1.053333e-03

Joint ci ratio: 1.381745e-01	ci left: 9.847889e-04	ci right 1.132214e-03	k: 803	n:760000
Cons ci ratio: 2.245150e-02	ci left: 3.813136e-02	ci right 3.899848e-02	k: 29308	n:760000
KS ci ratio: 1.020036e-01	ci left: 1.840521e-03	ci right 2.039621e-03	k: 1473	n:760000
PTPN11   760000 perm   404 sec   (1881 perm/sec)   p_kst 1.938158e-03   p_cons 3.856316e-02   p_joint 1.056579e-03

Joint ci ratio: 1.373232e-01	ci left: 9.845388e-04	ci right 1.130945e-03	k: 813	n:770000
Cons ci ratio: 2.231018e-02	ci left: 3.811785e-02	ci right 3.897913e-02	k: 29681	n:770000
KS ci ratio: 1.016600e-01	ci left: 1.829274e-03	ci right 2.026451e-03	k: 1483	n:770000
PTPN11   770000 perm   413 sec   (1867 perm/sec)   p_kst 1.925974e-03   p_cons 3.854675e-02   p_joint 1.055844e-03

Joint ci ratio: 1.367368e-01	ci left: 9.805831e-04	ci right 1.125727e-03	k: 820	n:780000
Cons ci ratio: 2.215692e-02	ci left: 3.815316e-02	ci right 3.900925e-02	k: 30092	n:780000
KS ci ratio: 1.010154e-01	ci left: 1.829564e-03	ci right 2.025447e-03	k: 1502	n:780000
PTPN11   780000 perm   421 sec   (1852 perm/sec)   p_kst 1.925641e-03   p_cons 3.857949e-02   p_joint 1.051282e-03

Joint ci ratio: 1.361579e-01	ci left: 9.767288e-04	ci right 1.120641e-03	k: 827	n:790000
Cons ci ratio: 2.201429e-02	ci left: 3.816241e-02	ci right 3.901313e-02	k: 30483	n:790000
KS ci ratio: 1.003499e-01	ci left: 1.831084e-03	ci right 2.025762e-03	k: 1522	n:790000
PTPN11   790000 perm   430 sec   (1838 perm/sec)   p_kst 1.926582e-03   p_cons 3.858608e-02   p_joint 1.046835e-03

Joint ci ratio: 1.347808e-01	ci left: 9.850498e-04	ci right 1.128602e-03	k: 844	n:800000
Cons ci ratio: 2.187070e-02	ci left: 3.818389e-02	ci right 3.902946e-02	k: 30884	n:800000
KS ci ratio: 9.931117e-02	ci left: 1.847197e-03	ci right 2.041438e-03	k: 1554	n:800000
PTPN11   800000 perm   439 sec   (1824 perm/sec)   p_kst 1.942500e-03   p_cons 3.860500e-02   p_joint 1.055000e-03

Joint ci ratio: 1.343052e-01	ci left: 9.800466e-04	ci right 1.122326e-03	k: 850	n:810000
Cons ci ratio: 2.172807e-02	ci left: 3.821099e-02	ci right 3.905157e-02	k: 31290	n:810000
KS ci ratio: 9.889902e-02	ci left: 1.840043e-03	ci right 2.032682e-03	k: 1567	n:810000
PTPN11   810000 perm   448 sec   (1810 perm/sec)   p_kst 1.934568e-03   p_cons 3.862963e-02   p_joint 1.049383e-03

Joint ci ratio: 1.327535e-01	ci left: 9.916707e-04	ci right 1.133843e-03	k: 870	n:820000
Cons ci ratio: 2.160025e-02	ci left: 3.819620e-02	ci right 3.903145e-02	k: 31662	n:820000
KS ci ratio: 9.830524e-02	ci left: 1.840203e-03	ci right 2.031635e-03	k: 1586	n:820000
PTPN11   820000 perm   457 sec   (1796 perm/sec)   p_kst 1.934146e-03   p_cons 3.861220e-02   p_joint 1.060976e-03

Joint ci ratio: 1.320730e-01	ci left: 9.902070e-04	ci right 1.131385e-03	k: 879	n:830000
Cons ci ratio: 2.148862e-02	ci left: 3.813384e-02	ci right 3.896336e-02	k: 31994	n:830000
KS ci ratio: 9.787480e-02	ci left: 1.834486e-03	ci right 2.024439e-03	k: 1600	n:830000
PTPN11   830000 perm   466 sec   (1783 perm/sec)   p_kst 1.927711e-03   p_cons 3.854699e-02   p_joint 1.059036e-03

Joint ci ratio: 1.321490e-01	ci left: 9.772672e-04	ci right 1.116686e-03	k: 878	n:840000
Cons ci ratio: 2.136839e-02	ci left: 3.810850e-02	ci right 3.893278e-02	k: 32356	n:840000
KS ci ratio: 9.708922e-02	ci left: 1.842845e-03	ci right 2.032045e-03	k: 1626	n:840000
PTPN11   840000 perm   475 sec   (1770 perm/sec)   p_kst 1.935714e-03   p_cons 3.851905e-02   p_joint 1.045238e-03

Joint ci ratio: 1.316262e-01	ci left: 9.737334e-04	ci right 1.112056e-03	k: 885	n:850000
Cons ci ratio: 2.123632e-02	ci left: 3.813176e-02	ci right 3.895139e-02	k: 32759	n:850000
KS ci ratio: 9.643925e-02	ci left: 1.846420e-03	ci right 2.034647e-03	k: 1648	n:850000
PTPN11   850000 perm   484 sec   (1756 perm/sec)   p_kst 1.938824e-03   p_cons 3.854000e-02   p_joint 1.041176e-03

Joint ci ratio: 1.412037e-01	ci left: 8.321205e-04	ci right 9.596519e-04	k: 769	n:860000
Cons ci ratio: 2.110501e-02	ci left: 3.816028e-02	ci right 3.897539e-02	k: 33167	n:860000
KS ci ratio: 9.588843e-02	ci left: 1.846512e-03	ci right 2.033612e-03	k: 1667	n:860000
PTPN11   860000 perm   493 sec   (1744 perm/sec)   p_kst 1.938372e-03   p_cons 3.856628e-02   p_joint 8.941860e-04

Joint ci ratio: 1.410212e-01	ci left: 8.247733e-04	ci right 9.510016e-04	k: 771	n:870000
Cons ci ratio: 2.098521e-02	ci left: 3.815614e-02	ci right 3.896648e-02	k: 33547	n:870000
KS ci ratio: 9.531865e-02	ci left: 1.847727e-03	ci right 2.033776e-03	k: 1687	n:870000
PTPN11   870000 perm   503 sec   (1731 perm/sec)   p_kst 1.939080e-03   p_cons 3.855977e-02   p_joint 8.862069e-04

Joint ci ratio: 1.478918e-01	ci left: 7.387264e-04	ci right 8.577810e-04	k: 701	n:880000
Cons ci ratio: 2.087127e-02	ci left: 3.813854e-02	ci right 3.894405e-02	k: 33915	n:880000
KS ci ratio: 9.475890e-02	ci left: 1.848917e-03	ci right 2.033932e-03	k: 1707	n:880000
PTPN11   880000 perm   512 sec   (1718 perm/sec)   p_kst 1.939773e-03   p_cons 3.853977e-02   p_joint 7.965909e-04

Joint ci ratio: 1.488504e-01	ci left: 7.206886e-04	ci right 8.376561e-04	k: 692	n:890000
Cons ci ratio: 2.075224e-02	ci left: 3.814594e-02	ci right 3.894696e-02	k: 34305	n:890000
KS ci ratio: 9.440067e-02	ci left: 1.842403e-03	ci right 2.026031e-03	k: 1720	n:890000
PTPN11   890000 perm   522 sec   (1706 perm/sec)   p_kst 1.932584e-03   p_cons 3.854494e-02   p_joint 7.775281e-04

Joint ci ratio: 1.271814e-01	ci left: 9.873722e-04	ci right 1.122539e-03	k: 948	n:900000
Cons ci ratio: 2.063708e-02	ci left: 3.814655e-02	ci right 3.894309e-02	k: 34689	n:900000
KS ci ratio: 9.382985e-02	ci left: 1.844716e-03	ci right 2.027402e-03	k: 1741	n:900000
PTPN11   900000 perm   531 sec   (1693 perm/sec)   p_kst 1.934444e-03   p_cons 3.854333e-02   p_joint 1.053333e-03

Joint ci ratio: 1.273165e-01	ci left: 9.743937e-04	ci right 1.107936e-03	k: 946	n:910000
Cons ci ratio: 2.052443e-02	ci left: 3.814498e-02	ci right 3.893708e-02	k: 35071	n:910000
KS ci ratio: 9.324278e-02	ci left: 1.848055e-03	ci right 2.029864e-03	k: 1763	n:910000
PTPN11   910000 perm   541 sec   (1681 perm/sec)   p_kst 1.937363e-03   p_cons 3.853956e-02   p_joint 1.039560e-03

Joint ci ratio: 1.276550e-01	ci left: 9.585405e-04	ci right 1.090286e-03	k: 941	n:920000
Cons ci ratio: 2.041000e-02	ci left: 3.815643e-02	ci right 3.894430e-02	k: 35465	n:920000
KS ci ratio: 9.282293e-02	ci left: 1.844954e-03	ci right 2.025596e-03	k: 1779	n:920000
PTPN11   920000 perm   551 sec   (1669 perm/sec)   p_kst 1.933696e-03   p_cons 3.854891e-02   p_joint 1.022826e-03

Joint ci ratio: 1.271836e-01	ci left: 9.555205e-04	ci right 1.086329e-03	k: 948	n:930000
Cons ci ratio: 2.029600e-02	ci left: 3.817300e-02	ci right 3.895676e-02	k: 35864	n:930000
KS ci ratio: 9.253786e-02	ci left: 1.836670e-03	ci right 2.015918e-03	k: 1790	n:930000
PTPN11   930000 perm   561 sec   (1658 perm/sec)   p_kst 1.924731e-03   p_cons 3.856344e-02   p_joint 1.019355e-03

Joint ci ratio: 1.279969e-01	ci left: 9.329962e-04	ci right 1.061600e-03	k: 936	n:940000
Cons ci ratio: 2.019026e-02	ci left: 3.816594e-02	ci right 3.894542e-02	k: 36241	n:940000
KS ci ratio: 9.192377e-02	ci left: 1.842074e-03	ci right 2.020592e-03	k: 1814	n:940000
PTPN11   940000 perm   571 sec   (1646 perm/sec)   p_kst 1.929787e-03   p_cons 3.855426e-02   p_joint 9.957447e-04

Joint ci ratio: 1.275217e-01	ci left: 9.303080e-04	ci right 1.058029e-03	k: 943	n:950000
Cons ci ratio: 2.007874e-02	ci left: 3.818627e-02	ci right 3.896181e-02	k: 36644	n:950000
KS ci ratio: 9.154647e-02	ci left: 1.838111e-03	ci right 2.015475e-03	k: 1829	n:950000
PTPN11   950000 perm   581 sec   (1635 perm/sec)   p_kst 1.925263e-03   p_cons 3.857263e-02   p_joint 9.926316e-04

Joint ci ratio: 1.270517e-01	ci left: 9.276767e-04	ci right 1.054532e-03	k: 950	n:960000
Cons ci ratio: 1.998308e-02	ci left: 3.815436e-02	ci right 3.892552e-02	k: 36997	n:960000
KS ci ratio: 9.102560e-02	ci left: 1.840339e-03	ci right 2.016854e-03	k: 1850	n:960000
PTPN11   960000 perm   591 sec   (1623 perm/sec)   p_kst 1.927083e-03   p_cons 3.853854e-02   p_joint 9.895833e-04

Joint ci ratio: 1.262574e-01	ci left: 9.300923e-04	ci right 1.056423e-03	k: 962	n:970000
Cons ci ratio: 1.988434e-02	ci left: 3.813953e-02	ci right 3.890653e-02	k: 37366	n:970000
KS ci ratio: 9.051352e-02	ci left: 1.842525e-03	ci right 2.018203e-03	k: 1871	n:970000
PTPN11   970000 perm   602 sec   (1612 perm/sec)   p_kst 1.928866e-03   p_cons 3.852165e-02   p_joint 9.917526e-04

Joint ci ratio: 1.254779e-01	ci left: 9.324610e-04	ci right 1.058273e-03	k: 974	n:980000
Cons ci ratio: 1.977398e-02	ci left: 3.817375e-02	ci right 3.893714e-02	k: 37783	n:980000
KS ci ratio: 9.000998e-02	ci left: 1.844669e-03	ci right 2.019521e-03	k: 1892	n:980000
PTPN11   980000 perm   612 sec   (1601 perm/sec)   p_kst 1.930612e-03   p_cons 3.855408e-02   p_joint 9.938776e-04

Joint ci ratio: 1.250301e-01	ci left: 9.298913e-04	ci right 1.054876e-03	k: 981	n:990000
Cons ci ratio: 1.967588e-02	ci left: 3.816809e-02	ci right 3.892754e-02	k: 38161	n:990000
KS ci ratio: 8.965567e-02	ci left: 1.840846e-03	ci right 2.014614e-03	k: 1907	n:990000
PTPN11   990000 perm   623 sec   (1590 perm/sec)   p_kst 1.926263e-03   p_cons 3.854646e-02   p_joint 9.909091e-04

Joint ci ratio: 1.242105e-01	ci left: 9.331872e-04	ci right 1.057732e-03	k: 994	n:1000000
Cons ci ratio: 1.958002e-02	ci left: 3.815957e-02	ci right 3.891511e-02	k: 38536	n:1000000
KS ci ratio: 8.930551e-02	ci left: 1.837102e-03	ci right 2.009803e-03	k: 1922	n:1000000
PTPN11   1000000 perm   633 sec   (1579 perm/sec)   p_kst 1.922000e-03   p_cons 3.853600e-02   p_joint 9.940000e-04

Joint ci ratio: 1.235909e-01	ci left: 9.335418e-04	ci right 1.057467e-03	k: 1004	n:1010000
Cons ci ratio: 1.947410e-02	ci left: 3.819459e-02	ci right 3.894668e-02	k: 38955	n:1010000
KS ci ratio: 8.886757e-02	ci left: 1.837306e-03	ci right 2.009135e-03	k: 1941	n:1010000
PTPN11   1010000 perm   644 sec   (1569 perm/sec)   p_kst 1.921782e-03   p_cons 3.856931e-02   p_joint 9.940594e-04

Joint ci ratio: 1.239004e-01	ci left: 9.196388e-04	ci right 1.042047e-03	k: 999	n:1020000
Cons ci ratio: 1.938038e-02	ci left: 3.818892e-02	ci right 3.893724e-02	k: 39333	n:1020000
KS ci ratio: 8.850387e-02	ci left: 1.834631e-03	ci right 2.005472e-03	k: 1957	n:1020000
PTPN11   1020000 perm   654 sec   (1559 perm/sec)   p_kst 1.918627e-03   p_cons 3.856176e-02   p_joint 9.794118e-04

Joint ci ratio: 1.241498e-01	ci left: 9.069469e-04	ci right 1.027926e-03	k: 995	n:1030000
Cons ci ratio: 1.928396e-02	ci left: 3.819883e-02	ci right 3.894358e-02	k: 39727	n:1030000
KS ci ratio: 8.809990e-02	ci left: 1.833909e-03	ci right 2.003863e-03	k: 1975	n:1030000
PTPN11   1030000 perm   665 sec   (1548 perm/sec)   p_kst 1.917476e-03   p_cons 3.856990e-02   p_joint 9.660194e-04

Joint ci ratio: 1.234698e-01	ci left: 9.084757e-04	ci right 1.028947e-03	k: 1006	n:1040000
Cons ci ratio: 1.918598e-02	ci left: 3.822004e-02	ci right 3.896138e-02	k: 40133	n:1040000
KS ci ratio: 8.767938e-02	ci left: 1.834143e-03	ci right 2.003266e-03	k: 1994	n:1040000
PTPN11   1040000 perm   676 sec   (1538 perm/sec)   p_kst 1.917308e-03   p_cons 3.858942e-02   p_joint 9.673077e-04

Joint ci ratio: 1.365060e-01	ci left: 7.311862e-04	ci right 8.392173e-04	k: 823	n:1050000
Cons ci ratio: 1.909364e-02	ci left: 3.822475e-02	ci right 3.896256e-02	k: 40522	n:1050000
KS ci ratio: 8.717813e-02	ci left: 1.838101e-03	ci right 2.006570e-03	k: 2017	n:1050000
PTPN11   1050000 perm   687 sec   (1528 perm/sec)   p_kst 1.920952e-03   p_cons 3.859238e-02   p_joint 7.838095e-04

Joint ci ratio: 1.357665e-01	ci left: 7.324896e-04	ci right 8.400797e-04	k: 832	n:1060000
Cons ci ratio: 1.900914e-02	ci left: 3.820401e-02	ci right 3.893813e-02	k: 40884	n:1060000
KS ci ratio: 8.677061e-02	ci left: 1.838295e-03	ci right 2.005955e-03	k: 2036	n:1060000
PTPN11   1060000 perm   698 sec   (1518 perm/sec)   p_kst 1.920755e-03   p_cons 3.856981e-02   p_joint 7.849057e-04

Joint ci ratio: 1.372592e-01	ci left: 7.093954e-04	ci right 8.148326e-04	k: 814	n:1070000
Cons ci ratio: 1.891837e-02	ci left: 3.821252e-02	ci right 3.894326e-02	k: 41277	n:1070000
KS ci ratio: 8.638981e-02	ci left: 1.837573e-03	ci right 2.004394e-03	k: 2054	n:1070000
PTPN11   1070000 perm   709 sec   (1508 perm/sec)   p_kst 1.919626e-03   p_cons 3.857664e-02   p_joint 7.607477e-04

Joint ci ratio: 1.362595e-01	ci left: 7.135580e-04	ci right 8.187788e-04	k: 826	n:1080000
Cons ci ratio: 1.882865e-02	ci left: 3.822179e-02	ci right 3.894920e-02	k: 41671	n:1080000
KS ci ratio: 8.599320e-02	ci left: 1.837772e-03	ci right 2.003806e-03	k: 2073	n:1080000
PTPN11   1080000 perm   721 sec   (1499 perm/sec)   p_kst 1.919444e-03   p_cons 3.858426e-02   p_joint 7.648148e-04

Joint ci ratio: 1.356865e-01	ci left: 7.132152e-04	ci right 8.179074e-04	k: 833	n:1090000
Cons ci ratio: 1.873973e-02	ci left: 3.823273e-02	ci right 3.895688e-02	k: 42067	n:1090000
KS ci ratio: 8.570462e-02	ci left: 1.833480e-03	ci right 1.998543e-03	k: 2087	n:1090000
PTPN11   1090000 perm   732 sec   (1489 perm/sec)   p_kst 1.914679e-03   p_cons 3.859358e-02   p_joint 7.642202e-04

Joint ci ratio: 1.349602e-01	ci left: 7.146363e-04	ci right 8.189305e-04	k: 842	n:1100000
Cons ci ratio: 1.865868e-02	ci left: 3.821723e-02	ci right 3.893793e-02	k: 42434	n:1100000
KS ci ratio: 8.533762e-02	ci left: 1.832825e-03	ci right 1.997088e-03	k: 2105	n:1100000
PTPN11   1100000 perm   743 sec   (1480 perm/sec)   p_kst 1.913636e-03   p_cons 3.857636e-02   p_joint 7.654545e-04

Joint ci ratio: 1.346413e-01	ci left: 7.116801e-04	ci right 8.152779e-04	k: 846	n:1110000
Cons ci ratio: 1.857800e-02	ci left: 3.820471e-02	ci right 3.892202e-02	k: 42804	n:1110000
KS ci ratio: 8.491524e-02	ci left: 1.834830e-03	ci right 1.998418e-03	k: 2126	n:1110000
PTPN11   1110000 perm   755 sec   (1470 perm/sec)   p_kst 1.915315e-03   p_cons 3.856216e-02   p_joint 7.621622e-04

Joint ci ratio: 1.341671e-01	ci left: 7.105028e-04	ci right 8.135358e-04	k: 852	n:1120000
Cons ci ratio: 1.850304e-02	ci left: 3.817376e-02	ci right 3.888756e-02	k: 43153	n:1120000
KS ci ratio: 8.473654e-02	ci left: 1.826312e-03	ci right 1.988781e-03	k: 2135	n:1120000
PTPN11   1120000 perm   766 sec   (1462 perm/sec)   p_kst 1.906250e-03   p_cons 3.852946e-02   p_joint 7.607143e-04

Joint ci ratio: 1.336200e-01	ci left: 7.102023e-04	ci right 8.127385e-04	k: 859	n:1130000
Cons ci ratio: 1.841908e-02	ci left: 3.818300e-02	ci right 3.889370e-02	k: 43547	n:1130000
KS ci ratio: 8.440142e-02	ci left: 1.824876e-03	ci right 1.986544e-03	k: 2152	n:1130000
PTPN11   1130000 perm   778 sec   (1453 perm/sec)   p_kst 1.904425e-03   p_cons 3.853717e-02   p_joint 7.601770e-04

Joint ci ratio: 1.329261e-01	ci left: 7.116041e-04	ci right 8.137670e-04	k: 868	n:1140000
Cons ci ratio: 1.834058e-02	ci left: 3.817462e-02	ci right 3.888211e-02	k: 43921	n:1140000
KS ci ratio: 8.399271e-02	ci left: 1.826902e-03	ci right 1.987927e-03	k: 2173	n:1140000
PTPN11   1140000 perm   789 sec   (1444 perm/sec)   p_kst 1.906140e-03   p_cons 3.852719e-02   p_joint 7.614035e-04

Joint ci ratio: 1.322430e-01	ci left: 7.129827e-04	ci right 8.147762e-04	k: 877	n:1150000
Cons ci ratio: 1.826223e-02	ci left: 3.816986e-02	ci right 3.887420e-02	k: 44299	n:1150000
KS ci ratio: 8.357082e-02	ci left: 1.829745e-03	ci right 1.990171e-03	k: 2195	n:1150000
PTPN11   1150000 perm   801 sec   (1436 perm/sec)   p_kst 1.908696e-03   p_cons 3.852087e-02   p_joint 7.626087e-04

Joint ci ratio: 1.315703e-01	ci left: 7.143390e-04	ci right 8.157667e-04	k: 886	n:1160000
Cons ci ratio: 1.818043e-02	ci left: 3.818321e-02	ci right 3.888461e-02	k: 44698	n:1160000
KS ci ratio: 8.326814e-02	ci left: 1.827477e-03	ci right 1.987095e-03	k: 2211	n:1160000
PTPN11   1160000 perm   813 sec   (1427 perm/sec)   p_kst 1.906034e-03   p_cons 3.853276e-02   p_joint 7.637931e-04

Joint ci ratio: 1.312012e-01	ci left: 7.123665e-04	ci right 8.132083e-04	k: 891	n:1170000
Cons ci ratio: 1.810493e-02	ci left: 3.817507e-02	ci right 3.887338e-02	k: 45072	n:1170000
KS ci ratio: 8.306215e-02	ci left: 1.821063e-03	ci right 1.979709e-03	k: 2222	n:1170000
PTPN11   1170000 perm   825 sec   (1419 perm/sec)   p_kst 1.899145e-03   p_cons 3.852308e-02   p_joint 7.615385e-04

Joint ci ratio: 1.304718e-01	ci left: 7.145267e-04	ci right 8.150685e-04	k: 901	n:1180000
Cons ci ratio: 1.803739e-02	ci left: 3.813838e-02	ci right 3.883338e-02	k: 45412	n:1180000
KS ci ratio: 8.269097e-02	ci left: 1.822229e-03	ci right 1.980232e-03	k: 2242	n:1180000
PTPN11   1180000 perm   837 sec   (1411 perm/sec)   p_kst 1.900000e-03   p_cons 3.848475e-02   p_joint 7.635593e-04

Joint ci ratio: 1.323202e-01	ci left: 6.882038e-04	ci right 7.865214e-04	k: 876	n:1190000
Cons ci ratio: 1.796162e-02	ci left: 3.813912e-02	ci right 3.883119e-02	k: 45796	n:1190000
KS ci ratio: 8.236119e-02	ci left: 1.821730e-03	ci right 1.979030e-03	k: 2260	n:1190000
PTPN11   1190000 perm   849 sec   (1402 perm/sec)   p_kst 1.899160e-03   p_cons 3.848403e-02   p_joint 7.361345e-04

Joint ci ratio: 1.317952e-01	ci left: 6.881094e-04	ci right 7.859930e-04	k: 883	n:1200000
Cons ci ratio: 1.788498e-02	ci left: 3.814733e-02	ci right 3.883657e-02	k: 46189	n:1200000
KS ci ratio: 8.207142e-02	ci left: 1.819608e-03	ci right 1.976145e-03	k: 2276	n:1200000
PTPN11   1200000 perm   861 sec   (1394 perm/sec)   p_kst 1.896667e-03   p_cons 3.849083e-02   p_joint 7.358333e-04

Joint ci ratio: 1.320951e-01	ci left: 6.792257e-04	ci right 7.760826e-04	k: 879	n:1210000
Cons ci ratio: 1.781389e-02	ci left: 3.813648e-02	ci right 3.882276e-02	k: 46559	n:1210000
KS ci ratio: 8.167769e-02	ci left: 1.822379e-03	ci right 1.978368e-03	k: 2298	n:1210000
PTPN11   1210000 perm   873 sec   (1386 perm/sec)   p_kst 1.899174e-03   p_cons 3.847851e-02   p_joint 7.264463e-04

Joint ci ratio: 1.327767e-01	ci left: 6.665253e-04	ci right 7.621003e-04	k: 870	n:1220000
Cons ci ratio: 1.773558e-02	ci left: 3.815928e-02	ci right 3.884291e-02	k: 46970	n:1220000
KS ci ratio: 8.135984e-02	ci left: 1.821895e-03	ci right 1.977206e-03	k: 2316	n:1220000
PTPN11   1220000 perm   885 sec   (1378 perm/sec)   p_kst 1.898361e-03   p_cons 3.850000e-02   p_joint 7.131148e-04

Joint ci ratio: 1.323217e-01	ci left: 6.658227e-04	ci right 7.609440e-04	k: 876	n:1230000
Cons ci ratio: 1.766703e-02	ci left: 3.814528e-02	ci right 3.882600e-02	k: 47336	n:1230000
KS ci ratio: 8.090693e-02	ci left: 1.827792e-03	ci right 1.982698e-03	k: 2342	n:1230000
PTPN11   1230000 perm   898 sec   (1370 perm/sec)   p_kst 1.904065e-03   p_cons 3.848455e-02   p_joint 7.121951e-04

Joint ci ratio: 1.318715e-01	ci left: 6.651319e-04	ci right 7.598059e-04	k: 882	n:1240000
Cons ci ratio: 1.759734e-02	ci left: 3.813955e-02	ci right 3.881745e-02	k: 47712	n:1240000
KS ci ratio: 8.061507e-02	ci left: 1.826485e-03	ci right 1.980695e-03	k: 2359	n:1240000
PTPN11   1240000 perm   910 sec   (1362 perm/sec)   p_kst 1.902419e-03   p_cons 3.847742e-02   p_joint 7.112903e-04

Joint ci ratio: 1.314998e-01	ci left: 6.636791e-04	ci right 7.578592e-04	k: 887	n:1250000
Cons ci ratio: 1.752999e-02	ci left: 3.812754e-02	ci right 3.880261e-02	k: 48080	n:1250000
KS ci ratio: 8.024183e-02	ci left: 1.829119e-03	ci right 1.982803e-03	k: 2381	n:1250000
PTPN11   1250000 perm   923 sec   (1354 perm/sec)   p_kst 1.904800e-03   p_cons 3.846400e-02   p_joint 7.096000e-04

Joint ci ratio: 1.311313e-01	ci left: 6.622497e-04	ci right 7.559431e-04	k: 892	n:1260000
Cons ci ratio: 1.745685e-02	ci left: 3.814338e-02	ci right 3.881589e-02	k: 48483	n:1260000
KS ci ratio: 8.005745e-02	ci left: 1.823157e-03	ci right 1.975972e-03	k: 2392	n:1260000
PTPN11   1260000 perm   936 sec   (1347 perm/sec)   p_kst 1.898413e-03   p_cons 3.847857e-02   p_joint 7.079365e-04

Joint ci ratio: 1.301868e-01	ci left: 6.669368e-04	ci right 7.605612e-04	k: 905	n:1270000
Cons ci ratio: 1.738314e-02	ci left: 3.816526e-02	ci right 3.883528e-02	k: 48894	n:1270000
KS ci ratio: 7.970841e-02	ci left: 1.825007e-03	ci right 1.977279e-03	k: 2413	n:1270000
PTPN11   1270000 perm   948 sec   (1339 perm/sec)   p_kst 1.900000e-03   p_cons 3.849921e-02   p_joint 7.125984e-04

Joint ci ratio: 1.300436e-01	ci left: 6.632380e-04	ci right 7.562328e-04	k: 907	n:1280000
Cons ci ratio: 1.731529e-02	ci left: 3.816579e-02	ci right 3.883318e-02	k: 49278	n:1280000
KS ci ratio: 7.954410e-02	ci left: 1.818406e-03	ci right 1.969800e-03	k: 2423	n:1280000
PTPN11   1280000 perm   961 sec   (1332 perm/sec)   p_kst 1.892969e-03   p_cons 3.849844e-02   p_joint 7.085938e-04

Joint ci ratio: 1.295452e-01	ci left: 6.633467e-04	ci right 7.559730e-04	k: 914	n:1290000
Cons ci ratio: 1.725383e-02	ci left: 3.814239e-02	ci right 3.880698e-02	k: 49631	n:1290000
KS ci ratio: 7.923418e-02	ci left: 1.818746e-03	ci right 1.969551e-03	k: 2442	n:1290000
PTPN11   1290000 perm   974 sec   (1324 perm/sec)   p_kst 1.893023e-03   p_cons 3.847364e-02   p_joint 7.085271e-04

Joint ci ratio: 1.290525e-01	ci left: 6.634545e-04	ci right 7.557165e-04	k: 921	n:1300000
Cons ci ratio: 1.718765e-02	ci left: 3.814233e-02	ci right 3.880434e-02	k: 50014	n:1300000
KS ci ratio: 7.887971e-02	ci left: 1.821344e-03	ci right 1.971658e-03	k: 2464	n:1300000
PTPN11   1300000 perm   987 sec   (1317 perm/sec)   p_kst 1.895385e-03   p_cons 3.847231e-02   p_joint 7.084615e-04

Joint ci ratio: 1.284962e-01	ci left: 6.643001e-04	ci right 7.562511e-04	k: 929	n:1310000
Cons ci ratio: 1.712188e-02	ci left: 3.814380e-02	ci right 3.880328e-02	k: 50399	n:1310000
KS ci ratio: 7.862504e-02	ci left: 1.819414e-03	ci right 1.969062e-03	k: 2480	n:1310000
PTPN11   1310000 perm   1000 sec   (1310 perm/sec)   p_kst 1.893130e-03   p_cons 3.847252e-02   p_joint 7.091603e-04

Joint ci ratio: 1.277427e-01	ci left: 6.673339e-04	ci right 7.591221e-04	k: 940	n:1320000
Cons ci ratio: 1.705615e-02	ci left: 3.814827e-02	ci right 3.880527e-02	k: 50788	n:1320000
KS ci ratio: 7.821606e-02	ci left: 1.824941e-03	ci right 1.974227e-03	k: 2506	n:1320000
PTPN11   1320000 perm   1013 sec   (1303 perm/sec)   p_kst 1.898485e-03   p_cons 3.847576e-02   p_joint 7.121212e-04

Joint ci ratio: 1.291938e-01	ci left: 6.470338e-04	ci right 7.371184e-04	k: 919	n:1330000
Cons ci ratio: 1.699152e-02	ci left: 3.815118e-02	ci right 3.880572e-02	k: 51175	n:1330000
KS ci ratio: 7.785960e-02	ci left: 1.828176e-03	ci right 1.977014e-03	k: 2529	n:1330000
PTPN11   1330000 perm   1027 sec   (1296 perm/sec)   p_kst 1.901504e-03   p_cons 3.847744e-02   p_joint 6.909774e-04

Joint ci ratio: 1.286357e-01	ci left: 6.479829e-04	ci right 7.377800e-04	k: 927	n:1340000
Cons ci ratio: 1.692984e-02	ci left: 3.814439e-02	ci right 3.879641e-02	k: 51549	n:1340000
KS ci ratio: 7.759939e-02	ci left: 1.826973e-03	ci right 1.975193e-03	k: 2546	n:1340000
PTPN11   1340000 perm   1040 sec   (1289 perm/sec)   p_kst 1.900000e-03   p_cons 3.846940e-02   p_joint 6.917910e-04

Joint ci ratio: 1.280847e-01	ci left: 6.489187e-04	ci right 7.384311e-04	k: 935	n:1350000
Cons ci ratio: 1.686765e-02	ci left: 3.814287e-02	ci right 3.879245e-02	k: 51930	n:1350000
KS ci ratio: 7.728139e-02	ci left: 1.828694e-03	ci right 1.976419e-03	k: 2567	n:1350000
PTPN11   1350000 perm   1053 sec   (1282 perm/sec)   p_kst 1.901481e-03   p_cons 3.846667e-02   p_joint 6.925926e-04

Joint ci ratio: 1.282222e-01	ci left: 6.427236e-04	ci right 7.314839e-04	k: 933	n:1360000
Cons ci ratio: 1.681098e-02	ci left: 3.812014e-02	ci right 3.876713e-02	k: 52282	n:1360000
KS ci ratio: 7.698217e-02	ci left: 1.829670e-03	ci right 1.976876e-03	k: 2587	n:1360000
PTPN11   1360000 perm   1067 sec   (1275 perm/sec)   p_kst 1.902206e-03   p_cons 3.844265e-02   p_joint 6.860294e-04

Joint ci ratio: 1.278124e-01	ci left: 6.422715e-04	ci right 7.306644e-04	k: 939	n:1370000
Cons ci ratio: 1.674975e-02	ci left: 3.812028e-02	ci right 3.876489e-02	k: 52665	n:1370000
KS ci ratio: 7.671588e-02	ci left: 1.829201e-03	ci right 1.975837e-03	k: 2605	n:1370000
PTPN11   1370000 perm   1081 sec   (1268 perm/sec)   p_kst 1.901460e-03   p_cons 3.844161e-02   p_joint 6.854015e-04

Joint ci ratio: 1.271378e-01	ci left: 6.446327e-04	ci right 7.328470e-04	k: 949	n:1380000
Cons ci ratio: 1.668935e-02	ci left: 3.811970e-02	ci right 3.876195e-02	k: 53047	n:1380000
KS ci ratio: 7.642315e-02	ci left: 1.830161e-03	ci right 1.976290e-03	k: 2625	n:1380000
PTPN11   1380000 perm   1094 sec   (1261 perm/sec)   p_kst 1.902174e-03   p_cons 3.843986e-02   p_joint 6.876812e-04

Joint ci ratio: 1.319513e-01	ci left: 5.926580e-04	ci right 6.770711e-04	k: 881	n:1390000
Cons ci ratio: 1.662491e-02	ci left: 3.813991e-02	ci right 3.878000e-02	k: 53458	n:1390000
KS ci ratio: 7.609055e-02	ci left: 1.833226e-03	ci right 1.978934e-03	k: 2648	n:1390000
PTPN11   1390000 perm   1108 sec   (1254 perm/sec)   p_kst 1.905036e-03   p_cons 3.845899e-02   p_joint 6.338129e-04

Joint ci ratio: 1.312094e-01	ci left: 5.953325e-04	ci right 6.796127e-04	k: 891	n:1400000
Cons ci ratio: 1.656792e-02	ci left: 3.812996e-02	ci right 3.876767e-02	k: 53827	n:1400000
KS ci ratio: 7.586187e-02	ci left: 1.831343e-03	ci right 1.976445e-03	k: 2664	n:1400000
PTPN11   1400000 perm   1122 sec   (1248 perm/sec)   p_kst 1.902857e-03   p_cons 3.844786e-02   p_joint 6.364286e-04

Joint ci ratio: 1.309895e-01	ci left: 5.931681e-04	ci right 6.769902e-04	k: 894	n:1410000
Cons ci ratio: 1.651041e-02	ci left: 3.812510e-02	ci right 3.876049e-02	k: 54203	n:1410000
KS ci ratio: 7.572018e-02	ci left: 1.825312e-03	ci right 1.969654e-03	k: 2674	n:1410000
PTPN11   1410000 perm   1136 sec   (1242 perm/sec)   p_kst 1.896454e-03   p_cons 3.844184e-02   p_joint 6.340426e-04

Joint ci ratio: 1.099053e-01	ci left: 8.458685e-04	ci right 9.449177e-04	k: 1270	n:1420000
Cons ci ratio: 1.645099e-02	ci left: 3.813153e-02	ci right 3.876472e-02	k: 54595	n:1420000
KS ci ratio: 7.546673e-02	ci left: 1.824894e-03	ci right 1.968699e-03	k: 2692	n:1420000
PTPN11   1420000 perm   1150 sec   (1235 perm/sec)   p_kst 1.895775e-03   p_cons 3.844718e-02   p_joint 8.943662e-04

Joint ci ratio: 1.109592e-01	ci left: 8.236332e-04	ci right 9.210639e-04	k: 1246	n:1430000
Cons ci ratio: 1.639297e-02	ci left: 3.813439e-02	ci right 3.876538e-02	k: 54982	n:1430000
KS ci ratio: 7.516027e-02	ci left: 1.827228e-03	ci right 1.970606e-03	k: 2714	n:1430000
PTPN11   1430000 perm   1164 sec   (1229 perm/sec)   p_kst 1.897902e-03   p_cons 3.844895e-02   p_joint 8.713287e-04

Joint ci ratio: 1.106491e-01	ci left: 8.226399e-04	ci right 9.196635e-04	k: 1253	n:1440000
Cons ci ratio: 1.633818e-02	ci left: 3.812546e-02	ci right 3.875417e-02	k: 55352	n:1440000
KS ci ratio: 7.492611e-02	ci left: 1.826123e-03	ci right 1.968948e-03	k: 2731	n:1440000
PTPN11   1440000 perm   1178 sec   (1222 perm/sec)   p_kst 1.896528e-03   p_cons 3.843889e-02   p_joint 8.701389e-04

Joint ci ratio: 1.102105e-01	ci left: 8.236726e-04	ci right 9.204079e-04	k: 1263	n:1450000
Cons ci ratio: 1.628363e-02	ci left: 3.811803e-02	ci right 3.874450e-02	k: 55724	n:1450000
KS ci ratio: 7.463974e-02	ci left: 1.827741e-03	ci right 1.970123e-03	k: 2752	n:1450000
PTPN11   1450000 perm   1193 sec   (1216 perm/sec)   p_kst 1.897931e-03   p_cons 3.843034e-02   p_joint 8.710345e-04

Joint ci ratio: 1.099500e-01	ci left: 8.220274e-04	ci right 9.183265e-04	k: 1269	n:1460000
Cons ci ratio: 1.622901e-02	ci left: 3.811344e-02	ci right 3.873771e-02	k: 56100	n:1460000
KS ci ratio: 7.446429e-02	ci left: 1.823960e-03	ci right 1.965699e-03	k: 2765	n:1460000
PTPN11   1460000 perm   1207 sec   (1210 perm/sec)   p_kst 1.893836e-03   p_cons 3.842466e-02   p_joint 8.691781e-04

Joint ci ratio: 1.181482e-01	ci left: 7.040812e-04	ci right 7.931429e-04	k: 1099	n:1470000
Cons ci ratio: 1.617554e-02	ci left: 3.810620e-02	ci right 3.872828e-02	k: 56472	n:1470000
KS ci ratio: 7.422320e-02	ci left: 1.823569e-03	ci right 1.964799e-03	k: 2783	n:1470000
PTPN11   1470000 perm   1221 sec   (1204 perm/sec)   p_kst 1.893197e-03   p_cons 3.841633e-02   p_joint 7.476190e-04

Joint ci ratio: 1.175088e-01	ci left: 7.071931e-04	ci right 7.961307e-04	k: 1111	n:1480000
Cons ci ratio: 1.612142e-02	ci left: 3.810444e-02	ci right 3.872439e-02	k: 56852	n:1480000
KS ci ratio: 7.401090e-02	ci left: 1.821858e-03	ci right 1.962535e-03	k: 2799	n:1480000
PTPN11   1480000 perm   1236 sec   (1198 perm/sec)   p_kst 1.891216e-03   p_cons 3.841351e-02   p_joint 7.506757e-04

Joint ci ratio: 1.170361e-01	ci left: 7.083100e-04	ci right 7.970049e-04	k: 1120	n:1490000
Cons ci ratio: 1.606842e-02	ci left: 3.810004e-02	ci right 3.871786e-02	k: 57228	n:1490000
KS ci ratio: 7.374796e-02	ci left: 1.822806e-03	ci right 1.963034e-03	k: 2819	n:1490000
PTPN11   1490000 perm   1251 sec   (1191 perm/sec)   p_kst 1.891946e-03   p_cons 3.840805e-02   p_joint 7.516779e-04

Joint ci ratio: 1.165690e-01	ci left: 7.094126e-04	ci right 7.978667e-04	k: 1129	n:1500000
Cons ci ratio: 1.601406e-02	ci left: 3.810433e-02	ci right 3.872012e-02	k: 57617	n:1500000
KS ci ratio: 7.347484e-02	ci left: 1.824396e-03	ci right 1.964205e-03	k: 2840	n:1500000
PTPN11   1500000 perm   1265 sec   (1186 perm/sec)   p_kst 1.893333e-03   p_cons 3.841133e-02   p_joint 7.526667e-04

Joint ci ratio: 1.164147e-01	ci left: 7.066433e-04	ci right 7.946275e-04	k: 1132	n:1510000
Cons ci ratio: 1.596225e-02	ci left: 3.809934e-02	ci right 3.871303e-02	k: 57992	n:1510000
KS ci ratio: 7.321755e-02	ci left: 1.825316e-03	ci right 1.964685e-03	k: 2860	n:1510000
PTPN11   1510000 perm   1280 sec   (1180 perm/sec)   p_kst 1.894040e-03   p_cons 3.840530e-02   p_joint 7.496689e-04

Joint ci ratio: 1.161078e-01	ci left: 7.058269e-04	ci right 7.934618e-04	k: 1138	n:1520000
Cons ci ratio: 1.590527e-02	ci left: 3.812063e-02	ci right 3.873245e-02	k: 58407	n:1520000
KS ci ratio: 7.300103e-02	ci left: 1.824287e-03	ci right 1.963148e-03	k: 2877	n:1520000
PTPN11   1520000 perm   1295 sec   (1174 perm/sec)   p_kst 1.892763e-03   p_cons 3.842566e-02   p_joint 7.486842e-04

Joint ci ratio: 1.159046e-01	ci left: 7.037521e-04	ci right 7.909660e-04	k: 1142	n:1530000
Cons ci ratio: 1.585577e-02	ci left: 3.810974e-02	ci right 3.871946e-02	k: 58773	n:1530000
KS ci ratio: 7.284948e-02	ci left: 1.820064e-03	ci right 1.958303e-03	k: 2889	n:1530000
PTPN11   1530000 perm   1310 sec   (1168 perm/sec)   p_kst 1.888235e-03   p_cons 3.841373e-02   p_joint 7.464052e-04

Joint ci ratio: 1.155513e-01	ci left: 7.035962e-04	ci right 7.905069e-04	k: 1149	n:1540000
Cons ci ratio: 1.580603e-02	ci left: 3.810222e-02	ci right 3.870990e-02	k: 59144	n:1540000
KS ci ratio: 7.256122e-02	ci left: 1.822909e-03	ci right 1.960793e-03	k: 2912	n:1540000
PTPN11   1540000 perm   1325 sec   (1163 perm/sec)   p_kst 1.890909e-03   p_cons 3.840519e-02   p_joint 7.461039e-04

Joint ci ratio: 1.152511e-01	ci left: 7.028161e-04	ci right 7.893895e-04	k: 1155	n:1550000
Cons ci ratio: 1.575181e-02	ci left: 3.811795e-02	ci right 3.872378e-02	k: 59551	n:1550000
KS ci ratio: 7.232573e-02	ci left: 1.823184e-03	ci right 1.960623e-03	k: 2931	n:1550000
PTPN11   1550000 perm   1340 sec   (1157 perm/sec)   p_kst 1.890968e-03   p_cons 3.842000e-02   p_joint 7.451613e-04

Joint ci ratio: 1.150027e-01	ci left: 7.014237e-04	ci right 7.876267e-04	k: 1160	n:1560000
Cons ci ratio: 1.570045e-02	ci left: 3.812262e-02	ci right 3.872653e-02	k: 59941	n:1560000
KS ci ratio: 7.212926e-02	ci left: 1.821568e-03	ci right 1.958497e-03	k: 2947	n:1560000
PTPN11   1560000 perm   1355 sec   (1151 perm/sec)   p_kst 1.889103e-03   p_cons 3.842372e-02   p_joint 7.435897e-04

Joint ci ratio: 1.148546e-01	ci left: 6.988118e-04	ci right 7.845758e-04	k: 1163	n:1570000
Cons ci ratio: 1.565107e-02	ci left: 3.812026e-02	ci right 3.872221e-02	k: 60320	n:1570000
KS ci ratio: 7.187367e-02	ci left: 1.823101e-03	ci right 1.959639e-03	k: 2968	n:1570000
PTPN11   1570000 perm   1370 sec   (1146 perm/sec)   p_kst 1.890446e-03   p_cons 3.842038e-02   p_joint 7.407643e-04

Joint ci ratio: 1.146088e-01	ci left: 6.974627e-04	ci right 7.828655e-04	k: 1168	n:1580000
Cons ci ratio: 1.560805e-02	ci left: 3.809018e-02	ci right 3.868999e-02	k: 60655	n:1580000
KS ci ratio: 7.165680e-02	ci left: 1.822750e-03	ci right 1.958833e-03	k: 2986	n:1580000
PTPN11   1580000 perm   1386 sec   (1140 perm/sec)   p_kst 1.889873e-03   p_cons 3.838924e-02   p_joint 7.392405e-04

Joint ci ratio: 1.172484e-01	ci left: 6.613192e-04	ci right 7.442905e-04	k: 1116	n:1590000
Cons ci ratio: 1.555675e-02	ci left: 3.810122e-02	ci right 3.869921e-02	k: 61055	n:1590000
KS ci ratio: 7.141808e-02	ci left: 1.823640e-03	ci right 1.959317e-03	k: 3006	n:1590000
PTPN11   1590000 perm   1401 sec   (1135 perm/sec)   p_kst 1.890566e-03   p_cons 3.839937e-02   p_joint 7.018868e-04

Joint ci ratio: 1.169869e-01	ci left: 6.602194e-04	ci right 7.428552e-04	k: 1121	n:1600000
Cons ci ratio: 1.550780e-02	ci left: 3.810340e-02	ci right 3.869953e-02	k: 61441	n:1600000
KS ci ratio: 7.126433e-02	ci left: 1.820222e-03	ci right 1.955341e-03	k: 3019	n:1600000
PTPN11   1600000 perm   1416 sec   (1130 perm/sec)   p_kst 1.886875e-03   p_cons 3.840063e-02   p_joint 7.006250e-04

Joint ci ratio: 1.164689e-01	ci left: 6.621485e-04	ci right 7.446336e-04	k: 1131	n:1610000
Cons ci ratio: 1.545801e-02	ci left: 3.811174e-02	ci right 3.870607e-02	k: 61837	n:1610000
KS ci ratio: 7.100610e-02	ci left: 1.822338e-03	ci right 1.957104e-03	k: 3041	n:1610000
PTPN11   1610000 perm   1432 sec   (1124 perm/sec)   p_kst 1.888820e-03   p_cons 3.840807e-02   p_joint 7.024845e-04

Joint ci ratio: 1.160595e-01	ci left: 6.628559e-04	ci right 7.451189e-04	k: 1139	n:1620000
Cons ci ratio: 1.541152e-02	ci left: 3.810646e-02	ci right 3.869890e-02	k: 62211	n:1620000
KS ci ratio: 7.070443e-02	ci left: 1.826854e-03	ci right 1.961356e-03	k: 3067	n:1620000
PTPN11   1620000 perm   1448 sec   (1119 perm/sec)   p_kst 1.893210e-03   p_cons 3.840185e-02   p_joint 7.030864e-04

Joint ci ratio: 1.158059e-01	ci left: 6.617678e-04	ci right 7.437040e-04	k: 1144	n:1630000
Cons ci ratio: 1.536214e-02	ci left: 3.811713e-02	ci right 3.870782e-02	k: 62611	n:1630000
KS ci ratio: 7.052085e-02	ci left: 1.825289e-03	ci right 1.959313e-03	k: 3083	n:1630000
PTPN11   1630000 perm   1464 sec   (1114 perm/sec)   p_kst 1.891411e-03   p_cons 3.841166e-02   p_joint 7.018405e-04

Joint ci ratio: 1.157050e-01	ci left: 6.589168e-04	ci right 7.404241e-04	k: 1146	n:1640000
Cons ci ratio: 1.531638e-02	ci left: 3.811249e-02	ci right 3.870134e-02	k: 62986	n:1640000
KS ci ratio: 7.038419e-02	ci left: 1.821347e-03	ci right 1.954812e-03	k: 3095	n:1640000
PTPN11   1640000 perm   1480 sec   (1108 perm/sec)   p_kst 1.887195e-03   p_cons 3.840610e-02   p_joint 6.987805e-04

Joint ci ratio: 1.154036e-01	ci left: 6.584546e-04	ci right 7.396781e-04	k: 1152	n:1650000
Cons ci ratio: 1.526602e-02	ci left: 3.813206e-02	ci right 3.871926e-02	k: 63401	n:1650000
KS ci ratio: 7.022570e-02	ci left: 1.818644e-03	ci right 1.951598e-03	k: 3109	n:1650000
PTPN11   1650000 perm   1496 sec   (1103 perm/sec)   p_kst 1.884242e-03   p_cons 3.842485e-02   p_joint 6.981818e-04

Joint ci ratio: 1.151046e-01	ci left: 6.579982e-04	ci right 7.389409e-04	k: 1158	n:1660000
Cons ci ratio: 1.521740e-02	ci left: 3.814540e-02	ci right 3.873091e-02	k: 63806	n:1660000
KS ci ratio: 6.998975e-02	ci left: 1.820118e-03	ci right 1.952714e-03	k: 3130	n:1660000
PTPN11   1660000 perm   1512 sec   (1098 perm/sec)   p_kst 1.885542e-03   p_cons 3.843735e-02   p_joint 6.975904e-04

Joint ci ratio: 1.140753e-01	ci left: 6.662727e-04	ci right 7.474510e-04	k: 1179	n:1670000
Cons ci ratio: 1.517231e-02	ci left: 3.814366e-02	ci right 3.872740e-02	k: 64186	n:1670000
KS ci ratio: 6.978945e-02	ci left: 1.819809e-03	ci right 1.951988e-03	k: 3148	n:1670000
PTPN11   1670000 perm   1528 sec   (1093 perm/sec)   p_kst 1.885030e-03   p_cons 3.843473e-02   p_joint 7.059880e-04

Joint ci ratio: 1.145133e-01	ci left: 6.571026e-04	ci right 7.374919e-04	k: 1170	n:1680000
Cons ci ratio: 1.513103e-02	ci left: 3.812534e-02	ci right 3.870720e-02	k: 64538	n:1680000
KS ci ratio: 6.953588e-02	ci left: 1.822429e-03	ci right 1.954298e-03	k: 3171	n:1680000
PTPN11   1680000 perm   1544 sec   (1088 perm/sec)   p_kst 1.887500e-03   p_cons 3.841548e-02   p_joint 6.964286e-04

Joint ci ratio: 1.140757e-01	ci left: 6.583877e-04	ci right 7.386056e-04	k: 1179	n:1690000
Cons ci ratio: 1.508283e-02	ci left: 3.814262e-02	ci right 3.872287e-02	k: 64950	n:1690000
KS ci ratio: 6.927420e-02	ci left: 1.825600e-03	ci right 1.957181e-03	k: 3195	n:1690000
PTPN11   1690000 perm   1560 sec   (1083 perm/sec)   p_kst 1.890533e-03   p_cons 3.843195e-02   p_joint 6.976331e-04

Joint ci ratio: 1.136910e-01	ci left: 6.590867e-04	ci right 7.391007e-04	k: 1187	n:1700000
Cons ci ratio: 1.503725e-02	ci left: 3.814914e-02	ci right 3.872772e-02	k: 65344	n:1700000
KS ci ratio: 6.911228e-02	ci left: 1.823532e-03	ci right 1.954645e-03	k: 3210	n:1700000
PTPN11   1700000 perm   1577 sec   (1078 perm/sec)   p_kst 1.888235e-03   p_cons 3.843765e-02   p_joint 6.982353e-04

Joint ci ratio: 1.135478e-01	ci left: 6.569368e-04	ci right 7.365828e-04	k: 1190	n:1710000
Cons ci ratio: 1.499089e-02	ci left: 3.816142e-02	ci right 3.873839e-02	k: 65748	n:1710000
KS ci ratio: 6.888735e-02	ci left: 1.824937e-03	ci right 1.955707e-03	k: 3231	n:1710000
PTPN11   1710000 perm   1593 sec   (1073 perm/sec)   p_kst 1.889474e-03   p_cons 3.844912e-02   p_joint 6.959064e-04

Joint ci ratio: 1.132629e-01	ci left: 6.565069e-04	ci right 7.358876e-04	k: 1196	n:1720000
Cons ci ratio: 1.494989e-02	ci left: 3.814923e-02	ci right 3.872442e-02	k: 66110	n:1720000
KS ci ratio: 6.869633e-02	ci left: 1.824612e-03	ci right 1.954981e-03	k: 3249	n:1720000
PTPN11   1720000 perm   1610 sec   (1068 perm/sec)   p_kst 1.888953e-03   p_cons 3.843605e-02   p_joint 6.953488e-04

Joint ci ratio: 1.127926e-01	ci left: 6.583290e-04	ci right 7.375776e-04	k: 1206	n:1730000
Cons ci ratio: 1.490666e-02	ci left: 3.814985e-02	ci right 3.872337e-02	k: 66494	n:1730000
KS ci ratio: 6.843351e-02	ci left: 1.828268e-03	ci right 1.958379e-03	k: 3274	n:1730000
PTPN11   1730000 perm   1627 sec   (1063 perm/sec)   p_kst 1.892486e-03   p_cons 3.843584e-02   p_joint 6.971098e-04

Joint ci ratio: 1.123282e-01	ci left: 6.601308e-04	ci right 7.392474e-04	k: 1216	n:1740000
Cons ci ratio: 1.486323e-02	ci left: 3.815333e-02	ci right 3.872522e-02	k: 66883	n:1740000
KS ci ratio: 6.823586e-02	ci left: 1.828494e-03	ci right 1.958230e-03	k: 3293	n:1740000
PTPN11   1740000 perm   1644 sec   (1059 perm/sec)   p_kst 1.892529e-03   p_cons 3.843851e-02   p_joint 6.988506e-04

Joint ci ratio: 1.119608e-01	ci left: 6.608019e-04	ci right 7.397228e-04	k: 1224	n:1750000
Cons ci ratio: 1.481949e-02	ci left: 3.816019e-02	ci right 3.873048e-02	k: 67278	n:1750000
KS ci ratio: 6.798853e-02	ci left: 1.831526e-03	ci right 1.960988e-03	k: 3317	n:1750000
PTPN11   1750000 perm   1660 sec   (1054 perm/sec)   p_kst 1.895429e-03   p_cons 3.844457e-02   p_joint 6.994286e-04

Joint ci ratio: 1.114613e-01	ci left: 6.631227e-04	ci right 7.419443e-04	k: 1235	n:1760000
Cons ci ratio: 1.477886e-02	ci left: 3.815338e-02	ci right 3.872200e-02	k: 67649	n:1760000
KS ci ratio: 6.776419e-02	ci left: 1.833408e-03	ci right 1.962558e-03	k: 3339	n:1760000
PTPN11   1760000 perm   1677 sec   (1050 perm/sec)   p_kst 1.897159e-03   p_cons 3.843693e-02   p_joint 7.017045e-04

Joint ci ratio: 1.112366e-01	ci left: 6.621224e-04	ci right 7.406560e-04	k: 1240	n:1770000
Cons ci ratio: 1.473608e-02	ci left: 3.815904e-02	ci right 3.872608e-02	k: 68042	n:1770000
KS ci ratio: 6.763281e-02	ci left: 1.830270e-03	ci right 1.958940e-03	k: 3352	n:1770000
PTPN11   1770000 perm   1694 sec   (1045 perm/sec)   p_kst 1.893785e-03   p_cons 3.844181e-02   p_joint 7.005650e-04

Joint ci ratio: 1.109687e-01	ci left: 6.616798e-04	ci right 7.399595e-04	k: 1246	n:1780000
Cons ci ratio: 1.469814e-02	ci left: 3.814225e-02	ci right 3.870757e-02	k: 68395	n:1780000
KS ci ratio: 6.745202e-02	ci left: 1.829929e-03	ci right 1.958217e-03	k: 3370	n:1780000
PTPN11   1780000 perm   1711 sec   (1040 perm/sec)   p_kst 1.893258e-03   p_cons 3.842416e-02   p_joint 7.000000e-04

Joint ci ratio: 1.106586e-01	ci left: 6.617855e-04	ci right 7.398446e-04	k: 1253	n:1790000
Cons ci ratio: 1.465849e-02	ci left: 3.813566e-02	ci right 3.869935e-02	k: 68766	n:1790000
KS ci ratio: 6.730252e-02	ci left: 1.827944e-03	ci right 1.955799e-03	k: 3385	n:1790000
PTPN11   1790000 perm   1728 sec   (1036 perm/sec)   p_kst 1.891061e-03   p_cons 3.841676e-02   p_joint 7.000000e-04

Joint ci ratio: 1.103948e-01	ci left: 6.613501e-04	ci right 7.391598e-04	k: 1259	n:1800000
Cons ci ratio: 1.461554e-02	ci left: 3.814742e-02	ci right 3.870962e-02	k: 69170	n:1800000
KS ci ratio: 6.716390e-02	ci left: 1.825436e-03	ci right 1.952842e-03	k: 3399	n:1800000
PTPN11   1800000 perm   1745 sec   (1032 perm/sec)   p_kst 1.888333e-03   p_cons 3.842778e-02   p_joint 6.994444e-04

Joint ci ratio: 1.107474e-01	ci left: 6.533984e-04	ci right 7.305341e-04	k: 1251	n:1810000
Cons ci ratio: 1.457775e-02	ci left: 3.813483e-02	ci right 3.869537e-02	k: 69530	n:1810000
KS ci ratio: 6.700648e-02	ci left: 1.824042e-03	ci right 1.951041e-03	k: 3415	n:1810000
PTPN11   1810000 perm   1762 sec   (1027 perm/sec)   p_kst 1.886740e-03   p_cons 3.841436e-02   p_joint 6.911602e-04

Joint ci ratio: 1.105710e-01	ci left: 6.519452e-04	ci right 7.287789e-04	k: 1255	n:1820000
Cons ci ratio: 1.453680e-02	ci left: 3.813990e-02	ci right 3.869893e-02	k: 69922	n:1820000
KS ci ratio: 6.685992e-02	ci left: 1.822124e-03	ci right 1.948700e-03	k: 3430	n:1820000
PTPN11   1820000 perm   1780 sec   (1023 perm/sec)   p_kst 1.884615e-03   p_cons 3.841868e-02   p_joint 6.895604e-04

Joint ci ratio: 1.103079e-01	ci left: 6.515708e-04	ci right 7.281657e-04	k: 1261	n:1830000
Cons ci ratio: 1.449791e-02	ci left: 3.813621e-02	ci right 3.869367e-02	k: 70298	n:1830000
KS ci ratio: 6.668524e-02	ci left: 1.821839e-03	ci right 1.948052e-03	k: 3448	n:1830000
PTPN11   1830000 perm   1797 sec   (1018 perm/sec)   p_kst 1.884153e-03   p_cons 3.841421e-02   p_joint 6.890710e-04

Joint ci ratio: 1.098301e-01	ci left: 6.538434e-04	ci right 7.303510e-04	k: 1272	n:1840000
Cons ci ratio: 1.445815e-02	ci left: 3.813851e-02	ci right 3.869447e-02	k: 70685	n:1840000
KS ci ratio: 6.649271e-02	ci left: 1.822626e-03	ci right 1.948515e-03	k: 3468	n:1840000
PTPN11   1840000 perm   1815 sec   (1014 perm/sec)   p_kst 1.884783e-03   p_cons 3.841576e-02   p_joint 6.913043e-04

Joint ci ratio: 1.094866e-01	ci left: 6.545148e-04	ci right 7.308460e-04	k: 1280	n:1850000
Cons ci ratio: 1.441777e-02	ci left: 3.814564e-02	ci right 3.870013e-02	k: 71081	n:1850000
KS ci ratio: 6.633041e-02	ci left: 1.821810e-03	ci right 1.947325e-03	k: 3485	n:1850000
PTPN11   1850000 perm   1834 sec   (1009 perm/sec)   p_kst 1.883784e-03   p_cons 3.842216e-02   p_joint 6.918919e-04

Joint ci ratio: 1.092311e-01	ci left: 6.541335e-04	ci right 7.302308e-04	k: 1286	n:1860000
Cons ci ratio: 1.437773e-02	ci left: 3.815269e-02	ci right 3.870574e-02	k: 71477	n:1860000
KS ci ratio: 6.617876e-02	ci left: 1.820475e-03	ci right 1.945600e-03	k: 3501	n:1860000
PTPN11   1860000 perm   1853 sec   (1004 perm/sec)   p_kst 1.882258e-03   p_cons 3.842849e-02   p_joint 6.913978e-04

Joint ci ratio: 1.090619e-01	ci left: 6.527161e-04	ci right 7.285232e-04	k: 1290	n:1870000
Cons ci ratio: 1.433948e-02	ci left: 3.815221e-02	ci right 3.870377e-02	k: 71859	n:1870000
KS ci ratio: 6.603755e-02	ci left: 1.818629e-03	ci right 1.943350e-03	k: 3516	n:1870000
PTPN11   1870000 perm   1870 sec   (1000 perm/sec)   p_kst 1.880214e-03   p_cons 3.842727e-02   p_joint 6.898396e-04

Joint ci ratio: 1.087255e-01	ci left: 6.533836e-04	ci right 7.290192e-04	k: 1298	n:1880000
Cons ci ratio: 1.430235e-02	ci left: 3.814750e-02	ci right 3.869754e-02	k: 72233	n:1880000
KS ci ratio: 6.589725e-02	ci left: 1.816802e-03	ci right 1.941123e-03	k: 3531	n:1880000
PTPN11   1880000 perm   1888 sec   (996 perm/sec)   p_kst 1.878191e-03   p_cons 3.842181e-02   p_joint 6.904255e-04

Joint ci ratio: 1.090623e-01	ci left: 6.458089e-04	ci right 7.208141e-04	k: 1290	n:1890000
Cons ci ratio: 1.426816e-02	ci left: 3.812912e-02	ci right 3.867758e-02	k: 72581	n:1890000
KS ci ratio: 6.570218e-02	ci left: 1.818118e-03	ci right 1.942146e-03	k: 3552	n:1890000
PTPN11   1890000 perm   1906 sec   (992 perm/sec)   p_kst 1.879365e-03   p_cons 3.840265e-02   p_joint 6.825397e-04

Joint ci ratio: 1.086840e-01	ci left: 6.470178e-04	ci right 7.218861e-04	k: 1299	n:1900000
Cons ci ratio: 1.423148e-02	ci left: 3.812511e-02	ci right 3.867209e-02	k: 72956	n:1900000
KS ci ratio: 6.550883e-02	ci left: 1.819420e-03	ci right 1.943158e-03	k: 3573	n:1900000
PTPN11   1900000 perm   1924 sec   (988 perm/sec)   p_kst 1.880526e-03   p_cons 3.839789e-02   p_joint 6.836842e-04

Joint ci ratio: 1.089361e-01	ci left: 6.405743e-04	ci right 7.148799e-04	k: 1293	n:1910000
Cons ci ratio: 1.419659e-02	ci left: 3.811331e-02	ci right 3.865877e-02	k: 73316	n:1910000
KS ci ratio: 6.535361e-02	ci left: 1.818650e-03	ci right 1.942031e-03	k: 3590	n:1910000
PTPN11   1910000 perm   1942 sec   (983 perm/sec)   p_kst 1.879581e-03   p_cons 3.838534e-02   p_joint 6.769634e-04

Joint ci ratio: 1.087682e-01	ci left: 6.392645e-04	ci right 7.132967e-04	k: 1297	n:1920000
Cons ci ratio: 1.415756e-02	ci left: 3.812448e-02	ci right 3.866858e-02	k: 73720	n:1920000
KS ci ratio: 6.524481e-02	ci left: 1.815325e-03	ci right 1.938268e-03	k: 3602	n:1920000
PTPN11   1920000 perm   1960 sec   (979 perm/sec)   p_kst 1.876042e-03   p_cons 3.839583e-02   p_joint 6.755208e-04

Joint ci ratio: 1.085177e-01	ci left: 6.389766e-04	ci right 7.127941e-04	k: 1303	n:1930000
Cons ci ratio: 1.412301e-02	ci left: 3.811384e-02	ci right 3.865646e-02	k: 74082	n:1930000
KS ci ratio: 6.501952e-02	ci left: 1.818662e-03	ci right 1.941390e-03	k: 3627	n:1930000
PTPN11   1930000 perm   1978 sec   (975 perm/sec)   p_kst 1.879275e-03   p_cons 3.838446e-02   p_joint 6.751295e-04

Joint ci ratio: 1.083103e-01	ci left: 6.381903e-04	ci right 7.117671e-04	k: 1308	n:1940000
Cons ci ratio: 1.408586e-02	ci left: 3.811821e-02	ci right 3.865945e-02	k: 74473	n:1940000
KS ci ratio: 6.484992e-02	ci left: 1.818922e-03	ci right 1.941335e-03	k: 3646	n:1940000
PTPN11   1940000 perm   1997 sec   (972 perm/sec)   p_kst 1.879381e-03   p_cons 3.838814e-02   p_joint 6.742268e-04

Joint ci ratio: 1.080629e-01	ci left: 6.379112e-04	ci right 7.112771e-04	k: 1314	n:1950000
Cons ci ratio: 1.405252e-02	ci left: 3.810414e-02	ci right 3.864389e-02	k: 74828	n:1950000
KS ci ratio: 6.464633e-02	ci left: 1.821198e-03	ci right 1.943365e-03	k: 3669	n:1950000
PTPN11   1950000 perm   2016 sec   (967 perm/sec)   p_kst 1.881538e-03   p_cons 3.837333e-02   p_joint 6.738462e-04

Joint ci ratio: 1.078581e-01	ci left: 6.371387e-04	ci right 7.102681e-04	k: 1319	n:1960000
Cons ci ratio: 1.401640e-02	ci left: 3.810598e-02	ci right 3.864436e-02	k: 75214	n:1960000
KS ci ratio: 6.448839e-02	ci left: 1.820942e-03	ci right 1.942782e-03	k: 3687	n:1960000
PTPN11   1960000 perm   2034 sec   (963 perm/sec)   p_kst 1.881122e-03   p_cons 3.837449e-02   p_joint 6.729592e-04

Joint ci ratio: 1.077358e-01	ci left: 6.353862e-04	ci right 7.082266e-04	k: 1322	n:1970000
Cons ci ratio: 1.398134e-02	ci left: 3.810376e-02	ci right 3.864075e-02	k: 75592	n:1970000
KS ci ratio: 6.428817e-02	ci left: 1.823186e-03	ci right 1.944783e-03	k: 3710	n:1970000
PTPN11   1970000 perm   2053 sec   (960 perm/sec)   p_kst 1.883249e-03   p_cons 3.837157e-02   p_joint 6.710660e-04

Joint ci ratio: 1.074519e-01	ci left: 6.356174e-04	ci right 7.082801e-04	k: 1329	n:1980000
Cons ci ratio: 1.394167e-02	ci left: 3.812723e-02	ci right 3.866301e-02	k: 76021	n:1980000
KS ci ratio: 6.410700e-02	ci left: 1.824414e-03	ci right 1.945738e-03	k: 3731	n:1980000
PTPN11   1980000 perm   2071 sec   (956 perm/sec)   p_kst 1.884343e-03   p_cons 3.839444e-02   p_joint 6.712121e-04

Joint ci ratio: 1.076955e-01	ci left: 6.294893e-04	ci right 7.016249e-04	k: 1323	n:1990000
Cons ci ratio: 1.390545e-02	ci left: 3.813394e-02	ci right 3.866841e-02	k: 76417	n:1990000
KS ci ratio: 6.395297e-02	ci left: 1.824146e-03	ci right 1.945150e-03	k: 3749	n:1990000
PTPN11   1990000 perm   2090 sec   (952 perm/sec)   p_kst 1.883920e-03   p_cons 3.840050e-02   p_joint 6.648241e-04

Joint ci ratio: 1.077771e-01	ci left: 6.253688e-04	ci right 6.970899e-04	k: 1321	n:2000000
Cons ci ratio: 1.387083e-02	ci left: 3.813360e-02	ci right 3.866673e-02	k: 76799	n:2000000
KS ci ratio: 6.378309e-02	ci left: 1.824866e-03	ci right 1.945584e-03	k: 3769	n:2000000
PTPN11   2000000 perm   2109 sec   (948 perm/sec)   p_kst 1.884500e-03   p_cons 3.839950e-02   p_joint 6.605000e-04

Joint ci ratio: 1.074525e-01	ci left: 6.261305e-04	ci right 6.977090e-04	k: 1329	n:2010000
Cons ci ratio: 1.383880e-02	ci left: 3.812088e-02	ci right 3.865259e-02	k: 77156	n:2010000
KS ci ratio: 6.367350e-02	ci left: 1.822151e-03	ci right 1.942475e-03	k: 3782	n:2010000
PTPN11   2010000 perm   2128 sec   (944 perm/sec)   p_kst 1.881592e-03   p_cons 3.838607e-02   p_joint 6.611940e-04

Joint ci ratio: 1.028009e-01	ci left: 6.823227e-04	ci right 7.567445e-04	k: 1452	n:2020000
Cons ci ratio: 1.380283e-02	ci left: 3.813049e-02	ci right 3.866094e-02	k: 77558	n:2020000
KS ci ratio: 6.348911e-02	ci left: 1.823849e-03	ci right 1.943923e-03	k: 3804	n:2020000
PTPN11   2020000 perm   2148 sec   (941 perm/sec)   p_kst 1.883168e-03   p_cons 3.839505e-02   p_joint 7.188119e-04

Joint ci ratio: 1.040629e-01	ci left: 6.621657e-04	ci right 7.353299e-04	k: 1417	n:2030000
Cons ci ratio: 1.376906e-02	ci left: 3.812969e-02	ci right 3.865882e-02	k: 77939	n:2030000
KS ci ratio: 6.333118e-02	ci left: 1.824076e-03	ci right 1.943855e-03	k: 3823	n:2030000
PTPN11   2030000 perm   2167 sec   (937 perm/sec)   p_kst 1.883251e-03   p_cons 3.839360e-02   p_joint 6.980296e-04

Joint ci ratio: 1.038070e-01	ci left: 6.622620e-04	ci right 7.352459e-04	k: 1424	n:2040000
Cons ci ratio: 1.373600e-02	ci left: 3.812646e-02	ci right 3.865426e-02	k: 78315	n:2040000
KS ci ratio: 6.314151e-02	ci left: 1.826230e-03	ci right 1.945779e-03	k: 3846	n:2040000
PTPN11   2040000 perm   2186 sec   (933 perm/sec)   p_kst 1.885294e-03   p_cons 3.838971e-02   p_joint 6.980392e-04

Joint ci ratio: 1.043954e-01	ci left: 6.514296e-04	ci right 7.236515e-04	k: 1408	n:2050000
Cons ci ratio: 1.370335e-02	ci left: 3.812229e-02	ci right 3.864877e-02	k: 78689	n:2050000
KS ci ratio: 6.301883e-02	ci left: 1.824523e-03	ci right 1.943720e-03	k: 3861	n:2050000
PTPN11   2050000 perm   2205 sec   (930 perm/sec)   p_kst 1.883415e-03   p_cons 3.838488e-02   p_joint 6.868293e-04

Joint ci ratio: 1.041370e-01	ci left: 6.515768e-04	ci right 7.236253e-04	k: 1415	n:2060000
Cons ci ratio: 1.367004e-02	ci left: 3.812300e-02	ci right 3.864820e-02	k: 79073	n:2060000
KS ci ratio: 6.287250e-02	ci left: 1.824267e-03	ci right 1.943160e-03	k: 3879	n:2060000
PTPN11   2060000 perm   2224 sec   (926 perm/sec)   p_kst 1.883010e-03   p_cons 3.838495e-02   p_joint 6.868932e-04

Joint ci ratio: 1.037347e-01	ci left: 6.536049e-04	ci right 7.255816e-04	k: 1426	n:2070000
Cons ci ratio: 1.363643e-02	ci left: 3.812659e-02	ci right 3.865054e-02	k: 79463	n:2070000
KS ci ratio: 6.270301e-02	ci left: 1.825440e-03	ci right 1.944077e-03	k: 3900	n:2070000
PTPN11   2070000 perm   2243 sec   (923 perm/sec)   p_kst 1.884058e-03   p_cons 3.838792e-02   p_joint 6.888889e-04

Joint ci ratio: 1.033371e-01	ci left: 6.556142e-04	ci right 7.275185e-04	k: 1437	n:2080000
Cons ci ratio: 1.360183e-02	ci left: 3.813686e-02	ci right 3.865962e-02	k: 79867	n:2080000
KS ci ratio: 6.254287e-02	ci left: 1.826128e-03	ci right 1.944496e-03	k: 3920	n:2080000
PTPN11   2080000 perm   2263 sec   (919 perm/sec)   p_kst 1.884615e-03   p_cons 3.839760e-02   p_joint 6.908654e-04

Joint ci ratio: 1.031580e-01	ci left: 6.548078e-04	ci right 7.264917e-04	k: 1442	n:2090000
Cons ci ratio: 1.357004e-02	ci left: 3.813321e-02	ci right 3.865468e-02	k: 80242	n:2090000
KS ci ratio: 6.239189e-02	ci left: 1.826340e-03	ci right 1.944425e-03	k: 3939	n:2090000
PTPN11   2090000 perm   2283 sec   (915 perm/sec)   p_kst 1.884689e-03   p_cons 3.839330e-02   p_joint 6.899522e-04

Joint ci ratio: 1.029798e-01	ci left: 6.540092e-04	ci right 7.254745e-04	k: 1447	n:2100000
Cons ci ratio: 1.354074e-02	ci left: 3.811724e-02	ci right 3.863736e-02	k: 80591	n:2100000
KS ci ratio: 6.224986e-02	ci left: 1.826081e-03	ci right 1.943871e-03	k: 3957	n:2100000
PTPN11   2100000 perm   2303 sec   (912 perm/sec)   p_kst 1.884286e-03   p_cons 3.837667e-02   p_joint 6.890476e-04

Joint ci ratio: 1.026964e-01	ci left: 6.546036e-04	ci right 7.259252e-04	k: 1455	n:2110000
Cons ci ratio: 1.350617e-02	ci left: 3.813120e-02	ci right 3.865017e-02	k: 81003	n:2110000
KS ci ratio: 6.210099e-02	ci left: 1.826291e-03	ci right 1.943803e-03	k: 3976	n:2110000
PTPN11   2110000 perm   2323 sec   (908 perm/sec)   p_kst 1.884360e-03   p_cons 3.839005e-02   p_joint 6.895735e-04

Joint ci ratio: 1.021366e-01	ci left: 6.588698e-04	ci right 7.302414e-04	k: 1471	n:2120000
Cons ci ratio: 1.347564e-02	ci left: 3.812433e-02	ci right 3.864203e-02	k: 81371	n:2120000
KS ci ratio: 6.184472e-02	ci left: 1.833002e-03	ci right 1.950441e-03	k: 4009	n:2120000
PTPN11   2120000 perm   2343 sec   (905 perm/sec)   p_kst 1.891038e-03   p_cons 3.838255e-02   p_joint 6.938679e-04

Joint ci ratio: 1.018946e-01	ci left: 6.589791e-04	ci right 7.301832e-04	k: 1478	n:2130000
Cons ci ratio: 1.344216e-02	ci left: 3.813485e-02	ci right 3.865139e-02	k: 81776	n:2130000
KS ci ratio: 6.169873e-02	ci left: 1.833178e-03	ci right 1.950342e-03	k: 4028	n:2130000
PTPN11   2130000 perm   2363 sec   (901 perm/sec)   p_kst 1.891080e-03   p_cons 3.839249e-02   p_joint 6.938967e-04

Joint ci ratio: 1.023109e-01	ci left: 6.504353e-04	ci right 7.210207e-04	k: 1466	n:2140000
Cons ci ratio: 1.340987e-02	ci left: 3.814014e-02	ci right 3.865550e-02	k: 82170	n:2140000
KS ci ratio: 6.154614e-02	ci left: 1.833814e-03	ci right 1.950718e-03	k: 4048	n:2140000
PTPN11   2140000 perm   2383 sec   (898 perm/sec)   p_kst 1.891589e-03   p_cons 3.839720e-02   p_joint 6.850467e-04

Joint ci ratio: 1.018949e-01	ci left: 6.528489e-04	ci right 7.233909e-04	k: 1478	n:2150000
Cons ci ratio: 1.337805e-02	ci left: 3.814400e-02	ci right 3.865818e-02	k: 82561	n:2150000
KS ci ratio: 6.141737e-02	ci left: 1.833070e-03	ci right 1.949674e-03	k: 4065	n:2150000
PTPN11   2150000 perm   2403 sec   (895 perm/sec)   p_kst 1.890698e-03   p_cons 3.840047e-02   p_joint 6.874419e-04

Joint ci ratio: 1.016889e-01	ci left: 6.525335e-04	ci right 7.228904e-04	k: 1484	n:2160000
Cons ci ratio: 1.334872e-02	ci left: 3.813536e-02	ci right 3.864829e-02	k: 82925	n:2160000
KS ci ratio: 6.131951e-02	ci left: 1.830510e-03	ci right 1.946758e-03	k: 4078	n:2160000
PTPN11   2160000 perm   2424 sec   (891 perm/sec)   p_kst 1.887963e-03   p_cons 3.839120e-02   p_joint 6.870370e-04

Joint ci ratio: 1.015523e-01	ci left: 6.513229e-04	ci right 7.214493e-04	k: 1488	n:2170000
Cons ci ratio: 1.331418e-02	ci left: 3.815666e-02	ci right 3.866854e-02	k: 83354	n:2170000
KS ci ratio: 6.119964e-02	ci left: 1.829334e-03	ci right 1.945273e-03	k: 4094	n:2170000
PTPN11   2170000 perm   2445 sec   (887 perm/sec)   p_kst 1.886636e-03   p_cons 3.841198e-02   p_joint 6.857143e-04

Joint ci ratio: 1.012467e-01	ci left: 6.523590e-04	ci right 7.223729e-04	k: 1497	n:2180000
Cons ci ratio: 1.328412e-02	ci left: 3.815445e-02	ci right 3.866513e-02	k: 83732	n:2180000
KS ci ratio: 6.098394e-02	ci left: 1.834043e-03	ci right 1.949856e-03	k: 4123	n:2180000
PTPN11   2180000 perm   2467 sec   (884 perm/sec)   p_kst 1.891284e-03   p_cons 3.840917e-02   p_joint 6.866972e-04

Joint ci ratio: 1.010445e-01	ci left: 6.520506e-04	ci right 7.218835e-04	k: 1503	n:2190000
Cons ci ratio: 1.325532e-02	ci left: 3.814634e-02	ci right 3.865580e-02	k: 84097	n:2190000
KS ci ratio: 6.084394e-02	ci left: 1.834212e-03	ci right 1.949760e-03	k: 4142	n:2190000
PTPN11   2190000 perm   2488 sec   (880 perm/sec)   p_kst 1.891324e-03   p_cons 3.840046e-02   p_joint 6.863014e-04

Joint ci ratio: 1.013486e-01	ci left: 6.450992e-04	ci right 7.144079e-04	k: 1494	n:2200000
Cons ci ratio: 1.322500e-02	ci left: 3.814782e-02	ci right 3.865613e-02	k: 84483	n:2200000
KS ci ratio: 6.069029e-02	ci left: 1.835275e-03	ci right 1.950588e-03	k: 4163	n:2200000
PTPN11   2200000 perm   2509 sec   (877 perm/sec)   p_kst 1.892273e-03   p_cons 3.840136e-02   p_joint 6.790909e-04

Joint ci ratio: 1.011122e-01	ci left: 6.452674e-04	ci right 7.144229e-04	k: 1501	n:2210000
Cons ci ratio: 1.319852e-02	ci left: 3.812899e-02	ci right 3.863602e-02	k: 84824	n:2210000
KS ci ratio: 6.058859e-02	ci left: 1.833209e-03	ci right 1.948193e-03	k: 4177	n:2210000
PTPN11   2210000 perm   2530 sec   (874 perm/sec)   p_kst 1.890045e-03   p_cons 3.838190e-02   p_joint 6.791855e-04

Joint ci ratio: 1.008105e-01	ci left: 6.463125e-04	ci right 7.153611e-04	k: 1510	n:2220000
Cons ci ratio: 1.316810e-02	ci left: 3.813323e-02	ci right 3.863914e-02	k: 85216	n:2220000
KS ci ratio: 6.042245e-02	ci left: 1.835155e-03	ci right 1.949934e-03	k: 4200	n:2220000
PTPN11   2220000 perm   2551 sec   (870 perm/sec)   p_kst 1.891892e-03   p_cons 3.838559e-02   p_joint 6.801802e-04

Joint ci ratio: 1.006774e-01	ci left: 6.451628e-04	ci right 7.139921e-04	k: 1514	n:2230000
Cons ci ratio: 1.313901e-02	ci left: 3.813118e-02	ci right 3.863594e-02	k: 85594	n:2230000
KS ci ratio: 6.027196e-02	ci left: 1.836201e-03	ci right 1.950749e-03	k: 4221	n:2230000
PTPN11   2230000 perm   2571 sec   (867 perm/sec)   p_kst 1.892825e-03   p_cons 3.838296e-02   p_joint 6.789238e-04

Joint ci ratio: 1.009111e-01	ci left: 6.392363e-04	ci right 7.076010e-04	k: 1507	n:2240000
Cons ci ratio: 1.311249e-02	ci left: 3.811580e-02	ci right 3.861933e-02	k: 85942	n:2240000
KS ci ratio: 6.018659e-02	ci left: 1.833280e-03	ci right 1.947478e-03	k: 4233	n:2240000
PTPN11   2240000 perm   2592 sec   (864 perm/sec)   p_kst 1.889732e-03   p_cons 3.836696e-02   p_joint 6.727679e-04

Joint ci ratio: 1.023476e-01	ci left: 6.182026e-04	ci right 6.853156e-04	k: 1465	n:2250000
Cons ci ratio: 1.308353e-02	ci left: 3.811517e-02	ci right 3.861757e-02	k: 86323	n:2250000
KS ci ratio: 6.002372e-02	ci left: 1.835201e-03	ci right 1.949199e-03	k: 4256	n:2250000
PTPN11   2250000 perm   2614 sec   (861 perm/sec)   p_kst 1.891556e-03   p_cons 3.836578e-02   p_joint 6.511111e-04

Joint ci ratio: 1.021041e-01	ci left: 6.184854e-04	ci right 6.854597e-04	k: 1472	n:2260000
Cons ci ratio: 1.305508e-02	ci left: 3.811279e-02	ci right 3.861406e-02	k: 86700	n:2260000
KS ci ratio: 5.993236e-02	ci left: 1.832746e-03	ci right 1.946412e-03	k: 4269	n:2260000
PTPN11   2260000 perm   2635 sec   (858 perm/sec)   p_kst 1.888938e-03   p_cons 3.836283e-02   p_joint 6.513274e-04

Joint ci ratio: 1.018968e-01	ci left: 6.183365e-04	ci right 6.851507e-04	k: 1478	n:2270000
Cons ci ratio: 1.302789e-02	ci left: 3.810428e-02	ci right 3.860439e-02	k: 87063	n:2270000
KS ci ratio: 5.983441e-02	ci left: 1.830747e-03	ci right 1.944098e-03	k: 4283	n:2270000
PTPN11   2270000 perm   2656 sec   (855 perm/sec)   p_kst 1.886784e-03   p_cons 3.835374e-02   p_joint 6.511013e-04

Joint ci ratio: 1.017593e-01	ci left: 6.173342e-04	ci right 6.839447e-04	k: 1482	n:2280000
Cons ci ratio: 1.299941e-02	ci left: 3.810416e-02	ci right 3.860316e-02	k: 87445	n:2280000
KS ci ratio: 5.969522e-02	ci left: 1.831359e-03	ci right 1.944474e-03	k: 4303	n:2280000
PTPN11   2280000 perm   2678 sec   (852 perm/sec)   p_kst 1.887281e-03   p_cons 3.835307e-02   p_joint 6.500000e-04

Joint ci ratio: 1.015882e-01	ci left: 6.167663e-04	ci right 6.831969e-04	k: 1487	n:2290000
Cons ci ratio: 1.297119e-02	ci left: 3.810360e-02	ci right 3.860150e-02	k: 87826	n:2290000
KS ci ratio: 5.962611e-02	ci left: 1.827663e-03	ci right 1.940415e-03	k: 4313	n:2290000
PTPN11   2290000 perm   2700 sec   (848 perm/sec)   p_kst 1.883406e-03   p_cons 3.835197e-02   p_joint 6.493450e-04

Joint ci ratio: 1.021393e-01	ci left: 6.073053e-04	ci right 6.730930e-04	k: 1471	n:2300000
Cons ci ratio: 1.294415e-02	ci left: 3.809741e-02	ci right 3.859419e-02	k: 88194	n:2300000
KS ci ratio: 5.951588e-02	ci left: 1.826569e-03	ci right 1.939038e-03	k: 4329	n:2300000
PTPN11   2300000 perm   2721 sec   (845 perm/sec)   p_kst 1.882174e-03   p_cons 3.834522e-02   p_joint 6.395652e-04

Joint ci ratio: 1.019663e-01	ci left: 6.067855e-04	ci right 6.723989e-04	k: 1476	n:2310000
Cons ci ratio: 1.291636e-02	ci left: 3.809646e-02	ci right 3.859215e-02	k: 88574	n:2310000
KS ci ratio: 5.933108e-02	ci left: 1.830177e-03	ci right 1.942506e-03	k: 4356	n:2310000
PTPN11   2310000 perm   2743 sec   (842 perm/sec)   p_kst 1.885714e-03   p_cons 3.834372e-02   p_joint 6.389610e-04

Joint ci ratio: 1.030187e-01	ci left: 5.915702e-04	ci right 6.562386e-04	k: 1446	n:2320000
Cons ci ratio: 1.288868e-02	ci left: 3.809594e-02	ci right 3.859055e-02	k: 88955	n:2320000
KS ci ratio: 5.919536e-02	ci left: 1.830781e-03	ci right 1.942882e-03	k: 4376	n:2320000
PTPN11   2320000 perm   2764 sec   (839 perm/sec)   p_kst 1.886207e-03   p_cons 3.834267e-02   p_joint 6.232759e-04

Joint ci ratio: 1.028412e-01	ci left: 5.911220e-04	ci right 6.556232e-04	k: 1451	n:2330000
Cons ci ratio: 1.286050e-02	ci left: 3.809928e-02	ci right 3.859285e-02	k: 89345	n:2330000
KS ci ratio: 5.908076e-02	ci left: 1.830112e-03	ci right 1.941947e-03	k: 4393	n:2330000
PTPN11   2330000 perm   2786 sec   (836 perm/sec)   p_kst 1.885408e-03   p_cons 3.834549e-02   p_joint 6.227468e-04

Joint ci ratio: 1.027706e-01	ci left: 5.894285e-04	ci right 6.536981e-04	k: 1453	n:2340000
Cons ci ratio: 1.283295e-02	ci left: 3.810004e-02	ci right 3.859255e-02	k: 89729	n:2340000
KS ci ratio: 5.896013e-02	ci left: 1.829870e-03	ci right 1.941454e-03	k: 4411	n:2340000
PTPN11   2340000 perm   2808 sec   (833 perm/sec)   p_kst 1.885043e-03   p_cons 3.834573e-02   p_joint 6.209402e-04

Joint ci ratio: 1.025944e-01	ci left: 5.889933e-04	ci right 6.530987e-04	k: 1458	n:2350000
Cons ci ratio: 1.280573e-02	ci left: 3.809995e-02	ci right 3.859140e-02	k: 90111	n:2350000
KS ci ratio: 5.886687e-02	ci left: 1.827953e-03	ci right 1.939238e-03	k: 4425	n:2350000
PTPN11   2350000 perm   2829 sec   (831 perm/sec)   p_kst 1.882979e-03   p_cons 3.834511e-02   p_joint 6.204255e-04

Joint ci ratio: 1.027002e-01	ci left: 5.852590e-04	ci right 6.490276e-04	k: 1455	n:2360000
Cons ci ratio: 1.277882e-02	ci left: 3.809901e-02	ci right 3.858941e-02	k: 90491	n:2360000
KS ci ratio: 5.875416e-02	ci left: 1.827305e-03	ci right 1.938330e-03	k: 4442	n:2360000
PTPN11   2360000 perm   2851 sec   (828 perm/sec)   p_kst 1.882203e-03   p_cons 3.834364e-02   p_joint 6.165254e-04

Joint ci ratio: 1.024892e-01	ci left: 5.852562e-04	ci right 6.488857e-04	k: 1461	n:2370000
Cons ci ratio: 1.275143e-02	ci left: 3.810186e-02	ci right 3.859125e-02	k: 90880	n:2370000
KS ci ratio: 5.861577e-02	ci left: 1.828325e-03	ci right 1.939142e-03	k: 4463	n:2370000
PTPN11   2370000 perm   2873 sec   (825 perm/sec)   p_kst 1.883122e-03   p_cons 3.834599e-02   p_joint 6.164557e-04

Joint ci ratio: 1.022099e-01	ci left: 5.860725e-04	ci right 6.496066e-04	k: 1469	n:2380000
Cons ci ratio: 1.272602e-02	ci left: 3.809423e-02	ci right 3.858253e-02	k: 91244	n:2380000
KS ci ratio: 5.848489e-02	ci left: 1.828924e-03	ci right 1.939521e-03	k: 4483	n:2380000
PTPN11   2380000 perm   2895 sec   (822 perm/sec)   p_kst 1.883613e-03   p_cons 3.833782e-02   p_joint 6.172269e-04

Joint ci ratio: 1.020020e-01	ci left: 5.860666e-04	ci right 6.494631e-04	k: 1475	n:2390000
Cons ci ratio: 1.269940e-02	ci left: 3.809458e-02	ci right 3.858186e-02	k: 91627	n:2390000
KS ci ratio: 5.837436e-02	ci left: 1.828280e-03	ci right 1.938623e-03	k: 4500	n:2390000
PTPN11   2390000 perm   2917 sec   (819 perm/sec)   p_kst 1.882845e-03   p_cons 3.833766e-02   p_joint 6.171548e-04

Joint ci ratio: 1.031984e-01	ci left: 5.698213e-04	ci right 6.322273e-04	k: 1441	n:2400000
Cons ci ratio: 1.267330e-02	ci left: 3.809285e-02	ci right 3.857910e-02	k: 92005	n:2400000
KS ci ratio: 5.823218e-02	ci left: 1.829695e-03	ci right 1.939845e-03	k: 4522	n:2400000
PTPN11   2400000 perm   2939 sec   (817 perm/sec)   p_kst 1.884167e-03   p_cons 3.833542e-02   p_joint 6.004167e-04

Joint ci ratio: 1.030913e-01	ci left: 5.686696e-04	ci right 6.308809e-04	k: 1444	n:2410000
Cons ci ratio: 1.264401e-02	ci left: 3.811058e-02	ci right 3.859592e-02	k: 92430	n:2410000
KS ci ratio: 5.814233e-02	ci left: 1.827828e-03	ci right 1.937690e-03	k: 4536	n:2410000
PTPN11   2410000 perm   2961 sec   (814 perm/sec)   p_kst 1.882158e-03   p_cons 3.835270e-02   p_joint 5.991701e-04

Joint ci ratio: 1.029489e-01	ci left: 5.679300e-04	ci right 6.299694e-04	k: 1448	n:2420000
Cons ci ratio: 1.262214e-02	ci left: 3.808615e-02	ci right 3.857033e-02	k: 92753	n:2420000
KS ci ratio: 5.805289e-02	ci left: 1.825976e-03	ci right 1.935552e-03	k: 4550	n:2420000
PTPN11   2420000 perm   2983 sec   (811 perm/sec)   p_kst 1.880165e-03   p_cons 3.832769e-02   p_joint 5.983471e-04

Joint ci ratio: 1.028071e-01	ci left: 5.671965e-04	ci right 6.290654e-04	k: 1452	n:2430000
Cons ci ratio: 1.259602e-02	ci left: 3.808735e-02	ci right 3.857054e-02	k: 93138	n:2430000
KS ci ratio: 5.798295e-02	ci left: 1.822923e-03	ci right 1.932179e-03	k: 4561	n:2430000
PTPN11   2430000 perm   3006 sec   (808 perm/sec)   p_kst 1.876955e-03   p_cons 3.832840e-02   p_joint 5.975309e-04

Joint ci ratio: 1.026660e-01	ci left: 5.664692e-04	ci right 6.281687e-04	k: 1456	n:2440000
Cons ci ratio: 1.256867e-02	ci left: 3.809672e-02	ci right 3.857897e-02	k: 93543	n:2440000
KS ci ratio: 5.790058e-02	ci left: 1.820702e-03	ci right 1.929666e-03	k: 4574	n:2440000
PTPN11   2440000 perm   3029 sec   (806 perm/sec)   p_kst 1.874590e-03   p_cons 3.833730e-02   p_joint 5.967213e-04

Joint ci ratio: 1.023503e-01	ci left: 5.677364e-04	ci right 6.293723e-04	k: 1465	n:2450000
Cons ci ratio: 1.254219e-02	ci left: 3.810194e-02	ci right 3.858323e-02	k: 93938	n:2450000
KS ci ratio: 5.774924e-02	ci left: 1.822925e-03	ci right 1.931727e-03	k: 4598	n:2450000
PTPN11   2450000 perm   3051 sec   (803 perm/sec)   p_kst 1.876735e-03   p_cons 3.834204e-02   p_joint 5.979592e-04

Joint ci ratio: 1.022110e-01	ci left: 5.670129e-04	ci right 6.284815e-04	k: 1469	n:2460000
Cons ci ratio: 1.251483e-02	ci left: 3.811320e-02	ci right 3.859358e-02	k: 94348	n:2460000
KS ci ratio: 5.761157e-02	ci left: 1.824329e-03	ci right 1.932946e-03	k: 4620	n:2460000
PTPN11   2460000 perm   3074 sec   (800 perm/sec)   p_kst 1.878049e-03   p_cons 3.835285e-02   p_joint 5.971545e-04

Joint ci ratio: 1.019339e-01	ci left: 5.678735e-04	ci right 6.292586e-04	k: 1477	n:2470000
Cons ci ratio: 1.249129e-02	ci left: 3.810298e-02	ci right 3.858232e-02	k: 94705	n:2470000
KS ci ratio: 5.753077e-02	ci left: 1.822130e-03	ci right 1.930460e-03	k: 4633	n:2470000
PTPN11   2470000 perm   3097 sec   (798 perm/sec)   p_kst 1.875709e-03   p_cons 3.834211e-02   p_joint 5.979757e-04

Joint ci ratio: 1.044016e-01	ci left: 5.384785e-04	ci right 5.981816e-04	k: 1408	n:2480000
Cons ci ratio: 1.246632e-02	ci left: 3.810208e-02	ci right 3.858045e-02	k: 95085	n:2480000
KS ci ratio: 5.735764e-02	ci left: 1.825911e-03	ci right 1.934128e-03	k: 4661	n:2480000
PTPN11   2480000 perm   3120 sec   (795 perm/sec)   p_kst 1.879435e-03   p_cons 3.834073e-02   p_joint 5.677419e-04

Joint ci ratio: 1.041432e-01	ci left: 5.390538e-04	ci right 5.986638e-04	k: 1415	n:2490000
Cons ci ratio: 1.244251e-02	ci left: 3.809519e-02	ci right 3.857255e-02	k: 95450	n:2490000
KS ci ratio: 5.721662e-02	ci left: 1.827683e-03	ci right 1.935730e-03	k: 4684	n:2490000
PTPN11   2490000 perm   3143 sec   (792 perm/sec)   p_kst 1.881124e-03   p_cons 3.833333e-02   p_joint 5.682731e-04

Joint ci ratio: 9.402323e-02	ci left: 6.621260e-04	ci right 7.278394e-04	k: 1736	n:2500000
Cons ci ratio: 1.241749e-02	ci left: 3.809633e-02	ci right 3.857274e-02	k: 95835	n:2500000
KS ci ratio: 5.710703e-02	ci left: 1.827470e-03	ci right 1.935290e-03	k: 4702	n:2500000
PTPN11   2500000 perm   3166 sec   (790 perm/sec)   p_kst 1.880800e-03   p_cons 3.833400e-02   p_joint 6.944000e-04

Outputting figure to mutsig2_images.part000000000140/PTPN11.6_1842_2500000_0.0018808_0.038334_0.0006944.png
                gene_name: PTPN11
               theta_stop: 0.094 
                    nperm: 2500000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0019 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.00069 
     ci_joint_bounds_left: 0.00066 
    ci_joint_bounds_right: 0.00073 

Current progress: 32 percent done.
PTPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
PTPN4   10000 perm   2 sec   (5357 perm/sec)   p_kst 1.700000e-02   p_cons 2.385000e-01   p_joint 3.160000e-02

Joint ci ratio: 1.678361e-01	ci left: 2.431805e-02	ci right 2.882102e-02	k: 530	n:20000
Cons ci ratio: 4.916342e-02	ci left: 2.352343e-01	ci right 2.471410e-01	k: 4823	n:20000
KS ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
PTPN4   20000 perm   4 sec   (4717 perm/sec)   p_kst 1.725000e-02   p_cons 2.411500e-01   p_joint 2.650000e-02

Joint ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
Cons ci ratio: 4.002163e-02	ci left: 2.374268e-01	ci right 2.471565e-01	k: 7268	n:30000
KS ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
PTPN4   30000 perm   7 sec   (4501 perm/sec)   p_kst 1.766667e-02   p_cons 2.422667e-01   p_joint 1.953333e-02

Joint ci ratio: 1.353119e-01	ci left: 1.915790e-02	ci right 2.196231e-02	k: 821	n:40000
Cons ci ratio: 3.456332e-02	ci left: 2.391014e-01	ci right 2.475359e-01	k: 9732	n:40000
KS ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
PTPN4   40000 perm   9 sec   (4358 perm/sec)   p_kst 1.825000e-02   p_cons 2.433000e-01   p_joint 2.052500e-02

Joint ci ratio: 1.140535e-01	ci left: 2.176214e-02	ci right 2.441363e-02	k: 1153	n:50000
Cons ci ratio: 3.085449e-02	ci left: 2.402602e-01	ci right 2.478095e-01	k: 12201	n:50000
KS ci ratio: 1.279720e-01	ci left: 1.724004e-02	ci right 1.961634e-02	k: 920	n:50000
PTPN4   50000 perm   12 sec   (4242 perm/sec)   p_kst 1.840000e-02   p_cons 2.440200e-01   p_joint 2.306000e-02

Joint ci ratio: 1.146840e-01	ci left: 1.800356e-02	ci right 2.020997e-02	k: 1145	n:60000
Cons ci ratio: 2.824325e-02	ci left: 2.395889e-01	ci right 2.464693e-01	k: 14581	n:60000
KS ci ratio: 1.212086e-01	ci left: 1.609389e-02	ci right 1.818652e-02	k: 1027	n:60000
PTPN4   60000 perm   15 sec   (4123 perm/sec)   p_kst 1.711667e-02   p_cons 2.430167e-01   p_joint 1.908333e-02

Joint ci ratio: 9.998682e-02	ci left: 2.041037e-02	ci right 2.257240e-02	k: 1503	n:70000
Cons ci ratio: 2.622795e-02	ci left: 2.387313e-01	ci right 2.450901e-01	k: 16933	n:70000
KS ci ratio: 1.120433e-01	ci left: 1.622197e-02	ci right 1.816120e-02	k: 1202	n:70000
PTPN4   70000 perm   17 sec   (4033 perm/sec)   p_kst 1.717143e-02   p_cons 2.419000e-01   p_joint 2.147143e-02

Joint ci ratio: 9.830757e-02	ci left: 1.852863e-02	ci right 2.045644e-02	k: 1558	n:80000
Cons ci ratio: 2.456343e-02	ci left: 2.385000e-01	ci right 2.444437e-01	k: 19317	n:80000
KS ci ratio: 1.055063e-01	ci left: 1.606681e-02	ci right 1.786847e-02	k: 1356	n:80000
PTPN4   80000 perm   20 sec   (3962 perm/sec)   p_kst 1.695000e-02   p_cons 2.414625e-01   p_joint 1.947500e-02

Joint ci ratio: 9.651215e-02	ci left: 1.713056e-02	ci right 1.887848e-02	k: 1619	n:90000
Cons ci ratio: 2.319081e-02	ci left: 2.381644e-01	ci right 2.437634e-01	k: 21686	n:90000
KS ci ratio: 9.969267e-02	ci left: 1.604625e-02	ci right 1.774065e-02	k: 1519	n:90000
PTPN4   90000 perm   23 sec   (3891 perm/sec)   p_kst 1.687778e-02   p_cons 2.409556e-01   p_joint 1.798889e-02

Outputting figure to mutsig2_images.part000000000140/PTPN4.6_2885_90000_0.016878_0.24096_0.017989.png
                gene_name: PTPN4
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 33 percent done.
PSPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
PSPH   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.090000e-02   p_cons 8.768000e-01   p_joint 4.250000e-02

Joint ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
Cons ci ratio: 1.040090e-02	ci left: 8.719620e-01	ci right 8.811282e-01	k: 17532	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
PSPH   20000 perm   4 sec   (5485 perm/sec)   p_kst 9.650000e-03   p_cons 8.766000e-01   p_joint 3.530000e-02

Joint ci ratio: 1.758150e-01	ci left: 1.486554e-02	ci right 1.776256e-02	k: 488	n:30000
Cons ci ratio: 8.448796e-03	ci left: 8.739393e-01	ci right 8.813874e-01	k: 26331	n:30000
KS ci ratio: 2.204090e-01	ci left: 9.282959e-03	ci right 1.161331e-02	k: 312	n:30000
PSPH   30000 perm   6 sec   (5197 perm/sec)   p_kst 1.040000e-02   p_cons 8.777000e-01   p_joint 1.626667e-02

Joint ci ratio: 1.522609e-01	ci left: 1.505773e-02	ci right 1.756320e-02	k: 651	n:40000
Cons ci ratio: 7.364375e-03	ci left: 8.730337e-01	ci right 8.795116e-01	k: 35052	n:40000
KS ci ratio: 1.886845e-01	ci left: 9.667217e-03	ci right 1.170476e-02	k: 426	n:40000
PSPH   40000 perm   8 sec   (5013 perm/sec)   p_kst 1.065000e-02   p_cons 8.763000e-01   p_joint 1.627500e-02

Joint ci ratio: 1.192902e-01	ci left: 1.987756e-02	ci right 2.241846e-02	k: 1056	n:50000
Cons ci ratio: 6.586833e-03	ci left: 8.733823e-01	ci right 8.791740e-01	k: 43815	n:50000
KS ci ratio: 1.656180e-01	ci left: 1.016178e-02	ci right 1.201564e-02	k: 553	n:50000
PSPH   50000 perm   10 sec   (4861 perm/sec)   p_kst 1.106000e-02   p_cons 8.763000e-01   p_joint 2.112000e-02

Joint ci ratio: 9.537504e-02	ci left: 2.607579e-02	ci right 2.870353e-02	k: 1642	n:60000
Cons ci ratio: 6.035053e-03	ci left: 8.728318e-01	ci right 8.781318e-01	k: 52530	n:60000
KS ci ratio: 1.507074e-01	ci left: 1.030915e-02	ci right 1.200530e-02	k: 668	n:60000
PSPH   60000 perm   13 sec   (4731 perm/sec)   p_kst 1.113333e-02   p_cons 8.755000e-01   p_joint 2.736667e-02

Joint ci ratio: 8.734063e-02	ci left: 2.674839e-02	ci right 2.920523e-02	k: 1957	n:70000
Cons ci ratio: 5.715130e-03	ci left: 8.679758e-01	ci right 8.729648e-01	k: 60934	n:70000
KS ci ratio: 1.361713e-01	ci left: 1.090275e-02	ci right 1.250954e-02	k: 818	n:70000
PSPH   70000 perm   15 sec   (4617 perm/sec)   p_kst 1.168571e-02   p_cons 8.704857e-01   p_joint 2.795714e-02

Joint ci ratio: 9.174120e-02	ci left: 2.128791e-02	ci right 2.334694e-02	k: 1784	n:80000
Cons ci ratio: 5.338248e-03	ci left: 8.684686e-01	ci right 8.731295e-01	k: 69665	n:80000
KS ci ratio: 1.338175e-01	ci left: 9.901895e-03	ci right 1.133393e-02	k: 848	n:80000
PSPH   80000 perm   18 sec   (4503 perm/sec)   p_kst 1.060000e-02   p_cons 8.708125e-01   p_joint 2.230000e-02

Joint ci ratio: 9.612015e-02	ci left: 1.727158e-02	ci right 1.902634e-02	k: 1632	n:90000
Cons ci ratio: 5.028990e-03	ci left: 8.687814e-01	ci right 8.731725e-01	k: 78389	n:90000
KS ci ratio: 1.262396e-01	ci left: 9.930430e-03	ci right 1.127917e-02	k: 953	n:90000
PSPH   90000 perm   20 sec   (4409 perm/sec)   p_kst 1.058889e-02   p_cons 8.709889e-01   p_joint 1.813333e-02

Joint ci ratio: 9.269342e-02	ci left: 1.675494e-02	ci right 1.839321e-02	k: 1756	n:100000
Cons ci ratio: 4.776191e-03	ci left: 8.686449e-01	ci right 8.728136e-01	k: 87074	n:100000
KS ci ratio: 1.195337e-01	ci left: 1.000361e-02	ci right 1.128501e-02	k: 1063	n:100000
PSPH   100000 perm   23 sec   (4314 perm/sec)   p_kst 1.063000e-02   p_cons 8.707400e-01   p_joint 1.756000e-02

Joint ci ratio: 7.966618e-02	ci left: 2.067769e-02	ci right 2.240221e-02	k: 2368	n:110000
Cons ci ratio: 4.541288e-03	ci left: 8.693708e-01	ci right 8.733369e-01	k: 95850	n:110000
KS ci ratio: 1.140892e-01	ci left: 1.001203e-02	ci right 1.123216e-02	k: 1167	n:110000
PSPH   110000 perm   26 sec   (4240 perm/sec)   p_kst 1.060909e-02   p_cons 8.713636e-01   p_joint 2.152727e-02

Joint ci ratio: 7.723238e-02	ci left: 2.020434e-02	ci right 2.183559e-02	k: 2521	n:120000
Cons ci ratio: 4.348372e-03	ci left: 8.694341e-01	ci right 8.732312e-01	k: 104561	n:120000
KS ci ratio: 1.097198e-01	ci left: 9.947186e-03	ci right 1.110998e-02	k: 1262	n:120000
PSPH   120000 perm   29 sec   (4163 perm/sec)   p_kst 1.051667e-02   p_cons 8.713417e-01   p_joint 2.100833e-02

Joint ci ratio: 7.018932e-02	ci left: 2.260772e-02	ci right 2.425978e-02	k: 3045	n:130000
Cons ci ratio: 4.179699e-03	ci left: 8.694056e-01	ci right 8.730547e-01	k: 113261	n:130000
KS ci ratio: 1.047692e-01	ci left: 1.009535e-02	ci right 1.121894e-02	k: 1384	n:130000
PSPH   130000 perm   32 sec   (4089 perm/sec)   p_kst 1.064615e-02   p_cons 8.712385e-01   p_joint 2.342308e-02

Joint ci ratio: 6.197952e-02	ci left: 2.691692e-02	ci right 2.864557e-02	k: 3888	n:140000
Cons ci ratio: 4.036418e-03	ci left: 8.689814e-01	ci right 8.725032e-01	k: 121905	n:140000
KS ci ratio: 1.011482e-01	ci left: 1.007710e-02	ci right 1.115759e-02	k: 1485	n:140000
PSPH   140000 perm   35 sec   (4019 perm/sec)   p_kst 1.060714e-02   p_cons 8.707500e-01   p_joint 2.777143e-02

Joint ci ratio: 6.242689e-02	ci left: 2.481315e-02	ci right 2.641860e-02	k: 3841	n:150000
Cons ci ratio: 3.890476e-03	ci left: 8.695680e-01	ci right 8.729643e-01	k: 130691	n:150000
KS ci ratio: 9.766087e-02	ci left: 1.010741e-02	ci right 1.115164e-02	k: 1593	n:150000
PSPH   150000 perm   38 sec   (3949 perm/sec)   p_kst 1.062000e-02   p_cons 8.712733e-01   p_joint 2.560667e-02

Outputting figure to mutsig2_images.part000000000140/PSPH.5_698_150000_0.01062_0.87127_0.025607.png
                gene_name: PSPH
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 35 percent done.
PTCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
Cons ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
PTCD1   10000 perm   2 sec   (5455 perm/sec)   p_kst 3.656000e-01   p_cons 2.889000e-01   p_joint 4.458000e-01

Outputting figure to mutsig2_images.part000000000140/PTCD1.5_2131_10000_0.3656_0.2889_0.4458.png
                gene_name: PTCD1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 37 percent done.
PTDSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
Cons ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
KS ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
PTDSS1   10000 perm   2 sec   (6140 perm/sec)   p_kst 1.198000e-01   p_cons 1.742000e-01   p_joint 1.300000e-01

Joint ci ratio: 6.419219e-02	ci left: 1.520819e-01	ci right 1.622180e-01	k: 3142	n:20000
Cons ci ratio: 5.932184e-02	ci left: 1.738573e-01	ci right 1.845361e-01	k: 3583	n:20000
KS ci ratio: 7.691171e-02	ci left: 1.105115e-01	ci right 1.194007e-01	k: 2298	n:20000
PTDSS1   20000 perm   4 sec   (5374 perm/sec)   p_kst 1.149000e-01   p_cons 1.791500e-01   p_joint 1.571000e-01

Outputting figure to mutsig2_images.part000000000140/PTDSS1.5_1474_20000_0.1149_0.17915_0.1571.png
                gene_name: PTDSS1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 38 percent done.
PTGIS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
PTGIS   10000 perm   2 sec   (5511 perm/sec)   p_kst 4.160000e-02   p_cons 2.754000e-01   p_joint 2.181000e-01

Joint ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
Cons ci ratio: 4.711129e-02	ci left: 2.510538e-01	ci right 2.632169e-01	k: 5142	n:20000
KS ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
PTGIS   20000 perm   4 sec   (4806 perm/sec)   p_kst 3.900000e-02   p_cons 2.571000e-01   p_joint 8.390000e-02

Joint ci ratio: 8.345751e-02	ci left: 6.563413e-02	ci right 7.138311e-02	k: 2054	n:30000
Cons ci ratio: 3.852513e-02	ci left: 2.515986e-01	ci right 2.615153e-01	k: 7696	n:30000
KS ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
PTGIS   30000 perm   7 sec   (4589 perm/sec)   p_kst 3.770000e-02   p_cons 2.565333e-01   p_joint 6.846667e-02

Joint ci ratio: 8.481038e-02	ci left: 4.854575e-02	ci right 5.286977e-02	k: 2027	n:40000
Cons ci ratio: 3.328888e-02	ci left: 2.531207e-01	ci right 2.617145e-01	k: 10296	n:40000
KS ci ratio: 9.798104e-02	ci left: 3.658676e-02	ci right 4.038062e-02	k: 1538	n:40000
PTGIS   40000 perm   9 sec   (4444 perm/sec)   p_kst 3.845000e-02   p_cons 2.574000e-01   p_joint 5.067500e-02

Outputting figure to mutsig2_images.part000000000140/PTGIS.5_1543_40000_0.03845_0.2574_0.050675.png
                gene_name: PTGIS
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 40 percent done.
PTGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
PTGS1   10000 perm   2 sec   (5300 perm/sec)   p_kst 4.469000e-01   p_cons 2.570000e-02   p_joint 8.740000e-02

Joint ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
Cons ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
KS ci ratio: 3.087774e-02	ci left: 4.392940e-01	ci right 4.531217e-01	k: 8924	n:20000
PTGS1   20000 perm   4 sec   (4719 perm/sec)   p_kst 4.462000e-01   p_cons 3.020000e-02   p_joint 8.485000e-02

Joint ci ratio: 6.538133e-02	ci left: 1.034908e-01	ci right 1.105189e-01	k: 3209	n:30000
Cons ci ratio: 1.250139e-01	ci left: 2.974625e-02	ci right 3.374511e-02	k: 951	n:30000
KS ci ratio: 2.514777e-02	ci left: 4.418287e-01	ci right 4.531148e-01	k: 13424	n:30000
PTGS1   30000 perm   7 sec   (4505 perm/sec)   p_kst 4.474667e-01   p_cons 3.170000e-02   p_joint 1.069667e-01

Joint ci ratio: 5.659986e-02	ci left: 1.040362e-01	ci right 1.101210e-01	k: 4282	n:40000
Cons ci ratio: 1.078858e-01	ci left: 3.022373e-02	ci right 3.369465e-02	k: 1277	n:40000
KS ci ratio: 2.175985e-02	ci left: 4.430182e-01	ci right 4.527894e-01	k: 17916	n:40000
PTGS1   40000 perm   9 sec   (4358 perm/sec)   p_kst 4.479000e-01   p_cons 3.192500e-02   p_joint 1.070500e-01

Joint ci ratio: 4.889161e-02	ci left: 1.111278e-01	ci right 1.167171e-01	k: 5695	n:50000
Cons ci ratio: 9.947834e-02	ci left: 2.861968e-02	ci right 3.163520e-02	k: 1505	n:50000
KS ci ratio: 1.938895e-02	ci left: 4.454126e-01	ci right 4.541533e-01	k: 22489	n:50000
PTGS1   50000 perm   12 sec   (4243 perm/sec)   p_kst 4.497800e-01   p_cons 3.010000e-02   p_joint 1.139000e-01

Outputting figure to mutsig2_images.part000000000140/PTGS1.5_1844_50000_0.44978_0.0301_0.1139.png
                gene_name: PTGS1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 42 percent done.
PTK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
Cons ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
KS ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
PTK7   10000 perm   2 sec   (4900 perm/sec)   p_kst 3.902000e-01   p_cons 6.518000e-01   p_joint 5.184000e-01

Outputting figure to mutsig2_images.part000000000140/PTK7.5_3293_10000_0.3902_0.6518_0.5184.png
                gene_name: PTK7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 43 percent done.
PTN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
PTN   10000 perm   2 sec   (6498 perm/sec)   p_kst 7.469000e-01   p_cons 6.793000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTN.4_523_10000_0.7469_0.6793_1.png
                gene_name: PTN
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
PTPN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
PTPN12   10000 perm   2 sec   (5326 perm/sec)   p_kst 1.542000e-01   p_cons 5.462000e-01   p_joint 2.712000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN12.5_2415_10000_0.1542_0.5462_0.2712.png
                gene_name: PTPN12
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
PSTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
Cons ci ratio: 4.960770e-02	ci left: 3.747510e-01	ci right 3.939164e-01	k: 3843	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
PSTK   10000 perm   2 sec   (6539 perm/sec)   p_kst 6.020000e-02   p_cons 3.843000e-01   p_joint 1.989000e-01

Joint ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
Cons ci ratio: 3.503330e-02	ci left: 3.781986e-01	ci right 3.917349e-01	k: 7699	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
PSTK   20000 perm   4 sec   (5701 perm/sec)   p_kst 6.120000e-02   p_cons 3.849500e-01   p_joint 7.995000e-02

Joint ci ratio: 6.910485e-02	ci left: 9.350937e-02	ci right 1.002356e-01	k: 2905	n:30000
Cons ci ratio: 2.857031e-02	ci left: 3.800203e-01	ci right 3.910685e-01	k: 11566	n:30000
KS ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
PSTK   30000 perm   6 sec   (5386 perm/sec)   p_kst 6.143333e-02   p_cons 3.855333e-01   p_joint 9.683333e-02

Outputting figure to mutsig2_images.part000000000140/PSTK.4_1071_30000_0.061433_0.38553_0.096833.png
                gene_name: PSTK
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 48 percent done.
PTGER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
KS ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
PTGER3   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.600000e-03   p_cons 5.879000e-01   p_joint 9.200000e-03

Joint ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
Cons ci ratio: 2.294573e-02	ci left: 5.865042e-01	ci right 6.001687e-01	k: 11867	n:20000
KS ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
PTGER3   20000 perm   4 sec   (5170 perm/sec)   p_kst 5.900000e-03   p_cons 5.933500e-01   p_joint 1.845000e-02

Joint ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
Cons ci ratio: 1.861342e-02	ci left: 5.909227e-01	ci right 6.020587e-01	k: 17895	n:30000
KS ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
PTGER3   30000 perm   6 sec   (4898 perm/sec)   p_kst 5.733333e-03   p_cons 5.965000e-01   p_joint 1.446667e-02

Joint ci ratio: 1.476112e-01	ci left: 1.604487e-02	ci right 1.862589e-02	k: 692	n:40000
Cons ci ratio: 1.660234e-02	ci left: 5.773735e-01	ci right 5.870646e-01	k: 23289	n:40000
KS ci ratio: 2.512206e-01	ci left: 5.290163e-03	ci right 6.832869e-03	k: 241	n:40000
PTGER3   40000 perm   8 sec   (4735 perm/sec)   p_kst 6.025000e-03   p_cons 5.822250e-01   p_joint 1.730000e-02

Joint ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
Cons ci ratio: 1.449490e-02	ci left: 5.896201e-01	ci right 5.982490e-01	k: 29697	n:50000
KS ci ratio: 2.212306e-01	ci left: 5.549659e-03	ci right 6.948597e-03	k: 311	n:50000
PTGER3   50000 perm   11 sec   (4604 perm/sec)   p_kst 6.220000e-03   p_cons 5.939400e-01   p_joint 1.406000e-02

Joint ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
Cons ci ratio: 1.320890e-02	ci left: 5.908423e-01	ci right 5.987152e-01	k: 35687	n:60000
KS ci ratio: 2.039939e-01	ci left: 5.492623e-03	ci right 6.755865e-03	k: 366	n:60000
PTGER3   60000 perm   13 sec   (4468 perm/sec)   p_kst 6.100000e-03   p_cons 5.947833e-01   p_joint 1.198333e-02

Joint ci ratio: 1.240188e-01	ci left: 1.319807e-02	ci right 1.495683e-02	k: 984	n:70000
Cons ci ratio: 1.224499e-02	ci left: 5.905084e-01	ci right 5.977980e-01	k: 41591	n:70000
KS ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
PTGER3   70000 perm   16 sec   (4370 perm/sec)   p_kst 6.128571e-03   p_cons 5.941571e-01   p_joint 1.405714e-02

Joint ci ratio: 1.263561e-01	ci left: 1.113586e-02	ci right 1.264985e-02	k: 950	n:80000
Cons ci ratio: 1.145849e-02	ci left: 5.905624e-01	ci right 5.973808e-01	k: 47518	n:80000
KS ci ratio: 1.763623e-01	ci left: 5.596065e-03	ci right 6.690214e-03	k: 490	n:80000
PTGER3   80000 perm   19 sec   (4281 perm/sec)   p_kst 6.125000e-03   p_cons 5.939750e-01   p_joint 1.187500e-02

Joint ci ratio: 1.210848e-01	ci left: 1.081365e-02	ci right 1.221810e-02	k: 1035	n:90000
Cons ci ratio: 1.080934e-02	ci left: 5.904827e-01	ci right 5.969112e-01	k: 53433	n:90000
KS ci ratio: 1.664847e-01	ci left: 5.612365e-03	ci right 6.642080e-03	k: 550	n:90000
PTGER3   90000 perm   21 sec   (4199 perm/sec)   p_kst 6.111111e-03   p_cons 5.937000e-01   p_joint 1.150000e-02

Joint ci ratio: 1.159517e-01	ci left: 1.064437e-02	ci right 1.196420e-02	k: 1129	n:100000
Cons ci ratio: 1.025381e-02	ci left: 5.906883e-01	ci right 5.967863e-01	k: 59374	n:100000
KS ci ratio: 1.603604e-01	ci left: 5.463511e-03	ci right 6.425485e-03	k: 593	n:100000
PTGER3   100000 perm   24 sec   (4120 perm/sec)   p_kst 5.930000e-03   p_cons 5.937400e-01   p_joint 1.129000e-02

Joint ci ratio: 1.102867e-01	ci left: 1.072795e-02	ci right 1.198892e-02	k: 1248	n:110000
Cons ci ratio: 9.767680e-03	ci left: 5.912730e-01	ci right 5.970857e-01	k: 65360	n:110000
KS ci ratio: 1.532994e-01	ci left: 5.455944e-03	ci right 6.370402e-03	k: 649	n:110000
PTGER3   110000 perm   27 sec   (4046 perm/sec)   p_kst 5.900000e-03   p_cons 5.941818e-01   p_joint 1.134545e-02

Joint ci ratio: 9.598515e-02	ci left: 1.304991e-02	ci right 1.437374e-02	k: 1644	n:120000
Cons ci ratio: 9.356830e-03	ci left: 5.911400e-01	ci right 5.967055e-01	k: 71271	n:120000
KS ci ratio: 1.540540e-01	ci left: 4.953105e-03	ci right 5.787740e-03	k: 643	n:120000
PTGER3   120000 perm   30 sec   (3974 perm/sec)   p_kst 5.358333e-03   p_cons 5.939250e-01   p_joint 1.370000e-02

Joint ci ratio: 9.428149e-02	ci left: 1.250397e-02	ci right 1.374865e-02	k: 1705	n:130000
Cons ci ratio: 9.197461e-03	ci left: 5.801755e-01	ci right 5.855439e-01	k: 75772	n:130000
KS ci ratio: 1.495995e-01	ci left: 4.860682e-03	ci right 5.653940e-03	k: 682	n:130000
PTGER3   130000 perm   33 sec   (3907 perm/sec)   p_kst 5.246154e-03   p_cons 5.828615e-01   p_joint 1.311538e-02

Joint ci ratio: 8.236533e-02	ci left: 1.526522e-02	ci right 1.658351e-02	k: 2228	n:140000
Cons ci ratio: 8.870924e-03	ci left: 5.798329e-01	ci right 5.850066e-01	k: 81539	n:140000
KS ci ratio: 1.444085e-01	ci left: 4.857499e-03	ci right 5.620357e-03	k: 732	n:140000
PTGER3   140000 perm   36 sec   (3843 perm/sec)   p_kst 5.228571e-03   p_cons 5.824214e-01   p_joint 1.591429e-02

Joint ci ratio: 7.993402e-02	ci left: 1.514883e-02	ci right 1.641665e-02	k: 2366	n:150000
Cons ci ratio: 8.574856e-03	ci left: 5.796525e-01	ci right 5.846510e-01	k: 87323	n:150000
KS ci ratio: 1.405370e-01	ci left: 4.797245e-03	ci right 5.528750e-03	k: 773	n:150000
PTGER3   150000 perm   40 sec   (3780 perm/sec)   p_kst 5.153333e-03   p_cons 5.821533e-01   p_joint 1.577333e-02

Joint ci ratio: 7.714471e-02	ci left: 1.526821e-02	ci right 1.649942e-02	k: 2540	n:160000
Cons ci ratio: 8.290050e-03	ci left: 5.804668e-01	ci right 5.853052e-01	k: 93262	n:160000
KS ci ratio: 1.348969e-01	ci left: 4.895725e-03	ci right 5.609883e-03	k: 839	n:160000
PTGER3   160000 perm   43 sec   (3720 perm/sec)   p_kst 5.243750e-03   p_cons 5.828875e-01   p_joint 1.587500e-02

Joint ci ratio: 7.493751e-02	ci left: 1.524719e-02	ci right 1.643999e-02	k: 2692	n:170000
Cons ci ratio: 8.043689e-03	ci left: 5.804693e-01	ci right 5.851631e-01	k: 99079	n:170000
KS ci ratio: 1.311280e-01	ci left: 4.886384e-03	ci right 5.577713e-03	k: 888	n:170000
PTGER3   170000 perm   46 sec   (3661 perm/sec)   p_kst 5.223529e-03   p_cons 5.828176e-01   p_joint 1.583529e-02

Joint ci ratio: 7.311871e-02	ci left: 1.514166e-02	ci right 1.629624e-02	k: 2828	n:180000
Cons ci ratio: 7.817526e-03	ci left: 5.805068e-01	ci right 5.850683e-01	k: 104902	n:180000
KS ci ratio: 1.276583e-01	ci left: 4.878328e-03	ci right 5.548871e-03	k: 937	n:180000
PTGER3   180000 perm   50 sec   (3606 perm/sec)   p_kst 5.205556e-03   p_cons 5.827889e-01   p_joint 1.571111e-02

Joint ci ratio: 6.798986e-02	ci left: 1.660978e-02	ci right 1.778396e-02	k: 3266	n:190000
Cons ci ratio: 7.600041e-03	ci left: 5.811425e-01	ci right 5.855813e-01	k: 110839	n:190000
KS ci ratio: 1.240716e-01	ci left: 4.901938e-03	ci right 5.555403e-03	k: 992	n:190000
PTGER3   190000 perm   54 sec   (3550 perm/sec)   p_kst 5.221053e-03   p_cons 5.833632e-01   p_joint 1.718947e-02

Joint ci ratio: 6.756895e-02	ci left: 1.599047e-02	ci right 1.711360e-02	k: 3309	n:200000
Cons ci ratio: 7.409712e-03	ci left: 5.810606e-01	ci right 5.853870e-01	k: 116645	n:200000
KS ci ratio: 1.213546e-01	ci left: 4.874930e-03	ci right 5.509542e-03	k: 1037	n:200000
PTGER3   200000 perm   57 sec   (3495 perm/sec)   p_kst 5.185000e-03   p_cons 5.832250e-01   p_joint 1.654500e-02

Joint ci ratio: 6.646262e-02	ci left: 1.575335e-02	ci right 1.684101e-02	k: 3421	n:210000
Cons ci ratio: 7.227900e-03	ci left: 5.813308e-01	ci right 5.855526e-01	k: 122523	n:210000
KS ci ratio: 1.180983e-01	ci left: 4.910715e-03	ci right 5.531634e-03	k: 1095	n:210000
PTGER3   210000 perm   61 sec   (3446 perm/sec)   p_kst 5.214286e-03   p_cons 5.834429e-01   p_joint 1.629048e-02

Joint ci ratio: 6.560706e-02	ci left: 1.544402e-02	ci right 1.649606e-02	k: 3512	n:220000
Cons ci ratio: 7.061023e-03	ci left: 5.814276e-01	ci right 5.855521e-01	k: 128368	n:220000
KS ci ratio: 1.163128e-01	ci left: 4.837505e-03	ci right 5.439284e-03	k: 1129	n:220000
PTGER3   220000 perm   65 sec   (3397 perm/sec)   p_kst 5.131818e-03   p_cons 5.834909e-01   p_joint 1.596364e-02

Joint ci ratio: 6.451109e-02	ci left: 1.529003e-02	ci right 1.631353e-02	k: 3633	n:230000
Cons ci ratio: 6.905689e-03	ci left: 5.814821e-01	ci right 5.855158e-01	k: 134205	n:230000
KS ci ratio: 1.138223e-01	ci left: 4.838313e-03	ci right 5.426439e-03	k: 1179	n:230000
PTGER3   230000 perm   69 sec   (3346 perm/sec)   p_kst 5.126087e-03   p_cons 5.835000e-01   p_joint 1.579565e-02

Joint ci ratio: 6.760157e-02	ci left: 1.334936e-02	ci right 1.428744e-02	k: 3315	n:240000
Cons ci ratio: 6.759538e-03	ci left: 5.815788e-01	ci right 5.855275e-01	k: 140053	n:240000
KS ci ratio: 1.113033e-01	ci left: 4.855384e-03	ci right 5.431667e-03	k: 1233	n:240000
PTGER3   240000 perm   73 sec   (3296 perm/sec)   p_kst 5.137500e-03   p_cons 5.835542e-01   p_joint 1.381250e-02

Joint ci ratio: 6.614034e-02	ci left: 1.339749e-02	ci right 1.431783e-02	k: 3463	n:250000
Cons ci ratio: 6.625997e-03	ci left: 5.813965e-01	ci right 5.852656e-01	k: 145833	n:250000
KS ci ratio: 1.092434e-01	ci left: 4.843982e-03	ci right 5.407585e-03	k: 1280	n:250000
PTGER3   250000 perm   77 sec   (3252 perm/sec)   p_kst 5.120000e-03   p_cons 5.833320e-01   p_joint 1.385200e-02

Joint ci ratio: 6.493422e-02	ci left: 1.337401e-02	ci right 1.427534e-02	k: 3593	n:260000
Cons ci ratio: 6.494515e-03	ci left: 5.816446e-01	ci right 5.854382e-01	k: 151721	n:260000
KS ci ratio: 1.068498e-01	ci left: 4.874727e-03	ci right 5.428700e-03	k: 1338	n:260000
PTGER3   260000 perm   81 sec   (3208 perm/sec)   p_kst 5.146154e-03   p_cons 5.835423e-01   p_joint 1.381923e-02

Joint ci ratio: 6.524610e-02	ci left: 1.276195e-02	ci right 1.362632e-02	k: 3561	n:270000
Cons ci ratio: 6.372939e-03	ci left: 5.816934e-01	ci right 5.854160e-01	k: 157560	n:270000
KS ci ratio: 1.052526e-01	ci left: 4.842001e-03	ci right 5.383520e-03	k: 1379	n:270000
PTGER3   270000 perm   85 sec   (3166 perm/sec)   p_kst 5.107407e-03   p_cons 5.835556e-01   p_joint 1.318889e-02

Joint ci ratio: 6.236389e-02	ci left: 1.348015e-02	ci right 1.435138e-02	k: 3895	n:280000
Cons ci ratio: 6.258312e-03	ci left: 5.817107e-01	ci right 5.853662e-01	k: 163391	n:280000
KS ci ratio: 1.036151e-01	ci left: 4.822108e-03	ci right 5.352501e-03	k: 1423	n:280000
PTGER3   280000 perm   90 sec   (3124 perm/sec)   p_kst 5.082143e-03   p_cons 5.835393e-01   p_joint 1.391071e-02

Joint ci ratio: 6.463618e-02	ci left: 1.211915e-02	ci right 1.293202e-02	k: 3631	n:290000
Cons ci ratio: 6.145251e-03	ci left: 5.820759e-01	ci right 5.856673e-01	k: 169323	n:290000
KS ci ratio: 1.015661e-01	ci left: 4.850701e-03	ci right 5.373058e-03	k: 1481	n:290000
PTGER3   290000 perm   94 sec   (3084 perm/sec)   p_kst 5.106897e-03   p_cons 5.838724e-01   p_joint 1.252069e-02

Joint ci ratio: 6.399315e-02	ci left: 1.195784e-02	ci right 1.275162e-02	k: 3705	n:300000
Cons ci ratio: 6.043692e-03	ci left: 5.819669e-01	ci right 5.854981e-01	k: 175120	n:300000
KS ci ratio: 9.966650e-02	ci left: 4.874232e-03	ci right 5.388732e-03	k: 1538	n:300000
PTGER3   300000 perm   99 sec   (3044 perm/sec)   p_kst 5.126667e-03   p_cons 5.837333e-01   p_joint 1.235000e-02

Outputting figure to mutsig2_images.part000000000140/PTGER3.4_1492_300000_0.0051267_0.58373_0.01235.png
                gene_name: PTGER3
               theta_stop: 0.100 
                    nperm: 300000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0049 
       ci_ks_bounds_right: 0.0054 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 50 percent done.
PTGS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
KS ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
PTGS2   10000 perm   2 sec   (5525 perm/sec)   p_kst 5.686000e-01   p_cons 2.019000e-01   p_joint 5.632000e-01

Outputting figure to mutsig2_images.part000000000140/PTGS2.4_1855_10000_0.5686_0.2019_0.5632.png
                gene_name: PTGS2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 52 percent done.
PTH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 2.431120e-02	ci left: 7.133072e-01	ci right 7.309632e-01	k: 7222	n:10000
KS ci ratio: 6.710973e-01	ci left: 2.272624e-03	ci right 4.631334e-03	k: 33	n:10000
PTH   10000 perm   2 sec   (6488 perm/sec)   p_kst 3.300000e-03   p_cons 7.222000e-01   p_joint 1.170000e-02

Joint ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
Cons ci ratio: 1.713313e-02	ci left: 7.172945e-01	ci right 7.297405e-01	k: 14471	n:20000
KS ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
PTH   20000 perm   3 sec   (5726 perm/sec)   p_kst 3.700000e-03   p_cons 7.235500e-01   p_joint 1.845000e-02

Joint ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
Cons ci ratio: 1.334883e-02	ci left: 7.369084e-01	ci right 7.468448e-01	k: 22257	n:30000
KS ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
PTH   30000 perm   6 sec   (5447 perm/sec)   p_kst 3.866667e-03   p_cons 7.419000e-01   p_joint 1.126667e-02

Joint ci ratio: 1.372859e-01	ci left: 1.860214e-02	ci right 2.136817e-02	k: 798	n:40000
Cons ci ratio: 1.155894e-02	ci left: 7.376320e-01	ci right 7.462328e-01	k: 29678	n:40000
KS ci ratio: 3.173454e-01	ci left: 3.197791e-03	ci right 4.425976e-03	k: 151	n:40000
PTH   40000 perm   8 sec   (5244 perm/sec)   p_kst 3.775000e-03   p_cons 7.419500e-01   p_joint 1.995000e-02

Joint ci ratio: 1.052778e-01	ci left: 2.555784e-02	ci right 2.841743e-02	k: 1348	n:50000
Cons ci ratio: 1.028600e-02	ci left: 7.400501e-01	ci right 7.477216e-01	k: 37195	n:50000
KS ci ratio: 2.916503e-01	ci left: 3.075488e-03	ci right 4.143422e-03	k: 179	n:50000
PTH   50000 perm   10 sec   (5092 perm/sec)   p_kst 3.580000e-03   p_cons 7.439000e-01   p_joint 2.696000e-02

Joint ci ratio: 1.041856e-01	ci left: 2.184781e-02	ci right 2.426529e-02	k: 1382	n:60000
Cons ci ratio: 9.389800e-03	ci left: 7.403874e-01	ci right 7.473890e-01	k: 44634	n:60000
KS ci ratio: 2.668602e-01	ci left: 3.105472e-03	ci right 4.076854e-03	k: 214	n:60000
PTH   60000 perm   12 sec   (4964 perm/sec)   p_kst 3.566667e-03   p_cons 7.439000e-01   p_joint 2.303333e-02

Joint ci ratio: 9.898261e-02	ci left: 2.082850e-02	ci right 2.301138e-02	k: 1533	n:70000
Cons ci ratio: 8.715434e-03	ci left: 7.396740e-01	ci right 7.461630e-01	k: 52005	n:70000
KS ci ratio: 2.510295e-01	ci left: 3.035877e-03	ci right 3.920356e-03	k: 242	n:70000
PTH   70000 perm   14 sec   (4838 perm/sec)   p_kst 3.457143e-03   p_cons 7.429286e-01   p_joint 2.190000e-02

Joint ci ratio: 8.831011e-02	ci left: 2.297494e-02	ci right 2.510977e-02	k: 1922	n:80000
Cons ci ratio: 8.147819e-03	ci left: 7.401075e-01	ci right 7.461749e-01	k: 59452	n:80000
KS ci ratio: 2.258952e-01	ci left: 3.326488e-03	ci right 4.185118e-03	k: 299	n:80000
PTH   80000 perm   17 sec   (4727 perm/sec)   p_kst 3.737500e-03   p_cons 7.431500e-01   p_joint 2.402500e-02

Joint ci ratio: 1.100565e-01	ci left: 1.313445e-02	ci right 1.467489e-02	k: 1250	n:90000
Cons ci ratio: 7.993241e-03	ci left: 7.247678e-01	ci right 7.305953e-01	k: 65492	n:90000
KS ci ratio: 2.106397e-01	ci left: 3.429593e-03	ci right 4.247343e-03	k: 344	n:90000
PTH   90000 perm   20 sec   (4601 perm/sec)   p_kst 3.822222e-03   p_cons 7.276889e-01   p_joint 1.388889e-02

Joint ci ratio: 1.091661e-01	ci left: 1.203460e-02	ci right 1.343388e-02	k: 1272	n:100000
Cons ci ratio: 7.589159e-03	ci left: 7.245984e-01	ci right 7.301284e-01	k: 72737	n:100000
KS ci ratio: 2.007083e-01	ci left: 3.418613e-03	ci right 4.190607e-03	k: 379	n:100000
PTH   100000 perm   22 sec   (4507 perm/sec)   p_kst 3.790000e-03   p_cons 7.273700e-01   p_joint 1.272000e-02

Joint ci ratio: 1.107812e-01	ci left: 1.063068e-02	ci right 1.188619e-02	k: 1237	n:110000
Cons ci ratio: 7.232781e-03	ci left: 7.249039e-01	ci right 7.301750e-01	k: 80030	n:110000
KS ci ratio: 1.913680e-01	ci left: 3.436339e-03	ci right 4.172022e-03	k: 417	n:110000
PTH   110000 perm   25 sec   (4420 perm/sec)   p_kst 3.790909e-03   p_cons 7.275455e-01   p_joint 1.124545e-02

Joint ci ratio: 1.124511e-01	ci left: 9.460944e-03	ci right 1.059626e-02	k: 1202	n:120000
Cons ci ratio: 6.925365e-03	ci left: 7.249879e-01	ci right 7.300344e-01	k: 87302	n:120000
KS ci ratio: 1.854802e-01	ci left: 3.364353e-03	ci right 4.059970e-03	k: 444	n:120000
PTH   120000 perm   28 sec   (4335 perm/sec)   p_kst 3.700000e-03   p_cons 7.275167e-01   p_joint 1.001667e-02

Joint ci ratio: 1.144309e-01	ci left: 8.433960e-03	ci right 9.465046e-03	k: 1162	n:130000
Cons ci ratio: 6.656022e-03	ci left: 7.249473e-01	ci right 7.297964e-01	k: 94559	n:130000
KS ci ratio: 1.797223e-01	ci left: 3.318431e-03	ci right 3.980936e-03	k: 473	n:130000
PTH   130000 perm   31 sec   (4251 perm/sec)   p_kst 3.638462e-03   p_cons 7.273769e-01   p_joint 8.938462e-03

Joint ci ratio: 1.234552e-01	ci left: 6.708391e-03	ci right 7.597920e-03	k: 1000	n:140000
Cons ci ratio: 6.411568e-03	ci left: 7.251809e-01	ci right 7.298525e-01	k: 101853	n:140000
KS ci ratio: 1.751697e-01	ci left: 3.252031e-03	ci right 3.883091e-03	k: 498	n:140000
PTH   140000 perm   34 sec   (4169 perm/sec)   p_kst 3.557143e-03   p_cons 7.275214e-01   p_joint 7.142857e-03

Joint ci ratio: 1.316793e-01	ci left: 5.486435e-03	ci right 6.266184e-03	k: 880	n:150000
Cons ci ratio: 6.193145e-03	ci left: 7.253260e-01	ci right 7.298386e-01	k: 109138	n:150000
KS ci ratio: 1.690149e-01	ci left: 3.271276e-03	ci right 3.881494e-03	k: 535	n:150000
PTH   150000 perm   37 sec   (4093 perm/sec)   p_kst 3.566667e-03   p_cons 7.275867e-01   p_joint 5.866667e-03

Joint ci ratio: 1.276164e-01	ci left: 5.488230e-03	ci right 6.242345e-03	k: 937	n:160000
Cons ci ratio: 5.989574e-03	ci left: 7.258562e-01	ci right 7.302230e-01	k: 116487	n:160000
KS ci ratio: 1.636097e-01	ci left: 3.282459e-03	ci right 3.873255e-03	k: 571	n:160000
PTH   160000 perm   40 sec   (4022 perm/sec)   p_kst 3.568750e-03   p_cons 7.280437e-01   p_joint 5.856250e-03

Joint ci ratio: 1.115038e-01	ci left: 6.815017e-03	ci right 7.625454e-03	k: 1226	n:170000
Cons ci ratio: 5.813023e-03	ci left: 7.257658e-01	ci right 7.300029e-01	k: 123741	n:170000
KS ci ratio: 1.594837e-01	ci left: 3.258707e-03	ci right 3.829019e-03	k: 601	n:170000
PTH   170000 perm   43 sec   (3944 perm/sec)   p_kst 3.535294e-03   p_cons 7.278882e-01   p_joint 7.211765e-03

Joint ci ratio: 1.126409e-01	ci left: 6.306716e-03	ci right 7.064859e-03	k: 1202	n:180000
Cons ci ratio: 5.646144e-03	ci left: 7.260437e-01	ci right 7.301601e-01	k: 131059	n:180000
KS ci ratio: 1.550406e-01	ci left: 3.264461e-03	ci right 3.818385e-03	k: 636	n:180000
PTH   180000 perm   46 sec   (3880 perm/sec)   p_kst 3.533333e-03   p_cons 7.281056e-01   p_joint 6.677778e-03

Joint ci ratio: 7.612718e-02	ci left: 1.323892e-02	ci right 1.429178e-02	k: 2614	n:190000
Cons ci ratio: 5.496069e-03	ci left: 7.260616e-01	ci right 7.300683e-01	k: 138333	n:190000
KS ci ratio: 1.516301e-01	ci left: 3.239420e-03	ci right 3.775905e-03	k: 665	n:190000
PTH   190000 perm   50 sec   (3821 perm/sec)   p_kst 3.500000e-03   p_cons 7.280684e-01   p_joint 1.375789e-02

Joint ci ratio: 7.278660e-02	ci left: 1.377440e-02	ci right 1.481974e-02	k: 2858	n:200000
Cons ci ratio: 5.355397e-03	ci left: 7.262244e-01	ci right 7.301290e-01	k: 145636	n:200000
KS ci ratio: 1.482213e-01	ci left: 3.226633e-03	ci right 3.747922e-03	k: 696	n:200000
PTH   200000 perm   53 sec   (3762 perm/sec)   p_kst 3.480000e-03   p_cons 7.281800e-01   p_joint 1.429000e-02

Joint ci ratio: 7.363866e-02	ci left: 1.282374e-02	ci right 1.380881e-02	k: 2795	n:210000
Cons ci ratio: 5.227011e-03	ci left: 7.262201e-01	ci right 7.300307e-01	k: 152907	n:210000
KS ci ratio: 1.449326e-01	ci left: 3.219775e-03	ci right 3.727416e-03	k: 728	n:210000
PTH   210000 perm   57 sec   (3703 perm/sec)   p_kst 3.466667e-03   p_cons 7.281286e-01   p_joint 1.330952e-02

Joint ci ratio: 6.484223e-02	ci left: 1.581076e-02	ci right 1.687476e-02	k: 3594	n:220000
Cons ci ratio: 5.107086e-03	ci left: 7.262446e-01	ci right 7.299676e-01	k: 160184	n:220000
KS ci ratio: 1.425128e-01	ci left: 3.182967e-03	ci right 3.675714e-03	k: 753	n:220000
PTH   220000 perm   60 sec   (3639 perm/sec)   p_kst 3.422727e-03   p_cons 7.281091e-01   p_joint 1.633636e-02

Joint ci ratio: 5.612418e-02	ci left: 2.018632e-02	ci right 2.135624e-02	k: 4776	n:230000
Cons ci ratio: 4.994944e-03	ci left: 7.262766e-01	ci right 7.299177e-01	k: 167463	n:230000
KS ci ratio: 1.387873e-01	ci left: 3.216570e-03	ci right 3.700425e-03	k: 794	n:230000
PTH   230000 perm   64 sec   (3580 perm/sec)   p_kst 3.452174e-03   p_cons 7.281000e-01   p_joint 2.076522e-02

Joint ci ratio: 5.611303e-02	ci left: 1.936964e-02	ci right 2.049199e-02	k: 4782	n:240000
Cons ci ratio: 4.696094e-03	ci left: 7.420527e-01	ci right 7.455498e-01	k: 178513	n:240000
KS ci ratio: 1.357474e-01	ci left: 3.227396e-03	ci right 3.701387e-03	k: 830	n:240000
PTH   240000 perm   68 sec   (3526 perm/sec)   p_kst 3.458333e-03   p_cons 7.438042e-01   p_joint 1.992500e-02

Joint ci ratio: 5.540226e-02	ci left: 1.908781e-02	ci right 2.017937e-02	k: 4907	n:250000
Cons ci ratio: 4.596870e-03	ci left: 7.424488e-01	ci right 7.458735e-01	k: 186041	n:250000
KS ci ratio: 1.326687e-01	ci left: 3.249065e-03	ci right 3.714563e-03	k: 869	n:250000
PTH   250000 perm   72 sec   (3475 perm/sec)   p_kst 3.476000e-03   p_cons 7.441640e-01   p_joint 1.962800e-02

Joint ci ratio: 5.551590e-02	ci left: 1.829277e-02	ci right 1.934107e-02	k: 4891	n:260000
Cons ci ratio: 4.507175e-03	ci left: 7.425183e-01	ci right 7.458763e-01	k: 193492	n:260000
KS ci ratio: 1.301502e-01	ci left: 3.250572e-03	ci right 3.706761e-03	k: 903	n:260000
PTH   260000 perm   76 sec   (3414 perm/sec)   p_kst 3.473077e-03   p_cons 7.442000e-01   p_joint 1.881154e-02

Joint ci ratio: 5.543185e-02	ci left: 1.768085e-02	ci right 1.869250e-02	k: 4909	n:270000
Cons ci ratio: 4.421330e-03	ci left: 7.426871e-01	ci right 7.459817e-01	k: 200971	n:270000
KS ci ratio: 1.285282e-01	ci left: 3.212605e-03	ci right 3.657419e-03	k: 926	n:270000
PTH   270000 perm   80 sec   (3363 perm/sec)   p_kst 3.429630e-03   p_cons 7.443370e-01   p_joint 1.818148e-02

Joint ci ratio: 5.642295e-02	ci left: 1.646805e-02	ci right 1.742770e-02	k: 4744	n:280000
Cons ci ratio: 4.342245e-03	ci left: 7.426655e-01	ci right 7.459009e-01	k: 208400	n:280000
KS ci ratio: 1.262342e-01	ci left: 3.215428e-03	ci right 3.652092e-03	k: 960	n:280000
PTH   280000 perm   84 sec   (3316 perm/sec)   p_kst 3.428571e-03   p_cons 7.442857e-01   p_joint 1.694286e-02

Joint ci ratio: 5.660367e-02	ci left: 1.580825e-02	ci right 1.673249e-02	k: 4717	n:290000
Cons ci ratio: 4.265635e-03	ci left: 7.427910e-01	ci right 7.459696e-01	k: 215871	n:290000
KS ci ratio: 1.232534e-01	ci left: 3.261568e-03	ci right 3.693276e-03	k: 1007	n:290000
PTH   290000 perm   89 sec   (3270 perm/sec)   p_kst 3.472414e-03   p_cons 7.443828e-01   p_joint 1.626552e-02

Joint ci ratio: 5.601321e-02	ci left: 1.561319e-02	ci right 1.651620e-02	k: 4818	n:300000
Cons ci ratio: 4.189708e-03	ci left: 7.432025e-01	ci right 7.463261e-01	k: 223430	n:300000
KS ci ratio: 1.212845e-01	ci left: 3.259485e-03	ci right 3.683530e-03	k: 1040	n:300000
PTH   300000 perm   93 sec   (3225 perm/sec)   p_kst 3.466667e-03   p_cons 7.447667e-01   p_joint 1.606000e-02

Joint ci ratio: 5.665215e-02	ci left: 1.477860e-02	ci right 1.564340e-02	k: 4714	n:310000
Cons ci ratio: 4.121531e-03	ci left: 7.432323e-01	ci right 7.463051e-01	k: 230879	n:310000
KS ci ratio: 1.195747e-01	ci left: 3.248198e-03	ci right 3.664396e-03	k: 1070	n:310000
PTH   310000 perm   97 sec   (3180 perm/sec)   p_kst 3.451613e-03   p_cons 7.447710e-01   p_joint 1.520645e-02

Joint ci ratio: 5.703528e-02	ci left: 1.413180e-02	ci right 1.496453e-02	k: 4654	n:320000
Cons ci ratio: 4.056011e-03	ci left: 7.433139e-01	ci right 7.463380e-01	k: 238345	n:320000
KS ci ratio: 1.174544e-01	ci left: 3.264955e-03	ci right 3.675368e-03	k: 1109	n:320000
PTH   320000 perm   102 sec   (3136 perm/sec)   p_kst 3.465625e-03   p_cons 7.448281e-01   p_joint 1.454375e-02

Joint ci ratio: 5.687478e-02	ci left: 1.378713e-02	ci right 1.459719e-02	k: 4682	n:330000
Cons ci ratio: 3.994316e-03	ci left: 7.433149e-01	ci right 7.462929e-01	k: 245786	n:330000
KS ci ratio: 1.159505e-01	ci left: 3.251329e-03	ci right 3.654438e-03	k: 1138	n:330000
PTH   330000 perm   107 sec   (3094 perm/sec)   p_kst 3.448485e-03   p_cons 7.448061e-01   p_joint 1.418788e-02

Joint ci ratio: 5.603161e-02	ci left: 1.379338e-02	ci right 1.459140e-02	k: 4824	n:340000
Cons ci ratio: 3.934470e-03	ci left: 7.434017e-01	ci right 7.463353e-01	k: 253256	n:340000
KS ci ratio: 1.139172e-01	ci left: 3.272826e-03	ci right 3.671005e-03	k: 1179	n:340000
PTH   340000 perm   111 sec   (3054 perm/sec)   p_kst 3.467647e-03   p_cons 7.448706e-01   p_joint 1.418824e-02

Joint ci ratio: 5.505086e-02	ci left: 1.388672e-02	ci right 1.467564e-02	k: 4997	n:350000
Cons ci ratio: 3.875923e-03	ci left: 7.436127e-01	ci right 7.465033e-01	k: 260771	n:350000
KS ci ratio: 1.119413e-01	ci left: 3.295929e-03	ci right 3.689505e-03	k: 1221	n:350000
PTH   350000 perm   116 sec   (3015 perm/sec)   p_kst 3.488571e-03   p_cons 7.450600e-01   p_joint 1.427714e-02

Joint ci ratio: 5.497834e-02	ci left: 1.354201e-02	ci right 1.431029e-02	k: 5012	n:360000
Cons ci ratio: 3.822343e-03	ci left: 7.435701e-01	ci right 7.464204e-01	k: 268199	n:360000
KS ci ratio: 1.104601e-01	ci left: 3.293492e-03	ci right 3.681234e-03	k: 1254	n:360000
PTH   360000 perm   121 sec   (2976 perm/sec)   p_kst 3.483333e-03   p_cons 7.449972e-01   p_joint 1.392222e-02

Joint ci ratio: 5.441401e-02	ci left: 1.345589e-02	ci right 1.421121e-02	k: 5117	n:370000
Cons ci ratio: 3.772106e-03	ci left: 7.434109e-01	ci right 7.462231e-01	k: 275583	n:370000
KS ci ratio: 1.085718e-01	ci left: 3.320143e-03	ci right 3.703914e-03	k: 1298	n:370000
PTH   370000 perm   126 sec   (2939 perm/sec)   p_kst 3.508108e-03   p_cons 7.448189e-01   p_joint 1.382973e-02

Joint ci ratio: 5.449425e-02	ci left: 1.306797e-02	ci right 1.380263e-02	k: 5104	n:380000
Cons ci ratio: 3.722791e-03	ci left: 7.433632e-01	ci right 7.461383e-01	k: 283006	n:380000
KS ci ratio: 1.070576e-01	ci left: 3.327514e-03	ci right 3.706435e-03	k: 1335	n:380000
PTH   380000 perm   131 sec   (2903 perm/sec)   p_kst 3.513158e-03   p_cons 7.447526e-01   p_joint 1.343158e-02

Joint ci ratio: 5.437440e-02	ci left: 1.279355e-02	ci right 1.351115e-02	k: 5128	n:390000
Cons ci ratio: 3.674766e-03	ci left: 7.433798e-01	ci right 7.461191e-01	k: 290453	n:390000
KS ci ratio: 1.056823e-01	ci left: 3.329549e-03	ci right 3.703528e-03	k: 1370	n:390000
PTH   390000 perm   136 sec   (2868 perm/sec)   p_kst 3.512821e-03   p_cons 7.447513e-01   p_joint 1.314872e-02

Joint ci ratio: 5.356937e-02	ci left: 1.285599e-02	ci right 1.356608e-02	k: 5283	n:400000
Cons ci ratio: 3.628887e-03	ci left: 7.433608e-01	ci right 7.460657e-01	k: 297886	n:400000
KS ci ratio: 1.081693e-01	ci left: 3.095435e-03	ci right 3.451821e-03	k: 1308	n:400000
PTH   400000 perm   141 sec   (2833 perm/sec)   p_kst 3.270000e-03   p_cons 7.447150e-01   p_joint 1.320750e-02

Joint ci ratio: 5.566429e-02	ci left: 1.161842e-02	ci right 1.228606e-02	k: 4899	n:410000
Cons ci ratio: 3.584500e-03	ci left: 7.433624e-01	ci right 7.460342e-01	k: 305327	n:410000
KS ci ratio: 1.063944e-01	ci left: 3.124377e-03	ci right 3.477822e-03	k: 1352	n:410000
PTH   410000 perm   147 sec   (2798 perm/sec)   p_kst 3.297561e-03   p_cons 7.447000e-01   p_joint 1.194878e-02

Joint ci ratio: 5.599697e-02	ci left: 1.121026e-02	ci right 1.185841e-02	k: 4843	n:420000
Cons ci ratio: 3.542236e-03	ci left: 7.433069e-01	ci right 7.459469e-01	k: 312744	n:420000
KS ci ratio: 1.056183e-01	ci left: 3.096341e-03	ci right 3.443901e-03	k: 1372	n:420000
PTH   420000 perm   152 sec   (2764 perm/sec)   p_kst 3.266667e-03   p_cons 7.446286e-01   p_joint 1.153095e-02

Joint ci ratio: 5.538911e-02	ci left: 1.119492e-02	ci right 1.183494e-02	k: 4950	n:430000
Cons ci ratio: 3.500340e-03	ci left: 7.433730e-01	ci right 7.459819e-01	k: 320212	n:430000
KS ci ratio: 1.047835e-01	ci left: 3.074148e-03	ci right 3.416321e-03	k: 1394	n:430000
PTH   430000 perm   157 sec   (2731 perm/sec)   p_kst 3.241860e-03   p_cons 7.446791e-01   p_joint 1.151163e-02

Joint ci ratio: 4.988691e-02	ci left: 1.349328e-02	ci right 1.418587e-02	k: 6088	n:440000
Cons ci ratio: 3.459441e-03	ci left: 7.434863e-01	ci right 7.460650e-01	k: 327702	n:440000
KS ci ratio: 1.038579e-01	ci left: 3.059615e-03	ci right 3.396979e-03	k: 1419	n:440000
PTH   440000 perm   163 sec   (2700 perm/sec)   p_kst 3.225000e-03   p_cons 7.447773e-01   p_joint 1.383636e-02

Joint ci ratio: 5.073320e-02	ci left: 1.276104e-02	ci right 1.342748e-02	k: 5891	n:450000
Cons ci ratio: 3.420283e-03	ci left: 7.435569e-01	ci right 7.461066e-01	k: 335175	n:450000
KS ci ratio: 1.027071e-01	ci left: 3.060898e-03	ci right 3.394438e-03	k: 1451	n:450000
PTH   450000 perm   169 sec   (2670 perm/sec)   p_kst 3.224444e-03   p_cons 7.448333e-01   p_joint 1.309111e-02

Joint ci ratio: 5.028429e-02	ci left: 1.271114e-02	ci right 1.336893e-02	k: 5997	n:460000
Cons ci ratio: 3.381767e-03	ci left: 7.436986e-01	ci right 7.462200e-01	k: 342682	n:460000
KS ci ratio: 1.016281e-01	ci left: 3.060026e-03	ci right 3.389759e-03	k: 1482	n:460000
PTH   460000 perm   174 sec   (2640 perm/sec)   p_kst 3.221739e-03   p_cons 7.449609e-01   p_joint 1.303696e-02

Joint ci ratio: 5.295774e-02	ci left: 1.121813e-02	ci right 1.183046e-02	k: 5415	n:470000
Cons ci ratio: 3.346095e-03	ci left: 7.436554e-01	ci right 7.461500e-01	k: 350105	n:470000
KS ci ratio: 1.005158e-01	ci left: 3.063357e-03	ci right 3.389623e-03	k: 1515	n:470000
PTH   470000 perm   180 sec   (2611 perm/sec)   p_kst 3.223404e-03   p_cons 7.449043e-01   p_joint 1.152128e-02

Joint ci ratio: 5.561599e-02	ci left: 9.958760e-03	ci right 1.053051e-02	k: 4916	n:480000
Cons ci ratio: 3.309751e-03	ci left: 7.438187e-01	ci right 7.462867e-01	k: 357626	n:480000
KS ci ratio: 9.937495e-02	ci left: 3.070632e-03	ci right 3.393744e-03	k: 1550	n:480000
PTH   480000 perm   186 sec   (2581 perm/sec)   p_kst 3.229167e-03   p_cons 7.450542e-01   p_joint 1.024167e-02

Outputting figure to mutsig2_images.part000000000140/PTH.4_356_480000_0.0032292_0.74505_0.010242.png
                gene_name: PTH
               theta_stop: 0.099 
                    nperm: 480000 
                     p_ks: 0.0032 
        ci_ks_bounds_left: 0.0031 
       ci_ks_bounds_right: 0.0034 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0100 
    ci_joint_bounds_right: 0.011 

Current progress: 53 percent done.
PTPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
Cons ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
KS ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
PTPDC1   10000 perm   2 sec   (5260 perm/sec)   p_kst 4.209000e-01   p_cons 3.341000e-01   p_joint 4.632000e-01

Outputting figure to mutsig2_images.part000000000140/PTPDC1.4_2543_10000_0.4209_0.3341_0.4632.png
                gene_name: PTPDC1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
PTPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
Cons ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
KS ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
PTPN5   10000 perm   2 sec   (5677 perm/sec)   p_kst 9.615000e-01   p_cons 4.470000e-01   p_joint 8.009000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN5.4_1754_10000_0.9615_0.447_0.8009.png
                gene_name: PTPN5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 57 percent done.
PTPN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
PTPN9   10000 perm   2 sec   (5618 perm/sec)   p_kst 8.217000e-01   p_cons 6.696000e-01   p_joint 9.284000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN9.4_1834_10000_0.8217_0.6696_0.9284.png
                gene_name: PTPN9
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 58 percent done.
PTPRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
PTPRA   10000 perm   2 sec   (5618 perm/sec)   p_kst 2.209000e-01   p_cons 7.490000e-02   p_joint 2.376000e-01

Joint ci ratio: 5.972830e-02	ci left: 1.718809e-01	ci right 1.825131e-01	k: 3543	n:20000
Cons ci ratio: 9.748302e-02	ci left: 7.114225e-02	ci right 7.848193e-02	k: 1495	n:20000
KS ci ratio: 5.208558e-02	ci left: 2.149188e-01	ci right 2.264625e-01	k: 4413	n:20000
PTPRA   20000 perm   4 sec   (4949 perm/sec)   p_kst 2.206500e-01   p_cons 7.475000e-02   p_joint 1.771500e-01

Outputting figure to mutsig2_images.part000000000140/PTPRA.4_2493_20000_0.22065_0.07475_0.17715.png
                gene_name: PTPRA
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
PTPRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
Cons ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
KS ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
PTPRF   10000 perm   3 sec   (3947 perm/sec)   p_kst 3.819000e-01   p_cons 4.418000e-01   p_joint 7.364000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRF.4_5852_10000_0.3819_0.4418_0.7364.png
                gene_name: PTPRF
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 62 percent done.
PSTPIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
Cons ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
PSTPIP2   10000 perm   2 sec   (6238 perm/sec)   p_kst 4.317000e-01   p_cons 8.033000e-01   p_joint 6.334000e-01

Outputting figure to mutsig2_images.part000000000140/PSTPIP2.3_1061_10000_0.4317_0.8033_0.6334.png
                gene_name: PSTPIP2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 63 percent done.
PTCHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
Cons ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
PTCHD3   10000 perm   2 sec   (5673 perm/sec)   p_kst 3.032000e-01   p_cons 9.273000e-01   p_joint 4.033000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD3.3_2320_10000_0.3032_0.9273_0.4033.png
                gene_name: PTCHD3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 65 percent done.
PTER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
Cons ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
KS ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
PTER   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.427000e-01   p_cons 6.881000e-01   p_joint 5.340000e-01

Outputting figure to mutsig2_images.part000000000140/PTER.3_1066_10000_0.3427_0.6881_0.534.png
                gene_name: PTER
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 67 percent done.
PTGDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
PTGDR   10000 perm   2 sec   (6514 perm/sec)   p_kst 2.055000e-01   p_cons 6.692000e-01   p_joint 4.390000e-01

Outputting figure to mutsig2_images.part000000000140/PTGDR.3_1088_10000_0.2055_0.6692_0.439.png
                gene_name: PTGDR
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 68 percent done.
PTHLH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
Cons ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
PTHLH   10000 perm   2 sec   (6571 perm/sec)   p_kst 4.185000e-01   p_cons 3.148000e-01   p_joint 5.589000e-01

Outputting figure to mutsig2_images.part000000000140/PTHLH.3_550_10000_0.4185_0.3148_0.5589.png
                gene_name: PTHLH
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 70 percent done.
PTPN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
KS ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
PTPN6   10000 perm   2 sec   (5874 perm/sec)   p_kst 6.811000e-01   p_cons 2.846000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN6.3_2009_10000_0.6811_0.2846_0.6713.png
                gene_name: PTPN6
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 72 percent done.
PSMG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
PSMG3   10000 perm   1 sec   (7679 perm/sec)   p_kst 3.819000e-01   p_cons 4.870000e-01   p_joint 7.665000e-01

Outputting figure to mutsig2_images.part000000000140/PSMG3.2_377_10000_0.3819_0.487_0.7665.png
                gene_name: PSMG3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 73 percent done.
PTAFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
Cons ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
KS ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
PTAFR   10000 perm   1 sec   (7076 perm/sec)   p_kst 8.370000e-01   p_cons 1.928000e-01   p_joint 5.584000e-01

Outputting figure to mutsig2_images.part000000000140/PTAFR.2_1033_10000_0.837_0.1928_0.5584.png
                gene_name: PTAFR
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
PTBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
PTBP1   10000 perm   2 sec   (6148 perm/sec)   p_kst 7.820000e-02   p_cons 6.318000e-01   p_joint 2.646000e-01

Joint ci ratio: 8.214277e-03	ci left: 9.154389e-01	ci right 9.230387e-01	k: 18386	n:20000
Cons ci ratio: 2.113665e-02	ci left: 6.255736e-01	ci right 6.389879e-01	k: 12646	n:20000
KS ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
PTBP1   20000 perm   4 sec   (5460 perm/sec)   p_kst 7.535000e-02   p_cons 6.323000e-01   p_joint 9.193000e-01

Outputting figure to mutsig2_images.part000000000140/PTBP1.2_1734_20000_0.07535_0.6323_0.9193.png
                gene_name: PTBP1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.92 

Current progress: 77 percent done.
PTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
Cons ci ratio: 1.034734e-01	ci left: 1.189689e-01	ci right 1.320501e-01	k: 1254	n:10000
KS ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
PTCH2   10000 perm   2 sec   (5110 perm/sec)   p_kst 1.940000e-02   p_cons 1.254000e-01   p_joint 5.700000e-02

Joint ci ratio: 2.070849e-01	ci left: 1.577558e-02	ci right 1.946657e-02	k: 351	n:20000
Cons ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
KS ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
PTCH2   20000 perm   4 sec   (4578 perm/sec)   p_kst 1.855000e-02   p_cons 1.237000e-01   p_joint 1.755000e-02

Joint ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
Cons ci ratio: 5.967838e-02	ci left: 1.219684e-01	ci right 1.295043e-01	k: 3771	n:30000
KS ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
PTCH2   30000 perm   7 sec   (4362 perm/sec)   p_kst 1.766667e-02   p_cons 1.257000e-01   p_joint 2.923333e-02

Joint ci ratio: 1.071091e-01	ci left: 3.066201e-02	ci right 3.415631e-02	k: 1295	n:40000
Cons ci ratio: 5.139909e-02	ci left: 1.236774e-01	ci right 1.302268e-01	k: 5077	n:40000
KS ci ratio: 1.446650e-01	ci left: 1.671968e-02	ci right 1.935095e-02	k: 720	n:40000
PTCH2   40000 perm   9 sec   (4220 perm/sec)   p_kst 1.800000e-02   p_cons 1.269250e-01   p_joint 3.237500e-02

Joint ci ratio: 1.023150e-01	ci left: 2.705892e-02	ci right 2.999616e-02	k: 1425	n:50000
Cons ci ratio: 4.590451e-02	ci left: 1.243506e-01	ci right 1.302128e-01	k: 6363	n:50000
KS ci ratio: 1.272003e-01	ci left: 1.745314e-02	ci right 1.984321e-02	k: 931	n:50000
PTCH2   50000 perm   12 sec   (4122 perm/sec)   p_kst 1.862000e-02   p_cons 1.272600e-01   p_joint 2.850000e-02

Joint ci ratio: 9.268374e-02	ci left: 2.760661e-02	ci right 3.030587e-02	k: 1736	n:60000
Cons ci ratio: 4.171675e-02	ci left: 1.256008e-01	ci right 1.309686e-01	k: 7696	n:60000
KS ci ratio: 1.158225e-01	ci left: 1.764727e-02	ci right 1.983296e-02	k: 1123	n:60000
PTCH2   60000 perm   15 sec   (4009 perm/sec)   p_kst 1.871667e-02   p_cons 1.282667e-01   p_joint 2.893333e-02

Joint ci ratio: 8.056433e-02	ci left: 3.139475e-02	ci right 3.404417e-02	k: 2289	n:70000
Cons ci ratio: 3.861936e-02	ci left: 1.258167e-01	ci right 1.307856e-01	k: 8980	n:70000
KS ci ratio: 1.075378e-01	ci left: 1.762588e-02	ci right 1.964287e-02	k: 1303	n:70000
PTCH2   70000 perm   18 sec   (3929 perm/sec)   p_kst 1.861429e-02   p_cons 1.282857e-01   p_joint 3.270000e-02

Joint ci ratio: 7.545269e-02	ci left: 3.140467e-02	ci right 3.387937e-02	k: 2610	n:80000
Cons ci ratio: 3.627121e-02	ci left: 1.250844e-01	ci right 1.297176e-01	k: 10191	n:80000
KS ci ratio: 1.009133e-01	ci left: 1.757748e-02	ci right 1.945766e-02	k: 1480	n:80000
PTCH2   80000 perm   21 sec   (3858 perm/sec)   p_kst 1.850000e-02   p_cons 1.273875e-01   p_joint 3.262500e-02

Joint ci ratio: 8.216443e-02	ci left: 2.365222e-02	ci right 2.568969e-02	k: 2219	n:90000
Cons ci ratio: 3.429116e-02	ci left: 1.246105e-01	ci right 1.289691e-01	k: 11410	n:90000
KS ci ratio: 9.505849e-02	ci left: 1.766219e-02	ci right 1.943570e-02	k: 1668	n:90000
PTCH2   90000 perm   24 sec   (3786 perm/sec)   p_kst 1.853333e-02   p_cons 1.267778e-01   p_joint 2.465556e-02

Outputting figure to mutsig2_images.part000000000140/PTCH2.2_3720_90000_0.018533_0.12678_0.024656.png
                gene_name: PTCH2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 78 percent done.
PTCRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
Cons ci ratio: 3.147254e-02	ci left: 5.983512e-01	ci right 6.175859e-01	k: 6080	n:10000
KS ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
PTCRA   10000 perm   1 sec   (7268 perm/sec)   p_kst 9.073000e-01   p_cons 6.080000e-01   p_joint 9.916000e-01

Outputting figure to mutsig2_images.part000000000140/PTCRA.2_862_10000_0.9073_0.608_0.9916.png
                gene_name: PTCRA
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
PTDSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
Cons ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
KS ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
PTDSS2   10000 perm   2 sec   (6337 perm/sec)   p_kst 9.190000e-02   p_cons 4.304000e-01   p_joint 1.720000e-01

Joint ci ratio: 3.546624e-02	ci left: 3.724189e-01	ci right 3.859162e-01	k: 7583	n:20000
Cons ci ratio: 3.170321e-02	ci left: 4.263177e-01	ci right 4.401017e-01	k: 8664	n:20000
KS ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
PTDSS2   20000 perm   4 sec   (5433 perm/sec)   p_kst 9.135000e-02   p_cons 4.332000e-01   p_joint 3.791500e-01

Outputting figure to mutsig2_images.part000000000140/PTDSS2.2_1512_20000_0.09135_0.4332_0.37915.png
                gene_name: PTDSS2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 82 percent done.
PTF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
Cons ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
KS ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
PTF1A   10000 perm   1 sec   (6753 perm/sec)   p_kst 4.040000e-02   p_cons 5.132000e-01   p_joint 6.882000e-01

Joint ci ratio: 5.640770e-02	ci left: 1.889846e-01	ci right 2.000043e-01	k: 3889	n:20000
Cons ci ratio: 2.693761e-02	ci left: 5.072966e-01	ci right 5.211992e-01	k: 10285	n:20000
KS ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
PTF1A   20000 perm   3 sec   (5885 perm/sec)   p_kst 3.975000e-02   p_cons 5.142500e-01   p_joint 1.944500e-01

Joint ci ratio: 5.082007e-02	ci left: 1.612776e-01	ci right 1.697207e-01	k: 4964	n:30000
Cons ci ratio: 2.288894e-02	ci left: 4.886599e-01	ci right 5.000079e-01	k: 14830	n:30000
KS ci ratio: 1.125941e-01	ci left: 3.664280e-02	ci right 4.104708e-02	k: 1164	n:30000
PTF1A   30000 perm   5 sec   (5564 perm/sec)   p_kst 3.880000e-02   p_cons 4.943333e-01   p_joint 1.654667e-01

Joint ci ratio: 4.393605e-02	ci left: 1.623160e-01	ci right 1.696326e-01	k: 6638	n:40000
Cons ci ratio: 1.991041e-02	ci left: 4.872139e-01	ci right 4.970372e-01	k: 19685	n:40000
KS ci ratio: 9.784887e-02	ci left: 3.668440e-02	ci right 4.048296e-02	k: 1542	n:40000
PTF1A   40000 perm   7 sec   (5343 perm/sec)   p_kst 3.855000e-02   p_cons 4.921250e-01   p_joint 1.659500e-01

Outputting figure to mutsig2_images.part000000000140/PTF1A.2_995_40000_0.03855_0.49212_0.16595.png
                gene_name: PTF1A
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 83 percent done.
PTGDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
Cons ci ratio: 4.322499e-02	ci left: 4.414124e-01	ci right 4.610161e-01	k: 4512	n:10000
KS ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
PTGDS   10000 perm   1 sec   (7412 perm/sec)   p_kst 1.437000e-01   p_cons 4.512000e-01   p_joint 4.679000e-01

Outputting figure to mutsig2_images.part000000000140/PTGDS.2_597_10000_0.1437_0.4512_0.4679.png
                gene_name: PTGDS
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 85 percent done.
PTGER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
Cons ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
KS ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
PTGER2   10000 perm   1 sec   (6784 perm/sec)   p_kst 7.720000e-01   p_cons 6.802000e-01   p_joint 7.733000e-01

Outputting figure to mutsig2_images.part000000000140/PTGER2.2_1085_10000_0.772_0.6802_0.7733.png
                gene_name: PTGER2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 87 percent done.
PTGIR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.074776e-01	ci left: 1.110554e-01	ci right 1.237684e-01	k: 1173	n:10000
Cons ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
KS ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
PTGIR   10000 perm   2 sec   (6607 perm/sec)   p_kst 6.370000e-01   p_cons 6.650000e-02   p_joint 1.173000e-01

Joint ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
Cons ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
KS ci ratio: 2.090996e-02	ci left: 6.305923e-01	ci right 6.439678e-01	k: 12746	n:20000
PTGIR   20000 perm   3 sec   (5781 perm/sec)   p_kst 6.373000e-01   p_cons 5.915000e-02   p_joint 1.157500e-01

Joint ci ratio: 5.520170e-02	ci left: 1.399133e-01	ci right 1.478892e-01	k: 4316	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 1.706332e-02	ci left: 6.320973e-01	ci right 6.430094e-01	k: 19127	n:30000
PTGIR   30000 perm   5 sec   (5470 perm/sec)   p_kst 6.375667e-01   p_cons 5.936667e-02   p_joint 1.438667e-01

Outputting figure to mutsig2_images.part000000000140/PTGIR.2_1169_30000_0.63757_0.059367_0.14387.png
                gene_name: PTGIR
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 88 percent done.
PTGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
PTGR1   10000 perm   1 sec   (6735 perm/sec)   p_kst 4.941000e-01   p_cons 9.360000e-02   p_joint 6.230000e-01

Joint ci ratio: 1.976116e-02	ci left: 6.564007e-01	ci right 6.695519e-01	k: 13260	n:20000
Cons ci ratio: 8.612820e-02	ci left: 8.979365e-02	ci right 9.792487e-02	k: 1876	n:20000
KS ci ratio: 2.818044e-02	ci left: 4.847481e-01	ci right 4.986543e-01	k: 9834	n:20000
PTGR1   20000 perm   3 sec   (5852 perm/sec)   p_kst 4.917000e-01   p_cons 9.380000e-02   p_joint 6.630000e-01

Outputting figure to mutsig2_images.part000000000140/PTGR1.2_1057_20000_0.4917_0.0938_0.663.png
                gene_name: PTGR1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 90 percent done.
PTH1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
Cons ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
KS ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
PTH1R   10000 perm   2 sec   (6186 perm/sec)   p_kst 8.764000e-01   p_cons 6.320000e-01   p_joint 9.602000e-01

Outputting figure to mutsig2_images.part000000000140/PTH1R.2_1838_10000_0.8764_0.632_0.9602.png
                gene_name: PTH1R
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 92 percent done.
PTMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
Cons ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
KS ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
PTMA   10000 perm   1 sec   (7326 perm/sec)   p_kst 9.116000e-01   p_cons 3.047000e-01   p_joint 7.054000e-01

Outputting figure to mutsig2_images.part000000000140/PTMA.2_356_10000_0.9116_0.3047_0.7054.png
                gene_name: PTMA
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 93 percent done.
PTP4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
KS ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
PTP4A1   10000 perm   1 sec   (6980 perm/sec)   p_kst 9.816000e-01   p_cons 6.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTP4A1.2_542_10000_0.9816_0.6962_1.png
                gene_name: PTP4A1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PTPLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778118e-03	ci left: 9.935271e-01	ci right 9.963728e-01	k: 9951	n:10000
Cons ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
KS ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
PTPLA   10000 perm   1 sec   (6809 perm/sec)   p_kst 3.120000e-02   p_cons 4.734000e-01   p_joint 9.951000e-01

Joint ci ratio: 5.355960e-02	ci left: 2.055606e-01	ci right 2.169235e-01	k: 4224	n:20000
Cons ci ratio: 2.908611e-02	ci left: 4.689575e-01	ci right 4.828495e-01	k: 9518	n:20000
KS ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
PTPLA   20000 perm   3 sec   (5928 perm/sec)   p_kst 3.045000e-02   p_cons 4.759000e-01   p_joint 2.112000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 2.384158e-02	ci left: 4.683025e-01	ci right 4.796359e-01	k: 14219	n:30000
KS ci ratio: 1.273109e-01	ci left: 2.867995e-02	ci right 3.261164e-02	k: 918	n:30000
PTPLA   30000 perm   5 sec   (5574 perm/sec)   p_kst 3.060000e-02   p_cons 4.739667e-01   p_joint 1

Joint ci ratio: 5.056415e-02	ci left: 1.273122e-01	ci right 1.339415e-01	k: 5224	n:40000
Cons ci ratio: 2.065252e-02	ci left: 4.689463e-01	ci right 4.787575e-01	k: 18954	n:40000
KS ci ratio: 1.127636e-01	ci left: 2.766904e-02	ci right 3.099976e-02	k: 1172	n:40000
PTPLA   40000 perm   7 sec   (5356 perm/sec)   p_kst 2.930000e-02   p_cons 4.738500e-01   p_joint 1.306000e-01

Joint ci ratio: 4.518724e-02	ci left: 1.278560e-01	ci right 1.337869e-01	k: 6540	n:50000
Cons ci ratio: 1.847714e-02	ci left: 4.693351e-01	ci right 4.781080e-01	k: 23686	n:50000
KS ci ratio: 1.019111e-01	ci left: 2.727346e-02	ci right 3.022160e-02	k: 1436	n:50000
PTPLA   50000 perm   10 sec   (5181 perm/sec)   p_kst 2.872000e-02   p_cons 4.737200e-01   p_joint 1.308000e-01

Joint ci ratio: 4.116333e-02	ci left: 1.285907e-01	ci right 1.340117e-01	k: 7877	n:60000
Cons ci ratio: 1.682522e-02	ci left: 4.709639e-01	ci right 4.789719e-01	k: 28498	n:60000
KS ci ratio: 9.268374e-02	ci left: 2.760661e-02	ci right 3.030587e-02	k: 1736	n:60000
PTPLA   60000 perm   12 sec   (5033 perm/sec)   p_kst 2.893333e-02   p_cons 4.749667e-01   p_joint 1.312833e-01

Outputting figure to mutsig2_images.part000000000140/PTPLA.2_895_60000_0.028933_0.47497_0.13128.png
                gene_name: PTPLA
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 97 percent done.
PTPN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 4.644672e-02	ci left: 4.062155e-01	ci right 4.256335e-01	k: 4159	n:10000
PTPN21   10000 perm   2 sec   (5189 perm/sec)   p_kst 4.159000e-01   p_cons 2.094000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN21.2_3597_10000_0.4159_0.2094_1.png
                gene_name: PTPN21
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PTPRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
Cons ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
KS ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
PTPRE   10000 perm   2 sec   (5864 perm/sec)   p_kst 4.432000e-01   p_cons 9.407000e-01   p_joint 5.104000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRE.2_2218_10000_0.4432_0.9407_0.5104.png
                gene_name: PTPRE
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000140
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 140 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 4422350: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000141> was used as the working directory.
Started at Wed Oct 24 18:05:02 2012
Results reported at Wed Oct 24 18:14:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000141.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000141.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 141  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000141.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    595.28 sec.
    Max Memory :      5375 MB
    Max Swap   :      7765 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
141
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 141
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 141: processing genes 12667 - 12756
Calculating significance of each gene.
Using projection method.
12667	PTPRG	5.692396e-01
12668	PTPRH	9.302205e-01
12669	PTPRJ	9.334724e-01
12670	PTPRK	4.289367e-01
12671	PTPRM	8.540132e-01
12672	PTPRN	6.235572e-01
12673	PTPRN2	1
12674	PTPRO	8.195125e-01
12675	PTPRR	2.335331e-01
12676	PTPRS	9.483190e-01
12677	PTPRT	8.863195e-01
12678	PTPRU	7.184066e-01
12679	PTPRZ1	1
12680	PTRF	1
12681	PTRH1	1
12682	PTRH2	1
12683	PTS	1
12684	PTTG1	6.603310e-01
12685	PTTG1IP	1
12686	PTTG2	3.274726e-01
12687	PTX3	5.032383e-01
12688	PTX4	4.100220e-01
12689	PUF60	6.733932e-01
12690	PUM1	9.707973e-01
12691	PUM2	8.971792e-01
12692	PURA	8.241115e-01
12693	PURB	4.004457e-01
12694	PURG	3.801369e-01
12695	PUS1	8.980192e-01
12696	PUS10	1
12697	PUS3	7.581656e-01
12698	PUS7	4.354610e-01
12699	PUS7L	1
12700	PUSL1	1
12701	PVALB	1
12702	PVR	1
12703	PVRIG	1.982255e-01
12704	PVRL1	4.416391e-01
12705	PVRL2	1
12706	PVRL3	1
12707	PVRL4	5.466575e-01
12708	PWP1	9.514302e-01
12709	PWP2	9.923865e-01
12710	PWWP2A	1
12711	PWWP2B	1
12712	PXDN	9.935024e-01
12713	PXDNL	7.642573e-01
12714	PXK	3.311012e-01
12715	PXMP2	5.900484e-01
12716	PXMP4	1.222000e-01
12717	PXN	1
12718	PXT1	1
12719	PYCARD	1
12720	PYCR1	1
12721	PYCR2	7.292602e-01
12722	PYCRL	1
12723	PYDC1	1
12724	PYDC2	1.916839e-02
12725	PYGB	1
12726	PYGL	8.380340e-01
12727	PYGM	7.046828e-01
12728	PYGO1	9.200857e-01
12729	PYGO2	9.201373e-01
12730	PYHIN1	1.167114e-04
12731	PYROXD1	6.177421e-02
12732	PYROXD2	9.444366e-01
12733	PYY	1
12734	PZP	4.134877e-01
12735	ProSAPiP1	1
12736	QARS	9.786877e-01
12737	QDPR	1.265279e-01
12738	QKI	1
12739	QPCT	8.725005e-01
12740	QPCTL	1
12741	QPRT	1
12742	QRFP	1
12743	QRFPR	3.643031e-02
12744	QRICH1	8.999548e-01
12745	QRICH2	1
12746	QRSL1	9.478576e-01
12747	QSER1	1
12748	QSOX1	3.441681e-01
12749	QSOX2	4.436430e-01
12750	QTRT1	7.408568e-01
12751	QTRTD1	7.932900e-01
12752	R3HDM1	9.872191e-01
12753	R3HDM2	9.298517e-01
12754	R3HDML	9.415785e-02
12755	RAB10	1
12756	RAB11A	1
Done

Running MutSig 2:
Scatter job 141: processing genes 12667 - 12756
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PXDNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.134564e-02	ci left: 7.629399e-01	ci right 7.795018e-01	k: 7713	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
PXDNL   10000 perm   2 sec   (4011 perm/sec)   p_kst 6.135000e-01   p_cons 8.413000e-01   p_joint 7.713000e-01

Outputting figure to mutsig2_images.part000000000141/PXDNL.39_4484_10000_0.6135_0.8413_0.7713.png
                gene_name: PXDNL
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 2 percent done.
PTPRZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
Cons ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
KS ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
PTPRZ1   10000 perm   3 sec   (3677 perm/sec)   p_kst 5.736000e-01   p_cons 1.327000e-01   p_joint 3.684000e-01

Joint ci ratio: 3.443783e-02	ci left: 3.863217e-01	ci right 3.999094e-01	k: 7862	n:20000
Cons ci ratio: 7.011743e-02	ci left: 1.303908e-01	ci right 1.399155e-01	k: 2702	n:20000
KS ci ratio: 2.393641e-02	ci left: 5.659092e-01	ci right 5.796697e-01	k: 11456	n:20000
PTPRZ1   20000 perm   6 sec   (3402 perm/sec)   p_kst 5.728000e-01   p_cons 1.351000e-01   p_joint 3.931000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRZ1.36_7068_20000_0.5728_0.1351_0.3931.png
                gene_name: PTPRZ1
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 4 percent done.
PTPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
PTPRT   10000 perm   2 sec   (4323 perm/sec)   p_kst 4.530000e-02   p_cons 7.397000e-01   p_joint 1.083000e-01

Joint ci ratio: 8.326984e-02	ci left: 9.558124e-02	ci right 1.039355e-01	k: 1994	n:20000
Cons ci ratio: 1.638300e-02	ci left: 7.349696e-01	ci right 7.471603e-01	k: 14822	n:20000
KS ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
PTPRT   20000 perm   5 sec   (3988 perm/sec)   p_kst 4.630000e-02   p_cons 7.411000e-01   p_joint 9.970000e-02

Joint ci ratio: 7.246714e-02	ci left: 8.563719e-02	ci right 9.210935e-02	k: 2665	n:30000
Cons ci ratio: 1.347897e-02	ci left: 7.331523e-01	ci right 7.431349e-01	k: 22145	n:30000
KS ci ratio: 1.049530e-01	ci left: 4.209669e-02	ci right 4.679205e-02	k: 1332	n:30000
PTPRT   30000 perm   8 sec   (3845 perm/sec)   p_kst 4.440000e-02   p_cons 7.381667e-01   p_joint 8.883333e-02

Joint ci ratio: 5.865291e-02	ci left: 9.749609e-02	ci right 1.034121e-01	k: 4017	n:40000
Cons ci ratio: 1.163366e-02	ci left: 7.351439e-01	ci right 7.437713e-01	k: 29579	n:40000
KS ci ratio: 9.125109e-02	ci left: 4.208413e-02	ci right 4.613239e-02	k: 1763	n:40000
PTPRT   40000 perm   11 sec   (3756 perm/sec)   p_kst 4.407500e-02   p_cons 7.394750e-01   p_joint 1.004250e-01

Outputting figure to mutsig2_images.part000000000141/PTPRT.24_4511_40000_0.044075_0.73947_0.10043.png
                gene_name: PTPRT
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 6 percent done.
PXDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
PXDN   10000 perm   2 sec   (4657 perm/sec)   p_kst 1.266000e-01   p_cons 3.179000e-01   p_joint 1.443000e-01

Joint ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
Cons ci ratio: 4.084683e-02	ci left: 3.088131e-01	ci right 3.217406e-01	k: 6305	n:20000
KS ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
PXDN   20000 perm   5 sec   (4261 perm/sec)   p_kst 1.300500e-01   p_cons 3.152500e-01   p_joint 1.647000e-01

Outputting figure to mutsig2_images.part000000000141/PXDN.17_4532_20000_0.13005_0.31525_0.1647.png
                gene_name: PXDN
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 8 percent done.
PZP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
Cons ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
PZP   10000 perm   2 sec   (4946 perm/sec)   p_kst 6.882000e-01   p_cons 2.135000e-01   p_joint 6.087000e-01

Outputting figure to mutsig2_images.part000000000141/PZP.17_4593_10000_0.6882_0.2135_0.6087.png
                gene_name: PZP
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 9 percent done.
PTPRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
PTPRN2   10000 perm   2 sec   (5044 perm/sec)   p_kst 5.012000e-01   p_cons 5.384000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN2.15_3140_10000_0.5012_0.5384_0.647.png
                gene_name: PTPRN2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 11 percent done.
PYHIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
PYHIN1   10000 perm   2 sec   (5730 perm/sec)   p_kst 1.376000e-01   p_cons 5.006000e-01   p_joint 2.420000e-01

Outputting figure to mutsig2_images.part000000000141/PYHIN1.15_1538_10000_0.1376_0.5006_0.242.png
                gene_name: PYHIN1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 13 percent done.
PTPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
KS ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
PTPRH   10000 perm   2 sec   (5397 perm/sec)   p_kst 9.430000e-01   p_cons 3.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTPRH.11_3428_10000_0.943_0.3926_1.png
                gene_name: PTPRH
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
PTPRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
PTPRK   10000 perm   2 sec   (4932 perm/sec)   p_kst 2.148000e-01   p_cons 8.084000e-01   p_joint 3.238000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRK.11_4465_10000_0.2148_0.8084_0.3238.png
                gene_name: PTPRK
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 17 percent done.
PTPRU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
PTPRU   10000 perm   2 sec   (5073 perm/sec)   p_kst 7.820000e-02   p_cons 1.602000e-01   p_joint 8.420000e-02

Joint ci ratio: 9.773037e-02	ci left: 7.080016e-02	ci right 7.812413e-02	k: 1488	n:20000
Cons ci ratio: 6.260429e-02	ci left: 1.587444e-01	ci right 1.690536e-01	k: 3277	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
PTPRU   20000 perm   4 sec   (4601 perm/sec)   p_kst 7.775000e-02   p_cons 1.638500e-01   p_joint 7.440000e-02

Outputting figure to mutsig2_images.part000000000141/PTPRU.10_4487_20000_0.07775_0.16385_0.0744.png
                gene_name: PTPRU
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 19 percent done.
PTPRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
KS ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
PTPRG   10000 perm   2 sec   (5397 perm/sec)   p_kst 6.180000e-01   p_cons 2.470000e-02   p_joint 8.300000e-02

Joint ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
Cons ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
KS ci ratio: 2.184459e-02	ci left: 6.100708e-01	ci right 6.235952e-01	k: 12337	n:20000
PTPRG   20000 perm   4 sec   (4912 perm/sec)   p_kst 6.168500e-01   p_cons 2.390000e-02   p_joint 8.130000e-02

Joint ci ratio: 7.471943e-02	ci left: 8.088484e-02	ci right 8.719599e-02	k: 2520	n:30000
Cons ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
KS ci ratio: 1.782313e-02	ci left: 6.116719e-01	ci right 6.227054e-01	k: 18516	n:30000
PTPRG   30000 perm   6 sec   (4706 perm/sec)   p_kst 6.172000e-01   p_cons 2.486667e-02   p_joint 8.400000e-02

Joint ci ratio: 6.136352e-02	ci left: 8.972715e-02	ci right 9.543215e-02	k: 3702	n:40000
Cons ci ratio: 1.233527e-01	ci left: 2.310407e-02	ci right 2.616548e-02	k: 984	n:40000
KS ci ratio: 1.573338e-02	ci left: 6.033208e-01	ci right 6.129135e-01	k: 24325	n:40000
PTPRG   40000 perm   9 sec   (4573 perm/sec)   p_kst 6.081250e-01   p_cons 2.460000e-02   p_joint 9.255000e-02

Joint ci ratio: 5.651316e-02	ci left: 8.529390e-02	ci right 9.027408e-02	k: 4388	n:50000
Cons ci ratio: 1.116981e-01	ci left: 2.269563e-02	ci right 2.540001e-02	k: 1201	n:50000
KS ci ratio: 1.408440e-02	ci left: 6.034242e-01	ci right 6.120033e-01	k: 30386	n:50000
PTPRG   50000 perm   11 sec   (4464 perm/sec)   p_kst 6.077200e-01   p_cons 2.402000e-02   p_joint 8.776000e-02

Joint ci ratio: 5.644593e-02	ci left: 7.229607e-02	ci right 7.651187e-02	k: 4463	n:60000
Cons ci ratio: 1.024915e-01	ci left: 2.257886e-02	ci right 2.503417e-02	k: 1427	n:60000
KS ci ratio: 1.285557e-02	ci left: 6.038632e-01	ci right 6.116931e-01	k: 36467	n:60000
PTPRG   60000 perm   14 sec   (4378 perm/sec)   p_kst 6.077833e-01   p_cons 2.378333e-02   p_joint 7.438333e-02

Joint ci ratio: 4.891724e-02	ci left: 8.196938e-02	ci right 8.609375e-02	k: 5881	n:70000
Cons ci ratio: 9.477233e-02	ci left: 2.272533e-02	ci right 2.500009e-02	k: 1669	n:70000
KS ci ratio: 1.189764e-02	ci left: 6.043290e-01	ci right 6.115764e-01	k: 42557	n:70000
PTPRG   70000 perm   16 sec   (4310 perm/sec)   p_kst 6.079571e-01   p_cons 2.384286e-02   p_joint 8.401429e-02

Outputting figure to mutsig2_images.part000000000141/PTPRG.8_4458_70000_0.60796_0.023843_0.084014.png
                gene_name: PTPRG
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.086 

Current progress: 21 percent done.
PTPRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
Cons ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
KS ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
PTPRN   10000 perm   2 sec   (6204 perm/sec)   p_kst 5.837000e-01   p_cons 7.088000e-01   p_joint 7.346000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN.8_3032_10000_0.5837_0.7088_0.7346.png
                gene_name: PTPRN
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 23 percent done.
PTPRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
PTPRO   10000 perm   2 sec   (5177 perm/sec)   p_kst 4.007000e-01   p_cons 2.380000e-02   p_joint 9.020000e-02

Joint ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
Cons ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
KS ci ratio: 3.389197e-02	ci left: 3.939482e-01	ci right 4.075807e-01	k: 8015	n:20000
PTPRO   20000 perm   4 sec   (4719 perm/sec)   p_kst 4.007500e-01   p_cons 2.095000e-02   p_joint 6.300000e-02

Joint ci ratio: 8.192707e-02	ci left: 6.798799e-02	ci right 7.382878e-02	k: 2126	n:30000
Cons ci ratio: 1.554097e-01	ci left: 1.915081e-02	ci right 2.240959e-02	k: 622	n:30000
KS ci ratio: 2.776113e-02	ci left: 3.936848e-01	ci right 4.048014e-01	k: 11977	n:30000
PTPRO   30000 perm   7 sec   (4546 perm/sec)   p_kst 3.992333e-01   p_cons 2.073333e-02   p_joint 7.086667e-02

Joint ci ratio: 6.900644e-02	ci left: 7.206820e-02	ci right 7.724375e-02	k: 2985	n:40000
Cons ci ratio: 1.257285e-01	ci left: 2.223148e-02	ci right 2.523821e-02	k: 948	n:40000
KS ci ratio: 2.415579e-02	ci left: 3.921754e-01	ci right 4.017896e-01	k: 15879	n:40000
PTPRO   40000 perm   9 sec   (4424 perm/sec)   p_kst 3.969750e-01   p_cons 2.370000e-02   p_joint 7.462500e-02

Joint ci ratio: 6.380043e-02	ci left: 6.795592e-02	ci right 7.245413e-02	k: 3509	n:50000
Cons ci ratio: 1.136509e-01	ci left: 2.191768e-02	ci right 2.457807e-02	k: 1161	n:50000
KS ci ratio: 2.209808e-02	ci left: 3.819690e-01	ci right 3.905242e-01	k: 19312	n:50000
PTPRO   50000 perm   12 sec   (4339 perm/sec)   p_kst 3.862400e-01   p_cons 2.322000e-02   p_joint 7.018000e-02

Joint ci ratio: 6.062901e-02	ci left: 6.315517e-02	ci right 6.712035e-02	k: 3907	n:60000
Cons ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
KS ci ratio: 2.016390e-02	ci left: 3.825510e-01	ci right 3.903600e-01	k: 23187	n:60000
PTPRO   60000 perm   14 sec   (4251 perm/sec)   p_kst 3.864500e-01   p_cons 2.313333e-02   p_joint 6.511667e-02

Joint ci ratio: 5.542199e-02	ci left: 6.484844e-02	ci right 6.855900e-02	k: 4668	n:70000
Cons ci ratio: 9.601654e-02	ci left: 2.213932e-02	ci right 2.438615e-02	k: 1627	n:70000
KS ci ratio: 1.866682e-02	ci left: 3.828761e-01	ci right 3.901048e-01	k: 27054	n:70000
PTPRO   70000 perm   17 sec   (4165 perm/sec)   p_kst 3.864857e-01   p_cons 2.324286e-02   p_joint 6.668571e-02

Outputting figure to mutsig2_images.part000000000141/PTPRO.8_3755_70000_0.38649_0.023243_0.066686.png
                gene_name: PTPRO
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 25 percent done.
PTPRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
Cons ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
KS ci ratio: 1.750921e-02	ci left: 8.262552e-01	ci right 8.409500e-01	k: 8337	n:10000
PTPRR   10000 perm   2 sec   (5694 perm/sec)   p_kst 8.337000e-01   p_cons 4.160000e-01   p_joint 7.316000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRR.8_2030_10000_0.8337_0.416_0.7316.png
                gene_name: PTPRR
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 26 percent done.
PTPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
Cons ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
KS ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
PTPRS   10000 perm   2 sec   (4828 perm/sec)   p_kst 8.030000e-01   p_cons 1.243000e-01   p_joint 8.600000e-01

Joint ci ratio: 2.195101e-02	ci left: 6.077635e-01	ci right 6.213032e-01	k: 12291	n:20000
Cons ci ratio: 7.328493e-02	ci left: 1.205447e-01	ci right 1.297646e-01	k: 2502	n:20000
KS ci ratio: 1.390933e-02	ci left: 7.932262e-01	ci right 8.043868e-01	k: 15977	n:20000
PTPRS   20000 perm   5 sec   (4419 perm/sec)   p_kst 7.988500e-01   p_cons 1.251000e-01   p_joint 6.145500e-01

Outputting figure to mutsig2_images.part000000000141/PTPRS.7_5995_20000_0.79885_0.1251_0.61455.png
                gene_name: PTPRS
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 28 percent done.
PUS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
Cons ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
KS ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
PUS7   10000 perm   2 sec   (6100 perm/sec)   p_kst 5.711000e-01   p_cons 8.083000e-01   p_joint 7.508000e-01

Outputting figure to mutsig2_images.part000000000141/PUS7.7_2046_10000_0.5711_0.8083_0.7508.png
                gene_name: PUS7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 30 percent done.
PTPRM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
Cons ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
KS ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
PTPRM   10000 perm   2 sec   (5261 perm/sec)   p_kst 2.836000e-01   p_cons 5.492000e-01   p_joint 4.204000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRM.6_4530_10000_0.2836_0.5492_0.4204.png
                gene_name: PTPRM
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 32 percent done.
PUM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
Cons ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
PUM1   10000 perm   2 sec   (5275 perm/sec)   p_kst 1.947000e-01   p_cons 7.330000e-02   p_joint 9.930000e-02

Joint ci ratio: 8.233326e-02	ci left: 9.759325e-02	ci right 1.060229e-01	k: 2035	n:20000
Cons ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
KS ci ratio: 5.632683e-02	ci left: 1.894298e-01	ci right 2.004591e-01	k: 3898	n:20000
PUM1   20000 perm   4 sec   (4763 perm/sec)   p_kst 1.949000e-01   p_cons 7.540000e-02   p_joint 1.017500e-01

Outputting figure to mutsig2_images.part000000000141/PUM1.6_3651_20000_0.1949_0.0754_0.10175.png
                gene_name: PUM1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 34 percent done.
PXK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
Cons ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
KS ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
PXK   10000 perm   2 sec   (5783 perm/sec)   p_kst 5.580000e-02   p_cons 2.297000e-01   p_joint 8.380000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 5.076653e-02	ci left: 2.237859e-01	ci right 2.354928e-01	k: 4592	n:20000
KS ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
PXK   20000 perm   4 sec   (5175 perm/sec)   p_kst 5.300000e-02   p_cons 2.296000e-01   p_joint 5.675000e-02

Joint ci ratio: 9.054644e-02	ci left: 5.613148e-02	ci right 6.148769e-02	k: 1763	n:30000
Cons ci ratio: 4.135928e-02	ci left: 2.256446e-01	ci right 2.352076e-01	k: 6912	n:30000
KS ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
PXK   30000 perm   6 sec   (4938 perm/sec)   p_kst 5.370000e-02   p_cons 2.304000e-01   p_joint 5.876667e-02

Outputting figure to mutsig2_images.part000000000141/PXK.6_1809_30000_0.0537_0.2304_0.058767.png
                gene_name: PXK
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 36 percent done.
PYGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
Cons ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
KS ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
PYGM   10000 perm   2 sec   (5905 perm/sec)   p_kst 3.672000e-01   p_cons 2.181000e-01   p_joint 3.523000e-01

Outputting figure to mutsig2_images.part000000000141/PYGM.6_2609_10000_0.3672_0.2181_0.3523.png
                gene_name: PYGM
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 38 percent done.
QRFPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
Cons ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
KS ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
QRFPR   10000 perm   1 sec   (7599 perm/sec)   p_kst 1.779000e-01   p_cons 5.340000e-02   p_joint 7.430000e-02

Joint ci ratio: 8.425854e-02	ci left: 9.352072e-02	ci right 1.017967e-01	k: 1952	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 5.953444e-02	ci left: 1.728196e-01	ci right 1.834741e-01	k: 3562	n:20000
QRFPR   20000 perm   3 sec   (6661 perm/sec)   p_kst 1.781000e-01   p_cons 5.225000e-02   p_joint 9.760000e-02

Joint ci ratio: 6.206373e-02	ci left: 1.137122e-01	ci right 1.210287e-01	k: 3520	n:30000
Cons ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
KS ci ratio: 4.846377e-02	ci left: 1.746766e-01	ci right 1.833856e-01	k: 5370	n:30000
QRFPR   30000 perm   5 sec   (6302 perm/sec)   p_kst 1.790000e-01   p_cons 5.413333e-02   p_joint 1.173333e-01

Outputting figure to mutsig2_images.part000000000141/QRFPR.6_1320_30000_0.179_0.054133_0.11733.png
                gene_name: QRFPR
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 40 percent done.
QSER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 7.146083e-02	ci left: 2.229660e-01	ci right 2.395908e-01	k: 2312	n:10000
QSER1   10000 perm   2 sec   (4988 perm/sec)   p_kst 2.312000e-01   p_cons 1.898000e-01   p_joint 2.014000e-01

Outputting figure to mutsig2_images.part000000000141/QSER1.6_5252_10000_0.2312_0.1898_0.2014.png
                gene_name: QSER1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 42 percent done.
QSOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
Cons ci ratio: 8.243893e-02	ci left: 1.767434e-01	ci right 1.920409e-01	k: 1843	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
QSOX1   10000 perm   2 sec   (5727 perm/sec)   p_kst 1.191000e-01   p_cons 1.843000e-01   p_joint 2.023000e-01

Joint ci ratio: 6.629463e-02	ci left: 1.438447e-01	ci right 1.537576e-01	k: 2975	n:20000
Cons ci ratio: 5.596161e-02	ci left: 1.914577e-01	ci right 2.025305e-01	k: 3939	n:20000
KS ci ratio: 7.518557e-02	ci left: 1.151334e-01	ci right 1.241775e-01	k: 2392	n:20000
QSOX1   20000 perm   4 sec   (5173 perm/sec)   p_kst 1.196000e-01   p_cons 1.969500e-01   p_joint 1.487500e-01

Outputting figure to mutsig2_images.part000000000141/QSOX1.6_2305_20000_0.1196_0.19695_0.14875.png
                gene_name: QSOX1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 43 percent done.
PTPRJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
KS ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
PTPRJ   10000 perm   2 sec   (5582 perm/sec)   p_kst 2.343000e-01   p_cons 4.371000e-01   p_joint 2.363000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRJ.5_4123_10000_0.2343_0.4371_0.2363.png
                gene_name: PTPRJ
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 45 percent done.
PUF60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
PUF60   10000 perm   2 sec   (6157 perm/sec)   p_kst 2.311000e-01   p_cons 1.779000e-01   p_joint 2.721000e-01

Outputting figure to mutsig2_images.part000000000141/PUF60.5_1728_10000_0.2311_0.1779_0.2721.png
                gene_name: PUF60
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
PUM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
Cons ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
PUM2   10000 perm   2 sec   (5579 perm/sec)   p_kst 3.304000e-01   p_cons 1.051000e-01   p_joint 2.632000e-01

Joint ci ratio: 5.339142e-02	ci left: 2.066002e-01	ci right 2.179836e-01	k: 4245	n:20000
Cons ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
KS ci ratio: 3.915888e-02	ci left: 3.272143e-01	ci right 3.403341e-01	k: 6675	n:20000
PUM2   20000 perm   4 sec   (5044 perm/sec)   p_kst 3.337500e-01   p_cons 1.052000e-01   p_joint 2.122500e-01

Outputting figure to mutsig2_images.part000000000141/PUM2.5_3275_20000_0.33375_0.1052_0.21225.png
                gene_name: PUM2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 49 percent done.
PUS7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
Cons ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
KS ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
PUS7L   10000 perm   2 sec   (6002 perm/sec)   p_kst 2.600000e-01   p_cons 2.863000e-01   p_joint 3.665000e-01

Outputting figure to mutsig2_images.part000000000141/PUS7L.5_2138_10000_0.26_0.2863_0.3665.png
                gene_name: PUS7L
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 51 percent done.
PYROXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
PYROXD1   10000 perm   1 sec   (7109 perm/sec)   p_kst 6.361000e-01   p_cons 7.450000e-01   p_joint 7.646000e-01

Outputting figure to mutsig2_images.part000000000141/PYROXD1.5_1551_10000_0.6361_0.745_0.7646.png
                gene_name: PYROXD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 53 percent done.
QRICH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
KS ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
QRICH2   10000 perm   2 sec   (5592 perm/sec)   p_kst 7.649000e-01   p_cons 8.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/QRICH2.5_5068_10000_0.7649_0.8134_1.png
                gene_name: QRICH2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
R3HDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
Cons ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
KS ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
R3HDM1   10000 perm   2 sec   (6154 perm/sec)   p_kst 4.450000e-01   p_cons 7.052000e-01   p_joint 7.324000e-01

Outputting figure to mutsig2_images.part000000000141/R3HDM1.5_3396_10000_0.445_0.7052_0.7324.png
                gene_name: R3HDM1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 57 percent done.
PTX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
Cons ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
KS ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
PTX4   10000 perm   1 sec   (7098 perm/sec)   p_kst 5.031000e-01   p_cons 1.587000e-01   p_joint 4.300000e-01

Outputting figure to mutsig2_images.part000000000141/PTX4.4_1433_10000_0.5031_0.1587_0.43.png
                gene_name: PTX4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 58 percent done.
PURG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
Cons ci ratio: 1.195306e-01	ci left: 9.126730e-02	ci right 1.029686e-01	k: 970	n:10000
KS ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
PURG   10000 perm   1 sec   (6792 perm/sec)   p_kst 5.422000e-01   p_cons 9.700000e-02   p_joint 2.267000e-01

Joint ci ratio: 4.243159e-02	ci left: 2.927093e-01	ci right 3.054491e-01	k: 5981	n:20000
Cons ci ratio: 8.684489e-02	ci left: 8.842102e-02	ci right 9.649791e-02	k: 1848	n:20000
KS ci ratio: 2.535568e-02	ci left: 5.374668e-01	ci right 5.513203e-01	k: 10888	n:20000
PURG   20000 perm   3 sec   (6106 perm/sec)   p_kst 5.444000e-01   p_cons 9.240000e-02   p_joint 2.990500e-01

Outputting figure to mutsig2_images.part000000000141/PURG.4_1157_20000_0.5444_0.0924_0.29905.png
                gene_name: PURG
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 60 percent done.
PVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
Cons ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
KS ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
PVRL1   10000 perm   2 sec   (6465 perm/sec)   p_kst 1.057000e-01   p_cons 8.318000e-01   p_joint 1.918000e-01

Joint ci ratio: 5.839100e-02	ci left: 1.785028e-01	ci right 1.892893e-01	k: 3677	n:20000
Cons ci ratio: 1.248952e-02	ci left: 8.259863e-01	ci right 8.364172e-01	k: 16625	n:20000
KS ci ratio: 8.011688e-02	ci left: 1.026010e-01	ci right 1.112137e-01	k: 2137	n:20000
PVRL1   20000 perm   3 sec   (5786 perm/sec)   p_kst 1.068500e-01   p_cons 8.312500e-01   p_joint 1.838500e-01

Outputting figure to mutsig2_images.part000000000141/PVRL1.4_2024_20000_0.10685_0.83125_0.18385.png
                gene_name: PVRL1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
QDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
Cons ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
KS ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
QDPR   10000 perm   1 sec   (7049 perm/sec)   p_kst 4.332000e-01   p_cons 6.980000e-02   p_joint 2.586000e-01

Joint ci ratio: 3.702248e-02	ci left: 3.524970e-01	ci right 3.658440e-01	k: 7183	n:20000
Cons ci ratio: 1.018547e-01	ci left: 6.542758e-02	ci right 7.249836e-02	k: 1378	n:20000
KS ci ratio: 3.187486e-02	ci left: 4.236732e-01	ci right 4.374470e-01	k: 8611	n:20000
QDPR   20000 perm   3 sec   (6266 perm/sec)   p_kst 4.305500e-01   p_cons 6.890000e-02   p_joint 3.591500e-01

Joint ci ratio: 3.188463e-02	ci left: 3.296585e-01	ci right 3.403734e-01	k: 10050	n:30000
Cons ci ratio: 8.330529e-02	ci left: 6.586293e-02	ci right 7.162093e-02	k: 2061	n:30000
KS ci ratio: 2.614804e-02	ci left: 4.226578e-01	ci right 4.338895e-01	k: 12848	n:30000
QDPR   30000 perm   5 sec   (5958 perm/sec)   p_kst 4.282667e-01   p_cons 6.870000e-02   p_joint 3.350000e-01

Outputting figure to mutsig2_images.part000000000141/QDPR.4_763_30000_0.42827_0.0687_0.335.png
                gene_name: QDPR
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 64 percent done.
QRICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
QRICH1   10000 perm   2 sec   (6074 perm/sec)   p_kst 5.314000e-01   p_cons 6.391000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000141/QRICH1.4_2367_10000_0.5314_0.6391_0.6519.png
                gene_name: QRICH1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 66 percent done.
QSOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
QSOX2   10000 perm   2 sec   (6339 perm/sec)   p_kst 7.134000e-01   p_cons 1.764000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000141/QSOX2.4_2145_10000_0.7134_0.1764_0.4007.png
                gene_name: QSOX2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 68 percent done.
R3HDML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
R3HDML   10000 perm   1 sec   (6884 perm/sec)   p_kst 4.096000e-01   p_cons 2.100000e-02   p_joint 5.110000e-02

Joint ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
Cons ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
KS ci ratio: 3.319644e-02	ci left: 4.039202e-01	ci right 4.176058e-01	k: 8215	n:20000
R3HDML   20000 perm   3 sec   (6140 perm/sec)   p_kst 4.107500e-01   p_cons 1.950000e-02   p_joint 6.875000e-02

Joint ci ratio: 6.758306e-02	ci left: 9.741531e-02	ci right 1.042622e-01	k: 3024	n:30000
Cons ci ratio: 1.523175e-01	ci left: 1.995267e-02	ci right 2.327421e-02	k: 647	n:30000
KS ci ratio: 2.711589e-02	ci left: 4.049922e-01	ci right 4.161585e-01	k: 12317	n:30000
R3HDML   30000 perm   5 sec   (5823 perm/sec)   p_kst 4.105667e-01   p_cons 2.156667e-02   p_joint 1.008000e-01

Joint ci ratio: 6.147335e-02	ci left: 8.943131e-02	ci right 9.512804e-02	k: 3690	n:40000
Cons ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
KS ci ratio: 2.339711e-02	ci left: 4.075200e-01	ci right 4.171928e-01	k: 16494	n:40000
R3HDML   40000 perm   7 sec   (5620 perm/sec)   p_kst 4.123500e-01   p_cons 2.172500e-02   p_joint 9.225000e-02

Joint ci ratio: 9.422019e-02	ci left: 3.188130e-02	ci right 3.505317e-02	k: 1672	n:50000
Cons ci ratio: 1.230916e-01	ci left: 1.865502e-02	ci right 2.112117e-02	k: 993	n:50000
KS ci ratio: 2.085612e-02	ci left: 4.096778e-01	ci right 4.183322e-01	k: 20700	n:50000
R3HDML   50000 perm   9 sec   (5455 perm/sec)   p_kst 4.140000e-01   p_cons 1.986000e-02   p_joint 3.344000e-02

Joint ci ratio: 9.213890e-02	ci left: 2.793246e-02	ci right 3.064666e-02	k: 1756	n:60000
Cons ci ratio: 1.125017e-01	ci left: 1.871643e-02	ci right 2.096368e-02	k: 1189	n:60000
KS ci ratio: 1.901163e-02	ci left: 4.107538e-01	ci right 4.186545e-01	k: 24882	n:60000
R3HDML   60000 perm   11 sec   (5324 perm/sec)   p_kst 4.147000e-01   p_cons 1.981667e-02   p_joint 2.926667e-02

Joint ci ratio: 5.212917e-02	ci left: 7.279114e-02	ci right 7.670134e-02	k: 5231	n:70000
Cons ci ratio: 1.006730e-01	ci left: 2.013168e-02	ci right 2.227969e-02	k: 1483	n:70000
KS ci ratio: 1.761386e-02	ci left: 4.107044e-01	ci right 4.180170e-01	k: 29005	n:70000
R3HDML   70000 perm   13 sec   (5204 perm/sec)   p_kst 4.143571e-01   p_cons 2.118571e-02   p_joint 7.472857e-02

Joint ci ratio: 3.793626e-02	ci left: 1.155118e-01	ci right 1.199910e-01	k: 9419	n:80000
Cons ci ratio: 9.341421e-02	ci left: 2.053047e-02	ci right 2.255443e-02	k: 1722	n:80000
KS ci ratio: 1.647231e-02	ci left: 4.110582e-01	ci right 4.178980e-01	k: 33158	n:80000
R3HDML   80000 perm   16 sec   (5088 perm/sec)   p_kst 4.144750e-01   p_cons 2.152500e-02   p_joint 1.177375e-01

Outputting figure to mutsig2_images.part000000000141/R3HDML.4_782_80000_0.41447_0.021525_0.11774.png
                gene_name: R3HDML
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 70 percent done.
PURB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
Cons ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
KS ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
PURB   10000 perm   1 sec   (7232 perm/sec)   p_kst 8.867000e-01   p_cons 2.507000e-01   p_joint 8.548000e-01

Outputting figure to mutsig2_images.part000000000141/PURB.3_943_10000_0.8867_0.2507_0.8548.png
                gene_name: PURB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 72 percent done.
PUS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
Cons ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
KS ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
PUS3   10000 perm   1 sec   (6893 perm/sec)   p_kst 1.539000e-01   p_cons 3.364000e-01   p_joint 2.574000e-01

Outputting figure to mutsig2_images.part000000000141/PUS3.3_1458_10000_0.1539_0.3364_0.2574.png
                gene_name: PUS3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
PVRIG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
PVRIG   10000 perm   1 sec   (7183 perm/sec)   p_kst 2.591000e-01   p_cons 3.200000e-03   p_joint 8.400000e-03

Joint ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
Cons ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
KS ci ratio: 4.675635e-02	ci left: 2.539312e-01	ci right 2.661387e-01	k: 5200	n:20000
PVRIG   20000 perm   3 sec   (6333 perm/sec)   p_kst 2.600000e-01   p_cons 3.650000e-03   p_joint 2.990000e-02

Joint ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
Cons ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
KS ci ratio: 3.842105e-02	ci left: 2.526253e-01	ci right 2.625550e-01	k: 7727	n:30000
PVRIG   30000 perm   5 sec   (6024 perm/sec)   p_kst 2.575667e-01   p_cons 3.466667e-03   p_joint 1.846667e-02

Joint ci ratio: 1.672317e-01	ci left: 1.241596e-02	ci right 1.470546e-02	k: 541	n:40000
Cons ci ratio: 3.319077e-01	ci left: 2.899187e-03	ci right 4.074717e-03	k: 138	n:40000
KS ci ratio: 3.326061e-02	ci left: 2.534439e-01	ci right 2.620413e-01	k: 10309	n:40000
PVRIG   40000 perm   7 sec   (5797 perm/sec)   p_kst 2.577250e-01   p_cons 3.450000e-03   p_joint 1.352500e-02

Joint ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
Cons ci ratio: 2.900375e-01	ci left: 3.112579e-03	ci right 4.186319e-03	k: 181	n:50000
KS ci ratio: 2.974066e-02	ci left: 2.540098e-01	ci right 2.616983e-01	k: 12892	n:50000
PVRIG   50000 perm   9 sec   (5627 perm/sec)   p_kst 2.578400e-01   p_cons 3.620000e-03   p_joint 7.980000e-03

Joint ci ratio: 2.051216e-01	ci left: 5.429353e-03	ci right 6.685813e-03	k: 362	n:60000
Cons ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
KS ci ratio: 2.732621e-02	ci left: 2.518810e-01	ci right 2.588760e-01	k: 15322	n:60000
PVRIG   60000 perm   11 sec   (5481 perm/sec)   p_kst 2.553667e-01   p_cons 3.400000e-03   p_joint 6.033333e-03

Joint ci ratio: 2.063570e-01	ci left: 4.599324e-03	ci right 5.670900e-03	k: 358	n:70000
Cons ci ratio: 2.479759e-01	ci left: 3.116247e-03	ci right 4.011396e-03	k: 248	n:70000
KS ci ratio: 2.532183e-02	ci left: 2.518027e-01	ci right 2.582748e-01	k: 17852	n:70000
PVRIG   70000 perm   13 sec   (5363 perm/sec)   p_kst 2.550286e-01   p_cons 3.542857e-03   p_joint 5.114286e-03

Joint ci ratio: 1.960012e-01	ci left: 4.487337e-03	ci right 5.474088e-03	k: 397	n:80000
Cons ci ratio: 2.338530e-01	ci left: 3.090837e-03	ci right 3.920812e-03	k: 279	n:80000
KS ci ratio: 2.365173e-02	ci left: 2.525676e-01	ci right 2.586252e-01	k: 20447	n:80000
PVRIG   80000 perm   15 sec   (5250 perm/sec)   p_kst 2.555875e-01   p_cons 3.487500e-03   p_joint 4.962500e-03

Joint ci ratio: 1.908285e-01	ci left: 4.221295e-03	ci right 5.122199e-03	k: 419	n:90000
Cons ci ratio: 2.215401e-01	ci left: 3.082696e-03	ci right 3.860960e-03	k: 311	n:90000
KS ci ratio: 2.237617e-02	ci left: 2.514353e-01	ci right 2.571361e-01	k: 22885	n:90000
PVRIG   90000 perm   17 sec   (5144 perm/sec)   p_kst 2.542778e-01   p_cons 3.455556e-03   p_joint 4.655556e-03

Joint ci ratio: 1.509339e-01	ci left: 6.194104e-03	ci right 7.214825e-03	k: 669	n:100000
Cons ci ratio: 2.116055e-01	ci left: 3.058156e-03	ci right 3.791113e-03	k: 341	n:100000
KS ci ratio: 2.125810e-02	ci left: 2.510451e-01	ci right 2.564492e-01	k: 25374	n:100000
PVRIG   100000 perm   20 sec   (5040 perm/sec)   p_kst 2.537400e-01   p_cons 3.410000e-03   p_joint 6.690000e-03

Joint ci ratio: 1.661242e-01	ci left: 4.617872e-03	ci right 5.463094e-03	k: 553	n:110000
Cons ci ratio: 2.012754e-01	ci left: 3.090509e-03	ci right 3.790620e-03	k: 377	n:110000
KS ci ratio: 2.028658e-02	ci left: 2.508407e-01	ci right 2.559905e-01	k: 27875	n:110000
PVRIG   110000 perm   22 sec   (4942 perm/sec)   p_kst 2.534091e-01   p_cons 3.427273e-03   p_joint 5.027273e-03

Joint ci ratio: 1.702197e-01	ci left: 4.025395e-03	ci right 4.782197e-03	k: 527	n:120000
Cons ci ratio: 1.923241e-01	ci left: 3.118195e-03	ci right 3.789488e-03	k: 413	n:120000
KS ci ratio: 1.942215e-02	ci left: 2.509658e-01	ci right 2.558961e-01	k: 30411	n:120000
PVRIG   120000 perm   25 sec   (4850 perm/sec)   p_kst 2.534250e-01   p_cons 3.441667e-03   p_joint 4.391667e-03

Joint ci ratio: 1.635418e-01	ci left: 4.040080e-03	ci right 4.766914e-03	k: 571	n:130000
Cons ci ratio: 1.826459e-01	ci left: 3.208263e-03	ci right 3.860346e-03	k: 458	n:130000
KS ci ratio: 1.868692e-02	ci left: 2.505235e-01	ci right 2.552568e-01	k: 32875	n:130000
PVRIG   130000 perm   27 sec   (4760 perm/sec)   p_kst 2.528846e-01   p_cons 3.523077e-03   p_joint 4.392308e-03

Joint ci ratio: 1.662144e-01	ci left: 3.628172e-03	ci right 4.292632e-03	k: 553	n:140000
Cons ci ratio: 1.764158e-01	ci left: 3.204224e-03	ci right 3.830902e-03	k: 491	n:140000
KS ci ratio: 1.801395e-02	ci left: 2.504680e-01	ci right 2.550280e-01	k: 35384	n:140000
PVRIG   140000 perm   30 sec   (4674 perm/sec)   p_kst 2.527429e-01   p_cons 3.507143e-03   p_joint 3.950000e-03

Joint ci ratio: 1.760779e-01	ci left: 3.003326e-03	ci right 3.589466e-03	k: 493	n:150000
Cons ci ratio: 1.701334e-01	ci left: 3.226583e-03	ci right 3.832857e-03	k: 528	n:150000
KS ci ratio: 1.738641e-02	ci left: 2.509078e-01	ci right 2.553151e-01	k: 37966	n:150000
PVRIG   150000 perm   33 sec   (4592 perm/sec)   p_kst 2.531067e-01   p_cons 3.520000e-03   p_joint 3.286667e-03

Joint ci ratio: 1.716233e-01	ci left: 2.971044e-03	ci right 3.534694e-03	k: 519	n:160000
Cons ci ratio: 1.650640e-01	ci left: 3.222521e-03	ci right 3.808197e-03	k: 561	n:160000
KS ci ratio: 1.684326e-02	ci left: 2.507777e-01	ci right 2.550437e-01	k: 40465	n:160000
PVRIG   160000 perm   35 sec   (4515 perm/sec)   p_kst 2.529062e-01   p_cons 3.506250e-03   p_joint 3.243750e-03

Joint ci ratio: 1.532239e-01	ci left: 3.541359e-03	ci right 4.134583e-03	k: 651	n:170000
Cons ci ratio: 1.601525e-01	ci left: 3.230467e-03	ci right 3.798437e-03	k: 596	n:170000
KS ci ratio: 1.633353e-02	ci left: 2.509993e-01	ci right 2.551386e-01	k: 43021	n:170000
PVRIG   170000 perm   38 sec   (4439 perm/sec)   p_kst 2.530647e-01   p_cons 3.505882e-03   p_joint 3.829412e-03

Joint ci ratio: 1.507094e-01	ci left: 3.462181e-03	ci right 4.031764e-03	k: 673	n:180000
Cons ci ratio: 1.564016e-01	ci left: 3.205724e-03	ci right 3.754904e-03	k: 625	n:180000
KS ci ratio: 1.588261e-02	ci left: 2.508378e-01	ci right 2.548591e-01	k: 45512	n:180000
PVRIG   180000 perm   41 sec   (4366 perm/sec)   p_kst 2.528444e-01   p_cons 3.472222e-03   p_joint 3.738889e-03

Joint ci ratio: 1.464260e-01	ci left: 3.482664e-03	ci right 4.037909e-03	k: 713	n:190000
Cons ci ratio: 1.526687e-01	ci left: 3.193849e-03	ci right 3.726741e-03	k: 656	n:190000
KS ci ratio: 1.545889e-02	ci left: 2.508942e-01	ci right 2.548081e-01	k: 48041	n:190000
PVRIG   190000 perm   44 sec   (4297 perm/sec)   p_kst 2.528474e-01   p_cons 3.452632e-03   p_joint 3.752632e-03

Joint ci ratio: 1.322297e-01	ci left: 4.085620e-03	ci right 4.668889e-03	k: 874	n:200000
Cons ci ratio: 1.491910e-01	ci left: 3.183302e-03	ci right 3.701255e-03	k: 687	n:200000
KS ci ratio: 1.506916e-02	ci left: 2.509013e-01	ci right 2.547158e-01	k: 50561	n:200000
PVRIG   200000 perm   47 sec   (4227 perm/sec)   p_kst 2.528050e-01   p_cons 3.435000e-03   p_joint 4.370000e-03

Joint ci ratio: 1.278430e-01	ci left: 4.172107e-03	ci right 4.746465e-03	k: 935	n:210000
Cons ci ratio: 1.448330e-01	ci left: 3.224365e-03	ci right 3.732350e-03	k: 729	n:210000
KS ci ratio: 1.470194e-02	ci left: 2.510514e-01	ci right 2.547744e-01	k: 53111	n:210000
PVRIG   210000 perm   50 sec   (4160 perm/sec)   p_kst 2.529095e-01   p_cons 3.471429e-03   p_joint 4.452381e-03

Joint ci ratio: 9.274642e-02	ci left: 7.680816e-03	ci right 8.432233e-03	k: 1771	n:220000
Cons ci ratio: 1.257158e-01	ci left: 4.123300e-03	ci right 4.680790e-03	k: 967	n:220000
KS ci ratio: 1.436481e-02	ci left: 2.510710e-01	ci right 2.547082e-01	k: 55635	n:220000
PVRIG   220000 perm   54 sec   (4095 perm/sec)   p_kst 2.528864e-01   p_cons 4.395455e-03   p_joint 8.050000e-03

Joint ci ratio: 1.005129e-01	ci left: 6.239225e-03	ci right 6.903737e-03	k: 1510	n:230000
Cons ci ratio: 1.235053e-01	ci left: 4.091453e-03	ci right 4.634198e-03	k: 1002	n:230000
KS ci ratio: 1.404937e-02	ci left: 2.511028e-01	ci right 2.546599e-01	k: 58162	n:230000
PVRIG   230000 perm   57 sec   (4031 perm/sec)   p_kst 2.528783e-01   p_cons 4.356522e-03   p_joint 6.565217e-03

Joint ci ratio: 9.953713e-02	ci left: 6.101108e-03	ci right 6.744232e-03	k: 1540	n:240000
Cons ci ratio: 1.209984e-01	ci left: 4.090624e-03	ci right 4.621456e-03	k: 1044	n:240000
KS ci ratio: 1.374959e-02	ci left: 2.512492e-01	ci right 2.547318e-01	k: 60717	n:240000
PVRIG   240000 perm   60 sec   (3971 perm/sec)   p_kst 2.529875e-01   p_cons 4.350000e-03   p_joint 6.416667e-03

Joint ci ratio: 1.002727e-01	ci left: 5.771214e-03	ci right 6.384322e-03	k: 1518	n:250000
Cons ci ratio: 1.183106e-01	ci left: 4.113255e-03	ci right 4.634338e-03	k: 1092	n:250000
KS ci ratio: 1.347763e-02	ci left: 2.511212e-01	ci right 2.545326e-01	k: 63206	n:250000
PVRIG   250000 perm   64 sec   (3912 perm/sec)   p_kst 2.528240e-01   p_cons 4.368000e-03   p_joint 6.072000e-03

Joint ci ratio: 1.038149e-01	ci left: 5.170610e-03	ci right 5.740500e-03	k: 1417	n:260000
Cons ci ratio: 1.160500e-01	ci left: 4.115590e-03	ci right 4.626324e-03	k: 1135	n:260000
KS ci ratio: 1.321177e-02	ci left: 2.512723e-01	ci right 2.546179e-01	k: 65765	n:260000
PVRIG   260000 perm   67 sec   (3853 perm/sec)   p_kst 2.529423e-01   p_cons 4.365385e-03   p_joint 5.450000e-03

Joint ci ratio: 9.265838e-02	ci left: 6.279939e-03	ci right 6.893687e-03	k: 1777	n:270000
Cons ci ratio: 1.141088e-01	ci left: 4.103446e-03	ci right 4.603581e-03	k: 1174	n:270000
KS ci ratio: 1.297045e-02	ci left: 2.511393e-01	ci right 2.544216e-01	k: 68250	n:270000
PVRIG   270000 perm   71 sec   (3797 perm/sec)   p_kst 2.527778e-01   p_cons 4.348148e-03   p_joint 6.581481e-03

Joint ci ratio: 9.282711e-02	ci left: 6.034689e-03	ci right 6.625599e-03	k: 1771	n:280000
Cons ci ratio: 1.116630e-01	ci left: 4.137369e-03	ci right 4.630119e-03	k: 1226	n:280000
KS ci ratio: 1.273659e-02	ci left: 2.511731e-01	ci right 2.543963e-01	k: 70779	n:280000
PVRIG   280000 perm   75 sec   (3745 perm/sec)   p_kst 2.527821e-01   p_cons 4.378571e-03   p_joint 6.325000e-03

Joint ci ratio: 1.004148e-01	ci left: 4.964995e-03	ci right 5.493242e-03	k: 1515	n:290000
Cons ci ratio: 1.096698e-01	ci left: 4.145579e-03	ci right 4.629924e-03	k: 1271	n:290000
KS ci ratio: 1.256471e-02	ci left: 2.497117e-01	ci right 2.528725e-01	k: 72874	n:290000
PVRIG   290000 perm   78 sec   (3695 perm/sec)   p_kst 2.512897e-01   p_cons 4.382759e-03   p_joint 5.224138e-03

Joint ci ratio: 1.041856e-01	ci left: 4.451890e-03	ci right 4.944420e-03	k: 1408	n:300000
Cons ci ratio: 1.079032e-01	ci left: 4.143584e-03	ci right 4.619402e-03	k: 1313	n:300000
KS ci ratio: 1.236074e-02	ci left: 2.495191e-01	ci right 2.526258e-01	k: 75321	n:300000
PVRIG   300000 perm   82 sec   (3647 perm/sec)   p_kst 2.510700e-01   p_cons 4.376667e-03   p_joint 4.693333e-03

Joint ci ratio: 9.839781e-02	ci left: 4.842831e-03	ci right 5.347134e-03	k: 1578	n:310000
Cons ci ratio: 1.063770e-01	ci left: 4.129214e-03	ci right 4.596255e-03	k: 1351	n:310000
KS ci ratio: 1.215930e-02	ci left: 2.495581e-01	ci right 2.526143e-01	k: 77836	n:310000
PVRIG   310000 perm   86 sec   (3601 perm/sec)   p_kst 2.510839e-01   p_cons 4.358065e-03   p_joint 5.090323e-03

Joint ci ratio: 9.862562e-02	ci left: 4.670136e-03	ci right 5.157646e-03	k: 1571	n:320000
Cons ci ratio: 1.046871e-01	ci left: 4.134047e-03	ci right 4.593750e-03	k: 1395	n:320000
KS ci ratio: 1.196560e-02	ci left: 2.496512e-01	ci right 2.526595e-01	k: 80369	n:320000
PVRIG   320000 perm   90 sec   (3556 perm/sec)   p_kst 2.511531e-01   p_cons 4.359375e-03   p_joint 4.909375e-03

Joint ci ratio: 9.715369e-02	ci left: 4.670511e-03	ci right 5.150368e-03	k: 1619	n:330000
Cons ci ratio: 1.031833e-01	ci left: 4.129785e-03	ci right 4.582017e-03	k: 1436	n:330000
KS ci ratio: 1.178609e-02	ci left: 2.495727e-01	ci right 2.525347e-01	k: 82847	n:330000
PVRIG   330000 perm   94 sec   (3512 perm/sec)   p_kst 2.510515e-01   p_cons 4.351515e-03   p_joint 4.906061e-03

Joint ci ratio: 9.298485e-02	ci left: 4.958125e-03	ci right 5.444485e-03	k: 1767	n:340000
Cons ci ratio: 1.018117e-01	ci left: 4.120085e-03	ci right 4.564899e-03	k: 1475	n:340000
KS ci ratio: 1.161471e-02	ci left: 2.494904e-01	ci right 2.524080e-01	k: 85322	n:340000
PVRIG   340000 perm   98 sec   (3469 perm/sec)   p_kst 2.509471e-01   p_cons 4.338235e-03   p_joint 5.197059e-03

Joint ci ratio: 9.167219e-02	ci left: 4.958814e-03	ci right 5.438006e-03	k: 1818	n:350000
Cons ci ratio: 1.004268e-01	ci left: 4.116548e-03	ci right 4.554578e-03	k: 1516	n:350000
KS ci ratio: 1.144136e-02	ci left: 2.497153e-01	ci right 2.525917e-01	k: 87903	n:350000
PVRIG   350000 perm   102 sec   (3425 perm/sec)   p_kst 2.511514e-01   p_cons 4.331429e-03   p_joint 5.194286e-03

Joint ci ratio: 8.695205e-02	ci left: 5.369703e-03	ci right 5.860528e-03	k: 2020	n:360000
Cons ci ratio: 9.893755e-02	ci left: 4.126793e-03	ci right 4.559023e-03	k: 1562	n:360000
KS ci ratio: 1.128088e-02	ci left: 2.497506e-01	ci right 2.525867e-01	k: 90420	n:360000
PVRIG   360000 perm   106 sec   (3381 perm/sec)   p_kst 2.511667e-01   p_cons 4.338889e-03   p_joint 5.611111e-03

Outputting figure to mutsig2_images.part000000000141/PVRIG.3_1001_360000_0.25117_0.0043389_0.0056111.png
                gene_name: PVRIG
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.0043 
      ci_cons_bounds_left: 0.0041 
     ci_cons_bounds_right: 0.0046 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0059 

Current progress: 75 percent done.
PVRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
KS ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
PVRL4   10000 perm   1 sec   (6963 perm/sec)   p_kst 9.089000e-01   p_cons 2.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PVRL4.3_1569_10000_0.9089_0.2735_1.png
                gene_name: PVRL4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PXMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
KS ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
PXMP4   10000 perm   1 sec   (7532 perm/sec)   p_kst 8.411000e-01   p_cons 6.932000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PXMP4.3_655_10000_0.8411_0.6932_1.png
                gene_name: PXMP4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
PYDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
Cons ci ratio: 4.094934e-03	ci left: 9.870846e-01	ci right 9.912230e-01	k: 9893	n:10000
KS ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
PYDC2   10000 perm   1 sec   (7924 perm/sec)   p_kst 1.963000e-01   p_cons 9.893000e-01   p_joint 2.370000e-01

Outputting figure to mutsig2_images.part000000000141/PYDC2.3_296_10000_0.1963_0.9893_0.237.png
                gene_name: PYDC2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 81 percent done.
PYGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
Cons ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
KS ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
PYGL   10000 perm   2 sec   (6348 perm/sec)   p_kst 2.826000e-01   p_cons 7.279000e-01   p_joint 4.515000e-01

Outputting figure to mutsig2_images.part000000000141/PYGL.3_2624_10000_0.2826_0.7279_0.4515.png
                gene_name: PYGL
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 83 percent done.
PTTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
Cons ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
KS ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
PTTG2   10000 perm   1 sec   (8005 perm/sec)   p_kst 1.505000e-01   p_cons 6.280000e-02   p_joint 2.380000e-02

Joint ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
Cons ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
KS ci ratio: 6.500385e-02	ci left: 1.488258e-01	ci right 1.588750e-01	k: 3076	n:20000
PTTG2   20000 perm   3 sec   (6986 perm/sec)   p_kst 1.538000e-01   p_cons 6.160000e-02   p_joint 2.335000e-02

Joint ci ratio: 5.109781e-02	ci left: 1.597930e-01	ci right 1.682055e-01	k: 4919	n:30000
Cons ci ratio: 7.438172e-02	ci left: 8.157293e-02	ci right 8.790776e-02	k: 2541	n:30000
KS ci ratio: 5.313354e-02	ci left: 1.494710e-01	ci right 1.576629e-01	k: 4606	n:30000
PTTG2   30000 perm   5 sec   (6602 perm/sec)   p_kst 1.535333e-01   p_cons 8.470000e-02   p_joint 1.639667e-01

Outputting figure to mutsig2_images.part000000000141/PTTG2.2_579_30000_0.15353_0.0847_0.16397.png
                gene_name: PTTG2
               theta_stop: 0.074 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 85 percent done.
PTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
PTX3   10000 perm   1 sec   (7506 perm/sec)   p_kst 2.184000e-01   p_cons 2.087000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000141/PTX3.2_1158_10000_0.2184_0.2087_0.2488.png
                gene_name: PTX3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 87 percent done.
PWP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
Cons ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
KS ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
PWP1   10000 perm   1 sec   (7338 perm/sec)   p_kst 8.740000e-02   p_cons 8.770000e-02   p_joint 9.578000e-01

Joint ci ratio: 1.421378e-02	ci left: 7.861057e-01	ci right 7.974093e-01	k: 15836	n:20000
Cons ci ratio: 9.030463e-02	ci left: 8.219878e-02	ci right 9.002205e-02	k: 1721	n:20000
KS ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
PWP1   20000 perm   3 sec   (6484 perm/sec)   p_kst 8.700000e-02   p_cons 8.605000e-02   p_joint 7.918000e-01

Outputting figure to mutsig2_images.part000000000141/PWP1.2_1566_20000_0.087_0.08605_0.7918.png
                gene_name: PWP1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 89 percent done.
QARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
KS ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
QARS   10000 perm   1 sec   (6903 perm/sec)   p_kst 5.570000e-01   p_cons 6.539000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/QARS.2_2424_10000_0.557_0.6539_1.png
                gene_name: QARS
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
QKI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
Cons ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
KS ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
QKI   10000 perm   1 sec   (7503 perm/sec)   p_kst 4.750000e-02   p_cons 4.877000e-01   p_joint 1.299000e-01

Joint ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
Cons ci ratio: 2.827644e-02	ci left: 4.830487e-01	ci right 4.969542e-01	k: 9800	n:20000
KS ci ratio: 1.199386e-01	ci left: 4.765147e-02	ci right 5.377999e-02	k: 1013	n:20000
QKI   20000 perm   3 sec   (6637 perm/sec)   p_kst 5.065000e-02   p_cons 4.900000e-01   p_joint 1.198500e-01

Joint ci ratio: 4.269338e-02	ci left: 2.146616e-01	ci right 2.240595e-01	k: 6580	n:30000
Cons ci ratio: 2.290573e-02	ci left: 4.882933e-01	ci right 4.996412e-01	k: 14819	n:30000
KS ci ratio: 9.745865e-02	ci left: 4.866769e-02	ci right 5.368635e-02	k: 1534	n:30000
QKI   30000 perm   5 sec   (6270 perm/sec)   p_kst 5.113333e-02   p_cons 4.939667e-01   p_joint 2.193333e-01

Outputting figure to mutsig2_images.part000000000141/QKI.2_1162_30000_0.051133_0.49397_0.21933.png
                gene_name: QKI
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 92 percent done.
QPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
KS ci ratio: 1.958236e-02	ci left: 7.923276e-01	ci right 8.080971e-01	k: 8003	n:10000
QPRT   10000 perm   1 sec   (7771 perm/sec)   p_kst 8.003000e-01   p_cons 7.950000e-02   p_joint 1.284000e-01

Joint ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
Cons ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
KS ci ratio: 1.379457e-02	ci left: 7.959034e-01	ci right 8.070088e-01	k: 16030	n:20000
QPRT   20000 perm   3 sec   (6821 perm/sec)   p_kst 8.015000e-01   p_cons 8.060000e-02   p_joint 1.172500e-01

Outputting figure to mutsig2_images.part000000000141/QPRT.2_910_20000_0.8015_0.0806_0.11725.png
                gene_name: QPRT
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 94 percent done.
QRSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
QRSL1   10000 perm   1 sec   (7605 perm/sec)   p_kst 9.207000e-01   p_cons 8.933000e-01   p_joint 9.295000e-01

Outputting figure to mutsig2_images.part000000000141/QRSL1.2_1631_10000_0.9207_0.8933_0.9295.png
                gene_name: QRSL1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 96 percent done.
QTRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
Cons ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
KS ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
QTRT1   10000 perm   1 sec   (7828 perm/sec)   p_kst 2.032000e-01   p_cons 1.152000e-01   p_joint 8.126000e-01

Joint ci ratio: 2.684073e-02	ci left: 5.090971e-01	ci right 5.229982e-01	k: 10321	n:20000
Cons ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
KS ci ratio: 5.509237e-02	ci left: 1.964048e-01	ci right 2.075819e-01	k: 4039	n:20000
QTRT1   20000 perm   3 sec   (6846 perm/sec)   p_kst 2.019500e-01   p_cons 1.140500e-01   p_joint 5.160500e-01

Outputting figure to mutsig2_images.part000000000141/QTRT1.2_1252_20000_0.20195_0.11405_0.51605.png
                gene_name: QTRT1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 98 percent done.
QTRTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
QTRTD1   10000 perm   1 sec   (7392 perm/sec)   p_kst 3.925000e-01   p_cons 2.000000e-02   p_joint 2.630000e-02

Joint ci ratio: 5.181454e-02	ci left: 2.167018e-01	ci right 2.282790e-01	k: 4449	n:20000
Cons ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
KS ci ratio: 3.464075e-02	ci left: 3.835307e-01	ci right 3.971012e-01	k: 7806	n:20000
QTRTD1   20000 perm   3 sec   (6540 perm/sec)   p_kst 3.903000e-01   p_cons 1.935000e-02   p_joint 2.224500e-01

Joint ci ratio: 5.418669e-02	ci left: 1.444936e-01	ci right 1.525745e-01	k: 4455	n:30000
Cons ci ratio: 1.629124e-01	ci left: 1.738915e-02	ci right 2.050500e-02	k: 567	n:30000
KS ci ratio: 2.827508e-02	ci left: 3.849403e-01	ci right 3.960142e-01	k: 11714	n:30000
QTRTD1   30000 perm   5 sec   (6194 perm/sec)   p_kst 3.904667e-01   p_cons 1.890000e-02   p_joint 1.485000e-01

Joint ci ratio: 7.108616e-02	ci left: 6.813305e-02	ci right 7.317950e-02	k: 2825	n:40000
Cons ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
KS ci ratio: 2.447791e-02	ci left: 3.858643e-01	ci right 3.954516e-01	k: 15626	n:40000
QTRTD1   40000 perm   7 sec   (5975 perm/sec)   p_kst 3.906500e-01   p_cons 1.870000e-02   p_joint 7.062500e-02

Joint ci ratio: 6.264669e-02	ci left: 7.034047e-02	ci right 7.490930e-02	k: 3630	n:50000
Cons ci ratio: 1.276195e-01	ci left: 1.733690e-02	ci right 1.971947e-02	k: 925	n:50000
KS ci ratio: 2.190082e-02	ci left: 3.862202e-01	ci right 3.947925e-01	k: 19525	n:50000
QTRTD1   50000 perm   9 sec   (5772 perm/sec)   p_kst 3.905000e-01   p_cons 1.850000e-02   p_joint 7.260000e-02

Joint ci ratio: 7.289285e-02	ci left: 4.430471e-02	ci right 4.767272e-02	k: 2758	n:60000
Cons ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
KS ci ratio: 1.992432e-02	ci left: 3.882237e-01	ci right 3.960534e-01	k: 23528	n:60000
QTRTD1   60000 perm   11 sec   (5623 perm/sec)   p_kst 3.921333e-01   p_cons 1.850000e-02   p_joint 4.596667e-02

Joint ci ratio: 9.109516e-02	ci left: 2.459619e-02	ci right 2.695762e-02	k: 1803	n:70000
Cons ci ratio: 1.081735e-01	ci left: 1.741728e-02	ci right 1.942292e-02	k: 1288	n:70000
KS ci ratio: 1.843998e-02	ci left: 3.886803e-01	ci right 3.959286e-01	k: 27461	n:70000
QTRTD1   70000 perm   13 sec   (5478 perm/sec)   p_kst 3.923000e-01   p_cons 1.840000e-02   p_joint 2.575714e-02

Joint ci ratio: 6.381821e-02	ci left: 4.359837e-02	ci right 4.648474e-02	k: 3602	n:80000
Cons ci ratio: 1.006711e-01	ci left: 1.766282e-02	ci right 1.954732e-02	k: 1487	n:80000
KS ci ratio: 1.727262e-02	ci left: 3.882653e-01	ci right 3.950426e-01	k: 31332	n:80000
QTRTD1   80000 perm   15 sec   (5355 perm/sec)   p_kst 3.916500e-01   p_cons 1.858750e-02   p_joint 4.502500e-02

Joint ci ratio: 8.229755e-02	ci left: 2.357600e-02	ci right 2.561035e-02	k: 2212	n:90000
Cons ci ratio: 9.555553e-02	ci left: 1.747772e-02	ci right 1.924240e-02	k: 1651	n:90000
KS ci ratio: 1.629603e-02	ci left: 3.881317e-01	ci right 3.945197e-01	k: 35219	n:90000
QTRTD1   90000 perm   17 sec   (5243 perm/sec)   p_kst 3.913222e-01   p_cons 1.834444e-02   p_joint 2.457778e-02

Outputting figure to mutsig2_images.part000000000141/QTRTD1.2_1280_90000_0.39132_0.018344_0.024578.png
                gene_name: QTRTD1
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000141
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 141 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422355: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000142> was used as the working directory.
Started at Wed Oct 24 18:05:09 2012
Results reported at Wed Oct 24 18:11:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000142.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000142.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 142  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000142.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    371.81 sec.
    Max Memory :      5392 MB
    Max Swap   :      7687 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
142
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 142
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 142: processing genes 12757 - 12847
Calculating significance of each gene.
Using projection method.
12757	RAB11B	1
12758	RAB11FIP1	9.807991e-01
12759	RAB11FIP2	3.212836e-01
12760	RAB11FIP3	6.045674e-01
12761	RAB11FIP4	8.426567e-01
12762	RAB11FIP5	5.340944e-01
12763	RAB12	1
12764	RAB13	4.708048e-01
12765	RAB14	4.250289e-01
12766	RAB15	3.853935e-01
12767	RAB17	4.651549e-01
12768	RAB18	3.060009e-01
12769	RAB19	1
12770	RAB1A	1
12771	RAB1B	1
12772	RAB20	6.282489e-01
12773	RAB21	6.543508e-01
12774	RAB22A	4.865207e-01
12775	RAB23	1
12776	RAB24	1
12777	RAB25	7.396785e-01
12778	RAB26	5.476836e-01
12779	RAB27A	1
12780	RAB27B	2.778943e-01
12781	RAB28	2.601582e-01
12782	RAB2A	1.287027e-01
12783	RAB2B	4.715667e-01
12784	RAB30	5.331075e-03
12785	RAB31	1.318275e-01
12786	RAB32	1
12787	RAB33A	1
12788	RAB33B	1
12789	RAB34	5.283059e-01
12790	RAB35	1
12791	RAB36	1
12792	RAB37	1.513176e-01
12793	RAB38	2.353492e-01
12794	RAB39	5.275094e-01
12795	RAB39B	1
12796	RAB3A	1
12797	RAB3B	5.664762e-01
12798	RAB3C	1.181600e-01
12799	RAB3D	1
12800	RAB3GAP1	9.916095e-01
12801	RAB3GAP2	1
12802	RAB3IL1	4.490991e-01
12803	RAB3IP	2.524084e-01
12804	RAB40A	6.038743e-01
12805	RAB40AL	8.027692e-01
12806	RAB40B	6.706153e-01
12807	RAB40C	1
12808	RAB41	7.021498e-01
12809	RAB42	3.741381e-01
12810	RAB43	3.507705e-01
12811	RAB4A	2.767683e-01
12812	RAB4B	1
12813	RAB5A	6.688142e-01
12814	RAB5B	1
12815	RAB5C	3.496790e-01
12816	RAB6A	1
12817	RAB6B	1.895003e-01
12818	RAB6C	1
12819	RAB7A	7.694269e-01
12820	RAB7L1	4.092765e-01
12821	RAB8A	6.622026e-01
12822	RAB8B	5.184469e-01
12823	RAB9A	1
12824	RAB9B	8.462401e-03
12825	RABAC1	1
12826	RABEP1	7.425970e-01
12827	RABEP2	8.074842e-01
12828	RABEPK	2.351474e-01
12829	RABGAP1	9.926640e-01
12830	RABGAP1L	2.337926e-01
12831	RABGEF1	1
12832	RABGGTA	5.410440e-01
12833	RABGGTB	5.292492e-01
12834	RABIF	1
12835	RABL2A	1
12836	RABL2B	4.828860e-01
12837	RABL3	7.005066e-02
12838	RABL5	4.152504e-01
12839	RAC1	1
12840	RAC2	3.978358e-01
12841	RAC3	1
12842	RACGAP1	9.147441e-01
12843	RAD1	1.782462e-01
12844	RAD17	8.279611e-01
12845	RAD18	5.868802e-01
12846	RAD21	9.137645e-02
12847	RAD23A	8.957415e-01
Done

Running MutSig 2:
Scatter job 142: processing genes 12757 - 12847
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RAB11FIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
KS ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
RAB11FIP1   10000 perm   2 sec   (4443 perm/sec)   p_kst 6.497000e-01   p_cons 8.322000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB11FIP1.10_3876_10000_0.6497_0.8322_1.png
                gene_name: RAB11FIP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
RABGAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
Cons ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
KS ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
RABGAP1L   10000 perm   2 sec   (5160 perm/sec)   p_kst 4.720000e-01   p_cons 4.431000e-01   p_joint 5.937000e-01

Outputting figure to mutsig2_images.part000000000142/RABGAP1L.8_2643_10000_0.472_0.4431_0.5937.png
                gene_name: RABGAP1L
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
RAD21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
RAD21   10000 perm   2 sec   (5270 perm/sec)   p_kst 7.045000e-01   p_cons 7.170000e-02   p_joint 3.579000e-01

Joint ci ratio: 4.382288e-02	ci left: 2.794457e-01	ci right 2.920166e-01	k: 5714	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 1.806354e-02	ci left: 6.955065e-01	ci right 7.082347e-01	k: 14038	n:20000
RAD21   20000 perm   4 sec   (4863 perm/sec)   p_kst 7.019000e-01   p_cons 7.280000e-02   p_joint 2.857000e-01

Outputting figure to mutsig2_images.part000000000142/RAD21.8_1948_20000_0.7019_0.0728_0.2857.png
                gene_name: RAD21
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 7 percent done.
RAB3GAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471734e-02	ci left: 8.698917e-01	ci right 8.828882e-01	k: 8765	n:10000
Cons ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
KS ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
RAB3GAP2   10000 perm   2 sec   (5224 perm/sec)   p_kst 6.850000e-01   p_cons 8.480000e-01   p_joint 8.765000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3GAP2.7_4322_10000_0.685_0.848_0.8765.png
                gene_name: RAB3GAP2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 9 percent done.
RAB11FIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
RAB11FIP2   10000 perm   2 sec   (5963 perm/sec)   p_kst 4.556000e-01   p_cons 3.764000e-01   p_joint 7.245000e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP2.6_1559_10000_0.4556_0.3764_0.7245.png
                gene_name: RAB11FIP2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 12 percent done.
RAB9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
Cons ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
KS ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
RAB9B   10000 perm   2 sec   (6460 perm/sec)   p_kst 8.105000e-01   p_cons 4.430000e-02   p_joint 4.350000e-01

Joint ci ratio: 3.855910e-02	ci left: 3.340804e-01	ci right 3.472660e-01	k: 6813	n:20000
Cons ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
KS ci ratio: 1.316498e-02	ci left: 8.105085e-01	ci right 8.212995e-01	k: 16319	n:20000
RAB9B   20000 perm   3 sec   (5806 perm/sec)   p_kst 8.159500e-01   p_cons 4.465000e-02   p_joint 3.406500e-01

Joint ci ratio: 2.288588e-02	ci left: 4.887265e-01	ci right 5.000746e-01	k: 14832	n:30000
Cons ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
KS ci ratio: 1.105273e-02	ci left: 8.029250e-01	ci right 8.118821e-01	k: 24223	n:30000
RAB9B   30000 perm   6 sec   (5384 perm/sec)   p_kst 8.074333e-01   p_cons 4.493333e-02   p_joint 4.944000e-01

Joint ci ratio: 2.271780e-02	ci left: 4.218460e-01	ci right 4.315646e-01	k: 17068	n:40000
Cons ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
KS ci ratio: 9.656717e-03	ci left: 8.007553e-01	ci right 8.085504e-01	k: 32187	n:40000
RAB9B   40000 perm   8 sec   (5256 perm/sec)   p_kst 8.046750e-01   p_cons 4.477500e-02   p_joint 4.267000e-01

Outputting figure to mutsig2_images.part000000000142/RAB9B.6_610_40000_0.80468_0.044775_0.4267.png
                gene_name: RAB9B
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 14 percent done.
RAB11FIP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
RAB11FIP5   10000 perm   2 sec   (5451 perm/sec)   p_kst 4.064000e-01   p_cons 2.157000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP5.5_1982_10000_0.4064_0.2157_0.2918.png
                gene_name: RAB11FIP5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 16 percent done.
RAB30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
Cons ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
KS ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
RAB30   10000 perm   2 sec   (6108 perm/sec)   p_kst 5.254000e-01   p_cons 6.023000e-01   p_joint 6.160000e-01

Outputting figure to mutsig2_images.part000000000142/RAB30.5_628_10000_0.5254_0.6023_0.616.png
                gene_name: RAB30
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 19 percent done.
RAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
Cons ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
RAD1   10000 perm   2 sec   (6286 perm/sec)   p_kst 7.790000e-02   p_cons 1.244000e-01   p_joint 6.440000e-02

Joint ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
Cons ci ratio: 7.236256e-02	ci left: 1.233007e-01	ci right 1.326078e-01	k: 2558	n:20000
KS ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
RAD1   20000 perm   4 sec   (5694 perm/sec)   p_kst 7.890000e-02   p_cons 1.279000e-01   p_joint 4.825000e-02

Joint ci ratio: 8.328361e-02	ci left: 6.589562e-02	ci right 7.165490e-02	k: 2062	n:30000
Cons ci ratio: 5.946220e-02	ci left: 1.227581e-01	ci right 1.303144e-01	k: 3795	n:30000
KS ci ratio: 7.743416e-02	ci left: 7.564447e-02	ci right 8.177074e-02	k: 2360	n:30000
RAD1   30000 perm   5 sec   (5457 perm/sec)   p_kst 7.866667e-02   p_cons 1.265000e-01   p_joint 6.873333e-02

Outputting figure to mutsig2_images.part000000000142/RAD1.5_869_30000_0.078667_0.1265_0.068733.png
                gene_name: RAD1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.072 

Current progress: 21 percent done.
RAB37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
RAB37   10000 perm   2 sec   (6068 perm/sec)   p_kst 2.486000e-01   p_cons 2.194000e-01   p_joint 2.993000e-01

Outputting figure to mutsig2_images.part000000000142/RAB37.4_1011_10000_0.2486_0.2194_0.2993.png
                gene_name: RAB37
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 23 percent done.
RAB38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
KS ci ratio: 2.511240e-02	ci left: 6.999874e-01	ci right 7.178907e-01	k: 7090	n:10000
RAB38   10000 perm   1 sec   (6869 perm/sec)   p_kst 7.090000e-01   p_cons 9.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB38.4_648_10000_0.709_0.9599_1.png
                gene_name: RAB38
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
RAB3IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
RAB3IP   10000 perm   2 sec   (5968 perm/sec)   p_kst 9.507000e-01   p_cons 7.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB3IP.4_1475_10000_0.9507_0.7026_1.png
                gene_name: RAB3IP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
RAB5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
Cons ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
KS ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
RAB5C   10000 perm   1 sec   (6780 perm/sec)   p_kst 6.186000e-01   p_cons 7.720000e-02   p_joint 6.065000e-01

Joint ci ratio: 2.240529e-02	ci left: 5.979846e-01	ci right 6.115850e-01	k: 12096	n:20000
Cons ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
KS ci ratio: 2.180533e-02	ci left: 6.109235e-01	ci right 6.244423e-01	k: 12354	n:20000
RAB5C   20000 perm   3 sec   (6038 perm/sec)   p_kst 6.177000e-01   p_cons 7.525000e-02   p_joint 6.048000e-01

Outputting figure to mutsig2_images.part000000000142/RAB5C.4_671_20000_0.6177_0.07525_0.6048.png
                gene_name: RAB5C
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
RABGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
Cons ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
KS ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
RABGAP1   10000 perm   2 sec   (5721 perm/sec)   p_kst 4.877000e-01   p_cons 9.477000e-01   p_joint 7.473000e-01

Outputting figure to mutsig2_images.part000000000142/RABGAP1.4_3310_10000_0.4877_0.9477_0.7473.png
                gene_name: RABGAP1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 33 percent done.
RABL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
Cons ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
KS ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
RABL3   10000 perm   2 sec   (6447 perm/sec)   p_kst 1.034000e-01   p_cons 3.517000e-01   p_joint 2.341000e-01

Joint ci ratio: 8.030626e-02	ci left: 1.021590e-01	ci right 1.107558e-01	k: 2128	n:20000
Cons ci ratio: 3.784481e-02	ci left: 3.424909e-01	ci right 3.557530e-01	k: 6982	n:20000
KS ci ratio: 8.075267e-02	ci left: 1.011278e-01	ci right 1.096873e-01	k: 2107	n:20000
RABL3   20000 perm   3 sec   (5883 perm/sec)   p_kst 1.053500e-01   p_cons 3.491000e-01   p_joint 1.064000e-01

Outputting figure to mutsig2_images.part000000000142/RABL3.4_743_20000_0.10535_0.3491_0.1064.png
                gene_name: RABL3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
RAB11FIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
RAB11FIP3   10000 perm   2 sec   (6059 perm/sec)   p_kst 6.702000e-01   p_cons 4.050000e-02   p_joint 8.790000e-02

Joint ci ratio: 6.121368e-02	ci left: 1.649161e-01	ci right 1.753800e-01	k: 3402	n:20000
Cons ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
KS ci ratio: 1.938653e-02	ci left: 6.649413e-01	ci right 6.780088e-01	k: 13430	n:20000
RAB11FIP3   20000 perm   4 sec   (5411 perm/sec)   p_kst 6.715000e-01   p_cons 4.485000e-02   p_joint 1.701000e-01

Joint ci ratio: 4.999576e-02	ci left: 1.657978e-01	ci right 1.743328e-01	k: 5101	n:30000
Cons ci ratio: 1.041784e-01	ci left: 4.271417e-02	ci right 4.744110e-02	k: 1351	n:30000
KS ci ratio: 1.584956e-02	ci left: 6.655833e-01	ci right 6.762503e-01	k: 20128	n:30000
RAB11FIP3   30000 perm   6 sec   (5092 perm/sec)   p_kst 6.709333e-01   p_cons 4.503333e-02   p_joint 1.700333e-01

Joint ci ratio: 3.283996e-02	ci left: 2.583173e-01	ci right 2.669671e-01	k: 10505	n:40000
Cons ci ratio: 9.357813e-02	ci left: 4.005507e-02	ci right 4.401176e-02	k: 1680	n:40000
KS ci ratio: 1.367598e-02	ci left: 6.679262e-01	ci right 6.771487e-01	k: 26902	n:40000
RAB11FIP3   40000 perm   8 sec   (4965 perm/sec)   p_kst 6.725500e-01   p_cons 4.200000e-02   p_joint 2.626250e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP3.3_2346_40000_0.67255_0.042_0.26262.png
                gene_name: RAB11FIP3
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 37 percent done.
RAB2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
RAB2A   10000 perm   2 sec   (5829 perm/sec)   p_kst 2.623000e-01   p_cons 8.533000e-01   p_joint 4.128000e-01

Outputting figure to mutsig2_images.part000000000142/RAB2A.3_671_10000_0.2623_0.8533_0.4128.png
                gene_name: RAB2A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 40 percent done.
RAB3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
RAB3C   10000 perm   2 sec   (6476 perm/sec)   p_kst 2.710000e-01   p_cons 6.660000e-02   p_joint 2.395000e-01

Joint ci ratio: 4.804163e-02	ci left: 2.437130e-01	ci right 2.557599e-01	k: 4994	n:20000
Cons ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
KS ci ratio: 4.480938e-02	ci left: 2.705077e-01	ci right 2.829572e-01	k: 5534	n:20000
RAB3C   20000 perm   3 sec   (5908 perm/sec)   p_kst 2.767000e-01   p_cons 7.055000e-02   p_joint 2.497000e-01

Joint ci ratio: 4.107370e-02	ci left: 2.280933e-01	ci right 2.376918e-01	k: 6986	n:30000
Cons ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
KS ci ratio: 3.683049e-02	ci left: 2.690247e-01	ci right 2.791524e-01	k: 8222	n:30000
RAB3C   30000 perm   5 sec   (5681 perm/sec)   p_kst 2.740667e-01   p_cons 7.266667e-02   p_joint 2.328667e-01

Outputting figure to mutsig2_images.part000000000142/RAB3C.3_704_30000_0.27407_0.072667_0.23287.png
                gene_name: RAB3C
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 42 percent done.
RAB6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
KS ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
RAB6B   10000 perm   1 sec   (6799 perm/sec)   p_kst 9.565000e-01   p_cons 5.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB6B.3_659_10000_0.9565_0.5893_1.png
                gene_name: RAB6B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
RAB7L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
Cons ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
RAB7L1   10000 perm   1 sec   (6806 perm/sec)   p_kst 2.300000e-02   p_cons 1.688000e-01   p_joint 3.180000e-02

Joint ci ratio: 1.255857e-01	ci left: 4.352588e-02	ci right 4.940689e-02	k: 928	n:20000
Cons ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
KS ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
RAB7L1   20000 perm   3 sec   (5958 perm/sec)   p_kst 2.320000e-02   p_cons 1.681500e-01   p_joint 4.640000e-02

Joint ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
Cons ci ratio: 5.070996e-02	ci left: 1.618714e-01	ci right 1.703267e-01	k: 4982	n:30000
KS ci ratio: 1.480533e-01	ci left: 2.114060e-02	ci right 2.455267e-02	k: 684	n:30000
RAB7L1   30000 perm   5 sec   (5701 perm/sec)   p_kst 2.280000e-02   p_cons 1.660667e-01   p_joint 2.933333e-02

Joint ci ratio: 1.306041e-01	ci left: 2.058481e-02	ci right 2.348516e-02	k: 880	n:40000
Cons ci ratio: 4.377015e-02	ci left: 1.633567e-01	ci right 1.706917e-01	k: 6680	n:40000
KS ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
RAB7L1   40000 perm   7 sec   (5518 perm/sec)   p_kst 2.305000e-02   p_cons 1.670000e-01   p_joint 2.200000e-02

Joint ci ratio: 9.404585e-02	ci left: 3.199857e-02	ci right 3.517589e-02	k: 1678	n:50000
Cons ci ratio: 3.690543e-02	ci left: 1.806915e-01	ci right 1.875053e-01	k: 9204	n:50000
KS ci ratio: 1.135509e-01	ci left: 2.195657e-02	ci right 2.461918e-02	k: 1163	n:50000
RAB7L1   50000 perm   9 sec   (5348 perm/sec)   p_kst 2.326000e-02   p_cons 1.840800e-01   p_joint 3.356000e-02

Joint ci ratio: 7.695773e-02	ci left: 3.985259e-02	ci right 4.305862e-02	k: 2486	n:60000
Cons ci ratio: 3.375736e-02	ci left: 1.803933e-01	ci right 1.866040e-01	k: 11009	n:60000
KS ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
RAB7L1   60000 perm   11 sec   (5240 perm/sec)   p_kst 2.256667e-02   p_cons 1.834833e-01   p_joint 4.143333e-02

Joint ci ratio: 6.726516e-02	ci left: 4.471285e-02	ci right 4.783918e-02	k: 3238	n:70000
Cons ci ratio: 3.117452e-02	ci left: 1.813769e-01	ci right 1.871350e-01	k: 12897	n:70000
KS ci ratio: 9.845890e-02	ci left: 2.105155e-02	ci right 2.324546e-02	k: 1549	n:70000
RAB7L1   70000 perm   14 sec   (5145 perm/sec)   p_kst 2.212857e-02   p_cons 1.842429e-01   p_joint 4.625714e-02

Outputting figure to mutsig2_images.part000000000142/RAB7L1.3_632_70000_0.022129_0.18424_0.046257.png
                gene_name: RAB7L1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 47 percent done.
RABEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
Cons ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KS ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
RABEP1   10000 perm   2 sec   (5986 perm/sec)   p_kst 5.480000e-02   p_cons 2.274000e-01   p_joint 7.650000e-02

Joint ci ratio: 8.684489e-02	ci left: 8.842102e-02	ci right 9.649791e-02	k: 1848	n:20000
Cons ci ratio: 4.898279e-02	ci left: 2.365728e-01	ci right 2.485021e-01	k: 4850	n:20000
KS ci ratio: 1.157310e-01	ci left: 5.110214e-02	ci right 5.742824e-02	k: 1084	n:20000
RABEP1   20000 perm   4 sec   (5406 perm/sec)   p_kst 5.420000e-02   p_cons 2.425000e-01   p_joint 9.240000e-02

Joint ci ratio: 9.182534e-02	ci left: 5.463110e-02	ci right 5.992171e-02	k: 1717	n:30000
Cons ci ratio: 4.027024e-02	ci left: 2.351759e-01	ci right 2.448745e-01	k: 7200	n:30000
KS ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
RABEP1   30000 perm   6 sec   (5141 perm/sec)   p_kst 5.653333e-02   p_cons 2.400000e-01   p_joint 5.723333e-02

Outputting figure to mutsig2_images.part000000000142/RABEP1.3_2661_30000_0.056533_0.24_0.057233.png
                gene_name: RABEP1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 49 percent done.
RABEPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
RABEPK   10000 perm   1 sec   (6681 perm/sec)   p_kst 9.400000e-01   p_cons 9.840000e-02   p_joint 4.301000e-01

Joint ci ratio: 4.108931e-02	ci left: 3.062776e-01	ci right 3.191768e-01	k: 6254	n:20000
Cons ci ratio: 8.760394e-02	ci left: 8.699967e-02	ci right 9.501970e-02	k: 1819	n:20000
KS ci ratio: 7.060864e-03	ci left: 9.356963e-01	ci right 9.423753e-01	k: 18782	n:20000
RABEPK   20000 perm   3 sec   (5998 perm/sec)   p_kst 9.391000e-01   p_cons 9.095000e-02   p_joint 3.127000e-01

Outputting figure to mutsig2_images.part000000000142/RABEPK.3_1147_20000_0.9391_0.09095_0.3127.png
                gene_name: RABEPK
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
RABGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
KS ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
RABGEF1   10000 perm   2 sec   (6210 perm/sec)   p_kst 4.703000e-01   p_cons 3.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGEF1.3_1508_10000_0.4703_0.3804_1.png
                gene_name: RABGEF1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
RABGGTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
KS ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
RABGGTA   10000 perm   2 sec   (6274 perm/sec)   p_kst 5.774000e-01   p_cons 5.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGGTA.3_1768_10000_0.5774_0.5258_1.png
                gene_name: RABGGTA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
RACGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RACGAP1   10000 perm   2 sec   (6305 perm/sec)   p_kst 1   p_cons 2.277000e-01   p_joint 5.769000e-01

Outputting figure to mutsig2_images.part000000000142/RACGAP1.3_1963_10000_1_0.2277_0.5769.png
                gene_name: RACGAP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 58 percent done.
RAB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
Cons ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
KS ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
RAB13   10000 perm   1 sec   (7484 perm/sec)   p_kst 4.460000e-02   p_cons 2.551000e-01   p_joint 3.737000e-01

Joint ci ratio: 3.586118e-02	ci left: 3.672380e-01	ci right 3.806986e-01	k: 7479	n:20000
Cons ci ratio: 4.747785e-02	ci left: 2.481271e-01	ci right 2.602444e-01	k: 5083	n:20000
KS ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
RAB13   20000 perm   3 sec   (6316 perm/sec)   p_kst 4.390000e-02   p_cons 2.541500e-01   p_joint 3.739500e-01

Joint ci ratio: 2.935775e-02	ci left: 3.672576e-01	ci right 3.782337e-01	k: 11182	n:30000
Cons ci ratio: 3.850158e-02	ci left: 2.518304e-01	ci right 2.617501e-01	k: 7703	n:30000
KS ci ratio: 1.038971e-01	ci left: 4.294170e-02	ci right 4.768020e-02	k: 1358	n:30000
RAB13   30000 perm   5 sec   (6007 perm/sec)   p_kst 4.526667e-02   p_cons 2.567667e-01   p_joint 3.727333e-01

Joint ci ratio: 2.548536e-02	ci left: 3.668863e-01	ci right 3.763823e-01	k: 14865	n:40000
Cons ci ratio: 3.342658e-02	ci left: 2.515544e-01	ci right 2.601310e-01	k: 10233	n:40000
KS ci ratio: 9.087449e-02	ci left: 4.242651e-02	ci right 4.648996e-02	k: 1777	n:40000
RAB13   40000 perm   7 sec   (5867 perm/sec)   p_kst 4.442500e-02   p_cons 2.558250e-01   p_joint 3.716250e-01

Outputting figure to mutsig2_images.part000000000142/RAB13.2_644_40000_0.044425_0.25583_0.37162.png
                gene_name: RAB13
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
RAB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
Cons ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
RAB15   10000 perm   1 sec   (7300 perm/sec)   p_kst 3.809000e-01   p_cons 2.874000e-01   p_joint 9.919000e-01

Outputting figure to mutsig2_images.part000000000142/RAB15.2_655_10000_0.3809_0.2874_0.9919.png
                gene_name: RAB15
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 63 percent done.
RAB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
RAB18   10000 perm   1 sec   (7390 perm/sec)   p_kst 4.690000e-02   p_cons 1.263000e-01   p_joint 2.549000e-01

Joint ci ratio: 4.889630e-02	ci left: 2.372173e-01	ci right 2.491574e-01	k: 4863	n:20000
Cons ci ratio: 7.305160e-02	ci left: 1.212336e-01	ci right 1.304754e-01	k: 2516	n:20000
KS ci ratio: 1.274676e-01	ci left: 4.226524e-02	ci right 4.806793e-02	k: 902	n:20000
RAB18   20000 perm   3 sec   (6576 perm/sec)   p_kst 4.510000e-02   p_cons 1.258000e-01   p_joint 2.431500e-01

Joint ci ratio: 3.923815e-02	ci left: 2.447105e-01	ci right 2.545381e-01	k: 7488	n:30000
Cons ci ratio: 5.893019e-02	ci left: 1.247326e-01	ci right 1.323395e-01	k: 3855	n:30000
KS ci ratio: 1.039371e-01	ci left: 4.290919e-02	ci right 4.764604e-02	k: 1357	n:30000
RAB18   30000 perm   5 sec   (6240 perm/sec)   p_kst 4.523333e-02   p_cons 1.285000e-01   p_joint 2.496000e-01

Joint ci ratio: 3.390737e-02	ci left: 2.461849e-01	ci right 2.547014e-01	k: 10017	n:40000
Cons ci ratio: 5.063105e-02	ci left: 1.270155e-01	ci right 1.336383e-01	k: 5212	n:40000
KS ci ratio: 8.946190e-02	ci left: 4.374741e-02	ci right 4.786886e-02	k: 1831	n:40000
RAB18   40000 perm   7 sec   (6045 perm/sec)   p_kst 4.577500e-02   p_cons 1.303000e-01   p_joint 2.504250e-01

Outputting figure to mutsig2_images.part000000000142/RAB18.2_649_40000_0.045775_0.1303_0.25043.png
                gene_name: RAB18
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.25 

Current progress: 65 percent done.
RAB27B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
KS ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
RAB27B   10000 perm   1 sec   (7448 perm/sec)   p_kst 8.573000e-01   p_cons 8.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB27B.2_677_10000_0.8573_0.8696_1.png
                gene_name: RAB27B
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
RAB28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 2.794543e-02	ci left: 6.536391e-01	ci right 6.722659e-01	k: 6630	n:10000
RAB28   10000 perm   1 sec   (6915 perm/sec)   p_kst 6.630000e-01   p_cons 3.160000e-02   p_joint 7.790000e-02

Joint ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
Cons ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
KS ci ratio: 1.988732e-02	ci left: 6.535376e-01	ci right 6.667158e-01	k: 13203	n:20000
RAB28   20000 perm   3 sec   (6337 perm/sec)   p_kst 6.601500e-01   p_cons 3.030000e-02   p_joint 4.145000e-02

Joint ci ratio: 6.783272e-02	ci left: 9.675873e-02	ci right 1.035856e-01	k: 3004	n:30000
Cons ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
KS ci ratio: 1.628702e-02	ci left: 6.534032e-01	ci right 6.641661e-01	k: 19764	n:30000
RAB28   30000 perm   5 sec   (6074 perm/sec)   p_kst 6.588000e-01   p_cons 2.973333e-02   p_joint 1.001333e-01

Joint ci ratio: 7.130359e-02	ci left: 6.773966e-02	ci right 7.277295e-02	k: 2809	n:40000
Cons ci ratio: 9.232391e-02	ci left: 4.113056e-02	ci right 4.513611e-02	k: 1724	n:40000
KS ci ratio: 1.404629e-02	ci left: 6.560109e-01	ci right 6.653157e-01	k: 26427	n:40000
RAB28   40000 perm   7 sec   (5889 perm/sec)   p_kst 6.606750e-01   p_cons 4.310000e-02   p_joint 7.022500e-02

Outputting figure to mutsig2_images.part000000000142/RAB28.2_834_40000_0.66068_0.0431_0.070225.png
                gene_name: RAB28
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 70 percent done.
RAB31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
Cons ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
KS ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
RAB31   10000 perm   1 sec   (7741 perm/sec)   p_kst 4.958000e-01   p_cons 2.298000e-01   p_joint 7.352000e-01

Outputting figure to mutsig2_images.part000000000142/RAB31.2_616_10000_0.4958_0.2298_0.7352.png
                gene_name: RAB31
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 72 percent done.
RAB33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
KS ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
RAB33A   10000 perm   1 sec   (7388 perm/sec)   p_kst 2.238000e-01   p_cons 1.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB33A.2_722_10000_0.2238_0.1642_1.png
                gene_name: RAB33A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
RAB34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
Cons ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
KS ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
RAB34   10000 perm   1 sec   (7081 perm/sec)   p_kst 1.840000e-01   p_cons 5.015000e-01   p_joint 3.167000e-01

Outputting figure to mutsig2_images.part000000000142/RAB34.2_1062_10000_0.184_0.5015_0.3167.png
                gene_name: RAB34
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 77 percent done.
RAB39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
Cons ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
KS ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
RAB39B   10000 perm   1 sec   (6915 perm/sec)   p_kst 3.717000e-01   p_cons 8.718000e-01   p_joint 5.543000e-01

Outputting figure to mutsig2_images.part000000000142/RAB39B.2_650_10000_0.3717_0.8718_0.5543.png
                gene_name: RAB39B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 79 percent done.
RAB3GAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
Cons ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
KS ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
RAB3GAP1   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.846000e-01   p_cons 2.313000e-01   p_joint 9.922000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3GAP1.2_3067_10000_0.3846_0.2313_0.9922.png
                gene_name: RAB3GAP1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
RAB3IL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.236267e-02	ci left: 4.513922e-01	ci right 4.710304e-01	k: 4612	n:10000
Cons ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
KS ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
RAB3IL1   10000 perm   1 sec   (7172 perm/sec)   p_kst 8.629000e-01   p_cons 1.520000e-01   p_joint 4.612000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3IL1.2_1189_10000_0.8629_0.152_0.4612.png
                gene_name: RAB3IL1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 84 percent done.
RAB40AL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
KS ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
RAB40AL   10000 perm   1 sec   (7234 perm/sec)   p_kst 5.714000e-01   p_cons 2.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB40AL.2_841_10000_0.5714_0.259_1.png
                gene_name: RAB40AL
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
RAB43
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 88 percent done.
RAB4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
KS ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
RAB4A   10000 perm   1 sec   (7234 perm/sec)   p_kst 9.700000e-01   p_cons 6.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB4A.2_685_10000_0.97_0.6347_1.png
                gene_name: RAB4A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
RABEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
Cons ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
KS ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
RABEP2   10000 perm   2 sec   (6485 perm/sec)   p_kst 5.468000e-01   p_cons 1.016000e-01   p_joint 8.385000e-01

Joint ci ratio: 2.963992e-02	ci left: 4.595663e-01	ci right 4.734434e-01	k: 9330	n:20000
Cons ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
KS ci ratio: 2.537868e-02	ci left: 5.370163e-01	ci right 5.508709e-01	k: 10879	n:20000
RABEP2   20000 perm   4 sec   (5663 perm/sec)   p_kst 5.439500e-01   p_cons 1.088500e-01   p_joint 4.665000e-01

Outputting figure to mutsig2_images.part000000000142/RABEP2.2_1762_20000_0.54395_0.10885_0.4665.png
                gene_name: RABEP2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 93 percent done.
RABGGTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
KS ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
RABGGTB   10000 perm   1 sec   (6963 perm/sec)   p_kst 2.852000e-01   p_cons 3.053000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGGTB.2_1032_10000_0.2852_0.3053_1.png
                gene_name: RABGGTB
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
RAD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
Cons ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
RAD17   10000 perm   2 sec   (6369 perm/sec)   p_kst 8.846000e-01   p_cons 6.900000e-02   p_joint 2.684000e-01

Joint ci ratio: 3.693418e-02	ci left: 3.535924e-01	ci right 3.669483e-01	k: 7205	n:20000
Cons ci ratio: 1.023740e-01	ci left: 6.479305e-02	ci right 7.183308e-02	k: 1365	n:20000
KS ci ratio: 1.011533e-02	ci left: 8.779565e-01	ci right 8.869320e-01	k: 17650	n:20000
RAD17   20000 perm   3 sec   (5738 perm/sec)   p_kst 8.825000e-01   p_cons 6.825000e-02   p_joint 3.602500e-01

Joint ci ratio: 3.074327e-02	ci left: 3.460289e-01	ci right 3.568666e-01	k: 10543	n:30000
Cons ci ratio: 8.443197e-02	ci left: 6.419615e-02	ci right 6.988805e-02	k: 2010	n:30000
KS ci ratio: 8.268120e-03	ci left: 8.785659e-01	ci right 8.858932e-01	k: 26468	n:30000
RAD17   30000 perm   6 sec   (5278 perm/sec)   p_kst 8.822667e-01   p_cons 6.700000e-02   p_joint 3.514333e-01

Outputting figure to mutsig2_images.part000000000142/RAD17.2_2123_30000_0.88227_0.067_0.35143.png
                gene_name: RAD17
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 98 percent done.
RAD18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945788e-03	ci left: 9.745067e-01	ci right 9.804106e-01	k: 9776	n:10000
Cons ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
KS ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
RAD18   10000 perm   1 sec   (6923 perm/sec)   p_kst 5.320000e-01   p_cons 2.119000e-01   p_joint 9.776000e-01

Outputting figure to mutsig2_images.part000000000142/RAD18.2_1540_10000_0.532_0.2119_0.9776.png
                gene_name: RAD18
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000142
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 142 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 4422361: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000143> was used as the working directory.
Started at Wed Oct 24 18:05:58 2012
Results reported at Wed Oct 24 18:23:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000143.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000143.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 143  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000143.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1142.97 sec.
    Max Memory :      5266 MB
    Max Swap   :      7630 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
143
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 143
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 143: processing genes 12848 - 12937
Calculating significance of each gene.
Using projection method.
12848	RAD23B	3.469702e-01
12849	RAD50	9.651206e-01
12850	RAD51	7.168914e-01
12851	RAD51AP1	4.305561e-01
12852	RAD51AP2	2.919792e-02
12853	RAD51C	2.134487e-01
12854	RAD51L1	1
12855	RAD51L3	7.256743e-01
12856	RAD52	7.422661e-01
12857	RAD54B	1.007333e-01
12858	RAD54L	1
12859	RAD54L2	9.964862e-01
12860	RAD9A	6.443020e-01
12861	RAD9B	1
12862	RADIL	9.347720e-01
12863	RAE1	9.175394e-01
12864	RAET1E	4.908997e-01
12865	RAET1G	1
12866	RAET1L	1
12867	RAF1	9.443920e-01
12868	RAG1	1.487673e-01
In gene RAG1AP1 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 690     n = 1	mu =   5.69e-07
12869	RAG1AP1	1.704707e-01
12870	RAG2	1
12871	RAGE	5.320902e-01
12872	RAI1	1
12873	RAI14	9.893790e-01
12874	RAI2	3.626525e-01
12875	RALA	2.034151e-01
12876	RALB	7.685052e-01
12877	RALBP1	9.650132e-01
12878	RALGAPA1	4.502699e-01
12879	RALGAPA2	8.703267e-01
12880	RALGAPB	7.041054e-01
12881	RALGDS	1
12882	RALGPS1	6.757834e-01
12883	RALGPS2	9.275467e-01
12884	RALY	1
12885	RALYL	4.739955e-03
12886	RAMP1	1
12887	RAMP2	3.375312e-01
12888	RAMP3	1.402941e-01
12889	RAN	1
12890	RANBP1	1
12891	RANBP10	7.065997e-01
12892	RANBP17	4.889971e-01
12893	RANBP2	9.999682e-01
12894	RANBP3	7.319923e-01
12895	RANBP3L	1.795840e-01
12896	RANBP6	7.177781e-01
12897	RANBP9	8.782325e-01
12898	RANGAP1	6.608040e-01
12899	RANGRF	4.968060e-01
12900	RAP1A	3.185184e-01
12901	RAP1B	3.614030e-01
12902	RAP1GAP	4.303409e-01
12903	RAP1GAP2	1
12904	RAP1GDS1	7.951753e-01
12905	RAP2A	1
12906	RAP2B	5.879715e-01
12907	RAP2C	7.116500e-02
12908	RAPGEF1	1
12909	RAPGEF2	9.985017e-01
12910	RAPGEF3	9.537912e-01
12911	RAPGEF4	5.602784e-01
12912	RAPGEF5	6.539920e-01
12913	RAPGEF6	8.342658e-01
12914	RAPGEFL1	6.101867e-01
12915	RAPH1	9.996352e-01
12916	RAPSN	7.501794e-01
12917	RARA	8.576487e-01
12918	RARB	1
12919	RARG	9.039396e-01
12920	RARRES1	1
12921	RARRES2	1
12922	RARRES3	7.055495e-01
12923	RARS	4.167262e-01
12924	RARS2	8.424252e-01
12925	RASA1	9.555657e-01
12926	RASA2	6.354739e-01
12927	RASA3	9.541537e-01
12928	RASAL1	2.224564e-01
12929	RASAL2	8.794370e-01
12930	RASAL3	9.088925e-01
12931	RASD1	1
In gene RASD2 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 809     n = 1	mu =   3.01e-07
12932	RASD2	5.874184e-01
12933	RASEF	1
12934	RASGEF1A	1
12935	RASGEF1B	5.759177e-01
12936	RASGEF1C	4.422616e-01
12937	RASGRF1	1
Done

Running MutSig 2:
Scatter job 143: processing genes 12848 - 12937
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RANBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
Cons ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
KS ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
RANBP2   10000 perm   3 sec   (3046 perm/sec)   p_kst 1.416000e-01   p_cons 4.833000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP2.18_9791_10000_0.1416_0.4833_0.2472.png
                gene_name: RANBP2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 2 percent done.
RAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
Cons ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
RAG1   10000 perm   2 sec   (4664 perm/sec)   p_kst 8.191000e-01   p_cons 7.300000e-03   p_joint 3.310000e-02

Joint ci ratio: 1.514734e-01	ci left: 2.994113e-02	ci right 3.489604e-02	k: 647	n:20000
Cons ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
KS ci ratio: 1.305091e-02	ci left: 8.131377e-01	ci right 8.238696e-01	k: 16371	n:20000
RAG1   20000 perm   5 sec   (4260 perm/sec)   p_kst 8.185500e-01   p_cons 8.100000e-03   p_joint 3.235000e-02

Joint ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
Cons ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
KS ci ratio: 1.086638e-02	ci left: 8.082046e-01	ci right 8.170681e-01	k: 24380	n:30000
RAG1   30000 perm   7 sec   (4111 perm/sec)   p_kst 8.126667e-01   p_cons 7.700000e-03   p_joint 2.923333e-02

Joint ci ratio: 1.234813e-01	ci left: 2.305558e-02	ci right 2.611397e-02	k: 982	n:40000
Cons ci ratio: 2.235984e-01	ci left: 6.772323e-03	ci right 8.500309e-03	k: 304	n:40000
KS ci ratio: 9.539065e-03	ci left: 8.046091e-01	ci right 8.123461e-01	k: 32340	n:40000
RAG1   40000 perm   10 sec   (4007 perm/sec)   p_kst 8.085000e-01   p_cons 7.600000e-03   p_joint 2.455000e-02

Joint ci ratio: 1.088550e-01	ci left: 2.390223e-02	ci right 2.667326e-02	k: 1263	n:50000
Cons ci ratio: 2.013950e-01	ci left: 6.762465e-03	ci right 8.295544e-03	k: 375	n:50000
KS ci ratio: 8.508277e-03	ci left: 8.058890e-01	ci right 8.127950e-01	k: 40468	n:50000
RAG1   50000 perm   13 sec   (3926 perm/sec)   p_kst 8.093600e-01   p_cons 7.500000e-03   p_joint 2.526000e-02

Joint ci ratio: 9.195038e-02	ci left: 2.804652e-02	ci right 3.076592e-02	k: 1763	n:60000
Cons ci ratio: 1.836840e-01	ci left: 6.841129e-03	ci right 8.240472e-03	k: 451	n:60000
KS ci ratio: 7.754191e-03	ci left: 8.067035e-01	ci right 8.129998e-01	k: 48592	n:60000
RAG1   60000 perm   16 sec   (3855 perm/sec)   p_kst 8.098667e-01   p_cons 7.516667e-03   p_joint 2.938333e-02

Joint ci ratio: 8.722612e-02	ci left: 2.681830e-02	ci right 2.927817e-02	k: 1962	n:70000
Cons ci ratio: 1.704389e-01	ci left: 6.860520e-03	ci right 8.152237e-03	k: 524	n:70000
KS ci ratio: 7.281259e-03	ci left: 8.025193e-01	ci right 8.083982e-01	k: 56383	n:70000
RAG1   70000 perm   19 sec   (3784 perm/sec)   p_kst 8.054714e-01   p_cons 7.485714e-03   p_joint 2.802857e-02

Joint ci ratio: 7.200338e-02	ci left: 3.443718e-02	ci right 3.702163e-02	k: 2857	n:80000
Cons ci ratio: 1.609241e-01	ci left: 6.769776e-03	ci right 7.966367e-03	k: 588	n:80000
KS ci ratio: 6.810367e-03	ci left: 8.027399e-01	ci right 8.082379e-01	k: 64440	n:80000
RAG1   80000 perm   22 sec   (3720 perm/sec)   p_kst 8.055000e-01   p_cons 7.350000e-03   p_joint 3.571250e-02

Joint ci ratio: 6.499725e-02	ci left: 3.758046e-02	ci right 4.011604e-02	k: 3495	n:90000
Cons ci ratio: 1.522570e-01	ci left: 6.754214e-03	ci right 7.877892e-03	k: 657	n:90000
KS ci ratio: 6.420417e-03	ci left: 8.029210e-01	ci right 8.081037e-01	k: 72497	n:90000
RAG1   90000 perm   25 sec   (3663 perm/sec)   p_kst 8.055222e-01   p_cons 7.300000e-03   p_joint 3.883333e-02

Joint ci ratio: 6.762368e-02	ci left: 3.140953e-02	ci right 3.361769e-02	k: 3250	n:100000
Cons ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
KS ci ratio: 6.204285e-03	ci left: 7.971857e-01	ci right 8.021569e-01	k: 79968	n:100000
RAG1   100000 perm   28 sec   (3606 perm/sec)   p_kst 7.996800e-01   p_cons 7.160000e-03   p_joint 3.250000e-02

Joint ci ratio: 7.040535e-02	ci left: 2.644323e-02	ci right 2.838180e-02	k: 3014	n:110000
Cons ci ratio: 1.394101e-01	ci left: 6.638638e-03	ci right 7.642157e-03	k: 784	n:110000
KS ci ratio: 5.923573e-03	ci left: 7.968659e-01	ci right 8.016092e-01	k: 87917	n:110000
RAG1   110000 perm   31 sec   (3552 perm/sec)   p_kst 7.992455e-01   p_cons 7.127273e-03   p_joint 2.740000e-02

Joint ci ratio: 7.139185e-02	ci left: 2.363265e-02	ci right 2.539043e-02	k: 2940	n:120000
Cons ci ratio: 1.330348e-01	ci left: 6.705239e-03	ci right 7.668808e-03	k: 861	n:120000
KS ci ratio: 5.670277e-03	ci left: 7.970308e-01	ci right 8.015713e-01	k: 95917	n:120000
RAG1   120000 perm   34 sec   (3500 perm/sec)   p_kst 7.993083e-01   p_cons 7.175000e-03   p_joint 2.450000e-02

Joint ci ratio: 6.617257e-02	ci left: 2.541413e-02	ci right 2.716093e-02	k: 3416	n:130000
Cons ci ratio: 1.288505e-01	ci left: 6.613531e-03	ci right 7.531740e-03	k: 918	n:130000
KS ci ratio: 5.447182e-03	ci left: 7.971586e-01	ci right 8.015204e-01	k: 103915	n:130000
RAG1   130000 perm   38 sec   (3450 perm/sec)   p_kst 7.993462e-01   p_cons 7.061538e-03   p_joint 2.627692e-02

Joint ci ratio: 6.685053e-02	ci left: 2.316946e-02	ci right 2.477891e-02	k: 3355	n:140000
Cons ci ratio: 1.247163e-01	ci left: 6.569939e-03	ci right 7.450665e-03	k: 980	n:140000
KS ci ratio: 5.245232e-03	ci left: 7.974719e-01	ci right 8.016729e-01	k: 111941	n:140000
RAG1   140000 perm   41 sec   (3402 perm/sec)   p_kst 7.995786e-01   p_cons 7.000000e-03   p_joint 2.396429e-02

Joint ci ratio: 5.820241e-02	ci left: 2.849833e-02	ci right 3.021326e-02	k: 4402	n:150000
Cons ci ratio: 1.203187e-01	ci left: 6.603704e-03	ci right 7.455519e-03	k: 1053	n:150000
KS ci ratio: 4.505362e-03	ci left: 8.327368e-01	ci right 8.365036e-01	k: 125194	n:150000
RAG1   150000 perm   45 sec   (3355 perm/sec)   p_kst 8.346267e-01   p_cons 7.020000e-03   p_joint 2.934667e-02

Joint ci ratio: 5.633901e-02	ci left: 2.854071e-02	ci right 3.020141e-02	k: 4698	n:160000
Cons ci ratio: 1.166166e-01	ci left: 6.603379e-03	ci right 7.427137e-03	k: 1121	n:160000
KS ci ratio: 4.358569e-03	ci left: 8.330340e-01	ci right 8.366789e-01	k: 133578	n:160000
RAG1   160000 perm   49 sec   (3284 perm/sec)   p_kst 8.348625e-01   p_cons 7.006250e-03   p_joint 2.936250e-02

Joint ci ratio: 5.632752e-02	ci left: 2.691920e-02	ci right 2.848520e-02	k: 4708	n:170000
Cons ci ratio: 1.129500e-01	ci left: 6.637749e-03	ci right 7.438025e-03	k: 1195	n:170000
KS ci ratio: 4.228669e-03	ci left: 8.330733e-01	ci right 8.366094e-01	k: 141924	n:170000
RAG1   170000 perm   52 sec   (3244 perm/sec)   p_kst 8.348471e-01   p_cons 7.029412e-03   p_joint 2.769412e-02

Joint ci ratio: 5.462233e-02	ci left: 2.705633e-02	ci right 2.858116e-02	k: 5006	n:180000
Cons ci ratio: 1.099143e-01	ci left: 6.630832e-03	ci right 7.407396e-03	k: 1262	n:180000
KS ci ratio: 4.110807e-03	ci left: 8.330372e-01	ci right 8.364742e-01	k: 150257	n:180000
RAG1   180000 perm   56 sec   (3205 perm/sec)   p_kst 8.347611e-01   p_cons 7.011111e-03   p_joint 2.781111e-02

Joint ci ratio: 5.548260e-02	ci left: 2.488926e-02	ci right 2.631474e-02	k: 4863	n:190000
Cons ci ratio: 1.065876e-01	ci left: 6.691505e-03	ci right 7.449968e-03	k: 1342	n:190000
KS ci ratio: 4.001288e-03	ci left: 8.330749e-01	ci right 8.364202e-01	k: 158603	n:190000
RAG1   190000 perm   60 sec   (3167 perm/sec)   p_kst 8.347526e-01   p_cons 7.063158e-03   p_joint 2.559474e-02

Joint ci ratio: 5.401824e-02	ci left: 2.496154e-02	ci right 2.635226e-02	k: 5130	n:200000
Cons ci ratio: 1.038771e-01	ci left: 6.702588e-03	ci right 7.441807e-03	k: 1413	n:200000
KS ci ratio: 3.896686e-03	ci left: 8.333508e-01	ci right 8.366094e-01	k: 166997	n:200000
RAG1   200000 perm   64 sec   (3130 perm/sec)   p_kst 8.349850e-01   p_cons 7.065000e-03   p_joint 2.565000e-02

Joint ci ratio: 5.330603e-02	ci left: 2.443513e-02	ci right 2.577802e-02	k: 5271	n:210000
Cons ci ratio: 1.011577e-01	ci left: 6.740689e-03	ci right 7.463493e-03	k: 1490	n:210000
KS ci ratio: 3.803423e-03	ci left: 8.333433e-01	ci right 8.365236e-01	k: 175337	n:210000
RAG1   210000 perm   68 sec   (3094 perm/sec)   p_kst 8.349381e-01   p_cons 7.095238e-03   p_joint 2.510000e-02

Joint ci ratio: 5.103807e-02	ci left: 2.544674e-02	ci right 2.678397e-02	k: 5744	n:220000
Cons ci ratio: 9.899164e-02	ci left: 6.726783e-03	ci right 7.431752e-03	k: 1556	n:220000
KS ci ratio: 3.714835e-03	ci left: 8.334651e-01	ci right 8.365715e-01	k: 183705	n:220000
RAG1   220000 perm   72 sec   (3049 perm/sec)   p_kst 8.350227e-01   p_cons 7.072727e-03   p_joint 2.610909e-02

Outputting figure to mutsig2_images.part000000000143/RAG1.17_3136_220000_0.83502_0.0070727_0.026109.png
                gene_name: RAG1
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.0071 
      ci_cons_bounds_left: 0.0067 
     ci_cons_bounds_right: 0.0074 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 3 percent done.
RALGAPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
RALGAPA1   10000 perm   2 sec   (4103 perm/sec)   p_kst 1.310000e-02   p_cons 8.413000e-01   p_joint 4.740000e-02

Joint ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
Cons ci ratio: 1.217441e-02	ci left: 8.331233e-01	ci right 8.433781e-01	k: 16766	n:20000
KS ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
RALGAPA1   20000 perm   5 sec   (3759 perm/sec)   p_kst 1.395000e-02   p_cons 8.383000e-01   p_joint 5.125000e-02

Joint ci ratio: 1.014203e-01	ci left: 4.502272e-02	ci right 4.986541e-02	k: 1422	n:30000
Cons ci ratio: 1.031299e-02	ci left: 8.237486e-01	ci right 8.323211e-01	k: 24842	n:30000
KS ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
RALGAPA1   30000 perm   8 sec   (3614 perm/sec)   p_kst 1.453333e-02   p_cons 8.280667e-01   p_joint 4.740000e-02

Joint ci ratio: 1.004150e-01	ci left: 3.485420e-02	ci right 3.856345e-02	k: 1467	n:40000
Cons ci ratio: 8.916087e-03	ci left: 8.248201e-01	ci right 8.322321e-01	k: 33142	n:40000
KS ci ratio: 1.631599e-01	ci left: 1.306341e-02	ci right 1.540789e-02	k: 568	n:40000
RALGAPA1   40000 perm   11 sec   (3525 perm/sec)   p_kst 1.420000e-02   p_cons 8.285500e-01   p_joint 3.667500e-02

Joint ci ratio: 8.822906e-02	ci left: 3.630184e-02	ci right 3.967207e-02	k: 1898	n:50000
Cons ci ratio: 7.992995e-03	ci left: 8.245624e-01	ci right 8.311995e-01	k: 41395	n:50000
KS ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
RALGAPA1   50000 perm   14 sec   (3454 perm/sec)   p_kst 1.458000e-02   p_cons 8.279000e-01   p_joint 3.796000e-02

Joint ci ratio: 8.130143e-02	ci left: 3.578149e-02	ci right 3.883015e-02	k: 2237	n:60000
Cons ci ratio: 7.299966e-03	ci left: 8.247213e-01	ci right 8.307803e-01	k: 49666	n:60000
KS ci ratio: 1.321637e-01	ci left: 1.349421e-02	ci right 1.541984e-02	k: 866	n:60000
RALGAPA1   60000 perm   18 sec   (3393 perm/sec)   p_kst 1.443333e-02   p_cons 8.277667e-01   p_joint 3.728333e-02

Joint ci ratio: 8.175289e-02	ci left: 3.049843e-02	ci right 3.311199e-02	k: 2225	n:70000
Cons ci ratio: 6.759346e-03	ci left: 8.249105e-01	ci right 8.305195e-01	k: 57941	n:70000
KS ci ratio: 1.221457e-01	ci left: 1.361362e-02	ci right 1.539838e-02	k: 1014	n:70000
RALGAPA1   70000 perm   21 sec   (3337 perm/sec)   p_kst 1.448571e-02   p_cons 8.277286e-01   p_joint 3.178571e-02

Joint ci ratio: 8.476371e-02	ci left: 2.493272e-02	ci right 2.715183e-02	k: 2082	n:80000
Cons ci ratio: 6.515962e-03	ci left: 8.162891e-01	ci right 8.216378e-01	k: 65518	n:80000
KS ci ratio: 1.147094e-01	ci left: 1.356157e-02	ci right 1.522392e-02	k: 1150	n:80000
RALGAPA1   80000 perm   24 sec   (3285 perm/sec)   p_kst 1.437500e-02   p_cons 8.189750e-01   p_joint 2.602500e-02

Joint ci ratio: 7.736672e-02	ci left: 2.665931e-02	ci right 2.881571e-02	k: 2495	n:90000
Cons ci ratio: 6.149920e-03	ci left: 8.161225e-01	ci right 8.211681e-01	k: 73679	n:90000
KS ci ratio: 1.082711e-01	ci left: 1.357773e-02	ci right 1.514269e-02	k: 1291	n:90000
RALGAPA1   90000 perm   28 sec   (3237 perm/sec)   p_kst 1.434444e-02   p_cons 8.186556e-01   p_joint 2.772222e-02

Joint ci ratio: 6.722926e-02	ci left: 3.177349e-02	ci right 3.399371e-02	k: 3287	n:100000
Cons ci ratio: 5.840718e-03	ci left: 8.159260e-01	ci right 8.207155e-01	k: 81833	n:100000
KS ci ratio: 1.025541e-01	ci left: 1.366098e-02	ci right 1.514738e-02	k: 1439	n:100000
RALGAPA1   100000 perm   31 sec   (3195 perm/sec)   p_kst 1.439000e-02   p_cons 8.183300e-01   p_joint 3.287000e-02

Joint ci ratio: 6.771618e-02	ci left: 2.856161e-02	ci right 3.057238e-02	k: 3251	n:110000
Cons ci ratio: 5.572699e-03	ci left: 8.158348e-01	ci right 8.204029e-01	k: 89994	n:110000
KS ci ratio: 9.734599e-02	ci left: 1.381960e-02	ci right 1.524253e-02	k: 1597	n:110000
RALGAPA1   110000 perm   35 sec   (3153 perm/sec)   p_kst 1.451818e-02   p_cons 8.181273e-01   p_joint 2.955455e-02

Outputting figure to mutsig2_images.part000000000143/RALGAPA1.12_6424_110000_0.014518_0.81813_0.029555.png
                gene_name: RALGAPA1
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 5 percent done.
RAD51AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
Cons ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
KS ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
RAD51AP2   10000 perm   2 sec   (4807 perm/sec)   p_kst 1.856000e-01   p_cons 6.398000e-01   p_joint 3.071000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51AP2.11_3492_10000_0.1856_0.6398_0.3071.png
                gene_name: RAD51AP2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 7 percent done.
RALGAPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.745920e-02	ci left: 6.614910e-01	ci right 6.800095e-01	k: 6708	n:10000
Cons ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
KS ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
RALGAPB   10000 perm   2 sec   (4314 perm/sec)   p_kst 7.115000e-01   p_cons 3.708000e-01   p_joint 6.708000e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPB.10_4601_10000_0.7115_0.3708_0.6708.png
                gene_name: RALGAPB
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 9 percent done.
RAPGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
RAPGEF2   10000 perm   2 sec   (4379 perm/sec)   p_kst 2.765000e-01   p_cons 4.650000e-02   p_joint 1.284000e-01

Joint ci ratio: 8.195287e-02	ci left: 9.842765e-02	ci right 1.068883e-01	k: 2052	n:20000
Cons ci ratio: 1.287420e-01	ci left: 4.144132e-02	ci right 4.719210e-02	k: 885	n:20000
KS ci ratio: 4.347125e-02	ci left: 2.827238e-01	ci right 2.953376e-01	k: 5780	n:20000
RAPGEF2   20000 perm   5 sec   (4008 perm/sec)   p_kst 2.890000e-01   p_cons 4.425000e-02   p_joint 1.026000e-01

Joint ci ratio: 6.285518e-02	ci left: 1.111477e-01	ci right 1.183937e-01	k: 3442	n:30000
Cons ci ratio: 1.059128e-01	ci left: 4.134938e-02	ci right 4.600618e-02	k: 1309	n:30000
KS ci ratio: 3.548986e-02	ci left: 2.839408e-01	ci right 2.942334e-01	k: 8672	n:30000
RAPGEF2   30000 perm   8 sec   (3858 perm/sec)   p_kst 2.890667e-01   p_cons 4.363333e-02   p_joint 1.147333e-01

Joint ci ratio: 4.550279e-02	ci left: 1.529272e-01	ci right 1.600727e-01	k: 6259	n:40000
Cons ci ratio: 8.808497e-02	ci left: 4.509327e-02	ci right 4.927278e-02	k: 1886	n:40000
KS ci ratio: 3.072767e-02	ci left: 2.847349e-01	ci right 2.936457e-01	k: 11567	n:40000
RAPGEF2   40000 perm   11 sec   (3763 perm/sec)   p_kst 2.891750e-01   p_cons 4.715000e-02   p_joint 1.564750e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF2.10_4596_40000_0.28918_0.04715_0.15648.png
                gene_name: RAPGEF2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
RALGAPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957624e-02	ci left: 7.924290e-01	ci right 8.081956e-01	k: 8004	n:10000
Cons ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
KS ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
RALGAPA2   10000 perm   2 sec   (4154 perm/sec)   p_kst 8.201000e-01   p_cons 3.161000e-01   p_joint 8.004000e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPA2.9_5778_10000_0.8201_0.3161_0.8004.png
                gene_name: RALGAPA2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 12 percent done.
RASAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
RASAL2   10000 perm   2 sec   (4660 perm/sec)   p_kst 9.790000e-02   p_cons 6.882000e-01   p_joint 2.921000e-01

Joint ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
Cons ci ratio: 1.929652e-02	ci left: 6.670014e-01	ci right 6.800481e-01	k: 13471	n:20000
KS ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
RASAL2   20000 perm   5 sec   (4256 perm/sec)   p_kst 1.002000e-01   p_cons 6.735500e-01   p_joint 1.629500e-01

Outputting figure to mutsig2_images.part000000000143/RASAL2.9_3953_20000_0.1002_0.67355_0.16295.png
                gene_name: RASAL2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 14 percent done.
RAD54B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
Cons ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
RAD54B   10000 perm   2 sec   (4794 perm/sec)   p_kst 1.710000e-01   p_cons 2.190000e-02   p_joint 6.110000e-02

Joint ci ratio: 1.148384e-01	ci left: 5.188028e-02	ci right 5.824985e-02	k: 1100	n:20000
Cons ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
KS ci ratio: 6.056072e-02	ci left: 1.679288e-01	ci right 1.784663e-01	k: 3463	n:20000
RAD54B   20000 perm   5 sec   (4361 perm/sec)   p_kst 1.731500e-01   p_cons 2.235000e-02   p_joint 5.500000e-02

Joint ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
Cons ci ratio: 1.506624e-01	ci left: 2.040200e-02	ci right 2.375811e-02	k: 661	n:30000
KS ci ratio: 4.980182e-02	ci left: 1.668868e-01	ci right 1.754436e-01	k: 5134	n:30000
RAD54B   30000 perm   7 sec   (4189 perm/sec)   p_kst 1.711333e-01   p_cons 2.203333e-02   p_joint 5.603333e-02

Joint ci ratio: 8.450356e-02	ci left: 4.888872e-02	ci right 5.322675e-02	k: 2041	n:40000
Cons ci ratio: 1.301516e-01	ci left: 2.073002e-02	ci right 2.363992e-02	k: 886	n:40000
KS ci ratio: 4.308294e-02	ci left: 1.677679e-01	ci right 1.751799e-01	k: 6858	n:40000
RAD54B   40000 perm   10 sec   (4072 perm/sec)   p_kst 1.714500e-01   p_cons 2.215000e-02   p_joint 5.102500e-02

Joint ci ratio: 8.230334e-02	ci left: 4.161098e-02	ci right 4.520227e-02	k: 2169	n:50000
Cons ci ratio: 1.177072e-01	ci left: 2.042129e-02	ci right 2.299466e-02	k: 1084	n:50000
KS ci ratio: 3.834783e-02	ci left: 1.695349e-01	ci right 1.761832e-01	k: 8642	n:50000
RAD54B   50000 perm   13 sec   (3983 perm/sec)   p_kst 1.728400e-01   p_cons 2.168000e-02   p_joint 4.338000e-02

Joint ci ratio: 6.881973e-02	ci left: 4.953180e-02	ci right 5.307843e-02	k: 3077	n:60000
Cons ci ratio: 1.079186e-01	ci left: 2.035428e-02	ci right 2.269232e-02	k: 1290	n:60000
KS ci ratio: 3.497119e-02	ci left: 1.701134e-01	ci right 1.761849e-01	k: 10388	n:60000
RAD54B   60000 perm   15 sec   (3909 perm/sec)   p_kst 1.731333e-01   p_cons 2.150000e-02   p_joint 5.128333e-02

Joint ci ratio: 6.376156e-02	ci left: 4.959280e-02	ci right 5.287310e-02	k: 3585	n:70000
Cons ci ratio: 9.944757e-02	ci left: 2.063336e-02	ci right 2.280654e-02	k: 1519	n:70000
KS ci ratio: 3.246699e-02	ci left: 1.695515e-01	ci right 1.751614e-01	k: 12064	n:70000
RAD54B   70000 perm   18 sec   (3839 perm/sec)   p_kst 1.723429e-01   p_cons 2.170000e-02   p_joint 5.121429e-02

Outputting figure to mutsig2_images.part000000000143/RAD54B.8_2789_70000_0.17234_0.0217_0.051214.png
                gene_name: RAD54B
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 16 percent done.
RADIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
Cons ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
KS ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
RADIL   10000 perm   2 sec   (4629 perm/sec)   p_kst 1.751000e-01   p_cons 9.970000e-01   p_joint 3.078000e-01

Outputting figure to mutsig2_images.part000000000143/RADIL.8_3284_10000_0.1751_0.997_0.3078.png
                gene_name: RADIL
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
RALYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
RALYL   10000 perm   2 sec   (5706 perm/sec)   p_kst 5.432000e-01   p_cons 1.030000e-02   p_joint 6.990000e-02

Joint ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
Cons ci ratio: 2.750958e-01	ci left: 8.667639e-03	ci right 1.147755e-02	k: 200	n:20000
KS ci ratio: 2.563291e-02	ci left: 5.320613e-01	ci right 5.459273e-01	k: 10780	n:20000
RALYL   20000 perm   4 sec   (5148 perm/sec)   p_kst 5.390000e-01   p_cons 1.000000e-02   p_joint 5.250000e-02

Joint ci ratio: 9.151498e-02	ci left: 5.498984e-02	ci right 6.029623e-02	k: 1728	n:30000
Cons ci ratio: 2.165951e-01	ci left: 9.629741e-03	ci right 1.199976e-02	k: 323	n:30000
KS ci ratio: 2.097180e-02	ci left: 5.323383e-01	ci right 5.436543e-01	k: 16140	n:30000
RALYL   30000 perm   6 sec   (4920 perm/sec)   p_kst 5.380000e-01   p_cons 1.076667e-02   p_joint 5.760000e-02

Joint ci ratio: 8.201508e-02	ci left: 5.180501e-02	ci right 5.626002e-02	k: 2160	n:40000
Cons ci ratio: 1.875776e-01	ci left: 9.786385e-03	ci right 1.183556e-02	k: 431	n:40000
KS ci ratio: 1.813676e-02	ci left: 5.337996e-01	ci right 5.435948e-01	k: 21548	n:40000
RALYL   40000 perm   8 sec   (4782 perm/sec)   p_kst 5.387000e-01   p_cons 1.077500e-02   p_joint 5.400000e-02

Joint ci ratio: 8.683629e-02	ci left: 3.745698e-02	ci right 4.087679e-02	k: 1957	n:50000
Cons ci ratio: 1.685656e-01	ci left: 9.797512e-03	ci right 1.161997e-02	k: 534	n:50000
KS ci ratio: 1.727961e-02	ci left: 5.028075e-01	ci right 5.115916e-01	k: 25360	n:50000
RALYL   50000 perm   11 sec   (4647 perm/sec)   p_kst 5.072000e-01   p_cons 1.068000e-02   p_joint 3.914000e-02

Joint ci ratio: 8.189239e-02	ci left: 3.527498e-02	ci right 3.830337e-02	k: 2206	n:60000
Cons ci ratio: 1.546108e-01	ci left: 9.779948e-03	ci right 1.143457e-02	k: 635	n:60000
KS ci ratio: 1.573946e-02	ci left: 5.042911e-01	ci right 5.123081e-01	k: 30498	n:60000
RALYL   60000 perm   13 sec   (4529 perm/sec)   p_kst 5.083000e-01   p_cons 1.058333e-02   p_joint 3.676667e-02

Joint ci ratio: 7.729187e-02	ci left: 3.407127e-02	ci right 3.682455e-02	k: 2480	n:70000
Cons ci ratio: 1.431420e-01	ci left: 9.840773e-03	ci right 1.137163e-02	k: 741	n:70000
KS ci ratio: 1.458113e-02	ci left: 5.042748e-01	ci right 5.116960e-01	k: 35559	n:70000
RALYL   70000 perm   16 sec   (4450 perm/sec)   p_kst 5.079857e-01   p_cons 1.058571e-02   p_joint 3.542857e-02

Joint ci ratio: 6.570229e-02	ci left: 4.119861e-02	ci right 4.400968e-02	k: 3407	n:80000
Cons ci ratio: 1.323289e-01	ci left: 1.013157e-02	ci right 1.157924e-02	k: 867	n:80000
KS ci ratio: 1.366703e-02	ci left: 5.035041e-01	ci right 5.104454e-01	k: 40558	n:80000
RALYL   80000 perm   19 sec   (4319 perm/sec)   p_kst 5.069750e-01   p_cons 1.083750e-02   p_joint 4.258750e-02

Joint ci ratio: 6.270012e-02	ci left: 4.031567e-02	ci right 4.293620e-02	k: 3745	n:90000
Cons ci ratio: 1.248579e-01	ci left: 1.015651e-02	ci right 1.151974e-02	k: 974	n:90000
KS ci ratio: 1.288736e-02	ci left: 5.036280e-01	ci right 5.101716e-01	k: 45621	n:90000
RALYL   90000 perm   21 sec   (4241 perm/sec)   p_kst 5.069000e-01   p_cons 1.082222e-02   p_joint 4.161111e-02

Joint ci ratio: 6.163250e-02	ci left: 3.768042e-02	ci right 4.008642e-02	k: 3887	n:100000
Cons ci ratio: 1.170034e-01	ci left: 1.045014e-02	ci right 1.175845e-02	k: 1109	n:100000
KS ci ratio: 1.222482e-02	ci left: 5.038462e-01	ci right 5.100534e-01	k: 50695	n:100000
RALYL   100000 perm   24 sec   (4163 perm/sec)   p_kst 5.069500e-01   p_cons 1.109000e-02   p_joint 3.887000e-02

Joint ci ratio: 6.335103e-02	ci left: 3.256974e-02	ci right 3.470948e-02	k: 3699	n:110000
Cons ci ratio: 1.162721e-01	ci left: 9.632274e-03	ci right 1.083012e-02	k: 1124	n:110000
KS ci ratio: 1.163380e-02	ci left: 5.049409e-01	ci right 5.108587e-01	k: 55869	n:110000
RALYL   110000 perm   27 sec   (4093 perm/sec)   p_kst 5.079000e-01   p_cons 1.021818e-02   p_joint 3.362727e-02

Joint ci ratio: 5.872673e-02	ci left: 3.474765e-02	ci right 3.685819e-02	k: 4295	n:120000
Cons ci ratio: 1.118422e-01	ci left: 9.566267e-03	ci right 1.070759e-02	k: 1215	n:120000
KS ci ratio: 1.113296e-02	ci left: 5.053171e-01	ci right 5.109825e-01	k: 60978	n:120000
RALYL   120000 perm   30 sec   (4023 perm/sec)   p_kst 5.081500e-01   p_cons 1.012500e-02   p_joint 3.579167e-02

Joint ci ratio: 5.785635e-02	ci left: 3.312001e-02	ci right 3.510085e-02	k: 4433	n:130000
Cons ci ratio: 1.072219e-01	ci left: 9.630950e-03	ci right 1.072953e-02	k: 1322	n:130000
KS ci ratio: 1.069201e-02	ci left: 5.056245e-01	ci right 5.110674e-01	k: 66085	n:130000
RALYL   130000 perm   33 sec   (3957 perm/sec)   p_kst 5.083462e-01   p_cons 1.016923e-02   p_joint 3.410000e-02

Joint ci ratio: 5.714214e-02	ci left: 3.159135e-02	ci right 3.345665e-02	k: 4552	n:140000
Cons ci ratio: 1.027320e-01	ci left: 9.763791e-03	ci right 1.082807e-02	k: 1440	n:140000
KS ci ratio: 1.030301e-02	ci left: 5.057275e-01	ci right 5.109721e-01	k: 71169	n:140000
RALYL   140000 perm   36 sec   (3874 perm/sec)   p_kst 5.083500e-01   p_cons 1.028571e-02   p_joint 3.251429e-02

Joint ci ratio: 5.545897e-02	ci left: 3.133867e-02	ci right 3.313280e-02	k: 4834	n:150000
Cons ci ratio: 9.950708e-02	ci left: 9.730180e-03	ci right 1.075555e-02	k: 1535	n:150000
KS ci ratio: 9.952133e-03	ci left: 5.058932e-01	ci right 5.109598e-01	k: 76264	n:150000
RALYL   150000 perm   39 sec   (3816 perm/sec)   p_kst 5.084267e-01   p_cons 1.023333e-02   p_joint 3.222667e-02

Outputting figure to mutsig2_images.part000000000143/RALYL.8_951_150000_0.50843_0.010233_0.032227.png
                gene_name: RALYL
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 19 percent done.
RANBP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
Cons ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
KS ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
RANBP17   10000 perm   2 sec   (4919 perm/sec)   p_kst 2.733000e-01   p_cons 2.384000e-01   p_joint 2.855000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP17.8_3379_10000_0.2733_0.2384_0.2855.png
                gene_name: RANBP17
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 21 percent done.
RAPGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
RAPGEF6   10000 perm   2 sec   (4183 perm/sec)   p_kst 8.237000e-01   p_cons 5.610000e-02   p_joint 1.963000e-01

Joint ci ratio: 6.386703e-02	ci left: 1.534141e-01	ci right 1.635854e-01	k: 3169	n:20000
Cons ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
KS ci ratio: 1.267822e-02	ci left: 8.216854e-01	ci right 8.322193e-01	k: 16540	n:20000
RAPGEF6   20000 perm   5 sec   (3831 perm/sec)   p_kst 8.270000e-01   p_cons 5.360000e-02   p_joint 1.584500e-01

Joint ci ratio: 5.098011e-02	ci left: 1.604198e-01	ci right 1.688452e-01	k: 4938	n:30000
Cons ci ratio: 9.512983e-02	ci left: 5.101286e-02	ci right 5.614069e-02	k: 1606	n:30000
KS ci ratio: 1.029729e-02	ci left: 8.241861e-01	ci right 8.327502e-01	k: 24855	n:30000
RAPGEF6   30000 perm   8 sec   (3683 perm/sec)   p_kst 8.285000e-01   p_cons 5.353333e-02   p_joint 1.646000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF6.8_5404_30000_0.8285_0.053533_0.1646.png
                gene_name: RAPGEF6
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 22 percent done.
RAI14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
Cons ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
KS ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
RAI14   10000 perm   2 sec   (4641 perm/sec)   p_kst 5.652000e-01   p_cons 3.486000e-01   p_joint 6.301000e-01

Outputting figure to mutsig2_images.part000000000143/RAI14.7_3076_10000_0.5652_0.3486_0.6301.png
                gene_name: RAI14
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 24 percent done.
RASAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
Cons ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
RASAL1   10000 perm   2 sec   (5334 perm/sec)   p_kst 1.390000e-02   p_cons 6.776000e-01   p_joint 3.880000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 1.933383e-02	ci left: 6.661472e-01	ci right 6.792026e-01	k: 13454	n:20000
KS ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
RASAL1   20000 perm   4 sec   (4807 perm/sec)   p_kst 1.385000e-02   p_cons 6.727000e-01   p_joint 3.580000e-02

Joint ci ratio: 1.125941e-01	ci left: 3.664280e-02	ci right 4.104708e-02	k: 1164	n:30000
Cons ci ratio: 1.571455e-02	ci left: 6.693653e-01	ci right 6.800009e-01	k: 20241	n:30000
KS ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
RASAL1   30000 perm   6 sec   (4621 perm/sec)   p_kst 1.413333e-02   p_cons 6.747000e-01   p_joint 3.880000e-02

Joint ci ratio: 9.103535e-02	ci left: 4.227977e-02	ci right 4.633672e-02	k: 1771	n:40000
Cons ci ratio: 1.363098e-02	ci left: 6.693814e-01	ci right 6.785934e-01	k: 26960	n:40000
KS ci ratio: 1.643358e-01	ci left: 1.287150e-02	ci right 1.519984e-02	k: 560	n:40000
RASAL1   40000 perm   9 sec   (4490 perm/sec)   p_kst 1.400000e-02   p_cons 6.740000e-01   p_joint 4.427500e-02

Joint ci ratio: 9.082082e-02	ci left: 3.428630e-02	ci right 3.756786e-02	k: 1795	n:50000
Cons ci ratio: 1.267217e-02	ci left: 6.526195e-01	ci right 6.609623e-01	k: 32840	n:50000
KS ci ratio: 1.475480e-01	ci left: 1.289210e-02	ci right 1.496490e-02	k: 695	n:50000
RASAL1   50000 perm   11 sec   (4364 perm/sec)   p_kst 1.390000e-02   p_cons 6.568000e-01   p_joint 3.590000e-02

Joint ci ratio: 8.019135e-02	ci left: 3.676204e-02	ci right 3.984949e-02	k: 2297	n:60000
Cons ci ratio: 1.156381e-02	ci left: 6.531523e-01	ci right 6.607658e-01	k: 39418	n:60000
KS ci ratio: 1.342207e-01	ci left: 1.307513e-02	ci right 1.497231e-02	k: 840	n:60000
RASAL1   60000 perm   14 sec   (4261 perm/sec)   p_kst 1.400000e-02   p_cons 6.569667e-01   p_joint 3.828333e-02

Joint ci ratio: 7.447423e-02	ci left: 3.665178e-02	ci right 3.950096e-02	k: 2664	n:70000
Cons ci ratio: 1.029442e-02	ci left: 6.709286e-01	ci right 6.778855e-01	k: 47209	n:70000
KS ci ratio: 1.263822e-01	ci left: 1.269969e-02	ci right 1.442670e-02	k: 948	n:70000
RASAL1   70000 perm   17 sec   (4170 perm/sec)   p_kst 1.354286e-02   p_cons 6.744143e-01   p_joint 3.805714e-02

Joint ci ratio: 6.599612e-02	ci left: 4.084183e-02	ci right 4.364149e-02	k: 3378	n:80000
Cons ci ratio: 9.623024e-03	ci left: 6.714536e-01	ci right 6.779587e-01	k: 53977	n:80000
KS ci ratio: 1.184176e-01	ci left: 1.271175e-02	ci right 1.432382e-02	k: 1080	n:80000
RASAL1   80000 perm   20 sec   (4082 perm/sec)   p_kst 1.350000e-02   p_cons 6.747125e-01   p_joint 4.222500e-02

Joint ci ratio: 6.044515e-02	ci left: 4.329338e-02	ci right 4.600273e-02	k: 4017	n:90000
Cons ci ratio: 9.075008e-03	ci left: 6.715279e-01	ci right 6.776609e-01	k: 60714	n:90000
KS ci ratio: 1.107316e-01	ci left: 1.297233e-02	ci right 1.450370e-02	k: 1235	n:90000
RASAL1   90000 perm   23 sec   (3999 perm/sec)   p_kst 1.372222e-02   p_cons 6.746000e-01   p_joint 4.463333e-02

Joint ci ratio: 6.075975e-02	ci left: 3.874454e-02	ci right 4.118223e-02	k: 3995	n:100000
Cons ci ratio: 8.617945e-03	ci left: 6.712451e-01	ci right 6.770648e-01	k: 67416	n:100000
KS ci ratio: 1.053348e-01	ci left: 1.293997e-02	ci right 1.438845e-02	k: 1365	n:100000
RASAL1   100000 perm   26 sec   (3920 perm/sec)   p_kst 1.365000e-02   p_cons 6.741600e-01   p_joint 3.995000e-02

Joint ci ratio: 5.951987e-02	ci left: 3.680609e-02	ci right 3.907290e-02	k: 4172	n:110000
Cons ci ratio: 8.217505e-03	ci left: 6.713484e-01	ci right 6.768970e-01	k: 74154	n:110000
KS ci ratio: 1.006913e-01	ci left: 1.290611e-02	ci right 1.428335e-02	k: 1494	n:110000
RASAL1   110000 perm   29 sec   (3850 perm/sec)   p_kst 1.358182e-02   p_cons 6.741273e-01   p_joint 3.792727e-02

Joint ci ratio: 5.767666e-02	ci left: 3.599656e-02	ci right 3.814256e-02	k: 4447	n:120000
Cons ci ratio: 7.856816e-03	ci left: 6.720744e-01	ci right 6.773838e-01	k: 80968	n:120000
KS ci ratio: 9.616311e-02	ci left: 1.300110e-02	ci right 1.432256e-02	k: 1638	n:120000
RASAL1   120000 perm   32 sec   (3789 perm/sec)   p_kst 1.365000e-02   p_cons 6.747333e-01   p_joint 3.705833e-02

Outputting figure to mutsig2_images.part000000000143/RASAL1.7_2499_120000_0.01365_0.67473_0.037058.png
                gene_name: RASAL1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 26 percent done.
RAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
Cons ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
RAG2   10000 perm   2 sec   (6120 perm/sec)   p_kst 4.020000e-02   p_cons 8.031000e-01   p_joint 1.172000e-01

Joint ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
Cons ci ratio: 1.387471e-02	ci left: 7.940344e-01	ci right 8.051784e-01	k: 15993	n:20000
KS ci ratio: 1.377751e-01	ci left: 3.621414e-02	ci right 4.162097e-02	k: 777	n:20000
RAG2   20000 perm   4 sec   (5534 perm/sec)   p_kst 3.885000e-02   p_cons 7.996500e-01   p_joint 8.815000e-02

Joint ci ratio: 7.815505e-02	ci left: 7.433501e-02	ci right 8.041380e-02	k: 2320	n:30000
Cons ci ratio: 1.137511e-02	ci left: 7.937474e-01	ci right 8.028614e-01	k: 23950	n:30000
KS ci ratio: 1.125941e-01	ci left: 3.664280e-02	ci right 4.104708e-02	k: 1164	n:30000
RAG2   30000 perm   6 sec   (5298 perm/sec)   p_kst 3.880000e-02   p_cons 7.983333e-01   p_joint 7.733333e-02

Joint ci ratio: 6.625259e-02	ci left: 7.780258e-02	ci right 8.315851e-02	k: 3218	n:40000
Cons ci ratio: 9.777120e-03	ci left: 7.968013e-01	ci right 8.046550e-01	k: 32030	n:40000
KS ci ratio: 9.381139e-02	ci left: 3.985957e-02	ci right 4.380730e-02	k: 1672	n:40000
RAG2   40000 perm   8 sec   (5143 perm/sec)   p_kst 4.180000e-02   p_cons 8.007500e-01   p_joint 8.045000e-02

Outputting figure to mutsig2_images.part000000000143/RAG2.6_1588_40000_0.0418_0.80075_0.08045.png
                gene_name: RAG2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 28 percent done.
RAP1GDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
KS ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
RAP1GDS1   10000 perm   2 sec   (5223 perm/sec)   p_kst 4.117000e-01   p_cons 1.053000e-01   p_joint 2.530000e-01

Joint ci ratio: 4.460876e-02	ci left: 2.722951e-01	ci right 2.847694e-01	k: 5570	n:20000
Cons ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
KS ci ratio: 3.314507e-02	ci left: 4.046682e-01	ci right 4.183576e-01	k: 8230	n:20000
RAP1GDS1   20000 perm   4 sec   (4712 perm/sec)   p_kst 4.115000e-01   p_cons 1.142000e-01   p_joint 2.785000e-01

Outputting figure to mutsig2_images.part000000000143/RAP1GDS1.6_1887_20000_0.4115_0.1142_0.2785.png
                gene_name: RAP1GDS1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 29 percent done.
RAPGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
Cons ci ratio: 4.709308e-02	ci left: 3.995407e-01	ci right 4.189122e-01	k: 4092	n:10000
KS ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
RAPGEF4   10000 perm   2 sec   (5113 perm/sec)   p_kst 7.988000e-01   p_cons 4.092000e-01   p_joint 8.784000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF4.6_3176_10000_0.7988_0.4092_0.8784.png
                gene_name: RAPGEF4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 31 percent done.
RASA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
RASA3   10000 perm   2 sec   (4964 perm/sec)   p_kst 3.655000e-01   p_cons 7.655000e-01   p_joint 4.919000e-01

Outputting figure to mutsig2_images.part000000000143/RASA3.6_2601_10000_0.3655_0.7655_0.4919.png
                gene_name: RASA3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
RASGEF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
Cons ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
RASGEF1B   10000 perm   2 sec   (5753 perm/sec)   p_kst 1.711000e-01   p_cons 2.499000e-01   p_joint 2.631000e-01

Outputting figure to mutsig2_images.part000000000143/RASGEF1B.6_1474_10000_0.1711_0.2499_0.2631.png
                gene_name: RASGEF1B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 34 percent done.
RALGPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
Cons ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
RALGPS2   10000 perm   2 sec   (5479 perm/sec)   p_kst 5.986000e-01   p_cons 8.156000e-01   p_joint 7.583000e-01

Outputting figure to mutsig2_images.part000000000143/RALGPS2.5_1828_10000_0.5986_0.8156_0.7583.png
                gene_name: RALGPS2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 36 percent done.
RANBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
RANBP3   10000 perm   2 sec   (6173 perm/sec)   p_kst 7.302000e-01   p_cons 9.640000e-02   p_joint 3.056000e-01

Joint ci ratio: 3.983317e-02	ci left: 3.197032e-01	ci right 3.327473e-01	k: 6524	n:20000
Cons ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
KS ci ratio: 1.667765e-02	ci left: 7.280189e-01	ci right 7.403130e-01	k: 14684	n:20000
RANBP3   20000 perm   4 sec   (5446 perm/sec)   p_kst 7.342000e-01   p_cons 9.745000e-02   p_joint 3.262000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP3.5_1772_20000_0.7342_0.09745_0.3262.png
                gene_name: RANBP3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 38 percent done.
RARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
Cons ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
KS ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
RARS   10000 perm   2 sec   (5446 perm/sec)   p_kst 2.128000e-01   p_cons 6.880000e-02   p_joint 1.776000e-01

Joint ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
Cons ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
KS ci ratio: 5.395651e-02	ci left: 2.031351e-01	ci right 2.144497e-01	k: 4175	n:20000
RARS   20000 perm   4 sec   (4933 perm/sec)   p_kst 2.087500e-01   p_cons 7.085000e-02   p_joint 1.028000e-01

Joint ci ratio: 5.886889e-02	ci left: 1.249630e-01	ci right 1.325757e-01	k: 3862	n:30000
Cons ci ratio: 8.226056e-02	ci left: 6.746482e-02	ci right 7.328538e-02	k: 2110	n:30000
KS ci ratio: 4.450939e-02	ci left: 2.008405e-01	ci right 2.100166e-01	k: 6162	n:30000
RARS   30000 perm   6 sec   (4704 perm/sec)   p_kst 2.054000e-01   p_cons 7.033333e-02   p_joint 1.287333e-01

Outputting figure to mutsig2_images.part000000000143/RARS.5_2043_30000_0.2054_0.070333_0.12873.png
                gene_name: RARS
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
RAD23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.523414e-02	ci left: 6.979701e-01	ci right 7.159092e-01	k: 7070	n:10000
Cons ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
KS ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
RAD23B   10000 perm   1 sec   (6861 perm/sec)   p_kst 6.573000e-01   p_cons 1.639000e-01   p_joint 7.070000e-01

Outputting figure to mutsig2_images.part000000000143/RAD23B.4_1270_10000_0.6573_0.1639_0.707.png
                gene_name: RAD23B
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 41 percent done.
RAD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.099927e-02	ci left: 6.055814e-01	ci right 6.247515e-01	k: 6152	n:10000
Cons ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
KS ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
RAD52   10000 perm   2 sec   (6023 perm/sec)   p_kst 3.472000e-01   p_cons 6.326000e-01   p_joint 6.152000e-01

Outputting figure to mutsig2_images.part000000000143/RAD52.4_1301_10000_0.3472_0.6326_0.6152.png
                gene_name: RAD52
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 43 percent done.
RAD54L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
RAD54L2   10000 perm   2 sec   (4833 perm/sec)   p_kst 4.761000e-01   p_cons 1.530000e-01   p_joint 4.070000e-01

Outputting figure to mutsig2_images.part000000000143/RAD54L2.4_4488_10000_0.4761_0.153_0.407.png
                gene_name: RAD54L2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
RAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
Cons ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
KS ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
RAI2   10000 perm   2 sec   (5698 perm/sec)   p_kst 8.070000e-02   p_cons 9.820000e-01   p_joint 2.031000e-01

Joint ci ratio: 6.147508e-02	ci left: 1.637309e-01	ci right 1.741655e-01	k: 3378	n:20000
Cons ci ratio: 3.714973e-03	ci left: 9.804809e-01	ci right 9.841770e-01	k: 19648	n:20000
KS ci ratio: 9.295830e-02	ci left: 7.784205e-02	ci right 8.548010e-02	k: 1632	n:20000
RAI2   20000 perm   4 sec   (5144 perm/sec)   p_kst 8.160000e-02   p_cons 9.824000e-01   p_joint 1.689000e-01

Outputting figure to mutsig2_images.part000000000143/RAI2.4_1597_20000_0.0816_0.9824_0.1689.png
                gene_name: RAI2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 47 percent done.
RANBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
KS ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
RANBP10   10000 perm   2 sec   (5707 perm/sec)   p_kst 7.370000e-01   p_cons 8.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANBP10.4_1919_10000_0.737_0.8608_1.png
                gene_name: RANBP10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
RANBP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
Cons ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
KS ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
RANBP3L   10000 perm   2 sec   (5842 perm/sec)   p_kst 8.854000e-01   p_cons 2.699000e-01   p_joint 5.957000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP3L.4_1533_10000_0.8854_0.2699_0.5957.png
                gene_name: RANBP3L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 50 percent done.
RANBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
KS ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
RANBP6   10000 perm   2 sec   (5201 perm/sec)   p_kst 9.780000e-01   p_cons 4.377000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANBP6.4_3322_10000_0.978_0.4377_1.png
                gene_name: RANBP6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
RAP1GAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
RAP1GAP   10000 perm   2 sec   (5808 perm/sec)   p_kst 1.726000e-01   p_cons 1.070000e-02   p_joint 7.110000e-02

Joint ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
Cons ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
KS ci ratio: 6.023501e-02	ci left: 1.694601e-01	ci right 1.800346e-01	k: 3494	n:20000
RAP1GAP   20000 perm   4 sec   (5193 perm/sec)   p_kst 1.747000e-01   p_cons 9.950000e-03   p_joint 6.060000e-02

Joint ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
Cons ci ratio: 2.248050e-01	ci left: 8.905068e-03	ci right 1.119132e-02	k: 300	n:30000
KS ci ratio: 4.879050e-02	ci left: 1.727289e-01	ci right 1.814004e-01	k: 5311	n:30000
RAP1GAP   30000 perm   6 sec   (4962 perm/sec)   p_kst 1.770333e-01   p_cons 1.000000e-02   p_joint 5.413333e-02

Joint ci ratio: 8.532126e-02	ci left: 4.798238e-02	ci right 5.228323e-02	k: 2004	n:40000
Cons ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
KS ci ratio: 4.237635e-02	ci left: 1.724775e-01	ci right 1.799696e-01	k: 7048	n:40000
RAP1GAP   40000 perm   8 sec   (4807 perm/sec)   p_kst 1.762000e-01   p_cons 9.950000e-03   p_joint 5.010000e-02

Joint ci ratio: 8.258221e-02	ci left: 4.133651e-02	ci right 4.491678e-02	k: 2155	n:50000
Cons ci ratio: 1.775008e-01	ci left: 8.802120e-03	ci right 1.053552e-02	k: 482	n:50000
KS ci ratio: 3.774217e-02	ci left: 1.741001e-01	ci right 1.808174e-01	k: 8872	n:50000
RAP1GAP   50000 perm   11 sec   (4686 perm/sec)   p_kst 1.774400e-01   p_cons 9.640000e-03   p_joint 4.310000e-02

Joint ci ratio: 6.781540e-02	ci left: 5.095832e-02	ci right 5.455176e-02	k: 3164	n:60000
Cons ci ratio: 1.461367e-01	ci left: 1.098343e-02	ci right 1.273094e-02	k: 710	n:60000
KS ci ratio: 3.468687e-02	ci left: 1.724471e-01	ci right 1.785510e-01	k: 10529	n:60000
RAP1GAP   60000 perm   13 sec   (4579 perm/sec)   p_kst 1.754833e-01   p_cons 1.183333e-02   p_joint 5.273333e-02

Joint ci ratio: 5.626594e-02	ci left: 6.301548e-02	ci right 6.667783e-02	k: 4538	n:70000
Cons ci ratio: 1.353377e-01	ci left: 1.104081e-02	ci right 1.265718e-02	k: 828	n:70000
KS ci ratio: 3.219491e-02	ci left: 1.719503e-01	ci right 1.775910e-01	k: 12233	n:70000
RAP1GAP   70000 perm   16 sec   (4483 perm/sec)   p_kst 1.747571e-01   p_cons 1.182857e-02   p_joint 6.482857e-02

Joint ci ratio: 5.778205e-02	ci left: 5.282595e-02	ci right 5.598146e-02	k: 4351	n:80000
Cons ci ratio: 1.262219e-01	ci left: 1.116008e-02	ci right 1.267562e-02	k: 952	n:80000
KS ci ratio: 3.012566e-02	ci left: 1.720371e-01	ci right 1.773115e-01	k: 13973	n:80000
RAP1GAP   80000 perm   18 sec   (4396 perm/sec)   p_kst 1.746625e-01   p_cons 1.190000e-02   p_joint 5.438750e-02

Joint ci ratio: 4.998870e-02	ci left: 6.235458e-02	ci right 6.556248e-02	k: 5755	n:90000
Cons ci ratio: 1.187862e-01	ci left: 1.124491e-02	ci right 1.267569e-02	k: 1075	n:90000
KS ci ratio: 2.835769e-02	ci left: 1.726441e-01	ci right 1.776213e-01	k: 15761	n:90000
RAP1GAP   90000 perm   21 sec   (4323 perm/sec)   p_kst 1.751222e-01   p_cons 1.194444e-02   p_joint 6.394444e-02

Joint ci ratio: 5.234666e-02	ci left: 5.170832e-02	ci right 5.449768e-02	k: 5309	n:100000
Cons ci ratio: 1.130045e-01	ci left: 1.121766e-02	ci right 1.257087e-02	k: 1188	n:100000
KS ci ratio: 2.682483e-02	ci left: 1.736043e-01	ci right 1.783345e-01	k: 17596	n:100000
RAP1GAP   100000 perm   24 sec   (4255 perm/sec)   p_kst 1.759600e-01   p_cons 1.188000e-02   p_joint 5.309000e-02

Joint ci ratio: 5.107064e-02	ci left: 4.953659e-02	ci right 5.214170e-02	k: 5591	n:110000
Cons ci ratio: 1.071625e-01	ci left: 1.137374e-02	ci right 1.267036e-02	k: 1321	n:110000
KS ci ratio: 2.555541e-02	ci left: 1.739525e-01	ci right 1.784645e-01	k: 19382	n:110000
RAP1GAP   110000 perm   26 sec   (4182 perm/sec)   p_kst 1.762000e-01   p_cons 1.200909e-02   p_joint 5.082727e-02

Joint ci ratio: 4.847660e-02	ci left: 5.042095e-02	ci right 5.293411e-02	k: 6200	n:120000
Cons ci ratio: 1.029325e-01	ci left: 1.132661e-02	ci right 1.256381e-02	k: 1432	n:120000
KS ci ratio: 2.445909e-02	ci left: 1.741476e-01	ci right 1.784681e-01	k: 21156	n:120000
RAP1GAP   120000 perm   29 sec   (4114 perm/sec)   p_kst 1.763000e-01   p_cons 1.193333e-02   p_joint 5.166667e-02

Joint ci ratio: 5.335840e-02	ci left: 3.879691e-02	ci right 4.093137e-02	k: 5181	n:130000
Cons ci ratio: 9.932969e-02	ci left: 1.125007e-02	ci right 1.243339e-02	k: 1538	n:130000
KS ci ratio: 2.348094e-02	ci left: 1.744616e-01	ci right 1.786144e-01	k: 22949	n:130000
RAP1GAP   130000 perm   32 sec   (4046 perm/sec)   p_kst 1.765308e-01   p_cons 1.183077e-02   p_joint 3.985385e-02

Outputting figure to mutsig2_images.part000000000143/RAP1GAP.4_2362_130000_0.17653_0.011831_0.039854.png
                gene_name: RAP1GAP
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 53 percent done.
RAPGEF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
Cons ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
RAPGEF5   10000 perm   2 sec   (5963 perm/sec)   p_kst 3.563000e-01   p_cons 9.185000e-01   p_joint 7.030000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF5.4_2285_10000_0.3563_0.9185_0.703.png
                gene_name: RAPGEF5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 55 percent done.
RAPGEFL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 5.303562e-02	ci left: 3.438259e-01	ci right 3.626596e-01	k: 3532	n:10000
KS ci ratio: 6.275439e-03	ci left: 9.718541e-01	ci right 9.780650e-01	k: 9751	n:10000
RAPGEFL1   10000 perm   2 sec   (5900 perm/sec)   p_kst 9.751000e-01   p_cons 3.532000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEFL1.4_1423_10000_0.9751_0.3532_0.767.png
                gene_name: RAPGEFL1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 57 percent done.
RAD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
KS ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
RAD50   10000 perm   2 sec   (5318 perm/sec)   p_kst 5.155000e-01   p_cons 7.622000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAD50.3_4039_10000_0.5155_0.7622_1.png
                gene_name: RAD50
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
RAD51C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
Cons ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
RAD51C   10000 perm   2 sec   (6192 perm/sec)   p_kst 8.870000e-02   p_cons 9.013000e-01   p_joint 2.445000e-01

Joint ci ratio: 5.894151e-02	ci left: 1.757351e-01	ci right 1.864578e-01	k: 3621	n:20000
Cons ci ratio: 9.210069e-03	ci left: 8.963700e-01	ci right 9.047132e-01	k: 18012	n:20000
KS ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
RAD51C   20000 perm   4 sec   (5523 perm/sec)   p_kst 9.060000e-02   p_cons 9.006000e-01   p_joint 1.810500e-01

Outputting figure to mutsig2_images.part000000000143/RAD51C.3_1171_20000_0.0906_0.9006_0.18105.png
                gene_name: RAD51C
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 60 percent done.
RAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
RAF1   10000 perm   2 sec   (5993 perm/sec)   p_kst 3.240000e-01   p_cons 2.069000e-01   p_joint 3.048000e-01

Outputting figure to mutsig2_images.part000000000143/RAF1.3_2011_10000_0.324_0.2069_0.3048.png
                gene_name: RAF1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 62 percent done.
RAGE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
Cons ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
KS ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
RAGE   10000 perm   2 sec   (6243 perm/sec)   p_kst 4.970000e-02   p_cons 7.900000e-03   p_joint 6.530000e-02

Joint ci ratio: 6.426499e-02	ci left: 1.517858e-01	ci right 1.619141e-01	k: 3136	n:20000
Cons ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
KS ci ratio: 1.197522e-01	ci left: 4.779719e-02	ci right 5.393423e-02	k: 1016	n:20000
RAGE   20000 perm   4 sec   (5525 perm/sec)   p_kst 5.080000e-02   p_cons 8.200000e-03   p_joint 1.568000e-01

Joint ci ratio: 7.799128e-02	ci left: 7.462962e-02	ci right 8.071914e-02	k: 2329	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
RAGE   30000 perm   6 sec   (5270 perm/sec)   p_kst 5.096667e-02   p_cons 8.533333e-03   p_joint 7.763333e-02

Joint ci ratio: 4.174157e-02	ci left: 1.768657e-01	ci right 1.844307e-01	k: 7225	n:40000
Cons ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
KS ci ratio: 8.443822e-02	ci left: 4.896221e-02	ci right 5.330325e-02	k: 2044	n:40000
RAGE   40000 perm   8 sec   (5100 perm/sec)   p_kst 5.110000e-02   p_cons 8.725000e-03   p_joint 1.806250e-01

Joint ci ratio: 2.833792e-02	ci left: 2.728415e-01	ci right 2.807044e-01	k: 13838	n:50000
Cons ci ratio: 1.880023e-01	ci left: 7.809280e-03	ci right 9.448536e-03	k: 430	n:50000
KS ci ratio: 7.630181e-02	ci left: 4.822366e-02	ci right 5.206879e-02	k: 2506	n:50000
RAGE   50000 perm   10 sec   (4964 perm/sec)   p_kst 5.012000e-02   p_cons 8.600000e-03   p_joint 2.767600e-01

Joint ci ratio: 2.595616e-02	ci left: 2.718448e-01	ci right 2.790103e-01	k: 16525	n:60000
Cons ci ratio: 1.743985e-01	ci left: 7.621474e-03	ci right 9.093342e-03	k: 500	n:60000
KS ci ratio: 6.991599e-02	ci left: 4.804011e-02	ci right 5.153693e-02	k: 2986	n:60000
RAGE   60000 perm   12 sec   (4847 perm/sec)   p_kst 4.976667e-02   p_cons 8.333333e-03   p_joint 2.754167e-01

Joint ci ratio: 2.504405e-02	ci left: 2.559994e-01	ci right 2.625062e-01	k: 18147	n:70000
Cons ci ratio: 1.616712e-01	ci left: 7.654922e-03	ci right 9.014878e-03	k: 582	n:70000
KS ci ratio: 6.503304e-02	ci left: 4.773592e-02	ci right 5.095871e-02	k: 3453	n:70000
RAGE   70000 perm   15 sec   (4730 perm/sec)   p_kst 4.932857e-02   p_cons 8.314286e-03   p_joint 2.592429e-01

Joint ci ratio: 2.334191e-02	ci left: 2.575980e-01	ci right 2.636943e-01	k: 20851	n:80000
Cons ci ratio: 1.525378e-01	ci left: 7.562666e-03	ci right 8.823391e-03	k: 654	n:80000
KS ci ratio: 6.064267e-02	ci left: 4.813023e-02	ci right 5.115254e-02	k: 3970	n:80000
RAGE   80000 perm   17 sec   (4632 perm/sec)   p_kst 4.962500e-02   p_cons 8.175000e-03   p_joint 2.606375e-01

Joint ci ratio: 2.118547e-02	ci left: 2.726493e-01	ci right 2.784985e-01	k: 24801	n:90000
Cons ci ratio: 1.423485e-01	ci left: 7.760478e-03	ci right 8.960423e-03	k: 751	n:90000
KS ci ratio: 5.715683e-02	ci left: 4.824531e-02	ci right 5.109492e-02	k: 4469	n:90000
RAGE   90000 perm   20 sec   (4543 perm/sec)   p_kst 4.965556e-02   p_cons 8.344444e-03   p_joint 2.755667e-01

Joint ci ratio: 2.951554e-02	ci left: 1.477225e-01	ci right 1.521578e-01	k: 14993	n:100000
Cons ci ratio: 1.369197e-01	ci left: 7.573072e-03	ci right 8.695738e-03	k: 812	n:100000
KS ci ratio: 5.408449e-02	ci left: 4.855854e-02	ci right 5.126764e-02	k: 4990	n:100000
RAGE   100000 perm   22 sec   (4458 perm/sec)   p_kst 4.990000e-02   p_cons 8.120000e-03   p_joint 1.499300e-01

Joint ci ratio: 2.814237e-02	ci left: 1.478223e-01	ci right 1.520507e-01	k: 16492	n:110000
Cons ci ratio: 1.298398e-01	ci left: 7.684320e-03	ci right 8.760033e-03	k: 903	n:110000
KS ci ratio: 5.165724e-02	ci left: 4.845898e-02	ci right 5.103756e-02	k: 5471	n:110000
RAGE   110000 perm   25 sec   (4378 perm/sec)   p_kst 4.973636e-02   p_cons 8.209091e-03   p_joint 1.499273e-01

Joint ci ratio: 2.094814e-02	ci left: 2.235199e-01	ci right 2.282600e-01	k: 27106	n:120000
Cons ci ratio: 1.245788e-01	ci left: 7.673277e-03	ci right 8.700704e-03	k: 981	n:120000
KS ci ratio: 4.942955e-02	ci left: 4.856771e-02	ci right 5.103744e-02	k: 5975	n:120000
RAGE   120000 perm   28 sec   (4300 perm/sec)   p_kst 4.979167e-02   p_cons 8.175000e-03   p_joint 2.258833e-01

Joint ci ratio: 1.976574e-02	ci left: 2.299759e-01	ci right 2.345745e-01	k: 30195	n:130000
Cons ci ratio: 1.189515e-01	ci left: 7.791570e-03	ci right 8.784397e-03	k: 1076	n:130000
KS ci ratio: 4.749425e-02	ci left: 4.860850e-02	ci right 5.098086e-02	k: 6472	n:130000
RAGE   130000 perm   31 sec   (4226 perm/sec)   p_kst 4.978462e-02   p_cons 8.276923e-03   p_joint 2.322692e-01

Joint ci ratio: 1.903141e-02	ci left: 2.303462e-01	ci right 2.347792e-01	k: 32558	n:140000
Cons ci ratio: 1.149672e-01	ci left: 7.761999e-03	ci right 8.715680e-03	k: 1152	n:140000
KS ci ratio: 4.590164e-02	ci left: 4.837661e-02	ci right 5.065638e-02	k: 6931	n:140000
RAGE   140000 perm   34 sec   (4152 perm/sec)   p_kst 4.950714e-02   p_cons 8.228571e-03   p_joint 2.325571e-01

Joint ci ratio: 1.841072e-02	ci left: 2.299455e-01	ci right 2.342249e-01	k: 34812	n:150000
Cons ci ratio: 1.109042e-01	ci left: 7.801681e-03	ci right 8.724145e-03	k: 1238	n:150000
KS ci ratio: 4.436137e-02	ci left: 4.838130e-02	ci right 5.058282e-02	k: 7421	n:150000
RAGE   150000 perm   37 sec   (4078 perm/sec)   p_kst 4.947333e-02   p_cons 8.253333e-03   p_joint 2.320800e-01

Joint ci ratio: 1.792256e-02	ci left: 2.281017e-01	ci right 2.322331e-01	k: 36826	n:160000
Cons ci ratio: 1.068781e-01	ci left: 7.891676e-03	ci right 8.788777e-03	k: 1333	n:160000
KS ci ratio: 4.289802e-02	ci left: 4.853500e-02	ci right 5.066886e-02	k: 7935	n:160000
RAGE   160000 perm   40 sec   (4010 perm/sec)   p_kst 4.959375e-02   p_cons 8.331250e-03   p_joint 2.301625e-01

Joint ci ratio: 1.757856e-02	ci left: 2.243244e-01	ci right 2.283085e-01	k: 38473	n:170000
Cons ci ratio: 1.034069e-01	ci left: 7.948691e-03	ci right 8.821141e-03	k: 1424	n:170000
KS ci ratio: 4.169530e-02	ci left: 4.839211e-02	ci right 5.045859e-02	k: 8401	n:170000
RAGE   170000 perm   43 sec   (3942 perm/sec)   p_kst 4.941765e-02   p_cons 8.376471e-03   p_joint 2.263118e-01

Joint ci ratio: 1.707088e-02	ci left: 2.246345e-01	ci right 2.285077e-01	k: 40782	n:180000
Cons ci ratio: 1.004204e-01	ci left: 7.972702e-03	ci right 8.821024e-03	k: 1510	n:180000
KS ci ratio: 4.049001e-02	ci left: 4.849143e-02	ci right 5.050089e-02	k: 8908	n:180000
RAGE   180000 perm   46 sec   (3881 perm/sec)   p_kst 4.948889e-02   p_cons 8.388889e-03   p_joint 2.265667e-01

Joint ci ratio: 1.663274e-02	ci left: 2.243256e-01	ci right 2.280933e-01	k: 42979	n:190000
Cons ci ratio: 9.780223e-02	ci left: 7.973967e-03	ci right 8.799033e-03	k: 1592	n:190000
KS ci ratio: 3.942099e-02	ci left: 4.849242e-02	ci right 5.044767e-02	k: 9398	n:190000
RAGE   190000 perm   50 sec   (3822 perm/sec)   p_kst 4.946316e-02   p_cons 8.378947e-03   p_joint 2.262053e-01

Outputting figure to mutsig2_images.part000000000143/RAGE.3_1308_190000_0.049463_0.0083789_0.22621.png
                gene_name: RAGE
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.0084 
      ci_cons_bounds_left: 0.0080 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 64 percent done.
RAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
Cons ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
RAI1   10000 perm   2 sec   (4742 perm/sec)   p_kst 4.220000e-02   p_cons 4.527000e-01   p_joint 1.937000e-01

Joint ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
Cons ci ratio: 3.030631e-02	ci left: 4.485299e-01	ci right 4.623830e-01	k: 9109	n:20000
KS ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
RAI1   20000 perm   5 sec   (4336 perm/sec)   p_kst 3.975000e-02   p_cons 4.554500e-01   p_joint 1.180500e-01

Joint ci ratio: 6.689651e-02	ci left: 9.925397e-02	ci right 1.061565e-01	k: 3080	n:30000
Cons ci ratio: 2.468012e-02	ci left: 4.511177e-01	ci right 4.624240e-01	k: 13703	n:30000
KS ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
RAI1   30000 perm   7 sec   (4204 perm/sec)   p_kst 3.900000e-02   p_cons 4.567667e-01   p_joint 1.026667e-01

Joint ci ratio: 5.966505e-02	ci left: 9.448647e-02	ci right 1.003221e-01	k: 3895	n:40000
Cons ci ratio: 2.137462e-02	ci left: 4.518592e-01	ci right 4.616470e-01	k: 18270	n:40000
KS ci ratio: 9.636447e-02	ci left: 3.780753e-02	ci right 4.165966e-02	k: 1588	n:40000
RAI1   40000 perm   10 sec   (4113 perm/sec)   p_kst 3.970000e-02   p_cons 4.567500e-01   p_joint 9.737500e-02

Outputting figure to mutsig2_images.part000000000143/RAI1.3_5737_40000_0.0397_0.45675_0.097375.png
                gene_name: RAI1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 66 percent done.
RALGPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
KS ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
RALGPS1   10000 perm   2 sec   (6627 perm/sec)   p_kst 7.056000e-01   p_cons 8.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALGPS1.3_1746_10000_0.7056_0.8916_1.png
                gene_name: RALGPS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
RANBP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
RANBP9   10000 perm   2 sec   (5889 perm/sec)   p_kst 4.981000e-01   p_cons 3.700000e-03   p_joint 1.800000e-01

Joint ci ratio: 9.951067e-02	ci left: 6.840617e-02	ci right 7.561886e-02	k: 1439	n:20000
Cons ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
KS ci ratio: 2.803146e-02	ci left: 4.873972e-01	ci right 5.013045e-01	k: 9887	n:20000
RANBP9   20000 perm   4 sec   (5274 perm/sec)   p_kst 4.943500e-01   p_cons 3.250000e-03   p_joint 7.195000e-02

Joint ci ratio: 6.130671e-02	ci left: 1.162444e-01	ci right 1.236294e-01	k: 3597	n:30000
Cons ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
KS ci ratio: 2.275505e-02	ci left: 4.915927e-01	ci right 5.029412e-01	k: 14918	n:30000
RANBP9   30000 perm   6 sec   (5032 perm/sec)   p_kst 4.972667e-01   p_cons 3.400000e-03   p_joint 1.199000e-01

Joint ci ratio: 6.105512e-02	ci left: 9.056542e-02	ci right 9.629376e-02	k: 3736	n:40000
Cons ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
KS ci ratio: 1.977645e-02	ci left: 4.905883e-01	ci right 5.004124e-01	k: 19820	n:40000
RANBP9   40000 perm   8 sec   (4876 perm/sec)   p_kst 4.955000e-01   p_cons 3.250000e-03   p_joint 9.340000e-02

Joint ci ratio: 4.464307e-02	ci left: 1.306094e-01	ci right 1.365932e-01	k: 6679	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 1.765974e-02	ci left: 4.919278e-01	ci right 5.007126e-01	k: 24816	n:50000
RANBP9   50000 perm   11 sec   (4739 perm/sec)   p_kst 4.963200e-01   p_cons 3.100000e-03   p_joint 1.335800e-01

Joint ci ratio: 5.307669e-02	ci left: 8.111722e-02	ci right 8.555651e-02	k: 4999	n:60000
Cons ci ratio: 2.885404e-01	ci left: 2.624630e-03	ci right 3.524501e-03	k: 183	n:60000
KS ci ratio: 1.613254e-02	ci left: 4.919580e-01	ci right 4.999757e-01	k: 29758	n:60000
RANBP9   60000 perm   13 sec   (4633 perm/sec)   p_kst 4.959667e-01   p_cons 3.050000e-03   p_joint 8.331667e-02

Joint ci ratio: 5.114272e-02	ci left: 7.544493e-02	ci right 7.941876e-02	k: 5419	n:70000
Cons ci ratio: 2.700977e-01	ci left: 2.595116e-03	ci right 3.418367e-03	k: 209	n:70000
KS ci ratio: 1.497463e-02	ci left: 4.909608e-01	ci right 4.983825e-01	k: 34627	n:70000
RANBP9   70000 perm   16 sec   (4314 perm/sec)   p_kst 4.946714e-01   p_cons 2.985714e-03   p_joint 7.741429e-02

Joint ci ratio: 5.090835e-02	ci left: 6.724073e-02	ci right 7.076560e-02	k: 5519	n:80000
Cons ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
KS ci ratio: 1.402039e-02	ci left: 4.907420e-01	ci right 4.976834e-01	k: 39537	n:80000
RANBP9   80000 perm   19 sec   (4268 perm/sec)   p_kst 4.942125e-01   p_cons 3.075000e-03   p_joint 6.898750e-02

Joint ci ratio: 4.538517e-02	ci left: 7.480459e-02	ci right 7.828942e-02	k: 6888	n:90000
Cons ci ratio: 2.338988e-01	ci left: 2.747352e-03	ci right 3.485250e-03	k: 279	n:90000
KS ci ratio: 1.323007e-02	ci left: 4.905061e-01	ci right 4.970498e-01	k: 44440	n:90000
RANBP9   90000 perm   21 sec   (4220 perm/sec)   p_kst 4.937778e-01   p_cons 3.100000e-03   p_joint 7.653333e-02

Joint ci ratio: 4.512428e-02	ci left: 6.858442e-02	ci right 7.176056e-02	k: 7016	n:100000
Cons ci ratio: 2.215787e-01	ci left: 2.774376e-03	ci right 3.474935e-03	k: 311	n:100000
KS ci ratio: 1.256468e-02	ci left: 4.901365e-01	ci right 4.963439e-01	k: 49324	n:100000
RANBP9   100000 perm   24 sec   (4164 perm/sec)   p_kst 4.932400e-01   p_cons 3.110000e-03   p_joint 7.016000e-02

Joint ci ratio: 4.188204e-02	ci left: 7.221668e-02	ci right 7.531493e-02	k: 8113	n:110000
Cons ci ratio: 2.122621e-01	ci left: 2.762879e-03	ci right 3.427384e-03	k: 339	n:110000
KS ci ratio: 1.199357e-02	ci left: 4.897140e-01	ci right 4.956319e-01	k: 54194	n:110000
RANBP9   110000 perm   27 sec   (4109 perm/sec)   p_kst 4.926727e-01   p_cons 3.081818e-03   p_joint 7.375455e-02

Joint ci ratio: 3.948504e-02	ci left: 7.439940e-02	ci right 7.740446e-02	k: 9107	n:120000
Cons ci ratio: 2.032006e-01	ci left: 2.777541e-03	ci right 3.413515e-03	k: 370	n:120000
KS ci ratio: 1.147356e-02	ci left: 4.902507e-01	ci right 4.959163e-01	k: 59170	n:120000
RANBP9   120000 perm   31 sec   (3902 perm/sec)   p_kst 4.930833e-01   p_cons 3.083333e-03   p_joint 7.589167e-02

Joint ci ratio: 4.158575e-02	ci left: 6.264495e-02	ci right 6.531300e-02	k: 8316	n:130000
Cons ci ratio: 1.949655e-01	ci left: 2.797774e-03	ci right 3.409338e-03	k: 402	n:130000
KS ci ratio: 1.102240e-02	ci left: 4.904094e-01	ci right 4.958525e-01	k: 64107	n:130000
RANBP9   130000 perm   35 sec   (3734 perm/sec)   p_kst 4.931308e-01   p_cons 3.092308e-03   p_joint 6.396923e-02

Joint ci ratio: 4.269503e-02	ci left: 5.557903e-02	ci right 5.801079e-02	k: 7950	n:140000
Cons ci ratio: 1.889685e-01	ci left: 2.774720e-03	ci right 3.360447e-03	k: 428	n:140000
KS ci ratio: 1.061271e-02	ci left: 4.909205e-01	ci right 4.961654e-01	k: 69096	n:140000
RANBP9   140000 perm   38 sec   (3697 perm/sec)   p_kst 4.935429e-01   p_cons 3.057143e-03   p_joint 5.678571e-02

Joint ci ratio: 4.153219e-02	ci left: 5.489453e-02	ci right 5.722934e-02	k: 8408	n:150000
Cons ci ratio: 1.834929e-01	ci left: 2.754990e-03	ci right 3.317825e-03	k: 454	n:150000
KS ci ratio: 1.024663e-02	ci left: 4.913134e-01	ci right 4.963802e-01	k: 74077	n:150000
RANBP9   150000 perm   41 sec   (3624 perm/sec)   p_kst 4.938467e-01   p_cons 3.026667e-03   p_joint 5.605333e-02

Joint ci ratio: 4.113379e-02	ci left: 5.260660e-02	ci right 5.482211e-02	k: 8593	n:160000
Cons ci ratio: 1.775440e-01	ci left: 2.767801e-03	ci right 3.312954e-03	k: 485	n:160000
KS ci ratio: 9.928144e-03	ci left: 4.910473e-01	ci right 4.959530e-01	k: 78960	n:160000
RANBP9   160000 perm   46 sec   (3477 perm/sec)   p_kst 4.935000e-01   p_cons 3.031250e-03   p_joint 5.370625e-02

Joint ci ratio: 3.785085e-02	ci left: 5.822266e-02	ci right 6.047475e-02	k: 10088	n:170000
Cons ci ratio: 1.745249e-01	ci left: 2.700575e-03	ci right 3.222487e-03	k: 502	n:170000
KS ci ratio: 9.635121e-03	ci left: 4.909441e-01	ci right 4.957032e-01	k: 83865	n:170000
RANBP9   170000 perm   49 sec   (3434 perm/sec)   p_kst 4.933235e-01   p_cons 2.952941e-03   p_joint 5.934118e-02

Joint ci ratio: 3.652966e-02	ci left: 5.902838e-02	ci right 6.123026e-02	k: 10822	n:180000
Cons ci ratio: 1.697017e-01	ci left: 2.704715e-03	ci right 3.211503e-03	k: 531	n:180000
KS ci ratio: 9.367014e-03	ci left: 4.908322e-01	ci right 4.954569e-01	k: 88766	n:180000
RANBP9   180000 perm   53 sec   (3373 perm/sec)   p_kst 4.931444e-01   p_cons 2.950000e-03   p_joint 6.012222e-02

Joint ci ratio: 3.581167e-02	ci left: 5.825776e-02	ci right 6.038729e-02	k: 11270	n:190000
Cons ci ratio: 1.663014e-01	ci left: 2.673279e-03	ci right 3.163135e-03	k: 553	n:190000
KS ci ratio: 9.118380e-03	ci left: 4.908284e-01	ci right 4.953297e-01	k: 93685	n:190000
RANBP9   190000 perm   58 sec   (3296 perm/sec)   p_kst 4.930789e-01   p_cons 2.910526e-03   p_joint 5.931579e-02

Joint ci ratio: 3.444160e-02	ci left: 5.978139e-02	ci right 6.188136e-02	k: 12165	n:200000
Cons ci ratio: 1.615577e-01	ci left: 2.697849e-03	ci right 3.176738e-03	k: 586	n:200000
KS ci ratio: 8.887483e-03	ci left: 4.908865e-01	ci right 4.952737e-01	k: 98616	n:200000
RANBP9   200000 perm   61 sec   (3275 perm/sec)   p_kst 4.930800e-01   p_cons 2.930000e-03   p_joint 6.082500e-02

Joint ci ratio: 3.359658e-02	ci left: 5.985723e-02	ci right 6.190729e-02	k: 12784	n:210000
Cons ci ratio: 1.596708e-01	ci left: 2.633360e-03	ci right 3.094818e-03	k: 600	n:210000
KS ci ratio: 8.679232e-03	ci left: 4.905976e-01	ci right 4.948788e-01	k: 103475	n:210000
RANBP9   210000 perm   65 sec   (3252 perm/sec)   p_kst 4.927381e-01   p_cons 2.857143e-03   p_joint 6.087619e-02

Joint ci ratio: 2.967539e-02	ci left: 7.239485e-02	ci right 7.458004e-02	k: 16166	n:220000
Cons ci ratio: 1.572086e-01	ci left: 2.596597e-03	ci right 3.043934e-03	k: 619	n:220000
KS ci ratio: 8.476015e-03	ci left: 4.908633e-01	ci right 4.950460e-01	k: 108450	n:220000
RANBP9   220000 perm   68 sec   (3229 perm/sec)   p_kst 4.929545e-01   p_cons 2.813636e-03   p_joint 7.348182e-02

Joint ci ratio: 2.903411e-02	ci left: 7.236763e-02	ci right 7.450400e-02	k: 16889	n:230000
Cons ci ratio: 1.544937e-01	ci left: 2.575621e-03	ci right 3.010972e-03	k: 641	n:230000
KS ci ratio: 8.290109e-03	ci left: 4.908852e-01	ci right 4.949759e-01	k: 113374	n:230000
RANBP9   230000 perm   72 sec   (3204 perm/sec)   p_kst 4.929304e-01   p_cons 2.786957e-03   p_joint 7.343043e-02

Joint ci ratio: 3.130875e-02	ci left: 6.035179e-02	ci right 6.227549e-02	k: 14714	n:240000
Cons ci ratio: 1.524914e-01	ci left: 2.536413e-03	ci right 2.959072e-03	k: 658	n:240000
KS ci ratio: 8.113148e-03	ci left: 4.910770e-01	ci right 4.950815e-01	k: 118339	n:240000
RANBP9   240000 perm   75 sec   (3180 perm/sec)   p_kst 4.930792e-01   p_cons 2.741667e-03   p_joint 6.130833e-02

Joint ci ratio: 2.756572e-02	ci left: 7.380352e-02	ci right 7.587035e-02	k: 18708	n:250000
Cons ci ratio: 1.479542e-01	ci left: 2.592798e-03	ci right 3.010861e-03	k: 699	n:250000
KS ci ratio: 7.949791e-03	ci left: 4.910823e-01	ci right 4.950058e-01	k: 123261	n:250000
RANBP9   250000 perm   79 sec   (3155 perm/sec)   p_kst 4.930440e-01   p_cons 2.796000e-03   p_joint 7.483200e-02

Joint ci ratio: 2.651638e-02	ci left: 7.650943e-02	ci right 7.856923e-02	k: 20159	n:260000
Cons ci ratio: 1.441900e-01	ci left: 2.630186e-03	ci right 3.042559e-03	k: 736	n:260000
KS ci ratio: 7.793281e-03	ci left: 4.912572e-01	ci right 4.951045e-01	k: 128227	n:260000
RANBP9   260000 perm   83 sec   (3128 perm/sec)   p_kst 4.931808e-01   p_cons 2.830769e-03   p_joint 7.753462e-02

Joint ci ratio: 2.632480e-02	ci left: 7.489270e-02	ci right 7.689419e-02	k: 20490	n:270000
Cons ci ratio: 1.410652e-01	ci left: 2.650634e-03	ci right 3.056450e-03	k: 769	n:270000
KS ci ratio: 7.650990e-03	ci left: 4.910717e-01	ci right 4.948470e-01	k: 133099	n:270000
RANBP9   270000 perm   87 sec   (3092 perm/sec)   p_kst 4.929593e-01   p_cons 2.848148e-03   p_joint 7.588889e-02

Joint ci ratio: 2.816463e-02	ci left: 6.379511e-02	ci right 6.562106e-02	k: 18117	n:280000
Cons ci ratio: 1.382214e-01	ci left: 2.666263e-03	ci right 3.065565e-03	k: 801	n:280000
KS ci ratio: 7.512351e-03	ci left: 4.911572e-01	ci right 4.948644e-01	k: 138043	n:280000
RANBP9   280000 perm   92 sec   (3048 perm/sec)   p_kst 4.930107e-01   p_cons 2.860714e-03   p_joint 6.470357e-02

Joint ci ratio: 2.849803e-02	ci left: 6.037480e-02	ci right 6.212363e-02	k: 17761	n:290000
Cons ci ratio: 1.359523e-01	ci left: 2.664233e-03	ci right 3.056151e-03	k: 828	n:290000
KS ci ratio: 7.382666e-03	ci left: 4.911236e-01	ci right 4.947662e-01	k: 142954	n:290000
RANBP9   290000 perm   96 sec   (3018 perm/sec)   p_kst 4.929448e-01   p_cons 2.855172e-03   p_joint 6.124483e-02

Joint ci ratio: 2.764705e-02	ci left: 6.193443e-02	ci right 6.367403e-02	k: 18840	n:300000
Cons ci ratio: 1.337130e-01	ci left: 2.665611e-03	ci right 3.050759e-03	k: 856	n:300000
KS ci ratio: 7.261361e-03	ci left: 4.909627e-01	ci right 4.945441e-01	k: 147826	n:300000
RANBP9   300000 perm   100 sec   (2988 perm/sec)   p_kst 4.927533e-01   p_cons 2.853333e-03   p_joint 6.280000e-02

Joint ci ratio: 2.478257e-02	ci left: 7.375443e-02	ci right 7.560837e-02	k: 23150	n:310000
Cons ci ratio: 1.318051e-01	ci left: 2.657589e-03	ci right 3.035671e-03	k: 881	n:310000
KS ci ratio: 7.145936e-03	ci left: 4.908063e-01	ci right 4.943293e-01	k: 152696	n:310000
RANBP9   310000 perm   105 sec   (2959 perm/sec)   p_kst 4.925677e-01   p_cons 2.841935e-03   p_joint 7.467742e-02

Joint ci ratio: 2.382891e-02	ci left: 7.704514e-02	ci right 7.890626e-02	k: 24951	n:320000
Cons ci ratio: 1.299049e-01	ci left: 2.653129e-03	ci right 3.024715e-03	k: 907	n:320000
KS ci ratio: 7.027668e-03	ci left: 4.912413e-01	ci right 4.947088e-01	k: 157752	n:320000
RANBP9   320000 perm   109 sec   (2930 perm/sec)   p_kst 4.929750e-01   p_cons 2.834375e-03   p_joint 7.797187e-02

Joint ci ratio: 2.347882e-02	ci left: 7.697571e-02	ci right 7.880747e-02	k: 25703	n:330000
Cons ci ratio: 1.282222e-01	ci left: 2.643110e-03	ci right 3.008132e-03	k: 931	n:330000
KS ci ratio: 6.922919e-03	ci left: 4.910837e-01	ci right 4.944982e-01	k: 162621	n:330000
RANBP9   330000 perm   114 sec   (2900 perm/sec)   p_kst 4.927909e-01   p_cons 2.821212e-03   p_joint 7.788788e-02

Joint ci ratio: 2.334818e-02	ci left: 7.566430e-02	ci right 7.745469e-02	k: 26029	n:340000
Cons ci ratio: 1.263385e-01	ci left: 2.645102e-03	ci right 3.004631e-03	k: 959	n:340000
KS ci ratio: 6.822075e-03	ci left: 4.909828e-01	ci right 4.943467e-01	k: 167506	n:340000
RANBP9   340000 perm   119 sec   (2864 perm/sec)   p_kst 4.926647e-01   p_cons 2.820588e-03   p_joint 7.655588e-02

Joint ci ratio: 2.107743e-02	ci left: 8.898846e-02	ci right 9.088690e-02	k: 31477	n:350000
Cons ci ratio: 1.246621e-01	ci left: 2.641481e-03	ci right 2.995402e-03	k: 985	n:350000
KS ci ratio: 6.725935e-03	ci left: 4.908566e-01	ci right 4.941721e-01	k: 172380	n:350000
RANBP9   350000 perm   123 sec   (2839 perm/sec)   p_kst 4.925143e-01   p_cons 2.814286e-03   p_joint 8.993429e-02

Joint ci ratio: 2.102084e-02	ci left: 8.716222e-02	ci right 8.901664e-02	k: 31711	n:360000
Cons ci ratio: 1.233566e-01	ci left: 2.624629e-03	ci right 2.972340e-03	k: 1006	n:360000
KS ci ratio: 6.631020e-03	ci left: 4.909433e-01	ci right 4.942123e-01	k: 177328	n:360000
RANBP9   360000 perm   128 sec   (2815 perm/sec)   p_kst 4.925778e-01   p_cons 2.794444e-03   p_joint 8.808611e-02

Joint ci ratio: 2.111533e-02	ci left: 8.431041e-02	ci right 8.611231e-02	k: 31527	n:370000
Cons ci ratio: 1.215589e-01	ci left: 2.632291e-03	ci right 2.975569e-03	k: 1036	n:370000
KS ci ratio: 6.539588e-03	ci left: 4.910581e-01	ci right 4.942826e-01	k: 182288	n:370000
RANBP9   370000 perm   133 sec   (2786 perm/sec)   p_kst 4.926703e-01   p_cons 2.800000e-03   p_joint 8.520811e-02

Joint ci ratio: 1.965088e-02	ci left: 9.385990e-02	ci right 9.572523e-02	k: 36020	n:380000
Cons ci ratio: 1.197250e-01	ci left: 2.644690e-03	ci right 2.984014e-03	k: 1068	n:380000
KS ci ratio: 6.450512e-03	ci left: 4.912697e-01	ci right 4.944515e-01	k: 187287	n:380000
RANBP9   380000 perm   138 sec   (2761 perm/sec)   p_kst 4.928605e-01   p_cons 2.810526e-03   p_joint 9.478947e-02

Joint ci ratio: 1.988719e-02	ci left: 8.969580e-02	ci right 9.150004e-02	k: 35332	n:390000
Cons ci ratio: 1.182954e-01	ci left: 2.641560e-03	ci right 2.976152e-03	k: 1094	n:390000
KS ci ratio: 6.366448e-03	ci left: 4.913553e-01	ci right 4.944960e-01	k: 192241	n:390000
RANBP9   390000 perm   143 sec   (2737 perm/sec)   p_kst 4.929256e-01   p_cons 2.805128e-03   p_joint 9.059487e-02

Joint ci ratio: 1.998430e-02	ci left: 8.687245e-02	ci right 8.862852e-02	k: 35099	n:400000
Cons ci ratio: 1.171782e-01	ci left: 2.626473e-03	ci right 2.955795e-03	k: 1115	n:400000
KS ci ratio: 6.288133e-03	ci left: 4.912345e-01	ci right 4.943356e-01	k: 197114	n:400000
RANBP9   400000 perm   147 sec   (2714 perm/sec)   p_kst 4.927850e-01   p_cons 2.787500e-03   p_joint 8.774750e-02

Joint ci ratio: 1.928352e-02	ci left: 9.067742e-02	ci right 9.244543e-02	k: 37539	n:410000
Cons ci ratio: 1.159387e-01	ci left: 2.619242e-03	ci right 2.943946e-03	k: 1139	n:410000
KS ci ratio: 6.210668e-03	ci left: 4.912783e-01	ci right 4.943413e-01	k: 202052	n:410000
RANBP9   410000 perm   152 sec   (2690 perm/sec)   p_kst 4.928098e-01   p_cons 2.778049e-03   p_joint 9.155854e-02

Joint ci ratio: 1.874891e-02	ci left: 9.338458e-02	ci right 9.515435e-02	k: 39592	n:420000
Cons ci ratio: 1.144424e-01	ci left: 2.626250e-03	ci right 2.947337e-03	k: 1169	n:420000
KS ci ratio: 6.134507e-03	ci left: 4.914416e-01	ci right 4.944680e-01	k: 207041	n:420000
RANBP9   420000 perm   157 sec   (2667 perm/sec)   p_kst 4.929548e-01   p_cons 2.783333e-03   p_joint 9.426667e-02

Joint ci ratio: 1.882953e-02	ci left: 9.070004e-02	ci right 9.242640e-02	k: 39371	n:430000
Cons ci ratio: 1.130498e-01	ci left: 2.630698e-03	ci right 2.948153e-03	k: 1198	n:430000
KS ci ratio: 6.061108e-03	ci left: 4.915953e-01	ci right 4.945862e-01	k: 212029	n:430000
RANBP9   430000 perm   163 sec   (2643 perm/sec)   p_kst 4.930907e-01   p_cons 2.786047e-03   p_joint 9.156047e-02

Joint ci ratio: 1.818560e-02	ci left: 9.464443e-02	ci right 9.638363e-02	k: 42025	n:440000
Cons ci ratio: 1.118439e-01	ci left: 2.628338e-03	ci right 2.941902e-03	k: 1224	n:440000
KS ci ratio: 5.989791e-03	ci left: 4.917830e-01	ci right 4.947398e-01	k: 217035	n:440000
RANBP9   440000 perm   168 sec   (2618 perm/sec)   p_kst 4.932614e-01   p_cons 2.781818e-03   p_joint 9.551136e-02

Joint ci ratio: 1.810447e-02	ci left: 9.349633e-02	ci right 9.520668e-02	k: 42457	n:450000
Cons ci ratio: 1.104987e-01	ci left: 2.634744e-03	ci right 2.945046e-03	k: 1254	n:450000
KS ci ratio: 5.923039e-03	ci left: 4.917849e-01	ci right 4.947086e-01	k: 221961	n:450000
RANBP9   450000 perm   174 sec   (2591 perm/sec)   p_kst 4.932467e-01   p_cons 2.786667e-03   p_joint 9.434889e-02

Joint ci ratio: 1.791972e-02	ci left: 9.338115e-02	ci right 9.507179e-02	k: 43343	n:460000
Cons ci ratio: 1.092010e-01	ci left: 2.640893e-03	ci right 2.948031e-03	k: 1284	n:460000
KS ci ratio: 5.859718e-03	ci left: 4.916803e-01	ci right 4.945720e-01	k: 226838	n:460000
RANBP9   460000 perm   179 sec   (2567 perm/sec)   p_kst 4.931261e-01   p_cons 2.791304e-03   p_joint 9.422391e-02

Joint ci ratio: 1.758772e-02	ci left: 9.475020e-02	ci right 9.643352e-02	k: 44927	n:470000
Cons ci ratio: 1.081957e-01	ci left: 2.634379e-03	ci right 2.937759e-03	k: 1308	n:470000
KS ci ratio: 5.797447e-03	ci left: 4.916612e-01	ci right 4.945219e-01	k: 231753	n:470000
RANBP9   470000 perm   185 sec   (2544 perm/sec)   p_kst 4.930915e-01   p_cons 2.782979e-03   p_joint 9.558936e-02

Joint ci ratio: 1.742306e-02	ci left: 9.456620e-02	ci right 9.623036e-02	k: 45790	n:480000
Cons ci ratio: 1.068167e-01	ci left: 2.648426e-03	ci right 2.949292e-03	k: 1342	n:480000
KS ci ratio: 5.737670e-03	ci left: 4.915951e-01	ci right 4.944258e-01	k: 236645	n:480000
RANBP9   480000 perm   191 sec   (2519 perm/sec)   p_kst 4.930104e-01   p_cons 2.795833e-03   p_joint 9.539583e-02

Joint ci ratio: 1.740723e-02	ci left: 9.297083e-02	ci right 9.460541e-02	k: 45955	n:490000
Cons ci ratio: 1.058753e-01	ci left: 2.642053e-03	ci right 2.939385e-03	k: 1366	n:490000
KS ci ratio: 5.678313e-03	ci left: 4.916543e-01	ci right 4.944560e-01	k: 241597	n:490000
RANBP9   490000 perm   197 sec   (2490 perm/sec)   p_kst 4.930551e-01   p_cons 2.787755e-03   p_joint 9.378571e-02

Joint ci ratio: 1.697540e-02	ci left: 9.555339e-02	ci right 9.719130e-02	k: 48185	n:500000
Cons ci ratio: 1.048451e-01	ci left: 2.641789e-03	ci right 2.936020e-03	k: 1393	n:500000
KS ci ratio: 5.620244e-03	ci left: 4.917573e-01	ci right 4.945308e-01	k: 246572	n:500000
RANBP9   500000 perm   203 sec   (2465 perm/sec)   p_kst 4.931440e-01   p_cons 2.786000e-03   p_joint 9.637000e-02

Joint ci ratio: 1.680243e-02	ci left: 9.562061e-02	ci right 9.724281e-02	k: 49179	n:510000
Cons ci ratio: 1.041387e-01	ci left: 2.626269e-03	ci right 2.916680e-03	k: 1412	n:510000
KS ci ratio: 5.563549e-03	ci left: 4.918897e-01	ci right 4.946359e-01	k: 251564	n:510000
RANBP9   510000 perm   209 sec   (2444 perm/sec)   p_kst 4.932627e-01   p_cons 2.768627e-03   p_joint 9.642941e-02

Joint ci ratio: 1.683933e-02	ci left: 9.358170e-02	ci right 9.517282e-02	k: 49075	n:520000
Cons ci ratio: 1.030145e-01	ci left: 2.633835e-03	ci right 2.921749e-03	k: 1443	n:520000
KS ci ratio: 5.511758e-03	ci left: 4.917248e-01	ci right 4.944445e-01	k: 256404	n:520000
RANBP9   520000 perm   215 sec   (2423 perm/sec)   p_kst 4.930846e-01   p_cons 2.775000e-03   p_joint 9.437500e-02

Joint ci ratio: 1.670310e-02	ci left: 9.335095e-02	ci right 9.492519e-02	k: 49892	n:530000
Cons ci ratio: 1.023442e-01	ci left: 2.619068e-03	ci right 2.903392e-03	k: 1462	n:530000
KS ci ratio: 5.459530e-03	ci left: 4.917361e-01	ci right 4.944300e-01	k: 261334	n:530000
RANBP9   530000 perm   221 sec   (2403 perm/sec)   p_kst 4.930830e-01   p_cons 2.758491e-03   p_joint 9.413585e-02

Joint ci ratio: 1.696301e-02	ci left: 8.923060e-02	ci right 9.075899e-02	k: 48596	n:540000
Cons ci ratio: 1.017557e-01	ci left: 2.601243e-03	ci right 2.881912e-03	k: 1479	n:540000
KS ci ratio: 5.409561e-03	ci left: 4.916731e-01	ci right 4.943418e-01	k: 266224	n:540000
RANBP9   540000 perm   227 sec   (2382 perm/sec)   p_kst 4.930074e-01   p_cons 2.738889e-03   p_joint 8.999259e-02

Joint ci ratio: 1.661315e-02	ci left: 9.115951e-02	ci right 9.268843e-02	k: 50557	n:550000
Cons ci ratio: 1.008066e-01	ci left: 2.603567e-03	ci right 2.881712e-03	k: 1507	n:550000
KS ci ratio: 5.359477e-03	ci left: 4.917488e-01	ci right 4.943931e-01	k: 271189	n:550000
RANBP9   550000 perm   233 sec   (2363 perm/sec)   p_kst 4.930709e-01   p_cons 2.740000e-03   p_joint 9.192182e-02

Joint ci ratio: 1.630716e-02	ci left: 9.277251e-02	ci right 9.429956e-02	k: 52379	n:560000
Cons ci ratio: 9.978581e-02	ci left: 2.611044e-03	ci right 2.886997e-03	k: 1538	n:560000
KS ci ratio: 5.310342e-03	ci left: 4.918611e-01	ci right 4.944818e-01	k: 276176	n:560000
RANBP9   560000 perm   239 sec   (2342 perm/sec)   p_kst 4.931714e-01   p_cons 2.746429e-03   p_joint 9.353393e-02

Outputting figure to mutsig2_images.part000000000143/RANBP9.3_2246_560000_0.49317_0.0027464_0.093534.png
                gene_name: RANBP9
               theta_stop: 0.100 
                    nperm: 560000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.0027 
      ci_cons_bounds_left: 0.0026 
     ci_cons_bounds_right: 0.0029 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.094 

Current progress: 69 percent done.
RANGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.974757e-02	ci left: 7.895889e-01	ci right 8.054374e-01	k: 7976	n:10000
KS ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
RANGAP1   10000 perm   2 sec   (6251 perm/sec)   p_kst 7.369000e-01   p_cons 7.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANGAP1.3_1824_10000_0.7369_0.7976_1.png
                gene_name: RANGAP1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
RAP2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
RAP2C   10000 perm   1 sec   (6908 perm/sec)   p_kst 1.217000e-01   p_cons 9.493000e-01   p_joint 3.339000e-01

Joint ci ratio: 5.605020e-02	ci left: 1.909630e-01	ci right 2.020253e-01	k: 3929	n:20000
Cons ci ratio: 6.321372e-03	ci left: 9.475056e-01	ci right 9.535626e-01	k: 19012	n:20000
KS ci ratio: 7.830386e-02	ci left: 1.069730e-01	ci right 1.157403e-01	k: 2226	n:20000
RAP2C   20000 perm   3 sec   (6052 perm/sec)   p_kst 1.113000e-01   p_cons 9.506000e-01   p_joint 1.964500e-01

Outputting figure to mutsig2_images.part000000000143/RAP2C.3_560_20000_0.1113_0.9506_0.19645.png
                gene_name: RAP2C
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 72 percent done.
RARA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
Cons ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
RARA   10000 perm   2 sec   (6163 perm/sec)   p_kst 9.900000e-03   p_cons 6.330000e-02   p_joint 1.870000e-02

Joint ci ratio: 2.822767e-01	ci left: 8.202300e-03	ci right 1.094312e-02	k: 190	n:20000
Cons ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
KS ci ratio: 2.900427e-01	ci left: 7.737913e-03	ci right 1.040775e-02	k: 180	n:20000
RARA   20000 perm   4 sec   (5511 perm/sec)   p_kst 9.000000e-03   p_cons 7.950000e-02   p_joint 9.500000e-03

Joint ci ratio: 2.211240e-01	ci left: 9.219947e-03	ci right 1.154301e-02	k: 310	n:30000
Cons ci ratio: 7.599359e-02	ci left: 7.836242e-02	ci right 8.458558e-02	k: 2443	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
RARA   30000 perm   6 sec   (5269 perm/sec)   p_kst 9.733333e-03   p_cons 8.143333e-02   p_joint 1.033333e-02

Joint ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
Cons ci ratio: 6.615207e-02	ci left: 7.802417e-02	ci right 8.338689e-02	k: 3227	n:40000
KS ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
RARA   40000 perm   8 sec   (5111 perm/sec)   p_kst 9.950000e-03   p_cons 8.067500e-02   p_joint 6.400000e-03

Joint ci ratio: 2.157326e-01	ci left: 5.852246e-03	ci right 7.285946e-03	k: 327	n:50000
Cons ci ratio: 5.883588e-02	ci left: 7.913590e-02	ci right 8.395282e-02	k: 4076	n:50000
KS ci ratio: 1.739011e-01	ci left: 9.184683e-03	ci right 1.095289e-02	k: 502	n:50000
RARA   50000 perm   10 sec   (4979 perm/sec)   p_kst 1.004000e-02   p_cons 8.152000e-02   p_joint 6.540000e-03

Joint ci ratio: 2.009853e-01	ci left: 5.666711e-03	ci right 6.948414e-03	k: 377	n:60000
Cons ci ratio: 5.365831e-02	ci left: 7.948734e-02	ci right 8.388656e-02	k: 4900	n:60000
KS ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
RARA   60000 perm   12 sec   (4866 perm/sec)   p_kst 9.583333e-03   p_cons 8.166667e-02   p_joint 6.283333e-03

Joint ci ratio: 1.862891e-01	ci left: 5.700015e-03	ci right 6.884327e-03	k: 439	n:70000
Cons ci ratio: 4.967247e-02	ci left: 7.966701e-02	ci right 8.373918e-02	k: 5718	n:70000
KS ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
RARA   70000 perm   15 sec   (4760 perm/sec)   p_kst 9.628571e-03   p_cons 8.168571e-02   p_joint 6.271429e-03

Joint ci ratio: 1.417983e-01	ci left: 8.791150e-03	ci right 1.014478e-02	k: 756	n:80000
Cons ci ratio: 5.164065e-02	ci left: 6.544984e-02	ci right 6.893163e-02	k: 5374	n:80000
KS ci ratio: 1.402174e-01	ci left: 8.996219e-03	ci right 1.036469e-02	k: 773	n:80000
RARA   80000 perm   17 sec   (4661 perm/sec)   p_kst 9.662500e-03   p_cons 6.717500e-02   p_joint 9.450000e-03

Joint ci ratio: 1.463252e-01	ci left: 7.331963e-03	ci right 8.500089e-03	k: 711	n:90000
Cons ci ratio: 4.857490e-02	ci left: 6.583635e-02	ci right 6.912492e-02	k: 6072	n:90000
KS ci ratio: 1.324096e-01	ci left: 9.005485e-03	ci right 1.029308e-02	k: 867	n:90000
RARA   90000 perm   20 sec   (4571 perm/sec)   p_kst 9.633333e-03   p_cons 6.746667e-02   p_joint 7.900000e-03

Joint ci ratio: 1.796234e-01	ci left: 4.314163e-03	ci right 5.174950e-03	k: 473	n:100000
Cons ci ratio: 4.620636e-02	ci left: 6.558655e-02	ci right 6.869861e-02	k: 6713	n:100000
KS ci ratio: 1.249911e-01	ci left: 9.130864e-03	ci right 1.035782e-02	k: 973	n:100000
RARA   100000 perm   22 sec   (4489 perm/sec)   p_kst 9.730000e-03   p_cons 6.713000e-02   p_joint 4.730000e-03

Joint ci ratio: 1.361299e-01	ci left: 6.972266e-03	ci right 7.999412e-03	k: 822	n:110000
Cons ci ratio: 4.407973e-02	ci left: 6.559236e-02	ci right 6.855779e-02	k: 7377	n:110000
KS ci ratio: 1.193658e-01	ci left: 9.129220e-03	ci right 1.029685e-02	k: 1067	n:110000
RARA   110000 perm   25 sec   (4411 perm/sec)   p_kst 9.700000e-03   p_cons 6.706364e-02   p_joint 7.472727e-03

Joint ci ratio: 9.928007e-02	ci left: 1.218787e-02	ci right 1.346916e-02	k: 1538	n:120000
Cons ci ratio: 4.217711e-02	ci left: 6.573198e-02	ci right 6.857232e-02	k: 8057	n:120000
KS ci ratio: 1.136500e-01	ci left: 9.258448e-03	ci right 1.038210e-02	k: 1177	n:120000
RARA   120000 perm   28 sec   (4331 perm/sec)   p_kst 9.808333e-03   p_cons 6.714167e-02   p_joint 1.281667e-02

Joint ci ratio: 1.025830e-01	ci left: 1.053755e-02	ci right 1.168441e-02	k: 1443	n:130000
Cons ci ratio: 4.049885e-02	ci left: 6.586007e-02	ci right 6.859005e-02	k: 8738	n:130000
KS ci ratio: 1.097209e-01	ci left: 9.189301e-03	ci right 1.026351e-02	k: 1263	n:130000
RARA   130000 perm   31 sec   (4248 perm/sec)   p_kst 9.715385e-03   p_cons 6.721538e-02   p_joint 1.110000e-02

Joint ci ratio: 9.271653e-02	ci left: 1.202227e-02	ci right 1.319805e-02	k: 1764	n:140000
Cons ci ratio: 3.888463e-02	ci left: 6.636108e-02	ci right 6.899972e-02	k: 9474	n:140000
KS ci ratio: 1.064519e-01	ci left: 9.081927e-03	ci right 1.010997e-02	k: 1342	n:140000
RARA   140000 perm   34 sec   (4168 perm/sec)   p_kst 9.585714e-03   p_cons 6.767143e-02   p_joint 1.260000e-02

Joint ci ratio: 9.921382e-02	ci left: 9.788703e-03	ci right 1.081702e-02	k: 1544	n:150000
Cons ci ratio: 3.742356e-02	ci left: 6.688304e-02	ci right 6.944035e-02	k: 10223	n:150000
KS ci ratio: 1.032024e-01	ci left: 9.034755e-03	ci right 1.002434e-02	k: 1428	n:150000
RARA   150000 perm   37 sec   (4093 perm/sec)   p_kst 9.520000e-03   p_cons 6.815333e-02   p_joint 1.029333e-02

Joint ci ratio: 9.553760e-02	ci left: 9.914775e-03	ci right 1.091559e-02	k: 1665	n:160000
Cons ci ratio: 3.620778e-02	ci left: 6.701907e-02	ci right 6.949660e-02	k: 10920	n:160000
KS ci ratio: 9.898765e-02	ci left: 9.225536e-03	ci right 1.019235e-02	k: 1552	n:160000
RARA   160000 perm   40 sec   (4020 perm/sec)   p_kst 9.700000e-03   p_cons 6.825000e-02   p_joint 1.040625e-02

Outputting figure to mutsig2_images.part000000000143/RARA.3_1588_160000_0.0097_0.06825_0.010406.png
                gene_name: RARA
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0099 
    ci_joint_bounds_right: 0.011 

Current progress: 74 percent done.
RARB
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
KS ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
RARB   10000 perm   1 sec   (6754 perm/sec)   p_kst 9.154000e-01   p_cons 8.190000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
KS ci ratio: 8.547293e-03	ci left: 9.092128e-01	ci right 9.170666e-01	k: 18264	n:20000
RARB   20000 perm   3 sec   (5939 perm/sec)   p_kst 9.132000e-01   p_cons 8.235000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RARB.2_1379_20000_0.9132_0.08235_1.png
                gene_name: RARB
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
RASA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
Cons ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
KS ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
RASA1   10000 perm   2 sec   (5594 perm/sec)   p_kst 3.812000e-01   p_cons 4.650000e-02   p_joint 2.402000e-01

Joint ci ratio: 6.373567e-02	ci left: 1.539569e-01	ci right 1.641424e-01	k: 3180	n:20000
Cons ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
KS ci ratio: 3.539103e-02	ci left: 3.734153e-01	ci right 3.869195e-01	k: 7603	n:20000
RASA1   20000 perm   4 sec   (4991 perm/sec)   p_kst 3.801500e-01   p_cons 4.650000e-02   p_joint 1.590000e-01

Joint ci ratio: 5.918584e-02	ci left: 1.237782e-01	ci right 1.313607e-01	k: 3826	n:30000
Cons ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
KS ci ratio: 2.878046e-02	ci left: 3.765633e-01	ci right 3.875928e-01	k: 11462	n:30000
RASA1   30000 perm   6 sec   (4747 perm/sec)   p_kst 3.820667e-01   p_cons 4.686667e-02   p_joint 1.275333e-01

Joint ci ratio: 4.102607e-02	ci left: 1.819988e-01	ci right 1.896468e-01	k: 7432	n:40000
Cons ci ratio: 8.733469e-02	ci left: 4.585206e-02	ci right 5.006387e-02	k: 1917	n:40000
KS ci ratio: 2.482066e-02	ci left: 3.792797e-01	ci right 3.888371e-01	k: 15362	n:40000
RASA1   40000 perm   9 sec   (4598 perm/sec)   p_kst 3.840500e-01   p_cons 4.792500e-02   p_joint 1.858000e-01

Outputting figure to mutsig2_images.part000000000143/RASA1.3_3256_40000_0.38405_0.047925_0.1858.png
                gene_name: RASA1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 78 percent done.
RASA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KS ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
RASA2   10000 perm   2 sec   (5557 perm/sec)   p_kst 8.217000e-01   p_cons 7.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RASA2.3_2646_10000_0.8217_0.7213_1.png
                gene_name: RASA2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RASEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
RASEF   10000 perm   2 sec   (5876 perm/sec)   p_kst 8.302000e-01   p_cons 7.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RASEF.3_2291_10000_0.8302_0.7986_1.png
                gene_name: RASEF
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
RASGEF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
Cons ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
KS ci ratio: 3.026420e-02	ci left: 6.169333e-01	ci right 6.359930e-01	k: 6265	n:10000
RASGEF1C   10000 perm   2 sec   (6274 perm/sec)   p_kst 6.265000e-01   p_cons 2.910000e-02   p_joint 1.130000e-01

Joint ci ratio: 8.003307e-02	ci left: 1.027974e-01	ci right 1.114172e-01	k: 2141	n:20000
Cons ci ratio: 1.637627e-01	ci left: 2.556543e-02	ci right 3.017320e-02	k: 556	n:20000
KS ci ratio: 2.185152e-02	ci left: 6.099203e-01	ci right 6.234458e-01	k: 12334	n:20000
RASGEF1C   20000 perm   4 sec   (5574 perm/sec)   p_kst 6.167000e-01   p_cons 2.780000e-02   p_joint 1.070500e-01

Joint ci ratio: 5.096158e-02	ci left: 1.605188e-01	ci right 1.689462e-01	k: 4941	n:30000
Cons ci ratio: 1.337539e-01	ci left: 2.596885e-02	ci right 2.972334e-02	k: 834	n:30000
KS ci ratio: 1.789612e-02	ci left: 6.097335e-01	ci right 6.207775e-01	k: 18458	n:30000
RASGEF1C   30000 perm   6 sec   (5312 perm/sec)   p_kst 6.152667e-01   p_cons 2.780000e-02   p_joint 1.647000e-01

Joint ci ratio: 4.845209e-02	ci left: 1.372072e-01	ci right 1.440451e-01	k: 5624	n:40000
Cons ci ratio: 1.154795e-01	ci left: 2.638084e-02	ci right 2.963817e-02	k: 1119	n:40000
KS ci ratio: 1.552947e-02	ci left: 6.095342e-01	ci right 6.190992e-01	k: 24573	n:40000
RASGEF1C   40000 perm   8 sec   (5137 perm/sec)   p_kst 6.143250e-01   p_cons 2.797500e-02   p_joint 1.406000e-01

Joint ci ratio: 4.793281e-02	ci left: 1.151449e-01	ci right 1.208195e-01	k: 5898	n:50000
Cons ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
KS ci ratio: 1.388082e-02	ci left: 6.103576e-01	ci right 6.189091e-01	k: 30732	n:50000
RASGEF1C   50000 perm   10 sec   (4990 perm/sec)   p_kst 6.146400e-01   p_cons 2.800000e-02   p_joint 1.179600e-01

Joint ci ratio: 4.080042e-02	ci left: 1.306063e-01	ci right 1.360626e-01	k: 7999	n:60000
Cons ci ratio: 9.487159e-02	ci left: 2.635256e-02	ci right 2.899339e-02	k: 1659	n:60000
KS ci ratio: 1.269928e-02	ci left: 6.096901e-01	ci right 6.174989e-01	k: 36816	n:60000
RASGEF1C   60000 perm   12 sec   (4871 perm/sec)   p_kst 6.136000e-01   p_cons 2.765000e-02   p_joint 1.333167e-01

Outputting figure to mutsig2_images.part000000000143/RASGEF1C.3_1453_60000_0.6136_0.02765_0.13332.png
                gene_name: RASGEF1C
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 83 percent done.
RAD51AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
Cons ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
KS ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
RAD51AP1   10000 perm   1 sec   (6722 perm/sec)   p_kst 5.376000e-01   p_cons 3.038000e-01   p_joint 9.588000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51AP1.2_1099_10000_0.5376_0.3038_0.9588.png
                gene_name: RAD51AP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 84 percent done.
RAD51L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
RAD51L3   10000 perm   1 sec   (6827 perm/sec)   p_kst 6.386000e-01   p_cons 4.998000e-01   p_joint 9.805000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51L3.2_1210_10000_0.6386_0.4998_0.9805.png
                gene_name: RAD51L3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 86 percent done.
RAD9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
Cons ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
KS ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
RAD9A   10000 perm   2 sec   (6514 perm/sec)   p_kst 3.633000e-01   p_cons 3.063000e-01   p_joint 2.323000e-01

Outputting figure to mutsig2_images.part000000000143/RAD9A.2_1220_10000_0.3633_0.3063_0.2323.png
                gene_name: RAD9A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 88 percent done.
RAET1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
Cons ci ratio: 4.167877e-02	ci left: 4.594788e-01	ci right 4.791391e-01	k: 4693	n:10000
KS ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
RAET1E   10000 perm   1 sec   (6927 perm/sec)   p_kst 4.084000e-01   p_cons 4.693000e-01   p_joint 9.043000e-01

Outputting figure to mutsig2_images.part000000000143/RAET1E.2_808_10000_0.4084_0.4693_0.9043.png
                gene_name: RAET1E
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 90 percent done.
RAG1AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
RAG1AP1   10000 perm   1 sec   (6919 perm/sec)   p_kst 9.508000e-01   p_cons 3.200000e-02   p_joint 5.890000e-02

Joint ci ratio: 1.075810e-01	ci left: 5.889161e-02	ci right 6.563634e-02	k: 1244	n:20000
Cons ci ratio: 1.517155e-01	ci left: 2.984481e-02	ci right 3.479239e-02	k: 645	n:20000
KS ci ratio: 6.328093e-03	ci left: 9.474027e-01	ci right 9.534655e-01	k: 19010	n:20000
RAG1AP1   20000 perm   3 sec   (6070 perm/sec)   p_kst 9.505000e-01   p_cons 3.225000e-02   p_joint 6.220000e-02

Joint ci ratio: 8.274648e-02	ci left: 6.671286e-02	ci right 7.250416e-02	k: 2087	n:30000
Cons ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
KS ci ratio: 5.133167e-03	ci left: 9.485989e-01	ci right 9.535133e-01	k: 28533	n:30000
RAG1AP1   30000 perm   5 sec   (5748 perm/sec)   p_kst 9.511000e-01   p_cons 3.160000e-02   p_joint 6.956667e-02

Joint ci ratio: 7.188307e-02	ci left: 6.670712e-02	ci right 7.170564e-02	k: 2767	n:40000
Cons ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
KS ci ratio: 4.403196e-03	ci left: 9.498341e-01	ci right 9.540500e-01	k: 38079	n:40000
RAG1AP1   40000 perm   7 sec   (5538 perm/sec)   p_kst 9.519750e-01   p_cons 3.150000e-02   p_joint 6.917500e-02

Joint ci ratio: 6.779174e-02	ci left: 6.055118e-02	ci right 6.481977e-02	k: 3133	n:50000
Cons ci ratio: 9.669967e-02	ci left: 3.027922e-02	ci right 3.337545e-02	k: 1590	n:50000
KS ci ratio: 3.966292e-03	ci left: 9.493974e-01	ci right 9.531900e-01	k: 47566	n:50000
RAG1AP1   50000 perm   9 sec   (5394 perm/sec)   p_kst 9.513200e-01   p_cons 3.180000e-02   p_joint 6.266000e-02

Outputting figure to mutsig2_images.part000000000143/RAG1AP1.2_690_50000_0.95132_0.0318_0.06266.png
                gene_name: RAG1AP1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 91 percent done.
RALA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
Cons ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
KS ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
RALA   10000 perm   1 sec   (7076 perm/sec)   p_kst 3.931000e-01   p_cons 6.014000e-01   p_joint 9.517000e-01

Outputting figure to mutsig2_images.part000000000143/RALA.2_637_10000_0.3931_0.6014_0.9517.png
                gene_name: RALA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 93 percent done.
RAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
RAMP3   10000 perm   1 sec   (7449 perm/sec)   p_kst 8.844000e-01   p_cons 6.592000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAMP3.2_459_10000_0.8844_0.6592_1.png
                gene_name: RAMP3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
RAP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
Cons ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
KS ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
RAP1A   10000 perm   1 sec   (6954 perm/sec)   p_kst 2.400000e-01   p_cons 3.716000e-01   p_joint 9.756000e-01

Outputting figure to mutsig2_images.part000000000143/RAP1A.2_579_10000_0.24_0.3716_0.9756.png
                gene_name: RAP1A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
RAPGEF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
Cons ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
RAPGEF3   10000 perm   2 sec   (5924 perm/sec)   p_kst 6.623000e-01   p_cons 4.930000e-02   p_joint 1.796000e-01

Joint ci ratio: 6.784184e-02	ci left: 1.381755e-01	ci right 1.479286e-01	k: 2860	n:20000
Cons ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
KS ci ratio: 1.971476e-02	ci left: 6.574556e-01	ci right 6.705967e-01	k: 13281	n:20000
RAPGEF3   20000 perm   4 sec   (5262 perm/sec)   p_kst 6.640500e-01   p_cons 4.170000e-02   p_joint 1.430000e-01

Joint ci ratio: 2.953222e-02	ci left: 3.644996e-01	ci right 3.754590e-01	k: 11099	n:30000
Cons ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
KS ci ratio: 1.600173e-02	ci left: 6.613332e-01	ci right 6.720345e-01	k: 20001	n:30000
RAPGEF3   30000 perm   6 sec   (5027 perm/sec)   p_kst 6.667000e-01   p_cons 4.343333e-02   p_joint 3.699667e-01

Joint ci ratio: 3.739611e-02	ci left: 2.114541e-01	ci right 2.195373e-01	k: 8619	n:40000
Cons ci ratio: 9.163214e-02	ci left: 4.174179e-02	ci right 4.577478e-02	k: 1749	n:40000
KS ci ratio: 1.386891e-02	ci left: 6.617048e-01	ci right 6.709711e-01	k: 26654	n:40000
RAPGEF3   40000 perm   8 sec   (4849 perm/sec)   p_kst 6.663500e-01   p_cons 4.372500e-02   p_joint 2.154750e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF3.2_2884_40000_0.66635_0.043725_0.21547.png
                gene_name: RAPGEF3
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 98 percent done.
RARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
KS ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
RARS2   10000 perm   2 sec   (6389 perm/sec)   p_kst 2.853000e-01   p_cons 7.900000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000143/RARS2.2_1817_10000_0.2853_0.79_0.5772.png
                gene_name: RARS2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000143
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 143 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 4422366: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000144> was used as the working directory.
Started at Wed Oct 24 18:06:15 2012
Results reported at Wed Oct 24 18:20:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000144.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000144.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 144  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000144.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1040.29 sec.
    Max Memory :      5460 MB
    Max Swap   :      7719 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
144
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 144
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 144: processing genes 12938 - 13028
Calculating significance of each gene.
Using projection method.
12938	RASGRF2	6.943415e-01
12939	RASGRP1	9.746395e-01
12940	RASGRP2	9.189883e-01
12941	RASGRP3	2.778028e-01
12942	RASGRP4	1
12943	RASIP1	9.673046e-01
12944	RASL10A	1
12945	RASL10B	6.402174e-01
12946	RASL11A	6.730890e-01
12947	RASL11B	2.923869e-01
12948	RASL12	3.588049e-01
12949	RASSF1	1
12950	RASSF10	5.861527e-01
12951	RASSF2	6.612707e-02
12952	RASSF3	1
12953	RASSF4	8.156737e-01
12954	RASSF5	1
12955	RASSF6	3.614906e-01
12956	RASSF7	1
12957	RASSF8	7.872214e-01
12958	RASSF9	7.045619e-01
12959	RAVER1	8.094186e-01
12960	RAVER2	9.199373e-01
12961	RAX	3.619205e-01
12962	RAX2	1
12963	RB1	2.443488e-04
12964	RB1CC1	1
12965	RBAK	2.565080e-01
12966	RBBP4	8.390934e-01
12967	RBBP5	8.336204e-01
12968	RBBP6	2.513722e-01
12969	RBBP7	8.532776e-01
12970	RBBP8	9.625209e-01
12971	RBBP9	1
12972	RBCK1	9.642346e-01
12973	RBKS	1
12974	RBL1	6.296355e-01
12975	RBL2	1
12976	RBM10	1.091877e-04
12977	RBM11	1.667879e-01
12978	RBM12	9.913461e-01
12979	RBM12B	9.178234e-01
12980	RBM14	8.452052e-01
12981	RBM15	5.323881e-01
12982	RBM15B	8.661442e-01
12983	RBM16	7.609160e-01
12984	RBM17	3.992028e-01
12985	RBM18	7.149549e-01
12986	RBM19	3.776218e-03
12987	RBM22	9.361849e-01
12988	RBM23	9.341767e-01
12989	RBM24	6.666954e-02
12990	RBM25	1
12991	RBM26	9.894051e-01
12992	RBM27	4.640049e-01
12993	RBM28	8.598540e-01
12994	RBM3	3.101211e-01
12995	RBM33	9.958881e-01
12996	RBM34	5.298997e-01
12997	RBM38	1
12998	RBM39	7.941624e-01
12999	RBM4	1
13000/18094 13000	RBM41	7.408960e-01
13001	RBM42	4.324642e-01
13002	RBM43	7.777511e-01
13003	RBM44	3.974540e-01
13004	RBM45	2.552670e-01
13005	RBM46	1.100220e-01
13006	RBM47	5.334576e-02
13007	RBM4B	1
13008	RBM5	8.753494e-01
13009	RBM6	1
13010	RBM7	3.016861e-01
13011	RBM8A	1
13012	RBM9	8.644335e-01
13013	RBMS1	7.379448e-01
13014	RBMS2	2.087459e-01
13015	RBMS3	1
13016	RBMX	4.558252e-01
13017	RBMX2	6.438637e-01
13018	RBMXL1	9.171903e-01
13019	RBMXL2	5.387813e-01
13020	RBP1	1
13021	RBP2	1.117002e-03
13022	RBP3	9.990531e-01
13023	RBP4	1
13024	RBP5	4.690916e-01
13025	RBP7	3.359286e-01
13026	RBPJ	8.499432e-01
13027	RBPJL	8.033855e-01
13028	RBPMS	8.337234e-01
Done

Running MutSig 2:
Scatter job 144: processing genes 12938 - 13028
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RBM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
RBM19   10000 perm   3 sec   (3652 perm/sec)   p_kst 1.970000e-02   p_cons 5.209000e-01   p_joint 7.390000e-02

Joint ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
Cons ci ratio: 2.656267e-02	ci left: 5.142991e-01	ci right 5.281947e-01	k: 10425	n:20000
KS ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
RBM19   20000 perm   9 sec   (2314 perm/sec)   p_kst 1.975000e-02   p_cons 5.212500e-01   p_joint 5.485000e-02

Joint ci ratio: 1.052010e-01	ci left: 4.190172e-02	ci right 4.658706e-02	k: 1326	n:30000
Cons ci ratio: 2.128170e-02	ci left: 5.250333e-01	ci right 5.363607e-01	k: 15921	n:30000
KS ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
RBM19   30000 perm   12 sec   (2552 perm/sec)   p_kst 1.966667e-02   p_cons 5.307000e-01   p_joint 4.420000e-02

Joint ci ratio: 8.867843e-02	ci left: 4.450592e-02	ci right 4.866022e-02	k: 1862	n:40000
Cons ci ratio: 1.851597e-02	ci left: 5.234936e-01	ci right 5.333023e-01	k: 21136	n:40000
KS ci ratio: 1.406458e-01	ci left: 1.770872e-02	ci right 2.041174e-02	k: 761	n:40000
RBM19   40000 perm   15 sec   (2688 perm/sec)   p_kst 1.902500e-02   p_cons 5.284000e-01   p_joint 4.655000e-02

Joint ci ratio: 8.298526e-02	ci left: 4.094444e-02	ci right 4.450889e-02	k: 2135	n:50000
Cons ci ratio: 1.651020e-02	ci left: 5.255536e-01	ci right 5.343229e-01	k: 26497	n:50000
KS ci ratio: 1.265789e-01	ci left: 1.762752e-02	ci right 2.002880e-02	k: 940	n:50000
RBM19   50000 perm   18 sec   (2765 perm/sec)   p_kst 1.880000e-02   p_cons 5.299400e-01   p_joint 4.270000e-02

Joint ci ratio: 8.101981e-02	ci left: 3.602660e-02	ci right 3.908501e-02	k: 2252	n:60000
Cons ci ratio: 1.509718e-02	ci left: 5.250964e-01	ci right 5.331008e-01	k: 31746	n:60000
KS ci ratio: 1.152491e-01	ci left: 1.782540e-02	ci right 2.002148e-02	k: 1134	n:60000
RBM19   60000 perm   21 sec   (2806 perm/sec)   p_kst 1.890000e-02   p_cons 5.291000e-01   p_joint 3.753333e-02

Joint ci ratio: 7.411359e-02	ci left: 3.700253e-02	ci right 3.986446e-02	k: 2689	n:70000
Cons ci ratio: 1.401824e-02	ci left: 5.239363e-01	ci right 5.313471e-01	k: 36935	n:70000
KS ci ratio: 1.065430e-01	ci left: 1.795973e-02	ci right 1.999471e-02	k: 1327	n:70000
RBM19   70000 perm   25 sec   (2823 perm/sec)   p_kst 1.895714e-02   p_cons 5.276429e-01   p_joint 3.841429e-02

Joint ci ratio: 6.907368e-02	ci left: 3.736165e-02	ci right 4.004694e-02	k: 3095	n:80000
Cons ci ratio: 1.309168e-02	ci left: 5.249836e-01	ci right 5.319143e-01	k: 42276	n:80000
KS ci ratio: 9.945220e-02	ci left: 1.810176e-02	ci right 2.000835e-02	k: 1523	n:80000
RBM19   80000 perm   28 sec   (2830 perm/sec)   p_kst 1.903750e-02   p_cons 5.284500e-01   p_joint 3.868750e-02

Outputting figure to mutsig2_images.part000000000144/RBM19.17_2979_80000_0.019037_0.52845_0.038687.png
                gene_name: RBM19
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 2 percent done.
RASGRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.496550e-01	ci left: 5.937693e-02	ci right 6.907883e-02	k: 641	n:10000
Cons ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
RASGRF2   10000 perm   2 sec   (4140 perm/sec)   p_kst 3.260000e-02   p_cons 4.265000e-01   p_joint 6.410000e-02

Joint ci ratio: 1.142358e-01	ci left: 5.241537e-02	ci right 5.881460e-02	k: 1111	n:20000
Cons ci ratio: 3.219870e-02	ci left: 4.187339e-01	ci right 4.324878e-01	k: 8512	n:20000
KS ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
RASGRF2   20000 perm   5 sec   (3764 perm/sec)   p_kst 3.410000e-02   p_cons 4.256000e-01   p_joint 5.555000e-02

Joint ci ratio: 8.056943e-02	ci left: 7.017925e-02	ci right 7.610373e-02	k: 2193	n:30000
Cons ci ratio: 2.455781e-02	ci left: 4.535818e-01	ci right 4.648928e-01	k: 13777	n:30000
KS ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
RASGRF2   30000 perm   8 sec   (3593 perm/sec)   p_kst 3.393333e-02   p_cons 4.592333e-01   p_joint 7.310000e-02

Joint ci ratio: 6.924480e-02	ci left: 7.160078e-02	ci right 7.676124e-02	k: 2966	n:40000
Cons ci ratio: 2.125550e-02	ci left: 4.546318e-01	ci right 4.644241e-01	k: 18381	n:40000
KS ci ratio: 1.031831e-01	ci left: 3.302530e-02	ci right 3.664264e-02	k: 1392	n:40000
RASGRF2   40000 perm   11 sec   (3488 perm/sec)   p_kst 3.480000e-02   p_cons 4.595250e-01   p_joint 7.415000e-02

Joint ci ratio: 5.820095e-02	ci left: 8.075396e-02	ci right 8.561456e-02	k: 4158	n:50000
Cons ci ratio: 1.895987e-02	ci left: 4.565032e-01	ci right 4.652613e-01	k: 23044	n:50000
KS ci ratio: 9.164438e-02	ci left: 3.367996e-02	ci right 3.693428e-02	k: 1764	n:50000
RASGRF2   50000 perm   15 sec   (3403 perm/sec)   p_kst 3.528000e-02   p_cons 4.608800e-01   p_joint 8.316000e-02

Outputting figure to mutsig2_images.part000000000144/RASGRF2.14_3822_50000_0.03528_0.46088_0.08316.png
                gene_name: RASGRF2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 4 percent done.
RBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
Cons ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
KS ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
RBP3   10000 perm   2 sec   (4088 perm/sec)   p_kst 9.340000e-02   p_cons 2.945000e-01   p_joint 1.939000e-01

Joint ci ratio: 7.291909e-02	ci left: 1.216273e-01	ci right 1.308816e-01	k: 2524	n:20000
Cons ci ratio: 4.377462e-02	ci left: 2.798927e-01	ci right 2.924695e-01	k: 5723	n:20000
KS ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
RBP3   20000 perm   5 sec   (3693 perm/sec)   p_kst 9.135000e-02   p_cons 2.861500e-01   p_joint 1.262000e-01

Outputting figure to mutsig2_images.part000000000144/RBP3.14_3760_20000_0.09135_0.28615_0.1262.png
                gene_name: RBP3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 6 percent done.
RB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
Cons ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
KS ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
RB1   10000 perm   3 sec   (3609 perm/sec)   p_kst 3.791000e-01   p_cons 5.290000e-01   p_joint 5.002000e-01

Outputting figure to mutsig2_images.part000000000144/RB1.13_2895_10000_0.3791_0.529_0.5002.png
                gene_name: RB1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 8 percent done.
RBM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
Cons ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
KS ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
RBM10   10000 perm   3 sec   (3984 perm/sec)   p_kst 6.190000e-02   p_cons 3.180000e-01   p_joint 8.490000e-02

Joint ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
Cons ci ratio: 4.012032e-02	ci left: 3.165700e-01	ci right 3.295814e-01	k: 6461	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
RBM10   20000 perm   6 sec   (3624 perm/sec)   p_kst 5.950000e-02   p_cons 3.230500e-01   p_joint 9.820000e-02

Joint ci ratio: 6.787038e-02	ci left: 9.666025e-02	ci right 1.034841e-01	k: 3001	n:30000
Cons ci ratio: 3.286074e-02	ci left: 3.164148e-01	ci right 3.270197e-01	k: 9651	n:30000
KS ci ratio: 9.076532e-02	ci left: 5.587051e-02	ci right 6.121539e-02	k: 1755	n:30000
RBM10   30000 perm   9 sec   (3522 perm/sec)   p_kst 5.850000e-02   p_cons 3.217000e-01   p_joint 1.000333e-01

Outputting figure to mutsig2_images.part000000000144/RBM10.12_2885_30000_0.0585_0.3217_0.10003.png
                gene_name: RBM10
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 10 percent done.
RBBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
RBBP6   10000 perm   3 sec   (3394 perm/sec)   p_kst 1.517000e-01   p_cons 8.470000e-01   p_joint 2.663000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP6.11_5505_10000_0.1517_0.847_0.2663.png
                gene_name: RBBP6
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 12 percent done.
RBM16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
RBM16   10000 perm   2 sec   (4016 perm/sec)   p_kst 2.779000e-01   p_cons 8.780000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000144/RBM16.11_3896_10000_0.2779_0.878_0.4856.png
                gene_name: RBM16
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 13 percent done.
RBM47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
Cons ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
RBM47   10000 perm   2 sec   (4822 perm/sec)   p_kst 4.691000e-01   p_cons 2.190000e-02   p_joint 9.570000e-02

Joint ci ratio: 6.636013e-02	ci left: 1.435981e-01	ci right 1.535043e-01	k: 2970	n:20000
Cons ci ratio: 1.837425e-01	ci left: 2.020279e-02	ci right 2.433773e-02	k: 444	n:20000
KS ci ratio: 2.838697e-02	ci left: 4.810996e-01	ci right 4.950039e-01	k: 9761	n:20000
RBM47   20000 perm   5 sec   (4364 perm/sec)   p_kst 4.880500e-01   p_cons 2.220000e-02   p_joint 1.485000e-01

Joint ci ratio: 6.928981e-02	ci left: 9.304996e-02	ci right 9.976176e-02	k: 2891	n:30000
Cons ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
KS ci ratio: 2.324737e-02	ci left: 4.808956e-01	ci right 4.922403e-01	k: 14597	n:30000
RBM47   30000 perm   7 sec   (4169 perm/sec)   p_kst 4.865667e-01   p_cons 2.240000e-02   p_joint 9.636667e-02

Joint ci ratio: 6.431652e-02	ci left: 8.223544e-02	ci right 8.772499e-02	k: 3398	n:40000
Cons ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
KS ci ratio: 2.019428e-02	ci left: 4.801410e-01	ci right 4.899612e-01	k: 19402	n:40000
RBM47   40000 perm   10 sec   (4046 perm/sec)   p_kst 4.850500e-01   p_cons 2.247500e-02   p_joint 8.495000e-02

Joint ci ratio: 5.748776e-02	ci left: 8.262889e-02	ci right 8.753940e-02	k: 4253	n:50000
Cons ci ratio: 1.145626e-01	ci left: 2.156773e-02	ci right 2.420806e-02	k: 1143	n:50000
KS ci ratio: 1.802165e-02	ci left: 4.817900e-01	ci right 4.905716e-01	k: 24309	n:50000
RBM47   50000 perm   13 sec   (3956 perm/sec)   p_kst 4.861800e-01   p_cons 2.286000e-02   p_joint 8.506000e-02

Joint ci ratio: 5.127930e-02	ci left: 8.646963e-02	ci right 9.103691e-02	k: 5324	n:60000
Cons ci ratio: 1.045343e-01	ci left: 2.170164e-02	ci right 2.411148e-02	k: 1373	n:60000
KS ci ratio: 1.644483e-02	ci left: 4.823765e-01	ci right 4.903915e-01	k: 29183	n:60000
RBM47   60000 perm   15 sec   (3875 perm/sec)   p_kst 4.863833e-01   p_cons 2.288333e-02   p_joint 8.873333e-02

Joint ci ratio: 4.916404e-02	ci left: 8.120657e-02	ci right 8.531376e-02	k: 5827	n:70000
Cons ci ratio: 9.674917e-02	ci left: 2.180455e-02	ci right 2.403524e-02	k: 1603	n:70000
KS ci ratio: 1.523800e-02	ci left: 4.822481e-01	ci right 4.896673e-01	k: 34017	n:70000
RBM47   70000 perm   18 sec   (3791 perm/sec)   p_kst 4.859571e-01   p_cons 2.290000e-02   p_joint 8.324286e-02

Outputting figure to mutsig2_images.part000000000144/RBM47.9_1798_70000_0.48596_0.0229_0.083243.png
                gene_name: RBM47
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.085 

Current progress: 15 percent done.
RASGRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
RASGRP3   10000 perm   2 sec   (4608 perm/sec)   p_kst 3.292000e-01   p_cons 4.300000e-02   p_joint 1.035000e-01

Joint ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
Cons ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
KS ci ratio: 4.100820e-02	ci left: 3.071228e-01	ci right 3.200315e-01	k: 6271	n:20000
RASGRP3   20000 perm   5 sec   (4155 perm/sec)   p_kst 3.135500e-01   p_cons 4.450000e-02   p_joint 1.032500e-01

Joint ci ratio: 7.056612e-02	ci left: 8.996598e-02	ci right 9.657970e-02	k: 2797	n:30000
Cons ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
KS ci ratio: 3.292358e-02	ci left: 3.155852e-01	ci right 3.261828e-01	k: 9626	n:30000
RASGRP3   30000 perm   8 sec   (3937 perm/sec)   p_kst 3.208667e-01   p_cons 4.553333e-02   p_joint 9.323333e-02

Joint ci ratio: 6.198343e-02	ci left: 8.807550e-02	ci right 9.373406e-02	k: 3635	n:40000
Cons ci ratio: 9.013425e-02	ci left: 4.311135e-02	ci right 4.720501e-02	k: 1805	n:40000
KS ci ratio: 2.851757e-02	ci left: 3.162262e-01	ci right 3.253998e-01	k: 12832	n:40000
RASGRP3   40000 perm   10 sec   (3814 perm/sec)   p_kst 3.208000e-01   p_cons 4.512500e-02   p_joint 9.087500e-02

Outputting figure to mutsig2_images.part000000000144/RASGRP3.8_2137_40000_0.3208_0.045125_0.090875.png
                gene_name: RASGRP3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 17 percent done.
RASSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
Cons ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
KS ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
RASSF2   10000 perm   2 sec   (5255 perm/sec)   p_kst 6.529000e-01   p_cons 2.898000e-01   p_joint 5.796000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF2.8_1021_10000_0.6529_0.2898_0.5796.png
                gene_name: RASSF2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 19 percent done.
RBAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
RBAK   10000 perm   2 sec   (4522 perm/sec)   p_kst 2.295000e-01   p_cons 2.125000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000144/RBAK.8_2161_10000_0.2295_0.2125_0.3909.png
                gene_name: RBAK
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 21 percent done.
RBM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
Cons ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
KS ci ratio: 2.734739e-02	ci left: 6.633033e-01	ci right 6.817961e-01	k: 6726	n:10000
RBM15   10000 perm   2 sec   (4286 perm/sec)   p_kst 6.726000e-01   p_cons 8.867000e-01   p_joint 8.746000e-01

Outputting figure to mutsig2_images.part000000000144/RBM15.8_2942_10000_0.6726_0.8867_0.8746.png
                gene_name: RBM15
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 23 percent done.
RBM27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.766047e-02	ci left: 8.238140e-01	ci right 8.385925e-01	k: 8313	n:10000
KS ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
RBM27   10000 perm   2 sec   (4400 perm/sec)   p_kst 8.968000e-01   p_cons 8.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM27.8_3267_10000_0.8968_0.8313_1.png
                gene_name: RBM27
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
RBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
RBL1   10000 perm   2 sec   (4290 perm/sec)   p_kst 4.726000e-01   p_cons 6.045000e-01   p_joint 6.317000e-01

Outputting figure to mutsig2_images.part000000000144/RBL1.7_3304_10000_0.4726_0.6045_0.6317.png
                gene_name: RBL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
RBM44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
Cons ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
KS ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
RBM44   10000 perm   2 sec   (4666 perm/sec)   p_kst 6.113000e-01   p_cons 3.352000e-01   p_joint 6.563000e-01

Outputting figure to mutsig2_images.part000000000144/RBM44.6_3215_10000_0.6113_0.3352_0.6563.png
                gene_name: RBM44
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 29 percent done.
RBM46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
KS ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
RBM46   10000 perm   2 sec   (5534 perm/sec)   p_kst 3.674000e-01   p_cons 8.911000e-01   p_joint 5.213000e-01

Outputting figure to mutsig2_images.part000000000144/RBM46.5_1618_10000_0.3674_0.8911_0.5213.png
                gene_name: RBM46
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 31 percent done.
RBM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
Cons ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
KS ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
RBM6   10000 perm   2 sec   (4721 perm/sec)   p_kst 3.441000e-01   p_cons 1.122000e-01   p_joint 1.672000e-01

Joint ci ratio: 5.055938e-02	ci left: 2.252228e-01	ci right 2.369555e-01	k: 4621	n:20000
Cons ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
KS ci ratio: 3.743211e-02	ci left: 3.474687e-01	ci right 3.607738e-01	k: 7082	n:20000
RBM6   20000 perm   5 sec   (4274 perm/sec)   p_kst 3.541000e-01   p_cons 1.157000e-01   p_joint 2.310500e-01

Outputting figure to mutsig2_images.part000000000144/RBM6.5_3452_20000_0.3541_0.1157_0.23105.png
                gene_name: RBM6
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 33 percent done.
RBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
RBP2   10000 perm   2 sec   (6558 perm/sec)   p_kst 3.573000e-01   p_cons 5.209000e-01   p_joint 4.885000e-01

Outputting figure to mutsig2_images.part000000000144/RBP2.5_421_10000_0.3573_0.5209_0.4885.png
                gene_name: RBP2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 35 percent done.
RASSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
Cons ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
KS ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
RASSF9   10000 perm   2 sec   (6034 perm/sec)   p_kst 3.863000e-01   p_cons 7.059000e-01   p_joint 7.215000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF9.4_1316_10000_0.3863_0.7059_0.7215.png
                gene_name: RASSF9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 37 percent done.
RBM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
Cons ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
RBM12   10000 perm   2 sec   (4944 perm/sec)   p_kst 6.834000e-01   p_cons 7.238000e-01   p_joint 9.419000e-01

Outputting figure to mutsig2_images.part000000000144/RBM12.4_2803_10000_0.6834_0.7238_0.9419.png
                gene_name: RBM12
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 38 percent done.
RBM12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
RBM12B   10000 perm   2 sec   (4718 perm/sec)   p_kst 6.817000e-01   p_cons 3.205000e-01   p_joint 6.795000e-01

Outputting figure to mutsig2_images.part000000000144/RBM12B.4_3010_10000_0.6817_0.3205_0.6795.png
                gene_name: RBM12B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 40 percent done.
RBM24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
KS ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
RBM24   10000 perm   2 sec   (6257 perm/sec)   p_kst 7.840000e-02   p_cons 1.320000e-02   p_joint 2.810000e-02

Joint ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
Cons ci ratio: 2.351824e-01	ci left: 1.208789e-02	ci right 1.535574e-02	k: 273	n:20000
KS ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
RBM24   20000 perm   4 sec   (5571 perm/sec)   p_kst 7.750000e-02   p_cons 1.365000e-02   p_joint 4.265000e-02

Joint ci ratio: 9.003241e-02	ci left: 5.675135e-02	ci right 6.213436e-02	k: 1782	n:30000
Cons ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
KS ci ratio: 7.788261e-02	ci left: 7.482603e-02	ci right 8.092268e-02	k: 2335	n:30000
RBM24   30000 perm   6 sec   (5293 perm/sec)   p_kst 7.783333e-02   p_cons 1.010000e-02   p_joint 5.940000e-02

Joint ci ratio: 6.752695e-02	ci left: 7.507021e-02	ci right 8.034129e-02	k: 3107	n:40000
Cons ci ratio: 1.935541e-01	ci left: 9.167106e-03	ci right 1.115497e-02	k: 405	n:40000
KS ci ratio: 6.702552e-02	ci left: 7.612858e-02	ci right 8.143276e-02	k: 3150	n:40000
RBM24   40000 perm   8 sec   (5111 perm/sec)   p_kst 7.875000e-02   p_cons 1.012500e-02   p_joint 7.767500e-02

Joint ci ratio: 6.261880e-02	ci left: 7.039960e-02	ci right 7.497016e-02	k: 3633	n:50000
Cons ci ratio: 1.760346e-01	ci left: 8.955101e-03	ci right 1.070251e-02	k: 490	n:50000
KS ci ratio: 6.008838e-02	ci left: 7.607815e-02	ci right 8.081093e-02	k: 3921	n:50000
RBM24   50000 perm   10 sec   (4935 perm/sec)   p_kst 7.842000e-02   p_cons 9.800000e-03   p_joint 7.266000e-02

Joint ci ratio: 6.284266e-02	ci left: 5.898298e-02	ci right 6.282629e-02	k: 3653	n:60000
Cons ci ratio: 1.608627e-01	ci left: 9.011227e-03	ci right 1.060339e-02	k: 587	n:60000
KS ci ratio: 5.546533e-02	ci left: 7.471448e-02	ci right 7.899322e-02	k: 4610	n:60000
RBM24   60000 perm   13 sec   (4795 perm/sec)   p_kst 7.683333e-02   p_cons 9.783333e-03   p_joint 6.088333e-02

Joint ci ratio: 5.581365e-02	ci left: 6.398831e-02	ci right 6.767635e-02	k: 4607	n:70000
Cons ci ratio: 1.490398e-01	ci left: 9.055967e-03	ci right 1.052795e-02	k: 684	n:70000
KS ci ratio: 5.124528e-02	ci left: 7.516257e-02	ci right 7.912970e-02	k: 5399	n:70000
RBM24   70000 perm   15 sec   (4673 perm/sec)   p_kst 7.712857e-02   p_cons 9.771429e-03   p_joint 6.581429e-02

Joint ci ratio: 4.817467e-02	ci left: 7.459312e-02	ci right 7.828767e-02	k: 6114	n:80000
Cons ci ratio: 1.396717e-01	ci left: 9.068616e-03	ci right 1.044229e-02	k: 779	n:80000
KS ci ratio: 4.788278e-02	ci left: 7.544609e-02	ci right 7.915963e-02	k: 6183	n:80000
RBM24   80000 perm   18 sec   (4550 perm/sec)   p_kst 7.728750e-02   p_cons 9.737500e-03   p_joint 7.642500e-02

Joint ci ratio: 4.799688e-02	ci left: 6.734150e-02	ci right 7.066413e-02	k: 6209	n:90000
Cons ci ratio: 1.322558e-01	ci left: 9.026978e-03	ci right 1.031603e-02	k: 869	n:90000
KS ci ratio: 4.519364e-02	ci left: 7.539835e-02	ci right 7.889563e-02	k: 6942	n:90000
RBM24   90000 perm   20 sec   (4448 perm/sec)   p_kst 7.713333e-02   p_cons 9.655556e-03   p_joint 6.898889e-02

Joint ci ratio: 4.537865e-02	ci left: 6.786208e-02	ci right 7.102294e-02	k: 6943	n:100000
Cons ci ratio: 1.262404e-01	ci left: 8.946781e-03	ci right 1.016192e-02	k: 954	n:100000
KS ci ratio: 4.295127e-02	ci left: 7.523615e-02	ci right 7.854844e-02	k: 7688	n:100000
RBM24   100000 perm   23 sec   (4356 perm/sec)   p_kst 7.688000e-02   p_cons 9.540000e-03   p_joint 6.943000e-02

Joint ci ratio: 4.301444e-02	ci left: 6.868801e-02	ci right 7.171651e-02	k: 7721	n:110000
Cons ci ratio: 1.195354e-01	ci left: 9.102755e-03	ci right 1.026877e-02	k: 1064	n:110000
KS ci ratio: 4.085546e-02	ci left: 7.564733e-02	ci right 7.881137e-02	k: 8494	n:110000
RBM24   110000 perm   26 sec   (4266 perm/sec)   p_kst 7.721818e-02   p_cons 9.672727e-03   p_joint 7.019091e-02

Joint ci ratio: 4.404644e-02	ci left: 6.055127e-02	ci right 6.328662e-02	k: 7429	n:120000
Cons ci ratio: 1.145869e-01	ci left: 9.104593e-03	ci right 1.021930e-02	k: 1158	n:120000
KS ci ratio: 3.909848e-02	ci left: 7.577850e-02	ci right 7.880863e-02	k: 9274	n:120000
RBM24   120000 perm   29 sec   (4182 perm/sec)   p_kst 7.728333e-02   p_cons 9.650000e-03   p_joint 6.190833e-02

Joint ci ratio: 4.215170e-02	ci left: 6.106061e-02	ci right 6.369742e-02	k: 8108	n:130000
Cons ci ratio: 1.099407e-01	ci left: 9.151887e-03	ci right 1.022400e-02	k: 1258	n:130000
KS ci ratio: 3.758471e-02	ci left: 7.576232e-02	ci right 7.867196e-02	k: 10037	n:130000
RBM24   130000 perm   32 sec   (4102 perm/sec)   p_kst 7.720769e-02   p_cons 9.676923e-03   p_joint 6.236923e-02

Joint ci ratio: 4.062031e-02	ci left: 6.110310e-02	ci right 6.364363e-02	k: 8731	n:140000
Cons ci ratio: 1.057388e-01	ci left: 9.207117e-03	ci right 1.024191e-02	k: 1360	n:140000
KS ci ratio: 3.621782e-02	ci left: 7.581415e-02	ci right 7.861767e-02	k: 10809	n:140000
RBM24   140000 perm   35 sec   (4024 perm/sec)   p_kst 7.720714e-02   p_cons 9.714286e-03   p_joint 6.236429e-02

Joint ci ratio: 3.920881e-02	ci left: 6.124713e-02	ci right 6.370315e-02	k: 9370	n:150000
Cons ci ratio: 1.020550e-01	ci left: 9.242662e-03	ci right 1.024309e-02	k: 1460	n:150000
KS ci ratio: 3.498180e-02	ci left: 7.589381e-02	ci right 7.860256e-02	k: 11586	n:150000
RBM24   150000 perm   38 sec   (3950 perm/sec)   p_kst 7.724000e-02   p_cons 9.733333e-03   p_joint 6.246667e-02

Joint ci ratio: 4.330724e-02	ci left: 4.765659e-02	ci right 4.977230e-02	k: 7793	n:160000
Cons ci ratio: 9.835014e-02	ci left: 9.347480e-03	ci right 1.032041e-02	k: 1572	n:160000
KS ci ratio: 3.384646e-02	ci left: 7.603935e-02	ci right 7.866349e-02	k: 12375	n:160000
RBM24   160000 perm   41 sec   (3882 perm/sec)   p_kst 7.734375e-02   p_cons 9.825000e-03   p_joint 4.870625e-02

Outputting figure to mutsig2_images.part000000000144/RBM24.4_760_160000_0.077344_0.009825_0.048706.png
                gene_name: RBM24
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.0098 
      ci_cons_bounds_left: 0.0093 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 42 percent done.
RBM28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
RBM28   10000 perm   2 sec   (5208 perm/sec)   p_kst 1.870000e-01   p_cons 9.110000e-02   p_joint 8.740000e-02

Joint ci ratio: 7.420271e-02	ci left: 1.178879e-01	ci right 1.270222e-01	k: 2448	n:20000
Cons ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
KS ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
RBM28   20000 perm   4 sec   (4657 perm/sec)   p_kst 1.831500e-01   p_cons 9.035000e-02   p_joint 1.224000e-01

Outputting figure to mutsig2_images.part000000000144/RBM28.4_2356_20000_0.18315_0.09035_0.1224.png
                gene_name: RBM28
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 44 percent done.
RBM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
Cons ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
KS ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
RBM45   10000 perm   2 sec   (5595 perm/sec)   p_kst 2.460000e-01   p_cons 3.023000e-01   p_joint 2.742000e-01

Outputting figure to mutsig2_images.part000000000144/RBM45.4_1461_10000_0.246_0.3023_0.2742.png
                gene_name: RBM45
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 46 percent done.
RASIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
Cons ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
KS ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
RASIP1   10000 perm   2 sec   (5128 perm/sec)   p_kst 7.060000e-02   p_cons 1.778000e-01   p_joint 8.680000e-02

Joint ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
Cons ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
KS ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
RASIP1   20000 perm   4 sec   (4576 perm/sec)   p_kst 7.005000e-02   p_cons 1.794000e-01   p_joint 8.085000e-02

Joint ci ratio: 9.827099e-02	ci left: 4.788630e-02	ci right 5.286790e-02	k: 1510	n:30000
Cons ci ratio: 4.854084e-02	ci left: 1.742144e-01	ci right 1.829146e-01	k: 5356	n:30000
KS ci ratio: 8.205170e-02	ci left: 6.779179e-02	ci right 7.362501e-02	k: 2120	n:30000
RASIP1   30000 perm   7 sec   (4346 perm/sec)   p_kst 7.066667e-02   p_cons 1.785333e-01   p_joint 5.033333e-02

Outputting figure to mutsig2_images.part000000000144/RASIP1.3_2936_30000_0.070667_0.17853_0.050333.png
                gene_name: RASIP1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 48 percent done.
RASSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
RASSF6   10000 perm   2 sec   (6028 perm/sec)   p_kst 1.508000e-01   p_cons 4.000000e-03   p_joint 1.750000e-02

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
KS ci ratio: 6.624234e-02	ci left: 1.440419e-01	ci right 1.539604e-01	k: 2979	n:20000
RASSF6   20000 perm   4 sec   (5265 perm/sec)   p_kst 1.489500e-01   p_cons 3.850000e-03   p_joint 6.600000e-03

Joint ci ratio: 2.615209e-01	ci left: 6.461458e-03	ci right 8.435732e-03	k: 222	n:30000
Cons ci ratio: 3.556384e-01	ci left: 3.317477e-03	ci right 4.781146e-03	k: 120	n:30000
KS ci ratio: 5.372726e-02	ci left: 1.466360e-01	ci right 1.547651e-01	k: 4520	n:30000
RASSF6   30000 perm   6 sec   (4965 perm/sec)   p_kst 1.506667e-01   p_cons 4.000000e-03   p_joint 7.400000e-03

Joint ci ratio: 2.697914e-01	ci left: 4.542095e-03	ci right 5.981167e-03	k: 209	n:40000
Cons ci ratio: 3.008971e-01	ci left: 3.589952e-03	ci right 4.883651e-03	k: 168	n:40000
KS ci ratio: 4.641151e-02	ci left: 1.478260e-01	ci right 1.548747e-01	k: 6053	n:40000
RASSF6   40000 perm   8 sec   (4793 perm/sec)   p_kst 1.513250e-01   p_cons 4.200000e-03   p_joint 5.225000e-03

Joint ci ratio: 2.076047e-01	ci left: 6.344851e-03	ci right 7.833240e-03	k: 353	n:50000
Cons ci ratio: 2.584444e-01	ci left: 3.988372e-03	ci right 5.190261e-03	k: 228	n:50000
KS ci ratio: 4.161714e-02	ci left: 1.475547e-01	ci right 1.538459e-01	k: 7534	n:50000
RASSF6   50000 perm   11 sec   (4650 perm/sec)   p_kst 1.506800e-01   p_cons 4.560000e-03   p_joint 7.060000e-03

Joint ci ratio: 1.596335e-01	ci left: 9.155264e-03	ci right 1.075934e-02	k: 596	n:60000
Cons ci ratio: 2.650110e-01	ci left: 3.152148e-03	ci right 4.130165e-03	k: 217	n:60000
KS ci ratio: 3.815022e-02	ci left: 1.467712e-01	ci right 1.524960e-01	k: 8977	n:60000
RASSF6   60000 perm   13 sec   (4532 perm/sec)   p_kst 1.496167e-01   p_cons 3.616667e-03   p_joint 9.933333e-03

Joint ci ratio: 1.472061e-01	ci left: 9.289904e-03	ci right 1.077970e-02	k: 701	n:70000
Cons ci ratio: 2.408022e-01	ci left: 3.317453e-03	ci right 4.238719e-03	k: 263	n:70000
KS ci ratio: 3.541043e-02	ci left: 1.463412e-01	ci right 1.516308e-01	k: 10428	n:70000
RASSF6   70000 perm   16 sec   (4414 perm/sec)   p_kst 1.489714e-01   p_cons 3.757143e-03   p_joint 1.001429e-02

Joint ci ratio: 1.494624e-01	ci left: 7.887511e-03	ci right 9.173512e-03	k: 681	n:80000
Cons ci ratio: 2.281972e-01	ci left: 3.255741e-03	ci right 4.105878e-03	k: 293	n:80000
KS ci ratio: 3.306780e-02	ci left: 1.469362e-01	ci right 1.518892e-01	k: 11952	n:80000
RASSF6   80000 perm   19 sec   (4314 perm/sec)   p_kst 1.494000e-01   p_cons 3.662500e-03   p_joint 8.512500e-03

Joint ci ratio: 1.443956e-01	ci left: 7.535452e-03	ci right 8.718803e-03	k: 730	n:90000
Cons ci ratio: 2.144157e-01	ci left: 3.303333e-03	ci right 4.106956e-03	k: 332	n:90000
KS ci ratio: 3.115366e-02	ci left: 1.472645e-01	ci right 1.519359e-01	k: 13463	n:90000
RASSF6   90000 perm   21 sec   (4222 perm/sec)   p_kst 1.495889e-01   p_cons 3.688889e-03   p_joint 8.111111e-03

Joint ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
Cons ci ratio: 2.025900e-01	ci left: 3.352136e-03	ci right 4.117093e-03	k: 372	n:100000
KS ci ratio: 2.945317e-02	ci left: 1.482592e-01	ci right 1.527011e-01	k: 15047	n:100000
RASSF6   100000 perm   24 sec   (4117 perm/sec)   p_kst 1.504700e-01   p_cons 3.720000e-03   p_joint 7.160000e-03

Joint ci ratio: 1.085847e-01	ci left: 1.107289e-02	ci right 1.235305e-02	k: 1287	n:110000
Cons ci ratio: 1.932330e-01	ci left: 3.367101e-03	ci right 4.095813e-03	k: 409	n:110000
KS ci ratio: 2.837448e-02	ci left: 1.457526e-01	ci right 1.499568e-01	k: 16263	n:110000
RASSF6   110000 perm   27 sec   (4045 perm/sec)   p_kst 1.478455e-01   p_cons 3.718182e-03   p_joint 1.170000e-02

Joint ci ratio: 1.133588e-01	ci left: 9.307041e-03	ci right 1.043350e-02	k: 1183	n:120000
Cons ci ratio: 1.869619e-01	ci left: 3.308731e-03	ci right 3.998932e-03	k: 437	n:120000
KS ci ratio: 2.716430e-02	ci left: 1.458626e-01	ci right 1.498877e-01	k: 17744	n:120000
RASSF6   120000 perm   30 sec   (3978 perm/sec)   p_kst 1.478667e-01   p_cons 3.641667e-03   p_joint 9.858333e-03

Joint ci ratio: 1.250038e-01	ci left: 7.038166e-03	ci right 7.984001e-03	k: 975	n:130000
Cons ci ratio: 1.814595e-01	ci left: 3.252320e-03	ci right 3.908592e-03	k: 464	n:130000
KS ci ratio: 2.608648e-02	ci left: 1.460584e-01	ci right 1.499265e-01	k: 19238	n:130000
RASSF6   130000 perm   33 sec   (3913 perm/sec)   p_kst 1.479846e-01   p_cons 3.569231e-03   p_joint 7.500000e-03

Joint ci ratio: 9.840694e-02	ci left: 1.065532e-02	ci right 1.176506e-02	k: 1568	n:140000
Cons ci ratio: 1.732635e-01	ci left: 3.327187e-03	ci right 3.965071e-03	k: 509	n:140000
KS ci ratio: 2.512328e-02	ci left: 1.462715e-01	ci right 1.500002e-01	k: 20738	n:140000
RASSF6   140000 perm   36 sec   (3845 perm/sec)   p_kst 1.481286e-01   p_cons 3.635714e-03   p_joint 1.120000e-02

Joint ci ratio: 1.284205e-01	ci left: 5.776730e-03	ci right 6.575872e-03	k: 925	n:150000
Cons ci ratio: 1.677630e-01	ci left: 3.322369e-03	ci right 3.937064e-03	k: 543	n:150000
KS ci ratio: 2.429859e-02	ci left: 1.460539e-01	ci right 1.496531e-01	k: 22177	n:150000
RASSF6   150000 perm   40 sec   (3780 perm/sec)   p_kst 1.478467e-01   p_cons 3.620000e-03   p_joint 6.166667e-03

Joint ci ratio: 9.914895e-02	ci left: 9.195054e-03	ci right 1.016034e-02	k: 1547	n:160000
Cons ci ratio: 1.623330e-01	ci left: 3.336422e-03	ci right 3.931787e-03	k: 580	n:160000
KS ci ratio: 2.352149e-02	ci left: 1.461700e-01	ci right 1.496553e-01	k: 23665	n:160000
RASSF6   160000 perm   43 sec   (3721 perm/sec)   p_kst 1.479062e-01   p_cons 3.625000e-03   p_joint 9.668750e-03

Joint ci ratio: 1.217717e-01	ci left: 5.689731e-03	ci right 6.433148e-03	k: 1029	n:170000
Cons ci ratio: 1.577830e-01	ci left: 3.332151e-03	ci right 3.908510e-03	k: 614	n:170000
KS ci ratio: 2.283366e-02	ci left: 1.460633e-01	ci right 1.494428e-01	k: 25117	n:170000
RASSF6   170000 perm   46 sec   (3662 perm/sec)   p_kst 1.477471e-01   p_cons 3.611765e-03   p_joint 6.052941e-03

Joint ci ratio: 1.171360e-01	ci left: 5.820993e-03	ci right 6.550604e-03	k: 1112	n:180000
Cons ci ratio: 1.537143e-01	ci left: 3.323219e-03	ci right 3.881845e-03	k: 647	n:180000
KS ci ratio: 2.219548e-02	ci left: 1.460528e-01	ci right 1.493364e-01	k: 26584	n:180000
RASSF6   180000 perm   50 sec   (3604 perm/sec)   p_kst 1.476889e-01   p_cons 3.594444e-03   p_joint 6.177778e-03

Joint ci ratio: 1.369321e-01	ci left: 4.000567e-03	ci right 4.593661e-03	k: 815	n:190000
Cons ci ratio: 1.487440e-01	ci left: 3.371136e-03	ci right 3.917864e-03	k: 691	n:190000
KS ci ratio: 2.158092e-02	ci left: 1.463589e-01	ci right 1.495571e-01	k: 28111	n:190000
RASSF6   190000 perm   54 sec   (3547 perm/sec)   p_kst 1.479526e-01   p_cons 3.636842e-03   p_joint 4.289474e-03

Joint ci ratio: 1.303720e-01	ci left: 4.206531e-03	ci right 4.797972e-03	k: 899	n:200000
Cons ci ratio: 1.434463e-01	ci left: 3.453088e-03	ci right 3.991454e-03	k: 743	n:200000
KS ci ratio: 2.103848e-02	ci left: 1.463518e-01	ci right 1.494685e-01	k: 29581	n:200000
RASSF6   200000 perm   57 sec   (3493 perm/sec)   p_kst 1.479050e-01   p_cons 3.715000e-03   p_joint 4.495000e-03

Joint ci ratio: 1.270277e-01	ci left: 4.227436e-03	ci right 4.805420e-03	k: 947	n:210000
Cons ci ratio: 1.396487e-01	ci left: 3.476982e-03	ci right 4.003529e-03	k: 784	n:210000
KS ci ratio: 2.050207e-02	ci left: 1.467493e-01	ci right 1.497938e-01	k: 31136	n:210000
RASSF6   210000 perm   61 sec   (3438 perm/sec)   p_kst 1.482667e-01   p_cons 3.733333e-03   p_joint 4.509524e-03

Joint ci ratio: 1.236169e-01	ci left: 4.268642e-03	ci right 4.835442e-03	k: 1000	n:220000
Cons ci ratio: 1.357259e-01	ci left: 3.520832e-03	ci right 4.037832e-03	k: 830	n:220000
KS ci ratio: 2.001510e-02	ci left: 1.469802e-01	ci right 1.499563e-01	k: 32662	n:220000
RASSF6   220000 perm   65 sec   (3384 perm/sec)   p_kst 1.484636e-01   p_cons 3.772727e-03   p_joint 4.545455e-03

Joint ci ratio: 1.210450e-01	ci left: 4.264284e-03	ci right 4.817881e-03	k: 1043	n:230000
Cons ci ratio: 1.328019e-01	ci left: 3.523219e-03	ci right 4.028544e-03	k: 867	n:230000
KS ci ratio: 1.957370e-02	ci left: 1.470317e-01	ci right 1.499424e-01	k: 34151	n:230000
RASSF6   230000 perm   69 sec   (3332 perm/sec)   p_kst 1.484826e-01   p_cons 3.769565e-03   p_joint 4.534783e-03

Joint ci ratio: 1.078026e-01	ci left: 5.183684e-03	ci right 5.778355e-03	k: 1314	n:240000
Cons ci ratio: 1.296999e-01	ci left: 3.545675e-03	ci right 4.041427e-03	k: 909	n:240000
KS ci ratio: 1.916691e-02	ci left: 1.469924e-01	ci right 1.498411e-01	k: 35619	n:240000
RASSF6   240000 perm   73 sec   (3283 perm/sec)   p_kst 1.484125e-01   p_cons 3.787500e-03   p_joint 5.475000e-03

Joint ci ratio: 1.057329e-01	ci left: 5.178781e-03	ci right 5.760774e-03	k: 1366	n:250000
Cons ci ratio: 1.264726e-01	ci left: 3.585829e-03	ci right 4.073785e-03	k: 956	n:250000
KS ci ratio: 1.878595e-02	ci left: 1.469368e-01	ci right 1.497273e-01	k: 37082	n:250000
RASSF6   250000 perm   77 sec   (3235 perm/sec)   p_kst 1.483280e-01   p_cons 3.824000e-03   p_joint 5.464000e-03

Joint ci ratio: 1.038517e-01	ci left: 5.166863e-03	ci right 5.736554e-03	k: 1416	n:260000
Cons ci ratio: 1.240967e-01	ci left: 3.585760e-03	ci right 4.063866e-03	k: 993	n:260000
KS ci ratio: 1.840974e-02	ci left: 1.471198e-01	ci right 1.498572e-01	k: 38606	n:260000
RASSF6   260000 perm   82 sec   (3190 perm/sec)   p_kst 1.484846e-01   p_cons 3.819231e-03   p_joint 5.446154e-03

Joint ci ratio: 1.156512e-01	ci left: 3.991917e-03	ci right 4.485484e-03	k: 1143	n:270000
Cons ci ratio: 1.219687e-01	ci left: 3.578594e-03	ci right 4.046971e-03	k: 1028	n:270000
KS ci ratio: 1.806452e-02	ci left: 1.471606e-01	ci right 1.498469e-01	k: 40095	n:270000
RASSF6   270000 perm   86 sec   (3146 perm/sec)   p_kst 1.485000e-01   p_cons 3.807407e-03   p_joint 4.233333e-03

Joint ci ratio: 9.977860e-02	ci left: 5.208507e-03	ci right 5.758947e-03	k: 1534	n:280000
Cons ci ratio: 1.192177e-01	ci left: 3.617048e-03	ci right 4.079029e-03	k: 1076	n:280000
KS ci ratio: 1.774052e-02	ci left: 1.471634e-01	ci right 1.498010e-01	k: 41574	n:280000
RASSF6   280000 perm   90 sec   (3103 perm/sec)   p_kst 1.484786e-01   p_cons 3.842857e-03   p_joint 5.478571e-03

Joint ci ratio: 9.769842e-02	ci left: 5.250875e-03	ci right 5.793561e-03	k: 1600	n:290000
Cons ci ratio: 1.169582e-01	ci left: 3.632874e-03	ci right 4.087474e-03	k: 1118	n:290000
KS ci ratio: 1.743073e-02	ci left: 1.472041e-01	ci right 1.497960e-01	k: 43064	n:290000
RASSF6   290000 perm   95 sec   (3060 perm/sec)   p_kst 1.484966e-01   p_cons 3.855172e-03   p_joint 5.517241e-03

Joint ci ratio: 9.603320e-02	ci left: 5.257991e-03	ci right 5.791629e-03	k: 1656	n:300000
Cons ci ratio: 1.154229e-01	ci left: 3.608869e-03	ci right 4.054133e-03	k: 1148	n:300000
KS ci ratio: 1.713731e-02	ci left: 1.472326e-01	ci right 1.497809e-01	k: 44551	n:300000
RASSF6   300000 perm   99 sec   (3019 perm/sec)   p_kst 1.485033e-01   p_cons 3.826667e-03   p_joint 5.520000e-03

Joint ci ratio: 9.467288e-02	ci left: 5.239523e-03	ci right 5.763335e-03	k: 1704	n:310000
Cons ci ratio: 1.135604e-01	ci left: 3.611525e-03	ci right 4.049444e-03	k: 1186	n:310000
KS ci ratio: 1.684877e-02	ci left: 1.474010e-01	ci right 1.499088e-01	k: 46082	n:310000
RASSF6   310000 perm   104 sec   (2979 perm/sec)   p_kst 1.486516e-01   p_cons 3.825806e-03   p_joint 5.496774e-03

Joint ci ratio: 9.331525e-02	ci left: 5.228363e-03	ci right 5.743155e-03	k: 1754	n:320000
Cons ci ratio: 1.116481e-01	ci left: 3.623182e-03	ci right 4.054630e-03	k: 1227	n:320000
KS ci ratio: 1.660732e-02	ci left: 1.470578e-01	ci right 1.495236e-01	k: 47452	n:320000
RASSF6   320000 perm   109 sec   (2940 perm/sec)   p_kst 1.482875e-01   p_cons 3.834375e-03   p_joint 5.481250e-03

Joint ci ratio: 7.054616e-02	ci left: 8.942554e-03	ci right 9.599440e-03	k: 3058	n:330000
Cons ci ratio: 1.102223e-01	ci left: 3.607666e-03	ci right 4.031424e-03	k: 1259	n:330000
KS ci ratio: 1.635158e-02	ci left: 1.471102e-01	ci right 1.495385e-01	k: 48946	n:330000
RASSF6   330000 perm   114 sec   (2903 perm/sec)   p_kst 1.483212e-01   p_cons 3.815152e-03   p_joint 9.266667e-03

Joint ci ratio: 6.945314e-02	ci left: 8.959841e-03	ci right 9.607388e-03	k: 3155	n:340000
Cons ci ratio: 1.084712e-01	ci left: 3.618849e-03	ci right 4.036736e-03	k: 1300	n:340000
KS ci ratio: 1.611031e-02	ci left: 1.471128e-01	ci right 1.495050e-01	k: 50424	n:340000
RASSF6   340000 perm   119 sec   (2865 perm/sec)   p_kst 1.483059e-01   p_cons 3.823529e-03   p_joint 9.279412e-03

Joint ci ratio: 6.835639e-02	ci left: 8.990257e-03	ci right 9.629335e-03	k: 3257	n:350000
Cons ci ratio: 1.069611e-01	ci left: 3.618320e-03	ci right 4.029962e-03	k: 1337	n:350000
KS ci ratio: 1.587779e-02	ci left: 1.471412e-01	ci right 1.494989e-01	k: 51911	n:350000
RASSF6   350000 perm   124 sec   (2828 perm/sec)   p_kst 1.483171e-01   p_cons 3.820000e-03   p_joint 9.305714e-03

Joint ci ratio: 6.320379e-02	ci left: 1.023795e-02	ci right 1.090886e-02	k: 3805	n:360000
Cons ci ratio: 1.056280e-01	ci left: 3.609744e-03	ci right 4.014974e-03	k: 1371	n:360000
KS ci ratio: 1.565661e-02	ci left: 1.471433e-01	ci right 1.494679e-01	k: 53389	n:360000
RASSF6   360000 perm   129 sec   (2793 perm/sec)   p_kst 1.483028e-01   p_cons 3.808333e-03   p_joint 1.056944e-02

Joint ci ratio: 6.237384e-02	ci left: 1.023259e-02	ci right 1.089403e-02	k: 3907	n:370000
Cons ci ratio: 1.043809e-01	ci left: 3.599029e-03	ci right 3.997994e-03	k: 1404	n:370000
KS ci ratio: 1.545086e-02	ci left: 1.470404e-01	ci right 1.493327e-01	k: 54828	n:370000
RASSF6   370000 perm   134 sec   (2759 perm/sec)   p_kst 1.481838e-01   p_cons 3.794595e-03   p_joint 1.055946e-02

Joint ci ratio: 6.149056e-02	ci left: 1.025608e-02	ci right 1.090931e-02	k: 4020	n:380000
Cons ci ratio: 1.028187e-01	ci left: 3.614545e-03	ci right 4.008870e-03	k: 1447	n:380000
KS ci ratio: 1.524444e-02	ci left: 1.470848e-01	ci right 1.493469e-01	k: 56321	n:380000
RASSF6   380000 perm   139 sec   (2726 perm/sec)   p_kst 1.482132e-01   p_cons 3.807895e-03   p_joint 1.057895e-02

Joint ci ratio: 6.068830e-02	ci left: 1.026327e-02	ci right 1.090813e-02	k: 4127	n:390000
Cons ci ratio: 1.012905e-01	ci left: 3.631807e-03	ci right 4.021776e-03	k: 1491	n:390000
KS ci ratio: 1.504791e-02	ci left: 1.470965e-01	ci right 1.493293e-01	k: 57802	n:390000
RASSF6   390000 perm   145 sec   (2695 perm/sec)   p_kst 1.482103e-01   p_cons 3.823077e-03   p_joint 1.058205e-02

Joint ci ratio: 5.990236e-02	ci left: 1.027508e-02	ci right 1.091204e-02	k: 4236	n:400000
Cons ci ratio: 1.001234e-01	ci left: 3.626307e-03	ci right 4.010936e-03	k: 1526	n:400000
KS ci ratio: 1.485731e-02	ci left: 1.471326e-01	ci right 1.493375e-01	k: 59293	n:400000
RASSF6   400000 perm   150 sec   (2662 perm/sec)   p_kst 1.482325e-01   p_cons 3.815000e-03   p_joint 1.059000e-02

Joint ci ratio: 5.918059e-02	ci left: 1.027435e-02	ci right 1.090332e-02	k: 4340	n:410000
Cons ci ratio: 9.902749e-02	ci left: 3.618721e-03	ci right 3.998100e-03	k: 1560	n:410000
KS ci ratio: 1.467662e-02	ci left: 1.471186e-01	ci right 1.492961e-01	k: 60764	n:410000
RASSF6   410000 perm   156 sec   (2632 perm/sec)   p_kst 1.482049e-01   p_cons 3.804878e-03   p_joint 1.058537e-02

Outputting figure to mutsig2_images.part000000000144/RASSF6.3_1154_410000_0.1482_0.0038049_0.010585.png
                gene_name: RASSF6
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 50 percent done.
RB1CC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
RB1CC1   10000 perm   2 sec   (4197 perm/sec)   p_kst 2.391000e-01   p_cons 3.808000e-01   p_joint 3.190000e-01

Outputting figure to mutsig2_images.part000000000144/RB1CC1.3_4873_10000_0.2391_0.3808_0.319.png
                gene_name: RB1CC1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 52 percent done.
RBBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
KS ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
RBBP5   10000 perm   2 sec   (5587 perm/sec)   p_kst 2.471000e-01   p_cons 2.853000e-01   p_joint 2.989000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP5.3_1673_10000_0.2471_0.2853_0.2989.png
                gene_name: RBBP5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 54 percent done.
RBBP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
Cons ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
KS ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
RBBP8   10000 perm   2 sec   (5085 perm/sec)   p_kst 3.068000e-01   p_cons 1.562000e-01   p_joint 1.267000e-01

Joint ci ratio: 6.541894e-02	ci left: 1.471981e-01	ci right 1.572032e-01	k: 3043	n:20000
Cons ci ratio: 6.466887e-02	ci left: 1.501578e-01	ci right 1.602427e-01	k: 3103	n:20000
KS ci ratio: 4.210498e-02	ci left: 2.959393e-01	ci right 3.087182e-01	k: 6046	n:20000
RBBP8   20000 perm   4 sec   (4486 perm/sec)   p_kst 3.023000e-01   p_cons 1.551500e-01   p_joint 1.521500e-01

Outputting figure to mutsig2_images.part000000000144/RBBP8.3_2773_20000_0.3023_0.15515_0.15215.png
                gene_name: RBBP8
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 56 percent done.
RBM14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278862e-02	ci left: 7.387626e-01	ci right 7.558931e-01	k: 7474	n:10000
Cons ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
KS ci ratio: 3.615328e-02	ci left: 5.304715e-01	ci right 5.501050e-01	k: 5403	n:10000
RBM14   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.403000e-01   p_cons 3.406000e-01   p_joint 7.474000e-01

Outputting figure to mutsig2_images.part000000000144/RBM14.3_2022_10000_0.5403_0.3406_0.7474.png
                gene_name: RBM14
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 58 percent done.
RBM15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
Cons ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
RBM15B   10000 perm   2 sec   (5114 perm/sec)   p_kst 5.635000e-01   p_cons 2.959000e-01   p_joint 5.999000e-01

Outputting figure to mutsig2_images.part000000000144/RBM15B.3_2677_10000_0.5635_0.2959_0.5999.png
                gene_name: RBM15B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 60 percent done.
RBM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949518e-03	ci left: 9.817751e-01	ci right 9.867370e-01	k: 9844	n:10000
Cons ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
KS ci ratio: 7.430354e-03	ci left: 9.616297e-01	ci right 9.688960e-01	k: 9654	n:10000
RBM17   10000 perm   2 sec   (6170 perm/sec)   p_kst 9.654000e-01   p_cons 8.079000e-01   p_joint 9.844000e-01

Outputting figure to mutsig2_images.part000000000144/RBM17.3_1250_10000_0.9654_0.8079_0.9844.png
                gene_name: RBM17
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 62 percent done.
RBM41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
KS ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
RBM41   10000 perm   2 sec   (6167 perm/sec)   p_kst 1.206000e-01   p_cons 9.565000e-01   p_joint 2.158000e-01

Joint ci ratio: 6.179443e-02	ci left: 1.622990e-01	ci right 1.726979e-01	k: 3349	n:20000
Cons ci ratio: 5.938768e-03	ci left: 9.532201e-01	ci right 9.589463e-01	k: 19123	n:20000
KS ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
RBM41   20000 perm   4 sec   (5377 perm/sec)   p_kst 1.187500e-01   p_cons 9.561500e-01   p_joint 1.674500e-01

Outputting figure to mutsig2_images.part000000000144/RBM41.3_1279_20000_0.11875_0.95615_0.16745.png
                gene_name: RBM41
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 63 percent done.
RBM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
Cons ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
KS ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
RBM42   10000 perm   2 sec   (6041 perm/sec)   p_kst 4.920000e-02   p_cons 6.203000e-01   p_joint 1.552000e-01

Joint ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
Cons ci ratio: 2.169929e-02	ci left: 6.132310e-01	ci right 6.267341e-01	k: 12400	n:20000
KS ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
RBM42   20000 perm   4 sec   (5306 perm/sec)   p_kst 5.195000e-02   p_cons 6.200000e-01   p_joint 1.476500e-01

Joint ci ratio: 5.057007e-02	ci left: 1.626302e-01	ci right 1.711011e-01	k: 5005	n:30000
Cons ci ratio: 1.706332e-02	ci left: 6.320973e-01	ci right 6.430094e-01	k: 19127	n:30000
KS ci ratio: 9.643665e-02	ci left: 4.967724e-02	ci right 5.474326e-02	k: 1565	n:30000
RBM42   30000 perm   6 sec   (4927 perm/sec)   p_kst 5.216667e-02   p_cons 6.375667e-01   p_joint 1.668333e-01

Outputting figure to mutsig2_images.part000000000144/RBM42.3_1483_30000_0.052167_0.63757_0.16683.png
                gene_name: RBM42
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 65 percent done.
RBM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.645772e-02	ci left: 6.778079e-01	ci right 6.960831e-01	k: 6870	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
RBM5   10000 perm   2 sec   (5098 perm/sec)   p_kst 5.372000e-01   p_cons 1.990000e-01   p_joint 6.870000e-01

Outputting figure to mutsig2_images.part000000000144/RBM5.3_2544_10000_0.5372_0.199_0.687.png
                gene_name: RBM5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 67 percent done.
RBMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
Cons ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
RBMS2   10000 perm   2 sec   (5836 perm/sec)   p_kst 5.729000e-01   p_cons 5.659000e-01   p_joint 9.854000e-01

Outputting figure to mutsig2_images.part000000000144/RBMS2.3_1276_10000_0.5729_0.5659_0.9854.png
                gene_name: RBMS2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
RBPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
Cons ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
RBPJ   10000 perm   2 sec   (5743 perm/sec)   p_kst 7.866000e-01   p_cons 1.696000e-01   p_joint 5.282000e-01

Outputting figure to mutsig2_images.part000000000144/RBPJ.3_1610_10000_0.7866_0.1696_0.5282.png
                gene_name: RBPJ
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 71 percent done.
RASGRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
Cons ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
RASGRP1   10000 perm   2 sec   (5413 perm/sec)   p_kst 2.130000e-02   p_cons 2.692000e-01   p_joint 7.329000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.460876e-02	ci left: 2.722951e-01	ci right 2.847694e-01	k: 5570	n:20000
KS ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
RASGRP1   20000 perm   4 sec   (4892 perm/sec)   p_kst 1.990000e-02   p_cons 2.785000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 3.654569e-02	ci left: 2.721068e-01	ci right 2.822697e-01	k: 8315	n:30000
KS ci ratio: 1.614696e-01	ci left: 1.770919e-02	ci right 2.085155e-02	k: 577	n:30000
RASGRP1   30000 perm   6 sec   (4669 perm/sec)   p_kst 1.923333e-02   p_cons 2.771667e-01   p_joint 1

Joint ci ratio: 2.432840e-03	ci left: 9.836046e-01	ci right 9.860242e-01	k: 39394	n:40000
Cons ci ratio: 3.275961e-02	ci left: 2.592623e-01	ci right 2.679221e-01	k: 10543	n:40000
KS ci ratio: 1.402710e-01	ci left: 1.780527e-02	ci right 2.051517e-02	k: 765	n:40000
RASGRP1   40000 perm   9 sec   (4523 perm/sec)   p_kst 1.912500e-02   p_cons 2.635750e-01   p_joint 9.848500e-01

Joint ci ratio: 5.515988e-02	ci left: 8.920384e-02	ci right 9.428367e-02	k: 4586	n:50000
Cons ci ratio: 2.922282e-02	ci left: 2.607571e-01	ci right 2.685102e-01	k: 13231	n:50000
KS ci ratio: 1.261017e-01	ci left: 1.776317e-02	ci right 2.017313e-02	k: 947	n:50000
RASGRP1   50000 perm   11 sec   (4408 perm/sec)   p_kst 1.894000e-02   p_cons 2.646200e-01   p_joint 9.172000e-02

Joint ci ratio: 3.063387e-03	ci left: 9.631584e-01	ci right 9.661297e-01	k: 57880	n:60000
Cons ci ratio: 2.663948e-02	ci left: 2.616377e-01	ci right 2.687183e-01	k: 15910	n:60000
KS ci ratio: 1.146330e-01	ci left: 1.801975e-02	ci right 2.022711e-02	k: 1146	n:60000
RASGRP1   60000 perm   14 sec   (4300 perm/sec)   p_kst 1.910000e-02   p_cons 2.651667e-01   p_joint 9.646667e-01

Joint ci ratio: 2.815005e-03	ci left: 9.637866e-01	ci right 9.665175e-01	k: 67562	n:70000
Cons ci ratio: 2.457494e-02	ci left: 2.632985e-01	ci right 2.698638e-01	k: 18660	n:70000
KS ci ratio: 1.058946e-01	ci left: 1.818233e-02	ci right 2.022922e-02	k: 1343	n:70000
RASGRP1   70000 perm   17 sec   (4203 perm/sec)   p_kst 1.918571e-02   p_cons 2.665714e-01   p_joint 9.651714e-01

Joint ci ratio: 4.651089e-02	ci left: 7.965012e-02	ci right 8.345529e-02	k: 6523	n:80000
Cons ci ratio: 2.292828e-02	ci left: 2.645220e-01	ci right 2.706698e-01	k: 21407	n:80000
KS ci ratio: 9.915415e-02	ci left: 1.821151e-02	ci right 2.012358e-02	k: 1532	n:80000
RASGRP1   80000 perm   19 sec   (4114 perm/sec)   p_kst 1.915000e-02   p_cons 2.675875e-01   p_joint 8.153750e-02

Outputting figure to mutsig2_images.part000000000144/RASGRP1.2_2462_80000_0.01915_0.26759_0.081537.png
                gene_name: RASGRP1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.083 

Current progress: 73 percent done.
RASGRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
Cons ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
RASGRP4   10000 perm   2 sec   (5754 perm/sec)   p_kst 5.025000e-01   p_cons 8.782000e-01   p_joint 7.324000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRP4.2_2090_10000_0.5025_0.8782_0.7324.png
                gene_name: RASGRP4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 75 percent done.
RASL11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 1.248945e-02	ci left: 9.020630e-01	ci right 9.134982e-01	k: 9079	n:10000
RASL11B   10000 perm   1 sec   (6956 perm/sec)   p_kst 9.079000e-01   p_cons 4.188000e-01   p_joint 9.918000e-01

Outputting figure to mutsig2_images.part000000000144/RASL11B.2_763_10000_0.9079_0.4188_0.9918.png
                gene_name: RASL11B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 77 percent done.
RASL12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
KS ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
RASL12   10000 perm   2 sec   (6586 perm/sec)   p_kst 9.197000e-01   p_cons 5.737000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASL12.2_821_10000_0.9197_0.5737_1.png
                gene_name: RASL12
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RAVER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
RAVER1   10000 perm   2 sec   (5712 perm/sec)   p_kst 5.814000e-01   p_cons 2.401000e-01   p_joint 7.316000e-01

Outputting figure to mutsig2_images.part000000000144/RAVER1.2_2323_10000_0.5814_0.2401_0.7316.png
                gene_name: RAVER1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 81 percent done.
RBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
Cons ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
KS ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
RBL2   10000 perm   2 sec   (4943 perm/sec)   p_kst 8.600000e-02   p_cons 1.265000e-01   p_joint 2.616000e-01

Joint ci ratio: 5.726817e-02	ci left: 1.843362e-01	ci right 1.952541e-01	k: 3795	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
RBL2   20000 perm   5 sec   (4436 perm/sec)   p_kst 8.880000e-02   p_cons 1.146000e-01   p_joint 1.897500e-01

Outputting figure to mutsig2_images.part000000000144/RBL2.2_3508_20000_0.0888_0.1146_0.18975.png
                gene_name: RBL2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 83 percent done.
RBM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
Cons ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
KS ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
RBM11   10000 perm   2 sec   (6567 perm/sec)   p_kst 5.330000e-01   p_cons 5.537000e-01   p_joint 9.625000e-01

Outputting figure to mutsig2_images.part000000000144/RBM11.2_866_10000_0.533_0.5537_0.9625.png
                gene_name: RBM11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 85 percent done.
RBM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
RBM22   10000 perm   2 sec   (6194 perm/sec)   p_kst 6.123000e-01   p_cons 3.346000e-01   p_joint 9.901000e-01

Outputting figure to mutsig2_images.part000000000144/RBM22.2_1307_10000_0.6123_0.3346_0.9901.png
                gene_name: RBM22
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 87 percent done.
RBM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.348846e-02	ci left: 2.132945e-01	ci right 2.296681e-01	k: 2214	n:10000
Cons ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
RBM34   10000 perm   2 sec   (6268 perm/sec)   p_kst 8.780000e-02   p_cons 3.188000e-01   p_joint 2.214000e-01

Joint ci ratio: 3.500742e-02	ci left: 3.785474e-01	ci right 3.920860e-01	k: 7706	n:20000
Cons ci ratio: 3.829878e-02	ci left: 3.371159e-01	ci right 3.503296e-01	k: 6874	n:20000
KS ci ratio: 8.906518e-02	ci left: 8.435383e-02	ci right 9.226634e-02	k: 1765	n:20000
RBM34   20000 perm   4 sec   (5457 perm/sec)   p_kst 8.825000e-02   p_cons 3.437000e-01   p_joint 3.853000e-01

Outputting figure to mutsig2_images.part000000000144/RBM34.2_1358_20000_0.08825_0.3437_0.3853.png
                gene_name: RBM34
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 88 percent done.
RBM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 1.575394e-01	ci left: 5.369051e-02	ci right 6.296887e-02	k: 582	n:10000
RBM39   10000 perm   2 sec   (6088 perm/sec)   p_kst 5.820000e-02   p_cons 7.758000e-01   p_joint 8.185000e-01

Joint ci ratio: 1.390068e-02	ci left: 7.934282e-01	ci right 8.045847e-01	k: 15981	n:20000
Cons ci ratio: 1.421162e-02	ci left: 7.861562e-01	ci right 7.974588e-01	k: 15837	n:20000
KS ci ratio: 1.111972e-01	ci left: 5.523815e-02	ci right 6.179094e-02	k: 1169	n:20000
RBM39   20000 perm   4 sec   (5312 perm/sec)   p_kst 5.845000e-02   p_cons 7.918500e-01   p_joint 7.990500e-01

Joint ci ratio: 1.138806e-02	ci left: 7.933777e-01	ci right 8.024978e-01	k: 23939	n:30000
Cons ci ratio: 1.218992e-02	ci left: 7.703658e-01	ci right 7.798475e-01	k: 23254	n:30000
KS ci ratio: 8.973847e-02	ci left: 5.711026e-02	ci right 6.250871e-02	k: 1793	n:30000
RBM39   30000 perm   6 sec   (4954 perm/sec)   p_kst 5.976667e-02   p_cons 7.751333e-01   p_joint 7.979667e-01

Outputting figure to mutsig2_images.part000000000144/RBM39.2_1657_30000_0.059767_0.77513_0.79797.png
                gene_name: RBM39
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 90 percent done.
RBM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
KS ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
RBM7   10000 perm   2 sec   (6560 perm/sec)   p_kst 5.244000e-01   p_cons 3.679000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM7.2_821_10000_0.5244_0.3679_1.png
                gene_name: RBM7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
RBMX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
KS ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
RBMX   10000 perm   2 sec   (6334 perm/sec)   p_kst 1.446000e-01   p_cons 4.510000e-01   p_joint 3.394000e-01

Outputting figure to mutsig2_images.part000000000144/RBMX.2_1263_10000_0.1446_0.451_0.3394.png
                gene_name: RBMX
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 94 percent done.
RBMX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
Cons ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
RBMX2   10000 perm   1 sec   (6792 perm/sec)   p_kst 4.644000e-01   p_cons 2.031000e-01   p_joint 4.048000e-01

Outputting figure to mutsig2_images.part000000000144/RBMX2.2_993_10000_0.4644_0.2031_0.4048.png
                gene_name: RBMX2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 96 percent done.
RBMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
Cons ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
RBMXL2   10000 perm   2 sec   (6393 perm/sec)   p_kst 7.913000e-01   p_cons 1.015000e-01   p_joint 2.140000e-01

Joint ci ratio: 6.476770e-02	ci left: 1.497631e-01	ci right 1.598375e-01	k: 3095	n:20000
Cons ci ratio: 8.285527e-02	ci left: 9.646450e-02	ci right 1.048520e-01	k: 2012	n:20000
KS ci ratio: 1.421593e-02	ci left: 7.860552e-01	ci right 7.973598e-01	k: 15835	n:20000
RBMXL2   20000 perm   4 sec   (5612 perm/sec)   p_kst 7.917500e-01   p_cons 1.006000e-01   p_joint 1.547500e-01

Outputting figure to mutsig2_images.part000000000144/RBMXL2.2_1183_20000_0.79175_0.1006_0.15475.png
                gene_name: RBMXL2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
RBPJL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
Cons ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
RBPJL   10000 perm   2 sec   (5959 perm/sec)   p_kst 1.073000e-01   p_cons 5.950000e-02   p_joint 1.174000e-01

Joint ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
Cons ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
KS ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
RBPJL   20000 perm   4 sec   (5281 perm/sec)   p_kst 1.060500e-01   p_cons 5.975000e-02   p_joint 6.665000e-02

Joint ci ratio: 7.370270e-02	ci left: 8.298206e-02	ci right 8.936501e-02	k: 2584	n:30000
Cons ci ratio: 8.989847e-02	ci left: 5.691449e-02	ci right 6.230453e-02	k: 1787	n:30000
KS ci ratio: 6.606322e-02	ci left: 1.015528e-01	ci right 1.085239e-01	k: 3150	n:30000
RBPJL   30000 perm   6 sec   (5020 perm/sec)   p_kst 1.050000e-01   p_cons 5.956667e-02   p_joint 8.613333e-02

Outputting figure to mutsig2_images.part000000000144/RBPJL.2_1602_30000_0.105_0.059567_0.086133.png
                gene_name: RBPJL
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000144
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 144 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 4422370: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000145> was used as the working directory.
Started at Wed Oct 24 18:06:15 2012
Results reported at Wed Oct 24 18:16:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000145.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000145.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 145  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000145.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    648.02 sec.
    Max Memory :      5374 MB
    Max Swap   :      7900 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
145
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 145
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 145: processing genes 13029 - 13118
Calculating significance of each gene.
Using projection method.
13029	RBPMS2	6.285255e-01
13030	RBX1	1
13031	RC3H1	5.772889e-01
13032	RC3H2	8.347461e-01
13033	RCAN1	1
13034	RCAN2	1
13035	RCAN3	5.652341e-01
13036	RCBTB1	1
In gene RCBTB2 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1704    n = 1	mu =   5.35e-07
13037	RCBTB2	2.700200e-01
13038	RCC1	7.973348e-01
13039	RCC2	9.068232e-01
13040	RCCD1	1
13041	RCE1	6.650035e-01
13042	RCHY1	7.647533e-01
13043	RCL1	7.008790e-01
13044	RCN1	5.797376e-01
13045	RCN2	1
13046	RCN3	4.952390e-01
13047	RCOR1	6.815964e-01
13048	RCOR2	7.365122e-01
13049	RCOR3	4.394296e-01
13050	RCSD1	1.312282e-01
13051	RCVRN	7.317148e-01
13052	RD3	9.745947e-02
13053	RDBP	1
13054	RDH10	6.240093e-01
13055	RDH11	5.852484e-01
13056	RDH12	1
13057	RDH13	1
13058	RDH14	1
13059	RDH16	7.802177e-01
13060	RDH5	1
13061	RDH8	4.845537e-02
13062	RDM1	1
13063	RDX	1
13064	REC8	1
13065	RECK	5.376674e-01
13066	RECQL	7.465782e-01
13067	RECQL4	8.610092e-01
13068	RECQL5	1
13069	REEP1	5.969161e-01
13070	REEP2	1
13071	REEP3	6.623994e-01
13072	REEP4	8.654671e-01
13073	REEP5	1
13074	REEP6	5.424472e-01
13075	REG1A	4.230445e-02
13076	REG1B	1.466750e-07
13077	REG3A	4.103841e-09
13078	REG3G	2.902759e-03
13079	REG4	3.500161e-01
13080	REL	8.156480e-01
13081	RELA	1
13082	RELB	9.092585e-01
13083	RELL1	1
13084	RELL2	6.865101e-01
13085	RELN	1
13086	RELT	1
13087	REM1	8.651674e-02
13088	REM2	5.645079e-01
13089	REN	1
13090	RENBP	2.447386e-01
13091	REP15	7.545033e-01
13092	REPIN1	8.509052e-01
13093	REPS1	9.882744e-01
13094	REPS2	6.833084e-01
13095	RER1	6.018343e-01
13096	RERE	8.526345e-01
13097	RERG	5.013665e-01
13098	RERGL	1.713424e-03
13099	REST	4.285144e-01
13100	RET	1.964690e-01
13101	RETN	1
13102	RETNLB	1.749223e-01
13103	RETSAT	4.492868e-01
13104	REV1	9.934705e-01
13105	REV3L	9.877495e-01
13106	REXO1	9.938222e-01
13107	REXO2	1
13108	REXO4	7.847243e-01
13109	RFC1	9.513385e-01
13110	RFC2	5.436243e-01
13111	RFC3	8.039794e-01
13112	RFC4	8.529020e-01
13113	RFC5	6.579635e-01
13114	RFESD	7.484028e-02
13115	RFFL	7.890814e-01
13116	RFK	1
13117	RFNG	1
13118	RFPL1	1
Done

Running MutSig 2:
Scatter job 145: processing genes 13029 - 13118
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RELN
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
Cons ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
KS ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
RELN   10000 perm   4 sec   (2589 perm/sec)   p_kst 2.554000e-01   p_cons 1.523000e-01   p_joint 1.980000e-01

Outputting figure to mutsig2_images.part000000000145/RELN.49_10643_10000_0.2554_0.1523_0.198.png
                gene_name: RELN
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
REG3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
KS ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
REG3A   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.129000e-01   p_cons 5.400000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000145/REG3A.15_548_10000_0.3129_0.54_0.4799.png
                gene_name: REG3A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 5 percent done.
REG1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
KS ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
REG1B   10000 perm   2 sec   (5390 perm/sec)   p_kst 4.893000e-01   p_cons 4.560000e-02   p_joint 1.839000e-01

Joint ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
Cons ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
KS ci ratio: 2.815227e-02	ci left: 4.852479e-01	ci right 4.991544e-01	k: 9844	n:20000
REG1B   20000 perm   4 sec   (4903 perm/sec)   p_kst 4.922000e-01   p_cons 3.995000e-02   p_joint 9.840000e-02

Joint ci ratio: 6.377958e-02	ci left: 1.082552e-01	ci right 1.154202e-01	k: 3354	n:30000
Cons ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
KS ci ratio: 2.200600e-02	ci left: 5.083265e-01	ci right 5.196708e-01	k: 15420	n:30000
REG1B   30000 perm   6 sec   (4705 perm/sec)   p_kst 5.140000e-01   p_cons 4.386667e-02   p_joint 1.118000e-01

Joint ci ratio: 5.510554e-02	ci left: 1.091969e-01	ci right 1.154095e-01	k: 4491	n:40000
Cons ci ratio: 9.555328e-02	ci left: 3.844254e-02	ci right 4.232455e-02	k: 1614	n:40000
KS ci ratio: 1.958261e-02	ci left: 4.955127e-01	ci right 5.053372e-01	k: 20017	n:40000
REG1B   40000 perm   9 sec   (4560 perm/sec)   p_kst 5.004250e-01   p_cons 4.035000e-02   p_joint 1.122750e-01

Outputting figure to mutsig2_images.part000000000145/REG1B.14_521_40000_0.50043_0.04035_0.11227.png
                gene_name: REG1B
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 7 percent done.
REV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
Cons ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
KS ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
REV3L   10000 perm   3 sec   (3385 perm/sec)   p_kst 4.052000e-01   p_cons 2.713000e-01   p_joint 3.216000e-01

Outputting figure to mutsig2_images.part000000000145/REV3L.13_9521_10000_0.4052_0.2713_0.3216.png
                gene_name: REV3L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 9 percent done.
REG3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
Cons ci ratio: 3.556068e-02	ci left: 5.386835e-01	ci right 5.582883e-01	k: 5485	n:10000
KS ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
REG3G   10000 perm   2 sec   (5515 perm/sec)   p_kst 9.615000e-01   p_cons 5.485000e-01   p_joint 9.322000e-01

Outputting figure to mutsig2_images.part000000000145/REG3G.11_548_10000_0.9615_0.5485_0.9322.png
                gene_name: REG3G
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 12 percent done.
RET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
RET   10000 perm   2 sec   (4608 perm/sec)   p_kst 9.359000e-01   p_cons 1.387000e-01   p_joint 5.100000e-01

Outputting figure to mutsig2_images.part000000000145/RET.11_3457_10000_0.9359_0.1387_0.51.png
                gene_name: RET
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 14 percent done.
RC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
Cons ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
KS ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
RC3H1   10000 perm   2 sec   (4543 perm/sec)   p_kst 1.196000e-01   p_cons 6.461000e-01   p_joint 2.316000e-01

Joint ci ratio: 4.870446e-02	ci left: 2.386552e-01	ci right 2.506192e-01	k: 4892	n:20000
Cons ci ratio: 2.051813e-02	ci left: 6.393266e-01	ci right 6.526309e-01	k: 12920	n:20000
KS ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
RC3H1   20000 perm   5 sec   (4117 perm/sec)   p_kst 1.170000e-01   p_cons 6.460000e-01   p_joint 2.446000e-01

Outputting figure to mutsig2_images.part000000000145/RC3H1.10_3478_20000_0.117_0.646_0.2446.png
                gene_name: RC3H1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 16 percent done.
RERE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
RERE   10000 perm   2 sec   (4078 perm/sec)   p_kst 3.254000e-01   p_cons 1.279000e-01   p_joint 1.296000e-01

Joint ci ratio: 4.890294e-02	ci left: 2.371678e-01	ci right 2.491070e-01	k: 4862	n:20000
Cons ci ratio: 7.204010e-02	ci left: 1.242852e-01	ci right 1.336230e-01	k: 2578	n:20000
KS ci ratio: 3.972470e-02	ci left: 3.208969e-01	ci right 3.339533e-01	k: 6548	n:20000
RERE   20000 perm   5 sec   (3788 perm/sec)   p_kst 3.274000e-01   p_cons 1.289000e-01   p_joint 2.431000e-01

Outputting figure to mutsig2_images.part000000000145/RERE.10_4789_20000_0.3274_0.1289_0.2431.png
                gene_name: RERE
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 19 percent done.
REST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
Cons ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
KS ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
REST   10000 perm   2 sec   (5095 perm/sec)   p_kst 2.806000e-01   p_cons 3.832000e-01   p_joint 4.763000e-01

Outputting figure to mutsig2_images.part000000000145/REST.10_3306_10000_0.2806_0.3832_0.4763.png
                gene_name: REST
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 21 percent done.
REG1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
Cons ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
KS ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
REG1A   10000 perm   2 sec   (6219 perm/sec)   p_kst 7.143000e-01   p_cons 5.037000e-01   p_joint 8.016000e-01

Outputting figure to mutsig2_images.part000000000145/REG1A.9_521_10000_0.7143_0.5037_0.8016.png
                gene_name: REG1A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 23 percent done.
RC3H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
KS ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
RC3H2   10000 perm   2 sec   (5071 perm/sec)   p_kst 7.420000e-01   p_cons 6.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RC3H2.7_3734_10000_0.742_0.6231_1.png
                gene_name: RC3H2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
RECK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
Cons ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
RECK   10000 perm   2 sec   (4611 perm/sec)   p_kst 3.410000e-02   p_cons 4.110000e-02   p_joint 2.190000e-02

Joint ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
Cons ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
KS ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
RECK   20000 perm   5 sec   (4249 perm/sec)   p_kst 3.515000e-02   p_cons 3.475000e-02   p_joint 2.185000e-02

Joint ci ratio: 1.894727e-01	ci left: 1.273282e-02	ci right 1.542916e-02	k: 421	n:30000
Cons ci ratio: 1.186022e-01	ci left: 3.304597e-02	ci right 3.724468e-02	k: 1053	n:30000
KS ci ratio: 1.179083e-01	ci left: 3.343453e-02	ci right 3.765603e-02	k: 1065	n:30000
RECK   30000 perm   7 sec   (4099 perm/sec)   p_kst 3.550000e-02   p_cons 3.510000e-02   p_joint 1.403333e-02

Joint ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
Cons ci ratio: 1.028394e-01	ci left: 3.324469e-02	ci right 3.687321e-02	k: 1401	n:40000
KS ci ratio: 1.013140e-01	ci left: 3.424442e-02	ci right 3.792333e-02	k: 1442	n:40000
RECK   40000 perm   10 sec   (3990 perm/sec)   p_kst 3.605000e-02   p_cons 3.502500e-02   p_joint 1.890000e-02

Joint ci ratio: 1.171565e-01	ci left: 2.061553e-02	ci right 2.320039e-02	k: 1094	n:50000
Cons ci ratio: 9.439546e-02	ci left: 3.176404e-02	ci right 3.493044e-02	k: 1666	n:50000
KS ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
RECK   50000 perm   13 sec   (3891 perm/sec)   p_kst 3.596000e-02   p_cons 3.332000e-02   p_joint 2.188000e-02

Joint ci ratio: 1.289565e-01	ci left: 1.418779e-02	ci right 1.615951e-02	k: 909	n:60000
Cons ci ratio: 8.586950e-02	ci left: 3.212345e-02	ci right 3.502190e-02	k: 2013	n:60000
KS ci ratio: 8.253514e-02	ci left: 3.473589e-02	ci right 3.774252e-02	k: 2173	n:60000
RECK   60000 perm   16 sec   (3813 perm/sec)   p_kst 3.621667e-02   p_cons 3.355000e-02   p_joint 1.515000e-02

Joint ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
Cons ci ratio: 7.942404e-02	ci left: 3.229133e-02	ci right 3.497608e-02	k: 2353	n:70000
KS ci ratio: 7.620002e-02	ci left: 3.503874e-02	ci right 3.782843e-02	k: 2549	n:70000
RECK   70000 perm   19 sec   (3745 perm/sec)   p_kst 3.641429e-02   p_cons 3.361429e-02   p_joint 1.160000e-02

Joint ci ratio: 9.457063e-02	ci left: 2.002978e-02	ci right 2.203017e-02	k: 1681	n:80000
Cons ci ratio: 7.431283e-02	ci left: 3.236201e-02	ci right 3.487196e-02	k: 2688	n:80000
KS ci ratio: 7.149900e-02	ci left: 3.491624e-02	ci right 3.751753e-02	k: 2896	n:80000
RECK   80000 perm   22 sec   (3679 perm/sec)   p_kst 3.620000e-02   p_cons 3.360000e-02   p_joint 2.101250e-02

Outputting figure to mutsig2_images.part000000000145/RECK.7_3000_80000_0.0362_0.0336_0.021012.png
                gene_name: RECK
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 28 percent done.
RFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
Cons ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
RFC1   10000 perm   2 sec   (4895 perm/sec)   p_kst 3.626000e-01   p_cons 1.093000e-01   p_joint 2.533000e-01

Joint ci ratio: 5.139877e-02	ci left: 2.194757e-01	ci right 2.311043e-01	k: 4505	n:20000
Cons ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
KS ci ratio: 3.568189e-02	ci left: 3.695793e-01	ci right 3.830567e-01	k: 7526	n:20000
RFC1   20000 perm   4 sec   (4449 perm/sec)   p_kst 3.763000e-01   p_cons 1.076000e-01   p_joint 2.252500e-01

Outputting figure to mutsig2_images.part000000000145/RFC1.6_3544_20000_0.3763_0.1076_0.22525.png
                gene_name: RFC1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 30 percent done.
RCBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
KS ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
RCBTB2   10000 perm   2 sec   (5524 perm/sec)   p_kst 2.561000e-01   p_cons 2.768000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000145/RCBTB2.5_1704_10000_0.2561_0.2768_0.3482.png
                gene_name: RCBTB2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
RDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
KS ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
RDH8   10000 perm   2 sec   (5715 perm/sec)   p_kst 9.252000e-01   p_cons 7.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RDH8.5_960_10000_0.9252_0.7432_1.png
                gene_name: RDH8
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
REG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
REG4   10000 perm   1 sec   (7201 perm/sec)   p_kst 1.700000e-02   p_cons 1.170000e-02   p_joint 1.200000e-02

Joint ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
Cons ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
KS ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
REG4   20000 perm   3 sec   (6329 perm/sec)   p_kst 1.790000e-02   p_cons 1.100000e-02   p_joint 6.450000e-03

Joint ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
Cons ci ratio: 2.229420e-01	ci left: 9.062469e-03	ci right 1.136720e-02	k: 305	n:30000
KS ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
REG4   30000 perm   5 sec   (5995 perm/sec)   p_kst 1.810000e-02   p_cons 1.016667e-02   p_joint 4.966667e-03

Joint ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
Cons ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
KS ci ratio: 1.467515e-01	ci left: 1.623762e-02	ci right 1.883310e-02	k: 700	n:40000
REG4   40000 perm   7 sec   (5781 perm/sec)   p_kst 1.750000e-02   p_cons 1.022500e-02   p_joint 2.125000e-03

Joint ci ratio: 3.996951e-01	ci left: 1.537477e-03	ci right 2.322160e-03	k: 95	n:50000
Cons ci ratio: 1.723502e-01	ci left: 9.356953e-03	ci right 1.114060e-02	k: 511	n:50000
KS ci ratio: 1.302973e-01	ci left: 1.662037e-02	ci right 1.895610e-02	k: 888	n:50000
REG4   50000 perm   9 sec   (5606 perm/sec)   p_kst 1.776000e-02   p_cons 1.022000e-02   p_joint 1.900000e-03

Joint ci ratio: 3.651884e-01	ci left: 1.567514e-03	ci right 2.282044e-03	k: 114	n:60000
Cons ci ratio: 1.564867e-01	ci left: 9.539588e-03	ci right 1.117496e-02	k: 620	n:60000
KS ci ratio: 1.196201e-01	ci left: 1.653056e-02	ci right 1.864981e-02	k: 1054	n:60000
REG4   60000 perm   11 sec   (5458 perm/sec)   p_kst 1.756667e-02   p_cons 1.033333e-02   p_joint 1.900000e-03

Joint ci ratio: 1.913892e-01	ci left: 5.386891e-03	ci right 6.540353e-03	k: 416	n:70000
Cons ci ratio: 1.360033e-01	ci left: 1.093036e-02	ci right 1.253907e-02	k: 820	n:70000
KS ci ratio: 1.097898e-01	ci left: 1.690287e-02	ci right 1.888024e-02	k: 1251	n:70000
REG4   70000 perm   13 sec   (5327 perm/sec)   p_kst 1.787143e-02   p_cons 1.171429e-02   p_joint 5.942857e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 1.266936e-01	ci left: 1.107532e-02	ci right 1.258539e-02	k: 945	n:80000
KS ci ratio: 1.025480e-01	ci left: 1.701686e-02	ci right 1.886833e-02	k: 1434	n:80000
REG4   80000 perm   15 sec   (5205 perm/sec)   p_kst 1.792500e-02   p_cons 1.181250e-02   p_joint 4.925000e-03

Joint ci ratio: 1.960558e-01	ci left: 3.988641e-03	ci right 4.865995e-03	k: 397	n:90000
Cons ci ratio: 1.192356e-01	ci left: 1.115864e-02	ci right 1.258419e-02	k: 1067	n:90000
KS ci ratio: 9.651215e-02	ci left: 1.713056e-02	ci right 1.887848e-02	k: 1619	n:90000
REG4   90000 perm   18 sec   (5022 perm/sec)   p_kst 1.798889e-02   p_cons 1.185556e-02   p_joint 4.411111e-03

Joint ci ratio: 1.922573e-01	ci left: 3.741952e-03	ci right 4.547227e-03	k: 413	n:100000
Cons ci ratio: 1.133426e-01	ci left: 1.114962e-02	ci right 1.249892e-02	k: 1181	n:100000
KS ci ratio: 9.202920e-02	ci left: 1.699926e-02	ci right 1.864887e-02	k: 1781	n:100000
REG4   100000 perm   20 sec   (4915 perm/sec)   p_kst 1.781000e-02   p_cons 1.181000e-02   p_joint 4.130000e-03

Joint ci ratio: 1.934700e-01	ci left: 3.358449e-03	ci right 4.086284e-03	k: 408	n:110000
Cons ci ratio: 1.086701e-01	ci left: 1.105520e-02	ci right 1.233438e-02	k: 1285	n:110000
KS ci ratio: 8.770545e-02	ci left: 1.705349e-02	ci right 1.862662e-02	k: 1961	n:110000
REG4   110000 perm   23 sec   (4818 perm/sec)   p_kst 1.782727e-02   p_cons 1.168182e-02   p_joint 3.709091e-03

Joint ci ratio: 1.886994e-01	ci left: 3.245189e-03	ci right 3.929147e-03	k: 429	n:120000
Cons ci ratio: 1.042284e-01	ci left: 1.104242e-02	ci right 1.226469e-02	k: 1397	n:120000
KS ci ratio: 8.354271e-02	ci left: 1.726343e-02	ci right 1.877665e-02	k: 2161	n:120000
REG4   120000 perm   25 sec   (4724 perm/sec)   p_kst 1.800833e-02   p_cons 1.164167e-02   p_joint 3.575000e-03

Joint ci ratio: 1.874182e-01	ci left: 3.039509e-03	ci right 3.675271e-03	k: 435	n:130000
Cons ci ratio: 9.998925e-02	ci left: 1.110002e-02	ci right 1.227576e-02	k: 1518	n:130000
KS ci ratio: 8.051358e-02	ci left: 1.718618e-02	ci right 1.863544e-02	k: 2327	n:130000
REG4   130000 perm   28 sec   (4635 perm/sec)   p_kst 1.790000e-02   p_cons 1.167692e-02   p_joint 3.346154e-03

Joint ci ratio: 1.853208e-01	ci left: 2.890476e-03	ci right 3.487537e-03	k: 445	n:140000
Cons ci ratio: 9.590362e-02	ci left: 1.122696e-02	ci right 1.236482e-02	k: 1650	n:140000
KS ci ratio: 7.775994e-02	ci left: 1.713483e-02	ci right 1.852810e-02	k: 2495	n:140000
REG4   140000 perm   31 sec   (4551 perm/sec)   p_kst 1.782143e-02   p_cons 1.178571e-02   p_joint 3.178571e-03

Joint ci ratio: 1.799568e-01	ci left: 2.869546e-03	ci right 3.443258e-03	k: 472	n:150000
Cons ci ratio: 9.257043e-02	ci left: 1.126616e-02	ci right 1.236616e-02	k: 1771	n:150000
KS ci ratio: 7.515597e-02	ci left: 1.714341e-02	ci right 1.848865e-02	k: 2671	n:150000
REG4   150000 perm   34 sec   (4471 perm/sec)   p_kst 1.780667e-02   p_cons 1.180667e-02   p_joint 3.146667e-03

Joint ci ratio: 1.489093e-01	ci left: 3.991286e-03	ci right 4.639378e-03	k: 689	n:160000
Cons ci ratio: 8.922894e-02	ci left: 1.138663e-02	ci right 1.245617e-02	k: 1906	n:160000
KS ci ratio: 7.287540e-02	ci left: 1.711477e-02	ci right 1.841529e-02	k: 2841	n:160000
REG4   160000 perm   36 sec   (4390 perm/sec)   p_kst 1.775625e-02   p_cons 1.191250e-02   p_joint 4.306250e-03

Joint ci ratio: 1.376622e-01	ci left: 4.420166e-03	ci right 5.079251e-03	k: 806	n:170000
Cons ci ratio: 8.687314e-02	ci left: 1.132086e-02	ci right 1.235471e-02	k: 2011	n:170000
KS ci ratio: 7.059993e-02	ci left: 1.718253e-02	ci right 1.844575e-02	k: 3027	n:170000
REG4   170000 perm   39 sec   (4310 perm/sec)   p_kst 1.780588e-02   p_cons 1.182941e-02   p_joint 4.741176e-03

Joint ci ratio: 1.390722e-01	ci left: 4.088741e-03	ci right 4.705167e-03	k: 790	n:180000
Cons ci ratio: 8.473505e-02	ci left: 1.125185e-02	ci right 1.225286e-02	k: 2114	n:180000
KS ci ratio: 6.867755e-02	ci left: 1.716686e-02	ci right 1.839319e-02	k: 3199	n:180000
REG4   180000 perm   42 sec   (4238 perm/sec)   p_kst 1.777222e-02   p_cons 1.174444e-02   p_joint 4.388889e-03

Joint ci ratio: 1.533731e-01	ci left: 3.163475e-03	ci right 3.693959e-03	k: 650	n:190000
Cons ci ratio: 8.267201e-02	ci left: 1.121100e-02	ci right 1.218293e-02	k: 2221	n:190000
KS ci ratio: 6.678323e-02	ci left: 1.721537e-02	ci right 1.840993e-02	k: 3383	n:190000
REG4   190000 perm   46 sec   (4166 perm/sec)   p_kst 1.780526e-02   p_cons 1.168947e-02   p_joint 3.421053e-03

Joint ci ratio: 1.529157e-01	ci left: 3.024518e-03	ci right 3.530048e-03	k: 654	n:200000
Cons ci ratio: 8.098163e-02	ci left: 1.111081e-02	ci right 1.205342e-02	k: 2315	n:200000
KS ci ratio: 6.509323e-02	ci left: 1.722993e-02	ci right 1.839411e-02	k: 3561	n:200000
REG4   200000 perm   49 sec   (4098 perm/sec)   p_kst 1.780500e-02   p_cons 1.157500e-02   p_joint 3.270000e-03

Joint ci ratio: 1.517698e-01	ci left: 2.926286e-03	ci right 3.411398e-03	k: 664	n:210000
Cons ci ratio: 7.914201e-02	ci left: 1.109038e-02	ci right 1.200889e-02	k: 2424	n:210000
KS ci ratio: 6.340464e-02	ci left: 1.730908e-02	ci right 1.844714e-02	k: 3753	n:210000
REG4   210000 perm   52 sec   (4032 perm/sec)   p_kst 1.787143e-02   p_cons 1.154286e-02   p_joint 3.161905e-03

Joint ci ratio: 1.523564e-01	ci left: 2.771394e-03	ci right 3.232764e-03	k: 659	n:220000
Cons ci ratio: 7.736057e-02	ci left: 1.108985e-02	ci right 1.198672e-02	k: 2537	n:220000
KS ci ratio: 6.195299e-02	ci left: 1.731871e-02	ci right 1.843041e-02	k: 3931	n:220000
REG4   220000 perm   55 sec   (3968 perm/sec)   p_kst 1.786818e-02   p_cons 1.153182e-02   p_joint 2.995455e-03

Joint ci ratio: 1.543731e-01	ci left: 2.579802e-03	ci right 3.015487e-03	k: 642	n:230000
Cons ci ratio: 7.585362e-02	ci left: 1.104266e-02	ci right 1.191754e-02	k: 2639	n:230000
KS ci ratio: 6.073979e-02	ci left: 1.724640e-02	ci right 1.833101e-02	k: 4090	n:230000
REG4   230000 perm   59 sec   (3906 perm/sec)   p_kst 1.778261e-02   p_cons 1.147391e-02   p_joint 2.791304e-03

Joint ci ratio: 1.508926e-01	ci left: 2.592537e-03	ci right 3.019611e-03	k: 672	n:240000
Cons ci ratio: 7.436286e-02	ci left: 1.102000e-02	ci right 1.187519e-02	k: 2746	n:240000
KS ci ratio: 5.945290e-02	ci left: 1.726243e-02	ci right 1.832426e-02	k: 4269	n:240000
REG4   240000 perm   62 sec   (3847 perm/sec)   p_kst 1.778750e-02   p_cons 1.144167e-02   p_joint 2.800000e-03

Joint ci ratio: 1.494605e-01	ci left: 2.538877e-03	ci right 2.952786e-03	k: 685	n:250000
Cons ci ratio: 7.282772e-02	ci left: 1.103859e-02	ci right 1.187679e-02	k: 2863	n:250000
KS ci ratio: 5.817796e-02	ci left: 1.731683e-02	ci right 1.835839e-02	k: 4458	n:250000
REG4   250000 perm   66 sec   (3790 perm/sec)   p_kst 1.783200e-02   p_cons 1.145200e-02   p_joint 2.740000e-03

Joint ci ratio: 1.456843e-01	ci left: 2.574580e-03	ci right 2.982783e-03	k: 721	n:260000
Cons ci ratio: 7.108297e-02	ci left: 1.115038e-02	ci right 1.197595e-02	k: 3005	n:260000
KS ci ratio: 5.704418e-02	ci left: 1.732934e-02	ci right 1.835068e-02	k: 4637	n:260000
REG4   260000 perm   70 sec   (3734 perm/sec)   p_kst 1.783462e-02   p_cons 1.155769e-02   p_joint 2.773077e-03

Joint ci ratio: 1.430346e-01	ci left: 2.575614e-03	ci right 2.975919e-03	k: 748	n:270000
Cons ci ratio: 6.990861e-02	ci left: 1.110851e-02	ci right 1.191684e-02	k: 3107	n:270000
KS ci ratio: 5.601566e-02	ci left: 1.731554e-02	ci right 1.831707e-02	k: 4809	n:270000
REG4   270000 perm   73 sec   (3680 perm/sec)   p_kst 1.781111e-02   p_cons 1.150741e-02   p_joint 2.770370e-03

Joint ci ratio: 1.444998e-01	ci left: 2.431970e-03	ci right 2.814155e-03	k: 733	n:280000
Cons ci ratio: 6.889923e-02	ci left: 1.103463e-02	ci right 1.182553e-02	k: 3199	n:280000
KS ci ratio: 5.502397e-02	ci left: 1.731345e-02	ci right 1.829656e-02	k: 4984	n:280000
REG4   280000 perm   77 sec   (3631 perm/sec)   p_kst 1.780000e-02   p_cons 1.142500e-02   p_joint 2.617857e-03

Joint ci ratio: 1.469345e-01	ci left: 2.268353e-03	ci right 2.631359e-03	k: 709	n:290000
Cons ci ratio: 6.783857e-02	ci left: 1.099644e-02	ci right 1.177199e-02	k: 3300	n:290000
KS ci ratio: 5.403519e-02	ci left: 1.734228e-02	ci right 1.830877e-02	k: 5168	n:290000
REG4   290000 perm   81 sec   (3581 perm/sec)   p_kst 1.782069e-02   p_cons 1.137931e-02   p_joint 2.444828e-03

Joint ci ratio: 1.460158e-01	ci left: 2.221638e-03	ci right 2.574751e-03	k: 718	n:300000
Cons ci ratio: 6.657842e-02	ci left: 1.104285e-02	ci right 1.180664e-02	k: 3426	n:300000
KS ci ratio: 5.314844e-02	ci left: 1.733643e-02	ci right 1.828625e-02	k: 5342	n:300000
REG4   300000 perm   85 sec   (3533 perm/sec)   p_kst 1.780667e-02   p_cons 1.142000e-02   p_joint 2.393333e-03

Joint ci ratio: 1.444196e-01	ci left: 2.199708e-03	ci right 2.545184e-03	k: 734	n:310000
Cons ci ratio: 6.549796e-02	ci left: 1.104830e-02	ci right 1.179959e-02	k: 3540	n:310000
KS ci ratio: 5.233778e-02	ci left: 1.730879e-02	ci right 1.824220e-02	k: 5509	n:310000
REG4   310000 perm   89 sec   (3486 perm/sec)   p_kst 1.777097e-02   p_cons 1.141935e-02   p_joint 2.367742e-03

Joint ci ratio: 1.456214e-01	ci left: 2.094820e-03	ci right 2.426797e-03	k: 722	n:320000
Cons ci ratio: 6.438830e-02	ci left: 1.108117e-02	ci right 1.182146e-02	k: 3663	n:320000
KS ci ratio: 5.151693e-02	ci left: 1.731383e-02	ci right 1.823243e-02	k: 5686	n:320000
REG4   320000 perm   93 sec   (3440 perm/sec)   p_kst 1.776875e-02   p_cons 1.144688e-02   p_joint 2.256250e-03

Joint ci ratio: 1.478988e-01	ci left: 1.967112e-03	ci right 2.284157e-03	k: 700	n:330000
Cons ci ratio: 6.346046e-02	ci left: 1.106742e-02	ci right 1.179574e-02	k: 3771	n:330000
KS ci ratio: 5.064129e-02	ci left: 1.738152e-02	ci right 1.828758e-02	k: 5884	n:330000
REG4   330000 perm   97 sec   (3395 perm/sec)   p_kst 1.783030e-02   p_cons 1.142727e-02   p_joint 2.121212e-03

Joint ci ratio: 1.481153e-01	ci left: 1.903586e-03	ci right 2.210882e-03	k: 698	n:340000
Cons ci ratio: 6.247395e-02	ci left: 1.108930e-02	ci right 1.180730e-02	k: 3891	n:340000
KS ci ratio: 4.989660e-02	ci left: 1.738434e-02	ci right 1.827684e-02	k: 6061	n:340000
REG4   340000 perm   101 sec   (3351 perm/sec)   p_kst 1.782647e-02   p_cons 1.144412e-02   p_joint 2.052941e-03

Joint ci ratio: 1.588386e-01	ci left: 1.599151e-03	ci right 1.877774e-03	k: 607	n:350000
Cons ci ratio: 6.159422e-02	ci left: 1.108749e-02	ci right 1.179492e-02	k: 4003	n:350000
KS ci ratio: 4.919988e-02	ci left: 1.737581e-02	ci right 1.825506e-02	k: 6234	n:350000
REG4   350000 perm   106 sec   (3308 perm/sec)   p_kst 1.781143e-02   p_cons 1.143714e-02   p_joint 1.734286e-03

Joint ci ratio: 1.630607e-01	ci left: 1.472078e-03	ci right 1.736048e-03	k: 576	n:360000
Cons ci ratio: 6.067611e-02	ci left: 1.111322e-02	ci right 1.181134e-02	k: 4125	n:360000
KS ci ratio: 4.854312e-02	ci left: 1.735959e-02	ci right 1.822597e-02	k: 6404	n:360000
REG4   360000 perm   110 sec   (3266 perm/sec)   p_kst 1.778889e-02   p_cons 1.145833e-02   p_joint 1.600000e-03

Joint ci ratio: 1.609819e-01	ci left: 1.471189e-03	ci right 1.731311e-03	k: 591	n:370000
Cons ci ratio: 5.984777e-02	ci left: 1.111899e-02	ci right 1.180761e-02	k: 4240	n:370000
KS ci ratio: 4.794169e-02	ci left: 1.732296e-02	ci right 1.817651e-02	k: 6566	n:370000
REG4   370000 perm   115 sec   (3227 perm/sec)   p_kst 1.774595e-02   p_cons 1.145946e-02   p_joint 1.597297e-03

Joint ci ratio: 1.592435e-01	ci left: 1.465313e-03	ci right 1.721331e-03	k: 604	n:380000
Cons ci ratio: 5.905246e-02	ci left: 1.112452e-02	ci right 1.180401e-02	k: 4355	n:380000
KS ci ratio: 4.719809e-02	ci left: 1.740797e-02	ci right 1.825204e-02	k: 6774	n:380000
REG4   380000 perm   119 sec   (3190 perm/sec)   p_kst 1.782632e-02   p_cons 1.146053e-02   p_joint 1.589474e-03

Joint ci ratio: 1.569258e-01	ci left: 1.472070e-03	ci right 1.725172e-03	k: 622	n:390000
Cons ci ratio: 5.822220e-02	ci left: 1.115509e-02	ci right 1.182655e-02	k: 4480	n:390000
KS ci ratio: 4.658323e-02	ci left: 1.741774e-02	ci right 1.825098e-02	k: 6954	n:390000
REG4   390000 perm   124 sec   (3154 perm/sec)   p_kst 1.783077e-02   p_cons 1.148718e-02   p_joint 1.594872e-03

Joint ci ratio: 1.248747e-01	ci left: 2.304005e-03	ci right 2.613273e-03	k: 982	n:400000
Cons ci ratio: 5.742601e-02	ci left: 1.118420e-02	ci right 1.184790e-02	k: 4605	n:400000
KS ci ratio: 4.606744e-02	ci left: 1.737024e-02	ci right 1.819177e-02	k: 7111	n:400000
REG4   400000 perm   128 sec   (3118 perm/sec)   p_kst 1.777750e-02   p_cons 1.151250e-02   p_joint 2.455000e-03

Joint ci ratio: 1.235624e-01	ci left: 2.297437e-03	ci right 2.602345e-03	k: 1003	n:410000
Cons ci ratio: 5.665554e-02	ci left: 1.121436e-02	ci right 1.187062e-02	k: 4731	n:410000
KS ci ratio: 4.551107e-02	ci left: 1.736852e-02	ci right 1.817978e-02	k: 7286	n:410000
REG4   410000 perm   133 sec   (3084 perm/sec)   p_kst 1.777073e-02   p_cons 1.153902e-02   p_joint 2.446341e-03

Joint ci ratio: 1.036304e-01	ci left: 3.219240e-03	ci right 3.573380e-03	k: 1425	n:420000
Cons ci ratio: 5.600867e-02	ci left: 1.120556e-02	ci right 1.185358e-02	k: 4841	n:420000
KS ci ratio: 4.491621e-02	ci left: 1.741167e-02	ci right 1.821405e-02	k: 7480	n:420000
REG4   420000 perm   138 sec   (3052 perm/sec)   p_kst 1.780952e-02   p_cons 1.152619e-02   p_joint 3.392857e-03

Joint ci ratio: 1.022762e-01	ci left: 3.230471e-03	ci right 3.580924e-03	k: 1463	n:430000
Cons ci ratio: 5.539477e-02	ci left: 1.119263e-02	ci right 1.183258e-02	k: 4949	n:430000
KS ci ratio: 4.436762e-02	ci left: 1.743449e-02	ci right 1.822785e-02	k: 7666	n:430000
REG4   430000 perm   142 sec   (3020 perm/sec)   p_kst 1.782791e-02   p_cons 1.150930e-02   p_joint 3.402326e-03

Joint ci ratio: 1.028812e-01	ci left: 3.119397e-03	ci right 3.459923e-03	k: 1446	n:440000
Cons ci ratio: 5.474044e-02	ci left: 1.120498e-02	ci right 1.183784e-02	k: 5068	n:440000
KS ci ratio: 4.389845e-02	ci left: 1.740910e-02	ci right 1.819272e-02	k: 7831	n:440000
REG4   440000 perm   147 sec   (2989 perm/sec)   p_kst 1.779773e-02   p_cons 1.151818e-02   p_joint 3.286364e-03

Joint ci ratio: 1.019700e-01	ci left: 3.106374e-03	ci right 3.442294e-03	k: 1472	n:450000
Cons ci ratio: 5.407187e-02	ci left: 1.123218e-02	ci right 1.185858e-02	k: 5194	n:450000
KS ci ratio: 4.338865e-02	ci left: 1.742886e-02	ci right 1.820403e-02	k: 8016	n:450000
REG4   450000 perm   152 sec   (2952 perm/sec)   p_kst 1.781333e-02   p_cons 1.154222e-02   p_joint 3.271111e-03

Joint ci ratio: 1.009138e-01	ci left: 3.104525e-03	ci right 3.436563e-03	k: 1503	n:460000
Cons ci ratio: 5.351887e-02	ci left: 1.121962e-02	ci right 1.183873e-02	k: 5302	n:460000
KS ci ratio: 4.290953e-02	ci left: 1.743706e-02	ci right 1.820381e-02	k: 8196	n:460000
REG4   460000 perm   158 sec   (2917 perm/sec)   p_kst 1.781739e-02   p_cons 1.152609e-02   p_joint 3.267391e-03

Joint ci ratio: 9.972696e-02	ci left: 3.113146e-03	ci right 3.441961e-03	k: 1539	n:470000
Cons ci ratio: 5.294291e-02	ci left: 1.122443e-02	ci right 1.183693e-02	k: 5418	n:470000
KS ci ratio: 4.246401e-02	ci left: 1.743021e-02	ci right 1.818851e-02	k: 8369	n:470000
REG4   470000 perm   163 sec   (2884 perm/sec)   p_kst 1.780638e-02   p_cons 1.152766e-02   p_joint 3.274468e-03

Outputting figure to mutsig2_images.part000000000145/REG4.5_737_470000_0.017806_0.011528_0.0032745.png
                gene_name: REG4
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 37 percent done.
REM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
REM1   10000 perm   2 sec   (5833 perm/sec)   p_kst 1.623000e-01   p_cons 6.466000e-01   p_joint 3.228000e-01

Outputting figure to mutsig2_images.part000000000145/REM1.5_913_10000_0.1623_0.6466_0.3228.png
                gene_name: REM1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 40 percent done.
RERGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
RERGL   10000 perm   2 sec   (6624 perm/sec)   p_kst 3.987000e-01   p_cons 1.069000e-01   p_joint 1.915000e-01

Joint ci ratio: 5.559287e-02	ci left: 1.935353e-01	ci right 2.046523e-01	k: 3981	n:20000
Cons ci ratio: 7.951437e-02	ci left: 1.040253e-01	ci right 1.126889e-01	k: 2166	n:20000
KS ci ratio: 3.385671e-02	ci left: 3.944467e-01	ci right 4.080820e-01	k: 8025	n:20000
RERGL   20000 perm   3 sec   (5847 perm/sec)   p_kst 4.012500e-01   p_cons 1.083000e-01   p_joint 1.990500e-01

Outputting figure to mutsig2_images.part000000000145/RERGL.5_638_20000_0.40125_0.1083_0.19905.png
                gene_name: RERGL
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 42 percent done.
RETSAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
Cons ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
RETSAT   10000 perm   2 sec   (5401 perm/sec)   p_kst 4.350000e-01   p_cons 9.272000e-01   p_joint 5.912000e-01

Outputting figure to mutsig2_images.part000000000145/RETSAT.5_1877_10000_0.435_0.9272_0.5912.png
                gene_name: RETSAT
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 44 percent done.
RCSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
Cons ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
KS ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
RCSD1   10000 perm   2 sec   (6216 perm/sec)   p_kst 2.104000e-01   p_cons 6.280000e-02   p_joint 1.617000e-01

Joint ci ratio: 6.671656e-02	ci left: 1.422669e-01	ci right 1.521359e-01	k: 2943	n:20000
Cons ci ratio: 1.067604e-01	ci left: 5.976897e-02	ci right 6.655871e-02	k: 1262	n:20000
KS ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
RCSD1   20000 perm   4 sec   (5522 perm/sec)   p_kst 2.090500e-01   p_cons 6.310000e-02   p_joint 1.471500e-01

Joint ci ratio: 6.308307e-02	ci left: 1.104245e-01	ci right 1.176504e-01	k: 3420	n:30000
Cons ci ratio: 8.792804e-02	ci left: 5.939490e-02	ci right 6.489027e-02	k: 1863	n:30000
KS ci ratio: 4.391816e-02	ci left: 2.052042e-01	ci right 2.144521e-01	k: 6294	n:30000
RCSD1   30000 perm   6 sec   (5272 perm/sec)   p_kst 2.098000e-01   p_cons 6.210000e-02   p_joint 1.140000e-01

Outputting figure to mutsig2_images.part000000000145/RCSD1.4_1279_30000_0.2098_0.0621_0.114.png
                gene_name: RCSD1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 47 percent done.
RECQL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
RECQL4   10000 perm   2 sec   (5070 perm/sec)   p_kst 7.266000e-01   p_cons 8.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RECQL4.4_3712_10000_0.7266_0.8836_1.png
                gene_name: RECQL4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
REPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
Cons ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
KS ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
REPS2   10000 perm   2 sec   (5929 perm/sec)   p_kst 9.200000e-01   p_cons 2.263000e-01   p_joint 6.981000e-01

Outputting figure to mutsig2_images.part000000000145/REPS2.4_2055_10000_0.92_0.2263_0.6981.png
                gene_name: REPS2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 51 percent done.
REV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
KS ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
REV1   10000 perm   2 sec   (5021 perm/sec)   p_kst 8.742000e-01   p_cons 8.381000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/REV1.4_3844_10000_0.8742_0.8381_1.png
                gene_name: REV1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
RCOR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
KS ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
RCOR3   10000 perm   2 sec   (6167 perm/sec)   p_kst 7.655000e-01   p_cons 8.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCOR3.3_1743_10000_0.7655_0.8579_1.png
                gene_name: RCOR3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
RD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
RD3   10000 perm   2 sec   (6511 perm/sec)   p_kst 4.992000e-01   p_cons 3.808000e-01   p_joint 5.879000e-01

Outputting figure to mutsig2_images.part000000000145/RD3.3_596_10000_0.4992_0.3808_0.5879.png
                gene_name: RD3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 58 percent done.
RDH16
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.872082e-02	ci left: 8.065373e-01	ci right 8.218792e-01	k: 8143	n:10000
KS ci ratio: 1.080951e-02	ci left: 9.242033e-01	ci right 9.343450e-01	k: 9294	n:10000
RDH16   10000 perm   1 sec   (6722 perm/sec)   p_kst 9.294000e-01   p_cons 8.143000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RDH16.2_970_10000_0.9294_0.8143_1.png
                gene_name: RDH16
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
RENBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
Cons ci ratio: 4.078604e-02	ci left: 4.702649e-01	ci right 4.899467e-01	k: 4801	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
RENBP   10000 perm   2 sec   (6300 perm/sec)   p_kst 9.820000e-02   p_cons 4.801000e-01   p_joint 2.097000e-01

Joint ci ratio: 5.158351e-02	ci left: 2.182373e-01	ci right 2.298430e-01	k: 4480	n:20000
Cons ci ratio: 2.946190e-02	ci left: 4.625632e-01	ci right 4.764456e-01	k: 9390	n:20000
KS ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
RENBP   20000 perm   4 sec   (5607 perm/sec)   p_kst 9.915000e-02   p_cons 4.695000e-01   p_joint 2.240000e-01

Outputting figure to mutsig2_images.part000000000145/RENBP.3_1328_20000_0.09915_0.4695_0.224.png
                gene_name: RENBP
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 63 percent done.
RCBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900648e-02	ci left: 4.925508e-01	ci right 5.122478e-01	k: 5024	n:10000
Cons ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KS ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
RCBTB1   10000 perm   2 sec   (6505 perm/sec)   p_kst 4.090000e-01   p_cons 2.138000e-01   p_joint 5.024000e-01

Outputting figure to mutsig2_images.part000000000145/RCBTB1.2_1640_10000_0.409_0.2138_0.5024.png
                gene_name: RCBTB1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 65 percent done.
RCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.634893e-03	ci left: 9.940977e-01	ci right 9.968012e-01	k: 9956	n:10000
KS ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
RCC1   10000 perm   1 sec   (6803 perm/sec)   p_kst 5.732000e-01   p_cons 9.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCC1.2_1399_10000_0.5732_0.9956_1.png
                gene_name: RCC1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
RCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
RCL1   10000 perm   1 sec   (6852 perm/sec)   p_kst 2.610000e-02   p_cons 7.180000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
KS ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
RCL1   20000 perm   3 sec   (6027 perm/sec)   p_kst 2.595000e-02   p_cons 7.315000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.009775e-02	ci left: 7.096438e-02	ci right 7.691845e-02	k: 2217	n:30000
KS ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
RCL1   30000 perm   5 sec   (5716 perm/sec)   p_kst 2.486667e-02   p_cons 7.390000e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 7.007741e-02	ci left: 7.000196e-02	ci right 7.511030e-02	k: 2901	n:40000
KS ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
RCL1   40000 perm   7 sec   (5505 perm/sec)   p_kst 2.442500e-02   p_cons 7.252500e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 6.269325e-02	ci left: 7.024192e-02	ci right 7.480786e-02	k: 3625	n:50000
KS ci ratio: 1.108972e-01	ci left: 2.302638e-02	ci right 2.574922e-02	k: 1218	n:50000
RCL1   50000 perm   9 sec   (5347 perm/sec)   p_kst 2.436000e-02   p_cons 7.250000e-02   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 5.718984e-02	ci left: 7.053615e-02	ci right 7.470530e-02	k: 4356	n:60000
KS ci ratio: 1.009805e-01	ci left: 2.326145e-02	ci right 2.575150e-02	k: 1469	n:60000
RCL1   60000 perm   12 sec   (5212 perm/sec)   p_kst 2.448333e-02   p_cons 7.260000e-02   p_joint 1

Joint ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
Cons ci ratio: 5.274179e-02	ci left: 7.121051e-02	ci right 7.508211e-02	k: 5119	n:70000
KS ci ratio: 9.301838e-02	ci left: 2.359073e-02	ci right 2.590604e-02	k: 1731	n:70000
RCL1   70000 perm   14 sec   (5094 perm/sec)   p_kst 2.472857e-02   p_cons 7.312857e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCL1.2_1158_70000_0.024729_0.073129_1.png
                gene_name: RCL1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.075 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
RCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
Cons ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
RCN3   10000 perm   1 sec   (6839 perm/sec)   p_kst 6.255000e-01   p_cons 5.946000e-01   p_joint 9.606000e-01

Outputting figure to mutsig2_images.part000000000145/RCN3.2_1011_10000_0.6255_0.5946_0.9606.png
                gene_name: RCN3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 72 percent done.
RCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
KS ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
RCOR1   10000 perm   2 sec   (6604 perm/sec)   p_kst 7.286000e-01   p_cons 1.132000e-01   p_joint 3.955000e-01

Joint ci ratio: 5.306632e-02	ci left: 2.086300e-01	ci right 2.200532e-01	k: 4286	n:20000
Cons ci ratio: 7.662953e-02	ci left: 1.112489e-01	ci right 1.201632e-01	k: 2313	n:20000
KS ci ratio: 1.680372e-02	ci left: 7.250478e-01	ci right 7.373849e-01	k: 14625	n:20000
RCOR1   20000 perm   3 sec   (5835 perm/sec)   p_kst 7.312500e-01   p_cons 1.156500e-01   p_joint 2.143000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR1.2_1497_20000_0.73125_0.11565_0.2143.png
                gene_name: RCOR1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 74 percent done.
RCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
RCOR2   10000 perm   2 sec   (6470 perm/sec)   p_kst 4.529000e-01   p_cons 2.467000e-01   p_joint 3.826000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR2.2_1620_10000_0.4529_0.2467_0.3826.png
                gene_name: RCOR2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 77 percent done.
RDH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
KS ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
RDH11   10000 perm   1 sec   (6985 perm/sec)   p_kst 8.707000e-01   p_cons 5.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RDH11.2_985_10000_0.8707_0.5005_1.png
                gene_name: RDH11
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
Cons ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
RDX   10000 perm   2 sec   (6403 perm/sec)   p_kst 4.906000e-01   p_cons 8.120000e-01   p_joint 9.837000e-01

Outputting figure to mutsig2_images.part000000000145/RDX.2_1804_10000_0.4906_0.812_0.9837.png
                gene_name: RDX
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
RECQL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.859077e-02	ci left: 8.086701e-01	ci right 8.239452e-01	k: 8164	n:10000
KS ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
RECQL   10000 perm   2 sec   (6222 perm/sec)   p_kst 5.757000e-01   p_cons 8.164000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RECQL.2_2006_10000_0.5757_0.8164_1.png
                gene_name: RECQL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
RECQL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
Cons ci ratio: 1.181361e-02	ci left: 9.112147e-01	ci right 9.221412e-01	k: 9168	n:10000
KS ci ratio: 4.203180e-02	ci left: 4.552854e-01	ci right 4.749349e-01	k: 4651	n:10000
RECQL5   10000 perm   2 sec   (5790 perm/sec)   p_kst 4.651000e-01   p_cons 9.168000e-01   p_joint 7.366000e-01

Outputting figure to mutsig2_images.part000000000145/RECQL5.2_3139_10000_0.4651_0.9168_0.7366.png
                gene_name: RECQL5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 86 percent done.
REL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 7.606034e-03	ci left: 9.599514e-01	ci right 9.673753e-01	k: 9638	n:10000
REL   10000 perm   2 sec   (6445 perm/sec)   p_kst 9.638000e-01   p_cons 7.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/REL.2_1904_10000_0.9638_0.7579_1.png
                gene_name: REL
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
REPIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
Cons ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
KS ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
REPIN1   10000 perm   2 sec   (6550 perm/sec)   p_kst 4.413000e-01   p_cons 2.771000e-01   p_joint 2.888000e-01

Outputting figure to mutsig2_images.part000000000145/REPIN1.2_1883_10000_0.4413_0.2771_0.2888.png
                gene_name: REPIN1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 91 percent done.
RETNLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
Cons ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
KS ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
RETNLB   10000 perm   1 sec   (7550 perm/sec)   p_kst 8.200000e-02   p_cons 6.982000e-01   p_joint 5.630000e-01

Joint ci ratio: 2.255790e-02	ci left: 5.947255e-01	ci right 6.083449e-01	k: 12031	n:20000
Cons ci ratio: 1.829690e-02	ci left: 6.900748e-01	ci right 7.028680e-01	k: 13930	n:20000
KS ci ratio: 9.165060e-02	ci left: 7.994658e-02	ci right 8.767492e-02	k: 1675	n:20000
RETNLB   20000 perm   3 sec   (6579 perm/sec)   p_kst 8.375000e-02   p_cons 6.965000e-01   p_joint 6.015500e-01

Outputting figure to mutsig2_images.part000000000145/RETNLB.2_348_20000_0.08375_0.6965_0.60155.png
                gene_name: RETNLB
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 93 percent done.
REXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
Cons ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
KS ci ratio: 3.165106e-02	ci left: 5.956404e-01	ci right 6.148982e-01	k: 6053	n:10000
REXO4   10000 perm   2 sec   (6560 perm/sec)   p_kst 6.053000e-01   p_cons 9.739000e-01   p_joint 7.472000e-01

Outputting figure to mutsig2_images.part000000000145/REXO4.2_1301_10000_0.6053_0.9739_0.7472.png
                gene_name: REXO4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 95 percent done.
RFC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KS ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
RFC2   10000 perm   2 sec   (6630 perm/sec)   p_kst 5.063000e-01   p_cons 9.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RFC2.2_1109_10000_0.5063_0.9555_1.png
                gene_name: RFC2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RFESD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
Cons ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
KS ci ratio: 4.926359e-02	ci left: 3.780349e-01	ci right 3.972306e-01	k: 3876	n:10000
RFESD   10000 perm   1 sec   (6962 perm/sec)   p_kst 3.876000e-01   p_cons 6.609000e-01   p_joint 6.640000e-01

Outputting figure to mutsig2_images.part000000000145/RFESD.2_653_10000_0.3876_0.6609_0.664.png
                gene_name: RFESD
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000145
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 145 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 4422378: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000146> was used as the working directory.
Started at Wed Oct 24 18:06:15 2012
Results reported at Wed Oct 24 19:01:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000146.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000146.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 146  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000146.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3391.54 sec.
    Max Memory :      5275 MB
    Max Swap   :      7695 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
146
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 146
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 146: processing genes 13119 - 13209
Calculating significance of each gene.
Using projection method.
13119	RFPL2	1
13120	RFPL3	1
13121	RFPL4B	8.526016e-02
13122	RFT1	8.786808e-01
13123	RFTN1	7.707567e-01
13124	RFTN2	1.344153e-02
13125	RFWD2	1
13126	RFWD3	8.519226e-01
13127	RFX1	1
13128	RFX2	9.706413e-01
13129	RFX3	1
13130	RFX4	1
13131	RFX5	8.143087e-01
13132	RFX6	5.740554e-01
13133	RFX7	9.970821e-01
13134	RFXANK	1
13135	RFXAP	1
13136	RG9MTD1	2.095178e-01
13137	RG9MTD2	4.916585e-01
13138	RG9MTD3	8.323727e-01
13139	RGAG1	9.877240e-01
13140	RGAG4	4.290486e-01
13141	RGL1	9.113933e-01
13142	RGL2	9.658098e-01
13143	RGL3	8.728145e-01
13144	RGL4	9.710020e-01
13145	RGMA	8.745806e-01
13146	RGMB	2.909417e-01
13147	RGN	4.180415e-01
13148	RGNEF	9.997588e-01
13149	RGP1	8.556061e-01
13150	RGPD3	9.012158e-01
13151	RGPD4	8.085014e-01
13152	RGPD8	1
13153	RGR	1
13154	RGS1	9.225871e-02
13155	RGS10	1
13156	RGS11	8.465164e-01
13157	RGS12	1
13158	RGS13	1.710320e-01
13159	RGS14	1
13160	RGS16	4.067656e-01
13161	RGS17	1
13162	RGS18	4.539371e-01
13163	RGS19	1
13164	RGS2	4.028344e-01
13165	RGS20	3.373190e-02
13166	RGS21	1
13167	RGS22	2.275712e-01
13168	RGS3	8.601892e-01
13169	RGS4	6.453852e-01
13170	RGS5	3.272659e-02
13171	RGS6	1
13172	RGS7	9.998035e-04
13173	RGS7BP	5.720186e-01
13174	RGS8	3.564674e-02
13175	RGS9	4.790392e-01
13176	RHAG	8.367840e-01
13177	RHBDD1	3.354074e-01
13178	RHBDD2	1
13179	RHBDD3	1
13180	RHBDF1	9.262286e-01
13181	RHBDF2	7.560501e-01
13182	RHBDL1	2.273792e-01
13183	RHBDL2	6.354443e-01
13184	RHBDL3	1
13185	RHBG	3.990820e-02
13186	RHCE	7.037183e-01
13187	RHCG	6.795324e-02
13188	RHD	7.883830e-01
13189	RHEB	1.350021e-02
13190	RHEBL1	1
13191	RHO	1
13192	RHOA	4.134506e-01
13193	RHOB	1
13194	RHOBTB1	6.625254e-01
13195	RHOBTB2	7.966083e-01
13196	RHOBTB3	1
13197	RHOC	7.827047e-01
13198	RHOD	1
13199	RHOF	1
13200	RHOG	1
13201	RHOH	1.622149e-01
13202	RHOJ	6.084415e-01
13203	RHOQ	1
13204	RHOT1	9.290961e-01
13205	RHOT2	9.707229e-01
13206	RHOU	2.738993e-01
13207	RHOV	1
13208	RHOXF1	2.098054e-01
13209	RHPN1	2.676122e-01
Done

Running MutSig 2:
Scatter job 146: processing genes 13119 - 13209
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RGPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
RGPD4   10000 perm   3 sec   (3702 perm/sec)   p_kst 2.800000e-03   p_cons 1.640000e-02   p_joint 1.350000e-02

Joint ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
Cons ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
KS ci ratio: 5.428855e-01	ci left: 1.899214e-03	ci right 3.351433e-03	k: 51	n:20000
RGPD4   20000 perm   8 sec   (2447 perm/sec)   p_kst 2.550000e-03   p_cons 1.580000e-02   p_joint 8.250000e-03

Joint ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
Cons ci ratio: 1.666913e-01	ci left: 1.658962e-02	ci right 1.963806e-02	k: 542	n:30000
KS ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
RGPD4   30000 perm   11 sec   (2652 perm/sec)   p_kst 2.566667e-03   p_cons 1.806667e-02   p_joint 3.866667e-03

Joint ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
Cons ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
KS ci ratio: 3.915048e-01	ci left: 2.011999e-03	ci right 3.012412e-03	k: 99	n:40000
RGPD4   40000 perm   14 sec   (2759 perm/sec)   p_kst 2.475000e-03   p_cons 1.857500e-02   p_joint 3.275000e-03

Joint ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
Cons ci ratio: 1.209369e-01	ci left: 1.933406e-02	ci right 2.184204e-02	k: 1028	n:50000
KS ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
RGPD4   50000 perm   18 sec   (2817 perm/sec)   p_kst 2.380000e-03   p_cons 2.056000e-02   p_joint 1.840000e-03

Joint ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
Cons ci ratio: 1.108961e-01	ci left: 1.926757e-02	ci right 2.154582e-02	k: 1223	n:60000
KS ci ratio: 3.229172e-01	ci left: 2.055015e-03	ci right 2.860984e-03	k: 146	n:60000
RGPD4   60000 perm   21 sec   (2844 perm/sec)   p_kst 2.433333e-03   p_cons 2.038333e-02   p_joint 1.633333e-03

Joint ci ratio: 3.804530e-01	ci left: 1.227010e-03	ci right 1.815555e-03	k: 105	n:70000
Cons ci ratio: 1.029278e-01	ci left: 1.925415e-02	ci right 2.135731e-02	k: 1420	n:70000
KS ci ratio: 3.011721e-01	ci left: 2.051143e-03	ci right 2.791068e-03	k: 168	n:70000
RGPD4   70000 perm   24 sec   (2861 perm/sec)   p_kst 2.400000e-03   p_cons 2.028571e-02   p_joint 1.500000e-03

Joint ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
Cons ci ratio: 9.571028e-02	ci left: 1.955365e-02	ci right 2.153134e-02	k: 1642	n:80000
KS ci ratio: 2.761462e-01	ci left: 2.165860e-03	ci right 2.870991e-03	k: 200	n:80000
RGPD4   80000 perm   28 sec   (2872 perm/sec)   p_kst 2.500000e-03   p_cons 2.052500e-02   p_joint 1.450000e-03

Joint ci ratio: 3.701726e-01	ci left: 1.014698e-03	ci right 1.485064e-03	k: 111	n:90000
Cons ci ratio: 9.074856e-02	ci left: 1.938859e-02	ci right 2.124251e-02	k: 1827	n:90000
KS ci ratio: 2.621758e-01	ci left: 2.153166e-03	ci right 2.812888e-03	k: 222	n:90000
RGPD4   90000 perm   31 sec   (2871 perm/sec)   p_kst 2.466667e-03   p_cons 2.030000e-02   p_joint 1.233333e-03

Joint ci ratio: 3.449124e-01	ci left: 1.067981e-03	ci right 1.521740e-03	k: 128	n:100000
Cons ci ratio: 8.587854e-02	ci left: 1.953276e-02	ci right 2.129521e-02	k: 2040	n:100000
KS ci ratio: 2.481092e-01	ci left: 2.181238e-03	ci right 2.808175e-03	k: 248	n:100000
RGPD4   100000 perm   35 sec   (2867 perm/sec)   p_kst 2.480000e-03   p_cons 2.040000e-02   p_joint 1.280000e-03

Joint ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
Cons ci ratio: 8.175386e-02	ci left: 1.963508e-02	ci right 2.131761e-02	k: 2251	n:110000
KS ci ratio: 2.352322e-01	ci left: 2.222090e-03	ci right 2.822801e-03	k: 276	n:110000
RGPD4   110000 perm   39 sec   (2857 perm/sec)   p_kst 2.509091e-03   p_cons 2.046364e-02   p_joint 1.090909e-03

Joint ci ratio: 3.436190e-01	ci left: 8.975828e-04	ci right 1.277192e-03	k: 129	n:120000
Cons ci ratio: 7.839935e-02	ci left: 1.960761e-02	ci right 2.121568e-02	k: 2448	n:120000
KS ci ratio: 2.252857e-01	ci left: 2.233238e-03	ci right 2.807892e-03	k: 301	n:120000
RGPD4   120000 perm   42 sec   (2845 perm/sec)   p_kst 2.508333e-03   p_cons 2.040000e-02   p_joint 1.075000e-03

Joint ci ratio: 2.095501e-01	ci left: 2.403347e-03	ci right 2.973043e-03	k: 348	n:130000
Cons ci ratio: 7.518038e-02	ci left: 1.971392e-02	ci right 2.126142e-02	k: 2662	n:130000
KS ci ratio: 2.165029e-01	ci left: 2.243122e-03	ci right 2.794827e-03	k: 326	n:130000
RGPD4   130000 perm   46 sec   (2822 perm/sec)   p_kst 2.507692e-03   p_cons 2.047692e-02   p_joint 2.676923e-03

Joint ci ratio: 2.040747e-01	ci left: 2.360360e-03	ci right 2.903423e-03	k: 367	n:140000
Cons ci ratio: 7.223821e-02	ci left: 1.985531e-02	ci right 2.135035e-02	k: 2883	n:140000
KS ci ratio: 2.074945e-01	ci left: 2.279053e-03	ci right 2.813311e-03	k: 355	n:140000
RGPD4   140000 perm   50 sec   (2802 perm/sec)   p_kst 2.535714e-03   p_cons 2.059286e-02   p_joint 2.621429e-03

Joint ci ratio: 2.069304e-01	ci left: 2.139741e-03	ci right 2.639804e-03	k: 357	n:150000
Cons ci ratio: 6.991593e-02	ci left: 1.980850e-02	ci right 2.125012e-02	k: 3078	n:150000
KS ci ratio: 2.000461e-01	ci left: 2.297936e-03	ci right 2.814925e-03	k: 382	n:150000
RGPD4   150000 perm   54 sec   (2784 perm/sec)   p_kst 2.546667e-03   p_cons 2.052000e-02   p_joint 2.380000e-03

Joint ci ratio: 1.578940e-01	ci left: 3.534437e-03	ci right 4.146258e-03	k: 613	n:160000
Cons ci ratio: 6.765657e-02	ci left: 1.985427e-02	ci right 2.125068e-02	k: 3287	n:160000
KS ci ratio: 1.945391e-01	ci left: 2.285022e-03	ci right 2.783277e-03	k: 404	n:160000
RGPD4   160000 perm   58 sec   (2766 perm/sec)   p_kst 2.525000e-03   p_cons 2.054375e-02   p_joint 3.831250e-03

Joint ci ratio: 1.601525e-01	ci left: 3.230467e-03	ci right 3.798437e-03	k: 596	n:170000
Cons ci ratio: 6.554560e-02	ci left: 1.993004e-02	ci right 2.128638e-02	k: 3502	n:170000
KS ci ratio: 1.908118e-01	ci left: 2.240182e-03	ci right 2.718214e-03	k: 420	n:170000
RGPD4   170000 perm   62 sec   (2746 perm/sec)   p_kst 2.470588e-03   p_cons 2.060000e-02   p_joint 3.505882e-03

Joint ci ratio: 1.552854e-01	ci left: 3.253780e-03	ci right 3.806844e-03	k: 634	n:180000
Cons ci ratio: 6.350735e-02	ci left: 2.006909e-02	ci right 2.139086e-02	k: 3730	n:180000
KS ci ratio: 1.843537e-01	ci left: 2.274573e-03	ci right 2.741680e-03	k: 450	n:180000
RGPD4   180000 perm   66 sec   (2727 perm/sec)   p_kst 2.500000e-03   p_cons 2.072222e-02   p_joint 3.522222e-03

Joint ci ratio: 2.196381e-01	ci left: 1.489921e-03	ci right 1.862390e-03	k: 317	n:190000
Cons ci ratio: 6.181575e-02	ci left: 2.008522e-02	ci right 2.137156e-02	k: 3937	n:190000
KS ci ratio: 1.747264e-01	ci left: 2.411239e-03	ci right 2.877826e-03	k: 501	n:190000
RGPD4   190000 perm   70 sec   (2706 perm/sec)   p_kst 2.636842e-03   p_cons 2.072105e-02   p_joint 1.668421e-03

Joint ci ratio: 2.146352e-01	ci left: 1.486346e-03	ci right 1.848343e-03	k: 332	n:200000
Cons ci ratio: 6.023766e-02	ci left: 2.011002e-02	ci right 2.136392e-02	k: 4146	n:200000
KS ci ratio: 1.702088e-01	ci left: 2.419851e-03	ci right 2.874755e-03	k: 528	n:200000
RGPD4   200000 perm   74 sec   (2685 perm/sec)   p_kst 2.640000e-03   p_cons 2.073000e-02   p_joint 1.660000e-03

Joint ci ratio: 2.093576e-01	ci left: 1.492223e-03	ci right 1.845570e-03	k: 349	n:210000
Cons ci ratio: 5.877458e-02	ci left: 2.013284e-02	ci right 2.135663e-02	k: 4355	n:210000
KS ci ratio: 1.669299e-01	ci left: 2.400399e-03	ci right 2.842080e-03	k: 549	n:210000
RGPD4   210000 perm   79 sec   (2664 perm/sec)   p_kst 2.614286e-03   p_cons 2.073810e-02   p_joint 1.661905e-03

Joint ci ratio: 2.050114e-01	ci left: 1.489039e-03	ci right 1.833395e-03	k: 364	n:220000
Cons ci ratio: 5.740675e-02	ci left: 2.015840e-02	ci right 2.135428e-02	k: 4565	n:220000
KS ci ratio: 1.628358e-01	ci left: 2.413312e-03	ci right 2.845413e-03	k: 577	n:220000
RGPD4   220000 perm   83 sec   (2638 perm/sec)   p_kst 2.622727e-03   p_cons 2.075000e-02   p_joint 1.654545e-03

Joint ci ratio: 1.996140e-01	ci left: 1.506852e-03	ci right 1.845036e-03	k: 384	n:230000
Cons ci ratio: 5.633530e-02	ci left: 2.003624e-02	ci right 2.120197e-02	k: 4741	n:230000
KS ci ratio: 1.590289e-01	ci left: 2.425224e-03	ci right 2.848335e-03	k: 605	n:230000
RGPD4   230000 perm   88 sec   (2613 perm/sec)   p_kst 2.630435e-03   p_cons 2.061304e-02   p_joint 1.669565e-03

Joint ci ratio: 1.968244e-01	ci left: 1.487624e-03	ci right 1.816266e-03	k: 395	n:240000
Cons ci ratio: 5.519003e-02	ci left: 2.001900e-02	ci right 2.115929e-02	k: 4940	n:240000
KS ci ratio: 1.551095e-01	ci left: 2.448265e-03	ci right 2.863891e-03	k: 636	n:240000
RGPD4   240000 perm   93 sec   (2590 perm/sec)   p_kst 2.650000e-03   p_cons 2.058333e-02   p_joint 1.645833e-03

Joint ci ratio: 2.001488e-01	ci left: 1.378695e-03	ci right 1.689046e-03	k: 382	n:250000
Cons ci ratio: 5.416031e-02	ci left: 1.996783e-02	ci right 2.108332e-02	k: 5130	n:250000
KS ci ratio: 1.523839e-01	ci left: 2.438794e-03	ci right 2.844873e-03	k: 659	n:250000
RGPD4   250000 perm   97 sec   (2568 perm/sec)   p_kst 2.636000e-03   p_cons 2.052000e-02   p_joint 1.528000e-03

Joint ci ratio: 1.532084e-01	ci left: 2.319090e-03	ci right 2.707517e-03	k: 652	n:260000
Cons ci ratio: 5.301855e-02	ci left: 2.004606e-02	ci right 2.114159e-02	k: 5353	n:260000
KS ci ratio: 1.497972e-01	ci left: 2.430111e-03	ci right 2.827260e-03	k: 682	n:260000
RGPD4   260000 perm   102 sec   (2549 perm/sec)   p_kst 2.623077e-03   p_cons 2.058846e-02   p_joint 2.507692e-03

Joint ci ratio: 1.522833e-01	ci left: 2.261689e-03	ci right 2.638007e-03	k: 660	n:270000
Cons ci ratio: 5.207493e-02	ci left: 2.001999e-02	ci right 2.109404e-02	k: 5549	n:270000
KS ci ratio: 1.465079e-01	ci left: 2.450667e-03	ci right 2.841612e-03	k: 713	n:270000
RGPD4   270000 perm   107 sec   (2529 perm/sec)   p_kst 2.640741e-03   p_cons 2.055185e-02   p_joint 2.444444e-03

Joint ci ratio: 1.525214e-01	ci left: 2.174037e-03	ci right 2.536387e-03	k: 658	n:280000
Cons ci ratio: 5.125743e-02	ci left: 1.993600e-02	ci right 2.098825e-02	k: 5728	n:280000
KS ci ratio: 1.443028e-01	ci left: 2.438855e-03	ci right 2.821555e-03	k: 735	n:280000
RGPD4   280000 perm   112 sec   (2509 perm/sec)   p_kst 2.625000e-03   p_cons 2.045714e-02   p_joint 2.350000e-03

Joint ci ratio: 1.537009e-01	ci left: 2.065899e-03	ci right 2.413133e-03	k: 648	n:290000
Cons ci ratio: 5.024335e-02	ci left: 2.004183e-02	ci right 2.107813e-02	k: 5961	n:290000
KS ci ratio: 1.411710e-01	ci left: 2.464489e-03	ci right 2.842111e-03	k: 768	n:290000
RGPD4   290000 perm   117 sec   (2479 perm/sec)   p_kst 2.648276e-03   p_cons 2.055517e-02   p_joint 2.234483e-03

Joint ci ratio: 2.085174e-01	ci left: 1.054008e-03	ci right 1.302456e-03	k: 352	n:300000
Cons ci ratio: 4.939717e-02	ci left: 2.005188e-02	ci right 2.107074e-02	k: 6167	n:300000
KS ci ratio: 1.370405e-01	ci left: 2.533560e-03	ci right 2.909482e-03	k: 815	n:300000
RGPD4   300000 perm   122 sec   (2460 perm/sec)   p_kst 2.716667e-03   p_cons 2.055667e-02   p_joint 1.173333e-03

Joint ci ratio: 2.176636e-01	ci left: 9.314424e-04	ci right 1.161920e-03	k: 323	n:310000
Cons ci ratio: 4.869386e-02	ci left: 1.997855e-02	ci right 2.097883e-02	k: 6347	n:310000
KS ci ratio: 1.342702e-01	ci left: 2.557790e-03	ci right 2.929022e-03	k: 849	n:310000
RGPD4   310000 perm   127 sec   (2441 perm/sec)   p_kst 2.738710e-03   p_cons 2.047419e-02   p_joint 1.041935e-03

Joint ci ratio: 2.163345e-01	ci left: 9.141545e-04	ci right 1.138789e-03	k: 327	n:320000
Cons ci ratio: 4.793360e-02	ci left: 1.998093e-02	ci right 2.096528e-02	k: 6550	n:320000
KS ci ratio: 1.324146e-01	ci left: 2.550356e-03	ci right 2.914992e-03	k: 873	n:320000
RGPD4   320000 perm   132 sec   (2422 perm/sec)   p_kst 2.728125e-03   p_cons 2.046875e-02   p_joint 1.021875e-03

Joint ci ratio: 2.137443e-01	ci left: 9.093895e-04	ci right 1.129827e-03	k: 335	n:330000
Cons ci ratio: 4.721145e-02	ci left: 1.998029e-02	ci right 2.094937e-02	k: 6752	n:330000
KS ci ratio: 1.303430e-01	ci left: 2.555133e-03	ci right 2.914294e-03	k: 901	n:330000
RGPD4   330000 perm   137 sec   (2403 perm/sec)   p_kst 2.730303e-03   p_cons 2.046061e-02   p_joint 1.015152e-03

Joint ci ratio: 2.106329e-01	ci left: 9.104917e-04	ci right 1.127569e-03	k: 345	n:340000
Cons ci ratio: 4.646305e-02	ci left: 2.002922e-02	ci right 2.098486e-02	k: 6971	n:340000
KS ci ratio: 1.289230e-01	ci left: 2.536897e-03	ci right 2.889311e-03	k: 921	n:340000
RGPD4   340000 perm   143 sec   (2384 perm/sec)   p_kst 2.708824e-03   p_cons 2.050294e-02   p_joint 1.014706e-03

Joint ci ratio: 2.109414e-01	ci left: 8.817699e-04	ci right 1.092347e-03	k: 344	n:350000
Cons ci ratio: 4.574264e-02	ci left: 2.008112e-02	ci right 2.102399e-02	k: 7192	n:350000
KS ci ratio: 1.266084e-01	ci left: 2.558454e-03	ci right 2.907003e-03	k: 955	n:350000
RGPD4   350000 perm   148 sec   (2361 perm/sec)   p_kst 2.728571e-03   p_cons 2.054857e-02   p_joint 9.828571e-04

Joint ci ratio: 2.100322e-01	ci left: 8.651696e-04	ci right 1.070777e-03	k: 347	n:360000
Cons ci ratio: 4.510135e-02	ci left: 2.008903e-02	ci right 2.101871e-02	k: 7398	n:360000
KS ci ratio: 1.253702e-01	ci left: 2.538498e-03	ci right 2.880696e-03	k: 974	n:360000
RGPD4   360000 perm   154 sec   (2340 perm/sec)   p_kst 2.705556e-03   p_cons 2.055000e-02   p_joint 9.638889e-04

Joint ci ratio: 2.094334e-01	ci left: 8.469073e-04	ci right 1.047527e-03	k: 349	n:370000
Cons ci ratio: 4.445645e-02	ci left: 2.012334e-02	ci right 2.104095e-02	k: 7614	n:370000
KS ci ratio: 1.241050e-01	ci left: 2.522256e-03	ci right 2.858581e-03	k: 994	n:370000
RGPD4   370000 perm   159 sec   (2320 perm/sec)   p_kst 2.686486e-03   p_cons 2.057838e-02   p_joint 9.432432e-04

Joint ci ratio: 2.067917e-01	ci left: 8.470702e-04	ci right 1.044878e-03	k: 358	n:380000
Cons ci ratio: 4.386420e-02	ci left: 2.013250e-02	ci right 2.103799e-02	k: 7821	n:380000
KS ci ratio: 1.225750e-01	ci left: 2.519640e-03	ci right 2.851173e-03	k: 1019	n:380000
RGPD4   380000 perm   165 sec   (2302 perm/sec)   p_kst 2.681579e-03   p_cons 2.058158e-02   p_joint 9.421053e-04

Joint ci ratio: 2.115667e-01	ci left: 7.864709e-04	ci right 9.749181e-04	k: 342	n:390000
Cons ci ratio: 4.237203e-02	ci left: 2.101915e-02	ci right 2.193157e-02	k: 8374	n:390000
KS ci ratio: 1.209262e-01	ci left: 2.524643e-03	ci right 2.852046e-03	k: 1047	n:390000
RGPD4   390000 perm   171 sec   (2283 perm/sec)   p_kst 2.684615e-03   p_cons 2.147179e-02   p_joint 8.769231e-04

Joint ci ratio: 2.094409e-01	ci left: 7.833865e-04	ci right 9.689666e-04	k: 349	n:400000
Cons ci ratio: 4.184585e-02	ci left: 2.101809e-02	ci right 2.191886e-02	k: 8586	n:400000
KS ci ratio: 1.192313e-01	ci left: 2.534275e-03	ci right 2.857996e-03	k: 1077	n:400000
RGPD4   400000 perm   177 sec   (2264 perm/sec)   p_kst 2.692500e-03   p_cons 2.146500e-02   p_joint 8.725000e-04

Joint ci ratio: 2.251146e-01	ci left: 6.558703e-04	ci right 8.244856e-04	k: 302	n:410000
Cons ci ratio: 4.139654e-02	ci left: 2.095920e-02	ci right 2.184758e-02	k: 8774	n:410000
KS ci ratio: 1.172349e-01	ci left: 2.560040e-03	ci right 2.881198e-03	k: 1114	n:410000
RGPD4   410000 perm   183 sec   (2235 perm/sec)   p_kst 2.717073e-03   p_cons 2.140000e-02   p_joint 7.365854e-04

Joint ci ratio: 2.240096e-01	ci left: 6.469950e-04	ci right 8.123994e-04	k: 305	n:420000
Cons ci ratio: 4.085440e-02	ci left: 2.101160e-02	ci right 2.189026e-02	k: 9008	n:420000
KS ci ratio: 1.160958e-01	ci left: 2.549939e-03	ci right 2.866508e-03	k: 1136	n:420000
RGPD4   420000 perm   190 sec   (2208 perm/sec)   p_kst 2.704762e-03   p_cons 2.144762e-02   p_joint 7.261905e-04

Joint ci ratio: 2.258657e-01	ci left: 6.209749e-04	ci right 7.812258e-04	k: 300	n:430000
Cons ci ratio: 4.037096e-02	ci left: 2.102249e-02	ci right 2.189096e-02	k: 9225	n:430000
KS ci ratio: 1.143971e-01	ci left: 2.567429e-03	ci right 2.881191e-03	k: 1170	n:430000
RGPD4   430000 perm   196 sec   (2191 perm/sec)   p_kst 2.720930e-03   p_cons 2.145349e-02   p_joint 6.976744e-04

Joint ci ratio: 2.240133e-01	ci left: 6.175851e-04	ci right 7.754737e-04	k: 305	n:440000
Cons ci ratio: 3.993239e-02	ci left: 2.100368e-02	ci right 2.186173e-02	k: 9429	n:440000
KS ci ratio: 1.129118e-01	ci left: 2.577531e-03	ci right 2.888166e-03	k: 1201	n:440000
RGPD4   440000 perm   202 sec   (2174 perm/sec)   p_kst 2.729545e-03   p_cons 2.142955e-02   p_joint 6.931818e-04

Joint ci ratio: 2.236496e-01	ci left: 6.059582e-04	ci right 7.605881e-04	k: 306	n:450000
Cons ci ratio: 3.945761e-02	ci left: 2.103858e-02	ci right 2.188760e-02	k: 9657	n:450000
KS ci ratio: 1.110771e-01	ci left: 2.606654e-03	ci right 2.915359e-03	k: 1241	n:450000
RGPD4   450000 perm   209 sec   (2156 perm/sec)   p_kst 2.757778e-03   p_cons 2.146000e-02   p_joint 6.800000e-04

Joint ci ratio: 1.659950e-01	ci left: 1.110356e-03	ci right 1.313402e-03	k: 556	n:460000
Cons ci ratio: 3.900946e-02	ci left: 2.106125e-02	ci right 2.190132e-02	k: 9880	n:460000
KS ci ratio: 1.095865e-01	ci left: 2.621862e-03	ci right 2.927933e-03	k: 1275	n:460000
RGPD4   460000 perm   215 sec   (2135 perm/sec)   p_kst 2.771739e-03   p_cons 2.147826e-02   p_joint 1.208696e-03

Joint ci ratio: 1.714783e-01	ci left: 1.015403e-03	ci right 1.207854e-03	k: 521	n:470000
Cons ci ratio: 3.854311e-02	ci left: 2.111884e-02	ci right 2.195091e-02	k: 10120	n:470000
KS ci ratio: 1.086965e-01	ci left: 2.609538e-03	ci right 2.911537e-03	k: 1296	n:470000
RGPD4   470000 perm   222 sec   (2114 perm/sec)   p_kst 2.757447e-03   p_cons 2.153191e-02   p_joint 1.108511e-03

Joint ci ratio: 1.721418e-01	ci left: 9.862722e-04	ci right 1.174000e-03	k: 517	n:480000
Cons ci ratio: 3.814958e-02	ci left: 2.111216e-02	ci right 2.193529e-02	k: 10330	n:480000
KS ci ratio: 1.077050e-01	ci left: 2.603819e-03	ci right 2.902234e-03	k: 1320	n:480000
RGPD4   480000 perm   229 sec   (2098 perm/sec)   p_kst 2.750000e-03   p_cons 2.152083e-02   p_joint 1.077083e-03

Joint ci ratio: 1.705040e-01	ci left: 9.856773e-04	ci right 1.171324e-03	k: 527	n:490000
Cons ci ratio: 3.779352e-02	ci left: 2.107750e-02	ci right 2.189144e-02	k: 10526	n:490000
KS ci ratio: 1.065417e-01	ci left: 2.608278e-03	ci right 2.903773e-03	k: 1349	n:490000
RGPD4   490000 perm   235 sec   (2082 perm/sec)   p_kst 2.753061e-03   p_cons 2.148163e-02   p_joint 1.075510e-03

Joint ci ratio: 1.692273e-01	ci left: 9.812833e-04	ci right 1.164577e-03	k: 535	n:500000
Cons ci ratio: 3.743476e-02	ci left: 2.105812e-02	ci right 2.186343e-02	k: 10729	n:500000
KS ci ratio: 1.051481e-01	ci left: 2.626208e-03	ci right 2.919601e-03	k: 1385	n:500000
RGPD4   500000 perm   243 sec   (2059 perm/sec)   p_kst 2.770000e-03   p_cons 2.145800e-02   p_joint 1.070000e-03

Joint ci ratio: 1.678244e-01	ci left: 9.789451e-04	ci right 1.160133e-03	k: 544	n:510000
Cons ci ratio: 3.706525e-02	ci left: 2.106286e-02	ci right 2.186023e-02	k: 10944	n:510000
KS ci ratio: 1.044356e-01	ci left: 2.610991e-03	ci right 2.900586e-03	k: 1404	n:510000
RGPD4   510000 perm   250 sec   (2037 perm/sec)   p_kst 2.752941e-03   p_cons 2.145882e-02   p_joint 1.066667e-03

Joint ci ratio: 1.657090e-01	ci left: 9.859190e-04	ci right 1.165868e-03	k: 558	n:520000
Cons ci ratio: 3.672160e-02	ci left: 2.105030e-02	ci right 2.183965e-02	k: 11150	n:520000
KS ci ratio: 1.034102e-01	ci left: 2.613226e-03	ci right 2.900051e-03	k: 1432	n:520000
RGPD4   520000 perm   258 sec   (2014 perm/sec)   p_kst 2.753846e-03   p_cons 2.144231e-02   p_joint 1.073077e-03

Joint ci ratio: 1.646817e-01	ci left: 9.799780e-04	ci right 1.157624e-03	k: 565	n:530000
Cons ci ratio: 3.634321e-02	ci left: 2.108874e-02	ci right 2.187122e-02	k: 11383	n:530000
KS ci ratio: 1.028032e-01	ci left: 2.595167e-03	ci right 2.878237e-03	k: 1449	n:530000
RGPD4   530000 perm   265 sec   (1999 perm/sec)   p_kst 2.733962e-03   p_cons 2.147736e-02   p_joint 1.066038e-03

Joint ci ratio: 1.632460e-01	ci left: 9.795889e-04	ci right 1.155464e-03	k: 575	n:540000
Cons ci ratio: 3.600797e-02	ci left: 2.108909e-02	ci right 2.186421e-02	k: 11596	n:540000
KS ci ratio: 1.015153e-01	ci left: 2.613877e-03	ci right 2.895203e-03	k: 1486	n:540000
RGPD4   540000 perm   272 sec   (1985 perm/sec)   p_kst 2.751852e-03   p_cons 2.147407e-02   p_joint 1.064815e-03

Joint ci ratio: 1.614341e-01	ci left: 9.844545e-04	ci right 1.159051e-03	k: 588	n:550000
Cons ci ratio: 3.567258e-02	ci left: 2.110027e-02	ci right 2.186842e-02	k: 11815	n:550000
KS ci ratio: 1.006394e-01	ci left: 2.612430e-03	ci right 2.891031e-03	k: 1512	n:550000
RGPD4   550000 perm   279 sec   (1971 perm/sec)   p_kst 2.749091e-03   p_cons 2.148182e-02   p_joint 1.069091e-03

Joint ci ratio: 1.703541e-01	ci left: 8.641725e-04	ci right 1.026776e-03	k: 528	n:560000
Cons ci ratio: 3.537794e-02	ci left: 2.107390e-02	ci right 2.183463e-02	k: 12013	n:560000
KS ci ratio: 9.985089e-02	ci left: 2.607562e-03	ci right 2.883337e-03	k: 1536	n:560000
RGPD4   560000 perm   286 sec   (1957 perm/sec)   p_kst 2.742857e-03   p_cons 2.145179e-02   p_joint 9.428571e-04

Joint ci ratio: 1.766508e-01	ci left: 7.869144e-04	ci right 9.410386e-04	k: 491	n:570000
Cons ci ratio: 3.509637e-02	ci left: 2.104153e-02	ci right 2.179493e-02	k: 12207	n:570000
KS ci ratio: 9.911246e-02	ci left: 2.601162e-03	ci right 2.874107e-03	k: 1559	n:570000
RGPD4   570000 perm   293 sec   (1943 perm/sec)   p_kst 2.735088e-03   p_cons 2.141579e-02   p_joint 8.614035e-04

Joint ci ratio: 1.754076e-01	ci left: 7.848840e-04	ci right 9.374141e-04	k: 498	n:580000
Cons ci ratio: 3.480850e-02	ci left: 2.102568e-02	ci right 2.177221e-02	k: 12410	n:580000
KS ci ratio: 9.811091e-02	ci left: 2.610126e-03	ci right 2.881085e-03	k: 1591	n:580000
RGPD4   580000 perm   301 sec   (1929 perm/sec)   p_kst 2.743103e-03   p_cons 2.139655e-02   p_joint 8.586207e-04

Joint ci ratio: 1.786636e-01	ci left: 7.424227e-04	ci right 8.896687e-04	k: 480	n:590000
Cons ci ratio: 3.452620e-02	ci left: 2.101208e-02	ci right 2.175195e-02	k: 12614	n:590000
KS ci ratio: 9.710914e-02	ci left: 2.620454e-03	ci right 2.889550e-03	k: 1624	n:590000
RGPD4   590000 perm   308 sec   (1916 perm/sec)   p_kst 2.752542e-03   p_cons 2.137966e-02   p_joint 8.135593e-04

Joint ci ratio: 1.766546e-01	ci left: 7.475673e-04	ci right 8.939884e-04	k: 491	n:600000
Cons ci ratio: 3.423566e-02	ci left: 2.101713e-02	ci right 2.175084e-02	k: 12829	n:600000
KS ci ratio: 9.634159e-02	ci left: 2.619065e-03	ci right 2.885772e-03	k: 1650	n:600000
RGPD4   600000 perm   315 sec   (1903 perm/sec)   p_kst 2.750000e-03   p_cons 2.138167e-02   p_joint 8.183333e-04

Joint ci ratio: 1.748860e-01	ci left: 7.509844e-04	ci right 8.964467e-04	k: 501	n:610000
Cons ci ratio: 3.396164e-02	ci left: 2.101066e-02	ci right 2.173816e-02	k: 13037	n:610000
KS ci ratio: 9.573518e-02	ci left: 2.609728e-03	ci right 2.873718e-03	k: 1671	n:610000
RGPD4   610000 perm   323 sec   (1889 perm/sec)   p_kst 2.739344e-03   p_cons 2.137213e-02   p_joint 8.213115e-04

Joint ci ratio: 1.762987e-01	ci left: 7.265348e-04	ci right 8.685192e-04	k: 493	n:620000
Cons ci ratio: 3.370060e-02	ci left: 2.099643e-02	ci right 2.171773e-02	k: 13240	n:620000
KS ci ratio: 9.494346e-02	ci left: 2.611720e-03	ci right 2.873605e-03	k: 1699	n:620000
RGPD4   620000 perm   331 sec   (1875 perm/sec)   p_kst 2.740323e-03   p_cons 2.135484e-02   p_joint 7.951613e-04

Joint ci ratio: 1.762998e-01	ci left: 7.150022e-04	ci right 8.547337e-04	k: 493	n:630000
Cons ci ratio: 3.341629e-02	ci left: 2.101887e-02	ci right 2.173474e-02	k: 13466	n:630000
KS ci ratio: 9.428054e-02	ci left: 2.607458e-03	ci right 2.866989e-03	k: 1723	n:630000
RGPD4   630000 perm   338 sec   (1864 perm/sec)   p_kst 2.734921e-03   p_cons 2.137460e-02   p_joint 7.825397e-04

Joint ci ratio: 1.761226e-01	ci left: 7.053235e-04	ci right 8.430102e-04	k: 494	n:640000
Cons ci ratio: 3.313287e-02	ci left: 2.104839e-02	ci right 2.175907e-02	k: 13697	n:640000
KS ci ratio: 9.371199e-02	ci left: 2.598757e-03	ci right 2.855777e-03	k: 1744	n:640000
RGPD4   640000 perm   345 sec   (1853 perm/sec)   p_kst 2.725000e-03   p_cons 2.140156e-02   p_joint 7.718750e-04

Joint ci ratio: 1.761237e-01	ci left: 6.944720e-04	ci right 8.300413e-04	k: 494	n:650000
Cons ci ratio: 3.287343e-02	ci left: 2.105567e-02	ci right 2.176092e-02	k: 13914	n:650000
KS ci ratio: 9.270723e-02	ci left: 2.615876e-03	ci right 2.871665e-03	k: 1782	n:650000
RGPD4   650000 perm   353 sec   (1842 perm/sec)   p_kst 2.741538e-03   p_cons 2.140615e-02   p_joint 7.600000e-04

Joint ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
Cons ci ratio: 3.264124e-02	ci left: 2.103568e-02	ci right 2.173519e-02	k: 14113	n:660000
KS ci ratio: 9.208976e-02	ci left: 2.611765e-03	ci right 2.865358e-03	k: 1806	n:660000
RGPD4   660000 perm   361 sec   (1829 perm/sec)   p_kst 2.736364e-03   p_cons 2.138333e-02   p_joint 7.590909e-04

Joint ci ratio: 1.741993e-01	ci left: 6.894395e-04	ci right 8.224011e-04	k: 505	n:670000
Cons ci ratio: 3.240003e-02	ci left: 2.103408e-02	ci right 2.172828e-02	k: 14324	n:670000
KS ci ratio: 9.143440e-02	ci left: 2.610699e-03	ci right 2.862288e-03	k: 1832	n:670000
RGPD4   670000 perm   369 sec   (1817 perm/sec)   p_kst 2.734328e-03   p_cons 2.137910e-02   p_joint 7.537313e-04

Joint ci ratio: 1.723357e-01	ci left: 6.947758e-04	ci right 8.271841e-04	k: 516	n:680000
Cons ci ratio: 3.217200e-02	ci left: 2.102233e-02	ci right 2.171117e-02	k: 14528	n:680000
KS ci ratio: 9.071947e-02	ci left: 2.613982e-03	ci right 2.863814e-03	k: 1861	n:680000
RGPD4   680000 perm   377 sec   (1805 perm/sec)   p_kst 2.736765e-03   p_cons 2.136471e-02   p_joint 7.588235e-04

Joint ci ratio: 1.716733e-01	ci left: 6.902540e-04	ci right 8.212425e-04	k: 520	n:690000
Cons ci ratio: 3.194207e-02	ci left: 2.101957e-02	ci right 2.170330e-02	k: 14738	n:690000
KS ci ratio: 9.021260e-02	ci left: 2.605844e-03	ci right 2.853433e-03	k: 1882	n:690000
RGPD4   690000 perm   385 sec   (1793 perm/sec)   p_kst 2.727536e-03   p_cons 2.135942e-02   p_joint 7.536232e-04

Joint ci ratio: 1.702093e-01	ci left: 6.927004e-04	ci right 8.229171e-04	k: 529	n:700000
Cons ci ratio: 3.172893e-02	ci left: 2.100131e-02	ci right 2.167980e-02	k: 14937	n:700000
KS ci ratio: 8.957272e-02	ci left: 2.606322e-03	ci right 2.852108e-03	k: 1909	n:700000
RGPD4   700000 perm   393 sec   (1781 perm/sec)   p_kst 2.727143e-03   p_cons 2.133857e-02   p_joint 7.557143e-04

Joint ci ratio: 1.694124e-01	ci left: 6.896869e-04	ci right 8.186681e-04	k: 534	n:710000
Cons ci ratio: 3.150194e-02	ci left: 2.100734e-02	ci right 2.168108e-02	k: 15153	n:710000
KS ci ratio: 8.892325e-02	ci left: 2.608170e-03	ci right 2.852254e-03	k: 1937	n:710000
RGPD4   710000 perm   401 sec   (1770 perm/sec)   p_kst 2.728169e-03   p_cons 2.134225e-02   p_joint 7.521127e-04

Joint ci ratio: 1.702111e-01	ci left: 6.734581e-04	ci right 8.000590e-04	k: 529	n:720000
Cons ci ratio: 3.128910e-02	ci left: 2.100081e-02	ci right 2.166972e-02	k: 15360	n:720000
KS ci ratio: 8.835534e-02	ci left: 2.605897e-03	ci right 2.848131e-03	k: 1962	n:720000
RGPD4   720000 perm   410 sec   (1758 perm/sec)   p_kst 2.725000e-03   p_cons 2.133333e-02   p_joint 7.347222e-04

Joint ci ratio: 1.710212e-01	ci left: 6.576754e-04	ci right 7.819584e-04	k: 524	n:730000
Cons ci ratio: 3.107849e-02	ci left: 2.099720e-02	ci right 2.166140e-02	k: 15569	n:730000
KS ci ratio: 8.788686e-02	ci left: 2.598333e-03	ci right 2.838517e-03	k: 1983	n:730000
RGPD4   730000 perm   418 sec   (1747 perm/sec)   p_kst 2.716438e-03   p_cons 2.132740e-02   p_joint 7.178082e-04

Joint ci ratio: 1.702128e-01	ci left: 6.552560e-04	ci right 7.784365e-04	k: 529	n:740000
Cons ci ratio: 3.087807e-02	ci left: 2.098565e-02	ci right 2.164513e-02	k: 15772	n:740000
KS ci ratio: 8.729489e-02	ci left: 2.598908e-03	ci right 2.837444e-03	k: 2010	n:740000
RGPD4   740000 perm   426 sec   (1736 perm/sec)   p_kst 2.716216e-03   p_cons 2.131351e-02   p_joint 7.148649e-04

Joint ci ratio: 1.694158e-01	ci left: 6.529025e-04	ci right 7.750072e-04	k: 534	n:750000
Cons ci ratio: 3.065600e-02	ci left: 2.100883e-02	ci right 2.166421e-02	k: 16001	n:750000
KS ci ratio: 8.675742e-02	ci left: 2.596863e-03	ci right 2.833670e-03	k: 2035	n:750000
RGPD4   750000 perm   435 sec   (1725 perm/sec)   p_kst 2.713333e-03   p_cons 2.133467e-02   p_joint 7.120000e-04

Joint ci ratio: 1.686299e-01	ci left: 6.506123e-04	ci right 7.716668e-04	k: 539	n:760000
Cons ci ratio: 3.044728e-02	ci left: 2.101966e-02	ci right 2.167084e-02	k: 16221	n:760000
KS ci ratio: 8.604158e-02	ci left: 2.606465e-03	ci right 2.842088e-03	k: 2069	n:760000
RGPD4   760000 perm   443 sec   (1714 perm/sec)   p_kst 2.722368e-03   p_cons 2.134342e-02   p_joint 7.092105e-04

Joint ci ratio: 1.678548e-01	ci left: 6.483828e-04	ci right 7.684119e-04	k: 544	n:770000
Cons ci ratio: 3.025781e-02	ci left: 2.100960e-02	ci right 2.165635e-02	k: 16425	n:770000
KS ci ratio: 8.556775e-02	ci left: 2.601843e-03	ci right 2.835689e-03	k: 2092	n:770000
RGPD4   770000 perm   452 sec   (1703 perm/sec)   p_kst 2.716883e-03   p_cons 2.133117e-02   p_joint 7.064935e-04

Joint ci ratio: 1.675482e-01	ci left: 6.425265e-04	ci right 7.612323e-04	k: 546	n:780000
Cons ci ratio: 3.005430e-02	ci left: 2.102399e-02	ci right 2.166675e-02	k: 16648	n:780000
KS ci ratio: 8.506137e-02	ci left: 2.599854e-03	ci right 2.832069e-03	k: 2117	n:780000
RGPD4   780000 perm   461 sec   (1692 perm/sec)   p_kst 2.714103e-03   p_cons 2.134359e-02   p_joint 7.000000e-04

Joint ci ratio: 1.666369e-01	ci left: 6.416706e-04	ci right 7.595087e-04	k: 552	n:790000
Cons ci ratio: 2.986297e-02	ci left: 2.102672e-02	ci right 2.166540e-02	k: 16862	n:790000
KS ci ratio: 8.446513e-02	ci left: 2.604114e-03	ci right 2.834999e-03	k: 2147	n:790000
RGPD4   790000 perm   470 sec   (1682 perm/sec)   p_kst 2.717722e-03   p_cons 2.134430e-02   p_joint 6.987342e-04

Joint ci ratio: 1.657403e-01	ci left: 6.408378e-04	ci right 7.578266e-04	k: 558	n:800000
Cons ci ratio: 2.967526e-02	ci left: 2.102940e-02	ci right 2.166408e-02	k: 17076	n:800000
KS ci ratio: 8.407500e-02	ci left: 2.596036e-03	ci right 2.825089e-03	k: 2167	n:800000
RGPD4   800000 perm   478 sec   (1672 perm/sec)   p_kst 2.708750e-03   p_cons 2.134500e-02   p_joint 6.975000e-04

Joint ci ratio: 1.663376e-01	ci left: 6.281928e-04	ci right 7.433278e-04	k: 554	n:810000
Cons ci ratio: 2.948669e-02	ci left: 2.103815e-02	ci right 2.166899e-02	k: 17295	n:810000
KS ci ratio: 8.353724e-02	ci left: 2.597829e-03	ci right 2.825503e-03	k: 2195	n:810000
RGPD4   810000 perm   487 sec   (1663 perm/sec)   p_kst 2.709877e-03   p_cons 2.135185e-02   p_joint 6.839506e-04

Joint ci ratio: 1.750791e-01	ci left: 5.574881e-04	ci right 6.656025e-04	k: 500	n:820000
Cons ci ratio: 2.931107e-02	ci left: 2.103338e-02	ci right 2.166026e-02	k: 17503	n:820000
KS ci ratio: 8.302839e-02	ci left: 2.598389e-03	ci right 2.824658e-03	k: 2222	n:820000
RGPD4   820000 perm   496 sec   (1654 perm/sec)   p_kst 2.709756e-03   p_cons 2.134512e-02   p_joint 6.097561e-04

Joint ci ratio: 1.764954e-01	ci left: 5.415565e-04	ci right 6.475215e-04	k: 492	n:830000
Cons ci ratio: 2.913603e-02	ci left: 2.103232e-02	ci right 2.165536e-02	k: 17714	n:830000
KS ci ratio: 8.254711e-02	ci left: 2.597760e-03	ci right 2.822600e-03	k: 2248	n:830000
RGPD4   830000 perm   505 sec   (1645 perm/sec)   p_kst 2.708434e-03   p_cons 2.134217e-02   p_joint 5.927711e-04

Joint ci ratio: 1.775806e-01	ci left: 5.282827e-04	ci right 6.323542e-04	k: 486	n:840000
Cons ci ratio: 2.895997e-02	ci left: 2.103721e-02	ci right 2.165657e-02	k: 17930	n:840000
KS ci ratio: 8.218285e-02	ci left: 2.590153e-03	ci right 2.813298e-03	k: 2268	n:840000
RGPD4   840000 perm   513 sec   (1636 perm/sec)   p_kst 2.700000e-03   p_cons 2.134524e-02   p_joint 5.785714e-04

Joint ci ratio: 1.768559e-01	ci left: 5.265647e-04	ci right 6.298293e-04	k: 490	n:850000
Cons ci ratio: 2.877329e-02	ci left: 2.106186e-02	ci right 2.167788e-02	k: 18163	n:850000
KS ci ratio: 8.166255e-02	ci left: 2.593100e-03	ci right 2.815017e-03	k: 2297	n:850000
RGPD4   850000 perm   522 sec   (1627 perm/sec)   p_kst 2.702353e-03   p_cons 2.136824e-02   p_joint 5.764706e-04

Joint ci ratio: 1.757851e-01	ci left: 5.271108e-04	ci right 6.297900e-04	k: 496	n:860000
Cons ci ratio: 2.859891e-02	ci left: 2.107324e-02	ci right 2.168580e-02	k: 18385	n:860000
KS ci ratio: 8.123957e-02	ci left: 2.590286e-03	ci right 2.810759e-03	k: 2321	n:860000
RGPD4   860000 perm   532 sec   (1616 perm/sec)   p_kst 2.698837e-03   p_cons 2.137791e-02   p_joint 5.767442e-04

Joint ci ratio: 1.485277e-01	ci left: 7.405767e-04	ci right 8.604883e-04	k: 695	n:870000
Cons ci ratio: 2.842610e-02	ci left: 2.108666e-02	ci right 2.169584e-02	k: 18609	n:870000
KS ci ratio: 8.075409e-02	ci left: 2.592045e-03	ci right 2.811287e-03	k: 2349	n:870000
RGPD4   870000 perm   541 sec   (1607 perm/sec)   p_kst 2.700000e-03   p_cons 2.138966e-02   p_joint 7.988506e-04

Joint ci ratio: 1.470555e-01	ci left: 7.474821e-04	ci right 8.672068e-04	k: 709	n:880000
Cons ci ratio: 2.826559e-02	ci left: 2.108624e-02	ci right 2.169192e-02	k: 18821	n:880000
KS ci ratio: 8.020960e-02	ci left: 2.598222e-03	ci right 2.816436e-03	k: 2381	n:880000
RGPD4   880000 perm   551 sec   (1598 perm/sec)   p_kst 2.705682e-03   p_cons 2.138750e-02   p_joint 8.056818e-04

Joint ci ratio: 1.461322e-01	ci left: 7.488249e-04	ci right 8.679459e-04	k: 718	n:890000
Cons ci ratio: 2.810551e-02	ci left: 2.108919e-02	ci right 2.169146e-02	k: 19036	n:890000
KS ci ratio: 7.985863e-02	ci left: 2.592151e-03	ci right 2.808859e-03	k: 2402	n:890000
RGPD4   890000 perm   560 sec   (1589 perm/sec)   p_kst 2.698876e-03   p_cons 2.138876e-02   p_joint 8.067416e-04

Joint ci ratio: 1.458287e-01	ci left: 7.437161e-04	ci right 8.617572e-04	k: 721	n:900000
Cons ci ratio: 2.794960e-02	ci left: 2.108987e-02	ci right 2.168877e-02	k: 19249	n:900000
KS ci ratio: 7.943012e-02	ci left: 2.591663e-03	ci right 2.807113e-03	k: 2428	n:900000
RGPD4   900000 perm   570 sec   (1580 perm/sec)   p_kst 2.697778e-03   p_cons 2.138778e-02   p_joint 8.011111e-04

Joint ci ratio: 1.453266e-01	ci left: 7.408376e-04	ci right 8.579819e-04	k: 726	n:910000
Cons ci ratio: 2.782548e-02	ci left: 2.104689e-02	ci right 2.164187e-02	k: 19422	n:910000
KS ci ratio: 7.904073e-02	ci left: 2.589034e-03	ci right 2.803162e-03	k: 2452	n:910000
RGPD4   910000 perm   579 sec   (1572 perm/sec)   p_kst 2.694505e-03   p_cons 2.134286e-02   p_joint 7.978022e-04

Joint ci ratio: 1.479999e-01	ci left: 7.055602e-04	ci right 8.193601e-04	k: 700	n:920000
Cons ci ratio: 2.767416e-02	ci left: 2.104804e-02	ci right 2.163977e-02	k: 19635	n:920000
KS ci ratio: 7.846665e-02	ci left: 2.599253e-03	ci right 2.812593e-03	k: 2488	n:920000
RGPD4   920000 perm   589 sec   (1563 perm/sec)   p_kst 2.704348e-03   p_cons 2.134239e-02   p_joint 7.608696e-04

Joint ci ratio: 1.504917e-01	ci left: 6.741650e-04	ci right 7.848968e-04	k: 677	n:930000
Cons ci ratio: 2.755011e-02	ci left: 2.101178e-02	ci right 2.159980e-02	k: 19813	n:930000
KS ci ratio: 7.795135e-02	ci left: 2.606094e-03	ci right 2.818528e-03	k: 2521	n:930000
RGPD4   930000 perm   599 sec   (1553 perm/sec)   p_kst 2.710753e-03   p_cons 2.130430e-02   p_joint 7.279570e-04

Joint ci ratio: 1.498303e-01	ci left: 6.731362e-04	ci right 7.831695e-04	k: 683	n:940000
Cons ci ratio: 2.740391e-02	ci left: 2.101224e-02	ci right 2.159710e-02	k: 20025	n:940000
KS ci ratio: 7.749170e-02	ci left: 2.609664e-03	ci right 2.821078e-03	k: 2551	n:940000
RGPD4   940000 perm   609 sec   (1544 perm/sec)   p_kst 2.713830e-03   p_cons 2.130319e-02   p_joint 7.265957e-04

Joint ci ratio: 1.492859e-01	ci left: 6.711167e-04	ci right 7.803857e-04	k: 688	n:950000
Cons ci ratio: 2.725795e-02	ci left: 2.101583e-02	ci right 2.159762e-02	k: 20240	n:950000
KS ci ratio: 7.707002e-02	ci left: 2.611098e-03	ci right 2.821426e-03	k: 2579	n:950000
RGPD4   950000 perm   619 sec   (1535 perm/sec)   p_kst 2.714737e-03   p_cons 2.130526e-02   p_joint 7.242105e-04

Joint ci ratio: 1.485333e-01	ci left: 6.711459e-04	ci right 7.798198e-04	k: 695	n:960000
Cons ci ratio: 2.711769e-02	ci left: 2.101417e-02	ci right 2.159289e-02	k: 20450	n:960000
KS ci ratio: 7.664042e-02	ci left: 2.613527e-03	ci right 2.822824e-03	k: 2608	n:960000
RGPD4   960000 perm   629 sec   (1526 perm/sec)   p_kst 2.716667e-03   p_cons 2.130208e-02   p_joint 7.239583e-04

Joint ci ratio: 1.483207e-01	ci left: 6.662120e-04	ci right 7.739190e-04	k: 697	n:970000
Cons ci ratio: 2.698891e-02	ci left: 2.099823e-02	ci right 2.157371e-02	k: 20646	n:970000
KS ci ratio: 7.610230e-02	ci left: 2.624000e-03	ci right 2.832595e-03	k: 2645	n:970000
RGPD4   970000 perm   640 sec   (1517 perm/sec)   p_kst 2.726804e-03   p_cons 2.128454e-02   p_joint 7.185567e-04

Joint ci ratio: 1.482151e-01	ci left: 6.603963e-04	ci right 7.670803e-04	k: 698	n:980000
Cons ci ratio: 2.686261e-02	ci left: 2.098160e-02	ci right 2.155389e-02	k: 20841	n:980000
KS ci ratio: 7.570278e-02	ci left: 2.625254e-03	ci right 2.832805e-03	k: 2673	n:980000
RGPD4   980000 perm   650 sec   (1508 perm/sec)   p_kst 2.727551e-03   p_cons 2.126633e-02   p_joint 7.122449e-04

Joint ci ratio: 1.472699e-01	ci left: 6.624805e-04	ci right 7.687586e-04	k: 707	n:990000
Cons ci ratio: 2.671796e-02	ci left: 2.099642e-02	ci right 2.156599e-02	k: 21067	n:990000
KS ci ratio: 7.530949e-02	ci left: 2.626485e-03	ci right 2.833007e-03	k: 2701	n:990000
RGPD4   990000 perm   660 sec   (1500 perm/sec)   p_kst 2.728283e-03   p_cons 2.127980e-02   p_joint 7.141414e-04

Joint ci ratio: 1.465472e-01	ci left: 6.625984e-04	ci right 7.683282e-04	k: 714	n:1000000
Cons ci ratio: 2.657498e-02	ci left: 2.101194e-02	ci right 2.157884e-02	k: 21294	n:1000000
KS ci ratio: 7.494980e-02	ci left: 2.625732e-03	ci right 2.831165e-03	k: 2727	n:1000000
RGPD4   1000000 perm   670 sec   (1492 perm/sec)   p_kst 2.727000e-03   p_cons 2.129400e-02   p_joint 7.140000e-04

Joint ci ratio: 1.468563e-01	ci left: 6.531765e-04	ci right 7.576420e-04	k: 711	n:1010000
Cons ci ratio: 2.642737e-02	ci left: 2.103799e-02	ci right 2.160239e-02	k: 21532	n:1010000
KS ci ratio: 7.473139e-02	ci left: 2.615279e-03	ci right 2.819273e-03	k: 2743	n:1010000
RGPD4   1010000 perm   681 sec   (1484 perm/sec)   p_kst 2.715842e-03   p_cons 2.131881e-02   p_joint 7.039604e-04

Joint ci ratio: 1.461397e-01	ci left: 6.533841e-04	ci right 7.573283e-04	k: 718	n:1020000
Cons ci ratio: 2.628528e-02	ci left: 2.105866e-02	ci right 2.162053e-02	k: 21765	n:1020000
KS ci ratio: 7.446079e-02	ci left: 2.608881e-03	ci right 2.811607e-03	k: 2763	n:1020000
RGPD4   1020000 perm   691 sec   (1476 perm/sec)   p_kst 2.708824e-03   p_cons 2.133824e-02   p_joint 7.039216e-04

Joint ci ratio: 1.454335e-01	ci left: 6.535887e-04	ci right 7.570194e-04	k: 725	n:1030000
Cons ci ratio: 2.614971e-02	ci left: 2.107219e-02	ci right 2.163148e-02	k: 21991	n:1030000
KS ci ratio: 7.419310e-02	ci left: 2.602608e-03	ci right 2.804088e-03	k: 2783	n:1030000
RGPD4   1030000 perm   702 sec   (1468 perm/sec)   p_kst 2.701942e-03   p_cons 2.135049e-02   p_joint 7.038835e-04

Joint ci ratio: 1.457356e-01	ci left: 6.445245e-04	ci right 7.467510e-04	k: 722	n:1040000
Cons ci ratio: 2.601921e-02	ci left: 2.108069e-02	ci right 2.163737e-02	k: 22212	n:1040000
KS ci ratio: 7.386228e-02	ci left: 2.601176e-03	ci right 2.801609e-03	k: 2808	n:1040000
RGPD4   1040000 perm   712 sec   (1461 perm/sec)   p_kst 2.700000e-03   p_cons 2.135769e-02   p_joint 6.942308e-04

Joint ci ratio: 1.460396e-01	ci left: 6.356331e-04	ci right 7.366780e-04	k: 719	n:1050000
Cons ci ratio: 2.590716e-02	ci left: 2.106253e-02	ci right 2.161630e-02	k: 22405	n:1050000
KS ci ratio: 7.356187e-02	ci left: 2.597904e-03	ci right 2.797236e-03	k: 2831	n:1050000
RGPD4   1050000 perm   723 sec   (1452 perm/sec)   p_kst 2.696190e-03   p_cons 2.133810e-02   p_joint 6.847619e-04

Joint ci ratio: 1.454349e-01	ci left: 6.350905e-04	ci right 7.355949e-04	k: 725	n:1060000
Cons ci ratio: 2.579189e-02	ci left: 2.105223e-02	ci right 2.160322e-02	k: 22606	n:1060000
KS ci ratio: 7.317521e-02	ci left: 2.601178e-03	ci right 2.799668e-03	k: 2861	n:1060000
RGPD4   1060000 perm   734 sec   (1444 perm/sec)   p_kst 2.699057e-03   p_cons 2.132642e-02   p_joint 6.839623e-04

Joint ci ratio: 1.448377e-01	ci left: 6.345589e-04	ci right 7.345311e-04	k: 731	n:1070000
Cons ci ratio: 2.565975e-02	ci left: 2.107184e-02	ci right 2.162048e-02	k: 22839	n:1070000
KS ci ratio: 7.295919e-02	ci left: 2.592465e-03	ci right 2.789681e-03	k: 2878	n:1070000
RGPD4   1070000 perm   745 sec   (1437 perm/sec)   p_kst 2.689720e-03   p_cons 2.134486e-02   p_joint 6.831776e-04

Joint ci ratio: 1.442478e-01	ci left: 6.340380e-04	ci right 7.334863e-04	k: 737	n:1080000
Cons ci ratio: 2.553585e-02	ci left: 2.108097e-02	ci right 2.162716e-02	k: 23061	n:1080000
KS ci ratio: 7.265707e-02	ci left: 2.590279e-03	ci right 2.786478e-03	k: 2902	n:1080000
RGPD4   1080000 perm   756 sec   (1429 perm/sec)   p_kst 2.687037e-03   p_cons 2.135278e-02   p_joint 6.824074e-04

Joint ci ratio: 1.432801e-01	ci left: 6.370655e-04	ci right 7.362610e-04	k: 747	n:1090000
Cons ci ratio: 2.541484e-02	ci left: 2.108811e-02	ci right 2.163186e-02	k: 23281	n:1090000
KS ci ratio: 7.232152e-02	ci left: 2.590836e-03	ci right 2.786133e-03	k: 2929	n:1090000
RGPD4   1090000 perm   767 sec   (1421 perm/sec)   p_kst 2.687156e-03   p_cons 2.135872e-02   p_joint 6.853211e-04

Joint ci ratio: 1.427090e-01	ci left: 6.365334e-04	ci right 7.352173e-04	k: 753	n:1100000
Cons ci ratio: 2.530268e-02	ci left: 2.108339e-02	ci right 2.162459e-02	k: 23488	n:1100000
KS ci ratio: 7.197838e-02	ci left: 2.592279e-03	ci right 2.786718e-03	k: 2957	n:1100000
RGPD4   1100000 perm   778 sec   (1413 perm/sec)   p_kst 2.688182e-03   p_cons 2.135273e-02   p_joint 6.845455e-04

Joint ci ratio: 1.419578e-01	ci left: 6.377495e-04	ci right 7.360574e-04	k: 761	n:1110000
Cons ci ratio: 2.518819e-02	ci left: 2.108503e-02	ci right 2.162378e-02	k: 23702	n:1110000
KS ci ratio: 7.176066e-02	ci left: 2.584849e-03	ci right 2.778121e-03	k: 2975	n:1110000
RGPD4   1110000 perm   789 sec   (1406 perm/sec)   p_kst 2.680180e-03   p_cons 2.135315e-02   p_joint 6.855856e-04

Joint ci ratio: 1.414022e-01	ci left: 6.372225e-04	ci right 7.350324e-04	k: 767	n:1120000
Cons ci ratio: 2.507686e-02	ci left: 2.108398e-02	ci right 2.162029e-02	k: 23913	n:1120000
KS ci ratio: 7.147313e-02	ci left: 2.582815e-03	ci right 2.775128e-03	k: 2999	n:1120000
RGPD4   1120000 perm   800 sec   (1400 perm/sec)   p_kst 2.677679e-03   p_cons 2.135089e-02   p_joint 6.848214e-04

Joint ci ratio: 1.433778e-01	ci left: 6.136608e-04	ci right 7.092827e-04	k: 746	n:1130000
Cons ci ratio: 2.496857e-02	ci left: 2.108031e-02	ci right 2.161418e-02	k: 24121	n:1130000
KS ci ratio: 7.102437e-02	ci left: 2.592988e-03	ci right 2.784797e-03	k: 3037	n:1130000
RGPD4   1130000 perm   811 sec   (1393 perm/sec)   p_kst 2.687611e-03   p_cons 2.134602e-02   p_joint 6.601770e-04

Joint ci ratio: 1.429005e-01	ci left: 6.125067e-04	ci right 7.076039e-04	k: 751	n:1140000
Cons ci ratio: 2.486794e-02	ci left: 2.106625e-02	ci right 2.159759e-02	k: 24317	n:1140000
KS ci ratio: 7.075716e-02	ci left: 2.590060e-03	ci right 2.780902e-03	k: 3060	n:1140000
RGPD4   1140000 perm   822 sec   (1386 perm/sec)   p_kst 2.684211e-03   p_cons 2.133070e-02   p_joint 6.587719e-04

Joint ci ratio: 1.438612e-01	ci left: 5.987965e-04	ci right 6.924438e-04	k: 741	n:1150000
Cons ci ratio: 2.475304e-02	ci left: 2.107837e-02	ci right 2.160752e-02	k: 24543	n:1150000
KS ci ratio: 7.052734e-02	ci left: 2.584622e-03	ci right 2.774419e-03	k: 3080	n:1150000
RGPD4   1150000 perm   834 sec   (1379 perm/sec)   p_kst 2.678261e-03   p_cons 2.134174e-02   p_joint 6.443478e-04

Joint ci ratio: 1.431874e-01	ci left: 5.994523e-04	ci right 6.927255e-04	k: 748	n:1160000
Cons ci ratio: 2.464532e-02	ci left: 2.108086e-02	ci right 2.160774e-02	k: 24758	n:1160000
KS ci ratio: 7.027702e-02	ci left: 2.580972e-03	ci right 2.769801e-03	k: 3102	n:1160000
RGPD4   1160000 perm   845 sec   (1373 perm/sec)   p_kst 2.674138e-03   p_cons 2.134310e-02   p_joint 6.448276e-04

Joint ci ratio: 1.426173e-01	ci left: 5.992736e-04	ci right 6.921162e-04	k: 754	n:1170000
Cons ci ratio: 2.453748e-02	ci left: 2.108586e-02	ci right 2.161053e-02	k: 24976	n:1170000
KS ci ratio: 7.007433e-02	ci left: 2.574027e-03	ci right 2.761782e-03	k: 3120	n:1170000
RGPD4   1170000 perm   857 sec   (1365 perm/sec)   p_kst 2.666667e-03   p_cons 2.134701e-02   p_joint 6.444444e-04

Joint ci ratio: 1.422412e-01	ci left: 5.974640e-04	ci right 6.897614e-04	k: 758	n:1180000
Cons ci ratio: 2.442114e-02	ci left: 2.110763e-02	ci right 2.163031e-02	k: 25214	n:1180000
KS ci ratio: 6.980653e-02	ci left: 2.572196e-03	ci right 2.759072e-03	k: 3144	n:1180000
RGPD4   1180000 perm   869 sec   (1358 perm/sec)   p_kst 2.664407e-03   p_cons 2.136780e-02   p_joint 6.423729e-04

Joint ci ratio: 1.417750e-01	ci left: 5.964957e-04	ci right 6.883160e-04	k: 763	n:1190000
Cons ci ratio: 2.432647e-02	ci left: 2.109480e-02	ci right 2.161510e-02	k: 25411	n:1190000
KS ci ratio: 6.951978e-02	ci left: 2.572049e-03	ci right 2.758116e-03	k: 3170	n:1190000
RGPD4   1190000 perm   880 sec   (1352 perm/sec)   p_kst 2.663866e-03   p_cons 2.135378e-02   p_joint 6.411765e-04

Joint ci ratio: 1.408560e-01	ci left: 5.995636e-04	ci right 6.912077e-04	k: 773	n:1200000
Cons ci ratio: 2.423096e-02	ci left: 2.108549e-02	ci right 2.160349e-02	k: 25612	n:1200000
KS ci ratio: 6.916065e-02	ci left: 2.577639e-03	ci right 2.763108e-03	k: 3203	n:1200000
RGPD4   1200000 perm   892 sec   (1345 perm/sec)   p_kst 2.669167e-03   p_cons 2.134333e-02   p_joint 6.441667e-04

Joint ci ratio: 1.403132e-01	ci left: 5.993928e-04	ci right 6.906282e-04	k: 779	n:1210000
Cons ci ratio: 2.412941e-02	ci left: 2.108866e-02	ci right 2.160454e-02	k: 25828	n:1210000
KS ci ratio: 6.896744e-02	ci left: 2.570955e-03	ci right 2.755406e-03	k: 3221	n:1210000
RGPD4   1210000 perm   905 sec   (1337 perm/sec)   p_kst 2.661983e-03   p_cons 2.134545e-02   p_joint 6.438017e-04

Joint ci ratio: 1.395991e-01	ci left: 6.008076e-04	ci right 6.917541e-04	k: 787	n:1220000
Cons ci ratio: 2.402723e-02	ci left: 2.109505e-02	ci right 2.160887e-02	k: 26048	n:1220000
KS ci ratio: 6.866967e-02	ci left: 2.572437e-03	ci right 2.756166e-03	k: 3249	n:1220000
RGPD4   1220000 perm   917 sec   (1331 perm/sec)   p_kst 2.663115e-03   p_cons 2.135082e-02   p_joint 6.450820e-04

Joint ci ratio: 1.434778e-01	ci left: 5.629848e-04	ci right 6.507766e-04	k: 745	n:1230000
Cons ci ratio: 2.392588e-02	ci left: 2.110214e-02	ci right 2.161394e-02	k: 26269	n:1230000
KS ci ratio: 6.843855e-02	ci left: 2.569103e-03	ci right 2.751951e-03	k: 3271	n:1230000
RGPD4   1230000 perm   929 sec   (1324 perm/sec)   p_kst 2.659350e-03   p_cons 2.135691e-02   p_joint 6.056911e-04

Joint ci ratio: 1.430948e-01	ci left: 5.615547e-04	ci right 6.488698e-04	k: 749	n:1240000
Cons ci ratio: 2.383591e-02	ci left: 2.109149e-02	ci right 2.160108e-02	k: 26468	n:1240000
KS ci ratio: 6.813720e-02	ci left: 2.571372e-03	ci right 2.753544e-03	k: 3300	n:1240000
RGPD4   1240000 perm   941 sec   (1318 perm/sec)   p_kst 2.661290e-03   p_cons 2.134516e-02   p_joint 6.040323e-04

Joint ci ratio: 1.437680e-01	ci left: 5.516630e-04	ci right 6.378783e-04	k: 742	n:1250000
Cons ci ratio: 2.374604e-02	ci left: 2.108260e-02	ci right 2.159003e-02	k: 26669	n:1250000
KS ci ratio: 6.790116e-02	ci left: 2.568888e-03	ci right 2.750229e-03	k: 3323	n:1250000
RGPD4   1250000 perm   953 sec   (1312 perm/sec)   p_kst 2.658400e-03   p_cons 2.133520e-02   p_joint 5.936000e-04

Joint ci ratio: 1.433827e-01	ci left: 5.503453e-04	ci right 6.361043e-04	k: 746	n:1260000
Cons ci ratio: 2.364909e-02	ci left: 2.108805e-02	ci right 2.159351e-02	k: 26888	n:1260000
KS ci ratio: 6.751602e-02	ci left: 2.578148e-03	ci right 2.759070e-03	k: 3361	n:1260000
RGPD4   1260000 perm   965 sec   (1305 perm/sec)   p_kst 2.667460e-03   p_cons 2.133968e-02   p_joint 5.920635e-04

Joint ci ratio: 1.430958e-01	ci left: 5.482894e-04	ci right 6.335425e-04	k: 749	n:1270000
Cons ci ratio: 2.356931e-02	ci left: 2.106525e-02	ci right 2.156844e-02	k: 27071	n:1270000
KS ci ratio: 6.731627e-02	ci left: 2.573330e-03	ci right 2.753359e-03	k: 3381	n:1270000
RGPD4   1270000 perm   978 sec   (1299 perm/sec)   p_kst 2.662205e-03   p_cons 2.131575e-02   p_joint 5.897638e-04

Joint ci ratio: 1.426213e-01	ci left: 5.477725e-04	ci right 6.326388e-04	k: 754	n:1280000
Cons ci ratio: 2.346571e-02	ci left: 2.108630e-02	ci right 2.158775e-02	k: 27310	n:1280000
KS ci ratio: 6.702944e-02	ci left: 2.575502e-03	ci right 2.754885e-03	k: 3410	n:1280000
RGPD4   1280000 perm   990 sec   (1293 perm/sec)   p_kst 2.664063e-03   p_cons 2.133594e-02   p_joint 5.890625e-04

Joint ci ratio: 1.247905e-01	ci left: 7.166364e-04	ci right 8.127596e-04	k: 985	n:1290000
Cons ci ratio: 2.337171e-02	ci left: 2.109238e-02	ci right 2.159194e-02	k: 27530	n:1290000
KS ci ratio: 6.674625e-02	ci left: 2.577642e-03	ci right 2.756386e-03	k: 3439	n:1290000
RGPD4   1290000 perm   1003 sec   (1287 perm/sec)   p_kst 2.665891e-03   p_cons 2.134109e-02   p_joint 7.635659e-04

Joint ci ratio: 1.241000e-01	ci left: 7.193220e-04	ci right 8.152324e-04	k: 996	n:1300000
Cons ci ratio: 2.327796e-02	ci left: 2.109991e-02	ci right 2.159761e-02	k: 27752	n:1300000
KS ci ratio: 6.650507e-02	ci left: 2.576724e-03	ci right 2.754734e-03	k: 3464	n:1300000
RGPD4   1300000 perm   1015 sec   (1281 perm/sec)   p_kst 2.664615e-03   p_cons 2.134769e-02   p_joint 7.661538e-04

Joint ci ratio: 1.264052e-01	ci left: 6.872104e-04	ci right 7.806687e-04	k: 960	n:1310000
Cons ci ratio: 2.318322e-02	ci left: 2.111112e-02	ci right 2.160703e-02	k: 27979	n:1310000
KS ci ratio: 6.626648e-02	ci left: 2.575821e-03	ci right 2.753106e-03	k: 3489	n:1310000
RGPD4   1310000 perm   1027 sec   (1276 perm/sec)   p_kst 2.663359e-03   p_cons 2.135802e-02   p_joint 7.328244e-04

Joint ci ratio: 1.259473e-01	ci left: 6.871399e-04	ci right 7.802248e-04	k: 967	n:1320000
Cons ci ratio: 2.309172e-02	ci left: 2.111840e-02	ci right 2.161250e-02	k: 28201	n:1320000
KS ci ratio: 6.607758e-02	ci left: 2.571208e-03	ci right 2.747652e-03	k: 3509	n:1320000
RGPD4   1320000 perm   1039 sec   (1270 perm/sec)   p_kst 2.658333e-03   p_cons 2.136439e-02   p_joint 7.325758e-04

Joint ci ratio: 1.278111e-01	ci left: 6.615884e-04	ci right 7.526387e-04	k: 939	n:1330000
Cons ci ratio: 2.302075e-02	ci left: 2.109043e-02	ci right 2.158234e-02	k: 28376	n:1330000
KS ci ratio: 6.587159e-02	ci left: 2.568144e-03	ci right 2.743807e-03	k: 3531	n:1330000
RGPD4   1330000 perm   1052 sec   (1265 perm/sec)   p_kst 2.654887e-03   p_cons 2.133534e-02   p_joint 7.060150e-04

Joint ci ratio: 1.274726e-01	ci left: 6.602633e-04	ci right 7.508725e-04	k: 944	n:1340000
Cons ci ratio: 2.293197e-02	ci left: 2.109627e-02	ci right 2.158640e-02	k: 28596	n:1340000
KS ci ratio: 6.562124e-02	ci left: 2.568797e-03	ci right 2.743811e-03	k: 3558	n:1340000
RGPD4   1340000 perm   1064 sec   (1259 perm/sec)   p_kst 2.655224e-03   p_cons 2.134030e-02   p_joint 7.044776e-04

Joint ci ratio: 1.272038e-01	ci left: 6.582410e-04	ci right 7.483678e-04	k: 948	n:1350000
Cons ci ratio: 2.284218e-02	ci left: 2.110572e-02	ci right 2.159412e-02	k: 28821	n:1350000
KS ci ratio: 6.536458e-02	ci left: 2.570170e-03	ci right 2.744567e-03	k: 3586	n:1350000
RGPD4   1350000 perm   1077 sec   (1254 perm/sec)   p_kst 2.656296e-03   p_cons 2.134889e-02   p_joint 7.022222e-04

Joint ci ratio: 1.268036e-01	ci left: 6.576726e-04	ci right 7.474170e-04	k: 954	n:1360000
Cons ci ratio: 2.275425e-02	ci left: 2.111357e-02	ci right 2.160024e-02	k: 29044	n:1360000
KS ci ratio: 6.508384e-02	ci left: 2.573694e-03	ci right 2.747552e-03	k: 3617	n:1360000
RGPD4   1360000 perm   1089 sec   (1248 perm/sec)   p_kst 2.659559e-03   p_cons 2.135588e-02   p_joint 7.014706e-04

Joint ci ratio: 1.264731e-01	ci left: 6.564061e-04	ci right 7.457266e-04	k: 959	n:1370000
Cons ci ratio: 2.267523e-02	ci left: 2.110679e-02	ci right 2.159159e-02	k: 29247	n:1370000
KS ci ratio: 6.480669e-02	ci left: 2.577169e-03	ci right 2.750492e-03	k: 3648	n:1370000
RGPD4   1370000 perm   1102 sec   (1243 perm/sec)   p_kst 2.662774e-03   p_cons 2.134818e-02   p_joint 7.000000e-04

Joint ci ratio: 1.259493e-01	ci left: 6.572636e-04	ci right 7.463028e-04	k: 967	n:1380000
Cons ci ratio: 2.259547e-02	ci left: 2.110299e-02	ci right 2.158598e-02	k: 29454	n:1380000
KS ci ratio: 6.463880e-02	ci left: 2.572038e-03	ci right 2.744552e-03	k: 3667	n:1380000
RGPD4   1380000 perm   1115 sec   (1237 perm/sec)   p_kst 2.657246e-03   p_cons 2.134348e-02   p_joint 7.007246e-04

Joint ci ratio: 1.263421e-01	ci left: 6.483545e-04	ci right 7.364812e-04	k: 961	n:1390000
Cons ci ratio: 2.251422e-02	ci left: 2.110354e-02	ci right 2.158479e-02	k: 29667	n:1390000
KS ci ratio: 6.444593e-02	ci left: 2.569106e-03	ci right 2.740890e-03	k: 3689	n:1390000
RGPD4   1390000 perm   1128 sec   (1232 perm/sec)   p_kst 2.653957e-03   p_cons 2.134317e-02   p_joint 6.913669e-04

Joint ci ratio: 1.260804e-01	ci left: 6.464903e-04	ci right 7.341680e-04	k: 965	n:1400000
Cons ci ratio: 2.243038e-02	ci left: 2.111048e-02	ci right 2.159007e-02	k: 29889	n:1400000
KS ci ratio: 6.423743e-02	ci left: 2.567623e-03	ci right 2.738731e-03	k: 3713	n:1400000
RGPD4   1400000 perm   1141 sec   (1227 perm/sec)   p_kst 2.652143e-03   p_cons 2.134929e-02   p_joint 6.892857e-04

Joint ci ratio: 1.256907e-01	ci left: 6.460266e-04	ci right 7.333504e-04	k: 971	n:1410000
Cons ci ratio: 2.234710e-02	ci left: 2.111803e-02	ci right 2.159599e-02	k: 30112	n:1410000
KS ci ratio: 6.400519e-02	ci left: 2.568254e-03	ci right 2.738763e-03	k: 3740	n:1410000
RGPD4   1410000 perm   1154 sec   (1222 perm/sec)   p_kst 2.652482e-03   p_cons 2.135603e-02   p_joint 6.886525e-04

Joint ci ratio: 1.251127e-01	ci left: 6.476164e-04	ci right 7.347227e-04	k: 980	n:1420000
Cons ci ratio: 2.225949e-02	ci left: 2.113529e-02	ci right 2.161174e-02	k: 30349	n:1420000
KS ci ratio: 6.375000e-02	ci left: 2.570958e-03	ci right 2.740940e-03	k: 3770	n:1420000
RGPD4   1420000 perm   1167 sec   (1216 perm/sec)   p_kst 2.654930e-03   p_cons 2.137254e-02   p_joint 6.901408e-04

Joint ci ratio: 1.245426e-01	ci left: 6.491848e-04	ci right 7.360748e-04	k: 989	n:1430000
Cons ci ratio: 2.217364e-02	ci left: 2.115091e-02	ci right 2.162585e-02	k: 30584	n:1430000
KS ci ratio: 6.354816e-02	ci left: 2.569495e-03	ci right 2.738823e-03	k: 3794	n:1430000
RGPD4   1430000 perm   1181 sec   (1211 perm/sec)   p_kst 2.653147e-03   p_cons 2.138741e-02   p_joint 6.916084e-04

Joint ci ratio: 1.241669e-01	ci left: 6.487136e-04	ci right 7.352594e-04	k: 995	n:1440000
Cons ci ratio: 2.210013e-02	ci left: 2.114492e-02	ci right 2.161812e-02	k: 30788	n:1440000
KS ci ratio: 6.329009e-02	ci left: 2.572838e-03	ci right 2.741672e-03	k: 3825	n:1440000
RGPD4   1440000 perm   1194 sec   (1206 perm/sec)   p_kst 2.656250e-03   p_cons 2.138056e-02   p_joint 6.909722e-04

Joint ci ratio: 1.239185e-01	ci left: 6.469127e-04	ci right 7.330329e-04	k: 999	n:1450000
Cons ci ratio: 2.202518e-02	ci left: 2.114312e-02	ci right 2.161466e-02	k: 30998	n:1450000
KS ci ratio: 6.306794e-02	ci left: 2.573421e-03	ci right 2.741679e-03	k: 3852	n:1450000
RGPD4   1450000 perm   1208 sec   (1200 perm/sec)   p_kst 2.656552e-03   p_cons 2.137793e-02   p_joint 6.889655e-04

Joint ci ratio: 1.241052e-01	ci left: 6.404906e-04	ci right 7.258938e-04	k: 996	n:1460000
Cons ci ratio: 2.194595e-02	ci left: 2.115088e-02	ci right 2.162088e-02	k: 31222	n:1460000
KS ci ratio: 6.288062e-02	ci left: 2.571300e-03	ci right 2.738902e-03	k: 3875	n:1460000
RGPD4   1460000 perm   1222 sec   (1195 perm/sec)   p_kst 2.654110e-03   p_cons 2.138493e-02   p_joint 6.821918e-04

Joint ci ratio: 1.150994e-01	ci left: 7.430475e-04	ci right 8.344480e-04	k: 1158	n:1470000
Cons ci ratio: 2.186899e-02	ci left: 2.115584e-02	ci right 2.162428e-02	k: 31442	n:1470000
KS ci ratio: 6.267884e-02	ci left: 2.570548e-03	ci right 2.737544e-03	k: 3900	n:1470000
RGPD4   1470000 perm   1235 sec   (1190 perm/sec)   p_kst 2.653061e-03   p_cons 2.138912e-02   p_joint 7.877551e-04

Joint ci ratio: 1.148027e-01	ci left: 7.419644e-04	ci right 8.329804e-04	k: 1164	n:1480000
Cons ci ratio: 2.179601e-02	ci left: 2.115468e-02	ci right 2.162152e-02	k: 31653	n:1480000
KS ci ratio: 6.249495e-02	ci left: 2.568476e-03	ci right 2.734831e-03	k: 3923	n:1480000
RGPD4   1480000 perm   1249 sec   (1185 perm/sec)   p_kst 2.650676e-03   p_cons 2.138716e-02   p_joint 7.864865e-04

Joint ci ratio: 1.144593e-01	ci left: 7.415480e-04	ci right 8.322226e-04	k: 1171	n:1490000
Cons ci ratio: 2.172758e-02	ci left: 2.114620e-02	ci right 2.161136e-02	k: 31853	n:1490000
KS ci ratio: 6.233643e-02	ci left: 2.564451e-03	ci right 2.730109e-03	k: 3943	n:1490000
RGPD4   1490000 perm   1263 sec   (1180 perm/sec)   p_kst 2.646309e-03   p_cons 2.137785e-02   p_joint 7.859060e-04

Joint ci ratio: 1.142161e-01	ci left: 7.398423e-04	ci right 8.301031e-04	k: 1176	n:1500000
Cons ci ratio: 2.166186e-02	ci left: 2.113386e-02	ci right 2.159732e-02	k: 32047	n:1500000
KS ci ratio: 6.219484e-02	ci left: 2.559168e-03	ci right 2.724095e-03	k: 3961	n:1500000
RGPD4   1500000 perm   1277 sec   (1175 perm/sec)   p_kst 2.640667e-03   p_cons 2.136467e-02   p_joint 7.840000e-04

Joint ci ratio: 1.140226e-01	ci left: 7.375161e-04	ci right 8.273304e-04	k: 1180	n:1510000
Cons ci ratio: 2.159263e-02	ci left: 2.112959e-02	ci right 2.159146e-02	k: 32253	n:1510000
KS ci ratio: 6.204640e-02	ci left: 2.554607e-03	ci right 2.718833e-03	k: 3980	n:1510000
RGPD4   1510000 perm   1291 sec   (1169 perm/sec)   p_kst 2.635762e-03   p_cons 2.135960e-02   p_joint 7.814570e-04

Joint ci ratio: 1.134000e-01	ci left: 7.409734e-04	ci right 8.306831e-04	k: 1193	n:1520000
Cons ci ratio: 2.152169e-02	ci left: 2.112995e-02	ci right 2.159030e-02	k: 32466	n:1520000
KS ci ratio: 6.182931e-02	ci left: 2.555936e-03	ci right 2.719652e-03	k: 4008	n:1520000
RGPD4   1520000 perm   1306 sec   (1164 perm/sec)   p_kst 2.636842e-03   p_cons 2.135921e-02   p_joint 7.848684e-04

Joint ci ratio: 1.133528e-01	ci left: 7.367654e-04	ci right 8.259261e-04	k: 1194	n:1530000
Cons ci ratio: 2.145010e-02	ci left: 2.113292e-02	ci right 2.159177e-02	k: 32683	n:1530000
KS ci ratio: 6.162980e-02	ci left: 2.555962e-03	ci right 2.719132e-03	k: 4034	n:1530000
RGPD4   1530000 perm   1320 sec   (1159 perm/sec)   p_kst 2.636601e-03   p_cons 2.136144e-02   p_joint 7.803922e-04

Joint ci ratio: 1.130694e-01	ci left: 7.357670e-04	ci right 8.245693e-04	k: 1200	n:1540000
Cons ci ratio: 2.137557e-02	ci left: 2.114295e-02	ci right 2.160041e-02	k: 32911	n:1540000
KS ci ratio: 6.140946e-02	ci left: 2.557906e-03	ci right 2.720596e-03	k: 4063	n:1540000
RGPD4   1540000 perm   1334 sec   (1154 perm/sec)   p_kst 2.638312e-03   p_cons 2.137078e-02   p_joint 7.792208e-04

Joint ci ratio: 1.128348e-01	ci left: 7.341548e-04	ci right 8.225665e-04	k: 1205	n:1550000
Cons ci ratio: 2.130083e-02	ci left: 2.115478e-02	ci right 2.161088e-02	k: 33142	n:1550000
KS ci ratio: 6.128914e-02	ci left: 2.551568e-03	ci right 2.713525e-03	k: 4079	n:1550000
RGPD4   1550000 perm   1349 sec   (1149 perm/sec)   p_kst 2.631613e-03   p_cons 2.138194e-02   p_joint 7.774194e-04

Joint ci ratio: 1.124161e-01	ci left: 7.350554e-04	ci right 8.232253e-04	k: 1214	n:1560000
Cons ci ratio: 2.123076e-02	ci left: 2.115881e-02	ci right 2.161348e-02	k: 33361	n:1560000
KS ci ratio: 6.112465e-02	ci left: 2.549098e-03	ci right 2.710449e-03	k: 4101	n:1560000
RGPD4   1560000 perm   1363 sec   (1144 perm/sec)   p_kst 2.628846e-03   p_cons 2.138526e-02   p_joint 7.782051e-04

Joint ci ratio: 1.119563e-01	ci left: 7.365642e-04	ci right 8.245298e-04	k: 1224	n:1570000
Cons ci ratio: 2.115527e-02	ci left: 2.117483e-02	ci right 2.162821e-02	k: 33599	n:1570000
KS ci ratio: 6.096147e-02	ci left: 2.546661e-03	ci right 2.707412e-03	k: 4123	n:1570000
RGPD4   1570000 perm   1378 sec   (1139 perm/sec)   p_kst 2.626115e-03   p_cons 2.140064e-02   p_joint 7.796178e-04

Joint ci ratio: 1.116832e-01	ci left: 7.355937e-04	ci right 8.232149e-04	k: 1230	n:1580000
Cons ci ratio: 2.108631e-02	ci left: 2.117932e-02	ci right 2.163130e-02	k: 33819	n:1580000
KS ci ratio: 6.078490e-02	ci left: 2.545501e-03	ci right 2.705698e-03	k: 4147	n:1580000
RGPD4   1580000 perm   1393 sec   (1134 perm/sec)   p_kst 2.624684e-03   p_cons 2.140443e-02   p_joint 7.784810e-04

Joint ci ratio: 1.134020e-01	ci left: 7.083513e-04	ci right 7.941130e-04	k: 1193	n:1590000
Cons ci ratio: 2.101518e-02	ci left: 2.118939e-02	ci right 2.164003e-02	k: 34048	n:1590000
KS ci ratio: 6.063172e-02	ci left: 2.542499e-03	ci right 2.702089e-03	k: 4168	n:1590000
RGPD4   1590000 perm   1408 sec   (1130 perm/sec)   p_kst 2.621384e-03   p_cons 2.141384e-02   p_joint 7.503145e-04

Joint ci ratio: 1.138805e-01	ci left: 6.978515e-04	ci right 7.827225e-04	k: 1183	n:1600000
Cons ci ratio: 2.095414e-02	ci left: 2.118067e-02	ci right 2.162981e-02	k: 34247	n:1600000
KS ci ratio: 6.042188e-02	ci left: 2.544459e-03	ci right 2.703600e-03	k: 4197	n:1600000
RGPD4   1600000 perm   1422 sec   (1125 perm/sec)   p_kst 2.623125e-03   p_cons 2.140437e-02   p_joint 7.393750e-04

Joint ci ratio: 1.136887e-01	ci left: 6.959308e-04	ci right 7.804160e-04	k: 1187	n:1610000
Cons ci ratio: 2.089084e-02	ci left: 2.117763e-02	ci right 2.162533e-02	k: 34455	n:1610000
KS ci ratio: 6.027858e-02	ci left: 2.540890e-03	ci right 2.699417e-03	k: 4217	n:1610000
RGPD4   1610000 perm   1437 sec   (1120 perm/sec)   p_kst 2.619255e-03   p_cons 2.140062e-02   p_joint 7.372671e-04

Joint ci ratio: 1.153528e-01	ci left: 6.712479e-04	ci right 7.540107e-04	k: 1153	n:1620000
Cons ci ratio: 2.082411e-02	ci left: 2.118262e-02	ci right 2.162897e-02	k: 34676	n:1620000
KS ci ratio: 6.001572e-02	ci left: 2.547701e-03	ci right 2.705937e-03	k: 4254	n:1620000
RGPD4   1620000 perm   1452 sec   (1116 perm/sec)   p_kst 2.625926e-03   p_cons 2.140494e-02   p_joint 7.117284e-04

Joint ci ratio: 1.147576e-01	ci left: 6.742800e-04	ci right 7.569585e-04	k: 1165	n:1630000
Cons ci ratio: 2.075864e-02	ci left: 2.118632e-02	ci right 2.163133e-02	k: 34895	n:1630000
KS ci ratio: 5.981220e-02	ci left: 2.549596e-03	ci right 2.707394e-03	k: 4283	n:1630000
RGPD4   1630000 perm   1467 sec   (1111 perm/sec)   p_kst 2.627607e-03   p_cons 2.140798e-02   p_joint 7.147239e-04

Joint ci ratio: 1.141714e-01	ci left: 6.772761e-04	ci right 7.598693e-04	k: 1177	n:1640000
Cons ci ratio: 2.070371e-02	ci left: 2.116996e-02	ci right 2.161344e-02	k: 35081	n:1640000
KS ci ratio: 5.958995e-02	ci left: 2.553271e-03	ci right 2.710689e-03	k: 4315	n:1640000
RGPD4   1640000 perm   1483 sec   (1106 perm/sec)   p_kst 2.631098e-03   p_cons 2.139085e-02   p_joint 7.176829e-04

Joint ci ratio: 1.137377e-01	ci left: 6.784705e-04	ci right 7.608740e-04	k: 1186	n:1650000
Cons ci ratio: 2.064205e-02	ci left: 2.116827e-02	ci right 2.161038e-02	k: 35291	n:1650000
KS ci ratio: 5.941813e-02	ci left: 2.552723e-03	ci right 2.709637e-03	k: 4340	n:1650000
RGPD4   1650000 perm   1498 sec   (1102 perm/sec)   p_kst 2.630303e-03   p_cons 2.138848e-02   p_joint 7.187879e-04

Joint ci ratio: 1.134513e-01	ci left: 6.778951e-04	ci right 7.600075e-04	k: 1192	n:1660000
Cons ci ratio: 2.057738e-02	ci left: 2.117380e-02	ci right 2.161462e-02	k: 35513	n:1660000
KS ci ratio: 5.932960e-02	ci left: 2.545060e-03	ci right 2.701262e-03	k: 4353	n:1660000
RGPD4   1660000 perm   1513 sec   (1097 perm/sec)   p_kst 2.622289e-03   p_cons 2.139337e-02   p_joint 7.180723e-04

Joint ci ratio: 1.130257e-01	ci left: 6.790725e-04	ci right 7.609983e-04	k: 1201	n:1670000
Cons ci ratio: 2.050335e-02	ci left: 2.119952e-02	ci right 2.163927e-02	k: 35769	n:1670000
KS ci ratio: 5.913971e-02	ci left: 2.546338e-03	ci right 2.702102e-03	k: 4381	n:1670000
RGPD4   1670000 perm   1528 sec   (1093 perm/sec)   p_kst 2.623353e-03   p_cons 2.141856e-02   p_joint 7.191617e-04

Joint ci ratio: 1.128383e-01	ci left: 6.773440e-04	ci right 7.589168e-04	k: 1205	n:1680000
Cons ci ratio: 2.044403e-02	ci left: 2.119651e-02	ci right 2.163491e-02	k: 35977	n:1680000
KS ci ratio: 5.900532e-02	ci left: 2.542910e-03	ci right 2.698098e-03	k: 4401	n:1680000
RGPD4   1680000 perm   1544 sec   (1088 perm/sec)   p_kst 2.619643e-03   p_cons 2.141488e-02   p_joint 7.172619e-04

Joint ci ratio: 1.127917e-01	ci left: 6.739110e-04	ci right 7.550347e-04	k: 1206	n:1690000
Cons ci ratio: 2.037631e-02	ci left: 2.121178e-02	ci right 2.164903e-02	k: 36216	n:1690000
KS ci ratio: 5.885183e-02	ci left: 2.541272e-03	ci right 2.695943e-03	k: 4424	n:1690000
RGPD4   1690000 perm   1560 sec   (1084 perm/sec)   p_kst 2.617751e-03   p_cons 2.142959e-02   p_joint 7.136095e-04

Joint ci ratio: 1.126054e-01	ci left: 6.722334e-04	ci right 7.530126e-04	k: 1210	n:1700000
Cons ci ratio: 2.031097e-02	ci left: 2.122337e-02	ci right 2.165944e-02	k: 36449	n:1700000
KS ci ratio: 5.873927e-02	ci left: 2.536176e-03	ci right 2.690232e-03	k: 4441	n:1700000
RGPD4   1700000 perm   1575 sec   (1079 perm/sec)   p_kst 2.612353e-03   p_cons 2.144059e-02   p_joint 7.117647e-04

Joint ci ratio: 1.128390e-01	ci left: 6.654606e-04	ci right 7.456028e-04	k: 1205	n:1710000
Cons ci ratio: 2.025161e-02	ci left: 2.122377e-02	ci right 2.165856e-02	k: 36663	n:1710000
KS ci ratio: 5.862735e-02	ci left: 2.531140e-03	ci right 2.684587e-03	k: 4458	n:1710000
RGPD4   1710000 perm   1591 sec   (1075 perm/sec)   p_kst 2.607018e-03   p_cons 2.144035e-02   p_joint 7.046784e-04

Joint ci ratio: 1.123739e-01	ci left: 6.672419e-04	ci right 7.472455e-04	k: 1215	n:1720000
Cons ci ratio: 2.018857e-02	ci left: 2.123284e-02	ci right 2.166645e-02	k: 36892	n:1720000
KS ci ratio: 5.841148e-02	ci left: 2.535330e-03	ci right 2.688446e-03	k: 4491	n:1720000
RGPD4   1720000 perm   1606 sec   (1071 perm/sec)   p_kst 2.611047e-03   p_cons 2.144884e-02   p_joint 7.063953e-04

Joint ci ratio: 1.120978e-01	ci left: 6.667558e-04	ci right 7.464917e-04	k: 1221	n:1730000
Cons ci ratio: 2.013471e-02	ci left: 2.122398e-02	ci right 2.165623e-02	k: 37090	n:1730000
KS ci ratio: 5.819154e-02	ci left: 2.540041e-03	ci right 2.692845e-03	k: 4525	n:1730000
RGPD4   1730000 perm   1622 sec   (1067 perm/sec)   p_kst 2.615607e-03   p_cons 2.143931e-02   p_joint 7.057803e-04

Joint ci ratio: 1.118236e-01	ci left: 6.662756e-04	ci right 7.457463e-04	k: 1227	n:1740000
Cons ci ratio: 2.007551e-02	ci left: 2.122724e-02	ci right 2.165827e-02	k: 37309	n:1740000
KS ci ratio: 5.804429e-02	ci left: 2.538470e-03	ci right 2.690779e-03	k: 4548	n:1740000
RGPD4   1740000 perm   1638 sec   (1062 perm/sec)   p_kst 2.613793e-03   p_cons 2.144195e-02   p_joint 7.051724e-04

Joint ci ratio: 1.117783e-01	ci left: 6.630237e-04	ci right 7.420724e-04	k: 1228	n:1750000
Cons ci ratio: 2.001082e-02	ci left: 2.124296e-02	ci right 2.167291e-02	k: 37550	n:1750000
KS ci ratio: 5.788547e-02	ci left: 2.538043e-03	ci right 2.689896e-03	k: 4573	n:1750000
RGPD4   1750000 perm   1654 sec   (1058 perm/sec)   p_kst 2.613143e-03   p_cons 2.145714e-02   p_joint 7.017143e-04

Joint ci ratio: 1.114162e-01	ci left: 6.636751e-04	ci right 7.425283e-04	k: 1236	n:1760000
Cons ci ratio: 1.995810e-02	ci left: 2.123477e-02	ci right 2.166340e-02	k: 37749	n:1760000
KS ci ratio: 5.774053e-02	ci left: 2.536501e-03	ci right 2.687870e-03	k: 4596	n:1760000
RGPD4   1760000 perm   1670 sec   (1054 perm/sec)   p_kst 2.611364e-03   p_cons 2.144830e-02   p_joint 7.022727e-04

Joint ci ratio: 1.112815e-01	ci left: 6.615732e-04	ci right 7.400754e-04	k: 1239	n:1770000
Cons ci ratio: 1.990365e-02	ci left: 2.123116e-02	ci right 2.165854e-02	k: 37956	n:1770000
KS ci ratio: 5.763421e-02	ci left: 2.531637e-03	ci right 2.682428e-03	k: 4613	n:1770000
RGPD4   1770000 perm   1686 sec   (1050 perm/sec)   p_kst 2.606215e-03   p_cons 2.144407e-02   p_joint 7.000000e-04

Joint ci ratio: 1.111025e-01	ci left: 6.600411e-04	ci right 7.382273e-04	k: 1243	n:1780000
Cons ci ratio: 1.984672e-02	ci left: 2.123375e-02	ci right 2.165994e-02	k: 38174	n:1780000
KS ci ratio: 5.742909e-02	ci left: 2.535687e-03	ci right 2.686164e-03	k: 4646	n:1780000
RGPD4   1780000 perm   1702 sec   (1046 perm/sec)   p_kst 2.610112e-03   p_cons 2.144607e-02   p_joint 6.983146e-04

Joint ci ratio: 1.109244e-01	ci left: 6.585263e-04	ci right 7.363999e-04	k: 1247	n:1790000
Cons ci ratio: 1.979396e-02	ci left: 2.122853e-02	ci right 2.165347e-02	k: 38378	n:1790000
KS ci ratio: 5.732448e-02	ci left: 2.530882e-03	ci right 2.680791e-03	k: 4663	n:1790000
RGPD4   1790000 perm   1719 sec   (1042 perm/sec)   p_kst 2.605028e-03   p_cons 2.144022e-02   p_joint 6.966480e-04

Joint ci ratio: 1.107030e-01	ci left: 6.575686e-04	ci right 7.351635e-04	k: 1252	n:1800000
Cons ci ratio: 1.973979e-02	ci left: 2.122723e-02	ci right 2.165098e-02	k: 38589	n:1800000
KS ci ratio: 5.715926e-02	ci left: 2.531607e-03	ci right 2.681112e-03	k: 4690	n:1800000
RGPD4   1800000 perm   1735 sec   (1037 perm/sec)   p_kst 2.605556e-03   p_cons 2.143833e-02   p_joint 6.955556e-04

Joint ci ratio: 1.103950e-01	ci left: 6.576961e-04	ci right 7.350761e-04	k: 1259	n:1810000
Cons ci ratio: 1.968347e-02	ci left: 2.123145e-02	ci right 2.165406e-02	k: 38810	n:1810000
KS ci ratio: 5.698940e-02	ci left: 2.532869e-03	ci right 2.681990e-03	k: 4718	n:1810000
RGPD4   1810000 perm   1751 sec   (1034 perm/sec)   p_kst 2.606630e-03   p_cons 2.144199e-02   p_joint 6.955801e-04

Joint ci ratio: 1.101767e-01	ci left: 6.567539e-04	ci right 7.338603e-04	k: 1264	n:1820000
Cons ci ratio: 1.962352e-02	ci left: 2.124438e-02	ci right 2.166594e-02	k: 39047	n:1820000
KS ci ratio: 5.680905e-02	ci left: 2.535201e-03	ci right 2.683971e-03	k: 4748	n:1820000
RGPD4   1820000 perm   1768 sec   (1030 perm/sec)   p_kst 2.608791e-03   p_cons 2.145440e-02   p_joint 6.945055e-04

Joint ci ratio: 1.098299e-01	ci left: 6.574164e-04	ci right 7.343419e-04	k: 1272	n:1830000
Cons ci ratio: 1.956514e-02	ci left: 2.125499e-02	ci right 2.167549e-02	k: 39280	n:1830000
KS ci ratio: 5.663634e-02	ci left: 2.536970e-03	ci right 2.685376e-03	k: 4777	n:1830000
RGPD4   1830000 perm   1784 sec   (1026 perm/sec)   p_kst 2.610383e-03   p_cons 2.146448e-02   p_joint 6.950820e-04

Joint ci ratio: 1.096579e-01	ci left: 6.559577e-04	ci right 7.325845e-04	k: 1276	n:1840000
Cons ci ratio: 1.950903e-02	ci left: 2.126170e-02	ci right 2.168111e-02	k: 39506	n:1840000
KS ci ratio: 5.645342e-02	ci left: 2.539792e-03	ci right 2.687868e-03	k: 4808	n:1840000
RGPD4   1840000 perm   1801 sec   (1022 perm/sec)   p_kst 2.613043e-03   p_cons 2.147065e-02   p_joint 6.934783e-04

Joint ci ratio: 1.094439e-01	ci left: 6.550406e-04	ci right 7.314013e-04	k: 1281	n:1850000
Cons ci ratio: 1.945816e-02	ci left: 2.125812e-02	ci right 2.167636e-02	k: 39713	n:1850000
KS ci ratio: 5.628393e-02	ci left: 2.541518e-03	ci right 2.689235e-03	k: 4837	n:1850000
RGPD4   1850000 perm   1817 sec   (1018 perm/sec)   p_kst 2.614595e-03   p_cons 2.146649e-02   p_joint 6.924324e-04

Joint ci ratio: 1.092311e-01	ci left: 6.541335e-04	ci right 7.302308e-04	k: 1286	n:1860000
Cons ci ratio: 1.940794e-02	ci left: 2.125404e-02	ci right 2.167111e-02	k: 39919	n:1860000
KS ci ratio: 5.613909e-02	ci left: 2.541106e-03	ci right 2.688407e-03	k: 4862	n:1860000
RGPD4   1860000 perm   1834 sec   (1014 perm/sec)   p_kst 2.613978e-03   p_cons 2.146183e-02   p_joint 6.913978e-04

Joint ci ratio: 1.088511e-01	ci left: 6.553170e-04	ci right 7.312698e-04	k: 1295	n:1870000
Cons ci ratio: 1.935860e-02	ci left: 2.124894e-02	ci right 2.166484e-02	k: 40123	n:1870000
KS ci ratio: 5.597240e-02	ci left: 2.542808e-03	ci right 2.689756e-03	k: 4891	n:1870000
RGPD4   1870000 perm   1851 sec   (1010 perm/sec)   p_kst 2.615508e-03   p_cons 2.145615e-02   p_joint 6.925134e-04

Joint ci ratio: 1.121009e-01	ci left: 6.135563e-04	ci right 6.869323e-04	k: 1221	n:1880000
Cons ci ratio: 1.930596e-02	ci left: 2.125184e-02	ci right 2.166665e-02	k: 40342	n:1880000
KS ci ratio: 5.581287e-02	ci left: 2.543967e-03	ci right 2.690550e-03	k: 4919	n:1880000
RGPD4   1880000 perm   1868 sec   (1006 perm/sec)   p_kst 2.616489e-03   p_cons 2.145851e-02   p_joint 6.494681e-04

Joint ci ratio: 1.118723e-01	ci left: 6.128813e-04	ci right 6.860173e-04	k: 1226	n:1890000
Cons ci ratio: 1.925569e-02	ci left: 2.125050e-02	ci right 2.166419e-02	k: 40553	n:1890000
KS ci ratio: 5.568857e-02	ci left: 2.541985e-03	ci right 2.688117e-03	k: 4941	n:1890000
RGPD4   1890000 perm   1885 sec   (1003 perm/sec)   p_kst 2.614286e-03   p_cons 2.145661e-02   p_joint 6.486772e-04

Joint ci ratio: 1.115546e-01	ci left: 6.132369e-04	ci right 6.861938e-04	k: 1233	n:1900000
Cons ci ratio: 1.921183e-02	ci left: 2.123608e-02	ci right 2.164854e-02	k: 40739	n:1900000
KS ci ratio: 5.550346e-02	ci left: 2.545733e-03	ci right 2.691579e-03	k: 4974	n:1900000
RGPD4   1900000 perm   1902 sec   (999 perm/sec)   p_kst 2.617895e-03   p_cons 2.144158e-02   p_joint 6.489474e-04

Joint ci ratio: 1.112395e-01	ci left: 6.135891e-04	ci right 6.863681e-04	k: 1240	n:1910000
Cons ci ratio: 1.916061e-02	ci left: 2.123849e-02	ci right 2.164988e-02	k: 40957	n:1910000
KS ci ratio: 5.535345e-02	ci left: 2.546345e-03	ci right 2.691819e-03	k: 5001	n:1910000
RGPD4   1910000 perm   1919 sec   (995 perm/sec)   p_kst 2.618325e-03   p_cons 2.144346e-02   p_joint 6.492147e-04

Joint ci ratio: 1.109715e-01	ci left: 6.134314e-04	ci right 6.860051e-04	k: 1246	n:1920000
Cons ci ratio: 1.911598e-02	ci left: 2.122739e-02	ci right 2.163760e-02	k: 41149	n:1920000
KS ci ratio: 5.524321e-02	ci left: 2.543356e-03	ci right 2.688359e-03	k: 5021	n:1920000
RGPD4   1920000 perm   1936 sec   (992 perm/sec)   p_kst 2.615104e-03   p_cons 2.143177e-02   p_joint 6.489583e-04

Joint ci ratio: 1.108384e-01	ci left: 6.117643e-04	ci right 6.840482e-04	k: 1249	n:1930000
Cons ci ratio: 1.906293e-02	ci left: 2.123549e-02	ci right 2.164470e-02	k: 41378	n:1930000
KS ci ratio: 5.514459e-02	ci left: 2.539375e-03	ci right 2.683885e-03	k: 5039	n:1930000
RGPD4   1930000 perm   1954 sec   (988 perm/sec)   p_kst 2.610881e-03   p_cons 2.143938e-02   p_joint 6.471503e-04

Joint ci ratio: 1.104854e-01	ci left: 6.126205e-04	ci right 6.847600e-04	k: 1257	n:1940000
Cons ci ratio: 1.900916e-02	ci left: 2.124607e-02	ci right 2.165433e-02	k: 41612	n:1940000
KS ci ratio: 5.500290e-02	ci left: 2.539503e-03	ci right 2.683638e-03	k: 5065	n:1940000
RGPD4   1940000 perm   1971 sec   (984 perm/sec)   p_kst 2.610825e-03   p_cons 2.144948e-02   p_joint 6.479381e-04

Joint ci ratio: 1.105735e-01	ci left: 6.084815e-04	ci right 6.801945e-04	k: 1255	n:1950000
Cons ci ratio: 1.896140e-02	ci left: 2.124430e-02	ci right 2.165148e-02	k: 41822	n:1950000
KS ci ratio: 5.485690e-02	ci left: 2.540136e-03	ci right 2.683912e-03	k: 5092	n:1950000
RGPD4   1950000 perm   1989 sec   (981 perm/sec)   p_kst 2.611282e-03   p_cons 2.144718e-02   p_joint 6.435897e-04

Joint ci ratio: 1.104418e-01	ci left: 6.068652e-04	ci right 6.782970e-04	k: 1258	n:1960000
Cons ci ratio: 1.891055e-02	ci left: 2.125016e-02	ci right 2.165635e-02	k: 42047	n:1960000
KS ci ratio: 5.473349e-02	ci left: 2.538750e-03	ci right 2.682114e-03	k: 5115	n:1960000
RGPD4   1960000 perm   2006 sec   (977 perm/sec)   p_kst 2.609694e-03   p_cons 2.145255e-02   p_joint 6.418367e-04

Joint ci ratio: 1.100926e-01	ci left: 6.077336e-04	ci right 6.790268e-04	k: 1266	n:1970000
Cons ci ratio: 1.885874e-02	ci left: 2.125900e-02	ci right 2.166423e-02	k: 42278	n:1970000
KS ci ratio: 5.461091e-02	ci left: 2.537378e-03	ci right 2.680334e-03	k: 5138	n:1970000
RGPD4   1970000 perm   2024 sec   (973 perm/sec)   p_kst 2.608122e-03   p_cons 2.146091e-02   p_joint 6.426396e-04

Joint ci ratio: 1.100493e-01	ci left: 6.051554e-04	ci right 6.761163e-04	k: 1267	n:1980000
Cons ci ratio: 1.881708e-02	ci left: 2.124613e-02	ci right 2.165022e-02	k: 42466	n:1980000
KS ci ratio: 5.449445e-02	ci left: 2.535523e-03	ci right 2.678059e-03	k: 5160	n:1980000
RGPD4   1980000 perm   2042 sec   (970 perm/sec)   p_kst 2.606061e-03   p_cons 2.144747e-02   p_joint 6.398990e-04

Joint ci ratio: 1.098330e-01	ci left: 6.045579e-04	ci right 6.753004e-04	k: 1272	n:1990000
Cons ci ratio: 1.876648e-02	ci left: 2.125391e-02	ci right 2.165704e-02	k: 42695	n:1990000
KS ci ratio: 5.439978e-02	ci left: 2.531704e-03	ci right 2.673770e-03	k: 5178	n:1990000
RGPD4   1990000 perm   2060 sec   (966 perm/sec)   p_kst 2.602010e-03   p_cons 2.145477e-02   p_joint 6.391960e-04

Joint ci ratio: 1.097469e-01	ci left: 6.025076e-04	ci right 6.729514e-04	k: 1274	n:2000000
Cons ci ratio: 1.871472e-02	ci left: 2.126508e-02	ci right 2.166730e-02	k: 42931	n:2000000
KS ci ratio: 5.429513e-02	ci left: 2.528909e-03	ci right 2.670537e-03	k: 5198	n:2000000
RGPD4   2000000 perm   2077 sec   (963 perm/sec)   p_kst 2.599000e-03   p_cons 2.146550e-02   p_joint 6.370000e-04

Joint ci ratio: 1.094469e-01	ci left: 6.028972e-04	ci right 6.731814e-04	k: 1281	n:2010000
Cons ci ratio: 1.866892e-02	ci left: 2.126377e-02	ci right 2.166497e-02	k: 43142	n:2010000
KS ci ratio: 5.414948e-02	ci left: 2.530069e-03	ci right 2.671370e-03	k: 5226	n:2010000
RGPD4   2010000 perm   2095 sec   (959 perm/sec)   p_kst 2.600000e-03   p_cons 2.146368e-02   p_joint 6.373134e-04

Joint ci ratio: 1.098767e-01	ci left: 5.950977e-04	ci right 6.647627e-04	k: 1271	n:2020000
Cons ci ratio: 1.862411e-02	ci left: 2.126100e-02	ci right 2.166117e-02	k: 43350	n:2020000
KS ci ratio: 5.402562e-02	ci left: 2.529264e-03	ci right 2.670188e-03	k: 5250	n:2020000
RGPD4   2020000 perm   2113 sec   (956 perm/sec)   p_kst 2.599010e-03   p_cons 2.146040e-02   p_joint 6.292079e-04

Joint ci ratio: 1.094900e-01	ci left: 5.964780e-04	ci right 6.660431e-04	k: 1280	n:2030000
Cons ci ratio: 1.857722e-02	ci left: 2.126364e-02	ci right 2.166285e-02	k: 43569	n:2030000
KS ci ratio: 5.391285e-02	ci left: 2.527496e-03	ci right 2.668018e-03	k: 5272	n:2030000
RGPD4   2030000 perm   2131 sec   (952 perm/sec)   p_kst 2.597044e-03   p_cons 2.146256e-02   p_joint 6.305419e-04

Joint ci ratio: 1.091496e-01	ci left: 5.973685e-04	ci right 6.668069e-04	k: 1288	n:2040000
Cons ci ratio: 1.853870e-02	ci left: 2.124821e-02	ci right 2.164629e-02	k: 43751	n:2040000
KS ci ratio: 5.377025e-02	ci left: 2.528647e-03	ci right 2.668849e-03	k: 5300	n:2040000
RGPD4   2040000 perm   2149 sec   (949 perm/sec)   p_kst 2.598039e-03   p_cons 2.144657e-02   p_joint 6.313725e-04

Joint ci ratio: 1.093197e-01	ci left: 5.925565e-04	ci right 6.615498e-04	k: 1284	n:2050000
Cons ci ratio: 1.849073e-02	ci left: 2.125478e-02	ci right 2.165194e-02	k: 43978	n:2050000
KS ci ratio: 5.364897e-02	ci left: 2.527862e-03	ci right 2.667695e-03	k: 5324	n:2050000
RGPD4   2050000 perm   2167 sec   (946 perm/sec)   p_kst 2.597073e-03   p_cons 2.145268e-02   p_joint 6.263415e-04

Joint ci ratio: 1.090653e-01	ci left: 5.925131e-04	ci right 6.613305e-04	k: 1290	n:2060000
Cons ci ratio: 1.844655e-02	ci left: 2.125355e-02	ci right 2.164973e-02	k: 44189	n:2060000
KS ci ratio: 5.354356e-02	ci left: 2.525649e-03	ci right 2.665076e-03	k: 5345	n:2060000
RGPD4   2060000 perm   2186 sec   (942 perm/sec)   p_kst 2.594660e-03   p_cons 2.145097e-02   p_joint 6.262136e-04

Joint ci ratio: 1.085618e-01	ci left: 5.952901e-04	ci right 6.640904e-04	k: 1302	n:2070000
Cons ci ratio: 1.840057e-02	ci left: 2.125715e-02	ci right 2.165240e-02	k: 44410	n:2070000
KS ci ratio: 5.337897e-02	ci left: 2.529176e-03	ci right 2.668356e-03	k: 5378	n:2070000
RGPD4   2070000 perm   2204 sec   (939 perm/sec)   p_kst 2.598068e-03   p_cons 2.145411e-02   p_joint 6.289855e-04

Joint ci ratio: 1.088129e-01	ci left: 5.896218e-04	ci right 6.579348e-04	k: 1296	n:2080000
Cons ci ratio: 1.835513e-02	ci left: 2.126024e-02	ci right 2.165456e-02	k: 44630	n:2080000
KS ci ratio: 5.326031e-02	ci left: 2.528402e-03	ci right 2.667220e-03	k: 5402	n:2080000
RGPD4   2080000 perm   2222 sec   (936 perm/sec)   p_kst 2.597115e-03   p_cons 2.145673e-02   p_joint 6.230769e-04

Joint ci ratio: 1.083958e-01	ci left: 5.914554e-04	ci right 6.597014e-04	k: 1306	n:2090000
Cons ci ratio: 1.831025e-02	ci left: 2.126282e-02	ci right 2.165621e-02	k: 44849	n:2090000
KS ci ratio: 5.313753e-02	ci left: 2.528107e-03	ci right 2.666579e-03	k: 5427	n:2090000
RGPD4   2090000 perm   2241 sec   (933 perm/sec)   p_kst 2.596651e-03   p_cons 2.145885e-02   p_joint 6.248804e-04

Joint ci ratio: 1.081066e-01	ci left: 5.918821e-04	ci right 6.599835e-04	k: 1313	n:2100000
Cons ci ratio: 1.826362e-02	ci left: 2.127012e-02	ci right 2.166263e-02	k: 45078	n:2100000
KS ci ratio: 5.303510e-02	ci left: 2.525935e-03	ci right 2.664014e-03	k: 5448	n:2100000
RGPD4   2100000 perm   2259 sec   (930 perm/sec)   p_kst 2.594286e-03   p_cons 2.146571e-02   p_joint 6.252381e-04

Joint ci ratio: 1.079425e-01	ci left: 5.909214e-04	ci right 6.588025e-04	k: 1317	n:2110000
Cons ci ratio: 1.821487e-02	ci left: 2.128301e-02	ci right 2.167470e-02	k: 45319	n:2110000
KS ci ratio: 5.291387e-02	ci left: 2.525655e-03	ci right 2.663393e-03	k: 5473	n:2110000
RGPD4   2110000 perm   2278 sec   (926 perm/sec)   p_kst 2.593839e-03   p_cons 2.147820e-02   p_joint 6.241706e-04

Joint ci ratio: 1.081894e-01	ci left: 5.853803e-04	ci right 6.527884e-04	k: 1311	n:2120000
Cons ci ratio: 1.817121e-02	ci left: 2.128498e-02	ci right 2.167576e-02	k: 45537	n:2120000
KS ci ratio: 5.275980e-02	ci left: 2.528637e-03	ci right 2.666124e-03	k: 5505	n:2120000
RGPD4   2120000 perm   2296 sec   (923 perm/sec)   p_kst 2.596698e-03   p_cons 2.147972e-02   p_joint 6.183962e-04

Joint ci ratio: 1.079428e-01	ci left: 5.853728e-04	ci right 6.526167e-04	k: 1317	n:2130000
Cons ci ratio: 1.812603e-02	ci left: 2.129114e-02	ci right 2.168105e-02	k: 45764	n:2130000
KS ci ratio: 5.268343e-02	ci left: 2.524178e-03	ci right 2.661218e-03	k: 5521	n:2130000
RGPD4   2130000 perm   2315 sec   (920 perm/sec)   p_kst 2.592019e-03   p_cons 2.148545e-02   p_joint 6.183099e-04

Joint ci ratio: 1.080661e-01	ci left: 5.812733e-04	ci right 6.481274e-04	k: 1314	n:2140000
Cons ci ratio: 1.808501e-02	ci left: 2.128841e-02	ci right 2.167738e-02	k: 45972	n:2140000
KS ci ratio: 5.256459e-02	ci left: 2.523911e-03	ci right 2.660618e-03	k: 5546	n:2140000
RGPD4   2140000 perm   2334 sec   (917 perm/sec)   p_kst 2.591589e-03   p_cons 2.148224e-02   p_joint 6.140187e-04

Joint ci ratio: 1.079432e-01	ci left: 5.799274e-04	ci right 6.465459e-04	k: 1317	n:2150000
Cons ci ratio: 1.803988e-02	ci left: 2.129588e-02	ci right 2.168401e-02	k: 46202	n:2150000
KS ci ratio: 5.248907e-02	ci left: 2.519516e-03	ci right 2.655783e-03	k: 5562	n:2150000
RGPD4   2150000 perm   2353 sec   (914 perm/sec)   p_kst 2.586977e-03   p_cons 2.148930e-02   p_joint 6.125581e-04

Joint ci ratio: 1.087303e-01	ci left: 5.686844e-04	ci right 6.345183e-04	k: 1298	n:2160000
Cons ci ratio: 1.799805e-02	ci left: 2.129638e-02	ci right 2.168361e-02	k: 46417	n:2160000
KS ci ratio: 5.242800e-02	ci left: 2.513791e-03	ci right 2.649585e-03	k: 5575	n:2160000
RGPD4   2160000 perm   2372 sec   (911 perm/sec)   p_kst 2.581019e-03   p_cons 2.148935e-02   p_joint 6.009259e-04

Joint ci ratio: 1.104892e-01	ci left: 5.476873e-04	ci right 6.121829e-04	k: 1257	n:2170000
Cons ci ratio: 1.795513e-02	ci left: 2.130008e-02	ci right 2.168645e-02	k: 46639	n:2170000
KS ci ratio: 5.232493e-02	ci left: 2.512212e-03	ci right 2.647646e-03	k: 5597	n:2170000
RGPD4   2170000 perm   2391 sec   (908 perm/sec)   p_kst 2.579263e-03   p_cons 2.149263e-02   p_joint 5.792627e-04

Joint ci ratio: 1.104015e-01	ci left: 5.460671e-04	ci right 6.103175e-04	k: 1259	n:2180000
Cons ci ratio: 1.791174e-02	ci left: 2.130558e-02	ci right 2.169110e-02	k: 46865	n:2180000
KS ci ratio: 5.223644e-02	ci left: 2.509290e-03	ci right 2.644331e-03	k: 5616	n:2180000
RGPD4   2180000 perm   2410 sec   (905 perm/sec)   p_kst 2.576147e-03   p_cons 2.149771e-02   p_joint 5.775229e-04

Joint ci ratio: 1.102268e-01	ci left: 5.453497e-04	ci right 6.094076e-04	k: 1263	n:2190000
Cons ci ratio: 1.786944e-02	ci left: 2.130921e-02	ci right 2.169388e-02	k: 47087	n:2190000
KS ci ratio: 5.214839e-02	ci left: 2.506394e-03	ci right 2.641045e-03	k: 5635	n:2190000
RGPD4   2190000 perm   2428 sec   (902 perm/sec)   p_kst 2.573059e-03   p_cons 2.150091e-02   p_joint 5.767123e-04

Joint ci ratio: 1.098795e-01	ci left: 5.464071e-04	ci right 6.103739e-04	k: 1271	n:2200000
Cons ci ratio: 1.782782e-02	ci left: 2.131191e-02	ci right 2.169572e-02	k: 47307	n:2200000
KS ci ratio: 5.198711e-02	ci left: 2.510704e-03	ci right 2.645156e-03	k: 5670	n:2200000
RGPD4   2200000 perm   2447 sec   (899 perm/sec)   p_kst 2.577273e-03   p_cons 2.150318e-02   p_joint 5.777273e-04

Joint ci ratio: 1.096642e-01	ci left: 5.461350e-04	ci right 6.099366e-04	k: 1276	n:2210000
Cons ci ratio: 1.778802e-02	ci left: 2.131097e-02	ci right 2.169390e-02	k: 47519	n:2210000
KS ci ratio: 5.187747e-02	ci left: 2.510062e-03	ci right 2.644188e-03	k: 5694	n:2210000
RGPD4   2210000 perm   2467 sec   (896 perm/sec)   p_kst 2.576471e-03   p_cons 2.150181e-02   p_joint 5.773756e-04

Joint ci ratio: 1.095357e-01	ci left: 5.449892e-04	ci right 6.085776e-04	k: 1279	n:2220000
Cons ci ratio: 1.774507e-02	ci left: 2.131812e-02	ci right 2.170024e-02	k: 47749	n:2220000
KS ci ratio: 5.176399e-02	ci left: 2.509871e-03	ci right 2.643685e-03	k: 5719	n:2220000
RGPD4   2220000 perm   2486 sec   (893 perm/sec)   p_kst 2.576126e-03   p_cons 2.150856e-02   p_joint 5.761261e-04

Joint ci ratio: 1.095787e-01	ci left: 5.421091e-04	ci right 6.053878e-04	k: 1278	n:2230000
Cons ci ratio: 1.771148e-02	ci left: 2.130378e-02	ci right 2.168491e-02	k: 47931	n:2230000
KS ci ratio: 5.166026e-02	ci left: 2.508796e-03	ci right 2.642277e-03	k: 5742	n:2230000
RGPD4   2230000 perm   2505 sec   (890 perm/sec)   p_kst 2.574888e-03   p_cons 2.149372e-02   p_joint 5.730942e-04

Joint ci ratio: 1.093226e-01	ci left: 5.422943e-04	ci right 6.054371e-04	k: 1284	n:2240000
Cons ci ratio: 1.767452e-02	ci left: 2.129801e-02	ci right 2.167823e-02	k: 48132	n:2240000
KS ci ratio: 5.152581e-02	ci left: 2.510816e-03	ci right 2.644046e-03	k: 5772	n:2240000
RGPD4   2240000 perm   2525 sec   (887 perm/sec)   p_kst 2.576786e-03   p_cons 2.148750e-02   p_joint 5.732143e-04

Joint ci ratio: 1.091528e-01	ci left: 5.416133e-04	ci right 6.045726e-04	k: 1288	n:2250000
Cons ci ratio: 1.763275e-02	ci left: 2.130424e-02	ci right 2.168366e-02	k: 48360	n:2250000
KS ci ratio: 5.141906e-02	ci left: 2.510186e-03	ci right 2.643099e-03	k: 5796	n:2250000
RGPD4   2250000 perm   2545 sec   (884 perm/sec)   p_kst 2.576000e-03   p_cons 2.149333e-02   p_joint 5.724444e-04

Joint ci ratio: 1.089839e-01	ci left: 5.409384e-04	ci right 6.037157e-04	k: 1292	n:2260000
Cons ci ratio: 1.759258e-02	ci left: 2.130733e-02	ci right 2.168594e-02	k: 48581	n:2260000
KS ci ratio: 5.129972e-02	ci left: 2.510873e-03	ci right 2.643504e-03	k: 5823	n:2260000
RGPD4   2260000 perm   2564 sec   (881 perm/sec)   p_kst 2.576549e-03   p_cons 2.149602e-02   p_joint 5.716814e-04

Joint ci ratio: 1.086483e-01	ci left: 5.419837e-04	ci right 6.046762e-04	k: 1300	n:2270000
Cons ci ratio: 1.755580e-02	ci left: 2.130293e-02	ci right 2.168067e-02	k: 48785	n:2270000
KS ci ratio: 5.117244e-02	ci left: 2.512424e-03	ci right 2.644798e-03	k: 5852	n:2270000
RGPD4   2270000 perm   2584 sec   (878 perm/sec)   p_kst 2.577974e-03   p_cons 2.149119e-02   p_joint 5.726872e-04

Joint ci ratio: 1.081917e-01	ci left: 5.443003e-04	ci right 6.069794e-04	k: 1311	n:2280000
Cons ci ratio: 1.751177e-02	ci left: 2.131649e-02	ci right 2.169350e-02	k: 49030	n:2280000
KS ci ratio: 5.105915e-02	ci left: 2.512662e-03	ci right 2.644747e-03	k: 5878	n:2280000
RGPD4   2280000 perm   2604 sec   (875 perm/sec)   p_kst 2.578070e-03   p_cons 2.150439e-02   p_joint 5.750000e-04

Joint ci ratio: 1.006119e-01	ci left: 6.291101e-04	ci right 6.961805e-04	k: 1516	n:2290000
Cons ci ratio: 1.747114e-02	ci left: 2.132253e-02	ci right 2.169877e-02	k: 49258	n:2290000
KS ci ratio: 5.097259e-02	ci left: 2.510312e-03	ci right 2.642043e-03	k: 5898	n:2290000
RGPD4   2290000 perm   2624 sec   (873 perm/sec)   p_kst 2.575546e-03   p_cons 2.151004e-02   p_joint 6.620087e-04

Joint ci ratio: 1.004796e-01	ci left: 6.280702e-04	ci right 6.949365e-04	k: 1520	n:2300000
Cons ci ratio: 1.742918e-02	ci left: 2.133242e-02	ci right 2.170792e-02	k: 49495	n:2300000
KS ci ratio: 5.086493e-02	ci left: 2.510128e-03	ci right 2.641564e-03	k: 5923	n:2300000
RGPD4   2300000 perm   2644 sec   (870 perm/sec)   p_kst 2.575217e-03   p_cons 2.151957e-02   p_joint 6.608696e-04

Joint ci ratio: 1.001835e-01	ci left: 6.291496e-04	ci right 6.959220e-04	k: 1529	n:2310000
Cons ci ratio: 1.739163e-02	ci left: 2.133231e-02	ci right 2.170699e-02	k: 49709	n:2310000
KS ci ratio: 5.070670e-02	ci left: 2.515076e-03	ci right 2.646349e-03	k: 5960	n:2310000
RGPD4   2310000 perm   2664 sec   (867 perm/sec)   p_kst 2.580087e-03   p_cons 2.151905e-02   p_joint 6.619048e-04

Joint ci ratio: 1.000855e-01	ci left: 6.276985e-04	ci right 6.942478e-04	k: 1532	n:2320000
Cons ci ratio: 1.734757e-02	ci left: 2.134851e-02	ci right 2.172252e-02	k: 49961	n:2320000
KS ci ratio: 5.057107e-02	ci left: 2.517854e-03	ci right 2.648910e-03	k: 5992	n:2320000
RGPD4   2320000 perm   2685 sec   (864 perm/sec)   p_kst 2.582759e-03   p_cons 2.153491e-02   p_joint 6.603448e-04

Joint ci ratio: 9.995528e-02	ci left: 6.266783e-04	ci right 6.930279e-04	k: 1536	n:2330000
Cons ci ratio: 1.731001e-02	ci left: 2.134961e-02	ci right 2.172282e-02	k: 50178	n:2330000
KS ci ratio: 5.045753e-02	ci left: 2.518489e-03	ci right 2.649275e-03	k: 6019	n:2330000
RGPD4   2330000 perm   2705 sec   (861 perm/sec)   p_kst 2.583262e-03   p_cons 2.153562e-02   p_joint 6.592275e-04

Outputting figure to mutsig2_images.part000000000146/RGPD4.22_5369_2330000_0.0025833_0.021536_0.00065923.png
                gene_name: RGPD4
               theta_stop: 0.100 
                    nperm: 2330000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0026 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.00066 
     ci_joint_bounds_left: 0.00063 
    ci_joint_bounds_right: 0.00069 

Current progress: 2 percent done.
RGS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
RGS22   10000 perm   2 sec   (4496 perm/sec)   p_kst 3.585000e-01   p_cons 5.910000e-02   p_joint 1.664000e-01

Joint ci ratio: 5.864514e-02	ci left: 1.772177e-01	ci right 1.879747e-01	k: 3651	n:20000
Cons ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
KS ci ratio: 3.616173e-02	ci left: 3.633529e-01	ci right 3.767849e-01	k: 7401	n:20000
RGS22   20000 perm   5 sec   (4078 perm/sec)   p_kst 3.700500e-01   p_cons 5.230000e-02   p_joint 1.825500e-01

Joint ci ratio: 4.515104e-02	ci left: 1.962463e-01	ci right 2.053450e-01	k: 6023	n:30000
Cons ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
KS ci ratio: 2.948793e-02	ci left: 3.651974e-01	ci right 3.761610e-01	k: 11120	n:30000
RGS22   30000 perm   8 sec   (3939 perm/sec)   p_kst 3.706667e-01   p_cons 5.343333e-02   p_joint 2.007667e-01

Outputting figure to mutsig2_images.part000000000146/RGS22.17_3903_30000_0.37067_0.053433_0.20077.png
                gene_name: RGS22
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 3 percent done.
RGS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
Cons ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
KS ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
RGS7   10000 perm   2 sec   (4854 perm/sec)   p_kst 4.943000e-01   p_cons 3.642000e-01   p_joint 5.158000e-01

Outputting figure to mutsig2_images.part000000000146/RGS7.13_1532_10000_0.4943_0.3642_0.5158.png
                gene_name: RGS7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 5 percent done.
RGPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
RGPD3   10000 perm   3 sec   (3945 perm/sec)   p_kst 2.860000e-01   p_cons 1.092000e-01   p_joint 2.155000e-01

Joint ci ratio: 6.457041e-02	ci left: 1.505524e-01	ci right 1.606479e-01	k: 3111	n:20000
Cons ci ratio: 7.884271e-02	ci left: 1.056464e-01	ci right 1.143673e-01	k: 2199	n:20000
KS ci ratio: 4.496660e-02	ci left: 2.691177e-01	ci right 2.815477e-01	k: 5506	n:20000
RGPD3   20000 perm   5 sec   (3723 perm/sec)   p_kst 2.753000e-01   p_cons 1.099500e-01   p_joint 1.555500e-01

Outputting figure to mutsig2_images.part000000000146/RGPD3.10_5369_20000_0.2753_0.10995_0.15555.png
                gene_name: RGPD3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 7 percent done.
RFTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
Cons ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
KS ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
RFTN2   10000 perm   2 sec   (5495 perm/sec)   p_kst 8.754000e-01   p_cons 5.442000e-01   p_joint 8.918000e-01

Outputting figure to mutsig2_images.part000000000146/RFTN2.9_1542_10000_0.8754_0.5442_0.8918.png
                gene_name: RFTN2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 9 percent done.
RGAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
Cons ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
RGAG1   10000 perm   2 sec   (4542 perm/sec)   p_kst 8.977000e-01   p_cons 3.737000e-01   p_joint 6.938000e-01

Outputting figure to mutsig2_images.part000000000146/RGAG1.9_4175_10000_0.8977_0.3737_0.6938.png
                gene_name: RGAG1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 10 percent done.
RGS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
Cons ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
KS ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
RGS3   10000 perm   2 sec   (4608 perm/sec)   p_kst 3.292000e-01   p_cons 1.301000e-01   p_joint 1.884000e-01

Joint ci ratio: 5.707340e-02	ci left: 1.853746e-01	ci right 1.963154e-01	k: 3816	n:20000
Cons ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
KS ci ratio: 3.992850e-02	ci left: 3.186588e-01	ci right 3.316921e-01	k: 6503	n:20000
RGS3   20000 perm   5 sec   (4208 perm/sec)   p_kst 3.251500e-01   p_cons 1.287000e-01   p_joint 1.908000e-01

Outputting figure to mutsig2_images.part000000000146/RGS3.9_4373_20000_0.32515_0.1287_0.1908.png
                gene_name: RGS3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 12 percent done.
RHBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
RHBG   10000 perm   2 sec   (5274 perm/sec)   p_kst 8.322000e-01   p_cons 5.898000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHBG.9_1418_10000_0.8322_0.5898_1.png
                gene_name: RHBG
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
RFX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.735622e-02	ci left: 5.141557e-01	ci right 5.338303e-01	k: 5240	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
RFX6   10000 perm   2 sec   (4730 perm/sec)   p_kst 2.788000e-01   p_cons 4.948000e-01   p_joint 5.240000e-01

Outputting figure to mutsig2_images.part000000000146/RFX6.8_2863_10000_0.2788_0.4948_0.524.png
                gene_name: RFX6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 16 percent done.
RFX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
Cons ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
KS ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
RFX4   10000 perm   2 sec   (4990 perm/sec)   p_kst 2.284000e-01   p_cons 1.950000e-01   p_joint 2.400000e-01

Outputting figure to mutsig2_images.part000000000146/RFX4.7_2485_10000_0.2284_0.195_0.24.png
                gene_name: RFX4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 17 percent done.
RGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
Cons ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
KS ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
RGS1   10000 perm   2 sec   (6267 perm/sec)   p_kst 3.175000e-01   p_cons 3.825000e-01   p_joint 3.447000e-01

Outputting figure to mutsig2_images.part000000000146/RGS1.7_650_10000_0.3175_0.3825_0.3447.png
                gene_name: RGS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
RFX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
Cons ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KS ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
RFX5   10000 perm   2 sec   (5449 perm/sec)   p_kst 4.605000e-01   p_cons 6.567000e-01   p_joint 6.731000e-01

Outputting figure to mutsig2_images.part000000000146/RFX5.6_1887_10000_0.4605_0.6567_0.6731.png
                gene_name: RFX5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 21 percent done.
RGS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.285505e-02	ci left: 2.162545e-01	ci right 2.327063e-01	k: 2244	n:10000
Cons ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
RGS8   10000 perm   2 sec   (5488 perm/sec)   p_kst 3.560000e-01   p_cons 7.410000e-02   p_joint 2.244000e-01

Joint ci ratio: 5.798570e-02	ci left: 1.805789e-01	ci right 1.914126e-01	k: 3719	n:20000
Cons ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
KS ci ratio: 3.737491e-02	ci left: 3.481656e-01	ci right 3.614766e-01	k: 7096	n:20000
RGS8   20000 perm   4 sec   (4932 perm/sec)   p_kst 3.548000e-01   p_cons 7.460000e-02   p_joint 1.859500e-01

Outputting figure to mutsig2_images.part000000000146/RGS8.6_651_20000_0.3548_0.0746_0.18595.png
                gene_name: RGS8
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 22 percent done.
RHCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
Cons ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
KS ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
RHCG   10000 perm   2 sec   (5563 perm/sec)   p_kst 3.949000e-01   p_cons 1.353000e-01   p_joint 2.498000e-01

Outputting figure to mutsig2_images.part000000000146/RHCG.6_1480_10000_0.3949_0.1353_0.2498.png
                gene_name: RHCG
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
RFTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
Cons ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
KS ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
RFTN1   10000 perm   2 sec   (5687 perm/sec)   p_kst 3.596000e-01   p_cons 8.440000e-02   p_joint 1.823000e-01

Joint ci ratio: 5.746443e-02	ci left: 1.832979e-01	ci right 1.941927e-01	k: 3774	n:20000
Cons ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
KS ci ratio: 3.709900e-02	ci left: 3.515510e-01	ci right 3.648902e-01	k: 7164	n:20000
RFTN1   20000 perm   4 sec   (5078 perm/sec)   p_kst 3.582000e-01   p_cons 7.835000e-02   p_joint 1.887000e-01

Outputting figure to mutsig2_images.part000000000146/RFTN1.5_1773_20000_0.3582_0.07835_0.1887.png
                gene_name: RFTN1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 26 percent done.
RGS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
RGS18   10000 perm   2 sec   (5975 perm/sec)   p_kst 6.169000e-01   p_cons 7.996000e-01   p_joint 7.888000e-01

Outputting figure to mutsig2_images.part000000000146/RGS18.5_728_10000_0.6169_0.7996_0.7888.png
                gene_name: RGS18
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 28 percent done.
RGS20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
KS ci ratio: 2.105514e-02	ci left: 7.678000e-01	ci right 7.842389e-01	k: 7761	n:10000
RGS20   10000 perm   2 sec   (6323 perm/sec)   p_kst 7.761000e-01   p_cons 5.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS20.5_1264_10000_0.7761_0.5441_1.png
                gene_name: RGS20
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
RGS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
RGS5   10000 perm   2 sec   (6588 perm/sec)   p_kst 2.055000e-01   p_cons 4.551000e-01   p_joint 3.354000e-01

Outputting figure to mutsig2_images.part000000000146/RGS5.5_566_10000_0.2055_0.4551_0.3354.png
                gene_name: RGS5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
RGS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 1.958236e-02	ci left: 7.923276e-01	ci right 8.080971e-01	k: 8003	n:10000
RGS9   10000 perm   2 sec   (5094 perm/sec)   p_kst 8.003000e-01   p_cons 8.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS9.5_2156_10000_0.8003_0.8808_1.png
                gene_name: RGS9
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
RHBDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
RHBDF2   10000 perm   2 sec   (5774 perm/sec)   p_kst 6.990000e-02   p_cons 1.457000e-01   p_joint 3.430000e-02

Joint ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
Cons ci ratio: 6.715852e-02	ci left: 1.406400e-01	ci right 1.504633e-01	k: 2910	n:20000
KS ci ratio: 9.943628e-02	ci left: 6.850386e-02	ci right 7.572114e-02	k: 1441	n:20000
RHBDF2   20000 perm   4 sec   (5088 perm/sec)   p_kst 7.205000e-02   p_cons 1.455000e-01   p_joint 8.830000e-02

Outputting figure to mutsig2_images.part000000000146/RHBDF2.5_2639_20000_0.07205_0.1455_0.0883.png
                gene_name: RHBDF2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 34 percent done.
RHOBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
Cons ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
KS ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
RHOBTB1   10000 perm   2 sec   (5641 perm/sec)   p_kst 2.351000e-01   p_cons 9.825000e-01   p_joint 4.123000e-01

Outputting figure to mutsig2_images.part000000000146/RHOBTB1.5_2127_10000_0.2351_0.9825_0.4123.png
                gene_name: RHOBTB1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 36 percent done.
RFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
RFT1   10000 perm   2 sec   (5856 perm/sec)   p_kst 7.219000e-01   p_cons 3.790000e-02   p_joint 1.533000e-01

Joint ci ratio: 6.847146e-02	ci left: 1.359578e-01	ci right 1.456469e-01	k: 2815	n:20000
Cons ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
KS ci ratio: 1.766081e-02	ci left: 7.049140e-01	ci right 7.175246e-01	k: 14225	n:20000
RFT1   20000 perm   4 sec   (5279 perm/sec)   p_kst 7.112500e-01   p_cons 3.455000e-02   p_joint 1.407500e-01

Joint ci ratio: 5.726322e-02	ci left: 1.312178e-01	ci right 1.389864e-01	k: 4052	n:30000
Cons ci ratio: 1.184857e-01	ci left: 3.311072e-02	ci right 3.731324e-02	k: 1055	n:30000
KS ci ratio: 1.343714e-02	ci left: 7.343595e-01	ci right 7.443274e-01	k: 22181	n:30000
RFT1   30000 perm   6 sec   (5052 perm/sec)   p_kst 7.393667e-01   p_cons 3.516667e-02   p_joint 1.350667e-01

Joint ci ratio: 4.729391e-02	ci left: 1.430975e-01	ci right 1.500539e-01	k: 5862	n:40000
Cons ci ratio: 1.034141e-01	ci left: 3.287904e-02	ci right 3.648892e-02	k: 1386	n:40000
KS ci ratio: 1.162686e-02	ci left: 7.353701e-01	ci right 7.439951e-01	k: 29588	n:40000
RFT1   40000 perm   8 sec   (4899 perm/sec)   p_kst 7.397000e-01   p_cons 3.465000e-02   p_joint 1.465500e-01

Joint ci ratio: 3.977781e-02	ci left: 1.593951e-01	ci right 1.658841e-01	k: 8131	n:50000
Cons ci ratio: 9.061170e-02	ci left: 3.444280e-02	ci right 3.773135e-02	k: 1803	n:50000
KS ci ratio: 1.039778e-02	ci left: 7.358903e-01	ci right 7.436019e-01	k: 36988	n:50000
RFT1   50000 perm   10 sec   (4776 perm/sec)   p_kst 7.397600e-01   p_cons 3.606000e-02   p_joint 1.626200e-01

Outputting figure to mutsig2_images.part000000000146/RFT1.4_1678_50000_0.73976_0.03606_0.16262.png
                gene_name: RFT1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
RG9MTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
KS ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
RG9MTD1   10000 perm   2 sec   (6409 perm/sec)   p_kst 8.698000e-01   p_cons 1.302000e-01   p_joint 4.118000e-01

Joint ci ratio: 3.523387e-02	ci left: 3.755079e-01	ci right 3.890263e-01	k: 7645	n:20000
Cons ci ratio: 7.365539e-02	ci left: 1.194622e-01	ci right 1.286474e-01	k: 2480	n:20000
KS ci ratio: 1.080081e-02	ci left: 8.634333e-01	ci right 8.728594e-01	k: 17364	n:20000
RG9MTD1   20000 perm   3 sec   (5718 perm/sec)   p_kst 8.682000e-01   p_cons 1.240000e-01   p_joint 3.822500e-01

Outputting figure to mutsig2_images.part000000000146/RG9MTD1.4_1216_20000_0.8682_0.124_0.38225.png
                gene_name: RG9MTD1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
RGAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
Cons ci ratio: 6.620037e-02	ci left: 2.509293e-01	ci right 2.682110e-01	k: 2595	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
RGAG4   10000 perm   2 sec   (6588 perm/sec)   p_kst 4.256000e-01   p_cons 2.595000e-01   p_joint 3.432000e-01

Outputting figure to mutsig2_images.part000000000146/RGAG4.4_1714_10000_0.4256_0.2595_0.3432.png
                gene_name: RGAG4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
RGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
RGL1   10000 perm   2 sec   (5546 perm/sec)   p_kst 1.327000e-01   p_cons 8.610000e-02   p_joint 1.964000e-01

Joint ci ratio: 6.705073e-02	ci left: 1.410344e-01	ci right 1.508688e-01	k: 2918	n:20000
Cons ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
KS ci ratio: 7.154726e-02	ci left: 1.258113e-01	ci right 1.351964e-01	k: 2609	n:20000
RGL1   20000 perm   4 sec   (4997 perm/sec)   p_kst 1.304500e-01   p_cons 9.135000e-02   p_joint 1.459000e-01

Outputting figure to mutsig2_images.part000000000146/RGL1.4_2484_20000_0.13045_0.09135_0.1459.png
                gene_name: RGL1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 43 percent done.
RGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
Cons ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
KS ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
RGL2   10000 perm   2 sec   (5428 perm/sec)   p_kst 2.506000e-01   p_cons 2.101000e-01   p_joint 2.175000e-01

Outputting figure to mutsig2_images.part000000000146/RGL2.4_2402_10000_0.2506_0.2101_0.2175.png
                gene_name: RGL2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 45 percent done.
RGS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
Cons ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
KS ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
RGS12   10000 perm   2 sec   (4816 perm/sec)   p_kst 2.771000e-01   p_cons 2.422000e-01   p_joint 3.162000e-01

Outputting figure to mutsig2_images.part000000000146/RGS12.4_4487_10000_0.2771_0.2422_0.3162.png
                gene_name: RGS12
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 47 percent done.
RGS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
KS ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
RGS4   10000 perm   2 sec   (6026 perm/sec)   p_kst 1.202000e-01   p_cons 3.455000e-01   p_joint 1.277000e-01

Joint ci ratio: 5.903108e-02	ci left: 1.752903e-01	ci right 1.860027e-01	k: 3612	n:20000
Cons ci ratio: 3.824367e-02	ci left: 3.377628e-01	ci right 3.509825e-01	k: 6887	n:20000
KS ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
RGS4   20000 perm   4 sec   (5393 perm/sec)   p_kst 1.213500e-01   p_cons 3.443500e-01   p_joint 1.806000e-01

Outputting figure to mutsig2_images.part000000000146/RGS4.4_933_20000_0.12135_0.34435_0.1806.png
                gene_name: RGS4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 48 percent done.
RHAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
Cons ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
KS ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
RHAG   10000 perm   2 sec   (6261 perm/sec)   p_kst 4.035000e-01   p_cons 9.708000e-01   p_joint 6.119000e-01

Outputting figure to mutsig2_images.part000000000146/RHAG.4_1270_10000_0.4035_0.9708_0.6119.png
                gene_name: RHAG
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 50 percent done.
RHBDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
Cons ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
KS ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
RHBDD1   10000 perm   2 sec   (5957 perm/sec)   p_kst 1.151000e-01   p_cons 6.676000e-01   p_joint 2.733000e-01

Joint ci ratio: 4.699444e-02	ci left: 2.519963e-01	ci right 2.641741e-01	k: 5161	n:20000
Cons ci ratio: 1.941729e-02	ci left: 6.642379e-01	ci right 6.773125e-01	k: 13416	n:20000
KS ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
RHBDD1   20000 perm   4 sec   (5173 perm/sec)   p_kst 1.162500e-01   p_cons 6.708000e-01   p_joint 2.580500e-01

Outputting figure to mutsig2_images.part000000000146/RHBDD1.4_972_20000_0.11625_0.6708_0.25805.png
                gene_name: RHBDD1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 52 percent done.
RHEB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
Cons ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
KS ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
RHEB   10000 perm   2 sec   (6403 perm/sec)   p_kst 7.565000e-01   p_cons 4.440000e-02   p_joint 2.008000e-01

Joint ci ratio: 5.875341e-02	ci left: 1.766741e-01	ci right 1.874185e-01	k: 3640	n:20000
Cons ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
KS ci ratio: 1.560419e-02	ci left: 7.533631e-01	ci right 7.652614e-01	k: 15187	n:20000
RHEB   20000 perm   4 sec   (5699 perm/sec)   p_kst 7.593500e-01   p_cons 4.350000e-02   p_joint 1.820000e-01

Joint ci ratio: 4.878492e-02	ci left: 1.727619e-01	ci right 1.814341e-01	k: 5312	n:30000
Cons ci ratio: 1.062525e-01	ci left: 4.108949e-02	ci right 4.573279e-02	k: 1301	n:30000
KS ci ratio: 1.272975e-02	ci left: 7.547899e-01	ci right 7.644931e-01	k: 22790	n:30000
RHEB   30000 perm   6 sec   (5412 perm/sec)   p_kst 7.596667e-01   p_cons 4.336667e-02   p_joint 1.770667e-01

Joint ci ratio: 3.831565e-02	ci left: 2.034107e-01	ci right 2.113818e-01	k: 8295	n:40000
Cons ci ratio: 9.087449e-02	ci left: 4.242651e-02	ci right 4.648996e-02	k: 1777	n:40000
KS ci ratio: 1.101800e-02	ci left: 7.556576e-01	ci right 7.640546e-01	k: 30395	n:40000
RHEB   40000 perm   8 sec   (5244 perm/sec)   p_kst 7.598750e-01   p_cons 4.442500e-02   p_joint 2.073750e-01

Outputting figure to mutsig2_images.part000000000146/RHEB.4_587_40000_0.75987_0.044425_0.20738.png
                gene_name: RHEB
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 53 percent done.
RHOBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
RHOBTB2   10000 perm   2 sec   (5701 perm/sec)   p_kst 2.299000e-01   p_cons 2.940000e-02   p_joint 7.900000e-02

Joint ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
Cons ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
KS ci ratio: 4.989977e-02	ci left: 2.298810e-01	ci right 2.416959e-01	k: 4715	n:20000
RHOBTB2   20000 perm   4 sec   (5174 perm/sec)   p_kst 2.357500e-01   p_cons 3.020000e-02   p_joint 9.615000e-02

Joint ci ratio: 8.182361e-02	ci left: 6.815148e-02	ci right 7.399858e-02	k: 2131	n:30000
Cons ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
KS ci ratio: 4.094385e-02	ci left: 2.292184e-01	ci right 2.388331e-01	k: 7020	n:30000
RHOBTB2   30000 perm   6 sec   (4958 perm/sec)   p_kst 2.340000e-01   p_cons 2.776667e-02   p_joint 7.103333e-02

Joint ci ratio: 1.066001e-01	ci left: 3.095424e-02	ci right 3.446403e-02	k: 1307	n:40000
Cons ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
KS ci ratio: 3.580900e-02	ci left: 2.263800e-01	ci right 2.346592e-01	k: 9220	n:40000
RHOBTB2   40000 perm   8 sec   (4811 perm/sec)   p_kst 2.305000e-01   p_cons 2.735000e-02   p_joint 3.267500e-02

Joint ci ratio: 9.037808e-02	ci left: 3.461887e-02	ci right 3.791526e-02	k: 1812	n:50000
Cons ci ratio: 1.047207e-01	ci left: 2.583068e-02	ci right 2.870456e-02	k: 1362	n:50000
KS ci ratio: 3.199836e-02	ci left: 2.271523e-01	ci right 2.345590e-01	k: 11542	n:50000
RHOBTB2   50000 perm   11 sec   (4691 perm/sec)   p_kst 2.308400e-01   p_cons 2.724000e-02   p_joint 3.624000e-02

Joint ci ratio: 8.137700e-02	ci left: 3.571613e-02	ci right 3.876218e-02	k: 2233	n:60000
Cons ci ratio: 9.573509e-02	ci left: 2.588044e-02	ci right 2.849889e-02	k: 1630	n:60000
KS ci ratio: 2.911693e-02	ci left: 2.286106e-01	ci right 2.353820e-01	k: 13919	n:60000
RHOBTB2   60000 perm   13 sec   (4590 perm/sec)   p_kst 2.319833e-01   p_cons 2.716667e-02   p_joint 3.721667e-02

Outputting figure to mutsig2_images.part000000000146/RHOBTB2.4_2305_60000_0.23198_0.027167_0.037217.png
                gene_name: RHOBTB2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 55 percent done.
RHOJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
Cons ci ratio: 4.138712e-02	ci left: 4.629738e-01	ci right 4.826420e-01	k: 4728	n:10000
KS ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
RHOJ   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.071000e-01   p_cons 4.728000e-01   p_joint 5.139000e-01

Outputting figure to mutsig2_images.part000000000146/RHOJ.4_665_10000_0.4071_0.4728_0.5139.png
                gene_name: RHOJ
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 57 percent done.
RFPL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
KS ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
RFPL4B   10000 perm   2 sec   (6404 perm/sec)   p_kst 8.439000e-01   p_cons 7.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFPL4B.3_796_10000_0.8439_0.7197_1.png
                gene_name: RFPL4B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
RFWD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
RFWD2   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.474000e-01   p_cons 1.424000e-01   p_joint 7.369000e-01

Outputting figure to mutsig2_images.part000000000146/RFWD2.3_2276_10000_0.5474_0.1424_0.7369.png
                gene_name: RFWD2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 60 percent done.
RFWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
RFWD3   10000 perm   2 sec   (5709 perm/sec)   p_kst 5.811000e-01   p_cons 9.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFWD3.3_2373_10000_0.5811_0.9819_1.png
                gene_name: RFWD3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
RFX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
Cons ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
RFX3   10000 perm   2 sec   (5616 perm/sec)   p_kst 4.564000e-01   p_cons 2.831000e-01   p_joint 4.905000e-01

Outputting figure to mutsig2_images.part000000000146/RFX3.3_2470_10000_0.4564_0.2831_0.4905.png
                gene_name: RFX3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 64 percent done.
RGMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
Cons ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
KS ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
RGMB   10000 perm   2 sec   (6246 perm/sec)   p_kst 5.200000e-03   p_cons 3.683000e-01   p_joint 2.430000e-02

Joint ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
Cons ci ratio: 3.711110e-02	ci left: 3.514016e-01	ci right 3.647397e-01	k: 7161	n:20000
KS ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
RGMB   20000 perm   4 sec   (5570 perm/sec)   p_kst 5.300000e-03   p_cons 3.580500e-01   p_joint 1.640000e-02

Joint ci ratio: 2.499256e-01	ci left: 7.116901e-03	ci right 9.180058e-03	k: 243	n:30000
Cons ci ratio: 3.032084e-02	ci left: 3.523398e-01	ci right 3.632211e-01	k: 10733	n:30000
KS ci ratio: 3.052577e-01	ci left: 4.633018e-03	ci right 6.331580e-03	k: 163	n:30000
RGMB   30000 perm   6 sec   (5322 perm/sec)   p_kst 5.433333e-03   p_cons 3.577667e-01   p_joint 8.100000e-03

Joint ci ratio: 2.481443e-01	ci left: 5.430825e-03	ci right 6.992166e-03	k: 247	n:40000
Cons ci ratio: 2.622151e-02	ci left: 3.537235e-01	ci right 3.631470e-01	k: 14337	n:40000
KS ci ratio: 2.691479e-01	ci left: 4.565414e-03	ci right 6.007842e-03	k: 210	n:40000
RGMB   40000 perm   8 sec   (5144 perm/sec)   p_kst 5.250000e-03   p_cons 3.584250e-01   p_joint 6.175000e-03

Joint ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
Cons ci ratio: 2.347414e-02	ci left: 3.538161e-01	ci right 3.622404e-01	k: 17901	n:50000
KS ci ratio: 2.397081e-01	ci left: 4.682435e-03	ci right 5.976019e-03	k: 265	n:50000
RGMB   50000 perm   10 sec   (5009 perm/sec)   p_kst 5.300000e-03   p_cons 3.580200e-01   p_joint 6.180000e-03

Joint ci ratio: 2.469081e-01	ci left: 3.667021e-03	ci right 4.715164e-03	k: 250	n:60000
Cons ci ratio: 2.087196e-02	ci left: 3.663511e-01	ci right 3.740948e-01	k: 22213	n:60000
KS ci ratio: 2.168510e-01	ci left: 4.829295e-03	ci right 6.019314e-03	k: 324	n:60000
RGMB   60000 perm   12 sec   (4882 perm/sec)   p_kst 5.400000e-03   p_cons 3.702167e-01   p_joint 4.166667e-03

Joint ci ratio: 1.841943e-01	ci left: 5.836284e-03	ci right 7.033753e-03	k: 449	n:70000
Cons ci ratio: 1.928722e-02	ci left: 3.675195e-01	ci right 3.746912e-01	k: 25977	n:70000
KS ci ratio: 1.994908e-01	ci left: 4.938407e-03	ci right 6.046048e-03	k: 383	n:70000
RGMB   70000 perm   15 sec   (4773 perm/sec)   p_kst 5.471429e-03   p_cons 3.711000e-01   p_joint 6.414286e-03

Joint ci ratio: 2.115144e-01	ci left: 3.822859e-03	ci right 4.738665e-03	k: 341	n:80000
Cons ci ratio: 1.804451e-02	ci left: 3.676760e-01	ci right 3.743834e-01	k: 29682	n:80000
KS ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
RGMB   80000 perm   17 sec   (4674 perm/sec)   p_kst 5.537500e-03   p_cons 3.710250e-01   p_joint 4.262500e-03

Joint ci ratio: 1.993528e-01	ci left: 3.851319e-03	ci right 4.714446e-03	k: 384	n:90000
Cons ci ratio: 1.700215e-02	ci left: 3.681532e-01	ci right 3.744773e-01	k: 33418	n:90000
KS ci ratio: 1.755265e-01	ci left: 5.027257e-03	ci right 6.005030e-03	k: 495	n:90000
RGMB   90000 perm   20 sec   (4582 perm/sec)   p_kst 5.500000e-03   p_cons 3.713111e-01   p_joint 4.266667e-03

Joint ci ratio: 2.198188e-01	ci left: 2.821620e-03	ci right 3.527684e-03	k: 316	n:100000
Cons ci ratio: 1.612973e-02	ci left: 3.683142e-01	ci right 3.743133e-01	k: 37131	n:100000
KS ci ratio: 1.657814e-01	ci left: 5.098935e-03	ci right 6.030096e-03	k: 555	n:100000
RGMB   100000 perm   22 sec   (4493 perm/sec)   p_kst 5.550000e-03   p_cons 3.713100e-01   p_joint 3.160000e-03

Joint ci ratio: 1.458142e-01	ci left: 6.051136e-03	ci right 7.011524e-03	k: 717	n:110000
Cons ci ratio: 1.537945e-02	ci left: 3.684437e-01	ci right 3.741631e-01	k: 40843	n:110000
KS ci ratio: 1.582748e-01	ci left: 5.106407e-03	ci right 5.992696e-03	k: 609	n:110000
RGMB   110000 perm   25 sec   (4419 perm/sec)   p_kst 5.536364e-03   p_cons 3.713000e-01   p_joint 6.518182e-03

Joint ci ratio: 1.398109e-01	ci left: 6.053120e-03	ci right 6.970973e-03	k: 780	n:120000
Cons ci ratio: 1.469796e-02	ci left: 3.694140e-01	ci right 3.748921e-01	k: 44658	n:120000
KS ci ratio: 1.525139e-01	ci left: 5.057303e-03	ci right 5.900200e-03	k: 656	n:120000
RGMB   120000 perm   28 sec   (4347 perm/sec)   p_kst 5.466667e-03   p_cons 3.721500e-01   p_joint 6.500000e-03

Joint ci ratio: 1.338557e-01	ci left: 6.114971e-03	ci right 6.999564e-03	k: 851	n:130000
Cons ci ratio: 1.413264e-02	ci left: 3.691489e-01	ci right 3.744107e-01	k: 48331	n:130000
KS ci ratio: 1.458880e-01	ci left: 5.120010e-03	ci right 5.933055e-03	k: 717	n:130000
RGMB   130000 perm   30 sec   (4279 perm/sec)   p_kst 5.515385e-03   p_cons 3.717769e-01   p_joint 6.546154e-03

Joint ci ratio: 1.294517e-01	ci left: 6.085731e-03	ci right 6.934902e-03	k: 910	n:140000
Cons ci ratio: 1.360749e-02	ci left: 3.696242e-01	ci right 3.746954e-01	k: 52102	n:140000
KS ci ratio: 1.409696e-01	ci left: 5.105507e-03	ci right 5.886617e-03	k: 768	n:140000
RGMB   140000 perm   33 sec   (4211 perm/sec)   p_kst 5.485714e-03   p_cons 3.721571e-01   p_joint 6.500000e-03

Joint ci ratio: 1.010471e-01	ci left: 9.431131e-03	ci right 1.044128e-02	k: 1489	n:150000
Cons ci ratio: 1.315427e-02	ci left: 3.694200e-01	ci right 3.743183e-01	k: 55780	n:150000
KS ci ratio: 1.355237e-01	ci left: 5.170628e-03	ci right 5.928677e-03	k: 831	n:150000
RGMB   150000 perm   36 sec   (4148 perm/sec)   p_kst 5.540000e-03   p_cons 3.718667e-01   p_joint 9.926667e-03

Joint ci ratio: 9.738558e-02	ci left: 9.536532e-03	ci right 1.051884e-02	k: 1603	n:160000
Cons ci ratio: 1.275187e-02	ci left: 3.689381e-01	ci right 3.736791e-01	k: 59409	n:160000
KS ci ratio: 1.312550e-01	ci left: 5.179746e-03	ci right 5.913346e-03	k: 886	n:160000
RGMB   160000 perm   39 sec   (4094 perm/sec)   p_kst 5.537500e-03   p_cons 3.713063e-01   p_joint 1.001875e-02

Joint ci ratio: 9.401234e-02	ci left: 9.647350e-03	ci right 1.060476e-02	k: 1720	n:170000
Cons ci ratio: 1.237037e-02	ci left: 3.690378e-01	ci right 3.736372e-01	k: 63127	n:170000
KS ci ratio: 1.264911e-01	ci left: 5.262175e-03	ci right 5.978372e-03	k: 954	n:170000
RGMB   170000 perm   42 sec   (4038 perm/sec)   p_kst 5.611765e-03   p_cons 3.713353e-01   p_joint 1.011765e-02

Joint ci ratio: 9.124316e-02	ci left: 9.686643e-03	ci right 1.061812e-02	k: 1826	n:180000
Cons ci ratio: 1.201332e-02	ci left: 3.694335e-01	ci right 3.739040e-01	k: 66900	n:180000
KS ci ratio: 1.226334e-01	ci left: 5.298168e-03	ci right 5.995676e-03	k: 1015	n:180000
RGMB   180000 perm   45 sec   (3981 perm/sec)   p_kst 5.638889e-03   p_cons 3.716667e-01   p_joint 1.014444e-02

Joint ci ratio: 1.090687e-01	ci left: 6.384176e-03	ci right 7.125730e-03	k: 1282	n:190000
Cons ci ratio: 1.169946e-02	ci left: 3.692320e-01	ci right 3.735824e-01	k: 70567	n:190000
KS ci ratio: 1.192199e-01	ci left: 5.320455e-03	ci right 6.000025e-03	k: 1074	n:190000
RGMB   190000 perm   49 sec   (3914 perm/sec)   p_kst 5.652632e-03   p_cons 3.714053e-01   p_joint 6.747368e-03

Joint ci ratio: 1.065267e-01	ci left: 6.366606e-03	ci right 7.087803e-03	k: 1344	n:200000
Cons ci ratio: 1.140666e-02	ci left: 3.691469e-01	ci right 3.733868e-01	k: 74253	n:200000
KS ci ratio: 1.168037e-01	ci left: 5.272783e-03	ci right 5.931672e-03	k: 1119	n:200000
RGMB   200000 perm   52 sec   (3853 perm/sec)   p_kst 5.595000e-03   p_cons 3.712650e-01   p_joint 6.720000e-03

Joint ci ratio: 1.041173e-01	ci left: 6.355530e-03	ci right 7.058191e-03	k: 1407	n:210000
Cons ci ratio: 1.113184e-02	ci left: 3.691949e-01	ci right 3.733324e-01	k: 77965	n:210000
KS ci ratio: 1.142332e-01	ci left: 5.257535e-03	ci right 5.899085e-03	k: 1170	n:210000
RGMB   210000 perm   55 sec   (3794 perm/sec)   p_kst 5.571429e-03   p_cons 3.712619e-01   p_joint 6.700000e-03

Joint ci ratio: 1.019690e-01	ci left: 6.332337e-03	ci right 7.017122e-03	k: 1467	n:220000
Cons ci ratio: 1.088540e-02	ci left: 3.688356e-01	ci right 3.728769e-01	k: 81588	n:220000
KS ci ratio: 1.118713e-01	ci left: 5.239399e-03	ci right 5.864646e-03	k: 1220	n:220000
RGMB   220000 perm   59 sec   (3742 perm/sec)   p_kst 5.545455e-03   p_cons 3.708545e-01   p_joint 6.668182e-03

Joint ci ratio: 9.968608e-02	ci left: 6.345216e-03	ci right 7.015133e-03	k: 1535	n:230000
Cons ci ratio: 1.064688e-02	ci left: 3.688472e-01	ci right 3.727996e-01	k: 85289	n:230000
KS ci ratio: 1.094339e-01	ci left: 5.244112e-03	ci right 5.855406e-03	k: 1275	n:230000
RGMB   230000 perm   62 sec   (3689 perm/sec)   p_kst 5.543478e-03   p_cons 3.708217e-01   p_joint 6.673913e-03

Joint ci ratio: 9.733631e-02	ci left: 6.385640e-03	ci right 7.043025e-03	k: 1610	n:240000
Cons ci ratio: 1.041957e-02	ci left: 3.690294e-01	ci right 3.728987e-01	k: 89031	n:240000
KS ci ratio: 1.069876e-01	ci left: 5.264790e-03	ci right 5.863912e-03	k: 1334	n:240000
RGMB   240000 perm   66 sec   (3636 perm/sec)   p_kst 5.558333e-03   p_cons 3.709625e-01   p_joint 6.708333e-03

Joint ci ratio: 9.545925e-02	ci left: 6.380041e-03	ci right 7.023476e-03	k: 1674	n:250000
Cons ci ratio: 1.022173e-02	ci left: 3.684905e-01	ci right 3.722805e-01	k: 92596	n:250000
KS ci ratio: 1.049636e-01	ci left: 5.256684e-03	ci right 5.842868e-03	k: 1386	n:250000
RGMB   250000 perm   70 sec   (3586 perm/sec)   p_kst 5.544000e-03   p_cons 3.703840e-01   p_joint 6.696000e-03

Joint ci ratio: 9.374104e-02	ci left: 6.367473e-03	ci right 6.997446e-03	k: 1736	n:260000
Cons ci ratio: 1.002636e-02	ci left: 3.683819e-01	ci right 3.720979e-01	k: 96262	n:260000
KS ci ratio: 1.030864e-01	ci left: 5.245553e-03	ci right 5.819400e-03	k: 1437	n:260000
RGMB   260000 perm   74 sec   (3537 perm/sec)   p_kst 5.526923e-03   p_cons 3.702385e-01   p_joint 6.676923e-03

Joint ci ratio: 9.183017e-02	ci left: 6.395741e-03	ci right 7.014919e-03	k: 1809	n:270000
Cons ci ratio: 9.834514e-03	ci left: 3.686261e-01	ci right 3.722730e-01	k: 100021	n:270000
KS ci ratio: 1.006962e-01	ci left: 5.300324e-03	ci right 5.865924e-03	k: 1506	n:270000
RGMB   270000 perm   77 sec   (3491 perm/sec)   p_kst 5.577778e-03   p_cons 3.704481e-01   p_joint 6.700000e-03

Joint ci ratio: 9.037043e-02	ci left: 6.373232e-03	ci right 6.979904e-03	k: 1868	n:280000
Cons ci ratio: 9.650984e-03	ci left: 3.689641e-01	ci right 3.725457e-01	k: 103811	n:280000
KS ci ratio: 9.916337e-02	ci left: 5.274685e-03	ci right 5.828482e-03	k: 1553	n:280000
RGMB   280000 perm   81 sec   (3443 perm/sec)   p_kst 5.546429e-03   p_cons 3.707536e-01   p_joint 6.671429e-03

Outputting figure to mutsig2_images.part000000000146/RGMB.3_1453_280000_0.0055464_0.37075_0.0066714.png
                gene_name: RGMB
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0053 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0070 

Current progress: 66 percent done.
RGNEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
Cons ci ratio: 1.333732e-02	ci left: 8.901588e-01	ci right 9.022093e-01	k: 8963	n:10000
KS ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
RGNEF   10000 perm   2 sec   (4773 perm/sec)   p_kst 1.688000e-01   p_cons 8.963000e-01   p_joint 4.822000e-01

Outputting figure to mutsig2_images.part000000000146/RGNEF.3_5340_10000_0.1688_0.8963_0.4822.png
                gene_name: RGNEF
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 67 percent done.
RHBDF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
RHBDF1   10000 perm   2 sec   (5805 perm/sec)   p_kst 6.377000e-01   p_cons 4.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHBDF1.3_2636_10000_0.6377_0.4146_1.png
                gene_name: RHBDF1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
RHBDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
KS ci ratio: 4.018633e-02	ci left: 4.776581e-01	ci right 4.973492e-01	k: 4875	n:10000
RHBDL1   10000 perm   2 sec   (6242 perm/sec)   p_kst 4.875000e-01   p_cons 3.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHBDL1.3_1345_10000_0.4875_0.3504_1.png
                gene_name: RHBDL1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
RHPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
RHPN1   10000 perm   2 sec   (5816 perm/sec)   p_kst 3.972000e-01   p_cons 9.992000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000146/RHPN1.3_2073_10000_0.3972_0.9992_0.5983.png
                gene_name: RHPN1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 72 percent done.
RFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648870e-02	ci left: 8.425440e-01	ci right 8.566516e-01	k: 8497	n:10000
Cons ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KS ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
RFX1   10000 perm   2 sec   (5834 perm/sec)   p_kst 8.222000e-01   p_cons 5.338000e-01   p_joint 8.497000e-01

Outputting figure to mutsig2_images.part000000000146/RFX1.2_3020_10000_0.8222_0.5338_0.8497.png
                gene_name: RFX1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 74 percent done.
RFX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
RFX2   10000 perm   2 sec   (6101 perm/sec)   p_kst 6.610000e-01   p_cons 5.266000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFX2.2_2240_10000_0.661_0.5266_1.png
                gene_name: RFX2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
RFX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.140611e-02	ci left: 7.619276e-01	ci right 7.785147e-01	k: 7703	n:10000
KS ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
RFX7   10000 perm   2 sec   (5360 perm/sec)   p_kst 3.792000e-01   p_cons 7.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFX7.2_4419_10000_0.3792_0.7703_1.png
                gene_name: RFX7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
RG9MTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
KS ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
RG9MTD2   10000 perm   1 sec   (6736 perm/sec)   p_kst 8.107000e-01   p_cons 4.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RG9MTD2.2_1048_10000_0.8107_0.4954_1.png
                gene_name: RG9MTD2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RGL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
KS ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
RGL3   10000 perm   2 sec   (6135 perm/sec)   p_kst 9.289000e-01   p_cons 5.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGL3.2_2227_10000_0.9289_0.5186_1.png
                gene_name: RGL3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
RGN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 83 percent done.
RGS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
RGS13   10000 perm   1 sec   (7151 perm/sec)   p_kst 2.320000e-02   p_cons 3.503000e-01   p_joint 3.590000e-02

Joint ci ratio: 1.187710e-01	ci left: 4.857450e-02	ci right 5.475667e-02	k: 1032	n:20000
Cons ci ratio: 3.818024e-02	ci left: 3.385093e-01	ci right 3.517357e-01	k: 6902	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
RGS13   20000 perm   3 sec   (6299 perm/sec)   p_kst 2.270000e-02   p_cons 3.451000e-01   p_joint 5.160000e-02

Joint ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
Cons ci ratio: 3.027033e-02	ci left: 3.531038e-01	ci right 3.639902e-01	k: 10756	n:30000
KS ci ratio: 1.467433e-01	ci left: 2.152616e-02	ci right 2.496703e-02	k: 696	n:30000
RGS13   30000 perm   5 sec   (5918 perm/sec)   p_kst 2.320000e-02   p_cons 3.585333e-01   p_joint 7.063333e-02

Joint ci ratio: 1.263886e-02	ci left: 7.018093e-01	ci right 7.107608e-01	k: 28252	n:40000
Cons ci ratio: 2.618023e-02	ci left: 3.544464e-01	ci right 3.638741e-01	k: 14366	n:40000
KS ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
RGS13   40000 perm   7 sec   (5673 perm/sec)   p_kst 2.322500e-02   p_cons 3.591500e-01   p_joint 7.063000e-01

Joint ci ratio: 1.313073e-02	ci left: 6.363762e-01	ci right 6.448075e-01	k: 32030	n:50000
Cons ci ratio: 2.348947e-02	ci left: 3.535169e-01	ci right 3.619396e-01	k: 17886	n:50000
KS ci ratio: 1.153388e-01	ci left: 2.127617e-02	ci right 2.389966e-02	k: 1128	n:50000
RGS13   50000 perm   9 sec   (5492 perm/sec)   p_kst 2.256000e-02   p_cons 3.577200e-01   p_joint 6.406000e-01

Joint ci ratio: 1.195548e-02	ci left: 6.379484e-01	ci right 6.456379e-01	k: 38508	n:60000
Cons ci ratio: 2.149927e-02	ci left: 3.526829e-01	ci right 3.603644e-01	k: 21391	n:60000
KS ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
RGS13   60000 perm   11 sec   (5353 perm/sec)   p_kst 2.238333e-02   p_cons 3.565167e-01   p_joint 6.418000e-01

Joint ci ratio: 8.611798e-03	ci left: 7.442356e-01	ci right 7.506867e-01	k: 52323	n:70000
Cons ci ratio: 1.985086e-02	ci left: 3.542050e-01	ci right 3.613211e-01	k: 25043	n:70000
KS ci ratio: 9.756150e-02	ci left: 2.144195e-02	ci right 2.365502e-02	k: 1577	n:70000
RGS13   70000 perm   13 sec   (5234 perm/sec)   p_kst 2.252857e-02   p_cons 3.577571e-01   p_joint 7.474714e-01

Outputting figure to mutsig2_images.part000000000146/RGS13.2_496_70000_0.022529_0.35776_0.74747.png
                gene_name: RGS13
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 84 percent done.
RGS21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
KS ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
RGS21   10000 perm   1 sec   (7006 perm/sec)   p_kst 7.557000e-01   p_cons 8.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS21.2_475_10000_0.7557_0.8633_1.png
                gene_name: RGS21
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
RGS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
KS ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
RGS6   10000 perm   2 sec   (6335 perm/sec)   p_kst 6.632000e-01   p_cons 9.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS6.2_1483_10000_0.6632_0.9041_1.png
                gene_name: RGS6
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RGS7BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
Cons ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
KS ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
RGS7BP   10000 perm   1 sec   (7013 perm/sec)   p_kst 9.700000e-01   p_cons 1.068000e-01   p_joint 9.913000e-01

Joint ci ratio: 2.550868e-03	ci left: 9.902898e-01	ci right 9.928642e-01	k: 19833	n:20000
Cons ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
KS ci ratio: 4.823582e-03	ci left: 9.682163e-01	ci right 9.729456e-01	k: 19413	n:20000
RGS7BP   20000 perm   3 sec   (6163 perm/sec)   p_kst 9.706500e-01   p_cons 1.075500e-01   p_joint 9.916500e-01

Outputting figure to mutsig2_images.part000000000146/RGS7BP.2_798_20000_0.97065_0.10755_0.99165.png
                gene_name: RGS7BP
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
RHBDL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
Cons ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
RHBDL3   10000 perm   2 sec   (6502 perm/sec)   p_kst 1.063000e-01   p_cons 1.158000e-01   p_joint 1.886000e-01

Joint ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
Cons ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
KS ci ratio: 8.146729e-02	ci left: 9.950760e-02	ci right 1.080080e-01	k: 2074	n:20000
RHBDL3   20000 perm   3 sec   (5763 perm/sec)   p_kst 1.037000e-01   p_cons 1.189500e-01   p_joint 1.891500e-01

Outputting figure to mutsig2_images.part000000000146/RHBDL3.2_1251_20000_0.1037_0.11895_0.18915.png
                gene_name: RHBDL3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
RHCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
Cons ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
KS ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
RHCE   10000 perm   2 sec   (6532 perm/sec)   p_kst 6.170000e-01   p_cons 1.370000e-02   p_joint 5.280000e-02

Joint ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
Cons ci ratio: 2.410476e-01	ci left: 1.147624e-02	ci right 1.466766e-02	k: 260	n:20000
KS ci ratio: 2.151551e-02	ci left: 6.172443e-01	ci right 6.307196e-01	k: 12480	n:20000
RHCE   20000 perm   3 sec   (5750 perm/sec)   p_kst 6.240000e-01   p_cons 1.300000e-02   p_joint 1.765000e-02

Joint ci ratio: 9.289111e-02	ci left: 5.342467e-02	ci right 5.866173e-02	k: 1680	n:30000
Cons ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
KS ci ratio: 1.749408e-02	ci left: 6.204626e-01	ci right 6.314463e-01	k: 18779	n:30000
RHCE   30000 perm   5 sec   (5460 perm/sec)   p_kst 6.259667e-01   p_cons 2.220000e-02   p_joint 5.600000e-02

Joint ci ratio: 1.102704e-01	ci left: 2.893381e-02	ci right 3.233478e-02	k: 1224	n:40000
Cons ci ratio: 1.325399e-01	ci left: 1.997997e-02	ci right 2.284010e-02	k: 855	n:40000
KS ci ratio: 1.511299e-02	ci left: 6.223645e-01	ci right 6.318670e-01	k: 25085	n:40000
RHCE   40000 perm   8 sec   (5271 perm/sec)   p_kst 6.271250e-01   p_cons 2.137500e-02   p_joint 3.060000e-02

Joint ci ratio: 1.097038e-01	ci left: 2.353237e-02	ci right 2.628317e-02	k: 1244	n:50000
Cons ci ratio: 1.200465e-01	ci left: 1.962519e-02	ci right 2.215087e-02	k: 1043	n:50000
KS ci ratio: 1.346166e-02	ci left: 6.248085e-01	ci right 6.332965e-01	k: 31453	n:50000
RHCE   50000 perm   10 sec   (5121 perm/sec)   p_kst 6.290600e-01   p_cons 2.086000e-02   p_joint 2.488000e-02

Joint ci ratio: 9.037880e-02	ci left: 2.902437e-02	ci right 3.178796e-02	k: 1823	n:60000
Cons ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
KS ci ratio: 1.231892e-02	ci left: 6.240346e-01	ci right 6.317864e-01	k: 37675	n:60000
RHCE   60000 perm   12 sec   (5002 perm/sec)   p_kst 6.279167e-01   p_cons 2.091667e-02   p_joint 3.038333e-02

Joint ci ratio: 9.146009e-02	ci left: 2.440065e-02	ci right 2.675319e-02	k: 1789	n:70000
Cons ci ratio: 1.023412e-01	ci left: 1.947696e-02	ci right 2.159161e-02	k: 1436	n:70000
KS ci ratio: 1.140240e-02	ci left: 6.244357e-01	ci right 6.316108e-01	k: 43962	n:70000
RHCE   70000 perm   14 sec   (4897 perm/sec)   p_kst 6.280286e-01   p_cons 2.051429e-02   p_joint 2.555714e-02

Joint ci ratio: 6.380894e-02	ci left: 4.361068e-02	ci right 4.649743e-02	k: 3603	n:80000
Cons ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
KS ci ratio: 1.066350e-02	ci left: 6.247776e-01	ci right 6.314881e-01	k: 50251	n:80000
RHCE   80000 perm   17 sec   (4797 perm/sec)   p_kst 6.281375e-01   p_cons 2.043750e-02   p_joint 4.503750e-02

Outputting figure to mutsig2_images.part000000000146/RHCE.2_1294_80000_0.62814_0.020438_0.045038.png
                gene_name: RHCE
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 93 percent done.
RHOH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
Cons ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
KS ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
RHOH   10000 perm   1 sec   (7006 perm/sec)   p_kst 6.881000e-01   p_cons 2.135000e-01   p_joint 7.625000e-01

Outputting figure to mutsig2_images.part000000000146/RHOH.2_580_10000_0.6881_0.2135_0.7625.png
                gene_name: RHOH
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 95 percent done.
RHOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
KS ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
RHOT1   10000 perm   2 sec   (6118 perm/sec)   p_kst 8.441000e-01   p_cons 3.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHOT1.2_2160_10000_0.8441_0.35_1.png
                gene_name: RHOT1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RHOU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
KS ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
RHOU   10000 perm   1 sec   (6781 perm/sec)   p_kst 7.821000e-01   p_cons 4.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHOU.2_789_10000_0.7821_0.4555_1.png
                gene_name: RHOU
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RHOXF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
Cons ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
KS ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
RHOXF1   10000 perm   1 sec   (7040 perm/sec)   p_kst 2.716000e-01   p_cons 8.419000e-01   p_joint 4.339000e-01

Outputting figure to mutsig2_images.part000000000146/RHOXF1.2_567_10000_0.2716_0.8419_0.4339.png
                gene_name: RHOXF1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000146
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 146 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1546>
Subject: Job 4422383: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1546>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000147> was used as the working directory.
Started at Wed Oct 24 18:06:22 2012
Results reported at Wed Oct 24 18:20:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000147.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000147.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 147  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000147.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    988.64 sec.
    Max Memory :      5364 MB
    Max Swap   :      7954 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
147
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 147
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 147: processing genes 13210 - 13299
Calculating significance of each gene.
Using projection method.
13210	RHPN2	8.641762e-01
13211	RIBC1	5.492085e-01
13212	RIBC2	1
13213	RIC3	6.585116e-02
13214	RIC8A	9.225436e-01
13215	RIC8B	9.580640e-01
13216	RICH2	2.211506e-01
13217	RICTOR	9.991805e-01
13218	RIF1	9.568770e-01
13219	RILP	2.893662e-01
13220	RILPL1	7.363762e-01
13221	RILPL2	6.692932e-01
13222	RIMBP2	5.574638e-01
13223	RIMKLA	7.844814e-01
13224	RIMKLB	9.223314e-01
13225	RIMS1	3.028153e-01
13226	RIMS2	2.987519e-09
13227	RIMS3	1.326282e-01
13228	RIMS4	6.035410e-04
13229	RIN1	2.788222e-01
13230	RIN2	9.930804e-01
13231	RIN3	8.676103e-01
13232	RING1	1
13233	RINL	8.411799e-01
13234	RINT1	9.507971e-01
13235	RIOK1	8.101263e-02
13236	RIOK2	8.032660e-02
13237	RIOK3	9.329266e-01
13238	RIPK1	5.400162e-01
13239	RIPK2	1
13240	RIPK3	4.277945e-01
13241	RIPK4	6.383083e-01
13242	RIPPLY1	3.927802e-01
13243	RIPPLY2	2.121172e-02
13244	RIT1	5.104036e-06
13245	RIT2	6.457861e-04
13246	RLBP1	9.136939e-01
13247	RLF	1
13248	RLIM	7.191103e-02
13249	RLN1	1
13250	RLN2	1.755481e-01
13251	RLN3	1
13252	RLTPR	9.202730e-01
13253	RMI1	9.634068e-01
13254	RMND1	9.398585e-01
13255	RMND5A	1
13256	RMND5B	5.850890e-01
13257	RNASE1	1
13258	RNASE10	6.436823e-01
13259	RNASE11	1
13260	RNASE12	1.226781e-01
13261	RNASE13	1.459222e-01
13262	RNASE2	4.672440e-02
13263	RNASE3	5.226120e-01
13264	RNASE4	1
13265	RNASE6	1
13266	RNASE7	1
13267	RNASE8	4.489416e-01
13268	RNASE9	5.435250e-01
13269	RNASEH1	5.562095e-01
13270	RNASEH2A	1
13271	RNASEH2B	6.947379e-01
13272	RNASEH2C	1
13273	RNASEK	1
13274	RNASEL	4.032895e-01
13275	RNASEN	2.924322e-01
13276	RNASET2	4.537884e-01
13277	RND1	1
13278	RND2	1
13279	RND3	1.636796e-01
13280	RNF10	9.314457e-01
13281	RNF103	3.208518e-01
13282	RNF11	1
13283	RNF111	9.285117e-01
13284	RNF112	6.750625e-01
13285	RNF113A	5.208891e-01
13286	RNF113B	7.643568e-01
13287	RNF114	1
13288	RNF115	5.056871e-01
13289	RNF121	3.046521e-01
13290	RNF122	1
13291	RNF123	9.417911e-01
13292	RNF125	1
13293	RNF126	1
13294	RNF128	3.031359e-01
13295	RNF13	7.697991e-01
13296	RNF130	2.270068e-01
13297	RNF133	3.514892e-01
13298	RNF135	1
13299	RNF138	1.214272e-01
Done

Running MutSig 2:
Scatter job 147: processing genes 13210 - 13299
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RIMS2
Processing conservation and coverage...
Processing mutations... 
Skipping 6 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
Cons ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
RIMS2   10000 perm   4 sec   (2552 perm/sec)   p_kst 1.335000e-01   p_cons 1.416000e-01   p_joint 1.225000e-01

Joint ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
Cons ci ratio: 6.871304e-02	ci left: 1.351201e-01	ci right 1.447848e-01	k: 2798	n:20000
KS ci ratio: 6.931891e-02	ci left: 1.330508e-01	ci right 1.426547e-01	k: 2756	n:20000
RIMS2   20000 perm   12 sec   (1678 perm/sec)   p_kst 1.378000e-01   p_cons 1.399000e-01   p_joint 9.535000e-02

Outputting figure to mutsig2_images.part000000000147/RIMS2.39_4342_20000_0.1378_0.1399_0.09535.png
                gene_name: RIMS2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.100 

Current progress: 2 percent done.
RICTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
Cons ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
KS ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
RICTOR   10000 perm   3 sec   (3322 perm/sec)   p_kst 5.898000e-01   p_cons 1.013000e-01   p_joint 2.569000e-01

Joint ci ratio: 4.866496e-02	ci left: 2.389526e-01	ci right 2.509216e-01	k: 4898	n:20000
Cons ci ratio: 8.357263e-02	ci left: 9.494340e-02	ci right 1.032736e-01	k: 1981	n:20000
KS ci ratio: 2.332809e-02	ci left: 5.784852e-01	ci right 5.921900e-01	k: 11707	n:20000
RICTOR   20000 perm   7 sec   (3070 perm/sec)   p_kst 5.853500e-01   p_cons 9.905000e-02   p_joint 2.449000e-01

Outputting figure to mutsig2_images.part000000000147/RICTOR.19_5279_20000_0.58535_0.09905_0.2449.png
                gene_name: RICTOR
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 4 percent done.
RIMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
Cons ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
KS ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
RIMBP2   10000 perm   3 sec   (3528 perm/sec)   p_kst 3.484000e-01   p_cons 3.138000e-01   p_joint 3.169000e-01

Outputting figure to mutsig2_images.part000000000147/RIMBP2.17_3227_10000_0.3484_0.3138_0.3169.png
                gene_name: RIMBP2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
RIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KS ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
RIF1   10000 perm   3 sec   (2897 perm/sec)   p_kst 2.560000e-02   p_cons 3.240000e-02   p_joint 1.100000e-02

Joint ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
Cons ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
KS ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
RIF1   20000 perm   7 sec   (2714 perm/sec)   p_kst 2.540000e-02   p_cons 3.245000e-02   p_joint 1.515000e-02

Joint ci ratio: 2.139407e-01	ci left: 9.882165e-03	ci right 1.228060e-02	k: 331	n:30000
Cons ci ratio: 1.214369e-01	ci left: 3.152481e-02	ci right 3.563283e-02	k: 1006	n:30000
KS ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
RIF1   30000 perm   11 sec   (2646 perm/sec)   p_kst 2.603333e-02   p_cons 3.353333e-02   p_joint 1.103333e-02

Joint ci ratio: 1.500535e-01	ci left: 1.551503e-02	ci right 1.805582e-02	k: 670	n:40000
Cons ci ratio: 1.054390e-01	ci left: 3.163626e-02	ci right 3.518190e-02	k: 1335	n:40000
KS ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
RIF1   40000 perm   15 sec   (2599 perm/sec)   p_kst 2.567500e-02   p_cons 3.337500e-02   p_joint 1.675000e-02

Joint ci ratio: 1.422519e-01	ci left: 1.389490e-02	ci right 1.604195e-02	k: 747	n:50000
Cons ci ratio: 9.498651e-02	ci left: 3.137321e-02	ci right 3.452132e-02	k: 1646	n:50000
KS ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
RIF1   50000 perm   20 sec   (2554 perm/sec)   p_kst 2.532000e-02   p_cons 3.292000e-02   p_joint 1.494000e-02

Joint ci ratio: 1.390812e-01	ci left: 1.215720e-02	ci right 1.399035e-02	k: 783	n:60000
Cons ci ratio: 8.699315e-02	ci left: 3.130755e-02	ci right 3.417121e-02	k: 1963	n:60000
KS ci ratio: 9.883058e-02	ci left: 2.428584e-02	ci right 2.682700e-02	k: 1532	n:60000
RIF1   60000 perm   24 sec   (2520 perm/sec)   p_kst 2.553333e-02   p_cons 3.271667e-02   p_joint 1.305000e-02

Joint ci ratio: 1.092139e-01	ci left: 1.708358e-02	ci right 1.907094e-02	k: 1264	n:70000
Cons ci ratio: 8.041923e-02	ci left: 3.150681e-02	ci right 3.416068e-02	k: 2297	n:70000
KS ci ratio: 9.172336e-02	ci left: 2.426098e-02	ci right 2.660715e-02	k: 1779	n:70000
RIF1   70000 perm   28 sec   (2489 perm/sec)   p_kst 2.541429e-02   p_cons 3.281429e-02   p_joint 1.805714e-02

Joint ci ratio: 1.063870e-01	ci left: 1.579898e-02	ci right 1.758632e-02	k: 1334	n:80000
Cons ci ratio: 7.552748e-02	ci left: 3.134331e-02	ci right 3.381574e-02	k: 2605	n:80000
KS ci ratio: 8.597926e-02	ci left: 2.423505e-02	ci right 2.642455e-02	k: 2025	n:80000
RIF1   80000 perm   33 sec   (2460 perm/sec)   p_kst 2.531250e-02   p_cons 3.256250e-02   p_joint 1.667500e-02

Joint ci ratio: 1.084843e-01	ci left: 1.352366e-02	ci right 1.508565e-02	k: 1286	n:90000
Cons ci ratio: 7.120490e-02	ci left: 3.141655e-02	ci right 3.374703e-02	k: 2931	n:90000
KS ci ratio: 8.134170e-02	ci left: 2.413135e-02	ci right 2.618830e-02	k: 2263	n:90000
RIF1   90000 perm   37 sec   (2432 perm/sec)   p_kst 2.514444e-02   p_cons 3.256667e-02   p_joint 1.428889e-02

Joint ci ratio: 1.028079e-01	ci left: 1.359276e-02	ci right 1.507561e-02	k: 1432	n:100000
Cons ci ratio: 6.767749e-02	ci left: 3.136035e-02	ci right 3.356688e-02	k: 3245	n:100000
KS ci ratio: 7.826856e-02	ci left: 2.351140e-02	ci right 2.543632e-02	k: 2446	n:100000
RIF1   100000 perm   42 sec   (2406 perm/sec)   p_kst 2.446000e-02   p_cons 3.245000e-02   p_joint 1.432000e-02

Joint ci ratio: 1.094914e-01	ci left: 1.088713e-02	ci right 1.215700e-02	k: 1266	n:110000
Cons ci ratio: 6.420899e-02	ci left: 3.171943e-02	ci right 3.383257e-02	k: 3604	n:110000
KS ci ratio: 7.431123e-02	ci left: 2.375509e-02	ci right 2.559736e-02	k: 2713	n:110000
RIF1   110000 perm   46 sec   (2382 perm/sec)   p_kst 2.466364e-02   p_cons 3.276364e-02   p_joint 1.150909e-02

Joint ci ratio: 1.029689e-01	ci left: 1.131849e-02	ci right 1.255527e-02	k: 1431	n:120000
Cons ci ratio: 6.296162e-02	ci left: 3.030556e-02	ci right 3.228384e-02	k: 3754	n:120000
KS ci ratio: 6.857545e-02	ci left: 2.559853e-02	ci right 2.742445e-02	k: 3180	n:120000
RIF1   120000 perm   51 sec   (2355 perm/sec)   p_kst 2.650000e-02   p_cons 3.128333e-02   p_joint 1.192500e-02

Joint ci ratio: 1.039754e-01	ci left: 1.025272e-02	ci right 1.138465e-02	k: 1405	n:130000
Cons ci ratio: 6.026954e-02	ci left: 3.056472e-02	ci right 3.247163e-02	k: 4096	n:130000
KS ci ratio: 6.616263e-02	ci left: 2.542170e-02	ci right 2.716875e-02	k: 3417	n:130000
RIF1   130000 perm   56 sec   (2331 perm/sec)   p_kst 2.628462e-02   p_cons 3.150769e-02   p_joint 1.080769e-02

Joint ci ratio: 1.017730e-01	ci left: 9.951764e-03	ci right 1.102580e-02	k: 1467	n:140000
Cons ci ratio: 5.786866e-02	ci left: 3.081657e-02	ci right 3.266003e-02	k: 4442	n:140000
KS ci ratio: 6.380867e-02	ci left: 2.541174e-02	ci right 2.709367e-02	k: 3674	n:140000
RIF1   140000 perm   61 sec   (2307 perm/sec)   p_kst 2.624286e-02   p_cons 3.172857e-02   p_joint 1.047857e-02

Joint ci ratio: 9.794072e-02	ci left: 1.004886e-02	ci right 1.109019e-02	k: 1584	n:150000
Cons ci ratio: 5.595112e-02	ci left: 3.079938e-02	ci right 3.257878e-02	k: 4752	n:150000
KS ci ratio: 6.154479e-02	ci left: 2.552227e-02	ci right 2.714944e-02	k: 3949	n:150000
RIF1   150000 perm   66 sec   (2285 perm/sec)   p_kst 2.632667e-02   p_cons 3.168000e-02   p_joint 1.056000e-02

Outputting figure to mutsig2_images.part000000000147/RIF1.14_7559_150000_0.026327_0.03168_0.01056.png
                gene_name: RIF1
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 7 percent done.
RIMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
Cons ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
KS ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
RIMS1   10000 perm   3 sec   (3829 perm/sec)   p_kst 3.655000e-01   p_cons 7.930000e-02   p_joint 1.402000e-01

Joint ci ratio: 6.242218e-02	ci left: 1.595342e-01	ci right 1.698635e-01	k: 3293	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 3.653694e-02	ci left: 3.585719e-01	ci right 3.719673e-01	k: 7305	n:20000
RIMS1   20000 perm   6 sec   (3406 perm/sec)   p_kst 3.652500e-01   p_cons 8.740000e-02   p_joint 1.646500e-01

Outputting figure to mutsig2_images.part000000000147/RIMS1.12_5378_20000_0.36525_0.0874_0.16465.png
                gene_name: RIMS1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 9 percent done.
RNASEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
KS ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
RNASEN   10000 perm   3 sec   (3612 perm/sec)   p_kst 1.805000e-01   p_cons 2.730000e-02   p_joint 7.570000e-02

Joint ci ratio: 1.457587e-01	ci left: 3.235107e-02	ci right 3.748530e-02	k: 697	n:20000
Cons ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
KS ci ratio: 6.011001e-02	ci left: 1.700529e-01	ci right 1.806416e-01	k: 3506	n:20000
RNASEN   20000 perm   6 sec   (3342 perm/sec)   p_kst 1.753000e-01   p_cons 3.430000e-02   p_joint 3.485000e-02

Joint ci ratio: 1.177366e-01	ci left: 3.353168e-02	ci right 3.775886e-02	k: 1068	n:30000
Cons ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
KS ci ratio: 4.931591e-02	ci left: 1.696591e-01	ci right 1.782708e-01	k: 5218	n:30000
RNASEN   30000 perm   9 sec   (3235 perm/sec)   p_kst 1.739333e-01   p_cons 3.330000e-02   p_joint 3.560000e-02

Joint ci ratio: 7.297958e-02	ci left: 6.481457e-02	ci right 6.974848e-02	k: 2690	n:40000
Cons ci ratio: 1.038414e-01	ci left: 3.261093e-02	ci right 3.620707e-02	k: 1375	n:40000
KS ci ratio: 4.134406e-02	ci left: 1.796925e-01	ci right 1.873035e-01	k: 7339	n:40000
RNASEN   40000 perm   13 sec   (3149 perm/sec)   p_kst 1.834750e-01   p_cons 3.437500e-02   p_joint 6.725000e-02

Joint ci ratio: 8.399676e-02	ci left: 3.998406e-02	ci right 4.350940e-02	k: 2086	n:50000
Cons ci ratio: 9.279499e-02	ci left: 3.285868e-02	ci right 3.607566e-02	k: 1722	n:50000
KS ci ratio: 3.859370e-02	ci left: 1.677288e-01	ci right 1.743494e-01	k: 8551	n:50000
RNASEN   50000 perm   16 sec   (3101 perm/sec)   p_kst 1.710200e-01   p_cons 3.444000e-02   p_joint 4.172000e-02

Outputting figure to mutsig2_images.part000000000147/RNASEN.12_4257_50000_0.17102_0.03444_0.04172.png
                gene_name: RNASEN
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 11 percent done.
RIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
Cons ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
KS ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
RIT1   10000 perm   2 sec   (5146 perm/sec)   p_kst 7.710000e-02   p_cons 3.781000e-01   p_joint 1.453000e-01

Joint ci ratio: 6.781419e-02	ci left: 1.382740e-01	ci right 1.480299e-01	k: 2862	n:20000
Cons ci ratio: 3.594557e-02	ci left: 3.661422e-01	ci right 3.795948e-01	k: 7457	n:20000
KS ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
RIT1   20000 perm   4 sec   (4602 perm/sec)   p_kst 7.520000e-02   p_cons 3.728500e-01   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000147/RIT1.10_680_20000_0.0752_0.37285_0.1431.png
                gene_name: RIT1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 13 percent done.
RLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KS ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
RLF   10000 perm   3 sec   (3483 perm/sec)   p_kst 1.244000e-01   p_cons 7.160000e-01   p_joint 2.420000e-01

Joint ci ratio: 5.415324e-02	ci left: 2.019472e-01	ci right 2.132379e-01	k: 4151	n:20000
Cons ci ratio: 1.730237e-02	ci left: 7.133180e-01	ci right 7.258181e-01	k: 14392	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
RLF   20000 perm   6 sec   (3253 perm/sec)   p_kst 1.225000e-01   p_cons 7.196000e-01   p_joint 2.075500e-01

Outputting figure to mutsig2_images.part000000000147/RLF.10_5777_20000_0.1225_0.7196_0.20755.png
                gene_name: RLF
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 15 percent done.
RIMS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
Cons ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
KS ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
RIMS4   10000 perm   2 sec   (5314 perm/sec)   p_kst 6.237000e-01   p_cons 7.520000e-01   p_joint 8.161000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS4.8_834_10000_0.6237_0.752_0.8161.png
                gene_name: RIMS4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 17 percent done.
RIOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
Cons ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
RIOK2   10000 perm   2 sec   (4942 perm/sec)   p_kst 2.100000e-02   p_cons 7.487000e-01   p_joint 4.970000e-02

Joint ci ratio: 1.252327e-01	ci left: 4.376838e-02	ci right 4.966431e-02	k: 933	n:20000
Cons ci ratio: 1.612267e-02	ci left: 7.411160e-01	ci right 7.532121e-01	k: 14944	n:20000
KS ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
RIOK2   20000 perm   5 sec   (4411 perm/sec)   p_kst 1.940000e-02   p_cons 7.472000e-01   p_joint 4.665000e-02

Joint ci ratio: 1.244748e-01	ci left: 3.000484e-02	ci right 3.401980e-02	k: 959	n:30000
Cons ci ratio: 1.285986e-02	ci left: 7.510315e-01	ci right 7.607856e-01	k: 22678	n:30000
KS ci ratio: 1.659150e-01	ci left: 1.674946e-02	ci right 1.981151e-02	k: 547	n:30000
RIOK2   30000 perm   7 sec   (4205 perm/sec)   p_kst 1.823333e-02   p_cons 7.559333e-01   p_joint 3.196667e-02

Joint ci ratio: 8.818310e-02	ci left: 4.499537e-02	ci right 4.917070e-02	k: 1882	n:40000
Cons ci ratio: 1.112817e-02	ci left: 7.519864e-01	ci right 7.604264e-01	k: 30249	n:40000
KS ci ratio: 1.433544e-01	ci left: 1.703317e-02	ci right 1.968741e-02	k: 733	n:40000
RIOK2   40000 perm   10 sec   (4067 perm/sec)   p_kst 1.832500e-02   p_cons 7.562250e-01   p_joint 4.705000e-02

Joint ci ratio: 9.037808e-02	ci left: 3.461887e-02	ci right 3.791526e-02	k: 1812	n:50000
Cons ci ratio: 9.983715e-03	ci left: 7.513060e-01	ci right 7.588644e-01	k: 37755	n:50000
KS ci ratio: 1.308982e-01	ci left: 1.646551e-02	ci right 1.879098e-02	k: 880	n:50000
RIOK2   50000 perm   13 sec   (3963 perm/sec)   p_kst 1.760000e-02   p_cons 7.551000e-01   p_joint 3.624000e-02

Joint ci ratio: 8.743133e-02	ci left: 3.099757e-02	ci right 3.384789e-02	k: 1944	n:60000
Cons ci ratio: 9.103990e-03	ci left: 7.520404e-01	ci right 7.589349e-01	k: 45330	n:60000
KS ci ratio: 1.198516e-01	ci left: 1.646585e-02	ci right 1.858118e-02	k: 1050	n:60000
RIOK2   60000 perm   15 sec   (3874 perm/sec)   p_kst 1.750000e-02   p_cons 7.555000e-01   p_joint 3.240000e-02

Joint ci ratio: 6.817496e-02	ci left: 4.356036e-02	ci right 4.664892e-02	k: 3156	n:70000
Cons ci ratio: 8.418556e-03	ci left: 7.527432e-01	ci right 7.591213e-01	k: 52916	n:70000
KS ci ratio: 1.102841e-01	ci left: 1.674998e-02	ci right 1.871886e-02	k: 1240	n:70000
RIOK2   70000 perm   18 sec   (3801 perm/sec)   p_kst 1.771429e-02   p_cons 7.559429e-01   p_joint 4.508571e-02

Joint ci ratio: 6.218215e-02	ci left: 4.585151e-02	ci right 4.880643e-02	k: 3785	n:80000
Cons ci ratio: 7.855213e-03	ci left: 7.538744e-01	ci right 7.598320e-01	k: 60549	n:80000
KS ci ratio: 1.027670e-01	ci left: 1.694376e-02	ci right 1.879145e-02	k: 1428	n:80000
RIOK2   80000 perm   21 sec   (3731 perm/sec)   p_kst 1.785000e-02   p_cons 7.568625e-01   p_joint 4.731250e-02

Joint ci ratio: 6.427382e-02	ci left: 3.841179e-02	ci right 4.097355e-02	k: 3571	n:90000
Cons ci ratio: 7.407225e-03	ci left: 7.539833e-01	ci right 7.596001e-01	k: 68112	n:90000
KS ci ratio: 9.567359e-02	ci left: 1.743432e-02	ci right 1.919692e-02	k: 1647	n:90000
RIOK2   90000 perm   25 sec   (3667 perm/sec)   p_kst 1.830000e-02   p_cons 7.568000e-01   p_joint 3.967778e-02

Outputting figure to mutsig2_images.part000000000147/RIOK2.7_1727_90000_0.0183_0.7568_0.039678.png
                gene_name: RIOK2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 19 percent done.
RIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
Cons ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
KS ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
RIT2   10000 perm   2 sec   (5575 perm/sec)   p_kst 2.683000e-01   p_cons 6.570000e-02   p_joint 1.060000e-01

Joint ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
Cons ci ratio: 1.056048e-01	ci left: 6.103661e-02	ci right 6.789068e-02	k: 1288	n:20000
KS ci ratio: 4.699444e-02	ci left: 2.519963e-01	ci right 2.641741e-01	k: 5161	n:20000
RIT2   20000 perm   4 sec   (4960 perm/sec)   p_kst 2.580500e-01   p_cons 6.440000e-02   p_joint 1.072500e-01

Joint ci ratio: 6.164791e-02	ci left: 1.150933e-01	ci right 1.224474e-01	k: 3562	n:30000
Cons ci ratio: 8.525277e-02	ci left: 6.301991e-02	ci right 6.866452e-02	k: 1974	n:30000
KS ci ratio: 3.875538e-02	ci left: 2.493465e-01	ci right 2.592344e-01	k: 7628	n:30000
RIT2   30000 perm   6 sec   (4740 perm/sec)   p_kst 2.542667e-01   p_cons 6.580000e-02   p_joint 1.187333e-01

Outputting figure to mutsig2_images.part000000000147/RIT2.7_674_30000_0.25427_0.0658_0.11873.png
                gene_name: RIT2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
RLIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
Cons ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
KS ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
RLIM   10000 perm   2 sec   (5237 perm/sec)   p_kst 2.017000e-01   p_cons 8.752000e-01   p_joint 2.781000e-01

Outputting figure to mutsig2_images.part000000000147/RLIM.7_1887_10000_0.2017_0.8752_0.2781.png
                gene_name: RLIM
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 22 percent done.
RIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
RIC3   10000 perm   2 sec   (5421 perm/sec)   p_kst 4.380000e-02   p_cons 3.680000e-01   p_joint 5.940000e-02

Joint ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
Cons ci ratio: 3.524133e-02	ci left: 3.754082e-01	ci right 3.889260e-01	k: 7643	n:20000
KS ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
RIC3   20000 perm   4 sec   (4777 perm/sec)   p_kst 4.250000e-02   p_cons 3.821500e-01   p_joint 1.213000e-01

Joint ci ratio: 6.733577e-02	ci left: 9.807193e-02	ci right 1.049388e-01	k: 3044	n:30000
Cons ci ratio: 2.871758e-02	ci left: 3.775938e-01	ci right 3.886289e-01	k: 11493	n:30000
KS ci ratio: 1.072028e-01	ci left: 4.037492e-02	ci right 4.498084e-02	k: 1279	n:30000
RIC3   30000 perm   7 sec   (4560 perm/sec)   p_kst 4.263333e-02   p_cons 3.831000e-01   p_joint 1.014667e-01

Joint ci ratio: 7.479882e-02	ci left: 6.184174e-02	ci right 6.667176e-02	k: 2569	n:40000
Cons ci ratio: 2.491931e-02	ci left: 3.774093e-01	ci right 3.869578e-01	k: 15287	n:40000
KS ci ratio: 9.029144e-02	ci left: 4.296459e-02	ci right 4.705179e-02	k: 1799	n:40000
RIC3   40000 perm   9 sec   (4418 perm/sec)   p_kst 4.497500e-02   p_cons 3.821750e-01   p_joint 6.422500e-02

Outputting figure to mutsig2_images.part000000000147/RIC3.6_1131_40000_0.044975_0.38217_0.064225.png
                gene_name: RIC3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 24 percent done.
RICH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
Cons ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
KS ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
RICH2   10000 perm   2 sec   (4962 perm/sec)   p_kst 4.521000e-01   p_cons 8.717000e-01   p_joint 6.431000e-01

Outputting figure to mutsig2_images.part000000000147/RICH2.6_2541_10000_0.4521_0.8717_0.6431.png
                gene_name: RICH2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 26 percent done.
RIOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
Cons ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
KS ci ratio: 1.006689e-02	ci left: 9.333016e-01	ci right 9.428413e-01	k: 9382	n:10000
RIOK1   10000 perm   2 sec   (5452 perm/sec)   p_kst 9.382000e-01   p_cons 2.122000e-01   p_joint 5.019000e-01

Outputting figure to mutsig2_images.part000000000147/RIOK1.6_1775_10000_0.9382_0.2122_0.5019.png
                gene_name: RIOK1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 28 percent done.
RNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
Cons ci ratio: 2.930814e-02	ci left: 6.319101e-01	ci right 6.508075e-01	k: 6414	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
RNF133   10000 perm   2 sec   (5422 perm/sec)   p_kst 2.770000e-02   p_cons 6.414000e-01   p_joint 7.330000e-02

Joint ci ratio: 7.906498e-02	ci left: 1.051060e-01	ci right 1.138079e-01	k: 2188	n:20000
Cons ci ratio: 2.059444e-02	ci left: 6.376197e-01	ci right 6.509383e-01	k: 12886	n:20000
KS ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
RNF133   20000 perm   4 sec   (4942 perm/sec)   p_kst 2.980000e-02   p_cons 6.443000e-01   p_joint 1.094000e-01

Joint ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
Cons ci ratio: 1.675078e-02	ci left: 6.406249e-01	ci right 6.514801e-01	k: 19382	n:30000
KS ci ratio: 1.287635e-01	ci left: 2.803403e-02	ci right 3.192436e-02	k: 898	n:30000
RNF133   30000 perm   6 sec   (4735 perm/sec)   p_kst 2.993333e-02   p_cons 6.460667e-01   p_joint 6.010000e-02

Joint ci ratio: 7.973899e-02	ci left: 5.469865e-02	ci right 5.926593e-02	k: 2278	n:40000
Cons ci ratio: 1.452151e-02	ci left: 6.408895e-01	ci right 6.502894e-01	k: 25824	n:40000
KS ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
RNF133   40000 perm   9 sec   (4592 perm/sec)   p_kst 2.995000e-02   p_cons 6.456000e-01   p_joint 5.695000e-02

Joint ci ratio: 7.909862e-02	ci left: 4.496505e-02	ci right 4.868779e-02	k: 2340	n:50000
Cons ci ratio: 1.300325e-02	ci left: 6.408676e-01	ci right 6.492755e-01	k: 32254	n:50000
KS ci ratio: 1.041720e-01	ci left: 2.610355e-02	ci right 2.899165e-02	k: 1376	n:50000
RNF133   50000 perm   11 sec   (4454 perm/sec)   p_kst 2.752000e-02   p_cons 6.450800e-01   p_joint 4.680000e-02

Joint ci ratio: 6.330515e-02	ci left: 5.816198e-02	ci right 6.198071e-02	k: 3603	n:60000
Cons ci ratio: 1.186851e-02	ci left: 6.413062e-01	ci right 6.489797e-01	k: 38709	n:60000
KS ci ratio: 9.573509e-02	ci left: 2.588044e-02	ci right 2.849889e-02	k: 1630	n:60000
RNF133   60000 perm   14 sec   (4339 perm/sec)   p_kst 2.716667e-02   p_cons 6.451500e-01   p_joint 6.005000e-02

Outputting figure to mutsig2_images.part000000000147/RNF133.6_1135_60000_0.027167_0.64515_0.06005.png
                gene_name: RNF133
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 30 percent done.
RIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
Cons ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
KS ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
RIN1   10000 perm   2 sec   (4702 perm/sec)   p_kst 5.659000e-01   p_cons 3.403000e-01   p_joint 4.811000e-01

Outputting figure to mutsig2_images.part000000000147/RIN1.5_2392_10000_0.5659_0.3403_0.4811.png
                gene_name: RIN1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 31 percent done.
RIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
KS ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
RIN3   10000 perm   2 sec   (5051 perm/sec)   p_kst 2.402000e-01   p_cons 1.802000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000147/RIN3.5_2998_10000_0.2402_0.1802_0.2918.png
                gene_name: RIN3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 33 percent done.
RIPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
RIPK4   10000 perm   2 sec   (4926 perm/sec)   p_kst 3.324000e-01   p_cons 3.790000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000147/RIPK4.5_2387_10000_0.3324_0.379_0.4118.png
                gene_name: RIPK4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
RNASEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.396041e-02	ci left: 2.111242e-01	ci right 2.274396e-01	k: 2192	n:10000
Cons ci ratio: 3.474760e-03	ci left: 9.903856e-01	ci right 9.939186e-01	k: 9923	n:10000
KS ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
RNASEL   10000 perm   2 sec   (4696 perm/sec)   p_kst 1.143000e-01   p_cons 9.923000e-01   p_joint 2.192000e-01

Joint ci ratio: 5.343936e-02	ci left: 2.063031e-01	ci right 2.176807e-01	k: 4239	n:20000
Cons ci ratio: 2.310174e-03	ci left: 9.919072e-01	ci right 9.942460e-01	k: 19863	n:20000
KS ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
RNASEL   20000 perm   5 sec   (4278 perm/sec)   p_kst 1.113500e-01   p_cons 9.931500e-01   p_joint 2.119500e-01

Outputting figure to mutsig2_images.part000000000147/RNASEL.5_2250_20000_0.11135_0.99315_0.21195.png
                gene_name: RNASEL
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
RNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
Cons ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
KS ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
RNF10   10000 perm   2 sec   (4994 perm/sec)   p_kst 3.856000e-01   p_cons 3.885000e-01   p_joint 5.638000e-01

Outputting figure to mutsig2_images.part000000000147/RNF10.5_2504_10000_0.3856_0.3885_0.5638.png
                gene_name: RNF10
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
RNF103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
Cons ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
RNF103   10000 perm   2 sec   (4772 perm/sec)   p_kst 4.559000e-01   p_cons 3.670000e-02   p_joint 1.385000e-01

Joint ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
Cons ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
KS ci ratio: 3.009641e-02	ci left: 4.519753e-01	ci right 4.658366e-01	k: 9178	n:20000
RNF103   20000 perm   5 sec   (4311 perm/sec)   p_kst 4.589000e-01   p_cons 3.720000e-02   p_joint 8.620000e-02

Joint ci ratio: 6.533576e-02	ci left: 1.036222e-01	ci right 1.106541e-01	k: 3213	n:30000
Cons ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
KS ci ratio: 2.460896e-02	ci left: 4.525495e-01	ci right 4.638586e-01	k: 13746	n:30000
RNF103   30000 perm   7 sec   (4106 perm/sec)   p_kst 4.582000e-01   p_cons 3.780000e-02   p_joint 1.071000e-01

Joint ci ratio: 5.009648e-02	ci left: 1.294144e-01	ci right 1.360890e-01	k: 5309	n:40000
Cons ci ratio: 9.576977e-02	ci left: 3.827156e-02	ci right 4.214555e-02	k: 1607	n:40000
KS ci ratio: 2.131013e-02	ci left: 4.533579e-01	ci right 4.631482e-01	k: 18330	n:40000
RNF103   40000 perm   10 sec   (3987 perm/sec)   p_kst 4.582500e-01   p_cons 4.017500e-02   p_joint 1.327250e-01

Outputting figure to mutsig2_images.part000000000147/RNF103.5_2074_40000_0.45825_0.040175_0.13273.png
                gene_name: RNF103
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 41 percent done.
RNF111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
Cons ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
KS ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
RNF111   10000 perm   2 sec   (4445 perm/sec)   p_kst 2.054000e-01   p_cons 5.985000e-01   p_joint 3.552000e-01

Outputting figure to mutsig2_images.part000000000147/RNF111.5_3013_10000_0.2054_0.5985_0.3552.png
                gene_name: RNF111
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 43 percent done.
RHPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
Cons ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
RHPN2   10000 perm   2 sec   (5654 perm/sec)   p_kst 6.470000e-02   p_cons 7.610000e-02   p_joint 8.750000e-02

Joint ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
Cons ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
KS ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
RHPN2   20000 perm   4 sec   (5001 perm/sec)   p_kst 6.520000e-02   p_cons 7.485000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.258353e-01	ci left: 2.935843e-02	ci right 3.333302e-02	k: 939	n:30000
Cons ci ratio: 7.839325e-02	ci left: 7.390949e-02	ci right 7.997274e-02	k: 2307	n:30000
KS ci ratio: 8.504552e-02	ci left: 6.331395e-02	ci right 6.897043e-02	k: 1983	n:30000
RHPN2   30000 perm   6 sec   (4750 perm/sec)   p_kst 6.610000e-02   p_cons 7.690000e-02   p_joint 3.130000e-02

Joint ci ratio: 1.010238e-01	ci left: 3.443953e-02	ci right 3.812818e-02	k: 1450	n:40000
Cons ci ratio: 6.777553e-02	ci left: 7.455338e-02	ci right 7.980819e-02	k: 3086	n:40000
KS ci ratio: 7.333079e-02	ci left: 6.422480e-02	ci right 6.913833e-02	k: 2666	n:40000
RHPN2   40000 perm   9 sec   (4592 perm/sec)   p_kst 6.665000e-02   p_cons 7.715000e-02   p_joint 3.625000e-02

Joint ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
Cons ci ratio: 6.011333e-02	ci left: 7.601898e-02	ci right 8.075010e-02	k: 3918	n:50000
KS ci ratio: 6.408561e-02	ci left: 6.738453e-02	ci right 7.186559e-02	k: 3480	n:50000
RHPN2   50000 perm   11 sec   (4477 perm/sec)   p_kst 6.960000e-02   p_cons 7.836000e-02   p_joint 3.596000e-02

Outputting figure to mutsig2_images.part000000000147/RHPN2.4_2121_50000_0.0696_0.07836_0.03596.png
                gene_name: RHPN2
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.038 

Current progress: 44 percent done.
RIMS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
Cons ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
KS ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
RIMS3   10000 perm   2 sec   (5742 perm/sec)   p_kst 4.858000e-01   p_cons 9.887000e-01   p_joint 7.665000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS3.4_951_10000_0.4858_0.9887_0.7665.png
                gene_name: RIMS3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 46 percent done.
RIPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
Cons ci ratio: 3.218655e-03	ci left: 9.916107e-01	ci right 9.948920e-01	k: 9934	n:10000
KS ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
RIPK1   10000 perm   2 sec   (5263 perm/sec)   p_kst 5.730000e-02   p_cons 9.934000e-01   p_joint 2.378000e-01

Joint ci ratio: 5.712890e-02	ci left: 1.850779e-01	ci right 1.960122e-01	k: 3810	n:20000
Cons ci ratio: 2.259054e-03	ci left: 9.922323e-01	ci right 9.945208e-01	k: 19869	n:20000
KS ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
RIPK1   20000 perm   4 sec   (4732 perm/sec)   p_kst 5.910000e-02   p_cons 9.934500e-01   p_joint 1.905000e-01

Joint ci ratio: 5.406562e-02	ci left: 1.450539e-01	ci right 1.531475e-01	k: 4472	n:30000
Cons ci ratio: 1.728488e-03	ci left: 9.933102e-01	ci right 9.950587e-01	k: 29827	n:30000
KS ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
RIPK1   30000 perm   7 sec   (4513 perm/sec)   p_kst 5.660000e-02   p_cons 9.942333e-01   p_joint 1.490667e-01

Outputting figure to mutsig2_images.part000000000147/RIPK1.4_2056_30000_0.0566_0.99423_0.14907.png
                gene_name: RIPK1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 48 percent done.
RIPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
RIPK3   10000 perm   2 sec   (5513 perm/sec)   p_kst 5.327000e-01   p_cons 5.432000e-01   p_joint 6.953000e-01

Outputting figure to mutsig2_images.part000000000147/RIPK3.4_1597_10000_0.5327_0.5432_0.6953.png
                gene_name: RIPK3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 50 percent done.
RLTPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
Cons ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
KS ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
RLTPR   10000 perm   2 sec   (4142 perm/sec)   p_kst 4.942000e-01   p_cons 8.380000e-02   p_joint 2.131000e-01

Joint ci ratio: 5.531551e-02	ci left: 1.951185e-01	ci right 2.062687e-01	k: 4013	n:20000
Cons ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
KS ci ratio: 2.814664e-02	ci left: 4.853478e-01	ci right 4.992544e-01	k: 9846	n:20000
RLTPR   20000 perm   5 sec   (3811 perm/sec)   p_kst 4.923000e-01   p_cons 8.470000e-02   p_joint 2.006500e-01

Outputting figure to mutsig2_images.part000000000147/RLTPR.4_4460_20000_0.4923_0.0847_0.20065.png
                gene_name: RLTPR
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
RNASE10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
KS ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
RNASE10   10000 perm   2 sec   (6033 perm/sec)   p_kst 7.405000e-01   p_cons 1.349000e-01   p_joint 5.397000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE10.4_654_10000_0.7405_0.1349_0.5397.png
                gene_name: RNASE10
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 54 percent done.
RNASEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
KS ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
RNASEH1   10000 perm   2 sec   (5920 perm/sec)   p_kst 7.289000e-01   p_cons 7.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASEH1.4_893_10000_0.7289_0.7003_1.png
                gene_name: RNASEH1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
RNF123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
RNF123   10000 perm   2 sec   (4433 perm/sec)   p_kst 4.685000e-01   p_cons 2.963000e-01   p_joint 4.366000e-01

Outputting figure to mutsig2_images.part000000000147/RNF123.4_4097_10000_0.4685_0.2963_0.4366.png
                gene_name: RNF123
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
RNF128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
RNF128   10000 perm   2 sec   (5253 perm/sec)   p_kst 9.602000e-01   p_cons 5.181000e-01   p_joint 8.981000e-01

Outputting figure to mutsig2_images.part000000000147/RNF128.4_1725_10000_0.9602_0.5181_0.8981.png
                gene_name: RNF128
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 59 percent done.
RNF138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
KS ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
RNF138   10000 perm   2 sec   (6316 perm/sec)   p_kst 9.414000e-01   p_cons 6.621000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNF138.4_766_10000_0.9414_0.6621_1.png
                gene_name: RNF138
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
RIC8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
RIC8B   10000 perm   2 sec   (5883 perm/sec)   p_kst 3.738000e-01   p_cons 5.275000e-01   p_joint 8.454000e-01

Outputting figure to mutsig2_images.part000000000147/RIC8B.3_1599_10000_0.3738_0.5275_0.8454.png
                gene_name: RIC8B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 63 percent done.
RIPPLY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
KS ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
RIPPLY2   10000 perm   2 sec   (6620 perm/sec)   p_kst 3.392000e-01   p_cons 2.232000e-01   p_joint 2.469000e-01

Outputting figure to mutsig2_images.part000000000147/RIPPLY2.3_403_10000_0.3392_0.2232_0.2469.png
                gene_name: RIPPLY2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 65 percent done.
RMND5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
Cons ci ratio: 2.112780e-02	ci left: 7.665848e-01	ci right 7.830548e-01	k: 7749	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
RMND5B   10000 perm   2 sec   (6211 perm/sec)   p_kst 5.198000e-01   p_cons 7.749000e-01   p_joint 8.939000e-01

Outputting figure to mutsig2_images.part000000000147/RMND5B.3_1218_10000_0.5198_0.7749_0.8939.png
                gene_name: RMND5B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 67 percent done.
RNASE11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
KS ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
RNASE11   10000 perm   2 sec   (6249 perm/sec)   p_kst 2.193000e-01   p_cons 3.640000e-02   p_joint 7.940000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
KS ci ratio: 5.297197e-02	ci left: 2.092241e-01	ci right 2.206589e-01	k: 4298	n:20000
RNASE11   20000 perm   4 sec   (5477 perm/sec)   p_kst 2.149000e-01   p_cons 3.845000e-02   p_joint 5.435000e-02

Joint ci ratio: 1.186605e-01	ci left: 3.301359e-02	ci right 3.721040e-02	k: 1052	n:30000
Cons ci ratio: 1.124937e-01	ci left: 3.670766e-02	ci right 4.111554e-02	k: 1166	n:30000
KS ci ratio: 4.321958e-02	ci left: 2.105276e-01	ci right 2.198609e-01	k: 6455	n:30000
RNASE11   30000 perm   6 sec   (5176 perm/sec)   p_kst 2.151667e-01   p_cons 3.886667e-02   p_joint 3.506667e-02

Joint ci ratio: 1.330170e-01	ci left: 1.983485e-02	ci right 2.268524e-02	k: 849	n:40000
Cons ci ratio: 9.868338e-02	ci left: 3.607420e-02	ci right 3.984326e-02	k: 1517	n:40000
KS ci ratio: 3.744041e-02	ci left: 2.110568e-01	ci right 2.191346e-01	k: 8603	n:40000
RNASE11   40000 perm   8 sec   (5006 perm/sec)   p_kst 2.150750e-01   p_cons 3.792500e-02   p_joint 2.122500e-02

Joint ci ratio: 1.014396e-01	ci left: 2.752703e-02	ci right 3.048799e-02	k: 1449	n:50000
Cons ci ratio: 8.854457e-02	ci left: 3.604738e-02	ci right 3.940657e-02	k: 1885	n:50000
KS ci ratio: 3.346992e-02	ci left: 2.116641e-01	ci right 2.188890e-01	k: 10763	n:50000
RNASE11   50000 perm   10 sec   (4870 perm/sec)   p_kst 2.152600e-01   p_cons 3.770000e-02   p_joint 2.898000e-02

Joint ci ratio: 1.000084e-01	ci left: 2.371667e-02	ci right 2.622957e-02	k: 1497	n:60000
Cons ci ratio: 8.130143e-02	ci left: 3.578149e-02	ci right 3.883015e-02	k: 2237	n:60000
KS ci ratio: 3.058210e-02	ci left: 2.116686e-01	ci right 2.182590e-01	k: 12897	n:60000
RNASE11   60000 perm   13 sec   (4729 perm/sec)   p_kst 2.149500e-01   p_cons 3.728333e-02   p_joint 2.495000e-02

Joint ci ratio: 9.718412e-02	ci left: 2.160929e-02	ci right 2.383051e-02	k: 1589	n:70000
Cons ci ratio: 7.507665e-02	ci left: 3.607661e-02	ci right 3.890475e-02	k: 2623	n:70000
KS ci ratio: 2.831194e-02	ci left: 2.119329e-01	ci right 2.180336e-01	k: 15048	n:70000
RNASE11   70000 perm   15 sec   (4629 perm/sec)   p_kst 2.149714e-01   p_cons 3.747143e-02   p_joint 2.270000e-02

Outputting figure to mutsig2_images.part000000000147/RNASE11.3_604_70000_0.21497_0.037471_0.0227.png
                gene_name: RNASE11
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 69 percent done.
RNASE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
RNASE2   10000 perm   1 sec   (6742 perm/sec)   p_kst 7.415000e-01   p_cons 7.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASE2.3_490_10000_0.7415_0.7851_1.png
                gene_name: RNASE2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
RND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
Cons ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
RND3   10000 perm   2 sec   (6528 perm/sec)   p_kst 3.243000e-01   p_cons 1.887000e-01   p_joint 3.941000e-01

Outputting figure to mutsig2_images.part000000000147/RND3.3_755_10000_0.3243_0.1887_0.3941.png
                gene_name: RND3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 72 percent done.
RNF121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
Cons ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
KS ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
RNF121   10000 perm   2 sec   (6098 perm/sec)   p_kst 1.755000e-01   p_cons 9.970000e-02   p_joint 1.113000e-01

Joint ci ratio: 5.312942e-02	ci left: 2.082339e-01	ci right 2.196494e-01	k: 4278	n:20000
Cons ci ratio: 8.343253e-02	ci left: 9.523778e-02	ci right 1.035791e-01	k: 1987	n:20000
KS ci ratio: 6.070916e-02	ci left: 1.672373e-01	ci right 1.777580e-01	k: 3449	n:20000
RNF121   20000 perm   4 sec   (5366 perm/sec)   p_kst 1.724500e-01   p_cons 9.935000e-02   p_joint 2.139000e-01

Outputting figure to mutsig2_images.part000000000147/RNF121.3_1020_20000_0.17245_0.09935_0.2139.png
                gene_name: RNF121
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 74 percent done.
RNF130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
Cons ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
RNF130   10000 perm   2 sec   (5830 perm/sec)   p_kst 6.155000e-01   p_cons 9.850000e-01   p_joint 7.282000e-01

Outputting figure to mutsig2_images.part000000000147/RNF130.3_1296_10000_0.6155_0.985_0.7282.png
                gene_name: RNF130
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 76 percent done.
RIBC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
Cons ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
KS ci ratio: 2.114596e-02	ci left: 7.662810e-01	ci right 7.827587e-01	k: 7746	n:10000
RIBC1   10000 perm   2 sec   (6396 perm/sec)   p_kst 7.746000e-01   p_cons 2.908000e-01   p_joint 4.942000e-01

Outputting figure to mutsig2_images.part000000000147/RIBC1.2_1199_10000_0.7746_0.2908_0.4942.png
                gene_name: RIBC1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
RILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
Cons ci ratio: 5.263190e-02	ci left: 3.473041e-01	ci right 3.661794e-01	k: 3567	n:10000
KS ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
RILP   10000 perm   1 sec   (6760 perm/sec)   p_kst 6.903000e-01   p_cons 3.567000e-01   p_joint 4.191000e-01

Outputting figure to mutsig2_images.part000000000147/RILP.2_1238_10000_0.6903_0.3567_0.4191.png
                gene_name: RILP
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 80 percent done.
RIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
KS ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
RIN2   10000 perm   2 sec   (5566 perm/sec)   p_kst 7.538000e-01   p_cons 2.289000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIN2.2_2732_10000_0.7538_0.2289_1.png
                gene_name: RIN2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
RINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
Cons ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
KS ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
RINT1   10000 perm   2 sec   (5881 perm/sec)   p_kst 2.868000e-01   p_cons 4.446000e-01   p_joint 6.568000e-01

Outputting figure to mutsig2_images.part000000000147/RINT1.2_2439_10000_0.2868_0.4446_0.6568.png
                gene_name: RINT1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 83 percent done.
RLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
Cons ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
KS ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
RLN2   10000 perm   1 sec   (7258 perm/sec)   p_kst 2.781000e-01   p_cons 2.341000e-01   p_joint 3.011000e-01

Outputting figure to mutsig2_images.part000000000147/RLN2.2_671_10000_0.2781_0.2341_0.3011.png
                gene_name: RLN2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 85 percent done.
RMI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
Cons ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
RMI1   10000 perm   2 sec   (6064 perm/sec)   p_kst 6.650000e-02   p_cons 7.440000e-01   p_joint 6.207000e-01

Joint ci ratio: 2.098691e-02	ci left: 6.288858e-01	ci right 6.422747e-01	k: 12712	n:20000
Cons ci ratio: 1.645557e-02	ci left: 7.332569e-01	ci right 7.454734e-01	k: 14788	n:20000
KS ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
RMI1   20000 perm   4 sec   (5325 perm/sec)   p_kst 6.780000e-02   p_cons 7.394000e-01   p_joint 6.356000e-01

Joint ci ratio: 2.028523e-02	ci left: 5.488541e-01	ci right 5.601354e-01	k: 16635	n:30000
Cons ci ratio: 1.345805e-02	ci left: 7.337559e-01	ci right 7.437312e-01	k: 22163	n:30000
KS ci ratio: 8.261896e-02	ci left: 6.690901e-02	ci right 7.270797e-02	k: 2093	n:30000
RMI1   30000 perm   6 sec   (5040 perm/sec)   p_kst 6.976667e-02   p_cons 7.387667e-01   p_joint 5.545000e-01

Outputting figure to mutsig2_images.part000000000147/RMI1.2_1882_30000_0.069767_0.73877_0.5545.png
                gene_name: RMI1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 87 percent done.
RMND5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
KS ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
RMND5A   10000 perm   2 sec   (6496 perm/sec)   p_kst 5.952000e-01   p_cons 6.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RMND5A.2_1212_10000_0.5952_0.664_1.png
                gene_name: RMND5A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
RNASE12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
KS ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
RNASE12   10000 perm   1 sec   (6966 perm/sec)   p_kst 9.514000e-01   p_cons 9.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASE12.2_448_10000_0.9514_0.9349_1.png
                gene_name: RNASE12
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
RNASE13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795366e-03	ci left: 9.756767e-01	ci right 9.814398e-01	k: 9787	n:10000
Cons ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
KS ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
RNASE13   10000 perm   1 sec   (6941 perm/sec)   p_kst 7.649000e-01   p_cons 9.472000e-01   p_joint 9.787000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE13.2_475_10000_0.7649_0.9472_0.9787.png
                gene_name: RNASE13
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
RNASET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
Cons ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
RNASET2   10000 perm   1 sec   (6806 perm/sec)   p_kst 3.321000e-01   p_cons 3.971000e-01   p_joint 7.361000e-01

Outputting figure to mutsig2_images.part000000000147/RNASET2.2_807_10000_0.3321_0.3971_0.7361.png
                gene_name: RNASET2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 94 percent done.
RNF112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
RNF112   10000 perm   2 sec   (6171 perm/sec)   p_kst 3.626000e-01   p_cons 7.646000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNF112.2_1662_10000_0.3626_0.7646_1.png
                gene_name: RNF112
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
RNF113A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
KS ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
RNF113A   10000 perm   1 sec   (6904 perm/sec)   p_kst 6.203000e-01   p_cons 8.589000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNF113A.2_1036_10000_0.6203_0.8589_1.png
                gene_name: RNF113A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RNF115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
RNF115   10000 perm   1 sec   (6754 perm/sec)   p_kst 9.087000e-01   p_cons 8.200000e-03   p_joint 4.550000e-02

Joint ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
Cons ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
KS ci ratio: 8.774366e-03	ci left: 9.048783e-01	ci right 9.129023e-01	k: 18179	n:20000
RNF115   20000 perm   3 sec   (5851 perm/sec)   p_kst 9.089500e-01   p_cons 8.100000e-03   p_joint 1.725000e-02

Joint ci ratio: 1.541510e-01	ci left: 1.947147e-02	ci right 2.275552e-02	k: 632	n:30000
Cons ci ratio: 2.478852e-01	ci left: 7.241974e-03	ci right 9.321610e-03	k: 247	n:30000
KS ci ratio: 7.151564e-03	ci left: 9.059261e-01	ci right 9.124610e-01	k: 27277	n:30000
RNF115   30000 perm   5 sec   (5515 perm/sec)   p_kst 9.092333e-01   p_cons 8.233333e-03   p_joint 2.106667e-02

Joint ci ratio: 1.402710e-01	ci left: 1.780527e-02	ci right 2.051517e-02	k: 765	n:40000
Cons ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
KS ci ratio: 6.241281e-03	ci left: 9.050747e-01	ci right 9.107659e-01	k: 36318	n:40000
RNF115   40000 perm   8 sec   (5305 perm/sec)   p_kst 9.079500e-01   p_cons 8.250000e-03   p_joint 1.912500e-02

Joint ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
Cons ci ratio: 1.935128e-01	ci left: 7.352032e-03	ci right 8.945866e-03	k: 406	n:50000
KS ci ratio: 5.583946e-03	ci left: 9.053316e-01	ci right 9.104209e-01	k: 45395	n:50000
RNF115   50000 perm   10 sec   (5142 perm/sec)   p_kst 9.079000e-01   p_cons 8.120000e-03   p_joint 2.206000e-02

Joint ci ratio: 1.069074e-01	ci left: 2.074376e-02	ci right 2.310280e-02	k: 1314	n:60000
Cons ci ratio: 1.791471e-01	ci left: 7.207175e-03	ci right 8.641037e-03	k: 474	n:60000
KS ci ratio: 5.137897e-03	ci left: 9.042099e-01	ci right 9.088840e-01	k: 54394	n:60000
RNF115   60000 perm   12 sec   (4990 perm/sec)   p_kst 9.065667e-01   p_cons 7.900000e-03   p_joint 2.190000e-02

Joint ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
Cons ci ratio: 1.648368e-01	ci left: 7.353382e-03	ci right 8.687884e-03	k: 560	n:70000
KS ci ratio: 4.747768e-03	ci left: 9.047090e-01	ci right 9.090287e-01	k: 63482	n:70000
RNF115   70000 perm   14 sec   (4869 perm/sec)   p_kst 9.068857e-01   p_cons 8.000000e-03   p_joint 2.200000e-02

Joint ci ratio: 9.197865e-02	ci left: 2.117794e-02	ci right 2.323192e-02	k: 1775	n:80000
Cons ci ratio: 1.531282e-01	ci left: 7.502539e-03	ci right 8.758525e-03	k: 649	n:80000
KS ci ratio: 4.445000e-03	ci left: 9.047014e-01	ci right 9.087441e-01	k: 72539	n:80000
RNF115   80000 perm   17 sec   (4760 perm/sec)   p_kst 9.067375e-01   p_cons 8.112500e-03   p_joint 2.218750e-02

Joint ci ratio: 8.687412e-02	ci left: 2.116031e-02	ci right 2.309289e-02	k: 1990	n:90000
Cons ci ratio: 1.438018e-01	ci left: 7.599732e-03	ci right 8.787850e-03	k: 736	n:90000
KS ci ratio: 4.183985e-03	ci left: 9.050951e-01	ci right 9.089009e-01	k: 81631	n:90000
RNF115   90000 perm   19 sec   (4651 perm/sec)   p_kst 9.070111e-01   p_cons 8.177778e-03   p_joint 2.211111e-02

Joint ci ratio: 8.255398e-02	ci left: 2.113894e-02	ci right 2.296893e-02	k: 2204	n:100000
Cons ci ratio: 1.368349e-01	ci left: 7.582732e-03	ci right 8.706078e-03	k: 813	n:100000
KS ci ratio: 3.969288e-03	ci left: 9.051932e-01	ci right 9.088032e-01	k: 90701	n:100000
RNF115   100000 perm   22 sec   (4552 perm/sec)   p_kst 9.070100e-01   p_cons 8.130000e-03   p_joint 2.204000e-02

Joint ci ratio: 7.848910e-02	ci left: 2.130173e-02	ci right 2.305086e-02	k: 2438	n:110000
Cons ci ratio: 1.299123e-01	ci left: 7.675522e-03	ci right 8.750649e-03	k: 902	n:110000
KS ci ratio: 3.775188e-03	ci left: 9.056992e-01	ci right 9.091338e-01	k: 99817	n:110000
RNF115   110000 perm   25 sec   (4459 perm/sec)   p_kst 9.074273e-01   p_cons 8.200000e-03   p_joint 2.216364e-02

Joint ci ratio: 6.818016e-02	ci left: 2.589354e-02	ci right 2.772943e-02	k: 3216	n:120000
Cons ci ratio: 1.240703e-01	ci left: 7.737885e-03	ci right 8.769424e-03	k: 989	n:120000
KS ci ratio: 3.615582e-03	ci left: 9.057207e-01	ci right 9.090096e-01	k: 108885	n:120000
RNF115   120000 perm   27 sec   (4372 perm/sec)   p_kst 9.073750e-01   p_cons 8.241667e-03   p_joint 2.680000e-02

Joint ci ratio: 6.540022e-02	ci left: 2.601209e-02	ci right 2.777833e-02	k: 3495	n:130000
Cons ci ratio: 1.187848e-01	ci left: 7.813966e-03	ci right 8.808154e-03	k: 1079	n:130000
KS ci ratio: 3.477029e-03	ci left: 9.056253e-01	ci right 9.087873e-01	k: 117938	n:130000
RNF115   130000 perm   30 sec   (4289 perm/sec)   p_kst 9.072154e-01   p_cons 8.300000e-03   p_joint 2.688462e-02

Joint ci ratio: 6.390695e-02	ci left: 2.533439e-02	ci right 2.701388e-02	k: 3663	n:140000
Cons ci ratio: 1.143192e-01	ci left: 7.852214e-03	ci right 8.811174e-03	k: 1165	n:140000
KS ci ratio: 3.350849e-03	ci left: 9.056681e-01	ci right 9.087150e-01	k: 127008	n:140000
RNF115   140000 perm   33 sec   (4210 perm/sec)   p_kst 9.072000e-01   p_cons 8.321429e-03   p_joint 2.616429e-02

Joint ci ratio: 6.172962e-02	ci left: 2.537124e-02	ci right 2.699381e-02	k: 3926	n:150000
Cons ci ratio: 1.098804e-01	ci left: 7.950813e-03	ci right 8.881672e-03	k: 1261	n:150000
KS ci ratio: 3.229142e-03	ci left: 9.061434e-01	ci right 9.090808e-01	k: 136143	n:150000
RNF115   150000 perm   36 sec   (4132 perm/sec)   p_kst 9.076200e-01   p_cons 8.406667e-03   p_joint 2.617333e-02

Joint ci ratio: 5.968757e-02	ci left: 2.546592e-02	ci right 2.703881e-02	k: 4199	n:160000
Cons ci ratio: 1.060002e-01	ci left: 8.025545e-03	ci right 8.929902e-03	k: 1355	n:160000
KS ci ratio: 3.125923e-03	ci left: 9.062272e-01	ci right 9.090706e-01	k: 145225	n:160000
RNF115   160000 perm   39 sec   (4058 perm/sec)   p_kst 9.076563e-01   p_cons 8.468750e-03   p_joint 2.624375e-02

Joint ci ratio: 5.785555e-02	ci left: 2.553284e-02	ci right 2.705984e-02	k: 4469	n:170000
Cons ci ratio: 1.028623e-01	ci left: 8.034668e-03	ci right 8.911630e-03	k: 1439	n:170000
KS ci ratio: 3.033711e-03	ci left: 9.062076e-01	ci right 9.089667e-01	k: 154291	n:170000
RNF115   170000 perm   43 sec   (3985 perm/sec)   p_kst 9.075941e-01   p_cons 8.464706e-03   p_joint 2.628824e-02

Joint ci ratio: 5.616423e-02	ci left: 2.560943e-02	ci right 2.709477e-02	k: 4742	n:180000
Cons ci ratio: 9.992148e-02	ci left: 8.053964e-03	ci right 8.906425e-03	k: 1525	n:180000
KS ci ratio: 2.950668e-03	ci left: 9.061075e-01	ci right 9.087905e-01	k: 163342	n:180000
RNF115   180000 perm   46 sec   (3916 perm/sec)   p_kst 9.074556e-01   p_cons 8.472222e-03   p_joint 2.634444e-02

Outputting figure to mutsig2_images.part000000000147/RNF115.2_951_180000_0.90746_0.0084722_0.026344.png
                gene_name: RNF115
               theta_stop: 0.100 
                    nperm: 180000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.0085 
      ci_cons_bounds_left: 0.0081 
     ci_cons_bounds_right: 0.0089 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000147
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 147 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 4422390: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000148> was used as the working directory.
Started at Wed Oct 24 18:06:22 2012
Results reported at Wed Oct 24 21:30:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000148.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000148.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 148  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000148.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13208.88 sec.
    Max Memory :      5349 MB
    Max Swap   :      7775 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
148
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 148
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 148: processing genes 13300 - 13390
Calculating significance of each gene.
Using projection method.
13300	RNF139	8.947063e-01
13301	RNF14	8.184713e-01
13302	RNF141	1
13303	RNF144A	1.389822e-01
13304	RNF144B	5.271389e-02
13305	RNF145	9.342673e-01
13306	RNF146	1
13307	RNF148	1.526794e-01
13308	RNF149	8.464944e-01
13309	RNF150	2.106149e-02
13310	RNF151	5.056659e-01
13311	RNF152	1
13312	RNF157	9.384057e-01
13313	RNF160	9.998912e-01
13314	RNF165	8.334215e-02
13315	RNF166	1
13316	RNF167	1
13317	RNF168	8.522215e-01
13318	RNF169	6.823579e-01
13319	RNF17	1
13320	RNF170	7.867742e-01
13321	RNF175	1.677746e-01
13322	RNF180	2.389863e-01
13323	RNF181	1
13324	RNF182	7.752644e-01
13325	RNF183	6.340907e-01
13326	RNF185	2.271439e-01
13327	RNF186	1
13328	RNF19A	9.498169e-01
13329	RNF19B	4.361225e-01
13330	RNF2	5.665959e-01
13331	RNF20	2.263655e-01
13332	RNF207	8.694560e-01
13333	RNF208	1
13334	RNF212	9.496600e-02
13335	RNF213	1
13336	RNF214	9.418319e-01
13337	RNF215	1
13338	RNF216	8.068327e-01
13339	RNF217	7.228298e-01
13340	RNF219	5.582586e-01
13341	RNF220	7.327029e-01
13342	RNF24	1
13343	RNF25	2.390212e-01
13344	RNF26	9.257692e-01
13345	RNF31	1
13346	RNF32	5.107217e-01
13347	RNF34	9.074928e-01
13348	RNF38	4.367150e-01
13349	RNF39	6.784334e-01
13350	RNF4	5.891547e-01
13351	RNF40	9.710295e-01
13352	RNF41	1
13353	RNF43	2.046561e-01
13354	RNF44	4.661036e-01
13355	RNF5	2.287921e-01
13356	RNF6	9.118607e-01
13357	RNF7	1.135415e-01
13358	RNF8	7.563544e-01
13359	RNFT1	1
13360	RNFT2	1
13361	RNGTT	6.363029e-01
13362	RNH1	7.424057e-01
13363	RNLS	5.329777e-01
13364	RNMT	4.275287e-01
13365	RNMTL1	9.285586e-01
13366	RNPC3	1
13367	RNPEP	9.207492e-01
13368	RNPEPL1	9.435049e-01
13369	RNPS1	1
13370	ROBLD3	2.463752e-01
13371	ROBO1	9.949282e-01
13372	ROBO2	1
13373	ROBO3	2.058020e-01
13374	ROBO4	4.311904e-01
13375	ROCK1	5.217124e-01
13376	ROCK2	9.975235e-01
13377	ROD1	8.003756e-01
13378	ROGDI	6.070653e-01
13379	ROM1	1
13380	ROMO1	1
13381	ROPN1	2.171007e-01
13382	ROPN1B	3.768414e-01
13383	ROPN1L	3.135557e-01
13384	ROR1	7.242681e-01
13385	ROR2	9.926852e-01
13386	RORA	8.322831e-01
13387	RORB	2.890964e-01
13388	RORC	9.126736e-01
13389	ROS1	1
13390	RP1	4.170623e-01
Done

Running MutSig 2:
Scatter job 148: processing genes 13300 - 13390
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ROBO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
ROBO2   10000 perm   3 sec   (3542 perm/sec)   p_kst 9.201000e-01   p_cons 3.878000e-01   p_joint 7.943000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO2.21_4243_10000_0.9201_0.3878_0.7943.png
                gene_name: ROBO2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 2 percent done.
RP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
RP1   10000 perm   3 sec   (3224 perm/sec)   p_kst 7.344000e-01   p_cons 6.030000e-02   p_joint 2.181000e-01

Joint ci ratio: 4.557722e-02	ci left: 2.638063e-01	ci right 2.761606e-01	k: 5399	n:20000
Cons ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
KS ci ratio: 1.632751e-02	ci left: 7.362793e-01	ci right 7.484502e-01	k: 14848	n:20000
RP1   20000 perm   7 sec   (2938 perm/sec)   p_kst 7.424000e-01   p_cons 5.645000e-02   p_joint 2.699500e-01

Joint ci ratio: 3.618132e-02	ci left: 2.761173e-01	ci right 2.863251e-01	k: 8436	n:30000
Cons ci ratio: 9.191050e-02	ci left: 5.453327e-02	ci right 5.981956e-02	k: 1714	n:30000
KS ci ratio: 1.340925e-02	ci left: 7.351644e-01	ci right 7.451224e-01	k: 22205	n:30000
RP1   30000 perm   11 sec   (2844 perm/sec)   p_kst 7.401667e-01   p_cons 5.713333e-02   p_joint 2.812000e-01

Outputting figure to mutsig2_images.part000000000148/RP1.19_6483_30000_0.74017_0.057133_0.2812.png
                gene_name: RP1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 3 percent done.
ROBO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
Cons ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
KS ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
ROBO1   10000 perm   3 sec   (3282 perm/sec)   p_kst 4.683000e-01   p_cons 4.140000e-01   p_joint 3.723000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO1.14_5148_10000_0.4683_0.414_0.3723.png
                gene_name: ROBO1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 5 percent done.
ROBO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
Cons ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
KS ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
ROBO4   10000 perm   2 sec   (4243 perm/sec)   p_kst 2.709000e-01   p_cons 8.707000e-01   p_joint 4.337000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO4.14_3096_10000_0.2709_0.8707_0.4337.png
                gene_name: ROBO4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 6 percent done.
RNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
KS ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
RNF17   10000 perm   3 sec   (3834 perm/sec)   p_kst 1.315000e-01   p_cons 4.293000e-01   p_joint 2.213000e-01

Joint ci ratio: 6.110552e-02	ci left: 1.654100e-01	ci right 1.758860e-01	k: 3412	n:20000
Cons ci ratio: 3.222175e-02	ci left: 4.183846e-01	ci right 4.321371e-01	k: 8505	n:20000
KS ci ratio: 7.121812e-02	ci left: 1.268452e-01	ci right 1.362622e-01	k: 2630	n:20000
RNF17   20000 perm   6 sec   (3521 perm/sec)   p_kst 1.315000e-01   p_cons 4.252500e-01   p_joint 1.706000e-01

Outputting figure to mutsig2_images.part000000000148/RNF17.13_5012_20000_0.1315_0.42525_0.1706.png
                gene_name: RNF17
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
RNF213
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
RNF213   10000 perm   5 sec   (2147 perm/sec)   p_kst 9.930000e-02   p_cons 5.240000e-02   p_joint 1.756000e-01

Joint ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
Cons ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
KS ci ratio: 8.331624e-02	ci left: 9.548311e-02	ci right 1.038337e-01	k: 1992	n:20000
RNF213   20000 perm   10 sec   (2006 perm/sec)   p_kst 9.960000e-02   p_cons 5.455000e-02   p_joint 6.665000e-02

Joint ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
Cons ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
KS ci ratio: 6.807213e-02	ci left: 9.613503e-02	ci right 1.029427e-01	k: 2985	n:30000
RNF213   30000 perm   15 sec   (1943 perm/sec)   p_kst 9.950000e-02   p_cons 5.366667e-02   p_joint 5.503333e-02

Outputting figure to mutsig2_images.part000000000148/RNF213.12_16211_30000_0.0995_0.053667_0.055033.png
                gene_name: RNF213
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.058 

Current progress: 10 percent done.
ROBO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
Cons ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
ROBO3   10000 perm   3 sec   (3895 perm/sec)   p_kst 8.400000e-03   p_cons 4.309000e-01   p_joint 1.780000e-02

Joint ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
Cons ci ratio: 3.212637e-02	ci left: 4.198314e-01	ci right 4.335899e-01	k: 8534	n:20000
KS ci ratio: 2.976019e-01	ci left: 7.320842e-03	ci right 9.925044e-03	k: 171	n:20000
ROBO3   20000 perm   6 sec   (3569 perm/sec)   p_kst 8.550000e-03   p_cons 4.267000e-01   p_joint 2.055000e-02

Joint ci ratio: 1.360332e-01	ci left: 2.509845e-02	ci right 2.879393e-02	k: 807	n:30000
Cons ci ratio: 2.612491e-02	ci left: 4.230904e-01	ci right 4.343235e-01	k: 12861	n:30000
KS ci ratio: 2.468834e-01	ci left: 7.304536e-03	ci right 9.392360e-03	k: 249	n:30000
ROBO3   30000 perm   9 sec   (3440 perm/sec)   p_kst 8.300000e-03   p_cons 4.287000e-01   p_joint 2.690000e-02

Joint ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
Cons ci ratio: 2.292564e-02	ci left: 4.174030e-01	ci right 4.271083e-01	k: 16890	n:40000
KS ci ratio: 2.162195e-01	ci left: 7.268607e-03	ci right 9.053904e-03	k: 325	n:40000
ROBO3   40000 perm   12 sec   (3360 perm/sec)   p_kst 8.125000e-03   p_cons 4.222500e-01   p_joint 2.650000e-02

Joint ci ratio: 1.186609e-01	ci left: 2.009114e-02	ci right 2.264485e-02	k: 1067	n:50000
Cons ci ratio: 1.947536e-02	ci left: 4.432147e-01	ci right 4.519514e-01	k: 22379	n:50000
KS ci ratio: 1.957063e-01	ci left: 7.180741e-03	ci right 8.757189e-03	k: 397	n:50000
ROBO3   50000 perm   15 sec   (3284 perm/sec)   p_kst 7.940000e-03   p_cons 4.475800e-01   p_joint 2.134000e-02

Joint ci ratio: 1.118798e-01	ci left: 1.892713e-02	ci right 2.118629e-02	k: 1202	n:60000
Cons ci ratio: 1.802256e-02	ci left: 4.368719e-01	ci right 4.448338e-01	k: 26451	n:60000
KS ci ratio: 1.793375e-01	ci left: 7.191250e-03	ci right 8.623630e-03	k: 473	n:60000
ROBO3   60000 perm   19 sec   (3224 perm/sec)   p_kst 7.883333e-03   p_cons 4.408500e-01   p_joint 2.003333e-02

Joint ci ratio: 1.205293e-01	ci left: 1.398779e-02	ci right 1.579561e-02	k: 1041	n:70000
Cons ci ratio: 1.667533e-02	ci left: 4.374743e-01	ci right 4.448449e-01	k: 30881	n:70000
KS ci ratio: 1.654324e-01	ci left: 7.298584e-03	ci right 8.628403e-03	k: 556	n:70000
ROBO3   70000 perm   22 sec   (3178 perm/sec)   p_kst 7.942857e-03   p_cons 4.411571e-01   p_joint 1.487143e-02

Joint ci ratio: 9.670654e-02	ci left: 1.915088e-02	ci right 2.110914e-02	k: 1609	n:80000
Cons ci ratio: 1.557057e-02	ci left: 4.385920e-01	ci right 4.454872e-01	k: 35363	n:80000
KS ci ratio: 1.540871e-01	ci left: 7.406355e-03	ci right 8.654719e-03	k: 641	n:80000
ROBO3   80000 perm   26 sec   (3133 perm/sec)   p_kst 8.012500e-03   p_cons 4.420375e-01   p_joint 2.011250e-02

Joint ci ratio: 9.955951e-02	ci left: 1.608961e-02	ci right 1.778618e-02	k: 1523	n:90000
Cons ci ratio: 1.470208e-02	ci left: 4.380524e-01	ci right 4.445514e-01	k: 39717	n:90000
KS ci ratio: 1.480108e-01	ci left: 7.160685e-03	ci right 8.315827e-03	k: 695	n:90000
ROBO3   90000 perm   29 sec   (3085 perm/sec)   p_kst 7.722222e-03   p_cons 4.413000e-01   p_joint 1.692222e-02

Joint ci ratio: 9.104577e-02	ci left: 1.737071e-02	ci right 1.903740e-02	k: 1819	n:100000
Cons ci ratio: 1.396406e-02	ci left: 4.376396e-01	ci right 4.438038e-01	k: 44072	n:100000
KS ci ratio: 1.404459e-01	ci left: 7.186849e-03	ci right 8.281994e-03	k: 772	n:100000
ROBO3   100000 perm   33 sec   (3044 perm/sec)   p_kst 7.720000e-03   p_cons 4.407200e-01   p_joint 1.819000e-02

Joint ci ratio: 8.934210e-02	ci left: 1.643098e-02	ci right 1.797644e-02	k: 1891	n:110000
Cons ci ratio: 1.330888e-02	ci left: 4.379812e-01	ci right 4.438583e-01	k: 48501	n:110000
KS ci ratio: 1.336173e-01	ci left: 7.244642e-03	ci right 8.290653e-03	k: 853	n:110000
ROBO3   110000 perm   37 sec   (2997 perm/sec)   p_kst 7.754545e-03   p_cons 4.409182e-01   p_joint 1.719091e-02

Joint ci ratio: 8.379964e-02	ci left: 1.715733e-02	ci right 1.866610e-02	k: 2148	n:120000
Cons ci ratio: 1.272684e-02	ci left: 4.387044e-01	ci right 4.443318e-01	k: 52982	n:120000
KS ci ratio: 1.283906e-01	ci left: 7.213193e-03	ci right 8.210818e-03	k: 924	n:120000
ROBO3   120000 perm   41 sec   (2955 perm/sec)   p_kst 7.700000e-03   p_cons 4.415167e-01   p_joint 1.790000e-02

Joint ci ratio: 7.813761e-02	ci left: 1.824966e-02	ci right 1.974113e-02	k: 2468	n:130000
Cons ci ratio: 1.222474e-02	ci left: 4.389289e-01	ci right 4.443353e-01	k: 57412	n:130000
KS ci ratio: 1.237328e-01	ci left: 7.187259e-03	ci right 8.142591e-03	k: 995	n:130000
ROBO3   130000 perm   45 sec   (2919 perm/sec)   p_kst 7.653846e-03   p_cons 4.416308e-01   p_joint 1.898462e-02

Joint ci ratio: 7.741331e-02	ci left: 1.728898e-02	ci right 1.868823e-02	k: 2517	n:140000
Cons ci ratio: 1.177159e-02	ci left: 4.393819e-01	ci right 4.445919e-01	k: 61878	n:140000
KS ci ratio: 1.187650e-01	ci left: 7.262633e-03	ci right 8.186503e-03	k: 1080	n:140000
ROBO3   140000 perm   49 sec   (2883 perm/sec)   p_kst 7.714286e-03   p_cons 4.419857e-01   p_joint 1.797857e-02

Joint ci ratio: 7.601493e-02	ci left: 1.675738e-02	ci right 1.808803e-02	k: 2612	n:150000
Cons ci ratio: 1.137289e-02	ci left: 4.394513e-01	ci right 4.444843e-01	k: 66295	n:150000
KS ci ratio: 1.143018e-01	ci left: 7.335097e-03	ci right 8.230754e-03	k: 1166	n:150000
ROBO3   150000 perm   53 sec   (2848 perm/sec)   p_kst 7.773333e-03   p_cons 4.419667e-01   p_joint 1.741333e-02

Joint ci ratio: 7.487152e-02	ci left: 1.621271e-02	ci right 1.747989e-02	k: 2694	n:160000
Cons ci ratio: 1.100795e-02	ci left: 4.397019e-01	ci right 4.445751e-01	k: 70742	n:160000
KS ci ratio: 1.105739e-01	ci left: 7.362598e-03	ci right 8.230380e-03	k: 1246	n:160000
ROBO3   160000 perm   57 sec   (2815 perm/sec)   p_kst 7.787500e-03   p_cons 4.421375e-01   p_joint 1.683750e-02

Joint ci ratio: 7.881907e-02	ci left: 1.377559e-02	ci right 1.491165e-02	k: 2437	n:170000
Cons ci ratio: 1.067233e-02	ci left: 4.400959e-01	ci right 4.448237e-01	k: 75218	n:170000
KS ci ratio: 1.071071e-01	ci left: 7.398734e-03	ci right 8.241710e-03	k: 1328	n:170000
ROBO3   170000 perm   61 sec   (2783 perm/sec)   p_kst 7.811765e-03   p_cons 4.424588e-01   p_joint 1.433529e-02

Joint ci ratio: 6.961362e-02	ci left: 1.670812e-02	ci right 1.791861e-02	k: 3115	n:180000
Cons ci ratio: 1.036564e-02	ci left: 4.404480e-01	ci right 4.450428e-01	k: 79694	n:180000
KS ci ratio: 1.037989e-01	ci left: 7.452881e-03	ci right 8.274199e-03	k: 1414	n:180000
ROBO3   180000 perm   65 sec   (2748 perm/sec)   p_kst 7.855556e-03   p_cons 4.427444e-01   p_joint 1.730556e-02

Joint ci ratio: 7.017436e-02	ci left: 1.559056e-02	ci right 1.672954e-02	k: 3069	n:190000
Cons ci ratio: 1.008460e-02	ci left: 4.407331e-01	ci right 4.452055e-01	k: 84164	n:190000
KS ci ratio: 1.010172e-01	ci left: 7.465767e-03	ci right 8.265147e-03	k: 1493	n:190000
ROBO3   190000 perm   70 sec   (2715 perm/sec)   p_kst 7.857895e-03   p_cons 4.429684e-01   p_joint 1.615263e-02

Joint ci ratio: 6.584053e-02	ci left: 1.684129e-02	ci right 1.799276e-02	k: 3482	n:200000
Cons ci ratio: 9.835107e-03	ci left: 4.404965e-01	ci right 4.448552e-01	k: 88535	n:200000
KS ci ratio: 9.829047e-02	ci left: 7.502018e-03	ci right 8.282347e-03	k: 1577	n:200000
ROBO3   200000 perm   75 sec   (2684 perm/sec)   p_kst 7.885000e-03   p_cons 4.426750e-01   p_joint 1.741000e-02

Outputting figure to mutsig2_images.part000000000148/ROBO3.12_4273_200000_0.007885_0.44267_0.01741.png
                gene_name: ROBO3
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 11 percent done.
RNF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
Cons ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
RNF20   10000 perm   2 sec   (4357 perm/sec)   p_kst 2.593000e-01   p_cons 5.146000e-01   p_joint 3.379000e-01

Outputting figure to mutsig2_images.part000000000148/RNF20.11_3004_10000_0.2593_0.5146_0.3379.png
                gene_name: RNF20
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 13 percent done.
ROCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
ROCK1   10000 perm   3 sec   (3878 perm/sec)   p_kst 8.940000e-02   p_cons 1.264000e-01   p_joint 3.300000e-02

Joint ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
Cons ci ratio: 6.659724e-02	ci left: 1.427106e-01	ci right 1.525920e-01	k: 2952	n:20000
KS ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
ROCK1   20000 perm   6 sec   (3562 perm/sec)   p_kst 9.550000e-02   p_cons 1.476000e-01   p_joint 4.850000e-02

Joint ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
Cons ci ratio: 5.455384e-02	ci left: 1.428129e-01	ci right 1.508556e-01	k: 4404	n:30000
KS ci ratio: 7.000191e-02	ci left: 9.131098e-02	ci right 9.796776e-02	k: 2838	n:30000
ROCK1   30000 perm   9 sec   (3423 perm/sec)   p_kst 9.460000e-02   p_cons 1.468000e-01   p_joint 3.796667e-02

Joint ci ratio: 1.023112e-01	ci left: 3.358602e-02	ci right 3.723183e-02	k: 1415	n:40000
Cons ci ratio: 4.679467e-02	ci left: 1.457463e-01	ci right 1.527547e-01	k: 5969	n:40000
KS ci ratio: 6.071521e-02	ci left: 9.150238e-02	ci right 9.725666e-02	k: 3774	n:40000
ROCK1   40000 perm   12 sec   (3338 perm/sec)   p_kst 9.435000e-02   p_cons 1.492250e-01   p_joint 3.537500e-02

Joint ci ratio: 7.122482e-02	ci left: 5.508193e-02	ci right 5.916968e-02	k: 2855	n:50000
Cons ci ratio: 4.278703e-02	ci left: 1.406559e-01	ci right 1.468256e-01	k: 7186	n:50000
KS ci ratio: 5.429750e-02	ci left: 9.183103e-02	ci right 9.697617e-02	k: 4719	n:50000
ROCK1   50000 perm   15 sec   (3267 perm/sec)   p_kst 9.438000e-02   p_cons 1.437200e-01   p_joint 5.710000e-02

Outputting figure to mutsig2_images.part000000000148/ROCK1.10_4197_50000_0.09438_0.14372_0.0571.png
                gene_name: ROCK1
               theta_stop: 0.071 
                    nperm: 50000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 15 percent done.
ROR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
Cons ci ratio: 2.634893e-03	ci left: 9.940977e-01	ci right 9.968012e-01	k: 9956	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
ROR2   10000 perm   2 sec   (4401 perm/sec)   p_kst 7.642000e-01   p_cons 9.956000e-01   p_joint 9.525000e-01

Outputting figure to mutsig2_images.part000000000148/ROR2.10_2868_10000_0.7642_0.9956_0.9525.png
                gene_name: ROR2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 16 percent done.
ROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
Cons ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
ROS1   10000 perm   3 sec   (3368 perm/sec)   p_kst 3.249000e-01   p_cons 4.627000e-01   p_joint 4.940000e-01

Outputting figure to mutsig2_images.part000000000148/ROS1.8_7216_10000_0.3249_0.4627_0.494.png
                gene_name: ROS1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 18 percent done.
RNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
Cons ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
KS ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
RNF160   10000 perm   3 sec   (3664 perm/sec)   p_kst 9.550000e-02   p_cons 7.000000e-03   p_joint 1.920000e-02

Joint ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
Cons ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
KS ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
RNF160   20000 perm   6 sec   (3373 perm/sec)   p_kst 9.195000e-02   p_cons 7.350000e-03   p_joint 7.400000e-03

Joint ci ratio: 1.809622e-01	ci left: 1.400516e-02	ci right 1.682316e-02	k: 461	n:30000
Cons ci ratio: 2.547049e-01	ci left: 6.835746e-03	ci right 8.861311e-03	k: 234	n:30000
KS ci ratio: 7.053832e-02	ci left: 9.003158e-02	ci right 9.664741e-02	k: 2799	n:30000
RNF160   30000 perm   9 sec   (3265 perm/sec)   p_kst 9.330000e-02   p_cons 7.800000e-03   p_joint 1.536667e-02

Joint ci ratio: 1.787886e-01	ci left: 1.081261e-02	ci right 1.295913e-02	k: 474	n:40000
Cons ci ratio: 2.207002e-01	ci left: 6.961267e-03	ci right 8.711318e-03	k: 312	n:40000
KS ci ratio: 5.978413e-02	ci left: 9.414116e-02	ci right 9.996749e-02	k: 3881	n:40000
RNF160   40000 perm   13 sec   (3191 perm/sec)   p_kst 9.702500e-02   p_cons 7.800000e-03   p_joint 1.185000e-02

Joint ci ratio: 1.341106e-01	ci left: 1.567226e-02	ci right 1.794434e-02	k: 839	n:50000
Cons ci ratio: 1.959546e-01	ci left: 7.161715e-03	ci right 8.736219e-03	k: 396	n:50000
KS ci ratio: 5.334794e-02	ci left: 9.485404e-02	ci right 1.000728e-01	k: 4872	n:50000
RNF160   50000 perm   16 sec   (3122 perm/sec)   p_kst 9.744000e-02   p_cons 7.920000e-03   p_joint 1.678000e-02

Joint ci ratio: 1.421436e-01	ci left: 1.162632e-02	ci right 1.342130e-02	k: 750	n:60000
Cons ci ratio: 1.810784e-01	ci left: 7.047970e-03	ci right 8.466932e-03	k: 464	n:60000
KS ci ratio: 4.899561e-02	ci left: 9.403318e-02	ci right 9.877261e-02	k: 5783	n:60000
RNF160   60000 perm   20 sec   (3068 perm/sec)   p_kst 9.638333e-02   p_cons 7.733333e-03   p_joint 1.250000e-02

Joint ci ratio: 1.448282e-01	ci left: 9.606582e-03	ci right 1.112013e-02	k: 724	n:70000
Cons ci ratio: 1.678803e-01	ci left: 7.079479e-03	ci right 8.390392e-03	k: 540	n:70000
KS ci ratio: 4.535001e-02	ci left: 9.425152e-02	ci right 9.863914e-02	k: 6750	n:70000
RNF160   70000 perm   23 sec   (3024 perm/sec)   p_kst 9.642857e-02   p_cons 7.714286e-03   p_joint 1.034286e-02

Joint ci ratio: 1.190331e-01	ci left: 1.257828e-02	ci right 1.418230e-02	k: 1069	n:80000
Cons ci ratio: 1.566915e-01	ci left: 7.153989e-03	ci right 8.382112e-03	k: 620	n:80000
KS ci ratio: 4.232228e-02	ci left: 9.479658e-02	ci right 9.890771e-02	k: 7747	n:80000
RNF160   80000 perm   27 sec   (2977 perm/sec)   p_kst 9.683750e-02   p_cons 7.750000e-03   p_joint 1.336250e-02

Joint ci ratio: 1.176841e-01	ci left: 1.146063e-02	ci right 1.290440e-02	k: 1095	n:90000
Cons ci ratio: 1.487666e-01	ci left: 7.085775e-03	ci right 8.235188e-03	k: 688	n:90000
KS ci ratio: 3.981719e-02	ci left: 9.528313e-02	ci right 9.916510e-02	k: 8749	n:90000
RNF160   90000 perm   31 sec   (2932 perm/sec)   p_kst 9.721111e-02   p_cons 7.644444e-03   p_joint 1.216667e-02

Joint ci ratio: 1.160556e-01	ci left: 1.062495e-02	ci right 1.194363e-02	k: 1127	n:100000
Cons ci ratio: 1.399904e-01	ci left: 7.235107e-03	ci right 8.333731e-03	k: 777	n:100000
KS ci ratio: 3.778731e-02	ci left: 9.532111e-02	ci right 9.900230e-02	k: 9715	n:100000
RNF160   100000 perm   35 sec   (2892 perm/sec)   p_kst 9.715000e-02   p_cons 7.770000e-03   p_joint 1.127000e-02

Joint ci ratio: 1.256997e-01	ci left: 8.212480e-03	ci right 9.322744e-03	k: 963	n:110000
Cons ci ratio: 1.333814e-01	ci left: 7.271010e-03	ci right 8.318828e-03	k: 856	n:110000
KS ci ratio: 3.606731e-02	ci left: 9.522106e-02	ci right 9.872750e-02	k: 10666	n:110000
RNF160   110000 perm   39 sec   (2855 perm/sec)   p_kst 9.696364e-02   p_cons 7.781818e-03   p_joint 8.754545e-03

Joint ci ratio: 9.383938e-02	ci left: 1.366028e-02	ci right 1.501334e-02	k: 1719	n:120000
Cons ci ratio: 1.270818e-01	ci left: 7.366503e-03	ci right 8.374165e-03	k: 943	n:120000
KS ci ratio: 3.456099e-02	ci left: 9.514916e-02	ci right 9.850368e-02	k: 11618	n:120000
RNF160   120000 perm   43 sec   (2822 perm/sec)   p_kst 9.681667e-02   p_cons 7.858333e-03   p_joint 1.432500e-02

Joint ci ratio: 9.342510e-02	ci left: 1.273691e-02	ci right 1.399263e-02	k: 1736	n:130000
Cons ci ratio: 1.224386e-01	ci left: 7.343860e-03	ci right 8.309058e-03	k: 1016	n:130000
KS ci ratio: 3.319674e-02	ci left: 9.525891e-02	ci right 9.848218e-02	k: 12592	n:130000
RNF160   130000 perm   47 sec   (2788 perm/sec)   p_kst 9.686154e-02   p_cons 7.815385e-03   p_joint 1.335385e-02

Joint ci ratio: 8.365216e-02	ci left: 1.479644e-02	ci right 1.609517e-02	k: 2161	n:140000
Cons ci ratio: 1.173510e-01	ci left: 7.442902e-03	ci right 8.377652e-03	k: 1106	n:140000
KS ci ratio: 3.194967e-02	ci left: 9.553250e-02	ci right 9.864135e-02	k: 13591	n:140000
RNF160   140000 perm   51 sec   (2752 perm/sec)   p_kst 9.707857e-02   p_cons 7.900000e-03   p_joint 1.543571e-02

Joint ci ratio: 8.726648e-02	ci left: 1.269375e-02	ci right 1.385851e-02	k: 1990	n:150000
Cons ci ratio: 1.131352e-01	ci left: 7.490579e-03	ci right 8.395263e-03	k: 1190	n:150000
KS ci ratio: 3.092853e-02	ci left: 9.523530e-02	ci right 9.823364e-02	k: 14509	n:150000
RNF160   150000 perm   55 sec   (2722 perm/sec)   p_kst 9.672667e-02   p_cons 7.933333e-03   p_joint 1.326667e-02

Joint ci ratio: 9.753926e-02	ci left: 9.506037e-03	ci right 1.048684e-02	k: 1598	n:160000
Cons ci ratio: 1.141330e-01	ci left: 6.900850e-03	ci right 7.742151e-03	k: 1170	n:160000
KS ci ratio: 2.993928e-02	ci left: 9.532432e-02	ci right 9.822781e-02	k: 15483	n:160000
RNF160   160000 perm   59 sec   (2692 perm/sec)   p_kst 9.676875e-02   p_cons 7.312500e-03   p_joint 9.987500e-03

Joint ci ratio: 9.692774e-02	ci left: 9.067284e-03	ci right 9.996617e-03	k: 1619	n:170000
Cons ci ratio: 1.110489e-01	ci left: 6.872214e-03	ci right 7.685901e-03	k: 1236	n:170000
KS ci ratio: 2.903536e-02	ci left: 9.542759e-02	ci right 9.824500e-02	k: 16461	n:170000
RNF160   170000 perm   64 sec   (2663 perm/sec)   p_kst 9.682941e-02   p_cons 7.270588e-03   p_joint 9.523529e-03

Joint ci ratio: 9.805911e-02	ci left: 8.368274e-03	ci right 9.236546e-03	k: 1583	n:180000
Cons ci ratio: 1.084537e-01	ci left: 6.814596e-03	ci right 7.601400e-03	k: 1296	n:180000
KS ci ratio: 2.818719e-02	ci left: 9.565305e-02	ci right 9.839328e-02	k: 17463	n:180000
RNF160   180000 perm   68 sec   (2634 perm/sec)   p_kst 9.701667e-02   p_cons 7.200000e-03   p_joint 8.794444e-03

Joint ci ratio: 7.899438e-02	ci left: 1.228904e-02	ci right 1.330485e-02	k: 2430	n:190000
Cons ci ratio: 1.054083e-01	ci left: 6.845242e-03	ci right 7.612014e-03	k: 1372	n:190000
KS ci ratio: 2.746447e-02	ci left: 9.550537e-02	ci right 9.817010e-02	k: 18398	n:190000
RNF160   190000 perm   73 sec   (2605 perm/sec)   p_kst 9.683158e-02   p_cons 7.221053e-03   p_joint 1.278947e-02

Joint ci ratio: 6.941514e-02	ci left: 1.514989e-02	ci right 1.624422e-02	k: 3138	n:200000
Cons ci ratio: 1.025345e-01	ci left: 6.882845e-03	ci right 7.631543e-03	k: 1450	n:200000
KS ci ratio: 2.676322e-02	ci left: 9.557706e-02	ci right 9.817464e-02	k: 19374	n:200000
RNF160   200000 perm   78 sec   (2577 perm/sec)   p_kst 9.687000e-02   p_cons 7.250000e-03   p_joint 1.569000e-02

Joint ci ratio: 6.922911e-02	ci left: 1.451721e-02	ci right 1.556291e-02	k: 3157	n:210000
Cons ci ratio: 1.000155e-01	ci left: 6.898549e-03	ci right 7.629437e-03	k: 1524	n:210000
KS ci ratio: 2.609108e-02	ci left: 9.578945e-02	ci right 9.832644e-02	k: 20381	n:210000
RNF160   210000 perm   82 sec   (2551 perm/sec)   p_kst 9.705238e-02   p_cons 7.257143e-03   p_joint 1.503333e-02

Joint ci ratio: 6.848707e-02	ci left: 1.416995e-02	ci right 1.517926e-02	k: 3227	n:220000
Cons ci ratio: 9.773511e-02	ci left: 6.904159e-03	ci right 7.618007e-03	k: 1596	n:220000
KS ci ratio: 2.547441e-02	ci left: 9.593356e-02	ci right 9.841343e-02	k: 21377	n:220000
RNF160   220000 perm   87 sec   (2525 perm/sec)   p_kst 9.716818e-02   p_cons 7.254545e-03   p_joint 1.466818e-02

Outputting figure to mutsig2_images.part000000000148/RNF160.7_5559_220000_0.097168_0.0072545_0.014668.png
                gene_name: RNF160
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.0073 
      ci_cons_bounds_left: 0.0069 
     ci_cons_bounds_right: 0.0076 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 19 percent done.
RNF31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
Cons ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
KS ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
RNF31   10000 perm   2 sec   (5137 perm/sec)   p_kst 5.858000e-01   p_cons 6.471000e-01   p_joint 8.235000e-01

Outputting figure to mutsig2_images.part000000000148/RNF31.7_3303_10000_0.5858_0.6471_0.8235.png
                gene_name: RNF31
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 21 percent done.
RORB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
Cons ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
KS ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
RORB   10000 perm   2 sec   (5477 perm/sec)   p_kst 7.948000e-01   p_cons 9.920000e-02   p_joint 3.778000e-01

Joint ci ratio: 3.728935e-02	ci left: 3.492111e-01	ci right 3.625309e-01	k: 7117	n:20000
Cons ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
KS ci ratio: 1.420947e-02	ci left: 7.862067e-01	ci right 7.975083e-01	k: 15838	n:20000
RORB   20000 perm   4 sec   (4845 perm/sec)   p_kst 7.919000e-01   p_cons 9.745000e-02   p_joint 3.558500e-01

Outputting figure to mutsig2_images.part000000000148/RORB.7_1420_20000_0.7919_0.09745_0.35585.png
                gene_name: RORB
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 23 percent done.
RNF150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
RNF150   10000 perm   2 sec   (5441 perm/sec)   p_kst 7.875000e-01   p_cons 1.581000e-01   p_joint 3.776000e-01

Outputting figure to mutsig2_images.part000000000148/RNF150.6_1345_10000_0.7875_0.1581_0.3776.png
                gene_name: RNF150
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 24 percent done.
RNF216
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
Cons ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
RNF216   10000 perm   2 sec   (5018 perm/sec)   p_kst 4.998000e-01   p_cons 5.037000e-01   p_joint 5.521000e-01

Outputting figure to mutsig2_images.part000000000148/RNF216.5_2836_10000_0.4998_0.5037_0.5521.png
                gene_name: RNF216
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 26 percent done.
RNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
Cons ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
KS ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
RNF43   10000 perm   2 sec   (4819 perm/sec)   p_kst 7.770000e-01   p_cons 4.293000e-01   p_joint 7.687000e-01

Outputting figure to mutsig2_images.part000000000148/RNF43.6_2388_10000_0.777_0.4293_0.7687.png
                gene_name: RNF43
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
RNF165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
Cons ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
RNF165   10000 perm   2 sec   (6208 perm/sec)   p_kst 4.370000e-02   p_cons 5.143000e-01   p_joint 7.280000e-02

Joint ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
Cons ci ratio: 2.697267e-02	ci left: 5.066465e-01	ci right 5.205496e-01	k: 10272	n:20000
KS ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
RNF165   20000 perm   4 sec   (5399 perm/sec)   p_kst 4.115000e-02   p_cons 5.136000e-01   p_joint 7.400000e-02

Joint ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
Cons ci ratio: 2.221986e-02	ci left: 5.034924e-01	ci right 5.148392e-01	k: 15275	n:30000
KS ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
RNF165   30000 perm   6 sec   (5190 perm/sec)   p_kst 4.140000e-02   p_cons 5.091667e-01   p_joint 5.970000e-02

Joint ci ratio: 7.189702e-02	ci left: 6.668254e-02	ci right 7.168022e-02	k: 2766	n:40000
Cons ci ratio: 1.926021e-02	ci left: 5.038129e-01	ci right 5.136359e-01	k: 20349	n:40000
KS ci ratio: 9.431259e-02	ci left: 3.944416e-02	ci right 4.337277e-02	k: 1655	n:40000
RNF165   40000 perm   8 sec   (5035 perm/sec)   p_kst 4.137500e-02   p_cons 5.087250e-01   p_joint 6.915000e-02

Outputting figure to mutsig2_images.part000000000148/RNF165.5_1073_40000_0.041375_0.50872_0.06915.png
                gene_name: RNF165
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 29 percent done.
RNF168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
Cons ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
RNF168   10000 perm   2 sec   (5333 perm/sec)   p_kst 9.538000e-01   p_cons 2.584000e-01   p_joint 7.104000e-01

Outputting figure to mutsig2_images.part000000000148/RNF168.5_1740_10000_0.9538_0.2584_0.7104.png
                gene_name: RNF168
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 31 percent done.
RNF19A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
Cons ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
KS ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
RNF19A   10000 perm   2 sec   (4737 perm/sec)   p_kst 8.107000e-01   p_cons 3.500000e-01   p_joint 6.632000e-01

Outputting figure to mutsig2_images.part000000000148/RNF19A.5_2553_10000_0.8107_0.35_0.6632.png
                gene_name: RNF19A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 32 percent done.
RNF19B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
Cons ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
KS ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
RNF19B   10000 perm   2 sec   (5203 perm/sec)   p_kst 3.328000e-01   p_cons 4.917000e-01   p_joint 4.604000e-01

Outputting figure to mutsig2_images.part000000000148/RNF19B.5_2261_10000_0.3328_0.4917_0.4604.png
                gene_name: RNF19B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 34 percent done.
RNF219
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
Cons ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
RNF219   10000 perm   2 sec   (5391 perm/sec)   p_kst 1.107000e-01   p_cons 2.476000e-01   p_joint 1.123000e-01

Joint ci ratio: 6.568640e-02	ci left: 1.461624e-01	ci right 1.561392e-01	k: 3022	n:20000
Cons ci ratio: 4.803522e-02	ci left: 2.437626e-01	ci right 2.558102e-01	k: 4995	n:20000
KS ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
RNF219   20000 perm   4 sec   (4821 perm/sec)   p_kst 1.063000e-01   p_cons 2.497500e-01   p_joint 1.511000e-01

Outputting figure to mutsig2_images.part000000000148/RNF219.5_2205_20000_0.1063_0.24975_0.1511.png
                gene_name: RNF219
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
RORA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
RORA   10000 perm   2 sec   (5098 perm/sec)   p_kst 3.217000e-01   p_cons 1.471000e-01   p_joint 3.606000e-01

Outputting figure to mutsig2_images.part000000000148/RORA.5_2096_10000_0.3217_0.1471_0.3606.png
                gene_name: RORA
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 37 percent done.
RNF144A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
RNF144A   10000 perm   2 sec   (6507 perm/sec)   p_kst 7.913000e-01   p_cons 4.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF144A.4_907_10000_0.7913_0.4826_1.png
                gene_name: RNF144A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
RNF144B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
Cons ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
KS ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
RNF144B   10000 perm   2 sec   (5920 perm/sec)   p_kst 2.833000e-01   p_cons 3.552000e-01   p_joint 4.578000e-01

Outputting figure to mutsig2_images.part000000000148/RNF144B.4_940_10000_0.2833_0.3552_0.4578.png
                gene_name: RNF144B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 40 percent done.
RNF157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
RNF157   10000 perm   2 sec   (5476 perm/sec)   p_kst 8.290000e-02   p_cons 2.152000e-01   p_joint 1.655000e-01

Joint ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
Cons ci ratio: 5.169502e-02	ci left: 2.174943e-01	ci right 2.290863e-01	k: 4465	n:20000
KS ci ratio: 9.277284e-02	ci left: 7.813566e-02	ci right 8.578640e-02	k: 1638	n:20000
RNF157   20000 perm   4 sec   (4910 perm/sec)   p_kst 8.190000e-02   p_cons 2.232500e-01   p_joint 9.695000e-02

Outputting figure to mutsig2_images.part000000000148/RNF157.4_2116_20000_0.0819_0.22325_0.09695.png
                gene_name: RNF157
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 42 percent done.
RNF180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
RNF180   10000 perm   2 sec   (5558 perm/sec)   p_kst 4.540000e-02   p_cons 7.937000e-01   p_joint 1.446000e-01

Joint ci ratio: 8.315414e-02	ci left: 9.582658e-02	ci right 1.041901e-01	k: 1999	n:20000
Cons ci ratio: 1.404983e-02	ci left: 7.899434e-01	ci right 8.011706e-01	k: 15912	n:20000
KS ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
RNF180   20000 perm   4 sec   (4921 perm/sec)   p_kst 4.340000e-02   p_cons 7.956000e-01   p_joint 9.995000e-02

Joint ci ratio: 6.497407e-02	ci left: 1.046735e-01	ci right 1.117360e-01	k: 3245	n:30000
Cons ci ratio: 1.154794e-02	ci left: 7.888072e-01	ci right 7.980026e-01	k: 23803	n:30000
KS ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
RNF180   30000 perm   6 sec   (4701 perm/sec)   p_kst 4.333333e-02   p_cons 7.934333e-01   p_joint 1.081667e-01

Joint ci ratio: 5.624751e-02	ci left: 1.052212e-01	ci right 1.113357e-01	k: 4330	n:40000
Cons ci ratio: 1.002010e-02	ci left: 7.887944e-01	ci right 7.967630e-01	k: 31712	n:40000
KS ci ratio: 9.201772e-02	ci left: 4.139949e-02	ci right 4.541714e-02	k: 1735	n:40000
RNF180   40000 perm   9 sec   (4560 perm/sec)   p_kst 4.337500e-02   p_cons 7.928000e-01   p_joint 1.082500e-01

Outputting figure to mutsig2_images.part000000000148/RNF180.4_1831_40000_0.043375_0.7928_0.10825.png
                gene_name: RNF180
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 44 percent done.
RNF212
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
Cons ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
RNF212   10000 perm   2 sec   (6492 perm/sec)   p_kst 7.860000e-02   p_cons 5.634000e-01   p_joint 1.619000e-01

Joint ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
Cons ci ratio: 2.450113e-02	ci left: 5.544393e-01	ci right 5.682428e-01	k: 11227	n:20000
KS ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
RNF212   20000 perm   4 sec   (5710 perm/sec)   p_kst 7.835000e-02   p_cons 5.613500e-01   p_joint 1.379500e-01

Outputting figure to mutsig2_images.part000000000148/RNF212.4_934_20000_0.07835_0.56135_0.13795.png
                gene_name: RNF212
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
RNF214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
Cons ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
KS ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
RNF214   10000 perm   2 sec   (5655 perm/sec)   p_kst 4.186000e-01   p_cons 7.044000e-01   p_joint 5.878000e-01

Outputting figure to mutsig2_images.part000000000148/RNF214.4_2168_10000_0.4186_0.7044_0.5878.png
                gene_name: RNF214
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 47 percent done.
RNF220
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
Cons ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
KS ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
RNF220   10000 perm   2 sec   (5727 perm/sec)   p_kst 1.347000e-01   p_cons 8.020000e-02   p_joint 9.460000e-02

Joint ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
Cons ci ratio: 9.114699e-02	ci left: 8.077881e-02	ci right 8.854244e-02	k: 1692	n:20000
KS ci ratio: 6.928976e-02	ci left: 1.331494e-01	ci right 1.427562e-01	k: 2758	n:20000
RNF220   20000 perm   4 sec   (5067 perm/sec)   p_kst 1.379000e-01   p_cons 8.460000e-02   p_joint 1.234000e-01

Outputting figure to mutsig2_images.part000000000148/RNF220.4_1757_20000_0.1379_0.0846_0.1234.png
                gene_name: RNF220
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 48 percent done.
RNF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
Cons ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
KS ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
RNF25   10000 perm   2 sec   (5780 perm/sec)   p_kst 7.499000e-01   p_cons 1.889000e-01   p_joint 6.862000e-01

Outputting figure to mutsig2_images.part000000000148/RNF25.4_1420_10000_0.7499_0.1889_0.6862.png
                gene_name: RNF25
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 50 percent done.
RNF34
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.571600e-02	ci left: 6.900036e-01	ci right 7.080803e-01	k: 6991	n:10000
Cons ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
KS ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
RNF34   10000 perm   2 sec   (6582 perm/sec)   p_kst 3.746000e-01   p_cons 4.468000e-01   p_joint 6.991000e-01

Outputting figure to mutsig2_images.part000000000148/RNF34.2_1156_10000_0.3746_0.4468_0.6991.png
                gene_name: RNF34
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 52 percent done.
RNF40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
Cons ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
RNF40   10000 perm   2 sec   (5183 perm/sec)   p_kst 5.378000e-01   p_cons 6.252000e-01   p_joint 5.805000e-01

Outputting figure to mutsig2_images.part000000000148/RNF40.4_3082_10000_0.5378_0.6252_0.5805.png
                gene_name: RNF40
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 53 percent done.
RNGTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
Cons ci ratio: 1.386890e-02	ci left: 8.824747e-01	ci right 8.948979e-01	k: 8888	n:10000
KS ci ratio: 3.662153e-02	ci left: 5.240640e-01	ci right 5.437162e-01	k: 5339	n:10000
RNGTT   10000 perm   2 sec   (5542 perm/sec)   p_kst 5.339000e-01   p_cons 8.888000e-01   p_joint 5.928000e-01

Outputting figure to mutsig2_images.part000000000148/RNGTT.4_1858_10000_0.5339_0.8888_0.5928.png
                gene_name: RNGTT
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 55 percent done.
ROCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
Cons ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
KS ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
ROCK2   10000 perm   2 sec   (4452 perm/sec)   p_kst 1.002000e-01   p_cons 9.123000e-01   p_joint 1.955000e-01

Joint ci ratio: 5.882255e-02	ci left: 1.763281e-01	ci right 1.870646e-01	k: 3633	n:20000
Cons ci ratio: 8.686662e-03	ci left: 9.065608e-01	ci right 9.145194e-01	k: 18212	n:20000
KS ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
ROCK2   20000 perm   5 sec   (4024 perm/sec)   p_kst 9.745000e-02   p_cons 9.106000e-01   p_joint 1.816500e-01

Outputting figure to mutsig2_images.part000000000148/ROCK2.4_4299_20000_0.09745_0.9106_0.18165.png
                gene_name: ROCK2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 56 percent done.
ROR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
Cons ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
KS ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
ROR1   10000 perm   2 sec   (4981 perm/sec)   p_kst 1.574000e-01   p_cons 2.903000e-01   p_joint 1.780000e-01

Outputting figure to mutsig2_images.part000000000148/ROR1.4_2858_10000_0.1574_0.2903_0.178.png
                gene_name: ROR1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
RNF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
KS ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
RNF14   10000 perm   2 sec   (5941 perm/sec)   p_kst 8.203000e-01   p_cons 3.774000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000148/RNF14.3_1453_10000_0.8203_0.3774_0.9841.png
                gene_name: RNF14
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 60 percent done.
RNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
RNF148   10000 perm   2 sec   (6292 perm/sec)   p_kst 4.476000e-01   p_cons 5.055000e-01   p_joint 7.658000e-01

Outputting figure to mutsig2_images.part000000000148/RNF148.3_922_10000_0.4476_0.5055_0.7658.png
                gene_name: RNF148
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 61 percent done.
RNF175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
Cons ci ratio: 4.526275e-02	ci left: 4.187729e-01	ci right 4.382688e-01	k: 4285	n:10000
KS ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
RNF175   10000 perm   1 sec   (7106 perm/sec)   p_kst 6.198000e-01   p_cons 4.285000e-01   p_joint 5.724000e-01

Outputting figure to mutsig2_images.part000000000148/RNF175.3_1023_10000_0.6198_0.4285_0.5724.png
                gene_name: RNF175
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
RNF38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
Cons ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
RNF38   10000 perm   2 sec   (6169 perm/sec)   p_kst 7.940000e-02   p_cons 5.633000e-01   p_joint 1.051000e-01

Joint ci ratio: 8.666425e-02	ci left: 8.876415e-02	ci right 9.685468e-02	k: 1855	n:20000
Cons ci ratio: 2.436461e-02	ci left: 5.571938e-01	ci right 5.709876e-01	k: 11282	n:20000
KS ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
RNF38   20000 perm   4 sec   (5433 perm/sec)   p_kst 7.460000e-02   p_cons 5.641000e-01   p_joint 9.275000e-02

Outputting figure to mutsig2_images.part000000000148/RNF38.3_1596_20000_0.0746_0.5641_0.09275.png
                gene_name: RNF38
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 65 percent done.
RNMT
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
Cons ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
RNMT   10000 perm   1 sec   (6840 perm/sec)   p_kst 2.370000e-01   p_cons 4.279000e-01   p_joint 9.023000e-01

Outputting figure to mutsig2_images.part000000000148/RNMT.2_1471_10000_0.237_0.4279_0.9023.png
                gene_name: RNMT
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 66 percent done.
RNPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
Cons ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
KS ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
RNPEP   10000 perm   2 sec   (5714 perm/sec)   p_kst 4.903000e-01   p_cons 9.215000e-01   p_joint 7.861000e-01

Outputting figure to mutsig2_images.part000000000148/RNPEP.3_1997_10000_0.4903_0.9215_0.7861.png
                gene_name: RNPEP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 68 percent done.
ROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.439863e-02	ci left: 5.551154e-01	ci right 5.746468e-01	k: 5649	n:10000
Cons ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KS ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
ROD1   10000 perm   2 sec   (6028 perm/sec)   p_kst 3.543000e-01   p_cons 6.101000e-01   p_joint 5.649000e-01

Outputting figure to mutsig2_images.part000000000148/ROD1.3_1728_10000_0.3543_0.6101_0.5649.png
                gene_name: ROD1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 69 percent done.
ROPN1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
KS ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
ROPN1   10000 perm   1 sec   (7087 perm/sec)   p_kst 8.680000e-02   p_cons 1.020000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
KS ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
ROPN1   20000 perm   3 sec   (6152 perm/sec)   p_kst 8.610000e-02   p_cons 9.100000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.310914e-01	ci left: 8.401935e-03	ci right 1.062794e-02	k: 284	n:30000
KS ci ratio: 7.300946e-02	ci left: 8.445702e-02	ci right 9.088975e-02	k: 2629	n:30000
ROPN1   30000 perm   5 sec   (5800 perm/sec)   p_kst 8.763333e-02   p_cons 9.466667e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.009341e-01	ci left: 8.477597e-03	ci right 1.039463e-02	k: 376	n:40000
KS ci ratio: 6.329423e-02	ci left: 8.472377e-02	ci right 9.028628e-02	k: 3499	n:40000
ROPN1   40000 perm   7 sec   (5562 perm/sec)   p_kst 8.747500e-02   p_cons 9.400000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.803503e-01	ci left: 8.515444e-03	ci right 1.022225e-02	k: 467	n:50000
KS ci ratio: 5.625361e-02	ci left: 8.602443e-02	ci right 9.102346e-02	k: 4425	n:50000
ROPN1   50000 perm   9 sec   (5387 perm/sec)   p_kst 8.850000e-02   p_cons 9.340000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.662277e-01	ci left: 8.419580e-03	ci right 9.961789e-03	k: 550	n:60000
KS ci ratio: 5.142250e-02	ci left: 8.602487e-02	ci right 9.058171e-02	k: 5297	n:60000
ROPN1   60000 perm   11 sec   (5239 perm/sec)   p_kst 8.828333e-02   p_cons 9.166667e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.542405e-01	ci left: 8.437289e-03	ci right 9.860989e-03	k: 639	n:70000
KS ci ratio: 4.754057e-02	ci left: 8.642006e-02	ci right 9.064269e-02	k: 6196	n:70000
ROPN1   70000 perm   14 sec   (5089 perm/sec)   p_kst 8.851429e-02   p_cons 9.128571e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 1.434332e-01	ci left: 8.586169e-03	ci right 9.924783e-03	k: 739	n:80000
KS ci ratio: 4.468608e-02	ci left: 8.578577e-02	ci right 8.971918e-02	k: 7019	n:80000
ROPN1   80000 perm   16 sec   (4947 perm/sec)   p_kst 8.773750e-02   p_cons 9.237500e-03   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 1.351074e-01	ci left: 8.640239e-03	ci right 9.902805e-03	k: 833	n:90000
KS ci ratio: 4.226996e-02	ci left: 8.537557e-02	ci right 8.907331e-02	k: 7849	n:90000
ROPN1   90000 perm   19 sec   (4836 perm/sec)   p_kst 8.721111e-02   p_cons 9.255556e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 1.282207e-01	ci left: 8.665931e-03	ci right 9.862792e-03	k: 925	n:100000
KS ci ratio: 4.011902e-02	ci left: 8.539892e-02	ci right 8.890507e-02	k: 8714	n:100000
ROPN1   100000 perm   21 sec   (4731 perm/sec)   p_kst 8.714000e-02   p_cons 9.250000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.221690e-01	ci left: 8.705922e-03	ci right 9.847449e-03	k: 1019	n:110000
KS ci ratio: 3.816158e-02	ci left: 8.585454e-02	ci right 8.920361e-02	k: 9627	n:110000
ROPN1   110000 perm   24 sec   (4636 perm/sec)   p_kst 8.751818e-02   p_cons 9.263636e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.159586e-01	ci left: 8.886023e-03	ci right 9.987879e-03	k: 1131	n:120000
KS ci ratio: 3.655845e-02	ci left: 8.583270e-02	ci right 8.903727e-02	k: 10491	n:120000
ROPN1   120000 perm   26 sec   (4539 perm/sec)   p_kst 8.742500e-02   p_cons 9.425000e-03   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.112874e-01	ci left: 8.927445e-03	ci right 9.986917e-03	k: 1228	n:130000
KS ci ratio: 3.513157e-02	ci left: 8.586251e-02	ci right 8.894054e-02	k: 11361	n:130000
ROPN1   130000 perm   29 sec   (4449 perm/sec)   p_kst 8.739231e-02   p_cons 9.446154e-03   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.074253e-01	ci left: 8.915043e-03	ci right 9.934002e-03	k: 1318	n:140000
KS ci ratio: 3.381882e-02	ci left: 8.608154e-02	ci right 8.904985e-02	k: 12258	n:140000
ROPN1   140000 perm   32 sec   (4367 perm/sec)   p_kst 8.755714e-02   p_cons 9.414286e-03   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.038278e-01	ci left: 8.924330e-03	ci right 9.908106e-03	k: 1411	n:150000
KS ci ratio: 3.262670e-02	ci left: 8.635262e-02	ci right 8.922334e-02	k: 13167	n:150000
ROPN1   150000 perm   35 sec   (4290 perm/sec)   p_kst 8.778000e-02   p_cons 9.406667e-03   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.007042e-01	ci left: 8.908579e-03	ci right 9.859326e-03	k: 1500	n:160000
KS ci ratio: 3.158558e-02	ci left: 8.642386e-02	ci right 8.920359e-02	k: 14049	n:160000
ROPN1   160000 perm   38 sec   (4213 perm/sec)   p_kst 8.780625e-02   p_cons 9.375000e-03   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 9.741460e-02	ci left: 8.975433e-03	ci right 9.900236e-03	k: 1603	n:170000
KS ci ratio: 3.062018e-02	ci left: 8.658148e-02	ci right 8.927965e-02	k: 14947	n:170000
ROPN1   170000 perm   41 sec   (4140 perm/sec)   p_kst 8.792353e-02   p_cons 9.429412e-03   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 9.501946e-02	ci left: 8.921379e-03	ci right 9.816752e-03	k: 1685	n:180000
KS ci ratio: 2.974953e-02	ci left: 8.666202e-02	ci right 8.928460e-02	k: 15834	n:180000
ROPN1   180000 perm   44 sec   (4071 perm/sec)   p_kst 8.796667e-02   p_cons 9.361111e-03   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 9.260781e-02	ci left: 8.909261e-03	ci right 9.779492e-03	k: 1774	n:190000
KS ci ratio: 2.893019e-02	ci left: 8.683964e-02	ci right 8.939400e-02	k: 16741	n:190000
ROPN1   190000 perm   47 sec   (4002 perm/sec)   p_kst 8.811053e-02   p_cons 9.336842e-03   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 9.049352e-02	ci left: 8.874174e-03	ci right 9.720140e-03	k: 1858	n:200000
KS ci ratio: 2.817765e-02	ci left: 8.698547e-02	ci right 8.947648e-02	k: 17645	n:200000
ROPN1   200000 perm   51 sec   (3935 perm/sec)   p_kst 8.822500e-02   p_cons 9.290000e-03   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 8.815210e-02	ci left: 8.917156e-03	ci right 9.744092e-03	k: 1958	n:210000
KS ci ratio: 2.750370e-02	ci left: 8.698568e-02	ci right 8.941617e-02	k: 18521	n:210000
ROPN1   210000 perm   54 sec   (3867 perm/sec)   p_kst 8.819524e-02   p_cons 9.323810e-03   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 8.611023e-02	ci left: 8.929796e-03	ci right 9.737757e-03	k: 2052	n:220000
KS ci ratio: 2.680700e-02	ci left: 8.739765e-02	ci right 8.977684e-02	k: 19488	n:220000
ROPN1   220000 perm   58 sec   (3801 perm/sec)   p_kst 8.858182e-02   p_cons 9.327273e-03   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 8.434287e-02	ci left: 8.911739e-03	ci right 9.700701e-03	k: 2139	n:230000
KS ci ratio: 2.622332e-02	ci left: 8.738982e-02	ci right 8.971621e-02	k: 20366	n:230000
ROPN1   230000 perm   62 sec   (3737 perm/sec)   p_kst 8.854783e-02   p_cons 9.300000e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 8.232630e-02	ci left: 8.972890e-03	ci right 9.747362e-03	k: 2245	n:240000
KS ci ratio: 2.567286e-02	ci left: 8.740387e-02	ci right 8.968107e-02	k: 21249	n:240000
ROPN1   240000 perm   65 sec   (3679 perm/sec)   p_kst 8.853750e-02   p_cons 9.354167e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 8.088283e-02	ci left: 8.931355e-03	ci right 9.688087e-03	k: 2326	n:250000
KS ci ratio: 2.513761e-02	ci left: 8.753262e-02	ci right 8.976493e-02	k: 22161	n:250000
ROPN1   250000 perm   69 sec   (3623 perm/sec)   p_kst 8.864400e-02   p_cons 9.304000e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 7.928041e-02	ci left: 8.945911e-03	ci right 9.688166e-03	k: 2421	n:260000
KS ci ratio: 2.469326e-02	ci left: 8.726943e-02	ci right 8.945514e-02	k: 22973	n:260000
ROPN1   260000 perm   73 sec   (3567 perm/sec)   p_kst 8.835769e-02   p_cons 9.311538e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 7.789465e-02	ci left: 8.930468e-03	ci right 9.657902e-03	k: 2508	n:270000
KS ci ratio: 2.424539e-02	ci left: 8.719920e-02	ci right 8.934298e-02	k: 23832	n:270000
ROPN1   270000 perm   77 sec   (3510 perm/sec)   p_kst 8.826667e-02   p_cons 9.288889e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 7.646028e-02	ci left: 8.944262e-03	ci right 9.658807e-03	k: 2603	n:280000
KS ci ratio: 2.380623e-02	ci left: 8.723378e-02	ci right 8.933903e-02	k: 24719	n:280000
ROPN1   280000 perm   81 sec   (3447 perm/sec)   p_kst 8.828214e-02   p_cons 9.296429e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 7.496229e-02	ci left: 8.991061e-03	ci right 9.694659e-03	k: 2708	n:290000
KS ci ratio: 2.340313e-02	ci left: 8.717713e-02	ci right 8.924490e-02	k: 25580	n:290000
ROPN1   290000 perm   85 sec   (3393 perm/sec)   p_kst 8.820690e-02   p_cons 9.337931e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 7.372111e-02	ci left: 8.992325e-03	ci right 9.683870e-03	k: 2800	n:300000
KS ci ratio: 2.299744e-02	ci left: 8.728038e-02	ci right 8.931425e-02	k: 26488	n:300000
ROPN1   300000 perm   90 sec   (3331 perm/sec)   p_kst 8.829333e-02   p_cons 9.333333e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 7.265377e-02	ci left: 8.965087e-03	ci right 9.644134e-03	k: 2883	n:310000
KS ci ratio: 2.258772e-02	ci left: 8.755057e-02	ci right 8.955391e-02	k: 27450	n:310000
ROPN1   310000 perm   95 sec   (3280 perm/sec)   p_kst 8.854839e-02   p_cons 9.300000e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 7.149781e-02	ci left: 8.973385e-03	ci right 9.641797e-03	k: 2977	n:320000
KS ci ratio: 2.224255e-02	ci left: 8.749012e-02	ci right 8.946109e-02	k: 28311	n:320000
ROPN1   320000 perm   99 sec   (3235 perm/sec)   p_kst 8.847188e-02   p_cons 9.303125e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 7.048804e-02	ci left: 8.957441e-03	ci right 9.614856e-03	k: 3063	n:330000
KS ci ratio: 2.187983e-02	ci left: 8.767478e-02	ci right 8.961730e-02	k: 29252	n:330000
ROPN1   330000 perm   104 sec   (3186 perm/sec)   p_kst 8.864242e-02   p_cons 9.281818e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 6.935340e-02	ci left: 8.985856e-03	ci right 9.634313e-03	k: 3164	n:340000
KS ci ratio: 2.156370e-02	ci left: 8.762931e-02	ci right 8.954242e-02	k: 30118	n:340000
ROPN1   340000 perm   108 sec   (3136 perm/sec)   p_kst 8.858235e-02   p_cons 9.305882e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 6.834580e-02	ci left: 8.993066e-03	ci right 9.632241e-03	k: 3258	n:350000
KS ci ratio: 2.126089e-02	ci left: 8.758663e-02	ci right 8.947162e-02	k: 30984	n:350000
ROPN1   350000 perm   113 sec   (3098 perm/sec)   p_kst 8.852571e-02   p_cons 9.308571e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 6.733023e-02	ci left: 9.013596e-03	ci right 9.644340e-03	k: 3357	n:360000
KS ci ratio: 2.096795e-02	ci left: 8.756585e-02	ci right 8.942412e-02	k: 31857	n:360000
ROPN1   360000 perm   118 sec   (3060 perm/sec)   p_kst 8.849167e-02   p_cons 9.325000e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 6.652394e-02	ci left: 8.987894e-03	ci right 9.609016e-03	k: 3439	n:370000
KS ci ratio: 2.068333e-02	ci left: 8.757326e-02	ci right 8.940616e-02	k: 32740	n:370000
ROPN1   370000 perm   122 sec   (3025 perm/sec)   p_kst 8.848649e-02   p_cons 9.294595e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 6.559570e-02	ci left: 9.005008e-03	ci right 9.618299e-03	k: 3537	n:380000
KS ci ratio: 2.042133e-02	ci left: 8.749139e-02	ci right 8.929910e-02	k: 33589	n:380000
ROPN1   380000 perm   127 sec   (2991 perm/sec)   p_kst 8.839211e-02   p_cons 9.307895e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 6.483137e-02	ci left: 8.985979e-03	ci right 9.590576e-03	k: 3621	n:390000
KS ci ratio: 2.015524e-02	ci left: 8.752361e-02	ci right 8.930815e-02	k: 34481	n:390000
ROPN1   390000 perm   132 sec   (2956 perm/sec)   p_kst 8.841282e-02   p_cons 9.284615e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 6.413683e-02	ci left: 8.955641e-03	ci right 9.551501e-03	k: 3700	n:400000
KS ci ratio: 1.990422e-02	ci left: 8.751454e-02	ci right 8.927642e-02	k: 35357	n:400000
ROPN1   400000 perm   137 sec   (2920 perm/sec)   p_kst 8.839250e-02   p_cons 9.250000e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 6.335427e-02	ci left: 8.958024e-03	ci right 9.546504e-03	k: 3792	n:410000
KS ci ratio: 1.965373e-02	ci left: 8.757647e-02	ci right 8.931716e-02	k: 36262	n:410000
ROPN1   410000 perm   142 sec   (2887 perm/sec)   p_kst 8.844390e-02   p_cons 9.248780e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 6.263223e-02	ci left: 8.950960e-03	ci right 9.532031e-03	k: 3880	n:420000
KS ci ratio: 1.941962e-02	ci left: 8.757632e-02	ci right 8.929603e-02	k: 37142	n:420000
ROPN1   420000 perm   147 sec   (2853 perm/sec)   p_kst 8.843333e-02   p_cons 9.238095e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 6.194220e-02	ci left: 8.941971e-03	ci right 9.515834e-03	k: 3967	n:430000
KS ci ratio: 1.918567e-02	ci left: 8.764344e-02	ci right 8.934351e-02	k: 38051	n:430000
ROPN1   430000 perm   152 sec   (2821 perm/sec)   p_kst 8.849070e-02   p_cons 9.225581e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 6.128211e-02	ci left: 8.931186e-03	ci right 9.498032e-03	k: 4053	n:440000
KS ci ratio: 1.897119e-02	ci left: 8.761258e-02	ci right 8.929285e-02	k: 38918	n:440000
ROPN1   440000 perm   158 sec   (2789 perm/sec)   p_kst 8.845000e-02   p_cons 9.211364e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 6.059838e-02	ci left: 8.934045e-03	ci right 9.494524e-03	k: 4145	n:450000
KS ci ratio: 1.874566e-02	ci left: 8.773809e-02	ci right 8.940055e-02	k: 39855	n:450000
ROPN1   450000 perm   163 sec   (2757 perm/sec)   p_kst 8.856667e-02   p_cons 9.211111e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 6.005155e-02	ci left: 8.902547e-03	ci right 9.455835e-03	k: 4221	n:460000
KS ci ratio: 1.853971e-02	ci left: 8.775651e-02	ci right 8.940085e-02	k: 40745	n:460000
ROPN1   460000 perm   169 sec   (2727 perm/sec)   p_kst 8.857609e-02   p_cons 9.176087e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 5.946343e-02	ci left: 8.889183e-03	ci right 9.436043e-03	k: 4305	n:470000
KS ci ratio: 1.833653e-02	ci left: 8.780814e-02	ci right 8.943523e-02	k: 41651	n:470000
ROPN1   470000 perm   174 sec   (2697 perm/sec)   p_kst 8.861915e-02   p_cons 9.159574e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 5.886520e-02	ci left: 8.884612e-03	ci right 9.425505e-03	k: 4393	n:480000
KS ci ratio: 1.815253e-02	ci left: 8.774568e-02	ci right 8.935512e-02	k: 42503	n:480000
ROPN1   480000 perm   180 sec   (2668 perm/sec)   p_kst 8.854792e-02   p_cons 9.152083e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 5.819301e-02	ci left: 8.908413e-03	ci right 9.444354e-03	k: 4495	n:490000
KS ci ratio: 1.797237e-02	ci left: 8.770007e-02	ci right 8.929255e-02	k: 43362	n:490000
ROPN1   490000 perm   186 sec   (2640 perm/sec)   p_kst 8.849388e-02   p_cons 9.173469e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 5.760026e-02	ci left: 8.913553e-03	ci right 9.444158e-03	k: 4588	n:500000
KS ci ratio: 1.779725e-02	ci left: 8.765836e-02	ci right 8.923441e-02	k: 44222	n:500000
ROPN1   500000 perm   191 sec   (2612 perm/sec)   p_kst 8.844400e-02   p_cons 9.176000e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 5.708682e-02	ci left: 8.899187e-03	ci right 9.424059e-03	k: 4671	n:510000
KS ci ratio: 1.762907e-02	ci left: 8.760078e-02	ci right 8.916076e-02	k: 45073	n:510000
ROPN1   510000 perm   197 sec   (2584 perm/sec)   p_kst 8.837843e-02   p_cons 9.158824e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 5.653289e-02	ci left: 8.902459e-03	ci right 9.422263e-03	k: 4763	n:520000
KS ci ratio: 1.745453e-02	ci left: 8.764700e-02	ci right 8.919220e-02	k: 45977	n:520000
ROPN1   520000 perm   203 sec   (2557 perm/sec)   p_kst 8.841731e-02   p_cons 9.159615e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 5.600643e-02	ci left: 8.901910e-03	ci right 9.416685e-03	k: 4853	n:530000
KS ci ratio: 1.728730e-02	ci left: 8.767088e-02	ci right 8.920154e-02	k: 46870	n:530000
ROPN1   530000 perm   209 sec   (2531 perm/sec)   p_kst 8.843396e-02   p_cons 9.156604e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 5.547176e-02	ci left: 8.908708e-03	ci right 9.418801e-03	k: 4947	n:540000
KS ci ratio: 1.713030e-02	ci left: 8.764229e-02	ci right 8.915842e-02	k: 47735	n:540000
ROPN1   540000 perm   216 sec   (2505 perm/sec)   p_kst 8.839815e-02   p_cons 9.161111e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 5.496862e-02	ci left: 8.909902e-03	ci right 9.415289e-03	k: 5038	n:550000
KS ci ratio: 1.697768e-02	ci left: 8.761299e-02	ci right 8.911498e-02	k: 48599	n:550000
ROPN1   550000 perm   222 sec   (2480 perm/sec)   p_kst 8.836182e-02   p_cons 9.160000e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 5.449502e-02	ci left: 8.905788e-03	ci right 9.406453e-03	k: 5126	n:560000
KS ci ratio: 1.682740e-02	ci left: 8.760081e-02	ci right 8.908917e-02	k: 49472	n:560000
ROPN1   560000 perm   228 sec   (2456 perm/sec)   p_kst 8.834286e-02   p_cons 9.153571e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 5.407532e-02	ci left: 8.887990e-03	ci right 9.383685e-03	k: 5206	n:570000
KS ci ratio: 1.668776e-02	ci left: 8.752444e-02	ci right 8.899904e-02	k: 50308	n:570000
ROPN1   570000 perm   234 sec   (2431 perm/sec)   p_kst 8.825965e-02   p_cons 9.133333e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 5.360382e-02	ci left: 8.891234e-03	ci right 9.382653e-03	k: 5298	n:580000
KS ci ratio: 1.654516e-02	ci left: 8.751260e-02	ci right 8.897428e-02	k: 51180	n:580000
ROPN1   580000 perm   241 sec   (2407 perm/sec)   p_kst 8.824138e-02   p_cons 9.134483e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 5.322420e-02	ci left: 8.867626e-03	ci right 9.354162e-03	k: 5374	n:590000
KS ci ratio: 1.640131e-02	ci left: 8.754849e-02	ci right 8.899793e-02	k: 52080	n:590000
ROPN1   590000 perm   247 sec   (2384 perm/sec)   p_kst 8.827119e-02   p_cons 9.108475e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 5.287701e-02	ci left: 8.836592e-03	ci right 9.318166e-03	k: 5445	n:600000
KS ci ratio: 1.625644e-02	ci left: 8.762973e-02	ci right 8.906758e-02	k: 53008	n:600000
ROPN1   600000 perm   254 sec   (2361 perm/sec)   p_kst 8.834667e-02   p_cons 9.075000e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 5.240727e-02	ci left: 8.850272e-03	ci right 9.328178e-03	k: 5543	n:610000
KS ci ratio: 1.612797e-02	ci left: 8.758259e-02	ci right 8.900821e-02	k: 53859	n:610000
ROPN1   610000 perm   261 sec   (2339 perm/sec)   p_kst 8.829344e-02   p_cons 9.086885e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 5.197772e-02	ci left: 8.853977e-03	ci right 9.328047e-03	k: 5635	n:620000
KS ci ratio: 1.599192e-02	ci left: 8.764308e-02	ci right 8.905754e-02	k: 54776	n:620000
ROPN1   620000 perm   268 sec   (2317 perm/sec)   p_kst 8.834839e-02   p_cons 9.088710e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 5.157220e-02	ci left: 8.852878e-03	ci right 9.323081e-03	k: 5724	n:630000
KS ci ratio: 1.586098e-02	ci left: 8.768430e-02	ci right 8.908774e-02	k: 55682	n:630000
ROPN1   630000 perm   274 sec   (2296 perm/sec)   p_kst 8.838413e-02   p_cons 9.085714e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 5.118936e-02	ci left: 8.847200e-03	ci right 9.313510e-03	k: 5810	n:640000
KS ci ratio: 1.575092e-02	ci left: 8.754368e-02	ci right 8.893505e-02	k: 56472	n:640000
ROPN1   640000 perm   281 sec   (2274 perm/sec)   p_kst 8.823750e-02   p_cons 9.078125e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 5.078884e-02	ci left: 8.850824e-03	ci right 9.313568e-03	k: 5902	n:650000
KS ci ratio: 1.562979e-02	ci left: 8.754385e-02	ci right 8.892443e-02	k: 57351	n:650000
ROPN1   650000 perm   288 sec   (2254 perm/sec)   p_kst 8.823231e-02   p_cons 9.080000e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 5.044856e-02	ci left: 8.836397e-03	ci right 9.295201e-03	k: 5982	n:660000
KS ci ratio: 1.551405e-02	ci left: 8.751689e-02	ci right 8.888673e-02	k: 58212	n:660000
ROPN1   660000 perm   296 sec   (2233 perm/sec)   p_kst 8.820000e-02   p_cons 9.063636e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 5.008586e-02	ci left: 8.832728e-03	ci right 9.287950e-03	k: 6069	n:670000
KS ci ratio: 1.539513e-02	ci left: 8.755026e-02	ci right 8.891002e-02	k: 59113	n:670000
ROPN1   670000 perm   303 sec   (2213 perm/sec)   p_kst 8.822836e-02   p_cons 9.058209e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 4.971458e-02	ci left: 8.834989e-03	ci right 9.286855e-03	k: 6160	n:680000
KS ci ratio: 1.528896e-02	ci left: 8.747716e-02	ci right 8.882635e-02	k: 59942	n:680000
ROPN1   680000 perm   310 sec   (2192 perm/sec)   p_kst 8.815000e-02   p_cons 9.058824e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 4.939930e-02	ci left: 8.820018e-03	ci right 9.268176e-03	k: 6239	n:690000
KS ci ratio: 1.517838e-02	ci left: 8.747555e-02	ci right 8.881486e-02	k: 60819	n:690000
ROPN1   690000 perm   318 sec   (2173 perm/sec)   p_kst 8.814348e-02   p_cons 9.042029e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 4.899223e-02	ci left: 8.840764e-03	ci right 9.286170e-03	k: 6343	n:700000
KS ci ratio: 1.505947e-02	ci left: 8.758792e-02	ci right 8.891835e-02	k: 61776	n:700000
ROPN1   700000 perm   325 sec   (2153 perm/sec)   p_kst 8.825143e-02   p_cons 9.061429e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 4.859507e-02	ci left: 8.860940e-03	ci right 9.303642e-03	k: 6447	n:710000
KS ci ratio: 1.495272e-02	ci left: 8.759609e-02	ci right 8.891713e-02	k: 62661	n:710000
ROPN1   710000 perm   333 sec   (2132 perm/sec)   p_kst 8.825493e-02   p_cons 9.080282e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 4.830048e-02	ci left: 8.846263e-03	ci right 9.285478e-03	k: 6526	n:720000
KS ci ratio: 1.485513e-02	ci left: 8.752932e-02	ci right 8.884067e-02	k: 63492	n:720000
ROPN1   720000 perm   341 sec   (2113 perm/sec)   p_kst 8.818333e-02   p_cons 9.063889e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 4.793437e-02	ci left: 8.860421e-03	ci right 9.296913e-03	k: 6626	n:730000
KS ci ratio: 1.475112e-02	ci left: 8.755451e-02	ci right 8.885698e-02	k: 64389	n:730000
ROPN1   730000 perm   348 sec   (2095 perm/sec)   p_kst 8.820411e-02   p_cons 9.076712e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 4.759073e-02	ci left: 8.868867e-03	ci right 9.302557e-03	k: 6722	n:740000
KS ci ratio: 1.465432e-02	ci left: 8.752383e-02	ci right 8.881723e-02	k: 65245	n:740000
ROPN1   740000 perm   356 sec   (2078 perm/sec)   p_kst 8.816892e-02   p_cons 9.083784e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 4.727888e-02	ci left: 8.867875e-03	ci right 9.298597e-03	k: 6811	n:750000
KS ci ratio: 1.455445e-02	ci left: 8.754849e-02	ci right 8.883336e-02	k: 66142	n:750000
ROPN1   750000 perm   364 sec   (2061 perm/sec)   p_kst 8.818933e-02   p_cons 9.081333e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 4.697308e-02	ci left: 8.866917e-03	ci right 9.294732e-03	k: 6900	n:760000
KS ci ratio: 1.446121e-02	ci left: 8.752138e-02	ci right 8.879755e-02	k: 67000	n:760000
ROPN1   760000 perm   372 sec   (2044 perm/sec)   p_kst 8.815789e-02   p_cons 9.078947e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 4.667650e-02	ci left: 8.864710e-03	ci right 9.289645e-03	k: 6988	n:770000
KS ci ratio: 1.437020e-02	ci left: 8.748982e-02	ci right 8.875744e-02	k: 67854	n:770000
ROPN1   770000 perm   380 sec   (2027 perm/sec)   p_kst 8.812208e-02   p_cons 9.075325e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 4.642521e-02	ci left: 8.847360e-03	ci right 9.269119e-03	k: 7064	n:780000
KS ci ratio: 1.428044e-02	ci left: 8.746420e-02	ci right 8.872347e-02	k: 68712	n:780000
ROPN1   780000 perm   388 sec   (2011 perm/sec)   p_kst 8.809231e-02   p_cons 9.056410e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 4.614534e-02	ci left: 8.842968e-03	ci right 9.261909e-03	k: 7150	n:790000
KS ci ratio: 1.419457e-02	ci left: 8.741403e-02	ci right 8.866494e-02	k: 69550	n:790000
ROPN1   790000 perm   396 sec   (1995 perm/sec)   p_kst 8.803797e-02   p_cons 9.050633e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 4.584172e-02	ci left: 8.849816e-03	ci right 9.266250e-03	k: 7245	n:800000
KS ci ratio: 1.411155e-02	ci left: 8.735018e-02	ci right 8.859281e-02	k: 70376	n:800000
ROPN1   800000 perm   404 sec   (1979 perm/sec)   p_kst 8.797000e-02   p_cons 9.056250e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 4.554401e-02	ci left: 8.856504e-03	ci right 9.270475e-03	k: 7340	n:810000
KS ci ratio: 1.402792e-02	ci left: 8.731131e-02	ci right 8.854596e-02	k: 71221	n:810000
ROPN1   810000 perm   413 sec   (1963 perm/sec)   p_kst 8.792716e-02   p_cons 9.061728e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 4.529199e-02	ci left: 8.847361e-03	ci right 9.258557e-03	k: 7422	n:820000
KS ci ratio: 1.394713e-02	ci left: 8.725760e-02	ci right 8.848434e-02	k: 72053	n:820000
ROPN1   820000 perm   421 sec   (1948 perm/sec)   p_kst 8.786951e-02   p_cons 9.051220e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 4.500178e-02	ci left: 8.855124e-03	ci right 9.263976e-03	k: 7518	n:830000
KS ci ratio: 1.386075e-02	ci left: 8.728568e-02	ci right 8.850515e-02	k: 72952	n:830000
ROPN1   830000 perm   429 sec   (1933 perm/sec)   p_kst 8.789398e-02   p_cons 9.057831e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 4.478240e-02	ci left: 8.836811e-03	ci right 9.242776e-03	k: 7592	n:840000
KS ci ratio: 1.377554e-02	ci left: 8.731786e-02	ci right 8.853022e-02	k: 73855	n:840000
ROPN1   840000 perm   438 sec   (1917 perm/sec)   p_kst 8.792262e-02   p_cons 9.038095e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 4.453689e-02	ci left: 8.830568e-03	ci right 9.233965e-03	k: 7676	n:850000
KS ci ratio: 1.369399e-02	ci left: 8.732468e-02	ci right 8.852990e-02	k: 74737	n:850000
ROPN1   850000 perm   447 sec   (1902 perm/sec)   p_kst 8.792588e-02   p_cons 9.030588e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 4.426949e-02	ci left: 8.834826e-03	ci right 9.235933e-03	k: 7769	n:860000
KS ci ratio: 1.361545e-02	ci left: 8.731281e-02	ci right 8.851090e-02	k: 75603	n:860000
ROPN1   860000 perm   456 sec   (1887 perm/sec)   p_kst 8.791047e-02   p_cons 9.033721e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 4.397299e-02	ci left: 8.852636e-03	ci right 9.251792e-03	k: 7874	n:870000
KS ci ratio: 1.353640e-02	ci left: 8.732300e-02	ci right 8.851422e-02	k: 76488	n:870000
ROPN1   870000 perm   465 sec   (1872 perm/sec)   p_kst 8.791724e-02   p_cons 9.050575e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 4.372110e-02	ci left: 8.854314e-03	ci right 9.251201e-03	k: 7965	n:880000
KS ci ratio: 1.345624e-02	ci left: 8.736244e-02	ci right 8.854709e-02	k: 77399	n:880000
ROPN1   880000 perm   474 sec   (1858 perm/sec)   p_kst 8.795341e-02   p_cons 9.051136e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 4.347076e-02	ci left: 8.857071e-03	ci right 9.251752e-03	k: 8057	n:890000
KS ci ratio: 1.337617e-02	ci left: 8.741670e-02	ci right 8.859497e-02	k: 78324	n:890000
ROPN1   890000 perm   483 sec   (1844 perm/sec)   p_kst 8.800449e-02   p_cons 9.052809e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 4.319526e-02	ci left: 8.871865e-03	ci right 9.264638e-03	k: 8160	n:900000
KS ci ratio: 1.329733e-02	ci left: 8.747198e-02	ci right 8.864400e-02	k: 79251	n:900000
ROPN1   900000 perm   492 sec   (1830 perm/sec)   p_kst 8.805667e-02   p_cons 9.066667e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 4.296956e-02	ci left: 8.867859e-03	ci right 9.258352e-03	k: 8246	n:910000
KS ci ratio: 1.322683e-02	ci left: 8.744171e-02	ci right 8.860707e-02	k: 80101	n:910000
ROPN1   910000 perm   501 sec   (1817 perm/sec)   p_kst 8.802308e-02   p_cons 9.061538e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 4.275254e-02	ci left: 8.861795e-03	ci right 9.250001e-03	k: 8330	n:920000
KS ci ratio: 1.315246e-02	ci left: 8.747280e-02	ci right 8.863197e-02	k: 81007	n:920000
ROPN1   920000 perm   510 sec   (1803 perm/sec)   p_kst 8.805109e-02   p_cons 9.054348e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 4.250820e-02	ci left: 8.868633e-03	ci right 9.254864e-03	k: 8426	n:930000
KS ci ratio: 1.307880e-02	ci left: 8.750968e-02	ci right 8.866278e-02	k: 81919	n:930000
ROPN1   930000 perm   519 sec   (1791 perm/sec)   p_kst 8.808495e-02   p_cons 9.060215e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 4.229054e-02	ci left: 8.865857e-03	ci right 9.249943e-03	k: 8513	n:940000
KS ci ratio: 1.300671e-02	ci left: 8.754154e-02	ci right 8.868866e-02	k: 82827	n:940000
ROPN1   940000 perm   529 sec   (1777 perm/sec)   p_kst 8.811383e-02   p_cons 9.056383e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 4.207372e-02	ci left: 8.864187e-03	ci right 9.246184e-03	k: 8601	n:950000
KS ci ratio: 1.293851e-02	ci left: 8.753916e-02	ci right 8.868019e-02	k: 83703	n:950000
ROPN1   950000 perm   538 sec   (1765 perm/sec)   p_kst 8.810842e-02   p_cons 9.053684e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 4.184563e-02	ci left: 8.868742e-03	ci right 9.248813e-03	k: 8695	n:960000
KS ci ratio: 1.287178e-02	ci left: 8.753166e-02	ci right 8.866666e-02	k: 84574	n:960000
ROPN1   960000 perm   548 sec   (1752 perm/sec)   p_kst 8.809792e-02   p_cons 9.057292e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 4.163794e-02	ci left: 8.866066e-03	ci right 9.244091e-03	k: 8782	n:970000
KS ci ratio: 1.280214e-02	ci left: 8.757366e-02	ci right 8.870302e-02	k: 85493	n:970000
ROPN1   970000 perm   558 sec   (1739 perm/sec)   p_kst 8.813711e-02   p_cons 9.053608e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 4.141447e-02	ci left: 8.871528e-03	ci right 9.247709e-03	k: 8877	n:980000
KS ci ratio: 1.273475e-02	ci left: 8.760058e-02	ci right 8.872430e-02	k: 86398	n:980000
ROPN1   980000 perm   568 sec   (1727 perm/sec)   p_kst 8.816122e-02   p_cons 9.058163e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 4.119688e-02	ci left: 8.875886e-03	ci right 9.250227e-03	k: 8971	n:990000
KS ci ratio: 1.267024e-02	ci left: 8.760381e-02	ci right 8.872183e-02	k: 87280	n:990000
ROPN1   990000 perm   578 sec   (1714 perm/sec)   p_kst 8.816162e-02   p_cons 9.061616e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 4.096672e-02	ci left: 8.887091e-03	ci right 9.259761e-03	k: 9072	n:1000000
KS ci ratio: 1.260482e-02	ci left: 8.763092e-02	ci right 8.874347e-02	k: 88186	n:1000000
ROPN1   1000000 perm   587 sec   (1702 perm/sec)   p_kst 8.818600e-02   p_cons 9.072000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 4.072470e-02	ci left: 8.904940e-03	ci right 9.276101e-03	k: 9180	n:1010000
KS ci ratio: 1.253986e-02	ci left: 8.766441e-02	ci right 8.877161e-02	k: 89099	n:1010000
ROPN1   1010000 perm   597 sec   (1691 perm/sec)   p_kst 8.821683e-02   p_cons 9.089109e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 4.053981e-02	ci left: 8.899153e-03	ci right 9.268349e-03	k: 9264	n:1020000
KS ci ratio: 1.247878e-02	ci left: 8.766011e-02	ci right 8.876183e-02	k: 89974	n:1020000
ROPN1   1020000 perm   607 sec   (1679 perm/sec)   p_kst 8.820980e-02   p_cons 9.082353e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 4.033347e-02	ci left: 8.904054e-03	ci right 9.271530e-03	k: 9359	n:1030000
KS ci ratio: 1.242069e-02	ci left: 8.762881e-02	ci right 8.872497e-02	k: 90821	n:1030000
ROPN1   1030000 perm   618 sec   (1668 perm/sec)   p_kst 8.817573e-02   p_cons 9.086408e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 4.016242e-02	ci left: 8.894586e-03	ci right 9.260079e-03	k: 9439	n:1040000
KS ci ratio: 1.236030e-02	ci left: 8.763838e-02	ci right 8.872930e-02	k: 91710	n:1040000
ROPN1   1040000 perm   628 sec   (1657 perm/sec)   p_kst 8.818269e-02   p_cons 9.075962e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 3.994908e-02	ci left: 8.905104e-03	ci right 9.269040e-03	k: 9540	n:1050000
KS ci ratio: 1.229888e-02	ci left: 8.767248e-02	ci right 8.875836e-02	k: 92625	n:1050000
ROPN1   1050000 perm   638 sec   (1645 perm/sec)   p_kst 8.821429e-02   p_cons 9.085714e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 3.975367e-02	ci left: 8.908889e-03	ci right 9.271159e-03	k: 9634	n:1060000
KS ci ratio: 1.224167e-02	ci left: 8.766268e-02	ci right 8.874335e-02	k: 93494	n:1060000
ROPN1   1060000 perm   649 sec   (1634 perm/sec)   p_kst 8.820189e-02   p_cons 9.088679e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 3.956931e-02	ci left: 8.908907e-03	ci right 9.269459e-03	k: 9724	n:1070000
KS ci ratio: 1.218349e-02	ci left: 8.767637e-02	ci right 8.875203e-02	k: 94388	n:1070000
ROPN1   1070000 perm   659 sec   (1623 perm/sec)   p_kst 8.821308e-02   p_cons 9.087850e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 3.938344e-02	ci left: 8.910762e-03	ci right 9.269656e-03	k: 9816	n:1080000
KS ci ratio: 1.212619e-02	ci left: 8.768889e-02	ci right 8.875961e-02	k: 95281	n:1080000
ROPN1   1080000 perm   670 sec   (1612 perm/sec)   p_kst 8.822315e-02   p_cons 9.088889e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 3.914837e-02	ci left: 8.936208e-03	ci right 9.293931e-03	k: 9934	n:1090000
KS ci ratio: 1.207122e-02	ci left: 8.768107e-02	ci right 8.874681e-02	k: 96152	n:1090000
ROPN1   1090000 perm   681 sec   (1601 perm/sec)   p_kst 8.821284e-02   p_cons 9.113761e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 3.894091e-02	ci left: 8.950394e-03	ci right 9.306744e-03	k: 10040	n:1100000
KS ci ratio: 1.201691e-02	ci left: 8.767431e-02	ci right 8.873514e-02	k: 97024	n:1100000
ROPN1   1100000 perm   692 sec   (1590 perm/sec)   p_kst 8.820364e-02   p_cons 9.127273e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 3.877724e-02	ci left: 8.945592e-03	ci right 9.300220e-03	k: 10125	n:1110000
KS ci ratio: 1.196172e-02	ci left: 8.768924e-02	ci right 8.874534e-02	k: 97920	n:1110000
ROPN1   1110000 perm   703 sec   (1580 perm/sec)   p_kst 8.821622e-02   p_cons 9.121622e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 3.860226e-02	ci left: 8.947069e-03	ci right 9.300120e-03	k: 10217	n:1120000
KS ci ratio: 1.190346e-02	ci left: 8.775556e-02	ci right 8.880728e-02	k: 98874	n:1120000
ROPN1   1120000 perm   714 sec   (1569 perm/sec)   p_kst 8.828036e-02   p_cons 9.122321e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 3.845788e-02	ci left: 8.935375e-03	ci right 9.286617e-03	k: 10294	n:1130000
KS ci ratio: 1.185300e-02	ci left: 8.772629e-02	ci right 8.877317e-02	k: 99721	n:1130000
ROPN1   1130000 perm   725 sec   (1559 perm/sec)   p_kst 8.824867e-02   p_cons 9.109735e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 3.829461e-02	ci left: 8.933447e-03	ci right 9.283089e-03	k: 10382	n:1140000
KS ci ratio: 1.180164e-02	ci left: 8.771853e-02	ci right 8.876076e-02	k: 100592	n:1140000
ROPN1   1140000 perm   736 sec   (1550 perm/sec)   p_kst 8.823860e-02   p_cons 9.107018e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 3.812973e-02	ci left: 8.933278e-03	ci right 9.281375e-03	k: 10472	n:1150000
KS ci ratio: 1.174986e-02	ci left: 8.772566e-02	ci right 8.876337e-02	k: 101480	n:1150000
ROPN1   1150000 perm   747 sec   (1540 perm/sec)   p_kst 8.824348e-02   p_cons 9.106087e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 3.793978e-02	ci left: 8.945924e-03	ci right 9.292740e-03	k: 10577	n:1160000
KS ci ratio: 1.169650e-02	ci left: 8.776363e-02	ci right 8.879704e-02	k: 102404	n:1160000
ROPN1   1160000 perm   758 sec   (1531 perm/sec)   p_kst 8.827931e-02   p_cons 9.118103e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 3.777228e-02	ci left: 8.949045e-03	ci right 9.294417e-03	k: 10671	n:1170000
KS ci ratio: 1.164652e-02	ci left: 8.776431e-02	ci right 8.879328e-02	k: 103285	n:1170000
ROPN1   1170000 perm   770 sec   (1520 perm/sec)   p_kst 8.827778e-02   p_cons 9.120513e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 3.759640e-02	ci left: 8.957154e-03	ci right 9.301194e-03	k: 10771	n:1180000
KS ci ratio: 1.159559e-02	ci left: 8.778696e-02	ci right 8.881167e-02	k: 104192	n:1180000
ROPN1   1180000 perm   782 sec   (1510 perm/sec)   p_kst 8.829831e-02   p_cons 9.127966e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 3.745601e-02	ci left: 8.949311e-03	ci right 9.291740e-03	k: 10852	n:1190000
KS ci ratio: 1.154604e-02	ci left: 8.779919e-02	ci right 8.881963e-02	k: 105087	n:1190000
ROPN1   1190000 perm   793 sec   (1500 perm/sec)   p_kst 8.830840e-02   p_cons 9.119328e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 3.731373e-02	ci left: 8.943253e-03	ci right 9.284122e-03	k: 10935	n:1200000
KS ci ratio: 1.149730e-02	ci left: 8.780872e-02	ci right 8.882493e-02	k: 105979	n:1200000
ROPN1   1200000 perm   805 sec   (1490 perm/sec)   p_kst 8.831583e-02   p_cons 9.112500e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 3.714075e-02	ci left: 8.952856e-03	ci right 9.292475e-03	k: 11037	n:1210000
KS ci ratio: 1.144976e-02	ci left: 8.780986e-02	ci right 8.882186e-02	k: 106861	n:1210000
ROPN1   1210000 perm   818 sec   (1480 perm/sec)   p_kst 8.831488e-02   p_cons 9.121488e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 3.698525e-02	ci left: 8.954995e-03	ci right 9.293243e-03	k: 11130	n:1220000
KS ci ratio: 1.140095e-02	ci left: 8.783716e-02	ci right 8.884513e-02	k: 107775	n:1220000
ROPN1   1220000 perm   830 sec   (1471 perm/sec)   p_kst 8.834016e-02   p_cons 9.122951e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 3.682671e-02	ci left: 8.959519e-03	ci right 9.296457e-03	k: 11226	n:1230000
KS ci ratio: 1.135471e-02	ci left: 8.783645e-02	ci right 8.884029e-02	k: 108655	n:1230000
ROPN1   1230000 perm   841 sec   (1462 perm/sec)   p_kst 8.833740e-02   p_cons 9.126829e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 3.668982e-02	ci left: 8.954384e-03	ci right 9.289850e-03	k: 11310	n:1240000
KS ci ratio: 1.130953e-02	ci left: 8.782851e-02	ci right 8.882825e-02	k: 109526	n:1240000
ROPN1   1240000 perm   853 sec   (1453 perm/sec)   p_kst 8.832742e-02   p_cons 9.120968e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 3.653180e-02	ci left: 8.960432e-03	ci right 9.294649e-03	k: 11408	n:1250000
KS ci ratio: 1.126439e-02	ci left: 8.782790e-02	ci right 8.882361e-02	k: 110406	n:1250000
ROPN1   1250000 perm   865 sec   (1444 perm/sec)   p_kst 8.832480e-02   p_cons 9.126400e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 3.639976e-02	ci left: 8.954589e-03	ci right 9.287356e-03	k: 11491	n:1260000
KS ci ratio: 1.121723e-02	ci left: 8.786372e-02	ci right 8.885564e-02	k: 111332	n:1260000
ROPN1   1260000 perm   877 sec   (1436 perm/sec)   p_kst 8.835873e-02   p_cons 9.119841e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 3.623440e-02	ci left: 8.966008e-03	ci right 9.297654e-03	k: 11596	n:1270000
KS ci ratio: 1.117203e-02	ci left: 8.787934e-02	ci right 8.886742e-02	k: 112233	n:1270000
ROPN1   1270000 perm   889 sec   (1428 perm/sec)   p_kst 8.837244e-02   p_cons 9.130709e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 3.611803e-02	ci left: 8.954024e-03	ci right 9.284141e-03	k: 11671	n:1280000
KS ci ratio: 1.112797e-02	ci left: 8.788616e-02	ci right 8.887039e-02	k: 113123	n:1280000
ROPN1   1280000 perm   901 sec   (1420 perm/sec)   p_kst 8.837734e-02   p_cons 9.117969e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 3.596726e-02	ci left: 8.959898e-03	ci right 9.288824e-03	k: 11769	n:1290000
KS ci ratio: 1.108608e-02	ci left: 8.786891e-02	ci right 8.884922e-02	k: 113982	n:1290000
ROPN1   1290000 perm   914 sec   (1412 perm/sec)   p_kst 8.835814e-02   p_cons 9.123256e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 3.581074e-02	ci left: 8.969496e-03	ci right 9.297312e-03	k: 11872	n:1300000
KS ci ratio: 1.104075e-02	ci left: 8.790871e-02	ci right 8.888543e-02	k: 114915	n:1300000
ROPN1   1300000 perm   926 sec   (1404 perm/sec)   p_kst 8.839615e-02   p_cons 9.132308e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 3.568333e-02	ci left: 8.965332e-03	ci right 9.291806e-03	k: 11957	n:1310000
KS ci ratio: 1.099509e-02	ci left: 8.796086e-02	ci right 8.893409e-02	k: 115865	n:1310000
ROPN1   1310000 perm   939 sec   (1396 perm/sec)   p_kst 8.844656e-02   p_cons 9.127481e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 3.556919e-02	ci left: 8.955225e-03	ci right 9.280267e-03	k: 12034	n:1320000
KS ci ratio: 1.095138e-02	ci left: 8.799182e-02	ci right 8.896150e-02	k: 116788	n:1320000
ROPN1   1320000 perm   951 sec   (1388 perm/sec)   p_kst 8.847576e-02   p_cons 9.116667e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 3.543990e-02	ci left: 8.953471e-03	ci right 9.277244e-03	k: 12122	n:1330000
KS ci ratio: 1.091043e-02	ci left: 8.798933e-02	ci right 8.895533e-02	k: 117667	n:1330000
ROPN1   1330000 perm   964 sec   (1380 perm/sec)   p_kst 8.847143e-02   p_cons 9.114286e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 3.529451e-02	ci left: 8.960621e-03	ci right 9.283297e-03	k: 12222	n:1340000
KS ci ratio: 1.086942e-02	ci left: 8.799432e-02	ci right 8.895672e-02	k: 118556	n:1340000
ROPN1   1340000 perm   977 sec   (1372 perm/sec)   p_kst 8.847463e-02   p_cons 9.120896e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 3.516098e-02	ci left: 8.962529e-03	ci right 9.284027e-03	k: 12315	n:1350000
KS ci ratio: 1.083117e-02	ci left: 8.796525e-02	ci right 8.892393e-02	k: 119399	n:1350000
ROPN1   1350000 perm   990 sec   (1364 perm/sec)   p_kst 8.844370e-02   p_cons 9.122222e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 3.503322e-02	ci left: 8.962224e-03	ci right 9.282519e-03	k: 12405	n:1360000
KS ci ratio: 1.079105e-02	ci left: 8.797036e-02	ci right 8.892552e-02	k: 120288	n:1360000
ROPN1   1360000 perm   1003 sec   (1356 perm/sec)   p_kst 8.844706e-02   p_cons 9.121324e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 3.490544e-02	ci left: 8.962648e-03	ci right 9.281768e-03	k: 12496	n:1370000
KS ci ratio: 1.075425e-02	ci left: 8.793243e-02	ci right 8.888391e-02	k: 121118	n:1370000
ROPN1   1370000 perm   1016 sec   (1349 perm/sec)   p_kst 8.840730e-02   p_cons 9.121168e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 3.476512e-02	ci left: 8.970253e-03	ci right 9.288334e-03	k: 12597	n:1380000
KS ci ratio: 1.071560e-02	ci left: 8.792832e-02	ci right 8.887631e-02	k: 121994	n:1380000
ROPN1   1380000 perm   1029 sec   (1341 perm/sec)   p_kst 8.840145e-02   p_cons 9.128261e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 3.464850e-02	ci left: 8.966339e-03	ci right 9.283193e-03	k: 12682	n:1390000
KS ci ratio: 1.067761e-02	ci left: 8.792068e-02	ci right 8.886521e-02	k: 122865	n:1390000
ROPN1   1390000 perm   1042 sec   (1334 perm/sec)   p_kst 8.839209e-02   p_cons 9.123741e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 3.452214e-02	ci left: 8.968148e-03	ci right 9.283887e-03	k: 12775	n:1400000
KS ci ratio: 1.064091e-02	ci left: 8.789962e-02	ci right 8.884065e-02	k: 123717	n:1400000
ROPN1   1400000 perm   1055 sec   (1327 perm/sec)   p_kst 8.836929e-02   p_cons 9.125000e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 3.439985e-02	ci left: 8.968527e-03	ci right 9.283139e-03	k: 12866	n:1410000
KS ci ratio: 1.060352e-02	ci left: 8.789514e-02	ci right 8.883279e-02	k: 124592	n:1410000
ROPN1   1410000 perm   1069 sec   (1319 perm/sec)   p_kst 8.836312e-02   p_cons 9.124823e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 3.429087e-02	ci left: 8.962619e-03	ci right 9.276008e-03	k: 12948	n:1420000
KS ci ratio: 1.056753e-02	ci left: 8.787527e-02	ci right 8.880951e-02	k: 125445	n:1420000
ROPN1   1420000 perm   1082 sec   (1312 perm/sec)   p_kst 8.834155e-02   p_cons 9.118310e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 3.419087e-02	ci left: 8.952634e-03	ci right 9.264743e-03	k: 13024	n:1430000
KS ci ratio: 1.053159e-02	ci left: 8.786056e-02	ci right 8.879145e-02	k: 126305	n:1430000
ROPN1   1430000 perm   1096 sec   (1305 perm/sec)   p_kst 8.832517e-02   p_cons 9.107692e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 3.406943e-02	ci left: 8.954496e-03	ci right 9.265539e-03	k: 13117	n:1440000
KS ci ratio: 1.049397e-02	ci left: 8.787725e-02	ci right 8.880497e-02	k: 127210	n:1440000
ROPN1   1440000 perm   1110 sec   (1297 perm/sec)   p_kst 8.834028e-02   p_cons 9.109028e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 3.397394e-02	ci left: 8.943340e-03	ci right 9.253108e-03	k: 13191	n:1450000
KS ci ratio: 1.045810e-02	ci left: 8.787306e-02	ci right 8.879755e-02	k: 128085	n:1450000
ROPN1   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 8.833448e-02   p_cons 9.097241e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 3.385222e-02	ci left: 8.946601e-03	ci right 9.255351e-03	k: 13286	n:1460000
KS ci ratio: 1.042095e-02	ci left: 8.789422e-02	ci right 8.881563e-02	k: 128997	n:1460000
ROPN1   1460000 perm   1139 sec   (1282 perm/sec)   p_kst 8.835411e-02   p_cons 9.100000e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 3.375472e-02	ci left: 8.937677e-03	ci right 9.245214e-03	k: 13363	n:1470000
KS ci ratio: 1.038622e-02	ci left: 8.788388e-02	ci right 8.880209e-02	k: 129863	n:1470000
ROPN1   1470000 perm   1153 sec   (1275 perm/sec)   p_kst 8.834218e-02   p_cons 9.090476e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 3.363155e-02	ci left: 8.942947e-03	ci right 9.249520e-03	k: 13461	n:1480000
KS ci ratio: 1.035126e-02	ci left: 8.788245e-02	ci right 8.879754e-02	k: 130742	n:1480000
ROPN1   1480000 perm   1167 sec   (1268 perm/sec)   p_kst 8.833919e-02   p_cons 9.095270e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 3.351970e-02	ci left: 8.942822e-03	ci right 9.248352e-03	k: 13551	n:1490000
KS ci ratio: 1.031760e-02	ci left: 8.786631e-02	ci right 8.877824e-02	k: 131599	n:1490000
ROPN1   1490000 perm   1181 sec   (1261 perm/sec)   p_kst 8.832148e-02   p_cons 9.094631e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 3.341020e-02	ci left: 8.942040e-03	ci right 9.246526e-03	k: 13640	n:1500000
KS ci ratio: 1.028414e-02	ci left: 8.785239e-02	ci right 8.876120e-02	k: 132459	n:1500000
ROPN1   1500000 perm   1195 sec   (1255 perm/sec)   p_kst 8.830600e-02   p_cons 9.093333e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 3.329442e-02	ci left: 8.945211e-03	ci right 9.248729e-03	k: 13735	n:1510000
KS ci ratio: 1.025003e-02	ci left: 8.785386e-02	ci right 8.875964e-02	k: 133342	n:1510000
ROPN1   1510000 perm   1209 sec   (1249 perm/sec)   p_kst 8.830596e-02   p_cons 9.096026e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 3.317862e-02	ci left: 8.948994e-03	ci right 9.251565e-03	k: 13831	n:1520000
KS ci ratio: 1.021572e-02	ci left: 8.786384e-02	ci right 8.876668e-02	k: 134238	n:1520000
ROPN1   1520000 perm   1223 sec   (1243 perm/sec)   p_kst 8.831447e-02   p_cons 9.099342e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 3.305924e-02	ci left: 8.955323e-03	ci right 9.256997e-03	k: 13931	n:1530000
KS ci ratio: 1.018179e-02	ci left: 8.787304e-02	ci right 8.877296e-02	k: 135133	n:1530000
ROPN1   1530000 perm   1238 sec   (1236 perm/sec)   p_kst 8.832222e-02   p_cons 9.105229e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 3.295773e-02	ci left: 8.952555e-03	ci right 9.253192e-03	k: 14017	n:1540000
KS ci ratio: 1.014938e-02	ci left: 8.786334e-02	ci right 8.876028e-02	k: 135999	n:1540000
ROPN1   1540000 perm   1252 sec   (1230 perm/sec)   p_kst 8.831104e-02   p_cons 9.101948e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 3.285127e-02	ci left: 8.953023e-03	ci right 9.252687e-03	k: 14108	n:1550000
KS ci ratio: 1.011489e-02	ci left: 8.789175e-02	ci right 8.878592e-02	k: 136924	n:1550000
ROPN1   1550000 perm   1267 sec   (1224 perm/sec)   p_kst 8.833806e-02   p_cons 9.101935e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 3.274351e-02	ci left: 8.954758e-03	ci right 9.253479e-03	k: 14201	n:1560000
KS ci ratio: 1.008216e-02	ci left: 8.789742e-02	ci right 8.878873e-02	k: 137814	n:1560000
ROPN1   1560000 perm   1281 sec   (1217 perm/sec)   p_kst 8.834231e-02   p_cons 9.103205e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 3.263565e-02	ci left: 8.957105e-03	ci right 9.254901e-03	k: 14295	n:1570000
KS ci ratio: 1.004938e-02	ci left: 8.790873e-02	ci right 8.879724e-02	k: 138713	n:1570000
ROPN1   1570000 perm   1296 sec   (1211 perm/sec)   p_kst 8.835223e-02   p_cons 9.105096e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 3.255284e-02	ci left: 8.946240e-03	ci right 9.242906e-03	k: 14368	n:1580000
KS ci ratio: 1.001861e-02	ci left: 8.789276e-02	ci right 8.877837e-02	k: 139569	n:1580000
ROPN1   1580000 perm   1311 sec   (1205 perm/sec)   p_kst 8.833481e-02   p_cons 9.093671e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 3.243327e-02	ci left: 8.956100e-03	ci right 9.251982e-03	k: 14474	n:1590000
KS ci ratio: 9.986133e-03	ci left: 8.790899e-02	ci right 8.879188e-02	k: 140476	n:1590000
ROPN1   1590000 perm   1325 sec   (1200 perm/sec)   p_kst 8.834969e-02   p_cons 9.103145e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 3.234525e-02	ci left: 8.949099e-03	ci right 9.243932e-03	k: 14553	n:1600000
KS ci ratio: 9.954472e-03	ci left: 8.791692e-02	ci right 8.879707e-02	k: 141370	n:1600000
ROPN1   1600000 perm   1340 sec   (1194 perm/sec)   p_kst 8.835625e-02   p_cons 9.095625e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 3.225127e-02	ci left: 8.945883e-03	ci right 9.239738e-03	k: 14638	n:1610000
KS ci ratio: 9.923493e-03	ci left: 8.791856e-02	ci right 8.879597e-02	k: 142254	n:1610000
ROPN1   1610000 perm   1355 sec   (1188 perm/sec)   p_kst 8.835652e-02   p_cons 9.091925e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 3.216802e-02	ci left: 8.937197e-03	ci right 9.229995e-03	k: 14714	n:1620000
KS ci ratio: 9.892953e-03	ci left: 8.791771e-02	ci right 8.879240e-02	k: 143134	n:1620000
ROPN1   1620000 perm   1370 sec   (1182 perm/sec)   p_kst 8.835432e-02   p_cons 9.082716e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 3.206355e-02	ci left: 8.940790e-03	ci right 9.232737e-03	k: 14810	n:1630000
KS ci ratio: 9.863294e-03	ci left: 8.790709e-02	ci right 8.877904e-02	k: 143998	n:1630000
ROPN1   1630000 perm   1385 sec   (1177 perm/sec)   p_kst 8.834233e-02   p_cons 9.085890e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 3.195793e-02	ci left: 8.945551e-03	ci right 9.236674e-03	k: 14908	n:1640000
KS ci ratio: 9.834161e-03	ci left: 8.789234e-02	ci right 8.876155e-02	k: 144855	n:1640000
ROPN1   1640000 perm   1401 sec   (1171 perm/sec)   p_kst 8.832622e-02   p_cons 9.090244e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 3.184370e-02	ci left: 8.955668e-03	ci right 9.246059e-03	k: 15015	n:1650000
KS ci ratio: 9.803071e-03	ci left: 8.791406e-02	ci right 8.878072e-02	k: 145772	n:1650000
ROPN1   1650000 perm   1416 sec   (1165 perm/sec)   p_kst 8.834667e-02   p_cons 9.100000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 3.174023e-02	ci left: 8.960285e-03	ci right 9.249865e-03	k: 15113	n:1660000
KS ci ratio: 9.772456e-03	ci left: 8.793251e-02	ci right 8.879663e-02	k: 146684	n:1660000
ROPN1   1660000 perm   1431 sec   (1160 perm/sec)   p_kst 8.836386e-02   p_cons 9.104217e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 3.162517e-02	ci left: 8.971978e-03	ci right 9.260866e-03	k: 15223	n:1670000
KS ci ratio: 9.741656e-03	ci left: 8.795852e-02	ci right 8.882016e-02	k: 147609	n:1670000
ROPN1   1670000 perm   1447 sec   (1154 perm/sec)   p_kst 8.838862e-02   p_cons 9.115569e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 3.152070e-02	ci left: 8.978219e-03	ci right 9.266335e-03	k: 15324	n:1680000
KS ci ratio: 9.712365e-03	ci left: 8.796402e-02	ci right 8.882311e-02	k: 148500	n:1680000
ROPN1   1680000 perm   1462 sec   (1149 perm/sec)   p_kst 8.839286e-02   p_cons 9.121429e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 3.142856e-02	ci left: 8.977928e-03	ci right 9.265178e-03	k: 15414	n:1690000
KS ci ratio: 9.685185e-03	ci left: 8.793877e-02	ci right 8.879519e-02	k: 149339	n:1690000
ROPN1   1690000 perm   1479 sec   (1143 perm/sec)   p_kst 8.836627e-02   p_cons 9.120710e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 3.133110e-02	ci left: 8.981145e-03	ci right 9.267590e-03	k: 15510	n:1700000
KS ci ratio: 9.656223e-03	ci left: 8.794727e-02	ci right 8.880120e-02	k: 150235	n:1700000
ROPN1   1700000 perm   1495 sec   (1137 perm/sec)   p_kst 8.837353e-02   p_cons 9.123529e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 3.122748e-02	ci left: 8.988387e-03	ci right 9.274098e-03	k: 15613	n:1710000
KS ci ratio: 9.628078e-03	ci left: 8.794633e-02	ci right 8.879775e-02	k: 151115	n:1710000
ROPN1   1710000 perm   1511 sec   (1132 perm/sec)   p_kst 8.837135e-02   p_cons 9.130409e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 3.114789e-02	ci left: 8.982277e-03	ci right 9.267054e-03	k: 15693	n:1720000
KS ci ratio: 9.599796e-03	ci left: 8.795180e-02	ci right 8.880075e-02	k: 152006	n:1720000
ROPN1   1720000 perm   1527 sec   (1126 perm/sec)   p_kst 8.837558e-02   p_cons 9.123837e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 3.106792e-02	ci left: 8.976813e-03	ci right 9.260672e-03	k: 15774	n:1730000
KS ci ratio: 9.570698e-03	ci left: 8.797508e-02	ci right 8.882167e-02	k: 152928	n:1730000
ROPN1   1730000 perm   1543 sec   (1121 perm/sec)   p_kst 8.839769e-02   p_cons 9.117919e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 3.097968e-02	ci left: 8.976545e-03	ci right 9.259575e-03	k: 15864	n:1740000
KS ci ratio: 9.543326e-03	ci left: 8.797344e-02	ci right 8.881758e-02	k: 153807	n:1740000
ROPN1   1740000 perm   1559 sec   (1116 perm/sec)   p_kst 8.839483e-02   p_cons 9.117241e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 3.087169e-02	ci left: 8.988189e-03	ci right 9.270582e-03	k: 15975	n:1750000
KS ci ratio: 9.516592e-03	ci left: 8.796498e-02	ci right 8.880667e-02	k: 154674	n:1750000
ROPN1   1750000 perm   1575 sec   (1111 perm/sec)   p_kst 8.838514e-02   p_cons 9.128571e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 3.077159e-02	ci left: 8.995756e-03	ci right 9.277454e-03	k: 16079	n:1760000
KS ci ratio: 9.489915e-03	ci left: 8.795946e-02	ci right 8.879872e-02	k: 155546	n:1760000
ROPN1   1760000 perm   1591 sec   (1106 perm/sec)   p_kst 8.837841e-02   p_cons 9.135795e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 3.069638e-02	ci left: 8.989222e-03	ci right 9.270015e-03	k: 16158	n:1770000
KS ci ratio: 9.462067e-03	ci left: 8.797768e-02	ci right 8.881463e-02	k: 156460	n:1770000
ROPN1   1770000 perm   1608 sec   (1101 perm/sec)   p_kst 8.839548e-02   p_cons 9.128814e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 3.060176e-02	ci left: 8.994470e-03	ci right 9.274546e-03	k: 16258	n:1780000
KS ci ratio: 9.435318e-03	ci left: 8.798112e-02	ci right 8.881573e-02	k: 157348	n:1780000
ROPN1   1780000 perm   1624 sec   (1096 perm/sec)   p_kst 8.839775e-02   p_cons 9.133708e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 3.053440e-02	ci left: 8.984137e-03	ci right 9.263264e-03	k: 16330	n:1790000
KS ci ratio: 9.407294e-03	ci left: 8.801017e-02	ci right 8.884256e-02	k: 158282	n:1790000
ROPN1   1790000 perm   1641 sec   (1091 perm/sec)   p_kst 8.842570e-02   p_cons 9.122905e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 3.045342e-02	ci left: 8.982190e-03	ci right 9.260504e-03	k: 16417	n:1800000
KS ci ratio: 9.380392e-03	ci left: 8.802393e-02	ci right 8.885406e-02	k: 159189	n:1800000
ROPN1   1800000 perm   1657 sec   (1086 perm/sec)   p_kst 8.843833e-02   p_cons 9.120556e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 3.036938e-02	ci left: 8.982459e-03	ci right 9.259999e-03	k: 16508	n:1810000
KS ci ratio: 9.354424e-03	ci left: 8.802542e-02	ci right 8.885325e-02	k: 160074	n:1810000
ROPN1   1810000 perm   1674 sec   (1082 perm/sec)   p_kst 8.843867e-02   p_cons 9.120442e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 3.029615e-02	ci left: 8.976727e-03	ci right 9.253410e-03	k: 16588	n:1820000
KS ci ratio: 9.329115e-03	ci left: 8.801921e-02	ci right 8.884474e-02	k: 160945	n:1820000
ROPN1   1820000 perm   1690 sec   (1077 perm/sec)   p_kst 8.843132e-02   p_cons 9.114286e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 3.020883e-02	ci left: 8.979736e-03	ci right 9.255700e-03	k: 16684	n:1830000
KS ci ratio: 9.302560e-03	ci left: 8.803816e-02	ci right 8.886150e-02	k: 161862	n:1830000
ROPN1   1830000 perm   1707 sec   (1072 perm/sec)   p_kst 8.844918e-02   p_cons 9.116940e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 3.013313e-02	ci left: 8.976241e-03	ci right 9.251395e-03	k: 16768	n:1840000
KS ci ratio: 9.276325e-03	ci left: 8.805528e-02	ci right 8.887645e-02	k: 162776	n:1840000
ROPN1   1840000 perm   1725 sec   (1067 perm/sec)   p_kst 8.846522e-02   p_cons 9.113043e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 3.005620e-02	ci left: 8.973857e-03	ci right 9.248223e-03	k: 16854	n:1850000
KS ci ratio: 9.249194e-03	ci left: 8.809164e-02	ci right 8.891073e-02	k: 163726	n:1850000
ROPN1   1850000 perm   1742 sec   (1062 perm/sec)   p_kst 8.850054e-02   p_cons 9.110270e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.996469e-02	ci left: 8.980572e-03	ci right 9.254293e-03	k: 16957	n:1860000
KS ci ratio: 9.223253e-03	ci left: 8.811098e-02	ci right 8.892794e-02	k: 164645	n:1860000
ROPN1   1860000 perm   1759 sec   (1057 perm/sec)   p_kst 8.851882e-02   p_cons 9.116667e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.989612e-02	ci left: 8.973946e-03	ci right 9.246829e-03	k: 17035	n:1870000
KS ci ratio: 9.199113e-03	ci left: 8.810236e-02	ci right 8.891709e-02	k: 165512	n:1870000
ROPN1   1870000 perm   1776 sec   (1053 perm/sec)   p_kst 8.850909e-02   p_cons 9.109626e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.982538e-02	ci left: 8.968975e-03	ci right 9.241051e-03	k: 17116	n:1880000
KS ci ratio: 9.172864e-03	ci left: 8.813419e-02	ci right 8.894687e-02	k: 166455	n:1880000
ROPN1   1880000 perm   1793 sec   (1048 perm/sec)   p_kst 8.853989e-02   p_cons 9.104255e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.975689e-02	ci left: 8.963008e-03	ci right 9.234267e-03	k: 17195	n:1890000
KS ci ratio: 9.148907e-03	ci left: 8.812924e-02	ci right 8.893975e-02	k: 167329	n:1890000
ROPN1   1890000 perm   1810 sec   (1044 perm/sec)   p_kst 8.853386e-02   p_cons 9.097884e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.965251e-02	ci left: 8.979046e-03	ci right 9.249822e-03	k: 17316	n:1900000
KS ci ratio: 9.125583e-03	ci left: 8.811647e-02	ci right 8.892478e-02	k: 168188	n:1900000
ROPN1   1900000 perm   1828 sec   (1039 perm/sec)   p_kst 8.852000e-02   p_cons 9.113684e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.958005e-02	ci left: 8.976209e-03	ci right 9.246225e-03	k: 17401	n:1910000
KS ci ratio: 9.100990e-03	ci left: 8.812944e-02	ci right 8.893568e-02	k: 169096	n:1910000
ROPN1   1910000 perm   1845 sec   (1035 perm/sec)   p_kst 8.853194e-02   p_cons 9.110471e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.950131e-02	ci left: 8.977537e-03	ci right 9.246863e-03	k: 17494	n:1920000
KS ci ratio: 9.078176e-03	ci left: 8.811421e-02	ci right 8.891828e-02	k: 169950	n:1920000
ROPN1   1920000 perm   1863 sec   (1031 perm/sec)   p_kst 8.851563e-02   p_cons 9.111458e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.942319e-02	ci left: 8.978853e-03	ci right 9.247493e-03	k: 17587	n:1930000
KS ci ratio: 9.055300e-03	ci left: 8.810328e-02	ci right 8.890521e-02	k: 170812	n:1930000
ROPN1   1930000 perm   1880 sec   (1026 perm/sec)   p_kst 8.850363e-02   p_cons 9.112435e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.934570e-02	ci left: 8.980156e-03	ci right 9.248116e-03	k: 17680	n:1940000
KS ci ratio: 9.032020e-03	ci left: 8.810275e-02	ci right 8.890260e-02	k: 171694	n:1940000
ROPN1   1940000 perm   1898 sec   (1022 perm/sec)   p_kst 8.850206e-02   p_cons 9.113402e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.926299e-02	ci left: 8.985011e-03	ci right 9.252347e-03	k: 17780	n:1950000
KS ci ratio: 9.007343e-03	ci left: 8.813037e-02	ci right 8.892828e-02	k: 172631	n:1950000
ROPN1   1950000 perm   1916 sec   (1018 perm/sec)   p_kst 8.852872e-02   p_cons 9.117949e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.917934e-02	ci left: 8.990830e-03	ci right 9.257562e-03	k: 17882	n:1960000
KS ci ratio: 8.985480e-03	ci left: 8.811088e-02	ci right 8.890666e-02	k: 173476	n:1960000
ROPN1   1960000 perm   1933 sec   (1014 perm/sec)   p_kst 8.850816e-02   p_cons 9.123469e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.911928e-02	ci left: 8.982481e-03	ci right 9.248407e-03	k: 17956	n:1970000
KS ci ratio: 8.962620e-03	ci left: 8.811235e-02	ci right 8.890612e-02	k: 174362	n:1970000
ROPN1   1970000 perm   1951 sec   (1010 perm/sec)   p_kst 8.850863e-02   p_cons 9.114721e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.904659e-02	ci left: 8.982239e-03	ci right 9.247483e-03	k: 18046	n:1980000
KS ci ratio: 8.940884e-03	ci left: 8.809668e-02	ci right 8.888837e-02	k: 175214	n:1980000
ROPN1   1980000 perm   1969 sec   (1006 perm/sec)   p_kst 8.849192e-02   p_cons 9.114141e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.897767e-02	ci left: 8.980004e-03	ci right 9.244543e-03	k: 18132	n:1990000
KS ci ratio: 8.917112e-03	ci left: 8.812078e-02	ci right 8.891057e-02	k: 176145	n:1990000
ROPN1   1990000 perm   1987 sec   (1001 perm/sec)   p_kst 8.851508e-02   p_cons 9.111558e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.890043e-02	ci left: 8.983253e-03	ci right 9.247171e-03	k: 18229	n:2000000
KS ci ratio: 8.895870e-03	ci left: 8.810223e-02	ci right 8.888996e-02	k: 176991	n:2000000
ROPN1   2000000 perm   2005 sec   (997 perm/sec)   p_kst 8.849550e-02   p_cons 9.114500e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.882618e-02	ci left: 8.984989e-03	ci right 9.248269e-03	k: 18323	n:2010000
KS ci ratio: 8.874862e-03	ci left: 8.808238e-02	ci right 8.886806e-02	k: 177834	n:2010000
ROPN1   2010000 perm   2023 sec   (993 perm/sec)   p_kst 8.847463e-02   p_cons 9.115920e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.874936e-02	ci left: 8.988675e-03	ci right 9.251349e-03	k: 18421	n:2020000
KS ci ratio: 8.852806e-03	ci left: 8.808446e-02	ci right 8.886820e-02	k: 178721	n:2020000
ROPN1   2020000 perm   2041 sec   (990 perm/sec)   p_kst 8.847574e-02   p_cons 9.119307e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.867314e-02	ci left: 8.992326e-03	ci right 9.254398e-03	k: 18519	n:2030000
KS ci ratio: 8.830483e-03	ci left: 8.809439e-02	ci right 8.887624e-02	k: 179624	n:2030000
ROPN1   2030000 perm   2060 sec   (986 perm/sec)   p_kst 8.848473e-02   p_cons 9.122660e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.859056e-02	ci left: 9.000322e-03	ci right 9.261859e-03	k: 18626	n:2040000
KS ci ratio: 8.809532e-03	ci left: 8.808222e-02	ci right 8.886209e-02	k: 180482	n:2040000
ROPN1   2040000 perm   2078 sec   (982 perm/sec)   p_kst 8.847157e-02   p_cons 9.130392e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.851944e-02	ci left: 9.001460e-03	ci right 9.262369e-03	k: 18719	n:2050000
KS ci ratio: 8.787506e-03	ci left: 8.809256e-02	ci right 8.887056e-02	k: 181386	n:2050000
ROPN1   2050000 perm   2097 sec   (978 perm/sec)   p_kst 8.848098e-02   p_cons 9.131220e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.845496e-02	ci left: 8.998731e-03	ci right 9.258962e-03	k: 18804	n:2060000
KS ci ratio: 8.767017e-03	ci left: 8.807760e-02	ci right 8.885365e-02	k: 182238	n:2060000
ROPN1   2060000 perm   2116 sec   (974 perm/sec)   p_kst 8.846505e-02   p_cons 9.128155e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.838712e-02	ci left: 8.998428e-03	ci right 9.258020e-03	k: 18894	n:2070000
KS ci ratio: 8.744654e-03	ci left: 8.809992e-02	ci right 8.887418e-02	k: 183167	n:2070000
ROPN1   2070000 perm   2134 sec   (970 perm/sec)   p_kst 8.848647e-02   p_cons 9.127536e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.830998e-02	ci left: 9.004335e-03	ci right 9.263380e-03	k: 18997	n:2080000
KS ci ratio: 8.723370e-03	ci left: 8.810523e-02	ci right 8.887764e-02	k: 184061	n:2080000
ROPN1   2080000 perm   2153 sec   (966 perm/sec)   p_kst 8.849087e-02   p_cons 9.133173e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.825587e-02	ci left: 8.995933e-03	ci right 9.254234e-03	k: 19070	n:2090000
KS ci ratio: 8.702525e-03	ci left: 8.810525e-02	ci right 8.887580e-02	k: 184944	n:2090000
ROPN1   2090000 perm   2172 sec   (962 perm/sec)   p_kst 8.848995e-02   p_cons 9.124402e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.818796e-02	ci left: 8.996596e-03	ci right 9.254284e-03	k: 19162	n:2100000
KS ci ratio: 8.682957e-03	ci left: 8.808435e-02	ci right 8.885298e-02	k: 185783	n:2100000
ROPN1   2100000 perm   2191 sec   (958 perm/sec)   p_kst 8.846810e-02   p_cons 9.124762e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.812495e-02	ci left: 8.994429e-03	ci right 9.251471e-03	k: 19248	n:2110000
KS ci ratio: 8.663622e-03	ci left: 8.806176e-02	ci right 8.882847e-02	k: 186618	n:2110000
ROPN1   2110000 perm   2210 sec   (955 perm/sec)   p_kst 8.844455e-02   p_cons 9.122275e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.805212e-02	ci left: 8.998841e-03	ci right 9.255332e-03	k: 19348	n:2120000
KS ci ratio: 8.644668e-03	ci left: 8.803468e-02	ci right 8.879947e-02	k: 187443	n:2120000
ROPN1   2120000 perm   2229 sec   (951 perm/sec)   p_kst 8.841651e-02   p_cons 9.126415e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.798494e-02	ci left: 8.999949e-03	ci right 9.255848e-03	k: 19441	n:2130000
KS ci ratio: 8.623904e-03	ci left: 8.804393e-02	ci right 8.880696e-02	k: 188345	n:2130000
ROPN1   2130000 perm   2248 sec   (947 perm/sec)   p_kst 8.842488e-02   p_cons 9.127230e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.792184e-02	ci left: 8.998728e-03	ci right 9.254005e-03	k: 19529	n:2140000
KS ci ratio: 8.603039e-03	ci left: 8.805776e-02	ci right 8.881905e-02	k: 189257	n:2140000
ROPN1   2140000 perm   2268 sec   (944 perm/sec)   p_kst 8.843785e-02   p_cons 9.125701e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.785415e-02	ci left: 9.000751e-03	ci right 9.255457e-03	k: 19624	n:2150000
KS ci ratio: 8.582795e-03	ci left: 8.806265e-02	ci right 8.882218e-02	k: 190150	n:2150000
ROPN1   2150000 perm   2287 sec   (940 perm/sec)   p_kst 8.844186e-02   p_cons 9.127442e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.778909e-02	ci left: 9.001377e-03	ci right 9.255497e-03	k: 19716	n:2160000
KS ci ratio: 8.562915e-03	ci left: 8.806333e-02	ci right 8.882110e-02	k: 191034	n:2160000
ROPN1   2160000 perm   2306 sec   (937 perm/sec)   p_kst 8.844167e-02   p_cons 9.127778e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.773720e-02	ci left: 8.993761e-03	ci right 9.247183e-03	k: 19790	n:2170000
KS ci ratio: 8.543343e-03	ci left: 8.806079e-02	ci right 8.881680e-02	k: 191911	n:2170000
ROPN1   2170000 perm   2326 sec   (933 perm/sec)   p_kst 8.843825e-02   p_cons 9.119816e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.766522e-02	ci left: 8.999426e-03	ci right 9.252340e-03	k: 19893	n:2180000
KS ci ratio: 8.523372e-03	ci left: 8.806835e-02	ci right 8.882265e-02	k: 192810	n:2180000
ROPN1   2180000 perm   2346 sec   (929 perm/sec)   p_kst 8.844495e-02   p_cons 9.125229e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.761263e-02	ci left: 8.992795e-03	ci right 9.245035e-03	k: 19969	n:2190000
KS ci ratio: 8.502841e-03	ci left: 8.808906e-02	ci right 8.884171e-02	k: 193738	n:2190000
ROPN1   2190000 perm   2365 sec   (926 perm/sec)   p_kst 8.846484e-02   p_cons 9.118265e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.753470e-02	ci left: 9.002929e-03	ci right 9.254729e-03	k: 20082	n:2200000
KS ci ratio: 8.483486e-03	ci left: 8.809007e-02	ci right 8.884101e-02	k: 194623	n:2200000
ROPN1   2200000 perm   2385 sec   (922 perm/sec)   p_kst 8.846500e-02   p_cons 9.128182e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.747253e-02	ci left: 9.003085e-03	ci right 9.254312e-03	k: 20173	n:2210000
KS ci ratio: 8.464904e-03	ci left: 8.807889e-02	ci right 8.882807e-02	k: 195481	n:2210000
ROPN1   2210000 perm   2405 sec   (919 perm/sec)   p_kst 8.845294e-02   p_cons 9.128054e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.741283e-02	ci left: 9.001898e-03	ci right 9.252538e-03	k: 20261	n:2220000
KS ci ratio: 8.445476e-03	ci left: 8.808624e-02	ci right 8.883376e-02	k: 196380	n:2220000
ROPN1   2220000 perm   2425 sec   (915 perm/sec)   p_kst 8.845946e-02   p_cons 9.126577e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.735283e-02	ci left: 9.001168e-03	ci right 9.251230e-03	k: 20350	n:2230000
KS ci ratio: 8.426181e-03	ci left: 8.809352e-02	ci right 8.883939e-02	k: 197279	n:2230000
ROPN1   2230000 perm   2445 sec   (912 perm/sec)   p_kst 8.846592e-02   p_cons 9.125561e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.727842e-02	ci left: 9.010200e-03	ci right 9.259821e-03	k: 20461	n:2240000
KS ci ratio: 8.406902e-03	ci left: 8.810297e-02	ci right 8.884720e-02	k: 198183	n:2240000
ROPN1   2240000 perm   2465 sec   (909 perm/sec)   p_kst 8.847455e-02   p_cons 9.134375e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.721596e-02	ci left: 9.011648e-03	ci right 9.260729e-03	k: 20555	n:2250000
KS ci ratio: 8.387893e-03	ci left: 8.810968e-02	ci right 8.885227e-02	k: 199081	n:2250000
ROPN1   2250000 perm   2486 sec   (905 perm/sec)   p_kst 8.848044e-02   p_cons 9.135556e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.715526e-02	ci left: 9.012205e-03	ci right 9.260737e-03	k: 20647	n:2260000
KS ci ratio: 8.367360e-03	ci left: 8.814812e-02	ci right 8.888922e-02	k: 200051	n:2260000
ROPN1   2260000 perm   2506 sec   (902 perm/sec)   p_kst 8.851814e-02   p_cons 9.135841e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.710485e-02	ci left: 9.006194e-03	ci right 9.254092e-03	k: 20724	n:2270000
KS ci ratio: 8.349005e-03	ci left: 8.814710e-02	ci right 8.888655e-02	k: 200932	n:2270000
ROPN1   2270000 perm   2526 sec   (898 perm/sec)   p_kst 8.851630e-02   p_cons 9.129515e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.705013e-02	ci left: 9.003285e-03	ci right 9.250595e-03	k: 20808	n:2280000
KS ci ratio: 8.330317e-03	ci left: 8.815484e-02	ci right 8.889270e-02	k: 201833	n:2280000
ROPN1   2280000 perm   2547 sec   (895 perm/sec)   p_kst 8.852325e-02   p_cons 9.126316e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.698662e-02	ci left: 9.006476e-03	ci right 9.253283e-03	k: 20906	n:2290000
KS ci ratio: 8.312091e-03	ci left: 8.815598e-02	ci right 8.889222e-02	k: 202719	n:2290000
ROPN1   2290000 perm   2568 sec   (892 perm/sec)   p_kst 8.852358e-02   p_cons 9.129258e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.692679e-02	ci left: 9.007479e-03	ci right 9.253759e-03	k: 20999	n:2300000
KS ci ratio: 8.294298e-03	ci left: 8.815104e-02	ci right 8.888565e-02	k: 203591	n:2300000
ROPN1   2300000 perm   2589 sec   (888 perm/sec)   p_kst 8.851783e-02   p_cons 9.130000e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.686093e-02	ci left: 9.012775e-03	ci right 9.258588e-03	k: 21102	n:2310000
KS ci ratio: 8.275242e-03	ci left: 8.817293e-02	ci right 8.890603e-02	k: 204525	n:2310000
ROPN1   2310000 perm   2610 sec   (885 perm/sec)   p_kst 8.853896e-02   p_cons 9.135065e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.680320e-02	ci left: 9.012888e-03	ci right 9.258167e-03	k: 21193	n:2320000
KS ci ratio: 8.257904e-03	ci left: 8.816365e-02	ci right 8.889513e-02	k: 205387	n:2320000
ROPN1   2320000 perm   2631 sec   (882 perm/sec)   p_kst 8.852888e-02   p_cons 9.134914e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.673824e-02	ci left: 9.018117e-03	ci right 9.262934e-03	k: 21296	n:2330000
KS ci ratio: 8.239732e-03	ci left: 8.817288e-02	ci right 8.890282e-02	k: 206292	n:2330000
ROPN1   2330000 perm   2652 sec   (879 perm/sec)   p_kst 8.853734e-02   p_cons 9.139914e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.667690e-02	ci left: 9.021179e-03	ci right 9.265509e-03	k: 21394	n:2340000
KS ci ratio: 8.221070e-03	ci left: 8.819397e-02	ci right 8.892243e-02	k: 207225	n:2340000
ROPN1   2340000 perm   2673 sec   (875 perm/sec)   p_kst 8.855769e-02   p_cons 9.142735e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.663286e-02	ci left: 9.012801e-03	ci right 9.256496e-03	k: 21465	n:2350000
KS ci ratio: 8.202708e-03	ci left: 8.821149e-02	ci right 8.893846e-02	k: 208150	n:2350000
ROPN1   2350000 perm   2694 sec   (872 perm/sec)   p_kst 8.857447e-02   p_cons 9.134043e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.658094e-02	ci left: 9.009968e-03	ci right 9.253103e-03	k: 21549	n:2360000
KS ci ratio: 8.186272e-03	ci left: 8.819334e-02	ci right 8.891869e-02	k: 208991	n:2360000
ROPN1   2360000 perm   2715 sec   (869 perm/sec)   p_kst 8.855551e-02   p_cons 9.130932e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.653366e-02	ci left: 9.004225e-03	ci right 9.246766e-03	k: 21626	n:2370000
KS ci ratio: 8.169764e-03	ci left: 8.817871e-02	ci right 8.890247e-02	k: 209840	n:2370000
ROPN1   2370000 perm   2737 sec   (866 perm/sec)   p_kst 8.854008e-02   p_cons 9.124895e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.647925e-02	ci left: 9.003539e-03	ci right 9.245557e-03	k: 21715	n:2380000
KS ci ratio: 8.152252e-03	ci left: 8.818601e-02	ci right 8.890827e-02	k: 210741	n:2380000
ROPN1   2380000 perm   2758 sec   (863 perm/sec)   p_kst 8.854664e-02   p_cons 9.123950e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.642578e-02	ci left: 9.002444e-03	ci right 9.243936e-03	k: 21803	n:2390000
KS ci ratio: 8.136792e-03	ci left: 8.815483e-02	ci right 8.887546e-02	k: 211550	n:2390000
ROPN1   2390000 perm   2779 sec   (860 perm/sec)   p_kst 8.851464e-02   p_cons 9.122594e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.635380e-02	ci left: 9.014190e-03	ci right 9.255330e-03	k: 21922	n:2400000
KS ci ratio: 8.119972e-03	ci left: 8.815260e-02	ci right 8.887172e-02	k: 212428	n:2400000
ROPN1   2400000 perm   2800 sec   (857 perm/sec)   p_kst 8.851167e-02   p_cons 9.134167e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.629627e-02	ci left: 9.016359e-03	ci right 9.257022e-03	k: 22018	n:2410000
KS ci ratio: 8.102632e-03	ci left: 8.816283e-02	ci right 8.888049e-02	k: 213336	n:2410000
ROPN1   2410000 perm   2822 sec   (854 perm/sec)   p_kst 8.852116e-02   p_cons 9.136100e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.623192e-02	ci left: 9.023437e-03	ci right 9.263690e-03	k: 22126	n:2420000
KS ci ratio: 8.085712e-03	ci left: 8.816678e-02	ci right 8.888297e-02	k: 214229	n:2420000
ROPN1   2420000 perm   2844 sec   (851 perm/sec)   p_kst 8.852438e-02   p_cons 9.142975e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.618231e-02	ci left: 9.020644e-03	ci right 9.260363e-03	k: 22210	n:2430000
KS ci ratio: 8.070215e-03	ci left: 8.814441e-02	ci right 8.885904e-02	k: 215058	n:2430000
ROPN1   2430000 perm   2866 sec   (848 perm/sec)   p_kst 8.850123e-02   p_cons 9.139918e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.612471e-02	ci left: 9.023576e-03	ci right 9.262837e-03	k: 22308	n:2440000
KS ci ratio: 8.053682e-03	ci left: 8.814473e-02	ci right 8.885789e-02	k: 215942	n:2440000
ROPN1   2440000 perm   2888 sec   (845 perm/sec)   p_kst 8.850082e-02   p_cons 9.142623e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.607041e-02	ci left: 9.024457e-03	ci right 9.263236e-03	k: 22401	n:2450000
KS ci ratio: 8.036843e-03	ci left: 8.815319e-02	ci right 8.886492e-02	k: 216846	n:2450000
ROPN1   2450000 perm   2911 sec   (842 perm/sec)   p_kst 8.850857e-02   p_cons 9.143265e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.601646e-02	ci left: 9.025331e-03	ci right 9.263632e-03	k: 22494	n:2460000
KS ci ratio: 8.020958e-03	ci left: 8.814455e-02	ci right 8.885479e-02	k: 217708	n:2460000
ROPN1   2460000 perm   2933 sec   (839 perm/sec)   p_kst 8.849919e-02   p_cons 9.143902e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.596052e-02	ci left: 9.027807e-03	ci right 9.265653e-03	k: 22591	n:2470000
KS ci ratio: 8.004403e-03	ci left: 8.815133e-02	ci right 8.886016e-02	k: 218608	n:2470000
ROPN1   2470000 perm   2955 sec   (836 perm/sec)   p_kst 8.850526e-02   p_cons 9.146154e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.590782e-02	ci left: 9.028261e-03	ci right 9.265629e-03	k: 22683	n:2480000
KS ci ratio: 7.987312e-03	ci left: 8.817094e-02	ci right 8.887841e-02	k: 219540	n:2480000
ROPN1   2480000 perm   2977 sec   (833 perm/sec)   p_kst 8.852419e-02   p_cons 9.146371e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.585315e-02	ci left: 9.030308e-03	ci right 9.267221e-03	k: 22779	n:2490000
KS ci ratio: 7.970548e-03	ci left: 8.818599e-02	ci right 8.889208e-02	k: 220461	n:2490000
ROPN1   2490000 perm   3000 sec   (830 perm/sec)   p_kst 8.853855e-02   p_cons 9.148193e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.579996e-02	ci left: 9.031544e-03	ci right 9.267995e-03	k: 22873	n:2500000
KS ci ratio: 7.955052e-03	ci left: 8.817736e-02	ci right 8.888200e-02	k: 221323	n:2500000
ROPN1   2500000 perm   3022 sec   (827 perm/sec)   p_kst 8.852920e-02   p_cons 9.149200e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.574370e-02	ci left: 9.035146e-03	ci right 9.271168e-03	k: 22973	n:2510000
KS ci ratio: 7.938647e-03	ci left: 8.818908e-02	ci right 8.889235e-02	k: 222236	n:2510000
ROPN1   2510000 perm   3045 sec   (824 perm/sec)   p_kst 8.854024e-02   p_cons 9.152590e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.569456e-02	ci left: 9.033988e-03	ci right 9.269523e-03	k: 23061	n:2520000
KS ci ratio: 7.923647e-03	ci left: 8.817416e-02	ci right 8.887599e-02	k: 223082	n:2520000
ROPN1   2520000 perm   3067 sec   (822 perm/sec)   p_kst 8.852460e-02   p_cons 9.151190e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.562559e-02	ci left: 9.046979e-03	ci right 9.282210e-03	k: 23185	n:2530000
KS ci ratio: 7.908655e-03	ci left: 8.816095e-02	ci right 8.886134e-02	k: 223932	n:2530000
ROPN1   2530000 perm   3090 sec   (819 perm/sec)   p_kst 8.851067e-02   p_cons 9.164032e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.557324e-02	ci left: 9.048523e-03	ci right 9.283307e-03	k: 23280	n:2540000
KS ci ratio: 7.892419e-03	ci left: 8.817496e-02	ci right 8.887401e-02	k: 224851	n:2540000
ROPN1   2540000 perm   3113 sec   (816 perm/sec)   p_kst 8.852402e-02   p_cons 9.165354e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.553112e-02	ci left: 9.043041e-03	ci right 9.277291e-03	k: 23357	n:2550000
KS ci ratio: 7.876129e-03	ci left: 8.819199e-02	ci right 8.888973e-02	k: 225778	n:2550000
ROPN1   2550000 perm   3136 sec   (813 perm/sec)   p_kst 8.854039e-02   p_cons 9.159608e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.549251e-02	ci left: 9.035274e-03	ci right 9.268963e-03	k: 23428	n:2560000
KS ci ratio: 7.861329e-03	ci left: 8.818043e-02	ci right 8.887675e-02	k: 226632	n:2560000
ROPN1   2560000 perm   3159 sec   (810 perm/sec)   p_kst 8.852812e-02   p_cons 9.151562e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.544697e-02	ci left: 9.032594e-03	ci right 9.265790e-03	k: 23512	n:2570000
KS ci ratio: 7.845893e-03	ci left: 8.818371e-02	ci right 8.887869e-02	k: 227524	n:2570000
ROPN1   2570000 perm   3182 sec   (808 perm/sec)   p_kst 8.853074e-02   p_cons 9.148638e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.539191e-02	ci left: 9.036868e-03	ci right 9.269662e-03	k: 23614	n:2580000
KS ci ratio: 7.830077e-03	ci left: 8.819665e-02	ci right 8.889032e-02	k: 228441	n:2580000
ROPN1   2580000 perm   3205 sec   (805 perm/sec)   p_kst 8.854302e-02   p_cons 9.152713e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.535014e-02	ci left: 9.031901e-03	ci right 9.264179e-03	k: 23692	n:2590000
KS ci ratio: 7.814431e-03	ci left: 8.820794e-02	ci right 8.890031e-02	k: 229354	n:2590000
ROPN1   2590000 perm   3228 sec   (802 perm/sec)   p_kst 8.855367e-02   p_cons 9.147490e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.529731e-02	ci left: 9.034999e-03	ci right 9.266866e-03	k: 23791	n:2600000
KS ci ratio: 7.799733e-03	ci left: 8.820149e-02	ci right 8.889250e-02	k: 230221	n:2600000
ROPN1   2600000 perm   3252 sec   (800 perm/sec)   p_kst 8.854654e-02   p_cons 9.150385e-03   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.525654e-02	ci left: 9.029697e-03	ci right 9.261049e-03	k: 23868	n:2610000
KS ci ratio: 7.784785e-03	ci left: 8.820197e-02	ci right 8.889166e-02	k: 231106	n:2610000
ROPN1   2610000 perm   3275 sec   (797 perm/sec)   p_kst 8.854636e-02   p_cons 9.144828e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.520588e-02	ci left: 9.031643e-03	ci right 9.262574e-03	k: 23964	n:2620000
KS ci ratio: 7.770181e-03	ci left: 8.819712e-02	ci right 8.888547e-02	k: 231977	n:2620000
ROPN1   2620000 perm   3298 sec   (794 perm/sec)   p_kst 8.854084e-02   p_cons 9.146565e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.514762e-02	ci left: 9.039242e-03	ci right 9.269825e-03	k: 24075	n:2630000
KS ci ratio: 7.755859e-03	ci left: 8.818813e-02	ci right 8.887513e-02	k: 232837	n:2630000
ROPN1   2630000 perm   3322 sec   (792 perm/sec)   p_kst 8.853118e-02   p_cons 9.153992e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.509394e-02	ci left: 9.043773e-03	ci right 9.273972e-03	k: 24178	n:2640000
KS ci ratio: 7.741561e-03	ci left: 8.818034e-02	ci right 8.886601e-02	k: 233700	n:2640000
ROPN1   2640000 perm   3346 sec   (789 perm/sec)   p_kst 8.852273e-02   p_cons 9.158333e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.504217e-02	ci left: 9.047145e-03	ci right 9.276948e-03	k: 24278	n:2650000
KS ci ratio: 7.726529e-03	ci left: 8.818957e-02	ci right 8.887397e-02	k: 234608	n:2650000
ROPN1   2650000 perm   3369 sec   (786 perm/sec)   p_kst 8.853132e-02   p_cons 9.161509e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.499382e-02	ci left: 9.048251e-03	ci right 9.277632e-03	k: 24372	n:2660000
KS ci ratio: 7.712429e-03	ci left: 8.818109e-02	ci right 8.886417e-02	k: 235469	n:2660000
ROPN1   2660000 perm   3393 sec   (784 perm/sec)   p_kst 8.852218e-02   p_cons 9.162406e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.494575e-02	ci left: 9.049348e-03	ci right 9.278310e-03	k: 24466	n:2670000
KS ci ratio: 7.697869e-03	ci left: 8.818388e-02	ci right 8.886570e-02	k: 236360	n:2670000
ROPN1   2670000 perm   3417 sec   (781 perm/sec)   p_kst 8.852434e-02   p_cons 9.163296e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.490512e-02	ci left: 9.045246e-03	ci right 9.273726e-03	k: 24546	n:2680000
KS ci ratio: 7.682593e-03	ci left: 8.820343e-02	ci right 8.888403e-02	k: 237296	n:2680000
ROPN1   2680000 perm   3441 sec   (779 perm/sec)   p_kst 8.854328e-02   p_cons 9.158955e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.486062e-02	ci left: 9.044131e-03	ci right 9.272169e-03	k: 24634	n:2690000
KS ci ratio: 7.668749e-03	ci left: 8.819462e-02	ci right 8.887392e-02	k: 238156	n:2690000
ROPN1   2690000 perm   3465 sec   (776 perm/sec)   p_kst 8.853383e-02   p_cons 9.157621e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.481382e-02	ci left: 9.044865e-03	ci right 9.272486e-03	k: 24727	n:2700000
KS ci ratio: 7.654874e-03	ci left: 8.818810e-02	ci right 8.886612e-02	k: 239022	n:2700000
ROPN1   2700000 perm   3489 sec   (774 perm/sec)   p_kst 8.852667e-02   p_cons 9.158148e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.476728e-02	ci left: 9.045594e-03	ci right 9.272800e-03	k: 24820	n:2710000
KS ci ratio: 7.641668e-03	ci left: 8.816910e-02	ci right 8.884580e-02	k: 239854	n:2710000
ROPN1   2710000 perm   3513 sec   (772 perm/sec)   p_kst 8.850701e-02   p_cons 9.158672e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.472401e-02	ci left: 9.044125e-03	ci right 9.270892e-03	k: 24907	n:2720000
KS ci ratio: 7.627453e-03	ci left: 8.817300e-02	ci right 8.884846e-02	k: 240748	n:2720000
ROPN1   2720000 perm   3536 sec   (769 perm/sec)   p_kst 8.851029e-02   p_cons 9.156985e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.467349e-02	ci left: 9.048129e-03	ci right 9.274526e-03	k: 25009	n:2730000
KS ci ratio: 7.613801e-03	ci left: 8.816663e-02	ci right 8.884083e-02	k: 241614	n:2730000
ROPN1   2730000 perm   3561 sec   (767 perm/sec)   p_kst 8.850330e-02   p_cons 9.160806e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.462972e-02	ci left: 9.047388e-03	ci right 9.273359e-03	k: 25098	n:2740000
KS ci ratio: 7.599328e-03	ci left: 8.817926e-02	ci right 8.885227e-02	k: 242532	n:2740000
ROPN1   2740000 perm   3585 sec   (764 perm/sec)   p_kst 8.851533e-02   p_cons 9.159854e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.458372e-02	ci left: 9.048460e-03	ci right 9.274030e-03	k: 25192	n:2750000
KS ci ratio: 7.585193e-03	ci left: 8.818635e-02	ci right 8.885816e-02	k: 243435	n:2750000
ROPN1   2750000 perm   3610 sec   (762 perm/sec)   p_kst 8.852182e-02   p_cons 9.160727e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.453797e-02	ci left: 9.049525e-03	ci right 9.274696e-03	k: 25286	n:2760000
KS ci ratio: 7.570407e-03	ci left: 8.820894e-02	ci right 8.887960e-02	k: 244381	n:2760000
ROPN1   2760000 perm   3635 sec   (759 perm/sec)   p_kst 8.854384e-02   p_cons 9.161594e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.449540e-02	ci left: 9.048429e-03	ci right 9.273177e-03	k: 25374	n:2770000
KS ci ratio: 7.556754e-03	ci left: 8.820903e-02	ci right 8.887848e-02	k: 245265	n:2770000
ROPN1   2770000 perm   3660 sec   (757 perm/sec)   p_kst 8.854332e-02   p_cons 9.160289e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.445209e-02	ci left: 9.048057e-03	ci right 9.272392e-03	k: 25464	n:2780000
KS ci ratio: 7.542838e-03	ci left: 8.821629e-02	ci right 8.888456e-02	k: 246169	n:2780000
ROPN1   2780000 perm   3685 sec   (754 perm/sec)   p_kst 8.855000e-02   p_cons 9.159712e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.441478e-02	ci left: 9.043412e-03	ci right 9.267286e-03	k: 25542	n:2790000
KS ci ratio: 7.528949e-03	ci left: 8.822459e-02	ci right 8.889168e-02	k: 247076	n:2790000
ROPN1   2790000 perm   3710 sec   (752 perm/sec)   p_kst 8.855771e-02   p_cons 9.154839e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.436853e-02	ci left: 9.045546e-03	ci right 9.269042e-03	k: 25639	n:2800000
KS ci ratio: 7.515469e-03	ci left: 8.822569e-02	ci right 8.889159e-02	k: 247963	n:2800000
ROPN1   2800000 perm   3735 sec   (750 perm/sec)   p_kst 8.855821e-02   p_cons 9.156786e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.433018e-02	ci left: 9.042005e-03	ci right 9.265058e-03	k: 25720	n:2810000
KS ci ratio: 7.502292e-03	ci left: 8.822181e-02	ci right 8.888651e-02	k: 248836	n:2810000
ROPN1   2810000 perm   3760 sec   (747 perm/sec)   p_kst 8.855374e-02   p_cons 9.153025e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.428108e-02	ci left: 9.046597e-03	ci right 9.269306e-03	k: 25824	n:2820000
KS ci ratio: 7.489300e-03	ci left: 8.821548e-02	ci right 8.887898e-02	k: 249702	n:2820000
ROPN1   2820000 perm   3786 sec   (745 perm/sec)   p_kst 8.854681e-02   p_cons 9.157447e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.423889e-02	ci left: 9.046240e-03	ci right 9.268547e-03	k: 25914	n:2830000
KS ci ratio: 7.475949e-03	ci left: 8.821837e-02	ci right 8.888070e-02	k: 250594	n:2830000
ROPN1   2830000 perm   3811 sec   (743 perm/sec)   p_kst 8.854912e-02   p_cons 9.156890e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.419316e-02	ci left: 9.048685e-03	ci right 9.270627e-03	k: 26012	n:2840000
KS ci ratio: 7.462654e-03	ci left: 8.822159e-02	ci right 8.888277e-02	k: 251487	n:2840000
ROPN1   2840000 perm   3836 sec   (740 perm/sec)   p_kst 8.855176e-02   p_cons 9.159155e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.415003e-02	ci left: 9.049370e-03	ci right 9.270928e-03	k: 26105	n:2850000
KS ci ratio: 7.449639e-03	ci left: 8.822024e-02	ci right 8.888024e-02	k: 252367	n:2850000
ROPN1   2850000 perm   3862 sec   (738 perm/sec)   p_kst 8.854982e-02   p_cons 9.159649e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.411316e-02	ci left: 9.045531e-03	ci right 9.266653e-03	k: 26185	n:2860000
KS ci ratio: 7.436354e-03	ci left: 8.822623e-02	ci right 8.888510e-02	k: 253268	n:2860000
ROPN1   2860000 perm   3888 sec   (736 perm/sec)   p_kst 8.855524e-02   p_cons 9.155594e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.407414e-02	ci left: 9.043452e-03	ci right 9.264160e-03	k: 26270	n:2870000
KS ci ratio: 7.422740e-03	ci left: 8.824087e-02	ci right 8.889864e-02	k: 254194	n:2870000
ROPN1   2870000 perm   3914 sec   (733 perm/sec)   p_kst 8.856934e-02   p_cons 9.153310e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.403210e-02	ci left: 9.043804e-03	ci right 9.264129e-03	k: 26362	n:2880000
KS ci ratio: 7.409598e-03	ci left: 8.824675e-02	ci right 8.890339e-02	k: 255095	n:2880000
ROPN1   2880000 perm   3940 sec   (731 perm/sec)   p_kst 8.857465e-02   p_cons 9.153472e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.399302e-02	ci left: 9.042089e-03	ci right 9.262010e-03	k: 26448	n:2890000
KS ci ratio: 7.396938e-03	ci left: 8.824360e-02	ci right 8.889909e-02	k: 255970	n:2890000
ROPN1   2890000 perm   3966 sec   (729 perm/sec)   p_kst 8.857093e-02   p_cons 9.151557e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.395185e-02	ci left: 9.042101e-03	ci right 9.261640e-03	k: 26539	n:2900000
KS ci ratio: 7.384800e-03	ci left: 8.823050e-02	ci right 8.888481e-02	k: 256816	n:2900000
ROPN1   2900000 perm   3991 sec   (727 perm/sec)   p_kst 8.855724e-02   p_cons 9.151379e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.390818e-02	ci left: 9.044162e-03	ci right 9.263345e-03	k: 26636	n:2910000
KS ci ratio: 7.371843e-03	ci left: 8.823669e-02	ci right 8.888990e-02	k: 257718	n:2910000
ROPN1   2910000 perm   4017 sec   (724 perm/sec)   p_kst 8.856289e-02   p_cons 9.153265e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.387466e-02	ci left: 9.038720e-03	ci right 9.257460e-03	k: 26711	n:2920000
KS ci ratio: 7.359172e-03	ci left: 8.823806e-02	ci right 8.889015e-02	k: 258606	n:2920000
ROPN1   2920000 perm   4043 sec   (722 perm/sec)   p_kst 8.856370e-02   p_cons 9.147603e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.383993e-02	ci left: 9.034334e-03	ci right 9.252645e-03	k: 26789	n:2930000
KS ci ratio: 7.346256e-03	ci left: 8.824624e-02	ci right 8.889724e-02	k: 259514	n:2930000
ROPN1   2930000 perm   4069 sec   (720 perm/sec)   p_kst 8.857133e-02   p_cons 9.143003e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.380000e-02	ci left: 9.034035e-03	ci right 9.251968e-03	k: 26879	n:2940000
KS ci ratio: 7.333793e-03	ci left: 8.824587e-02	ci right 8.889576e-02	k: 260397	n:2940000
ROPN1   2940000 perm   4095 sec   (718 perm/sec)   p_kst 8.857041e-02   p_cons 9.142517e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.376115e-02	ci left: 9.033064e-03	ci right 9.250613e-03	k: 26967	n:2950000
KS ci ratio: 7.320872e-03	ci left: 8.825701e-02	ci right 8.890583e-02	k: 261314	n:2950000
ROPN1   2950000 perm   4121 sec   (716 perm/sec)   p_kst 8.858102e-02   p_cons 9.141356e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.371674e-02	ci left: 9.036466e-03	ci right 9.253685e-03	k: 27068	n:2960000
KS ci ratio: 7.308370e-03	ci left: 8.826032e-02	ci right 8.890805e-02	k: 262208	n:2960000
ROPN1   2960000 perm   4148 sec   (714 perm/sec)   p_kst 8.858378e-02   p_cons 9.144595e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.367566e-02	ci left: 9.037503e-03	ci right 9.254365e-03	k: 27162	n:2970000
KS ci ratio: 7.296616e-03	ci left: 8.824848e-02	ci right 8.889508e-02	k: 263057	n:2970000
ROPN1   2970000 perm   4174 sec   (711 perm/sec)   p_kst 8.857138e-02   p_cons 9.145455e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.363654e-02	ci left: 9.037198e-03	ci right 9.253690e-03	k: 27252	n:2980000
KS ci ratio: 7.284086e-03	ci left: 8.825515e-02	ci right 8.890068e-02	k: 263961	n:2980000
ROPN1   2980000 perm   4201 sec   (709 perm/sec)   p_kst 8.857752e-02   p_cons 9.144966e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.359326e-02	ci left: 9.040221e-03	ci right 9.256384e-03	k: 27352	n:2990000
KS ci ratio: 7.272224e-03	ci left: 8.824842e-02	ci right 8.889285e-02	k: 264825	n:2990000
ROPN1   2990000 perm   4227 sec   (707 perm/sec)   p_kst 8.857023e-02   p_cons 9.147826e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.354762e-02	ci left: 9.045212e-03	ci right 9.261070e-03	k: 27458	n:3000000
KS ci ratio: 7.260373e-03	ci left: 8.824273e-02	ci right 8.888606e-02	k: 265692	n:3000000
ROPN1   3000000 perm   4254 sec   (705 perm/sec)   p_kst 8.856400e-02   p_cons 9.152667e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.350913e-02	ci left: 9.044886e-03	ci right 9.260379e-03	k: 27548	n:3010000
KS ci ratio: 7.248477e-03	ci left: 8.823940e-02	ci right 8.888165e-02	k: 266566	n:3010000
ROPN1   3010000 perm   4281 sec   (703 perm/sec)   p_kst 8.856013e-02   p_cons 9.152159e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.347254e-02	ci left: 9.043246e-03	ci right 9.258359e-03	k: 27634	n:3020000
KS ci ratio: 7.237410e-03	ci left: 8.821891e-02	ci right 8.886002e-02	k: 267388	n:3020000
ROPN1   3020000 perm   4307 sec   (701 perm/sec)   p_kst 8.853907e-02   p_cons 9.150331e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.342419e-02	ci left: 9.050804e-03	ci right 9.265648e-03	k: 27748	n:3030000
KS ci ratio: 7.225448e-03	ci left: 8.821964e-02	ci right 8.885970e-02	k: 268274	n:3030000
ROPN1   3030000 perm   4334 sec   (699 perm/sec)   p_kst 8.853927e-02   p_cons 9.157756e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.338715e-02	ci left: 9.049809e-03	ci right 9.264285e-03	k: 27836	n:3040000
KS ci ratio: 7.213634e-03	ci left: 8.821839e-02	ci right 8.885739e-02	k: 269154	n:3040000
ROPN1   3040000 perm   4361 sec   (697 perm/sec)   p_kst 8.853750e-02   p_cons 9.156579e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.335408e-02	ci left: 9.045888e-03	ci right 9.259964e-03	k: 27915	n:3050000
KS ci ratio: 7.201190e-03	ci left: 8.823254e-02	ci right 8.887053e-02	k: 270081	n:3050000
ROPN1   3050000 perm   4388 sec   (695 perm/sec)   p_kst 8.855115e-02   p_cons 9.152459e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.331863e-02	ci left: 9.043942e-03	ci right 9.257642e-03	k: 28000	n:3060000
KS ci ratio: 7.189043e-03	ci left: 8.824138e-02	ci right 8.887835e-02	k: 270992	n:3060000
ROPN1   3060000 perm   4416 sec   (693 perm/sec)   p_kst 8.855948e-02   p_cons 9.150327e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.328460e-02	ci left: 9.041037e-03	ci right 9.254353e-03	k: 28082	n:3070000
KS ci ratio: 7.177188e-03	ci left: 8.824496e-02	ci right 8.888090e-02	k: 271887	n:3070000
ROPN1   3070000 perm   4443 sec   (691 perm/sec)   p_kst 8.856254e-02   p_cons 9.147231e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.324280e-02	ci left: 9.044284e-03	ci right 9.257289e-03	k: 28183	n:3080000
KS ci ratio: 7.165739e-03	ci left: 8.824073e-02	ci right 8.887563e-02	k: 272758	n:3080000
ROPN1   3080000 perm   4470 sec   (689 perm/sec)   p_kst 8.855779e-02   p_cons 9.150325e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.320537e-02	ci left: 9.044294e-03	ci right 9.256951e-03	k: 28274	n:3090000
KS ci ratio: 7.153712e-03	ci left: 8.825075e-02	ci right 8.888465e-02	k: 273673	n:3090000
ROPN1   3090000 perm   4498 sec   (687 perm/sec)   p_kst 8.856731e-02   p_cons 9.150162e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.316977e-02	ci left: 9.043020e-03	ci right 9.255317e-03	k: 28361	n:3100000
KS ci ratio: 7.141960e-03	ci left: 8.825588e-02	ci right 8.888876e-02	k: 274573	n:3100000
ROPN1   3100000 perm   4526 sec   (685 perm/sec)   p_kst 8.857194e-02   p_cons 9.148710e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.313105e-02	ci left: 9.044313e-03	ci right 9.256281e-03	k: 28456	n:3110000
KS ci ratio: 7.130252e-03	ci left: 8.826129e-02	ci right 8.889318e-02	k: 275474	n:3110000
ROPN1   3110000 perm   4553 sec   (683 perm/sec)   p_kst 8.857685e-02   p_cons 9.149839e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.309252e-02	ci left: 9.045598e-03	ci right 9.257238e-03	k: 28551	n:3120000
KS ci ratio: 7.119364e-03	ci left: 8.824939e-02	ci right 8.888022e-02	k: 276321	n:3120000
ROPN1   3120000 perm   4581 sec   (681 perm/sec)   p_kst 8.856442e-02   p_cons 9.150962e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.304932e-02	ci left: 9.050686e-03	ci right 9.262044e-03	k: 28658	n:3130000
KS ci ratio: 7.108680e-03	ci left: 8.823406e-02	ci right 8.886383e-02	k: 277157	n:3130000
ROPN1   3130000 perm   4608 sec   (679 perm/sec)   p_kst 8.854856e-02   p_cons 9.155911e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.300918e-02	ci left: 9.053526e-03	ci right 9.264578e-03	k: 28758	n:3140000
KS ci ratio: 7.097219e-03	ci left: 8.823758e-02	ci right 8.886636e-02	k: 278052	n:3140000
ROPN1   3140000 perm   4636 sec   (677 perm/sec)   p_kst 8.855159e-02   p_cons 9.158599e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.296965e-02	ci left: 9.056033e-03	ci right 9.266775e-03	k: 28857	n:3150000
KS ci ratio: 7.085659e-03	ci left: 8.824457e-02	ci right 8.887237e-02	k: 278958	n:3150000
ROPN1   3150000 perm   4664 sec   (675 perm/sec)   p_kst 8.855810e-02   p_cons 9.160952e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.293712e-02	ci left: 9.053175e-03	ci right 9.263549e-03	k: 28939	n:3160000
KS ci ratio: 7.075085e-03	ci left: 8.823035e-02	ci right 8.885711e-02	k: 279797	n:3160000
ROPN1   3160000 perm   4692 sec   (674 perm/sec)   p_kst 8.854335e-02   p_cons 9.157911e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.289518e-02	ci left: 9.057863e-03	ci right 9.267956e-03	k: 29045	n:3170000
KS ci ratio: 7.064130e-03	ci left: 8.822599e-02	ci right 8.885174e-02	k: 280667	n:3170000
ROPN1   3170000 perm   4720 sec   (672 perm/sec)   p_kst 8.853849e-02   p_cons 9.162461e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.285386e-02	ci left: 9.062210e-03	ci right 9.272019e-03	k: 29150	n:3180000
KS ci ratio: 7.051892e-03	ci left: 8.825210e-02	ci right 8.887695e-02	k: 281634	n:3180000
ROPN1   3180000 perm   4748 sec   (670 perm/sec)   p_kst 8.856415e-02   p_cons 9.166667e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.282576e-02	ci left: 9.056243e-03	ci right 9.265653e-03	k: 29222	n:3190000
KS ci ratio: 7.041072e-03	ci left: 8.824707e-02	ci right 8.887092e-02	k: 282502	n:3190000
ROPN1   3190000 perm   4776 sec   (668 perm/sec)   p_kst 8.855862e-02   p_cons 9.160502e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.278952e-02	ci left: 9.056839e-03	ci right 9.265926e-03	k: 29315	n:3200000
KS ci ratio: 7.030287e-03	ci left: 8.824238e-02	ci right 8.886524e-02	k: 283371	n:3200000
ROPN1   3200000 perm   4804 sec   (666 perm/sec)   p_kst 8.855344e-02   p_cons 9.160938e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.275540e-02	ci left: 9.055883e-03	ci right 9.264630e-03	k: 29403	n:3210000
KS ci ratio: 7.019159e-03	ci left: 8.824674e-02	ci right 8.886864e-02	k: 284269	n:3210000
ROPN1   3210000 perm   4832 sec   (664 perm/sec)   p_kst 8.855732e-02   p_cons 9.159813e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.272455e-02	ci left: 9.052462e-03	ci right 9.260844e-03	k: 29483	n:3220000
KS ci ratio: 7.008084e-03	ci left: 8.825108e-02	ci right 8.887202e-02	k: 285167	n:3220000
ROPN1   3220000 perm   4860 sec   (663 perm/sec)   p_kst 8.856118e-02   p_cons 9.156211e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.268105e-02	ci left: 9.059222e-03	ci right 9.267356e-03	k: 29596	n:3230000
KS ci ratio: 6.996806e-03	ci left: 8.826126e-02	ci right 8.888127e-02	k: 286084	n:3230000
ROPN1   3230000 perm   4889 sec   (661 perm/sec)   p_kst 8.857090e-02   p_cons 9.162848e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.264704e-02	ci left: 9.058575e-03	ci right 9.266378e-03	k: 29685	n:3240000
KS ci ratio: 6.986304e-03	ci left: 8.825474e-02	ci right 8.887377e-02	k: 286947	n:3240000
ROPN1   3240000 perm   4917 sec   (659 perm/sec)   p_kst 8.856389e-02   p_cons 9.162037e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.261547e-02	ci left: 9.056096e-03	ci right 9.263549e-03	k: 29768	n:3250000
KS ci ratio: 6.974944e-03	ci left: 8.826915e-02	ci right 8.888727e-02	k: 287878	n:3250000
ROPN1   3250000 perm   4946 sec   (657 perm/sec)   p_kst 8.857785e-02   p_cons 9.159385e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.258366e-02	ci left: 9.053938e-03	ci right 9.261046e-03	k: 29852	n:3260000
KS ci ratio: 6.964540e-03	ci left: 8.826265e-02	ci right 8.887980e-02	k: 288741	n:3260000
ROPN1   3260000 perm   4975 sec   (655 perm/sec)   p_kst 8.857086e-02   p_cons 9.157055e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.254590e-02	ci left: 9.056659e-03	ci right 9.263478e-03	k: 29952	n:3270000
KS ci ratio: 6.953602e-03	ci left: 8.826962e-02	ci right 8.888585e-02	k: 289648	n:3270000
ROPN1   3270000 perm   5004 sec   (653 perm/sec)   p_kst 8.857737e-02   p_cons 9.159633e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.250531e-02	ci left: 9.061789e-03	ci right 9.268347e-03	k: 30060	n:3280000
KS ci ratio: 6.942925e-03	ci left: 8.827168e-02	ci right 8.888697e-02	k: 290539	n:3280000
ROPN1   3280000 perm   5032 sec   (652 perm/sec)   p_kst 8.857896e-02   p_cons 9.164634e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.247208e-02	ci left: 9.061145e-03	ci right 9.267380e-03	k: 30149	n:3290000
KS ci ratio: 6.932063e-03	ci left: 8.827919e-02	ci right 8.889357e-02	k: 291448	n:3290000
ROPN1   3290000 perm   5062 sec   (650 perm/sec)   p_kst 8.858602e-02   p_cons 9.163830e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.243787e-02	ci left: 9.061409e-03	ci right 9.267332e-03	k: 30241	n:3300000
KS ci ratio: 6.920849e-03	ci left: 8.829604e-02	ci right 8.890953e-02	k: 292388	n:3300000
ROPN1   3300000 perm   5091 sec   (648 perm/sec)   p_kst 8.860242e-02   p_cons 9.163939e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.240493e-02	ci left: 9.060771e-03	ci right 9.266373e-03	k: 30330	n:3310000
KS ci ratio: 6.910477e-03	ci left: 8.829438e-02	ci right 8.890694e-02	k: 293267	n:3310000
ROPN1   3310000 perm   5120 sec   (646 perm/sec)   p_kst 8.860030e-02   p_cons 9.163142e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.237474e-02	ci left: 9.058040e-03	ci right 9.263300e-03	k: 30412	n:3320000
KS ci ratio: 6.899689e-03	ci left: 8.830356e-02	ci right 8.891523e-02	k: 294182	n:3320000
ROPN1   3320000 perm   5149 sec   (645 perm/sec)   p_kst 8.860904e-02   p_cons 9.160241e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.233765e-02	ci left: 9.060999e-03	ci right 9.265982e-03	k: 30513	n:3330000
KS ci ratio: 6.889540e-03	ci left: 8.829890e-02	ci right 8.890963e-02	k: 295051	n:3330000
ROPN1   3330000 perm   5179 sec   (643 perm/sec)   p_kst 8.860390e-02   p_cons 9.163063e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.231104e-02	ci left: 9.055605e-03	ci right 9.260218e-03	k: 30586	n:3340000
KS ci ratio: 6.878939e-03	ci left: 8.830592e-02	ci right 8.891575e-02	k: 295959	n:3340000
ROPN1   3340000 perm   5209 sec   (641 perm/sec)   p_kst 8.861048e-02   p_cons 9.157485e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.227683e-02	ci left: 9.056476e-03	ci right 9.260791e-03	k: 30680	n:3350000
KS ci ratio: 6.869046e-03	ci left: 8.829740e-02	ci right 8.890630e-02	k: 296815	n:3350000
ROPN1   3350000 perm   5238 sec   (640 perm/sec)   p_kst 8.860149e-02   p_cons 9.158209e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.224131e-02	ci left: 9.058527e-03	ci right 9.262558e-03	k: 30778	n:3360000
KS ci ratio: 6.859095e-03	ci left: 8.829131e-02	ci right 8.889928e-02	k: 297679	n:3360000
ROPN1   3360000 perm   5268 sec   (638 perm/sec)   p_kst 8.859494e-02   p_cons 9.160119e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.220561e-02	ci left: 9.060861e-03	ci right 9.264613e-03	k: 30877	n:3370000
KS ci ratio: 6.849150e-03	ci left: 8.828615e-02	ci right 8.889320e-02	k: 298546	n:3370000
ROPN1   3370000 perm   5298 sec   (636 perm/sec)   p_kst 8.858932e-02   p_cons 9.162315e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.217440e-02	ci left: 9.059650e-03	ci right 9.263085e-03	k: 30964	n:3380000
KS ci ratio: 6.839109e-03	ci left: 8.828426e-02	ci right 8.889041e-02	k: 299424	n:3380000
ROPN1   3380000 perm   5328 sec   (634 perm/sec)   p_kst 8.858698e-02   p_cons 9.160947e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.213398e-02	ci left: 9.066075e-03	ci right 9.269278e-03	k: 31077	n:3390000
KS ci ratio: 6.828713e-03	ci left: 8.829182e-02	ci right 8.889709e-02	k: 300334	n:3390000
ROPN1   3390000 perm   5358 sec   (633 perm/sec)   p_kst 8.859410e-02   p_cons 9.167257e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.209915e-02	ci left: 9.068074e-03	ci right 9.270998e-03	k: 31175	n:3400000
KS ci ratio: 6.818700e-03	ci left: 8.829140e-02	ci right 8.889577e-02	k: 301217	n:3400000
ROPN1   3400000 perm   5388 sec   (631 perm/sec)   p_kst 8.859324e-02   p_cons 9.169118e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.206625e-02	ci left: 9.068604e-03	ci right 9.271234e-03	k: 31268	n:3410000
KS ci ratio: 6.808410e-03	ci left: 8.829860e-02	ci right 8.890210e-02	k: 302126	n:3410000
ROPN1   3410000 perm   5418 sec   (629 perm/sec)   p_kst 8.860000e-02   p_cons 9.169501e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.203635e-02	ci left: 9.066804e-03	ci right 9.269116e-03	k: 31353	n:3420000
KS ci ratio: 6.798720e-03	ci left: 8.829261e-02	ci right 8.889522e-02	k: 302990	n:3420000
ROPN1   3420000 perm   5448 sec   (628 perm/sec)   p_kst 8.859357e-02   p_cons 9.167544e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.200726e-02	ci left: 9.064435e-03	ci right 9.266424e-03	k: 31436	n:3430000
KS ci ratio: 6.788752e-03	ci left: 8.829423e-02	ci right 8.889596e-02	k: 303880	n:3430000
ROPN1   3430000 perm   5479 sec   (626 perm/sec)   p_kst 8.859475e-02   p_cons 9.165015e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.197935e-02	ci left: 9.061213e-03	ci right 9.262871e-03	k: 31516	n:3440000
KS ci ratio: 6.778718e-03	ci left: 8.829846e-02	ci right 8.889933e-02	k: 304779	n:3440000
ROPN1   3440000 perm   5509 sec   (624 perm/sec)   p_kst 8.859855e-02   p_cons 9.161628e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.194839e-02	ci left: 9.060604e-03	ci right 9.261960e-03	k: 31605	n:3450000
KS ci ratio: 6.769130e-03	ci left: 8.829311e-02	ci right 8.889309e-02	k: 305645	n:3450000
ROPN1   3450000 perm   5539 sec   (623 perm/sec)   p_kst 8.859275e-02   p_cons 9.160870e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.191443e-02	ci left: 9.062586e-03	ci right 9.263671e-03	k: 31703	n:3460000
KS ci ratio: 6.759025e-03	ci left: 8.830107e-02	ci right 8.890020e-02	k: 306557	n:3460000
ROPN1   3460000 perm   5569 sec   (621 perm/sec)   p_kst 8.860029e-02   p_cons 9.162717e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.188895e-02	ci left: 9.057677e-03	ci right 9.258417e-03	k: 31777	n:3470000
KS ci ratio: 6.749749e-03	ci left: 8.829028e-02	ci right 8.888851e-02	k: 307404	n:3470000
ROPN1   3470000 perm   5600 sec   (620 perm/sec)   p_kst 8.858905e-02   p_cons 9.157637e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.185007e-02	ci left: 9.063943e-03	ci right 9.264461e-03	k: 31890	n:3480000
KS ci ratio: 6.740582e-03	ci left: 8.827783e-02	ci right 8.887516e-02	k: 308245	n:3480000
ROPN1   3480000 perm   5630 sec   (618 perm/sec)   p_kst 8.857615e-02   p_cons 9.163793e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.181655e-02	ci left: 9.065899e-03	ci right 9.266148e-03	k: 31988	n:3490000
KS ci ratio: 6.731955e-03	ci left: 8.825343e-02	ci right 8.884983e-02	k: 309044	n:3490000
ROPN1   3490000 perm   5661 sec   (616 perm/sec)   p_kst 8.855129e-02   p_cons 9.165616e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.179005e-02	ci left: 9.062161e-03	ci right 9.262081e-03	k: 32066	n:3500000
KS ci ratio: 6.722206e-03	ci left: 8.825685e-02	ci right 8.885240e-02	k: 309940	n:3500000
ROPN1   3500000 perm   5692 sec   (615 perm/sec)   p_kst 8.855429e-02   p_cons 9.161714e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.175851e-02	ci left: 9.062694e-03	ci right 9.262333e-03	k: 32159	n:3510000
KS ci ratio: 6.712938e-03	ci left: 8.824972e-02	ci right 8.884441e-02	k: 310799	n:3510000
ROPN1   3510000 perm   5724 sec   (613 perm/sec)   p_kst 8.854672e-02   p_cons 9.162108e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.171930e-02	ci left: 9.069724e-03	ci right 9.269153e-03	k: 32275	n:3520000
KS ci ratio: 6.703425e-03	ci left: 8.824944e-02	ci right 8.884328e-02	k: 311682	n:3520000
ROPN1   3520000 perm   5755 sec   (612 perm/sec)   p_kst 8.854602e-02   p_cons 9.169034e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.168402e-02	ci left: 9.073614e-03	ci right 9.272801e-03	k: 32380	n:3530000
KS ci ratio: 6.693541e-03	ci left: 8.825907e-02	ci right 8.885209e-02	k: 312600	n:3530000
ROPN1   3530000 perm   5785 sec   (610 perm/sec)   p_kst 8.855524e-02   p_cons 9.172805e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.165766e-02	ci left: 9.070178e-03	ci right 9.269044e-03	k: 32459	n:3540000
KS ci ratio: 6.684450e-03	ci left: 8.825059e-02	ci right 8.884274e-02	k: 313454	n:3540000
ROPN1   3540000 perm   5816 sec   (609 perm/sec)   p_kst 8.854633e-02   p_cons 9.169209e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.162904e-02	ci left: 9.068722e-03	ci right 9.267291e-03	k: 32545	n:3550000
KS ci ratio: 6.674393e-03	ci left: 8.826634e-02	ci right 8.885771e-02	k: 314394	n:3550000
ROPN1   3550000 perm   5847 sec   (607 perm/sec)   p_kst 8.856169e-02   p_cons 9.167606e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.160121e-02	ci left: 9.066716e-03	ci right 9.264982e-03	k: 32629	n:3560000
KS ci ratio: 6.665147e-03	ci left: 8.826350e-02	ci right 8.885402e-02	k: 315268	n:3560000
ROPN1   3560000 perm   5878 sec   (606 perm/sec)   p_kst 8.855843e-02   p_cons 9.165449e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.157581e-02	ci left: 9.062771e-03	ci right 9.260715e-03	k: 32706	n:3570000
KS ci ratio: 6.655824e-03	ci left: 8.826347e-02	ci right 8.885317e-02	k: 316152	n:3570000
ROPN1   3570000 perm   5909 sec   (604 perm/sec)   p_kst 8.855798e-02   p_cons 9.161345e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.154785e-02	ci left: 9.061071e-03	ci right 9.258718e-03	k: 32791	n:3580000
KS ci ratio: 6.646356e-03	ci left: 8.826790e-02	ci right 8.885679e-02	k: 317052	n:3580000
ROPN1   3580000 perm   5941 sec   (603 perm/sec)   p_kst 8.856201e-02   p_cons 9.159497e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.151504e-02	ci left: 9.063537e-03	ci right 9.260933e-03	k: 32891	n:3590000
KS ci ratio: 6.636825e-03	ci left: 8.827481e-02	ci right 8.886290e-02	k: 317961	n:3590000
ROPN1   3590000 perm   5973 sec   (601 perm/sec)   p_kst 8.856852e-02   p_cons 9.161838e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.148731e-02	ci left: 9.061844e-03	ci right 9.258946e-03	k: 32976	n:3600000
KS ci ratio: 6.627574e-03	ci left: 8.827586e-02	ci right 8.886313e-02	k: 318849	n:3600000
ROPN1   3600000 perm   6005 sec   (600 perm/sec)   p_kst 8.856917e-02   p_cons 9.160000e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.145511e-02	ci left: 9.064019e-03	ci right 9.260869e-03	k: 33075	n:3610000
KS ci ratio: 6.618396e-03	ci left: 8.827608e-02	ci right 8.886253e-02	k: 319734	n:3610000
ROPN1   3610000 perm   6036 sec   (598 perm/sec)   p_kst 8.856898e-02   p_cons 9.162050e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.142925e-02	ci left: 9.060961e-03	ci right 9.257505e-03	k: 33155	n:3620000
KS ci ratio: 6.608962e-03	ci left: 8.828347e-02	ci right 8.886913e-02	k: 320645	n:3620000
ROPN1   3620000 perm   6069 sec   (597 perm/sec)   p_kst 8.857597e-02   p_cons 9.158840e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.140478e-02	ci left: 9.056824e-03	ci right 9.253051e-03	k: 33231	n:3630000
KS ci ratio: 6.600211e-03	ci left: 8.827513e-02	ci right 8.885996e-02	k: 321499	n:3630000
ROPN1   3630000 perm   6100 sec   (595 perm/sec)   p_kst 8.856722e-02   p_cons 9.154545e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.137909e-02	ci left: 9.053803e-03	ci right 9.249726e-03	k: 33311	n:3640000
KS ci ratio: 6.591078e-03	ci left: 8.827699e-02	ci right 8.886102e-02	k: 322390	n:3640000
ROPN1   3640000 perm   6132 sec   (594 perm/sec)   p_kst 8.856868e-02   p_cons 9.151374e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.134769e-02	ci left: 9.055704e-03	ci right 9.251377e-03	k: 33409	n:3650000
KS ci ratio: 6.582051e-03	ci left: 8.827721e-02	ci right 8.886043e-02	k: 323275	n:3650000
ROPN1   3650000 perm   6165 sec   (592 perm/sec)   p_kst 8.856849e-02   p_cons 9.153151e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.131836e-02	ci left: 9.055964e-03	ci right 9.251371e-03	k: 33501	n:3660000
KS ci ratio: 6.573161e-03	ci left: 8.827496e-02	ci right 8.885738e-02	k: 324151	n:3660000
ROPN1   3660000 perm   6198 sec   (591 perm/sec)   p_kst 8.856585e-02   p_cons 9.153279e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.129043e-02	ci left: 9.055139e-03	ci right 9.250269e-03	k: 33589	n:3670000
KS ci ratio: 6.564351e-03	ci left: 8.827164e-02	ci right 8.885326e-02	k: 325023	n:3670000
ROPN1   3670000 perm   6230 sec   (589 perm/sec)   p_kst 8.856213e-02   p_cons 9.152316e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.126484e-02	ci left: 9.052426e-03	ci right 9.247260e-03	k: 33670	n:3680000
KS ci ratio: 6.555521e-03	ci left: 8.826970e-02	ci right 8.885052e-02	k: 325900	n:3680000
ROPN1   3680000 perm   6263 sec   (588 perm/sec)   p_kst 8.855978e-02   p_cons 9.149457e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.123838e-02	ci left: 9.050537e-03	ci right 9.245085e-03	k: 33754	n:3690000
KS ci ratio: 6.546738e-03	ci left: 8.826749e-02	ci right 8.884752e-02	k: 326776	n:3690000
ROPN1   3690000 perm   6295 sec   (586 perm/sec)   p_kst 8.855718e-02   p_cons 9.147425e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.120728e-02	ci left: 9.052691e-03	ci right 9.246997e-03	k: 33853	n:3700000
KS ci ratio: 6.537858e-03	ci left: 8.826854e-02	ci right 8.884778e-02	k: 327664	n:3700000
ROPN1   3700000 perm   6327 sec   (585 perm/sec)   p_kst 8.855784e-02   p_cons 9.149459e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.118388e-02	ci left: 9.048399e-03	ci right 9.242395e-03	k: 33928	n:3710000
KS ci ratio: 6.528949e-03	ci left: 8.827120e-02	ci right 8.884966e-02	k: 328558	n:3710000
ROPN1   3710000 perm   6360 sec   (583 perm/sec)   p_kst 8.856011e-02   p_cons 9.145013e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.115396e-02	ci left: 9.049745e-03	ci right 9.243493e-03	k: 34024	n:3720000
KS ci ratio: 6.519990e-03	ci left: 8.827599e-02	ci right 8.885369e-02	k: 329460	n:3720000
ROPN1   3720000 perm   6393 sec   (582 perm/sec)   p_kst 8.856452e-02   p_cons 9.146237e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.112667e-02	ci left: 9.048951e-03	ci right 9.242429e-03	k: 34112	n:3730000
KS ci ratio: 6.511262e-03	ci left: 8.827593e-02	ci right 8.885286e-02	k: 330344	n:3730000
ROPN1   3730000 perm   6426 sec   (580 perm/sec)   p_kst 8.856408e-02   p_cons 9.145308e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.109792e-02	ci left: 9.049491e-03	ci right 9.242714e-03	k: 34205	n:3740000
KS ci ratio: 6.502558e-03	ci left: 8.827615e-02	ci right 8.885230e-02	k: 331229	n:3740000
ROPN1   3740000 perm   6459 sec   (579 perm/sec)   p_kst 8.856390e-02   p_cons 9.145722e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.107271e-02	ci left: 9.047110e-03	ci right 9.240049e-03	k: 34287	n:3750000
KS ci ratio: 6.493910e-03	ci left: 8.827583e-02	ci right 8.885121e-02	k: 332112	n:3750000
ROPN1   3750000 perm   6492 sec   (578 perm/sec)   p_kst 8.856320e-02   p_cons 9.143200e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.104511e-02	ci left: 9.046859e-03	ci right 9.239537e-03	k: 34377	n:3760000
KS ci ratio: 6.485169e-03	ci left: 8.827870e-02	ci right 8.885332e-02	k: 333007	n:3760000
ROPN1   3760000 perm   6526 sec   (576 perm/sec)   p_kst 8.856569e-02   p_cons 9.142819e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.101301e-02	ci left: 9.050567e-03	ci right 9.243026e-03	k: 34482	n:3770000
KS ci ratio: 6.476889e-03	ci left: 8.827096e-02	ci right 8.884479e-02	k: 333862	n:3770000
ROPN1   3770000 perm   6559 sec   (575 perm/sec)   p_kst 8.855756e-02   p_cons 9.146419e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.098625e-02	ci left: 9.049782e-03	ci right 9.241976e-03	k: 34570	n:3780000
KS ci ratio: 6.468248e-03	ci left: 8.827304e-02	ci right 8.884611e-02	k: 334754	n:3780000
ROPN1   3780000 perm   6593 sec   (573 perm/sec)   p_kst 8.855926e-02   p_cons 9.145503e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.096266e-02	ci left: 9.046376e-03	ci right 9.238280e-03	k: 34648	n:3790000
KS ci ratio: 6.459631e-03	ci left: 8.827536e-02	ci right 8.884769e-02	k: 335647	n:3790000
ROPN1   3790000 perm   6626 sec   (572 perm/sec)   p_kst 8.856121e-02   p_cons 9.141953e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.093306e-02	ci left: 9.048225e-03	ci right 9.239893e-03	k: 34746	n:3800000
KS ci ratio: 6.451100e-03	ci left: 8.827637e-02	ci right 8.884794e-02	k: 336535	n:3800000
ROPN1   3800000 perm   6660 sec   (571 perm/sec)   p_kst 8.856184e-02   p_cons 9.143684e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.089965e-02	ci left: 9.053458e-03	ci right 9.244927e-03	k: 34857	n:3810000
KS ci ratio: 6.442143e-03	ci left: 8.828890e-02	ci right 8.885976e-02	k: 337467	n:3810000
ROPN1   3810000 perm   6694 sec   (569 perm/sec)   p_kst 8.857402e-02   p_cons 9.148819e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.087423e-02	ci left: 9.051893e-03	ci right 9.243093e-03	k: 34942	n:3820000
KS ci ratio: 6.433619e-03	ci left: 8.829143e-02	ci right 8.886155e-02	k: 338361	n:3820000
ROPN1   3820000 perm   6728 sec   (568 perm/sec)   p_kst 8.857618e-02   p_cons 9.147120e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.085131e-02	ci left: 9.048258e-03	ci right 9.239170e-03	k: 35019	n:3830000
KS ci ratio: 6.424371e-03	ci left: 8.831298e-02	ci right 8.888242e-02	k: 339328	n:3830000
ROPN1   3830000 perm   6762 sec   (566 perm/sec)   p_kst 8.859739e-02   p_cons 9.143342e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.082367e-02	ci left: 9.048787e-03	ci right 9.239454e-03	k: 35112	n:3840000
KS ci ratio: 6.416073e-03	ci left: 8.831154e-02	ci right 8.888023e-02	k: 340207	n:3840000
ROPN1   3840000 perm   6795 sec   (565 perm/sec)   p_kst 8.859557e-02   p_cons 9.143750e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.079168e-02	ci left: 9.053190e-03	ci right 9.243653e-03	k: 35220	n:3850000
KS ci ratio: 6.407291e-03	ci left: 8.832307e-02	ci right 8.889105e-02	k: 341136	n:3850000
ROPN1   3850000 perm   6829 sec   (564 perm/sec)   p_kst 8.860675e-02   p_cons 9.148052e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.076428e-02	ci left: 9.053704e-03	ci right 9.243924e-03	k: 35313	n:3860000
KS ci ratio: 6.398740e-03	ci left: 8.832963e-02	ci right 8.889689e-02	k: 342046	n:3860000
ROPN1   3860000 perm   6863 sec   (562 perm/sec)   p_kst 8.861295e-02   p_cons 9.148446e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.073935e-02	ci left: 9.052160e-03	ci right 9.242116e-03	k: 35398	n:3870000
KS ci ratio: 6.390653e-03	ci left: 8.832532e-02	ci right 8.889183e-02	k: 342914	n:3870000
ROPN1   3870000 perm   6897 sec   (561 perm/sec)   p_kst 8.860827e-02   p_cons 9.146770e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.071510e-02	ci left: 9.050110e-03	ci right 9.239799e-03	k: 35481	n:3880000
KS ci ratio: 6.382342e-03	ci left: 8.832746e-02	ci right 8.889325e-02	k: 343807	n:3880000
ROPN1   3880000 perm   6932 sec   (560 perm/sec)   p_kst 8.861005e-02   p_cons 9.144588e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.068478e-02	ci left: 9.053442e-03	ci right 9.242920e-03	k: 35585	n:3890000
KS ci ratio: 6.373871e-03	ci left: 8.833448e-02	ci right 8.889956e-02	k: 344719	n:3890000
ROPN1   3890000 perm   6966 sec   (558 perm/sec)   p_kst 8.861671e-02   p_cons 9.147815e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.065692e-02	ci left: 9.054716e-03	ci right 9.243962e-03	k: 35681	n:3900000
KS ci ratio: 6.366009e-03	ci left: 8.832686e-02	ci right 8.889119e-02	k: 345574	n:3900000
ROPN1   3900000 perm   7000 sec   (557 perm/sec)   p_kst 8.860872e-02   p_cons 9.148974e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.062859e-02	ci left: 9.056493e-03	ci right 9.245514e-03	k: 35779	n:3910000
KS ci ratio: 6.358327e-03	ci left: 8.831545e-02	ci right 8.887902e-02	k: 346414	n:3910000
ROPN1   3910000 perm   7035 sec   (556 perm/sec)   p_kst 8.859693e-02   p_cons 9.150639e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.060589e-02	ci left: 9.053439e-03	ci right 9.242185e-03	k: 35858	n:3920000
KS ci ratio: 6.350422e-03	ci left: 8.831047e-02	ci right 8.887331e-02	k: 347279	n:3920000
ROPN1   3920000 perm   7070 sec   (554 perm/sec)   p_kst 8.859158e-02   p_cons 9.147449e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.058008e-02	ci left: 9.053185e-03	ci right 9.241687e-03	k: 35948	n:3930000
KS ci ratio: 6.342497e-03	ci left: 8.830678e-02	ci right 8.886889e-02	k: 348149	n:3930000
ROPN1   3930000 perm   7104 sec   (553 perm/sec)   p_kst 8.858753e-02   p_cons 9.147074e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.055639e-02	ci left: 9.051165e-03	ci right 9.239405e-03	k: 36031	n:3940000
KS ci ratio: 6.334870e-03	ci left: 8.829627e-02	ci right 8.885764e-02	k: 348992	n:3940000
ROPN1   3940000 perm   7139 sec   (552 perm/sec)   p_kst 8.857665e-02   p_cons 9.144924e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.052790e-02	ci left: 9.053437e-03	ci right 9.241461e-03	k: 36131	n:3950000
KS ci ratio: 6.327171e-03	ci left: 8.828834e-02	ci right 8.884897e-02	k: 349845	n:3950000
ROPN1   3950000 perm   7173 sec   (551 perm/sec)   p_kst 8.856835e-02   p_cons 9.147089e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.050496e-02	ci left: 9.050924e-03	ci right 9.238683e-03	k: 36212	n:3960000
KS ci ratio: 6.319114e-03	ci left: 8.829029e-02	ci right 8.885021e-02	k: 350737	n:3960000
ROPN1   3960000 perm   7209 sec   (549 perm/sec)   p_kst 8.856995e-02   p_cons 9.144444e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.048095e-02	ci left: 9.049427e-03	ci right 9.236932e-03	k: 36297	n:3970000
KS ci ratio: 6.311148e-03	ci left: 8.829071e-02	ci right 8.884994e-02	k: 351623	n:3970000
ROPN1   3970000 perm   7244 sec   (548 perm/sec)   p_kst 8.857003e-02   p_cons 9.142821e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.045533e-02	ci left: 9.049437e-03	ci right 9.236705e-03	k: 36388	n:3980000
KS ci ratio: 6.302937e-03	ci left: 8.829817e-02	ci right 8.885670e-02	k: 352537	n:3980000
ROPN1   3980000 perm   7279 sec   (547 perm/sec)   p_kst 8.857714e-02   p_cons 9.142714e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.043234e-02	ci left: 9.047203e-03	ci right 9.234212e-03	k: 36470	n:3990000
KS ci ratio: 6.295500e-03	ci left: 8.828656e-02	ci right 8.884436e-02	k: 353375	n:3990000
ROPN1   3990000 perm   7315 sec   (545 perm/sec)   p_kst 8.856516e-02   p_cons 9.140351e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.040775e-02	ci left: 9.046473e-03	ci right 9.233239e-03	k: 36558	n:4000000
KS ci ratio: 6.287097e-03	ci left: 8.830048e-02	ci right 8.885762e-02	k: 354315	n:4000000
ROPN1   4000000 perm   7349 sec   (544 perm/sec)   p_kst 8.857875e-02   p_cons 9.139500e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.038408e-02	ci left: 9.045002e-03	ci right 9.231519e-03	k: 36643	n:4010000
KS ci ratio: 6.279309e-03	ci left: 8.829938e-02	ci right 8.885583e-02	k: 355195	n:4010000
ROPN1   4010000 perm   7384 sec   (543 perm/sec)   p_kst 8.857731e-02   p_cons 9.137905e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.035602e-02	ci left: 9.047498e-03	ci right 9.233807e-03	k: 36744	n:4020000
KS ci ratio: 6.271646e-03	ci left: 8.829581e-02	ci right 8.885155e-02	k: 356065	n:4020000
ROPN1   4020000 perm   7419 sec   (542 perm/sec)   p_kst 8.857338e-02   p_cons 9.140299e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.033031e-02	ci left: 9.048007e-03	ci right 9.234089e-03	k: 36837	n:4030000
KS ci ratio: 6.264050e-03	ci left: 8.829126e-02	ci right 8.884630e-02	k: 356931	n:4030000
ROPN1   4030000 perm   7454 sec   (541 perm/sec)   p_kst 8.856849e-02   p_cons 9.140695e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.030802e-02	ci left: 9.045559e-03	ci right 9.231383e-03	k: 36918	n:4040000
KS ci ratio: 6.256434e-03	ci left: 8.828798e-02	ci right 8.884232e-02	k: 357802	n:4040000
ROPN1   4040000 perm   7490 sec   (539 perm/sec)   p_kst 8.856485e-02   p_cons 9.138119e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.028774e-02	ci left: 9.041403e-03	ci right 9.226954e-03	k: 36992	n:4050000
KS ci ratio: 6.248578e-03	ci left: 8.829161e-02	ci right 8.884527e-02	k: 358701	n:4050000
ROPN1   4050000 perm   7525 sec   (538 perm/sec)   p_kst 8.856815e-02   p_cons 9.133827e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.025842e-02	ci left: 9.045355e-03	ci right 9.230716e-03	k: 37099	n:4060000
KS ci ratio: 6.240637e-03	ci left: 8.829818e-02	ci right 8.885118e-02	k: 359612	n:4060000
ROPN1   4060000 perm   7561 sec   (537 perm/sec)   p_kst 8.857438e-02   p_cons 9.137685e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.023500e-02	ci left: 9.044153e-03	ci right 9.229273e-03	k: 37185	n:4070000
KS ci ratio: 6.232991e-03	ci left: 8.829785e-02	ci right 8.885016e-02	k: 360495	n:4070000
ROPN1   4070000 perm   7596 sec   (536 perm/sec)   p_kst 8.857371e-02   p_cons 9.136364e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.021138e-02	ci left: 9.043202e-03	ci right 9.228084e-03	k: 37272	n:4080000
KS ci ratio: 6.225034e-03	ci left: 8.830632e-02	ci right 8.885799e-02	k: 361414	n:4080000
ROPN1   4080000 perm   7632 sec   (535 perm/sec)   p_kst 8.858186e-02   p_cons 9.135294e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.018866e-02	ci left: 9.041526e-03	ci right 9.226163e-03	k: 37356	n:4090000
KS ci ratio: 6.217417e-03	ci left: 8.830671e-02	ci right 8.885769e-02	k: 362300	n:4090000
ROPN1   4090000 perm   7667 sec   (533 perm/sec)   p_kst 8.858191e-02   p_cons 9.133496e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.016548e-02	ci left: 9.040343e-03	ci right 9.224742e-03	k: 37442	n:4100000
KS ci ratio: 6.210176e-03	ci left: 8.829807e-02	ci right 8.884836e-02	k: 363149	n:4100000
ROPN1   4100000 perm   7703 sec   (532 perm/sec)   p_kst 8.857293e-02   p_cons 9.132195e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.014183e-02	ci left: 9.039650e-03	ci right 9.223816e-03	k: 37530	n:4110000
KS ci ratio: 6.202287e-03	ci left: 8.830698e-02	ci right 8.885662e-02	k: 364070	n:4110000
ROPN1   4110000 perm   7738 sec   (531 perm/sec)   p_kst 8.858151e-02   p_cons 9.131387e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.011611e-02	ci left: 9.040893e-03	ci right 9.224846e-03	k: 37626	n:4120000
KS ci ratio: 6.195061e-03	ci left: 8.829936e-02	ci right 8.884831e-02	k: 364923	n:4120000
ROPN1   4120000 perm   7774 sec   (530 perm/sec)   p_kst 8.857354e-02   p_cons 9.132524e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.009156e-02	ci left: 9.041166e-03	ci right 9.224898e-03	k: 37718	n:4130000
KS ci ratio: 6.187600e-03	ci left: 8.829854e-02	ci right 8.884683e-02	k: 365804	n:4130000
ROPN1   4130000 perm   7810 sec   (529 perm/sec)   p_kst 8.857240e-02   p_cons 9.132688e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.006978e-02	ci left: 9.039035e-03	ci right 9.222522e-03	k: 37800	n:4140000
KS ci ratio: 6.180111e-03	ci left: 8.829918e-02	ci right 8.884680e-02	k: 366691	n:4140000
ROPN1   4140000 perm   7846 sec   (528 perm/sec)   p_kst 8.857271e-02   p_cons 9.130435e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.004620e-02	ci left: 9.038592e-03	ci right 9.221853e-03	k: 37889	n:4150000
KS ci ratio: 6.172520e-03	ci left: 8.830319e-02	ci right 8.885016e-02	k: 367592	n:4150000
ROPN1   4150000 perm   7883 sec   (526 perm/sec)   p_kst 8.857639e-02   p_cons 9.129880e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.002084e-02	ci left: 9.039826e-03	ci right 9.222877e-03	k: 37985	n:4160000
KS ci ratio: 6.164773e-03	ci left: 8.831197e-02	ci right 8.885831e-02	k: 368513	n:4160000
ROPN1   4160000 perm   7920 sec   (525 perm/sec)   p_kst 8.858486e-02   p_cons 9.131010e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.000167e-02	ci left: 9.035566e-03	ci right 9.218354e-03	k: 38058	n:4170000
KS ci ratio: 6.157513e-03	ci left: 8.830875e-02	ci right 8.885442e-02	k: 369384	n:4170000
ROPN1   4170000 perm   7956 sec   (524 perm/sec)   p_kst 8.858129e-02   p_cons 9.126619e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 1.997543e-02	ci left: 9.037754e-03	ci right 9.220343e-03	k: 38158	n:4180000
KS ci ratio: 6.150004e-03	ci left: 8.831270e-02	ci right 8.885773e-02	k: 370285	n:4180000
ROPN1   4180000 perm   7993 sec   (523 perm/sec)   p_kst 8.858493e-02   p_cons 9.128708e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 1.994718e-02	ci left: 9.041832e-03	ci right 9.224242e-03	k: 38266	n:4190000
KS ci ratio: 6.142805e-03	ci left: 8.830925e-02	ci right 8.885361e-02	k: 371155	n:4190000
ROPN1   4190000 perm   8029 sec   (522 perm/sec)   p_kst 8.858115e-02   p_cons 9.132697e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 1.992429e-02	ci left: 9.041151e-03	ci right 9.223336e-03	k: 38354	n:4200000
KS ci ratio: 6.135577e-03	ci left: 8.830724e-02	ci right 8.885095e-02	k: 372031	n:4200000
ROPN1   4200000 perm   8065 sec   (521 perm/sec)   p_kst 8.857881e-02   p_cons 9.131905e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 1.990122e-02	ci left: 9.040711e-03	ci right 9.222673e-03	k: 38443	n:4210000
KS ci ratio: 6.128139e-03	ci left: 8.831141e-02	ci right 8.885448e-02	k: 372933	n:4210000
ROPN1   4210000 perm   8102 sec   (520 perm/sec)   p_kst 8.858266e-02   p_cons 9.131354e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 1.987615e-02	ci left: 9.042159e-03	ci right 9.223918e-03	k: 38540	n:4220000
KS ci ratio: 6.121025e-03	ci left: 8.830775e-02	ci right 8.885017e-02	k: 373802	n:4220000
ROPN1   4220000 perm   8139 sec   (519 perm/sec)   p_kst 8.857867e-02   p_cons 9.132701e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 1.985428e-02	ci left: 9.040777e-03	ci right 9.222307e-03	k: 38625	n:4230000
KS ci ratio: 6.114034e-03	ci left: 8.830151e-02	ci right 8.884327e-02	k: 374660	n:4230000
ROPN1   4230000 perm   8175 sec   (517 perm/sec)   p_kst 8.857210e-02   p_cons 9.131206e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 1.982990e-02	ci left: 9.041749e-03	ci right 9.223073e-03	k: 38720	n:4240000
KS ci ratio: 6.106818e-03	ci left: 8.830189e-02	ci right 8.884301e-02	k: 375546	n:4240000
ROPN1   4240000 perm   8212 sec   (516 perm/sec)   p_kst 8.857217e-02   p_cons 9.132075e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 1.980741e-02	ci left: 9.041078e-03	ci right 9.222180e-03	k: 38808	n:4250000
KS ci ratio: 6.099742e-03	ci left: 8.829922e-02	ci right 8.883969e-02	k: 376419	n:4250000
ROPN1   4250000 perm   8250 sec   (515 perm/sec)   p_kst 8.856918e-02   p_cons 9.131294e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 1.978911e-02	ci left: 9.036672e-03	ci right 9.217517e-03	k: 38880	n:4260000
KS ci ratio: 6.092310e-03	ci left: 8.830664e-02	ci right 8.884650e-02	k: 377335	n:4260000
ROPN1   4260000 perm   8287 sec   (514 perm/sec)   p_kst 8.857629e-02   p_cons 9.126761e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 1.976625e-02	ci left: 9.036482e-03	ci right 9.217112e-03	k: 38970	n:4270000
KS ci ratio: 6.085073e-03	ci left: 8.830958e-02	ci right 8.884882e-02	k: 378232	n:4270000
ROPN1   4270000 perm   8324 sec   (513 perm/sec)   p_kst 8.857892e-02   p_cons 9.126464e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 1.974653e-02	ci left: 9.033503e-03	ci right 9.213891e-03	k: 39048	n:4280000
KS ci ratio: 6.078046e-03	ci left: 8.830762e-02	ci right 8.884621e-02	k: 379108	n:4280000
ROPN1   4280000 perm   8363 sec   (512 perm/sec)   p_kst 8.857664e-02   p_cons 9.123364e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 1.972407e-02	ci left: 9.033089e-03	ci right 9.213262e-03	k: 39137	n:4290000
KS ci ratio: 6.071359e-03	ci left: 8.829728e-02	ci right 8.883522e-02	k: 379948	n:4290000
ROPN1   4290000 perm   8400 sec   (511 perm/sec)   p_kst 8.856597e-02   p_cons 9.122844e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 1.970118e-02	ci left: 9.033141e-03	ci right 9.213103e-03	k: 39228	n:4300000
KS ci ratio: 6.064039e-03	ci left: 8.830440e-02	ci right 8.884173e-02	k: 380863	n:4300000
ROPN1   4300000 perm   8438 sec   (510 perm/sec)   p_kst 8.857279e-02   p_cons 9.122791e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 1.967787e-02	ci left: 9.033654e-03	ci right 9.213410e-03	k: 39321	n:4310000
KS ci ratio: 6.056746e-03	ci left: 8.831150e-02	ci right 8.884822e-02	k: 381778	n:4310000
ROPN1   4310000 perm   8475 sec   (509 perm/sec)   p_kst 8.857958e-02   p_cons 9.123202e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 1.965740e-02	ci left: 9.031630e-03	ci right 9.211158e-03	k: 39403	n:4320000
KS ci ratio: 6.049773e-03	ci left: 8.831070e-02	ci right 8.884680e-02	k: 382659	n:4320000
ROPN1   4320000 perm   8514 sec   (507 perm/sec)   p_kst 8.857847e-02   p_cons 9.121065e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 1.963800e-02	ci left: 9.028697e-03	ci right 9.207988e-03	k: 39481	n:4330000
KS ci ratio: 6.042876e-03	ci left: 8.830852e-02	ci right 8.884399e-02	k: 383534	n:4330000
ROPN1   4330000 perm   8552 sec   (506 perm/sec)   p_kst 8.857598e-02   p_cons 9.118014e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 1.961842e-02	ci left: 9.026007e-03	ci right 9.205063e-03	k: 39560	n:4340000
KS ci ratio: 6.035728e-03	ci left: 8.831371e-02	ci right 8.884859e-02	k: 384441	n:4340000
ROPN1   4340000 perm   8589 sec   (505 perm/sec)   p_kst 8.858088e-02   p_cons 9.115207e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 1.959913e-02	ci left: 9.023101e-03	ci right 9.201921e-03	k: 39638	n:4350000
KS ci ratio: 6.028707e-03	ci left: 8.831613e-02	ci right 8.885039e-02	k: 385336	n:4350000
ROPN1   4350000 perm   8626 sec   (504 perm/sec)   p_kst 8.858299e-02   p_cons 9.112184e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 1.957842e-02	ci left: 9.021577e-03	ci right 9.200176e-03	k: 39722	n:4360000
KS ci ratio: 6.021908e-03	ci left: 8.831327e-02	ci right 8.884691e-02	k: 386208	n:4360000
ROPN1   4360000 perm   8664 sec   (503 perm/sec)   p_kst 8.857982e-02   p_cons 9.110550e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 1.955776e-02	ci left: 9.020061e-03	ci right 9.198440e-03	k: 39806	n:4370000
KS ci ratio: 6.015165e-03	ci left: 8.830951e-02	ci right 8.884253e-02	k: 387076	n:4370000
ROPN1   4370000 perm   8702 sec   (502 perm/sec)   p_kst 8.857574e-02   p_cons 9.108924e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 1.953495e-02	ci left: 9.020596e-03	ci right 9.198775e-03	k: 39899	n:4380000
KS ci ratio: 6.008004e-03	ci left: 8.831762e-02	ci right 8.885005e-02	k: 387996	n:4380000
ROPN1   4380000 perm   8740 sec   (501 perm/sec)   p_kst 8.858356e-02   p_cons 9.109361e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 1.951370e-02	ci left: 9.019769e-03	ci right 9.197736e-03	k: 39986	n:4390000
KS ci ratio: 6.001139e-03	ci left: 8.831841e-02	ci right 8.885024e-02	k: 388884	n:4390000
ROPN1   4390000 perm   8783 sec   (500 perm/sec)   p_kst 8.858405e-02   p_cons 9.108428e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 1.949399e-02	ci left: 9.017589e-03	ci right 9.195331e-03	k: 40067	n:4400000
KS ci ratio: 5.994365e-03	ci left: 8.831739e-02	ci right 8.884861e-02	k: 389764	n:4400000
ROPN1   4400000 perm   8821 sec   (499 perm/sec)   p_kst 8.858273e-02   p_cons 9.106136e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 1.947018e-02	ci left: 9.019255e-03	ci right 9.196810e-03	k: 40165	n:4410000
KS ci ratio: 5.987538e-03	ci left: 8.831841e-02	ci right 8.884902e-02	k: 390653	n:4410000
ROPN1   4410000 perm   8859 sec   (498 perm/sec)   p_kst 8.858345e-02   p_cons 9.107710e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 1.945084e-02	ci left: 9.016861e-03	ci right 9.194190e-03	k: 40245	n:4420000
KS ci ratio: 5.981095e-03	ci left: 8.830971e-02	ci right 8.883970e-02	k: 391499	n:4420000
ROPN1   4420000 perm   8898 sec   (497 perm/sec)   p_kst 8.857443e-02   p_cons 9.105204e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 1.942743e-02	ci left: 9.018296e-03	ci right 9.195439e-03	k: 40342	n:4430000
KS ci ratio: 5.974263e-03	ci left: 8.831209e-02	ci right 8.884149e-02	k: 392394	n:4430000
ROPN1   4430000 perm   8937 sec   (496 perm/sec)   p_kst 8.857652e-02   p_cons 9.106546e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 1.940192e-02	ci left: 9.021743e-03	ci right 9.198718e-03	k: 40448	n:4440000
KS ci ratio: 5.967421e-03	ci left: 8.831537e-02	ci right 8.884418e-02	k: 393293	n:4440000
ROPN1   4440000 perm   8976 sec   (495 perm/sec)   p_kst 8.857950e-02   p_cons 9.109910e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 1.937990e-02	ci left: 9.022043e-03	ci right 9.198821e-03	k: 40540	n:4450000
KS ci ratio: 5.960529e-03	ci left: 8.832065e-02	ci right 8.884888e-02	k: 394201	n:4450000
ROPN1   4450000 perm   9015 sec   (494 perm/sec)   p_kst 8.858449e-02   p_cons 9.110112e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 1.935794e-02	ci left: 9.022343e-03	ci right 9.198923e-03	k: 40632	n:4460000
KS ci ratio: 5.953568e-03	ci left: 8.832837e-02	ci right 8.885602e-02	k: 395120	n:4460000
ROPN1   4460000 perm   9055 sec   (493 perm/sec)   p_kst 8.859193e-02   p_cons 9.110314e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 1.933510e-02	ci left: 9.023531e-03	ci right 9.199924e-03	k: 40728	n:4470000
KS ci ratio: 5.946781e-03	ci left: 8.833203e-02	ci right 8.885910e-02	k: 396021	n:4470000
ROPN1   4470000 perm   9094 sec   (492 perm/sec)   p_kst 8.859530e-02   p_cons 9.111409e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 1.931664e-02	ci left: 9.020716e-03	ci right 9.196884e-03	k: 40806	n:4480000
KS ci ratio: 5.940444e-03	ci left: 8.832409e-02	ci right 8.885055e-02	k: 396870	n:4480000
ROPN1   4480000 perm   9133 sec   (491 perm/sec)   p_kst 8.858705e-02   p_cons 9.108482e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 1.929062e-02	ci left: 9.025006e-03	ci right 9.201018e-03	k: 40916	n:4490000
KS ci ratio: 5.933717e-03	ci left: 8.832730e-02	ci right 8.885318e-02	k: 397769	n:4490000
ROPN1   4490000 perm   9173 sec   (489 perm/sec)   p_kst 8.858998e-02   p_cons 9.112695e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 1.926992e-02	ci left: 9.024412e-03	ci right 9.200221e-03	k: 41004	n:4500000
KS ci ratio: 5.926973e-03	ci left: 8.833161e-02	ci right 8.885692e-02	k: 398673	n:4500000
ROPN1   4500000 perm   9213 sec   (488 perm/sec)   p_kst 8.859400e-02   p_cons 9.112000e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 1.924668e-02	ci left: 9.026247e-03	ci right 9.201878e-03	k: 41103	n:4510000
KS ci ratio: 5.920227e-03	ci left: 8.833657e-02	ci right 8.886130e-02	k: 399580	n:4510000
ROPN1   4510000 perm   9252 sec   (487 perm/sec)   p_kst 8.859867e-02   p_cons 9.113747e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 1.922541e-02	ci left: 9.026314e-03	ci right 9.201750e-03	k: 41194	n:4520000
KS ci ratio: 5.913464e-03	ci left: 8.834260e-02	ci right 8.886677e-02	k: 400492	n:4520000
ROPN1   4520000 perm   9292 sec   (486 perm/sec)   p_kst 8.860442e-02   p_cons 9.113717e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 1.920468e-02	ci left: 9.025941e-03	ci right 9.201178e-03	k: 41283	n:4530000
KS ci ratio: 5.906764e-03	ci left: 8.834751e-02	ci right 8.887112e-02	k: 401399	n:4530000
ROPN1   4530000 perm   9332 sec   (485 perm/sec)   p_kst 8.860905e-02   p_cons 9.113245e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 1.918566e-02	ci left: 9.024035e-03	ci right 9.199059e-03	k: 41365	n:4540000
KS ci ratio: 5.899902e-03	ci left: 8.835746e-02	ci right 8.888051e-02	k: 402329	n:4540000
ROPN1   4540000 perm   9371 sec   (484 perm/sec)   p_kst 8.861872e-02   p_cons 9.111233e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 1.916272e-02	ci left: 9.025856e-03	ci right 9.200704e-03	k: 41464	n:4550000
KS ci ratio: 5.893649e-03	ci left: 8.835134e-02	ci right 8.887380e-02	k: 403186	n:4550000
ROPN1   4550000 perm   9412 sec   (483 perm/sec)   p_kst 8.861231e-02   p_cons 9.112967e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.914498e-02	ci left: 9.022867e-03	ci right 9.197494e-03	k: 41541	n:4560000
KS ci ratio: 5.887105e-03	ci left: 8.835379e-02	ci right 8.887568e-02	k: 404082	n:4560000
ROPN1   4560000 perm   9452 sec   (482 perm/sec)   p_kst 8.861447e-02   p_cons 9.109868e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.912081e-02	ci left: 9.025989e-03	ci right 9.200454e-03	k: 41646	n:4570000
KS ci ratio: 5.880390e-03	ci left: 8.836147e-02	ci right 8.888281e-02	k: 405002	n:4570000
ROPN1   4570000 perm   9491 sec   (481 perm/sec)   p_kst 8.862188e-02   p_cons 9.112910e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.910157e-02	ci left: 9.024535e-03	ci right 9.198794e-03	k: 41730	n:4580000
KS ci ratio: 5.873778e-03	ci left: 8.836694e-02	ci right 8.888773e-02	k: 405912	n:4580000
ROPN1   4580000 perm   9532 sec   (481 perm/sec)   p_kst 8.862707e-02   p_cons 9.111354e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.908308e-02	ci left: 9.022436e-03	ci right 9.196484e-03	k: 41811	n:4590000
KS ci ratio: 5.866975e-03	ci left: 8.837826e-02	ci right 8.889851e-02	k: 406849	n:4590000
ROPN1   4590000 perm   9571 sec   (480 perm/sec)   p_kst 8.863813e-02   p_cons 9.109150e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.905959e-02	ci left: 9.025107e-03	ci right 9.198990e-03	k: 41914	n:4600000
KS ci ratio: 5.860834e-03	ci left: 8.837195e-02	ci right 8.889161e-02	k: 407705	n:4600000
ROPN1   4600000 perm   9612 sec   (479 perm/sec)   p_kst 8.863152e-02   p_cons 9.111739e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.904214e-02	ci left: 9.022153e-03	ci right 9.195818e-03	k: 41991	n:4610000
KS ci ratio: 5.854288e-03	ci left: 8.837736e-02	ci right 8.889647e-02	k: 408615	n:4610000
ROPN1   4610000 perm   9652 sec   (478 perm/sec)   p_kst 8.863666e-02   p_cons 9.108677e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.902245e-02	ci left: 9.021366e-03	ci right 9.194834e-03	k: 42078	n:4620000
KS ci ratio: 5.847842e-03	ci left: 8.838059e-02	ci right 8.889915e-02	k: 409515	n:4620000
ROPN1   4620000 perm   9692 sec   (477 perm/sec)   p_kst 8.863961e-02   p_cons 9.107792e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.900328e-02	ci left: 9.020153e-03	ci right 9.193421e-03	k: 42163	n:4630000
KS ci ratio: 5.841565e-03	ci left: 8.837970e-02	ci right 8.889770e-02	k: 410396	n:4630000
ROPN1   4630000 perm   9733 sec   (476 perm/sec)   p_kst 8.863844e-02   p_cons 9.106479e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.898417e-02	ci left: 9.018945e-03	ci right 9.192014e-03	k: 42248	n:4640000
KS ci ratio: 5.835488e-03	ci left: 8.837387e-02	ci right 8.889129e-02	k: 411254	n:4640000
ROPN1   4640000 perm   9773 sec   (475 perm/sec)   p_kst 8.863233e-02   p_cons 9.105172e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.896375e-02	ci left: 9.019026e-03	ci right 9.191909e-03	k: 42339	n:4650000
KS ci ratio: 5.828926e-03	ci left: 8.838203e-02	ci right 8.889891e-02	k: 412177	n:4650000
ROPN1   4650000 perm   9814 sec   (474 perm/sec)   p_kst 8.864022e-02   p_cons 9.105161e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.894138e-02	ci left: 9.021030e-03	ci right 9.193744e-03	k: 42439	n:4660000
KS ci ratio: 5.822485e-03	ci left: 8.838736e-02	ci right 8.890371e-02	k: 413087	n:4660000
ROPN1   4660000 perm   9855 sec   (473 perm/sec)   p_kst 8.864528e-02   p_cons 9.107082e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.892021e-02	ci left: 9.021959e-03	ci right 9.194496e-03	k: 42534	n:4670000
KS ci ratio: 5.816283e-03	ci left: 8.838669e-02	ci right 8.890247e-02	k: 413969	n:4670000
ROPN1   4670000 perm   9896 sec   (472 perm/sec)   p_kst 8.864433e-02   p_cons 9.107923e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.890067e-02	ci left: 9.021396e-03	ci right 9.193742e-03	k: 42622	n:4680000
KS ci ratio: 5.810238e-03	ci left: 8.838217e-02	ci right 8.889740e-02	k: 414833	n:4680000
ROPN1   4680000 perm   9936 sec   (471 perm/sec)   p_kst 8.863953e-02   p_cons 9.107265e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.887830e-02	ci left: 9.023594e-03	ci right 9.195776e-03	k: 42723	n:4690000
KS ci ratio: 5.804396e-03	ci left: 8.837257e-02	ci right 8.888721e-02	k: 415673	n:4690000
ROPN1   4690000 perm   9977 sec   (470 perm/sec)   p_kst 8.862964e-02   p_cons 9.109382e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.885889e-02	ci left: 9.023030e-03	ci right 9.195023e-03	k: 42811	n:4700000
KS ci ratio: 5.798426e-03	ci left: 8.836704e-02	ci right 8.888112e-02	k: 416532	n:4700000
ROPN1   4700000 perm   10018 sec   (469 perm/sec)   p_kst 8.862383e-02   p_cons 9.108723e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.883755e-02	ci left: 9.024370e-03	ci right 9.196192e-03	k: 42908	n:4710000
KS ci ratio: 5.792223e-03	ci left: 8.836854e-02	ci right 8.888208e-02	k: 417424	n:4710000
ROPN1   4710000 perm   10060 sec   (468 perm/sec)   p_kst 8.862505e-02   p_cons 9.109979e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.881783e-02	ci left: 9.024229e-03	ci right 9.195866e-03	k: 42998	n:4720000
KS ci ratio: 5.785676e-03	ci left: 8.838018e-02	ci right 8.889321e-02	k: 418364	n:4720000
ROPN1   4720000 perm   10101 sec   (467 perm/sec)   p_kst 8.863644e-02   p_cons 9.109746e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.879663e-02	ci left: 9.025561e-03	ci right 9.197028e-03	k: 43095	n:4730000
KS ci ratio: 5.779613e-03	ci left: 8.837890e-02	ci right 8.889137e-02	k: 419243	n:4730000
ROPN1   4730000 perm   10143 sec   (466 perm/sec)   p_kst 8.863488e-02   p_cons 9.110994e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.877726e-02	ci left: 9.025208e-03	ci right 9.196490e-03	k: 43184	n:4740000
KS ci ratio: 5.773486e-03	ci left: 8.837994e-02	ci right 8.889187e-02	k: 420133	n:4740000
ROPN1   4740000 perm   10184 sec   (465 perm/sec)   p_kst 8.863565e-02   p_cons 9.110549e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.875882e-02	ci left: 9.024018e-03	ci right 9.195107e-03	k: 43269	n:4750000
KS ci ratio: 5.767460e-03	ci left: 8.837866e-02	ci right 8.889005e-02	k: 421012	n:4750000
ROPN1   4750000 perm   10226 sec   (465 perm/sec)   p_kst 8.863411e-02   p_cons 9.109263e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.873999e-02	ci left: 9.023252e-03	ci right 9.194153e-03	k: 43356	n:4760000
KS ci ratio: 5.761529e-03	ci left: 8.837529e-02	ci right 8.888614e-02	k: 421881	n:4760000
ROPN1   4760000 perm   10268 sec   (464 perm/sec)   p_kst 8.863046e-02   p_cons 9.108403e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.871971e-02	ci left: 9.023949e-03	ci right 9.194677e-03	k: 43450	n:4770000
KS ci ratio: 5.755339e-03	ci left: 8.837968e-02	ci right 8.889000e-02	k: 422787	n:4770000
ROPN1   4770000 perm   10309 sec   (463 perm/sec)   p_kst 8.863459e-02   p_cons 9.109015e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.869948e-02	ci left: 9.024644e-03	ci right 9.195198e-03	k: 43544	n:4780000
KS ci ratio: 5.749326e-03	ci left: 8.837966e-02	ci right 8.888945e-02	k: 423672	n:4780000
ROPN1   4780000 perm   10350 sec   (462 perm/sec)   p_kst 8.863431e-02   p_cons 9.109623e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.868235e-02	ci left: 9.022427e-03	ci right 9.192781e-03	k: 43624	n:4790000
KS ci ratio: 5.743613e-03	ci left: 8.837173e-02	ci right 8.888096e-02	k: 424519	n:4790000
ROPN1   4790000 perm   10392 sec   (461 perm/sec)   p_kst 8.862610e-02   p_cons 9.107307e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.866031e-02	ci left: 9.024988e-03	ci right 9.195188e-03	k: 43727	n:4800000
KS ci ratio: 5.737651e-03	ci left: 8.837131e-02	ci right 8.888002e-02	k: 425402	n:4800000
ROPN1   4800000 perm   10433 sec   (460 perm/sec)   p_kst 8.862542e-02   p_cons 9.109792e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.863878e-02	ci left: 9.027126e-03	ci right 9.197167e-03	k: 43828	n:4810000
KS ci ratio: 5.731391e-03	ci left: 8.837983e-02	ci right 8.888802e-02	k: 426328	n:4810000
ROPN1   4810000 perm   10474 sec   (459 perm/sec)   p_kst 8.863368e-02   p_cons 9.111850e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.862032e-02	ci left: 9.026363e-03	ci right 9.196219e-03	k: 43915	n:4820000
KS ci ratio: 5.725585e-03	ci left: 8.837609e-02	ci right 8.888374e-02	k: 427195	n:4820000
ROPN1   4820000 perm   10515 sec   (458 perm/sec)   p_kst 8.862967e-02   p_cons 9.110996e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.860106e-02	ci left: 9.026428e-03	ci right 9.196108e-03	k: 44006	n:4830000
KS ci ratio: 5.719781e-03	ci left: 8.837277e-02	ci right 8.887989e-02	k: 428064	n:4830000
ROPN1   4830000 perm   10558 sec   (457 perm/sec)   p_kst 8.862609e-02   p_cons 9.110973e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.858122e-02	ci left: 9.027109e-03	ci right 9.196619e-03	k: 44100	n:4840000
KS ci ratio: 5.713725e-03	ci left: 8.837711e-02	ci right 8.888371e-02	k: 428970	n:4840000
ROPN1   4840000 perm   10600 sec   (457 perm/sec)   p_kst 8.863017e-02   p_cons 9.111570e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.856271e-02	ci left: 9.026557e-03	ci right 9.195886e-03	k: 44188	n:4850000
KS ci ratio: 5.707958e-03	ci left: 8.837381e-02	ci right 8.887988e-02	k: 429839	n:4850000
ROPN1   4850000 perm   10641 sec   (456 perm/sec)   p_kst 8.862660e-02   p_cons 9.110928e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.854173e-02	ci left: 9.028464e-03	ci right 9.197636e-03	k: 44288	n:4860000
KS ci ratio: 5.701823e-03	ci left: 8.838141e-02	ci right 8.888698e-02	k: 430761	n:4860000
ROPN1   4860000 perm   10683 sec   (455 perm/sec)   p_kst 8.863395e-02   p_cons 9.112757e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.852523e-02	ci left: 9.026072e-03	ci right 9.195046e-03	k: 44367	n:4870000
KS ci ratio: 5.696214e-03	ci left: 8.837463e-02	ci right 8.887966e-02	k: 431613	n:4870000
ROPN1   4870000 perm   10726 sec   (454 perm/sec)   p_kst 8.862690e-02   p_cons 9.110267e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.850522e-02	ci left: 9.027157e-03	ci right 9.195967e-03	k: 44463	n:4880000
KS ci ratio: 5.690435e-03	ci left: 8.837319e-02	ci right 8.887771e-02	k: 432491	n:4880000
ROPN1   4880000 perm   10768 sec   (453 perm/sec)   p_kst 8.862520e-02   p_cons 9.111270e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.848631e-02	ci left: 9.027220e-03	ci right 9.195857e-03	k: 44554	n:4890000
KS ci ratio: 5.684781e-03	ci left: 8.836870e-02	ci right 8.887269e-02	k: 433354	n:4890000
ROPN1   4890000 perm   10812 sec   (452 perm/sec)   p_kst 8.862045e-02   p_cons 9.111247e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.846579e-02	ci left: 9.028908e-03	ci right 9.197387e-03	k: 44653	n:4900000
KS ci ratio: 5.678483e-03	ci left: 8.838298e-02	ci right 8.888649e-02	k: 434309	n:4900000
ROPN1   4900000 perm   10855 sec   (451 perm/sec)   p_kst 8.863449e-02   p_cons 9.112857e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.844638e-02	ci left: 9.029575e-03	ci right 9.197888e-03	k: 44747	n:4910000
KS ci ratio: 5.673079e-03	ci left: 8.837239e-02	ci right 8.887535e-02	k: 435142	n:4910000
ROPN1   4910000 perm   10898 sec   (451 perm/sec)   p_kst 8.862363e-02   p_cons 9.113442e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.842744e-02	ci left: 9.029835e-03	ci right 9.197979e-03	k: 44839	n:4920000
KS ci ratio: 5.666914e-03	ci left: 8.838396e-02	ci right 8.888644e-02	k: 436084	n:4920000
ROPN1   4920000 perm   10941 sec   (450 perm/sec)   p_kst 8.863496e-02   p_cons 9.113618e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.840795e-02	ci left: 9.030700e-03	ci right 9.198680e-03	k: 44934	n:4930000
KS ci ratio: 5.661550e-03	ci left: 8.837321e-02	ci right 8.887515e-02	k: 436916	n:4930000
ROPN1   4930000 perm   10987 sec   (449 perm/sec)   p_kst 8.862394e-02   p_cons 9.114402e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.838604e-02	ci left: 9.033980e-03	ci right 9.201819e-03	k: 45041	n:4940000
KS ci ratio: 5.655967e-03	ci left: 8.836916e-02	ci right 8.887059e-02	k: 437781	n:4940000
ROPN1   4940000 perm   11030 sec   (448 perm/sec)   p_kst 8.861964e-02   p_cons 9.117611e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.836852e-02	ci left: 9.033024e-03	ci right 9.200683e-03	k: 45127	n:4950000
KS ci ratio: 5.650062e-03	ci left: 8.837483e-02	ci right 8.887576e-02	k: 438694	n:4950000
ROPN1   4950000 perm   11073 sec   (447 perm/sec)   p_kst 8.862505e-02   p_cons 9.116566e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.834594e-02	ci left: 9.037088e-03	ci right 9.204615e-03	k: 45238	n:4960000
KS ci ratio: 5.644449e-03	ci left: 8.837261e-02	ci right 8.887303e-02	k: 439568	n:4960000
ROPN1   4960000 perm   11117 sec   (446 perm/sec)   p_kst 8.862258e-02   p_cons 9.120565e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.832813e-02	ci left: 9.036530e-03	ci right 9.203882e-03	k: 45326	n:4970000
KS ci ratio: 5.638650e-03	ci left: 8.837623e-02	ci right 8.887616e-02	k: 440471	n:4970000
ROPN1   4970000 perm   11160 sec   (445 perm/sec)   p_kst 8.862596e-02   p_cons 9.119920e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.830935e-02	ci left: 9.036974e-03	ci right 9.204160e-03	k: 45419	n:4980000
KS ci ratio: 5.633142e-03	ci left: 8.837202e-02	ci right 8.887143e-02	k: 441335	n:4980000
ROPN1   4980000 perm   11203 sec   (445 perm/sec)   p_kst 8.862149e-02   p_cons 9.120281e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.828901e-02	ci left: 9.039011e-03	ci right 9.206048e-03	k: 45520	n:4990000
KS ci ratio: 5.627559e-03	ci left: 8.837043e-02	ci right 8.886933e-02	k: 442212	n:4990000
ROPN1   4990000 perm   11247 sec   (444 perm/sec)   p_kst 8.861964e-02   p_cons 9.122244e-03   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 1.826611e-02	ci left: 9.043629e-03	ci right 9.210540e-03	k: 45634	n:5000000
KS ci ratio: 5.622285e-03	ci left: 8.836045e-02	ci right 8.885883e-02	k: 443047	n:5000000
ROPN1   5000000 perm   11291 sec   (443 perm/sec)   p_kst 8.860940e-02   p_cons 9.126800e-03   p_joint 0

Outputting figure to mutsig2_images.part000000000148/ROPN1.2_659_5000000_0.088609_0.0091268_0.png
                gene_name: ROPN1
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.0091 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0092 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 71 percent done.
RNF139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.431120e-02	ci left: 7.133072e-01	ci right 7.309632e-01	k: 7222	n:10000
Cons ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
KS ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
RNF139   10000 perm   2 sec   (6114 perm/sec)   p_kst 4.110000e-01   p_cons 1.568000e-01   p_joint 7.222000e-01

Outputting figure to mutsig2_images.part000000000148/RNF139.2_2003_10000_0.411_0.1568_0.7222.png
                gene_name: RNF139
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 73 percent done.
RNF152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
Cons ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
KS ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
RNF152   10000 perm   1 sec   (7440 perm/sec)   p_kst 1.327000e-01   p_cons 2.239000e-01   p_joint 1.418000e-01

Joint ci ratio: 4.390892e-02	ci left: 2.786511e-01	ci right 2.912115e-01	k: 5698	n:20000
Cons ci ratio: 5.190455e-02	ci left: 2.161074e-01	ci right 2.276735e-01	k: 4437	n:20000
KS ci ratio: 7.026779e-02	ci left: 1.298983e-01	ci right 1.394082e-01	k: 2692	n:20000
RNF152   20000 perm   3 sec   (6364 perm/sec)   p_kst 1.346000e-01   p_cons 2.218500e-01   p_joint 2.849000e-01

Outputting figure to mutsig2_images.part000000000148/RNF152.2_616_20000_0.1346_0.22185_0.2849.png
                gene_name: RNF152
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 74 percent done.
RNF169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
RNF169   10000 perm   2 sec   (6140 perm/sec)   p_kst 9.800000e-03   p_cons 4.600000e-03   p_joint 4.100000e-03

Joint ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
Cons ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
KS ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
RNF169   20000 perm   4 sec   (5404 perm/sec)   p_kst 1.005000e-02   p_cons 4.900000e-03   p_joint 1.070000e-02

Joint ci ratio: 7.221473e-02	ci left: 8.619456e-02	ci right 9.268520e-02	k: 2682	n:30000
Cons ci ratio: 3.247453e-01	ci left: 4.049504e-03	ci right 5.648710e-03	k: 144	n:30000
KS ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
RNF169   30000 perm   6 sec   (5130 perm/sec)   p_kst 1.010000e-02   p_cons 4.800000e-03   p_joint 8.940000e-02

Joint ci ratio: 4.069357e-02	ci left: 1.844542e-01	ci right 1.921411e-01	k: 7531	n:40000
Cons ci ratio: 2.814827e-01	ci left: 4.146336e-03	ci right 5.527061e-03	k: 192	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
RNF169   40000 perm   8 sec   (4968 perm/sec)   p_kst 1.030000e-02   p_cons 4.800000e-03   p_joint 1.882750e-01

Joint ci ratio: 6.215887e-02	ci left: 7.138517e-02	ci right 7.598447e-02	k: 3683	n:50000
Cons ci ratio: 2.545648e-01	ci left: 4.119406e-03	ci right 5.339191e-03	k: 235	n:50000
KS ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
RNF169   50000 perm   10 sec   (4845 perm/sec)   p_kst 1.006000e-02   p_cons 4.700000e-03   p_joint 7.366000e-02

Joint ci ratio: 1.912934e-01	ci left: 6.284992e-03	ci right 7.630030e-03	k: 416	n:60000
Cons ci ratio: 2.362726e-01	ci left: 4.027245e-03	ci right 5.121526e-03	k: 273	n:60000
KS ci ratio: 1.584316e-01	ci left: 9.299348e-03	ci right 1.091523e-02	k: 605	n:60000
RNF169   60000 perm   13 sec   (4730 perm/sec)   p_kst 1.008333e-02   p_cons 4.550000e-03   p_joint 6.933333e-03

Joint ci ratio: 1.768292e-01	ci left: 6.354766e-03	ci right 7.600915e-03	k: 487	n:70000
Cons ci ratio: 2.193213e-01	ci left: 4.044673e-03	ci right 5.054216e-03	k: 317	n:70000
KS ci ratio: 1.472061e-01	ci left: 9.289904e-03	ci right 1.077970e-02	k: 701	n:70000
RNF169   70000 perm   15 sec   (4629 perm/sec)   p_kst 1.001429e-02   p_cons 4.528571e-03   p_joint 6.957143e-03

Joint ci ratio: 1.659662e-01	ci left: 6.350054e-03	ci right 7.511137e-03	k: 553	n:80000
Cons ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
KS ci ratio: 1.372061e-01	ci left: 9.406603e-03	ci right 1.080427e-02	k: 807	n:80000
RNF169   80000 perm   18 sec   (4539 perm/sec)   p_kst 1.008750e-02   p_cons 4.600000e-03   p_joint 6.912500e-03

Joint ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
Cons ci ratio: 1.899220e-01	ci left: 4.263630e-03	ci right 5.168748e-03	k: 423	n:90000
KS ci ratio: 1.287171e-01	ci left: 9.543063e-03	ci right 1.086657e-02	k: 917	n:90000
RNF169   90000 perm   20 sec   (4437 perm/sec)   p_kst 1.018889e-02   p_cons 4.700000e-03   p_joint 2.922222e-03

Joint ci ratio: 2.219358e-01	ci left: 2.764930e-03	ci right 3.464383e-03	k: 310	n:100000
Cons ci ratio: 1.805829e-01	ci left: 4.266408e-03	ci right 5.122710e-03	k: 468	n:100000
KS ci ratio: 1.214519e-01	ci left: 9.683460e-03	ci right 1.094519e-02	k: 1030	n:100000
RNF169   100000 perm   23 sec   (4348 perm/sec)   p_kst 1.030000e-02   p_cons 4.680000e-03   p_joint 3.100000e-03

Joint ci ratio: 1.652273e-01	ci left: 4.670166e-03	ci right 5.519886e-03	k: 559	n:110000
Cons ci ratio: 1.687463e-01	ci left: 4.469774e-03	ci right 5.302115e-03	k: 536	n:110000
KS ci ratio: 1.153944e-01	ci left: 9.782384e-03	ci right 1.098909e-02	k: 1141	n:110000
RNF169   110000 perm   26 sec   (4258 perm/sec)   p_kst 1.037273e-02   p_cons 4.872727e-03   p_joint 5.081818e-03

Joint ci ratio: 1.054564e-01	ci left: 1.078267e-02	ci right 1.199112e-02	k: 1365	n:120000
Cons ci ratio: 1.622342e-01	ci left: 4.448773e-03	ci right 5.242114e-03	k: 580	n:120000
KS ci ratio: 1.106533e-01	ci left: 9.776963e-03	ci right 1.093022e-02	k: 1241	n:120000
RNF169   120000 perm   29 sec   (4176 perm/sec)   p_kst 1.034167e-02   p_cons 4.833333e-03   p_joint 1.137500e-02

Joint ci ratio: 3.951635e-02	ci left: 6.897701e-02	ci right 7.176527e-02	k: 9147	n:130000
Cons ci ratio: 1.542063e-01	ci left: 4.564629e-03	ci right 5.334631e-03	k: 642	n:130000
KS ci ratio: 1.067339e-01	ci left: 9.720811e-03	ci right 1.082427e-02	k: 1334	n:130000
RNF169   130000 perm   32 sec   (4099 perm/sec)   p_kst 1.026154e-02   p_cons 4.938462e-03   p_joint 7.036154e-02

Joint ci ratio: 1.880910e-01	ci left: 2.801947e-03	ci right 3.390360e-03	k: 432	n:140000
Cons ci ratio: 1.470535e-01	ci left: 4.678524e-03	ci right 5.427915e-03	k: 706	n:140000
KS ci ratio: 1.028764e-01	ci left: 9.735947e-03	ci right 1.079877e-02	k: 1436	n:140000
RNF169   140000 perm   35 sec   (4027 perm/sec)   p_kst 1.025714e-02   p_cons 5.042857e-03   p_joint 3.085714e-03

Joint ci ratio: 9.481584e-02	ci left: 1.073216e-02	ci right 1.180685e-02	k: 1689	n:150000
Cons ci ratio: 1.426838e-01	ci left: 4.649319e-03	ci right 5.370018e-03	k: 750	n:150000
KS ci ratio: 9.901973e-02	ci left: 9.827721e-03	ci right 1.085800e-02	k: 1550	n:150000
RNF169   150000 perm   38 sec   (3958 perm/sec)   p_kst 1.033333e-02   p_cons 5.000000e-03   p_joint 1.126000e-02

Joint ci ratio: 9.189963e-02	ci left: 1.072675e-02	ci right 1.176608e-02	k: 1798	n:160000
Cons ci ratio: 1.397457e-01	ci left: 4.551654e-03	ci right 5.241474e-03	k: 782	n:160000
KS ci ratio: 9.624057e-02	ci left: 9.768337e-03	ci right 1.076203e-02	k: 1641	n:160000
RNF169   160000 perm   41 sec   (3892 perm/sec)   p_kst 1.025625e-02   p_cons 4.887500e-03   p_joint 1.123750e-02

Joint ci ratio: 8.923695e-02	ci left: 1.072242e-02	ci right 1.172965e-02	k: 1907	n:170000
Cons ci ratio: 1.354047e-01	ci left: 4.573589e-03	ci right 5.243467e-03	k: 833	n:170000
KS ci ratio: 9.335694e-02	ci left: 9.785251e-03	ci right 1.074921e-02	k: 1744	n:170000
RNF169   170000 perm   44 sec   (3827 perm/sec)   p_kst 1.025882e-02   p_cons 4.900000e-03   p_joint 1.121765e-02

Joint ci ratio: 8.884250e-02	ci left: 1.022438e-02	ci right 1.118036e-02	k: 1925	n:180000
Cons ci ratio: 1.314447e-01	ci left: 4.593380e-03	ci right 5.244944e-03	k: 884	n:180000
KS ci ratio: 9.047091e-02	ci left: 9.854990e-03	ci right 1.079422e-02	k: 1857	n:180000
RNF169   180000 perm   48 sec   (3765 perm/sec)   p_kst 1.031667e-02   p_cons 4.911111e-03   p_joint 1.069444e-02

Joint ci ratio: 8.445922e-02	ci left: 1.073680e-02	ci right 1.168873e-02	k: 2129	n:190000
Cons ci ratio: 1.280192e-01	ci left: 4.596057e-03	ci right 5.229720e-03	k: 932	n:190000
KS ci ratio: 8.788202e-02	ci left: 9.907500e-03	ci right 1.082332e-02	k: 1968	n:190000
RNF169   190000 perm   51 sec   (3707 perm/sec)   p_kst 1.035789e-02   p_cons 4.905263e-03   p_joint 1.120526e-02

Joint ci ratio: 1.230339e-01	ci left: 4.739189e-03	ci right 5.365289e-03	k: 1009	n:200000
Cons ci ratio: 1.244031e-01	ci left: 4.632578e-03	ci right 5.251905e-03	k: 987	n:200000
KS ci ratio: 8.569089e-02	ci left: 9.911056e-03	ci right 1.080322e-02	k: 2070	n:200000
RNF169   200000 perm   55 sec   (3650 perm/sec)   p_kst 1.035000e-02   p_cons 4.935000e-03   p_joint 5.045000e-03

Joint ci ratio: 8.725729e-02	ci left: 9.103492e-03	ci right 9.938702e-03	k: 1998	n:210000
Cons ci ratio: 1.211938e-01	ci left: 4.656611e-03	ci right 5.261940e-03	k: 1040	n:210000
KS ci ratio: 8.361702e-02	ci left: 9.923858e-03	ci right 1.079450e-02	k: 2174	n:210000
RNF169   210000 perm   58 sec   (3596 perm/sec)   p_kst 1.035238e-02   p_cons 4.952381e-03   p_joint 9.514286e-03

Joint ci ratio: 8.111329e-02	ci left: 1.007825e-02	ci right 1.093472e-02	k: 2310	n:220000
Cons ci ratio: 1.183296e-01	ci left: 4.669822e-03	ci right 5.261518e-03	k: 1091	n:220000
KS ci ratio: 8.177747e-02	ci left: 9.913464e-03	ci right 1.076315e-02	k: 2273	n:220000
RNF169   220000 perm   62 sec   (3543 perm/sec)   p_kst 1.033182e-02   p_cons 4.959091e-03   p_joint 1.050000e-02

Joint ci ratio: 8.161499e-02	ci left: 9.524956e-03	ci right 1.033964e-02	k: 2283	n:230000
Cons ci ratio: 1.157610e-01	ci left: 4.673593e-03	ci right 5.252034e-03	k: 1140	n:230000
KS ci ratio: 7.985047e-02	ci left: 9.955308e-03	ci right 1.078754e-02	k: 2384	n:230000
RNF169   230000 perm   66 sec   (3490 perm/sec)   p_kst 1.036522e-02   p_cons 4.956522e-03   p_joint 9.926087e-03

Joint ci ratio: 7.769265e-02	ci left: 1.008787e-02	ci right 1.090735e-02	k: 2518	n:240000
Cons ci ratio: 1.134007e-01	ci left: 4.673128e-03	ci right 5.238929e-03	k: 1188	n:240000
KS ci ratio: 7.833951e-02	ci left: 9.920332e-03	ci right 1.073323e-02	k: 2477	n:240000
RNF169   240000 perm   70 sec   (3433 perm/sec)   p_kst 1.032083e-02   p_cons 4.950000e-03   p_joint 1.049167e-02

Joint ci ratio: 7.609303e-02	ci left: 1.010412e-02	ci right 1.090729e-02	k: 2625	n:250000
Cons ci ratio: 1.114966e-01	ci left: 4.645586e-03	ci right 5.197987e-03	k: 1229	n:250000
KS ci ratio: 7.677552e-02	ci left: 9.923606e-03	ci right 1.071981e-02	k: 2579	n:250000
RNF169   250000 perm   74 sec   (3383 perm/sec)   p_kst 1.031600e-02   p_cons 4.916000e-03   p_joint 1.050000e-02

Joint ci ratio: 6.992711e-02	ci left: 1.152451e-02	ci right 1.236334e-02	k: 3104	n:260000
Cons ci ratio: 1.090832e-01	ci left: 4.672617e-03	ci right 5.215432e-03	k: 1284	n:260000
KS ci ratio: 7.518839e-02	ci left: 9.956973e-03	ci right 1.073862e-02	k: 2689	n:260000
RNF169   260000 perm   78 sec   (3332 perm/sec)   p_kst 1.034231e-02   p_cons 4.938462e-03   p_joint 1.193846e-02

Joint ci ratio: 8.129953e-02	ci left: 8.189817e-03	ci right 8.887461e-03	k: 2304	n:270000
Cons ci ratio: 1.063820e-01	ci left: 4.737423e-03	ci right 5.273287e-03	k: 1350	n:270000
KS ci ratio: 7.370908e-02	ci left: 9.984389e-03	ci right 1.075210e-02	k: 2798	n:270000
RNF169   270000 perm   82 sec   (3276 perm/sec)   p_kst 1.036296e-02   p_cons 5.000000e-03   p_joint 8.533333e-03

Joint ci ratio: 1.355360e-01	ci left: 2.776646e-03	ci right 3.183749e-03	k: 833	n:280000
Cons ci ratio: 1.046543e-01	ci left: 4.724701e-03	ci right 5.249912e-03	k: 1395	n:280000
KS ci ratio: 7.223852e-02	ci left: 1.003103e-02	ci right 1.078630e-02	k: 2913	n:280000
RNF169   280000 perm   87 sec   (3230 perm/sec)   p_kst 1.040357e-02   p_cons 4.982143e-03   p_joint 2.975000e-03

Joint ci ratio: 1.127376e-01	ci left: 3.917592e-03	ci right 4.388954e-03	k: 1203	n:290000
Cons ci ratio: 1.031882e-01	ci left: 4.696122e-03	ci right 5.210399e-03	k: 1435	n:290000
KS ci ratio: 7.081715e-02	ci left: 1.008476e-02	ci right 1.082852e-02	k: 3031	n:290000
RNF169   290000 perm   91 sec   (3189 perm/sec)   p_kst 1.045172e-02   p_cons 4.948276e-03   p_joint 4.148276e-03

Joint ci ratio: 1.318739e-01	ci left: 2.742960e-03	ci right 3.133407e-03	k: 880	n:300000
Cons ci ratio: 1.014716e-01	ci left: 4.698738e-03	ci right 5.204231e-03	k: 1484	n:300000
KS ci ratio: 6.973425e-02	ci left: 1.005970e-02	ci right 1.078980e-02	k: 3126	n:300000
RNF169   300000 perm   95 sec   (3149 perm/sec)   p_kst 1.042000e-02   p_cons 4.946667e-03   p_joint 2.933333e-03

Joint ci ratio: 1.094696e-01	ci left: 3.893782e-03	ci right 4.347823e-03	k: 1276	n:310000
Cons ci ratio: 9.931871e-02	ci left: 4.751585e-03	ci right 5.251286e-03	k: 1549	n:310000
KS ci ratio: 6.834674e-02	ci left: 1.014098e-02	ci right 1.086176e-02	k: 3254	n:310000
RNF169   310000 perm   100 sec   (3103 perm/sec)   p_kst 1.049677e-02   p_cons 4.996774e-03   p_joint 4.116129e-03

Joint ci ratio: 1.075489e-01	ci left: 3.911952e-03	ci right 4.359601e-03	k: 1322	n:320000
Cons ci ratio: 9.803203e-02	ci left: 4.728058e-03	ci right 5.218473e-03	k: 1590	n:320000
KS ci ratio: 6.728047e-02	ci left: 1.014357e-02	ci right 1.085284e-02	k: 3358	n:320000
RNF169   320000 perm   105 sec   (3062 perm/sec)   p_kst 1.049375e-02   p_cons 4.968750e-03   p_joint 4.131250e-03

Joint ci ratio: 1.058812e-01	ci left: 3.917284e-03	ci right 4.358160e-03	k: 1364	n:330000
Cons ci ratio: 9.670479e-02	ci left: 4.714868e-03	ci right 5.196918e-03	k: 1634	n:330000
KS ci ratio: 6.616611e-02	ci left: 1.017588e-02	ci right 1.087518e-02	k: 3472	n:330000
RNF169   330000 perm   109 sec   (3024 perm/sec)   p_kst 1.052121e-02   p_cons 4.951515e-03   p_joint 4.133333e-03

Joint ci ratio: 1.044007e-01	ci left: 3.913759e-03	ci right 4.347701e-03	k: 1403	n:340000
Cons ci ratio: 9.525914e-02	ci left: 4.719725e-03	ci right 5.194655e-03	k: 1684	n:340000
KS ci ratio: 6.515126e-02	ci left: 1.019192e-02	ci right 1.088117e-02	k: 3581	n:340000
RNF169   340000 perm   114 sec   (2984 perm/sec)   p_kst 1.053235e-02   p_cons 4.952941e-03   p_joint 4.126471e-03

Joint ci ratio: 1.031602e-01	ci left: 3.896557e-03	ci right 4.323147e-03	k: 1437	n:350000
Cons ci ratio: 9.398538e-02	ci left: 4.713193e-03	ci right 5.180775e-03	k: 1730	n:350000
KS ci ratio: 6.434046e-02	ci left: 1.015650e-02	ci right 1.083449e-02	k: 3672	n:350000
RNF169   350000 perm   119 sec   (2947 perm/sec)   p_kst 1.049143e-02   p_cons 4.942857e-03   p_joint 4.105714e-03

Joint ci ratio: 1.017894e-01	ci left: 3.893875e-03	ci right 4.314168e-03	k: 1476	n:360000
Cons ci ratio: 9.291917e-02	ci left: 4.690783e-03	ci right 5.150575e-03	k: 1770	n:360000
KS ci ratio: 6.347403e-02	ci left: 1.015045e-02	ci right 1.081857e-02	k: 3773	n:360000
RNF169   360000 perm   124 sec   (2910 perm/sec)   p_kst 1.048056e-02   p_cons 4.916667e-03   p_joint 4.100000e-03

Joint ci ratio: 1.005051e-01	ci left: 3.888740e-03	ci right 4.302870e-03	k: 1514	n:370000
Cons ci ratio: 9.183748e-02	ci left: 4.674894e-03	ci right 5.127508e-03	k: 1812	n:370000
KS ci ratio: 6.256830e-02	ci left: 1.016873e-02	ci right 1.082816e-02	k: 3883	n:370000
RNF169   370000 perm   129 sec   (2875 perm/sec)   p_kst 1.049459e-02   p_cons 4.897297e-03   p_joint 4.091892e-03

Joint ci ratio: 9.888540e-02	ci left: 3.914705e-03	ci right 4.324492e-03	k: 1564	n:380000
Cons ci ratio: 9.057217e-02	ci left: 4.683021e-03	ci right 5.129843e-03	k: 1863	n:380000
KS ci ratio: 6.152150e-02	ci left: 1.024571e-02	ci right 1.089862e-02	k: 4016	n:380000
RNF169   380000 perm   134 sec   (2841 perm/sec)   p_kst 1.056842e-02   p_cons 4.902632e-03   p_joint 4.115789e-03

Outputting figure to mutsig2_images.part000000000148/RNF169.2_2151_380000_0.010568_0.0049026_0.0041158.png
                gene_name: RNF169
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0047 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.0041 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0043 

Current progress: 76 percent done.
RNF185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
KS ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
RNF185   10000 perm   1 sec   (7054 perm/sec)   p_kst 7.741000e-01   p_cons 3.156000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF185.2_603_10000_0.7741_0.3156_1.png
                gene_name: RNF185
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
RNF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
Cons ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
KS ci ratio: 9.481795e-03	ci left: 9.401429e-01	ci right 9.491959e-01	k: 9448	n:10000
RNF2   10000 perm   1 sec   (6800 perm/sec)   p_kst 9.448000e-01   p_cons 3.883000e-01   p_joint 9.659000e-01

Outputting figure to mutsig2_images.part000000000148/RNF2.2_1035_10000_0.9448_0.3883_0.9659.png
                gene_name: RNF2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 79 percent done.
RNF207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.424458e-02	ci left: 7.144176e-01	ci right 7.320522e-01	k: 7233	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
RNF207   10000 perm   2 sec   (5998 perm/sec)   p_kst 9.162000e-01   p_cons 7.233000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF207.2_1973_10000_0.9162_0.7233_1.png
                gene_name: RNF207
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
RNF32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
RNF32   10000 perm   1 sec   (6680 perm/sec)   p_kst 1.502000e-01   p_cons 5.819000e-01   p_joint 3.283000e-01

Outputting figure to mutsig2_images.part000000000148/RNF32.2_1121_10000_0.1502_0.5819_0.3283.png
                gene_name: RNF32
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 82 percent done.
RNF44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
Cons ci ratio: 7.452509e-03	ci left: 9.614198e-01	ci right 9.687060e-01	k: 9652	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
RNF44   10000 perm   1 sec   (6866 perm/sec)   p_kst 3.070000e-02   p_cons 9.652000e-01   p_joint 1.733000e-01

Joint ci ratio: 6.527987e-02	ci left: 1.477407e-01	ci right 1.577605e-01	k: 3054	n:20000
Cons ci ratio: 5.605551e-03	ci left: 9.579659e-01	ci right 9.633991e-01	k: 19215	n:20000
KS ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
RNF44   20000 perm   3 sec   (5962 perm/sec)   p_kst 3.090000e-02   p_cons 9.607500e-01   p_joint 1.527000e-01

Joint ci ratio: 5.985092e-02	ci left: 1.213432e-01	ci right 1.288629e-01	k: 3752	n:30000
Cons ci ratio: 4.234822e-03	ci left: 9.640927e-01	ci right 9.682164e-01	k: 28986	n:30000
KS ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
RNF44   30000 perm   5 sec   (5595 perm/sec)   p_kst 3.033333e-02   p_cons 9.662000e-01   p_joint 1.250667e-01

Joint ci ratio: 1.679935e-02	ci left: 5.716148e-01	ci right 5.813241e-01	k: 23059	n:40000
Cons ci ratio: 3.688060e-03	ci left: 9.639979e-01	ci right 9.675840e-01	k: 38633	n:40000
KS ci ratio: 1.095346e-01	ci left: 2.932313e-02	ci right 3.274540e-02	k: 1240	n:40000
RNF44   40000 perm   7 sec   (5370 perm/sec)   p_kst 3.100000e-02   p_cons 9.658250e-01   p_joint 5.764750e-01

Joint ci ratio: 2.864253e-02	ci left: 2.686006e-01	ci right 2.764258e-01	k: 13625	n:50000
Cons ci ratio: 3.313694e-03	ci left: 9.638834e-01	ci right 9.671022e-01	k: 48276	n:50000
KS ci ratio: 9.739737e-02	ci left: 2.984958e-02	ci right 3.292515e-02	k: 1568	n:50000
RNF44   50000 perm   10 sec   (5149 perm/sec)   p_kst 3.136000e-02   p_cons 9.655200e-01   p_joint 2.725000e-01

Outputting figure to mutsig2_images.part000000000148/RNF44.2_1339_50000_0.03136_0.96552_0.2725.png
                gene_name: RNF44
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 84 percent done.
RNF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.692793e-02	ci left: 4.012342e-01	ci right 4.206178e-01	k: 4109	n:10000
KS ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
RNF5   10000 perm   1 sec   (7004 perm/sec)   p_kst 8.502000e-01   p_cons 4.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF5.2_567_10000_0.8502_0.4109_1.png
                gene_name: RNF5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
RNF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
KS ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
RNF6   10000 perm   2 sec   (6046 perm/sec)   p_kst 6.183000e-01   p_cons 4.715000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000148/RNF6.2_2070_10000_0.6183_0.4715_0.9813.png
                gene_name: RNF6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
RNF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
RNF7   10000 perm   1 sec   (7312 perm/sec)   p_kst 5.662000e-01   p_cons 7.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF7.2_354_10000_0.5662_0.7897_1.png
                gene_name: RNF7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
RNF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
Cons ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
KS ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
RNF8   10000 perm   2 sec   (6322 perm/sec)   p_kst 6.000000e-02   p_cons 2.764000e-01   p_joint 1.054000e-01

Joint ci ratio: 8.271826e-02	ci left: 9.675894e-02	ci right 1.051575e-01	k: 2018	n:20000
Cons ci ratio: 4.505691e-02	ci left: 2.683234e-01	ci right 2.807422e-01	k: 5490	n:20000
KS ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
RNF8   20000 perm   4 sec   (5476 perm/sec)   p_kst 6.105000e-02   p_cons 2.745000e-01   p_joint 1.009000e-01

Joint ci ratio: 5.951606e-02	ci left: 1.225607e-01	ci right 1.301119e-01	k: 3789	n:30000
Cons ci ratio: 3.677197e-02	ci left: 2.696544e-01	ci right 2.797893e-01	k: 8241	n:30000
KS ci ratio: 9.011304e-02	ci left: 5.665347e-02	ci right 6.203226e-02	k: 1779	n:30000
RNF8   30000 perm   6 sec   (5207 perm/sec)   p_kst 5.930000e-02   p_cons 2.747000e-01   p_joint 1.263000e-01

Outputting figure to mutsig2_images.part000000000148/RNF8.2_1584_30000_0.0593_0.2747_0.1263.png
                gene_name: RNF8
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 90 percent done.
RNH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
KS ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
RNH1   10000 perm   1 sec   (6825 perm/sec)   p_kst 8.419000e-01   p_cons 8.951000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNH1.2_1422_10000_0.8419_0.8951_1.png
                gene_name: RNH1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
RNLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
RNLS   10000 perm   2 sec   (6588 perm/sec)   p_kst 3.053000e-01   p_cons 5.800000e-02   p_joint 7.360000e-02

Joint ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
Cons ci ratio: 1.164706e-01	ci left: 5.047003e-02	ci right 5.676054e-02	k: 1071	n:20000
KS ci ratio: 4.191611e-02	ci left: 2.978277e-01	ci right 3.106292e-01	k: 6084	n:20000
RNLS   20000 perm   4 sec   (5685 perm/sec)   p_kst 3.042000e-01   p_cons 5.355000e-02   p_joint 1.253500e-01

Joint ci ratio: 8.440947e-02	ci left: 6.422883e-02	ci right 6.992203e-02	k: 2011	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 3.417730e-02	ci left: 2.995935e-01	ci right 3.100443e-01	k: 9144	n:30000
RNLS   30000 perm   6 sec   (5389 perm/sec)   p_kst 3.048000e-01   p_cons 5.120000e-02   p_joint 6.703333e-02

Outputting figure to mutsig2_images.part000000000148/RNLS.2_1133_30000_0.3048_0.0512_0.067033.png
                gene_name: RNLS
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.070 

Current progress: 94 percent done.
ROBLD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
Cons ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
ROBLD3   10000 perm   1 sec   (7178 perm/sec)   p_kst 6.060000e-02   p_cons 2.932000e-01   p_joint 5.483000e-01

Joint ci ratio: 2.289347e-02	ci left: 5.876069e-01	ci right 6.012656e-01	k: 11889	n:20000
Cons ci ratio: 4.303117e-02	ci left: 2.868964e-01	ci right 2.995638e-01	k: 5864	n:20000
KS ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
ROBLD3   20000 perm   3 sec   (6221 perm/sec)   p_kst 5.745000e-02   p_cons 2.932000e-01   p_joint 5.944500e-01

Joint ci ratio: 1.965376e-02	ci left: 5.644413e-01	ci right 5.756784e-01	k: 17102	n:30000
Cons ci ratio: 3.504606e-02	ci left: 2.891133e-01	ci right 2.994599e-01	k: 8828	n:30000
KS ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
ROBLD3   30000 perm   5 sec   (5848 perm/sec)   p_kst 5.680000e-02   p_cons 2.942667e-01   p_joint 5.700667e-01

Outputting figure to mutsig2_images.part000000000148/ROBLD3.2_394_30000_0.0568_0.29427_0.57007.png
                gene_name: ROBLD3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 95 percent done.
ROPN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
KS ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
ROPN1B   10000 perm   1 sec   (6944 perm/sec)   p_kst 6.635000e-01   p_cons 3.509000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000148/ROPN1B.2_659_10000_0.6635_0.3509_0.971.png
                gene_name: ROPN1B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 97 percent done.
ROPN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
Cons ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
KS ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
ROPN1L   10000 perm   1 sec   (7016 perm/sec)   p_kst 2.046000e-01   p_cons 6.040000e-02   p_joint 8.930000e-02

Joint ci ratio: 5.276876e-02	ci left: 2.105115e-01	ci right 2.219711e-01	k: 4324	n:20000
Cons ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
KS ci ratio: 5.347938e-02	ci left: 2.060556e-01	ci right 2.174283e-01	k: 4234	n:20000
ROPN1L   20000 perm   3 sec   (6044 perm/sec)   p_kst 2.117000e-01   p_cons 5.915000e-02   p_joint 2.162000e-01

Joint ci ratio: 5.266169e-02	ci left: 1.517789e-01	ci right 1.600212e-01	k: 4676	n:30000
Cons ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
KS ci ratio: 4.379932e-02	ci left: 2.060968e-01	ci right 2.153592e-01	k: 6321	n:30000
ROPN1L   30000 perm   5 sec   (5646 perm/sec)   p_kst 2.107000e-01   p_cons 6.036667e-02   p_joint 1.558667e-01

Outputting figure to mutsig2_images.part000000000148/ROPN1L.2_713_30000_0.2107_0.060367_0.15587.png
                gene_name: ROPN1L
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
RORC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
RORC   10000 perm   2 sec   (5796 perm/sec)   p_kst 4.324000e-01   p_cons 3.835000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RORC.2_1612_10000_0.4324_0.3835_1.png
                gene_name: RORC
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000148
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 148 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1428>
Subject: Job 4422394: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1428>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000149> was used as the working directory.
Started at Wed Oct 24 18:06:36 2012
Results reported at Wed Oct 24 18:17:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000149.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000149.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 149  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000149.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    749.57 sec.
    Max Memory :      5324 MB
    Max Swap   :      7685 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
149
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 149
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 149: processing genes 13391 - 13480
Calculating significance of each gene.
Using projection method.
13391	RP1L1	9.989601e-01
13392	RP2	1.025842e-01
13393	RP9	1
13394	RPA1	1
13395	RPA2	8.416377e-01
13396	RPA3	1
13397	RPA4	6.483214e-03
13398	RPAIN	4.831512e-01
13399	RPAP1	9.985751e-01
13400	RPAP2	1
13401	RPAP3	9.640388e-01
13402	RPE	2.516183e-01
13403	RPE65	5.740038e-02
13404	RPF1	8.326874e-01
13405	RPF2	1
13406	RPGR	7.728880e-01
13407	RPGRIP1	9.945366e-01
13408	RPGRIP1L	1.780562e-01
13409	RPH3A	8.862082e-01
13410	RPH3AL	1
13411	RPIA	2.258930e-02
13412	RPL10	2.408248e-01
13413	RPL10A	1
13414	RPL10L	9.462814e-06
13415	RPL11	5.270207e-01
13416	RPL12	6.820429e-01
13417	RPL13	1
13418	RPL13A	1
13419	RPL14	7.812186e-01
13420	RPL15	5.579706e-01
13421	RPL17	1
13422	RPL18	1
13423	RPL18A	1
13424	RPL19	3.877257e-01
13425	RPL21	3.359880e-01
13426	RPL22	4.002433e-01
13427	RPL22L1	1
13428	RPL23	1
13429	RPL23A	1.970740e-01
13430	RPL24	3.696214e-01
13431	RPL26	1
13432	RPL26L1	1
13433	RPL27	1
13434	RPL27A	5.092212e-01
13435	RPL28	1
13436	RPL29	7.003413e-01
13437	RPL3	7.981206e-01
13438	RPL30	1.809898e-01
13439	RPL31	1
13440	RPL32	1
13441	RPL34	1
13442	RPL35	6.492069e-01
13443	RPL35A	1
13444	RPL36	1
13445	RPL36A	4.773086e-01
13446	RPL36AL	1
13447	RPL37	4.462918e-01
13448	RPL37A	1
13449	RPL38	1
13450	RPL39	1
13451	RPL39L	1
13452	RPL3L	7.214187e-01
13453	RPL4	2.093906e-01
13454	RPL41	1
13455	RPL5	6.047678e-01
13456	RPL6	1.375574e-01
13457	RPL7	7.255534e-01
13458	RPL7A	8.684581e-01
13459	RPL7L1	5.778993e-01
13460	RPL8	6.406376e-01
13461	RPL9	1
13462	RPLP0	2.142324e-01
13463	RPLP1	1
13464	RPLP2	3.191846e-01
13465	RPN1	1
13466	RPN2	6.279691e-01
13467	RPP14	1
13468	RPP21	1
13469	RPP25	2.823994e-01
13470	RPP30	1
13471	RPP38	1
13472	RPP40	4.089049e-01
13473	RPRD1A	1
13474	RPRD1B	1.328573e-01
13475	RPRD2	9.979383e-01
13476	RPRM	1
13477	RPRML	1
13478	RPS10	7.131433e-01
13479	RPS11	5.838019e-01
13480	RPS12	5.794159e-01
Done

Running MutSig 2:
Scatter job 149: processing genes 13391 - 13480
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RP1L1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
RP1L1   10000 perm   5 sec   (2175 perm/sec)   p_kst 2.919000e-01   p_cons 8.413000e-01   p_joint 4.599000e-01

Outputting figure to mutsig2_images.part000000000149/RP1L1.51_7215_10000_0.2919_0.8413_0.4599.png
                gene_name: RP1L1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
RPGRIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.119669e-02	ci left: 4.652708e-01	ci right 4.849437e-01	k: 4751	n:10000
Cons ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
KS ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
RPGRIP1L   10000 perm   3 sec   (3894 perm/sec)   p_kst 4.623000e-01   p_cons 3.013000e-01   p_joint 4.751000e-01

Outputting figure to mutsig2_images.part000000000149/RPGRIP1L.12_4052_10000_0.4623_0.3013_0.4751.png
                gene_name: RPGRIP1L
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 8 percent done.
RPRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
RPRD2   10000 perm   3 sec   (3689 perm/sec)   p_kst 2.028000e-01   p_cons 1.581000e-01   p_joint 1.511000e-01

Outputting figure to mutsig2_images.part000000000149/RPRD2.10_4430_10000_0.2028_0.1581_0.1511.png
                gene_name: RPRD2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 12 percent done.
RPE65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
RPE65   10000 perm   2 sec   (5250 perm/sec)   p_kst 6.754000e-01   p_cons 1.579000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000149/RPE65.9_1658_10000_0.6754_0.1579_0.3418.png
                gene_name: RPE65
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 16 percent done.
RPL10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
Cons ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
RPL10L   10000 perm   2 sec   (4658 perm/sec)   p_kst 7.124000e-01   p_cons 7.433000e-01   p_joint 8.461000e-01

Outputting figure to mutsig2_images.part000000000149/RPL10L.9_649_10000_0.7124_0.7433_0.8461.png
                gene_name: RPL10L
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 20 percent done.
RPH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
Cons ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
RPH3A   10000 perm   2 sec   (5025 perm/sec)   p_kst 3.560000e-01   p_cons 1.112000e-01   p_joint 1.970000e-01

Joint ci ratio: 6.378337e-02	ci left: 1.537595e-01	ci right 1.639399e-01	k: 3176	n:20000
Cons ci ratio: 7.986614e-02	ci left: 1.031904e-01	ci right 1.118241e-01	k: 2149	n:20000
KS ci ratio: 3.658426e-02	ci left: 3.579743e-01	ci right 3.713651e-01	k: 7293	n:20000
RPH3A   20000 perm   4 sec   (4548 perm/sec)   p_kst 3.646500e-01   p_cons 1.074500e-01   p_joint 1.588000e-01

Outputting figure to mutsig2_images.part000000000149/RPH3A.8_2165_20000_0.36465_0.10745_0.1588.png
                gene_name: RPH3A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 24 percent done.
RPGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
Cons ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
KS ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
RPGR   10000 perm   2 sec   (4315 perm/sec)   p_kst 6.050000e-02   p_cons 9.010000e-01   p_joint 1.344000e-01

Joint ci ratio: 6.463191e-02	ci left: 1.503058e-01	ci right 1.603947e-01	k: 3106	n:20000
Cons ci ratio: 9.192062e-03	ci left: 8.967264e-01	ci right 9.050566e-01	k: 18019	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
RPGR   20000 perm   5 sec   (3900 perm/sec)   p_kst 5.985000e-02   p_cons 9.009500e-01   p_joint 1.553000e-01

Joint ci ratio: 5.717354e-02	ci left: 1.315800e-01	ci right 1.393574e-01	k: 4063	n:30000
Cons ci ratio: 7.502811e-03	ci left: 8.975648e-01	ci right 9.043573e-01	k: 27030	n:30000
KS ci ratio: 8.910624e-02	ci left: 5.789344e-02	ci right 6.332537e-02	k: 1817	n:30000
RPGR   30000 perm   8 sec   (3743 perm/sec)   p_kst 6.056667e-02   p_cons 9.010000e-01   p_joint 1.354333e-01

Outputting figure to mutsig2_images.part000000000149/RPGR.7_4078_30000_0.060567_0.901_0.13543.png
                gene_name: RPGR
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 28 percent done.
RPGRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
Cons ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
RPGRIP1   10000 perm   2 sec   (4390 perm/sec)   p_kst 1.194000e-01   p_cons 5.791000e-01   p_joint 3.009000e-01

Joint ci ratio: 5.087438e-02	ci left: 2.230427e-01	ci right 2.347363e-01	k: 4577	n:20000
Cons ci ratio: 2.294097e-02	ci left: 5.866044e-01	ci right 6.002684e-01	k: 11869	n:20000
KS ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
RPGRIP1   20000 perm   5 sec   (3993 perm/sec)   p_kst 1.194000e-01   p_cons 5.934500e-01   p_joint 2.288500e-01

Outputting figure to mutsig2_images.part000000000149/RPGRIP1.6_3957_20000_0.1194_0.59345_0.22885.png
                gene_name: RPGRIP1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 32 percent done.
RP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
Cons ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
KS ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
RP2   10000 perm   2 sec   (5685 perm/sec)   p_kst 3.575000e-01   p_cons 2.899000e-01   p_joint 4.136000e-01

Outputting figure to mutsig2_images.part000000000149/RP2.5_1073_10000_0.3575_0.2899_0.4136.png
                gene_name: RP2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 36 percent done.
RPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
Cons ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
RPA4   10000 perm   2 sec   (6138 perm/sec)   p_kst 1.079000e-01   p_cons 4.834000e-01   p_joint 2.967000e-01

Joint ci ratio: 4.829939e-02	ci left: 2.417294e-01	ci right 2.537440e-01	k: 4954	n:20000
Cons ci ratio: 2.844383e-02	ci left: 4.801001e-01	ci right 4.940037e-01	k: 9741	n:20000
KS ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
RPA4   20000 perm   4 sec   (5434 perm/sec)   p_kst 1.033000e-01   p_cons 4.870500e-01   p_joint 2.477000e-01

Outputting figure to mutsig2_images.part000000000149/RPA4.5_790_20000_0.1033_0.48705_0.2477.png
                gene_name: RPA4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 40 percent done.
RPIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
Cons ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
KS ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
RPIA   10000 perm   2 sec   (6033 perm/sec)   p_kst 1.411000e-01   p_cons 4.140000e-01   p_joint 2.080000e-01

Outputting figure to mutsig2_images.part000000000149/RPIA.5_972_10000_0.1411_0.414_0.208.png
                gene_name: RPIA
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 44 percent done.
RPL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
Cons ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
KS ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
RPL4   10000 perm   2 sec   (6267 perm/sec)   p_kst 3.654000e-01   p_cons 1.504000e-01   p_joint 3.959000e-01

Outputting figure to mutsig2_images.part000000000149/RPL4.5_1324_10000_0.3654_0.1504_0.3959.png
                gene_name: RPL4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 48 percent done.
RPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
RPN2   10000 perm   2 sec   (5389 perm/sec)   p_kst 8.400000e-03   p_cons 3.970000e-02   p_joint 9.300000e-03

Joint ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
Cons ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
KS ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
RPN2   20000 perm   4 sec   (4817 perm/sec)   p_kst 9.250000e-03   p_cons 4.010000e-02   p_joint 5.500000e-03

Joint ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
Cons ci ratio: 1.046657e-01	ci left: 4.232417e-02	ci right 4.703119e-02	k: 1339	n:30000
KS ci ratio: 2.379288e-01	ci left: 7.899689e-03	ci right 1.006368e-02	k: 268	n:30000
RPN2   30000 perm   7 sec   (4588 perm/sec)   p_kst 8.933333e-03   p_cons 4.463333e-02   p_joint 2.733333e-03

Joint ci ratio: 2.418460e-01	ci left: 5.735981e-03	ci right 7.336924e-03	k: 260	n:40000
Cons ci ratio: 9.182436e-02	ci left: 4.157064e-02	ci right 4.559596e-02	k: 1742	n:40000
KS ci ratio: 2.036790e-01	ci left: 8.240160e-03	ci right 1.013212e-02	k: 366	n:40000
RPN2   40000 perm   9 sec   (4446 perm/sec)   p_kst 9.150000e-03   p_cons 4.355000e-02   p_joint 6.500000e-03

Joint ci ratio: 2.498228e-01	ci left: 4.288075e-03	ci right 5.530478e-03	k: 244	n:50000
Cons ci ratio: 8.230334e-02	ci left: 4.161098e-02	ci right 4.520227e-02	k: 2169	n:50000
KS ci ratio: 1.829326e-01	ci left: 8.267170e-03	ci right 9.950565e-03	k: 454	n:50000
RPN2   50000 perm   12 sec   (4334 perm/sec)   p_kst 9.080000e-03   p_cons 4.338000e-02   p_joint 4.880000e-03

Joint ci ratio: 2.425788e-01	ci left: 3.807855e-03	ci right 4.874298e-03	k: 259	n:60000
Cons ci ratio: 7.532921e-02	ci left: 4.155430e-02	ci right 4.482341e-02	k: 2590	n:60000
KS ci ratio: 1.676148e-01	ci left: 8.275796e-03	ci right 9.805593e-03	k: 541	n:60000
RPN2   60000 perm   14 sec   (4227 perm/sec)   p_kst 9.016667e-03   p_cons 4.316667e-02   p_joint 4.316667e-03

Joint ci ratio: 2.609111e-01	ci left: 2.795179e-03	ci right 3.646824e-03	k: 224	n:70000
Cons ci ratio: 6.967916e-02	ci left: 4.174787e-02	ci right 4.477585e-02	k: 3027	n:70000
KS ci ratio: 1.559715e-01	ci left: 8.244988e-03	ci right 9.653312e-03	k: 625	n:70000
RPN2   70000 perm   17 sec   (4134 perm/sec)   p_kst 8.928571e-03   p_cons 4.324286e-02   p_joint 3.200000e-03

Joint ci ratio: 1.309629e-01	ci left: 1.034923e-02	ci right 1.181155e-02	k: 885	n:80000
Cons ci ratio: 6.548184e-02	ci left: 4.146930e-02	ci right 4.428898e-02	k: 3429	n:80000
KS ci ratio: 1.404006e-01	ci left: 8.972089e-03	ci right 1.033882e-02	k: 771	n:80000
RPN2   80000 perm   20 sec   (4053 perm/sec)   p_kst 9.637500e-03   p_cons 4.286250e-02   p_joint 1.106250e-02

Joint ci ratio: 2.782741e-01	ci left: 1.894154e-03	ci right 2.516406e-03	k: 197	n:90000
Cons ci ratio: 6.162645e-02	ci left: 4.169483e-02	ci right 4.435695e-02	k: 3871	n:90000
KS ci ratio: 1.365188e-01	ci left: 8.457715e-03	ci right 9.707568e-03	k: 816	n:90000
RPN2   90000 perm   23 sec   (3975 perm/sec)   p_kst 9.066667e-03   p_cons 4.301111e-02   p_joint 2.188889e-03

Joint ci ratio: 2.735025e-01	ci left: 1.769880e-03	ci right 2.339621e-03	k: 204	n:100000
Cons ci ratio: 5.855810e-02	ci left: 4.163265e-02	ci right 4.415395e-02	k: 4288	n:100000
KS ci ratio: 1.308120e-01	ci left: 8.317498e-03	ci right 9.491253e-03	k: 889	n:100000
RPN2   100000 perm   26 sec   (3905 perm/sec)   p_kst 8.890000e-03   p_cons 4.288000e-02   p_joint 2.040000e-03

Joint ci ratio: 2.177932e-01	ci left: 2.616634e-03	ci right 3.264559e-03	k: 322	n:110000
Cons ci ratio: 5.806025e-02	ci left: 3.863443e-02	ci right 4.095355e-02	k: 4376	n:110000
KS ci ratio: 1.242769e-01	ci left: 8.406278e-03	ci right 9.528932e-03	k: 985	n:110000
RPN2   110000 perm   29 sec   (3837 perm/sec)   p_kst 8.954545e-03   p_cons 3.978182e-02   p_joint 2.927273e-03

Joint ci ratio: 2.216367e-01	ci left: 2.311917e-03	ci right 2.895868e-03	k: 311	n:120000
Cons ci ratio: 5.340618e-02	ci left: 4.181800e-02	ci right 4.412082e-02	k: 5155	n:120000
KS ci ratio: 1.187433e-01	ci left: 8.465300e-03	ci right 9.541963e-03	k: 1079	n:120000
RPN2   120000 perm   32 sec   (3773 perm/sec)   p_kst 8.991667e-03   p_cons 4.295833e-02   p_joint 2.591667e-03

Joint ci ratio: 1.880685e-01	ci left: 3.017513e-03	ci right 3.651114e-03	k: 432	n:130000
Cons ci ratio: 5.140564e-02	ci left: 4.171369e-02	ci right 4.392215e-02	k: 5565	n:130000
KS ci ratio: 1.145801e-01	ci left: 8.411538e-03	ci right 9.441315e-03	k: 1159	n:130000
RPN2   130000 perm   35 sec   (3704 perm/sec)   p_kst 8.915385e-03   p_cons 4.280769e-02   p_joint 3.323077e-03

Joint ci ratio: 1.786151e-01	ci left: 3.122307e-03	ci right 3.741399e-03	k: 479	n:140000
Cons ci ratio: 4.941165e-02	ci left: 4.195741e-02	ci right 4.409014e-02	k: 6022	n:140000
KS ci ratio: 1.104224e-01	ci left: 8.428546e-03	ci right 9.420525e-03	k: 1248	n:140000
RPN2   140000 perm   38 sec   (3640 perm/sec)   p_kst 8.914286e-03   p_cons 4.301429e-02   p_joint 3.421429e-03

Joint ci ratio: 1.290531e-01	ci left: 5.718652e-03	ci right 6.513954e-03	k: 916	n:150000
Cons ci ratio: 4.766375e-02	ci left: 4.211733e-02	ci right 4.418037e-02	k: 6471	n:150000
KS ci ratio: 1.058126e-01	ci left: 8.586673e-03	ci right 9.552447e-03	k: 1359	n:150000
RPN2   150000 perm   42 sec   (3576 perm/sec)   p_kst 9.060000e-03   p_cons 4.314000e-02   p_joint 6.106667e-03

Joint ci ratio: 1.296479e-01	ci left: 5.312781e-03	ci right 6.055303e-03	k: 908	n:160000
Cons ci ratio: 4.619034e-02	ci left: 4.207917e-02	ci right 4.407493e-02	k: 6891	n:160000
KS ci ratio: 1.022986e-01	ci left: 8.628314e-03	ci right 9.564604e-03	k: 1454	n:160000
RPN2   160000 perm   45 sec   (3520 perm/sec)   p_kst 9.087500e-03   p_cons 4.306875e-02   p_joint 5.675000e-03

Joint ci ratio: 1.483894e-01	ci left: 3.784792e-03	ci right 4.397016e-03	k: 694	n:170000
Cons ci ratio: 4.481681e-02	ci left: 4.209875e-02	ci right 4.403452e-02	k: 7320	n:170000
KS ci ratio: 9.937199e-02	ci left: 8.619623e-03	ci right 9.526650e-03	k: 1541	n:170000
RPN2   170000 perm   49 sec   (3465 perm/sec)   p_kst 9.064706e-03   p_cons 4.305882e-02   p_joint 4.082353e-03

Joint ci ratio: 1.569054e-01	ci left: 3.184370e-03	ci right 3.731814e-03	k: 621	n:180000
Cons ci ratio: 4.359130e-02	ci left: 4.205646e-02	ci right 4.393607e-02	k: 7738	n:180000
KS ci ratio: 9.647407e-02	ci left: 8.650195e-03	ci right 9.532392e-03	k: 1635	n:180000
RPN2   180000 perm   53 sec   (3413 perm/sec)   p_kst 9.083333e-03   p_cons 4.298889e-02   p_joint 3.450000e-03

Joint ci ratio: 1.533731e-01	ci left: 3.163475e-03	ci right 3.693959e-03	k: 650	n:190000
Cons ci ratio: 4.245295e-02	ci left: 4.203490e-02	ci right 4.386329e-02	k: 8159	n:190000
KS ci ratio: 9.359757e-02	ci left: 8.719019e-03	ci right 9.580268e-03	k: 1737	n:190000
RPN2   190000 perm   57 sec   (3361 perm/sec)   p_kst 9.142105e-03   p_cons 4.294211e-02   p_joint 3.421053e-03

Joint ci ratio: 1.268789e-01	ci left: 4.448522e-03	ci right 5.055969e-03	k: 949	n:200000
Cons ci ratio: 4.136160e-02	ci left: 4.209033e-02	ci right 4.387294e-02	k: 8595	n:200000
KS ci ratio: 9.024883e-02	ci left: 8.923054e-03	ci right 9.771258e-03	k: 1868	n:200000
RPN2   200000 perm   60 sec   (3310 perm/sec)   p_kst 9.340000e-03   p_cons 4.297500e-02   p_joint 4.745000e-03

Joint ci ratio: 1.353869e-01	ci left: 3.706917e-03	ci right 4.249773e-03	k: 834	n:210000
Cons ci ratio: 4.028511e-02	ci left: 4.227308e-02	ci right 4.401575e-02	k: 9059	n:210000
KS ci ratio: 8.797096e-02	ci left: 8.954420e-03	ci right 9.783017e-03	k: 1966	n:210000
RPN2   210000 perm   64 sec   (3262 perm/sec)   p_kst 9.361905e-03   p_cons 4.313810e-02   p_joint 3.971429e-03

Joint ci ratio: 1.290382e-01	ci left: 3.907641e-03	ci right 4.451005e-03	k: 918	n:220000
Cons ci ratio: 4.098666e-02	ci left: 3.909943e-02	ci right 4.073999e-02	k: 8781	n:220000
KS ci ratio: 8.617380e-02	ci left: 8.916451e-03	ci right 9.723830e-03	k: 2049	n:220000
RPN2   220000 perm   68 sec   (3215 perm/sec)   p_kst 9.313636e-03   p_cons 3.991364e-02   p_joint 4.172727e-03

Joint ci ratio: 1.261210e-01	ci left: 3.918735e-03	ci right 4.450401e-03	k: 961	n:230000
Cons ci ratio: 4.011576e-02	ci left: 3.906068e-02	ci right 4.066398e-02	k: 9167	n:230000
KS ci ratio: 8.416441e-02	ci left: 8.950052e-03	ci right 9.740648e-03	k: 2148	n:230000
RPN2   230000 perm   73 sec   (3169 perm/sec)   p_kst 9.339130e-03   p_cons 3.985652e-02   p_joint 4.178261e-03

Joint ci ratio: 1.252850e-01	ci left: 3.807904e-03	ci right 4.320854e-03	k: 974	n:240000
Cons ci ratio: 3.922547e-02	ci left: 3.916583e-02	ci right 4.073697e-02	k: 9587	n:240000
KS ci ratio: 8.234481e-02	ci left: 8.968809e-03	ci right 9.743110e-03	k: 2244	n:240000
RPN2   240000 perm   77 sec   (3124 perm/sec)   p_kst 9.350000e-03   p_cons 3.994583e-02   p_joint 4.058333e-03

Joint ci ratio: 1.367511e-01	ci left: 3.051917e-03	ci right 3.503720e-03	k: 818	n:250000
Cons ci ratio: 3.844398e-02	ci left: 3.915989e-02	ci right 4.069880e-02	k: 9981	n:250000
KS ci ratio: 8.056888e-02	ci left: 9.001914e-03	ci right 9.761525e-03	k: 2344	n:250000
RPN2   250000 perm   81 sec   (3083 perm/sec)   p_kst 9.376000e-03   p_cons 3.992400e-02   p_joint 3.272000e-03

Joint ci ratio: 1.338403e-01	ci left: 3.068313e-03	ci right 3.512104e-03	k: 854	n:260000
Cons ci ratio: 3.772636e-02	ci left: 3.911658e-02	ci right 4.062447e-02	k: 10365	n:260000
KS ci ratio: 7.874072e-02	ci left: 9.070349e-03	ci right 9.817571e-03	k: 2454	n:260000
RPN2   260000 perm   86 sec   (3041 perm/sec)   p_kst 9.438462e-03   p_cons 3.986538e-02   p_joint 3.284615e-03

Joint ci ratio: 1.310341e-01	ci left: 3.087170e-03	ci right 3.523599e-03	k: 891	n:270000
Cons ci ratio: 3.701700e-02	ci left: 3.913913e-02	ci right 4.061891e-02	k: 10766	n:270000
KS ci ratio: 7.721414e-02	ci left: 9.090298e-03	ci right 9.823993e-03	k: 2552	n:270000
RPN2   270000 perm   90 sec   (3001 perm/sec)   p_kst 9.451852e-03   p_cons 3.987407e-02   p_joint 3.300000e-03

Joint ci ratio: 1.297352e-01	ci left: 3.039098e-03	ci right 3.464144e-03	k: 909	n:280000
Cons ci ratio: 3.638525e-02	ci left: 3.907889e-02	ci right 4.053065e-02	k: 11144	n:280000
KS ci ratio: 7.593225e-02	ci left: 9.070406e-03	ci right 9.789803e-03	k: 2639	n:280000
RPN2   280000 perm   95 sec   (2961 perm/sec)   p_kst 9.425000e-03   p_cons 3.980000e-02   p_joint 3.246429e-03

Joint ci ratio: 1.281972e-01	ci left: 3.007713e-03	ci right 3.423003e-03	k: 931	n:290000
Cons ci ratio: 3.577507e-02	ci left: 3.904352e-02	ci right 4.046914e-02	k: 11528	n:290000
KS ci ratio: 7.483690e-02	ci left: 9.021520e-03	ci right 9.726269e-03	k: 2717	n:290000
RPN2   290000 perm   99 sec   (2923 perm/sec)   p_kst 9.368966e-03   p_cons 3.975172e-02   p_joint 3.210345e-03

Joint ci ratio: 1.328606e-01	ci left: 2.701058e-03	ci right 3.088644e-03	k: 867	n:300000
Cons ci ratio: 3.513782e-02	ci left: 3.913299e-02	ci right 4.053591e-02	k: 11949	n:300000
KS ci ratio: 7.381427e-02	ci left: 8.969418e-03	ci right 9.660111e-03	k: 2793	n:300000
RPN2   300000 perm   104 sec   (2886 perm/sec)   p_kst 9.310000e-03   p_cons 3.983000e-02   p_joint 2.890000e-03

Joint ci ratio: 1.303315e-01	ci left: 2.719996e-03	ci right 3.102294e-03	k: 901	n:310000
Cons ci ratio: 3.459465e-02	ci left: 3.908254e-02	ci right 4.046156e-02	k: 12328	n:310000
KS ci ratio: 7.246379e-02	ci left: 9.012604e-03	ci right 9.693390e-03	k: 2898	n:310000
RPN2   310000 perm   109 sec   (2849 perm/sec)   p_kst 9.348387e-03   p_cons 3.976774e-02   p_joint 2.906452e-03

Joint ci ratio: 1.285629e-01	ci left: 2.710590e-03	ci right 3.086002e-03	k: 926	n:320000
Cons ci ratio: 3.407172e-02	ci left: 3.904470e-02	ci right 4.040115e-02	k: 12710	n:320000
KS ci ratio: 7.130472e-02	ci left: 9.022500e-03	ci right 9.692681e-03	k: 2993	n:320000
RPN2   320000 perm   114 sec   (2812 perm/sec)   p_kst 9.353125e-03   p_cons 3.971875e-02   p_joint 2.893750e-03

Joint ci ratio: 1.276058e-01	ci left: 2.669512e-03	ci right 3.036274e-03	k: 940	n:330000
Cons ci ratio: 3.353183e-02	ci left: 3.909948e-02	ci right 4.043589e-02	k: 13122	n:330000
KS ci ratio: 7.029148e-02	ci left: 9.008057e-03	ci right 9.667269e-03	k: 3080	n:330000
RPN2   330000 perm   119 sec   (2779 perm/sec)   p_kst 9.333333e-03   p_cons 3.976364e-02   p_joint 2.848485e-03

Joint ci ratio: 1.197613e-01	ci left: 2.953006e-03	ci right 3.332012e-03	k: 1067	n:340000
Cons ci ratio: 3.306391e-02	ci left: 3.904323e-02	ci right 4.035875e-02	k: 13497	n:340000
KS ci ratio: 6.916614e-02	ci left: 9.034998e-03	ci right 9.685171e-03	k: 3181	n:340000
RPN2   340000 perm   124 sec   (2745 perm/sec)   p_kst 9.355882e-03   p_cons 3.969706e-02   p_joint 3.138235e-03

Joint ci ratio: 1.180602e-01	ci left: 2.954571e-03	ci right 3.328016e-03	k: 1098	n:350000
Cons ci ratio: 3.258082e-02	ci left: 3.906969e-02	ci right 4.036651e-02	k: 13900	n:350000
KS ci ratio: 6.795748e-02	ci left: 9.096995e-03	ci right 9.739738e-03	k: 3295	n:350000
RPN2   350000 perm   129 sec   (2713 perm/sec)   p_kst 9.414286e-03   p_cons 3.971429e-02   p_joint 3.137143e-03

Joint ci ratio: 1.162749e-01	ci left: 2.964177e-03	ci right 3.332781e-03	k: 1132	n:360000
Cons ci ratio: 3.211948e-02	ci left: 3.909207e-02	ci right 4.037091e-02	k: 14302	n:360000
KS ci ratio: 6.708865e-02	ci left: 9.079153e-03	ci right 9.712115e-03	k: 3381	n:360000
RPN2   360000 perm   134 sec   (2681 perm/sec)   p_kst 9.391667e-03   p_cons 3.972778e-02   p_joint 3.144444e-03

Joint ci ratio: 1.216766e-01	ci left: 2.627050e-03	ci right 2.970000e-03	k: 1034	n:370000
Cons ci ratio: 3.168393e-02	ci left: 3.909726e-02	ci right 4.035861e-02	k: 14698	n:370000
KS ci ratio: 6.628126e-02	ci left: 9.054350e-03	ci right 9.677695e-03	k: 3464	n:370000
RPN2   370000 perm   140 sec   (2648 perm/sec)   p_kst 9.362162e-03   p_cons 3.972432e-02   p_joint 2.794595e-03

Joint ci ratio: 1.032852e-01	ci left: 3.581213e-03	ci right 3.973782e-03	k: 1434	n:380000
Cons ci ratio: 3.126131e-02	ci left: 3.911273e-02	ci right 4.035746e-02	k: 15098	n:380000
KS ci ratio: 6.527982e-02	ci left: 9.093031e-03	ci right 9.709222e-03	k: 3571	n:380000
RPN2   380000 perm   145 sec   (2619 perm/sec)   p_kst 9.397368e-03   p_cons 3.973158e-02   p_joint 3.773684e-03

Joint ci ratio: 1.019095e-01	ci left: 3.586821e-03	ci right 3.974455e-03	k: 1473	n:390000
Cons ci ratio: 3.086554e-02	ci left: 3.910207e-02	ci right 4.033042e-02	k: 15488	n:390000
KS ci ratio: 6.435776e-02	ci left: 9.119702e-03	ci right 9.728646e-03	k: 3674	n:390000
RPN2   390000 perm   151 sec   (2590 perm/sec)   p_kst 9.420513e-03   p_cons 3.971282e-02   p_joint 3.776923e-03

Joint ci ratio: 1.013295e-01	ci left: 3.538566e-03	ci right 3.918679e-03	k: 1490	n:400000
Cons ci ratio: 3.046745e-02	ci left: 3.913423e-02	ci right 4.034745e-02	k: 15895	n:400000
KS ci ratio: 6.355017e-02	ci left: 9.122951e-03	ci right 9.724187e-03	k: 3768	n:400000
RPN2   400000 perm   156 sec   (2561 perm/sec)   p_kst 9.420000e-03   p_cons 3.973750e-02   p_joint 3.725000e-03

Joint ci ratio: 8.412240e-02	ci left: 5.046600e-03	ci right 5.492143e-03	k: 2159	n:410000
Cons ci ratio: 3.010457e-02	ci left: 3.911406e-02	ci right 4.031197e-02	k: 16281	n:410000
KS ci ratio: 6.278864e-02	ci left: 9.121286e-03	ci right 9.714947e-03	k: 3860	n:410000
RPN2   410000 perm   162 sec   (2534 perm/sec)   p_kst 9.414634e-03   p_cons 3.970976e-02   p_joint 5.265854e-03

Outputting figure to mutsig2_images.part000000000149/RPN2.4_2016_410000_0.0094146_0.03971_0.0052659.png
                gene_name: RPN2
               theta_stop: 0.084 
                    nperm: 410000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.0053 
     ci_joint_bounds_left: 0.0050 
    ci_joint_bounds_right: 0.0055 

Current progress: 52 percent done.
RPRD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
Cons ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
RPRD1B   10000 perm   2 sec   (6603 perm/sec)   p_kst 3.889000e-01   p_cons 5.832000e-01   p_joint 5.305000e-01

Outputting figure to mutsig2_images.part000000000149/RPRD1B.4_1009_10000_0.3889_0.5832_0.5305.png
                gene_name: RPRD1B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 56 percent done.
RPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
KS ci ratio: 1.832994e-02	ci left: 8.129369e-01	ci right 8.280759e-01	k: 8206	n:10000
RPAP1   10000 perm   2 sec   (4805 perm/sec)   p_kst 8.206000e-01   p_cons 4.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPAP1.3_4278_10000_0.8206_0.468_1.png
                gene_name: RPAP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
RPAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
KS ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
RPAP2   10000 perm   2 sec   (6001 perm/sec)   p_kst 9.480000e-01   p_cons 6.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPAP2.3_1891_10000_0.948_0.6036_1.png
                gene_name: RPAP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
RPL30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
Cons ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
KS ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
RPL30   10000 perm   1 sec   (7704 perm/sec)   p_kst 2.460000e-01   p_cons 5.950000e-02   p_joint 4.107000e-01

Joint ci ratio: 3.839233e-02	ci left: 3.360211e-01	ci right 3.492247e-01	k: 6852	n:20000
Cons ci ratio: 1.135347e-01	ci left: 5.304786e-02	ci right 5.948191e-02	k: 1124	n:20000
KS ci ratio: 4.872424e-02	ci left: 2.385064e-01	ci right 2.504680e-01	k: 4889	n:20000
RPL30   20000 perm   3 sec   (6666 perm/sec)   p_kst 2.444500e-01   p_cons 5.620000e-02   p_joint 3.426000e-01

Joint ci ratio: 2.736959e-02	ci left: 4.005021e-01	ci right 4.116494e-01	k: 12182	n:30000
Cons ci ratio: 9.265777e-02	ci left: 5.368549e-02	ci right 5.893419e-02	k: 1688	n:30000
KS ci ratio: 3.987684e-02	ci left: 2.387510e-01	ci right 2.484987e-01	k: 7308	n:30000
RPL30   30000 perm   5 sec   (6227 perm/sec)   p_kst 2.436000e-01   p_cons 5.626667e-02   p_joint 4.060667e-01

Outputting figure to mutsig2_images.part000000000149/RPL30.3_364_30000_0.2436_0.056267_0.40607.png
                gene_name: RPL30
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 68 percent done.
RPL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
KS ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
RPL6   10000 perm   2 sec   (6390 perm/sec)   p_kst 5.290000e-01   p_cons 6.527000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL6.3_891_10000_0.529_0.6527_1.png
                gene_name: RPL6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
RPLP0
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
Cons ci ratio: 6.275439e-03	ci left: 9.718541e-01	ci right 9.780650e-01	k: 9751	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
RPLP0   10000 perm   2 sec   (6362 perm/sec)   p_kst 1.050000e-02   p_cons 9.751000e-01   p_joint 2.860000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 4.290084e-03	ci left: 9.744615e-01	ci right 9.786984e-01	k: 19533	n:20000
KS ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
RPLP0   20000 perm   4 sec   (5598 perm/sec)   p_kst 8.900000e-03   p_cons 9.766500e-01   p_joint 2.115000e-02

Joint ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
Cons ci ratio: 3.530988e-03	ci left: 9.744807e-01	ci right 9.779596e-01	k: 29288	n:30000
KS ci ratio: 2.463869e-01	ci left: 7.335823e-03	ci right 9.427729e-03	k: 250	n:30000
RPLP0   30000 perm   6 sec   (5302 perm/sec)   p_kst 8.333333e-03   p_cons 9.762667e-01   p_joint 1.256667e-02

Joint ci ratio: 1.622941e-01	ci left: 1.320738e-02	ci right 1.556390e-02	k: 574	n:40000
Cons ci ratio: 3.107600e-03	ci left: 9.739375e-01	ci right 9.769929e-01	k: 39020	n:40000
KS ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
RPLP0   40000 perm   8 sec   (5109 perm/sec)   p_kst 8.275000e-03   p_cons 9.755000e-01   p_joint 1.435000e-02

Joint ci ratio: 1.389868e-01	ci left: 1.457062e-02	ci right 1.676614e-02	k: 782	n:50000
Cons ci ratio: 2.785071e-03	ci left: 9.740043e-01	ci right 9.767401e-01	k: 48770	n:50000
KS ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
RPLP0   50000 perm   10 sec   (4954 perm/sec)   p_kst 8.220000e-03   p_cons 9.754000e-01   p_joint 1.564000e-02

Joint ci ratio: 1.271939e-01	ci left: 1.459130e-02	ci right 1.658929e-02	k: 934	n:60000
Cons ci ratio: 2.570350e-03	ci left: 9.735826e-01	ci right 9.761045e-01	k: 58492	n:60000
KS ci ratio: 1.735275e-01	ci left: 7.701206e-03	ci right 9.180266e-03	k: 505	n:60000
RPLP0   60000 perm   12 sec   (4815 perm/sec)   p_kst 8.416667e-03   p_cons 9.748667e-01   p_joint 1.556667e-02

Joint ci ratio: 1.436319e-01	ci left: 9.771883e-03	ci right 1.129767e-02	k: 736	n:70000
Cons ci ratio: 2.379349e-03	ci left: 9.736850e-01	ci right 9.760183e-01	k: 68241	n:70000
KS ci ratio: 1.596134e-01	ci left: 7.860658e-03	ci right 9.237688e-03	k: 597	n:70000
RPLP0   70000 perm   15 sec   (4692 perm/sec)   p_kst 8.528571e-03   p_cons 9.748714e-01   p_joint 1.051429e-02

Joint ci ratio: 1.324060e-01	ci left: 1.011948e-02	ci right 1.156633e-02	k: 866	n:80000
Cons ci ratio: 2.229414e-03	ci left: 9.736775e-01	ci right 9.758628e-01	k: 77983	n:80000
KS ci ratio: 1.467730e-01	ci left: 8.188521e-03	ci right 9.497471e-03	k: 706	n:80000
RPLP0   80000 perm   17 sec   (4587 perm/sec)   p_kst 8.825000e-03   p_cons 9.747875e-01   p_joint 1.082500e-02

Joint ci ratio: 1.247933e-01	ci left: 1.016727e-02	ci right 1.153120e-02	k: 975	n:90000
Cons ci ratio: 2.106071e-03	ci left: 9.736417e-01	ci right 9.757053e-01	k: 87722	n:90000
KS ci ratio: 1.378011e-01	ci left: 8.296720e-03	ci right 9.535243e-03	k: 801	n:90000
RPLP0   90000 perm   20 sec   (4486 perm/sec)   p_kst 8.900000e-03   p_cons 9.746889e-01   p_joint 1.083333e-02

Joint ci ratio: 1.095152e-01	ci left: 1.195676e-02	ci right 1.335172e-02	k: 1264	n:100000
Cons ci ratio: 2.084475e-03	ci left: 9.714778e-01	ci right 9.735147e-01	k: 97251	n:100000
KS ci ratio: 1.298585e-01	ci left: 8.443294e-03	ci right 9.625447e-03	k: 902	n:100000
RPLP0   100000 perm   23 sec   (4392 perm/sec)   p_kst 9.020000e-03   p_cons 9.725100e-01   p_joint 1.264000e-02

Joint ci ratio: 1.117901e-01	ci left: 1.043619e-02	ci right 1.168070e-02	k: 1215	n:110000
Cons ci ratio: 1.991523e-03	ci left: 9.714148e-01	ci right 9.733602e-01	k: 106964	n:110000
KS ci ratio: 1.238971e-01	ci left: 8.459144e-03	ci right 9.585153e-03	k: 991	n:110000
RPLP0   110000 perm   26 sec   (4307 perm/sec)   p_kst 9.009091e-03   p_cons 9.724000e-01   p_joint 1.104545e-02

Joint ci ratio: 1.074224e-01	ci left: 1.038509e-02	ci right 1.157205e-02	k: 1316	n:120000
Cons ci ratio: 1.906419e-03	ci left: 9.714659e-01	ci right 9.733278e-01	k: 116689	n:120000
KS ci ratio: 1.191896e-01	ci left: 8.400601e-03	ci right 9.473333e-03	k: 1071	n:120000
RPLP0   120000 perm   28 sec   (4229 perm/sec)   p_kst 8.925000e-03   p_cons 9.724083e-01   p_joint 1.096667e-02

Joint ci ratio: 8.282590e-02	ci left: 1.623641e-02	ci right 1.764680e-02	k: 2201	n:130000
Cons ci ratio: 1.832156e-03	ci left: 9.714872e-01	ci right 9.732763e-01	k: 126411	n:130000
KS ci ratio: 1.137421e-01	ci left: 8.538604e-03	ci right 9.575780e-03	k: 1176	n:130000
RPLP0   130000 perm   31 sec   (4150 perm/sec)   p_kst 9.046154e-03   p_cons 9.723923e-01   p_joint 1.693077e-02

Joint ci ratio: 9.167018e-02	ci left: 1.230147e-02	ci right 1.349026e-02	k: 1804	n:140000
Cons ci ratio: 1.763832e-03	ci left: 9.715719e-01	ci right 9.732941e-01	k: 136142	n:140000
KS ci ratio: 1.092805e-01	ci left: 8.609200e-03	ci right 9.611289e-03	k: 1274	n:140000
RPLP0   140000 perm   34 sec   (4077 perm/sec)   p_kst 9.100000e-03   p_cons 9.724429e-01   p_joint 1.288571e-02

Joint ci ratio: 8.905125e-02	ci left: 1.218507e-02	ci right 1.332721e-02	k: 1912	n:150000
Cons ci ratio: 1.713613e-03	ci left: 9.712947e-01	ci right 9.729670e-01	k: 145821	n:150000
KS ci ratio: 1.060489e-01	ci left: 8.547724e-03	ci right 9.511398e-03	k: 1353	n:150000
RPLP0   150000 perm   37 sec   (4000 perm/sec)   p_kst 9.020000e-03   p_cons 9.721400e-01   p_joint 1.274667e-02

Joint ci ratio: 8.752602e-02	ci left: 1.183903e-02	ci right 1.292875e-02	k: 1980	n:160000
Cons ci ratio: 1.590627e-03	ci left: 9.735509e-01	ci right 9.751068e-01	k: 155894	n:160000
KS ci ratio: 1.033064e-01	ci left: 8.457776e-03	ci right 9.385151e-03	k: 1426	n:160000
RPLP0   160000 perm   41 sec   (3928 perm/sec)   p_kst 8.912500e-03   p_cons 9.743375e-01   p_joint 1.237500e-02

Joint ci ratio: 8.490890e-02	ci left: 1.185630e-02	ci right 1.291336e-02	k: 2104	n:170000
Cons ci ratio: 1.540650e-03	ci left: 9.736560e-01	ci right 9.751630e-01	k: 165651	n:170000
KS ci ratio: 1.000287e-01	ci left: 8.504885e-03	ci right 9.406099e-03	k: 1521	n:170000
RPLP0   170000 perm   44 sec   (3858 perm/sec)   p_kst 8.947059e-03   p_cons 9.744176e-01   p_joint 1.237647e-02

Joint ci ratio: 8.232653e-02	ci left: 1.192651e-02	ci right 1.295594e-02	k: 2238	n:180000
Cons ci ratio: 1.494760e-03	ci left: 9.737613e-01	ci right 9.752234e-01	k: 175410	n:180000
KS ci ratio: 9.692348e-02	ci left: 8.568859e-03	ci right 9.447063e-03	k: 1620	n:180000
RPLP0   180000 perm   48 sec   (3781 perm/sec)   p_kst 9.000000e-03   p_cons 9.745000e-01   p_joint 1.243333e-02

Outputting figure to mutsig2_images.part000000000149/RPLP0.3_982_180000_0.009_0.9745_0.012433.png
                gene_name: RPLP0
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 76 percent done.
RPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
Cons ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
RPE   10000 perm   1 sec   (7338 perm/sec)   p_kst 1.939000e-01   p_cons 6.252000e-01   p_joint 8.165000e-01

Outputting figure to mutsig2_images.part000000000149/RPE.2_769_10000_0.1939_0.6252_0.8165.png
                gene_name: RPE
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 80 percent done.
RPL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
Cons ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KS ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
RPL10   10000 perm   1 sec   (7047 perm/sec)   p_kst 3.409000e-01   p_cons 1.059000e-01   p_joint 8.520000e-02

Joint ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
Cons ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
KS ci ratio: 3.900968e-02	ci left: 3.289058e-01	ci right 3.420421e-01	k: 6709	n:20000
RPL10   20000 perm   3 sec   (6072 perm/sec)   p_kst 3.354500e-01   p_cons 1.032500e-01   p_joint 9.165000e-02

Outputting figure to mutsig2_images.part000000000149/RPL10.2_669_20000_0.33545_0.10325_0.09165.png
                gene_name: RPL10
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 84 percent done.
RPL19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
KS ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
RPL19   10000 perm   1 sec   (7100 perm/sec)   p_kst 3.986000e-01   p_cons 6.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL19.2_615_10000_0.3986_0.6036_1.png
                gene_name: RPL19
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RPL23A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
RPL23A   10000 perm   1 sec   (7130 perm/sec)   p_kst 4.280000e-02   p_cons 7.081000e-01   p_joint 1.702000e-01

Joint ci ratio: 6.169491e-02	ci left: 1.627434e-01	ci right 1.731534e-01	k: 3358	n:20000
Cons ci ratio: 1.786521e-02	ci left: 7.001344e-01	ci right 7.128055e-01	k: 14130	n:20000
KS ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
RPL23A   20000 perm   3 sec   (6217 perm/sec)   p_kst 4.060000e-02   p_cons 7.065000e-01   p_joint 1.679000e-01

Joint ci ratio: 5.039497e-02	ci left: 1.635870e-01	ci right 1.720774e-01	k: 5034	n:30000
Cons ci ratio: 1.417294e-02	ci left: 7.131722e-01	ci right 7.233855e-01	k: 21549	n:30000
KS ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
RPL23A   30000 perm   5 sec   (5872 perm/sec)   p_kst 4.000000e-02   p_cons 7.183000e-01   p_joint 1.678000e-01

Joint ci ratio: 3.766920e-02	ci left: 2.090210e-01	ci right 2.170707e-01	k: 8521	n:40000
Cons ci ratio: 1.227568e-02	ci left: 7.138133e-01	ci right 7.226550e-01	k: 28730	n:40000
KS ci ratio: 9.518537e-02	ci left: 3.873566e-02	ci right 4.263138e-02	k: 1626	n:40000
RPL23A   40000 perm   7 sec   (5626 perm/sec)   p_kst 4.065000e-02   p_cons 7.182500e-01   p_joint 2.130250e-01

Outputting figure to mutsig2_images.part000000000149/RPL23A.2_491_40000_0.04065_0.71825_0.21302.png
                gene_name: RPL23A
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 92 percent done.
RPL3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
Cons ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
KS ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
RPL3L   10000 perm   2 sec   (6641 perm/sec)   p_kst 1.513000e-01   p_cons 3.305000e-01   p_joint 1.578000e-01

Outputting figure to mutsig2_images.part000000000149/RPL3L.2_1264_10000_0.1513_0.3305_0.1578.png
                gene_name: RPL3L
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 96 percent done.
RPP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.220336e-02	ci left: 7.485708e-01	ci right 7.654792e-01	k: 7571	n:10000
Cons ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
RPP40   10000 perm   1 sec   (6737 perm/sec)   p_kst 3.787000e-01   p_cons 6.183000e-01   p_joint 7.571000e-01

Outputting figure to mutsig2_images.part000000000149/RPP40.2_1124_10000_0.3787_0.6183_0.7571.png
                gene_name: RPP40
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000149
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 149 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1535>
Subject: Job 4422398: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000150> was used as the working directory.
Started at Wed Oct 24 18:06:52 2012
Results reported at Wed Oct 24 18:16:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000150.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000150.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 150  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000150.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    683.65 sec.
    Max Memory :      5321 MB
    Max Swap   :      7767 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
150
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 150
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 150: processing genes 13481 - 13571
Calculating significance of each gene.
Using projection method.
13481	RPS13	1.300091e-01
13482	RPS14	1
13483	RPS15	4.326154e-01
13484	RPS15A	1
13485	RPS16	1
13486	RPS18	3.243095e-01
13487	RPS19	1
13488	RPS19BP1	5.153439e-01
13489	RPS2	1
13490	RPS20	1
13491	RPS21	1
13492	RPS23	1
13493	RPS24	1
13494	RPS25	1
13495	RPS26	2.270562e-01
13496	RPS27	1
13497	RPS27A	1
13498	RPS27L	1.661750e-01
13499	RPS28	1
13500	RPS29	2.128875e-01
13501	RPS3	1
13502	RPS3A	1
13503	RPS4X	1
13504	RPS4Y1	5.903176e-01
13505	RPS4Y2	1
13506	RPS5	1
13507	RPS6	1
13508	RPS6KA1	9.844826e-01
13509	RPS6KA2	4.355915e-01
13510	RPS6KA3	1
13511	RPS6KA4	9.644089e-01
13512	RPS6KA5	4.550138e-01
13513	RPS6KA6	4.083658e-01
13514	RPS6KB1	7.331892e-01
13515	RPS6KB2	8.299209e-01
13516	RPS6KC1	4.353672e-01
13517	RPS6KL1	6.658642e-01
13518	RPS7	1
13519	RPS8	1
13520	RPS9	1
13521	RPSA	6.493633e-01
13522	RPTN	1.501118e-01
13523	RPTOR	9.919631e-01
13524	RPUSD1	1
13525	RPUSD2	9.207056e-01
13526	RPUSD3	7.710039e-01
13527	RPUSD4	3.813532e-01
13528	RQCD1	5.596659e-01
13529	RRAD	2.236254e-01
13530	RRAGA	1
13531	RRAGB	8.737349e-01
13532	RRAGC	6.936271e-01
13533	RRAGD	6.102376e-01
13534	RRAS	4.576732e-01
13535	RRAS2	3.375542e-01
13536	RRBP1	1
13537	RREB1	9.992300e-01
13538	RRH	4.471567e-01
13539	RRM1	8.631490e-01
13540	RRM2	4.626771e-01
13541	RRM2B	1
13542	RRN3	8.433998e-01
13543	RRP1	1
13544	RRP12	1
13545	RRP15	5.025689e-01
13546	RRP1B	9.661697e-01
13547	RRP7A	1
13548	RRP8	8.912204e-01
13549	RRP9	6.270048e-01
13550	RRS1	7.332088e-01
13551	RS1	4.850127e-01
13552	RSAD1	8.374473e-01
13553	RSAD2	5.368588e-02
13554	RSBN1	9.634932e-01
13555	RSBN1L	1
13556	RSC1A1	8.937102e-01
13557	RSF1	9.596108e-01
13558	RSL1D1	7.807225e-01
13559	RSL24D1	1
13560	RSPH1	7.965495e-01
13561	RSPH10B	1
13562	RSPH10B2	8.771970e-01
13563	RSPH3	9.472040e-01
13564	RSPH4A	9.544533e-01
13565	RSPH6A	9.841811e-01
13566	RSPH9	7.823926e-01
13567	RSPO1	1
13568	RSPO2	6.051169e-02
13569	RSPO3	6.817095e-01
13570	RSPO4	5.947357e-02
13571	RSPRY1	8.664107e-01
Done

Running MutSig 2:
Scatter job 150: processing genes 13481 - 13571
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RPTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
RPTN   10000 perm   2 sec   (4752 perm/sec)   p_kst 1.880000e-02   p_cons 9.656000e-01   p_joint 6.590000e-02

Joint ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
Cons ci ratio: 5.627784e-03	ci left: 9.576561e-01	ci right 9.631090e-01	k: 19209	n:20000
KS ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
RPTN   20000 perm   7 sec   (2677 perm/sec)   p_kst 1.785000e-02   p_cons 9.604500e-01   p_joint 5.965000e-02

Joint ci ratio: 8.317542e-02	ci left: 6.605905e-02	ci right 7.182476e-02	k: 2067	n:30000
Cons ci ratio: 4.679196e-03	ci left: 9.567288e-01	ci right 9.612484e-01	k: 28771	n:30000
KS ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
RPTN   30000 perm   10 sec   (2973 perm/sec)   p_kst 1.686667e-02   p_cons 9.590333e-01   p_joint 6.890000e-02

Joint ci ratio: 6.906895e-02	ci left: 7.194519e-02	ci right 7.711678e-02	k: 2980	n:40000
Cons ci ratio: 3.806458e-03	ci left: 9.617950e-01	ci right 9.654873e-01	k: 38547	n:40000
KS ci ratio: 1.490401e-01	ci left: 1.573174e-02	ci right 1.828907e-02	k: 679	n:40000
RPTN   40000 perm   13 sec   (3141 perm/sec)   p_kst 1.697500e-02   p_cons 9.636750e-01   p_joint 7.450000e-02

Joint ci ratio: 6.927771e-02	ci left: 5.809136e-02	ci right 6.227989e-02	k: 3008	n:50000
Cons ci ratio: 3.358204e-03	ci left: 9.629635e-01	ci right 9.662223e-01	k: 48231	n:50000
KS ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
RPTN   50000 perm   15 sec   (3229 perm/sec)   p_kst 1.730000e-02   p_cons 9.646200e-01   p_joint 6.016000e-02

Joint ci ratio: 6.890236e-02	ci left: 4.941704e-02	ci right 5.295986e-02	k: 3070	n:60000
Cons ci ratio: 3.047631e-03	ci left: 9.635155e-01	ci right 9.664727e-01	k: 57901	n:60000
KS ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
RPTN   60000 perm   18 sec   (3280 perm/sec)   p_kst 1.698333e-02   p_cons 9.650167e-01   p_joint 5.116667e-02

Joint ci ratio: 6.261949e-02	ci left: 5.135178e-02	ci right 5.468540e-02	k: 3710	n:70000
Cons ci ratio: 2.827537e-03	ci left: 9.634810e-01	ci right 9.662231e-01	k: 67541	n:70000
KS ci ratio: 1.114323e-01	ci left: 1.640258e-02	ci right 1.835201e-02	k: 1215	n:70000
RPTN   70000 perm   21 sec   (3308 perm/sec)   p_kst 1.735714e-02   p_cons 9.648714e-01   p_joint 5.300000e-02

Joint ci ratio: 5.935622e-02	ci left: 5.016337e-02	ci right 5.324425e-02	k: 4135	n:80000
Cons ci ratio: 2.647646e-03	ci left: 9.634998e-01	ci right 9.660664e-01	k: 77184	n:80000
KS ci ratio: 1.045311e-01	ci left: 1.637123e-02	ci right 1.818902e-02	k: 1381	n:80000
RPTN   80000 perm   24 sec   (3321 perm/sec)   p_kst 1.726250e-02   p_cons 9.648000e-01   p_joint 5.168750e-02

Joint ci ratio: 6.086654e-02	ci left: 4.271303e-02	ci right 4.540535e-02	k: 3964	n:90000
Cons ci ratio: 2.498223e-03	ci left: 9.635189e-01	ci right 9.659399e-01	k: 86827	n:90000
KS ci ratio: 9.806465e-02	ci left: 1.658829e-02	ci right 1.830968e-02	k: 1569	n:90000
RPTN   90000 perm   27 sec   (3319 perm/sec)   p_kst 1.743333e-02   p_cons 9.647444e-01   p_joint 4.404444e-02

Outputting figure to mutsig2_images.part000000000150/RPTN.14_2363_90000_0.017433_0.96474_0.044044.png
                gene_name: RPTN
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 3 percent done.
RPS6KA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
Cons ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
KS ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
RPS6KA2   10000 perm   2 sec   (5199 perm/sec)   p_kst 6.182000e-01   p_cons 4.158000e-01   p_joint 7.906000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA2.7_2417_10000_0.6182_0.4158_0.7906.png
                gene_name: RPS6KA2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 6 percent done.
RREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
RREB1   10000 perm   3 sec   (3814 perm/sec)   p_kst 1.860000e-02   p_cons 2.158000e-01   p_joint 3.910000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 5.450965e-02	ci left: 1.998192e-01	ci right 2.110666e-01	k: 4108	n:20000
KS ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
RREB1   20000 perm   6 sec   (3542 perm/sec)   p_kst 1.880000e-02   p_cons 2.054000e-01   p_joint 3.690000e-02

Joint ci ratio: 1.176796e-01	ci left: 3.356407e-02	ci right 3.779314e-02	k: 1069	n:30000
Cons ci ratio: 4.447307e-02	ci left: 2.011049e-01	ci right 2.102855e-01	k: 6170	n:30000
KS ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
RREB1   30000 perm   9 sec   (3426 perm/sec)   p_kst 1.756667e-02   p_cons 2.056667e-01   p_joint 3.563333e-02

Joint ci ratio: 9.229595e-02	ci left: 4.115501e-02	ci right 4.516165e-02	k: 1725	n:40000
Cons ci ratio: 3.864204e-02	ci left: 2.006557e-01	ci right 2.085872e-01	k: 8184	n:40000
KS ci ratio: 1.467515e-01	ci left: 1.623762e-02	ci right 1.883310e-02	k: 700	n:40000
RREB1   40000 perm   12 sec   (3335 perm/sec)   p_kst 1.750000e-02   p_cons 2.046000e-01   p_joint 4.312500e-02

Joint ci ratio: 8.878948e-02	ci left: 3.585165e-02	ci right 3.920232e-02	k: 1875	n:50000
Cons ci ratio: 3.461625e-02	ci left: 2.005745e-01	ci right 2.076599e-01	k: 10205	n:50000
KS ci ratio: 1.305217e-01	ci left: 1.656229e-02	ci right 1.889418e-02	k: 885	n:50000
RREB1   50000 perm   15 sec   (3251 perm/sec)   p_kst 1.770000e-02   p_cons 2.041000e-01   p_joint 3.750000e-02

Joint ci ratio: 7.622524e-02	ci left: 4.060518e-02	ci right 4.383929e-02	k: 2532	n:60000
Cons ci ratio: 3.233357e-02	ci left: 1.935755e-01	ci right 1.999539e-01	k: 11805	n:60000
KS ci ratio: 1.183700e-01	ci left: 1.688649e-02	ci right 1.902717e-02	k: 1076	n:60000
RREB1   60000 perm   19 sec   (3201 perm/sec)   p_kst 1.793333e-02   p_cons 1.967500e-01   p_joint 4.220000e-02

Joint ci ratio: 7.668508e-02	ci left: 3.460404e-02	ci right 3.737745e-02	k: 2518	n:70000
Cons ci ratio: 2.988198e-02	ci left: 1.943716e-01	ci right 2.002821e-01	k: 13812	n:70000
KS ci ratio: 1.097452e-01	ci left: 1.691677e-02	ci right 1.889491e-02	k: 1252	n:70000
RREB1   70000 perm   22 sec   (3150 perm/sec)   p_kst 1.788571e-02   p_cons 1.973143e-01   p_joint 3.597143e-02

Joint ci ratio: 8.122882e-02	ci left: 2.713726e-02	ci right 2.944712e-02	k: 2262	n:80000
Cons ci ratio: 2.791492e-02	ci left: 1.949823e-01	ci right 2.005147e-01	k: 15819	n:80000
KS ci ratio: 1.030980e-01	ci left: 1.683410e-02	ci right 1.867611e-02	k: 1419	n:80000
RREB1   80000 perm   26 sec   (3104 perm/sec)   p_kst 1.773750e-02   p_cons 1.977375e-01   p_joint 2.827500e-02

Joint ci ratio: 8.220240e-02	ci left: 2.363044e-02	ci right 2.566702e-02	k: 2217	n:90000
Cons ci ratio: 2.627107e-02	ci left: 1.957103e-01	ci right 2.009313e-01	k: 17848	n:90000
KS ci ratio: 9.762259e-02	ci left: 1.674011e-02	ci right 1.846896e-02	k: 1583	n:90000
RREB1   90000 perm   29 sec   (3059 perm/sec)   p_kst 1.758889e-02   p_cons 1.983111e-01   p_joint 2.463333e-02

Outputting figure to mutsig2_images.part000000000150/RREB1.7_5269_90000_0.017589_0.19831_0.024633.png
                gene_name: RREB1
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 8 percent done.
RPS6KC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
Cons ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
KS ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
RPS6KC1   10000 perm   2 sec   (4655 perm/sec)   p_kst 2.395000e-01   p_cons 8.694000e-01   p_joint 4.727000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KC1.6_3261_10000_0.2395_0.8694_0.4727.png
                gene_name: RPS6KC1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 11 percent done.
RSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
RSF1   10000 perm   2 sec   (4136 perm/sec)   p_kst 6.650000e-02   p_cons 9.300000e-02   p_joint 5.180000e-02

Joint ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
Cons ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
KS ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
RSF1   20000 perm   5 sec   (3749 perm/sec)   p_kst 7.000000e-02   p_cons 1.065500e-01   p_joint 4.620000e-02

Joint ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
Cons ci ratio: 6.595802e-02	ci left: 1.018484e-01	ci right 1.088283e-01	k: 3159	n:30000
KS ci ratio: 8.296020e-02	ci left: 6.638595e-02	ci right 7.216447e-02	k: 2077	n:30000
RSF1   30000 perm   8 sec   (3604 perm/sec)   p_kst 6.923333e-02   p_cons 1.053000e-01   p_joint 4.506667e-02

Joint ci ratio: 6.140007e-02	ci left: 8.962854e-02	ci right 9.533078e-02	k: 3698	n:40000
Cons ci ratio: 5.723037e-02	ci left: 1.019627e-01	ci right 1.079948e-01	k: 4198	n:40000
KS ci ratio: 7.031281e-02	ci left: 6.955928e-02	ci right 7.465305e-02	k: 2883	n:40000
RSF1   40000 perm   11 sec   (3503 perm/sec)   p_kst 7.207500e-02   p_cons 1.049500e-01   p_joint 9.245000e-02

Outputting figure to mutsig2_images.part000000000150/RSF1.6_4390_40000_0.072075_0.10495_0.09245.png
                gene_name: RSF1
               theta_stop: 0.070 
                    nperm: 40000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 14 percent done.
RPS6KA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
RPS6KA6   10000 perm   2 sec   (5112 perm/sec)   p_kst 2.694000e-01   p_cons 6.894000e-01   p_joint 5.514000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA6.5_2326_10000_0.2694_0.6894_0.5514.png
                gene_name: RPS6KA6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 17 percent done.
RPUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
KS ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
RPUSD4   10000 perm   2 sec   (5731 perm/sec)   p_kst 9.580000e-02   p_cons 9.655000e-01   p_joint 2.306000e-01

Joint ci ratio: 4.809296e-02	ci left: 2.433163e-01	ci right 2.553567e-01	k: 4986	n:20000
Cons ci ratio: 5.367418e-03	ci left: 9.612214e-01	ci right 9.664426e-01	k: 19278	n:20000
KS ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
RPUSD4   20000 perm   4 sec   (5078 perm/sec)   p_kst 9.535000e-02   p_cons 9.639000e-01   p_joint 2.493000e-01

Outputting figure to mutsig2_images.part000000000150/RPUSD4.5_1162_20000_0.09535_0.9639_0.2493.png
                gene_name: RPUSD4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 19 percent done.
RRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
RRM1   10000 perm   2 sec   (5323 perm/sec)   p_kst 4.481000e-01   p_cons 2.740000e-01   p_joint 4.219000e-01

Outputting figure to mutsig2_images.part000000000150/RRM1.5_2455_10000_0.4481_0.274_0.4219.png
                gene_name: RRM1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 22 percent done.
RSAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.773313e-02	ci left: 6.570614e-01	ci right 6.756416e-01	k: 6664	n:10000
Cons ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
KS ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
RSAD2   10000 perm   2 sec   (5724 perm/sec)   p_kst 7.234000e-01   p_cons 2.952000e-01   p_joint 6.664000e-01

Outputting figure to mutsig2_images.part000000000150/RSAD2.5_1110_10000_0.7234_0.2952_0.6664.png
                gene_name: RSAD2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 25 percent done.
RPS6KA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
KS ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
RPS6KA5   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.641000e-01   p_cons 9.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RPS6KA5.4_2483_10000_0.7641_0.9499_1.png
                gene_name: RPS6KA5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
RPTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
RPTOR   10000 perm   2 sec   (4671 perm/sec)   p_kst 5.818000e-01   p_cons 2.350000e-02   p_joint 2.341000e-01

Joint ci ratio: 5.250553e-02	ci left: 2.121950e-01	ci right 2.236871e-01	k: 4358	n:20000
Cons ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
KS ci ratio: 2.336415e-02	ci left: 5.777335e-01	ci right 5.914419e-01	k: 11692	n:20000
RPTOR   20000 perm   5 sec   (4142 perm/sec)   p_kst 5.846000e-01   p_cons 2.635000e-02   p_joint 2.179000e-01

Joint ci ratio: 5.438752e-02	ci left: 1.435709e-01	ci right 1.516308e-01	k: 4427	n:30000
Cons ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
KS ci ratio: 1.883721e-02	ci left: 5.851441e-01	ci right 5.963050e-01	k: 17722	n:30000
RPTOR   30000 perm   8 sec   (3963 perm/sec)   p_kst 5.907333e-01   p_cons 2.196667e-02   p_joint 1.475667e-01

Joint ci ratio: 4.623168e-02	ci left: 1.488164e-01	ci right 1.558841e-01	k: 6093	n:40000
Cons ci ratio: 1.305284e-01	ci left: 2.060901e-02	ci right 2.351095e-02	k: 881	n:40000
KS ci ratio: 1.643060e-02	ci left: 5.824316e-01	ci right 5.921057e-01	k: 23491	n:40000
RPTOR   40000 perm   10 sec   (3852 perm/sec)   p_kst 5.872750e-01   p_cons 2.202500e-02   p_joint 1.523250e-01

Joint ci ratio: 4.364895e-02	ci left: 1.358598e-01	ci right 1.419422e-01	k: 6944	n:50000
Cons ci ratio: 1.169383e-01	ci left: 2.069324e-02	ci right 2.328267e-02	k: 1098	n:50000
KS ci ratio: 1.468196e-02	ci left: 5.834104e-01	ci right 5.920594e-01	k: 29387	n:50000
RPTOR   50000 perm   13 sec   (3759 perm/sec)   p_kst 5.877400e-01   p_cons 2.196000e-02   p_joint 1.388800e-01

Joint ci ratio: 4.281160e-02	ci left: 1.199691e-01	ci right 1.252341e-01	k: 7355	n:60000
Cons ci ratio: 1.071158e-01	ci left: 2.066261e-02	ci right 2.301729e-02	k: 1309	n:60000
KS ci ratio: 1.339744e-02	ci left: 5.839824e-01	ci right 5.918757e-01	k: 35276	n:60000
RPTOR   60000 perm   16 sec   (3665 perm/sec)   p_kst 5.879333e-01   p_cons 2.181667e-02   p_joint 1.225833e-01

Joint ci ratio: 3.962798e-02	ci left: 1.202072e-01	ci right 1.250813e-01	k: 8584	n:70000
Cons ci ratio: 9.888379e-02	ci left: 2.087032e-02	ci right 2.305527e-02	k: 1536	n:70000
KS ci ratio: 1.237856e-02	ci left: 5.852586e-01	ci right 5.925626e-01	k: 41224	n:70000
RPTOR   70000 perm   19 sec   (3594 perm/sec)   p_kst 5.889143e-01   p_cons 2.194286e-02   p_joint 1.226286e-01

Outputting figure to mutsig2_images.part000000000150/RPTOR.4_4144_70000_0.58891_0.021943_0.12263.png
                gene_name: RPTOR
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 31 percent done.
RRAGD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
Cons ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
KS ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
RRAGD   10000 perm   2 sec   (6036 perm/sec)   p_kst 1.494000e-01   p_cons 1.730000e-02   p_joint 5.650000e-02

Joint ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
Cons ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
KS ci ratio: 6.621623e-02	ci left: 1.441405e-01	ci right 1.540617e-01	k: 2981	n:20000
RRAGD   20000 perm   4 sec   (5304 perm/sec)   p_kst 1.490500e-01   p_cons 1.735000e-02   p_joint 3.610000e-02

Joint ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
Cons ci ratio: 1.714134e-01	ci left: 1.566320e-02	ci right 1.863136e-02	k: 513	n:30000
KS ci ratio: 5.427971e-02	ci left: 1.440652e-01	ci right 1.521364e-01	k: 4442	n:30000
RRAGD   30000 perm   6 sec   (5028 perm/sec)   p_kst 1.480667e-01   p_cons 1.710000e-02   p_joint 4.143333e-02

Joint ci ratio: 8.417825e-02	ci left: 4.925621e-02	ci right 5.360921e-02	k: 2056	n:40000
Cons ci ratio: 1.485961e-01	ci left: 1.582807e-02	ci right 1.839272e-02	k: 683	n:40000
KS ci ratio: 4.573252e-02	ci left: 1.516146e-01	ci right 1.587355e-01	k: 6206	n:40000
RRAGD   40000 perm   8 sec   (4850 perm/sec)   p_kst 1.551500e-01   p_cons 1.707500e-02   p_joint 5.140000e-02

Joint ci ratio: 7.318856e-02	ci left: 5.227068e-02	ci right 5.626127e-02	k: 2712	n:50000
Cons ci ratio: 1.337870e-01	ci left: 1.574962e-02	ci right 1.802697e-02	k: 843	n:50000
KS ci ratio: 4.102895e-02	ci left: 1.512033e-01	ci right 1.575569e-01	k: 7718	n:50000
RRAGD   50000 perm   11 sec   (4718 perm/sec)   p_kst 1.543600e-01   p_cons 1.686000e-02   p_joint 5.424000e-02

Joint ci ratio: 5.549141e-02	ci left: 7.464867e-02	ci right 7.892571e-02	k: 4606	n:60000
Cons ci ratio: 1.227981e-01	ci left: 1.567358e-02	ci right 1.774022e-02	k: 1001	n:60000
KS ci ratio: 3.777248e-02	ci left: 1.493012e-01	ci right 1.550658e-01	k: 9130	n:60000
RRAGD   60000 perm   13 sec   (4586 perm/sec)   p_kst 1.521667e-01   p_cons 1.668333e-02   p_joint 7.676667e-02

Joint ci ratio: 6.739617e-02	ci left: 4.454418e-02	ci right 4.766501e-02	k: 3226	n:70000
Cons ci ratio: 1.139870e-01	ci left: 1.566644e-02	ci right 1.757393e-02	k: 1162	n:70000
KS ci ratio: 3.491805e-02	ci left: 1.499008e-01	ci right 1.552423e-01	k: 10679	n:70000
RRAGD   70000 perm   16 sec   (4484 perm/sec)   p_kst 1.525571e-01   p_cons 1.660000e-02   p_joint 4.608571e-02

Joint ci ratio: 5.142559e-02	ci left: 6.596854e-02	ci right 6.946289e-02	k: 5416	n:80000
Cons ci ratio: 1.107262e-01	ci left: 1.457023e-02	ci right 1.629017e-02	k: 1233	n:80000
KS ci ratio: 3.296089e-02	ci left: 1.477556e-01	ci right 1.527198e-01	k: 12018	n:80000
RRAGD   80000 perm   18 sec   (4389 perm/sec)   p_kst 1.502250e-01   p_cons 1.541250e-02   p_joint 6.770000e-02

Joint ci ratio: 4.814277e-02	ci left: 6.695695e-02	ci right 7.027092e-02	k: 6174	n:90000
Cons ci ratio: 1.045180e-01	ci left: 1.458396e-02	ci right 1.620305e-02	k: 1384	n:90000
KS ci ratio: 3.101025e-02	ci left: 1.484347e-01	ci right 1.531212e-01	k: 13569	n:90000
RRAGD   90000 perm   21 sec   (4295 perm/sec)   p_kst 1.507667e-01   p_cons 1.537778e-02   p_joint 6.860000e-02

Joint ci ratio: 4.813313e-02	ci left: 6.070091e-02	ci right 6.370455e-02	k: 6219	n:100000
Cons ci ratio: 9.938072e-02	ci left: 1.455808e-02	ci right 1.609022e-02	k: 1531	n:100000
KS ci ratio: 2.939341e-02	ci left: 1.487760e-01	ci right 1.532242e-01	k: 15099	n:100000
RRAGD   100000 perm   24 sec   (4208 perm/sec)   p_kst 1.509900e-01   p_cons 1.531000e-02   p_joint 6.219000e-02

Outputting figure to mutsig2_images.part000000000150/RRAGD.4_1231_100000_0.15099_0.01531_0.06219.png
                gene_name: RRAGD
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 33 percent done.
RRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
Cons ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
RRM2   10000 perm   2 sec   (5931 perm/sec)   p_kst 3.728000e-01   p_cons 6.220000e-02   p_joint 2.344000e-01

Joint ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
Cons ci ratio: 1.088451e-01	ci left: 5.757595e-02	ci right 6.425241e-02	k: 1217	n:20000
KS ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
RRM2   20000 perm   4 sec   (5221 perm/sec)   p_kst 3.676000e-01   p_cons 6.085000e-02   p_joint 1.629500e-01

Joint ci ratio: 4.704522e-02	ci left: 1.834934e-01	ci right 1.923671e-01	k: 5637	n:30000
Cons ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
KS ci ratio: 3.017187e-02	ci left: 3.545987e-01	ci right 3.654951e-01	k: 10801	n:30000
RRM2   30000 perm   6 sec   (4955 perm/sec)   p_kst 3.600333e-01   p_cons 6.470000e-02   p_joint 1.879000e-01

Outputting figure to mutsig2_images.part000000000150/RRM2.4_1390_30000_0.36003_0.0647_0.1879.png
                gene_name: RRM2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 36 percent done.
RRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
RRP12   10000 perm   2 sec   (4555 perm/sec)   p_kst 7.067000e-01   p_cons 5.621000e-01   p_joint 8.231000e-01

Outputting figure to mutsig2_images.part000000000150/RRP12.4_4030_10000_0.7067_0.5621_0.8231.png
                gene_name: RRP12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 39 percent done.
RSPH10B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
RSPH10B2   10000 perm   3 sec   (3752 perm/sec)   p_kst 8.722000e-01   p_cons 1.290000e-01   p_joint 3.944000e-01

Joint ci ratio: 3.234399e-02	ci left: 4.165388e-01	ci right 4.302834e-01	k: 8468	n:20000
Cons ci ratio: 6.993803e-02	ci left: 1.309819e-01	ci right 1.405243e-01	k: 2714	n:20000
KS ci ratio: 1.066832e-02	ci left: 8.662755e-01	ci right 8.756164e-01	k: 17420	n:20000
RSPH10B2   20000 perm   6 sec   (3577 perm/sec)   p_kst 8.710000e-01   p_cons 1.357000e-01   p_joint 4.234000e-01

Outputting figure to mutsig2_images.part000000000150/RSPH10B2.4_5378_20000_0.871_0.1357_0.4234.png
                gene_name: RSPH10B2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 42 percent done.
RSPH6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
KS ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
RSPH6A   10000 perm   2 sec   (5491 perm/sec)   p_kst 2.462000e-01   p_cons 3.830000e-02   p_joint 1.562000e-01

Joint ci ratio: 6.151890e-02	ci left: 1.635334e-01	ci right 1.739631e-01	k: 3374	n:20000
Cons ci ratio: 1.372254e-01	ci left: 3.650420e-02	ci right 4.193082e-02	k: 783	n:20000
KS ci ratio: 4.861240e-02	ci left: 2.393493e-01	ci right 2.513248e-01	k: 4906	n:20000
RSPH6A   20000 perm   4 sec   (4878 perm/sec)   p_kst 2.453000e-01   p_cons 3.915000e-02   p_joint 1.687000e-01

Joint ci ratio: 6.602811e-02	ci left: 1.016513e-01	ci right 1.086254e-01	k: 3153	n:30000
Cons ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
KS ci ratio: 3.995272e-02	ci left: 2.380558e-01	ci right 2.477941e-01	k: 7287	n:30000
RSPH6A   30000 perm   6 sec   (4653 perm/sec)   p_kst 2.429000e-01   p_cons 4.303333e-02   p_joint 1.051000e-01

Joint ci ratio: 6.742117e-02	ci left: 7.529172e-02	ci right 8.056975e-02	k: 3116	n:40000
Cons ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
KS ci ratio: 3.465508e-02	ci left: 2.381322e-01	ci right 2.465552e-01	k: 9693	n:40000
RSPH6A   40000 perm   9 sec   (4492 perm/sec)   p_kst 2.423250e-01   p_cons 4.100000e-02   p_joint 7.790000e-02

Outputting figure to mutsig2_images.part000000000150/RSPH6A.4_2178_40000_0.24233_0.041_0.0779.png
                gene_name: RSPH6A
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 44 percent done.
RSPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.740949e-02	ci left: 6.622964e-01	ci right 6.808035e-01	k: 6716	n:10000
KS ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
RSPO2   10000 perm   2 sec   (6299 perm/sec)   p_kst 6.266000e-01   p_cons 6.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RSPO2.4_752_10000_0.6266_0.6716_1.png
                gene_name: RSPO2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
RSPRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
KS ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
RSPRY1   10000 perm   2 sec   (5685 perm/sec)   p_kst 1.118000e-01   p_cons 4.296000e-01   p_joint 1.388000e-01

Joint ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
Cons ci ratio: 3.220528e-02	ci left: 4.186341e-01	ci right 4.323876e-01	k: 8510	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
RSPRY1   20000 perm   4 sec   (5016 perm/sec)   p_kst 1.077500e-01   p_cons 4.255000e-01   p_joint 9.965000e-02

Outputting figure to mutsig2_images.part000000000150/RSPRY1.4_1787_20000_0.10775_0.4255_0.09965.png
                gene_name: RSPRY1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 50 percent done.
RPS6KL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
Cons ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
KS ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
RPS6KL1   10000 perm   2 sec   (6107 perm/sec)   p_kst 3.579000e-01   p_cons 5.706000e-01   p_joint 7.821000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KL1.3_1666_10000_0.3579_0.5706_0.7821.png
                gene_name: RPS6KL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 53 percent done.
RQCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
Cons ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
KS ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
RQCD1   10000 perm   2 sec   (6411 perm/sec)   p_kst 4.263000e-01   p_cons 7.517000e-01   p_joint 5.171000e-01

Outputting figure to mutsig2_images.part000000000150/RQCD1.3_931_10000_0.4263_0.7517_0.5171.png
                gene_name: RQCD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
RRAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
Cons ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
RRAD   10000 perm   1 sec   (6717 perm/sec)   p_kst 1.233000e-01   p_cons 2.790000e-02   p_joint 3.249000e-01

Joint ci ratio: 5.203265e-02	ci left: 2.152655e-01	ci right 2.268157e-01	k: 4420	n:20000
Cons ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
KS ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
RRAD   20000 perm   3 sec   (5814 perm/sec)   p_kst 1.232500e-01   p_cons 2.980000e-02   p_joint 2.210000e-01

Joint ci ratio: 5.863393e-02	ci left: 1.258517e-01	ci right 1.334869e-01	k: 3889	n:30000
Cons ci ratio: 1.295830e-01	ci left: 2.767889e-02	ci right 3.154626e-02	k: 887	n:30000
KS ci ratio: 6.014435e-02	ci left: 1.202904e-01	ci right 1.277826e-01	k: 3720	n:30000
RRAD   30000 perm   6 sec   (5417 perm/sec)   p_kst 1.240000e-01   p_cons 2.956667e-02   p_joint 1.296333e-01

Joint ci ratio: 4.832719e-02	ci left: 1.378258e-01	ci right 1.446764e-01	k: 5649	n:40000
Cons ci ratio: 1.119307e-01	ci left: 2.808243e-02	ci right 3.143630e-02	k: 1189	n:40000
KS ci ratio: 5.098589e-02	ci left: 1.254576e-01	ci right 1.320464e-01	k: 5149	n:40000
RRAD   40000 perm   8 sec   (5209 perm/sec)   p_kst 1.287250e-01   p_cons 2.972500e-02   p_joint 1.412250e-01

Joint ci ratio: 4.150047e-02	ci left: 1.482685e-01	ci right 1.545720e-01	k: 7570	n:50000
Cons ci ratio: 1.007264e-01	ci left: 2.791720e-02	ci right 3.089777e-02	k: 1469	n:50000
KS ci ratio: 4.560122e-02	ci left: 1.258160e-01	ci right 1.317071e-01	k: 6437	n:50000
RRAD   50000 perm   10 sec   (5043 perm/sec)   p_kst 1.287400e-01   p_cons 2.938000e-02   p_joint 1.514000e-01

Joint ci ratio: 3.786792e-02	ci left: 1.486563e-01	ci right 1.544108e-01	k: 9091	n:60000
Cons ci ratio: 9.178967e-02	ci left: 2.814428e-02	ci right 3.086815e-02	k: 1769	n:60000
KS ci ratio: 4.166708e-02	ci left: 1.258650e-01	ci right 1.312376e-01	k: 7712	n:60000
RRAD   60000 perm   12 sec   (4905 perm/sec)   p_kst 1.285333e-01   p_cons 2.948333e-02   p_joint 1.515167e-01

Outputting figure to mutsig2_images.part000000000150/RRAD.3_943_60000_0.12853_0.029483_0.15152.png
                gene_name: RRAD
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 58 percent done.
RRP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KS ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
RRP9   10000 perm   2 sec   (6024 perm/sec)   p_kst 5.745000e-01   p_cons 3.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RRP9.3_1488_10000_0.5745_0.3413_1.png
                gene_name: RRP9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
RSPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
Cons ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
KS ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
RSPH3   10000 perm   2 sec   (6127 perm/sec)   p_kst 2.412000e-01   p_cons 3.742000e-01   p_joint 3.416000e-01

Outputting figure to mutsig2_images.part000000000150/RSPH3.3_1715_10000_0.2412_0.3742_0.3416.png
                gene_name: RSPH3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 64 percent done.
RSPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
Cons ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
KS ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
RSPO4   10000 perm   1 sec   (6904 perm/sec)   p_kst 1.520000e-01   p_cons 7.782000e-01   p_joint 3.328000e-01

Outputting figure to mutsig2_images.part000000000150/RSPO4.3_725_10000_0.152_0.7782_0.3328.png
                gene_name: RSPO4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 67 percent done.
RPS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
KS ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
RPS13   10000 perm   1 sec   (7172 perm/sec)   p_kst 7.954000e-01   p_cons 9.848000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RPS13.2_480_10000_0.7954_0.9848_1.png
                gene_name: RPS13
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
RPS6KB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
Cons ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
RPS6KB1   10000 perm   2 sec   (6620 perm/sec)   p_kst 3.093000e-01   p_cons 7.109000e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KB1.2_1638_10000_0.3093_0.7109_0.5065.png
                gene_name: RPS6KB1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 72 percent done.
RPS6KB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
Cons ci ratio: 8.765387e-04	ci left: 9.989762e-01	ci right 9.998910e-01	k: 9996	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
RPS6KB2   10000 perm   1 sec   (6759 perm/sec)   p_kst 2.010000e-02   p_cons 9.996000e-01   p_joint 3.730000e-01

Joint ci ratio: 4.877705e-02	ci left: 2.381098e-01	ci right 2.500647e-01	k: 4881	n:20000
Cons ci ratio: 5.880588e-04	ci left: 9.992120e-01	ci right 9.998273e-01	k: 19992	n:20000
KS ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
RPS6KB2   20000 perm   3 sec   (5859 perm/sec)   p_kst 2.015000e-02   p_cons 9.996000e-01   p_joint 2.440500e-01

Joint ci ratio: 3.841771e-02	ci left: 2.526584e-01	ci right 2.625886e-01	k: 7728	n:30000
Cons ci ratio: 4.889833e-04	ci left: 9.992591e-01	ci right 9.997692e-01	k: 29987	n:30000
KS ci ratio: 1.542756e-01	ci left: 1.943940e-02	ci right 2.272093e-02	k: 631	n:30000
RPS6KB2   30000 perm   5 sec   (5515 perm/sec)   p_kst 2.103333e-02   p_cons 9.995667e-01   p_joint 2.576000e-01

Joint ci ratio: 3.257082e-02	ci left: 2.615003e-01	ci right 2.701837e-01	k: 10633	n:40000
Cons ci ratio: 3.795998e-04	ci left: 9.994128e-01	ci right 9.998086e-01	k: 39986	n:40000
KS ci ratio: 1.328574e-01	ci left: 1.988322e-02	ci right 2.273686e-02	k: 851	n:40000
RPS6KB2   40000 perm   8 sec   (5287 perm/sec)   p_kst 2.127500e-02   p_cons 9.996500e-01   p_joint 2.658250e-01

Joint ci ratio: 3.207785e-02	ci left: 2.262773e-01	ci right 2.336741e-01	k: 11498	n:50000
Cons ci ratio: 3.841530e-04	ci left: 9.993099e-01	ci right 9.997084e-01	k: 49977	n:50000
KS ci ratio: 1.187746e-01	ci left: 2.005230e-02	ci right 2.260369e-02	k: 1065	n:50000
RPS6KB2   50000 perm   10 sec   (5128 perm/sec)   p_kst 2.130000e-02   p_cons 9.995400e-01   p_joint 2.299600e-01

Joint ci ratio: 4.706529e-02	ci left: 1.011890e-01	ci right 1.060828e-01	k: 6217	n:60000
Cons ci ratio: 3.331943e-04	ci left: 9.993850e-01	ci right 9.997303e-01	k: 59975	n:60000
KS ci ratio: 1.087829e-01	ci left: 2.002980e-02	ci right 2.235017e-02	k: 1270	n:60000
RPS6KB2   60000 perm   12 sec   (4978 perm/sec)   p_kst 2.116667e-02   p_cons 9.995833e-01   p_joint 1.036167e-01

Joint ci ratio: 4.741894e-02	ci left: 8.682989e-02	ci right 9.106140e-02	k: 6225	n:70000
Cons ci ratio: 3.067794e-04	ci left: 9.994051e-01	ci right 9.997225e-01	k: 69971	n:70000
KS ci ratio: 1.005692e-01	ci left: 2.017348e-02	ci right 2.232360e-02	k: 1486	n:70000
RPS6KB2   70000 perm   14 sec   (4850 perm/sec)   p_kst 2.122857e-02   p_cons 9.995857e-01   p_joint 8.892857e-02

Joint ci ratio: 4.496043e-02	ci left: 8.482069e-02	ci right 8.873434e-02	k: 6941	n:80000
Cons ci ratio: 2.940570e-04	ci left: 9.993916e-01	ci right 9.996952e-01	k: 79965	n:80000
KS ci ratio: 9.397313e-02	ci left: 2.028621e-02	ci right 2.229871e-02	k: 1702	n:80000
RPS6KB2   80000 perm   17 sec   (4729 perm/sec)   p_kst 2.127500e-02   p_cons 9.995625e-01   p_joint 8.676250e-02

Outputting figure to mutsig2_images.part000000000150/RPS6KB2.2_1509_80000_0.021275_0.99956_0.086763.png
                gene_name: RPS6KB2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.089 

Current progress: 75 percent done.
RPUSD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
Cons ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
RPUSD3   10000 perm   1 sec   (6746 perm/sec)   p_kst 7.101000e-01   p_cons 5.007000e-01   p_joint 9.048000e-01

Outputting figure to mutsig2_images.part000000000150/RPUSD3.2_1092_10000_0.7101_0.5007_0.9048.png
                gene_name: RPUSD3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 78 percent done.
RRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
RRBP1   10000 perm   2 sec   (5529 perm/sec)   p_kst 6.402000e-01   p_cons 7.070000e-02   p_joint 1.188000e-01

Joint ci ratio: 5.134729e-02	ci left: 2.198225e-01	ci right 2.314574e-01	k: 4512	n:20000
Cons ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
KS ci ratio: 2.068663e-02	ci left: 6.355615e-01	ci right 6.488971e-01	k: 12845	n:20000
RRBP1   20000 perm   4 sec   (4881 perm/sec)   p_kst 6.422500e-01   p_cons 7.075000e-02   p_joint 2.256000e-01

Joint ci ratio: 7.076153e-02	ci left: 8.950676e-02	ci right 9.610568e-02	k: 2783	n:30000
Cons ci ratio: 8.184427e-02	ci left: 6.811878e-02	ci right 7.396462e-02	k: 2130	n:30000
KS ci ratio: 1.678864e-02	ci left: 6.395882e-01	ci right 6.504504e-01	k: 19351	n:30000
RRBP1   30000 perm   6 sec   (4629 perm/sec)   p_kst 6.450333e-01   p_cons 7.100000e-02   p_joint 9.276667e-02

Outputting figure to mutsig2_images.part000000000150/RRBP1.2_3030_30000_0.64503_0.071_0.092767.png
                gene_name: RRBP1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 81 percent done.
RRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.308130e-03	ci left: 9.421155e-01	ci right 9.510221e-01	k: 9467	n:10000
Cons ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
KS ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
RRH   10000 perm   1 sec   (6712 perm/sec)   p_kst 9.143000e-01   p_cons 6.493000e-01   p_joint 9.467000e-01

Outputting figure to mutsig2_images.part000000000150/RRH.2_1042_10000_0.9143_0.6493_0.9467.png
                gene_name: RRH
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 83 percent done.
RRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
RRN3   10000 perm   2 sec   (6065 perm/sec)   p_kst 5.870000e-01   p_cons 3.428000e-01   p_joint 4.578000e-01

Outputting figure to mutsig2_images.part000000000150/RRN3.2_2028_10000_0.587_0.3428_0.4578.png
                gene_name: RRN3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 86 percent done.
RRP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
KS ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
RRP15   10000 perm   1 sec   (6831 perm/sec)   p_kst 9.840000e-01   p_cons 7.426000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RRP15.2_869_10000_0.984_0.7426_1.png
                gene_name: RRP15
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
RSBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
Cons ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
KS ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
RSBN1   10000 perm   2 sec   (5818 perm/sec)   p_kst 1.891000e-01   p_cons 5.982000e-01   p_joint 6.393000e-01

Outputting figure to mutsig2_images.part000000000150/RSBN1.2_2437_10000_0.1891_0.5982_0.6393.png
                gene_name: RSBN1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 92 percent done.
RSBN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
RSBN1L   10000 perm   2 sec   (5738 perm/sec)   p_kst 4.678000e-01   p_cons 1.219000e-01   p_joint 3.042000e-01

Joint ci ratio: 5.205532e-02	ci left: 2.151169e-01	ci right 2.266644e-01	k: 4417	n:20000
Cons ci ratio: 7.346958e-02	ci left: 1.200034e-01	ci right 1.292060e-01	k: 2491	n:20000
KS ci ratio: 2.923227e-02	ci left: 4.664596e-01	ci right 4.803482e-01	k: 9468	n:20000
RSBN1L   20000 perm   4 sec   (4986 perm/sec)   p_kst 4.734000e-01   p_cons 1.245500e-01   p_joint 2.208500e-01

Outputting figure to mutsig2_images.part000000000150/RSBN1L.2_2573_20000_0.4734_0.12455_0.22085.png
                gene_name: RSBN1L
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 94 percent done.
RSL1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
Cons ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
RSL1D1   10000 perm   2 sec   (6409 perm/sec)   p_kst 5.110000e-02   p_cons 8.106000e-01   p_joint 5.349000e-01

Joint ci ratio: 2.585550e-02	ci left: 5.277576e-01	ci right 5.416323e-01	k: 10694	n:20000
Cons ci ratio: 1.323943e-02	ci left: 8.087896e-01	ci right 8.196189e-01	k: 16285	n:20000
KS ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
RSL1D1   20000 perm   4 sec   (5574 perm/sec)   p_kst 5.240000e-02   p_cons 8.142500e-01   p_joint 5.347000e-01

Joint ci ratio: 2.176646e-02	ci left: 5.137947e-01	ci right 5.251349e-01	k: 15584	n:30000
Cons ci ratio: 1.082592e-02	ci left: 8.093481e-01	ci right 8.181910e-01	k: 24414	n:30000
KS ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
RSL1D1   30000 perm   6 sec   (5249 perm/sec)   p_kst 5.286667e-02   p_cons 8.138000e-01   p_joint 5.194667e-01

Outputting figure to mutsig2_images.part000000000150/RSL1D1.2_1509_30000_0.052867_0.8138_0.51947.png
                gene_name: RSL1D1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 97 percent done.
RSPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
Cons ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
KS ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
RSPO1   10000 perm   1 sec   (7002 perm/sec)   p_kst 7.893000e-01   p_cons 6.284000e-01   p_joint 6.395000e-01

Outputting figure to mutsig2_images.part000000000150/RSPO1.2_812_10000_0.7893_0.6284_0.6395.png
                gene_name: RSPO1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000150
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 150 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 4422404: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000151> was used as the working directory.
Started at Wed Oct 24 18:06:52 2012
Results reported at Wed Oct 24 18:49:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000151.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000151.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 151  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000151.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2662.87 sec.
    Max Memory :      5342 MB
    Max Swap   :      7788 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
151
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 151
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 151: processing genes 13572 - 13661
Calculating significance of each gene.
Using projection method.
13572	RSRC1	3.580880e-01
13573	RSRC2	4.341193e-01
13574	RSU1	8.653199e-01
13575	RTBDN	7.738962e-01
13576	RTCD1	4.659441e-01
13577	RTDR1	1.853811e-01
13578	RTEL1	1
13579	RTF1	1
13580	RTKN	9.221398e-01
13581	RTKN2	8.516503e-01
13582	RTN1	4.091398e-01
13583	RTN2	9.120642e-01
13584	RTN3	8.934584e-01
13585	RTN4	9.511513e-01
13586	RTN4IP1	8.317431e-02
13587	RTN4R	9.597357e-01
13588	RTN4RL1	9.091218e-01
13589	RTN4RL2	1
13590	RTP1	1
13591	RTP2	5.321580e-03
13592	RTP3	1
13593	RTP4	1
13594	RTTN	9.998376e-01
13595	RUFY1	8.138880e-01
13596	RUFY2	7.453521e-02
13597	RUFY3	4.600038e-01
13598	RUFY4	1
13599	RUNDC1	4.355746e-01
13600	RUNDC2A	1
13601	RUNDC3A	1
13602	RUNDC3B	4.526088e-01
13603	RUNX1	9.124043e-01
13604	RUNX1T1	5.447490e-01
13605	RUNX2	3.611750e-01
13606	RUNX3	1
13607	RUSC1	9.949788e-01
13608	RUSC2	9.986555e-01
13609	RUVBL1	8.535034e-01
13610	RUVBL2	6.911607e-01
13611	RWDD1	1
13612	RWDD2A	1
13613	RWDD2B	6.071911e-01
13614	RWDD3	2.615843e-01
13615	RWDD4A	6.731435e-01
In gene RXFP1 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 2346    n = 1	mu =   9.71e-07
13616	RXFP1	8.377960e-01
13617	RXFP2	8.249055e-01
13618	RXFP3	1
13619	RXFP4	7.454040e-01
13620	RXRA	9.412039e-01
13621	RXRB	1
13622	RXRG	4.771233e-02
13623	RYBP	2.794113e-01
13624	RYK	1
13625	RYR1	9.999932e-01
13626	RYR2	1
13627	RYR3	1
13628	S100A1	5.091367e-01
13629	S100A10	1
13630	S100A11	1
13631	S100A12	1
13632	S100A13	2.155459e-01
13633	S100A14	1
13634	S100A16	1
13635	S100A2	1
13636	S100A3	1
13637	S100A4	1.299984e-01
13638	S100A5	1
13639	S100A6	1
13640	S100A7	4.877793e-02
13641	S100A7A	3.886000e-01
13642	S100A7L2	1.262181e-01
13643	S100A8	3.873580e-01
13644	S100A9	1
13645	S100B	1
13646	S100G	1
13647	S100P	1
13648	S100PBP	5.079651e-01
13649	S100Z	1
13650	S1PR1	4.841800e-01
13651	S1PR2	1
13652	S1PR3	5.174783e-02
13653	S1PR4	8.235169e-01
13654	S1PR5	8.548476e-01
13655	SAA1	1
13656	SAA2	4.427951e-01
13657	SAA4	4.487860e-01
13658	SAAL1	6.738879e-02
13659	SAC3D1	1
13660	SACM1L	9.682839e-01
13661	SACS	1.000000e+00
Done

Running MutSig 2:
Scatter job 151: processing genes 13572 - 13661
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RYR2
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
RYR2   10000 perm   17 sec   (577 perm/sec)   p_kst 4.394000e-01   p_cons 2.900000e-03   p_joint 1.710000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
KS ci ratio: 3.159693e-02	ci left: 4.279644e-01	ci right 4.417545e-01	k: 8697	n:20000
RYR2   20000 perm   42 sec   (471 perm/sec)   p_kst 4.348500e-01   p_cons 2.200000e-03   p_joint 6.750000e-03

Joint ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
Cons ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
KS ci ratio: 2.576895e-02	ci left: 4.298126e-01	ci right 4.410666e-01	k: 13063	n:30000
RYR2   30000 perm   59 sec   (508 perm/sec)   p_kst 4.354333e-01   p_cons 2.866667e-03   p_joint 4.100000e-03

Joint ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
Cons ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
KS ci ratio: 2.228439e-02	ci left: 4.312825e-01	ci right 4.410268e-01	k: 17446	n:40000
RYR2   40000 perm   76 sec   (528 perm/sec)   p_kst 4.361500e-01   p_cons 3.000000e-03   p_joint 7.450000e-03

Joint ci ratio: 2.022094e-01	ci left: 6.705477e-03	ci right 8.232543e-03	k: 372	n:50000
Cons ci ratio: 3.250627e-01	ci left: 2.429353e-03	ci right 3.389804e-03	k: 144	n:50000
KS ci ratio: 1.993964e-02	ci left: 4.316073e-01	ci right 4.403201e-01	k: 21798	n:50000
RYR2   50000 perm   93 sec   (539 perm/sec)   p_kst 4.359600e-01   p_cons 2.880000e-03   p_joint 7.440000e-03

Joint ci ratio: 2.246269e-01	ci left: 4.482805e-03	ci right 5.632538e-03	k: 302	n:60000
Cons ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
KS ci ratio: 1.822379e-02	ci left: 4.314110e-01	ci right 4.393619e-01	k: 26123	n:60000
RYR2   60000 perm   109 sec   (548 perm/sec)   p_kst 4.353833e-01   p_cons 1.633333e-03   p_joint 5.033333e-03

Joint ci ratio: 2.269768e-01	ci left: 3.761374e-03	ci right 4.737567e-03	k: 296	n:70000
Cons ci ratio: 3.769084e-01	ci left: 1.252865e-03	ci right 1.846828e-03	k: 107	n:70000
KS ci ratio: 1.686704e-02	ci left: 4.318511e-01	ci right 4.392114e-01	k: 30487	n:70000
RYR2   70000 perm   126 sec   (555 perm/sec)   p_kst 4.355286e-01   p_cons 1.528571e-03   p_joint 4.228571e-03

Joint ci ratio: 2.338530e-01	ci left: 3.090837e-03	ci right 3.920812e-03	k: 279	n:80000
Cons ci ratio: 3.605968e-01	ci left: 1.209673e-03	ci right 1.752513e-03	k: 117	n:80000
KS ci ratio: 1.576781e-02	ci left: 4.323975e-01	ci right 4.392821e-01	k: 34867	n:80000
RYR2   80000 perm   143 sec   (561 perm/sec)   p_kst 4.358375e-01   p_cons 1.462500e-03   p_joint 3.487500e-03

Joint ci ratio: 2.310198e-01	ci left: 2.820612e-03	ci right 3.567533e-03	k: 286	n:90000
Cons ci ratio: 3.371249e-01	ci left: 1.247624e-03	ci right 1.763142e-03	k: 134	n:90000
KS ci ratio: 1.486116e-02	ci left: 4.327568e-01	ci right 4.392473e-01	k: 39240	n:90000
RYR2   90000 perm   159 sec   (566 perm/sec)   p_kst 4.360000e-01   p_cons 1.488889e-03   p_joint 3.177778e-03

Joint ci ratio: 1.829495e-01	ci left: 4.151846e-03	ci right 4.997285e-03	k: 456	n:100000
Cons ci ratio: 3.208980e-01	ci left: 1.251305e-03	ci right 1.738346e-03	k: 148	n:100000
KS ci ratio: 1.410974e-02	ci left: 4.325337e-01	ci right 4.386900e-01	k: 43561	n:100000
RYR2   100000 perm   176 sec   (569 perm/sec)   p_kst 4.356100e-01   p_cons 1.480000e-03   p_joint 4.560000e-03

Joint ci ratio: 1.667302e-01	ci left: 4.583017e-03	ci right 5.425226e-03	k: 549	n:110000
Cons ci ratio: 3.031070e-01	ci left: 1.288388e-03	ci right 1.756707e-03	k: 166	n:110000
KS ci ratio: 1.346859e-02	ci left: 4.321129e-01	ci right 4.379814e-01	k: 47855	n:110000
RYR2   110000 perm   193 sec   (571 perm/sec)   p_kst 4.350455e-01   p_cons 1.509091e-03   p_joint 4.990909e-03

Joint ci ratio: 1.623746e-01	ci left: 4.440777e-03	ci right 5.233444e-03	k: 579	n:120000
Cons ci ratio: 2.944266e-01	ci left: 1.258108e-03	ci right 1.699881e-03	k: 176	n:120000
KS ci ratio: 1.290100e-02	ci left: 4.320176e-01	ci right 4.376355e-01	k: 52179	n:120000
RYR2   120000 perm   210 sec   (572 perm/sec)   p_kst 4.348250e-01   p_cons 1.466667e-03   p_joint 4.825000e-03

Joint ci ratio: 1.516212e-01	ci left: 4.727414e-03	ci right 5.510295e-03	k: 664	n:130000
Cons ci ratio: 2.826916e-01	ci left: 1.268369e-03	ci right 1.692829e-03	k: 191	n:130000
KS ci ratio: 1.238641e-02	ci left: 4.324641e-01	ci right 4.378618e-01	k: 56571	n:130000
RYR2   130000 perm   227 sec   (573 perm/sec)   p_kst 4.351615e-01   p_cons 1.469231e-03   p_joint 5.107692e-03

Joint ci ratio: 1.508534e-01	ci left: 4.437799e-03	ci right 5.168657e-03	k: 671	n:140000
Cons ci ratio: 2.729174e-01	ci left: 1.270807e-03	ci right 1.678860e-03	k: 205	n:140000
KS ci ratio: 1.193908e-02	ci left: 4.324295e-01	ci right 4.376304e-01	k: 60904	n:140000
RYR2   140000 perm   244 sec   (574 perm/sec)   p_kst 4.350286e-01   p_cons 1.464286e-03   p_joint 4.792857e-03

Joint ci ratio: 1.472879e-01	ci left: 4.353726e-03	ci right 5.052298e-03	k: 704	n:150000
Cons ci ratio: 2.611364e-01	ci left: 1.304281e-03	ci right 1.702055e-03	k: 224	n:150000
KS ci ratio: 1.152774e-02	ci left: 4.327956e-01	ci right 4.378203e-01	k: 65296	n:150000
RYR2   150000 perm   261 sec   (574 perm/sec)   p_kst 4.353067e-01   p_cons 1.493333e-03   p_joint 4.693333e-03

Joint ci ratio: 1.344951e-01	ci left: 4.925927e-03	ci right 5.642179e-03	k: 844	n:160000
Cons ci ratio: 2.517957e-01	ci left: 1.322187e-03	ci right 1.708737e-03	k: 241	n:160000
KS ci ratio: 1.116440e-02	ci left: 4.327563e-01	ci right 4.376211e-01	k: 69630	n:160000
RYR2   160000 perm   279 sec   (574 perm/sec)   p_kst 4.351875e-01   p_cons 1.506250e-03   p_joint 5.275000e-03

Joint ci ratio: 1.312022e-01	ci left: 4.880694e-03	ci right 5.571639e-03	k: 887	n:170000
Cons ci ratio: 1.987800e-01	ci left: 2.055508e-03	ci right 2.514671e-03	k: 387	n:170000
KS ci ratio: 1.082237e-02	ci left: 4.332235e-01	ci right 4.379434e-01	k: 74049	n:170000
RYR2   170000 perm   296 sec   (574 perm/sec)   p_kst 4.355824e-01   p_cons 2.276471e-03   p_joint 5.217647e-03

Joint ci ratio: 1.310731e-01	ci left: 4.620250e-03	ci right 5.273629e-03	k: 889	n:180000
Cons ci ratio: 1.933739e-01	ci left: 2.057536e-03	ci right 2.503181e-03	k: 409	n:180000
KS ci ratio: 1.052493e-02	ci left: 4.329412e-01	ci right 4.375275e-01	k: 78342	n:180000
RYR2   180000 perm   313 sec   (574 perm/sec)   p_kst 4.352333e-01   p_cons 2.272222e-03   p_joint 4.938889e-03

Joint ci ratio: 1.303565e-01	ci left: 4.427961e-03	ci right 5.050456e-03	k: 899	n:190000
Cons ci ratio: 1.892663e-01	ci left: 2.039442e-03	ci right 2.470706e-03	k: 427	n:190000
KS ci ratio: 1.024085e-02	ci left: 4.331637e-01	ci right 4.376277e-01	k: 82725	n:190000
RYR2   190000 perm   331 sec   (574 perm/sec)   p_kst 4.353947e-01   p_cons 2.247368e-03   p_joint 4.731579e-03

Joint ci ratio: 1.291524e-01	ci left: 4.288783e-03	ci right 4.885716e-03	k: 916	n:200000
Cons ci ratio: 1.862488e-01	ci left: 2.004176e-03	ci right 2.420462e-03	k: 441	n:200000
KS ci ratio: 9.980533e-03	ci left: 4.332705e-01	ci right 4.376214e-01	k: 87089	n:200000
RYR2   200000 perm   348 sec   (574 perm/sec)   p_kst 4.354450e-01   p_cons 2.205000e-03   p_joint 4.580000e-03

Joint ci ratio: 1.283259e-01	ci left: 4.139837e-03	ci right 4.712070e-03	k: 928	n:210000
Cons ci ratio: 1.837753e-01	ci left: 1.963232e-03	ci right 2.364994e-03	k: 453	n:210000
KS ci ratio: 9.738445e-03	ci left: 4.334017e-01	ci right 4.376477e-01	k: 91460	n:210000
RYR2   210000 perm   366 sec   (574 perm/sec)   p_kst 4.355238e-01   p_cons 2.157143e-03   p_joint 4.419048e-03

Joint ci ratio: 1.262408e-01	ci left: 4.088078e-03	ci right 4.643287e-03	k: 959	n:220000
Cons ci ratio: 1.794780e-01	ci left: 1.969448e-03	ci right 2.362035e-03	k: 475	n:220000
KS ci ratio: 9.516415e-03	ci left: 4.333540e-01	ci right 4.375022e-01	k: 95794	n:220000
RYR2   220000 perm   384 sec   (572 perm/sec)   p_kst 4.354273e-01   p_cons 2.159091e-03   p_joint 4.359091e-03

Joint ci ratio: 1.241283e-01	ci left: 4.049316e-03	ci right 4.589380e-03	k: 992	n:230000
Cons ci ratio: 1.761792e-01	ci left: 1.958597e-03	ci right 2.341080e-03	k: 493	n:230000
KS ci ratio: 9.306934e-03	ci left: 4.334158e-01	ci right 4.374728e-01	k: 100152	n:230000
RYR2   230000 perm   402 sec   (572 perm/sec)   p_kst 4.354435e-01   p_cons 2.143478e-03   p_joint 4.313043e-03

Joint ci ratio: 1.202494e-01	ci left: 4.143163e-03	ci right 4.677248e-03	k: 1057	n:240000
Cons ci ratio: 1.722153e-01	ci left: 1.968645e-03	ci right 2.343541e-03	k: 516	n:240000
KS ci ratio: 9.106613e-03	ci left: 4.336941e-01	ci right 4.376658e-01	k: 104563	n:240000
RYR2   240000 perm   420 sec   (571 perm/sec)   p_kst 4.356792e-01   p_cons 2.150000e-03   p_joint 4.404167e-03

Joint ci ratio: 1.173440e-01	ci left: 4.183142e-03	ci right 4.708449e-03	k: 1110	n:250000
Cons ci ratio: 1.675769e-01	ci left: 2.000970e-03	ci right 2.370723e-03	k: 545	n:250000
KS ci ratio: 8.921231e-03	ci left: 4.338110e-01	ci right 4.377025e-01	k: 108939	n:250000
RYR2   250000 perm   438 sec   (570 perm/sec)   p_kst 4.357560e-01   p_cons 2.180000e-03   p_joint 4.440000e-03

Joint ci ratio: 1.155404e-01	ci left: 4.152942e-03	ci right 4.665894e-03	k: 1145	n:260000
Cons ci ratio: 1.640103e-01	ci left: 2.012488e-03	ci right 2.375675e-03	k: 569	n:260000
KS ci ratio: 8.750217e-03	ci left: 4.337237e-01	ci right 4.375393e-01	k: 113264	n:260000
RYR2   260000 perm   457 sec   (569 perm/sec)   p_kst 4.356308e-01   p_cons 2.188462e-03   p_joint 4.403846e-03

Joint ci ratio: 1.111996e-01	ci left: 4.326633e-03	ci right 4.839646e-03	k: 1236	n:270000
Cons ci ratio: 1.609340e-01	ci left: 2.016120e-03	ci right 2.372478e-03	k: 591	n:270000
KS ci ratio: 8.589063e-03	ci left: 4.336212e-01	ci right 4.373653e-01	k: 117583	n:270000
RYR2   270000 perm   475 sec   (569 perm/sec)   p_kst 4.354926e-01   p_cons 2.188889e-03   p_joint 4.577778e-03

Joint ci ratio: 1.115262e-01	ci left: 4.147786e-03	ci right 4.641131e-03	k: 1229	n:280000
Cons ci ratio: 1.588040e-01	ci left: 1.998971e-03	ci right 2.347176e-03	k: 607	n:280000
KS ci ratio: 8.434229e-03	ci left: 4.336588e-01	ci right 4.373354e-01	k: 121939	n:280000
RYR2   280000 perm   493 sec   (568 perm/sec)   p_kst 4.354964e-01   p_cons 2.167857e-03   p_joint 4.389286e-03

Joint ci ratio: 1.122239e-01	ci left: 3.954460e-03	ci right 4.427947e-03	k: 1214	n:290000
Cons ci ratio: 1.570088e-01	ci left: 1.976408e-03	ci right 2.316423e-03	k: 621	n:290000
KS ci ratio: 8.288523e-03	ci left: 4.336323e-01	ci right 4.372448e-01	k: 126277	n:290000
RYR2   290000 perm   512 sec   (567 perm/sec)   p_kst 4.354379e-01   p_cons 2.141379e-03   p_joint 4.186207e-03

Joint ci ratio: 1.133138e-01	ci left: 3.748117e-03	ci right 4.201547e-03	k: 1191	n:300000
Cons ci ratio: 1.547860e-01	ci left: 1.968186e-03	ci right 2.301548e-03	k: 639	n:300000
KS ci ratio: 8.149399e-03	ci left: 4.336514e-01	ci right 4.372032e-01	k: 130628	n:300000
RYR2   300000 perm   530 sec   (566 perm/sec)   p_kst 4.354267e-01   p_cons 2.130000e-03   p_joint 3.970000e-03

Joint ci ratio: 1.065752e-01	ci left: 4.113513e-03	ci right 4.579699e-03	k: 1346	n:310000
Cons ci ratio: 1.524230e-01	ci left: 1.966733e-03	ci right 2.294299e-03	k: 659	n:310000
KS ci ratio: 8.018578e-03	ci left: 4.335763e-01	ci right 4.370701e-01	k: 134950	n:310000
RYR2   310000 perm   549 sec   (565 perm/sec)   p_kst 4.353226e-01   p_cons 2.125806e-03   p_joint 4.341935e-03

Joint ci ratio: 9.750984e-02	ci left: 4.779890e-03	ci right 5.272889e-03	k: 1607	n:320000
Cons ci ratio: 1.511709e-01	ci left: 1.938339e-03	ci right 2.258285e-03	k: 670	n:320000
KS ci ratio: 7.891955e-03	ci left: 4.336249e-01	ci right 4.370637e-01	k: 139310	n:320000
RYR2   320000 perm   568 sec   (564 perm/sec)   p_kst 4.353437e-01   p_cons 2.093750e-03   p_joint 5.021875e-03

Joint ci ratio: 9.605745e-02	ci left: 4.779936e-03	ci right 5.265183e-03	k: 1656	n:330000
Cons ci ratio: 1.489674e-01	ci left: 1.937932e-03	ci right 2.252732e-03	k: 690	n:330000
KS ci ratio: 7.770141e-03	ci left: 4.337347e-01	ci right 4.371210e-01	k: 143691	n:330000
RYR2   330000 perm   587 sec   (562 perm/sec)   p_kst 4.354273e-01   p_cons 2.090909e-03   p_joint 5.018182e-03

Joint ci ratio: 9.492005e-02	ci left: 4.754184e-03	ci right 5.230784e-03	k: 1696	n:340000
Cons ci ratio: 1.469611e-01	ci left: 1.934747e-03	ci right 2.244425e-03	k: 709	n:340000
KS ci ratio: 7.658150e-03	ci left: 4.335591e-01	ci right 4.368950e-01	k: 147977	n:340000
RYR2   340000 perm   606 sec   (561 perm/sec)   p_kst 4.352265e-01   p_cons 2.085294e-03   p_joint 4.988235e-03

Joint ci ratio: 9.716739e-02	ci left: 4.403595e-03	ci right 4.856095e-03	k: 1619	n:350000
Cons ci ratio: 1.453337e-01	ci left: 1.923511e-03	ci right 2.227685e-03	k: 725	n:350000
KS ci ratio: 7.549372e-03	ci left: 4.334909e-01	ci right 4.367787e-01	k: 152297	n:350000
RYR2   350000 perm   625 sec   (560 perm/sec)   p_kst 4.351343e-01   p_cons 2.071429e-03   p_joint 4.625714e-03

Joint ci ratio: 9.490520e-02	ci left: 4.492746e-03	ci right 4.943061e-03	k: 1697	n:360000
Cons ci ratio: 1.432762e-01	ci left: 1.926307e-03	ci right 2.226243e-03	k: 746	n:360000
KS ci ratio: 7.444554e-03	ci left: 4.334630e-01	ci right 4.367047e-01	k: 156630	n:360000
RYR2   360000 perm   644 sec   (559 perm/sec)   p_kst 4.350833e-01   p_cons 2.072222e-03   p_joint 4.713889e-03

Joint ci ratio: 9.372640e-02	ci left: 4.484794e-03	ci right 4.928423e-03	k: 1740	n:370000
Cons ci ratio: 1.418601e-01	ci left: 1.913338e-03	ci right 2.208061e-03	k: 761	n:370000
KS ci ratio: 7.342732e-03	ci left: 4.335206e-01	ci right 4.367182e-01	k: 160994	n:370000
RYR2   370000 perm   663 sec   (558 perm/sec)   p_kst 4.351189e-01   p_cons 2.056757e-03   p_joint 4.702703e-03

Joint ci ratio: 8.951653e-02	ci left: 4.796215e-03	ci right 5.248225e-03	k: 1907	n:380000
Cons ci ratio: 1.407577e-01	ci left: 1.893448e-03	ci right 2.182650e-03	k: 773	n:380000
KS ci ratio: 7.340477e-03	ci left: 4.271520e-01	ci right 4.303017e-01	k: 162916	n:380000
RYR2   380000 perm   683 sec   (556 perm/sec)   p_kst 4.287263e-01   p_cons 2.034211e-03   p_joint 5.018421e-03

Joint ci ratio: 9.131924e-02	ci left: 4.487749e-03	ci right 4.919660e-03	k: 1833	n:390000
Cons ci ratio: 1.387114e-01	ci left: 1.901812e-03	ci right 2.187719e-03	k: 796	n:390000
KS ci ratio: 7.244933e-03	ci left: 4.272281e-01	ci right 4.303371e-01	k: 167225	n:390000
RYR2   390000 perm   703 sec   (555 perm/sec)   p_kst 4.287821e-01   p_cons 2.041026e-03   p_joint 4.700000e-03

Joint ci ratio: 9.005097e-02	ci left: 4.502609e-03	ci right 4.929615e-03	k: 1885	n:400000
Cons ci ratio: 1.372559e-01	ci left: 1.895299e-03	ci right 2.176993e-03	k: 813	n:400000
KS ci ratio: 7.156093e-03	ci left: 4.270907e-01	ci right 4.301604e-01	k: 171450	n:400000
RYR2   400000 perm   722 sec   (554 perm/sec)   p_kst 4.286250e-01   p_cons 2.032500e-03   p_joint 4.712500e-03

Joint ci ratio: 8.922818e-02	ci left: 4.476238e-03	ci right 4.896662e-03	k: 1920	n:410000
Cons ci ratio: 1.360916e-01	ci left: 1.882050e-03	ci right 2.159210e-03	k: 827	n:410000
KS ci ratio: 7.071358e-03	ci left: 4.268968e-01	ci right 4.299286e-01	k: 175649	n:410000
RYR2   410000 perm   742 sec   (553 perm/sec)   p_kst 4.284122e-01   p_cons 2.017073e-03   p_joint 4.682927e-03

Joint ci ratio: 8.927989e-02	ci left: 4.364995e-03	ci right 4.775220e-03	k: 1918	n:420000
Cons ci ratio: 1.345568e-01	ci left: 1.880946e-03	ci right 2.154569e-03	k: 846	n:420000
KS ci ratio: 6.987454e-03	ci left: 4.268599e-01	ci right 4.298554e-01	k: 179910	n:420000
RYR2   420000 perm   761 sec   (552 perm/sec)   p_kst 4.283571e-01   p_cons 2.014286e-03   p_joint 4.566667e-03

Joint ci ratio: 8.684105e-02	ci left: 4.511404e-03	ci right 4.923220e-03	k: 2027	n:430000
Cons ci ratio: 1.329190e-01	ci left: 1.884406e-03	ci right 2.154933e-03	k: 867	n:430000
KS ci ratio: 6.904565e-03	ci left: 4.269598e-01	ci right 4.299202e-01	k: 184229	n:430000
RYR2   430000 perm   781 sec   (550 perm/sec)   p_kst 4.284395e-01   p_cons 2.016279e-03   p_joint 4.713953e-03

Joint ci ratio: 8.671694e-02	ci left: 4.422204e-03	ci right 4.825271e-03	k: 2033	n:440000
Cons ci ratio: 1.311181e-01	ci left: 1.894323e-03	ci right 2.162302e-03	k: 891	n:440000
KS ci ratio: 6.826554e-03	ci left: 4.269122e-01	ci right 4.298387e-01	k: 188485	n:440000
RYR2   440000 perm   801 sec   (549 perm/sec)   p_kst 4.283750e-01   p_cons 2.025000e-03   p_joint 4.620455e-03

Joint ci ratio: 8.571133e-02	ci left: 4.428300e-03	ci right 4.827008e-03	k: 2081	n:450000
Cons ci ratio: 1.293177e-01	ci left: 1.905974e-03	ci right 2.171614e-03	k: 916	n:450000
KS ci ratio: 6.748953e-03	ci left: 4.270246e-01	ci right 4.299185e-01	k: 192812	n:450000
RYR2   450000 perm   821 sec   (548 perm/sec)   p_kst 4.284711e-01   p_cons 2.035556e-03   p_joint 4.624444e-03

Joint ci ratio: 7.977416e-02	ci left: 5.013366e-03	ci right 5.432033e-03	k: 2401	n:460000
Cons ci ratio: 1.276574e-01	ci left: 1.915037e-03	ci right 2.178255e-03	k: 940	n:460000
KS ci ratio: 6.672311e-03	ci left: 4.272518e-01	ci right 4.301143e-01	k: 197194	n:460000
RYR2   460000 perm   841 sec   (547 perm/sec)   p_kst 4.286826e-01   p_cons 2.043478e-03   p_joint 5.219565e-03

Joint ci ratio: 7.898919e-02	ci left: 5.006799e-03	ci right 5.420614e-03	k: 2449	n:470000
Cons ci ratio: 1.264541e-01	ci left: 1.911372e-03	ci right 2.171424e-03	k: 958	n:470000
KS ci ratio: 6.600512e-03	ci left: 4.272994e-01	ci right 4.301312e-01	k: 201496	n:470000
RYR2   470000 perm   862 sec   (545 perm/sec)   p_kst 4.287149e-01   p_cons 2.038298e-03   p_joint 5.210638e-03

Joint ci ratio: 7.791402e-02	ci left: 5.041381e-03	ci right 5.452126e-03	k: 2517	n:480000
Cons ci ratio: 1.249004e-01	ci left: 1.919980e-03	ci right 2.177756e-03	k: 982	n:480000
KS ci ratio: 6.533206e-03	ci left: 4.271786e-01	ci right 4.299806e-01	k: 205718	n:480000
RYR2   480000 perm   882 sec   (544 perm/sec)   p_kst 4.285792e-01   p_cons 2.045833e-03   p_joint 5.243750e-03

Joint ci ratio: 7.862757e-02	ci left: 4.848438e-03	ci right 5.247245e-03	k: 2472	n:490000
Cons ci ratio: 1.239589e-01	ci left: 1.910456e-03	ci right 2.164878e-03	k: 997	n:490000
KS ci ratio: 6.466757e-03	ci left: 4.271505e-01	ci right 4.299238e-01	k: 209983	n:490000
RYR2   490000 perm   903 sec   (543 perm/sec)   p_kst 4.285367e-01   p_cons 2.034694e-03   p_joint 5.044898e-03

Joint ci ratio: 7.620731e-02	ci left: 5.063335e-03	ci right 5.466431e-03	k: 2631	n:500000
Cons ci ratio: 1.220167e-01	ci left: 1.934279e-03	ci right 2.187546e-03	k: 1029	n:500000
KS ci ratio: 6.399003e-03	ci left: 4.273757e-01	ci right 4.301212e-01	k: 214374	n:500000
RYR2   500000 perm   923 sec   (542 perm/sec)   p_kst 4.287480e-01   p_cons 2.058000e-03   p_joint 5.262000e-03

Joint ci ratio: 7.552212e-02	ci left: 5.056385e-03	ci right 5.455149e-03	k: 2679	n:510000
Cons ci ratio: 1.210225e-01	ci left: 1.928672e-03	ci right 2.179000e-03	k: 1046	n:510000
KS ci ratio: 6.334119e-03	ci left: 4.275313e-01	ci right 4.302499e-01	k: 218734	n:510000
RYR2   510000 perm   944 sec   (540 perm/sec)   p_kst 4.288902e-01   p_cons 2.050980e-03   p_joint 5.252941e-03

Joint ci ratio: 7.389452e-02	ci left: 5.183731e-03	ci right 5.583349e-03	k: 2798	n:520000
Cons ci ratio: 1.197144e-01	ci left: 1.934481e-03	ci right 2.182657e-03	k: 1069	n:520000
KS ci ratio: 6.272153e-03	ci left: 4.276042e-01	ci right 4.302966e-01	k: 223054	n:520000
RYR2   520000 perm   964 sec   (539 perm/sec)   p_kst 4.289500e-01   p_cons 2.055769e-03   p_joint 5.380769e-03

Joint ci ratio: 7.347722e-02	ci left: 5.145185e-03	ci right 5.539497e-03	k: 2830	n:530000
Cons ci ratio: 1.186111e-01	ci left: 1.934593e-03	ci right 2.180335e-03	k: 1089	n:530000
KS ci ratio: 6.215345e-03	ci left: 4.274086e-01	ci right 4.300752e-01	k: 227233	n:530000
RYR2   530000 perm   985 sec   (538 perm/sec)   p_kst 4.287415e-01   p_cons 2.054717e-03   p_joint 5.339623e-03

Joint ci ratio: 7.148985e-02	ci left: 5.339031e-03	ci right 5.736672e-03	k: 2989	n:540000
Cons ci ratio: 1.174847e-01	ci left: 1.936508e-03	ci right 2.179995e-03	k: 1110	n:540000
KS ci ratio: 6.157769e-03	ci left: 4.274017e-01	ci right 4.300435e-01	k: 231510	n:540000
RYR2   540000 perm   1006 sec   (537 perm/sec)   p_kst 4.287222e-01   p_cons 2.055556e-03   p_joint 5.535185e-03

Joint ci ratio: 7.202828e-02	ci left: 5.163377e-03	ci right 5.550953e-03	k: 2945	n:550000
Cons ci ratio: 1.161331e-01	ci left: 1.947191e-03	ci right 2.189012e-03	k: 1136	n:550000
KS ci ratio: 6.103169e-03	ci left: 4.272825e-01	ci right 4.299001e-01	k: 235725	n:550000
RYR2   550000 perm   1027 sec   (536 perm/sec)   p_kst 4.285909e-01   p_cons 2.065455e-03   p_joint 5.354545e-03

Joint ci ratio: 7.205634e-02	ci left: 5.067657e-03	ci right 5.448203e-03	k: 2943	n:560000
Cons ci ratio: 1.151251e-01	ci left: 1.947101e-03	ci right 2.186669e-03	k: 1156	n:560000
KS ci ratio: 6.048738e-03	ci left: 4.272694e-01	ci right 4.298635e-01	k: 239997	n:560000
RYR2   560000 perm   1048 sec   (535 perm/sec)   p_kst 4.285661e-01   p_cons 2.064286e-03   p_joint 5.255357e-03

Joint ci ratio: 7.162082e-02	ci left: 5.040772e-03	ci right 5.416915e-03	k: 2979	n:570000
Cons ci ratio: 1.141428e-01	ci left: 1.947023e-03	ci right 2.184400e-03	k: 1176	n:570000
KS ci ratio: 5.996125e-03	ci left: 4.272253e-01	ci right 4.297964e-01	k: 244251	n:570000
RYR2   570000 perm   1068 sec   (534 perm/sec)   p_kst 4.285105e-01   p_cons 2.063158e-03   p_joint 5.226316e-03

Joint ci ratio: 7.305469e-02	ci left: 4.759147e-03	ci right 5.121687e-03	k: 2864	n:580000
Cons ci ratio: 1.133753e-01	ci left: 1.940254e-03	ci right 2.175109e-03	k: 1192	n:580000
KS ci ratio: 5.944944e-03	ci left: 4.271760e-01	ci right 4.297248e-01	k: 248501	n:580000
RYR2   580000 perm   1090 sec   (532 perm/sec)   p_kst 4.284500e-01   p_cons 2.055172e-03   p_joint 4.937931e-03

Joint ci ratio: 7.040289e-02	ci left: 5.043040e-03	ci right 5.412692e-03	k: 3083	n:590000
Cons ci ratio: 1.122515e-01	ci left: 1.946899e-03	ci right 2.180068e-03	k: 1216	n:590000
KS ci ratio: 5.892584e-03	ci left: 4.273334e-01	ci right 4.298606e-01	k: 252872	n:590000
RYR2   590000 perm   1111 sec   (531 perm/sec)   p_kst 4.285966e-01   p_cons 2.061017e-03   p_joint 5.225424e-03

Joint ci ratio: 7.283120e-02	ci left: 4.629951e-03	ci right 4.981524e-03	k: 2882	n:600000
Cons ci ratio: 1.107587e-01	ci left: 1.967918e-03	ci right 2.200265e-03	k: 1249	n:600000
KS ci ratio: 5.843750e-03	ci left: 4.273040e-01	ci right 4.298100e-01	k: 257134	n:600000
RYR2   600000 perm   1133 sec   (530 perm/sec)   p_kst 4.285567e-01   p_cons 2.081667e-03   p_joint 4.803333e-03

Joint ci ratio: 7.272013e-02	ci left: 4.568530e-03	ci right 4.914888e-03	k: 2891	n:610000
Cons ci ratio: 1.096240e-01	ci left: 1.977106e-03	ci right 2.207992e-03	k: 1275	n:610000
KS ci ratio: 5.796944e-03	ci left: 4.272052e-01	ci right 4.296905e-01	k: 261353	n:610000
RYR2   610000 perm   1154 sec   (528 perm/sec)   p_kst 4.284475e-01   p_cons 2.090164e-03   p_joint 4.739344e-03

Joint ci ratio: 7.221044e-02	ci left: 4.559774e-03	ci right 4.902943e-03	k: 2932	n:620000
Cons ci ratio: 1.086909e-01	ci left: 1.979732e-03	ci right 2.208831e-03	k: 1297	n:620000
KS ci ratio: 5.749540e-03	ci left: 4.272548e-01	ci right 4.297200e-01	k: 265662	n:620000
RYR2   620000 perm   1177 sec   (527 perm/sec)   p_kst 4.284871e-01   p_cons 2.091935e-03   p_joint 4.729032e-03

Joint ci ratio: 7.169921e-02	ci left: 4.552863e-03	ci right 4.892985e-03	k: 2974	n:630000
Cons ci ratio: 1.078222e-01	ci left: 1.980739e-03	ci right 2.208006e-03	k: 1318	n:630000
KS ci ratio: 5.704131e-03	ci left: 4.272300e-01	ci right 4.296755e-01	k: 269925	n:630000
RYR2   630000 perm   1198 sec   (526 perm/sec)   p_kst 4.284524e-01   p_cons 2.092063e-03   p_joint 4.720635e-03

Joint ci ratio: 7.109223e-02	ci left: 4.559990e-03	ci right 4.897642e-03	k: 3025	n:640000
Cons ci ratio: 1.067746e-01	ci left: 1.989325e-03	ci right 2.215220e-03	k: 1344	n:640000
KS ci ratio: 5.659691e-03	ci left: 4.272137e-01	ci right 4.296400e-01	k: 274193	n:640000
RYR2   640000 perm   1220 sec   (525 perm/sec)   p_kst 4.284266e-01   p_cons 2.100000e-03   p_joint 4.726562e-03

Joint ci ratio: 7.157164e-02	ci left: 4.429385e-03	ci right 4.759669e-03	k: 2985	n:650000
Cons ci ratio: 1.060284e-01	ci left: 1.987173e-03	ci right 2.211148e-03	k: 1363	n:650000
KS ci ratio: 5.616026e-03	ci left: 4.272196e-01	ci right 4.296272e-01	k: 278475	n:650000
RYR2   650000 perm   1242 sec   (523 perm/sec)   p_kst 4.284231e-01   p_cons 2.096923e-03   p_joint 4.592308e-03

Joint ci ratio: 6.834916e-02	ci left: 4.789548e-03	ci right 5.129971e-03	k: 3272	n:660000
Cons ci ratio: 1.051075e-01	ci left: 1.992468e-03	ci right 2.214969e-03	k: 1387	n:660000
KS ci ratio: 5.574978e-03	ci left: 4.270830e-01	ci right 4.294721e-01	k: 282663	n:660000
RYR2   660000 perm   1264 sec   (522 perm/sec)   p_kst 4.282773e-01   p_cons 2.101515e-03   p_joint 4.957576e-03

Joint ci ratio: 6.775107e-02	ci left: 4.803157e-03	ci right 5.141443e-03	k: 3330	n:670000
Cons ci ratio: 1.041363e-01	ci left: 2.000520e-03	ci right 2.221730e-03	k: 1413	n:670000
KS ci ratio: 5.532033e-03	ci left: 4.271968e-01	ci right 4.295680e-01	k: 287016	n:670000
RYR2   670000 perm   1286 sec   (521 perm/sec)   p_kst 4.283821e-01   p_cons 2.108955e-03   p_joint 4.970149e-03

Joint ci ratio: 6.719830e-02	ci left: 4.812041e-03	ci right 5.148080e-03	k: 3385	n:680000
Cons ci ratio: 1.031557e-01	ci left: 2.009778e-03	ci right 2.229792e-03	k: 1440	n:680000
KS ci ratio: 5.491648e-03	ci left: 4.271661e-01	ci right 4.295198e-01	k: 291273	n:680000
RYR2   680000 perm   1308 sec   (520 perm/sec)   p_kst 4.283426e-01   p_cons 2.117647e-03   p_joint 4.977941e-03

Joint ci ratio: 6.700217e-02	ci left: 4.770797e-03	ci right 5.102945e-03	k: 3405	n:690000
Cons ci ratio: 1.024121e-01	ci left: 2.010303e-03	ci right 2.228693e-03	k: 1461	n:690000
KS ci ratio: 5.452054e-03	ci left: 4.271436e-01	ci right 4.294802e-01	k: 295535	n:690000
RYR2   690000 perm   1330 sec   (519 perm/sec)   p_kst 4.283116e-01   p_cons 2.117391e-03   p_joint 4.934783e-03

Joint ci ratio: 6.853796e-02	ci left: 4.491966e-03	ci right 4.812155e-03	k: 3255	n:700000
Cons ci ratio: 1.034469e-01	ci left: 1.941219e-03	ci right 2.154364e-03	k: 1432	n:700000
KS ci ratio: 5.412736e-03	ci left: 4.271732e-01	ci right 4.294931e-01	k: 299833	n:700000
RYR2   700000 perm   1352 sec   (518 perm/sec)   p_kst 4.283329e-01   p_cons 2.045714e-03   p_joint 4.650000e-03

Joint ci ratio: 6.851908e-02	ci left: 4.431463e-03	ci right 4.747248e-03	k: 3257	n:710000
Cons ci ratio: 1.026618e-01	ci left: 1.944065e-03	ci right 2.155805e-03	k: 1454	n:710000
KS ci ratio: 5.373067e-03	ci left: 4.273105e-01	ci right 4.296140e-01	k: 304208	n:710000
RYR2   710000 perm   1374 sec   (517 perm/sec)   p_kst 4.284620e-01   p_cons 2.047887e-03   p_joint 4.587324e-03

Joint ci ratio: 6.753912e-02	ci left: 4.499620e-03	ci right 4.815497e-03	k: 3352	n:720000
Cons ci ratio: 1.019288e-01	ci left: 1.945485e-03	ci right 2.155776e-03	k: 1475	n:720000
KS ci ratio: 5.334619e-03	ci left: 4.274107e-01	ci right 4.296982e-01	k: 308559	n:720000
RYR2   720000 perm   1397 sec   (516 perm/sec)   p_kst 4.285542e-01   p_cons 2.048611e-03   p_joint 4.655556e-03

Joint ci ratio: 6.655151e-02	ci left: 4.572677e-03	ci right 4.888807e-03	k: 3452	n:730000
Cons ci ratio: 1.013131e-01	ci left: 1.942865e-03	ci right 2.151529e-03	k: 1493	n:730000
KS ci ratio: 5.297785e-03	ci left: 4.274342e-01	ci right 4.297060e-01	k: 312856	n:730000
RYR2   730000 perm   1419 sec   (514 perm/sec)   p_kst 4.285699e-01   p_cons 2.045205e-03   p_joint 4.728767e-03

Joint ci ratio: 6.611266e-02	ci left: 4.572015e-03	ci right 4.885936e-03	k: 3498	n:740000
Cons ci ratio: 1.008087e-01	ci left: 1.936368e-03	ci right 2.143237e-03	k: 1508	n:740000
KS ci ratio: 5.261616e-03	ci left: 4.274653e-01	ci right 4.297217e-01	k: 317159	n:740000
RYR2   740000 perm   1441 sec   (513 perm/sec)   p_kst 4.285932e-01   p_cons 2.037838e-03   p_joint 4.727027e-03

Joint ci ratio: 6.522183e-02	ci left: 4.636958e-03	ci right 4.950886e-03	k: 3594	n:750000
Cons ci ratio: 1.001472e-01	ci left: 1.936546e-03	ci right 2.141997e-03	k: 1528	n:750000
KS ci ratio: 5.226862e-03	ci left: 4.274316e-01	ci right 4.296729e-01	k: 321414	n:750000
RYR2   750000 perm   1464 sec   (512 perm/sec)   p_kst 4.285520e-01   p_cons 2.037333e-03   p_joint 4.792000e-03

Joint ci ratio: 6.396669e-02	ci left: 4.759779e-03	ci right 5.075591e-03	k: 3736	n:760000
Cons ci ratio: 9.962760e-02	ci left: 1.931592e-03	ci right 2.135392e-03	k: 1544	n:760000
KS ci ratio: 5.193875e-03	ci left: 4.272963e-01	ci right 4.295227e-01	k: 325591	n:760000
RYR2   760000 perm   1487 sec   (511 perm/sec)   p_kst 4.284092e-01   p_cons 2.031579e-03   p_joint 4.915789e-03

Outputting figure to mutsig2_images.part000000000151/RYR2.166_15324_760000_0.42841_0.0020316_0.0049158.png
                gene_name: RYR2
               theta_stop: 0.100 
                    nperm: 760000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.0020 
      ci_cons_bounds_left: 0.0019 
     ci_cons_bounds_right: 0.0021 
                  p_joint: 0.0049 
     ci_joint_bounds_left: 0.0048 
    ci_joint_bounds_right: 0.0051 

Current progress: 2 percent done.
RYR3
Processing conservation and coverage...
66% 
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
Cons ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
KS ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
RYR3   10000 perm   7 sec   (1484 perm/sec)   p_kst 4.990000e-01   p_cons 9.050000e-02   p_joint 2.348000e-01

Joint ci ratio: 4.912987e-02	ci left: 2.354822e-01	ci right 2.473931e-01	k: 4828	n:20000
Cons ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
KS ci ratio: 2.872419e-02	ci left: 4.752029e-01	ci right 4.891023e-01	k: 9643	n:20000
RYR3   20000 perm   14 sec   (1444 perm/sec)   p_kst 4.821500e-01   p_cons 9.145000e-02   p_joint 2.414000e-01

Outputting figure to mutsig2_images.part000000000151/RYR3.52_15029_20000_0.48215_0.09145_0.2414.png
                gene_name: RYR3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 5 percent done.
RYR1
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
Cons ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
RYR1   10000 perm   6 sec   (1549 perm/sec)   p_kst 3.106000e-01   p_cons 3.369000e-01   p_joint 3.653000e-01

Outputting figure to mutsig2_images.part000000000151/RYR1.52_15541_10000_0.3106_0.3369_0.3653.png
                gene_name: RYR1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
RUNX1T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
KS ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
RUNX1T1   10000 perm   2 sec   (4224 perm/sec)   p_kst 1.430000e-02   p_cons 3.613000e-01   p_joint 2.910000e-02

Joint ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
Cons ci ratio: 3.693418e-02	ci left: 3.535924e-01	ci right 3.669483e-01	k: 7205	n:20000
KS ci ratio: 2.330359e-01	ci left: 1.232340e-02	ci right 1.562013e-02	k: 278	n:20000
RUNX1T1   20000 perm   5 sec   (3855 perm/sec)   p_kst 1.390000e-02   p_cons 3.602500e-01   p_joint 2.525000e-02

Joint ci ratio: 1.519584e-01	ci left: 2.004894e-02	ci right 2.337792e-02	k: 650	n:30000
Cons ci ratio: 3.140178e-02	ci left: 3.364648e-01	ci right 3.472325e-01	k: 10255	n:30000
KS ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
RUNX1T1   30000 perm   8 sec   (3702 perm/sec)   p_kst 1.430000e-02   p_cons 3.418333e-01   p_joint 2.166667e-02

Joint ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
Cons ci ratio: 2.717460e-02	ci left: 3.375247e-01	ci right 3.468482e-01	k: 13687	n:40000
KS ci ratio: 1.640395e-01	ci left: 1.291947e-02	ci right 1.525186e-02	k: 562	n:40000
RUNX1T1   40000 perm   11 sec   (3618 perm/sec)   p_kst 1.405000e-02   p_cons 3.421750e-01   p_joint 1.495000e-02

Joint ci ratio: 1.708395e-01	ci left: 9.529293e-03	ci right 1.132823e-02	k: 520	n:50000
Cons ci ratio: 2.433597e-02	ci left: 3.374624e-01	ci right 3.457960e-01	k: 17081	n:50000
KS ci ratio: 1.475480e-01	ci left: 1.289210e-02	ci right 1.496490e-02	k: 695	n:50000
RUNX1T1   50000 perm   14 sec   (3543 perm/sec)   p_kst 1.390000e-02   p_cons 3.416200e-01   p_joint 1.040000e-02

Joint ci ratio: 1.241920e-01	ci left: 1.531806e-02	ci right 1.736244e-02	k: 979	n:60000
Cons ci ratio: 2.225301e-02	ci left: 3.370734e-01	ci right 3.446754e-01	k: 20452	n:60000
KS ci ratio: 1.323964e-01	ci left: 1.344584e-02	ci right 1.536821e-02	k: 863	n:60000
RUNX1T1   60000 perm   17 sec   (3478 perm/sec)   p_kst 1.438333e-02   p_cons 3.408667e-01   p_joint 1.631667e-02

Joint ci ratio: 1.226989e-01	ci left: 1.348894e-02	ci right 1.526594e-02	k: 1005	n:70000
Cons ci ratio: 2.054272e-02	ci left: 3.386563e-01	ci right 3.456997e-01	k: 23952	n:70000
KS ci ratio: 1.229471e-01	ci left: 1.343353e-02	ci right 1.520707e-02	k: 1001	n:70000
RUNX1T1   70000 perm   20 sec   (3419 perm/sec)   p_kst 1.430000e-02   p_cons 3.421714e-01   p_joint 1.435714e-02

Joint ci ratio: 1.173763e-01	ci left: 1.294233e-02	ci right 1.456821e-02	k: 1099	n:80000
Cons ci ratio: 1.948080e-02	ci left: 3.327641e-01	ci right 3.393228e-01	k: 26883	n:80000
KS ci ratio: 1.157338e-01	ci left: 1.331868e-02	ci right 1.496683e-02	k: 1130	n:80000
RUNX1T1   80000 perm   24 sec   (3359 perm/sec)   p_kst 1.412500e-02   p_cons 3.360375e-01   p_joint 1.373750e-02

Joint ci ratio: 9.906474e-02	ci left: 1.625220e-02	ci right 1.795690e-02	k: 1538	n:90000
Cons ci ratio: 1.834726e-02	ci left: 3.334238e-01	ci right 3.396089e-01	k: 30286	n:90000
KS ci ratio: 1.086128e-01	ci left: 1.349122e-02	ci right 1.505143e-02	k: 1283	n:90000
RUNX1T1   90000 perm   27 sec   (3307 perm/sec)   p_kst 1.425556e-02   p_cons 3.365111e-01   p_joint 1.708889e-02

Joint ci ratio: 8.469988e-02	ci left: 2.008106e-02	ci right 2.186688e-02	k: 2096	n:100000
Cons ci ratio: 1.738908e-02	ci left: 3.340102e-01	ci right 3.398792e-01	k: 33694	n:100000
KS ci ratio: 1.025180e-01	ci left: 1.367073e-02	ci right 1.515763e-02	k: 1440	n:100000
RUNX1T1   100000 perm   31 sec   (3253 perm/sec)   p_kst 1.440000e-02   p_cons 3.369400e-01   p_joint 2.096000e-02

Joint ci ratio: 8.526023e-02	ci left: 1.805004e-02	ci right 1.966638e-02	k: 2073	n:110000
Cons ci ratio: 1.659215e-02	ci left: 3.338163e-01	ci right 3.394105e-01	k: 37027	n:110000
KS ci ratio: 9.796998e-02	ci left: 1.364216e-02	ci right 1.505634e-02	k: 1577	n:110000
RUNX1T1   110000 perm   34 sec   (3204 perm/sec)   p_kst 1.433636e-02   p_cons 3.366091e-01   p_joint 1.884545e-02

Outputting figure to mutsig2_images.part000000000151/RUNX1T1.21_1870_110000_0.014336_0.33661_0.018845.png
                gene_name: RUNX1T1
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 9 percent done.
SACS
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
KS ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
SACS   10000 perm   5 sec   (2200 perm/sec)   p_kst 1.766000e-01   p_cons 1.290000e-02   p_joint 3.600000e-02

Joint ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
Cons ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
KS ci ratio: 5.892164e-02	ci left: 1.758339e-01	ci right 1.865589e-01	k: 3623	n:20000
SACS   20000 perm   10 sec   (2039 perm/sec)   p_kst 1.811500e-01   p_cons 1.385000e-02   p_joint 2.555000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 1.867970e-01	ci left: 1.311422e-02	ci right 1.584766e-02	k: 433	n:30000
KS ci ratio: 4.832683e-02	ci left: 1.755020e-01	ci right 1.842268e-01	k: 5395	n:30000
SACS   30000 perm   15 sec   (1961 perm/sec)   p_kst 1.798333e-01   p_cons 1.443333e-02   p_joint 2.113333e-02

Joint ci ratio: 1.336611e-01	ci left: 1.964140e-02	ci right 2.247873e-02	k: 841	n:40000
Cons ci ratio: 1.618662e-01	ci left: 1.327937e-02	ci right 1.564189e-02	k: 577	n:40000
KS ci ratio: 4.185472e-02	ci left: 1.760723e-01	ci right 1.836242e-01	k: 7193	n:40000
SACS   40000 perm   21 sec   (1934 perm/sec)   p_kst 1.798250e-01   p_cons 1.442500e-02   p_joint 2.102500e-02

Joint ci ratio: 1.145626e-01	ci left: 2.156773e-02	ci right 2.420806e-02	k: 1143	n:50000
Cons ci ratio: 1.454432e-01	ci left: 1.327762e-02	ci right 1.537932e-02	k: 715	n:50000
KS ci ratio: 3.745510e-02	ci left: 1.763235e-01	ci right 1.830737e-01	k: 8984	n:50000
SACS   50000 perm   26 sec   (1893 perm/sec)   p_kst 1.796800e-01   p_cons 1.430000e-02   p_joint 2.286000e-02

Joint ci ratio: 1.068658e-01	ci left: 2.075999e-02	ci right 2.311990e-02	k: 1315	n:60000
Cons ci ratio: 1.322411e-01	ci left: 1.347809e-02	ci right 1.540263e-02	k: 865	n:60000
KS ci ratio: 3.416274e-02	ci left: 1.768669e-01	ci right 1.830308e-01	k: 10796	n:60000
SACS   60000 perm   32 sec   (1861 perm/sec)   p_kst 1.799333e-01   p_cons 1.441667e-02   p_joint 2.191667e-02

Joint ci ratio: 1.046704e-01	ci left: 1.861374e-02	ci right 2.068349e-02	k: 1374	n:70000
Cons ci ratio: 1.219022e-01	ci left: 1.366905e-02	ci right 1.545724e-02	k: 1018	n:70000
KS ci ratio: 3.163393e-02	ci left: 1.770465e-01	ci right 1.827514e-01	k: 12592	n:70000
SACS   70000 perm   38 sec   (1841 perm/sec)   p_kst 1.798857e-01   p_cons 1.454286e-02   p_joint 1.962857e-02

Joint ci ratio: 9.483011e-02	ci left: 1.991989e-02	ci right 2.191507e-02	k: 1672	n:80000
Cons ci ratio: 1.147600e-01	ci left: 1.354942e-02	ci right 1.521107e-02	k: 1149	n:80000
KS ci ratio: 2.957832e-02	ci left: 1.773556e-01	ci right 1.826926e-01	k: 14401	n:80000
SACS   80000 perm   44 sec   (1818 perm/sec)   p_kst 1.800125e-01   p_cons 1.436250e-02   p_joint 2.090000e-02

Joint ci ratio: 9.180504e-02	ci left: 1.894323e-02	ci right 2.077679e-02	k: 1786	n:90000
Cons ci ratio: 1.078484e-01	ci left: 1.368588e-02	ci right 1.525675e-02	k: 1301	n:90000
KS ci ratio: 2.790063e-02	ci left: 1.773622e-01	ci right 1.823918e-01	k: 16188	n:90000
SACS   90000 perm   50 sec   (1802 perm/sec)   p_kst 1.798667e-01   p_cons 1.445556e-02   p_joint 1.984444e-02

Joint ci ratio: 8.945682e-02	ci left: 1.799653e-02	ci right 1.969155e-02	k: 1883	n:100000
Cons ci ratio: 1.019453e-01	ci left: 1.382669e-02	ci right 1.532166e-02	k: 1456	n:100000
KS ci ratio: 2.647046e-02	ci left: 1.774739e-01	ci right 1.822447e-01	k: 17985	n:100000
SACS   100000 perm   56 sec   (1786 perm/sec)   p_kst 1.798500e-01   p_cons 1.456000e-02   p_joint 1.883000e-02

Joint ci ratio: 7.769465e-02	ci left: 2.173868e-02	ci right 2.350480e-02	k: 2487	n:110000
Cons ci ratio: 9.719181e-02	ci left: 1.386396e-02	ci right 1.528907e-02	k: 1602	n:110000
KS ci ratio: 2.525308e-02	ci left: 1.774169e-01	ci right 1.819636e-01	k: 19765	n:110000
SACS   110000 perm   62 sec   (1768 perm/sec)   p_kst 1.796818e-01   p_cons 1.456364e-02   p_joint 2.260909e-02

Outputting figure to mutsig2_images.part000000000151/SACS.17_13776_110000_0.17968_0.014564_0.022609.png
                gene_name: SACS
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 11 percent done.
RTTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
Cons ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
KS ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
RTTN   10000 perm   3 sec   (3142 perm/sec)   p_kst 6.361000e-01   p_cons 1.549000e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000151/RTTN.13_6877_10000_0.6361_0.1549_0.3649.png
                gene_name: RTTN
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 14 percent done.
RXFP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
RXFP1   10000 perm   2 sec   (4750 perm/sec)   p_kst 1.770000e-02   p_cons 1.277000e-01   p_joint 3.920000e-02

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
KS ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
RXFP1   20000 perm   5 sec   (4287 perm/sec)   p_kst 1.985000e-02   p_cons 1.392000e-01   p_joint 1.955000e-02

Joint ci ratio: 1.932223e-01	ci left: 1.222473e-02	ci right 1.487072e-02	k: 405	n:30000
Cons ci ratio: 5.645260e-02	ci left: 1.345438e-01	ci right 1.423930e-01	k: 4153	n:30000
KS ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
RXFP1   30000 perm   7 sec   (4102 perm/sec)   p_kst 1.963333e-02   p_cons 1.384333e-01   p_joint 1.350000e-02

Joint ci ratio: 1.492636e-01	ci left: 1.568358e-02	ci right 1.823724e-02	k: 677	n:40000
Cons ci ratio: 4.875508e-02	ci left: 1.357225e-01	ci right 1.425299e-01	k: 5564	n:40000
KS ci ratio: 1.380816e-01	ci left: 1.838475e-02	ci right 2.113559e-02	k: 789	n:40000
RXFP1   40000 perm   10 sec   (3976 perm/sec)   p_kst 1.972500e-02   p_cons 1.391000e-01   p_joint 1.692500e-02

Joint ci ratio: 1.013676e-01	ci left: 2.756604e-02	ci right 3.052897e-02	k: 1451	n:50000
Cons ci ratio: 4.371476e-02	ci left: 1.355031e-01	ci right 1.415789e-01	k: 6926	n:50000
KS ci ratio: 1.217855e-01	ci left: 1.906239e-02	ci right 2.155374e-02	k: 1014	n:50000
RXFP1   50000 perm   13 sec   (3885 perm/sec)   p_kst 2.028000e-02   p_cons 1.385200e-01   p_joint 2.902000e-02

Joint ci ratio: 9.976958e-02	ci left: 2.383049e-02	ci right 2.634907e-02	k: 1504	n:60000
Cons ci ratio: 3.995453e-02	ci left: 1.354809e-01	ci right 1.410208e-01	k: 8294	n:60000
KS ci ratio: 1.114551e-01	ci left: 1.907302e-02	ci right 2.134039e-02	k: 1211	n:60000
RXFP1   60000 perm   16 sec   (3804 perm/sec)   p_kst 2.018333e-02   p_cons 1.382333e-01   p_joint 2.506667e-02

Joint ci ratio: 1.001571e-01	ci left: 2.034070e-02	ci right 2.249923e-02	k: 1498	n:70000
Cons ci ratio: 3.698741e-02	ci left: 1.357080e-01	ci right 1.408363e-01	k: 9678	n:70000
KS ci ratio: 1.035243e-01	ci left: 1.903136e-02	ci right 2.112297e-02	k: 1404	n:70000
RXFP1   70000 perm   19 sec   (3737 perm/sec)   p_kst 2.005714e-02   p_cons 1.382571e-01   p_joint 2.140000e-02

Joint ci ratio: 7.785872e-02	ci left: 2.951543e-02	ci right 3.191877e-02	k: 2456	n:80000
Cons ci ratio: 3.470554e-02	ci left: 1.351454e-01	ci right 1.399309e-01	k: 11002	n:80000
KS ci ratio: 9.704542e-02	ci left: 1.901665e-02	ci right 2.096838e-02	k: 1598	n:80000
RXFP1   80000 perm   22 sec   (3671 perm/sec)   p_kst 1.997500e-02   p_cons 1.375250e-01   p_joint 3.070000e-02

Outputting figure to mutsig2_images.part000000000151/RXFP1.11_2346_80000_0.019975_0.13753_0.0307.png
                gene_name: RXFP1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 16 percent done.
RXRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
Cons ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
KS ci ratio: 4.196429e-02	ci left: 4.560841e-01	ci right 4.757357e-01	k: 4659	n:10000
RXRG   10000 perm   2 sec   (5175 perm/sec)   p_kst 4.659000e-01   p_cons 9.369000e-01   p_joint 6.631000e-01

Outputting figure to mutsig2_images.part000000000151/RXRG.11_1489_10000_0.4659_0.9369_0.6631.png
                gene_name: RXRG
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 18 percent done.
RTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
RTN1   10000 perm   2 sec   (4820 perm/sec)   p_kst 9.300000e-02   p_cons 8.819000e-01   p_joint 3.107000e-01

Joint ci ratio: 5.495604e-02	ci left: 1.971965e-01	ci right 2.083900e-01	k: 4055	n:20000
Cons ci ratio: 1.042251e-02	ci left: 8.715050e-01	ci right 8.806854e-01	k: 17523	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
RTN1   20000 perm   5 sec   (4354 perm/sec)   p_kst 8.880000e-02   p_cons 8.761500e-01   p_joint 2.027500e-01

Outputting figure to mutsig2_images.part000000000151/RTN1.10_2432_20000_0.0888_0.87615_0.20275.png
                gene_name: RTN1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 20 percent done.
RUNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
Cons ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
KS ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
RUNX2   10000 perm   2 sec   (5033 perm/sec)   p_kst 1.095000e-01   p_cons 9.790000e-02   p_joint 5.730000e-02

Joint ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
Cons ci ratio: 8.064581e-02	ci left: 1.013733e-01	ci right 1.099417e-01	k: 2112	n:20000
KS ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
RUNX2   20000 perm   4 sec   (4520 perm/sec)   p_kst 1.101500e-01   p_cons 1.056000e-01   p_joint 4.720000e-02

Joint ci ratio: 1.012709e-01	ci left: 4.515283e-02	ci right 5.000194e-02	k: 1426	n:30000
Cons ci ratio: 6.639330e-02	ci left: 1.006332e-01	ci right 1.075770e-01	k: 3122	n:30000
KS ci ratio: 6.422225e-02	ci left: 1.069078e-01	ci right 1.140345e-01	k: 3313	n:30000
RUNX2   30000 perm   7 sec   (4353 perm/sec)   p_kst 1.104333e-01   p_cons 1.040667e-01   p_joint 4.753333e-02

Joint ci ratio: 7.643278e-02	ci left: 5.933690e-02	ci right 6.407698e-02	k: 2467	n:40000
Cons ci ratio: 5.837070e-02	ci left: 9.835966e-02	ci right 1.042984e-01	k: 4052	n:40000
KS ci ratio: 5.614580e-02	ci left: 1.055669e-01	ci right 1.116900e-01	k: 4344	n:40000
RUNX2   40000 perm   9 sec   (4231 perm/sec)   p_kst 1.086000e-01   p_cons 1.013000e-01   p_joint 6.167500e-02

Outputting figure to mutsig2_images.part000000000151/RUNX2.10_1614_40000_0.1086_0.1013_0.061675.png
                gene_name: RUNX2
               theta_stop: 0.076 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 23 percent done.
RUSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
RUSC1   10000 perm   2 sec   (4760 perm/sec)   p_kst 3.540000e-01   p_cons 2.823000e-01   p_joint 2.989000e-01

Outputting figure to mutsig2_images.part000000000151/RUSC1.8_2876_10000_0.354_0.2823_0.2989.png
                gene_name: RUSC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
RUFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
RUFY2   10000 perm   2 sec   (4681 perm/sec)   p_kst 4.300000e-03   p_cons 6.370000e-02   p_joint 1.130000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 1.083722e-01	ci left: 5.806318e-02	ci right 6.476503e-02	k: 1227	n:20000
KS ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
RUFY2   20000 perm   5 sec   (4285 perm/sec)   p_kst 3.900000e-03   p_cons 6.135000e-02   p_joint 4.700000e-03

Joint ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
Cons ci ratio: 8.884641e-02	ci left: 5.821980e-02	ci right 6.366561e-02	k: 1827	n:30000
KS ci ratio: 3.541719e-01	ci left: 3.347848e-03	ci right 4.817423e-03	k: 121	n:30000
RUFY2   30000 perm   7 sec   (4104 perm/sec)   p_kst 4.033333e-03   p_cons 6.090000e-02   p_joint 2.833333e-03

Joint ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
Cons ci ratio: 7.641628e-02	ci left: 5.936145e-02	ci right 6.410242e-02	k: 2468	n:40000
KS ci ratio: 3.122316e-01	ci left: 3.312947e-03	ci right 4.560770e-03	k: 156	n:40000
RUFY2   40000 perm   10 sec   (3980 perm/sec)   p_kst 3.900000e-03   p_cons 6.170000e-02   p_joint 2.550000e-03

Joint ci ratio: 1.944787e-01	ci left: 7.275890e-03	ci right 8.862022e-03	k: 402	n:50000
Cons ci ratio: 6.814035e-02	ci left: 5.996073e-02	ci right 6.421028e-02	k: 3103	n:50000
KS ci ratio: 2.759364e-01	ci left: 3.465711e-03	ci right 4.593073e-03	k: 200	n:50000
RUFY2   50000 perm   13 sec   (3891 perm/sec)   p_kst 4.000000e-03   p_cons 6.206000e-02   p_joint 8.040000e-03

Joint ci ratio: 1.442993e-01	ci left: 1.127264e-02	ci right 1.304168e-02	k: 728	n:60000
Cons ci ratio: 6.198901e-02	ci left: 6.054315e-02	ci right 6.443263e-02	k: 3748	n:60000
KS ci ratio: 2.504394e-01	ci left: 3.557600e-03	ci right 4.591278e-03	k: 243	n:60000
RUFY2   60000 perm   16 sec   (3814 perm/sec)   p_kst 4.050000e-03   p_cons 6.246667e-02   p_joint 1.213333e-02

Joint ci ratio: 2.078167e-01	ci left: 4.531583e-03	ci right 5.595794e-03	k: 353	n:70000
Cons ci ratio: 5.600907e-02	ci left: 6.356533e-02	ci right 6.724223e-02	k: 4577	n:70000
KS ci ratio: 2.325467e-01	ci left: 3.572844e-03	ci right 4.526133e-03	k: 282	n:70000
RUFY2   70000 perm   19 sec   (3742 perm/sec)   p_kst 4.028571e-03   p_cons 6.538571e-02   p_joint 5.042857e-03

Joint ci ratio: 2.058485e-01	ci left: 4.047996e-03	ci right 4.988493e-03	k: 360	n:80000
Cons ci ratio: 5.223700e-02	ci left: 6.404208e-02	ci right 6.748950e-02	k: 5260	n:80000
KS ci ratio: 2.160003e-01	ci left: 3.657193e-03	ci right 4.554357e-03	k: 327	n:80000
RUFY2   80000 perm   22 sec   (3675 perm/sec)   p_kst 4.087500e-03   p_cons 6.575000e-02   p_joint 4.500000e-03

Joint ci ratio: 2.112552e-01	ci left: 3.408541e-03	ci right 4.223954e-03	k: 342	n:90000
Cons ci ratio: 4.931033e-02	ci left: 6.399096e-02	ci right 6.723711e-02	k: 5904	n:90000
KS ci ratio: 2.039248e-01	ci left: 3.671932e-03	ci right 4.516081e-03	k: 367	n:90000
RUFY2   90000 perm   25 sec   (3609 perm/sec)   p_kst 4.077778e-03   p_cons 6.560000e-02   p_joint 3.800000e-03

Joint ci ratio: 2.028631e-01	ci left: 3.342642e-03	ci right 4.106588e-03	k: 371	n:100000
Cons ci ratio: 4.673461e-02	ci left: 6.419181e-02	ci right 6.727344e-02	k: 6572	n:100000
KS ci ratio: 1.931968e-01	ci left: 3.703875e-03	ci right 4.505309e-03	k: 409	n:100000
RUFY2   100000 perm   28 sec   (3550 perm/sec)   p_kst 4.090000e-03   p_cons 6.572000e-02   p_joint 3.710000e-03

Joint ci ratio: 1.963829e-01	ci left: 3.254665e-03	ci right 3.971899e-03	k: 396	n:110000
Cons ci ratio: 4.447845e-02	ci left: 6.448570e-02	ci right 6.742814e-02	k: 7254	n:110000
KS ci ratio: 1.837972e-01	ci left: 3.739636e-03	ci right 4.505054e-03	k: 452	n:110000
RUFY2   110000 perm   32 sec   (3491 perm/sec)   p_kst 4.109091e-03   p_cons 6.594545e-02   p_joint 3.600000e-03

Joint ci ratio: 1.939766e-01	ci left: 3.062674e-03	ci right 3.728349e-03	k: 406	n:120000
Cons ci ratio: 4.251748e-02	ci left: 6.474183e-02	ci right 6.756251e-02	k: 7937	n:120000
KS ci ratio: 1.751173e-01	ci left: 3.794131e-03	ci right 4.530149e-03	k: 498	n:120000
RUFY2   120000 perm   35 sec   (3437 perm/sec)   p_kst 4.150000e-03   p_cons 6.614167e-02   p_joint 3.383333e-03

Joint ci ratio: 1.511649e-01	ci left: 4.757023e-03	ci right 5.542222e-03	k: 668	n:130000
Cons ci ratio: 4.083550e-02	ci left: 6.483905e-02	ci right 6.754957e-02	k: 8604	n:130000
KS ci ratio: 1.694450e-01	ci left: 3.752530e-03	ci right 4.454490e-03	k: 532	n:130000
RUFY2   130000 perm   38 sec   (3384 perm/sec)   p_kst 4.092308e-03   p_cons 6.618462e-02   p_joint 5.138462e-03

Joint ci ratio: 1.541134e-01	ci left: 4.245397e-03	ci right 4.961073e-03	k: 643	n:140000
Cons ci ratio: 3.932265e-02	ci left: 6.497381e-02	ci right 6.758705e-02	k: 9278	n:140000
KS ci ratio: 1.651700e-01	ci left: 3.676106e-03	ci right 4.344694e-03	k: 560	n:140000
RUFY2   140000 perm   42 sec   (3333 perm/sec)   p_kst 4.000000e-03   p_cons 6.627143e-02   p_joint 4.592857e-03

Joint ci ratio: 1.516732e-01	ci left: 4.096990e-03	ci right 4.775718e-03	k: 664	n:150000
Cons ci ratio: 3.793780e-02	ci left: 6.518471e-02	ci right 6.771208e-02	k: 9966	n:150000
KS ci ratio: 1.593130e-01	ci left: 3.699669e-03	ci right 4.346401e-03	k: 602	n:150000
RUFY2   150000 perm   46 sec   (3282 perm/sec)   p_kst 4.013333e-03   p_cons 6.644000e-02   p_joint 4.426667e-03

Joint ci ratio: 1.489093e-01	ci left: 3.991286e-03	ci right 4.639378e-03	k: 689	n:160000
Cons ci ratio: 3.677662e-02	ci left: 6.507942e-02	ci right 6.752383e-02	k: 10607	n:160000
KS ci ratio: 1.556205e-01	ci left: 3.642540e-03	ci right 4.263148e-03	k: 631	n:160000
RUFY2   160000 perm   49 sec   (3236 perm/sec)   p_kst 3.943750e-03   p_cons 6.629375e-02   p_joint 4.306250e-03

Joint ci ratio: 1.288880e-01	ci left: 5.062836e-03	ci right 5.765958e-03	k: 919	n:170000
Cons ci ratio: 3.568874e-02	ci left: 6.508090e-02	ci right 6.745156e-02	k: 11264	n:170000
KS ci ratio: 1.510305e-01	ci left: 3.648884e-03	ci right 4.250580e-03	k: 670	n:170000
RUFY2   170000 perm   53 sec   (3189 perm/sec)   p_kst 3.941176e-03   p_cons 6.625882e-02   p_joint 5.405882e-03

Joint ci ratio: 1.254587e-01	ci left: 5.055886e-03	ci right 5.737971e-03	k: 970	n:180000
Cons ci ratio: 3.466090e-02	ci left: 6.519339e-02	ci right 6.749838e-02	k: 11941	n:180000
KS ci ratio: 1.460006e-01	ci left: 3.697585e-03	ci right 4.285234e-03	k: 717	n:180000
RUFY2   180000 perm   57 sec   (3144 perm/sec)   p_kst 3.983333e-03   p_cons 6.633889e-02   p_joint 5.388889e-03

Joint ci ratio: 1.302112e-01	ci left: 4.438145e-03	ci right 5.061324e-03	k: 901	n:190000
Cons ci ratio: 3.381473e-02	ci left: 6.493982e-02	ci right 6.717870e-02	k: 12550	n:190000
KS ci ratio: 1.430466e-01	ci left: 3.655155e-03	ci right 4.223303e-03	k: 747	n:190000
RUFY2   190000 perm   61 sec   (3099 perm/sec)   p_kst 3.931579e-03   p_cons 6.605263e-02   p_joint 4.742105e-03

Joint ci ratio: 1.290817e-01	ci left: 4.293622e-03	ci right 4.890876e-03	k: 917	n:200000
Cons ci ratio: 3.303298e-02	ci left: 6.469240e-02	ci right 6.687021e-02	k: 13155	n:200000
KS ci ratio: 1.406282e-01	ci left: 3.597776e-03	ci right 4.146758e-03	k: 773	n:200000
RUFY2   200000 perm   65 sec   (3055 perm/sec)   p_kst 3.865000e-03   p_cons 6.577500e-02   p_joint 4.585000e-03

Joint ci ratio: 1.267593e-01	ci left: 4.245881e-03	ci right 4.825069e-03	k: 951	n:210000
Cons ci ratio: 3.217560e-02	ci left: 6.495117e-02	ci right 6.707988e-02	k: 13862	n:210000
KS ci ratio: 1.379825e-01	ci left: 3.564327e-03	ci right 4.097132e-03	k: 803	n:210000
RUFY2   210000 perm   70 sec   (3009 perm/sec)   p_kst 3.823810e-03   p_cons 6.600952e-02   p_joint 4.528571e-03

Joint ci ratio: 1.303988e-01	ci left: 3.824070e-03	ci right 4.361853e-03	k: 899	n:220000
Cons ci ratio: 3.139090e-02	ci left: 6.515097e-02	ci right 6.723321e-02	k: 14561	n:220000
KS ci ratio: 1.352367e-01	ci left: 3.547184e-03	ci right 4.066025e-03	k: 836	n:220000
RUFY2   220000 perm   74 sec   (2969 perm/sec)   p_kst 3.800000e-03   p_cons 6.618636e-02   p_joint 4.086364e-03

Joint ci ratio: 1.179092e-01	ci left: 4.500518e-03	ci right 5.068594e-03	k: 1099	n:230000
Cons ci ratio: 3.069649e-02	ci left: 6.519151e-02	ci right 6.722814e-02	k: 15227	n:230000
KS ci ratio: 1.326486e-01	ci left: 3.531627e-03	ci right 4.037527e-03	k: 869	n:230000
RUFY2   230000 perm   78 sec   (2931 perm/sec)   p_kst 3.778261e-03   p_cons 6.620435e-02   p_joint 4.778261e-03

Joint ci ratio: 1.147667e-01	ci left: 4.559775e-03	ci right 5.118953e-03	k: 1160	n:240000
Cons ci ratio: 3.005432e-02	ci left: 6.519603e-02	ci right 6.718946e-02	k: 15885	n:240000
KS ci ratio: 1.294147e-01	ci left: 3.561803e-03	ci right 4.058632e-03	k: 913	n:240000
RUFY2   240000 perm   83 sec   (2891 perm/sec)   p_kst 3.804167e-03   p_cons 6.618750e-02   p_joint 4.833333e-03

Joint ci ratio: 1.146292e-01	ci left: 4.389018e-03	ci right 4.926565e-03	k: 1163	n:250000
Cons ci ratio: 2.952640e-02	ci left: 6.488678e-02	ci right 6.683530e-02	k: 16464	n:250000
KS ci ratio: 1.270066e-01	ci left: 3.554840e-03	ci right 4.040775e-03	k: 948	n:250000
RUFY2   250000 perm   88 sec   (2853 perm/sec)   p_kst 3.792000e-03   p_cons 6.585600e-02   p_joint 4.652000e-03

Joint ci ratio: 1.127104e-01	ci left: 4.369679e-03	ci right 4.895304e-03	k: 1203	n:260000
Cons ci ratio: 2.893818e-02	ci left: 6.496834e-02	ci right 6.687981e-02	k: 17139	n:260000
KS ci ratio: 1.244112e-01	ci left: 3.567125e-03	ci right 4.044041e-03	k: 988	n:260000
RUFY2   260000 perm   92 sec   (2818 perm/sec)   p_kst 3.800000e-03   p_cons 6.591923e-02   p_joint 4.626923e-03

Joint ci ratio: 1.106617e-01	ci left: 4.369850e-03	ci right 4.885317e-03	k: 1248	n:270000
Cons ci ratio: 2.840512e-02	ci left: 6.495225e-02	ci right 6.682746e-02	k: 17789	n:270000
KS ci ratio: 1.220879e-01	ci left: 3.571412e-03	ci right 4.039339e-03	k: 1026	n:270000
RUFY2   270000 perm   97 sec   (2784 perm/sec)   p_kst 3.800000e-03   p_cons 6.588519e-02   p_joint 4.622222e-03

Joint ci ratio: 1.097045e-01	ci left: 4.290180e-03	ci right 4.791589e-03	k: 1270	n:280000
Cons ci ratio: 2.788186e-02	ci left: 6.501921e-02	ci right 6.686122e-02	k: 18462	n:280000
KS ci ratio: 1.200599e-01	ci left: 3.565075e-03	ci right 4.023862e-03	k: 1061	n:280000
RUFY2   280000 perm   102 sec   (2749 perm/sec)   p_kst 3.789286e-03   p_cons 6.593571e-02   p_joint 4.535714e-03

Joint ci ratio: 1.131631e-01	ci left: 3.887431e-03	ci right 4.357047e-03	k: 1194	n:290000
Cons ci ratio: 2.740030e-02	ci left: 6.502017e-02	ci right 6.682989e-02	k: 19117	n:290000
KS ci ratio: 1.180217e-01	ci left: 3.565928e-03	ci right 4.016491e-03	k: 1098	n:290000
RUFY2   290000 perm   107 sec   (2711 perm/sec)   p_kst 3.786207e-03   p_cons 6.592069e-02   p_joint 4.117241e-03

Joint ci ratio: 1.114062e-01	ci left: 3.880958e-03	ci right 4.342036e-03	k: 1232	n:300000
Cons ci ratio: 2.692536e-02	ci left: 6.510083e-02	ci right 6.688090e-02	k: 19796	n:300000
KS ci ratio: 1.165483e-01	ci left: 3.537656e-03	ci right 3.978682e-03	k: 1126	n:300000
RUFY2   300000 perm   112 sec   (2678 perm/sec)   p_kst 3.753333e-03   p_cons 6.598667e-02   p_joint 4.106667e-03

Joint ci ratio: 1.147802e-01	ci left: 3.533174e-03	ci right 3.966507e-03	k: 1161	n:310000
Cons ci ratio: 2.648676e-02	ci left: 6.511883e-02	ci right 6.686994e-02	k: 20457	n:310000
KS ci ratio: 1.150288e-01	ci left: 3.517507e-03	ci right 3.949916e-03	k: 1156	n:310000
RUFY2   310000 perm   117 sec   (2645 perm/sec)   p_kst 3.729032e-03   p_cons 6.599032e-02   p_joint 3.745161e-03

Joint ci ratio: 1.133757e-01	ci left: 3.510799e-03	ci right 3.935766e-03	k: 1190	n:320000
Cons ci ratio: 2.609671e-02	ci left: 6.500547e-02	ci right 6.672741e-02	k: 21076	n:320000
KS ci ratio: 1.136153e-01	ci left: 3.495616e-03	ci right 3.919699e-03	k: 1185	n:320000
RUFY2   320000 perm   123 sec   (2609 perm/sec)   p_kst 3.703125e-03   p_cons 6.586250e-02   p_joint 3.718750e-03

Joint ci ratio: 1.128602e-01	ci left: 3.436794e-03	ci right 3.850785e-03	k: 1201	n:330000
Cons ci ratio: 2.571895e-02	ci left: 6.492024e-02	ci right 6.661466e-02	k: 21702	n:330000
KS ci ratio: 1.118835e-01	ci left: 3.498648e-03	ci right 3.916202e-03	k: 1222	n:330000
RUFY2   330000 perm   128 sec   (2577 perm/sec)   p_kst 3.703030e-03   p_cons 6.576364e-02   p_joint 3.639394e-03

Joint ci ratio: 1.135317e-01	ci left: 3.295688e-03	ci right 3.695201e-03	k: 1187	n:340000
Cons ci ratio: 2.536200e-02	ci left: 6.481682e-02	ci right 6.648471e-02	k: 22320	n:340000
KS ci ratio: 1.107146e-01	ci left: 3.470086e-03	ci right 3.879622e-03	k: 1248	n:340000
RUFY2   340000 perm   133 sec   (2549 perm/sec)   p_kst 3.670588e-03   p_cons 6.564706e-02   p_joint 3.491176e-03

Joint ci ratio: 1.143613e-01	ci left: 3.154325e-03	ci right 3.539684e-03	k: 1170	n:350000
Cons ci ratio: 2.499677e-02	ci left: 6.483024e-02	ci right 6.647411e-02	k: 22977	n:350000
KS ci ratio: 1.088980e-01	ci left: 3.487646e-03	ci right 3.892068e-03	k: 1290	n:350000
RUFY2   350000 perm   139 sec   (2520 perm/sec)   p_kst 3.685714e-03   p_cons 6.564857e-02   p_joint 3.342857e-03

Joint ci ratio: 1.126894e-01	ci left: 3.161167e-03	ci right 3.541341e-03	k: 1205	n:360000
Cons ci ratio: 2.466307e-02	ci left: 6.476298e-02	ci right 6.638291e-02	k: 23605	n:360000
KS ci ratio: 1.074108e-01	ci left: 3.488062e-03	ci right 3.886659e-03	k: 1326	n:360000
RUFY2   360000 perm   144 sec   (2493 perm/sec)   p_kst 3.683333e-03   p_cons 6.556944e-02   p_joint 3.347222e-03

Joint ci ratio: 1.146175e-01	ci left: 2.970678e-03	ci right 3.334469e-03	k: 1165	n:370000
Cons ci ratio: 2.432790e-02	ci left: 6.477206e-02	ci right 6.636989e-02	k: 24260	n:370000
KS ci ratio: 1.061394e-01	ci left: 3.477966e-03	ci right 3.870411e-03	k: 1358	n:370000
RUFY2   370000 perm   150 sec   (2459 perm/sec)   p_kst 3.670270e-03   p_cons 6.556757e-02   p_joint 3.148649e-03

Joint ci ratio: 1.129817e-01	ci left: 2.979430e-03	ci right 3.338738e-03	k: 1199	n:380000
Cons ci ratio: 2.401272e-02	ci left: 6.474678e-02	ci right 6.632301e-02	k: 24902	n:380000
KS ci ratio: 1.043862e-01	ci left: 3.504309e-03	ci right 3.892794e-03	k: 1404	n:380000
RUFY2   380000 perm   156 sec   (2432 perm/sec)   p_kst 3.694737e-03   p_cons 6.553158e-02   p_joint 3.155263e-03

Joint ci ratio: 1.114140e-01	ci left: 2.987768e-03	ci right 3.342754e-03	k: 1233	n:390000
Cons ci ratio: 2.371645e-02	ci left: 6.468723e-02	ci right 6.624231e-02	k: 25530	n:390000
KS ci ratio: 1.026460e-01	ci left: 3.534348e-03	ci right 3.919237e-03	k: 1452	n:390000
RUFY2   390000 perm   162 sec   (2405 perm/sec)   p_kst 3.723077e-03   p_cons 6.546154e-02   p_joint 3.161538e-03

Joint ci ratio: 1.108343e-01	ci left: 2.944667e-03	ci right 3.292592e-03	k: 1246	n:400000
Cons ci ratio: 2.341460e-02	ci left: 6.471530e-02	ci right 6.625100e-02	k: 26192	n:400000
KS ci ratio: 1.012613e-01	ci left: 3.543440e-03	ci right 3.923805e-03	k: 1492	n:400000
RUFY2   400000 perm   169 sec   (2362 perm/sec)   p_kst 3.730000e-03   p_cons 6.548000e-02   p_joint 3.115000e-03

Joint ci ratio: 1.098706e-01	ci left: 2.925022e-03	ci right 3.267426e-03	k: 1268	n:410000
Cons ci ratio: 2.313920e-02	ci left: 6.466208e-02	ci right 6.617822e-02	k: 26821	n:410000
KS ci ratio: 9.986581e-02	ci left: 3.556878e-03	ci right 3.933115e-03	k: 1534	n:410000
RUFY2   410000 perm   176 sec   (2333 perm/sec)   p_kst 3.741463e-03   p_cons 6.541707e-02   p_joint 3.092683e-03

Joint ci ratio: 1.088471e-01	ci left: 2.910957e-03	ci right 3.248337e-03	k: 1292	n:420000
Cons ci ratio: 2.284749e-02	ci left: 6.474884e-02	ci right 6.624763e-02	k: 27508	n:420000
KS ci ratio: 9.877826e-02	ci left: 3.551132e-03	ci right 3.922433e-03	k: 1568	n:420000
RUFY2   420000 perm   182 sec   (2310 perm/sec)   p_kst 3.733333e-03   p_cons 6.549524e-02   p_joint 3.076190e-03

Joint ci ratio: 1.081402e-01	ci left: 2.881720e-03	ci right 3.213405e-03	k: 1309	n:430000
Cons ci ratio: 2.258411e-02	ci left: 6.473684e-02	ci right 6.621786e-02	k: 28154	n:430000
KS ci ratio: 9.754241e-02	ci left: 3.559287e-03	ci right 3.926519e-03	k: 1608	n:430000
RUFY2   430000 perm   188 sec   (2287 perm/sec)   p_kst 3.739535e-03   p_cons 6.547442e-02   p_joint 3.044186e-03

Joint ci ratio: 1.070834e-01	ci left: 2.873726e-03	ci right 3.201054e-03	k: 1335	n:440000
Cons ci ratio: 2.232839e-02	ci left: 6.473227e-02	ci right 6.619619e-02	k: 28803	n:440000
KS ci ratio: 9.667601e-02	ci left: 3.542701e-03	ci right 3.904791e-03	k: 1637	n:440000
RUFY2   440000 perm   194 sec   (2264 perm/sec)   p_kst 3.720455e-03   p_cons 6.546136e-02   p_joint 3.034091e-03

Joint ci ratio: 1.081062e-01	ci left: 2.755796e-03	ci right 3.072880e-03	k: 1310	n:450000
Cons ci ratio: 2.207595e-02	ci left: 6.475672e-02	ci right 6.620443e-02	k: 29465	n:450000
KS ci ratio: 9.557368e-02	ci left: 3.546389e-03	ci right 3.904492e-03	k: 1675	n:450000
RUFY2   450000 perm   201 sec   (2242 perm/sec)   p_kst 3.722222e-03   p_cons 6.547778e-02   p_joint 2.911111e-03

Joint ci ratio: 1.068501e-01	ci left: 2.761467e-03	ci right 3.075280e-03	k: 1341	n:460000
Cons ci ratio: 2.183964e-02	ci left: 6.473695e-02	ci right 6.616853e-02	k: 30107	n:460000
KS ci ratio: 9.453590e-02	ci left: 3.547817e-03	ci right 3.901958e-03	k: 1712	n:460000
RUFY2   460000 perm   207 sec   (2220 perm/sec)   p_kst 3.721739e-03   p_cons 6.545000e-02   p_joint 2.915217e-03

Joint ci ratio: 9.982456e-02	ci left: 3.106922e-03	ci right 3.435419e-03	k: 1536	n:470000
Cons ci ratio: 2.161039e-02	ci left: 6.472021e-02	ci right 6.613621e-02	k: 30750	n:470000
KS ci ratio: 9.321098e-02	ci left: 3.574141e-03	ci right 3.925637e-03	k: 1761	n:470000
RUFY2   470000 perm   214 sec   (2196 perm/sec)   p_kst 3.746809e-03   p_cons 6.542553e-02   p_joint 3.268085e-03

Outputting figure to mutsig2_images.part000000000151/RUFY2.7_2119_470000_0.0037468_0.065426_0.0032681.png
                gene_name: RUFY2
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.0037 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0039 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 27 percent done.
RXFP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.816171e-02	ci left: 8.156806e-01	ci right 8.307306e-01	k: 8233	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
RXFP3   10000 perm   2 sec   (5997 perm/sec)   p_kst 9.525000e-01   p_cons 8.233000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RXFP3.7_1414_10000_0.9525_0.8233_1.png
                gene_name: RXFP3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
S1PR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
Cons ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
KS ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
S1PR1   10000 perm   2 sec   (5534 perm/sec)   p_kst 3.307000e-01   p_cons 5.080000e-01   p_joint 4.914000e-01

Outputting figure to mutsig2_images.part000000000151/S1PR1.7_1153_10000_0.3307_0.508_0.4914.png
                gene_name: S1PR1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 32 percent done.
RTP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
RTP2   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.657000e-01   p_cons 5.325000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000151/RTP2.6_686_10000_0.5657_0.5325_0.6531.png
                gene_name: RTP2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 34 percent done.
RTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
Cons ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
KS ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
RTN3   10000 perm   2 sec   (4926 perm/sec)   p_kst 3.188000e-01   p_cons 6.233000e-01   p_joint 5.575000e-01

Outputting figure to mutsig2_images.part000000000151/RTN3.5_3209_10000_0.3188_0.6233_0.5575.png
                gene_name: RTN3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 36 percent done.
RUFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
Cons ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
KS ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
RUFY1   10000 perm   2 sec   (5633 perm/sec)   p_kst 5.050000e-02   p_cons 1.508000e-01   p_joint 7.190000e-02

Joint ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
Cons ci ratio: 6.904321e-02	ci left: 1.339869e-01	ci right 1.436184e-01	k: 2775	n:20000
KS ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
RUFY1   20000 perm   4 sec   (5061 perm/sec)   p_kst 5.075000e-02   p_cons 1.387500e-01   p_joint 5.725000e-02

Joint ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
Cons ci ratio: 5.390991e-02	ci left: 1.457790e-01	ci right 1.538889e-01	k: 4494	n:30000
KS ci ratio: 9.725848e-02	ci left: 4.886307e-02	ci right 5.389093e-02	k: 1540	n:30000
RUFY1   30000 perm   6 sec   (4816 perm/sec)   p_kst 5.133333e-02   p_cons 1.498000e-01   p_joint 5.846667e-02

Outputting figure to mutsig2_images.part000000000151/RUFY1.5_2199_30000_0.051333_0.1498_0.058467.png
                gene_name: RUFY1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 39 percent done.
RUFY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
Cons ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
RUFY3   10000 perm   2 sec   (5039 perm/sec)   p_kst 5.691000e-01   p_cons 7.080000e-01   p_joint 6.617000e-01

Outputting figure to mutsig2_images.part000000000151/RUFY3.5_2378_10000_0.5691_0.708_0.6617.png
                gene_name: RUFY3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 41 percent done.
S1PR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
Cons ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
KS ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
S1PR3   10000 perm   2 sec   (5981 perm/sec)   p_kst 8.118000e-01   p_cons 2.363000e-01   p_joint 5.135000e-01

Outputting figure to mutsig2_images.part000000000151/S1PR3.5_1141_10000_0.8118_0.2363_0.5135.png
                gene_name: S1PR3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
SAAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177704e-02	ci left: 5.937330e-01	ci right 6.130067e-01	k: 6034	n:10000
Cons ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
KS ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
SAAL1   10000 perm   2 sec   (5447 perm/sec)   p_kst 6.564000e-01   p_cons 3.127000e-01   p_joint 6.034000e-01

Outputting figure to mutsig2_images.part000000000151/SAAL1.5_1473_10000_0.6564_0.3127_0.6034.png
                gene_name: SAAL1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 45 percent done.
RTKN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
RTKN   10000 perm   2 sec   (5899 perm/sec)   p_kst 8.459000e-01   p_cons 4.187000e-01   p_joint 7.345000e-01

Outputting figure to mutsig2_images.part000000000151/RTKN.4_1816_10000_0.8459_0.4187_0.7345.png
                gene_name: RTKN
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 48 percent done.
RTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
Cons ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
KS ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
RTN4   10000 perm   2 sec   (4778 perm/sec)   p_kst 1.138000e-01   p_cons 1.875000e-01   p_joint 8.450000e-02

Joint ci ratio: 8.308492e-02	ci left: 9.597378e-02	ci right 1.043429e-01	k: 2002	n:20000
Cons ci ratio: 5.861568e-02	ci left: 1.773660e-01	ci right 1.881264e-01	k: 3654	n:20000
KS ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
RTN4   20000 perm   5 sec   (4267 perm/sec)   p_kst 1.146000e-01   p_cons 1.827000e-01   p_joint 1.001000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4.4_3653_20000_0.1146_0.1827_0.1001.png
                gene_name: RTN4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 50 percent done.
RTN4IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
RTN4IP1   10000 perm   2 sec   (5723 perm/sec)   p_kst 4.592000e-01   p_cons 6.786000e-01   p_joint 8.060000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4IP1.4_1227_10000_0.4592_0.6786_0.806.png
                gene_name: RTN4IP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 52 percent done.
RXFP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
KS ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
RXFP2   10000 perm   2 sec   (5138 perm/sec)   p_kst 9.676000e-01   p_cons 6.713000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RXFP2.4_2337_10000_0.9676_0.6713_1.png
                gene_name: RXFP2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
RSRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
RSRC2   10000 perm   2 sec   (5885 perm/sec)   p_kst 7.012000e-01   p_cons 1.633000e-01   p_joint 5.540000e-01

Outputting figure to mutsig2_images.part000000000151/RSRC2.3_1379_10000_0.7012_0.1633_0.554.png
                gene_name: RSRC2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 57 percent done.
RTCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
KS ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
RTCD1   10000 perm   2 sec   (6378 perm/sec)   p_kst 9.570000e-01   p_cons 9.310000e-02   p_joint 2.630000e-01

Joint ci ratio: 3.437657e-02	ci left: 3.871690e-01	ci right 4.007619e-01	k: 7879	n:20000
Cons ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
KS ci ratio: 5.959961e-03	ci left: 9.529110e-01	ci right 9.586556e-01	k: 19117	n:20000
RTCD1   20000 perm   4 sec   (5520 perm/sec)   p_kst 9.558500e-01   p_cons 9.445000e-02   p_joint 3.939500e-01

Outputting figure to mutsig2_images.part000000000151/RTCD1.3_1188_20000_0.95585_0.09445_0.39395.png
                gene_name: RTCD1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 59 percent done.
RTDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
Cons ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
KS ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
RTDR1   10000 perm   2 sec   (6129 perm/sec)   p_kst 5.540000e-02   p_cons 3.048000e-01   p_joint 1.410000e-01

Joint ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
Cons ci ratio: 4.002878e-02	ci left: 3.175647e-01	ci right 3.305865e-01	k: 6481	n:20000
KS ci ratio: 1.117051e-01	ci left: 5.475129e-02	ci right 6.127794e-02	k: 1159	n:20000
RTDR1   20000 perm   4 sec   (5380 perm/sec)   p_kst 5.795000e-02   p_cons 3.240500e-01   p_joint 1.109500e-01

Joint ci ratio: 6.758306e-02	ci left: 9.741531e-02	ci right 1.042622e-01	k: 3024	n:30000
Cons ci ratio: 3.285823e-02	ci left: 3.164480e-01	ci right 3.270532e-01	k: 9652	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
RTDR1   30000 perm   6 sec   (5102 perm/sec)   p_kst 5.750000e-02   p_cons 3.217333e-01   p_joint 1.008000e-01

Outputting figure to mutsig2_images.part000000000151/RTDR1.3_1071_30000_0.0575_0.32173_0.1008.png
                gene_name: RTDR1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 61 percent done.
RUNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
Cons ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
RUNDC1   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.761000e-01   p_cons 8.712000e-01   p_joint 5.542000e-01

Outputting figure to mutsig2_images.part000000000151/RUNDC1.3_1862_10000_0.2761_0.8712_0.5542.png
                gene_name: RUNDC1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 64 percent done.
RUNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
Cons ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
RUNDC3B   10000 perm   2 sec   (6158 perm/sec)   p_kst 4.350000e-01   p_cons 5.522000e-01   p_joint 6.566000e-01

Outputting figure to mutsig2_images.part000000000151/RUNDC3B.3_1470_10000_0.435_0.5522_0.6566.png
                gene_name: RUNDC3B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 66 percent done.
RUVBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
Cons ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
RUVBL2   10000 perm   2 sec   (5913 perm/sec)   p_kst 4.000000e-01   p_cons 5.935000e-01   p_joint 4.341000e-01

Outputting figure to mutsig2_images.part000000000151/RUVBL2.3_1452_10000_0.4_0.5935_0.4341.png
                gene_name: RUVBL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 68 percent done.
S100PBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
Cons ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
KS ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
S100PBP   10000 perm   2 sec   (6363 perm/sec)   p_kst 4.312000e-01   p_cons 8.503000e-01   p_joint 9.661000e-01

Outputting figure to mutsig2_images.part000000000151/S100PBP.3_1256_10000_0.4312_0.8503_0.9661.png
                gene_name: S100PBP
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 70 percent done.
SACM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
KS ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
SACM1L   10000 perm   2 sec   (5820 perm/sec)   p_kst 5.846000e-01   p_cons 6.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/SACM1L.3_1844_10000_0.5846_0.634_1.png
                gene_name: SACM1L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
RSRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
KS ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
RSRC1   10000 perm   2 sec   (6602 perm/sec)   p_kst 6.992000e-01   p_cons 3.203000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RSRC1.2_1041_10000_0.6992_0.3203_1.png
                gene_name: RSRC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RSU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
KS ci ratio: 1.424469e-02	ci left: 8.769477e-01	ci right 8.896281e-01	k: 8834	n:10000
RSU1   10000 perm   1 sec   (7147 perm/sec)   p_kst 8.834000e-01   p_cons 5.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RSU1.2_866_10000_0.8834_0.5082_1.png
                gene_name: RSU1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
RTEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
Cons ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
KS ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
RTEL1   10000 perm   2 sec   (4701 perm/sec)   p_kst 3.490000e-01   p_cons 4.009000e-01   p_joint 3.306000e-01

Outputting figure to mutsig2_images.part000000000151/RTEL1.2_4039_10000_0.349_0.4009_0.3306.png
                gene_name: RTEL1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 80 percent done.
RTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
KS ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
RTP1   10000 perm   1 sec   (6765 perm/sec)   p_kst 6.966000e-01   p_cons 4.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RTP1.2_800_10000_0.6966_0.4084_1.png
                gene_name: RTP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
RUSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
RUSC2   10000 perm   2 sec   (4730 perm/sec)   p_kst 9.489000e-01   p_cons 9.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RUSC2.2_4595_10000_0.9489_0.9656_1.png
                gene_name: RUSC2
               theta_stop: 0.0091 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
RUVBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
Cons ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
RUVBL1   10000 perm   2 sec   (6352 perm/sec)   p_kst 4.791000e-01   p_cons 2.900000e-01   p_joint 5.566000e-01

Outputting figure to mutsig2_images.part000000000151/RUVBL1.2_1415_10000_0.4791_0.29_0.5566.png
                gene_name: RUVBL1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 86 percent done.
RWDD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
Cons ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KS ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
RWDD3   10000 perm   1 sec   (6845 perm/sec)   p_kst 8.411000e-01   p_cons 1.720000e-02   p_joint 1.133000e-01

Joint ci ratio: 5.395651e-02	ci left: 2.031351e-01	ci right 2.144497e-01	k: 4175	n:20000
Cons ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
KS ci ratio: 1.205073e-02	ci left: 8.359082e-01	ci right 8.460924e-01	k: 16821	n:20000
RWDD3   20000 perm   3 sec   (5908 perm/sec)   p_kst 8.410500e-01   p_cons 1.845000e-02   p_joint 2.087500e-01

Joint ci ratio: 5.388876e-02	ci left: 1.458779e-01	ci right 1.539900e-01	k: 4497	n:30000
Cons ci ratio: 1.591002e-01	ci left: 1.825353e-02	ci right 2.144042e-02	k: 594	n:30000
KS ci ratio: 9.841045e-03	ci left: 8.368124e-01	ci right 8.451214e-01	k: 25230	n:30000
RWDD3   30000 perm   5 sec   (5578 perm/sec)   p_kst 8.410000e-01   p_cons 1.980000e-02   p_joint 1.499000e-01

Joint ci ratio: 4.661127e-02	ci left: 1.467366e-01	ci right 1.537643e-01	k: 6009	n:40000
Cons ci ratio: 1.367629e-01	ci left: 1.874709e-02	ci right 2.152319e-02	k: 804	n:40000
KS ci ratio: 8.512162e-03	ci left: 8.377072e-01	ci right 8.448932e-01	k: 33653	n:40000
RWDD3   40000 perm   7 sec   (5358 perm/sec)   p_kst 8.413250e-01   p_cons 2.010000e-02   p_joint 1.502250e-01

Joint ci ratio: 1.046418e-01	ci left: 2.586966e-02	ci right 2.874558e-02	k: 1364	n:50000
Cons ci ratio: 1.224645e-01	ci left: 1.884899e-02	ci right 2.132717e-02	k: 1003	n:50000
KS ci ratio: 7.635270e-03	ci left: 8.373214e-01	ci right 8.437590e-01	k: 42028	n:50000
RWDD3   50000 perm   10 sec   (5186 perm/sec)   p_kst 8.405600e-01   p_cons 2.006000e-02   p_joint 2.728000e-02

Joint ci ratio: 9.555458e-02	ci left: 2.597811e-02	ci right 2.860121e-02	k: 1636	n:60000
Cons ci ratio: 1.121656e-01	ci left: 1.882988e-02	ci right 2.108355e-02	k: 1196	n:60000
KS ci ratio: 6.965051e-03	ci left: 8.377974e-01	ci right 8.436696e-01	k: 50445	n:60000
RWDD3   60000 perm   12 sec   (5042 perm/sec)   p_kst 8.407500e-01   p_cons 1.993333e-02   p_joint 2.726667e-02

Joint ci ratio: 5.315740e-02	ci left: 7.016631e-02	ci right 7.401211e-02	k: 5045	n:70000
Cons ci ratio: 1.037506e-01	ci left: 1.894783e-02	ci right 2.103508e-02	k: 1398	n:70000
KS ci ratio: 6.425822e-03	ci left: 8.389602e-01	ci right 8.443828e-01	k: 58918	n:70000
RWDD3   70000 perm   14 sec   (4905 perm/sec)   p_kst 8.416857e-01   p_cons 1.997143e-02   p_joint 7.207143e-02

Joint ci ratio: 4.385898e-02	ci left: 8.879284e-02	ci right 9.278689e-02	k: 7262	n:80000
Cons ci ratio: 9.720060e-02	ci left: 1.895564e-02	ci right 2.090440e-02	k: 1593	n:80000
KS ci ratio: 6.027661e-03	ci left: 8.383845e-01	ci right 8.434657e-01	k: 67275	n:80000
RWDD3   80000 perm   17 sec   (4771 perm/sec)   p_kst 8.409375e-01   p_cons 1.991250e-02   p_joint 9.077500e-02

Outputting figure to mutsig2_images.part000000000151/RWDD3.2_835_80000_0.84094_0.019912_0.090775.png
                gene_name: RWDD3
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.093 

Current progress: 89 percent done.
RXFP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
Cons ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
KS ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
RXFP4   10000 perm   1 sec   (6885 perm/sec)   p_kst 1.280000e-01   p_cons 1.187000e-01   p_joint 5.060000e-02

Joint ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
Cons ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
KS ci ratio: 7.173704e-02	ci left: 1.252205e-01	ci right 1.345874e-01	k: 2597	n:20000
RXFP4   20000 perm   3 sec   (5946 perm/sec)   p_kst 1.298500e-01   p_cons 1.225000e-01   p_joint 1.220500e-01

Outputting figure to mutsig2_images.part000000000151/RXFP4.2_1128_20000_0.12985_0.1225_0.12205.png
                gene_name: RXFP4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 91 percent done.
RYBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
Cons ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
KS ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
RYBP   10000 perm   1 sec   (6930 perm/sec)   p_kst 8.006000e-01   p_cons 8.738000e-01   p_joint 8.188000e-01

Outputting figure to mutsig2_images.part000000000151/RYBP.2_673_10000_0.8006_0.8738_0.8188.png
                gene_name: RYBP
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 93 percent done.
S100A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
S100A4   10000 perm   1 sec   (7228 perm/sec)   p_kst 5.025000e-01   p_cons 6.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/S100A4.2_314_10000_0.5025_0.6893_1.png
                gene_name: S100A4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
S100A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
S100A7   10000 perm   1 sec   (7243 perm/sec)   p_kst 1.633000e-01   p_cons 8.424000e-01   p_joint 5.570000e-01

Outputting figure to mutsig2_images.part000000000151/S100A7.2_314_10000_0.1633_0.8424_0.557.png
                gene_name: S100A7
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 98 percent done.
S100A7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
Cons ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
KS ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
S100A7L2   10000 perm   1 sec   (7202 perm/sec)   p_kst 6.145000e-01   p_cons 4.038000e-01   p_joint 4.624000e-01

Outputting figure to mutsig2_images.part000000000151/S100A7L2.2_351_10000_0.6145_0.4038_0.4624.png
                gene_name: S100A7L2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000151
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 151 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1534>
Subject: Job 4422451: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1534>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000152> was used as the working directory.
Started at Wed Oct 24 18:06:52 2012
Results reported at Wed Oct 24 18:20:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000152.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000152.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 152  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000152.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1005.80 sec.
    Max Memory :      5316 MB
    Max Swap   :      7655 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
152
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 152
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 152: processing genes 13662 - 13751
Calculating significance of each gene.
Using projection method.
13662	SAE1	8.330324e-01
13663	SAFB	8.732154e-01
13664	SAFB2	8.341517e-01
13665	SAG	3.924135e-01
13666	SAGE1	8.704654e-04
13667	SALL1	1
13668	SALL2	9.962234e-01
13669	SALL3	1
In gene SALL4 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 3168    n = 1	mu =   4.02e-07
13670	SALL4	9.224561e-01
13671	SAMD1	1
13672	SAMD10	2.566936e-01
13673	SAMD11	1
13674	SAMD12	4.542609e-01
13675	SAMD13	1
13676	SAMD14	8.555232e-01
13677	SAMD3	1.229002e-01
13678	SAMD4A	9.046705e-01
13679	SAMD4B	1
13680	SAMD5	1
13681	SAMD7	1.483939e-04
13682	SAMD8	6.452608e-01
In gene SAMD9 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 4774    n = 1	mu =   3.35e-07
13683	SAMD9	8.718186e-01
13684	SAMD9L	9.989441e-01
13685	SAMHD1	5.718589e-01
13686	SAMM50	5.412043e-01
13687	SAMSN1	1
13688	SAP130	9.067389e-01
13689	SAP18	6.810909e-01
13690	SAP30	6.631350e-01
13691	SAP30BP	6.733561e-02
13692	SAP30L	1
13693	SAPS1	3.276876e-01
13694	SAPS2	9.567113e-01
13695	SAPS3	1
13696	SAR1A	1
13697	SAR1B	1
13698	SARDH	8.225540e-01
13699	SARM1	8.056833e-01
13700	SARNP	1
13701	SARS	7.567790e-01
13702	SARS2	1
13703	SART1	8.652374e-01
13704	SART3	1
13705	SASH1	9.364171e-01
13706	SASH3	5.848932e-01
13707	SASS6	7.699380e-01
13708	SAT1	5.656264e-01
13709	SAT2	1
13710	SATB1	4.039274e-01
13711	SATB2	2.031181e-05
13712	SATL1	5.827415e-01
13713	SAV1	5.359506e-01
13714	SBDS	3.196764e-01
13715	SBF1	9.954644e-01
13716	SBF2	9.906032e-01
13717	SBK1	2.510207e-01
13718	SBK2	1
13719	SBNO1	7.375979e-01
13720	SBNO2	9.121353e-01
13721	SBSN	1.101604e-01
13722	SC4MOL	3.580278e-01
13723	SC5DL	2.529634e-01
13724	SC65	6.752702e-01
13725	SCAF1	9.827536e-01
13726	SCAI	4.591848e-01
13727	SCAMP1	1
13728	SCAMP2	8.363455e-01
13729	SCAMP3	1.187918e-01
13730	SCAMP4	6.855567e-01
13731	SCAMP5	7.372509e-01
13732	SCAND3	1.743086e-01
13733	SCAP	9.392354e-01
13734	SCAPER	7.554401e-01
13735	SCARA3	9.467560e-01
13736	SCARA5	5.762292e-01
13737	SCARB1	1
13738	SCARB2	1
13739	SCARF1	1
13740	SCARF2	7.337866e-01
13741	SCCPDH	2.326644e-01
13742	SCD	1
13743	SCD5	9.143965e-01
13744	SCEL	9.600323e-01
13745	SCFD1	8.117049e-01
13746	SCFD2	8.379231e-01
13747	SCG2	2.800360e-02
13748	SCG3	1.120093e-01
13749	SCG5	1
13750	SCGB1A1	1
13751	SCGB1C1	1.876552e-01
Done

Running MutSig 2:
Scatter job 152: processing genes 13662 - 13751
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
Cons ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
KS ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
SALL1   10000 perm   3 sec   (3273 perm/sec)   p_kst 7.259000e-01   p_cons 2.785000e-01   p_joint 6.298000e-01

Outputting figure to mutsig2_images.part000000000152/SALL1.27_3987_10000_0.7259_0.2785_0.6298.png
                gene_name: SALL1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
SAMD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
Cons ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
SAMD9   10000 perm   3 sec   (3301 perm/sec)   p_kst 7.197000e-01   p_cons 7.887000e-01   p_joint 8.949000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD9.21_4774_10000_0.7197_0.7887_0.8949.png
                gene_name: SAMD9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 4 percent done.
SATB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
Cons ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
KS ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
SATB2   10000 perm   2 sec   (4182 perm/sec)   p_kst 6.339000e-01   p_cons 7.419000e-01   p_joint 8.694000e-01

Outputting figure to mutsig2_images.part000000000152/SATB2.18_2242_10000_0.6339_0.7419_0.8694.png
                gene_name: SATB2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 5 percent done.
SALL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
Cons ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
KS ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
SALL4   10000 perm   2 sec   (4100 perm/sec)   p_kst 3.901000e-01   p_cons 1.443000e-01   p_joint 1.787000e-01

Outputting figure to mutsig2_images.part000000000152/SALL4.16_3178_10000_0.3901_0.1443_0.1787.png
                gene_name: SALL4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 7 percent done.
SAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.408979e-03	ci left: 9.409733e-01	ci right 9.499650e-01	k: 9456	n:10000
Cons ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
KS ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
SAGE1   10000 perm   2 sec   (4164 perm/sec)   p_kst 7.674000e-01   p_cons 7.082000e-01   p_joint 9.456000e-01

Outputting figure to mutsig2_images.part000000000152/SAGE1.13_2791_10000_0.7674_0.7082_0.9456.png
                gene_name: SAGE1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 9 percent done.
SAMD9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
KS ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
SAMD9L   10000 perm   3 sec   (3716 perm/sec)   p_kst 2.023000e-01   p_cons 3.557000e-01   p_joint 2.753000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD9L.11_4759_10000_0.2023_0.3557_0.2753.png
                gene_name: SAMD9L
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
SAMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
SAMD7   10000 perm   2 sec   (5270 perm/sec)   p_kst 8.943000e-01   p_cons 4.802000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMD7.10_1369_10000_0.8943_0.4802_1.png
                gene_name: SAMD7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SCAND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
Cons ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
KS ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
SCAND3   10000 perm   2 sec   (4464 perm/sec)   p_kst 8.830000e-02   p_cons 4.011000e-01   p_joint 1.812000e-01

Joint ci ratio: 6.923156e-02	ci left: 1.333464e-01	ci right 1.429590e-01	k: 2762	n:20000
Cons ci ratio: 3.269084e-02	ci left: 4.113511e-01	ci right 4.250726e-01	k: 8364	n:20000
KS ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
SCAND3   20000 perm   5 sec   (4034 perm/sec)   p_kst 8.985000e-02   p_cons 4.182000e-01   p_joint 1.381000e-01

Outputting figure to mutsig2_images.part000000000152/SCAND3.10_3994_20000_0.08985_0.4182_0.1381.png
                gene_name: SCAND3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 14 percent done.
SCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
Cons ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
KS ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
SCG2   10000 perm   2 sec   (4876 perm/sec)   p_kst 1.296000e-01   p_cons 1.270000e-02   p_joint 2.320000e-02

Joint ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
Cons ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
KS ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
SCG2   20000 perm   5 sec   (4372 perm/sec)   p_kst 1.278000e-01   p_cons 1.125000e-02   p_joint 3.435000e-02

Joint ci ratio: 1.523175e-01	ci left: 1.995267e-02	ci right 2.327421e-02	k: 647	n:30000
Cons ci ratio: 2.071094e-01	ci left: 1.057722e-02	ci right 1.305201e-02	k: 353	n:30000
KS ci ratio: 5.827301e-02	ci left: 1.272341e-01	ci right 1.349041e-01	k: 3931	n:30000
SCG2   30000 perm   7 sec   (4160 perm/sec)   p_kst 1.310333e-01   p_cons 1.176667e-02   p_joint 2.156667e-02

Joint ci ratio: 1.432551e-01	ci left: 1.705728e-02	ci right 1.971329e-02	k: 734	n:40000
Cons ci ratio: 1.774699e-01	ci left: 1.097988e-02	ci right 1.314182e-02	k: 481	n:40000
KS ci ratio: 5.027677e-02	ci left: 1.285982e-01	ci right 1.352553e-01	k: 5276	n:40000
SCG2   40000 perm   10 sec   (4035 perm/sec)   p_kst 1.319000e-01   p_cons 1.202500e-02   p_joint 1.835000e-02

Joint ci ratio: 1.393488e-01	ci left: 1.449336e-02	ci right 1.668340e-02	k: 778	n:50000
Cons ci ratio: 1.589347e-01	ci left: 1.106401e-02	ci right 1.299327e-02	k: 600	n:50000
KS ci ratio: 4.494250e-02	ci left: 1.290841e-01	ci right 1.350387e-01	k: 6602	n:50000
SCG2   50000 perm   13 sec   (3942 perm/sec)   p_kst 1.320400e-01   p_cons 1.200000e-02   p_joint 1.556000e-02

Joint ci ratio: 1.192753e-01	ci left: 1.662762e-02	ci right 1.875273e-02	k: 1060	n:60000
Cons ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
KS ci ratio: 4.097791e-02	ci left: 1.296150e-01	ci right 1.350540e-01	k: 7939	n:60000
SCG2   60000 perm   16 sec   (3853 perm/sec)   p_kst 1.323167e-01   p_cons 1.203333e-02   p_joint 1.766667e-02

Joint ci ratio: 1.119960e-01	ci left: 1.623586e-02	ci right 1.817588e-02	k: 1203	n:70000
Cons ci ratio: 1.350905e-01	ci left: 1.108223e-02	ci right 1.270147e-02	k: 831	n:70000
KS ci ratio: 3.778400e-02	ci left: 1.307476e-01	ci right 1.357971e-01	k: 9328	n:70000
SCG2   70000 perm   19 sec   (3780 perm/sec)   p_kst 1.332571e-01   p_cons 1.187143e-02   p_joint 1.718571e-02

Joint ci ratio: 1.066718e-01	ci left: 1.571378e-02	ci right 1.749653e-02	k: 1327	n:80000
Cons ci ratio: 1.264908e-01	ci left: 1.111164e-02	ci right 1.262407e-02	k: 948	n:80000
KS ci ratio: 3.524787e-02	ci left: 1.315348e-01	ci right 1.362667e-01	k: 10711	n:80000
SCG2   80000 perm   22 sec   (3704 perm/sec)   p_kst 1.338875e-01   p_cons 1.185000e-02   p_joint 1.658750e-02

Joint ci ratio: 1.067718e-01	ci left: 1.396712e-02	ci right 1.555327e-02	k: 1327	n:90000
Cons ci ratio: 1.196901e-01	ci left: 1.107238e-02	ci right 1.249268e-02	k: 1059	n:90000
KS ci ratio: 3.320817e-02	ci left: 1.318359e-01	ci right 1.362989e-01	k: 12065	n:90000
SCG2   90000 perm   25 sec   (3638 perm/sec)   p_kst 1.340556e-01   p_cons 1.176667e-02   p_joint 1.474444e-02

Joint ci ratio: 9.463067e-02	ci left: 1.607107e-02	ci right 1.767713e-02	k: 1686	n:100000
Cons ci ratio: 1.144750e-01	ci left: 1.092610e-02	ci right 1.226245e-02	k: 1158	n:100000
KS ci ratio: 3.163589e-02	ci left: 1.309904e-01	ci right 1.352109e-01	k: 13309	n:100000
SCG2   100000 perm   28 sec   (3574 perm/sec)   p_kst 1.330900e-01   p_cons 1.158000e-02   p_joint 1.686000e-02

Joint ci ratio: 1.093170e-01	ci left: 1.092251e-02	ci right 1.219434e-02	k: 1270	n:110000
Cons ci ratio: 1.094478e-01	ci left: 1.089598e-02	ci right 1.216634e-02	k: 1267	n:110000
KS ci ratio: 3.017078e-02	ci left: 1.310346e-01	ci right 1.350575e-01	k: 14634	n:110000
SCG2   110000 perm   31 sec   (3519 perm/sec)   p_kst 1.330364e-01   p_cons 1.151818e-02   p_joint 1.154545e-02

Joint ci ratio: 8.184357e-02	ci left: 1.799003e-02	ci right 1.953335e-02	k: 2250	n:120000
Cons ci ratio: 1.041907e-01	ci left: 1.105054e-02	ci right 1.227324e-02	k: 1398	n:120000
KS ci ratio: 2.886387e-02	ci left: 1.312988e-01	ci right 1.351523e-01	k: 15986	n:120000
SCG2   120000 perm   35 sec   (3465 perm/sec)   p_kst 1.332167e-01   p_cons 1.165000e-02   p_joint 1.875000e-02

Joint ci ratio: 9.088653e-02	ci left: 1.346609e-02	ci right 1.475572e-02	k: 1833	n:130000
Cons ci ratio: 1.000893e-01	ci left: 1.107751e-02	ci right 1.225211e-02	k: 1515	n:130000
KS ci ratio: 2.747154e-02	ci left: 1.335520e-01	ci right 1.372796e-01	k: 17603	n:130000
SCG2   130000 perm   38 sec   (3413 perm/sec)   p_kst 1.354077e-01   p_cons 1.165385e-02   p_joint 1.410000e-02

Joint ci ratio: 7.616006e-02	ci left: 1.786364e-02	ci right 1.928497e-02	k: 2599	n:140000
Cons ci ratio: 9.646689e-02	ci left: 1.109447e-02	ci right 1.222589e-02	k: 1631	n:140000
KS ci ratio: 2.646752e-02	ci left: 1.336615e-01	ci right 1.372537e-01	k: 18963	n:140000
SCG2   140000 perm   42 sec   (3360 perm/sec)   p_kst 1.354500e-01   p_cons 1.165000e-02   p_joint 1.856429e-02

Outputting figure to mutsig2_images.part000000000152/SCG2.10_1858_140000_0.13545_0.01165_0.018564.png
                gene_name: SCG2
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 16 percent done.
SBNO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
Cons ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
KS ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
SBNO1   10000 perm   2 sec   (4054 perm/sec)   p_kst 3.571000e-01   p_cons 2.236000e-01   p_joint 4.368000e-01

Outputting figure to mutsig2_images.part000000000152/SBNO1.8_4306_10000_0.3571_0.2236_0.4368.png
                gene_name: SBNO1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 18 percent done.
SASH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
Cons ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
KS ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
SASH1   10000 perm   2 sec   (4386 perm/sec)   p_kst 7.640000e-02   p_cons 8.980000e-02   p_joint 1.256000e-01

Joint ci ratio: 7.543644e-02	ci left: 1.144449e-01	ci right 1.234662e-01	k: 2378	n:20000
Cons ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
KS ci ratio: 9.473848e-02	ci left: 7.510243e-02	ci right 8.262055e-02	k: 1576	n:20000
SASH1   20000 perm   5 sec   (3982 perm/sec)   p_kst 7.880000e-02   p_cons 8.805000e-02   p_joint 1.189000e-01

Outputting figure to mutsig2_images.part000000000152/SASH1.7_3824_20000_0.0788_0.08805_0.1189.png
                gene_name: SASH1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 19 percent done.
SBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
SBF2   10000 perm   3 sec   (3668 perm/sec)   p_kst 2.638000e-01   p_cons 6.780000e-02   p_joint 2.050000e-01

Joint ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
Cons ci ratio: 1.024545e-01	ci left: 6.469544e-02	ci right 7.173072e-02	k: 1363	n:20000
KS ci ratio: 4.742782e-02	ci left: 2.485239e-01	ci right 2.606475e-01	k: 5091	n:20000
SBF2   20000 perm   6 sec   (3348 perm/sec)   p_kst 2.545500e-01   p_cons 6.815000e-02   p_joint 1.330000e-01

Joint ci ratio: 5.859067e-02	ci left: 1.260162e-01	ci right 1.336556e-01	k: 3894	n:30000
Cons ci ratio: 8.479409e-02	ci left: 6.367335e-02	ci right 6.934429e-02	k: 1994	n:30000
KS ci ratio: 3.906436e-02	ci left: 2.463661e-01	ci right 2.562154e-01	k: 7538	n:30000
SBF2   30000 perm   9 sec   (3234 perm/sec)   p_kst 2.512667e-01   p_cons 6.646667e-02   p_joint 1.298000e-01

Outputting figure to mutsig2_images.part000000000152/SBF2.7_5710_30000_0.25127_0.066467_0.1298.png
                gene_name: SBF2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 21 percent done.
SALL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
Cons ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
SALL3   10000 perm   2 sec   (4638 perm/sec)   p_kst 3.709000e-01   p_cons 5.102000e-01   p_joint 7.244000e-01

Outputting figure to mutsig2_images.part000000000152/SALL3.6_3915_10000_0.3709_0.5102_0.7244.png
                gene_name: SALL3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 23 percent done.
SATB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
SATB1   10000 perm   2 sec   (5025 perm/sec)   p_kst 3.108000e-01   p_cons 2.851000e-01   p_joint 3.013000e-01

Outputting figure to mutsig2_images.part000000000152/SATB1.6_2332_10000_0.3108_0.2851_0.3013.png
                gene_name: SATB1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
SATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
SATL1   10000 perm   2 sec   (5342 perm/sec)   p_kst 4.836000e-01   p_cons 6.428000e-01   p_joint 7.266000e-01

Outputting figure to mutsig2_images.part000000000152/SATL1.6_1919_10000_0.4836_0.6428_0.7266.png
                gene_name: SATL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 26 percent done.
SBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
Cons ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
KS ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
SBF1   10000 perm   2 sec   (4157 perm/sec)   p_kst 1.799000e-01   p_cons 9.153000e-01   p_joint 4.430000e-01

Outputting figure to mutsig2_images.part000000000152/SBF1.6_5846_10000_0.1799_0.9153_0.443.png
                gene_name: SBF1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 28 percent done.
SCAPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
Cons ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
SCAPER   10000 perm   2 sec   (4100 perm/sec)   p_kst 8.064000e-01   p_cons 8.356000e-01   p_joint 9.450000e-01

Outputting figure to mutsig2_images.part000000000152/SCAPER.6_4365_10000_0.8064_0.8356_0.945.png
                gene_name: SCAPER
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 30 percent done.
SAMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
Cons ci ratio: 1.896790e-02	ci left: 8.024758e-01	ci right 8.179431e-01	k: 8103	n:10000
KS ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
SAMD3   10000 perm   2 sec   (6046 perm/sec)   p_kst 4.552000e-01   p_cons 8.103000e-01   p_joint 5.800000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD3.5_1619_10000_0.4552_0.8103_0.58.png
                gene_name: SAMD3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 32 percent done.
SAP30BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
Cons ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
KS ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
SAP30BP   10000 perm   2 sec   (6439 perm/sec)   p_kst 4.385000e-01   p_cons 6.714000e-01   p_joint 5.945000e-01

Outputting figure to mutsig2_images.part000000000152/SAP30BP.5_971_10000_0.4385_0.6714_0.5945.png
                gene_name: SAP30BP
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 33 percent done.
SAPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
Cons ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
KS ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
SAPS1   10000 perm   2 sec   (4903 perm/sec)   p_kst 5.548000e-01   p_cons 6.207000e-01   p_joint 7.225000e-01

Outputting figure to mutsig2_images.part000000000152/SAPS1.5_2738_10000_0.5548_0.6207_0.7225.png
                gene_name: SAPS1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 35 percent done.
SARDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.294424e-01	ci left: 7.853799e-02	ci right 8.950576e-02	k: 839	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
SARDH   10000 perm   2 sec   (5715 perm/sec)   p_kst 2.250000e-02   p_cons 8.393000e-01   p_joint 8.390000e-02

Joint ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
Cons ci ratio: 1.174285e-02	ci left: 8.427968e-01	ci right 8.528019e-01	k: 16957	n:20000
KS ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
SARDH   20000 perm   4 sec   (5053 perm/sec)   p_kst 2.125000e-02   p_cons 8.478500e-01   p_joint 5.665000e-02

Joint ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
Cons ci ratio: 9.661386e-03	ci left: 8.417306e-01	ci right 8.499356e-01	k: 25376	n:30000
KS ci ratio: 1.532874e-01	ci left: 1.969600e-02	ci right 2.299760e-02	k: 639	n:30000
SARDH   30000 perm   6 sec   (4810 perm/sec)   p_kst 2.130000e-02   p_cons 8.458667e-01   p_joint 4.983333e-02

Joint ci ratio: 8.593212e-02	ci left: 4.732112e-02	ci right 5.159459e-02	k: 1977	n:40000
Cons ci ratio: 8.541630e-03	ci left: 8.367738e-01	ci right 8.439767e-01	k: 33616	n:40000
KS ci ratio: 1.343967e-01	ci left: 1.942380e-02	ci right 2.224637e-02	k: 832	n:40000
SARDH   40000 perm   9 sec   (4650 perm/sec)   p_kst 2.080000e-02   p_cons 8.404000e-01   p_joint 4.942500e-02

Joint ci ratio: 9.433693e-02	ci left: 3.180313e-02	ci right 3.497135e-02	k: 1668	n:50000
Cons ci ratio: 7.469401e-03	ci left: 8.431691e-01	ci right 8.495106e-01	k: 42318	n:50000
KS ci ratio: 1.192902e-01	ci left: 1.987756e-02	ci right 2.241846e-02	k: 1056	n:50000
SARDH   50000 perm   11 sec   (4503 perm/sec)   p_kst 2.112000e-02   p_cons 8.463600e-01   p_joint 3.336000e-02

Joint ci ratio: 8.600214e-02	ci left: 3.202553e-02	ci right 3.491983e-02	k: 2007	n:60000
Cons ci ratio: 6.787785e-03	ci left: 8.446319e-01	ci right 8.504011e-01	k: 50852	n:60000
KS ci ratio: 1.080898e-01	ci left: 2.028938e-02	ci right 2.262389e-02	k: 1286	n:60000
SARDH   60000 perm   14 sec   (4385 perm/sec)   p_kst 2.143333e-02   p_cons 8.475333e-01   p_joint 3.345000e-02

Joint ci ratio: 7.028790e-02	ci left: 4.104555e-02	ci right 4.404966e-02	k: 2977	n:70000
Cons ci ratio: 6.277418e-03	ci left: 8.451318e-01	ci right 8.504679e-01	k: 59347	n:70000
KS ci ratio: 9.991895e-02	ci left: 2.043824e-02	ci right 2.260167e-02	k: 1505	n:70000
SARDH   70000 perm   16 sec   (4296 perm/sec)   p_kst 2.150000e-02   p_cons 8.478143e-01   p_joint 4.252857e-02

Outputting figure to mutsig2_images.part000000000152/SARDH.5_2837_70000_0.0215_0.84781_0.042529.png
                gene_name: SARDH
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 37 percent done.
SBSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
KS ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
SBSN   10000 perm   2 sec   (5542 perm/sec)   p_kst 3.750000e-02   p_cons 1.395000e-01   p_joint 4.000000e-02

Joint ci ratio: 1.299748e-01	ci left: 4.066614e-02	ci right 4.636753e-02	k: 869	n:20000
Cons ci ratio: 6.771760e-02	ci left: 1.386191e-01	ci right 1.483848e-01	k: 2869	n:20000
KS ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
SBSN   20000 perm   4 sec   (4921 perm/sec)   p_kst 3.615000e-02   p_cons 1.434500e-01   p_joint 4.345000e-02

Joint ci ratio: 1.187190e-01	ci left: 3.298122e-02	ci right 3.717611e-02	k: 1051	n:30000
Cons ci ratio: 5.308590e-02	ci left: 1.497018e-01	ci right 1.578987e-01	k: 4613	n:30000
KS ci ratio: 1.161132e-01	ci left: 3.447105e-02	ci right 3.875263e-02	k: 1097	n:30000
SBSN   30000 perm   6 sec   (4673 perm/sec)   p_kst 3.656667e-02   p_cons 1.537667e-01   p_joint 3.503333e-02

Joint ci ratio: 9.687349e-02	ci left: 3.741683e-02	ci right 4.125042e-02	k: 1572	n:40000
Cons ci ratio: 4.609789e-02	ci left: 1.495593e-01	ci right 1.566412e-01	k: 6123	n:40000
KS ci ratio: 9.992147e-02	ci left: 3.519574e-02	ci right 3.892185e-02	k: 1481	n:40000
SBSN   40000 perm   9 sec   (4531 perm/sec)   p_kst 3.702500e-02   p_cons 1.530750e-01   p_joint 3.930000e-02

Outputting figure to mutsig2_images.part000000000152/SBSN.5_1789_40000_0.037025_0.15307_0.0393.png
                gene_name: SBSN
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 39 percent done.
SCG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
SCG3   10000 perm   2 sec   (5763 perm/sec)   p_kst 7.306000e-01   p_cons 7.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCG3.5_1455_10000_0.7306_0.745_1.png
                gene_name: SCG3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
SAMHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
SAMHD1   10000 perm   2 sec   (5381 perm/sec)   p_kst 2.425000e-01   p_cons 8.610000e-02   p_joint 1.950000e-01

Joint ci ratio: 6.290290e-02	ci left: 1.574610e-01	ci right 1.677373e-01	k: 3251	n:20000
Cons ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
KS ci ratio: 4.803522e-02	ci left: 2.437626e-01	ci right 2.558102e-01	k: 4995	n:20000
SAMHD1   20000 perm   4 sec   (4805 perm/sec)   p_kst 2.497500e-01   p_cons 8.420000e-02   p_joint 1.625500e-01

Outputting figure to mutsig2_images.part000000000152/SAMHD1.4_1945_20000_0.24975_0.0842_0.16255.png
                gene_name: SAMHD1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 42 percent done.
SAMM50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
Cons ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
KS ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
SAMM50   10000 perm   2 sec   (6202 perm/sec)   p_kst 4.505000e-01   p_cons 5.245000e-01   p_joint 5.142000e-01

Outputting figure to mutsig2_images.part000000000152/SAMM50.4_1470_10000_0.4505_0.5245_0.5142.png
                gene_name: SAMM50
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 44 percent done.
SART3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
Cons ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
KS ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
SART3   10000 perm   2 sec   (5343 perm/sec)   p_kst 5.350000e-02   p_cons 1.154000e-01   p_joint 7.750000e-02

Joint ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
Cons ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
KS ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
SART3   20000 perm   4 sec   (4738 perm/sec)   p_kst 5.235000e-02   p_cons 1.177000e-01   p_joint 3.845000e-02

Joint ci ratio: 1.158942e-01	ci left: 3.460064e-02	ci right 3.888967e-02	k: 1101	n:30000
Cons ci ratio: 6.202383e-02	ci left: 1.138437e-01	ci right 1.211639e-01	k: 3524	n:30000
KS ci ratio: 9.509857e-02	ci left: 5.104544e-02	ci right 5.617477e-02	k: 1607	n:30000
SART3   30000 perm   7 sec   (4505 perm/sec)   p_kst 5.356667e-02   p_cons 1.174667e-01   p_joint 3.670000e-02

Joint ci ratio: 1.225262e-01	ci left: 2.341930e-02	ci right 2.650019e-02	k: 997	n:40000
Cons ci ratio: 5.658507e-02	ci left: 1.040856e-01	ci right 1.101716e-01	k: 4284	n:40000
KS ci ratio: 8.282857e-02	ci left: 5.082452e-02	ci right 5.524065e-02	k: 2120	n:40000
SART3   40000 perm   9 sec   (4369 perm/sec)   p_kst 5.300000e-02   p_cons 1.071000e-01   p_joint 2.492500e-02

Joint ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
Cons ci ratio: 5.061794e-02	ci left: 1.043825e-01	ci right 1.098232e-01	k: 5354	n:50000
KS ci ratio: 7.402902e-02	ci left: 5.113089e-02	ci right 5.508120e-02	k: 2654	n:50000
SART3   50000 perm   12 sec   (4257 perm/sec)   p_kst 5.308000e-02   p_cons 1.070800e-01   p_joint 3.092000e-02

Outputting figure to mutsig2_images.part000000000152/SART3.4_2968_50000_0.05308_0.10708_0.03092.png
                gene_name: SART3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 46 percent done.
SCAI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
SCAI   10000 perm   2 sec   (5611 perm/sec)   p_kst 3.640000e-01   p_cons 1.754000e-01   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000152/SCAI.4_1966_10000_0.364_0.1754_0.2972.png
                gene_name: SCAI
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 47 percent done.
SCAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
Cons ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
SCAMP3   10000 perm   2 sec   (6132 perm/sec)   p_kst 4.237000e-01   p_cons 5.441000e-01   p_joint 6.807000e-01

Outputting figure to mutsig2_images.part000000000152/SCAMP3.4_1080_10000_0.4237_0.5441_0.6807.png
                gene_name: SCAMP3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 49 percent done.
SCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
Cons ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
KS ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
SCAP   10000 perm   2 sec   (4610 perm/sec)   p_kst 8.513000e-01   p_cons 2.736000e-01   p_joint 8.396000e-01

Outputting figure to mutsig2_images.part000000000152/SCAP.4_3928_10000_0.8513_0.2736_0.8396.png
                gene_name: SCAP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 51 percent done.
SCEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
SCEL   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.017000e-01   p_cons 7.912000e-01   p_joint 5.459000e-01

Outputting figure to mutsig2_images.part000000000152/SCEL.4_2195_10000_0.2017_0.7912_0.5459.png
                gene_name: SCEL
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
SCFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
SCFD2   10000 perm   2 sec   (5545 perm/sec)   p_kst 9.739000e-01   p_cons 7.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCFD2.4_2091_10000_0.9739_0.7002_1.png
                gene_name: SCFD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
SAFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
Cons ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
SAFB2   10000 perm   2 sec   (5292 perm/sec)   p_kst 7.735000e-01   p_cons 4.466000e-01   p_joint 8.726000e-01

Outputting figure to mutsig2_images.part000000000152/SAFB2.3_2946_10000_0.7735_0.4466_0.8726.png
                gene_name: SAFB2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 56 percent done.
SAG
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
Cons ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
KS ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
SAG   10000 perm   1 sec   (6772 perm/sec)   p_kst 1.805000e-01   p_cons 2.820000e-01   p_joint 1.979000e-01

Outputting figure to mutsig2_images.part000000000152/SAG.2_1278_10000_0.1805_0.282_0.1979.png
                gene_name: SAG
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 58 percent done.
SAMSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
SAMSN1   10000 perm   2 sec   (6278 perm/sec)   p_kst 7.830000e-01   p_cons 4.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMSN1.3_1154_10000_0.783_0.4756_1.png
                gene_name: SAMSN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SAP130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
KS ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
SAP130   10000 perm   2 sec   (5182 perm/sec)   p_kst 5.765000e-01   p_cons 7.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAP130.3_3336_10000_0.5765_0.7132_1.png
                gene_name: SAP130
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
SAP18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
Cons ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
KS ci ratio: 2.166601e-02	ci left: 7.575753e-01	ci right 7.742695e-01	k: 7660	n:10000
SAP18   10000 perm   1 sec   (6965 perm/sec)   p_kst 7.660000e-01   p_cons 1.600000e-02   p_joint 1.805000e-01

Joint ci ratio: 5.459327e-02	ci left: 1.993243e-01	ci right 2.105616e-01	k: 4098	n:20000
Cons ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
KS ci ratio: 1.538428e-02	ci left: 7.585563e-01	ci right 7.703668e-01	k: 15290	n:20000
SAP18   20000 perm   3 sec   (6009 perm/sec)   p_kst 7.645000e-01   p_cons 1.635000e-02   p_joint 2.049000e-01

Joint ci ratio: 4.893609e-02	ci left: 1.718706e-01	ci right 1.805255e-01	k: 5285	n:30000
Cons ci ratio: 1.722679e-01	ci left: 1.550360e-02	ci right 1.845768e-02	k: 508	n:30000
KS ci ratio: 1.252168e-02	ci left: 7.607977e-01	ci right 7.704175e-01	k: 22969	n:30000
SAP18   30000 perm   5 sec   (5687 perm/sec)   p_kst 7.656333e-01   p_cons 1.693333e-02   p_joint 1.761667e-01

Joint ci ratio: 3.898666e-02	ci left: 1.978017e-01	ci right 2.056916e-01	k: 8069	n:40000
Cons ci ratio: 1.497134e-01	ci left: 1.558726e-02	ci right 1.813357e-02	k: 673	n:40000
KS ci ratio: 1.084284e-02	ci left: 7.614923e-01	ci right 7.698191e-01	k: 30627	n:40000
SAP18   40000 perm   7 sec   (5454 perm/sec)   p_kst 7.656750e-01   p_cons 1.682500e-02   p_joint 2.017250e-01

Joint ci ratio: 3.836661e-02	ci left: 1.693959e-01	ci right 1.760421e-01	k: 8635	n:50000
Cons ci ratio: 1.366132e-01	ci left: 1.509227e-02	ci right 1.732441e-02	k: 809	n:50000
KS ci ratio: 9.729340e-03	ci left: 7.607756e-01	ci right 7.682336e-01	k: 38226	n:50000
SAP18   50000 perm   9 sec   (5286 perm/sec)   p_kst 7.645200e-01   p_cons 1.618000e-02   p_joint 1.727000e-01

Joint ci ratio: 3.505488e-02	ci left: 1.694348e-01	ci right 1.754969e-01	k: 10347	n:60000
Cons ci ratio: 1.245153e-01	ci left: 1.523728e-02	ci right 1.727656e-02	k: 974	n:60000
KS ci ratio: 8.903090e-03	ci left: 7.602296e-01	ci right 7.670449e-01	k: 45819	n:60000
SAP18   60000 perm   12 sec   (5133 perm/sec)   p_kst 7.636500e-01   p_cons 1.623333e-02   p_joint 1.724500e-01

Joint ci ratio: 3.253054e-02	ci left: 1.689980e-01	ci right 1.746007e-01	k: 12025	n:70000
Cons ci ratio: 1.164552e-01	ci left: 1.500019e-02	ci right 1.686882e-02	k: 1114	n:70000
KS ci ratio: 8.245760e-03	ci left: 7.603484e-01	ci right 7.666583e-01	k: 53446	n:70000
SAP18   70000 perm   14 sec   (5011 perm/sec)   p_kst 7.635143e-01   p_cons 1.591429e-02   p_joint 1.717857e-01

Joint ci ratio: 3.049252e-02	ci left: 1.685955e-01	ci right 1.738284e-01	k: 13696	n:80000
Cons ci ratio: 1.100488e-01	ci left: 1.475263e-02	ci right 1.648276e-02	k: 1248	n:80000
KS ci ratio: 7.707901e-03	ci left: 7.608033e-01	ci right 7.667026e-01	k: 61101	n:80000
SAP18   80000 perm   16 sec   (4890 perm/sec)   p_kst 7.637625e-01   p_cons 1.560000e-02   p_joint 1.712000e-01

Joint ci ratio: 2.873078e-02	ci left: 1.689209e-01	ci right 1.738559e-01	k: 15424	n:90000
Cons ci ratio: 1.037223e-01	ci left: 1.481130e-02	ci right 1.644236e-02	k: 1405	n:90000
KS ci ratio: 7.260282e-03	ci left: 7.613122e-01	ci right 7.668708e-01	k: 68769	n:90000
SAP18   90000 perm   19 sec   (4785 perm/sec)   p_kst 7.641000e-01   p_cons 1.561111e-02   p_joint 1.713778e-01

Joint ci ratio: 2.721512e-02	ci left: 1.694766e-01	ci right 1.741625e-01	k: 17181	n:100000
Cons ci ratio: 9.843875e-02	ci left: 1.484101e-02	ci right 1.638727e-02	k: 1560	n:100000
KS ci ratio: 6.892676e-03	ci left: 7.611950e-01	ci right 7.664697e-01	k: 76384	n:100000
SAP18   100000 perm   21 sec   (4680 perm/sec)   p_kst 7.638400e-01   p_cons 1.560000e-02   p_joint 1.718100e-01

Outputting figure to mutsig2_images.part000000000152/SAP18.3_535_100000_0.76384_0.0156_0.17181.png
                gene_name: SAP18
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 63 percent done.
SART1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.671024e-03	ci left: 9.593225e-01	ci right 9.668046e-01	k: 9632	n:10000
Cons ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
KS ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
SART1   10000 perm   2 sec   (5670 perm/sec)   p_kst 6.120000e-01   p_cons 8.132000e-01   p_joint 9.632000e-01

Outputting figure to mutsig2_images.part000000000152/SART1.3_2483_10000_0.612_0.8132_0.9632.png
                gene_name: SART1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 65 percent done.
SASS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
KS ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
SASS6   10000 perm   2 sec   (5711 perm/sec)   p_kst 7.487000e-01   p_cons 2.628000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000152/SASS6.3_2042_10000_0.7487_0.2628_0.5897.png
                gene_name: SASS6
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
SBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
SBK1   10000 perm   2 sec   (6178 perm/sec)   p_kst 3.396000e-01   p_cons 2.290000e-01   p_joint 4.035000e-01

Outputting figure to mutsig2_images.part000000000152/SBK1.3_1287_10000_0.3396_0.229_0.4035.png
                gene_name: SBK1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 68 percent done.
SC5DL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
SC5DL   10000 perm   1 sec   (6690 perm/sec)   p_kst 5.304000e-01   p_cons 7.640000e-02   p_joint 5.487000e-01

Joint ci ratio: 1.816502e-02	ci left: 6.931426e-01	ci right 7.058994e-01	k: 13991	n:20000
Cons ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
KS ci ratio: 2.642993e-02	ci left: 5.168003e-01	ci right 5.306928e-01	k: 10475	n:20000
SC5DL   20000 perm   3 sec   (5836 perm/sec)   p_kst 5.237500e-01   p_cons 7.535000e-02   p_joint 6.995500e-01

Outputting figure to mutsig2_images.part000000000152/SC5DL.3_916_20000_0.52375_0.07535_0.69955.png
                gene_name: SC5DL
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 70 percent done.
SCCPDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
KS ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
SCCPDH   10000 perm   2 sec   (6337 perm/sec)   p_kst 2.762000e-01   p_cons 1.653000e-01   p_joint 2.039000e-01

Outputting figure to mutsig2_images.part000000000152/SCCPDH.3_1338_10000_0.2762_0.1653_0.2039.png
                gene_name: SCCPDH
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 72 percent done.
SCD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.754382e-02	ci left: 5.116542e-01	ci right 5.313333e-01	k: 5215	n:10000
Cons ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
KS ci ratio: 5.309370e-02	ci left: 3.433291e-01	ci right 3.621567e-01	k: 3527	n:10000
SCD5   10000 perm   2 sec   (6373 perm/sec)   p_kst 3.527000e-01   p_cons 8.140000e-01   p_joint 5.215000e-01

Outputting figure to mutsig2_images.part000000000152/SCD5.3_1219_10000_0.3527_0.814_0.5215.png
                gene_name: SCD5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 74 percent done.
SAFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
Cons ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
KS ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
SAFB   10000 perm   2 sec   (5819 perm/sec)   p_kst 4.153000e-01   p_cons 2.507000e-01   p_joint 5.697000e-01

Outputting figure to mutsig2_images.part000000000152/SAFB.2_2832_10000_0.4153_0.2507_0.5697.png
                gene_name: SAFB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 75 percent done.
SALL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
Cons ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
SALL2   10000 perm   2 sec   (5515 perm/sec)   p_kst 1.060000e-02   p_cons 5.063000e-01   p_joint 2.295000e-01

Joint ci ratio: 2.682193e-02	ci left: 5.094472e-01	ci right 5.233480e-01	k: 10328	n:20000
Cons ci ratio: 2.637172e-02	ci left: 5.179009e-01	ci right 5.317919e-01	k: 10497	n:20000
KS ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
SALL2   20000 perm   4 sec   (4896 perm/sec)   p_kst 1.005000e-02   p_cons 5.248500e-01   p_joint 5.164000e-01

Joint ci ratio: 2.617832e-02	ci left: 4.220921e-01	ci right 4.333219e-01	k: 12831	n:30000
Cons ci ratio: 2.165627e-02	ci left: 5.163290e-01	ci right 5.276668e-01	k: 15660	n:30000
KS ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
SALL2   30000 perm   6 sec   (4645 perm/sec)   p_kst 9.900000e-03   p_cons 5.220000e-01   p_joint 4.277000e-01

Joint ci ratio: 3.412322e-02	ci left: 2.438236e-01	ci right 2.523131e-01	k: 9922	n:40000
Cons ci ratio: 1.875228e-02	ci left: 5.171659e-01	ci right 5.269809e-01	k: 20883	n:40000
KS ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
SALL2   40000 perm   9 sec   (4480 perm/sec)   p_kst 9.775000e-03   p_cons 5.220750e-01   p_joint 2.480500e-01

Joint ci ratio: 3.042087e-02	ci left: 2.454928e-01	ci right 2.530963e-01	k: 12464	n:50000
Cons ci ratio: 1.675772e-02	ci left: 5.181306e-01	ci right 5.269068e-01	k: 26126	n:50000
KS ci ratio: 1.747807e-01	ci left: 9.089008e-03	ci right 1.084859e-02	k: 497	n:50000
SALL2   50000 perm   11 sec   (4363 perm/sec)   p_kst 9.940000e-03   p_cons 5.225200e-01   p_joint 2.492800e-01

Joint ci ratio: 3.312154e-02	ci left: 1.861225e-01	ci right 1.924076e-01	k: 11355	n:60000
Cons ci ratio: 1.595606e-02	ci left: 4.974576e-01	ci right 5.054756e-01	k: 30088	n:60000
KS ci ratio: 1.580369e-01	ci left: 9.347386e-03	ci right 1.096719e-02	k: 608	n:60000
SALL2   60000 perm   14 sec   (4267 perm/sec)   p_kst 1.013333e-02   p_cons 5.014667e-01   p_joint 1.892500e-01

Joint ci ratio: 3.054334e-02	ci left: 1.875683e-01	ci right 1.934003e-01	k: 13333	n:70000
Cons ci ratio: 1.477320e-02	ci left: 4.977318e-01	ci right 5.051538e-01	k: 35101	n:70000
KS ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
SALL2   70000 perm   17 sec   (4173 perm/sec)   p_kst 1.030000e-02   p_cons 5.014429e-01   p_joint 1.904714e-01

Joint ci ratio: 2.343844e-02	ci left: 2.560166e-01	ci right 2.621009e-01	k: 20724	n:80000
Cons ci ratio: 1.379612e-02	ci left: 4.988040e-01	ci right 5.057458e-01	k: 40182	n:80000
KS ci ratio: 1.349466e-01	ci left: 9.732722e-03	ci right 1.115312e-02	k: 834	n:80000
SALL2   80000 perm   20 sec   (4094 perm/sec)   p_kst 1.042500e-02   p_cons 5.022750e-01   p_joint 2.590500e-01

Joint ci ratio: 1.248973e-02	ci left: 5.192860e-01	ci right 5.258236e-01	k: 47030	n:90000
Cons ci ratio: 1.301516e-02	ci left: 4.986945e-01	ci right 5.052387e-01	k: 45177	n:90000
KS ci ratio: 1.276674e-01	ci left: 9.704435e-03	ci right 1.103852e-02	k: 932	n:90000
SALL2   90000 perm   22 sec   (4015 perm/sec)   p_kst 1.035556e-02   p_cons 5.019667e-01   p_joint 5.225556e-01

Joint ci ratio: 1.710496e-02	ci left: 3.413946e-01	ci right 3.472945e-01	k: 34434	n:100000
Cons ci ratio: 1.235758e-02	ci left: 4.984460e-01	ci right 5.046539e-01	k: 50155	n:100000
KS ci ratio: 1.212145e-01	ci left: 9.722257e-03	ci right 1.098639e-02	k: 1034	n:100000
SALL2   100000 perm   25 sec   (3945 perm/sec)   p_kst 1.034000e-02   p_cons 5.015500e-01   p_joint 3.443400e-01

Joint ci ratio: 1.746902e-02	ci left: 3.112668e-01	ci right 3.167612e-01	k: 34541	n:110000
Cons ci ratio: 1.178604e-02	ci left: 4.984407e-01	ci right 5.043592e-01	k: 55154	n:110000
KS ci ratio: 1.151908e-01	ci left: 9.817709e-03	ci right 1.102649e-02	k: 1145	n:110000
SALL2   110000 perm   28 sec   (3879 perm/sec)   p_kst 1.040909e-02   p_cons 5.014000e-01   p_joint 3.140091e-01

Joint ci ratio: 1.853677e-02	ci left: 2.689685e-01	ci right 2.740092e-01	k: 32578	n:120000
Cons ci ratio: 1.128729e-02	ci left: 4.984335e-01	ci right 5.040997e-01	k: 60152	n:120000
KS ci ratio: 1.095883e-01	ci left: 9.971508e-03	ci right 1.113566e-02	k: 1265	n:120000
SALL2   120000 perm   31 sec   (3812 perm/sec)   p_kst 1.054167e-02   p_cons 5.012667e-01   p_joint 2.714833e-01

Joint ci ratio: 1.782720e-02	ci left: 2.686772e-01	ci right 2.735177e-01	k: 35242	n:130000
Cons ci ratio: 1.084827e-02	ci left: 4.983705e-01	ci right 5.038141e-01	k: 65142	n:130000
KS ci ratio: 1.054251e-01	ci left: 9.967988e-03	ci right 1.108478e-02	k: 1367	n:130000
SALL2   130000 perm   35 sec   (3751 perm/sec)   p_kst 1.051538e-02   p_cons 5.010923e-01   p_joint 2.710923e-01

Joint ci ratio: 1.717655e-02	ci left: 2.688154e-01	ci right 2.734798e-01	k: 37960	n:140000
Cons ci ratio: 1.044828e-02	ci left: 4.987273e-01	ci right 5.039726e-01	k: 70189	n:140000
KS ci ratio: 1.019134e-01	ci left: 9.923913e-03	ci right 1.099651e-02	k: 1463	n:140000
SALL2   140000 perm   38 sec   (3689 perm/sec)   p_kst 1.045000e-02   p_cons 5.013500e-01   p_joint 2.711429e-01

Joint ci ratio: 1.508144e-02	ci left: 3.081854e-01	ci right 3.128752e-01	k: 46579	n:150000
Cons ci ratio: 1.008613e-02	ci left: 4.992064e-01	ci right 5.042736e-01	k: 75261	n:150000
KS ci ratio: 9.850760e-02	ci left: 9.931779e-03	ci right 1.096728e-02	k: 1566	n:150000
SALL2   150000 perm   41 sec   (3627 perm/sec)   p_kst 1.044000e-02   p_cons 5.017400e-01   p_joint 3.105267e-01

Outputting figure to mutsig2_images.part000000000152/SALL2.2_3032_150000_0.01044_0.50174_0.31053.png
                gene_name: SALL2
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.31 

Current progress: 77 percent done.
SAMD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
SAMD10   10000 perm   1 sec   (7154 perm/sec)   p_kst 7.994000e-01   p_cons 2.257000e-01   p_joint 8.936000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD10.2_629_10000_0.7994_0.2257_0.8936.png
                gene_name: SAMD10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 79 percent done.
SAMD4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
Cons ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
KS ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
SAMD4A   10000 perm   2 sec   (5949 perm/sec)   p_kst 7.990000e-01   p_cons 4.829000e-01   p_joint 8.582000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD4A.2_2314_10000_0.799_0.4829_0.8582.png
                gene_name: SAMD4A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 81 percent done.
SAPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
Cons ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
KS ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
SAPS2   10000 perm   2 sec   (5553 perm/sec)   p_kst 3.057000e-01   p_cons 2.909000e-01   p_joint 5.969000e-01

Outputting figure to mutsig2_images.part000000000152/SAPS2.2_2883_10000_0.3057_0.2909_0.5969.png
                gene_name: SAPS2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 82 percent done.
SAPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
KS ci ratio: 8.780620e-03	ci left: 9.479391e-01	ci right 9.563950e-01	k: 9523	n:10000
SAPS3   10000 perm   2 sec   (5877 perm/sec)   p_kst 9.523000e-01   p_cons 5.919000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAPS3.2_2782_10000_0.9523_0.5919_1.png
                gene_name: SAPS3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.449905e-02	ci left: 7.101782e-01	ci right 7.278940e-01	k: 7191	n:10000
KS ci ratio: 3.344290e-02	ci left: 5.689506e-01	ci right 5.884036e-01	k: 5787	n:10000
SARS   10000 perm   2 sec   (6359 perm/sec)   p_kst 5.787000e-01   p_cons 7.191000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SARS.2_1589_10000_0.5787_0.7191_1.png
                gene_name: SARS
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
SASH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
SASH3   10000 perm   1 sec   (6717 perm/sec)   p_kst 4.076000e-01   p_cons 8.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SASH3.2_1175_10000_0.4076_0.8423_1.png
                gene_name: SASH3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
SAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
Cons ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
KS ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
SAV1   10000 perm   2 sec   (6575 perm/sec)   p_kst 2.782000e-01   p_cons 4.284000e-01   p_joint 8.658000e-01

Outputting figure to mutsig2_images.part000000000152/SAV1.2_1172_10000_0.2782_0.4284_0.8658.png
                gene_name: SAV1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 89 percent done.
SBDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
KS ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
SBDS   10000 perm   1 sec   (7407 perm/sec)   p_kst 3.110000e-01   p_cons 1.259000e-01   p_joint 8.460000e-02

Joint ci ratio: 1.041443e-01	ci left: 6.269489e-02	ci right 6.963189e-02	k: 1322	n:20000
Cons ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
KS ci ratio: 4.114672e-02	ci left: 3.056811e-01	ci right 3.185736e-01	k: 6242	n:20000
SBDS   20000 perm   3 sec   (6346 perm/sec)   p_kst 3.121000e-01   p_cons 1.275000e-01   p_joint 6.610000e-02

Joint ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
Cons ci ratio: 5.925686e-02	ci left: 1.235150e-01	ci right 1.310907e-01	k: 3818	n:30000
KS ci ratio: 3.376513e-02	ci left: 3.047353e-01	ci right 3.152349e-01	k: 9299	n:30000
SBDS   30000 perm   5 sec   (5967 perm/sec)   p_kst 3.099667e-01   p_cons 1.272667e-01   p_joint 5.750000e-02

Outputting figure to mutsig2_images.part000000000152/SBDS.2_773_30000_0.30997_0.12727_0.0575.png
                gene_name: SBDS
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 91 percent done.
SC4MOL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 1.793668e-02	ci left: 8.193399e-01	ci right 8.342692e-01	k: 8269	n:10000
SC4MOL   10000 perm   1 sec   (6895 perm/sec)   p_kst 8.269000e-01   p_cons 4.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SC4MOL.2_902_10000_0.8269_0.4756_1.png
                gene_name: SC4MOL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SCAMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010152e-02	ci left: 9.328874e-01	ci right 9.424556e-01	k: 9378	n:10000
Cons ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
KS ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
SCAMP2   10000 perm   1 sec   (6785 perm/sec)   p_kst 6.059000e-01   p_cons 6.298000e-01   p_joint 9.378000e-01

Outputting figure to mutsig2_images.part000000000152/SCAMP2.2_1026_10000_0.6059_0.6298_0.9378.png
                gene_name: SCAMP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
SCARA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
SCARA5   10000 perm   2 sec   (6444 perm/sec)   p_kst 8.785000e-01   p_cons 7.815000e-01   p_joint 9.457000e-01

Outputting figure to mutsig2_images.part000000000152/SCARA5.2_1520_10000_0.8785_0.7815_0.9457.png
                gene_name: SCARA5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
SCARF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
SCARF2   10000 perm   2 sec   (5793 perm/sec)   p_kst 2.100000e-02   p_cons 1.190000e-02   p_joint 3.400000e-03

Joint ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
Cons ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
KS ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
SCARF2   20000 perm   4 sec   (5070 perm/sec)   p_kst 1.935000e-02   p_cons 1.245000e-02   p_joint 4.050000e-03

Joint ci ratio: 3.236258e-01	ci left: 4.080135e-03	ci right 5.684730e-03	k: 145	n:30000
Cons ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
KS ci ratio: 1.600634e-01	ci left: 1.802935e-02	ci right 2.119799e-02	k: 587	n:30000
SCARF2   30000 perm   6 sec   (4858 perm/sec)   p_kst 1.956667e-02   p_cons 1.306667e-02   p_joint 4.833333e-03

Joint ci ratio: 2.837070e-01	ci left: 4.076631e-03	ci right 5.446791e-03	k: 189	n:40000
Cons ci ratio: 1.701186e-01	ci left: 1.198474e-02	ci right 1.423677e-02	k: 523	n:40000
KS ci ratio: 1.389816e-01	ci left: 1.814326e-02	ci right 2.087713e-02	k: 779	n:40000
SCARF2   40000 perm   9 sec   (4705 perm/sec)   p_kst 1.947500e-02   p_cons 1.307500e-02   p_joint 4.725000e-03

Joint ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
Cons ci ratio: 1.242443e-01	ci left: 1.830595e-02	ci right 2.075028e-02	k: 975	n:50000
KS ci ratio: 1.236000e-01	ci left: 1.849986e-02	ci right 2.095634e-02	k: 985	n:50000
SCARF2   50000 perm   11 sec   (4593 perm/sec)   p_kst 1.970000e-02   p_cons 1.950000e-02   p_joint 4.620000e-03

Joint ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
Cons ci ratio: 1.129382e-01	ci left: 1.857058e-02	ci right 2.080955e-02	k: 1180	n:60000
KS ci ratio: 1.115962e-01	ci left: 1.902439e-02	ci right 2.128902e-02	k: 1208	n:60000
SCARF2   60000 perm   13 sec   (4493 perm/sec)   p_kst 2.013333e-02   p_cons 1.966667e-02   p_joint 4.733333e-03

Joint ci ratio: 2.176093e-01	ci left: 4.112208e-03	ci right 5.129526e-03	k: 322	n:70000
Cons ci ratio: 1.049824e-01	ci left: 1.850240e-02	ci right 2.056627e-02	k: 1366	n:70000
KS ci ratio: 1.043997e-01	ci left: 1.871118e-02	ci right 2.078605e-02	k: 1381	n:70000
SCARF2   70000 perm   16 sec   (4404 perm/sec)   p_kst 1.972857e-02   p_cons 1.951429e-02   p_joint 4.600000e-03

Joint ci ratio: 2.070037e-01	ci left: 4.000571e-03	ci right 4.935925e-03	k: 356	n:80000
Cons ci ratio: 9.795571e-02	ci left: 1.866282e-02	ci right 2.059724e-02	k: 1569	n:80000
KS ci ratio: 9.782867e-02	ci left: 1.871162e-02	ci right 2.064843e-02	k: 1573	n:80000
SCARF2   80000 perm   19 sec   (4310 perm/sec)   p_kst 1.966250e-02   p_cons 1.961250e-02   p_joint 4.450000e-03

Joint ci ratio: 1.953178e-01	ci left: 4.020347e-03	ci right 4.900951e-03	k: 400	n:90000
Cons ci ratio: 9.287114e-02	ci left: 1.850886e-02	ci right 2.032230e-02	k: 1746	n:90000
KS ci ratio: 9.268196e-02	ci left: 1.858486e-02	ci right 2.040185e-02	k: 1753	n:90000
SCARF2   90000 perm   21 sec   (4228 perm/sec)   p_kst 1.947778e-02   p_cons 1.940000e-02   p_joint 4.444444e-03

Joint ci ratio: 1.833530e-01	ci left: 4.132759e-03	ci right 4.976374e-03	k: 454	n:100000
Cons ci ratio: 8.760297e-02	ci left: 1.876936e-02	ci right 2.049866e-02	k: 1962	n:100000
KS ci ratio: 8.771699e-02	ci left: 1.872043e-02	ci right 2.044759e-02	k: 1957	n:100000
SCARF2   100000 perm   24 sec   (4154 perm/sec)   p_kst 1.957000e-02   p_cons 1.962000e-02   p_joint 4.540000e-03

Joint ci ratio: 1.763308e-01	ci left: 4.078268e-03	ci right 4.875478e-03	k: 491	n:110000
Cons ci ratio: 8.335507e-02	ci left: 1.888691e-02	ci right 2.053855e-02	k: 2167	n:110000
KS ci ratio: 8.392950e-02	ci left: 1.862868e-02	ci right 2.026952e-02	k: 2138	n:110000
SCARF2   110000 perm   27 sec   (4080 perm/sec)   p_kst 1.943636e-02   p_cons 1.970000e-02   p_joint 4.463636e-03

Joint ci ratio: 1.686232e-01	ci left: 4.105208e-03	ci right 4.869043e-03	k: 537	n:120000
Cons ci ratio: 7.984244e-02	ci left: 1.890485e-02	ci right 2.048515e-02	k: 2362	n:120000
KS ci ratio: 8.024171e-02	ci left: 1.871695e-02	ci right 2.028973e-02	k: 2339	n:120000
SCARF2   120000 perm   30 sec   (4010 perm/sec)   p_kst 1.949167e-02   p_cons 1.968333e-02   p_joint 4.475000e-03

Joint ci ratio: 1.617064e-01	ci left: 4.136027e-03	ci right 4.870960e-03	k: 584	n:130000
Cons ci ratio: 7.649579e-02	ci left: 1.904203e-02	ci right 2.056411e-02	k: 2573	n:130000
KS ci ratio: 7.718698e-02	ci left: 1.870241e-02	ci right 2.021145e-02	k: 2528	n:130000
SCARF2   130000 perm   33 sec   (3937 perm/sec)   p_kst 1.944615e-02   p_cons 1.979231e-02   p_joint 4.492308e-03

Joint ci ratio: 1.560732e-01	ci left: 4.135529e-03	ci right 4.842378e-03	k: 627	n:140000
Cons ci ratio: 7.374035e-02	ci left: 1.905560e-02	ci right 2.052153e-02	k: 2769	n:140000
KS ci ratio: 7.424784e-02	ci left: 1.879611e-02	ci right 2.025246e-02	k: 2732	n:140000
SCARF2   140000 perm   36 sec   (3875 perm/sec)   p_kst 1.951429e-02   p_cons 1.977857e-02   p_joint 4.478571e-03

Joint ci ratio: 1.507650e-01	ci left: 4.148314e-03	ci right 4.831058e-03	k: 672	n:150000
Cons ci ratio: 7.105525e-02	ci left: 1.917956e-02	ci right 2.059908e-02	k: 2982	n:150000
KS ci ratio: 7.183307e-02	ci left: 1.876692e-02	ci right 2.017174e-02	k: 2919	n:150000
SCARF2   150000 perm   39 sec   (3807 perm/sec)   p_kst 1.946000e-02   p_cons 1.988000e-02   p_joint 4.480000e-03

Joint ci ratio: 1.463742e-01	ci left: 4.135767e-03	ci right 4.794888e-03	k: 713	n:160000
Cons ci ratio: 6.888590e-02	ci left: 1.915369e-02	ci right 2.052629e-02	k: 3173	n:160000
KS ci ratio: 6.977709e-02	ci left: 1.866834e-02	ci right 2.002416e-02	k: 3094	n:160000
SCARF2   160000 perm   43 sec   (3737 perm/sec)   p_kst 1.933750e-02   p_cons 1.983125e-02   p_joint 4.456250e-03

Joint ci ratio: 1.425356e-01	ci left: 4.113604e-03	ci right 4.750537e-03	k: 752	n:170000
Cons ci ratio: 6.669183e-02	ci left: 1.925295e-02	ci right 2.058702e-02	k: 3385	n:170000
KS ci ratio: 6.752054e-02	ci left: 1.878433e-02	ci right 2.010272e-02	k: 3304	n:170000
SCARF2   170000 perm   46 sec   (3676 perm/sec)   p_kst 1.943529e-02   p_cons 1.991176e-02   p_joint 4.423529e-03

Joint ci ratio: 1.385454e-01	ci left: 4.120921e-03	ci right 4.739651e-03	k: 796	n:180000
Cons ci ratio: 6.482367e-02	ci left: 1.926526e-02	ci right 2.056138e-02	k: 3583	n:180000
KS ci ratio: 6.545064e-02	ci left: 1.889898e-02	ci right 2.018322e-02	k: 3516	n:180000
SCARF2   180000 perm   50 sec   (3622 perm/sec)   p_kst 1.953333e-02   p_cons 1.990556e-02   p_joint 4.422222e-03

Joint ci ratio: 1.347921e-01	ci left: 4.132777e-03	ci right 4.735129e-03	k: 841	n:190000
Cons ci ratio: 6.298535e-02	ci left: 1.934928e-02	ci right 2.061279e-02	k: 3795	n:190000
KS ci ratio: 6.365594e-02	ci left: 1.894513e-02	ci right 2.019590e-02	k: 3717	n:190000
SCARF2   190000 perm   53 sec   (3567 perm/sec)   p_kst 1.956316e-02   p_cons 1.997368e-02   p_joint 4.426316e-03

Joint ci ratio: 1.320026e-01	ci left: 4.100126e-03	ci right 4.684382e-03	k: 877	n:200000
Cons ci ratio: 6.168090e-02	ci left: 1.918407e-02	ci right 2.040991e-02	k: 3958	n:200000
KS ci ratio: 6.176851e-02	ci left: 1.912990e-02	ci right 2.035408e-02	k: 3947	n:200000
SCARF2   200000 perm   57 sec   (3515 perm/sec)   p_kst 1.973500e-02   p_cons 1.979000e-02   p_joint 4.385000e-03

Joint ci ratio: 1.286742e-01	ci left: 4.116790e-03	ci right 4.687499e-03	k: 923	n:210000
Cons ci ratio: 6.026803e-02	ci left: 1.915212e-02	ci right 2.034691e-02	k: 4146	n:210000
KS ci ratio: 6.020142e-02	ci left: 1.919434e-02	ci right 2.039039e-02	k: 4155	n:210000
SCARF2   210000 perm   61 sec   (3463 perm/sec)   p_kst 1.978571e-02   p_cons 1.974286e-02   p_joint 4.395238e-03

Joint ci ratio: 1.248125e-01	ci left: 4.184951e-03	ci right 4.746410e-03	k: 981	n:220000
Cons ci ratio: 5.878222e-02	ci left: 1.923088e-02	ci right 2.040000e-02	k: 4358	n:220000
KS ci ratio: 5.887185e-02	ci left: 1.917264e-02	ci right 2.034006e-02	k: 4345	n:220000
SCARF2   220000 perm   64 sec   (3412 perm/sec)   p_kst 1.975000e-02   p_cons 1.980909e-02   p_joint 4.459091e-03

Joint ci ratio: 1.221070e-01	ci left: 4.188393e-03	ci right 4.737254e-03	k: 1025	n:230000
Cons ci ratio: 5.760074e-02	ci left: 1.917024e-02	ci right 2.031147e-02	k: 4539	n:230000
KS ci ratio: 5.761369e-02	ci left: 1.916167e-02	ci right 2.030265e-02	k: 4537	n:230000
SCARF2   230000 perm   68 sec   (3363 perm/sec)   p_kst 1.972609e-02   p_cons 1.973478e-02   p_joint 4.456522e-03

Joint ci ratio: 1.194022e-01	ci left: 4.203797e-03	ci right 4.741611e-03	k: 1072	n:240000
Cons ci ratio: 5.657949e-02	ci left: 1.905324e-02	ci right 2.016674e-02	k: 4705	n:240000
KS ci ratio: 5.636000e-02	ci left: 1.920117e-02	ci right 2.031881e-02	k: 4741	n:240000
SCARF2   240000 perm   72 sec   (3318 perm/sec)   p_kst 1.975417e-02   p_cons 1.960417e-02   p_joint 4.466667e-03

Joint ci ratio: 1.176636e-01	ci left: 4.159844e-03	ci right 4.683747e-03	k: 1104	n:250000
Cons ci ratio: 5.556996e-02	ci left: 1.897339e-02	ci right 2.006179e-02	k: 4878	n:250000
KS ci ratio: 5.515631e-02	ci left: 1.925748e-02	ci right 2.035370e-02	k: 4950	n:250000
SCARF2   250000 perm   76 sec   (3275 perm/sec)   p_kst 1.980000e-02   p_cons 1.951200e-02   p_joint 4.416000e-03

Joint ci ratio: 1.155910e-01	ci left: 4.149207e-03	ci right 4.661937e-03	k: 1144	n:260000
Cons ci ratio: 5.450815e-02	ci left: 1.897194e-02	ci right 2.003881e-02	k: 5070	n:260000
KS ci ratio: 5.403727e-02	ci left: 1.930210e-02	ci right 2.037787e-02	k: 5157	n:260000
SCARF2   260000 perm   80 sec   (3233 perm/sec)   p_kst 1.983462e-02   p_cons 1.950000e-02   p_joint 4.400000e-03

Joint ci ratio: 1.134800e-01	ci left: 4.150229e-03	ci right 4.653093e-03	k: 1187	n:270000
Cons ci ratio: 5.344802e-02	ci left: 1.901099e-02	ci right 2.005862e-02	k: 5273	n:270000
KS ci ratio: 5.306448e-02	ci left: 1.928514e-02	ci right 2.034002e-02	k: 5348	n:270000
SCARF2   270000 perm   85 sec   (3192 perm/sec)   p_kst 1.980741e-02   p_cons 1.952963e-02   p_joint 4.396296e-03

Joint ci ratio: 1.111636e-01	ci left: 4.175565e-03	ci right 4.670494e-03	k: 1237	n:280000
Cons ci ratio: 5.244744e-02	ci left: 1.904743e-02	ci right 2.007683e-02	k: 5476	n:280000
KS ci ratio: 5.209445e-02	ci left: 1.930481e-02	ci right 2.034088e-02	k: 5549	n:280000
SCARF2   280000 perm   89 sec   (3145 perm/sec)   p_kst 1.981786e-02   p_cons 1.955714e-02   p_joint 4.417857e-03

Joint ci ratio: 1.095402e-01	ci left: 4.155642e-03	ci right 4.640551e-03	k: 1274	n:290000
Cons ci ratio: 5.151490e-02	ci left: 1.907132e-02	ci right 2.008314e-02	k: 5676	n:290000
KS ci ratio: 5.124852e-02	ci left: 1.926880e-02	ci right 2.028565e-02	k: 5734	n:290000
SCARF2   290000 perm   93 sec   (3106 perm/sec)   p_kst 1.977241e-02   p_cons 1.957241e-02   p_joint 4.393103e-03

Joint ci ratio: 1.075340e-01	ci left: 4.172779e-03	ci right 4.650206e-03	k: 1322	n:300000
Cons ci ratio: 5.068321e-02	ci left: 1.905427e-02	ci right 2.004838e-02	k: 5864	n:300000
KS ci ratio: 5.029537e-02	ci left: 1.934726e-02	ci right 2.034871e-02	k: 5953	n:300000
SCARF2   300000 perm   98 sec   (3067 perm/sec)   p_kst 1.984333e-02   p_cons 1.954667e-02   p_joint 4.406667e-03

Joint ci ratio: 1.055954e-01	ci left: 4.192027e-03	ci right 4.662473e-03	k: 1371	n:310000
Cons ci ratio: 4.985694e-02	ci left: 1.906393e-02	ci right 2.004186e-02	k: 6060	n:310000
KS ci ratio: 4.936900e-02	ci left: 1.943994e-02	ci right 2.042713e-02	k: 6178	n:310000
SCARF2   310000 perm   102 sec   (3027 perm/sec)   p_kst 1.992903e-02   p_cons 1.954839e-02   p_joint 4.422581e-03

Joint ci ratio: 7.792044e-02	ci left: 7.541000e-03	ci right 8.155463e-03	k: 2510	n:320000
Cons ci ratio: 4.912188e-02	ci left: 1.903297e-02	ci right 1.999451e-02	k: 6243	n:320000
KS ci ratio: 4.853067e-02	ci left: 1.949611e-02	ci right 2.046886e-02	k: 6393	n:320000
SCARF2   320000 perm   107 sec   (2990 perm/sec)   p_kst 1.997812e-02   p_cons 1.950937e-02   p_joint 7.843750e-03

Outputting figure to mutsig2_images.part000000000152/SCARF2.2_2657_320000_0.019978_0.019509_0.0078438.png
                gene_name: SCARF2
               theta_stop: 0.078 
                    nperm: 320000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0075 
    ci_joint_bounds_right: 0.0082 

Current progress: 98 percent done.
SCFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
KS ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
SCFD1   10000 perm   2 sec   (6125 perm/sec)   p_kst 8.789000e-01   p_cons 6.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCFD1.2_2029_10000_0.8789_0.6988_1.png
                gene_name: SCFD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000152
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 152 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 4422457: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000153> was used as the working directory.
Started at Wed Oct 24 18:06:52 2012
Results reported at Thu Oct 25 00:23:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000153.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000153.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 153  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000153.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  22884.30 sec.
    Max Memory :      9465 MB
    Max Swap   :     11952 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
153
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 153
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 153: processing genes 13752 - 13842
Calculating significance of each gene.
Using projection method.
13752	SCGB1D1	2.567514e-01
13753	SCGB1D2	3.582874e-01
13754	SCGB1D4	1
13755	SCGB2A1	1
13756	SCGB2A2	1
13757	SCGB3A1	1
13758	SCGB3A2	1
13759	SCGBL	1.469947e-01
13760	SCGN	2.771298e-01
13761	SCHIP1	5.476805e-01
13762	SCIN	8.830589e-01
13763	SCLT1	4.019232e-01
13764	SCLY	8.936817e-01
13765	SCMH1	9.605301e-01
13766	SCML1	7.343126e-01
13767	SCML2	1.411892e-01
13768	SCML4	1.247315e-02
13769	SCN10A	8.289303e-01
13770	SCN11A	4.257891e-01
13771	SCN1A	9.699706e-01
13772	SCN1B	8.149880e-01
13773	SCN2A	6.520989e-01
13774	SCN2B	1
13775	SCN3A	9.809740e-01
13776	SCN3B	6.396746e-01
In gene SCN4A the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 5213    n = 1	mu =   4.02e-07
13777	SCN4A	9.992342e-01
13778	SCN4B	8.301703e-01
13779	SCN5A	9.999912e-01
13780	SCN7A	4.838846e-03
13781	SCN8A	9.881307e-01
In gene SCN9A the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 5544    n = 1	mu =   6.02e-07
13782	SCN9A	9.978843e-01
13783	SCNM1	2.786457e-01
13784	SCNN1A	1
13785	SCNN1B	7.449103e-01
13786	SCNN1D	7.798439e-01
13787	SCNN1G	7.427287e-01
13788	SCO1	7.878209e-01
13789	SCO2	6.352539e-01
13790	SCOC	4.421586e-01
13791	SCP2	6.879961e-01
13792	SCPEP1	1
13793	SCRG1	1.245478e-01
13794	SCRIB	1
13795	SCRN1	2.720429e-01
13796	SCRN2	6.995997e-01
13797	SCRN3	5.704782e-02
13798	SCRT1	1
13799	SCRT2	1
13800	SCTR	8.247092e-01
13801	SCUBE1	1
13802	SCUBE2	9.449188e-01
13803	SCUBE3	1
13804	SCYL1	1
13805	SCYL2	8.807167e-01
13806	SCYL3	9.737652e-01
13807	SDAD1	2.674201e-01
13808	SDC1	1.206262e-01
13809	SDC2	1
13810	SDC3	6.151375e-01
13811	SDC4	1
13812	SDCBP	1
13813	SDCBP2	1
13814	SDCCAG1	9.543228e-01
13815	SDCCAG3	1
13816	SDCCAG8	4.411992e-01
13817	SDF2	7.869322e-01
13818	SDF2L1	1
13819	SDF4	1
13820	SDHA	1
13821	SDHAF2	2.941688e-01
13822	SDHB	7.937853e-01
13823	SDHC	1
13824	SDHD	4.469667e-01
13825	SDK1	1
13826	SDK2	9.915226e-01
13827	SDPR	1.138474e-01
13828	SDR16C5	7.915079e-02
13829	SDR39U1	1
13830	SDR42E1	5.899176e-01
13831	SDR9C7	6.235413e-01
13832	SDS	4.187254e-01
13833	SDSL	7.137803e-01
13834	SEBOX	1
13835	SEC11A	1
13836	SEC11C	7.138149e-01
13837	SEC13	8.454063e-01
13838	SEC14L1	8.801332e-01
13839	SEC14L2	1
13840	SEC14L3	5.592723e-01
13841	SEC14L4	6.587006e-01
13842	SEC14L5	3.843394e-01
Done

Running MutSig 2:
Scatter job 153: processing genes 13752 - 13842
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SCN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
Cons ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
KS ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
SCN2A   10000 perm   3 sec   (3624 perm/sec)   p_kst 9.580000e-02   p_cons 6.127000e-01   p_joint 1.972000e-01

Joint ci ratio: 6.368806e-02	ci left: 1.541543e-01	ci right 1.643450e-01	k: 3184	n:20000
Cons ci ratio: 2.301949e-02	ci left: 5.849503e-01	ci right 5.986230e-01	k: 11836	n:20000
KS ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
SCN2A   20000 perm   8 sec   (2572 perm/sec)   p_kst 1.038000e-01   p_cons 5.918000e-01   p_joint 1.592000e-01

Outputting figure to mutsig2_images.part000000000153/SCN2A.27_6218_20000_0.1038_0.5918_0.1592.png
                gene_name: SCN2A
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
SCN10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
Cons ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
KS ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
SCN10A   10000 perm   3 sec   (3785 perm/sec)   p_kst 3.314000e-01   p_cons 2.838000e-01   p_joint 4.084000e-01

Outputting figure to mutsig2_images.part000000000153/SCN10A.25_5979_10000_0.3314_0.2838_0.4084.png
                gene_name: SCN10A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 4 percent done.
SCN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
SCN3A   10000 perm   3 sec   (3753 perm/sec)   p_kst 5.970000e-02   p_cons 6.308000e-01   p_joint 9.830000e-02

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 2.227429e-02	ci left: 6.007926e-01	ci right 6.143761e-01	k: 12152	n:20000
KS ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
SCN3A   20000 perm   6 sec   (3463 perm/sec)   p_kst 5.720000e-02   p_cons 6.076000e-01   p_joint 1.290000e-01

Joint ci ratio: 6.723751e-02	ci left: 9.833459e-02	ci right 1.052094e-01	k: 3052	n:30000
Cons ci ratio: 1.871411e-02	ci left: 5.883172e-01	ci right 5.994646e-01	k: 17817	n:30000
KS ci ratio: 9.171215e-02	ci left: 5.476155e-02	ci right 6.005790e-02	k: 1721	n:30000
SCN3A   30000 perm   9 sec   (3350 perm/sec)   p_kst 5.736667e-02   p_cons 5.939000e-01   p_joint 1.017333e-01

Outputting figure to mutsig2_images.part000000000153/SCN3A.25_6203_30000_0.057367_0.5939_0.10173.png
                gene_name: SCN3A
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 6 percent done.
SDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
SDK1   10000 perm   3 sec   (3714 perm/sec)   p_kst 2.400000e-03   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
SDK1   20000 perm   6 sec   (3417 perm/sec)   p_kst 2.150000e-03   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
SDK1   30000 perm   9 sec   (3297 perm/sec)   p_kst 2.000000e-03   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
KS ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
SDK1   40000 perm   12 sec   (3228 perm/sec)   p_kst 1.950000e-03   p_cons 7.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.481502e+00	ci left: 4.403912e-05	ci right 2.611710e-04	k: 6	n:50000
KS ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
SDK1   50000 perm   16 sec   (3169 perm/sec)   p_kst 2.200000e-03   p_cons 1.200000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
KS ci ratio: 3.408139e-01	ci left: 1.825792e-03	ci right 2.590305e-03	k: 131	n:60000
SDK1   60000 perm   19 sec   (3114 perm/sec)   p_kst 2.183333e-03   p_cons 1.166667e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.306573e+00	ci left: 4.934171e-05	ci right 2.251759e-04	k: 8	n:70000
KS ci ratio: 3.309666e-01	ci left: 1.669589e-03	ci right 2.344190e-03	k: 139	n:70000
SDK1   70000 perm   23 sec   (3064 perm/sec)   p_kst 1.985714e-03   p_cons 1.142857e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 1.306585e+00	ci left: 4.317386e-05	ci right 1.970303e-04	k: 8	n:80000
KS ci ratio: 3.105652e-01	ci left: 1.679288e-03	ci right 2.307707e-03	k: 158	n:80000
SDK1   80000 perm   26 sec   (3024 perm/sec)   p_kst 1.975000e-03   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 1.306594e+00	ci left: 3.837667e-05	ci right 1.751390e-04	k: 8	n:90000
KS ci ratio: 2.986098e-01	ci left: 1.626103e-03	ci right 2.206754e-03	k: 171	n:90000
SDK1   90000 perm   30 sec   (2985 perm/sec)   p_kst 1.900000e-03   p_cons 8.888889e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 1.306601e+00	ci left: 3.453893e-05	ci right 1.576258e-04	k: 8	n:100000
KS ci ratio: 2.879360e-01	ci left: 1.583927e-03	ci right 2.125621e-03	k: 184	n:100000
SDK1   100000 perm   34 sec   (2949 perm/sec)   p_kst 1.840000e-03   p_cons 8.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.239551e+00	ci left: 3.741314e-05	ci right 1.553107e-04	k: 9	n:110000
KS ci ratio: 2.735282e-01	ci left: 1.608963e-03	ci right 2.126957e-03	k: 204	n:110000
SDK1   110000 perm   38 sec   (2914 perm/sec)   p_kst 1.854545e-03   p_cons 8.181818e-05   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.012072e+00	ci left: 6.378417e-05	ci right 1.957391e-04	k: 14	n:120000
KS ci ratio: 2.587925e-01	ci left: 1.661553e-03	ci right 2.163008e-03	k: 228	n:120000
SDK1   120000 perm   42 sec   (2883 perm/sec)   p_kst 1.900000e-03   p_cons 1.166667e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.012077e+00	ci left: 5.887760e-05	ci right 1.806828e-04	k: 14	n:130000
KS ci ratio: 2.471883e-01	ci left: 1.692251e-03	ci right 2.176552e-03	k: 250	n:130000
SDK1   130000 perm   46 sec   (2852 perm/sec)   p_kst 1.923077e-03   p_cons 1.076923e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 9.506785e-01	ci left: 6.532553e-05	ci right 1.855862e-04	k: 16	n:140000
KS ci ratio: 2.396704e-01	ci left: 1.678690e-03	ci right 2.142329e-03	k: 266	n:140000
SDK1   140000 perm   50 sec   (2825 perm/sec)   p_kst 1.900000e-03   p_cons 1.142857e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 8.992497e-01	ci left: 7.112111e-05	ci right 1.896451e-04	k: 18	n:150000
KS ci ratio: 2.315726e-01	ci left: 1.685969e-03	ci right 2.133635e-03	k: 285	n:150000
SDK1   150000 perm   54 sec   (2791 perm/sec)   p_kst 1.900000e-03   p_cons 1.200000e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 8.992535e-01	ci left: 6.667595e-05	ci right 1.777927e-04	k: 18	n:160000
KS ci ratio: 2.253570e-01	ci left: 1.674872e-03	ci right 2.105998e-03	k: 301	n:160000
SDK1   160000 perm   58 sec   (2764 perm/sec)   p_kst 1.881250e-03   p_cons 1.125000e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
KS ci ratio: 2.189277e-01	ci left: 1.676342e-03	ci right 2.093879e-03	k: 319	n:170000
SDK1   170000 perm   62 sec   (2739 perm/sec)   p_kst 1.876471e-03   p_cons 1.235294e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 7.839434e-01	ci left: 8.543099e-05	ci right 1.983830e-04	k: 24	n:180000
KS ci ratio: 2.136533e-01	ci left: 1.667286e-03	ci right 2.071250e-03	k: 335	n:180000
SDK1   180000 perm   66 sec   (2714 perm/sec)   p_kst 1.861111e-03   p_cons 1.333333e-04   p_joint 0

Joint ci ratio: 3.504992e-01	ci left: 5.428536e-04	ci right 7.780791e-04	k: 124	n:190000
Cons ci ratio: 7.543488e-01	ci left: 8.939169e-05	ci right 2.004990e-04	k: 26	n:190000
KS ci ratio: 2.081509e-01	ci left: 1.669268e-03	ci right 2.061970e-03	k: 353	n:190000
SDK1   190000 perm   71 sec   (2689 perm/sec)   p_kst 1.857895e-03   p_cons 1.368421e-04   p_joint 6.526316e-04

Joint ci ratio: 3.463706e-01	ci left: 5.293975e-04	ci right 7.554840e-04	k: 127	n:200000
Cons ci ratio: 7.278711e-01	ci left: 9.303094e-05	ci right 2.023327e-04	k: 28	n:200000
KS ci ratio: 2.038782e-01	ci left: 1.656934e-03	ci right 2.037737e-03	k: 368	n:200000
SDK1   200000 perm   75 sec   (2664 perm/sec)   p_kst 1.840000e-03   p_cons 1.400000e-04   p_joint 6.350000e-04

Joint ci ratio: 3.477377e-01	ci left: 4.998399e-04	ci right 7.143356e-04	k: 126	n:210000
Cons ci ratio: 6.929102e-01	ci left: 1.003021e-04	ci right 2.095270e-04	k: 31	n:210000
KS ci ratio: 1.985673e-01	ci left: 1.668474e-03	ci right 2.040730e-03	k: 388	n:210000
SDK1   210000 perm   80 sec   (2638 perm/sec)   p_kst 1.847619e-03   p_cons 1.476190e-04   p_joint 6.000000e-04

Joint ci ratio: 3.423892e-01	ci left: 4.937259e-04	ci right 7.016177e-04	k: 130	n:220000
Cons ci ratio: 6.722210e-01	ci left: 1.032553e-04	ci right 2.106494e-04	k: 33	n:220000
KS ci ratio: 1.950897e-01	ci left: 1.653133e-03	ci right 2.014740e-03	k: 402	n:220000
SDK1   220000 perm   84 sec   (2613 perm/sec)   p_kst 1.827273e-03   p_cons 1.500000e-04   p_joint 5.909091e-04

Joint ci ratio: 3.372801e-01	ci left: 4.881666e-04	ci right 6.899829e-04	k: 134	n:230000
Cons ci ratio: 6.625491e-01	ci left: 1.023760e-04	ci right 2.065661e-04	k: 34	n:230000
KS ci ratio: 1.897482e-01	ci left: 1.676443e-03	ci right 2.031951e-03	k: 425	n:230000
SDK1   230000 perm   89 sec   (2587 perm/sec)   p_kst 1.847826e-03   p_cons 1.478261e-04   p_joint 5.826087e-04

Joint ci ratio: 3.335959e-01	ci left: 4.792732e-04	ci right 6.747833e-04	k: 137	n:240000
Cons ci ratio: 6.625512e-01	ci left: 9.811022e-05	ci right 1.979594e-04	k: 34	n:240000
KS ci ratio: 1.858624e-01	ci left: 1.678065e-03	ci right 2.025808e-03	k: 443	n:240000
SDK1   240000 perm   94 sec   (2561 perm/sec)   p_kst 1.845833e-03   p_cons 1.416667e-04   p_joint 5.708333e-04

Joint ci ratio: 3.323970e-01	ci left: 4.637672e-04	ci right 6.521263e-04	k: 138	n:250000
Cons ci ratio: 6.443951e-01	ci left: 1.008578e-04	ci right 1.993512e-04	k: 36	n:250000
KS ci ratio: 1.820087e-01	ci left: 1.683444e-03	ci right 2.024271e-03	k: 462	n:250000
SDK1   250000 perm   99 sec   (2537 perm/sec)   p_kst 1.848000e-03   p_cons 1.440000e-04   p_joint 5.520000e-04

Joint ci ratio: 3.210463e-01	ci left: 4.812388e-04	ci right 6.686477e-04	k: 148	n:260000
Cons ci ratio: 6.358603e-01	ci left: 1.001997e-04	ci right 1.961471e-04	k: 37	n:260000
KS ci ratio: 1.765596e-01	ci left: 1.725233e-03	ci right 2.062948e-03	k: 491	n:260000
SDK1   260000 perm   103 sec   (2513 perm/sec)   p_kst 1.888462e-03   p_cons 1.423077e-04   p_joint 5.692308e-04

Joint ci ratio: 3.147710e-01	ci left: 4.838646e-04	ci right 6.678721e-04	k: 154	n:270000
Cons ci ratio: 6.121535e-01	ci left: 1.058413e-04	ci right 2.017303e-04	k: 40	n:270000
KS ci ratio: 1.735868e-01	ci left: 1.721539e-03	ci right 2.052262e-03	k: 508	n:270000
SDK1   270000 perm   108 sec   (2489 perm/sec)   p_kst 1.881481e-03   p_cons 1.481481e-04   p_joint 5.703704e-04

Joint ci ratio: 3.107874e-01	ci left: 4.797481e-04	ci right 6.594233e-04	k: 158	n:280000
Cons ci ratio: 5.977474e-01	ci left: 1.081089e-04	ci right 2.027511e-04	k: 42	n:280000
KS ci ratio: 1.709221e-01	ci left: 1.714735e-03	ci right 2.038572e-03	k: 524	n:280000
SDK1   280000 perm   114 sec   (2467 perm/sec)   p_kst 1.871429e-03   p_cons 1.500000e-04   p_joint 5.642857e-04

Joint ci ratio: 3.157982e-01	ci left: 4.473178e-04	ci right 6.180940e-04	k: 153	n:290000
Cons ci ratio: 5.717434e-01	ci left: 1.161325e-04	ci right 2.115722e-04	k: 46	n:290000
KS ci ratio: 1.665361e-01	ci left: 1.748083e-03	ci right 2.068898e-03	k: 552	n:290000
SDK1   290000 perm   119 sec   (2444 perm/sec)   p_kst 1.903448e-03   p_cons 1.586207e-04   p_joint 5.275862e-04

Joint ci ratio: 3.189243e-01	ci left: 4.232028e-04	ci right 5.866984e-04	k: 150	n:300000
Cons ci ratio: 5.657571e-01	ci left: 1.151150e-04	ci right 2.083281e-04	k: 47	n:300000
KS ci ratio: 1.633183e-01	ci left: 1.760121e-03	ci right 2.076291e-03	k: 574	n:300000
SDK1   300000 perm   124 sec   (2421 perm/sec)   p_kst 1.913333e-03   p_cons 1.566667e-04   p_joint 5.000000e-04

Joint ci ratio: 3.158036e-01	ci left: 4.184575e-04	ci right 5.782187e-04	k: 153	n:310000
Cons ci ratio: 5.488638e-01	ci left: 1.197151e-04	ci right 2.126357e-04	k: 50	n:310000
KS ci ratio: 1.615044e-01	ci left: 1.743573e-03	ci right 2.052954e-03	k: 587	n:310000
SDK1   310000 perm   129 sec   (2395 perm/sec)   p_kst 1.893548e-03   p_cons 1.612903e-04   p_joint 4.935484e-04

Joint ci ratio: 3.158061e-01	ci left: 4.053803e-04	ci right 5.601501e-04	k: 153	n:320000
Cons ci ratio: 5.333986e-01	ci left: 1.240669e-04	ci right 2.166361e-04	k: 53	n:320000
KS ci ratio: 1.594840e-01	ci left: 1.734078e-03	ci right 2.037556e-03	k: 602	n:320000
SDK1   320000 perm   135 sec   (2371 perm/sec)   p_kst 1.881250e-03   p_cons 1.656250e-04   p_joint 4.781250e-04

Joint ci ratio: 3.098276e-01	ci left: 4.098509e-04	ci right 5.627801e-04	k: 159	n:330000
Cons ci ratio: 5.146752e-01	ci left: 1.308245e-04	ci right 2.237825e-04	k: 57	n:330000
KS ci ratio: 1.569029e-01	ci left: 1.739738e-03	ci right 2.038815e-03	k: 622	n:330000
SDK1   330000 perm   141 sec   (2348 perm/sec)   p_kst 1.884848e-03   p_cons 1.727273e-04   p_joint 4.818182e-04

Joint ci ratio: 3.210681e-01	ci left: 3.680025e-04	ci right 5.113248e-04	k: 148	n:340000
Cons ci ratio: 5.102955e-01	ci left: 1.295373e-04	ci right 2.205193e-04	k: 58	n:340000
KS ci ratio: 1.550484e-01	ci left: 1.730964e-03	ci right 2.024689e-03	k: 637	n:340000
SDK1   340000 perm   146 sec   (2325 perm/sec)   p_kst 1.873529e-03   p_cons 1.705882e-04   p_joint 4.352941e-04

Joint ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
Cons ci ratio: 5.060257e-01	ci left: 1.283268e-04	ci right 2.174395e-04	k: 59	n:350000
KS ci ratio: 1.526736e-01	ci left: 1.736451e-03	ci right 2.026181e-03	k: 657	n:350000
SDK1   350000 perm   152 sec   (2302 perm/sec)   p_kst 1.877143e-03   p_cons 1.685714e-04   p_joint 4.400000e-04

Joint ci ratio: 3.117896e-01	ci left: 3.705731e-04	ci right 5.098962e-04	k: 157	n:360000
Cons ci ratio: 4.899558e-01	ci left: 1.344773e-04	ci right 2.238955e-04	k: 63	n:360000
KS ci ratio: 1.510759e-01	ci left: 1.725627e-03	ci right 2.010265e-03	k: 671	n:360000
SDK1   360000 perm   158 sec   (2283 perm/sec)   p_kst 1.863889e-03   p_cons 1.750000e-04   p_joint 4.361111e-04

Joint ci ratio: 3.147956e-01	ci left: 3.530864e-04	ci right 4.873726e-04	k: 154	n:370000
Cons ci ratio: 4.788602e-01	ci left: 1.379604e-04	ci right 2.269355e-04	k: 66	n:370000
KS ci ratio: 1.484472e-01	ci left: 1.741423e-03	ci right 2.023226e-03	k: 695	n:370000
SDK1   370000 perm   164 sec   (2259 perm/sec)   p_kst 1.878378e-03   p_cons 1.783784e-04   p_joint 4.162162e-04

Joint ci ratio: 3.117932e-01	ci left: 3.510687e-04	ci right 4.830605e-04	k: 157	n:380000
Cons ci ratio: 4.753267e-01	ci left: 1.366448e-04	ci right 2.239095e-04	k: 67	n:380000
KS ci ratio: 1.465642e-01	ci left: 1.741217e-03	ci right 2.019099e-03	k: 713	n:380000
SDK1   380000 perm   170 sec   (2238 perm/sec)   p_kst 1.876316e-03   p_cons 1.763158e-04   p_joint 4.131579e-04

Joint ci ratio: 3.098392e-01	ci left: 3.467951e-04	ci right 4.762015e-04	k: 159	n:390000
Cons ci ratio: 4.718702e-01	ci left: 1.353990e-04	ci right 2.210364e-04	k: 68	n:390000
KS ci ratio: 1.445534e-01	ci left: 1.745985e-03	ci right 2.020475e-03	k: 733	n:390000
SDK1   390000 perm   176 sec   (2218 perm/sec)   p_kst 1.879487e-03   p_cons 1.743590e-04   p_joint 4.076923e-04

Joint ci ratio: 3.060374e-01	ci left: 3.473526e-04	ci right 4.750667e-04	k: 163	n:400000
Cons ci ratio: 4.718713e-01	ci left: 1.320140e-04	ci right 2.155106e-04	k: 68	n:400000
KS ci ratio: 1.424341e-01	ci left: 1.755361e-03	ci right 2.026936e-03	k: 755	n:400000
SDK1   400000 perm   182 sec   (2198 perm/sec)   p_kst 1.887500e-03   p_cons 1.700000e-04   p_joint 4.075000e-04

Joint ci ratio: 3.069767e-01	ci left: 3.366288e-04	ci right 4.608542e-04	k: 162	n:410000
Cons ci ratio: 4.718723e-01	ci left: 1.287941e-04	ci right 2.102544e-04	k: 68	n:410000
KS ci ratio: 1.406772e-01	ci left: 1.757248e-03	ci right 2.025480e-03	k: 774	n:410000
SDK1   410000 perm   188 sec   (2178 perm/sec)   p_kst 1.887805e-03   p_cons 1.658537e-04   p_joint 3.951220e-04

Joint ci ratio: 3.032780e-01	ci left: 3.374086e-04	ci right 4.601321e-04	k: 166	n:420000
Cons ci ratio: 4.619363e-01	ci left: 1.320299e-04	ci right 2.132259e-04	k: 71	n:420000
KS ci ratio: 1.388088e-01	ci left: 1.763661e-03	ci right 2.029001e-03	k: 795	n:420000
SDK1   420000 perm   195 sec   (2159 perm/sec)   p_kst 1.892857e-03   p_cons 1.690476e-04   p_joint 3.952381e-04

Joint ci ratio: 3.005905e-01	ci left: 3.360102e-04	ci right 4.569351e-04	k: 169	n:430000
Cons ci ratio: 4.526026e-01	ci left: 1.351324e-04	ci right 2.160423e-04	k: 74	n:430000
KS ci ratio: 1.371813e-01	ci left: 1.765306e-03	ci right 2.027525e-03	k: 814	n:430000
SDK1   430000 perm   201 sec   (2141 perm/sec)   p_kst 1.893023e-03   p_cons 1.720930e-04   p_joint 3.930233e-04

Joint ci ratio: 2.971153e-01	ci left: 3.367830e-04	ci right 4.563207e-04	k: 173	n:440000
Cons ci ratio: 4.496155e-01	ci left: 1.340756e-04	ci right 2.136616e-04	k: 75	n:440000
KS ci ratio: 1.355283e-01	ci left: 1.769090e-03	ci right 2.028449e-03	k: 834	n:440000
SDK1   440000 perm   207 sec   (2122 perm/sec)   p_kst 1.895455e-03   p_cons 1.704545e-04   p_joint 3.931818e-04

Joint ci ratio: 2.954230e-01	ci left: 3.334130e-04	ci right 4.509542e-04	k: 175	n:450000
Cons ci ratio: 4.466867e-01	ci left: 1.330675e-04	ci right 2.113851e-04	k: 76	n:450000
KS ci ratio: 1.348052e-01	ci left: 1.749099e-03	ci right 2.004050e-03	k: 843	n:450000
SDK1   450000 perm   214 sec   (2104 perm/sec)   p_kst 1.873333e-03   p_cons 1.688889e-04   p_joint 3.888889e-04

Joint ci ratio: 3.148086e-01	ci left: 2.840026e-04	ci right 3.920198e-04	k: 154	n:460000
Cons ci ratio: 4.466876e-01	ci left: 1.301747e-04	ci right 2.067899e-04	k: 76	n:460000
KS ci ratio: 1.333130e-01	ci left: 1.750994e-03	ci right 2.003172e-03	k: 862	n:460000
SDK1   460000 perm   221 sec   (2086 perm/sec)   p_kst 1.873913e-03   p_cons 1.652174e-04   p_joint 3.347826e-04

Joint ci ratio: 3.127975e-01	ci left: 2.818802e-04	ci right 3.882684e-04	k: 156	n:470000
Cons ci ratio: 4.466884e-01	ci left: 1.274049e-04	ci right 2.023902e-04	k: 76	n:470000
KS ci ratio: 1.316451e-01	ci left: 1.758997e-03	ci right 2.008910e-03	k: 884	n:470000
SDK1   470000 perm   227 sec   (2070 perm/sec)   p_kst 1.880851e-03   p_cons 1.617021e-04   p_joint 3.319149e-04

Joint ci ratio: 3.608205e-01	ci left: 2.015919e-04	ci right 2.921209e-04	k: 117	n:480000
Cons ci ratio: 4.619413e-01	ci left: 1.155259e-04	ci right 1.865731e-04	k: 71	n:480000
KS ci ratio: 1.303989e-01	ci left: 1.756607e-03	ci right 2.003635e-03	k: 901	n:480000
SDK1   480000 perm   234 sec   (2054 perm/sec)   p_kst 1.877083e-03   p_cons 1.479167e-04   p_joint 2.437500e-04

Joint ci ratio: 3.825114e-01	ci left: 1.734227e-04	ci right 2.571644e-04	k: 104	n:490000
Cons ci ratio: 4.556559e-01	ci left: 1.167780e-04	ci right 1.873159e-04	k: 73	n:490000
KS ci ratio: 1.259994e-01	ci left: 1.847187e-03	ci right 2.097535e-03	k: 965	n:490000
SDK1   490000 perm   240 sec   (2038 perm/sec)   p_kst 1.969388e-03   p_cons 1.489796e-04   p_joint 2.122449e-04

Joint ci ratio: 3.825123e-01	ci left: 1.699541e-04	ci right 2.520213e-04	k: 104	n:500000
Cons ci ratio: 4.526082e-01	ci left: 1.162136e-04	ci right 1.857969e-04	k: 74	n:500000
KS ci ratio: 1.248419e-01	ci left: 1.845114e-03	ci right 2.092714e-03	k: 983	n:500000
SDK1   500000 perm   247 sec   (2021 perm/sec)   p_kst 1.966000e-03   p_cons 1.480000e-04   p_joint 2.080000e-04

Joint ci ratio: 3.862097e-01	ci left: 1.630789e-04	ci right 2.427812e-04	k: 102	n:510000
Cons ci ratio: 4.496209e-01	ci left: 1.156728e-04	ci right 1.843361e-04	k: 75	n:510000
KS ci ratio: 1.237157e-01	ci left: 1.843132e-03	ci right 2.088071e-03	k: 1001	n:510000
SDK1   510000 perm   254 sec   (2006 perm/sec)   p_kst 1.962745e-03   p_cons 1.470588e-04   p_joint 2.000000e-04

Joint ci ratio: 3.825138e-01	ci left: 1.634173e-04	ci right 2.423283e-04	k: 104	n:520000
Cons ci ratio: 4.496215e-01	ci left: 1.134483e-04	ci right 1.807912e-04	k: 75	n:520000
KS ci ratio: 1.224391e-01	ci left: 1.846829e-03	ci right 2.089543e-03	k: 1022	n:520000
SDK1   520000 perm   261 sec   (1991 perm/sec)   p_kst 1.965385e-03   p_cons 1.442308e-04   p_joint 2.000000e-04

Joint ci ratio: 3.789221e-01	ci left: 1.637464e-04	ci right 2.418892e-04	k: 106	n:530000
Cons ci ratio: 4.438195e-01	ci left: 1.146567e-04	ci right 1.815756e-04	k: 77	n:530000
KS ci ratio: 1.213762e-01	ci left: 1.844909e-03	ci right 2.085115e-03	k: 1040	n:530000
SDK1   530000 perm   269 sec   (1973 perm/sec)   p_kst 1.962264e-03   p_cons 1.452830e-04   p_joint 2.000000e-04

Joint ci ratio: 3.771641e-01	ci left: 1.623899e-04	ci right 2.394368e-04	k: 107	n:540000
Cons ci ratio: 4.438201e-01	ci left: 1.125334e-04	ci right 1.782131e-04	k: 77	n:540000
KS ci ratio: 1.208560e-01	ci left: 1.826905e-03	ci right 2.063675e-03	k: 1049	n:540000
SDK1   540000 perm   276 sec   (1957 perm/sec)   p_kst 1.942593e-03   p_cons 1.425926e-04   p_joint 1.981481e-04

Joint ci ratio: 3.789235e-01	ci left: 1.577919e-04	ci right 2.330934e-04	k: 106	n:550000
Cons ci ratio: 4.410024e-01	ci left: 1.121030e-04	ci right 1.769924e-04	k: 78	n:550000
KS ci ratio: 1.196092e-01	ci left: 1.832486e-03	ci right 2.067355e-03	k: 1071	n:550000
SDK1   550000 perm   283 sec   (1942 perm/sec)   p_kst 1.947273e-03   p_cons 1.418182e-04   p_joint 1.927273e-04

Joint ci ratio: 3.771655e-01	ci left: 1.565902e-04	ci right 2.308857e-04	k: 107	n:560000
Cons ci ratio: 4.355237e-01	ci left: 1.132784e-04	ci right 1.777950e-04	k: 80	n:560000
KS ci ratio: 1.185088e-01	ci left: 1.834414e-03	ci right 2.067216e-03	k: 1091	n:560000
SDK1   560000 perm   291 sec   (1927 perm/sec)   p_kst 1.948214e-03   p_cons 1.428571e-04   p_joint 1.910714e-04

Joint ci ratio: 3.754317e-01	ci left: 1.554314e-04	ci right 2.287546e-04	k: 108	n:570000
Cons ci ratio: 4.276752e-01	ci left: 1.159824e-04	ci right 1.805074e-04	k: 83	n:570000
KS ci ratio: 1.174382e-01	ci left: 1.836284e-03	ci right 2.067071e-03	k: 1111	n:570000
SDK1   570000 perm   298 sec   (1912 perm/sec)   p_kst 1.949123e-03   p_cons 1.456140e-04   p_joint 1.894737e-04

Joint ci ratio: 3.737216e-01	ci left: 1.543134e-04	ci right 2.266964e-04	k: 109	n:580000
Cons ci ratio: 4.276757e-01	ci left: 1.139827e-04	ci right 1.773952e-04	k: 83	n:580000
KS ci ratio: 1.163446e-01	ci left: 1.839772e-03	ci right 2.068697e-03	k: 1132	n:580000
SDK1   580000 perm   306 sec   (1897 perm/sec)   p_kst 1.951724e-03   p_cons 1.431034e-04   p_joint 1.879310e-04

Joint ci ratio: 3.720346e-01	ci left: 1.532340e-04	ci right 2.247071e-04	k: 110	n:590000
Cons ci ratio: 4.251527e-01	ci left: 1.135637e-04	ci right 1.762643e-04	k: 84	n:590000
KS ci ratio: 1.152810e-01	ci left: 1.843152e-03	ci right 2.070258e-03	k: 1153	n:590000
SDK1   590000 perm   313 sec   (1883 perm/sec)   p_kst 1.954237e-03   p_cons 1.423729e-04   p_joint 1.864407e-04

Joint ci ratio: 3.979832e-01	ci left: 1.296024e-04	ci right 1.953839e-04	k: 96	n:600000
Cons ci ratio: 4.226738e-01	ci left: 1.131598e-04	ci right 1.751701e-04	k: 85	n:600000
KS ci ratio: 1.139549e-01	ci left: 1.856143e-03	ci right 2.082042e-03	k: 1180	n:600000
SDK1   600000 perm   321 sec   (1869 perm/sec)   p_kst 1.966667e-03   p_cons 1.416667e-04   p_joint 1.600000e-04

Joint ci ratio: 3.959477e-01	ci left: 1.289534e-04	ci right 1.939831e-04	k: 97	n:610000
Cons ci ratio: 4.178429e-01	ci left: 1.142367e-04	ci right 1.759220e-04	k: 87	n:610000
KS ci ratio: 1.131437e-01	ci left: 1.852792e-03	ci right 2.076571e-03	k: 1197	n:610000
SDK1   610000 perm   329 sec   (1855 perm/sec)   p_kst 1.962295e-03   p_cons 1.426230e-04   p_joint 1.590164e-04

Joint ci ratio: 3.900225e-01	ci left: 1.312341e-04	ci right 1.961688e-04	k: 100	n:620000
Cons ci ratio: 4.131740e-01	ci left: 1.152827e-04	ci right 1.766457e-04	k: 89	n:620000
KS ci ratio: 1.124424e-01	ci left: 1.846419e-03	ci right 2.067954e-03	k: 1212	n:620000
SDK1   620000 perm   337 sec   (1842 perm/sec)   p_kst 1.954839e-03   p_cons 1.435484e-04   p_joint 1.612903e-04

Joint ci ratio: 3.900230e-01	ci left: 1.291510e-04	ci right 1.930551e-04	k: 100	n:630000
Cons ci ratio: 4.131744e-01	ci left: 1.134528e-04	ci right 1.738419e-04	k: 89	n:630000
KS ci ratio: 1.115267e-01	ci left: 1.847967e-03	ci right 2.067764e-03	k: 1232	n:630000
SDK1   630000 perm   345 sec   (1828 perm/sec)   p_kst 1.955556e-03   p_cons 1.412698e-04   p_joint 1.587302e-04

Joint ci ratio: 3.825211e-01	ci left: 1.327761e-04	ci right 1.968926e-04	k: 104	n:640000
Cons ci ratio: 4.131749e-01	ci left: 1.116800e-04	ci right 1.711256e-04	k: 89	n:640000
KS ci ratio: 1.106330e-01	ci left: 1.849475e-03	ci right 2.067573e-03	k: 1252	n:640000
SDK1   640000 perm   353 sec   (1815 perm/sec)   p_kst 1.956250e-03   p_cons 1.390625e-04   p_joint 1.625000e-04

Joint ci ratio: 3.807127e-01	ci left: 1.321243e-04	ci right 1.955488e-04	k: 105	n:650000
Cons ci ratio: 4.108986e-01	ci left: 1.113409e-04	ci right 1.701900e-04	k: 90	n:650000
KS ci ratio: 1.100205e-01	ci left: 1.841965e-03	ci right 2.057897e-03	k: 1266	n:650000
SDK1   650000 perm   361 sec   (1802 perm/sec)   p_kst 1.947692e-03   p_cons 1.384615e-04   p_joint 1.615385e-04

Joint ci ratio: 3.789297e-01	ci left: 1.314929e-04	ci right 1.942451e-04	k: 106	n:660000
Cons ci ratio: 4.021543e-01	ci left: 1.150948e-04	ci right 1.742884e-04	k: 94	n:660000
KS ci ratio: 1.095467e-01	ci left: 1.830265e-03	ci right 2.043842e-03	k: 1277	n:660000
SDK1   660000 perm   369 sec   (1788 perm/sec)   p_kst 1.934848e-03   p_cons 1.424242e-04   p_joint 1.606061e-04

Joint ci ratio: 3.737264e-01	ci left: 1.335844e-04	ci right 1.962451e-04	k: 109	n:670000
Cons ci ratio: 3.959505e-01	ci left: 1.174052e-04	ci right 1.766118e-04	k: 97	n:670000
KS ci ratio: 1.089098e-01	ci left: 1.824723e-03	ci right 2.036337e-03	k: 1292	n:670000
SDK1   670000 perm   377 sec   (1775 perm/sec)   p_kst 1.928358e-03   p_cons 1.447761e-04   p_joint 1.626866e-04

Joint ci ratio: 3.737268e-01	ci left: 1.316199e-04	ci right 1.933592e-04	k: 109	n:680000
Cons ci ratio: 3.919709e-01	ci left: 1.183285e-04	ci right 1.772456e-04	k: 99	n:680000
KS ci ratio: 1.083669e-01	ci left: 1.816487e-03	ci right 2.026028e-03	k: 1305	n:680000
SDK1   680000 perm   386 sec   (1763 perm/sec)   p_kst 1.919118e-03   p_cons 1.455882e-04   p_joint 1.602941e-04

Joint ci ratio: 3.737273e-01	ci left: 1.297124e-04	ci right 1.905570e-04	k: 109	n:690000
Cons ci ratio: 3.919713e-01	ci left: 1.166135e-04	ci right 1.746769e-04	k: 99	n:690000
KS ci ratio: 1.076279e-01	ci left: 1.815543e-03	ci right 2.023457e-03	k: 1323	n:690000
SDK1   690000 perm   394 sec   (1751 perm/sec)   p_kst 1.917391e-03   p_cons 1.434783e-04   p_joint 1.579710e-04

Joint ci ratio: 3.737277e-01	ci left: 1.278593e-04	ci right 1.878348e-04	k: 109	n:700000
Cons ci ratio: 3.900262e-01	ci left: 1.162357e-04	ci right 1.737499e-04	k: 100	n:700000
KS ci ratio: 1.069037e-01	ci left: 1.814631e-03	ci right 2.020954e-03	k: 1341	n:700000
SDK1   700000 perm   403 sec   (1739 perm/sec)   p_kst 1.915714e-03   p_cons 1.428571e-04   p_joint 1.557143e-04

Joint ci ratio: 3.703757e-01	ci left: 1.286120e-04	ci right 1.882683e-04	k: 111	n:710000
Cons ci ratio: 3.881097e-01	ci left: 1.158693e-04	ci right 1.728483e-04	k: 101	n:710000
KS ci ratio: 1.057277e-01	ci left: 1.830204e-03	ci right 2.035866e-03	k: 1371	n:710000
SDK1   710000 perm   411 sec   (1727 perm/sec)   p_kst 1.930986e-03   p_cons 1.422535e-04   p_joint 1.563380e-04

Joint ci ratio: 3.687334e-01	ci left: 1.280856e-04	ci right 1.871708e-04	k: 112	n:720000
Cons ci ratio: 3.881101e-01	ci left: 1.142600e-04	ci right 1.704476e-04	k: 101	n:720000
KS ci ratio: 1.051168e-01	ci left: 1.826421e-03	ci right 2.030398e-03	k: 1387	n:720000
SDK1   720000 perm   420 sec   (1715 perm/sec)   p_kst 1.926389e-03   p_cons 1.402778e-04   p_joint 1.555556e-04

Joint ci ratio: 3.900273e-01	ci left: 1.114589e-04	ci right 1.666096e-04	k: 100	n:730000
Cons ci ratio: 3.881105e-01	ci left: 1.126947e-04	ci right 1.681128e-04	k: 101	n:730000
KS ci ratio: 1.045536e-01	ci left: 1.821410e-03	ci right 2.023671e-03	k: 1402	n:730000
SDK1   730000 perm   429 sec   (1703 perm/sec)   p_kst 1.920548e-03   p_cons 1.383562e-04   p_joint 1.369863e-04

Joint ci ratio: 3.881108e-01	ci left: 1.111718e-04	ci right 1.658410e-04	k: 101	n:740000
Cons ci ratio: 3.862219e-01	ci left: 1.123916e-04	ci right 1.673233e-04	k: 102	n:740000
KS ci ratio: 1.037797e-01	ci left: 1.824436e-03	ci right 2.025441e-03	k: 1423	n:740000
SDK1   740000 perm   437 sec   (1692 perm/sec)   p_kst 1.922973e-03   p_cons 1.378378e-04   p_joint 1.364865e-04

Joint ci ratio: 3.862223e-01	ci left: 1.108931e-04	ci right 1.650923e-04	k: 102	n:750000
Cons ci ratio: 3.825258e-01	ci left: 1.133021e-04	ci right 1.680154e-04	k: 104	n:750000
KS ci ratio: 1.029514e-01	ci left: 1.829984e-03	ci right 2.029894e-03	k: 1446	n:750000
SDK1   750000 perm   446 sec   (1681 perm/sec)   p_kst 1.928000e-03   p_cons 1.386667e-04   p_joint 1.360000e-04

Joint ci ratio: 3.843611e-01	ci left: 1.106223e-04	ci right 1.643627e-04	k: 103	n:760000
Cons ci ratio: 3.825261e-01	ci left: 1.118112e-04	ci right 1.658047e-04	k: 104	n:760000
KS ci ratio: 1.023521e-01	ci left: 1.827699e-03	ci right 2.026128e-03	k: 1463	n:760000
SDK1   760000 perm   455 sec   (1670 perm/sec)   p_kst 1.925000e-03   p_cons 1.368421e-04   p_joint 1.355263e-04

Joint ci ratio: 3.843614e-01	ci left: 1.091856e-04	ci right 1.622282e-04	k: 103	n:770000
Cons ci ratio: 3.807176e-01	ci left: 1.115333e-04	ci right 1.650741e-04	k: 105	n:770000
KS ci ratio: 1.019010e-01	ci left: 1.820414e-03	ci right 2.017129e-03	k: 1476	n:770000
SDK1   770000 perm   464 sec   (1658 perm/sec)   p_kst 1.916883e-03   p_cons 1.363636e-04   p_joint 1.337662e-04

Joint ci ratio: 3.900291e-01	ci left: 1.043140e-04	ci right 1.559296e-04	k: 100	n:780000
Cons ci ratio: 3.771758e-01	ci left: 1.124232e-04	ci right 1.657650e-04	k: 107	n:780000
KS ci ratio: 1.012858e-01	ci left: 1.819566e-03	ci right 2.014932e-03	k: 1494	n:780000
SDK1   780000 perm   473 sec   (1648 perm/sec)   p_kst 1.915385e-03   p_cons 1.371795e-04   p_joint 1.282051e-04

Joint ci ratio: 3.881125e-01	ci left: 1.041355e-04	ci right 1.553449e-04	k: 101	n:790000
Cons ci ratio: 3.754418e-01	ci left: 1.121462e-04	ci right 1.650517e-04	k: 108	n:790000
KS ci ratio: 1.007483e-01	ci left: 1.816275e-03	ci right 2.010191e-03	k: 1510	n:790000
SDK1   790000 perm   483 sec   (1637 perm/sec)   p_kst 1.911392e-03   p_cons 1.367089e-04   p_joint 1.278481e-04

Joint ci ratio: 3.900297e-01	ci left: 1.017061e-04	ci right 1.520314e-04	k: 100	n:800000
Cons ci ratio: 3.754421e-01	ci left: 1.107444e-04	ci right 1.629886e-04	k: 108	n:800000
KS ci ratio: 1.000553e-01	ci left: 1.819163e-03	ci right 2.011973e-03	k: 1531	n:800000
SDK1   800000 perm   492 sec   (1626 perm/sec)   p_kst 1.913750e-03   p_cons 1.350000e-04   p_joint 1.250000e-04

Joint ci ratio: 3.881132e-01	ci left: 1.015643e-04	ci right 1.515093e-04	k: 101	n:810000
Cons ci ratio: 3.720442e-01	ci left: 1.116144e-04	ci right 1.636764e-04	k: 110	n:810000
KS ci ratio: 9.953709e-02	ci left: 1.815964e-03	ci right 2.007380e-03	k: 1547	n:810000
SDK1   810000 perm   501 sec   (1615 perm/sec)   p_kst 1.909877e-03   p_cons 1.358025e-04   p_joint 1.246914e-04

Joint ci ratio: 3.959559e-01	ci left: 9.592841e-05	ci right 1.443052e-04	k: 97	n:820000
Cons ci ratio: 3.703797e-01	ci left: 1.113590e-04	ci right 1.630132e-04	k: 111	n:820000
KS ci ratio: 9.880554e-02	ci left: 1.821171e-03	ci right 2.011643e-03	k: 1570	n:820000
SDK1   820000 perm   511 sec   (1604 perm/sec)   p_kst 1.914634e-03   p_cons 1.353659e-04   p_joint 1.182927e-04

Joint ci ratio: 3.919761e-01	ci left: 9.694357e-05	ci right 1.452137e-04	k: 99	n:830000
Cons ci ratio: 3.703800e-01	ci left: 1.100173e-04	ci right 1.610492e-04	k: 111	n:830000
KS ci ratio: 9.827537e-02	ci left: 1.819206e-03	ci right 2.008393e-03	k: 1587	n:830000
SDK1   830000 perm   521 sec   (1594 perm/sec)   p_kst 1.912048e-03   p_cons 1.337349e-04   p_joint 1.192771e-04

Joint ci ratio: 3.881140e-01	ci left: 9.793694e-05	ci right 1.460983e-04	k: 101	n:840000
Cons ci ratio: 3.703803e-01	ci left: 1.087076e-04	ci right 1.591319e-04	k: 111	n:840000
KS ci ratio: 9.772315e-02	ci left: 1.818452e-03	ci right 2.006437e-03	k: 1605	n:840000
SDK1   840000 perm   530 sec   (1584 perm/sec)   p_kst 1.910714e-03   p_cons 1.321429e-04   p_joint 1.202381e-04

Joint ci ratio: 3.862254e-01	ci left: 9.784669e-05	ci right 1.456699e-04	k: 102	n:850000
Cons ci ratio: 3.687379e-01	ci left: 1.084958e-04	ci right 1.585451e-04	k: 112	n:850000
KS ci ratio: 9.715018e-02	ci left: 1.818867e-03	ci right 2.005730e-03	k: 1624	n:850000
SDK1   850000 perm   540 sec   (1575 perm/sec)   p_kst 1.910588e-03   p_cons 1.317647e-04   p_joint 1.200000e-04

Joint ci ratio: 3.862257e-01	ci left: 9.670892e-05	ci right 1.439761e-04	k: 102	n:860000
Cons ci ratio: 3.655172e-01	ci left: 1.093453e-04	ci right 1.592407e-04	k: 114	n:860000
KS ci ratio: 9.661661e-02	ci left: 1.818141e-03	ci right 2.003845e-03	k: 1642	n:860000
SDK1   860000 perm   549 sec   (1566 perm/sec)   p_kst 1.909302e-03   p_cons 1.325581e-04   p_joint 1.186047e-04

Joint ci ratio: 3.843644e-01	ci left: 9.663541e-05	ci right 1.435815e-04	k: 103	n:870000
Cons ci ratio: 3.623796e-01	ci left: 1.101771e-04	ci right 1.599185e-04	k: 116	n:870000
KS ci ratio: 9.591832e-02	ci left: 1.824165e-03	ci right 2.009062e-03	k: 1666	n:870000
SDK1   870000 perm   559 sec   (1557 perm/sec)   p_kst 1.914943e-03   p_cons 1.333333e-04   p_joint 1.183908e-04

Joint ci ratio: 3.825298e-01	ci left: 9.656410e-05	ci right 1.431953e-04	k: 104	n:880000
Cons ci ratio: 3.623798e-01	ci left: 1.089251e-04	ci right 1.581013e-04	k: 116	n:880000
KS ci ratio: 9.534800e-02	ci left: 1.825619e-03	ci right 2.009502e-03	k: 1686	n:880000
SDK1   880000 perm   569 sec   (1547 perm/sec)   p_kst 1.915909e-03   p_cons 1.318182e-04   p_joint 1.181818e-04

Joint ci ratio: 3.843649e-01	ci left: 9.446380e-05	ci right 1.403550e-04	k: 103	n:890000
Cons ci ratio: 3.623801e-01	ci left: 1.077012e-04	ci right 1.563249e-04	k: 116	n:890000
KS ci ratio: 9.478774e-02	ci left: 1.827045e-03	ci right 2.009929e-03	k: 1706	n:890000
SDK1   890000 perm   579 sec   (1538 perm/sec)   p_kst 1.916854e-03   p_cons 1.303371e-04   p_joint 1.157303e-04

Joint ci ratio: 3.843652e-01	ci left: 9.341420e-05	ci right 1.387955e-04	k: 103	n:900000
Cons ci ratio: 3.608414e-01	ci left: 1.075147e-04	ci right 1.557996e-04	k: 117	n:900000
KS ci ratio: 9.442918e-02	ci left: 1.820846e-03	ci right 2.002383e-03	k: 1719	n:900000
SDK1   900000 perm   589 sec   (1529 perm/sec)   p_kst 1.910000e-03   p_cons 1.300000e-04   p_joint 1.144444e-04

Joint ci ratio: 3.807217e-01	ci left: 9.437412e-05	ci right 1.396784e-04	k: 105	n:910000
Cons ci ratio: 3.593221e-01	ci left: 1.073327e-04	ci right 1.552854e-04	k: 118	n:910000
KS ci ratio: 9.372311e-02	ci left: 1.828737e-03	ci right 2.009622e-03	k: 1745	n:910000
SDK1   910000 perm   599 sec   (1520 perm/sec)   p_kst 1.917582e-03   p_cons 1.296703e-04   p_joint 1.153846e-04

Joint ci ratio: 3.789385e-01	ci left: 9.433149e-05	ci right 1.393504e-04	k: 106	n:920000
Cons ci ratio: 3.563400e-01	ci left: 1.081445e-04	ci right 1.559660e-04	k: 120	n:920000
KS ci ratio: 9.332330e-02	ci left: 1.824782e-03	ci right 2.004464e-03	k: 1760	n:920000
SDK1   920000 perm   609 sec   (1511 perm/sec)   p_kst 1.913043e-03   p_cons 1.304348e-04   p_joint 1.152174e-04

Joint ci ratio: 3.771801e-01	ci left: 9.429026e-05	ci right 1.390290e-04	k: 107	n:930000
Cons ci ratio: 3.548767e-01	ci left: 1.079609e-04	ci right 1.554599e-04	k: 121	n:930000
KS ci ratio: 9.308625e-02	ci left: 1.814612e-03	ci right 1.992814e-03	k: 1769	n:930000
SDK1   930000 perm   619 sec   (1502 perm/sec)   p_kst 1.902151e-03   p_cons 1.301075e-04   p_joint 1.150538e-04

Joint ci ratio: 3.754459e-01	ci left: 9.425038e-05	ci right 1.387140e-04	k: 108	n:940000
Cons ci ratio: 3.520030e-01	ci left: 1.087512e-04	ci right 1.561219e-04	k: 123	n:940000
KS ci ratio: 9.253881e-02	ci left: 1.817130e-03	ci right 1.994473e-03	k: 1790	n:940000
SDK1   940000 perm   629 sec   (1494 perm/sec)   p_kst 1.904255e-03   p_cons 1.308511e-04   p_joint 1.148936e-04

Joint ci ratio: 3.720480e-01	ci left: 9.516580e-05	ci right 1.395560e-04	k: 110	n:950000
Cons ci ratio: 3.464588e-01	ci left: 1.114477e-04	ci right 1.590568e-04	k: 127	n:950000
KS ci ratio: 9.202636e-02	ci left: 1.818569e-03	ci right 1.995017e-03	k: 1810	n:950000
SDK1   950000 perm   639 sec   (1486 perm/sec)   p_kst 1.905263e-03   p_cons 1.336842e-04   p_joint 1.157895e-04

Joint ci ratio: 3.720482e-01	ci left: 9.417448e-05	ci right 1.381023e-04	k: 110	n:960000
Cons ci ratio: 3.464590e-01	ci left: 1.102868e-04	ci right 1.574000e-04	k: 127	n:960000
KS ci ratio: 9.162266e-02	ci left: 1.815909e-03	ci right 1.991285e-03	k: 1826	n:960000
SDK1   960000 perm   650 sec   (1477 perm/sec)   p_kst 1.902083e-03   p_cons 1.322917e-04   p_joint 1.145833e-04

Joint ci ratio: 3.703836e-01	ci left: 9.413836e-05	ci right 1.378052e-04	k: 111	n:970000
Cons ci ratio: 3.451136e-01	ci left: 1.100912e-04	ci right 1.568974e-04	k: 128	n:970000
KS ci ratio: 9.112521e-02	ci left: 1.817336e-03	ci right 1.991845e-03	k: 1846	n:970000
SDK1   970000 perm   661 sec   (1468 perm/sec)   p_kst 1.903093e-03   p_cons 1.319588e-04   p_joint 1.144330e-04

Joint ci ratio: 3.671201e-01	ci left: 9.502948e-05	ci right 1.386281e-04	k: 113	n:980000
Cons ci ratio: 3.411691e-01	ci left: 1.117653e-04	ci right 1.586204e-04	k: 131	n:980000
KS ci ratio: 9.073320e-02	ci left: 1.814747e-03	ci right 1.988218e-03	k: 1862	n:980000
SDK1   980000 perm   672 sec   (1459 perm/sec)   p_kst 1.900000e-03   p_cons 1.336735e-04   p_joint 1.153061e-04

Joint ci ratio: 3.639414e-01	ci left: 9.590425e-05	ci right 1.394328e-04	k: 115	n:990000
Cons ci ratio: 3.386133e-01	ci left: 1.124841e-04	ci right 1.592102e-04	k: 133	n:990000
KS ci ratio: 9.013020e-02	ci left: 1.821098e-03	ci right 1.993958e-03	k: 1887	n:990000
SDK1   990000 perm   682 sec   (1451 perm/sec)   p_kst 1.906061e-03   p_cons 1.343434e-04   p_joint 1.161616e-04

Joint ci ratio: 3.639416e-01	ci left: 9.494520e-05	ci right 1.380385e-04	k: 115	n:1000000
Cons ci ratio: 3.373569e-01	ci left: 1.122744e-04	ci right 1.587026e-04	k: 134	n:1000000
KS ci ratio: 8.979811e-02	ci left: 1.816572e-03	ci right 1.988334e-03	k: 1901	n:1000000
SDK1   1000000 perm   693 sec   (1443 perm/sec)   p_kst 1.901000e-03   p_cons 1.340000e-04   p_joint 1.150000e-04

Joint ci ratio: 3.608440e-01	ci left: 9.580506e-05	ci right 1.388315e-04	k: 117	n:1010000
Cons ci ratio: 3.361144e-01	ci left: 1.120692e-04	ci right 1.582048e-04	k: 135	n:1010000
KS ci ratio: 8.928310e-02	ci left: 1.819880e-03	ci right 1.990917e-03	k: 1923	n:1010000
SDK1   1010000 perm   704 sec   (1435 perm/sec)   p_kst 1.903960e-03   p_cons 1.336634e-04   p_joint 1.158416e-04

Joint ci ratio: 3.593247e-01	ci left: 9.575749e-05	ci right 1.385391e-04	k: 118	n:1020000
Cons ci ratio: 3.336698e-01	ci left: 1.127664e-04	ci right 1.587788e-04	k: 137	n:1020000
KS ci ratio: 8.889134e-02	ci left: 1.818334e-03	ci right 1.988436e-03	k: 1940	n:1020000
SDK1   1020000 perm   715 sec   (1427 perm/sec)   p_kst 1.901961e-03   p_cons 1.343137e-04   p_joint 1.156863e-04

Joint ci ratio: 3.578244e-01	ci left: 9.571123e-05	ci right 1.382521e-04	k: 119	n:1030000
Cons ci ratio: 3.301008e-01	ci left: 1.143415e-04	ci right 1.603917e-04	k: 140	n:1030000
KS ci ratio: 8.845945e-02	ci left: 1.818717e-03	ci right 1.987987e-03	k: 1959	n:1030000
SDK1   1030000 perm   726 sec   (1419 perm/sec)   p_kst 1.901942e-03   p_cons 1.359223e-04   p_joint 1.155340e-04

Joint ci ratio: 3.548791e-01	ci left: 9.654186e-05	ci right 1.390172e-04	k: 121	n:1040000
Cons ci ratio: 3.277842e-01	ci left: 1.150064e-04	ci right 1.609308e-04	k: 142	n:1040000
KS ci ratio: 8.819019e-02	ci left: 1.812513e-03	ci right 1.980665e-03	k: 1971	n:1040000
SDK1   1040000 perm   737 sec   (1412 perm/sec)   p_kst 1.895192e-03   p_cons 1.365385e-04   p_joint 1.163462e-04

Joint ci ratio: 3.623838e-01	ci left: 9.128945e-05	ci right 1.325042e-04	k: 116	n:1050000
Cons ci ratio: 3.266441e-01	ci left: 1.147852e-04	ci right 1.604285e-04	k: 143	n:1050000
KS ci ratio: 8.783471e-02	ci left: 1.810154e-03	ci right 1.977375e-03	k: 1987	n:1050000
SDK1   1050000 perm   748 sec   (1404 perm/sec)   p_kst 1.892381e-03   p_cons 1.361905e-04   p_joint 1.104762e-04

Joint ci ratio: 4.382526e-01	ci left: 5.900519e-05	ci right 9.288365e-05	k: 79	n:1060000
Cons ci ratio: 3.255159e-01	ci left: 1.145685e-04	ci right 1.599354e-04	k: 144	n:1060000
KS ci ratio: 8.739614e-02	ci left: 1.811531e-03	ci right 1.978002e-03	k: 2007	n:1060000
SDK1   1060000 perm   759 sec   (1396 perm/sec)   p_kst 1.893396e-03   p_cons 1.358491e-04   p_joint 7.452830e-05

Joint ci ratio: 4.382527e-01	ci left: 5.845373e-05	ci right 9.201558e-05	k: 79	n:1070000
Cons ci ratio: 3.243992e-01	ci left: 1.143562e-04	ci right 1.594512e-04	k: 145	n:1070000
KS ci ratio: 8.705014e-02	ci left: 1.809228e-03	ci right 1.974795e-03	k: 2023	n:1070000
SDK1   1070000 perm   770 sec   (1389 perm/sec)   p_kst 1.890654e-03   p_cons 1.355140e-04   p_joint 7.383178e-05

Joint ci ratio: 4.382529e-01	ci left: 5.791249e-05	ci right 9.116360e-05	k: 79	n:1080000
Cons ci ratio: 3.232940e-01	ci left: 1.141480e-04	ci right 1.589757e-04	k: 146	n:1080000
KS ci ratio: 8.681487e-02	ci left: 1.802440e-03	ci right 1.966917e-03	k: 2034	n:1080000
SDK1   1080000 perm   782 sec   (1382 perm/sec)   p_kst 1.883333e-03   p_cons 1.351852e-04   p_joint 7.314815e-05

Joint ci ratio: 4.496390e-01	ci left: 5.412171e-05	ci right 8.624984e-05	k: 75	n:1090000
Cons ci ratio: 3.222000e-01	ci left: 1.139438e-04	ci right 1.585087e-04	k: 147	n:1090000
KS ci ratio: 8.639133e-02	ci left: 1.803855e-03	ci right 1.967618e-03	k: 2054	n:1090000
SDK1   1090000 perm   793 sec   (1375 perm/sec)   p_kst 1.884404e-03   p_cons 1.348624e-04   p_joint 6.880734e-05

Joint ci ratio: 4.496391e-01	ci left: 5.362969e-05	ci right 8.546576e-05	k: 75	n:1100000
Cons ci ratio: 3.222002e-01	ci left: 1.129080e-04	ci right 1.570678e-04	k: 147	n:1100000
KS ci ratio: 8.582901e-02	ci left: 1.811473e-03	ci right 1.974804e-03	k: 2081	n:1100000
SDK1   1100000 perm   804 sec   (1368 perm/sec)   p_kst 1.891818e-03   p_cons 1.336364e-04   p_joint 6.818182e-05

Joint ci ratio: 4.587860e-01	ci left: 5.075310e-05	ci right 8.168588e-05	k: 72	n:1110000
Cons ci ratio: 3.179321e-01	ci left: 1.152050e-04	ci right 1.595448e-04	k: 151	n:1110000
KS ci ratio: 8.541968e-02	ci left: 1.812786e-03	ci right 1.975416e-03	k: 2101	n:1110000
SDK1   1110000 perm   815 sec   (1361 perm/sec)   p_kst 1.892793e-03   p_cons 1.360360e-04   p_joint 6.486486e-05

Joint ci ratio: 4.587861e-01	ci left: 5.029994e-05	ci right 8.095654e-05	k: 72	n:1120000
Cons ci ratio: 3.168914e-01	ci left: 1.149981e-04	ci right 1.590841e-04	k: 152	n:1120000
KS ci ratio: 8.497603e-02	ci left: 1.815825e-03	ci right 1.977840e-03	k: 2123	n:1120000
SDK1   1120000 perm   827 sec   (1354 perm/sec)   p_kst 1.895536e-03   p_cons 1.357143e-04   p_joint 6.428571e-05

Joint ci ratio: 4.587863e-01	ci left: 4.985481e-05	ci right 8.024012e-05	k: 72	n:1130000
Cons ci ratio: 3.148402e-01	ci left: 1.156100e-04	ci right 1.595860e-04	k: 154	n:1130000
KS ci ratio: 8.455896e-02	ci left: 1.817946e-03	ci right 1.979315e-03	k: 2144	n:1130000
SDK1   1130000 perm   839 sec   (1347 perm/sec)   p_kst 1.897345e-03   p_cons 1.362832e-04   p_joint 6.371681e-05

Joint ci ratio: 4.587864e-01	ci left: 4.941748e-05	ci right 7.953626e-05	k: 72	n:1140000
Cons ci ratio: 3.138296e-01	ci left: 1.154039e-04	ci right 1.591323e-04	k: 155	n:1140000
KS ci ratio: 8.426499e-02	ci left: 1.814879e-03	ci right 1.975388e-03	k: 2159	n:1140000
SDK1   1140000 perm   851 sec   (1340 perm/sec)   p_kst 1.893860e-03   p_cons 1.359649e-04   p_joint 6.315789e-05

Joint ci ratio: 4.619618e-01	ci left: 4.821908e-05	ci right 7.787488e-05	k: 71	n:1150000
Cons ci ratio: 3.118369e-01	ci left: 1.160030e-04	ci right 1.596237e-04	k: 157	n:1150000
KS ci ratio: 8.395473e-02	ci left: 1.812718e-03	ci right 1.972416e-03	k: 2175	n:1150000
SDK1   1150000 perm   863 sec   (1333 perm/sec)   p_kst 1.891304e-03   p_cons 1.365217e-04   p_joint 6.173913e-05

Joint ci ratio: 4.619619e-01	ci left: 4.780339e-05	ci right 7.720355e-05	k: 71	n:1160000
Cons ci ratio: 3.108548e-01	ci left: 1.157977e-04	ci right 1.591769e-04	k: 158	n:1160000
KS ci ratio: 8.366699e-02	ci left: 1.809751e-03	ci right 1.968615e-03	k: 2190	n:1160000
SDK1   1160000 perm   875 sec   (1326 perm/sec)   p_kst 1.887931e-03   p_cons 1.362069e-04   p_joint 6.120690e-05

Joint ci ratio: 4.619620e-01	ci left: 4.739482e-05	ci right 7.654370e-05	k: 71	n:1170000
Cons ci ratio: 3.098819e-01	ci left: 1.155961e-04	ci right 1.587375e-04	k: 159	n:1170000
KS ci ratio: 8.338219e-02	ci left: 1.806835e-03	ci right 1.964878e-03	k: 2205	n:1170000
SDK1   1170000 perm   887 sec   (1319 perm/sec)   p_kst 1.884615e-03   p_cons 1.358974e-04   p_joint 6.068376e-05

Joint ci ratio: 4.619621e-01	ci left: 4.699316e-05	ci right 7.589503e-05	k: 71	n:1180000
Cons ci ratio: 3.089181e-01	ci left: 1.153982e-04	ci right 1.583053e-04	k: 160	n:1180000
KS ci ratio: 8.295074e-02	ci left: 1.810609e-03	ci right 1.968123e-03	k: 2228	n:1180000
SDK1   1180000 perm   899 sec   (1312 perm/sec)   p_kst 1.888136e-03   p_cons 1.355932e-04   p_joint 6.016949e-05

Joint ci ratio: 4.619623e-01	ci left: 4.659826e-05	ci right 7.525726e-05	k: 71	n:1190000
Cons ci ratio: 3.070169e-01	ci left: 1.159792e-04	ci right 1.587851e-04	k: 162	n:1190000
KS ci ratio: 8.263628e-02	ci left: 1.809384e-03	ci right 1.966165e-03	k: 2245	n:1190000
SDK1   1190000 perm   912 sec   (1305 perm/sec)   p_kst 1.886555e-03   p_cons 1.361345e-04   p_joint 5.966387e-05

Joint ci ratio: 4.619624e-01	ci left: 4.620994e-05	ci right 7.463012e-05	k: 71	n:1200000
Cons ci ratio: 3.060795e-01	ci left: 1.157820e-04	ci right 1.583591e-04	k: 163	n:1200000
KS ci ratio: 8.225258e-02	ci left: 1.811445e-03	ci right 1.967641e-03	k: 2266	n:1200000
SDK1   1200000 perm   924 sec   (1298 perm/sec)   p_kst 1.888333e-03   p_cons 1.358333e-04   p_joint 5.916667e-05

Joint ci ratio: 4.862029e-01	ci left: 4.073395e-05	ci right 6.754213e-05	k: 64	n:1210000
Cons ci ratio: 3.024134e-01	ci left: 1.178786e-04	ci right 1.606077e-04	k: 167	n:1210000
KS ci ratio: 8.191004e-02	ci left: 1.811855e-03	ci right 1.967404e-03	k: 2285	n:1210000
SDK1   1210000 perm   937 sec   (1291 perm/sec)   p_kst 1.888430e-03   p_cons 1.380165e-04   p_joint 5.289256e-05

Joint ci ratio: 5.147088e-01	ci left: 3.538645e-05	ci right 6.053246e-05	k: 57	n:1220000
Cons ci ratio: 3.015175e-01	ci left: 1.176700e-04	ci right 1.601728e-04	k: 168	n:1220000
KS ci ratio: 8.148325e-02	ci left: 1.816274e-03	ci right 1.971352e-03	k: 2309	n:1220000
SDK1   1220000 perm   950 sec   (1285 perm/sec)   p_kst 1.892623e-03   p_cons 1.377049e-04   p_joint 4.672131e-05

Joint ci ratio: 5.147089e-01	ci left: 3.509875e-05	ci right 6.004033e-05	k: 57	n:1230000
Cons ci ratio: 2.988762e-01	ci left: 1.189687e-04	ci right 1.614928e-04	k: 171	n:1230000
KS ci ratio: 8.122011e-02	ci left: 1.813454e-03	ci right 1.967768e-03	k: 2324	n:1230000
SDK1   1230000 perm   962 sec   (1278 perm/sec)   p_kst 1.889431e-03   p_cons 1.390244e-04   p_joint 4.634146e-05

Joint ci ratio: 5.147090e-01	ci left: 3.481570e-05	ci right 5.955614e-05	k: 57	n:1240000
Cons ci ratio: 2.980112e-01	ci left: 1.187553e-04	ci right 1.610571e-04	k: 172	n:1240000
KS ci ratio: 8.076952e-02	ci left: 1.819373e-03	ci right 1.973291e-03	k: 2350	n:1240000
SDK1   1240000 perm   975 sec   (1272 perm/sec)   p_kst 1.895161e-03   p_cons 1.387097e-04   p_joint 4.596774e-05

Joint ci ratio: 5.147091e-01	ci left: 3.453717e-05	ci right 5.907969e-05	k: 57	n:1250000
Cons ci ratio: 2.971536e-01	ci left: 1.185455e-04	ci right 1.606282e-04	k: 173	n:1250000
KS ci ratio: 8.037718e-02	ci left: 1.822847e-03	ci right 1.976275e-03	k: 2373	n:1250000
SDK1   1250000 perm   988 sec   (1265 perm/sec)   p_kst 1.898400e-03   p_cons 1.384000e-04   p_joint 4.560000e-05

Joint ci ratio: 5.103284e-01	ci left: 3.495401e-05	ci right 5.950631e-05	k: 58	n:1260000
Cons ci ratio: 2.971538e-01	ci left: 1.176047e-04	ci right 1.593534e-04	k: 173	n:1260000
KS ci ratio: 8.012457e-02	ci left: 1.820046e-03	ci right 1.972734e-03	k: 2388	n:1260000
SDK1   1260000 perm   1001 sec   (1259 perm/sec)   p_kst 1.895238e-03   p_cons 1.373016e-04   p_joint 4.603175e-05

Joint ci ratio: 5.103285e-01	ci left: 3.467878e-05	ci right 5.903775e-05	k: 58	n:1270000
Cons ci ratio: 2.963036e-01	ci left: 1.174075e-04	ci right 1.589444e-04	k: 174	n:1270000
KS ci ratio: 7.979124e-02	ci left: 1.821148e-03	ci right 1.973264e-03	k: 2408	n:1270000
SDK1   1270000 perm   1014 sec   (1253 perm/sec)   p_kst 1.896063e-03   p_cons 1.370079e-04   p_joint 4.566929e-05

Joint ci ratio: 5.103286e-01	ci left: 3.440786e-05	ci right 5.857653e-05	k: 58	n:1280000
Cons ci ratio: 2.963038e-01	ci left: 1.164902e-04	ci right 1.577027e-04	k: 174	n:1280000
KS ci ratio: 7.952767e-02	ci left: 1.819172e-03	ci right 1.970597e-03	k: 2424	n:1280000
SDK1   1280000 perm   1027 sec   (1247 perm/sec)   p_kst 1.893750e-03   p_cons 1.359375e-04   p_joint 4.531250e-05

Joint ci ratio: 5.103287e-01	ci left: 3.414113e-05	ci right 5.812245e-05	k: 58	n:1290000
Cons ci ratio: 2.963039e-01	ci left: 1.155872e-04	ci right 1.564802e-04	k: 174	n:1290000
KS ci ratio: 7.918548e-02	ci left: 1.821025e-03	ci right 1.971923e-03	k: 2445	n:1290000
SDK1   1290000 perm   1040 sec   (1240 perm/sec)   p_kst 1.895349e-03   p_cons 1.348837e-04   p_joint 4.496124e-05

Joint ci ratio: 5.060580e-01	ci left: 3.454905e-05	ci right 5.854246e-05	k: 59	n:1300000
Cons ci ratio: 2.946251e-01	ci left: 1.161225e-04	ci right 1.569287e-04	k: 176	n:1300000
KS ci ratio: 7.887971e-02	ci left: 1.821344e-03	ci right 1.971658e-03	k: 2464	n:1300000
SDK1   1300000 perm   1053 sec   (1235 perm/sec)   p_kst 1.895385e-03   p_cons 1.353846e-04   p_joint 4.538462e-05

Joint ci ratio: 5.018927e-01	ci left: 3.495157e-05	ci right 5.895526e-05	k: 60	n:1310000
Cons ci ratio: 2.937963e-01	ci left: 1.159431e-04	ci right 1.565503e-04	k: 177	n:1310000
KS ci ratio: 7.843522e-02	ci left: 1.828395e-03	ci right 1.978401e-03	k: 2492	n:1310000
SDK1   1310000 perm   1066 sec   (1229 perm/sec)   p_kst 1.902290e-03   p_cons 1.351145e-04   p_joint 4.580153e-05

Joint ci ratio: 5.018928e-01	ci left: 3.468678e-05	ci right 5.850863e-05	k: 60	n:1320000
Cons ci ratio: 2.921595e-01	ci left: 1.164686e-04	ci right 1.569905e-04	k: 179	n:1320000
KS ci ratio: 7.816921e-02	ci left: 1.827170e-03	ci right 1.976544e-03	k: 2509	n:1320000
SDK1   1320000 perm   1080 sec   (1223 perm/sec)   p_kst 1.900758e-03   p_cons 1.356061e-04   p_joint 4.545455e-05

Joint ci ratio: 5.018929e-01	ci left: 3.442598e-05	ci right 5.806872e-05	k: 60	n:1330000
Cons ci ratio: 2.913514e-01	ci left: 1.162897e-04	ci right 1.566169e-04	k: 180	n:1330000
KS ci ratio: 7.790589e-02	ci left: 1.825964e-03	ci right 1.974715e-03	k: 2526	n:1330000
SDK1   1330000 perm   1093 sec   (1217 perm/sec)   p_kst 1.899248e-03   p_cons 1.353383e-04   p_joint 4.511278e-05

Joint ci ratio: 4.978288e-01	ci left: 3.482119e-05	ci right 5.847503e-05	k: 61	n:1340000
Cons ci ratio: 2.905499e-01	ci left: 1.161137e-04	ci right 1.562486e-04	k: 181	n:1340000
KS ci ratio: 7.750797e-02	ci left: 1.831364e-03	ci right 1.979758e-03	k: 2552	n:1340000
SDK1   1340000 perm   1107 sec   (1211 perm/sec)   p_kst 1.904478e-03   p_cons 1.350746e-04   p_joint 4.552239e-05

Joint ci ratio: 4.899882e-01	ci left: 3.586013e-05	ci right 5.970655e-05	k: 63	n:1350000
Cons ci ratio: 2.889664e-01	ci left: 1.166274e-04	ci right 1.566801e-04	k: 183	n:1350000
KS ci ratio: 7.725126e-02	ci left: 1.830147e-03	ci right 1.977929e-03	k: 2569	n:1350000
SDK1   1350000 perm   1120 sec   (1205 perm/sec)   p_kst 1.902963e-03   p_cons 1.355556e-04   p_joint 4.666667e-05

Joint ci ratio: 4.899883e-01	ci left: 3.559645e-05	ci right 5.926753e-05	k: 63	n:1360000
Cons ci ratio: 2.874086e-01	ci left: 1.171342e-04	ci right 1.571046e-04	k: 185	n:1360000
KS ci ratio: 7.692264e-02	ci left: 1.832555e-03	ci right 1.979874e-03	k: 2591	n:1360000
SDK1   1360000 perm   1134 sec   (1199 perm/sec)   p_kst 1.905147e-03   p_cons 1.360294e-04   p_joint 4.632353e-05

Joint ci ratio: 4.862044e-01	ci left: 3.597668e-05	ci right 5.965405e-05	k: 64	n:1370000
Cons ci ratio: 2.858757e-01	ci left: 1.176341e-04	ci right 1.575224e-04	k: 187	n:1370000
KS ci ratio: 7.676016e-02	ci left: 1.827053e-03	ci right 1.973606e-03	k: 2602	n:1370000
SDK1   1370000 perm   1148 sec   (1194 perm/sec)   p_kst 1.899270e-03   p_cons 1.364964e-04   p_joint 4.671533e-05

Joint ci ratio: 4.825069e-01	ci left: 3.635209e-05	ci right 6.003428e-05	k: 65	n:1380000
Cons ci ratio: 2.851184e-01	ci left: 1.174544e-04	ci right 1.571573e-04	k: 188	n:1380000
KS ci ratio: 7.656936e-02	ci left: 1.823053e-03	ci right 1.968905e-03	k: 2615	n:1380000
SDK1   1380000 perm   1161 sec   (1188 perm/sec)   p_kst 1.894928e-03   p_cons 1.362319e-04   p_joint 4.710145e-05

Joint ci ratio: 4.825070e-01	ci left: 3.609056e-05	ci right 5.960238e-05	k: 65	n:1390000
Cons ci ratio: 2.843672e-01	ci left: 1.172775e-04	ci right 1.567973e-04	k: 189	n:1390000
KS ci ratio: 7.629280e-02	ci left: 1.823345e-03	ci right 1.968671e-03	k: 2634	n:1390000
SDK1   1390000 perm   1175 sec   (1183 perm/sec)   p_kst 1.894964e-03   p_cons 1.359712e-04   p_joint 4.676259e-05

Joint ci ratio: 4.825071e-01	ci left: 3.583277e-05	ci right 5.917665e-05	k: 65	n:1400000
Cons ci ratio: 2.814200e-01	ci left: 1.190943e-04	ci right 1.587366e-04	k: 193	n:1400000
KS ci ratio: 7.609107e-02	ci left: 1.820131e-03	ci right 1.964799e-03	k: 2648	n:1400000
SDK1   1400000 perm   1189 sec   (1177 perm/sec)   p_kst 1.891429e-03   p_cons 1.378571e-04   p_joint 4.642857e-05

Joint ci ratio: 4.825072e-01	ci left: 3.557863e-05	ci right 5.875696e-05	k: 65	n:1410000
Cons ci ratio: 2.806975e-01	ci left: 1.189089e-04	ci right 1.583699e-04	k: 194	n:1410000
KS ci ratio: 7.579119e-02	ci left: 1.821833e-03	ci right 1.966041e-03	k: 2669	n:1410000
SDK1   1410000 perm   1203 sec   (1172 perm/sec)   p_kst 1.892908e-03   p_cons 1.375887e-04   p_joint 4.609929e-05

Joint ci ratio: 4.825073e-01	ci left: 3.532808e-05	ci right 5.834318e-05	k: 65	n:1420000
Cons ci ratio: 2.806977e-01	ci left: 1.180715e-04	ci right 1.572547e-04	k: 194	n:1420000
KS ci ratio: 7.550888e-02	ci left: 1.822821e-03	ci right 1.966546e-03	k: 2689	n:1420000
SDK1   1420000 perm   1217 sec   (1167 perm/sec)   p_kst 1.893662e-03   p_cons 1.366197e-04   p_joint 4.577465e-05

Joint ci ratio: 4.825073e-01	ci left: 3.508103e-05	ci right 5.793519e-05	k: 65	n:1430000
Cons ci ratio: 2.806978e-01	ci left: 1.172458e-04	ci right 1.561550e-04	k: 194	n:1430000
KS ci ratio: 7.522971e-02	ci left: 1.823797e-03	ci right 1.967044e-03	k: 2709	n:1430000
SDK1   1430000 perm   1231 sec   (1161 perm/sec)   p_kst 1.894406e-03   p_cons 1.356643e-04   p_joint 4.545455e-05

Joint ci ratio: 4.825074e-01	ci left: 3.483741e-05	ci right 5.753286e-05	k: 65	n:1440000
Cons ci ratio: 2.806979e-01	ci left: 1.164316e-04	ci right 1.550706e-04	k: 194	n:1440000
KS ci ratio: 7.491238e-02	ci left: 1.826804e-03	ci right 1.969656e-03	k: 2732	n:1440000
SDK1   1440000 perm   1246 sec   (1156 perm/sec)   p_kst 1.897222e-03   p_cons 1.347222e-04   p_joint 4.513889e-05

Joint ci ratio: 4.825075e-01	ci left: 3.459715e-05	ci right 5.713609e-05	k: 65	n:1450000
Cons ci ratio: 2.799810e-01	ci left: 1.162698e-04	ci right 1.547391e-04	k: 195	n:1450000
KS ci ratio: 7.472137e-02	ci left: 1.823680e-03	ci right 1.965908e-03	k: 2746	n:1450000
SDK1   1450000 perm   1260 sec   (1151 perm/sec)   p_kst 1.893793e-03   p_cons 1.344828e-04   p_joint 4.482759e-05

Joint ci ratio: 4.825076e-01	ci left: 3.436018e-05	ci right 5.674475e-05	k: 65	n:1460000
Cons ci ratio: 2.792695e-01	ci left: 1.161103e-04	ci right 1.544121e-04	k: 196	n:1460000
KS ci ratio: 7.449128e-02	ci left: 1.822615e-03	ci right 1.964304e-03	k: 2763	n:1460000
SDK1   1460000 perm   1274 sec   (1146 perm/sec)   p_kst 1.892466e-03   p_cons 1.342466e-04   p_joint 4.452055e-05

Joint ci ratio: 4.753587e-01	ci left: 3.532267e-05	ci right 5.788239e-05	k: 67	n:1470000
Cons ci ratio: 2.771669e-01	ci left: 1.172189e-04	ci right 1.555445e-04	k: 199	n:1470000
KS ci ratio: 7.426330e-02	ci left: 1.821566e-03	ci right 1.962721e-03	k: 2780	n:1470000
SDK1   1470000 perm   1289 sec   (1141 perm/sec)   p_kst 1.891156e-03   p_cons 1.353741e-04   p_joint 4.557823e-05

Joint ci ratio: 4.685184e-01	ci left: 3.627458e-05	ci right 5.900228e-05	k: 69	n:1480000
Cons ci ratio: 2.764766e-01	ci left: 1.170557e-04	ci right 1.552160e-04	k: 200	n:1480000
KS ci ratio: 7.394478e-02	ci left: 1.825174e-03	ci right 1.965976e-03	k: 2804	n:1480000
SDK1   1480000 perm   1303 sec   (1136 perm/sec)   p_kst 1.894595e-03   p_cons 1.351351e-04   p_joint 4.662162e-05

Joint ci ratio: 4.652072e-01	ci left: 3.662329e-05	ci right 5.935587e-05	k: 70	n:1490000
Cons ci ratio: 2.751112e-01	ci left: 1.175195e-04	ci right 1.556091e-04	k: 202	n:1490000
KS ci ratio: 7.373486e-02	ci left: 1.823465e-03	ci right 1.963718e-03	k: 2820	n:1490000
SDK1   1490000 perm   1318 sec   (1131 perm/sec)   p_kst 1.892617e-03   p_cons 1.355705e-04   p_joint 4.697987e-05

Joint ci ratio: 4.652072e-01	ci left: 3.637913e-05	ci right 5.896016e-05	k: 70	n:1500000
Cons ci ratio: 2.751114e-01	ci left: 1.167361e-04	ci right 1.545718e-04	k: 202	n:1500000
KS ci ratio: 7.348780e-02	ci left: 1.823742e-03	ci right 1.963526e-03	k: 2839	n:1500000
SDK1   1500000 perm   1333 sec   (1125 perm/sec)   p_kst 1.892667e-03   p_cons 1.346667e-04   p_joint 4.666667e-05

Joint ci ratio: 4.619653e-01	ci left: 3.672308e-05	ci right 5.930880e-05	k: 71	n:1510000
Cons ci ratio: 2.744363e-01	ci left: 1.165796e-04	ci right 1.542559e-04	k: 203	n:1510000
KS ci ratio: 7.317912e-02	ci left: 1.827267e-03	ci right 1.966708e-03	k: 2863	n:1510000
SDK1   1510000 perm   1348 sec   (1120 perm/sec)   p_kst 1.896026e-03   p_cons 1.344371e-04   p_joint 4.701987e-05

Joint ci ratio: 4.619653e-01	ci left: 3.648148e-05	ci right 5.891861e-05	k: 71	n:1520000
Cons ci ratio: 2.737661e-01	ci left: 1.164253e-04	ci right 1.539440e-04	k: 204	n:1520000
KS ci ratio: 7.286166e-02	ci left: 1.831392e-03	ci right 1.970517e-03	k: 2888	n:1520000
SDK1   1520000 perm   1363 sec   (1116 perm/sec)   p_kst 1.900000e-03   p_cons 1.342105e-04   p_joint 4.671053e-05

Joint ci ratio: 4.619654e-01	ci left: 3.624304e-05	ci right 5.853353e-05	k: 71	n:1530000
Cons ci ratio: 2.711335e-01	ci left: 1.181002e-04	ci right 1.557304e-04	k: 208	n:1530000
KS ci ratio: 7.262324e-02	ci left: 1.831615e-03	ci right 1.970281e-03	k: 2907	n:1530000
SDK1   1530000 perm   1378 sec   (1111 perm/sec)   p_kst 1.900000e-03   p_cons 1.359477e-04   p_joint 4.640523e-05

Joint ci ratio: 4.619655e-01	ci left: 3.600770e-05	ci right 5.815344e-05	k: 71	n:1540000
Cons ci ratio: 2.704872e-01	ci left: 1.179386e-04	ci right 1.554125e-04	k: 209	n:1540000
KS ci ratio: 7.248646e-02	ci left: 1.826734e-03	ci right 1.964760e-03	k: 2918	n:1540000
SDK1   1540000 perm   1393 sec   (1106 perm/sec)   p_kst 1.894805e-03   p_cons 1.357143e-04   p_joint 4.610390e-05

Joint ci ratio: 4.587903e-01	ci left: 3.634570e-05	ci right 5.849777e-05	k: 72	n:1550000
Cons ci ratio: 2.698455e-01	ci left: 1.177791e-04	ci right 1.550986e-04	k: 210	n:1550000
KS ci ratio: 7.225170e-02	ci left: 1.826985e-03	ci right 1.964564e-03	k: 2937	n:1550000
SDK1   1550000 perm   1408 sec   (1101 perm/sec)   p_kst 1.894839e-03   p_cons 1.354839e-04   p_joint 4.645161e-05

Joint ci ratio: 4.587904e-01	ci left: 3.611271e-05	ci right 5.812278e-05	k: 72	n:1560000
Cons ci ratio: 2.698456e-01	ci left: 1.170241e-04	ci right 1.541043e-04	k: 210	n:1560000
KS ci ratio: 7.208028e-02	ci left: 1.824086e-03	ci right 1.961107e-03	k: 2951	n:1560000
SDK1   1560000 perm   1424 sec   (1096 perm/sec)   p_kst 1.891667e-03   p_cons 1.346154e-04   p_joint 4.615385e-05

Joint ci ratio: 4.526317e-01	ci left: 3.701031e-05	ci right 5.917176e-05	k: 74	n:1570000
Cons ci ratio: 2.679473e-01	ci left: 1.180608e-04	ci right 1.551621e-04	k: 213	n:1570000
KS ci ratio: 7.181311e-02	ci left: 1.826228e-03	ci right 1.962881e-03	k: 2973	n:1570000
SDK1   1570000 perm   1439 sec   (1091 perm/sec)   p_kst 1.893631e-03   p_cons 1.356688e-04   p_joint 4.713376e-05

Joint ci ratio: 4.526317e-01	ci left: 3.677607e-05	ci right 5.879726e-05	k: 74	n:1580000
Cons ci ratio: 2.679475e-01	ci left: 1.173136e-04	ci right 1.541801e-04	k: 213	n:1580000
KS ci ratio: 7.164479e-02	ci left: 1.823372e-03	ci right 1.959477e-03	k: 2987	n:1580000
SDK1   1580000 perm   1454 sec   (1087 perm/sec)   p_kst 1.890506e-03   p_cons 1.348101e-04   p_joint 4.683544e-05

Joint ci ratio: 4.496440e-01	ci left: 3.710222e-05	ci right 5.912741e-05	k: 75	n:1590000
Cons ci ratio: 2.673236e-01	ci left: 1.171625e-04	ci right 1.538814e-04	k: 214	n:1590000
KS ci ratio: 7.138241e-02	ci left: 1.825493e-03	ci right 1.961237e-03	k: 3009	n:1590000
SDK1   1590000 perm   1469 sec   (1082 perm/sec)   p_kst 1.892453e-03   p_cons 1.345912e-04   p_joint 4.716981e-05

Joint ci ratio: 4.496440e-01	ci left: 3.687033e-05	ci right 5.875787e-05	k: 75	n:1600000
Cons ci ratio: 2.673237e-01	ci left: 1.164302e-04	ci right 1.529197e-04	k: 214	n:1600000
KS ci ratio: 7.108767e-02	ci left: 1.829431e-03	ci right 1.964883e-03	k: 3034	n:1600000
SDK1   1600000 perm   1485 sec   (1077 perm/sec)   p_kst 1.896250e-03   p_cons 1.337500e-04   p_joint 4.687500e-05

Joint ci ratio: 4.467146e-01	ci left: 3.719232e-05	ci right 5.908371e-05	k: 76	n:1610000
Cons ci ratio: 2.673238e-01	ci left: 1.157070e-04	ci right 1.519699e-04	k: 214	n:1610000
KS ci ratio: 7.083135e-02	ci left: 1.831490e-03	ci right 1.966585e-03	k: 3056	n:1610000
SDK1   1610000 perm   1501 sec   (1073 perm/sec)   p_kst 1.898137e-03   p_cons 1.329193e-04   p_joint 4.720497e-05

Joint ci ratio: 4.438418e-01	ci left: 3.751079e-05	ci right 5.940507e-05	k: 77	n:1620000
Cons ci ratio: 2.667044e-01	ci left: 1.155688e-04	ci right 1.516903e-04	k: 215	n:1620000
KS ci ratio: 7.057778e-02	ci left: 1.833525e-03	ci right 1.968266e-03	k: 3078	n:1620000
SDK1   1620000 perm   1516 sec   (1068 perm/sec)   p_kst 1.900000e-03   p_cons 1.327160e-04   p_joint 4.753086e-05

Joint ci ratio: 4.438418e-01	ci left: 3.728066e-05	ci right 5.904063e-05	k: 77	n:1630000
Cons ci ratio: 2.667045e-01	ci left: 1.148597e-04	ci right 1.507597e-04	k: 215	n:1630000
KS ci ratio: 7.045222e-02	ci left: 1.828905e-03	ci right 1.963058e-03	k: 3089	n:1630000
SDK1   1630000 perm   1532 sec   (1064 perm/sec)   p_kst 1.895092e-03   p_cons 1.319018e-04   p_joint 4.723926e-05

Joint ci ratio: 4.410237e-01	ci left: 3.759515e-05	ci right 5.935790e-05	k: 78	n:1640000
Cons ci ratio: 2.654782e-01	ci left: 1.152975e-04	ci right 1.511411e-04	k: 217	n:1640000
KS ci ratio: 7.023661e-02	ci left: 1.829135e-03	ci right 1.962878e-03	k: 3108	n:1640000
SDK1   1640000 perm   1548 sec   (1060 perm/sec)   p_kst 1.895122e-03   p_cons 1.323171e-04   p_joint 4.756098e-05

Joint ci ratio: 4.328807e-01	ci left: 3.898545e-05	ci right 6.101515e-05	k: 81	n:1650000
Cons ci ratio: 2.636700e-01	ci left: 1.162964e-04	ci right 1.521636e-04	k: 220	n:1650000
KS ci ratio: 7.001176e-02	ci left: 1.829958e-03	ci right 1.963315e-03	k: 3128	n:1650000
SDK1   1650000 perm   1564 sec   (1055 perm/sec)   p_kst 1.895758e-03   p_cons 1.333333e-04   p_joint 4.909091e-05

Joint ci ratio: 4.302650e-01	ci left: 3.928756e-05	ci right 6.131507e-05	k: 82	n:1660000
Cons ci ratio: 2.630755e-01	ci left: 1.161584e-04	ci right 1.518890e-04	k: 221	n:1660000
KS ci ratio: 6.977795e-02	ci left: 1.831364e-03	ci right 1.964359e-03	k: 3149	n:1660000
SDK1   1660000 perm   1580 sec   (1051 perm/sec)   p_kst 1.896988e-03   p_cons 1.331325e-04   p_joint 4.939759e-05

Joint ci ratio: 4.251727e-01	ci left: 4.012096e-05	ci right 6.227371e-05	k: 84	n:1670000
Cons ci ratio: 2.613156e-01	ci left: 1.171412e-04	ci right 1.528937e-04	k: 224	n:1670000
KS ci ratio: 6.957946e-02	ci left: 1.830988e-03	ci right 1.963563e-03	k: 3167	n:1670000
SDK1   1670000 perm   1596 sec   (1046 perm/sec)   p_kst 1.896407e-03   p_cons 1.341317e-04   p_joint 5.029940e-05

Joint ci ratio: 4.251728e-01	ci left: 3.988215e-05	ci right 6.190303e-05	k: 84	n:1680000
Cons ci ratio: 2.607369e-01	ci left: 1.170003e-04	ci right 1.526177e-04	k: 225	n:1680000
KS ci ratio: 6.931728e-02	ci left: 1.834127e-03	ci right 1.966409e-03	k: 3191	n:1680000
SDK1   1680000 perm   1612 sec   (1042 perm/sec)   p_kst 1.899405e-03   p_cons 1.339286e-04   p_joint 5.000000e-05

Joint ci ratio: 4.226936e-01	ci left: 4.017474e-05	ci right 6.219124e-05	k: 85	n:1690000
Cons ci ratio: 2.584595e-01	ci left: 1.185208e-04	ci right 1.542352e-04	k: 229	n:1690000
KS ci ratio: 6.910112e-02	ci left: 1.834904e-03	ci right 1.966812e-03	k: 3211	n:1690000
SDK1   1690000 perm   1628 sec   (1038 perm/sec)   p_kst 1.900000e-03   p_cons 1.355030e-04   p_joint 5.029586e-05

Joint ci ratio: 4.178625e-01	ci left: 4.099045e-05	ci right 6.312561e-05	k: 87	n:1700000
Cons ci ratio: 2.573430e-01	ci left: 1.189241e-04	ci right 1.545802e-04	k: 231	n:1700000
KS ci ratio: 6.892971e-02	ci left: 1.833360e-03	ci right 1.964817e-03	k: 3227	n:1700000
SDK1   1700000 perm   1644 sec   (1034 perm/sec)   p_kst 1.898235e-03   p_cons 1.358824e-04   p_joint 5.117647e-05

Joint ci ratio: 4.178625e-01	ci left: 4.075074e-05	ci right 6.275646e-05	k: 87	n:1710000
Cons ci ratio: 2.556950e-01	ci left: 1.198702e-04	ci right 1.555432e-04	k: 234	n:1710000
KS ci ratio: 6.874896e-02	ci left: 1.832409e-03	ci right 1.963440e-03	k: 3244	n:1710000
SDK1   1710000 perm   1660 sec   (1030 perm/sec)   p_kst 1.897076e-03   p_cons 1.368421e-04   p_joint 5.087719e-05

Joint ci ratio: 4.178626e-01	ci left: 4.051382e-05	ci right 6.239160e-05	k: 87	n:1720000
Cons ci ratio: 2.556951e-01	ci left: 1.191733e-04	ci right 1.546389e-04	k: 234	n:1720000
KS ci ratio: 6.850653e-02	ci left: 1.834898e-03	ci right 1.965626e-03	k: 3267	n:1720000
SDK1   1720000 perm   1676 sec   (1026 perm/sec)   p_kst 1.899419e-03   p_cons 1.360465e-04   p_joint 5.058140e-05

Joint ci ratio: 4.155084e-01	ci left: 4.079706e-05	ci right 6.266926e-05	k: 88	n:1730000
Cons ci ratio: 2.546138e-01	ci left: 1.195666e-04	ci right 1.549748e-04	k: 236	n:1730000
KS ci ratio: 6.827703e-02	ci left: 1.836791e-03	ci right 1.967198e-03	k: 3289	n:1730000
SDK1   1730000 perm   1692 sec   (1022 perm/sec)   p_kst 1.901156e-03   p_cons 1.364162e-04   p_joint 5.086705e-05

Joint ci ratio: 4.131935e-01	ci left: 4.107738e-05	ci right 6.294340e-05	k: 89	n:1740000
Cons ci ratio: 2.535462e-01	ci left: 1.199557e-04	ci right 1.553066e-04	k: 238	n:1740000
KS ci ratio: 6.812200e-02	ci left: 1.834708e-03	ci right 1.964660e-03	k: 3304	n:1740000
SDK1   1740000 perm   1709 sec   (1018 perm/sec)   p_kst 1.898851e-03   p_cons 1.367816e-04   p_joint 5.114943e-05

Joint ci ratio: 4.086774e-01	ci left: 4.186736e-05	ci right 6.384410e-05	k: 91	n:1750000
Cons ci ratio: 2.530175e-01	ci left: 1.198054e-04	ci right 1.550268e-04	k: 239	n:1750000
KS ci ratio: 6.797827e-02	ci left: 1.832088e-03	ci right 1.961569e-03	k: 3318	n:1750000
SDK1   1750000 perm   1726 sec   (1014 perm/sec)   p_kst 1.896000e-03   p_cons 1.365714e-04   p_joint 5.200000e-05

Joint ci ratio: 4.064742e-01	ci left: 4.213940e-05	ci right 6.410748e-05	k: 92	n:1760000
Cons ci ratio: 2.519697e-01	ci left: 1.201891e-04	ci right 1.553541e-04	k: 241	n:1760000
KS ci ratio: 6.778452e-02	ci left: 1.832291e-03	ci right 1.961403e-03	k: 3337	n:1760000
SDK1   1760000 perm   1743 sec   (1010 perm/sec)   p_kst 1.896023e-03   p_cons 1.369318e-04   p_joint 5.227273e-05

Joint ci ratio: 4.064743e-01	ci left: 4.190132e-05	ci right 6.374529e-05	k: 92	n:1770000
Cons ci ratio: 2.514508e-01	ci left: 1.200394e-04	ci right 1.550769e-04	k: 242	n:1770000
KS ci ratio: 6.756219e-02	ci left: 1.834158e-03	ci right 1.962961e-03	k: 3359	n:1770000
SDK1   1770000 perm   1759 sec   (1006 perm/sec)   p_kst 1.897740e-03   p_cons 1.367232e-04   p_joint 5.197740e-05

Joint ci ratio: 4.064743e-01	ci left: 4.166592e-05	ci right 6.338718e-05	k: 92	n:1780000
Cons ci ratio: 2.504223e-01	ci left: 1.204180e-04	ci right 1.553998e-04	k: 244	n:1780000
KS ci ratio: 6.736198e-02	ci left: 1.834900e-03	ci right 1.963359e-03	k: 3379	n:1780000
SDK1   1780000 perm   1776 sec   (1002 perm/sec)   p_kst 1.898315e-03   p_cons 1.370787e-04   p_joint 5.168539e-05

Joint ci ratio: 4.043064e-01	ci left: 4.193484e-05	ci right 6.364839e-05	k: 93	n:1790000
Cons ci ratio: 2.494063e-01	ci left: 1.207926e-04	ci right 1.557188e-04	k: 246	n:1790000
KS ci ratio: 6.717345e-02	ci left: 1.835085e-03	ci right 1.963183e-03	k: 3398	n:1790000
SDK1   1790000 perm   1793 sec   (998 perm/sec)   p_kst 1.898324e-03   p_cons 1.374302e-04   p_joint 5.195531e-05

Joint ci ratio: 4.043065e-01	ci left: 4.170186e-05	ci right 6.329479e-05	k: 93	n:1800000
Cons ci ratio: 2.489030e-01	ci left: 1.206424e-04	ci right 1.554439e-04	k: 247	n:1800000
KS ci ratio: 6.696686e-02	ci left: 1.836361e-03	ci right 1.964139e-03	k: 3419	n:1800000
SDK1   1800000 perm   1811 sec   (994 perm/sec)   p_kst 1.899444e-03   p_cons 1.372222e-04   p_joint 5.166667e-05

Joint ci ratio: 4.043065e-01	ci left: 4.147147e-05	ci right 6.294510e-05	k: 93	n:1810000
Cons ci ratio: 2.479054e-01	ci left: 1.210121e-04	ci right 1.557587e-04	k: 249	n:1810000
KS ci ratio: 6.683030e-02	ci left: 1.833821e-03	ci right 1.961151e-03	k: 3433	n:1810000
SDK1   1810000 perm   1829 sec   (990 perm/sec)   p_kst 1.896685e-03   p_cons 1.375691e-04   p_joint 5.138122e-05

Joint ci ratio: 4.043066e-01	ci left: 4.124360e-05	ci right 6.259925e-05	k: 93	n:1820000
Cons ci ratio: 2.474111e-01	ci left: 1.208625e-04	ci right 1.554863e-04	k: 250	n:1820000
KS ci ratio: 6.668489e-02	ci left: 1.831849e-03	ci right 1.958755e-03	k: 3448	n:1820000
SDK1   1820000 perm   1846 sec   (986 perm/sec)   p_kst 1.894505e-03   p_cons 1.373626e-04   p_joint 5.109890e-05

Joint ci ratio: 4.043066e-01	ci left: 4.101822e-05	ci right 6.225718e-05	k: 93	n:1830000
Cons ci ratio: 2.464312e-01	ci left: 1.212273e-04	ci right 1.557971e-04	k: 252	n:1830000
KS ci ratio: 6.651158e-02	ci left: 1.831511e-03	ci right 1.958052e-03	k: 3466	n:1830000
SDK1   1830000 perm   1863 sec   (982 perm/sec)   p_kst 1.893989e-03   p_cons 1.377049e-04   p_joint 5.081967e-05

Joint ci ratio: 4.043067e-01	ci left: 4.079530e-05	ci right 6.191882e-05	k: 93	n:1840000
Cons ci ratio: 2.464313e-01	ci left: 1.205685e-04	ci right 1.549504e-04	k: 252	n:1840000
KS ci ratio: 6.637778e-02	ci left: 1.829040e-03	ci right 1.955145e-03	k: 3480	n:1840000
SDK1   1840000 perm   1880 sec   (979 perm/sec)   p_kst 1.891304e-03   p_cons 1.369565e-04   p_joint 5.054348e-05

Joint ci ratio: 4.021731e-01	ci left: 4.106050e-05	ci right 6.217921e-05	k: 94	n:1850000
Cons ci ratio: 2.454629e-01	ci left: 1.209312e-04	ci right 1.552604e-04	k: 254	n:1850000
KS ci ratio: 6.618789e-02	ci left: 1.829785e-03	ci right 1.955567e-03	k: 3500	n:1850000
SDK1   1850000 perm   1898 sec   (975 perm/sec)   p_kst 1.891892e-03   p_cons 1.372973e-04   p_joint 5.081081e-05

Joint ci ratio: 3.959693e-01	ci left: 4.229077e-05	ci right 6.361887e-05	k: 97	n:1860000
Cons ci ratio: 2.445059e-01	ci left: 1.212903e-04	ci right 1.555668e-04	k: 256	n:1860000
KS ci ratio: 6.605604e-02	ci left: 1.827349e-03	ci right 1.952704e-03	k: 3514	n:1860000
SDK1   1860000 perm   1915 sec   (971 perm/sec)   p_kst 1.889247e-03   p_cons 1.376344e-04   p_joint 5.215054e-05

Joint ci ratio: 3.939643e-01	ci left: 4.254626e-05	ci right 6.386627e-05	k: 98	n:1870000
Cons ci ratio: 2.430911e-01	ci left: 1.221480e-04	ci right 1.564369e-04	k: 259	n:1870000
KS ci ratio: 6.584091e-02	ci left: 1.829674e-03	ci right 1.954764e-03	k: 3537	n:1870000
SDK1   1870000 perm   1933 sec   (968 perm/sec)   p_kst 1.891444e-03   p_cons 1.385027e-04   p_joint 5.240642e-05

Joint ci ratio: 3.919895e-01	ci left: 4.279930e-05	ci right 6.411078e-05	k: 99	n:1880000
Cons ci ratio: 2.421615e-01	ci left: 1.224974e-04	ci right 1.567332e-04	k: 261	n:1880000
KS ci ratio: 6.565558e-02	ci left: 1.830405e-03	ci right 1.955180e-03	k: 3557	n:1880000
SDK1   1880000 perm   1950 sec   (964 perm/sec)   p_kst 1.892021e-03   p_cons 1.388298e-04   p_joint 5.265957e-05

Joint ci ratio: 3.900441e-01	ci left: 4.304993e-05	ci right 6.435243e-05	k: 100	n:1890000
Cons ci ratio: 2.412424e-01	ci left: 1.228434e-04	ci right 1.570261e-04	k: 263	n:1890000
KS ci ratio: 6.548097e-02	ci left: 1.830609e-03	ci right 1.955053e-03	k: 3576	n:1890000
SDK1   1890000 perm   1968 sec   (961 perm/sec)   p_kst 1.892063e-03   p_cons 1.391534e-04   p_joint 5.291005e-05

Joint ci ratio: 3.900441e-01	ci left: 4.282335e-05	ci right 6.401374e-05	k: 100	n:1900000
Cons ci ratio: 2.407868e-01	ci left: 1.226914e-04	ci right 1.567577e-04	k: 264	n:1900000
KS ci ratio: 6.530775e-02	ci left: 1.830810e-03	ci right 1.954926e-03	k: 3595	n:1900000
SDK1   1900000 perm   1986 sec   (957 perm/sec)   p_kst 1.892105e-03   p_cons 1.389474e-04   p_joint 5.263158e-05

Joint ci ratio: 3.900442e-01	ci left: 4.259914e-05	ci right 6.367859e-05	k: 100	n:1910000
Cons ci ratio: 2.403338e-01	ci left: 1.225410e-04	ci right 1.564920e-04	k: 265	n:1910000
KS ci ratio: 6.505482e-02	ci left: 1.835646e-03	ci right 1.959589e-03	k: 3623	n:1910000
SDK1   1910000 perm   2003 sec   (953 perm/sec)   p_kst 1.896859e-03   p_cons 1.387435e-04   p_joint 5.235602e-05

Joint ci ratio: 3.900442e-01	ci left: 4.237727e-05	ci right 6.334693e-05	k: 100	n:1920000
Cons ci ratio: 2.398834e-01	ci left: 1.223923e-04	ci right 1.562291e-04	k: 266	n:1920000
KS ci ratio: 6.488495e-02	ci left: 1.835820e-03	ci right 1.959440e-03	k: 3642	n:1920000
SDK1   1920000 perm   2021 sec   (950 perm/sec)   p_kst 1.896875e-03   p_cons 1.385417e-04   p_joint 5.208333e-05

Joint ci ratio: 3.980056e-01	ci left: 4.029050e-05	ci right 6.074186e-05	k: 96	n:1930000
Cons ci ratio: 2.389899e-01	ci left: 1.227323e-04	ci right 1.565179e-04	k: 268	n:1930000
KS ci ratio: 6.471640e-02	ci left: 1.835993e-03	ci right 1.959291e-03	k: 3661	n:1930000
SDK1   1930000 perm   2039 sec   (946 perm/sec)   p_kst 1.896891e-03   p_cons 1.388601e-04   p_joint 4.974093e-05

Joint ci ratio: 3.980056e-01	ci left: 4.008281e-05	ci right 6.042876e-05	k: 96	n:1940000
Cons ci ratio: 2.389900e-01	ci left: 1.220996e-04	ci right 1.557111e-04	k: 268	n:1940000
KS ci ratio: 6.459313e-02	ci left: 1.833629e-03	ci right 1.956525e-03	k: 3675	n:1940000
SDK1   1940000 perm   2057 sec   (943 perm/sec)   p_kst 1.894330e-03   p_cons 1.381443e-04   p_joint 4.948454e-05

Joint ci ratio: 4.043073e-01	ci left: 3.849401e-05	ci right 5.842599e-05	k: 93	n:1950000
Cons ci ratio: 2.385470e-01	ci left: 1.219556e-04	ci right 1.554560e-04	k: 269	n:1950000
KS ci ratio: 6.440066e-02	ci left: 1.835326e-03	ci right 1.957956e-03	k: 3697	n:1950000
SDK1   1950000 perm   2075 sec   (940 perm/sec)   p_kst 1.895897e-03   p_cons 1.379487e-04   p_joint 4.769231e-05

Joint ci ratio: 4.021737e-01	ci left: 3.875607e-05	ci right 5.868958e-05	k: 94	n:1960000
Cons ci ratio: 2.385471e-01	ci left: 1.213334e-04	ci right 1.546629e-04	k: 269	n:1960000
KS ci ratio: 6.422720e-02	ci left: 1.836002e-03	ci right 1.958334e-03	k: 3717	n:1960000
SDK1   1960000 perm   2093 sec   (936 perm/sec)   p_kst 1.896429e-03   p_cons 1.372449e-04   p_joint 4.795918e-05

Joint ci ratio: 4.000735e-01	ci left: 3.901574e-05	ci right 5.895023e-05	k: 95	n:1970000
Cons ci ratio: 2.385472e-01	ci left: 1.207175e-04	ci right 1.538778e-04	k: 269	n:1970000
KS ci ratio: 6.403796e-02	ci left: 1.837671e-03	ci right 1.959740e-03	k: 3739	n:1970000
SDK1   1970000 perm   2111 sec   (933 perm/sec)   p_kst 1.897970e-03   p_cons 1.365482e-04   p_joint 4.822335e-05

Joint ci ratio: 4.000735e-01	ci left: 3.881869e-05	ci right 5.865250e-05	k: 95	n:1980000
Cons ci ratio: 2.385473e-01	ci left: 1.201078e-04	ci right 1.531007e-04	k: 269	n:1980000
KS ci ratio: 6.391000e-02	ci left: 1.835844e-03	ci right 1.957539e-03	k: 3754	n:1980000
SDK1   1980000 perm   2129 sec   (930 perm/sec)   p_kst 1.895960e-03   p_cons 1.358586e-04   p_joint 4.797980e-05

Joint ci ratio: 4.000736e-01	ci left: 3.862362e-05	ci right 5.835777e-05	k: 95	n:1990000
Cons ci ratio: 2.385474e-01	ci left: 1.195042e-04	ci right 1.523313e-04	k: 269	n:1990000
KS ci ratio: 6.379127e-02	ci left: 1.833542e-03	ci right 1.954850e-03	k: 3768	n:1990000
SDK1   1990000 perm   2147 sec   (927 perm/sec)   p_kst 1.893467e-03   p_cons 1.351759e-04   p_joint 4.773869e-05

Joint ci ratio: 4.000736e-01	ci left: 3.843050e-05	ci right 5.806598e-05	k: 95	n:2000000
Cons ci ratio: 2.376687e-01	ci left: 1.198470e-04	ci right 1.526292e-04	k: 271	n:2000000
KS ci ratio: 6.363950e-02	ci left: 1.833231e-03	ci right 1.954219e-03	k: 3786	n:2000000
SDK1   2000000 perm   2166 sec   (924 perm/sec)   p_kst 1.893000e-03   p_cons 1.355000e-04   p_joint 4.750000e-05

Joint ci ratio: 4.000737e-01	ci left: 3.823930e-05	ci right 5.777710e-05	k: 95	n:2010000
Cons ci ratio: 2.372330e-01	ci left: 1.197187e-04	ci right 1.523969e-04	k: 272	n:2010000
KS ci ratio: 6.341371e-02	ci left: 1.837330e-03	ci right 1.958143e-03	k: 3813	n:2010000
SDK1   2010000 perm   2184 sec   (920 perm/sec)   p_kst 1.897015e-03   p_cons 1.353234e-04   p_joint 4.726368e-05

Joint ci ratio: 4.000737e-01	ci left: 3.805000e-05	ci right 5.749107e-05	k: 95	n:2020000
Cons ci ratio: 2.355138e-01	ci left: 1.209890e-04	ci right 1.537397e-04	k: 276	n:2020000
KS ci ratio: 6.323156e-02	ci left: 1.838953e-03	ci right 1.959512e-03	k: 3835	n:2020000
SDK1   2020000 perm   2202 sec   (917 perm/sec)   p_kst 1.898515e-03   p_cons 1.366337e-04   p_joint 4.702970e-05

Joint ci ratio: 4.000738e-01	ci left: 3.786256e-05	ci right 5.720787e-05	k: 95	n:2030000
Cons ci ratio: 2.346681e-01	ci left: 1.213202e-04	ci right 1.540255e-04	k: 278	n:2030000
KS ci ratio: 6.301825e-02	ci left: 1.842500e-03	ci right 1.962869e-03	k: 3861	n:2030000
SDK1   2030000 perm   2221 sec   (914 perm/sec)   p_kst 1.901970e-03   p_cons 1.369458e-04   p_joint 4.679803e-05

Joint ci ratio: 4.000738e-01	ci left: 3.767696e-05	ci right 5.692744e-05	k: 95	n:2040000
Cons ci ratio: 2.346682e-01	ci left: 1.207255e-04	ci right 1.532705e-04	k: 278	n:2040000
KS ci ratio: 6.283947e-02	ci left: 1.844082e-03	ci right 1.964201e-03	k: 3883	n:2040000
SDK1   2040000 perm   2240 sec   (911 perm/sec)   p_kst 1.903431e-03   p_cons 1.362745e-04   p_joint 4.656863e-05

Joint ci ratio: 4.000739e-01	ci left: 3.749317e-05	ci right 5.664974e-05	k: 95	n:2050000
Cons ci ratio: 2.346682e-01	ci left: 1.201366e-04	ci right 1.525228e-04	k: 278	n:2050000
KS ci ratio: 6.271854e-02	ci left: 1.842289e-03	ci right 1.962052e-03	k: 3898	n:2050000
SDK1   2050000 perm   2258 sec   (908 perm/sec)   p_kst 1.901463e-03   p_cons 1.356098e-04   p_joint 4.634146e-05

Joint ci ratio: 3.980062e-01	ci left: 3.774788e-05	ci right 5.690865e-05	k: 96	n:2060000
Cons ci ratio: 2.338316e-01	ci left: 1.204673e-04	ci right 1.528102e-04	k: 280	n:2060000
KS ci ratio: 6.263038e-02	ci left: 1.838602e-03	ci right 1.957951e-03	k: 3909	n:2060000
SDK1   2060000 perm   2277 sec   (905 perm/sec)   p_kst 1.897573e-03   p_cons 1.359223e-04   p_joint 4.660194e-05

Joint ci ratio: 3.980063e-01	ci left: 3.756552e-05	ci right 5.663373e-05	k: 96	n:2070000
Cons ci ratio: 2.334166e-01	ci left: 1.203401e-04	ci right 1.525833e-04	k: 281	n:2070000
KS ci ratio: 6.243897e-02	ci left: 1.841133e-03	ci right 1.960268e-03	k: 3933	n:2070000
SDK1   2070000 perm   2296 sec   (902 perm/sec)   p_kst 1.900000e-03   p_cons 1.357488e-04   p_joint 4.637681e-05

Joint ci ratio: 3.980063e-01	ci left: 3.738492e-05	ci right 5.636146e-05	k: 96	n:2080000
Cons ci ratio: 2.330039e-01	ci left: 1.202142e-04	ci right 1.523585e-04	k: 282	n:2080000
KS ci ratio: 6.232033e-02	ci left: 1.839380e-03	ci right 1.958167e-03	k: 3948	n:2080000
SDK1   2080000 perm   2315 sec   (899 perm/sec)   p_kst 1.898077e-03   p_cons 1.355769e-04   p_joint 4.615385e-05

Joint ci ratio: 3.980064e-01	ci left: 3.720604e-05	ci right 5.609179e-05	k: 96	n:2090000
Cons ci ratio: 2.325933e-01	ci left: 1.200896e-04	ci right 1.521359e-04	k: 283	n:2090000
KS ci ratio: 6.217880e-02	ci left: 1.839058e-03	ci right 1.957545e-03	k: 3966	n:2090000
SDK1   2090000 perm   2334 sec   (895 perm/sec)   p_kst 1.897608e-03   p_cons 1.354067e-04   p_joint 4.593301e-05

Joint ci ratio: 3.980064e-01	ci left: 3.702887e-05	ci right 5.582468e-05	k: 96	n:2100000
Cons ci ratio: 2.321849e-01	ci left: 1.199662e-04	ci right 1.519153e-04	k: 284	n:2100000
KS ci ratio: 6.203043e-02	ci left: 1.839207e-03	ci right 1.957411e-03	k: 3985	n:2100000
SDK1   2100000 perm   2353 sec   (892 perm/sec)   p_kst 1.897619e-03   p_cons 1.352381e-04   p_joint 4.571429e-05

Joint ci ratio: 3.980065e-01	ci left: 3.685338e-05	ci right 5.556011e-05	k: 96	n:2110000
Cons ci ratio: 2.317787e-01	ci left: 1.198441e-04	ci right 1.516967e-04	k: 285	n:2110000
KS ci ratio: 6.185217e-02	ci left: 1.841222e-03	ci right 1.959203e-03	k: 4008	n:2110000
SDK1   2110000 perm   2373 sec   (889 perm/sec)   p_kst 1.899526e-03   p_cons 1.350711e-04   p_joint 4.549763e-05

Joint ci ratio: 3.980065e-01	ci left: 3.667954e-05	ci right 5.529804e-05	k: 96	n:2120000
Cons ci ratio: 2.317788e-01	ci left: 1.192787e-04	ci right 1.509812e-04	k: 285	n:2120000
KS ci ratio: 6.174453e-02	ci left: 1.839039e-03	ci right 1.956668e-03	k: 4022	n:2120000
SDK1   2120000 perm   2393 sec   (886 perm/sec)   p_kst 1.897170e-03   p_cons 1.344340e-04   p_joint 4.528302e-05

Joint ci ratio: 3.959706e-01	ci left: 3.692995e-05	ci right 5.555455e-05	k: 97	n:2130000
Cons ci ratio: 2.313746e-01	ci left: 1.191610e-04	ci right 1.507690e-04	k: 286	n:2130000
KS ci ratio: 6.159924e-02	ci left: 1.839188e-03	ci right 1.956539e-03	k: 4041	n:2130000
SDK1   2130000 perm   2413 sec   (883 perm/sec)   p_kst 1.897183e-03   p_cons 1.342723e-04   p_joint 4.553991e-05

Joint ci ratio: 4.043082e-01	ci left: 3.507631e-05	ci right 5.323866e-05	k: 93	n:2140000
Cons ci ratio: 2.309726e-01	ci left: 1.190444e-04	ci right 1.505588e-04	k: 287	n:2140000
KS ci ratio: 6.143981e-02	ci left: 1.840256e-03	ci right 1.957361e-03	k: 4062	n:2140000
SDK1   2140000 perm   2433 sec   (880 perm/sec)   p_kst 1.898131e-03   p_cons 1.341121e-04   p_joint 4.345794e-05

Joint ci ratio: 4.043082e-01	ci left: 3.491316e-05	ci right 5.299104e-05	k: 93	n:2150000
Cons ci ratio: 2.309727e-01	ci left: 1.184907e-04	ci right 1.498585e-04	k: 287	n:2150000
KS ci ratio: 6.125908e-02	ci left: 1.842688e-03	ci right 1.959590e-03	k: 4086	n:2150000
SDK1   2150000 perm   2452 sec   (877 perm/sec)   p_kst 1.900465e-03   p_cons 1.334884e-04   p_joint 4.325581e-05

Joint ci ratio: 4.043082e-01	ci left: 3.475153e-05	ci right 5.274571e-05	k: 93	n:2160000
Cons ci ratio: 2.309728e-01	ci left: 1.179421e-04	ci right 1.491647e-04	k: 287	n:2160000
KS ci ratio: 6.111718e-02	ci left: 1.842819e-03	ci right 1.959449e-03	k: 4105	n:2160000
SDK1   2160000 perm   2472 sec   (874 perm/sec)   p_kst 1.900463e-03   p_cons 1.328704e-04   p_joint 4.305556e-05

Joint ci ratio: 4.021746e-01	ci left: 3.500547e-05	ci right 5.300997e-05	k: 94	n:2170000
Cons ci ratio: 2.305728e-01	ci left: 1.178328e-04	ci right 1.489648e-04	k: 288	n:2170000
KS ci ratio: 6.099849e-02	ci left: 1.841587e-03	ci right 1.957905e-03	k: 4121	n:2170000
SDK1   2170000 perm   2492 sec   (871 perm/sec)   p_kst 1.899078e-03   p_cons 1.327189e-04   p_joint 4.331797e-05

Joint ci ratio: 4.021747e-01	ci left: 3.484489e-05	ci right 5.276681e-05	k: 94	n:2180000
Cons ci ratio: 2.305729e-01	ci left: 1.172923e-04	ci right 1.482815e-04	k: 288	n:2180000
KS ci ratio: 6.084367e-02	ci left: 1.842626e-03	ci right 1.958704e-03	k: 4142	n:2180000
SDK1   2180000 perm   2512 sec   (868 perm/sec)   p_kst 1.900000e-03   p_cons 1.321101e-04   p_joint 4.311927e-05

Joint ci ratio: 4.021747e-01	ci left: 3.468578e-05	ci right 5.252586e-05	k: 94	n:2190000
Cons ci ratio: 2.305730e-01	ci left: 1.167567e-04	ci right 1.476044e-04	k: 288	n:2190000
KS ci ratio: 6.072657e-02	ci left: 1.841407e-03	ci right 1.957177e-03	k: 4158	n:2190000
SDK1   2190000 perm   2532 sec   (865 perm/sec)   p_kst 1.898630e-03   p_cons 1.315068e-04   p_joint 4.292237e-05

Joint ci ratio: 4.043084e-01	ci left: 3.411968e-05	ci right 5.178670e-05	k: 93	n:2200000
Cons ci ratio: 2.289935e-01	ci left: 1.179395e-04	ci right 1.488561e-04	k: 292	n:2200000
KS ci ratio: 6.057381e-02	ci left: 1.842438e-03	ci right 1.957971e-03	k: 4179	n:2200000
SDK1   2200000 perm   2552 sec   (862 perm/sec)   p_kst 1.899545e-03   p_cons 1.327273e-04   p_joint 4.227273e-05

Joint ci ratio: 4.021748e-01	ci left: 3.437188e-05	ci right 5.205052e-05	k: 94	n:2210000
Cons ci ratio: 2.282159e-01	ci left: 1.182590e-04	ci right 1.491393e-04	k: 294	n:2210000
KS ci ratio: 6.040059e-02	ci left: 1.844796e-03	ci right 1.960135e-03	k: 4203	n:2210000
SDK1   2210000 perm   2572 sec   (859 perm/sec)   p_kst 1.901810e-03   p_cons 1.330317e-04   p_joint 4.253394e-05

Joint ci ratio: 4.131958e-01	ci left: 3.219575e-05	ci right 4.933408e-05	k: 89	n:2220000
Cons ci ratio: 2.278301e-01	ci left: 1.181510e-04	ci right 1.489436e-04	k: 295	n:2220000
KS ci ratio: 6.025026e-02	ci left: 1.845803e-03	ci right 1.960908e-03	k: 4224	n:2220000
SDK1   2220000 perm   2592 sec   (856 perm/sec)   p_kst 1.902703e-03   p_cons 1.328829e-04   p_joint 4.009009e-05

Joint ci ratio: 4.131959e-01	ci left: 3.205138e-05	ci right 4.911285e-05	k: 89	n:2230000
Cons ci ratio: 2.278302e-01	ci left: 1.176212e-04	ci right 1.482757e-04	k: 295	n:2230000
KS ci ratio: 6.006564e-02	ci left: 1.849010e-03	ci right 1.963949e-03	k: 4250	n:2230000
SDK1   2230000 perm   2613 sec   (853 perm/sec)   p_kst 1.905830e-03   p_cons 1.322870e-04   p_joint 3.991031e-05

Joint ci ratio: 4.131959e-01	ci left: 3.190829e-05	ci right 4.889360e-05	k: 89	n:2240000
Cons ci ratio: 2.278303e-01	ci left: 1.170961e-04	ci right 1.476137e-04	k: 295	n:2240000
KS ci ratio: 5.991077e-02	ci left: 1.850430e-03	ci right 1.965150e-03	k: 4272	n:2240000
SDK1   2240000 perm   2633 sec   (851 perm/sec)   p_kst 1.907143e-03   p_cons 1.316964e-04   p_joint 3.973214e-05

Joint ci ratio: 4.131959e-01	ci left: 3.176648e-05	ci right 4.867629e-05	k: 89	n:2250000
Cons ci ratio: 2.266843e-01	ci left: 1.178331e-04	ci right 1.483668e-04	k: 298	n:2250000
KS ci ratio: 5.977802e-02	ci left: 1.850524e-03	ci right 1.964987e-03	k: 4291	n:2250000
SDK1   2250000 perm   2654 sec   (848 perm/sec)   p_kst 1.907111e-03   p_cons 1.324444e-04   p_joint 3.955556e-05

Joint ci ratio: 4.155109e-01	ci left: 3.122957e-05	ci right 4.797255e-05	k: 88	n:2260000
Cons ci ratio: 2.266844e-01	ci left: 1.173117e-04	ci right 1.477103e-04	k: 298	n:2260000
KS ci ratio: 5.964614e-02	ci left: 1.850617e-03	ci right 1.964825e-03	k: 4310	n:2260000
SDK1   2260000 perm   2674 sec   (845 perm/sec)   p_kst 1.907080e-03   p_cons 1.318584e-04   p_joint 3.893805e-05

Joint ci ratio: 4.155109e-01	ci left: 3.109199e-05	ci right 4.776122e-05	k: 88	n:2270000
Cons ci ratio: 2.259300e-01	ci left: 1.176261e-04	ci right 1.479905e-04	k: 300	n:2270000
KS ci ratio: 5.957030e-02	ci left: 1.847238e-03	ci right 1.961087e-03	k: 4321	n:2270000
SDK1   2270000 perm   2695 sec   (842 perm/sec)   p_kst 1.903524e-03   p_cons 1.321586e-04   p_joint 3.876652e-05

Joint ci ratio: 4.155110e-01	ci left: 3.095563e-05	ci right 4.755174e-05	k: 88	n:2280000
Cons ci ratio: 2.259301e-01	ci left: 1.171102e-04	ci right 1.473414e-04	k: 300	n:2280000
KS ci ratio: 5.946724e-02	ci left: 1.845617e-03	ci right 1.959163e-03	k: 4336	n:2280000
SDK1   2280000 perm   2716 sec   (840 perm/sec)   p_kst 1.901754e-03   p_cons 1.315789e-04   p_joint 3.859649e-05

Joint ci ratio: 4.131961e-01	ci left: 3.121160e-05	ci right 4.782606e-05	k: 89	n:2290000
Cons ci ratio: 2.259301e-01	ci left: 1.165988e-04	ci right 1.466980e-04	k: 300	n:2290000
KS ci ratio: 5.933741e-02	ci left: 1.845731e-03	ci right 1.959028e-03	k: 4355	n:2290000
SDK1   2290000 perm   2736 sec   (837 perm/sec)   p_kst 1.901747e-03   p_cons 1.310044e-04   p_joint 3.886463e-05

Joint ci ratio: 4.131961e-01	ci left: 3.107590e-05	ci right 4.761812e-05	k: 89	n:2300000
Cons ci ratio: 2.255558e-01	ci left: 1.165020e-04	ci right 1.465195e-04	k: 301	n:2300000
KS ci ratio: 5.916779e-02	ci left: 1.848415e-03	ci right 1.961541e-03	k: 4380	n:2300000
SDK1   2300000 perm   2757 sec   (834 perm/sec)   p_kst 1.904348e-03   p_cons 1.308696e-04   p_joint 3.869565e-05

Joint ci ratio: 4.131961e-01	ci left: 3.094137e-05	ci right 4.741198e-05	k: 89	n:2310000
Cons ci ratio: 2.251833e-01	ci left: 1.164061e-04	ci right 1.463426e-04	k: 302	n:2310000
KS ci ratio: 5.907354e-02	ci left: 1.846384e-03	ci right 1.959199e-03	k: 4394	n:2310000
SDK1   2310000 perm   2778 sec   (831 perm/sec)   p_kst 1.902165e-03   p_cons 1.307359e-04   p_joint 3.852814e-05

Joint ci ratio: 4.155111e-01	ci left: 3.042191e-05	ci right 4.673189e-05	k: 88	n:2320000
Cons ci ratio: 2.244437e-01	ci left: 1.167179e-04	ci right 1.466223e-04	k: 304	n:2320000
KS ci ratio: 5.898644e-02	ci left: 1.843946e-03	ci right 1.956441e-03	k: 4407	n:2320000
SDK1   2320000 perm   2799 sec   (829 perm/sec)   p_kst 1.899569e-03   p_cons 1.310345e-04   p_joint 3.793103e-05

Joint ci ratio: 4.155111e-01	ci left: 3.029134e-05	ci right 4.653132e-05	k: 88	n:2330000
Cons ci ratio: 2.237114e-01	ci left: 1.170272e-04	ci right 1.468995e-04	k: 306	n:2330000
KS ci ratio: 5.886639e-02	ci left: 1.843644e-03	ci right 1.955883e-03	k: 4425	n:2330000
SDK1   2330000 perm   2820 sec   (826 perm/sec)   p_kst 1.899142e-03   p_cons 1.313305e-04   p_joint 3.776824e-05

Joint ci ratio: 4.155112e-01	ci left: 3.016189e-05	ci right 4.633247e-05	k: 88	n:2340000
Cons ci ratio: 2.237115e-01	ci left: 1.165270e-04	ci right 1.462717e-04	k: 306	n:2340000
KS ci ratio: 5.871398e-02	ci left: 1.845450e-03	ci right 1.957498e-03	k: 4448	n:2340000
SDK1   2340000 perm   2841 sec   (824 perm/sec)   p_kst 1.900855e-03   p_cons 1.307692e-04   p_joint 3.760684e-05

Joint ci ratio: 4.155112e-01	ci left: 3.003354e-05	ci right 4.613531e-05	k: 88	n:2350000
Cons ci ratio: 2.237116e-01	ci left: 1.160312e-04	ci right 1.456493e-04	k: 306	n:2350000
KS ci ratio: 5.856931e-02	ci left: 1.846821e-03	ci right 1.958667e-03	k: 4470	n:2350000
SDK1   2350000 perm   2862 sec   (821 perm/sec)   p_kst 1.902128e-03   p_cons 1.302128e-04   p_joint 3.744681e-05

Joint ci ratio: 4.178655e-01	ci left: 2.952698e-05	ci right 4.547191e-05	k: 87	n:2360000
Cons ci ratio: 2.229864e-01	ci left: 1.163396e-04	ci right 1.459269e-04	k: 308	n:2360000
KS ci ratio: 5.841268e-02	ci left: 1.849016e-03	ci right 1.960686e-03	k: 4494	n:2360000
SDK1   2360000 perm   2884 sec   (818 perm/sec)   p_kst 1.904237e-03   p_cons 1.305085e-04   p_joint 3.686441e-05

Joint ci ratio: 4.155113e-01	ci left: 2.978009e-05	ci right 4.574599e-05	k: 88	n:2370000
Cons ci ratio: 2.215568e-01	ci left: 1.174425e-04	ci right 1.470928e-04	k: 312	n:2370000
KS ci ratio: 5.830256e-02	ci left: 1.848283e-03	ci right 1.959691e-03	k: 4511	n:2370000
SDK1   2370000 perm   2905 sec   (816 perm/sec)   p_kst 1.903376e-03   p_cons 1.316456e-04   p_joint 3.713080e-05

Joint ci ratio: 4.131964e-01	ci left: 3.003133e-05	ci right 4.601752e-05	k: 89	n:2380000
Cons ci ratio: 2.205025e-01	ci left: 1.181398e-04	ci right 1.478049e-04	k: 315	n:2380000
KS ci ratio: 5.818019e-02	ci left: 1.848384e-03	ci right 1.959556e-03	k: 4530	n:2380000
SDK1   2380000 perm   2927 sec   (813 perm/sec)   p_kst 1.903361e-03   p_cons 1.323529e-04   p_joint 3.739496e-05

Joint ci ratio: 4.131964e-01	ci left: 2.990567e-05	ci right 4.582497e-05	k: 89	n:2390000
Cons ci ratio: 2.205026e-01	ci left: 1.176455e-04	ci right 1.471865e-04	k: 315	n:2390000
KS ci ratio: 5.803942e-02	ci left: 1.849722e-03	ci right 1.960696e-03	k: 4552	n:2390000
SDK1   2390000 perm   2949 sec   (810 perm/sec)   p_kst 1.904603e-03   p_cons 1.317992e-04   p_joint 3.723849e-05

Joint ci ratio: 4.109198e-01	ci left: 3.015453e-05	ci right 4.609367e-05	k: 90	n:2400000
Cons ci ratio: 2.194632e-01	ci left: 1.183364e-04	ci right 1.478919e-04	k: 318	n:2400000
KS ci ratio: 5.793140e-02	ci left: 1.848995e-03	ci right 1.959712e-03	k: 4569	n:2400000
SDK1   2400000 perm   2971 sec   (808 perm/sec)   p_kst 1.903750e-03   p_cons 1.325000e-04   p_joint 3.750000e-05

Joint ci ratio: 4.109198e-01	ci left: 3.002941e-05	ci right 4.590241e-05	k: 90	n:2410000
Cons ci ratio: 2.194633e-01	ci left: 1.178454e-04	ci right 1.472783e-04	k: 318	n:2410000
KS ci ratio: 5.786190e-02	ci left: 1.845821e-03	ci right 1.956211e-03	k: 4580	n:2410000
SDK1   2410000 perm   2992 sec   (805 perm/sec)   p_kst 1.900415e-03   p_cons 1.319502e-04   p_joint 3.734440e-05

Joint ci ratio: 4.109198e-01	ci left: 2.990532e-05	ci right 4.571273e-05	k: 90	n:2420000
Cons ci ratio: 2.184385e-01	ci left: 1.185301e-04	ci right 1.479772e-04	k: 321	n:2420000
KS ci ratio: 5.774228e-02	ci left: 1.845931e-03	ci right 1.956092e-03	k: 4599	n:2420000
SDK1   2420000 perm   3014 sec   (803 perm/sec)   p_kst 1.900413e-03   p_cons 1.326446e-04   p_joint 3.719008e-05

Joint ci ratio: 4.109199e-01	ci left: 2.978225e-05	ci right 4.552461e-05	k: 90	n:2430000
Cons ci ratio: 2.181001e-01	ci left: 1.184314e-04	ci right 1.478023e-04	k: 322	n:2430000
KS ci ratio: 5.762340e-02	ci left: 1.846041e-03	ci right 1.955974e-03	k: 4618	n:2430000
SDK1   2430000 perm   3036 sec   (800 perm/sec)   p_kst 1.900412e-03   p_cons 1.325103e-04   p_joint 3.703704e-05

Joint ci ratio: 4.109199e-01	ci left: 2.966019e-05	ci right 4.533804e-05	k: 90	n:2440000
Cons ci ratio: 2.177633e-01	ci left: 1.183334e-04	ci right 1.476287e-04	k: 323	n:2440000
KS ci ratio: 5.754255e-02	ci left: 1.843726e-03	ci right 1.953363e-03	k: 4631	n:2440000
SDK1   2440000 perm   3058 sec   (798 perm/sec)   p_kst 1.897951e-03   p_cons 1.323770e-04   p_joint 3.688525e-05

Joint ci ratio: 4.086805e-01	ci left: 2.990521e-05	ci right 4.560301e-05	k: 91	n:2450000
Cons ci ratio: 2.174280e-01	ci left: 1.182364e-04	ci right 1.474565e-04	k: 324	n:2450000
KS ci ratio: 5.743727e-02	ci left: 1.843040e-03	ci right 1.952428e-03	k: 4648	n:2450000
SDK1   2450000 perm   3080 sec   (795 perm/sec)   p_kst 1.897143e-03   p_cons 1.322449e-04   p_joint 3.714286e-05

Joint ci ratio: 4.086805e-01	ci left: 2.978365e-05	ci right 4.541763e-05	k: 91	n:2460000
Cons ci ratio: 2.170943e-01	ci left: 1.181401e-04	ci right 1.472857e-04	k: 325	n:2460000
KS ci ratio: 5.732026e-02	ci left: 1.843161e-03	ci right 1.952326e-03	k: 4667	n:2460000
SDK1   2460000 perm   3102 sec   (793 perm/sec)   p_kst 1.897154e-03   p_cons 1.321138e-04   p_joint 3.699187e-05

Joint ci ratio: 4.086806e-01	ci left: 2.966307e-05	ci right 4.523375e-05	k: 91	n:2470000
Cons ci ratio: 2.167621e-01	ci left: 1.180447e-04	ci right 1.471162e-04	k: 326	n:2470000
KS ci ratio: 5.716731e-02	ci left: 1.845675e-03	ci right 1.954688e-03	k: 4692	n:2470000
SDK1   2470000 perm   3125 sec   (790 perm/sec)   p_kst 1.899595e-03   p_cons 1.319838e-04   p_joint 3.684211e-05

Joint ci ratio: 4.086806e-01	ci left: 2.954346e-05	ci right 4.505136e-05	k: 91	n:2480000
Cons ci ratio: 2.161022e-01	ci left: 1.183314e-04	ci right 1.473731e-04	k: 328	n:2480000
KS ci ratio: 5.704587e-02	ci left: 1.846182e-03	ci right 1.954986e-03	k: 4712	n:2480000
SDK1   2480000 perm   3148 sec   (788 perm/sec)   p_kst 1.900000e-03   p_cons 1.322581e-04   p_joint 3.669355e-05

Joint ci ratio: 4.064774e-01	ci left: 2.978524e-05	ci right 4.531300e-05	k: 92	n:2490000
Cons ci ratio: 2.157746e-01	ci left: 1.182361e-04	ci right 1.472045e-04	k: 329	n:2490000
KS ci ratio: 5.695535e-02	ci left: 1.844706e-03	ci right 1.953245e-03	k: 4727	n:2490000
SDK1   2490000 perm   3170 sec   (785 perm/sec)   p_kst 1.898394e-03   p_cons 1.321285e-04   p_joint 3.694779e-05

Joint ci ratio: 4.064774e-01	ci left: 2.966609e-05	ci right 4.513175e-05	k: 92	n:2500000
Cons ci ratio: 2.154484e-01	ci left: 1.181416e-04	ci right 1.470373e-04	k: 330	n:2500000
KS ci ratio: 5.683526e-02	ci left: 1.845214e-03	ci right 1.953545e-03	k: 4747	n:2500000
SDK1   2500000 perm   3193 sec   (783 perm/sec)   p_kst 1.898800e-03   p_cons 1.320000e-04   p_joint 3.680000e-05

Joint ci ratio: 4.064775e-01	ci left: 2.954790e-05	ci right 4.495194e-05	k: 92	n:2510000
Cons ci ratio: 2.151237e-01	ci left: 1.180478e-04	ci right 1.468713e-04	k: 331	n:2510000
KS ci ratio: 5.673380e-02	ci left: 1.844539e-03	ci right 1.952631e-03	k: 4764	n:2510000
SDK1   2510000 perm   3216 sec   (781 perm/sec)   p_kst 1.898008e-03   p_cons 1.318725e-04   p_joint 3.665339e-05

Joint ci ratio: 4.064775e-01	ci left: 2.943065e-05	ci right 4.477356e-05	k: 92	n:2520000
Cons ci ratio: 2.148004e-01	ci left: 1.179548e-04	ci right 1.467066e-04	k: 332	n:2520000
KS ci ratio: 5.666258e-02	ci left: 1.841914e-03	ci right 1.949712e-03	k: 4776	n:2520000
SDK1   2520000 perm   3238 sec   (778 perm/sec)   p_kst 1.895238e-03   p_cons 1.317460e-04   p_joint 3.650794e-05

Joint ci ratio: 4.155118e-01	ci left: 2.789676e-05	ci right 4.285297e-05	k: 88	n:2530000
Cons ci ratio: 2.138393e-01	ci left: 1.186107e-04	ci right 1.473761e-04	k: 335	n:2530000
KS ci ratio: 5.658570e-02	ci left: 1.839699e-03	ci right 1.947217e-03	k: 4789	n:2530000
SDK1   2530000 perm   3261 sec   (776 perm/sec)   p_kst 1.892885e-03   p_cons 1.324111e-04   p_joint 3.478261e-05

Joint ci ratio: 4.155118e-01	ci left: 2.778693e-05	ci right 4.268426e-05	k: 88	n:2540000
Cons ci ratio: 2.132057e-01	ci left: 1.188890e-04	ci right 1.476253e-04	k: 337	n:2540000
KS ci ratio: 5.650914e-02	ci left: 1.837502e-03	ci right 1.944741e-03	k: 4802	n:2540000
SDK1   2540000 perm   3284 sec   (773 perm/sec)   p_kst 1.890551e-03   p_cons 1.326772e-04   p_joint 3.464567e-05

Joint ci ratio: 4.155118e-01	ci left: 2.767796e-05	ci right 4.251687e-05	k: 88	n:2550000
Cons ci ratio: 2.125776e-01	ci left: 1.191653e-04	ci right 1.478725e-04	k: 339	n:2550000
KS ci ratio: 5.640356e-02	ci left: 1.837255e-03	ci right 1.944273e-03	k: 4820	n:2550000
SDK1   2550000 perm   3307 sec   (771 perm/sec)   p_kst 1.890196e-03   p_cons 1.329412e-04   p_joint 3.450980e-05

Joint ci ratio: 4.155119e-01	ci left: 2.756984e-05	ci right 4.235079e-05	k: 88	n:2560000
Cons ci ratio: 2.125777e-01	ci left: 1.186998e-04	ci right 1.472948e-04	k: 339	n:2560000
KS ci ratio: 5.625200e-02	ci left: 1.840091e-03	ci right 1.946978e-03	k: 4846	n:2560000
SDK1   2560000 perm   3330 sec   (769 perm/sec)   p_kst 1.892969e-03   p_cons 1.324219e-04   p_joint 3.437500e-05

Joint ci ratio: 4.131970e-01	ci left: 2.781110e-05	ci right 4.261546e-05	k: 89	n:2570000
Cons ci ratio: 2.125777e-01	ci left: 1.182380e-04	ci right 1.467217e-04	k: 339	n:2570000
KS ci ratio: 5.615363e-02	ci left: 1.839453e-03	ci right 1.946110e-03	k: 4863	n:2570000
SDK1   2570000 perm   3353 sec   (766 perm/sec)   p_kst 1.892218e-03   p_cons 1.319066e-04   p_joint 3.463035e-05

Joint ci ratio: 4.131970e-01	ci left: 2.770331e-05	ci right 4.245028e-05	k: 89	n:2580000
Cons ci ratio: 2.125778e-01	ci left: 1.177797e-04	ci right 1.461530e-04	k: 339	n:2580000
KS ci ratio: 5.603278e-02	ci left: 1.840349e-03	ci right 1.946820e-03	k: 4884	n:2580000
SDK1   2580000 perm   3376 sec   (764 perm/sec)   p_kst 1.893023e-03   p_cons 1.313953e-04   p_joint 3.449612e-05

Joint ci ratio: 4.109204e-01	ci left: 2.794242e-05	ci right 4.271229e-05	k: 90	n:2590000
Cons ci ratio: 2.119553e-01	ci left: 1.180561e-04	ci right 1.464019e-04	k: 341	n:2590000
KS ci ratio: 5.592413e-02	ci left: 1.840477e-03	ci right 1.946742e-03	k: 4903	n:2590000
SDK1   2590000 perm   3400 sec   (762 perm/sec)   p_kst 1.893050e-03   p_cons 1.316602e-04   p_joint 3.474903e-05

Joint ci ratio: 4.109204e-01	ci left: 2.783495e-05	ci right 4.254802e-05	k: 90	n:2600000
Cons ci ratio: 2.116461e-01	ci left: 1.179662e-04	ci right 1.462438e-04	k: 342	n:2600000
KS ci ratio: 5.579907e-02	ci left: 1.841741e-03	ci right 1.947835e-03	k: 4925	n:2600000
SDK1   2600000 perm   3424 sec   (759 perm/sec)   p_kst 1.894231e-03   p_cons 1.315385e-04   p_joint 3.461538e-05

Joint ci ratio: 4.109204e-01	ci left: 2.772830e-05	ci right 4.238500e-05	k: 90	n:2610000
Cons ci ratio: 2.107265e-01	ci left: 1.186029e-04	ci right 1.468936e-04	k: 345	n:2610000
KS ci ratio: 5.569741e-02	ci left: 1.841485e-03	ci right 1.947364e-03	k: 4943	n:2610000
SDK1   2610000 perm   3447 sec   (757 perm/sec)   p_kst 1.893870e-03   p_cons 1.321839e-04   p_joint 3.448276e-05

Joint ci ratio: 4.109204e-01	ci left: 2.762246e-05	ci right 4.222322e-05	k: 90	n:2620000
Cons ci ratio: 2.104226e-01	ci left: 1.185118e-04	ci right 1.467347e-04	k: 346	n:2620000
KS ci ratio: 5.561316e-02	ci left: 1.840102e-03	ci right 1.945736e-03	k: 4958	n:2620000
SDK1   2620000 perm   3470 sec   (755 perm/sec)   p_kst 1.892366e-03   p_cons 1.320611e-04   p_joint 3.435115e-05

Joint ci ratio: 4.109205e-01	ci left: 2.751744e-05	ci right 4.206268e-05	k: 90	n:2630000
Cons ci ratio: 2.104227e-01	ci left: 1.180611e-04	ci right 1.461768e-04	k: 346	n:2630000
KS ci ratio: 5.549017e-02	ci left: 1.841354e-03	ci right 1.946819e-03	k: 4980	n:2630000
SDK1   2630000 perm   3494 sec   (753 perm/sec)   p_kst 1.893536e-03   p_cons 1.315589e-04   p_joint 3.422053e-05

Joint ci ratio: 4.155121e-01	ci left: 2.673439e-05	ci right 4.106744e-05	k: 88	n:2640000
Cons ci ratio: 2.098189e-01	ci left: 1.183317e-04	ci right 1.464205e-04	k: 348	n:2640000
KS ci ratio: 5.537354e-02	ci left: 1.842224e-03	ci right 1.947510e-03	k: 5001	n:2640000
SDK1   2640000 perm   3518 sec   (750 perm/sec)   p_kst 1.894318e-03   p_cons 1.318182e-04   p_joint 3.333333e-05

Joint ci ratio: 4.155121e-01	ci left: 2.663351e-05	ci right 4.091247e-05	k: 88	n:2650000
Cons ci ratio: 2.089228e-01	ci left: 1.189578e-04	ci right 1.470593e-04	k: 351	n:2650000
KS ci ratio: 5.528522e-02	ci left: 1.841226e-03	ci right 1.946282e-03	k: 5017	n:2650000
SDK1   2650000 perm   3541 sec   (748 perm/sec)   p_kst 1.893208e-03   p_cons 1.324528e-04   p_joint 3.320755e-05

Joint ci ratio: 4.155121e-01	ci left: 2.653338e-05	ci right 4.075866e-05	k: 88	n:2660000
Cons ci ratio: 2.086267e-01	ci left: 1.188669e-04	ci right 1.469020e-04	k: 352	n:2660000
KS ci ratio: 5.518634e-02	ci left: 1.840978e-03	ci right 1.945826e-03	k: 5035	n:2660000
SDK1   2660000 perm   3565 sec   (746 perm/sec)   p_kst 1.892857e-03   p_cons 1.323308e-04   p_joint 3.308271e-05

Joint ci ratio: 4.131972e-01	ci left: 2.676949e-05	ci right 4.101938e-05	k: 89	n:2670000
Cons ci ratio: 2.080381e-01	ci left: 1.191317e-04	ci right 1.471399e-04	k: 354	n:2670000
KS ci ratio: 5.510438e-02	ci left: 1.839623e-03	ci right 1.944233e-03	k: 5050	n:2670000
SDK1   2670000 perm   3590 sec   (744 perm/sec)   p_kst 1.891386e-03   p_cons 1.325843e-04   p_joint 3.333333e-05

Joint ci ratio: 4.086812e-01	ci left: 2.733871e-05	ci right 4.168933e-05	k: 91	n:2680000
Cons ci ratio: 2.080382e-01	ci left: 1.186872e-04	ci right 1.465909e-04	k: 354	n:2680000
KS ci ratio: 5.501190e-02	ci left: 1.839015e-03	ci right 1.943409e-03	k: 5067	n:2680000
SDK1   2680000 perm   3614 sec   (742 perm/sec)   p_kst 1.890672e-03   p_cons 1.320896e-04   p_joint 3.395522e-05

Joint ci ratio: 4.086812e-01	ci left: 2.723708e-05	ci right 4.153435e-05	k: 91	n:2690000
Cons ci ratio: 2.080382e-01	ci left: 1.182460e-04	ci right 1.460459e-04	k: 354	n:2690000
KS ci ratio: 5.490907e-02	ci left: 1.839145e-03	ci right 1.943345e-03	k: 5086	n:2690000
SDK1   2690000 perm   3638 sec   (739 perm/sec)   p_kst 1.890706e-03   p_cons 1.315985e-04   p_joint 3.382900e-05

Joint ci ratio: 4.064780e-01	ci left: 2.746860e-05	ci right 4.178867e-05	k: 92	n:2700000
Cons ci ratio: 2.074546e-01	ci left: 1.185102e-04	ci right 1.462842e-04	k: 356	n:2700000
KS ci ratio: 5.484449e-02	ci left: 1.836716e-03	ci right 1.940653e-03	k: 5098	n:2700000
SDK1   2700000 perm   3663 sec   (737 perm/sec)   p_kst 1.888148e-03   p_cons 1.318519e-04   p_joint 3.407407e-05

Joint ci ratio: 4.064780e-01	ci left: 2.736724e-05	ci right 4.163446e-05	k: 92	n:2710000
Cons ci ratio: 2.071647e-01	ci left: 1.184228e-04	ci right 1.461326e-04	k: 357	n:2710000
KS ci ratio: 5.476404e-02	ci left: 1.835398e-03	ci right 1.939103e-03	k: 5113	n:2710000
SDK1   2710000 perm   3687 sec   (735 perm/sec)   p_kst 1.886716e-03   p_cons 1.317343e-04   p_joint 3.394834e-05

Joint ci ratio: 4.064780e-01	ci left: 2.726662e-05	ci right 4.148140e-05	k: 92	n:2720000
Cons ci ratio: 2.068760e-01	ci left: 1.183360e-04	ci right 1.459820e-04	k: 358	n:2720000
KS ci ratio: 5.467860e-02	ci left: 1.834452e-03	ci right 1.937936e-03	k: 5129	n:2720000
SDK1   2720000 perm   3712 sec   (733 perm/sec)   p_kst 1.885662e-03   p_cons 1.316176e-04   p_joint 3.382353e-05

Joint ci ratio: 4.064781e-01	ci left: 2.716674e-05	ci right 4.132945e-05	k: 92	n:2730000
Cons ci ratio: 2.065885e-01	ci left: 1.182499e-04	ci right 1.458325e-04	k: 359	n:2730000
KS ci ratio: 5.458824e-02	ci left: 1.833875e-03	ci right 1.937150e-03	k: 5146	n:2730000
SDK1   2730000 perm   3736 sec   (731 perm/sec)   p_kst 1.884982e-03   p_cons 1.315018e-04   p_joint 3.369963e-05

Joint ci ratio: 4.043101e-01	ci left: 2.739534e-05	ci right 4.158060e-05	k: 93	n:2740000
Cons ci ratio: 2.065885e-01	ci left: 1.178183e-04	ci right 1.453003e-04	k: 359	n:2740000
KS ci ratio: 5.450362e-02	ci left: 1.832941e-03	ci right 1.935999e-03	k: 5162	n:2740000
SDK1   2740000 perm   3761 sec   (729 perm/sec)   p_kst 1.883942e-03   p_cons 1.310219e-04   p_joint 3.394161e-05

Joint ci ratio: 4.043101e-01	ci left: 2.729572e-05	ci right 4.142940e-05	k: 93	n:2750000
Cons ci ratio: 2.063022e-01	ci left: 1.177347e-04	ci right 1.451543e-04	k: 360	n:2750000
KS ci ratio: 5.439309e-02	ci left: 1.833809e-03	ci right 1.936699e-03	k: 5183	n:2750000
SDK1   2750000 perm   3786 sec   (726 perm/sec)   p_kst 1.884727e-03   p_cons 1.309091e-04   p_joint 3.381818e-05

Joint ci ratio: 4.021765e-01	ci left: 2.752239e-05	ci right 4.167817e-05	k: 94	n:2760000
Cons ci ratio: 2.063023e-01	ci left: 1.173081e-04	ci right 1.446284e-04	k: 360	n:2760000
KS ci ratio: 5.425192e-02	ci left: 1.836814e-03	ci right 1.939598e-03	k: 5210	n:2760000
SDK1   2760000 perm   3811 sec   (724 perm/sec)   p_kst 1.887681e-03   p_cons 1.304348e-04   p_joint 3.405797e-05

Joint ci ratio: 4.021765e-01	ci left: 2.742303e-05	ci right 4.152771e-05	k: 94	n:2770000
Cons ci ratio: 2.060171e-01	ci left: 1.172270e-04	ci right 1.444859e-04	k: 361	n:2770000
KS ci ratio: 5.413773e-02	ci left: 1.838018e-03	ci right 1.940645e-03	k: 5232	n:2770000
SDK1   2770000 perm   3836 sec   (722 perm/sec)   p_kst 1.888809e-03   p_cons 1.303249e-04   p_joint 3.393502e-05

Joint ci ratio: 4.021766e-01	ci left: 2.732439e-05	ci right 4.137833e-05	k: 94	n:2780000
Cons ci ratio: 2.060172e-01	ci left: 1.168053e-04	ci right 1.439662e-04	k: 361	n:2780000
KS ci ratio: 5.401910e-02	ci left: 1.839568e-03	ci right 1.942050e-03	k: 5255	n:2780000
SDK1   2780000 perm   3861 sec   (720 perm/sec)   p_kst 1.890288e-03   p_cons 1.298561e-04   p_joint 3.381295e-05

Joint ci ratio: 4.021766e-01	ci left: 2.722645e-05	ci right 4.123002e-05	k: 94	n:2790000
Cons ci ratio: 2.054504e-01	ci left: 1.170666e-04	ci right 1.442039e-04	k: 363	n:2790000
KS ci ratio: 5.389614e-02	ci left: 1.841460e-03	ci right 1.943807e-03	k: 5279	n:2790000
SDK1   2790000 perm   3886 sec   (718 perm/sec)   p_kst 1.892115e-03   p_cons 1.301075e-04   p_joint 3.369176e-05

Joint ci ratio: 4.021766e-01	ci left: 2.712921e-05	ci right 4.108277e-05	k: 94	n:2800000
Cons ci ratio: 2.054504e-01	ci left: 1.166485e-04	ci right 1.436889e-04	k: 363	n:2800000
KS ci ratio: 5.375879e-02	ci left: 1.844397e-03	ci right 1.946638e-03	k: 5306	n:2800000
SDK1   2800000 perm   3911 sec   (716 perm/sec)   p_kst 1.895000e-03   p_cons 1.296429e-04   p_joint 3.357143e-05

Joint ci ratio: 4.021766e-01	ci left: 2.703267e-05	ci right 4.093657e-05	k: 94	n:2810000
Cons ci ratio: 2.054505e-01	ci left: 1.162333e-04	ci right 1.431775e-04	k: 363	n:2810000
KS ci ratio: 5.367291e-02	ci left: 1.843802e-03	ci right 1.945841e-03	k: 5323	n:2810000
SDK1   2810000 perm   3936 sec   (714 perm/sec)   p_kst 1.894306e-03   p_cons 1.291815e-04   p_joint 3.345196e-05

Joint ci ratio: 4.021767e-01	ci left: 2.693681e-05	ci right 4.079141e-05	k: 94	n:2820000
Cons ci ratio: 2.054505e-01	ci left: 1.158212e-04	ci right 1.426698e-04	k: 363	n:2820000
KS ci ratio: 5.355230e-02	ci left: 1.845660e-03	ci right 1.947566e-03	k: 5347	n:2820000
SDK1   2820000 perm   3961 sec   (712 perm/sec)   p_kst 1.896099e-03   p_cons 1.287234e-04   p_joint 3.333333e-05

Joint ci ratio: 4.355492e-01	ci left: 2.241526e-05	ci right 3.518254e-05	k: 80	n:2830000
Cons ci ratio: 2.048884e-01	ci left: 1.160823e-04	ci right 1.429087e-04	k: 365	n:2830000
KS ci ratio: 5.345742e-02	ci left: 1.845762e-03	ci right 1.947487e-03	k: 5366	n:2830000
SDK1   2830000 perm   3987 sec   (710 perm/sec)   p_kst 1.896113e-03   p_cons 1.289753e-04   p_joint 2.826855e-05

Joint ci ratio: 4.355493e-01	ci left: 2.233634e-05	ci right 3.505866e-05	k: 80	n:2840000
Cons ci ratio: 2.048884e-01	ci left: 1.156736e-04	ci right 1.424055e-04	k: 365	n:2840000
KS ci ratio: 5.338788e-02	ci left: 1.844127e-03	ci right 1.945626e-03	k: 5380	n:2840000
SDK1   2840000 perm   4013 sec   (708 perm/sec)   p_kst 1.894366e-03   p_cons 1.285211e-04   p_joint 2.816901e-05

Joint ci ratio: 4.355493e-01	ci left: 2.225796e-05	ci right 3.493564e-05	k: 80	n:2850000
Cons ci ratio: 2.048885e-01	ci left: 1.152677e-04	ci right 1.419058e-04	k: 365	n:2850000
KS ci ratio: 5.330871e-02	ci left: 1.843195e-03	ci right 1.944488e-03	k: 5396	n:2850000
SDK1   2850000 perm   4039 sec   (706 perm/sec)   p_kst 1.893333e-03   p_cons 1.280702e-04   p_joint 2.807018e-05

Joint ci ratio: 4.277007e-01	ci left: 2.311511e-05	ci right 3.597574e-05	k: 83	n:2860000
Cons ci ratio: 2.040538e-01	ci left: 1.158599e-04	ci right 1.425122e-04	k: 368	n:2860000
KS ci ratio: 5.317579e-02	ci left: 1.846065e-03	ci right 1.947255e-03	k: 5423	n:2860000
SDK1   2860000 perm   4065 sec   (704 perm/sec)   p_kst 1.896154e-03   p_cons 1.286713e-04   p_joint 2.902098e-05

Joint ci ratio: 4.277007e-01	ci left: 2.303457e-05	ci right 3.585039e-05	k: 83	n:2870000
Cons ci ratio: 2.040539e-01	ci left: 1.154562e-04	ci right 1.420156e-04	k: 368	n:2870000
KS ci ratio: 5.310734e-02	ci left: 1.844446e-03	ci right 1.945413e-03	k: 5437	n:2870000
SDK1   2870000 perm   4091 sec   (702 perm/sec)   p_kst 1.894425e-03   p_cons 1.282230e-04   p_joint 2.891986e-05

Joint ci ratio: 4.277008e-01	ci left: 2.295459e-05	ci right 3.572591e-05	k: 83	n:2880000
Cons ci ratio: 2.035031e-01	ci left: 1.157143e-04	ci right 1.422524e-04	k: 370	n:2880000
KS ci ratio: 5.302941e-02	ci left: 1.843524e-03	ci right 1.944287e-03	k: 5453	n:2880000
SDK1   2880000 perm   4117 sec   (700 perm/sec)   p_kst 1.893403e-03   p_cons 1.284722e-04   p_joint 2.881944e-05

Joint ci ratio: 4.277008e-01	ci left: 2.287516e-05	ci right 3.560230e-05	k: 83	n:2890000
Cons ci ratio: 2.032294e-01	ci left: 1.156423e-04	ci right 1.421238e-04	k: 371	n:2890000
KS ci ratio: 5.294213e-02	ci left: 1.843291e-03	ci right 1.943871e-03	k: 5471	n:2890000
SDK1   2890000 perm   4143 sec   (698 perm/sec)   p_kst 1.893080e-03   p_cons 1.283737e-04   p_joint 2.871972e-05

Joint ci ratio: 4.277008e-01	ci left: 2.279628e-05	ci right 3.547953e-05	k: 83	n:2900000
Cons ci ratio: 2.029568e-01	ci left: 1.155709e-04	ci right 1.419960e-04	k: 372	n:2900000
KS ci ratio: 5.286492e-02	ci left: 1.842379e-03	ci right 1.942758e-03	k: 5487	n:2900000
SDK1   2900000 perm   4169 sec   (696 perm/sec)   p_kst 1.892069e-03   p_cons 1.282759e-04   p_joint 2.862069e-05

Joint ci ratio: 4.277008e-01	ci left: 2.271794e-05	ci right 3.535761e-05	k: 83	n:2910000
Cons ci ratio: 2.029569e-01	ci left: 1.151737e-04	ci right 1.415081e-04	k: 372	n:2910000
KS ci ratio: 5.279286e-02	ci left: 1.841134e-03	ci right 1.941305e-03	k: 5502	n:2910000
SDK1   2910000 perm   4196 sec   (694 perm/sec)   p_kst 1.890722e-03   p_cons 1.278351e-04   p_joint 2.852234e-05

Joint ci ratio: 4.277008e-01	ci left: 2.264014e-05	ci right 3.523652e-05	k: 83	n:2920000
Cons ci ratio: 2.029569e-01	ci left: 1.147793e-04	ci right 1.410234e-04	k: 372	n:2920000
KS ci ratio: 5.274025e-02	ci left: 1.838546e-03	ci right 1.938473e-03	k: 5513	n:2920000
SDK1   2920000 perm   4222 sec   (692 perm/sec)   p_kst 1.888014e-03   p_cons 1.273973e-04   p_joint 2.842466e-05

Joint ci ratio: 4.277009e-01	ci left: 2.256287e-05	ci right 3.511626e-05	k: 83	n:2930000
Cons ci ratio: 2.026854e-01	ci left: 1.147115e-04	ci right 1.409007e-04	k: 373	n:2930000
KS ci ratio: 5.264962e-02	ci left: 1.838671e-03	ci right 1.938427e-03	k: 5532	n:2930000
SDK1   2930000 perm   4249 sec   (690 perm/sec)   p_kst 1.888055e-03   p_cons 1.273038e-04   p_joint 2.832765e-05

Joint ci ratio: 4.251775e-01	ci left: 2.278975e-05	ci right 3.537325e-05	k: 84	n:2940000
Cons ci ratio: 2.021456e-01	ci left: 1.149671e-04	ci right 1.411362e-04	k: 375	n:2940000
KS ci ratio: 5.253575e-02	ci left: 1.840473e-03	ci right 1.940104e-03	k: 5556	n:2940000
SDK1   2940000 perm   4275 sec   (688 perm/sec)   p_kst 1.889796e-03   p_cons 1.275510e-04   p_joint 2.857143e-05

Joint ci ratio: 4.251775e-01	ci left: 2.271250e-05	ci right 3.525334e-05	k: 84	n:2950000
Cons ci ratio: 2.021456e-01	ci left: 1.145774e-04	ci right 1.406578e-04	k: 375	n:2950000
KS ci ratio: 5.241792e-02	ci left: 1.842597e-03	ci right 1.942114e-03	k: 5581	n:2950000
SDK1   2950000 perm   4302 sec   (686 perm/sec)   p_kst 1.891864e-03   p_cons 1.271186e-04   p_joint 2.847458e-05

Joint ci ratio: 4.251775e-01	ci left: 2.263577e-05	ci right 3.513424e-05	k: 84	n:2960000
Cons ci ratio: 2.013439e-01	ci left: 1.151526e-04	ci right 1.412472e-04	k: 378	n:2960000
KS ci ratio: 5.232426e-02	ci left: 1.843040e-03	ci right 1.942398e-03	k: 5601	n:2960000
SDK1   2960000 perm   4328 sec   (684 perm/sec)   p_kst 1.892230e-03   p_cons 1.277027e-04   p_joint 2.837838e-05

Joint ci ratio: 4.251775e-01	ci left: 2.255955e-05	ci right 3.501595e-05	k: 84	n:2970000
Cons ci ratio: 2.005517e-01	ci left: 1.157242e-04	ci right 1.418325e-04	k: 381	n:2970000
KS ci ratio: 5.225438e-02	ci left: 1.841819e-03	ci right 1.940974e-03	k: 5616	n:2970000
SDK1   2970000 perm   4356 sec   (682 perm/sec)   p_kst 1.890909e-03   p_cons 1.282828e-04   p_joint 2.828283e-05

Joint ci ratio: 4.251776e-01	ci left: 2.248385e-05	ci right 3.489845e-05	k: 84	n:2980000
Cons ci ratio: 2.005518e-01	ci left: 1.153359e-04	ci right 1.413565e-04	k: 381	n:2980000
KS ci ratio: 5.216623e-02	ci left: 1.841931e-03	ci right 1.940920e-03	k: 5635	n:2980000
SDK1   2980000 perm   4382 sec   (680 perm/sec)   p_kst 1.890940e-03   p_cons 1.278523e-04   p_joint 2.818792e-05

Joint ci ratio: 4.226983e-01	ci left: 2.270741e-05	ci right 3.515166e-05	k: 85	n:2990000
Cons ci ratio: 2.005518e-01	ci left: 1.149501e-04	ci right 1.408838e-04	k: 381	n:2990000
KS ci ratio: 5.210160e-02	ci left: 1.840392e-03	ci right 1.939172e-03	k: 5649	n:2990000
SDK1   2990000 perm   4410 sec   (678 perm/sec)   p_kst 1.889298e-03   p_cons 1.274247e-04   p_joint 2.842809e-05

Joint ci ratio: 4.226983e-01	ci left: 2.263172e-05	ci right 3.503449e-05	k: 85	n:3000000
Cons ci ratio: 2.002898e-01	ci left: 1.148836e-04	ci right 1.407642e-04	k: 382	n:3000000
KS ci ratio: 5.202801e-02	ci left: 1.839521e-03	ci right 1.938111e-03	k: 5665	n:3000000
SDK1   3000000 perm   4436 sec   (676 perm/sec)   p_kst 1.888333e-03   p_cons 1.273333e-04   p_joint 2.833333e-05

Joint ci ratio: 4.202620e-01	ci left: 2.285352e-05	ci right 3.528536e-05	k: 86	n:3010000
Cons ci ratio: 2.000289e-01	ci left: 1.148175e-04	ci right 1.406454e-04	k: 383	n:3010000
KS ci ratio: 5.192269e-02	ci left: 1.840952e-03	ci right 1.939412e-03	k: 5688	n:3010000
SDK1   3010000 perm   4464 sec   (674 perm/sec)   p_kst 1.889701e-03   p_cons 1.272425e-04   p_joint 2.857143e-05

Joint ci ratio: 4.202620e-01	ci left: 2.277784e-05	ci right 3.516852e-05	k: 86	n:3020000
Cons ci ratio: 2.000289e-01	ci left: 1.144373e-04	ci right 1.401797e-04	k: 383	n:3020000
KS ci ratio: 5.183166e-02	ci left: 1.841393e-03	ci right 1.939699e-03	k: 5708	n:3020000
SDK1   3020000 perm   4490 sec   (673 perm/sec)   p_kst 1.890066e-03   p_cons 1.268212e-04   p_joint 2.847682e-05

Joint ci ratio: 4.202620e-01	ci left: 2.270267e-05	ci right 3.505246e-05	k: 86	n:3030000
Cons ci ratio: 1.997690e-01	ci left: 1.143731e-04	ci right 1.400636e-04	k: 384	n:3030000
KS ci ratio: 5.174110e-02	ci left: 1.841831e-03	ci right 1.939983e-03	k: 5728	n:3030000
SDK1   3030000 perm   4518 sec   (671 perm/sec)   p_kst 1.890429e-03   p_cons 1.267327e-04   p_joint 2.838284e-05

Joint ci ratio: 4.178673e-01	ci left: 2.292224e-05	ci right 3.530060e-05	k: 87	n:3040000
Cons ci ratio: 1.995100e-01	ci left: 1.143094e-04	ci right 1.399482e-04	k: 385	n:3040000
KS ci ratio: 5.166001e-02	ci left: 1.841617e-03	ci right 1.939599e-03	k: 5746	n:3040000
SDK1   3040000 perm   4545 sec   (669 perm/sec)   p_kst 1.890132e-03   p_cons 1.266447e-04   p_joint 2.861842e-05

Joint ci ratio: 4.277011e-01	ci left: 2.167515e-05	ci right 3.373464e-05	k: 83	n:3050000
Cons ci ratio: 1.992521e-01	ci left: 1.142461e-04	ci right 1.398336e-04	k: 386	n:3050000
KS ci ratio: 5.156139e-02	ci left: 1.842699e-03	ci right 1.940546e-03	k: 5768	n:3050000
SDK1   3050000 perm   4572 sec   (667 perm/sec)   p_kst 1.891148e-03   p_cons 1.265574e-04   p_joint 2.721311e-05

Joint ci ratio: 4.496492e-01	ci left: 1.927856e-05	ci right 3.072316e-05	k: 75	n:3060000
Cons ci ratio: 1.987392e-01	ci left: 1.144938e-04	ci right 1.400627e-04	k: 388	n:3060000
KS ci ratio: 5.149006e-02	ci left: 1.841838e-03	ci right 1.939501e-03	k: 5784	n:3060000
SDK1   3060000 perm   4599 sec   (665 perm/sec)   p_kst 1.890196e-03   p_cons 1.267974e-04   p_joint 2.450980e-05

Joint ci ratio: 4.496492e-01	ci left: 1.921577e-05	ci right 3.062308e-05	k: 75	n:3070000
Cons ci ratio: 1.984843e-01	ci left: 1.144304e-04	ci right 1.399484e-04	k: 389	n:3070000
KS ci ratio: 5.136583e-02	ci left: 1.844842e-03	ci right 1.942421e-03	k: 5812	n:3070000
SDK1   3070000 perm   4626 sec   (664 perm/sec)   p_kst 1.893160e-03   p_cons 1.267101e-04   p_joint 2.442997e-05

Joint ci ratio: 4.467198e-01	ci left: 1.944140e-05	ci right 3.088475e-05	k: 76	n:3080000
Cons ci ratio: 1.982303e-01	ci left: 1.143674e-04	ci right 1.398348e-04	k: 390	n:3080000
KS ci ratio: 5.125568e-02	ci left: 1.846865e-03	ci right 1.944335e-03	k: 5837	n:3080000
SDK1   3080000 perm   4655 sec   (662 perm/sec)   p_kst 1.895130e-03   p_cons 1.266234e-04   p_joint 2.467532e-05

Joint ci ratio: 4.438469e-01	ci left: 1.966581e-05	ci right 3.114449e-05	k: 77	n:3090000
Cons ci ratio: 1.974741e-01	ci left: 1.149201e-04	ci right 1.404012e-04	k: 393	n:3090000
KS ci ratio: 5.116810e-02	ci left: 1.847278e-03	ci right 1.944598e-03	k: 5857	n:3090000
SDK1   3090000 perm   4683 sec   (660 perm/sec)   p_kst 1.895469e-03   p_cons 1.271845e-04   p_joint 2.491909e-05

Joint ci ratio: 4.410288e-01	ci left: 1.988901e-05	ci right 3.140233e-05	k: 78	n:3100000
Cons ci ratio: 1.974742e-01	ci left: 1.145494e-04	ci right 1.399483e-04	k: 393	n:3100000
KS ci ratio: 5.104617e-02	ci left: 1.850236e-03	ci right 1.947473e-03	k: 5885	n:3100000
SDK1   3100000 perm   4711 sec   (658 perm/sec)   p_kst 1.898387e-03   p_cons 1.267742e-04   p_joint 2.516129e-05

Joint ci ratio: 4.410288e-01	ci left: 1.982505e-05	ci right 3.130136e-05	k: 78	n:3110000
Cons ci ratio: 1.969748e-01	ci left: 1.147924e-04	ci right 1.401731e-04	k: 395	n:3110000
KS ci ratio: 5.099427e-02	ci left: 1.848096e-03	ci right 1.945119e-03	k: 5897	n:3110000
SDK1   3110000 perm   4738 sec   (656 perm/sec)   p_kst 1.896141e-03   p_cons 1.270096e-04   p_joint 2.508039e-05

Joint ci ratio: 4.382636e-01	ci left: 2.004654e-05	ci right 3.155682e-05	k: 79	n:3120000
Cons ci ratio: 1.964793e-01	ci left: 1.150339e-04	ci right 1.403964e-04	k: 397	n:3120000
KS ci ratio: 5.090802e-02	ci left: 1.848501e-03	ci right 1.945376e-03	k: 5917	n:3120000
SDK1   3120000 perm   4766 sec   (655 perm/sec)   p_kst 1.896474e-03   p_cons 1.272436e-04   p_joint 2.532051e-05

Joint ci ratio: 4.355499e-01	ci left: 2.026683e-05	ci right 3.181042e-05	k: 80	n:3130000
Cons ci ratio: 1.964793e-01	ci left: 1.146664e-04	ci right 1.399478e-04	k: 397	n:3130000
KS ci ratio: 5.081364e-02	ci left: 1.849534e-03	ci right 1.946279e-03	k: 5939	n:3130000
SDK1   3130000 perm   4793 sec   (653 perm/sec)   p_kst 1.897444e-03   p_cons 1.268371e-04   p_joint 2.555911e-05

Joint ci ratio: 4.355499e-01	ci left: 2.020229e-05	ci right 3.170911e-05	k: 80	n:3140000
Cons ci ratio: 1.964794e-01	ci left: 1.143012e-04	ci right 1.395021e-04	k: 397	n:3140000
KS ci ratio: 5.075817e-02	ci left: 1.847732e-03	ci right 1.944273e-03	k: 5952	n:3140000
SDK1   3140000 perm   4821 sec   (651 perm/sec)   p_kst 1.895541e-03   p_cons 1.264331e-04   p_joint 2.547771e-05

Joint ci ratio: 4.355499e-01	ci left: 2.013815e-05	ci right 3.160845e-05	k: 80	n:3150000
Cons ci ratio: 1.957430e-01	ci left: 1.148439e-04	ci right 1.400583e-04	k: 400	n:3150000
KS ci ratio: 5.069012e-02	ci left: 1.846881e-03	ci right 1.943245e-03	k: 5968	n:3150000
SDK1   3150000 perm   4848 sec   (650 perm/sec)   p_kst 1.894603e-03   p_cons 1.269841e-04   p_joint 2.539683e-05

Joint ci ratio: 4.355499e-01	ci left: 2.007442e-05	ci right 3.150842e-05	k: 80	n:3160000
Cons ci ratio: 1.952566e-01	ci left: 1.150825e-04	ci right 1.402790e-04	k: 402	n:3160000
KS ci ratio: 5.058848e-02	ci left: 1.848535e-03	ci right 1.944786e-03	k: 5992	n:3160000
SDK1   3160000 perm   4876 sec   (648 perm/sec)   p_kst 1.896203e-03   p_cons 1.272152e-04   p_joint 2.531646e-05

Joint ci ratio: 4.355499e-01	ci left: 2.001110e-05	ci right 3.140903e-05	k: 80	n:3170000
Cons ci ratio: 1.952567e-01	ci left: 1.147194e-04	ci right 1.398364e-04	k: 402	n:3170000
KS ci ratio: 5.051269e-02	ci left: 1.848310e-03	ci right 1.944401e-03	k: 6010	n:3170000
SDK1   3170000 perm   4906 sec   (646 perm/sec)   p_kst 1.895899e-03   p_cons 1.268139e-04   p_joint 2.523659e-05

Joint ci ratio: 4.355499e-01	ci left: 1.994817e-05	ci right 3.131026e-05	k: 80	n:3180000
Cons ci ratio: 1.950149e-01	ci left: 1.146578e-04	ci right 1.397265e-04	k: 403	n:3180000
KS ci ratio: 5.044562e-02	ci left: 1.847466e-03	ci right 1.943382e-03	k: 6026	n:3180000
SDK1   3180000 perm   4935 sec   (644 perm/sec)   p_kst 1.894969e-03   p_cons 1.267296e-04   p_joint 2.515723e-05

Joint ci ratio: 4.355500e-01	ci left: 1.988564e-05	ci right 3.121211e-05	k: 80	n:3190000
Cons ci ratio: 1.950149e-01	ci left: 1.142983e-04	ci right 1.392885e-04	k: 403	n:3190000
KS ci ratio: 5.039135e-02	ci left: 1.845698e-03	ci right 1.941416e-03	k: 6039	n:3190000
SDK1   3190000 perm   4963 sec   (643 perm/sec)   p_kst 1.893103e-03   p_cons 1.263323e-04   p_joint 2.507837e-05

Joint ci ratio: 4.355500e-01	ci left: 1.982349e-05	ci right 3.111457e-05	k: 80	n:3200000
Cons ci ratio: 1.947740e-01	ci left: 1.142384e-04	ci right 1.391810e-04	k: 404	n:3200000
KS ci ratio: 5.032892e-02	ci left: 1.844559e-03	ci right 1.940096e-03	k: 6054	n:3200000
SDK1   3200000 perm   4992 sec   (641 perm/sec)   p_kst 1.891875e-03   p_cons 1.262500e-04   p_joint 2.500000e-05

Joint ci ratio: 4.355500e-01	ci left: 1.976174e-05	ci right 3.101764e-05	k: 80	n:3210000
Cons ci ratio: 1.947740e-01	ci left: 1.138825e-04	ci right 1.387474e-04	k: 404	n:3210000
KS ci ratio: 5.026258e-02	ci left: 1.843734e-03	ci right 1.939099e-03	k: 6070	n:3210000
SDK1   3210000 perm   5020 sec   (639 perm/sec)   p_kst 1.890966e-03   p_cons 1.258567e-04   p_joint 2.492212e-05

Joint ci ratio: 4.355500e-01	ci left: 1.970037e-05	ci right 3.092131e-05	k: 80	n:3220000
Cons ci ratio: 1.945340e-01	ci left: 1.138243e-04	ci right 1.386422e-04	k: 405	n:3220000
KS ci ratio: 5.019650e-02	ci left: 1.842915e-03	ci right 1.938109e-03	k: 6086	n:3220000
SDK1   3220000 perm   5049 sec   (638 perm/sec)   p_kst 1.890062e-03   p_cons 1.257764e-04   p_joint 2.484472e-05

Joint ci ratio: 4.355500e-01	ci left: 1.963937e-05	ci right 3.082558e-05	k: 80	n:3230000
Cons ci ratio: 1.942949e-01	ci left: 1.137664e-04	ci right 1.385376e-04	k: 406	n:3230000
KS ci ratio: 5.014715e-02	ci left: 1.840878e-03	ci right 1.935870e-03	k: 6098	n:3230000
SDK1   3230000 perm   5076 sec   (636 perm/sec)   p_kst 1.887926e-03   p_cons 1.256966e-04   p_joint 2.476780e-05

Joint ci ratio: 4.355500e-01	ci left: 1.957876e-05	ci right 3.073044e-05	k: 80	n:3240000
Cons ci ratio: 1.940567e-01	ci left: 1.137089e-04	ci right 1.384336e-04	k: 407	n:3240000
KS ci ratio: 5.007742e-02	ci left: 1.840377e-03	ci right 1.935208e-03	k: 6115	n:3240000
SDK1   3240000 perm   5105 sec   (635 perm/sec)   p_kst 1.887346e-03   p_cons 1.256173e-04   p_joint 2.469136e-05

Joint ci ratio: 4.355501e-01	ci left: 1.951852e-05	ci right 3.063588e-05	k: 80	n:3250000
Cons ci ratio: 1.938193e-01	ci left: 1.136518e-04	ci right 1.383303e-04	k: 408	n:3250000
KS ci ratio: 4.999165e-02	ci left: 1.841095e-03	ci right 1.935796e-03	k: 6136	n:3250000
SDK1   3250000 perm   5133 sec   (633 perm/sec)   p_kst 1.888000e-03   p_cons 1.255385e-04   p_joint 2.461538e-05

Joint ci ratio: 4.355501e-01	ci left: 1.945864e-05	ci right 3.054191e-05	k: 80	n:3260000
Cons ci ratio: 1.938193e-01	ci left: 1.133032e-04	ci right 1.379060e-04	k: 408	n:3260000
KS ci ratio: 4.991851e-02	ci left: 1.840900e-03	ci right 1.935448e-03	k: 6154	n:3260000
SDK1   3260000 perm   5162 sec   (632 perm/sec)   p_kst 1.887730e-03   p_cons 1.251534e-04   p_joint 2.453988e-05

Joint ci ratio: 4.355501e-01	ci left: 1.939914e-05	ci right 3.044851e-05	k: 80	n:3270000
Cons ci ratio: 1.935828e-01	ci left: 1.132476e-04	ci right 1.378049e-04	k: 409	n:3270000
KS ci ratio: 4.984164e-02	ci left: 1.841009e-03	ci right 1.935412e-03	k: 6173	n:3270000
SDK1   3270000 perm   5191 sec   (630 perm/sec)   p_kst 1.887768e-03   p_cons 1.250765e-04   p_joint 2.446483e-05

Joint ci ratio: 4.131985e-01	ci left: 2.179100e-05	ci right 3.339080e-05	k: 89	n:3280000
Cons ci ratio: 1.935829e-01	ci left: 1.129024e-04	ci right 1.373847e-04	k: 409	n:3280000
KS ci ratio: 4.904824e-02	ci left: 1.895920e-03	ci right 1.991548e-03	k: 6374	n:3280000
SDK1   3280000 perm   5220 sec   (628 perm/sec)   p_kst 1.943293e-03   p_cons 1.246951e-04   p_joint 2.713415e-05

Joint ci ratio: 4.131986e-01	ci left: 2.172477e-05	ci right 3.328931e-05	k: 89	n:3290000
Cons ci ratio: 1.931124e-01	ci left: 1.131377e-04	ci right 1.376044e-04	k: 411	n:3290000
KS ci ratio: 4.897532e-02	ci left: 1.895862e-03	ci right 1.991341e-03	k: 6393	n:3290000
SDK1   3290000 perm   5249 sec   (627 perm/sec)   p_kst 1.943161e-03   p_cons 1.249240e-04   p_joint 2.705167e-05

Joint ci ratio: 4.109219e-01	ci left: 2.193055e-05	ci right 3.352271e-05	k: 90	n:3300000
Cons ci ratio: 1.926454e-01	ci left: 1.133716e-04	ci right 1.378227e-04	k: 413	n:3300000
KS ci ratio: 4.888363e-02	ci left: 1.897300e-03	ci right 1.992668e-03	k: 6417	n:3300000
SDK1   3300000 perm   5278 sec   (625 perm/sec)   p_kst 1.944545e-03   p_cons 1.251515e-04   p_joint 2.727273e-05

Joint ci ratio: 4.109219e-01	ci left: 2.186429e-05	ci right 3.342143e-05	k: 90	n:3310000
Cons ci ratio: 1.921817e-01	ci left: 1.136043e-04	ci right 1.380397e-04	k: 415	n:3310000
KS ci ratio: 4.881523e-02	ci left: 1.896940e-03	ci right 1.992152e-03	k: 6435	n:3310000
SDK1   3310000 perm   5307 sec   (624 perm/sec)   p_kst 1.944109e-03   p_cons 1.253776e-04   p_joint 2.719033e-05

Joint ci ratio: 4.109220e-01	ci left: 2.179844e-05	ci right 3.332076e-05	k: 90	n:3320000
Cons ci ratio: 1.917214e-01	ci left: 1.138355e-04	ci right 1.382552e-04	k: 417	n:3320000
KS ci ratio: 4.872821e-02	ci left: 1.898070e-03	ci right 1.993164e-03	k: 6458	n:3320000
SDK1   3320000 perm   5336 sec   (622 perm/sec)   p_kst 1.945181e-03   p_cons 1.256024e-04   p_joint 2.710843e-05

Joint ci ratio: 4.109220e-01	ci left: 2.173298e-05	ci right 3.322070e-05	k: 90	n:3330000
Cons ci ratio: 1.914925e-01	ci left: 1.137796e-04	ci right 1.381547e-04	k: 418	n:3330000
KS ci ratio: 4.865670e-02	ci left: 1.898006e-03	ci right 1.992954e-03	k: 6477	n:3330000
SDK1   3330000 perm   5365 sec   (621 perm/sec)   p_kst 1.945045e-03   p_cons 1.255255e-04   p_joint 2.702703e-05

Joint ci ratio: 4.086826e-01	ci left: 2.193644e-05	ci right 3.345134e-05	k: 91	n:3340000
Cons ci ratio: 1.908105e-01	ci left: 1.142941e-04	ci right 1.386822e-04	k: 421	n:3340000
KS ci ratio: 4.858176e-02	ci left: 1.898238e-03	ci right 1.993047e-03	k: 6497	n:3340000
SDK1   3340000 perm   5394 sec   (619 perm/sec)   p_kst 1.945210e-03   p_cons 1.260479e-04   p_joint 2.724551e-05

Joint ci ratio: 4.086826e-01	ci left: 2.187096e-05	ci right 3.335149e-05	k: 91	n:3350000
Cons ci ratio: 1.905849e-01	ci left: 1.142372e-04	ci right 1.385810e-04	k: 422	n:3350000
KS ci ratio: 4.850344e-02	ci left: 1.898765e-03	ci right 1.993443e-03	k: 6518	n:3350000
SDK1   3350000 perm   5424 sec   (618 perm/sec)   p_kst 1.945672e-03   p_cons 1.259701e-04   p_joint 2.716418e-05

Joint ci ratio: 4.086826e-01	ci left: 2.180586e-05	ci right 3.325223e-05	k: 91	n:3360000
Cons ci ratio: 1.899126e-01	ci left: 1.147476e-04	ci right 1.391038e-04	k: 425	n:3360000
KS ci ratio: 4.842920e-02	ci left: 1.898994e-03	ci right 1.993534e-03	k: 6538	n:3360000
SDK1   3360000 perm   5454 sec   (616 perm/sec)   p_kst 1.945833e-03   p_cons 1.264881e-04   p_joint 2.708333e-05

Joint ci ratio: 4.064794e-01	ci left: 2.200747e-05	ci right 3.348056e-05	k: 92	n:3370000
Cons ci ratio: 1.896900e-01	ci left: 1.146897e-04	ci right 1.390019e-04	k: 426	n:3370000
KS ci ratio: 4.833316e-02	ci left: 1.900981e-03	ci right 1.995427e-03	k: 6564	n:3370000
SDK1   3370000 perm   5483 sec   (615 perm/sec)   p_kst 1.947774e-03   p_cons 1.264095e-04   p_joint 2.729970e-05

Joint ci ratio: 4.109221e-01	ci left: 2.141148e-05	ci right 3.272927e-05	k: 90	n:3380000
Cons ci ratio: 1.894683e-01	ci left: 1.146322e-04	ci right 1.389005e-04	k: 427	n:3380000
KS ci ratio: 4.826338e-02	ci left: 1.900910e-03	ci right 1.995213e-03	k: 6583	n:3380000
SDK1   3380000 perm   5512 sec   (613 perm/sec)   p_kst 1.947633e-03   p_cons 1.263314e-04   p_joint 2.662722e-05

Joint ci ratio: 4.109221e-01	ci left: 2.134832e-05	ci right 3.263273e-05	k: 90	n:3390000
Cons ci ratio: 1.892474e-01	ci left: 1.145751e-04	ci right 1.387997e-04	k: 428	n:3390000
KS ci ratio: 4.819023e-02	ci left: 1.901131e-03	ci right 1.995298e-03	k: 6603	n:3390000
SDK1   3390000 perm   5541 sec   (612 perm/sec)   p_kst 1.947788e-03   p_cons 1.262537e-04   p_joint 2.654867e-05

Joint ci ratio: 4.064794e-01	ci left: 2.181328e-05	ci right 3.318514e-05	k: 92	n:3400000
Cons ci ratio: 1.885891e-01	ci left: 1.150787e-04	ci right 1.393155e-04	k: 431	n:3400000
KS ci ratio: 4.811379e-02	ci left: 1.901642e-03	ci right 1.995680e-03	k: 6624	n:3400000
SDK1   3400000 perm   5571 sec   (610 perm/sec)   p_kst 1.948235e-03   p_cons 1.267647e-04   p_joint 2.705882e-05

Joint ci ratio: 4.064795e-01	ci left: 2.174932e-05	ci right 3.308783e-05	k: 92	n:3410000
Cons ci ratio: 1.883712e-01	ci left: 1.150206e-04	ci right 1.392141e-04	k: 432	n:3410000
KS ci ratio: 4.805582e-02	ci left: 1.900701e-03	ci right 1.994576e-03	k: 6640	n:3410000
SDK1   3410000 perm   5601 sec   (609 perm/sec)   p_kst 1.947214e-03   p_cons 1.266862e-04   p_joint 2.697947e-05

Joint ci ratio: 4.064795e-01	ci left: 2.168572e-05	ci right 3.299108e-05	k: 92	n:3420000
Cons ci ratio: 1.883712e-01	ci left: 1.146843e-04	ci right 1.388070e-04	k: 432	n:3420000
KS ci ratio: 4.796558e-02	ci left: 1.902365e-03	ci right 1.996142e-03	k: 6665	n:3420000
SDK1   3420000 perm   5631 sec   (607 perm/sec)   p_kst 1.948830e-03   p_cons 1.263158e-04   p_joint 2.690058e-05

Joint ci ratio: 4.064795e-01	ci left: 2.162250e-05	ci right 3.289490e-05	k: 92	n:3430000
Cons ci ratio: 1.881541e-01	ci left: 1.146278e-04	ci right 1.387076e-04	k: 433	n:3430000
KS ci ratio: 4.791892e-02	ci left: 1.900564e-03	ci right 1.994158e-03	k: 6678	n:3430000
SDK1   3430000 perm   5660 sec   (606 perm/sec)   p_kst 1.946939e-03   p_cons 1.262391e-04   p_joint 2.682216e-05

Joint ci ratio: 4.064795e-01	ci left: 2.155964e-05	ci right 3.279927e-05	k: 92	n:3440000
Cons ci ratio: 1.881541e-01	ci left: 1.142946e-04	ci right 1.383044e-04	k: 433	n:3440000
KS ci ratio: 4.786882e-02	ci left: 1.899060e-03	ci right 1.992479e-03	k: 6692	n:3440000
SDK1   3440000 perm   5690 sec   (605 perm/sec)   p_kst 1.945349e-03   p_cons 1.258721e-04   p_joint 2.674419e-05

Joint ci ratio: 4.064795e-01	ci left: 2.149715e-05	ci right 3.270420e-05	k: 92	n:3450000
Cons ci ratio: 1.881542e-01	ci left: 1.139633e-04	ci right 1.379035e-04	k: 433	n:3450000
KS ci ratio: 4.781530e-02	ci left: 1.897851e-03	ci right 1.991104e-03	k: 6707	n:3450000
SDK1   3450000 perm   5721 sec   (603 perm/sec)   p_kst 1.944058e-03   p_cons 1.255072e-04   p_joint 2.666667e-05

Joint ci ratio: 4.064795e-01	ci left: 2.143502e-05	ci right 3.260968e-05	k: 92	n:3460000
Cons ci ratio: 1.881542e-01	ci left: 1.136339e-04	ci right 1.375049e-04	k: 433	n:3460000
KS ci ratio: 4.776552e-02	ci left: 1.896364e-03	ci right 1.989444e-03	k: 6721	n:3460000
SDK1   3460000 perm   5751 sec   (602 perm/sec)   p_kst 1.942486e-03   p_cons 1.251445e-04   p_joint 2.658960e-05

Joint ci ratio: 4.064796e-01	ci left: 2.137325e-05	ci right 3.251570e-05	k: 92	n:3470000
Cons ci ratio: 1.879378e-01	ci left: 1.135810e-04	ci right 1.374104e-04	k: 434	n:3470000
KS ci ratio: 4.772299e-02	ci left: 1.894316e-03	ci right 1.987210e-03	k: 6733	n:3470000
SDK1   3470000 perm   5781 sec   (600 perm/sec)   p_kst 1.940346e-03   p_cons 1.250720e-04   p_joint 2.651297e-05

Joint ci ratio: 4.043116e-01	ci left: 2.156988e-05	ci right 3.273878e-05	k: 93	n:3480000
Cons ci ratio: 1.870796e-01	ci left: 1.143501e-04	ci right 1.382189e-04	k: 438	n:3480000
KS ci ratio: 4.765581e-02	ci left: 1.894267e-03	ci right 1.987025e-03	k: 6752	n:3480000
SDK1   3480000 perm   5813 sec   (599 perm/sec)   p_kst 1.940230e-03   p_cons 1.258621e-04   p_joint 2.672414e-05

Joint ci ratio: 4.043116e-01	ci left: 2.150808e-05	ci right 3.264497e-05	k: 93	n:3490000
Cons ci ratio: 1.868669e-01	ci left: 1.142956e-04	ci right 1.381227e-04	k: 439	n:3490000
KS ci ratio: 4.757484e-02	ci left: 1.895351e-03	ci right 1.988000e-03	k: 6775	n:3490000
SDK1   3490000 perm   5843 sec   (597 perm/sec)   p_kst 1.941261e-03   p_cons 1.257880e-04   p_joint 2.664756e-05

Joint ci ratio: 4.277019e-01	ci left: 1.888834e-05	ci right 2.939734e-05	k: 83	n:3500000
Cons ci ratio: 1.866549e-01	ci left: 1.142414e-04	ci right 1.380272e-04	k: 440	n:3500000
KS ci ratio: 4.608600e-02	ci left: 2.015311e-03	ci right 2.110659e-03	k: 7219	n:3500000
SDK1   3500000 perm   5874 sec   (596 perm/sec)   p_kst 2.062571e-03   p_cons 1.257143e-04   p_joint 2.371429e-05

Joint ci ratio: 4.277019e-01	ci left: 1.883453e-05	ci right 2.931359e-05	k: 83	n:3510000
Cons ci ratio: 1.862330e-01	ci left: 1.144591e-04	ci right 1.382303e-04	k: 442	n:3510000
KS ci ratio: 4.601912e-02	ci left: 2.015483e-03	ci right 2.110698e-03	k: 7240	n:3510000
SDK1   3510000 perm   5906 sec   (594 perm/sec)   p_kst 2.062678e-03   p_cons 1.259259e-04   p_joint 2.364672e-05

Joint ci ratio: 4.277019e-01	ci left: 1.878102e-05	ci right 2.923031e-05	k: 83	n:3520000
Cons ci ratio: 1.862331e-01	ci left: 1.141340e-04	ci right 1.378376e-04	k: 442	n:3520000
KS ci ratio: 4.592402e-02	ci left: 2.018182e-03	ci right 2.113322e-03	k: 7270	n:3520000
SDK1   3520000 perm   5937 sec   (593 perm/sec)   p_kst 2.065341e-03   p_cons 1.255682e-04   p_joint 2.357955e-05

Joint ci ratio: 4.277019e-01	ci left: 1.872781e-05	ci right 2.914751e-05	k: 83	n:3530000
Cons ci ratio: 1.860232e-01	ci left: 1.140807e-04	ci right 1.377436e-04	k: 443	n:3530000
KS ci ratio: 4.587361e-02	ci left: 2.016945e-03	ci right 2.111920e-03	k: 7286	n:3530000
SDK1   3530000 perm   5968 sec   (591 perm/sec)   p_kst 2.064023e-03   p_cons 1.254958e-04   p_joint 2.351275e-05

Joint ci ratio: 4.277019e-01	ci left: 1.867491e-05	ci right 2.906517e-05	k: 83	n:3540000
Cons ci ratio: 1.858141e-01	ci left: 1.140278e-04	ci right 1.376501e-04	k: 444	n:3540000
KS ci ratio: 4.581707e-02	ci left: 2.016274e-03	ci right 2.111097e-03	k: 7304	n:3540000
SDK1   3540000 perm   5999 sec   (590 perm/sec)   p_kst 2.063277e-03   p_cons 1.254237e-04   p_joint 2.344633e-05

Joint ci ratio: 4.277019e-01	ci left: 1.862231e-05	ci right 2.898330e-05	k: 83	n:3550000
Cons ci ratio: 1.853979e-01	ci left: 1.142438e-04	ci right 1.378519e-04	k: 446	n:3550000
KS ci ratio: 4.577014e-02	ci left: 2.014772e-03	ci right 2.109424e-03	k: 7319	n:3550000
SDK1   3550000 perm   6030 sec   (589 perm/sec)   p_kst 2.061690e-03   p_cons 1.256338e-04   p_joint 2.338028e-05

Joint ci ratio: 4.277020e-01	ci left: 1.857000e-05	ci right 2.890188e-05	k: 83	n:3560000
Cons ci ratio: 1.853980e-01	ci left: 1.139229e-04	ci right 1.374647e-04	k: 446	n:3560000
KS ci ratio: 4.568592e-02	ci left: 2.016610e-03	ci right 2.111169e-03	k: 7346	n:3560000
SDK1   3560000 perm   6061 sec   (587 perm/sec)   p_kst 2.063483e-03   p_cons 1.252809e-04   p_joint 2.331461e-05

Joint ci ratio: 4.277020e-01	ci left: 1.851798e-05	ci right 2.882092e-05	k: 83	n:3570000
Cons ci ratio: 1.849846e-01	ci left: 1.141380e-04	ci right 1.376658e-04	k: 448	n:3570000
KS ci ratio: 4.563008e-02	ci left: 2.015945e-03	ci right 2.110355e-03	k: 7364	n:3570000
SDK1   3570000 perm   6092 sec   (586 perm/sec)   p_kst 2.062745e-03   p_cons 1.254902e-04   p_joint 2.324930e-05

Joint ci ratio: 4.251786e-01	ci left: 1.871560e-05	ci right 2.904956e-05	k: 84	n:3580000
Cons ci ratio: 1.841660e-01	ci left: 1.148849e-04	ci right 1.384501e-04	k: 452	n:3580000
KS ci ratio: 4.557443e-02	ci left: 2.015285e-03	ci right 2.109546e-03	k: 7382	n:3580000
SDK1   3580000 perm   6124 sec   (585 perm/sec)   p_kst 2.062011e-03   p_cons 1.262570e-04   p_joint 2.346369e-05

Joint ci ratio: 4.251786e-01	ci left: 1.866346e-05	ci right 2.896864e-05	k: 84	n:3590000
Cons ci ratio: 1.841660e-01	ci left: 1.145649e-04	ci right 1.380645e-04	k: 452	n:3590000
KS ci ratio: 4.550052e-02	ci left: 2.016280e-03	ci right 2.110431e-03	k: 7406	n:3590000
SDK1   3590000 perm   6155 sec   (583 perm/sec)   p_kst 2.062953e-03   p_cons 1.259053e-04   p_joint 2.339833e-05

Joint ci ratio: 4.251786e-01	ci left: 1.861162e-05	ci right 2.888817e-05	k: 84	n:3600000
Cons ci ratio: 1.837608e-01	ci left: 1.147766e-04	ci right 1.382621e-04	k: 454	n:3600000
KS ci ratio: 4.546683e-02	ci left: 2.013700e-03	ci right 2.107659e-03	k: 7417	n:3600000
SDK1   3600000 perm   6187 sec   (582 perm/sec)   p_kst 2.060278e-03   p_cons 1.261111e-04   p_joint 2.333333e-05

Joint ci ratio: 4.251786e-01	ci left: 1.856007e-05	ci right 2.880815e-05	k: 84	n:3610000
Cons ci ratio: 1.837608e-01	ci left: 1.144587e-04	ci right 1.378791e-04	k: 454	n:3610000
KS ci ratio: 4.539649e-02	ci left: 2.014421e-03	ci right 2.108264e-03	k: 7440	n:3610000
SDK1   3610000 perm   6219 sec   (581 perm/sec)   p_kst 2.060942e-03   p_cons 1.257618e-04   p_joint 2.326870e-05

Joint ci ratio: 4.251786e-01	ci left: 1.850879e-05	ci right 2.872857e-05	k: 84	n:3620000
Cons ci ratio: 1.837609e-01	ci left: 1.141425e-04	ci right 1.374982e-04	k: 454	n:3620000
KS ci ratio: 4.534475e-02	ci left: 2.013499e-03	ci right 2.107190e-03	k: 7457	n:3620000
SDK1   3620000 perm   6250 sec   (579 perm/sec)   p_kst 2.059945e-03   p_cons 1.254144e-04   p_joint 2.320442e-05

Joint ci ratio: 4.251787e-01	ci left: 1.845781e-05	ci right 2.864943e-05	k: 84	n:3630000
Cons ci ratio: 1.837609e-01	ci left: 1.138281e-04	ci right 1.371194e-04	k: 454	n:3630000
KS ci ratio: 4.528407e-02	ci left: 2.013400e-03	ci right 2.106957e-03	k: 7477	n:3630000
SDK1   3630000 perm   6282 sec   (578 perm/sec)   p_kst 2.059780e-03   p_cons 1.250689e-04   p_joint 2.314050e-05

Joint ci ratio: 4.226994e-01	ci left: 1.865251e-05	ci right 2.887460e-05	k: 85	n:3640000
Cons ci ratio: 1.835593e-01	ci left: 1.137774e-04	ci right 1.370300e-04	k: 455	n:3640000
KS ci ratio: 4.524481e-02	ci left: 2.011399e-03	ci right 2.104780e-03	k: 7490	n:3640000
SDK1   3640000 perm   6313 sec   (577 perm/sec)   p_kst 2.057692e-03   p_cons 1.250000e-04   p_joint 2.335165e-05

Joint ci ratio: 4.226994e-01	ci left: 1.860141e-05	ci right 2.879549e-05	k: 85	n:3650000
Cons ci ratio: 1.831581e-01	ci left: 1.139885e-04	ci right 1.372277e-04	k: 457	n:3650000
KS ci ratio: 4.517550e-02	ci left: 2.012119e-03	ci right 2.105386e-03	k: 7513	n:3650000
SDK1   3650000 perm   6345 sec   (575 perm/sec)   p_kst 2.058356e-03   p_cons 1.252055e-04   p_joint 2.328767e-05

Joint ci ratio: 4.226994e-01	ci left: 1.855058e-05	ci right 2.871681e-05	k: 85	n:3660000
Cons ci ratio: 1.827594e-01	ci left: 1.141985e-04	ci right 1.374242e-04	k: 459	n:3660000
KS ci ratio: 4.513351e-02	ci left: 2.010403e-03	ci right 2.103502e-03	k: 7527	n:3660000
SDK1   3660000 perm   6377 sec   (574 perm/sec)   p_kst 2.056557e-03   p_cons 1.254098e-04   p_joint 2.322404e-05

Joint ci ratio: 4.178683e-01	ci left: 1.898735e-05	ci right 2.924084e-05	k: 87	n:3670000
Cons ci ratio: 1.827595e-01	ci left: 1.138873e-04	ci right 1.370497e-04	k: 459	n:3670000
KS ci ratio: 4.505574e-02	ci left: 2.011930e-03	ci right 2.104935e-03	k: 7553	n:3670000
SDK1   3670000 perm   6408 sec   (573 perm/sec)   p_kst 2.058038e-03   p_cons 1.250681e-04   p_joint 2.370572e-05

Joint ci ratio: 4.178684e-01	ci left: 1.893576e-05	ci right 2.916138e-05	k: 87	n:3680000
Cons ci ratio: 1.827595e-01	ci left: 1.135778e-04	ci right 1.366773e-04	k: 459	n:3680000
KS ci ratio: 4.501110e-02	ci left: 2.010493e-03	ci right 2.103337e-03	k: 7568	n:3680000
SDK1   3680000 perm   6441 sec   (571 perm/sec)   p_kst 2.056522e-03   p_cons 1.247283e-04   p_joint 2.364130e-05

Joint ci ratio: 4.178684e-01	ci left: 1.888444e-05	ci right 2.908235e-05	k: 87	n:3690000
Cons ci ratio: 1.823635e-01	ci left: 1.137873e-04	ci right 1.368737e-04	k: 461	n:3690000
KS ci ratio: 4.496660e-02	ci left: 2.009063e-03	ci right 2.101748e-03	k: 7583	n:3690000
SDK1   3690000 perm   6473 sec   (570 perm/sec)   p_kst 2.055014e-03   p_cons 1.249322e-04   p_joint 2.357724e-05

Joint ci ratio: 4.178684e-01	ci left: 1.883340e-05	ci right 2.900375e-05	k: 87	n:3700000
Cons ci ratio: 1.823635e-01	ci left: 1.134798e-04	ci right 1.365037e-04	k: 461	n:3700000
KS ci ratio: 4.490743e-02	ci left: 2.008978e-03	ci right 2.101534e-03	k: 7603	n:3700000
SDK1   3700000 perm   6506 sec   (569 perm/sec)   p_kst 2.054865e-03   p_cons 1.245946e-04   p_joint 2.351351e-05

Joint ci ratio: 4.178684e-01	ci left: 1.878264e-05	ci right 2.892558e-05	k: 87	n:3710000
Cons ci ratio: 1.819700e-01	ci left: 1.136884e-04	ci right 1.366994e-04	k: 463	n:3710000
KS ci ratio: 4.485439e-02	ci left: 2.008361e-03	ci right 2.100775e-03	k: 7621	n:3710000
SDK1   3710000 perm   6538 sec   (567 perm/sec)   p_kst 2.054178e-03   p_cons 1.247978e-04   p_joint 2.345013e-05

Joint ci ratio: 4.382646e-01	ci left: 1.681322e-05	ci right 2.646702e-05	k: 79	n:3720000
Cons ci ratio: 1.817743e-01	ci left: 1.136393e-04	ci right 1.366130e-04	k: 464	n:3720000
KS ci ratio: 4.478685e-02	ci left: 2.009075e-03	ci right 2.101380e-03	k: 7644	n:3720000
SDK1   3720000 perm   6570 sec   (566 perm/sec)   p_kst 2.054839e-03   p_cons 1.247312e-04   p_joint 2.123656e-05

Joint ci ratio: 4.382646e-01	ci left: 1.676814e-05	ci right 2.639606e-05	k: 79	n:3730000
Cons ci ratio: 1.815791e-01	ci left: 1.135906e-04	ci right 1.365270e-04	k: 465	n:3730000
KS ci ratio: 4.472254e-02	ci left: 2.009521e-03	ci right 2.101710e-03	k: 7666	n:3730000
SDK1   3730000 perm   6603 sec   (565 perm/sec)   p_kst 2.055228e-03   p_cons 1.246649e-04   p_joint 2.117962e-05

Joint ci ratio: 4.382646e-01	ci left: 1.672331e-05	ci right 2.632549e-05	k: 79	n:3740000
Cons ci ratio: 1.811907e-01	ci left: 1.137973e-04	ci right 1.367210e-04	k: 467	n:3740000
KS ci ratio: 4.467306e-02	ci left: 2.008643e-03	ci right 2.100687e-03	k: 7683	n:3740000
SDK1   3740000 perm   6635 sec   (564 perm/sec)   p_kst 2.054278e-03   p_cons 1.248663e-04   p_joint 2.112299e-05

Joint ci ratio: 4.355508e-01	ci left: 1.691604e-05	ci right 2.655111e-05	k: 80	n:3750000
Cons ci ratio: 1.800402e-01	ci left: 1.150216e-04	ci right 1.380287e-04	k: 473	n:3750000
KS ci ratio: 4.460634e-02	ci left: 2.009351e-03	ci right 2.101287e-03	k: 7706	n:3750000
SDK1   3750000 perm   6667 sec   (562 perm/sec)   p_kst 2.054933e-03   p_cons 1.261333e-04   p_joint 2.133333e-05

Joint ci ratio: 4.355508e-01	ci left: 1.687105e-05	ci right 2.648050e-05	k: 80	n:3760000
Cons ci ratio: 1.792852e-01	ci left: 1.157316e-04	ci right 1.387732e-04	k: 477	n:3760000
KS ci ratio: 4.455725e-02	ci left: 2.008478e-03	ci right 2.100270e-03	k: 7723	n:3760000
SDK1   3760000 perm   6700 sec   (561 perm/sec)   p_kst 2.053989e-03   p_cons 1.268617e-04   p_joint 2.127660e-05

Joint ci ratio: 4.355508e-01	ci left: 1.682630e-05	ci right 2.641026e-05	k: 80	n:3770000
Cons ci ratio: 1.789113e-01	ci left: 1.159314e-04	ci right 1.389593e-04	k: 479	n:3770000
KS ci ratio: 4.449967e-02	ci left: 2.008396e-03	ci right 2.100063e-03	k: 7743	n:3770000
SDK1   3770000 perm   6733 sec   (560 perm/sec)   p_kst 2.053846e-03   p_cons 1.270557e-04   p_joint 2.122016e-05

Joint ci ratio: 4.328868e-01	ci left: 1.701741e-05	ci right 2.663369e-05	k: 81	n:3780000
Cons ci ratio: 1.785397e-01	ci left: 1.161301e-04	ci right 1.391445e-04	k: 481	n:3780000
KS ci ratio: 4.444233e-02	ci left: 2.008315e-03	ci right 2.099857e-03	k: 7763	n:3780000
SDK1   3780000 perm   6765 sec   (559 perm/sec)   p_kst 2.053704e-03   p_cons 1.272487e-04   p_joint 2.142857e-05

Joint ci ratio: 4.328868e-01	ci left: 1.697251e-05	ci right 2.656342e-05	k: 81	n:3790000
Cons ci ratio: 1.783548e-01	ci left: 1.160758e-04	ci right 1.390530e-04	k: 482	n:3790000
KS ci ratio: 4.439949e-02	ci left: 2.006930e-03	ci right 2.098319e-03	k: 7778	n:3790000
SDK1   3790000 perm   6798 sec   (558 perm/sec)   p_kst 2.052243e-03   p_cons 1.271768e-04   p_joint 2.137203e-05

Joint ci ratio: 4.302711e-01	ci left: 1.716241e-05	ci right 2.678509e-05	k: 82	n:3800000
Cons ci ratio: 1.774386e-01	ci left: 1.170275e-04	ci right 1.400613e-04	k: 487	n:3800000
KS ci ratio: 4.433968e-02	ci left: 2.007114e-03	ci right 2.098384e-03	k: 7799	n:3800000
SDK1   3800000 perm   6831 sec   (556 perm/sec)   p_kst 2.052368e-03   p_cons 1.281579e-04   p_joint 2.157895e-05

Joint ci ratio: 4.302712e-01	ci left: 1.711737e-05	ci right 2.671479e-05	k: 82	n:3810000
Cons ci ratio: 1.774387e-01	ci left: 1.167204e-04	ci right 1.396937e-04	k: 487	n:3810000
KS ci ratio: 4.430282e-02	ci left: 2.005220e-03	ci right 2.096327e-03	k: 7812	n:3810000
SDK1   3810000 perm   6864 sec   (555 perm/sec)   p_kst 2.050394e-03   p_cons 1.278215e-04   p_joint 2.152231e-05

Joint ci ratio: 4.302712e-01	ci left: 1.707256e-05	ci right 2.664486e-05	k: 82	n:3820000
Cons ci ratio: 1.774387e-01	ci left: 1.164148e-04	ci right 1.393280e-04	k: 487	n:3820000
KS ci ratio: 4.422643e-02	ci left: 2.006961e-03	ci right 2.097985e-03	k: 7839	n:3820000
SDK1   3820000 perm   6898 sec   (554 perm/sec)   p_kst 2.052094e-03   p_cons 1.274869e-04   p_joint 2.146597e-05

Joint ci ratio: 4.302712e-01	ci left: 1.702798e-05	ci right 2.657529e-05	k: 82	n:3830000
Cons ci ratio: 1.774387e-01	ci left: 1.161109e-04	ci right 1.389643e-04	k: 487	n:3830000
KS ci ratio: 4.417013e-02	ci left: 2.006885e-03	ci right 2.097787e-03	k: 7859	n:3830000
SDK1   3830000 perm   6931 sec   (553 perm/sec)   p_kst 2.051958e-03   p_cons 1.271540e-04   p_joint 2.140992e-05

Joint ci ratio: 4.302712e-01	ci left: 1.698364e-05	ci right 2.650608e-05	k: 82	n:3840000
Cons ci ratio: 1.772572e-01	ci left: 1.160573e-04	ci right 1.388743e-04	k: 488	n:3840000
KS ci ratio: 4.412246e-02	ci left: 2.006037e-03	ci right 2.096800e-03	k: 7876	n:3840000
SDK1   3840000 perm   6964 sec   (551 perm/sec)   p_kst 2.051042e-03   p_cons 1.270833e-04   p_joint 2.135417e-05

Joint ci ratio: 4.277023e-01	ci left: 1.717121e-05	ci right 2.672486e-05	k: 83	n:3850000
Cons ci ratio: 1.767159e-01	ci left: 1.165006e-04	ci right 1.393273e-04	k: 491	n:3850000
KS ci ratio: 4.404979e-02	ci left: 2.007505e-03	ci right 2.098181e-03	k: 7902	n:3850000
SDK1   3850000 perm   6997 sec   (550 perm/sec)   p_kst 2.052468e-03   p_cons 1.275325e-04   p_joint 2.155844e-05

Joint ci ratio: 4.277024e-01	ci left: 1.712673e-05	ci right 2.665563e-05	k: 83	n:3860000
Cons ci ratio: 1.767160e-01	ci left: 1.161988e-04	ci right 1.389664e-04	k: 491	n:3860000
KS ci ratio: 4.401086e-02	ci left: 2.005891e-03	ci right 2.096413e-03	k: 7916	n:3860000
SDK1   3860000 perm   7030 sec   (549 perm/sec)   p_kst 2.050777e-03   p_cons 1.272021e-04   p_joint 2.150259e-05

Joint ci ratio: 4.277024e-01	ci left: 1.708247e-05	ci right 2.658675e-05	k: 83	n:3870000
Cons ci ratio: 1.767160e-01	ci left: 1.158985e-04	ci right 1.386073e-04	k: 491	n:3870000
KS ci ratio: 4.396370e-02	ci left: 2.005053e-03	ci right 2.095437e-03	k: 7933	n:3870000
SDK1   3870000 perm   7064 sec   (548 perm/sec)   p_kst 2.049871e-03   p_cons 1.268734e-04   p_joint 2.144703e-05

Joint ci ratio: 4.277024e-01	ci left: 1.703845e-05	ci right 2.651823e-05	k: 83	n:3880000
Cons ci ratio: 1.763579e-01	ci left: 1.160925e-04	ci right 1.387883e-04	k: 493	n:3880000
KS ci ratio: 4.390563e-02	ci left: 2.005238e-03	ci right 2.095508e-03	k: 7954	n:3880000
SDK1   3880000 perm   7098 sec   (547 perm/sec)   p_kst 2.050000e-03   p_cons 1.270619e-04   p_joint 2.139175e-05

Joint ci ratio: 4.251790e-01	ci left: 1.722412e-05	ci right 2.673456e-05	k: 84	n:3890000
Cons ci ratio: 1.763579e-01	ci left: 1.157941e-04	ci right 1.384315e-04	k: 493	n:3890000
KS ci ratio: 4.382303e-02	ci left: 2.007711e-03	ci right 2.097918e-03	k: 7984	n:3890000
SDK1   3890000 perm   7132 sec   (545 perm/sec)   p_kst 2.052442e-03   p_cons 1.267352e-04   p_joint 2.159383e-05

Joint ci ratio: 4.226998e-01	ci left: 1.740901e-05	ci right 2.694963e-05	k: 85	n:3900000
Cons ci ratio: 1.760020e-01	ci left: 1.159874e-04	ci right 1.386120e-04	k: 495	n:3900000
KS ci ratio: 4.376003e-02	ci left: 2.008395e-03	ci right 2.098500e-03	k: 8007	n:3900000
SDK1   3900000 perm   7166 sec   (544 perm/sec)   p_kst 2.053077e-03   p_cons 1.269231e-04   p_joint 2.179487e-05

Joint ci ratio: 4.226998e-01	ci left: 1.736448e-05	ci right 2.688070e-05	k: 85	n:3910000
Cons ci ratio: 1.760020e-01	ci left: 1.156907e-04	ci right 1.382574e-04	k: 495	n:3910000
KS ci ratio: 4.371368e-02	ci left: 2.007559e-03	ci right 2.097529e-03	k: 8024	n:3910000
SDK1   3910000 perm   7199 sec   (543 perm/sec)   p_kst 2.052174e-03   p_cons 1.265985e-04   p_joint 2.173913e-05

Joint ci ratio: 4.226998e-01	ci left: 1.732018e-05	ci right 2.681213e-05	k: 85	n:3920000
Cons ci ratio: 1.758249e-01	ci left: 1.156395e-04	ci right 1.381711e-04	k: 496	n:3920000
KS ci ratio: 4.364572e-02	ci left: 2.008746e-03	ci right 2.098625e-03	k: 8049	n:3920000
SDK1   3920000 perm   7233 sec   (542 perm/sec)   p_kst 2.053316e-03   p_cons 1.265306e-04   p_joint 2.168367e-05

Joint ci ratio: 4.226998e-01	ci left: 1.727611e-05	ci right 2.674391e-05	k: 85	n:3930000
Cons ci ratio: 1.751215e-01	ci left: 1.163183e-04	ci right 1.388820e-04	k: 500	n:3930000
KS ci ratio: 4.360515e-02	ci left: 2.007410e-03	ci right 2.097143e-03	k: 8064	n:3930000
SDK1   3930000 perm   7266 sec   (541 perm/sec)   p_kst 2.051908e-03   p_cons 1.272265e-04   p_joint 2.162850e-05

Joint ci ratio: 4.226998e-01	ci left: 1.723226e-05	ci right 2.667603e-05	k: 85	n:3940000
Cons ci ratio: 1.747730e-01	ci left: 1.165085e-04	ci right 1.390593e-04	k: 502	n:3940000
KS ci ratio: 4.355928e-02	ci left: 2.006582e-03	ci right 2.096183e-03	k: 8081	n:3940000
SDK1   3940000 perm   7300 sec   (540 perm/sec)   p_kst 2.051015e-03   p_cons 1.274112e-04   p_joint 2.157360e-05

Joint ci ratio: 4.226998e-01	ci left: 1.718864e-05	ci right 2.660849e-05	k: 85	n:3950000
Cons ci ratio: 1.745995e-01	ci left: 1.164556e-04	ci right 1.389715e-04	k: 503	n:3950000
KS ci ratio: 4.350549e-02	ci left: 2.006511e-03	ci right 2.095994e-03	k: 8101	n:3950000
SDK1   3950000 perm   7334 sec   (539 perm/sec)   p_kst 2.050886e-03   p_cons 1.273418e-04   p_joint 2.151899e-05

Joint ci ratio: 4.226998e-01	ci left: 1.714523e-05	ci right 2.654130e-05	k: 85	n:3960000
Cons ci ratio: 1.745995e-01	ci left: 1.161615e-04	ci right 1.386205e-04	k: 503	n:3960000
KS ci ratio: 4.345189e-02	ci left: 2.006439e-03	ci right 2.095807e-03	k: 8121	n:3960000
SDK1   3960000 perm   7368 sec   (537 perm/sec)   p_kst 2.050758e-03   p_cons 1.270202e-04   p_joint 2.146465e-05

Joint ci ratio: 4.226998e-01	ci left: 1.710205e-05	ci right 2.647445e-05	k: 85	n:3970000
Cons ci ratio: 1.745996e-01	ci left: 1.158689e-04	ci right 1.382714e-04	k: 503	n:3970000
KS ci ratio: 4.340651e-02	ci left: 2.005621e-03	ci right 2.094856e-03	k: 8138	n:3970000
SDK1   3970000 perm   7402 sec   (536 perm/sec)   p_kst 2.049874e-03   p_cons 1.267003e-04   p_joint 2.141058e-05

Joint ci ratio: 4.251791e-01	ci left: 1.683463e-05	ci right 2.613001e-05	k: 84	n:3980000
Cons ci ratio: 1.739108e-01	ci left: 1.165390e-04	ci right 1.389727e-04	k: 507	n:3980000
KS ci ratio: 4.333997e-02	ci left: 2.006795e-03	ci right 2.095942e-03	k: 8163	n:3980000
SDK1   3980000 perm   7436 sec   (535 perm/sec)   p_kst 2.051005e-03   p_cons 1.273869e-04   p_joint 2.110553e-05

Joint ci ratio: 4.251791e-01	ci left: 1.679244e-05	ci right 2.606453e-05	k: 84	n:3990000
Cons ci ratio: 1.737398e-01	ci left: 1.164867e-04	ci right 1.388860e-04	k: 508	n:3990000
KS ci ratio: 4.330555e-02	ci left: 2.004988e-03	ci right 2.093983e-03	k: 8176	n:3990000
SDK1   3990000 perm   7470 sec   (534 perm/sec)   p_kst 2.049123e-03   p_cons 1.273183e-04   p_joint 2.105263e-05

Joint ci ratio: 4.753657e-01	ci left: 1.298104e-05	ci right 2.127186e-05	k: 67	n:4000000
Cons ci ratio: 1.737399e-01	ci left: 1.161954e-04	ci right 1.385388e-04	k: 508	n:4000000
KS ci ratio: 4.325798e-02	ci left: 2.004427e-03	ci right 2.093296e-03	k: 8194	n:4000000
SDK1   4000000 perm   7504 sec   (533 perm/sec)   p_kst 2.048500e-03   p_cons 1.270000e-04   p_joint 1.675000e-05

Joint ci ratio: 4.685255e-01	ci left: 1.338808e-05	ci right 2.177649e-05	k: 69	n:4010000
Cons ci ratio: 1.732301e-01	ci left: 1.166213e-04	ci right 1.389738e-04	k: 511	n:4010000
KS ci ratio: 4.321583e-02	ci left: 2.003375e-03	ci right 2.092109e-03	k: 8210	n:4010000
SDK1   4010000 perm   7538 sec   (532 perm/sec)   p_kst 2.047382e-03   p_cons 1.274314e-04   p_joint 1.720698e-05

Joint ci ratio: 4.652142e-01	ci left: 1.357426e-05	ci right 2.200015e-05	k: 70	n:4020000
Cons ci ratio: 1.730612e-01	ci left: 1.165692e-04	ci right 1.388877e-04	k: 512	n:4020000
KS ci ratio: 4.316330e-02	ci left: 2.003313e-03	ci right 2.091934e-03	k: 8230	n:4020000
SDK1   4020000 perm   7574 sec   (531 perm/sec)   p_kst 2.047264e-03   p_cons 1.273632e-04   p_joint 1.741294e-05

Joint ci ratio: 4.652143e-01	ci left: 1.354058e-05	ci right 2.194555e-05	k: 70	n:4030000
Cons ci ratio: 1.728927e-01	ci left: 1.165173e-04	ci right 1.388019e-04	k: 513	n:4030000
KS ci ratio: 4.312405e-02	ci left: 2.002024e-03	ci right 2.090505e-03	k: 8245	n:4030000
SDK1   4030000 perm   7608 sec   (530 perm/sec)   p_kst 2.045906e-03   p_cons 1.272953e-04   p_joint 1.736973e-05

Joint ci ratio: 4.652143e-01	ci left: 1.350706e-05	ci right 2.189123e-05	k: 70	n:4040000
Cons ci ratio: 1.725573e-01	ci left: 1.167026e-04	ci right 1.389748e-04	k: 515	n:4040000
KS ci ratio: 4.306924e-02	ci left: 2.002211e-03	ci right 2.090585e-03	k: 8266	n:4040000
SDK1   4040000 perm   7643 sec   (529 perm/sec)   p_kst 2.046040e-03   p_cons 1.274752e-04   p_joint 1.732673e-05

Joint ci ratio: 4.652143e-01	ci left: 1.347371e-05	ci right 2.183718e-05	k: 70	n:4050000
Cons ci ratio: 1.725574e-01	ci left: 1.164144e-04	ci right 1.386316e-04	k: 515	n:4050000
KS ci ratio: 4.299385e-02	ci left: 2.004350e-03	ci right 2.092660e-03	k: 8295	n:4050000
SDK1   4050000 perm   7677 sec   (528 perm/sec)   p_kst 2.048148e-03   p_cons 1.271605e-04   p_joint 1.728395e-05

Joint ci ratio: 4.619723e-01	ci left: 1.365805e-05	ci right 2.205828e-05	k: 71	n:4060000
Cons ci ratio: 1.723904e-01	ci left: 1.163634e-04	ci right 1.385471e-04	k: 516	n:4060000
KS ci ratio: 4.292920e-02	ci left: 2.005505e-03	ci right 2.093730e-03	k: 8320	n:4060000
SDK1   4060000 perm   7712 sec   (526 perm/sec)   p_kst 2.049261e-03   p_cons 1.270936e-04   p_joint 1.748768e-05

Joint ci ratio: 4.619723e-01	ci left: 1.362449e-05	ci right 2.200409e-05	k: 71	n:4070000
Cons ci ratio: 1.720579e-01	ci left: 1.165477e-04	ci right 1.387192e-04	k: 518	n:4070000
KS ci ratio: 4.288285e-02	ci left: 2.004953e-03	ci right 2.093056e-03	k: 8338	n:4070000
SDK1   4070000 perm   7746 sec   (525 perm/sec)   p_kst 2.048649e-03   p_cons 1.272727e-04   p_joint 1.744472e-05

Joint ci ratio: 4.619723e-01	ci left: 1.359110e-05	ci right 2.195016e-05	k: 71	n:4080000
Cons ci ratio: 1.718924e-01	ci left: 1.164966e-04	ci right 1.386349e-04	k: 519	n:4080000
KS ci ratio: 4.284950e-02	ci left: 2.003191e-03	ci right 2.091146e-03	k: 8351	n:4080000
SDK1   4080000 perm   7782 sec   (524 perm/sec)   p_kst 2.046814e-03   p_cons 1.272059e-04   p_joint 1.740196e-05

Joint ci ratio: 4.619723e-01	ci left: 1.355787e-05	ci right 2.189649e-05	k: 71	n:4090000
Cons ci ratio: 1.718924e-01	ci left: 1.162117e-04	ci right 1.382959e-04	k: 519	n:4090000
KS ci ratio: 4.279317e-02	ci left: 2.003614e-03	ci right 2.091470e-03	k: 8373	n:4090000
SDK1   4090000 perm   7817 sec   (523 perm/sec)   p_kst 2.047188e-03   p_cons 1.268949e-04   p_joint 1.735941e-05

Joint ci ratio: 4.619723e-01	ci left: 1.352480e-05	ci right 2.184308e-05	k: 71	n:4100000
Cons ci ratio: 1.718924e-01	ci left: 1.159283e-04	ci right 1.379586e-04	k: 519	n:4100000
KS ci ratio: 4.275237e-02	ci left: 2.002588e-03	ci right 2.090313e-03	k: 8389	n:4100000
SDK1   4100000 perm   7852 sec   (522 perm/sec)   p_kst 2.046098e-03   p_cons 1.265854e-04   p_joint 1.731707e-05

Joint ci ratio: 4.619723e-01	ci left: 1.349189e-05	ci right 2.178994e-05	k: 71	n:4110000
Cons ci ratio: 1.717274e-01	ci left: 1.158791e-04	ci right 1.378767e-04	k: 520	n:4110000
KS ci ratio: 4.270151e-02	ci left: 2.002530e-03	ci right 2.090145e-03	k: 8409	n:4110000
SDK1   4110000 perm   7887 sec   (521 perm/sec)   p_kst 2.045985e-03   p_cons 1.265207e-04   p_joint 1.727494e-05

Joint ci ratio: 4.619723e-01	ci left: 1.345915e-05	ci right 2.173705e-05	k: 71	n:4120000
Cons ci ratio: 1.715628e-01	ci left: 1.158301e-04	ci right 1.377952e-04	k: 521	n:4120000
KS ci ratio: 4.261285e-02	ci left: 2.006074e-03	ci right 2.093657e-03	k: 8444	n:4120000
SDK1   4120000 perm   7922 sec   (520 perm/sec)   p_kst 2.049515e-03   p_cons 1.264563e-04   p_joint 1.723301e-05

Joint ci ratio: 4.619723e-01	ci left: 1.342656e-05	ci right 2.168442e-05	k: 71	n:4130000
Cons ci ratio: 1.712351e-01	ci left: 1.160131e-04	ci right 1.379666e-04	k: 523	n:4130000
KS ci ratio: 4.257257e-02	ci left: 2.005049e-03	ci right 2.092503e-03	k: 8460	n:4130000
SDK1   4130000 perm   7957 sec   (519 perm/sec)   p_kst 2.048426e-03   p_cons 1.266344e-04   p_joint 1.719128e-05

Joint ci ratio: 4.619724e-01	ci left: 1.339413e-05	ci right 2.163204e-05	k: 71	n:4140000
Cons ci ratio: 1.712351e-01	ci left: 1.157329e-04	ci right 1.376333e-04	k: 523	n:4140000
KS ci ratio: 4.248972e-02	ci left: 2.008093e-03	ci right 2.095505e-03	k: 8493	n:4140000
SDK1   4140000 perm   7993 sec   (518 perm/sec)   p_kst 2.051449e-03   p_cons 1.263285e-04   p_joint 1.714976e-05

Joint ci ratio: 4.619724e-01	ci left: 1.336185e-05	ci right 2.157991e-05	k: 71	n:4150000
Cons ci ratio: 1.710720e-01	ci left: 1.156847e-04	ci right 1.375529e-04	k: 524	n:4150000
KS ci ratio: 4.244729e-02	ci left: 2.007307e-03	ci right 2.094595e-03	k: 8510	n:4150000
SDK1   4150000 perm   8029 sec   (517 perm/sec)   p_kst 2.050602e-03   p_cons 1.262651e-04   p_joint 1.710843e-05

Joint ci ratio: 4.619724e-01	ci left: 1.332973e-05	ci right 2.152804e-05	k: 71	n:4160000
Cons ci ratio: 1.710720e-01	ci left: 1.154066e-04	ci right 1.372223e-04	k: 524	n:4160000
KS ci ratio: 4.241245e-02	ci left: 2.005811e-03	ci right 2.092961e-03	k: 8524	n:4160000
SDK1   4160000 perm   8064 sec   (516 perm/sec)   p_kst 2.049038e-03   p_cons 1.259615e-04   p_joint 1.706731e-05

Joint ci ratio: 4.619724e-01	ci left: 1.329777e-05	ci right 2.147641e-05	k: 71	n:4170000
Cons ci ratio: 1.710720e-01	ci left: 1.151298e-04	ci right 1.368932e-04	k: 524	n:4170000
KS ci ratio: 4.235286e-02	ci left: 2.006695e-03	ci right 2.093759e-03	k: 8548	n:4170000
SDK1   4170000 perm   8100 sec   (515 perm/sec)   p_kst 2.049880e-03   p_cons 1.256595e-04   p_joint 1.702638e-05

Joint ci ratio: 4.587972e-01	ci left: 1.347743e-05	ci right 2.169184e-05	k: 72	n:4180000
Cons ci ratio: 1.709093e-01	ci left: 1.150834e-04	ci right 1.368152e-04	k: 525	n:4180000
KS ci ratio: 4.230341e-02	ci left: 2.006629e-03	ci right 2.093585e-03	k: 8568	n:4180000
SDK1   4180000 perm   8136 sec   (514 perm/sec)   p_kst 2.049761e-03   p_cons 1.255981e-04   p_joint 1.722488e-05

Joint ci ratio: 4.587972e-01	ci left: 1.344527e-05	ci right 2.164007e-05	k: 72	n:4190000
Cons ci ratio: 1.704240e-01	ci left: 1.154941e-04	ci right 1.372352e-04	k: 528	n:4190000
KS ci ratio: 4.226399e-02	ci left: 2.005618e-03	ci right 2.092447e-03	k: 8584	n:4190000
SDK1   4190000 perm   8171 sec   (513 perm/sec)   p_kst 2.048687e-03   p_cons 1.260143e-04   p_joint 1.718377e-05

Joint ci ratio: 4.587973e-01	ci left: 1.341325e-05	ci right 2.158854e-05	k: 72	n:4200000
Cons ci ratio: 1.704240e-01	ci left: 1.152192e-04	ci right 1.369085e-04	k: 528	n:4200000
KS ci ratio: 4.221239e-02	ci left: 2.005790e-03	ci right 2.092518e-03	k: 8605	n:4200000
SDK1   4200000 perm   8207 sec   (512 perm/sec)   p_kst 2.048810e-03   p_cons 1.257143e-04   p_joint 1.714286e-05

Joint ci ratio: 4.556867e-01	ci left: 1.359156e-05	ci right 2.180198e-05	k: 73	n:4210000
Cons ci ratio: 1.701028e-01	ci left: 1.154003e-04	ci right 1.370785e-04	k: 530	n:4210000
KS ci ratio: 4.215608e-02	ci left: 2.006431e-03	ci right 2.093069e-03	k: 8628	n:4210000
SDK1   4210000 perm   8243 sec   (511 perm/sec)   p_kst 2.049406e-03   p_cons 1.258907e-04   p_joint 1.733967e-05

Joint ci ratio: 4.556867e-01	ci left: 1.355935e-05	ci right 2.175032e-05	k: 73	n:4220000
Cons ci ratio: 1.697833e-01	ci left: 1.155806e-04	ci right 1.372478e-04	k: 532	n:4220000
KS ci ratio: 4.209756e-02	ci left: 2.007304e-03	ci right 2.093856e-03	k: 8652	n:4220000
SDK1   4220000 perm   8280 sec   (510 perm/sec)   p_kst 2.050237e-03   p_cons 1.260664e-04   p_joint 1.729858e-05

Joint ci ratio: 4.556867e-01	ci left: 1.352729e-05	ci right 2.169890e-05	k: 73	n:4230000
Cons ci ratio: 1.694656e-01	ci left: 1.157601e-04	ci right 1.374162e-04	k: 534	n:4230000
KS ci ratio: 4.205872e-02	ci left: 2.006301e-03	ci right 2.092728e-03	k: 8668	n:4230000
SDK1   4230000 perm   8316 sec   (509 perm/sec)   p_kst 2.049173e-03   p_cons 1.262411e-04   p_joint 1.725768e-05

Joint ci ratio: 4.526386e-01	ci left: 1.370425e-05	ci right 2.191038e-05	k: 74	n:4240000
Cons ci ratio: 1.689925e-01	ci left: 1.161647e-04	ci right 1.378296e-04	k: 537	n:4240000
KS ci ratio: 4.200787e-02	ci left: 2.006470e-03	ci right 2.092797e-03	k: 8689	n:4240000
SDK1   4240000 perm   8353 sec   (508 perm/sec)   p_kst 2.049292e-03   p_cons 1.266509e-04   p_joint 1.745283e-05

Joint ci ratio: 4.526386e-01	ci left: 1.367200e-05	ci right 2.185883e-05	k: 74	n:4250000
Cons ci ratio: 1.686792e-01	ci left: 1.163420e-04	ci right 1.379957e-04	k: 539	n:4250000
KS ci ratio: 4.197652e-02	ci left: 2.004776e-03	ci right 2.090964e-03	k: 8702	n:4250000
SDK1   4250000 perm   8389 sec   (507 perm/sec)   p_kst 2.047529e-03   p_cons 1.268235e-04   p_joint 1.741176e-05

Joint ci ratio: 4.526386e-01	ci left: 1.363991e-05	ci right 2.180752e-05	k: 74	n:4260000
Cons ci ratio: 1.685232e-01	ci left: 1.162938e-04	ci right 1.379164e-04	k: 540	n:4260000
KS ci ratio: 4.192115e-02	ci left: 2.005412e-03	ci right 2.091511e-03	k: 8725	n:4260000
SDK1   4260000 perm   8425 sec   (506 perm/sec)   p_kst 2.048122e-03   p_cons 1.267606e-04   p_joint 1.737089e-05

Joint ci ratio: 4.526386e-01	ci left: 1.360797e-05	ci right 2.175644e-05	k: 74	n:4270000
Cons ci ratio: 1.683677e-01	ci left: 1.162458e-04	ci right 1.378375e-04	k: 541	n:4270000
KS ci ratio: 4.189480e-02	ci left: 2.003265e-03	ci right 2.089216e-03	k: 8736	n:4270000
SDK1   4270000 perm   8462 sec   (505 perm/sec)   p_kst 2.045902e-03   p_cons 1.266979e-04   p_joint 1.733021e-05

Joint ci ratio: 4.526386e-01	ci left: 1.357617e-05	ci right 2.170561e-05	k: 74	n:4280000
Cons ci ratio: 1.680579e-01	ci left: 1.164218e-04	ci right 1.380024e-04	k: 543	n:4280000
KS ci ratio: 4.185411e-02	ci left: 2.002514e-03	ci right 2.088348e-03	k: 8753	n:4280000
SDK1   4280000 perm   8499 sec   (504 perm/sec)   p_kst 2.045093e-03   p_cons 1.268692e-04   p_joint 1.728972e-05

Joint ci ratio: 4.526386e-01	ci left: 1.354453e-05	ci right 2.165502e-05	k: 74	n:4290000
Cons ci ratio: 1.680579e-01	ci left: 1.161504e-04	ci right 1.376807e-04	k: 543	n:4290000
KS ci ratio: 4.179684e-02	ci left: 2.003382e-03	ci right 2.089133e-03	k: 8777	n:4290000
SDK1   4290000 perm   8535 sec   (503 perm/sec)   p_kst 2.045921e-03   p_cons 1.265734e-04   p_joint 1.724942e-05

Joint ci ratio: 4.526386e-01	ci left: 1.351303e-05	ci right 2.160466e-05	k: 74	n:4300000
Cons ci ratio: 1.679037e-01	ci left: 1.161031e-04	ci right 1.376028e-04	k: 544	n:4300000
KS ci ratio: 4.174455e-02	ci left: 2.003786e-03	ci right 2.089445e-03	k: 8799	n:4300000
SDK1   4300000 perm   8571 sec   (502 perm/sec)   p_kst 2.046279e-03   p_cons 1.265116e-04   p_joint 1.720930e-05

Joint ci ratio: 4.526386e-01	ci left: 1.348167e-05	ci right 2.155453e-05	k: 74	n:4310000
Cons ci ratio: 1.677499e-01	ci left: 1.160559e-04	ci right 1.375253e-04	k: 545	n:4310000
KS ci ratio: 4.170194e-02	ci left: 2.003270e-03	ci right 2.088817e-03	k: 8817	n:4310000
SDK1   4310000 perm   8608 sec   (501 perm/sec)   p_kst 2.045708e-03   p_cons 1.264501e-04   p_joint 1.716937e-05

Joint ci ratio: 4.526386e-01	ci left: 1.345047e-05	ci right 2.150463e-05	k: 74	n:4320000
Cons ci ratio: 1.672909e-01	ci left: 1.164526e-04	ci right 1.379305e-04	k: 548	n:4320000
KS ci ratio: 4.164293e-02	ci left: 2.004359e-03	ci right 2.089829e-03	k: 8842	n:4320000
SDK1   4320000 perm   8645 sec   (500 perm/sec)   p_kst 2.046759e-03   p_cons 1.268519e-04   p_joint 1.712963e-05

Joint ci ratio: 4.526386e-01	ci left: 1.341940e-05	ci right 2.145497e-05	k: 74	n:4330000
Cons ci ratio: 1.671387e-01	ci left: 1.164050e-04	ci right 1.378526e-04	k: 549	n:4330000
KS ci ratio: 4.160768e-02	ci left: 2.003159e-03	ci right 2.088503e-03	k: 8857	n:4330000
SDK1   4330000 perm   8682 sec   (499 perm/sec)   p_kst 2.045497e-03   p_cons 1.267898e-04   p_joint 1.709007e-05

Joint ci ratio: 4.496508e-01	ci left: 1.359271e-05	ci right 2.166197e-05	k: 75	n:4340000
Cons ci ratio: 1.666847e-01	ci left: 1.167991e-04	ci right 1.382550e-04	k: 552	n:4340000
KS ci ratio: 4.156548e-02	ci left: 2.002647e-03	ci right 2.087881e-03	k: 8875	n:4340000
SDK1   4340000 perm   8719 sec   (498 perm/sec)   p_kst 2.044931e-03   p_cons 1.271889e-04   p_joint 1.728111e-05

Joint ci ratio: 4.467215e-01	ci left: 1.376539e-05	ci right 2.186784e-05	k: 76	n:4350000
Cons ci ratio: 1.663841e-01	ci left: 1.169712e-04	ci right 1.384161e-04	k: 554	n:4350000
KS ci ratio: 4.151172e-02	ci left: 2.003276e-03	ci right 2.088424e-03	k: 8898	n:4350000
SDK1   4350000 perm   8756 sec   (497 perm/sec)   p_kst 2.045517e-03   p_cons 1.273563e-04   p_joint 1.747126e-05

Joint ci ratio: 4.467215e-01	ci left: 1.373382e-05	ci right 2.181769e-05	k: 76	n:4360000
Cons ci ratio: 1.660851e-01	ci left: 1.171426e-04	ci right 1.385764e-04	k: 556	n:4360000
KS ci ratio: 4.146748e-02	ci left: 2.002994e-03	ci right 2.088037e-03	k: 8917	n:4360000
SDK1   4360000 perm   8793 sec   (496 perm/sec)   p_kst 2.045183e-03   p_cons 1.275229e-04   p_joint 1.743119e-05

Joint ci ratio: 4.467215e-01	ci left: 1.370239e-05	ci right 2.176776e-05	k: 76	n:4370000
Cons ci ratio: 1.660851e-01	ci left: 1.168745e-04	ci right 1.382593e-04	k: 556	n:4370000
KS ci ratio: 4.142106e-02	ci left: 2.002940e-03	ci right 2.087883e-03	k: 8937	n:4370000
SDK1   4370000 perm   8831 sec   (495 perm/sec)   p_kst 2.045080e-03   p_cons 1.272311e-04   p_joint 1.739130e-05

Joint ci ratio: 4.467215e-01	ci left: 1.367111e-05	ci right 2.171807e-05	k: 76	n:4380000
Cons ci ratio: 1.657877e-01	ci left: 1.170453e-04	ci right 1.384192e-04	k: 558	n:4380000
KS ci ratio: 4.137249e-02	ci left: 2.003112e-03	ci right 2.087960e-03	k: 8958	n:4380000
SDK1   4380000 perm   8868 sec   (494 perm/sec)   p_kst 2.045205e-03   p_cons 1.273973e-04   p_joint 1.735160e-05

Joint ci ratio: 4.467215e-01	ci left: 1.363997e-05	ci right 2.166859e-05	k: 76	n:4390000
Cons ci ratio: 1.656396e-01	ci left: 1.169971e-04	ci right 1.383411e-04	k: 559	n:4390000
KS ci ratio: 4.133331e-02	ci left: 2.002381e-03	ci right 2.087116e-03	k: 8975	n:4390000
SDK1   4390000 perm   8906 sec   (493 perm/sec)   p_kst 2.044419e-03   p_cons 1.273349e-04   p_joint 1.731207e-05

Joint ci ratio: 4.467215e-01	ci left: 1.360897e-05	ci right 2.161935e-05	k: 76	n:4400000
Cons ci ratio: 1.654920e-01	ci left: 1.169490e-04	ci right 1.382634e-04	k: 560	n:4400000
KS ci ratio: 4.125977e-02	ci left: 2.005028e-03	ci right 2.089720e-03	k: 9007	n:4400000
SDK1   4400000 perm   8944 sec   (492 perm/sec)   p_kst 2.047045e-03   p_cons 1.272727e-04   p_joint 1.727273e-05

Joint ci ratio: 4.410305e-01	ci left: 1.398092e-05	ci right 2.207422e-05	k: 78	n:4410000
Cons ci ratio: 1.649051e-01	ci left: 1.175534e-04	ci right 1.388944e-04	k: 564	n:4410000
KS ci ratio: 4.121633e-02	ci left: 2.004745e-03	ci right 2.089335e-03	k: 9026	n:4410000
SDK1   4410000 perm   8982 sec   (491 perm/sec)   p_kst 2.046712e-03   p_cons 1.278912e-04   p_joint 1.768707e-05

Joint ci ratio: 4.410305e-01	ci left: 1.394929e-05	ci right 2.202428e-05	k: 78	n:4420000
Cons ci ratio: 1.647593e-01	ci left: 1.175043e-04	ci right 1.388157e-04	k: 565	n:4420000
KS ci ratio: 4.117303e-02	ci left: 2.004464e-03	ci right 2.088951e-03	k: 9045	n:4420000
SDK1   4420000 perm   9020 sec   (490 perm/sec)   p_kst 2.046380e-03   p_cons 1.278281e-04   p_joint 1.764706e-05

Joint ci ratio: 4.410305e-01	ci left: 1.391780e-05	ci right 2.197456e-05	k: 78	n:4430000
Cons ci ratio: 1.644690e-01	ci left: 1.176719e-04	ci right 1.389724e-04	k: 567	n:4430000
KS ci ratio: 4.112987e-02	ci left: 2.004184e-03	ci right 2.088568e-03	k: 9064	n:4430000
SDK1   4430000 perm   9059 sec   (489 perm/sec)   p_kst 2.046050e-03   p_cons 1.279910e-04   p_joint 1.760722e-05

Joint ci ratio: 4.410305e-01	ci left: 1.388646e-05	ci right 2.192507e-05	k: 78	n:4440000
Cons ci ratio: 1.643244e-01	ci left: 1.176229e-04	ci right 1.388939e-04	k: 568	n:4440000
KS ci ratio: 4.108231e-02	ci left: 2.004351e-03	ci right 2.088643e-03	k: 9085	n:4440000
SDK1   4440000 perm   9097 sec   (488 perm/sec)   p_kst 2.046171e-03   p_cons 1.279279e-04   p_joint 1.756757e-05

Joint ci ratio: 4.410305e-01	ci left: 1.385525e-05	ci right 2.187580e-05	k: 78	n:4450000
Cons ci ratio: 1.643244e-01	ci left: 1.173585e-04	ci right 1.385818e-04	k: 568	n:4450000
KS ci ratio: 4.103943e-02	ci left: 2.004073e-03	ci right 2.088262e-03	k: 9104	n:4450000
SDK1   4450000 perm   9135 sec   (487 perm/sec)   p_kst 2.045843e-03   p_cons 1.276404e-04   p_joint 1.752809e-05

Joint ci ratio: 4.410305e-01	ci left: 1.382419e-05	ci right 2.182675e-05	k: 78	n:4460000
Cons ci ratio: 1.641802e-01	ci left: 1.173104e-04	ci right 1.385045e-04	k: 569	n:4460000
KS ci ratio: 4.098993e-02	ci left: 2.004462e-03	ci right 2.088564e-03	k: 9126	n:4460000
SDK1   4460000 perm   9173 sec   (486 perm/sec)   p_kst 2.046188e-03   p_cons 1.275785e-04   p_joint 1.748879e-05

Joint ci ratio: 4.355516e-01	ci left: 1.419131e-05	ci right 2.227443e-05	k: 80	n:4470000
Cons ci ratio: 1.638929e-01	ci left: 1.174770e-04	ci right 1.386604e-04	k: 571	n:4470000
KS ci ratio: 4.093388e-02	ci left: 2.005513e-03	ci right 2.089541e-03	k: 9151	n:4470000
SDK1   4470000 perm   9211 sec   (485 perm/sec)   p_kst 2.047204e-03   p_cons 1.277405e-04   p_joint 1.789709e-05

Joint ci ratio: 4.355516e-01	ci left: 1.415963e-05	ci right 2.222471e-05	k: 80	n:4480000
Cons ci ratio: 1.638930e-01	ci left: 1.172148e-04	ci right 1.383509e-04	k: 571	n:4480000
KS ci ratio: 4.089147e-02	ci left: 2.005234e-03	ci right 2.089162e-03	k: 9170	n:4480000
SDK1   4480000 perm   9249 sec   (484 perm/sec)   p_kst 2.046875e-03   p_cons 1.274554e-04   p_joint 1.785714e-05

Joint ci ratio: 4.355516e-01	ci left: 1.412809e-05	ci right 2.217521e-05	k: 80	n:4490000
Cons ci ratio: 1.634648e-01	ci left: 1.175945e-04	ci right 1.387383e-04	k: 574	n:4490000
KS ci ratio: 4.087370e-02	ci left: 2.002532e-03	ci right 2.086309e-03	k: 9178	n:4490000
SDK1   4490000 perm   9288 sec   (483 perm/sec)   p_kst 2.044098e-03   p_cons 1.278396e-04   p_joint 1.781737e-05

Joint ci ratio: 4.355516e-01	ci left: 1.409670e-05	ci right 2.212594e-05	k: 80	n:4500000
Cons ci ratio: 1.631813e-01	ci left: 1.177595e-04	ci right 1.388925e-04	k: 576	n:4500000
KS ci ratio: 4.082258e-02	ci left: 2.003140e-03	ci right 2.086836e-03	k: 9201	n:4500000
SDK1   4500000 perm   9326 sec   (483 perm/sec)   p_kst 2.044667e-03   p_cons 1.280000e-04   p_joint 1.777778e-05

Joint ci ratio: 4.355516e-01	ci left: 1.406544e-05	ci right 2.207688e-05	k: 80	n:4510000
Cons ci ratio: 1.631813e-01	ci left: 1.174984e-04	ci right 1.385846e-04	k: 576	n:4510000
KS ci ratio: 4.078272e-02	ci left: 2.002649e-03	ci right 2.086240e-03	k: 9219	n:4510000
SDK1   4510000 perm   9366 sec   (482 perm/sec)   p_kst 2.044124e-03   p_cons 1.277162e-04   p_joint 1.773836e-05

Joint ci ratio: 4.355516e-01	ci left: 1.403432e-05	ci right 2.202803e-05	k: 80	n:4520000
Cons ci ratio: 1.631813e-01	ci left: 1.172384e-04	ci right 1.382780e-04	k: 576	n:4520000
KS ci ratio: 4.073193e-02	ci left: 2.003255e-03	ci right 2.086765e-03	k: 9242	n:4520000
SDK1   4520000 perm   9405 sec   (481 perm/sec)   p_kst 2.044690e-03   p_cons 1.274336e-04   p_joint 1.769912e-05

Joint ci ratio: 4.355516e-01	ci left: 1.400334e-05	ci right 2.197941e-05	k: 80	n:4530000
Cons ci ratio: 1.631813e-01	ci left: 1.169796e-04	ci right 1.379727e-04	k: 576	n:4530000
KS ci ratio: 4.068794e-02	ci left: 2.003203e-03	ci right 2.086619e-03	k: 9262	n:4530000
SDK1   4530000 perm   9444 sec   (480 perm/sec)   p_kst 2.044592e-03   p_cons 1.271523e-04   p_joint 1.766004e-05

Joint ci ratio: 4.355516e-01	ci left: 1.397250e-05	ci right 2.193099e-05	k: 80	n:4540000
Cons ci ratio: 1.631813e-01	ci left: 1.167220e-04	ci right 1.376688e-04	k: 576	n:4540000
KS ci ratio: 4.065506e-02	ci left: 2.002061e-03	ci right 2.085360e-03	k: 9277	n:4540000
SDK1   4540000 perm   9483 sec   (479 perm/sec)   p_kst 2.043392e-03   p_cons 1.268722e-04   p_joint 1.762115e-05

Joint ci ratio: 4.355516e-01	ci left: 1.394179e-05	ci right 2.188279e-05	k: 80	n:4550000
Cons ci ratio: 1.628993e-01	ci left: 1.168871e-04	ci right 1.378237e-04	k: 578	n:4550000
KS ci ratio: 4.060038e-02	ci left: 2.003100e-03	ci right 2.086327e-03	k: 9302	n:4550000
SDK1   4550000 perm   9521 sec   (478 perm/sec)   p_kst 2.044396e-03   p_cons 1.270330e-04   p_joint 1.758242e-05

Joint ci ratio: 4.355516e-01	ci left: 1.391121e-05	ci right 2.183481e-05	k: 80	n:4560000
Cons ci ratio: 1.627588e-01	ci left: 1.168411e-04	ci right 1.377497e-04	k: 579	n:4560000
KS ci ratio: 4.055681e-02	ci left: 2.003048e-03	ci right 2.086182e-03	k: 9322	n:4560000
SDK1   4560000 perm   9561 sec   (477 perm/sec)   p_kst 2.044298e-03   p_cons 1.269737e-04   p_joint 1.754386e-05

Joint ci ratio: 4.355516e-01	ci left: 1.388077e-05	ci right 2.178703e-05	k: 80	n:4570000
Cons ci ratio: 1.624789e-01	ci left: 1.170052e-04	ci right 1.379037e-04	k: 581	n:4570000
KS ci ratio: 4.050035e-02	ci left: 2.004297e-03	ci right 2.087364e-03	k: 9348	n:4570000
SDK1   4570000 perm   9600 sec   (476 perm/sec)   p_kst 2.045514e-03   p_cons 1.271335e-04   p_joint 1.750547e-05

Joint ci ratio: 4.328877e-01	ci left: 1.404493e-05	ci right 2.198153e-05	k: 81	n:4580000
Cons ci ratio: 1.623395e-01	ci left: 1.169592e-04	ci right 1.378298e-04	k: 582	n:4580000
KS ci ratio: 4.046143e-02	ci left: 2.003811e-03	ci right 2.086777e-03	k: 9366	n:4580000
SDK1   4580000 perm   9640 sec   (475 perm/sec)   p_kst 2.044978e-03   p_cons 1.270742e-04   p_joint 1.768559e-05

Joint ci ratio: 4.328877e-01	ci left: 1.401434e-05	ci right 2.193364e-05	k: 81	n:4590000
Cons ci ratio: 1.620617e-01	ci left: 1.171225e-04	ci right 1.379829e-04	k: 584	n:4590000
KS ci ratio: 4.041830e-02	ci left: 2.003759e-03	ci right 2.086632e-03	k: 9386	n:4590000
SDK1   4590000 perm   9679 sec   (474 perm/sec)   p_kst 2.044880e-03   p_cons 1.272331e-04   p_joint 1.764706e-05

Joint ci ratio: 4.328877e-01	ci left: 1.398387e-05	ci right 2.188595e-05	k: 81	n:4600000
Cons ci ratio: 1.620617e-01	ci left: 1.168679e-04	ci right 1.376830e-04	k: 584	n:4600000
KS ci ratio: 4.038607e-02	ci left: 2.002631e-03	ci right 2.085389e-03	k: 9401	n:4600000
SDK1   4600000 perm   9718 sec   (473 perm/sec)   p_kst 2.043696e-03   p_cons 1.269565e-04   p_joint 1.760870e-05

Joint ci ratio: 4.328877e-01	ci left: 1.395354e-05	ci right 2.183848e-05	k: 81	n:4610000
Cons ci ratio: 1.617854e-01	ci left: 1.170306e-04	ci right 1.378357e-04	k: 586	n:4610000
KS ci ratio: 4.034533e-02	ci left: 2.002367e-03	ci right 2.085029e-03	k: 9420	n:4610000
SDK1   4610000 perm   9757 sec   (472 perm/sec)   p_kst 2.043384e-03   p_cons 1.271150e-04   p_joint 1.757050e-05

Joint ci ratio: 4.328877e-01	ci left: 1.392333e-05	ci right 2.179121e-05	k: 81	n:4620000
Cons ci ratio: 1.615105e-01	ci left: 1.171927e-04	ci right 1.379878e-04	k: 588	n:4620000
KS ci ratio: 4.028761e-02	ci left: 2.003818e-03	ci right 2.086419e-03	k: 9447	n:4620000
SDK1   4620000 perm   9796 sec   (472 perm/sec)   p_kst 2.044805e-03   p_cons 1.272727e-04   p_joint 1.753247e-05

Joint ci ratio: 4.328877e-01	ci left: 1.389326e-05	ci right 2.174414e-05	k: 81	n:4630000
Cons ci ratio: 1.609648e-01	ci left: 1.177686e-04	ci right 1.385885e-04	k: 592	n:4630000
KS ci ratio: 4.023866e-02	ci left: 2.004407e-03	ci right 2.086930e-03	k: 9470	n:4630000
SDK1   4630000 perm   9836 sec   (471 perm/sec)   p_kst 2.045356e-03   p_cons 1.278618e-04   p_joint 1.749460e-05

Joint ci ratio: 4.328877e-01	ci left: 1.386332e-05	ci right 2.169728e-05	k: 81	n:4640000
Cons ci ratio: 1.609648e-01	ci left: 1.175148e-04	ci right 1.382898e-04	k: 592	n:4640000
KS ci ratio: 4.017715e-02	ci left: 2.006275e-03	ci right 2.088745e-03	k: 9499	n:4640000
SDK1   4640000 perm   9875 sec   (470 perm/sec)   p_kst 2.047198e-03   p_cons 1.275862e-04   p_joint 1.745690e-05

Joint ci ratio: 4.328877e-01	ci left: 1.383351e-05	ci right 2.165062e-05	k: 81	n:4650000
Cons ci ratio: 1.605591e-01	ci left: 1.178813e-04	ci right 1.386635e-04	k: 595	n:4650000
KS ci ratio: 4.014338e-02	ci left: 2.005367e-03	ci right 2.087729e-03	k: 9515	n:4650000
SDK1   4650000 perm   9915 sec   (469 perm/sec)   p_kst 2.046237e-03   p_cons 1.279570e-04   p_joint 1.741935e-05

Joint ci ratio: 4.328877e-01	ci left: 1.380382e-05	ci right 2.160416e-05	k: 81	n:4660000
Cons ci ratio: 1.604246e-01	ci left: 1.178343e-04	ci right 1.385892e-04	k: 596	n:4660000
KS ci ratio: 4.008863e-02	ci left: 2.006587e-03	ci right 2.088884e-03	k: 9541	n:4660000
SDK1   4660000 perm   9955 sec   (468 perm/sec)   p_kst 2.047425e-03   p_cons 1.278970e-04   p_joint 1.738197e-05

Joint ci ratio: 4.328877e-01	ci left: 1.377426e-05	ci right 2.155790e-05	k: 81	n:4670000
Cons ci ratio: 1.602904e-01	ci left: 1.177875e-04	ci right 1.385151e-04	k: 597	n:4670000
KS ci ratio: 4.004459e-02	ci left: 2.006742e-03	ci right 2.088953e-03	k: 9562	n:4670000
SDK1   4670000 perm   9994 sec   (467 perm/sec)   p_kst 2.047537e-03   p_cons 1.278373e-04   p_joint 1.734475e-05

Joint ci ratio: 4.277032e-01	ci left: 1.412589e-05	ci right 2.198521e-05	k: 83	n:4680000
Cons ci ratio: 1.600231e-01	ci left: 1.179461e-04	ci right 1.386636e-04	k: 599	n:4680000
KS ci ratio: 3.999024e-02	ci left: 2.007954e-03	ci right 2.090100e-03	k: 9588	n:4680000
SDK1   4680000 perm   10034 sec   (466 perm/sec)   p_kst 2.048718e-03   p_cons 1.279915e-04   p_joint 1.773504e-05

Joint ci ratio: 4.277032e-01	ci left: 1.409577e-05	ci right 2.193833e-05	k: 83	n:4690000
Cons ci ratio: 1.597570e-01	ci left: 1.181040e-04	ci right 1.388114e-04	k: 601	n:4690000
KS ci ratio: 3.994860e-02	ci left: 2.007894e-03	ci right 2.089951e-03	k: 9608	n:4690000
SDK1   4690000 perm   10073 sec   (466 perm/sec)   p_kst 2.048614e-03   p_cons 1.281450e-04   p_joint 1.769723e-05

Joint ci ratio: 4.277032e-01	ci left: 1.406578e-05	ci right 2.189165e-05	k: 83	n:4700000
Cons ci ratio: 1.596245e-01	ci left: 1.180570e-04	ci right 1.387374e-04	k: 602	n:4700000
KS ci ratio: 3.990294e-02	ci left: 2.008256e-03	ci right 2.090232e-03	k: 9630	n:4700000
SDK1   4700000 perm   10113 sec   (465 perm/sec)   p_kst 2.048936e-03   p_cons 1.280851e-04   p_joint 1.765957e-05

Joint ci ratio: 4.277032e-01	ci left: 1.403591e-05	ci right 2.184517e-05	k: 83	n:4710000
Cons ci ratio: 1.594923e-01	ci left: 1.180101e-04	ci right 1.386636e-04	k: 603	n:4710000
KS ci ratio: 3.986158e-02	ci left: 2.008196e-03	ci right 2.090082e-03	k: 9650	n:4710000
SDK1   4710000 perm   10154 sec   (464 perm/sec)   p_kst 2.048832e-03   p_cons 1.280255e-04   p_joint 1.762208e-05

Joint ci ratio: 4.277032e-01	ci left: 1.400618e-05	ci right 2.179889e-05	k: 83	n:4720000
Cons ci ratio: 1.593604e-01	ci left: 1.179635e-04	ci right 1.385901e-04	k: 604	n:4720000
KS ci ratio: 3.982447e-02	ci left: 2.007717e-03	ci right 2.089506e-03	k: 9668	n:4720000
SDK1   4720000 perm   10194 sec   (463 perm/sec)   p_kst 2.048305e-03   p_cons 1.279661e-04   p_joint 1.758475e-05

Joint ci ratio: 4.277032e-01	ci left: 1.397656e-05	ci right 2.175281e-05	k: 83	n:4730000
Cons ci ratio: 1.592289e-01	ci left: 1.179171e-04	ci right 1.385169e-04	k: 605	n:4730000
KS ci ratio: 3.978952e-02	ci left: 2.007031e-03	ci right 2.088718e-03	k: 9685	n:4730000
SDK1   4730000 perm   10234 sec   (462 perm/sec)   p_kst 2.047569e-03   p_cons 1.279070e-04   p_joint 1.754757e-05

Joint ci ratio: 4.277032e-01	ci left: 1.394708e-05	ci right 2.170691e-05	k: 83	n:4740000
Cons ci ratio: 1.592289e-01	ci left: 1.176684e-04	ci right 1.382247e-04	k: 605	n:4740000
KS ci ratio: 3.975466e-02	ci left: 2.006347e-03	ci right 2.087934e-03	k: 9702	n:4740000
SDK1   4740000 perm   10275 sec   (461 perm/sec)   p_kst 2.046835e-03   p_cons 1.276371e-04   p_joint 1.751055e-05

Joint ci ratio: 4.251798e-01	ci left: 1.410564e-05	ci right 2.189421e-05	k: 84	n:4750000
Cons ci ratio: 1.590977e-01	ci left: 1.176228e-04	ci right 1.381526e-04	k: 606	n:4750000
KS ci ratio: 3.970762e-02	ci left: 2.006918e-03	ci right 2.088428e-03	k: 9725	n:4750000
SDK1   4750000 perm   10316 sec   (460 perm/sec)   p_kst 2.047368e-03   p_cons 1.275789e-04   p_joint 1.768421e-05

Joint ci ratio: 4.251799e-01	ci left: 1.407601e-05	ci right 2.184821e-05	k: 84	n:4760000
Cons ci ratio: 1.587060e-01	ci left: 1.179809e-04	ci right 1.385177e-04	k: 609	n:4760000
KS ci ratio: 3.966481e-02	ci left: 2.007069e-03	ci right 2.088496e-03	k: 9746	n:4760000
SDK1   4760000 perm   10357 sec   (460 perm/sec)   p_kst 2.047479e-03   p_cons 1.279412e-04   p_joint 1.764706e-05

Joint ci ratio: 4.251799e-01	ci left: 1.404650e-05	ci right 2.180241e-05	k: 84	n:4770000
Cons ci ratio: 1.585761e-01	ci left: 1.179348e-04	ci right 1.384452e-04	k: 610	n:4770000
KS ci ratio: 3.962622e-02	ci left: 2.006805e-03	ci right 2.088141e-03	k: 9765	n:4770000
SDK1   4770000 perm   10397 sec   (459 perm/sec)   p_kst 2.047170e-03   p_cons 1.278826e-04   p_joint 1.761006e-05

Joint ci ratio: 4.277033e-01	ci left: 1.383037e-05	ci right 2.152527e-05	k: 83	n:4780000
Cons ci ratio: 1.584464e-01	ci left: 1.178890e-04	ci right 1.383731e-04	k: 611	n:4780000
KS ci ratio: 3.958368e-02	ci left: 2.006957e-03	ci right 2.088209e-03	k: 9786	n:4780000
SDK1   4780000 perm   10437 sec   (458 perm/sec)   p_kst 2.047280e-03   p_cons 1.278243e-04   p_joint 1.736402e-05

Joint ci ratio: 4.277033e-01	ci left: 1.380149e-05	ci right 2.148033e-05	k: 83	n:4790000
Cons ci ratio: 1.583172e-01	ci left: 1.178434e-04	ci right 1.383013e-04	k: 612	n:4790000
KS ci ratio: 3.953724e-02	ci left: 2.007521e-03	ci right 2.088699e-03	k: 9809	n:4790000
SDK1   4790000 perm   10478 sec   (457 perm/sec)   p_kst 2.047808e-03   p_cons 1.277662e-04   p_joint 1.732777e-05

Joint ci ratio: 4.277033e-01	ci left: 1.377274e-05	ci right 2.143558e-05	k: 83	n:4800000
Cons ci ratio: 1.581882e-01	ci left: 1.177980e-04	ci right 1.382297e-04	k: 613	n:4800000
KS ci ratio: 3.949297e-02	ci left: 2.007877e-03	ci right 2.088976e-03	k: 9831	n:4800000
SDK1   4800000 perm   10519 sec   (456 perm/sec)   p_kst 2.048125e-03   p_cons 1.277083e-04   p_joint 1.729167e-05

Joint ci ratio: 4.277033e-01	ci left: 1.374411e-05	ci right 2.139101e-05	k: 83	n:4810000
Cons ci ratio: 1.581882e-01	ci left: 1.175531e-04	ci right 1.379423e-04	k: 613	n:4810000
KS ci ratio: 3.943082e-02	ci left: 2.010084e-03	ci right 2.091141e-03	k: 9862	n:4810000
SDK1   4810000 perm   10560 sec   (455 perm/sec)   p_kst 2.050312e-03   p_cons 1.274428e-04   p_joint 1.725572e-05

Joint ci ratio: 4.277033e-01	ci left: 1.371559e-05	ci right 2.134663e-05	k: 83	n:4820000
Cons ci ratio: 1.580596e-01	ci left: 1.175084e-04	ci right 1.378718e-04	k: 614	n:4820000
KS ci ratio: 3.937294e-02	ci left: 2.011871e-03	ci right 2.092879e-03	k: 9891	n:4820000
SDK1   4820000 perm   10601 sec   (455 perm/sec)   p_kst 2.052075e-03   p_cons 1.273859e-04   p_joint 1.721992e-05

Joint ci ratio: 4.251799e-01	ci left: 1.387201e-05	ci right 2.153157e-05	k: 84	n:4830000
Cons ci ratio: 1.578032e-01	ci left: 1.176629e-04	ci right 1.380168e-04	k: 616	n:4830000
KS ci ratio: 3.933519e-02	ci left: 2.011601e-03	ci right 2.092518e-03	k: 9910	n:4830000
SDK1   4830000 perm   10643 sec   (454 perm/sec)   p_kst 2.051760e-03   p_cons 1.275362e-04   p_joint 1.739130e-05

Joint ci ratio: 4.251799e-01	ci left: 1.384335e-05	ci right 2.148709e-05	k: 84	n:4840000
Cons ci ratio: 1.576754e-01	ci left: 1.176182e-04	ci right 1.379464e-04	k: 617	n:4840000
KS ci ratio: 3.929953e-02	ci left: 2.011127e-03	ci right 2.091950e-03	k: 9928	n:4840000
SDK1   4840000 perm   10685 sec   (453 perm/sec)   p_kst 2.051240e-03   p_cons 1.274793e-04   p_joint 1.735537e-05

Joint ci ratio: 4.251799e-01	ci left: 1.381480e-05	ci right 2.144278e-05	k: 84	n:4850000
Cons ci ratio: 1.575480e-01	ci left: 1.175738e-04	ci right 1.378763e-04	k: 618	n:4850000
KS ci ratio: 3.926199e-02	ci left: 2.010859e-03	ci right 2.091593e-03	k: 9947	n:4850000
SDK1   4850000 perm   10725 sec   (452 perm/sec)   p_kst 2.050928e-03   p_cons 1.274227e-04   p_joint 1.731959e-05

Joint ci ratio: 4.251799e-01	ci left: 1.378638e-05	ci right 2.139866e-05	k: 84	n:4860000
Cons ci ratio: 1.574209e-01	ci left: 1.175295e-04	ci right 1.378065e-04	k: 619	n:4860000
KS ci ratio: 3.920879e-02	ci left: 2.012223e-03	ci right 2.092899e-03	k: 9974	n:4860000
SDK1   4860000 perm   10767 sec   (451 perm/sec)   p_kst 2.052263e-03   p_cons 1.273663e-04   p_joint 1.728395e-05

Joint ci ratio: 4.251799e-01	ci left: 1.375807e-05	ci right 2.135472e-05	k: 84	n:4870000
Cons ci ratio: 1.574210e-01	ci left: 1.172882e-04	ci right 1.375235e-04	k: 619	n:4870000
KS ci ratio: 3.917347e-02	ci left: 2.011751e-03	ci right 2.092334e-03	k: 9992	n:4870000
SDK1   4870000 perm   10809 sec   (451 perm/sec)   p_kst 2.051745e-03   p_cons 1.271047e-04   p_joint 1.724846e-05

Joint ci ratio: 4.251800e-01	ci left: 1.372988e-05	ci right 2.131096e-05	k: 84	n:4880000
Cons ci ratio: 1.569155e-01	ci left: 1.178353e-04	ci right 1.380936e-04	k: 623	n:4880000
KS ci ratio: 3.914412e-02	ci left: 2.010672e-03	ci right 2.091150e-03	k: 10007	n:4880000
SDK1   4880000 perm   10851 sec   (450 perm/sec)   p_kst 2.050615e-03   p_cons 1.276639e-04   p_joint 1.721311e-05

Joint ci ratio: 4.251800e-01	ci left: 1.370180e-05	ci right 2.126738e-05	k: 84	n:4890000
Cons ci ratio: 1.566647e-01	ci left: 1.179872e-04	ci right 1.382362e-04	k: 625	n:4890000
KS ci ratio: 3.909921e-02	ci left: 2.011218e-03	ci right 2.091623e-03	k: 10030	n:4890000
SDK1   4890000 perm   10893 sec   (449 perm/sec)   p_kst 2.051125e-03   p_cons 1.278119e-04   p_joint 1.717791e-05

Joint ci ratio: 4.251800e-01	ci left: 1.367384e-05	ci right 2.122398e-05	k: 84	n:4900000
Cons ci ratio: 1.565397e-01	ci left: 1.179425e-04	ci right 1.381661e-04	k: 626	n:4900000
KS ci ratio: 3.904862e-02	ci left: 2.012367e-03	ci right 2.092713e-03	k: 10056	n:4900000
SDK1   4900000 perm   10934 sec   (448 perm/sec)   p_kst 2.052245e-03   p_cons 1.277551e-04   p_joint 1.714286e-05

Joint ci ratio: 4.251800e-01	ci left: 1.364599e-05	ci right 2.118075e-05	k: 84	n:4910000
Cons ci ratio: 1.562906e-01	ci left: 1.180937e-04	ci right 1.383080e-04	k: 628	n:4910000
KS ci ratio: 3.899241e-02	ci left: 2.014118e-03	ci right 2.094414e-03	k: 10085	n:4910000
SDK1   4910000 perm   10977 sec   (447 perm/sec)   p_kst 2.053971e-03   p_cons 1.279022e-04   p_joint 1.710794e-05

Joint ci ratio: 4.277034e-01	ci left: 1.343682e-05	ci right 2.091276e-05	k: 83	n:4920000
Cons ci ratio: 1.560427e-01	ci left: 1.182443e-04	ci right 1.384493e-04	k: 630	n:4920000
KS ci ratio: 3.894415e-02	ci left: 2.015056e-03	ci right 2.095288e-03	k: 10110	n:4920000
SDK1   4920000 perm   11019 sec   (447 perm/sec)   p_kst 2.054878e-03   p_cons 1.280488e-04   p_joint 1.686992e-05

Joint ci ratio: 4.277034e-01	ci left: 1.340956e-05	ci right 2.087034e-05	k: 83	n:4930000
Cons ci ratio: 1.559192e-01	ci left: 1.181994e-04	ci right 1.383792e-04	k: 631	n:4930000
KS ci ratio: 3.890377e-02	ci left: 2.015187e-03	ci right 2.095339e-03	k: 10131	n:4930000
SDK1   4930000 perm   11061 sec   (446 perm/sec)   p_kst 2.054970e-03   p_cons 1.279919e-04   p_joint 1.683570e-05

Joint ci ratio: 4.277034e-01	ci left: 1.338242e-05	ci right 2.082809e-05	k: 83	n:4940000
Cons ci ratio: 1.557960e-01	ci left: 1.181546e-04	ci right 1.383094e-04	k: 632	n:4940000
KS ci ratio: 3.887503e-02	ci left: 2.014114e-03	ci right 2.094164e-03	k: 10146	n:4940000
SDK1   4940000 perm   11104 sec   (445 perm/sec)   p_kst 2.053846e-03   p_cons 1.279352e-04   p_joint 1.680162e-05

Joint ci ratio: 4.277034e-01	ci left: 1.335538e-05	ci right 2.078602e-05	k: 83	n:4950000
Cons ci ratio: 1.554281e-01	ci left: 1.184984e-04	ci right 1.386596e-04	k: 635	n:4950000
KS ci ratio: 3.885209e-02	ci left: 2.012446e-03	ci right 2.092381e-03	k: 10158	n:4950000
SDK1   4950000 perm   11146 sec   (444 perm/sec)   p_kst 2.052121e-03   p_cons 1.282828e-04   p_joint 1.676768e-05

Joint ci ratio: 4.277034e-01	ci left: 1.332846e-05	ci right 2.074411e-05	k: 83	n:4960000
Cons ci ratio: 1.554281e-01	ci left: 1.182595e-04	ci right 1.383801e-04	k: 635	n:4960000
KS ci ratio: 3.881582e-02	ci left: 2.012182e-03	ci right 2.092030e-03	k: 10177	n:4960000
SDK1   4960000 perm   11189 sec   (443 perm/sec)   p_kst 2.051815e-03   p_cons 1.280242e-04   p_joint 1.673387e-05

Joint ci ratio: 4.277034e-01	ci left: 1.330164e-05	ci right 2.070237e-05	k: 83	n:4970000
Cons ci ratio: 1.554281e-01	ci left: 1.180216e-04	ci right 1.381016e-04	k: 635	n:4970000
KS ci ratio: 3.878918e-02	ci left: 2.010923e-03	ci right 2.090665e-03	k: 10191	n:4970000
SDK1   4970000 perm   11231 sec   (443 perm/sec)   p_kst 2.050503e-03   p_cons 1.277666e-04   p_joint 1.670020e-05

Joint ci ratio: 4.251800e-01	ci left: 1.345418e-05	ci right 2.088303e-05	k: 84	n:4980000
Cons ci ratio: 1.550628e-01	ci left: 1.183636e-04	ci right 1.384501e-04	k: 638	n:4980000
KS ci ratio: 3.873408e-02	ci left: 2.012652e-03	ci right 2.092347e-03	k: 10220	n:4980000
SDK1   4980000 perm   11273 sec   (442 perm/sec)   p_kst 2.052209e-03   p_cons 1.281124e-04   p_joint 1.686747e-05

Joint ci ratio: 4.251800e-01	ci left: 1.342721e-05	ci right 2.084118e-05	k: 84	n:4990000
Cons ci ratio: 1.549417e-01	ci left: 1.183190e-04	ci right 1.383808e-04	k: 639	n:4990000
KS ci ratio: 3.870381e-02	ci left: 2.011794e-03	ci right 2.091391e-03	k: 10236	n:4990000
SDK1   4990000 perm   11315 sec   (441 perm/sec)   p_kst 2.051303e-03   p_cons 1.280561e-04   p_joint 1.683367e-05

Joint ci ratio: 4.178697e-01	ci left: 1.393671e-05	ci right 2.146279e-05	k: 87	n:5000000
Cons ci ratio: 1.465892e-01	ci left: 1.325170e-04	ci right 1.536690e-04	k: 714	n:5000000
KS ci ratio: 3.867362e-02	ci left: 2.010939e-03	ci right 2.090439e-03	k: 10252	n:5000000
SDK1   5000000 perm   11357 sec   (440 perm/sec)   p_kst 2.050400e-03   p_cons 1.428000e-04   p_joint 1.740000e-05

Outputting figure to mutsig2_images.part000000000153/SDK1.23_6822_5000000_0.0020504_0.0001428_1.74e-05.png
                gene_name: SDK1
               theta_stop: 0.42 
                    nperm: 5000000 
                     p_ks: 0.0021 
        ci_ks_bounds_left: 0.0020 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.00014 
      ci_cons_bounds_left: 0.00013 
     ci_cons_bounds_right: 0.00015 
                  p_joint: 1.74e-05 
     ci_joint_bounds_left: 1.39e-05 
    ci_joint_bounds_right: 2.15e-05 

Current progress: 8 percent done.
SCN1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
SCN1A   10000 perm   3 sec   (3512 perm/sec)   p_kst 8.657000e-01   p_cons 6.894000e-01   p_joint 9.362000e-01

Outputting figure to mutsig2_images.part000000000153/SCN1A.22_6134_10000_0.8657_0.6894_0.9362.png
                gene_name: SCN1A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 10 percent done.
SCN11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
SCN11A   10000 perm   2 sec   (4111 perm/sec)   p_kst 8.837000e-01   p_cons 1.651000e-01   p_joint 4.969000e-01

Outputting figure to mutsig2_images.part000000000153/SCN11A.18_5480_10000_0.8837_0.1651_0.4969.png
                gene_name: SCN11A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 12 percent done.
SCN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
Cons ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
KS ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
SCN7A   10000 perm   3 sec   (3935 perm/sec)   p_kst 2.659000e-01   p_cons 6.231000e-01   p_joint 4.335000e-01

Outputting figure to mutsig2_images.part000000000153/SCN7A.17_5145_10000_0.2659_0.6231_0.4335.png
                gene_name: SCN7A
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 14 percent done.
SCN9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
Cons ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
SCN9A   10000 perm   3 sec   (3788 perm/sec)   p_kst 2.689000e-01   p_cons 6.929000e-01   p_joint 4.009000e-01

Outputting figure to mutsig2_images.part000000000153/SCN9A.16_6038_10000_0.2689_0.6929_0.4009.png
                gene_name: SCN9A
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 16 percent done.
SCN4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
Cons ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
KS ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
SCN4A   10000 perm   3 sec   (3910 perm/sec)   p_kst 7.206000e-01   p_cons 4.210000e-01   p_joint 7.594000e-01

Outputting figure to mutsig2_images.part000000000153/SCN4A.15_5607_10000_0.7206_0.421_0.7594.png
                gene_name: SCN4A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 18 percent done.
SDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
Cons ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
KS ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
SDK2   10000 perm   3 sec   (3593 perm/sec)   p_kst 4.468000e-01   p_cons 7.946000e-01   p_joint 5.158000e-01

Outputting figure to mutsig2_images.part000000000153/SDK2.11_6699_10000_0.4468_0.7946_0.5158.png
                gene_name: SDK2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 20 percent done.
SCN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
Cons ci ratio: 3.847191e-02	ci left: 4.994504e-01	ci right 5.191442e-01	k: 5093	n:10000
KS ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
SCN5A   10000 perm   2 sec   (4129 perm/sec)   p_kst 2.499000e-01   p_cons 5.093000e-01   p_joint 5.246000e-01

Outputting figure to mutsig2_images.part000000000153/SCN5A.10_6255_10000_0.2499_0.5093_0.5246.png
                gene_name: SCN5A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 22 percent done.
SCN8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
SCN8A   10000 perm   2 sec   (4089 perm/sec)   p_kst 9.070000e-02   p_cons 2.630000e-01   p_joint 1.170000e-01

Joint ci ratio: 7.107820e-02	ci left: 1.272883e-01	ci right 1.367189e-01	k: 2639	n:20000
Cons ci ratio: 4.663517e-02	ci left: 2.549235e-01	ci right 2.671461e-01	k: 5220	n:20000
KS ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
SCN8A   20000 perm   5 sec   (3754 perm/sec)   p_kst 9.225000e-02   p_cons 2.610000e-01   p_joint 1.319500e-01

Outputting figure to mutsig2_images.part000000000153/SCN8A.10_6047_20000_0.09225_0.261_0.13195.png
                gene_name: SCN8A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 24 percent done.
SDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
SDPR   10000 perm   2 sec   (5920 perm/sec)   p_kst 4.620000e-02   p_cons 4.670000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.455428e-01	ci left: 3.244754e-02	ci right 3.758880e-02	k: 699	n:20000
Cons ci ratio: 1.265892e-01	ci left: 4.284699e-02	ci right 4.868599e-02	k: 914	n:20000
KS ci ratio: 1.339685e-01	ci left: 3.829380e-02	ci right 4.384064e-02	k: 820	n:20000
SDPR   20000 perm   4 sec   (5289 perm/sec)   p_kst 4.100000e-02   p_cons 4.570000e-02   p_joint 3.495000e-02

Joint ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
Cons ci ratio: 1.025604e-01	ci left: 4.404707e-02	ci right 4.884126e-02	k: 1392	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
SDPR   30000 perm   6 sec   (5035 perm/sec)   p_kst 4.153333e-02   p_cons 4.640000e-02   p_joint 2.713333e-02

Joint ci ratio: 1.135135e-01	ci left: 2.730436e-02	ci right 3.061450e-02	k: 1157	n:40000
Cons ci ratio: 8.961580e-02	ci left: 4.360061e-02	ci right 4.771567e-02	k: 1825	n:40000
KS ci ratio: 9.461098e-02	ci left: 3.919983e-02	ci right 4.311713e-02	k: 1645	n:40000
SDPR   40000 perm   8 sec   (4864 perm/sec)   p_kst 4.112500e-02   p_cons 4.562500e-02   p_joint 2.892500e-02

Joint ci ratio: 1.068762e-01	ci left: 2.479801e-02	ci right 2.761736e-02	k: 1309	n:50000
Cons ci ratio: 8.051604e-02	ci left: 4.343477e-02	ci right 4.709826e-02	k: 2262	n:50000
KS ci ratio: 8.513112e-02	ci left: 3.894557e-02	ci right 4.242801e-02	k: 2033	n:50000
SDPR   50000 perm   11 sec   (4737 perm/sec)   p_kst 4.066000e-02   p_cons 4.524000e-02   p_joint 2.618000e-02

Joint ci ratio: 9.452081e-02	ci left: 2.654795e-02	ci right 2.919798e-02	k: 1671	n:60000
Cons ci ratio: 7.178172e-02	ci left: 4.564780e-02	ci right 4.906282e-02	k: 2840	n:60000
KS ci ratio: 7.833143e-02	ci left: 3.849504e-02	ci right 4.164965e-02	k: 2403	n:60000
SDPR   60000 perm   13 sec   (4623 perm/sec)   p_kst 4.005000e-02   p_cons 4.733333e-02   p_joint 2.785000e-02

Outputting figure to mutsig2_images.part000000000153/SDPR.7_1286_60000_0.04005_0.047333_0.02785.png
                gene_name: SDPR
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 25 percent done.
SCML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
Cons ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
SCML2   10000 perm   2 sec   (5608 perm/sec)   p_kst 1.232000e-01   p_cons 9.926000e-01   p_joint 2.231000e-01

Joint ci ratio: 4.910306e-02	ci left: 2.356805e-01	ci right 2.475947e-01	k: 4832	n:20000
Cons ci ratio: 2.603928e-03	ci left: 9.899140e-01	ci right 9.925402e-01	k: 19826	n:20000
KS ci ratio: 7.282011e-02	ci left: 1.219226e-01	ci right 1.311863e-01	k: 2530	n:20000
SCML2   20000 perm   4 sec   (5012 perm/sec)   p_kst 1.265000e-01   p_cons 9.913000e-01   p_joint 2.416000e-01

Outputting figure to mutsig2_images.part000000000153/SCML2.6_2159_20000_0.1265_0.9913_0.2416.png
                gene_name: SCML2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 27 percent done.
SCRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
Cons ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
KS ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
SCRN1   10000 perm   2 sec   (5877 perm/sec)   p_kst 4.400000e-01   p_cons 3.511000e-01   p_joint 5.849000e-01

Outputting figure to mutsig2_images.part000000000153/SCRN1.6_1337_10000_0.44_0.3511_0.5849.png
                gene_name: SCRN1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 29 percent done.
SDCCAG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
SDCCAG8   10000 perm   2 sec   (5582 perm/sec)   p_kst 3.194000e-01   p_cons 9.500000e-02   p_joint 2.562000e-01

Joint ci ratio: 4.965868e-02	ci left: 2.316158e-01	ci right 2.434606e-01	k: 4750	n:20000
Cons ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
KS ci ratio: 4.033685e-02	ci left: 3.142328e-01	ci right 3.272194e-01	k: 6414	n:20000
SDCCAG8   20000 perm   4 sec   (5020 perm/sec)   p_kst 3.207000e-01   p_cons 9.415000e-02   p_joint 2.375000e-01

Outputting figure to mutsig2_images.part000000000153/SDCCAG8.6_2214_20000_0.3207_0.09415_0.2375.png
                gene_name: SDCCAG8
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 31 percent done.
SCML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
Cons ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
SCML4   10000 perm   2 sec   (6251 perm/sec)   p_kst 2.418000e-01   p_cons 7.330000e-01   p_joint 5.380000e-01

Outputting figure to mutsig2_images.part000000000153/SCML4.5_1273_10000_0.2418_0.733_0.538.png
                gene_name: SCML4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 33 percent done.
SCRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
Cons ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
KS ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
SCRN3   10000 perm   2 sec   (6019 perm/sec)   p_kst 4.895000e-01   p_cons 9.542000e-01   p_joint 8.813000e-01

Outputting figure to mutsig2_images.part000000000153/SCRN3.5_1303_10000_0.4895_0.9542_0.8813.png
                gene_name: SCRN3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 35 percent done.
SDAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
KS ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
SDAD1   10000 perm   2 sec   (5572 perm/sec)   p_kst 4.902000e-01   p_cons 1.714000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000153/SDAD1.5_2152_10000_0.4902_0.1714_0.3482.png
                gene_name: SDAD1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 37 percent done.
SDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
KS ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
SDC1   10000 perm   2 sec   (6041 perm/sec)   p_kst 1.498000e-01   p_cons 9.990000e-02   p_joint 7.900000e-02

Joint ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
Cons ci ratio: 8.857097e-02	ci left: 8.523565e-02	ci right 9.318425e-02	k: 1783	n:20000
KS ci ratio: 6.670328e-02	ci left: 1.423162e-01	ci right 1.521866e-01	k: 2944	n:20000
SDC1   20000 perm   4 sec   (5433 perm/sec)   p_kst 1.472000e-01   p_cons 8.915000e-02   p_joint 4.435000e-02

Joint ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
Cons ci ratio: 7.269181e-02	ci left: 8.514544e-02	ci right 9.160121e-02	k: 2650	n:30000
KS ci ratio: 5.448137e-02	ci left: 1.431425e-01	ci right 1.511927e-01	k: 4414	n:30000
SDC1   30000 perm   6 sec   (5179 perm/sec)   p_kst 1.471333e-01   p_cons 8.833333e-02   p_joint 4.116667e-02

Joint ci ratio: 1.036854e-01	ci left: 3.270842e-02	ci right 3.630956e-02	k: 1379	n:40000
Cons ci ratio: 6.272632e-02	ci left: 8.615303e-02	ci right 9.175681e-02	k: 3557	n:40000
KS ci ratio: 4.738391e-02	ci left: 1.426272e-01	ci right 1.495743e-01	k: 5843	n:40000
SDC1   40000 perm   8 sec   (5010 perm/sec)   p_kst 1.460750e-01   p_cons 8.892500e-02   p_joint 3.447500e-02

Joint ci ratio: 8.493543e-02	ci left: 3.912189e-02	ci right 4.261167e-02	k: 2042	n:50000
Cons ci ratio: 5.455956e-02	ci left: 9.102108e-02	ci right 9.614622e-02	k: 4678	n:50000
KS ci ratio: 4.231372e-02	ci left: 1.433913e-01	ci right 1.496098e-01	k: 7324	n:50000
SDC1   50000 perm   10 sec   (4881 perm/sec)   p_kst 1.464800e-01   p_cons 9.356000e-02   p_joint 4.084000e-02

Outputting figure to mutsig2_images.part000000000153/SDC1.5_953_50000_0.14648_0.09356_0.04084.png
                gene_name: SDC1
               theta_stop: 0.085 
                    nperm: 50000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 39 percent done.
SDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
Cons ci ratio: 8.085693e-02	ci left: 1.825490e-01	ci right 1.980318e-01	k: 1902	n:10000
KS ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
SDHA   10000 perm   2 sec   (5568 perm/sec)   p_kst 5.819000e-01   p_cons 1.902000e-01   p_joint 4.834000e-01

Outputting figure to mutsig2_images.part000000000153/SDHA.5_2055_10000_0.5819_0.1902_0.4834.png
                gene_name: SDHA
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 41 percent done.
SCIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
Cons ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
KS ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
SCIN   10000 perm   2 sec   (5623 perm/sec)   p_kst 2.240000e-01   p_cons 4.502000e-01   p_joint 7.367000e-01

Outputting figure to mutsig2_images.part000000000153/SCIN.4_2212_10000_0.224_0.4502_0.7367.png
                gene_name: SCIN
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 43 percent done.
SCLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
SCLT1   10000 perm   2 sec   (5658 perm/sec)   p_kst 2.969000e-01   p_cons 1.261000e-01   p_joint 9.350000e-02

Joint ci ratio: 6.964153e-02	ci left: 1.319671e-01	ci right 1.415388e-01	k: 2734	n:20000
Cons ci ratio: 7.348642e-02	ci left: 1.199542e-01	ci right 1.291552e-01	k: 2490	n:20000
KS ci ratio: 4.243159e-02	ci left: 2.927093e-01	ci right 3.054491e-01	k: 5981	n:20000
SCLT1   20000 perm   4 sec   (5098 perm/sec)   p_kst 2.990500e-01   p_cons 1.245000e-01   p_joint 1.367000e-01

Outputting figure to mutsig2_images.part000000000153/SCLT1.4_2151_20000_0.29905_0.1245_0.1367.png
                gene_name: SCLT1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
SDR16C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
KS ci ratio: 2.488138e-02	ci left: 7.038210e-01	ci right 7.216550e-01	k: 7128	n:10000
SDR16C5   10000 perm   2 sec   (6194 perm/sec)   p_kst 7.128000e-01   p_cons 7.444000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDR16C5.4_954_10000_0.7128_0.7444_1.png
                gene_name: SDR16C5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
SEC14L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
SEC14L1   10000 perm   2 sec   (5640 perm/sec)   p_kst 7.410000e-02   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
SEC14L1   20000 perm   4 sec   (5069 perm/sec)   p_kst 7.715000e-02   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
KS ci ratio: 7.773835e-02	ci left: 7.508792e-02	ci right 8.119407e-02	k: 2343	n:30000
SEC14L1   30000 perm   6 sec   (4849 perm/sec)   p_kst 7.810000e-02   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 6.743290e-02	ci left: 7.526711e-02	ci right 8.054437e-02	k: 3115	n:40000
SEC14L1   40000 perm   9 sec   (4698 perm/sec)   p_kst 7.787500e-02   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 6.003856e-02	ci left: 7.619650e-02	ci right 8.093257e-02	k: 3927	n:50000
SEC14L1   50000 perm   11 sec   (4569 perm/sec)   p_kst 7.854000e-02   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 5.543929e-02	ci left: 7.478030e-02	ci right 7.906073e-02	k: 4614	n:60000
SEC14L1   60000 perm   13 sec   (4463 perm/sec)   p_kst 7.690000e-02   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 5.143647e-02	ci left: 7.464024e-02	ci right 7.859494e-02	k: 5362	n:70000
SEC14L1   70000 perm   16 sec   (4372 perm/sec)   p_kst 7.660000e-02   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 4.853221e-02	ci left: 7.356717e-02	ci right 7.723869e-02	k: 6031	n:80000
SEC14L1   80000 perm   19 sec   (4287 perm/sec)   p_kst 7.538750e-02   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 4.592888e-02	ci left: 7.315545e-02	ci right 7.660535e-02	k: 6738	n:90000
SEC14L1   90000 perm   21 sec   (4213 perm/sec)   p_kst 7.486667e-02   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 4.376427e-02	ci left: 7.264230e-02	ci right 7.590244e-02	k: 7426	n:100000
SEC14L1   100000 perm   24 sec   (4142 perm/sec)   p_kst 7.426000e-02   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 4.170749e-02	ci left: 7.278388e-02	ci right 7.589315e-02	k: 8176	n:110000
SEC14L1   110000 perm   27 sec   (4074 perm/sec)   p_kst 7.432727e-02   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 3.987485e-02	ci left: 7.304522e-02	ci right 7.602538e-02	k: 8943	n:120000
SEC14L1   120000 perm   30 sec   (4005 perm/sec)   p_kst 7.452500e-02   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 5.434954e-01	ci left: 2.921124e-04	ci right 5.157803e-04	k: 51	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 3.835403e-02	ci left: 7.294865e-02	ci right 7.580883e-02	k: 9668	n:130000
SEC14L1   130000 perm   33 sec   (3940 perm/sec)   p_kst 7.436923e-02   p_cons 7.692308e-06   p_joint 3.923077e-04

Joint ci ratio: 5.333396e-01	ci left: 2.835884e-04	ci right 4.951519e-04	k: 53	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 3.699683e-02	ci left: 7.286067e-02	ci right 7.561414e-02	k: 10392	n:140000
SEC14L1   140000 perm   36 sec   (3882 perm/sec)   p_kst 7.422857e-02   p_cons 7.142857e-06   p_joint 3.785714e-04

Joint ci ratio: 5.542775e-01	ci left: 2.416793e-04	ci right 4.318479e-04	k: 49	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 3.578985e-02	ci left: 7.272647e-02	ci right 7.538335e-02	k: 11107	n:150000
SEC14L1   150000 perm   39 sec   (3825 perm/sec)   p_kst 7.404667e-02   p_cons 6.666667e-06   p_joint 3.266667e-04

Joint ci ratio: 5.542834e-01	ci left: 2.265738e-04	ci right 4.048588e-04	k: 49	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 3.468110e-02	ci left: 7.265995e-02	ci right 7.523052e-02	k: 11830	n:160000
SEC14L1   160000 perm   42 sec   (3769 perm/sec)   p_kst 7.393750e-02   p_cons 6.250000e-06   p_joint 3.062500e-04

Joint ci ratio: 5.778926e-01	ci left: 1.930846e-04	ci right 3.541814e-04	k: 45	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 3.313937e-02	ci left: 7.478546e-02	ci right 7.731137e-02	k: 12927	n:170000
SEC14L1   170000 perm   46 sec   (3714 perm/sec)   p_kst 7.604118e-02   p_cons 5.882353e-06   p_joint 2.647059e-04

Joint ci ratio: 5.542932e-01	ci left: 2.013981e-04	ci right 3.598764e-04	k: 49	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 3.217068e-02	ci left: 7.497286e-02	ci right 7.742970e-02	k: 13715	n:180000
SEC14L1   180000 perm   49 sec   (3662 perm/sec)   p_kst 7.619444e-02   p_cons 5.555556e-06   p_joint 2.722222e-04

Joint ci ratio: 5.435304e-01	ci left: 1.998634e-04	ci right 3.529092e-04	k: 51	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 3.135369e-02	ci left: 7.482274e-02	ci right 7.721127e-02	k: 14442	n:190000
SEC14L1   190000 perm   53 sec   (3611 perm/sec)   p_kst 7.601053e-02   p_cons 5.263158e-06   p_joint 2.684211e-04

Joint ci ratio: 5.842919e-01	ci left: 1.598567e-04	ci right 2.953286e-04	k: 44	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 3.057086e-02	ci left: 7.480255e-02	ci right 7.712976e-02	k: 15192	n:200000
SEC14L1   200000 perm   56 sec   (3562 perm/sec)   p_kst 7.596000e-02   p_cons 5.000000e-06   p_joint 2.200000e-04

Joint ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.984691e-02	ci left: 7.477077e-02	ci right 7.704095e-02	k: 15939	n:210000
SEC14L1   210000 perm   60 sec   (3511 perm/sec)   p_kst 7.590000e-02   p_cons 4.761905e-06   p_joint 2.238095e-04

Joint ci ratio: 5.717284e-01	ci left: 1.530848e-04	ci right 2.788882e-04	k: 46	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.914280e-02	ci left: 7.488244e-02	ci right 7.710148e-02	k: 16717	n:220000
SEC14L1   220000 perm   64 sec   (3463 perm/sec)   p_kst 7.598636e-02   p_cons 4.545455e-06   p_joint 2.090909e-04

Joint ci ratio: 5.657430e-01	ci left: 1.501508e-04	ci right 2.717301e-04	k: 47	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.849684e-02	ci left: 7.493314e-02	ci right 7.710365e-02	k: 17483	n:230000
SEC14L1   230000 perm   67 sec   (3417 perm/sec)   p_kst 7.601304e-02   p_cons 4.347826e-06   p_joint 2.043478e-04

Joint ci ratio: 5.909068e-01	ci left: 1.296667e-04	ci right 2.413288e-04	k: 43	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.787715e-02	ci left: 7.505463e-02	ci right 7.718062e-02	k: 18267	n:240000
SEC14L1   240000 perm   71 sec   (3373 perm/sec)   p_kst 7.611250e-02   p_cons 4.166667e-06   p_joint 1.791667e-04

Joint ci ratio: 6.121497e-01	ci left: 1.143087e-04	ci right 2.178683e-04	k: 40	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.732726e-02	ci left: 7.500787e-02	ci right 7.708997e-02	k: 19011	n:250000
SEC14L1   250000 perm   75 sec   (3329 perm/sec)   p_kst 7.604400e-02   p_cons 4.000000e-06   p_joint 1.600000e-04

Joint ci ratio: 6.048191e-01	ci left: 1.131650e-04	ci right 2.139214e-04	k: 41	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.677204e-02	ci left: 7.515622e-02	ci right 7.719940e-02	k: 19805	n:260000
SEC14L1   260000 perm   79 sec   (3285 perm/sec)   p_kst 7.617308e-02   p_cons 3.846154e-06   p_joint 1.576923e-04

Joint ci ratio: 5.779222e-01	ci left: 1.215703e-04	ci right 2.230068e-04	k: 45	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.645988e-02	ci left: 7.418223e-02	ci right 7.617505e-02	k: 20297	n:270000
SEC14L1   270000 perm   83 sec   (3245 perm/sec)   p_kst 7.517407e-02   p_cons 3.703704e-06   p_joint 1.666667e-04

Joint ci ratio: 7.278867e-01	ci left: 6.645027e-05	ci right 1.445246e-04	k: 28	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.595828e-02	ci left: 7.433233e-02	ci right 7.629076e-02	k: 21086	n:280000
SEC14L1   280000 perm   87 sec   (3205 perm/sec)   p_kst 7.530714e-02   p_cons 3.571429e-06   p_joint 1.000000e-04

Joint ci ratio: 7.687395e-01	ci left: 5.578931e-05	ci right 1.272558e-04	k: 25	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.552140e-02	ci left: 7.427015e-02	ci right 7.619353e-02	k: 21816	n:290000
SEC14L1   290000 perm   92 sec   (3168 perm/sec)   p_kst 7.522759e-02   p_cons 3.448276e-06   p_joint 8.620690e-05

Joint ci ratio: 7.687407e-01	ci left: 5.392964e-05	ci right 1.230140e-04	k: 25	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.508182e-02	ci left: 7.434494e-02	ci right 7.623661e-02	k: 22586	n:300000
SEC14L1   300000 perm   96 sec   (3131 perm/sec)   p_kst 7.528667e-02   p_cons 3.333333e-06   p_joint 8.333333e-05

Joint ci ratio: 9.507120e-01	ci left: 2.950151e-05	ci right 8.381477e-05	k: 16	n:310000
Cons ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
KS ci ratio: 2.467390e-02	ci left: 7.436064e-02	ci right 7.622150e-02	k: 23339	n:310000
SEC14L1   310000 perm   100 sec   (3095 perm/sec)   p_kst 7.528710e-02   p_cons 6.451613e-06   p_joint 5.161290e-05

Joint ci ratio: 9.239254e-01	ci left: 3.094757e-05	ci right 8.505691e-05	k: 17	n:320000
Cons ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
KS ci ratio: 2.430108e-02	ci left: 7.428547e-02	ci right 7.611598e-02	k: 24063	n:320000
SEC14L1   320000 perm   105 sec   (3059 perm/sec)   p_kst 7.519687e-02   p_cons 6.250000e-06   p_joint 5.312500e-05

Joint ci ratio: 9.239263e-01	ci left: 3.000975e-05	ci right 8.247947e-05	k: 17	n:330000
Cons ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
KS ci ratio: 2.392015e-02	ci left: 7.435671e-02	ci right 7.615985e-02	k: 24834	n:330000
SEC14L1   330000 perm   109 sec   (3025 perm/sec)   p_kst 7.525455e-02   p_cons 6.060606e-06   p_joint 5.151515e-05

Joint ci ratio: 9.799755e-01	ci left: 2.469252e-05	ci right 7.276431e-05	k: 15	n:340000
Cons ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
KS ci ratio: 2.357501e-02	ci left: 7.431573e-02	ci right 7.609152e-02	k: 25568	n:340000
SEC14L1   340000 perm   114 sec   (2977 perm/sec)   p_kst 7.520000e-02   p_cons 5.882353e-06   p_joint 4.411765e-05

Joint ci ratio: 9.507152e-01	ci left: 2.612988e-05	ci right 7.423608e-05	k: 16	n:350000
Cons ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
KS ci ratio: 2.326784e-02	ci left: 7.413802e-02	ci right 7.588617e-02	k: 26253	n:350000
SEC14L1   350000 perm   119 sec   (2941 perm/sec)   p_kst 7.500857e-02   p_cons 5.714286e-06   p_joint 4.571429e-05

Joint ci ratio: 9.239285e-01	ci left: 2.750892e-05	ci right 7.560628e-05	k: 17	n:360000
Cons ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
KS ci ratio: 2.295118e-02	ci left: 7.409743e-02	ci right 7.582053e-02	k: 26984	n:360000
SEC14L1   360000 perm   124 sec   (2908 perm/sec)   p_kst 7.495556e-02   p_cons 5.555556e-06   p_joint 4.722222e-05

Joint ci ratio: 8.992854e-01	ci left: 2.883252e-05	ci right 7.688475e-05	k: 18	n:370000
Cons ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
KS ci ratio: 2.263696e-02	ci left: 7.412103e-02	ci right 7.582077e-02	k: 27738	n:370000
SEC14L1   370000 perm   129 sec   (2874 perm/sec)   p_kst 7.496757e-02   p_cons 5.405405e-06   p_joint 4.864865e-05

Joint ci ratio: 8.992860e-01	ci left: 2.807376e-05	ci right 7.486150e-05	k: 18	n:380000
Cons ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
KS ci ratio: 2.235991e-02	ci left: 7.399169e-02	ci right 7.566743e-02	k: 28434	n:380000
SEC14L1   380000 perm   134 sec   (2841 perm/sec)   p_kst 7.482632e-02   p_cons 5.263158e-06   p_joint 4.736842e-05

Joint ci ratio: 8.765150e-01	ci left: 2.933163e-05	ci right 7.607807e-05	k: 19	n:390000
Cons ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
KS ci ratio: 2.208131e-02	ci left: 7.394054e-02	ci right 7.559399e-02	k: 29158	n:390000
SEC14L1   390000 perm   139 sec   (2809 perm/sec)   p_kst 7.476410e-02   p_cons 5.128205e-06   p_joint 4.871795e-05

Joint ci ratio: 1.087193e+00	ci left: 1.550153e-05	ci right 5.240338e-05	k: 12	n:400000
Cons ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
KS ci ratio: 2.179082e-02	ci left: 7.403136e-02	ci right 7.566480e-02	k: 29938	n:400000
SEC14L1   400000 perm   144 sec   (2777 perm/sec)   p_kst 7.484500e-02   p_cons 5.000000e-06   p_joint 3.000000e-05

Joint ci ratio: 1.131589e+00	ci left: 1.339315e-05	ci right 4.800446e-05	k: 11	n:410000
Cons ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
KS ci ratio: 2.152703e-02	ci left: 7.401839e-02	ci right 7.563153e-02	k: 30677	n:410000
SEC14L1   410000 perm   149 sec   (2747 perm/sec)   p_kst 7.482195e-02   p_cons 4.878049e-06   p_joint 2.682927e-05

Joint ci ratio: 1.131589e+00	ci left: 1.307426e-05	ci right 4.686151e-05	k: 11	n:420000
Cons ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
KS ci ratio: 2.126711e-02	ci left: 7.404169e-02	ci right 7.563561e-02	k: 31431	n:420000
SEC14L1   420000 perm   155 sec   (2717 perm/sec)   p_kst 7.483571e-02   p_cons 4.761905e-06   p_joint 2.619048e-05

Joint ci ratio: 1.087195e+00	ci left: 1.442002e-05	ci right 4.874736e-05	k: 12	n:430000
Cons ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
KS ci ratio: 2.100897e-02	ci left: 7.411262e-02	ci right 7.568847e-02	k: 32206	n:430000
SEC14L1   430000 perm   160 sec   (2687 perm/sec)   p_kst 7.489767e-02   p_cons 4.651163e-06   p_joint 2.790698e-05

Joint ci ratio: 1.047646e+00	ci left: 1.573180e-05	ci right 5.052310e-05	k: 13	n:440000
Cons ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
KS ci ratio: 2.076308e-02	ci left: 7.416007e-02	ci right 7.571826e-02	k: 32972	n:440000
SEC14L1   440000 perm   166 sec   (2658 perm/sec)   p_kst 7.493636e-02   p_cons 4.545455e-06   p_joint 2.954545e-05

Joint ci ratio: 1.047647e+00	ci left: 1.538220e-05	ci right 4.940037e-05	k: 13	n:450000
Cons ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
KS ci ratio: 2.054043e-02	ci left: 7.410600e-02	ci right 7.564615e-02	k: 33693	n:450000
SEC14L1   450000 perm   171 sec   (2631 perm/sec)   p_kst 7.487333e-02   p_cons 4.444444e-06   p_joint 2.888889e-05

Joint ci ratio: 9.507210e-01	ci left: 1.988139e-05	ci right 5.648416e-05	k: 16	n:460000
Cons ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
KS ci ratio: 2.032351e-02	ci left: 7.406301e-02	ci right 7.558583e-02	k: 34418	n:460000
SEC14L1   460000 perm   177 sec   (2602 perm/sec)   p_kst 7.482174e-02   p_cons 4.347826e-06   p_joint 3.478261e-05

Joint ci ratio: 9.507214e-01	ci left: 1.945838e-05	ci right 5.528239e-05	k: 16	n:470000
Cons ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
KS ci ratio: 2.011920e-02	ci left: 7.398170e-02	ci right 7.548738e-02	k: 35124	n:470000
SEC14L1   470000 perm   182 sec   (2577 perm/sec)   p_kst 7.473191e-02   p_cons 4.255319e-06   p_joint 3.404255e-05

Joint ci ratio: 9.507218e-01	ci left: 1.905300e-05	ci right 5.413068e-05	k: 16	n:480000
Cons ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
KS ci ratio: 1.991313e-02	ci left: 7.395777e-02	ci right 7.544737e-02	k: 35856	n:480000
SEC14L1   480000 perm   188 sec   (2552 perm/sec)   p_kst 7.470000e-02   p_cons 4.166667e-06   p_joint 3.333333e-05

Joint ci ratio: 9.507222e-01	ci left: 1.866416e-05	ci right 5.302599e-05	k: 16	n:490000
Cons ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
KS ci ratio: 1.971763e-02	ci left: 7.390442e-02	ci right 7.537816e-02	k: 36573	n:490000
SEC14L1   490000 perm   194 sec   (2525 perm/sec)   p_kst 7.463878e-02   p_cons 4.081633e-06   p_joint 3.265306e-05

Joint ci ratio: 9.507225e-01	ci left: 1.829087e-05	ci right 5.196548e-05	k: 16	n:500000
Cons ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
KS ci ratio: 1.952098e-02	ci left: 7.390106e-02	ci right 7.535987e-02	k: 37314	n:500000
SEC14L1   500000 perm   200 sec   (2499 perm/sec)   p_kst 7.462800e-02   p_cons 4.000000e-06   p_joint 3.200000e-05

Joint ci ratio: 9.507229e-01	ci left: 1.793223e-05	ci right 5.094656e-05	k: 16	n:510000
Cons ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
KS ci ratio: 1.933203e-02	ci left: 7.388424e-02	ci right 7.532844e-02	k: 38048	n:510000
SEC14L1   510000 perm   206 sec   (2474 perm/sec)   p_kst 7.460392e-02   p_cons 3.921569e-06   p_joint 3.137255e-05

Joint ci ratio: 9.507232e-01	ci left: 1.758737e-05	ci right 4.996682e-05	k: 16	n:520000
Cons ci ratio: 2.263204e+00	ci left: 4.657874e-07	ci right 1.389356e-05	k: 2	n:520000
KS ci ratio: 1.914739e-02	ci left: 7.387579e-02	ci right 7.530588e-02	k: 38786	n:520000
SEC14L1   520000 perm   212 sec   (2449 perm/sec)   p_kst 7.458846e-02   p_cons 3.846154e-06   p_joint 3.076923e-05

Joint ci ratio: 9.239363e-01	ci left: 1.868525e-05	ci right 5.135544e-05	k: 17	n:530000
Cons ci ratio: 2.263205e+00	ci left: 4.569990e-07	ci right 1.363142e-05	k: 2	n:530000
KS ci ratio: 1.897132e-02	ci left: 7.384330e-02	ci right 7.525947e-02	k: 39511	n:530000
SEC14L1   530000 perm   218 sec   (2426 perm/sec)   p_kst 7.454906e-02   p_cons 3.773585e-06   p_joint 3.207547e-05

Joint ci ratio: 8.992930e-01	ci left: 1.975556e-05	ci right 5.268053e-05	k: 18	n:540000
Cons ci ratio: 2.263205e+00	ci left: 4.485360e-07	ci right 1.337899e-05	k: 2	n:540000
KS ci ratio: 1.879446e-02	ci left: 7.385263e-02	ci right 7.525564e-02	k: 40258	n:540000
SEC14L1   540000 perm   225 sec   (2401 perm/sec)   p_kst 7.455185e-02   p_cons 3.703704e-06   p_joint 3.333333e-05

Joint ci ratio: 9.507241e-01	ci left: 1.662806e-05	ci right 4.724139e-05	k: 16	n:550000
Cons ci ratio: 2.263205e+00	ci left: 4.403808e-07	ci right 1.313573e-05	k: 2	n:550000
KS ci ratio: 1.862540e-02	ci left: 7.383996e-02	ci right 7.522998e-02	k: 40993	n:550000
SEC14L1   550000 perm   231 sec   (2378 perm/sec)   p_kst 7.453273e-02   p_cons 3.636364e-06   p_joint 2.909091e-05

Joint ci ratio: 9.507244e-01	ci left: 1.633113e-05	ci right 4.639780e-05	k: 16	n:560000
Cons ci ratio: 2.263205e+00	ci left: 4.325169e-07	ci right 1.290117e-05	k: 2	n:560000
KS ci ratio: 1.846968e-02	ci left: 7.376201e-02	ci right 7.513883e-02	k: 41691	n:560000
SEC14L1   560000 perm   238 sec   (2357 perm/sec)   p_kst 7.444821e-02   p_cons 3.571429e-06   p_joint 2.857143e-05

Joint ci ratio: 9.239375e-01	ci left: 1.737400e-05	ci right 4.775158e-05	k: 17	n:570000
Cons ci ratio: 2.263205e+00	ci left: 4.249288e-07	ci right 1.267483e-05	k: 2	n:570000
KS ci ratio: 1.830706e-02	ci left: 7.376720e-02	ci right 7.513186e-02	k: 42435	n:570000
SEC14L1   570000 perm   244 sec   (2336 perm/sec)   p_kst 7.444737e-02   p_cons 3.508772e-06   p_joint 2.982456e-05

Joint ci ratio: 9.239377e-01	ci left: 1.707445e-05	ci right 4.692829e-05	k: 17	n:580000
Cons ci ratio: 2.263205e+00	ci left: 4.176025e-07	ci right 1.245630e-05	k: 2	n:580000
KS ci ratio: 1.815094e-02	ci left: 7.375510e-02	ci right 7.510778e-02	k: 43169	n:580000
SEC14L1   580000 perm   250 sec   (2317 perm/sec)   p_kst 7.442931e-02   p_cons 3.448276e-06   p_joint 2.931034e-05

Joint ci ratio: 9.239380e-01	ci left: 1.678505e-05	ci right 4.613290e-05	k: 17	n:590000
Cons ci ratio: 2.263205e+00	ci left: 4.105245e-07	ci right 1.224518e-05	k: 2	n:590000
KS ci ratio: 1.799011e-02	ci left: 7.380928e-02	ci right 7.515083e-02	k: 43942	n:590000
SEC14L1   590000 perm   257 sec   (2298 perm/sec)   p_kst 7.447797e-02   p_cons 3.389831e-06   p_joint 2.881356e-05

Joint ci ratio: 8.992947e-01	ci left: 1.778000e-05	ci right 4.741252e-05	k: 18	n:600000
Cons ci ratio: 2.263206e+00	ci left: 4.036824e-07	ci right 1.204109e-05	k: 2	n:600000
KS ci ratio: 1.784146e-02	ci left: 7.380029e-02	ci right 7.513049e-02	k: 44678	n:600000
SEC14L1   600000 perm   263 sec   (2279 perm/sec)   p_kst 7.446333e-02   p_cons 3.333333e-06   p_joint 3.000000e-05

Joint ci ratio: 1.087200e+00	ci left: 1.016492e-05	ci right 3.436300e-05	k: 12	n:610000
Cons ci ratio: 2.263206e+00	ci left: 3.970646e-07	ci right 1.184370e-05	k: 2	n:610000
KS ci ratio: 1.769539e-02	ci left: 7.379981e-02	ci right 7.511899e-02	k: 45419	n:610000
SEC14L1   610000 perm   270 sec   (2261 perm/sec)   p_kst 7.445738e-02   p_cons 3.278689e-06   p_joint 1.967213e-05

Joint ci ratio: 1.087200e+00	ci left: 1.000097e-05	ci right 3.380876e-05	k: 12	n:620000
Cons ci ratio: 2.263206e+00	ci left: 3.906604e-07	ci right 1.165267e-05	k: 2	n:620000
KS ci ratio: 1.755469e-02	ci left: 7.378492e-02	ci right 7.509325e-02	k: 46151	n:620000
SEC14L1   620000 perm   276 sec   (2243 perm/sec)   p_kst 7.443710e-02   p_cons 3.225806e-06   p_joint 1.935484e-05

Joint ci ratio: 1.087200e+00	ci left: 9.842220e-06	ci right 3.327212e-05	k: 12	n:630000
Cons ci ratio: 2.263206e+00	ci left: 3.844594e-07	ci right 1.146771e-05	k: 2	n:630000
KS ci ratio: 1.741128e-02	ci left: 7.381798e-02	ci right 7.511609e-02	k: 46913	n:630000
SEC14L1   630000 perm   283 sec   (2225 perm/sec)   p_kst 7.446508e-02   p_cons 3.174603e-06   p_joint 1.904762e-05

Joint ci ratio: 1.087200e+00	ci left: 9.688435e-06	ci right 3.275225e-05	k: 12	n:640000
Cons ci ratio: 2.263206e+00	ci left: 3.784522e-07	ci right 1.128853e-05	k: 2	n:640000
KS ci ratio: 1.728151e-02	ci left: 7.376912e-02	ci right 7.505661e-02	k: 47623	n:640000
SEC14L1   640000 perm   290 sec   (2206 perm/sec)   p_kst 7.441094e-02   p_cons 3.125000e-06   p_joint 1.875000e-05

Joint ci ratio: 1.087201e+00	ci left: 9.539382e-06	ci right 3.224837e-05	k: 12	n:650000
Cons ci ratio: 2.263206e+00	ci left: 3.726299e-07	ci right 1.111486e-05	k: 2	n:650000
KS ci ratio: 1.715766e-02	ci left: 7.369728e-02	ci right 7.497421e-02	k: 48317	n:650000
SEC14L1   650000 perm   297 sec   (2189 perm/sec)   p_kst 7.433385e-02   p_cons 3.076923e-06   p_joint 1.846154e-05

Joint ci ratio: 1.047652e+00	ci left: 1.048785e-05	ci right 3.368218e-05	k: 13	n:660000
Cons ci ratio: 2.263206e+00	ci left: 3.669840e-07	ci right 1.094645e-05	k: 2	n:660000
KS ci ratio: 1.704001e-02	ci left: 7.359898e-02	ci right 7.486537e-02	k: 48992	n:660000
SEC14L1   660000 perm   304 sec   (2173 perm/sec)   p_kst 7.423030e-02   p_cons 3.030303e-06   p_joint 1.969697e-05

Joint ci ratio: 1.047652e+00	ci left: 1.033131e-05	ci right 3.317947e-05	k: 13	n:670000
Cons ci ratio: 2.263206e+00	ci left: 3.615066e-07	ci right 1.078307e-05	k: 2	n:670000
KS ci ratio: 1.690509e-02	ci left: 7.366272e-02	ci right 7.492007e-02	k: 49774	n:670000
SEC14L1   670000 perm   311 sec   (2156 perm/sec)   p_kst 7.428955e-02   p_cons 2.985075e-06   p_joint 1.940299e-05

Joint ci ratio: 1.047653e+00	ci left: 1.017938e-05	ci right 3.269154e-05	k: 13	n:680000
Cons ci ratio: 2.263206e+00	ci left: 3.561903e-07	ci right 1.062450e-05	k: 2	n:680000
KS ci ratio: 1.677063e-02	ci left: 7.374659e-02	ci right 7.499527e-02	k: 50571	n:680000
SEC14L1   680000 perm   318 sec   (2139 perm/sec)   p_kst 7.436912e-02   p_cons 2.941176e-06   p_joint 1.911765e-05

Joint ci ratio: 1.047653e+00	ci left: 1.003185e-05	ci right 3.221775e-05	k: 13	n:690000
Cons ci ratio: 2.263206e+00	ci left: 3.510281e-07	ci right 1.047052e-05	k: 2	n:690000
KS ci ratio: 1.664808e-02	ci left: 7.375589e-02	ci right 7.499551e-02	k: 51318	n:690000
SEC14L1   690000 perm   325 sec   (2123 perm/sec)   p_kst 7.437391e-02   p_cons 2.898551e-06   p_joint 1.884058e-05

Joint ci ratio: 1.047653e+00	ci left: 9.888539e-06	ci right 3.175750e-05	k: 13	n:700000
Cons ci ratio: 2.263207e+00	ci left: 3.460134e-07	ci right 1.032094e-05	k: 2	n:700000
KS ci ratio: 1.653573e-02	ci left: 7.370233e-02	ci right 7.493262e-02	k: 52021	n:700000
SEC14L1   700000 perm   332 sec   (2107 perm/sec)   p_kst 7.431571e-02   p_cons 2.857143e-06   p_joint 1.857143e-05

Joint ci ratio: 1.047653e+00	ci left: 9.749264e-06	ci right 3.131021e-05	k: 13	n:710000
Cons ci ratio: 2.263207e+00	ci left: 3.411400e-07	ci right 1.017558e-05	k: 2	n:710000
KS ci ratio: 1.641621e-02	ci left: 7.372889e-02	ci right 7.495064e-02	k: 52780	n:710000
SEC14L1   710000 perm   340 sec   (2091 perm/sec)   p_kst 7.433803e-02   p_cons 2.816901e-06   p_joint 1.830986e-05

Joint ci ratio: 1.047653e+00	ci left: 9.613857e-06	ci right 3.087535e-05	k: 13	n:720000
Cons ci ratio: 2.263207e+00	ci left: 3.364020e-07	ci right 1.003425e-05	k: 2	n:720000
KS ci ratio: 1.629711e-02	ci left: 7.377273e-02	ci right 7.498625e-02	k: 53552	n:720000
SEC14L1   720000 perm   347 sec   (2074 perm/sec)   p_kst 7.437778e-02   p_cons 2.777778e-06   p_joint 1.805556e-05

Joint ci ratio: 1.047653e+00	ci left: 9.482160e-06	ci right 3.045240e-05	k: 13	n:730000
Cons ci ratio: 2.263207e+00	ci left: 3.317937e-07	ci right 9.896797e-06	k: 2	n:730000
KS ci ratio: 1.618716e-02	ci left: 7.375944e-02	ci right 7.496449e-02	k: 54283	n:730000
SEC14L1   730000 perm   355 sec   (2059 perm/sec)   p_kst 7.436027e-02   p_cons 2.739726e-06   p_joint 1.780822e-05

Joint ci ratio: 1.047653e+00	ci left: 9.354022e-06	ci right 3.004089e-05	k: 13	n:740000
Cons ci ratio: 2.263207e+00	ci left: 3.273100e-07	ci right 9.763057e-06	k: 2	n:740000
KS ci ratio: 1.607861e-02	ci left: 7.375327e-02	ci right 7.495006e-02	k: 55019	n:740000
SEC14L1   740000 perm   362 sec   (2043 perm/sec)   p_kst 7.435000e-02   p_cons 2.702703e-06   p_joint 1.756757e-05

Joint ci ratio: 1.012129e+00	ci left: 1.020528e-05	ci right 3.131930e-05	k: 14	n:750000
Cons ci ratio: 2.263207e+00	ci left: 3.229459e-07	ci right 9.632883e-06	k: 2	n:750000
KS ci ratio: 1.597548e-02	ci left: 7.371940e-02	ci right 7.490789e-02	k: 55734	n:750000
SEC14L1   750000 perm   370 sec   (2028 perm/sec)   p_kst 7.431200e-02   p_cons 2.666667e-06   p_joint 1.866667e-05

Joint ci ratio: 1.012129e+00	ci left: 1.007100e-05	ci right 3.090720e-05	k: 14	n:760000
Cons ci ratio: 2.263207e+00	ci left: 3.186966e-07	ci right 9.506135e-06	k: 2	n:760000
KS ci ratio: 1.586929e-02	ci left: 7.372970e-02	ci right 7.491039e-02	k: 56482	n:760000
SEC14L1   760000 perm   378 sec   (2013 perm/sec)   p_kst 7.431842e-02   p_cons 2.631579e-06   p_joint 1.842105e-05

Joint ci ratio: 1.012129e+00	ci left: 9.940204e-06	ci right 3.050581e-05	k: 14	n:770000
Cons ci ratio: 2.263207e+00	ci left: 3.145577e-07	ci right 9.382679e-06	k: 2	n:770000
KS ci ratio: 1.575835e-02	ci left: 7.379929e-02	ci right 7.497275e-02	k: 57276	n:770000
SEC14L1   770000 perm   385 sec   (1999 perm/sec)   p_kst 7.438442e-02   p_cons 2.597403e-06   p_joint 1.818182e-05

Joint ci ratio: 7.687619e-01	ci left: 2.074200e-05	ci right 4.731365e-05	k: 25	n:780000
Cons ci ratio: 2.263207e+00	ci left: 3.105249e-07	ci right 9.262389e-06	k: 2	n:780000
KS ci ratio: 1.575163e-02	ci left: 7.298059e-02	ci right 7.414053e-02	k: 57376	n:780000
SEC14L1   780000 perm   393 sec   (1984 perm/sec)   p_kst 7.355897e-02   p_cons 2.564103e-06   p_joint 3.205128e-05

Joint ci ratio: 7.687621e-01	ci left: 2.047945e-05	ci right 4.671475e-05	k: 25	n:790000
Cons ci ratio: 2.263207e+00	ci left: 3.065942e-07	ci right 9.145144e-06	k: 2	n:790000
KS ci ratio: 1.565272e-02	ci left: 7.297468e-02	ci right 7.412718e-02	k: 58104	n:790000
SEC14L1   790000 perm   401 sec   (1971 perm/sec)   p_kst 7.354937e-02   p_cons 2.531646e-06   p_joint 3.164557e-05

Joint ci ratio: 8.001541e-01	ci left: 1.822512e-05	ci right 4.313881e-05	k: 23	n:800000
Cons ci ratio: 2.263207e+00	ci left: 3.027617e-07	ci right 9.030830e-06	k: 2	n:800000
KS ci ratio: 1.555623e-02	ci left: 7.296396e-02	ci right 7.410913e-02	k: 58828	n:800000
SEC14L1   800000 perm   409 sec   (1956 perm/sec)   p_kst 7.353500e-02   p_cons 2.500000e-06   p_joint 2.875000e-05

Joint ci ratio: 8.001543e-01	ci left: 1.800012e-05	ci right 4.260623e-05	k: 23	n:810000
Cons ci ratio: 2.263207e+00	ci left: 2.990239e-07	ci right 8.919339e-06	k: 2	n:810000
KS ci ratio: 1.546122e-02	ci left: 7.295599e-02	ci right 7.409398e-02	k: 59554	n:810000
SEC14L1   810000 perm   417 sec   (1943 perm/sec)   p_kst 7.352346e-02   p_cons 2.469136e-06   p_joint 2.839506e-05

Joint ci ratio: 8.001545e-01	ci left: 1.778060e-05	ci right 4.208665e-05	k: 23	n:820000
Cons ci ratio: 2.263208e+00	ci left: 2.953773e-07	ci right 8.810567e-06	k: 2	n:820000
KS ci ratio: 1.537233e-02	ci left: 7.290935e-02	ci right 7.404001e-02	k: 60248	n:820000
SEC14L1   820000 perm   425 sec   (1929 perm/sec)   p_kst 7.347317e-02   p_cons 2.439024e-06   p_joint 2.804878e-05

Joint ci ratio: 7.839877e-01	ci left: 1.852690e-05	ci right 4.302391e-05	k: 24	n:830000
Cons ci ratio: 2.263208e+00	ci left: 2.918185e-07	ci right 8.704416e-06	k: 2	n:830000
KS ci ratio: 1.528157e-02	ci left: 7.289386e-02	ci right 7.401755e-02	k: 60967	n:830000
SEC14L1   830000 perm   433 sec   (1915 perm/sec)   p_kst 7.345422e-02   p_cons 2.409639e-06   p_joint 2.891566e-05

Joint ci ratio: 7.687629e-01	ci left: 1.926043e-05	ci right 4.393413e-05	k: 25	n:840000
Cons ci ratio: 2.263208e+00	ci left: 2.883445e-07	ci right 8.600792e-06	k: 2	n:840000
KS ci ratio: 1.518815e-02	ci left: 7.291672e-02	ci right 7.403384e-02	k: 61718	n:840000
SEC14L1   840000 perm   442 sec   (1902 perm/sec)   p_kst 7.347381e-02   p_cons 2.380952e-06   p_joint 2.976190e-05

Joint ci ratio: 7.543919e-01	ci left: 1.998135e-05	ci right 4.481853e-05	k: 26	n:850000
Cons ci ratio: 2.263208e+00	ci left: 2.849522e-07	ci right 8.499606e-06	k: 2	n:850000
KS ci ratio: 1.509891e-02	ci left: 7.291680e-02	ci right 7.402729e-02	k: 62450	n:850000
SEC14L1   850000 perm   450 sec   (1889 perm/sec)   p_kst 7.347059e-02   p_cons 2.352941e-06   p_joint 3.058824e-05

Joint ci ratio: 7.407979e-01	ci left: 2.068983e-05	ci right 4.567826e-05	k: 27	n:860000
Cons ci ratio: 2.263208e+00	ci left: 2.816388e-07	ci right 8.400774e-06	k: 2	n:860000
KS ci ratio: 1.501711e-02	ci left: 7.286358e-02	ci right 7.396720e-02	k: 63136	n:860000
SEC14L1   860000 perm   458 sec   (1876 perm/sec)   p_kst 7.341395e-02   p_cons 2.325581e-06   p_joint 3.139535e-05

Joint ci ratio: 7.407980e-01	ci left: 2.045202e-05	ci right 4.515322e-05	k: 27	n:870000
Cons ci ratio: 2.263208e+00	ci left: 2.784016e-07	ci right 8.304214e-06	k: 2	n:870000
KS ci ratio: 1.493462e-02	ci left: 7.282993e-02	ci right 7.392693e-02	k: 63838	n:870000
SEC14L1   870000 perm   467 sec   (1863 perm/sec)   p_kst 7.337701e-02   p_cons 2.298851e-06   p_joint 3.103448e-05

Joint ci ratio: 7.279133e-01	ci left: 2.114305e-05	ci right 4.598581e-05	k: 28	n:880000
Cons ci ratio: 2.263208e+00	ci left: 2.752379e-07	ci right 8.209848e-06	k: 2	n:880000
KS ci ratio: 1.484924e-02	ci left: 7.283557e-02	ci right 7.392633e-02	k: 64574	n:880000
SEC14L1   880000 perm   476 sec   (1851 perm/sec)   p_kst 7.337955e-02   p_cons 2.272727e-06   p_joint 3.181818e-05

Joint ci ratio: 7.279135e-01	ci left: 2.090549e-05	ci right 4.546912e-05	k: 28	n:890000
Cons ci ratio: 2.263208e+00	ci left: 2.721454e-07	ci right 8.117603e-06	k: 2	n:890000
KS ci ratio: 1.476263e-02	ci left: 7.286574e-02	ci right 7.395053e-02	k: 65332	n:890000
SEC14L1   890000 perm   484 sec   (1838 perm/sec)   p_kst 7.340674e-02   p_cons 2.247191e-06   p_joint 3.146067e-05

Joint ci ratio: 7.279136e-01	ci left: 2.067320e-05	ci right 4.496391e-05	k: 28	n:900000
Cons ci ratio: 2.263208e+00	ci left: 2.691215e-07	ci right 8.027407e-06	k: 2	n:900000
KS ci ratio: 1.467704e-02	ci left: 7.289968e-02	ci right 7.397863e-02	k: 66094	n:900000
SEC14L1   900000 perm   493 sec   (1825 perm/sec)   p_kst 7.343778e-02   p_cons 2.222222e-06   p_joint 3.111111e-05

Joint ci ratio: 7.543927e-01	ci left: 1.866389e-05	ci right 4.186348e-05	k: 26	n:910000
Cons ci ratio: 2.263208e+00	ci left: 2.661642e-07	ci right 7.939194e-06	k: 2	n:910000
KS ci ratio: 1.459104e-02	ci left: 7.295041e-02	ci right 7.402373e-02	k: 66872	n:910000
SEC14L1   910000 perm   502 sec   (1812 perm/sec)   p_kst 7.348571e-02   p_cons 2.197802e-06   p_joint 2.857143e-05

Joint ci ratio: 7.543929e-01	ci left: 1.846102e-05	ci right 4.140845e-05	k: 26	n:920000
Cons ci ratio: 2.263208e+00	ci left: 2.632711e-07	ci right 7.852899e-06	k: 2	n:920000
KS ci ratio: 1.451464e-02	ci left: 7.292423e-02	ci right 7.399150e-02	k: 67580	n:920000
SEC14L1   920000 perm   511 sec   (1800 perm/sec)   p_kst 7.345652e-02   p_cons 2.173913e-06   p_joint 2.826087e-05

Joint ci ratio: 7.543930e-01	ci left: 1.826251e-05	ci right 4.096320e-05	k: 26	n:930000
Cons ci ratio: 2.263208e+00	ci left: 2.604402e-07	ci right 7.768460e-06	k: 2	n:930000
KS ci ratio: 1.443840e-02	ci left: 7.290827e-02	ci right 7.396966e-02	k: 68297	n:930000
SEC14L1   930000 perm   520 sec   (1788 perm/sec)   p_kst 7.343763e-02   p_cons 2.150538e-06   p_joint 2.795699e-05

Joint ci ratio: 7.543931e-01	ci left: 1.806823e-05	ci right 4.052742e-05	k: 26	n:940000
Cons ci ratio: 2.263208e+00	ci left: 2.576695e-07	ci right 7.685817e-06	k: 2	n:940000
KS ci ratio: 1.436200e-02	ci left: 7.290539e-02	ci right 7.396107e-02	k: 69026	n:940000
SEC14L1   940000 perm   529 sec   (1777 perm/sec)   p_kst 7.343191e-02   p_cons 2.127660e-06   p_joint 2.765957e-05

Joint ci ratio: 7.543932e-01	ci left: 1.787804e-05	ci right 4.010082e-05	k: 26	n:950000
Cons ci ratio: 2.263208e+00	ci left: 2.549572e-07	ci right 7.604913e-06	k: 2	n:950000
KS ci ratio: 1.428823e-02	ci left: 7.288894e-02	ci right 7.393892e-02	k: 69742	n:950000
SEC14L1   950000 perm   538 sec   (1766 perm/sec)   p_kst 7.341263e-02   p_cons 2.105263e-06   p_joint 2.736842e-05

Joint ci ratio: 7.543933e-01	ci left: 1.769181e-05	ci right 3.968311e-05	k: 26	n:960000
Cons ci ratio: 2.263208e+00	ci left: 2.523014e-07	ci right 7.525696e-06	k: 2	n:960000
KS ci ratio: 1.421636e-02	ci left: 7.286559e-02	ci right 7.390991e-02	k: 70451	n:960000
SEC14L1   960000 perm   547 sec   (1754 perm/sec)   p_kst 7.338646e-02   p_cons 2.083333e-06   p_joint 2.708333e-05

Joint ci ratio: 7.543935e-01	ci left: 1.750942e-05	ci right 3.927401e-05	k: 26	n:970000
Cons ci ratio: 2.263208e+00	ci left: 2.497004e-07	ci right 7.448112e-06	k: 2	n:970000
KS ci ratio: 1.413966e-02	ci left: 7.289924e-02	ci right 7.393836e-02	k: 71215	n:970000
SEC14L1   970000 perm   557 sec   (1743 perm/sec)   p_kst 7.341753e-02   p_cons 2.061856e-06   p_joint 2.680412e-05

Joint ci ratio: 7.407994e-01	ci left: 1.815637e-05	ci right 4.008504e-05	k: 27	n:980000
Cons ci ratio: 2.263208e+00	ci left: 2.471524e-07	ci right 7.372111e-06	k: 2	n:980000
KS ci ratio: 1.406292e-02	ci left: 7.294443e-02	ci right 7.397850e-02	k: 71991	n:980000
SEC14L1   980000 perm   566 sec   (1732 perm/sec)   p_kst 7.346020e-02   p_cons 2.040816e-06   p_joint 2.755102e-05

Joint ci ratio: 7.279147e-01	ci left: 1.879381e-05	ci right 4.087630e-05	k: 28	n:990000
Cons ci ratio: 2.263208e+00	ci left: 2.446559e-07	ci right 7.297645e-06	k: 2	n:990000
KS ci ratio: 1.399542e-02	ci left: 7.291119e-02	ci right 7.393979e-02	k: 72690	n:990000
SEC14L1   990000 perm   575 sec   (1721 perm/sec)   p_kst 7.342424e-02   p_cons 2.020202e-06   p_joint 2.828283e-05

Joint ci ratio: 7.279148e-01	ci left: 1.860587e-05	ci right 4.046754e-05	k: 28	n:1000000
Cons ci ratio: 2.263209e+00	ci left: 2.422094e-07	ci right 7.224669e-06	k: 2	n:1000000
KS ci ratio: 1.392437e-02	ci left: 7.292249e-02	ci right 7.394599e-02	k: 73433	n:1000000
SEC14L1   1000000 perm   585 sec   (1709 perm/sec)   p_kst 7.343300e-02   p_cons 2.000000e-06   p_joint 2.800000e-05

Joint ci ratio: 7.279149e-01	ci left: 1.842166e-05	ci right 4.006688e-05	k: 28	n:1010000
Cons ci ratio: 2.263209e+00	ci left: 2.398113e-07	ci right 7.153138e-06	k: 2	n:1010000
KS ci ratio: 1.385489e-02	ci left: 7.292864e-02	ci right 7.394708e-02	k: 74171	n:1010000
SEC14L1   1010000 perm   595 sec   (1698 perm/sec)   p_kst 7.343663e-02   p_cons 1.980198e-06   p_joint 2.772277e-05

Joint ci ratio: 7.279150e-01	ci left: 1.824105e-05	ci right 3.967407e-05	k: 28	n:1020000
Cons ci ratio: 2.263209e+00	ci left: 2.374602e-07	ci right 7.083009e-06	k: 2	n:1020000
KS ci ratio: 1.378983e-02	ci left: 7.290146e-02	ci right 7.391469e-02	k: 74875	n:1020000
SEC14L1   1020000 perm   604 sec   (1687 perm/sec)   p_kst 7.340686e-02   p_cons 1.960784e-06   p_joint 2.745098e-05

Joint ci ratio: 7.279151e-01	ci left: 1.806395e-05	ci right 3.928888e-05	k: 28	n:1030000
Cons ci ratio: 2.263209e+00	ci left: 2.351547e-07	ci right 7.014242e-06	k: 2	n:1030000
KS ci ratio: 1.372636e-02	ci left: 7.286804e-02	ci right 7.387611e-02	k: 75572	n:1030000
SEC14L1   1030000 perm   614 sec   (1677 perm/sec)   p_kst 7.337087e-02   p_cons 1.941748e-06   p_joint 2.718447e-05

Joint ci ratio: 7.279152e-01	ci left: 1.789026e-05	ci right 3.891111e-05	k: 28	n:1040000
Cons ci ratio: 2.263209e+00	ci left: 2.328936e-07	ci right 6.946798e-06	k: 2	n:1040000
KS ci ratio: 1.366105e-02	ci left: 7.286211e-02	ci right 7.386527e-02	k: 76297	n:1040000
SEC14L1   1040000 perm   624 sec   (1667 perm/sec)   p_kst 7.336250e-02   p_cons 1.923077e-06   p_joint 2.692308e-05

Joint ci ratio: 7.279153e-01	ci left: 1.771988e-05	ci right 3.854053e-05	k: 28	n:1050000
Cons ci ratio: 2.263209e+00	ci left: 2.306756e-07	ci right 6.880638e-06	k: 2	n:1050000
KS ci ratio: 1.359685e-02	ci left: 7.285441e-02	ci right 7.385271e-02	k: 77020	n:1050000
SEC14L1   1050000 perm   634 sec   (1656 perm/sec)   p_kst 7.335238e-02   p_cons 1.904762e-06   p_joint 2.666667e-05

Joint ci ratio: 7.279154e-01	ci left: 1.755271e-05	ci right 3.817694e-05	k: 28	n:1060000
Cons ci ratio: 2.263209e+00	ci left: 2.284994e-07	ci right 6.815726e-06	k: 2	n:1060000
KS ci ratio: 1.352933e-02	ci left: 7.288918e-02	ci right 7.388296e-02	k: 77788	n:1060000
SEC14L1   1060000 perm   644 sec   (1646 perm/sec)   p_kst 7.338491e-02   p_cons 1.886792e-06   p_joint 2.641509e-05

Joint ci ratio: 7.279155e-01	ci left: 1.738866e-05	ci right 3.782015e-05	k: 28	n:1070000
Cons ci ratio: 2.263209e+00	ci left: 2.263639e-07	ci right 6.752028e-06	k: 2	n:1070000
KS ci ratio: 1.346548e-02	ci left: 7.289630e-02	ci right 7.388545e-02	k: 78527	n:1070000
SEC14L1   1070000 perm   654 sec   (1636 perm/sec)   p_kst 7.338972e-02   p_cons 1.869159e-06   p_joint 2.616822e-05

Joint ci ratio: 7.156805e-01	ci left: 1.798318e-05	ci right 3.856351e-05	k: 29	n:1080000
Cons ci ratio: 2.263209e+00	ci left: 2.242679e-07	ci right 6.689509e-06	k: 2	n:1080000
KS ci ratio: 1.340682e-02	ci left: 7.285991e-02	ci right 7.384423e-02	k: 79219	n:1080000
SEC14L1   1080000 perm   664 sec   (1626 perm/sec)   p_kst 7.335093e-02   p_cons 1.851852e-06   p_joint 2.685185e-05

Joint ci ratio: 7.040424e-01	ci left: 1.856968e-05	ci right 3.929047e-05	k: 30	n:1090000
Cons ci ratio: 2.263209e+00	ci left: 2.222104e-07	ci right 6.628138e-06	k: 2	n:1090000
KS ci ratio: 1.334478e-02	ci left: 7.286627e-02	ci right 7.384609e-02	k: 79957	n:1090000
SEC14L1   1090000 perm   674 sec   (1617 perm/sec)   p_kst 7.335505e-02   p_cons 1.834862e-06   p_joint 2.752294e-05

Joint ci ratio: 6.929543e-01	ci left: 1.914826e-05	ci right 4.000160e-05	k: 31	n:1100000
Cons ci ratio: 1.959996e+00	ci left: 5.624296e-07	ci right 7.970227e-06	k: 3	n:1100000
KS ci ratio: 1.328394e-02	ci left: 7.286890e-02	ci right 7.384425e-02	k: 80691	n:1100000
SEC14L1   1100000 perm   685 sec   (1607 perm/sec)   p_kst 7.335545e-02   p_cons 2.727273e-06   p_joint 2.818182e-05

Joint ci ratio: 6.929543e-01	ci left: 1.897575e-05	ci right 3.964123e-05	k: 31	n:1110000
Cons ci ratio: 1.959996e+00	ci left: 5.573626e-07	ci right 7.898424e-06	k: 3	n:1110000
KS ci ratio: 1.322446e-02	ci left: 7.286611e-02	ci right 7.383702e-02	k: 81419	n:1110000
SEC14L1   1110000 perm   695 sec   (1597 perm/sec)   p_kst 7.335045e-02   p_cons 2.702703e-06   p_joint 2.792793e-05

Joint ci ratio: 6.823741e-01	ci left: 1.954292e-05	ci right 4.033409e-05	k: 32	n:1120000
Cons ci ratio: 1.959996e+00	ci left: 5.523862e-07	ci right 7.827902e-06	k: 3	n:1120000
KS ci ratio: 1.316862e-02	ci left: 7.283400e-02	ci right 7.380035e-02	k: 82114	n:1120000
SEC14L1   1120000 perm   705 sec   (1588 perm/sec)   p_kst 7.331607e-02   p_cons 2.678571e-06   p_joint 2.857143e-05

Joint ci ratio: 6.823741e-01	ci left: 1.936997e-05	ci right 3.997716e-05	k: 32	n:1130000
Cons ci ratio: 1.959996e+00	ci left: 5.474978e-07	ci right 7.758629e-06	k: 3	n:1130000
KS ci ratio: 1.311041e-02	ci left: 7.283423e-02	ci right 7.379628e-02	k: 82845	n:1130000
SEC14L1   1130000 perm   716 sec   (1578 perm/sec)   p_kst 7.331416e-02   p_cons 2.654867e-06   p_joint 2.831858e-05

Joint ci ratio: 6.823742e-01	ci left: 1.920006e-05	ci right 3.962648e-05	k: 32	n:1140000
Cons ci ratio: 1.959996e+00	ci left: 5.426952e-07	ci right 7.690571e-06	k: 3	n:1140000
KS ci ratio: 1.305591e-02	ci left: 7.280385e-02	ci right 7.376148e-02	k: 83541	n:1140000
SEC14L1   1140000 perm   727 sec   (1569 perm/sec)   p_kst 7.328158e-02   p_cons 2.631579e-06   p_joint 2.807018e-05

Joint ci ratio: 6.823743e-01	ci left: 1.903310e-05	ci right 3.928191e-05	k: 32	n:1150000
Cons ci ratio: 1.959996e+00	ci left: 5.379761e-07	ci right 7.623697e-06	k: 3	n:1150000
KS ci ratio: 1.299610e-02	ci left: 7.283643e-02	ci right 7.379006e-02	k: 84309	n:1150000
SEC14L1   1150000 perm   737 sec   (1560 perm/sec)   p_kst 7.331217e-02   p_cons 2.608696e-06   p_joint 2.782609e-05

Joint ci ratio: 6.823744e-01	ci left: 1.886902e-05	ci right 3.894327e-05	k: 32	n:1160000
Cons ci ratio: 1.959996e+00	ci left: 5.333384e-07	ci right 7.557975e-06	k: 3	n:1160000
KS ci ratio: 1.294210e-02	ci left: 7.281603e-02	ci right 7.376541e-02	k: 85016	n:1160000
SEC14L1   1160000 perm   748 sec   (1550 perm/sec)   p_kst 7.328966e-02   p_cons 2.586207e-06   p_joint 2.758621e-05

Joint ci ratio: 6.823745e-01	ci left: 1.870774e-05	ci right 3.861043e-05	k: 32	n:1170000
Cons ci ratio: 1.959996e+00	ci left: 5.287799e-07	ci right 7.493377e-06	k: 3	n:1170000
KS ci ratio: 1.288797e-02	ci left: 7.280451e-02	ci right 7.374974e-02	k: 85733	n:1170000
SEC14L1   1170000 perm   759 sec   (1542 perm/sec)   p_kst 7.327607e-02   p_cons 2.564103e-06   p_joint 2.735043e-05

Joint ci ratio: 6.823746e-01	ci left: 1.854920e-05	ci right 3.828322e-05	k: 32	n:1180000
Cons ci ratio: 1.959996e+00	ci left: 5.242987e-07	ci right 7.429874e-06	k: 3	n:1180000
KS ci ratio: 1.283474e-02	ci left: 7.279066e-02	ci right 7.373177e-02	k: 86447	n:1180000
SEC14L1   1180000 perm   770 sec   (1533 perm/sec)   p_kst 7.326017e-02   p_cons 2.542373e-06   p_joint 2.711864e-05

Joint ci ratio: 6.823747e-01	ci left: 1.839333e-05	ci right 3.796151e-05	k: 32	n:1190000
Cons ci ratio: 1.959996e+00	ci left: 5.198928e-07	ci right 7.367439e-06	k: 3	n:1190000
KS ci ratio: 1.278075e-02	ci left: 7.279213e-02	ci right 7.372927e-02	k: 87179	n:1190000
SEC14L1   1190000 perm   781 sec   (1524 perm/sec)   p_kst 7.325966e-02   p_cons 2.521008e-06   p_joint 2.689076e-05

Joint ci ratio: 6.823747e-01	ci left: 1.824005e-05	ci right 3.764517e-05	k: 32	n:1200000
Cons ci ratio: 1.959996e+00	ci left: 5.155604e-07	ci right 7.306043e-06	k: 3	n:1200000
KS ci ratio: 1.272743e-02	ci left: 7.279359e-02	ci right 7.372681e-02	k: 87911	n:1200000
SEC14L1   1200000 perm   792 sec   (1516 perm/sec)   p_kst 7.325917e-02   p_cons 2.500000e-06   p_joint 2.666667e-05

Joint ci ratio: 6.823748e-01	ci left: 1.808930e-05	ci right 3.733405e-05	k: 32	n:1210000
Cons ci ratio: 1.959996e+00	ci left: 5.112996e-07	ci right 7.245663e-06	k: 3	n:1210000
KS ci ratio: 1.267609e-02	ci left: 7.278101e-02	ci right 7.371029e-02	k: 88626	n:1210000
SEC14L1   1210000 perm   803 sec   (1507 perm/sec)   p_kst 7.324463e-02   p_cons 2.479339e-06   p_joint 2.644628e-05

Joint ci ratio: 7.839916e-01	ci left: 1.260434e-05	ci right 2.927043e-05	k: 24	n:1220000
Cons ci ratio: 1.959996e+00	ci left: 5.071086e-07	ci right 7.186272e-06	k: 3	n:1220000
KS ci ratio: 1.262147e-02	ci left: 7.281034e-02	ci right 7.373595e-02	k: 89392	n:1220000
SEC14L1   1220000 perm   814 sec   (1499 perm/sec)   p_kst 7.327213e-02   p_cons 2.459016e-06   p_joint 1.967213e-05

Joint ci ratio: 7.839917e-01	ci left: 1.250187e-05	ci right 2.903246e-05	k: 24	n:1230000
Cons ci ratio: 1.959996e+00	ci left: 5.029857e-07	ci right 7.127848e-06	k: 3	n:1230000
KS ci ratio: 1.257102e-02	ci left: 7.280191e-02	ci right 7.372368e-02	k: 90112	n:1230000
SEC14L1   1230000 perm   825 sec   (1491 perm/sec)   p_kst 7.326179e-02   p_cons 2.439024e-06   p_joint 1.951220e-05

Joint ci ratio: 7.839918e-01	ci left: 1.240105e-05	ci right 2.879833e-05	k: 24	n:1240000
Cons ci ratio: 1.959996e+00	ci left: 4.989294e-07	ci right 7.070365e-06	k: 3	n:1240000
KS ci ratio: 1.251760e-02	ci left: 7.283221e-02	ci right 7.375043e-02	k: 90880	n:1240000
SEC14L1   1240000 perm   837 sec   (1482 perm/sec)   p_kst 7.329032e-02   p_cons 2.419355e-06   p_joint 1.935484e-05

Joint ci ratio: 7.839918e-01	ci left: 1.230184e-05	ci right 2.856794e-05	k: 24	n:1250000
Cons ci ratio: 1.959996e+00	ci left: 4.949380e-07	ci right 7.013802e-06	k: 3	n:1250000
KS ci ratio: 1.247036e-02	ci left: 7.280222e-02	ci right 7.371656e-02	k: 91573	n:1250000
SEC14L1   1250000 perm   848 sec   (1473 perm/sec)   p_kst 7.325840e-02   p_cons 2.400000e-06   p_joint 1.920000e-05

Joint ci ratio: 7.839919e-01	ci left: 1.220421e-05	ci right 2.834122e-05	k: 24	n:1260000
Cons ci ratio: 1.959996e+00	ci left: 4.910099e-07	ci right 6.958137e-06	k: 3	n:1260000
KS ci ratio: 1.242169e-02	ci left: 7.279407e-02	ci right 7.370472e-02	k: 92293	n:1260000
SEC14L1   1260000 perm   860 sec   (1465 perm/sec)   p_kst 7.324841e-02   p_cons 2.380952e-06   p_joint 1.904762e-05

Joint ci ratio: 7.687671e-01	ci left: 1.273916e-05	ci right 2.905887e-05	k: 25	n:1270000
Cons ci ratio: 1.959996e+00	ci left: 4.871437e-07	ci right 6.903349e-06	k: 3	n:1270000
KS ci ratio: 1.237430e-02	ci left: 7.277820e-02	ci right 7.368516e-02	k: 93003	n:1270000
SEC14L1   1270000 perm   872 sec   (1456 perm/sec)   p_kst 7.323071e-02   p_cons 2.362205e-06   p_joint 1.968504e-05

Joint ci ratio: 7.687671e-01	ci left: 1.263963e-05	ci right 2.883184e-05	k: 25	n:1280000
Cons ci ratio: 1.959996e+00	ci left: 4.833379e-07	ci right 6.849417e-06	k: 3	n:1280000
KS ci ratio: 1.232476e-02	ci left: 7.279220e-02	ci right 7.369567e-02	k: 93751	n:1280000
SEC14L1   1280000 perm   884 sec   (1448 perm/sec)   p_kst 7.324297e-02   p_cons 2.343750e-06   p_joint 1.953125e-05

Joint ci ratio: 7.687672e-01	ci left: 1.254165e-05	ci right 2.860834e-05	k: 25	n:1290000
Cons ci ratio: 1.959996e+00	ci left: 4.795910e-07	ci right 6.796321e-06	k: 3	n:1290000
KS ci ratio: 1.227489e-02	ci left: 7.281603e-02	ci right 7.371612e-02	k: 94512	n:1290000
SEC14L1   1290000 perm   895 sec   (1441 perm/sec)   p_kst 7.326512e-02   p_cons 2.325581e-06   p_joint 1.937984e-05

Joint ci ratio: 7.687673e-01	ci left: 1.244518e-05	ci right 2.838828e-05	k: 25	n:1300000
Cons ci ratio: 1.959996e+00	ci left: 4.759019e-07	ci right 6.744041e-06	k: 3	n:1300000
KS ci ratio: 1.222404e-02	ci left: 7.285715e-02	ci right 7.375398e-02	k: 95296	n:1300000
SEC14L1   1300000 perm   907 sec   (1433 perm/sec)   p_kst 7.330462e-02   p_cons 2.307692e-06   p_joint 1.923077e-05

Joint ci ratio: 7.543963e-01	ci left: 1.296497e-05	ci right 2.908080e-05	k: 26	n:1310000
Cons ci ratio: 1.959996e+00	ci left: 4.722690e-07	ci right 6.692560e-06	k: 3	n:1310000
KS ci ratio: 1.217353e-02	ci left: 7.290069e-02	ci right 7.379433e-02	k: 96084	n:1310000
SEC14L1   1310000 perm   920 sec   (1424 perm/sec)   p_kst 7.334656e-02   p_cons 2.290076e-06   p_joint 1.984733e-05

Joint ci ratio: 7.543964e-01	ci left: 1.286675e-05	ci right 2.886049e-05	k: 26	n:1320000
Cons ci ratio: 1.959996e+00	ci left: 4.686912e-07	ci right 6.641859e-06	k: 3	n:1320000
KS ci ratio: 1.212750e-02	ci left: 7.290052e-02	ci right 7.379075e-02	k: 96815	n:1320000
SEC14L1   1320000 perm   932 sec   (1417 perm/sec)   p_kst 7.334470e-02   p_cons 2.272727e-06   p_joint 1.969697e-05

Joint ci ratio: 7.543964e-01	ci left: 1.277001e-05	ci right 2.864350e-05	k: 26	n:1330000
Cons ci ratio: 1.959996e+00	ci left: 4.651673e-07	ci right 6.591920e-06	k: 3	n:1330000
KS ci ratio: 1.208299e-02	ci left: 7.288911e-02	ci right 7.377591e-02	k: 97531	n:1330000
SEC14L1   1330000 perm   944 sec   (1409 perm/sec)   p_kst 7.333158e-02   p_cons 2.255639e-06   p_joint 1.954887e-05

Joint ci ratio: 7.543965e-01	ci left: 1.267471e-05	ci right 2.842974e-05	k: 26	n:1340000
Cons ci ratio: 1.959996e+00	ci left: 4.616959e-07	ci right 6.542727e-06	k: 3	n:1340000
KS ci ratio: 1.203929e-02	ci left: 7.287415e-02	ci right 7.375755e-02	k: 98242	n:1340000
SEC14L1   1340000 perm   956 sec   (1402 perm/sec)   p_kst 7.331493e-02   p_cons 2.238806e-06   p_joint 1.940299e-05

Joint ci ratio: 7.543965e-01	ci left: 1.258082e-05	ci right 2.821915e-05	k: 26	n:1350000
Cons ci ratio: 1.959996e+00	ci left: 4.582759e-07	ci right 6.494262e-06	k: 3	n:1350000
KS ci ratio: 1.199247e-02	ci left: 7.290005e-02	ci right 7.378030e-02	k: 99008	n:1350000
SEC14L1   1350000 perm   968 sec   (1394 perm/sec)   p_kst 7.333926e-02   p_cons 2.222222e-06   p_joint 1.925926e-05

Joint ci ratio: 7.543966e-01	ci left: 1.248832e-05	ci right 2.801166e-05	k: 26	n:1360000
Cons ci ratio: 1.959996e+00	ci left: 4.549062e-07	ci right 6.446511e-06	k: 3	n:1360000
KS ci ratio: 1.194639e-02	ci left: 7.292338e-02	ci right 7.380050e-02	k: 99771	n:1360000
SEC14L1   1360000 perm   981 sec   (1387 perm/sec)   p_kst 7.336103e-02   p_cons 2.205882e-06   p_joint 1.911765e-05

Joint ci ratio: 7.543966e-01	ci left: 1.239716e-05	ci right 2.780719e-05	k: 26	n:1370000
Cons ci ratio: 1.959996e+00	ci left: 4.515857e-07	ci right 6.399456e-06	k: 3	n:1370000
KS ci ratio: 1.190122e-02	ci left: 7.294200e-02	ci right 7.381601e-02	k: 100528	n:1370000
SEC14L1   1370000 perm   993 sec   (1379 perm/sec)   p_kst 7.337810e-02   p_cons 2.189781e-06   p_joint 1.897810e-05

Joint ci ratio: 7.543967e-01	ci left: 1.230733e-05	ci right 2.760569e-05	k: 26	n:1380000
Cons ci ratio: 1.959996e+00	ci left: 4.483134e-07	ci right 6.353083e-06	k: 3	n:1380000
KS ci ratio: 1.185680e-02	ci left: 7.295747e-02	ci right 7.382838e-02	k: 101281	n:1380000
SEC14L1   1380000 perm   1006 sec   (1372 perm/sec)   p_kst 7.339203e-02   p_cons 2.173913e-06   p_joint 1.884058e-05

Joint ci ratio: 7.543968e-01	ci left: 1.221879e-05	ci right 2.740709e-05	k: 26	n:1390000
Cons ci ratio: 1.959996e+00	ci left: 4.450881e-07	ci right 6.307378e-06	k: 3	n:1390000
KS ci ratio: 1.181201e-02	ci left: 7.298277e-02	ci right 7.385067e-02	k: 102048	n:1390000
SEC14L1   1390000 perm   1019 sec   (1365 perm/sec)   p_kst 7.341583e-02   p_cons 2.158273e-06   p_joint 1.870504e-05

Joint ci ratio: 7.408027e-01	ci left: 1.270944e-05	ci right 2.805958e-05	k: 27	n:1400000
Cons ci ratio: 1.959997e+00	ci left: 4.419089e-07	ci right 6.262325e-06	k: 3	n:1400000
KS ci ratio: 1.177130e-02	ci left: 7.296639e-02	ci right 7.383109e-02	k: 102757	n:1400000
SEC14L1   1400000 perm   1031 sec   (1358 perm/sec)   p_kst 7.339786e-02   p_cons 2.142857e-06   p_joint 1.928571e-05

Joint ci ratio: 7.408027e-01	ci left: 1.261931e-05	ci right 2.786058e-05	k: 27	n:1410000
Cons ci ratio: 1.959997e+00	ci left: 4.387748e-07	ci right 6.217911e-06	k: 3	n:1410000
KS ci ratio: 1.172478e-02	ci left: 7.302240e-02	ci right 7.388432e-02	k: 103568	n:1410000
SEC14L1   1410000 perm   1044 sec   (1350 perm/sec)   p_kst 7.345248e-02   p_cons 2.127660e-06   p_joint 1.914894e-05

Joint ci ratio: 7.839928e-01	ci left: 1.082908e-05	ci right 2.514785e-05	k: 24	n:1420000
Cons ci ratio: 1.959997e+00	ci left: 4.356848e-07	ci right 6.174123e-06	k: 3	n:1420000
KS ci ratio: 1.168188e-02	ci left: 7.304181e-02	ci right 7.390078e-02	k: 104328	n:1420000
SEC14L1   1420000 perm   1057 sec   (1343 perm/sec)   p_kst 7.347042e-02   p_cons 2.112676e-06   p_joint 1.690141e-05

Joint ci ratio: 7.839929e-01	ci left: 1.075335e-05	ci right 2.497199e-05	k: 24	n:1430000
Cons ci ratio: 1.959997e+00	ci left: 4.326381e-07	ci right 6.130948e-06	k: 3	n:1430000
KS ci ratio: 1.163814e-02	ci left: 7.307629e-02	ci right 7.393243e-02	k: 105110	n:1430000
SEC14L1   1430000 perm   1071 sec   (1336 perm/sec)   p_kst 7.350350e-02   p_cons 2.097902e-06   p_joint 1.678322e-05

Joint ci ratio: 7.687680e-01	ci left: 1.123523e-05	ci right 2.562832e-05	k: 25	n:1440000
Cons ci ratio: 1.959997e+00	ci left: 4.296336e-07	ci right 6.088372e-06	k: 3	n:1440000
KS ci ratio: 1.159772e-02	ci left: 7.307706e-02	ci right 7.393021e-02	k: 105844	n:1440000
SEC14L1   1440000 perm   1083 sec   (1329 perm/sec)   p_kst 7.350278e-02   p_cons 2.083333e-06   p_joint 1.736111e-05

Joint ci ratio: 7.687681e-01	ci left: 1.115774e-05	ci right 2.545157e-05	k: 25	n:1450000
Cons ci ratio: 1.959997e+00	ci left: 4.266706e-07	ci right 6.046383e-06	k: 3	n:1450000
KS ci ratio: 1.155772e-02	ci left: 7.307782e-02	ci right 7.392802e-02	k: 106578	n:1450000
SEC14L1   1450000 perm   1096 sec   (1323 perm/sec)   p_kst 7.350207e-02   p_cons 2.068966e-06   p_joint 1.724138e-05

Joint ci ratio: 7.687681e-01	ci left: 1.108132e-05	ci right 2.527725e-05	k: 25	n:1460000
Cons ci ratio: 1.959997e+00	ci left: 4.237482e-07	ci right 6.004970e-06	k: 3	n:1460000
KS ci ratio: 1.151819e-02	ci left: 7.307790e-02	ci right 7.392517e-02	k: 107311	n:1460000
SEC14L1   1460000 perm   1109 sec   (1316 perm/sec)   p_kst 7.350068e-02   p_cons 2.054795e-06   p_joint 1.712329e-05

Joint ci ratio: 7.687682e-01	ci left: 1.100594e-05	ci right 2.510529e-05	k: 25	n:1470000
Cons ci ratio: 1.959997e+00	ci left: 4.208656e-07	ci right 5.964120e-06	k: 3	n:1470000
KS ci ratio: 1.148158e-02	ci left: 7.304812e-02	ci right 7.389234e-02	k: 108000	n:1470000
SEC14L1   1470000 perm   1122 sec   (1310 perm/sec)   p_kst 7.346939e-02   p_cons 2.040816e-06   p_joint 1.700680e-05

Joint ci ratio: 7.687682e-01	ci left: 1.093157e-05	ci right 2.493566e-05	k: 25	n:1480000
Cons ci ratio: 1.959997e+00	ci left: 4.180219e-07	ci right 5.923822e-06	k: 3	n:1480000
KS ci ratio: 1.144163e-02	ci left: 7.306256e-02	ci right 7.390398e-02	k: 108754	n:1480000
SEC14L1   1480000 perm   1135 sec   (1304 perm/sec)   p_kst 7.348243e-02   p_cons 2.027027e-06   p_joint 1.689189e-05

Joint ci ratio: 7.687683e-01	ci left: 1.085820e-05	ci right 2.476831e-05	k: 25	n:1490000
Cons ci ratio: 1.959997e+00	ci left: 4.152164e-07	ci right 5.884065e-06	k: 3	n:1490000
KS ci ratio: 1.140058e-02	ci left: 7.309487e-02	ci right 7.393363e-02	k: 109535	n:1490000
SEC14L1   1490000 perm   1149 sec   (1297 perm/sec)   p_kst 7.351342e-02   p_cons 2.013423e-06   p_joint 1.677852e-05

Joint ci ratio: 7.687683e-01	ci left: 1.078582e-05	ci right 2.460319e-05	k: 25	n:1500000
Cons ci ratio: 1.959997e+00	ci left: 4.124483e-07	ci right 5.844837e-06	k: 3	n:1500000
KS ci ratio: 1.136235e-02	ci left: 7.309818e-02	ci right 7.393414e-02	k: 110273	n:1500000
SEC14L1   1500000 perm   1162 sec   (1291 perm/sec)   p_kst 7.351533e-02   p_cons 2.000000e-06   p_joint 1.666667e-05

Joint ci ratio: 7.687684e-01	ci left: 1.071439e-05	ci right 2.444026e-05	k: 25	n:1510000
Cons ci ratio: 1.959997e+00	ci left: 4.097168e-07	ci right 5.806130e-06	k: 3	n:1510000
KS ci ratio: 1.132413e-02	ci left: 7.310606e-02	ci right 7.393928e-02	k: 111018	n:1510000
SEC14L1   1510000 perm   1176 sec   (1284 perm/sec)   p_kst 7.352185e-02   p_cons 1.986755e-06   p_joint 1.655629e-05

Joint ci ratio: 8.357405e-01	ci left: 8.552211e-06	ci right 2.111882e-05	k: 21	n:1520000
Cons ci ratio: 1.959997e+00	ci left: 4.070213e-07	ci right 5.767932e-06	k: 3	n:1520000
KS ci ratio: 1.128546e-02	ci left: 7.312369e-02	ci right 7.395425e-02	k: 111778	n:1520000
SEC14L1   1520000 perm   1190 sec   (1278 perm/sec)   p_kst 7.353816e-02   p_cons 1.973684e-06   p_joint 1.381579e-05

Joint ci ratio: 8.357405e-01	ci left: 8.496314e-06	ci right 2.098079e-05	k: 21	n:1530000
Cons ci ratio: 1.959997e+00	ci left: 4.043610e-07	ci right 5.730233e-06	k: 3	n:1530000
KS ci ratio: 1.125043e-02	ci left: 7.310198e-02	ci right 7.392970e-02	k: 112478	n:1530000
SEC14L1   1530000 perm   1203 sec   (1271 perm/sec)   p_kst 7.351503e-02   p_cons 1.960784e-06   p_joint 1.372549e-05

Joint ci ratio: 8.357406e-01	ci left: 8.441143e-06	ci right 2.084456e-05	k: 21	n:1540000
Cons ci ratio: 1.959997e+00	ci left: 4.017353e-07	ci right 5.693024e-06	k: 3	n:1540000
KS ci ratio: 1.121273e-02	ci left: 7.311683e-02	ci right 7.394192e-02	k: 113234	n:1540000
SEC14L1   1540000 perm   1217 sec   (1265 perm/sec)   p_kst 7.352857e-02   p_cons 1.948052e-06   p_joint 1.363636e-05

Joint ci ratio: 8.357406e-01	ci left: 8.386684e-06	ci right 2.071007e-05	k: 21	n:1550000
Cons ci ratio: 1.959997e+00	ci left: 3.991435e-07	ci right 5.656295e-06	k: 3	n:1550000
KS ci ratio: 1.117768e-02	ci left: 7.310381e-02	ci right 7.392617e-02	k: 113947	n:1550000
SEC14L1   1550000 perm   1231 sec   (1259 perm/sec)   p_kst 7.351419e-02   p_cons 1.935484e-06   p_joint 1.354839e-05

Joint ci ratio: 8.357406e-01	ci left: 8.332923e-06	ci right 2.057732e-05	k: 21	n:1560000
Cons ci ratio: 1.959997e+00	ci left: 3.965849e-07	ci right 5.620036e-06	k: 3	n:1560000
KS ci ratio: 1.114338e-02	ci left: 7.308586e-02	ci right 7.390547e-02	k: 114652	n:1560000
SEC14L1   1560000 perm   1246 sec   (1252 perm/sec)   p_kst 7.349487e-02   p_cons 1.923077e-06   p_joint 1.346154e-05

Joint ci ratio: 8.357407e-01	ci left: 8.279847e-06	ci right 2.044625e-05	k: 21	n:1570000
Cons ci ratio: 1.959997e+00	ci left: 3.940588e-07	ci right 5.584240e-06	k: 3	n:1570000
KS ci ratio: 1.110643e-02	ci left: 7.310435e-02	ci right 7.392143e-02	k: 115414	n:1570000
SEC14L1   1570000 perm   1260 sec   (1246 perm/sec)   p_kst 7.351210e-02   p_cons 1.910828e-06   p_joint 1.337580e-05

Joint ci ratio: 8.173703e-01	ci left: 8.726148e-06	ci right 2.108110e-05	k: 22	n:1580000
Cons ci ratio: 1.959997e+00	ci left: 3.915648e-07	ci right 5.548897e-06	k: 3	n:1580000
KS ci ratio: 1.107160e-02	ci left: 7.310114e-02	ci right 7.391561e-02	k: 116142	n:1580000
SEC14L1   1580000 perm   1274 sec   (1241 perm/sec)   p_kst 7.350759e-02   p_cons 1.898734e-06   p_joint 1.392405e-05

Joint ci ratio: 8.173703e-01	ci left: 8.671267e-06	ci right 2.094852e-05	k: 22	n:1590000
Cons ci ratio: 1.959997e+00	ci left: 3.891021e-07	ci right 5.513998e-06	k: 3	n:1590000
KS ci ratio: 1.103800e-02	ci left: 7.308669e-02	ci right 7.389851e-02	k: 116852	n:1590000
SEC14L1   1590000 perm   1288 sec   (1235 perm/sec)   p_kst 7.349182e-02   p_cons 1.886792e-06   p_joint 1.383648e-05

Joint ci ratio: 8.173704e-01	ci left: 8.617071e-06	ci right 2.081759e-05	k: 22	n:1600000
Cons ci ratio: 1.959997e+00	ci left: 3.866702e-07	ci right 5.479536e-06	k: 3	n:1600000
KS ci ratio: 1.100219e-02	ci left: 7.310359e-02	ci right 7.391295e-02	k: 117612	n:1600000
SEC14L1   1600000 perm   1302 sec   (1229 perm/sec)   p_kst 7.350750e-02   p_cons 1.875000e-06   p_joint 1.375000e-05

Joint ci ratio: 8.173704e-01	ci left: 8.563549e-06	ci right 2.068829e-05	k: 22	n:1610000
Cons ci ratio: 1.959997e+00	ci left: 3.842686e-07	ci right 5.445501e-06	k: 3	n:1610000
KS ci ratio: 1.096862e-02	ci left: 7.309675e-02	ci right 7.390355e-02	k: 118334	n:1610000
SEC14L1   1610000 perm   1317 sec   (1223 perm/sec)   p_kst 7.349938e-02   p_cons 1.863354e-06   p_joint 1.366460e-05

Joint ci ratio: 8.173704e-01	ci left: 8.510687e-06	ci right 2.056059e-05	k: 22	n:1620000
Cons ci ratio: 1.959997e+00	ci left: 3.818965e-07	ci right 5.411887e-06	k: 3	n:1620000
KS ci ratio: 1.093417e-02	ci left: 7.310477e-02	ci right 7.390910e-02	k: 119080	n:1620000
SEC14L1   1620000 perm   1331 sec   (1217 perm/sec)   p_kst 7.350617e-02   p_cons 1.851852e-06   p_joint 1.358025e-05

Joint ci ratio: 8.173705e-01	ci left: 8.458474e-06	ci right 2.043445e-05	k: 22	n:1630000
Cons ci ratio: 1.959997e+00	ci left: 3.795536e-07	ci right 5.378686e-06	k: 3	n:1630000
KS ci ratio: 1.089994e-02	ci left: 7.311392e-02	ci right 7.391582e-02	k: 119828	n:1630000
SEC14L1   1630000 perm   1346 sec   (1211 perm/sec)   p_kst 7.351411e-02   p_cons 1.840491e-06   p_joint 1.349693e-05

Joint ci ratio: 8.173705e-01	ci left: 8.406898e-06	ci right 2.030985e-05	k: 22	n:1640000
Cons ci ratio: 1.959997e+00	ci left: 3.772393e-07	ci right 5.345889e-06	k: 3	n:1640000
KS ci ratio: 1.086506e-02	ci left: 7.313512e-02	ci right 7.393468e-02	k: 120596	n:1640000
SEC14L1   1640000 perm   1360 sec   (1206 perm/sec)   p_kst 7.353415e-02   p_cons 1.829268e-06   p_joint 1.341463e-05

Joint ci ratio: 8.173706e-01	ci left: 8.355947e-06	ci right 2.018676e-05	k: 22	n:1650000
Cons ci ratio: 1.959997e+00	ci left: 3.749530e-07	ci right 5.313490e-06	k: 3	n:1650000
KS ci ratio: 1.083191e-02	ci left: 7.313855e-02	ci right 7.393568e-02	k: 121335	n:1650000
SEC14L1   1650000 perm   1375 sec   (1200 perm/sec)   p_kst 7.353636e-02   p_cons 1.818182e-06   p_joint 1.333333e-05

Joint ci ratio: 8.173706e-01	ci left: 8.305610e-06	ci right 2.006515e-05	k: 22	n:1660000
Cons ci ratio: 1.959997e+00	ci left: 3.726942e-07	ci right 5.281481e-06	k: 3	n:1660000
KS ci ratio: 1.080174e-02	ci left: 7.310828e-02	ci right 7.390285e-02	k: 122018	n:1660000
SEC14L1   1660000 perm   1390 sec   (1194 perm/sec)   p_kst 7.350482e-02   p_cons 1.807229e-06   p_joint 1.325301e-05

Joint ci ratio: 8.993043e-01	ci left: 6.388001e-06	ci right 1.703453e-05	k: 18	n:1670000
Cons ci ratio: 1.959997e+00	ci left: 3.704625e-07	ci right 5.249855e-06	k: 3	n:1670000
KS ci ratio: 1.076864e-02	ci left: 7.311840e-02	ci right 7.391063e-02	k: 122768	n:1670000
SEC14L1   1670000 perm   1405 sec   (1188 perm/sec)   p_kst 7.351377e-02   p_cons 1.796407e-06   p_joint 1.077844e-05

Joint ci ratio: 8.993043e-01	ci left: 6.349977e-06	ci right 1.693314e-05	k: 18	n:1680000
Cons ci ratio: 1.959997e+00	ci left: 3.682574e-07	ci right 5.218606e-06	k: 3	n:1680000
KS ci ratio: 1.073510e-02	ci left: 7.313790e-02	ci right 7.392786e-02	k: 123534	n:1680000
SEC14L1   1680000 perm   1421 sec   (1182 perm/sec)   p_kst 7.353214e-02   p_cons 1.785714e-06   p_joint 1.071429e-05

Joint ci ratio: 8.993044e-01	ci left: 6.312403e-06	ci right 1.683294e-05	k: 18	n:1690000
Cons ci ratio: 1.959997e+00	ci left: 3.660783e-07	ci right 5.187727e-06	k: 3	n:1690000
KS ci ratio: 1.070117e-02	ci left: 7.316603e-02	ci right 7.395378e-02	k: 124315	n:1690000
SEC14L1   1690000 perm   1436 sec   (1177 perm/sec)   p_kst 7.355917e-02   p_cons 1.775148e-06   p_joint 1.065089e-05

Joint ci ratio: 8.993044e-01	ci left: 6.275271e-06	ci right 1.673393e-05	k: 18	n:1700000
Cons ci ratio: 1.959997e+00	ci left: 3.639249e-07	ci right 5.157211e-06	k: 3	n:1700000
KS ci ratio: 1.066898e-02	ci left: 7.317564e-02	ci right 7.396111e-02	k: 125065	n:1700000
SEC14L1   1700000 perm   1452 sec   (1171 perm/sec)   p_kst 7.356765e-02   p_cons 1.764706e-06   p_joint 1.058824e-05

Joint ci ratio: 8.993044e-01	ci left: 6.238573e-06	ci right 1.663607e-05	k: 18	n:1710000
Cons ci ratio: 1.959997e+00	ci left: 3.617967e-07	ci right 5.127052e-06	k: 3	n:1710000
KS ci ratio: 1.064024e-02	ci left: 7.314489e-02	ci right 7.392790e-02	k: 125746	n:1710000
SEC14L1   1710000 perm   1467 sec   (1166 perm/sec)   p_kst 7.353567e-02   p_cons 1.754386e-06   p_joint 1.052632e-05

Joint ci ratio: 8.993044e-01	ci left: 6.202303e-06	ci right 1.653935e-05	k: 18	n:1720000
Cons ci ratio: 1.959997e+00	ci left: 3.596932e-07	ci right 5.097243e-06	k: 3	n:1720000
KS ci ratio: 1.061046e-02	ci left: 7.313074e-02	ci right 7.391139e-02	k: 126455	n:1720000
SEC14L1   1720000 perm   1483 sec   (1160 perm/sec)   p_kst 7.352035e-02   p_cons 1.744186e-06   p_joint 1.046512e-05

Joint ci ratio: 8.993045e-01	ci left: 6.166451e-06	ci right 1.644374e-05	k: 18	n:1730000
Cons ci ratio: 1.959997e+00	ci left: 3.576141e-07	ci right 5.067779e-06	k: 3	n:1730000
KS ci ratio: 1.057877e-02	ci left: 7.314443e-02	ci right 7.392289e-02	k: 127212	n:1730000
SEC14L1   1730000 perm   1498 sec   (1154 perm/sec)   p_kst 7.353295e-02   p_cons 1.734104e-06   p_joint 1.040462e-05

Joint ci ratio: 8.993045e-01	ci left: 6.131012e-06	ci right 1.634924e-05	k: 18	n:1740000
Cons ci ratio: 1.959997e+00	ci left: 3.555588e-07	ci right 5.038654e-06	k: 3	n:1740000
KS ci ratio: 1.054683e-02	ci left: 7.316486e-02	ci right 7.394116e-02	k: 127981	n:1740000
SEC14L1   1740000 perm   1515 sec   (1149 perm/sec)   p_kst 7.355230e-02   p_cons 1.724138e-06   p_joint 1.034483e-05

Joint ci ratio: 8.993045e-01	ci left: 6.095977e-06	ci right 1.625581e-05	k: 18	n:1750000
Cons ci ratio: 1.959997e+00	ci left: 3.535271e-07	ci right 5.009862e-06	k: 3	n:1750000
KS ci ratio: 1.051509e-02	ci left: 7.318619e-02	ci right 7.396037e-02	k: 128752	n:1750000
SEC14L1   1750000 perm   1531 sec   (1143 perm/sec)   p_kst 7.357257e-02   p_cons 1.714286e-06   p_joint 1.028571e-05

Joint ci ratio: 8.993046e-01	ci left: 6.061341e-06	ci right 1.616345e-05	k: 18	n:1760000
Cons ci ratio: 1.959997e+00	ci left: 3.515184e-07	ci right 4.981397e-06	k: 3	n:1760000
KS ci ratio: 1.048564e-02	ci left: 7.318120e-02	ci right 7.395315e-02	k: 129477	n:1760000
SEC14L1   1760000 perm   1547 sec   (1137 perm/sec)   p_kst 7.356648e-02   p_cons 1.704545e-06   p_joint 1.022727e-05

Joint ci ratio: 8.993046e-01	ci left: 6.027096e-06	ci right 1.607213e-05	k: 18	n:1770000
Cons ci ratio: 1.959997e+00	ci left: 3.495324e-07	ci right 4.953254e-06	k: 3	n:1770000
KS ci ratio: 1.045575e-02	ci left: 7.318530e-02	ci right 7.395508e-02	k: 130218	n:1770000
SEC14L1   1770000 perm   1563 sec   (1132 perm/sec)   p_kst 7.356949e-02   p_cons 1.694915e-06   p_joint 1.016949e-05

Joint ci ratio: 8.993046e-01	ci left: 5.993236e-06	ci right 1.598184e-05	k: 18	n:1780000
Cons ci ratio: 1.959997e+00	ci left: 3.475687e-07	ci right 4.925426e-06	k: 3	n:1780000
KS ci ratio: 1.042611e-02	ci left: 7.318935e-02	ci right 7.395698e-02	k: 130959	n:1780000
SEC14L1   1780000 perm   1579 sec   (1127 perm/sec)   p_kst 7.357247e-02   p_cons 1.685393e-06   p_joint 1.011236e-05

Joint ci ratio: 8.993047e-01	ci left: 5.959754e-06	ci right 1.589256e-05	k: 18	n:1790000
Cons ci ratio: 1.959997e+00	ci left: 3.456270e-07	ci right 4.897910e-06	k: 3	n:1790000
KS ci ratio: 1.039548e-02	ci left: 7.320953e-02	ci right 7.397509e-02	k: 131729	n:1790000
SEC14L1   1790000 perm   1595 sec   (1122 perm/sec)   p_kst 7.359162e-02   p_cons 1.675978e-06   p_joint 1.005587e-05

Joint ci ratio: 8.993047e-01	ci left: 5.926644e-06	ci right 1.580427e-05	k: 18	n:1800000
Cons ci ratio: 1.959997e+00	ci left: 3.437069e-07	ci right 4.870699e-06	k: 3	n:1800000
KS ci ratio: 1.036530e-02	ci left: 7.322726e-02	ci right 7.399078e-02	k: 132495	n:1800000
SEC14L1   1800000 perm   1612 sec   (1117 perm/sec)   p_kst 7.360833e-02   p_cons 1.666667e-06   p_joint 1.000000e-05

Joint ci ratio: 8.993047e-01	ci left: 5.893900e-06	ci right 1.571695e-05	k: 18	n:1810000
Cons ci ratio: 1.959997e+00	ci left: 3.418079e-07	ci right 4.843790e-06	k: 3	n:1810000
KS ci ratio: 1.033650e-02	ci left: 7.322992e-02	ci right 7.399133e-02	k: 133234	n:1810000
SEC14L1   1810000 perm   1628 sec   (1112 perm/sec)   p_kst 7.360994e-02   p_cons 1.657459e-06   p_joint 9.944751e-06

Joint ci ratio: 8.993047e-01	ci left: 5.861516e-06	ci right 1.563059e-05	k: 18	n:1820000
Cons ci ratio: 1.959997e+00	ci left: 3.399299e-07	ci right 4.817175e-06	k: 3	n:1820000
KS ci ratio: 1.030736e-02	ci left: 7.324023e-02	ci right 7.399959e-02	k: 133987	n:1820000
SEC14L1   1820000 perm   1644 sec   (1107 perm/sec)   p_kst 7.361923e-02   p_cons 1.648352e-06   p_joint 9.890110e-06

Joint ci ratio: 8.765336e-01	ci left: 6.250963e-06	ci right 1.621353e-05	k: 19	n:1830000
Cons ci ratio: 1.959997e+00	ci left: 3.380723e-07	ci right 4.790852e-06	k: 3	n:1830000
KS ci ratio: 1.027839e-02	ci left: 7.325152e-02	ci right 7.400885e-02	k: 134742	n:1830000
SEC14L1   1830000 perm   1661 sec   (1102 perm/sec)   p_kst 7.362951e-02   p_cons 1.639344e-06   p_joint 1.038251e-05

Joint ci ratio: 8.765336e-01	ci left: 6.216990e-06	ci right 1.612542e-05	k: 19	n:1840000
Cons ci ratio: 1.959997e+00	ci left: 3.362350e-07	ci right 4.764815e-06	k: 3	n:1840000
KS ci ratio: 1.025264e-02	ci left: 7.322311e-02	ci right 7.397824e-02	k: 135424	n:1840000
SEC14L1   1840000 perm   1677 sec   (1097 perm/sec)   p_kst 7.360000e-02   p_cons 1.630435e-06   p_joint 1.032609e-05

Joint ci ratio: 8.765337e-01	ci left: 6.183385e-06	ci right 1.603825e-05	k: 19	n:1850000
Cons ci ratio: 1.959997e+00	ci left: 3.344175e-07	ci right 4.739059e-06	k: 3	n:1850000
KS ci ratio: 1.022566e-02	ci left: 7.321388e-02	ci right 7.396691e-02	k: 136141	n:1850000
SEC14L1   1850000 perm   1694 sec   (1092 perm/sec)   p_kst 7.358973e-02   p_cons 1.621622e-06   p_joint 1.027027e-05

Joint ci ratio: 8.765337e-01	ci left: 6.150141e-06	ci right 1.595203e-05	k: 19	n:1860000
Cons ci ratio: 1.959997e+00	ci left: 3.326195e-07	ci right 4.713580e-06	k: 3	n:1860000
KS ci ratio: 1.019785e-02	ci left: 7.321870e-02	ci right 7.396972e-02	k: 136884	n:1860000
SEC14L1   1860000 perm   1711 sec   (1087 perm/sec)   p_kst 7.359355e-02   p_cons 1.612903e-06   p_joint 1.021505e-05

Joint ci ratio: 8.765337e-01	ci left: 6.117252e-06	ci right 1.586672e-05	k: 19	n:1870000
Cons ci ratio: 1.959997e+00	ci left: 3.308408e-07	ci right 4.688374e-06	k: 3	n:1870000
KS ci ratio: 1.017230e-02	ci left: 7.319626e-02	ci right 7.394516e-02	k: 137576	n:1870000
SEC14L1   1870000 perm   1727 sec   (1083 perm/sec)   p_kst 7.357005e-02   p_cons 1.604278e-06   p_joint 1.016043e-05

Joint ci ratio: 8.765338e-01	ci left: 6.084713e-06	ci right 1.578232e-05	k: 19	n:1880000
Cons ci ratio: 1.959997e+00	ci left: 3.290810e-07	ci right 4.663436e-06	k: 3	n:1880000
KS ci ratio: 1.014528e-02	ci left: 7.319636e-02	ci right 7.394326e-02	k: 138310	n:1880000
SEC14L1   1880000 perm   1744 sec   (1078 perm/sec)   p_kst 7.356915e-02   p_cons 1.595745e-06   p_joint 1.010638e-05

Joint ci ratio: 8.765338e-01	ci left: 6.052519e-06	ci right 1.569882e-05	k: 19	n:1890000
Cons ci ratio: 1.959997e+00	ci left: 3.273399e-07	ci right 4.638762e-06	k: 3	n:1890000
KS ci ratio: 1.011702e-02	ci left: 7.321598e-02	ci right 7.396099e-02	k: 139081	n:1890000
SEC14L1   1890000 perm   1760 sec   (1074 perm/sec)   p_kst 7.358783e-02   p_cons 1.587302e-06   p_joint 1.005291e-05

Joint ci ratio: 8.765338e-01	ci left: 6.020664e-06	ci right 1.561619e-05	k: 19	n:1900000
Cons ci ratio: 1.959997e+00	ci left: 3.256170e-07	ci right 4.614347e-06	k: 3	n:1900000
KS ci ratio: 1.009008e-02	ci left: 7.322070e-02	ci right 7.396376e-02	k: 139824	n:1900000
SEC14L1   1900000 perm   1777 sec   (1069 perm/sec)   p_kst 7.359158e-02   p_cons 1.578947e-06   p_joint 1.000000e-05

Joint ci ratio: 8.765338e-01	ci left: 5.989142e-06	ci right 1.553443e-05	k: 19	n:1910000
Cons ci ratio: 1.959997e+00	ci left: 3.239122e-07	ci right 4.590188e-06	k: 3	n:1910000
KS ci ratio: 1.006216e-02	ci left: 7.324156e-02	ci right 7.398277e-02	k: 140598	n:1910000
SEC14L1   1910000 perm   1794 sec   (1065 perm/sec)   p_kst 7.361152e-02   p_cons 1.570681e-06   p_joint 9.947644e-06

Joint ci ratio: 8.765339e-01	ci left: 5.957948e-06	ci right 1.545353e-05	k: 19	n:1920000
Cons ci ratio: 1.959997e+00	ci left: 3.222252e-07	ci right 4.566281e-06	k: 3	n:1920000
KS ci ratio: 1.003673e-02	ci left: 7.323155e-02	ci right 7.397077e-02	k: 141313	n:1920000
SEC14L1   1920000 perm   1811 sec   (1060 perm/sec)   p_kst 7.360052e-02   p_cons 1.562500e-06   p_joint 9.895833e-06

Joint ci ratio: 8.765339e-01	ci left: 5.927078e-06	ci right 1.537346e-05	k: 19	n:1930000
Cons ci ratio: 1.959997e+00	ci left: 3.205556e-07	ci right 4.542622e-06	k: 3	n:1930000
KS ci ratio: 1.000857e-02	ci left: 7.326146e-02	ci right 7.399889e-02	k: 142105	n:1930000
SEC14L1   1930000 perm   1828 sec   (1056 perm/sec)   p_kst 7.362953e-02   p_cons 1.554404e-06   p_joint 9.844560e-06

Joint ci ratio: 8.765339e-01	ci left: 5.896526e-06	ci right 1.529421e-05	k: 19	n:1940000
Cons ci ratio: 1.959997e+00	ci left: 3.189033e-07	ci right 4.519206e-06	k: 3	n:1940000
KS ci ratio: 9.983431e-03	ci left: 7.325300e-02	ci right 7.398848e-02	k: 142823	n:1940000
SEC14L1   1940000 perm   1846 sec   (1051 perm/sec)   p_kst 7.362010e-02   p_cons 1.546392e-06   p_joint 9.793814e-06

Joint ci ratio: 8.765339e-01	ci left: 5.866287e-06	ci right 1.521578e-05	k: 19	n:1950000
Cons ci ratio: 1.959997e+00	ci left: 3.172679e-07	ci right 4.496031e-06	k: 3	n:1950000
KS ci ratio: 9.956198e-03	ci left: 7.327584e-02	ci right 7.400953e-02	k: 143602	n:1950000
SEC14L1   1950000 perm   1863 sec   (1047 perm/sec)   p_kst 7.364205e-02   p_cons 1.538462e-06   p_joint 9.743590e-06

Joint ci ratio: 8.765340e-01	ci left: 5.836357e-06	ci right 1.513815e-05	k: 19	n:1960000
Cons ci ratio: 1.959998e+00	ci left: 3.156492e-07	ci right 4.473092e-06	k: 3	n:1960000
KS ci ratio: 9.929706e-03	ci left: 7.329132e-02	ci right 7.402321e-02	k: 144367	n:1960000
SEC14L1   1960000 perm   1880 sec   (1042 perm/sec)   p_kst 7.365663e-02   p_cons 1.530612e-06   p_joint 9.693878e-06

Joint ci ratio: 8.765340e-01	ci left: 5.806731e-06	ci right 1.506131e-05	k: 19	n:1970000
Cons ci ratio: 1.959998e+00	ci left: 3.140469e-07	ci right 4.450386e-06	k: 3	n:1970000
KS ci ratio: 9.904640e-03	ci left: 7.328993e-02	ci right 7.401995e-02	k: 145099	n:1970000
SEC14L1   1970000 perm   1898 sec   (1038 perm/sec)   p_kst 7.365431e-02   p_cons 1.522843e-06   p_joint 9.644670e-06

Joint ci ratio: 8.765340e-01	ci left: 5.777404e-06	ci right 1.498524e-05	k: 19	n:1980000
Cons ci ratio: 1.959998e+00	ci left: 3.124608e-07	ci right 4.427909e-06	k: 3	n:1980000
KS ci ratio: 9.880348e-03	ci left: 7.328050e-02	ci right 7.400862e-02	k: 145815	n:1980000
SEC14L1   1980000 perm   1915 sec   (1034 perm/sec)   p_kst 7.364394e-02   p_cons 1.515152e-06   p_joint 9.595960e-06

Joint ci ratio: 8.765340e-01	ci left: 5.748372e-06	ci right 1.490994e-05	k: 19	n:1990000
Cons ci ratio: 1.959998e+00	ci left: 3.108906e-07	ci right 4.405658e-06	k: 3	n:1990000
KS ci ratio: 9.854601e-03	ci left: 7.329373e-02	ci right 7.402007e-02	k: 146576	n:1990000
SEC14L1   1990000 perm   1933 sec   (1030 perm/sec)   p_kst 7.365628e-02   p_cons 1.507538e-06   p_joint 9.547739e-06

Joint ci ratio: 8.765340e-01	ci left: 5.719630e-06	ci right 1.483539e-05	k: 19	n:2000000
Cons ci ratio: 1.959998e+00	ci left: 3.093362e-07	ci right 4.383630e-06	k: 3	n:2000000
KS ci ratio: 9.828909e-03	ci left: 7.330882e-02	ci right 7.403341e-02	k: 147341	n:2000000
SEC14L1   2000000 perm   1951 sec   (1025 perm/sec)   p_kst 7.367050e-02   p_cons 1.500000e-06   p_joint 9.500000e-06

Joint ci ratio: 8.765341e-01	ci left: 5.691174e-06	ci right 1.476158e-05	k: 19	n:2010000
Cons ci ratio: 1.959998e+00	ci left: 3.077972e-07	ci right 4.361821e-06	k: 3	n:2010000
KS ci ratio: 9.804383e-03	ci left: 7.331037e-02	ci right 7.403315e-02	k: 148079	n:2010000
SEC14L1   2010000 perm   1968 sec   (1021 perm/sec)   p_kst 7.367114e-02   p_cons 1.492537e-06   p_joint 9.452736e-06

Joint ci ratio: 8.765341e-01	ci left: 5.663000e-06	ci right 1.468850e-05	k: 19	n:2020000
Cons ci ratio: 1.959998e+00	ci left: 3.062734e-07	ci right 4.340228e-06	k: 3	n:2020000
KS ci ratio: 9.779720e-03	ci left: 7.331634e-02	ci right 7.403736e-02	k: 148826	n:2020000
SEC14L1   2020000 perm   1986 sec   (1017 perm/sec)   p_kst 7.367624e-02   p_cons 1.485149e-06   p_joint 9.405941e-06

Joint ci ratio: 8.765341e-01	ci left: 5.635103e-06	ci right 1.461615e-05	k: 19	n:2030000
Cons ci ratio: 1.959998e+00	ci left: 3.047647e-07	ci right 4.318848e-06	k: 3	n:2030000
KS ci ratio: 9.757108e-03	ci left: 7.329621e-02	ci right 7.401535e-02	k: 149520	n:2030000
SEC14L1   2030000 perm   2004 sec   (1013 perm/sec)   p_kst 7.365517e-02   p_cons 1.477833e-06   p_joint 9.359606e-06

Joint ci ratio: 8.554095e-01	ci left: 5.988500e-06	ci right 1.514132e-05	k: 20	n:2040000
Cons ci ratio: 1.753075e+00	ci left: 5.342480e-07	ci right 5.020379e-06	k: 4	n:2040000
KS ci ratio: 9.732904e-03	ci left: 7.330073e-02	ci right 7.401813e-02	k: 150264	n:2040000
SEC14L1   2040000 perm   2022 sec   (1009 perm/sec)   p_kst 7.365882e-02   p_cons 1.960784e-06   p_joint 9.803922e-06

Joint ci ratio: 8.554095e-01	ci left: 5.959288e-06	ci right 1.506746e-05	k: 20	n:2050000
Cons ci ratio: 1.753075e+00	ci left: 5.316419e-07	ci right 4.995889e-06	k: 4	n:2050000
KS ci ratio: 9.709885e-03	ci left: 7.329110e-02	ci right 7.400669e-02	k: 150979	n:2050000
SEC14L1   2050000 perm   2040 sec   (1005 perm/sec)   p_kst 7.364829e-02   p_cons 1.951220e-06   p_joint 9.756098e-06

Joint ci ratio: 8.554096e-01	ci left: 5.930359e-06	ci right 1.499432e-05	k: 20	n:2060000
Cons ci ratio: 1.753075e+00	ci left: 5.290611e-07	ci right 4.971637e-06	k: 4	n:2060000
KS ci ratio: 9.686065e-03	ci left: 7.329512e-02	ci right 7.400899e-02	k: 151722	n:2060000
SEC14L1   2060000 perm   2058 sec   (1001 perm/sec)   p_kst 7.365146e-02   p_cons 1.941748e-06   p_joint 9.708738e-06

Joint ci ratio: 8.554096e-01	ci left: 5.901710e-06	ci right 1.492188e-05	k: 20	n:2070000
Cons ci ratio: 1.753075e+00	ci left: 5.265053e-07	ci right 4.947620e-06	k: 4	n:2070000
KS ci ratio: 9.662795e-03	ci left: 7.329381e-02	ci right 7.400594e-02	k: 152454	n:2070000
SEC14L1   2070000 perm   2077 sec   (997 perm/sec)   p_kst 7.364928e-02   p_cons 1.932367e-06   p_joint 9.661836e-06

Joint ci ratio: 8.554096e-01	ci left: 5.873336e-06	ci right 1.485014e-05	k: 20	n:2080000
Cons ci ratio: 1.753075e+00	ci left: 5.239740e-07	ci right 4.923833e-06	k: 4	n:2080000
KS ci ratio: 9.639216e-03	ci left: 7.329922e-02	ci right 7.400966e-02	k: 153200	n:2080000
SEC14L1   2080000 perm   2095 sec   (993 perm/sec)   p_kst 7.365385e-02   p_cons 1.923077e-06   p_joint 9.615385e-06

Joint ci ratio: 8.554096e-01	ci left: 5.845234e-06	ci right 1.477909e-05	k: 20	n:2090000
Cons ci ratio: 1.753075e+00	ci left: 5.214669e-07	ci right 4.900274e-06	k: 4	n:2090000
KS ci ratio: 9.615236e-03	ci left: 7.331270e-02	ci right 7.402149e-02	k: 153963	n:2090000
SEC14L1   2090000 perm   2114 sec   (989 perm/sec)   p_kst 7.366651e-02   p_cons 1.913876e-06   p_joint 9.569378e-06

Joint ci ratio: 8.554096e-01	ci left: 5.817400e-06	ci right 1.470871e-05	k: 20	n:2100000
Cons ci ratio: 1.753075e+00	ci left: 5.189837e-07	ci right 4.876940e-06	k: 4	n:2100000
KS ci ratio: 9.590565e-03	ci left: 7.333841e-02	ci right 7.404562e-02	k: 154752	n:2100000
SEC14L1   2100000 perm   2132 sec   (985 perm/sec)   p_kst 7.369143e-02   p_cons 1.904762e-06   p_joint 9.523810e-06

Joint ci ratio: 8.554097e-01	ci left: 5.789829e-06	ci right 1.463900e-05	k: 20	n:2110000
Cons ci ratio: 1.753075e+00	ci left: 5.165241e-07	ci right 4.853826e-06	k: 4	n:2110000
KS ci ratio: 9.567310e-03	ci left: 7.334638e-02	ci right 7.405194e-02	k: 155504	n:2110000
SEC14L1   2110000 perm   2151 sec   (981 perm/sec)   p_kst 7.369858e-02   p_cons 1.895735e-06   p_joint 9.478673e-06

Joint ci ratio: 8.554097e-01	ci left: 5.762518e-06	ci right 1.456995e-05	k: 20	n:2120000
Cons ci ratio: 1.753075e+00	ci left: 5.140877e-07	ci right 4.830931e-06	k: 4	n:2120000
KS ci ratio: 9.545510e-03	ci left: 7.333592e-02	ci right 7.403977e-02	k: 156217	n:2120000
SEC14L1   2120000 perm   2170 sec   (977 perm/sec)   p_kst 7.368726e-02   p_cons 1.886792e-06   p_joint 9.433962e-06

Joint ci ratio: 8.554097e-01	ci left: 5.735464e-06	ci right 1.450155e-05	k: 20	n:2130000
Cons ci ratio: 1.753075e+00	ci left: 5.116741e-07	ci right 4.808251e-06	k: 4	n:2130000
KS ci ratio: 9.523171e-03	ci left: 7.333540e-02	ci right 7.403759e-02	k: 156951	n:2130000
SEC14L1   2130000 perm   2188 sec   (973 perm/sec)   p_kst 7.368592e-02   p_cons 1.877934e-06   p_joint 9.389671e-06

Joint ci ratio: 8.554097e-01	ci left: 5.708663e-06	ci right 1.443378e-05	k: 20	n:2140000
Cons ci ratio: 1.753075e+00	ci left: 5.092831e-07	ci right 4.785782e-06	k: 4	n:2140000
KS ci ratio: 9.501768e-03	ci left: 7.332370e-02	ci right 7.402418e-02	k: 157661	n:2140000
SEC14L1   2140000 perm   2207 sec   (970 perm/sec)   p_kst 7.367336e-02   p_cons 1.869159e-06   p_joint 9.345794e-06

Joint ci ratio: 8.554098e-01	ci left: 5.682111e-06	ci right 1.436665e-05	k: 20	n:2150000
Cons ci ratio: 1.753075e+00	ci left: 5.069144e-07	ci right 4.763523e-06	k: 4	n:2150000
KS ci ratio: 9.480380e-03	ci left: 7.331396e-02	ci right 7.401277e-02	k: 158375	n:2150000
SEC14L1   2150000 perm   2226 sec   (966 perm/sec)   p_kst 7.366279e-02   p_cons 1.860465e-06   p_joint 9.302326e-06

Joint ci ratio: 8.554098e-01	ci left: 5.655805e-06	ci right 1.430014e-05	k: 20	n:2160000
Cons ci ratio: 1.753075e+00	ci left: 5.045675e-07	ci right 4.741469e-06	k: 4	n:2160000
KS ci ratio: 9.456344e-03	ci left: 7.334451e-02	ci right 7.404182e-02	k: 159176	n:2160000
SEC14L1   2160000 perm   2245 sec   (962 perm/sec)   p_kst 7.369259e-02   p_cons 1.851852e-06   p_joint 9.259259e-06

Joint ci ratio: 8.554098e-01	ci left: 5.629741e-06	ci right 1.423424e-05	k: 20	n:2170000
Cons ci ratio: 1.753075e+00	ci left: 5.022423e-07	ci right 4.719619e-06	k: 4	n:2170000
KS ci ratio: 9.434401e-03	ci left: 7.334718e-02	ci right 7.404290e-02	k: 159917	n:2170000
SEC14L1   2170000 perm   2264 sec   (959 perm/sec)   p_kst 7.369447e-02   p_cons 1.843318e-06   p_joint 9.216590e-06

Joint ci ratio: 8.554098e-01	ci left: 5.603917e-06	ci right 1.416895e-05	k: 20	n:2180000
Cons ci ratio: 1.753075e+00	ci left: 4.999385e-07	ci right 4.697970e-06	k: 4	n:2180000
KS ci ratio: 9.413305e-03	ci left: 7.333977e-02	ci right 7.403384e-02	k: 160636	n:2180000
SEC14L1   2180000 perm   2283 sec   (955 perm/sec)   p_kst 7.368624e-02   p_cons 1.834862e-06   p_joint 9.174312e-06

Joint ci ratio: 8.554098e-01	ci left: 5.578328e-06	ci right 1.410425e-05	k: 20	n:2190000
Cons ci ratio: 1.753075e+00	ci left: 4.976556e-07	ci right 4.676518e-06	k: 4	n:2190000
KS ci ratio: 9.392633e-03	ci left: 7.332832e-02	ci right 7.402076e-02	k: 161346	n:2190000
SEC14L1   2190000 perm   2302 sec   (951 perm/sec)   p_kst 7.367397e-02   p_cons 1.826484e-06   p_joint 9.132420e-06

Joint ci ratio: 8.554099e-01	ci left: 5.552972e-06	ci right 1.404014e-05	k: 20	n:2200000
Cons ci ratio: 1.753075e+00	ci left: 4.953936e-07	ci right 4.655261e-06	k: 4	n:2200000
KS ci ratio: 9.371753e-03	ci left: 7.332196e-02	ci right 7.401280e-02	k: 162067	n:2200000
SEC14L1   2200000 perm   2321 sec   (948 perm/sec)   p_kst 7.366682e-02   p_cons 1.818182e-06   p_joint 9.090909e-06

Joint ci ratio: 8.554099e-01	ci left: 5.527845e-06	ci right 1.397661e-05	k: 20	n:2210000
Cons ci ratio: 1.753075e+00	ci left: 4.931520e-07	ci right 4.634196e-06	k: 4	n:2210000
KS ci ratio: 9.350144e-03	ci left: 7.332831e-02	ci right 7.401760e-02	k: 162816	n:2210000
SEC14L1   2210000 perm   2341 sec   (944 perm/sec)   p_kst 7.367240e-02   p_cons 1.809955e-06   p_joint 9.049774e-06

Joint ci ratio: 8.554099e-01	ci left: 5.502945e-06	ci right 1.391365e-05	k: 20	n:2220000
Cons ci ratio: 1.753075e+00	ci left: 4.909306e-07	ci right 4.613322e-06	k: 4	n:2220000
KS ci ratio: 9.327976e-03	ci left: 7.334494e-02	ci right 7.403275e-02	k: 163588	n:2220000
SEC14L1   2220000 perm   2360 sec   (941 perm/sec)   p_kst 7.368829e-02   p_cons 1.801802e-06   p_joint 9.009009e-06

Joint ci ratio: 8.554099e-01	ci left: 5.478268e-06	ci right 1.385126e-05	k: 20	n:2230000
Cons ci ratio: 1.753075e+00	ci left: 4.887291e-07	ci right 4.592634e-06	k: 4	n:2230000
KS ci ratio: 9.307217e-03	ci left: 7.334308e-02	ci right 7.402933e-02	k: 164319	n:2230000
SEC14L1   2230000 perm   2380 sec   (937 perm/sec)   p_kst 7.368565e-02   p_cons 1.793722e-06   p_joint 8.968610e-06

Joint ci ratio: 8.765345e-01	ci left: 5.106812e-06	ci right 1.324589e-05	k: 19	n:2240000
Cons ci ratio: 1.753075e+00	ci left: 4.865472e-07	ci right 4.572131e-06	k: 4	n:2240000
KS ci ratio: 9.285534e-03	ci left: 7.335683e-02	ci right 7.404160e-02	k: 165085	n:2240000
SEC14L1   2240000 perm   2400 sec   (933 perm/sec)   p_kst 7.369866e-02   p_cons 1.785714e-06   p_joint 8.482143e-06

Joint ci ratio: 8.765346e-01	ci left: 5.084115e-06	ci right 1.318701e-05	k: 19	n:2250000
Cons ci ratio: 1.753075e+00	ci left: 4.843848e-07	ci right 4.551811e-06	k: 4	n:2250000
KS ci ratio: 9.264062e-03	ci left: 7.336957e-02	ci right 7.405286e-02	k: 165849	n:2250000
SEC14L1   2250000 perm   2419 sec   (930 perm/sec)   p_kst 7.371067e-02   p_cons 1.777778e-06   p_joint 8.444444e-06

Joint ci ratio: 8.765346e-01	ci left: 5.061618e-06	ci right 1.312867e-05	k: 19	n:2260000
Cons ci ratio: 1.753075e+00	ci left: 4.822415e-07	ci right 4.531670e-06	k: 4	n:2260000
KS ci ratio: 9.244716e-03	ci left: 7.335306e-02	ci right 7.403476e-02	k: 166547	n:2260000
SEC14L1   2260000 perm   2439 sec   (927 perm/sec)   p_kst 7.369336e-02   p_cons 1.769912e-06   p_joint 8.407080e-06

Joint ci ratio: 9.239490e-01	ci left: 4.362617e-06	ci right 1.199057e-05	k: 17	n:2270000
Cons ci ratio: 1.753075e+00	ci left: 4.801171e-07	ci right 4.511707e-06	k: 4	n:2270000
KS ci ratio: 9.295426e-03	ci left: 7.231465e-02	ci right 7.299041e-02	k: 164920	n:2270000
SEC14L1   2270000 perm   2459 sec   (923 perm/sec)   p_kst 7.265198e-02   p_cons 1.762115e-06   p_joint 7.488987e-06

Joint ci ratio: 8.993057e-01	ci left: 4.678928e-06	ci right 1.247706e-05	k: 18	n:2280000
Cons ci ratio: 1.753075e+00	ci left: 4.780113e-07	ci right 4.491919e-06	k: 4	n:2280000
KS ci ratio: 9.274219e-03	ci left: 7.232698e-02	ci right 7.300130e-02	k: 165673	n:2280000
SEC14L1   2280000 perm   2478 sec   (920 perm/sec)   p_kst 7.266360e-02   p_cons 1.754386e-06   p_joint 7.894737e-06

Joint ci ratio: 8.993057e-01	ci left: 4.658496e-06	ci right 1.242257e-05	k: 18	n:2290000
Cons ci ratio: 1.753075e+00	ci left: 4.759239e-07	ci right 4.472303e-06	k: 4	n:2290000
KS ci ratio: 9.253877e-03	ci left: 7.232874e-02	ci right 7.300160e-02	k: 166402	n:2290000
SEC14L1   2290000 perm   2498 sec   (917 perm/sec)   p_kst 7.266463e-02   p_cons 1.746725e-06   p_joint 7.860262e-06

Joint ci ratio: 8.993058e-01	ci left: 4.638242e-06	ci right 1.236856e-05	k: 18	n:2300000
Cons ci ratio: 1.753075e+00	ci left: 4.738547e-07	ci right 4.452859e-06	k: 4	n:2300000
KS ci ratio: 9.235784e-03	ci left: 7.229969e-02	ci right 7.297095e-02	k: 167060	n:2300000
SEC14L1   2300000 perm   2519 sec   (913 perm/sec)   p_kst 7.263478e-02   p_cons 1.739130e-06   p_joint 7.826087e-06

Joint ci ratio: 8.993058e-01	ci left: 4.618163e-06	ci right 1.231502e-05	k: 18	n:2310000
Cons ci ratio: 1.753075e+00	ci left: 4.718034e-07	ci right 4.433582e-06	k: 4	n:2310000
KS ci ratio: 9.214893e-03	ci left: 7.231322e-02	ci right 7.298309e-02	k: 167816	n:2310000
SEC14L1   2310000 perm   2540 sec   (910 perm/sec)   p_kst 7.264762e-02   p_cons 1.731602e-06   p_joint 7.792208e-06

Joint ci ratio: 1.012136e+00	ci left: 3.299112e-06	ci right 1.012482e-05	k: 14	n:2320000
Cons ci ratio: 1.753075e+00	ci left: 4.697698e-07	ci right 4.414472e-06	k: 4	n:2320000
KS ci ratio: 9.195026e-03	ci left: 7.231374e-02	ci right 7.298216e-02	k: 168542	n:2320000
SEC14L1   2320000 perm   2560 sec   (906 perm/sec)   p_kst 7.264741e-02   p_cons 1.724138e-06   p_joint 6.034483e-06

Joint ci ratio: 1.012136e+00	ci left: 3.284952e-06	ci right 1.008136e-05	k: 14	n:2330000
Cons ci ratio: 1.753075e+00	ci left: 4.677536e-07	ci right 4.395526e-06	k: 4	n:2330000
KS ci ratio: 9.175989e-03	ci left: 7.230397e-02	ci right 7.297091e-02	k: 169244	n:2330000
SEC14L1   2330000 perm   2581 sec   (903 perm/sec)   p_kst 7.263691e-02   p_cons 1.716738e-06   p_joint 6.008584e-06

Joint ci ratio: 1.012136e+00	ci left: 3.270914e-06	ci right 1.003828e-05	k: 14	n:2340000
Cons ci ratio: 1.753075e+00	ci left: 4.657546e-07	ci right 4.376741e-06	k: 4	n:2340000
KS ci ratio: 9.157999e-03	ci left: 7.228065e-02	ci right 7.294605e-02	k: 169914	n:2340000
SEC14L1   2340000 perm   2601 sec   (900 perm/sec)   p_kst 7.261282e-02   p_cons 1.709402e-06   p_joint 5.982906e-06

Joint ci ratio: 1.012136e+00	ci left: 3.256995e-06	ci right 9.995563e-06	k: 14	n:2350000
Cons ci ratio: 1.753075e+00	ci left: 4.637727e-07	ci right 4.358117e-06	k: 4	n:2350000
KS ci ratio: 9.137775e-03	ci left: 7.229192e-02	ci right 7.295595e-02	k: 170665	n:2350000
SEC14L1   2350000 perm   2622 sec   (896 perm/sec)   p_kst 7.262340e-02   p_cons 1.702128e-06   p_joint 5.957447e-06

Joint ci ratio: 9.799965e-01	ci left: 3.557371e-06	ci right 1.048312e-05	k: 15	n:2360000
Cons ci ratio: 1.753075e+00	ci left: 4.618075e-07	ci right 4.339650e-06	k: 4	n:2360000
KS ci ratio: 9.118602e-03	ci left: 7.228956e-02	ci right 7.295217e-02	k: 171384	n:2360000
SEC14L1   2360000 perm   2643 sec   (893 perm/sec)   p_kst 7.262034e-02   p_cons 1.694915e-06   p_joint 6.355932e-06

Joint ci ratio: 9.799965e-01	ci left: 3.542361e-06	ci right 1.043889e-05	k: 15	n:2370000
Cons ci ratio: 1.753075e+00	ci left: 4.598590e-07	ci right 4.321340e-06	k: 4	n:2370000
KS ci ratio: 9.098666e-03	ci left: 7.230028e-02	ci right 7.296153e-02	k: 172134	n:2370000
SEC14L1   2370000 perm   2664 sec   (890 perm/sec)   p_kst 7.263038e-02   p_cons 1.687764e-06   p_joint 6.329114e-06

Joint ci ratio: 9.799965e-01	ci left: 3.527477e-06	ci right 1.039503e-05	k: 15	n:2380000
Cons ci ratio: 1.753075e+00	ci left: 4.579268e-07	ci right 4.303183e-06	k: 4	n:2380000
KS ci ratio: 9.079625e-03	ci left: 7.229958e-02	ci right 7.295944e-02	k: 172857	n:2380000
SEC14L1   2380000 perm   2685 sec   (886 perm/sec)   p_kst 7.262899e-02   p_cons 1.680672e-06   p_joint 6.302521e-06

Joint ci ratio: 9.799965e-01	ci left: 3.512718e-06	ci right 1.035153e-05	k: 15	n:2390000
Cons ci ratio: 1.753075e+00	ci left: 4.560108e-07	ci right 4.285178e-06	k: 4	n:2390000
KS ci ratio: 9.060506e-03	ci left: 7.230182e-02	ci right 7.296030e-02	k: 173587	n:2390000
SEC14L1   2390000 perm   2706 sec   (883 perm/sec)   p_kst 7.263054e-02   p_cons 1.673640e-06   p_joint 6.276151e-06

Joint ci ratio: 9.799965e-01	ci left: 3.498082e-06	ci right 1.030840e-05	k: 15	n:2400000
Cons ci ratio: 1.753075e+00	ci left: 4.541108e-07	ci right 4.267323e-06	k: 4	n:2400000
KS ci ratio: 9.042122e-03	ci left: 7.229490e-02	ci right 7.295197e-02	k: 174295	n:2400000
SEC14L1   2400000 perm   2726 sec   (880 perm/sec)   p_kst 7.262292e-02   p_cons 1.666667e-06   p_joint 6.250000e-06

Joint ci ratio: 9.799965e-01	ci left: 3.483567e-06	ci right 1.026563e-05	k: 15	n:2410000
Cons ci ratio: 1.753075e+00	ci left: 4.522265e-07	ci right 4.249616e-06	k: 4	n:2410000
KS ci ratio: 9.023572e-03	ci left: 7.229217e-02	ci right 7.294786e-02	k: 175013	n:2410000
SEC14L1   2410000 perm   2747 sec   (877 perm/sec)   p_kst 7.261950e-02   p_cons 1.659751e-06   p_joint 6.224066e-06

Joint ci ratio: 9.799966e-01	ci left: 3.469172e-06	ci right 1.022321e-05	k: 15	n:2420000
Cons ci ratio: 1.753075e+00	ci left: 4.503578e-07	ci right 4.232056e-06	k: 4	n:2420000
KS ci ratio: 9.005052e-03	ci left: 7.229070e-02	ci right 7.294503e-02	k: 175734	n:2420000
SEC14L1   2420000 perm   2769 sec   (874 perm/sec)   p_kst 7.261736e-02   p_cons 1.652893e-06   p_joint 6.198347e-06

Joint ci ratio: 9.799966e-01	ci left: 3.454895e-06	ci right 1.018114e-05	k: 15	n:2430000
Cons ci ratio: 1.753075e+00	ci left: 4.485044e-07	ci right 4.214640e-06	k: 4	n:2430000
KS ci ratio: 8.987443e-03	ci left: 7.227734e-02	ci right 7.293026e-02	k: 176426	n:2430000
SEC14L1   2430000 perm   2790 sec   (871 perm/sec)   p_kst 7.260329e-02   p_cons 1.646091e-06   p_joint 6.172840e-06

Joint ci ratio: 9.799966e-01	ci left: 3.440736e-06	ci right 1.013941e-05	k: 15	n:2440000
Cons ci ratio: 1.753075e+00	ci left: 4.466663e-07	ci right 4.197367e-06	k: 4	n:2440000
KS ci ratio: 8.968326e-03	ci left: 7.228822e-02	ci right 7.293984e-02	k: 177177	n:2440000
SEC14L1   2440000 perm   2812 sec   (868 perm/sec)   p_kst 7.261352e-02   p_cons 1.639344e-06   p_joint 6.147541e-06

Joint ci ratio: 9.799966e-01	ci left: 3.426692e-06	ci right 1.009803e-05	k: 15	n:2450000
Cons ci ratio: 1.753075e+00	ci left: 4.448432e-07	ci right 4.180235e-06	k: 4	n:2450000
KS ci ratio: 8.949167e-03	ci left: 7.230146e-02	ci right 7.295180e-02	k: 177934	n:2450000
SEC14L1   2450000 perm   2834 sec   (864 perm/sec)   p_kst 7.262612e-02   p_cons 1.632653e-06   p_joint 6.122449e-06

Joint ci ratio: 9.799966e-01	ci left: 3.412762e-06	ci right 1.005698e-05	k: 15	n:2460000
Cons ci ratio: 1.753075e+00	ci left: 4.430349e-07	ci right 4.163242e-06	k: 4	n:2460000
KS ci ratio: 8.930805e-03	ci left: 7.230444e-02	ci right 7.295347e-02	k: 178666	n:2460000
SEC14L1   2460000 perm   2856 sec   (861 perm/sec)   p_kst 7.262846e-02   p_cons 1.626016e-06   p_joint 6.097561e-06

Joint ci ratio: 9.799966e-01	ci left: 3.398946e-06	ci right 1.001626e-05	k: 15	n:2470000
Cons ci ratio: 1.753075e+00	ci left: 4.412412e-07	ci right 4.146387e-06	k: 4	n:2470000
KS ci ratio: 8.912261e-03	ci left: 7.231185e-02	ci right 7.295959e-02	k: 179409	n:2470000
SEC14L1   2470000 perm   2878 sec   (858 perm/sec)   p_kst 7.263522e-02   p_cons 1.619433e-06   p_joint 6.072874e-06

Joint ci ratio: 9.799966e-01	ci left: 3.385240e-06	ci right 9.975875e-06	k: 15	n:2480000
Cons ci ratio: 1.753075e+00	ci left: 4.394620e-07	ci right 4.129668e-06	k: 4	n:2480000
KS ci ratio: 8.894390e-03	ci left: 7.231075e-02	ci right 7.295718e-02	k: 180131	n:2480000
SEC14L1   2480000 perm   2900 sec   (855 perm/sec)   p_kst 7.263347e-02   p_cons 1.612903e-06   p_joint 6.048387e-06

Joint ci ratio: 9.799967e-01	ci left: 3.371645e-06	ci right 9.935811e-06	k: 15	n:2490000
Cons ci ratio: 1.753075e+00	ci left: 4.376971e-07	ci right 4.113083e-06	k: 4	n:2490000
KS ci ratio: 8.876838e-03	ci left: 7.230646e-02	ci right 7.295156e-02	k: 180845	n:2490000
SEC14L1   2490000 perm   2922 sec   (852 perm/sec)   p_kst 7.262851e-02   p_cons 1.606426e-06   p_joint 6.024096e-06

Joint ci ratio: 9.799967e-01	ci left: 3.358158e-06	ci right 9.896068e-06	k: 15	n:2500000
Cons ci ratio: 1.753075e+00	ci left: 4.359463e-07	ci right 4.096630e-06	k: 4	n:2500000
KS ci ratio: 8.859653e-03	ci left: 7.229821e-02	ci right 7.294198e-02	k: 181549	n:2500000
SEC14L1   2500000 perm   2944 sec   (849 perm/sec)   p_kst 7.261960e-02   p_cons 1.600000e-06   p_joint 6.000000e-06

Joint ci ratio: 9.799967e-01	ci left: 3.344779e-06	ci right 9.856642e-06	k: 15	n:2510000
Cons ci ratio: 1.753075e+00	ci left: 4.342095e-07	ci right 4.080309e-06	k: 4	n:2510000
KS ci ratio: 8.842306e-03	ci left: 7.229400e-02	ci right 7.293647e-02	k: 182263	n:2510000
SEC14L1   2510000 perm   2966 sec   (846 perm/sec)   p_kst 7.261474e-02   p_cons 1.593625e-06   p_joint 5.976096e-06

Joint ci ratio: 9.799967e-01	ci left: 3.331506e-06	ci right 9.817528e-06	k: 15	n:2520000
Cons ci ratio: 1.753075e+00	ci left: 4.324864e-07	ci right 4.064117e-06	k: 4	n:2520000
KS ci ratio: 8.824852e-03	ci left: 7.229299e-02	ci right 7.293418e-02	k: 182985	n:2520000
SEC14L1   2520000 perm   2988 sec   (843 perm/sec)   p_kst 7.261310e-02   p_cons 1.587302e-06   p_joint 5.952381e-06

Joint ci ratio: 9.799967e-01	ci left: 3.318338e-06	ci right 9.778724e-06	k: 15	n:2530000
Cons ci ratio: 1.753075e+00	ci left: 4.307770e-07	ci right 4.048054e-06	k: 4	n:2530000
KS ci ratio: 8.806287e-03	ci left: 7.231054e-02	ci right 7.295052e-02	k: 183754	n:2530000
SEC14L1   2530000 perm   3010 sec   (840 perm/sec)   p_kst 7.263004e-02   p_cons 1.581028e-06   p_joint 5.928854e-06

Joint ci ratio: 9.507363e-01	ci left: 3.600548e-06	ci right 1.022951e-05	k: 16	n:2540000
Cons ci ratio: 1.600331e+00	ci left: 6.391682e-07	ci right 4.593825e-06	k: 5	n:2540000
KS ci ratio: 8.788300e-03	ci left: 7.232087e-02	ci right 7.295963e-02	k: 184505	n:2540000
SEC14L1   2540000 perm   3032 sec   (838 perm/sec)   p_kst 7.263976e-02   p_cons 1.968504e-06   p_joint 6.299213e-06

Joint ci ratio: 9.507363e-01	ci left: 3.586429e-06	ci right 1.018939e-05	k: 16	n:2550000
Cons ci ratio: 1.600331e+00	ci left: 6.366616e-07	ci right 4.575811e-06	k: 5	n:2550000
KS ci ratio: 8.771062e-03	ci left: 7.232134e-02	ci right 7.295885e-02	k: 185231	n:2550000
SEC14L1   2550000 perm   3055 sec   (835 perm/sec)   p_kst 7.263961e-02   p_cons 1.960784e-06   p_joint 6.274510e-06

Joint ci ratio: 9.507363e-01	ci left: 3.572419e-06	ci right 1.014959e-05	k: 16	n:2560000
Cons ci ratio: 1.600331e+00	ci left: 6.341747e-07	ci right 4.557936e-06	k: 5	n:2560000
KS ci ratio: 8.753924e-03	ci left: 7.232181e-02	ci right 7.295807e-02	k: 185957	n:2560000
SEC14L1   2560000 perm   3078 sec   (832 perm/sec)   p_kst 7.263945e-02   p_cons 1.953125e-06   p_joint 6.250000e-06

Joint ci ratio: 9.507363e-01	ci left: 3.558519e-06	ci right 1.011010e-05	k: 16	n:2570000
Cons ci ratio: 1.600331e+00	ci left: 6.317071e-07	ci right 4.540201e-06	k: 5	n:2570000
KS ci ratio: 8.737316e-03	ci left: 7.231567e-02	ci right 7.295066e-02	k: 186666	n:2570000
SEC14L1   2570000 perm   3100 sec   (829 perm/sec)   p_kst 7.263268e-02   p_cons 1.945525e-06   p_joint 6.225681e-06

Joint ci ratio: 9.507363e-01	ci left: 3.544726e-06	ci right 1.007091e-05	k: 16	n:2580000
Cons ci ratio: 1.600331e+00	ci left: 6.292586e-07	ci right 4.522603e-06	k: 5	n:2580000
KS ci ratio: 8.719371e-03	ci left: 7.233163e-02	ci right 7.296545e-02	k: 187432	n:2580000
SEC14L1   2580000 perm   3123 sec   (826 perm/sec)   p_kst 7.264806e-02   p_cons 1.937984e-06   p_joint 6.201550e-06

Joint ci ratio: 9.507363e-01	ci left: 3.531040e-06	ci right 1.003203e-05	k: 16	n:2590000
Cons ci ratio: 1.600331e+00	ci left: 6.268290e-07	ci right 4.505142e-06	k: 5	n:2590000
KS ci ratio: 8.702809e-03	ci left: 7.232782e-02	ci right 7.296040e-02	k: 188147	n:2590000
SEC14L1   2590000 perm   3146 sec   (823 perm/sec)   p_kst 7.264363e-02   p_cons 1.930502e-06   p_joint 6.177606e-06

Joint ci ratio: 9.507364e-01	ci left: 3.517459e-06	ci right 9.993441e-06	k: 16	n:2600000
Cons ci ratio: 1.600331e+00	ci left: 6.244181e-07	ci right 4.487814e-06	k: 5	n:2600000
KS ci ratio: 8.686340e-03	ci left: 7.232403e-02	ci right 7.295538e-02	k: 188862	n:2600000
SEC14L1   2600000 perm   3168 sec   (821 perm/sec)   p_kst 7.263923e-02   p_cons 1.923077e-06   p_joint 6.153846e-06

Joint ci ratio: 9.507364e-01	ci left: 3.503982e-06	ci right 9.955152e-06	k: 16	n:2610000
Cons ci ratio: 1.600331e+00	ci left: 6.220257e-07	ci right 4.470620e-06	k: 5	n:2610000
KS ci ratio: 8.669644e-03	ci left: 7.232525e-02	ci right 7.295539e-02	k: 189590	n:2610000
SEC14L1   2610000 perm   3191 sec   (818 perm/sec)   p_kst 7.263985e-02   p_cons 1.915709e-06   p_joint 6.130268e-06

Joint ci ratio: 9.507364e-01	ci left: 3.490608e-06	ci right 9.917156e-06	k: 16	n:2620000
Cons ci ratio: 1.600331e+00	ci left: 6.196516e-07	ci right 4.453556e-06	k: 5	n:2620000
KS ci ratio: 8.652701e-03	ci left: 7.233180e-02	ci right 7.296075e-02	k: 190332	n:2620000
SEC14L1   2620000 perm   3214 sec   (815 perm/sec)   p_kst 7.264580e-02   p_cons 1.908397e-06   p_joint 6.106870e-06

Joint ci ratio: 9.507364e-01	ci left: 3.477336e-06	ci right 9.879448e-06	k: 16	n:2630000
Cons ci ratio: 1.600331e+00	ci left: 6.172955e-07	ci right 4.436623e-06	k: 5	n:2630000
KS ci ratio: 8.636173e-03	ci left: 7.233336e-02	ci right 7.296112e-02	k: 191061	n:2630000
SEC14L1   2630000 perm   3237 sec   (813 perm/sec)   p_kst 7.264677e-02   p_cons 1.901141e-06   p_joint 6.083650e-06

Joint ci ratio: 9.507364e-01	ci left: 3.464164e-06	ci right 9.842026e-06	k: 16	n:2640000
Cons ci ratio: 1.600331e+00	ci left: 6.149572e-07	ci right 4.419817e-06	k: 5	n:2640000
KS ci ratio: 8.620734e-03	ci left: 7.231941e-02	ci right 7.294592e-02	k: 191749	n:2640000
SEC14L1   2640000 perm   3260 sec   (810 perm/sec)   p_kst 7.263220e-02   p_cons 1.893939e-06   p_joint 6.060606e-06

Joint ci ratio: 9.507364e-01	ci left: 3.451092e-06	ci right 9.804886e-06	k: 16	n:2650000
Cons ci ratio: 1.600331e+00	ci left: 6.126366e-07	ci right 4.403139e-06	k: 5	n:2650000
KS ci ratio: 8.605594e-03	ci left: 7.230218e-02	ci right 7.292744e-02	k: 192428	n:2650000
SEC14L1   2650000 perm   3283 sec   (807 perm/sec)   p_kst 7.261434e-02   p_cons 1.886792e-06   p_joint 6.037736e-06

Joint ci ratio: 9.507364e-01	ci left: 3.438117e-06	ci right 9.768026e-06	k: 16	n:2660000
Cons ci ratio: 1.600331e+00	ci left: 6.103335e-07	ci right 4.386586e-06	k: 5	n:2660000
KS ci ratio: 8.588567e-03	ci left: 7.231584e-02	ci right 7.293998e-02	k: 193189	n:2660000
SEC14L1   2660000 perm   3306 sec   (805 perm/sec)   p_kst 7.262744e-02   p_cons 1.879699e-06   p_joint 6.015038e-06

Joint ci ratio: 9.507364e-01	ci left: 3.425241e-06	ci right 9.731442e-06	k: 16	n:2670000
Cons ci ratio: 1.600331e+00	ci left: 6.080476e-07	ci right 4.370156e-06	k: 5	n:2670000
KS ci ratio: 8.571617e-03	ci left: 7.232978e-02	ci right 7.295279e-02	k: 193951	n:2670000
SEC14L1   2670000 perm   3329 sec   (802 perm/sec)   p_kst 7.264082e-02   p_cons 1.872659e-06   p_joint 5.992509e-06

Joint ci ratio: 9.507365e-01	ci left: 3.412460e-06	ci right 9.695130e-06	k: 16	n:2680000
Cons ci ratio: 1.600331e+00	ci left: 6.057788e-07	ci right 4.353850e-06	k: 5	n:2680000
KS ci ratio: 8.554483e-03	ci left: 7.234808e-02	ci right 7.297000e-02	k: 194725	n:2680000
SEC14L1   2680000 perm   3352 sec   (800 perm/sec)   p_kst 7.265858e-02   p_cons 1.865672e-06   p_joint 5.970149e-06

Joint ci ratio: 9.507365e-01	ci left: 3.399774e-06	ci right 9.659089e-06	k: 16	n:2690000
Cons ci ratio: 1.600331e+00	ci left: 6.035268e-07	ci right 4.337665e-06	k: 5	n:2690000
KS ci ratio: 8.538558e-03	ci left: 7.234881e-02	ci right 7.296958e-02	k: 195452	n:2690000
SEC14L1   2690000 perm   3375 sec   (797 perm/sec)   p_kst 7.265874e-02   p_cons 1.858736e-06   p_joint 5.947955e-06

Joint ci ratio: 9.507365e-01	ci left: 3.387182e-06	ci right 9.623315e-06	k: 16	n:2700000
Cons ci ratio: 1.600331e+00	ci left: 6.012915e-07	ci right 4.321599e-06	k: 5	n:2700000
KS ci ratio: 8.522722e-03	ci left: 7.234954e-02	ci right 7.296915e-02	k: 196179	n:2700000
SEC14L1   2700000 perm   3398 sec   (795 perm/sec)   p_kst 7.265889e-02   p_cons 1.851852e-06   p_joint 5.925926e-06

Joint ci ratio: 9.507365e-01	ci left: 3.374684e-06	ci right 9.587804e-06	k: 16	n:2710000
Cons ci ratio: 1.600331e+00	ci left: 5.990727e-07	ci right 4.305652e-06	k: 5	n:2710000
KS ci ratio: 8.506461e-03	ci left: 7.235837e-02	ci right 7.297687e-02	k: 196928	n:2710000
SEC14L1   2710000 perm   3421 sec   (792 perm/sec)   p_kst 7.266716e-02   p_cons 1.845018e-06   p_joint 5.904059e-06

Joint ci ratio: 9.239496e-01	ci left: 3.640859e-06	ci right 1.000684e-05	k: 17	n:2720000
Cons ci ratio: 1.600331e+00	ci left: 5.968703e-07	ci right 4.289823e-06	k: 5	n:2720000
KS ci ratio: 8.490177e-03	ci left: 7.236896e-02	ci right 7.298636e-02	k: 197682	n:2720000
SEC14L1   2720000 perm   3444 sec   (790 perm/sec)   p_kst 7.267721e-02   p_cons 1.838235e-06   p_joint 6.250000e-06

Joint ci ratio: 9.239496e-01	ci left: 3.627523e-06	ci right 9.970182e-06	k: 17	n:2730000
Cons ci ratio: 1.600331e+00	ci left: 5.946839e-07	ci right 4.274109e-06	k: 5	n:2730000
KS ci ratio: 8.473893e-03	ci left: 7.238094e-02	ci right 7.299725e-02	k: 198440	n:2730000
SEC14L1   2730000 perm   3467 sec   (787 perm/sec)   p_kst 7.268864e-02   p_cons 1.831502e-06   p_joint 6.227106e-06

Joint ci ratio: 9.239497e-01	ci left: 3.614284e-06	ci right 9.933794e-06	k: 17	n:2740000
Cons ci ratio: 1.600331e+00	ci left: 5.925135e-07	ci right 4.258510e-06	k: 5	n:2740000
KS ci ratio: 8.457727e-03	ci left: 7.239247e-02	ci right 7.300770e-02	k: 199197	n:2740000
SEC14L1   2740000 perm   3489 sec   (785 perm/sec)   p_kst 7.269964e-02   p_cons 1.824818e-06   p_joint 6.204380e-06

Joint ci ratio: 9.239497e-01	ci left: 3.601141e-06	ci right 9.897671e-06	k: 17	n:2750000
Cons ci ratio: 1.600331e+00	ci left: 5.903589e-07	ci right 4.243025e-06	k: 5	n:2750000
KS ci ratio: 8.443428e-03	ci left: 7.237561e-02	ci right 7.298965e-02	k: 199876	n:2750000
SEC14L1   2750000 perm   3513 sec   (783 perm/sec)   p_kst 7.268218e-02   p_cons 1.818182e-06   p_joint 6.181818e-06

Joint ci ratio: 9.239497e-01	ci left: 3.588093e-06	ci right 9.861810e-06	k: 17	n:2760000
Cons ci ratio: 1.600331e+00	ci left: 5.882200e-07	ci right 4.227651e-06	k: 5	n:2760000
KS ci ratio: 8.428590e-03	ci left: 7.236864e-02	ci right 7.298153e-02	k: 200582	n:2760000
SEC14L1   2760000 perm   3536 sec   (780 perm/sec)   p_kst 7.267464e-02   p_cons 1.811594e-06   p_joint 6.159420e-06

Joint ci ratio: 9.239497e-01	ci left: 3.575140e-06	ci right 9.826208e-06	k: 17	n:2770000
Cons ci ratio: 1.600331e+00	ci left: 5.860964e-07	ci right 4.212389e-06	k: 5	n:2770000
KS ci ratio: 8.414235e-03	ci left: 7.235523e-02	ci right 7.296696e-02	k: 201270	n:2770000
SEC14L1   2770000 perm   3560 sec   (778 perm/sec)   p_kst 7.266065e-02   p_cons 1.805054e-06   p_joint 6.137184e-06

Joint ci ratio: 9.239497e-01	ci left: 3.562280e-06	ci right 9.790862e-06	k: 17	n:2780000
Cons ci ratio: 1.600331e+00	ci left: 5.839882e-07	ci right 4.197237e-06	k: 5	n:2780000
KS ci ratio: 8.398631e-03	ci left: 7.236310e-02	ci right 7.297376e-02	k: 202017	n:2780000
SEC14L1   2780000 perm   3583 sec   (776 perm/sec)   p_kst 7.266799e-02   p_cons 1.798561e-06   p_joint 6.115108e-06

Joint ci ratio: 9.239497e-01	ci left: 3.549512e-06	ci right 9.755770e-06	k: 17	n:2790000
Cons ci ratio: 1.600331e+00	ci left: 5.818950e-07	ci right 4.182193e-06	k: 5	n:2790000
KS ci ratio: 8.383448e-03	ci left: 7.236555e-02	ci right 7.297512e-02	k: 202749	n:2790000
SEC14L1   2790000 perm   3608 sec   (773 perm/sec)   p_kst 7.266989e-02   p_cons 1.792115e-06   p_joint 6.093190e-06

Joint ci ratio: 9.239497e-01	ci left: 3.536835e-06	ci right 9.720928e-06	k: 17	n:2800000
Cons ci ratio: 1.600331e+00	ci left: 5.798168e-07	ci right 4.167256e-06	k: 5	n:2800000
KS ci ratio: 8.367149e-03	ci left: 7.238723e-02	ci right 7.299580e-02	k: 203535	n:2800000
SEC14L1   2800000 perm   3632 sec   (771 perm/sec)   p_kst 7.269107e-02   p_cons 1.785714e-06   p_joint 6.071429e-06

Joint ci ratio: 9.239497e-01	ci left: 3.524248e-06	ci right 9.686334e-06	k: 17	n:2810000
Cons ci ratio: 1.600331e+00	ci left: 5.777534e-07	ci right 4.152426e-06	k: 5	n:2810000
KS ci ratio: 8.351629e-03	ci left: 7.239775e-02	ci right 7.300527e-02	k: 204290	n:2810000
SEC14L1   2810000 perm   3655 sec   (769 perm/sec)   p_kst 7.270107e-02   p_cons 1.779359e-06   p_joint 6.049822e-06

Joint ci ratio: 9.239497e-01	ci left: 3.511751e-06	ci right 9.651985e-06	k: 17	n:2820000
Cons ci ratio: 1.600331e+00	ci left: 5.757046e-07	ci right 4.137702e-06	k: 5	n:2820000
KS ci ratio: 8.337378e-03	ci left: 7.238908e-02	ci right 7.299549e-02	k: 204991	n:2820000
SEC14L1   2820000 perm   3679 sec   (767 perm/sec)   p_kst 7.269184e-02   p_cons 1.773050e-06   p_joint 6.028369e-06

Joint ci ratio: 9.239498e-01	ci left: 3.499342e-06	ci right 9.617879e-06	k: 17	n:2830000
Cons ci ratio: 1.600331e+00	ci left: 5.736703e-07	ci right 4.123081e-06	k: 5	n:2830000
KS ci ratio: 8.322197e-03	ci left: 7.239670e-02	ci right 7.300206e-02	k: 205738	n:2830000
SEC14L1   2830000 perm   3703 sec   (764 perm/sec)   p_kst 7.269894e-02   p_cons 1.766784e-06   p_joint 6.007067e-06

Joint ci ratio: 9.239498e-01	ci left: 3.487020e-06	ci right 9.584013e-06	k: 17	n:2840000
Cons ci ratio: 1.600331e+00	ci left: 5.716504e-07	ci right 4.108563e-06	k: 5	n:2840000
KS ci ratio: 8.307163e-03	ci left: 7.240321e-02	ci right 7.300752e-02	k: 206482	n:2840000
SEC14L1   2840000 perm   3727 sec   (762 perm/sec)   p_kst 7.270493e-02   p_cons 1.760563e-06   p_joint 5.985915e-06

Joint ci ratio: 9.239498e-01	ci left: 3.474785e-06	ci right 9.550385e-06	k: 17	n:2850000
Cons ci ratio: 1.600331e+00	ci left: 5.696446e-07	ci right 4.094147e-06	k: 5	n:2850000
KS ci ratio: 8.291413e-03	ci left: 7.242263e-02	ci right 7.302596e-02	k: 207263	n:2850000
SEC14L1   2850000 perm   3752 sec   (760 perm/sec)   p_kst 7.272386e-02   p_cons 1.754386e-06   p_joint 5.964912e-06

Joint ci ratio: 9.239498e-01	ci left: 3.462635e-06	ci right 9.516992e-06	k: 17	n:2860000
Cons ci ratio: 1.600331e+00	ci left: 5.676528e-07	ci right 4.079832e-06	k: 5	n:2860000
KS ci ratio: 8.276652e-03	ci left: 7.242726e-02	ci right 7.302955e-02	k: 208002	n:2860000
SEC14L1   2860000 perm   3776 sec   (757 perm/sec)   p_kst 7.272797e-02   p_cons 1.748252e-06   p_joint 5.944056e-06

Joint ci ratio: 9.239498e-01	ci left: 3.450570e-06	ci right 9.483832e-06	k: 17	n:2870000
Cons ci ratio: 1.600331e+00	ci left: 5.656749e-07	ci right 4.065616e-06	k: 5	n:2870000
KS ci ratio: 8.261992e-03	ci left: 7.243151e-02	ci right 7.303276e-02	k: 208740	n:2870000
SEC14L1   2870000 perm   3800 sec   (755 perm/sec)   p_kst 7.273171e-02   p_cons 1.742160e-06   p_joint 5.923345e-06

Joint ci ratio: 9.799971e-01	ci left: 2.915067e-06	ci right 8.590339e-06	k: 15	n:2880000
Cons ci ratio: 1.600331e+00	ci left: 5.637108e-07	ci right 4.051500e-06	k: 5	n:2880000
KS ci ratio: 8.247578e-03	ci left: 7.243297e-02	ci right 7.303317e-02	k: 209470	n:2880000
SEC14L1   2880000 perm   3825 sec   (753 perm/sec)   p_kst 7.273264e-02   p_cons 1.736111e-06   p_joint 5.208333e-06

Joint ci ratio: 9.799971e-01	ci left: 2.904981e-06	ci right 8.560615e-06	k: 15	n:2890000
Cons ci ratio: 1.600331e+00	ci left: 5.617602e-07	ci right 4.037480e-06	k: 5	n:2890000
KS ci ratio: 8.233578e-03	ci left: 7.242888e-02	ci right 7.302803e-02	k: 210184	n:2890000
SEC14L1   2890000 perm   3850 sec   (751 perm/sec)   p_kst 7.272803e-02   p_cons 1.730104e-06   p_joint 5.190311e-06

Joint ci ratio: 9.799971e-01	ci left: 2.894964e-06	ci right 8.531096e-06	k: 15	n:2900000
Cons ci ratio: 1.600331e+00	ci left: 5.598231e-07	ci right 4.023558e-06	k: 5	n:2900000
KS ci ratio: 8.218473e-03	ci left: 7.244410e-02	ci right 7.304227e-02	k: 210954	n:2900000
SEC14L1   2900000 perm   3875 sec   (748 perm/sec)   p_kst 7.274276e-02   p_cons 1.724138e-06   p_joint 5.172414e-06

Joint ci ratio: 9.799971e-01	ci left: 2.885015e-06	ci right 8.501779e-06	k: 15	n:2910000
Cons ci ratio: 1.600331e+00	ci left: 5.578993e-07	ci right 4.009732e-06	k: 5	n:2910000
KS ci ratio: 8.203617e-03	ci left: 7.245647e-02	ci right 7.305366e-02	k: 211716	n:2910000
SEC14L1   2910000 perm   3899 sec   (746 perm/sec)   p_kst 7.275464e-02   p_cons 1.718213e-06   p_joint 5.154639e-06

Joint ci ratio: 9.799971e-01	ci left: 2.875135e-06	ci right 8.472664e-06	k: 15	n:2920000
Cons ci ratio: 1.600331e+00	ci left: 5.559887e-07	ci right 3.996000e-06	k: 5	n:2920000
KS ci ratio: 8.190151e-03	ci left: 7.244722e-02	ci right 7.304335e-02	k: 212415	n:2920000
SEC14L1   2920000 perm   3924 sec   (744 perm/sec)   p_kst 7.274486e-02   p_cons 1.712329e-06   p_joint 5.136986e-06

Joint ci ratio: 9.799972e-01	ci left: 2.865322e-06	ci right 8.443747e-06	k: 15	n:2930000
Cons ci ratio: 1.600331e+00	ci left: 5.540911e-07	ci right 3.982361e-06	k: 5	n:2930000
KS ci ratio: 8.175904e-03	ci left: 7.245201e-02	ci right 7.304713e-02	k: 213155	n:2930000
SEC14L1   2930000 perm   3948 sec   (742 perm/sec)   p_kst 7.274915e-02   p_cons 1.706485e-06   p_joint 5.119454e-06

Joint ci ratio: 9.799972e-01	ci left: 2.855576e-06	ci right 8.415026e-06	k: 15	n:2940000
Cons ci ratio: 1.600331e+00	ci left: 5.522065e-07	ci right 3.968816e-06	k: 5	n:2940000
KS ci ratio: 8.162039e-03	ci left: 7.245167e-02	ci right 7.304577e-02	k: 213880	n:2940000
SEC14L1   2940000 perm   3973 sec   (740 perm/sec)   p_kst 7.274830e-02   p_cons 1.700680e-06   p_joint 5.102041e-06

Joint ci ratio: 9.799972e-01	ci left: 2.845896e-06	ci right 8.386501e-06	k: 15	n:2950000
Cons ci ratio: 1.600331e+00	ci left: 5.503346e-07	ci right 3.955362e-06	k: 5	n:2950000
KS ci ratio: 8.147425e-03	ci left: 7.246486e-02	ci right 7.305801e-02	k: 214645	n:2950000
SEC14L1   2950000 perm   3999 sec   (738 perm/sec)   p_kst 7.276102e-02   p_cons 1.694915e-06   p_joint 5.084746e-06

Joint ci ratio: 9.799972e-01	ci left: 2.836282e-06	ci right 8.358168e-06	k: 15	n:2960000
Cons ci ratio: 1.600331e+00	ci left: 5.484754e-07	ci right 3.942000e-06	k: 5	n:2960000
KS ci ratio: 8.134009e-03	ci left: 7.245943e-02	ci right 7.305155e-02	k: 215355	n:2960000
SEC14L1   2960000 perm   4024 sec   (736 perm/sec)   p_kst 7.275507e-02   p_cons 1.689189e-06   p_joint 5.067568e-06

Joint ci ratio: 9.799972e-01	ci left: 2.826732e-06	ci right 8.330026e-06	k: 15	n:2970000
Cons ci ratio: 1.600331e+00	ci left: 5.466286e-07	ci right 3.928727e-06	k: 5	n:2970000
KS ci ratio: 8.120721e-03	ci left: 7.245302e-02	ci right 7.304411e-02	k: 216062	n:2970000
SEC14L1   2970000 perm   4050 sec   (733 perm/sec)   p_kst 7.274815e-02   p_cons 1.683502e-06   p_joint 5.050505e-06

Joint ci ratio: 9.799972e-01	ci left: 2.817246e-06	ci right 8.302073e-06	k: 15	n:2980000
Cons ci ratio: 1.600331e+00	ci left: 5.447943e-07	ci right 3.915543e-06	k: 5	n:2980000
KS ci ratio: 8.107174e-03	ci left: 7.245201e-02	ci right 7.304211e-02	k: 216785	n:2980000
SEC14L1   2980000 perm   4075 sec   (731 perm/sec)   p_kst 7.274664e-02   p_cons 1.677852e-06   p_joint 5.033557e-06

Joint ci ratio: 9.799972e-01	ci left: 2.807824e-06	ci right 8.274307e-06	k: 15	n:2990000
Cons ci ratio: 1.600331e+00	ci left: 5.429723e-07	ci right 3.902448e-06	k: 5	n:2990000
KS ci ratio: 8.093314e-03	ci left: 7.245736e-02	ci right 7.304648e-02	k: 217527	n:2990000
SEC14L1   2990000 perm   4100 sec   (729 perm/sec)   p_kst 7.275151e-02   p_cons 1.672241e-06   p_joint 5.016722e-06

Joint ci ratio: 9.507368e-01	ci left: 3.048464e-06	ci right 8.660985e-06	k: 16	n:3000000
Cons ci ratio: 1.600331e+00	ci left: 5.411623e-07	ci right 3.889440e-06	k: 5	n:3000000
KS ci ratio: 8.079845e-03	ci left: 7.245734e-02	ci right 7.304548e-02	k: 218253	n:3000000
SEC14L1   3000000 perm   4125 sec   (727 perm/sec)   p_kst 7.275100e-02   p_cons 1.666667e-06   p_joint 5.333333e-06

Joint ci ratio: 9.507368e-01	ci left: 3.038336e-06	ci right 8.632211e-06	k: 16	n:3010000
Cons ci ratio: 1.600331e+00	ci left: 5.393645e-07	ci right 3.876518e-06	k: 5	n:3010000
KS ci ratio: 8.066184e-03	ci left: 7.246164e-02	ci right 7.304882e-02	k: 218992	n:3010000
SEC14L1   3010000 perm   4150 sec   (725 perm/sec)   p_kst 7.275482e-02   p_cons 1.661130e-06   p_joint 5.315615e-06

Joint ci ratio: 9.507368e-01	ci left: 3.028275e-06	ci right 8.603627e-06	k: 16	n:3020000
Cons ci ratio: 1.600331e+00	ci left: 5.375785e-07	ci right 3.863682e-06	k: 5	n:3020000
KS ci ratio: 8.053521e-03	ci left: 7.245038e-02	ci right 7.303654e-02	k: 219684	n:3020000
SEC14L1   3020000 perm   4175 sec   (723 perm/sec)   p_kst 7.274305e-02   p_cons 1.655629e-06   p_joint 5.298013e-06

Joint ci ratio: 9.507368e-01	ci left: 3.018281e-06	ci right 8.575233e-06	k: 16	n:3030000
Cons ci ratio: 1.600331e+00	ci left: 5.358043e-07	ci right 3.850930e-06	k: 5	n:3030000
KS ci ratio: 8.041645e-03	ci left: 7.242700e-02	ci right 7.301210e-02	k: 220339	n:3030000
SEC14L1   3030000 perm   4201 sec   (721 perm/sec)   p_kst 7.271914e-02   p_cons 1.650165e-06   p_joint 5.280528e-06

Joint ci ratio: 9.507368e-01	ci left: 3.008352e-06	ci right 8.547025e-06	k: 16	n:3040000
Cons ci ratio: 1.600331e+00	ci left: 5.340418e-07	ci right 3.838263e-06	k: 5	n:3040000
KS ci ratio: 8.029744e-03	ci left: 7.240509e-02	ci right 7.298915e-02	k: 220998	n:3040000
SEC14L1   3040000 perm   4227 sec   (719 perm/sec)   p_kst 7.269671e-02   p_cons 1.644737e-06   p_joint 5.263158e-06

Joint ci ratio: 9.507368e-01	ci left: 2.998489e-06	ci right 8.519002e-06	k: 16	n:3050000
Cons ci ratio: 1.600331e+00	ci left: 5.322908e-07	ci right 3.825678e-06	k: 5	n:3050000
KS ci ratio: 8.016842e-03	ci left: 7.240100e-02	ci right 7.298408e-02	k: 221711	n:3050000
SEC14L1   3050000 perm   4252 sec   (717 perm/sec)   p_kst 7.269213e-02   p_cons 1.639344e-06   p_joint 5.245902e-06

Joint ci ratio: 9.507369e-01	ci left: 2.988690e-06	ci right 8.491162e-06	k: 16	n:3060000
Cons ci ratio: 1.600331e+00	ci left: 5.305513e-07	ci right 3.813176e-06	k: 5	n:3060000
KS ci ratio: 8.003749e-03	ci left: 7.240117e-02	ci right 7.298330e-02	k: 222437	n:3060000
SEC14L1   3060000 perm   4277 sec   (715 perm/sec)   p_kst 7.269183e-02   p_cons 1.633987e-06   p_joint 5.228758e-06

Joint ci ratio: 1.012137e+00	ci left: 2.493139e-06	ci right 7.651331e-06	k: 14	n:3070000
Cons ci ratio: 1.600331e+00	ci left: 5.288231e-07	ci right 3.800756e-06	k: 5	n:3070000
KS ci ratio: 7.990644e-03	ci left: 7.240265e-02	ci right 7.298383e-02	k: 223167	n:3070000
SEC14L1   3070000 perm   4303 sec   (713 perm/sec)   p_kst 7.269283e-02   p_cons 1.628664e-06   p_joint 4.560261e-06

Joint ci ratio: 1.012137e+00	ci left: 2.485044e-06	ci right 7.626489e-06	k: 14	n:3080000
Cons ci ratio: 1.600331e+00	ci left: 5.271062e-07	ci right 3.788415e-06	k: 5	n:3080000
KS ci ratio: 7.977564e-03	ci left: 7.240476e-02	ci right 7.298500e-02	k: 223899	n:3080000
SEC14L1   3080000 perm   4329 sec   (711 perm/sec)   p_kst 7.269448e-02   p_cons 1.623377e-06   p_joint 4.545455e-06

Joint ci ratio: 1.012137e+00	ci left: 2.477002e-06	ci right 7.601807e-06	k: 14	n:3090000
Cons ci ratio: 1.600331e+00	ci left: 5.254003e-07	ci right 3.776155e-06	k: 5	n:3090000
KS ci ratio: 7.965275e-03	ci left: 7.239459e-02	ci right 7.297385e-02	k: 224593	n:3090000
SEC14L1   3090000 perm   4355 sec   (709 perm/sec)   p_kst 7.268382e-02   p_cons 1.618123e-06   p_joint 4.530744e-06

Joint ci ratio: 1.012137e+00	ci left: 2.469012e-06	ci right 7.577286e-06	k: 14	n:3100000
Cons ci ratio: 1.600331e+00	ci left: 5.237055e-07	ci right 3.763974e-06	k: 5	n:3100000
KS ci ratio: 7.951996e-03	ci left: 7.240219e-02	ci right 7.298054e-02	k: 225342	n:3100000
SEC14L1   3100000 perm   4382 sec   (708 perm/sec)   p_kst 7.269097e-02   p_cons 1.612903e-06   p_joint 4.516129e-06

Joint ci ratio: 1.012137e+00	ci left: 2.461073e-06	ci right 7.552921e-06	k: 14	n:3110000
Cons ci ratio: 1.600331e+00	ci left: 5.220215e-07	ci right 3.751871e-06	k: 5	n:3110000
KS ci ratio: 7.939351e-03	ci left: 7.240012e-02	ci right 7.297753e-02	k: 226061	n:3110000
SEC14L1   3110000 perm   4407 sec   (706 perm/sec)   p_kst 7.268842e-02   p_cons 1.607717e-06   p_joint 4.501608e-06

Joint ci ratio: 1.012137e+00	ci left: 2.453185e-06	ci right 7.528713e-06	k: 14	n:3120000
Cons ci ratio: 1.600332e+00	ci left: 5.203484e-07	ci right 3.739846e-06	k: 5	n:3120000
KS ci ratio: 7.927067e-03	ci left: 7.239294e-02	ci right 7.296939e-02	k: 226764	n:3120000
SEC14L1   3120000 perm   4433 sec   (704 perm/sec)   p_kst 7.268077e-02   p_cons 1.602564e-06   p_joint 4.487179e-06

Joint ci ratio: 1.012137e+00	ci left: 2.445347e-06	ci right 7.504660e-06	k: 14	n:3130000
Cons ci ratio: 1.600332e+00	ci left: 5.186859e-07	ci right 3.727898e-06	k: 5	n:3130000
KS ci ratio: 7.914428e-03	ci left: 7.239282e-02	ci right 7.296835e-02	k: 227489	n:3130000
SEC14L1   3130000 perm   4459 sec   (702 perm/sec)   p_kst 7.268019e-02   p_cons 1.597444e-06   p_joint 4.472843e-06

Joint ci ratio: 1.012137e+00	ci left: 2.437559e-06	ci right 7.480760e-06	k: 14	n:3140000
Cons ci ratio: 1.600332e+00	ci left: 5.170341e-07	ci right 3.716025e-06	k: 5	n:3140000
KS ci ratio: 7.901700e-03	ci left: 7.239525e-02	ci right 7.296987e-02	k: 228222	n:3140000
SEC14L1   3140000 perm   4485 sec   (700 perm/sec)   p_kst 7.268217e-02   p_cons 1.592357e-06   p_joint 4.458599e-06

Joint ci ratio: 1.012137e+00	ci left: 2.429821e-06	ci right 7.457011e-06	k: 14	n:3150000
Cons ci ratio: 1.600332e+00	ci left: 5.153927e-07	ci right 3.704228e-06	k: 5	n:3150000
KS ci ratio: 7.888866e-03	ci left: 7.240051e-02	ci right 7.297424e-02	k: 228964	n:3150000
SEC14L1   3150000 perm   4511 sec   (698 perm/sec)   p_kst 7.268698e-02   p_cons 1.587302e-06   p_joint 4.444444e-06

Joint ci ratio: 1.012137e+00	ci left: 2.422132e-06	ci right 7.433413e-06	k: 14	n:3160000
Cons ci ratio: 1.600332e+00	ci left: 5.137617e-07	ci right 3.692506e-06	k: 5	n:3160000
KS ci ratio: 7.876482e-03	ci left: 7.239911e-02	ci right 7.297192e-02	k: 229685	n:3160000
SEC14L1   3160000 perm   4537 sec   (697 perm/sec)   p_kst 7.268513e-02   p_cons 1.582278e-06   p_joint 4.430380e-06

Joint ci ratio: 1.012137e+00	ci left: 2.414491e-06	ci right 7.409964e-06	k: 14	n:3170000
Cons ci ratio: 1.600332e+00	ci left: 5.121410e-07	ci right 3.680858e-06	k: 5	n:3170000
KS ci ratio: 7.863733e-03	ci left: 7.240496e-02	ci right 7.297689e-02	k: 230429	n:3170000
SEC14L1   3170000 perm   4564 sec   (695 perm/sec)   p_kst 7.269054e-02   p_cons 1.577287e-06   p_joint 4.416404e-06

Joint ci ratio: 1.012137e+00	ci left: 2.406898e-06	ci right 7.386662e-06	k: 14	n:3180000
Cons ci ratio: 1.600332e+00	ci left: 5.105305e-07	ci right 3.669283e-06	k: 5	n:3180000
KS ci ratio: 7.850442e-03	ci left: 7.242114e-02	ci right 7.299222e-02	k: 231206	n:3180000
SEC14L1   3180000 perm   4591 sec   (693 perm/sec)   p_kst 7.270629e-02   p_cons 1.572327e-06   p_joint 4.402516e-06

Joint ci ratio: 1.012137e+00	ci left: 2.399353e-06	ci right 7.363507e-06	k: 14	n:3190000
Cons ci ratio: 1.600332e+00	ci left: 5.089301e-07	ci right 3.657781e-06	k: 5	n:3190000
KS ci ratio: 7.837218e-03	ci left: 7.243721e-02	ci right 7.300745e-02	k: 231983	n:3190000
SEC14L1   3190000 perm   4618 sec   (691 perm/sec)   p_kst 7.272194e-02   p_cons 1.567398e-06   p_joint 4.388715e-06

Joint ci ratio: 1.012137e+00	ci left: 2.391855e-06	ci right 7.340496e-06	k: 14	n:3200000
Cons ci ratio: 1.600332e+00	ci left: 5.073397e-07	ci right 3.646350e-06	k: 5	n:3200000
KS ci ratio: 7.824894e-03	ci left: 7.243883e-02	ci right 7.300819e-02	k: 232714	n:3200000
SEC14L1   3200000 perm   4645 sec   (689 perm/sec)   p_kst 7.272312e-02   p_cons 1.562500e-06   p_joint 4.375000e-06

Joint ci ratio: 1.012137e+00	ci left: 2.384404e-06	ci right 7.317628e-06	k: 14	n:3210000
Cons ci ratio: 1.600332e+00	ci left: 5.057592e-07	ci right 3.634991e-06	k: 5	n:3210000
KS ci ratio: 7.813801e-03	ci left: 7.242024e-02	ci right 7.298863e-02	k: 233380	n:3210000
SEC14L1   3210000 perm   4672 sec   (687 perm/sec)   p_kst 7.270405e-02   p_cons 1.557632e-06   p_joint 4.361371e-06

Joint ci ratio: 1.012137e+00	ci left: 2.376999e-06	ci right 7.294903e-06	k: 14	n:3220000
Cons ci ratio: 1.600332e+00	ci left: 5.041885e-07	ci right 3.623702e-06	k: 5	n:3220000
KS ci ratio: 7.801462e-03	ci left: 7.242407e-02	ci right 7.299160e-02	k: 234118	n:3220000
SEC14L1   3220000 perm   4699 sec   (685 perm/sec)   p_kst 7.270745e-02   p_cons 1.552795e-06   p_joint 4.347826e-06

Joint ci ratio: 1.012137e+00	ci left: 2.369640e-06	ci right 7.272318e-06	k: 14	n:3230000
Cons ci ratio: 1.600332e+00	ci left: 5.026276e-07	ci right 3.612483e-06	k: 5	n:3230000
KS ci ratio: 7.789306e-03	ci left: 7.242573e-02	ci right 7.299238e-02	k: 234849	n:3230000
SEC14L1   3230000 perm   4726 sec   (683 perm/sec)   p_kst 7.270867e-02   p_cons 1.547988e-06   p_joint 4.334365e-06

Joint ci ratio: 1.012137e+00	ci left: 2.362326e-06	ci right 7.249872e-06	k: 14	n:3240000
Cons ci ratio: 1.600332e+00	ci left: 5.010762e-07	ci right 3.601333e-06	k: 5	n:3240000
KS ci ratio: 7.776761e-03	ci left: 7.243507e-02	ci right 7.300088e-02	k: 235605	n:3240000
SEC14L1   3240000 perm   4754 sec   (682 perm/sec)   p_kst 7.271759e-02   p_cons 1.543210e-06   p_joint 4.320988e-06

Joint ci ratio: 1.012137e+00	ci left: 2.355057e-06	ci right 7.227565e-06	k: 14	n:3250000
Cons ci ratio: 1.600332e+00	ci left: 4.995345e-07	ci right 3.590252e-06	k: 5	n:3250000
KS ci ratio: 7.765128e-03	ci left: 7.242962e-02	ci right 7.299453e-02	k: 236313	n:3250000
SEC14L1   3250000 perm   4783 sec   (680 perm/sec)   p_kst 7.271169e-02   p_cons 1.538462e-06   p_joint 4.307692e-06

Joint ci ratio: 1.012137e+00	ci left: 2.347833e-06	ci right 7.205395e-06	k: 14	n:3260000
Cons ci ratio: 1.600332e+00	ci left: 4.980021e-07	ci right 3.579239e-06	k: 5	n:3260000
KS ci ratio: 7.752999e-03	ci left: 7.243369e-02	ci right 7.299775e-02	k: 237052	n:3260000
SEC14L1   3260000 perm   4811 sec   (678 perm/sec)   p_kst 7.271534e-02   p_cons 1.533742e-06   p_joint 4.294479e-06

Joint ci ratio: 1.012137e+00	ci left: 2.340653e-06	ci right 7.183360e-06	k: 14	n:3270000
Cons ci ratio: 1.600332e+00	ci left: 4.964792e-07	ci right 3.568294e-06	k: 5	n:3270000
KS ci ratio: 7.741191e-03	ci left: 7.243316e-02	ci right 7.299635e-02	k: 237776	n:3270000
SEC14L1   3270000 perm   4838 sec   (676 perm/sec)   p_kst 7.271437e-02   p_cons 1.529052e-06   p_joint 4.281346e-06

Joint ci ratio: 1.012137e+00	ci left: 2.333517e-06	ci right 7.161459e-06	k: 14	n:3280000
Cons ci ratio: 1.600332e+00	ci left: 4.949655e-07	ci right 3.557415e-06	k: 5	n:3280000
KS ci ratio: 7.729209e-03	ci left: 7.243658e-02	ci right 7.299893e-02	k: 238513	n:3280000
SEC14L1   3280000 perm   4866 sec   (674 perm/sec)   p_kst 7.271738e-02   p_cons 1.524390e-06   p_joint 4.268293e-06

Joint ci ratio: 1.012137e+00	ci left: 2.326424e-06	ci right 7.139692e-06	k: 14	n:3290000
Cons ci ratio: 1.600332e+00	ci left: 4.934611e-07	ci right 3.546602e-06	k: 5	n:3290000
KS ci ratio: 7.717735e-03	ci left: 7.243210e-02	ci right 7.299357e-02	k: 239224	n:3290000
SEC14L1   3290000 perm   4894 sec   (672 perm/sec)   p_kst 7.271246e-02   p_cons 1.519757e-06   p_joint 4.255319e-06

Joint ci ratio: 1.012137e+00	ci left: 2.319375e-06	ci right 7.118057e-06	k: 14	n:3300000
Cons ci ratio: 1.600332e+00	ci left: 4.919658e-07	ci right 3.535855e-06	k: 5	n:3300000
KS ci ratio: 7.705360e-03	ci left: 7.244429e-02	ci right 7.300495e-02	k: 239990	n:3300000
SEC14L1   3300000 perm   4922 sec   (670 perm/sec)   p_kst 7.272424e-02   p_cons 1.515152e-06   p_joint 4.242424e-06

Joint ci ratio: 1.012137e+00	ci left: 2.312368e-06	ci right 7.096552e-06	k: 14	n:3310000
Cons ci ratio: 1.600332e+00	ci left: 4.904794e-07	ci right 3.525172e-06	k: 5	n:3310000
KS ci ratio: 7.693492e-03	ci left: 7.244856e-02	ci right 7.300838e-02	k: 240730	n:3310000
SEC14L1   3310000 perm   4950 sec   (669 perm/sec)   p_kst 7.272810e-02   p_cons 1.510574e-06   p_joint 4.229607e-06

Joint ci ratio: 1.012137e+00	ci left: 2.305403e-06	ci right 7.075177e-06	k: 14	n:3320000
Cons ci ratio: 1.600332e+00	ci left: 4.890021e-07	ci right 3.514554e-06	k: 5	n:3320000
KS ci ratio: 7.681764e-03	ci left: 7.245130e-02	ci right 7.301029e-02	k: 241465	n:3320000
SEC14L1   3320000 perm   4978 sec   (667 perm/sec)   p_kst 7.273042e-02   p_cons 1.506024e-06   p_joint 4.216867e-06

Joint ci ratio: 1.012137e+00	ci left: 2.298479e-06	ci right 7.053930e-06	k: 14	n:3330000
Cons ci ratio: 1.600332e+00	ci left: 4.875336e-07	ci right 3.504000e-06	k: 5	n:3330000
KS ci ratio: 7.669321e-03	ci left: 7.246751e-02	ci right 7.302572e-02	k: 242245	n:3330000
SEC14L1   3330000 perm   5007 sec   (665 perm/sec)   p_kst 7.274625e-02   p_cons 1.501502e-06   p_joint 4.204204e-06

Joint ci ratio: 1.012137e+00	ci left: 2.291598e-06	ci right 7.032811e-06	k: 14	n:3340000
Cons ci ratio: 1.600332e+00	ci left: 4.860739e-07	ci right 3.493509e-06	k: 5	n:3340000
KS ci ratio: 7.658333e-03	ci left: 7.245913e-02	ci right 7.301646e-02	k: 242943	n:3340000
SEC14L1   3340000 perm   5036 sec   (663 perm/sec)   p_kst 7.273743e-02   p_cons 1.497006e-06   p_joint 4.191617e-06

Joint ci ratio: 1.012137e+00	ci left: 2.284757e-06	ci right 7.011817e-06	k: 14	n:3350000
Cons ci ratio: 1.600332e+00	ci left: 4.846230e-07	ci right 3.483081e-06	k: 5	n:3350000
KS ci ratio: 7.647086e-03	ci left: 7.245615e-02	ci right 7.301265e-02	k: 243659	n:3350000
SEC14L1   3350000 perm   5064 sec   (661 perm/sec)   p_kst 7.273403e-02   p_cons 1.492537e-06   p_joint 4.179104e-06

Joint ci ratio: 1.012137e+00	ci left: 2.277957e-06	ci right 6.990949e-06	k: 14	n:3360000
Cons ci ratio: 1.600332e+00	ci left: 4.831806e-07	ci right 3.472714e-06	k: 5	n:3360000
KS ci ratio: 7.635485e-03	ci left: 7.246033e-02	ci right 7.301600e-02	k: 244399	n:3360000
SEC14L1   3360000 perm   5093 sec   (660 perm/sec)   p_kst 7.273780e-02   p_cons 1.488095e-06   p_joint 4.166667e-06

Joint ci ratio: 1.012137e+00	ci left: 2.271198e-06	ci right 6.970204e-06	k: 14	n:3370000
Cons ci ratio: 1.600332e+00	ci left: 4.817469e-07	ci right 3.462410e-06	k: 5	n:3370000
KS ci ratio: 7.624003e-03	ci left: 7.246329e-02	ci right 7.301815e-02	k: 245135	n:3370000
SEC14L1   3370000 perm   5122 sec   (658 perm/sec)   p_kst 7.274036e-02   p_cons 1.483680e-06   p_joint 4.154303e-06

Joint ci ratio: 1.012137e+00	ci left: 2.264478e-06	ci right 6.949582e-06	k: 14	n:3380000
Cons ci ratio: 1.600332e+00	ci left: 4.803216e-07	ci right 3.452166e-06	k: 5	n:3380000
KS ci ratio: 7.613542e-03	ci left: 7.244911e-02	ci right 7.300310e-02	k: 245813	n:3380000
SEC14L1   3380000 perm   5151 sec   (656 perm/sec)   p_kst 7.272574e-02   p_cons 1.479290e-06   p_joint 4.142012e-06

Joint ci ratio: 1.012137e+00	ci left: 2.257798e-06	ci right 6.929082e-06	k: 14	n:3390000
Cons ci ratio: 1.600332e+00	ci left: 4.789047e-07	ci right 3.441982e-06	k: 5	n:3390000
KS ci ratio: 7.602874e-03	ci left: 7.243943e-02	ci right 7.299257e-02	k: 246506	n:3390000
SEC14L1   3390000 perm   5180 sec   (654 perm/sec)   p_kst 7.271563e-02   p_cons 1.474926e-06   p_joint 4.129794e-06

Joint ci ratio: 1.012137e+00	ci left: 2.251158e-06	ci right 6.908702e-06	k: 14	n:3400000
Cons ci ratio: 1.600332e+00	ci left: 4.774962e-07	ci right 3.431859e-06	k: 5	n:3400000
KS ci ratio: 7.591290e-03	ci left: 7.244684e-02	ci right 7.299918e-02	k: 247257	n:3400000
SEC14L1   3400000 perm   5209 sec   (653 perm/sec)   p_kst 7.272265e-02   p_cons 1.470588e-06   p_joint 4.117647e-06

Joint ci ratio: 1.012137e+00	ci left: 2.244556e-06	ci right 6.888442e-06	k: 14	n:3410000
Cons ci ratio: 1.600332e+00	ci left: 4.760959e-07	ci right 3.421795e-06	k: 5	n:3410000
KS ci ratio: 7.580518e-03	ci left: 7.244074e-02	ci right 7.299225e-02	k: 247962	n:3410000
SEC14L1   3410000 perm   5238 sec   (651 perm/sec)   p_kst 7.271613e-02   p_cons 1.466276e-06   p_joint 4.105572e-06

Joint ci ratio: 1.012137e+00	ci left: 2.237993e-06	ci right 6.868301e-06	k: 14	n:3420000
Cons ci ratio: 1.600332e+00	ci left: 4.747038e-07	ci right 3.411790e-06	k: 5	n:3420000
KS ci ratio: 7.569036e-03	ci left: 7.244810e-02	ci right 7.299882e-02	k: 248713	n:3420000
SEC14L1   3420000 perm   5268 sec   (649 perm/sec)   p_kst 7.272310e-02   p_cons 1.461988e-06   p_joint 4.093567e-06

Joint ci ratio: 1.012137e+00	ci left: 2.231468e-06	ci right 6.848277e-06	k: 14	n:3430000
Cons ci ratio: 1.600332e+00	ci left: 4.733198e-07	ci right 3.401843e-06	k: 5	n:3430000
KS ci ratio: 7.557753e-03	ci left: 7.245280e-02	ci right 7.300274e-02	k: 249455	n:3430000
SEC14L1   3430000 perm   5298 sec   (647 perm/sec)   p_kst 7.272741e-02   p_cons 1.457726e-06   p_joint 4.081633e-06

Joint ci ratio: 1.012137e+00	ci left: 2.224981e-06	ci right 6.828369e-06	k: 14	n:3440000
Cons ci ratio: 1.600332e+00	ci left: 4.719439e-07	ci right 3.391954e-06	k: 5	n:3440000
KS ci ratio: 7.546488e-03	ci left: 7.245805e-02	ci right 7.300720e-02	k: 250199	n:3440000
SEC14L1   3440000 perm   5327 sec   (646 perm/sec)   p_kst 7.273227e-02   p_cons 1.453488e-06   p_joint 4.069767e-06

Joint ci ratio: 1.012137e+00	ci left: 2.218532e-06	ci right 6.808576e-06	k: 14	n:3450000
Cons ci ratio: 1.600332e+00	ci left: 4.705759e-07	ci right 3.382122e-06	k: 5	n:3450000
KS ci ratio: 7.534366e-03	ci left: 7.247948e-02	ci right 7.302791e-02	k: 250999	n:3450000
SEC14L1   3450000 perm   5356 sec   (644 perm/sec)   p_kst 7.275333e-02   p_cons 1.449275e-06   p_joint 4.057971e-06

Joint ci ratio: 1.012137e+00	ci left: 2.212120e-06	ci right 6.788899e-06	k: 14	n:3460000
Cons ci ratio: 1.600332e+00	ci left: 4.692159e-07	ci right 3.372347e-06	k: 5	n:3460000
KS ci ratio: 7.523044e-03	ci left: 7.248751e-02	ci right 7.303517e-02	k: 251753	n:3460000
SEC14L1   3460000 perm   5386 sec   (642 perm/sec)   p_kst 7.276098e-02   p_cons 1.445087e-06   p_joint 4.046243e-06

Joint ci ratio: 1.012137e+00	ci left: 2.205745e-06	ci right 6.769334e-06	k: 14	n:3470000
Cons ci ratio: 1.600332e+00	ci left: 4.678637e-07	ci right 3.362628e-06	k: 5	n:3470000
KS ci ratio: 7.512158e-03	ci left: 7.248859e-02	ci right 7.303547e-02	k: 252483	n:3470000
SEC14L1   3470000 perm   5415 sec   (641 perm/sec)   p_kst 7.276167e-02   p_cons 1.440922e-06   p_joint 4.034582e-06

Joint ci ratio: 1.012137e+00	ci left: 2.199407e-06	ci right 6.749882e-06	k: 14	n:3480000
Cons ci ratio: 1.600332e+00	ci left: 4.665192e-07	ci right 3.352966e-06	k: 5	n:3480000
KS ci ratio: 7.501830e-03	ci left: 7.248049e-02	ci right 7.302655e-02	k: 253181	n:3480000
SEC14L1   3480000 perm   5445 sec   (639 perm/sec)   p_kst 7.275316e-02   p_cons 1.436782e-06   p_joint 4.022989e-06

Joint ci ratio: 1.012137e+00	ci left: 2.193105e-06	ci right 6.730541e-06	k: 14	n:3490000
Cons ci ratio: 1.600332e+00	ci left: 4.651825e-07	ci right 3.343358e-06	k: 5	n:3490000
KS ci ratio: 7.491131e-03	ci left: 7.247987e-02	ci right 7.302514e-02	k: 253905	n:3490000
SEC14L1   3490000 perm   5475 sec   (637 perm/sec)   p_kst 7.275215e-02   p_cons 1.432665e-06   p_joint 4.011461e-06

Joint ci ratio: 1.012137e+00	ci left: 2.186839e-06	ci right 6.711311e-06	k: 14	n:3500000
Cons ci ratio: 1.600332e+00	ci left: 4.638534e-07	ci right 3.333806e-06	k: 5	n:3500000
KS ci ratio: 7.480557e-03	ci left: 7.247783e-02	ci right 7.302231e-02	k: 254624	n:3500000
SEC14L1   3500000 perm   5505 sec   (636 perm/sec)   p_kst 7.274971e-02   p_cons 1.428571e-06   p_joint 4.000000e-06

Joint ci ratio: 1.012137e+00	ci left: 2.180609e-06	ci right 6.692191e-06	k: 14	n:3510000
Cons ci ratio: 1.600332e+00	ci left: 4.625319e-07	ci right 3.324308e-06	k: 5	n:3510000
KS ci ratio: 7.469822e-03	ci left: 7.247949e-02	ci right 7.302321e-02	k: 255356	n:3510000
SEC14L1   3510000 perm   5535 sec   (634 perm/sec)   p_kst 7.275100e-02   p_cons 1.424501e-06   p_joint 3.988604e-06

Joint ci ratio: 1.012137e+00	ci left: 2.174414e-06	ci right 6.673179e-06	k: 14	n:3520000
Cons ci ratio: 1.600332e+00	ci left: 4.612179e-07	ci right 3.314864e-06	k: 5	n:3520000
KS ci ratio: 7.459259e-03	ci left: 7.247888e-02	ci right 7.302182e-02	k: 256080	n:3520000
SEC14L1   3520000 perm   5565 sec   (633 perm/sec)   p_kst 7.275000e-02   p_cons 1.420455e-06   p_joint 3.977273e-06

Joint ci ratio: 1.012137e+00	ci left: 2.168254e-06	ci right 6.654275e-06	k: 14	n:3530000
Cons ci ratio: 1.600332e+00	ci left: 4.599113e-07	ci right 3.305473e-06	k: 5	n:3530000
KS ci ratio: 7.449022e-03	ci left: 7.247319e-02	ci right 7.301533e-02	k: 256786	n:3530000
SEC14L1   3530000 perm   5594 sec   (631 perm/sec)   p_kst 7.274391e-02   p_cons 1.416431e-06   p_joint 3.966006e-06

Joint ci ratio: 1.012137e+00	ci left: 2.162129e-06	ci right 6.635477e-06	k: 14	n:3540000
Cons ci ratio: 1.600332e+00	ci left: 4.586121e-07	ci right 3.296136e-06	k: 5	n:3540000
KS ci ratio: 7.438594e-03	ci left: 7.247175e-02	ci right 7.301313e-02	k: 257507	n:3540000
SEC14L1   3540000 perm   5625 sec   (629 perm/sec)   p_kst 7.274209e-02   p_cons 1.412429e-06   p_joint 3.954802e-06

Joint ci ratio: 1.012137e+00	ci left: 2.156038e-06	ci right 6.616786e-06	k: 14	n:3550000
Cons ci ratio: 1.600332e+00	ci left: 4.573203e-07	ci right 3.286851e-06	k: 5	n:3550000
KS ci ratio: 7.428334e-03	ci left: 7.246808e-02	ci right 7.300867e-02	k: 258220	n:3550000
SEC14L1   3550000 perm   5655 sec   (628 perm/sec)   p_kst 7.273803e-02   p_cons 1.408451e-06   p_joint 3.943662e-06

Joint ci ratio: 1.012137e+00	ci left: 2.149982e-06	ci right 6.598199e-06	k: 14	n:3560000
Cons ci ratio: 1.600332e+00	ci left: 4.560357e-07	ci right 3.277618e-06	k: 5	n:3560000
KS ci ratio: 7.416648e-03	ci left: 7.249107e-02	ci right 7.303098e-02	k: 259028	n:3560000
SEC14L1   3560000 perm   5684 sec   (626 perm/sec)   p_kst 7.276067e-02   p_cons 1.404494e-06   p_joint 3.932584e-06

Joint ci ratio: 1.012137e+00	ci left: 2.143960e-06	ci right 6.579717e-06	k: 14	n:3570000
Cons ci ratio: 1.600332e+00	ci left: 4.547582e-07	ci right 3.268437e-06	k: 5	n:3570000
KS ci ratio: 7.405894e-03	ci left: 7.249798e-02	ci right 7.303716e-02	k: 259779	n:3570000
SEC14L1   3570000 perm   5715 sec   (625 perm/sec)   p_kst 7.276723e-02   p_cons 1.400560e-06   p_joint 3.921569e-06

Joint ci ratio: 1.012137e+00	ci left: 2.137971e-06	ci right 6.561338e-06	k: 14	n:3580000
Cons ci ratio: 1.600332e+00	ci left: 4.534880e-07	ci right 3.259308e-06	k: 5	n:3580000
KS ci ratio: 7.395324e-03	ci left: 7.250236e-02	ci right 7.304079e-02	k: 260521	n:3580000
SEC14L1   3580000 perm   5745 sec   (623 perm/sec)   p_kst 7.277123e-02   p_cons 1.396648e-06   p_joint 3.910615e-06

Joint ci ratio: 1.012137e+00	ci left: 2.132016e-06	ci right 6.543061e-06	k: 14	n:3590000
Cons ci ratio: 1.600332e+00	ci left: 4.522248e-07	ci right 3.250229e-06	k: 5	n:3590000
KS ci ratio: 7.384647e-03	ci left: 7.250948e-02	ci right 7.304719e-02	k: 261273	n:3590000
SEC14L1   3590000 perm   5775 sec   (622 perm/sec)   p_kst 7.277799e-02   p_cons 1.392758e-06   p_joint 3.899721e-06

Joint ci ratio: 1.012137e+00	ci left: 2.126093e-06	ci right 6.524886e-06	k: 14	n:3600000
Cons ci ratio: 1.600332e+00	ci left: 4.509686e-07	ci right 3.241200e-06	k: 5	n:3600000
KS ci ratio: 7.374061e-03	ci left: 7.251574e-02	ci right 7.305272e-02	k: 262022	n:3600000
SEC14L1   3600000 perm   5805 sec   (620 perm/sec)   p_kst 7.278389e-02   p_cons 1.388889e-06   p_joint 3.888889e-06

Joint ci ratio: 1.012137e+00	ci left: 2.120204e-06	ci right 6.506812e-06	k: 14	n:3610000
Cons ci ratio: 1.600332e+00	ci left: 4.497194e-07	ci right 3.232222e-06	k: 5	n:3610000
KS ci ratio: 7.364186e-03	ci left: 7.250980e-02	ci right 7.304601e-02	k: 262727	n:3610000
SEC14L1   3610000 perm   5835 sec   (619 perm/sec)   p_kst 7.277756e-02   p_cons 1.385042e-06   p_joint 3.878116e-06

Joint ci ratio: 1.012137e+00	ci left: 2.114347e-06	ci right 6.488837e-06	k: 14	n:3620000
Cons ci ratio: 1.600332e+00	ci left: 4.484771e-07	ci right 3.223293e-06	k: 5	n:3620000
KS ci ratio: 7.353778e-03	ci left: 7.251437e-02	ci right 7.304985e-02	k: 263470	n:3620000
SEC14L1   3620000 perm   5866 sec   (617 perm/sec)   p_kst 7.278177e-02   p_cons 1.381215e-06   p_joint 3.867403e-06

Joint ci ratio: 1.012137e+00	ci left: 2.108522e-06	ci right 6.470962e-06	k: 14	n:3630000
Cons ci ratio: 1.600332e+00	ci left: 4.472416e-07	ci right 3.214414e-06	k: 5	n:3630000
KS ci ratio: 7.343894e-03	ci left: 7.251011e-02	ci right 7.304484e-02	k: 264181	n:3630000
SEC14L1   3630000 perm   5898 sec   (616 perm/sec)   p_kst 7.277713e-02   p_cons 1.377410e-06   p_joint 3.856749e-06

Joint ci ratio: 1.012137e+00	ci left: 2.102730e-06	ci right 6.453184e-06	k: 14	n:3640000
Cons ci ratio: 1.600332e+00	ci left: 4.460129e-07	ci right 3.205583e-06	k: 5	n:3640000
KS ci ratio: 7.333438e-03	ci left: 7.251712e-02	ci right 7.305114e-02	k: 264933	n:3640000
SEC14L1   3640000 perm   5929 sec   (614 perm/sec)   p_kst 7.278379e-02   p_cons 1.373626e-06   p_joint 3.846154e-06

Joint ci ratio: 1.012137e+00	ci left: 2.096969e-06	ci right 6.435504e-06	k: 14	n:3650000
Cons ci ratio: 1.600332e+00	ci left: 4.447909e-07	ci right 3.196800e-06	k: 5	n:3650000
KS ci ratio: 7.323844e-03	ci left: 7.250905e-02	ci right 7.304231e-02	k: 265630	n:3650000
SEC14L1   3650000 perm   5960 sec   (612 perm/sec)   p_kst 7.277534e-02   p_cons 1.369863e-06   p_joint 3.835616e-06

Joint ci ratio: 1.012137e+00	ci left: 2.091239e-06	ci right 6.417921e-06	k: 14	n:3660000
Cons ci ratio: 1.600332e+00	ci left: 4.435757e-07	ci right 3.188066e-06	k: 5	n:3660000
KS ci ratio: 7.314198e-03	ci left: 7.250266e-02	ci right 7.303517e-02	k: 266333	n:3660000
SEC14L1   3660000 perm   5991 sec   (611 perm/sec)   p_kst 7.276858e-02   p_cons 1.366120e-06   p_joint 3.825137e-06

Joint ci ratio: 1.012137e+00	ci left: 2.085541e-06	ci right 6.400433e-06	k: 14	n:3670000
Cons ci ratio: 1.600332e+00	ci left: 4.423670e-07	ci right 3.179379e-06	k: 5	n:3670000
KS ci ratio: 7.304163e-03	ci left: 7.250420e-02	ci right 7.303598e-02	k: 267065	n:3670000
SEC14L1   3670000 perm   6022 sec   (609 perm/sec)   p_kst 7.276975e-02   p_cons 1.362398e-06   p_joint 3.814714e-06

Joint ci ratio: 1.012137e+00	ci left: 2.079874e-06	ci right 6.383041e-06	k: 14	n:3680000
Cons ci ratio: 1.600332e+00	ci left: 4.411649e-07	ci right 3.170740e-06	k: 5	n:3680000
KS ci ratio: 7.294066e-03	ci left: 7.250763e-02	ci right 7.303870e-02	k: 267804	n:3680000
SEC14L1   3680000 perm   6053 sec   (608 perm/sec)   p_kst 7.277283e-02   p_cons 1.358696e-06   p_joint 3.804348e-06

Joint ci ratio: 1.012137e+00	ci left: 2.074237e-06	ci right 6.365743e-06	k: 14	n:3690000
Cons ci ratio: 1.600332e+00	ci left: 4.399694e-07	ci right 3.162147e-06	k: 5	n:3690000
KS ci ratio: 7.284991e-03	ci left: 7.249291e-02	ci right 7.302321e-02	k: 268476	n:3690000
SEC14L1   3690000 perm   6084 sec   (607 perm/sec)   p_kst 7.275772e-02   p_cons 1.355014e-06   p_joint 3.794038e-06

Joint ci ratio: 1.012137e+00	ci left: 2.068631e-06	ci right 6.348538e-06	k: 14	n:3700000
Cons ci ratio: 1.600332e+00	ci left: 4.387802e-07	ci right 3.153600e-06	k: 5	n:3700000
KS ci ratio: 7.274871e-03	ci left: 7.249824e-02	ci right 7.302784e-02	k: 269222	n:3700000
SEC14L1   3700000 perm   6115 sec   (605 perm/sec)   p_kst 7.276270e-02   p_cons 1.351351e-06   p_joint 3.783784e-06

Joint ci ratio: 1.012137e+00	ci left: 2.063055e-06	ci right 6.331426e-06	k: 14	n:3710000
Cons ci ratio: 1.600332e+00	ci left: 4.375975e-07	ci right 3.145100e-06	k: 5	n:3710000
KS ci ratio: 7.265011e-03	ci left: 7.249950e-02	ci right 7.302839e-02	k: 269953	n:3710000
SEC14L1   3710000 perm   6146 sec   (604 perm/sec)   p_kst 7.276361e-02   p_cons 1.347709e-06   p_joint 3.773585e-06

Joint ci ratio: 1.012137e+00	ci left: 2.057510e-06	ci right 6.314406e-06	k: 14	n:3720000
Cons ci ratio: 1.600332e+00	ci left: 4.364212e-07	ci right 3.136646e-06	k: 5	n:3720000
KS ci ratio: 7.254310e-03	ci left: 7.251713e-02	ci right 7.304536e-02	k: 270745	n:3720000
SEC14L1   3720000 perm   6178 sec   (602 perm/sec)   p_kst 7.278091e-02   p_cons 1.344086e-06   p_joint 3.763441e-06

Joint ci ratio: 1.012137e+00	ci left: 2.051994e-06	ci right 6.297478e-06	k: 14	n:3730000
Cons ci ratio: 1.600332e+00	ci left: 4.352512e-07	ci right 3.128236e-06	k: 5	n:3730000
KS ci ratio: 7.244476e-03	ci left: 7.251941e-02	ci right 7.304694e-02	k: 271480	n:3730000
SEC14L1   3730000 perm   6209 sec   (601 perm/sec)   p_kst 7.278284e-02   p_cons 1.340483e-06   p_joint 3.753351e-06

Joint ci ratio: 1.012137e+00	ci left: 2.046507e-06	ci right 6.280639e-06	k: 14	n:3740000
Cons ci ratio: 1.600332e+00	ci left: 4.340874e-07	ci right 3.119872e-06	k: 5	n:3740000
KS ci ratio: 7.234911e-03	ci left: 7.251740e-02	ci right 7.304422e-02	k: 272199	n:3740000
SEC14L1   3740000 perm   6240 sec   (599 perm/sec)   p_kst 7.278048e-02   p_cons 1.336898e-06   p_joint 3.743316e-06

Joint ci ratio: 1.012137e+00	ci left: 2.041050e-06	ci right 6.263891e-06	k: 14	n:3750000
Cons ci ratio: 1.600332e+00	ci left: 4.329298e-07	ci right 3.111552e-06	k: 5	n:3750000
KS ci ratio: 7.225398e-03	ci left: 7.251514e-02	ci right 7.304125e-02	k: 272917	n:3750000
SEC14L1   3750000 perm   6272 sec   (598 perm/sec)   p_kst 7.277787e-02   p_cons 1.333333e-06   p_joint 3.733333e-06

Joint ci ratio: 1.012137e+00	ci left: 2.035621e-06	ci right 6.247232e-06	k: 14	n:3760000
Cons ci ratio: 1.600332e+00	ci left: 4.317784e-07	ci right 3.103277e-06	k: 5	n:3760000
KS ci ratio: 7.215723e-03	ci left: 7.251661e-02	ci right 7.304202e-02	k: 273649	n:3760000
SEC14L1   3760000 perm   6303 sec   (597 perm/sec)   p_kst 7.277899e-02   p_cons 1.329787e-06   p_joint 3.723404e-06

Joint ci ratio: 1.012138e+00	ci left: 2.030222e-06	ci right 6.230661e-06	k: 14	n:3770000
Cons ci ratio: 1.600332e+00	ci left: 4.306331e-07	ci right 3.095046e-06	k: 5	n:3770000
KS ci ratio: 7.206555e-03	ci left: 7.250934e-02	ci right 7.303402e-02	k: 274348	n:3770000
SEC14L1   3770000 perm   6334 sec   (595 perm/sec)   p_kst 7.277135e-02   p_cons 1.326260e-06   p_joint 3.713528e-06

Joint ci ratio: 1.012138e+00	ci left: 2.024851e-06	ci right 6.214178e-06	k: 14	n:3780000
Cons ci ratio: 1.600332e+00	ci left: 4.294939e-07	ci right 3.086858e-06	k: 5	n:3780000
KS ci ratio: 7.197209e-03	ci left: 7.250606e-02	ci right 7.303004e-02	k: 275062	n:3780000
SEC14L1   3780000 perm   6364 sec   (594 perm/sec)   p_kst 7.276772e-02   p_cons 1.322751e-06   p_joint 3.703704e-06

Joint ci ratio: 1.012138e+00	ci left: 2.019508e-06	ci right 6.197781e-06	k: 14	n:3790000
Cons ci ratio: 1.600332e+00	ci left: 4.283607e-07	ci right 3.078713e-06	k: 5	n:3790000
KS ci ratio: 7.187957e-03	ci left: 7.250175e-02	ci right 7.302502e-02	k: 275772	n:3790000
SEC14L1   3790000 perm   6395 sec   (593 perm/sec)   p_kst 7.276306e-02   p_cons 1.319261e-06   p_joint 3.693931e-06

Joint ci ratio: 1.012138e+00	ci left: 2.014194e-06	ci right 6.181472e-06	k: 14	n:3800000
Cons ci ratio: 1.600332e+00	ci left: 4.272334e-07	ci right 3.070611e-06	k: 5	n:3800000
KS ci ratio: 7.177816e-03	ci left: 7.251480e-02	ci right 7.303743e-02	k: 276548	n:3800000
SEC14L1   3800000 perm   6425 sec   (591 perm/sec)   p_kst 7.277579e-02   p_cons 1.315789e-06   p_joint 3.684211e-06

Joint ci ratio: 1.012138e+00	ci left: 2.008907e-06	ci right 6.165247e-06	k: 14	n:3810000
Cons ci ratio: 1.600332e+00	ci left: 4.261120e-07	ci right 3.062552e-06	k: 5	n:3810000
KS ci ratio: 7.167940e-03	ci left: 7.252359e-02	ci right 7.304556e-02	k: 277308	n:3810000
SEC14L1   3810000 perm   6456 sec   (590 perm/sec)   p_kst 7.278425e-02   p_cons 1.312336e-06   p_joint 3.674541e-06

Joint ci ratio: 1.012138e+00	ci left: 2.003648e-06	ci right 6.149108e-06	k: 14	n:3820000
Cons ci ratio: 1.600332e+00	ci left: 4.249966e-07	ci right 3.054535e-06	k: 5	n:3820000
KS ci ratio: 7.158536e-03	ci left: 7.252424e-02	ci right 7.304552e-02	k: 278037	n:3820000
SEC14L1   3820000 perm   6488 sec   (589 perm/sec)   p_kst 7.278455e-02   p_cons 1.308901e-06   p_joint 3.664921e-06

Joint ci ratio: 1.012138e+00	ci left: 1.998417e-06	ci right 6.133053e-06	k: 14	n:3830000
Cons ci ratio: 1.600332e+00	ci left: 4.238869e-07	ci right 3.046559e-06	k: 5	n:3830000
KS ci ratio: 7.148671e-03	ci left: 7.253426e-02	ci right 7.305490e-02	k: 278802	n:3830000
SEC14L1   3830000 perm   6519 sec   (588 perm/sec)   p_kst 7.279426e-02   p_cons 1.305483e-06   p_joint 3.655352e-06

Joint ci ratio: 1.012138e+00	ci left: 1.993212e-06	ci right 6.117081e-06	k: 14	n:3840000
Cons ci ratio: 1.600332e+00	ci left: 4.227830e-07	ci right 3.038626e-06	k: 5	n:3840000
KS ci ratio: 7.138653e-03	ci left: 7.254787e-02	ci right 7.306787e-02	k: 279581	n:3840000
SEC14L1   3840000 perm   6550 sec   (586 perm/sec)   p_kst 7.280755e-02   p_cons 1.302083e-06   p_joint 3.645833e-06

Joint ci ratio: 1.012138e+00	ci left: 1.988035e-06	ci right 6.101193e-06	k: 14	n:3850000
Cons ci ratio: 1.600332e+00	ci left: 4.216849e-07	ci right 3.030733e-06	k: 5	n:3850000
KS ci ratio: 7.129227e-03	ci left: 7.255104e-02	ci right 7.307038e-02	k: 280320	n:3850000
SEC14L1   3850000 perm   6581 sec   (585 perm/sec)   p_kst 7.281039e-02   p_cons 1.298701e-06   p_joint 3.636364e-06

Joint ci ratio: 1.012138e+00	ci left: 1.982885e-06	ci right 6.085387e-06	k: 14	n:3860000
Cons ci ratio: 1.600332e+00	ci left: 4.205925e-07	ci right 3.022881e-06	k: 5	n:3860000
KS ci ratio: 7.120507e-03	ci left: 7.254153e-02	ci right 7.306015e-02	k: 281010	n:3860000
SEC14L1   3860000 perm   6612 sec   (584 perm/sec)   p_kst 7.280052e-02   p_cons 1.295337e-06   p_joint 3.626943e-06

Joint ci ratio: 1.012138e+00	ci left: 1.977761e-06	ci right 6.069662e-06	k: 14	n:3870000
Cons ci ratio: 1.600332e+00	ci left: 4.195057e-07	ci right 3.015070e-06	k: 5	n:3870000
KS ci ratio: 7.111328e-03	ci left: 7.254134e-02	ci right 7.305930e-02	k: 281736	n:3870000
SEC14L1   3870000 perm   6643 sec   (583 perm/sec)   p_kst 7.280000e-02   p_cons 1.291990e-06   p_joint 3.617571e-06

Joint ci ratio: 1.012138e+00	ci left: 1.972664e-06	ci right 6.054019e-06	k: 14	n:3880000
Cons ci ratio: 1.600332e+00	ci left: 4.184245e-07	ci right 3.007300e-06	k: 5	n:3880000
KS ci ratio: 7.101209e-03	ci left: 7.255969e-02	ci right 7.307703e-02	k: 282534	n:3880000
SEC14L1   3880000 perm   6675 sec   (581 perm/sec)   p_kst 7.281804e-02   p_cons 1.288660e-06   p_joint 3.608247e-06

Joint ci ratio: 1.012138e+00	ci left: 1.967593e-06	ci right 6.038456e-06	k: 14	n:3890000
Cons ci ratio: 1.600332e+00	ci left: 4.173488e-07	ci right 2.999569e-06	k: 5	n:3890000
KS ci ratio: 7.092484e-03	ci left: 7.255227e-02	ci right 7.306893e-02	k: 283232	n:3890000
SEC14L1   3890000 perm   6707 sec   (580 perm/sec)   p_kst 7.281028e-02   p_cons 1.285347e-06   p_joint 3.598972e-06

Joint ci ratio: 1.012138e+00	ci left: 1.962548e-06	ci right 6.022972e-06	k: 14	n:3900000
Cons ci ratio: 1.600332e+00	ci left: 4.162787e-07	ci right 2.991877e-06	k: 5	n:3900000
KS ci ratio: 7.083723e-03	ci left: 7.254618e-02	ci right 7.306215e-02	k: 283935	n:3900000
SEC14L1   3900000 perm   6738 sec   (579 perm/sec)   p_kst 7.280385e-02   p_cons 1.282051e-06   p_joint 3.589744e-06

Joint ci ratio: 1.012138e+00	ci left: 1.957528e-06	ci right 6.007568e-06	k: 14	n:3910000
Cons ci ratio: 1.600332e+00	ci left: 4.152140e-07	ci right 2.984226e-06	k: 5	n:3910000
KS ci ratio: 7.074766e-03	ci left: 7.254446e-02	ci right 7.305976e-02	k: 284655	n:3910000
SEC14L1   3910000 perm   6771 sec   (577 perm/sec)   p_kst 7.280179e-02   p_cons 1.278772e-06   p_joint 3.580563e-06

Joint ci ratio: 1.012138e+00	ci left: 1.952535e-06	ci right 5.992243e-06	k: 14	n:3920000
Cons ci ratio: 1.600332e+00	ci left: 4.141548e-07	ci right 2.976613e-06	k: 5	n:3920000
KS ci ratio: 7.065656e-03	ci left: 7.254631e-02	ci right 7.306096e-02	k: 285389	n:3920000
SEC14L1   3920000 perm   6802 sec   (576 perm/sec)   p_kst 7.280332e-02   p_cons 1.275510e-06   p_joint 3.571429e-06

Joint ci ratio: 1.012138e+00	ci left: 1.947566e-06	ci right 5.976996e-06	k: 14	n:3930000
Cons ci ratio: 1.600332e+00	ci left: 4.131010e-07	ci right 2.969039e-06	k: 5	n:3930000
KS ci ratio: 7.056077e-03	ci left: 7.255780e-02	ci right 7.307183e-02	k: 286161	n:3930000
SEC14L1   3930000 perm   6834 sec   (575 perm/sec)   p_kst 7.281450e-02   p_cons 1.272265e-06   p_joint 3.562341e-06

Joint ci ratio: 1.012138e+00	ci left: 1.942623e-06	ci right 5.961826e-06	k: 14	n:3940000
Cons ci ratio: 1.600332e+00	ci left: 4.120525e-07	ci right 2.961503e-06	k: 5	n:3940000
KS ci ratio: 7.047423e-03	ci left: 7.255226e-02	ci right 7.306562e-02	k: 286866	n:3940000
SEC14L1   3940000 perm   6867 sec   (574 perm/sec)   p_kst 7.280863e-02   p_cons 1.269036e-06   p_joint 3.553299e-06

Joint ci ratio: 1.012138e+00	ci left: 1.937705e-06	ci right 5.946732e-06	k: 14	n:3950000
Cons ci ratio: 1.600332e+00	ci left: 4.110093e-07	ci right 2.954006e-06	k: 5	n:3950000
KS ci ratio: 7.038392e-03	ci left: 7.255459e-02	ci right 7.306730e-02	k: 287602	n:3950000
SEC14L1   3950000 perm   6900 sec   (572 perm/sec)   p_kst 7.281063e-02   p_cons 1.265823e-06   p_joint 3.544304e-06

Joint ci ratio: 1.012138e+00	ci left: 1.932812e-06	ci right 5.931715e-06	k: 14	n:3960000
Cons ci ratio: 1.600332e+00	ci left: 4.099714e-07	ci right 2.946546e-06	k: 5	n:3960000
KS ci ratio: 7.029357e-03	ci left: 7.255766e-02	ci right 7.306973e-02	k: 288341	n:3960000
SEC14L1   3960000 perm   6932 sec   (571 perm/sec)   p_kst 7.281338e-02   p_cons 1.262626e-06   p_joint 3.535354e-06

Joint ci ratio: 1.012138e+00	ci left: 1.927943e-06	ci right 5.916774e-06	k: 14	n:3970000
Cons ci ratio: 1.600332e+00	ci left: 4.089388e-07	ci right 2.939124e-06	k: 5	n:3970000
KS ci ratio: 7.020133e-03	ci left: 7.256499e-02	ci right 7.307644e-02	k: 289097	n:3970000
SEC14L1   3970000 perm   6965 sec   (570 perm/sec)   p_kst 7.282040e-02   p_cons 1.259446e-06   p_joint 3.526448e-06

Joint ci ratio: 1.012138e+00	ci left: 1.923099e-06	ci right 5.901908e-06	k: 14	n:3980000
Cons ci ratio: 1.600332e+00	ci left: 4.079113e-07	ci right 2.931739e-06	k: 5	n:3980000
KS ci ratio: 7.011455e-03	ci left: 7.256250e-02	ci right 7.307330e-02	k: 289814	n:3980000
SEC14L1   3980000 perm   6997 sec   (569 perm/sec)   p_kst 7.281759e-02   p_cons 1.256281e-06   p_joint 3.517588e-06

Joint ci ratio: 1.012138e+00	ci left: 1.918280e-06	ci right 5.887116e-06	k: 14	n:3990000
Cons ci ratio: 1.600332e+00	ci left: 4.068889e-07	ci right 2.924392e-06	k: 5	n:3990000
KS ci ratio: 7.003120e-03	ci left: 7.255402e-02	ci right 7.306415e-02	k: 290507	n:3990000
SEC14L1   3990000 perm   7028 sec   (568 perm/sec)   p_kst 7.280877e-02   p_cons 1.253133e-06   p_joint 3.508772e-06

Joint ci ratio: 1.012138e+00	ci left: 1.913484e-06	ci right 5.872398e-06	k: 14	n:4000000
Cons ci ratio: 1.600332e+00	ci left: 4.058717e-07	ci right 2.917081e-06	k: 5	n:4000000
KS ci ratio: 6.993831e-03	ci left: 7.256455e-02	ci right 7.307407e-02	k: 291276	n:4000000
SEC14L1   4000000 perm   7060 sec   (567 perm/sec)   p_kst 7.281900e-02   p_cons 1.250000e-06   p_joint 3.500000e-06

Joint ci ratio: 1.012138e+00	ci left: 1.908712e-06	ci right 5.857754e-06	k: 14	n:4010000
Cons ci ratio: 1.600332e+00	ci left: 4.048596e-07	ci right 2.909806e-06	k: 5	n:4010000
KS ci ratio: 6.984630e-03	ci left: 7.257403e-02	ci right 7.308295e-02	k: 292041	n:4010000
SEC14L1   4010000 perm   7093 sec   (565 perm/sec)   p_kst 7.282818e-02   p_cons 1.246883e-06   p_joint 3.491272e-06

Joint ci ratio: 1.012138e+00	ci left: 1.903964e-06	ci right 5.843182e-06	k: 14	n:4020000
Cons ci ratio: 1.600332e+00	ci left: 4.038525e-07	ci right 2.902568e-06	k: 5	n:4020000
KS ci ratio: 6.976378e-03	ci left: 7.256583e-02	ci right 7.307409e-02	k: 292735	n:4020000
SEC14L1   4020000 perm   7126 sec   (564 perm/sec)   p_kst 7.281965e-02   p_cons 1.243781e-06   p_joint 3.482587e-06

Joint ci ratio: 1.012138e+00	ci left: 1.899240e-06	ci right 5.828683e-06	k: 14	n:4030000
Cons ci ratio: 1.600332e+00	ci left: 4.028503e-07	ci right 2.895365e-06	k: 5	n:4030000
KS ci ratio: 6.967246e-03	ci left: 7.257526e-02	ci right 7.308292e-02	k: 293500	n:4030000
SEC14L1   4030000 perm   7158 sec   (563 perm/sec)   p_kst 7.282878e-02   p_cons 1.240695e-06   p_joint 3.473945e-06

Joint ci ratio: 1.012138e+00	ci left: 1.894538e-06	ci right 5.814256e-06	k: 14	n:4040000
Cons ci ratio: 1.600332e+00	ci left: 4.018532e-07	ci right 2.888199e-06	k: 5	n:4040000
KS ci ratio: 6.958877e-03	ci left: 7.257056e-02	ci right 7.307757e-02	k: 294208	n:4040000
SEC14L1   4040000 perm   7191 sec   (562 perm/sec)   p_kst 7.282376e-02   p_cons 1.237624e-06   p_joint 3.465347e-06

Joint ci ratio: 1.012138e+00	ci left: 1.889861e-06	ci right 5.799900e-06	k: 14	n:4050000
Cons ci ratio: 1.600332e+00	ci left: 4.008610e-07	ci right 2.881067e-06	k: 5	n:4050000
KS ci ratio: 6.950258e-03	ci left: 7.257131e-02	ci right 7.307770e-02	k: 294938	n:4050000
SEC14L1   4050000 perm   7223 sec   (561 perm/sec)   p_kst 7.282420e-02   p_cons 1.234568e-06   p_joint 3.456790e-06

Joint ci ratio: 1.012138e+00	ci left: 1.885206e-06	ci right 5.785614e-06	k: 14	n:4060000
Cons ci ratio: 1.600332e+00	ci left: 3.998736e-07	ci right 2.873971e-06	k: 5	n:4060000
KS ci ratio: 6.941848e-03	ci left: 7.256861e-02	ci right 7.307436e-02	k: 295654	n:4060000
SEC14L1   4060000 perm   7256 sec   (560 perm/sec)   p_kst 7.282118e-02   p_cons 1.231527e-06   p_joint 3.448276e-06

Joint ci ratio: 1.012138e+00	ci left: 1.880574e-06	ci right 5.771399e-06	k: 14	n:4070000
Cons ci ratio: 1.600332e+00	ci left: 3.988911e-07	ci right 2.866910e-06	k: 5	n:4070000
KS ci ratio: 6.933469e-03	ci left: 7.256593e-02	ci right 7.307105e-02	k: 296370	n:4070000
SEC14L1   4070000 perm   7289 sec   (558 perm/sec)   p_kst 7.281818e-02   p_cons 1.228501e-06   p_joint 3.439803e-06

Joint ci ratio: 1.012138e+00	ci left: 1.875965e-06	ci right 5.757253e-06	k: 14	n:4080000
Cons ci ratio: 1.600332e+00	ci left: 3.979134e-07	ci right 2.859883e-06	k: 5	n:4080000
KS ci ratio: 6.924655e-03	ci left: 7.257231e-02	ci right 7.307683e-02	k: 297123	n:4080000
SEC14L1   4080000 perm   7322 sec   (557 perm/sec)   p_kst 7.282426e-02   p_cons 1.225490e-06   p_joint 3.431373e-06

Joint ci ratio: 1.012138e+00	ci left: 1.871378e-06	ci right 5.743177e-06	k: 14	n:4090000
Cons ci ratio: 1.600332e+00	ci left: 3.969406e-07	ci right 2.852891e-06	k: 5	n:4090000
KS ci ratio: 6.916162e-03	ci left: 7.257305e-02	ci right 7.307695e-02	k: 297853	n:4090000
SEC14L1   4090000 perm   7355 sec   (556 perm/sec)   p_kst 7.282469e-02   p_cons 1.222494e-06   p_joint 3.422983e-06

Joint ci ratio: 1.012138e+00	ci left: 1.866813e-06	ci right 5.729169e-06	k: 14	n:4100000
Cons ci ratio: 1.600332e+00	ci left: 3.959724e-07	ci right 2.845932e-06	k: 5	n:4100000
KS ci ratio: 6.907801e-03	ci left: 7.257183e-02	ci right 7.307511e-02	k: 298575	n:4100000
SEC14L1   4100000 perm   7388 sec   (555 perm/sec)   p_kst 7.282317e-02   p_cons 1.219512e-06   p_joint 3.414634e-06

Joint ci ratio: 1.012138e+00	ci left: 1.862271e-06	ci right 5.715230e-06	k: 14	n:4110000
Cons ci ratio: 1.600332e+00	ci left: 3.950090e-07	ci right 2.839008e-06	k: 5	n:4110000
KS ci ratio: 6.899208e-03	ci left: 7.257572e-02	ci right 7.307841e-02	k: 299318	n:4110000
SEC14L1   4110000 perm   7422 sec   (554 perm/sec)   p_kst 7.282676e-02   p_cons 1.216545e-06   p_joint 3.406326e-06

Joint ci ratio: 1.012138e+00	ci left: 1.857751e-06	ci right 5.701358e-06	k: 14	n:4120000
Cons ci ratio: 1.600332e+00	ci left: 3.940502e-07	ci right 2.832117e-06	k: 5	n:4120000
KS ci ratio: 6.890784e-03	ci left: 7.257693e-02	ci right 7.307901e-02	k: 300050	n:4120000
SEC14L1   4120000 perm   7455 sec   (553 perm/sec)   p_kst 7.282767e-02   p_cons 1.213592e-06   p_joint 3.398058e-06

Joint ci ratio: 1.012138e+00	ci left: 1.853253e-06	ci right 5.687553e-06	k: 14	n:4130000
Cons ci ratio: 1.600332e+00	ci left: 3.930961e-07	ci right 2.825260e-06	k: 5	n:4130000
KS ci ratio: 6.882354e-03	ci left: 7.257886e-02	ci right 7.308033e-02	k: 300785	n:4130000
SEC14L1   4130000 perm   7488 sec   (552 perm/sec)   p_kst 7.282930e-02   p_cons 1.210654e-06   p_joint 3.389831e-06

Joint ci ratio: 1.012138e+00	ci left: 1.848777e-06	ci right 5.673815e-06	k: 14	n:4140000
Cons ci ratio: 1.600332e+00	ci left: 3.921466e-07	ci right 2.818435e-06	k: 5	n:4140000
KS ci ratio: 6.873967e-03	ci left: 7.258054e-02	ci right 7.308141e-02	k: 301519	n:4140000
SEC14L1   4140000 perm   7522 sec   (550 perm/sec)   p_kst 7.283068e-02   p_cons 1.207729e-06   p_joint 3.381643e-06

Joint ci ratio: 1.012138e+00	ci left: 1.844322e-06	ci right 5.660143e-06	k: 14	n:4150000
Cons ci ratio: 1.600332e+00	ci left: 3.912017e-07	ci right 2.811644e-06	k: 5	n:4150000
KS ci ratio: 6.866198e-03	ci left: 7.257066e-02	ci right 7.307090e-02	k: 302205	n:4150000
SEC14L1   4150000 perm   7555 sec   (549 perm/sec)   p_kst 7.282048e-02   p_cons 1.204819e-06   p_joint 3.373494e-06

Joint ci ratio: 1.012138e+00	ci left: 1.839888e-06	ci right 5.646537e-06	k: 14	n:4160000
Cons ci ratio: 1.600332e+00	ci left: 3.902613e-07	ci right 2.804885e-06	k: 5	n:4160000
KS ci ratio: 6.857650e-03	ci left: 7.257667e-02	ci right 7.307632e-02	k: 302957	n:4160000
SEC14L1   4160000 perm   7589 sec   (548 perm/sec)   p_kst 7.282620e-02   p_cons 1.201923e-06   p_joint 3.365385e-06

Joint ci ratio: 1.012138e+00	ci left: 1.835476e-06	ci right 5.632996e-06	k: 14	n:4170000
Cons ci ratio: 1.600332e+00	ci left: 3.893254e-07	ci right 2.798159e-06	k: 5	n:4170000
KS ci ratio: 6.849243e-03	ci left: 7.258050e-02	ci right 7.307956e-02	k: 303700	n:4170000
SEC14L1   4170000 perm   7623 sec   (547 perm/sec)   p_kst 7.282974e-02   p_cons 1.199041e-06   p_joint 3.357314e-06

Joint ci ratio: 1.012138e+00	ci left: 1.831085e-06	ci right 5.619520e-06	k: 14	n:4180000
Cons ci ratio: 1.600332e+00	ci left: 3.883940e-07	ci right 2.791465e-06	k: 5	n:4180000
KS ci ratio: 6.841110e-03	ci left: 7.257954e-02	ci right 7.307799e-02	k: 304423	n:4180000
SEC14L1   4180000 perm   7657 sec   (546 perm/sec)   p_kst 7.282847e-02   p_cons 1.196172e-06   p_joint 3.349282e-06

Joint ci ratio: 1.012138e+00	ci left: 1.826715e-06	ci right 5.606108e-06	k: 14	n:4190000
Cons ci ratio: 1.600332e+00	ci left: 3.874670e-07	ci right 2.784803e-06	k: 5	n:4190000
KS ci ratio: 6.832208e-03	ci left: 7.259430e-02	ci right 7.309221e-02	k: 305212	n:4190000
SEC14L1   4190000 perm   7691 sec   (545 perm/sec)   p_kst 7.284296e-02   p_cons 1.193317e-06   p_joint 3.341289e-06

Joint ci ratio: 1.012138e+00	ci left: 1.822366e-06	ci right 5.592761e-06	k: 14	n:4200000
Cons ci ratio: 1.600332e+00	ci left: 3.865445e-07	ci right 2.778172e-06	k: 5	n:4200000
KS ci ratio: 6.824316e-03	ci left: 7.258974e-02	ci right 7.308704e-02	k: 305920	n:4200000
SEC14L1   4200000 perm   7725 sec   (544 perm/sec)   p_kst 7.283810e-02   p_cons 1.190476e-06   p_joint 3.333333e-06

Joint ci ratio: 1.012138e+00	ci left: 1.818037e-06	ci right 5.579476e-06	k: 14	n:4210000
Cons ci ratio: 1.600332e+00	ci left: 3.856263e-07	ci right 2.771573e-06	k: 5	n:4210000
KS ci ratio: 6.816474e-03	ci left: 7.258473e-02	ci right 7.308142e-02	k: 306626	n:4210000
SEC14L1   4210000 perm   7759 sec   (543 perm/sec)   p_kst 7.283278e-02   p_cons 1.187648e-06   p_joint 3.325416e-06

Joint ci ratio: 1.012138e+00	ci left: 1.813729e-06	ci right 5.566255e-06	k: 14	n:4220000
Cons ci ratio: 1.600332e+00	ci left: 3.847125e-07	ci right 2.765005e-06	k: 5	n:4220000
KS ci ratio: 6.808445e-03	ci left: 7.258400e-02	ci right 7.308010e-02	k: 307350	n:4220000
SEC14L1   4220000 perm   7793 sec   (541 perm/sec)   p_kst 7.283175e-02   p_cons 1.184834e-06   p_joint 3.317536e-06

Joint ci ratio: 1.012138e+00	ci left: 1.809441e-06	ci right 5.553096e-06	k: 14	n:4230000
Cons ci ratio: 1.600332e+00	ci left: 3.838030e-07	ci right 2.758469e-06	k: 5	n:4230000
KS ci ratio: 6.800491e-03	ci left: 7.258233e-02	ci right 7.307783e-02	k: 308070	n:4230000
SEC14L1   4230000 perm   7828 sec   (540 perm/sec)   p_kst 7.282979e-02   p_cons 1.182033e-06   p_joint 3.309693e-06

Joint ci ratio: 1.012138e+00	ci left: 1.805173e-06	ci right 5.539999e-06	k: 14	n:4240000
Cons ci ratio: 1.600332e+00	ci left: 3.828978e-07	ci right 2.751963e-06	k: 5	n:4240000
KS ci ratio: 6.792245e-03	ci left: 7.258702e-02	ci right 7.308196e-02	k: 308817	n:4240000
SEC14L1   4240000 perm   7863 sec   (539 perm/sec)   p_kst 7.283420e-02   p_cons 1.179245e-06   p_joint 3.301887e-06

Joint ci ratio: 1.012138e+00	ci left: 1.800926e-06	ci right 5.526964e-06	k: 14	n:4250000
Cons ci ratio: 1.600332e+00	ci left: 3.819969e-07	ci right 2.745488e-06	k: 5	n:4250000
KS ci ratio: 6.783828e-03	ci left: 7.259569e-02	ci right 7.309007e-02	k: 309581	n:4250000
SEC14L1   4250000 perm   7898 sec   (538 perm/sec)   p_kst 7.284259e-02   p_cons 1.176471e-06   p_joint 3.294118e-06

Joint ci ratio: 1.012138e+00	ci left: 1.796698e-06	ci right 5.513989e-06	k: 14	n:4260000
Cons ci ratio: 1.600332e+00	ci left: 3.811002e-07	ci right 2.739043e-06	k: 5	n:4260000
KS ci ratio: 6.775231e-03	ci left: 7.260854e-02	ci right 7.310237e-02	k: 310363	n:4260000
SEC14L1   4260000 perm   7932 sec   (537 perm/sec)   p_kst 7.285516e-02   p_cons 1.173709e-06   p_joint 3.286385e-06

Joint ci ratio: 1.012138e+00	ci left: 1.792491e-06	ci right 5.501076e-06	k: 14	n:4270000
Cons ci ratio: 1.600332e+00	ci left: 3.802077e-07	ci right 2.732628e-06	k: 5	n:4270000
KS ci ratio: 6.767170e-03	ci left: 7.261127e-02	ci right 7.310453e-02	k: 311102	n:4270000
SEC14L1   4270000 perm   7966 sec   (536 perm/sec)   p_kst 7.285761e-02   p_cons 1.170960e-06   p_joint 3.278689e-06

Joint ci ratio: 1.012138e+00	ci left: 1.788303e-06	ci right 5.488223e-06	k: 14	n:4280000
Cons ci ratio: 1.600332e+00	ci left: 3.793194e-07	ci right 2.726244e-06	k: 5	n:4280000
KS ci ratio: 6.759571e-03	ci left: 7.260536e-02	ci right 7.309803e-02	k: 311804	n:4280000
SEC14L1   4280000 perm   8001 sec   (535 perm/sec)   p_kst 7.285140e-02   p_cons 1.168224e-06   p_joint 3.271028e-06

Joint ci ratio: 1.012138e+00	ci left: 1.784134e-06	ci right 5.475430e-06	k: 14	n:4290000
Cons ci ratio: 1.600332e+00	ci left: 3.784352e-07	ci right 2.719889e-06	k: 5	n:4290000
KS ci ratio: 6.751659e-03	ci left: 7.260622e-02	ci right 7.309832e-02	k: 312535	n:4290000
SEC14L1   4290000 perm   8036 sec   (534 perm/sec)   p_kst 7.285198e-02   p_cons 1.165501e-06   p_joint 3.263403e-06

Joint ci ratio: 1.012138e+00	ci left: 1.779985e-06	ci right 5.462697e-06	k: 14	n:4300000
Cons ci ratio: 1.600332e+00	ci left: 3.775551e-07	ci right 2.713563e-06	k: 5	n:4300000
KS ci ratio: 6.744204e-03	ci left: 7.259849e-02	ci right 7.308999e-02	k: 313229	n:4300000
SEC14L1   4300000 perm   8071 sec   (533 perm/sec)   p_kst 7.284395e-02   p_cons 1.162791e-06   p_joint 3.255814e-06

Joint ci ratio: 1.012138e+00	ci left: 1.775855e-06	ci right 5.450022e-06	k: 14	n:4310000
Cons ci ratio: 1.600332e+00	ci left: 3.766791e-07	ci right 2.707268e-06	k: 5	n:4310000
KS ci ratio: 6.736497e-03	ci left: 7.259636e-02	ci right 7.308728e-02	k: 313947	n:4310000
SEC14L1   4310000 perm   8106 sec   (532 perm/sec)   p_kst 7.284153e-02   p_cons 1.160093e-06   p_joint 3.248260e-06

Joint ci ratio: 1.012138e+00	ci left: 1.771744e-06	ci right 5.437406e-06	k: 14	n:4320000
Cons ci ratio: 1.600332e+00	ci left: 3.758071e-07	ci right 2.701001e-06	k: 5	n:4320000
KS ci ratio: 6.729207e-03	ci left: 7.258638e-02	ci right 7.307670e-02	k: 314631	n:4320000
SEC14L1   4320000 perm   8140 sec   (531 perm/sec)   p_kst 7.283125e-02   p_cons 1.157407e-06   p_joint 3.240741e-06

Joint ci ratio: 1.012138e+00	ci left: 1.767652e-06	ci right 5.424849e-06	k: 14	n:4330000
Cons ci ratio: 1.600332e+00	ci left: 3.749392e-07	ci right 2.694763e-06	k: 5	n:4330000
KS ci ratio: 6.721632e-03	ci left: 7.258267e-02	ci right 7.307241e-02	k: 315342	n:4330000
SEC14L1   4330000 perm   8176 sec   (530 perm/sec)   p_kst 7.282725e-02   p_cons 1.154734e-06   p_joint 3.233256e-06

Joint ci ratio: 1.012138e+00	ci left: 1.763579e-06	ci right 5.412349e-06	k: 14	n:4340000
Cons ci ratio: 1.600332e+00	ci left: 3.740753e-07	ci right 2.688554e-06	k: 5	n:4340000
KS ci ratio: 6.714173e-03	ci left: 7.257713e-02	ci right 7.306629e-02	k: 316045	n:4340000
SEC14L1   4340000 perm   8211 sec   (529 perm/sec)   p_kst 7.282143e-02   p_cons 1.152074e-06   p_joint 3.225806e-06

Joint ci ratio: 1.012138e+00	ci left: 1.759525e-06	ci right 5.399907e-06	k: 14	n:4350000
Cons ci ratio: 1.600332e+00	ci left: 3.732154e-07	ci right 2.682373e-06	k: 5	n:4350000
KS ci ratio: 6.706750e-03	ci left: 7.257140e-02	ci right 7.305997e-02	k: 316747	n:4350000
SEC14L1   4350000 perm   8246 sec   (528 perm/sec)   p_kst 7.281540e-02   p_cons 1.149425e-06   p_joint 3.218391e-06

Joint ci ratio: 1.012138e+00	ci left: 1.755490e-06	ci right 5.387522e-06	k: 14	n:4360000
Cons ci ratio: 1.600332e+00	ci left: 3.723594e-07	ci right 2.676221e-06	k: 5	n:4360000
KS ci ratio: 6.698829e-03	ci left: 7.257622e-02	ci right 7.306425e-02	k: 317495	n:4360000
SEC14L1   4360000 perm   8282 sec   (526 perm/sec)   p_kst 7.281995e-02   p_cons 1.146789e-06   p_joint 3.211009e-06

Joint ci ratio: 1.012138e+00	ci left: 1.751473e-06	ci right 5.375194e-06	k: 14	n:4370000
Cons ci ratio: 1.600332e+00	ci left: 3.715073e-07	ci right 2.670097e-06	k: 5	n:4370000
KS ci ratio: 6.691208e-03	ci left: 7.257554e-02	ci right 7.306301e-02	k: 318219	n:4370000
SEC14L1   4370000 perm   8317 sec   (525 perm/sec)   p_kst 7.281899e-02   p_cons 1.144165e-06   p_joint 3.203661e-06

Joint ci ratio: 1.012138e+00	ci left: 1.747474e-06	ci right 5.362921e-06	k: 14	n:4380000
Cons ci ratio: 1.600332e+00	ci left: 3.706591e-07	ci right 2.664001e-06	k: 5	n:4380000
KS ci ratio: 6.683273e-03	ci left: 7.258170e-02	ci right 7.306863e-02	k: 318973	n:4380000
SEC14L1   4380000 perm   8353 sec   (524 perm/sec)   p_kst 7.282489e-02   p_cons 1.141553e-06   p_joint 3.196347e-06

Joint ci ratio: 1.012138e+00	ci left: 1.743493e-06	ci right 5.350705e-06	k: 14	n:4390000
Cons ci ratio: 1.600332e+00	ci left: 3.698148e-07	ci right 2.657932e-06	k: 5	n:4390000
KS ci ratio: 6.675491e-03	ci left: 7.258534e-02	ci right 7.307172e-02	k: 319716	n:4390000
SEC14L1   4390000 perm   8389 sec   (523 perm/sec)   p_kst 7.282825e-02   p_cons 1.138952e-06   p_joint 3.189066e-06

Joint ci ratio: 1.012138e+00	ci left: 1.739531e-06	ci right 5.338544e-06	k: 14	n:4400000
Cons ci ratio: 1.600332e+00	ci left: 3.689743e-07	ci right 2.651892e-06	k: 5	n:4400000
KS ci ratio: 6.667186e-03	ci left: 7.260007e-02	ci right 7.308595e-02	k: 320508	n:4400000
SEC14L1   4400000 perm   8425 sec   (522 perm/sec)   p_kst 7.284273e-02   p_cons 1.136364e-06   p_joint 3.181818e-06

Joint ci ratio: 1.012138e+00	ci left: 1.735586e-06	ci right 5.326439e-06	k: 14	n:4410000
Cons ci ratio: 1.600332e+00	ci left: 3.681376e-07	ci right 2.645878e-06	k: 5	n:4410000
KS ci ratio: 6.659817e-03	ci left: 7.259640e-02	ci right 7.308171e-02	k: 321219	n:4410000
SEC14L1   4410000 perm   8460 sec   (521 perm/sec)   p_kst 7.283878e-02   p_cons 1.133787e-06   p_joint 3.174603e-06

Joint ci ratio: 1.012138e+00	ci left: 1.731659e-06	ci right 5.314388e-06	k: 14	n:4420000
Cons ci ratio: 1.600332e+00	ci left: 3.673047e-07	ci right 2.639892e-06	k: 5	n:4420000
KS ci ratio: 6.652339e-03	ci left: 7.259546e-02	ci right 7.308022e-02	k: 321942	n:4420000
SEC14L1   4420000 perm   8495 sec   (520 perm/sec)   p_kst 7.283756e-02   p_cons 1.131222e-06   p_joint 3.167421e-06

Joint ci ratio: 1.012138e+00	ci left: 1.727751e-06	ci right 5.302392e-06	k: 14	n:4430000
Cons ci ratio: 1.600332e+00	ci left: 3.664756e-07	ci right 2.633933e-06	k: 5	n:4430000
KS ci ratio: 6.643943e-03	ci left: 7.261368e-02	ci right 7.309794e-02	k: 322750	n:4430000
SEC14L1   4430000 perm   8531 sec   (519 perm/sec)   p_kst 7.285553e-02   p_cons 1.128668e-06   p_joint 3.160271e-06

Joint ci ratio: 1.012138e+00	ci left: 1.723859e-06	ci right 5.290450e-06	k: 14	n:4440000
Cons ci ratio: 1.600332e+00	ci left: 3.656502e-07	ci right 2.628001e-06	k: 5	n:4440000
KS ci ratio: 6.636076e-03	ci left: 7.262170e-02	ci right 7.310544e-02	k: 323513	n:4440000
SEC14L1   4440000 perm   8567 sec   (518 perm/sec)   p_kst 7.286329e-02   p_cons 1.126126e-06   p_joint 3.153153e-06

Joint ci ratio: 1.012138e+00	ci left: 1.719985e-06	ci right 5.278561e-06	k: 14	n:4450000
Cons ci ratio: 1.600332e+00	ci left: 3.648285e-07	ci right 2.622095e-06	k: 5	n:4450000
KS ci ratio: 6.628600e-03	ci left: 7.262227e-02	ci right 7.310547e-02	k: 324243	n:4450000
SEC14L1   4450000 perm   8602 sec   (517 perm/sec)   p_kst 7.286360e-02   p_cons 1.123596e-06   p_joint 3.146067e-06

Joint ci ratio: 1.012138e+00	ci left: 1.716129e-06	ci right 5.266726e-06	k: 14	n:4460000
Cons ci ratio: 1.600332e+00	ci left: 3.640105e-07	ci right 2.616216e-06	k: 5	n:4460000
KS ci ratio: 6.621468e-03	ci left: 7.261636e-02	ci right 7.309900e-02	k: 324944	n:4460000
SEC14L1   4460000 perm   8639 sec   (516 perm/sec)   p_kst 7.285740e-02   p_cons 1.121076e-06   p_joint 3.139013e-06

Joint ci ratio: 1.012138e+00	ci left: 1.712290e-06	ci right 5.254943e-06	k: 14	n:4470000
Cons ci ratio: 1.600332e+00	ci left: 3.631962e-07	ci right 2.610363e-06	k: 5	n:4470000
KS ci ratio: 6.613790e-03	ci left: 7.262208e-02	ci right 7.310420e-02	k: 325697	n:4470000
SEC14L1   4470000 perm   8675 sec   (515 perm/sec)   p_kst 7.286286e-02   p_cons 1.118568e-06   p_joint 3.131991e-06

Joint ci ratio: 1.012138e+00	ci left: 1.708468e-06	ci right 5.243213e-06	k: 14	n:4480000
Cons ci ratio: 1.600332e+00	ci left: 3.623855e-07	ci right 2.604536e-06	k: 5	n:4480000
KS ci ratio: 6.606422e-03	ci left: 7.262199e-02	ci right 7.310356e-02	k: 326424	n:4480000
SEC14L1   4480000 perm   8712 sec   (514 perm/sec)   p_kst 7.286250e-02   p_cons 1.116071e-06   p_joint 3.125000e-06

Joint ci ratio: 1.012138e+00	ci left: 1.704663e-06	ci right 5.231536e-06	k: 14	n:4490000
Cons ci ratio: 1.600332e+00	ci left: 3.615784e-07	ci right 2.598736e-06	k: 5	n:4490000
KS ci ratio: 6.599482e-03	ci left: 7.261367e-02	ci right 7.309468e-02	k: 327114	n:4490000
SEC14L1   4490000 perm   8748 sec   (513 perm/sec)   p_kst 7.285390e-02   p_cons 1.113586e-06   p_joint 3.118040e-06

Joint ci ratio: 1.012138e+00	ci left: 1.700874e-06	ci right 5.219910e-06	k: 14	n:4500000
Cons ci ratio: 1.600332e+00	ci left: 3.607748e-07	ci right 2.592961e-06	k: 5	n:4500000
KS ci ratio: 6.591966e-03	ci left: 7.261759e-02	ci right 7.309807e-02	k: 327859	n:4500000
SEC14L1   4500000 perm   8784 sec   (512 perm/sec)   p_kst 7.285756e-02   p_cons 1.111111e-06   p_joint 3.111111e-06

Joint ci ratio: 1.012138e+00	ci left: 1.697103e-06	ci right 5.208336e-06	k: 14	n:4510000
Cons ci ratio: 1.600332e+00	ci left: 3.599749e-07	ci right 2.587211e-06	k: 5	n:4510000
KS ci ratio: 6.584520e-03	ci left: 7.262060e-02	ci right 7.310057e-02	k: 328600	n:4510000
SEC14L1   4510000 perm   8821 sec   (511 perm/sec)   p_kst 7.286031e-02   p_cons 1.108647e-06   p_joint 3.104213e-06

Joint ci ratio: 1.012138e+00	ci left: 1.693348e-06	ci right 5.196813e-06	k: 14	n:4520000
Cons ci ratio: 1.600332e+00	ci left: 3.591785e-07	ci right 2.581487e-06	k: 5	n:4520000
KS ci ratio: 6.577196e-03	ci left: 7.262162e-02	ci right 7.310105e-02	k: 329332	n:4520000
SEC14L1   4520000 perm   8858 sec   (510 perm/sec)   p_kst 7.286106e-02   p_cons 1.106195e-06   p_joint 3.097345e-06

Joint ci ratio: 1.012138e+00	ci left: 1.689610e-06	ci right 5.185341e-06	k: 14	n:4530000
Cons ci ratio: 1.600332e+00	ci left: 3.583856e-07	ci right 2.575789e-06	k: 5	n:4530000
KS ci ratio: 6.570100e-03	ci left: 7.261844e-02	ci right 7.309734e-02	k: 330045	n:4530000
SEC14L1   4530000 perm   8895 sec   (509 perm/sec)   p_kst 7.285762e-02   p_cons 1.103753e-06   p_joint 3.090508e-06

Joint ci ratio: 1.012138e+00	ci left: 1.685889e-06	ci right 5.173920e-06	k: 14	n:4540000
Cons ci ratio: 1.600332e+00	ci left: 3.575962e-07	ci right 2.570115e-06	k: 5	n:4540000
KS ci ratio: 6.562823e-03	ci left: 7.261946e-02	ci right 7.309783e-02	k: 330777	n:4540000
SEC14L1   4540000 perm   8931 sec   (508 perm/sec)   p_kst 7.285837e-02   p_cons 1.101322e-06   p_joint 3.083700e-06

Joint ci ratio: 1.012138e+00	ci left: 1.682183e-06	ci right 5.162549e-06	k: 14	n:4550000
Cons ci ratio: 1.600332e+00	ci left: 3.568103e-07	ci right 2.564467e-06	k: 5	n:4550000
KS ci ratio: 6.555699e-03	ci left: 7.261784e-02	ci right 7.309567e-02	k: 331497	n:4550000
SEC14L1   4550000 perm   8967 sec   (507 perm/sec)   p_kst 7.285648e-02   p_cons 1.098901e-06   p_joint 3.076923e-06

Joint ci ratio: 1.012138e+00	ci left: 1.678494e-06	ci right 5.151227e-06	k: 14	n:4560000
Cons ci ratio: 1.600332e+00	ci left: 3.560278e-07	ci right 2.558843e-06	k: 5	n:4560000
KS ci ratio: 6.548704e-03	ci left: 7.261403e-02	ci right 7.309133e-02	k: 332207	n:4560000
SEC14L1   4560000 perm   9004 sec   (506 perm/sec)   p_kst 7.285241e-02   p_cons 1.096491e-06   p_joint 3.070175e-06

Joint ci ratio: 1.012138e+00	ci left: 1.674822e-06	ci right 5.139956e-06	k: 14	n:4570000
Cons ci ratio: 1.600332e+00	ci left: 3.552488e-07	ci right 2.553244e-06	k: 5	n:4570000
KS ci ratio: 6.541954e-03	ci left: 7.260566e-02	ci right 7.308241e-02	k: 332896	n:4570000
SEC14L1   4570000 perm   9040 sec   (506 perm/sec)   p_kst 7.284376e-02   p_cons 1.094092e-06   p_joint 3.063457e-06

Joint ci ratio: 1.012138e+00	ci left: 1.671165e-06	ci right 5.128733e-06	k: 14	n:4580000
Cons ci ratio: 1.600332e+00	ci left: 3.544731e-07	ci right 2.547669e-06	k: 5	n:4580000
KS ci ratio: 6.534781e-03	ci left: 7.260648e-02	ci right 7.308271e-02	k: 333627	n:4580000
SEC14L1   4580000 perm   9077 sec   (505 perm/sec)   p_kst 7.284432e-02   p_cons 1.091703e-06   p_joint 3.056769e-06

Joint ci ratio: 1.012138e+00	ci left: 1.667524e-06	ci right 5.117559e-06	k: 14	n:4590000
Cons ci ratio: 1.600332e+00	ci left: 3.537008e-07	ci right 2.542118e-06	k: 5	n:4590000
KS ci ratio: 6.528074e-03	ci left: 7.259816e-02	ci right 7.307384e-02	k: 334316	n:4590000
SEC14L1   4590000 perm   9115 sec   (504 perm/sec)   p_kst 7.283573e-02   p_cons 1.089325e-06   p_joint 3.050109e-06

Joint ci ratio: 1.012138e+00	ci left: 1.663899e-06	ci right 5.106434e-06	k: 14	n:4600000
Cons ci ratio: 1.600332e+00	ci left: 3.529319e-07	ci right 2.536592e-06	k: 5	n:4600000
KS ci ratio: 6.520853e-03	ci left: 7.260094e-02	ci right 7.307612e-02	k: 335056	n:4600000
SEC14L1   4600000 perm   9151 sec   (503 perm/sec)   p_kst 7.283826e-02   p_cons 1.086957e-06   p_joint 3.043478e-06

Joint ci ratio: 1.012138e+00	ci left: 1.660290e-06	ci right 5.095357e-06	k: 14	n:4610000
Cons ci ratio: 1.600332e+00	ci left: 3.521663e-07	ci right 2.531090e-06	k: 5	n:4610000
KS ci ratio: 6.513676e-03	ci left: 7.260328e-02	ci right 7.307795e-02	k: 335794	n:4610000
SEC14L1   4610000 perm   9189 sec   (502 perm/sec)   p_kst 7.284035e-02   p_cons 1.084599e-06   p_joint 3.036876e-06

Joint ci ratio: 9.799982e-01	ci left: 1.817184e-06	ci right 5.355020e-06	k: 15	n:4620000
Cons ci ratio: 1.481619e+00	ci left: 4.766006e-07	ci right 2.826724e-06	k: 6	n:4620000
KS ci ratio: 6.506929e-03	ci left: 7.259718e-02	ci right 7.307132e-02	k: 336493	n:4620000
SEC14L1   4620000 perm   9226 sec   (501 perm/sec)   p_kst 7.283398e-02   p_cons 1.298701e-06   p_joint 3.246753e-06

Joint ci ratio: 9.799982e-01	ci left: 1.813259e-06	ci right 5.343454e-06	k: 15	n:4630000
Cons ci ratio: 1.481619e+00	ci left: 4.755713e-07	ci right 2.820619e-06	k: 6	n:4630000
KS ci ratio: 6.499642e-03	ci left: 7.260276e-02	ci right 7.307639e-02	k: 337246	n:4630000
SEC14L1   4630000 perm   9263 sec   (500 perm/sec)   p_kst 7.283931e-02   p_cons 1.295896e-06   p_joint 3.239741e-06

Joint ci ratio: 9.799982e-01	ci left: 1.809352e-06	ci right 5.331938e-06	k: 15	n:4640000
Cons ci ratio: 1.481619e+00	ci left: 4.745463e-07	ci right 2.814540e-06	k: 6	n:4640000
KS ci ratio: 6.492752e-03	ci left: 7.260056e-02	ci right 7.307368e-02	k: 337963	n:4640000
SEC14L1   4640000 perm   9300 sec   (499 perm/sec)   p_kst 7.283685e-02   p_cons 1.293103e-06   p_joint 3.232759e-06

Joint ci ratio: 9.799982e-01	ci left: 1.805460e-06	ci right 5.320472e-06	k: 15	n:4650000
Cons ci ratio: 1.481619e+00	ci left: 4.735258e-07	ci right 2.808487e-06	k: 6	n:4650000
KS ci ratio: 6.485244e-03	ci left: 7.261169e-02	ci right 7.308433e-02	k: 338742	n:4650000
SEC14L1   4650000 perm   9338 sec   (498 perm/sec)   p_kst 7.284774e-02   p_cons 1.290323e-06   p_joint 3.225806e-06

Joint ci ratio: 9.799982e-01	ci left: 1.801586e-06	ci right 5.309054e-06	k: 15	n:4660000
Cons ci ratio: 1.481619e+00	ci left: 4.725096e-07	ci right 2.802460e-06	k: 6	n:4660000
KS ci ratio: 6.478596e-03	ci left: 7.260541e-02	ci right 7.307752e-02	k: 339440	n:4660000
SEC14L1   4660000 perm   9376 sec   (497 perm/sec)   p_kst 7.284120e-02   p_cons 1.287554e-06   p_joint 3.218884e-06

Joint ci ratio: 9.799982e-01	ci left: 1.797728e-06	ci right 5.297686e-06	k: 15	n:4670000
Cons ci ratio: 1.481619e+00	ci left: 4.714978e-07	ci right 2.796459e-06	k: 6	n:4670000
KS ci ratio: 6.471075e-03	ci left: 7.261776e-02	ci right 7.308941e-02	k: 340225	n:4670000
SEC14L1   4670000 perm   9413 sec   (496 perm/sec)   p_kst 7.285332e-02   p_cons 1.284797e-06   p_joint 3.211991e-06

Joint ci ratio: 9.799982e-01	ci left: 1.793887e-06	ci right 5.286366e-06	k: 15	n:4680000
Cons ci ratio: 1.481619e+00	ci left: 4.704904e-07	ci right 2.790484e-06	k: 6	n:4680000
KS ci ratio: 6.464133e-03	ci left: 7.261854e-02	ci right 7.308968e-02	k: 340956	n:4680000
SEC14L1   4680000 perm   9451 sec   (495 perm/sec)   p_kst 7.285385e-02   p_cons 1.282051e-06   p_joint 3.205128e-06

Joint ci ratio: 9.799982e-01	ci left: 1.790062e-06	ci right 5.275094e-06	k: 15	n:4690000
Cons ci ratio: 1.481619e+00	ci left: 4.694872e-07	ci right 2.784534e-06	k: 6	n:4690000
KS ci ratio: 6.457182e-03	ci left: 7.261995e-02	ci right 7.309060e-02	k: 341690	n:4690000
SEC14L1   4690000 perm   9489 sec   (494 perm/sec)   p_kst 7.285501e-02   p_cons 1.279318e-06   p_joint 3.198294e-06

Joint ci ratio: 9.799982e-01	ci left: 1.786253e-06	ci right 5.263871e-06	k: 15	n:4700000
Cons ci ratio: 1.481619e+00	ci left: 4.684883e-07	ci right 2.778609e-06	k: 6	n:4700000
KS ci ratio: 6.450396e-03	ci left: 7.261839e-02	ci right 7.308852e-02	k: 342410	n:4700000
SEC14L1   4700000 perm   9527 sec   (493 perm/sec)   p_kst 7.285319e-02   p_cons 1.276596e-06   p_joint 3.191489e-06

Joint ci ratio: 9.799982e-01	ci left: 1.782461e-06	ci right 5.252695e-06	k: 15	n:4710000
Cons ci ratio: 1.481619e+00	ci left: 4.674936e-07	ci right 2.772710e-06	k: 6	n:4710000
KS ci ratio: 6.443560e-03	ci left: 7.261831e-02	ci right 7.308795e-02	k: 343137	n:4710000
SEC14L1   4710000 perm   9565 sec   (492 perm/sec)   p_kst 7.285287e-02   p_cons 1.273885e-06   p_joint 3.184713e-06

Joint ci ratio: 9.799982e-01	ci left: 1.778685e-06	ci right 5.241566e-06	k: 15	n:4720000
Cons ci ratio: 1.481619e+00	ci left: 4.665032e-07	ci right 2.766836e-06	k: 6	n:4720000
KS ci ratio: 6.437009e-03	ci left: 7.261274e-02	ci right 7.308186e-02	k: 343838	n:4720000
SEC14L1   4720000 perm   9602 sec   (492 perm/sec)   p_kst 7.284703e-02   p_cons 1.271186e-06   p_joint 3.177966e-06

Joint ci ratio: 9.799982e-01	ci left: 1.774924e-06	ci right 5.230485e-06	k: 15	n:4730000
Cons ci ratio: 1.481619e+00	ci left: 4.655169e-07	ci right 2.760986e-06	k: 6	n:4730000
KS ci ratio: 6.429803e-03	ci left: 7.262133e-02	ci right 7.308998e-02	k: 344606	n:4730000
SEC14L1   4730000 perm   9639 sec   (491 perm/sec)   p_kst 7.285539e-02   p_cons 1.268499e-06   p_joint 3.171247e-06

Joint ci ratio: 9.799982e-01	ci left: 1.771180e-06	ci right 5.219450e-06	k: 15	n:4740000
Cons ci ratio: 1.481619e+00	ci left: 4.645348e-07	ci right 2.755161e-06	k: 6	n:4740000
KS ci ratio: 6.422702e-03	ci left: 7.262820e-02	ci right 7.309637e-02	k: 345366	n:4740000
SEC14L1   4740000 perm   9678 sec   (490 perm/sec)   p_kst 7.286203e-02   p_cons 1.265823e-06   p_joint 3.164557e-06

Joint ci ratio: 9.799982e-01	ci left: 1.767451e-06	ci right 5.208462e-06	k: 15	n:4750000
Cons ci ratio: 1.481619e+00	ci left: 4.635568e-07	ci right 2.749361e-06	k: 6	n:4750000
KS ci ratio: 6.415774e-03	ci left: 7.263189e-02	ci right 7.309958e-02	k: 346111	n:4750000
SEC14L1   4750000 perm   9716 sec   (489 perm/sec)   p_kst 7.286547e-02   p_cons 1.263158e-06   p_joint 3.157895e-06

Joint ci ratio: 9.799982e-01	ci left: 1.763738e-06	ci right 5.197520e-06	k: 15	n:4760000
Cons ci ratio: 1.481619e+00	ci left: 4.625830e-07	ci right 2.743585e-06	k: 6	n:4760000
KS ci ratio: 6.409027e-03	ci left: 7.263221e-02	ci right 7.309941e-02	k: 346840	n:4760000
SEC14L1   4760000 perm   9755 sec   (488 perm/sec)   p_kst 7.286555e-02   p_cons 1.260504e-06   p_joint 3.151261e-06

Joint ci ratio: 9.799983e-01	ci left: 1.760040e-06	ci right 5.186623e-06	k: 15	n:4770000
Cons ci ratio: 1.481619e+00	ci left: 4.616132e-07	ci right 2.737833e-06	k: 6	n:4770000
KS ci ratio: 6.402273e-03	ci left: 7.263315e-02	ci right 7.309986e-02	k: 347572	n:4770000
SEC14L1   4770000 perm   9793 sec   (487 perm/sec)   p_kst 7.286625e-02   p_cons 1.257862e-06   p_joint 3.144654e-06

Joint ci ratio: 9.799983e-01	ci left: 1.756358e-06	ci right 5.175773e-06	k: 15	n:4780000
Cons ci ratio: 1.481619e+00	ci left: 4.606475e-07	ci right 2.732106e-06	k: 6	n:4780000
KS ci ratio: 6.395569e-03	ci left: 7.263347e-02	ci right 7.309969e-02	k: 348301	n:4780000
SEC14L1   4780000 perm   9832 sec   (486 perm/sec)   p_kst 7.286632e-02   p_cons 1.255230e-06   p_joint 3.138075e-06

Joint ci ratio: 9.799983e-01	ci left: 1.752691e-06	ci right 5.164967e-06	k: 15	n:4790000
Cons ci ratio: 1.481619e+00	ci left: 4.596858e-07	ci right 2.726402e-06	k: 6	n:4790000
KS ci ratio: 6.388935e-03	ci left: 7.263274e-02	ci right 7.309847e-02	k: 349025	n:4790000
SEC14L1   4790000 perm   9870 sec   (485 perm/sec)   p_kst 7.286534e-02   p_cons 1.252610e-06   p_joint 3.131524e-06

Joint ci ratio: 9.799983e-01	ci left: 1.749040e-06	ci right 5.154207e-06	k: 15	n:4800000
Cons ci ratio: 1.481619e+00	ci left: 4.587281e-07	ci right 2.720722e-06	k: 6	n:4800000
KS ci ratio: 6.382175e-03	ci left: 7.263513e-02	ci right 7.310038e-02	k: 349764	n:4800000
SEC14L1   4800000 perm   9909 sec   (484 perm/sec)   p_kst 7.286750e-02   p_cons 1.250000e-06   p_joint 3.125000e-06

Joint ci ratio: 9.799983e-01	ci left: 1.745404e-06	ci right 5.143491e-06	k: 15	n:4810000
Cons ci ratio: 1.481620e+00	ci left: 4.577744e-07	ci right 2.715065e-06	k: 6	n:4810000
KS ci ratio: 6.375053e-03	ci left: 7.264561e-02	ci right 7.311041e-02	k: 350542	n:4810000
SEC14L1   4810000 perm   9947 sec   (484 perm/sec)   p_kst 7.287775e-02   p_cons 1.247401e-06   p_joint 3.118503e-06

Joint ci ratio: 9.799983e-01	ci left: 1.741782e-06	ci right 5.132820e-06	k: 15	n:4820000
Cons ci ratio: 1.481620e+00	ci left: 4.568247e-07	ci right 2.709432e-06	k: 6	n:4820000
KS ci ratio: 6.368552e-03	ci left: 7.264341e-02	ci right 7.310772e-02	k: 351259	n:4820000
SEC14L1   4820000 perm   9985 sec   (483 perm/sec)   p_kst 7.287531e-02   p_cons 1.244813e-06   p_joint 3.112033e-06

Joint ci ratio: 9.799983e-01	ci left: 1.738176e-06	ci right 5.122193e-06	k: 15	n:4830000
Cons ci ratio: 1.481620e+00	ci left: 4.558789e-07	ci right 2.703823e-06	k: 6	n:4830000
KS ci ratio: 6.361798e-03	ci left: 7.264701e-02	ci right 7.311085e-02	k: 352004	n:4830000
SEC14L1   4830000 perm   10024 sec   (482 perm/sec)   p_kst 7.287867e-02   p_cons 1.242236e-06   p_joint 3.105590e-06

Joint ci ratio: 9.799983e-01	ci left: 1.734585e-06	ci right 5.111610e-06	k: 15	n:4840000
Cons ci ratio: 1.481620e+00	ci left: 4.549370e-07	ci right 2.698236e-06	k: 6	n:4840000
KS ci ratio: 6.355414e-03	ci left: 7.264317e-02	ci right 7.310652e-02	k: 352713	n:4840000
SEC14L1   4840000 perm   10063 sec   (481 perm/sec)   p_kst 7.287459e-02   p_cons 1.239669e-06   p_joint 3.099174e-06

Joint ci ratio: 9.799983e-01	ci left: 1.731008e-06	ci right 5.101071e-06	k: 15	n:4850000
Cons ci ratio: 1.481620e+00	ci left: 4.539989e-07	ci right 2.692673e-06	k: 6	n:4850000
KS ci ratio: 6.348953e-03	ci left: 7.264140e-02	ci right 7.310426e-02	k: 353432	n:4850000
SEC14L1   4850000 perm   10102 sec   (480 perm/sec)   p_kst 7.287258e-02   p_cons 1.237113e-06   p_joint 3.092784e-06

Joint ci ratio: 9.799983e-01	ci left: 1.727447e-06	ci right 5.090575e-06	k: 15	n:4860000
Cons ci ratio: 1.481620e+00	ci left: 4.530648e-07	ci right 2.687133e-06	k: 6	n:4860000
KS ci ratio: 6.342773e-03	ci left: 7.263409e-02	ci right 7.309646e-02	k: 354124	n:4860000
SEC14L1   4860000 perm   10141 sec   (479 perm/sec)   p_kst 7.286502e-02   p_cons 1.234568e-06   p_joint 3.086420e-06

Joint ci ratio: 9.799983e-01	ci left: 1.723900e-06	ci right 5.080122e-06	k: 15	n:4870000
Cons ci ratio: 1.481620e+00	ci left: 4.521345e-07	ci right 2.681615e-06	k: 6	n:4870000
KS ci ratio: 6.336428e-03	ci left: 7.263071e-02	ci right 7.309259e-02	k: 354835	n:4870000
SEC14L1   4870000 perm   10180 sec   (478 perm/sec)   p_kst 7.286140e-02   p_cons 1.232033e-06   p_joint 3.080082e-06

Joint ci ratio: 9.799983e-01	ci left: 1.720367e-06	ci right 5.069712e-06	k: 15	n:4880000
Cons ci ratio: 1.481620e+00	ci left: 4.512080e-07	ci right 2.676120e-06	k: 6	n:4880000
KS ci ratio: 6.329765e-03	ci left: 7.263450e-02	ci right 7.309592e-02	k: 355581	n:4880000
SEC14L1   4880000 perm   10219 sec   (478 perm/sec)   p_kst 7.286496e-02   p_cons 1.229508e-06   p_joint 3.073770e-06

Joint ci ratio: 9.799983e-01	ci left: 1.716849e-06	ci right 5.059344e-06	k: 15	n:4890000
Cons ci ratio: 1.481620e+00	ci left: 4.502853e-07	ci right 2.670647e-06	k: 6	n:4890000
KS ci ratio: 6.323851e-03	ci left: 7.262276e-02	ci right 7.308367e-02	k: 356251	n:4890000
SEC14L1   4890000 perm   10258 sec   (477 perm/sec)   p_kst 7.285297e-02   p_cons 1.226994e-06   p_joint 3.067485e-06

Joint ci ratio: 9.799983e-01	ci left: 1.713345e-06	ci right 5.049019e-06	k: 15	n:4900000
Cons ci ratio: 1.481620e+00	ci left: 4.493663e-07	ci right 2.665197e-06	k: 6	n:4900000
KS ci ratio: 6.317572e-03	ci left: 7.261922e-02	ci right 7.307965e-02	k: 356961	n:4900000
SEC14L1   4900000 perm   10299 sec   (476 perm/sec)   p_kst 7.284918e-02   p_cons 1.224490e-06   p_joint 3.061224e-06

Joint ci ratio: 9.799983e-01	ci left: 1.709856e-06	ci right 5.038736e-06	k: 15	n:4910000
Cons ci ratio: 1.481620e+00	ci left: 4.484511e-07	ci right 2.659769e-06	k: 6	n:4910000
KS ci ratio: 6.310921e-03	ci left: 7.262403e-02	ci right 7.308400e-02	k: 357712	n:4910000
SEC14L1   4910000 perm   10338 sec   (475 perm/sec)   p_kst 7.285377e-02   p_cons 1.221996e-06   p_joint 3.054990e-06

Joint ci ratio: 9.799983e-01	ci left: 1.706380e-06	ci right 5.028495e-06	k: 15	n:4920000
Cons ci ratio: 1.481620e+00	ci left: 4.475396e-07	ci right 2.654363e-06	k: 6	n:4920000
KS ci ratio: 6.304348e-03	ci left: 7.262761e-02	ci right 7.308712e-02	k: 358457	n:4920000
SEC14L1   4920000 perm   10378 sec   (474 perm/sec)   p_kst 7.285711e-02   p_cons 1.219512e-06   p_joint 3.048780e-06

Joint ci ratio: 9.799983e-01	ci left: 1.702919e-06	ci right 5.018295e-06	k: 15	n:4930000
Cons ci ratio: 1.481620e+00	ci left: 4.466318e-07	ci right 2.648979e-06	k: 6	n:4930000
KS ci ratio: 6.297900e-03	ci left: 7.262894e-02	ci right 7.308799e-02	k: 359191	n:4930000
SEC14L1   4930000 perm   10418 sec   (473 perm/sec)   p_kst 7.285822e-02   p_cons 1.217039e-06   p_joint 3.042596e-06

Joint ci ratio: 9.799983e-01	ci left: 1.699472e-06	ci right 5.008137e-06	k: 15	n:4940000
Cons ci ratio: 1.481620e+00	ci left: 4.457277e-07	ci right 2.643616e-06	k: 6	n:4940000
KS ci ratio: 6.291575e-03	ci left: 7.262805e-02	ci right 7.308663e-02	k: 359914	n:4940000
SEC14L1   4940000 perm   10458 sec   (472 perm/sec)   p_kst 7.285709e-02   p_cons 1.214575e-06   p_joint 3.036437e-06

Joint ci ratio: 9.799983e-01	ci left: 1.696039e-06	ci right 4.998019e-06	k: 15	n:4950000
Cons ci ratio: 1.481620e+00	ci left: 4.448272e-07	ci right 2.638276e-06	k: 6	n:4950000
KS ci ratio: 6.285287e-03	ci left: 7.262675e-02	ci right 7.308486e-02	k: 360635	n:4950000
SEC14L1   4950000 perm   10498 sec   (472 perm/sec)   p_kst 7.285556e-02   p_cons 1.212121e-06   p_joint 3.030303e-06

Joint ci ratio: 9.507379e-01	ci left: 1.843828e-06	ci right 5.238502e-06	k: 16	n:4960000
Cons ci ratio: 1.481620e+00	ci left: 4.439304e-07	ci right 2.632957e-06	k: 6	n:4960000
KS ci ratio: 6.279178e-03	ci left: 7.262204e-02	ci right 7.307967e-02	k: 361339	n:4960000
SEC14L1   4960000 perm   10538 sec   (471 perm/sec)   p_kst 7.285060e-02   p_cons 1.209677e-06   p_joint 3.225806e-06

Joint ci ratio: 9.507379e-01	ci left: 1.840118e-06	ci right 5.227962e-06	k: 16	n:4970000
Cons ci ratio: 1.481620e+00	ci left: 4.430372e-07	ci right 2.627659e-06	k: 6	n:4970000
KS ci ratio: 6.272826e-03	ci left: 7.262297e-02	ci right 7.308015e-02	k: 362071	n:4970000
SEC14L1   4970000 perm   10579 sec   (470 perm/sec)   p_kst 7.285131e-02   p_cons 1.207243e-06   p_joint 3.219316e-06

Joint ci ratio: 9.507379e-01	ci left: 1.836423e-06	ci right 5.217464e-06	k: 16	n:4980000
Cons ci ratio: 1.481620e+00	ci left: 4.421476e-07	ci right 2.622382e-06	k: 6	n:4980000
KS ci ratio: 6.266613e-03	ci left: 7.262129e-02	ci right 7.307800e-02	k: 362790	n:4980000
SEC14L1   4980000 perm   10619 sec   (469 perm/sec)   p_kst 7.284940e-02   p_cons 1.204819e-06   p_joint 3.212851e-06

Joint ci ratio: 9.507379e-01	ci left: 1.832743e-06	ci right 5.207008e-06	k: 16	n:4990000
Cons ci ratio: 1.481620e+00	ci left: 4.412615e-07	ci right 2.617127e-06	k: 6	n:4990000
KS ci ratio: 6.260521e-03	ci left: 7.261742e-02	ci right 7.307366e-02	k: 363498	n:4990000
SEC14L1   4990000 perm   10659 sec   (468 perm/sec)   p_kst 7.284529e-02   p_cons 1.202405e-06   p_joint 3.206413e-06

Joint ci ratio: 9.239511e-01	ci left: 1.980627e-06	ci right 5.443724e-06	k: 17	n:5000000
Cons ci ratio: 1.481620e+00	ci left: 4.403790e-07	ci right 2.611893e-06	k: 6	n:5000000
KS ci ratio: 6.253715e-03	ci left: 7.262934e-02	ci right 7.308516e-02	k: 364285	n:5000000
SEC14L1   5000000 perm   10700 sec   (467 perm/sec)   p_kst 7.285700e-02   p_cons 1.200000e-06   p_joint 3.400000e-06

Outputting figure to mutsig2_images.part000000000153/SEC14L1.4_2228_5000000_0.072857_1.2e-06_3.4e-06.png
                gene_name: SEC14L1
               theta_stop: 1.5 
                    nperm: 5000000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.073 
                   p_cons: 1.20e-06 
      ci_cons_bounds_left: 4.40e-07 
     ci_cons_bounds_right: 2.61e-06 
                  p_joint: 3.40e-06 
     ci_joint_bounds_left: 1.98e-06 
    ci_joint_bounds_right: 5.44e-06 

Current progress: 49 percent done.
SEC14L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
Cons ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
KS ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
SEC14L5   10000 perm   2 sec   (5669 perm/sec)   p_kst 1.210000e-01   p_cons 8.011000e-01   p_joint 2.106000e-01

Joint ci ratio: 5.398102e-02	ci left: 2.029866e-01	ci right 2.142982e-01	k: 4172	n:20000
Cons ci ratio: 1.429348e-02	ci left: 7.842377e-01	ci right 7.955779e-01	k: 15799	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
SEC14L5   20000 perm   4 sec   (5074 perm/sec)   p_kst 1.178500e-01   p_cons 7.899500e-01   p_joint 2.086000e-01

Outputting figure to mutsig2_images.part000000000153/SEC14L5.4_2151_20000_0.11785_0.78995_0.2086.png
                gene_name: SEC14L5
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 51 percent done.
SCGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
Cons ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
SCGN   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.550000e-02   p_cons 4.542000e-01   p_joint 5.550000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 2.995741e-02	ci left: 4.542724e-01	ci right 4.681388e-01	k: 9224	n:20000
KS ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
SCGN   20000 perm   3 sec   (5734 perm/sec)   p_kst 1.515000e-02   p_cons 4.612000e-01   p_joint 2.260000e-02

Joint ci ratio: 1.184276e-01	ci left: 3.314310e-02	ci right 3.734752e-02	k: 1056	n:30000
Cons ci ratio: 2.526336e-02	ci left: 4.395650e-01	ci right 4.508456e-01	k: 13356	n:30000
KS ci ratio: 1.811615e-01	ci left: 1.397332e-02	ci right 1.678834e-02	k: 460	n:30000
SCGN   30000 perm   6 sec   (5448 perm/sec)   p_kst 1.533333e-02   p_cons 4.452000e-01   p_joint 3.520000e-02

Joint ci ratio: 1.328574e-01	ci left: 1.988322e-02	ci right 2.273686e-02	k: 851	n:40000
Cons ci ratio: 2.182155e-02	ci left: 4.416198e-01	ci right 4.513880e-01	k: 17860	n:40000
KS ci ratio: 1.607412e-01	ci left: 1.347140e-02	ci right 1.584982e-02	k: 585	n:40000
SCGN   40000 perm   8 sec   (5263 perm/sec)   p_kst 1.462500e-02   p_cons 4.465000e-01   p_joint 2.127500e-02

Joint ci ratio: 1.211173e-01	ci left: 1.927584e-02	ci right 2.178026e-02	k: 1025	n:50000
Cons ci ratio: 1.951006e-02	ci left: 4.423356e-01	ci right 4.510706e-01	k: 22335	n:50000
KS ci ratio: 1.454432e-01	ci left: 1.327762e-02	ci right 1.537932e-02	k: 715	n:50000
SCGN   50000 perm   10 sec   (5119 perm/sec)   p_kst 1.430000e-02   p_cons 4.467000e-01   p_joint 2.050000e-02

Joint ci ratio: 1.136271e-01	ci left: 1.834374e-02	ci right 2.056975e-02	k: 1166	n:60000
Cons ci ratio: 1.775632e-02	ci left: 4.442150e-01	ci right 4.521900e-01	k: 26892	n:60000
KS ci ratio: 1.322411e-01	ci left: 1.347809e-02	ci right 1.540263e-02	k: 865	n:60000
SCGN   60000 perm   12 sec   (4996 perm/sec)   p_kst 1.441667e-02   p_cons 4.482000e-01   p_joint 1.943333e-02

Joint ci ratio: 1.160329e-01	ci left: 1.511120e-02	ci right 1.698637e-02	k: 1122	n:70000
Cons ci ratio: 1.643211e-02	ci left: 4.447251e-01	ci right 4.521077e-01	k: 31389	n:70000
KS ci ratio: 1.235742e-01	ci left: 1.329502e-02	ci right 1.505988e-02	k: 991	n:70000
SCGN   70000 perm   14 sec   (4887 perm/sec)   p_kst 1.415714e-02   p_cons 4.484143e-01   p_joint 1.602857e-02

Joint ci ratio: 8.463864e-02	ci left: 2.500617e-02	ci right 2.722838e-02	k: 2088	n:80000
Cons ci ratio: 1.537132e-02	ci left: 4.449494e-01	ci right 4.518543e-01	k: 35872	n:80000
KS ci ratio: 1.156302e-01	ci left: 1.334297e-02	ci right 1.499254e-02	k: 1132	n:80000
SCGN   80000 perm   17 sec   (4787 perm/sec)   p_kst 1.415000e-02   p_cons 4.484000e-01   p_joint 2.610000e-02

Joint ci ratio: 8.873790e-02	ci left: 2.027966e-02	ci right 2.217360e-02	k: 1909	n:90000
Cons ci ratio: 1.449583e-02	ci left: 4.450249e-01	ci right 4.515340e-01	k: 40345	n:90000
KS ci ratio: 1.090010e-01	ci left: 1.339391e-02	ci right 1.494875e-02	k: 1274	n:90000
SCGN   90000 perm   19 sec   (4692 perm/sec)   p_kst 1.415556e-02   p_cons 4.482778e-01   p_joint 2.121111e-02

Joint ci ratio: 8.131809e-02	ci left: 2.178571e-02	ci right 2.364212e-02	k: 2270	n:100000
Cons ci ratio: 1.374775e-02	ci left: 4.453441e-01	ci right 4.515189e-01	k: 44843	n:100000
KS ci ratio: 1.038046e-01	ci left: 1.332964e-02	ci right 1.479874e-02	k: 1405	n:100000
SCGN   100000 perm   22 sec   (4602 perm/sec)   p_kst 1.405000e-02   p_cons 4.484300e-01   p_joint 2.270000e-02

Joint ci ratio: 8.252408e-02	ci left: 1.926986e-02	ci right 2.093739e-02	k: 2210	n:110000
Cons ci ratio: 1.311770e-02	ci left: 4.451217e-01	ci right 4.510083e-01	k: 49287	n:110000
KS ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
SCGN   110000 perm   24 sec   (4517 perm/sec)   p_kst 1.352727e-02   p_cons 4.480636e-01   p_joint 2.009091e-02

Joint ci ratio: 6.590971e-02	ci left: 2.768878e-02	ci right 2.958409e-02	k: 3435	n:120000
Cons ci ratio: 1.257718e-02	ci left: 4.445422e-01	ci right 4.501770e-01	k: 53683	n:120000
KS ci ratio: 9.679374e-02	ci left: 1.283027e-02	ci right 1.414340e-02	k: 1617	n:120000
SCGN   120000 perm   27 sec   (4437 perm/sec)   p_kst 1.347500e-02   p_cons 4.473583e-01   p_joint 2.862500e-02

Outputting figure to mutsig2_images.part000000000153/SCGN.3_875_120000_0.013475_0.44736_0.028625.png
                gene_name: SCGN
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 53 percent done.
SCN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
Cons ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
KS ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
SCN3B   10000 perm   1 sec   (6764 perm/sec)   p_kst 8.343000e-01   p_cons 2.952000e-01   p_joint 5.940000e-01

Outputting figure to mutsig2_images.part000000000153/SCN3B.3_668_10000_0.8343_0.2952_0.594.png
                gene_name: SCN3B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 55 percent done.
SCNN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
Cons ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
KS ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
SCNN1B   10000 perm   2 sec   (6204 perm/sec)   p_kst 2.982000e-01   p_cons 3.722000e-01   p_joint 3.550000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1B.3_1971_10000_0.2982_0.3722_0.355.png
                gene_name: SCNN1B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 57 percent done.
SCNN1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
SCNN1G   10000 perm   2 sec   (6203 perm/sec)   p_kst 1.617000e-01   p_cons 6.793000e-01   p_joint 3.026000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1G.3_1998_10000_0.1617_0.6793_0.3026.png
                gene_name: SCNN1G
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 59 percent done.
SCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
Cons ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
SCP2   10000 perm   2 sec   (6387 perm/sec)   p_kst 1.077000e-01   p_cons 1.639000e-01   p_joint 6.390000e-02

Joint ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
Cons ci ratio: 6.184988e-02	ci left: 1.620521e-01	ci right 1.724448e-01	k: 3344	n:20000
KS ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
SCP2   20000 perm   4 sec   (5657 perm/sec)   p_kst 1.070000e-01   p_cons 1.672000e-01   p_joint 6.475000e-02

Joint ci ratio: 6.901285e-02	ci left: 9.373909e-02	ci right 1.004725e-01	k: 2912	n:30000
Cons ci ratio: 5.027503e-02	ci left: 1.642469e-01	ci right 1.727507e-01	k: 5054	n:30000
KS ci ratio: 6.546129e-02	ci left: 1.032608e-01	ci right 1.102822e-01	k: 3202	n:30000
SCP2   30000 perm   6 sec   (5366 perm/sec)   p_kst 1.067333e-01   p_cons 1.684667e-01   p_joint 9.706667e-02

Outputting figure to mutsig2_images.part000000000153/SCP2.3_1732_30000_0.10673_0.16847_0.097067.png
                gene_name: SCP2
               theta_stop: 0.069 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 61 percent done.
SCRIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
Cons ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
KS ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
SCRIB   10000 perm   2 sec   (4924 perm/sec)   p_kst 6.364000e-01   p_cons 6.640000e-02   p_joint 2.591000e-01

Joint ci ratio: 5.387499e-02	ci left: 2.036301e-01	ci right 2.149546e-01	k: 4185	n:20000
Cons ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
KS ci ratio: 2.085346e-02	ci left: 6.318471e-01	ci right 6.452126e-01	k: 12771	n:20000
SCRIB   20000 perm   4 sec   (4455 perm/sec)   p_kst 6.385500e-01   p_cons 6.200000e-02   p_joint 2.092500e-01

Joint ci ratio: 3.743207e-02	ci left: 2.626627e-01	ci right 2.727157e-01	k: 8030	n:30000
Cons ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
KS ci ratio: 1.692819e-02	ci left: 6.357757e-01	ci right 6.466636e-01	k: 19237	n:30000
SCRIB   30000 perm   7 sec   (4279 perm/sec)   p_kst 6.412333e-01   p_cons 6.100000e-02   p_joint 2.676667e-01

Outputting figure to mutsig2_images.part000000000153/SCRIB.3_5116_30000_0.64123_0.061_0.26767.png
                gene_name: SCRIB
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 63 percent done.
SCUBE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
Cons ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
KS ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
SCUBE2   10000 perm   2 sec   (5474 perm/sec)   p_kst 5.173000e-01   p_cons 5.774000e-01   p_joint 7.848000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE2.3_3179_10000_0.5173_0.5774_0.7848.png
                gene_name: SCUBE2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 65 percent done.
SCUBE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
Cons ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
KS ci ratio: 1.444432e-02	ci left: 8.739813e-01	ci right 8.867962e-01	k: 8805	n:10000
SCUBE3   10000 perm   2 sec   (5496 perm/sec)   p_kst 8.805000e-01   p_cons 5.156000e-01   p_joint 9.358000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE3.3_3070_10000_0.8805_0.5156_0.9358.png
                gene_name: SCUBE3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 67 percent done.
SCYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
SCYL2   10000 perm   2 sec   (5772 perm/sec)   p_kst 5.447000e-01   p_cons 2.137000e-01   p_joint 5.888000e-01

Outputting figure to mutsig2_images.part000000000153/SCYL2.3_2858_10000_0.5447_0.2137_0.5888.png
                gene_name: SCYL2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 69 percent done.
SCYL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
Cons ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KS ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
SCYL3   10000 perm   2 sec   (6000 perm/sec)   p_kst 6.221000e-01   p_cons 1.142000e-01   p_joint 5.893000e-01

Joint ci ratio: 2.778866e-02	ci left: 4.917461e-01	ci right 5.056543e-01	k: 9974	n:20000
Cons ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
KS ci ratio: 2.145824e-02	ci left: 6.184986e-01	ci right 6.319650e-01	k: 12505	n:20000
SCYL3   20000 perm   4 sec   (5389 perm/sec)   p_kst 6.252500e-01   p_cons 1.265500e-01   p_joint 4.987000e-01

Outputting figure to mutsig2_images.part000000000153/SCYL3.3_2281_20000_0.62525_0.12655_0.4987.png
                gene_name: SCYL3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 71 percent done.
SDCCAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
Cons ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
SDCCAG1   10000 perm   2 sec   (5633 perm/sec)   p_kst 4.559000e-01   p_cons 1.918000e-01   p_joint 6.534000e-01

Outputting figure to mutsig2_images.part000000000153/SDCCAG1.3_3363_10000_0.4559_0.1918_0.6534.png
                gene_name: SDCCAG1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 73 percent done.
SCLY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
Cons ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
SCLY   10000 perm   1 sec   (6689 perm/sec)   p_kst 7.944000e-01   p_cons 7.200000e-02   p_joint 6.845000e-01

Joint ci ratio: 1.860036e-02	ci left: 6.830352e-01	ci right 6.959096e-01	k: 13790	n:20000
Cons ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
KS ci ratio: 1.429133e-02	ci left: 7.842881e-01	ci right 7.956274e-01	k: 15800	n:20000
SCLY   20000 perm   3 sec   (5960 perm/sec)   p_kst 7.900000e-01   p_cons 7.055000e-02   p_joint 6.895000e-01

Joint ci ratio: 2.267933e-02	ci left: 4.932591e-01	ci right 5.046078e-01	k: 14968	n:30000
Cons ci ratio: 8.219775e-02	ci left: 6.756291e-02	ci right 7.338727e-02	k: 2113	n:30000
KS ci ratio: 1.176599e-02	ci left: 7.825578e-01	ci right 7.918532e-01	k: 23617	n:30000
SCLY   30000 perm   5 sec   (5676 perm/sec)   p_kst 7.872333e-01   p_cons 7.043333e-02   p_joint 4.989333e-01

Outputting figure to mutsig2_images.part000000000153/SCLY.2_1386_30000_0.78723_0.070433_0.49893.png
                gene_name: SCLY
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 75 percent done.
SCNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
Cons ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
KS ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
SCNM1   10000 perm   1 sec   (7228 perm/sec)   p_kst 5.506000e-01   p_cons 7.210000e-01   p_joint 9.349000e-01

Outputting figure to mutsig2_images.part000000000153/SCNM1.2_721_10000_0.5506_0.721_0.9349.png
                gene_name: SCNM1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 76 percent done.
SCNN1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
Cons ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
SCNN1D   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.445000e-01   p_cons 2.725000e-01   p_joint 6.045000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1D.2_2175_10000_0.3445_0.2725_0.6045.png
                gene_name: SCNN1D
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 78 percent done.
SCRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
KS ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
SCRG1   10000 perm   1 sec   (7435 perm/sec)   p_kst 5.770000e-01   p_cons 3.382000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCRG1.2_305_10000_0.577_0.3382_1.png
                gene_name: SCRG1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
SCRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
Cons ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
KS ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
SCRN2   10000 perm   1 sec   (6701 perm/sec)   p_kst 8.263000e-01   p_cons 7.484000e-01   p_joint 8.427000e-01

Outputting figure to mutsig2_images.part000000000153/SCRN2.2_1324_10000_0.8263_0.7484_0.8427.png
                gene_name: SCRN2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 82 percent done.
SCYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
KS ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
SCYL1   10000 perm   2 sec   (6397 perm/sec)   p_kst 5.028000e-01   p_cons 1.880000e-02   p_joint 2.820000e-02

Joint ci ratio: 1.602456e-01	ci left: 2.671804e-02	ci right 3.142021e-02	k: 580	n:20000
Cons ci ratio: 2.027314e-01	ci left: 1.648770e-02	ci right 2.025418e-02	k: 366	n:20000
KS ci ratio: 2.754246e-02	ci left: 4.961956e-01	ci right 5.101035e-01	k: 10063	n:20000
SCYL1   20000 perm   4 sec   (5672 perm/sec)   p_kst 5.031500e-01   p_cons 1.830000e-02   p_joint 2.900000e-02

Joint ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
Cons ci ratio: 1.666913e-01	ci left: 1.658962e-02	ci right 1.963806e-02	k: 542	n:30000
KS ci ratio: 2.243422e-02	ci left: 4.986921e-01	ci right 5.100404e-01	k: 15131	n:30000
SCYL1   30000 perm   6 sec   (5395 perm/sec)   p_kst 5.043667e-01   p_cons 1.806667e-02   p_joint 2.810000e-02

Joint ci ratio: 2.335131e-02	ci left: 4.084683e-01	ci right 4.181443e-01	k: 16532	n:40000
Cons ci ratio: 1.181094e-01	ci left: 2.521499e-02	ci right 2.840421e-02	k: 1071	n:40000
KS ci ratio: 1.949957e-02	ci left: 4.976376e-01	ci right 5.074620e-01	k: 20102	n:40000
SCYL1   40000 perm   8 sec   (5220 perm/sec)   p_kst 5.025500e-01   p_cons 2.677500e-02   p_joint 4.133000e-01

Joint ci ratio: 2.299475e-02	ci left: 3.633317e-01	ci right 3.718037e-01	k: 18378	n:50000
Cons ci ratio: 1.061298e-01	ci left: 2.514866e-02	ci right 2.798666e-02	k: 1327	n:50000
KS ci ratio: 1.744840e-02	ci left: 4.979474e-01	ci right 5.067323e-01	k: 25117	n:50000
SCYL1   50000 perm   10 sec   (5078 perm/sec)   p_kst 5.023400e-01   p_cons 2.654000e-02   p_joint 3.675600e-01

Joint ci ratio: 2.727720e-02	ci left: 2.525613e-01	ci right 2.595623e-01	k: 15363	n:60000
Cons ci ratio: 9.674588e-02	ci left: 2.534334e-02	ci right 2.793605e-02	k: 1597	n:60000
KS ci ratio: 1.596351e-02	ci left: 4.972243e-01	ci right 5.052423e-01	k: 30074	n:60000
SCYL1   60000 perm   12 sec   (4953 perm/sec)   p_kst 5.012333e-01   p_cons 2.661667e-02   p_joint 2.560500e-01

Outputting figure to mutsig2_images.part000000000153/SCYL1.2_2499_60000_0.50123_0.026617_0.25605.png
                gene_name: SCYL1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 84 percent done.
SDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
SDC3   10000 perm   1 sec   (6775 perm/sec)   p_kst 2.800000e-02   p_cons 7.700000e-01   p_joint 3.241000e-01

Joint ci ratio: 3.501481e-02	ci left: 3.784477e-01	ci right 3.919857e-01	k: 7704	n:20000
Cons ci ratio: 1.506153e-02	ci left: 7.661717e-01	ci right 7.778491e-01	k: 15441	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
SDC3   20000 perm   3 sec   (5990 perm/sec)   p_kst 2.785000e-02   p_cons 7.720500e-01   p_joint 3.852000e-01

Joint ci ratio: 6.165772e-02	ci left: 1.150604e-01	ci right 1.224136e-01	k: 3561	n:30000
Cons ci ratio: 1.241466e-02	ci left: 7.638860e-01	ci right 7.734620e-01	k: 23061	n:30000
KS ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
SDC3   30000 perm   5 sec   (5689 perm/sec)   p_kst 2.756667e-02   p_cons 7.687000e-01   p_joint 1.187000e-01

Joint ci ratio: 2.039135e-02	ci left: 4.752930e-01	ci right 4.851099e-01	k: 19208	n:40000
Cons ci ratio: 1.074763e-02	ci left: 7.646616e-01	ci right 7.729493e-01	k: 30753	n:40000
KS ci ratio: 1.172137e-01	ci left: 2.560351e-02	ci right 2.881562e-02	k: 1087	n:40000
SDC3   40000 perm   7 sec   (5495 perm/sec)   p_kst 2.717500e-02   p_cons 7.688250e-01   p_joint 4.802000e-01

Joint ci ratio: 2.955071e-02	ci left: 2.564578e-01	ci right 2.641700e-01	k: 13015	n:50000
Cons ci ratio: 9.567132e-03	ci left: 7.668086e-01	ci right 7.742000e-01	k: 38526	n:50000
KS ci ratio: 1.049982e-01	ci left: 2.569425e-02	ci right 2.856100e-02	k: 1355	n:50000
SDC3   50000 perm   9 sec   (5339 perm/sec)   p_kst 2.710000e-02   p_cons 7.705200e-01   p_joint 2.603000e-01

Joint ci ratio: 4.980492e-02	ci left: 9.124779e-02	ci right 9.592494e-02	k: 5614	n:60000
Cons ci ratio: 8.714704e-03	ci left: 7.679012e-01	ci right 7.746392e-01	k: 46277	n:60000
KS ci ratio: 9.513716e-02	ci left: 2.620603e-02	ci right 2.883994e-02	k: 1650	n:60000
SDC3   60000 perm   12 sec   (5212 perm/sec)   p_kst 2.750000e-02   p_cons 7.712833e-01   p_joint 9.356667e-02

Outputting figure to mutsig2_images.part000000000153/SDC3.2_1349_60000_0.0275_0.77128_0.093567.png
                gene_name: SDC3
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.096 

Current progress: 86 percent done.
SDCCAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
Cons ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
KS ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
SDCCAG3   10000 perm   1 sec   (6870 perm/sec)   p_kst 4.505000e-01   p_cons 7.386000e-01   p_joint 7.455000e-01

Outputting figure to mutsig2_images.part000000000153/SDCCAG3.2_1348_10000_0.4505_0.7386_0.7455.png
                gene_name: SDCCAG3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
SDHAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
SDHAF2   10000 perm   1 sec   (7051 perm/sec)   p_kst 4.959000e-01   p_cons 6.864000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDHAF2.2_517_10000_0.4959_0.6864_1.png
                gene_name: SDHAF2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SDR42E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
KS ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
SDR42E1   10000 perm   1 sec   (6705 perm/sec)   p_kst 7.858000e-01   p_cons 7.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDR42E1.2_1190_10000_0.7858_0.7827_1.png
                gene_name: SDR42E1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SDR9C7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
KS ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
SDR9C7   10000 perm   1 sec   (7243 perm/sec)   p_kst 9.102000e-01   p_cons 7.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDR9C7.2_958_10000_0.9102_0.746_1.png
                gene_name: SDR9C7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
SDS   10000 perm   1 sec   (6891 perm/sec)   p_kst 7.105000e-01   p_cons 8.178000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDS.2_1015_10000_0.7105_0.8178_1.png
                gene_name: SDS
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SEC14L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
Cons ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
KS ci ratio: 1.328709e-02	ci left: 8.908764e-01	ci right 9.028912e-01	k: 8970	n:10000
SEC14L3   10000 perm   1 sec   (6747 perm/sec)   p_kst 8.970000e-01   p_cons 4.968000e-01   p_joint 9.899000e-01

Outputting figure to mutsig2_images.part000000000153/SEC14L3.2_1251_10000_0.897_0.4968_0.9899.png
                gene_name: SEC14L3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
SEC14L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.352295e-02	ci left: 8.874939e-01	ci right 8.996757e-01	k: 8937	n:10000
KS ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
SEC14L4   10000 perm   1 sec   (6729 perm/sec)   p_kst 9.911000e-01   p_cons 8.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SEC14L4.2_1275_10000_0.9911_0.8937_1.png
                gene_name: SEC14L4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000153
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 153 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 4422462: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000154> was used as the working directory.
Started at Wed Oct 24 18:07:06 2012
Results reported at Wed Oct 24 18:31:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000154.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000154.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 154  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000154.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1706.44 sec.
    Max Memory :      5364 MB
    Max Swap   :      7778 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
154
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 154
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 154: processing genes 13843 - 13932
Calculating significance of each gene.
Using projection method.
13843	SEC16A	9.998576e-01
13844	SEC16B	4.306314e-01
13845	SEC22A	2.572462e-01
13846	SEC22B	2.103505e-01
13847	SEC22C	1
13848	SEC23A	5.212194e-01
13849	SEC23B	9.596313e-01
In gene SEC23IP the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 3022    n = 1	mu =   9.71e-07
13850	SEC23IP	5.241168e-01
13851	SEC24A	9.209096e-01
13852	SEC24B	9.756032e-01
In gene SEC24C the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 3349    n = 1	mu =   7.03e-07
13853	SEC24C	7.823387e-01
13854	SEC24D	1.858464e-01
13855	SEC31A	5.733950e-01
13856	SEC31B	9.995059e-01
In gene SEC61A1 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1468    n = 1	mu =   5.35e-07
13857	SEC61A1	2.723318e-01
13858	SEC61A2	1.589520e-01
13859	SEC61B	1.577965e-01
13860	SEC61G	1.644583e-01
13861	SEC62	5.160014e-01
13862	SEC63	9.699106e-01
13863	SECISBP2	3.194906e-01
13864	SECISBP2L	9.749192e-01
13865	SECTM1	6.961336e-01
13866	SEH1L	8.460704e-01
13867	SEL1L	8.848181e-01
13868	SEL1L2	1
13869	SEL1L3	7.727792e-01
13870	SELE	2.506411e-01
13871	SELENBP1	8.654166e-01
13872	SELK	1
13873	SELL	2.644965e-02
13874	SELM	1
13875	SELO	9.382732e-01
13876	SELP	5.079247e-01
13877	SELPLG	2.966646e-01
13878	SELS	1
13879	SELT	2.435578e-01
13880	SELV	1
13881	SEMA3A	6.747288e-05
13882	SEMA3B	8.555992e-01
13883	SEMA3C	5.579230e-01
13884	SEMA3D	7.153727e-03
13885	SEMA3E	4.200795e-01
13886	SEMA3F	9.648873e-01
13887	SEMA3G	6.799792e-01
13888	SEMA4A	1
13889	SEMA4B	1
13890	SEMA4C	1
13891	SEMA4D	9.199885e-01
13892	SEMA4F	7.711835e-01
13893	SEMA4G	9.889500e-01
In gene SEMA5A the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 3309    n = 1	mu =   9.71e-07
13894	SEMA5A	2.952035e-01
13895	SEMA5B	9.974525e-01
13896	SEMA6A	9.725435e-01
13897	SEMA6B	9.703012e-01
13898	SEMA6C	1.999733e-01
13899	SEMA6D	3.657515e-01
13900	SEMA7A	7.601750e-01
13901	SEMG1	8.433090e-01
13902	SEMG2	4.849275e-01
13903	SENP1	1
13904	SENP2	5.699446e-01
13905	SENP3	7.931599e-01
13906	SENP5	7.395821e-01
13907	SENP6	8.852134e-01
13908	SENP7	7.918783e-01
13909	SENP8	1
13910	SEP15	5.894330e-01
13911	SEPHS1	7.705126e-01
13912	SEPHS2	1
13913	SEPN1	7.892399e-01
13914	SEPP1	1
13915	SEPSECS	6.200544e-01
13916	SEPT1	9.176593e-01
13917	SEPT10	1
13918	SEPT11	7.006886e-01
13919	SEPT12	3.974331e-01
13920	SEPT14	6.193256e-02
13921	SEPT2	7.723055e-01
13922	SEPT3	5.913742e-02
13923	SEPT4	9.367032e-02
13924	SEPT5	6.881200e-01
13925	SEPT6	1
13926	SEPT7	5.643747e-01
13927	SEPT8	1
13928	SEPT9	9.832067e-01
13929	SEPW1	1.497956e-01
13930	SEPX1	1
13931	SERAC1	8.600919e-01
13932	SERBP1	1
Done

Running MutSig 2:
Scatter job 154: processing genes 13843 - 13932
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SEMA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
Cons ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
KS ci ratio: 3.791403e-02	ci left: 5.067519e-01	ci right 5.264384e-01	k: 5166	n:10000
SEMA5A   10000 perm   3 sec   (3161 perm/sec)   p_kst 5.166000e-01   p_cons 8.640000e-02   p_joint 1.946000e-01

Joint ci ratio: 4.700057e-02	ci left: 2.519467e-01	ci right 2.641237e-01	k: 5160	n:20000
Cons ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
KS ci ratio: 2.660794e-02	ci left: 5.134487e-01	ci right 5.273454e-01	k: 10408	n:20000
SEMA5A   20000 perm   10 sec   (2016 perm/sec)   p_kst 5.204000e-01   p_cons 8.335000e-02   p_joint 2.580000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5A.24_3309_20000_0.5204_0.08335_0.258.png
                gene_name: SEMA5A
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 2 percent done.
SEMA6D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
Cons ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
KS ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
SEMA6D   10000 perm   3 sec   (3909 perm/sec)   p_kst 3.817000e-01   p_cons 5.783000e-01   p_joint 5.009000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6D.21_3337_10000_0.3817_0.5783_0.5009.png
                gene_name: SEMA6D
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 3 percent done.
SEMA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 8.144362e-03	ci left: 9.546142e-01	ci right 9.625159e-01	k: 9587	n:10000
SEMA3D   10000 perm   2 sec   (4030 perm/sec)   p_kst 9.587000e-01   p_cons 1.961000e-01   p_joint 4.409000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3D.20_2402_10000_0.9587_0.1961_0.4409.png
                gene_name: SEMA3D
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 5 percent done.
SEMA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
Cons ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
KS ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
SEMA3A   10000 perm   2 sec   (4270 perm/sec)   p_kst 5.718000e-01   p_cons 1.452000e-01   p_joint 3.504000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3A.19_2384_10000_0.5718_0.1452_0.3504.png
                gene_name: SEMA3A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 6 percent done.
SELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
SELP   10000 perm   2 sec   (4892 perm/sec)   p_kst 7.705000e-01   p_cons 9.200000e-02   p_joint 2.042000e-01

Joint ci ratio: 3.993759e-02	ci left: 3.185593e-01	ci right 3.315916e-01	k: 6501	n:20000
Cons ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
KS ci ratio: 1.452788e-02	ci left: 7.787354e-01	ci right 7.901817e-01	k: 15690	n:20000
SELP   20000 perm   5 sec   (4391 perm/sec)   p_kst 7.845000e-01   p_cons 9.325000e-02   p_joint 3.250500e-01

Outputting figure to mutsig2_images.part000000000154/SELP.14_2557_20000_0.7845_0.09325_0.32505.png
                gene_name: SELP
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 8 percent done.
SEMA6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
Cons ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
SEMA6A   10000 perm   2 sec   (4409 perm/sec)   p_kst 5.935000e-01   p_cons 2.513000e-01   p_joint 5.301000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6A.10_3165_10000_0.5935_0.2513_0.5301.png
                gene_name: SEMA6A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 10 percent done.
SEMA5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
SEMA5B   10000 perm   2 sec   (4398 perm/sec)   p_kst 7.231000e-01   p_cons 2.103000e-01   p_joint 5.157000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5B.9_3544_10000_0.7231_0.2103_0.5157.png
                gene_name: SEMA5B
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 11 percent done.
SEMA6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
Cons ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
SEMA6C   10000 perm   2 sec   (4383 perm/sec)   p_kst 5.150000e-02   p_cons 5.948000e-01   p_joint 1.326000e-01

Joint ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
Cons ci ratio: 2.268280e-02	ci left: 5.920684e-01	ci right 6.057028e-01	k: 11978	n:20000
KS ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
SEMA6C   20000 perm   5 sec   (3991 perm/sec)   p_kst 5.435000e-02   p_cons 5.989000e-01   p_joint 9.450000e-02

Joint ci ratio: 7.094426e-02	ci left: 8.908036e-02	ci right 9.566549e-02	k: 2770	n:30000
Cons ci ratio: 1.863920e-02	ci left: 5.902546e-01	ci right 6.013935e-01	k: 17875	n:30000
KS ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
SEMA6C   30000 perm   8 sec   (3821 perm/sec)   p_kst 5.553333e-02   p_cons 5.958333e-01   p_joint 9.233333e-02

Outputting figure to mutsig2_images.part000000000154/SEMA6C.9_2961_30000_0.055533_0.59583_0.092333.png
                gene_name: SEMA6C
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 13 percent done.
SEC31A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 9.038022e-03	ci left: 9.451295e-01	ci right 9.538063e-01	k: 9496	n:10000
SEC31A   10000 perm   2 sec   (4377 perm/sec)   p_kst 9.496000e-01   p_cons 4.703000e-01   p_joint 9.390000e-01

Outputting figure to mutsig2_images.part000000000154/SEC31A.8_3767_10000_0.9496_0.4703_0.939.png
                gene_name: SEC31A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 14 percent done.
SECISBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
SECISBP2   10000 perm   2 sec   (4578 perm/sec)   p_kst 2.104000e-01   p_cons 3.360000e-02   p_joint 6.480000e-02

Joint ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 5.368043e-02	ci left: 2.048181e-01	ci right 2.161662e-01	k: 4209	n:20000
SECISBP2   20000 perm   5 sec   (4142 perm/sec)   p_kst 2.104500e-01   p_cons 3.450000e-02   p_joint 8.750000e-02

Joint ci ratio: 6.297923e-02	ci left: 1.107532e-01	ci right 1.179883e-01	k: 3430	n:30000
Cons ci ratio: 1.205723e-01	ci left: 3.197780e-02	ci right 3.611308e-02	k: 1020	n:30000
KS ci ratio: 4.355502e-02	ci left: 2.079484e-01	ci right 2.172406e-01	k: 6377	n:30000
SECISBP2   30000 perm   8 sec   (3967 perm/sec)   p_kst 2.125667e-01   p_cons 3.400000e-02   p_joint 1.143333e-01

Joint ci ratio: 5.693540e-02	ci left: 1.029254e-01	ci right 1.089820e-01	k: 4237	n:40000
Cons ci ratio: 1.039588e-01	ci left: 3.253782e-02	ci right 3.613020e-02	k: 1372	n:40000
KS ci ratio: 3.805249e-02	ci left: 2.056696e-01	ci right 2.136726e-01	k: 8386	n:40000
SECISBP2   40000 perm   10 sec   (3861 perm/sec)   p_kst 2.096500e-01   p_cons 3.430000e-02   p_joint 1.059250e-01

Joint ci ratio: 5.314277e-02	ci left: 9.552593e-02	ci right 1.007608e-01	k: 4906	n:50000
Cons ci ratio: 9.218717e-02	ci left: 3.328884e-02	ci right 3.652545e-02	k: 1744	n:50000
KS ci ratio: 3.250950e-02	ci left: 2.216043e-01	ci right 2.289476e-01	k: 11263	n:50000
SECISBP2   50000 perm   13 sec   (3779 perm/sec)   p_kst 2.252600e-01   p_cons 3.488000e-02   p_joint 9.812000e-02

Outputting figure to mutsig2_images.part000000000154/SECISBP2.8_2633_50000_0.22526_0.03488_0.09812.png
                gene_name: SECISBP2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 16 percent done.
SENP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
Cons ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
KS ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
SENP7   10000 perm   2 sec   (4533 perm/sec)   p_kst 7.299000e-01   p_cons 6.195000e-01   p_joint 8.968000e-01

Outputting figure to mutsig2_images.part000000000154/SENP7.8_3249_10000_0.7299_0.6195_0.8968.png
                gene_name: SENP7
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 17 percent done.
SEC24D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
Cons ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
KS ci ratio: 3.813473e-02	ci left: 5.038511e-01	ci right 5.235409e-01	k: 5137	n:10000
SEC24D   10000 perm   2 sec   (4380 perm/sec)   p_kst 5.137000e-01   p_cons 3.834000e-01   p_joint 6.518000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24D.7_3187_10000_0.5137_0.3834_0.6518.png
                gene_name: SEC24D
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 19 percent done.
SEC31B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.430079e-02	ci left: 5.565186e-01	ci right 5.760428e-01	k: 5663	n:10000
Cons ci ratio: 1.202889e-02	ci left: 9.083336e-01	ci right 9.194239e-01	k: 9140	n:10000
KS ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
SEC31B   10000 perm   2 sec   (4324 perm/sec)   p_kst 3.421000e-01   p_cons 9.140000e-01   p_joint 5.663000e-01

Outputting figure to mutsig2_images.part000000000154/SEC31B.7_3640_10000_0.3421_0.914_0.5663.png
                gene_name: SEC31B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 21 percent done.
SEC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
SEC63   10000 perm   2 sec   (4938 perm/sec)   p_kst 1.410000e-02   p_cons 8.382000e-01   p_joint 7.820000e-02

Joint ci ratio: 1.060452e-01	ci left: 6.054901e-02	ci right 6.737843e-02	k: 1278	n:20000
Cons ci ratio: 1.217890e-02	ci left: 8.330221e-01	ci right 8.432794e-01	k: 16764	n:20000
KS ci ratio: 2.265363e-01	ci left: 1.307791e-02	ci right 1.646531e-02	k: 294	n:20000
SEC63   20000 perm   5 sec   (4412 perm/sec)   p_kst 1.470000e-02   p_cons 8.382000e-01   p_joint 6.390000e-02

Joint ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
Cons ci ratio: 9.952417e-03	ci left: 8.337476e-01	ci right 8.421201e-01	k: 25139	n:30000
KS ci ratio: 1.827789e-01	ci left: 1.371864e-02	ci right 1.650975e-02	k: 452	n:30000
SEC63   30000 perm   7 sec   (4208 perm/sec)   p_kst 1.506667e-02   p_cons 8.379667e-01   p_joint 4.340000e-02

Joint ci ratio: 8.987397e-02	ci left: 4.335598e-02	ci right 4.746035e-02	k: 1815	n:40000
Cons ci ratio: 8.692385e-03	ci left: 8.319814e-01	ci right 8.392698e-01	k: 33426	n:40000
KS ci ratio: 1.553160e-01	ci left: 1.445643e-02	ci right 1.691461e-02	k: 626	n:40000
SEC63   40000 perm   10 sec   (4085 perm/sec)   p_kst 1.565000e-02   p_cons 8.356500e-01   p_joint 4.537500e-02

Joint ci ratio: 9.577098e-02	ci left: 3.086522e-02	ci right 3.398937e-02	k: 1620	n:50000
Cons ci ratio: 7.739831e-03	ci left: 8.336119e-01	ci right 8.401089e-01	k: 41844	n:50000
KS ci ratio: 1.386275e-01	ci left: 1.464788e-02	ci right 1.684887e-02	k: 786	n:50000
SEC63   50000 perm   13 sec   (3983 perm/sec)   p_kst 1.572000e-02   p_cons 8.368800e-01   p_joint 3.240000e-02

Joint ci ratio: 7.276853e-02	ci left: 4.445210e-02	ci right 4.782531e-02	k: 2767	n:60000
Cons ci ratio: 7.080447e-03	ci left: 8.333148e-01	ci right 8.392526e-01	k: 50178	n:60000
KS ci ratio: 1.293177e-01	ci left: 1.410711e-02	ci right 1.607353e-02	k: 904	n:60000
SEC63   60000 perm   15 sec   (3891 perm/sec)   p_kst 1.506667e-02   p_cons 8.363000e-01   p_joint 4.611667e-02

Joint ci ratio: 6.438852e-02	ci left: 4.866428e-02	ci right 5.191598e-02	k: 3519	n:70000
Cons ci ratio: 6.554863e-03	ci left: 8.335523e-01	ci right 8.390483e-01	k: 58542	n:70000
KS ci ratio: 1.197731e-01	ci left: 1.416800e-02	ci right 1.598681e-02	k: 1054	n:70000
SEC63   70000 perm   18 sec   (3811 perm/sec)   p_kst 1.505714e-02   p_cons 8.363143e-01   p_joint 5.027143e-02

Joint ci ratio: 6.469748e-02	ci left: 4.245372e-02	ci right 4.530447e-02	k: 3509	n:80000
Cons ci ratio: 6.137140e-03	ci left: 8.334786e-01	ci right 8.386220e-01	k: 66885	n:80000
KS ci ratio: 1.127380e-01	ci left: 1.404754e-02	ci right 1.573791e-02	k: 1190	n:80000
SEC63   80000 perm   21 sec   (3745 perm/sec)   p_kst 1.487500e-02   p_cons 8.360625e-01   p_joint 4.386250e-02

Joint ci ratio: 6.907798e-02	ci left: 3.334987e-02	ci right 3.574692e-02	k: 3108	n:90000
Cons ci ratio: 5.781834e-03	ci left: 8.338328e-01	ci right 8.386789e-01	k: 75264	n:90000
KS ci ratio: 1.056075e-01	ci left: 1.428091e-02	ci right 1.588390e-02	k: 1356	n:90000
SEC63   90000 perm   24 sec   (3679 perm/sec)   p_kst 1.506667e-02   p_cons 8.362667e-01   p_joint 3.453333e-02

Joint ci ratio: 6.573490e-02	ci left: 3.321003e-02	ci right 3.547709e-02	k: 3433	n:100000
Cons ci ratio: 5.492065e-03	ci left: 8.336099e-01	ci right 8.382106e-01	k: 83592	n:100000
KS ci ratio: 1.002481e-01	ci left: 1.430448e-02	ci right 1.582384e-02	k: 1505	n:100000
SEC63   100000 perm   28 sec   (3621 perm/sec)   p_kst 1.505000e-02   p_cons 8.359200e-01   p_joint 3.433000e-02

Joint ci ratio: 6.494841e-02	ci left: 3.101247e-02	ci right 3.310320e-02	k: 3525	n:110000
Cons ci ratio: 5.229913e-03	ci left: 8.340635e-01	ci right 8.384460e-01	k: 91989	n:110000
KS ci ratio: 9.504839e-02	ci left: 1.450300e-02	ci right 1.595909e-02	k: 1674	n:110000
SEC63   110000 perm   31 sec   (3557 perm/sec)   p_kst 1.521818e-02   p_cons 8.362636e-01   p_joint 3.204545e-02

Outputting figure to mutsig2_images.part000000000154/SEC63.7_2367_110000_0.015218_0.83626_0.032045.png
                gene_name: SEC63
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 22 percent done.
SEMA7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
SEMA7A   10000 perm   2 sec   (5096 perm/sec)   p_kst 3.153000e-01   p_cons 5.621000e-01   p_joint 4.071000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA7A.7_2057_10000_0.3153_0.5621_0.4071.png
                gene_name: SEMA7A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 24 percent done.
SEC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
SEC16B   10000 perm   2 sec   (4790 perm/sec)   p_kst 8.328000e-01   p_cons 5.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC16B.6_3283_10000_0.8328_0.5794_1.png
                gene_name: SEC16B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
SEC24A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.264985e-02	ci left: 7.410878e-01	ci right 7.581666e-01	k: 7497	n:10000
KS ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
SEC24A   10000 perm   2 sec   (4625 perm/sec)   p_kst 6.924000e-01   p_cons 7.497000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC24A.6_3374_10000_0.6924_0.7497_1.png
                gene_name: SEC24A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SEC24C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
SEC24C   10000 perm   2 sec   (4518 perm/sec)   p_kst 9.350000e-02   p_cons 2.108000e-01   p_joint 1.725000e-01

Joint ci ratio: 7.057092e-02	ci left: 1.289134e-01	ci right 1.383934e-01	k: 2672	n:20000
Cons ci ratio: 5.364816e-02	ci left: 2.050161e-01	ci right 2.163682e-01	k: 4213	n:20000
KS ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
SEC24C   20000 perm   5 sec   (4093 perm/sec)   p_kst 9.810000e-02   p_cons 2.106500e-01   p_joint 1.336000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24C.6_3373_20000_0.0981_0.21065_0.1336.png
                gene_name: SEC24C
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
SELE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
KS ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
SELE   10000 perm   2 sec   (5014 perm/sec)   p_kst 5.300000e-03   p_cons 8.364000e-01   p_joint 4.350000e-02

Joint ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
Cons ci ratio: 1.239148e-02	ci left: 8.282131e-01	ci right 8.385898e-01	k: 16669	n:20000
KS ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
SELE   20000 perm   4 sec   (4543 perm/sec)   p_kst 5.750000e-03   p_cons 8.334500e-01   p_joint 1.890000e-02

Joint ci ratio: 1.803684e-01	ci left: 1.410070e-02	ci right 1.692759e-02	k: 464	n:30000
Cons ci ratio: 1.033350e-02	ci left: 8.231764e-01	ci right 8.317601e-01	k: 24825	n:30000
KS ci ratio: 2.946082e-01	ci left: 5.003063e-03	ci right 6.761370e-03	k: 175	n:30000
SELE   30000 perm   7 sec   (4367 perm/sec)   p_kst 5.833333e-03   p_cons 8.275000e-01   p_joint 1.546667e-02

Joint ci ratio: 1.354803e-01	ci left: 1.910956e-02	ci right 2.191066e-02	k: 819	n:40000
Cons ci ratio: 8.972512e-03	ci left: 8.230049e-01	ci right 8.304476e-01	k: 33070	n:40000
KS ci ratio: 2.528019e-01	ci left: 5.219877e-03	ci right 6.753176e-03	k: 238	n:40000
SELE   40000 perm   9 sec   (4251 perm/sec)   p_kst 5.950000e-03   p_cons 8.267500e-01   p_joint 2.047500e-02

Joint ci ratio: 1.403589e-01	ci left: 1.428095e-02	ci right 1.645584e-02	k: 767	n:50000
Cons ci ratio: 8.025508e-03	ci left: 8.233937e-01	ci right 8.300484e-01	k: 41337	n:50000
KS ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
SELE   50000 perm   12 sec   (4158 perm/sec)   p_kst 6.180000e-03   p_cons 8.267400e-01   p_joint 1.534000e-02

Joint ci ratio: 1.108499e-01	ci left: 1.928378e-02	ci right 2.156294e-02	k: 1224	n:60000
Cons ci ratio: 7.352387e-03	ci left: 8.226572e-01	ci right 8.287446e-01	k: 49543	n:60000
KS ci ratio: 2.083212e-01	ci left: 5.255462e-03	ci right 6.493069e-03	k: 351	n:60000
SELE   60000 perm   15 sec   (4061 perm/sec)   p_kst 5.850000e-03   p_cons 8.257167e-01   p_joint 2.040000e-02

Joint ci ratio: 1.086900e-01	ci left: 1.725042e-02	ci right 1.924694e-02	k: 1276	n:70000
Cons ci ratio: 6.958900e-03	ci left: 8.164005e-01	ci right 8.221158e-01	k: 57349	n:70000
KS ci ratio: 1.944623e-01	ci left: 5.210101e-03	ci right 6.345741e-03	k: 403	n:70000
SELE   70000 perm   18 sec   (3980 perm/sec)   p_kst 5.757143e-03   p_cons 8.192714e-01   p_joint 1.822857e-02

Joint ci ratio: 1.116020e-01	ci left: 1.433924e-02	ci right 1.604618e-02	k: 1214	n:80000
Cons ci ratio: 6.504148e-03	ci left: 8.168296e-01	ci right 8.221722e-01	k: 65561	n:80000
KS ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
SELE   80000 perm   20 sec   (3905 perm/sec)   p_kst 5.700000e-03   p_cons 8.195125e-01   p_joint 1.517500e-02

Joint ci ratio: 9.962603e-02	ci left: 1.606793e-02	ci right 1.776341e-02	k: 1521	n:90000
Cons ci ratio: 6.124591e-03	ci left: 8.173513e-01	ci right 8.223836e-01	k: 73789	n:90000
KS ci ratio: 1.717376e-01	ci left: 5.261132e-03	ci right 6.260018e-03	k: 517	n:90000
SELE   90000 perm   23 sec   (3831 perm/sec)   p_kst 5.744444e-03   p_cons 8.198778e-01   p_joint 1.690000e-02

Joint ci ratio: 9.921642e-02	ci left: 1.460686e-02	ci right 1.614144e-02	k: 1536	n:100000
Cons ci ratio: 5.551016e-03	ci left: 8.306435e-01	ci right 8.352772e-01	k: 83297	n:100000
KS ci ratio: 1.600895e-01	ci left: 5.482713e-03	ci right 6.446281e-03	k: 595	n:100000
SELE   100000 perm   27 sec   (3763 perm/sec)   p_kst 5.950000e-03   p_cons 8.329700e-01   p_joint 1.536000e-02

Joint ci ratio: 9.153246e-02	ci left: 1.564878e-02	ci right 1.715869e-02	k: 1803	n:110000
Cons ci ratio: 5.293322e-03	ci left: 8.307186e-01	ci right 8.351366e-01	k: 91623	n:110000
KS ci ratio: 1.520109e-01	ci left: 5.552145e-03	ci right 6.474193e-03	k: 660	n:110000
SELE   110000 perm   30 sec   (3696 perm/sec)   p_kst 6.000000e-03   p_cons 8.329364e-01   p_joint 1.639091e-02

Joint ci ratio: 9.275121e-02	ci left: 1.398594e-02	ci right 1.535433e-02	k: 1759	n:120000
Cons ci ratio: 5.066201e-03	ci left: 8.309110e-01	ci right 8.351395e-01	k: 99964	n:120000
KS ci ratio: 1.422133e-01	ci left: 5.844053e-03	ci right 6.746723e-03	k: 754	n:120000
SELE   120000 perm   33 sec   (3636 perm/sec)   p_kst 6.283333e-03   p_cons 8.330333e-01   p_joint 1.465833e-02

Joint ci ratio: 8.924720e-02	ci left: 1.397003e-02	ci right 1.528252e-02	k: 1900	n:130000
Cons ci ratio: 4.858739e-03	ci left: 8.314946e-01	ci right 8.355521e-01	k: 108359	n:130000
KS ci ratio: 1.367956e-01	ci left: 5.847367e-03	ci right 6.713339e-03	k: 815	n:130000
SELE   130000 perm   36 sec   (3576 perm/sec)   p_kst 6.269231e-03   p_cons 8.335308e-01   p_joint 1.461538e-02

Joint ci ratio: 8.861180e-02	ci left: 1.317446e-02	ci right 1.440294e-02	k: 1929	n:140000
Cons ci ratio: 4.670219e-03	ci left: 8.322701e-01	ci right 8.361732e-01	k: 116792	n:140000
KS ci ratio: 1.321049e-01	ci left: 5.836951e-03	ci right 6.669412e-03	k: 874	n:140000
SELE   140000 perm   40 sec   (3517 perm/sec)   p_kst 6.242857e-03   p_cons 8.342286e-01   p_joint 1.377857e-02

Joint ci ratio: 8.052364e-02	ci left: 1.492665e-02	ci right 1.618551e-02	k: 2332	n:150000
Cons ci ratio: 4.507647e-03	ci left: 8.325961e-01	ci right 8.363643e-01	k: 125173	n:150000
KS ci ratio: 1.279349e-01	ci left: 5.821909e-03	ci right 6.624024e-03	k: 932	n:150000
SELE   150000 perm   43 sec   (3464 perm/sec)   p_kst 6.213333e-03   p_cons 8.344867e-01   p_joint 1.554667e-02

Joint ci ratio: 7.116110e-02	ci left: 1.794973e-02	ci right 1.928029e-02	k: 2977	n:160000
Cons ci ratio: 4.361138e-03	ci left: 8.328707e-01	ci right 8.365171e-01	k: 133552	n:160000
KS ci ratio: 1.238850e-01	ci left: 5.833338e-03	ci right 6.609718e-03	k: 994	n:160000
SELE   160000 perm   47 sec   (3413 perm/sec)   p_kst 6.212500e-03   p_cons 8.347000e-01   p_joint 1.860625e-02

Joint ci ratio: 6.984056e-02	ci left: 1.755829e-02	ci right 1.883469e-02	k: 3092	n:170000
Cons ci ratio: 4.229932e-03	ci left: 8.329906e-01	ci right 8.365274e-01	k: 141910	n:170000
KS ci ratio: 1.197417e-01	ci left: 5.889430e-03	ci right 6.645204e-03	k: 1064	n:170000
SELE   170000 perm   51 sec   (3361 perm/sec)   p_kst 6.258824e-03   p_cons 8.347647e-01   p_joint 1.818824e-02

Joint ci ratio: 7.027052e-02	ci left: 1.639690e-02	ci right 1.759651e-02	k: 3058	n:180000
Cons ci ratio: 4.109234e-03	ci left: 8.331432e-01	ci right 8.365793e-01	k: 150276	n:180000
KS ci ratio: 1.163497e-01	ci left: 5.901907e-03	ci right 6.636353e-03	k: 1127	n:180000
SELE   180000 perm   54 sec   (3312 perm/sec)   p_kst 6.261111e-03   p_cons 8.348667e-01   p_joint 1.698889e-02

Joint ci ratio: 7.252735e-02	ci left: 1.459261e-02	ci right 1.569594e-02	k: 2876	n:190000
Cons ci ratio: 3.990825e-03	ci left: 8.337989e-01	ci right 8.371383e-01	k: 158740	n:190000
KS ci ratio: 1.129446e-01	ci left: 5.944032e-03	ci right 6.660630e-03	k: 1196	n:190000
SELE   190000 perm   58 sec   (3264 perm/sec)   p_kst 6.294737e-03   p_cons 8.354737e-01   p_joint 1.513684e-02

Joint ci ratio: 7.079093e-02	ci left: 1.456516e-02	ci right 1.563896e-02	k: 3019	n:200000
Cons ci ratio: 3.892727e-03	ci left: 8.336320e-01	ci right 8.368883e-01	k: 167053	n:200000
KS ci ratio: 1.097783e-01	ci left: 5.987089e-03	ci right 6.687335e-03	k: 1266	n:200000
SELE   200000 perm   62 sec   (3216 perm/sec)   p_kst 6.330000e-03   p_cons 8.352650e-01   p_joint 1.509500e-02

Joint ci ratio: 7.256766e-02	ci left: 1.320717e-02	ci right 1.420632e-02	k: 2877	n:210000
Cons ci ratio: 3.798888e-03	ci left: 8.336732e-01	ci right 8.368509e-01	k: 175406	n:210000
KS ci ratio: 1.072687e-01	ci left: 5.979948e-03	ci right 6.662358e-03	k: 1326	n:210000
SELE   210000 perm   66 sec   (3172 perm/sec)   p_kst 6.314286e-03   p_cons 8.352667e-01   p_joint 1.370000e-02

Joint ci ratio: 7.165045e-02	ci left: 1.294154e-02	ci right 1.390770e-02	k: 2952	n:220000
Cons ci ratio: 3.708582e-03	ci left: 8.339305e-01	ci right 8.370334e-01	k: 183807	n:220000
KS ci ratio: 1.045451e-01	ci left: 6.017892e-03	ci right 6.686124e-03	k: 1396	n:220000
SELE   220000 perm   70 sec   (3128 perm/sec)   p_kst 6.345455e-03   p_cons 8.354864e-01   p_joint 1.341818e-02

Joint ci ratio: 6.674849e-02	ci left: 1.428052e-02	ci right 1.527089e-02	k: 3397	n:230000
Cons ci ratio: 3.708611e-03	ci left: 8.277386e-01	ci right 8.308183e-01	k: 190735	n:230000
KS ci ratio: 1.027260e-01	ci left: 5.967993e-03	ci right 6.618456e-03	k: 1446	n:230000
SELE   230000 perm   74 sec   (3089 perm/sec)   p_kst 6.286957e-03   p_cons 8.292826e-01   p_joint 1.476957e-02

Joint ci ratio: 6.660055e-02	ci left: 1.375503e-02	ci right 1.470675e-02	k: 3414	n:240000
Cons ci ratio: 3.631799e-03	ci left: 8.276716e-01	ci right 8.306871e-01	k: 199004	n:240000
KS ci ratio: 1.008970e-01	ci left: 5.934531e-03	ci right 6.569148e-03	k: 1499	n:240000
SELE   240000 perm   79 sec   (3050 perm/sec)   p_kst 6.245833e-03   p_cons 8.291833e-01   p_joint 1.422500e-02

Joint ci ratio: 6.231918e-02	ci left: 1.509422e-02	ci right 1.606905e-02	k: 3894	n:250000
Cons ci ratio: 3.558413e-03	ci left: 8.277029e-01	ci right 8.306574e-01	k: 207296	n:250000
KS ci ratio: 9.833730e-02	ci left: 6.005288e-03	ci right 6.630240e-03	k: 1578	n:250000
SELE   250000 perm   83 sec   (3011 perm/sec)   p_kst 6.312000e-03   p_cons 8.291840e-01   p_joint 1.557600e-02

Outputting figure to mutsig2_images.part000000000154/SELE.6_1881_250000_0.006312_0.82918_0.015576.png
                gene_name: SELE
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0066 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 30 percent done.
SEMA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
Cons ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
KS ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
SEMA3C   10000 perm   2 sec   (5087 perm/sec)   p_kst 4.090000e-02   p_cons 1.900000e-03   p_joint 1.940000e-02

Joint ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
Cons ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
KS ci ratio: 1.331252e-01	ci left: 3.877774e-02	ci right 4.435654e-02	k: 830	n:20000
SEMA3C   20000 perm   4 sec   (4544 perm/sec)   p_kst 4.150000e-02   p_cons 1.600000e-03   p_joint 1.740000e-02

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 5.539003e-01	ci left: 1.208586e-03	ci right 2.158785e-03	k: 49	n:30000
KS ci ratio: 1.090398e-01	ci left: 3.904373e-02	ci right 4.357898e-02	k: 1238	n:30000
SEMA3C   30000 perm   7 sec   (4389 perm/sec)   p_kst 4.126667e-02   p_cons 1.633333e-03   p_joint 9.700000e-03

Joint ci ratio: 2.110586e-01	ci left: 7.647359e-03	ci right 9.475061e-03	k: 341	n:40000
Cons ci ratio: 4.714995e-01	ci left: 1.320351e-03	ci right 2.154664e-03	k: 68	n:40000
KS ci ratio: 9.536882e-02	ci left: 3.858909e-02	ci right 4.247797e-02	k: 1620	n:40000
SEMA3C   40000 perm   9 sec   (4285 perm/sec)   p_kst 4.050000e-02   p_cons 1.700000e-03   p_joint 8.525000e-03

Joint ci ratio: 2.245125e-01	ci left: 5.379655e-03	ci right 6.758638e-03	k: 302	n:50000
Cons ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
KS ci ratio: 8.517478e-02	ci left: 3.890639e-02	ci right 4.238720e-02	k: 2031	n:50000
SEMA3C   50000 perm   12 sec   (4188 perm/sec)   p_kst 4.062000e-02   p_cons 1.600000e-03   p_joint 6.040000e-03

Joint ci ratio: 2.354110e-01	ci left: 4.058617e-03	ci right 5.156815e-03	k: 275	n:60000
Cons ci ratio: 3.897229e-01	ci left: 1.356266e-03	ci right 2.026748e-03	k: 100	n:60000
KS ci ratio: 7.663682e-02	ci left: 4.017978e-02	ci right 4.339806e-02	k: 2506	n:60000
SEMA3C   60000 perm   15 sec   (4105 perm/sec)   p_kst 4.176667e-02   p_cons 1.666667e-03   p_joint 4.583333e-03

Joint ci ratio: 2.346370e-01	ci left: 3.505582e-03	ci right 4.450552e-03	k: 277	n:70000
Cons ci ratio: 3.701061e-01	ci left: 1.304650e-03	ci right 1.909300e-03	k: 111	n:70000
KS ci ratio: 7.046106e-02	ci left: 4.084892e-02	ci right 4.384631e-02	k: 2963	n:70000
SEMA3C   70000 perm   17 sec   (4030 perm/sec)   p_kst 4.232857e-02   p_cons 1.585714e-03   p_joint 3.957143e-03

Joint ci ratio: 2.207825e-01	ci left: 3.491732e-03	ci right 4.369846e-03	k: 313	n:80000
Cons ci ratio: 3.503393e-01	ci left: 1.289370e-03	ci right 1.847778e-03	k: 124	n:80000
KS ci ratio: 6.582343e-02	ci left: 4.105098e-02	ci right 4.385733e-02	k: 3395	n:80000
SEMA3C   80000 perm   20 sec   (3942 perm/sec)   p_kst 4.243750e-02   p_cons 1.550000e-03   p_joint 3.912500e-03

Joint ci ratio: 1.788189e-01	ci left: 4.836084e-03	ci right 5.796225e-03	k: 477	n:90000
Cons ci ratio: 3.264034e-01	ci left: 1.339307e-03	ci right 1.871423e-03	k: 143	n:90000
KS ci ratio: 6.197853e-02	ci left: 4.123507e-02	ci right 4.388341e-02	k: 3829	n:90000
SEMA3C   90000 perm   23 sec   (3872 perm/sec)   p_kst 4.254444e-02   p_cons 1.588889e-03   p_joint 5.300000e-03

Joint ci ratio: 1.796234e-01	ci left: 4.314163e-03	ci right 5.174950e-03	k: 473	n:100000
Cons ci ratio: 3.086889e-01	ci left: 1.361841e-03	ci right 1.867773e-03	k: 160	n:100000
KS ci ratio: 5.878040e-02	ci left: 4.132701e-02	ci right 4.383961e-02	k: 4257	n:100000
SEMA3C   100000 perm   26 sec   (3807 perm/sec)   p_kst 4.257000e-02   p_cons 1.600000e-03   p_joint 4.730000e-03

Joint ci ratio: 1.453058e-01	ci left: 6.094945e-03	ci right 7.058621e-03	k: 722	n:110000
Cons ci ratio: 2.952433e-01	ci left: 1.364075e-03	ci right 1.844635e-03	k: 175	n:110000
KS ci ratio: 5.617534e-02	ci left: 4.119883e-02	ci right 4.358901e-02	k: 4662	n:110000
SEMA3C   110000 perm   29 sec   (3749 perm/sec)   p_kst 4.238182e-02   p_cons 1.590909e-03   p_joint 6.563636e-03

Joint ci ratio: 1.096321e-01	ci left: 9.963400e-03	ci right 1.112710e-02	k: 1264	n:120000
Cons ci ratio: 2.826740e-01	ci left: 1.374077e-03	ci right 1.833881e-03	k: 191	n:120000
KS ci ratio: 5.379435e-02	ci left: 4.123393e-02	ci right 4.352159e-02	k: 5084	n:120000
SEMA3C   120000 perm   33 sec   (3690 perm/sec)   p_kst 4.236667e-02   p_cons 1.591667e-03   p_joint 1.053333e-02

Joint ci ratio: 1.319970e-01	ci left: 6.293484e-03	ci right 7.190269e-03	k: 875	n:130000
Cons ci ratio: 2.690061e-01	ci left: 1.411594e-03	ci right 1.857263e-03	k: 211	n:130000
KS ci ratio: 5.335303e-02	ci left: 3.880451e-02	ci right 4.093916e-02	k: 5182	n:130000
SEMA3C   130000 perm   36 sec   (3636 perm/sec)   p_kst 3.986154e-02   p_cons 1.623077e-03   p_joint 6.730769e-03

Joint ci ratio: 1.322571e-01	ci left: 5.823135e-03	ci right 6.654657e-03	k: 872	n:140000
Cons ci ratio: 2.617055e-01	ci left: 1.390777e-03	ci right 1.816007e-03	k: 223	n:140000
KS ci ratio: 5.138684e-02	ci left: 3.888072e-02	ci right 4.093839e-02	k: 5586	n:140000
SEMA3C   140000 perm   39 sec   (3580 perm/sec)   p_kst 3.990000e-02   p_cons 1.592857e-03   p_joint 6.228571e-03

Joint ci ratio: 1.091846e-01	ci left: 8.054581e-03	ci right 8.991232e-03	k: 1277	n:150000
Cons ci ratio: 2.517830e-01	ci left: 1.410341e-03	ci right 1.822641e-03	k: 241	n:150000
KS ci ratio: 4.968364e-02	ci left: 3.885580e-02	ci right 4.084204e-02	k: 5976	n:150000
SEMA3C   150000 perm   43 sec   (3525 perm/sec)   p_kst 3.984000e-02   p_cons 1.606667e-03   p_joint 8.513333e-03

Joint ci ratio: 1.044951e-01	ci left: 8.262930e-03	ci right 9.180005e-03	k: 1394	n:160000
Cons ci ratio: 2.419793e-01	ci left: 1.439467e-03	ci right 1.841438e-03	k: 261	n:160000
KS ci ratio: 4.818660e-02	ci left: 3.876085e-02	ci right 4.068087e-02	k: 6354	n:160000
SEMA3C   160000 perm   46 sec   (3470 perm/sec)   p_kst 3.971250e-02   p_cons 1.631250e-03   p_joint 8.712500e-03

Joint ci ratio: 1.010383e-01	ci left: 8.332814e-03	ci right 9.225236e-03	k: 1491	n:170000
Cons ci ratio: 2.332382e-01	ci left: 1.465440e-03	ci right 1.857751e-03	k: 281	n:170000
KS ci ratio: 4.664075e-02	ci left: 3.896288e-02	ci right 4.082932e-02	k: 6781	n:170000
SEMA3C   170000 perm   50 sec   (3419 perm/sec)   p_kst 3.988824e-02   p_cons 1.652941e-03   p_joint 8.770588e-03

Joint ci ratio: 9.846758e-02	ci left: 8.297812e-03	ci right 9.162567e-03	k: 1570	n:180000
Cons ci ratio: 2.276573e-01	ci left: 1.457314e-03	ci right 1.836804e-03	k: 295	n:180000
KS ci ratio: 4.528380e-02	ci left: 3.906090e-02	ci right 4.087617e-02	k: 7193	n:180000
SEMA3C   180000 perm   53 sec   (3366 perm/sec)   p_kst 3.996111e-02   p_cons 1.638889e-03   p_joint 8.722222e-03

Joint ci ratio: 9.945240e-02	ci left: 7.706981e-03	ci right 8.518661e-03	k: 1540	n:190000
Cons ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
KS ci ratio: 4.406595e-02	ci left: 3.910244e-02	ci right 4.086953e-02	k: 7596	n:190000
SEMA3C   190000 perm   57 sec   (3321 perm/sec)   p_kst 3.997895e-02   p_cons 1.626316e-03   p_joint 8.105263e-03

Joint ci ratio: 9.289403e-02	ci left: 8.414858e-03	ci right 9.239473e-03	k: 1764	n:200000
Cons ci ratio: 2.162677e-01	ci left: 1.462693e-03	ci right 1.821999e-03	k: 327	n:200000
KS ci ratio: 4.286049e-02	ci left: 3.928392e-02	ci right 4.100944e-02	k: 8028	n:200000
SEMA3C   200000 perm   61 sec   (3277 perm/sec)   p_kst 4.014000e-02   p_cons 1.635000e-03   p_joint 8.820000e-03

Joint ci ratio: 9.151233e-02	ci left: 8.265334e-03	ci right 9.062603e-03	k: 1818	n:210000
Cons ci ratio: 2.105663e-01	ci left: 1.474176e-03	ci right 1.825524e-03	k: 345	n:210000
KS ci ratio: 4.185977e-02	ci left: 3.924600e-02	ci right 4.092863e-02	k: 8417	n:210000
SEMA3C   210000 perm   65 sec   (3235 perm/sec)   p_kst 4.008095e-02   p_cons 1.642857e-03   p_joint 8.657143e-03

Joint ci ratio: 7.691722e-02	ci left: 1.121916e-02	ci right 1.212105e-02	k: 2566	n:220000
Cons ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
KS ci ratio: 4.096481e-02	ci left: 3.913994e-02	ci right 4.078130e-02	k: 8790	n:220000
SEMA3C   220000 perm   69 sec   (3189 perm/sec)   p_kst 3.995455e-02   p_cons 1.650000e-03   p_joint 1.166364e-02

Joint ci ratio: 7.638220e-02	ci left: 1.088908e-02	ci right 1.175808e-02	k: 2603	n:230000
Cons ci ratio: 2.017243e-01	ci left: 1.473814e-03	ci right 1.808511e-03	k: 376	n:230000
KS ci ratio: 4.014084e-02	ci left: 3.901332e-02	ci right 4.061570e-02	k: 9156	n:230000
SEMA3C   230000 perm   73 sec   (3144 perm/sec)   p_kst 3.980870e-02   p_cons 1.634783e-03   p_joint 1.131739e-02

Joint ci ratio: 7.481879e-02	ci left: 1.088504e-02	ci right 1.173516e-02	k: 2713	n:240000
Cons ci ratio: 1.965760e-01	ci left: 1.491585e-03	ci right 1.820638e-03	k: 396	n:240000
KS ci ratio: 3.788309e-02	ci left: 4.189870e-02	ci right 4.352070e-02	k: 10249	n:240000
SEMA3C   240000 perm   77 sec   (3103 perm/sec)   p_kst 4.270417e-02   p_cons 1.650000e-03   p_joint 1.130417e-02

Joint ci ratio: 7.484985e-02	ci left: 1.044562e-02	ci right 1.126178e-02	k: 2712	n:250000
Cons ci ratio: 1.943879e-01	ci left: 1.466158e-03	ci right 1.785575e-03	k: 405	n:250000
KS ci ratio: 3.714512e-02	ci left: 4.185527e-02	ci right 4.344335e-02	k: 10661	n:250000
SEMA3C   250000 perm   82 sec   (3062 perm/sec)   p_kst 4.264400e-02   p_cons 1.620000e-03   p_joint 1.084800e-02

Joint ci ratio: 7.378755e-02	ci left: 1.034205e-02	ci right 1.113815e-02	k: 2791	n:260000
Cons ci ratio: 1.893240e-01	ci left: 1.490321e-03	ci right 1.805571e-03	k: 427	n:260000
KS ci ratio: 3.639719e-02	ci left: 4.192985e-02	ci right 4.348806e-02	k: 11103	n:260000
SEMA3C   260000 perm   86 sec   (3021 perm/sec)   p_kst 4.270385e-02   p_cons 1.642308e-03   p_joint 1.073462e-02

Joint ci ratio: 7.825752e-02	ci left: 8.846931e-03	ci right 9.571070e-03	k: 2485	n:270000
Cons ci ratio: 1.860916e-01	ci left: 1.488069e-03	ci right 1.796861e-03	k: 442	n:270000
KS ci ratio: 3.568462e-02	ci left: 4.201756e-02	ci right 4.354783e-02	k: 11550	n:270000
SEMA3C   270000 perm   91 sec   (2982 perm/sec)   p_kst 4.277778e-02   p_cons 1.637037e-03   p_joint 9.203704e-03

Joint ci ratio: 6.873645e-02	ci left: 1.108729e-02	ci right 1.188001e-02	k: 3214	n:280000
Cons ci ratio: 1.812443e-01	ci left: 1.516699e-03	ci right 1.822335e-03	k: 466	n:280000
KS ci ratio: 3.501995e-02	ci left: 4.208157e-02	ci right 4.358505e-02	k: 11992	n:280000
SEMA3C   280000 perm   95 sec   (2942 perm/sec)   p_kst 4.282857e-02   p_cons 1.664286e-03   p_joint 1.147857e-02

Joint ci ratio: 7.882814e-02	ci left: 8.121740e-03	ci right 8.791588e-03	k: 2451	n:290000
Cons ci ratio: 1.795251e-01	ci left: 1.494031e-03	ci right 1.791933e-03	k: 475	n:290000
KS ci ratio: 3.443885e-02	ci left: 4.202856e-02	ci right 4.350473e-02	k: 12401	n:290000
SEMA3C   290000 perm   100 sec   (2904 perm/sec)   p_kst 4.276207e-02   p_cons 1.637931e-03   p_joint 8.451724e-03

Joint ci ratio: 7.743476e-02	ci left: 8.141888e-03	ci right 8.800993e-03	k: 2540	n:300000
Cons ci ratio: 1.755133e-01	ci left: 1.514306e-03	ci right 1.808788e-03	k: 497	n:300000
KS ci ratio: 3.386367e-02	ci left: 4.203218e-02	ci right 4.348334e-02	k: 12826	n:300000
SEMA3C   300000 perm   105 sec   (2868 perm/sec)   p_kst 4.275333e-02   p_cons 1.656667e-03   p_joint 8.466667e-03

Joint ci ratio: 7.886604e-02	ci left: 7.594513e-03	ci right 8.221190e-03	k: 2450	n:310000
Cons ci ratio: 1.719245e-01	ci left: 1.530255e-03	ci right 1.821123e-03	k: 518	n:310000
KS ci ratio: 3.329932e-02	ci left: 4.207735e-02	ci right 4.350540e-02	k: 13264	n:310000
SEMA3C   310000 perm   109 sec   (2835 perm/sec)   p_kst 4.278710e-02   p_cons 1.670968e-03   p_joint 7.903226e-03

Joint ci ratio: 8.119472e-02	ci left: 6.937530e-03	ci right 7.527697e-03	k: 2313	n:320000
Cons ci ratio: 1.690182e-01	ci left: 1.536286e-03	ci right 1.822860e-03	k: 536	n:320000
KS ci ratio: 3.281234e-02	ci left: 4.199588e-02	ci right 4.339992e-02	k: 13662	n:320000
SEMA3C   320000 perm   114 sec   (2802 perm/sec)   p_kst 4.269375e-02   p_cons 1.675000e-03   p_joint 7.228125e-03

Joint ci ratio: 6.371727e-02	ci left: 1.097794e-02	ci right 1.170341e-02	k: 3741	n:330000
Cons ci ratio: 1.649204e-01	ci left: 1.568133e-03	ci right 1.852853e-03	k: 563	n:330000
KS ci ratio: 3.232810e-02	ci left: 4.196458e-02	ci right 4.334649e-02	k: 14075	n:330000
SEMA3C   330000 perm   119 sec   (2770 perm/sec)   p_kst 4.265152e-02   p_cons 1.706061e-03   p_joint 1.133636e-02

Joint ci ratio: 7.304233e-02	ci left: 8.093064e-03	ci right 8.709476e-03	k: 2855	n:340000
Cons ci ratio: 1.630530e-01	ci left: 1.558677e-03	ci right 1.838161e-03	k: 576	n:340000
KS ci ratio: 3.183830e-02	ci left: 4.200241e-02	ci right 4.336422e-02	k: 14511	n:340000
SEMA3C   340000 perm   124 sec   (2738 perm/sec)   p_kst 4.267941e-02   p_cons 1.694118e-03   p_joint 8.397059e-03

Joint ci ratio: 7.285851e-02	ci left: 7.903881e-03	ci right 8.504304e-03	k: 2870	n:350000
Cons ci ratio: 1.607028e-01	ci left: 1.560747e-03	ci right 1.836179e-03	k: 593	n:350000
KS ci ratio: 3.139205e-02	ci left: 4.198151e-02	ci right 4.332322e-02	k: 14927	n:350000
SEMA3C   350000 perm   130 sec   (2701 perm/sec)   p_kst 4.264857e-02   p_cons 1.694286e-03   p_joint 8.200000e-03

Joint ci ratio: 5.995986e-02	ci left: 1.138138e-02	ci right 1.208762e-02	k: 4223	n:360000
Cons ci ratio: 1.578059e-01	ci left: 1.576070e-03	ci right 1.848718e-03	k: 615	n:360000
KS ci ratio: 3.098727e-02	ci left: 4.190123e-02	ci right 4.322281e-02	k: 15321	n:360000
SEMA3C   360000 perm   135 sec   (2662 perm/sec)   p_kst 4.255833e-02   p_cons 1.708333e-03   p_joint 1.173056e-02

Joint ci ratio: 5.536511e-02	ci left: 1.299732e-02	ci right 1.374006e-02	k: 4945	n:370000
Cons ci ratio: 1.561675e-01	ci left: 1.567228e-03	ci right 1.835267e-03	k: 628	n:370000
KS ci ratio: 3.056425e-02	ci left: 4.191394e-02	ci right 4.321756e-02	k: 15748	n:370000
SEMA3C   370000 perm   141 sec   (2632 perm/sec)   p_kst 4.256216e-02   p_cons 1.697297e-03   p_joint 1.336486e-02

Joint ci ratio: 5.463000e-02	ci left: 1.300307e-02	ci right 1.373596e-02	k: 5079	n:380000
Cons ci ratio: 1.543385e-01	ci left: 1.563925e-03	ci right 1.827977e-03	k: 643	n:380000
KS ci ratio: 3.014350e-02	ci left: 4.196529e-02	ci right 4.325222e-02	k: 16190	n:380000
SEMA3C   380000 perm   146 sec   (2601 perm/sec)   p_kst 4.260526e-02   p_cons 1.692105e-03   p_joint 1.336579e-02

Joint ci ratio: 5.488632e-02	ci left: 1.255578e-02	ci right 1.326687e-02	k: 5034	n:390000
Cons ci ratio: 1.523409e-01	ci left: 1.565742e-03	ci right 1.826367e-03	k: 660	n:390000
KS ci ratio: 2.978645e-02	ci left: 4.188683e-02	ci right 4.315588e-02	k: 16582	n:390000
SEMA3C   390000 perm   152 sec   (2574 perm/sec)   p_kst 4.251795e-02   p_cons 1.692308e-03   p_joint 1.290769e-02

Joint ci ratio: 5.756524e-02	ci left: 1.112998e-02	ci right 1.179212e-02	k: 4583	n:400000
Cons ci ratio: 1.500866e-01	ci left: 1.574707e-03	ci right 1.832597e-03	k: 680	n:400000
KS ci ratio: 2.940653e-02	ci left: 4.190919e-02	ci right 4.316245e-02	k: 17013	n:400000
SEMA3C   400000 perm   157 sec   (2545 perm/sec)   p_kst 4.253250e-02   p_cons 1.700000e-03   p_joint 1.145750e-02

Joint ci ratio: 6.301143e-02	ci left: 9.056459e-03	ci right 9.648068e-03	k: 3833	n:410000
Cons ci ratio: 1.475086e-01	ci left: 1.592658e-03	ci right 1.848613e-03	k: 704	n:410000
KS ci ratio: 2.905123e-02	ci left: 4.190149e-02	ci right 4.313913e-02	k: 17432	n:410000
SEMA3C   410000 perm   163 sec   (2517 perm/sec)   p_kst 4.251707e-02   p_cons 1.717073e-03   p_joint 9.348780e-03

Joint ci ratio: 6.302681e-02	ci left: 8.838454e-03	ci right 9.415967e-03	k: 3832	n:420000
Cons ci ratio: 1.450590e-01	ci left: 1.609790e-03	ci right 1.863830e-03	k: 728	n:420000
KS ci ratio: 2.869591e-02	ci left: 4.192972e-02	ci right 4.315279e-02	k: 17866	n:420000
SEMA3C   420000 perm   169 sec   (2490 perm/sec)   p_kst 4.253810e-02   p_cons 1.733333e-03   p_joint 9.123810e-03

Joint ci ratio: 6.253342e-02	ci left: 8.772533e-03	ci right 9.341089e-03	k: 3893	n:430000
Cons ci ratio: 1.436864e-01	ci left: 1.603735e-03	ci right 1.854219e-03	k: 742	n:430000
KS ci ratio: 2.834766e-02	ci left: 4.197289e-02	ci right 4.318212e-02	k: 18307	n:430000
SEMA3C   430000 perm   175 sec   (2462 perm/sec)   p_kst 4.257442e-02   p_cons 1.725581e-03   p_joint 9.053488e-03

Joint ci ratio: 6.209896e-02	ci left: 8.696199e-03	ci right 9.255751e-03	k: 3948	n:440000
Cons ci ratio: 1.424463e-01	ci left: 1.595773e-03	ci right 1.842681e-03	k: 755	n:440000
KS ci ratio: 2.803834e-02	ci left: 4.193743e-02	ci right 4.313224e-02	k: 18714	n:440000
SEMA3C   440000 perm   181 sec   (2437 perm/sec)   p_kst 4.253182e-02   p_cons 1.715909e-03   p_joint 8.972727e-03

Joint ci ratio: 5.321318e-02	ci left: 1.159837e-02	ci right 1.223460e-02	k: 5361	n:450000
Cons ci ratio: 1.402367e-01	ci left: 1.611760e-03	ci right 1.856949e-03	k: 779	n:450000
KS ci ratio: 2.773591e-02	ci left: 4.191244e-02	ci right 4.309346e-02	k: 19125	n:450000
SEMA3C   450000 perm   187 sec   (2410 perm/sec)   p_kst 4.250000e-02   p_cons 1.731111e-03   p_joint 1.191333e-02

Joint ci ratio: 5.268589e-02	ci left: 1.157790e-02	ci right 1.220653e-02	k: 5469	n:460000
Cons ci ratio: 1.387330e-01	ci left: 1.612389e-03	ci right 1.854826e-03	k: 796	n:460000
KS ci ratio: 2.744526e-02	ci left: 4.188213e-02	ci right 4.304973e-02	k: 19533	n:460000
SEMA3C   460000 perm   193 sec   (2386 perm/sec)   p_kst 4.246304e-02   p_cons 1.730435e-03   p_joint 1.188913e-02

Joint ci ratio: 5.239303e-02	ci left: 1.146173e-02	ci right 1.208048e-02	k: 5531	n:470000
Cons ci ratio: 1.363569e-01	ci left: 1.635608e-03	ci right 1.876983e-03	k: 824	n:470000
KS ci ratio: 2.714437e-02	ci left: 4.191024e-02	ci right 4.306562e-02	k: 19968	n:470000
SEMA3C   470000 perm   199 sec   (2362 perm/sec)   p_kst 4.248511e-02   p_cons 1.753191e-03   p_joint 1.176809e-02

Joint ci ratio: 4.966471e-02	ci left: 1.249418e-02	ci right 1.313255e-02	k: 6149	n:480000
Cons ci ratio: 1.348131e-01	ci left: 1.639774e-03	ci right 1.878804e-03	k: 843	n:480000
KS ci ratio: 2.686623e-02	ci left: 4.189792e-02	ci right 4.304094e-02	k: 20384	n:480000
SEMA3C   480000 perm   205 sec   (2340 perm/sec)   p_kst 4.246667e-02   p_cons 1.756250e-03   p_joint 1.281042e-02

Joint ci ratio: 4.932721e-02	ci left: 1.241051e-02	ci right 1.304017e-02	k: 6234	n:490000
Cons ci ratio: 1.340226e-01	ci left: 1.626030e-03	ci right 1.861556e-03	k: 853	n:490000
KS ci ratio: 2.658980e-02	ci left: 4.190644e-02	ci right 4.303775e-02	k: 20810	n:490000
SEMA3C   490000 perm   212 sec   (2317 perm/sec)   p_kst 4.246939e-02   p_cons 1.740816e-03   p_joint 1.272245e-02

Joint ci ratio: 4.879745e-02	ci left: 1.243097e-02	ci right 1.305470e-02	k: 6370	n:500000
Cons ci ratio: 1.321773e-01	ci left: 1.639912e-03	ci right 1.873922e-03	k: 877	n:500000
KS ci ratio: 2.632691e-02	ci left: 4.189878e-02	ci right 4.301853e-02	k: 21228	n:500000
SEMA3C   500000 perm   218 sec   (2294 perm/sec)   p_kst 4.245600e-02   p_cons 1.754000e-03   p_joint 1.274000e-02

Joint ci ratio: 4.982738e-02	ci left: 1.169134e-02	ci right 1.229069e-02	k: 6114	n:510000
Cons ci ratio: 1.305512e-01	ci left: 1.649477e-03	ci right 1.881732e-03	k: 899	n:510000
KS ci ratio: 2.606914e-02	ci left: 4.189927e-02	ci right 4.300790e-02	k: 21650	n:510000
SEMA3C   510000 perm   225 sec   (2271 perm/sec)   p_kst 4.245098e-02   p_cons 1.762745e-03   p_joint 1.198824e-02

Joint ci ratio: 4.933354e-02	ci left: 1.170011e-02	ci right 1.229380e-02	k: 6237	n:520000
Cons ci ratio: 1.297615e-01	ci left: 1.638221e-03	ci right 1.867387e-03	k: 910	n:520000
KS ci ratio: 2.581392e-02	ci left: 4.191507e-02	ci right 4.301311e-02	k: 22080	n:520000
SEMA3C   520000 perm   231 sec   (2249 perm/sec)   p_kst 4.246154e-02   p_cons 1.750000e-03   p_joint 1.199423e-02

Joint ci ratio: 4.885799e-02	ci left: 1.170672e-02	ci right 1.229486e-02	k: 6359	n:530000
Cons ci ratio: 1.285675e-01	ci left: 1.638350e-03	ci right 1.865265e-03	k: 927	n:530000
KS ci ratio: 2.556427e-02	ci left: 4.193596e-02	ci right 4.302376e-02	k: 22513	n:530000
SEMA3C   530000 perm   238 sec   (2227 perm/sec)   p_kst 4.247736e-02   p_cons 1.749057e-03   p_joint 1.199811e-02

Joint ci ratio: 4.837327e-02	ci left: 1.172409e-02	ci right 1.230709e-02	k: 6487	n:540000
Cons ci ratio: 1.272710e-01	ci left: 1.642070e-03	ci right 1.867033e-03	k: 946	n:540000
KS ci ratio: 2.530216e-02	ci left: 4.201871e-02	ci right 4.309732e-02	k: 22980	n:540000
SEMA3C   540000 perm   245 sec   (2205 perm/sec)   p_kst 4.255556e-02   p_cons 1.751852e-03   p_joint 1.201296e-02

Joint ci ratio: 4.849600e-02	ci left: 1.145520e-02	ci right 1.202632e-02	k: 6456	n:550000
Cons ci ratio: 1.256228e-01	ci left: 1.656232e-03	ci right 1.879978e-03	k: 971	n:550000
KS ci ratio: 2.508652e-02	ci left: 4.197380e-02	ci right 4.304194e-02	k: 23378	n:550000
SEMA3C   550000 perm   252 sec   (2185 perm/sec)   p_kst 4.250545e-02   p_cons 1.765455e-03   p_joint 1.173818e-02

Joint ci ratio: 4.748125e-02	ci left: 1.173939e-02	ci right 1.231210e-02	k: 6733	n:560000
Cons ci ratio: 1.244126e-01	ci left: 1.659524e-03	ci right 1.881396e-03	k: 990	n:560000
KS ci ratio: 2.485012e-02	ci left: 4.201573e-02	ci right 4.307472e-02	k: 23824	n:560000
SEMA3C   560000 perm   259 sec   (2165 perm/sec)   p_kst 4.254286e-02   p_cons 1.767857e-03   p_joint 1.202321e-02

Joint ci ratio: 5.319564e-02	ci left: 9.185734e-03	ci right 9.689446e-03	k: 5378	n:570000
Cons ci ratio: 1.236050e-01	ci left: 1.652508e-03	ci right 1.871904e-03	k: 1003	n:570000
KS ci ratio: 2.463990e-02	ci left: 4.199171e-02	ci right 4.304102e-02	k: 24233	n:570000
SEMA3C   570000 perm   266 sec   (2144 perm/sec)   p_kst 4.251404e-02   p_cons 1.759649e-03   p_joint 9.435088e-03

Joint ci ratio: 5.269313e-02	ci left: 9.202597e-03	ci right 9.702321e-03	k: 5481	n:580000
Cons ci ratio: 1.228735e-01	ci left: 1.644068e-03	ci right 1.860957e-03	k: 1015	n:580000
KS ci ratio: 2.442923e-02	ci left: 4.198741e-02	ci right 4.302751e-02	k: 24653	n:580000
SEMA3C   580000 perm   273 sec   (2125 perm/sec)   p_kst 4.250517e-02   p_cons 1.750000e-03   p_joint 9.450000e-03

Joint ci ratio: 5.224239e-02	ci left: 9.205525e-03	ci right 9.701004e-03	k: 5576	n:590000
Cons ci ratio: 1.217403e-01	ci left: 1.647421e-03	ci right 1.862603e-03	k: 1034	n:590000
KS ci ratio: 2.421178e-02	ci left: 4.202373e-02	ci right 4.305534e-02	k: 25097	n:590000
SEMA3C   590000 perm   280 sec   (2106 perm/sec)   p_kst 4.253729e-02   p_cons 1.752542e-03   p_joint 9.450847e-03

Joint ci ratio: 5.179841e-02	ci left: 9.210019e-03	ci right 9.701401e-03	k: 5672	n:600000
Cons ci ratio: 1.212153e-01	ci left: 1.634508e-03	ci right 1.847016e-03	k: 1043	n:600000
KS ci ratio: 2.401329e-02	ci left: 4.201415e-02	ci right 4.303694e-02	k: 25514	n:600000
SEMA3C   600000 perm   287 sec   (2088 perm/sec)   p_kst 4.252333e-02   p_cons 1.738333e-03   p_joint 9.453333e-03

Joint ci ratio: 5.134310e-02	ci left: 9.222476e-03	ci right 9.710069e-03	k: 5773	n:610000
Cons ci ratio: 1.204680e-01	ci left: 1.628379e-03	ci right 1.838693e-03	k: 1056	n:610000
KS ci ratio: 2.381816e-02	ci left: 4.200980e-02	ci right 4.302406e-02	k: 25934	n:610000
SEMA3C   610000 perm   295 sec   (2070 perm/sec)   p_kst 4.251475e-02   p_cons 1.731148e-03   p_joint 9.463934e-03

Joint ci ratio: 5.127540e-02	ci left: 9.099187e-03	ci right 9.579608e-03	k: 5789	n:620000
Cons ci ratio: 1.196783e-01	ci left: 1.624017e-03	ci right 1.832296e-03	k: 1070	n:620000
KS ci ratio: 2.360574e-02	ci left: 4.208100e-02	ci right 4.308780e-02	k: 26401	n:620000
SEMA3C   620000 perm   302 sec   (2052 perm/sec)   p_kst 4.258226e-02   p_cons 1.725806e-03   p_joint 9.337097e-03

Joint ci ratio: 5.087288e-02	ci left: 9.098922e-03	ci right 9.575448e-03	k: 5881	n:630000
Cons ci ratio: 1.185760e-01	ci left: 1.629040e-03	ci right 1.835903e-03	k: 1090	n:630000
KS ci ratio: 2.341803e-02	ci left: 4.208368e-02	ci right 4.308244e-02	k: 26826	n:630000
SEMA3C   630000 perm   310 sec   (2035 perm/sec)   p_kst 4.258095e-02   p_cons 1.730159e-03   p_joint 9.334921e-03

Joint ci ratio: 5.046264e-02	ci left: 9.104852e-03	ci right 9.577731e-03	k: 5977	n:640000
Cons ci ratio: 1.177161e-01	ci left: 1.627847e-03	ci right 1.832955e-03	k: 1106	n:640000
KS ci ratio: 2.323428e-02	ci left: 4.208787e-02	ci right 4.307878e-02	k: 27252	n:640000
SEMA3C   640000 perm   317 sec   (2018 perm/sec)   p_kst 4.258125e-02   p_cons 1.728125e-03   p_joint 9.339063e-03

Joint ci ratio: 4.961878e-02	ci left: 9.274716e-03	ci right 9.748132e-03	k: 6181	n:650000
Cons ci ratio: 1.172413e-01	ci left: 1.616242e-03	ci right 1.819010e-03	k: 1115	n:650000
KS ci ratio: 2.307439e-02	ci left: 4.202310e-02	ci right 4.300559e-02	k: 27633	n:650000
SEMA3C   650000 perm   325 sec   (2001 perm/sec)   p_kst 4.251231e-02   p_cons 1.715385e-03   p_joint 9.509231e-03

Joint ci ratio: 4.928549e-02	ci left: 9.259887e-03	ci right 9.729282e-03	k: 6265	n:660000
Cons ci ratio: 1.164099e-01	ci left: 1.615287e-03	ci right 1.816400e-03	k: 1131	n:660000
KS ci ratio: 2.289769e-02	ci left: 4.203115e-02	ci right 4.300620e-02	k: 28061	n:660000
SEMA3C   660000 perm   333 sec   (1984 perm/sec)   p_kst 4.251667e-02   p_cons 1.713636e-03   p_joint 9.492424e-03

Joint ci ratio: 4.886956e-02	ci left: 9.279424e-03	ci right 9.745727e-03	k: 6372	n:670000
Cons ci ratio: 1.154952e-01	ci left: 1.617265e-03	ci right 1.816934e-03	k: 1149	n:670000
KS ci ratio: 2.273167e-02	ci left: 4.201523e-02	ci right 4.298276e-02	k: 28473	n:670000
SEMA3C   670000 perm   340 sec   (1968 perm/sec)   p_kst 4.249701e-02   p_cons 1.714925e-03   p_joint 9.510448e-03

Joint ci ratio: 4.850934e-02	ci left: 9.280967e-03	ci right 9.743814e-03	k: 6467	n:680000
Cons ci ratio: 1.149969e-01	ci left: 1.607763e-03	ci right 1.805344e-03	k: 1159	n:680000
KS ci ratio: 2.257491e-02	ci left: 4.197933e-02	ci right 4.293928e-02	k: 28871	n:680000
SEMA3C   680000 perm   349 sec   (1947 perm/sec)   p_kst 4.245735e-02   p_cons 1.704412e-03   p_joint 9.510294e-03

Joint ci ratio: 4.817180e-02	ci left: 9.276750e-03	ci right 9.736078e-03	k: 6558	n:690000
Cons ci ratio: 1.143094e-01	ci left: 1.604170e-03	ci right 1.800051e-03	k: 1173	n:690000
KS ci ratio: 2.241096e-02	ci left: 4.198197e-02	ci right 4.293492e-02	k: 29295	n:690000
SEMA3C   690000 perm   357 sec   (1931 perm/sec)   p_kst 4.245652e-02   p_cons 1.700000e-03   p_joint 9.504348e-03

Joint ci ratio: 4.783032e-02	ci left: 9.276899e-03	ci right 9.732889e-03	k: 6652	n:700000
Cons ci ratio: 1.133953e-01	ci left: 1.607624e-03	ci right 1.802252e-03	k: 1192	n:700000
KS ci ratio: 2.225015e-02	ci left: 4.198598e-02	ci right 4.293209e-02	k: 29720	n:700000
SEMA3C   700000 perm   365 sec   (1916 perm/sec)   p_kst 4.245714e-02   p_cons 1.702857e-03   p_joint 9.502857e-03

Joint ci ratio: 4.757080e-02	ci left: 9.247826e-03	ci right 9.699852e-03	k: 6725	n:710000
Cons ci ratio: 1.124564e-01	ci left: 1.612355e-03	ci right 1.805832e-03	k: 1212	n:710000
KS ci ratio: 2.208815e-02	ci left: 4.200672e-02	ci right 4.294632e-02	k: 30157	n:710000
SEMA3C   710000 perm   374 sec   (1897 perm/sec)   p_kst 4.247465e-02   p_cons 1.707042e-03   p_joint 9.471831e-03

Joint ci ratio: 4.739998e-02	ci left: 9.186624e-03	ci right 9.634003e-03	k: 6774	n:720000
Cons ci ratio: 1.111796e-01	ci left: 1.627763e-03	ci right 1.820726e-03	k: 1240	n:720000
KS ci ratio: 2.192889e-02	ci left: 4.202966e-02	ci right 4.296291e-02	k: 30596	n:720000
SEMA3C   720000 perm   383 sec   (1882 perm/sec)   p_kst 4.249444e-02   p_cons 1.722222e-03   p_joint 9.408333e-03

Joint ci ratio: 4.709184e-02	ci left: 9.181257e-03	ci right 9.625389e-03	k: 6863	n:730000
Cons ci ratio: 1.099888e-01	ci left: 1.641428e-03	ci right 1.833793e-03	k: 1267	n:730000
KS ci ratio: 2.178330e-02	ci left: 4.201385e-02	ci right 4.294047e-02	k: 31007	n:730000
SEMA3C   730000 perm   391 sec   (1867 perm/sec)   p_kst 4.247534e-02   p_cons 1.735616e-03   p_joint 9.401370e-03

Joint ci ratio: 4.684067e-02	ci left: 9.156009e-03	ci right 9.596493e-03	k: 6937	n:740000
Cons ci ratio: 1.087934e-01	ci left: 1.656050e-03	ci right 1.847884e-03	k: 1295	n:740000
KS ci ratio: 2.162978e-02	ci left: 4.203881e-02	ci right 4.295937e-02	k: 31448	n:740000
SEMA3C   740000 perm   400 sec   (1852 perm/sec)   p_kst 4.249730e-02   p_cons 1.750000e-03   p_joint 9.374324e-03

Joint ci ratio: 4.711859e-02	ci left: 8.928491e-03	ci right 9.360647e-03	k: 6857	n:750000
Cons ci ratio: 1.080457e-01	ci left: 1.657319e-03	ci right 1.847896e-03	k: 1313	n:750000
KS ci ratio: 2.148826e-02	ci left: 4.202997e-02	ci right 4.294424e-02	k: 31864	n:750000
SEMA3C   750000 perm   408 sec   (1837 perm/sec)   p_kst 4.248533e-02   p_cons 1.750667e-03   p_joint 9.142667e-03

Joint ci ratio: 4.690796e-02	ci left: 8.891626e-03	ci right 9.320022e-03	k: 6919	n:760000
Cons ci ratio: 1.074344e-01	ci left: 1.654717e-03	ci right 1.843850e-03	k: 1328	n:760000
KS ci ratio: 2.135639e-02	ci left: 4.199519e-02	ci right 4.290303e-02	k: 32260	n:760000
SEMA3C   760000 perm   417 sec   (1822 perm/sec)   p_kst 4.244737e-02   p_cons 1.747368e-03   p_joint 9.103947e-03

Joint ci ratio: 4.645565e-02	ci left: 8.949435e-03	ci right 9.376348e-03	k: 7054	n:770000
Cons ci ratio: 1.069131e-01	ci left: 1.649657e-03	ci right 1.837240e-03	k: 1341	n:770000
KS ci ratio: 2.120964e-02	ci left: 4.202724e-02	ci right 4.292945e-02	k: 32707	n:770000
SEMA3C   770000 perm   426 sec   (1808 perm/sec)   p_kst 4.247662e-02   p_cons 1.741558e-03   p_joint 9.161039e-03

Joint ci ratio: 4.618176e-02	ci left: 8.941143e-03	ci right 9.365078e-03	k: 7138	n:780000
Cons ci ratio: 1.063599e-01	ci left: 1.645978e-03	ci right 1.832113e-03	k: 1355	n:780000
KS ci ratio: 2.107948e-02	ci left: 4.200618e-02	ci right 4.290235e-02	k: 33113	n:780000
SEMA3C   780000 perm   435 sec   (1795 perm/sec)   p_kst 4.245256e-02   p_cons 1.737179e-03   p_joint 9.151282e-03

Joint ci ratio: 4.603180e-02	ci left: 8.886766e-03	ci right 9.306719e-03	k: 7185	n:790000
Cons ci ratio: 1.056609e-01	ci left: 1.647323e-03	ci right 1.832310e-03	k: 1373	n:790000
KS ci ratio: 2.094288e-02	ci left: 4.201969e-02	ci right 4.291026e-02	k: 33546	n:790000
SEMA3C   790000 perm   444 sec   (1781 perm/sec)   p_kst 4.246329e-02   p_cons 1.737975e-03   p_joint 9.094937e-03

Joint ci ratio: 4.595063e-02	ci left: 8.807800e-03	ci right 9.223267e-03	k: 7211	n:800000
Cons ci ratio: 1.047872e-01	ci left: 1.654726e-03	ci right 1.838912e-03	k: 1396	n:800000
KS ci ratio: 2.081754e-02	ci left: 4.199929e-02	ci right 4.288403e-02	k: 33952	n:800000
SEMA3C   800000 perm   453 sec   (1767 perm/sec)   p_kst 4.244000e-02   p_cons 1.745000e-03   p_joint 9.013750e-03

Joint ci ratio: 4.529252e-02	ci left: 8.955379e-03	ci right 9.371600e-03	k: 7421	n:810000
Cons ci ratio: 1.040449e-01	ci left: 1.658343e-03	ci right 1.841545e-03	k: 1416	n:810000
KS ci ratio: 2.068563e-02	ci left: 4.201380e-02	ci right 4.289318e-02	k: 34386	n:810000
SEMA3C   810000 perm   462 sec   (1754 perm/sec)   p_kst 4.245185e-02   p_cons 1.748148e-03   p_joint 9.161728e-03

Joint ci ratio: 4.452654e-02	ci left: 9.154877e-03	ci right 9.572990e-03	k: 7677	n:820000
Cons ci ratio: 1.033542e-01	ci left: 1.660690e-03	ci right 1.842859e-03	k: 1435	n:820000
KS ci ratio: 2.056359e-02	ci left: 4.199886e-02	ci right 4.287267e-02	k: 34796	n:820000
SEMA3C   820000 perm   471 sec   (1740 perm/sec)   p_kst 4.243415e-02   p_cons 1.750000e-03   p_joint 9.362195e-03

Joint ci ratio: 4.426507e-02	ci left: 9.152998e-03	ci right 9.568509e-03	k: 7768	n:830000
Cons ci ratio: 1.027478e-01	ci left: 1.660635e-03	ci right 1.841665e-03	k: 1452	n:830000
KS ci ratio: 2.043854e-02	ci left: 4.200467e-02	ci right 4.287323e-02	k: 35223	n:830000
SEMA3C   830000 perm   481 sec   (1727 perm/sec)   p_kst 4.243735e-02   p_cons 1.749398e-03   p_joint 9.359036e-03

Joint ci ratio: 4.423022e-02	ci left: 9.059330e-03	ci right 9.470256e-03	k: 7781	n:840000
Cons ci ratio: 1.022217e-01	ci left: 1.658265e-03	ci right 1.838056e-03	k: 1467	n:840000
KS ci ratio: 2.032288e-02	ci left: 4.198192e-02	ci right 4.284505e-02	k: 35626	n:840000
SEMA3C   840000 perm   490 sec   (1715 perm/sec)   p_kst 4.241190e-02   p_cons 1.746429e-03   p_joint 9.263095e-03

Joint ci ratio: 4.450473e-02	ci left: 8.843366e-03	ci right 9.247049e-03	k: 7687	n:850000
Cons ci ratio: 1.016006e-01	ci left: 1.659393e-03	ci right 1.838148e-03	k: 1485	n:850000
KS ci ratio: 2.020127e-02	ci left: 4.199134e-02	ci right 4.284943e-02	k: 36056	n:850000
SEMA3C   850000 perm   499 sec   (1703 perm/sec)   p_kst 4.241882e-02   p_cons 1.747059e-03   p_joint 9.043529e-03

Joint ci ratio: 4.427236e-02	ci left: 8.833676e-03	ci right 9.234758e-03	k: 7768	n:860000
Cons ci ratio: 1.011594e-01	ci left: 1.654831e-03	ci right 1.832273e-03	k: 1498	n:860000
KS ci ratio: 2.008641e-02	ci left: 4.198204e-02	ci right 4.283500e-02	k: 36470	n:860000
SEMA3C   860000 perm   509 sec   (1690 perm/sec)   p_kst 4.240698e-02   p_cons 1.741860e-03   p_joint 9.032558e-03

Joint ci ratio: 4.400967e-02	ci left: 8.837857e-03	ci right 9.236687e-03	k: 7861	n:870000
Cons ci ratio: 1.006239e-01	ci left: 1.653736e-03	ci right 1.830068e-03	k: 1514	n:870000
KS ci ratio: 1.997009e-02	ci left: 4.198669e-02	ci right 4.283475e-02	k: 36896	n:870000
SEMA3C   870000 perm   518 sec   (1678 perm/sec)   p_kst 4.240920e-02   p_cons 1.740230e-03   p_joint 9.035632e-03

Joint ci ratio: 4.393308e-02	ci left: 8.768888e-03	ci right 9.163900e-03	k: 7889	n:880000
Cons ci ratio: 1.000640e-01	ci left: 1.653777e-03	ci right 1.829074e-03	k: 1531	n:880000
KS ci ratio: 1.985300e-02	ci left: 4.200256e-02	ci right 4.284591e-02	k: 37332	n:880000
SEMA3C   880000 perm   528 sec   (1665 perm/sec)   p_kst 4.242273e-02   p_cons 1.739773e-03   p_joint 8.964773e-03

Joint ci ratio: 4.347620e-02	ci left: 8.854848e-03	ci right 9.249481e-03	k: 8055	n:890000
Cons ci ratio: 9.957788e-02	ci left: 1.651628e-03	ci right 1.825797e-03	k: 1546	n:890000
KS ci ratio: 1.974886e-02	ci left: 4.197335e-02	ci right 4.281165e-02	k: 37728	n:890000
SEMA3C   890000 perm   538 sec   (1653 perm/sec)   p_kst 4.239101e-02   p_cons 1.737079e-03   p_joint 9.050562e-03

Outputting figure to mutsig2_images.part000000000154/SEMA3C.6_2324_890000_0.042391_0.0017371_0.0090506.png
                gene_name: SEMA3C
               theta_stop: 0.100 
                    nperm: 890000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.0017 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0018 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0089 
    ci_joint_bounds_right: 0.0092 

Current progress: 32 percent done.
SEMA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
SEMA3E   10000 perm   2 sec   (4793 perm/sec)   p_kst 9.754000e-01   p_cons 3.899000e-01   p_joint 7.391000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3E.6_2396_10000_0.9754_0.3899_0.7391.png
                gene_name: SEMA3E
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 33 percent done.
SEC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
Cons ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
SEC16A   10000 perm   3 sec   (3326 perm/sec)   p_kst 3.320000e-01   p_cons 8.442000e-01   p_joint 4.770000e-01

Outputting figure to mutsig2_images.part000000000154/SEC16A.5_7194_10000_0.332_0.8442_0.477.png
                gene_name: SEC16A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
SEC22B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
Cons ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
KS ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
SEC22B   10000 perm   2 sec   (6121 perm/sec)   p_kst 5.857000e-01   p_cons 7.427000e-01   p_joint 7.622000e-01

Outputting figure to mutsig2_images.part000000000154/SEC22B.5_668_10000_0.5857_0.7427_0.7622.png
                gene_name: SEC22B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 37 percent done.
SEC23IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
Cons ci ratio: 5.666090e-02	ci left: 3.144328e-01	ci right 3.328701e-01	k: 3236	n:10000
KS ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
SEC23IP   10000 perm   2 sec   (4935 perm/sec)   p_kst 9.279000e-01   p_cons 3.236000e-01   p_joint 7.797000e-01

Outputting figure to mutsig2_images.part000000000154/SEC23IP.5_3075_10000_0.9279_0.3236_0.7797.png
                gene_name: SEC23IP
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 38 percent done.
SEC24B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
Cons ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
KS ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
SEC24B   10000 perm   2 sec   (4464 perm/sec)   p_kst 2.384000e-01   p_cons 7.720000e-02   p_joint 1.944000e-01

Joint ci ratio: 6.806409e-02	ci left: 1.373869e-01	ci right 1.471173e-01	k: 2844	n:20000
Cons ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KS ci ratio: 4.942675e-02	ci left: 2.333010e-01	ci right 2.451749e-01	k: 4784	n:20000
SEC24B   20000 perm   5 sec   (3985 perm/sec)   p_kst 2.392000e-01   p_cons 7.600000e-02   p_joint 1.422000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24B.5_3903_20000_0.2392_0.076_0.1422.png
                gene_name: SEC24B
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 40 percent done.
SEC61A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
Cons ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
KS ci ratio: 2.783921e-02	ci left: 6.553502e-01	ci right 6.739538e-01	k: 6647	n:10000
SEC61A2   10000 perm   2 sec   (5753 perm/sec)   p_kst 6.647000e-01   p_cons 3.846000e-01   p_joint 7.625000e-01

Outputting figure to mutsig2_images.part000000000154/SEC61A2.5_1553_10000_0.6647_0.3846_0.7625.png
                gene_name: SEC61A2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 41 percent done.
SECISBP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
Cons ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
KS ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
SECISBP2L   10000 perm   2 sec   (4692 perm/sec)   p_kst 4.638000e-01   p_cons 2.695000e-01   p_joint 5.639000e-01

Outputting figure to mutsig2_images.part000000000154/SECISBP2L.5_3239_10000_0.4638_0.2695_0.5639.png
                gene_name: SECISBP2L
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 43 percent done.
SEL1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.212254e-02	ci left: 1.461923e-01	ci right 1.604103e-01	k: 1532	n:10000
Cons ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
KS ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
SEL1L3   10000 perm   2 sec   (4589 perm/sec)   p_kst 1.866000e-01   p_cons 1.185000e-01   p_joint 1.532000e-01

Joint ci ratio: 5.355157e-02	ci left: 2.056101e-01	ci right 2.169740e-01	k: 4225	n:20000
Cons ci ratio: 7.220088e-02	ci left: 1.237929e-01	ci right 1.331154e-01	k: 2568	n:20000
KS ci ratio: 5.821652e-02	ci left: 1.793925e-01	ci right 1.901993e-01	k: 3695	n:20000
SEL1L3   20000 perm   5 sec   (4136 perm/sec)   p_kst 1.847500e-01   p_cons 1.284000e-01   p_joint 2.112500e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L3.5_3495_20000_0.18475_0.1284_0.21125.png
                gene_name: SEL1L3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 44 percent done.
SEMA4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
Cons ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
KS ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
SEMA4D   10000 perm   2 sec   (4559 perm/sec)   p_kst 2.099000e-01   p_cons 8.052000e-01   p_joint 3.938000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4D.5_3215_10000_0.2099_0.8052_0.3938.png
                gene_name: SEMA4D
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 46 percent done.
SEMA4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
Cons ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
KS ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
SEMA4F   10000 perm   2 sec   (5656 perm/sec)   p_kst 1.327000e-01   p_cons 3.670000e-01   p_joint 1.401000e-01

Joint ci ratio: 5.534138e-02	ci left: 1.949700e-01	ci right 2.061172e-01	k: 4010	n:20000
Cons ci ratio: 3.646613e-02	ci left: 3.594682e-01	ci right 3.728707e-01	k: 7323	n:20000
KS ci ratio: 7.192808e-02	ci left: 1.246298e-01	ci right 1.339783e-01	k: 2585	n:20000
SEMA4F   20000 perm   4 sec   (4992 perm/sec)   p_kst 1.292500e-01   p_cons 3.661500e-01   p_joint 2.005000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4F.5_2369_20000_0.12925_0.36615_0.2005.png
                gene_name: SEMA4F
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 48 percent done.
SEMA6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
Cons ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
SEMA6B   10000 perm   2 sec   (4886 perm/sec)   p_kst 1.148000e-01   p_cons 3.359000e-01   p_joint 2.125000e-01

Joint ci ratio: 4.781198e-02	ci left: 2.454984e-01	ci right 2.575739e-01	k: 5030	n:20000
Cons ci ratio: 3.893980e-02	ci left: 3.297018e-01	ci right 3.428458e-01	k: 6725	n:20000
KS ci ratio: 7.761917e-02	ci left: 1.086930e-01	ci right 1.175199e-01	k: 2261	n:20000
SEMA6B   20000 perm   5 sec   (4405 perm/sec)   p_kst 1.130500e-01   p_cons 3.362500e-01   p_joint 2.515000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6B.5_2731_20000_0.11305_0.33625_0.2515.png
                gene_name: SEMA6B
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 49 percent done.
SEMG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
SEMG1   10000 perm   2 sec   (5431 perm/sec)   p_kst 2.696000e-01   p_cons 6.575000e-01   p_joint 3.934000e-01

Outputting figure to mutsig2_images.part000000000154/SEMG1.5_1397_10000_0.2696_0.6575_0.3934.png
                gene_name: SEMG1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 51 percent done.
SENP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
Cons ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
KS ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
SENP6   10000 perm   2 sec   (4816 perm/sec)   p_kst 4.976000e-01   p_cons 1.242000e-01   p_joint 4.502000e-01

Joint ci ratio: 4.373180e-02	ci left: 2.802900e-01	ci right 2.928721e-01	k: 5731	n:20000
Cons ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
KS ci ratio: 2.788329e-02	ci left: 4.900465e-01	ci right 5.039544e-01	k: 9940	n:20000
SENP6   20000 perm   5 sec   (4307 perm/sec)   p_kst 4.970000e-01   p_cons 1.216000e-01   p_joint 2.865500e-01

Outputting figure to mutsig2_images.part000000000154/SENP6.5_3435_20000_0.497_0.1216_0.28655.png
                gene_name: SENP6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 52 percent done.
SEPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.884176e-02	ci left: 1.903270e-01	ci right 2.060492e-01	k: 1981	n:10000
Cons ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
KS ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
SEPT1   10000 perm   2 sec   (5724 perm/sec)   p_kst 6.330000e-02   p_cons 9.557000e-01   p_joint 1.981000e-01

Joint ci ratio: 4.959707e-02	ci left: 2.320618e-01	ci right 2.439144e-01	k: 4759	n:20000
Cons ci ratio: 5.795854e-03	ci left: 9.552824e-01	ci right 9.608834e-01	k: 19163	n:20000
KS ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
SEPT1   20000 perm   4 sec   (5072 perm/sec)   p_kst 6.105000e-02   p_cons 9.581500e-01   p_joint 2.379500e-01

Joint ci ratio: 4.937891e-02	ci left: 1.692960e-01	ci right 1.779006e-01	k: 5207	n:30000
Cons ci ratio: 4.669270e-03	ci left: 9.568999e-01	ci right 9.614107e-01	k: 28776	n:30000
KS ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
SEPT1   30000 perm   6 sec   (4833 perm/sec)   p_kst 6.026667e-02   p_cons 9.592000e-01   p_joint 1.735667e-01

Outputting figure to mutsig2_images.part000000000154/SEPT1.5_1148_30000_0.060267_0.9592_0.17357.png
                gene_name: SEPT1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 54 percent done.
SEPT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
SEPT14   10000 perm   2 sec   (6304 perm/sec)   p_kst 9.287000e-01   p_cons 5.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT14.5_1335_10000_0.9287_0.5832_1.png
                gene_name: SEPT14
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
SEPT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
KS ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
SEPT3   10000 perm   2 sec   (5683 perm/sec)   p_kst 9.674000e-01   p_cons 5.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT3.5_1163_10000_0.9674_0.5829_1.png
                gene_name: SEPT3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
SEPT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
SEPT4   10000 perm   2 sec   (5023 perm/sec)   p_kst 7.831000e-01   p_cons 5.363000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT4.5_1577_10000_0.7831_0.5363_1.png
                gene_name: SEPT4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
SEC23A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
SEC23A   10000 perm   2 sec   (5319 perm/sec)   p_kst 7.866000e-01   p_cons 6.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC23A.4_2374_10000_0.7866_0.6961_1.png
                gene_name: SEC23A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SEC61A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
SEC61A1   10000 perm   2 sec   (6195 perm/sec)   p_kst 7.006000e-01   p_cons 5.410000e-02   p_joint 1.087000e-01

Joint ci ratio: 5.959551e-02	ci left: 1.725232e-01	ci right 1.831706e-01	k: 3556	n:20000
Cons ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
KS ci ratio: 1.826878e-02	ci left: 6.907286e-01	ci right 7.035141e-01	k: 13943	n:20000
SEC61A1   20000 perm   4 sec   (5456 perm/sec)   p_kst 6.971500e-01   p_cons 5.565000e-02   p_joint 1.778000e-01

Joint ci ratio: 4.866808e-02	ci left: 1.734551e-01	ci right 1.821407e-01	k: 5333	n:30000
Cons ci ratio: 9.312609e-02	ci left: 5.316386e-02	ci right 5.838925e-02	k: 1672	n:30000
KS ci ratio: 1.482534e-02	ci left: 6.945106e-01	ci right 7.049174e-01	k: 20992	n:30000
SEC61A1   30000 perm   6 sec   (5150 perm/sec)   p_kst 6.997333e-01   p_cons 5.573333e-02   p_joint 1.777667e-01

Outputting figure to mutsig2_images.part000000000154/SEC61A1.4_1479_30000_0.69973_0.055733_0.17777.png
                gene_name: SEC61A1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
SELL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
Cons ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
KS ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
SELL   10000 perm   2 sec   (5948 perm/sec)   p_kst 9.263000e-01   p_cons 4.733000e-01   p_joint 8.419000e-01

Outputting figure to mutsig2_images.part000000000154/SELL.4_1194_10000_0.9263_0.4733_0.8419.png
                gene_name: SELL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 63 percent done.
SEMA3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
Cons ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
KS ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
SEMA3G   10000 perm   2 sec   (5340 perm/sec)   p_kst 4.379000e-01   p_cons 3.701000e-01   p_joint 6.695000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3G.4_2413_10000_0.4379_0.3701_0.6695.png
                gene_name: SEMA3G
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 65 percent done.
SEPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
KS ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
SEPHS1   10000 perm   2 sec   (5930 perm/sec)   p_kst 9.589000e-01   p_cons 2.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPHS1.4_1211_10000_0.9589_0.2655_1.png
                gene_name: SEPHS1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SEC22A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
SEC22A   10000 perm   2 sec   (6209 perm/sec)   p_kst 6.213000e-01   p_cons 8.412000e-01   p_joint 8.830000e-01

Outputting figure to mutsig2_images.part000000000154/SEC22A.3_948_10000_0.6213_0.8412_0.883.png
                gene_name: SEC22A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 68 percent done.
SEL1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
Cons ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
KS ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
SEL1L2   10000 perm   2 sec   (5651 perm/sec)   p_kst 3.730000e-01   p_cons 7.480000e-02   p_joint 1.795000e-01

Joint ci ratio: 4.770430e-02	ci left: 2.463415e-01	ci right 2.584306e-01	k: 5047	n:20000
Cons ci ratio: 9.664763e-02	ci left: 7.231533e-02	ci right 7.970850e-02	k: 1519	n:20000
KS ci ratio: 3.599557e-02	ci left: 3.654946e-01	ci right 3.789425e-01	k: 7444	n:20000
SEL1L2   20000 perm   4 sec   (4947 perm/sec)   p_kst 3.722000e-01   p_cons 7.595000e-02   p_joint 2.523500e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L2.3_2147_20000_0.3722_0.07595_0.25235.png
                gene_name: SEL1L2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 70 percent done.
SELPLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
Cons ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
KS ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
SELPLG   10000 perm   2 sec   (6042 perm/sec)   p_kst 2.613000e-01   p_cons 4.928000e-01   p_joint 3.731000e-01

Outputting figure to mutsig2_images.part000000000154/SELPLG.3_1217_10000_0.2613_0.4928_0.3731.png
                gene_name: SELPLG
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 71 percent done.
SEMA3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.000404e-02	ci left: 7.853299e-01	ci right 8.012989e-01	k: 7934	n:10000
KS ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
SEMA3F   10000 perm   2 sec   (5462 perm/sec)   p_kst 5.988000e-01   p_cons 7.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEMA3F.3_2430_10000_0.5988_0.7934_1.png
                gene_name: SEMA3F
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
SEMA4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
Cons ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
KS ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
SEMA4A   10000 perm   2 sec   (4388 perm/sec)   p_kst 1.873000e-01   p_cons 3.742000e-01   p_joint 3.557000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4A.3_2342_10000_0.1873_0.3742_0.3557.png
                gene_name: SEMA4A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
SEMA4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
SEMA4G   10000 perm   2 sec   (5391 perm/sec)   p_kst 5.015000e-01   p_cons 3.611000e-01   p_joint 7.690000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4G.3_2588_10000_0.5015_0.3611_0.769.png
                gene_name: SEMA4G
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 76 percent done.
SEMG2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.112701e-02	ci left: 9.201785e-01	ci right 9.305721e-01	k: 9255	n:10000
Cons ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
KS ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
SEMG2   10000 perm   2 sec   (6312 perm/sec)   p_kst 7.286000e-01   p_cons 4.881000e-01   p_joint 9.255000e-01

Outputting figure to mutsig2_images.part000000000154/SEMG2.2_1757_10000_0.7286_0.4881_0.9255.png
                gene_name: SEMG2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
SENP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
SENP2   10000 perm   2 sec   (5955 perm/sec)   p_kst 6.001000e-01   p_cons 8.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SENP2.3_1838_10000_0.6001_0.8147_1.png
                gene_name: SENP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SENP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.315665e-02	ci left: 2.692348e-01	ci right 2.868947e-01	k: 2780	n:10000
Cons ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
SENP5   10000 perm   2 sec   (5808 perm/sec)   p_kst 9.790000e-02   p_cons 8.543000e-01   p_joint 2.780000e-01

Joint ci ratio: 4.579791e-02	ci left: 2.619203e-01	ci right 2.742472e-01	k: 5361	n:20000
Cons ci ratio: 1.094426e-02	ci left: 8.603382e-01	ci right 8.698554e-01	k: 17303	n:20000
KS ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
SENP5   20000 perm   4 sec   (4887 perm/sec)   p_kst 9.415000e-02   p_cons 8.651500e-01   p_joint 2.680500e-01

Outputting figure to mutsig2_images.part000000000154/SENP5.3_2304_20000_0.09415_0.86515_0.26805.png
                gene_name: SENP5
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 81 percent done.
SEC62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
Cons ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
KS ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
SEC62   10000 perm   2 sec   (6301 perm/sec)   p_kst 9.322000e-01   p_cons 8.551000e-01   p_joint 9.580000e-01

Outputting figure to mutsig2_images.part000000000154/SEC62.2_1232_10000_0.9322_0.8551_0.958.png
                gene_name: SEC62
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 83 percent done.
SEL1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
KS ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
SEL1L   10000 perm   2 sec   (5160 perm/sec)   p_kst 1.445000e-01   p_cons 6.041000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L.2_2469_10000_0.1445_0.6041_0.5089.png
                gene_name: SEL1L
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 84 percent done.
SELENBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749511e-01	ci left: 4.360497e-02	ci right 5.206094e-02	k: 477	n:10000
Cons ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
KS ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
SELENBP1   10000 perm   2 sec   (6458 perm/sec)   p_kst 7.114000e-01   p_cons 3.190000e-02   p_joint 4.770000e-02

Joint ci ratio: 2.945007e-02	ci left: 4.627630e-01	ci right 4.766458e-01	k: 9394	n:20000
Cons ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
KS ci ratio: 1.773392e-02	ci left: 7.032033e-01	ci right 7.158358e-01	k: 14191	n:20000
SELENBP1   20000 perm   4 sec   (5604 perm/sec)   p_kst 7.095500e-01   p_cons 4.140000e-02   p_joint 4.697000e-01

Joint ci ratio: 1.722488e-02	ci left: 6.277172e-01	ci right 6.386570e-01	k: 18996	n:30000
Cons ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
KS ci ratio: 1.447336e-02	ci left: 7.045604e-01	ci right 7.148656e-01	k: 21292	n:30000
SELENBP1   30000 perm   6 sec   (5315 perm/sec)   p_kst 7.097333e-01   p_cons 4.266667e-02   p_joint 6.332000e-01

Joint ci ratio: 9.745707e-03	ci left: 7.978338e-01	ci right 8.056723e-01	k: 32071	n:40000
Cons ci ratio: 9.283122e-02	ci left: 4.069055e-02	ci right 4.467619e-02	k: 1706	n:40000
KS ci ratio: 1.255742e-02	ci left: 7.044960e-01	ci right 7.134236e-01	k: 28359	n:40000
SELENBP1   40000 perm   8 sec   (4917 perm/sec)   p_kst 7.089750e-01   p_cons 4.265000e-02   p_joint 8.017750e-01

Outputting figure to mutsig2_images.part000000000154/SELENBP1.2_1467_40000_0.70898_0.04265_0.80178.png
                gene_name: SELENBP1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 86 percent done.
SEMA3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
Cons ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
KS ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
SEMA3B   10000 perm   2 sec   (5904 perm/sec)   p_kst 6.660000e-01   p_cons 6.181000e-01   p_joint 7.466000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3B.2_2317_10000_0.666_0.6181_0.7466.png
                gene_name: SEMA3B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 87 percent done.
SEPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
SEPN1   10000 perm   2 sec   (5534 perm/sec)   p_kst 1.080000e-02   p_cons 2.157000e-01   p_joint 4.600000e-02

Joint ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
Cons ci ratio: 5.324817e-02	ci left: 2.074913e-01	ci right 2.188922e-01	k: 4263	n:20000
KS ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
SEPN1   20000 perm   4 sec   (4705 perm/sec)   p_kst 9.150000e-03   p_cons 2.131500e-01   p_joint 5.075000e-02

Joint ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
Cons ci ratio: 4.340381e-02	ci left: 2.091057e-01	ci right 2.184164e-01	k: 6412	n:30000
KS ci ratio: 2.340103e-01	ci left: 8.182088e-03	ci right 1.038119e-02	k: 277	n:30000
SEPN1   30000 perm   6 sec   (4697 perm/sec)   p_kst 9.233333e-03   p_cons 2.137333e-01   p_joint 4.510000e-02

Joint ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
Cons ci ratio: 3.774237e-02	ci left: 2.083755e-01	ci right 2.164163e-01	k: 8495	n:40000
KS ci ratio: 2.006657e-01	ci left: 8.501350e-03	ci right 1.042088e-02	k: 377	n:40000
SEPN1   40000 perm   9 sec   (4649 perm/sec)   p_kst 9.425000e-03   p_cons 2.123750e-01   p_joint 3.542500e-02

Joint ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
Cons ci ratio: 3.381040e-02	ci left: 2.082851e-01	ci right 2.154684e-01	k: 10593	n:50000
KS ci ratio: 1.790038e-01	ci left: 8.649199e-03	ci right 1.036847e-02	k: 474	n:50000
SEPN1   50000 perm   11 sec   (4557 perm/sec)   p_kst 9.480000e-03   p_cons 2.118600e-01   p_joint 7.980000e-03

Joint ci ratio: 2.389148e-01	ci left: 3.933176e-03	ci right 5.015616e-03	k: 267	n:60000
Cons ci ratio: 3.083501e-02	ci left: 2.089175e-01	ci right 2.154770e-01	k: 12731	n:60000
KS ci ratio: 1.632631e-01	ci left: 8.739285e-03	ci right 1.030871e-02	k: 570	n:60000
SEPN1   60000 perm   13 sec   (4484 perm/sec)   p_kst 9.500000e-03   p_cons 2.121833e-01   p_joint 4.450000e-03

Joint ci ratio: 2.217869e-01	ci left: 3.950176e-03	ci right 4.948730e-03	k: 310	n:70000
Cons ci ratio: 2.856966e-02	ci left: 2.089060e-01	ci right 2.149751e-01	k: 14835	n:70000
KS ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
SEPN1   70000 perm   16 sec   (4414 perm/sec)   p_kst 9.628571e-03   p_cons 2.119286e-01   p_joint 4.428571e-03

Joint ci ratio: 2.096752e-01	ci left: 3.893918e-03	ci right 4.817594e-03	k: 347	n:80000
Cons ci ratio: 2.672791e-02	ci left: 2.090600e-01	ci right 2.147359e-01	k: 16951	n:80000
KS ci ratio: 1.424647e-01	ci left: 8.706735e-03	ci right 1.005420e-02	k: 749	n:80000
SEPN1   80000 perm   18 sec   (4326 perm/sec)   p_kst 9.362500e-03   p_cons 2.118875e-01   p_joint 4.337500e-03

Joint ci ratio: 1.988348e-01	ci left: 3.872438e-03	ci right 4.737769e-03	k: 386	n:90000
Cons ci ratio: 2.518508e-02	ci left: 2.094109e-01	ci right 2.147632e-01	k: 19087	n:90000
KS ci ratio: 1.350257e-01	ci left: 8.650978e-03	ci right 9.914288e-03	k: 834	n:90000
SEPN1   90000 perm   21 sec   (4255 perm/sec)   p_kst 9.266667e-03   p_cons 2.120778e-01   p_joint 4.288889e-03

Joint ci ratio: 1.868933e-01	ci left: 3.970606e-03	ci right 4.798546e-03	k: 437	n:100000
Cons ci ratio: 2.386903e-02	ci left: 2.098783e-01	ci right 2.149584e-01	k: 21241	n:100000
KS ci ratio: 1.280812e-01	ci left: 8.685296e-03	ci right 9.883426e-03	k: 927	n:100000
SEPN1   100000 perm   24 sec   (4179 perm/sec)   p_kst 9.270000e-03   p_cons 2.124100e-01   p_joint 4.370000e-03

Joint ci ratio: 1.783446e-01	ci left: 3.982690e-03	ci right 4.771066e-03	k: 480	n:110000
Cons ci ratio: 2.276021e-02	ci left: 2.099679e-01	ci right 2.148109e-01	k: 23362	n:110000
KS ci ratio: 1.218679e-01	ci left: 8.750001e-03	ci right 9.894276e-03	k: 1024	n:110000
SEPN1   110000 perm   27 sec   (4116 perm/sec)   p_kst 9.309091e-03   p_cons 2.123818e-01   p_joint 4.363636e-03

Joint ci ratio: 1.697360e-01	ci left: 4.049335e-03	ci right 4.808254e-03	k: 530	n:120000
Cons ci ratio: 2.173274e-02	ci left: 2.109685e-01	ci right 2.156120e-01	k: 25594	n:120000
KS ci ratio: 1.163222e-01	ci left: 8.829370e-03	ci right 9.927870e-03	k: 1124	n:120000
SEPN1   120000 perm   30 sec   (4042 perm/sec)   p_kst 9.366667e-03   p_cons 2.132833e-01   p_joint 4.416667e-03

Joint ci ratio: 1.628286e-01	ci left: 4.076977e-03	ci right 4.806937e-03	k: 576	n:130000
Cons ci ratio: 2.090551e-02	ci left: 2.106543e-01	ci right 2.151123e-01	k: 27674	n:130000
KS ci ratio: 1.110595e-01	ci left: 8.964847e-03	ci right 1.002644e-02	k: 1233	n:130000
SEPN1   130000 perm   33 sec   (3975 perm/sec)   p_kst 9.484615e-03   p_cons 2.128769e-01   p_joint 4.430769e-03

Joint ci ratio: 1.560732e-01	ci left: 4.135529e-03	ci right 4.842378e-03	k: 627	n:140000
Cons ci ratio: 2.016218e-02	ci left: 2.104521e-01	ci right 2.147455e-01	k: 29763	n:140000
KS ci ratio: 1.067735e-01	ci left: 9.026294e-03	ci right 1.005132e-02	k: 1334	n:140000
SEPN1   140000 perm   36 sec   (3909 perm/sec)   p_kst 9.528571e-03   p_cons 2.125929e-01   p_joint 4.478571e-03

Joint ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
Cons ci ratio: 1.951349e-02	ci left: 2.099272e-01	ci right 2.140706e-01	k: 31799	n:150000
KS ci ratio: 1.037907e-01	ci left: 8.930825e-03	ci right 9.914944e-03	k: 1412	n:150000
SEPN1   150000 perm   39 sec   (3848 perm/sec)   p_kst 9.413333e-03   p_cons 2.119933e-01   p_joint 4.446667e-03

Joint ci ratio: 1.460662e-01	ci left: 4.153834e-03	ci right 4.814320e-03	k: 716	n:160000
Cons ci ratio: 1.890128e-02	ci left: 2.098624e-01	ci right 2.138731e-01	k: 33898	n:160000
KS ci ratio: 1.004008e-01	ci left: 8.963427e-03	ci right 9.916976e-03	k: 1509	n:160000
SEPN1   160000 perm   42 sec   (3786 perm/sec)   p_kst 9.431250e-03   p_cons 2.118625e-01   p_joint 4.475000e-03

Joint ci ratio: 1.415012e-01	ci left: 4.176020e-03	ci right 4.817529e-03	k: 763	n:170000
Cons ci ratio: 1.834718e-02	ci left: 2.097366e-01	ci right 2.136262e-01	k: 35985	n:170000
KS ci ratio: 9.747597e-02	ci left: 8.963952e-03	ci right 9.888188e-03	k: 1601	n:170000
SEPN1   170000 perm   46 sec   (3729 perm/sec)   p_kst 9.417647e-03   p_cons 2.116765e-01   p_joint 4.488235e-03

Joint ci ratio: 1.373390e-01	ci left: 4.196026e-03	ci right 4.820098e-03	k: 810	n:180000
Cons ci ratio: 1.782575e-02	ci left: 2.098756e-01	ci right 2.136559e-01	k: 38117	n:180000
KS ci ratio: 9.456754e-02	ci left: 9.008179e-03	ci right 9.907726e-03	k: 1701	n:180000
SEPN1   180000 perm   49 sec   (3672 perm/sec)   p_kst 9.450000e-03   p_cons 2.117611e-01   p_joint 4.500000e-03

Joint ci ratio: 1.337588e-01	ci left: 4.198909e-03	ci right 4.805836e-03	k: 854	n:190000
Cons ci ratio: 1.737433e-02	ci left: 2.094662e-01	ci right 2.131426e-01	k: 40147	n:190000
KS ci ratio: 9.195635e-02	ci left: 9.037830e-03	ci right 9.914076e-03	k: 1799	n:190000
SEPN1   190000 perm   53 sec   (3614 perm/sec)   p_kst 9.468421e-03   p_cons 2.113000e-01   p_joint 4.494737e-03

Joint ci ratio: 1.311797e-01	ci left: 4.153323e-03	ci right 4.741182e-03	k: 888	n:200000
Cons ci ratio: 1.695375e-02	ci left: 2.091338e-01	ci right 2.127146e-01	k: 42184	n:200000
KS ci ratio: 8.936022e-02	ci left: 9.103936e-03	ci right 9.960370e-03	k: 1905	n:200000
SEPN1   200000 perm   56 sec   (3559 perm/sec)   p_kst 9.525000e-03   p_cons 2.109200e-01   p_joint 4.440000e-03

Joint ci ratio: 1.284649e-01	ci left: 4.130618e-03	ci right 4.702242e-03	k: 926	n:210000
Cons ci ratio: 1.653671e-02	ci left: 2.093467e-01	ci right 2.128422e-01	k: 44329	n:210000
KS ci ratio: 8.761197e-02	ci left: 9.028953e-03	ci right 9.860863e-03	k: 1982	n:210000
SEPN1   210000 perm   60 sec   (3504 perm/sec)   p_kst 9.438095e-03   p_cons 2.110905e-01   p_joint 4.409524e-03

Joint ci ratio: 1.260432e-01	ci left: 4.101286e-03	ci right 4.657351e-03	k: 962	n:220000
Cons ci ratio: 1.616907e-02	ci left: 2.091289e-01	ci right 2.125424e-01	k: 46383	n:220000
KS ci ratio: 8.577348e-02	ci left: 9.000974e-03	ci right 9.812031e-03	k: 2068	n:220000
SEPN1   220000 perm   64 sec   (3452 perm/sec)   p_kst 9.400000e-03   p_cons 2.108318e-01   p_joint 4.372727e-03

Joint ci ratio: 1.232587e-01	ci left: 4.108309e-03	ci right 4.652123e-03	k: 1006	n:230000
Cons ci ratio: 1.580961e-02	ci left: 2.092516e-01	ci right 2.125905e-01	k: 48511	n:230000
KS ci ratio: 8.379130e-02	ci left: 9.030942e-03	ci right 9.824973e-03	k: 2167	n:230000
SEPN1   230000 perm   68 sec   (3397 perm/sec)   p_kst 9.421739e-03   p_cons 2.109174e-01   p_joint 4.373913e-03

Joint ci ratio: 1.212316e-01	ci left: 4.074460e-03	ci right 4.604287e-03	k: 1040	n:240000
Cons ci ratio: 1.545763e-02	ci left: 2.096973e-01	ci right 2.129680e-01	k: 50719	n:240000
KS ci ratio: 8.217869e-02	ci left: 9.005544e-03	ci right 9.781374e-03	k: 2253	n:240000
SEPN1   240000 perm   72 sec   (3347 perm/sec)   p_kst 9.387500e-03   p_cons 2.113292e-01   p_joint 4.333333e-03

Joint ci ratio: 1.186930e-01	ci left: 4.086082e-03	ci right 4.605513e-03	k: 1085	n:250000
Cons ci ratio: 1.513630e-02	ci left: 2.099285e-01	ci right 2.131342e-01	k: 52882	n:250000
KS ci ratio: 8.051691e-02	ci left: 9.013675e-03	ci right 9.773765e-03	k: 2347	n:250000
SEPN1   250000 perm   76 sec   (3299 perm/sec)   p_kst 9.388000e-03   p_cons 2.115280e-01   p_joint 4.340000e-03

Joint ci ratio: 1.159988e-01	ci left: 4.119325e-03	ci right 4.630281e-03	k: 1136	n:260000
Cons ci ratio: 1.483540e-02	ci left: 2.101157e-01	ci right 2.132600e-01	k: 55038	n:260000
KS ci ratio: 7.887055e-02	ci left: 9.040180e-03	ci right 9.786202e-03	k: 2446	n:260000
SEPN1   260000 perm   80 sec   (3250 perm/sec)   p_kst 9.407692e-03   p_cons 2.116846e-01   p_joint 4.369231e-03

Joint ci ratio: 1.141576e-01	ci left: 4.099848e-03	ci right 4.599772e-03	k: 1173	n:270000
Cons ci ratio: 1.455952e-02	ci left: 2.101123e-01	ci right 2.131976e-01	k: 57146	n:270000
KS ci ratio: 7.741337e-02	ci left: 9.043073e-03	ci right 9.774923e-03	k: 2539	n:270000
SEPN1   270000 perm   84 sec   (3205 perm/sec)   p_kst 9.403704e-03   p_cons 2.116519e-01   p_joint 4.344444e-03

Joint ci ratio: 1.124481e-01	ci left: 4.078350e-03	ci right 4.567712e-03	k: 1209	n:280000
Cons ci ratio: 1.429755e-02	ci left: 2.101311e-01	ci right 2.131606e-01	k: 59260	n:280000
KS ci ratio: 7.615094e-02	ci left: 9.017844e-03	ci right 9.735224e-03	k: 2624	n:280000
SEPN1   280000 perm   89 sec   (3159 perm/sec)   p_kst 9.371429e-03   p_cons 2.116429e-01   p_joint 4.317857e-03

Joint ci ratio: 1.105905e-01	ci left: 4.075152e-03	ci right 4.555526e-03	k: 1250	n:290000
Cons ci ratio: 1.405011e-02	ci left: 2.101284e-01	ci right 2.131050e-01	k: 61368	n:290000
KS ci ratio: 7.485081e-02	ci left: 9.018135e-03	ci right 9.722756e-03	k: 2716	n:290000
SEPN1   290000 perm   93 sec   (3117 perm/sec)   p_kst 9.365517e-03   p_cons 2.116138e-01   p_joint 4.310345e-03

Joint ci ratio: 1.089067e-01	ci left: 4.065744e-03	ci right 4.537244e-03	k: 1289	n:300000
Cons ci ratio: 1.382006e-02	ci left: 2.100066e-01	ci right 2.129323e-01	k: 63440	n:300000
KS ci ratio: 7.374769e-02	ci left: 8.985780e-03	ci right 9.677082e-03	k: 2798	n:300000
SEPN1   300000 perm   98 sec   (3075 perm/sec)   p_kst 9.326667e-03   p_cons 2.114667e-01   p_joint 4.296667e-03

Joint ci ratio: 1.070149e-01	ci left: 4.078973e-03	ci right 4.543272e-03	k: 1335	n:310000
Cons ci ratio: 1.358911e-02	ci left: 2.101826e-01	ci right 2.130615e-01	k: 65602	n:310000
KS ci ratio: 7.257760e-02	ci left: 8.984093e-03	ci right 9.663837e-03	k: 2889	n:310000
SEPN1   310000 perm   102 sec   (3034 perm/sec)   p_kst 9.319355e-03   p_cons 2.116194e-01   p_joint 4.306452e-03

Joint ci ratio: 1.053332e-01	ci left: 4.082312e-03	ci right 4.539237e-03	k: 1378	n:320000
Cons ci ratio: 1.336211e-02	ci left: 2.105288e-01	ci right 2.133639e-01	k: 67822	n:320000
KS ci ratio: 7.153419e-02	ci left: 8.964176e-03	ci right 9.632256e-03	k: 2974	n:320000
SEPN1   320000 perm   107 sec   (2993 perm/sec)   p_kst 9.293750e-03   p_cons 2.119437e-01   p_joint 4.306250e-03

Joint ci ratio: 1.033278e-01	ci left: 4.117976e-03	ci right 4.569584e-03	k: 1432	n:330000
Cons ci ratio: 1.315004e-02	ci left: 2.107546e-01	ci right 2.135474e-01	k: 70009	n:330000
KS ci ratio: 7.022249e-02	ci left: 9.025922e-03	ci right 9.685767e-03	k: 3086	n:330000
SEPN1   330000 perm   112 sec   (2955 perm/sec)   p_kst 9.351515e-03   p_cons 2.121485e-01   p_joint 4.339394e-03

Joint ci ratio: 1.020899e-01	ci left: 4.097153e-03	ci right 4.540772e-03	k: 1467	n:340000
Cons ci ratio: 1.294741e-02	ci left: 2.109763e-01	ci right 2.137286e-01	k: 72199	n:340000
KS ci ratio: 6.933129e-02	ci left: 8.991637e-03	ci right 9.640297e-03	k: 3166	n:340000
SEPN1   340000 perm   117 sec   (2918 perm/sec)   p_kst 9.311765e-03   p_cons 2.123500e-01   p_joint 4.314706e-03

Joint ci ratio: 1.009629e-01	ci left: 4.071981e-03	ci right 4.507718e-03	k: 1500	n:350000
Cons ci ratio: 1.276346e-02	ci left: 2.109348e-01	ci right 2.136471e-01	k: 74301	n:350000
KS ci ratio: 6.848381e-02	ci left: 8.956553e-03	ci right 9.594469e-03	k: 3245	n:350000
SEPN1   350000 perm   121 sec   (2881 perm/sec)   p_kst 9.271429e-03   p_cons 2.122886e-01   p_joint 4.285714e-03

Joint ci ratio: 9.980709e-02	ci left: 4.053649e-03	ci right 4.482168e-03	k: 1535	n:360000
Cons ci ratio: 1.258190e-02	ci left: 2.110344e-01	ci right 2.137091e-01	k: 76453	n:360000
KS ci ratio: 6.760512e-02	ci left: 8.939850e-03	ci right 9.568087e-03	k: 3330	n:360000
SEPN1   360000 perm   127 sec   (2845 perm/sec)   p_kst 9.250000e-03   p_cons 2.123694e-01   p_joint 4.263889e-03

Outputting figure to mutsig2_images.part000000000154/SEPN1.2_1825_360000_0.00925_0.21237_0.0042639.png
                gene_name: SEPN1
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.0043 
     ci_joint_bounds_left: 0.0041 
    ci_joint_bounds_right: 0.0045 

Current progress: 89 percent done.
SEPSECS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 2.866778e-02	ci left: 6.420678e-01	ci right 6.608439e-01	k: 6515	n:10000
KS ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
SEPSECS   10000 perm   2 sec   (6280 perm/sec)   p_kst 4.014000e-01   p_cons 6.515000e-01   p_joint 4.405000e-01

Outputting figure to mutsig2_images.part000000000154/SEPSECS.2_1550_10000_0.4014_0.6515_0.4405.png
                gene_name: SEPSECS
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
SEPT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
SEPT10   10000 perm   2 sec   (6396 perm/sec)   p_kst 4.691000e-01   p_cons 9.240000e-02   p_joint 9.740000e-02

Joint ci ratio: 6.842904e-02	ci left: 1.361056e-01	ci right 1.457990e-01	k: 2818	n:20000
Cons ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
KS ci ratio: 2.956263e-02	ci left: 4.608650e-01	ci right 4.747444e-01	k: 9356	n:20000
SEPT10   20000 perm   4 sec   (5583 perm/sec)   p_kst 4.678000e-01   p_cons 9.415000e-02   p_joint 1.409000e-01

Outputting figure to mutsig2_images.part000000000154/SEPT10.2_1409_20000_0.4678_0.09415_0.1409.png
                gene_name: SEPT10
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 92 percent done.
SEPT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SEPT11   10000 perm   2 sec   (6627 perm/sec)   p_kst 1   p_cons 7.156000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT11.2_1330_10000_1_0.7156_1.png
                gene_name: SEPT11
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SEPT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
KS ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
SEPT12   10000 perm   2 sec   (6539 perm/sec)   p_kst 7.810000e-01   p_cons 4.402000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT12.2_1113_10000_0.781_0.4402_1.png
                gene_name: SEPT12
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SEPT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
SEPT5   10000 perm   2 sec   (6450 perm/sec)   p_kst 7.653000e-01   p_cons 1.660000e-02   p_joint 1.399000e-01

Joint ci ratio: 3.882234e-02	ci left: 3.310452e-01	ci right 3.442021e-01	k: 6752	n:20000
Cons ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
KS ci ratio: 1.559352e-02	ci left: 7.536152e-01	ci right 7.655093e-01	k: 15192	n:20000
SEPT5   20000 perm   4 sec   (5693 perm/sec)   p_kst 7.596000e-01   p_cons 4.140000e-02   p_joint 3.376000e-01

Joint ci ratio: 2.611070e-02	ci left: 4.233566e-01	ci right 4.345905e-01	k: 12869	n:30000
Cons ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
KS ci ratio: 1.270186e-02	ci left: 7.555953e-01	ci right 7.652875e-01	k: 22814	n:30000
SEPT5   30000 perm   6 sec   (5382 perm/sec)   p_kst 7.604667e-01   p_cons 4.003333e-02   p_joint 4.289667e-01

Joint ci ratio: 2.254109e-02	ci left: 4.256653e-01	ci right 4.353948e-01	k: 17221	n:40000
Cons ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
KS ci ratio: 1.100819e-02	ci left: 7.559846e-01	ci right 7.643776e-01	k: 30408	n:40000
SEPT5   40000 perm   8 sec   (5219 perm/sec)   p_kst 7.602000e-01   p_cons 3.987500e-02   p_joint 4.305250e-01

Outputting figure to mutsig2_images.part000000000154/SEPT5.2_1158_40000_0.7602_0.039875_0.43052.png
                gene_name: SEPT5
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 97 percent done.
SEPT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
Cons ci ratio: 1.191388e-02	ci left: 9.098768e-01	ci right 9.208798e-01	k: 9155	n:10000
KS ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
SEPT6   10000 perm   2 sec   (6664 perm/sec)   p_kst 5.920000e-02   p_cons 9.155000e-01   p_joint 5.992000e-01

Joint ci ratio: 2.305047e-02	ci left: 5.842988e-01	ci right 5.979747e-01	k: 11823	n:20000
Cons ci ratio: 8.194896e-03	ci left: 9.157963e-01	ci right 9.233812e-01	k: 18393	n:20000
KS ci ratio: 1.073513e-01	ci left: 5.913530e-02	ci right 6.589257e-02	k: 1249	n:20000
SEPT6   20000 perm   3 sec   (5859 perm/sec)   p_kst 6.245000e-02   p_cons 9.196500e-01   p_joint 5.911500e-01

Joint ci ratio: 1.890611e-02	ci left: 5.833740e-01	ci right 5.945421e-01	k: 17669	n:30000
Cons ci ratio: 6.653611e-03	ci left: 9.173474e-01	ci right 9.235042e-01	k: 27614	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
SEPT6   30000 perm   5 sec   (5542 perm/sec)   p_kst 6.316667e-02   p_cons 9.204667e-01   p_joint 5.889667e-01

Outputting figure to mutsig2_images.part000000000154/SEPT6.2_1367_30000_0.063167_0.92047_0.58897.png
                gene_name: SEPT6
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 98 percent done.
SERAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
SERAC1   10000 perm   2 sec   (6097 perm/sec)   p_kst 2.318000e-01   p_cons 6.268000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000154/SERAC1.2_2029_10000_0.2318_0.6268_0.3624.png
                gene_name: SERAC1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000154
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 154 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 4422466: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000155> was used as the working directory.
Started at Wed Oct 24 18:07:21 2012
Results reported at Wed Oct 24 19:25:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000155.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000155.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 155  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000155.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5155.44 sec.
    Max Memory :      5280 MB
    Max Swap   :      7638 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
155
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 155
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 155: processing genes 13933 - 14023
Calculating significance of each gene.
Using projection method.
13933	SERF2	1
13934	SERGEF	9.509155e-01
13935	SERHL2	1
13936	SERINC1	5.820185e-01
13937	SERINC2	8.901345e-01
13938	SERINC3	5.795268e-01
13939	SERINC4	1
13940	SERINC5	6.681347e-01
13941	SERP1	1
13942	SERP2	1
13943	SERPINA1	7.102653e-01
13944	SERPINA10	9.034246e-02
13945	SERPINA11	5.448752e-01
13946	SERPINA12	1.562344e-01
13947	SERPINA3	3.126120e-02
13948	SERPINA4	1.189788e-02
13949	SERPINA5	5.548141e-01
13950	SERPINA6	3.536098e-01
13951	SERPINA7	3.678280e-01
13952	SERPINA9	9.298271e-02
13953	SERPINB1	1
13954	SERPINB10	1
13955	SERPINB11	8.485508e-02
13956	SERPINB12	4.181967e-01
13957	SERPINB13	2.116294e-04
13958	SERPINB2	8.170323e-02
13959	SERPINB3	8.999097e-02
13960	SERPINB4	3.036608e-07
13961	SERPINB5	6.088666e-03
13962	SERPINB6	6.643283e-01
13963	SERPINB7	1.486864e-03
13964	SERPINB8	1.066526e-01
13965	SERPINB9	6.307426e-01
13966	SERPINC1	1.244463e-01
13967	SERPIND1	9.532463e-01
13968	SERPINE1	6.198598e-02
13969	SERPINE2	2.276608e-01
13970	SERPINE3	8.817483e-01
13971	SERPINF1	9.491662e-01
13972	SERPINF2	1
13973	SERPING1	8.658397e-01
13974	SERPINH1	7.945499e-01
13975	SERPINI1	6.910968e-01
13976	SERPINI2	5.026193e-03
13977	SERTAD1	1
13978	SERTAD2	3.352043e-01
13979	SERTAD3	2.494118e-01
13980	SERTAD4	9.000557e-01
13981	SESN1	1
13982	SESN2	8.585041e-01
13983	SESN3	1
13984	SESTD1	1.210020e-01
13985	SET	5.595349e-01
13986	SETBP1	5.098628e-01
13987	SETD1A	9.952788e-01
In gene SETD2 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 6383    n = 1	mu =   3.35e-07
13988	SETD2	4.889110e-03
13989	SETD3	4.533394e-01
In gene SETD4 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 1385    n = 1	mu =   5.69e-07
13990	SETD4	1.523642e-01
13991	SETD5	9.983923e-01
13992	SETD6	5.049079e-01
13993	SETD7	7.595708e-01
13994	SETD8	6.555061e-01
13995	SETDB1	1
13996	SETDB2	8.355797e-01
13997	SETMAR	6.249846e-01
13998	SETX	9.999953e-01
13999	SEZ6	9.525404e-01
14000/18094 14000	SEZ6L	4.096313e-01
14001	SEZ6L2	9.250283e-02
In gene SF1 the following bins exceed PROBCAP:
    LUAD-64-1680-TP	categ 6	N = 1909    n = 1	mu =   5.35e-07
14002	SF1	1.200303e-01
14003	SF3A1	4.761139e-01
14004	SF3A2	1
14005	SF3A3	8.724353e-01
14006	SF3B1	1
14007	SF3B14	1
14008	SF3B2	4.275864e-01
14009	SF3B3	9.974464e-01
14010	SF3B4	3.426168e-02
14011	SF3B5	1.124313e-01
14012	SF4	2.457041e-01
14013	SFI1	9.840817e-01
14014	SFMBT1	8.719068e-01
14015	SFMBT2	2.774513e-01
14016	SFN	1
14017	SFPQ	6.537067e-01
14018	SFRP1	6.819086e-01
14019	SFRP2	6.208101e-01
14020	SFRP4	8.603544e-01
14021	SFRP5	8.316544e-01
14022	SFRS1	6.250019e-01
14023	SFRS11	4.845299e-01
Done

Running MutSig 2:
Scatter job 155: processing genes 13933 - 14023
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SETBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
Cons ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
KS ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
SETBP1   10000 perm   3 sec   (2890 perm/sec)   p_kst 3.908000e-01   p_cons 1.295000e-01   p_joint 3.468000e-01

Joint ci ratio: 4.951517e-02	ci left: 2.326567e-01	ci right 2.445194e-01	k: 4771	n:20000
Cons ci ratio: 6.923156e-02	ci left: 1.333464e-01	ci right 1.429590e-01	k: 2762	n:20000
KS ci ratio: 3.331673e-02	ci left: 4.021749e-01	ci right 4.158516e-01	k: 8180	n:20000
SETBP1   20000 perm   10 sec   (1924 perm/sec)   p_kst 4.090000e-01   p_cons 1.381000e-01   p_joint 2.385500e-01

Outputting figure to mutsig2_images.part000000000155/SETBP1.33_5004_20000_0.409_0.1381_0.23855.png
                gene_name: SETBP1
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
SETD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
SETD2   10000 perm   4 sec   (2484 perm/sec)   p_kst 1.600000e-03   p_cons 6.140000e-02   p_joint 1.050000e-02

Joint ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
Cons ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
SETD2   20000 perm   9 sec   (2335 perm/sec)   p_kst 1.850000e-03   p_cons 6.065000e-02   p_joint 3.100000e-03

Joint ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
Cons ci ratio: 8.856300e-02	ci left: 5.857883e-02	ci right 6.403984e-02	k: 1838	n:30000
KS ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
SETD2   30000 perm   13 sec   (2278 perm/sec)   p_kst 1.766667e-03   p_cons 6.126667e-02   p_joint 3.133333e-03

Joint ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
Cons ci ratio: 7.599074e-02	ci left: 5.999983e-02	ci right 6.476394e-02	k: 2494	n:40000
KS ci ratio: 4.749597e-01	ci left: 1.298331e-03	ci right 2.126710e-03	k: 67	n:40000
SETD2   40000 perm   18 sec   (2237 perm/sec)   p_kst 1.675000e-03   p_cons 6.235000e-02   p_joint 2.425000e-03

Joint ci ratio: 3.803365e-01	ci left: 1.717903e-03	ci right 2.541616e-03	k: 105	n:50000
Cons ci ratio: 6.808190e-02	ci left: 6.005914e-02	ci right 6.431187e-02	k: 3108	n:50000
KS ci ratio: 4.325322e-01	ci left: 1.286716e-03	ci right 2.013116e-03	k: 81	n:50000
SETD2   50000 perm   23 sec   (2205 perm/sec)   p_kst 1.620000e-03   p_cons 6.216000e-02   p_joint 2.100000e-03

Joint ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
Cons ci ratio: 6.266934e-02	ci left: 5.929499e-02	ci right 6.314759e-02	k: 3672	n:60000
KS ci ratio: 3.997598e-01	ci left: 1.281194e-03	ci right 1.935202e-03	k: 95	n:60000
SETD2   60000 perm   28 sec   (2180 perm/sec)   p_kst 1.583333e-03   p_cons 6.120000e-02   p_joint 1.500000e-03

Joint ci ratio: 2.541981e-01	ci left: 2.955574e-03	ci right 3.829249e-03	k: 236	n:70000
Cons ci ratio: 5.771396e-02	ci left: 6.004136e-02	ci right 6.362364e-02	k: 4327	n:70000
KS ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
SETD2   70000 perm   32 sec   (2156 perm/sec)   p_kst 1.571429e-03   p_cons 6.181429e-02   p_joint 3.371429e-03

Joint ci ratio: 2.475333e-01	ci left: 2.738372e-03	ci right 3.523346e-03	k: 249	n:80000
Cons ci ratio: 5.394168e-02	ci left: 6.025217e-02	ci right 6.360469e-02	k: 4953	n:80000
KS ci ratio: 3.517513e-01	ci left: 1.277971e-03	ci right 1.834183e-03	k: 123	n:80000
SETD2   80000 perm   37 sec   (2136 perm/sec)   p_kst 1.537500e-03   p_cons 6.191250e-02   p_joint 3.112500e-03

Joint ci ratio: 2.390940e-01	ci left: 2.621898e-03	ci right 3.344061e-03	k: 267	n:90000
Cons ci ratio: 5.069331e-02	ci left: 6.071852e-02	ci right 6.388755e-02	k: 5606	n:90000
KS ci ratio: 3.409400e-01	ci left: 1.217125e-03	ci right 1.726987e-03	k: 131	n:90000
SETD2   90000 perm   43 sec   (2114 perm/sec)   p_kst 1.455556e-03   p_cons 6.228889e-02   p_joint 2.966667e-03

Joint ci ratio: 2.432601e-01	ci left: 2.275095e-03	ci right 2.914300e-03	k: 258	n:100000
Cons ci ratio: 4.813726e-02	ci left: 6.069102e-02	ci right 6.369444e-02	k: 6218	n:100000
KS ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
SETD2   100000 perm   48 sec   (2096 perm/sec)   p_kst 1.510000e-03   p_cons 6.218000e-02   p_joint 2.580000e-03

Joint ci ratio: 2.471446e-01	ci left: 1.999973e-03	ci right 2.572230e-03	k: 250	n:110000
Cons ci ratio: 4.596124e-02	ci left: 6.059989e-02	ci right 6.345962e-02	k: 6822	n:110000
KS ci ratio: 3.022022e-01	ci left: 1.296790e-03	ci right 1.766485e-03	k: 167	n:110000
SETD2   110000 perm   53 sec   (2077 perm/sec)   p_kst 1.518182e-03   p_cons 6.201818e-02   p_joint 2.272727e-03

Joint ci ratio: 2.419129e-01	ci left: 1.919349e-03	ci right 2.455164e-03	k: 261	n:120000
Cons ci ratio: 4.408757e-02	ci left: 6.044405e-02	ci right 6.317717e-02	k: 7416	n:120000
KS ci ratio: 2.961068e-01	ci left: 1.242674e-03	ci right 1.681985e-03	k: 174	n:120000
SETD2   120000 perm   58 sec   (2057 perm/sec)   p_kst 1.450000e-03   p_cons 6.180000e-02   p_joint 2.175000e-03

Joint ci ratio: 3.504455e-01	ci left: 7.934205e-04	ci right 1.137160e-03	k: 124	n:130000
Cons ci ratio: 4.343123e-02	ci left: 5.768708e-02	ci right 6.025571e-02	k: 7665	n:130000
KS ci ratio: 2.826916e-01	ci left: 1.268369e-03	ci right 1.692829e-03	k: 191	n:130000
SETD2   130000 perm   64 sec   (2037 perm/sec)   p_kst 1.469231e-03   p_cons 5.896154e-02   p_joint 9.538462e-04

Joint ci ratio: 3.384731e-01	ci left: 7.954738e-04	ci right 1.125758e-03	k: 133	n:140000
Cons ci ratio: 4.198040e-02	ci left: 5.739647e-02	ci right 5.986471e-02	k: 8207	n:140000
KS ci ratio: 2.709486e-01	ci left: 1.290777e-03	ci right 1.701743e-03	k: 208	n:140000
SETD2   140000 perm   69 sec   (2018 perm/sec)   p_kst 1.485714e-03   p_cons 5.862143e-02   p_joint 9.500000e-04

Joint ci ratio: 3.323349e-01	ci left: 7.729670e-04	ci right 1.086841e-03	k: 138	n:150000
Cons ci ratio: 4.066580e-02	ci left: 5.714587e-02	ci right 5.952457e-02	k: 8749	n:150000
KS ci ratio: 2.611364e-01	ci left: 1.304281e-03	ci right 1.702055e-03	k: 224	n:150000
SETD2   150000 perm   75 sec   (1998 perm/sec)   p_kst 1.493333e-03   p_cons 5.832667e-02   p_joint 9.200000e-04

Joint ci ratio: 3.265186e-01	ci left: 7.533210e-04	ci right 1.052741e-03	k: 143	n:160000
Cons ci ratio: 3.938870e-02	ci left: 5.714440e-02	ci right 5.944663e-02	k: 9326	n:160000
KS ci ratio: 2.512763e-01	ci left: 1.328044e-03	ci right 1.715380e-03	k: 242	n:160000
SETD2   160000 perm   81 sec   (1981 perm/sec)   p_kst 1.512500e-03   p_cons 5.828750e-02   p_joint 8.937500e-04

Joint ci ratio: 2.392626e-01	ci left: 1.387954e-03	ci right 1.770543e-03	k: 267	n:170000
Cons ci ratio: 3.658920e-02	ci left: 6.208868e-02	ci right 6.440860e-02	k: 10751	n:170000
KS ci ratio: 2.424549e-01	ci left: 1.349259e-03	ci right 1.726891e-03	k: 260	n:170000
SETD2   170000 perm   87 sec   (1965 perm/sec)   p_kst 1.529412e-03   p_cons 6.324118e-02   p_joint 1.570588e-03

Joint ci ratio: 2.375046e-01	ci left: 1.331736e-03	ci right 1.695733e-03	k: 271	n:180000
Cons ci ratio: 3.551582e-02	ci left: 6.226200e-02	ci right 6.451875e-02	k: 11409	n:180000
KS ci ratio: 2.353480e-01	ci left: 1.357870e-03	ci right 1.725150e-03	k: 276	n:180000
SETD2   180000 perm   92 sec   (1949 perm/sec)   p_kst 1.533333e-03   p_cons 6.338333e-02   p_joint 1.505556e-03

Joint ci ratio: 2.448342e-01	ci left: 1.182510e-03	ci right 1.517212e-03	k: 255	n:190000
Cons ci ratio: 3.457453e-02	ci left: 6.227179e-02	ci right 6.446787e-02	k: 12039	n:190000
KS ci ratio: 2.284415e-01	ci left: 1.370681e-03	ci right 1.729013e-03	k: 293	n:190000
SETD2   190000 perm   98 sec   (1932 perm/sec)   p_kst 1.542105e-03   p_cons 6.336316e-02   p_joint 1.342105e-03

Joint ci ratio: 2.388452e-01	ci left: 1.184446e-03	ci right 1.510282e-03	k: 268	n:200000
Cons ci ratio: 3.368445e-02	ci left: 6.235076e-02	ci right 6.449192e-02	k: 12683	n:200000
KS ci ratio: 2.224679e-01	ci left: 1.377630e-03	ci right 1.727072e-03	k: 309	n:200000
SETD2   200000 perm   104 sec   (1916 perm/sec)   p_kst 1.545000e-03   p_cons 6.341500e-02   p_joint 1.340000e-03

Joint ci ratio: 2.257825e-01	ci left: 1.271570e-03	ci right 1.599583e-03	k: 300	n:210000
Cons ci ratio: 3.433023e-02	ci left: 5.745273e-02	ci right 5.946424e-02	k: 12275	n:210000
KS ci ratio: 2.179463e-01	ci left: 1.370519e-03	ci right 1.710145e-03	k: 322	n:210000
SETD2   210000 perm   110 sec   (1902 perm/sec)   p_kst 1.533333e-03   p_cons 5.845238e-02   p_joint 1.428571e-03

Joint ci ratio: 2.420336e-01	ci left: 1.046859e-03	ci right 1.339266e-03	k: 261	n:220000
Cons ci ratio: 3.347680e-02	ci left: 5.768522e-02	ci right 5.965370e-02	k: 12906	n:220000
KS ci ratio: 2.136897e-01	ci left: 1.364119e-03	ci right 1.694692e-03	k: 335	n:220000
SETD2   220000 perm   117 sec   (1888 perm/sec)   p_kst 1.522727e-03   p_cons 5.866364e-02   p_joint 1.186364e-03

Joint ci ratio: 1.993548e-01	ci left: 1.510983e-03	ci right 1.849600e-03	k: 385	n:230000
Cons ci ratio: 3.269039e-02	ci left: 5.787648e-02	ci right 5.980422e-02	k: 13532	n:230000
KS ci ratio: 2.061534e-01	ci left: 1.407796e-03	ci right 1.735405e-03	k: 360	n:230000
SETD2   230000 perm   123 sec   (1873 perm/sec)   p_kst 1.565217e-03   p_cons 5.883478e-02   p_joint 1.673913e-03

Joint ci ratio: 2.009321e-01	ci left: 1.424272e-03	ci right 1.746291e-03	k: 379	n:240000
Cons ci ratio: 3.201100e-02	ci left: 5.786621e-02	ci right 5.975280e-02	k: 14113	n:240000
KS ci ratio: 2.004046e-01	ci left: 1.432187e-03	ci right 1.755042e-03	k: 381	n:240000
SETD2   240000 perm   129 sec   (1857 perm/sec)   p_kst 1.587500e-03   p_cons 5.880417e-02   p_joint 1.579167e-03

Joint ci ratio: 1.980874e-01	ci left: 1.409102e-03	ci right 1.722636e-03	k: 390	n:250000
Cons ci ratio: 3.136321e-02	ci left: 5.788890e-02	ci right 5.973735e-02	k: 14702	n:250000
KS ci ratio: 1.970803e-01	ci left: 1.424311e-03	ci right 1.739425e-03	k: 394	n:250000
SETD2   250000 perm   136 sec   (1843 perm/sec)   p_kst 1.576000e-03   p_cons 5.880800e-02   p_joint 1.560000e-03

Joint ci ratio: 1.943940e-01	ci left: 1.409763e-03	ci right 1.716904e-03	k: 405	n:260000
Cons ci ratio: 3.076712e-02	ci left: 5.786056e-02	ci right 5.967237e-02	k: 15278	n:260000
KS ci ratio: 1.925037e-01	ci left: 1.439044e-03	ci right 1.749159e-03	k: 413	n:260000
SETD2   260000 perm   142 sec   (1828 perm/sec)   p_kst 1.588462e-03   p_cons 5.876154e-02   p_joint 1.557692e-03

Joint ci ratio: 1.780217e-01	ci left: 1.633014e-03	ci right 1.955609e-03	k: 483	n:270000
Cons ci ratio: 3.021491e-02	ci left: 5.779418e-02	ci right 5.957086e-02	k: 15843	n:270000
KS ci ratio: 1.891086e-01	ci left: 1.438648e-03	ci right 1.742582e-03	k: 428	n:270000
SETD2   270000 perm   149 sec   (1814 perm/sec)   p_kst 1.585185e-03   p_cons 5.867778e-02   p_joint 1.788889e-03

Joint ci ratio: 1.778435e-01	ci left: 1.578100e-03	ci right 1.889501e-03	k: 484	n:280000
Cons ci ratio: 2.964058e-02	ci left: 5.792078e-02	ci right 5.966694e-02	k: 16461	n:280000
KS ci ratio: 1.852613e-01	ci left: 1.448542e-03	ci right 1.747640e-03	k: 446	n:280000
SETD2   280000 perm   155 sec   (1801 perm/sec)   p_kst 1.592857e-03   p_cons 5.878929e-02   p_joint 1.728571e-03

Joint ci ratio: 1.774826e-01	ci left: 1.530270e-03	ci right 1.831553e-03	k: 486	n:290000
Cons ci ratio: 2.917137e-02	ci left: 5.776155e-02	ci right 5.947487e-02	k: 16998	n:290000
KS ci ratio: 1.824271e-01	ci left: 1.444646e-03	ci right 1.737872e-03	k: 460	n:290000
SETD2   290000 perm   162 sec   (1788 perm/sec)   p_kst 1.586207e-03   p_cons 5.861379e-02   p_joint 1.675862e-03

Joint ci ratio: 1.749861e-01	ci left: 1.523868e-03	ci right 1.819225e-03	k: 500	n:300000
Cons ci ratio: 2.869161e-02	ci left: 5.773564e-02	ci right 5.941957e-02	k: 17572	n:300000
KS ci ratio: 1.802903e-01	ci left: 1.431493e-03	ci right 1.718274e-03	k: 471	n:300000
SETD2   300000 perm   169 sec   (1775 perm/sec)   p_kst 1.570000e-03   p_cons 5.857333e-02   p_joint 1.666667e-03

Joint ci ratio: 1.662454e-01	ci left: 1.641479e-03	ci right 1.942151e-03	k: 554	n:310000
Cons ci ratio: 2.865046e-02	ci left: 5.613193e-02	ci right 5.776669e-02	k: 17653	n:310000
KS ci ratio: 1.769473e-01	ci left: 1.440785e-03	ci right 1.723503e-03	k: 489	n:310000
SETD2   310000 perm   176 sec   (1761 perm/sec)   p_kst 1.577419e-03   p_cons 5.694516e-02   p_joint 1.787097e-03

Joint ci ratio: 1.667021e-01	ci left: 1.581194e-03	ci right 1.871698e-03	k: 551	n:320000
Cons ci ratio: 2.820867e-02	ci left: 5.610915e-02	ci right 5.771764e-02	k: 18211	n:320000
KS ci ratio: 1.661003e-01	ci left: 1.593175e-03	ci right 1.884718e-03	k: 555	n:320000
SETD2   320000 perm   183 sec   (1748 perm/sec)   p_kst 1.734375e-03   p_cons 5.690937e-02   p_joint 1.721875e-03

Joint ci ratio: 1.670098e-01	ci left: 1.527468e-03	ci right 1.808671e-03	k: 549	n:330000
Cons ci ratio: 2.776554e-02	ci left: 5.616922e-02	ci right 5.775373e-02	k: 18796	n:330000
KS ci ratio: 1.636179e-01	ci left: 1.594286e-03	ci right 1.881243e-03	k: 572	n:330000
SETD2   330000 perm   190 sec   (1735 perm/sec)   p_kst 1.733333e-03   p_cons 5.695758e-02   p_joint 1.663636e-03

Joint ci ratio: 1.639088e-01	ci left: 1.541751e-03	ci right 1.819794e-03	k: 570	n:340000
Cons ci ratio: 2.737262e-02	ci left: 5.610904e-02	ci right 5.766911e-02	k: 19341	n:340000
KS ci ratio: 1.617939e-01	ci left: 1.584073e-03	ci right 1.865705e-03	k: 585	n:340000
SETD2   340000 perm   197 sec   (1722 perm/sec)   p_kst 1.720588e-03   p_cons 5.688529e-02   p_joint 1.676471e-03

Joint ci ratio: 1.613846e-01	ci left: 1.547037e-03	ci right 1.821320e-03	k: 588	n:350000
Cons ci ratio: 2.698154e-02	ci left: 5.610924e-02	ci right 5.764668e-02	k: 19906	n:350000
KS ci ratio: 1.588386e-01	ci left: 1.599151e-03	ci right 1.877774e-03	k: 607	n:350000
SETD2   350000 perm   205 sec   (1710 perm/sec)   p_kst 1.734286e-03   p_cons 5.687429e-02   p_joint 1.680000e-03

Joint ci ratio: 1.600333e-01	ci left: 1.530723e-03	ci right 1.799623e-03	k: 598	n:360000
Cons ci ratio: 2.662262e-02	ci left: 5.604609e-02	ci right 5.756105e-02	k: 20448	n:360000
KS ci ratio: 1.572951e-01	ci left: 1.586744e-03	ci right 1.860266e-03	k: 619	n:360000
SETD2   360000 perm   212 sec   (1698 perm/sec)   p_kst 1.719444e-03   p_cons 5.680000e-02   p_joint 1.661111e-03

Joint ci ratio: 1.633480e-01	ci left: 1.427105e-03	ci right 1.683505e-03	k: 574	n:370000
Cons ci ratio: 2.624982e-02	ci left: 5.609930e-02	ci right 5.759414e-02	k: 21032	n:370000
KS ci ratio: 1.553043e-01	ci left: 1.585411e-03	ci right 1.854922e-03	k: 635	n:370000
SETD2   370000 perm   219 sec   (1686 perm/sec)   p_kst 1.716216e-03   p_cons 5.684324e-02   p_joint 1.551351e-03

Joint ci ratio: 1.521071e-01	ci left: 1.612011e-03	ci right 1.879889e-03	k: 662	n:380000
Cons ci ratio: 2.588527e-02	ci left: 5.617861e-02	ci right 5.765447e-02	k: 21627	n:380000
KS ci ratio: 1.523375e-01	ci left: 1.606948e-03	ci right 1.874426e-03	k: 660	n:380000
SETD2   380000 perm   227 sec   (1675 perm/sec)   p_kst 1.736842e-03   p_cons 5.691316e-02   p_joint 1.742105e-03

Joint ci ratio: 1.498630e-01	ci left: 1.620023e-03	ci right 1.884904e-03	k: 682	n:390000
Cons ci ratio: 2.554159e-02	ci left: 5.622851e-02	ci right 5.768578e-02	k: 22212	n:390000
KS ci ratio: 1.498630e-01	ci left: 1.620023e-03	ci right 1.884904e-03	k: 682	n:390000
SETD2   390000 perm   234 sec   (1664 perm/sec)   p_kst 1.748718e-03   p_cons 5.695385e-02   p_joint 1.748718e-03

Joint ci ratio: 1.292306e-01	ci left: 2.146657e-03	ci right 2.445626e-03	k: 917	n:400000
Cons ci ratio: 2.520890e-02	ci left: 5.628597e-02	ci right 5.772545e-02	k: 22801	n:400000
KS ci ratio: 1.472962e-01	ci left: 1.637293e-03	ci right 1.900009e-03	k: 706	n:400000
SETD2   400000 perm   242 sec   (1652 perm/sec)   p_kst 1.765000e-03   p_cons 5.700250e-02   p_joint 2.292500e-03

Joint ci ratio: 1.287432e-01	ci left: 2.110819e-03	ci right 2.403603e-03	k: 924	n:410000
Cons ci ratio: 2.490073e-02	ci left: 5.628983e-02	ci right 5.771156e-02	k: 23369	n:410000
KS ci ratio: 1.459613e-01	ci left: 1.627902e-03	ci right 1.886538e-03	k: 719	n:410000
SETD2   410000 perm   250 sec   (1641 perm/sec)   p_kst 1.753659e-03   p_cons 5.699756e-02   p_joint 2.253659e-03

Joint ci ratio: 1.297343e-01	ci left: 2.028300e-03	ci right 2.311971e-03	k: 910	n:420000
Cons ci ratio: 2.460850e-02	ci left: 5.627230e-02	ci right 5.767668e-02	k: 23928	n:420000
KS ci ratio: 1.443663e-01	ci left: 1.625854e-03	ci right 1.881098e-03	k: 735	n:420000
SETD2   420000 perm   258 sec   (1630 perm/sec)   p_kst 1.750000e-03   p_cons 5.697143e-02   p_joint 2.166667e-03

Joint ci ratio: 1.281268e-01	ci left: 2.032894e-03	ci right 2.313417e-03	k: 933	n:430000
Cons ci ratio: 2.433002e-02	ci left: 5.623950e-02	ci right 5.762695e-02	k: 24480	n:430000
KS ci ratio: 1.425379e-01	ci left: 1.630644e-03	ci right 1.883123e-03	k: 754	n:430000
SETD2   430000 perm   266 sec   (1619 perm/sec)   p_kst 1.753488e-03   p_cons 5.693023e-02   p_joint 2.169767e-03

Joint ci ratio: 1.123045e-01	ci left: 2.606247e-03	ci right 2.918540e-03	k: 1214	n:440000
Cons ci ratio: 2.439581e-02	ci left: 5.475072e-02	ci right 5.610514e-02	k: 24387	n:440000
KS ci ratio: 1.407773e-01	ci left: 1.635235e-03	ci right 1.885035e-03	k: 773	n:440000
SETD2   440000 perm   274 sec   (1607 perm/sec)   p_kst 1.756818e-03   p_cons 5.542500e-02   p_joint 2.759091e-03

Joint ci ratio: 1.115737e-01	ci left: 2.582888e-03	ci right 2.890237e-03	k: 1230	n:450000
Cons ci ratio: 2.412234e-02	ci left: 5.476210e-02	ci right 5.610141e-02	k: 24943	n:450000
KS ci ratio: 1.393447e-01	ci left: 1.633206e-03	ci right 1.879946e-03	k: 789	n:450000
SETD2   450000 perm   282 sec   (1596 perm/sec)   p_kst 1.753333e-03   p_cons 5.542889e-02   p_joint 2.733333e-03

Joint ci ratio: 1.104580e-01	ci left: 2.579577e-03	ci right 2.883262e-03	k: 1255	n:460000
Cons ci ratio: 2.386926e-02	ci left: 5.472335e-02	ci right 5.604747e-02	k: 25476	n:460000
KS ci ratio: 1.382129e-01	ci left: 1.624981e-03	ci right 1.868320e-03	k: 802	n:460000
SETD2   460000 perm   290 sec   (1586 perm/sec)   p_kst 1.743478e-03   p_cons 5.538261e-02   p_joint 2.728261e-03

Joint ci ratio: 1.113537e-01	ci left: 2.483313e-03	ci right 2.778191e-03	k: 1235	n:470000
Cons ci ratio: 2.360957e-02	ci left: 5.474979e-02	ci right 5.605995e-02	k: 26039	n:470000
KS ci ratio: 1.361092e-01	ci left: 1.641774e-03	ci right 1.883583e-03	k: 827	n:470000
SETD2   470000 perm   298 sec   (1575 perm/sec)   p_kst 1.759574e-03   p_cons 5.540213e-02   p_joint 2.627660e-03

Joint ci ratio: 1.110867e-01	ci left: 2.443727e-03	ci right 2.733163e-03	k: 1241	n:480000
Cons ci ratio: 2.336004e-02	ci left: 5.476692e-02	ci right 5.606345e-02	k: 26598	n:480000
KS ci ratio: 1.346534e-01	ci left: 1.643801e-03	ci right 1.883111e-03	k: 845	n:480000
SETD2   480000 perm   307 sec   (1564 perm/sec)   p_kst 1.760417e-03   p_cons 5.541250e-02   p_joint 2.585417e-03

Joint ci ratio: 1.111345e-01	ci left: 2.391867e-03	ci right 2.675291e-03	k: 1240	n:490000
Cons ci ratio: 2.312141e-02	ci left: 5.476921e-02	ci right 5.605238e-02	k: 27150	n:490000
KS ci ratio: 1.337092e-01	ci left: 1.633921e-03	ci right 1.869992e-03	k: 857	n:490000
SETD2   490000 perm   315 sec   (1554 perm/sec)   p_kst 1.748980e-03   p_cons 5.540816e-02   p_joint 2.530612e-03

Joint ci ratio: 1.101627e-01	ci left: 2.386811e-03	ci right 2.667003e-03	k: 1262	n:500000
Cons ci ratio: 2.289345e-02	ci left: 5.475557e-02	ci right 5.602559e-02	k: 27694	n:500000
KS ci ratio: 1.326320e-01	ci left: 1.628309e-03	ci right 1.861525e-03	k: 871	n:500000
SETD2   500000 perm   324 sec   (1542 perm/sec)   p_kst 1.742000e-03   p_cons 5.538800e-02   p_joint 2.524000e-03

Joint ci ratio: 1.094725e-01	ci left: 2.370521e-03	ci right 2.646944e-03	k: 1278	n:510000
Cons ci ratio: 2.267678e-02	ci left: 5.472106e-02	ci right 5.597812e-02	k: 28227	n:510000
KS ci ratio: 1.317294e-01	ci left: 1.619132e-03	ci right 1.849332e-03	k: 883	n:510000
SETD2   510000 perm   333 sec   (1532 perm/sec)   p_kst 1.731373e-03   p_cons 5.534706e-02   p_joint 2.505882e-03

Joint ci ratio: 1.215495e-01	ci left: 1.874796e-03	ci right 2.119267e-03	k: 1037	n:520000
Cons ci ratio: 2.245953e-02	ci left: 5.471854e-02	ci right 5.596334e-02	k: 28776	n:520000
KS ci ratio: 1.303360e-01	ci left: 1.623336e-03	ci right 1.851504e-03	k: 902	n:520000
SETD2   520000 perm   341 sec   (1523 perm/sec)   p_kst 1.734615e-03   p_cons 5.533846e-02   p_joint 1.994231e-03

Joint ci ratio: 1.202245e-01	ci left: 1.881507e-03	ci right 2.123988e-03	k: 1060	n:530000
Cons ci ratio: 2.224439e-02	ci left: 5.473494e-02	ci right 5.596804e-02	k: 29335	n:530000
KS ci ratio: 1.288459e-01	ci left: 1.631046e-03	ci right 1.857475e-03	k: 923	n:530000
SETD2   530000 perm   350 sec   (1514 perm/sec)   p_kst 1.741509e-03   p_cons 5.534906e-02   p_joint 2.000000e-03

Joint ci ratio: 1.189969e-01	ci left: 1.886186e-03	ci right 2.126614e-03	k: 1082	n:540000
Cons ci ratio: 2.202986e-02	ci left: 5.477658e-02	ci right 5.599856e-02	k: 29908	n:540000
KS ci ratio: 1.274734e-01	ci left: 1.636691e-03	ci right 1.861301e-03	k: 943	n:540000
SETD2   540000 perm   359 sec   (1505 perm/sec)   p_kst 1.746296e-03   p_cons 5.538519e-02   p_joint 2.003704e-03

Joint ci ratio: 1.195534e-01	ci left: 1.834250e-03	ci right 2.069228e-03	k: 1072	n:550000
Cons ci ratio: 2.182331e-02	ci left: 5.480772e-02	ci right 5.601879e-02	k: 30476	n:550000
KS ci ratio: 1.266052e-01	ci left: 1.629818e-03	ci right 1.851847e-03	k: 956	n:550000
SETD2   550000 perm   368 sec   (1495 perm/sec)   p_kst 1.738182e-03   p_cons 5.541091e-02   p_joint 1.949091e-03

Joint ci ratio: 1.184002e-01	ci left: 1.837880e-03	ci right 2.070893e-03	k: 1093	n:560000
Cons ci ratio: 2.163612e-02	ci left: 5.477206e-02	ci right 5.597183e-02	k: 31007	n:560000
KS ci ratio: 1.258194e-01	ci left: 1.621466e-03	ci right 1.840884e-03	k: 968	n:560000
SETD2   560000 perm   377 sec   (1486 perm/sec)   p_kst 1.728571e-03   p_cons 5.536964e-02   p_joint 1.951786e-03

Joint ci ratio: 1.172798e-01	ci left: 1.841392e-03	ci right 2.072488e-03	k: 1114	n:570000
Cons ci ratio: 2.143820e-02	ci left: 5.481275e-02	ci right 5.600230e-02	k: 31581	n:570000
KS ci ratio: 1.250481e-01	ci left: 1.613410e-03	ci right 1.830301e-03	k: 980	n:570000
SETD2   570000 perm   387 sec   (1474 perm/sec)   p_kst 1.719298e-03   p_cons 5.540526e-02   p_joint 1.954386e-03

Joint ci ratio: 1.178657e-01	ci left: 1.791234e-03	ci right 2.017236e-03	k: 1103	n:580000
Cons ci ratio: 2.126171e-02	ci left: 5.477318e-02	ci right 5.595196e-02	k: 32109	n:580000
KS ci ratio: 1.240408e-01	ci left: 1.612320e-03	ci right 1.827189e-03	k: 996	n:580000
SETD2   580000 perm   396 sec   (1465 perm/sec)   p_kst 1.717241e-03   p_cons 5.536034e-02   p_joint 1.901724e-03

Joint ci ratio: 1.167602e-01	ci left: 1.795423e-03	ci right 2.019683e-03	k: 1124	n:590000
Cons ci ratio: 2.107414e-02	ci left: 5.481088e-02	ci right 5.597994e-02	k: 32682	n:590000
KS ci ratio: 1.229966e-01	ci left: 1.612916e-03	ci right 1.825923e-03	k: 1013	n:590000
SETD2   590000 perm   405 sec   (1456 perm/sec)   p_kst 1.716949e-03   p_cons 5.539322e-02   p_joint 1.905085e-03

Joint ci ratio: 1.153329e-01	ci left: 1.810812e-03	ci right 2.034041e-03	k: 1152	n:600000
Cons ci ratio: 2.090809e-02	ci left: 5.476444e-02	ci right 5.592319e-02	k: 33205	n:600000
KS ci ratio: 1.216832e-01	ci left: 1.621579e-03	ci right 1.833279e-03	k: 1035	n:600000
SETD2   600000 perm   414 sec   (1448 perm/sec)   p_kst 1.725000e-03   p_cons 5.534167e-02   p_joint 1.920000e-03

Joint ci ratio: 1.152847e-01	ci left: 1.782717e-03	ci right 2.002384e-03	k: 1153	n:610000
Cons ci ratio: 2.072673e-02	ci left: 5.481581e-02	ci right 5.596547e-02	k: 33787	n:610000
KS ci ratio: 1.207544e-01	ci left: 1.620429e-03	ci right 1.830250e-03	k: 1051	n:610000
SETD2   610000 perm   424 sec   (1439 perm/sec)   p_kst 1.722951e-03   p_cons 5.538852e-02   p_joint 1.890164e-03

Joint ci ratio: 1.168177e-01	ci left: 1.706977e-03	ci right 1.920302e-03	k: 1123	n:620000
Cons ci ratio: 2.056235e-02	ci left: 5.480296e-02	ci right 5.594313e-02	k: 34330	n:620000
KS ci ratio: 1.200721e-01	ci left: 1.613065e-03	ci right 1.820668e-03	k: 1063	n:620000
SETD2   620000 perm   433 sec   (1431 perm/sec)   p_kst 1.714516e-03   p_cons 5.537097e-02   p_joint 1.811290e-03

Joint ci ratio: 1.162509e-01	ci left: 1.696833e-03	ci right 1.907790e-03	k: 1134	n:630000
Cons ci ratio: 2.040492e-02	ci left: 5.477476e-02	ci right 5.590552e-02	k: 34863	n:630000
KS ci ratio: 1.184673e-01	ci left: 1.632120e-03	ci right 1.839171e-03	k: 1092	n:630000
SETD2   630000 perm   443 sec   (1422 perm/sec)   p_kst 1.733333e-03   p_cons 5.533810e-02   p_joint 1.800000e-03

Joint ci ratio: 1.159459e-01	ci left: 1.679422e-03	ci right 1.887629e-03	k: 1140	n:640000
Cons ci ratio: 2.025378e-02	ci left: 5.473348e-02	ci right 5.585492e-02	k: 35387	n:640000
KS ci ratio: 1.177161e-01	ci left: 1.627847e-03	ci right 1.832955e-03	k: 1106	n:640000
SETD2   640000 perm   453 sec   (1414 perm/sec)   p_kst 1.728125e-03   p_cons 5.529219e-02   p_joint 1.781250e-03

Joint ci ratio: 1.151416e-01	ci left: 1.677489e-03	ci right 1.883915e-03	k: 1156	n:650000
Cons ci ratio: 2.009115e-02	ci left: 5.477006e-02	ci right 5.588314e-02	k: 35961	n:650000
KS ci ratio: 1.168226e-01	ci left: 1.628190e-03	ci right 1.831677e-03	k: 1123	n:650000
SETD2   650000 perm   462 sec   (1406 perm/sec)   p_kst 1.727692e-03   p_cons 5.532462e-02   p_joint 1.778462e-03

Joint ci ratio: 1.143050e-01	ci left: 1.677091e-03	ci right 1.881868e-03	k: 1173	n:660000
Cons ci ratio: 1.993237e-02	ci left: 5.480557e-02	ci right 5.591046e-02	k: 36535	n:660000
KS ci ratio: 1.162556e-01	ci left: 1.619701e-03	ci right 1.821077e-03	k: 1134	n:660000
SETD2   660000 perm   472 sec   (1397 perm/sec)   p_kst 1.718182e-03   p_cons 5.535606e-02   p_joint 1.777273e-03

Joint ci ratio: 1.135819e-01	ci left: 1.673809e-03	ci right 1.876806e-03	k: 1188	n:670000
Cons ci ratio: 1.978436e-02	ci left: 5.480291e-02	ci right 5.589945e-02	k: 37084	n:670000
KS ci ratio: 1.155959e-01	ci left: 1.614366e-03	ci right 1.813862e-03	k: 1147	n:670000
SETD2   670000 perm   482 sec   (1389 perm/sec)   p_kst 1.711940e-03   p_cons 5.534925e-02   p_joint 1.773134e-03

Joint ci ratio: 1.126850e-01	ci left: 1.676345e-03	ci right 1.877937e-03	k: 1207	n:680000
Cons ci ratio: 1.964180e-02	ci left: 5.478865e-02	ci right 5.587691e-02	k: 37625	n:680000
KS ci ratio: 1.146017e-01	ci left: 1.619191e-03	ci right 1.817446e-03	k: 1167	n:680000
SETD2   680000 perm   492 sec   (1381 perm/sec)   p_kst 1.716176e-03   p_cons 5.533088e-02   p_joint 1.775000e-03

Joint ci ratio: 1.119921e-01	ci left: 1.673178e-03	ci right 1.873071e-03	k: 1222	n:690000
Cons ci ratio: 1.950066e-02	ci left: 5.478348e-02	ci right 5.586374e-02	k: 38172	n:690000
KS ci ratio: 1.134893e-01	ci left: 1.628107e-03	ci right 1.825389e-03	k: 1190	n:690000
SETD2   690000 perm   503 sec   (1373 perm/sec)   p_kst 1.724638e-03   p_cons 5.532174e-02   p_joint 1.771014e-03

Joint ci ratio: 1.120853e-01	ci left: 1.646497e-03	ci right 1.843377e-03	k: 1220	n:700000
Cons ci ratio: 1.937126e-02	ci left: 5.473156e-02	ci right 5.580355e-02	k: 38686	n:700000
KS ci ratio: 1.130164e-01	ci left: 1.618729e-03	ci right 1.814003e-03	k: 1200	n:700000
SETD2   700000 perm   513 sec   (1365 perm/sec)   p_kst 1.714286e-03   p_cons 5.526571e-02   p_joint 1.742857e-03

Joint ci ratio: 1.110439e-01	ci left: 1.654798e-03	ci right 1.850711e-03	k: 1243	n:710000
Cons ci ratio: 1.923557e-02	ci left: 5.472880e-02	ci right 5.579314e-02	k: 39234	n:710000
KS ci ratio: 1.121788e-01	ci left: 1.620568e-03	ci right 1.814519e-03	k: 1218	n:710000
SETD2   710000 perm   523 sec   (1357 perm/sec)   p_kst 1.715493e-03   p_cons 5.525915e-02   p_joint 1.750704e-03

Joint ci ratio: 1.104246e-01	ci left: 1.650721e-03	ci right 1.844990e-03	k: 1257	n:720000
Cons ci ratio: 1.910244e-02	ci left: 5.472752e-02	ci right 5.578440e-02	k: 39783	n:720000
KS ci ratio: 1.114047e-01	ci left: 1.621011e-03	ci right 1.813589e-03	k: 1235	n:720000
SETD2   720000 perm   533 sec   (1350 perm/sec)   p_kst 1.715278e-03   p_cons 5.525417e-02   p_joint 1.745833e-03

Joint ci ratio: 1.094712e-01	ci left: 1.657416e-03	ci right 1.850681e-03	k: 1279	n:730000
Cons ci ratio: 1.897651e-02	ci left: 5.470175e-02	ci right 5.575109e-02	k: 40314	n:730000
KS ci ratio: 1.103820e-01	ci left: 1.629439e-03	ci right 1.821125e-03	k: 1258	n:730000
SETD2   730000 perm   544 sec   (1343 perm/sec)   p_kst 1.723288e-03   p_cons 5.522466e-02   p_joint 1.752055e-03

Joint ci ratio: 1.116337e-01	ci left: 1.570630e-03	ci right 1.757630e-03	k: 1230	n:740000
Cons ci ratio: 1.884865e-02	ci left: 5.470092e-02	ci right 5.574310e-02	k: 40863	n:740000
KS ci ratio: 1.096873e-01	ci left: 1.628446e-03	ci right 1.818732e-03	k: 1274	n:740000
SETD2   740000 perm   554 sec   (1336 perm/sec)   p_kst 1.721622e-03   p_cons 5.522027e-02   p_joint 1.662162e-03

Joint ci ratio: 1.108262e-01	ci left: 1.573020e-03	ci right 1.758863e-03	k: 1248	n:750000
Cons ci ratio: 1.872215e-02	ci left: 5.470678e-02	ci right 5.574199e-02	k: 41417	n:750000
KS ci ratio: 1.090055e-01	ci left: 1.627483e-03	ci right 1.816399e-03	k: 1290	n:750000
SETD2   750000 perm   565 sec   (1328 perm/sec)   p_kst 1.720000e-03   p_cons 5.522267e-02   p_joint 1.664000e-03

Joint ci ratio: 1.122774e-01	ci left: 1.511389e-03	ci right 1.692443e-03	k: 1216	n:760000
Cons ci ratio: 1.860027e-02	ci left: 5.470071e-02	ci right 5.572900e-02	k: 41962	n:760000
KS ci ratio: 1.085445e-01	ci left: 1.620149e-03	ci right 1.807366e-03	k: 1301	n:760000
SETD2   760000 perm   575 sec   (1321 perm/sec)   p_kst 1.711842e-03   p_cons 5.521316e-02   p_joint 1.600000e-03

Joint ci ratio: 1.115919e-01	ci left: 1.510696e-03	ci right 1.690489e-03	k: 1231	n:770000
Cons ci ratio: 1.848396e-02	ci left: 5.467672e-02	ci right 5.569806e-02	k: 42493	n:770000
KS ci ratio: 1.080481e-01	ci left: 1.614270e-03	ci right 1.799901e-03	k: 1313	n:770000
SETD2   770000 perm   586 sec   (1314 perm/sec)   p_kst 1.705195e-03   p_cons 5.518571e-02   p_joint 1.598701e-03

Joint ci ratio: 1.108743e-01	ci left: 1.511270e-03	ci right 1.689900e-03	k: 1247	n:780000
Cons ci ratio: 1.836212e-02	ci left: 5.469676e-02	ci right 5.571167e-02	k: 43058	n:780000
KS ci ratio: 1.074773e-01	ci left: 1.611039e-03	ci right 1.795258e-03	k: 1327	n:780000
SETD2   780000 perm   597 sec   (1307 perm/sec)   p_kst 1.701282e-03   p_cons 5.520256e-02   p_joint 1.598718e-03

Joint ci ratio: 1.110091e-01	ci left: 1.488447e-03	ci right 1.664607e-03	k: 1244	n:790000
Cons ci ratio: 1.824311e-02	ci left: 5.471380e-02	ci right 5.572238e-02	k: 43621	n:790000
KS ci ratio: 1.066768e-01	ci left: 1.615284e-03	ci right 1.798527e-03	k: 1347	n:790000
SETD2   790000 perm   608 sec   (1298 perm/sec)   p_kst 1.705063e-03   p_cons 5.521646e-02   p_joint 1.574684e-03

Joint ci ratio: 1.100842e-01	ci left: 1.495366e-03	ci right 1.670775e-03	k: 1265	n:800000
Cons ci ratio: 1.812638e-02	ci left: 5.473043e-02	ci right 5.573279e-02	k: 44184	n:800000
KS ci ratio: 1.060494e-01	ci left: 1.614561e-03	ci right 1.796577e-03	k: 1363	n:800000
SETD2   800000 perm   619 sec   (1292 perm/sec)   p_kst 1.703750e-03   p_cons 5.523000e-02   p_joint 1.581250e-03

Joint ci ratio: 1.092246e-01	ci left: 1.500919e-03	ci right 1.675516e-03	k: 1285	n:810000
Cons ci ratio: 1.801336e-02	ci left: 5.473806e-02	ci right 5.573425e-02	k: 44740	n:810000
KS ci ratio: 1.050523e-01	ci left: 1.625880e-03	ci right 1.807343e-03	k: 1389	n:810000
SETD2   810000 perm   630 sec   (1285 perm/sec)   p_kst 1.714815e-03   p_cons 5.523457e-02   p_joint 1.586420e-03

Joint ci ratio: 1.136962e-01	ci left: 1.365243e-03	ci right 1.530994e-03	k: 1186	n:820000
Cons ci ratio: 1.790451e-02	ci left: 5.473339e-02	ci right 5.572341e-02	k: 45286	n:820000
KS ci ratio: 1.046021e-01	ci left: 1.620303e-03	ci right 1.800320e-03	k: 1401	n:820000
SETD2   820000 perm   642 sec   (1278 perm/sec)   p_kst 1.708537e-03   p_cons 5.522683e-02   p_joint 1.446341e-03

Joint ci ratio: 1.040103e-01	ci left: 1.619555e-03	ci right 1.798409e-03	k: 1417	n:830000
Cons ci ratio: 1.780173e-02	ci left: 5.470485e-02	ci right 5.568862e-02	k: 45812	n:830000
KS ci ratio: 1.041207e-01	ci left: 1.616035e-03	ci right 1.794701e-03	k: 1414	n:830000
SETD2   830000 perm   653 sec   (1272 perm/sec)   p_kst 1.703614e-03   p_cons 5.519518e-02   p_joint 1.707229e-03

Joint ci ratio: 1.043436e-01	ci left: 1.589838e-03	ci right 1.766007e-03	k: 1408	n:840000
Cons ci ratio: 1.770009e-02	ci left: 5.468056e-02	ci right 5.565822e-02	k: 46341	n:840000
KS ci ratio: 1.036096e-01	ci left: 1.613030e-03	ci right 1.790435e-03	k: 1428	n:840000
SETD2   840000 perm   664 sec   (1265 perm/sec)   p_kst 1.700000e-03   p_cons 5.516786e-02   p_joint 1.676190e-03

Joint ci ratio: 1.035743e-01	ci left: 1.595198e-03	ci right 1.770579e-03	k: 1429	n:850000
Cons ci ratio: 1.759302e-02	ci left: 5.469904e-02	ci right 5.567105e-02	k: 46906	n:850000
KS ci ratio: 1.029631e-01	ci left: 1.614682e-03	ci right 1.791094e-03	k: 1446	n:850000
SETD2   850000 perm   675 sec   (1259 perm/sec)   p_kst 1.701176e-03   p_cons 5.518353e-02   p_joint 1.681176e-03

Joint ci ratio: 1.001931e-01	ci left: 1.687704e-03	ci right 1.866841e-03	k: 1527	n:860000
Cons ci ratio: 1.748320e-02	ci left: 5.474489e-02	ci right 5.571159e-02	k: 47495	n:860000
KS ci ratio: 1.021541e-01	ci left: 1.621966e-03	ci right 1.797697e-03	k: 1469	n:860000
SETD2   860000 perm   687 sec   (1253 perm/sec)   p_kst 1.708140e-03   p_cons 5.522674e-02   p_joint 1.775581e-03

Joint ci ratio: 9.951147e-02	ci left: 1.691840e-03	ci right 1.870124e-03	k: 1548	n:870000
Cons ci ratio: 1.738976e-02	ci left: 5.470386e-02	ci right 5.566462e-02	k: 48009	n:870000
KS ci ratio: 1.017399e-01	ci left: 1.616763e-03	ci right 1.791179e-03	k: 1481	n:870000
SETD2   870000 perm   698 sec   (1246 perm/sec)   p_kst 1.702299e-03   p_cons 5.518276e-02   p_joint 1.779310e-03

Joint ci ratio: 9.890666e-02	ci left: 1.693670e-03	ci right 1.870999e-03	k: 1567	n:880000
Cons ci ratio: 1.728405e-02	ci left: 5.474639e-02	ci right 5.570199e-02	k: 48596	n:880000
KS ci ratio: 1.010601e-01	ci left: 1.620542e-03	ci right 1.794128e-03	k: 1501	n:880000
SETD2   880000 perm   710 sec   (1240 perm/sec)   p_kst 1.705682e-03   p_cons 5.522273e-02   p_joint 1.780682e-03

Joint ci ratio: 9.843710e-02	ci left: 1.691078e-03	ci right 1.867246e-03	k: 1582	n:890000
Cons ci ratio: 1.719228e-02	ci left: 5.471524e-02	ci right 5.566518e-02	k: 49118	n:890000
KS ci ratio: 1.003608e-01	ci left: 1.625335e-03	ci right 1.798158e-03	k: 1522	n:890000
SETD2   890000 perm   721 sec   (1234 perm/sec)   p_kst 1.710112e-03   p_cons 5.518876e-02   p_joint 1.777528e-03

Joint ci ratio: 9.859418e-02	ci left: 1.666869e-03	ci right 1.840808e-03	k: 1577	n:900000
Cons ci ratio: 1.709229e-02	ci left: 5.474345e-02	ci right 5.568830e-02	k: 49693	n:900000
KS ci ratio: 9.993539e-02	ci left: 1.621358e-03	ci right 1.792985e-03	k: 1535	n:900000
SETD2   900000 perm   733 sec   (1228 perm/sec)   p_kst 1.705556e-03   p_cons 5.521444e-02   p_joint 1.752222e-03

Outputting figure to mutsig2_images.part000000000155/SETD2.21_7779_900000_0.0017056_0.055214_0.0017522.png
                gene_name: SETD2
               theta_stop: 0.100 
                    nperm: 900000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.0018 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 3 percent done.
SETX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
Cons ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
KS ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
SETX   10000 perm   4 sec   (2720 perm/sec)   p_kst 4.903000e-01   p_cons 8.000000e-02   p_joint 2.451000e-01

Joint ci ratio: 4.475348e-02	ci left: 2.710042e-01	ci right 2.834606e-01	k: 5544	n:20000
Cons ci ratio: 9.651026e-02	ci left: 7.251086e-02	ci right 7.991291e-02	k: 1523	n:20000
KS ci ratio: 2.840686e-02	ci left: 4.807498e-01	ci right 4.946538e-01	k: 9754	n:20000
SETX   20000 perm   8 sec   (2534 perm/sec)   p_kst 4.877000e-01   p_cons 7.615000e-02   p_joint 2.772000e-01

Outputting figure to mutsig2_images.part000000000155/SETX.17_8130_20000_0.4877_0.07615_0.2772.png
                gene_name: SETX
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 5 percent done.
SERPINB4
Processing conservation and coverage...
Processing mutations... 
Skipping 7 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
SERPINB4   10000 perm   2 sec   (5538 perm/sec)   p_kst 7.700000e-01   p_cons 4.722000e-01   p_joint 9.097000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB4.8_1201_10000_0.77_0.4722_0.9097.png
                gene_name: SERPINB4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 6 percent done.
SEZ6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
SEZ6L   10000 perm   3 sec   (3853 perm/sec)   p_kst 7.709000e-01   p_cons 9.011000e-01   p_joint 9.388000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L.14_3143_10000_0.7709_0.9011_0.9388.png
                gene_name: SEZ6L
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 8 percent done.
SERPINB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
Cons ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
SERPINB13   10000 perm   2 sec   (4954 perm/sec)   p_kst 2.593000e-01   p_cons 1.665000e-01   p_joint 1.675000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB13.12_1204_10000_0.2593_0.1665_0.1675.png
                gene_name: SERPINB13
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 9 percent done.
SFMBT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
Cons ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
KS ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
SFMBT2   10000 perm   2 sec   (4357 perm/sec)   p_kst 3.427000e-01   p_cons 1.295000e-01   p_joint 3.009000e-01

Joint ci ratio: 5.527244e-02	ci left: 1.953658e-01	ci right 2.065212e-01	k: 4018	n:20000
Cons ci ratio: 7.228161e-02	ci left: 1.235468e-01	ci right 1.328616e-01	k: 2563	n:20000
KS ci ratio: 3.724467e-02	ci left: 3.497587e-01	ci right 3.630831e-01	k: 7128	n:20000
SFMBT2   20000 perm   5 sec   (3932 perm/sec)   p_kst 3.564000e-01   p_cons 1.281500e-01   p_joint 2.009000e-01

Outputting figure to mutsig2_images.part000000000155/SFMBT2.11_2765_20000_0.3564_0.12815_0.2009.png
                gene_name: SFMBT2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
SERPINA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
SERPINA3   10000 perm   2 sec   (5486 perm/sec)   p_kst 7.316000e-01   p_cons 4.156000e-01   p_joint 6.858000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA3.9_1288_10000_0.7316_0.4156_0.6858.png
                gene_name: SERPINA3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
SERPINA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
Cons ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
KS ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
SERPINA4   10000 perm   2 sec   (4957 perm/sec)   p_kst 3.572000e-01   p_cons 1.927000e-01   p_joint 3.502000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA4.9_1300_10000_0.3572_0.1927_0.3502.png
                gene_name: SERPINA4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 14 percent done.
SEZ6L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
Cons ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
SEZ6L2   10000 perm   3 sec   (3918 perm/sec)   p_kst 6.539000e-01   p_cons 8.657000e-01   p_joint 8.323000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L2.9_2844_10000_0.6539_0.8657_0.8323.png
                gene_name: SEZ6L2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 16 percent done.
SF3B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
SF3B3   10000 perm   2 sec   (4234 perm/sec)   p_kst 5.376000e-01   p_cons 1.707000e-01   p_joint 4.120000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B3.9_3754_10000_0.5376_0.1707_0.412.png
                gene_name: SF3B3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
SERPINB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
SERPINB7   10000 perm   2 sec   (5642 perm/sec)   p_kst 1.031000e-01   p_cons 4.551000e-01   p_joint 1.859000e-01

Joint ci ratio: 5.620153e-02	ci left: 1.901222e-01	ci right 2.011664e-01	k: 3912	n:20000
Cons ci ratio: 2.939398e-02	ci left: 4.637121e-01	ci right 4.775964e-01	k: 9413	n:20000
KS ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
SERPINB7   20000 perm   4 sec   (5010 perm/sec)   p_kst 1.028500e-01   p_cons 4.706500e-01   p_joint 1.956000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB7.8_1171_20000_0.10285_0.47065_0.1956.png
                gene_name: SERPINB7
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 19 percent done.
SERPINC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
SERPINC1   10000 perm   2 sec   (4879 perm/sec)   p_kst 1.936000e-01   p_cons 5.703000e-01   p_joint 3.697000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINC1.8_1423_10000_0.1936_0.5703_0.3697.png
                gene_name: SERPINC1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
SETD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
SETD1A   10000 perm   3 sec   (3707 perm/sec)   p_kst 1.090000e-01   p_cons 2.821000e-01   p_joint 2.266000e-01

Joint ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
Cons ci ratio: 4.445940e-02	ci left: 2.736357e-01	ci right 2.861284e-01	k: 5597	n:20000
KS ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
SETD1A   20000 perm   6 sec   (3436 perm/sec)   p_kst 1.002000e-01   p_cons 2.798500e-01   p_joint 1.237000e-01

Outputting figure to mutsig2_images.part000000000155/SETD1A.8_5196_20000_0.1002_0.27985_0.1237.png
                gene_name: SETD1A
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
SF3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
SF3B2   10000 perm   2 sec   (4368 perm/sec)   p_kst 5.775000e-01   p_cons 1.602000e-01   p_joint 4.439000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B2.8_2776_10000_0.5775_0.1602_0.4439.png
                gene_name: SF3B2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 23 percent done.
SERPINA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
KS ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
SERPINA5   10000 perm   2 sec   (5295 perm/sec)   p_kst 4.754000e-01   p_cons 5.930000e-02   p_joint 1.558000e-01

Joint ci ratio: 6.680972e-02	ci left: 1.419218e-01	ci right 1.517811e-01	k: 2936	n:20000
Cons ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
KS ci ratio: 2.905989e-02	ci left: 4.694071e-01	ci right 4.832998e-01	k: 9527	n:20000
SERPINA5   20000 perm   4 sec   (4747 perm/sec)   p_kst 4.763500e-01   p_cons 5.715000e-02   p_joint 1.468000e-01

Joint ci ratio: 5.700331e-02	ci left: 1.322715e-01	ci right 1.400658e-01	k: 4084	n:30000
Cons ci ratio: 9.324420e-02	ci left: 5.303346e-02	ci right 5.825301e-02	k: 1668	n:30000
KS ci ratio: 2.376045e-02	ci left: 4.700014e-01	ci right 4.813367e-01	k: 14270	n:30000
SERPINA5   30000 perm   7 sec   (4532 perm/sec)   p_kst 4.756667e-01   p_cons 5.560000e-02   p_joint 1.361333e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA5.7_1237_30000_0.47567_0.0556_0.13613.png
                gene_name: SERPINA5
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
SERPINI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
SERPINI2   10000 perm   2 sec   (6020 perm/sec)   p_kst 4.529000e-01   p_cons 2.870000e-02   p_joint 1.652000e-01

Joint ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
Cons ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
KS ci ratio: 2.883947e-02	ci left: 4.732043e-01	ci right 4.871015e-01	k: 9603	n:20000
SERPINI2   20000 perm   4 sec   (5311 perm/sec)   p_kst 4.801500e-01   p_cons 2.820000e-02   p_joint 1.239000e-01

Joint ci ratio: 7.273696e-02	ci left: 8.504709e-02	ci right 9.149957e-02	k: 2647	n:30000
Cons ci ratio: 1.458884e-01	ci left: 2.178327e-02	ci right 2.524319e-02	k: 704	n:30000
KS ci ratio: 2.367330e-02	ci left: 4.718335e-01	ci right 4.831708e-01	k: 14325	n:30000
SERPINI2   30000 perm   6 sec   (5047 perm/sec)   p_kst 4.775000e-01   p_cons 2.346667e-02   p_joint 8.823333e-02

Joint ci ratio: 6.673856e-02	ci left: 7.674398e-02	ci right 8.206727e-02	k: 3175	n:40000
Cons ci ratio: 1.262748e-01	ci left: 2.203764e-02	ci right 2.503208e-02	k: 940	n:40000
KS ci ratio: 2.049579e-02	ci left: 4.727443e-01	ci right 4.825590e-01	k: 19106	n:40000
SERPINI2   40000 perm   8 sec   (4868 perm/sec)   p_kst 4.776500e-01   p_cons 2.350000e-02   p_joint 7.937500e-02

Joint ci ratio: 6.516868e-02	ci left: 6.527669e-02	ci right 6.969369e-02	k: 3373	n:50000
Cons ci ratio: 1.136509e-01	ci left: 2.191768e-02	ci right 2.457807e-02	k: 1161	n:50000
KS ci ratio: 1.833692e-02	ci left: 4.731332e-01	ci right 4.819094e-01	k: 23876	n:50000
SERPINI2   50000 perm   11 sec   (4725 perm/sec)   p_kst 4.775200e-01   p_cons 2.322000e-02   p_joint 6.746000e-02

Joint ci ratio: 5.407998e-02	ci left: 7.833505e-02	ci right 8.270562e-02	k: 4830	n:60000
Cons ci ratio: 1.007699e-01	ci left: 2.335899e-02	ci right 2.585395e-02	k: 1475	n:60000
KS ci ratio: 1.673832e-02	ci left: 4.735461e-01	ci right 4.815561e-01	k: 28653	n:60000
SERPINI2   60000 perm   13 sec   (4607 perm/sec)   p_kst 4.775500e-01   p_cons 2.458333e-02   p_joint 8.050000e-02

Joint ci ratio: 5.320856e-02	ci left: 7.003932e-02	ci right 7.388197e-02	k: 5036	n:70000
Cons ci ratio: 9.304592e-02	ci left: 2.357677e-02	ci right 2.589143e-02	k: 1730	n:70000
KS ci ratio: 1.567464e-02	ci left: 4.681531e-01	ci right 4.755635e-01	k: 33030	n:70000
SERPINI2   70000 perm   16 sec   (4489 perm/sec)   p_kst 4.718571e-01   p_cons 2.471429e-02   p_joint 7.194286e-02

Outputting figure to mutsig2_images.part000000000155/SERPINI2.7_1250_70000_0.47186_0.024714_0.071943.png
                gene_name: SERPINI2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 27 percent done.
SESTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
SESTD1   10000 perm   2 sec   (5090 perm/sec)   p_kst 3.565000e-01   p_cons 2.168000e-01   p_joint 3.080000e-01

Outputting figure to mutsig2_images.part000000000155/SESTD1.7_2159_10000_0.3565_0.2168_0.308.png
                gene_name: SESTD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 28 percent done.
SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
Cons ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
SF1   10000 perm   2 sec   (4671 perm/sec)   p_kst 2.910000e-02   p_cons 9.800000e-02   p_joint 5.290000e-02

Joint ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
Cons ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
KS ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
SF1   20000 perm   5 sec   (4282 perm/sec)   p_kst 3.075000e-02   p_cons 9.860000e-02   p_joint 3.425000e-02

Joint ci ratio: 1.278139e-01	ci left: 2.845385e-02	ci right 3.237112e-02	k: 911	n:30000
Cons ci ratio: 6.893425e-02	ci left: 9.393599e-02	ci right 1.006756e-01	k: 2918	n:30000
KS ci ratio: 1.313464e-01	ci left: 2.693656e-02	ci right 3.075541e-02	k: 864	n:30000
SF1   30000 perm   7 sec   (4081 perm/sec)   p_kst 2.880000e-02   p_cons 9.726667e-02   p_joint 3.036667e-02

Joint ci ratio: 1.058082e-01	ci left: 3.141701e-02	ci right 3.495118e-02	k: 1326	n:40000
Cons ci ratio: 5.942034e-02	ci left: 9.520179e-02	ci right 1.010567e-01	k: 3924	n:40000
KS ci ratio: 1.139704e-01	ci left: 2.708559e-02	ci right 3.038330e-02	k: 1148	n:40000
SF1   40000 perm   10 sec   (3965 perm/sec)   p_kst 2.870000e-02   p_cons 9.810000e-02   p_joint 3.315000e-02

Joint ci ratio: 1.105722e-01	ci left: 2.316260e-02	ci right 2.589299e-02	k: 1225	n:50000
Cons ci ratio: 5.335401e-02	ci left: 9.483428e-02	ci right 1.000526e-01	k: 4871	n:50000
KS ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
SF1   50000 perm   13 sec   (3874 perm/sec)   p_kst 2.838000e-02   p_cons 9.742000e-02   p_joint 2.450000e-02

Joint ci ratio: 1.098471e-01	ci left: 1.964052e-02	ci right 2.193949e-02	k: 1246	n:60000
Cons ci ratio: 4.879514e-02	ci left: 9.474199e-02	ci right 9.949706e-02	k: 5826	n:60000
KS ci ratio: 9.349052e-02	ci left: 2.713422e-02	ci right 2.981165e-02	k: 1707	n:60000
SF1   60000 perm   16 sec   (3801 perm/sec)   p_kst 2.845000e-02   p_cons 9.710000e-02   p_joint 2.076667e-02

Joint ci ratio: 8.414474e-02	ci left: 2.880464e-02	ci right 3.134880e-02	k: 2104	n:70000
Cons ci ratio: 4.776500e-02	ci left: 8.567110e-02	ci right 8.987743e-02	k: 6143	n:70000
KS ci ratio: 8.688518e-02	ci left: 2.702805e-02	ci right 2.949697e-02	k: 1977	n:70000
SF1   70000 perm   19 sec   (3731 perm/sec)   p_kst 2.824286e-02   p_cons 8.775714e-02   p_joint 3.005714e-02

Outputting figure to mutsig2_images.part000000000155/SF1.7_2485_70000_0.028243_0.087757_0.030057.png
                gene_name: SF1
               theta_stop: 0.087 
                    nperm: 70000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 30 percent done.
SERPINA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
SERPINA11   10000 perm   2 sec   (5332 perm/sec)   p_kst 5.860000e-02   p_cons 6.045000e-01   p_joint 1.750000e-01

Joint ci ratio: 6.425284e-02	ci left: 1.518352e-01	ci right 1.619648e-01	k: 3137	n:20000
Cons ci ratio: 2.289584e-02	ci left: 5.875568e-01	ci right 6.012158e-01	k: 11888	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
SERPINA11   20000 perm   4 sec   (4789 perm/sec)   p_kst 5.985000e-02   p_cons 5.944000e-01   p_joint 1.568500e-01

Joint ci ratio: 6.365148e-02	ci left: 1.086496e-01	ci right 1.158257e-01	k: 3366	n:30000
Cons ci ratio: 1.916627e-02	ci left: 5.767282e-01	ci right 5.879225e-01	k: 17470	n:30000
KS ci ratio: 8.815518e-02	ci left: 5.910110e-02	ci right 6.458413e-02	k: 1854	n:30000
SERPINA11   30000 perm   7 sec   (4580 perm/sec)   p_kst 6.180000e-02   p_cons 5.823333e-01   p_joint 1.122000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA11.6_1285_30000_0.0618_0.58233_0.1122.png
                gene_name: SERPINA11
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
SERPINA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
Cons ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
KS ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
SERPINA9   10000 perm   2 sec   (5317 perm/sec)   p_kst 6.283000e-01   p_cons 5.920000e-02   p_joint 1.379000e-01

Joint ci ratio: 4.538721e-02	ci left: 2.654443e-01	ci right 2.778222e-01	k: 5432	n:20000
Cons ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
KS ci ratio: 2.137591e-02	ci left: 6.203048e-01	ci right 6.337582e-01	k: 12541	n:20000
SERPINA9   20000 perm   4 sec   (4777 perm/sec)   p_kst 6.270500e-01   p_cons 6.060000e-02   p_joint 2.716000e-01

Joint ci ratio: 4.395793e-02	ci left: 2.049066e-01	ci right 2.141497e-01	k: 6285	n:30000
Cons ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
KS ci ratio: 1.789234e-02	ci left: 6.098338e-01	ci right 6.208772e-01	k: 18461	n:30000
SERPINA9   30000 perm   7 sec   (4561 perm/sec)   p_kst 6.153667e-01   p_cons 5.826667e-02   p_joint 2.095000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA9.6_1328_30000_0.61537_0.058267_0.2095.png
                gene_name: SERPINA9
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
SERPINB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
Cons ci ratio: 3.634289e-02	ci left: 5.278683e-01	ci right 5.475097e-01	k: 5377	n:10000
KS ci ratio: 2.117017e-02	ci left: 7.658760e-01	ci right 7.823640e-01	k: 7742	n:10000
SERPINB12   10000 perm   2 sec   (5493 perm/sec)   p_kst 7.742000e-01   p_cons 5.377000e-01   p_joint 8.356000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB12.6_1244_10000_0.7742_0.5377_0.8356.png
                gene_name: SERPINB12
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 34 percent done.
SERPINB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
SERPINB2   10000 perm   2 sec   (5604 perm/sec)   p_kst 5.669000e-01   p_cons 6.176000e-01   p_joint 8.985000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB2.6_1276_10000_0.5669_0.6176_0.8985.png
                gene_name: SERPINB2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 36 percent done.
SERPINB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
SERPINB5   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.160000e-02   p_cons 9.330000e-01   p_joint 8.190000e-02

Joint ci ratio: 1.135347e-01	ci left: 5.304786e-02	ci right 5.948191e-02	k: 1124	n:20000
Cons ci ratio: 7.483251e-03	ci left: 9.285252e-01	ci right 9.355486e-01	k: 18642	n:20000
KS ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
SERPINB5   20000 perm   4 sec   (4758 perm/sec)   p_kst 2.025000e-02   p_cons 9.321000e-01   p_joint 5.620000e-02

Joint ci ratio: 9.472568e-02	ci left: 5.143645e-02	ci right 5.658368e-02	k: 1619	n:30000
Cons ci ratio: 5.907644e-03	ci left: 9.334093e-01	ci right 9.389725e-01	k: 28087	n:30000
KS ci ratio: 1.530433e-01	ci left: 1.976016e-02	ci right 2.306676e-02	k: 641	n:30000
SERPINB5   30000 perm   7 sec   (4536 perm/sec)   p_kst 2.136667e-02   p_cons 9.362333e-01   p_joint 5.396667e-02

Joint ci ratio: 9.303065e-02	ci left: 4.051945e-02	ci right 4.449732e-02	k: 1699	n:40000
Cons ci ratio: 5.110923e-03	ci left: 9.339132e-01	ci right 9.387232e-01	k: 37454	n:40000
KS ci ratio: 1.332575e-01	ci left: 1.976230e-02	ci right 2.260780e-02	k: 846	n:40000
SERPINB5   40000 perm   9 sec   (4387 perm/sec)   p_kst 2.115000e-02   p_cons 9.363500e-01   p_joint 4.247500e-02

Joint ci ratio: 7.268007e-02	ci left: 5.297827e-02	ci right 5.699360e-02	k: 2748	n:50000
Cons ci ratio: 4.601429e-03	ci left: 9.333724e-01	ci right 9.376968e-01	k: 46778	n:50000
KS ci ratio: 1.184345e-01	ci left: 2.016881e-02	ci right 2.272717e-02	k: 1071	n:50000
SERPINB5   50000 perm   12 sec   (4277 perm/sec)   p_kst 2.142000e-02   p_cons 9.355600e-01   p_joint 5.496000e-02

Joint ci ratio: 7.490718e-02	ci left: 4.201257e-02	ci right 4.529842e-02	k: 2618	n:60000
Cons ci ratio: 4.197876e-03	ci left: 9.336402e-01	ci right 9.375842e-01	k: 56138	n:60000
KS ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
SERPINB5   60000 perm   14 sec   (4186 perm/sec)   p_kst 2.160000e-02   p_cons 9.356333e-01   p_joint 4.363333e-02

Joint ci ratio: 6.941600e-02	ci left: 4.205692e-02	ci right 4.509534e-02	k: 3049	n:70000
Cons ci ratio: 3.979314e-03	ci left: 9.308478e-01	ci right 9.345734e-01	k: 65291	n:70000
KS ci ratio: 9.836160e-02	ci left: 2.109337e-02	ci right 2.328934e-02	k: 1552	n:70000
SERPINB5   70000 perm   17 sec   (4096 perm/sec)   p_kst 2.217143e-02   p_cons 9.327286e-01   p_joint 4.355714e-02

Outputting figure to mutsig2_images.part000000000155/SERPINB5.6_1152_70000_0.022171_0.93273_0.043557.png
                gene_name: SERPINB5
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 38 percent done.
SF3B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
SF3B4   10000 perm   2 sec   (5618 perm/sec)   p_kst 3.260000e-02   p_cons 7.512000e-01   p_joint 7.340000e-02

Joint ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
Cons ci ratio: 1.627630e-02	ci left: 7.374884e-01	ci right 7.496407e-01	k: 14872	n:20000
KS ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
SF3B4   20000 perm   4 sec   (4970 perm/sec)   p_kst 3.290000e-02   p_cons 7.436000e-01   p_joint 7.610000e-02

Joint ci ratio: 8.952635e-02	ci left: 5.737130e-02	ci right 6.278095e-02	k: 1801	n:30000
Cons ci ratio: 1.335348e-02	ci left: 7.367742e-01	ci right 7.467123e-01	k: 22253	n:30000
KS ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
SF3B4   30000 perm   6 sec   (4721 perm/sec)   p_kst 3.160000e-02   p_cons 7.417667e-01   p_joint 6.003333e-02

Joint ci ratio: 6.386581e-02	ci left: 8.331938e-02	ci right 8.884089e-02	k: 3442	n:40000
Cons ci ratio: 1.153404e-02	ci left: 7.384614e-01	ci right 7.470533e-01	k: 29711	n:40000
KS ci ratio: 1.071091e-01	ci left: 3.066201e-02	ci right 3.415631e-02	k: 1295	n:40000
SF3B4   40000 perm   9 sec   (4545 perm/sec)   p_kst 3.237500e-02   p_cons 7.427750e-01   p_joint 8.605000e-02

Joint ci ratio: 6.579826e-02	ci left: 6.409500e-02	ci right 6.847552e-02	k: 3313	n:50000
Cons ci ratio: 1.031408e-02	ci left: 7.390051e-01	ci right 7.466867e-01	k: 37143	n:50000
KS ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
SF3B4   50000 perm   11 sec   (4425 perm/sec)   p_kst 3.228000e-02   p_cons 7.428600e-01   p_joint 6.626000e-02

Outputting figure to mutsig2_images.part000000000155/SF3B4.6_1299_50000_0.03228_0.74286_0.06626.png
                gene_name: SF3B4
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 39 percent done.
SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
KS ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
SF4   10000 perm   2 sec   (4775 perm/sec)   p_kst 8.040000e-01   p_cons 8.661000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SF4.6_1994_10000_0.804_0.8661_1.png
                gene_name: SF4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
SERPINA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
Cons ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
KS ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
SERPINA10   10000 perm   2 sec   (5288 perm/sec)   p_kst 1.945000e-01   p_cons 1.780000e-01   p_joint 1.158000e-01

Joint ci ratio: 6.566082e-02	ci left: 1.462610e-01	ci right 1.562406e-01	k: 3024	n:20000
Cons ci ratio: 5.918107e-02	ci left: 1.745491e-01	ci right 1.852441e-01	k: 3597	n:20000
KS ci ratio: 5.692600e-02	ci left: 1.861658e-01	ci right 1.971240e-01	k: 3832	n:20000
SERPINA10   20000 perm   4 sec   (4750 perm/sec)   p_kst 1.916000e-01   p_cons 1.798500e-01   p_joint 1.512000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA10.5_1351_20000_0.1916_0.17985_0.1512.png
                gene_name: SERPINA10
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 42 percent done.
SERPINA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
Cons ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
SERPINA12   10000 perm   2 sec   (5328 perm/sec)   p_kst 4.097000e-01   p_cons 4.032000e-01   p_joint 5.976000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA12.5_1261_10000_0.4097_0.4032_0.5976.png
                gene_name: SERPINA12
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 44 percent done.
SERPINA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
Cons ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
KS ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
SERPINA6   10000 perm   2 sec   (5322 perm/sec)   p_kst 6.236000e-01   p_cons 2.667000e-01   p_joint 5.732000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA6.5_1234_10000_0.6236_0.2667_0.5732.png
                gene_name: SERPINA6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 45 percent done.
SERPINB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
Cons ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
KS ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
SERPINB11   10000 perm   2 sec   (5801 perm/sec)   p_kst 6.064000e-01   p_cons 3.401000e-01   p_joint 5.399000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB11.5_1207_10000_0.6064_0.3401_0.5399.png
                gene_name: SERPINB11
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 47 percent done.
SERPINB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
SERPINB3   10000 perm   2 sec   (5685 perm/sec)   p_kst 3.140000e-02   p_cons 5.237000e-01   p_joint 9.840000e-02

Joint ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
Cons ci ratio: 2.625827e-02	ci left: 5.200521e-01	ci right 5.339401e-01	k: 10540	n:20000
KS ci ratio: 1.576109e-01	ci left: 2.763127e-02	ci right 3.240667e-02	k: 599	n:20000
SERPINB3   20000 perm   4 sec   (4963 perm/sec)   p_kst 2.995000e-02   p_cons 5.270000e-01   p_joint 6.845000e-02

Joint ci ratio: 7.799128e-02	ci left: 7.462962e-02	ci right 8.071914e-02	k: 2329	n:30000
Cons ci ratio: 2.141736e-02	ci left: 5.218649e-01	ci right 5.331964e-01	k: 15826	n:30000
KS ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
SERPINB3   30000 perm   6 sec   (4736 perm/sec)   p_kst 3.110000e-02   p_cons 5.275333e-01   p_joint 7.763333e-02

Joint ci ratio: 7.673143e-02	ci left: 5.889498e-02	ci right 6.361896e-02	k: 2449	n:40000
Cons ci ratio: 1.854850e-02	ci left: 5.226182e-01	ci right 5.324278e-01	k: 21101	n:40000
KS ci ratio: 1.082363e-01	ci left: 3.002898e-02	ci right 3.348944e-02	k: 1269	n:40000
SERPINB3   40000 perm   9 sec   (4605 perm/sec)   p_kst 3.172500e-02   p_cons 5.275250e-01   p_joint 6.122500e-02

Joint ci ratio: 6.595827e-02	ci left: 6.379961e-02	ci right 6.817095e-02	k: 3298	n:50000
Cons ci ratio: 1.667931e-02	ci left: 5.204715e-01	ci right 5.292456e-01	k: 26243	n:50000
KS ci ratio: 9.797911e-02	ci left: 2.949811e-02	ci right 3.255666e-02	k: 1550	n:50000
SERPINB3   50000 perm   11 sec   (4502 perm/sec)   p_kst 3.100000e-02   p_cons 5.248600e-01   p_joint 6.596000e-02

Outputting figure to mutsig2_images.part000000000155/SERPINB3.5_1201_50000_0.031_0.52486_0.06596.png
                gene_name: SERPINB3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 48 percent done.
SERPINE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
Cons ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
KS ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
SERPINE1   10000 perm   2 sec   (4977 perm/sec)   p_kst 2.603000e-01   p_cons 7.877000e-01   p_joint 4.671000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINE1.5_1241_10000_0.2603_0.7877_0.4671.png
                gene_name: SERPINE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 50 percent done.
SETDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.177704e-02	ci left: 5.937330e-01	ci right 6.130067e-01	k: 6034	n:10000
KS ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
SETDB1   10000 perm   2 sec   (4289 perm/sec)   p_kst 8.157000e-01   p_cons 6.034000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SETDB1.5_3960_10000_0.8157_0.6034_1.png
                gene_name: SETDB1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SF3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
SF3A1   10000 perm   2 sec   (5032 perm/sec)   p_kst 1.635000e-01   p_cons 1.100000e-03   p_joint 5.300000e-03

Joint ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
Cons ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
KS ci ratio: 6.308832e-02	ci left: 1.566712e-01	ci right 1.669273e-01	k: 3235	n:20000
SF3A1   20000 perm   4 sec   (4538 perm/sec)   p_kst 1.617500e-01   p_cons 9.500000e-04   p_joint 7.800000e-03

Joint ci ratio: 2.888848e-01	ci left: 5.219404e-03	ci right 7.011603e-03	k: 182	n:30000
Cons ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
KS ci ratio: 5.150533e-02	ci left: 1.576490e-01	ci right 1.660166e-01	k: 4854	n:30000
SF3A1   30000 perm   7 sec   (4339 perm/sec)   p_kst 1.618000e-01   p_cons 8.000000e-04   p_joint 6.066667e-03

Joint ci ratio: 3.472868e-01	ci left: 2.624692e-03	ci right 3.749350e-03	k: 126	n:40000
Cons ci ratio: 6.926788e-01	ci left: 5.266337e-04	ci right 1.099872e-03	k: 31	n:40000
KS ci ratio: 4.456125e-02	ci left: 1.584757e-01	ci right 1.657234e-01	k: 6483	n:40000
SF3A1   40000 perm   10 sec   (4198 perm/sec)   p_kst 1.620750e-01   p_cons 7.750000e-04   p_joint 3.150000e-03

Joint ci ratio: 3.296545e-01	ci left: 2.355912e-03	ci right 3.303277e-03	k: 140	n:50000
Cons ci ratio: 6.441991e-01	ci left: 5.043285e-04	ci right 9.966455e-04	k: 36	n:50000
KS ci ratio: 3.980704e-02	ci left: 1.591967e-01	ci right 1.656825e-01	k: 8121	n:50000
SF3A1   50000 perm   12 sec   (4087 perm/sec)   p_kst 1.624200e-01   p_cons 7.200000e-04   p_joint 2.800000e-03

Joint ci ratio: 3.075657e-01	ci left: 2.285288e-03	ci right 3.130623e-03	k: 161	n:60000
Cons ci ratio: 5.975752e-01	ci left: 5.045436e-04	ci right 9.460802e-04	k: 42	n:60000
KS ci ratio: 3.622430e-02	ci left: 1.603338e-01	ci right 1.662655e-01	k: 9797	n:60000
SF3A1   60000 perm   15 sec   (4001 perm/sec)   p_kst 1.632833e-01   p_cons 7.000000e-04   p_joint 2.683333e-03

Joint ci ratio: 2.862736e-01	ci left: 2.289392e-03	ci right 3.067032e-03	k: 186	n:70000
Cons ci ratio: 5.382457e-01	ci left: 5.548495e-04	ci right 9.740456e-04	k: 52	n:70000
KS ci ratio: 3.340111e-02	ci left: 1.616611e-01	ci right 1.671667e-01	k: 11508	n:70000
SF3A1   70000 perm   18 sec   (3925 perm/sec)   p_kst 1.644000e-01   p_cons 7.428571e-04   p_joint 2.657143e-03

Joint ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
Cons ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
KS ci ratio: 3.131536e-02	ci left: 1.612166e-01	ci right 1.663578e-01	k: 13102	n:80000
SF3A1   80000 perm   21 sec   (3845 perm/sec)   p_kst 1.637750e-01   p_cons 7.625000e-04   p_joint 3.462500e-03

Joint ci ratio: 2.306171e-01	ci left: 2.831083e-03	ci right 3.579283e-03	k: 287	n:90000
Cons ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
KS ci ratio: 2.945857e-02	ci left: 1.619728e-01	ci right 1.668266e-01	k: 14795	n:90000
SF3A1   90000 perm   24 sec   (3770 perm/sec)   p_kst 1.643889e-01   p_cons 7.222222e-04   p_joint 3.188889e-03

Joint ci ratio: 2.352024e-01	ci left: 2.444333e-03	ci right 3.105032e-03	k: 276	n:100000
Cons ci ratio: 4.618078e-01	ci left: 5.545562e-04	ci right 8.954853e-04	k: 71	n:100000
KS ci ratio: 2.793365e-02	ci left: 1.622269e-01	ci right 1.668326e-01	k: 16452	n:100000
SF3A1   100000 perm   27 sec   (3705 perm/sec)   p_kst 1.645200e-01   p_cons 7.100000e-04   p_joint 2.760000e-03

Joint ci ratio: 1.566054e-01	ci left: 5.219957e-03	ci right 6.115500e-03	k: 622	n:110000
Cons ci ratio: 4.408741e-01	ci left: 5.605460e-04	ci right 8.848997e-04	k: 78	n:110000
KS ci ratio: 2.675526e-02	ci left: 1.610928e-01	ci right 1.654704e-01	k: 17960	n:110000
SF3A1   110000 perm   30 sec   (3638 perm/sec)   p_kst 1.632727e-01   p_cons 7.090909e-04   p_joint 5.654545e-03

Joint ci ratio: 1.392734e-01	ci left: 6.101385e-03	ci right 7.022705e-03	k: 786	n:120000
Cons ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
KS ci ratio: 2.557942e-02	ci left: 1.615774e-01	ci right 1.657722e-01	k: 19640	n:120000
SF3A1   120000 perm   33 sec   (3583 perm/sec)   p_kst 1.636667e-01   p_cons 7.250000e-04   p_joint 6.550000e-03

Joint ci ratio: 1.364594e-01	ci left: 5.877091e-03	ci right 6.745152e-03	k: 819	n:130000
Cons ci ratio: 4.063381e-01	ci left: 5.705368e-04	ci right 8.678523e-04	k: 92	n:130000
KS ci ratio: 2.455919e-02	ci left: 1.618454e-01	ci right 1.658773e-01	k: 21301	n:130000
SF3A1   130000 perm   37 sec   (3531 perm/sec)   p_kst 1.638538e-01   p_cons 7.076923e-04   p_joint 6.300000e-03

Joint ci ratio: 1.322571e-01	ci left: 5.823135e-03	ci right 6.654657e-03	k: 872	n:140000
Cons ci ratio: 3.899125e-01	ci left: 5.812080e-04	ci right 8.686957e-04	k: 100	n:140000
KS ci ratio: 2.369710e-02	ci left: 1.615591e-01	ci right 1.654406e-01	k: 22889	n:140000
SF3A1   140000 perm   40 sec   (3481 perm/sec)   p_kst 1.634929e-01   p_cons 7.142857e-04   p_joint 6.228571e-03

Joint ci ratio: 1.324375e-01	ci left: 5.421959e-03	ci right 6.197330e-03	k: 870	n:150000
Cons ci ratio: 3.824176e-01	ci left: 5.665376e-04	ci right 8.400277e-04	k: 104	n:150000
KS ci ratio: 2.291760e-02	ci left: 1.613397e-01	ci right 1.650867e-01	k: 24481	n:150000
SF3A1   150000 perm   44 sec   (3430 perm/sec)   p_kst 1.632067e-01   p_cons 6.933333e-04   p_joint 5.800000e-03

Joint ci ratio: 1.280981e-01	ci left: 5.445872e-03	ci right 6.197205e-03	k: 930	n:160000
Cons ci ratio: 3.686312e-01	ci left: 5.764117e-04	ci right 8.422220e-04	k: 112	n:160000
KS ci ratio: 2.218283e-02	ci left: 1.614856e-01	ci right 1.651141e-01	k: 26127	n:160000
SF3A1   160000 perm   47 sec   (3383 perm/sec)   p_kst 1.632937e-01   p_cons 7.000000e-04   p_joint 5.812500e-03

Joint ci ratio: 1.317251e-01	ci left: 4.840865e-03	ci right 5.529117e-03	k: 880	n:170000
Cons ci ratio: 3.547717e-01	ci left: 5.906375e-04	ci right 8.504090e-04	k: 121	n:170000
KS ci ratio: 2.152283e-02	ci left: 1.615105e-01	ci right 1.650304e-01	k: 27755	n:170000
SF3A1   170000 perm   51 sec   (3338 perm/sec)   p_kst 1.632647e-01   p_cons 7.117647e-04   p_joint 5.176471e-03

Joint ci ratio: 1.381975e-01	ci left: 4.142377e-03	ci right 4.762638e-03	k: 800	n:180000
Cons ci ratio: 3.463581e-01	ci left: 5.882228e-04	ci right 8.394210e-04	k: 127	n:180000
KS ci ratio: 2.091758e-02	ci left: 1.615453e-01	ci right 1.649656e-01	k: 29385	n:180000
SF3A1   180000 perm   55 sec   (3290 perm/sec)   p_kst 1.632500e-01   p_cons 7.055556e-04   p_joint 4.444444e-03

Joint ci ratio: 1.383005e-01	ci left: 3.919245e-03	ci right 4.506567e-03	k: 799	n:190000
Cons ci ratio: 3.397872e-01	ci left: 5.813120e-04	ci right 8.238161e-04	k: 132	n:190000
KS ci ratio: 2.036539e-02	ci left: 1.615146e-01	ci right 1.648430e-01	k: 31003	n:190000
SF3A1   190000 perm   59 sec   (3247 perm/sec)   p_kst 1.631737e-01   p_cons 6.947368e-04   p_joint 4.205263e-03

Joint ci ratio: 1.191255e-01	ci left: 5.064094e-03	ci right 5.710369e-03	k: 1076	n:200000
Cons ci ratio: 3.311837e-01	ci left: 5.842989e-04	ci right 8.205622e-04	k: 139	n:200000
KS ci ratio: 1.982860e-02	ci left: 1.618467e-01	ci right 1.650930e-01	k: 32693	n:200000
SF3A1   200000 perm   62 sec   (3204 perm/sec)   p_kst 1.634650e-01   p_cons 6.950000e-04   p_joint 5.380000e-03

Joint ci ratio: 1.221408e-01	ci left: 4.582729e-03	ci right 5.183444e-03	k: 1024	n:210000
Cons ci ratio: 3.254251e-01	ci left: 5.783222e-04	ci right 8.072534e-04	k: 144	n:210000
KS ci ratio: 1.936142e-02	ci left: 1.617356e-01	ci right 1.649023e-01	k: 34296	n:210000
SF3A1   210000 perm   66 sec   (3162 perm/sec)   p_kst 1.633143e-01   p_cons 6.857143e-04   p_joint 4.876190e-03

Joint ci ratio: 1.220348e-01	ci left: 4.383208e-03	ci right 4.957235e-03	k: 1026	n:220000
Cons ci ratio: 3.199568e-01	ci left: 5.729211e-04	ci right 7.951224e-04	k: 149	n:220000
KS ci ratio: 1.892043e-02	ci left: 1.617123e-01	ci right 1.648057e-01	k: 35916	n:220000
SF3A1   220000 perm   70 sec   (3121 perm/sec)   p_kst 1.632545e-01   p_cons 6.772727e-04   p_joint 4.663636e-03

Joint ci ratio: 1.272551e-01	ci left: 3.847156e-03	ci right 4.374158e-03	k: 944	n:230000
Cons ci ratio: 3.157761e-01	ci left: 5.640150e-04	ci right 7.793267e-04	k: 153	n:230000
KS ci ratio: 1.850678e-02	ci left: 1.617135e-01	ci right 1.647385e-01	k: 37541	n:230000
SF3A1   230000 perm   75 sec   (3082 perm/sec)   p_kst 1.632217e-01   p_cons 6.652174e-04   p_joint 4.104348e-03

Joint ci ratio: 1.277419e-01	ci left: 3.658598e-03	ci right 4.161832e-03	k: 937	n:240000
Cons ci ratio: 3.107726e-01	ci left: 5.597099e-04	ci right 7.693211e-04	k: 158	n:240000
KS ci ratio: 1.811360e-02	ci left: 1.617982e-01	ci right 1.647599e-01	k: 39186	n:240000
SF3A1   240000 perm   79 sec   (3044 perm/sec)   p_kst 1.632750e-01   p_cons 6.583333e-04   p_joint 3.904167e-03

Joint ci ratio: 1.214180e-01	ci left: 3.899824e-03	ci right 4.407777e-03	k: 1037	n:250000
Cons ci ratio: 3.032368e-01	ci left: 5.668572e-04	ci right 7.730049e-04	k: 166	n:250000
KS ci ratio: 1.775824e-02	ci left: 1.616656e-01	ci right 1.645662e-01	k: 40778	n:250000
SF3A1   250000 perm   83 sec   (3005 perm/sec)   p_kst 1.631120e-01   p_cons 6.640000e-04   p_joint 4.148000e-03

Joint ci ratio: 1.197032e-01	ci left: 3.861731e-03	ci right 4.357116e-03	k: 1067	n:260000
Cons ci ratio: 2.970744e-01	ci left: 5.699512e-04	ci right 7.722181e-04	k: 173	n:260000
KS ci ratio: 1.740852e-02	ci left: 1.617699e-01	ci right 1.646146e-01	k: 42429	n:260000
SF3A1   260000 perm   88 sec   (2968 perm/sec)   p_kst 1.631885e-01   p_cons 6.653846e-04   p_joint 4.103846e-03

Joint ci ratio: 1.187122e-01	ci left: 3.783374e-03	ci right 4.264406e-03	k: 1085	n:270000
Cons ci ratio: 2.920816e-01	ci left: 5.694222e-04	ci right 7.674771e-04	k: 179	n:270000
KS ci ratio: 1.709699e-02	ci left: 1.615753e-01	ci right 1.643652e-01	k: 44001	n:270000
SF3A1   270000 perm   92 sec   (2931 perm/sec)   p_kst 1.629667e-01   p_cons 6.629630e-04   p_joint 4.018519e-03

Joint ci ratio: 1.173721e-01	ci left: 3.734897e-03	ci right 4.204033e-03	k: 1110	n:280000
Cons ci ratio: 2.888908e-01	ci left: 5.623303e-04	ci right 7.553914e-04	k: 183	n:280000
KS ci ratio: 1.679919e-02	ci left: 1.614343e-01	ci right 1.641727e-01	k: 45584	n:280000
SF3A1   280000 perm   97 sec   (2896 perm/sec)   p_kst 1.628000e-01   p_cons 6.535714e-04   p_joint 3.964286e-03

Joint ci ratio: 1.118547e-01	ci left: 3.981276e-03	ci right 4.456302e-03	k: 1222	n:290000
Cons ci ratio: 2.850446e-01	ci left: 5.589400e-04	ci right 7.478226e-04	k: 188	n:290000
KS ci ratio: 1.651642e-02	ci left: 1.613033e-01	ci right 1.639931e-01	k: 47167	n:290000
SF3A1   290000 perm   101 sec   (2859 perm/sec)   p_kst 1.626448e-01   p_cons 6.482759e-04   p_joint 4.213793e-03

Joint ci ratio: 1.122318e-01	ci left: 3.822630e-03	ci right 4.280366e-03	k: 1214	n:300000
Cons ci ratio: 2.813481e-01	ci left: 5.557917e-04	ci right 7.407426e-04	k: 193	n:300000
KS ci ratio: 1.625064e-02	ci left: 1.611283e-01	ci right 1.637715e-01	k: 48734	n:300000
SF3A1   300000 perm   106 sec   (2826 perm/sec)   p_kst 1.624467e-01   p_cons 6.433333e-04   p_joint 4.046667e-03

Joint ci ratio: 1.121466e-01	ci left: 3.705577e-03	ci right 4.148937e-03	k: 1216	n:310000
Cons ci ratio: 2.777918e-01	ci left: 5.528612e-04	ci right 7.341047e-04	k: 198	n:310000
KS ci ratio: 1.599691e-02	ci left: 1.609714e-01	ci right 1.635704e-01	k: 50303	n:310000
SF3A1   310000 perm   111 sec   (2793 perm/sec)   p_kst 1.622677e-01   p_cons 6.387097e-04   p_joint 3.922581e-03

Joint ci ratio: 1.108356e-01	ci left: 3.677873e-03	ci right 4.112438e-03	k: 1245	n:320000
Cons ci ratio: 2.736965e-01	ci left: 5.530380e-04	ci right 7.312071e-04	k: 204	n:320000
KS ci ratio: 1.574239e-02	ci left: 1.610364e-01	ci right 1.635947e-01	k: 51940	n:320000
SF3A1   320000 perm   116 sec   (2762 perm/sec)   p_kst 1.623125e-01   p_cons 6.375000e-04   p_joint 3.890625e-03

Joint ci ratio: 1.092260e-01	ci left: 3.675457e-03	ci right 4.103024e-03	k: 1282	n:330000
Cons ci ratio: 2.697772e-01	ci left: 5.532225e-04	ci right 7.284668e-04	k: 210	n:330000
KS ci ratio: 1.550414e-02	ci left: 1.610192e-01	ci right 1.635382e-01	k: 53551	n:330000
SF3A1   330000 perm   121 sec   (2731 perm/sec)   p_kst 1.622758e-01   p_cons 6.363636e-04   p_joint 3.884848e-03

Joint ci ratio: 1.140628e-01	ci left: 3.264253e-03	ci right 3.661931e-03	k: 1176	n:340000
Cons ci ratio: 2.666371e-01	ci left: 5.506683e-04	ci right 7.227338e-04	k: 215	n:340000
KS ci ratio: 1.527952e-02	ci left: 1.609477e-01	ci right 1.634287e-01	k: 55143	n:340000
SF3A1   340000 perm   126 sec   (2701 perm/sec)   p_kst 1.621853e-01   p_cons 6.323529e-04   p_joint 3.458824e-03

Joint ci ratio: 1.188768e-01	ci left: 2.912980e-03	ci right 3.283894e-03	k: 1083	n:350000
Cons ci ratio: 2.642029e-01	ci left: 5.456029e-04	ci right 7.142719e-04	k: 219	n:350000
KS ci ratio: 1.506234e-02	ci left: 1.609174e-01	ci right 1.633624e-01	k: 56748	n:350000
SF3A1   350000 perm   131 sec   (2670 perm/sec)   p_kst 1.621371e-01   p_cons 6.257143e-04   p_joint 3.094286e-03

Joint ci ratio: 1.174241e-01	ci left: 2.904847e-03	ci right 3.269891e-03	k: 1110	n:360000
Cons ci ratio: 2.612513e-01	ci left: 5.434214e-04	ci right 7.092326e-04	k: 224	n:360000
KS ci ratio: 1.485415e-02	ci left: 1.608891e-01	ci right 1.632996e-01	k: 58353	n:360000
SF3A1   360000 perm   136 sec   (2641 perm/sec)   p_kst 1.620917e-01   p_cons 6.222222e-04   p_joint 3.083333e-03

Joint ci ratio: 1.163830e-01	ci left: 2.878809e-03	ci right 3.237152e-03	k: 1130	n:370000
Cons ci ratio: 2.595280e-01	ci left: 5.363130e-04	ci right 6.987007e-04	k: 227	n:370000
KS ci ratio: 1.464796e-02	ci left: 1.609812e-01	ci right 1.633593e-01	k: 60002	n:370000
SF3A1   370000 perm   142 sec   (2613 perm/sec)   p_kst 1.621676e-01   p_cons 6.135135e-04   p_joint 3.054054e-03

Joint ci ratio: 1.281772e-01	ci left: 2.297853e-03	ci right 2.615073e-03	k: 932	n:380000
Cons ci ratio: 2.578383e-01	ci left: 5.295821e-04	ci right 6.887197e-04	k: 230	n:380000
KS ci ratio: 1.416719e-02	ci left: 1.665002e-01	ci right 1.688785e-01	k: 63721	n:380000
SF3A1   380000 perm   147 sec   (2585 perm/sec)   p_kst 1.676868e-01   p_cons 6.052632e-04   p_joint 2.452632e-03

Joint ci ratio: 1.260984e-01	ci left: 2.315894e-03	ci right 2.630032e-03	k: 963	n:390000
Cons ci ratio: 2.545537e-01	ci left: 5.303999e-04	ci right 6.874306e-04	k: 236	n:390000
KS ci ratio: 1.398257e-02	ci left: 1.665517e-01	ci right 1.688994e-01	k: 65412	n:390000
SF3A1   390000 perm   152 sec   (2558 perm/sec)   p_kst 1.677231e-01   p_cons 6.051282e-04   p_joint 2.469231e-03

Joint ci ratio: 1.249384e-01	ci left: 2.301583e-03	ci right 2.610695e-03	k: 981	n:400000
Cons ci ratio: 2.513914e-01	ci left: 5.311890e-04	ci right 6.861938e-04	k: 242	n:400000
KS ci ratio: 1.381389e-02	ci left: 1.664212e-01	ci right 1.687386e-01	k: 67031	n:400000
SF3A1   400000 perm   158 sec   (2530 perm/sec)   p_kst 1.675775e-01   p_cons 6.050000e-04   p_joint 2.452500e-03

Joint ci ratio: 1.241213e-01	ci left: 2.276164e-03	ci right 2.579716e-03	k: 994	n:410000
Cons ci ratio: 2.463719e-01	ci left: 5.411028e-04	ci right 6.953651e-04	k: 252	n:410000
KS ci ratio: 1.365212e-02	ci left: 1.662778e-01	ci right 1.685659e-01	k: 68642	n:410000
SF3A1   410000 perm   164 sec   (2505 perm/sec)   p_kst 1.674195e-01   p_cons 6.146341e-04   p_joint 2.424390e-03

Joint ci ratio: 1.228930e-01	ci left: 2.268117e-03	ci right 2.567385e-03	k: 1014	n:420000
Cons ci ratio: 2.454051e-01	ci left: 5.326876e-04	ci right 6.838640e-04	k: 254	n:420000
KS ci ratio: 1.348899e-02	ci left: 1.662839e-01	ci right 1.685445e-01	k: 70313	n:420000
SF3A1   420000 perm   169 sec   (2478 perm/sec)   p_kst 1.674119e-01   p_cons 6.047619e-04   p_joint 2.414286e-03

Joint ci ratio: 1.214654e-01	ci left: 2.269479e-03	ci right 2.565197e-03	k: 1038	n:430000
Cons ci ratio: 2.430343e-01	ci left: 5.312158e-04	ci right 6.802984e-04	k: 259	n:430000
KS ci ratio: 1.333279e-02	ci left: 1.662643e-01	ci right 1.684983e-01	k: 71973	n:430000
SF3A1   430000 perm   175 sec   (2453 perm/sec)   p_kst 1.673791e-01   p_cons 6.023256e-04   p_joint 2.413953e-03

Joint ci ratio: 1.182602e-01	ci left: 2.343567e-03	ci right 2.640318e-03	k: 1095	n:440000
Cons ci ratio: 2.367418e-01	ci left: 5.490494e-04	ci right 6.985629e-04	k: 273	n:440000
KS ci ratio: 1.318770e-02	ci left: 1.661234e-01	ci right 1.683310e-01	k: 73579	n:440000
SF3A1   440000 perm   181 sec   (2427 perm/sec)   p_kst 1.672250e-01   p_cons 6.204545e-04   p_joint 2.488636e-03

Joint ci ratio: 1.172491e-01	ci left: 2.332465e-03	ci right 2.625111e-03	k: 1114	n:450000
Cons ci ratio: 2.346112e-01	ci left: 5.473033e-04	ci right 6.948054e-04	k: 278	n:450000
KS ci ratio: 1.304308e-02	ci left: 1.660775e-01	ci right 1.682601e-01	k: 75225	n:450000
SF3A1   450000 perm   187 sec   (2403 perm/sec)   p_kst 1.671667e-01   p_cons 6.177778e-04   p_joint 2.475556e-03

Joint ci ratio: 1.161608e-01	ci left: 2.326078e-03	ci right 2.615028e-03	k: 1135	n:460000
Cons ci ratio: 2.317221e-01	ci left: 5.497340e-04	ci right 6.958055e-04	k: 285	n:460000
KS ci ratio: 1.290322e-02	ci left: 1.660316e-01	ci right 1.681900e-01	k: 76870	n:460000
SF3A1   460000 perm   193 sec   (2380 perm/sec)   p_kst 1.671087e-01   p_cons 6.195652e-04   p_joint 2.467391e-03

Joint ci ratio: 1.146560e-01	ci left: 2.338575e-03	ci right 2.625060e-03	k: 1165	n:470000
Cons ci ratio: 2.285473e-01	ci left: 5.540777e-04	ci right 6.990018e-04	k: 293	n:470000
KS ci ratio: 1.276932e-02	ci left: 1.659538e-01	ci right 1.680886e-01	k: 78499	n:470000
SF3A1   470000 perm   199 sec   (2357 perm/sec)   p_kst 1.670191e-01   p_cons 6.234043e-04   p_joint 2.478723e-03

Joint ci ratio: 1.131135e-01	ci left: 2.354624e-03	ci right 2.638934e-03	k: 1197	n:480000
Cons ci ratio: 2.251268e-01	ci left: 5.602193e-04	ci right 7.042526e-04	k: 302	n:480000
KS ci ratio: 1.263535e-02	ci left: 1.659708e-01	ci right 1.680832e-01	k: 80172	n:480000
SF3A1   480000 perm   206 sec   (2333 perm/sec)   p_kst 1.670250e-01   p_cons 6.291667e-04   p_joint 2.493750e-03

Joint ci ratio: 1.121816e-01	ci left: 2.346236e-03	ci right 2.627045e-03	k: 1217	n:490000
Cons ci ratio: 2.236559e-01	ci left: 5.564906e-04	ci right 6.985016e-04	k: 306	n:490000
KS ci ratio: 1.250495e-02	ci left: 1.659994e-01	ci right 1.680903e-01	k: 81851	n:490000
SF3A1   490000 perm   212 sec   (2311 perm/sec)   p_kst 1.670429e-01   p_cons 6.244898e-04   p_joint 2.483673e-03

Joint ci ratio: 1.112273e-01	ci left: 2.340137e-03	ci right 2.617678e-03	k: 1238	n:500000
Cons ci ratio: 2.222134e-01	ci left: 5.529139e-04	ci right 6.929778e-04	k: 310	n:500000
KS ci ratio: 1.237353e-02	ci left: 1.661387e-01	ci right 1.682092e-01	k: 83586	n:500000
SF3A1   500000 perm   218 sec   (2289 perm/sec)   p_kst 1.671720e-01   p_cons 6.200000e-04   p_joint 2.476000e-03

Joint ci ratio: 1.102092e-01	ci left: 2.338101e-03	ci right 2.612697e-03	k: 1261	n:510000
Cons ci ratio: 2.204487e-01	ci left: 5.513329e-04	ci right 6.897366e-04	k: 315	n:510000
KS ci ratio: 1.225375e-02	ci left: 1.661005e-01	ci right 1.681503e-01	k: 85233	n:510000
SF3A1   510000 perm   225 sec   (2268 perm/sec)   p_kst 1.671235e-01   p_cons 6.176471e-04   p_joint 2.472549e-03

Joint ci ratio: 1.096472e-01	ci left: 2.317449e-03	ci right 2.588142e-03	k: 1274	n:520000
Cons ci ratio: 2.177097e-01	ci left: 5.552709e-04	ci right 6.926997e-04	k: 323	n:520000
KS ci ratio: 1.214091e-02	ci left: 1.659833e-01	ci right 1.680127e-01	k: 86838	n:520000
SF3A1   520000 perm   231 sec   (2247 perm/sec)   p_kst 1.669962e-01   p_cons 6.211538e-04   p_joint 2.450000e-03

Joint ci ratio: 1.085459e-01	ci left: 2.321442e-03	ci right 2.589704e-03	k: 1300	n:530000
Cons ci ratio: 2.160493e-01	ci left: 5.537156e-04	ci right 6.895756e-04	k: 328	n:530000
KS ci ratio: 1.203113e-02	ci left: 1.658706e-01	ci right 1.678802e-01	k: 88443	n:530000
SF3A1   530000 perm   238 sec   (2226 perm/sec)   p_kst 1.668736e-01   p_cons 6.188679e-04   p_joint 2.452830e-03

Joint ci ratio: 1.076398e-01	ci left: 2.318091e-03	ci right 2.583588e-03	k: 1322	n:540000
Cons ci ratio: 2.141058e-01	ci left: 5.539742e-04	ci right 6.885144e-04	k: 334	n:540000
KS ci ratio: 1.191745e-02	ci left: 1.659211e-01	ci right 1.679121e-01	k: 90134	n:540000
SF3A1   540000 perm   245 sec   (2206 perm/sec)   p_kst 1.669148e-01   p_cons 6.185185e-04   p_joint 2.448148e-03

Joint ci ratio: 1.066370e-01	ci left: 2.320181e-03	ci right 2.583286e-03	k: 1347	n:550000
Cons ci ratio: 2.119032e-01	ci left: 5.559504e-04	ci right 6.894011e-04	k: 341	n:550000
KS ci ratio: 1.180654e-02	ci left: 1.659789e-01	ci right 1.679519e-01	k: 91830	n:550000
SF3A1   550000 perm   252 sec   (2186 perm/sec)   p_kst 1.669636e-01   p_cons 6.200000e-04   p_joint 2.449091e-03

Joint ci ratio: 1.056616e-01	ci left: 2.322207e-03	ci right 2.582983e-03	k: 1372	n:560000
Cons ci ratio: 2.106752e-01	ci left: 5.527875e-04	ci right 6.846107e-04	k: 345	n:560000
KS ci ratio: 1.169965e-02	ci left: 1.660115e-01	ci right 1.679670e-01	k: 93513	n:560000
SF3A1   560000 perm   258 sec   (2167 perm/sec)   p_kst 1.669875e-01   p_cons 6.160714e-04   p_joint 2.450000e-03

Joint ci ratio: 1.045254e-01	ci left: 2.332715e-03	ci right 2.591682e-03	k: 1402	n:570000
Cons ci ratio: 2.079870e-01	ci left: 5.580515e-04	ci right 6.892158e-04	k: 354	n:570000
KS ci ratio: 1.159261e-02	ci left: 1.661148e-01	ci right 1.680535e-01	k: 95237	n:570000
SF3A1   570000 perm   265 sec   (2148 perm/sec)   p_kst 1.670825e-01   p_cons 6.210526e-04   p_joint 2.459649e-03

Joint ci ratio: 1.035337e-01	ci left: 2.337837e-03	ci right 2.594760e-03	k: 1429	n:580000
Cons ci ratio: 2.062514e-01	ci left: 5.582382e-04	ci right 6.882134e-04	k: 360	n:580000
KS ci ratio: 1.148938e-02	ci left: 1.661923e-01	ci right 1.681145e-01	k: 96948	n:580000
SF3A1   580000 perm   273 sec   (2128 perm/sec)   p_kst 1.671517e-01   p_cons 6.206897e-04   p_joint 2.463793e-03

Joint ci ratio: 1.026050e-01	ci left: 2.341144e-03	ci right 2.595984e-03	k: 1455	n:590000
Cons ci ratio: 2.042802e-01	ci left: 5.600312e-04	ci right 6.890221e-04	k: 367	n:590000
KS ci ratio: 1.139060e-02	ci left: 1.662250e-01	ci right 1.681309e-01	k: 98634	n:590000
SF3A1   590000 perm   280 sec   (2110 perm/sec)   p_kst 1.671763e-01   p_cons 6.220339e-04   p_joint 2.466102e-03

Joint ci ratio: 1.016665e-01	ci left: 2.345976e-03	ci right 2.598866e-03	k: 1482	n:600000
Cons ci ratio: 2.026350e-01	ci left: 5.601879e-04	ci right 6.880471e-04	k: 373	n:600000
KS ci ratio: 1.129506e-02	ci left: 1.662383e-01	ci right 1.681283e-01	k: 100309	n:600000
SF3A1   600000 perm   287 sec   (2092 perm/sec)   p_kst 1.671817e-01   p_cons 6.216667e-04   p_joint 2.470000e-03

Joint ci ratio: 1.005864e-01	ci left: 2.358650e-03	ci right 2.610046e-03	k: 1514	n:610000
Cons ci ratio: 2.002396e-01	ci left: 5.650146e-04	ci right 6.922647e-04	k: 382	n:610000
KS ci ratio: 1.119971e-02	ci left: 1.663052e-01	ci right 1.681799e-01	k: 102017	n:610000
SF3A1   610000 perm   294 sec   (2074 perm/sec)   p_kst 1.672410e-01   p_cons 6.262295e-04   p_joint 2.481967e-03

Joint ci ratio: 9.979912e-02	ci left: 2.358347e-03	ci right 2.607628e-03	k: 1538	n:620000
Cons ci ratio: 1.994605e-01	ci left: 5.604979e-04	ci right 6.861799e-04	k: 385	n:620000
KS ci ratio: 1.110738e-02	ci left: 1.663540e-01	ci right 1.682136e-01	k: 103715	n:620000
SF3A1   620000 perm   302 sec   (2055 perm/sec)   p_kst 1.672823e-01   p_cons 6.209677e-04   p_joint 2.480645e-03

Joint ci ratio: 9.912542e-02	ci left: 2.353417e-03	ci right 2.600400e-03	k: 1559	n:630000
Cons ci ratio: 1.984353e-01	ci left: 5.576340e-04	ci right 6.819533e-04	k: 389	n:630000
KS ci ratio: 1.101742e-02	ci left: 1.663981e-01	ci right 1.682431e-01	k: 105411	n:630000
SF3A1   630000 perm   309 sec   (2037 perm/sec)   p_kst 1.673190e-01   p_cons 6.174603e-04   p_joint 2.474603e-03

Joint ci ratio: 9.827841e-02	ci left: 2.357791e-03	ci right 2.602997e-03	k: 1586	n:640000
Cons ci ratio: 1.971756e-01	ci left: 5.563465e-04	ci right 6.794968e-04	k: 394	n:640000
KS ci ratio: 1.093261e-02	ci left: 1.663645e-01	ci right 1.681948e-01	k: 107058	n:640000
SF3A1   640000 perm   317 sec   (2020 perm/sec)   p_kst 1.672781e-01   p_cons 6.156250e-04   p_joint 2.478125e-03

Joint ci ratio: 9.730178e-02	ci left: 2.369545e-03	ci right 2.613384e-03	k: 1618	n:650000
Cons ci ratio: 1.949665e-01	ci left: 5.609539e-04	ci right 6.835678e-04	k: 403	n:650000
KS ci ratio: 1.084734e-02	ci left: 1.663933e-01	ci right 1.682096e-01	k: 108745	n:650000
SF3A1   650000 perm   324 sec   (2004 perm/sec)   p_kst 1.673000e-01   p_cons 6.200000e-04   p_joint 2.489231e-03

Joint ci ratio: 9.667709e-02	ci left: 2.364689e-03	ci right 2.606378e-03	k: 1639	n:660000
Cons ci ratio: 1.935347e-01	ci left: 5.611034e-04	ci right 6.827432e-04	k: 409	n:660000
KS ci ratio: 1.076930e-02	ci left: 1.662853e-01	ci right 1.680873e-01	k: 110342	n:660000
SF3A1   660000 perm   332 sec   (1987 perm/sec)   p_kst 1.671848e-01   p_cons 6.196970e-04   p_joint 2.483333e-03

Joint ci ratio: 9.591966e-02	ci left: 2.367267e-03	ci right 2.607217e-03	k: 1665	n:670000
Cons ci ratio: 1.914445e-01	ci left: 5.655144e-04	ci right 6.866323e-04	k: 418	n:670000
KS ci ratio: 1.068799e-02	ci left: 1.663087e-01	ci right 1.680972e-01	k: 112025	n:670000
SF3A1   670000 perm   340 sec   (1971 perm/sec)   p_kst 1.672015e-01   p_cons 6.238806e-04   p_joint 2.485075e-03

Joint ci ratio: 9.515157e-02	ci left: 2.371211e-03	ci right 2.609529e-03	k: 1692	n:680000
Cons ci ratio: 1.898650e-01	ci left: 5.670008e-04	ci right 6.873196e-04	k: 425	n:680000
KS ci ratio: 1.060978e-02	ci left: 1.662976e-01	ci right 1.680729e-01	k: 113685	n:680000
SF3A1   680000 perm   348 sec   (1955 perm/sec)   p_kst 1.671838e-01   p_cons 6.250000e-04   p_joint 2.488235e-03

Joint ci ratio: 8.278325e-02	ci left: 3.105005e-03	ci right 3.374554e-03	k: 2234	n:690000
Cons ci ratio: 1.881067e-01	ci left: 5.698291e-04	ci right 6.895004e-04	k: 433	n:690000
KS ci ratio: 1.053344e-02	ci left: 1.662826e-01	ci right 1.680448e-01	k: 115342	n:690000
SF3A1   690000 perm   356 sec   (1939 perm/sec)   p_kst 1.671623e-01   p_cons 6.275362e-04   p_joint 3.237681e-03

Joint ci ratio: 7.645467e-02	ci left: 3.598348e-03	ci right 3.885783e-03	k: 2618	n:700000
Cons ci ratio: 1.868198e-01	ci left: 5.698579e-04	ci right 6.886236e-04	k: 439	n:700000
KS ci ratio: 1.045657e-02	ci left: 1.663251e-01	ci right 1.680748e-01	k: 117039	n:700000
SF3A1   700000 perm   364 sec   (1924 perm/sec)   p_kst 1.671986e-01   p_cons 6.271429e-04   p_joint 3.740000e-03

Joint ci ratio: 7.583437e-02	ci left: 3.607077e-03	ci right 3.892770e-03	k: 2661	n:710000
Cons ci ratio: 1.851440e-01	ci left: 5.725748e-04	ci right 6.907162e-04	k: 447	n:710000
KS ci ratio: 1.038472e-02	ci left: 1.662765e-01	ci right 1.680136e-01	k: 118672	n:710000
SF3A1   710000 perm   372 sec   (1909 perm/sec)   p_kst 1.671437e-01   p_cons 6.295775e-04   p_joint 3.747887e-03

Joint ci ratio: 7.527082e-02	ci left: 3.611485e-03	ci right 3.895308e-03	k: 2701	n:720000
Cons ci ratio: 1.839166e-01	ci left: 5.725708e-04	ci right 6.898408e-04	k: 453	n:720000
KS ci ratio: 1.031088e-02	ci left: 1.663221e-01	ci right 1.680473e-01	k: 120372	n:720000
SF3A1   720000 perm   380 sec   (1893 perm/sec)   p_kst 1.671833e-01   p_cons 6.291667e-04   p_joint 3.751389e-03

Joint ci ratio: 8.052710e-02	ci left: 3.105289e-03	ci right 3.367171e-03	k: 2361	n:730000
Cons ci ratio: 1.833123e-01	ci left: 5.686480e-04	ci right 6.846893e-04	k: 456	n:730000
KS ci ratio: 1.023905e-02	ci left: 1.663542e-01	ci right 1.680676e-01	k: 122063	n:730000
SF3A1   730000 perm   388 sec   (1879 perm/sec)   p_kst 1.672096e-01   p_cons 6.246575e-04   p_joint 3.234247e-03

Joint ci ratio: 7.997037e-02	ci left: 3.107025e-03	ci right 3.367158e-03	k: 2394	n:740000
Cons ci ratio: 1.825156e-01	ci left: 5.661214e-04	ci right 6.810895e-04	k: 460	n:740000
KS ci ratio: 1.017136e-02	ci left: 1.663127e-01	ci right 1.680143e-01	k: 123700	n:740000
SF3A1   740000 perm   397 sec   (1865 perm/sec)   p_kst 1.671622e-01   p_cons 6.216216e-04   p_joint 3.235135e-03

Joint ci ratio: 7.159367e-02	ci left: 3.838759e-03	ci right 4.125093e-03	k: 2985	n:750000
Cons ci ratio: 1.813394e-01	ci left: 5.662088e-04	ci right 6.803722e-04	k: 466	n:750000
KS ci ratio: 1.010423e-02	ci left: 1.662936e-01	ci right 1.679837e-01	k: 125353	n:750000
SF3A1   750000 perm   405 sec   (1851 perm/sec)   p_kst 1.671373e-01   p_cons 6.213333e-04   p_joint 3.980000e-03

Joint ci ratio: 7.127277e-02	ci left: 3.823140e-03	ci right 4.106977e-03	k: 3012	n:760000
Cons ci ratio: 1.807601e-01	ci left: 5.625270e-04	ci right 6.755462e-04	k: 469	n:760000
KS ci ratio: 1.004111e-02	ci left: 1.662002e-01	ci right 1.678787e-01	k: 126949	n:760000
SF3A1   760000 perm   414 sec   (1837 perm/sec)   p_kst 1.670382e-01   p_cons 6.171053e-04   p_joint 3.963158e-03

Joint ci ratio: 7.306105e-02	ci left: 3.588559e-03	ci right 3.861949e-03	k: 2867	n:770000
Cons ci ratio: 1.794288e-01	ci left: 5.639026e-04	ci right 6.762731e-04	k: 476	n:770000
KS ci ratio: 9.973666e-03	ci left: 1.662621e-01	ci right 1.679300e-01	k: 128663	n:770000
SF3A1   770000 perm   422 sec   (1823 perm/sec)   p_kst 1.670948e-01   p_cons 6.181818e-04   p_joint 3.723377e-03

Joint ci ratio: 7.263195e-02	ci left: 3.585347e-03	ci right 3.856821e-03	k: 2901	n:780000
Cons ci ratio: 1.781264e-01	ci left: 5.652459e-04	ci right 6.769784e-04	k: 483	n:780000
KS ci ratio: 9.911487e-03	ci left: 1.662125e-01	ci right 1.678694e-01	k: 130291	n:780000
SF3A1   780000 perm   431 sec   (1809 perm/sec)   p_kst 1.670397e-01   p_cons 6.192308e-04   p_joint 3.719231e-03

Joint ci ratio: 7.221032e-02	ci left: 3.582221e-03	ci right 3.851818e-03	k: 2935	n:790000
Cons ci ratio: 1.763139e-01	ci left: 5.701878e-04	ci right 6.816280e-04	k: 493	n:790000
KS ci ratio: 9.850592e-03	ci left: 1.661604e-01	ci right 1.678066e-01	k: 131916	n:790000
SF3A1   790000 perm   440 sec   (1797 perm/sec)   p_kst 1.669823e-01   p_cons 6.240506e-04   p_joint 3.715190e-03

Joint ci ratio: 9.874021e-02	ci left: 1.869141e-03	ci right 2.064493e-03	k: 1572	n:800000
Cons ci ratio: 1.759585e-01	ci left: 5.654501e-04	ci right 6.757180e-04	k: 495	n:800000
KS ci ratio: 9.790716e-03	ci left: 1.661122e-01	ci right 1.677477e-01	k: 133543	n:800000
SF3A1   800000 perm   448 sec   (1784 perm/sec)   p_kst 1.669287e-01   p_cons 6.187500e-04   p_joint 1.965000e-03

Joint ci ratio: 9.814927e-02	ci left: 1.868944e-03	ci right 2.063040e-03	k: 1591	n:810000
Cons ci ratio: 1.747298e-01	ci left: 5.667320e-04	ci right 6.763966e-04	k: 502	n:810000
KS ci ratio: 9.730019e-03	ci left: 1.661193e-01	ci right 1.677448e-01	k: 135214	n:810000
SF3A1   810000 perm   457 sec   (1771 perm/sec)   p_kst 1.669309e-01   p_cons 6.197531e-04   p_joint 1.964198e-03

Joint ci ratio: 9.753848e-02	ci left: 1.869946e-03	ci right 2.062868e-03	k: 1611	n:820000
Cons ci ratio: 1.731870e-01	ci left: 5.703184e-04	ci right 6.796007e-04	k: 511	n:820000
KS ci ratio: 9.672811e-03	ci left: 1.660582e-01	ci right 1.676734e-01	k: 136829	n:820000
SF3A1   820000 perm   466 sec   (1759 perm/sec)   p_kst 1.668646e-01   p_cons 6.231707e-04   p_joint 1.964634e-03

Joint ci ratio: 9.693896e-02	ci left: 1.870927e-03	ci right 2.062696e-03	k: 1631	n:830000
Cons ci ratio: 1.723476e-01	ci left: 5.692107e-04	ci right 6.776972e-04	k: 516	n:830000
KS ci ratio: 9.611144e-03	ci left: 1.661561e-01	ci right 1.677619e-01	k: 138575	n:830000
SF3A1   830000 perm   475 sec   (1746 perm/sec)   p_kst 1.669578e-01   p_cons 6.216867e-04   p_joint 1.965060e-03

Joint ci ratio: 9.605948e-02	ci left: 1.883507e-03	ci right 2.074716e-03	k: 1661	n:840000
Cons ci ratio: 1.707042e-01	ci left: 5.738282e-04	ci right 6.820445e-04	k: 526	n:840000
KS ci ratio: 9.552520e-03	ci left: 1.661970e-01	ci right 1.677934e-01	k: 140275	n:840000
SF3A1   840000 perm   484 sec   (1734 perm/sec)   p_kst 1.669940e-01   p_cons 6.261905e-04   p_joint 1.977381e-03

Joint ci ratio: 6.927460e-02	ci left: 3.622901e-03	ci right 3.884028e-03	k: 3189	n:850000
Cons ci ratio: 1.695816e-01	ci left: 5.749619e-04	ci right 6.826061e-04	k: 533	n:850000
KS ci ratio: 9.496562e-03	ci left: 1.661900e-01	ci right 1.677769e-01	k: 141935	n:850000
SF3A1   850000 perm   494 sec   (1722 perm/sec)   p_kst 1.669824e-01   p_cons 6.270588e-04   p_joint 3.751765e-03

Joint ci ratio: 9.506398e-02	ci left: 1.879429e-03	ci right 2.068137e-03	k: 1696	n:860000
Cons ci ratio: 1.687933e-01	ci left: 5.738441e-04	ci right 6.807288e-04	k: 538	n:860000
KS ci ratio: 9.442366e-03	ci left: 1.661600e-01	ci right 1.677376e-01	k: 143575	n:860000
SF3A1   860000 perm   503 sec   (1710 perm/sec)   p_kst 1.669477e-01   p_cons 6.255814e-04   p_joint 1.972093e-03

Joint ci ratio: 6.809851e-02	ci left: 3.665013e-03	ci right 3.924514e-03	k: 3300	n:870000
Cons ci ratio: 1.672486e-01	ci left: 5.782592e-04	ci right 6.848813e-04	k: 548	n:870000
KS ci ratio: 9.386294e-03	ci left: 1.662134e-01	ci right 1.677820e-01	k: 145287	n:870000
SF3A1   870000 perm   513 sec   (1697 perm/sec)   p_kst 1.669966e-01   p_cons 6.298851e-04   p_joint 3.793103e-03

Joint ci ratio: 6.807928e-02	ci left: 3.625597e-03	ci right 3.882232e-03	k: 3302	n:880000
Cons ci ratio: 1.661924e-01	ci left: 5.793107e-04	ci right 6.853847e-04	k: 555	n:880000
KS ci ratio: 9.333419e-03	ci left: 1.661997e-01	ci right 1.677593e-01	k: 146941	n:880000
SF3A1   880000 perm   522 sec   (1686 perm/sec)   p_kst 1.669784e-01   p_cons 6.306818e-04   p_joint 3.752273e-03

Joint ci ratio: 7.290118e-02	ci left: 3.120124e-03	ci right 3.357284e-03	k: 2881	n:890000
Cons ci ratio: 1.651559e-01	ci left: 5.803407e-04	ci right 6.858747e-04	k: 562	n:890000
KS ci ratio: 9.283641e-03	ci left: 1.661202e-01	ci right 1.676707e-01	k: 148536	n:890000
SF3A1   890000 perm   532 sec   (1673 perm/sec)   p_kst 1.668944e-01   p_cons 6.314607e-04   p_joint 3.237079e-03

Joint ci ratio: 7.249980e-02	ci left: 3.120365e-03	ci right 3.356183e-03	k: 2913	n:900000
Cons ci ratio: 1.635654e-01	ci left: 5.856121e-04	ci right 6.909782e-04	k: 573	n:900000
KS ci ratio: 9.230961e-03	ci left: 1.661534e-01	ci right 1.676954e-01	k: 150231	n:900000
SF3A1   900000 perm   541 sec   (1662 perm/sec)   p_kst 1.669233e-01   p_cons 6.366667e-04   p_joint 3.236667e-03

Joint ci ratio: 6.522213e-02	ci left: 3.824860e-03	ci right 4.083808e-03	k: 3597	n:910000
Cons ci ratio: 1.631399e-01	ci left: 5.823387e-04	ci right 6.868165e-04	k: 576	n:910000
KS ci ratio: 9.179203e-03	ci left: 1.661848e-01	ci right 1.677184e-01	k: 151925	n:910000
SF3A1   910000 perm   551 sec   (1651 perm/sec)   p_kst 1.669505e-01   p_cons 6.329670e-04   p_joint 3.952747e-03

Joint ci ratio: 6.488047e-02	ci left: 3.823918e-03	ci right 4.081395e-03	k: 3635	n:920000
Cons ci ratio: 1.618820e-01	ci left: 5.853937e-04	ci right 6.895311e-04	k: 585	n:920000
KS ci ratio: 9.129733e-03	ci left: 1.661722e-01	ci right 1.676973e-01	k: 153579	n:920000
SF3A1   920000 perm   561 sec   (1640 perm/sec)   p_kst 1.669337e-01   p_cons 6.358696e-04   p_joint 3.951087e-03

Joint ci ratio: 9.151952e-02	ci left: 1.878692e-03	ci right 2.059916e-03	k: 1830	n:930000
Cons ci ratio: 1.609237e-01	ci left: 5.863221e-04	ci right 6.899474e-04	k: 592	n:930000
KS ci ratio: 9.082846e-03	ci left: 1.661051e-01	ci right 1.676217e-01	k: 155182	n:930000
SF3A1   930000 perm   571 sec   (1629 perm/sec)   p_kst 1.668624e-01   p_cons 6.365591e-04   p_joint 1.967742e-03

Joint ci ratio: 9.104837e-02	ci left: 1.878457e-03	ci right 2.058676e-03	k: 1849	n:940000
Cons ci ratio: 1.601157e-01	ci left: 5.862112e-04	ci right 6.892467e-04	k: 598	n:940000
KS ci ratio: 9.034460e-03	ci left: 1.661074e-01	ci right 1.676159e-01	k: 156849	n:940000
SF3A1   940000 perm   581 sec   (1618 perm/sec)   p_kst 1.668606e-01   p_cons 6.361702e-04   p_joint 1.967021e-03

Joint ci ratio: 9.015050e-02	ci left: 1.896750e-03	ci right 2.076834e-03	k: 1886	n:950000
Cons ci ratio: 1.594517e-01	ci left: 5.850932e-04	ci right 6.874649e-04	k: 603	n:950000
KS ci ratio: 8.984901e-03	ci left: 1.661696e-01	ci right 1.676704e-01	k: 158573	n:950000
SF3A1   950000 perm   591 sec   (1608 perm/sec)   p_kst 1.669189e-01   p_cons 6.347368e-04   p_joint 1.985263e-03

Joint ci ratio: 8.977090e-02	ci left: 1.893284e-03	ci right 2.072242e-03	k: 1902	n:960000
Cons ci ratio: 1.586656e-01	ci left: 5.849997e-04	ci right 6.868024e-04	k: 609	n:960000
KS ci ratio: 8.938391e-03	ci left: 1.661608e-01	ci right 1.676537e-01	k: 160230	n:960000
SF3A1   960000 perm   601 sec   (1597 perm/sec)   p_kst 1.669063e-01   p_cons 6.343750e-04   p_joint 1.981250e-03

Joint ci ratio: 8.951297e-02	ci left: 1.884851e-03	ci right 2.062474e-03	k: 1913	n:970000
Cons ci ratio: 1.581482e-01	ci left: 5.829290e-04	ci right 6.840091e-04	k: 613	n:970000
KS ci ratio: 8.892463e-03	ci left: 1.661564e-01	ci right 1.676415e-01	k: 161891	n:970000
SF3A1   970000 perm   612 sec   (1586 perm/sec)   p_kst 1.668979e-01   p_cons 6.319588e-04   p_joint 1.972165e-03

Joint ci ratio: 8.886495e-02	ci left: 1.893552e-03	ci right 2.070636e-03	k: 1941	n:980000
Cons ci ratio: 1.571277e-01	ci left: 5.848220e-04	ci right 6.855144e-04	k: 621	n:980000
KS ci ratio: 8.847009e-03	ci left: 1.661592e-01	ci right 1.676367e-01	k: 163559	n:980000
SF3A1   980000 perm   622 sec   (1576 perm/sec)   p_kst 1.668969e-01   p_cons 6.336735e-04   p_joint 1.980612e-03

Joint ci ratio: 8.852395e-02	ci left: 1.889241e-03	ci right 2.065209e-03	k: 1956	n:990000
Cons ci ratio: 1.565001e-01	ci left: 5.837670e-04	ci right 6.838386e-04	k: 626	n:990000
KS ci ratio: 8.803556e-03	ci left: 1.661206e-01	ci right 1.675905e-01	k: 165186	n:990000
SF3A1   990000 perm   632 sec   (1566 perm/sec)   p_kst 1.668545e-01   p_cons 6.323232e-04   p_joint 1.975758e-03

Joint ci ratio: 8.796364e-02	ci left: 1.894797e-03	ci right 2.070108e-03	k: 1981	n:1000000
Cons ci ratio: 1.556337e-01	ci left: 5.846560e-04	ci right 6.842733e-04	k: 633	n:1000000
KS ci ratio: 8.758532e-03	ci left: 1.661527e-01	ci right 1.676153e-01	k: 166883	n:1000000
SF3A1   1000000 perm   643 sec   (1555 perm/sec)   p_kst 1.668830e-01   p_cons 6.330000e-04   p_joint 1.981000e-03

Joint ci ratio: 8.752316e-02	ci left: 1.895404e-03	ci right 2.069848e-03	k: 2001	n:1010000
Cons ci ratio: 1.551452e-01	ci left: 5.826737e-04	ci right 6.816126e-04	k: 637	n:1010000
KS ci ratio: 8.714316e-03	ci left: 1.661802e-01	ci right 1.676356e-01	k: 168576	n:1010000
SF3A1   1010000 perm   654 sec   (1545 perm/sec)   p_kst 1.669069e-01   p_cons 6.306931e-04   p_joint 1.981188e-03

Joint ci ratio: 8.713241e-02	ci left: 1.894083e-03	ci right 2.067588e-03	k: 2019	n:1020000
Cons ci ratio: 1.546613e-01	ci left: 5.807307e-04	ci right 6.790037e-04	k: 641	n:1020000
KS ci ratio: 8.669142e-03	ci left: 1.662590e-01	ci right 1.677076e-01	k: 170322	n:1020000
SF3A1   1020000 perm   664 sec   (1536 perm/sec)   p_kst 1.669824e-01   p_cons 6.284314e-04   p_joint 1.979412e-03

Joint ci ratio: 8.672553e-02	ci left: 1.893740e-03	ci right 2.066362e-03	k: 2038	n:1030000
Cons ci ratio: 1.537065e-01	ci left: 5.825600e-04	ci right 6.804778e-04	k: 649	n:1030000
KS ci ratio: 8.628668e-03	ci left: 1.662075e-01	ci right 1.676488e-01	k: 171935	n:1030000
SF3A1   1030000 perm   675 sec   (1526 perm/sec)   p_kst 1.669272e-01   p_cons 6.300971e-04   p_joint 1.978641e-03

Joint ci ratio: 8.547536e-02	ci left: 1.931982e-03	ci right 2.105425e-03	k: 2098	n:1040000
Cons ci ratio: 1.530019e-01	ci left: 5.825063e-04	ci right 6.799252e-04	k: 655	n:1040000
KS ci ratio: 8.587448e-03	ci left: 1.661992e-01	ci right 1.676335e-01	k: 173592	n:1040000
SF3A1   1040000 perm   686 sec   (1517 perm/sec)   p_kst 1.669154e-01   p_cons 6.298077e-04   p_joint 2.017308e-03

Joint ci ratio: 8.572206e-02	ci left: 1.902397e-03	ci right 2.073702e-03	k: 2086	n:1050000
Cons ci ratio: 1.523070e-01	ci left: 5.824546e-04	ci right 6.793821e-04	k: 661	n:1050000
KS ci ratio: 8.547077e-03	ci left: 1.661825e-01	ci right 1.676099e-01	k: 175240	n:1050000
SF3A1   1050000 perm   696 sec   (1508 perm/sec)   p_kst 1.668952e-01   p_cons 6.295238e-04   p_joint 1.986667e-03

Joint ci ratio: 8.537516e-02	ci left: 1.900145e-03	ci right 2.070519e-03	k: 2103	n:1060000
Cons ci ratio: 1.515081e-01	ci left: 5.833125e-04	ci right 6.798274e-04	k: 668	n:1060000
KS ci ratio: 8.507501e-03	ci left: 1.661586e-01	ci right 1.675791e-01	k: 176880	n:1060000
SF3A1   1060000 perm   708 sec   (1498 perm/sec)   p_kst 1.668679e-01   p_cons 6.301887e-04   p_joint 1.983962e-03

Joint ci ratio: 6.574763e-02	ci left: 3.202324e-03	ci right 3.420939e-03	k: 3542	n:1070000
Cons ci ratio: 1.508332e-01	ci left: 5.832564e-04	ci right 6.792933e-04	k: 674	n:1070000
KS ci ratio: 8.467275e-03	ci left: 1.661743e-01	ci right 1.675882e-01	k: 178562	n:1070000
SF3A1   1070000 perm   719 sec   (1489 perm/sec)   p_kst 1.668804e-01   p_cons 6.299065e-04   p_joint 3.310280e-03

Joint ci ratio: 6.541604e-02	ci left: 3.205460e-03	ci right 3.423143e-03	k: 3578	n:1080000
Cons ci ratio: 1.500571e-01	ci left: 5.840934e-04	ci right 6.797288e-04	k: 681	n:1080000
KS ci ratio: 8.427052e-03	ci left: 1.662083e-01	ci right 1.676157e-01	k: 180264	n:1080000
SF3A1   1080000 perm   730 sec   (1480 perm/sec)   p_kst 1.669111e-01   p_cons 6.305556e-04   p_joint 3.312963e-03

Joint ci ratio: 6.550892e-02	ci left: 3.167026e-03	ci right 3.382416e-03	k: 3568	n:1090000
Cons ci ratio: 1.495101e-01	ci left: 5.831499e-04	ci right 6.782518e-04	k: 686	n:1090000
KS ci ratio: 8.387203e-03	ci left: 1.662480e-01	ci right 1.676492e-01	k: 181973	n:1090000
SF3A1   1090000 perm   741 sec   (1471 perm/sec)   p_kst 1.669477e-01   p_cons 6.293578e-04   p_joint 3.273394e-03

Joint ci ratio: 8.393179e-02	ci left: 1.896007e-03	ci right 2.062996e-03	k: 2176	n:1100000
Cons ci ratio: 1.489691e-01	ci left: 5.822243e-04	ci right 6.768009e-04	k: 691	n:1100000
KS ci ratio: 8.348842e-03	ci left: 1.662562e-01	ci right 1.676510e-01	k: 183648	n:1100000
SF3A1   1100000 perm   752 sec   (1463 perm/sec)   p_kst 1.669527e-01   p_cons 6.281818e-04   p_joint 1.978182e-03

Joint ci ratio: 8.360609e-02	ci left: 1.893921e-03	ci right 2.060047e-03	k: 2193	n:1110000
Cons ci ratio: 1.488619e-01	ci left: 5.778462e-04	ci right 6.716382e-04	k: 692	n:1110000
KS ci ratio: 8.312079e-03	ci left: 1.662283e-01	ci right 1.676167e-01	k: 185283	n:1110000
SF3A1   1110000 perm   764 sec   (1454 perm/sec)   p_kst 1.669216e-01   p_cons 6.234234e-04   p_joint 1.975676e-03

Joint ci ratio: 8.334083e-02	ci left: 1.889249e-03	ci right 2.054415e-03	k: 2207	n:1120000
Cons ci ratio: 1.485410e-01	ci left: 5.752657e-04	ci right 6.684196e-04	k: 695	n:1120000
KS ci ratio: 8.275214e-03	ci left: 1.662205e-01	ci right 1.676026e-01	k: 186940	n:1120000
SF3A1   1120000 perm   775 sec   (1445 perm/sec)   p_kst 1.669107e-01   p_cons 6.205357e-04   p_joint 1.970536e-03

Joint ci ratio: 8.292863e-02	ci left: 1.891595e-03	ci right 2.056107e-03	k: 2229	n:1130000
Cons ci ratio: 1.481161e-01	ci left: 5.735833e-04	ci right 6.661756e-04	k: 699	n:1130000
KS ci ratio: 8.237418e-03	ci left: 1.662606e-01	ci right 1.676367e-01	k: 188651	n:1130000
SF3A1   1130000 perm   787 sec   (1437 perm/sec)   p_kst 1.669478e-01   p_cons 6.185841e-04   p_joint 1.972566e-03

Joint ci ratio: 8.248579e-02	ci left: 1.895619e-03	ci right 2.059559e-03	k: 2253	n:1140000
Cons ci ratio: 1.472768e-01	ci left: 5.753101e-04	ci right 6.676086e-04	k: 707	n:1140000
KS ci ratio: 8.200188e-03	ci left: 1.662982e-01	ci right 1.676684e-01	k: 190360	n:1140000
SF3A1   1140000 perm   798 sec   (1428 perm/sec)   p_kst 1.669825e-01   p_cons 6.201754e-04   p_joint 1.976316e-03

Joint ci ratio: 8.215846e-02	ci left: 1.894465e-03	ci right 2.057624e-03	k: 2271	n:1150000
Cons ci ratio: 1.462474e-01	ci left: 5.786838e-04	ci right 6.708179e-04	k: 717	n:1150000
KS ci ratio: 8.162361e-03	ci left: 1.663726e-01	ci right 1.677370e-01	k: 192112	n:1150000
SF3A1   1150000 perm   810 sec   (1420 perm/sec)   p_kst 1.670539e-01   p_cons 6.234783e-04   p_joint 1.974783e-03

Joint ci ratio: 8.181709e-02	ci left: 1.894177e-03	ci right 2.056601e-03	k: 2290	n:1160000
Cons ci ratio: 1.454392e-01	ci left: 5.803401e-04	ci right 6.721830e-04	k: 725	n:1160000
KS ci ratio: 8.127192e-03	ci left: 1.663724e-01	ci right 1.677309e-01	k: 193779	n:1160000
SF3A1   1160000 perm   821 sec   (1412 perm/sec)   p_kst 1.670509e-01   p_cons 6.250000e-04   p_joint 1.974138e-03

Joint ci ratio: 6.324576e-02	ci left: 3.169124e-03	ci right 3.376937e-03	k: 3828	n:1170000
Cons ci ratio: 1.450404e-01	ci left: 5.786745e-04	ci right 6.699809e-04	k: 729	n:1170000
KS ci ratio: 8.092199e-03	ci left: 1.663817e-01	ci right 1.677344e-01	k: 195457	n:1170000
SF3A1   1170000 perm   833 sec   (1404 perm/sec)   p_kst 1.670573e-01   p_cons 6.230769e-04   p_joint 3.271795e-03

Joint ci ratio: 6.300770e-02	ci left: 3.166455e-03	ci right 3.373283e-03	k: 3857	n:1180000
Cons ci ratio: 1.443499e-01	ci left: 5.794879e-04	ci right 6.704499e-04	k: 736	n:1180000
KS ci ratio: 8.059251e-03	ci left: 1.663359e-01	ci right 1.676827e-01	k: 197070	n:1180000
SF3A1   1180000 perm   845 sec   (1396 perm/sec)   p_kst 1.670085e-01   p_cons 6.237288e-04   p_joint 3.268644e-03

Joint ci ratio: 6.275612e-02	ci left: 3.165487e-03	ci right 3.371397e-03	k: 3888	n:1190000
Cons ci ratio: 1.439599e-01	ci left: 5.778584e-04	ci right 6.682984e-04	k: 740	n:1190000
KS ci ratio: 8.025077e-03	ci left: 1.663470e-01	ci right 1.676882e-01	k: 198750	n:1190000
SF3A1   1190000 perm   857 sec   (1388 perm/sec)   p_kst 1.670168e-01   p_cons 6.218487e-04   p_joint 3.267227e-03

Joint ci ratio: 6.247556e-02	ci left: 3.167818e-03	ci right 3.372925e-03	k: 3923	n:1200000
Cons ci ratio: 1.428079e-01	ci left: 5.826842e-04	ci right 6.730876e-04	k: 752	n:1200000
KS ci ratio: 7.993010e-03	ci left: 1.662998e-01	ci right 1.676352e-01	k: 200360	n:1200000
SF3A1   1200000 perm   869 sec   (1380 perm/sec)   p_kst 1.669667e-01   p_cons 6.266667e-04   p_joint 3.269167e-03

Joint ci ratio: 5.594956e-02	ci left: 3.927426e-03	ci right 4.154297e-03	k: 4888	n:1210000
Cons ci ratio: 1.413138e-01	ci left: 5.906220e-04	ci right 6.812175e-04	k: 768	n:1210000
KS ci ratio: 7.959834e-03	ci left: 1.663053e-01	ci right 1.676351e-01	k: 202033	n:1210000
SF3A1   1210000 perm   882 sec   (1372 perm/sec)   p_kst 1.669694e-01   p_cons 6.347107e-04   p_joint 4.039669e-03

Joint ci ratio: 6.180147e-02	ci left: 3.185284e-03	ci right 3.389217e-03	k: 4009	n:1220000
Cons ci ratio: 1.409479e-01	ci left: 5.889437e-04	ci right 6.790282e-04	k: 772	n:1220000
KS ci ratio: 7.926133e-03	ci left: 1.663435e-01	ci right 1.676680e-01	k: 203746	n:1220000
SF3A1   1220000 perm   894 sec   (1364 perm/sec)   p_kst 1.670049e-01   p_cons 6.327869e-04   p_joint 3.286066e-03

Joint ci ratio: 6.155637e-02	ci left: 3.185002e-03	ci right 3.388080e-03	k: 4041	n:1230000
Cons ci ratio: 1.401343e-01	ci left: 5.912154e-04	ci right 6.810817e-04	k: 781	n:1230000
KS ci ratio: 7.894310e-03	ci left: 1.663299e-01	ci right 1.676489e-01	k: 205396	n:1230000
SF3A1   1230000 perm   907 sec   (1357 perm/sec)   p_kst 1.669886e-01   p_cons 6.349593e-04   p_joint 3.285366e-03

Joint ci ratio: 6.129906e-02	ci left: 3.186315e-03	ci right 3.388597e-03	k: 4075	n:1240000
Cons ci ratio: 1.394229e-01	ci left: 5.926736e-04	ci right 6.822662e-04	k: 789	n:1240000
KS ci ratio: 7.862776e-03	ci left: 1.663197e-01	ci right 1.676334e-01	k: 207050	n:1240000
SF3A1   1240000 perm   919 sec   (1349 perm/sec)   p_kst 1.669758e-01   p_cons 6.362903e-04   p_joint 3.286290e-03

Joint ci ratio: 6.103751e-02	ci left: 3.188396e-03	ci right 3.389916e-03	k: 4110	n:1250000
Cons ci ratio: 1.392469e-01	ci left: 5.894763e-04	ci right 6.784639e-04	k: 791	n:1250000
KS ci ratio: 7.831121e-03	ci left: 1.663274e-01	ci right 1.676358e-01	k: 208726	n:1250000
SF3A1   1250000 perm   932 sec   (1342 perm/sec)   p_kst 1.669808e-01   p_cons 6.328000e-04   p_joint 3.288000e-03

Joint ci ratio: 6.079399e-02	ci left: 3.188883e-03	ci right 3.389601e-03	k: 4143	n:1260000
Cons ci ratio: 1.385489e-01	ci left: 5.909265e-04	ci right 6.796489e-04	k: 799	n:1260000
KS ci ratio: 7.799290e-03	ci left: 1.663547e-01	ci right 1.676580e-01	k: 210427	n:1260000
SF3A1   1260000 perm   944 sec   (1335 perm/sec)   p_kst 1.670056e-01   p_cons 6.341270e-04   p_joint 3.288095e-03

Joint ci ratio: 6.048077e-02	ci left: 3.197119e-03	ci right 3.397283e-03	k: 4186	n:1270000
Cons ci ratio: 1.381180e-01	ci left: 5.900743e-04	ci right 6.783706e-04	k: 804	n:1270000
KS ci ratio: 7.769228e-03	ci left: 1.663320e-01	ci right 1.676301e-01	k: 212065	n:1270000
SF3A1   1270000 perm   957 sec   (1328 perm/sec)   p_kst 1.669803e-01   p_cons 6.330709e-04   p_joint 3.296063e-03

Joint ci ratio: 6.027250e-02	ci left: 3.194456e-03	ci right 3.393740e-03	k: 4215	n:1280000
Cons ci ratio: 1.376911e-01	ci left: 5.892358e-04	ci right 6.771117e-04	k: 809	n:1280000
KS ci ratio: 7.738468e-03	ci left: 1.663472e-01	ci right 1.676402e-01	k: 213751	n:1280000
SF3A1   1280000 perm   969 sec   (1320 perm/sec)   p_kst 1.669930e-01   p_cons 6.320312e-04   p_joint 3.292969e-03

Joint ci ratio: 6.003090e-02	ci left: 3.195653e-03	ci right 3.394185e-03	k: 4249	n:1290000
Cons ci ratio: 1.372682e-01	ci left: 5.884107e-04	ci right 6.758720e-04	k: 814	n:1290000
KS ci ratio: 7.708457e-03	ci left: 1.663482e-01	ci right 1.676362e-01	k: 215419	n:1290000
SF3A1   1290000 perm   982 sec   (1313 perm/sec)   p_kst 1.669915e-01   p_cons 6.310078e-04   p_joint 3.293798e-03

Joint ci ratio: 5.986232e-02	ci left: 3.189255e-03	ci right 3.386814e-03	k: 4273	n:1300000
Cons ci ratio: 1.370164e-01	ci left: 5.861130e-04	ci right 6.730599e-04	k: 817	n:1300000
KS ci ratio: 7.679770e-03	ci left: 1.663139e-01	ci right 1.675968e-01	k: 217041	n:1300000
SF3A1   1300000 perm   995 sec   (1306 perm/sec)   p_kst 1.669546e-01   p_cons 6.284615e-04   p_joint 3.286923e-03

Joint ci ratio: 5.982798e-02	ci left: 3.168668e-03	ci right 3.364836e-03	k: 4278	n:1310000
Cons ci ratio: 1.365996e-01	ci left: 5.853250e-04	ci right 6.718694e-04	k: 822	n:1310000
KS ci ratio: 7.649322e-03	ci left: 1.663556e-01	ci right 1.676337e-01	k: 218762	n:1310000
SF3A1   1310000 perm   1008 sec   (1299 perm/sec)   p_kst 1.669939e-01   p_cons 6.274809e-04   p_joint 3.265649e-03

Joint ci ratio: 5.956396e-02	ci left: 3.173022e-03	ci right 3.368562e-03	k: 4316	n:1320000
Cons ci ratio: 1.359404e-01	ci left: 5.867447e-04	ci right 6.730466e-04	k: 830	n:1320000
KS ci ratio: 7.620623e-03	ci left: 1.663459e-01	ci right 1.676192e-01	k: 220416	n:1320000
SF3A1   1320000 perm   1021 sec   (1293 perm/sec)   p_kst 1.669818e-01   p_cons 6.287879e-04   p_joint 3.269697e-03

Joint ci ratio: 5.929657e-02	ci left: 3.178052e-03	ci right 3.372993e-03	k: 4355	n:1330000
Cons ci ratio: 1.351296e-01	ci left: 5.895970e-04	ci right 6.757596e-04	k: 840	n:1330000
KS ci ratio: 7.591260e-03	ci left: 1.663725e-01	ci right 1.676410e-01	k: 222118	n:1330000
SF3A1   1330000 perm   1034 sec   (1286 perm/sec)   p_kst 1.670060e-01   p_cons 6.315789e-04   p_joint 3.274436e-03

Joint ci ratio: 5.909349e-02	ci left: 3.176392e-03	ci right 3.370541e-03	k: 4385	n:1340000
Cons ci ratio: 1.347298e-01	ci left: 5.888024e-04	ci right 6.745738e-04	k: 845	n:1340000
KS ci ratio: 7.562152e-03	ci left: 1.664016e-01	ci right 1.676655e-01	k: 223824	n:1340000
SF3A1   1340000 perm   1048 sec   (1279 perm/sec)   p_kst 1.670328e-01   p_cons 6.305970e-04   p_joint 3.272388e-03

Joint ci ratio: 5.892597e-02	ci left: 3.171108e-03	ci right 3.364366e-03	k: 4410	n:1350000
Cons ci ratio: 1.345710e-01	ci left: 5.858724e-04	ci right 6.711084e-04	k: 847	n:1350000
KS ci ratio: 7.532796e-03	ci left: 1.664518e-01	ci right 1.677111e-01	k: 225559	n:1350000
SF3A1   1350000 perm   1061 sec   (1273 perm/sec)   p_kst 1.670807e-01   p_cons 6.274074e-04   p_joint 3.266667e-03

Joint ci ratio: 5.866705e-02	ci left: 3.176046e-03	ci right 3.368726e-03	k: 4449	n:1360000
Cons ci ratio: 1.340190e-01	ci left: 5.865387e-04	ci right 6.714937e-04	k: 854	n:1360000
KS ci ratio: 7.505939e-03	ci left: 1.664212e-01	ci right 1.676758e-01	k: 227185	n:1360000
SF3A1   1360000 perm   1074 sec   (1266 perm/sec)   p_kst 1.670478e-01   p_cons 6.279412e-04   p_joint 3.271324e-03

Joint ci ratio: 5.846380e-02	ci left: 3.175160e-03	ci right 3.367095e-03	k: 4480	n:1370000
Cons ci ratio: 1.335512e-01	ci left: 5.864904e-04	ci right 6.711183e-04	k: 860	n:1370000
KS ci ratio: 7.478308e-03	ci left: 1.664305e-01	ci right 1.676804e-01	k: 228865	n:1370000
SF3A1   1370000 perm   1088 sec   (1260 perm/sec)   p_kst 1.670547e-01   p_cons 6.277372e-04   p_joint 3.270073e-03

Joint ci ratio: 5.831454e-02	ci left: 3.168575e-03	ci right 3.359607e-03	k: 4503	n:1380000
Cons ci ratio: 1.333193e-01	ci left: 5.843417e-04	ci right 6.685016e-04	k: 863	n:1380000
KS ci ratio: 7.451000e-03	ci left: 1.664388e-01	ci right 1.676843e-01	k: 230544	n:1380000
SF3A1   1380000 perm   1101 sec   (1253 perm/sec)   p_kst 1.670609e-01   p_cons 6.253623e-04   p_joint 3.263043e-03

Joint ci ratio: 5.811492e-02	ci left: 3.167757e-03	ci right 3.358063e-03	k: 4534	n:1390000
Cons ci ratio: 1.327825e-01	ci left: 5.850062e-04	ci right 6.688958e-04	k: 870	n:1390000
KS ci ratio: 7.424161e-03	ci left: 1.664406e-01	ci right 1.676816e-01	k: 232214	n:1390000
SF3A1   1390000 perm   1115 sec   (1247 perm/sec)   p_kst 1.670604e-01   p_cons 6.258993e-04   p_joint 3.261871e-03

Joint ci ratio: 5.788555e-02	ci left: 3.170471e-03	ci right 3.360164e-03	k: 4570	n:1400000
Cons ci ratio: 1.321768e-01	ci left: 5.863525e-04	ci right 6.700215e-04	k: 878	n:1400000
KS ci ratio: 7.398199e-03	ci left: 1.664203e-01	ci right 1.676568e-01	k: 233853	n:1400000
SF3A1   1400000 perm   1129 sec   (1240 perm/sec)   p_kst 1.670379e-01   p_cons 6.271429e-04   p_joint 3.264286e-03

Joint ci ratio: 5.771546e-02	ci left: 3.166858e-03	ci right 3.355759e-03	k: 4597	n:1410000
Cons ci ratio: 1.317280e-01	ci left: 5.863088e-04	ci right 6.696652e-04	k: 884	n:1410000
KS ci ratio: 7.370911e-03	ci left: 1.664605e-01	ci right 1.676927e-01	k: 235577	n:1410000
SF3A1   1410000 perm   1142 sec   (1234 perm/sec)   p_kst 1.670759e-01   p_cons 6.269504e-04   p_joint 3.260284e-03

Joint ci ratio: 5.751568e-02	ci left: 3.166766e-03	ci right 3.354987e-03	k: 4629	n:1420000
Cons ci ratio: 1.311365e-01	ci left: 5.876285e-04	ci right 6.707682e-04	k: 892	n:1420000
KS ci ratio: 7.345018e-03	ci left: 1.664586e-01	ci right 1.676864e-01	k: 237242	n:1420000
SF3A1   1420000 perm   1156 sec   (1228 perm/sec)   p_kst 1.670718e-01   p_cons 6.281690e-04   p_joint 3.259859e-03

Joint ci ratio: 5.727483e-02	ci left: 3.171503e-03	ci right 3.359189e-03	k: 4668	n:1430000
Cons ci ratio: 1.306982e-01	ci left: 5.875776e-04	ci right 6.704107e-04	k: 898	n:1430000
KS ci ratio: 7.319084e-03	ci left: 1.664686e-01	ci right 1.676922e-01	k: 238924	n:1430000
SF3A1   1430000 perm   1170 sec   (1222 perm/sec)   p_kst 1.670797e-01   p_cons 6.279720e-04   p_joint 3.264336e-03

Joint ci ratio: 5.709176e-02	ci left: 3.170014e-03	ci right 3.356993e-03	k: 4698	n:1440000
Cons ci ratio: 1.303363e-01	ci left: 5.868560e-04	ci right 6.693406e-04	k: 903	n:1440000
KS ci ratio: 7.292713e-03	ci left: 1.665056e-01	ci right 1.677249e-01	k: 240645	n:1440000
SF3A1   1440000 perm   1184 sec   (1216 perm/sec)   p_kst 1.671146e-01   p_cons 6.270833e-04   p_joint 3.262500e-03

Joint ci ratio: 5.679008e-02	ci left: 3.182144e-03	ci right 3.368814e-03	k: 4748	n:1450000
Cons ci ratio: 1.298345e-01	ci left: 5.874792e-04	ci right 6.697090e-04	k: 910	n:1450000
KS ci ratio: 7.266229e-03	ci left: 1.665571e-01	ci right 1.677725e-01	k: 242388	n:1450000
SF3A1   1450000 perm   1198 sec   (1210 perm/sec)   p_kst 1.671641e-01   p_cons 6.275862e-04   p_joint 3.274483e-03

Joint ci ratio: 5.658191e-02	ci left: 3.183981e-03	ci right 3.370052e-03	k: 4783	n:1460000
Cons ci ratio: 1.295505e-01	ci left: 5.861062e-04	ci right 6.679506e-04	k: 914	n:1460000
KS ci ratio: 7.241758e-03	ci left: 1.665417e-01	ci right 1.677528e-01	k: 244034	n:1460000
SF3A1   1460000 perm   1212 sec   (1204 perm/sec)   p_kst 1.671466e-01   p_cons 6.260274e-04   p_joint 3.276027e-03

Joint ci ratio: 5.636429e-02	ci left: 3.187136e-03	ci right 3.372652e-03	k: 4820	n:1470000
Cons ci ratio: 1.290578e-01	ci left: 5.867270e-04	ci right 6.683225e-04	k: 921	n:1470000
KS ci ratio: 7.216493e-03	ci left: 1.665665e-01	ci right 1.677736e-01	k: 245739	n:1470000
SF3A1   1470000 perm   1227 sec   (1198 perm/sec)   p_kst 1.671694e-01   p_cons 6.265306e-04   p_joint 3.278912e-03

Joint ci ratio: 5.614336e-02	ci left: 3.190916e-03	ci right 3.375901e-03	k: 4858	n:1480000
Cons ci ratio: 1.287788e-01	ci left: 5.853781e-04	ci right 6.665967e-04	k: 925	n:1480000
KS ci ratio: 7.191159e-03	ci left: 1.666039e-01	ci right 1.678069e-01	k: 247463	n:1480000
SF3A1   1480000 perm   1241 sec   (1192 perm/sec)   p_kst 1.672047e-01   p_cons 6.250000e-04   p_joint 3.282432e-03

Joint ci ratio: 5.596515e-02	ci left: 3.190015e-03	ci right 3.374341e-03	k: 4889	n:1490000
Cons ci ratio: 1.282948e-01	ci left: 5.859964e-04	ci right 6.669718e-04	k: 932	n:1490000
KS ci ratio: 7.167144e-03	ci left: 1.665998e-01	ci right 1.677988e-01	k: 249126	n:1490000
SF3A1   1490000 perm   1255 sec   (1187 perm/sec)   p_kst 1.671987e-01   p_cons 6.255034e-04   p_joint 3.281208e-03

Joint ci ratio: 5.576021e-02	ci left: 3.192413e-03	ci right 3.376180e-03	k: 4925	n:1500000
Cons ci ratio: 1.280208e-01	ci left: 5.846709e-04	ci right 6.652775e-04	k: 936	n:1500000
KS ci ratio: 7.143641e-03	ci left: 1.665852e-01	ci right 1.677801e-01	k: 250773	n:1500000
SF3A1   1500000 perm   1270 sec   (1181 perm/sec)   p_kst 1.671820e-01   p_cons 6.240000e-04   p_joint 3.283333e-03

Joint ci ratio: 5.563068e-02	ci left: 3.186290e-03	ci right 3.369265e-03	k: 4948	n:1510000
Cons ci ratio: 1.278845e-01	ci left: 5.820809e-04	ci right 6.622386e-04	k: 938	n:1510000
KS ci ratio: 7.120638e-03	ci left: 1.665602e-01	ci right 1.677511e-01	k: 252404	n:1510000
SF3A1   1510000 perm   1285 sec   (1175 perm/sec)   p_kst 1.671550e-01   p_cons 6.211921e-04   p_joint 3.276821e-03

Joint ci ratio: 5.544054e-02	ci left: 3.187386e-03	ci right 3.369778e-03	k: 4982	n:1520000
Cons ci ratio: 1.272759e-01	ci left: 5.839836e-04	ci right 6.639917e-04	k: 947	n:1520000
KS ci ratio: 7.096415e-03	ci left: 1.665920e-01	ci right 1.677790e-01	k: 254121	n:1520000
SF3A1   1520000 perm   1300 sec   (1170 perm/sec)   p_kst 1.671849e-01   p_cons 6.230263e-04   p_joint 3.277632e-03

Joint ci ratio: 5.526339e-02	ci left: 3.187179e-03	ci right 3.368958e-03	k: 5014	n:1530000
Cons ci ratio: 1.270084e-01	ci left: 5.826979e-04	ci right 6.623494e-04	k: 951	n:1530000
KS ci ratio: 7.072204e-03	ci left: 1.666325e-01	ci right 1.678158e-01	k: 255852	n:1530000
SF3A1   1530000 perm   1314 sec   (1164 perm/sec)   p_kst 1.672235e-01   p_cons 6.215686e-04   p_joint 3.277124e-03

Joint ci ratio: 5.513728e-02	ci left: 3.181211e-03	ci right 3.362223e-03	k: 5037	n:1540000
Cons ci ratio: 1.267425e-01	ci left: 5.814291e-04	ci right 6.607282e-04	k: 955	n:1540000
KS ci ratio: 7.049209e-03	ci left: 1.666343e-01	ci right 1.678137e-01	k: 257524	n:1540000
SF3A1   1540000 perm   1330 sec   (1158 perm/sec)   p_kst 1.672234e-01   p_cons 6.201299e-04   p_joint 3.270779e-03

Joint ci ratio: 5.497389e-02	ci left: 3.179776e-03	ci right 3.360153e-03	k: 5067	n:1550000
Cons ci ratio: 1.264124e-01	ci left: 5.808016e-04	ci right 6.597934e-04	k: 960	n:1550000
KS ci ratio: 7.026583e-03	ci left: 1.666302e-01	ci right 1.678058e-01	k: 259187	n:1550000
SF3A1   1550000 perm   1344 sec   (1153 perm/sec)   p_kst 1.672174e-01   p_cons 6.193548e-04   p_joint 3.269032e-03

Joint ci ratio: 5.478500e-02	ci left: 3.181521e-03	ci right 3.361357e-03	k: 5102	n:1560000
Cons ci ratio: 1.262156e-01	ci left: 5.789408e-04	ci right 6.575478e-04	k: 963	n:1560000
KS ci ratio: 7.003851e-03	ci left: 1.666391e-01	ci right 1.678109e-01	k: 260870	n:1560000
SF3A1   1560000 perm   1359 sec   (1148 perm/sec)   p_kst 1.672244e-01   p_cons 6.173077e-04   p_joint 3.270513e-03

Joint ci ratio: 5.457141e-02	ci left: 3.186386e-03	ci right 3.365773e-03	k: 5142	n:1570000
Cons ci ratio: 1.256951e-01	ci left: 5.801883e-04	ci right 6.586156e-04	k: 971	n:1570000
KS ci ratio: 6.980461e-03	ci left: 1.666827e-01	ci right 1.678510e-01	k: 262608	n:1570000
SF3A1   1570000 perm   1375 sec   (1142 perm/sec)   p_kst 1.672662e-01   p_cons 6.184713e-04   p_joint 3.275159e-03

Joint ci ratio: 5.440771e-02	ci left: 3.185572e-03	ci right 3.364358e-03	k: 5173	n:1580000
Cons ci ratio: 1.251171e-01	ci left: 5.820337e-04	ci right 6.603219e-04	k: 980	n:1580000
KS ci ratio: 6.958663e-03	ci left: 1.666715e-01	ci right 1.678360e-01	k: 264260	n:1580000
SF3A1   1580000 perm   1390 sec   (1137 perm/sec)   p_kst 1.672532e-01   p_cons 6.202532e-04   p_joint 3.274051e-03

Joint ci ratio: 5.424548e-02	ci left: 3.184769e-03	ci right 3.362960e-03	k: 5204	n:1590000
Cons ci ratio: 1.243585e-01	ci left: 5.856849e-04	ci right 6.639514e-04	k: 992	n:1590000
KS ci ratio: 6.937302e-03	ci left: 1.666511e-01	ci right 1.678118e-01	k: 265897	n:1590000
SF3A1   1590000 perm   1405 sec   (1131 perm/sec)   p_kst 1.672308e-01   p_cons 6.238994e-04   p_joint 3.272956e-03

Joint ci ratio: 5.405880e-02	ci left: 3.187059e-03	ci right 3.364746e-03	k: 5240	n:1600000
Cons ci ratio: 1.242962e-01	ci left: 5.826299e-04	ci right 6.604462e-04	k: 993	n:1600000
KS ci ratio: 6.915966e-03	ci left: 1.666377e-01	ci right 1.677948e-01	k: 267545	n:1600000
SF3A1   1600000 perm   1421 sec   (1126 perm/sec)   p_kst 1.672156e-01   p_cons 6.206250e-04   p_joint 3.275000e-03

Joint ci ratio: 5.390479e-02	ci left: 3.185646e-03	ci right 3.362732e-03	k: 5270	n:1610000
Cons ci ratio: 1.240469e-01	ci left: 5.814183e-04	ci right 6.589056e-04	k: 997	n:1610000
KS ci ratio: 6.894427e-03	ci left: 1.666406e-01	ci right 1.677941e-01	k: 269219	n:1610000
SF3A1   1610000 perm   1436 sec   (1121 perm/sec)   p_kst 1.672168e-01   p_cons 6.192547e-04   p_joint 3.273292e-03

Joint ci ratio: 5.371651e-02	ci left: 3.188514e-03	ci right 3.365121e-03	k: 5307	n:1620000
Cons ci ratio: 1.231248e-01	ci left: 5.868024e-04	ci right 6.643836e-04	k: 1012	n:1620000
KS ci ratio: 6.872356e-03	ci left: 1.666731e-01	ci right 1.678231e-01	k: 270941	n:1620000
SF3A1   1620000 perm   1452 sec   (1116 perm/sec)   p_kst 1.672475e-01   p_cons 6.246914e-04   p_joint 3.275926e-03

Joint ci ratio: 5.356037e-02	ci left: 3.187716e-03	ci right 3.363750e-03	k: 5338	n:1630000
Cons ci ratio: 1.227617e-01	ci left: 5.867702e-04	ci right 6.641017e-04	k: 1018	n:1630000
KS ci ratio: 6.850767e-03	ci left: 1.666942e-01	ci right 1.678407e-01	k: 272645	n:1630000
SF3A1   1630000 perm   1468 sec   (1111 perm/sec)   p_kst 1.672669e-01   p_cons 6.245399e-04   p_joint 3.274847e-03

Joint ci ratio: 6.882058e-02	ci left: 1.906429e-03	ci right 2.042900e-03	k: 3237	n:1640000
Cons ci ratio: 1.223422e-01	ci left: 5.873298e-04	ci right 6.644514e-04	k: 1025	n:1640000
KS ci ratio: 6.829455e-03	ci left: 1.667120e-01	ci right 1.678550e-01	k: 274344	n:1640000
SF3A1   1640000 perm   1484 sec   (1105 perm/sec)   p_kst 1.672829e-01   p_cons 6.250000e-04   p_joint 1.973780e-03

Joint ci ratio: 6.860902e-02	ci left: 1.906788e-03	ci right 2.042849e-03	k: 3257	n:1650000
Cons ci ratio: 1.220452e-01	ci left: 5.867079e-04	ci right 6.635473e-04	k: 1030	n:1650000
KS ci ratio: 6.809437e-03	ci left: 1.666848e-01	ci right 1.678243e-01	k: 275969	n:1650000
SF3A1   1650000 perm   1501 sec   (1100 perm/sec)   p_kst 1.672539e-01   p_cons 6.242424e-04   p_joint 1.973939e-03

Joint ci ratio: 6.847268e-02	ci left: 1.902998e-03	ci right 2.038508e-03	k: 3270	n:1660000
Cons ci ratio: 1.219272e-01	ci left: 5.843415e-04	ci right 6.607917e-04	k: 1032	n:1660000
KS ci ratio: 6.788507e-03	ci left: 1.667024e-01	ci right 1.678385e-01	k: 277668	n:1660000
SF3A1   1660000 perm   1516 sec   (1095 perm/sec)   p_kst 1.672699e-01   p_cons 6.216867e-04   p_joint 1.969880e-03

Joint ci ratio: 5.030187e-02	ci left: 3.532195e-03	ci right 3.715042e-03	k: 6050	n:1670000
Cons ci ratio: 1.214577e-01	ci left: 5.854871e-04	ci right 6.617710e-04	k: 1040	n:1670000
KS ci ratio: 6.767958e-03	ci left: 1.667121e-01	ci right 1.678448e-01	k: 279354	n:1670000
SF3A1   1670000 perm   1533 sec   (1090 perm/sec)   p_kst 1.672778e-01   p_cons 6.227545e-04   p_joint 3.622754e-03

Joint ci ratio: 5.019430e-02	ci left: 3.526452e-03	ci right 3.708599e-03	k: 6076	n:1680000
Cons ci ratio: 1.211671e-01	ci left: 5.848879e-04	ci right 6.608983e-04	k: 1045	n:1680000
KS ci ratio: 6.747335e-03	ci left: 1.667323e-01	ci right 1.678617e-01	k: 281058	n:1680000
SF3A1   1680000 perm   1549 sec   (1085 perm/sec)   p_kst 1.672964e-01   p_cons 6.220238e-04   p_joint 3.616667e-03

Joint ci ratio: 5.005040e-02	ci left: 3.526036e-03	ci right 3.707625e-03	k: 6111	n:1690000
Cons ci ratio: 1.205919e-01	ci left: 5.871653e-04	ci right 6.630836e-04	k: 1055	n:1690000
KS ci ratio: 6.727800e-03	ci left: 1.667151e-01	ci right 1.678411e-01	k: 282699	n:1690000
SF3A1   1690000 perm   1565 sec   (1080 perm/sec)   p_kst 1.672775e-01   p_cons 6.242604e-04   p_joint 3.615976e-03

Joint ci ratio: 5.002219e-02	ci left: 3.509360e-03	ci right 3.689985e-03	k: 6118	n:1700000
Cons ci ratio: 1.201942e-01	ci left: 5.877051e-04	ci right 6.634247e-04	k: 1062	n:1700000
KS ci ratio: 6.706762e-03	ci left: 1.667674e-01	ci right 1.678902e-01	k: 284458	n:1700000
SF3A1   1700000 perm   1582 sec   (1074 perm/sec)   p_kst 1.673282e-01   p_cons 6.247059e-04   p_joint 3.598824e-03

Joint ci ratio: 4.992863e-02	ci left: 3.502119e-03	ci right 3.682025e-03	k: 6141	n:1710000
Cons ci ratio: 1.199688e-01	ci left: 5.865371e-04	ci right 6.619545e-04	k: 1066	n:1710000
KS ci ratio: 6.687689e-03	ci left: 1.667455e-01	ci right 1.678650e-01	k: 286091	n:1710000
SF3A1   1710000 perm   1599 sec   (1070 perm/sec)   p_kst 1.673047e-01   p_cons 6.233918e-04   p_joint 3.591228e-03

Joint ci ratio: 4.976678e-02	ci left: 3.504724e-03	ci right 3.684163e-03	k: 6181	n:1720000
Cons ci ratio: 1.196887e-01	ci left: 5.859468e-04	ci right 6.611000e-04	k: 1071	n:1720000
KS ci ratio: 6.668359e-03	ci left: 1.667413e-01	ci right 1.678575e-01	k: 287754	n:1720000
SF3A1   1720000 perm   1615 sec   (1065 perm/sec)   p_kst 1.672988e-01   p_cons 6.226744e-04   p_joint 3.593605e-03

Joint ci ratio: 4.962651e-02	ci left: 3.504445e-03	ci right 3.683350e-03	k: 6216	n:1730000
Cons ci ratio: 1.194661e-01	ci left: 5.848028e-04	ci right 6.596599e-04	k: 1075	n:1730000
KS ci ratio: 6.649045e-03	ci left: 1.667435e-01	ci right 1.678564e-01	k: 289428	n:1730000
SF3A1   1730000 perm   1631 sec   (1060 perm/sec)   p_kst 1.672994e-01   p_cons 6.213873e-04   p_joint 3.593064e-03

Joint ci ratio: 4.949139e-02	ci left: 3.503603e-03	ci right 3.681964e-03	k: 6250	n:1740000
Cons ci ratio: 1.190794e-01	ci left: 5.853448e-04	ci right 6.600117e-04	k: 1082	n:1740000
KS ci ratio: 6.629788e-03	ci left: 1.667503e-01	ci right 1.678600e-01	k: 291110	n:1740000
SF3A1   1740000 perm   1648 sec   (1056 perm/sec)   p_kst 1.673046e-01   p_cons 6.218391e-04   p_joint 3.591954e-03

Joint ci ratio: 4.934555e-02	ci left: 3.504464e-03	ci right 3.682328e-03	k: 6287	n:1750000
Cons ci ratio: 1.188055e-01	ci left: 5.847721e-04	ci right 6.591823e-04	k: 1087	n:1750000
KS ci ratio: 6.610344e-03	ci left: 1.667718e-01	ci right 1.678784e-01	k: 292818	n:1750000
SF3A1   1750000 perm   1665 sec   (1051 perm/sec)   p_kst 1.673246e-01   p_cons 6.211429e-04   p_joint 3.592571e-03

Joint ci ratio: 4.917759e-02	ci left: 3.508683e-03	ci right 3.686138e-03	k: 6330	n:1760000
Cons ci ratio: 1.184792e-01	ci left: 5.847575e-04	ci right 6.589472e-04	k: 1093	n:1760000
KS ci ratio: 6.591555e-03	ci left: 1.667727e-01	ci right 1.678761e-01	k: 294490	n:1760000
SF3A1   1760000 perm   1682 sec   (1046 perm/sec)   p_kst 1.673239e-01   p_cons 6.210227e-04   p_joint 3.596591e-03

Joint ci ratio: 4.899976e-02	ci left: 3.514530e-03	ci right 3.691620e-03	k: 6376	n:1770000
Cons ci ratio: 1.181557e-01	ci left: 5.847433e-04	ci right 6.587144e-04	k: 1099	n:1770000
KS ci ratio: 6.573072e-03	ci left: 1.667673e-01	ci right 1.678677e-01	k: 296151	n:1770000
SF3A1   1770000 perm   1699 sec   (1042 perm/sec)   p_kst 1.673169e-01   p_cons 6.209040e-04   p_joint 3.602260e-03

Joint ci ratio: 4.884293e-02	ci left: 3.517538e-03	ci right 3.694196e-03	k: 6417	n:1780000
Cons ci ratio: 1.176752e-01	ci left: 5.863653e-04	ci right 6.602190e-04	k: 1108	n:1780000
KS ci ratio: 6.553990e-03	ci left: 1.667940e-01	ci right 1.678913e-01	k: 297869	n:1780000
SF3A1   1780000 perm   1716 sec   (1037 perm/sec)   p_kst 1.673421e-01   p_cons 6.224719e-04   p_joint 3.605056e-03

Joint ci ratio: 4.868381e-02	ci left: 3.521064e-03	ci right 3.697307e-03	k: 6459	n:1790000
Cons ci ratio: 1.172530e-01	ci left: 5.874275e-04	ci right 6.611311e-04	k: 1116	n:1790000
KS ci ratio: 6.535387e-03	ci left: 1.668070e-01	ci right 1.679013e-01	k: 299563	n:1790000
SF3A1   1790000 perm   1734 sec   (1033 perm/sec)   p_kst 1.673536e-01   p_cons 6.234637e-04   p_joint 3.608380e-03

Joint ci ratio: 4.851501e-02	ci left: 3.526199e-03	ci right 3.702070e-03	k: 6504	n:1800000
Cons ci ratio: 1.169393e-01	ci left: 5.873997e-04	ci right 6.608891e-04	k: 1122	n:1800000
KS ci ratio: 6.517813e-03	ci left: 1.667827e-01	ci right 1.678739e-01	k: 301190	n:1800000
SF3A1   1800000 perm   1750 sec   (1028 perm/sec)   p_kst 1.673278e-01   p_cons 6.233333e-04   p_joint 3.613333e-03

Joint ci ratio: 5.171257e-02	ci left: 3.082791e-03	ci right 3.246982e-03	k: 5727	n:1810000
Cons ci ratio: 1.163706e-01	ci left: 5.900545e-04	ci right 6.634923e-04	k: 1133	n:1810000
KS ci ratio: 6.500032e-03	ci left: 1.667736e-01	ci right 1.678617e-01	k: 302844	n:1810000
SF3A1   1810000 perm   1768 sec   (1024 perm/sec)   p_kst 1.673171e-01   p_cons 6.259669e-04   p_joint 3.164088e-03

Joint ci ratio: 4.823401e-02	ci left: 3.528703e-03	ci right 3.703651e-03	k: 6580	n:1820000
Cons ci ratio: 1.161660e-01	ci left: 5.889463e-04	ci right 6.621085e-04	k: 1137	n:1820000
KS ci ratio: 6.482651e-03	ci left: 1.667536e-01	ci right 1.678387e-01	k: 304478	n:1820000
SF3A1   1820000 perm   1785 sec   (1020 perm/sec)   p_kst 1.672956e-01   p_cons 6.247253e-04   p_joint 3.615385e-03

Joint ci ratio: 4.815378e-02	ci left: 3.521297e-03	ci right 3.695580e-03	k: 6602	n:1830000
Cons ci ratio: 1.159117e-01	ci left: 5.883809e-04	ci right 6.613019e-04	k: 1142	n:1830000
KS ci ratio: 6.465332e-03	ci left: 1.667371e-01	ci right 1.678191e-01	k: 306118	n:1830000
SF3A1   1830000 perm   1802 sec   (1015 perm/sec)   p_kst 1.672776e-01   p_cons 6.240437e-04   p_joint 3.607650e-03

Joint ci ratio: 5.130226e-02	ci left: 3.081884e-03	ci right 3.244686e-03	k: 5819	n:1840000
Cons ci ratio: 1.156086e-01	ci left: 5.883496e-04	ci right 6.610631e-04	k: 1148	n:1840000
KS ci ratio: 6.448026e-03	ci left: 1.667262e-01	ci right 1.678053e-01	k: 307768	n:1840000
SF3A1   1840000 perm   1820 sec   (1011 perm/sec)   p_kst 1.672652e-01   p_cons 6.239130e-04   p_joint 3.162500e-03

Joint ci ratio: 5.120571e-02	ci left: 3.076964e-03	ci right 3.239192e-03	k: 5841	n:1850000
Cons ci ratio: 1.154581e-01	ci left: 5.867441e-04	ci right 6.591583e-04	k: 1151	n:1850000
KS ci ratio: 6.430608e-03	ci left: 1.667262e-01	ci right 1.678024e-01	k: 309438	n:1850000
SF3A1   1850000 perm   1837 sec   (1007 perm/sec)   p_kst 1.672638e-01   p_cons 6.221622e-04   p_joint 3.157297e-03

Joint ci ratio: 5.107476e-02	ci left: 3.076344e-03	ci right 3.238112e-03	k: 5871	n:1860000
Cons ci ratio: 1.152583e-01	ci left: 5.856780e-04	ci right 6.578270e-04	k: 1155	n:1860000
KS ci ratio: 6.413294e-03	ci left: 1.667279e-01	ci right 1.678011e-01	k: 311111	n:1860000
SF3A1   1860000 perm   1855 sec   (1003 perm/sec)   p_kst 1.672640e-01   p_cons 6.209677e-04   p_joint 3.156452e-03

Joint ci ratio: 5.095347e-02	ci left: 3.074675e-03	ci right 3.235960e-03	k: 5899	n:1870000
Cons ci ratio: 1.149108e-01	ci left: 5.861816e-04	ci right 6.581602e-04	k: 1162	n:1870000
KS ci ratio: 6.395886e-03	ci left: 1.667397e-01	ci right 1.678100e-01	k: 312803	n:1870000
SF3A1   1870000 perm   1873 sec   (999 perm/sec)   p_kst 1.672743e-01   p_cons 6.213904e-04   p_joint 3.154545e-03

Joint ci ratio: 4.517085e-02	ci left: 3.899755e-03	ci right 4.080502e-03	k: 7500	n:1880000
Cons ci ratio: 1.144199e-01	ci left: 5.882303e-04	ci right 6.601310e-04	k: 1172	n:1880000
KS ci ratio: 6.378655e-03	ci left: 1.667497e-01	ci right 1.678173e-01	k: 314492	n:1880000
SF3A1   1880000 perm   1890 sec   (995 perm/sec)   p_kst 1.672830e-01   p_cons 6.234043e-04   p_joint 3.989362e-03

Joint ci ratio: 4.503590e-02	ci left: 3.902662e-03	ci right 4.082990e-03	k: 7545	n:1890000
Cons ci ratio: 1.141284e-01	ci left: 5.882018e-04	ci right 6.599035e-04	k: 1178	n:1890000
KS ci ratio: 6.362058e-03	ci left: 1.667380e-01	ci right 1.678027e-01	k: 316140	n:1890000
SF3A1   1890000 perm   1908 sec   (991 perm/sec)   p_kst 1.672698e-01   p_cons 6.232804e-04   p_joint 3.992063e-03

Joint ci ratio: 4.491106e-02	ci left: 3.903979e-03	ci right 4.083854e-03	k: 7587	n:1900000
Cons ci ratio: 1.136951e-01	ci left: 5.897079e-04	ci right 6.613021e-04	k: 1187	n:1900000
KS ci ratio: 6.345074e-03	ci left: 1.667490e-01	ci right 1.678109e-01	k: 317831	n:1900000
SF3A1   1900000 perm   1926 sec   (987 perm/sec)   p_kst 1.672795e-01   p_cons 6.247368e-04   p_joint 3.993158e-03

Joint ci ratio: 4.480790e-02	ci left: 3.901658e-03	ci right 4.081003e-03	k: 7622	n:1910000
Cons ci ratio: 1.136475e-01	ci left: 5.871291e-04	ci right 6.583783e-04	k: 1188	n:1910000
KS ci ratio: 6.328880e-03	ci left: 1.667312e-01	ci right 1.677903e-01	k: 319467	n:1910000
SF3A1   1910000 perm   1944 sec   (983 perm/sec)   p_kst 1.672602e-01   p_cons 6.219895e-04   p_joint 3.990576e-03

Joint ci ratio: 4.468495e-02	ci left: 3.902967e-03	ci right 4.081867e-03	k: 7664	n:1920000
Cons ci ratio: 1.133618e-01	ci left: 5.871074e-04	ci right 6.581629e-04	k: 1194	n:1920000
KS ci ratio: 6.312407e-03	ci left: 1.667312e-01	ci right 1.677875e-01	k: 321137	n:1920000
SF3A1   1920000 perm   1962 sec   (978 perm/sec)   p_kst 1.672589e-01   p_cons 6.218750e-04   p_joint 3.991667e-03

Joint ci ratio: 5.018954e-02	ci left: 3.071686e-03	ci right 3.230329e-03	k: 6080	n:1930000
Cons ci ratio: 1.132199e-01	ci left: 5.855757e-04	ci right 6.563512e-04	k: 1197	n:1930000
KS ci ratio: 6.296344e-03	ci left: 1.667188e-01	ci right 1.677723e-01	k: 322783	n:1930000
SF3A1   1930000 perm   1981 sec   (974 perm/sec)   p_kst 1.672451e-01   p_cons 6.202073e-04   p_joint 3.150259e-03

Joint ci ratio: 5.002107e-02	ci left: 3.076722e-03	ci right 3.235076e-03	k: 6121	n:1940000
Cons ci ratio: 1.127502e-01	ci left: 5.875663e-04	ci right 6.582681e-04	k: 1207	n:1940000
KS ci ratio: 6.279485e-03	ci left: 1.667472e-01	ci right 1.677981e-01	k: 324508	n:1940000
SF3A1   1940000 perm   1999 sec   (970 perm/sec)   p_kst 1.672722e-01   p_cons 6.221649e-04   p_joint 3.155155e-03

Joint ci ratio: 4.992748e-02	ci left: 3.072591e-03	ci right 3.230428e-03	k: 6144	n:1950000
Cons ci ratio: 1.122402e-01	ci left: 5.900355e-04	ci right 6.606920e-04	k: 1218	n:1950000
KS ci ratio: 6.263302e-03	ci left: 1.667513e-01	ci right 1.677995e-01	k: 326186	n:1950000
SF3A1   1950000 perm   2017 sec   (967 perm/sec)   p_kst 1.672749e-01   p_cons 6.246154e-04   p_joint 3.150769e-03

Joint ci ratio: 4.613843e-02	ci left: 3.584714e-03	ci right 3.754513e-03	k: 7191	n:1960000
Cons ci ratio: 1.118736e-01	ci left: 5.909923e-04	ci right 6.615171e-04	k: 1226	n:1960000
KS ci ratio: 6.247473e-03	ci left: 1.667451e-01	ci right 1.677906e-01	k: 327844	n:1960000
SF3A1   1960000 perm   2036 sec   (963 perm/sec)   p_kst 1.672673e-01   p_cons 6.255102e-04   p_joint 3.668878e-03

Joint ci ratio: 4.645434e-02	ci left: 3.517846e-03	ci right 3.685649e-03	k: 7094	n:1970000
Cons ci ratio: 1.116011e-01	ci left: 5.909529e-04	ci right 6.612899e-04	k: 1232	n:1970000
KS ci ratio: 6.232603e-03	ci left: 1.667015e-01	ci right 1.677442e-01	k: 329428	n:1970000
SF3A1   1970000 perm   2054 sec   (959 perm/sec)   p_kst 1.672223e-01   p_cons 6.253807e-04   p_joint 3.601015e-03

Joint ci ratio: 4.635324e-02	ci left: 3.515554e-03	ci right 3.682873e-03	k: 7125	n:1980000
Cons ci ratio: 1.115560e-01	ci left: 5.884592e-04	ci right 6.584693e-04	k: 1233	n:1980000
KS ci ratio: 6.217118e-03	ci left: 1.666906e-01	ci right 1.677306e-01	k: 331076	n:1980000
SF3A1   1980000 perm   2073 sec   (955 perm/sec)   p_kst 1.672101e-01   p_cons 6.227273e-04   p_joint 3.598485e-03

Joint ci ratio: 4.627228e-02	ci left: 3.510305e-03	ci right 3.677074e-03	k: 7150	n:1990000
Cons ci ratio: 1.114208e-01	ci left: 5.869676e-04	ci right 6.567100e-04	k: 1236	n:1990000
KS ci ratio: 6.202027e-03	ci left: 1.666672e-01	ci right 1.677046e-01	k: 332699	n:1990000
SF3A1   1990000 perm   2091 sec   (952 perm/sec)   p_kst 1.671854e-01   p_cons 6.211055e-04   p_joint 3.592965e-03

Joint ci ratio: 4.615302e-02	ci left: 3.511040e-03	ci right 3.677403e-03	k: 7187	n:2000000
Cons ci ratio: 1.109730e-01	ci left: 5.888938e-04	ci right 6.585654e-04	k: 1246	n:2000000
KS ci ratio: 6.186634e-03	ci left: 1.666626e-01	ci right 1.676974e-01	k: 334359	n:2000000
SF3A1   2000000 perm   2110 sec   (948 perm/sec)   p_kst 1.671795e-01   p_cons 6.230000e-04   p_joint 3.593500e-03

Joint ci ratio: 4.605067e-02	ci left: 3.509309e-03	ci right 3.675211e-03	k: 7219	n:2010000
Cons ci ratio: 1.106187e-01	ci left: 5.898338e-04	ci right 6.593793e-04	k: 1254	n:2010000
KS ci ratio: 6.170583e-03	ci left: 1.666928e-01	ci right 1.677251e-01	k: 336089	n:2010000
SF3A1   2010000 perm   2129 sec   (944 perm/sec)   p_kst 1.672085e-01   p_cons 6.238806e-04   p_joint 3.591542e-03

Joint ci ratio: 4.590138e-02	ci left: 3.514936e-03	ci right 3.680552e-03	k: 7266	n:2020000
Cons ci ratio: 1.102677e-01	ci left: 5.907648e-04	ci right 6.601848e-04	k: 1262	n:2020000
KS ci ratio: 6.155554e-03	ci left: 1.666822e-01	ci right 1.677118e-01	k: 337737	n:2020000
SF3A1   2020000 perm   2148 sec   (940 perm/sec)   p_kst 1.671965e-01   p_cons 6.247525e-04   p_joint 3.597030e-03

Joint ci ratio: 4.579126e-02	ci left: 3.514665e-03	ci right 3.679860e-03	k: 7301	n:2030000
Cons ci ratio: 1.100936e-01	ci left: 5.897708e-04	ci right 6.589574e-04	k: 1266	n:2030000
KS ci ratio: 6.139918e-03	ci left: 1.667041e-01	ci right 1.677313e-01	k: 339451	n:2030000
SF3A1   2030000 perm   2167 sec   (937 perm/sec)   p_kst 1.672172e-01   p_cons 6.236453e-04   p_joint 3.596552e-03

Joint ci ratio: 4.567879e-02	ci left: 3.514881e-03	ci right 3.679670e-03	k: 7337	n:2040000
Cons ci ratio: 1.097907e-01	ci left: 5.902168e-04	ci right 6.592529e-04	k: 1273	n:2040000
KS ci ratio: 6.125165e-03	ci left: 1.666911e-01	ci right 1.677157e-01	k: 341094	n:2040000
SF3A1   2040000 perm   2187 sec   (933 perm/sec)   p_kst 1.672029e-01   p_cons 6.240196e-04   p_joint 3.596569e-03

Joint ci ratio: 4.556715e-02	ci left: 3.515096e-03	ci right 3.679482e-03	k: 7373	n:2050000
Cons ci ratio: 1.096618e-01	ci left: 5.887609e-04	ci right 6.575406e-04	k: 1276	n:2050000
KS ci ratio: 6.110989e-03	ci left: 1.666568e-01	ci right 1.676788e-01	k: 342693	n:2050000
SF3A1   2050000 perm   2206 sec   (929 perm/sec)   p_kst 1.671673e-01   p_cons 6.224390e-04   p_joint 3.596585e-03

Joint ci ratio: 4.547173e-02	ci left: 3.512910e-03	ci right 3.676840e-03	k: 7404	n:2060000
Cons ci ratio: 1.094905e-01	ci left: 5.877913e-04	ci right 6.563436e-04	k: 1280	n:2060000
KS ci ratio: 6.095721e-03	ci left: 1.666771e-01	ci right 1.676967e-01	k: 344404	n:2060000
SF3A1   2060000 perm   2225 sec   (926 perm/sec)   p_kst 1.671864e-01   p_cons 6.213592e-04   p_joint 3.594175e-03

Joint ci ratio: 4.537690e-02	ci left: 3.510745e-03	ci right 3.674224e-03	k: 7435	n:2070000
Cons ci ratio: 1.092350e-01	ci left: 5.877710e-04	ci right 6.561507e-04	k: 1286	n:2070000
KS ci ratio: 6.080292e-03	ci left: 1.667097e-01	ci right 1.677269e-01	k: 346141	n:2070000
SF3A1   2070000 perm   2244 sec   (922 perm/sec)   p_kst 1.672179e-01   p_cons 6.212560e-04   p_joint 3.591787e-03

Joint ci ratio: 4.528266e-02	ci left: 3.508601e-03	ci right 3.671632e-03	k: 7466	n:2080000
Cons ci ratio: 1.089812e-01	ci left: 5.877511e-04	ci right 6.559594e-04	k: 1292	n:2080000
KS ci ratio: 6.066163e-03	ci left: 1.666878e-01	ci right 1.677025e-01	k: 347765	n:2080000
SF3A1   2080000 perm   2264 sec   (919 perm/sec)   p_kst 1.671947e-01   p_cons 6.211538e-04   p_joint 3.589423e-03

Joint ci ratio: 4.517692e-02	ci left: 3.508371e-03	ci right 3.671000e-03	k: 7501	n:2090000
Cons ci ratio: 1.088131e-01	ci left: 5.868006e-04	ci right 6.547868e-04	k: 1296	n:2090000
KS ci ratio: 6.051664e-03	ci left: 1.666876e-01	ci right 1.676999e-01	k: 349434	n:2090000
SF3A1   2090000 perm   2284 sec   (915 perm/sec)   p_kst 1.671933e-01   p_cons 6.200957e-04   p_joint 3.588995e-03

Joint ci ratio: 4.508091e-02	ci left: 3.506730e-03	ci right 3.668929e-03	k: 7533	n:2100000
Cons ci ratio: 1.085206e-01	ci left: 5.872491e-04	ci right 6.550927e-04	k: 1303	n:2100000
KS ci ratio: 6.037093e-03	ci left: 1.666955e-01	ci right 1.677054e-01	k: 351120	n:2100000
SF3A1   2100000 perm   2303 sec   (912 perm/sec)   p_kst 1.672000e-01   p_cons 6.204762e-04   p_joint 3.587143e-03

Joint ci ratio: 4.497956e-02	ci left: 3.506043e-03	ci right 3.667836e-03	k: 7567	n:2110000
Cons ci ratio: 1.081892e-01	ci left: 5.881546e-04	ci right 6.558822e-04	k: 1311	n:2110000
KS ci ratio: 6.022616e-03	ci left: 1.667038e-01	ci right 1.677113e-01	k: 352807	n:2110000
SF3A1   2110000 perm   2324 sec   (908 perm/sec)   p_kst 1.672071e-01   p_cons 6.213270e-04   p_joint 3.586256e-03

Joint ci ratio: 4.487888e-02	ci left: 3.505363e-03	ci right 3.666753e-03	k: 7601	n:2120000
Cons ci ratio: 1.079427e-01	ci left: 5.881340e-04	ci right 6.556950e-04	k: 1317	n:2120000
KS ci ratio: 6.007683e-03	ci left: 1.667380e-01	ci right 1.677431e-01	k: 354549	n:2120000
SF3A1   2120000 perm   2344 sec   (904 perm/sec)   p_kst 1.672401e-01   p_cons 6.212264e-04   p_joint 3.585377e-03

Joint ci ratio: 4.478770e-02	ci left: 3.503296e-03	ci right 3.664255e-03	k: 7632	n:2130000
Cons ci ratio: 1.076572e-01	ci left: 5.885706e-04	ci right 6.559916e-04	k: 1324	n:2130000
KS ci ratio: 5.993538e-03	ci left: 1.667404e-01	ci right 1.677432e-01	k: 356224	n:2130000
SF3A1   2130000 perm   2364 sec   (901 perm/sec)   p_kst 1.672413e-01   p_cons 6.215962e-04   p_joint 3.583099e-03

Joint ci ratio: 4.780107e-02	ci left: 3.057816e-03	ci right 3.208020e-03	k: 6703	n:2140000
Cons ci ratio: 1.072531e-01	ci left: 5.903676e-04	ci right 6.577246e-04	k: 1334	n:2140000
KS ci ratio: 5.979593e-03	ci left: 1.667381e-01	ci right 1.677385e-01	k: 357889	n:2140000
SF3A1   2140000 perm   2384 sec   (898 perm/sec)   p_kst 1.672379e-01   p_cons 6.233645e-04   p_joint 3.132243e-03

Joint ci ratio: 4.769094e-02	ci left: 3.057840e-03	ci right 3.207689e-03	k: 6734	n:2150000
Cons ci ratio: 1.071730e-01	ci left: 5.885270e-04	ci right 6.556206e-04	k: 1336	n:2150000
KS ci ratio: 5.965266e-03	ci left: 1.667581e-01	ci right 1.677563e-01	k: 359602	n:2150000
SF3A1   2150000 perm   2404 sec   (894 perm/sec)   p_kst 1.672567e-01   p_cons 6.213953e-04   p_joint 3.132093e-03

Joint ci ratio: 4.757804e-02	ci left: 3.058322e-03	ci right 3.207830e-03	k: 6766	n:2160000
Cons ci ratio: 1.070130e-01	ci left: 5.876046e-04	ci right 6.544868e-04	k: 1340	n:2160000
KS ci ratio: 5.952060e-03	ci left: 1.667303e-01	ci right 1.677261e-01	k: 361212	n:2160000
SF3A1   2160000 perm   2424 sec   (891 perm/sec)   p_kst 1.672278e-01   p_cons 6.203704e-04   p_joint 3.132407e-03

Joint ci ratio: 4.745893e-02	ci left: 3.059710e-03	ci right 3.208902e-03	k: 6800	n:2170000
Cons ci ratio: 1.068141e-01	ci left: 5.871392e-04	ci right 6.538365e-04	k: 1345	n:2170000
KS ci ratio: 5.938107e-03	ci left: 1.667419e-01	ci right 1.677355e-01	k: 362907	n:2170000
SF3A1   2170000 perm   2445 sec   (888 perm/sec)   p_kst 1.672382e-01   p_cons 6.198157e-04   p_joint 3.133641e-03

Joint ci ratio: 4.718515e-02	ci left: 3.081485e-03	ci right 3.230849e-03	k: 6879	n:2180000
Cons ci ratio: 1.065374e-01	ci left: 5.875713e-04	ci right 6.541339e-04	k: 1352	n:2180000
KS ci ratio: 5.924895e-03	ci left: 1.667232e-01	ci right 1.677144e-01	k: 364536	n:2180000
SF3A1   2180000 perm   2466 sec   (884 perm/sec)   p_kst 1.672183e-01   p_cons 6.201835e-04   p_joint 3.155505e-03

Joint ci ratio: 4.707580e-02	ci left: 3.081854e-03	ci right 3.230880e-03	k: 6911	n:2190000
Cons ci ratio: 1.062629e-01	ci left: 5.879996e-04	ci right 6.544283e-04	k: 1359	n:2190000
KS ci ratio: 5.911451e-03	ci left: 1.667197e-01	ci right 1.677086e-01	k: 366198	n:2190000
SF3A1   2190000 perm   2487 sec   (881 perm/sec)   p_kst 1.672137e-01   p_cons 6.205479e-04   p_joint 3.155708e-03

Joint ci ratio: 4.165617e-02	ci left: 3.925567e-03	ci right 4.093015e-03	k: 8819	n:2200000
Cons ci ratio: 1.060681e-01	ci left: 5.875392e-04	ci right 6.537867e-04	k: 1364	n:2200000
KS ci ratio: 5.898243e-03	ci left: 1.667094e-01	ci right 1.676960e-01	k: 367845	n:2200000
SF3A1   2200000 perm   2508 sec   (877 perm/sec)   p_kst 1.672023e-01   p_cons 6.200000e-04   p_joint 4.008636e-03

Joint ci ratio: 4.684251e-02	ci left: 3.084819e-03	ci right 3.233229e-03	k: 6980	n:2210000
Cons ci ratio: 1.058744e-01	ci left: 5.870832e-04	ci right 6.531508e-04	k: 1369	n:2210000
KS ci ratio: 5.884816e-03	ci left: 1.667137e-01	ci right 1.676981e-01	k: 369524	n:2210000
SF3A1   2210000 perm   2529 sec   (874 perm/sec)   p_kst 1.672054e-01   p_cons 6.194570e-04   p_joint 3.158371e-03

Joint ci ratio: 4.675558e-02	ci left: 3.082498e-03	ci right 3.230514e-03	k: 7006	n:2220000
Cons ci ratio: 1.057202e-01	ci left: 5.861928e-04	ci right 6.520582e-04	k: 1373	n:2220000
KS ci ratio: 5.871339e-03	ci left: 1.667246e-01	ci right 1.677069e-01	k: 371218	n:2220000
SF3A1   2220000 perm   2549 sec   (871 perm/sec)   p_kst 1.672153e-01   p_cons 6.184685e-04   p_joint 3.155856e-03

Joint ci ratio: 4.662261e-02	ci left: 3.086404e-03	ci right 3.234174e-03	k: 7046	n:2230000
Cons ci ratio: 1.054902e-01	ci left: 5.861836e-04	ci right 6.518958e-04	k: 1379	n:2230000
KS ci ratio: 5.857982e-03	ci left: 1.667342e-01	ci right 1.677142e-01	k: 372909	n:2230000
SF3A1   2230000 perm   2570 sec   (868 perm/sec)   p_kst 1.672238e-01   p_cons 6.183857e-04   p_joint 3.159641e-03

Joint ci ratio: 4.652040e-02	ci left: 3.086303e-03	ci right 3.233736e-03	k: 7077	n:2240000
Cons ci ratio: 1.052236e-01	ci left: 5.866094e-04	ci right 6.521928e-04	k: 1386	n:2240000
KS ci ratio: 5.845156e-03	ci left: 1.667227e-01	ci right 1.677005e-01	k: 374553	n:2240000
SF3A1   2240000 perm   2591 sec   (864 perm/sec)   p_kst 1.672112e-01   p_cons 6.187500e-04   p_joint 3.159375e-03

Joint ci ratio: 4.643525e-02	ci left: 3.084007e-03	ci right 3.231054e-03	k: 7103	n:2250000
Cons ci ratio: 1.049968e-01	ci left: 5.865988e-04	ci right 6.520309e-04	k: 1392	n:2250000
KS ci ratio: 5.831921e-03	ci left: 1.667348e-01	ci right 1.677105e-01	k: 376250	n:2250000
SF3A1   2250000 perm   2612 sec   (861 perm/sec)   p_kst 1.672222e-01   p_cons 6.186667e-04   p_joint 3.156889e-03

Joint ci ratio: 4.635383e-02	ci left: 3.081295e-03	ci right 3.227947e-03	k: 7128	n:2260000
Cons ci ratio: 1.048464e-01	ci left: 5.857267e-04	ci right 6.509622e-04	k: 1396	n:2260000
KS ci ratio: 5.818452e-03	ci left: 1.667623e-01	ci right 1.677359e-01	k: 377982	n:2260000
SF3A1   2260000 perm   2633 sec   (858 perm/sec)   p_kst 1.672487e-01   p_cons 6.176991e-04   p_joint 3.153982e-03

Joint ci ratio: 4.625662e-02	ci left: 3.080784e-03	ci right 3.227096e-03	k: 7158	n:2270000
Cons ci ratio: 1.045847e-01	ci left: 5.861493e-04	ci right 6.512589e-04	k: 1403	n:2270000
KS ci ratio: 5.806030e-03	ci left: 1.667438e-01	ci right 1.677152e-01	k: 379610	n:2270000
SF3A1   2270000 perm   2654 sec   (855 perm/sec)   p_kst 1.672291e-01   p_cons 6.180617e-04   p_joint 3.153304e-03

Joint ci ratio: 4.618258e-02	ci left: 3.077243e-03	ci right 3.223147e-03	k: 7181	n:2280000
Cons ci ratio: 1.043619e-01	ci left: 5.861413e-04	ci right 6.511029e-04	k: 1409	n:2280000
KS ci ratio: 5.793332e-03	ci left: 1.667426e-01	ci right 1.677118e-01	k: 381277	n:2280000
SF3A1   2280000 perm   2675 sec   (852 perm/sec)   p_kst 1.672268e-01   p_cons 6.179825e-04   p_joint 3.149561e-03

Joint ci ratio: 4.607042e-02	ci left: 3.078912e-03	ci right 3.224532e-03	k: 7216	n:2290000
Cons ci ratio: 1.041406e-01	ci left: 5.861335e-04	ci right 6.509480e-04	k: 1415	n:2290000
KS ci ratio: 5.780535e-03	ci left: 1.667500e-01	ci right 1.677172e-01	k: 382964	n:2290000
SF3A1   2290000 perm   2697 sec   (849 perm/sec)   p_kst 1.672332e-01   p_cons 6.179039e-04   p_joint 3.151092e-03

Joint ci ratio: 4.612848e-02	ci left: 3.057789e-03	ci right 3.202597e-03	k: 7198	n:2300000
Cons ci ratio: 1.040672e-01	ci left: 5.844320e-04	ci right 6.490100e-04	k: 1417	n:2300000
KS ci ratio: 5.768634e-03	ci left: 1.667184e-01	ci right 1.676833e-01	k: 384561	n:2300000
SF3A1   2300000 perm   2719 sec   (846 perm/sec)   p_kst 1.672004e-01   p_cons 6.160870e-04   p_joint 3.129565e-03

Joint ci ratio: 4.602629e-02	ci left: 3.058245e-03	ci right 3.202745e-03	k: 7230	n:2310000
Cons ci ratio: 1.039208e-01	ci left: 5.835886e-04	ci right 6.479771e-04	k: 1421	n:2310000
KS ci ratio: 5.756080e-03	ci left: 1.667220e-01	ci right 1.676849e-01	k: 386239	n:2310000
SF3A1   2310000 perm   2740 sec   (843 perm/sec)   p_kst 1.672030e-01   p_cons 6.151515e-04   p_joint 3.129870e-03

Joint ci ratio: 4.596288e-02	ci left: 3.053585e-03	ci right 3.197660e-03	k: 7250	n:2320000
Cons ci ratio: 1.038844e-01	ci left: 5.814929e-04	ci right 6.456263e-04	k: 1422	n:2320000
KS ci ratio: 5.744097e-03	ci left: 1.667020e-01	ci right 1.676627e-01	k: 387862	n:2320000
SF3A1   2320000 perm   2762 sec   (840 perm/sec)   p_kst 1.671819e-01   p_cons 6.129310e-04   p_joint 3.125000e-03

Joint ci ratio: 4.589024e-02	ci left: 3.050237e-03	ci right 3.193921e-03	k: 7273	n:2330000
Cons ci ratio: 1.037387e-01	ci left: 5.806694e-04	ci right 6.446167e-04	k: 1426	n:2330000
KS ci ratio: 5.732216e-03	ci left: 1.666808e-01	ci right 1.676394e-01	k: 389482	n:2330000
SF3A1   2330000 perm   2783 sec   (837 perm/sec)   p_kst 1.671597e-01   p_cons 6.120172e-04   p_joint 3.121459e-03

Joint ci ratio: 4.578020e-02	ci left: 3.051988e-03	ci right 3.195400e-03	k: 7308	n:2340000
Cons ci ratio: 1.035213e-01	ci left: 5.806855e-04	ci right 6.444925e-04	k: 1432	n:2340000
KS ci ratio: 5.720337e-03	ci left: 1.666632e-01	ci right 1.676197e-01	k: 391110	n:2340000
SF3A1   2340000 perm   2805 sec   (834 perm/sec)   p_kst 1.671410e-01   p_cons 6.119658e-04   p_joint 3.123077e-03

Joint ci ratio: 4.565224e-02	ci left: 3.056248e-03	ci right 3.199449e-03	k: 7349	n:2350000
Cons ci ratio: 1.034132e-01	ci left: 5.794581e-04	ci right 6.430596e-04	k: 1435	n:2350000
KS ci ratio: 5.708043e-03	ci left: 1.666695e-01	ci right 1.676240e-01	k: 392794	n:2350000
SF3A1   2350000 perm   2826 sec   (831 perm/sec)   p_kst 1.671464e-01   p_cons 6.106383e-04   p_joint 3.127234e-03

Joint ci ratio: 4.551299e-02	ci left: 3.062148e-03	ci right 3.205177e-03	k: 7394	n:2360000
Cons ci ratio: 1.030906e-01	ci left: 5.807178e-04	ci right 6.442468e-04	k: 1444	n:2360000
KS ci ratio: 5.695404e-03	ci left: 1.666966e-01	ci right 1.676491e-01	k: 394527	n:2360000
SF3A1   2360000 perm   2849 sec   (828 perm/sec)   p_kst 1.671725e-01   p_cons 6.118644e-04   p_joint 3.133051e-03

Joint ci ratio: 4.543632e-02	ci left: 3.059656e-03	ci right 3.202321e-03	k: 7419	n:2370000
Cons ci ratio: 1.027710e-01	ci left: 5.819673e-04	ci right 6.454236e-04	k: 1453	n:2370000
KS ci ratio: 5.683210e-03	ci left: 1.667057e-01	ci right 1.676563e-01	k: 396218	n:2370000
SF3A1   2370000 perm   2870 sec   (826 perm/sec)   p_kst 1.671806e-01   p_cons 6.130802e-04   p_joint 3.130380e-03

Joint ci ratio: 4.532035e-02	ci left: 3.062586e-03	ci right 3.205014e-03	k: 7457	n:2380000
Cons ci ratio: 1.025596e-01	ci left: 5.819783e-04	ci right 6.452975e-04	k: 1459	n:2380000
KS ci ratio: 5.671966e-03	ci left: 1.666720e-01	ci right 1.676204e-01	k: 397807	n:2380000
SF3A1   2380000 perm   2894 sec   (822 perm/sec)   p_kst 1.671458e-01   p_cons 6.130252e-04   p_joint 3.133193e-03

Joint ci ratio: 4.523252e-02	ci left: 3.061768e-03	ci right 3.203875e-03	k: 7486	n:2390000
Cons ci ratio: 1.024545e-01	ci left: 5.807663e-04	ci right 6.438849e-04	k: 1462	n:2390000
KS ci ratio: 5.659675e-03	ci left: 1.666933e-01	ci right 1.676398e-01	k: 399527	n:2390000
SF3A1   2390000 perm   2916 sec   (820 perm/sec)   p_kst 1.671661e-01   p_cons 6.117155e-04   p_joint 3.132218e-03

Joint ci ratio: 4.513616e-02	ci left: 3.062194e-03	ci right 3.204009e-03	k: 7518	n:2400000
Cons ci ratio: 1.021407e-01	ci left: 5.820005e-04	ci right 6.450479e-04	k: 1471	n:2400000
KS ci ratio: 5.647404e-03	ci left: 1.667173e-01	ci right 1.676619e-01	k: 401254	n:2400000
SF3A1   2400000 perm   2937 sec   (817 perm/sec)   p_kst 1.671892e-01   p_cons 6.129167e-04   p_joint 3.132500e-03

Joint ci ratio: 4.500156e-02	ci left: 3.067950e-03	ci right 3.209597e-03	k: 7563	n:2410000
Cons ci ratio: 1.018987e-01	ci left: 5.824160e-04	ci right 6.453500e-04	k: 1478	n:2410000
KS ci ratio: 5.636279e-03	ci left: 1.666885e-01	ci right 1.676310e-01	k: 402854	n:2410000
SF3A1   2410000 perm   2960 sec   (814 perm/sec)   p_kst 1.671593e-01   p_cons 6.132780e-04   p_joint 3.138174e-03

Joint ci ratio: 4.489778e-02	ci left: 3.069572e-03	ci right 3.210959e-03	k: 7598	n:2420000
Cons ci ratio: 1.017269e-01	ci left: 5.820228e-04	ci right 6.448020e-04	k: 1483	n:2420000
KS ci ratio: 5.624927e-03	ci left: 1.666743e-01	ci right 1.676149e-01	k: 404489	n:2420000
SF3A1   2420000 perm   2982 sec   (811 perm/sec)   p_kst 1.671442e-01   p_cons 6.128099e-04   p_joint 3.139669e-03

Joint ci ratio: 4.477705e-02	ci left: 3.073624e-03	ci right 3.214807e-03	k: 7639	n:2430000
Cons ci ratio: 1.015219e-01	ci left: 5.820341e-04	ci right 6.446804e-04	k: 1489	n:2430000
KS ci ratio: 5.613154e-03	ci left: 1.666846e-01	ci right 1.676232e-01	k: 406183	n:2430000
SF3A1   2430000 perm   3004 sec   (809 perm/sec)   p_kst 1.671535e-01   p_cons 6.127572e-04   p_joint 3.143621e-03

Joint ci ratio: 4.710394e-02	ci left: 2.763650e-03	ci right 2.897370e-03	k: 6905	n:2440000
Cons ci ratio: 1.013520e-01	ci left: 5.816459e-04	ci right 6.441394e-04	k: 1494	n:2440000
KS ci ratio: 5.601504e-03	ci left: 1.666923e-01	ci right 1.676290e-01	k: 407871	n:2440000
SF3A1   2440000 perm   3027 sec   (806 perm/sec)   p_kst 1.671602e-01   p_cons 6.122951e-04   p_joint 2.829918e-03

Joint ci ratio: 4.701894e-02	ci left: 2.762454e-03	ci right 2.895869e-03	k: 6930	n:2450000
Cons ci ratio: 1.010819e-01	ci left: 5.824545e-04	ci right 6.448582e-04	k: 1502	n:2450000
KS ci ratio: 5.590214e-03	ci left: 1.666856e-01	ci right 1.676205e-01	k: 409524	n:2450000
SF3A1   2450000 perm   3049 sec   (804 perm/sec)   p_kst 1.671527e-01   p_cons 6.130612e-04   p_joint 2.828571e-03

Joint ci ratio: 4.691750e-02	ci left: 2.763276e-03	ci right 2.896435e-03	k: 6960	n:2460000
Cons ci ratio: 1.007472e-01	ci left: 5.840492e-04	ci right 6.464044e-04	k: 1512	n:2460000
KS ci ratio: 5.578469e-03	ci left: 1.667051e-01	ci right 1.676380e-01	k: 411241	n:2460000
SF3A1   2460000 perm   3071 sec   (801 perm/sec)   p_kst 1.671711e-01   p_cons 6.146341e-04   p_joint 2.829268e-03

Joint ci ratio: 4.683350e-02	ci left: 2.762092e-03	ci right 2.894949e-03	k: 6985	n:2470000
Cons ci ratio: 1.004158e-01	ci left: 5.856314e-04	ci right 6.479377e-04	k: 1522	n:2470000
KS ci ratio: 5.567349e-03	ci left: 1.666968e-01	ci right 1.676279e-01	k: 412890	n:2470000
SF3A1   2470000 perm   3094 sec   (798 perm/sec)   p_kst 1.671619e-01   p_cons 6.161943e-04   p_joint 2.827935e-03

Joint ci ratio: 4.434392e-02	ci left: 3.071466e-03	ci right 3.211150e-03	k: 7789	n:2480000
Cons ci ratio: 1.001531e-01	ci left: 5.864149e-04	ci right 6.486317e-04	k: 1530	n:2480000
KS ci ratio: 5.556231e-03	ci left: 1.666919e-01	ci right 1.676210e-01	k: 414547	n:2480000
SF3A1   2480000 perm   3117 sec   (796 perm/sec)   p_kst 1.671560e-01   p_cons 6.169355e-04   p_joint 3.140726e-03

Joint ci ratio: 4.427584e-02	ci left: 3.068662e-03	ci right 3.207999e-03	k: 7813	n:2490000
Cons ci ratio: 1.000552e-01	ci left: 5.852345e-04	ci right 6.472618e-04	k: 1533	n:2490000
KS ci ratio: 5.544812e-03	ci left: 1.667054e-01	ci right 1.676327e-01	k: 416250	n:2490000
SF3A1   2490000 perm   3139 sec   (793 perm/sec)   p_kst 1.671687e-01   p_cons 6.156627e-04   p_joint 3.137751e-03

Joint ci ratio: 4.418545e-02	ci left: 3.069046e-03	ci right 3.208109e-03	k: 7845	n:2500000
Cons ci ratio: 9.982763e-02	ci left: 5.856236e-04	ci right 6.475427e-04	k: 1540	n:2500000
KS ci ratio: 5.533311e-03	ci left: 1.667264e-01	ci right 1.676519e-01	k: 417972	n:2500000
SF3A1   2500000 perm   3162 sec   (791 perm/sec)   p_kst 1.671888e-01   p_cons 6.160000e-04   p_joint 3.138000e-03

Outputting figure to mutsig2_images.part000000000155/SF3A1.5_2446_2500000_0.16719_0.000616_0.003138.png
                gene_name: SF3A1
               theta_stop: 0.100 
                    nperm: 2500000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.00062 
      ci_cons_bounds_left: 0.00059 
     ci_cons_bounds_right: 0.00065 
                  p_joint: 0.0031 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0032 

Current progress: 53 percent done.
SF3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
Cons ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
KS ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
SF3B1   10000 perm   2 sec   (4563 perm/sec)   p_kst 3.233000e-01   p_cons 3.042000e-01   p_joint 4.601000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B1.5_4039_10000_0.3233_0.3042_0.4601.png
                gene_name: SF3B1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
SERINC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
Cons ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
KS ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
SERINC3   10000 perm   2 sec   (5520 perm/sec)   p_kst 3.142000e-01   p_cons 4.289000e-01   p_joint 4.223000e-01

Outputting figure to mutsig2_images.part000000000155/SERINC3.4_1462_10000_0.3142_0.4289_0.4223.png
                gene_name: SERINC3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 56 percent done.
SERPINA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
SERPINA7   10000 perm   2 sec   (5728 perm/sec)   p_kst 1.810000e-02   p_cons 4.589000e-01   p_joint 7.890000e-02

Joint ci ratio: 1.014602e-01	ci left: 6.591574e-02	ci right 7.301005e-02	k: 1388	n:20000
Cons ci ratio: 3.015100e-02	ci left: 4.510765e-01	ci right 4.649357e-01	k: 9160	n:20000
KS ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
SERPINA7   20000 perm   4 sec   (5095 perm/sec)   p_kst 1.555000e-02   p_cons 4.580000e-01   p_joint 6.940000e-02

Joint ci ratio: 8.264018e-02	ci left: 6.687632e-02	ci right 7.267400e-02	k: 2092	n:30000
Cons ci ratio: 2.446080e-02	ci left: 4.555465e-01	ci right 4.668611e-01	k: 13836	n:30000
KS ci ratio: 1.823706e-01	ci left: 1.378230e-02	ci right 1.657941e-02	k: 454	n:30000
SERPINA7   30000 perm   6 sec   (4851 perm/sec)   p_kst 1.513333e-02   p_cons 4.612000e-01   p_joint 6.973333e-02

Joint ci ratio: 8.678949e-02	ci left: 4.641514e-02	ci right 5.065071e-02	k: 1940	n:40000
Cons ci ratio: 2.117118e-02	ci left: 4.566051e-01	ci right 4.664005e-01	k: 18460	n:40000
KS ci ratio: 1.482657e-01	ci left: 1.590033e-02	ci right 1.847045e-02	k: 686	n:40000
SERPINA7   40000 perm   9 sec   (4701 perm/sec)   p_kst 1.715000e-02   p_cons 4.615000e-01   p_joint 4.850000e-02

Joint ci ratio: 9.076841e-02	ci left: 3.432542e-02	ci right 3.760874e-02	k: 1797	n:50000
Cons ci ratio: 1.891035e-02	ci left: 4.578022e-01	ci right 4.665621e-01	k: 23109	n:50000
KS ci ratio: 1.319696e-01	ci left: 1.619457e-02	ci right 1.850196e-02	k: 866	n:50000
SERPINA7   50000 perm   11 sec   (4575 perm/sec)   p_kst 1.732000e-02   p_cons 4.621800e-01   p_joint 3.594000e-02

Joint ci ratio: 7.386628e-02	ci left: 4.317486e-02	ci right 4.650268e-02	k: 2689	n:60000
Cons ci ratio: 1.785176e-02	ci left: 4.415674e-01	ci right 4.495379e-01	k: 26733	n:60000
KS ci ratio: 1.219958e-01	ci left: 1.588371e-02	ci right 1.796339e-02	k: 1014	n:60000
SERPINA7   60000 perm   13 sec   (4451 perm/sec)   p_kst 1.690000e-02   p_cons 4.455500e-01   p_joint 4.481667e-02

Joint ci ratio: 6.546281e-02	ci left: 4.713116e-02	ci right 5.033495e-02	k: 3410	n:70000
Cons ci ratio: 1.657569e-02	ci left: 4.404287e-01	ci right 4.478045e-01	k: 31088	n:70000
KS ci ratio: 1.140868e-01	ci left: 1.563867e-02	ci right 1.754456e-02	k: 1160	n:70000
SERPINA7   70000 perm   16 sec   (4349 perm/sec)   p_kst 1.657143e-02   p_cons 4.441143e-01   p_joint 4.871429e-02

Joint ci ratio: 5.822911e-02	ci left: 5.204925e-02	ci right 5.518322e-02	k: 4288	n:80000
Cons ci ratio: 1.549622e-02	ci left: 4.409525e-01	ci right 4.478515e-01	k: 35552	n:80000
KS ci ratio: 1.063870e-01	ci left: 1.579898e-02	ci right 1.758632e-02	k: 1334	n:80000
SERPINA7   80000 perm   19 sec   (4261 perm/sec)   p_kst 1.667500e-02   p_cons 4.444000e-01   p_joint 5.360000e-02

Joint ci ratio: 5.852683e-02	ci left: 4.608653e-02	ci right 4.887607e-02	k: 4272	n:90000
Cons ci ratio: 1.457423e-02	ci left: 4.423601e-01	ci right 4.488656e-01	k: 40105	n:90000
KS ci ratio: 1.006740e-01	ci left: 1.573198e-02	ci right 1.741050e-02	k: 1490	n:90000
SERPINA7   90000 perm   22 sec   (4177 perm/sec)   p_kst 1.655556e-02   p_cons 4.456111e-01   p_joint 4.746667e-02

Joint ci ratio: 5.819050e-02	ci left: 4.214539e-02	ci right 4.468118e-02	k: 4340	n:100000
Cons ci ratio: 1.383619e-02	ci left: 4.421763e-01	ci right 4.483469e-01	k: 44526	n:100000
KS ci ratio: 9.546875e-02	ci left: 1.578785e-02	ci right 1.738036e-02	k: 1657	n:100000
SERPINA7   100000 perm   24 sec   (4102 perm/sec)   p_kst 1.657000e-02   p_cons 4.452600e-01   p_joint 4.340000e-02

Outputting figure to mutsig2_images.part000000000155/SERPINA7.4_1264_100000_0.01657_0.44526_0.0434.png
                gene_name: SERPINA7
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 58 percent done.
SERPINB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
Cons ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
KS ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
SERPINB8   10000 perm   2 sec   (5358 perm/sec)   p_kst 3.366000e-01   p_cons 6.858000e-01   p_joint 5.157000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB8.4_1162_10000_0.3366_0.6858_0.5157.png
                gene_name: SERPINB8
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 59 percent done.
SERPINE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
Cons ci ratio: 3.064686e-02	ci left: 6.110055e-01	ci right 6.301242e-01	k: 6206	n:10000
KS ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
SERPINE2   10000 perm   2 sec   (5685 perm/sec)   p_kst 4.555000e-01   p_cons 6.206000e-01   p_joint 6.402000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINE2.4_1269_10000_0.4555_0.6206_0.6402.png
                gene_name: SERPINE2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 61 percent done.
SETD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
Cons ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
KS ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
SETD4   10000 perm   2 sec   (5403 perm/sec)   p_kst 3.350000e-01   p_cons 3.337000e-01   p_joint 3.854000e-01

Outputting figure to mutsig2_images.part000000000155/SETD4.4_1386_10000_0.335_0.3337_0.3854.png
                gene_name: SETD4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 62 percent done.
SERPING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
KS ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
SERPING1   10000 perm   2 sec   (6029 perm/sec)   p_kst 8.347000e-01   p_cons 6.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPING1.3_1531_10000_0.8347_0.6638_1.png
                gene_name: SERPING1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SERTAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
KS ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
SERTAD2   10000 perm   2 sec   (5985 perm/sec)   p_kst 6.277000e-01   p_cons 6.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERTAD2.3_949_10000_0.6277_0.6367_1.png
                gene_name: SERTAD2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SETD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
Cons ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
KS ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
SETD3   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.573000e-01   p_cons 3.260000e-01   p_joint 2.881000e-01

Outputting figure to mutsig2_images.part000000000155/SETD3.3_1879_10000_0.2573_0.326_0.2881.png
                gene_name: SETD3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 67 percent done.
SEZ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
KS ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
SEZ6   10000 perm   2 sec   (4925 perm/sec)   p_kst 8.247000e-01   p_cons 7.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SEZ6.3_3066_10000_0.8247_0.7048_1.png
                gene_name: SEZ6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SFMBT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
SFMBT1   10000 perm   2 sec   (5221 perm/sec)   p_kst 7.138000e-01   p_cons 1.519000e-01   p_joint 4.747000e-01

Outputting figure to mutsig2_images.part000000000155/SFMBT1.3_2681_10000_0.7138_0.1519_0.4747.png
                gene_name: SFMBT1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 70 percent done.
SFRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
Cons ci ratio: 9.661964e-03	ci left: 9.380680e-01	ci right 9.472720e-01	k: 9428	n:10000
KS ci ratio: 6.868280e-02	ci left: 2.371885e-01	ci right 2.541599e-01	k: 2456	n:10000
SFRP4   10000 perm   2 sec   (6009 perm/sec)   p_kst 2.456000e-01   p_cons 9.428000e-01   p_joint 3.657000e-01

Outputting figure to mutsig2_images.part000000000155/SFRP4.3_1065_10000_0.2456_0.9428_0.3657.png
                gene_name: SFRP4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 72 percent done.
SFRS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
Cons ci ratio: 3.940630e-02	ci left: 4.874523e-01	ci right 5.071493e-01	k: 4973	n:10000
KS ci ratio: 7.485738e-02	ci left: 2.070805e-01	ci right 2.232857e-01	k: 2151	n:10000
SFRS11   10000 perm   2 sec   (5829 perm/sec)   p_kst 2.151000e-01   p_cons 4.973000e-01   p_joint 4.119000e-01

Outputting figure to mutsig2_images.part000000000155/SFRS11.3_1503_10000_0.2151_0.4973_0.4119.png
                gene_name: SFRS11
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 73 percent done.
SERGEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
Cons ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
KS ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
SERGEF   10000 perm   2 sec   (6505 perm/sec)   p_kst 4.160000e-02   p_cons 7.677000e-01   p_joint 1.130000e-01

Joint ci ratio: 9.447857e-02	ci left: 7.549372e-02	ci right 8.302914e-02	k: 1584	n:20000
Cons ci ratio: 1.545689e-02	ci left: 7.568419e-01	ci right 7.686816e-01	k: 15256	n:20000
KS ci ratio: 1.370436e-01	ci left: 3.660089e-02	ci right 4.203409e-02	k: 785	n:20000
SERGEF   20000 perm   4 sec   (5675 perm/sec)   p_kst 3.925000e-02   p_cons 7.628000e-01   p_joint 7.920000e-02

Joint ci ratio: 4.335223e-02	ci left: 2.095025e-01	ci right 2.188196e-01	k: 6424	n:30000
Cons ci ratio: 1.261934e-02	ci left: 7.579782e-01	ci right 7.676375e-01	k: 22885	n:30000
KS ci ratio: 1.123935e-01	ci left: 3.677252e-02	ci right 4.118400e-02	k: 1168	n:30000
SERGEF   30000 perm   6 sec   (5334 perm/sec)   p_kst 3.893333e-02   p_cons 7.628333e-01   p_joint 2.141333e-01

Joint ci ratio: 3.780169e-02	ci left: 2.078541e-01	ci right 2.158877e-01	k: 8474	n:40000
Cons ci ratio: 1.100366e-02	ci left: 7.561354e-01	ci right 7.645267e-01	k: 30414	n:40000
KS ci ratio: 9.696979e-02	ci left: 3.734358e-02	ci right 4.117368e-02	k: 1569	n:40000
SERGEF   40000 perm   8 sec   (5112 perm/sec)   p_kst 3.922500e-02   p_cons 7.603500e-01   p_joint 2.118500e-01

Outputting figure to mutsig2_images.part000000000155/SERGEF.2_1421_40000_0.039225_0.76035_0.21185.png
                gene_name: SERGEF
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 75 percent done.
SERINC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
SERINC1   10000 perm   2 sec   (6191 perm/sec)   p_kst 1.218000e-01   p_cons 5.060000e-02   p_joint 2.390000e-02

Joint ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
Cons ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
KS ci ratio: 7.531074e-02	ci left: 1.147891e-01	ci right 1.238219e-01	k: 2385	n:20000
SERINC1   20000 perm   4 sec   (5438 perm/sec)   p_kst 1.192500e-01   p_cons 4.795000e-02   p_joint 2.255000e-02

Joint ci ratio: 2.473828e-01	ci left: 7.273253e-03	ci right 9.356987e-03	k: 248	n:30000
Cons ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
KS ci ratio: 6.157928e-02	ci left: 1.153235e-01	ci right 1.226838e-01	k: 3569	n:30000
SERINC1   30000 perm   6 sec   (5148 perm/sec)   p_kst 1.189667e-01   p_cons 4.883333e-02   p_joint 8.266667e-03

Joint ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
Cons ci ratio: 8.664882e-02	ci left: 4.656204e-02	ci right 5.080379e-02	k: 1946	n:40000
KS ci ratio: 5.346334e-02	ci left: 1.152986e-01	ci right 1.216569e-01	k: 4738	n:40000
SERINC1   40000 perm   8 sec   (4978 perm/sec)   p_kst 1.184500e-01   p_cons 4.865000e-02   p_joint 7.575000e-03

Joint ci ratio: 1.967052e-01	ci left: 7.104644e-03	ci right 8.673300e-03	k: 393	n:50000
Cons ci ratio: 7.683568e-02	ci left: 4.757567e-02	ci right 5.139685e-02	k: 2473	n:50000
KS ci ratio: 4.756786e-02	ci left: 1.167283e-01	ci right 1.224360e-01	k: 5978	n:50000
SERINC1   50000 perm   10 sec   (4836 perm/sec)   p_kst 1.195600e-01   p_cons 4.946000e-02   p_joint 7.860000e-03

Joint ci ratio: 1.706595e-01	ci left: 7.972428e-03	ci right 9.475671e-03	k: 522	n:60000
Cons ci ratio: 7.002709e-02	ci left: 4.789261e-02	ci right 5.138445e-02	k: 2977	n:60000
KS ci ratio: 4.326871e-02	ci left: 1.177236e-01	ci right 1.229465e-01	k: 7219	n:60000
SERINC1   60000 perm   13 sec   (4687 perm/sec)   p_kst 1.203167e-01   p_cons 4.961667e-02   p_joint 8.700000e-03

Joint ci ratio: 1.593449e-01	ci left: 7.888098e-03	ci right 9.267388e-03	k: 599	n:70000
Cons ci ratio: 6.486530e-02	ci left: 4.797503e-02	ci right 5.120530e-02	k: 3470	n:70000
KS ci ratio: 4.003566e-02	ci left: 1.180403e-01	ci right 1.228769e-01	k: 8431	n:70000
SERINC1   70000 perm   15 sec   (4573 perm/sec)   p_kst 1.204429e-01   p_cons 4.957143e-02   p_joint 8.557143e-03

Joint ci ratio: 1.506930e-01	ci left: 7.755135e-03	ci right 9.030902e-03	k: 670	n:80000
Cons ci ratio: 6.088506e-02	ci left: 4.776064e-02	ci right 5.077215e-02	k: 3940	n:80000
KS ci ratio: 3.749547e-02	ci left: 1.179417e-01	ci right 1.224609e-01	k: 9615	n:80000
SERINC1   80000 perm   18 sec   (4456 perm/sec)   p_kst 1.201875e-01   p_cons 4.925000e-02   p_joint 8.375000e-03

Joint ci ratio: 1.271179e-01	ci left: 9.790518e-03	ci right 1.113021e-02	k: 940	n:90000
Cons ci ratio: 5.733250e-02	ci left: 4.796035e-02	ci right 5.080212e-02	k: 4443	n:90000
KS ci ratio: 3.533439e-02	ci left: 1.181703e-01	ci right 1.224319e-01	k: 10826	n:90000
SERINC1   90000 perm   21 sec   (4356 perm/sec)   p_kst 1.202889e-01   p_cons 4.936667e-02   p_joint 1.044444e-02

Joint ci ratio: 1.202208e-01	ci left: 9.887173e-03	ci right 1.116146e-02	k: 1051	n:100000
Cons ci ratio: 5.440071e-02	ci left: 4.801562e-02	ci right 5.071059e-02	k: 4935	n:100000
KS ci ratio: 3.355446e-02	ci left: 1.180714e-01	ci right 1.221107e-01	k: 12008	n:100000
SERINC1   100000 perm   23 sec   (4257 perm/sec)   p_kst 1.200800e-01   p_cons 4.935000e-02   p_joint 1.051000e-02

Joint ci ratio: 1.277200e-01	ci left: 7.948329e-03	ci right 9.041459e-03	k: 933	n:110000
Cons ci ratio: 5.193248e-02	ci left: 4.796513e-02	ci right 5.053143e-02	k: 5416	n:110000
KS ci ratio: 3.191185e-02	ci left: 1.186990e-01	ci right 1.225574e-01	k: 13268	n:110000
SERINC1   110000 perm   26 sec   (4176 perm/sec)   p_kst 1.206182e-01   p_cons 4.923636e-02   p_joint 8.481818e-03

Joint ci ratio: 1.220960e-01	ci left: 7.996405e-03	ci right 9.044221e-03	k: 1021	n:120000
Cons ci ratio: 4.960451e-02	ci left: 4.823830e-02	ci right 5.070020e-02	k: 5935	n:120000
KS ci ratio: 3.054881e-02	ci left: 1.188121e-01	ci right 1.225062e-01	k: 14478	n:120000
SERINC1   120000 perm   29 sec   (4098 perm/sec)   p_kst 1.206500e-01   p_cons 4.945833e-02   p_joint 8.508333e-03

Joint ci ratio: 1.124477e-01	ci left: 8.740472e-03	ci right 9.789286e-03	k: 1203	n:130000
Cons ci ratio: 4.769621e-02	ci left: 4.821302e-02	ci right 5.057636e-02	k: 6420	n:130000
KS ci ratio: 2.928096e-02	ci left: 1.193847e-01	ci right 1.229399e-01	k: 15750	n:130000
SERINC1   130000 perm   32 sec   (4025 perm/sec)   p_kst 1.211538e-01   p_cons 4.938462e-02   p_joint 9.253846e-03

Joint ci ratio: 1.019134e-01	ci left: 9.923913e-03	ci right 1.099651e-02	k: 1463	n:140000
Cons ci ratio: 4.596096e-02	ci left: 4.825651e-02	ci right 5.053363e-02	k: 6914	n:140000
KS ci ratio: 2.821075e-02	ci left: 1.194876e-01	ci right 1.229138e-01	k: 16967	n:140000
SERINC1   140000 perm   35 sec   (3954 perm/sec)   p_kst 1.211929e-01   p_cons 4.938571e-02   p_joint 1.045000e-02

Joint ci ratio: 9.831757e-02	ci left: 9.970804e-03	ci right 1.100825e-02	k: 1572	n:150000
Cons ci ratio: 4.432996e-02	ci left: 4.844727e-02	ci right 5.065019e-02	k: 7431	n:150000
KS ci ratio: 2.725759e-02	ci left: 1.195193e-01	ci right 1.228287e-01	k: 18175	n:150000
SERINC1   150000 perm   39 sec   (3884 perm/sec)   p_kst 1.211667e-01   p_cons 4.954000e-02   p_joint 1.048000e-02

Outputting figure to mutsig2_images.part000000000155/SERINC1.2_1402_150000_0.12117_0.04954_0.01048.png
                gene_name: SERINC1
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0100 
    ci_joint_bounds_right: 0.011 

Current progress: 77 percent done.
SERINC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
Cons ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
SERINC5   10000 perm   2 sec   (6455 perm/sec)   p_kst 5.430000e-01   p_cons 4.262000e-01   p_joint 9.739000e-01

Outputting figure to mutsig2_images.part000000000155/SERINC5.2_1472_10000_0.543_0.4262_0.9739.png
                gene_name: SERINC5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 78 percent done.
SERPINA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
KS ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
SERPINA1   10000 perm   2 sec   (6242 perm/sec)   p_kst 4.065000e-01   p_cons 1.604000e-01   p_joint 1.790000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA1.2_1273_10000_0.4065_0.1604_0.179.png
                gene_name: SERPINA1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 80 percent done.
SERPINB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
Cons ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
KS ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
SERPINB10   10000 perm   1 sec   (6709 perm/sec)   p_kst 5.890000e-02   p_cons 1.230000e-01   p_joint 2.250000e-02

Joint ci ratio: 1.227707e-01	ci left: 4.551508e-02	ci right 5.151706e-02	k: 969	n:20000
Cons ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
KS ci ratio: 1.075810e-01	ci left: 5.889161e-02	ci right 6.563634e-02	k: 1244	n:20000
SERPINB10   20000 perm   3 sec   (5820 perm/sec)   p_kst 6.220000e-02   p_cons 1.236500e-01   p_joint 4.845000e-02

Joint ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
Cons ci ratio: 5.783371e-02	ci left: 1.289460e-01	ci right 1.366586e-01	k: 3983	n:30000
KS ci ratio: 8.787778e-02	ci left: 5.946019e-02	ci right 6.495830e-02	k: 1865	n:30000
SERPINB10   30000 perm   5 sec   (5496 perm/sec)   p_kst 6.216667e-02   p_cons 1.327667e-01   p_joint 6.550000e-02

Outputting figure to mutsig2_images.part000000000155/SERPINB10.2_1220_30000_0.062167_0.13277_0.0655.png
                gene_name: SERPINB10
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 81 percent done.
SERPINB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
SERPINB6   10000 perm   1 sec   (6785 perm/sec)   p_kst 8.520000e-02   p_cons 6.553000e-01   p_joint 1

Joint ci ratio: 2.518239e-02	ci left: 5.408707e-01	ci right 5.547154e-01	k: 10956	n:20000
Cons ci ratio: 1.995606e-02	ci left: 6.519806e-01	ci right 6.651732e-01	k: 13172	n:20000
KS ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
SERPINB6   20000 perm   3 sec   (5843 perm/sec)   p_kst 8.340000e-02   p_cons 6.586000e-01   p_joint 5.478000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB6.2_1155_20000_0.0834_0.6586_0.5478.png
                gene_name: SERPINB6
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 83 percent done.
SERPINB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974757e-02	ci left: 7.895889e-01	ci right 8.054374e-01	k: 7976	n:10000
Cons ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
KS ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
SERPINB9   10000 perm   2 sec   (6382 perm/sec)   p_kst 9.180000e-01   p_cons 4.358000e-01   p_joint 7.976000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB9.2_1155_10000_0.918_0.4358_0.7976.png
                gene_name: SERPINB9
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 84 percent done.
SERPINH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
SERPINH1   10000 perm   2 sec   (6254 perm/sec)   p_kst 2.970000e-01   p_cons 1.769000e-01   p_joint 2.570000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINH1.2_1273_10000_0.297_0.1769_0.257.png
                gene_name: SERPINH1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 86 percent done.
SERTAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
Cons ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
KS ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
SERTAD3   10000 perm   1 sec   (6804 perm/sec)   p_kst 9.237000e-01   p_cons 8.127000e-01   p_joint 9.718000e-01

Outputting figure to mutsig2_images.part000000000155/SERTAD3.2_595_10000_0.9237_0.8127_0.9718.png
                gene_name: SERTAD3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 88 percent done.
SESN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
SESN2   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.073000e-01   p_cons 9.409000e-01   p_joint 3.232000e-01

Joint ci ratio: 3.715554e-02	ci left: 3.508540e-01	ci right 3.641875e-01	k: 7150	n:20000
Cons ci ratio: 6.955406e-03	ci left: 9.374397e-01	ci right 9.440315e-01	k: 18816	n:20000
KS ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
SESN2   20000 perm   4 sec   (5401 perm/sec)   p_kst 1.088500e-01   p_cons 9.408000e-01   p_joint 3.575000e-01

Outputting figure to mutsig2_images.part000000000155/SESN2.2_1483_20000_0.10885_0.9408_0.3575.png
                gene_name: SESN2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 89 percent done.
SETD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
Cons ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
KS ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
SETD6   10000 perm   2 sec   (6045 perm/sec)   p_kst 4.428000e-01   p_cons 1.928000e-01   p_joint 3.325000e-01

Outputting figure to mutsig2_images.part000000000155/SETD6.2_1454_10000_0.4428_0.1928_0.3325.png
                gene_name: SETD6
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 91 percent done.
SETD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
SETD8   10000 perm   2 sec   (6042 perm/sec)   p_kst 8.184000e-01   p_cons 8.320000e-02   p_joint 4.662000e-01

Joint ci ratio: 3.998770e-02	ci left: 3.180123e-01	ci right 3.310388e-01	k: 6490	n:20000
Cons ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
KS ci ratio: 1.316279e-02	ci left: 8.105590e-01	ci right 8.213489e-01	k: 16320	n:20000
SETD8   20000 perm   4 sec   (5463 perm/sec)   p_kst 8.160000e-01   p_cons 8.335000e-02   p_joint 3.245000e-01

Outputting figure to mutsig2_images.part000000000155/SETD8.2_1091_20000_0.816_0.08335_0.3245.png
                gene_name: SETD8
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 92 percent done.
SETDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
Cons ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
KS ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
SETDB2   10000 perm   2 sec   (5734 perm/sec)   p_kst 3.910000e-02   p_cons 5.241000e-01   p_joint 2.455000e-01

Joint ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
Cons ci ratio: 2.660527e-02	ci left: 5.134987e-01	ci right 5.273953e-01	k: 10409	n:20000
KS ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
SETDB2   20000 perm   4 sec   (4972 perm/sec)   p_kst 3.940000e-02   p_cons 5.204500e-01   p_joint 1.277000e-01

Joint ci ratio: 4.916771e-02	ci left: 1.705173e-01	ci right 1.791458e-01	k: 5244	n:30000
Cons ci ratio: 2.164904e-02	ci left: 5.164957e-01	ci right 5.278333e-01	k: 15665	n:30000
KS ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
SETDB2   30000 perm   6 sec   (4761 perm/sec)   p_kst 3.940000e-02   p_cons 5.221667e-01   p_joint 1.748000e-01

Joint ci ratio: 4.371518e-02	ci left: 1.637036e-01	ci right 1.710448e-01	k: 6694	n:40000
Cons ci ratio: 1.887761e-02	ci left: 5.138398e-01	ci right 5.236575e-01	k: 20750	n:40000
KS ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
SETDB2   40000 perm   9 sec   (4607 perm/sec)   p_kst 4.015000e-02   p_cons 5.187500e-01   p_joint 1.673500e-01

Outputting figure to mutsig2_images.part000000000155/SETDB2.2_2216_40000_0.04015_0.51875_0.16735.png
                gene_name: SETDB2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 94 percent done.
SF3B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
KS ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
SF3B5   10000 perm   1 sec   (7046 perm/sec)   p_kst 4.113000e-01   p_cons 2.755000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SF3B5.2_265_10000_0.4113_0.2755_1.png
                gene_name: SF3B5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
Cons ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
KS ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
SFI1   10000 perm   2 sec   (4766 perm/sec)   p_kst 7.830000e-01   p_cons 3.207000e-01   p_joint 4.613000e-01

Outputting figure to mutsig2_images.part000000000155/SFI1.2_3857_10000_0.783_0.3207_0.4613.png
                gene_name: SFI1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 97 percent done.
SFPQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
Cons ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
SFPQ   10000 perm   2 sec   (5745 perm/sec)   p_kst 6.280000e-02   p_cons 1.919000e-01   p_joint 8.450000e-02

Joint ci ratio: 9.243538e-02	ci left: 7.867398e-02	ci right 8.634791e-02	k: 1649	n:20000
Cons ci ratio: 5.726817e-02	ci left: 1.843362e-01	ci right 1.952541e-01	k: 3795	n:20000
KS ci ratio: 1.097596e-01	ci left: 5.665039e-02	ci right 6.327826e-02	k: 1198	n:20000
SFPQ   20000 perm   4 sec   (5018 perm/sec)   p_kst 5.990000e-02   p_cons 1.897500e-01   p_joint 8.245000e-02

Joint ci ratio: 7.537415e-02	ci left: 7.957438e-02	ci right 8.584004e-02	k: 2480	n:30000
Cons ci ratio: 4.676454e-02	ci left: 1.853100e-01	ci right 1.942168e-01	k: 5692	n:30000
KS ci ratio: 9.030195e-02	ci left: 5.642509e-02	ci right 6.179402e-02	k: 1772	n:30000
SFPQ   30000 perm   6 sec   (4731 perm/sec)   p_kst 5.906667e-02   p_cons 1.897333e-01   p_joint 8.266667e-02

Outputting figure to mutsig2_images.part000000000155/SFPQ.2_2164_30000_0.059067_0.18973_0.082667.png
                gene_name: SFPQ
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 98 percent done.
SFRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
KS ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
SFRP2   10000 perm   2 sec   (6572 perm/sec)   p_kst 9.913000e-01   p_cons 5.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SFRP2.2_900_10000_0.9913_0.5964_1.png
                gene_name: SFRP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000155
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 155 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 4422473: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000156> was used as the working directory.
Started at Wed Oct 24 18:07:28 2012
Results reported at Wed Oct 24 18:18:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000156.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000156.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 156  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000156.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    809.91 sec.
    Max Memory :      5338 MB
    Max Swap   :      7675 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
156
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 156
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 156: processing genes 14024 - 14113
Calculating significance of each gene.
Using projection method.
14024	SFRS12	1
14025	SFRS12IP1	1
14026	SFRS13B	1
14027	SFRS14	9.280058e-01
14028	SFRS15	9.953994e-01
14029	SFRS16	1
14030	SFRS17A	1
14031	SFRS18	8.705059e-01
14032	SFRS2	1
14033	SFRS2B	1
14034	SFRS2IP	8.642055e-01
14035	SFRS3	1.057907e-01
14036	SFRS4	8.854795e-01
14037	SFRS5	7.884719e-01
14038	SFRS6	7.985261e-01
14039	SFRS7	1
14040	SFRS8	8.311892e-01
14041	SFRS9	1
14042	SFT2D1	1
14043	SFT2D2	2.494225e-01
14044	SFTA2	1
14045	SFTA3	1
14046	SFTPA1	6.499186e-01
14047	SFTPA2	2.561211e-01
14048	SFTPB	1.628143e-01
14049	SFTPC	6.079693e-01
14050	SFTPD	6.273448e-01
14051	SFXN1	1
14052	SFXN2	7.655887e-01
14053	SFXN3	4.664957e-01
14054	SFXN4	1
14055	SFXN5	6.333209e-01
14056	SGCA	4.724233e-01
14057	SGCB	8.431743e-01
14058	SGCD	3.224043e-02
14059	SGCE	1
14060	SGCG	6.120503e-01
14061	SGCZ	7.718769e-01
14062	SGEF	6.962976e-01
14063	SGIP1	9.660328e-04
14064	SGK1	7.637787e-01
14065	SGK196	1
14066	SGK2	6.854783e-01
14067	SGK223	9.993739e-01
14068	SGK269	9.880884e-01
14069	SGK3	1
14070	SGK494	1
14071	SGMS1	8.027247e-01
14072	SGMS2	4.409524e-01
14073	SGOL1	1
14074	SGOL2	9.065662e-01
14075	SGPL1	4.388355e-01
14076	SGPP1	8.500192e-01
14077	SGPP2	1
14078	SGSH	1
14079	SGSM1	9.686164e-01
14080	SGSM2	1
14081	SGSM3	9.448650e-01
14082	SGTA	4.822062e-01
14083	SGTB	4.912624e-01
14084	SH2B1	9.709238e-01
14085	SH2B2	1
14086	SH2B3	9.046982e-01
14087	SH2D1A	5.078598e-01
14088	SH2D1B	2.374859e-01
14089	SH2D2A	7.003203e-01
14090	SH2D3A	9.463798e-01
14091	SH2D3C	2.459131e-01
14092	SH2D4A	7.475059e-01
14093	SH2D4B	1.605968e-02
14094	SH2D5	1
14095	SH2D6	3.634770e-01
14096	SH2D7	5.123733e-01
14097	SH3BGR	1
14098	SH3BGRL	2.170385e-01
14099	SH3BGRL2	2.777748e-01
14100	SH3BGRL3	1
14101	SH3BP1	5.366776e-01
14102	SH3BP2	6.761920e-01
14103	SH3BP4	7.339583e-01
14104	SH3BP5	7.811586e-01
14105	SH3BP5L	1.555455e-01
14106	SH3D19	1.653110e-01
14107	SH3GL1	1
14108	SH3GL2	2.368971e-01
14109	SH3GL3	1.677376e-01
14110	SH3GLB1	8.980513e-01
14111	SH3GLB2	7.623411e-01
14112	SH3KBP1	8.917947e-01
14113	SH3PXD2A	6.642782e-01
Done

Running MutSig 2:
Scatter job 156: processing genes 14024 - 14113
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SGIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
Cons ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
KS ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
SGIP1   10000 perm   2 sec   (4059 perm/sec)   p_kst 3.015000e-01   p_cons 2.506000e-01   p_joint 3.115000e-01

Outputting figure to mutsig2_images.part000000000156/SGIP1.17_2587_10000_0.3015_0.2506_0.3115.png
                gene_name: SGIP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 2 percent done.
SFRS2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
SFRS2IP   10000 perm   3 sec   (3776 perm/sec)   p_kst 2.004000e-01   p_cons 1.179000e-01   p_joint 9.830000e-02

Joint ci ratio: 7.836327e-02	ci left: 1.068256e-01	ci right 1.155878e-01	k: 2223	n:20000
Cons ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
KS ci ratio: 5.541916e-02	ci left: 1.945248e-01	ci right 2.056626e-01	k: 4001	n:20000
SFRS2IP   20000 perm   6 sec   (3414 perm/sec)   p_kst 2.000500e-01   p_cons 1.293000e-01   p_joint 1.111500e-01

Outputting figure to mutsig2_images.part000000000156/SFRS2IP.12_4448_20000_0.20005_0.1293_0.11115.png
                gene_name: SFRS2IP
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 4 percent done.
SGOL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
SGOL2   10000 perm   2 sec   (4355 perm/sec)   p_kst 7.784000e-01   p_cons 8.039000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000156/SGOL2.9_3838_10000_0.7784_0.8039_0.9245.png
                gene_name: SGOL2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 6 percent done.
SH2D3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
KS ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
SH2D3C   10000 perm   2 sec   (4524 perm/sec)   p_kst 2.474000e-01   p_cons 9.447000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D3C.9_2764_10000_0.2474_0.9447_0.3964.png
                gene_name: SH2D3C
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 8 percent done.
SH3BP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
Cons ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
KS ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
SH3BP4   10000 perm   2 sec   (4750 perm/sec)   p_kst 7.704000e-01   p_cons 8.431000e-01   p_joint 8.966000e-01

Outputting figure to mutsig2_images.part000000000156/SH3BP4.9_2908_10000_0.7704_0.8431_0.8966.png
                gene_name: SH3BP4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 10 percent done.
SH3PXD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
Cons ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
KS ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
SH3PXD2A   10000 perm   2 sec   (4284 perm/sec)   p_kst 4.738000e-01   p_cons 7.725000e-01   p_joint 7.111000e-01

Outputting figure to mutsig2_images.part000000000156/SH3PXD2A.9_3374_10000_0.4738_0.7725_0.7111.png
                gene_name: SH3PXD2A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 12 percent done.
SGK269
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
SGK269   10000 perm   3 sec   (3785 perm/sec)   p_kst 1.818000e-01   p_cons 7.093000e-01   p_joint 5.250000e-01

Outputting figure to mutsig2_images.part000000000156/SGK269.8_5257_10000_0.1818_0.7093_0.525.png
                gene_name: SGK269
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 15 percent done.
SH2D2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
Cons ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
KS ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
SH2D2A   10000 perm   2 sec   (5128 perm/sec)   p_kst 3.940000e-01   p_cons 9.499000e-01   p_joint 6.425000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D2A.7_1232_10000_0.394_0.9499_0.6425.png
                gene_name: SH2D2A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 17 percent done.
SFRS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
Cons ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KS ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
SFRS14   10000 perm   2 sec   (4921 perm/sec)   p_kst 4.997000e-01   p_cons 3.500000e-02   p_joint 9.640000e-02

Joint ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
Cons ci ratio: 1.472962e-01	ci left: 3.167591e-02	ci right 3.676068e-02	k: 683	n:20000
KS ci ratio: 2.603006e-02	ci left: 5.244050e-01	ci right 5.382859e-01	k: 10627	n:20000
SFRS14   20000 perm   5 sec   (4312 perm/sec)   p_kst 5.313500e-01   p_cons 3.415000e-02   p_joint 9.565000e-02

Joint ci ratio: 6.542699e-02	ci left: 1.033594e-01	ci right 1.103836e-01	k: 3205	n:30000
Cons ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
KS ci ratio: 2.137015e-02	ci left: 5.229655e-01	ci right 5.342956e-01	k: 15859	n:30000
SFRS14   30000 perm   7 sec   (4075 perm/sec)   p_kst 5.286333e-01   p_cons 3.266667e-02   p_joint 1.068333e-01

Joint ci ratio: 6.115445e-02	ci left: 9.029421e-02	ci right 9.601502e-02	k: 3725	n:40000
Cons ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
KS ci ratio: 1.861839e-02	ci left: 5.207423e-01	ci right 5.305539e-01	k: 21026	n:40000
SFRS14   40000 perm   10 sec   (3917 perm/sec)   p_kst 5.256500e-01   p_cons 3.185000e-02   p_joint 9.312500e-02

Joint ci ratio: 5.401991e-02	ci left: 9.270031e-02	ci right 9.786679e-02	k: 4763	n:50000
Cons ci ratio: 9.586270e-02	ci left: 3.080662e-02	ci right 3.392798e-02	k: 1617	n:50000
KS ci ratio: 1.667797e-02	ci left: 5.205115e-01	ci right 5.292856e-01	k: 26245	n:50000
SFRS14   50000 perm   13 sec   (3815 perm/sec)   p_kst 5.249000e-01   p_cons 3.234000e-02   p_joint 9.526000e-02

Outputting figure to mutsig2_images.part000000000156/SFRS14.6_3285_50000_0.5249_0.03234_0.09526.png
                gene_name: SFRS14
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 19 percent done.
SFRS17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
Cons ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
KS ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
SFRS17A   10000 perm   2 sec   (5627 perm/sec)   p_kst 8.521000e-01   p_cons 2.127000e-01   p_joint 5.216000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS17A.6_2104_10000_0.8521_0.2127_0.5216.png
                gene_name: SFRS17A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 21 percent done.
SGCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
KS ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
SGCD   10000 perm   2 sec   (5318 perm/sec)   p_kst 1.587000e-01   p_cons 6.919000e-01   p_joint 3.076000e-01

Outputting figure to mutsig2_images.part000000000156/SGCD.6_977_10000_0.1587_0.6919_0.3076.png
                gene_name: SGCD
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 23 percent done.
SH2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
Cons ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
KS ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
SH2B1   10000 perm   2 sec   (5214 perm/sec)   p_kst 1.699000e-01   p_cons 8.226000e-01   p_joint 3.323000e-01

Outputting figure to mutsig2_images.part000000000156/SH2B1.6_2460_10000_0.1699_0.8226_0.3323.png
                gene_name: SH2B1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 25 percent done.
SH3BP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
SH3BP5L   10000 perm   2 sec   (5946 perm/sec)   p_kst 8.354000e-01   p_cons 8.165000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3BP5L.6_1206_10000_0.8354_0.8165_1.png
                gene_name: SH3BP5L
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SH3D19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
KS ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
SH3D19   10000 perm   2 sec   (4634 perm/sec)   p_kst 8.862000e-01   p_cons 8.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3D19.6_2433_10000_0.8862_0.8736_1.png
                gene_name: SH3D19
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SH3GL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
Cons ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
KS ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
SH3GL3   10000 perm   2 sec   (5928 perm/sec)   p_kst 6.090000e-02   p_cons 7.588000e-01   p_joint 1.032000e-01

Joint ci ratio: 6.786953e-02	ci left: 1.380769e-01	ci right 1.478272e-01	k: 2858	n:20000
Cons ci ratio: 1.548464e-02	ci left: 7.561864e-01	ci right 7.680373e-01	k: 15243	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
SH3GL3   20000 perm   4 sec   (5100 perm/sec)   p_kst 6.120000e-02   p_cons 7.621500e-01   p_joint 1.429000e-01

Joint ci ratio: 6.628674e-02	ci left: 1.009288e-01	ci right 1.078814e-01	k: 3131	n:30000
Cons ci ratio: 1.274369e-02	ci left: 7.543872e-01	ci right 7.640959e-01	k: 22778	n:30000
KS ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
SH3GL3   30000 perm   6 sec   (4778 perm/sec)   p_kst 6.213333e-02   p_cons 7.592667e-01   p_joint 1.043667e-01

Outputting figure to mutsig2_images.part000000000156/SH3GL3.6_1080_30000_0.062133_0.75927_0.10437.png
                gene_name: SH3GL3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
SFRS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
Cons ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
KS ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
SFRS8   10000 perm   2 sec   (5026 perm/sec)   p_kst 5.125000e-01   p_cons 4.400000e-01   p_joint 5.607000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS8.5_2928_10000_0.5125_0.44_0.5607.png
                gene_name: SFRS8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 33 percent done.
SH2D4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 4.709308e-02	ci left: 3.995407e-01	ci right 4.189122e-01	k: 4092	n:10000
SH2D4B   10000 perm   2 sec   (6307 perm/sec)   p_kst 4.092000e-01   p_cons 4.000000e-03   p_joint 9.900000e-03

Joint ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
Cons ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
KS ci ratio: 3.313822e-02	ci left: 4.047679e-01	ci right 4.184578e-01	k: 8232	n:20000
SH2D4B   20000 perm   4 sec   (5412 perm/sec)   p_kst 4.116000e-01   p_cons 4.400000e-03   p_joint 5.200000e-03

Joint ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
Cons ci ratio: 3.317134e-01	ci left: 3.865922e-03	ci right 5.432388e-03	k: 138	n:30000
KS ci ratio: 2.695779e-02	ci left: 4.078195e-01	ci right 4.189973e-01	k: 12402	n:30000
SH2D4B   30000 perm   6 sec   (5058 perm/sec)   p_kst 4.134000e-01   p_cons 4.600000e-03   p_joint 1.943333e-02

Joint ci ratio: 1.294076e-01	ci left: 2.097207e-02	ci right 2.389783e-02	k: 896	n:40000
Cons ci ratio: 2.757965e-01	ci left: 4.332419e-03	ci right 5.740914e-03	k: 200	n:40000
KS ci ratio: 2.340073e-02	ci left: 4.074451e-01	ci right 4.171176e-01	k: 16491	n:40000
SH2D4B   40000 perm   8 sec   (4866 perm/sec)   p_kst 4.122750e-01   p_cons 5.000000e-03   p_joint 2.240000e-02

Joint ci ratio: 1.219696e-01	ci left: 1.900419e-02	ci right 2.149195e-02	k: 1011	n:50000
Cons ci ratio: 2.429429e-01	ci left: 4.550863e-03	ci right 5.827623e-03	k: 258	n:50000
KS ci ratio: 2.088882e-02	ci left: 4.089190e-01	ci right 4.175711e-01	k: 20662	n:50000
SH2D4B   50000 perm   11 sec   (4717 perm/sec)   p_kst 4.132400e-01   p_cons 5.160000e-03   p_joint 2.022000e-02

Joint ci ratio: 1.217519e-01	ci left: 1.594838e-02	ci right 1.803205e-02	k: 1018	n:60000
Cons ci ratio: 2.220633e-01	ci left: 4.592973e-03	ci right 5.755681e-03	k: 309	n:60000
KS ci ratio: 1.906787e-02	ci left: 4.093225e-01	ci right 4.172192e-01	k: 24796	n:60000
SH2D4B   60000 perm   13 sec   (4589 perm/sec)   p_kst 4.132667e-01   p_cons 5.150000e-03   p_joint 1.696667e-02

Joint ci ratio: 1.144381e-01	ci left: 1.554148e-02	ci right 1.744176e-02	k: 1153	n:70000
Cons ci ratio: 2.054957e-01	ci left: 4.639981e-03	ci right 5.715950e-03	k: 361	n:70000
KS ci ratio: 1.768821e-02	ci left: 4.086643e-01	ci right 4.159716e-01	k: 28862	n:70000
SH2D4B   70000 perm   16 sec   (4476 perm/sec)   p_kst 4.123143e-01   p_cons 5.157143e-03   p_joint 1.647143e-02

Joint ci ratio: 9.792390e-02	ci left: 1.867502e-02	ci right 2.061004e-02	k: 1570	n:80000
Cons ci ratio: 1.905446e-01	ci left: 4.760989e-03	ci right 5.775398e-03	k: 420	n:80000
KS ci ratio: 1.659853e-02	ci left: 4.073629e-01	ci right 4.141936e-01	k: 32862	n:80000
SH2D4B   80000 perm   18 sec   (4381 perm/sec)   p_kst 4.107750e-01   p_cons 5.250000e-03   p_joint 1.962500e-02

Joint ci ratio: 9.867407e-02	ci left: 1.638229e-02	ci right 1.809347e-02	k: 1550	n:90000
Cons ci ratio: 1.793857e-01	ci left: 4.804238e-03	ci right 5.761408e-03	k: 474	n:90000
KS ci ratio: 1.561655e-02	ci left: 4.085709e-01	ci right 4.150126e-01	k: 37061	n:90000
SH2D4B   90000 perm   21 sec   (4281 perm/sec)   p_kst 4.117889e-01   p_cons 5.266667e-03   p_joint 1.722222e-02

Joint ci ratio: 8.967537e-02	ci left: 1.790850e-02	ci right 1.959957e-02	k: 1874	n:100000
Cons ci ratio: 1.691806e-01	ci left: 4.888111e-03	ci right 5.800941e-03	k: 533	n:100000
KS ci ratio: 1.482648e-02	ci left: 4.083676e-01	ci right 4.144775e-01	k: 41142	n:100000
SH2D4B   100000 perm   24 sec   (4193 perm/sec)   p_kst 4.114200e-01   p_cons 5.330000e-03   p_joint 1.874000e-02

Joint ci ratio: 8.830304e-02	ci left: 1.682224e-02	ci right 1.838516e-02	k: 1935	n:110000
Cons ci ratio: 1.626208e-01	ci left: 4.827121e-03	ci right 5.690189e-03	k: 577	n:110000
KS ci ratio: 1.415862e-02	ci left: 4.077543e-01	ci right 4.135777e-01	k: 45173	n:110000
SH2D4B   110000 perm   27 sec   (4109 perm/sec)   p_kst 4.106636e-01   p_cons 5.245455e-03   p_joint 1.759091e-02

Joint ci ratio: 8.624277e-02	ci left: 1.619455e-02	ci right 1.766226e-02	k: 2030	n:120000
Cons ci ratio: 1.556413e-01	ci left: 4.848949e-03	ci right 5.675238e-03	k: 630	n:120000
KS ci ratio: 1.354925e-02	ci left: 4.081143e-01	ci right 4.136900e-01	k: 49308	n:120000
SH2D4B   120000 perm   30 sec   (4020 perm/sec)   p_kst 4.109000e-01   p_cons 5.250000e-03   p_joint 1.691667e-02

Joint ci ratio: 7.402511e-02	ci left: 2.033316e-02	ci right 2.190369e-02	k: 2744	n:130000
Cons ci ratio: 1.575661e-01	ci left: 4.365003e-03	ci right 5.118889e-03	k: 615	n:130000
KS ci ratio: 1.302682e-02	ci left: 4.078856e-01	ci right 4.132415e-01	k: 53373	n:130000
SH2D4B   130000 perm   33 sec   (3953 perm/sec)   p_kst 4.105615e-01   p_cons 4.730769e-03   p_joint 2.110769e-02

Joint ci ratio: 7.000318e-02	ci left: 2.113969e-02	ci right 2.268020e-02	k: 3066	n:140000
Cons ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
KS ci ratio: 1.254845e-02	ci left: 4.081570e-01	ci right 4.133181e-01	k: 57503	n:140000
SH2D4B   140000 perm   36 sec   (3886 perm/sec)   p_kst 4.107357e-01   p_cons 4.735714e-03   p_joint 2.190000e-02

Joint ci ratio: 6.464563e-02	ci left: 2.315262e-02	ci right 2.470586e-02	k: 3588	n:150000
Cons ci ratio: 1.202613e-01	ci left: 6.610171e-03	ci right 7.462385e-03	k: 1054	n:150000
KS ci ratio: 1.211501e-02	ci left: 4.085618e-01	ci right 4.135483e-01	k: 61658	n:150000
SH2D4B   150000 perm   39 sec   (3810 perm/sec)   p_kst 4.110533e-01   p_cons 7.026667e-03   p_joint 2.392000e-02

Joint ci ratio: 6.069687e-02	ci left: 2.463455e-02	ci right 2.618271e-02	k: 4064	n:160000
Cons ci ratio: 1.162519e-01	ci left: 6.645863e-03	ci right 7.472151e-03	k: 1128	n:160000
KS ci ratio: 1.173585e-02	ci left: 4.084128e-01	ci right 4.132404e-01	k: 65732	n:160000
SH2D4B   160000 perm   43 sec   (3743 perm/sec)   p_kst 4.108250e-01   p_cons 7.050000e-03   p_joint 2.540000e-02

Joint ci ratio: 6.015474e-02	ci left: 2.363698e-02	ci right 2.510871e-02	k: 4142	n:170000
Cons ci ratio: 1.126657e-01	ci left: 6.672053e-03	ci right 7.474307e-03	k: 1201	n:170000
KS ci ratio: 1.138549e-02	ci left: 4.084834e-01	ci right 4.131667e-01	k: 69840	n:170000
SH2D4B   170000 perm   46 sec   (3678 perm/sec)   p_kst 4.108235e-01   p_cons 7.064706e-03   p_joint 2.436471e-02

Joint ci ratio: 5.924469e-02	ci left: 2.304051e-02	ci right 2.445266e-02	k: 4273	n:180000
Cons ci ratio: 1.092197e-01	ci left: 6.717300e-03	ci right 7.498701e-03	k: 1278	n:180000
KS ci ratio: 1.106538e-02	ci left: 4.085203e-01	ci right 4.130714e-01	k: 73943	n:180000
SH2D4B   180000 perm   50 sec   (3613 perm/sec)   p_kst 4.107944e-01   p_cons 7.100000e-03   p_joint 2.373889e-02

Joint ci ratio: 5.993133e-02	ci left: 2.136067e-02	ci right 2.268555e-02	k: 4183	n:190000
Cons ci ratio: 1.059538e-01	ci left: 6.773492e-03	ci right 7.536398e-03	k: 1358	n:190000
KS ci ratio: 1.077236e-02	ci left: 4.084867e-01	ci right 4.129161e-01	k: 78033	n:190000
SH2D4B   190000 perm   53 sec   (3557 perm/sec)   p_kst 4.107000e-01   p_cons 7.147368e-03   p_joint 2.201579e-02

Joint ci ratio: 5.542568e-02	ci left: 2.372328e-02	ci right 2.508055e-02	k: 4879	n:200000
Cons ci ratio: 1.244664e-01	ci left: 4.627732e-03	ci right 5.246750e-03	k: 986	n:200000
KS ci ratio: 1.050253e-02	ci left: 4.084078e-01	ci right 4.127247e-01	k: 82113	n:200000
SH2D4B   200000 perm   57 sec   (3496 perm/sec)   p_kst 4.105650e-01   p_cons 4.930000e-03   p_joint 2.439500e-02

Joint ci ratio: 5.610953e-02	ci left: 2.207657e-02	ci right 2.335570e-02	k: 4769	n:210000
Cons ci ratio: 1.210187e-01	ci left: 4.670466e-03	ci right 5.276656e-03	k: 1043	n:210000
KS ci ratio: 1.025242e-02	ci left: 4.083188e-01	ci right 4.125313e-01	k: 86189	n:210000
SH2D4B   210000 perm   61 sec   (3434 perm/sec)   p_kst 4.104238e-01   p_cons 4.966667e-03   p_joint 2.270952e-02

Joint ci ratio: 5.493289e-02	ci left: 2.200091e-02	ci right 2.324808e-02	k: 4976	n:220000
Cons ci ratio: 1.188227e-01	ci left: 4.630121e-03	ci right 5.219403e-03	k: 1082	n:220000
KS ci ratio: 1.001428e-02	ci left: 4.084842e-01	ci right 4.126000e-01	k: 90319	n:220000
SH2D4B   220000 perm   65 sec   (3382 perm/sec)   p_kst 4.105409e-01   p_cons 4.918182e-03   p_joint 2.261818e-02

Joint ci ratio: 5.674598e-02	ci left: 1.974897e-02	ci right 2.090664e-02	k: 4674	n:230000
Cons ci ratio: 1.100426e-01	ci left: 5.184905e-03	ci right 5.792877e-03	k: 1261	n:230000
KS ci ratio: 9.410534e-03	ci left: 4.279841e-01	ci right 4.320350e-01	k: 98902	n:230000
SH2D4B   230000 perm   69 sec   (3331 perm/sec)   p_kst 4.300087e-01   p_cons 5.482609e-03   p_joint 2.032174e-02

Joint ci ratio: 6.028474e-02	ci left: 1.679032e-02	ci right 1.783805e-02	k: 4154	n:240000
Cons ci ratio: 1.076792e-01	ci left: 5.195849e-03	ci right 5.791189e-03	k: 1317	n:240000
KS ci ratio: 9.212092e-03	ci left: 4.280431e-01	ci right 4.320086e-01	k: 103206	n:240000
SH2D4B   240000 perm   73 sec   (3279 perm/sec)   p_kst 4.300250e-01   p_cons 5.487500e-03   p_joint 1.730833e-02

Joint ci ratio: 5.875753e-02	ci left: 1.697777e-02	ci right 1.800946e-02	k: 4372	n:250000
Cons ci ratio: 1.055777e-01	ci left: 5.194361e-03	ci right 5.777194e-03	k: 1370	n:250000
KS ci ratio: 9.020249e-03	ci left: 4.283940e-01	ci right 4.322796e-01	k: 107584	n:250000
SH2D4B   250000 perm   77 sec   (3228 perm/sec)   p_kst 4.303360e-01   p_cons 5.480000e-03   p_joint 1.748800e-02

Joint ci ratio: 5.839177e-02	ci left: 1.654069e-02	ci right 1.753935e-02	k: 4429	n:260000
Cons ci ratio: 1.038149e-01	ci left: 5.170610e-03	ci right 5.740500e-03	k: 1417	n:260000
KS ci ratio: 8.841849e-03	ci left: 4.286110e-01	ci right 4.324213e-01	k: 111934	n:260000
SH2D4B   260000 perm   82 sec   (3182 perm/sec)   p_kst 4.305154e-01   p_cons 5.450000e-03   p_joint 1.703462e-02

Joint ci ratio: 5.932243e-02	ci left: 1.544247e-02	ci right 1.639018e-02	k: 4296	n:270000
Cons ci ratio: 1.016502e-01	ci left: 5.199231e-03	ci right 5.759613e-03	k: 1478	n:270000
KS ci ratio: 8.676513e-03	ci left: 4.286497e-01	ci right 4.323888e-01	k: 116240	n:270000
SH2D4B   270000 perm   86 sec   (3139 perm/sec)   p_kst 4.305185e-01   p_cons 5.474074e-03   p_joint 1.591111e-02

Joint ci ratio: 5.990126e-02	ci left: 1.461283e-02	ci right 1.551868e-02	k: 4217	n:280000
Cons ci ratio: 9.997526e-02	ci left: 5.187611e-03	ci right 5.736987e-03	k: 1528	n:280000
KS ci ratio: 8.519869e-03	ci left: 4.287006e-01	ci right 4.323722e-01	k: 120550	n:280000
SH2D4B   280000 perm   90 sec   (3096 perm/sec)   p_kst 4.305357e-01   p_cons 5.457143e-03   p_joint 1.506071e-02

Outputting figure to mutsig2_images.part000000000156/SH2D4B.5_1146_280000_0.43054_0.0054571_0.015061.png
                gene_name: SH2D4B
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 35 percent done.
SFRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
Cons ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
KS ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
SFRS3   10000 perm   1 sec   (6795 perm/sec)   p_kst 2.261000e-01   p_cons 9.800000e-01   p_joint 3.744000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS3.4_515_10000_0.2261_0.98_0.3744.png
                gene_name: SFRS3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 38 percent done.
SFRS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
Cons ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
KS ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
SFRS4   10000 perm   2 sec   (6091 perm/sec)   p_kst 2.507000e-01   p_cons 1.794000e-01   p_joint 3.824000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS4.4_1509_10000_0.2507_0.1794_0.3824.png
                gene_name: SFRS4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
SFRS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
Cons ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
KS ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
SFRS6   10000 perm   2 sec   (6068 perm/sec)   p_kst 3.552000e-01   p_cons 4.626000e-01   p_joint 5.005000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS6.4_1059_10000_0.3552_0.4626_0.5005.png
                gene_name: SFRS6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 42 percent done.
SGEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
Cons ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
KS ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
SGEF   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.318000e-01   p_cons 8.880000e-01   p_joint 5.405000e-01

Outputting figure to mutsig2_images.part000000000156/SGEF.4_2458_10000_0.3318_0.888_0.5405.png
                gene_name: SGEF
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 44 percent done.
SGPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
Cons ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
KS ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
SGPL1   10000 perm   2 sec   (5681 perm/sec)   p_kst 6.519000e-01   p_cons 5.843000e-01   p_joint 8.172000e-01

Outputting figure to mutsig2_images.part000000000156/SGPL1.4_1763_10000_0.6519_0.5843_0.8172.png
                gene_name: SGPL1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 46 percent done.
SGSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
SGSM1   10000 perm   2 sec   (4842 perm/sec)   p_kst 6.842000e-01   p_cons 6.870000e-02   p_joint 2.485000e-01

Joint ci ratio: 4.659290e-02	ci left: 2.552708e-01	ci right 2.674987e-01	k: 5227	n:20000
Cons ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
KS ci ratio: 1.864381e-02	ci left: 6.820297e-01	ci right 6.949154e-01	k: 13770	n:20000
SGSM1   20000 perm   5 sec   (4352 perm/sec)   p_kst 6.885000e-01   p_cons 6.530000e-02   p_joint 2.613500e-01

Joint ci ratio: 3.769479e-02	ci left: 2.599460e-01	ci right 2.699663e-01	k: 7948	n:30000
Cons ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
KS ci ratio: 1.531865e-02	ci left: 6.805127e-01	ci right 6.910513e-01	k: 20574	n:30000
SGSM1   30000 perm   7 sec   (4118 perm/sec)   p_kst 6.858000e-01   p_cons 6.520000e-02   p_joint 2.649333e-01

Outputting figure to mutsig2_images.part000000000156/SGSM1.4_3551_30000_0.6858_0.0652_0.26493.png
                gene_name: SGSM1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 48 percent done.
SH3GL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
SH3GL2   10000 perm   2 sec   (6268 perm/sec)   p_kst 4.304000e-01   p_cons 1.140000e-01   p_joint 1.802000e-01

Joint ci ratio: 5.753019e-02	ci left: 1.829518e-01	ci right 1.938389e-01	k: 3767	n:20000
Cons ci ratio: 7.746481e-02	ci left: 1.090861e-01	ci right 1.179266e-01	k: 2269	n:20000
KS ci ratio: 3.238708e-02	ci left: 4.158903e-01	ci right 4.296321e-01	k: 8455	n:20000
SH3GL2   20000 perm   4 sec   (5598 perm/sec)   p_kst 4.227500e-01   p_cons 1.134500e-01   p_joint 1.883500e-01

Outputting figure to mutsig2_images.part000000000156/SH3GL2.4_1095_20000_0.42275_0.11345_0.18835.png
                gene_name: SH3GL2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
SFRS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
Cons ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
KS ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
SFRS18   10000 perm   2 sec   (5444 perm/sec)   p_kst 7.972000e-01   p_cons 8.176000e-01   p_joint 9.704000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS18.3_2458_10000_0.7972_0.8176_0.9704.png
                gene_name: SFRS18
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 52 percent done.
SFTPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
KS ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
SFTPA2   10000 perm   2 sec   (6488 perm/sec)   p_kst 7.477000e-01   p_cons 6.595000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFTPA2.3_763_10000_0.7477_0.6595_1.png
                gene_name: SFTPA2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
SFTPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.265292e-02	ci left: 8.998033e-01	ci right 9.113592e-01	k: 9057	n:10000
KS ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
SFTPB   10000 perm   2 sec   (5942 perm/sec)   p_kst 8.654000e-01   p_cons 9.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFTPB.3_1222_10000_0.8654_0.9057_1.png
                gene_name: SFTPB
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
SFXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
KS ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
SFXN3   10000 perm   2 sec   (6349 perm/sec)   p_kst 7.773000e-01   p_cons 6.065000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFXN3.3_1022_10000_0.7773_0.6065_1.png
                gene_name: SFXN3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SGCZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
KS ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
SGCZ   10000 perm   1 sec   (7083 perm/sec)   p_kst 6.398000e-01   p_cons 3.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGCZ.3_971_10000_0.6398_0.357_1.png
                gene_name: SGCZ
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
SGK1   10000 perm   2 sec   (5910 perm/sec)   p_kst 3.701000e-01   p_cons 6.569000e-01   p_joint 4.188000e-01

Outputting figure to mutsig2_images.part000000000156/SGK1.3_2003_10000_0.3701_0.6569_0.4188.png
                gene_name: SGK1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
SGK223
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
Cons ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
SGK223   10000 perm   2 sec   (4715 perm/sec)   p_kst 8.069000e-01   p_cons 8.430000e-02   p_joint 2.521000e-01

Joint ci ratio: 4.540442e-02	ci left: 2.652954e-01	ci right 2.776711e-01	k: 5429	n:20000
Cons ci ratio: 9.434933e-02	ci left: 7.568938e-02	ci right 8.323342e-02	k: 1588	n:20000
KS ci ratio: 1.388769e-02	ci left: 7.937313e-01	ci right 8.048815e-01	k: 15987	n:20000
SGK223   20000 perm   5 sec   (4236 perm/sec)   p_kst 7.993500e-01   p_cons 7.940000e-02   p_joint 2.714500e-01

Outputting figure to mutsig2_images.part000000000156/SGK223.3_4229_20000_0.79935_0.0794_0.27145.png
                gene_name: SGK223
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 65 percent done.
SGMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
Cons ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
KS ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
SGMS2   10000 perm   2 sec   (6510 perm/sec)   p_kst 3.637000e-01   p_cons 2.200000e-02   p_joint 2.083000e-01

Joint ci ratio: 5.177713e-02	ci left: 2.169495e-01	ci right 2.285313e-01	k: 4454	n:20000
Cons ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
KS ci ratio: 3.679837e-02	ci left: 3.552853e-01	ci right 3.686548e-01	k: 7239	n:20000
SGMS2   20000 perm   4 sec   (5661 perm/sec)   p_kst 3.619500e-01   p_cons 2.385000e-02   p_joint 2.227000e-01

Joint ci ratio: 5.125991e-02	ci left: 1.589354e-01	ci right 1.673300e-01	k: 4893	n:30000
Cons ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
KS ci ratio: 2.995270e-02	ci left: 3.579541e-01	ci right 3.688724e-01	k: 10902	n:30000
SGMS2   30000 perm   6 sec   (5343 perm/sec)   p_kst 3.634000e-01   p_cons 2.323333e-02   p_joint 1.631000e-01

Joint ci ratio: 4.480476e-02	ci left: 1.570141e-01	ci right 1.642352e-01	k: 6424	n:40000
Cons ci ratio: 1.255930e-01	ci left: 2.227994e-02	ci right 2.528974e-02	k: 950	n:40000
KS ci ratio: 2.588987e-02	ci left: 3.595815e-01	ci right 3.690382e-01	k: 14572	n:40000
SGMS2   40000 perm   8 sec   (5135 perm/sec)   p_kst 3.643000e-01   p_cons 2.375000e-02   p_joint 1.606000e-01

Joint ci ratio: 3.984512e-02	ci left: 1.589388e-01	ci right 1.654204e-01	k: 8108	n:50000
Cons ci ratio: 1.115081e-01	ci left: 2.277345e-02	ci right 2.548219e-02	k: 1205	n:50000
KS ci ratio: 2.311790e-02	ci left: 3.608579e-01	ci right 3.693178e-01	k: 18254	n:50000
SGMS2   50000 perm   10 sec   (4977 perm/sec)   p_kst 3.650800e-01   p_cons 2.410000e-02   p_joint 1.621600e-01

Joint ci ratio: 3.332256e-02	ci left: 1.842844e-01	ci right 1.905459e-01	k: 11244	n:60000
Cons ci ratio: 1.018721e-01	ci left: 2.285511e-02	ci right 2.532455e-02	k: 1444	n:60000
KS ci ratio: 2.107940e-02	ci left: 3.617614e-01	ci right 3.694850e-01	k: 21937	n:60000
SGMS2   60000 perm   12 sec   (4842 perm/sec)   p_kst 3.656167e-01   p_cons 2.406667e-02   p_joint 1.874000e-01

Joint ci ratio: 2.358071e-02	ci left: 2.796934e-01	ci right 2.863817e-01	k: 19812	n:70000
Cons ci ratio: 9.368608e-02	ci left: 2.325569e-02	ci right 2.555540e-02	k: 1707	n:70000
KS ci ratio: 1.950151e-02	ci left: 3.623872e-01	ci right 3.695382e-01	k: 25617	n:70000
SGMS2   70000 perm   15 sec   (4725 perm/sec)   p_kst 3.659571e-01   p_cons 2.438571e-02   p_joint 2.830286e-01

Outputting figure to mutsig2_images.part000000000156/SGMS2.3_1118_70000_0.36596_0.024386_0.28303.png
                gene_name: SGMS2
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 67 percent done.
SH2D3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
Cons ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
KS ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
SH2D3A   10000 perm   2 sec   (5950 perm/sec)   p_kst 1.931000e-01   p_cons 1.470000e-01   p_joint 1.332000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D3A.3_1767_10000_0.1931_0.147_0.1332.png
                gene_name: SH2D3A
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 69 percent done.
SH3BP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
Cons ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
SH3BP1   10000 perm   2 sec   (6247 perm/sec)   p_kst 4.264000e-01   p_cons 8.682000e-01   p_joint 9.786000e-01

Outputting figure to mutsig2_images.part000000000156/SH3BP1.2_2178_10000_0.4264_0.8682_0.9786.png
                gene_name: SH3BP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 71 percent done.
SH3BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
Cons ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
KS ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
SH3BP2   10000 perm   2 sec   (5690 perm/sec)   p_kst 8.342000e-01   p_cons 1.077000e-01   p_joint 3.483000e-01

Joint ci ratio: 4.018461e-02	ci left: 3.158738e-01	ci right 3.288779e-01	k: 6447	n:20000
Cons ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
KS ci ratio: 1.264499e-02	ci left: 8.224443e-01	ci right 8.329602e-01	k: 16555	n:20000
SH3BP2   20000 perm   4 sec   (5119 perm/sec)   p_kst 8.277500e-01   p_cons 1.105500e-01   p_joint 3.223500e-01

Outputting figure to mutsig2_images.part000000000156/SH3BP2.3_1993_20000_0.82775_0.11055_0.32235.png
                gene_name: SH3BP2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 73 percent done.
SFT2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
Cons ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
KS ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
SFT2D2   10000 perm   2 sec   (6293 perm/sec)   p_kst 4.082000e-01   p_cons 8.270000e-02   p_joint 2.442000e-01

Joint ci ratio: 5.237497e-02	ci left: 2.130369e-01	ci right 2.245450e-01	k: 4375	n:20000
Cons ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
KS ci ratio: 3.322388e-02	ci left: 4.035212e-01	ci right 4.172048e-01	k: 8207	n:20000
SFT2D2   20000 perm   3 sec   (5725 perm/sec)   p_kst 4.103500e-01   p_cons 7.890000e-02   p_joint 2.187500e-01

Outputting figure to mutsig2_images.part000000000156/SFT2D2.2_515_20000_0.41035_0.0789_0.21875.png
                gene_name: SFT2D2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 75 percent done.
SFTPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
Cons ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
KS ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
SFTPD   10000 perm   2 sec   (6588 perm/sec)   p_kst 2.950000e-02   p_cons 2.974000e-01   p_joint 9.750000e-02

Joint ci ratio: 8.271826e-02	ci left: 9.675894e-02	ci right 1.051575e-01	k: 2018	n:20000
Cons ci ratio: 4.396285e-02	ci left: 2.781545e-01	ci right 2.907082e-01	k: 5688	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
SFTPD   20000 perm   4 sec   (5711 perm/sec)   p_kst 2.830000e-02   p_cons 2.844000e-01   p_joint 1.009000e-01

Joint ci ratio: 7.641991e-02	ci left: 7.754365e-02	ci right 8.373785e-02	k: 2418	n:30000
Cons ci ratio: 3.581492e-02	ci left: 2.802277e-01	ci right 2.904806e-01	k: 8560	n:30000
KS ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
SFTPD   30000 perm   6 sec   (5394 perm/sec)   p_kst 2.830000e-02   p_cons 2.853333e-01   p_joint 8.060000e-02

Joint ci ratio: 5.368202e-02	ci left: 1.144585e-01	ci right 1.207971e-01	k: 4704	n:40000
Cons ci ratio: 3.115730e-02	ci left: 2.790866e-01	ci right 2.879449e-01	k: 11340	n:40000
KS ci ratio: 1.134630e-01	ci left: 2.732867e-02	ci right 3.064018e-02	k: 1158	n:40000
SFTPD   40000 perm   8 sec   (5170 perm/sec)   p_kst 2.895000e-02   p_cons 2.835000e-01   p_joint 1.176000e-01

Joint ci ratio: 3.432071e-02	ci left: 2.033564e-01	ci right 2.104776e-01	k: 10345	n:50000
Cons ci ratio: 2.791226e-02	ci left: 2.789149e-01	ci right 2.868303e-01	k: 14143	n:50000
KS ci ratio: 1.008679e-01	ci left: 2.783916e-02	ci right 3.081582e-02	k: 1465	n:50000
SFTPD   50000 perm   10 sec   (5009 perm/sec)   p_kst 2.930000e-02   p_cons 2.828600e-01   p_joint 2.069000e-01

Joint ci ratio: 3.135779e-02	ci left: 2.033829e-01	ci right 2.098788e-01	k: 12397	n:60000
Cons ci ratio: 2.544872e-02	ci left: 2.797631e-01	ci right 2.869912e-01	k: 17002	n:60000
KS ci ratio: 9.200413e-02	ci left: 2.801393e-02	ci right 3.073185e-02	k: 1761	n:60000
SFTPD   60000 perm   12 sec   (4887 perm/sec)   p_kst 2.935000e-02   p_cons 2.833667e-01   p_joint 2.066167e-01

Outputting figure to mutsig2_images.part000000000156/SFTPD.2_1156_60000_0.02935_0.28337_0.20662.png
                gene_name: SFTPD
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 77 percent done.
SFXN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
KS ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
SFXN5   10000 perm   2 sec   (6470 perm/sec)   p_kst 7.467000e-01   p_cons 8.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFXN5.2_1079_10000_0.7467_0.8258_1.png
                gene_name: SFXN5
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SGCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
Cons ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
SGCA   10000 perm   1 sec   (6795 perm/sec)   p_kst 4.318000e-01   p_cons 9.371000e-01   p_joint 7.388000e-01

Outputting figure to mutsig2_images.part000000000156/SGCA.2_1200_10000_0.4318_0.9371_0.7388.png
                gene_name: SGCA
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 81 percent done.
SGK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 2.112780e-02	ci left: 7.665848e-01	ci right 7.830548e-01	k: 7749	n:10000
SGK2   10000 perm   1 sec   (6833 perm/sec)   p_kst 7.749000e-01   p_cons 6.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGK2.2_1332_10000_0.7749_0.6173_1.png
                gene_name: SGK2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SGOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
Cons ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
KS ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
SGOL1   10000 perm   2 sec   (6027 perm/sec)   p_kst 6.477000e-01   p_cons 1.124000e-01   p_joint 2.563000e-01

Joint ci ratio: 4.982374e-02	ci left: 2.304262e-01	ci right 2.422505e-01	k: 4726	n:20000
Cons ci ratio: 7.830386e-02	ci left: 1.069730e-01	ci right 1.157403e-01	k: 2226	n:20000
KS ci ratio: 2.058097e-02	ci left: 6.379209e-01	ci right 6.512370e-01	k: 12892	n:20000
SGOL1   20000 perm   4 sec   (5360 perm/sec)   p_kst 6.446000e-01   p_cons 1.113000e-01   p_joint 2.363000e-01

Outputting figure to mutsig2_images.part000000000156/SGOL1.2_1738_20000_0.6446_0.1113_0.2363.png
                gene_name: SGOL1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
SGSM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
SGSM3   10000 perm   2 sec   (5716 perm/sec)   p_kst 7.786000e-01   p_cons 2.547000e-01   p_joint 9.408000e-01

Outputting figure to mutsig2_images.part000000000156/SGSM3.2_2334_10000_0.7786_0.2547_0.9408.png
                gene_name: SGSM3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 88 percent done.
SGTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
KS ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
SGTA   10000 perm   1 sec   (6917 perm/sec)   p_kst 6.038000e-01   p_cons 6.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGTA.2_982_10000_0.6038_0.6149_1.png
                gene_name: SGTA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SGTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
SGTB   10000 perm   1 sec   (6738 perm/sec)   p_kst 7.364000e-01   p_cons 2.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGTB.2_955_10000_0.7364_0.2299_1.png
                gene_name: SGTB
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SH2D4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
Cons ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
KS ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
SH2D4A   10000 perm   2 sec   (6376 perm/sec)   p_kst 2.730000e-02   p_cons 4.039000e-01   p_joint 5.150000e-02

Joint ci ratio: 3.041345e-02	ci left: 4.467824e-01	ci right 4.606311e-01	k: 9074	n:20000
Cons ci ratio: 3.313138e-02	ci left: 4.048676e-01	ci right 4.185580e-01	k: 8234	n:20000
KS ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
SH2D4A   20000 perm   4 sec   (5536 perm/sec)   p_kst 2.925000e-02   p_cons 4.117000e-01   p_joint 4.537000e-01

Joint ci ratio: 7.214093e-02	ci left: 8.635850e-02	ci right 9.285457e-02	k: 2687	n:30000
Cons ci ratio: 2.706367e-02	ci left: 4.059235e-01	ci right 4.170936e-01	k: 12345	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
SH2D4A   30000 perm   6 sec   (5242 perm/sec)   p_kst 2.883333e-02   p_cons 4.115000e-01   p_joint 8.956667e-02

Joint ci ratio: 6.529768e-02	ci left: 7.994483e-02	ci right 8.536594e-02	k: 3305	n:40000
Cons ci ratio: 2.354985e-02	ci left: 4.043758e-01	ci right 4.140374e-01	k: 16368	n:40000
KS ci ratio: 1.131618e-01	ci left: 2.747453e-02	ci right 3.079429e-02	k: 1164	n:40000
SH2D4A   40000 perm   8 sec   (5054 perm/sec)   p_kst 2.910000e-02   p_cons 4.092000e-01   p_joint 8.262500e-02

Joint ci ratio: 4.245642e-02	ci left: 1.425587e-01	ci right 1.487625e-01	k: 7282	n:50000
Cons ci ratio: 2.187967e-02	ci left: 3.866793e-01	ci right 3.952534e-01	k: 19548	n:50000
KS ci ratio: 1.006559e-01	ci left: 2.795622e-02	ci right 3.093875e-02	k: 1471	n:50000
SH2D4A   50000 perm   10 sec   (4920 perm/sec)   p_kst 2.942000e-02   p_cons 3.909600e-01   p_joint 1.456400e-01

Joint ci ratio: 3.870442e-02	ci left: 1.431669e-01	ci right 1.488340e-01	k: 8759	n:60000
Cons ci ratio: 1.993966e-02	ci left: 3.878577e-01	ci right 3.956861e-01	k: 23506	n:60000
KS ci ratio: 9.165636e-02	ci left: 2.822576e-02	ci right 3.095333e-02	k: 1774	n:60000
SH2D4A   60000 perm   13 sec   (4798 perm/sec)   p_kst 2.956667e-02   p_cons 3.917667e-01   p_joint 1.459833e-01

Outputting figure to mutsig2_images.part000000000156/SH2D4A.2_1451_60000_0.029567_0.39177_0.14598.png
                gene_name: SH2D4A
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 94 percent done.
SH2D7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
KS ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
SH2D7   10000 perm   1 sec   (6723 perm/sec)   p_kst 8.725000e-01   p_cons 1.730000e-02   p_joint 4.300000e-02

Joint ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
Cons ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
KS ci ratio: 1.064220e-02	ci left: 8.668339e-01	ci right 8.761579e-01	k: 17431	n:20000
SH2D7   20000 perm   3 sec   (5852 perm/sec)   p_kst 8.715500e-01   p_cons 1.760000e-02   p_joint 5.745000e-02

Joint ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
Cons ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
KS ci ratio: 8.661230e-03	ci left: 8.684368e-01	ci right 8.760243e-01	k: 26168	n:30000
SH2D7   30000 perm   5 sec   (5476 perm/sec)   p_kst 8.722667e-01   p_cons 1.510000e-02   p_joint 4.050000e-02

Joint ci ratio: 7.481437e-02	ci left: 6.181718e-02	ci right 6.664632e-02	k: 2568	n:40000
Cons ci ratio: 1.586924e-01	ci left: 1.383162e-02	ci right 1.623954e-02	k: 600	n:40000
KS ci ratio: 7.467601e-03	ci left: 8.699501e-01	ci right 8.764957e-01	k: 34930	n:40000
SH2D7   40000 perm   8 sec   (5295 perm/sec)   p_kst 8.732500e-01   p_cons 1.500000e-02   p_joint 6.420000e-02

Joint ci ratio: 7.114559e-02	ci left: 5.519992e-02	ci right 5.929168e-02	k: 2861	n:50000
Cons ci ratio: 1.429324e-01	ci left: 1.375982e-02	ci right 1.589705e-02	k: 740	n:50000
KS ci ratio: 6.666788e-03	ci left: 8.707162e-01	ci right 8.765603e-01	k: 43683	n:50000
SH2D7   50000 perm   10 sec   (5135 perm/sec)   p_kst 8.736600e-01   p_cons 1.480000e-02   p_joint 5.722000e-02

Joint ci ratio: 1.091343e-01	ci left: 1.990003e-02	ci right 2.221329e-02	k: 1262	n:60000
Cons ci ratio: 1.310185e-01	ci left: 1.373609e-02	ci right 1.567793e-02	k: 881	n:60000
KS ci ratio: 6.119646e-03	ci left: 8.697376e-01	ci right 8.750930e-01	k: 52346	n:60000
SH2D7   60000 perm   12 sec   (4998 perm/sec)   p_kst 8.724333e-01   p_cons 1.468333e-02   p_joint 2.103333e-02

Joint ci ratio: 5.985079e-02	ci left: 5.601203e-02	ci right 5.948188e-02	k: 4041	n:70000
Cons ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
KS ci ratio: 5.668696e-03	ci left: 8.698194e-01	ci right 8.747783e-01	k: 61062	n:70000
SH2D7   70000 perm   14 sec   (4880 perm/sec)   p_kst 8.723143e-01   p_cons 1.482857e-02   p_joint 5.772857e-02

Joint ci ratio: 7.125690e-02	ci left: 3.514966e-02	ci right 3.775910e-02	k: 2915	n:80000
Cons ci ratio: 1.129307e-01	ci left: 1.399893e-02	ci right 1.568652e-02	k: 1186	n:80000
KS ci ratio: 5.301414e-03	ci left: 8.700305e-01	ci right 8.746675e-01	k: 69789	n:80000
SH2D7   80000 perm   17 sec   (4761 perm/sec)   p_kst 8.723625e-01   p_cons 1.482500e-02   p_joint 3.643750e-02

Joint ci ratio: 8.791839e-02	ci left: 2.066013e-02	ci right 2.257088e-02	k: 1944	n:90000
Cons ci ratio: 1.066496e-01	ci left: 1.399958e-02	ci right 1.558748e-02	k: 1330	n:90000
KS ci ratio: 5.005842e-03	ci left: 8.698222e-01	ci right 8.741983e-01	k: 78482	n:90000
SH2D7   90000 perm   19 sec   (4652 perm/sec)   p_kst 8.720222e-01   p_cons 1.477778e-02   p_joint 2.160000e-02

Joint ci ratio: 7.725510e-02	ci left: 2.412944e-02	ci right 2.607824e-02	k: 2509	n:100000
Cons ci ratio: 1.013121e-01	ci left: 1.400218e-02	ci right 1.550616e-02	k: 1474	n:100000
KS ci ratio: 4.744953e-03	ci left: 8.701250e-01	ci right 8.742734e-01	k: 87221	n:100000
SH2D7   100000 perm   22 sec   (4558 perm/sec)   p_kst 8.722100e-01   p_cons 1.474000e-02   p_joint 2.509000e-02

Joint ci ratio: 7.958039e-02	ci left: 2.072226e-02	ci right 2.244855e-02	k: 2373	n:110000
Cons ci ratio: 9.737691e-02	ci left: 1.381073e-02	ci right 1.523322e-02	k: 1596	n:110000
KS ci ratio: 4.516764e-03	ci left: 8.705878e-01	ci right 8.745380e-01	k: 95983	n:110000
SH2D7   110000 perm   25 sec   (4464 perm/sec)   p_kst 8.725727e-01   p_cons 1.450909e-02   p_joint 2.157273e-02

Outputting figure to mutsig2_images.part000000000156/SH2D7.2_1380_110000_0.87257_0.014509_0.021573.png
                gene_name: SH2D7
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 96 percent done.
SH3BP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
KS ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
SH3BP5   10000 perm   2 sec   (6122 perm/sec)   p_kst 8.822000e-01   p_cons 4.404000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3BP5.2_1404_10000_0.8822_0.4404_1.png
                gene_name: SH3BP5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SH3KBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
SH3KBP1   10000 perm   2 sec   (6032 perm/sec)   p_kst 2.556000e-01   p_cons 2.637000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000156/SH3KBP1.2_2141_10000_0.2556_0.2637_0.3446.png
                gene_name: SH3KBP1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000156
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 156 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 4422478: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000157> was used as the working directory.
Started at Wed Oct 24 18:07:36 2012
Results reported at Wed Oct 24 18:23:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000157.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000157.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 157  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000157.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1069.59 sec.
    Max Memory :      5417 MB
    Max Swap   :      7934 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
157
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 157
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 157: processing genes 14114 - 14204
Calculating significance of each gene.
Using projection method.
14114	SH3PXD2B	9.561281e-01
14115	SH3RF1	8.426385e-01
14116	SH3RF2	8.832565e-01
14117	SH3RF3	8.714100e-01
14118	SH3TC1	9.485025e-01
14119	SH3TC2	9.482310e-01
14120	SH3YL1	1
14121	SHANK1	8.125375e-01
14122	SHANK2	3.253481e-01
14123	SHANK3	1
14124	SHARPIN	7.907097e-01
14125	SHB	8.251904e-01
14126	SHBG	5.279017e-01
14127	SHC1	1
14128	SHC2	1
14129	SHC3	1
14130	SHC4	7.168474e-01
14131	SHCBP1	4.686147e-01
14132	SHD	6.630045e-01
14133	SHE	8.218619e-01
14134	SHF	3.187627e-01
14135	SHFM1	2.854110e-01
14136	SHH	5.381965e-01
14137	SHISA2	3.198641e-02
14138	SHISA3	7.863417e-01
14139	SHISA4	2.773440e-01
14140	SHISA5	5.230912e-01
14141	SHKBP1	9.548775e-01
14142	SHMT1	6.672074e-01
14143	SHMT2	8.569527e-01
14144	SHOC2	4.070161e-01
14145	SHOX	5.858017e-01
14146	SHOX2	4.088257e-01
14147	SHPK	7.825525e-01
14148	SHPRH	3.091922e-01
14149	SHQ1	1.861452e-01
14150	SHROOM1	8.234405e-01
14151	SHROOM2	9.335775e-01
14152	SHROOM3	9.995792e-01
14153	SHROOM4	9.907597e-01
14154	SI	1
14155	SIAE	9.755780e-01
14156	SIAH1	1
14157	SIAH2	4.364476e-01
14158	SIAH3	3.130528e-01
14159	SIDT1	8.366882e-01
14160	SIDT2	1
14161	SIGIRR	1
14162	SIGLEC1	9.998866e-01
14163	SIGLEC10	2.641352e-01
14164	SIGLEC11	9.705999e-01
14165	SIGLEC12	1.969299e-01
14166	SIGLEC14	1.543474e-01
14167	SIGLEC15	1.891605e-01
14168	SIGLEC5	1.003512e-01
14169	SIGLEC6	6.203668e-01
14170	SIGLEC7	3.844827e-01
14171	SIGLEC8	5.594880e-02
14172	SIGLEC9	2.139383e-03
14173	SIGMAR1	3.925489e-01
14174	SIK1	8.692425e-01
14175	SIK2	2.167989e-01
14176	SIK3	9.774673e-01
14177	SIKE1	7.825158e-01
14178	SIL1	9.404655e-01
14179	SILV	9.031060e-01
14180	SIM1	5.384431e-01
14181	SIM2	7.512770e-01
14182	SIN3A	8.606539e-01
14183	SIN3B	1
14184	SIP1	6.169328e-01
14185	SIPA1	9.815495e-01
14186	SIPA1L1	9.994723e-01
14187	SIPA1L2	1
14188	SIPA1L3	1
14189	SIRPA	1.020066e-01
14190	SIRPB1	1.618619e-01
14191	SIRPB2	2.716040e-01
14192	SIRPD	3.531239e-01
14193	SIRPG	5.390461e-01
14194	SIRT1	9.600286e-01
14195	SIRT2	7.400716e-01
14196	SIRT3	4.861947e-01
14197	SIRT4	5.725876e-01
14198	SIRT5	1
14199	SIRT6	7.112816e-01
14200	SIRT7	3.173421e-01
14201	SIT1	1.526040e-01
14202	SIVA1	1
14203	SIX1	6.370559e-01
14204	SIX2	1.155254e-01
Done

Running MutSig 2:
Scatter job 157: processing genes 14114 - 14204
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
Cons ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
KS ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
SI   10000 perm   4 sec   (2831 perm/sec)   p_kst 6.920000e-01   p_cons 8.144000e-01   p_joint 8.244000e-01

Outputting figure to mutsig2_images.part000000000157/SI.63_5672_10000_0.692_0.8144_0.8244.png
                gene_name: SI
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 1 percent done.
SIPA1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
SIPA1L2   10000 perm   3 sec   (3654 perm/sec)   p_kst 1.528000e-01   p_cons 6.480000e-02   p_joint 1.132000e-01

Joint ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
Cons ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
KS ci ratio: 6.415587e-02	ci left: 1.522299e-01	ci right 1.623700e-01	k: 3145	n:20000
SIPA1L2   20000 perm   6 sec   (3309 perm/sec)   p_kst 1.572500e-01   p_cons 7.260000e-02   p_joint 7.270000e-02

Outputting figure to mutsig2_images.part000000000157/SIPA1L2.21_5253_20000_0.15725_0.0726_0.0727.png
                gene_name: SIPA1L2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 3 percent done.
SHPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
SHPRH   10000 perm   2 sec   (4108 perm/sec)   p_kst 3.470000e-01   p_cons 4.799000e-01   p_joint 5.014000e-01

Outputting figure to mutsig2_images.part000000000157/SHPRH.17_5212_10000_0.347_0.4799_0.5014.png
                gene_name: SHPRH
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
SHANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
SHANK2   10000 perm   2 sec   (4084 perm/sec)   p_kst 2.167000e-01   p_cons 8.770000e-02   p_joint 7.990000e-02

Joint ci ratio: 9.678552e-02	ci left: 7.211979e-02	ci right 7.950409e-02	k: 1515	n:20000
Cons ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
KS ci ratio: 5.338344e-02	ci left: 2.066497e-01	ci right 2.180341e-01	k: 4246	n:20000
SHANK2   20000 perm   5 sec   (3747 perm/sec)   p_kst 2.123000e-01   p_cons 8.675000e-02   p_joint 7.575000e-02

Outputting figure to mutsig2_images.part000000000157/SHANK2.15_5536_20000_0.2123_0.08675_0.07575.png
                gene_name: SHANK2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.080 

Current progress: 6 percent done.
SHANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
KS ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
SHANK1   10000 perm   3 sec   (3911 perm/sec)   p_kst 5.007000e-01   p_cons 1.077000e-01   p_joint 3.013000e-01

Joint ci ratio: 4.861240e-02	ci left: 2.393493e-01	ci right 2.513248e-01	k: 4906	n:20000
Cons ci ratio: 8.039080e-02	ci left: 1.019626e-01	ci right 1.105523e-01	k: 2124	n:20000
KS ci ratio: 2.593093e-02	ci left: 5.263064e-01	ci right 5.401839e-01	k: 10665	n:20000
SHANK1   20000 perm   6 sec   (3598 perm/sec)   p_kst 5.332500e-01   p_cons 1.062000e-01   p_joint 2.453000e-01

Outputting figure to mutsig2_images.part000000000157/SHANK1.12_6578_20000_0.53325_0.1062_0.2453.png
                gene_name: SHANK1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
SIGLEC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
Cons ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
SIGLEC9   10000 perm   2 sec   (5042 perm/sec)   p_kst 1.514000e-01   p_cons 8.561000e-01   p_joint 2.973000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC9.11_1420_10000_0.1514_0.8561_0.2973.png
                gene_name: SIGLEC9
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 9 percent done.
SIPA1L1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
SIPA1L1   10000 perm   3 sec   (3926 perm/sec)   p_kst 3.120000e-02   p_cons 2.085000e-01   p_joint 2.340000e-02

Joint ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
Cons ci ratio: 4.970670e-02	ci left: 2.312688e-01	ci right 2.431077e-01	k: 4743	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
SIPA1L1   20000 perm   6 sec   (3562 perm/sec)   p_kst 3.125000e-02   p_cons 2.371500e-01   p_joint 6.665000e-02

Joint ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
Cons ci ratio: 4.072805e-02	ci left: 2.311048e-01	ci right 2.407464e-01	k: 7077	n:30000
KS ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
SIPA1L1   30000 perm   9 sec   (3449 perm/sec)   p_kst 3.160000e-02   p_cons 2.359000e-01   p_joint 4.016667e-02

Joint ci ratio: 7.602324e-02	ci left: 5.995072e-02	ci right 6.471306e-02	k: 2492	n:40000
Cons ci ratio: 3.544694e-02	ci left: 2.299822e-01	ci right 2.383065e-01	k: 9365	n:40000
KS ci ratio: 1.089023e-01	ci left: 2.966386e-02	ci right 3.310462e-02	k: 1254	n:40000
SIPA1L1   40000 perm   12 sec   (3366 perm/sec)   p_kst 3.135000e-02   p_cons 2.341250e-01   p_joint 6.230000e-02

Joint ci ratio: 6.685222e-02	ci left: 6.218504e-02	ci right 6.650571e-02	k: 3216	n:50000
Cons ci ratio: 3.162099e-02	ci left: 2.313686e-01	ci right 2.388222e-01	k: 11754	n:50000
KS ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
SIPA1L1   50000 perm   15 sec   (3311 perm/sec)   p_kst 3.144000e-02   p_cons 2.350800e-01   p_joint 6.432000e-02

Outputting figure to mutsig2_images.part000000000157/SIPA1L1.10_5499_50000_0.03144_0.23508_0.06432.png
                gene_name: SIPA1L1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 10 percent done.
SH3TC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058822e-02	ci left: 7.755997e-01	ci right 7.918347e-01	k: 7838	n:10000
Cons ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
KS ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
SH3TC2   10000 perm   2 sec   (4542 perm/sec)   p_kst 8.921000e-01   p_cons 3.793000e-01   p_joint 7.838000e-01

Outputting figure to mutsig2_images.part000000000157/SH3TC2.10_3935_10000_0.8921_0.3793_0.7838.png
                gene_name: SH3TC2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 11 percent done.
SHROOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
Cons ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
KS ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
SHROOM3   10000 perm   2 sec   (4143 perm/sec)   p_kst 4.586000e-01   p_cons 8.052000e-01   p_joint 7.525000e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM3.10_6035_10000_0.4586_0.8052_0.7525.png
                gene_name: SHROOM3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 13 percent done.
SIGLEC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
SIGLEC10   10000 perm   2 sec   (4918 perm/sec)   p_kst 8.083000e-01   p_cons 1.922000e-01   p_joint 5.845000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC10.10_2138_10000_0.8083_0.1922_0.5845.png
                gene_name: SIGLEC10
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 14 percent done.
SIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
Cons ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
KS ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
SIM1   10000 perm   2 sec   (5214 perm/sec)   p_kst 5.350000e-02   p_cons 7.967000e-01   p_joint 1.071000e-01

Joint ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
Cons ci ratio: 1.394394e-02	ci left: 7.924181e-01	ci right 8.035952e-01	k: 15961	n:20000
KS ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
SIM1   20000 perm   4 sec   (4744 perm/sec)   p_kst 5.385000e-02   p_cons 7.980500e-01   p_joint 1.172500e-01

Joint ci ratio: 6.755823e-02	ci left: 9.748097e-02	ci right 1.043299e-01	k: 3026	n:30000
Cons ci ratio: 1.103022e-02	ci left: 8.035638e-01	ci right 8.125098e-01	k: 24242	n:30000
KS ci ratio: 9.239720e-02	ci left: 5.397893e-02	ci right 5.924068e-02	k: 1697	n:30000
SIM1   30000 perm   7 sec   (4530 perm/sec)   p_kst 5.656667e-02   p_cons 8.080667e-01   p_joint 1.008667e-01

Outputting figure to mutsig2_images.part000000000157/SIM1.10_2345_30000_0.056567_0.80807_0.10087.png
                gene_name: SIM1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 16 percent done.
SHROOM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.057533e-02	ci left: 6.121106e-01	ci right 6.312185e-01	k: 6217	n:10000
KS ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
SHROOM4   10000 perm   2 sec   (4924 perm/sec)   p_kst 6.407000e-01   p_cons 6.217000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHROOM4.8_4518_10000_0.6407_0.6217_1.png
                gene_name: SHROOM4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
SIGLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
Cons ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
SIGLEC12   10000 perm   2 sec   (5560 perm/sec)   p_kst 2.632000e-01   p_cons 9.619000e-01   p_joint 3.759000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC12.8_1893_10000_0.2632_0.9619_0.3759.png
                gene_name: SIGLEC12
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 19 percent done.
SIGLEC8
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
KS ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
SIGLEC8   10000 perm   2 sec   (5433 perm/sec)   p_kst 1.582000e-01   p_cons 3.982000e-01   p_joint 2.877000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC8.7_1528_10000_0.1582_0.3982_0.2877.png
                gene_name: SIGLEC8
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 20 percent done.
SIK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
SIK2   10000 perm   2 sec   (4564 perm/sec)   p_kst 2.481000e-01   p_cons 9.536000e-01   p_joint 4.760000e-01

Outputting figure to mutsig2_images.part000000000157/SIK2.8_2841_10000_0.2481_0.9536_0.476.png
                gene_name: SIK2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 21 percent done.
SIRPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
SIRPB1   10000 perm   2 sec   (4516 perm/sec)   p_kst 4.510000e-02   p_cons 1.760000e-02   p_joint 1.200000e-02

Joint ci ratio: 2.126892e-01	ci left: 1.492218e-02	ci right 1.852030e-02	k: 333	n:20000
Cons ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
KS ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
SIRPB1   20000 perm   5 sec   (4152 perm/sec)   p_kst 4.420000e-02   p_cons 1.845000e-02   p_joint 1.665000e-02

Joint ci ratio: 2.211240e-01	ci left: 9.219947e-03	ci right 1.154301e-02	k: 310	n:30000
Cons ci ratio: 1.609028e-01	ci left: 1.783724e-02	ci right 2.099014e-02	k: 581	n:30000
KS ci ratio: 1.056600e-01	ci left: 4.154431e-02	ci right 4.621121e-02	k: 1315	n:30000
SIRPB1   30000 perm   8 sec   (3983 perm/sec)   p_kst 4.383333e-02   p_cons 1.936667e-02   p_joint 1.033333e-02

Joint ci ratio: 1.697905e-01	ci left: 1.203263e-02	ci right 1.428886e-02	k: 525	n:40000
Cons ci ratio: 1.412136e-01	ci left: 1.756392e-02	ci right 2.025657e-02	k: 755	n:40000
KS ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
SIRPB1   40000 perm   10 sec   (3885 perm/sec)   p_kst 4.377500e-02   p_cons 1.887500e-02   p_joint 1.312500e-02

Joint ci ratio: 1.535910e-01	ci left: 1.187154e-02	ci right 1.386561e-02	k: 642	n:50000
Cons ci ratio: 1.254291e-01	ci left: 1.795699e-02	ci right 2.037929e-02	k: 957	n:50000
KS ci ratio: 8.238274e-02	ci left: 4.153256e-02	ci right 4.512071e-02	k: 2165	n:50000
SIRPB1   50000 perm   13 sec   (3797 perm/sec)   p_kst 4.330000e-02   p_cons 1.914000e-02   p_joint 1.284000e-02

Joint ci ratio: 1.535167e-01	ci left: 9.924221e-03	ci right 1.159028e-02	k: 644	n:60000
Cons ci ratio: 1.154047e-01	ci left: 1.777682e-02	ci right 1.997007e-02	k: 1131	n:60000
KS ci ratio: 7.594394e-02	ci left: 4.089971e-02	ci right 4.414473e-02	k: 2550	n:60000
SIRPB1   60000 perm   16 sec   (3730 perm/sec)   p_kst 4.250000e-02   p_cons 1.885000e-02   p_joint 1.073333e-02

Joint ci ratio: 1.350905e-01	ci left: 1.108223e-02	ci right 1.270147e-02	k: 831	n:70000
Cons ci ratio: 1.070370e-01	ci left: 1.779279e-02	ci right 1.981880e-02	k: 1315	n:70000
KS ci ratio: 7.056055e-02	ci left: 4.073657e-02	ci right 4.373010e-02	k: 2955	n:70000
SIRPB1   70000 perm   19 sec   (3660 perm/sec)   p_kst 4.221429e-02   p_cons 1.878571e-02   p_joint 1.187143e-02

Joint ci ratio: 1.331847e-01	ci left: 9.998587e-03	ci right 1.143723e-02	k: 856	n:80000
Cons ci ratio: 9.961892e-02	ci left: 1.804078e-02	ci right 1.994433e-02	k: 1518	n:80000
KS ci ratio: 6.582343e-02	ci left: 4.105098e-02	ci right 4.385733e-02	k: 3395	n:80000
SIRPB1   80000 perm   22 sec   (3604 perm/sec)   p_kst 4.243750e-02   p_cons 1.897500e-02   p_joint 1.070000e-02

Joint ci ratio: 9.361155e-02	ci left: 1.821573e-02	ci right 2.001546e-02	k: 1719	n:90000
Cons ci ratio: 9.456893e-02	ci left: 1.784668e-02	ci right 1.962898e-02	k: 1685	n:90000
KS ci ratio: 6.208867e-02	ci left: 4.109277e-02	ci right 4.373683e-02	k: 3816	n:90000
SIRPB1   90000 perm   25 sec   (3549 perm/sec)   p_kst 4.240000e-02   p_cons 1.872222e-02   p_joint 1.910000e-02

Outputting figure to mutsig2_images.part000000000157/SIRPB1.8_2354_90000_0.0424_0.018722_0.0191.png
                gene_name: SIRPB1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 23 percent done.
SIGLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
Cons ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
SIGLEC1   10000 perm   2 sec   (4285 perm/sec)   p_kst 4.935000e-01   p_cons 5.644000e-01   p_joint 6.871000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC1.7_5214_10000_0.4935_0.5644_0.6871.png
                gene_name: SIGLEC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 24 percent done.
SIGLEC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
Cons ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
SIGLEC5   10000 perm   2 sec   (5316 perm/sec)   p_kst 2.052000e-01   p_cons 3.825000e-01   p_joint 2.483000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC5.7_1692_10000_0.2052_0.3825_0.2483.png
                gene_name: SIGLEC5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 26 percent done.
SIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
KS ci ratio: 9.733309e-03	ci left: 9.372385e-01	ci right 9.465020e-01	k: 9420	n:10000
SIN3A   10000 perm   2 sec   (4609 perm/sec)   p_kst 9.420000e-01   p_cons 7.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIN3A.6_3902_10000_0.942_0.7175_1.png
                gene_name: SIN3A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SIPA1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
SIPA1L3   10000 perm   2 sec   (4305 perm/sec)   p_kst 6.300000e-02   p_cons 3.960000e-02   p_joint 5.860000e-02

Joint ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
Cons ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
KS ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
SIPA1L3   20000 perm   5 sec   (3950 perm/sec)   p_kst 5.825000e-02   p_cons 3.680000e-02   p_joint 4.615000e-02

Joint ci ratio: 1.439147e-01	ci left: 2.239414e-02	ci right 2.589885e-02	k: 723	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
SIPA1L3   30000 perm   8 sec   (3794 perm/sec)   p_kst 5.836667e-02   p_cons 3.653333e-02   p_joint 2.410000e-02

Joint ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
Cons ci ratio: 9.690556e-02	ci left: 3.739241e-02	ci right 4.122484e-02	k: 1571	n:40000
KS ci ratio: 7.809878e-02	ci left: 5.693136e-02	ci right 6.158288e-02	k: 2369	n:40000
SIPA1L3   40000 perm   11 sec   (3693 perm/sec)   p_kst 5.922500e-02   p_cons 3.927500e-02   p_joint 4.637500e-02

Outputting figure to mutsig2_images.part000000000157/SIPA1L3.6_5426_40000_0.059225_0.039275_0.046375.png
                gene_name: SIPA1L3
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 29 percent done.
SIRPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
Cons ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
SIRPA   10000 perm   2 sec   (5504 perm/sec)   p_kst 2.108000e-01   p_cons 1.142000e-01   p_joint 1.469000e-01

Joint ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
Cons ci ratio: 7.333518e-02	ci left: 1.203971e-01	ci right 1.296122e-01	k: 2499	n:20000
KS ci ratio: 5.346336e-02	ci left: 2.061546e-01	ci right 2.175293e-01	k: 4236	n:20000
SIRPA   20000 perm   4 sec   (4918 perm/sec)   p_kst 2.118000e-01   p_cons 1.249500e-01   p_joint 1.187500e-01

Outputting figure to mutsig2_images.part000000000157/SIRPA.6_1547_20000_0.2118_0.12495_0.11875.png
                gene_name: SIRPA
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 30 percent done.
SHQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
KS ci ratio: 8.185320e-03	ci left: 9.541963e-01	ci right 9.621340e-01	k: 9583	n:10000
SHQ1   10000 perm   2 sec   (5391 perm/sec)   p_kst 9.583000e-01   p_cons 8.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHQ1.5_1778_10000_0.9583_0.8189_1.png
                gene_name: SHQ1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
SIGLEC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
KS ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
SIGLEC14   10000 perm   2 sec   (5859 perm/sec)   p_kst 2.710000e-02   p_cons 2.923000e-01   p_joint 3.010000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 4.341842e-02	ci left: 2.832205e-01	ci right 2.958408e-01	k: 5790	n:20000
KS ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
SIGLEC14   20000 perm   4 sec   (5297 perm/sec)   p_kst 2.770000e-02   p_cons 2.895000e-01   p_joint 3.410000e-02

Joint ci ratio: 7.597667e-02	ci left: 7.839518e-02	ci right 8.461949e-02	k: 2444	n:30000
Cons ci ratio: 3.683358e-02	ci left: 2.689916e-01	ci right 2.791189e-01	k: 8221	n:30000
KS ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
SIGLEC14   30000 perm   6 sec   (5062 perm/sec)   p_kst 2.746667e-02   p_cons 2.740333e-01   p_joint 8.146667e-02

Joint ci ratio: 9.221223e-02	ci left: 4.122835e-02	ci right 4.523830e-02	k: 1728	n:40000
Cons ci ratio: 3.192024e-02	ci left: 2.694094e-01	ci right 2.781735e-01	k: 10951	n:40000
KS ci ratio: 1.211026e-01	ci left: 2.397720e-02	ci right 2.709220e-02	k: 1020	n:40000
SIGLEC14   40000 perm   8 sec   (4894 perm/sec)   p_kst 2.550000e-02   p_cons 2.737750e-01   p_joint 4.320000e-02

Joint ci ratio: 9.027479e-02	ci left: 3.469712e-02	ci right 3.799699e-02	k: 1816	n:50000
Cons ci ratio: 2.854030e-02	ci left: 2.700142e-01	ci right 2.778521e-01	k: 13696	n:50000
KS ci ratio: 1.093441e-01	ci left: 2.368809e-02	ci right 2.644743e-02	k: 1252	n:50000
SIGLEC14   50000 perm   10 sec   (4775 perm/sec)   p_kst 2.504000e-02   p_cons 2.739200e-01   p_joint 3.632000e-02

Joint ci ratio: 8.353704e-02	ci left: 3.391925e-02	ci right 3.689257e-02	k: 2123	n:60000
Cons ci ratio: 2.614276e-02	ci left: 2.690065e-01	ci right 2.761489e-01	k: 16354	n:60000
KS ci ratio: 9.956619e-02	ci left: 2.392805e-02	ci right 2.645149e-02	k: 1510	n:60000
SIGLEC14   60000 perm   13 sec   (4670 perm/sec)   p_kst 2.516667e-02   p_cons 2.725667e-01   p_joint 3.538333e-02

Outputting figure to mutsig2_images.part000000000157/SIGLEC14.5_1219_60000_0.025167_0.27257_0.035383.png
                gene_name: SIGLEC14
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 33 percent done.
SIGLEC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
SIGLEC6   10000 perm   2 sec   (5564 perm/sec)   p_kst 3.170000e-02   p_cons 6.503000e-01   p_joint 9.870000e-02

Joint ci ratio: 7.506092e-02	ci left: 1.154776e-01	ci right 1.245332e-01	k: 2399	n:20000
Cons ci ratio: 2.035691e-02	ci left: 6.429415e-01	ci right 6.562149e-01	k: 12992	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
SIGLEC6   20000 perm   4 sec   (5006 perm/sec)   p_kst 3.115000e-02   p_cons 6.496000e-01   p_joint 1.199500e-01

Joint ci ratio: 6.779512e-02	ci left: 9.685722e-02	ci right 1.036871e-01	k: 3007	n:30000
Cons ci ratio: 1.676421e-02	ci left: 6.402570e-01	ci right 6.511147e-01	k: 19371	n:30000
KS ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
SIGLEC6   30000 perm   6 sec   (4791 perm/sec)   p_kst 3.260000e-02   p_cons 6.457000e-01   p_joint 1.002333e-01

Joint ci ratio: 6.475473e-02	ci left: 8.120089e-02	ci right 8.665969e-02	k: 3356	n:40000
Cons ci ratio: 1.460570e-02	ci left: 6.382319e-01	ci right 6.476474e-01	k: 25718	n:40000
KS ci ratio: 1.065580e-01	ci left: 3.097859e-02	ci right 3.448967e-02	k: 1308	n:40000
SIGLEC6   40000 perm   9 sec   (4642 perm/sec)   p_kst 3.270000e-02   p_cons 6.429500e-01   p_joint 8.390000e-02

Joint ci ratio: 5.913646e-02	ci left: 7.838616e-02	ci right 8.318264e-02	k: 4038	n:50000
Cons ci ratio: 1.306579e-02	ci left: 6.386619e-01	ci right 6.470815e-01	k: 32144	n:50000
KS ci ratio: 9.561868e-02	ci left: 3.096291e-02	ci right 3.409168e-02	k: 1625	n:50000
SIGLEC6   50000 perm   11 sec   (4539 perm/sec)   p_kst 3.250000e-02   p_cons 6.428800e-01   p_joint 8.076000e-02

Outputting figure to mutsig2_images.part000000000157/SIGLEC6.5_1427_50000_0.0325_0.64288_0.08076.png
                gene_name: SIGLEC6
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 34 percent done.
SIRPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
Cons ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
KS ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
SIRPG   10000 perm   2 sec   (5607 perm/sec)   p_kst 5.980000e-02   p_cons 1.650000e-01   p_joint 6.970000e-02

Joint ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
Cons ci ratio: 6.297228e-02	ci left: 1.571648e-01	ci right 1.674336e-01	k: 3245	n:20000
KS ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
SIRPG   20000 perm   4 sec   (5060 perm/sec)   p_kst 5.915000e-02   p_cons 1.622500e-01   p_joint 5.270000e-02

Joint ci ratio: 9.292039e-02	ci left: 5.339206e-02	ci right 5.862767e-02	k: 1679	n:30000
Cons ci ratio: 5.162590e-02	ci left: 1.570223e-01	ci right 1.653768e-01	k: 4835	n:30000
KS ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
SIRPG   30000 perm   6 sec   (4826 perm/sec)   p_kst 5.870000e-02   p_cons 1.611667e-01   p_joint 5.596667e-02

Outputting figure to mutsig2_images.part000000000157/SIRPG.5_1184_30000_0.0587_0.16117_0.055967.png
                gene_name: SIRPG
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.059 

Current progress: 36 percent done.
SIX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
Cons ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
KS ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
SIX2   10000 perm   2 sec   (5746 perm/sec)   p_kst 6.854000e-01   p_cons 1.958000e-01   p_joint 5.246000e-01

Outputting figure to mutsig2_images.part000000000157/SIX2.5_884_10000_0.6854_0.1958_0.5246.png
                gene_name: SIX2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 37 percent done.
SH3PXD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280476e-03	ci left: 9.424271e-01	ci right 9.513103e-01	k: 9470	n:10000
Cons ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
KS ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
SH3PXD2B   10000 perm   2 sec   (5345 perm/sec)   p_kst 7.218000e-01   p_cons 8.210000e-01   p_joint 9.470000e-01

Outputting figure to mutsig2_images.part000000000157/SH3PXD2B.4_2788_10000_0.7218_0.821_0.947.png
                gene_name: SH3PXD2B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 39 percent done.
SH3RF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
Cons ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
SH3RF1   10000 perm   2 sec   (5643 perm/sec)   p_kst 7.469000e-01   p_cons 3.770000e-02   p_joint 2.640000e-01

Joint ci ratio: 5.435154e-02	ci left: 2.007595e-01	ci right 2.120260e-01	k: 4127	n:20000
Cons ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
KS ci ratio: 1.673533e-02	ci left: 7.266592e-01	ci right 7.389730e-01	k: 14657	n:20000
SH3RF1   20000 perm   4 sec   (4996 perm/sec)   p_kst 7.328500e-01   p_cons 3.650000e-02   p_joint 2.063500e-01

Joint ci ratio: 4.112358e-02	ci left: 2.276631e-01	ci right 2.372554e-01	k: 6973	n:30000
Cons ci ratio: 1.181383e-01	ci left: 3.330500e-02	ci right 3.751892e-02	k: 1061	n:30000
KS ci ratio: 1.364522e-02	ci left: 7.283572e-01	ci right 7.383975e-01	k: 22002	n:30000
SH3RF1   30000 perm   6 sec   (4777 perm/sec)   p_kst 7.334000e-01   p_cons 3.536667e-02   p_joint 2.324333e-01

Joint ci ratio: 3.517241e-02	ci left: 2.327649e-01	ci right 2.411234e-01	k: 9477	n:40000
Cons ci ratio: 1.015699e-01	ci left: 3.407370e-02	ci right 3.774407e-02	k: 1435	n:40000
KS ci ratio: 1.174841e-02	ci left: 7.313240e-01	ci right 7.399917e-01	k: 29427	n:40000
SH3RF1   40000 perm   9 sec   (4650 perm/sec)   p_kst 7.356750e-01   p_cons 3.587500e-02   p_joint 2.369250e-01

Joint ci ratio: 3.121495e-02	ci left: 2.360230e-01	ci right 2.435272e-01	k: 11988	n:50000
Cons ci ratio: 9.121666e-02	ci left: 3.399289e-02	ci right 3.726131e-02	k: 1780	n:50000
KS ci ratio: 1.053446e-02	ci left: 7.308067e-01	ci right 7.385661e-01	k: 36735	n:50000
SH3RF1   50000 perm   11 sec   (4521 perm/sec)   p_kst 7.347000e-01   p_cons 3.560000e-02   p_joint 2.397600e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF1.4_2711_50000_0.7347_0.0356_0.23976.png
                gene_name: SH3RF1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 40 percent done.
SH3TC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.415377e-02	ci left: 7.159319e-01	ci right 7.335370e-01	k: 7248	n:10000
Cons ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
KS ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
SH3TC1   10000 perm   2 sec   (4918 perm/sec)   p_kst 5.328000e-01   p_cons 8.399000e-01   p_joint 7.248000e-01

Outputting figure to mutsig2_images.part000000000157/SH3TC1.4_4079_10000_0.5328_0.8399_0.7248.png
                gene_name: SH3TC1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 41 percent done.
SHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
SHC3   10000 perm   2 sec   (5691 perm/sec)   p_kst 3.460000e-02   p_cons 5.940000e-02   p_joint 3.300000e-02

Joint ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
Cons ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
KS ci ratio: 1.525718e-01	ci left: 2.950774e-02	ci right 3.442957e-02	k: 638	n:20000
SHC3   20000 perm   4 sec   (5056 perm/sec)   p_kst 3.190000e-02   p_cons 5.950000e-02   p_joint 7.350000e-03

Joint ci ratio: 1.763658e-01	ci left: 1.476989e-02	ci right 1.765824e-02	k: 485	n:30000
Cons ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
KS ci ratio: 1.232858e-01	ci left: 3.058681e-02	ci right 3.463770e-02	k: 977	n:30000
SHC3   30000 perm   6 sec   (4846 perm/sec)   p_kst 3.256667e-02   p_cons 6.026667e-02   p_joint 1.616667e-02

Joint ci ratio: 1.731574e-01	ci left: 1.155385e-02	ci right 1.376774e-02	k: 505	n:40000
Cons ci ratio: 7.688196e-02	ci left: 5.867404e-02	ci right 6.338994e-02	k: 2440	n:40000
KS ci ratio: 1.043530e-01	ci left: 3.229412e-02	ci right 3.587394e-02	k: 1362	n:40000
SHC3   40000 perm   9 sec   (4706 perm/sec)   p_kst 3.405000e-02   p_cons 6.100000e-02   p_joint 1.262500e-02

Joint ci ratio: 1.229025e-01	ci left: 1.871321e-02	ci right 2.118297e-02	k: 996	n:50000
Cons ci ratio: 6.864874e-02	ci left: 5.911452e-02	ci right 6.333660e-02	k: 3060	n:50000
KS ci ratio: 9.327260e-02	ci left: 3.252633e-02	ci right 3.572806e-02	k: 1705	n:50000
SHC3   50000 perm   11 sec   (4581 perm/sec)   p_kst 3.410000e-02   p_cons 6.120000e-02   p_joint 1.992000e-02

Joint ci ratio: 1.206722e-01	ci left: 1.623943e-02	ci right 1.834097e-02	k: 1036	n:60000
Cons ci ratio: 6.038969e-02	ci left: 6.363168e-02	ci right 6.761046e-02	k: 3936	n:60000
KS ci ratio: 8.556226e-02	ci left: 3.235194e-02	ci right 3.526004e-02	k: 2027	n:60000
SHC3   60000 perm   13 sec   (4482 perm/sec)   p_kst 3.378333e-02   p_cons 6.560000e-02   p_joint 1.726667e-02

Joint ci ratio: 1.387660e-01	ci left: 1.048876e-02	ci right 1.206643e-02	k: 788	n:70000
Cons ci ratio: 5.582662e-02	ci left: 6.396011e-02	ci right 6.764741e-02	k: 4605	n:70000
KS ci ratio: 7.885388e-02	ci left: 3.275374e-02	ci right 3.545649e-02	k: 2386	n:70000
SHC3   70000 perm   16 sec   (4392 perm/sec)   p_kst 3.408571e-02   p_cons 6.578571e-02   p_joint 1.125714e-02

Joint ci ratio: 1.305167e-01	ci left: 1.042180e-02	ci right 1.188897e-02	k: 891	n:80000
Cons ci ratio: 5.225827e-02	ci left: 6.399268e-02	ci right 6.743889e-02	k: 5256	n:80000
KS ci ratio: 7.355201e-02	ci left: 3.302494e-02	ci right 3.555898e-02	k: 2742	n:80000
SHC3   80000 perm   19 sec   (4312 perm/sec)   p_kst 3.427500e-02   p_cons 6.570000e-02   p_joint 1.113750e-02

Joint ci ratio: 9.529145e-02	ci left: 1.757538e-02	ci right 1.934474e-02	k: 1660	n:90000
Cons ci ratio: 4.927461e-02	ci left: 6.407883e-02	ci right 6.732701e-02	k: 5912	n:90000
KS ci ratio: 6.910100e-02	ci left: 3.332802e-02	ci right 3.572433e-02	k: 3106	n:90000
SHC3   90000 perm   21 sec   (4239 perm/sec)   p_kst 3.451111e-02   p_cons 6.568889e-02   p_joint 1.844444e-02

Outputting figure to mutsig2_images.part000000000157/SHC3.4_1833_90000_0.034511_0.065689_0.018444.png
                gene_name: SHC3
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 43 percent done.
SHC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
Cons ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
SHC4   10000 perm   2 sec   (5943 perm/sec)   p_kst 4.939000e-01   p_cons 4.479000e-01   p_joint 5.017000e-01

Outputting figure to mutsig2_images.part000000000157/SHC4.4_1941_10000_0.4939_0.4479_0.5017.png
                gene_name: SHC4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 44 percent done.
SHH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
Cons ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
KS ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
SHH   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.450000e-01   p_cons 7.130000e-02   p_joint 9.650000e-02

Joint ci ratio: 7.435849e-02	ci left: 1.174451e-01	ci right 1.265651e-01	k: 2439	n:20000
Cons ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
KS ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
SHH   20000 perm   4 sec   (5239 perm/sec)   p_kst 1.429500e-01   p_cons 6.425000e-02   p_joint 1.219500e-01

Joint ci ratio: 5.816241e-02	ci left: 1.276621e-01	ci right 1.353428e-01	k: 3944	n:30000
Cons ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
KS ci ratio: 5.545705e-02	ci left: 1.387931e-01	ci right 1.467429e-01	k: 4282	n:30000
SHH   30000 perm   6 sec   (4967 perm/sec)   p_kst 1.427333e-01   p_cons 6.946667e-02   p_joint 1.314667e-01

Outputting figure to mutsig2_images.part000000000157/SHH.4_1401_30000_0.14273_0.069467_0.13147.png
                gene_name: SHH
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 46 percent done.
SHISA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
Cons ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
KS ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
SHISA2   10000 perm   2 sec   (6516 perm/sec)   p_kst 1.551000e-01   p_cons 4.896000e-01   p_joint 2.845000e-01

Outputting figure to mutsig2_images.part000000000157/SHISA2.4_896_10000_0.1551_0.4896_0.2845.png
                gene_name: SHISA2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 47 percent done.
SHOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
SHOC2   10000 perm   2 sec   (5675 perm/sec)   p_kst 2.571000e-01   p_cons 9.821000e-01   p_joint 4.123000e-01

Outputting figure to mutsig2_images.part000000000157/SHOC2.4_1781_10000_0.2571_0.9821_0.4123.png
                gene_name: SHOC2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 49 percent done.
SHOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
Cons ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
KS ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
SHOX   10000 perm   2 sec   (6008 perm/sec)   p_kst 1.414000e-01   p_cons 7.058000e-01   p_joint 4.073000e-01

Outputting figure to mutsig2_images.part000000000157/SHOX.4_948_10000_0.1414_0.7058_0.4073.png
                gene_name: SHOX
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 50 percent done.
SHOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
Cons ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
KS ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
SHOX2   10000 perm   2 sec   (5864 perm/sec)   p_kst 4.289000e-01   p_cons 4.469000e-01   p_joint 6.048000e-01

Outputting figure to mutsig2_images.part000000000157/SHOX2.4_1092_10000_0.4289_0.4469_0.6048.png
                gene_name: SHOX2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 51 percent done.
SHROOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
Cons ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
KS ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
SHROOM2   10000 perm   2 sec   (4903 perm/sec)   p_kst 1.383000e-01   p_cons 7.333000e-01   p_joint 3.430000e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM2.4_4891_10000_0.1383_0.7333_0.343.png
                gene_name: SHROOM2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 53 percent done.
SIDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
Cons ci ratio: 7.936930e-03	ci left: 9.567051e-01	ci right 9.644236e-01	k: 9607	n:10000
KS ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
SIDT1   10000 perm   2 sec   (5337 perm/sec)   p_kst 2.484000e-01   p_cons 9.607000e-01   p_joint 4.207000e-01

Outputting figure to mutsig2_images.part000000000157/SIDT1.4_2584_10000_0.2484_0.9607_0.4207.png
                gene_name: SIDT1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 54 percent done.
SIGLEC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
Cons ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
KS ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
SIGLEC7   10000 perm   2 sec   (5864 perm/sec)   p_kst 7.566000e-01   p_cons 2.301000e-01   p_joint 6.067000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC7.4_1432_10000_0.7566_0.2301_0.6067.png
                gene_name: SIGLEC7
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 56 percent done.
SIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
SIK3   10000 perm   2 sec   (5229 perm/sec)   p_kst 6.209000e-01   p_cons 3.389000e-01   p_joint 6.956000e-01

Outputting figure to mutsig2_images.part000000000157/SIK3.4_3884_10000_0.6209_0.3389_0.6956.png
                gene_name: SIK3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 57 percent done.
SHANK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
Cons ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KS ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
SHANK3   10000 perm   2 sec   (4692 perm/sec)   p_kst 4.335000e-01   p_cons 1.340000e-02   p_joint 5.120000e-02

Joint ci ratio: 1.391770e-01	ci left: 3.548919e-02	ci right 4.084615e-02	k: 762	n:20000
Cons ci ratio: 2.330359e-01	ci left: 1.232340e-02	ci right 1.562013e-02	k: 278	n:20000
KS ci ratio: 3.156802e-02	ci left: 4.284136e-01	ci right 4.422053e-01	k: 8706	n:20000
SHANK3   20000 perm   5 sec   (4222 perm/sec)   p_kst 4.353000e-01   p_cons 1.390000e-02   p_joint 3.810000e-02

Joint ci ratio: 1.526791e-01	ci left: 1.985641e-02	ci right 2.317049e-02	k: 644	n:30000
Cons ci ratio: 1.874555e-01	ci left: 1.301884e-02	ci right 1.574306e-02	k: 430	n:30000
KS ci ratio: 2.583719e-02	ci left: 4.285147e-01	ci right 4.397648e-01	k: 13024	n:30000
SHANK3   30000 perm   7 sec   (4054 perm/sec)   p_kst 4.341333e-01   p_cons 1.433333e-02   p_joint 2.146667e-02

Joint ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
Cons ci ratio: 1.627253e-01	ci left: 1.313539e-02	ci right 1.548590e-02	k: 571	n:40000
KS ci ratio: 2.255258e-02	ci left: 4.254157e-01	ci right 4.351444e-01	k: 17211	n:40000
SHANK3   40000 perm   10 sec   (3927 perm/sec)   p_kst 4.302750e-01   p_cons 1.427500e-02   p_joint 3.150000e-02

Joint ci ratio: 1.000275e-01	ci left: 2.830744e-02	ci right 3.130748e-02	k: 1489	n:50000
Cons ci ratio: 1.455463e-01	ci left: 1.325834e-02	ci right 1.535860e-02	k: 714	n:50000
KS ci ratio: 2.022189e-02	ci left: 4.247159e-01	ci right 4.334123e-01	k: 21453	n:50000
SHANK3   50000 perm   13 sec   (3846 perm/sec)   p_kst 4.290600e-01   p_cons 1.428000e-02   p_joint 2.978000e-02

Joint ci ratio: 1.138762e-01	ci left: 1.826274e-02	ci right 2.048410e-02	k: 1161	n:60000
Cons ci ratio: 1.329438e-01	ci left: 1.333300e-02	ci right 1.524774e-02	k: 856	n:60000
KS ci ratio: 1.847303e-02	ci left: 4.247520e-01	ci right 4.326883e-01	k: 25723	n:60000
SHANK3   60000 perm   16 sec   (3764 perm/sec)   p_kst 4.287167e-01   p_cons 1.426667e-02   p_joint 1.935000e-02

Joint ci ratio: 1.074119e-01	ci left: 1.766761e-02	ci right 1.968685e-02	k: 1306	n:70000
Cons ci ratio: 1.235111e-01	ci left: 1.330887e-02	ci right 1.507460e-02	k: 992	n:70000
KS ci ratio: 1.712232e-02	ci left: 4.244875e-01	ci right 4.318327e-01	k: 29971	n:70000
SHANK3   70000 perm   19 sec   (3701 perm/sec)   p_kst 4.281571e-01   p_cons 1.417143e-02   p_joint 1.865714e-02

Joint ci ratio: 9.830757e-02	ci left: 1.852863e-02	ci right 2.045644e-02	k: 1558	n:80000
Cons ci ratio: 1.158898e-01	ci left: 1.328225e-02	ci right 1.492826e-02	k: 1127	n:80000
KS ci ratio: 1.603312e-02	ci left: 4.242181e-01	ci right 4.310871e-01	k: 34212	n:80000
SHANK3   80000 perm   22 sec   (3639 perm/sec)   p_kst 4.276500e-01   p_cons 1.408750e-02   p_joint 1.947500e-02

Joint ci ratio: 8.878540e-02	ci left: 2.025792e-02	ci right 2.215090e-02	k: 1907	n:90000
Cons ci ratio: 1.097013e-01	ci left: 1.322093e-02	ci right 1.476619e-02	k: 1258	n:90000
KS ci ratio: 1.512393e-02	ci left: 4.241648e-01	ci right 4.306398e-01	k: 38466	n:90000
SHANK3   90000 perm   25 sec   (3584 perm/sec)   p_kst 4.274000e-01   p_cons 1.397778e-02   p_joint 2.118889e-02

Joint ci ratio: 7.548457e-02	ci left: 2.526784e-02	ci right 2.725976e-02	k: 2625	n:100000
Cons ci ratio: 1.039923e-01	ci left: 1.328092e-02	ci right 1.474747e-02	k: 1400	n:100000
KS ci ratio: 1.432998e-02	ci left: 4.249404e-01	ci right 4.310837e-01	k: 42801	n:100000
SHANK3   100000 perm   28 sec   (3527 perm/sec)   p_kst 4.280100e-01   p_cons 1.400000e-02   p_joint 2.625000e-02

Joint ci ratio: 7.630962e-02	ci left: 2.253254e-02	ci right 2.432907e-02	k: 2576	n:110000
Cons ci ratio: 9.922139e-02	ci left: 1.329624e-02	ci right 1.469319e-02	k: 1538	n:110000
KS ci ratio: 1.367685e-02	ci left: 4.245920e-01	ci right 4.304482e-01	k: 47027	n:110000
SHANK3   110000 perm   32 sec   (3478 perm/sec)   p_kst 4.275182e-01   p_cons 1.398182e-02   p_joint 2.341818e-02

Outputting figure to mutsig2_images.part000000000157/SHANK3.3_5336_110000_0.42752_0.013982_0.023418.png
                gene_name: SHANK3
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 59 percent done.
SHBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
Cons ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
KS ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
SHBG   10000 perm   2 sec   (6133 perm/sec)   p_kst 2.631000e-01   p_cons 2.460000e-01   p_joint 2.949000e-01

Outputting figure to mutsig2_images.part000000000157/SHBG.3_1241_10000_0.2631_0.246_0.2949.png
                gene_name: SHBG
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 60 percent done.
SHCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
KS ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
SHCBP1   10000 perm   2 sec   (5767 perm/sec)   p_kst 4.200000e-03   p_cons 6.305000e-01   p_joint 3.850000e-02

Joint ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
Cons ci ratio: 2.036138e-02	ci left: 6.428411e-01	ci right 6.561154e-01	k: 12990	n:20000
KS ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
SHCBP1   20000 perm   4 sec   (5123 perm/sec)   p_kst 4.550000e-03   p_cons 6.495000e-01   p_joint 1.550000e-02

Joint ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
Cons ci ratio: 1.674956e-02	ci left: 6.406584e-01	ci right 6.515133e-01	k: 19383	n:30000
KS ci ratio: 3.258763e-01	ci left: 4.018883e-03	ci right 5.612681e-03	k: 143	n:30000
SHCBP1   30000 perm   6 sec   (4851 perm/sec)   p_kst 4.766667e-03   p_cons 6.461000e-01   p_joint 1.236667e-02

Joint ci ratio: 2.281657e-01	ci left: 6.489190e-03	ci right 8.183514e-03	k: 292	n:40000
Cons ci ratio: 1.452072e-02	ci left: 6.409146e-01	ci right 6.503143e-01	k: 25825	n:40000
KS ci ratio: 2.891075e-01	ci left: 3.914153e-03	ci right 5.259327e-03	k: 182	n:40000
SHCBP1   40000 perm   8 sec   (4711 perm/sec)   p_kst 4.550000e-03   p_cons 6.456250e-01   p_joint 7.300000e-03

Joint ci ratio: 1.400813e-01	ci left: 1.433888e-02	ci right 1.651791e-02	k: 770	n:50000
Cons ci ratio: 1.302314e-02	ci left: 6.401658e-01	ci right 6.485774e-01	k: 32219	n:50000
KS ci ratio: 2.752498e-01	ci left: 3.484334e-03	ci right 4.614445e-03	k: 201	n:50000
SHCBP1   50000 perm   11 sec   (4599 perm/sec)   p_kst 4.020000e-03   p_cons 6.443800e-01   p_joint 1.540000e-02

Joint ci ratio: 1.326302e-01	ci left: 1.339748e-02	ci right 1.531658e-02	k: 860	n:60000
Cons ci ratio: 1.186333e-02	ci left: 6.415067e-01	ci right 6.491792e-01	k: 38721	n:60000
KS ci ratio: 2.552092e-01	ci left: 3.417072e-03	ci right 4.431840e-03	k: 234	n:60000
SHCBP1   60000 perm   13 sec   (4497 perm/sec)   p_kst 3.900000e-03   p_cons 6.453500e-01   p_joint 1.433333e-02

Joint ci ratio: 1.365090e-01	ci left: 1.084754e-02	ci right 1.245047e-02	k: 814	n:70000
Cons ci ratio: 1.097870e-02	ci left: 6.419861e-01	ci right 6.490875e-01	k: 45188	n:70000
KS ci ratio: 2.367844e-01	ci left: 3.438357e-03	ci right 4.374932e-03	k: 272	n:70000
SHCBP1   70000 perm   16 sec   (4416 perm/sec)   p_kst 3.885714e-03   p_cons 6.455429e-01   p_joint 1.162857e-02

Joint ci ratio: 1.481534e-01	ci left: 8.031969e-03	ci right 9.329039e-03	k: 693	n:80000
Cons ci ratio: 1.026781e-02	ci left: 6.422990e-01	ci right 6.489405e-01	k: 51650	n:80000
KS ci ratio: 2.211363e-01	ci left: 3.479921e-03	ci right 4.356659e-03	k: 312	n:80000
SHCBP1   80000 perm   18 sec   (4328 perm/sec)   p_kst 3.900000e-03   p_cons 6.456250e-01   p_joint 8.662500e-03

Joint ci ratio: 1.126412e-01	ci left: 1.252934e-02	ci right 1.403561e-02	k: 1194	n:90000
Cons ci ratio: 9.688176e-03	ci left: 6.421308e-01	ci right 6.483932e-01	k: 58074	n:90000
KS ci ratio: 2.103339e-01	ci left: 3.440120e-03	ci right 4.259037e-03	k: 345	n:90000
SHCBP1   90000 perm   21 sec   (4254 perm/sec)   p_kst 3.833333e-03   p_cons 6.452667e-01   p_joint 1.326667e-02

Joint ci ratio: 7.804002e-02	ci left: 2.364873e-02	ci right 2.557898e-02	k: 2460	n:100000
Cons ci ratio: 9.202399e-03	ci left: 6.417245e-01	ci right 6.476671e-01	k: 64470	n:100000
KS ci ratio: 1.981085e-01	ci left: 3.513637e-03	ci right 4.295571e-03	k: 389	n:100000
SHCBP1   100000 perm   24 sec   (4181 perm/sec)   p_kst 3.890000e-03   p_cons 6.447000e-01   p_joint 2.460000e-02

Joint ci ratio: 8.032709e-02	ci left: 2.033900e-02	ci right 2.205001e-02	k: 2330	n:110000
Cons ci ratio: 8.777459e-03	ci left: 6.416903e-01	ci right 6.473566e-01	k: 70898	n:110000
KS ci ratio: 1.906823e-01	ci left: 3.462312e-03	ci right 4.200592e-03	k: 420	n:110000
SHCBP1   110000 perm   27 sec   (4117 perm/sec)   p_kst 3.818182e-03   p_cons 6.445273e-01   p_joint 2.118182e-02

Joint ci ratio: 8.874242e-02	ci left: 1.528947e-02	ci right 1.671739e-02	k: 1919	n:120000
Cons ci ratio: 8.409174e-03	ci left: 6.415170e-01	ci right 6.469427e-01	k: 77308	n:120000
KS ci ratio: 1.838289e-01	ci left: 3.427948e-03	ci right 4.129701e-03	k: 452	n:120000
SHCBP1   120000 perm   30 sec   (4049 perm/sec)   p_kst 3.766667e-03   p_cons 6.442333e-01   p_joint 1.599167e-02

Joint ci ratio: 1.121192e-01	ci left: 8.792818e-03	ci right 9.844628e-03	k: 1210	n:130000
Cons ci ratio: 8.344785e-03	ci left: 6.266447e-01	ci right 6.319034e-01	k: 81806	n:130000
KS ci ratio: 1.565479e-01	ci left: 4.424133e-03	ci right 5.182831e-03	k: 623	n:130000
SHCBP1   130000 perm   33 sec   (3989 perm/sec)   p_kst 4.792308e-03   p_cons 6.292769e-01   p_joint 9.307692e-03

Joint ci ratio: 9.625824e-02	ci left: 1.114328e-02	ci right 1.227708e-02	k: 1638	n:140000
Cons ci ratio: 8.045398e-03	ci left: 6.264991e-01	ci right 6.315670e-01	k: 88065	n:140000
KS ci ratio: 1.519940e-01	ci left: 4.369065e-03	ci right 5.094539e-03	k: 661	n:140000
SHCBP1   140000 perm   36 sec   (3926 perm/sec)   p_kst 4.721429e-03   p_cons 6.290357e-01   p_joint 1.170000e-02

Joint ci ratio: 9.990211e-02	ci left: 9.652155e-03	ci right 1.067358e-02	k: 1523	n:150000
Cons ci ratio: 7.771969e-03	ci left: 6.266230e-01	ci right 6.315187e-01	k: 94361	n:150000
KS ci ratio: 1.479217e-01	ci left: 4.315197e-03	ci right 5.010829e-03	k: 698	n:150000
SHCBP1   150000 perm   39 sec   (3865 perm/sec)   p_kst 4.653333e-03   p_cons 6.290733e-01   p_joint 1.015333e-02

Joint ci ratio: 8.670976e-02	ci left: 1.206530e-02	ci right 1.316497e-02	k: 2017	n:160000
Cons ci ratio: 7.524246e-03	ci left: 6.267590e-01	ci right 6.314989e-01	k: 100661	n:160000
KS ci ratio: 1.433792e-01	ci left: 4.316499e-03	ci right 4.989144e-03	k: 743	n:160000
SHCBP1   160000 perm   42 sec   (3802 perm/sec)   p_kst 4.643750e-03   p_cons 6.291313e-01   p_joint 1.260625e-02

Joint ci ratio: 9.247746e-02	ci left: 9.974902e-03	ci right 1.094778e-02	k: 1777	n:170000
Cons ci ratio: 7.303303e-03	ci left: 6.265925e-01	ci right 6.311913e-01	k: 106912	n:170000
KS ci ratio: 1.397660e-01	ci left: 4.283868e-03	ci right 4.933204e-03	k: 782	n:170000
SHCBP1   170000 perm   45 sec   (3749 perm/sec)   p_kst 4.600000e-03   p_cons 6.288941e-01   p_joint 1.045294e-02

Joint ci ratio: 9.134423e-02	ci left: 9.664923e-03	ci right 1.059540e-02	k: 1822	n:180000
Cons ci ratio: 7.093900e-03	ci left: 6.268970e-01	ci right 6.313655e-01	k: 113244	n:180000
KS ci ratio: 1.359979e-01	ci left: 4.281888e-03	ci right 4.912009e-03	k: 826	n:180000
SHCBP1   180000 perm   49 sec   (3694 perm/sec)   p_kst 4.588889e-03   p_cons 6.291333e-01   p_joint 1.012222e-02

Joint ci ratio: 9.074268e-02	ci left: 9.284743e-03	ci right 1.017242e-02	k: 1847	n:190000
Cons ci ratio: 6.900441e-03	ci left: 6.272448e-01	ci right 6.315933e-01	k: 119590	n:190000
KS ci ratio: 1.324426e-01	ci left: 4.285415e-03	ci right 4.898272e-03	k: 871	n:190000
SHCBP1   190000 perm   52 sec   (3640 perm/sec)   p_kst 4.584211e-03   p_cons 6.294211e-01   p_joint 9.721053e-03

Joint ci ratio: 9.847936e-02	ci left: 7.472751e-03	ci right 8.251615e-03	k: 1571	n:200000
Cons ci ratio: 6.723861e-03	ci left: 6.274292e-01	ci right 6.316671e-01	k: 125910	n:200000
KS ci ratio: 1.290111e-01	ci left: 4.298462e-03	ci right 4.896037e-03	k: 918	n:200000
SHCBP1   200000 perm   56 sec   (3592 perm/sec)   p_kst 4.590000e-03   p_cons 6.295500e-01   p_joint 7.855000e-03

Joint ci ratio: 8.763428e-02	ci left: 9.024294e-03	ci right 9.855998e-03	k: 1981	n:210000
Cons ci ratio: 6.556694e-03	ci left: 6.278451e-01	ci right 6.319799e-01	k: 132282	n:210000
KS ci ratio: 1.253777e-01	ci left: 4.342741e-03	ci right 4.928205e-03	k: 972	n:210000
SHCBP1   210000 perm   59 sec   (3545 perm/sec)   p_kst 4.628571e-03   p_cons 6.299143e-01   p_joint 9.433333e-03

Joint ci ratio: 8.858251e-02	ci left: 8.431728e-03	ci right 9.217659e-03	k: 1940	n:220000
Cons ci ratio: 6.407954e-03	ci left: 6.277465e-01	ci right 6.317865e-01	k: 138549	n:220000
KS ci ratio: 1.226361e-01	ci left: 4.339139e-03	ci right 4.910397e-03	k: 1016	n:220000
SHCBP1   220000 perm   63 sec   (3500 perm/sec)   p_kst 4.618182e-03   p_cons 6.297682e-01   p_joint 8.818182e-03

Joint ci ratio: 6.422438e-02	ci left: 1.542695e-02	ci right 1.645486e-02	k: 3665	n:230000
Cons ci ratio: 6.274216e-03	ci left: 6.272614e-01	ci right 6.312136e-01	k: 144725	n:230000
KS ci ratio: 1.204668e-01	ci left: 4.306454e-03	ci right 4.862666e-03	k: 1053	n:230000
SHCBP1   230000 perm   67 sec   (3454 perm/sec)   p_kst 4.578261e-03   p_cons 6.292391e-01   p_joint 1.593478e-02

Joint ci ratio: 6.975544e-02	ci left: 1.253424e-02	ci right 1.344424e-02	k: 3116	n:240000
Cons ci ratio: 6.142519e-03	ci left: 6.272723e-01	ci right 6.311413e-01	k: 151010	n:240000
KS ci ratio: 1.184086e-01	ci left: 4.276576e-03	ci right 4.818830e-03	k: 1090	n:240000
SHCBP1   240000 perm   70 sec   (3408 perm/sec)   p_kst 4.541667e-03   p_cons 6.292083e-01   p_joint 1.298333e-02

Joint ci ratio: 6.873184e-02	ci left: 1.240233e-02	ci right 1.328901e-02	k: 3210	n:250000
Cons ci ratio: 6.018420e-03	ci left: 6.273111e-01	ci right 6.311019e-01	k: 157302	n:250000
KS ci ratio: 1.165043e-01	ci left: 4.245278e-03	ci right 4.774311e-03	k: 1126	n:250000
SHCBP1   250000 perm   74 sec   (3364 perm/sec)   p_kst 4.504000e-03   p_cons 6.292080e-01   p_joint 1.284000e-02

Joint ci ratio: 7.157846e-02	ci left: 1.099547e-02	ci right 1.181548e-02	k: 2964	n:260000
Cons ci ratio: 5.902232e-03	ci left: 6.272938e-01	ci right 6.310110e-01	k: 163580	n:260000
KS ci ratio: 1.143930e-01	ci left: 4.238871e-03	ci right 4.756886e-03	k: 1168	n:260000
SHCBP1   260000 perm   78 sec   (3322 perm/sec)   p_kst 4.492308e-03   p_cons 6.291538e-01   p_joint 1.140000e-02

Joint ci ratio: 7.641736e-02	ci left: 9.282859e-03	ci right 1.002402e-02	k: 2605	n:270000
Cons ci ratio: 5.791236e-03	ci left: 6.273823e-01	ci right 6.310298e-01	k: 169886	n:270000
KS ci ratio: 1.128143e-01	ci left: 4.200620e-03	ci right 4.706404e-03	k: 1201	n:270000
SHCBP1   270000 perm   82 sec   (3279 perm/sec)   p_kst 4.448148e-03   p_cons 6.292074e-01   p_joint 9.648148e-03

Joint ci ratio: 8.115244e-02	ci left: 7.928770e-03	ci right 8.602896e-03	k: 2313	n:280000
Cons ci ratio: 5.689061e-03	ci left: 6.272362e-01	ci right 6.308183e-01	k: 176128	n:280000
KS ci ratio: 1.110736e-01	ci left: 4.182510e-03	ci right 4.677834e-03	k: 1239	n:280000
SHCBP1   280000 perm   86 sec   (3238 perm/sec)   p_kst 4.425000e-03   p_cons 6.290286e-01   p_joint 8.260714e-03

Joint ci ratio: 8.069091e-02	ci left: 7.746554e-03	ci right 8.401265e-03	k: 2340	n:290000
Cons ci ratio: 5.589920e-03	ci left: 6.272837e-01	ci right 6.308034e-01	k: 182423	n:290000
KS ci ratio: 1.093251e-01	ci left: 4.172413e-03	ci right 4.658262e-03	k: 1279	n:290000
SHCBP1   290000 perm   91 sec   (3196 perm/sec)   p_kst 4.410345e-03   p_cons 6.290448e-01   p_joint 8.068966e-03

Joint ci ratio: 7.936315e-02	ci left: 7.746399e-03	ci right 8.389825e-03	k: 2419	n:300000
Cons ci ratio: 5.496297e-03	ci left: 6.272852e-01	ci right 6.307457e-01	k: 188705	n:300000
KS ci ratio: 1.076157e-01	ci left: 4.166291e-03	ci right 4.643361e-03	k: 1320	n:300000
SHCBP1   300000 perm   95 sec   (3158 perm/sec)   p_kst 4.400000e-03   p_cons 6.290167e-01   p_joint 8.063333e-03

Joint ci ratio: 7.987407e-02	ci left: 7.401615e-03	ci right 8.020544e-03	k: 2389	n:310000
Cons ci ratio: 5.405806e-03	ci left: 6.274097e-01	ci right 6.308137e-01	k: 195025	n:310000
KS ci ratio: 1.058281e-01	ci left: 4.173182e-03	ci right 4.642609e-03	k: 1365	n:310000
SHCBP1   310000 perm   99 sec   (3122 perm/sec)   p_kst 4.403226e-03   p_cons 6.291129e-01   p_joint 7.706452e-03

Joint ci ratio: 7.873033e-02	ci left: 7.384724e-03	ci right 7.992993e-03	k: 2459	n:320000
Cons ci ratio: 5.321352e-03	ci left: 6.273767e-01	ci right 6.307272e-01	k: 201297	n:320000
KS ci ratio: 1.039788e-01	ci left: 4.191879e-03	ci right 4.654666e-03	k: 1414	n:320000
SHCBP1   320000 perm   104 sec   (3085 perm/sec)   p_kst 4.418750e-03   p_cons 6.290531e-01   p_joint 7.684375e-03

Joint ci ratio: 7.749557e-02	ci left: 7.395663e-03	ci right 7.994848e-03	k: 2538	n:330000
Cons ci ratio: 5.239920e-03	ci left: 6.274189e-01	ci right 6.307182e-01	k: 207593	n:330000
KS ci ratio: 1.021881e-01	ci left: 4.212464e-03	ci right 4.669033e-03	k: 1464	n:330000
SHCBP1   330000 perm   108 sec   (3049 perm/sec)   p_kst 4.436364e-03   p_cons 6.290697e-01   p_joint 7.690909e-03

Joint ci ratio: 7.224305e-02	ci left: 8.275020e-03	ci right 8.898105e-03	k: 2918	n:340000
Cons ci ratio: 5.162538e-03	ci left: 6.274208e-01	ci right 6.306711e-01	k: 213876	n:340000
KS ci ratio: 1.005870e-01	ci left: 4.223299e-03	ci right 4.673447e-03	k: 1511	n:340000
SHCBP1   340000 perm   113 sec   (3012 perm/sec)   p_kst 4.444118e-03   p_cons 6.290471e-01   p_joint 8.582353e-03

Joint ci ratio: 7.109446e-02	ci left: 8.305160e-03	ci right 8.920161e-03	k: 3013	n:350000
Cons ci ratio: 5.088517e-03	ci left: 6.274200e-01	ci right 6.306236e-01	k: 220158	n:350000
KS ci ratio: 9.934724e-02	ci left: 4.208488e-03	ci right 4.651207e-03	k: 1549	n:350000
SHCBP1   350000 perm   117 sec   (2980 perm/sec)   p_kst 4.425714e-03   p_cons 6.290229e-01   p_joint 8.608571e-03

Outputting figure to mutsig2_images.part000000000157/SHCBP1.3_2071_350000_0.0044257_0.62902_0.0086086.png
                gene_name: SHCBP1
               theta_stop: 0.099 
                    nperm: 350000 
                     p_ks: 0.0044 
        ci_ks_bounds_left: 0.0042 
       ci_ks_bounds_right: 0.0047 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0089 

Current progress: 61 percent done.
SHF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
Cons ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
KS ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
SHF   10000 perm   2 sec   (6130 perm/sec)   p_kst 4.676000e-01   p_cons 3.122000e-01   p_joint 9.086000e-01

Outputting figure to mutsig2_images.part000000000157/SHF.3_1300_10000_0.4676_0.3122_0.9086.png
                gene_name: SHF
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 63 percent done.
SIAH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
SIAH3   10000 perm   2 sec   (6441 perm/sec)   p_kst 1.872000e-01   p_cons 3.496000e-01   p_joint 1.740000e-01

Outputting figure to mutsig2_images.part000000000157/SIAH3.3_818_10000_0.1872_0.3496_0.174.png
                gene_name: SIAH3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
SIRPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972923e-02	ci left: 7.898932e-01	ci right 8.057329e-01	k: 7979	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
SIRPB2   10000 perm   2 sec   (6495 perm/sec)   p_kst 4.543000e-01   p_cons 4.379000e-01   p_joint 7.979000e-01

Outputting figure to mutsig2_images.part000000000157/SIRPB2.3_1049_10000_0.4543_0.4379_0.7979.png
                gene_name: SIRPB2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 66 percent done.
SIRT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
Cons ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
KS ci ratio: 1.316798e-01	ci left: 7.601602e-02	ci right 8.682930e-02	k: 813	n:10000
SIRT7   10000 perm   2 sec   (6303 perm/sec)   p_kst 8.130000e-02   p_cons 6.951000e-01   p_joint 1.278000e-01

Joint ci ratio: 6.756650e-02	ci left: 1.391612e-01	ci right 1.489425e-01	k: 2880	n:20000
Cons ci ratio: 1.814990e-02	ci left: 6.934947e-01	ci right 7.062472e-01	k: 13998	n:20000
KS ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
SIRT7   20000 perm   4 sec   (5552 perm/sec)   p_kst 8.060000e-02   p_cons 6.999000e-01   p_joint 1.440000e-01

Outputting figure to mutsig2_images.part000000000157/SIRT7.3_1243_20000_0.0806_0.6999_0.144.png
                gene_name: SIRT7
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 67 percent done.
SH3RF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
SH3RF2   10000 perm   2 sec   (5998 perm/sec)   p_kst 2.483000e-01   p_cons 2.120000e-02   p_joint 1.966000e-01

Joint ci ratio: 4.727213e-02	ci left: 2.497640e-01	ci right 2.619071e-01	k: 5116	n:20000
Cons ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
KS ci ratio: 4.833829e-02	ci left: 2.414319e-01	ci right 2.534416e-01	k: 4948	n:20000
SH3RF2   20000 perm   4 sec   (5308 perm/sec)   p_kst 2.474000e-01   p_cons 2.010000e-02   p_joint 2.558000e-01

Joint ci ratio: 4.768157e-02	ci left: 1.794643e-01	ci right 1.882637e-01	k: 5515	n:30000
Cons ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
KS ci ratio: 3.948760e-02	ci left: 2.423596e-01	ci right 2.521560e-01	k: 7417	n:30000
SH3RF2   30000 perm   6 sec   (5042 perm/sec)   p_kst 2.472333e-01   p_cons 2.000000e-02   p_joint 1.838333e-01

Joint ci ratio: 3.518701e-02	ci left: 2.326158e-01	ci right 2.409725e-01	k: 9471	n:40000
Cons ci ratio: 1.363314e-01	ci left: 1.886790e-02	ci right 2.165236e-02	k: 809	n:40000
KS ci ratio: 3.418736e-02	ci left: 2.431276e-01	ci right 2.516091e-01	k: 9894	n:40000
SH3RF2   40000 perm   8 sec   (4890 perm/sec)   p_kst 2.473500e-01   p_cons 2.022500e-02   p_joint 2.367750e-01

Joint ci ratio: 4.201842e-02	ci left: 1.451359e-01	ci right 1.513850e-01	k: 7412	n:50000
Cons ci ratio: 1.207573e-01	ci left: 1.939228e-02	ci right 2.190381e-02	k: 1031	n:50000
KS ci ratio: 3.058594e-02	ci left: 2.434833e-01	ci right 2.510661e-01	k: 12363	n:50000
SH3RF2   50000 perm   11 sec   (4750 perm/sec)   p_kst 2.472600e-01   p_cons 2.062000e-02   p_joint 1.482400e-01

Joint ci ratio: 2.793203e-02	ci left: 2.436693e-01	ci right 2.505885e-01	k: 14827	n:60000
Cons ci ratio: 1.098471e-01	ci left: 1.964052e-02	ci right 2.193949e-02	k: 1246	n:60000
KS ci ratio: 2.792578e-02	ci left: 2.437522e-01	ci right 2.506722e-01	k: 14832	n:60000
SH3RF2   60000 perm   13 sec   (4648 perm/sec)   p_kst 2.472000e-01   p_cons 2.076667e-02   p_joint 2.471167e-01

Joint ci ratio: 2.677356e-02	ci left: 2.312942e-01	ci right 2.375850e-01	k: 16410	n:70000
Cons ci ratio: 1.012320e-01	ci left: 1.990877e-02	ci right 2.204548e-02	k: 1467	n:70000
KS ci ratio: 2.584252e-02	ci left: 2.441784e-01	ci right 2.505854e-01	k: 17316	n:70000
SH3RF2   70000 perm   15 sec   (4555 perm/sec)   p_kst 2.473714e-01   p_cons 2.095714e-02   p_joint 2.344286e-01

Joint ci ratio: 2.610277e-02	ci left: 2.170339e-01	ci right 2.227864e-01	k: 17592	n:80000
Cons ci ratio: 9.526723e-02	ci left: 1.973676e-02	ci right 2.172321e-02	k: 1657	n:80000
KS ci ratio: 2.414499e-02	ci left: 2.448237e-01	ci right 2.508196e-01	k: 19825	n:80000
SH3RF2   80000 perm   18 sec   (4450 perm/sec)   p_kst 2.478125e-01   p_cons 2.071250e-02   p_joint 2.199000e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF2.2_2226_80000_0.24781_0.020712_0.2199.png
                gene_name: SH3RF2
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
SH3RF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 6.282798e-02	ci left: 2.713139e-01	ci right 2.890143e-01	k: 2801	n:10000
SH3RF3   10000 perm   2 sec   (6301 perm/sec)   p_kst 2.801000e-01   p_cons 3.510000e-02   p_joint 1.621000e-01

Joint ci ratio: 4.241641e-02	ci left: 2.928584e-01	ci right 3.056000e-01	k: 5984	n:20000
Cons ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
KS ci ratio: 4.411996e-02	ci left: 2.767144e-01	ci right 2.892488e-01	k: 5659	n:20000
SH3RF3   20000 perm   4 sec   (5441 perm/sec)   p_kst 2.829500e-01   p_cons 3.770000e-02   p_joint 2.992000e-01

Joint ci ratio: 3.597953e-02	ci left: 2.783713e-01	ci right 2.886040e-01	k: 8504	n:30000
Cons ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
KS ci ratio: 3.610095e-02	ci left: 2.770122e-01	ci right 2.872300e-01	k: 8463	n:30000
SH3RF3   30000 perm   6 sec   (5172 perm/sec)   p_kst 2.821000e-01   p_cons 3.796667e-02   p_joint 2.834667e-01

Joint ci ratio: 4.078699e-02	ci left: 1.837597e-01	ci right 1.914357e-01	k: 7503	n:40000
Cons ci ratio: 1.029155e-01	ci left: 3.319594e-02	ci right 3.682198e-02	k: 1399	n:40000
KS ci ratio: 3.114580e-02	ci left: 2.792359e-01	ci right 2.880955e-01	k: 11346	n:40000
SH3RF3   40000 perm   8 sec   (4972 perm/sec)   p_kst 2.836500e-01   p_cons 3.497500e-02   p_joint 1.875750e-01

Joint ci ratio: 4.936229e-02	ci left: 1.092285e-01	ci right 1.147766e-01	k: 5599	n:50000
Cons ci ratio: 9.194178e-02	ci left: 3.346484e-02	ci right 3.670943e-02	k: 1753	n:50000
KS ci ratio: 2.779030e-02	ci left: 2.806873e-01	ci right 2.886177e-01	k: 14232	n:50000
SH3RF3   50000 perm   10 sec   (4840 perm/sec)   p_kst 2.846400e-01   p_cons 3.506000e-02   p_joint 1.119800e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF3.2_2353_50000_0.28464_0.03506_0.11198.png
                gene_name: SH3RF3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 70 percent done.
SHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
SHC1   10000 perm   2 sec   (6080 perm/sec)   p_kst 6.961000e-01   p_cons 2.550000e-02   p_joint 3.154000e-01

Joint ci ratio: 6.625540e-02	ci left: 1.439926e-01	ci right 1.539097e-01	k: 2978	n:20000
Cons ci ratio: 1.693159e-01	ci left: 2.388659e-02	ci right 2.835263e-02	k: 521	n:20000
KS ci ratio: 1.827526e-02	ci left: 6.905777e-01	ci right 7.033650e-01	k: 13940	n:20000
SHC1   20000 perm   4 sec   (5451 perm/sec)   p_kst 6.970000e-01   p_cons 2.605000e-02   p_joint 1.489000e-01

Joint ci ratio: 9.090286e-02	ci left: 5.570741e-02	ci right 6.104519e-02	k: 1750	n:30000
Cons ci ratio: 1.408546e-01	ci left: 2.339150e-02	ci right 2.696793e-02	k: 754	n:30000
KS ci ratio: 1.491712e-02	ci left: 6.918981e-01	ci right 7.023303e-01	k: 20914	n:30000
SHC1   30000 perm   6 sec   (5177 perm/sec)   p_kst 6.971333e-01   p_cons 2.513333e-02   p_joint 5.833333e-02

Joint ci ratio: 7.940699e-02	ci left: 5.514020e-02	ci right 5.972431e-02	k: 2296	n:40000
Cons ci ratio: 1.229057e-01	ci left: 2.327380e-02	ci right 2.634571e-02	k: 991	n:40000
KS ci ratio: 1.290286e-02	ci left: 6.931224e-01	ci right 7.021488e-01	k: 27906	n:40000
SHC1   40000 perm   8 sec   (5033 perm/sec)   p_kst 6.976500e-01   p_cons 2.477500e-02   p_joint 5.740000e-02

Joint ci ratio: 7.092244e-02	ci left: 5.553423e-02	ci right 5.963733e-02	k: 2878	n:50000
Cons ci ratio: 1.095235e-01	ci left: 2.361023e-02	ci right 2.636530e-02	k: 1248	n:50000
KS ci ratio: 1.157491e-02	ci left: 6.923483e-01	ci right 7.004289e-01	k: 34820	n:50000
SHC1   50000 perm   10 sec   (4922 perm/sec)   p_kst 6.964000e-01   p_cons 2.496000e-02   p_joint 5.756000e-02

Joint ci ratio: 4.105541e-02	ci left: 1.291854e-01	ci right 1.346169e-01	k: 7913	n:60000
Cons ci ratio: 9.909625e-02	ci left: 2.415573e-02	ci right 2.669046e-02	k: 1524	n:60000
KS ci ratio: 1.059516e-02	ci left: 6.915492e-01	ci right 6.989319e-01	k: 41715	n:60000
SHC1   60000 perm   12 sec   (4807 perm/sec)   p_kst 6.952500e-01   p_cons 2.540000e-02   p_joint 1.318833e-01

Outputting figure to mutsig2_images.part000000000157/SHC1.2_1803_60000_0.69525_0.0254_0.13188.png
                gene_name: SHC1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
SHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
SHD   10000 perm   2 sec   (6565 perm/sec)   p_kst 3.013000e-01   p_cons 3.700000e-03   p_joint 2.040000e-02

Joint ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
Cons ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
KS ci ratio: 4.271154e-02	ci left: 2.899766e-01	ci right 3.026827e-01	k: 5926	n:20000
SHD   20000 perm   3 sec   (5739 perm/sec)   p_kst 2.963000e-01   p_cons 3.750000e-03   p_joint 1.580000e-02

Joint ci ratio: 1.840202e-01	ci left: 1.352770e-02	ci right 1.630074e-02	k: 446	n:30000
Cons ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
KS ci ratio: 3.481682e-02	ci left: 2.918326e-01	ci right 3.022068e-01	k: 8910	n:30000
SHD   30000 perm   5 sec   (5483 perm/sec)   p_kst 2.970000e-01   p_cons 4.166667e-03   p_joint 1.486667e-02

Joint ci ratio: 1.719567e-01	ci left: 1.172137e-02	ci right 1.395018e-02	k: 512	n:40000
Cons ci ratio: 2.956716e-01	ci left: 3.728767e-03	ci right 5.044783e-03	k: 174	n:40000
KS ci ratio: 3.008801e-02	ci left: 2.934205e-01	ci right 3.024089e-01	k: 11916	n:40000
SHD   40000 perm   8 sec   (5316 perm/sec)   p_kst 2.979000e-01   p_cons 4.350000e-03   p_joint 1.280000e-02

Joint ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
Cons ci ratio: 2.686527e-01	ci left: 3.670745e-03	ci right 4.827978e-03	k: 211	n:50000
KS ci ratio: 2.688102e-02	ci left: 2.943713e-01	ci right 3.024121e-01	k: 14919	n:50000
SHD   50000 perm   10 sec   (5182 perm/sec)   p_kst 2.983800e-01   p_cons 4.220000e-03   p_joint 1.216000e-02

Joint ci ratio: 1.612787e-01	ci left: 8.963225e-03	ci right 1.055140e-02	k: 584	n:60000
Cons ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
KS ci ratio: 2.458686e-02	ci left: 2.939100e-01	ci right 3.012429e-01	k: 17854	n:60000
SHD   60000 perm   12 sec   (5073 perm/sec)   p_kst 2.975667e-01   p_cons 4.300000e-03   p_joint 9.733333e-03

Joint ci ratio: 1.517477e-01	ci left: 8.725900e-03	ci right 1.017234e-02	k: 660	n:70000
Cons ci ratio: 2.258342e-01	ci left: 3.801810e-03	ci right 4.782838e-03	k: 299	n:70000
KS ci ratio: 2.281120e-02	ci left: 2.933031e-01	ci right 3.000852e-01	k: 20768	n:70000
SHD   70000 perm   14 sec   (4953 perm/sec)   p_kst 2.966857e-01   p_cons 4.271429e-03   p_joint 9.428571e-03

Joint ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
Cons ci ratio: 2.121383e-01	ci left: 3.799180e-03	ci right 4.712347e-03	k: 339	n:80000
KS ci ratio: 2.134624e-02	ci left: 2.933613e-01	ci right 2.997035e-01	k: 23722	n:80000
SHD   80000 perm   16 sec   (4855 perm/sec)   p_kst 2.965250e-01   p_cons 4.237500e-03   p_joint 1.001250e-02

Joint ci ratio: 1.180116e-01	ci left: 1.139591e-02	ci right 1.283579e-02	k: 1089	n:90000
Cons ci ratio: 2.020047e-01	ci left: 3.745771e-03	ci right 4.597787e-03	k: 374	n:90000
KS ci ratio: 2.015031e-02	ci left: 2.930298e-01	ci right 2.990056e-01	k: 26641	n:90000
SHD   90000 perm   19 sec   (4769 perm/sec)   p_kst 2.960111e-01   p_cons 4.155556e-03   p_joint 1.210000e-02

Joint ci ratio: 1.177567e-01	ci left: 1.031421e-02	ci right 1.161439e-02	k: 1095	n:100000
Cons ci ratio: 1.908734e-01	ci left: 3.799085e-03	ci right 4.610087e-03	k: 419	n:100000
KS ci ratio: 1.910903e-02	ci left: 2.933412e-01	ci right 2.990107e-01	k: 29617	n:100000
SHD   100000 perm   21 sec   (4673 perm/sec)   p_kst 2.961700e-01   p_cons 4.190000e-03   p_joint 1.095000e-02

Joint ci ratio: 1.102421e-01	ci left: 1.073679e-02	ci right 1.199826e-02	k: 1249	n:110000
Cons ci ratio: 1.833911e-01	ci left: 3.756986e-03	ci right 4.524067e-03	k: 454	n:110000
KS ci ratio: 1.823517e-02	ci left: 2.931219e-01	ci right 2.985252e-01	k: 32540	n:110000
SHD   110000 perm   24 sec   (4588 perm/sec)   p_kst 2.958182e-01   p_cons 4.127273e-03   p_joint 1.135455e-02

Joint ci ratio: 1.061662e-01	ci left: 1.063659e-02	ci right 1.183720e-02	k: 1347	n:120000
Cons ci ratio: 1.769062e-01	ci left: 3.714455e-03	ci right 4.443166e-03	k: 488	n:120000
KS ci ratio: 1.745930e-02	ci left: 2.932268e-01	ci right 2.983997e-01	k: 35497	n:120000
SHD   120000 perm   27 sec   (4506 perm/sec)   p_kst 2.958083e-01   p_cons 4.066667e-03   p_joint 1.122500e-02

Joint ci ratio: 1.021192e-01	ci left: 1.063502e-02	ci right 1.178694e-02	k: 1456	n:130000
Cons ci ratio: 1.710638e-01	ci left: 3.678873e-03	ci right 4.374307e-03	k: 522	n:130000
KS ci ratio: 1.678804e-02	ci left: 2.929898e-01	ci right 2.979578e-01	k: 38411	n:130000
SHD   130000 perm   29 sec   (4435 perm/sec)   p_kst 2.954692e-01   p_cons 4.015385e-03   p_joint 1.120000e-02

Joint ci ratio: 9.787211e-02	ci left: 1.077380e-02	ci right 1.188943e-02	k: 1585	n:140000
Cons ci ratio: 1.637114e-01	ci left: 3.744605e-03	ci right 4.419046e-03	k: 570	n:140000
KS ci ratio: 1.617424e-02	ci left: 2.931605e-01	ci right 2.979479e-01	k: 41377	n:140000
SHD   140000 perm   32 sec   (4364 perm/sec)   p_kst 2.955500e-01   p_cons 4.071429e-03   p_joint 1.132143e-02

Joint ci ratio: 1.086287e-01	ci left: 8.138905e-03	ci right 9.080237e-03	k: 1290	n:150000
Cons ci ratio: 1.578737e-01	ci left: 3.770103e-03	ci right 4.422629e-03	k: 613	n:150000
KS ci ratio: 1.563721e-02	ci left: 2.929389e-01	ci right 2.975624e-01	k: 44287	n:150000
SHD   150000 perm   35 sec   (4298 perm/sec)   p_kst 2.952467e-01   p_cons 4.086667e-03   p_joint 8.600000e-03

Joint ci ratio: 9.123516e-02	ci left: 1.088557e-02	ci right 1.193225e-02	k: 1824	n:160000
Cons ci ratio: 1.535606e-01	ci left: 3.744694e-03	ci right 4.373486e-03	k: 648	n:160000
KS ci ratio: 1.513669e-02	ci left: 2.931215e-01	ci right 2.975984e-01	k: 47257	n:160000
SHD   160000 perm   38 sec   (4223 perm/sec)   p_kst 2.953562e-01   p_cons 4.050000e-03   p_joint 1.140000e-02

Joint ci ratio: 8.860506e-02	ci left: 1.087774e-02	ci right 1.189196e-02	k: 1934	n:170000
Cons ci ratio: 1.493636e-01	ci left: 3.733816e-03	ci right 4.342114e-03	k: 685	n:170000
KS ci ratio: 1.468156e-02	ci left: 2.932788e-01	ci right 2.976223e-01	k: 50226	n:170000
SHD   170000 perm   41 sec   (4154 perm/sec)   p_kst 2.954471e-01   p_cons 4.029412e-03   p_joint 1.137647e-02

Joint ci ratio: 8.633963e-02	ci left: 1.083312e-02	ci right 1.181605e-02	k: 2037	n:180000
Cons ci ratio: 1.451908e-01	ci left: 3.740416e-03	ci right 4.331289e-03	k: 725	n:180000
KS ci ratio: 1.427678e-02	ci left: 2.930823e-01	ci right 2.973021e-01	k: 53134	n:180000
SHD   180000 perm   44 sec   (4088 perm/sec)   p_kst 2.951889e-01   p_cons 4.027778e-03   p_joint 1.131667e-02

Joint ci ratio: 8.386395e-02	ci left: 1.089141e-02	ci right 1.184990e-02	k: 2159	n:190000
Cons ci ratio: 1.405227e-01	ci left: 3.792238e-03	ci right 4.370423e-03	k: 774	n:190000
KS ci ratio: 1.389651e-02	ci left: 2.931233e-01	ci right 2.972304e-01	k: 56083	n:190000
SHD   190000 perm   47 sec   (4023 perm/sec)   p_kst 2.951737e-01   p_cons 4.073684e-03   p_joint 1.136316e-02

Joint ci ratio: 8.133768e-02	ci left: 1.101282e-02	ci right 1.195142e-02	k: 2295	n:200000
Cons ci ratio: 1.367787e-01	ci left: 3.810171e-03	ci right 4.374352e-03	k: 817	n:200000
KS ci ratio: 1.353128e-02	ci left: 2.935857e-01	ci right 2.975903e-01	k: 59117	n:200000
SHD   200000 perm   51 sec   (3957 perm/sec)   p_kst 2.955850e-01   p_cons 4.085000e-03   p_joint 1.147500e-02

Joint ci ratio: 8.592200e-02	ci left: 9.392396e-03	ci right 1.024026e-02	k: 2060	n:210000
Cons ci ratio: 1.345003e-01	ci left: 3.757536e-03	ci right 4.303914e-03	k: 845	n:210000
KS ci ratio: 1.321831e-02	ci left: 2.932211e-01	ci right 2.971274e-01	k: 61986	n:210000
SHD   210000 perm   54 sec   (3893 perm/sec)   p_kst 2.951714e-01   p_cons 4.023810e-03   p_joint 9.809524e-03

Joint ci ratio: 8.352064e-02	ci left: 9.499389e-03	ci right 1.033178e-02	k: 2180	n:220000
Cons ci ratio: 1.314292e-01	ci left: 3.762510e-03	ci right 4.296143e-03	k: 885	n:220000
KS ci ratio: 1.291620e-02	ci left: 2.932082e-01	ci right 2.970245e-01	k: 64925	n:220000
SHD   220000 perm   57 sec   (3835 perm/sec)   p_kst 2.951136e-01   p_cons 4.022727e-03   p_joint 9.909091e-03

Joint ci ratio: 8.166918e-02	ci left: 9.512177e-03	ci right 1.032633e-02	k: 2280	n:230000
Cons ci ratio: 1.289092e-01	ci left: 3.746139e-03	ci right 4.266483e-03	k: 920	n:230000
KS ci ratio: 1.262295e-02	ci left: 2.935576e-01	ci right 2.972910e-01	k: 67947	n:230000
SHD   230000 perm   61 sec   (3777 perm/sec)   p_kst 2.954217e-01   p_cons 4.000000e-03   p_joint 9.913043e-03

Joint ci ratio: 7.378090e-02	ci left: 1.119589e-02	ci right 1.205763e-02	k: 2789	n:240000
Cons ci ratio: 1.260663e-01	ci left: 3.759470e-03	ci right 4.269290e-03	k: 962	n:240000
KS ci ratio: 1.235214e-02	ci left: 2.937665e-01	ci right 2.974218e-01	k: 70942	n:240000
SHD   240000 perm   64 sec   (3724 perm/sec)   p_kst 2.955917e-01   p_cons 4.008333e-03   p_joint 1.162083e-02

Joint ci ratio: 7.229338e-02	ci left: 1.120358e-02	ci right 1.204780e-02	k: 2905	n:250000
Cons ci ratio: 1.228524e-01	ci left: 3.806746e-03	ci right 4.308859e-03	k: 1013	n:250000
KS ci ratio: 1.209978e-02	ci left: 2.938995e-01	ci right 2.974812e-01	k: 73922	n:250000
SHD   250000 perm   68 sec   (3673 perm/sec)   p_kst 2.956880e-01   p_cons 4.052000e-03   p_joint 1.162000e-02

Joint ci ratio: 7.919793e-02	ci left: 8.964764e-03	ci right 9.707774e-03	k: 2426	n:260000
Cons ci ratio: 1.203270e-01	ci left: 3.820689e-03	ci right 4.313544e-03	k: 1056	n:260000
KS ci ratio: 1.187138e-02	ci left: 2.937043e-01	ci right 2.972156e-01	k: 76819	n:260000
SHD   260000 perm   72 sec   (3621 perm/sec)   p_kst 2.954577e-01   p_cons 4.061538e-03   p_joint 9.330769e-03

Joint ci ratio: 7.755219e-02	ci left: 9.010380e-03	ci right 9.740951e-03	k: 2530	n:270000
Cons ci ratio: 1.173635e-01	ci left: 3.873243e-03	ci right 4.359719e-03	k: 1110	n:270000
KS ci ratio: 1.165108e-02	ci left: 2.936795e-01	ci right 2.971249e-01	k: 79758	n:270000
SHD   270000 perm   76 sec   (3572 perm/sec)   p_kst 2.954000e-01   p_cons 4.111111e-03   p_joint 9.370370e-03

Joint ci ratio: 7.380281e-02	ci left: 9.606701e-03	ci right 1.034635e-02	k: 2792	n:280000
Cons ci ratio: 1.146085e-01	ci left: 3.922181e-03	ci right 4.402457e-03	k: 1164	n:280000
KS ci ratio: 1.144084e-02	ci left: 2.937212e-01	ci right 2.971045e-01	k: 82715	n:280000
SHD   280000 perm   79 sec   (3524 perm/sec)   p_kst 2.954107e-01   p_cons 4.157143e-03   p_joint 9.971429e-03

Joint ci ratio: 7.476751e-02	ci left: 9.038441e-03	ci right 9.743829e-03	k: 2722	n:290000
Cons ci ratio: 1.123633e-01	ci left: 3.944404e-03	ci right 4.417313e-03	k: 1211	n:290000
KS ci ratio: 1.123480e-02	ci left: 2.940118e-01	ci right 2.973371e-01	k: 85745	n:290000
SHD   290000 perm   83 sec   (3478 perm/sec)   p_kst 2.956724e-01   p_cons 4.175862e-03   p_joint 9.386207e-03

Joint ci ratio: 6.522488e-02	ci left: 1.150847e-02	ci right 1.228767e-02	k: 3568	n:300000
Cons ci ratio: 1.102012e-01	ci left: 3.968473e-03	ci right 4.434518e-03	k: 1259	n:300000
KS ci ratio: 1.104860e-02	ci left: 2.939408e-01	ci right 2.972098e-01	k: 88672	n:300000
SHD   300000 perm   87 sec   (3432 perm/sec)   p_kst 2.955733e-01   p_cons 4.196667e-03   p_joint 1.189333e-02

Joint ci ratio: 6.412876e-02	ci left: 1.152759e-02	ci right 1.229448e-02	k: 3691	n:310000
Cons ci ratio: 1.083256e-01	ci left: 3.978516e-03	ci right 4.437281e-03	k: 1303	n:310000
KS ci ratio: 1.086917e-02	ci left: 2.939586e-01	ci right 2.971743e-01	k: 91625	n:310000
SHD   310000 perm   92 sec   (3380 perm/sec)   p_kst 2.955645e-01   p_cons 4.203226e-03   p_joint 1.190645e-02

Joint ci ratio: 6.318677e-02	ci left: 1.150870e-02	ci right 1.226268e-02	k: 3802	n:320000
Cons ci ratio: 1.069418e-01	ci left: 3.957574e-03	ci right 4.407728e-03	k: 1337	n:320000
KS ci ratio: 1.069283e-02	ci left: 2.941846e-01	ci right 2.973503e-01	k: 94645	n:320000
SHD   320000 perm   96 sec   (3341 perm/sec)   p_kst 2.957656e-01   p_cons 4.178125e-03   p_joint 1.188125e-02

Joint ci ratio: 5.821994e-02	ci left: 1.315681e-02	ci right 1.394873e-02	k: 4471	n:330000
Cons ci ratio: 1.050727e-01	ci left: 3.979248e-03	ci right 4.423467e-03	k: 1385	n:330000
KS ci ratio: 1.053636e-02	ci left: 2.939405e-01	ci right 2.970570e-01	k: 97514	n:330000
SHD   330000 perm   100 sec   (3298 perm/sec)   p_kst 2.954970e-01   p_cons 4.196970e-03   p_joint 1.354848e-02

Joint ci ratio: 5.724109e-02	ci left: 1.321626e-02	ci right 1.399794e-02	k: 4625	n:340000
Cons ci ratio: 1.034796e-01	ci left: 3.985384e-03	ci right 4.423132e-03	k: 1428	n:340000
KS ci ratio: 1.038129e-02	ci left: 2.939226e-01	ci right 2.969927e-01	k: 100455	n:340000
SHD   340000 perm   104 sec   (3258 perm/sec)   p_kst 2.954559e-01   p_cons 4.200000e-03   p_joint 1.360294e-02

Joint ci ratio: 5.624442e-02	ci left: 1.330341e-02	ci right 1.407610e-02	k: 4790	n:350000
Cons ci ratio: 1.016797e-01	ci left: 4.013495e-03	ci right 4.446205e-03	k: 1479	n:350000
KS ci ratio: 1.022753e-02	ci left: 2.941228e-01	ci right 2.971492e-01	k: 103472	n:350000
SHD   350000 perm   109 sec   (3219 perm/sec)   p_kst 2.956343e-01   p_cons 4.225714e-03   p_joint 1.368571e-02

Joint ci ratio: 5.541720e-02	ci left: 1.332829e-02	ci right 1.409068e-02	k: 4934	n:360000
Cons ci ratio: 1.002670e-01	ci left: 4.015730e-03	ci right 4.442311e-03	k: 1521	n:360000
KS ci ratio: 1.008168e-02	ci left: 2.942594e-01	ci right 2.972438e-01	k: 106470	n:360000
SHD   360000 perm   113 sec   (3179 perm/sec)   p_kst 2.957500e-01   p_cons 4.225000e-03   p_joint 1.370556e-02

Joint ci ratio: 5.474030e-02	ci left: 1.329591e-02	ci right 1.404687e-02	k: 5057	n:370000
Cons ci ratio: 9.923070e-02	ci left: 3.991523e-03	ci right 4.410895e-03	k: 1553	n:370000
KS ci ratio: 9.944090e-03	ci left: 2.942973e-01	ci right 2.972411e-01	k: 109434	n:370000
SHD   370000 perm   118 sec   (3140 perm/sec)   p_kst 2.957676e-01   p_cons 4.197297e-03   p_joint 1.366757e-02

Outputting figure to mutsig2_images.part000000000157/SHD.2_1047_370000_0.29577_0.0041973_0.013668.png
                gene_name: SHD
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.0042 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0044 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 73 percent done.
SHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
KS ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
SHE   10000 perm   2 sec   (6328 perm/sec)   p_kst 4.032000e-01   p_cons 6.450000e-02   p_joint 3.783000e-01

Joint ci ratio: 3.415801e-02	ci left: 3.902095e-01	ci right 4.038205e-01	k: 7940	n:20000
Cons ci ratio: 1.039341e-01	ci left: 6.293881e-02	ci right 6.988790e-02	k: 1327	n:20000
KS ci ratio: 3.317930e-02	ci left: 4.041695e-01	ci right 4.178564e-01	k: 8220	n:20000
SHE   20000 perm   4 sec   (5663 perm/sec)   p_kst 4.110000e-01   p_cons 6.635000e-02   p_joint 3.970000e-01

Joint ci ratio: 4.842533e-02	ci left: 1.749077e-01	ci right 1.836212e-01	k: 5377	n:30000
Cons ci ratio: 8.525277e-02	ci left: 6.301991e-02	ci right 6.866452e-02	k: 1974	n:30000
KS ci ratio: 2.727901e-02	ci left: 4.020985e-01	ci right 4.132527e-01	k: 12230	n:30000
SHE   30000 perm   6 sec   (5420 perm/sec)   p_kst 4.076667e-01   p_cons 6.580000e-02   p_joint 1.792333e-01

Outputting figure to mutsig2_images.part000000000157/SHE.2_1512_30000_0.40767_0.0658_0.17923.png
                gene_name: SHE
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 74 percent done.
SHISA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
Cons ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
KS ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
SHISA4   10000 perm   1 sec   (6943 perm/sec)   p_kst 7.516000e-01   p_cons 2.745000e-01   p_joint 3.788000e-01

Outputting figure to mutsig2_images.part000000000157/SHISA4.2_614_10000_0.7516_0.2745_0.3788.png
                gene_name: SHISA4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 76 percent done.
SHKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
Cons ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
KS ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
SHKBP1   10000 perm   2 sec   (6193 perm/sec)   p_kst 3.310000e-01   p_cons 2.627000e-01   p_joint 2.320000e-01

Outputting figure to mutsig2_images.part000000000157/SHKBP1.2_2196_10000_0.331_0.2627_0.232.png
                gene_name: SHKBP1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
SHMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
SHMT1   10000 perm   2 sec   (6434 perm/sec)   p_kst 2.326000e-01   p_cons 1.169000e-01   p_joint 2.929000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.598122e-02	ci left: 1.129697e-01	ci right 1.219419e-01	k: 2348	n:20000
KS ci ratio: 5.012231e-02	ci left: 2.282951e-01	ci right 2.400822e-01	k: 4683	n:20000
SHMT1   20000 perm   4 sec   (5681 perm/sec)   p_kst 2.341500e-01   p_cons 1.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHMT1.2_1496_20000_0.23415_0.1174_1.png
                gene_name: SHMT1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SHMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
Cons ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
KS ci ratio: 3.003833e-02	ci left: 6.204504e-01	ci right 6.394738e-01	k: 6300	n:10000
SHMT2   10000 perm   2 sec   (6496 perm/sec)   p_kst 6.300000e-01   p_cons 8.746000e-01   p_joint 6.899000e-01

Outputting figure to mutsig2_images.part000000000157/SHMT2.2_1563_10000_0.63_0.8746_0.6899.png
                gene_name: SHMT2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 80 percent done.
SHPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
Cons ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
SHPK   10000 perm   1 sec   (6693 perm/sec)   p_kst 1.077000e-01   p_cons 5.935000e-01   p_joint 3.084000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.342914e-02	ci left: 5.763805e-01	ci right 5.900953e-01	k: 11665	n:20000
KS ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
SHPK   20000 perm   3 sec   (5889 perm/sec)   p_kst 1.109000e-01   p_cons 5.832500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHPK.2_1465_20000_0.1109_0.58325_1.png
                gene_name: SHPK
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
SHROOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
SHROOM1   10000 perm   2 sec   (6102 perm/sec)   p_kst 5.868000e-01   p_cons 4.680000e-01   p_joint 7.188000e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM1.2_2587_10000_0.5868_0.468_0.7188.png
                gene_name: SHROOM1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 83 percent done.
SIAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
SIAE   10000 perm   2 sec   (6158 perm/sec)   p_kst 2.416000e-01   p_cons 3.389000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000157/SIAE.2_1612_10000_0.2416_0.3389_0.7229.png
                gene_name: SIAE
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 84 percent done.
SIAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
Cons ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
SIAH2   10000 perm   1 sec   (6682 perm/sec)   p_kst 1.292000e-01   p_cons 5.890000e-02   p_joint 1.362000e-01

Joint ci ratio: 6.858488e-02	ci left: 1.355636e-01	ci right 1.452412e-01	k: 2807	n:20000
Cons ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
KS ci ratio: 7.083112e-02	ci left: 1.280762e-01	ci right 1.375308e-01	k: 2655	n:20000
SIAH2   20000 perm   3 sec   (5856 perm/sec)   p_kst 1.327500e-01   p_cons 5.810000e-02   p_joint 1.403500e-01

Joint ci ratio: 4.037723e-02	ci left: 2.342160e-01	ci right 2.439013e-01	k: 7171	n:30000
Cons ci ratio: 9.098567e-02	ci left: 5.560955e-02	ci right 6.094306e-02	k: 1747	n:30000
KS ci ratio: 5.767522e-02	ci left: 1.295715e-01	ci right 1.372996e-01	k: 4002	n:30000
SIAH2   30000 perm   5 sec   (5599 perm/sec)   p_kst 1.334000e-01   p_cons 5.823333e-02   p_joint 2.390333e-01

Outputting figure to mutsig2_images.part000000000157/SIAH2.2_983_30000_0.1334_0.058233_0.23903.png
                gene_name: SIAH2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 86 percent done.
SIDT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 9.857206e-03	ci left: 9.357874e-01	ci right 9.451540e-01	k: 9406	n:10000
KS ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
SIDT2   10000 perm   2 sec   (5927 perm/sec)   p_kst 6.978000e-01   p_cons 9.406000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000157/SIDT2.2_2603_10000_0.6978_0.9406_0.7965.png
                gene_name: SIDT2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 87 percent done.
SIGLEC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
KS ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
SIGLEC15   10000 perm   2 sec   (6659 perm/sec)   p_kst 3.733000e-01   p_cons 1.358000e-01   p_joint 2.762000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC15.2_1011_10000_0.3733_0.1358_0.2762.png
                gene_name: SIGLEC15
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 89 percent done.
SIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
Cons ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
KS ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
SIK1   10000 perm   2 sec   (6006 perm/sec)   p_kst 7.010000e-01   p_cons 9.826000e-01   p_joint 9.549000e-01

Outputting figure to mutsig2_images.part000000000157/SIK1.2_2404_10000_0.701_0.9826_0.9549.png
                gene_name: SIK1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 90 percent done.
SILV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362839e-02	ci left: 5.662431e-01	ci right 5.857126e-01	k: 5760	n:10000
Cons ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
KS ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
SILV   10000 perm   2 sec   (5943 perm/sec)   p_kst 9.870000e-01   p_cons 3.689000e-01   p_joint 5.760000e-01

Outputting figure to mutsig2_images.part000000000157/SILV.2_2030_10000_0.987_0.3689_0.576.png
                gene_name: SILV
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 91 percent done.
SIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
Cons ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
KS ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
SIM2   10000 perm   2 sec   (6254 perm/sec)   p_kst 3.930000e-01   p_cons 4.231000e-01   p_joint 8.714000e-01

Outputting figure to mutsig2_images.part000000000157/SIM2.2_2185_10000_0.393_0.4231_0.8714.png
                gene_name: SIM2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 93 percent done.
SIRPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
Cons ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
SIRPD   10000 perm   1 sec   (6987 perm/sec)   p_kst 9.820000e-02   p_cons 9.889000e-01   p_joint 6.486000e-01

Joint ci ratio: 2.712964e-02	ci left: 5.037459e-01	ci right 5.176510e-01	k: 10214	n:20000
Cons ci ratio: 2.976176e-03	ci left: 9.870837e-01	ci right 9.900717e-01	k: 19773	n:20000
KS ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
SIRPD   20000 perm   3 sec   (6126 perm/sec)   p_kst 9.955000e-02   p_cons 9.886500e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000157/SIRPD.2_610_20000_0.09955_0.98865_0.5107.png
                gene_name: SIRPD
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 94 percent done.
SIRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.010044e-03	ci left: 9.559730e-01	ci right 9.637562e-01	k: 9600	n:10000
Cons ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
KS ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
SIRT2   10000 perm   1 sec   (6892 perm/sec)   p_kst 3.142000e-01   p_cons 5.672000e-01   p_joint 9.600000e-01

Outputting figure to mutsig2_images.part000000000157/SIRT2.2_1234_10000_0.3142_0.5672_0.96.png
                gene_name: SIRT2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 96 percent done.
SIRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
Cons ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
KS ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
SIRT3   10000 perm   2 sec   (6521 perm/sec)   p_kst 2.408000e-01   p_cons 1.043000e-01   p_joint 2.653000e-01

Joint ci ratio: 8.246861e-02	ci left: 9.729878e-02	ci right 1.057175e-01	k: 2029	n:20000
Cons ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
KS ci ratio: 4.888966e-02	ci left: 2.372669e-01	ci right 2.492078e-01	k: 4864	n:20000
SIRT3   20000 perm   3 sec   (5748 perm/sec)   p_kst 2.432000e-01   p_cons 1.063000e-01   p_joint 1.014500e-01

Outputting figure to mutsig2_images.part000000000157/SIRT3.2_1228_20000_0.2432_0.1063_0.10145.png
                gene_name: SIRT3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 97 percent done.
SIRT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
KS ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
SIRT4   10000 perm   1 sec   (6703 perm/sec)   p_kst 2.505000e-01   p_cons 3.538000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIRT4.2_957_10000_0.2505_0.3538_1.png
                gene_name: SIRT4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
SIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
Cons ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KS ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
SIT1   10000 perm   1 sec   (7150 perm/sec)   p_kst 6.413000e-01   p_cons 8.921000e-01   p_joint 9.912000e-01

Outputting figure to mutsig2_images.part000000000157/SIT1.2_611_10000_0.6413_0.8921_0.9912.png
                gene_name: SIT1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000157
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 157 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 4422481: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000158> was used as the working directory.
Started at Wed Oct 24 18:07:36 2012
Results reported at Wed Oct 24 18:21:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000158.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000158.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 158  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000158.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    888.58 sec.
    Max Memory :      5278 MB
    Max Swap   :      7553 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
158
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 158
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 158: processing genes 14205 - 14294
Calculating significance of each gene.
Using projection method.
14205	SIX3	1
14206	SIX4	8.767831e-01
14207	SIX5	8.982787e-01
14208	SIX6	4.259974e-01
14209	SKA1	4.365597e-01
14210	SKA2	4.801028e-01
14211	SKA3	1.962436e-01
14212	SKAP1	7.228303e-01
14213	SKAP2	7.788895e-01
14214	SKI	9.226325e-01
14215	SKIL	4.140057e-01
14216	SKIV2L	9.663956e-01
14217	SKIV2L2	2.959603e-02
14218	SKP1	2.298445e-01
14219	SKP2	7.033876e-01
14220	SLA	6.853028e-01
14221	SLA2	4.310134e-01
14222	SLAIN1	7.702142e-01
14223	SLAIN2	1
14224	SLAMF1	7.807577e-02
14225	SLAMF6	5.390671e-01
14226	SLAMF7	1
14227	SLAMF8	2.176653e-01
14228	SLAMF9	7.350791e-01
14229	SLBP	3.442235e-01
14230	SLC10A1	7.036701e-01
14231	SLC10A2	2.072916e-04
14232	SLC10A3	4.479195e-01
14233	SLC10A4	8.471003e-01
14234	SLC10A5	5.152579e-01
14235	SLC10A6	2.018622e-01
14236	SLC10A7	1
14237	SLC11A1	7.872376e-01
14238	SLC11A2	2.524109e-01
14239	SLC12A1	6.891667e-02
14240	SLC12A2	9.943324e-01
14241	SLC12A3	1
14242	SLC12A4	9.987786e-01
14243	SLC12A5	1
14244	SLC12A6	8.231740e-01
14245	SLC12A7	9.769878e-01
14246	SLC12A8	5.329908e-01
14247	SLC12A9	8.840128e-01
14248	SLC13A1	1.673924e-01
14249	SLC13A2	3.497344e-01
14250	SLC13A3	3.685940e-01
14251	SLC13A4	5.411410e-01
14252	SLC13A5	6.671932e-01
14253	SLC14A1	5.749489e-01
14254	SLC14A2	4.544438e-01
14255	SLC15A1	9.459010e-01
14256	SLC15A2	4.467685e-01
14257	SLC15A3	1
14258	SLC15A4	7.899024e-01
14259	SLC16A1	9.027617e-01
14260	SLC16A10	8.525260e-01
14261	SLC16A11	1
14262	SLC16A12	8.226745e-01
14263	SLC16A13	8.031883e-01
14264	SLC16A14	1
14265	SLC16A2	8.495073e-01
14266	SLC16A3	8.257467e-01
In gene SLC16A4 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 1496    n = 1	mu =   9.71e-07
14267	SLC16A4	8.100226e-01
14268	SLC16A5	1
14269	SLC16A6	1
14270	SLC16A7	7.829043e-01
14271	SLC16A8	1
14272	SLC16A9	8.463760e-01
14273	SLC17A1	8.016379e-02
14274	SLC17A2	2.232508e-01
14275	SLC17A3	5.224026e-02
14276	SLC17A4	6.440730e-01
14277	SLC17A5	7.715423e-01
14278	SLC17A6	3.932646e-02
14279	SLC17A7	8.770218e-01
14280	SLC17A8	1.463771e-01
14281	SLC17A9	1.434258e-01
14282	SLC18A1	1
14283	SLC18A2	4.599408e-01
14284	SLC18A3	9.442796e-01
14285	SLC19A1	8.515610e-01
14286	SLC19A2	1
14287	SLC19A3	2.773650e-01
14288	SLC1A1	8.724801e-01
14289	SLC1A2	2.730345e-01
14290	SLC1A3	1
14291	SLC1A4	1
14292	SLC1A5	1
14293	SLC1A6	2.166131e-01
14294	SLC1A7	9.784818e-01
Done

Running MutSig 2:
Scatter job 158: processing genes 14205 - 14294
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
KS ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
SLC12A1   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.995000e-01   p_cons 4.193000e-01   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A1.19_3504_10000_0.1995_0.4193_0.2972.png
                gene_name: SLC12A1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
SLC14A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.759331e-02	ci left: 3.944612e-01	ci right 4.137947e-01	k: 4041	n:10000
Cons ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
KS ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
SLC14A2   10000 perm   2 sec   (4333 perm/sec)   p_kst 6.578000e-01   p_cons 1.606000e-01   p_joint 4.041000e-01

Outputting figure to mutsig2_images.part000000000158/SLC14A2.18_2839_10000_0.6578_0.1606_0.4041.png
                gene_name: SLC14A2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 3 percent done.
SLC17A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
KS ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
SLC17A6   10000 perm   2 sec   (4814 perm/sec)   p_kst 4.521000e-01   p_cons 8.558000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A6.13_1797_10000_0.4521_0.8558_0.5716.png
                gene_name: SLC17A6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 5 percent done.
SLC12A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
Cons ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
SLC12A5   10000 perm   2 sec   (4571 perm/sec)   p_kst 7.169000e-01   p_cons 4.621000e-01   p_joint 7.025000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A5.12_3580_10000_0.7169_0.4621_0.7025.png
                gene_name: SLC12A5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 7 percent done.
SKIV2L2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
SKIV2L2   10000 perm   2 sec   (4805 perm/sec)   p_kst 1.611000e-01   p_cons 1.038000e-01   p_joint 1.548000e-01

Joint ci ratio: 6.390297e-02	ci left: 1.532661e-01	ci right 1.634335e-01	k: 3166	n:20000
Cons ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
KS ci ratio: 6.270728e-02	ci left: 1.583001e-01	ci right 1.685980e-01	k: 3268	n:20000
SKIV2L2   20000 perm   5 sec   (4380 perm/sec)   p_kst 1.634000e-01   p_cons 9.940000e-02   p_joint 1.583000e-01

Outputting figure to mutsig2_images.part000000000158/SKIV2L2.9_3237_20000_0.1634_0.0994_0.1583.png
                gene_name: SKIV2L2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 8 percent done.
SLC10A2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLC10A2   10000 perm   2 sec   (5259 perm/sec)   p_kst 1   p_cons 7.101000e-01   p_joint 9.394000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A2.9_1071_10000_1_0.7101_0.9394.png
                gene_name: SLC10A2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 10 percent done.
SLC1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
KS ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
SLC1A3   10000 perm   2 sec   (5204 perm/sec)   p_kst 9.592000e-01   p_cons 5.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC1A3.10_1682_10000_0.9592_0.5176_1.png
                gene_name: SLC1A3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SLC15A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
KS ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
SLC15A2   10000 perm   2 sec   (5046 perm/sec)   p_kst 9.270000e-02   p_cons 2.730000e-02   p_joint 3.940000e-02

Joint ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
Cons ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
KS ci ratio: 8.857097e-02	ci left: 8.523565e-02	ci right 9.318425e-02	k: 1783	n:20000
SLC15A2   20000 perm   4 sec   (4612 perm/sec)   p_kst 8.915000e-02   p_cons 3.000000e-02   p_joint 3.445000e-02

Joint ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
Cons ci ratio: 1.240748e-01	ci left: 3.019881e-02	ci right 3.422578e-02	k: 965	n:30000
KS ci ratio: 7.184772e-02	ci left: 8.701428e-02	ci right 9.353198e-02	k: 2707	n:30000
SLC15A2   30000 perm   7 sec   (4420 perm/sec)   p_kst 9.023333e-02   p_cons 3.216667e-02   p_joint 4.323333e-02

Joint ci ratio: 9.811372e-02	ci left: 3.648912e-02	ci right 4.027827e-02	k: 1534	n:40000
Cons ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
KS ci ratio: 6.181527e-02	ci left: 8.851920e-02	ci right 9.419029e-02	k: 3653	n:40000
SLC15A2   40000 perm   9 sec   (4215 perm/sec)   p_kst 9.132500e-02   p_cons 3.165000e-02   p_joint 3.835000e-02

Joint ci ratio: 8.312765e-02	ci left: 4.080723e-02	ci right 4.436613e-02	k: 2128	n:50000
Cons ci ratio: 1.025744e-01	ci left: 2.692241e-02	ci right 2.985269e-02	k: 1418	n:50000
KS ci ratio: 5.533271e-02	ci left: 8.869033e-02	ci right 9.375724e-02	k: 4560	n:50000
SLC15A2   50000 perm   12 sec   (4148 perm/sec)   p_kst 9.120000e-02   p_cons 2.836000e-02   p_joint 4.256000e-02

Joint ci ratio: 8.400973e-02	ci left: 3.354368e-02	ci right 3.650152e-02	k: 2100	n:60000
Cons ci ratio: 9.414499e-02	ci left: 2.675964e-02	ci right 2.941960e-02	k: 1684	n:60000
KS ci ratio: 5.057883e-02	ci left: 8.869370e-02	ci right 9.331261e-02	k: 5459	n:60000
SLC15A2   60000 perm   15 sec   (4074 perm/sec)   p_kst 9.098333e-02   p_cons 2.806667e-02   p_joint 3.500000e-02

Outputting figure to mutsig2_images.part000000000158/SLC15A2.8_2278_60000_0.090983_0.028067_0.035.png
                gene_name: SLC15A2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 14 percent done.
SLC18A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
Cons ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
SLC18A3   10000 perm   2 sec   (5145 perm/sec)   p_kst 6.882000e-01   p_cons 9.268000e-01   p_joint 8.124000e-01

Outputting figure to mutsig2_images.part000000000158/SLC18A3.8_1603_10000_0.6882_0.9268_0.8124.png
                gene_name: SLC18A3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
SKIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.773313e-02	ci left: 6.570614e-01	ci right 6.756416e-01	k: 6664	n:10000
Cons ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
KS ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
SKIL   10000 perm   2 sec   (5518 perm/sec)   p_kst 4.952000e-01   p_cons 5.683000e-01   p_joint 6.664000e-01

Outputting figure to mutsig2_images.part000000000158/SKIL.7_2079_10000_0.4952_0.5683_0.6664.png
                gene_name: SKIL
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 17 percent done.
SKIV2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.381445e-02	ci left: 4.347281e-01	ci right 4.543042e-01	k: 4445	n:10000
Cons ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
KS ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
SKIV2L   10000 perm   2 sec   (4594 perm/sec)   p_kst 3.223000e-01   p_cons 5.725000e-01   p_joint 4.445000e-01

Outputting figure to mutsig2_images.part000000000158/SKIV2L.7_3853_10000_0.3223_0.5725_0.4445.png
                gene_name: SKIV2L
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 19 percent done.
SLC12A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
Cons ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
SLC12A6   10000 perm   2 sec   (4681 perm/sec)   p_kst 3.000000e-03   p_cons 2.108000e-01   p_joint 8.500000e-03

Joint ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
Cons ci ratio: 5.253636e-02	ci left: 2.119970e-01	ci right 2.234852e-01	k: 4354	n:20000
KS ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
SLC12A6   20000 perm   5 sec   (4293 perm/sec)   p_kst 3.100000e-03   p_cons 2.177000e-01   p_joint 3.700000e-03

Joint ci ratio: 1.407590e-01	ci left: 2.342368e-02	ci right 2.700240e-02	k: 755	n:30000
Cons ci ratio: 4.345553e-02	ci left: 2.087089e-01	ci right 2.180133e-01	k: 6400	n:30000
KS ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
SLC12A6   30000 perm   7 sec   (4132 perm/sec)   p_kst 3.133333e-03   p_cons 2.133333e-01   p_joint 2.516667e-02

Joint ci ratio: 1.550650e-01	ci left: 1.450452e-02	ci right 1.696651e-02	k: 628	n:40000
Cons ci ratio: 3.755164e-02	ci left: 2.100637e-01	ci right 2.181279e-01	k: 8563	n:40000
KS ci ratio: 3.472868e-01	ci left: 2.624692e-03	ci right 3.749350e-03	k: 126	n:40000
SLC12A6   40000 perm   10 sec   (4017 perm/sec)   p_kst 3.150000e-03   p_cons 2.140750e-01   p_joint 1.570000e-02

Joint ci ratio: 2.295195e-01	ci left: 5.134365e-03	ci right 6.483983e-03	k: 289	n:50000
Cons ci ratio: 3.423727e-02	ci left: 2.041513e-01	ci right 2.112826e-01	k: 10385	n:50000
KS ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
SLC12A6   50000 perm   13 sec   (3917 perm/sec)   p_kst 2.900000e-03   p_cons 2.077000e-01   p_joint 5.780000e-03

Joint ci ratio: 2.135720e-01	ci left: 4.987021e-03	ci right 6.194892e-03	k: 334	n:60000
Cons ci ratio: 3.121662e-02	ci left: 2.048576e-01	ci right 2.113706e-01	k: 12486	n:60000
KS ci ratio: 3.029138e-01	ci left: 2.362254e-03	ci right 3.220297e-03	k: 166	n:60000
SLC12A6   60000 perm   16 sec   (3837 perm/sec)   p_kst 2.766667e-03   p_cons 2.081000e-01   p_joint 5.566667e-03

Joint ci ratio: 2.265940e-01	ci left: 3.774852e-03	ci right 4.752658e-03	k: 297	n:70000
Cons ci ratio: 2.879267e-02	ci left: 2.063340e-01	ci right 2.123759e-01	k: 14654	n:70000
KS ci ratio: 2.901897e-01	ci left: 2.223115e-03	ci right 2.990471e-03	k: 181	n:70000
SLC12A6   70000 perm   19 sec   (3756 perm/sec)   p_kst 2.585714e-03   p_cons 2.093429e-01   p_joint 4.242857e-03

Joint ci ratio: 2.099784e-01	ci left: 3.882072e-03	ci right 4.804442e-03	k: 346	n:80000
Cons ci ratio: 2.693977e-02	ci left: 2.064480e-01	ci right 2.120981e-01	k: 16741	n:80000
KS ci ratio: 2.663602e-01	ci left: 2.340640e-03	ci right 3.071167e-03	k: 215	n:80000
SLC12A6   80000 perm   22 sec   (3690 perm/sec)   p_kst 2.687500e-03   p_cons 2.092625e-01   p_joint 4.325000e-03

Joint ci ratio: 2.278556e-01	ci left: 2.904406e-03	ci right 3.661502e-03	k: 294	n:90000
Cons ci ratio: 2.534441e-02	ci left: 2.073207e-01	ci right 2.126536e-01	k: 18898	n:90000
KS ci ratio: 2.465895e-01	ci left: 2.454909e-03	ci right 3.155526e-03	k: 251	n:90000
SLC12A6   90000 perm   25 sec   (3634 perm/sec)   p_kst 2.788889e-03   p_cons 2.099778e-01   p_joint 3.266667e-03

Joint ci ratio: 2.237473e-01	ci left: 2.717714e-03	ci right 3.411606e-03	k: 305	n:100000
Cons ci ratio: 2.405171e-02	ci left: 2.073495e-01	ci right 2.124073e-01	k: 20987	n:100000
KS ci ratio: 2.360585e-01	ci left: 2.425511e-03	ci right 3.083857e-03	k: 274	n:100000
SLC12A6   100000 perm   28 sec   (3576 perm/sec)   p_kst 2.740000e-03   p_cons 2.098700e-01   p_joint 3.050000e-03

Joint ci ratio: 2.122621e-01	ci left: 2.762879e-03	ci right 3.427384e-03	k: 339	n:110000
Cons ci ratio: 2.290091e-02	ci left: 2.079220e-01	ci right 2.127478e-01	k: 23136	n:110000
KS ci ratio: 2.237786e-01	ci left: 2.470612e-03	ci right 3.101511e-03	k: 305	n:110000
SLC12A6   110000 perm   31 sec   (3517 perm/sec)   p_kst 2.772727e-03   p_cons 2.103273e-01   p_joint 3.081818e-03

Joint ci ratio: 2.267964e-01	ci left: 2.201788e-03	ci right 2.772680e-03	k: 297	n:120000
Cons ci ratio: 2.242207e-02	ci left: 2.007189e-01	ci right 2.052788e-01	k: 24359	n:120000
KS ci ratio: 2.151644e-01	ci left: 2.461611e-03	ci right 3.062819e-03	k: 330	n:120000
SLC12A6   120000 perm   35 sec   (3462 perm/sec)   p_kst 2.750000e-03   p_cons 2.029917e-01   p_joint 2.475000e-03

Joint ci ratio: 2.223746e-01	ci left: 2.119524e-03	ci right 2.656903e-03	k: 309	n:130000
Cons ci ratio: 2.155832e-02	ci left: 2.005711e-01	ci right 2.049498e-01	k: 26358	n:130000
KS ci ratio: 2.054584e-01	ci left: 2.505457e-03	ci right 3.086305e-03	k: 362	n:130000
SLC12A6   130000 perm   38 sec   (3415 perm/sec)   p_kst 2.784615e-03   p_cons 2.027538e-01   p_joint 2.376923e-03

Joint ci ratio: 2.168550e-01	ci left: 2.076124e-03	ci right 2.587694e-03	k: 325	n:140000
Cons ci ratio: 2.078359e-02	ci left: 2.005043e-01	ci right 2.047223e-01	k: 28365	n:140000
KS ci ratio: 1.964593e-01	ci left: 2.557144e-03	ci right 3.120902e-03	k: 396	n:140000
SLC12A6   140000 perm   42 sec   (3364 perm/sec)   p_kst 2.828571e-03   p_cons 2.026071e-01   p_joint 2.321429e-03

Joint ci ratio: 2.224101e-01	ci left: 1.836890e-03	ci right 2.302693e-03	k: 309	n:150000
Cons ci ratio: 2.009218e-02	ci left: 2.003625e-01	ci right 2.044357e-01	k: 30359	n:150000
KS ci ratio: 1.896541e-01	ci left: 2.570661e-03	ci right 3.115505e-03	k: 425	n:150000
SLC12A6   150000 perm   45 sec   (3312 perm/sec)   p_kst 2.833333e-03   p_cons 2.023933e-01   p_joint 2.060000e-03

Joint ci ratio: 1.777275e-01	ci left: 2.761828e-03	ci right 3.306427e-03	k: 484	n:160000
Cons ci ratio: 1.943536e-02	ci left: 2.007387e-01	ci right 2.046846e-01	k: 32433	n:160000
KS ci ratio: 1.841201e-01	ci left: 2.564892e-03	ci right 3.090880e-03	k: 451	n:160000
SLC12A6   160000 perm   49 sec   (3262 perm/sec)   p_kst 2.818750e-03   p_cons 2.027063e-01   p_joint 3.025000e-03

Joint ci ratio: 1.454756e-01	ci left: 3.943466e-03	ci right 4.567744e-03	k: 722	n:170000
Cons ci ratio: 1.886851e-02	ci left: 2.005684e-01	ci right 2.043947e-01	k: 34421	n:170000
KS ci ratio: 1.743511e-01	ci left: 2.706201e-03	ci right 3.228625e-03	k: 503	n:170000
SLC12A6   170000 perm   53 sec   (3212 perm/sec)   p_kst 2.958824e-03   p_cons 2.024765e-01   p_joint 4.247059e-03

Joint ci ratio: 1.450905e-01	ci left: 3.745771e-03	ci right 4.337045e-03	k: 726	n:180000
Cons ci ratio: 1.833022e-02	ci left: 2.007397e-01	ci right 2.044588e-01	k: 36467	n:180000
KS ci ratio: 1.693827e-01	ci left: 2.715356e-03	ci right 3.223084e-03	k: 533	n:180000
SLC12A6   180000 perm   57 sec   (3167 perm/sec)   p_kst 2.961111e-03   p_cons 2.025944e-01   p_joint 4.033333e-03

Joint ci ratio: 1.409801e-01	ci left: 3.766845e-03	ci right 4.343185e-03	k: 769	n:190000
Cons ci ratio: 1.785762e-02	ci left: 2.004956e-01	ci right 2.041135e-01	k: 38437	n:190000
KS ci ratio: 1.636561e-01	ci left: 2.764115e-03	ci right 3.261767e-03	k: 571	n:190000
SLC12A6   190000 perm   61 sec   (3121 perm/sec)   p_kst 3.005263e-03   p_cons 2.023000e-01   p_joint 4.047368e-03

Joint ci ratio: 1.449200e-01	ci left: 3.380784e-03	ci right 3.913761e-03	k: 728	n:200000
Cons ci ratio: 1.739981e-02	ci left: 2.006459e-01	ci right 2.041727e-01	k: 40481	n:200000
KS ci ratio: 1.595262e-01	ci left: 2.769844e-03	ci right 3.254738e-03	k: 601	n:200000
SLC12A6   200000 perm   65 sec   (3078 perm/sec)   p_kst 3.005000e-03   p_cons 2.024050e-01   p_joint 3.640000e-03

Joint ci ratio: 1.416551e-01	ci left: 3.375895e-03	ci right 3.895098e-03	k: 762	n:210000
Cons ci ratio: 1.697449e-02	ci left: 2.008020e-01	ci right 2.042444e-01	k: 42529	n:210000
KS ci ratio: 1.545938e-01	ci left: 2.816368e-03	ci right 3.292751e-03	k: 640	n:210000
SLC12A6   210000 perm   69 sec   (3035 perm/sec)   p_kst 3.047619e-03   p_cons 2.025190e-01   p_joint 3.628571e-03

Joint ci ratio: 1.447450e-01	ci left: 3.082167e-03	ci right 3.567428e-03	k: 730	n:220000
Cons ci ratio: 1.657262e-02	ci left: 2.010671e-01	ci right 2.044316e-01	k: 44604	n:220000
KS ci ratio: 1.505371e-01	ci left: 2.841372e-03	ci right 3.308236e-03	k: 675	n:220000
SLC12A6   220000 perm   73 sec   (2994 perm/sec)   p_kst 3.068182e-03   p_cons 2.027455e-01   p_joint 3.318182e-03

Joint ci ratio: 1.409382e-01	ci left: 3.115862e-03	ci right 3.592442e-03	k: 770	n:230000
Cons ci ratio: 1.621041e-02	ci left: 2.010630e-01	ci right 2.043532e-01	k: 46622	n:230000
KS ci ratio: 1.464741e-01	ci left: 2.876917e-03	ci right 3.335747e-03	k: 713	n:230000
SLC12A6   230000 perm   78 sec   (2953 perm/sec)   p_kst 3.100000e-03   p_cons 2.027043e-01   p_joint 3.347826e-03

Joint ci ratio: 1.504449e-01	ci left: 2.608577e-03	ci right 3.036903e-03	k: 676	n:240000
Cons ci ratio: 1.586932e-02	ci left: 2.010932e-01	ci right 2.043140e-01	k: 48648	n:240000
KS ci ratio: 1.437820e-01	ci left: 2.865459e-03	ci right 3.313341e-03	k: 740	n:240000
SLC12A6   240000 perm   82 sec   (2915 perm/sec)   p_kst 3.083333e-03   p_cons 2.027000e-01   p_joint 2.816667e-03

Joint ci ratio: 1.495699e-01	ci left: 2.535026e-03	ci right 2.948636e-03	k: 684	n:250000
Cons ci ratio: 1.555236e-02	ci left: 2.010498e-01	ci right 2.042051e-01	k: 50656	n:250000
KS ci ratio: 1.414179e-01	ci left: 2.847271e-03	ci right 3.284375e-03	k: 765	n:250000
SLC12A6   250000 perm   87 sec   (2877 perm/sec)   p_kst 3.060000e-03   p_cons 2.026240e-01   p_joint 2.736000e-03

Joint ci ratio: 1.461928e-01	ci left: 2.556050e-03	ci right 2.962852e-03	k: 716	n:260000
Cons ci ratio: 1.525203e-02	ci left: 2.010449e-01	ci right 2.041386e-01	k: 52673	n:260000
KS ci ratio: 1.383793e-01	ci left: 2.863955e-03	ci right 3.293395e-03	k: 799	n:260000
SLC12A6   260000 perm   92 sec   (2840 perm/sec)   p_kst 3.073077e-03   p_cons 2.025885e-01   p_joint 2.753846e-03

Joint ci ratio: 1.444928e-01	ci left: 2.522051e-03	ci right 2.918372e-03	k: 733	n:270000
Cons ci ratio: 1.497086e-02	ci left: 2.009892e-01	ci right 2.040246e-01	k: 54676	n:270000
KS ci ratio: 1.361852e-01	ci left: 2.850870e-03	ci right 3.271020e-03	k: 825	n:270000
SLC12A6   270000 perm   96 sec   (2811 perm/sec)   p_kst 3.055556e-03   p_cons 2.025037e-01   p_joint 2.714815e-03

Joint ci ratio: 1.425654e-01	ci left: 2.500840e-03	ci right 2.888139e-03	k: 753	n:280000
Cons ci ratio: 1.470094e-02	ci left: 2.010199e-01	ci right 2.040005e-01	k: 56702	n:280000
KS ci ratio: 1.334652e-01	ci left: 2.866388e-03	ci right 3.279718e-03	k: 859	n:280000
SLC12A6   280000 perm   101 sec   (2781 perm/sec)   p_kst 3.067857e-03   p_cons 2.025071e-01   p_joint 2.689286e-03

Joint ci ratio: 1.483018e-01	ci left: 2.225178e-03	ci right 2.584882e-03	k: 696	n:290000
Cons ci ratio: 1.444419e-02	ci left: 2.010696e-01	ci right 2.039984e-01	k: 58734	n:290000
KS ci ratio: 1.304635e-01	ci left: 2.900928e-03	ci right 3.309102e-03	k: 899	n:290000
SLC12A6   290000 perm   105 sec   (2749 perm/sec)   p_kst 3.100000e-03   p_cons 2.025310e-01   p_joint 2.400000e-03

Joint ci ratio: 1.454089e-01	ci left: 2.240910e-03	ci right 2.595478e-03	k: 724	n:300000
Cons ci ratio: 1.420366e-02	ci left: 2.010432e-01	ci right 2.039225e-01	k: 60744	n:300000
KS ci ratio: 1.280663e-01	ci left: 2.913900e-03	ci right 3.315794e-03	k: 933	n:300000
SLC12A6   300000 perm   110 sec   (2721 perm/sec)   p_kst 3.110000e-03   p_cons 2.024800e-01   p_joint 2.413333e-03

Joint ci ratio: 1.436382e-01	ci left: 2.224587e-03	ci right 2.571917e-03	k: 742	n:310000
Cons ci ratio: 1.397225e-02	ci left: 2.010769e-01	ci right 2.039093e-01	k: 62772	n:310000
KS ci ratio: 1.267190e-01	ci left: 2.882360e-03	ci right 3.275407e-03	k: 953	n:310000
SLC12A6   310000 perm   115 sec   (2693 perm/sec)   p_kst 3.074194e-03   p_cons 2.024903e-01   p_joint 2.393548e-03

Joint ci ratio: 1.429701e-01	ci left: 2.176155e-03	ci right 2.514208e-03	k: 749	n:320000
Cons ci ratio: 1.375379e-02	ci left: 2.010620e-01	ci right 2.038496e-01	k: 64785	n:320000
KS ci ratio: 1.243927e-01	ci left: 2.901255e-03	ci right 3.289080e-03	k: 989	n:320000
SLC12A6   320000 perm   120 sec   (2664 perm/sec)   p_kst 3.090625e-03   p_cons 2.024531e-01   p_joint 2.340625e-03

Joint ci ratio: 1.409186e-01	ci left: 2.174510e-03	ci right 2.507053e-03	k: 771	n:330000
Cons ci ratio: 1.354425e-02	ci left: 2.010726e-01	ci right 2.038175e-01	k: 66806	n:330000
KS ci ratio: 1.225499e-01	ci left: 2.901439e-03	ci right 3.283127e-03	k: 1019	n:330000
SLC12A6   330000 perm   125 sec   (2636 perm/sec)   p_kst 3.087879e-03   p_cons 2.024424e-01   p_joint 2.336364e-03

Joint ci ratio: 1.388652e-01	ci left: 2.175833e-03	ci right 2.503329e-03	k: 794	n:340000
Cons ci ratio: 1.334109e-02	ci left: 2.011532e-01	ci right 2.038577e-01	k: 68851	n:340000
KS ci ratio: 1.209602e-01	ci left: 2.893095e-03	ci right 3.268395e-03	k: 1046	n:340000
SLC12A6   340000 perm   130 sec   (2607 perm/sec)   p_kst 3.076471e-03   p_cons 2.025029e-01   p_joint 2.335294e-03

Joint ci ratio: 1.419451e-01	ci left: 2.019924e-03	ci right 2.331267e-03	k: 760	n:350000
Cons ci ratio: 1.315355e-02	ci left: 2.010642e-01	ci right 2.037293e-01	k: 70838	n:350000
KS ci ratio: 1.194307e-01	ci left: 2.885258e-03	ci right 3.254474e-03	k: 1073	n:350000
SLC12A6   350000 perm   136 sec   (2576 perm/sec)   p_kst 3.065714e-03   p_cons 2.023943e-01   p_joint 2.171429e-03

Joint ci ratio: 1.406587e-01	ci left: 2.001328e-03	ci right 2.306774e-03	k: 774	n:360000
Cons ci ratio: 1.296990e-02	ci left: 2.010747e-01	ci right 2.037023e-01	k: 72859	n:360000
KS ci ratio: 1.177969e-01	ci left: 2.885973e-03	ci right 3.249877e-03	k: 1103	n:360000
SLC12A6   360000 perm   141 sec   (2549 perm/sec)   p_kst 3.063889e-03   p_cons 2.023861e-01   p_joint 2.150000e-03

Joint ci ratio: 1.394952e-01	ci left: 1.981140e-03	ci right 2.280797e-03	k: 787	n:370000
Cons ci ratio: 1.279300e-02	ci left: 2.011037e-01	ci right 2.036956e-01	k: 74887	n:370000
KS ci ratio: 1.162799e-01	ci left: 2.884057e-03	ci right 3.242714e-03	k: 1132	n:370000
SLC12A6   370000 perm   147 sec   (2522 perm/sec)   p_kst 3.059459e-03   p_cons 2.023973e-01   p_joint 2.127027e-03

Joint ci ratio: 1.196129e-01	ci left: 2.649796e-03	ci right 2.989434e-03	k: 1070	n:380000
Cons ci ratio: 1.261943e-02	ci left: 2.012259e-01	ci right 2.037839e-01	k: 76951	n:380000
KS ci ratio: 1.145238e-01	ci left: 2.897609e-03	ci right 3.252141e-03	k: 1167	n:380000
SLC12A6   380000 perm   152 sec   (2497 perm/sec)   p_kst 3.071053e-03   p_cons 2.025026e-01   p_joint 2.815789e-03

Joint ci ratio: 1.198982e-01	ci left: 2.569410e-03	ci right 2.899585e-03	k: 1065	n:390000
Cons ci ratio: 1.245235e-02	ci left: 2.013523e-01	ci right 2.038778e-01	k: 79019	n:390000
KS ci ratio: 1.132231e-01	ci left: 2.890569e-03	ci right 3.239956e-03	k: 1194	n:390000
SLC12A6   390000 perm   158 sec   (2471 perm/sec)   p_kst 3.061538e-03   p_cons 2.026128e-01   p_joint 2.730769e-03

Joint ci ratio: 1.184624e-01	ci left: 2.568237e-03	ci right 2.894033e-03	k: 1091	n:400000
Cons ci ratio: 1.230115e-02	ci left: 2.012256e-01	ci right 2.037187e-01	k: 80988	n:400000
KS ci ratio: 1.119199e-01	ci left: 2.886334e-03	ci right 3.230927e-03	k: 1222	n:400000
SLC12A6   400000 perm   163 sec   (2447 perm/sec)   p_kst 3.055000e-03   p_cons 2.024700e-01   p_joint 2.727500e-03

Joint ci ratio: 1.261716e-01	ci left: 2.200553e-03	ci right 2.499232e-03	k: 962	n:410000
Cons ci ratio: 1.215395e-02	ci left: 2.011418e-01	ci right 2.036038e-01	k: 82972	n:410000
KS ci ratio: 1.103514e-01	ci left: 2.898929e-03	ci right 3.239861e-03	k: 1257	n:410000
SLC12A6   410000 perm   169 sec   (2422 perm/sec)   p_kst 3.065854e-03   p_cons 2.023707e-01   p_joint 2.346341e-03

Joint ci ratio: 1.250096e-01	ci left: 2.189669e-03	ci right 2.483930e-03	k: 980	n:420000
Cons ci ratio: 1.201314e-02	ci left: 2.010289e-01	ci right 2.034609e-01	k: 84942	n:420000
KS ci ratio: 1.089316e-01	ci left: 2.906324e-03	ci right 3.243446e-03	k: 1290	n:420000
SLC12A6   420000 perm   175 sec   (2399 perm/sec)   p_kst 3.071429e-03   p_cons 2.022429e-01   p_joint 2.333333e-03

Joint ci ratio: 1.255270e-01	ci left: 2.120720e-03	ci right 2.406983e-03	k: 972	n:430000
Cons ci ratio: 1.187310e-02	ci left: 2.010305e-01	ci right 2.034339e-01	k: 86959	n:430000
KS ci ratio: 1.071601e-01	ci left: 2.936035e-03	ci right 3.270716e-03	k: 1333	n:430000
SLC12A6   430000 perm   181 sec   (2375 perm/sec)   p_kst 3.100000e-03   p_cons 2.022302e-01   p_joint 2.260465e-03

Joint ci ratio: 1.240068e-01	ci left: 2.125365e-03	ci right 2.408525e-03	k: 996	n:440000
Cons ci ratio: 1.173561e-02	ci left: 2.010934e-01	ci right 2.034696e-01	k: 89003	n:440000
KS ci ratio: 1.062098e-01	ci left: 2.922396e-03	ci right 3.252383e-03	k: 1357	n:440000
SLC12A6   440000 perm   187 sec   (2351 perm/sec)   p_kst 3.084091e-03   p_cons 2.022795e-01   p_joint 2.263636e-03

Joint ci ratio: 1.235142e-01	ci left: 2.095361e-03	ci right 2.373333e-03	k: 1004	n:450000
Cons ci ratio: 1.159896e-02	ci left: 2.012601e-01	ci right 2.036104e-01	k: 91095	n:450000
KS ci ratio: 1.048288e-01	ci left: 2.935344e-03	ci right 3.262217e-03	k: 1393	n:450000
SLC12A6   450000 perm   193 sec   (2326 perm/sec)   p_kst 3.095556e-03   p_cons 2.024333e-01   p_joint 2.231111e-03

Joint ci ratio: 1.243257e-01	ci left: 2.022420e-03	ci right 2.292608e-03	k: 991	n:460000
Cons ci ratio: 1.146335e-02	ci left: 2.015217e-01	ci right 2.038473e-01	k: 93234	n:460000
KS ci ratio: 1.038285e-01	ci left: 2.928696e-03	ci right 3.251527e-03	k: 1420	n:460000
SLC12A6   460000 perm   200 sec   (2302 perm/sec)   p_kst 3.086957e-03   p_cons 2.026826e-01   p_joint 2.154348e-03

Joint ci ratio: 1.232134e-01	ci left: 2.016501e-03	ci right 2.283313e-03	k: 1009	n:470000
Cons ci ratio: 1.133894e-02	ci left: 2.015854e-01	ci right 2.038863e-01	k: 95285	n:470000
KS ci ratio: 1.027497e-01	ci left: 2.928564e-03	ci right 3.247823e-03	k: 1450	n:470000
SLC12A6   470000 perm   206 sec   (2279 perm/sec)   p_kst 3.085106e-03   p_cons 2.027340e-01   p_joint 2.146809e-03

Joint ci ratio: 1.048767e-01	ci left: 2.749842e-03	ci right 3.056207e-03	k: 1392	n:480000
Cons ci ratio: 1.121994e-02	ci left: 2.016051e-01	ci right 2.038819e-01	k: 97316	n:480000
KS ci ratio: 1.017727e-01	ci left: 2.924393e-03	ci right 3.239986e-03	k: 1478	n:480000
SLC12A6   480000 perm   212 sec   (2259 perm/sec)   p_kst 3.079167e-03   p_cons 2.027417e-01   p_joint 2.900000e-03

Joint ci ratio: 1.037286e-01	ci left: 2.755338e-03	ci right 3.058750e-03	k: 1423	n:490000
Cons ci ratio: 1.110622e-02	ci left: 2.015772e-01	ci right 2.038304e-01	k: 99324	n:490000
KS ci ratio: 1.009576e-01	ci left: 2.912448e-03	ci right 3.224086e-03	k: 1502	n:490000
SLC12A6   490000 perm   219 sec   (2239 perm/sec)   p_kst 3.065306e-03   p_cons 2.027020e-01   p_joint 2.904082e-03

Joint ci ratio: 1.029730e-01	ci left: 2.741145e-03	ci right 3.040661e-03	k: 1444	n:500000
Cons ci ratio: 1.100141e-02	ci left: 2.013888e-01	ci right 2.036186e-01	k: 101251	n:500000
KS ci ratio: 9.983439e-02	ci left: 2.920493e-03	ci right 3.229310e-03	k: 1536	n:500000
SLC12A6   500000 perm   225 sec   (2221 perm/sec)   p_kst 3.072000e-03   p_cons 2.025020e-01   p_joint 2.888000e-03

Joint ci ratio: 9.435998e-02	ci left: 3.213367e-03	ci right 3.533492e-03	k: 1719	n:510000
Cons ci ratio: 1.088985e-02	ci left: 2.014937e-01	ci right 2.037019e-01	k: 103324	n:510000
KS ci ratio: 9.884256e-02	ci left: 2.922502e-03	ci right 3.228284e-03	k: 1567	n:510000
SLC12A6   510000 perm   232 sec   (2202 perm/sec)   p_kst 3.072549e-03   p_cons 2.025961e-01   p_joint 3.370588e-03

Outputting figure to mutsig2_images.part000000000158/SLC12A6.7_3675_510000_0.0030725_0.2026_0.0033706.png
                gene_name: SLC12A6
               theta_stop: 0.099 
                    nperm: 510000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0032 
    ci_joint_bounds_right: 0.0035 

Current progress: 20 percent done.
SLC12A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
Cons ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
KS ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
SLC12A9   10000 perm   2 sec   (5104 perm/sec)   p_kst 2.304000e-01   p_cons 8.885000e-01   p_joint 4.493000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A9.7_2797_10000_0.2304_0.8885_0.4493.png
                gene_name: SLC12A9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 22 percent done.
SLC13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
Cons ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
KS ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
SLC13A1   10000 perm   2 sec   (5563 perm/sec)   p_kst 2.408000e-01   p_cons 2.822000e-01   p_joint 2.893000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A1.7_1848_10000_0.2408_0.2822_0.2893.png
                gene_name: SLC13A1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 24 percent done.
SLC13A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
Cons ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
SLC13A2   10000 perm   2 sec   (5504 perm/sec)   p_kst 1.502000e-01   p_cons 3.780000e-01   p_joint 1.660000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A2.7_1974_10000_0.1502_0.378_0.166.png
                gene_name: SLC13A2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 25 percent done.
SLC17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
KS ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
SLC17A1   10000 perm   2 sec   (5694 perm/sec)   p_kst 1.599000e-01   p_cons 1.230000e-02   p_joint 1.070000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
KS ci ratio: 6.321655e-02	ci left: 1.561283e-01	ci right 1.663704e-01	k: 3224	n:20000
SLC17A1   20000 perm   4 sec   (5149 perm/sec)   p_kst 1.612000e-01   p_cons 9.800000e-03   p_joint 1.590000e-02

Joint ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
Cons ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
KS ci ratio: 5.203699e-02	ci left: 1.549115e-01	ci right 1.632213e-01	k: 4771	n:30000
SLC17A1   30000 perm   6 sec   (4936 perm/sec)   p_kst 1.590333e-01   p_cons 9.533333e-03   p_joint 1.376667e-02

Joint ci ratio: 2.012037e-01	ci left: 8.453845e-03	ci right 1.036839e-02	k: 375	n:40000
Cons ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
KS ci ratio: 4.472600e-02	ci left: 1.574848e-01	ci right 1.647145e-01	k: 6443	n:40000
SLC17A1   40000 perm   8 sec   (4787 perm/sec)   p_kst 1.610750e-01   p_cons 9.625000e-03   p_joint 9.375000e-03

Joint ci ratio: 1.414857e-01	ci left: 1.404930e-02	ci right 1.620753e-02	k: 755	n:50000
Cons ci ratio: 1.790038e-01	ci left: 8.649199e-03	ci right 1.036847e-02	k: 474	n:50000
KS ci ratio: 4.010217e-02	ci left: 1.572130e-01	ci right 1.636665e-01	k: 8021	n:50000
SLC17A1   50000 perm   11 sec   (4571 perm/sec)   p_kst 1.604200e-01   p_cons 9.480000e-03   p_joint 1.510000e-02

Joint ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
Cons ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
KS ci ratio: 3.646253e-02	ci left: 1.585636e-01	ci right 1.644692e-01	k: 9690	n:60000
SLC17A1   60000 perm   13 sec   (4475 perm/sec)   p_kst 1.615000e-01   p_cons 9.216667e-03   p_joint 1.198333e-02

Joint ci ratio: 1.244682e-01	ci left: 1.310114e-02	ci right 1.485377e-02	k: 977	n:70000
Cons ci ratio: 1.525653e-01	ci left: 8.629675e-03	ci right 1.006858e-02	k: 653	n:70000
KS ci ratio: 3.306135e-02	ci left: 1.644708e-01	ci right 1.700140e-01	k: 11706	n:70000
SLC17A1   70000 perm   16 sec   (4394 perm/sec)   p_kst 1.672286e-01   p_cons 9.328571e-03   p_joint 1.395714e-02

Joint ci ratio: 1.347022e-01	ci left: 9.768969e-03	ci right 1.119187e-02	k: 837	n:80000
Cons ci ratio: 1.435311e-01	ci left: 8.574114e-03	ci right 9.911839e-03	k: 738	n:80000
KS ci ratio: 3.100462e-02	ci left: 1.639493e-01	ci right 1.691249e-01	k: 13322	n:80000
SLC17A1   80000 perm   19 sec   (4319 perm/sec)   p_kst 1.665250e-01   p_cons 9.225000e-03   p_joint 1.046250e-02

Joint ci ratio: 1.313442e-01	ci left: 9.155955e-03	ci right 1.045371e-02	k: 881	n:90000
Cons ci ratio: 1.347004e-01	ci left: 8.693936e-03	ci right 9.960215e-03	k: 838	n:90000
KS ci ratio: 2.934000e-02	ci left: 1.630773e-01	ci right 1.679443e-01	k: 14895	n:90000
SLC17A1   90000 perm   21 sec   (4243 perm/sec)   p_kst 1.655000e-01   p_cons 9.311111e-03   p_joint 9.788889e-03

Joint ci ratio: 1.282207e-01	ci left: 8.665931e-03	ci right 9.862792e-03	k: 925	n:100000
Cons ci ratio: 1.280116e-01	ci left: 8.694978e-03	ci right 9.893743e-03	k: 928	n:100000
KS ci ratio: 2.781837e-02	ci left: 1.633605e-01	ci right 1.679789e-01	k: 16566	n:100000
SLC17A1   100000 perm   24 sec   (4171 perm/sec)   p_kst 1.656600e-01   p_cons 9.280000e-03   p_joint 9.250000e-03

Joint ci ratio: 9.991502e-02	ci left: 1.311003e-02	ci right 1.449760e-02	k: 1517	n:110000
Cons ci ratio: 1.216286e-01	ci left: 8.785266e-03	ci right 9.931735e-03	k: 1028	n:110000
KS ci ratio: 2.653400e-02	ci left: 1.633624e-01	ci right 1.677644e-01	k: 18211	n:110000
SLC17A1   110000 perm   27 sec   (4089 perm/sec)   p_kst 1.655545e-01   p_cons 9.345455e-03   p_joint 1.379091e-02

Joint ci ratio: 8.994002e-02	ci left: 1.488197e-02	ci right 1.629158e-02	k: 1869	n:120000
Cons ci ratio: 1.164267e-01	ci left: 8.813184e-03	ci right 9.910723e-03	k: 1122	n:120000
KS ci ratio: 2.544324e-02	ci left: 1.630365e-01	ci right 1.672464e-01	k: 19816	n:120000
SLC17A1   120000 perm   30 sec   (4010 perm/sec)   p_kst 1.651333e-01   p_cons 9.350000e-03   p_joint 1.557500e-02

Joint ci ratio: 8.955847e-02	ci left: 1.387223e-02	ci right 1.518032e-02	k: 1887	n:130000
Cons ci ratio: 1.122128e-01	ci left: 8.777862e-03	ci right 9.828816e-03	k: 1208	n:130000
KS ci ratio: 2.448362e-02	ci left: 1.626874e-01	ci right 1.667276e-01	k: 21411	n:130000
SLC17A1   130000 perm   33 sec   (3943 perm/sec)   p_kst 1.647000e-01   p_cons 9.292308e-03   p_joint 1.451538e-02

Joint ci ratio: 8.979867e-02	ci left: 1.282518e-02	ci right 1.403795e-02	k: 1879	n:140000
Cons ci ratio: 1.084256e-01	ci left: 8.748201e-03	ci right 9.757995e-03	k: 1294	n:140000
KS ci ratio: 2.356065e-02	ci left: 1.631373e-01	ci right 1.670338e-01	k: 23111	n:140000
SLC17A1   140000 perm   36 sec   (3872 perm/sec)   p_kst 1.650786e-01   p_cons 9.242857e-03   p_joint 1.342143e-02

Joint ci ratio: 8.359788e-02	ci left: 1.384236e-02	ci right 1.505652e-02	k: 2166	n:150000
Cons ci ratio: 1.054610e-01	ci left: 8.645101e-03	ci right 9.614016e-03	k: 1368	n:150000
KS ci ratio: 2.276278e-02	ci left: 1.631911e-01	ci right 1.669552e-01	k: 24760	n:150000
SLC17A1   150000 perm   40 sec   (3754 perm/sec)   p_kst 1.650667e-01   p_cons 9.120000e-03   p_joint 1.444000e-02

Joint ci ratio: 7.716014e-02	ci left: 1.526208e-02	ci right 1.649305e-02	k: 2539	n:160000
Cons ci ratio: 1.018754e-01	ci left: 8.701415e-03	ci right 9.641499e-03	k: 1466	n:160000
KS ci ratio: 2.201389e-02	ci left: 1.635762e-01	ci right 1.672234e-01	k: 26463	n:160000
SLC17A1   160000 perm   44 sec   (3673 perm/sec)   p_kst 1.653938e-01   p_cons 9.162500e-03   p_joint 1.586875e-02

Joint ci ratio: 7.042254e-02	ci left: 1.726924e-02	ci right 1.853552e-02	k: 3042	n:170000
Cons ci ratio: 9.869601e-02	ci left: 8.740119e-03	ci right 9.653207e-03	k: 1562	n:170000
KS ci ratio: 2.133025e-02	ci left: 1.639705e-01	ci right 1.675115e-01	k: 28175	n:170000
SLC17A1   170000 perm   47 sec   (3623 perm/sec)   p_kst 1.657353e-01   p_cons 9.188235e-03   p_joint 1.789412e-02

Outputting figure to mutsig2_images.part000000000158/SLC17A1.7_1448_170000_0.16574_0.0091882_0.017894.png
                gene_name: SLC17A1
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 27 percent done.
SLC17A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
SLC17A4   10000 perm   2 sec   (5297 perm/sec)   p_kst 1.810000e-02   p_cons 2.885000e-01   p_joint 3.610000e-02

Joint ci ratio: 1.327092e-01	ci left: 3.901975e-02	ci right 4.461445e-02	k: 835	n:20000
Cons ci ratio: 4.372111e-02	ci left: 2.803894e-01	ci right 2.929727e-01	k: 5733	n:20000
KS ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
SLC17A4   20000 perm   4 sec   (4806 perm/sec)   p_kst 1.730000e-02   p_cons 2.866500e-01   p_joint 4.175000e-02

Joint ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
Cons ci ratio: 3.645169e-02	ci left: 2.731342e-01	ci right 2.833088e-01	k: 8346	n:30000
KS ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
SLC17A4   30000 perm   7 sec   (4577 perm/sec)   p_kst 1.790000e-02   p_cons 2.782000e-01   p_joint 4.546667e-02

Joint ci ratio: 7.960942e-02	ci left: 5.487036e-02	ci right 5.944420e-02	k: 2285	n:40000
Cons ci ratio: 3.148840e-02	ci left: 2.748323e-01	ci right 2.836498e-01	k: 11169	n:40000
KS ci ratio: 1.463272e-01	ci left: 1.633401e-02	ci right 1.893669e-02	k: 704	n:40000
SLC17A4   40000 perm   9 sec   (4426 perm/sec)   p_kst 1.760000e-02   p_cons 2.792250e-01   p_joint 5.712500e-02

Joint ci ratio: 7.774921e-02	ci left: 4.649590e-02	ci right 5.027676e-02	k: 2418	n:50000
Cons ci ratio: 2.824196e-02	ci left: 2.741955e-01	ci right 2.820703e-01	k: 13906	n:50000
KS ci ratio: 1.304468e-01	ci left: 1.658165e-02	ci right 1.891482e-02	k: 886	n:50000
SLC17A4   50000 perm   12 sec   (4309 perm/sec)   p_kst 1.772000e-02   p_cons 2.781200e-01   p_joint 4.836000e-02

Joint ci ratio: 8.189239e-02	ci left: 3.527498e-02	ci right 3.830337e-02	k: 2206	n:60000
Cons ci ratio: 2.580098e-02	ci left: 2.742351e-01	ci right 2.814197e-01	k: 16669	n:60000
KS ci ratio: 1.203773e-01	ci left: 1.632029e-02	ci right 1.842677e-02	k: 1041	n:60000
SLC17A4   60000 perm   14 sec   (4217 perm/sec)   p_kst 1.735000e-02   p_cons 2.778167e-01   p_joint 3.676667e-02

Joint ci ratio: 7.427166e-02	ci left: 3.684820e-02	ci right 3.970453e-02	k: 2678	n:70000
Cons ci ratio: 2.328783e-02	ci left: 2.847753e-01	ci right 2.914995e-01	k: 20169	n:70000
KS ci ratio: 1.105565e-01	ci left: 1.666659e-02	ci right 1.863082e-02	k: 1234	n:70000
SLC17A4   70000 perm   17 sec   (4126 perm/sec)   p_kst 1.762857e-02   p_cons 2.881286e-01   p_joint 3.825714e-02

Joint ci ratio: 6.459170e-02	ci left: 4.258910e-02	ci right 4.544409e-02	k: 3520	n:80000
Cons ci ratio: 2.240479e-02	ci left: 2.736392e-01	ci right 2.798520e-01	k: 22139	n:80000
KS ci ratio: 1.037320e-01	ci left: 1.662701e-02	ci right 1.845822e-02	k: 1402	n:80000
SLC17A4   80000 perm   20 sec   (4041 perm/sec)   p_kst 1.752500e-02   p_cons 2.767375e-01   p_joint 4.400000e-02

Joint ci ratio: 6.185213e-02	ci left: 4.139926e-02	ci right 4.405253e-02	k: 3844	n:90000
Cons ci ratio: 2.110089e-02	ci left: 2.742441e-01	ci right 2.801036e-01	k: 24945	n:90000
KS ci ratio: 9.816014e-02	ci left: 1.655577e-02	ci right 1.827554e-02	k: 1566	n:90000
SLC17A4   90000 perm   23 sec   (3962 perm/sec)   p_kst 1.740000e-02   p_cons 2.771667e-01   p_joint 4.271111e-02

Outputting figure to mutsig2_images.part000000000158/SLC17A4.7_1538_90000_0.0174_0.27717_0.042711.png
                gene_name: SLC17A4
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 29 percent done.
SLC17A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
SLC17A8   10000 perm   2 sec   (4712 perm/sec)   p_kst 3.494000e-01   p_cons 2.137000e-01   p_joint 3.363000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A8.7_1818_10000_0.3494_0.2137_0.3363.png
                gene_name: SLC17A8
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 31 percent done.
SLC1A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
Cons ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
SLC1A6   10000 perm   2 sec   (5111 perm/sec)   p_kst 6.891000e-01   p_cons 7.134000e-01   p_joint 8.743000e-01

Outputting figure to mutsig2_images.part000000000158/SLC1A6.7_1731_10000_0.6891_0.7134_0.8743.png
                gene_name: SLC1A6
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
SLAMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
KS ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
SLAMF1   10000 perm   2 sec   (5808 perm/sec)   p_kst 8.772000e-01   p_cons 5.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLAMF1.6_1036_10000_0.8772_0.5795_1.png
                gene_name: SLAMF1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SLC13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
Cons ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
KS ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
SLC13A3   10000 perm   2 sec   (5252 perm/sec)   p_kst 2.596000e-01   p_cons 3.850000e-01   p_joint 2.982000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A3.6_1861_10000_0.2596_0.385_0.2982.png
                gene_name: SLC13A3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
SLC17A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
Cons ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
SLC17A2   10000 perm   2 sec   (5417 perm/sec)   p_kst 6.408000e-01   p_cons 1.057000e-01   p_joint 2.910000e-01

Joint ci ratio: 3.801612e-02	ci left: 3.404503e-01	ci right 3.536942e-01	k: 6941	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 2.074293e-02	ci left: 6.343066e-01	ci right 6.476524e-01	k: 12820	n:20000
SLC17A2   20000 perm   4 sec   (4889 perm/sec)   p_kst 6.410000e-01   p_cons 1.025500e-01   p_joint 3.470500e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A2.6_1351_20000_0.641_0.10255_0.34705.png
                gene_name: SLC17A2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 37 percent done.
SLC17A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
KS ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
SLC17A3   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.065000e-01   p_cons 1.461000e-01   p_joint 2.689000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A3.6_1541_10000_0.2065_0.1461_0.2689.png
                gene_name: SLC17A3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 39 percent done.
SLC18A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
Cons ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
KS ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
SLC18A2   10000 perm   2 sec   (5394 perm/sec)   p_kst 1.705000e-01   p_cons 1.510000e-01   p_joint 2.382000e-01

Outputting figure to mutsig2_images.part000000000158/SLC18A2.6_1605_10000_0.1705_0.151_0.2382.png
                gene_name: SLC18A2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 41 percent done.
SLC19A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
SLC19A3   10000 perm   2 sec   (5723 perm/sec)   p_kst 6.512000e-01   p_cons 1.000000e-02   p_joint 3.840000e-02

Joint ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
Cons ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
KS ci ratio: 2.046433e-02	ci left: 6.405316e-01	ci right 6.538256e-01	k: 12944	n:20000
SLC19A3   20000 perm   4 sec   (5103 perm/sec)   p_kst 6.472000e-01   p_cons 1.165000e-02   p_joint 8.295000e-02

Joint ci ratio: 5.668246e-02	ci left: 1.335887e-01	ci right 1.414149e-01	k: 4124	n:30000
Cons ci ratio: 2.000777e-01	ci left: 1.136853e-02	ci right 1.392715e-02	k: 378	n:30000
KS ci ratio: 1.661428e-02	ci left: 6.443710e-01	ci right 6.552000e-01	k: 19494	n:30000
SLC19A3   30000 perm   6 sec   (4890 perm/sec)   p_kst 6.498000e-01   p_cons 1.260000e-02   p_joint 1.374667e-01

Joint ci ratio: 5.572229e-02	ci left: 1.070237e-01	ci right 1.131830e-01	k: 4403	n:40000
Cons ci ratio: 1.791708e-01	ci left: 1.076482e-02	ci right 1.290693e-02	k: 472	n:40000
KS ci ratio: 1.438691e-02	ci left: 6.451521e-01	ci right 6.545262e-01	k: 25994	n:40000
SLC19A3   40000 perm   8 sec   (4746 perm/sec)   p_kst 6.498500e-01   p_cons 1.180000e-02   p_joint 1.100750e-01

Joint ci ratio: 6.391802e-02	ci left: 6.771948e-02	ci right 7.221060e-02	k: 3497	n:50000
Cons ci ratio: 1.558154e-01	ci left: 1.152531e-02	ci right 1.349189e-02	k: 624	n:50000
KS ci ratio: 1.283899e-02	ci left: 6.466830e-01	ci right 6.550595e-01	k: 32544	n:50000
SLC19A3   50000 perm   11 sec   (4605 perm/sec)   p_kst 6.508800e-01   p_cons 1.248000e-02   p_joint 6.994000e-02

Joint ci ratio: 6.140581e-02	ci left: 6.164370e-02	ci right 6.556531e-02	k: 3815	n:60000
Cons ci ratio: 1.427221e-01	ci left: 1.152984e-02	ci right 1.331778e-02	k: 744	n:60000
KS ci ratio: 1.169408e-02	ci left: 6.480727e-01	ci right 6.557126e-01	k: 39114	n:60000
SLC19A3   60000 perm   13 sec   (4487 perm/sec)   p_kst 6.519000e-01   p_cons 1.240000e-02   p_joint 6.358333e-02

Joint ci ratio: 5.731273e-02	ci left: 6.084468e-02	ci right 6.444882e-02	k: 4384	n:70000
Cons ci ratio: 1.333970e-01	ci left: 1.137227e-02	ci right 1.301140e-02	k: 852	n:70000
KS ci ratio: 1.101574e-02	ci left: 6.404399e-01	ci right 6.475482e-01	k: 45080	n:70000
SLC19A3   70000 perm   16 sec   (4392 perm/sec)   p_kst 6.440000e-01   p_cons 1.217143e-02   p_joint 6.262857e-02

Joint ci ratio: 5.317909e-02	ci left: 6.190618e-02	ci right 6.530055e-02	k: 5087	n:80000
Cons ci ratio: 1.242573e-01	ci left: 1.152346e-02	ci right 1.306221e-02	k: 982	n:80000
KS ci ratio: 1.009479e-02	ci left: 6.500530e-01	ci right 6.566609e-01	k: 52269	n:80000
SLC19A3   80000 perm   19 sec   (4296 perm/sec)   p_kst 6.533625e-01   p_cons 1.227500e-02   p_joint 6.358750e-02

Joint ci ratio: 5.325747e-02	ci left: 5.526365e-02	ci right 5.829833e-02	k: 5109	n:90000
Cons ci ratio: 1.176298e-01	ci left: 1.147142e-02	ci right 1.291583e-02	k: 1096	n:90000
KS ci ratio: 9.511080e-03	ci left: 6.505477e-01	ci right 6.567757e-01	k: 58830	n:90000
SLC19A3   90000 perm   21 sec   (4209 perm/sec)   p_kst 6.536667e-01   p_cons 1.217778e-02   p_joint 5.676667e-02

Joint ci ratio: 5.002562e-02	ci left: 5.640099e-02	ci right 5.930473e-02	k: 5784	n:100000
Cons ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
KS ci ratio: 9.026532e-03	ci left: 6.505312e-01	ci right 6.564399e-01	k: 65349	n:100000
SLC19A3   100000 perm   24 sec   (4132 perm/sec)   p_kst 6.534900e-01   p_cons 1.205000e-02   p_joint 5.784000e-02

Joint ci ratio: 4.146150e-02	ci left: 7.359422e-02	ci right 7.671913e-02	k: 8266	n:110000
Cons ci ratio: 1.067952e-01	ci left: 1.145339e-02	ci right 1.275434e-02	k: 1330	n:110000
KS ci ratio: 8.607313e-03	ci left: 6.506247e-01	ci right 6.562581e-01	k: 71879	n:110000
SLC19A3   110000 perm   27 sec   (4053 perm/sec)   p_kst 6.534455e-01   p_cons 1.209091e-02   p_joint 7.514545e-02

Joint ci ratio: 3.987244e-02	ci left: 7.305348e-02	ci right 7.603379e-02	k: 8944	n:120000
Cons ci ratio: 1.028236e-01	ci left: 1.135097e-02	ci right 1.258944e-02	k: 1435	n:120000
KS ci ratio: 8.243678e-03	ci left: 6.505911e-01	ci right 6.559848e-01	k: 78395	n:120000
SLC19A3   120000 perm   30 sec   (3984 perm/sec)   p_kst 6.532917e-01   p_cons 1.195833e-02   p_joint 7.453333e-02

Joint ci ratio: 4.070899e-02	ci left: 6.522002e-02	ci right 6.793782e-02	k: 8654	n:130000
Cons ci ratio: 9.839575e-02	ci left: 1.146770e-02	ci right 1.266191e-02	k: 1567	n:130000
KS ci ratio: 7.922550e-03	ci left: 6.505670e-01	ci right 6.557493e-01	k: 84911	n:130000
SLC19A3   130000 perm   33 sec   (3917 perm/sec)   p_kst 6.531615e-01   p_cons 1.205385e-02   p_joint 6.656923e-02

Outputting figure to mutsig2_images.part000000000158/SLC19A3.6_1511_130000_0.65316_0.012054_0.066569.png
                gene_name: SLC19A3
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 42 percent done.
SLC11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.231198e-02	ci left: 7.467503e-01	ci right 7.637008e-01	k: 7553	n:10000
KS ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
SLC11A2   10000 perm   2 sec   (5300 perm/sec)   p_kst 7.112000e-01   p_cons 7.553000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC11A2.5_1945_10000_0.7112_0.7553_1.png
                gene_name: SLC11A2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
SLC12A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
Cons ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
KS ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
SLC12A2   10000 perm   2 sec   (5101 perm/sec)   p_kst 1.573000e-01   p_cons 2.555000e-01   p_joint 2.187000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A2.5_3747_10000_0.1573_0.2555_0.2187.png
                gene_name: SLC12A2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 46 percent done.
SLC13A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
Cons ci ratio: 2.140611e-02	ci left: 7.619276e-01	ci right 7.785147e-01	k: 7703	n:10000
KS ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
SLC13A5   10000 perm   2 sec   (5708 perm/sec)   p_kst 6.373000e-01   p_cons 7.703000e-01   p_joint 7.867000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A5.5_1755_10000_0.6373_0.7703_0.7867.png
                gene_name: SLC13A5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 47 percent done.
SLC1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
SLC1A2   10000 perm   2 sec   (5722 perm/sec)   p_kst 2.319000e-01   p_cons 5.363000e-01   p_joint 3.214000e-01

Outputting figure to mutsig2_images.part000000000158/SLC1A2.5_1769_10000_0.2319_0.5363_0.3214.png
                gene_name: SLC1A2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 49 percent done.
SKA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
Cons ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
SKA3   10000 perm   2 sec   (5894 perm/sec)   p_kst 3.070000e-02   p_cons 6.441000e-01   p_joint 7.410000e-02

Joint ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
Cons ci ratio: 1.978549e-02	ci left: 6.558482e-01	ci right 6.690046e-01	k: 13249	n:20000
KS ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
SKA3   20000 perm   4 sec   (5344 perm/sec)   p_kst 2.975000e-02   p_cons 6.624500e-01   p_joint 6.990000e-02

Joint ci ratio: 8.541492e-02	ci left: 6.279123e-02	ci right 6.842658e-02	k: 1967	n:30000
Cons ci ratio: 1.665445e-02	ci left: 6.432672e-01	ci right 6.541040e-01	k: 19461	n:30000
KS ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
SKA3   30000 perm   6 sec   (5132 perm/sec)   p_kst 3.000000e-02   p_cons 6.487000e-01   p_joint 6.556667e-02

Joint ci ratio: 6.828015e-02	ci left: 7.351984e-02	ci right 7.874190e-02	k: 3044	n:40000
Cons ci ratio: 1.446523e-02	ci left: 6.426697e-01	ci right 6.520589e-01	k: 25895	n:40000
KS ci ratio: 1.115929e-01	ci left: 2.825267e-02	ci right 3.161603e-02	k: 1196	n:40000
SKA3   40000 perm   8 sec   (4971 perm/sec)   p_kst 2.990000e-02   p_cons 6.473750e-01   p_joint 7.610000e-02

Joint ci ratio: 6.115222e-02	ci left: 7.361302e-02	ci right 7.827635e-02	k: 3796	n:50000
Cons ci ratio: 1.290459e-02	ci left: 6.443568e-01	ci right 6.527460e-01	k: 32428	n:50000
KS ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
SKA3   50000 perm   10 sec   (4848 perm/sec)   p_kst 3.028000e-02   p_cons 6.485600e-01   p_joint 7.592000e-02

Outputting figure to mutsig2_images.part000000000158/SKA3.4_1322_50000_0.03028_0.64856_0.07592.png
                gene_name: SKA3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 51 percent done.
SKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
KS ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
SKAP1   10000 perm   2 sec   (6290 perm/sec)   p_kst 6.913000e-01   p_cons 8.076000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKAP1.4_1128_10000_0.6913_0.8076_1.png
                gene_name: SKAP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SKP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
SKP2   10000 perm   2 sec   (5790 perm/sec)   p_kst 7.913000e-01   p_cons 5.674000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKP2.4_1491_10000_0.7913_0.5674_1.png
                gene_name: SKP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
SLAMF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
SLAMF8   10000 perm   2 sec   (5886 perm/sec)   p_kst 5.968000e-01   p_cons 5.532000e-01   p_joint 7.231000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF8.4_878_10000_0.5968_0.5532_0.7231.png
                gene_name: SLAMF8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 56 percent done.
SLC10A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
SLC10A3   10000 perm   2 sec   (5642 perm/sec)   p_kst 5.465000e-01   p_cons 8.570000e-02   p_joint 2.930000e-01

Joint ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
Cons ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
KS ci ratio: 2.593354e-02	ci left: 5.262564e-01	ci right 5.401340e-01	k: 10664	n:20000
SLC10A3   20000 perm   4 sec   (5091 perm/sec)   p_kst 5.332000e-01   p_cons 8.340000e-02   p_joint 1.891500e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A3.4_1438_20000_0.5332_0.0834_0.18915.png
                gene_name: SLC10A3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
SLC10A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
Cons ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
KS ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
SLC10A6   10000 perm   2 sec   (6205 perm/sec)   p_kst 2.553000e-01   p_cons 2.015000e-01   p_joint 2.222000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A6.4_1158_10000_0.2553_0.2015_0.2222.png
                gene_name: SLC10A6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 59 percent done.
SLC12A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
SLC12A3   10000 perm   3 sec   (3296 perm/sec)   p_kst 1.568000e-01   p_cons 2.210000e-01   p_joint 1.699000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A3.4_3197_10000_0.1568_0.221_0.1699.png
                gene_name: SLC12A3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
SLC12A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
Cons ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
KS ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
SLC12A7   10000 perm   2 sec   (5055 perm/sec)   p_kst 5.440000e-02   p_cons 4.531000e-01   p_joint 7.480000e-02

Joint ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
Cons ci ratio: 3.063835e-02	ci left: 4.431378e-01	ci right 4.569767e-01	k: 9001	n:20000
KS ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
SLC12A7   20000 perm   4 sec   (4558 perm/sec)   p_kst 5.290000e-02   p_cons 4.500500e-01   p_joint 7.260000e-02

Joint ci ratio: 8.555457e-02	ci left: 6.259523e-02	ci right 6.822263e-02	k: 1961	n:30000
Cons ci ratio: 2.489337e-02	ci left: 4.468558e-01	ci right 4.581534e-01	k: 13575	n:30000
KS ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
SLC12A7   30000 perm   7 sec   (4371 perm/sec)   p_kst 5.256667e-02   p_cons 4.525000e-01   p_joint 6.536667e-02

Outputting figure to mutsig2_images.part000000000158/SLC12A7.4_3348_30000_0.052567_0.4525_0.065367.png
                gene_name: SLC12A7
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 63 percent done.
SLC12A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
KS ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
SLC12A8   10000 perm   2 sec   (5506 perm/sec)   p_kst 9.752000e-01   p_cons 2.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC12A8.4_2197_10000_0.9752_0.2313_1.png
                gene_name: SLC12A8
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SLC13A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
SLC13A4   10000 perm   2 sec   (5657 perm/sec)   p_kst 8.660000e-01   p_cons 1.248000e-01   p_joint 4.830000e-01

Joint ci ratio: 2.938218e-02	ci left: 4.639119e-01	ci right 4.777965e-01	k: 9417	n:20000
Cons ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
KS ci ratio: 1.002982e-02	ci left: 8.797352e-01	ci right 8.886528e-01	k: 17685	n:20000
SLC13A4   20000 perm   4 sec   (5092 perm/sec)   p_kst 8.842500e-01   p_cons 1.182000e-01   p_joint 4.708500e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A4.4_1945_20000_0.88425_0.1182_0.47085.png
                gene_name: SLC13A4
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 66 percent done.
SLC14A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
Cons ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
KS ci ratio: 1.815547e-02	ci left: 8.157822e-01	ci right 8.308289e-01	k: 8234	n:10000
SLC14A1   10000 perm   2 sec   (6221 perm/sec)   p_kst 8.234000e-01   p_cons 2.086000e-01   p_joint 6.452000e-01

Outputting figure to mutsig2_images.part000000000158/SLC14A1.4_1374_10000_0.8234_0.2086_0.6452.png
                gene_name: SLC14A1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 68 percent done.
SLC15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
SLC15A1   10000 perm   2 sec   (5580 perm/sec)   p_kst 6.723000e-01   p_cons 6.120000e-02   p_joint 2.451000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 1.145634e-01	ci left: 5.212349e-02	ci right 5.850656e-02	k: 1105	n:20000
KS ci ratio: 1.934700e-02	ci left: 6.658457e-01	ci right 6.789041e-01	k: 13448	n:20000
SLC15A1   20000 perm   4 sec   (5027 perm/sec)   p_kst 6.724000e-01   p_cons 5.525000e-02   p_joint 1.613000e-01

Joint ci ratio: 4.279335e-02	ci left: 2.138678e-01	ci right 2.232534e-01	k: 6556	n:30000
Cons ci ratio: 9.145886e-02	ci left: 5.505507e-02	ci right 6.036432e-02	k: 1730	n:30000
KS ci ratio: 1.583521e-02	ci left: 6.659849e-01	ci right 6.766486e-01	k: 20140	n:30000
SLC15A1   30000 perm   6 sec   (4793 perm/sec)   p_kst 6.713333e-01   p_cons 5.766667e-02   p_joint 2.185333e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A1.4_2219_30000_0.67133_0.057667_0.21853.png
                gene_name: SLC15A1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
SLC17A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
Cons ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
KS ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
SLC17A9   10000 perm   2 sec   (5888 perm/sec)   p_kst 5.507000e-01   p_cons 5.501000e-01   p_joint 6.432000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A9.4_1363_10000_0.5507_0.5501_0.6432.png
                gene_name: SLC17A9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 71 percent done.
SLC16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
Cons ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
KS ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
SLC16A1   10000 perm   2 sec   (6122 perm/sec)   p_kst 4.359000e-01   p_cons 6.687000e-01   p_joint 6.258000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A1.3_1519_10000_0.4359_0.6687_0.6258.png
                gene_name: SLC16A1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 73 percent done.
SLC16A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
Cons ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
KS ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
SLC16A10   10000 perm   2 sec   (6083 perm/sec)   p_kst 8.537000e-01   p_cons 6.479000e-01   p_joint 9.328000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A10.3_1572_10000_0.8537_0.6479_0.9328.png
                gene_name: SLC16A10
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 75 percent done.
SLC16A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
Cons ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
KS ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
SLC16A12   10000 perm   2 sec   (6180 perm/sec)   p_kst 2.695000e-01   p_cons 4.324000e-01   p_joint 4.134000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A12.3_1575_10000_0.2695_0.4324_0.4134.png
                gene_name: SLC16A12
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 76 percent done.
SIX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
KS ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
SIX4   10000 perm   2 sec   (6054 perm/sec)   p_kst 9.689000e-01   p_cons 9.725000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SIX4.2_2358_10000_0.9689_0.9725_1.png
                gene_name: SIX4
               theta_stop: 0.0070 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
SIX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
Cons ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
KS ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
SIX6   10000 perm   1 sec   (6708 perm/sec)   p_kst 4.467000e-01   p_cons 9.817000e-01   p_joint 4.467000e-01

Outputting figure to mutsig2_images.part000000000158/SIX6.2_749_10000_0.4467_0.9817_0.4467.png
                gene_name: SIX6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
SKA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 9.939328e-02	ci left: 1.278700e-01	ci right 1.413437e-01	k: 1345	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
SKA1   10000 perm   1 sec   (7003 perm/sec)   p_kst 8.370000e-02   p_cons 1.345000e-01   p_joint 1.446000e-01

Joint ci ratio: 9.019006e-02	ci left: 8.239466e-02	ci right 9.022610e-02	k: 1725	n:20000
Cons ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
KS ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
SKA1   20000 perm   3 sec   (6170 perm/sec)   p_kst 8.215000e-02   p_cons 1.269000e-01   p_joint 8.625000e-02

Outputting figure to mutsig2_images.part000000000158/SKA1.2_792_20000_0.08215_0.1269_0.08625.png
                gene_name: SKA1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 81 percent done.
SKP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
Cons ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
KS ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
SKP1   10000 perm   1 sec   (6874 perm/sec)   p_kst 3.598000e-01   p_cons 7.730000e-01   p_joint 8.159000e-01

Outputting figure to mutsig2_images.part000000000158/SKP1.2_539_10000_0.3598_0.773_0.8159.png
                gene_name: SKP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 83 percent done.
SLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
Cons ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
KS ci ratio: 6.907414e-02	ci left: 2.351136e-01	ci right 2.520360e-01	k: 2435	n:10000
SLA2   10000 perm   1 sec   (6675 perm/sec)   p_kst 2.435000e-01   p_cons 1.048000e-01   p_joint 2.809000e-01

Joint ci ratio: 5.047417e-02	ci left: 2.258174e-01	ci right 2.375607e-01	k: 4633	n:20000
Cons ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
KS ci ratio: 4.882335e-02	ci left: 2.377627e-01	ci right 2.497119e-01	k: 4874	n:20000
SLA2   20000 perm   3 sec   (5846 perm/sec)   p_kst 2.437000e-01   p_cons 1.060500e-01   p_joint 2.316500e-01

Outputting figure to mutsig2_images.part000000000158/SLA2.2_814_20000_0.2437_0.10605_0.23165.png
                gene_name: SLA2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
SLAMF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
SLAMF6   10000 perm   2 sec   (6487 perm/sec)   p_kst 7.552000e-01   p_cons 1.387000e-01   p_joint 7.490000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF6.2_1031_10000_0.7552_0.1387_0.749.png
                gene_name: SLAMF6
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 86 percent done.
SLBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
Cons ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
SLBP   10000 perm   1 sec   (6984 perm/sec)   p_kst 2.160000e-02   p_cons 3.526000e-01   p_joint 2.200000e-02

Joint ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
Cons ci ratio: 3.767060e-02	ci left: 3.445815e-01	ci right 3.578618e-01	k: 7024	n:20000
KS ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
SLBP   20000 perm   3 sec   (6159 perm/sec)   p_kst 2.100000e-02   p_cons 3.512000e-01   p_joint 1.705000e-02

Joint ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
Cons ci ratio: 3.071407e-02	ci left: 3.464606e-01	ci right 3.573014e-01	k: 10556	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
SLBP   30000 perm   5 sec   (5850 perm/sec)   p_kst 2.090000e-02   p_cons 3.518667e-01   p_joint 2.220000e-02

Joint ci ratio: 1.487067e-01	ci left: 1.580399e-02	ci right 1.836681e-02	k: 682	n:40000
Cons ci ratio: 2.680599e-02	ci left: 3.436795e-01	ci right 3.530425e-01	k: 13934	n:40000
KS ci ratio: 1.316779e-01	ci left: 2.024606e-02	ci right 2.312396e-02	k: 866	n:40000
SLBP   40000 perm   7 sec   (5643 perm/sec)   p_kst 2.165000e-02   p_cons 3.483500e-01   p_joint 1.705000e-02

Joint ci ratio: 5.257439e-02	ci left: 9.742324e-02	ci right 1.027033e-01	k: 5002	n:50000
Cons ci ratio: 2.400640e-02	ci left: 3.436044e-01	ci right 3.519733e-01	k: 17389	n:50000
KS ci ratio: 1.169928e-01	ci left: 2.067381e-02	ci right 2.326210e-02	k: 1097	n:50000
SLBP   50000 perm   9 sec   (5451 perm/sec)   p_kst 2.194000e-02   p_cons 3.477800e-01   p_joint 1.000400e-01

Joint ci ratio: 5.282926e-02	ci left: 8.182523e-02	ci right 8.628176e-02	k: 5042	n:60000
Cons ci ratio: 2.198092e-02	ci left: 3.426085e-01	ci right 3.502397e-01	k: 20785	n:60000
KS ci ratio: 1.076208e-01	ci left: 2.046787e-02	ci right 2.281205e-02	k: 1297	n:60000
SLBP   60000 perm   11 sec   (5275 perm/sec)   p_kst 2.161667e-02   p_cons 3.464167e-01   p_joint 8.403333e-02

Joint ci ratio: 9.865434e-02	ci left: 2.096790e-02	ci right 2.315768e-02	k: 1543	n:70000
Cons ci ratio: 2.034609e-02	ci left: 3.429884e-01	ci right 3.500529e-01	k: 24256	n:70000
KS ci ratio: 9.964879e-02	ci left: 2.054974e-02	ci right 2.271874e-02	k: 1513	n:70000
SLBP   70000 perm   14 sec   (5128 perm/sec)   p_kst 2.161429e-02   p_cons 3.465143e-01   p_joint 2.204286e-02

Outputting figure to mutsig2_images.part000000000158/SLBP.2_845_70000_0.021614_0.34651_0.022043.png
                gene_name: SLBP
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 88 percent done.
SLC10A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
KS ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
SLC10A5   10000 perm   2 sec   (6299 perm/sec)   p_kst 6.211000e-01   p_cons 7.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC10A5.2_1319_10000_0.6211_0.7479_1.png
                gene_name: SLC10A5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SLC10A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
KS ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
SLC10A7   10000 perm   1 sec   (6770 perm/sec)   p_kst 8.739000e-01   p_cons 3.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC10A7.2_1116_10000_0.8739_0.3082_1.png
                gene_name: SLC10A7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SLC11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
Cons ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
SLC11A1   10000 perm   2 sec   (6115 perm/sec)   p_kst 1.904000e-01   p_cons 1.376000e-01   p_joint 1.513000e-01

Outputting figure to mutsig2_images.part000000000158/SLC11A1.2_1713_10000_0.1904_0.1376_0.1513.png
                gene_name: SLC11A1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
SLC15A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
Cons ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
KS ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
SLC15A3   10000 perm   2 sec   (6219 perm/sec)   p_kst 1.499000e-01   p_cons 5.471000e-01   p_joint 3.566000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A3.2_1778_10000_0.1499_0.5471_0.3566.png
                gene_name: SLC15A3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 95 percent done.
SLC15A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
Cons ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
KS ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
SLC15A4   10000 perm   2 sec   (6182 perm/sec)   p_kst 3.070000e-01   p_cons 1.181000e-01   p_joint 2.593000e-01

Joint ci ratio: 5.733343e-02	ci left: 1.839901e-01	ci right 1.949003e-01	k: 3788	n:20000
Cons ci ratio: 7.634997e-02	ci left: 1.119863e-01	ci right 1.209255e-01	k: 2328	n:20000
KS ci ratio: 4.163075e-02	ci left: 3.007104e-01	ci right 3.135458e-01	k: 6142	n:20000
SLC15A4   20000 perm   4 sec   (5524 perm/sec)   p_kst 3.071000e-01   p_cons 1.164000e-01   p_joint 1.894000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A4.2_1766_20000_0.3071_0.1164_0.1894.png
                gene_name: SLC15A4
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 97 percent done.
SLC16A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
SLC16A7   10000 perm   2 sec   (6361 perm/sec)   p_kst 8.064000e-01   p_cons 6.060000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
KS ci ratio: 1.332905e-02	ci left: 8.067171e-01	ci right 8.175920e-01	k: 16244	n:20000
SLC16A7   20000 perm   4 sec   (5657 perm/sec)   p_kst 8.122000e-01   p_cons 6.200000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.853736e-02	ci left: 5.861147e-02	ci right 6.407386e-02	k: 1839	n:30000
KS ci ratio: 1.088184e-02	ci left: 8.077674e-01	ci right 8.166387e-01	k: 24367	n:30000
SLC16A7   30000 perm   6 sec   (5381 perm/sec)   p_kst 8.122333e-01   p_cons 6.130000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC16A7.2_1453_30000_0.81223_0.0613_1.png
                gene_name: SLC16A7
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC17A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
Cons ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
SLC17A5   10000 perm   2 sec   (6320 perm/sec)   p_kst 8.881000e-01   p_cons 4.596000e-01   p_joint 8.214000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A5.2_1532_10000_0.8881_0.4596_0.8214.png
                gene_name: SLC17A5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000158
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 158 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4422485: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000159> was used as the working directory.
Started at Wed Oct 24 18:07:42 2012
Results reported at Wed Oct 24 19:11:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000159.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000159.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 159  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000159.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3829.25 sec.
    Max Memory :      5387 MB
    Max Swap   :      7981 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
159
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 159
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 159: processing genes 14295 - 14385
Calculating significance of each gene.
Using projection method.
14295	SLC20A1	9.545782e-01
14296	SLC20A2	1
14297	SLC22A1	1
14298	SLC22A10	1
14299	SLC22A11	2.710724e-01
14300	SLC22A12	1
14301	SLC22A13	8.428665e-01
14302	SLC22A14	9.854465e-01
14303	SLC22A15	1
14304	SLC22A16	8.413512e-01
14305	SLC22A17	7.814026e-01
14306	SLC22A18	5.254455e-01
14307	SLC22A2	1
14308	SLC22A20	1
14309	SLC22A23	6.297396e-01
14310	SLC22A25	1
14311	SLC22A3	1
14312	SLC22A4	3.802265e-01
14313	SLC22A5	1
14314	SLC22A6	1.104303e-03
14315	SLC22A7	7.890946e-02
14316	SLC22A8	3.472030e-01
14317	SLC22A9	8.480807e-01
14318	SLC23A1	1
14319	SLC23A2	3.925816e-01
14320	SLC23A3	3.769962e-01
14321	SLC24A1	1
14322	SLC24A2	9.349863e-01
14323	SLC24A3	4.042820e-01
14324	SLC24A4	1
14325	SLC24A5	3.944776e-01
14326	SLC24A6	9.380482e-01
14327	SLC25A1	1
14328	SLC25A10	4.716750e-02
14329	SLC25A11	4.797702e-01
14330	SLC25A12	3.708359e-01
14331	SLC25A13	9.825576e-01
14332	SLC25A14	1.149047e-01
14333	SLC25A15	7.617049e-01
14334	SLC25A16	5.835238e-01
14335	SLC25A17	1
14336	SLC25A18	7.200206e-01
14337	SLC25A19	7.338148e-01
14338	SLC25A2	5.650771e-01
14339	SLC25A20	6.052821e-01
14340	SLC25A21	5.573638e-01
14341	SLC25A22	6.898635e-01
14342	SLC25A23	9.020142e-01
14343	SLC25A24	9.015438e-01
14344	SLC25A25	9.838469e-01
14345	SLC25A26	4.671680e-01
14346	SLC25A27	8.750815e-01
14347	SLC25A28	8.557872e-01
14348	SLC25A3	7.589357e-01
14349	SLC25A30	8.357733e-01
14350	SLC25A31	5.495859e-01
14351	SLC25A32	3.645877e-01
14352	SLC25A33	7.512814e-01
14353	SLC25A34	1
14354	SLC25A35	1
14355	SLC25A36	6.692077e-01
14356	SLC25A37	2.546539e-02
14357	SLC25A38	6.648930e-01
14358	SLC25A39	3.027738e-01
14359	SLC25A4	1
14360	SLC25A40	8.307345e-01
14361	SLC25A41	5.881329e-01
14362	SLC25A42	7.006565e-01
14363	SLC25A43	7.618362e-01
14364	SLC25A44	7.045866e-01
14365	SLC25A45	5.003135e-01
14366	SLC25A46	1
14367	SLC25A5	5.338047e-01
14368	SLC25A6	2.297878e-01
14369	SLC26A1	1
14370	SLC26A10	6.519200e-01
14371	SLC26A11	9.639029e-01
14372	SLC26A2	6.905664e-01
14373	SLC26A3	5.233489e-02
14374	SLC26A4	4.645357e-01
14375	SLC26A5	5.115010e-01
14376	SLC26A6	1
14377	SLC26A7	8.257641e-01
14378	SLC26A8	6.088827e-01
14379	SLC26A9	8.190682e-01
14380	SLC27A1	6.800139e-01
14381	SLC27A2	7.133985e-01
14382	SLC27A3	4.979884e-01
14383	SLC27A4	9.280110e-01
14384	SLC27A5	9.503919e-01
14385	SLC27A6	1.866091e-01
Done

Running MutSig 2:
Scatter job 159: processing genes 14295 - 14385
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC26A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
KS ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
SLC26A7   10000 perm   3 sec   (3814 perm/sec)   p_kst 6.541000e-01   p_cons 8.602000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC26A7.11_2104_10000_0.6541_0.8602_1.png
                gene_name: SLC26A7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SLC27A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
SLC27A6   10000 perm   2 sec   (5245 perm/sec)   p_kst 3.977000e-01   p_cons 7.708000e-01   p_joint 7.475000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A6.11_1900_10000_0.3977_0.7708_0.7475.png
                gene_name: SLC27A6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 4 percent done.
SLC22A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
SLC22A6   10000 perm   2 sec   (5687 perm/sec)   p_kst 4.976000e-01   p_cons 5.474000e-01   p_joint 6.554000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A6.10_1732_10000_0.4976_0.5474_0.6554.png
                gene_name: SLC22A6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 5 percent done.
SLC26A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
Cons ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
KS ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
SLC26A3   10000 perm   2 sec   (6092 perm/sec)   p_kst 2.331000e-01   p_cons 9.152000e-01   p_joint 3.650000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A3.9_2375_10000_0.2331_0.9152_0.365.png
                gene_name: SLC26A3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
SLC26A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
Cons ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
KS ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
SLC26A5   10000 perm   2 sec   (5700 perm/sec)   p_kst 2.662000e-01   p_cons 9.879000e-01   p_joint 3.790000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A5.8_2348_10000_0.2662_0.9879_0.379.png
                gene_name: SLC26A5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 9 percent done.
SLC22A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
Cons ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
KS ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
SLC22A15   10000 perm   1 sec   (6668 perm/sec)   p_kst 2.608000e-01   p_cons 6.170000e-02   p_joint 1.907000e-01

Joint ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
Cons ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
KS ci ratio: 4.557144e-02	ci left: 2.638559e-01	ci right 2.762110e-01	k: 5400	n:20000
SLC22A15   20000 perm   3 sec   (5915 perm/sec)   p_kst 2.700000e-01   p_cons 6.095000e-02   p_joint 1.102000e-01

Joint ci ratio: 5.525404e-02	ci left: 1.396826e-01	ci right 1.476532e-01	k: 4309	n:30000
Cons ci ratio: 8.913233e-02	ci left: 5.786080e-02	ci right 6.329135e-02	k: 1816	n:30000
KS ci ratio: 3.786000e-02	ci left: 2.582564e-01	ci right 2.682561e-01	k: 7897	n:30000
SLC22A15   30000 perm   5 sec   (5641 perm/sec)   p_kst 2.632333e-01   p_cons 6.053333e-02   p_joint 1.436333e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A15.7_1692_30000_0.26323_0.060533_0.14363.png
                gene_name: SLC22A15
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
SLC22A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
Cons ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
KS ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
SLC22A7   10000 perm   2 sec   (6012 perm/sec)   p_kst 7.776000e-01   p_cons 4.070000e-01   p_joint 8.376000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A7.7_1687_10000_0.7776_0.407_0.8376.png
                gene_name: SLC22A7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 13 percent done.
SLC26A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
SLC26A8   10000 perm   2 sec   (4723 perm/sec)   p_kst 9.280000e-02   p_cons 8.577000e-01   p_joint 2.420000e-01

Joint ci ratio: 6.051847e-02	ci left: 1.681264e-01	ci right 1.786687e-01	k: 3467	n:20000
Cons ci ratio: 1.120775e-02	ci left: 8.546067e-01	ci right 8.642886e-01	k: 17190	n:20000
KS ci ratio: 8.630591e-02	ci left: 8.945046e-02	ci right 9.756816e-02	k: 1869	n:20000
SLC26A8   20000 perm   4 sec   (4619 perm/sec)   p_kst 9.345000e-02   p_cons 8.595000e-01   p_joint 1.733500e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A8.7_2989_20000_0.09345_0.8595_0.17335.png
                gene_name: SLC26A8
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
SLC26A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
KS ci ratio: 1.423778e-02	ci left: 8.770500e-01	ci right 8.897257e-01	k: 8835	n:10000
SLC26A9   10000 perm   2 sec   (5658 perm/sec)   p_kst 8.835000e-01   p_cons 8.551000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC26A9.7_2752_10000_0.8835_0.8551_1.png
                gene_name: SLC26A9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
SLC22A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
SLC22A16   10000 perm   2 sec   (6114 perm/sec)   p_kst 2.676000e-01   p_cons 3.200000e-03   p_joint 1.940000e-02

Joint ci ratio: 1.802519e-01	ci left: 2.101484e-02	ci right 2.522538e-02	k: 461	n:20000
Cons ci ratio: 5.095746e-01	ci left: 2.202806e-03	ci right 3.747331e-03	k: 58	n:20000
KS ci ratio: 4.558878e-02	ci left: 2.637070e-01	ci right 2.760599e-01	k: 5397	n:20000
SLC22A16   20000 perm   4 sec   (5503 perm/sec)   p_kst 2.698500e-01   p_cons 2.900000e-03   p_joint 2.305000e-02

Joint ci ratio: 1.780490e-01	ci left: 1.448301e-02	ci right 1.734519e-02	k: 476	n:30000
Cons ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
KS ci ratio: 3.701026e-02	ci left: 2.671027e-01	ci right 2.772081e-01	k: 8164	n:30000
SLC22A16   30000 perm   6 sec   (5240 perm/sec)   p_kst 2.721333e-01   p_cons 2.866667e-03   p_joint 1.586667e-02

Joint ci ratio: 1.312915e-01	ci left: 2.036703e-02	ci right 2.325297e-02	k: 871	n:40000
Cons ci ratio: 3.715487e-01	ci left: 2.260691e-03	ci right 3.313558e-03	k: 110	n:40000
KS ci ratio: 3.201078e-02	ci left: 2.682900e-01	ci right 2.770430e-01	k: 10906	n:40000
SLC22A16   40000 perm   8 sec   (5079 perm/sec)   p_kst 2.726500e-01   p_cons 2.750000e-03   p_joint 2.177500e-02

Joint ci ratio: 1.710055e-01	ci left: 9.510141e-03	ci right 1.130738e-02	k: 519	n:50000
Cons ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
KS ci ratio: 2.864975e-02	ci left: 2.685011e-01	ci right 2.763254e-01	k: 13620	n:50000
SLC22A16   50000 perm   10 sec   (4951 perm/sec)   p_kst 2.724000e-01   p_cons 2.860000e-03   p_joint 1.038000e-02

Joint ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
Cons ci ratio: 3.274133e-01	ci left: 1.993779e-03	ci right 2.788911e-03	k: 142	n:60000
KS ci ratio: 2.617907e-02	ci left: 2.684588e-01	ci right 2.755966e-01	k: 16321	n:60000
SLC22A16   60000 perm   12 sec   (4840 perm/sec)   p_kst 2.720167e-01   p_cons 2.366667e-03   p_joint 1.243333e-02

Joint ci ratio: 1.481685e-01	ci left: 9.166041e-03	ci right 1.064644e-02	k: 692	n:70000
Cons ci ratio: 3.002828e-01	ci left: 2.064353e-03	ci right 2.806425e-03	k: 169	n:70000
KS ci ratio: 2.419464e-02	ci left: 2.694174e-01	ci right 2.760300e-01	k: 19090	n:70000
SLC22A16   70000 perm   15 sec   (4727 perm/sec)   p_kst 2.727143e-01   p_cons 2.414286e-03   p_joint 9.885714e-03

Joint ci ratio: 1.503544e-01	ci left: 7.791233e-03	ci right 9.069800e-03	k: 673	n:80000
Cons ci ratio: 2.833007e-01	ci left: 2.049609e-03	ci right 2.737273e-03	k: 190	n:80000
KS ci ratio: 2.264435e-02	ci left: 2.694167e-01	ci right 2.755998e-01	k: 21800	n:80000
SLC22A16   80000 perm   17 sec   (4638 perm/sec)   p_kst 2.725000e-01   p_cons 2.375000e-03   p_joint 8.412500e-03

Joint ci ratio: 1.191791e-01	ci left: 1.116942e-02	ci right 1.259563e-02	k: 1068	n:90000
Cons ci ratio: 2.682745e-01	ci left: 2.049426e-03	ci right 2.694429e-03	k: 212	n:90000
KS ci ratio: 2.131891e-02	ci left: 2.701577e-01	ci right 2.759903e-01	k: 24576	n:90000
SLC22A16   90000 perm   20 sec   (4554 perm/sec)   p_kst 2.730667e-01   p_cons 2.355556e-03   p_joint 1.186667e-02

Joint ci ratio: 1.444548e-01	ci left: 6.781714e-03	ci right 7.847163e-03	k: 730	n:100000
Cons ci ratio: 2.456489e-01	ci left: 2.228151e-03	ci right 2.861253e-03	k: 253	n:100000
KS ci ratio: 2.020290e-02	ci left: 2.707388e-01	ci right 2.762743e-01	k: 27350	n:100000
SLC22A16   100000 perm   22 sec   (4478 perm/sec)   p_kst 2.735000e-01   p_cons 2.530000e-03   p_joint 7.300000e-03

Joint ci ratio: 9.530873e-02	ci left: 1.442310e-02	ci right 1.587536e-02	k: 1665	n:110000
Cons ci ratio: 2.339654e-01	ci left: 2.247763e-03	ci right 2.851669e-03	k: 279	n:110000
KS ci ratio: 1.926761e-02	ci left: 2.707676e-01	ci right 2.760444e-01	k: 30074	n:110000
SLC22A16   110000 perm   25 sec   (4406 perm/sec)   p_kst 2.734000e-01   p_cons 2.536364e-03   p_joint 1.513636e-02

Joint ci ratio: 1.001740e-01	ci left: 1.196842e-02	ci right 1.323863e-02	k: 1511	n:120000
Cons ci ratio: 2.227128e-01	ci left: 2.288305e-03	ci right 2.869483e-03	k: 308	n:120000
KS ci ratio: 1.845278e-02	ci left: 2.707632e-01	ci right 2.758144e-01	k: 32794	n:120000
SLC22A16   120000 perm   28 sec   (4339 perm/sec)   p_kst 2.732833e-01   p_cons 2.566667e-03   p_joint 1.259167e-02

Joint ci ratio: 7.277551e-02	ci left: 2.103569e-02	ci right 2.263190e-02	k: 2837	n:130000
Cons ci ratio: 2.126266e-01	ci left: 2.330481e-03	ci right 2.892072e-03	k: 338	n:130000
KS ci ratio: 1.775600e-02	ci left: 2.702573e-01	ci right 2.751067e-01	k: 35448	n:130000
SLC22A16   130000 perm   30 sec   (4274 perm/sec)   p_kst 2.726769e-01   p_cons 2.600000e-03   p_joint 2.182308e-02

Joint ci ratio: 7.164440e-02	ci left: 2.018511e-02	ci right 2.169197e-02	k: 2930	n:140000
Cons ci ratio: 2.029716e-01	ci left: 2.387479e-03	ci right 2.933444e-03	k: 371	n:140000
KS ci ratio: 1.711129e-02	ci left: 2.703185e-01	ci right 2.749910e-01	k: 38171	n:140000
SLC22A16   140000 perm   33 sec   (4212 perm/sec)   p_kst 2.726500e-01   p_cons 2.650000e-03   p_joint 2.092857e-02

Joint ci ratio: 1.438434e-01	ci left: 4.572174e-03	ci right 5.287169e-03	k: 738	n:150000
Cons ci ratio: 2.158787e-01	ci left: 1.956619e-03	ci right 2.436282e-03	k: 328	n:150000
KS ci ratio: 1.651042e-02	ci left: 2.708929e-01	ci right 2.754093e-01	k: 40972	n:150000
SLC22A16   150000 perm   36 sec   (4151 perm/sec)   p_kst 2.731467e-01   p_cons 2.186667e-03   p_joint 4.920000e-03

Joint ci ratio: 1.173562e-01	ci left: 6.518423e-03	ci right 7.337098e-03	k: 1107	n:160000
Cons ci ratio: 2.096032e-01	ci left: 1.952671e-03	ci right 2.415664e-03	k: 348	n:160000
KS ci ratio: 1.597321e-02	ci left: 2.712857e-01	ci right 2.756600e-01	k: 43755	n:160000
SLC22A16   160000 perm   39 sec   (4092 perm/sec)   p_kst 2.734687e-01   p_cons 2.175000e-03   p_joint 6.918750e-03

Joint ci ratio: 1.021846e-01	ci left: 8.143589e-03	ci right 9.026233e-03	k: 1458	n:170000
Cons ci ratio: 2.016657e-01	ci left: 1.994039e-03	ci right 2.446734e-03	k: 376	n:170000
KS ci ratio: 1.550978e-02	ci left: 2.710064e-01	ci right 2.752484e-01	k: 46431	n:170000
SLC22A16   170000 perm   42 sec   (4036 perm/sec)   p_kst 2.731235e-01   p_cons 2.211765e-03   p_joint 8.576471e-03

Joint ci ratio: 1.026714e-01	ci left: 7.620690e-03	ci right 8.450828e-03	k: 1445	n:180000
Cons ci ratio: 1.948078e-01	ci left: 2.025819e-03	ci right 2.468234e-03	k: 403	n:180000
KS ci ratio: 1.507349e-02	ci left: 2.710481e-01	ci right 2.751703e-01	k: 49159	n:180000
SLC22A16   180000 perm   45 sec   (3979 perm/sec)   p_kst 2.731056e-01   p_cons 2.238889e-03   p_joint 8.027778e-03

Joint ci ratio: 1.003759e-01	ci left: 7.563267e-03	ci right 8.367643e-03	k: 1512	n:190000
Cons ci ratio: 1.886050e-01	ci left: 2.054486e-03	ci right 2.487240e-03	k: 430	n:190000
KS ci ratio: 1.467031e-02	ci left: 2.711342e-01	ci right 2.751464e-01	k: 51896	n:190000
SLC22A16   190000 perm   48 sec   (3925 perm/sec)   p_kst 2.731368e-01   p_cons 2.263158e-03   p_joint 7.957895e-03

Joint ci ratio: 9.825909e-02	ci left: 7.506896e-03	ci right 8.287469e-03	k: 1578	n:200000
Cons ci ratio: 1.849946e-01	ci left: 2.032785e-03	ci right 2.451851e-03	k: 447	n:200000
KS ci ratio: 1.428652e-02	ci left: 2.715273e-01	ci right 2.754393e-01	k: 54696	n:200000
SLC22A16   200000 perm   52 sec   (3872 perm/sec)   p_kst 2.734800e-01   p_cons 2.235000e-03   p_joint 7.890000e-03

Joint ci ratio: 9.799671e-02	ci left: 7.191173e-03	ci right 7.936803e-03	k: 1587	n:210000
Cons ci ratio: 1.796580e-01	ci left: 2.058692e-03	ci right 2.469526e-03	k: 474	n:210000
KS ci ratio: 1.394553e-02	ci left: 2.714802e-01	ci right 2.752975e-01	k: 57411	n:210000
SLC22A16   210000 perm   55 sec   (3821 perm/sec)   p_kst 2.733857e-01   p_cons 2.257143e-03   p_joint 7.557143e-03

Joint ci ratio: 8.568990e-02	ci left: 9.018769e-03	ci right 9.830598e-03	k: 2072	n:220000
Cons ci ratio: 1.749328e-01	ci left: 2.078055e-03	ci right 2.480693e-03	k: 500	n:220000
KS ci ratio: 1.384073e-02	ci left: 2.653382e-01	ci right 2.690407e-01	k: 58781	n:220000
SLC22A16   220000 perm   58 sec   (3770 perm/sec)   p_kst 2.671864e-01   p_cons 2.272727e-03   p_joint 9.418182e-03

Joint ci ratio: 8.494594e-02	ci left: 8.784041e-03	ci right 9.567534e-03	k: 2109	n:230000
Cons ci ratio: 1.720405e-01	ci left: 2.058407e-03	ci right 2.449958e-03	k: 517	n:230000
KS ci ratio: 1.353604e-02	ci left: 2.653924e-01	ci right 2.690135e-01	k: 61456	n:230000
SLC22A16   230000 perm   62 sec   (3722 perm/sec)   p_kst 2.672000e-01   p_cons 2.247826e-03   p_joint 9.169565e-03

Joint ci ratio: 7.423993e-02	ci left: 1.105681e-02	ci right 1.191338e-02	k: 2755	n:240000
Cons ci ratio: 1.614596e-01	ci left: 2.252164e-03	ci right 2.651671e-03	k: 587	n:240000
KS ci ratio: 1.324921e-02	ci left: 2.654845e-01	ci right 2.690295e-01	k: 64141	n:240000
SLC22A16   240000 perm   65 sec   (3676 perm/sec)   p_kst 2.672542e-01   p_cons 2.445833e-03   p_joint 1.147917e-02

Joint ci ratio: 6.734320e-02	ci left: 1.292147e-02	ci right 1.382587e-02	k: 3342	n:250000
Cons ci ratio: 1.566036e-01	ci left: 2.304193e-03	ci right 2.699482e-03	k: 624	n:250000
KS ci ratio: 1.297974e-02	ci left: 2.655739e-01	ci right 2.690475e-01	k: 66827	n:250000
SLC22A16   250000 perm   69 sec   (3631 perm/sec)   p_kst 2.673080e-01   p_cons 2.496000e-03   p_joint 1.336800e-02

Joint ci ratio: 6.775191e-02	ci left: 1.228066e-02	ci right 1.314563e-02	k: 3304	n:260000
Cons ci ratio: 1.536810e-01	ci left: 2.304294e-03	ci right 2.691544e-03	k: 648	n:260000
KS ci ratio: 1.273908e-02	ci left: 2.652580e-01	ci right 2.686626e-01	k: 69409	n:260000
SLC22A16   260000 perm   72 sec   (3586 perm/sec)   p_kst 2.669577e-01   p_cons 2.492308e-03   p_joint 1.270769e-02

Joint ci ratio: 6.384393e-02	ci left: 1.333053e-02	ci right 1.421329e-02	k: 3717	n:270000
Cons ci ratio: 1.504686e-01	ci left: 2.318709e-03	ci right 2.699503e-03	k: 676	n:270000
KS ci ratio: 1.250528e-02	ci left: 2.651546e-01	ci right 2.684949e-01	k: 72042	n:270000
SLC22A16   270000 perm   76 sec   (3543 perm/sec)   p_kst 2.668222e-01   p_cons 2.503704e-03   p_joint 1.376667e-02

Joint ci ratio: 6.296481e-02	ci left: 1.322347e-02	ci right 1.408664e-02	k: 3822	n:280000
Cons ci ratio: 1.474495e-01	ci left: 2.332172e-03	ci right 2.706815e-03	k: 704	n:280000
KS ci ratio: 1.228637e-02	ci left: 2.649806e-01	ci right 2.682599e-01	k: 74653	n:280000
SLC22A16   280000 perm   80 sec   (3500 perm/sec)   p_kst 2.666179e-01   p_cons 2.514286e-03   p_joint 1.365000e-02

Joint ci ratio: 6.371861e-02	ci left: 1.247208e-02	ci right 1.329631e-02	k: 3735	n:290000
Cons ci ratio: 1.456043e-01	ci left: 2.311544e-03	ci right 2.677822e-03	k: 722	n:290000
KS ci ratio: 1.207685e-02	ci left: 2.648743e-01	ci right 2.680959e-01	k: 77280	n:290000
SLC22A16   290000 perm   84 sec   (3458 perm/sec)   p_kst 2.664828e-01   p_cons 2.489655e-03   p_joint 1.287931e-02

Joint ci ratio: 5.678457e-02	ci left: 1.519244e-02	ci right 1.608362e-02	k: 4690	n:300000
Cons ci ratio: 1.424835e-01	ci left: 2.337317e-03	ci right 2.699066e-03	k: 754	n:300000
KS ci ratio: 1.187648e-02	ci left: 2.648153e-01	ci right 2.679825e-01	k: 79919	n:300000
SLC22A16   300000 perm   88 sec   (3416 perm/sec)   p_kst 2.663967e-01   p_cons 2.513333e-03   p_joint 1.563333e-02

Joint ci ratio: 5.511718e-02	ci left: 1.561213e-02	ci right 1.650018e-02	k: 4976	n:310000
Cons ci ratio: 1.406342e-01	ci left: 2.324150e-03	ci right 2.678801e-03	k: 774	n:310000
KS ci ratio: 1.167854e-02	ci left: 2.650022e-01	ci right 2.681183e-01	k: 82633	n:310000
SLC22A16   310000 perm   92 sec   (3377 perm/sec)   p_kst 2.665581e-01   p_cons 2.496774e-03   p_joint 1.605161e-02

Joint ci ratio: 5.530646e-02	ci left: 1.502859e-02	ci right 1.588647e-02	k: 4945	n:320000
Cons ci ratio: 1.373902e-01	ci left: 2.363128e-03	ci right 2.714728e-03	k: 811	n:320000
KS ci ratio: 1.148696e-02	ci left: 2.652869e-01	ci right 2.683549e-01	k: 85382	n:320000
SLC22A16   320000 perm   96 sec   (3338 perm/sec)   p_kst 2.668187e-01   p_cons 2.534375e-03   p_joint 1.545312e-02

Joint ci ratio: 5.446509e-02	ci left: 1.503344e-02	ci right 1.587813e-02	k: 5099	n:330000
Cons ci ratio: 1.355667e-01	ci left: 2.355907e-03	ci right 2.701406e-03	k: 833	n:330000
KS ci ratio: 1.130284e-02	ci left: 2.656121e-01	ci right 2.686344e-01	k: 88150	n:330000
SLC22A16   330000 perm   100 sec   (3299 perm/sec)   p_kst 2.671212e-01   p_cons 2.524242e-03   p_joint 1.545152e-02

Joint ci ratio: 5.364543e-02	ci left: 1.504681e-02	ci right 1.587913e-02	k: 5256	n:340000
Cons ci ratio: 1.338923e-01	ci left: 2.346298e-03	ci right 2.685799e-03	k: 854	n:340000
KS ci ratio: 1.113055e-02	ci left: 2.658042e-01	ci right 2.687822e-01	k: 90879	n:340000
SLC22A16   340000 perm   104 sec   (3261 perm/sec)   p_kst 2.672912e-01   p_cons 2.511765e-03   p_joint 1.545882e-02

Joint ci ratio: 5.499507e-02	ci left: 1.391491e-02	ci right 1.470459e-02	k: 5007	n:350000
Cons ci ratio: 1.319016e-01	ci left: 2.351077e-03	ci right 2.685816e-03	k: 880	n:350000
KS ci ratio: 1.096463e-02	ci left: 2.660312e-01	ci right 2.689670e-01	k: 93624	n:350000
SLC22A16   350000 perm   109 sec   (3225 perm/sec)   p_kst 2.674971e-01   p_cons 2.514286e-03   p_joint 1.430571e-02

Joint ci ratio: 6.786263e-02	ci left: 8.871572e-03	ci right 9.497478e-03	k: 3305	n:360000
Cons ci ratio: 1.255640e-01	ci left: 2.530426e-03	ci right 2.872102e-03	k: 971	n:360000
KS ci ratio: 1.080537e-02	ci left: 2.662653e-01	ci right 2.691607e-01	k: 96376	n:360000
SLC22A16   360000 perm   113 sec   (3190 perm/sec)   p_kst 2.677111e-01   p_cons 2.697222e-03   p_joint 9.180556e-03

Joint ci ratio: 6.694758e-02	ci left: 8.873600e-03	ci right 9.490880e-03	k: 3396	n:370000
Cons ci ratio: 1.242302e-01	ci left: 2.517018e-03	ci right 2.853008e-03	k: 992	n:370000
KS ci ratio: 1.065770e-02	ci left: 2.663089e-01	ci right 2.691650e-01	k: 99062	n:370000
SLC22A16   370000 perm   117 sec   (3153 perm/sec)   p_kst 2.677351e-01   p_cons 2.681081e-03   p_joint 9.178378e-03

Joint ci ratio: 6.355129e-02	ci left: 9.598002e-03	ci right 1.023056e-02	k: 3766	n:380000
Cons ci ratio: 1.219175e-01	ci left: 2.547705e-03	ci right 2.881003e-03	k: 1030	n:380000
KS ci ratio: 1.050986e-02	ci left: 2.665764e-01	ci right 2.693955e-01	k: 101834	n:380000
SLC22A16   380000 perm   122 sec   (3119 perm/sec)   p_kst 2.679842e-01   p_cons 2.710526e-03   p_joint 9.910526e-03

Joint ci ratio: 6.078512e-02	ci left: 1.023044e-02	ci right 1.087430e-02	k: 4114	n:390000
Cons ci ratio: 1.205806e-01	ci left: 2.539564e-03	ci right 2.867894e-03	k: 1053	n:390000
KS ci ratio: 1.037389e-02	ci left: 2.666078e-01	ci right 2.693905e-01	k: 104519	n:390000
SLC22A16   390000 perm   126 sec   (3085 perm/sec)   p_kst 2.679974e-01   p_cons 2.700000e-03   p_joint 1.054872e-02

Joint ci ratio: 5.694639e-02	ci left: 1.137398e-02	ci right 1.204312e-02	k: 4682	n:400000
Cons ci ratio: 1.188450e-01	ci left: 2.551255e-03	ci right 2.876015e-03	k: 1084	n:400000
KS ci ratio: 1.024320e-02	ci left: 2.666328e-01	ci right 2.693805e-01	k: 107202	n:400000
SLC22A16   400000 perm   131 sec   (3053 perm/sec)   p_kst 2.680050e-01   p_cons 2.710000e-03   p_joint 1.170500e-02

Joint ci ratio: 5.617117e-02	ci left: 1.140916e-02	ci right 1.207094e-02	k: 4812	n:410000
Cons ci ratio: 1.171296e-01	ci left: 2.564776e-03	ci right 2.886218e-03	k: 1116	n:410000
KS ci ratio: 1.011463e-02	ci left: 2.667616e-01	ci right 2.694759e-01	k: 109928	n:410000
SLC22A16   410000 perm   136 sec   (3022 perm/sec)   p_kst 2.681171e-01   p_cons 2.721951e-03   p_joint 1.173659e-02

Joint ci ratio: 5.638091e-02	ci left: 1.105765e-02	ci right 1.170150e-02	k: 4778	n:420000
Cons ci ratio: 1.159936e-01	ci left: 2.554563e-03	ci right 2.871407e-03	k: 1138	n:420000
KS ci ratio: 9.992531e-03	ci left: 2.668154e-01	ci right 2.694973e-01	k: 112625	n:420000
SLC22A16   420000 perm   140 sec   (2991 perm/sec)   p_kst 2.681548e-01   p_cons 2.709524e-03   p_joint 1.137619e-02

Joint ci ratio: 5.739898e-02	ci left: 1.042213e-02	ci right 1.104030e-02	k: 4613	n:430000
Cons ci ratio: 1.146921e-01	ci left: 2.553875e-03	ci right 2.866840e-03	k: 1164	n:430000
KS ci ratio: 9.876040e-03	ci left: 2.668159e-01	ci right 2.694663e-01	k: 115300	n:430000
SLC22A16   430000 perm   145 sec   (2961 perm/sec)   p_kst 2.681395e-01   p_cons 2.706977e-03   p_joint 1.072791e-02

Joint ci ratio: 5.758288e-02	ci left: 1.012250e-02	ci right 1.072488e-02	k: 4585	n:440000
Cons ci ratio: 1.135770e-01	ci left: 2.546612e-03	ci right 2.855449e-03	k: 1187	n:440000
KS ci ratio: 9.759518e-03	ci left: 2.669776e-01	ci right 2.695982e-01	k: 118046	n:440000
SLC22A16   440000 perm   150 sec   (2930 perm/sec)   p_kst 2.682864e-01   p_cons 2.697727e-03   p_joint 1.042045e-02

Joint ci ratio: 5.839248e-02	ci left: 9.625921e-03	ci right 1.020708e-02	k: 4461	n:450000
Cons ci ratio: 1.124472e-01	ci left: 2.541846e-03	ci right 2.846835e-03	k: 1211	n:450000
KS ci ratio: 9.649644e-03	ci left: 2.670258e-01	ci right 2.696172e-01	k: 120744	n:450000
SLC22A16   450000 perm   155 sec   (2900 perm/sec)   p_kst 2.683200e-01   p_cons 2.691111e-03   p_joint 9.913333e-03

Joint ci ratio: 5.766597e-02	ci left: 9.658754e-03	ci right 1.023440e-02	k: 4574	n:460000
Cons ci ratio: 1.112152e-01	ci left: 2.543642e-03	ci right 2.845284e-03	k: 1238	n:460000
KS ci ratio: 9.543611e-03	ci left: 2.670634e-01	ci right 2.696265e-01	k: 123438	n:460000
SLC22A16   460000 perm   160 sec   (2871 perm/sec)   p_kst 2.683435e-01   p_cons 2.691304e-03   p_joint 9.943478e-03

Joint ci ratio: 5.608438e-02	ci left: 9.998622e-03	ci right 1.057765e-02	k: 4834	n:470000
Cons ci ratio: 1.096328e-01	ci left: 2.564004e-03	ci right 2.863455e-03	k: 1274	n:470000
KS ci ratio: 9.439464e-03	ci left: 2.671633e-01	ci right 2.696992e-01	k: 126162	n:470000
SLC22A16   470000 perm   165 sec   (2841 perm/sec)   p_kst 2.684298e-01   p_cons 2.710638e-03   p_joint 1.028511e-02

Joint ci ratio: 5.550205e-02	ci left: 9.999853e-03	ci right 1.057275e-02	k: 4936	n:480000
Cons ci ratio: 1.086996e-01	ci left: 2.555169e-03	ci right 2.850885e-03	k: 1296	n:480000
KS ci ratio: 9.343211e-03	ci left: 2.670677e-01	ci right 2.695767e-01	k: 128794	n:480000
SLC22A16   480000 perm   171 sec   (2806 perm/sec)   p_kst 2.683208e-01   p_cons 2.700000e-03   p_joint 1.028333e-02

Joint ci ratio: 5.492648e-02	ci left: 1.000509e-02	ci right 1.057215e-02	k: 5040	n:490000
Cons ci ratio: 1.076672e-01	ci left: 2.552662e-03	ci right 2.845104e-03	k: 1321	n:490000
KS ci ratio: 9.249555e-03	ci left: 2.669884e-01	ci right 2.694714e-01	k: 131432	n:490000
SLC22A16   490000 perm   176 sec   (2779 perm/sec)   p_kst 2.682286e-01   p_cons 2.695918e-03   p_joint 1.028571e-02

Joint ci ratio: 5.442727e-02	ci left: 9.988443e-03	ci right 1.054925e-02	k: 5133	n:500000
Cons ci ratio: 1.064656e-01	ci left: 2.560002e-03	ci right 2.849808e-03	k: 1351	n:500000
KS ci ratio: 9.159454e-03	ci left: 2.668785e-01	ci right 2.693362e-01	k: 134053	n:500000
SLC22A16   500000 perm   182 sec   (2753 perm/sec)   p_kst 2.681060e-01   p_cons 2.702000e-03   p_joint 1.026600e-02

Joint ci ratio: 5.398317e-02	ci left: 9.956994e-03	ci right 1.051134e-02	k: 5218	n:510000
Cons ci ratio: 1.056103e-01	ci left: 2.551799e-03	ci right 2.838211e-03	k: 1373	n:510000
KS ci ratio: 9.068852e-03	ci left: 2.669061e-01	ci right 2.693396e-01	k: 136742	n:510000
SLC22A16   510000 perm   187 sec   (2727 perm/sec)   p_kst 2.681216e-01   p_cons 2.692157e-03   p_joint 1.023137e-02

Joint ci ratio: 5.730266e-02	ci left: 8.663569e-03	ci right 9.176540e-03	k: 4637	n:520000
Cons ci ratio: 1.045130e-01	ci left: 2.557030e-03	ci right 2.840864e-03	k: 1402	n:520000
KS ci ratio: 9.127138e-03	ci left: 2.606497e-01	ci right 2.630414e-01	k: 136159	n:520000
SLC22A16   520000 perm   192 sec   (2702 perm/sec)   p_kst 2.618442e-01   p_cons 2.696154e-03   p_joint 8.917308e-03

Joint ci ratio: 5.757740e-02	ci left: 8.420108e-03	ci right 8.921134e-03	k: 4594	n:530000
Cons ci ratio: 1.034853e-01	ci left: 2.560240e-03	ci right 2.841466e-03	k: 1430	n:530000
KS ci ratio: 9.040996e-03	ci left: 2.606451e-01	ci right 2.630141e-01	k: 138769	n:530000
SLC22A16   530000 perm   198 sec   (2672 perm/sec)   p_kst 2.618283e-01   p_cons 2.698113e-03   p_joint 8.667925e-03

Joint ci ratio: 5.733092e-02	ci left: 8.337180e-03	ci right 8.831077e-03	k: 4634	n:540000
Cons ci ratio: 1.027703e-01	ci left: 2.548909e-03	ci right 2.826839e-03	k: 1450	n:540000
KS ci ratio: 8.956176e-03	ci left: 2.606870e-01	ci right 2.630341e-01	k: 141404	n:540000
SLC22A16   540000 perm   204 sec   (2648 perm/sec)   p_kst 2.618593e-01   p_cons 2.685185e-03   p_joint 8.581481e-03

Joint ci ratio: 5.680026e-02	ci left: 8.341520e-03	ci right 8.830950e-03	k: 4721	n:550000
Cons ci ratio: 1.017583e-01	ci left: 2.553945e-03	ci right 2.829517e-03	k: 1479	n:550000
KS ci ratio: 8.873365e-03	ci left: 2.607420e-01	ci right 2.630678e-01	k: 144047	n:550000
SLC22A16   550000 perm   210 sec   (2617 perm/sec)   p_kst 2.619036e-01   p_cons 2.689091e-03   p_joint 8.583636e-03

Joint ci ratio: 5.646198e-02	ci left: 8.292903e-03	ci right 8.776488e-03	k: 4778	n:560000
Cons ci ratio: 1.008761e-01	ci left: 2.553591e-03	ci right 2.826595e-03	k: 1505	n:560000
KS ci ratio: 8.793540e-03	ci left: 2.607631e-01	ci right 2.630680e-01	k: 146672	n:560000
SLC22A16   560000 perm   216 sec   (2589 perm/sec)   p_kst 2.619143e-01   p_cons 2.687500e-03   p_joint 8.532143e-03

Joint ci ratio: 5.429676e-02	ci left: 8.815295e-03	ci right 9.309012e-03	k: 5164	n:570000
Cons ci ratio: 9.985330e-02	ci left: 2.561812e-03	ci right 2.832756e-03	k: 1536	n:570000
KS ci ratio: 8.717137e-03	ci left: 2.607257e-01	ci right 2.630101e-01	k: 149264	n:570000
SLC22A16   570000 perm   222 sec   (2566 perm/sec)   p_kst 2.618667e-01   p_cons 2.694737e-03   p_joint 9.059649e-03

Outputting figure to mutsig2_images.part000000000159/SLC22A16.6_1766_570000_0.26187_0.0026947_0.0090596.png
                gene_name: SLC22A16
               theta_stop: 0.100 
                    nperm: 570000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.0027 
      ci_cons_bounds_left: 0.0026 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0093 

Current progress: 18 percent done.
SLC24A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
SLC24A2   10000 perm   1 sec   (6797 perm/sec)   p_kst 2.509000e-01   p_cons 9.360000e-02   p_joint 1.564000e-01

Joint ci ratio: 6.778656e-02	ci left: 1.383726e-01	ci right 1.481313e-01	k: 2864	n:20000
Cons ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
KS ci ratio: 4.763488e-02	ci left: 2.468871e-01	ci right 2.589848e-01	k: 5058	n:20000
SLC24A2   20000 perm   3 sec   (5992 perm/sec)   p_kst 2.529000e-01   p_cons 8.830000e-02   p_joint 1.432000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A2.6_2026_20000_0.2529_0.0883_0.1432.png
                gene_name: SLC24A2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 20 percent done.
SLC24A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
SLC24A3   10000 perm   2 sec   (5932 perm/sec)   p_kst 1.000000e-03   p_cons 8.611000e-01   p_joint 1.460000e-02

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 1.076776e-02	ci left: 8.641438e-01	ci right 8.735487e-01	k: 17378	n:20000
KS ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
SLC24A3   20000 perm   4 sec   (5290 perm/sec)   p_kst 1.000000e-03   p_cons 8.689000e-01   p_joint 5.750000e-03

Joint ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
Cons ci ratio: 8.817285e-03	ci left: 8.643536e-01	ci right 8.720417e-01	k: 26047	n:30000
KS ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
SLC24A3   30000 perm   6 sec   (5051 perm/sec)   p_kst 8.666667e-04   p_cons 8.682333e-01   p_joint 2.600000e-03

Joint ci ratio: 3.995980e-01	ci left: 1.921929e-03	ci right 2.902547e-03	k: 95	n:40000
Cons ci ratio: 7.652003e-03	ci left: 8.643910e-01	ci right 8.710555e-01	k: 34710	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
SLC24A3   40000 perm   8 sec   (4886 perm/sec)   p_kst 8.250000e-04   p_cons 8.677500e-01   p_joint 2.375000e-03

Joint ci ratio: 3.683420e-01	ci left: 1.844756e-03	ci right 2.694688e-03	k: 112	n:50000
Cons ci ratio: 6.835452e-03	ci left: 8.650421e-01	ci right 8.709951e-01	k: 43402	n:50000
KS ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
SLC24A3   50000 perm   10 sec   (4791 perm/sec)   p_kst 9.600000e-04   p_cons 8.680400e-01   p_joint 2.240000e-03

Joint ci ratio: 2.028844e-01	ci left: 5.555911e-03	ci right 6.825899e-03	k: 370	n:60000
Cons ci ratio: 6.239123e-03	ci left: 8.653327e-01	ci right 8.707650e-01	k: 52084	n:60000
KS ci ratio: 5.189657e-01	ci left: 7.051046e-04	ci right 1.211842e-03	k: 56	n:60000
SLC24A3   60000 perm   13 sec   (4709 perm/sec)   p_kst 9.333333e-04   p_cons 8.680667e-01   p_joint 6.166667e-03

Joint ci ratio: 2.136579e-01	ci left: 4.274417e-03	ci right 5.310147e-03	k: 334	n:70000
Cons ci ratio: 5.786964e-03	ci left: 8.651101e-01	ci right 8.701451e-01	k: 60735	n:70000
KS ci ratio: 4.682920e-01	ci left: 7.670230e-04	ci right 1.247321e-03	k: 69	n:70000
SLC24A3   70000 perm   15 sec   (4631 perm/sec)   p_kst 9.857143e-04   p_cons 8.676429e-01   p_joint 4.771429e-03

Joint ci ratio: 1.417038e-01	ci left: 8.803211e-03	ci right 1.015772e-02	k: 757	n:80000
Cons ci ratio: 5.427156e-03	ci left: 8.646777e-01	ci right 8.693956e-01	k: 69364	n:80000
KS ci ratio: 4.554771e-01	ci left: 7.153204e-04	ci right 1.147197e-03	k: 73	n:80000
SLC24A3   80000 perm   18 sec   (4555 perm/sec)   p_kst 9.125000e-04   p_cons 8.670500e-01   p_joint 9.462500e-03

Joint ci ratio: 1.441969e-01	ci left: 7.556877e-03	ci right 8.741820e-03	k: 732	n:90000
Cons ci ratio: 5.119349e-03	ci left: 8.646970e-01	ci right 8.691460e-01	k: 78024	n:90000
KS ci ratio: 4.176667e-01	ci left: 7.743306e-04	ci right 1.192245e-03	k: 87	n:90000
SLC24A3   90000 perm   20 sec   (4484 perm/sec)   p_kst 9.666667e-04   p_cons 8.669333e-01   p_joint 8.133333e-03

Joint ci ratio: 1.474299e-01	ci left: 6.502234e-03	ci right 7.546667e-03	k: 701	n:100000
Cons ci ratio: 4.869954e-03	ci left: 8.641750e-01	ci right 8.684037e-01	k: 86630	n:100000
KS ci ratio: 3.957837e-01	ci left: 7.866729e-04	ci right 1.183192e-03	k: 97	n:100000
SLC24A3   100000 perm   23 sec   (4414 perm/sec)   p_kst 9.700000e-04   p_cons 8.663000e-01   p_joint 7.010000e-03

Joint ci ratio: 1.455085e-01	ci left: 6.077420e-03	ci right 7.039783e-03	k: 720	n:110000
Cons ci ratio: 4.645680e-03	ci left: 8.641557e-01	ci right 8.681886e-01	k: 95280	n:110000
KS ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
SLC24A3   110000 perm   25 sec   (4349 perm/sec)   p_kst 9.727273e-04   p_cons 8.661818e-01   p_joint 6.545455e-03

Joint ci ratio: 1.576634e-01	ci left: 4.720818e-03	ci right 5.536713e-03	k: 614	n:120000
Cons ci ratio: 4.445307e-03	ci left: 8.643782e-01	ci right 8.682374e-01	k: 103958	n:120000
KS ci ratio: 3.653652e-01	ci left: 7.836948e-04	ci right 1.141131e-03	k: 114	n:120000
SLC24A3   120000 perm   28 sec   (4284 perm/sec)   p_kst 9.500000e-04   p_cons 8.663167e-01   p_joint 5.116667e-03

Joint ci ratio: 1.767528e-01	ci left: 3.436035e-03	ci right 4.109474e-03	k: 489	n:130000
Cons ci ratio: 4.271216e-03	ci left: 8.644380e-01	ci right 8.681457e-01	k: 112619	n:130000
KS ci ratio: 3.532859e-01	ci left: 7.793946e-04	ci right 1.120422e-03	k: 122	n:130000
SLC24A3   130000 perm   31 sec   (4221 perm/sec)   p_kst 9.384615e-04   p_cons 8.663000e-01   p_joint 3.761538e-03

Joint ci ratio: 1.581093e-01	ci left: 4.025718e-03	ci right 4.723626e-03	k: 611	n:140000
Cons ci ratio: 4.116604e-03	ci left: 8.644630e-01	ci right 8.680361e-01	k: 121276	n:140000
KS ci ratio: 3.397444e-01	ci left: 7.889387e-04	ci right 1.118010e-03	k: 132	n:140000
SLC24A3   140000 perm   34 sec   (4160 perm/sec)   p_kst 9.428571e-04   p_cons 8.662571e-01   p_joint 4.364286e-03

Joint ci ratio: 1.546202e-01	ci left: 3.936685e-03	ci right 4.602701e-03	k: 639	n:150000
Cons ci ratio: 3.981426e-03	ci left: 8.642657e-01	ci right 8.677202e-01	k: 129900	n:150000
KS ci ratio: 3.276495e-01	ci left: 7.974263e-04	ci right 1.115706e-03	k: 142	n:150000
SLC24A3   150000 perm   37 sec   (4095 perm/sec)   p_kst 9.466667e-04   p_cons 8.660000e-01   p_joint 4.260000e-03

Joint ci ratio: 1.601348e-01	ci left: 3.432401e-03	ci right 4.035802e-03	k: 596	n:160000
Cons ci ratio: 3.860393e-03	ci left: 8.639944e-01	ci right 8.673424e-01	k: 138508	n:160000
KS ci ratio: 3.157296e-01	ci left: 8.107888e-04	ci right 1.120254e-03	k: 153	n:160000
SLC24A3   160000 perm   40 sec   (4035 perm/sec)   p_kst 9.562500e-04   p_cons 8.656750e-01   p_joint 3.725000e-03

Joint ci ratio: 1.547806e-01	ci left: 3.467825e-03	ci right 4.055180e-03	k: 638	n:170000
Cons ci ratio: 3.746053e-03	ci left: 8.639872e-01	ci right 8.672356e-01	k: 147155	n:170000
KS ci ratio: 3.059520e-01	ci left: 8.173322e-04	ci right 1.117753e-03	k: 163	n:170000
SLC24A3   170000 perm   43 sec   (3977 perm/sec)   p_kst 9.588235e-04   p_cons 8.656176e-01   p_joint 3.752941e-03

Joint ci ratio: 1.741924e-01	ci left: 2.561153e-03	ci right 3.055077e-03	k: 504	n:180000
Cons ci ratio: 3.643217e-03	ci left: 8.638593e-01	ci right 8.670178e-01	k: 155780	n:180000
KS ci ratio: 2.996266e-01	ci left: 8.078592e-04	ci right 1.097491e-03	k: 170	n:180000
SLC24A3   180000 perm   46 sec   (3925 perm/sec)   p_kst 9.444444e-04   p_cons 8.654444e-01   p_joint 2.800000e-03

Joint ci ratio: 1.756054e-01	ci left: 2.386074e-03	ci right 2.850361e-03	k: 496	n:190000
Cons ci ratio: 3.544959e-03	ci left: 8.639735e-01	ci right 8.670469e-01	k: 164448	n:190000
KS ci ratio: 2.904298e-01	ci left: 8.189522e-04	ci right 1.101894e-03	k: 181	n:190000
SLC24A3   190000 perm   49 sec   (3872 perm/sec)   p_kst 9.526316e-04   p_cons 8.655158e-01   p_joint 2.610526e-03

Joint ci ratio: 1.804108e-01	ci left: 2.142537e-03	ci right 2.572090e-03	k: 470	n:200000
Cons ci ratio: 3.454541e-03	ci left: 8.640572e-01	ci right 8.670522e-01	k: 173112	n:200000
KS ci ratio: 2.842509e-01	ci left: 8.151221e-04	ci right 1.089674e-03	k: 189	n:200000
SLC24A3   200000 perm   52 sec   (3820 perm/sec)   p_kst 9.450000e-04   p_cons 8.655600e-01   p_joint 2.350000e-03

Joint ci ratio: 1.170296e-01	ci left: 5.003166e-03	ci right 5.629655e-03	k: 1115	n:210000
Cons ci ratio: 3.373258e-03	ci left: 8.639568e-01	ci right 8.668808e-01	k: 181739	n:210000
KS ci ratio: 2.763625e-01	ci left: 8.250072e-04	ci right 1.093837e-03	k: 200	n:210000
SLC24A3   210000 perm   56 sec   (3771 perm/sec)   p_kst 9.523810e-04   p_cons 8.654238e-01   p_joint 5.309524e-03

Joint ci ratio: 1.293922e-01	ci left: 3.885646e-03	ci right 4.427547e-03	k: 913	n:220000
Cons ci ratio: 3.294107e-03	ci left: 8.641037e-01	ci right 8.669594e-01	k: 190418	n:220000
KS ci ratio: 2.678347e-01	ci left: 8.425686e-04	ci right 1.107227e-03	k: 213	n:220000
SLC24A3   220000 perm   59 sec   (3721 perm/sec)   p_kst 9.681818e-04   p_cons 8.655364e-01   p_joint 4.150000e-03

Joint ci ratio: 1.359014e-01	ci left: 3.359333e-03	ci right 3.853307e-03	k: 828	n:230000
Cons ci ratio: 3.222082e-03	ci left: 8.641076e-01	ci right 8.669006e-01	k: 199067	n:230000
KS ci ratio: 2.653695e-01	ci left: 8.221630e-04	ci right 1.077640e-03	k: 217	n:230000
SLC24A3   230000 perm   63 sec   (3676 perm/sec)   p_kst 9.434783e-04   p_cons 8.655087e-01   p_joint 3.600000e-03

Joint ci ratio: 1.331979e-01	ci left: 3.356259e-03	ci right 3.839185e-03	k: 862	n:240000
Cons ci ratio: 3.156672e-03	ci left: 8.639569e-01	ci right 8.666926e-01	k: 207679	n:240000
KS ci ratio: 2.606312e-01	ci left: 8.190420e-04	ci right 1.068264e-03	k: 225	n:240000
SLC24A3   240000 perm   66 sec   (3631 perm/sec)   p_kst 9.375000e-04   p_cons 8.653292e-01   p_joint 3.591667e-03

Joint ci ratio: 1.312384e-01	ci left: 3.322564e-03	ci right 3.793061e-03	k: 888	n:250000
Cons ci ratio: 3.093705e-03	ci left: 8.639234e-01	ci right 8.666042e-01	k: 216317	n:250000
KS ci ratio: 2.577974e-01	ci left: 8.049802e-04	ci right 1.046831e-03	k: 230	n:250000
SLC24A3   250000 perm   70 sec   (3588 perm/sec)   p_kst 9.200000e-04   p_cons 8.652680e-01   p_joint 3.552000e-03

Joint ci ratio: 1.344730e-01	ci left: 3.038573e-03	ci right 3.480307e-03	k: 846	n:260000
Cons ci ratio: 3.033411e-03	ci left: 8.639663e-01	ci right 8.665948e-01	k: 224974	n:260000
KS ci ratio: 2.534467e-01	ci left: 8.028173e-04	ci right 1.039305e-03	k: 238	n:260000
SLC24A3   260000 perm   73 sec   (3545 perm/sec)   p_kst 9.153846e-04   p_cons 8.652846e-01   p_joint 3.253846e-03

Joint ci ratio: 1.406991e-01	ci left: 2.664928e-03	ci right 3.071785e-03	k: 773	n:270000
Cons ci ratio: 2.977597e-03	ci left: 8.639209e-01	ci right 8.665008e-01	k: 233608	n:270000
KS ci ratio: 2.513545e-01	ci left: 7.869602e-04	ci right 1.016564e-03	k: 242	n:270000
SLC24A3   270000 perm   77 sec   (3504 perm/sec)   p_kst 8.962963e-04   p_cons 8.652148e-01   p_joint 2.862963e-03

Joint ci ratio: 1.411643e-01	ci left: 2.552514e-03	ci right 2.943605e-03	k: 768	n:280000
Cons ci ratio: 2.923814e-03	ci left: 8.639546e-01	ci right 8.664878e-01	k: 242263	n:280000
KS ci ratio: 2.503296e-01	ci left: 7.655472e-04	ci right 9.878503e-04	k: 244	n:280000
SLC24A3   280000 perm   81 sec   (3464 perm/sec)   p_kst 8.714286e-04   p_cons 8.652250e-01   p_joint 2.742857e-03

Joint ci ratio: 1.455034e-01	ci left: 2.314867e-03	ci right 2.681395e-03	k: 723	n:290000
Cons ci ratio: 2.872759e-03	ci left: 8.639932e-01	ci right 8.664822e-01	k: 250920	n:290000
KS ci ratio: 2.463403e-01	ci left: 7.650186e-04	ci right 9.830860e-04	k: 252	n:290000
SLC24A3   290000 perm   85 sec   (3425 perm/sec)   p_kst 8.689655e-04   p_cons 8.652414e-01   p_joint 2.493103e-03

Joint ci ratio: 1.422006e-01	ci left: 2.346962e-03	ci right 2.709421e-03	k: 757	n:300000
Cons ci ratio: 2.824046e-03	ci left: 8.640497e-01	ci right 8.664966e-01	k: 259583	n:300000
KS ci ratio: 2.393447e-01	ci left: 7.864772e-04	ci right 1.003351e-03	k: 267	n:300000
SLC24A3   300000 perm   89 sec   (3385 perm/sec)   p_kst 8.900000e-04   p_cons 8.652767e-01   p_joint 2.523333e-03

Joint ci ratio: 1.398226e-01	ci left: 2.352166e-03	ci right 2.708848e-03	k: 783	n:310000
Cons ci ratio: 2.777422e-03	ci left: 8.641288e-01	ci right 8.665354e-01	k: 268254	n:310000
KS ci ratio: 2.325023e-01	ci left: 8.096709e-04	ci right 1.025641e-03	k: 283	n:310000
SLC24A3   310000 perm   93 sec   (3343 perm/sec)   p_kst 9.129032e-04   p_cons 8.653355e-01   p_joint 2.525806e-03

Joint ci ratio: 1.410050e-01	ci left: 2.239454e-03	ci right 2.582157e-03	k: 770	n:320000
Cons ci ratio: 2.733509e-03	ci left: 8.641624e-01	ci right 8.665309e-01	k: 276912	n:320000
KS ci ratio: 2.304837e-01	ci left: 7.990871e-04	ci right 1.010120e-03	k: 288	n:320000
SLC24A3   320000 perm   97 sec   (3306 perm/sec)   p_kst 9.000000e-04   p_cons 8.653500e-01   p_joint 2.406250e-03

Joint ci ratio: 1.428798e-01	ci left: 2.113128e-03	ci right 2.441165e-03	k: 750	n:330000
Cons ci ratio: 2.690881e-03	ci left: 8.642582e-01	ci right 8.665899e-01	k: 285591	n:330000
KS ci ratio: 2.250944e-01	ci left: 8.148768e-04	ci right 1.024350e-03	k: 302	n:330000
SLC24A3   330000 perm   101 sec   (3270 perm/sec)   p_kst 9.151515e-04   p_cons 8.654273e-01   p_joint 2.272727e-03

Joint ci ratio: 1.406498e-01	ci left: 2.119062e-03	ci right 2.442456e-03	k: 774	n:340000
Cons ci ratio: 2.651157e-03	ci left: 8.642630e-01	ci right 8.665602e-01	k: 294241	n:340000
KS ci ratio: 2.211159e-01	ci left: 8.214553e-04	ci right 1.028379e-03	k: 313	n:340000
SLC24A3   340000 perm   105 sec   (3234 perm/sec)   p_kst 9.205882e-04   p_cons 8.654147e-01   p_joint 2.276471e-03

Joint ci ratio: 1.382611e-01	ci left: 2.132970e-03	ci right 2.452503e-03	k: 801	n:350000
Cons ci ratio: 2.613750e-03	ci left: 8.642132e-01	ci right 8.664778e-01	k: 302872	n:350000
KS ci ratio: 2.156868e-01	ci left: 8.412001e-04	ci right 1.047207e-03	k: 329	n:350000
SLC24A3   350000 perm   109 sec   (3199 perm/sec)   p_kst 9.400000e-04   p_cons 8.653486e-01   p_joint 2.288571e-03

Joint ci ratio: 1.382656e-01	ci left: 2.073716e-03	ci right 2.384383e-03	k: 801	n:360000
Cons ci ratio: 2.576899e-03	ci left: 8.642557e-01	ci right 8.664884e-01	k: 311535	n:360000
KS ci ratio: 2.118683e-01	ci left: 8.493826e-04	ci right 1.053232e-03	k: 341	n:360000
SLC24A3   360000 perm   114 sec   (3165 perm/sec)   p_kst 9.472222e-04   p_cons 8.653750e-01   p_joint 2.225000e-03

Joint ci ratio: 1.361591e-01	ci left: 2.082919e-03	ci right 2.389825e-03	k: 826	n:370000
Cons ci ratio: 2.543127e-03	ci left: 8.641523e-01	ci right 8.663554e-01	k: 320145	n:370000
KS ci ratio: 2.076593e-01	ci left: 8.622773e-04	ci right 1.064588e-03	k: 355	n:370000
SLC24A3   370000 perm   118 sec   (3132 perm/sec)   p_kst 9.594595e-04   p_cons 8.652568e-01   p_joint 2.232432e-03

Joint ci ratio: 1.347019e-01	ci left: 2.073868e-03	ci right 2.375908e-03	k: 844	n:380000
Cons ci ratio: 2.510959e-03	ci left: 8.640256e-01	ci right 8.662004e-01	k: 328744	n:380000
KS ci ratio: 2.045232e-01	ci left: 8.670396e-04	ci right 1.067012e-03	k: 366	n:380000
SLC24A3   380000 perm   123 sec   (3099 perm/sec)   p_kst 9.631579e-04   p_cons 8.651158e-01   p_joint 2.221053e-03

Joint ci ratio: 1.370836e-01	ci left: 1.948852e-03	ci right 2.238113e-03	k: 815	n:390000
Cons ci ratio: 2.479379e-03	ci left: 8.639621e-01	ci right 8.661094e-01	k: 337365	n:390000
KS ci ratio: 2.020608e-01	ci left: 8.667100e-04	ci right 1.063902e-03	k: 375	n:390000
SLC24A3   390000 perm   127 sec   (3066 perm/sec)   p_kst 9.615385e-04   p_cons 8.650385e-01   p_joint 2.089744e-03

Joint ci ratio: 1.350301e-01	ci left: 1.960504e-03	ci right 2.246785e-03	k: 840	n:400000
Cons ci ratio: 2.447047e-03	ci left: 8.640851e-01	ci right 8.662046e-01	k: 346059	n:400000
KS ci ratio: 1.991681e-01	ci left: 8.711612e-04	ci right 1.066184e-03	k: 386	n:400000
SLC24A3   400000 perm   132 sec   (3033 perm/sec)   p_kst 9.650000e-04   p_cons 8.651475e-01   p_joint 2.100000e-03

Joint ci ratio: 1.327592e-01	ci left: 1.981051e-03	ci right 2.265083e-03	k: 869	n:410000
Cons ci ratio: 2.416881e-03	ci left: 8.641117e-01	ci right 8.662051e-01	k: 354716	n:410000
KS ci ratio: 1.963962e-01	ci left: 8.754143e-04	ci right 1.068336e-03	k: 397	n:410000
SLC24A3   410000 perm   137 sec   (3001 perm/sec)   p_kst 9.682927e-04   p_cons 8.651610e-01   p_joint 2.119512e-03

Joint ci ratio: 1.240001e-01	ci left: 2.226581e-03	ci right 2.523208e-03	k: 996	n:420000
Cons ci ratio: 2.386804e-03	ci left: 8.642351e-01	ci right 8.663027e-01	k: 363414	n:420000
KS ci ratio: 1.944520e-01	ci left: 8.726866e-04	ci right 1.062878e-03	k: 405	n:420000
SLC24A3   420000 perm   141 sec   (2970 perm/sec)   p_kst 9.642857e-04   p_cons 8.652714e-01   p_joint 2.371429e-03

Joint ci ratio: 1.228965e-01	ci left: 2.215367e-03	ci right 2.507683e-03	k: 1014	n:430000
Cons ci ratio: 2.360151e-03	ci left: 8.641220e-01	ci right 8.661661e-01	k: 372013	n:430000
KS ci ratio: 1.921006e-01	ci left: 8.745222e-04	ci right 1.062539e-03	k: 415	n:430000
SLC24A3   430000 perm   146 sec   (2937 perm/sec)   p_kst 9.651163e-04   p_cons 8.651465e-01   p_joint 2.358140e-03

Joint ci ratio: 1.227786e-01	ci left: 2.169420e-03	ci right 2.455379e-03	k: 1016	n:440000
Cons ci ratio: 2.333892e-03	ci left: 8.640620e-01	ci right 8.660832e-01	k: 380633	n:440000
KS ci ratio: 1.905051e-01	ci left: 8.697936e-04	ci right 1.055061e-03	k: 422	n:440000
SLC24A3   440000 perm   151 sec   (2908 perm/sec)   p_kst 9.590909e-04   p_cons 8.650750e-01   p_joint 2.309091e-03

Joint ci ratio: 1.217070e-01	ci left: 2.159987e-03	ci right 2.442038e-03	k: 1034	n:450000
Cons ci ratio: 2.308840e-03	ci left: 8.639691e-01	ci right 8.659684e-01	k: 389237	n:450000
KS ci ratio: 1.896119e-01	ci left: 8.589303e-04	ci right 1.040927e-03	k: 426	n:450000
SLC24A3   450000 perm   156 sec   (2878 perm/sec)   p_kst 9.466667e-04   p_cons 8.649711e-01   p_joint 2.297778e-03

Joint ci ratio: 9.641840e-02	ci left: 3.407752e-03	ci right 3.755068e-03	k: 1646	n:460000
Cons ci ratio: 2.283303e-03	ci left: 8.640113e-01	ci right 8.659885e-01	k: 397901	n:460000
KS ci ratio: 1.874297e-01	ci left: 8.609712e-04	ci right 1.041062e-03	k: 436	n:460000
SLC24A3   460000 perm   161 sec   (2849 perm/sec)   p_kst 9.478261e-04   p_cons 8.650022e-01   p_joint 3.578261e-03

Joint ci ratio: 1.066544e-01	ci left: 2.713063e-03	ci right 3.020775e-03	k: 1346	n:470000
Cons ci ratio: 2.311146e-03	ci left: 8.585737e-01	ci right 8.605623e-01	k: 403998	n:470000
KS ci ratio: 1.853213e-01	ci left: 8.629367e-04	ci right 1.041180e-03	k: 446	n:470000
SLC24A3   470000 perm   167 sec   (2821 perm/sec)   p_kst 9.489362e-04   p_cons 8.595702e-01   p_joint 2.863830e-03

Joint ci ratio: 1.059889e-01	ci left: 2.691015e-03	ci right 2.994203e-03	k: 1363	n:480000
Cons ci ratio: 2.286860e-03	ci left: 8.585931e-01	ci right 8.605609e-01	k: 412598	n:480000
KS ci ratio: 1.832824e-01	ci left: 8.648311e-04	ci right 1.041282e-03	k: 456	n:480000
SLC24A3   480000 perm   172 sec   (2793 perm/sec)   p_kst 9.500000e-04   p_cons 8.595792e-01   p_joint 2.839583e-03

Joint ci ratio: 8.912286e-02	ci left: 3.757334e-03	ci right 4.109796e-03	k: 1926	n:490000
Cons ci ratio: 2.263362e-03	ci left: 8.586078e-01	ci right 8.605553e-01	k: 421196	n:490000
KS ci ratio: 1.809220e-01	ci left: 8.705552e-04	ci right 1.045636e-03	k: 468	n:490000
SLC24A3   490000 perm   177 sec   (2761 perm/sec)   p_kst 9.551020e-04   p_cons 8.595837e-01   p_joint 3.930612e-03

Joint ci ratio: 8.887210e-02	ci left: 3.703693e-03	ci right 4.050095e-03	k: 1937	n:500000
Cons ci ratio: 2.239182e-03	ci left: 8.587724e-01	ci right 8.606994e-01	k: 429869	n:500000
KS ci ratio: 1.793987e-01	ci left: 8.684225e-04	ci right 1.041444e-03	k: 476	n:500000
SLC24A3   500000 perm   183 sec   (2735 perm/sec)   p_kst 9.520000e-04   p_cons 8.597380e-01   p_joint 3.874000e-03

Joint ci ratio: 8.770213e-02	ci left: 3.730784e-03	ci right 4.074890e-03	k: 1989	n:510000
Cons ci ratio: 2.217235e-03	ci left: 8.587694e-01	ci right 8.606775e-01	k: 438460	n:510000
KS ci ratio: 1.780971e-01	ci left: 8.645058e-04	ci right 1.035363e-03	k: 483	n:510000
SLC24A3   510000 perm   188 sec   (2709 perm/sec)   p_kst 9.470588e-04   p_cons 8.597255e-01   p_joint 3.900000e-03

Joint ci ratio: 9.486237e-02	ci left: 3.117768e-03	ci right 3.430115e-03	k: 1701	n:520000
Cons ci ratio: 2.196376e-03	ci left: 8.587164e-01	ci right 8.606065e-01	k: 447025	n:520000
KS ci ratio: 1.766435e-01	ci left: 8.625822e-04	ci right 1.031519e-03	k: 491	n:520000
SLC24A3   520000 perm   194 sec   (2684 perm/sec)   p_kst 9.442308e-04   p_cons 8.596635e-01   p_joint 3.271154e-03

Joint ci ratio: 9.384739e-02	ci left: 3.127107e-03	ci right 3.436853e-03	k: 1738	n:530000
Cons ci ratio: 2.175721e-03	ci left: 8.587072e-01	ci right 8.605794e-01	k: 455612	n:530000
KS ci ratio: 1.736673e-01	ci left: 8.769770e-04	ci right 1.045536e-03	k: 508	n:530000
SLC24A3   530000 perm   199 sec   (2660 perm/sec)   p_kst 9.584906e-04   p_cons 8.596453e-01   p_joint 3.279245e-03

Joint ci ratio: 9.312773e-02	ci left: 3.118027e-03	ci right 3.424377e-03	k: 1765	n:540000
Cons ci ratio: 2.154711e-03	ci left: 8.588024e-01	ci right 8.606567e-01	k: 464255	n:540000
KS ci ratio: 1.719860e-01	ci left: 8.784542e-04	ci right 1.045493e-03	k: 518	n:540000
SLC24A3   540000 perm   205 sec   (2635 perm/sec)   p_kst 9.592593e-04   p_cons 8.597315e-01   p_joint 3.268519e-03

Joint ci ratio: 9.252797e-02	ci left: 3.102182e-03	ci right 3.404906e-03	k: 1788	n:550000
Cons ci ratio: 2.135054e-03	ci left: 8.588085e-01	ci right 8.606459e-01	k: 472851	n:550000
KS ci ratio: 1.708382e-01	ci left: 8.746635e-04	ci right 1.039757e-03	k: 525	n:550000
SLC24A3   550000 perm   211 sec   (2611 perm/sec)   p_kst 9.545455e-04   p_cons 8.597291e-01   p_joint 3.250909e-03

Joint ci ratio: 8.100564e-02	ci left: 3.995550e-03	ci right 4.334611e-03	k: 2331	n:560000
Cons ci ratio: 2.115518e-03	ci left: 8.588610e-01	ci right 8.606817e-01	k: 481473	n:560000
KS ci ratio: 1.728243e-01	ci left: 8.385361e-04	ci right 9.988424e-04	k: 513	n:560000
SLC24A3   560000 perm   216 sec   (2588 perm/sec)   p_kst 9.160714e-04   p_cons 8.597732e-01   p_joint 4.162500e-03

Joint ci ratio: 8.031984e-02	ci left: 3.994213e-03	ci right 4.330156e-03	k: 2371	n:570000
Cons ci ratio: 2.097470e-03	ci left: 8.588010e-01	ci right 8.606059e-01	k: 490032	n:570000
KS ci ratio: 1.716597e-01	ci left: 8.355761e-04	ci right 9.941286e-04	k: 520	n:570000
SLC24A3   570000 perm   222 sec   (2564 perm/sec)   p_kst 9.122807e-04   p_cons 8.597053e-01   p_joint 4.159649e-03

Joint ci ratio: 8.122157e-02	ci left: 3.837490e-03	ci right 4.164047e-03	k: 2319	n:580000
Cons ci ratio: 2.079251e-03	ci left: 8.588157e-01	ci right 8.606049e-01	k: 498633	n:580000
KS ci ratio: 1.708425e-01	ci left: 8.294206e-04	ci right 9.859786e-04	k: 525	n:580000
SLC24A3   580000 perm   228 sec   (2541 perm/sec)   p_kst 9.051724e-04   p_cons 8.597121e-01   p_joint 3.998276e-03

Joint ci ratio: 8.044480e-02	ci left: 3.847178e-03	ci right 4.171281e-03	k: 2364	n:590000
Cons ci ratio: 2.061020e-03	ci left: 8.588860e-01	ci right 8.606596e-01	k: 507267	n:590000
KS ci ratio: 1.692411e-01	ci left: 8.315905e-04	ci right 9.869368e-04	k: 535	n:590000
SLC24A3   590000 perm   235 sec   (2516 perm/sec)   p_kst 9.067797e-04   p_cons 8.597746e-01   p_joint 4.006780e-03

Joint ci ratio: 8.103438e-02	ci left: 3.727527e-03	ci right 4.043960e-03	k: 2330	n:600000
Cons ci ratio: 2.043783e-03	ci left: 8.588922e-01	ci right 8.606510e-01	k: 515864	n:600000
KS ci ratio: 1.681470e-01	ci left: 8.289047e-04	ci right 9.826467e-04	k: 542	n:600000
SLC24A3   600000 perm   241 sec   (2494 perm/sec)   p_kst 9.033333e-04   p_cons 8.597733e-01   p_joint 3.883333e-03

Joint ci ratio: 8.065578e-02	ci left: 3.701754e-03	ci right 4.014462e-03	k: 2352	n:610000
Cons ci ratio: 2.027344e-03	ci left: 8.588539e-01	ci right 8.605984e-01	k: 524434	n:610000
KS ci ratio: 1.675318e-01	ci left: 8.215977e-04	ci right 9.733707e-04	k: 546	n:610000
SLC24A3   610000 perm   247 sec   (2474 perm/sec)   p_kst 8.950820e-04   p_cons 8.597279e-01   p_joint 3.855738e-03

Joint ci ratio: 8.091761e-02	ci left: 3.618337e-03	ci right 3.925038e-03	k: 2337	n:620000
Cons ci ratio: 2.010864e-03	ci left: 8.588686e-01	ci right 8.605990e-01	k: 533036	n:620000
KS ci ratio: 1.661703e-01	ci left: 8.222562e-04	ci right 9.727929e-04	k: 555	n:620000
SLC24A3   620000 perm   253 sec   (2453 perm/sec)   p_kst 8.951613e-04   p_cons 8.597355e-01   p_joint 3.769355e-03

Joint ci ratio: 8.267768e-02	ci left: 3.408514e-03	ci right 3.704016e-03	k: 2239	n:630000
Cons ci ratio: 1.994163e-03	ci left: 8.589577e-01	ci right 8.606739e-01	k: 541685	n:630000
KS ci ratio: 1.652813e-01	ci left: 8.183331e-04	ci right 9.672704e-04	k: 561	n:630000
SLC24A3   630000 perm   259 sec   (2432 perm/sec)   p_kst 8.904762e-04   p_cons 8.598175e-01   p_joint 3.553968e-03

Joint ci ratio: 8.255064e-02	ci left: 3.365965e-03	ci right 3.657308e-03	k: 2246	n:640000
Cons ci ratio: 1.978512e-03	ci left: 8.589658e-01	ci right 8.606685e-01	k: 550284	n:640000
KS ci ratio: 1.638300e-01	ci left: 8.205283e-04	ci right 9.684246e-04	k: 571	n:640000
SLC24A3   640000 perm   265 sec   (2412 perm/sec)   p_kst 8.921875e-04   p_cons 8.598187e-01   p_joint 3.509375e-03

Joint ci ratio: 8.186117e-02	ci left: 3.371441e-03	ci right 3.660704e-03	k: 2284	n:650000
Cons ci ratio: 1.963048e-03	ci left: 8.589952e-01	ci right 8.606846e-01	k: 558897	n:650000
KS ci ratio: 1.621377e-01	ci left: 8.256135e-04	ci right 9.727394e-04	k: 583	n:650000
SLC24A3   650000 perm   272 sec   (2392 perm/sec)   p_kst 8.969231e-04   p_cons 8.598415e-01   p_joint 3.513846e-03

Joint ci ratio: 8.163067e-02	ci left: 3.339650e-03	ci right 3.625341e-03	k: 2297	n:660000
Cons ci ratio: 1.948418e-03	ci left: 8.589646e-01	ci right 8.606413e-01	k: 567471	n:660000
KS ci ratio: 1.609027e-01	ci left: 8.261894e-04	ci right 9.721880e-04	k: 592	n:660000
SLC24A3   660000 perm   278 sec   (2374 perm/sec)   p_kst 8.969697e-04   p_cons 8.598045e-01   p_joint 3.480303e-03

Joint ci ratio: 8.241009e-02	ci left: 3.226934e-03	ci right 3.505745e-03	k: 2254	n:670000
Cons ci ratio: 1.933428e-03	ci left: 8.590202e-01	ci right 8.606841e-01	k: 576102	n:670000
KS ci ratio: 1.592986e-01	ci left: 8.310513e-04	ci right 9.763049e-04	k: 604	n:670000
SLC24A3   670000 perm   284 sec   (2355 perm/sec)   p_kst 9.014925e-04   p_cons 8.598537e-01   p_joint 3.364179e-03

Joint ci ratio: 8.233890e-02	ci left: 3.185238e-03	ci right 3.460197e-03	k: 2258	n:680000
Cons ci ratio: 1.918404e-03	ci left: 8.591214e-01	ci right 8.607726e-01	k: 584765	n:680000
KS ci ratio: 1.574863e-01	ci left: 8.386024e-04	ci right 9.833508e-04	k: 618	n:680000
SLC24A3   680000 perm   291 sec   (2336 perm/sec)   p_kst 9.088235e-04   p_cons 8.599485e-01   p_joint 3.320588e-03

Joint ci ratio: 8.219500e-02	ci left: 3.150428e-03	ci right 3.421884e-03	k: 2266	n:690000
Cons ci ratio: 1.904779e-03	ci left: 8.590861e-01	ci right 8.607254e-01	k: 593336	n:690000
KS ci ratio: 1.558577e-01	ci left: 8.445509e-04	ci right 9.886777e-04	k: 631	n:690000
SLC24A3   690000 perm   298 sec   (2318 perm/sec)   p_kst 9.144928e-04   p_cons 8.599072e-01   p_joint 3.284058e-03

Joint ci ratio: 8.156763e-02	ci left: 3.154399e-03	ci right 3.424024e-03	k: 2301	n:700000
Cons ci ratio: 1.890867e-03	ci left: 8.591248e-01	ci right 8.607522e-01	k: 601958	n:700000
KS ci ratio: 1.547597e-01	ci left: 8.448434e-04	ci right 9.879102e-04	k: 640	n:700000
SLC24A3   700000 perm   304 sec   (2300 perm/sec)   p_kst 9.142857e-04   p_cons 8.599400e-01   p_joint 3.287143e-03

Joint ci ratio: 8.093703e-02	ci left: 3.159645e-03	ci right 3.427532e-03	k: 2337	n:710000
Cons ci ratio: 1.877475e-03	ci left: 8.591342e-01	ci right 8.607501e-01	k: 610560	n:710000
KS ci ratio: 1.534484e-01	ci left: 8.478398e-04	ci right 9.900857e-04	k: 651	n:710000
SLC24A3   710000 perm   311 sec   (2282 perm/sec)   p_kst 9.169014e-04   p_cons 8.599437e-01   p_joint 3.291549e-03

Joint ci ratio: 8.045697e-02	ci left: 3.153865e-03	ci right 3.419601e-03	k: 2365	n:720000
Cons ci ratio: 1.864235e-03	ci left: 8.591602e-01	ci right 8.607647e-01	k: 619174	n:720000
KS ci ratio: 1.527476e-01	ci left: 8.440782e-04	ci right 9.849870e-04	k: 657	n:720000
SLC24A3   720000 perm   318 sec   (2264 perm/sec)   p_kst 9.125000e-04   p_cons 8.599639e-01   p_joint 3.284722e-03

Joint ci ratio: 8.062991e-02	ci left: 3.097235e-03	ci right 3.358787e-03	k: 2355	n:730000
Cons ci ratio: 1.851892e-03	ci left: 8.591044e-01	ci right 8.606982e-01	k: 627729	n:730000
KS ci ratio: 1.519417e-01	ci left: 8.417389e-04	ci right 9.814485e-04	k: 664	n:730000
SLC24A3   730000 perm   325 sec   (2246 perm/sec)   p_kst 9.095890e-04   p_cons 8.599027e-01   p_joint 3.226027e-03

Joint ci ratio: 8.130959e-02	ci left: 3.003739e-03	ci right 3.259635e-03	k: 2316	n:740000
Cons ci ratio: 1.840080e-03	ci left: 8.590123e-01	ci right 8.605957e-01	k: 636256	n:740000
KS ci ratio: 1.510361e-01	ci left: 8.407651e-04	ci right 9.794060e-04	k: 672	n:740000
SLC24A3   740000 perm   332 sec   (2228 perm/sec)   p_kst 9.081081e-04   p_cons 8.598054e-01   p_joint 3.129730e-03

Joint ci ratio: 8.264579e-02	ci left: 2.867036e-03	ci right 3.115494e-03	k: 2242	n:750000
Cons ci ratio: 1.827185e-03	ci left: 8.590950e-01	ci right 8.606675e-01	k: 644912	n:750000
KS ci ratio: 1.500362e-01	ci left: 8.411029e-04	ci right 9.787989e-04	k: 681	n:750000
SLC24A3   750000 perm   339 sec   (2211 perm/sec)   p_kst 9.080000e-04   p_cons 8.598827e-01   p_joint 2.989333e-03

Joint ci ratio: 8.366360e-02	ci left: 2.759731e-03	ci right 3.001978e-03	k: 2188	n:760000
Cons ci ratio: 1.815430e-03	ci left: 8.590596e-01	ci right 8.606219e-01	k: 653480	n:760000
KS ci ratio: 1.490559e-01	ci left: 8.414347e-04	ci right 9.782049e-04	k: 690	n:760000
SLC24A3   760000 perm   346 sec   (2194 perm/sec)   p_kst 9.078947e-04   p_cons 8.598421e-01   p_joint 2.878947e-03

Joint ci ratio: 8.319011e-02	ci left: 2.755680e-03	ci right 2.996136e-03	k: 2213	n:770000
Cons ci ratio: 1.803500e-03	ci left: 8.590785e-01	ci right 8.606305e-01	k: 662089	n:770000
KS ci ratio: 1.482006e-01	ci left: 8.405102e-04	ci right 9.762767e-04	k: 698	n:770000
SLC24A3   770000 perm   354 sec   (2177 perm/sec)   p_kst 9.064935e-04   p_cons 8.598558e-01   p_joint 2.874026e-03

Joint ci ratio: 8.281736e-02	ci left: 2.745459e-03	ci right 2.983898e-03	k: 2233	n:780000
Cons ci ratio: 1.792336e-03	ci left: 8.590250e-01	ci right 8.605672e-01	k: 670642	n:780000
KS ci ratio: 1.472557e-01	ci left: 8.408464e-04	ci right 9.757249e-04	k: 707	n:780000
SLC24A3   780000 perm   361 sec   (2161 perm/sec)   p_kst 9.064103e-04   p_cons 8.597974e-01   p_joint 2.862821e-03

Joint ci ratio: 8.224854e-02	ci left: 2.749137e-03	ci right 2.986177e-03	k: 2264	n:790000
Cons ci ratio: 1.781293e-03	ci left: 8.589842e-01	ci right 8.605169e-01	k: 679204	n:790000
KS ci ratio: 1.462265e-01	ci left: 8.423963e-04	ci right 9.764966e-04	k: 717	n:790000
SLC24A3   790000 perm   368 sec   (2145 perm/sec)   p_kst 9.075949e-04   p_cons 8.597519e-01   p_joint 2.865823e-03

Joint ci ratio: 8.310057e-02	ci left: 2.658456e-03	ci right 2.890167e-03	k: 2218	n:800000
Cons ci ratio: 1.770129e-03	ci left: 8.589884e-01	ci right 8.605115e-01	k: 687801	n:800000
KS ci ratio: 1.457204e-01	ci left: 8.378880e-04	ci right 9.707687e-04	k: 722	n:800000
SLC24A3   800000 perm   376 sec   (2129 perm/sec)   p_kst 9.025000e-04   p_cons 8.597512e-01   p_joint 2.772500e-03

Joint ci ratio: 8.376705e-02	ci left: 2.583324e-03	ci right 2.810380e-03	k: 2183	n:810000
Cons ci ratio: 1.759245e-03	ci left: 8.589826e-01	ci right 8.604963e-01	k: 696390	n:810000
KS ci ratio: 1.444274e-01	ci left: 8.430106e-04	ci right 9.754152e-04	k: 735	n:810000
SLC24A3   810000 perm   384 sec   (2112 perm/sec)   p_kst 9.074074e-04   p_cons 8.597407e-01   p_joint 2.695062e-03

Joint ci ratio: 8.346244e-02	ci left: 2.570923e-03	ci right 2.796028e-03	k: 2199	n:820000
Cons ci ratio: 1.748984e-03	ci left: 8.589183e-01	ci right 8.604231e-01	k: 704931	n:820000
KS ci ratio: 1.435523e-01	ci left: 8.433102e-04	ci right 9.748907e-04	k: 744	n:820000
SLC24A3   820000 perm   391 sec   (2096 perm/sec)   p_kst 9.073171e-04   p_cons 8.596720e-01   p_joint 2.681707e-03

Joint ci ratio: 8.321763e-02	ci left: 2.555283e-03	ci right 2.778330e-03	k: 2212	n:830000
Cons ci ratio: 1.738821e-03	ci left: 8.588665e-01	ci right 8.603624e-01	k: 713481	n:830000
KS ci ratio: 1.428828e-01	ci left: 8.412813e-04	ci right 9.718808e-04	k: 751	n:830000
SLC24A3   830000 perm   399 sec   (2081 perm/sec)   p_kst 9.048193e-04   p_cons 8.596157e-01   p_joint 2.665060e-03

Joint ci ratio: 8.278871e-02	ci left: 2.551676e-03	ci right 2.773204e-03	k: 2235	n:840000
Cons ci ratio: 1.728757e-03	ci left: 8.588266e-01	ci right 8.603138e-01	k: 722040	n:840000
KS ci ratio: 1.420354e-01	ci left: 8.415985e-04	ci right 9.714067e-04	k: 760	n:840000
SLC24A3   840000 perm   406 sec   (2067 perm/sec)   p_kst 9.047619e-04   p_cons 8.595714e-01   p_joint 2.660714e-03

Joint ci ratio: 8.232982e-02	ci left: 2.550461e-03	ci right 2.770597e-03	k: 2260	n:850000
Cons ci ratio: 1.718631e-03	ci left: 8.588207e-01	ci right 8.602992e-01	k: 730627	n:850000
KS ci ratio: 1.412029e-01	ci left: 8.419104e-04	ci right 9.709415e-04	k: 769	n:850000
SLC24A3   850000 perm   414 sec   (2052 perm/sec)   p_kst 9.047059e-04   p_cons 8.595612e-01   p_joint 2.658824e-03

Joint ci ratio: 8.284702e-02	ci left: 2.488915e-03	ci right 2.705154e-03	k: 2232	n:860000
Cons ci ratio: 1.708639e-03	ci left: 8.588209e-01	ci right 8.602907e-01	k: 739219	n:860000
KS ci ratio: 1.403849e-01	ci left: 8.422173e-04	ci right 9.704850e-04	k: 778	n:860000
SLC24A3   860000 perm   422 sec   (2038 perm/sec)   p_kst 9.046512e-04   p_cons 8.595570e-01   p_joint 2.595349e-03

Joint ci ratio: 8.246042e-02	ci left: 2.483946e-03	ci right 2.698698e-03	k: 2253	n:870000
Cons ci ratio: 1.699030e-03	ci left: 8.587911e-01	ci right 8.602525e-01	k: 747785	n:870000
KS ci ratio: 1.398476e-01	ci left: 8.391913e-04	ci right 9.664683e-04	k: 784	n:870000
SLC24A3   870000 perm   430 sec   (2023 perm/sec)   p_kst 9.011494e-04   p_cons 8.595230e-01   p_joint 2.589655e-03

Joint ci ratio: 7.467541e-02	ci left: 3.004995e-03	ci right 3.239204e-03	k: 2746	n:880000
Cons ci ratio: 1.689247e-03	ci left: 8.588098e-01	ci right 8.602629e-01	k: 756393	n:880000
KS ci ratio: 1.392284e-01	ci left: 8.373318e-04	ci right 9.637179e-04	k: 791	n:880000
SLC24A3   880000 perm   438 sec   (2009 perm/sec)   p_kst 8.988636e-04   p_cons 8.595375e-01   p_joint 3.120455e-03

Joint ci ratio: 6.566972e-02	ci left: 3.856659e-03	ci right 4.119620e-03	k: 3548	n:890000
Cons ci ratio: 1.679827e-03	ci left: 8.588000e-01	ci right 8.602449e-01	k: 764976	n:890000
KS ci ratio: 1.386173e-01	ci left: 8.355153e-04	ci right 9.610280e-04	k: 798	n:890000
SLC24A3   890000 perm   446 sec   (1995 perm/sec)   p_kst 8.966292e-04   p_cons 8.595236e-01   p_joint 3.986517e-03

Joint ci ratio: 6.568977e-02	ci left: 3.811618e-03	ci right 4.071590e-03	k: 3546	n:900000
Cons ci ratio: 1.670540e-03	ci left: 8.587937e-01	ci right 8.602306e-01	k: 773562	n:900000
KS ci ratio: 1.378431e-01	ci left: 8.358860e-04	ci right 9.606955e-04	k: 807	n:900000
SLC24A3   900000 perm   454 sec   (1982 perm/sec)   p_kst 8.966667e-04   p_cons 8.595133e-01   p_joint 3.940000e-03

Joint ci ratio: 6.534990e-02	ci left: 3.809725e-03	ci right 4.068173e-03	k: 3583	n:910000
Cons ci ratio: 1.660951e-03	ci left: 8.588537e-01	ci right 8.602825e-01	k: 782208	n:910000
KS ci ratio: 1.371658e-01	ci left: 8.351892e-04	ci right 9.592319e-04	k: 815	n:910000
SLC24A3   910000 perm   462 sec   (1969 perm/sec)   p_kst 8.956044e-04   p_cons 8.595692e-01   p_joint 3.937363e-03

Joint ci ratio: 6.662292e-02	ci left: 3.623986e-03	ci right 3.874807e-03	k: 3448	n:920000
Cons ci ratio: 1.652113e-03	ci left: 8.588264e-01	ci right 8.602475e-01	k: 790775	n:920000
KS ci ratio: 1.364156e-01	ci left: 8.355589e-04	ci right 9.589226e-04	k: 824	n:920000
SLC24A3   920000 perm   470 sec   (1955 perm/sec)   p_kst 8.956522e-04   p_cons 8.595380e-01   p_joint 3.747826e-03

Joint ci ratio: 6.623982e-02	ci left: 3.627315e-03	ci right 3.876867e-03	k: 3488	n:930000
Cons ci ratio: 1.643275e-03	ci left: 8.588201e-01	ci right 8.602336e-01	k: 799361	n:930000
KS ci ratio: 1.358407e-01	ci left: 8.338449e-04	ci right 9.563948e-04	k: 831	n:930000
SLC24A3   930000 perm   479 sec   (1942 perm/sec)   p_kst 8.935484e-04   p_cons 8.595280e-01   p_joint 3.750538e-03

Joint ci ratio: 6.604196e-02	ci left: 3.610696e-03	ci right 3.858335e-03	k: 3509	n:940000
Cons ci ratio: 1.633965e-03	ci left: 8.589046e-01	ci right 8.603102e-01	k: 808032	n:940000
KS ci ratio: 1.352729e-01	ci left: 8.321684e-04	ci right 9.539196e-04	k: 838	n:940000
SLC24A3   940000 perm   487 sec   (1929 perm/sec)   p_kst 8.914894e-04   p_cons 8.596085e-01   p_joint 3.732979e-03

Joint ci ratio: 6.576178e-02	ci left: 3.603747e-03	ci right 3.849821e-03	k: 3539	n:950000
Cons ci ratio: 1.625358e-03	ci left: 8.589061e-01	ci right 8.603043e-01	k: 816626	n:950000
KS ci ratio: 1.348719e-01	ci left: 8.284940e-04	ci right 9.493194e-04	k: 843	n:950000
SLC24A3   950000 perm   496 sec   (1916 perm/sec)   p_kst 8.873684e-04   p_cons 8.596063e-01   p_joint 3.725263e-03

Joint ci ratio: 6.532005e-02	ci left: 3.615389e-03	ci right 3.860537e-03	k: 3587	n:960000
Cons ci ratio: 1.616759e-03	ci left: 8.589264e-01	ci right 8.603172e-01	k: 825238	n:960000
KS ci ratio: 1.343162e-01	ci left: 8.269099e-04	ci right 9.469678e-04	k: 850	n:960000
SLC24A3   960000 perm   504 sec   (1904 perm/sec)   p_kst 8.854167e-04   p_cons 8.596229e-01   p_joint 3.736458e-03

Joint ci ratio: 6.534874e-02	ci left: 3.575072e-03	ci right 3.817597e-03	k: 3584	n:970000
Cons ci ratio: 1.608529e-03	ci left: 8.589112e-01	ci right 8.602949e-01	k: 833816	n:970000
KS ci ratio: 1.337673e-01	ci left: 8.253595e-04	ci right 9.446636e-04	k: 857	n:970000
SLC24A3   970000 perm   513 sec   (1891 perm/sec)   p_kst 8.835052e-04   p_cons 8.596041e-01   p_joint 3.694845e-03

Joint ci ratio: 8.113055e-02	ci left: 2.280091e-03	ci right 2.473889e-03	k: 2328	n:980000
Cons ci ratio: 1.530733e-03	ci left: 8.693254e-01	ci right 8.706581e-01	k: 852593	n:980000
KS ci ratio: 1.329179e-01	ci left: 8.277876e-04	ci right 9.466228e-04	k: 868	n:980000
SLC24A3   980000 perm   522 sec   (1877 perm/sec)   p_kst 8.857143e-04   p_cons 8.699929e-01   p_joint 2.375510e-03

Joint ci ratio: 8.078458e-02	ci left: 2.276853e-03	ci right 2.469511e-03	k: 2348	n:990000
Cons ci ratio: 1.523078e-03	ci left: 8.693147e-01	ci right 8.706407e-01	k: 861279	n:990000
KS ci ratio: 1.324615e-01	ci left: 8.252855e-04	ci right 9.433227e-04	k: 874	n:990000
SLC24A3   990000 perm   531 sec   (1865 perm/sec)   p_kst 8.828283e-04   p_cons 8.699788e-01   p_joint 2.371717e-03

Joint ci ratio: 8.037502e-02	ci left: 2.277601e-03	ci right 2.469300e-03	k: 2372	n:1000000
Cons ci ratio: 1.515622e-03	ci left: 8.692912e-01	ci right 8.706107e-01	k: 869952	n:1000000
KS ci ratio: 1.314141e-01	ci left: 8.305707e-04	ci right 9.483512e-04	k: 888	n:1000000
SLC24A3   1000000 perm   540 sec   (1853 perm/sec)   p_kst 8.880000e-04   p_cons 8.699520e-01   p_joint 2.372000e-03

Joint ci ratio: 8.002183e-02	ci left: 2.275425e-03	ci right 2.466060e-03	k: 2393	n:1010000
Cons ci ratio: 1.507933e-03	ci left: 8.693198e-01	ci right 8.706326e-01	k: 878677	n:1010000
KS ci ratio: 1.309730e-01	ci left: 8.280928e-04	ci right 9.450971e-04	k: 894	n:1010000
SLC24A3   1010000 perm   549 sec   (1840 perm/sec)   p_kst 8.851485e-04   p_cons 8.699772e-01   p_joint 2.369307e-03

Joint ci ratio: 7.975605e-02	ci left: 2.268490e-03	ci right 2.457883e-03	k: 2409	n:1020000
Cons ci ratio: 1.500866e-03	ci left: 8.692711e-01	ci right 8.705777e-01	k: 887324	n:1020000
KS ci ratio: 1.303916e-01	ci left: 8.275609e-04	ci right 9.439309e-04	k: 902	n:1020000
SLC24A3   1020000 perm   558 sec   (1828 perm/sec)   p_kst 8.843137e-04   p_cons 8.699255e-01   p_joint 2.361765e-03

Joint ci ratio: 7.934552e-02	ci left: 2.270255e-03	ci right 2.458775e-03	k: 2434	n:1030000
Cons ci ratio: 1.493628e-03	ci left: 8.692644e-01	ci right 8.705646e-01	k: 896013	n:1030000
KS ci ratio: 1.300324e-01	ci left: 8.242225e-04	ci right 9.397790e-04	k: 907	n:1030000
SLC24A3   1030000 perm   567 sec   (1817 perm/sec)   p_kst 8.805825e-04   p_cons 8.699155e-01   p_joint 2.363107e-03

Joint ci ratio: 8.465092e-02	ci left: 1.970569e-03	ci right 2.145685e-03	k: 2139	n:1040000
Cons ci ratio: 1.486083e-03	ci left: 8.693203e-01	ci right 8.706141e-01	k: 904767	n:1040000
KS ci ratio: 1.311949e-01	ci left: 8.014147e-04	ci right 9.148564e-04	k: 891	n:1040000
SLC24A3   1040000 perm   576 sec   (1805 perm/sec)   p_kst 8.567308e-04   p_cons 8.699683e-01   p_joint 2.056731e-03

Joint ci ratio: 8.431683e-02	ci left: 1.967649e-03	ci right 2.141782e-03	k: 2156	n:1050000
Cons ci ratio: 1.479218e-03	ci left: 8.692884e-01	ci right 8.705762e-01	k: 913430	n:1050000
KS ci ratio: 1.304656e-01	ci left: 8.029944e-04	ci right 9.159788e-04	k: 901	n:1050000
SLC24A3   1050000 perm   585 sec   (1794 perm/sec)   p_kst 8.580952e-04   p_cons 8.699333e-01   p_joint 2.053333e-03

Joint ci ratio: 8.387076e-02	ci left: 1.970329e-03	ci right 2.143731e-03	k: 2179	n:1060000
Cons ci ratio: 1.472324e-03	ci left: 8.692761e-01	ci right 8.705578e-01	k: 922113	n:1060000
KS ci ratio: 1.299624e-01	ci left: 8.018076e-04	ci right 9.141563e-04	k: 908	n:1060000
SLC24A3   1060000 perm   595 sec   (1783 perm/sec)   p_kst 8.566038e-04   p_cons 8.699179e-01   p_joint 2.055660e-03

Joint ci ratio: 8.345068e-02	ci left: 1.972045e-03	ci right 2.144687e-03	k: 2201	n:1070000
Cons ci ratio: 1.465665e-03	ci left: 8.692424e-01	ci right 8.705182e-01	k: 930773	n:1070000
KS ci ratio: 1.290426e-01	ci left: 8.060701e-04	ci right 9.181555e-04	k: 921	n:1070000
SLC24A3   1070000 perm   604 sec   (1772 perm/sec)   p_kst 8.607477e-04   p_cons 8.698813e-01   p_joint 2.057009e-03

Joint ci ratio: 8.324339e-02	ci left: 1.963758e-03	ci right 2.135226e-03	k: 2212	n:1080000
Cons ci ratio: 1.459036e-03	ci left: 8.692186e-01	ci right 8.704887e-01	k: 939443	n:1080000
KS ci ratio: 1.286944e-01	ci left: 8.030868e-04	ci right 9.144330e-04	k: 926	n:1080000
SLC24A3   1080000 perm   613 sec   (1762 perm/sec)   p_kst 8.574074e-04   p_cons 8.698546e-01   p_joint 2.048148e-03

Joint ci ratio: 8.279551e-02	ci left: 1.967303e-03	ci right 2.138112e-03	k: 2236	n:1090000
Cons ci ratio: 1.452295e-03	ci left: 8.692266e-01	ci right 8.704907e-01	k: 948147	n:1090000
KS ci ratio: 1.280741e-01	ci left: 8.037107e-04	ci right 9.145656e-04	k: 935	n:1090000
SLC24A3   1090000 perm   622 sec   (1751 perm/sec)   p_kst 8.577982e-04   p_cons 8.698596e-01   p_joint 2.051376e-03

Joint ci ratio: 8.255626e-02	ci left: 1.960992e-03	ci right 2.130738e-03	k: 2249	n:1100000
Cons ci ratio: 1.445566e-03	ci left: 8.692471e-01	ci right 8.705055e-01	k: 956865	n:1100000
KS ci ratio: 1.271266e-01	ci left: 8.087254e-04	ci right 9.193845e-04	k: 949	n:1100000
SLC24A3   1100000 perm   632 sec   (1741 perm/sec)   p_kst 8.627273e-04   p_cons 8.698773e-01   p_joint 2.044545e-03

Joint ci ratio: 8.226445e-02	ci left: 1.957443e-03	ci right 2.126254e-03	k: 2265	n:1110000
Cons ci ratio: 1.439188e-03	ci left: 8.692267e-01	ci right 8.704795e-01	k: 965538	n:1110000
KS ci ratio: 1.266609e-01	ci left: 8.075457e-04	ci right 9.176082e-04	k: 956	n:1110000
SLC24A3   1110000 perm   641 sec   (1731 perm/sec)   p_kst 8.612613e-04   p_cons 8.698541e-01   p_joint 2.040541e-03

Joint ci ratio: 8.190381e-02	ci left: 1.957456e-03	ci right 2.125493e-03	k: 2285	n:1120000
Cons ci ratio: 1.432627e-03	ci left: 8.692487e-01	ci right 8.704958e-01	k: 974258	n:1120000
KS ci ratio: 1.261348e-01	ci left: 8.072525e-04	ci right 9.167839e-04	k: 964	n:1120000
SLC24A3   1120000 perm   651 sec   (1720 perm/sec)   p_kst 8.607143e-04   p_cons 8.698732e-01   p_joint 2.040179e-03

Joint ci ratio: 8.197645e-02	ci left: 1.936665e-03	ci right 2.103072e-03	k: 2281	n:1130000
Cons ci ratio: 1.426668e-03	ci left: 8.691888e-01	ci right 8.704306e-01	k: 982886	n:1130000
KS ci ratio: 1.256153e-01	ci left: 8.069653e-04	ci right 9.159732e-04	k: 972	n:1130000
SLC24A3   1130000 perm   661 sec   (1711 perm/sec)   p_kst 8.601770e-04   p_cons 8.698106e-01   p_joint 2.018584e-03

Joint ci ratio: 8.156633e-02	ci left: 1.939440e-03	ci right 2.105211e-03	k: 2304	n:1140000
Cons ci ratio: 1.420563e-03	ci left: 8.691651e-01	ci right 8.704015e-01	k: 991554	n:1140000
KS ci ratio: 1.249746e-01	ci left: 8.083837e-04	ci right 9.169850e-04	k: 982	n:1140000
SLC24A3   1140000 perm   670 sec   (1701 perm/sec)   p_kst 8.614035e-04   p_cons 8.697842e-01   p_joint 2.021053e-03

Joint ci ratio: 8.123226e-02	ci left: 1.938761e-03	ci right 2.103763e-03	k: 2323	n:1150000
Cons ci ratio: 1.414394e-03	ci left: 8.691644e-01	ci right 8.703955e-01	k: 1000248	n:1150000
KS ci ratio: 1.242185e-01	ci left: 8.114639e-04	ci right 9.197710e-04	k: 994	n:1150000
SLC24A3   1150000 perm   680 sec   (1691 perm/sec)   p_kst 8.643478e-04   p_cons 8.697809e-01   p_joint 2.020000e-03

Joint ci ratio: 7.720908e-02	ci left: 2.131616e-03	ci right 2.303643e-03	k: 2571	n:1160000
Cons ci ratio: 1.408299e-03	ci left: 8.691647e-01	ci right 8.703904e-01	k: 1008943	n:1160000
KS ci ratio: 1.235989e-01	ci left: 8.128221e-04	ci right 9.207297e-04	k: 1004	n:1160000
SLC24A3   1160000 perm   690 sec   (1682 perm/sec)   p_kst 8.655172e-04   p_cons 8.697784e-01   p_joint 2.216379e-03

Joint ci ratio: 7.749722e-02	ci left: 2.097470e-03	ci right 2.267402e-03	k: 2552	n:1170000
Cons ci ratio: 1.402092e-03	ci left: 8.691957e-01	ci right 8.704161e-01	k: 1017674	n:1170000
KS ci ratio: 1.233539e-01	ci left: 8.091880e-04	ci right 9.163846e-04	k: 1008	n:1170000
SLC24A3   1170000 perm   700 sec   (1672 perm/sec)   p_kst 8.615385e-04   p_cons 8.698068e-01   p_joint 2.181197e-03

Joint ci ratio: 7.710545e-02	ci left: 2.101303e-03	ci right 2.270647e-03	k: 2578	n:1180000
Cons ci ratio: 1.395971e-03	ci left: 8.692254e-01	ci right 8.704405e-01	k: 1026404	n:1180000
KS ci ratio: 1.227471e-01	ci left: 8.105442e-04	ci right 9.173539e-04	k: 1018	n:1180000
SLC24A3   1180000 perm   710 sec   (1663 perm/sec)   p_kst 8.627119e-04   p_cons 8.698339e-01   p_joint 2.184746e-03

Joint ci ratio: 7.733187e-02	ci left: 2.071282e-03	ci right 2.238719e-03	k: 2563	n:1190000
Cons ci ratio: 1.390198e-03	ci left: 8.692109e-01	ci right 8.704209e-01	k: 1035082	n:1190000
KS ci ratio: 1.223874e-01	ci left: 8.086203e-04	ci right 9.148417e-04	k: 1024	n:1190000
SLC24A3   1190000 perm   720 sec   (1653 perm/sec)   p_kst 8.605042e-04   p_cons 8.698168e-01   p_joint 2.153782e-03

Joint ci ratio: 7.734768e-02	ci left: 2.053204e-03	ci right 2.219214e-03	k: 2562	n:1200000
Cons ci ratio: 1.384318e-03	ci left: 8.692258e-01	ci right 8.704307e-01	k: 1043795	n:1200000
KS ci ratio: 1.219126e-01	ci left: 8.083448e-04	ci right 9.140883e-04	k: 1032	n:1200000
SLC24A3   1200000 perm   730 sec   (1643 perm/sec)   p_kst 8.600000e-04   p_cons 8.698292e-01   p_joint 2.135000e-03

Joint ci ratio: 7.707760e-02	ci left: 2.050824e-03	ci right 2.216037e-03	k: 2580	n:1210000
Cons ci ratio: 1.378517e-03	ci left: 8.692397e-01	ci right 8.704396e-01	k: 1052507	n:1210000
KS ci ratio: 1.214433e-01	ci left: 8.080746e-04	ci right 9.133465e-04	k: 1040	n:1210000
SLC24A3   1210000 perm   741 sec   (1634 perm/sec)   p_kst 8.595041e-04   p_cons 8.698405e-01   p_joint 2.132231e-03

Joint ci ratio: 7.683997e-02	ci left: 2.046876e-03	ci right 2.211240e-03	k: 2596	n:1220000
Cons ci ratio: 1.372793e-03	ci left: 8.692525e-01	ci right 8.704474e-01	k: 1061218	n:1220000
KS ci ratio: 1.209794e-01	ci left: 8.078096e-04	ci right 9.126162e-04	k: 1048	n:1220000
SLC24A3   1220000 perm   751 sec   (1625 perm/sec)   p_kst 8.590164e-04   p_cons 8.698508e-01   p_joint 2.127869e-03

Joint ci ratio: 7.342068e-02	ci left: 2.227284e-03	ci right 2.397837e-03	k: 2843	n:1230000
Cons ci ratio: 1.367120e-03	ci left: 8.692684e-01	ci right 8.704584e-01	k: 1069933	n:1230000
KS ci ratio: 1.208070e-01	ci left: 8.036072e-04	ci right 9.077094e-04	k: 1051	n:1230000
SLC24A3   1230000 perm   761 sec   (1616 perm/sec)   p_kst 8.544715e-04   p_cons 8.698642e-01   p_joint 2.311382e-03

Joint ci ratio: 7.308728e-02	ci left: 2.229906e-03	ci right 2.399851e-03	k: 2869	n:1240000
Cons ci ratio: 1.361736e-03	ci left: 8.692476e-01	ci right 8.704329e-01	k: 1078603	n:1240000
KS ci ratio: 1.202368e-01	ci left: 8.049479e-04	ci right 9.086967e-04	k: 1061	n:1240000
SLC24A3   1240000 perm   772 sec   (1607 perm/sec)   p_kst 8.556452e-04   p_cons 8.698411e-01   p_joint 2.313710e-03

Joint ci ratio: 7.274578e-02	ci left: 2.233273e-03	ci right 2.402646e-03	k: 2896	n:1250000
Cons ci ratio: 1.356327e-03	ci left: 8.692417e-01	ci right 8.704222e-01	k: 1087291	n:1250000
KS ci ratio: 1.196747e-01	ci left: 8.062683e-04	ci right 9.096670e-04	k: 1071	n:1250000
SLC24A3   1250000 perm   782 sec   (1599 perm/sec)   p_kst 8.568000e-04   p_cons 8.698328e-01   p_joint 2.316800e-03

Joint ci ratio: 7.337101e-02	ci left: 2.177368e-03	ci right 2.343981e-03	k: 2847	n:1260000
Cons ci ratio: 1.350912e-03	ci left: 8.692477e-01	ci right 8.704236e-01	k: 1095994	n:1260000
KS ci ratio: 1.192306e-01	ci left: 8.060288e-04	ci right 9.089863e-04	k: 1079	n:1260000
SLC24A3   1260000 perm   792 sec   (1590 perm/sec)   p_kst 8.563492e-04   p_cons 8.698365e-01   p_joint 2.259524e-03

Joint ci ratio: 7.319159e-02	ci left: 2.171045e-03	ci right 2.336750e-03	k: 2861	n:1270000
Cons ci ratio: 1.345669e-03	ci left: 8.692356e-01	ci right 8.704068e-01	k: 1104674	n:1270000
KS ci ratio: 1.189009e-01	ci left: 8.042658e-04	ci right 9.066940e-04	k: 1085	n:1270000
SLC24A3   1270000 perm   803 sec   (1581 perm/sec)   p_kst 8.543307e-04   p_cons 8.698220e-01   p_joint 2.252756e-03

Joint ci ratio: 7.293726e-02	ci left: 2.169423e-03	ci right 2.334405e-03	k: 2881	n:1280000
Cons ci ratio: 1.340570e-03	ci left: 8.692095e-01	ci right 8.703763e-01	k: 1113336	n:1280000
KS ci ratio: 1.186283e-01	ci left: 8.017726e-04	ci right 9.036328e-04	k: 1090	n:1280000
SLC24A3   1280000 perm   814 sec   (1573 perm/sec)   p_kst 8.515625e-04   p_cons 8.697938e-01   p_joint 2.250781e-03

Joint ci ratio: 7.259786e-02	ci left: 2.173155e-03	ci right 2.337619e-03	k: 2908	n:1290000
Cons ci ratio: 1.335345e-03	ci left: 8.692150e-01	ci right 8.703772e-01	k: 1122038	n:1290000
KS ci ratio: 1.179811e-01	ci left: 8.045845e-04	ci right 9.062052e-04	k: 1102	n:1290000
SLC24A3   1290000 perm   825 sec   (1564 perm/sec)   p_kst 8.542636e-04   p_cons 8.697969e-01   p_joint 2.254264e-03

Joint ci ratio: 7.293853e-02	ci left: 2.136046e-03	ci right 2.298492e-03	k: 2881	n:1300000
Cons ci ratio: 1.330506e-03	ci left: 8.691648e-01	ci right 8.703228e-01	k: 1130668	n:1300000
KS ci ratio: 1.175556e-01	ci left: 8.043679e-04	ci right 9.055695e-04	k: 1110	n:1300000
SLC24A3   1300000 perm   835 sec   (1556 perm/sec)   p_kst 8.538462e-04   p_cons 8.697446e-01   p_joint 2.216154e-03

Joint ci ratio: 7.416122e-02	ci left: 2.049301e-03	ci right 2.207875e-03	k: 2787	n:1310000
Cons ci ratio: 1.325554e-03	ci left: 8.691438e-01	ci right 8.702974e-01	k: 1139335	n:1310000
KS ci ratio: 1.171870e-01	ci left: 8.034143e-04	ci right 9.041571e-04	k: 1117	n:1310000
SLC24A3   1310000 perm   846 sec   (1548 perm/sec)   p_kst 8.526718e-04   p_cons 8.697214e-01   p_joint 2.127481e-03

Joint ci ratio: 7.468714e-02	ci left: 2.004778e-03	ci right 2.161056e-03	k: 2748	n:1320000
Cons ci ratio: 1.320816e-03	ci left: 8.690957e-01	ci right 8.702451e-01	k: 1147966	n:1320000
KS ci ratio: 1.167182e-01	ci left: 8.039466e-04	ci right 9.043250e-04	k: 1126	n:1320000
SLC24A3   1320000 perm   857 sec   (1540 perm/sec)   p_kst 8.530303e-04   p_cons 8.696712e-01   p_joint 2.081818e-03

Joint ci ratio: 7.439003e-02	ci left: 2.005938e-03	ci right 2.161657e-03	k: 2770	n:1330000
Cons ci ratio: 1.315639e-03	ci left: 8.691327e-01	ci right 8.702777e-01	k: 1156709	n:1330000
KS ci ratio: 1.162037e-01	ci left: 8.052017e-04	ci right 9.052632e-04	k: 1136	n:1330000
SLC24A3   1330000 perm   868 sec   (1532 perm/sec)   p_kst 8.541353e-04   p_cons 8.697060e-01   p_joint 2.082707e-03

Joint ci ratio: 7.405660e-02	ci left: 2.009279e-03	ci right 2.164528e-03	k: 2795	n:1340000
Cons ci ratio: 1.310937e-03	ci left: 8.690975e-01	ci right 8.702383e-01	k: 1165356	n:1340000
KS ci ratio: 1.157465e-01	ci left: 8.057143e-04	ci right 9.054187e-04	k: 1145	n:1340000
SLC24A3   1340000 perm   879 sec   (1525 perm/sec)   p_kst 8.544776e-04   p_cons 8.696687e-01   p_joint 2.085821e-03

Joint ci ratio: 7.376692e-02	ci left: 2.010390e-03	ci right 2.165091e-03	k: 2817	n:1350000
Cons ci ratio: 1.306186e-03	ci left: 8.690798e-01	ci right 8.702164e-01	k: 1174026	n:1350000
KS ci ratio: 1.151948e-01	ci left: 8.076589e-04	ci right 9.070952e-04	k: 1156	n:1350000
SLC24A3   1350000 perm   890 sec   (1517 perm/sec)   p_kst 8.562963e-04   p_cons 8.696489e-01   p_joint 2.086667e-03

Joint ci ratio: 7.345471e-02	ci left: 2.012931e-03	ci right 2.167143e-03	k: 2841	n:1360000
Cons ci ratio: 1.301441e-03	ci left: 8.690705e-01	ci right 8.702030e-01	k: 1182707	n:1360000
KS ci ratio: 1.148974e-01	ci left: 8.060050e-04	ci right 9.049641e-04	k: 1162	n:1360000
SLC24A3   1360000 perm   901 sec   (1509 perm/sec)   p_kst 8.544118e-04   p_cons 8.696375e-01   p_joint 2.088971e-03

Joint ci ratio: 7.319762e-02	ci left: 2.012568e-03	ci right 2.166191e-03	k: 2861	n:1370000
Cons ci ratio: 1.296412e-03	ci left: 8.691198e-01	ci right 8.702480e-01	k: 1191468	n:1370000
KS ci ratio: 1.142604e-01	ci left: 8.093389e-04	ci right 9.081193e-04	k: 1175	n:1370000
SLC24A3   1370000 perm   912 sec   (1501 perm/sec)   p_kst 8.576642e-04   p_cons 8.696847e-01   p_joint 2.088321e-03

Joint ci ratio: 7.287990e-02	ci left: 2.015770e-03	ci right 2.168941e-03	k: 2886	n:1380000
Cons ci ratio: 1.291764e-03	ci left: 8.691118e-01	ci right 8.702359e-01	k: 1200151	n:1380000
KS ci ratio: 1.139701e-01	ci left: 8.076978e-04	ci right 9.060106e-04	k: 1181	n:1380000
SLC24A3   1380000 perm   924 sec   (1494 perm/sec)   p_kst 8.557971e-04   p_cons 8.696746e-01   p_joint 2.091304e-03

Joint ci ratio: 7.275429e-02	ci left: 2.008331e-03	ci right 2.160662e-03	k: 2896	n:1390000
Cons ci ratio: 1.287157e-03	ci left: 8.691054e-01	ci right 8.702255e-01	k: 1208836	n:1390000
KS ci ratio: 1.134910e-01	ci left: 8.088767e-04	ci right 9.068914e-04	k: 1191	n:1390000
SLC24A3   1390000 perm   935 sec   (1486 perm/sec)   p_kst 8.568345e-04   p_cons 8.696662e-01   p_joint 2.083453e-03

Joint ci ratio: 7.251693e-02	ci left: 2.007311e-03	ci right 2.159047e-03	k: 2915	n:1400000
Cons ci ratio: 1.282368e-03	ci left: 8.691398e-01	ci right 8.702558e-01	k: 1217578	n:1400000
KS ci ratio: 1.130179e-01	ci left: 8.100395e-04	ci right 9.077586e-04	k: 1201	n:1400000
SLC24A3   1400000 perm   947 sec   (1479 perm/sec)   p_kst 8.578571e-04   p_cons 8.696986e-01   p_joint 2.082143e-03

Joint ci ratio: 7.220795e-02	ci left: 2.010484e-03	ci right 2.161786e-03	k: 2940	n:1410000
Cons ci ratio: 1.277889e-03	ci left: 8.691283e-01	ci right 8.702404e-01	k: 1226256	n:1410000
KS ci ratio: 1.126437e-01	ci left: 8.098082e-04	ci right 9.071545e-04	k: 1209	n:1410000
SLC24A3   1410000 perm   958 sec   (1471 perm/sec)   p_kst 8.574468e-04   p_cons 8.696851e-01   p_joint 2.085106e-03

Joint ci ratio: 7.187860e-02	ci left: 2.014997e-03	ci right 2.165918e-03	k: 2967	n:1420000
Cons ci ratio: 1.273333e-03	ci left: 8.691389e-01	ci right 8.702470e-01	k: 1234965	n:1420000
KS ci ratio: 1.121810e-01	ci left: 8.109496e-04	ci right 9.080062e-04	k: 1219	n:1420000
SLC24A3   1420000 perm   970 sec   (1464 perm/sec)   p_kst 8.584507e-04   p_cons 8.696937e-01   p_joint 2.089437e-03

Joint ci ratio: 7.157768e-02	ci left: 2.018076e-03	ci right 2.168568e-03	k: 2992	n:1430000
Cons ci ratio: 1.268728e-03	ci left: 8.691668e-01	ci right 8.702709e-01	k: 1243699	n:1430000
KS ci ratio: 1.118150e-01	ci left: 8.107163e-04	ci right 9.074076e-04	k: 1227	n:1430000
SLC24A3   1430000 perm   982 sec   (1456 perm/sec)   p_kst 8.580420e-04   p_cons 8.697196e-01   p_joint 2.092308e-03

Joint ci ratio: 7.128050e-02	ci left: 2.021112e-03	ci right 2.171179e-03	k: 3017	n:1440000
Cons ci ratio: 1.264343e-03	ci left: 8.691637e-01	ci right 8.702640e-01	k: 1252389	n:1440000
KS ci ratio: 1.113625e-01	ci left: 8.118370e-04	ci right 9.082443e-04	k: 1237	n:1440000
SLC24A3   1440000 perm   994 sec   (1448 perm/sec)   p_kst 8.590278e-04   p_cons 8.697146e-01   p_joint 2.095139e-03

Joint ci ratio: 7.125736e-02	ci left: 2.008528e-03	ci right 2.157610e-03	k: 3019	n:1450000
Cons ci ratio: 1.259922e-03	ci left: 8.691752e-01	ci right 8.702716e-01	k: 1261100	n:1450000
KS ci ratio: 1.107379e-01	ci left: 8.156252e-04	ci right 9.119037e-04	k: 1251	n:1450000
SLC24A3   1450000 perm   1006 sec   (1441 perm/sec)   p_kst 8.627586e-04   p_cons 8.697241e-01   p_joint 2.082069e-03

Joint ci ratio: 7.101089e-02	ci left: 2.008899e-03	ci right 2.157471e-03	k: 3040	n:1460000
Cons ci ratio: 1.255605e-03	ci left: 8.691762e-01	ci right 8.702689e-01	k: 1269796	n:1460000
KS ci ratio: 1.105175e-01	ci left: 8.133686e-04	ci right 9.091772e-04	k: 1256	n:1460000
SLC24A3   1460000 perm   1018 sec   (1435 perm/sec)   p_kst 8.602740e-04   p_cons 8.697233e-01   p_joint 2.082192e-03

Joint ci ratio: 7.150793e-02	ci left: 1.967169e-03	ci right 2.113716e-03	k: 2998	n:1470000
Cons ci ratio: 1.251591e-03	ci left: 8.691302e-01	ci right 8.702193e-01	k: 1278423	n:1470000
KS ci ratio: 1.099936e-01	ci left: 8.157737e-04	ci right 9.113806e-04	k: 1268	n:1470000
SLC24A3   1470000 perm   1030 sec   (1428 perm/sec)   p_kst 8.625850e-04   p_cons 8.696755e-01   p_joint 2.039456e-03

Joint ci ratio: 7.141305e-02	ci left: 1.959186e-03	ci right 2.104936e-03	k: 3006	n:1480000
Cons ci ratio: 1.247224e-03	ci left: 8.691559e-01	ci right 8.702413e-01	k: 1287155	n:1480000
KS ci ratio: 1.094771e-01	ci left: 8.181473e-04	ci right 9.135531e-04	k: 1280	n:1480000
SLC24A3   1480000 perm   1042 sec   (1420 perm/sec)   p_kst 8.648649e-04   p_cons 8.696993e-01   p_joint 2.031081e-03

Joint ci ratio: 7.146118e-02	ci left: 1.943400e-03	ci right 2.088077e-03	k: 3002	n:1490000
Cons ci ratio: 1.243050e-03	ci left: 8.691544e-01	ci right 8.702361e-01	k: 1295847	n:1490000
KS ci ratio: 1.089678e-01	ci left: 8.204901e-04	ci right 9.156954e-04	k: 1292	n:1490000
SLC24A3   1490000 perm   1054 sec   (1413 perm/sec)   p_kst 8.671141e-04   p_cons 8.696960e-01   p_joint 2.014765e-03

Joint ci ratio: 7.213878e-02	ci left: 1.893779e-03	ci right 2.036155e-03	k: 2946	n:1500000
Cons ci ratio: 1.239042e-03	ci left: 8.691302e-01	ci right 8.702084e-01	k: 1304505	n:1500000
KS ci ratio: 1.087159e-01	ci left: 8.189112e-04	ci right 9.136997e-04	k: 1298	n:1500000
SLC24A3   1500000 perm   1066 sec   (1407 perm/sec)   p_kst 8.653333e-04   p_cons 8.696700e-01   p_joint 1.964000e-03

Joint ci ratio: 7.190737e-02	ci left: 1.893593e-03	ci right 2.035480e-03	k: 2965	n:1510000
Cons ci ratio: 1.234834e-03	ci left: 8.691501e-01	ci right 8.702247e-01	k: 1313229	n:1510000
KS ci ratio: 1.084243e-01	ci left: 8.179978e-04	ci right 9.124103e-04	k: 1305	n:1510000
SLC24A3   1510000 perm   1079 sec   (1400 perm/sec)   p_kst 8.642384e-04   p_cons 8.696881e-01   p_joint 1.963576e-03

Joint ci ratio: 7.167817e-02	ci left: 1.893411e-03	ci right 2.034813e-03	k: 2984	n:1520000
Cons ci ratio: 1.230700e-03	ci left: 8.691638e-01	ci right 8.702348e-01	k: 1321944	n:1520000
KS ci ratio: 1.080526e-01	ci left: 8.183771e-04	ci right 9.124889e-04	k: 1314	n:1520000
SLC24A3   1520000 perm   1091 sec   (1393 perm/sec)   p_kst 8.644737e-04   p_cons 8.697000e-01   p_joint 1.963158e-03

Joint ci ratio: 7.377600e-02	ci left: 1.773866e-03	ci right 1.910384e-03	k: 2817	n:1530000
Cons ci ratio: 1.226679e-03	ci left: 8.691643e-01	ci right 8.702317e-01	k: 1330639	n:1530000
KS ci ratio: 1.076034e-01	ci left: 8.200239e-04	ci right 9.139082e-04	k: 1325	n:1530000
SLC24A3   1530000 perm   1104 sec   (1386 perm/sec)   p_kst 8.660131e-04   p_cons 8.696987e-01   p_joint 1.841176e-03

Joint ci ratio: 7.361957e-02	ci left: 1.769996e-03	ci right 1.905914e-03	k: 2829	n:1540000
Cons ci ratio: 1.222837e-03	ci left: 8.691387e-01	ci right 8.702028e-01	k: 1339294	n:1540000
KS ci ratio: 1.070796e-01	ci left: 8.229140e-04	ci right 9.166418e-04	k: 1338	n:1540000
SLC24A3   1540000 perm   1116 sec   (1380 perm/sec)   p_kst 8.688312e-04   p_cons 8.696714e-01   p_joint 1.837013e-03

Joint ci ratio: 7.336077e-02	ci left: 1.771243e-03	ci right 1.906759e-03	k: 2849	n:1550000
Cons ci ratio: 1.218878e-03	ci left: 8.691419e-01	ci right 8.702025e-01	k: 1347993	n:1550000
KS ci ratio: 1.066424e-01	ci left: 8.245120e-04	ci right 9.180143e-04	k: 1349	n:1550000
SLC24A3   1550000 perm   1129 sec   (1373 perm/sec)   p_kst 8.703226e-04   p_cons 8.696729e-01   p_joint 1.838065e-03

Joint ci ratio: 7.300281e-02	ci left: 1.777509e-03	ci right 1.912813e-03	k: 2877	n:1560000
Cons ci ratio: 1.214929e-03	ci left: 8.691502e-01	ci right 8.702074e-01	k: 1356700	n:1560000
KS ci ratio: 1.060546e-01	ci left: 8.285864e-04	ci right 9.220005e-04	k: 1364	n:1560000
SLC24A3   1560000 perm   1141 sec   (1367 perm/sec)   p_kst 8.743590e-04   p_cons 8.696795e-01   p_joint 1.844231e-03

Joint ci ratio: 7.393561e-02	ci left: 1.721168e-03	ci right 1.853929e-03	k: 2805	n:1570000
Cons ci ratio: 1.211104e-03	ci left: 8.691424e-01	ci right 8.701963e-01	k: 1365382	n:1570000
KS ci ratio: 1.057067e-01	ci left: 8.288895e-04	ci right 9.220121e-04	k: 1373	n:1570000
SLC24A3   1570000 perm   1154 sec   (1361 perm/sec)   p_kst 8.745223e-04   p_cons 8.696701e-01   p_joint 1.786624e-03

Joint ci ratio: 7.373885e-02	ci left: 1.719593e-03	ci right 1.851864e-03	k: 2820	n:1580000
Cons ci ratio: 1.207184e-03	ci left: 8.691595e-01	ci right 8.702100e-01	k: 1374103	n:1580000
KS ci ratio: 1.054385e-01	ci left: 8.279567e-04	ci right 9.207240e-04	k: 1380	n:1580000
SLC24A3   1580000 perm   1166 sec   (1355 perm/sec)   p_kst 8.734177e-04   p_cons 8.696854e-01   p_joint 1.784810e-03

Joint ci ratio: 7.364778e-02	ci left: 1.713099e-03	ci right 1.844701e-03	k: 2827	n:1590000
Cons ci ratio: 1.203248e-03	ci left: 8.691865e-01	ci right 8.702336e-01	k: 1382840	n:1590000
KS ci ratio: 1.049833e-01	ci left: 8.300981e-04	ci right 9.226789e-04	k: 1392	n:1590000
SLC24A3   1590000 perm   1179 sec   (1349 perm/sec)   p_kst 8.754717e-04   p_cons 8.697107e-01   p_joint 1.777987e-03

Joint ci ratio: 7.349216e-02	ci left: 1.709754e-03	ci right 1.840810e-03	k: 2839	n:1600000
Cons ci ratio: 1.199392e-03	ci left: 8.692050e-01	ci right 8.702487e-01	k: 1391564	n:1600000
KS ci ratio: 1.048330e-01	ci left: 8.273443e-04	ci right 9.194778e-04	k: 1396	n:1600000
SLC24A3   1600000 perm   1192 sec   (1342 perm/sec)   p_kst 8.725000e-04   p_cons 8.697275e-01   p_joint 1.774375e-03

Joint ci ratio: 7.323469e-02	ci left: 1.711329e-03	ci right 1.842026e-03	k: 2859	n:1610000
Cons ci ratio: 1.195600e-03	ci left: 8.692182e-01	ci right 8.702587e-01	k: 1400280	n:1610000
KS ci ratio: 1.045714e-01	ci left: 8.264395e-04	ci right 9.182284e-04	k: 1403	n:1610000
SLC24A3   1610000 perm   1205 sec   (1336 perm/sec)   p_kst 8.714286e-04   p_cons 8.697391e-01   p_joint 1.775776e-03

Joint ci ratio: 7.294186e-02	ci left: 1.714704e-03	ci right 1.845113e-03	k: 2882	n:1620000
Cons ci ratio: 1.191838e-03	ci left: 8.692326e-01	ci right 8.702698e-01	k: 1408998	n:1620000
KS ci ratio: 1.042009e-01	ci left: 8.273497e-04	ci right 9.188942e-04	k: 1413	n:1620000
SLC24A3   1620000 perm   1218 sec   (1330 perm/sec)   p_kst 8.722222e-04   p_cons 8.697519e-01   p_joint 1.779012e-03

Joint ci ratio: 7.281586e-02	ci left: 1.710207e-03	ci right 1.840040e-03	k: 2892	n:1630000
Cons ci ratio: 1.188213e-03	ci left: 8.692271e-01	ci right 8.702611e-01	k: 1417684	n:1630000
KS ci ratio: 1.040173e-01	ci left: 8.252615e-04	ci right 9.164042e-04	k: 1418	n:1630000
SLC24A3   1630000 perm   1231 sec   (1324 perm/sec)   p_kst 8.699387e-04   p_cons 8.697448e-01   p_joint 1.774233e-03

Joint ci ratio: 7.259038e-02	ci left: 1.710555e-03	ci right 1.839995e-03	k: 2910	n:1640000
Cons ci ratio: 1.184539e-03	ci left: 8.692376e-01	ci right 8.702684e-01	k: 1426396	n:1640000
KS ci ratio: 1.037254e-01	ci left: 8.249807e-04	ci right 9.158211e-04	k: 1426	n:1640000
SLC24A3   1640000 perm   1244 sec   (1319 perm/sec)   p_kst 8.695122e-04   p_cons 8.697537e-01   p_joint 1.774390e-03

Joint ci ratio: 7.232988e-02	ci left: 1.712685e-03	ci right 1.841801e-03	k: 2931	n:1650000
Cons ci ratio: 1.180914e-03	ci left: 8.692449e-01	ci right 8.702726e-01	k: 1435103	n:1650000
KS ci ratio: 1.033638e-01	ci left: 8.258845e-04	ci right 9.164882e-04	k: 1436	n:1650000
SLC24A3   1650000 perm   1257 sec   (1312 perm/sec)   p_kst 8.703030e-04   p_cons 8.697594e-01   p_joint 1.776364e-03

Joint ci ratio: 7.215789e-02	ci left: 1.710649e-03	ci right 1.839292e-03	k: 2945	n:1660000
Cons ci ratio: 1.177347e-03	ci left: 8.692473e-01	ci right 8.702719e-01	k: 1443802	n:1660000
KS ci ratio: 1.031487e-01	ci left: 8.244304e-04	ci right 9.146750e-04	k: 1442	n:1660000
SLC24A3   1660000 perm   1271 sec   (1306 perm/sec)   p_kst 8.686747e-04   p_cons 8.697602e-01   p_joint 1.774096e-03

Joint ci ratio: 7.266659e-02	ci left: 1.676298e-03	ci right 1.803285e-03	k: 2904	n:1670000
Cons ci ratio: 1.173983e-03	ci left: 8.692167e-01	ci right 8.702383e-01	k: 1452446	n:1670000
KS ci ratio: 1.028640e-01	ci left: 8.241607e-04	ci right 9.141117e-04	k: 1450	n:1670000
SLC24A3   1670000 perm   1284 sec   (1300 perm/sec)   p_kst 8.682635e-04   p_cons 8.697281e-01   p_joint 1.738922e-03

Joint ci ratio: 7.251709e-02	ci left: 1.673333e-03	ci right 1.799823e-03	k: 2916	n:1680000
Cons ci ratio: 1.170562e-03	ci left: 8.692031e-01	ci right 8.702218e-01	k: 1461118	n:1680000
KS ci ratio: 1.026874e-01	ci left: 8.221546e-04	ci right 9.117233e-04	k: 1455	n:1680000
SLC24A3   1680000 perm   1298 sec   (1295 perm/sec)   p_kst 8.660714e-04   p_cons 8.697131e-01   p_joint 1.735714e-03

Joint ci ratio: 7.420567e-02	ci left: 1.587336e-03	ci right 1.710240e-03	k: 2785	n:1690000
Cons ci ratio: 1.167124e-03	ci left: 8.691987e-01	ci right 8.702143e-01	k: 1469805	n:1690000
KS ci ratio: 1.024064e-01	ci left: 8.219021e-04	ci right 9.111835e-04	k: 1463	n:1690000
SLC24A3   1690000 perm   1311 sec   (1289 perm/sec)   p_kst 8.656805e-04   p_cons 8.697071e-01   p_joint 1.647929e-03

Joint ci ratio: 6.858993e-02	ci left: 1.851860e-03	ci right 1.983964e-03	k: 3259	n:1700000
Cons ci ratio: 1.163605e-03	ci left: 8.692160e-01	ci right 8.702286e-01	k: 1478529	n:1700000
KS ci ratio: 1.020238e-01	ci left: 8.233726e-04	ci right 9.124596e-04	k: 1474	n:1700000
SLC24A3   1700000 perm   1324 sec   (1284 perm/sec)   p_kst 8.670588e-04   p_cons 8.697229e-01   p_joint 1.917059e-03

Joint ci ratio: 6.833874e-02	ci left: 1.854825e-03	ci right 1.986637e-03	k: 3283	n:1710000
Cons ci ratio: 1.160282e-03	ci left: 8.692010e-01	ci right 8.702106e-01	k: 1487198	n:1710000
KS ci ratio: 1.015429e-01	ci left: 8.265364e-04	ci right 9.155189e-04	k: 1488	n:1710000
SLC24A3   1710000 perm   1338 sec   (1278 perm/sec)   p_kst 8.701754e-04   p_cons 8.697064e-01   p_joint 1.919883e-03

Joint ci ratio: 6.809029e-02	ci left: 1.857757e-03	ci right 1.989278e-03	k: 3307	n:1720000
Cons ci ratio: 1.156940e-03	ci left: 8.691954e-01	ci right 8.702022e-01	k: 1495883	n:1720000
KS ci ratio: 1.013051e-01	ci left: 8.256974e-04	ci right 9.143691e-04	k: 1495	n:1720000
SLC24A3   1720000 perm   1352 sec   (1272 perm/sec)   p_kst 8.691860e-04   p_cons 8.696994e-01   p_joint 1.922674e-03

Joint ci ratio: 6.784453e-02	ci left: 1.860656e-03	ci right 1.991888e-03	k: 3331	n:1730000
Cons ci ratio: 1.153518e-03	ci left: 8.692114e-01	ci right 8.702151e-01	k: 1504605	n:1730000
KS ci ratio: 1.008676e-01	ci left: 8.282491e-04	ci right 9.167881e-04	k: 1508	n:1730000
SLC24A3   1730000 perm   1365 sec   (1267 perm/sec)   p_kst 8.716763e-04   p_cons 8.697139e-01   p_joint 1.925434e-03

Joint ci ratio: 6.768228e-02	ci left: 1.859002e-03	ci right 1.989791e-03	k: 3347	n:1740000
Cons ci ratio: 1.150138e-03	ci left: 8.692248e-01	ci right 8.702257e-01	k: 1513323	n:1740000
KS ci ratio: 1.006013e-01	ci left: 8.279710e-04	ci right 9.162327e-04	k: 1516	n:1740000
SLC24A3   1740000 perm   1379 sec   (1262 perm/sec)   p_kst 8.712644e-04   p_cons 8.697259e-01   p_joint 1.923563e-03

Joint ci ratio: 6.754132e-02	ci left: 1.856244e-03	ci right 1.986556e-03	k: 3361	n:1750000
Cons ci ratio: 1.146804e-03	ci left: 8.692347e-01	ci right 8.702327e-01	k: 1522035	n:1750000
KS ci ratio: 1.004031e-01	ci left: 8.265821e-04	ci right 9.145118e-04	k: 1522	n:1750000
SLC24A3   1750000 perm   1393 sec   (1256 perm/sec)   p_kst 8.697143e-04   p_cons 8.697343e-01   p_joint 1.920571e-03

Joint ci ratio: 6.729148e-02	ci left: 1.859662e-03	ci right 1.989713e-03	k: 3386	n:1760000
Cons ci ratio: 1.143534e-03	ci left: 8.692376e-01	ci right 8.702327e-01	k: 1530735	n:1760000
KS ci ratio: 1.000424e-01	ci left: 8.279789e-04	ci right 9.157223e-04	k: 1533	n:1760000
SLC24A3   1760000 perm   1407 sec   (1251 perm/sec)   p_kst 8.710227e-04   p_cons 8.697358e-01   p_joint 1.923864e-03

Joint ci ratio: 6.567946e-02	ci left: 1.942496e-03	ci right 2.074961e-03	k: 3554	n:1770000
Cons ci ratio: 1.140323e-03	ci left: 8.692343e-01	ci right 8.702266e-01	k: 1539424	n:1770000
KS ci ratio: 1.001079e-01	ci left: 8.221993e-04	ci right 9.093906e-04	k: 1531	n:1770000
SLC24A3   1770000 perm   1421 sec   (1246 perm/sec)   p_kst 8.649718e-04   p_cons 8.697311e-01   p_joint 2.007910e-03

Joint ci ratio: 6.548631e-02	ci left: 1.943187e-03	ci right 2.075295e-03	k: 3575	n:1780000
Cons ci ratio: 1.137045e-03	ci left: 8.692496e-01	ci right 8.702391e-01	k: 1548146	n:1780000
KS ci ratio: 9.984760e-02	ci left: 8.219622e-04	ci right 9.088884e-04	k: 1539	n:1780000
SLC24A3   1780000 perm   1435 sec   (1240 perm/sec)   p_kst 8.646067e-04   p_cons 8.697449e-01   p_joint 2.008427e-03

Outputting figure to mutsig2_images.part000000000159/SLC24A3.6_2003_1780000_0.00086461_0.86974_0.0020084.png
                gene_name: SLC24A3
               theta_stop: 0.100 
                    nperm: 1780000 
                     p_ks: 0.00086 
        ci_ks_bounds_left: 0.00082 
       ci_ks_bounds_right: 0.00091 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 22 percent done.
SLC24A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
SLC24A5   10000 perm   2 sec   (6547 perm/sec)   p_kst 4.270000e-02   p_cons 7.451000e-01   p_joint 1.298000e-01

Joint ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
Cons ci ratio: 1.551667e-02	ci left: 7.554301e-01	ci right 7.672938e-01	k: 15228	n:20000
KS ci ratio: 1.304457e-01	ci left: 4.037551e-02	ci right 4.605825e-02	k: 863	n:20000
SLC24A5   20000 perm   3 sec   (5863 perm/sec)   p_kst 4.315000e-02   p_cons 7.614000e-01   p_joint 8.660000e-02

Joint ci ratio: 6.977142e-02	ci left: 9.186873e-02	ci right 9.854323e-02	k: 2855	n:30000
Cons ci ratio: 1.237859e-02	ci left: 7.649267e-01	ci right 7.744877e-01	k: 23092	n:30000
KS ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
SLC24A5   30000 perm   5 sec   (5579 perm/sec)   p_kst 4.230000e-02   p_cons 7.697333e-01   p_joint 9.516667e-02

Joint ci ratio: 6.375444e-02	ci left: 8.359038e-02	ci right 8.911984e-02	k: 3453	n:40000
Cons ci ratio: 1.068186e-02	ci left: 7.668501e-01	ci right 7.751105e-01	k: 30840	n:40000
KS ci ratio: 9.360719e-02	ci left: 4.003064e-02	ci right 4.398620e-02	k: 1679	n:40000
SLC24A5   40000 perm   7 sec   (5405 perm/sec)   p_kst 4.197500e-02   p_cons 7.710000e-01   p_joint 8.632500e-02

Outputting figure to mutsig2_images.part000000000159/SLC24A5.6_1539_40000_0.041975_0.771_0.086325.png
                gene_name: SLC24A5
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 24 percent done.
SLC26A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
KS ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
SLC26A4   10000 perm   2 sec   (5514 perm/sec)   p_kst 4.095000e-01   p_cons 1.494000e-01   p_joint 2.944000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A4.6_2423_10000_0.4095_0.1494_0.2944.png
                gene_name: SLC26A4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 25 percent done.
SLC22A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
Cons ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
KS ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
SLC22A11   10000 perm   2 sec   (6508 perm/sec)   p_kst 1.737000e-01   p_cons 1.660000e-01   p_joint 1.609000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A11.5_1693_10000_0.1737_0.166_0.1609.png
                gene_name: SLC22A11
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 27 percent done.
SLC23A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
Cons ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
KS ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
SLC23A2   10000 perm   2 sec   (6001 perm/sec)   p_kst 1.477000e-01   p_cons 6.125000e-01   p_joint 3.350000e-01

Outputting figure to mutsig2_images.part000000000159/SLC23A2.5_2013_10000_0.1477_0.6125_0.335.png
                gene_name: SLC23A2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
SLC25A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668823e-02	ci left: 8.393860e-01	ci right 8.536115e-01	k: 8466	n:10000
Cons ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
KS ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
SLC25A10   10000 perm   2 sec   (6402 perm/sec)   p_kst 5.585000e-01   p_cons 5.098000e-01   p_joint 8.466000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A10.5_908_10000_0.5585_0.5098_0.8466.png
                gene_name: SLC25A10
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 31 percent done.
SLC25A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
Cons ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
KS ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
SLC25A12   10000 perm   2 sec   (6319 perm/sec)   p_kst 4.415000e-01   p_cons 7.880000e-02   p_joint 2.769000e-01

Joint ci ratio: 4.384973e-02	ci left: 2.791974e-01	ci right 2.917650e-01	k: 5709	n:20000
Cons ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
KS ci ratio: 3.165163e-02	ci left: 4.271161e-01	ci right 4.409031e-01	k: 8680	n:20000
SLC25A12   20000 perm   4 sec   (5689 perm/sec)   p_kst 4.340000e-01   p_cons 7.780000e-02   p_joint 2.854500e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A12.5_2109_20000_0.434_0.0778_0.28545.png
                gene_name: SLC25A12
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 33 percent done.
SLC25A37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
Cons ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
KS ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
SLC25A37   10000 perm   1 sec   (6742 perm/sec)   p_kst 5.710000e-02   p_cons 5.547000e-01   p_joint 1.858000e-01

Joint ci ratio: 7.513209e-02	ci left: 1.152809e-01	ci right 1.243300e-01	k: 2395	n:20000
Cons ci ratio: 2.492173e-02	ci left: 5.460272e-01	ci right 5.598574e-01	k: 11059	n:20000
KS ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
SLC25A37   20000 perm   3 sec   (5987 perm/sec)   p_kst 5.725000e-02   p_cons 5.529500e-01   p_joint 1.197500e-01

Joint ci ratio: 6.260894e-02	ci left: 1.119367e-01	ci right 1.192046e-01	k: 3466	n:30000
Cons ci ratio: 2.037297e-02	ci left: 5.467183e-01	ci right 5.580048e-01	k: 16571	n:30000
KS ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
SLC25A37   30000 perm   5 sec   (5712 perm/sec)   p_kst 5.503333e-02   p_cons 5.523667e-01   p_joint 1.155333e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A37.5_1033_30000_0.055033_0.55237_0.11553.png
                gene_name: SLC25A37
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
SLC25A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
Cons ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
KS ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
SLC25A6   10000 perm   1 sec   (7226 perm/sec)   p_kst 5.207000e-01   p_cons 3.651000e-01   p_joint 6.068000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A6.5_913_10000_0.5207_0.3651_0.6068.png
                gene_name: SLC25A6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 36 percent done.
SLC22A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
Cons ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
KS ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
SLC22A8   10000 perm   2 sec   (6444 perm/sec)   p_kst 8.743000e-01   p_cons 6.730000e-02   p_joint 3.081000e-01

Joint ci ratio: 3.325479e-02	ci left: 4.030724e-01	ci right 4.167538e-01	k: 8198	n:20000
Cons ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
KS ci ratio: 1.068729e-02	ci left: 8.658694e-01	ci right 8.752226e-01	k: 17412	n:20000
SLC22A8   20000 perm   3 sec   (5819 perm/sec)   p_kst 8.706000e-01   p_cons 6.680000e-02   p_joint 4.099000e-01

Joint ci ratio: 2.842014e-02	ci left: 3.825135e-01	ci right 3.935749e-01	k: 11641	n:30000
Cons ci ratio: 8.840946e-02	ci left: 5.877467e-02	ci right 6.424396e-02	k: 1844	n:30000
KS ci ratio: 8.639196e-03	ci left: 8.690106e-01	ci right 8.765838e-01	k: 26185	n:30000
SLC22A8   30000 perm   5 sec   (5523 perm/sec)   p_kst 8.728333e-01   p_cons 6.146667e-02   p_joint 3.880333e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A8.4_1669_30000_0.87283_0.061467_0.38803.png
                gene_name: SLC22A8
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 38 percent done.
SLC23A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.090116e-02	ci left: 6.070880e-01	ci right 6.262440e-01	k: 6167	n:10000
Cons ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
KS ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
SLC23A3   10000 perm   2 sec   (6330 perm/sec)   p_kst 5.173000e-01   p_cons 7.324000e-01   p_joint 6.167000e-01

Outputting figure to mutsig2_images.part000000000159/SLC23A3.4_1905_10000_0.5173_0.7324_0.6167.png
                gene_name: SLC23A3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 40 percent done.
SLC24A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
SLC24A4   10000 perm   2 sec   (6433 perm/sec)   p_kst 5.051000e-01   p_cons 1.115000e-01   p_joint 1.991000e-01

Joint ci ratio: 3.715958e-02	ci left: 3.508042e-01	ci right 3.641373e-01	k: 7149	n:20000
Cons ci ratio: 7.733037e-02	ci left: 1.094302e-01	ci right 1.182824e-01	k: 2276	n:20000
KS ci ratio: 2.741606e-02	ci left: 4.984955e-01	ci right 5.124029e-01	k: 10109	n:20000
SLC24A4   20000 perm   3 sec   (5736 perm/sec)   p_kst 5.054500e-01   p_cons 1.138000e-01   p_joint 3.574500e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A4.4_1886_20000_0.50545_0.1138_0.35745.png
                gene_name: SLC24A4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 42 percent done.
SLC25A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
Cons ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KS ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
SLC25A13   10000 perm   2 sec   (6241 perm/sec)   p_kst 5.531000e-01   p_cons 7.525000e-01   p_joint 6.478000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A13.4_2103_10000_0.5531_0.7525_0.6478.png
                gene_name: SLC25A13
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
SLC25A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
SLC25A14   10000 perm   1 sec   (6859 perm/sec)   p_kst 7.391000e-01   p_cons 9.500000e-02   p_joint 6.522000e-01

Joint ci ratio: 2.667197e-02	ci left: 5.122482e-01	ci right 5.261462e-01	k: 10384	n:20000
Cons ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
KS ci ratio: 1.671824e-02	ci left: 7.270621e-01	ci right 7.393701e-01	k: 14665	n:20000
SLC25A14   20000 perm   3 sec   (6122 perm/sec)   p_kst 7.332500e-01   p_cons 9.200000e-02   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A14.4_1018_20000_0.73325_0.092_0.5192.png
                gene_name: SLC25A14
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 45 percent done.
SLC27A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
Cons ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
SLC27A3   10000 perm   2 sec   (6254 perm/sec)   p_kst 1.792000e-01   p_cons 9.195000e-01   p_joint 4.825000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A3.4_2233_10000_0.1792_0.9195_0.4825.png
                gene_name: SLC27A3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 47 percent done.
SLC20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.062743e-02	ci left: 9.264756e-01	ci right 9.364713e-01	k: 9316	n:10000
KS ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
SLC20A1   10000 perm   2 sec   (6580 perm/sec)   p_kst 5.892000e-01   p_cons 9.316000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC20A1.3_2080_10000_0.5892_0.9316_1.png
                gene_name: SLC20A1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
SLC22A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
Cons ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
SLC22A18   10000 perm   1 sec   (6770 perm/sec)   p_kst 3.400000e-03   p_cons 5.650000e-02   p_joint 7.300000e-03

Joint ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
SLC22A18   20000 perm   3 sec   (6010 perm/sec)   p_kst 3.300000e-03   p_cons 5.425000e-02   p_joint 5.050000e-03

Joint ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
Cons ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
KS ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
SLC22A18   30000 perm   5 sec   (5751 perm/sec)   p_kst 3.100000e-03   p_cons 5.413333e-02   p_joint 1.600000e-03

Joint ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
Cons ci ratio: 8.120393e-02	ci left: 5.281022e-02	ci right 5.730465e-02	k: 2201	n:40000
KS ci ratio: 3.543541e-01	ci left: 2.510680e-03	ci right 3.613423e-03	k: 121	n:40000
SLC22A18   40000 perm   7 sec   (5549 perm/sec)   p_kst 3.025000e-03   p_cons 5.502500e-02   p_joint 6.500000e-04

Joint ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
Cons ci ratio: 7.325997e-02	ci left: 5.217241e-02	ci right 5.615955e-02	k: 2707	n:50000
KS ci ratio: 3.217416e-01	ci left: 2.484493e-03	ci right 3.454640e-03	k: 147	n:50000
SLC22A18   50000 perm   9 sec   (5425 perm/sec)   p_kst 2.940000e-03   p_cons 5.414000e-02   p_joint 5.800000e-04

Joint ci ratio: 7.155059e-01	ci left: 3.237191e-04	ci right 6.940741e-04	k: 29	n:60000
Cons ci ratio: 6.703636e-02	ci left: 5.210637e-02	ci right 5.573693e-02	k: 3234	n:60000
KS ci ratio: 2.885404e-01	ci left: 2.624630e-03	ci right 3.524501e-03	k: 183	n:60000
SLC22A18   60000 perm   11 sec   (5297 perm/sec)   p_kst 3.050000e-03   p_cons 5.390000e-02   p_joint 4.833333e-04

Joint ci ratio: 6.928013e-01	ci left: 3.009192e-04	ci right 6.285420e-04	k: 31	n:70000
Cons ci ratio: 6.194377e-02	ci left: 5.243557e-02	ci right 5.580151e-02	k: 3787	n:70000
KS ci ratio: 2.754100e-01	ci left: 2.488626e-03	ci right 3.296313e-03	k: 201	n:70000
SLC22A18   70000 perm   14 sec   (5181 perm/sec)   p_kst 2.871429e-03   p_cons 5.410000e-02   p_joint 4.428571e-04

Joint ci ratio: 7.155521e-01	ci left: 2.427850e-04	ci right 5.205693e-04	k: 29	n:80000
Cons ci ratio: 5.802213e-02	ci left: 5.240677e-02	ci right 5.555068e-02	k: 4317	n:80000
KS ci ratio: 2.592365e-01	ci left: 2.480783e-03	ci right 3.230991e-03	k: 227	n:80000
SLC22A18   80000 perm   16 sec   (5083 perm/sec)   p_kst 2.837500e-03   p_cons 5.396250e-02   p_joint 3.625000e-04

Joint ci ratio: 4.200626e-01	ci left: 7.643900e-04	ci right 1.179971e-03	k: 86	n:90000
Cons ci ratio: 5.480377e-02	ci left: 5.231287e-02	ci right 5.527153e-02	k: 4840	n:90000
KS ci ratio: 2.436971e-01	ci left: 2.517490e-03	ci right 3.226266e-03	k: 257	n:90000
SLC22A18   90000 perm   18 sec   (4992 perm/sec)   p_kst 2.855556e-03   p_cons 5.377778e-02   p_joint 9.555556e-04

Joint ci ratio: 4.436772e-01	ci left: 6.077183e-04	ci right 9.622753e-04	k: 77	n:100000
Cons ci ratio: 5.188393e-02	ci left: 5.259723e-02	ci right 5.540871e-02	k: 5399	n:100000
KS ci ratio: 2.335176e-01	ci left: 2.481990e-03	ci right 3.147369e-03	k: 280	n:100000
SLC22A18   100000 perm   20 sec   (4906 perm/sec)   p_kst 2.800000e-03   p_cons 5.399000e-02   p_joint 7.700000e-04

Joint ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
Cons ci ratio: 4.932473e-02	ci left: 5.295909e-02	ci right 5.564629e-02	k: 5972	n:110000
KS ci ratio: 2.216103e-01	ci left: 2.522123e-03	ci right 3.159084e-03	k: 311	n:110000
SLC22A18   110000 perm   23 sec   (4824 perm/sec)   p_kst 2.827273e-03   p_cons 5.429091e-02   p_joint 8.181818e-04

Joint ci ratio: 4.717749e-01	ci left: 4.400649e-04	ci right 7.183305e-04	k: 68	n:120000
Cons ci ratio: 4.720188e-02	ci left: 5.306568e-02	ci right 5.563924e-02	k: 6521	n:120000
KS ci ratio: 2.110482e-01	ci left: 2.564177e-03	ci right 3.176906e-03	k: 343	n:120000
SLC22A18   120000 perm   25 sec   (4741 perm/sec)   p_kst 2.858333e-03   p_cons 5.434167e-02   p_joint 5.666667e-04

Joint ci ratio: 4.586707e-01	ci left: 4.333750e-04	ci right 6.974275e-04	k: 72	n:130000
Cons ci ratio: 4.535181e-02	ci left: 5.311232e-02	ci right 5.558453e-02	k: 7064	n:130000
KS ci ratio: 2.048931e-01	ci left: 2.520053e-03	ci right 3.102476e-03	k: 364	n:130000
SLC22A18   130000 perm   28 sec   (4661 perm/sec)   p_kst 2.800000e-03   p_cons 5.433846e-02   p_joint 5.538462e-04

Joint ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
Cons ci ratio: 4.372174e-02	ci left: 5.311157e-02	ci right 5.549264e-02	k: 7601	n:140000
KS ci ratio: 1.997664e-01	ci left: 2.468882e-03	ci right 3.023460e-03	k: 383	n:140000
SLC22A18   140000 perm   31 sec   (4588 perm/sec)   p_kst 2.735714e-03   p_cons 5.429286e-02   p_joint 5.428571e-04

Joint ci ratio: 4.787957e-01	ci left: 3.403118e-04	ci right 5.597544e-04	k: 66	n:150000
Cons ci ratio: 4.223648e-02	ci left: 5.315851e-02	ci right 5.545875e-02	k: 8145	n:150000
KS ci ratio: 1.938042e-01	ci left: 2.456406e-03	ci right 2.989771e-03	k: 407	n:150000
SLC22A18   150000 perm   33 sec   (4512 perm/sec)   p_kst 2.713333e-03   p_cons 5.430000e-02   p_joint 4.400000e-04

Joint ci ratio: 4.525351e-01	ci left: 3.631789e-04	ci right 5.805921e-04	k: 74	n:160000
Cons ci ratio: 4.088304e-02	ci left: 5.322554e-02	ci right 5.545314e-02	k: 8693	n:160000
KS ci ratio: 1.870477e-01	ci left: 2.481447e-03	ci right 2.999333e-03	k: 437	n:160000
SLC22A18   160000 perm   36 sec   (4436 perm/sec)   p_kst 2.731250e-03   p_cons 5.433125e-02   p_joint 4.625000e-04

Joint ci ratio: 2.172339e-01	ci left: 1.704150e-03	ci right 2.124891e-03	k: 324	n:170000
Cons ci ratio: 3.959302e-02	ci left: 5.343724e-02	ci right 5.560151e-02	k: 9267	n:170000
KS ci ratio: 1.811461e-01	ci left: 2.498209e-03	ci right 3.001339e-03	k: 466	n:170000
SLC22A18   170000 perm   39 sec   (4360 perm/sec)   p_kst 2.741176e-03   p_cons 5.451176e-02   p_joint 1.905882e-03

Joint ci ratio: 2.239003e-01	ci left: 1.509732e-03	ci right 1.895490e-03	k: 305	n:180000
Cons ci ratio: 3.851317e-02	ci left: 5.337315e-02	ci right 5.547456e-02	k: 9795	n:180000
KS ci ratio: 1.772089e-01	ci left: 2.470851e-03	ci right 2.956496e-03	k: 487	n:180000
SLC22A18   180000 perm   42 sec   (4301 perm/sec)   p_kst 2.705556e-03   p_cons 5.441667e-02   p_joint 1.694444e-03

Joint ci ratio: 2.316193e-01	ci left: 1.330999e-03	ci right 1.684490e-03	k: 285	n:190000
Cons ci ratio: 3.748640e-02	ci left: 5.340000e-02	ci right 5.544520e-02	k: 10339	n:190000
KS ci ratio: 1.719995e-01	ci left: 2.491804e-03	ci right 2.965676e-03	k: 517	n:190000
SLC22A18   190000 perm   45 sec   (4235 perm/sec)   p_kst 2.721053e-03   p_cons 5.441579e-02   p_joint 1.500000e-03

Joint ci ratio: 4.899204e-01	ci left: 2.420629e-04	ci right 4.030041e-04	k: 63	n:200000
Cons ci ratio: 3.863837e-02	ci left: 4.799853e-02	ci right 4.989457e-02	k: 9788	n:200000
KS ci ratio: 1.676850e-01	ci left: 2.496476e-03	ci right 2.958124e-03	k: 544	n:200000
SLC22A18   200000 perm   48 sec   (4170 perm/sec)   p_kst 2.720000e-03   p_cons 4.894000e-02   p_joint 3.150000e-04

Joint ci ratio: 4.788267e-01	ci left: 2.430766e-04	ci right 3.998314e-04	k: 66	n:210000
Cons ci ratio: 3.769649e-02	ci left: 4.804755e-02	ci right 4.989826e-02	k: 10283	n:210000
KS ci ratio: 1.639674e-01	ci left: 2.491703e-03	ci right 2.941246e-03	k: 569	n:210000
SLC22A18   210000 perm   51 sec   (4112 perm/sec)   p_kst 2.709524e-03   p_cons 4.896667e-02   p_joint 3.142857e-04

Joint ci ratio: 4.651423e-01	ci left: 2.480465e-04	ci right 4.019867e-04	k: 70	n:220000
Cons ci ratio: 3.685986e-02	ci left: 4.799350e-02	ci right 4.980023e-02	k: 10756	n:220000
KS ci ratio: 1.604865e-01	ci left: 2.487467e-03	ci right 2.925799e-03	k: 594	n:220000
SLC22A18   220000 perm   54 sec   (4057 perm/sec)   p_kst 2.700000e-03   p_cons 4.889091e-02   p_joint 3.181818e-04

Joint ci ratio: 4.495796e-01	ci left: 2.564964e-04	ci right 4.087359e-04	k: 75	n:230000
Cons ci ratio: 3.606982e-02	ci left: 4.796181e-02	ci right 4.972784e-02	k: 11233	n:230000
KS ci ratio: 1.572183e-01	ci left: 2.483690e-03	ci right 2.911604e-03	k: 619	n:230000
SLC22A18   230000 perm   57 sec   (4002 perm/sec)   p_kst 2.691304e-03   p_cons 4.883913e-02   p_joint 3.260870e-04

Joint ci ratio: 4.381954e-01	ci left: 2.606127e-04	ci right 4.102232e-04	k: 79	n:240000
Cons ci ratio: 3.528575e-02	ci left: 4.804470e-02	ci right 4.977455e-02	k: 11737	n:240000
KS ci ratio: 1.531923e-01	ci left: 2.512366e-03	ci right 2.933119e-03	k: 652	n:240000
SLC22A18   240000 perm   61 sec   (3949 perm/sec)   p_kst 2.716667e-03   p_cons 4.890417e-02   p_joint 3.291667e-04

Joint ci ratio: 4.302036e-01	ci left: 2.608764e-04	ci right 4.071184e-04	k: 82	n:250000
Cons ci ratio: 3.463107e-02	ci left: 4.790711e-02	ci right 4.959937e-02	k: 12187	n:250000
KS ci ratio: 1.497893e-01	ci left: 2.527325e-03	ci right 2.940338e-03	k: 682	n:250000
SLC22A18   250000 perm   64 sec   (3898 perm/sec)   p_kst 2.728000e-03   p_cons 4.874800e-02   p_joint 3.280000e-04

Joint ci ratio: 4.226337e-01	ci left: 2.611426e-04	ci right 4.042298e-04	k: 85	n:260000
Cons ci ratio: 3.392554e-02	ci left: 4.801311e-02	ci right 4.967388e-02	k: 12698	n:260000
KS ci ratio: 1.476453e-01	ci left: 2.504178e-03	ci right 2.907034e-03	k: 702	n:260000
SLC22A18   260000 perm   68 sec   (3836 perm/sec)   p_kst 2.700000e-03   p_cons 4.883846e-02   p_joint 3.269231e-04

Joint ci ratio: 5.191609e-01	ci left: 1.566770e-04	ci right 2.693274e-04	k: 56	n:270000
Cons ci ratio: 3.328132e-02	ci left: 4.805647e-02	ci right 4.968657e-02	k: 13194	n:270000
KS ci ratio: 1.442958e-01	ci left: 2.529192e-03	ci right 2.926046e-03	k: 735	n:270000
SLC22A18   270000 perm   71 sec   (3788 perm/sec)   p_kst 2.722222e-03   p_cons 4.886667e-02   p_joint 2.074074e-04

Joint ci ratio: 5.146670e-01	ci left: 1.541865e-04	ci right 2.637425e-04	k: 57	n:280000
Cons ci ratio: 3.271518e-02	ci left: 4.797652e-02	ci right 4.957570e-02	k: 13656	n:280000
KS ci ratio: 1.416268e-01	ci left: 2.535287e-03	ci right 2.925119e-03	k: 763	n:280000
SLC22A18   280000 perm   75 sec   (3742 perm/sec)   p_kst 2.725000e-03   p_cons 4.877143e-02   p_joint 2.035714e-04

Joint ci ratio: 3.607912e-01	ci left: 3.336738e-04	ci right 4.835028e-04	k: 117	n:290000
Cons ci ratio: 3.213872e-02	ci left: 4.801180e-02	ci right 4.958344e-02	k: 14150	n:290000
KS ci ratio: 1.388371e-01	ci left: 2.551011e-03	ci right 2.934895e-03	k: 794	n:290000
SLC22A18   290000 perm   78 sec   (3696 perm/sec)   p_kst 2.737931e-03   p_cons 4.879310e-02   p_joint 4.034483e-04

Joint ci ratio: 3.548274e-01	ci left: 3.346862e-04	ci right 4.819129e-04	k: 121	n:300000
Cons ci ratio: 3.156790e-02	ci left: 4.811444e-02	ci right 4.966096e-02	k: 14665	n:300000
KS ci ratio: 1.369563e-01	ci left: 2.536780e-03	ci right 2.912929e-03	k: 816	n:300000
SLC22A18   300000 perm   82 sec   (3650 perm/sec)   p_kst 2.720000e-03   p_cons 4.888333e-02   p_joint 4.033333e-04

Joint ci ratio: 3.477719e-01	ci left: 3.385960e-04	ci right 4.839137e-04	k: 126	n:310000
Cons ci ratio: 3.105335e-02	ci left: 4.813064e-02	ci right 4.965200e-02	k: 15155	n:310000
KS ci ratio: 1.354742e-01	ci left: 2.511032e-03	ci right 2.879008e-03	k: 834	n:310000
SLC22A18   310000 perm   86 sec   (3605 perm/sec)   p_kst 2.690323e-03   p_cons 4.888710e-02   p_joint 4.064516e-04

Joint ci ratio: 3.398359e-01	ci left: 3.451464e-04	ci right 4.891536e-04	k: 132	n:320000
Cons ci ratio: 3.053342e-02	ci left: 4.823598e-02	ci right 4.973470e-02	k: 15674	n:320000
KS ci ratio: 1.338033e-01	ci left: 2.495975e-03	ci right 2.856875e-03	k: 855	n:320000
SLC22A18   320000 perm   90 sec   (3563 perm/sec)   p_kst 2.671875e-03   p_cons 4.898125e-02   p_joint 4.125000e-04

Joint ci ratio: 3.348382e-01	ci left: 3.457820e-04	ci right 4.874749e-04	k: 136	n:330000
Cons ci ratio: 3.005633e-02	ci left: 4.828098e-02	ci right 4.975726e-02	k: 16175	n:330000
KS ci ratio: 1.319667e-01	ci left: 2.490648e-03	ci right 2.845447e-03	k: 879	n:330000
SLC22A18   330000 perm   94 sec   (3522 perm/sec)   p_kst 2.663636e-03   p_cons 4.901515e-02   p_joint 4.121212e-04

Joint ci ratio: 3.312318e-01	ci left: 3.436977e-04	ci right 4.826962e-04	k: 139	n:340000
Cons ci ratio: 2.961774e-02	ci left: 4.827094e-02	ci right 4.972500e-02	k: 16658	n:340000
KS ci ratio: 1.294165e-01	ci left: 2.516972e-03	ci right 2.868060e-03	k: 914	n:340000
SLC22A18   340000 perm   98 sec   (3479 perm/sec)   p_kst 2.688235e-03   p_cons 4.899412e-02   p_joint 4.088235e-04

Joint ci ratio: 3.243534e-01	ci left: 3.496104e-04	ci right 4.874530e-04	k: 145	n:350000
Cons ci ratio: 2.917366e-02	ci left: 4.833822e-02	ci right 4.977211e-02	k: 17168	n:350000
KS ci ratio: 1.276163e-01	ci left: 2.516956e-03	ci right 2.862788e-03	k: 940	n:350000
SLC22A18   350000 perm   102 sec   (3438 perm/sec)   p_kst 2.685714e-03   p_cons 4.905143e-02   p_joint 4.142857e-04

Joint ci ratio: 2.088342e-01	ci left: 8.756985e-04	ci right 1.082470e-03	k: 351	n:360000
Cons ci ratio: 2.875837e-02	ci left: 4.837158e-02	ci right 4.978569e-02	k: 17667	n:360000
KS ci ratio: 1.255640e-01	ci left: 2.530426e-03	ci right 2.872102e-03	k: 971	n:360000
SLC22A18   360000 perm   106 sec   (3398 perm/sec)   p_kst 2.697222e-03   p_cons 4.907500e-02   p_joint 9.750000e-04

Joint ci ratio: 2.059295e-01	ci left: 8.776545e-04	ci right 1.081642e-03	k: 361	n:370000
Cons ci ratio: 2.837594e-02	ci left: 4.835226e-02	ci right 4.974671e-02	k: 18147	n:370000
KS ci ratio: 1.241676e-01	ci left: 2.519637e-03	ci right 2.855794e-03	k: 993	n:370000
SLC22A18   370000 perm   110 sec   (3359 perm/sec)   p_kst 2.683784e-03   p_cons 4.904595e-02   p_joint 9.756757e-04

Joint ci ratio: 2.025983e-01	ci left: 8.845225e-04	ci right 1.086369e-03	k: 373	n:380000
Cons ci ratio: 2.796735e-02	ci left: 4.847001e-02	ci right 4.984740e-02	k: 18679	n:380000
KS ci ratio: 1.224546e-01	ci left: 2.524743e-03	ci right 2.856597e-03	k: 1021	n:380000
SLC22A18   380000 perm   114 sec   (3321 perm/sec)   p_kst 2.686842e-03   p_cons 4.915526e-02   p_joint 9.815789e-04

Joint ci ratio: 2.193878e-01	ci left: 7.282498e-04	ci right 9.100682e-04	k: 318	n:390000
Cons ci ratio: 2.760312e-02	ci left: 4.849015e-02	ci right 4.984989e-02	k: 19175	n:390000
KS ci ratio: 1.211583e-01	ci left: 2.514696e-03	ci right 2.841480e-03	k: 1043	n:390000
SLC22A18   390000 perm   119 sec   (3284 perm/sec)   p_kst 2.674359e-03   p_cons 4.916667e-02   p_joint 8.153846e-04

Joint ci ratio: 2.214845e-01	ci left: 6.958704e-04	ci right 8.714914e-04	k: 312	n:400000
Cons ci ratio: 2.724548e-02	ci left: 4.853424e-02	ci right 4.987730e-02	k: 19681	n:400000
KS ci ratio: 1.193980e-01	ci left: 2.526998e-03	ci right 2.850273e-03	k: 1074	n:400000
SLC22A18   400000 perm   123 sec   (3247 perm/sec)   p_kst 2.685000e-03   p_cons 4.920250e-02   p_joint 7.800000e-04

Joint ci ratio: 2.166898e-01	ci left: 7.111714e-04	ci right 8.862517e-04	k: 326	n:410000
Cons ci ratio: 2.693930e-02	ci left: 4.844542e-02	ci right 4.977072e-02	k: 20133	n:410000
KS ci ratio: 1.169722e-01	ci left: 2.571879e-03	ci right 2.893749e-03	k: 1119	n:410000
SLC22A18   410000 perm   128 sec   (3211 perm/sec)   p_kst 2.729268e-03   p_cons 4.910488e-02   p_joint 7.951220e-04

Joint ci ratio: 2.301106e-01	ci left: 6.110648e-04	ci right 7.721433e-04	k: 289	n:420000
Cons ci ratio: 2.661196e-02	ci left: 4.846974e-02	ci right 4.977935e-02	k: 20631	n:420000
KS ci ratio: 1.155368e-01	ci left: 2.575372e-03	ci right 2.893454e-03	k: 1147	n:420000
SLC22A18   420000 perm   132 sec   (3175 perm/sec)   p_kst 2.730952e-03   p_cons 4.912143e-02   p_joint 6.880952e-04

Joint ci ratio: 2.266204e-01	ci left: 6.165872e-04	ci right 7.763117e-04	k: 298	n:430000
Cons ci ratio: 2.626948e-02	ci left: 4.858777e-02	ci right 4.988343e-02	k: 21170	n:430000
KS ci ratio: 1.142993e-01	ci left: 2.571948e-03	ci right 2.885975e-03	k: 1172	n:430000
SLC22A18   430000 perm   137 sec   (3140 perm/sec)   p_kst 2.725581e-03   p_cons 4.923256e-02   p_joint 6.930233e-04

Joint ci ratio: 2.222040e-01	ci left: 6.283141e-04	ci right 7.874708e-04	k: 310	n:440000
Cons ci ratio: 2.596632e-02	ci left: 4.860568e-02	ci right 4.988663e-02	k: 21667	n:440000
KS ci ratio: 1.129118e-01	ci left: 2.577531e-03	ci right 2.888166e-03	k: 1201	n:440000
SLC22A18   440000 perm   142 sec   (3106 perm/sec)   p_kst 2.729545e-03   p_cons 4.924318e-02   p_joint 7.045455e-04

Joint ci ratio: 2.225641e-01	ci left: 6.122525e-04	ci right 7.676265e-04	k: 309	n:450000
Cons ci ratio: 2.565820e-02	ci left: 4.867809e-02	ci right 4.994550e-02	k: 22189	n:450000
KS ci ratio: 1.118016e-01	ci left: 2.572087e-03	ci right 2.878816e-03	k: 1225	n:450000
SLC22A18   450000 perm   146 sec   (3073 perm/sec)   p_kst 2.722222e-03   p_cons 4.930889e-02   p_joint 6.866667e-04

Joint ci ratio: 2.214959e-01	ci left: 6.051015e-04	ci right 7.578231e-04	k: 312	n:460000
Cons ci ratio: 2.537725e-02	ci left: 4.868693e-02	ci right 4.994049e-02	k: 22683	n:460000
KS ci ratio: 1.107235e-01	ci left: 2.566893e-03	ci right 2.869859e-03	k: 1249	n:460000
SLC22A18   460000 perm   151 sec   (3040 perm/sec)   p_kst 2.715217e-03   p_cons 4.931087e-02   p_joint 6.782609e-04

Joint ci ratio: 2.207927e-01	ci left: 5.962463e-04	ci right 7.461903e-04	k: 314	n:470000
Cons ci ratio: 2.512472e-02	ci left: 4.862356e-02	ci right 4.986285e-02	k: 23143	n:470000
KS ci ratio: 1.098490e-01	ci left: 2.553657e-03	ci right 2.852526e-03	k: 1269	n:470000
SLC22A18   470000 perm   156 sec   (3007 perm/sec)   p_kst 2.700000e-03   p_cons 4.924043e-02   p_joint 6.680851e-04

Joint ci ratio: 2.018108e-01	ci left: 7.061739e-04	ci right 8.666175e-04	k: 376	n:480000
Cons ci ratio: 2.485302e-02	ci left: 4.866230e-02	ci right 4.988898e-02	k: 23651	n:480000
KS ci ratio: 1.088259e-01	ci left: 2.549088e-03	ci right 2.844466e-03	k: 1293	n:480000
SLC22A18   480000 perm   161 sec   (2976 perm/sec)   p_kst 2.693750e-03   p_cons 4.927292e-02   p_joint 7.833333e-04

Joint ci ratio: 1.994439e-01	ci left: 7.092070e-04	ci right 8.682201e-04	k: 385	n:490000
Cons ci ratio: 2.460870e-02	ci left: 4.862852e-02	ci right 4.984212e-02	k: 24124	n:490000
KS ci ratio: 1.078309e-01	ci left: 2.544718e-03	ci right 2.836722e-03	k: 1317	n:490000
SLC22A18   490000 perm   166 sec   (2944 perm/sec)   p_kst 2.687755e-03   p_cons 4.923265e-02   p_joint 7.857143e-04

Joint ci ratio: 1.984193e-01	ci left: 7.026241e-04	ci right 8.592540e-04	k: 389	n:500000
Cons ci ratio: 2.436572e-02	ci left: 4.861802e-02	ci right 4.981921e-02	k: 24608	n:500000
KS ci ratio: 1.067829e-01	ci left: 2.544428e-03	ci right 2.833383e-03	k: 1343	n:500000
SLC22A18   500000 perm   172 sec   (2915 perm/sec)   p_kst 2.686000e-03   p_cons 4.921600e-02   p_joint 7.780000e-04

Joint ci ratio: 1.966624e-01	ci left: 7.018938e-04	ci right 8.568094e-04	k: 396	n:510000
Cons ci ratio: 2.412827e-02	ci left: 4.861384e-02	ci right 4.980306e-02	k: 25095	n:510000
KS ci ratio: 1.056489e-01	ci left: 2.549890e-03	ci right 2.836198e-03	k: 1372	n:510000
SLC22A18   510000 perm   177 sec   (2885 perm/sec)   p_kst 2.690196e-03   p_cons 4.920588e-02   p_joint 7.764706e-04

Joint ci ratio: 1.959244e-01	ci left: 6.938812e-04	ci right 8.463851e-04	k: 399	n:520000
Cons ci ratio: 2.392913e-02	ci left: 4.848749e-02	ci right 4.966370e-02	k: 25518	n:520000
KS ci ratio: 1.045877e-01	ci left: 2.553284e-03	ci right 2.836917e-03	k: 1400	n:520000
SLC22A18   520000 perm   182 sec   (2857 perm/sec)   p_kst 2.692308e-03   p_cons 4.907308e-02   p_joint 7.673077e-04

Joint ci ratio: 1.947117e-01	ci left: 6.897616e-04	ci right 8.403105e-04	k: 404	n:530000
Cons ci ratio: 2.372426e-02	ci left: 4.840723e-02	ci right 4.957130e-02	k: 25963	n:530000
KS ci ratio: 1.040703e-01	ci left: 2.530833e-03	ci right 2.810496e-03	k: 1414	n:530000
SLC22A18   530000 perm   187 sec   (2831 perm/sec)   p_kst 2.667925e-03   p_cons 4.898679e-02   p_joint 7.622642e-04

Joint ci ratio: 1.939954e-01	ci left: 6.822732e-04	ci right 8.305751e-04	k: 407	n:540000
Cons ci ratio: 2.349045e-02	ci left: 4.846441e-02	ci right 4.961821e-02	k: 26481	n:540000
KS ci ratio: 1.031991e-01	ci left: 2.527258e-03	ci right 2.804047e-03	k: 1438	n:540000
SLC22A18   540000 perm   193 sec   (2802 perm/sec)   p_kst 2.662963e-03   p_cons 4.903889e-02   p_joint 7.537037e-04

Joint ci ratio: 2.029009e-01	ci left: 6.093898e-04	ci right 7.486843e-04	k: 372	n:550000
Cons ci ratio: 2.326522e-02	ci left: 4.851233e-02	ci right 4.965606e-02	k: 26995	n:550000
KS ci ratio: 1.024899e-01	ci left: 2.516736e-03	ci right 2.790363e-03	k: 1458	n:550000
SLC22A18   550000 perm   198 sec   (2777 perm/sec)   p_kst 2.650909e-03   p_cons 4.908182e-02   p_joint 6.763636e-04

Joint ci ratio: 2.012885e-01	ci left: 6.086799e-04	ci right 7.465707e-04	k: 378	n:560000
Cons ci ratio: 2.306046e-02	ci left: 4.850177e-02	ci right 4.963505e-02	k: 27477	n:560000
KS ci ratio: 1.015888e-01	ci left: 2.517038e-03	ci right 2.788148e-03	k: 1484	n:560000
SLC22A18   560000 perm   204 sec   (2751 perm/sec)   p_kst 2.650000e-03   p_cons 4.906607e-02   p_joint 6.750000e-04

Joint ci ratio: 1.994550e-01	ci left: 6.096660e-04	ci right 7.463690e-04	k: 385	n:570000
Cons ci ratio: 2.286531e-02	ci left: 4.847417e-02	ci right 4.959709e-02	k: 27949	n:570000
KS ci ratio: 1.004116e-01	ci left: 2.532732e-03	ci right 2.802186e-03	k: 1519	n:570000
SLC22A18   570000 perm   209 sec   (2725 perm/sec)   p_kst 2.664912e-03   p_cons 4.903333e-02   p_joint 6.754386e-04

Joint ci ratio: 2.103735e-01	ci left: 5.353586e-04	ci right 6.628191e-04	k: 346	n:580000
Cons ci ratio: 2.267210e-02	ci left: 4.845956e-02	ci right 4.957254e-02	k: 28428	n:580000
KS ci ratio: 9.969317e-02	ci left: 2.526046e-03	ci right 2.792753e-03	k: 1541	n:580000
SLC22A18   580000 perm   215 sec   (2700 perm/sec)   p_kst 2.656897e-03   p_cons 4.901379e-02   p_joint 5.965517e-04

Joint ci ratio: 2.194183e-01	ci left: 4.813786e-04	ci right 6.015801e-04	k: 318	n:590000
Cons ci ratio: 2.248247e-02	ci left: 4.845055e-02	ci right 4.955389e-02	k: 28910	n:590000
KS ci ratio: 9.895820e-02	ci left: 2.521246e-03	ci right 2.785370e-03	k: 1564	n:590000
SLC22A18   590000 perm   221 sec   (2675 perm/sec)   p_kst 2.650847e-03   p_cons 4.900000e-02   p_joint 5.389831e-04

Joint ci ratio: 2.233052e-01	ci left: 4.560380e-04	ci right 5.722066e-04	k: 307	n:600000
Cons ci ratio: 2.230032e-02	ci left: 4.843027e-02	ci right 4.952409e-02	k: 29385	n:600000
KS ci ratio: 9.802285e-02	ci left: 2.527994e-03	ci right 2.790178e-03	k: 1594	n:600000
SLC22A18   600000 perm   226 sec   (2651 perm/sec)   p_kst 2.656667e-03   p_cons 4.897500e-02   p_joint 5.116667e-04

Joint ci ratio: 2.218694e-01	ci left: 4.547537e-04	ci right 5.697486e-04	k: 311	n:610000
Cons ci ratio: 2.210929e-02	ci left: 4.846613e-02	ci right 4.955127e-02	k: 29894	n:610000
KS ci ratio: 9.729381e-02	ci left: 2.524935e-03	ci right 2.784743e-03	k: 1618	n:610000
SLC22A18   610000 perm   232 sec   (2627 perm/sec)   p_kst 2.652459e-03   p_cons 4.900656e-02   p_joint 5.098361e-04

Joint ci ratio: 2.208107e-01	ci left: 4.519893e-04	ci right 5.656658e-04	k: 314	n:620000
Cons ci ratio: 2.192802e-02	ci left: 4.848002e-02	ci right 4.955646e-02	k: 30390	n:620000
KS ci ratio: 9.669888e-02	ci left: 2.515685e-03	ci right 2.772868e-03	k: 1638	n:620000
SLC22A18   620000 perm   238 sec   (2604 perm/sec)   p_kst 2.641935e-03   p_cons 4.901613e-02   p_joint 5.064516e-04

Joint ci ratio: 2.190788e-01	ci left: 4.523142e-04	ci right 5.650600e-04	k: 319	n:630000
Cons ci ratio: 2.175225e-02	ci left: 4.848876e-02	ci right 4.955666e-02	k: 30883	n:630000
KS ci ratio: 9.594094e-02	ci left: 2.516029e-03	ci right 2.771118e-03	k: 1664	n:630000
SLC22A18   630000 perm   244 sec   (2581 perm/sec)   p_kst 2.641270e-03   p_cons 4.902063e-02   p_joint 5.063492e-04

Joint ci ratio: 2.163902e-01	ci left: 4.570653e-04	ci right 5.694113e-04	k: 327	n:640000
Cons ci ratio: 2.158389e-02	ci left: 4.848328e-02	ci right 4.954269e-02	k: 31367	n:640000
KS ci ratio: 9.528533e-02	ci left: 2.511794e-03	ci right 2.764616e-03	k: 1687	n:640000
SLC22A18   640000 perm   250 sec   (2559 perm/sec)   p_kst 2.635937e-03   p_cons 4.901094e-02   p_joint 5.109375e-04

Joint ci ratio: 2.147595e-01	ci left: 4.573105e-04	ci right 5.687581e-04	k: 332	n:650000
Cons ci ratio: 2.141903e-02	ci left: 4.847952e-02	ci right 4.953066e-02	k: 31852	n:650000
KS ci ratio: 9.472627e-02	ci left: 2.503189e-03	ci right 2.753585e-03	k: 1707	n:650000
SLC22A18   650000 perm   256 sec   (2537 perm/sec)   p_kst 2.626154e-03   p_cons 4.900308e-02   p_joint 5.107692e-04

Joint ci ratio: 2.128503e-01	ci left: 4.589858e-04	ci right 5.697175e-04	k: 338	n:660000
Cons ci ratio: 2.124787e-02	ci left: 4.851963e-02	ci right 4.956312e-02	k: 32366	n:660000
KS ci ratio: 9.406785e-02	ci left: 2.500767e-03	ci right 2.749086e-03	k: 1731	n:660000
SLC22A18   660000 perm   262 sec   (2515 perm/sec)   p_kst 2.622727e-03   p_cons 4.903939e-02   p_joint 5.121212e-04

Joint ci ratio: 1.837099e-01	ci left: 6.167252e-04	ci right 7.428808e-04	k: 454	n:670000
Cons ci ratio: 2.108750e-02	ci left: 4.852887e-02	ci right 4.956459e-02	k: 32860	n:670000
KS ci ratio: 9.336966e-02	ci left: 2.501338e-03	ci right 2.747770e-03	k: 1757	n:670000
SLC22A18   670000 perm   269 sec   (2494 perm/sec)   p_kst 2.622388e-03   p_cons 4.904478e-02   p_joint 6.776119e-04

Joint ci ratio: 1.903125e-01	ci left: 5.641995e-04	ci right 6.842387e-04	k: 423	n:680000
Cons ci ratio: 2.092609e-02	ci left: 4.855835e-02	ci right 4.958667e-02	k: 33368	n:680000
KS ci ratio: 9.273893e-02	ci left: 2.499026e-03	ci right 2.743477e-03	k: 1781	n:680000
SLC22A18   680000 perm   275 sec   (2473 perm/sec)   p_kst 2.619118e-03   p_cons 4.907059e-02   p_joint 6.220588e-04

Joint ci ratio: 1.716733e-01	ci left: 6.902540e-04	ci right 8.212425e-04	k: 520	n:690000
Cons ci ratio: 2.077542e-02	ci left: 4.855528e-02	ci right 4.957605e-02	k: 33854	n:690000
KS ci ratio: 9.179018e-02	ci left: 2.515195e-03	ci right 2.758575e-03	k: 1818	n:690000
SLC22A18   690000 perm   281 sec   (2452 perm/sec)   p_kst 2.634783e-03   p_cons 4.906377e-02   p_joint 7.536232e-04

Joint ci ratio: 1.781201e-01	ci left: 6.298473e-04	ci right 7.543449e-04	k: 483	n:700000
Cons ci ratio: 2.062133e-02	ci left: 4.858218e-02	ci right 4.959585e-02	k: 34361	n:700000
KS ci ratio: 9.126522e-02	ci left: 2.508577e-03	ci right 2.749854e-03	k: 1839	n:700000
SLC22A18   700000 perm   288 sec   (2432 perm/sec)   p_kst 2.627143e-03   p_cons 4.908714e-02   p_joint 6.900000e-04

Joint ci ratio: 1.773889e-01	ci left: 6.263593e-04	ci right 7.496046e-04	k: 487	n:710000
Cons ci ratio: 2.047216e-02	ci left: 4.860133e-02	ci right 4.960798e-02	k: 34863	n:710000
KS ci ratio: 9.067592e-02	ci left: 2.506279e-03	ci right 2.745696e-03	k: 1863	n:710000
SLC22A18   710000 perm   294 sec   (2411 perm/sec)   p_kst 2.623944e-03   p_cons 4.910282e-02   p_joint 6.859155e-04

Joint ci ratio: 1.781218e-01	ci left: 6.123511e-04	ci right 7.333915e-04	k: 483	n:720000
Cons ci ratio: 2.033556e-02	ci left: 4.857714e-02	ci right 4.957649e-02	k: 35334	n:720000
KS ci ratio: 9.002620e-02	ci left: 2.508122e-03	ci right 2.745908e-03	k: 1890	n:720000
SLC22A18   720000 perm   301 sec   (2392 perm/sec)   p_kst 2.625000e-03   p_cons 4.907500e-02   p_joint 6.708333e-04

Joint ci ratio: 1.900924e-01	ci left: 5.268594e-04	ci right 6.388093e-04	k: 424	n:730000
Cons ci ratio: 2.019098e-02	ci left: 4.860271e-02	ci right 4.959540e-02	k: 35841	n:730000
KS ci ratio: 8.939026e-02	ci left: 2.509921e-03	ci right 2.746108e-03	k: 1917	n:730000
SLC22A18   730000 perm   308 sec   (2372 perm/sec)   p_kst 2.626027e-03   p_cons 4.909726e-02   p_joint 5.808219e-04

Joint ci ratio: 1.881107e-01	ci left: 5.313262e-04	ci right 6.429139e-04	k: 433	n:740000
Cons ci ratio: 2.005322e-02	ci left: 4.861012e-02	ci right 4.959611e-02	k: 36335	n:740000
KS ci ratio: 8.885926e-02	ci left: 2.506391e-03	ci right 2.740773e-03	k: 1940	n:740000
SLC22A18   740000 perm   314 sec   (2354 perm/sec)   p_kst 2.621622e-03   p_cons 4.910135e-02   p_joint 5.851351e-04

Joint ci ratio: 1.876793e-01	ci left: 5.267829e-04	ci right 6.371338e-04	k: 435	n:750000
Cons ci ratio: 1.992392e-02	ci left: 4.859082e-02	ci right 4.957000e-02	k: 36809	n:750000
KS ci ratio: 8.836017e-02	ci left: 2.501656e-03	ci right 2.734213e-03	k: 1962	n:750000
SLC22A18   750000 perm   321 sec   (2335 perm/sec)   p_kst 2.616000e-03   p_cons 4.907867e-02   p_joint 5.800000e-04

Joint ci ratio: 1.641290e-01	ci left: 6.884437e-04	ci right 8.127810e-04	k: 569	n:760000
Cons ci ratio: 1.979989e-02	ci left: 4.855896e-02	ci right 4.953133e-02	k: 37273	n:760000
KS ci ratio: 8.762630e-02	ci left: 2.511205e-03	ci right 2.742612e-03	k: 1995	n:760000
SLC22A18   760000 perm   328 sec   (2316 perm/sec)   p_kst 2.625000e-03   p_cons 4.904342e-02   p_joint 7.486842e-04

Joint ci ratio: 1.638424e-01	ci left: 6.819935e-04	ci right 8.049295e-04	k: 571	n:770000
Cons ci ratio: 1.965926e-02	ci left: 4.861713e-02	ci right 4.958367e-02	k: 37806	n:770000
KS ci ratio: 8.706112e-02	ci left: 2.511621e-03	ci right 2.741497e-03	k: 2021	n:770000
SLC22A18   770000 perm   335 sec   (2298 perm/sec)   p_kst 2.624675e-03   p_cons 4.909870e-02   p_joint 7.415584e-04

Joint ci ratio: 1.641306e-01	ci left: 6.707908e-04	ci right 7.919411e-04	k: 569	n:780000
Cons ci ratio: 1.952881e-02	ci left: 4.863938e-02	ci right 4.959987e-02	k: 38312	n:780000
KS ci ratio: 8.659156e-02	ci left: 2.507013e-03	ci right 2.735167e-03	k: 2043	n:780000
SLC22A18   780000 perm   342 sec   (2281 perm/sec)   p_kst 2.619231e-03   p_cons 4.911795e-02   p_joint 7.294872e-04

Joint ci ratio: 1.632737e-01	ci left: 6.695835e-04	ci right 7.898224e-04	k: 575	n:790000
Cons ci ratio: 1.940934e-02	ci left: 4.862076e-02	ci right 4.957495e-02	k: 38786	n:790000
KS ci ratio: 8.608775e-02	ci left: 2.505002e-03	ci right 2.731581e-03	k: 2067	n:790000
SLC22A18   790000 perm   349 sec   (2263 perm/sec)   p_kst 2.616456e-03   p_cons 4.909620e-02   p_joint 7.278481e-04

Joint ci ratio: 1.691036e-01	ci left: 6.144892e-04	ci right 7.291764e-04	k: 536	n:800000
Cons ci ratio: 1.928661e-02	ci left: 4.862876e-02	ci right 4.957701e-02	k: 39281	n:800000
KS ci ratio: 8.565423e-02	ci left: 2.499376e-03	ci right 2.724250e-03	k: 2088	n:800000
SLC22A18   800000 perm   356 sec   (2246 perm/sec)   p_kst 2.610000e-03   p_cons 4.910125e-02   p_joint 6.700000e-04

Joint ci ratio: 1.677039e-01	ci left: 6.175458e-04	ci right 7.317531e-04	k: 545	n:810000
Cons ci ratio: 1.917074e-02	ci left: 4.861446e-02	ci right 4.955667e-02	k: 39758	n:810000
KS ci ratio: 8.500532e-02	ci left: 2.507183e-03	ci right 2.730966e-03	k: 2120	n:810000
SLC22A18   810000 perm   363 sec   (2228 perm/sec)   p_kst 2.617284e-03   p_cons 4.908395e-02   p_joint 6.728395e-04

Joint ci ratio: 1.664885e-01	ci left: 6.193629e-04	ci right 7.329929e-04	k: 553	n:820000
Cons ci ratio: 1.904847e-02	ci left: 4.864180e-02	ci right 4.957846e-02	k: 40269	n:820000
KS ci ratio: 8.460768e-02	ci left: 2.500480e-03	ci right 2.722569e-03	k: 2140	n:820000
SLC22A18   820000 perm   371 sec   (2211 perm/sec)   p_kst 2.609756e-03   p_cons 4.910854e-02   p_joint 6.743902e-04

Joint ci ratio: 1.694216e-01	ci left: 5.899705e-04	ci right 7.003098e-04	k: 534	n:830000
Cons ci ratio: 1.892998e-02	ci left: 4.866130e-02	ci right 4.959245e-02	k: 40774	n:830000
KS ci ratio: 8.415701e-02	ci left: 2.497480e-03	ci right 2.718063e-03	k: 2163	n:830000
SLC22A18   830000 perm   378 sec   (2194 perm/sec)   p_kst 2.606024e-03   p_cons 4.912530e-02   p_joint 6.433735e-04

Joint ci ratio: 1.686356e-01	ci left: 5.886476e-04	ci right 6.981768e-04	k: 539	n:840000
Cons ci ratio: 1.881056e-02	ci left: 4.869577e-02	ci right 4.962163e-02	k: 41292	n:840000
KS ci ratio: 8.373266e-02	ci left: 2.493388e-03	ci right 2.712445e-03	k: 2185	n:840000
SLC22A18   840000 perm   386 sec   (2177 perm/sec)   p_kst 2.601190e-03   p_cons 4.915714e-02   p_joint 6.416667e-04

Joint ci ratio: 1.675531e-01	ci left: 5.896112e-04	ci right 6.985443e-04	k: 546	n:850000
Cons ci ratio: 1.869431e-02	ci left: 4.872475e-02	ci right 4.964538e-02	k: 41806	n:850000
KS ci ratio: 8.329576e-02	ci left: 2.490548e-03	ci right 2.708158e-03	k: 2208	n:850000
SLC22A18   850000 perm   393 sec   (2160 perm/sec)   p_kst 2.597647e-03   p_cons 4.918353e-02   p_joint 6.423529e-04

Joint ci ratio: 1.809593e-01	ci left: 4.960052e-04	ci right 5.957810e-04	k: 468	n:860000
Cons ci ratio: 1.858227e-02	ci left: 4.874266e-02	ci right 4.965805e-02	k: 42311	n:860000
KS ci ratio: 8.277272e-02	ci left: 2.493470e-03	ci right 2.709902e-03	k: 2236	n:860000
SLC22A18   860000 perm   401 sec   (2144 perm/sec)   p_kst 2.600000e-03   p_cons 4.919884e-02   p_joint 5.441860e-04

Joint ci ratio: 1.801927e-01	ci left: 4.946939e-04	ci right 5.937382e-04	k: 472	n:870000
Cons ci ratio: 1.846813e-02	ci left: 4.878078e-02	ci right 4.969119e-02	k: 42834	n:870000
KS ci ratio: 8.222303e-02	ci left: 2.498581e-03	ci right 2.713947e-03	k: 2266	n:870000
SLC22A18   870000 perm   409 sec   (2129 perm/sec)   p_kst 2.604598e-03   p_cons 4.923448e-02   p_joint 5.425287e-04

Joint ci ratio: 1.831218e-01	ci left: 4.728014e-04	ci right 5.691722e-04	k: 457	n:880000
Cons ci ratio: 1.836521e-02	ci left: 4.877165e-02	ci right 4.967677e-02	k: 43316	n:880000
KS ci ratio: 8.182714e-02	ci left: 2.494675e-03	ci right 2.708620e-03	k: 2288	n:880000
SLC22A18   880000 perm   416 sec   (2114 perm/sec)   p_kst 2.600000e-03   p_cons 4.922273e-02   p_joint 5.193182e-04

Joint ci ratio: 1.855708e-01	ci left: 4.546277e-04	ci right 5.486729e-04	k: 445	n:890000
Cons ci ratio: 1.826420e-02	ci left: 4.876163e-02	ci right 4.966153e-02	k: 43797	n:890000
KS ci ratio: 8.136634e-02	ci left: 2.495263e-03	ci right 2.707995e-03	k: 2314	n:890000
SLC22A18   890000 perm   424 sec   (2099 perm/sec)   p_kst 2.600000e-03   p_cons 4.921011e-02   p_joint 5.000000e-04

Joint ci ratio: 1.847443e-01	ci left: 4.538147e-04	ci right 5.472268e-04	k: 449	n:900000
Cons ci ratio: 1.816269e-02	ci left: 4.876290e-02	ci right 4.965778e-02	k: 44288	n:900000
KS ci ratio: 8.089591e-02	ci left: 2.496929e-03	ci right 2.708515e-03	k: 2341	n:900000
SLC22A18   900000 perm   432 sec   (2083 perm/sec)   p_kst 2.601111e-03   p_cons 4.920889e-02   p_joint 4.988889e-04

Joint ci ratio: 1.720197e-01	ci left: 5.212722e-04	ci right 6.204133e-04	k: 518	n:910000
Cons ci ratio: 1.806285e-02	ci left: 4.876417e-02	ci right 4.965409e-02	k: 44779	n:910000
KS ci ratio: 8.055296e-02	ci left: 2.491024e-03	ci right 2.701173e-03	k: 2361	n:910000
SLC22A18   910000 perm   440 sec   (2069 perm/sec)   p_kst 2.594505e-03   p_cons 4.920769e-02   p_joint 5.692308e-04

Joint ci ratio: 1.694270e-01	ci left: 5.322547e-04	ci right 6.318030e-04	k: 534	n:920000
Cons ci ratio: 1.796569e-02	ci left: 4.876000e-02	ci right 4.964501e-02	k: 45265	n:920000
KS ci ratio: 8.014690e-02	ci left: 2.489511e-03	ci right 2.698423e-03	k: 2385	n:920000
SLC22A18   920000 perm   448 sec   (2053 perm/sec)   p_kst 2.592391e-03   p_cons 4.920109e-02   p_joint 5.804348e-04

Joint ci ratio: 1.684848e-01	ci left: 5.327103e-04	ci right 6.317336e-04	k: 540	n:930000
Cons ci ratio: 1.787131e-02	ci left: 4.874951e-02	ci right 4.962964e-02	k: 45745	n:930000
KS ci ratio: 7.968064e-02	ci left: 2.492248e-03	ci right 2.700117e-03	k: 2413	n:930000
SLC22A18   930000 perm   456 sec   (2038 perm/sec)   p_kst 2.594624e-03   p_cons 4.918817e-02   p_joint 5.806452e-04

Joint ci ratio: 1.677117e-01	ci left: 5.321385e-04	ci right 6.305557e-04	k: 545	n:940000
Cons ci ratio: 1.777981e-02	ci left: 4.873185e-02	ci right 4.960711e-02	k: 46218	n:940000
KS ci ratio: 7.932019e-02	ci left: 2.488673e-03	ci right 2.695262e-03	k: 2435	n:940000
SLC22A18   940000 perm   464 sec   (2024 perm/sec)   p_kst 2.590426e-03   p_cons 4.916809e-02   p_joint 5.797872e-04

Joint ci ratio: 1.671009e-01	ci left: 5.305712e-04	ci right 6.283051e-04	k: 549	n:950000
Cons ci ratio: 1.767976e-02	ci left: 4.876697e-02	ci right 4.963788e-02	k: 46741	n:950000
KS ci ratio: 7.904523e-02	ci left: 2.480017e-03	ci right 2.685140e-03	k: 2452	n:950000
SLC22A18   950000 perm   473 sec   (2010 perm/sec)   p_kst 2.581053e-03   p_cons 4.920105e-02   p_joint 5.778947e-04

Joint ci ratio: 1.671014e-01	ci left: 5.250443e-04	ci right 6.217605e-04	k: 549	n:960000
Cons ci ratio: 1.759959e-02	ci left: 4.870491e-02	ci right 4.957073e-02	k: 47171	n:960000
KS ci ratio: 7.877310e-02	ci left: 2.471542e-03	ci right 2.675228e-03	k: 2469	n:960000
SLC22A18   960000 perm   481 sec   (1997 perm/sec)   p_kst 2.571875e-03   p_cons 4.913646e-02   p_joint 5.718750e-04

Joint ci ratio: 1.667987e-01	ci left: 5.216071e-04	ci right 6.174986e-04	k: 551	n:970000
Cons ci ratio: 1.751025e-02	ci left: 4.869855e-02	ci right 4.955982e-02	k: 47654	n:970000
KS ci ratio: 7.845634e-02	ci left: 2.466275e-03	ci right 2.668673e-03	k: 2489	n:970000
SLC22A18   970000 perm   489 sec   (1984 perm/sec)   p_kst 2.565979e-03   p_cons 4.912784e-02   p_joint 5.680412e-04

Joint ci ratio: 1.654551e-01	ci left: 5.250865e-04	ci right 6.207626e-04	k: 560	n:980000
Cons ci ratio: 1.742303e-02	ci left: 4.868826e-02	ci right 4.954502e-02	k: 48133	n:980000
KS ci ratio: 7.794127e-02	ci left: 2.474124e-03	ci right 2.675773e-03	k: 2522	n:980000
SLC22A18   980000 perm   497 sec   (1970 perm/sec)   p_kst 2.573469e-03   p_cons 4.911531e-02   p_joint 5.714286e-04

Joint ci ratio: 1.650147e-01	ci left: 5.226875e-04	ci right 6.176479e-04	k: 563	n:990000
Cons ci ratio: 1.733915e-02	ci left: 4.866713e-02	ci right 4.951935e-02	k: 48601	n:990000
KS ci ratio: 7.742102e-02	ci left: 2.482810e-03	ci right 2.683755e-03	k: 2556	n:990000
SLC22A18   990000 perm   506 sec   (1957 perm/sec)   p_kst 2.581818e-03   p_cons 4.909192e-02   p_joint 5.686869e-04

Joint ci ratio: 1.641438e-01	ci left: 5.232135e-04	ci right 6.177183e-04	k: 569	n:1000000
Cons ci ratio: 1.725112e-02	ci left: 4.867531e-02	ci right 4.952330e-02	k: 49098	n:1000000
KS ci ratio: 7.697065e-02	ci left: 2.487403e-03	ci right 2.687496e-03	k: 2586	n:1000000
SLC22A18   1000000 perm   514 sec   (1944 perm/sec)   p_kst 2.586000e-03   p_cons 4.909800e-02   p_joint 5.690000e-04

Joint ci ratio: 1.634287e-01	ci left: 5.227808e-04	ci right 6.167555e-04	k: 574	n:1010000
Cons ci ratio: 1.715986e-02	ci left: 4.870799e-02	ci right 4.955202e-02	k: 49620	n:1010000
KS ci ratio: 7.667506e-02	ci left: 2.482196e-03	ci right 2.681070e-03	k: 2606	n:1010000
SLC22A18   1010000 perm   523 sec   (1931 perm/sec)   p_kst 2.580198e-03   p_cons 4.912871e-02   p_joint 5.683168e-04

Joint ci ratio: 1.623033e-01	ci left: 5.251790e-04	ci right 6.188713e-04	k: 582	n:1020000
Cons ci ratio: 1.707631e-02	ci left: 4.870587e-02	ci right 4.954571e-02	k: 50107	n:1020000
KS ci ratio: 7.638285e-02	ci left: 2.477093e-03	ci right 2.674768e-03	k: 2626	n:1020000
SLC22A18   1020000 perm   532 sec   (1919 perm/sec)   p_kst 2.574510e-03   p_cons 4.912451e-02   p_joint 5.705882e-04

Joint ci ratio: 1.610646e-01	ci left: 5.284646e-04	ci right 6.219539e-04	k: 591	n:1030000
Cons ci ratio: 1.698919e-02	ci left: 4.872991e-02	ci right 4.956583e-02	k: 50621	n:1030000
KS ci ratio: 7.593592e-02	ci left: 2.482568e-03	ci right 2.679469e-03	k: 2657	n:1030000
SLC22A18   1030000 perm   540 sec   (1907 perm/sec)   p_kst 2.579612e-03   p_cons 4.914660e-02   p_joint 5.737864e-04

Joint ci ratio: 1.603888e-01	ci left: 5.279975e-04	ci right 6.209745e-04	k: 596	n:1040000
Cons ci ratio: 1.691558e-02	ci left: 4.868645e-02	ci right 4.951798e-02	k: 51065	n:1040000
KS ci ratio: 7.556722e-02	ci left: 2.483224e-03	ci right 2.679178e-03	k: 2683	n:1040000
SLC22A18   1040000 perm   549 sec   (1895 perm/sec)   p_kst 2.579808e-03   p_cons 4.910096e-02   p_joint 5.730769e-04

Joint ci ratio: 1.599875e-01	ci left: 5.257115e-04	ci right 6.180321e-04	k: 599	n:1050000
Cons ci ratio: 1.683811e-02	ci left: 4.867040e-02	ci right 4.949781e-02	k: 51537	n:1050000
KS ci ratio: 7.527350e-02	ci left: 2.479196e-03	ci right 2.674040e-03	k: 2704	n:1050000
SLC22A18   1050000 perm   558 sec   (1883 perm/sec)   p_kst 2.575238e-03   p_cons 4.908286e-02   p_joint 5.704762e-04

Joint ci ratio: 1.586704e-01	ci left: 5.298099e-04	ci right 6.220113e-04	k: 609	n:1060000
Cons ci ratio: 1.675220e-02	ci left: 4.870727e-02	ci right 4.953104e-02	k: 52065	n:1060000
KS ci ratio: 7.490057e-02	ci left: 2.480801e-03	ci right 2.674763e-03	k: 2731	n:1060000
SLC22A18   1060000 perm   566 sec   (1872 perm/sec)   p_kst 2.576415e-03   p_cons 4.911792e-02   p_joint 5.745283e-04

Joint ci ratio: 1.578958e-01	ci left: 5.302438e-04	ci right 6.220275e-04	k: 615	n:1070000
Cons ci ratio: 1.667043e-02	ci left: 4.872764e-02	ci right 4.954770e-02	k: 52576	n:1070000
KS ci ratio: 7.443852e-02	ci left: 2.488799e-03	ci right 2.682134e-03	k: 2765	n:1070000
SLC22A18   1070000 perm   575 sec   (1859 perm/sec)   p_kst 2.584112e-03   p_cons 4.913645e-02   p_joint 5.747664e-04

Joint ci ratio: 1.572589e-01	ci left: 5.297812e-04	ci right 6.210800e-04	k: 620	n:1080000
Cons ci ratio: 1.659626e-02	ci left: 4.871168e-02	ci right 4.952778e-02	k: 53048	n:1080000
KS ci ratio: 7.418440e-02	ci left: 2.483020e-03	ci right 2.675219e-03	k: 2784	n:1080000
SLC22A18   1080000 perm   584 sec   (1848 perm/sec)   p_kst 2.577778e-03   p_cons 4.911852e-02   p_joint 5.740741e-04

Joint ci ratio: 1.566296e-01	ci left: 5.293278e-04	ci right 6.201492e-04	k: 625	n:1090000
Cons ci ratio: 1.651626e-02	ci left: 4.873439e-02	ci right 4.954690e-02	k: 53562	n:1090000
KS ci ratio: 7.389324e-02	ci left: 2.480050e-03	ci right 2.671233e-03	k: 2806	n:1090000
SLC22A18   1090000 perm   593 sec   (1837 perm/sec)   p_kst 2.574312e-03   p_cons 4.913945e-02   p_joint 5.733945e-04

Joint ci ratio: 1.557611e-01	ci left: 5.306306e-04	ci right 6.211236e-04	k: 632	n:1100000
Cons ci ratio: 1.644412e-02	ci left: 4.871867e-02	ci right 4.952734e-02	k: 54034	n:1100000
KS ci ratio: 7.354036e-02	ci left: 2.481597e-03	ci right 2.671946e-03	k: 2833	n:1100000
SLC22A18   1100000 perm   603 sec   (1825 perm/sec)   p_kst 2.575455e-03   p_cons 4.912182e-02   p_joint 5.745455e-04

Joint ci ratio: 1.550281e-01	ci left: 5.310454e-04	ci right 6.211433e-04	k: 638	n:1110000
Cons ci ratio: 1.636991e-02	ci left: 4.872029e-02	ci right 4.952531e-02	k: 54525	n:1110000
KS ci ratio: 7.320532e-02	ci left: 2.482234e-03	ci right 2.671728e-03	k: 2859	n:1110000
SLC22A18   1110000 perm   612 sec   (1814 perm/sec)   p_kst 2.575676e-03   p_cons 4.912162e-02   p_joint 5.747748e-04

Joint ci ratio: 1.541858e-01	ci left: 5.323122e-04	ci right 6.220890e-04	k: 645	n:1120000
Cons ci ratio: 1.629998e-02	ci left: 4.870322e-02	ci right 4.950448e-02	k: 54995	n:1120000
KS ci ratio: 7.283687e-02	ci left: 2.485491e-03	ci right 2.674239e-03	k: 2888	n:1120000
SLC22A18   1120000 perm   622 sec   (1802 perm/sec)   p_kst 2.578571e-03   p_cons 4.910268e-02   p_joint 5.758929e-04

Joint ci ratio: 1.555167e-01	ci left: 5.182438e-04	ci right 6.064727e-04	k: 634	n:1130000
Cons ci ratio: 1.622462e-02	ci left: 4.872259e-02	ci right 4.952043e-02	k: 55506	n:1130000
KS ci ratio: 7.252378e-02	ci left: 2.485218e-03	ci right 2.673099e-03	k: 2913	n:1130000
SLC22A18   1130000 perm   631 sec   (1791 perm/sec)   p_kst 2.577876e-03   p_cons 4.912035e-02   p_joint 5.610619e-04

Joint ci ratio: 1.545460e-01	ci left: 5.204432e-04	ci right 6.084423e-04	k: 642	n:1140000
Cons ci ratio: 1.615212e-02	ci left: 4.873115e-02	ci right 4.952553e-02	k: 56005	n:1140000
KS ci ratio: 7.207958e-02	ci left: 2.494426e-03	ci right 2.681800e-03	k: 2949	n:1140000
SLC22A18   1140000 perm   641 sec   (1779 perm/sec)   p_kst 2.586842e-03   p_cons 4.912719e-02   p_joint 5.631579e-04

Joint ci ratio: 1.660554e-01	ci left: 4.441295e-04	ci right 5.253773e-04	k: 556	n:1150000
Cons ci ratio: 1.608194e-02	ci left: 4.873177e-02	ci right 4.952268e-02	k: 56495	n:1150000
KS ci ratio: 7.177611e-02	ci left: 2.494083e-03	ci right 2.680610e-03	k: 2974	n:1150000
SLC22A18   1150000 perm   650 sec   (1768 perm/sec)   p_kst 2.586087e-03   p_cons 4.912609e-02   p_joint 4.834783e-04

Joint ci ratio: 1.657583e-01	ci left: 4.419533e-04	ci right 5.226439e-04	k: 558	n:1160000
Cons ci ratio: 1.601428e-02	ci left: 4.872294e-02	ci right 4.951035e-02	k: 56974	n:1160000
KS ci ratio: 7.148839e-02	ci left: 2.492902e-03	ci right 2.678561e-03	k: 2998	n:1160000
SLC22A18   1160000 perm   660 sec   (1758 perm/sec)   p_kst 2.584483e-03   p_cons 4.911552e-02   p_joint 4.810345e-04

Joint ci ratio: 1.653154e-01	ci left: 4.406337e-04	ci right 5.208471e-04	k: 561	n:1170000
Cons ci ratio: 1.595171e-02	ci left: 4.868958e-02	ci right 4.947334e-02	k: 57424	n:1170000
KS ci ratio: 7.116871e-02	ci left: 2.494260e-03	ci right 2.679156e-03	k: 3025	n:1170000
SLC22A18   1170000 perm   670 sec   (1747 perm/sec)   p_kst 2.585470e-03   p_cons 4.908034e-02   p_joint 4.794872e-04

Joint ci ratio: 1.644399e-01	ci left: 4.417745e-04	ci right 5.217275e-04	k: 567	n:1180000
Cons ci ratio: 1.588914e-02	ci left: 4.866101e-02	ci right 4.944121e-02	k: 57879	n:1180000
KS ci ratio: 7.083002e-02	ci left: 2.497262e-03	ci right 2.681464e-03	k: 3054	n:1180000
SLC22A18   1180000 perm   680 sec   (1736 perm/sec)   p_kst 2.588136e-03   p_cons 4.905000e-02   p_joint 4.805085e-04

Joint ci ratio: 1.635781e-01	ci left: 4.428972e-04	ci right 5.225920e-04	k: 573	n:1190000
Cons ci ratio: 1.581903e-02	ci left: 4.868148e-02	ci right 4.945853e-02	k: 58392	n:1190000
KS ci ratio: 7.057647e-02	ci left: 2.494437e-03	ci right 2.677745e-03	k: 3076	n:1190000
SLC22A18   1190000 perm   689 sec   (1726 perm/sec)   p_kst 2.584874e-03   p_cons 4.906891e-02   p_joint 4.815126e-04

Joint ci ratio: 1.697563e-01	ci left: 4.064637e-04	ci right 4.826479e-04	k: 532	n:1200000
Cons ci ratio: 1.574689e-02	ci left: 4.871905e-02	ci right 4.949313e-02	k: 58926	n:1200000
KS ci ratio: 7.033700e-02	ci left: 2.490842e-03	ci right 2.673239e-03	k: 3097	n:1200000
SLC22A18   1200000 perm   699 sec   (1716 perm/sec)   p_kst 2.580833e-03   p_cons 4.910500e-02   p_joint 4.433333e-04

Joint ci ratio: 1.684962e-01	ci left: 4.094363e-04	ci right 4.855502e-04	k: 540	n:1210000
Cons ci ratio: 1.568308e-02	ci left: 4.871237e-02	ci right 4.948318e-02	k: 59407	n:1210000
KS ci ratio: 7.002122e-02	ci left: 2.492991e-03	ci right 2.674692e-03	k: 3125	n:1210000
SLC22A18   1210000 perm   709 sec   (1706 perm/sec)   p_kst 2.582645e-03   p_cons 4.909669e-02   p_joint 4.462810e-04

Joint ci ratio: 1.678768e-01	ci left: 4.092209e-04	ci right 4.849868e-04	k: 544	n:1220000
Cons ci ratio: 1.561511e-02	ci left: 4.873521e-02	ci right 4.950300e-02	k: 59924	n:1220000
KS ci ratio: 6.979846e-02	ci left: 2.488663e-03	ci right 2.669449e-03	k: 3145	n:1220000
SLC22A18   1220000 perm   720 sec   (1696 perm/sec)   p_kst 2.577869e-03   p_cons 4.911803e-02   p_joint 4.459016e-04

Joint ci ratio: 1.672641e-01	ci left: 4.090096e-04	ci right 4.844321e-04	k: 548	n:1230000
Cons ci ratio: 1.555139e-02	ci left: 4.873743e-02	ci right 4.950210e-02	k: 60416	n:1230000
KS ci ratio: 6.951181e-02	ci left: 2.489200e-03	ci right 2.669252e-03	k: 3171	n:1230000
SLC22A18   1230000 perm   730 sec   (1686 perm/sec)   p_kst 2.578049e-03   p_cons 4.911870e-02   p_joint 4.455285e-04

Joint ci ratio: 1.663574e-01	ci left: 4.103478e-04	ci right 4.855659e-04	k: 554	n:1240000
Cons ci ratio: 1.549139e-02	ci left: 4.872194e-02	ci right 4.948339e-02	k: 60886	n:1240000
KS ci ratio: 6.930474e-02	ci left: 2.484183e-03	ci right 2.663315e-03	k: 3190	n:1240000
SLC22A18   1240000 perm   740 sec   (1676 perm/sec)   p_kst 2.572581e-03   p_cons 4.910161e-02   p_joint 4.467742e-04

Joint ci ratio: 1.660587e-01	ci left: 4.085985e-04	ci right 4.833479e-04	k: 556	n:1250000
Cons ci ratio: 1.542548e-02	ci left: 4.874656e-02	ci right 4.950513e-02	k: 61406	n:1250000
KS ci ratio: 6.915354e-02	ci left: 2.475315e-03	ci right 2.653402e-03	k: 3204	n:1250000
SLC22A18   1250000 perm   750 sec   (1667 perm/sec)   p_kst 2.563200e-03   p_cons 4.912480e-02   p_joint 4.448000e-04

Joint ci ratio: 1.653183e-01	ci left: 4.091593e-04	ci right 4.836445e-04	k: 561	n:1260000
Cons ci ratio: 1.536600e-02	ci left: 4.873680e-02	ci right 4.949226e-02	k: 61883	n:1260000
KS ci ratio: 6.894965e-02	ci left: 2.470488e-03	ci right 2.647684e-03	k: 3223	n:1260000
SLC22A18   1260000 perm   760 sec   (1657 perm/sec)   p_kst 2.557937e-03   p_cons 4.911349e-02   p_joint 4.452381e-04

Joint ci ratio: 1.647331e-01	ci left: 4.089571e-04	ci right 4.831158e-04	k: 565	n:1270000
Cons ci ratio: 1.530386e-02	ci left: 4.874759e-02	ci right 4.950014e-02	k: 62386	n:1270000
KS ci ratio: 6.868388e-02	ci left: 2.470382e-03	ci right 2.646859e-03	k: 3248	n:1270000
SLC22A18   1270000 perm   771 sec   (1648 perm/sec)   p_kst 2.557480e-03   p_cons 4.912283e-02   p_joint 4.448819e-04

Joint ci ratio: 1.638667e-01	ci left: 4.102570e-04	ci right 4.842215e-04	k: 571	n:1280000
Cons ci ratio: 1.524322e-02	ci left: 4.875355e-02	ci right 4.950318e-02	k: 62883	n:1280000
KS ci ratio: 6.832707e-02	ci left: 2.477190e-03	ci right 2.653198e-03	k: 3282	n:1280000
SLC22A18   1280000 perm   781 sec   (1638 perm/sec)   p_kst 2.564062e-03   p_cons 4.912734e-02   p_joint 4.460937e-04

Joint ci ratio: 1.637239e-01	ci left: 4.078200e-04	ci right 4.812749e-04	k: 572	n:1290000
Cons ci ratio: 1.518709e-02	ci left: 4.873625e-02	ci right 4.948283e-02	k: 63350	n:1290000
KS ci ratio: 6.810971e-02	ci left: 2.473988e-03	ci right 2.649187e-03	k: 3303	n:1290000
SLC22A18   1290000 perm   792 sec   (1629 perm/sec)   p_kst 2.560465e-03   p_cons 4.910853e-02   p_joint 4.434109e-04

Joint ci ratio: 1.632971e-01	ci left: 4.068962e-04	ci right 4.799748e-04	k: 575	n:1300000
Cons ci ratio: 1.512583e-02	ci left: 4.875448e-02	ci right 4.949830e-02	k: 63863	n:1300000
KS ci ratio: 6.790464e-02	ci left: 2.470080e-03	ci right 2.644455e-03	k: 3323	n:1300000
SLC22A18   1300000 perm   803 sec   (1620 perm/sec)   p_kst 2.556154e-03   p_cons 4.912538e-02   p_joint 4.423077e-04

Joint ci ratio: 1.404970e-01	ci left: 5.521636e-04	ci right 6.363294e-04	k: 777	n:1310000
Cons ci ratio: 1.506655e-02	ci left: 4.876483e-02	ci right 4.950587e-02	k: 64366	n:1310000
KS ci ratio: 6.776239e-02	ci left: 2.461730e-03	ci right 2.635137e-03	k: 3337	n:1310000
SLC22A18   1310000 perm   813 sec   (1610 perm/sec)   p_kst 2.547328e-03   p_cons 4.913435e-02   p_joint 5.931298e-04

Joint ci ratio: 1.399584e-01	ci left: 5.523665e-04	ci right 6.362135e-04	k: 783	n:1320000
Cons ci ratio: 1.501136e-02	ci left: 4.875389e-02	ci right 4.949203e-02	k: 64841	n:1320000
KS ci ratio: 6.755035e-02	ci left: 2.458720e-03	ci right 2.631353e-03	k: 3358	n:1320000
SLC22A18   1320000 perm   824 sec   (1601 perm/sec)   p_kst 2.543939e-03   p_cons 4.912197e-02   p_joint 5.931818e-04

Joint ci ratio: 1.392496e-01	ci left: 5.540184e-04	ci right 6.376549e-04	k: 791	n:1330000
Cons ci ratio: 1.495533e-02	ci left: 4.875211e-02	ci right 4.948745e-02	k: 65328	n:1330000
KS ci ratio: 6.733031e-02	ci left: 2.456496e-03	ci right 2.628388e-03	k: 3380	n:1330000
SLC22A18   1330000 perm   835 sec   (1593 perm/sec)   p_kst 2.541353e-03   p_cons 4.911880e-02   p_joint 5.947368e-04

Joint ci ratio: 1.384649e-01	ci left: 5.563671e-04	ci right 6.398458e-04	k: 800	n:1340000
Cons ci ratio: 1.490027e-02	ci left: 4.874814e-02	ci right 4.948068e-02	k: 65812	n:1340000
KS ci ratio: 6.700392e-02	ci left: 2.462378e-03	ci right 2.633814e-03	k: 3413	n:1340000
SLC22A18   1340000 perm   846 sec   (1584 perm/sec)   p_kst 2.547015e-03   p_cons 4.911343e-02   p_joint 5.970149e-04

Joint ci ratio: 1.378638e-01	ci left: 5.572518e-04	ci right 6.404705e-04	k: 807	n:1350000
Cons ci ratio: 1.484571e-02	ci left: 4.874496e-02	ci right 4.947475e-02	k: 66297	n:1350000
KS ci ratio: 6.675021e-02	ci left: 2.463075e-03	ci right 2.633885e-03	k: 3439	n:1350000
SLC22A18   1350000 perm   857 sec   (1575 perm/sec)   p_kst 2.547407e-03   p_cons 4.910889e-02   p_joint 5.977778e-04

Joint ci ratio: 1.373548e-01	ci left: 5.574142e-04	ci right 6.403247e-04	k: 813	n:1360000
Cons ci ratio: 1.479034e-02	ci left: 4.875063e-02	ci right 4.947776e-02	k: 66794	n:1360000
KS ci ratio: 6.648014e-02	ci left: 2.465209e-03	ci right 2.635449e-03	k: 3467	n:1360000
SLC22A18   1360000 perm   868 sec   (1567 perm/sec)   p_kst 2.549265e-03   p_cons 4.911324e-02   p_joint 5.977941e-04

Joint ci ratio: 1.321007e-01	ci left: 5.998984e-04	ci right 6.854472e-04	k: 879	n:1370000
Cons ci ratio: 1.473616e-02	ci left: 4.875259e-02	ci right 4.947706e-02	k: 67286	n:1370000
KS ci ratio: 6.622282e-02	ci left: 2.466596e-03	ci right 2.636247e-03	k: 3494	n:1370000
SLC22A18   1370000 perm   879 sec   (1559 perm/sec)   p_kst 2.550365e-03   p_cons 4.911387e-02   p_joint 6.416058e-04

Joint ci ratio: 1.318016e-01	ci left: 5.983542e-04	ci right 6.834744e-04	k: 883	n:1380000
Cons ci ratio: 1.468076e-02	ci left: 4.876607e-02	ci right 4.948800e-02	k: 67794	n:1380000
KS ci ratio: 6.602486e-02	ci left: 2.463688e-03	ci right 2.632613e-03	k: 3515	n:1380000
SLC22A18   1380000 perm   890 sec   (1550 perm/sec)   p_kst 2.547101e-03   p_cons 4.912609e-02   p_joint 6.398551e-04

Joint ci ratio: 1.312828e-01	ci left: 5.989197e-04	ci right 6.837589e-04	k: 890	n:1390000
Cons ci ratio: 1.462698e-02	ci left: 4.877291e-02	ci right 4.949228e-02	k: 68293	n:1390000
KS ci ratio: 6.583801e-02	ci left: 2.460115e-03	ci right 2.628299e-03	k: 3535	n:1390000
SLC22A18   1390000 perm   902 sec   (1541 perm/sec)   p_kst 2.543165e-03   p_cons 4.913165e-02   p_joint 6.402878e-04

Joint ci ratio: 1.307701e-01	ci left: 5.994779e-04	ci right 6.840387e-04	k: 897	n:1400000
Cons ci ratio: 1.457613e-02	ci left: 4.876472e-02	ci right 4.948144e-02	k: 68771	n:1400000
KS ci ratio: 6.556038e-02	ci left: 2.463619e-03	ci right 2.631306e-03	k: 3565	n:1400000
SLC22A18   1400000 perm   913 sec   (1533 perm/sec)   p_kst 2.546429e-03   p_cons 4.912214e-02   p_joint 6.407143e-04

Joint ci ratio: 1.301914e-01	ci left: 6.007148e-04	ci right 6.850462e-04	k: 905	n:1410000
Cons ci ratio: 1.452217e-02	ci left: 4.877996e-02	ci right 4.949423e-02	k: 69282	n:1410000
KS ci ratio: 6.543233e-02	ci left: 2.455913e-03	ci right 2.622737e-03	k: 3579	n:1410000
SLC22A18   1410000 perm   925 sec   (1524 perm/sec)   p_kst 2.538298e-03   p_cons 4.913617e-02   p_joint 6.418440e-04

Joint ci ratio: 1.298337e-01	ci left: 5.998910e-04	ci right 6.838575e-04	k: 910	n:1420000
Cons ci ratio: 1.447121e-02	ci left: 4.877956e-02	ci right 4.949129e-02	k: 69771	n:1420000
KS ci ratio: 6.515977e-02	ci left: 2.459400e-03	ci right 2.625738e-03	k: 3609	n:1420000
SLC22A18   1420000 perm   937 sec   (1516 perm/sec)   p_kst 2.541549e-03   p_cons 4.913451e-02   p_joint 6.408451e-04

Joint ci ratio: 1.294789e-01	ci left: 5.990791e-04	ci right 6.826851e-04	k: 915	n:1430000
Cons ci ratio: 1.442034e-02	ci left: 4.878196e-02	ci right 4.949120e-02	k: 70264	n:1430000
KS ci ratio: 6.485488e-02	ci left: 2.465591e-03	ci right 2.631539e-03	k: 3643	n:1430000
SLC22A18   1430000 perm   948 sec   (1508 perm/sec)   p_kst 2.547552e-03   p_cons 4.913566e-02   p_joint 6.398601e-04

Joint ci ratio: 1.286388e-01	ci left: 6.029832e-04	ci right 6.865464e-04	k: 927	n:1440000
Cons ci ratio: 1.437065e-02	ci left: 4.878017e-02	ci right 4.948692e-02	k: 70751	n:1440000
KS ci ratio: 6.459827e-02	ci left: 2.468282e-03	ci right 2.633729e-03	k: 3672	n:1440000
SLC22A18   1440000 perm   960 sec   (1500 perm/sec)   p_kst 2.550000e-03   p_cons 4.913264e-02   p_joint 6.437500e-04

Joint ci ratio: 1.283626e-01	ci left: 6.014946e-04	ci right 6.846589e-04	k: 931	n:1450000
Cons ci ratio: 1.431999e-02	ci left: 4.878803e-02	ci right 4.949239e-02	k: 71252	n:1450000
KS ci ratio: 6.439701e-02	ci left: 2.466866e-03	ci right 2.631683e-03	k: 3695	n:1450000
SLC22A18   1450000 perm   972 sec   (1492 perm/sec)   p_kst 2.548276e-03   p_cons 4.913931e-02   p_joint 6.420690e-04

Joint ci ratio: 1.344949e-01	ci left: 5.423924e-04	ci right 6.212544e-04	k: 848	n:1460000
Cons ci ratio: 1.427352e-02	ci left: 4.877190e-02	ci right 4.947372e-02	k: 71718	n:1460000
KS ci ratio: 6.417169e-02	ci left: 2.467491e-03	ci right 2.631752e-03	k: 3721	n:1460000
SLC22A18   1460000 perm   984 sec   (1484 perm/sec)   p_kst 2.548630e-03   p_cons 4.912192e-02   p_joint 5.808219e-04

Joint ci ratio: 1.341793e-01	ci left: 5.413323e-04	ci right 6.198407e-04	k: 852	n:1470000
Cons ci ratio: 1.422460e-02	ci left: 4.877498e-02	ci right 4.947442e-02	k: 72212	n:1470000
KS ci ratio: 6.393161e-02	ci left: 2.469448e-03	ci right 2.633202e-03	k: 3749	n:1470000
SLC22A18   1470000 perm   995 sec   (1477 perm/sec)   p_kst 2.550340e-03   p_cons 4.912381e-02   p_joint 5.795918e-04

Joint ci ratio: 1.265423e-01	ci left: 6.069638e-04	ci right 6.896051e-04	k: 958	n:1480000
Cons ci ratio: 1.417741e-02	ci left: 4.876994e-02	ci right 4.946696e-02	k: 72694	n:1480000
KS ci ratio: 6.368576e-02	ci left: 2.472045e-03	ci right 2.635317e-03	k: 3778	n:1480000
SLC22A18   1480000 perm   1007 sec   (1469 perm/sec)   p_kst 2.552703e-03   p_cons 4.911757e-02   p_joint 6.472973e-04

Joint ci ratio: 1.259526e-01	ci left: 6.087398e-04	ci right 6.912078e-04	k: 967	n:1490000
Cons ci ratio: 1.412541e-02	ci left: 4.879975e-02	ci right 4.949462e-02	k: 73228	n:1490000
KS ci ratio: 6.350126e-02	ci left: 2.469984e-03	ci right 2.632630e-03	k: 3800	n:1490000
SLC22A18   1490000 perm   1019 sec   (1462 perm/sec)   p_kst 2.550336e-03   p_cons 4.914631e-02   p_joint 6.489933e-04

Joint ci ratio: 1.256286e-01	ci left: 6.079100e-04	ci right 6.900379e-04	k: 972	n:1500000
Cons ci ratio: 1.407538e-02	ci left: 4.881986e-02	ci right 4.951254e-02	k: 73748	n:1500000
KS ci ratio: 6.331836e-02	ci left: 2.467952e-03	ci right 2.629978e-03	k: 3822	n:1500000
SLC22A18   1500000 perm   1031 sec   (1454 perm/sec)   p_kst 2.548000e-03   p_cons 4.916533e-02   p_joint 6.480000e-04

Joint ci ratio: 1.254355e-01	ci left: 6.058084e-04	ci right 6.875173e-04	k: 975	n:1510000
Cons ci ratio: 1.402986e-02	ci left: 4.881332e-02	ci right 4.950365e-02	k: 74228	n:1510000
KS ci ratio: 6.311235e-02	ci left: 2.467902e-03	ci right 2.629379e-03	k: 3847	n:1510000
SLC22A18   1510000 perm   1044 sec   (1447 perm/sec)   p_kst 2.547682e-03   p_cons 4.915762e-02   p_joint 6.456954e-04

Joint ci ratio: 1.181496e-01	ci left: 6.809202e-04	ci right 7.670532e-04	k: 1099	n:1520000
Cons ci ratio: 1.398457e-02	ci left: 4.880817e-02	ci right 4.949618e-02	k: 74710	n:1520000
KS ci ratio: 6.295724e-02	ci left: 2.463969e-03	ci right 2.624778e-03	k: 3866	n:1520000
SLC22A18   1520000 perm   1056 sec   (1440 perm/sec)   p_kst 2.543421e-03   p_cons 4.915132e-02   p_joint 7.230263e-04

Joint ci ratio: 1.180426e-01	ci left: 6.777382e-04	ci right 7.633857e-04	k: 1101	n:1530000
Cons ci ratio: 1.394158e-02	ci left: 4.879072e-02	ci right 4.947635e-02	k: 75173	n:1530000
KS ci ratio: 6.285194e-02	ci left: 2.456227e-03	ci right 2.616253e-03	k: 3879	n:1530000
SLC22A18   1530000 perm   1068 sec   (1432 perm/sec)   p_kst 2.535294e-03   p_cons 4.913268e-02   p_joint 7.196078e-04

Joint ci ratio: 1.177226e-01	ci left: 6.771185e-04	ci right 7.624396e-04	k: 1107	n:1540000
Cons ci ratio: 1.390159e-02	ci left: 4.875602e-02	ci right 4.943918e-02	k: 75609	n:1540000
KS ci ratio: 6.265848e-02	ci left: 2.455618e-03	ci right 2.615094e-03	k: 3903	n:1540000
SLC22A18   1540000 perm   1081 sec   (1425 perm/sec)   p_kst 2.534416e-03   p_cons 4.909675e-02   p_joint 7.188312e-04

Joint ci ratio: 1.172473e-01	ci left: 6.783859e-04	ci right 7.634976e-04	k: 1116	n:1550000
Cons ci ratio: 1.385791e-02	ci left: 4.874878e-02	ci right 4.942968e-02	k: 76087	n:1550000
KS ci ratio: 6.245085e-02	ci left: 2.456287e-03	ci right 2.615258e-03	k: 3929	n:1550000
SLC22A18   1550000 perm   1093 sec   (1418 perm/sec)   p_kst 2.534839e-03   p_cons 4.908839e-02   p_joint 7.200000e-04

Joint ci ratio: 1.169337e-01	ci left: 6.777707e-04	ci right 7.625621e-04	k: 1122	n:1560000
Cons ci ratio: 1.381265e-02	ci left: 4.875505e-02	ci right 4.943380e-02	k: 76586	n:1560000
KS ci ratio: 6.224528e-02	ci left: 2.456948e-03	ci right 2.615420e-03	k: 3955	n:1560000
SLC22A18   1560000 perm   1105 sec   (1411 perm/sec)   p_kst 2.535256e-03   p_cons 4.909359e-02   p_joint 7.192308e-04

Joint ci ratio: 1.164679e-01	ci left: 6.790189e-04	ci right 7.636047e-04	k: 1131	n:1570000
Cons ci ratio: 1.376352e-02	ci left: 4.879046e-02	ci right 4.946726e-02	k: 77131	n:1570000
KS ci ratio: 6.200271e-02	ci left: 2.460738e-03	ci right 2.618813e-03	k: 3986	n:1570000
SLC22A18   1570000 perm   1118 sec   (1404 perm/sec)   p_kst 2.538854e-03   p_cons 4.912803e-02   p_joint 7.203822e-04

Joint ci ratio: 1.160585e-01	ci left: 6.796374e-04	ci right 7.639823e-04	k: 1139	n:1580000
Cons ci ratio: 1.372122e-02	ci left: 4.878252e-02	ci right 4.945711e-02	k: 77608	n:1580000
KS ci ratio: 6.180152e-02	ci left: 2.461364e-03	ci right 2.618949e-03	k: 4012	n:1580000
SLC22A18   1580000 perm   1130 sec   (1398 perm/sec)   p_kst 2.539241e-03   p_cons 4.911899e-02   p_joint 7.208861e-04

Joint ci ratio: 1.158049e-01	ci left: 6.784164e-04	ci right 7.624132e-04	k: 1144	n:1590000
Cons ci ratio: 1.368033e-02	ci left: 4.876778e-02	ci right 4.944015e-02	k: 78074	n:1590000
KS ci ratio: 6.162522e-02	ci left: 2.460126e-03	ci right 2.617166e-03	k: 4035	n:1590000
SLC22A18   1590000 perm   1143 sec   (1391 perm/sec)   p_kst 2.537736e-03   p_cons 4.910314e-02   p_joint 7.194969e-04

Joint ci ratio: 1.154525e-01	ci left: 6.784247e-04	ci right 7.621496e-04	k: 1151	n:1600000
Cons ci ratio: 1.364089e-02	ci left: 4.874576e-02	ci right 4.941587e-02	k: 78528	n:1600000
KS ci ratio: 6.141251e-02	ci left: 2.461981e-03	ci right 2.618578e-03	k: 4063	n:1600000
SLC22A18   1600000 perm   1156 sec   (1384 perm/sec)   p_kst 2.539375e-03   p_cons 4.908000e-02   p_joint 7.193750e-04

Joint ci ratio: 1.149545e-01	ci left: 6.802431e-04	ci right 7.638058e-04	k: 1161	n:1610000
Cons ci ratio: 1.360007e-02	ci left: 4.873578e-02	ci right 4.940373e-02	k: 79001	n:1610000
KS ci ratio: 6.123951e-02	ci left: 2.460756e-03	ci right 2.616818e-03	k: 4086	n:1610000
SLC22A18   1610000 perm   1168 sec   (1378 perm/sec)   p_kst 2.537888e-03   p_cons 4.906894e-02   p_joint 7.211180e-04

Joint ci ratio: 1.147573e-01	ci left: 6.784423e-04	ci right 7.616310e-04	k: 1165	n:1620000
Cons ci ratio: 1.355711e-02	ci left: 4.874315e-02	ci right 4.940908e-02	k: 79502	n:1620000
KS ci ratio: 6.110523e-02	ci left: 2.456507e-03	ci right 2.611946e-03	k: 4104	n:1620000
SLC22A18   1620000 perm   1181 sec   (1372 perm/sec)   p_kst 2.533333e-03   p_cons 4.907531e-02   p_joint 7.191358e-04

Joint ci ratio: 1.144632e-01	ci left: 6.778555e-04	ci right 7.607449e-04	k: 1171	n:1630000
Cons ci ratio: 1.351802e-02	ci left: 4.872659e-02	ci right 4.939035e-02	k: 79964	n:1630000
KS ci ratio: 6.097926e-02	ci left: 2.451707e-03	ci right 2.606511e-03	k: 4121	n:1630000
SLC22A18   1630000 perm   1194 sec   (1365 perm/sec)   p_kst 2.528221e-03   p_cons 4.905767e-02   p_joint 7.184049e-04

Joint ci ratio: 1.138815e-01	ci left: 6.808304e-04	ci right 7.636321e-04	k: 1183	n:1640000
Cons ci ratio: 1.347811e-02	ci left: 4.871813e-02	ci right 4.937981e-02	k: 80439	n:1640000
KS ci ratio: 6.082459e-02	ci left: 2.449367e-03	ci right 2.603618e-03	k: 4142	n:1640000
SLC22A18   1640000 perm   1207 sec   (1359 perm/sec)   p_kst 2.525610e-03   p_cons 4.904817e-02   p_joint 7.213415e-04

Joint ci ratio: 1.133560e-01	ci left: 6.831814e-04	ci right 7.658600e-04	k: 1194	n:1650000
Cons ci ratio: 1.343690e-02	ci left: 4.872125e-02	ci right 4.938094e-02	k: 80933	n:1650000
KS ci ratio: 6.061276e-02	ci left: 2.451831e-03	ci right 2.605681e-03	k: 4171	n:1650000
SLC22A18   1650000 perm   1220 sec   (1353 perm/sec)   p_kst 2.527879e-03   p_cons 4.905030e-02   p_joint 7.236364e-04

Joint ci ratio: 1.127910e-01	ci left: 6.860904e-04	ci right 7.686796e-04	k: 1206	n:1660000
Cons ci ratio: 1.339468e-02	ci left: 4.873395e-02	ci right 4.939172e-02	k: 81443	n:1660000
KS ci ratio: 6.039591e-02	ci left: 2.454860e-03	ci right 2.608329e-03	k: 4201	n:1660000
SLC22A18   1660000 perm   1233 sec   (1347 perm/sec)   p_kst 2.530723e-03   p_cons 4.906205e-02   p_joint 7.265060e-04

Joint ci ratio: 1.123265e-01	ci left: 6.878015e-04	ci right 7.702332e-04	k: 1216	n:1670000
Cons ci ratio: 1.335371e-02	ci left: 4.874053e-02	ci right 4.939636e-02	k: 81943	n:1670000
KS ci ratio: 6.020991e-02	ci left: 2.455495e-03	ci right 2.608514e-03	k: 4227	n:1670000
SLC22A18   1670000 perm   1246 sec   (1341 perm/sec)   p_kst 2.531138e-03   p_cons 4.906766e-02   p_joint 7.281437e-04

Joint ci ratio: 1.120049e-01	ci left: 6.877573e-04	ci right 7.699320e-04	k: 1223	n:1680000
Cons ci ratio: 1.331541e-02	ci left: 4.873102e-02	ci right 4.938482e-02	k: 82416	n:1680000
KS ci ratio: 6.001855e-02	ci left: 2.456709e-03	ci right 2.609300e-03	k: 4254	n:1680000
SLC22A18   1680000 perm   1259 sec   (1335 perm/sec)   p_kst 2.532143e-03   p_cons 4.905714e-02   p_joint 7.279762e-04

Joint ci ratio: 1.181002e-01	ci left: 6.129982e-04	ci right 6.905047e-04	k: 1100	n:1690000
Cons ci ratio: 1.327727e-02	ci left: 4.872280e-02	ci right 4.937461e-02	k: 82891	n:1690000
KS ci ratio: 5.985002e-02	ci left: 2.456160e-03	ci right 2.608274e-03	k: 4278	n:1690000
SLC22A18   1690000 perm   1272 sec   (1328 perm/sec)   p_kst 2.531361e-03   p_cons 4.904793e-02   p_joint 6.508876e-04

Joint ci ratio: 1.179933e-01	ci left: 6.105340e-04	ci right 6.876542e-04	k: 1102	n:1700000
Cons ci ratio: 1.323996e-02	ci left: 4.871116e-02	ci right 4.936097e-02	k: 83360	n:1700000
KS ci ratio: 5.972466e-02	ci left: 2.452142e-03	ci right 2.603678e-03	k: 4296	n:1700000
SLC22A18   1700000 perm   1286 sec   (1322 perm/sec)   p_kst 2.527059e-03   p_cons 4.903529e-02   p_joint 6.482353e-04

Joint ci ratio: 1.177268e-01	ci left: 6.098014e-04	ci right 6.866430e-04	k: 1107	n:1710000
Cons ci ratio: 1.319849e-02	ci left: 4.873114e-02	ci right 4.937916e-02	k: 83883	n:1710000
KS ci ratio: 5.962780e-02	ci left: 2.445867e-03	ci right 2.596762e-03	k: 4310	n:1710000
SLC22A18   1710000 perm   1299 sec   (1316 perm/sec)   p_kst 2.520468e-03   p_cons 4.905439e-02   p_joint 6.473684e-04

Joint ci ratio: 1.175679e-01	ci left: 6.079489e-04	ci right 6.844464e-04	k: 1110	n:1720000
Cons ci ratio: 1.316175e-02	ci left: 4.872017e-02	ci right 4.936623e-02	k: 84353	n:1720000
KS ci ratio: 5.944879e-02	ci left: 2.446538e-03	ci right 2.597006e-03	k: 4336	n:1720000
SLC22A18   1720000 perm   1313 sec   (1310 perm/sec)   p_kst 2.520930e-03   p_cons 4.904244e-02   p_joint 6.453488e-04

Joint ci ratio: 1.170944e-01	ci left: 6.094844e-04	ci right 6.858449e-04	k: 1119	n:1730000
Cons ci ratio: 1.312296e-02	ci left: 4.872605e-02	ci right 4.937026e-02	k: 84852	n:1730000
KS ci ratio: 5.927138e-02	ci left: 2.447202e-03	ci right 2.597246e-03	k: 4362	n:1730000
SLC22A18   1730000 perm   1326 sec   (1304 perm/sec)   p_kst 2.521387e-03   p_cons 4.904740e-02   p_joint 6.468208e-04

Joint ci ratio: 1.227039e-01	ci left: 5.502320e-04	ci right 6.227114e-04	k: 1019	n:1740000
Cons ci ratio: 1.308507e-02	ci left: 4.872784e-02	ci right 4.937021e-02	k: 85344	n:1740000
KS ci ratio: 5.904835e-02	ci left: 2.451823e-03	ci right 2.601565e-03	k: 4395	n:1740000
SLC22A18   1740000 perm   1340 sec   (1298 perm/sec)   p_kst 2.525862e-03   p_cons 4.904828e-02   p_joint 5.856322e-04

Joint ci ratio: 1.223446e-01	ci left: 5.504113e-04	ci right 6.226866e-04	k: 1025	n:1750000
Cons ci ratio: 1.304951e-02	ci left: 4.871538e-02	ci right 4.935583e-02	k: 85811	n:1750000
KS ci ratio: 5.882783e-02	ci left: 2.456392e-03	ci right 2.605834e-03	k: 4428	n:1750000
SLC22A18   1750000 perm   1354 sec   (1292 perm/sec)   p_kst 2.530286e-03   p_cons 4.903486e-02   p_joint 5.857143e-04

Joint ci ratio: 1.221069e-01	ci left: 5.494872e-04	ci right 6.214909e-04	k: 1029	n:1760000
Cons ci ratio: 1.301122e-02	ci left: 4.872459e-02	ci right 4.936326e-02	k: 86316	n:1760000
KS ci ratio: 5.867571e-02	ci left: 2.455311e-03	ci right 2.604288e-03	k: 4451	n:1760000
SLC22A18   1760000 perm   1368 sec   (1287 perm/sec)   p_kst 2.528977e-03   p_cons 4.904318e-02   p_joint 5.846591e-04

Joint ci ratio: 1.216940e-01	ci left: 5.502169e-04	ci right 6.220549e-04	k: 1036	n:1770000
Cons ci ratio: 1.297476e-02	ci left: 4.872299e-02	ci right 4.935984e-02	k: 86802	n:1770000
KS ci ratio: 5.851822e-02	ci left: 2.454800e-03	ci right 2.603333e-03	k: 4475	n:1770000
SLC22A18   1770000 perm   1381 sec   (1281 perm/sec)   p_kst 2.528249e-03   p_cons 4.904068e-02   p_joint 5.853107e-04

Joint ci ratio: 1.212273e-01	ci left: 5.514837e-04	ci right 6.231911e-04	k: 1044	n:1780000
Cons ci ratio: 1.294064e-02	ci left: 4.870685e-02	ci right 4.934181e-02	k: 87262	n:1780000
KS ci ratio: 5.832950e-02	ci left: 2.457063e-03	ci right 2.605237e-03	k: 4504	n:1780000
SLC22A18   1780000 perm   1395 sec   (1276 perm/sec)   p_kst 2.530337e-03   p_cons 4.902360e-02   p_joint 5.865169e-04

Joint ci ratio: 1.209383e-01	ci left: 5.511115e-04	ci right 6.225874e-04	k: 1049	n:1790000
Cons ci ratio: 1.290245e-02	ci left: 4.872209e-02	ci right 4.935535e-02	k: 87778	n:1790000
KS ci ratio: 5.820054e-02	ci left: 2.454347e-03	ci right 2.602019e-03	k: 4524	n:1790000
SLC22A18   1790000 perm   1409 sec   (1270 perm/sec)   p_kst 2.527374e-03   p_cons 4.903799e-02   p_joint 5.860335e-04

Joint ci ratio: 1.278229e-01	ci left: 4.888375e-04	ci right 5.561198e-04	k: 939	n:1800000
Cons ci ratio: 1.286276e-02	ci left: 4.875045e-02	ci right 4.938211e-02	k: 88318	n:1800000
KS ci ratio: 5.807243e-02	ci left: 2.451661e-03	ci right 2.598836e-03	k: 4544	n:1800000
SLC22A18   1800000 perm   1423 sec   (1265 perm/sec)   p_kst 2.524444e-03   p_cons 4.906556e-02   p_joint 5.216667e-04

Joint ci ratio: 1.275518e-01	ci left: 4.882761e-04	ci right 5.553278e-04	k: 943	n:1810000
Cons ci ratio: 1.282685e-02	ci left: 4.875371e-02	ci right 4.938364e-02	k: 88813	n:1810000
KS ci ratio: 5.793244e-02	ci left: 2.450094e-03	ci right 2.596809e-03	k: 4566	n:1810000
SLC22A18   1810000 perm   1437 sec   (1259 perm/sec)   p_kst 2.522652e-03   p_cons 4.906796e-02   p_joint 5.209945e-04

Joint ci ratio: 1.270815e-01	ci left: 4.893169e-04	ci right 5.562451e-04	k: 950	n:1820000
Cons ci ratio: 1.279221e-02	ci left: 4.874982e-02	ci right 4.937799e-02	k: 89295	n:1820000
KS ci ratio: 5.776192e-02	ci left: 2.451253e-03	ci right 2.597590e-03	k: 4593	n:1820000
SLC22A18   1820000 perm   1452 sec   (1254 perm/sec)   p_kst 2.523626e-03   p_cons 4.906319e-02   p_joint 5.219780e-04

Joint ci ratio: 1.266824e-01	ci left: 4.898177e-04	ci right 5.565882e-04	k: 956	n:1830000
Cons ci ratio: 1.275838e-02	ci left: 4.874216e-02	ci right 4.936856e-02	k: 89770	n:1830000
KS ci ratio: 5.756793e-02	ci left: 2.454554e-03	ci right 2.600580e-03	k: 4624	n:1830000
SLC22A18   1830000 perm   1466 sec   (1248 perm/sec)   p_kst 2.526776e-03   p_cons 4.905464e-02   p_joint 5.224044e-04

Joint ci ratio: 1.188620e-01	ci left: 5.556413e-04	ci right 6.263807e-04	k: 1086	n:1840000
Cons ci ratio: 1.272193e-02	ci left: 4.875572e-02	ci right 4.938049e-02	k: 90284	n:1840000
KS ci ratio: 5.738823e-02	ci left: 2.456748e-03	ci right 2.602433e-03	k: 4653	n:1840000
SLC22A18   1840000 perm   1480 sec   (1243 perm/sec)   p_kst 2.528804e-03   p_cons 4.906739e-02   p_joint 5.902174e-04

Joint ci ratio: 1.258306e-01	ci left: 4.913275e-04	ci right 5.578199e-04	k: 969	n:1850000
Cons ci ratio: 1.268872e-02	ci left: 4.874757e-02	ci right 4.937060e-02	k: 90758	n:1850000
KS ci ratio: 5.720408e-02	ci left: 2.459453e-03	ci right 2.604814e-03	k: 4683	n:1850000
SLC22A18   1850000 perm   1495 sec   (1237 perm/sec)   p_kst 2.531351e-03   p_cons 4.905838e-02   p_joint 5.237838e-04

Joint ci ratio: 1.254432e-01	ci left: 4.918104e-04	ci right 5.581479e-04	k: 975	n:1860000
Cons ci ratio: 1.265578e-02	ci left: 4.873952e-02	ci right 4.936081e-02	k: 91232	n:1860000
KS ci ratio: 5.708851e-02	ci left: 2.456299e-03	ci right 2.601171e-03	k: 4702	n:1860000
SLC22A18   1860000 perm   1510 sec   (1232 perm/sec)   p_kst 2.527957e-03   p_cons 4.904946e-02   p_joint 5.241935e-04

Joint ci ratio: 1.251231e-01	ci left: 4.917704e-04	ci right 5.579207e-04	k: 980	n:1870000
Cons ci ratio: 1.262294e-02	ci left: 4.873262e-02	ci right 4.935220e-02	k: 91708	n:1870000
KS ci ratio: 5.690722e-02	ci left: 2.458978e-03	ci right 2.603532e-03	k: 4732	n:1870000
SLC22A18   1870000 perm   1525 sec   (1226 perm/sec)   p_kst 2.530481e-03   p_cons 4.904171e-02   p_joint 5.240642e-04

Joint ci ratio: 1.174126e-01	ci left: 5.577565e-04	ci right 6.278393e-04	k: 1113	n:1880000
Cons ci ratio: 1.259015e-02	ci left: 4.872739e-02	ci right 4.934528e-02	k: 92187	n:1880000
KS ci ratio: 5.674557e-02	ci left: 2.460056e-03	ci right 2.604250e-03	k: 4759	n:1880000
SLC22A18   1880000 perm   1539 sec   (1221 perm/sec)   p_kst 2.531383e-03   p_cons 4.903564e-02   p_joint 5.920213e-04

Joint ci ratio: 1.171500e-01	ci left: 5.573733e-04	ci right 6.272404e-04	k: 1118	n:1890000
Cons ci ratio: 1.255604e-02	ci left: 4.873382e-02	ci right 4.935010e-02	k: 92688	n:1890000
KS ci ratio: 5.662088e-02	ci left: 2.457993e-03	ci right 2.601739e-03	k: 4780	n:1890000
SLC22A18   1890000 perm   1554 sec   (1216 perm/sec)   p_kst 2.529101e-03   p_cons 4.904127e-02   p_joint 5.915344e-04

Joint ci ratio: 1.167853e-01	ci left: 5.580162e-04	ci right 6.277311e-04	k: 1125	n:1900000
Cons ci ratio: 1.252023e-02	ci left: 4.875488e-02	ci right 4.936966e-02	k: 93217	n:1900000
KS ci ratio: 5.643811e-02	ci left: 2.461141e-03	ci right 2.604592e-03	k: 4811	n:1900000
SLC22A18   1900000 perm   1569 sec   (1211 perm/sec)   p_kst 2.532105e-03   p_cons 4.906158e-02   p_joint 5.921053e-04

Joint ci ratio: 1.166301e-01	ci left: 5.566195e-04	ci right 6.260611e-04	k: 1128	n:1910000
Cons ci ratio: 1.248577e-02	ci left: 4.876789e-02	ci right 4.938113e-02	k: 93731	n:1910000
KS ci ratio: 5.630375e-02	ci left: 2.460128e-03	ci right 2.603167e-03	k: 4834	n:1910000
SLC22A18   1910000 perm   1584 sec   (1206 perm/sec)   p_kst 2.530890e-03   p_cons 4.907382e-02   p_joint 5.905759e-04

Joint ci ratio: 1.163214e-01	ci left: 5.567544e-04	ci right 6.260164e-04	k: 1134	n:1920000
Cons ci ratio: 1.245243e-02	ci left: 4.877453e-02	ci right 4.938621e-02	k: 94233	n:1920000
KS ci ratio: 5.615296e-02	ci left: 2.460666e-03	ci right 2.603341e-03	k: 4860	n:1920000
SLC22A18   1920000 perm   1599 sec   (1201 perm/sec)   p_kst 2.531250e-03   p_cons 4.907969e-02   p_joint 5.906250e-04

Joint ci ratio: 1.089364e-01	ci left: 6.339361e-04	ci right 7.074720e-04	k: 1293	n:1930000
Cons ci ratio: 1.241998e-02	ci left: 4.877646e-02	ci right 4.938655e-02	k: 94726	n:1930000
KS ci ratio: 5.602062e-02	ci left: 2.459667e-03	ci right 2.601936e-03	k: 4883	n:1930000
SLC22A18   1930000 perm   1614 sec   (1196 perm/sec)   p_kst 2.530052e-03   p_cons 4.908083e-02   p_joint 6.699482e-04

Joint ci ratio: 1.087685e-01	ci left: 6.326741e-04	ci right 7.059432e-04	k: 1297	n:1940000
Cons ci ratio: 1.238538e-02	ci left: 4.879636e-02	ci right 4.940499e-02	k: 95254	n:1940000
KS ci ratio: 5.586639e-02	ci left: 2.460711e-03	ci right 2.602636e-03	k: 4910	n:1940000
SLC22A18   1940000 perm   1629 sec   (1191 perm/sec)   p_kst 2.530928e-03   p_cons 4.910000e-02   p_joint 6.685567e-04

Joint ci ratio: 1.083933e-01	ci left: 6.339196e-04	ci right 7.070636e-04	k: 1306	n:1950000
Cons ci ratio: 1.235352e-02	ci left: 4.879765e-02	ci right 4.940472e-02	k: 95746	n:1950000
KS ci ratio: 5.571342e-02	ci left: 2.461745e-03	ci right 2.603329e-03	k: 4937	n:1950000
SLC22A18   1950000 perm   1644 sec   (1186 perm/sec)   p_kst 2.531795e-03   p_cons 4.910051e-02   p_joint 6.697436e-04

Joint ci ratio: 6.470849e-02	ci left: 1.808393e-03	ci right 1.929822e-03	k: 3662	n:1960000
Cons ci ratio: 1.167994e-02	ci left: 5.402844e-02	ci right 5.466369e-02	k: 106517	n:1960000
KS ci ratio: 5.557854e-02	ci left: 2.461259e-03	ci right 2.602462e-03	k: 4961	n:1960000
SLC22A18   1960000 perm   1659 sec   (1181 perm/sec)   p_kst 2.531122e-03   p_cons 5.434541e-02   p_joint 1.868367e-03

Outputting figure to mutsig2_images.part000000000159/SLC22A18.3_1315_1960000_0.0025311_0.054345_0.0018684.png
                gene_name: SLC22A18
               theta_stop: 0.065 
                    nperm: 1960000 
                     p_ks: 0.0025 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0026 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0019 

Current progress: 51 percent done.
SLC22A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
SLC22A4   10000 perm   1 sec   (6786 perm/sec)   p_kst 9.084000e-01   p_cons 8.315000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC22A4.3_1696_10000_0.9084_0.8315_1.png
                gene_name: SLC22A4
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SLC25A32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
Cons ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
SLC25A32   10000 perm   1 sec   (7221 perm/sec)   p_kst 1.443000e-01   p_cons 1.797000e-01   p_joint 1.256000e-01

Joint ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
Cons ci ratio: 5.612130e-02	ci left: 1.905673e-01	ci right 2.016211e-01	k: 3921	n:20000
KS ci ratio: 6.857068e-02	ci left: 1.356129e-01	ci right 1.452919e-01	k: 2808	n:20000
SLC25A32   20000 perm   3 sec   (6399 perm/sec)   p_kst 1.404000e-01   p_cons 1.960500e-01   p_joint 1.098500e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A32.3_976_20000_0.1404_0.19605_0.10985.png
                gene_name: SLC25A32
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
SLC25A39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
Cons ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
SLC25A39   10000 perm   1 sec   (7025 perm/sec)   p_kst 7.790000e-02   p_cons 5.675000e-01   p_joint 4.664000e-01

Joint ci ratio: 4.685374e-02	ci left: 2.531374e-01	ci right 2.653327e-01	k: 5184	n:20000
Cons ci ratio: 2.405644e-02	ci left: 5.634546e-01	ci right 5.772249e-01	k: 11407	n:20000
KS ci ratio: 9.723735e-02	ci left: 7.148437e-02	ci right 7.883971e-02	k: 1502	n:20000
SLC25A39   20000 perm   3 sec   (6170 perm/sec)   p_kst 7.510000e-02   p_cons 5.703500e-01   p_joint 2.592000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A39.3_1124_20000_0.0751_0.57035_0.2592.png
                gene_name: SLC25A39
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 56 percent done.
SLC26A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
Cons ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
KS ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
SLC26A10   10000 perm   2 sec   (6548 perm/sec)   p_kst 5.604000e-01   p_cons 8.893000e-01   p_joint 7.448000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A10.3_1748_10000_0.5604_0.8893_0.7448.png
                gene_name: SLC26A10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 58 percent done.
SLC26A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
SLC26A2   10000 perm   2 sec   (6516 perm/sec)   p_kst 8.733000e-01   p_cons 2.840000e-02   p_joint 1.677000e-01

Joint ci ratio: 5.621939e-02	ci left: 1.900233e-01	ci right 2.010654e-01	k: 3910	n:20000
Cons ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
KS ci ratio: 1.048962e-02	ci left: 8.700831e-01	ci right 8.793077e-01	k: 17495	n:20000
SLC26A2   20000 perm   3 sec   (5850 perm/sec)   p_kst 8.747500e-01   p_cons 2.870000e-02   p_joint 1.955000e-01

Joint ci ratio: 3.713835e-02	ci left: 2.657441e-01	ci right 2.758336e-01	k: 8123	n:30000
Cons ci ratio: 1.314246e-01	ci left: 2.690430e-02	ci right 3.072102e-02	k: 863	n:30000
KS ci ratio: 8.529911e-03	ci left: 8.718460e-01	ci right 8.793477e-01	k: 26269	n:30000
SLC26A2   30000 perm   5 sec   (5582 perm/sec)   p_kst 8.756333e-01   p_cons 2.876667e-02   p_joint 2.707667e-01

Joint ci ratio: 4.043911e-02	ci left: 1.863641e-01	ci right 1.940810e-01	k: 7608	n:40000
Cons ci ratio: 1.148481e-01	ci left: 2.667242e-02	ci right 2.994654e-02	k: 1131	n:40000
KS ci ratio: 7.345684e-03	ci left: 8.735898e-01	ci right 8.800554e-01	k: 35074	n:40000
SLC26A2   40000 perm   7 sec   (5419 perm/sec)   p_kst 8.768500e-01   p_cons 2.827500e-02   p_joint 1.902000e-01

Joint ci ratio: 3.807386e-02	ci left: 1.715792e-01	ci right 1.782586e-01	k: 8745	n:50000
Cons ci ratio: 1.025744e-01	ci left: 2.692241e-02	ci right 2.985269e-02	k: 1418	n:50000
KS ci ratio: 6.575284e-03	ci left: 8.737661e-01	ci right 8.795501e-01	k: 43834	n:50000
SLC26A2   50000 perm   9 sec   (5285 perm/sec)   p_kst 8.766800e-01   p_cons 2.836000e-02   p_joint 1.749000e-01

Joint ci ratio: 3.828571e-02	ci left: 1.458784e-01	ci right 1.515890e-01	k: 8923	n:60000
Cons ci ratio: 9.391585e-02	ci left: 2.688992e-02	ci right 2.955597e-02	k: 1692	n:60000
KS ci ratio: 5.976319e-03	ci left: 8.749677e-01	ci right 8.802290e-01	k: 52657	n:60000
SLC26A2   60000 perm   12 sec   (5170 perm/sec)   p_kst 8.776167e-01   p_cons 2.820000e-02   p_joint 1.487167e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A2.3_2228_60000_0.87762_0.0282_0.14872.png
                gene_name: SLC26A2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 60 percent done.
SLC27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
SLC27A1   10000 perm   2 sec   (6606 perm/sec)   p_kst 1.667000e-01   p_cons 1.214000e-01   p_joint 1.269000e-01

Joint ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
Cons ci ratio: 7.518557e-02	ci left: 1.151334e-01	ci right 1.241775e-01	k: 2392	n:20000
KS ci ratio: 5.983092e-02	ci left: 1.713868e-01	ci right 1.820073e-01	k: 3533	n:20000
SLC27A1   20000 perm   3 sec   (5854 perm/sec)   p_kst 1.766500e-01   p_cons 1.196000e-01   p_joint 1.330000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A1.3_1989_20000_0.17665_0.1196_0.133.png
                gene_name: SLC27A1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 62 percent done.
SLC27A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
Cons ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
KS ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
SLC27A2   10000 perm   1 sec   (6762 perm/sec)   p_kst 2.692000e-01   p_cons 8.166000e-01   p_joint 4.419000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A2.3_1903_10000_0.2692_0.8166_0.4419.png
                gene_name: SLC27A2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 64 percent done.
SLC27A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
KS ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
SLC27A4   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.930000e-01   p_cons 9.020000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC27A4.3_1980_10000_0.593_0.902_1.png
                gene_name: SLC27A4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SLC22A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
SLC22A10   10000 perm   1 sec   (6886 perm/sec)   p_kst 1.663000e-01   p_cons 9.200000e-03   p_joint 1.210000e-02

Joint ci ratio: 1.227707e-01	ci left: 4.551508e-02	ci right 5.151706e-02	k: 969	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 6.138766e-02	ci left: 1.641260e-01	ci right 1.745703e-01	k: 3386	n:20000
SLC22A10   20000 perm   3 sec   (6188 perm/sec)   p_kst 1.693000e-01   p_cons 1.220000e-02   p_joint 4.845000e-02

Joint ci ratio: 1.156222e-01	ci left: 3.476265e-02	ci right 3.906096e-02	k: 1106	n:30000
Cons ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
KS ci ratio: 5.040098e-02	ci left: 1.635540e-01	ci right 1.720437e-01	k: 5033	n:30000
SLC22A10   30000 perm   5 sec   (5894 perm/sec)   p_kst 1.677667e-01   p_cons 1.183333e-02   p_joint 3.686667e-02

Joint ci ratio: 1.093529e-01	ci left: 2.942048e-02	ci right 3.284804e-02	k: 1244	n:40000
Cons ci ratio: 1.778438e-01	ci left: 1.093208e-02	ci right 1.308963e-02	k: 479	n:40000
KS ci ratio: 4.359792e-02	ci left: 1.644470e-01	ci right 1.718013e-01	k: 6724	n:40000
SLC22A10   40000 perm   7 sec   (5696 perm/sec)   p_kst 1.681000e-01   p_cons 1.197500e-02   p_joint 3.110000e-02

Joint ci ratio: 1.235361e-01	ci left: 1.851926e-02	ci right 2.097695e-02	k: 986	n:50000
Cons ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
KS ci ratio: 3.881014e-02	ci left: 1.661611e-01	ci right 1.727574e-01	k: 8472	n:50000
SLC22A10   50000 perm   9 sec   (5553 perm/sec)   p_kst 1.694400e-01   p_cons 9.160000e-03   p_joint 1.972000e-02

Joint ci ratio: 1.179248e-01	ci left: 1.701595e-02	ci right 1.916436e-02	k: 1084	n:60000
Cons ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
KS ci ratio: 3.525888e-02	ci left: 1.677964e-01	ci right 1.738355e-01	k: 10248	n:60000
SLC22A10   60000 perm   11 sec   (5423 perm/sec)   p_kst 1.708000e-01   p_cons 9.466667e-03   p_joint 1.806667e-02

Joint ci ratio: 6.522196e-02	ci left: 4.746869e-02	ci right 5.068310e-02	k: 3434	n:70000
Cons ci ratio: 1.511715e-01	ci left: 8.794644e-03	ci right 1.024645e-02	k: 665	n:70000
KS ci ratio: 3.266674e-02	ci left: 1.678200e-01	ci right 1.734074e-01	k: 11942	n:70000
SLC22A10   70000 perm   13 sec   (5301 perm/sec)   p_kst 1.706000e-01   p_cons 9.500000e-03   p_joint 4.905714e-02

Joint ci ratio: 8.916906e-02	ci left: 2.253470e-02	ci right 2.465004e-02	k: 1886	n:80000
Cons ci ratio: 1.414215e-01	ci left: 8.839394e-03	ci right 1.019653e-02	k: 760	n:80000
KS ci ratio: 3.058552e-02	ci left: 1.677382e-01	ci right 1.729607e-01	k: 13627	n:80000
SLC22A10   80000 perm   15 sec   (5194 perm/sec)   p_kst 1.703375e-01   p_cons 9.500000e-03   p_joint 2.357500e-02

Joint ci ratio: 1.044032e-01	ci left: 1.461643e-02	ci right 1.623724e-02	k: 1387	n:90000
Cons ci ratio: 1.324867e-01	ci left: 8.994739e-03	ci right 1.028161e-02	k: 866	n:90000
KS ci ratio: 2.872853e-02	ci left: 1.689430e-01	ci right 1.738782e-01	k: 15426	n:90000
SLC22A10   90000 perm   18 sec   (5094 perm/sec)   p_kst 1.714000e-01   p_cons 9.622222e-03   p_joint 1.541111e-02

Joint ci ratio: 7.838356e-02	ci left: 2.344274e-02	ci right 2.536498e-02	k: 2439	n:100000
Cons ci ratio: 1.253163e-01	ci left: 9.082415e-03	ci right 1.030628e-02	k: 968	n:100000
KS ci ratio: 2.727072e-02	ci left: 1.688997e-01	ci right 1.735794e-01	k: 17123	n:100000
SLC22A10   100000 perm   20 sec   (4996 perm/sec)   p_kst 1.712300e-01   p_cons 9.680000e-03   p_joint 2.439000e-02

Joint ci ratio: 9.413936e-02	ci left: 1.478712e-02	ci right 1.625676e-02	k: 1706	n:110000
Cons ci ratio: 1.198769e-01	ci left: 9.049828e-03	ci right 1.021261e-02	k: 1058	n:110000
KS ci ratio: 2.600278e-02	ci left: 1.689962e-01	ci right 1.734575e-01	k: 18834	n:110000
SLC22A10   110000 perm   22 sec   (4897 perm/sec)   p_kst 1.712182e-01   p_cons 9.618182e-03   p_joint 1.550909e-02

Joint ci ratio: 8.967248e-02	ci left: 1.497161e-02	ci right 1.638527e-02	k: 1880	n:120000
Cons ci ratio: 1.141897e-01	ci left: 9.169369e-03	ci right 1.028785e-02	k: 1166	n:120000
KS ci ratio: 2.487334e-02	ci left: 1.693462e-01	ci right 1.736197e-01	k: 20577	n:120000
SLC22A10   120000 perm   25 sec   (4811 perm/sec)   p_kst 1.714750e-01   p_cons 9.716667e-03   p_joint 1.566667e-02

Joint ci ratio: 8.669096e-02	ci left: 1.481289e-02	ci right 1.616270e-02	k: 2012	n:130000
Cons ci ratio: 1.106529e-01	ci left: 9.032175e-03	ci right 1.009757e-02	k: 1242	n:130000
KS ci ratio: 2.390649e-02	ci left: 1.693243e-01	ci right 1.734288e-01	k: 22278	n:130000
SLC22A10   130000 perm   27 sec   (4732 perm/sec)   p_kst 1.713692e-01   p_cons 9.553846e-03   p_joint 1.547692e-02

Joint ci ratio: 8.819570e-02	ci left: 1.330023e-02	ci right 1.453431e-02	k: 1947	n:140000
Cons ci ratio: 1.067331e-01	ci left: 9.033248e-03	ci right 1.005865e-02	k: 1335	n:140000
KS ci ratio: 2.300550e-02	ci left: 1.697847e-01	ci right 1.737432e-01	k: 24046	n:140000
SLC22A10   140000 perm   30 sec   (4654 perm/sec)   p_kst 1.717571e-01   p_cons 9.535714e-03   p_joint 1.390714e-02

Joint ci ratio: 8.520812e-02	ci left: 1.332013e-02	ci right 1.451210e-02	k: 2086	n:150000
Cons ci ratio: 1.031660e-01	ci left: 9.041252e-03	ci right 1.003118e-02	k: 1429	n:150000
KS ci ratio: 2.225340e-02	ci left: 1.694959e-01	ci right 1.733168e-01	k: 25710	n:150000
SLC22A10   150000 perm   33 sec   (4580 perm/sec)   p_kst 1.714000e-01   p_cons 9.526667e-03   p_joint 1.390667e-02

Joint ci ratio: 8.244860e-02	ci left: 1.335653e-02	ci right 1.451119e-02	k: 2228	n:160000
Cons ci ratio: 9.980202e-02	ci left: 9.073136e-03	ci right 1.003226e-02	k: 1527	n:160000
KS ci ratio: 2.158909e-02	ci left: 1.690024e-01	ci right 1.726970e-01	k: 27335	n:160000
SLC22A10   160000 perm   35 sec   (4509 perm/sec)   p_kst 1.708437e-01   p_cons 9.543750e-03   p_joint 1.392500e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A10.2_1666_160000_0.17084_0.0095438_0.013925.png
                gene_name: SLC22A10
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0095 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 67 percent done.
SLC22A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
SLC22A12   10000 perm   1 sec   (7146 perm/sec)   p_kst 3.734000e-01   p_cons 1.481000e-01   p_joint 2.200000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A12.2_1702_10000_0.3734_0.1481_0.22.png
                gene_name: SLC22A12
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 69 percent done.
SLC22A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
Cons ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
KS ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
SLC22A13   10000 perm   1 sec   (7139 perm/sec)   p_kst 7.245000e-01   p_cons 4.463000e-01   p_joint 9.388000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A13.2_1696_10000_0.7245_0.4463_0.9388.png
                gene_name: SLC22A13
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 71 percent done.
SLC22A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
Cons ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
KS ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
SLC22A2   10000 perm   1 sec   (7133 perm/sec)   p_kst 8.256000e-01   p_cons 1.122000e-01   p_joint 3.494000e-01

Joint ci ratio: 1.539496e-02	ci left: 7.583041e-01	ci right 7.701190e-01	k: 15285	n:20000
Cons ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
KS ci ratio: 1.274019e-02	ci left: 8.202689e-01	ci right 8.308362e-01	k: 16512	n:20000
SLC22A2   20000 perm   3 sec   (6294 perm/sec)   p_kst 8.256000e-01   p_cons 1.105000e-01   p_joint 7.642500e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A2.2_1712_20000_0.8256_0.1105_0.76425.png
                gene_name: SLC22A2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 73 percent done.
SLC22A23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
Cons ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
SLC22A23   10000 perm   1 sec   (6801 perm/sec)   p_kst 3.000000e-02   p_cons 9.670000e-02   p_joint 3.229000e-01

Joint ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
Cons ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
SLC22A23   20000 perm   3 sec   (5993 perm/sec)   p_kst 3.020000e-02   p_cons 8.630000e-02   p_joint 2.300000e-02

Joint ci ratio: 1.580197e-01	ci left: 1.850980e-02	ci right 2.171742e-02	k: 602	n:30000
Cons ci ratio: 7.379646e-02	ci left: 8.278542e-02	ci right 8.916169e-02	k: 2578	n:30000
KS ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
SLC22A23   30000 perm   5 sec   (5719 perm/sec)   p_kst 3.026667e-02   p_cons 8.593333e-02   p_joint 2.006667e-02

Joint ci ratio: 1.526182e-01	ci left: 1.498555e-02	ci right 1.748540e-02	k: 648	n:40000
Cons ci ratio: 6.449294e-02	ci left: 8.181668e-02	ci right 8.729381e-02	k: 3381	n:40000
KS ci ratio: 1.110205e-01	ci left: 2.854456e-02	ci right 3.192409e-02	k: 1208	n:40000
SLC22A23   40000 perm   7 sec   (5524 perm/sec)   p_kst 3.020000e-02   p_cons 8.452500e-02   p_joint 1.620000e-02

Joint ci ratio: 1.170473e-01	ci left: 2.065439e-02	ci right 2.324153e-02	k: 1096	n:50000
Cons ci ratio: 5.792039e-02	ci left: 8.148415e-02	ci right 8.636428e-02	k: 4195	n:50000
KS ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
SLC22A23   50000 perm   9 sec   (5371 perm/sec)   p_kst 3.026000e-02   p_cons 8.390000e-02   p_joint 2.192000e-02

Joint ci ratio: 1.058828e-01	ci left: 2.114957e-02	ci right 2.353028e-02	k: 1339	n:60000
Cons ci ratio: 5.300733e-02	ci left: 8.131480e-02	ci right 8.575891e-02	k: 5011	n:60000
KS ci ratio: 9.014967e-02	ci left: 2.917109e-02	ci right 3.194123e-02	k: 1832	n:60000
SLC22A23   60000 perm   11 sec   (5243 perm/sec)   p_kst 3.053333e-02   p_cons 8.351667e-02   p_joint 2.231667e-02

Joint ci ratio: 9.601654e-02	ci left: 2.213932e-02	ci right 2.438615e-02	k: 1627	n:70000
Cons ci ratio: 4.891271e-02	ci left: 8.198350e-02	ci right 8.610820e-02	k: 5882	n:70000
KS ci ratio: 8.313223e-02	ci left: 2.950442e-02	ci right 3.207752e-02	k: 2154	n:70000
SLC22A23   70000 perm   14 sec   (5134 perm/sec)   p_kst 3.077143e-02   p_cons 8.402857e-02   p_joint 2.324286e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A23.2_2101_70000_0.030771_0.084029_0.023243.png
                gene_name: SLC22A23
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 75 percent done.
SLC22A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
KS ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
SLC22A25   10000 perm   1 sec   (7327 perm/sec)   p_kst 9.659000e-01   p_cons 2.600000e-02   p_joint 6.890000e-02

Joint ci ratio: 1.102495e-01	ci left: 5.616335e-02	ci right 6.276545e-02	k: 1188	n:20000
Cons ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
KS ci ratio: 5.223264e-03	ci left: 9.631358e-01	ci right 9.682277e-01	k: 19315	n:20000
SLC22A25   20000 perm   3 sec   (6466 perm/sec)   p_kst 9.657500e-01   p_cons 2.725000e-02   p_joint 5.940000e-02

Joint ci ratio: 7.567381e-02	ci left: 7.898476e-02	ci right 8.522979e-02	k: 2462	n:30000
Cons ci ratio: 1.324542e-01	ci left: 2.648489e-02	ci right 3.027385e-02	k: 850	n:30000
KS ci ratio: 4.202326e-03	ci left: 9.646073e-01	ci right 9.687016e-01	k: 29001	n:30000
SLC22A25   30000 perm   5 sec   (6146 perm/sec)   p_kst 9.667000e-01   p_cons 2.833333e-02   p_joint 8.206667e-02

Joint ci ratio: 7.464375e-02	ci left: 6.208737e-02	ci right 6.692609e-02	k: 2579	n:40000
Cons ci ratio: 1.172137e-01	ci left: 2.560351e-02	ci right 2.881562e-02	k: 1087	n:40000
KS ci ratio: 3.661459e-03	ci left: 9.644849e-01	ci right 9.680470e-01	k: 38652	n:40000
SLC22A25   40000 perm   7 sec   (5937 perm/sec)   p_kst 9.663000e-01   p_cons 2.717500e-02   p_joint 6.447500e-02

Joint ci ratio: 9.159060e-02	ci left: 3.371907e-02	ci right 3.697516e-02	k: 1766	n:50000
Cons ci ratio: 1.054386e-01	ci left: 2.547990e-02	ci right 2.833539e-02	k: 1344	n:50000
KS ci ratio: 3.248477e-03	ci left: 9.652127e-01	ci right 9.683728e-01	k: 48341	n:50000
SLC22A25   50000 perm   9 sec   (5772 perm/sec)   p_kst 9.668200e-01   p_cons 2.688000e-02   p_joint 3.532000e-02

Joint ci ratio: 7.988460e-02	ci left: 3.703992e-02	ci right 4.013825e-02	k: 2314	n:60000
Cons ci ratio: 9.640553e-02	ci left: 2.552236e-02	ci right 2.812368e-02	k: 1608	n:60000
KS ci ratio: 2.943839e-03	ci left: 9.658288e-01	ci right 9.686925e-01	k: 58037	n:60000
SLC22A25   60000 perm   11 sec   (5618 perm/sec)   p_kst 9.672833e-01   p_cons 2.680000e-02   p_joint 3.856667e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A25.2_1680_60000_0.96728_0.0268_0.038567.png
                gene_name: SLC22A25
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 76 percent done.
SLC22A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.918087e-02	ci left: 6.339212e-01	ci right 6.527952e-01	k: 6434	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
SLC22A3   10000 perm   1 sec   (7019 perm/sec)   p_kst 4.905000e-01   p_cons 8.836000e-01   p_joint 6.434000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A3.2_1715_10000_0.4905_0.8836_0.6434.png
                gene_name: SLC22A3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 78 percent done.
SLC22A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
Cons ci ratio: 2.112780e-02	ci left: 7.665848e-01	ci right 7.830548e-01	k: 7749	n:10000
KS ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
SLC22A9   10000 perm   1 sec   (7370 perm/sec)   p_kst 3.448000e-01   p_cons 7.749000e-01   p_joint 9.442000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A9.2_1702_10000_0.3448_0.7749_0.9442.png
                gene_name: SLC22A9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 80 percent done.
SLC24A1
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 82 percent done.
SLC25A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
KS ci ratio: 3.724407e-02	ci left: 5.156567e-01	ci right 5.353284e-01	k: 5255	n:10000
SLC25A11   10000 perm   1 sec   (7514 perm/sec)   p_kst 5.255000e-01   p_cons 6.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A11.2_977_10000_0.5255_0.6642_1.png
                gene_name: SLC25A11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SLC25A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
KS ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
SLC25A2   10000 perm   1 sec   (7540 perm/sec)   p_kst 8.331000e-01   p_cons 4.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A2.2_910_10000_0.8331_0.4028_1.png
                gene_name: SLC25A2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
SLC25A20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
Cons ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
KS ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
SLC25A20   10000 perm   1 sec   (7510 perm/sec)   p_kst 4.541000e-01   p_cons 2.949000e-01   p_joint 5.751000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A20.2_942_10000_0.4541_0.2949_0.5751.png
                gene_name: SLC25A20
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 87 percent done.
SLC25A24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
Cons ci ratio: 1.390393e-02	ci left: 8.819628e-01	ci right 8.944101e-01	k: 8883	n:10000
KS ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
SLC25A24   10000 perm   1 sec   (7148 perm/sec)   p_kst 2.227000e-01   p_cons 8.883000e-01   p_joint 9.234000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A24.2_1604_10000_0.2227_0.8883_0.9234.png
                gene_name: SLC25A24
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
SLC25A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
Cons ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
SLC25A3   10000 perm   1 sec   (7347 perm/sec)   p_kst 2.824000e-01   p_cons 4.450000e-01   p_joint 8.815000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A3.2_1243_10000_0.2824_0.445_0.8815.png
                gene_name: SLC25A3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 91 percent done.
SLC25A31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.362769e-02	ci left: 7.247173e-01	ci right 7.421466e-01	k: 7335	n:10000
KS ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
SLC25A31   10000 perm   1 sec   (7550 perm/sec)   p_kst 9.485000e-01   p_cons 7.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A31.2_972_10000_0.9485_0.7335_1.png
                gene_name: SLC25A31
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SLC25A38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
Cons ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
KS ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
SLC25A38   10000 perm   1 sec   (7597 perm/sec)   p_kst 6.363000e-01   p_cons 5.190000e-01   p_joint 9.304000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A38.2_943_10000_0.6363_0.519_0.9304.png
                gene_name: SLC25A38
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
SLC25A41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.316462e-02	ci left: 8.926197e-01	ci right 9.045470e-01	k: 8987	n:10000
Cons ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
KS ci ratio: 3.214337e-02	ci left: 5.882125e-01	ci right 6.075305e-01	k: 5979	n:10000
SLC25A41   10000 perm   1 sec   (7857 perm/sec)   p_kst 5.979000e-01   p_cons 8.670000e-01   p_joint 8.987000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A41.2_1141_10000_0.5979_0.867_0.8987.png
                gene_name: SLC25A41
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
SLC25A45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
Cons ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
KS ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
SLC25A45   10000 perm   1 sec   (7631 perm/sec)   p_kst 6.341000e-01   p_cons 1.947000e-01   p_joint 2.139000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A45.2_891_10000_0.6341_0.1947_0.2139.png
                gene_name: SLC25A45
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 98 percent done.
SLC25A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.632250e-02	ci left: 6.800247e-01	ci right 6.982650e-01	k: 6892	n:10000
Cons ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
KS ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
SLC25A5   10000 perm   1 sec   (7645 perm/sec)   p_kst 3.834000e-01   p_cons 2.472000e-01   p_joint 6.892000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A5.2_913_10000_0.3834_0.2472_0.6892.png
                gene_name: SLC25A5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000159
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 159 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 4422489: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000160> was used as the working directory.
Started at Wed Oct 24 18:08:06 2012
Results reported at Wed Oct 24 18:18:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000160.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000160.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 160  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000160.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    684.52 sec.
    Max Memory :      5324 MB
    Max Swap   :      7677 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
160
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 160
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 160: processing genes 14386 - 14475
Calculating significance of each gene.
Using projection method.
14386	SLC28A1	1
14387	SLC28A2	1
14388	SLC28A3	3.737299e-01
14389	SLC29A1	8.271437e-01
14390	SLC29A2	1
14391	SLC29A3	1
14392	SLC29A4	6.262235e-01
14393	SLC2A1	1
14394	SLC2A10	2.111418e-02
14395	SLC2A11	1
14396	SLC2A12	7.924329e-01
14397	SLC2A13	4.935882e-01
14398	SLC2A14	8.999771e-01
14399	SLC2A2	6.897522e-01
14400	SLC2A3	6.659722e-02
14401	SLC2A4	1
14402	SLC2A4RG	5.130760e-01
14403	SLC2A5	1
14404	SLC2A6	8.573759e-01
14405	SLC2A7	7.530561e-01
14406	SLC2A8	6.640695e-01
14407	SLC2A9	8.112572e-01
14408	SLC30A1	1
14409	SLC30A10	5.136220e-02
14410	SLC30A2	4.292380e-01
14411	SLC30A3	8.807723e-01
14412	SLC30A4	1
14413	SLC30A5	9.476353e-01
14414	SLC30A6	1
14415	SLC30A7	9.094256e-01
14416	SLC30A8	8.436784e-01
14417	SLC30A9	6.727671e-01
14418	SLC31A1	1
14419	SLC31A2	1
14420	SLC32A1	4.117391e-03
14421	SLC33A1	8.244533e-01
14422	SLC34A1	7.509367e-01
14423	SLC34A2	3.895223e-02
14424	SLC34A3	1
14425	SLC35A1	1
14426	SLC35A2	5.554525e-01
14427	SLC35A3	8.502094e-01
14428	SLC35A4	1
14429	SLC35A5	5.025393e-01
14430	SLC35B1	3.550601e-01
14431	SLC35B2	1
14432	SLC35B3	3.069455e-01
14433	SLC35B4	7.697566e-01
14434	SLC35C1	1
14435	SLC35C2	1
14436	SLC35D1	4.970205e-01
14437	SLC35D2	5.074509e-01
14438	SLC35D3	8.261321e-01
14439	SLC35E1	1
14440	SLC35E2	4.090780e-01
14441	SLC35E3	2.801047e-01
14442	SLC35E4	7.352688e-01
14443	SLC35F1	4.541277e-05
14444	SLC35F2	1
14445	SLC35F3	2.978139e-01
14446	SLC35F4	2.993577e-01
14447	SLC35F5	8.736270e-01
14448	SLC36A1	1.431067e-01
14449	SLC36A2	5.074294e-01
14450	SLC36A3	8.990033e-01
14451	SLC36A4	7.480780e-01
14452	SLC37A1	9.388278e-01
In gene SLC37A2 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 1589    n = 1	mu =   9.71e-07
14453	SLC37A2	2.756073e-01
14454	SLC37A3	7.826609e-01
14455	SLC37A4	1
14456	SLC38A1	5.258185e-01
14457	SLC38A10	9.841665e-01
14458	SLC38A11	2.722765e-01
14459	SLC38A2	7.477763e-01
14460	SLC38A3	1
14461	SLC38A4	5.881795e-01
14462	SLC38A5	1
14463	SLC38A6	4.237655e-01
14464	SLC38A7	7.494882e-01
14465	SLC38A8	3.401814e-01
14466	SLC38A9	8.792004e-01
14467	SLC39A1	7.334615e-01
14468	SLC39A10	9.427487e-01
14469	SLC39A11	3.172914e-01
14470	SLC39A12	3.208256e-03
14471	SLC39A13	1
14472	SLC39A14	7.454581e-01
14473	SLC39A2	7.139278e-01
14474	SLC39A3	7.399640e-01
14475	SLC39A4	9.004736e-01
Done

Running MutSig 2:
Scatter job 160: processing genes 14386 - 14475
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC39A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
KS ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
SLC39A12   10000 perm   2 sec   (4710 perm/sec)   p_kst 9.299000e-01   p_cons 6.301000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC39A12.19_2124_10000_0.9299_0.6301_1.png
                gene_name: SLC39A12
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SLC35F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
SLC35F1   10000 perm   2 sec   (5040 perm/sec)   p_kst 6.764000e-01   p_cons 3.576000e-01   p_joint 6.854000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F1.11_1259_10000_0.6764_0.3576_0.6854.png
                gene_name: SLC35F1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 4 percent done.
SLC2A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
Cons ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
KS ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
SLC2A10   10000 perm   2 sec   (5012 perm/sec)   p_kst 1.615000e-01   p_cons 5.930000e-01   p_joint 3.632000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A10.10_1646_10000_0.1615_0.593_0.3632.png
                gene_name: SLC2A10
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 6 percent done.
SLC32A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 1.146988e-02	ci left: 9.157457e-01	ci right 9.264074e-01	k: 9212	n:10000
SLC32A1   10000 perm   2 sec   (5296 perm/sec)   p_kst 9.212000e-01   p_cons 1.164000e-01   p_joint 3.178000e-01

Joint ci ratio: 3.772852e-02	ci left: 3.438846e-01	ci right 3.571589e-01	k: 7010	n:20000
Cons ci ratio: 7.636853e-02	ci left: 1.119372e-01	ci right 1.208747e-01	k: 2327	n:20000
KS ci ratio: 8.250188e-03	ci left: 9.147752e-01	ci right 9.224026e-01	k: 18373	n:20000
SLC32A1   20000 perm   4 sec   (4761 perm/sec)   p_kst 9.186500e-01   p_cons 1.163500e-01   p_joint 3.505000e-01

Outputting figure to mutsig2_images.part000000000160/SLC32A1.9_1586_20000_0.91865_0.11635_0.3505.png
                gene_name: SLC32A1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 8 percent done.
SLC34A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
Cons ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
KS ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
SLC34A2   10000 perm   2 sec   (4965 perm/sec)   p_kst 1.070000e-01   p_cons 2.097000e-01   p_joint 1.768000e-01

Joint ci ratio: 5.522086e-02	ci left: 1.956627e-01	ci right 2.068243e-01	k: 4024	n:20000
Cons ci ratio: 5.454306e-02	ci left: 1.996212e-01	ci right 2.108646e-01	k: 4104	n:20000
KS ci ratio: 8.001216e-02	ci left: 1.028466e-01	ci right 1.114680e-01	k: 2142	n:20000
SLC34A2   20000 perm   5 sec   (4334 perm/sec)   p_kst 1.071000e-01   p_cons 2.052000e-01   p_joint 2.012000e-01

Outputting figure to mutsig2_images.part000000000160/SLC34A2.9_2121_20000_0.1071_0.2052_0.2012.png
                gene_name: SLC34A2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
SLC28A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
SLC28A3   10000 perm   2 sec   (5243 perm/sec)   p_kst 2.180000e-02   p_cons 1.521000e-01   p_joint 6.640000e-02

Joint ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
Cons ci ratio: 6.707764e-02	ci left: 1.409358e-01	ci right 1.507674e-01	k: 2916	n:20000
KS ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
SLC28A3   20000 perm   4 sec   (4732 perm/sec)   p_kst 2.170000e-02   p_cons 1.458000e-01   p_joint 4.145000e-02

Joint ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
Cons ci ratio: 5.516439e-02	ci left: 1.400780e-01	ci right 1.480577e-01	k: 4321	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
SLC28A3   30000 perm   7 sec   (4391 perm/sec)   p_kst 2.090000e-02   p_cons 1.440333e-01   p_joint 3.430000e-02

Joint ci ratio: 9.781591e-02	ci left: 3.670881e-02	ci right 4.050854e-02	k: 1543	n:40000
Cons ci ratio: 4.753164e-02	ci left: 1.418598e-01	ci right 1.487917e-01	k: 5812	n:40000
KS ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
SLC28A3   40000 perm   9 sec   (4299 perm/sec)   p_kst 2.105000e-02   p_cons 1.453000e-01   p_joint 3.857500e-02

Joint ci ratio: 9.271143e-02	ci left: 3.291733e-02	ci right 3.613700e-02	k: 1725	n:50000
Cons ci ratio: 4.233403e-02	ci left: 1.432724e-01	ci right 1.494887e-01	k: 7318	n:50000
KS ci ratio: 1.184345e-01	ci left: 2.016881e-02	ci right 2.272717e-02	k: 1071	n:50000
SLC28A3   50000 perm   12 sec   (4213 perm/sec)   p_kst 2.142000e-02   p_cons 1.463600e-01   p_joint 3.450000e-02

Joint ci ratio: 8.463793e-02	ci left: 3.305386e-02	ci right 3.599138e-02	k: 2070	n:60000
Cons ci ratio: 3.861671e-02	ci left: 1.437290e-01	ci right 1.494052e-01	k: 8793	n:60000
KS ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
SLC28A3   60000 perm   15 sec   (4136 perm/sec)   p_kst 2.160000e-02   p_cons 1.465500e-01   p_joint 3.450000e-02

Joint ci ratio: 8.252181e-02	ci left: 2.993838e-02	ci right 3.252924e-02	k: 2185	n:70000
Cons ci ratio: 3.586007e-02	ci left: 1.431933e-01	ci right 1.484361e-01	k: 10206	n:70000
KS ci ratio: 1.008816e-01	ci left: 2.004809e-02	ci right 2.219187e-02	k: 1477	n:70000
SLC28A3   70000 perm   17 sec   (4071 perm/sec)   p_kst 2.110000e-02   p_cons 1.458000e-01   p_joint 3.121429e-02

Joint ci ratio: 8.363681e-02	ci left: 2.560611e-02	ci right 2.785339e-02	k: 2137	n:80000
Cons ci ratio: 3.239197e-02	ci left: 1.522253e-01	ci right 1.572498e-01	k: 12378	n:80000
KS ci ratio: 9.500425e-02	ci left: 1.984663e-02	ci right 2.183833e-02	k: 1666	n:80000
SLC28A3   80000 perm   20 sec   (4008 perm/sec)   p_kst 2.082500e-02   p_cons 1.547250e-01   p_joint 2.671250e-02

Outputting figure to mutsig2_images.part000000000160/SLC28A3.7_2148_80000_0.020825_0.15473_0.026713.png
                gene_name: SLC28A3
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 11 percent done.
SLC30A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
Cons ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
KS ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
SLC30A10   10000 perm   2 sec   (4995 perm/sec)   p_kst 1.619000e-01   p_cons 1.643000e-01   p_joint 1.100000e-01

Joint ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
Cons ci ratio: 6.329847e-02	ci left: 1.557829e-01	ci right 1.660159e-01	k: 3217	n:20000
KS ci ratio: 6.171699e-02	ci left: 1.626446e-01	ci right 1.730522e-01	k: 3356	n:20000
SLC30A10   20000 perm   4 sec   (4612 perm/sec)   p_kst 1.678000e-01   p_cons 1.608500e-01   p_joint 1.228500e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A10.7_1474_20000_0.1678_0.16085_0.12285.png
                gene_name: SLC30A10
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 13 percent done.
SLC2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
Cons ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
KS ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
SLC2A3   10000 perm   2 sec   (5948 perm/sec)   p_kst 1.002000e-01   p_cons 4.836000e-01   p_joint 1.482000e-01

Joint ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
Cons ci ratio: 2.985515e-02	ci left: 4.559704e-01	ci right 4.698404e-01	k: 9258	n:20000
KS ci ratio: 8.195287e-02	ci left: 9.842765e-02	ci right 1.068883e-01	k: 2052	n:20000
SLC2A3   20000 perm   4 sec   (5239 perm/sec)   p_kst 1.026000e-01   p_cons 4.629000e-01   p_joint 1.276000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A3.6_1531_20000_0.1026_0.4629_0.1276.png
                gene_name: SLC2A3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
SLC35F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
Cons ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
KS ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
SLC35F4   10000 perm   2 sec   (5244 perm/sec)   p_kst 9.100000e-01   p_cons 2.417000e-01   p_joint 7.099000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F4.6_1598_10000_0.91_0.2417_0.7099.png
                gene_name: SLC35F4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 17 percent done.
SLC35F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
KS ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
SLC35F3   10000 perm   2 sec   (6346 perm/sec)   p_kst 1.588000e-01   p_cons 2.019000e-01   p_joint 1.097000e-01

Joint ci ratio: 5.913098e-02	ci left: 1.747962e-01	ci right 1.854970e-01	k: 3602	n:20000
Cons ci ratio: 5.499856e-02	ci left: 1.969491e-01	ci right 2.081375e-01	k: 4050	n:20000
KS ci ratio: 6.463191e-02	ci left: 1.503058e-01	ci right 1.603947e-01	k: 3106	n:20000
SLC35F3   20000 perm   4 sec   (5576 perm/sec)   p_kst 1.553000e-01   p_cons 2.025000e-01   p_joint 1.801000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F3.5_1505_20000_0.1553_0.2025_0.1801.png
                gene_name: SLC35F3
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 19 percent done.
SLC36A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
Cons ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
SLC36A1   10000 perm   2 sec   (5587 perm/sec)   p_kst 1.724000e-01   p_cons 3.066000e-01   p_joint 2.666000e-01

Outputting figure to mutsig2_images.part000000000160/SLC36A1.5_1471_10000_0.1724_0.3066_0.2666.png
                gene_name: SLC36A1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 21 percent done.
SLC37A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
Cons ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
KS ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
SLC37A2   10000 perm   2 sec   (5570 perm/sec)   p_kst 3.948000e-01   p_cons 6.900000e-03   p_joint 1.540000e-02

Joint ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
Cons ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
KS ci ratio: 3.497050e-02	ci left: 3.790457e-01	ci right 3.925876e-01	k: 7716	n:20000
SLC37A2   20000 perm   4 sec   (4957 perm/sec)   p_kst 3.858000e-01   p_cons 5.300000e-03   p_joint 4.045000e-02

Joint ci ratio: 1.323742e-01	ci left: 2.651715e-02	ci right 3.030825e-02	k: 851	n:30000
Cons ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
KS ci ratio: 2.867914e-02	ci left: 3.782253e-01	ci right 3.892639e-01	k: 11512	n:30000
SLC37A2   30000 perm   6 sec   (4717 perm/sec)   p_kst 3.837333e-01   p_cons 5.766667e-03   p_joint 2.836667e-02

Joint ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
Cons ci ratio: 2.432572e-01	ci left: 5.665515e-03	ci right 7.257410e-03	k: 257	n:40000
KS ci ratio: 2.487978e-02	ci left: 3.781574e-01	ci right 3.877096e-01	k: 15317	n:40000
SLC37A2   40000 perm   9 sec   (4569 perm/sec)   p_kst 3.829250e-01   p_cons 6.425000e-03   p_joint 3.892500e-02

Joint ci ratio: 9.315959e-02	ci left: 3.260453e-02	ci right 3.580985e-02	k: 1709	n:50000
Cons ci ratio: 2.177464e-01	ci left: 5.738724e-03	ci right 7.159492e-03	k: 321	n:50000
KS ci ratio: 2.230738e-02	ci left: 3.775186e-01	ci right 3.860551e-01	k: 19089	n:50000
SLC37A2   50000 perm   11 sec   (4447 perm/sec)   p_kst 3.817800e-01   p_cons 6.420000e-03   p_joint 3.418000e-02

Joint ci ratio: 7.746276e-02	ci left: 3.934549e-02	ci right 4.253244e-02	k: 2455	n:60000
Cons ci ratio: 2.004523e-01	ci left: 5.698378e-03	ci right 6.983408e-03	k: 379	n:60000
KS ci ratio: 1.998715e-02	ci left: 3.867265e-01	ci right 3.945508e-01	k: 23438	n:60000
SLC37A2   60000 perm   14 sec   (4351 perm/sec)   p_kst 3.906333e-01   p_cons 6.316667e-03   p_joint 4.091667e-02

Joint ci ratio: 7.812823e-02	ci left: 3.335637e-02	ci right 3.608237e-02	k: 2429	n:70000
Cons ci ratio: 1.860764e-01	ci left: 5.713638e-03	ci right 6.899273e-03	k: 440	n:70000
KS ci ratio: 1.850534e-02	ci left: 3.869975e-01	ci right 3.942402e-01	k: 27343	n:70000
SLC37A2   70000 perm   16 sec   (4264 perm/sec)   p_kst 3.906143e-01   p_cons 6.285714e-03   p_joint 3.470000e-02

Joint ci ratio: 7.253140e-02	ci left: 3.394590e-02	ci right 3.651295e-02	k: 2817	n:80000
Cons ci ratio: 1.738852e-01	ci left: 5.763437e-03	ci right 6.872822e-03	k: 504	n:80000
KS ci ratio: 1.732665e-02	ci left: 3.867802e-01	ci right 3.935528e-01	k: 31213	n:80000
SLC37A2   80000 perm   19 sec   (4185 perm/sec)   p_kst 3.901625e-01   p_cons 6.300000e-03   p_joint 3.521250e-02

Joint ci ratio: 7.164813e-02	ci left: 3.103439e-02	ci right 3.335145e-02	k: 2896	n:90000
Cons ci ratio: 1.635248e-01	ci left: 5.825462e-03	ci right 6.873405e-03	k: 570	n:90000
KS ci ratio: 1.633029e-02	ci left: 3.871332e-01	ci right 3.935183e-01	k: 35129	n:90000
SLC37A2   90000 perm   22 sec   (4119 perm/sec)   p_kst 3.903222e-01   p_cons 6.333333e-03   p_joint 3.217778e-02

Joint ci ratio: 7.136234e-02	ci left: 2.824376e-02	ci right 3.034366e-02	k: 2928	n:100000
Cons ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
KS ci ratio: 1.547319e-02	ci left: 3.878839e-01	ci right 3.939424e-01	k: 39091	n:100000
SLC37A2   100000 perm   25 sec   (4060 perm/sec)   p_kst 3.909100e-01   p_cons 6.350000e-03   p_joint 2.928000e-02

Joint ci ratio: 6.976558e-02	ci left: 2.692576e-02	ci right 2.888105e-02	k: 3068	n:110000
Cons ci ratio: 1.481157e-01	ci left: 5.858447e-03	ci right 6.804228e-03	k: 695	n:110000
KS ci ratio: 1.476331e-02	ci left: 3.876971e-01	ci right 3.934724e-01	k: 42964	n:110000
SLC37A2   110000 perm   28 sec   (3998 perm/sec)   p_kst 3.905818e-01   p_cons 6.318182e-03   p_joint 2.789091e-02

Joint ci ratio: 6.536338e-02	ci left: 2.814800e-02	ci right 3.005818e-02	k: 3491	n:120000
Cons ci ratio: 1.419298e-01	ci left: 5.868169e-03	ci right 6.772605e-03	k: 757	n:120000
KS ci ratio: 1.415359e-02	ci left: 3.871889e-01	ci right 3.927164e-01	k: 46794	n:120000
SLC37A2   120000 perm   30 sec   (3940 perm/sec)   p_kst 3.899500e-01   p_cons 6.308333e-03   p_joint 2.909167e-02

Joint ci ratio: 6.545797e-02	ci left: 2.596667e-02	ci right 2.773144e-02	k: 3489	n:130000
Cons ci ratio: 1.365432e-01	ci left: 5.869660e-03	ci right 6.737199e-03	k: 818	n:130000
KS ci ratio: 1.359098e-02	ci left: 3.875547e-01	ci right 3.928656e-01	k: 50727	n:130000
SLC37A2   130000 perm   34 sec   (3879 perm/sec)   p_kst 3.902077e-01   p_cons 6.292308e-03   p_joint 2.683846e-02

Joint ci ratio: 6.591085e-02	ci left: 2.383001e-02	ci right 2.546119e-02	k: 3449	n:140000
Cons ci ratio: 1.321049e-01	ci left: 5.836951e-03	ci right 6.669412e-03	k: 874	n:140000
KS ci ratio: 1.309486e-02	ci left: 3.877149e-01	ci right 3.928325e-01	k: 54638	n:140000
SLC37A2   140000 perm   37 sec   (3821 perm/sec)   p_kst 3.902714e-01   p_cons 6.242857e-03   p_joint 2.463571e-02

Joint ci ratio: 6.510239e-02	ci left: 2.283113e-02	ci right 2.437403e-02	k: 3539	n:150000
Cons ci ratio: 1.277284e-01	ci left: 5.841273e-03	ci right 6.644659e-03	k: 935	n:150000
KS ci ratio: 1.264371e-02	ci left: 3.880699e-01	ci right 3.930144e-01	k: 58581	n:150000
SLC37A2   150000 perm   40 sec   (3765 perm/sec)   p_kst 3.905400e-01   p_cons 6.233333e-03   p_joint 2.359333e-02

Joint ci ratio: 5.926862e-02	ci left: 2.582317e-02	ci right 2.740655e-02	k: 4257	n:160000
Cons ci ratio: 1.239477e-01	ci left: 5.827280e-03	ci right 6.603276e-03	k: 993	n:160000
KS ci ratio: 1.224567e-02	ci left: 3.880147e-01	ci right 3.928017e-01	k: 62465	n:160000
SLC37A2   160000 perm   43 sec   (3706 perm/sec)   p_kst 3.904063e-01   p_cons 6.206250e-03   p_joint 2.660625e-02

Joint ci ratio: 5.542024e-02	ci left: 2.779537e-02	ci right 2.938547e-02	k: 4859	n:170000
Cons ci ratio: 1.202541e-01	ci left: 5.838069e-03	ci right 6.590685e-03	k: 1055	n:170000
KS ci ratio: 1.187640e-02	ci left: 3.882327e-01	ci right 3.928769e-01	k: 66394	n:170000
SLC37A2   170000 perm   47 sec   (3648 perm/sec)   p_kst 3.905529e-01   p_cons 6.205882e-03   p_joint 2.858235e-02

Joint ci ratio: 5.698392e-02	ci left: 2.488620e-02	ci right 2.635135e-02	k: 4610	n:180000
Cons ci ratio: 1.169248e-01	ci left: 5.842569e-03	ci right 6.573472e-03	k: 1116	n:180000
KS ci ratio: 1.154146e-02	ci left: 3.883118e-01	ci right 3.928250e-01	k: 70302	n:180000
SLC37A2   180000 perm   50 sec   (3594 perm/sec)   p_kst 3.905667e-01   p_cons 6.200000e-03   p_joint 2.561111e-02

Joint ci ratio: 5.656609e-02	ci left: 2.395483e-02	ci right 2.535446e-02	k: 4683	n:190000
Cons ci ratio: 1.086010e-01	ci left: 6.440505e-03	ci right 7.185189e-03	k: 1293	n:190000
KS ci ratio: 1.123061e-02	ci left: 3.884999e-01	ci right 3.928929e-01	k: 74232	n:190000
SLC37A2   190000 perm   54 sec   (3542 perm/sec)   p_kst 3.906947e-01   p_cons 6.805263e-03   p_joint 2.464737e-02

Joint ci ratio: 5.504532e-02	ci left: 2.404884e-02	ci right 2.541499e-02	k: 4945	n:200000
Cons ci ratio: 1.062487e-01	ci left: 6.400681e-03	ci right 7.123727e-03	k: 1351	n:200000
KS ci ratio: 1.094763e-02	ci left: 3.884959e-01	ci right 3.927773e-01	k: 78127	n:200000
SLC37A2   200000 perm   57 sec   (3493 perm/sec)   p_kst 3.906350e-01   p_cons 6.755000e-03   p_joint 2.472500e-02

Joint ci ratio: 5.441739e-02	ci left: 2.345767e-02	ci right 2.477456e-02	k: 5063	n:210000
Cons ci ratio: 1.033078e-01	ci left: 6.457591e-03	ci right 7.165649e-03	k: 1429	n:210000
KS ci ratio: 1.068148e-02	ci left: 3.886504e-01	ci right 3.928288e-01	k: 82055	n:210000
SLC37A2   210000 perm   61 sec   (3443 perm/sec)   p_kst 3.907381e-01   p_cons 6.804762e-03   p_joint 2.410952e-02

Joint ci ratio: 5.245204e-02	ci left: 2.410928e-02	ci right 2.541238e-02	k: 5446	n:220000
Cons ci ratio: 1.005312e-01	ci left: 6.518442e-03	ci right 7.212828e-03	k: 1509	n:220000
KS ci ratio: 1.042678e-02	ci left: 3.891145e-01	ci right 3.931975e-01	k: 86054	n:220000
SLC37A2   220000 perm   65 sec   (3399 perm/sec)   p_kst 3.911545e-01   p_cons 6.859091e-03   p_joint 2.475455e-02

Joint ci ratio: 4.942053e-02	ci left: 2.596766e-02	ci right 2.728778e-02	k: 6123	n:230000
Cons ci ratio: 9.856183e-02	ci left: 6.493642e-03	ci right 7.171050e-03	k: 1570	n:230000
KS ci ratio: 1.020044e-02	ci left: 3.890267e-01	ci right 3.930196e-01	k: 89935	n:230000
SLC37A2   230000 perm   68 sec   (3358 perm/sec)   p_kst 3.910217e-01   p_cons 6.826087e-03   p_joint 2.662174e-02

Outputting figure to mutsig2_images.part000000000160/SLC37A2.5_1610_230000_0.39102_0.0068261_0.026622.png
                gene_name: SLC37A2
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0068 
      ci_cons_bounds_left: 0.0065 
     ci_cons_bounds_right: 0.0072 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 23 percent done.
SLC38A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
Cons ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
KS ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
SLC38A11   10000 perm   2 sec   (5039 perm/sec)   p_kst 3.055000e-01   p_cons 3.570000e-02   p_joint 5.710000e-02

Joint ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
Cons ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
KS ci ratio: 4.177792e-02	ci left: 2.992193e-01	ci right 3.120372e-01	k: 6112	n:20000
SLC38A11   20000 perm   4 sec   (4863 perm/sec)   p_kst 3.056000e-01   p_cons 3.695000e-02   p_joint 5.745000e-02

Joint ci ratio: 6.402694e-02	ci left: 1.074993e-01	ci right 1.146429e-01	k: 3331	n:30000
Cons ci ratio: 1.106328e-01	ci left: 3.794031e-02	ci right 4.241596e-02	k: 1204	n:30000
KS ci ratio: 3.419882e-02	ci left: 2.993281e-01	ci right 3.097764e-01	k: 9136	n:30000
SLC38A11   30000 perm   6 sec   (4756 perm/sec)   p_kst 3.045333e-01   p_cons 4.013333e-02   p_joint 1.110333e-01

Joint ci ratio: 5.308914e-02	ci left: 1.167565e-01	ci right 1.231488e-01	k: 4797	n:40000
Cons ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
KS ci ratio: 2.967426e-02	ci left: 2.992203e-01	ci right 3.082582e-01	k: 12149	n:40000
SLC38A11   40000 perm   9 sec   (4656 perm/sec)   p_kst 3.037250e-01   p_cons 3.987500e-02   p_joint 1.199250e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A11.5_1191_40000_0.30373_0.039875_0.11993.png
                gene_name: SLC38A11
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 25 percent done.
SLC38A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
SLC38A8   10000 perm   2 sec   (5884 perm/sec)   p_kst 2.275000e-01   p_cons 7.823000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A8.5_1348_10000_0.2275_0.7823_0.3927.png
                gene_name: SLC38A8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 26 percent done.
SLC2A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
KS ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
SLC2A9   10000 perm   2 sec   (5672 perm/sec)   p_kst 9.544000e-01   p_cons 6.517000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC2A9.4_1738_10000_0.9544_0.6517_1.png
                gene_name: SLC2A9
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
SLC30A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
Cons ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
KS ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
SLC30A7   10000 perm   1 sec   (6723 perm/sec)   p_kst 4.119000e-01   p_cons 3.924000e-01   p_joint 5.874000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A7.4_1175_10000_0.4119_0.3924_0.5874.png
                gene_name: SLC30A7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 30 percent done.
SLC38A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
KS ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
SLC38A10   10000 perm   2 sec   (5286 perm/sec)   p_kst 1.450000e-02   p_cons 4.520000e-02   p_joint 7.000000e-03

Joint ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
Cons ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
KS ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
SLC38A10   20000 perm   4 sec   (4816 perm/sec)   p_kst 1.410000e-02   p_cons 4.060000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
Cons ci ratio: 1.106806e-01	ci left: 3.790787e-02	ci right 4.238175e-02	k: 1203	n:30000
KS ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
SLC38A10   30000 perm   6 sec   (4627 perm/sec)   p_kst 1.320000e-02   p_cons 4.010000e-02   p_joint 3.263333e-02

Joint ci ratio: 1.193157e-01	ci left: 2.470519e-02	ci right 2.786409e-02	k: 1050	n:40000
Cons ci ratio: 9.558412e-02	ci left: 3.841811e-02	ci right 4.229898e-02	k: 1613	n:40000
KS ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
SLC38A10   40000 perm   9 sec   (4502 perm/sec)   p_kst 1.275000e-02   p_cons 4.032500e-02   p_joint 2.625000e-02

Joint ci ratio: 1.258314e-01	ci left: 1.784070e-02	ci right 2.025560e-02	k: 951	n:50000
Cons ci ratio: 8.144392e-02	ci left: 4.247374e-02	ci right 4.609941e-02	k: 2213	n:50000
KS ci ratio: 1.539552e-01	ci left: 1.181382e-02	ci right 1.380334e-02	k: 639	n:50000
SLC38A10   50000 perm   11 sec   (4401 perm/sec)   p_kst 1.278000e-02   p_cons 4.426000e-02   p_joint 1.902000e-02

Joint ci ratio: 1.274017e-01	ci left: 1.454287e-02	ci right 1.653773e-02	k: 931	n:60000
Cons ci ratio: 7.468383e-02	ci left: 4.225810e-02	ci right 4.555287e-02	k: 2633	n:60000
KS ci ratio: 1.409137e-01	ci left: 1.183540e-02	ci right 1.364552e-02	k: 763	n:60000
SLC38A10   60000 perm   14 sec   (4314 perm/sec)   p_kst 1.271667e-02   p_cons 4.388333e-02   p_joint 1.551667e-02

Joint ci ratio: 1.323022e-01	ci left: 1.156569e-02	ci right 1.321795e-02	k: 866	n:70000
Cons ci ratio: 6.938033e-02	ci left: 4.209907e-02	ci right 4.513891e-02	k: 3052	n:70000
KS ci ratio: 1.307832e-01	ci left: 1.184211e-02	ci right 1.351293e-02	k: 886	n:70000
SLC38A10   70000 perm   17 sec   (4237 perm/sec)   p_kst 1.265714e-02   p_cons 4.360000e-02   p_joint 1.237143e-02

Joint ci ratio: 1.832480e-01	ci left: 5.166207e-03	ci right 6.220127e-03	k: 454	n:80000
Cons ci ratio: 6.661605e-02	ci left: 4.010375e-02	ci right 4.287963e-02	k: 3318	n:80000
KS ci ratio: 1.230588e-01	ci left: 1.175370e-02	ci right 1.330695e-02	k: 1001	n:80000
SLC38A10   80000 perm   19 sec   (4162 perm/sec)   p_kst 1.251250e-02   p_cons 4.147500e-02   p_joint 5.675000e-03

Joint ci ratio: 1.327963e-01	ci left: 8.951757e-03	ci right 1.023570e-02	k: 862	n:90000
Cons ci ratio: 6.256952e-02	ci left: 4.047984e-02	ci right 4.310536e-02	k: 3760	n:90000
KS ci ratio: 1.196901e-01	ci left: 1.107238e-02	ci right 1.249268e-02	k: 1059	n:90000
SLC38A10   90000 perm   22 sec   (4087 perm/sec)   p_kst 1.176667e-02   p_cons 4.177778e-02   p_joint 9.577778e-03

Joint ci ratio: 1.327831e-01	ci left: 8.066001e-03	ci right 9.222769e-03	k: 863	n:100000
Cons ci ratio: 5.946933e-02	ci left: 4.040032e-02	ci right 4.288636e-02	k: 4163	n:100000
KS ci ratio: 1.136838e-01	ci left: 1.108159e-02	ci right 1.242695e-02	k: 1174	n:100000
SLC38A10   100000 perm   25 sec   (4018 perm/sec)   p_kst 1.174000e-02   p_cons 4.163000e-02   p_joint 8.630000e-03

Joint ci ratio: 1.279968e-01	ci left: 7.913119e-03	ci right 9.003944e-03	k: 929	n:110000
Cons ci ratio: 5.673024e-02	ci left: 4.041861e-02	ci right 4.278745e-02	k: 4575	n:110000
KS ci ratio: 1.085847e-01	ci left: 1.107289e-02	ci right 1.235305e-02	k: 1287	n:110000
SLC38A10   110000 perm   28 sec   (3951 perm/sec)   p_kst 1.170000e-02   p_cons 4.159091e-02   p_joint 8.445455e-03

Joint ci ratio: 1.375252e-01	ci left: 6.262316e-03	ci right 7.195096e-03	k: 806	n:120000
Cons ci ratio: 5.427540e-02	ci left: 4.052653e-02	ci right 4.279568e-02	k: 4998	n:120000
KS ci ratio: 1.034451e-01	ci left: 1.121292e-02	ci right 1.244417e-02	k: 1418	n:120000
SLC38A10   120000 perm   31 sec   (3863 perm/sec)   p_kst 1.181667e-02   p_cons 4.165000e-02   p_joint 6.716667e-03

Joint ci ratio: 1.358770e-01	ci left: 5.929113e-03	ci right 6.800818e-03	k: 826	n:130000
Cons ci ratio: 5.220442e-02	ci left: 4.048299e-02	ci right 4.266059e-02	k: 5403	n:130000
KS ci ratio: 9.952621e-02	ci left: 1.120505e-02	ci right 1.238610e-02	k: 1532	n:130000
SLC38A10   130000 perm   34 sec   (3809 perm/sec)   p_kst 1.178462e-02   p_cons 4.156154e-02   p_joint 6.353846e-03

Joint ci ratio: 1.327939e-01	ci left: 5.774784e-03	ci right 6.603012e-03	k: 865	n:140000
Cons ci ratio: 5.036277e-02	ci left: 4.043298e-02	ci right 4.252892e-02	k: 5806	n:140000
KS ci ratio: 9.590362e-02	ci left: 1.122696e-02	ci right 1.236482e-02	k: 1650	n:140000
SLC38A10   140000 perm   37 sec   (3759 perm/sec)   p_kst 1.178571e-02   p_cons 4.147143e-02   p_joint 6.178571e-03

Joint ci ratio: 1.106792e-01	ci left: 7.834098e-03	ci right 8.758393e-03	k: 1243	n:150000
Cons ci ratio: 4.753341e-02	ci left: 4.234142e-02	ci right 4.440961e-02	k: 6505	n:150000
KS ci ratio: 9.302303e-02	ci left: 1.115543e-02	ci right 1.225023e-02	k: 1754	n:150000
SLC38A10   150000 perm   40 sec   (3706 perm/sec)   p_kst 1.169333e-02   p_cons 4.336667e-02   p_joint 8.286667e-03

Joint ci ratio: 8.894614e-02	ci left: 1.145998e-02	ci right 1.253281e-02	k: 1918	n:160000
Cons ci ratio: 4.726473e-02	ci left: 4.024369e-02	ci right 4.219798e-02	k: 6594	n:160000
KS ci ratio: 9.011790e-02	ci left: 1.116051e-02	ci right 1.221980e-02	k: 1869	n:160000
SLC38A10   160000 perm   44 sec   (3655 perm/sec)   p_kst 1.168125e-02   p_cons 4.121250e-02   p_joint 1.198750e-02

Outputting figure to mutsig2_images.part000000000160/SLC38A10.4_3702_160000_0.011681_0.041212_0.011987.png
                gene_name: SLC38A10
               theta_stop: 0.090 
                    nperm: 160000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.013 

Current progress: 32 percent done.
SLC38A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
SLC38A6   10000 perm   2 sec   (5740 perm/sec)   p_kst 5.670000e-01   p_cons 6.159000e-01   p_joint 6.621000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A6.4_1719_10000_0.567_0.6159_0.6621.png
                gene_name: SLC38A6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 34 percent done.
SLC28A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
KS ci ratio: 7.452509e-03	ci left: 9.614198e-01	ci right 9.687060e-01	k: 9652	n:10000
SLC28A2   10000 perm   2 sec   (5986 perm/sec)   p_kst 9.652000e-01   p_cons 9.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC28A2.3_2045_10000_0.9652_0.9719_1.png
                gene_name: SLC28A2
               theta_stop: 0.0075 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
SLC29A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
KS ci ratio: 1.315740e-02	ci left: 8.927222e-01	ci right 9.046444e-01	k: 8988	n:10000
SLC29A4   10000 perm   2 sec   (6324 perm/sec)   p_kst 8.988000e-01   p_cons 5.951000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC29A4.3_1633_10000_0.8988_0.5951_1.png
                gene_name: SLC29A4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
SLC2A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
Cons ci ratio: 3.274162e-02	ci left: 5.792819e-01	ci right 5.986662e-01	k: 5890	n:10000
KS ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
SLC2A13   10000 perm   2 sec   (6118 perm/sec)   p_kst 6.583000e-01   p_cons 5.890000e-01   p_joint 7.814000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A13.3_1987_10000_0.6583_0.589_0.7814.png
                gene_name: SLC2A13
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 40 percent done.
SLC2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
KS ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
SLC2A2   10000 perm   1 sec   (6677 perm/sec)   p_kst 9.323000e-01   p_cons 6.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC2A2.3_1619_10000_0.9323_0.6825_1.png
                gene_name: SLC2A2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
SLC2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
KS ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
SLC2A7   10000 perm   2 sec   (6197 perm/sec)   p_kst 2.270000e-02   p_cons 8.920000e-01   p_joint 1.097000e-01

Joint ci ratio: 9.383708e-02	ci left: 7.647207e-02	ci right 8.405049e-02	k: 1604	n:20000
Cons ci ratio: 1.069203e-02	ci left: 8.657679e-01	ci right 8.751241e-01	k: 17410	n:20000
KS ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
SLC2A7   20000 perm   4 sec   (5566 perm/sec)   p_kst 2.440000e-02   p_cons 8.705000e-01   p_joint 8.020000e-02

Joint ci ratio: 8.023455e-02	ci left: 7.073537e-02	ci right 7.668083e-02	k: 2210	n:30000
Cons ci ratio: 8.702632e-03	ci left: 8.673568e-01	ci right 8.749712e-01	k: 26136	n:30000
KS ci ratio: 1.415290e-01	ci left: 2.316622e-02	ci right 2.672660e-02	k: 747	n:30000
SLC2A7   30000 perm   6 sec   (5122 perm/sec)   p_kst 2.490000e-02   p_cons 8.712000e-01   p_joint 7.366667e-02

Joint ci ratio: 5.738318e-02	ci left: 1.014691e-01	ci right 1.074885e-01	k: 4178	n:40000
Cons ci ratio: 7.551689e-03	ci left: 8.674230e-01	ci right 8.740231e-01	k: 34830	n:40000
KS ci ratio: 1.236749e-01	ci left: 2.298284e-02	ci right 2.603672e-02	k: 979	n:40000
SLC2A7   40000 perm   8 sec   (4804 perm/sec)   p_kst 2.447500e-02   p_cons 8.707500e-01   p_joint 1.044500e-01

Joint ci ratio: 6.055029e-02	ci left: 7.499341e-02	ci right 7.969580e-02	k: 3866	n:50000
Cons ci ratio: 6.797813e-03	ci left: 8.663140e-01	ci right 8.722430e-01	k: 43465	n:50000
KS ci ratio: 1.106184e-01	ci left: 2.314314e-02	ci right 2.587245e-02	k: 1224	n:50000
SLC2A7   50000 perm   11 sec   (4724 perm/sec)   p_kst 2.448000e-02   p_cons 8.693000e-01   p_joint 7.732000e-02

Joint ci ratio: 5.626908e-02	ci left: 7.272377e-02	ci right 7.695080e-02	k: 4489	n:60000
Cons ci ratio: 6.221863e-03	ci left: 8.659715e-01	ci right 8.713928e-01	k: 52122	n:60000
KS ci ratio: 1.015843e-01	ci left: 2.298513e-02	ci right 2.546118e-02	k: 1452	n:60000
SLC2A7   60000 perm   13 sec   (4641 perm/sec)   p_kst 2.420000e-02   p_cons 8.687000e-01   p_joint 7.481667e-02

Joint ci ratio: 5.375680e-02	ci left: 6.869898e-02	ci right 7.250813e-02	k: 4941	n:70000
Cons ci ratio: 5.741892e-03	ci left: 8.669101e-01	ci right 8.719163e-01	k: 60860	n:70000
KS ci ratio: 9.388347e-02	ci left: 2.315798e-02	ci right 2.545311e-02	k: 1700	n:70000
SLC2A7   70000 perm   15 sec   (4564 perm/sec)   p_kst 2.428571e-02   p_cons 8.694286e-01   p_joint 7.058571e-02

Outputting figure to mutsig2_images.part000000000160/SLC2A7.3_1587_70000_0.024286_0.86943_0.070586.png
                gene_name: SLC2A7
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 43 percent done.
SLC30A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
KS ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
SLC30A2   10000 perm   2 sec   (6421 perm/sec)   p_kst 6.409000e-01   p_cons 8.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A2.3_1151_10000_0.6409_0.8916_1.png
                gene_name: SLC30A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
SLC30A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
KS ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
SLC30A8   10000 perm   2 sec   (6429 perm/sec)   p_kst 3.367000e-01   p_cons 4.590000e-02   p_joint 4.670000e-02

Joint ci ratio: 7.382534e-02	ci left: 1.189702e-01	ci right 1.281396e-01	k: 2470	n:20000
Cons ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
KS ci ratio: 3.875733e-02	ci left: 3.317915e-01	ci right 3.449555e-01	k: 6767	n:20000
SLC30A8   20000 perm   3 sec   (5808 perm/sec)   p_kst 3.383500e-01   p_cons 4.245000e-02   p_joint 1.235000e-01

Joint ci ratio: 7.863341e-02	ci left: 7.348400e-02	ci right 7.953165e-02	k: 2294	n:30000
Cons ci ratio: 1.052010e-01	ci left: 4.190172e-02	ci right 4.658706e-02	k: 1326	n:30000
KS ci ratio: 3.176337e-02	ci left: 3.313517e-01	ci right 3.420799e-01	k: 10101	n:30000
SLC30A8   30000 perm   5 sec   (5544 perm/sec)   p_kst 3.367000e-01   p_cons 4.420000e-02   p_joint 7.646667e-02

Joint ci ratio: 6.945997e-02	ci left: 7.118259e-02	ci right 7.632949e-02	k: 2949	n:40000
Cons ci ratio: 9.165953e-02	ci left: 4.171734e-02	ci right 4.574923e-02	k: 1748	n:40000
KS ci ratio: 2.751764e-02	ci left: 3.319188e-01	ci right 3.412049e-01	k: 13462	n:40000
SLC30A8   40000 perm   7 sec   (5369 perm/sec)   p_kst 3.365500e-01   p_cons 4.370000e-02   p_joint 7.372500e-02

Outputting figure to mutsig2_images.part000000000160/SLC30A8.3_1142_40000_0.33655_0.0437_0.073725.png
                gene_name: SLC30A8
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 47 percent done.
SLC30A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
SLC30A9   10000 perm   2 sec   (6194 perm/sec)   p_kst 8.009000e-01   p_cons 7.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A9.3_1779_10000_0.8009_0.7036_1.png
                gene_name: SLC30A9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
SLC34A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
KS ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
SLC34A1   10000 perm   2 sec   (6513 perm/sec)   p_kst 3.319000e-01   p_cons 8.350000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000160/SLC34A1.3_2059_10000_0.3319_0.835_0.5634.png
                gene_name: SLC34A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 51 percent done.
SLC35B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.324121e-02	ci left: 7.311828e-01	ci right 7.484773e-01	k: 7399	n:10000
Cons ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
KS ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
SLC35B1   10000 perm   2 sec   (6540 perm/sec)   p_kst 7.375000e-01   p_cons 3.684000e-01   p_joint 7.399000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35B1.3_1005_10000_0.7375_0.3684_0.7399.png
                gene_name: SLC35B1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 53 percent done.
SLC35B3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
KS ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
SLC35B3   10000 perm   2 sec   (6426 perm/sec)   p_kst 3.552000e-01   p_cons 8.660000e-02   p_joint 2.412000e-01

Joint ci ratio: 4.856649e-02	ci left: 2.396964e-01	ci right 2.516776e-01	k: 4913	n:20000
Cons ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
KS ci ratio: 3.695823e-02	ci left: 3.532936e-01	ci right 3.666471e-01	k: 7199	n:20000
SLC35B3   20000 perm   3 sec   (5791 perm/sec)   p_kst 3.599500e-01   p_cons 8.565000e-02   p_joint 2.456500e-01

Outputting figure to mutsig2_images.part000000000160/SLC35B3.2_1246_20000_0.35995_0.08565_0.24565.png
                gene_name: SLC35B3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 55 percent done.
SLC35E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
SLC35E3   10000 perm   2 sec   (6411 perm/sec)   p_kst 6.283000e-01   p_cons 3.950000e-02   p_joint 3.386000e-01

Joint ci ratio: 3.880499e-02	ci left: 3.312442e-01	ci right 3.444030e-01	k: 6756	n:20000
Cons ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
KS ci ratio: 2.133251e-02	ci left: 6.212582e-01	ci right 6.347046e-01	k: 12560	n:20000
SLC35E3   20000 perm   3 sec   (5835 perm/sec)   p_kst 6.280000e-01   p_cons 3.820000e-02   p_joint 3.378000e-01

Joint ci ratio: 3.157468e-02	ci left: 3.340078e-01	ci right 3.447567e-01	k: 10181	n:30000
Cons ci ratio: 1.143939e-01	ci left: 3.550805e-02	ci right 3.984874e-02	k: 1129	n:30000
KS ci ratio: 1.735489e-02	ci left: 6.242067e-01	ci right 6.351681e-01	k: 18891	n:30000
SLC35E3   30000 perm   5 sec   (5591 perm/sec)   p_kst 6.297000e-01   p_cons 3.763333e-02   p_joint 3.393667e-01

Joint ci ratio: 2.737957e-02	ci left: 3.341611e-01	ci right 3.434623e-01	k: 13552	n:40000
Cons ci ratio: 9.838063e-02	ci left: 3.629386e-02	ci right 4.007357e-02	k: 1526	n:40000
KS ci ratio: 1.512511e-02	ci left: 6.219886e-01	ci right 6.314930e-01	k: 25070	n:40000
SLC35E3   40000 perm   7 sec   (5424 perm/sec)   p_kst 6.267500e-01   p_cons 3.815000e-02   p_joint 3.388000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35E3.3_962_40000_0.62675_0.03815_0.3388.png
                gene_name: SLC35E3
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 57 percent done.
SLC36A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
SLC36A2   10000 perm   1 sec   (6817 perm/sec)   p_kst 8.019000e-01   p_cons 5.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC36A2.3_1492_10000_0.8019_0.5193_1.png
                gene_name: SLC36A2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SLC38A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
Cons ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KS ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
SLC38A1   10000 perm   2 sec   (6084 perm/sec)   p_kst 9.389000e-01   p_cons 4.644000e-01   p_joint 7.093000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A1.3_1524_10000_0.9389_0.4644_0.7093.png
                gene_name: SLC38A1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 60 percent done.
SLC38A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.325991e-02	ci left: 4.410133e-01	ci right 4.606154e-01	k: 4508	n:10000
KS ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
SLC38A4   10000 perm   2 sec   (6054 perm/sec)   p_kst 8.683000e-01   p_cons 4.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC38A4.3_1704_10000_0.8683_0.4508_1.png
                gene_name: SLC38A4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SLC39A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
Cons ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
KS ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
SLC39A11   10000 perm   2 sec   (6390 perm/sec)   p_kst 4.890000e-02   p_cons 8.479000e-01   p_joint 2.437000e-01

Joint ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
Cons ci ratio: 1.172237e-02	ci left: 8.432528e-01	ci right 8.532458e-01	k: 16966	n:20000
KS ci ratio: 1.199386e-01	ci left: 4.765147e-02	ci right 5.377999e-02	k: 1013	n:20000
SLC39A11   20000 perm   3 sec   (5714 perm/sec)   p_kst 5.065000e-02   p_cons 8.483000e-01   p_joint 8.805000e-02

Joint ci ratio: 5.043710e-02	ci left: 1.633561e-01	ci right 1.718417e-01	k: 5027	n:30000
Cons ci ratio: 9.536354e-03	ci left: 8.451338e-01	ci right 8.532651e-01	k: 25477	n:30000
KS ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
SLC39A11   30000 perm   5 sec   (5457 perm/sec)   p_kst 5.110000e-02   p_cons 8.492333e-01   p_joint 1.675667e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A11.3_1065_30000_0.0511_0.84923_0.16757.png
                gene_name: SLC39A11
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 64 percent done.
SLC28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
SLC28A1   10000 perm   2 sec   (6264 perm/sec)   p_kst 7.711000e-01   p_cons 5.420000e-02   p_joint 4.912000e-01

Joint ci ratio: 3.869251e-02	ci left: 3.325379e-01	ci right 3.457089e-01	k: 6782	n:20000
Cons ci ratio: 1.154500e-01	ci left: 5.134529e-02	ci right 5.768501e-02	k: 1089	n:20000
KS ci ratio: 1.523258e-02	ci left: 7.621367e-01	ci right 7.738853e-01	k: 15361	n:20000
SLC28A1   20000 perm   4 sec   (5641 perm/sec)   p_kst 7.680500e-01   p_cons 5.445000e-02   p_joint 3.391000e-01

Joint ci ratio: 2.236851e-02	ci left: 5.001588e-01	ci right 5.115067e-01	k: 15175	n:30000
Cons ci ratio: 9.475660e-02	ci left: 5.140387e-02	ci right 5.654961e-02	k: 1618	n:30000
KS ci ratio: 1.231224e-02	ci left: 7.668403e-01	ci right 7.763737e-01	k: 23149	n:30000
SLC28A1   30000 perm   6 sec   (5368 perm/sec)   p_kst 7.716333e-01   p_cons 5.393333e-02   p_joint 5.058333e-01

Outputting figure to mutsig2_images.part000000000160/SLC28A1.2_2089_30000_0.77163_0.053933_0.50583.png
                gene_name: SLC28A1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 66 percent done.
SLC29A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
Cons ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
KS ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
SLC29A1   10000 perm   2 sec   (6403 perm/sec)   p_kst 1.164000e-01   p_cons 3.125000e-01   p_joint 1.404000e-01

Joint ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
Cons ci ratio: 4.099868e-02	ci left: 3.072222e-01	ci right 3.201320e-01	k: 6273	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
SLC29A1   20000 perm   4 sec   (5440 perm/sec)   p_kst 1.163000e-01   p_cons 3.136500e-01   p_joint 9.025000e-02

Outputting figure to mutsig2_images.part000000000160/SLC29A1.2_1419_20000_0.1163_0.31365_0.09025.png
                gene_name: SLC29A1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 68 percent done.
SLC2A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.474606e-03	ci left: 9.612099e-01	ci right 9.685160e-01	k: 9650	n:10000
Cons ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
SLC2A12   10000 perm   2 sec   (6528 perm/sec)   p_kst 5.373000e-01   p_cons 7.906000e-01   p_joint 9.650000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A12.2_1874_10000_0.5373_0.7906_0.965.png
                gene_name: SLC2A12
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 70 percent done.
SLC30A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
SLC30A4   10000 perm   1 sec   (6833 perm/sec)   p_kst 8.046000e-01   p_cons 9.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A4.2_1318_10000_0.8046_0.9011_1.png
                gene_name: SLC30A4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SLC30A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
KS ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
SLC30A6   10000 perm   2 sec   (6569 perm/sec)   p_kst 3.572000e-01   p_cons 4.124000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A6.2_1442_10000_0.3572_0.4124_0.3948.png
                gene_name: SLC30A6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 74 percent done.
SLC33A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
SLC33A1   10000 perm   2 sec   (6535 perm/sec)   p_kst 2.047000e-01   p_cons 6.700000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
KS ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
SLC33A1   20000 perm   3 sec   (5866 perm/sec)   p_kst 2.018000e-01   p_cons 6.380000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.609578e-02	ci left: 6.184395e-02	ci right 6.744073e-02	k: 1938	n:30000
KS ci ratio: 4.492718e-02	ci left: 1.978327e-01	ci right 2.069584e-01	k: 6071	n:30000
SLC33A1   30000 perm   5 sec   (5589 perm/sec)   p_kst 2.023667e-01   p_cons 6.460000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC33A1.2_1674_30000_0.20237_0.0646_1.png
                gene_name: SLC33A1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SLC35A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
Cons ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
KS ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
SLC35A2   10000 perm   2 sec   (6585 perm/sec)   p_kst 3.433000e-01   p_cons 1.925000e-01   p_joint 5.719000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A2.2_1367_10000_0.3433_0.1925_0.5719.png
                gene_name: SLC35A2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 77 percent done.
SLC35A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.547181e-02	ci left: 6.940369e-01	ci right 7.120447e-01	k: 7031	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
SLC35A5   10000 perm   1 sec   (6853 perm/sec)   p_kst 5.426000e-01   p_cons 5.628000e-01   p_joint 7.031000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A5.2_1299_10000_0.5426_0.5628_0.7031.png
                gene_name: SLC35A5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 79 percent done.
SLC35D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.111290e-02	ci left: 2.825056e-01	ci right 3.004161e-01	k: 2914	n:10000
KS ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
SLC35D1   10000 perm   1 sec   (6706 perm/sec)   p_kst 7.142000e-01   p_cons 2.914000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC35D1.2_1116_10000_0.7142_0.2914_1.png
                gene_name: SLC35D1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
SLC35D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
SLC35D2   10000 perm   1 sec   (6776 perm/sec)   p_kst 6.672000e-01   p_cons 5.420000e-02   p_joint 2.938000e-01

Joint ci ratio: 4.369974e-02	ci left: 2.805880e-01	ci right 2.931740e-01	k: 5737	n:20000
Cons ci ratio: 1.143993e-01	ci left: 5.226943e-02	ci right 5.866058e-02	k: 1108	n:20000
KS ci ratio: 1.954491e-02	ci left: 6.613238e-01	ci right 6.744274e-01	k: 13358	n:20000
SLC35D2   20000 perm   3 sec   (6055 perm/sec)   p_kst 6.679000e-01   p_cons 5.540000e-02   p_joint 2.868500e-01

Joint ci ratio: 4.631325e-02	ci left: 1.882831e-01	ci right 1.972432e-01	k: 5782	n:30000
Cons ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
KS ci ratio: 1.596215e-02	ci left: 6.624375e-01	ci right 6.731300e-01	k: 20034	n:30000
SLC35D2   30000 perm   5 sec   (5774 perm/sec)   p_kst 6.678000e-01   p_cons 5.550000e-02   p_joint 1.927333e-01

Outputting figure to mutsig2_images.part000000000160/SLC35D2.2_1062_30000_0.6678_0.0555_0.19273.png
                gene_name: SLC35D2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 83 percent done.
SLC35E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
Cons ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
SLC35E2   10000 perm   2 sec   (6293 perm/sec)   p_kst 9.900000e-03   p_cons 1.724000e-01   p_joint 4.990000e-01

Joint ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
Cons ci ratio: 6.121368e-02	ci left: 1.649161e-01	ci right 1.753800e-01	k: 3402	n:20000
KS ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
SLC35E2   20000 perm   4 sec   (5357 perm/sec)   p_kst 9.250000e-03   p_cons 1.701000e-01   p_joint 3.725000e-02

Joint ci ratio: 1.156222e-01	ci left: 3.476265e-02	ci right 3.906096e-02	k: 1106	n:30000
Cons ci ratio: 5.220621e-02	ci left: 1.540541e-01	ci right 1.623455e-01	k: 4745	n:30000
KS ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
SLC35E2   30000 perm   6 sec   (5260 perm/sec)   p_kst 8.700000e-03   p_cons 1.581667e-01   p_joint 3.686667e-02

Joint ci ratio: 1.016433e-01	ci left: 3.402493e-02	ci right 3.769285e-02	k: 1433	n:40000
Cons ci ratio: 4.550710e-02	ci left: 1.529024e-01	ci right 1.600475e-01	k: 6258	n:40000
KS ci ratio: 2.126320e-01	ci left: 7.528943e-03	ci right 9.343505e-03	k: 336	n:40000
SLC35E2   40000 perm   8 sec   (5168 perm/sec)   p_kst 8.400000e-03   p_cons 1.564500e-01   p_joint 3.582500e-02

Joint ci ratio: 9.119012e-02	ci left: 3.401245e-02	ci right 3.728175e-02	k: 1781	n:50000
Cons ci ratio: 4.094430e-02	ci left: 1.517388e-01	ci right 1.581014e-01	k: 7745	n:50000
KS ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
SLC35E2   50000 perm   10 sec   (5069 perm/sec)   p_kst 8.260000e-03   p_cons 1.549000e-01   p_joint 3.562000e-02

Joint ci ratio: 8.297173e-02	ci left: 3.437654e-02	ci right 3.736857e-02	k: 2151	n:60000
Cons ci ratio: 3.732038e-02	ci left: 1.524103e-01	ci right 1.582231e-01	k: 9318	n:60000
KS ci ratio: 1.728398e-01	ci left: 7.765004e-03	ci right 9.249791e-03	k: 509	n:60000
SLC35E2   60000 perm   12 sec   (4976 perm/sec)   p_kst 8.483333e-03   p_cons 1.553000e-01   p_joint 3.585000e-02

Joint ci ratio: 7.621553e-02	ci left: 3.502471e-02	ci right 3.781388e-02	k: 2548	n:70000
Cons ci ratio: 3.453914e-02	ci left: 1.527234e-01	ci right 1.581052e-01	k: 10878	n:70000
KS ci ratio: 1.588118e-01	ci left: 7.942983e-03	ci right 9.326782e-03	k: 603	n:70000
SLC35E2   70000 perm   14 sec   (4888 perm/sec)   p_kst 8.614286e-03   p_cons 1.554000e-01   p_joint 3.640000e-02

Joint ci ratio: 7.582877e-02	ci left: 3.109790e-02	ci right 3.356117e-02	k: 2585	n:80000
Cons ci ratio: 3.228559e-02	ci left: 1.530821e-01	ci right 1.581179e-01	k: 12447	n:80000
KS ci ratio: 1.491320e-01	ci left: 7.923621e-03	ci right 9.212399e-03	k: 684	n:80000
SLC35E2   80000 perm   17 sec   (4803 perm/sec)   p_kst 8.550000e-03   p_cons 1.555875e-01   p_joint 3.231250e-02

Joint ci ratio: 4.160846e-02	ci left: 8.789585e-02	ci right 9.164175e-02	k: 8078	n:90000
Cons ci ratio: 3.050496e-02	ci left: 1.526633e-01	ci right 1.574034e-01	k: 13952	n:90000
KS ci ratio: 1.397482e-01	ci left: 8.060695e-03	ci right 9.282401e-03	k: 779	n:90000
SLC35E2   90000 perm   19 sec   (4719 perm/sec)   p_kst 8.655556e-03   p_cons 1.550222e-01   p_joint 8.975556e-02

Joint ci ratio: 3.950148e-02	ci left: 8.787638e-02	ci right 9.142746e-02	k: 8964	n:100000
Cons ci ratio: 2.899418e-02	ci left: 1.522948e-01	ci right 1.567853e-01	k: 15453	n:100000
KS ci ratio: 1.324741e-01	ci left: 8.104685e-03	ci right 9.264083e-03	k: 867	n:100000
SLC35E2   100000 perm   22 sec   (4638 perm/sec)   p_kst 8.670000e-03   p_cons 1.545300e-01   p_joint 8.964000e-02

Joint ci ratio: 3.757016e-02	ci left: 8.836015e-02	ci right 9.175241e-02	k: 9905	n:110000
Cons ci ratio: 2.766258e-02	ci left: 1.522331e-01	ci right 1.565124e-01	k: 16980	n:110000
KS ci ratio: 1.259636e-01	ci left: 8.177252e-03	ci right 9.285247e-03	k: 959	n:110000
SLC35E2   110000 perm   24 sec   (4561 perm/sec)   p_kst 8.718182e-03   p_cons 1.543636e-01   p_joint 9.004545e-02

Joint ci ratio: 3.599366e-02	ci left: 8.832870e-02	ci right 9.157448e-02	k: 10793	n:120000
Cons ci ratio: 2.644670e-02	ci left: 1.526996e-01	ci right 1.568004e-01	k: 18569	n:120000
KS ci ratio: 1.204429e-01	ci left: 8.222717e-03	ci right 9.284561e-03	k: 1049	n:120000
SLC35E2   120000 perm   27 sec   (4484 perm/sec)   p_kst 8.741667e-03   p_cons 1.547417e-01   p_joint 8.994167e-02

Joint ci ratio: 2.506044e-02	ci left: 1.564114e-01	ci right 1.603885e-01	k: 20591	n:130000
Cons ci ratio: 2.541104e-02	ci left: 1.527611e-01	ci right 1.567005e-01	k: 20114	n:130000
KS ci ratio: 1.157949e-01	ci left: 8.232198e-03	ci right 9.251435e-03	k: 1135	n:130000
SLC35E2   130000 perm   29 sec   (4411 perm/sec)   p_kst 8.730769e-03   p_cons 1.547231e-01   p_joint 1.583923e-01

Joint ci ratio: 2.415079e-02	ci left: 1.564625e-01	ci right 1.602945e-01	k: 22172	n:140000
Cons ci ratio: 2.445686e-02	ci left: 1.531505e-01	ci right 1.569495e-01	k: 21706	n:140000
KS ci ratio: 1.111885e-01	ci left: 8.310455e-03	ci right 9.295765e-03	k: 1231	n:140000
SLC35E2   140000 perm   32 sec   (4338 perm/sec)   p_kst 8.792857e-03   p_cons 1.550429e-01   p_joint 1.583714e-01

Joint ci ratio: 3.091673e-02	ci left: 9.530150e-02	ci right 9.830077e-02	k: 14519	n:150000
Cons ci ratio: 2.366824e-02	ci left: 1.527672e-01	ci right 1.564328e-01	k: 23189	n:150000
KS ci ratio: 1.075417e-01	ci left: 8.307591e-03	ci right 9.258209e-03	k: 1316	n:150000
SLC35E2   150000 perm   35 sec   (4269 perm/sec)   p_kst 8.773333e-03   p_cons 1.545933e-01   p_joint 9.679333e-02

Joint ci ratio: 3.256594e-02	ci left: 8.168366e-02	ci right 8.439397e-02	k: 13285	n:160000
Cons ci ratio: 2.292709e-02	ci left: 1.527073e-01	ci right 1.562552e-01	k: 24716	n:160000
KS ci ratio: 1.044951e-01	ci left: 8.262930e-03	ci right 9.180005e-03	k: 1394	n:160000
SLC35E2   160000 perm   38 sec   (4201 perm/sec)   p_kst 8.712500e-03   p_cons 1.544750e-01   p_joint 8.303125e-02

Joint ci ratio: 3.160994e-02	ci left: 8.164602e-02	ci right 8.427410e-02	k: 14102	n:170000
Cons ci ratio: 2.225348e-02	ci left: 1.526326e-01	ci right 1.560733e-01	k: 26239	n:170000
KS ci ratio: 1.016241e-01	ci left: 8.235328e-03	ci right 9.122726e-03	k: 1474	n:170000
SLC35E2   170000 perm   41 sec   (4138 perm/sec)   p_kst 8.670588e-03   p_cons 1.543471e-01   p_joint 8.295294e-02

Joint ci ratio: 3.074359e-02	ci left: 8.156396e-02	ci right 8.411616e-02	k: 14910	n:180000
Cons ci ratio: 2.160146e-02	ci left: 1.529825e-01	ci right 1.563287e-01	k: 27837	n:180000
KS ci ratio: 9.846758e-02	ci left: 8.297812e-03	ci right 9.162567e-03	k: 1570	n:180000
SLC35E2   180000 perm   44 sec   (4075 perm/sec)   p_kst 8.722222e-03   p_cons 1.546500e-01   p_joint 8.283333e-02

Outputting figure to mutsig2_images.part000000000160/SLC35E2.2_2071_180000_0.0087222_0.15465_0.082833.png
                gene_name: SLC35E2
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0087 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.084 

Current progress: 85 percent done.
SLC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
Cons ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
KS ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
SLC37A3   10000 perm   2 sec   (6473 perm/sec)   p_kst 1.924000e-01   p_cons 4.858000e-01   p_joint 8.856000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A3.2_1690_10000_0.1924_0.4858_0.8856.png
                gene_name: SLC37A3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 87 percent done.
SLC38A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264985e-02	ci left: 7.410878e-01	ci right 7.581666e-01	k: 7497	n:10000
Cons ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
SLC38A2   10000 perm   2 sec   (6468 perm/sec)   p_kst 6.894000e-01   p_cons 1.608000e-01   p_joint 7.497000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A2.2_1581_10000_0.6894_0.1608_0.7497.png
                gene_name: SLC38A2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 89 percent done.
SLC38A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
SLC38A5   10000 perm   2 sec   (6571 perm/sec)   p_kst 2.568000e-01   p_cons 1.590000e-01   p_joint 2.044000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A5.2_1479_10000_0.2568_0.159_0.2044.png
                gene_name: SLC38A5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 91 percent done.
SLC38A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
SLC38A7   10000 perm   2 sec   (6587 perm/sec)   p_kst 4.661000e-01   p_cons 3.308000e-01   p_joint 4.027000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A7.2_1429_10000_0.4661_0.3308_0.4027.png
                gene_name: SLC38A7
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 92 percent done.
SLC39A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
Cons ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
KS ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
SLC39A1   10000 perm   1 sec   (6845 perm/sec)   p_kst 9.355000e-01   p_cons 2.207000e-01   p_joint 6.543000e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A1.2_987_10000_0.9355_0.2207_0.6543.png
                gene_name: SLC39A1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 94 percent done.
SLC39A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
Cons ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
KS ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
SLC39A10   10000 perm   2 sec   (5908 perm/sec)   p_kst 3.623000e-01   p_cons 6.317000e-01   p_joint 8.990000e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A10.2_2532_10000_0.3623_0.6317_0.899.png
                gene_name: SLC39A10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
SLC39A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
KS ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
SLC39A14   10000 perm   2 sec   (6364 perm/sec)   p_kst 2.974000e-01   p_cons 8.275000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC39A14.2_1803_10000_0.2974_0.8275_1.png
                gene_name: SLC39A14
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC39A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
Cons ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
SLC39A2   10000 perm   1 sec   (7078 perm/sec)   p_kst 8.040000e-02   p_cons 3.114000e-01   p_joint 1.309000e-01

Joint ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
Cons ci ratio: 4.141655e-02	ci left: 3.028974e-01	ci right 3.157581e-01	k: 6186	n:20000
KS ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
SLC39A2   20000 perm   3 sec   (6297 perm/sec)   p_kst 8.080000e-02   p_cons 3.093000e-01   p_joint 1.040500e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A2.2_946_20000_0.0808_0.3093_0.10405.png
                gene_name: SLC39A2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000160
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 160 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 4422492: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000161> was used as the working directory.
Started at Wed Oct 24 18:08:29 2012
Results reported at Wed Oct 24 18:50:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000161.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000161.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 161  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000161.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2638.06 sec.
    Max Memory :      5314 MB
    Max Swap   :      7766 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
161
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 161
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 161: processing genes 14476 - 14566
Calculating significance of each gene.
Using projection method.
14476	SLC39A5	5.200317e-01
14477	SLC39A6	9.748294e-01
14478	SLC39A7	1
14479	SLC39A8	4.300587e-01
14480	SLC39A9	5.816350e-01
14481	SLC3A1	4.361767e-01
14482	SLC3A2	1
14483	SLC40A1	9.187440e-01
14484	SLC41A1	1
14485	SLC41A2	5.666714e-01
14486	SLC41A3	1
14487	SLC43A1	8.860527e-01
14488	SLC43A2	9.044248e-01
14489	SLC43A3	1
14490	SLC44A1	3.291808e-01
14491	SLC44A2	9.848172e-01
14492	SLC44A3	1
14493	SLC44A4	9.559781e-01
14494	SLC44A5	8.439238e-01
14495	SLC45A1	7.171719e-01
14496	SLC45A2	6.989752e-01
14497	SLC45A3	1
14498	SLC45A4	1
14499	SLC46A1	8.254922e-01
14500	SLC46A2	1
14501	SLC46A3	8.554572e-01
14502	SLC47A1	1
14503	SLC47A2	7.916444e-01
14504	SLC48A1	2.946296e-01
14505	SLC4A1	1
14506	SLC4A10	8.818749e-01
14507	SLC4A11	9.681368e-01
14508	SLC4A1AP	9.313205e-01
14509	SLC4A2	9.936908e-01
14510	SLC4A3	6.766138e-01
14511	SLC4A4	6.950949e-01
14512	SLC4A5	3.201105e-01
14513	SLC4A7	9.974027e-01
14514	SLC4A8	9.945715e-01
14515	SLC4A9	9.754014e-01
14516	SLC5A1	4.528624e-01
14517	SLC5A10	9.807484e-01
14518	SLC5A11	1.058896e-02
14519	SLC5A12	6.269951e-01
14520	SLC5A2	1
14521	SLC5A3	1
14522	SLC5A4	6.957151e-01
14523	SLC5A5	4.816874e-01
14524	SLC5A6	9.918843e-01
14525	SLC5A7	2.201561e-01
14526	SLC5A8	4.176216e-01
14527	SLC5A9	1
14528	SLC6A1	1
14529	SLC6A11	3.706871e-01
14530	SLC6A12	9.574834e-01
14531	SLC6A13	5.463120e-01
14532	SLC6A14	9.133389e-01
14533	SLC6A15	4.448257e-01
14534	SLC6A16	7.625840e-01
14535	SLC6A17	2.051572e-01
14536	SLC6A18	9.671220e-01
14537	SLC6A19	9.715827e-01
14538	SLC6A2	9.881659e-01
14539	SLC6A20	1
14540	SLC6A3	7.427452e-01
14541	SLC6A4	1
14542	SLC6A5	9.565343e-01
14543	SLC6A6	9.830991e-01
14544	SLC6A7	8.387281e-01
14545	SLC6A8	3.131080e-01
14546	SLC6A9	1
14547	SLC7A1	7.129528e-01
14548	SLC7A10	9.593922e-01
14549	SLC7A11	8.709776e-01
14550	SLC7A13	6.831312e-03
14551	SLC7A14	9.748272e-01
14552	SLC7A2	1
14553	SLC7A3	2.890260e-01
14554	SLC7A4	9.661786e-01
14555	SLC7A5	9.337026e-01
14556	SLC7A6	8.233611e-01
14557	SLC7A6OS	1
14558	SLC7A7	5.685015e-01
14559	SLC7A8	1
14560	SLC7A9	8.905370e-01
14561	SLC8A1	1
14562	SLC8A2	8.537999e-01
14563	SLC8A3	7.339025e-01
14564	SLC9A1	7.867335e-01
14565	SLC9A10	4.819411e-01
14566	SLC9A11	9.904154e-01
Done

Running MutSig 2:
Scatter job 161: processing genes 14476 - 14566
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
SLC8A1   10000 perm   2 sec   (4173 perm/sec)   p_kst 1.770000e-01   p_cons 1.014000e-01   p_joint 1.668000e-01

Joint ci ratio: 6.165079e-02	ci left: 1.629409e-01	ci right 1.733558e-01	k: 3362	n:20000
Cons ci ratio: 8.445036e-02	ci left: 9.312830e-02	ci right 1.013892e-01	k: 1944	n:20000
KS ci ratio: 5.741757e-02	ci left: 1.835451e-01	ci right 1.944454e-01	k: 3779	n:20000
SLC8A1   20000 perm   7 sec   (2864 perm/sec)   p_kst 1.889500e-01   p_cons 9.720000e-02   p_joint 1.681000e-01

Outputting figure to mutsig2_images.part000000000161/SLC8A1.26_3070_20000_0.18895_0.0972_0.1681.png
                gene_name: SLC8A1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 1 percent done.
SLC6A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
Cons ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
KS ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
SLC6A5   10000 perm   2 sec   (4809 perm/sec)   p_kst 4.287000e-01   p_cons 8.830000e-02   p_joint 2.653000e-01

Joint ci ratio: 5.025542e-02	ci left: 2.273536e-01	ci right 2.391241e-01	k: 4664	n:20000
Cons ci ratio: 8.674154e-02	ci left: 8.861709e-02	ci right 9.670178e-02	k: 1852	n:20000
KS ci ratio: 3.200520e-02	ci left: 4.216774e-01	ci right 4.354434e-01	k: 8571	n:20000
SLC6A5   20000 perm   5 sec   (4402 perm/sec)   p_kst 4.285500e-01   p_cons 9.260000e-02   p_joint 2.332000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A5.14_2458_20000_0.42855_0.0926_0.2332.png
                gene_name: SLC6A5
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 3 percent done.
SLC4A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
Cons ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
SLC4A10   10000 perm   2 sec   (4371 perm/sec)   p_kst 5.840000e-01   p_cons 1.607000e-01   p_joint 4.417000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A10.13_3546_10000_0.584_0.1607_0.4417.png
                gene_name: SLC4A10
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 4 percent done.
SLC9A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
KS ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
SLC9A11   10000 perm   2 sec   (4689 perm/sec)   p_kst 8.790000e-01   p_cons 8.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC9A11.13_3483_10000_0.879_0.8295_1.png
                gene_name: SLC9A11
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
SLC44A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
Cons ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
SLC44A5   10000 perm   2 sec   (4973 perm/sec)   p_kst 3.396000e-01   p_cons 8.560000e-01   p_joint 5.402000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A5.12_2363_10000_0.3396_0.856_0.5402.png
                gene_name: SLC44A5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 7 percent done.
SLC45A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
Cons ci ratio: 3.603702e-02	ci left: 5.320736e-01	ci right 5.517020e-01	k: 5419	n:10000
KS ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
SLC45A2   10000 perm   2 sec   (5241 perm/sec)   p_kst 5.360000e-01   p_cons 5.419000e-01   p_joint 7.099000e-01

Outputting figure to mutsig2_images.part000000000161/SLC45A2.11_1636_10000_0.536_0.5419_0.7099.png
                gene_name: SLC45A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 8 percent done.
SLC5A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
SLC5A11   10000 perm   2 sec   (4993 perm/sec)   p_kst 2.861000e-01   p_cons 1.169000e-01   p_joint 3.079000e-01

Joint ci ratio: 5.621045e-02	ci left: 1.900727e-01	ci right 2.011159e-01	k: 3911	n:20000
Cons ci ratio: 7.323477e-02	ci left: 1.206923e-01	ci right 1.299169e-01	k: 2505	n:20000
KS ci ratio: 4.300004e-02	ci left: 2.871945e-01	ci right 2.998656e-01	k: 5870	n:20000
SLC5A11   20000 perm   4 sec   (4493 perm/sec)   p_kst 2.935000e-01   p_cons 1.252500e-01   p_joint 1.955500e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A11.11_2088_20000_0.2935_0.12525_0.19555.png
                gene_name: SLC5A11
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 10 percent done.
SLC5A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
Cons ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
KS ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
SLC5A7   10000 perm   2 sec   (5389 perm/sec)   p_kst 2.009000e-01   p_cons 5.049000e-01   p_joint 3.212000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A7.10_1775_10000_0.2009_0.5049_0.3212.png
                gene_name: SLC5A7
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 11 percent done.
SLC5A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KS ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
SLC5A8   10000 perm   2 sec   (5407 perm/sec)   p_kst 1.339000e-01   p_cons 3.682000e-01   p_joint 2.420000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A8.10_1893_10000_0.1339_0.3682_0.242.png
                gene_name: SLC5A8
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 13 percent done.
SLC7A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
Cons ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
KS ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
SLC7A14   10000 perm   2 sec   (4984 perm/sec)   p_kst 9.705000e-01   p_cons 1.547000e-01   p_joint 4.438000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A14.10_2344_10000_0.9705_0.1547_0.4438.png
                gene_name: SLC7A14
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 14 percent done.
SLC4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
Cons ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
KS ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
SLC4A3   10000 perm   2 sec   (4853 perm/sec)   p_kst 8.801000e-01   p_cons 1.647000e-01   p_joint 4.482000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A3.9_3868_10000_0.8801_0.1647_0.4482.png
                gene_name: SLC4A3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 15 percent done.
SLC4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
SLC4A5   10000 perm   2 sec   (4565 perm/sec)   p_kst 3.838000e-01   p_cons 4.282000e-01   p_joint 4.413000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A5.9_3518_10000_0.3838_0.4282_0.4413.png
                gene_name: SLC4A5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
SLC6A19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 2.428074e-01	ci left: 2.231105e-02	ci right 2.856957e-02	k: 253	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
SLC6A19   10000 perm   2 sec   (5243 perm/sec)   p_kst 4.923000e-01   p_cons 2.530000e-02   p_joint 1.140000e-01

Joint ci ratio: 9.320713e-02	ci left: 7.745059e-02	ci right 8.507167e-02	k: 1624	n:20000
Cons ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
KS ci ratio: 2.820582e-02	ci left: 4.842982e-01	ci right 4.982043e-01	k: 9825	n:20000
SLC6A19   20000 perm   4 sec   (4744 perm/sec)   p_kst 4.912500e-01   p_cons 2.545000e-02   p_joint 8.120000e-02

Joint ci ratio: 7.240754e-02	ci left: 8.576834e-02	ci right 9.224485e-02	k: 2669	n:30000
Cons ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
KS ci ratio: 2.368912e-02	ci left: 4.715004e-01	ci right 4.828373e-01	k: 14315	n:30000
SLC6A19   30000 perm   7 sec   (4536 perm/sec)   p_kst 4.771667e-01   p_cons 2.560000e-02   p_joint 8.896667e-02

Joint ci ratio: 5.393567e-02	ci left: 1.134949e-01	ci right 1.198108e-01	k: 4665	n:40000
Cons ci ratio: 1.188520e-01	ci left: 2.489938e-02	ci right 2.806987e-02	k: 1058	n:40000
KS ci ratio: 2.028444e-02	ci left: 4.779169e-01	ci right 4.877356e-01	k: 19313	n:40000
SLC6A19   40000 perm   9 sec   (4387 perm/sec)   p_kst 4.828250e-01   p_cons 2.645000e-02   p_joint 1.166250e-01

Joint ci ratio: 5.741403e-02	ci left: 8.282628e-02	ci right 8.774200e-02	k: 4263	n:50000
Cons ci ratio: 1.079817e-01	ci left: 2.429164e-02	ci right 2.708379e-02	k: 1283	n:50000
KS ci ratio: 1.811061e-02	ci left: 4.793308e-01	ci right 4.881111e-01	k: 24186	n:50000
SLC6A19   50000 perm   12 sec   (4292 perm/sec)   p_kst 4.837200e-01   p_cons 2.566000e-02   p_joint 8.526000e-02

Joint ci ratio: 5.523212e-02	ci left: 7.530685e-02	ci right 7.960080e-02	k: 4646	n:60000
Cons ci ratio: 9.866558e-02	ci left: 2.436717e-02	ci right 2.691233e-02	k: 1537	n:60000
KS ci ratio: 1.652127e-02	ci left: 4.800605e-01	ci right 4.880744e-01	k: 29044	n:60000
SLC6A19   60000 perm   14 sec   (4202 perm/sec)   p_kst 4.840667e-01   p_cons 2.561667e-02   p_joint 7.743333e-02

Outputting figure to mutsig2_images.part000000000161/SLC6A19.9_1953_60000_0.48407_0.025617_0.077433.png
                gene_name: SLC6A19
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.080 

Current progress: 18 percent done.
SLC4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
SLC4A4   10000 perm   2 sec   (4381 perm/sec)   p_kst 6.778000e-01   p_cons 3.200000e-02   p_joint 3.126000e-01

Joint ci ratio: 4.819595e-02	ci left: 2.425228e-01	ci right 2.545504e-01	k: 4970	n:20000
Cons ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
KS ci ratio: 1.882656e-02	ci left: 6.778070e-01	ci right 6.907394e-01	k: 13686	n:20000
SLC4A4   20000 perm   5 sec   (3682 perm/sec)   p_kst 6.843000e-01   p_cons 3.085000e-02   p_joint 2.485000e-01

Joint ci ratio: 3.965806e-02	ci left: 2.407704e-01	ci right 2.505455e-01	k: 7369	n:30000
Cons ci ratio: 1.266021e-01	ci left: 2.900300e-02	ci right 3.295519e-02	k: 928	n:30000
KS ci ratio: 1.483828e-02	ci left: 6.941422e-01	ci right 7.045525e-01	k: 20981	n:30000
SLC4A4   30000 perm   8 sec   (3652 perm/sec)   p_kst 6.993667e-01   p_cons 3.093333e-02   p_joint 2.456333e-01

Joint ci ratio: 3.270695e-02	ci left: 2.598839e-01	ci right 2.685503e-01	k: 10568	n:40000
Cons ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
KS ci ratio: 1.283638e-02	ci left: 6.953065e-01	ci right 7.043145e-01	k: 27993	n:40000
SLC4A4   40000 perm   11 sec   (3613 perm/sec)   p_kst 6.998250e-01   p_cons 3.057500e-02   p_joint 2.642000e-01

Joint ci ratio: 3.125954e-02	ci left: 2.355058e-01	ci right 2.430045e-01	k: 11962	n:50000
Cons ci ratio: 9.887077e-02	ci left: 2.897101e-02	ci right 3.200382e-02	k: 1523	n:50000
KS ci ratio: 1.148575e-02	ci left: 6.956205e-01	ci right 7.036763e-01	k: 34983	n:50000
SLC4A4   50000 perm   14 sec   (3570 perm/sec)   p_kst 6.996600e-01   p_cons 3.046000e-02   p_joint 2.392400e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A4.8_3603_50000_0.69966_0.03046_0.23924.png
                gene_name: SLC4A4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 20 percent done.
SLC6A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
Cons ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
KS ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
SLC6A11   10000 perm   2 sec   (5382 perm/sec)   p_kst 3.558000e-01   p_cons 1.571000e-01   p_joint 3.790000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A11.8_1955_10000_0.3558_0.1571_0.379.png
                gene_name: SLC6A11
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
SLC6A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
Cons ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
KS ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
SLC6A15   10000 perm   2 sec   (5548 perm/sec)   p_kst 5.575000e-01   p_cons 4.429000e-01   p_joint 7.440000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A15.8_2351_10000_0.5575_0.4429_0.744.png
                gene_name: SLC6A15
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 23 percent done.
SLC7A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
Cons ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
KS ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
SLC7A13   10000 perm   2 sec   (5957 perm/sec)   p_kst 5.429000e-01   p_cons 2.379000e-01   p_joint 5.850000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A13.8_1429_10000_0.5429_0.2379_0.585.png
                gene_name: SLC7A13
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 24 percent done.
SLC39A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.906018e-02	ci left: 6.358318e-01	ci right 6.546835e-01	k: 6453	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
SLC39A6   10000 perm   2 sec   (5165 perm/sec)   p_kst 6.256000e-01   p_cons 6.453000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC39A6.7_2316_10000_0.6256_0.6453_1.png
                gene_name: SLC39A6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
SLC44A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
SLC44A1   10000 perm   2 sec   (5737 perm/sec)   p_kst 4.350000e-02   p_cons 6.940000e-02   p_joint 2.770000e-02

Joint ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
Cons ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
SLC44A1   20000 perm   4 sec   (5166 perm/sec)   p_kst 4.190000e-02   p_cons 6.965000e-02   p_joint 2.890000e-02

Joint ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
Cons ci ratio: 8.178232e-02	ci left: 6.821689e-02	ci right 7.406650e-02	k: 2133	n:30000
KS ci ratio: 1.052010e-01	ci left: 4.190172e-02	ci right 4.658706e-02	k: 1326	n:30000
SLC44A1   30000 perm   6 sec   (4926 perm/sec)   p_kst 4.420000e-02   p_cons 7.110000e-02   p_joint 3.153333e-02

Joint ci ratio: 1.273883e-01	ci left: 2.165006e-02	ci right 2.461973e-02	k: 924	n:40000
Cons ci ratio: 7.069661e-02	ci left: 6.884612e-02	ci right 7.391631e-02	k: 2854	n:40000
KS ci ratio: 9.303065e-02	ci left: 4.051945e-02	ci right 4.449732e-02	k: 1699	n:40000
SLC44A1   40000 perm   8 sec   (4782 perm/sec)   p_kst 4.247500e-02   p_cons 7.135000e-02   p_joint 2.310000e-02

Joint ci ratio: 1.082851e-01	ci left: 2.415534e-02	ci right 2.694012e-02	k: 1276	n:50000
Cons ci ratio: 6.304071e-02	ci left: 6.951269e-02	ci right 7.405718e-02	k: 3588	n:50000
KS ci ratio: 8.272265e-02	ci left: 4.119928e-02	ci right 4.477402e-02	k: 2148	n:50000
SLC44A1   50000 perm   11 sec   (4665 perm/sec)   p_kst 4.296000e-02   p_cons 7.176000e-02   p_joint 2.552000e-02

Joint ci ratio: 8.087075e-02	ci left: 3.615733e-02	ci right 3.922093e-02	k: 2260	n:60000
Cons ci ratio: 5.783653e-02	ci left: 6.905612e-02	ci right 7.318548e-02	k: 4266	n:60000
KS ci ratio: 7.599062e-02	ci left: 4.085062e-02	ci right 4.409383e-02	k: 2547	n:60000
SLC44A1   60000 perm   13 sec   (4545 perm/sec)   p_kst 4.245000e-02   p_cons 7.110000e-02   p_joint 3.766667e-02

Outputting figure to mutsig2_images.part000000000161/SLC44A1.7_2038_60000_0.04245_0.0711_0.037667.png
                gene_name: SLC44A1
               theta_stop: 0.081 
                    nperm: 60000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 27 percent done.
SLC8A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
Cons ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
SLC8A3   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.040000e-01   p_cons 7.920000e-02   p_joint 1.118000e-01

Joint ci ratio: 7.691171e-02	ci left: 1.105115e-01	ci right 1.194007e-01	k: 2298	n:20000
Cons ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
KS ci ratio: 5.499005e-02	ci left: 1.969986e-01	ci right 2.081880e-01	k: 4051	n:20000
SLC8A3   20000 perm   4 sec   (4854 perm/sec)   p_kst 2.025500e-01   p_cons 8.075000e-02   p_joint 1.149000e-01

Outputting figure to mutsig2_images.part000000000161/SLC8A3.7_2923_20000_0.20255_0.08075_0.1149.png
                gene_name: SLC8A3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 28 percent done.
SLC9A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
SLC9A10   10000 perm   2 sec   (5153 perm/sec)   p_kst 3.810000e-01   p_cons 3.037000e-01   p_joint 3.404000e-01

Outputting figure to mutsig2_images.part000000000161/SLC9A10.7_3646_10000_0.381_0.3037_0.3404.png
                gene_name: SLC9A10
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 30 percent done.
SLC45A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
KS ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
SLC45A1   10000 perm   2 sec   (5596 perm/sec)   p_kst 6.470000e-01   p_cons 7.548000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC45A1.6_2279_10000_0.647_0.7548_1.png
                gene_name: SLC45A1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
SLC4A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
Cons ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
KS ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
SLC4A8   10000 perm   2 sec   (4933 perm/sec)   p_kst 7.910000e-01   p_cons 1.739000e-01   p_joint 4.658000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A8.6_3436_10000_0.791_0.1739_0.4658.png
                gene_name: SLC4A8
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 32 percent done.
SLC5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
Cons ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
KS ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
SLC5A1   10000 perm   2 sec   (5643 perm/sec)   p_kst 3.084000e-01   p_cons 2.483000e-01   p_joint 3.640000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A1.6_2055_10000_0.3084_0.2483_0.364.png
                gene_name: SLC5A1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 34 percent done.
SLC6A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
SLC6A17   10000 perm   2 sec   (5122 perm/sec)   p_kst 4.291000e-01   p_cons 8.895000e-01   p_joint 6.052000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A17.6_2228_10000_0.4291_0.8895_0.6052.png
                gene_name: SLC6A17
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
SLC6A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
SLC6A18   10000 perm   2 sec   (5399 perm/sec)   p_kst 9.614000e-01   p_cons 1.586000e-01   p_joint 4.621000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A18.6_1935_10000_0.9614_0.1586_0.4621.png
                gene_name: SLC6A18
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 37 percent done.
SLC3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
SLC3A1   10000 perm   2 sec   (5959 perm/sec)   p_kst 9.732000e-01   p_cons 6.942000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC3A1.5_2098_10000_0.9732_0.6942_1.png
                gene_name: SLC3A1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
SLC5A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
Cons ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
KS ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
SLC5A12   10000 perm   2 sec   (5492 perm/sec)   p_kst 4.953000e-01   p_cons 2.221000e-01   p_joint 4.231000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A12.5_1917_10000_0.4953_0.2221_0.4231.png
                gene_name: SLC5A12
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 39 percent done.
SLC5A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
SLC5A4   10000 perm   2 sec   (5790 perm/sec)   p_kst 9.758000e-01   p_cons 5.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A4.5_2040_10000_0.9758_0.5615_1.png
                gene_name: SLC5A4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
SLC6A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
KS ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
SLC6A16   10000 perm   2 sec   (5410 perm/sec)   p_kst 2.199000e-01   p_cons 6.370000e-02   p_joint 1.084000e-01

Joint ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
Cons ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
KS ci ratio: 4.992747e-02	ci left: 2.296828e-01	ci right 2.414942e-01	k: 4711	n:20000
SLC6A16   20000 perm   4 sec   (4916 perm/sec)   p_kst 2.355500e-01   p_cons 5.905000e-02   p_joint 1.065500e-01

Joint ci ratio: 6.554150e-02	ci left: 1.030309e-01	ci right 1.100455e-01	k: 3195	n:30000
Cons ci ratio: 9.011304e-02	ci left: 5.665347e-02	ci right 6.203226e-02	k: 1779	n:30000
KS ci ratio: 4.089823e-02	ci left: 2.296156e-01	ci right 2.392359e-01	k: 7032	n:30000
SLC6A16   30000 perm   6 sec   (4711 perm/sec)   p_kst 2.344000e-01   p_cons 5.930000e-02   p_joint 1.065000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A16.5_2255_30000_0.2344_0.0593_0.1065.png
                gene_name: SLC6A16
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 42 percent done.
SLC6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
Cons ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
KS ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
SLC6A2   10000 perm   2 sec   (5527 perm/sec)   p_kst 3.200000e-01   p_cons 5.901000e-01   p_joint 5.637000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A2.5_2062_10000_0.32_0.5901_0.5637.png
                gene_name: SLC6A2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 44 percent done.
SLC6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
Cons ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
KS ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
SLC6A6   10000 perm   2 sec   (5852 perm/sec)   p_kst 3.376000e-01   p_cons 8.100000e-02   p_joint 2.438000e-01

Joint ci ratio: 6.027681e-02	ci left: 1.692626e-01	ci right 1.798322e-01	k: 3490	n:20000
Cons ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
KS ci ratio: 3.881800e-02	ci left: 3.310949e-01	ci right 3.442523e-01	k: 6753	n:20000
SLC6A6   20000 perm   4 sec   (5209 perm/sec)   p_kst 3.376500e-01   p_cons 8.010000e-02   p_joint 1.745000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A6.5_1919_20000_0.33765_0.0801_0.1745.png
                gene_name: SLC6A6
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 45 percent done.
SLC39A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
SLC39A5   10000 perm   2 sec   (5917 perm/sec)   p_kst 1.100000e-03   p_cons 8.881000e-01   p_joint 1.090000e-02

Joint ci ratio: 1.725682e-01	ci left: 2.297630e-02	ci right 2.736323e-02	k: 502	n:20000
Cons ci ratio: 9.860063e-03	ci left: 8.832427e-01	ci right 8.920442e-01	k: 17754	n:20000
KS ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
SLC39A5   20000 perm   4 sec   (5309 perm/sec)   p_kst 9.500000e-04   p_cons 8.877000e-01   p_joint 2.510000e-02

Joint ci ratio: 1.537792e-01	ci left: 1.956769e-02	ci right 2.285927e-02	k: 635	n:30000
Cons ci ratio: 8.305213e-03	ci left: 8.776202e-01	ci right 8.849725e-01	k: 26440	n:30000
KS ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
SLC39A5   30000 perm   6 sec   (5082 perm/sec)   p_kst 8.333333e-04   p_cons 8.813333e-01   p_joint 2.116667e-02

Joint ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
Cons ci ratio: 7.244154e-03	ci left: 8.765983e-01	ci right 8.829964e-01	k: 35193	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
SLC39A5   40000 perm   8 sec   (4927 perm/sec)   p_kst 8.250000e-04   p_cons 8.798250e-01   p_joint 1.392500e-02

Joint ci ratio: 1.835442e-01	ci left: 8.209900e-03	ci right 9.887844e-03	k: 451	n:50000
Cons ci ratio: 6.480679e-03	ci left: 8.768973e-01	ci right 8.826185e-01	k: 43989	n:50000
KS ci ratio: 5.840902e-01	ci left: 6.394799e-04	ci right 1.181181e-03	k: 44	n:50000
SLC39A5   50000 perm   10 sec   (4817 perm/sec)   p_kst 8.800000e-04   p_cons 8.797800e-01   p_joint 9.020000e-03

Joint ci ratio: 1.903761e-01	ci left: 6.348493e-03	ci right 7.699852e-03	k: 420	n:60000
Cons ci ratio: 5.935447e-03	ci left: 8.764479e-01	ci right 8.816820e-01	k: 52745	n:60000
KS ci ratio: 5.331999e-01	ci left: 6.617451e-04	ci right 1.155265e-03	k: 53	n:60000
SLC39A5   60000 perm   13 sec   (4719 perm/sec)   p_kst 8.833333e-04   p_cons 8.790833e-01   p_joint 7.000000e-03

Joint ci ratio: 1.927895e-01	ci left: 5.305278e-03	ci right 6.450550e-03	k: 410	n:70000
Cons ci ratio: 5.486942e-03	ci left: 8.769646e-01	ci right 8.818039e-01	k: 61558	n:70000
KS ci ratio: 4.936478e-01	ci left: 6.791374e-04	ci right 1.135304e-03	k: 62	n:70000
SLC39A5   70000 perm   15 sec   (4623 perm/sec)   p_kst 8.857143e-04   p_cons 8.794000e-01   p_joint 5.857143e-03

Joint ci ratio: 2.019517e-01	ci left: 4.214097e-03	ci right 5.172367e-03	k: 374	n:80000
Cons ci ratio: 4.946879e-03	ci left: 8.847859e-01	ci right 8.891860e-01	k: 70960	n:80000
KS ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
SLC39A5   80000 perm   18 sec   (4527 perm/sec)   p_kst 9.250000e-04   p_cons 8.870000e-01   p_joint 4.675000e-03

Joint ci ratio: 1.859959e-01	ci left: 4.454259e-03	ci right 5.378095e-03	k: 441	n:90000
Cons ci ratio: 4.838996e-03	ci left: 8.772546e-01	ci right 8.815209e-01	k: 79146	n:90000
KS ci ratio: 4.380721e-01	ci left: 6.950046e-04	ci right 1.093855e-03	k: 79	n:90000
SLC39A5   90000 perm   20 sec   (4441 perm/sec)   p_kst 8.777778e-04   p_cons 8.794000e-01   p_joint 4.900000e-03

Joint ci ratio: 1.817547e-01	ci left: 4.209118e-03	ci right 5.060007e-03	k: 462	n:100000
Cons ci ratio: 4.591962e-03	ci left: 8.773051e-01	ci right 8.813528e-01	k: 87934	n:100000
KS ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
SLC39A5   100000 perm   23 sec   (4366 perm/sec)   p_kst 8.800000e-04   p_cons 8.793400e-01   p_joint 4.620000e-03

Joint ci ratio: 1.766919e-01	ci left: 4.060887e-03	ci right 4.856497e-03	k: 489	n:110000
Cons ci ratio: 4.383019e-03	ci left: 8.771680e-01	ci right 8.810301e-01	k: 96702	n:110000
KS ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
SLC39A5   110000 perm   26 sec   (4280 perm/sec)   p_kst 8.636364e-04   p_cons 8.791091e-01   p_joint 4.445455e-03

Joint ci ratio: 1.994601e-01	ci left: 2.888343e-03	ci right 3.536033e-03	k: 384	n:120000
Cons ci ratio: 4.199883e-03	ci left: 8.770744e-01	ci right 8.807740e-01	k: 105472	n:120000
KS ci ratio: 3.718963e-01	ci left: 7.534469e-04	ci right 1.104727e-03	k: 110	n:120000
SLC39A5   120000 perm   29 sec   (4207 perm/sec)   p_kst 9.166667e-04   p_cons 8.789333e-01   p_joint 3.200000e-03

Joint ci ratio: 2.000066e-01	ci left: 2.651514e-03	ci right 3.247923e-03	k: 382	n:130000
Cons ci ratio: 4.042012e-03	ci left: 8.767814e-01	ci right 8.803402e-01	k: 114214	n:130000
KS ci ratio: 3.653788e-01	ci left: 7.234062e-04	ci right 1.053359e-03	k: 114	n:130000
SLC39A5   130000 perm   31 sec   (4139 perm/sec)   p_kst 8.769231e-04   p_cons 8.785692e-01   p_joint 2.938462e-03

Joint ci ratio: 1.916764e-01	ci left: 2.693079e-03	ci right 3.270668e-03	k: 416	n:140000
Cons ci ratio: 3.893110e-03	ci left: 8.769497e-01	ci right 8.803775e-01	k: 123014	n:140000
KS ci ratio: 3.576907e-01	ci left: 7.042034e-04	ci right 1.017067e-03	k: 119	n:140000
SLC39A5   140000 perm   34 sec   (4073 perm/sec)   p_kst 8.500000e-04   p_cons 8.786714e-01   p_joint 2.971429e-03

Joint ci ratio: 1.947638e-01	ci left: 2.431033e-03	ci right 2.961813e-03	k: 403	n:150000
Cons ci ratio: 3.757536e-03	ci left: 8.772115e-01	ci right 8.805205e-01	k: 131831	n:150000
KS ci ratio: 3.490735e-01	ci left: 6.937055e-04	ci right 9.927998e-04	k: 125	n:150000
SLC39A5   150000 perm   37 sec   (4012 perm/sec)   p_kst 8.333333e-04   p_cons 8.788733e-01   p_joint 2.686667e-03

Joint ci ratio: 1.928751e-01	ci left: 2.326655e-03	ci right 2.829140e-03	k: 411	n:160000
Cons ci ratio: 3.638934e-03	ci left: 8.772223e-01	ci right 8.804265e-01	k: 140613	n:160000
KS ci ratio: 3.384935e-01	ci left: 6.960332e-04	ci right 9.850494e-04	k: 133	n:160000
SLC39A5   160000 perm   41 sec   (3950 perm/sec)   p_kst 8.312500e-04   p_cons 8.788312e-01   p_joint 2.568750e-03

Joint ci ratio: 1.892411e-01	ci left: 2.279404e-03	ci right 2.761341e-03	k: 427	n:170000
Cons ci ratio: 3.527192e-03	ci left: 8.774581e-01	ci right 8.805643e-01	k: 149433	n:170000
KS ci ratio: 3.323531e-01	ci left: 6.820241e-04	ci right 9.589866e-04	k: 138	n:170000
SLC39A5   170000 perm   44 sec   (3890 perm/sec)   p_kst 8.117647e-04   p_cons 8.790176e-01   p_joint 2.511765e-03

Joint ci ratio: 1.803871e-01	ci left: 2.380623e-03	ci right 2.857843e-03	k: 470	n:180000
Cons ci ratio: 3.429350e-03	ci left: 8.774063e-01	ci right 8.804259e-01	k: 158206	n:180000
KS ci ratio: 3.410661e-01	ci left: 6.085281e-04	ci right 8.635522e-04	k: 131	n:180000
SLC39A5   180000 perm   47 sec   (3833 perm/sec)   p_kst 7.277778e-04   p_cons 8.789222e-01   p_joint 2.611111e-03

Joint ci ratio: 1.464260e-01	ci left: 3.482664e-03	ci right 4.037909e-03	k: 713	n:190000
Cons ci ratio: 3.337983e-03	ci left: 8.774405e-01	ci right 8.803795e-01	k: 166994	n:190000
KS ci ratio: 3.014035e-01	ci left: 7.556043e-04	ci right 1.028416e-03	k: 168	n:190000
SLC39A5   190000 perm   50 sec   (3773 perm/sec)   p_kst 8.842105e-04   p_cons 8.789158e-01   p_joint 3.752632e-03

Joint ci ratio: 1.160763e-01	ci left: 5.340754e-03	ci right 6.003697e-03	k: 1133	n:200000
Cons ci ratio: 3.255002e-03	ci left: 8.773768e-01	ci right 8.802422e-01	k: 175763	n:200000
KS ci ratio: 2.953503e-01	ci left: 7.502043e-04	ci right 1.014608e-03	k: 175	n:200000
SLC39A5   200000 perm   54 sec   (3718 perm/sec)   p_kst 8.750000e-04   p_cons 8.788150e-01   p_joint 5.665000e-03

Joint ci ratio: 1.139400e-01	ci left: 5.285295e-03	ci right 5.928467e-03	k: 1176	n:210000
Cons ci ratio: 3.176566e-03	ci left: 8.774109e-01	ci right 8.802072e-01	k: 184551	n:210000
KS ci ratio: 2.896478e-01	ci left: 7.453680e-04	ci right 1.002065e-03	k: 182	n:210000
SLC39A5   210000 perm   57 sec   (3666 perm/sec)   p_kst 8.666667e-04   p_cons 8.788143e-01   p_joint 5.600000e-03

Joint ci ratio: 1.113225e-01	ci left: 5.292430e-03	ci right 5.920704e-03	k: 1232	n:220000
Cons ci ratio: 3.102480e-03	ci left: 8.775158e-01	ci right 8.802470e-01	k: 193355	n:220000
KS ci ratio: 2.842632e-01	ci left: 7.410159e-04	ci right 9.906192e-04	k: 189	n:220000
SLC39A5   220000 perm   61 sec   (3612 perm/sec)   p_kst 8.590909e-04   p_cons 8.788864e-01   p_joint 5.600000e-03

Joint ci ratio: 1.148043e-01	ci left: 4.753831e-03	ci right 5.337011e-03	k: 1159	n:230000
Cons ci ratio: 3.038983e-03	ci left: 8.772147e-01	ci right 8.798888e-01	k: 202068	n:230000
KS ci ratio: 2.729964e-01	ci left: 7.735065e-04	ci right 1.021958e-03	k: 205	n:230000
SLC39A5   230000 perm   65 sec   (3561 perm/sec)   p_kst 8.913043e-04   p_cons 8.785565e-01   p_joint 5.039130e-03

Joint ci ratio: 1.146180e-01	ci left: 4.571918e-03	ci right 5.131809e-03	k: 1163	n:240000
Cons ci ratio: 2.977352e-03	ci left: 8.770732e-01	ci right 8.796926e-01	k: 210813	n:240000
KS ci ratio: 2.716847e-01	ci left: 7.490401e-04	ci right 9.882791e-04	k: 207	n:240000
SLC39A5   240000 perm   68 sec   (3513 perm/sec)   p_kst 8.625000e-04   p_cons 8.783875e-01   p_joint 4.845833e-03

Joint ci ratio: 1.190790e-01	ci left: 4.058911e-03	ci right 4.576684e-03	k: 1078	n:250000
Cons ci ratio: 2.916370e-03	ci left: 8.771607e-01	ci right 8.797265e-01	k: 219612	n:250000
KS ci ratio: 2.653796e-01	ci left: 7.563864e-04	ci right 9.914337e-04	k: 217	n:250000
SLC39A5   250000 perm   72 sec   (3465 perm/sec)   p_kst 8.680000e-04   p_cons 8.784480e-01   p_joint 4.312000e-03

Joint ci ratio: 1.246645e-01	ci left: 3.552218e-03	ci right 4.028179e-03	k: 984	n:260000
Cons ci ratio: 2.858987e-03	ci left: 8.772419e-01	ci right 8.797573e-01	k: 228411	n:260000
KS ci ratio: 2.618027e-01	ci left: 7.488464e-04	ci right 9.779005e-04	k: 223	n:260000
SLC39A5   260000 perm   76 sec   (3420 perm/sec)   p_kst 8.576923e-04   p_cons 8.785038e-01   p_joint 3.784615e-03

Joint ci ratio: 1.221476e-01	ci left: 3.567821e-03	ci right 4.035522e-03	k: 1025	n:270000
Cons ci ratio: 2.808318e-03	ci left: 8.770534e-01	ci right 8.795236e-01	k: 237139	n:270000
KS ci ratio: 2.600697e-01	ci left: 7.314949e-04	ci right 9.535196e-04	k: 226	n:270000
SLC39A5   270000 perm   80 sec   (3375 perm/sec)   p_kst 8.370370e-04   p_cons 8.782926e-01   p_joint 3.796296e-03

Joint ci ratio: 1.250003e-01	ci left: 3.281160e-03	ci right 3.722072e-03	k: 979	n:280000
Cons ci ratio: 2.757572e-03	ci left: 8.770869e-01	ci right 8.795124e-01	k: 245925	n:280000
KS ci ratio: 2.572535e-01	ci left: 7.220691e-04	ci right 9.384784e-04	k: 231	n:280000
SLC39A5   280000 perm   84 sec   (3332 perm/sec)   p_kst 8.250000e-04   p_cons 8.783036e-01   p_joint 3.496429e-03

Joint ci ratio: 1.221040e-01	ci left: 3.325081e-03	ci right 3.760795e-03	k: 1026	n:290000
Cons ci ratio: 2.709611e-03	ci left: 8.771080e-01	ci right 8.794913e-01	k: 254708	n:290000
KS ci ratio: 2.498236e-01	ci left: 7.423801e-04	ci right 9.574521e-04	k: 245	n:290000
SLC39A5   290000 perm   88 sec   (3292 perm/sec)   p_kst 8.448276e-04   p_cons 8.783034e-01   p_joint 3.537931e-03

Joint ci ratio: 7.972932e-02	ci left: 7.674513e-03	ci right 8.315046e-03	k: 2397	n:300000
Cons ci ratio: 2.662906e-03	ci left: 8.772218e-01	ci right 8.795642e-01	k: 263519	n:300000
KS ci ratio: 2.444177e-01	ci left: 7.520309e-04	ci right 9.644690e-04	k: 256	n:300000
SLC39A5   300000 perm   92 sec   (3252 perm/sec)   p_kst 8.533333e-04   p_cons 8.783967e-01   p_joint 7.990000e-03

Joint ci ratio: 8.019594e-02	ci left: 7.341542e-03	ci right 7.958038e-03	k: 2370	n:310000
Cons ci ratio: 2.618890e-03	ci left: 8.772994e-01	ci right 8.796032e-01	k: 272321	n:310000
KS ci ratio: 2.397964e-01	ci left: 7.580734e-04	ci right 9.675678e-04	k: 266	n:310000
SLC39A5   310000 perm   96 sec   (3213 perm/sec)   p_kst 8.580645e-04   p_cons 8.784548e-01   p_joint 7.645161e-03

Joint ci ratio: 7.968247e-02	ci left: 7.207038e-03	ci right 7.808183e-03	k: 2401	n:320000
Cons ci ratio: 2.578231e-03	ci left: 8.772689e-01	ci right 8.795367e-01	k: 281090	n:320000
KS ci ratio: 2.358541e-01	ci left: 7.608330e-04	ci right 9.671289e-04	k: 275	n:320000
SLC39A5   320000 perm   101 sec   (3173 perm/sec)   p_kst 8.593750e-04   p_cons 8.784063e-01   p_joint 7.503125e-03

Joint ci ratio: 8.161314e-02	ci left: 6.658985e-03	ci right 7.228513e-03	k: 2290	n:330000
Cons ci ratio: 2.538075e-03	ci left: 8.773531e-01	ci right 8.795857e-01	k: 289896	n:330000
KS ci ratio: 2.337477e-01	ci left: 7.520373e-04	ci right 9.538638e-04	k: 280	n:330000
SLC39A5   330000 perm   105 sec   (3133 perm/sec)   p_kst 8.484848e-04   p_cons 8.784727e-01   p_joint 6.939394e-03

Joint ci ratio: 8.114153e-02	ci left: 6.540912e-03	ci right 7.096956e-03	k: 2317	n:340000
Cons ci ratio: 2.501117e-03	ci left: 8.773145e-01	ci right 8.795144e-01	k: 298662	n:340000
KS ci ratio: 2.296958e-01	ci left: 7.576233e-04	ci right 9.569247e-04	k: 290	n:340000
SLC39A5   340000 perm   110 sec   (3095 perm/sec)   p_kst 8.529412e-04   p_cons 8.784176e-01   p_joint 6.814706e-03

Joint ci ratio: 7.994322e-02	ci left: 6.550002e-03	ci right 7.098212e-03	k: 2387	n:350000
Cons ci ratio: 2.466155e-03	ci left: 8.772410e-01	ci right 8.794099e-01	k: 307415	n:350000
KS ci ratio: 2.258475e-01	ci left: 7.629185e-04	ci right 9.597825e-04	k: 300	n:350000
SLC39A5   350000 perm   114 sec   (3060 perm/sec)   p_kst 8.571429e-04   p_cons 8.783286e-01   p_joint 6.820000e-03

Joint ci ratio: 7.920305e-02	ci left: 6.490562e-03	ci right 7.028535e-03	k: 2432	n:360000
Cons ci ratio: 2.431417e-03	ci left: 8.772778e-01	ci right 8.794161e-01	k: 316206	n:360000
KS ci ratio: 2.218298e-01	ci left: 7.705692e-04	ci right 9.653873e-04	k: 311	n:360000
SLC39A5   360000 perm   119 sec   (3027 perm/sec)   p_kst 8.638889e-04   p_cons 8.783500e-01   p_joint 6.755556e-03

Joint ci ratio: 8.091858e-02	ci left: 6.047577e-03	ci right 6.560201e-03	k: 2331	n:370000
Cons ci ratio: 2.398623e-03	ci left: 8.772667e-01	ci right 8.793761e-01	k: 324980	n:370000
KS ci ratio: 2.176821e-01	ci left: 7.803909e-04	ci right 9.735098e-04	k: 323	n:370000
SLC39A5   370000 perm   124 sec   (2994 perm/sec)   p_kst 8.729730e-04   p_cons 8.783243e-01   p_joint 6.300000e-03

Joint ci ratio: 8.412439e-02	ci left: 5.442487e-03	ci right 5.922993e-03	k: 2158	n:380000
Cons ci ratio: 2.367441e-03	ci left: 8.772272e-01	ci right 8.793091e-01	k: 333743	n:380000
KS ci ratio: 2.137587e-01	ci left: 7.897276e-04	ci right 9.811730e-04	k: 335	n:380000
SLC39A5   380000 perm   128 sec   (2962 perm/sec)   p_kst 8.815789e-04   p_cons 8.782711e-01   p_joint 5.678947e-03

Joint ci ratio: 8.494544e-02	ci left: 5.200002e-03	ci right 5.663803e-03	k: 2117	n:390000
Cons ci ratio: 2.337276e-03	ci left: 8.772055e-01	ci right 8.792607e-01	k: 342512	n:390000
KS ci ratio: 2.106467e-01	ci left: 7.937568e-04	ci right 9.830161e-04	k: 345	n:390000
SLC39A5   390000 perm   133 sec   (2928 perm/sec)   p_kst 8.846154e-04   p_cons 8.782359e-01   p_joint 5.428205e-03

Joint ci ratio: 8.794401e-02	ci left: 4.725069e-03	ci right 5.162150e-03	k: 1976	n:400000
Cons ci ratio: 2.309314e-03	ci left: 8.770846e-01	ci right 8.791149e-01	k: 351241	n:400000
KS ci ratio: 2.091420e-01	ci left: 7.857555e-04	ci right 9.715973e-04	k: 350	n:400000
SLC39A5   400000 perm   138 sec   (2898 perm/sec)   p_kst 8.750000e-04   p_cons 8.781025e-01   p_joint 4.940000e-03

Joint ci ratio: 7.772379e-02	ci left: 5.926125e-03	ci right 6.407724e-03	k: 2527	n:410000
Cons ci ratio: 2.281446e-03	ci left: 8.770530e-01	ci right 8.790587e-01	k: 360004	n:410000
KS ci ratio: 2.067988e-01	ci left: 7.850868e-04	ci right 9.684268e-04	k: 358	n:410000
SLC39A5   410000 perm   143 sec   (2867 perm/sec)   p_kst 8.731707e-04   p_cons 8.780585e-01   p_joint 6.163415e-03

Joint ci ratio: 7.683263e-02	ci left: 5.922788e-03	ci right 6.398350e-03	k: 2586	n:420000
Cons ci ratio: 2.254037e-03	ci left: 8.770733e-01	ci right 8.790548e-01	k: 368788	n:420000
KS ci ratio: 2.039771e-01	ci left: 7.889794e-04	ci right 9.704012e-04	k: 368	n:420000
SLC39A5   420000 perm   148 sec   (2836 perm/sec)   p_kst 8.761905e-04   p_cons 8.780667e-01   p_joint 6.157143e-03

Joint ci ratio: 7.806182e-02	ci left: 5.602569e-03	ci right 6.059943e-03	k: 2506	n:430000
Cons ci ratio: 2.226987e-03	ci left: 8.771511e-01	ci right 8.791089e-01	k: 377597	n:430000
KS ci ratio: 2.031544e-01	ci left: 7.772517e-04	ci right 9.551663e-04	k: 371	n:430000
SLC39A5   430000 perm   153 sec   (2806 perm/sec)   p_kst 8.627907e-04   p_cons 8.781326e-01   p_joint 5.827907e-03

Joint ci ratio: 7.976464e-02	ci left: 5.241271e-03	ci right 5.678916e-03	k: 2401	n:440000
Cons ci ratio: 2.201753e-03	ci left: 8.771411e-01	ci right 8.790767e-01	k: 386369	n:440000
KS ci ratio: 2.018035e-01	ci left: 7.703741e-04	ci right 9.453973e-04	k: 376	n:440000
SLC39A5   440000 perm   158 sec   (2777 perm/sec)   p_kst 8.545455e-04   p_cons 8.781114e-01   p_joint 5.456818e-03

Joint ci ratio: 7.889908e-02	ci left: 5.240240e-03	ci right 5.672832e-03	k: 2454	n:450000
Cons ci ratio: 2.175481e-03	ci left: 8.773167e-01	ci right 8.792295e-01	k: 395224	n:450000
KS ci ratio: 1.984107e-01	ci left: 7.806966e-04	ci right 9.547223e-04	k: 389	n:450000
SLC39A5   450000 perm   164 sec   (2748 perm/sec)   p_kst 8.644444e-04   p_cons 8.782756e-01   p_joint 5.453333e-03

Joint ci ratio: 7.799858e-02	ci left: 5.247804e-03	ci right 5.675852e-03	k: 2511	n:460000
Cons ci ratio: 2.152246e-03	ci left: 8.772732e-01	ci right 8.791655e-01	k: 403982	n:460000
KS ci ratio: 1.966540e-01	ci left: 7.781897e-04	ci right 9.499367e-04	k: 396	n:460000
SLC39A5   460000 perm   169 sec   (2721 perm/sec)   p_kst 8.608696e-04   p_cons 8.782217e-01   p_joint 5.458696e-03

Joint ci ratio: 7.744716e-02	ci left: 5.211252e-03	ci right 5.633178e-03	k: 2547	n:470000
Cons ci ratio: 2.129231e-03	ci left: 8.772829e-01	ci right 8.791550e-01	k: 412764	n:470000
KS ci ratio: 1.944621e-01	ci left: 7.798439e-04	ci right 9.498105e-04	k: 405	n:470000
SLC39A5   470000 perm   175 sec   (2690 perm/sec)   p_kst 8.617021e-04   p_cons 8.782213e-01   p_joint 5.419149e-03

Joint ci ratio: 7.686239e-02	ci left: 5.182364e-03	ci right 5.598641e-03	k: 2586	n:480000
Cons ci ratio: 2.106364e-03	ci left: 8.773509e-01	ci right 8.792029e-01	k: 421574	n:480000
KS ci ratio: 1.921103e-01	ci left: 7.834225e-04	ci right 9.518629e-04	k: 415	n:480000
SLC39A5   480000 perm   180 sec   (2663 perm/sec)   p_kst 8.645833e-04   p_cons 8.782792e-01   p_joint 5.387500e-03

Joint ci ratio: 7.597137e-02	ci left: 5.198714e-03	ci right 5.611249e-03	k: 2647	n:490000
Cons ci ratio: 2.083900e-03	ci left: 8.774489e-01	ci right 8.792813e-01	k: 430400	n:490000
KS ci ratio: 1.902895e-01	ci left: 7.829793e-04	ci right 9.495443e-04	k: 423	n:490000
SLC39A5   490000 perm   186 sec   (2638 perm/sec)   p_kst 8.632653e-04   p_cons 8.783673e-01   p_joint 5.402041e-03

Joint ci ratio: 7.828239e-02	ci left: 4.794601e-03	ci right 5.187169e-03	k: 2494	n:500000
Cons ci ratio: 2.064011e-03	ci left: 8.773485e-01	ci right 8.791632e-01	k: 439129	n:500000
KS ci ratio: 1.883014e-01	ci left: 7.844668e-04	ci right 9.494053e-04	k: 432	n:500000
SLC39A5   500000 perm   191 sec   (2613 perm/sec)   p_kst 8.640000e-04   p_cons 8.782580e-01   p_joint 4.988000e-03

Joint ci ratio: 8.155305e-02	ci left: 4.325831e-03	ci right 4.695519e-03	k: 2299	n:510000
Cons ci ratio: 2.043967e-03	ci left: 8.773268e-01	ci right 8.791238e-01	k: 447896	n:510000
KS ci ratio: 1.874385e-01	ci left: 7.765590e-04	ci right 9.390015e-04	k: 436	n:510000
SLC39A5   510000 perm   197 sec   (2587 perm/sec)   p_kst 8.549020e-04   p_cons 8.782275e-01   p_joint 4.507843e-03

Joint ci ratio: 8.178910e-02	ci left: 4.218143e-03	ci right 4.579721e-03	k: 2286	n:520000
Cons ci ratio: 2.024933e-03	ci left: 8.772598e-01	ci right 8.790399e-01	k: 456639	n:520000
KS ci ratio: 1.847104e-01	ci left: 7.854611e-04	ci right 9.471065e-04	k: 449	n:520000
SLC39A5   520000 perm   203 sec   (2563 perm/sec)   p_kst 8.634615e-04   p_cons 8.781519e-01   p_joint 4.396154e-03

Joint ci ratio: 8.120617e-02	ci left: 4.199549e-03	ci right 4.556846e-03	k: 2319	n:530000
Cons ci ratio: 2.005871e-03	ci left: 8.772540e-01	ci right 8.790173e-01	k: 465413	n:530000
KS ci ratio: 1.830902e-01	ci left: 7.850405e-04	ci right 9.450251e-04	k: 457	n:530000
SLC39A5   530000 perm   209 sec   (2539 perm/sec)   p_kst 8.622642e-04   p_cons 8.781377e-01   p_joint 4.375472e-03

Joint ci ratio: 8.096450e-02	ci left: 4.147175e-03	ci right 4.498916e-03	k: 2333	n:540000
Cons ci ratio: 1.987115e-03	ci left: 8.772727e-01	ci right 8.790195e-01	k: 474200	n:540000
KS ci ratio: 1.807372e-01	ci left: 7.917133e-04	ci right 9.507573e-04	k: 469	n:540000
SLC39A5   540000 perm   215 sec   (2507 perm/sec)   p_kst 8.685185e-04   p_cons 8.781481e-01   p_joint 4.320370e-03

Joint ci ratio: 8.014424e-02	ci left: 4.157288e-03	ci right 4.506147e-03	k: 2381	n:550000
Cons ci ratio: 1.969327e-03	ci left: 8.772416e-01	ci right 8.789726e-01	k: 482960	n:550000
KS ci ratio: 1.797841e-01	ci left: 7.859990e-04	ci right 9.429718e-04	k: 474	n:550000
SLC39A5   550000 perm   221 sec   (2483 perm/sec)   p_kst 8.618182e-04   p_cons 8.781091e-01   p_joint 4.329091e-03

Joint ci ratio: 8.036789e-02	ci left: 4.060294e-03	ci right 4.402009e-03	k: 2368	n:560000
Cons ci ratio: 1.951161e-03	ci left: 8.773047e-01	ci right 8.790199e-01	k: 491772	n:560000
KS ci ratio: 1.782891e-01	ci left: 7.856088e-04	ci right 9.410583e-04	k: 482	n:560000
SLC39A5   560000 perm   228 sec   (2461 perm/sec)   p_kst 8.607143e-04   p_cons 8.781643e-01   p_joint 4.228571e-03

Joint ci ratio: 7.988139e-02	ci left: 4.038917e-03	ci right 4.376679e-03	k: 2397	n:570000
Cons ci ratio: 1.933361e-03	ci left: 8.773798e-01	ci right 8.790795e-01	k: 500592	n:570000
KS ci ratio: 1.771923e-01	ci left: 7.818841e-04	ci right 9.355428e-04	k: 488	n:570000
SLC39A5   570000 perm   234 sec   (2439 perm/sec)   p_kst 8.561404e-04   p_cons 8.782316e-01   p_joint 4.205263e-03

Joint ci ratio: 8.008577e-02	ci left: 3.948997e-03	ci right 4.280124e-03	k: 2385	n:580000
Cons ci ratio: 1.916194e-03	ci left: 8.774351e-01	ci right 8.791197e-01	k: 509402	n:580000
KS ci ratio: 1.754076e-01	ci left: 7.848840e-04	ci right 9.374141e-04	k: 498	n:580000
SLC39A5   580000 perm   240 sec   (2416 perm/sec)   p_kst 8.586207e-04   p_cons 8.782793e-01   p_joint 4.112069e-03

Joint ci ratio: 7.955469e-02	ci left: 3.935218e-03	ci right 4.262901e-03	k: 2417	n:590000
Cons ci ratio: 1.900515e-03	ci left: 8.773713e-01	ci right 8.790420e-01	k: 518143	n:590000
KS ci ratio: 1.741904e-01	ci left: 7.829262e-04	ci right 9.339088e-04	k: 505	n:590000
SLC39A5   590000 perm   246 sec   (2394 perm/sec)   p_kst 8.559322e-04   p_cons 8.782085e-01   p_joint 4.096610e-03

Joint ci ratio: 7.914765e-02	ci left: 3.910469e-03	ci right 4.234348e-03	k: 2442	n:600000
Cons ci ratio: 1.884127e-03	ci left: 8.774333e-01	ci right 8.790897e-01	k: 526958	n:600000
KS ci ratio: 1.721604e-01	ci left: 7.890108e-04	ci right 9.392094e-04	k: 517	n:600000
SLC39A5   600000 perm   253 sec   (2371 perm/sec)   p_kst 8.616667e-04   p_cons 8.782633e-01   p_joint 4.070000e-03

Joint ci ratio: 8.190568e-02	ci left: 3.587718e-03	ci right 3.895713e-03	k: 2281	n:610000
Cons ci ratio: 1.869130e-03	ci left: 8.773816e-01	ci right 8.790247e-01	k: 535705	n:610000
KS ci ratio: 1.710090e-01	ci left: 7.870587e-04	ci right 9.357803e-04	k: 524	n:610000
SLC39A5   610000 perm   260 sec   (2347 perm/sec)   p_kst 8.590164e-04   p_cons 8.782049e-01   p_joint 3.739344e-03

Joint ci ratio: 8.130248e-02	ci left: 3.583571e-03	ci right 3.888837e-03	k: 2315	n:620000
Cons ci ratio: 1.854429e-03	ci left: 8.773380e-01	ci right 8.789681e-01	k: 544456	n:620000
KS ci ratio: 1.697209e-01	ci left: 7.867172e-04	ci right 9.341400e-04	k: 532	n:620000
SLC39A5   620000 perm   266 sec   (2328 perm/sec)   p_kst 8.580645e-04   p_cons 8.781548e-01   p_joint 3.733871e-03

Joint ci ratio: 8.074690e-02	ci left: 3.576452e-03	ci right 3.878933e-03	k: 2347	n:630000
Cons ci ratio: 1.839892e-03	ci left: 8.773166e-01	ci right 8.789338e-01	k: 553220	n:630000
KS ci ratio: 1.686175e-01	ci left: 7.848703e-04	ci right 9.308936e-04	k: 539	n:630000
SLC39A5   630000 perm   273 sec   (2308 perm/sec)   p_kst 8.555556e-04   p_cons 8.781270e-01   p_joint 3.725397e-03

Joint ci ratio: 8.040628e-02	ci left: 3.551189e-03	ci right 3.850206e-03	k: 2367	n:640000
Cons ci ratio: 1.825345e-03	ci left: 8.773367e-01	ci right 8.789411e-01	k: 562010	n:640000
KS ci ratio: 1.675353e-01	ci left: 7.830840e-04	ci right 9.277456e-04	k: 546	n:640000
SLC39A5   640000 perm   280 sec   (2288 perm/sec)   p_kst 8.531250e-04   p_cons 8.781406e-01   p_joint 3.698437e-03

Joint ci ratio: 7.985205e-02	ci left: 3.546307e-03	ci right 3.842759e-03	k: 2400	n:650000
Cons ci ratio: 1.811007e-03	ci left: 8.773716e-01	ci right 8.789635e-01	k: 570810	n:650000
KS ci ratio: 1.666243e-01	ci left: 7.798813e-04	ci right 9.230892e-04	k: 552	n:650000
SLC39A5   650000 perm   286 sec   (2270 perm/sec)   p_kst 8.492308e-04   p_cons 8.781692e-01   p_joint 3.692308e-03

Joint ci ratio: 7.958858e-02	ci left: 3.516332e-03	ci right 3.809264e-03	k: 2416	n:660000
Cons ci ratio: 1.797587e-03	ci left: 8.773356e-01	ci right 8.789156e-01	k: 579564	n:660000
KS ci ratio: 1.646991e-01	ci left: 7.869455e-04	ci right 9.296155e-04	k: 565	n:660000
SLC39A5   660000 perm   293 sec   (2249 perm/sec)   p_kst 8.560606e-04   p_cons 8.781273e-01   p_joint 3.660606e-03

Joint ci ratio: 7.589744e-02	ci left: 3.815120e-03	ci right 4.117552e-03	k: 2656	n:670000
Cons ci ratio: 1.784673e-03	ci left: 8.772753e-01	ci right 8.788438e-01	k: 588301	n:670000
KS ci ratio: 1.628391e-01	ci left: 7.938080e-04	ci right 9.359379e-04	k: 578	n:670000
SLC39A5   670000 perm   300 sec   (2232 perm/sec)   p_kst 8.626866e-04   p_cons 8.780612e-01   p_joint 3.964179e-03

Joint ci ratio: 7.874724e-02	ci left: 3.487865e-03	ci right 3.775213e-03	k: 2468	n:680000
Cons ci ratio: 1.771667e-03	ci left: 8.772610e-01	ci right 8.788181e-01	k: 597068	n:680000
KS ci ratio: 1.618638e-01	ci left: 7.920102e-04	ci right 9.328862e-04	k: 585	n:680000
SLC39A5   680000 perm   307 sec   (2214 perm/sec)   p_kst 8.602941e-04   p_cons 8.780412e-01   p_joint 3.629412e-03

Joint ci ratio: 7.827350e-02	ci left: 3.479940e-03	ci right 3.764832e-03	k: 2498	n:690000
Cons ci ratio: 1.758953e-03	ci left: 8.772458e-01	ci right 8.787916e-01	k: 605834	n:690000
KS ci ratio: 1.607702e-01	ci left: 7.916579e-04	ci right 9.314280e-04	k: 593	n:690000
SLC39A5   690000 perm   314 sec   (2195 perm/sec)   p_kst 8.594203e-04   p_cons 8.780203e-01   p_joint 3.620290e-03

Joint ci ratio: 7.773113e-02	ci left: 3.479251e-03	ci right 3.762024e-03	k: 2533	n:700000
Cons ci ratio: 1.746882e-03	ci left: 8.771852e-01	ci right 8.787203e-01	k: 614568	n:700000
KS ci ratio: 1.602321e-01	ci left: 7.858331e-04	ci right 9.240657e-04	k: 597	n:700000
SLC39A5   700000 perm   321 sec   (2178 perm/sec)   p_kst 8.528571e-04   p_cons 8.779543e-01   p_joint 3.618571e-03

Joint ci ratio: 7.721496e-02	ci left: 3.477207e-03	ci right 3.757853e-03	k: 2567	n:710000
Cons ci ratio: 1.734885e-03	ci left: 8.771475e-01	ci right 8.786720e-01	k: 623317	n:710000
KS ci ratio: 1.590398e-01	ci left: 7.869348e-04	ci right 9.242327e-04	k: 606	n:710000
SLC39A5   710000 perm   329 sec   (2161 perm/sec)   p_kst 8.535211e-04   p_cons 8.779113e-01   p_joint 3.615493e-03

Joint ci ratio: 7.678301e-02	ci left: 3.468414e-03	ci right 3.746714e-03	k: 2596	n:720000
Cons ci ratio: 1.723231e-03	ci left: 8.770984e-01	ci right 8.786125e-01	k: 632057	n:720000
KS ci ratio: 1.585188e-01	ci left: 7.813397e-04	ci right 9.171725e-04	k: 610	n:720000
SLC39A5   720000 perm   336 sec   (2144 perm/sec)   p_kst 8.472222e-04   p_cons 8.778569e-01   p_joint 3.605556e-03

Joint ci ratio: 7.815587e-02	ci left: 3.299991e-03	ci right 3.569726e-03	k: 2506	n:730000
Cons ci ratio: 1.711120e-03	ci left: 8.771372e-01	ci right 8.786407e-01	k: 640860	n:730000
KS ci ratio: 1.573640e-01	ci left: 7.824780e-04	ci right 9.174241e-04	k: 619	n:730000
SLC39A5   730000 perm   343 sec   (2128 perm/sec)   p_kst 8.479452e-04   p_cons 8.778904e-01   p_joint 3.432877e-03

Joint ci ratio: 8.169960e-02	ci left: 2.974613e-03	ci right 3.229301e-03	k: 2294	n:740000
Cons ci ratio: 1.700215e-03	ci left: 8.770543e-01	ci right 8.785481e-01	k: 649574	n:740000
KS ci ratio: 1.568593e-01	ci left: 7.770967e-04	ci right 9.106444e-04	k: 623	n:740000
SLC39A5   740000 perm   350 sec   (2112 perm/sec)   p_kst 8.418919e-04   p_cons 8.778027e-01   p_joint 3.100000e-03

Joint ci ratio: 8.139944e-02	ci left: 2.957155e-03	ci right 3.209374e-03	k: 2311	n:750000
Cons ci ratio: 1.688800e-03	ci left: 8.770647e-01	ci right 8.785484e-01	k: 658356	n:750000
KS ci ratio: 1.559870e-01	ci left: 7.757034e-04	ci right 9.082009e-04	k: 630	n:750000
SLC39A5   750000 perm   358 sec   (2096 perm/sec)   p_kst 8.400000e-04   p_cons 8.778080e-01   p_joint 3.081333e-03

Joint ci ratio: 8.073826e-02	ci left: 2.967232e-03	ci right 3.218158e-03	k: 2349	n:760000
Cons ci ratio: 1.677592e-03	ci left: 8.770774e-01	ci right 8.785513e-01	k: 667140	n:760000
KS ci ratio: 1.544041e-01	ci left: 7.819379e-04	ci right 9.140197e-04	k: 643	n:760000
SLC39A5   760000 perm   365 sec   (2079 perm/sec)   p_kst 8.460526e-04   p_cons 8.778158e-01   p_joint 3.090789e-03

Joint ci ratio: 8.017716e-02	ci left: 2.970691e-03	ci right 3.220083e-03	k: 2382	n:770000
Cons ci ratio: 1.666604e-03	ci left: 8.770898e-01	ci right 8.785541e-01	k: 675924	n:770000
KS ci ratio: 1.535719e-01	ci left: 7.805235e-04	ci right 9.115903e-04	k: 650	n:770000
SLC39A5   770000 perm   373 sec   (2063 perm/sec)   p_kst 8.441558e-04   p_cons 8.778234e-01   p_joint 3.093506e-03

Joint ci ratio: 7.150308e-02	ci left: 3.701178e-03	ci right 3.976886e-03	k: 2993	n:780000
Cons ci ratio: 1.656126e-03	ci left: 8.770634e-01	ci right 8.785184e-01	k: 684678	n:780000
KS ci ratio: 1.529858e-01	ci left: 7.766810e-04	ci right 9.065593e-04	k: 655	n:780000
SLC39A5   780000 perm   382 sec   (2040 perm/sec)   p_kst 8.397436e-04   p_cons 8.777923e-01   p_joint 3.837179e-03

Joint ci ratio: 7.120702e-02	ci left: 3.685408e-03	ci right 3.958757e-03	k: 3018	n:790000
Cons ci ratio: 1.645823e-03	ci left: 8.770402e-01	ci right 8.784861e-01	k: 693434	n:790000
KS ci ratio: 1.526377e-01	ci left: 7.705017e-04	ci right 8.990267e-04	k: 658	n:790000
SLC39A5   790000 perm   390 sec   (2025 perm/sec)   p_kst 8.329114e-04   p_cons 8.777646e-01   p_joint 3.820253e-03

Joint ci ratio: 7.090291e-02	ci left: 3.671262e-03	ci right 3.942351e-03	k: 3044	n:800000
Cons ci ratio: 1.635777e-03	ci left: 8.770089e-01	ci right 8.784459e-01	k: 702183	n:800000
KS ci ratio: 1.516059e-01	ci left: 7.716922e-04	ci right 8.994667e-04	k: 667	n:800000
SLC39A5   800000 perm   398 sec   (2008 perm/sec)   p_kst 8.337500e-04   p_cons 8.777287e-01   p_joint 3.805000e-03

Joint ci ratio: 7.069515e-02	ci left: 3.647765e-03	ci right 3.916297e-03	k: 3062	n:810000
Cons ci ratio: 1.625576e-03	ci left: 8.770229e-01	ci right 8.784509e-01	k: 710968	n:810000
KS ci ratio: 1.508179e-01	ci left: 7.704801e-04	ci right 8.973310e-04	k: 674	n:810000
SLC39A5   810000 perm   407 sec   (1989 perm/sec)   p_kst 8.320988e-04   p_cons 8.777383e-01   p_joint 3.780247e-03

Joint ci ratio: 7.022656e-02	ci left: 3.652399e-03	ci right 3.919418e-03	k: 3103	n:820000
Cons ci ratio: 1.615711e-03	ci left: 8.770170e-01	ci right 8.784364e-01	k: 719737	n:820000
KS ci ratio: 1.503734e-01	ci left: 7.657781e-04	ci right 8.914498e-04	k: 678	n:820000
SLC39A5   820000 perm   416 sec   (1973 perm/sec)   p_kst 8.268293e-04   p_cons 8.777280e-01   p_joint 3.784146e-03

Joint ci ratio: 6.986759e-02	ci left: 3.646273e-03	ci right 3.911426e-03	k: 3135	n:830000
Cons ci ratio: 1.606050e-03	ci left: 8.770077e-01	ci right 8.784186e-01	k: 728503	n:830000
KS ci ratio: 1.490617e-01	ci left: 7.704682e-04	ci right 8.957083e-04	k: 690	n:830000
SLC39A5   830000 perm   424 sec   (1958 perm/sec)   p_kst 8.313253e-04   p_cons 8.777145e-01   p_joint 3.777108e-03

Joint ci ratio: 6.964660e-02	ci left: 3.626258e-03	ci right 3.889087e-03	k: 3155	n:840000
Cons ci ratio: 1.595869e-03	ci left: 8.770917e-01	ci right 8.784937e-01	k: 737347	n:840000
KS ci ratio: 1.477836e-01	ci left: 7.750513e-04	ci right 8.998608e-04	k: 702	n:840000
SLC39A5   840000 perm   432 sec   (1944 perm/sec)   p_kst 8.357143e-04   p_cons 8.777940e-01   p_joint 3.755952e-03

Joint ci ratio: 6.971469e-02	ci left: 3.576657e-03	ci right 3.836155e-03	k: 3149	n:850000
Cons ci ratio: 1.586236e-03	ci left: 8.771255e-01	ci right 8.785190e-01	k: 746150	n:850000
KS ci ratio: 1.467435e-01	ci left: 7.772644e-04	ci right 9.014720e-04	k: 712	n:850000
SLC39A5   850000 perm   441 sec   (1929 perm/sec)   p_kst 8.376471e-04   p_cons 8.778235e-01   p_joint 3.704706e-03

Joint ci ratio: 6.329138e-02	ci left: 4.300117e-03	ci right 4.582307e-03	k: 3818	n:860000
Cons ci ratio: 1.576655e-03	ci left: 8.771747e-01	ci right 8.785599e-01	k: 754967	n:860000
KS ci ratio: 1.454233e-01	ci left: 7.827903e-04	ci right 9.066580e-04	k: 725	n:860000
SLC39A5   860000 perm   449 sec   (1916 perm/sec)   p_kst 8.430233e-04   p_cons 8.778686e-01   p_joint 4.439535e-03

Joint ci ratio: 6.464139e-02	ci left: 4.073101e-03	ci right 4.346308e-03	k: 3661	n:870000
Cons ci ratio: 1.567095e-03	ci left: 8.772436e-01	ci right 8.786205e-01	k: 763802	n:870000
KS ci ratio: 1.443338e-01	ci left: 7.859782e-04	ci right 9.093382e-04	k: 736	n:870000
SLC39A5   870000 perm   457 sec   (1903 perm/sec)   p_kst 8.459770e-04   p_cons 8.779333e-01   p_joint 4.208046e-03

Joint ci ratio: 6.423904e-02	ci left: 4.078246e-03	ci right 4.350033e-03	k: 3707	n:880000
Cons ci ratio: 1.557928e-03	ci left: 8.772802e-01	ci right 8.786491e-01	k: 772610	n:880000
KS ci ratio: 1.437500e-01	ci left: 7.836190e-04	ci right 9.060687e-04	k: 742	n:880000
SLC39A5   880000 perm   466 sec   (1890 perm/sec)   p_kst 8.431818e-04   p_cons 8.779659e-01   p_joint 4.212500e-03

Joint ci ratio: 6.647373e-02	ci left: 3.762725e-03	ci right 4.022543e-03	k: 3463	n:890000
Cons ci ratio: 1.548913e-03	ci left: 8.773171e-01	ci right 8.786782e-01	k: 781419	n:890000
KS ci ratio: 1.428872e-01	ci left: 7.845641e-04	ci right 9.063628e-04	k: 751	n:890000
SLC39A5   890000 perm   474 sec   (1877 perm/sec)   p_kst 8.438202e-04   p_cons 8.779989e-01   p_joint 3.891011e-03

Joint ci ratio: 6.608372e-02	ci left: 3.765717e-03	ci right 4.024158e-03	k: 3504	n:900000
Cons ci ratio: 1.540236e-03	ci left: 8.773276e-01	ci right 8.786810e-01	k: 790205	n:900000
KS ci ratio: 1.418533e-01	ci left: 7.876337e-04	ci right 9.089493e-04	k: 762	n:900000
SLC39A5   900000 perm   483 sec   (1864 perm/sec)   p_kst 8.466667e-04   p_cons 8.780056e-01   p_joint 3.893333e-03

Joint ci ratio: 6.572842e-02	ci left: 3.765406e-03	ci right 4.022383e-03	k: 3542	n:910000
Cons ci ratio: 1.531687e-03	ci left: 8.773401e-01	ci right 8.786860e-01	k: 798993	n:910000
KS ci ratio: 1.412990e-01	ci left: 7.853382e-04	ci right 9.057877e-04	k: 768	n:910000
SLC39A5   910000 perm   491 sec   (1852 perm/sec)   p_kst 8.439560e-04   p_cons 8.780143e-01   p_joint 3.892308e-03

Joint ci ratio: 6.606761e-02	ci left: 3.685987e-03	ci right 3.938892e-03	k: 3506	n:920000
Cons ci ratio: 1.523024e-03	ci left: 8.773883e-01	ci right 8.787267e-01	k: 807814	n:920000
KS ci ratio: 1.402989e-01	ci left: 7.883373e-04	ci right 9.083195e-04	k: 779	n:920000
SLC39A5   920000 perm   501 sec   (1837 perm/sec)   p_kst 8.467391e-04   p_cons 8.780587e-01   p_joint 3.810870e-03

Joint ci ratio: 6.585256e-02	ci left: 3.670675e-03	ci right 3.921678e-03	k: 3529	n:930000
Cons ci ratio: 1.514187e-03	ci left: 8.774808e-01	ci right 8.788115e-01	k: 816677	n:930000
KS ci ratio: 1.396737e-01	ci left: 7.871238e-04	ci right 9.063430e-04	k: 786	n:930000
SLC39A5   930000 perm   510 sec   (1824 perm/sec)   p_kst 8.451613e-04   p_cons 8.781473e-01   p_joint 3.794624e-03

Joint ci ratio: 6.546413e-02	ci left: 3.675573e-03	ci right 3.925372e-03	k: 3571	n:940000
Cons ci ratio: 1.506174e-03	ci left: 8.774753e-01	ci right 8.787990e-01	k: 825450	n:940000
KS ci ratio: 1.388818e-01	ci left: 7.879910e-04	ci right 9.066089e-04	k: 795	n:940000
SLC39A5   940000 perm   519 sec   (1812 perm/sec)   p_kst 8.457447e-04   p_cons 8.781383e-01   p_joint 3.798936e-03

Joint ci ratio: 6.508248e-02	ci left: 3.680372e-03	ci right 3.928984e-03	k: 3613	n:950000
Cons ci ratio: 1.498303e-03	ci left: 8.774679e-01	ci right 8.787846e-01	k: 834221	n:950000
KS ci ratio: 1.379318e-01	ci left: 7.908744e-04	ci right 9.090452e-04	k: 806	n:950000
SLC39A5   950000 perm   528 sec   (1800 perm/sec)   p_kst 8.484211e-04   p_cons 8.781274e-01   p_joint 3.803158e-03

Joint ci ratio: 5.949961e-02	ci left: 4.367089e-03	ci right 4.635914e-03	k: 4320	n:960000
Cons ci ratio: 1.490430e-03	ci left: 8.774783e-01	ci right 8.787881e-01	k: 843009	n:960000
KS ci ratio: 1.366671e-01	ci left: 7.977246e-04	ci right 9.157372e-04	k: 821	n:960000
SLC39A5   960000 perm   537 sec   (1788 perm/sec)   p_kst 8.552083e-04   p_cons 8.781344e-01   p_joint 4.500000e-03

Joint ci ratio: 5.958416e-02	ci left: 4.309876e-03	ci right 4.575570e-03	k: 4308	n:970000
Cons ci ratio: 1.482558e-03	ci left: 8.775062e-01	ci right 8.788091e-01	k: 851814	n:970000
KS ci ratio: 1.359250e-01	ci left: 7.984627e-04	ci right 9.158911e-04	k: 830	n:970000
SLC39A5   970000 perm   546 sec   (1776 perm/sec)   p_kst 8.556701e-04   p_cons 8.781588e-01   p_joint 4.441237e-03

Joint ci ratio: 5.924810e-02	ci left: 4.315156e-03	ci right 4.579623e-03	k: 4357	n:980000
Cons ci ratio: 1.475260e-03	ci left: 8.774680e-01	ci right 8.787645e-01	k: 860555	n:980000
KS ci ratio: 1.352754e-01	ci left: 7.982014e-04	ci right 9.149853e-04	k: 838	n:980000
SLC39A5   980000 perm   555 sec   (1765 perm/sec)   p_kst 8.551020e-04   p_cons 8.781173e-01   p_joint 4.445918e-03

Joint ci ratio: 6.110067e-02	ci left: 4.013868e-03	ci right 4.267834e-03	k: 4098	n:990000
Cons ci ratio: 1.467833e-03	ci left: 8.774651e-01	ci right 8.787550e-01	k: 869330	n:990000
KS ci ratio: 1.346351e-01	ci left: 7.979468e-04	ci right 9.140965e-04	k: 846	n:990000
SLC39A5   990000 perm   565 sec   (1753 perm/sec)   p_kst 8.545455e-04   p_cons 8.781111e-01   p_joint 4.139394e-03

Joint ci ratio: 6.182550e-02	ci left: 3.880181e-03	ci right 4.128705e-03	k: 4003	n:1000000
Cons ci ratio: 1.460531e-03	ci left: 8.774602e-01	ci right 8.787436e-01	k: 878103	n:1000000
KS ci ratio: 1.341609e-01	ci left: 7.957655e-04	ci right 9.111572e-04	k: 852	n:1000000
SLC39A5   1000000 perm   574 sec   (1742 perm/sec)   p_kst 8.520000e-04   p_cons 8.781030e-01   p_joint 4.003000e-03

Joint ci ratio: 6.180349e-02	ci left: 3.844686e-03	ci right 4.090845e-03	k: 4006	n:1010000
Cons ci ratio: 1.453323e-03	ci left: 8.774574e-01	ci right 8.787345e-01	k: 886878	n:1010000
KS ci ratio: 1.333813e-01	ci left: 7.974563e-04	ci right 9.123680e-04	k: 862	n:1010000
SLC39A5   1010000 perm   584 sec   (1731 perm/sec)   p_kst 8.534653e-04   p_cons 8.780970e-01   p_joint 3.966337e-03

Joint ci ratio: 6.172741e-02	ci left: 3.816644e-03	ci right 4.060696e-03	k: 4016	n:1020000
Cons ci ratio: 1.446254e-03	ci left: 8.774498e-01	ci right 8.787206e-01	k: 895648	n:1020000
KS ci ratio: 1.327673e-01	ci left: 7.972201e-04	ci right 9.115273e-04	k: 870	n:1020000
SLC39A5   1020000 perm   593 sec   (1720 perm/sec)   p_kst 8.529412e-04   p_cons 8.780863e-01   p_joint 3.937255e-03

Joint ci ratio: 6.182912e-02	ci left: 3.767160e-03	ci right 4.008459e-03	k: 4003	n:1030000
Cons ci ratio: 1.439502e-03	ci left: 8.774102e-01	ci right 8.786751e-01	k: 904385	n:1030000
KS ci ratio: 1.322371e-01	ci left: 7.960509e-04	ci right 9.096988e-04	k: 877	n:1030000
SLC39A5   1030000 perm   603 sec   (1709 perm/sec)   p_kst 8.514563e-04   p_cons 8.780437e-01   p_joint 3.886408e-03

Joint ci ratio: 6.153018e-02	ci left: 3.767859e-03	ci right 4.007994e-03	k: 4042	n:1040000
Cons ci ratio: 1.432105e-03	ci left: 8.774822e-01	ci right 8.787407e-01	k: 913237	n:1040000
KS ci ratio: 1.319372e-01	ci left: 7.921156e-04	ci right 9.049250e-04	k: 881	n:1040000
SLC39A5   1040000 perm   613 sec   (1698 perm/sec)   p_kst 8.471154e-04   p_cons 8.781125e-01   p_joint 3.886538e-03

Joint ci ratio: 5.395536e-02	ci left: 4.866918e-03	ci right 5.137728e-03	k: 5251	n:1050000
Cons ci ratio: 1.424819e-03	ci left: 8.775529e-01	ci right 8.788050e-01	k: 922089	n:1050000
KS ci ratio: 1.310485e-01	ci left: 7.956243e-04	ci right 9.081109e-04	k: 893	n:1050000
SLC39A5   1050000 perm   622 sec   (1687 perm/sec)   p_kst 8.504762e-04   p_cons 8.781800e-01   p_joint 5.000952e-03

Joint ci ratio: 5.366984e-02	ci left: 4.873124e-03	ci right 5.142799e-03	k: 5307	n:1060000
Cons ci ratio: 1.418131e-03	ci left: 8.775485e-01	ci right 8.787947e-01	k: 930863	n:1060000
KS ci ratio: 1.303938e-01	ci left: 7.963314e-04	ci right 9.083118e-04	k: 902	n:1060000
SLC39A5   1060000 perm   632 sec   (1677 perm/sec)   p_kst 8.509434e-04   p_cons 8.781726e-01   p_joint 5.006604e-03

Joint ci ratio: 5.433344e-02	ci left: 4.709559e-03	ci right 4.973506e-03	k: 5179	n:1070000
Cons ci ratio: 1.411672e-03	ci left: 8.775236e-01	ci right 8.787641e-01	k: 939615	n:1070000
KS ci ratio: 1.300345e-01	ci left: 7.934096e-04	ci right 9.046481e-04	k: 907	n:1070000
SLC39A5   1070000 perm   642 sec   (1666 perm/sec)   p_kst 8.476636e-04   p_cons 8.781449e-01   p_joint 4.840187e-03

Joint ci ratio: 5.158467e-02	ci left: 5.181295e-03	ci right 5.456554e-03	k: 5743	n:1080000
Cons ci ratio: 1.405155e-03	ci left: 8.775214e-01	ci right 8.787562e-01	k: 948391	n:1080000
KS ci ratio: 1.290431e-01	ci left: 7.986063e-04	ci right 9.096543e-04	k: 921	n:1080000
SLC39A5   1080000 perm   652 sec   (1657 perm/sec)   p_kst 8.527778e-04   p_cons 8.781398e-01   p_joint 5.317593e-03

Joint ci ratio: 5.137506e-02	ci left: 5.176324e-03	ci right 5.450168e-03	k: 5790	n:1090000
Cons ci ratio: 1.398984e-03	ci left: 8.774797e-01	ci right 8.787091e-01	k: 957124	n:1090000
KS ci ratio: 1.284179e-01	ci left: 7.992706e-04	ci right 9.098315e-04	k: 930	n:1090000
SLC39A5   1090000 perm   662 sec   (1647 perm/sec)   p_kst 8.532110e-04   p_cons 8.780954e-01   p_joint 5.311927e-03

Joint ci ratio: 5.175957e-02	ci left: 5.052982e-03	ci right 5.322361e-03	k: 5705	n:1100000
Cons ci ratio: 1.392374e-03	ci left: 8.775190e-01	ci right 8.787426e-01	k: 965945	n:1100000
KS ci ratio: 1.279379e-01	ci left: 7.981641e-04	ci right 9.081279e-04	k: 937	n:1100000
SLC39A5   1100000 perm   672 sec   (1637 perm/sec)   p_kst 8.518182e-04   p_cons 8.781318e-01   p_joint 5.186364e-03

Joint ci ratio: 5.250592e-02	ci left: 4.865182e-03	ci right 5.128402e-03	k: 5545	n:1110000
Cons ci ratio: 1.386148e-03	ci left: 8.775125e-01	ci right 8.787306e-01	k: 974716	n:1110000
KS ci ratio: 1.273285e-01	ci left: 7.988226e-04	ci right 9.083134e-04	k: 946	n:1110000
SLC39A5   1110000 perm   682 sec   (1627 perm/sec)   p_kst 8.522523e-04   p_cons 8.781225e-01   p_joint 4.995495e-03

Joint ci ratio: 5.232253e-02	ci left: 4.856107e-03	ci right 5.117891e-03	k: 5584	n:1120000
Cons ci ratio: 1.379861e-03	ci left: 8.775284e-01	ci right 8.787410e-01	k: 983512	n:1120000
KS ci ratio: 1.265952e-01	ci left: 8.011999e-04	ci right 9.103366e-04	k: 957	n:1120000
SLC39A5   1120000 perm   692 sec   (1618 perm/sec)   p_kst 8.544643e-04   p_cons 8.781357e-01   p_joint 4.985714e-03

Joint ci ratio: 5.229077e-02	ci left: 4.819244e-03	ci right 5.078879e-03	k: 5591	n:1130000
Cons ci ratio: 1.373721e-03	ci left: 8.775344e-01	ci right 8.787416e-01	k: 992297	n:1130000
KS ci ratio: 1.262663e-01	ci left: 7.983944e-04	ci right 9.068453e-04	k: 962	n:1130000
SLC39A5   1130000 perm   703 sec   (1608 perm/sec)   p_kst 8.513274e-04   p_cons 8.781389e-01   p_joint 4.947788e-03

Joint ci ratio: 4.926248e-02	ci left: 5.387584e-03	ci right 5.660552e-03	k: 6296	n:1140000
Cons ci ratio: 1.367685e-03	ci left: 8.775367e-01	ci right 8.787386e-01	k: 1001078	n:1140000
KS ci ratio: 1.255512e-01	ci left: 8.007362e-04	ci right 9.088433e-04	k: 973	n:1140000
SLC39A5   1140000 perm   713 sec   (1599 perm/sec)   p_kst 8.535088e-04   p_cons 8.781386e-01   p_joint 5.522807e-03

Joint ci ratio: 4.907594e-02	ci left: 5.381961e-03	ci right 5.653582e-03	k: 6344	n:1150000
Cons ci ratio: 1.361821e-03	ci left: 8.775242e-01	ci right 8.787209e-01	k: 1009842	n:1150000
KS ci ratio: 1.249751e-01	ci left: 8.013541e-04	ci right 9.090115e-04	k: 982	n:1150000
SLC39A5   1150000 perm   724 sec   (1589 perm/sec)   p_kst 8.539130e-04   p_cons 8.781235e-01   p_joint 5.516522e-03

Joint ci ratio: 4.884927e-02	ci left: 5.385804e-03	ci right 5.656329e-03	k: 6403	n:1160000
Cons ci ratio: 1.355771e-03	ci left: 8.775534e-01	ci right 8.787448e-01	k: 1018654	n:1160000
KS ci ratio: 1.242815e-01	ci left: 8.036331e-04	ci right 9.109533e-04	k: 993	n:1160000
SLC39A5   1160000 perm   734 sec   (1580 perm/sec)   p_kst 8.560345e-04   p_cons 8.781500e-01   p_joint 5.519828e-03

Joint ci ratio: 4.907050e-02	ci left: 5.291644e-03	ci right 5.558677e-03	k: 6346	n:1170000
Cons ci ratio: 1.349999e-03	ci left: 8.775503e-01	ci right 8.787367e-01	k: 1027429	n:1170000
KS ci ratio: 1.235994e-01	ci left: 8.058747e-04	ci right 9.128604e-04	k: 1004	n:1170000
SLC39A5   1170000 perm   744 sec   (1572 perm/sec)   p_kst 8.581197e-04   p_cons 8.781444e-01   p_joint 5.423932e-03

Joint ci ratio: 4.944505e-02	ci left: 5.167275e-03	ci right 5.430078e-03	k: 6251	n:1180000
Cons ci ratio: 1.344184e-03	ci left: 8.775661e-01	ci right 8.787473e-01	k: 1036226	n:1180000
KS ci ratio: 1.231712e-01	ci left: 8.047943e-04	ci right 9.112395e-04	k: 1011	n:1180000
SLC39A5   1180000 perm   755 sec   (1562 perm/sec)   p_kst 8.567797e-04   p_cons 8.781576e-01   p_joint 5.297458e-03

Joint ci ratio: 4.924072e-02	ci left: 5.167010e-03	ci right 5.428684e-03	k: 6303	n:1190000
Cons ci ratio: 1.338301e-03	ci left: 8.776043e-01	ci right 8.787804e-01	k: 1045050	n:1190000
KS ci ratio: 1.225071e-01	ci left: 8.069911e-04	ci right 9.131096e-04	k: 1022	n:1190000
SLC39A5   1190000 perm   766 sec   (1553 perm/sec)   p_kst 8.588235e-04   p_cons 8.781933e-01   p_joint 5.296639e-03

Joint ci ratio: 4.906219e-02	ci left: 5.161814e-03	ci right 5.422249e-03	k: 6349	n:1200000
Cons ci ratio: 1.332464e-03	ci left: 8.776469e-01	ci right 8.788179e-01	k: 1053880	n:1200000
KS ci ratio: 1.222090e-01	ci left: 8.043052e-04	ci right 9.097946e-04	k: 1027	n:1200000
SLC39A5   1200000 perm   777 sec   (1545 perm/sec)   p_kst 8.558333e-04   p_cons 8.782333e-01   p_joint 5.290833e-03

Joint ci ratio: 4.930188e-02	ci left: 5.069355e-03	ci right 5.326411e-03	k: 6288	n:1210000
Cons ci ratio: 1.326825e-03	ci left: 8.776689e-01	ci right 8.788350e-01	k: 1062686	n:1210000
KS ci ratio: 1.212686e-01	ci left: 8.104787e-04	ci right 9.159010e-04	k: 1043	n:1210000
SLC39A5   1210000 perm   788 sec   (1536 perm/sec)   p_kst 8.619835e-04   p_cons 8.782529e-01   p_joint 5.196694e-03

Joint ci ratio: 5.016408e-02	ci left: 4.855370e-03	ci right 5.106005e-03	k: 6075	n:1220000
Cons ci ratio: 1.321505e-03	ci left: 8.776504e-01	ci right 8.788118e-01	k: 1071443	n:1220000
KS ci ratio: 1.205774e-01	ci left: 8.133741e-04	ci right 9.185270e-04	k: 1055	n:1220000
SLC39A5   1220000 perm   800 sec   (1525 perm/sec)   p_kst 8.647541e-04   p_cons 8.782320e-01   p_joint 4.979508e-03

Joint ci ratio: 4.998354e-02	ci left: 4.851220e-03	ci right 5.100713e-03	k: 6119	n:1230000
Cons ci ratio: 1.316074e-03	ci left: 8.776606e-01	ci right 8.788173e-01	k: 1080235	n:1230000
KS ci ratio: 1.202364e-01	ci left: 8.114923e-04	ci right 9.160843e-04	k: 1061	n:1230000
SLC39A5   1230000 perm   811 sec   (1516 perm/sec)   p_kst 8.626016e-04   p_cons 8.782398e-01   p_joint 4.974797e-03

Joint ci ratio: 4.984153e-02	ci left: 4.839970e-03	ci right 5.088157e-03	k: 6154	n:1240000
Cons ci ratio: 1.310966e-03	ci left: 8.776287e-01	ci right 8.787808e-01	k: 1088975	n:1240000
KS ci ratio: 1.196742e-01	ci left: 8.127706e-04	ci right 9.170028e-04	k: 1071	n:1240000
SLC39A5   1240000 perm   823 sec   (1507 perm/sec)   p_kst 8.637097e-04   p_cons 8.782056e-01   p_joint 4.962903e-03

Joint ci ratio: 4.962824e-02	ci left: 4.843123e-03	ci right 5.090379e-03	k: 6207	n:1250000
Cons ci ratio: 1.305844e-03	ci left: 8.776093e-01	ci right 8.787569e-01	k: 1097730	n:1250000
KS ci ratio: 1.192855e-01	ci left: 8.117011e-04	ci right 9.154341e-04	k: 1078	n:1250000
SLC39A5   1250000 perm   835 sec   (1498 perm/sec)   p_kst 8.624000e-04   p_cons 8.781840e-01   p_joint 4.965600e-03

Joint ci ratio: 5.056259e-02	ci left: 4.627554e-03	ci right 4.868382e-03	k: 5981	n:1260000
Cons ci ratio: 1.300844e-03	ci left: 8.775800e-01	ci right 8.787231e-01	k: 1106472	n:1260000
KS ci ratio: 1.190652e-01	ci left: 8.083389e-04	ci right 9.114381e-04	k: 1082	n:1260000
SLC39A5   1260000 perm   846 sec   (1489 perm/sec)   p_kst 8.587302e-04   p_cons 8.781524e-01   p_joint 4.746825e-03

Joint ci ratio: 5.076000e-02	ci left: 4.555351e-03	ci right 4.793373e-03	k: 5935	n:1270000
Cons ci ratio: 1.295548e-03	ci left: 8.776094e-01	ci right 8.787479e-01	k: 1115288	n:1270000
KS ci ratio: 1.185735e-01	ci left: 8.088500e-04	ci right 9.115585e-04	k: 1091	n:1270000
SLC39A5   1270000 perm   857 sec   (1481 perm/sec)   p_kst 8.590551e-04   p_cons 8.781795e-01   p_joint 4.673228e-03

Joint ci ratio: 5.070090e-02	ci left: 4.530560e-03	ci right 4.767003e-03	k: 5949	n:1280000
Cons ci ratio: 1.290349e-03	ci left: 8.776330e-01	ci right 8.787669e-01	k: 1124097	n:1280000
KS ci ratio: 1.179272e-01	ci left: 8.116286e-04	ci right 9.140891e-04	k: 1103	n:1280000
SLC39A5   1280000 perm   869 sec   (1473 perm/sec)   p_kst 8.617187e-04   p_cons 8.782008e-01   p_joint 4.647656e-03

Joint ci ratio: 5.075755e-02	ci left: 4.485487e-03	ci right 4.719847e-03	k: 5936	n:1290000
Cons ci ratio: 1.285314e-03	ci left: 8.776390e-01	ci right 8.787686e-01	k: 1132884	n:1290000
KS ci ratio: 1.175552e-01	ci left: 8.106035e-04	ci right 9.125892e-04	k: 1110	n:1290000
SLC39A5   1290000 perm   881 sec   (1465 perm/sec)   p_kst 8.604651e-04   p_cons 8.782047e-01   p_joint 4.601550e-03

Joint ci ratio: 5.054932e-02	ci left: 4.488198e-03	ci right 4.721710e-03	k: 5985	n:1300000
Cons ci ratio: 1.280329e-03	ci left: 8.776466e-01	ci right 8.787717e-01	k: 1141673	n:1300000
KS ci ratio: 1.169774e-01	ci left: 8.125814e-04	ci right 9.142789e-04	k: 1121	n:1300000
SLC39A5   1300000 perm   892 sec   (1457 perm/sec)   p_kst 8.623077e-04   p_cons 8.782100e-01   p_joint 4.603846e-03

Joint ci ratio: 5.036880e-02	ci left: 4.486347e-03	ci right 4.718905e-03	k: 6028	n:1310000
Cons ci ratio: 1.275452e-03	ci left: 8.776456e-01	ci right 8.787665e-01	k: 1150451	n:1310000
KS ci ratio: 1.165626e-01	ci left: 8.123070e-04	ci right 9.135848e-04	k: 1129	n:1310000
SLC39A5   1310000 perm   904 sec   (1450 perm/sec)   p_kst 8.618321e-04   p_cons 8.782069e-01   p_joint 4.601527e-03

Joint ci ratio: 5.024425e-02	ci left: 4.474800e-03	ci right 4.706169e-03	k: 6058	n:1320000
Cons ci ratio: 1.270697e-03	ci left: 8.776333e-01	ci right 8.787499e-01	k: 1159214	n:1320000
KS ci ratio: 1.164084e-01	ci left: 8.083596e-04	ci right 9.090027e-04	k: 1132	n:1320000
SLC39A5   1320000 perm   915 sec   (1442 perm/sec)   p_kst 8.575758e-04   p_cons 8.781924e-01   p_joint 4.589394e-03

Joint ci ratio: 5.101198e-02	ci left: 4.307521e-03	ci right 4.533744e-03	k: 5878	n:1330000
Cons ci ratio: 1.265897e-03	ci left: 8.776377e-01	ci right 8.787501e-01	k: 1167999	n:1330000
KS ci ratio: 1.159488e-01	ci left: 8.088520e-04	ci right 9.091316e-04	k: 1141	n:1330000
SLC39A5   1330000 perm   928 sec   (1434 perm/sec)   p_kst 8.578947e-04   p_cons 8.781947e-01   p_joint 4.419549e-03

Joint ci ratio: 5.144082e-02	ci left: 4.203908e-03	ci right 4.426601e-03	k: 5781	n:1340000
Cons ci ratio: 1.261288e-03	ci left: 8.776189e-01	ci right 8.787272e-01	k: 1176753	n:1340000
KS ci ratio: 1.156960e-01	ci left: 8.064390e-04	ci right 9.061865e-04	k: 1146	n:1340000
SLC39A5   1340000 perm   940 sec   (1426 perm/sec)   p_kst 8.552239e-04   p_cons 8.781739e-01   p_joint 4.314179e-03

Joint ci ratio: 4.735763e-02	ci left: 4.930023e-03	ci right 5.169886e-03	k: 6816	n:1350000
Cons ci ratio: 1.256789e-03	ci left: 8.775900e-01	ci right 8.786943e-01	k: 1185493	n:1350000
KS ci ratio: 1.151451e-01	ci left: 8.083783e-04	ci right 9.078572e-04	k: 1157	n:1350000
SLC39A5   1350000 perm   951 sec   (1419 perm/sec)   p_kst 8.570370e-04   p_cons 8.781430e-01   p_joint 5.048889e-03

Joint ci ratio: 4.738297e-02	ci left: 4.888684e-03	ci right 5.126667e-03	k: 6809	n:1360000
Cons ci ratio: 1.251960e-03	ci left: 8.776263e-01	ci right 8.787265e-01	k: 1194321	n:1360000
KS ci ratio: 1.147494e-01	ci left: 8.081476e-04	ci right 9.072332e-04	k: 1165	n:1360000
SLC39A5   1360000 perm   964 sec   (1411 perm/sec)   p_kst 8.566176e-04   p_cons 8.781772e-01   p_joint 5.006618e-03

Joint ci ratio: 4.726888e-02	ci left: 4.876802e-03	ci right 5.113619e-03	k: 6842	n:1370000
Cons ci ratio: 1.247467e-03	ci left: 8.776139e-01	ci right 8.787101e-01	k: 1203083	n:1370000
KS ci ratio: 1.142604e-01	ci left: 8.093389e-04	ci right 9.081193e-04	k: 1175	n:1370000
SLC39A5   1370000 perm   976 sec   (1404 perm/sec)   p_kst 8.576642e-04   p_cons 8.781628e-01   p_joint 4.994161e-03

Joint ci ratio: 4.852571e-02	ci left: 4.592292e-03	ci right 4.821388e-03	k: 6494	n:1380000
Cons ci ratio: 1.242777e-03	ci left: 8.776437e-01	ci right 8.787358e-01	k: 1211903	n:1380000
KS ci ratio: 1.139701e-01	ci left: 8.076978e-04	ci right 9.060106e-04	k: 1181	n:1380000
SLC39A5   1380000 perm   988 sec   (1397 perm/sec)   p_kst 8.557971e-04   p_cons 8.781906e-01   p_joint 4.705797e-03

Joint ci ratio: 4.838082e-02	ci left: 4.586972e-03	ci right 4.815100e-03	k: 6533	n:1390000
Cons ci ratio: 1.238294e-03	ci left: 8.776465e-01	ci right 8.787347e-01	k: 1220686	n:1390000
KS ci ratio: 1.136342e-01	ci left: 8.067797e-04	ci right 9.046719e-04	k: 1188	n:1390000
SLC39A5   1390000 perm   1001 sec   (1388 perm/sec)   p_kst 8.546763e-04   p_cons 8.781914e-01   p_joint 4.700000e-03

Joint ci ratio: 4.820774e-02	ci left: 4.587374e-03	ci right 4.814683e-03	k: 6580	n:1400000
Cons ci ratio: 1.233843e-03	ci left: 8.776521e-01	ci right 8.787363e-01	k: 1229473	n:1400000
KS ci ratio: 1.132539e-01	ci left: 8.065691e-04	ci right 9.040863e-04	k: 1196	n:1400000
SLC39A5   1400000 perm   1013 sec   (1382 perm/sec)   p_kst 8.542857e-04   p_cons 8.781950e-01   p_joint 4.700000e-03

Joint ci ratio: 4.864870e-02	ci left: 4.472158e-03	ci right 4.695842e-03	k: 6462	n:1410000
Cons ci ratio: 1.229471e-03	ci left: 8.776519e-01	ci right 8.787323e-01	k: 1238252	n:1410000
KS ci ratio: 1.128773e-01	ci left: 8.063620e-04	ci right 9.035085e-04	k: 1204	n:1410000
SLC39A5   1410000 perm   1026 sec   (1375 perm/sec)   p_kst 8.539007e-04   p_cons 8.781929e-01   p_joint 4.582979e-03

Joint ci ratio: 4.884346e-02	ci left: 4.405183e-03	ci right 4.626423e-03	k: 6411	n:1420000
Cons ci ratio: 1.225098e-03	ci left: 8.776602e-01	ci right 8.787368e-01	k: 1247043	n:1420000
KS ci ratio: 1.126906e-01	ci left: 8.034208e-04	ci right 9.000422e-04	k: 1208	n:1420000
SLC39A5   1420000 perm   1038 sec   (1368 perm/sec)   p_kst 8.507042e-04   p_cons 8.781993e-01   p_joint 4.514789e-03

Joint ci ratio: 4.986211e-02	ci left: 4.196172e-03	ci right 4.411437e-03	k: 6153	n:1430000
Cons ci ratio: 1.220819e-03	ci left: 8.776600e-01	ci right 8.787328e-01	k: 1255822	n:1430000
KS ci ratio: 1.121814e-01	ci left: 8.052785e-04	ci right 9.016567e-04	k: 1219	n:1430000
SLC39A5   1430000 perm   1050 sec   (1361 perm/sec)   p_kst 8.524476e-04   p_cons 8.781972e-01   p_joint 4.302797e-03

Joint ci ratio: 4.970090e-02	ci left: 4.194464e-03	ci right 4.408926e-03	k: 6193	n:1440000
Cons ci ratio: 1.216458e-03	ci left: 8.776821e-01	ci right 8.787511e-01	k: 1264633	n:1440000
KS ci ratio: 1.118154e-01	ci left: 8.050862e-04	ci right 9.011063e-04	k: 1227	n:1440000
SLC39A5   1440000 perm   1063 sec   (1354 perm/sec)   p_kst 8.520833e-04   p_cons 8.782174e-01   p_joint 4.300694e-03

Joint ci ratio: 4.952130e-02	ci left: 4.196186e-03	ci right 4.409939e-03	k: 6238	n:1450000
Cons ci ratio: 1.212347e-03	ci left: 8.776679e-01	ci right 8.787333e-01	k: 1273392	n:1450000
KS ci ratio: 1.115433e-01	ci left: 8.035562e-04	ci right 8.991453e-04	k: 1233	n:1450000
SLC39A5   1450000 perm   1076 sec   (1348 perm/sec)   p_kst 8.503448e-04   p_cons 8.782014e-01   p_joint 4.302069e-03

Joint ci ratio: 4.973060e-02	ci left: 4.132268e-03	ci right 4.343679e-03	k: 6186	n:1460000
Cons ci ratio: 1.208157e-03	ci left: 8.776753e-01	ci right 8.787369e-01	k: 1282182	n:1460000
KS ci ratio: 1.114082e-01	ci left: 8.000498e-04	ci right 8.950989e-04	k: 1236	n:1460000
SLC39A5   1460000 perm   1089 sec   (1341 perm/sec)   p_kst 8.465753e-04   p_cons 8.782068e-01   p_joint 4.236986e-03

Joint ci ratio: 4.956267e-02	ci left: 4.132374e-03	ci right 4.343056e-03	k: 6228	n:1470000
Cons ci ratio: 1.204243e-03	ci left: 8.776409e-01	ci right 8.786991e-01	k: 1290911	n:1470000
KS ci ratio: 1.110943e-01	ci left: 7.992367e-04	ci right 8.939042e-04	k: 1243	n:1470000
SLC39A5   1470000 perm   1102 sec   (1334 perm/sec)   p_kst 8.455782e-04   p_cons 8.781707e-01   p_joint 4.236735e-03

Joint ci ratio: 4.674872e-02	ci left: 4.617822e-03	ci right 4.839528e-03	k: 6997	n:1480000
Cons ci ratio: 1.200129e-03	ci left: 8.776497e-01	ci right 8.787043e-01	k: 1299703	n:1480000
KS ci ratio: 1.106946e-01	ci left: 7.997489e-04	ci right 8.941139e-04	k: 1252	n:1480000
SLC39A5   1480000 perm   1115 sec   (1328 perm/sec)   p_kst 8.459459e-04   p_cons 8.781777e-01   p_joint 4.727703e-03

Joint ci ratio: 4.528693e-02	ci left: 4.890028e-03	ci right 5.117271e-03	k: 7454	n:1490000
Cons ci ratio: 1.195828e-03	ci left: 8.776993e-01	ci right 8.787502e-01	k: 1308556	n:1490000
KS ci ratio: 1.101246e-01	ci left: 8.028654e-04	ci right 8.970788e-04	k: 1265	n:1490000
SLC39A5   1490000 perm   1128 sec   (1321 perm/sec)   p_kst 8.489933e-04   p_cons 8.782255e-01   p_joint 5.002685e-03

Joint ci ratio: 4.511468e-02	ci left: 4.894999e-03	ci right 5.121585e-03	k: 7511	n:1500000
Cons ci ratio: 1.191598e-03	ci left: 8.777437e-01	ci right 8.787909e-01	k: 1317402	n:1500000
KS ci ratio: 1.096922e-01	ci left: 8.039964e-04	ci right 8.979481e-04	k: 1275	n:1500000
SLC39A5   1500000 perm   1141 sec   (1315 perm/sec)   p_kst 8.500000e-04   p_cons 8.782680e-01   p_joint 5.007333e-03

Joint ci ratio: 4.510337e-02	ci left: 4.865199e-03	ci right 5.090348e-03	k: 7515	n:1510000
Cons ci ratio: 1.187630e-03	ci left: 8.777483e-01	ci right 8.787920e-01	k: 1326189	n:1510000
KS ci ratio: 1.093074e-01	ci left: 8.044689e-04	ci right 8.981248e-04	k: 1284	n:1510000
SLC39A5   1510000 perm   1154 sec   (1308 perm/sec)   p_kst 8.503311e-04   p_cons 8.782709e-01   p_joint 4.976821e-03

Joint ci ratio: 4.493618e-02	ci left: 4.869619e-03	ci right 5.094116e-03	k: 7571	n:1520000
Cons ci ratio: 1.183701e-03	ci left: 8.777528e-01	ci right 8.787931e-01	k: 1334976	n:1520000
KS ci ratio: 1.089266e-01	ci left: 8.049358e-04	ci right 8.982987e-04	k: 1293	n:1520000
SLC39A5   1520000 perm   1168 sec   (1302 perm/sec)   p_kst 8.506579e-04   p_cons 8.782737e-01   p_joint 4.980921e-03

Joint ci ratio: 4.481219e-02	ci left: 4.864934e-03	ci right 5.088580e-03	k: 7613	n:1530000
Cons ci ratio: 1.179977e-03	ci left: 8.777272e-01	ci right 8.787642e-01	k: 1343717	n:1530000
KS ci ratio: 1.085081e-01	ci left: 8.060331e-04	ci right 8.991410e-04	k: 1303	n:1530000
SLC39A5   1530000 perm   1181 sec   (1296 perm/sec)   p_kst 8.516340e-04   p_cons 8.782464e-01   p_joint 4.975817e-03

Joint ci ratio: 4.465406e-02	ci left: 4.868016e-03	ci right 5.090994e-03	k: 7667	n:1540000
Cons ci ratio: 1.176095e-03	ci left: 8.777371e-01	ci right 8.787706e-01	k: 1352512	n:1540000
KS ci ratio: 1.076850e-01	ci left: 8.134352e-04	ci right 9.066403e-04	k: 1323	n:1540000
SLC39A5   1540000 perm   1194 sec   (1290 perm/sec)   p_kst 8.590909e-04   p_cons 8.782545e-01   p_joint 4.978571e-03

Joint ci ratio: 4.453238e-02	ci left: 4.863404e-03	ci right 5.085548e-03	k: 7709	n:1550000
Cons ci ratio: 1.172152e-03	ci left: 8.777649e-01	ci right 8.787950e-01	k: 1361335	n:1550000
KS ci ratio: 1.073611e-01	ci left: 8.132097e-04	ci right 9.060910e-04	k: 1331	n:1550000
SLC39A5   1550000 perm   1207 sec   (1284 perm/sec)   p_kst 8.587097e-04   p_cons 8.782806e-01   p_joint 4.973548e-03

Joint ci ratio: 4.439443e-02	ci left: 4.862656e-03	ci right 5.084060e-03	k: 7757	n:1560000
Cons ci ratio: 1.168395e-03	ci left: 8.777654e-01	ci right 8.787922e-01	k: 1370116	n:1560000
KS ci ratio: 1.071202e-01	ci left: 8.117397e-04	ci right 9.042321e-04	k: 1337	n:1560000
SLC39A5   1560000 perm   1221 sec   (1278 perm/sec)   p_kst 8.570513e-04   p_cons 8.782795e-01   p_joint 4.972436e-03

Joint ci ratio: 4.455994e-02	ci left: 4.795778e-03	ci right 5.014972e-03	k: 7700	n:1570000
Cons ci ratio: 1.164605e-03	ci left: 8.777786e-01	ci right 8.788021e-01	k: 1378917	n:1570000
KS ci ratio: 1.068015e-01	ci left: 8.115286e-04	ci right 9.037044e-04	k: 1345	n:1570000
SLC39A5   1570000 perm   1234 sec   (1272 perm/sec)   p_kst 8.566879e-04   p_cons 8.782911e-01   p_joint 4.904459e-03

Joint ci ratio: 4.438433e-02	ci left: 4.803604e-03	ci right 5.022268e-03	k: 7761	n:1580000
Cons ci ratio: 1.160821e-03	ci left: 8.777974e-01	ci right 8.788176e-01	k: 1387727	n:1580000
KS ci ratio: 1.063284e-01	ci left: 8.137850e-04	ci right 9.057820e-04	k: 1357	n:1580000
SLC39A5   1580000 perm   1248 sec   (1266 perm/sec)   p_kst 8.588608e-04   p_cons 8.783082e-01   p_joint 4.912025e-03

Joint ci ratio: 4.425629e-02	ci left: 4.801380e-03	ci right 5.019297e-03	k: 7806	n:1590000
Cons ci ratio: 1.157226e-03	ci left: 8.777877e-01	ci right 8.788047e-01	k: 1396492	n:1590000
KS ci ratio: 1.060944e-01	ci left: 8.123401e-04	ci right 9.039591e-04	k: 1363	n:1590000
SLC39A5   1590000 perm   1262 sec   (1260 perm/sec)   p_kst 8.572327e-04   p_cons 8.782969e-01   p_joint 4.909434e-03

Joint ci ratio: 4.421147e-02	ci left: 4.781260e-03	ci right 4.998038e-03	k: 7822	n:1600000
Cons ci ratio: 1.153409e-03	ci left: 8.778256e-01	ci right 8.788393e-01	k: 1405333	n:1600000
KS ci ratio: 1.058619e-01	ci left: 8.109136e-04	ci right 9.021587e-04	k: 1369	n:1600000
SLC39A5   1600000 perm   1276 sec   (1254 perm/sec)   p_kst 8.556250e-04   p_cons 8.783331e-01   p_joint 4.888750e-03

Joint ci ratio: 4.407647e-02	ci left: 4.781047e-03	ci right 4.997137e-03	k: 7870	n:1610000
Cons ci ratio: 1.149685e-03	ci left: 8.778525e-01	ci right 8.788629e-01	k: 1414157	n:1610000
KS ci ratio: 1.053630e-01	ci left: 8.137381e-04	ci right 9.048429e-04	k: 1382	n:1610000
SLC39A5   1610000 perm   1290 sec   (1248 perm/sec)   p_kst 8.583851e-04   p_cons 8.783584e-01   p_joint 4.888199e-03

Joint ci ratio: 4.486284e-02	ci left: 4.585490e-03	ci right 4.796534e-03	k: 7598	n:1620000
Cons ci ratio: 1.146232e-03	ci left: 8.778351e-01	ci right 8.788425e-01	k: 1422910	n:1620000
KS ci ratio: 1.049464e-01	ci left: 8.153266e-04	ci right 9.062261e-04	k: 1393	n:1620000
SLC39A5   1620000 perm   1304 sec   (1242 perm/sec)   p_kst 8.598765e-04   p_cons 8.783395e-01   p_joint 4.690123e-03

Joint ci ratio: 4.474826e-02	ci left: 4.581016e-03	ci right 4.791302e-03	k: 7637	n:1630000
Cons ci ratio: 1.142765e-03	ci left: 8.778266e-01	ci right 8.788309e-01	k: 1431677	n:1630000
KS ci ratio: 1.047214e-01	ci left: 8.139091e-04	ci right 9.044439e-04	k: 1399	n:1630000
SLC39A5   1630000 perm   1318 sec   (1237 perm/sec)   p_kst 8.582822e-04   p_cons 8.783294e-01   p_joint 4.685276e-03

Joint ci ratio: 4.513041e-02	ci left: 4.475906e-03	ci right 4.683167e-03	k: 7509	n:1640000
Cons ci ratio: 1.139150e-03	ci left: 8.778518e-01	ci right 8.788530e-01	k: 1440499	n:1640000
KS ci ratio: 1.045350e-01	ci left: 8.119152e-04	ci right 9.020576e-04	k: 1404	n:1640000
SLC39A5   1640000 perm   1332 sec   (1231 perm/sec)   p_kst 8.560976e-04   p_cons 8.783530e-01   p_joint 4.578659e-03

Joint ci ratio: 4.499582e-02	ci left: 4.475745e-03	ci right 4.682364e-03	k: 7554	n:1650000
Cons ci ratio: 1.135807e-03	ci left: 8.778318e-01	ci right 8.788300e-01	k: 1449247	n:1650000
KS ci ratio: 1.043496e-01	ci left: 8.099456e-04	ci right 8.997001e-04	k: 1409	n:1650000
SLC39A5   1650000 perm   1346 sec   (1226 perm/sec)   p_kst 8.539394e-04   p_cons 8.783315e-01   p_joint 4.578182e-03

Joint ci ratio: 4.169786e-02	ci left: 5.185340e-03	ci right 5.406753e-03	k: 8790	n:1660000
Cons ci ratio: 1.132324e-03	ci left: 8.778439e-01	ci right 8.788391e-01	k: 1458048	n:1660000
KS ci ratio: 1.040181e-01	ci left: 8.103468e-04	ci right 8.998431e-04	k: 1418	n:1660000
SLC39A5   1660000 perm   1361 sec   (1220 perm/sec)   p_kst 8.542169e-04   p_cons 8.783422e-01   p_joint 5.295181e-03

Joint ci ratio: 4.161059e-02	ci left: 5.176215e-03	ci right 5.396764e-03	k: 8827	n:1670000
Cons ci ratio: 1.128854e-03	ci left: 8.778596e-01	ci right 8.788517e-01	k: 1466855	n:1670000
KS ci ratio: 1.036898e-01	ci left: 8.107437e-04	ci right 8.999840e-04	k: 1427	n:1670000
SLC39A5   1670000 perm   1375 sec   (1214 perm/sec)   p_kst 8.544910e-04   p_cons 8.783563e-01   p_joint 5.285629e-03

Joint ci ratio: 4.147685e-02	ci left: 5.178980e-03	ci right 5.398921e-03	k: 8884	n:1680000
Cons ci ratio: 1.125566e-03	ci left: 8.778464e-01	ci right 8.788356e-01	k: 1475614	n:1680000
KS ci ratio: 1.034006e-01	ci left: 8.105564e-04	ci right 8.995121e-04	k: 1435	n:1680000
SLC39A5   1680000 perm   1390 sec   (1209 perm/sec)   p_kst 8.541667e-04   p_cons 8.783417e-01   p_joint 5.288095e-03

Joint ci ratio: 4.136067e-02	ci left: 5.177615e-03	ci right 5.396867e-03	k: 8934	n:1690000
Cons ci ratio: 1.122112e-03	ci left: 8.778708e-01	ci right 8.788569e-01	k: 1484436	n:1690000
KS ci ratio: 1.030424e-01	ci left: 8.115246e-04	ci right 9.002594e-04	k: 1445	n:1690000
SLC39A5   1690000 perm   1405 sec   (1203 perm/sec)   p_kst 8.550296e-04   p_cons 8.783645e-01   p_joint 5.286391e-03

Joint ci ratio: 4.126856e-02	ci left: 5.170444e-03	ci right 5.388894e-03	k: 8974	n:1700000
Cons ci ratio: 1.118774e-03	ci left: 8.778783e-01	ci right 8.788616e-01	k: 1493230	n:1700000
KS ci ratio: 1.029003e-01	ci left: 8.090433e-04	ci right 8.973773e-04	k: 1449	n:1700000
SLC39A5   1700000 perm   1419 sec   (1198 perm/sec)   p_kst 8.523529e-04   p_cons 8.783706e-01   p_joint 5.278824e-03

Joint ci ratio: 4.116787e-02	ci left: 5.165673e-03	ci right 5.383376e-03	k: 9018	n:1710000
Cons ci ratio: 1.115488e-03	ci left: 8.778817e-01	ci right 8.788621e-01	k: 1502017	n:1710000
KS ci ratio: 1.027235e-01	ci left: 8.071608e-04	ci right 8.951287e-04	k: 1454	n:1710000
SLC39A5   1710000 perm   1435 sec   (1192 perm/sec)   p_kst 8.502924e-04   p_cons 8.783725e-01   p_joint 5.273684e-03

Joint ci ratio: 4.104744e-02	ci left: 5.166137e-03	ci right 5.383208e-03	k: 9071	n:1720000
Cons ci ratio: 1.112119e-03	ci left: 8.779066e-01	ci right 8.788840e-01	k: 1510841	n:1720000
KS ci ratio: 1.023722e-01	ci left: 8.081328e-04	ci right 8.958874e-04	k: 1464	n:1720000
SLC39A5   1720000 perm   1450 sec   (1186 perm/sec)   p_kst 8.511628e-04   p_cons 8.783959e-01   p_joint 5.273837e-03

Joint ci ratio: 4.107539e-02	ci left: 5.129408e-03	ci right 5.345086e-03	k: 9059	n:1730000
Cons ci ratio: 1.108999e-03	ci left: 8.778889e-01	ci right 8.788636e-01	k: 1519592	n:1730000
KS ci ratio: 1.021981e-01	ci left: 8.062777e-04	ci right 8.936730e-04	k: 1469	n:1730000
SLC39A5   1730000 perm   1465 sec   (1181 perm/sec)   p_kst 8.491329e-04   p_cons 8.783769e-01   p_joint 5.236416e-03

Joint ci ratio: 4.093770e-02	ci left: 5.134627e-03	ci right 5.349783e-03	k: 9120	n:1740000
Cons ci ratio: 1.105849e-03	ci left: 8.778824e-01	ci right 8.788543e-01	k: 1528362	n:1740000
KS ci ratio: 1.018178e-01	ci left: 8.078046e-04	ci right 8.950200e-04	k: 1480	n:1740000
SLC39A5   1740000 perm   1480 sec   (1176 perm/sec)   p_kst 8.505747e-04   p_cons 8.783690e-01   p_joint 5.241379e-03

Joint ci ratio: 4.177527e-02	ci left: 4.901687e-03	ci right 5.111385e-03	k: 8760	n:1750000
Cons ci ratio: 1.102710e-03	ci left: 8.778788e-01	ci right 8.788479e-01	k: 1537137	n:1750000
KS ci ratio: 1.015098e-01	ci left: 8.082006e-04	ci right 8.951792e-04	k: 1489	n:1750000
SLC39A5   1750000 perm   1495 sec   (1171 perm/sec)   p_kst 8.508571e-04   p_cons 8.783640e-01   p_joint 5.005714e-03

Joint ci ratio: 4.241305e-02	ci left: 4.727655e-03	ci right 4.933071e-03	k: 8500	n:1760000
Cons ci ratio: 1.099472e-03	ci left: 8.778997e-01	ci right 8.788661e-01	k: 1545955	n:1760000
KS ci ratio: 1.011034e-01	ci left: 8.102541e-04	ci right 8.970837e-04	k: 1501	n:1760000
SLC39A5   1760000 perm   1511 sec   (1165 perm/sec)   p_kst 8.528409e-04   p_cons 8.783835e-01   p_joint 4.829545e-03

Joint ci ratio: 4.231372e-02	ci left: 4.723304e-03	ci right 4.928039e-03	k: 8540	n:1770000
Cons ci ratio: 1.096269e-03	ci left: 8.779193e-01	ci right 8.788828e-01	k: 1554771	n:1770000
KS ci ratio: 1.008018e-01	ci left: 8.106327e-04	ci right 8.972285e-04	k: 1510	n:1770000
SLC39A5   1770000 perm   1525 sec   (1160 perm/sec)   p_kst 8.531073e-04   p_cons 8.784017e-01   p_joint 4.824859e-03

Joint ci ratio: 4.891182e-02	ci left: 3.507548e-03	ci right 3.683960e-03	k: 6399	n:1780000
Cons ci ratio: 1.093102e-03	ci left: 8.779370e-01	ci right 8.788977e-01	k: 1563584	n:1780000
KS ci ratio: 1.048752e-01	ci left: 7.431315e-04	ci right 8.259223e-04	k: 1395	n:1780000
SLC39A5   1780000 perm   1541 sec   (1155 perm/sec)   p_kst 7.837079e-04   p_cons 8.784180e-01   p_joint 3.594944e-03

Joint ci ratio: 4.900075e-02	ci left: 3.475260e-03	ci right 3.650375e-03	k: 6376	n:1790000
Cons ci ratio: 1.090008e-03	ci left: 8.779455e-01	ci right 8.789035e-01	k: 1572381	n:1790000
KS ci ratio: 1.045387e-01	ci left: 7.438762e-04	ci right 8.264678e-04	k: 1404	n:1790000
SLC39A5   1790000 perm   1555 sec   (1151 perm/sec)   p_kst 7.843575e-04   p_cons 8.784251e-01   p_joint 3.562011e-03

Joint ci ratio: 4.886684e-02	ci left: 3.475159e-03	ci right 3.649777e-03	k: 6411	n:1800000
Cons ci ratio: 1.087010e-03	ci left: 8.779400e-01	ci right 8.788954e-01	k: 1581153	n:1800000
KS ci ratio: 1.043533e-01	ci left: 7.424488e-04	ci right 8.247266e-04	k: 1409	n:1800000
SLC39A5   1800000 perm   1572 sec   (1145 perm/sec)   p_kst 7.827778e-04   p_cons 8.784183e-01   p_joint 3.561667e-03

Joint ci ratio: 4.877200e-02	ci left: 3.469603e-03	ci right 3.643594e-03	k: 6436	n:1810000
Cons ci ratio: 1.083872e-03	ci left: 8.779673e-01	ci right 8.789199e-01	k: 1589984	n:1810000
KS ci ratio: 1.040953e-01	ci left: 7.421134e-04	ci right 8.241383e-04	k: 1416	n:1810000
SLC39A5   1810000 perm   1588 sec   (1140 perm/sec)   p_kst 7.823204e-04   p_cons 8.784442e-01   p_joint 3.555801e-03

Joint ci ratio: 4.874968e-02	ci left: 3.453795e-03	ci right 3.626911e-03	k: 6442	n:1820000
Cons ci ratio: 1.080889e-03	ci left: 8.779689e-01	ci right 8.789189e-01	k: 1598769	n:1820000
KS ci ratio: 1.038026e-01	ci left: 7.423172e-04	ci right 8.241199e-04	k: 1424	n:1820000
SLC39A5   1820000 perm   1604 sec   (1135 perm/sec)   p_kst 7.824176e-04   p_cons 8.784445e-01   p_joint 3.539560e-03

Joint ci ratio: 4.920829e-02	ci left: 3.370687e-03	ci right 3.541272e-03	k: 6323	n:1830000
Cons ci ratio: 1.077878e-03	ci left: 8.779809e-01	ci right 8.789283e-01	k: 1607573	n:1830000
KS ci ratio: 1.035125e-01	ci left: 7.425191e-04	ci right 8.241014e-04	k: 1432	n:1830000
SLC39A5   1830000 perm   1620 sec   (1130 perm/sec)   p_kst 7.825137e-04   p_cons 8.784552e-01   p_joint 3.455191e-03

Joint ci ratio: 4.899928e-02	ci left: 3.381356e-03	ci right 3.551734e-03	k: 6377	n:1840000
Cons ci ratio: 1.074962e-03	ci left: 8.779786e-01	ci right 8.789234e-01	k: 1616351	n:1840000
KS ci ratio: 1.029392e-01	ci left: 7.469549e-04	ci right 8.285426e-04	k: 1448	n:1840000
SLC39A5   1840000 perm   1636 sec   (1125 perm/sec)   p_kst 7.869565e-04   p_cons 8.784516e-01   p_joint 3.465761e-03

Joint ci ratio: 4.911967e-02	ci left: 3.346526e-03	ci right 3.515575e-03	k: 6346	n:1850000
Cons ci ratio: 1.072152e-03	ci left: 8.779601e-01	ci right 8.789025e-01	k: 1625099	n:1850000
KS ci ratio: 1.026562e-01	ci left: 7.471305e-04	ci right 8.284994e-04	k: 1456	n:1850000
SLC39A5   1850000 perm   1652 sec   (1120 perm/sec)   p_kst 7.870270e-04   p_cons 8.784319e-01   p_joint 3.430270e-03

Joint ci ratio: 4.914733e-02	ci left: 3.324816e-03	ci right 3.492865e-03	k: 6339	n:1860000
Cons ci ratio: 1.069240e-03	ci left: 8.779666e-01	ci right 8.789064e-01	k: 1633893	n:1860000
KS ci ratio: 1.024806e-01	ci left: 7.457328e-04	ci right 8.268023e-04	k: 1461	n:1860000
SLC39A5   1860000 perm   1668 sec   (1115 perm/sec)   p_kst 7.854839e-04   p_cons 8.784371e-01   p_joint 3.408065e-03

Joint ci ratio: 4.960120e-02	ci left: 3.246295e-03	ci right 3.411934e-03	k: 6224	n:1870000
Cons ci ratio: 1.066541e-03	ci left: 8.779350e-01	ci right 8.788724e-01	k: 1642616	n:1870000
KS ci ratio: 1.022710e-01	ci left: 7.448713e-04	ci right 8.256716e-04	k: 1467	n:1870000
SLC39A5   1870000 perm   1683 sec   (1111 perm/sec)   p_kst 7.844920e-04   p_cons 8.784043e-01   p_joint 3.328342e-03

Joint ci ratio: 4.947025e-02	ci left: 3.246363e-03	ci right 3.411556e-03	k: 6257	n:1880000
Cons ci ratio: 1.063759e-03	ci left: 8.779245e-01	ci right 8.788594e-01	k: 1651378	n:1880000
KS ci ratio: 1.020973e-01	ci left: 7.435008e-04	ci right 8.240072e-04	k: 1472	n:1880000
SLC39A5   1880000 perm   1699 sec   (1106 perm/sec)   p_kst 7.829787e-04   p_cons 8.783926e-01   p_joint 3.328191e-03

Joint ci ratio: 4.932854e-02	ci left: 3.247999e-03	ci right 3.412788e-03	k: 6293	n:1890000
Cons ci ratio: 1.060907e-03	ci left: 8.779327e-01	ci right 8.788651e-01	k: 1660175	n:1890000
KS ci ratio: 1.015812e-01	ci left: 7.473014e-04	ci right 8.277859e-04	k: 1487	n:1890000
SLC39A5   1890000 perm   1716 sec   (1102 perm/sec)   p_kst 7.867725e-04   p_cons 8.783995e-01   p_joint 3.329630e-03

Joint ci ratio: 4.991318e-02	ci left: 3.155012e-03	ci right 3.317035e-03	k: 6147	n:1900000
Cons ci ratio: 1.058085e-03	ci left: 8.779392e-01	ci right 8.788691e-01	k: 1668969	n:1900000
KS ci ratio: 1.011740e-01	ci left: 7.495239e-04	ci right 8.299050e-04	k: 1499	n:1900000
SLC39A5   1900000 perm   1732 sec   (1097 perm/sec)   p_kst 7.889474e-04   p_cons 8.784047e-01   p_joint 3.235263e-03

Joint ci ratio: 4.982830e-02	ci left: 3.149351e-03	ci right 3.310800e-03	k: 6168	n:1910000
Cons ci ratio: 1.055284e-03	ci left: 8.779462e-01	ci right 8.788736e-01	k: 1677764	n:1910000
KS ci ratio: 1.010059e-01	ci left: 7.481513e-04	ci right 8.282439e-04	k: 1504	n:1910000
SLC39A5   1910000 perm   1747 sec   (1093 perm/sec)   p_kst 7.874346e-04   p_cons 8.784105e-01   p_joint 3.229319e-03

Joint ci ratio: 4.967547e-02	ci left: 3.152493e-03	ci right 3.313594e-03	k: 6206	n:1920000
Cons ci ratio: 1.052609e-03	ci left: 8.779317e-01	ci right 8.788568e-01	k: 1686518	n:1920000
KS ci ratio: 1.005723e-01	ci left: 7.508549e-04	ci right 8.308715e-04	k: 1517	n:1920000
SLC39A5   1920000 perm   1763 sec   (1089 perm/sec)   p_kst 7.901042e-04   p_cons 8.783948e-01   p_joint 3.232292e-03

Joint ci ratio: 4.815098e-02	ci left: 3.339863e-03	ci right 3.505156e-03	k: 6604	n:1930000
Cons ci ratio: 1.049794e-03	ci left: 8.779500e-01	ci right 8.788727e-01	k: 1695335	n:1930000
KS ci ratio: 1.002754e-01	ci left: 7.515106e-04	ci right 8.313468e-04	k: 1526	n:1930000
SLC39A5   1930000 perm   1780 sec   (1084 perm/sec)   p_kst 7.906736e-04   p_cons 8.784119e-01   p_joint 3.421762e-03

Joint ci ratio: 4.799127e-02	ci left: 3.345055e-03	ci right 3.510041e-03	k: 6648	n:1940000
Cons ci ratio: 1.047022e-03	ci left: 8.779641e-01	ci right 8.788843e-01	k: 1704144	n:1940000
KS ci ratio: 1.000464e-01	ci left: 7.511547e-04	ci right 8.307601e-04	k: 1533	n:1940000
SLC39A5   1940000 perm   1796 sec   (1080 perm/sec)   p_kst 7.902062e-04   p_cons 8.784247e-01   p_joint 3.426804e-03

Joint ci ratio: 4.789422e-02	ci left: 3.341581e-03	ci right 3.506053e-03	k: 6675	n:1950000
Cons ci ratio: 1.044282e-03	ci left: 8.779759e-01	ci right 8.788937e-01	k: 1712949	n:1950000
KS ci ratio: 9.981894e-02	ci left: 7.508026e-04	ci right 8.301792e-04	k: 1540	n:1950000
SLC39A5   1950000 perm   1813 sec   (1076 perm/sec)   p_kst 7.897436e-04   p_cons 8.784354e-01   p_joint 3.423077e-03

Outputting figure to mutsig2_images.part000000000161/SLC39A5.4_1663_1950000_0.00078974_0.87844_0.0034231.png
                gene_name: SLC39A5
               theta_stop: 0.100 
                    nperm: 1950000 
                     p_ks: 0.00079 
        ci_ks_bounds_left: 0.00075 
       ci_ks_bounds_right: 0.00083 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0033 
    ci_joint_bounds_right: 0.0035 

Current progress: 46 percent done.
SLC41A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
SLC41A2   10000 perm   2 sec   (4788 perm/sec)   p_kst 8.064000e-01   p_cons 4.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC41A2.4_1762_10000_0.8064_0.4333_1.png
                gene_name: SLC41A2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
SLC4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
Cons ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
KS ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
SLC4A1   10000 perm   2 sec   (5163 perm/sec)   p_kst 5.750000e-01   p_cons 8.518000e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A1.4_2812_10000_0.575_0.8518_0.7682.png
                gene_name: SLC4A1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 49 percent done.
SLC4A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
Cons ci ratio: 1.266032e-02	ci left: 8.997006e-01	ci right 9.112619e-01	k: 9056	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
SLC4A11   10000 perm   3 sec   (3788 perm/sec)   p_kst 1.550000e-02   p_cons 9.056000e-01   p_joint 9.520000e-02

Joint ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
Cons ci ratio: 8.866781e-03	ci left: 9.030944e-01	ci right 9.111868e-01	k: 18144	n:20000
KS ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
SLC4A11   20000 perm   5 sec   (4068 perm/sec)   p_kst 1.530000e-02   p_cons 9.072000e-01   p_joint 7.055000e-02

Joint ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
Cons ci ratio: 7.204858e-03	ci left: 9.046731e-01	ci right 9.112476e-01	k: 27240	n:30000
KS ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
SLC4A11   30000 perm   7 sec   (4104 perm/sec)   p_kst 1.566667e-02   p_cons 9.080000e-01   p_joint 7.120000e-02

Joint ci ratio: 7.759539e-02	ci left: 5.764309e-02	ci right 6.232104e-02	k: 2398	n:40000
Cons ci ratio: 6.464641e-03	ci left: 8.989433e-01	ci right 9.047982e-01	k: 36076	n:40000
KS ci ratio: 1.546906e-01	ci left: 1.457665e-02	ci right 1.704437e-02	k: 631	n:40000
SLC4A11   40000 perm   10 sec   (4020 perm/sec)   p_kst 1.577500e-02   p_cons 9.019000e-01   p_joint 5.995000e-02

Joint ci ratio: 7.201713e-02	ci left: 5.392186e-02	ci right 5.796988e-02	k: 2796	n:50000
Cons ci ratio: 5.759166e-03	ci left: 8.999677e-01	ci right 9.051855e-01	k: 45130	n:50000
KS ci ratio: 1.360170e-01	ci left: 1.522757e-02	ci right 1.746909e-02	k: 816	n:50000
SLC4A11   50000 perm   12 sec   (4016 perm/sec)   p_kst 1.632000e-02   p_cons 9.026000e-01   p_joint 5.592000e-02

Joint ci ratio: 6.621815e-02	ci left: 5.335309e-02	ci right 5.702341e-02	k: 3310	n:60000
Cons ci ratio: 5.070909e-03	ci left: 9.064346e-01	ci right 9.110592e-01	k: 54526	n:60000
KS ci ratio: 1.243210e-01	ci left: 1.528575e-02	ci right 1.732809e-02	k: 977	n:60000
SLC4A11   60000 perm   15 sec   (3980 perm/sec)   p_kst 1.628333e-02   p_cons 9.087667e-01   p_joint 5.516667e-02

Joint ci ratio: 5.906390e-02	ci left: 5.744880e-02	ci right 6.095928e-02	k: 4143	n:70000
Cons ci ratio: 4.703872e-03	ci left: 9.062823e-01	ci right 9.105695e-01	k: 63591	n:70000
KS ci ratio: 1.148435e-01	ci left: 1.543043e-02	ci right 1.732426e-02	k: 1145	n:70000
SLC4A11   70000 perm   18 sec   (3961 perm/sec)   p_kst 1.635714e-02   p_cons 9.084429e-01   p_joint 5.918571e-02

Joint ci ratio: 6.317820e-02	ci left: 4.446011e-02	ci right 4.737293e-02	k: 3672	n:80000
Cons ci ratio: 4.394562e-03	ci left: 9.066325e-01	ci right 9.106378e-01	k: 72692	n:80000
KS ci ratio: 1.066310e-01	ci left: 1.572595e-02	ci right 1.750936e-02	k: 1328	n:80000
SLC4A11   80000 perm   20 sec   (3925 perm/sec)   p_kst 1.660000e-02   p_cons 9.086500e-01   p_joint 4.590000e-02

Joint ci ratio: 5.908053e-02	ci left: 4.525391e-02	ci right 4.801985e-02	k: 4196	n:90000
Cons ci ratio: 4.131141e-03	ci left: 9.072368e-01	ci right 9.110035e-01	k: 81822	n:90000
KS ci ratio: 9.985987e-02	ci left: 1.599206e-02	ci right 1.768373e-02	k: 1514	n:90000
SLC4A11   90000 perm   23 sec   (3882 perm/sec)   p_kst 1.682222e-02   p_cons 9.091333e-01   p_joint 4.662222e-02

Outputting figure to mutsig2_images.part000000000161/SLC4A11.4_2975_90000_0.016822_0.90913_0.046622.png
                gene_name: SLC4A11
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 51 percent done.
SLC5A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
Cons ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
SLC5A5   10000 perm   2 sec   (5634 perm/sec)   p_kst 6.990000e-02   p_cons 5.020000e-02   p_joint 3.110000e-02

Joint ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
Cons ci ratio: 1.208834e-01	ci left: 4.692297e-02	ci right 5.300872e-02	k: 998	n:20000
KS ci ratio: 9.855520e-02	ci left: 6.967630e-02	ci right 7.694833e-02	k: 1465	n:20000
SLC5A5   20000 perm   4 sec   (5094 perm/sec)   p_kst 7.325000e-02   p_cons 4.990000e-02   p_joint 3.570000e-02

Joint ci ratio: 1.505461e-01	ci left: 2.043410e-02	ci right 2.379267e-02	k: 662	n:30000
Cons ci ratio: 9.806613e-02	ci left: 4.808163e-02	ci right 5.307253e-02	k: 1516	n:30000
KS ci ratio: 8.086807e-02	ci left: 6.968860e-02	ci right 7.559449e-02	k: 2178	n:30000
SLC5A5   30000 perm   6 sec   (4860 perm/sec)   p_kst 7.260000e-02   p_cons 5.053333e-02   p_joint 2.206667e-02

Joint ci ratio: 1.819149e-01	ci left: 1.043048e-02	ci right 1.254134e-02	k: 458	n:40000
Cons ci ratio: 8.443822e-02	ci left: 4.896221e-02	ci right 5.330325e-02	k: 2044	n:40000
KS ci ratio: 7.043131e-02	ci left: 6.933795e-02	ci right 7.442442e-02	k: 2874	n:40000
SLC5A5   40000 perm   9 sec   (4700 perm/sec)   p_kst 7.185000e-02   p_cons 5.110000e-02   p_joint 1.145000e-02

Joint ci ratio: 9.927462e-02	ci left: 2.873679e-02	ci right 3.175808e-02	k: 1511	n:50000
Cons ci ratio: 7.330291e-02	ci left: 5.211345e-02	ci right 5.609851e-02	k: 2704	n:50000
KS ci ratio: 6.300290e-02	ci left: 6.959152e-02	ci right 7.413834e-02	k: 3592	n:50000
SLC5A5   50000 perm   11 sec   (4576 perm/sec)   p_kst 7.184000e-02   p_cons 5.408000e-02   p_joint 3.022000e-02

Outputting figure to mutsig2_images.part000000000161/SLC5A5.4_1992_50000_0.07184_0.05408_0.03022.png
                gene_name: SLC5A5
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 52 percent done.
SLC6A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
SLC6A13   10000 perm   2 sec   (5198 perm/sec)   p_kst 3.439000e-01   p_cons 5.538000e-01   p_joint 5.190000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A13.4_1865_10000_0.3439_0.5538_0.519.png
                gene_name: SLC6A13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 54 percent done.
SLC6A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
Cons ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
SLC6A8   10000 perm   2 sec   (5830 perm/sec)   p_kst 2.293000e-01   p_cons 5.890000e-02   p_joint 1.978000e-01

Joint ci ratio: 7.814601e-02	ci left: 1.073661e-01	ci right 1.161471e-01	k: 2234	n:20000
Cons ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
KS ci ratio: 5.192711e-02	ci left: 2.159589e-01	ci right 2.275221e-01	k: 4434	n:20000
SLC6A8   20000 perm   4 sec   (5185 perm/sec)   p_kst 2.217000e-01   p_cons 5.680000e-02   p_joint 1.117000e-01

Joint ci ratio: 6.558744e-02	ci left: 1.028995e-01	ci right 1.099103e-01	k: 3191	n:30000
Cons ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
KS ci ratio: 4.105073e-02	ci left: 2.282919e-01	ci right 2.378932e-01	k: 6992	n:30000
SLC6A8   30000 perm   6 sec   (4960 perm/sec)   p_kst 2.330667e-01   p_cons 5.763333e-02   p_joint 1.063667e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A8.4_1960_30000_0.23307_0.057633_0.10637.png
                gene_name: SLC6A8
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
SLC6A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
Cons ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
KS ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
SLC6A9   10000 perm   2 sec   (5599 perm/sec)   p_kst 6.843000e-01   p_cons 6.589000e-01   p_joint 9.827000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A9.4_2211_10000_0.6843_0.6589_0.9827.png
                gene_name: SLC6A9
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 56 percent done.
SLC7A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
SLC7A3   10000 perm   2 sec   (6152 perm/sec)   p_kst 8.188000e-01   p_cons 6.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A3.4_1904_10000_0.8188_0.6764_1.png
                gene_name: SLC7A3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SLC39A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
SLC39A8   10000 perm   2 sec   (6469 perm/sec)   p_kst 5.310000e-01   p_cons 4.870000e-02   p_joint 4.952000e-01

Joint ci ratio: 5.621045e-02	ci left: 1.900727e-01	ci right 2.011159e-01	k: 3911	n:20000
Cons ci ratio: 1.219798e-01	ci left: 4.609757e-02	ci right 5.213438e-02	k: 981	n:20000
KS ci ratio: 2.616363e-02	ci left: 5.218532e-01	ci right 5.357384e-01	k: 10576	n:20000
SLC39A8   20000 perm   3 sec   (5720 perm/sec)   p_kst 5.288000e-01   p_cons 4.905000e-02   p_joint 1.955500e-01

Joint ci ratio: 3.719799e-02	ci left: 2.651146e-01	ci right 2.751967e-01	k: 8104	n:30000
Cons ci ratio: 1.001703e-01	ci left: 4.612881e-02	ci right 5.102575e-02	k: 1456	n:30000
KS ci ratio: 2.124754e-02	ci left: 5.258338e-01	ci right 5.371601e-01	k: 15945	n:30000
SLC39A8   30000 perm   6 sec   (5442 perm/sec)   p_kst 5.315000e-01   p_cons 4.853333e-02   p_joint 2.701333e-01

Joint ci ratio: 5.240268e-02	ci left: 1.194997e-01	ci right 1.259552e-01	k: 4908	n:40000
Cons ci ratio: 8.572714e-02	ci left: 4.754153e-02	ci right 5.182415e-02	k: 1986	n:40000
KS ci ratio: 1.782700e-02	ci left: 5.423562e-01	ci right 5.521369e-01	k: 21890	n:40000
SLC39A8   40000 perm   8 sec   (5254 perm/sec)   p_kst 5.472500e-01   p_cons 4.965000e-02   p_joint 1.227000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A8.3_1514_40000_0.54725_0.04965_0.1227.png
                gene_name: SLC39A8
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 59 percent done.
SLC3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
KS ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
SLC3A2   10000 perm   2 sec   (6521 perm/sec)   p_kst 5.880000e-02   p_cons 6.962000e-01   p_joint 1.218000e-01

Joint ci ratio: 7.295216e-02	ci left: 1.215289e-01	ci right 1.307801e-01	k: 2522	n:20000
Cons ci ratio: 1.886796e-02	ci left: 6.768519e-01	ci right 6.897948e-01	k: 13667	n:20000
KS ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
SLC3A2   20000 perm   3 sec   (5799 perm/sec)   p_kst 5.860000e-02   p_cons 6.833500e-01   p_joint 1.261000e-01

Joint ci ratio: 5.851301e-02	ci left: 1.263125e-01	ci right 1.339593e-01	k: 3903	n:30000
Cons ci ratio: 1.535776e-02	ci left: 6.794079e-01	ci right 6.899563e-01	k: 20541	n:30000
KS ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
SLC3A2   30000 perm   5 sec   (5514 perm/sec)   p_kst 5.900000e-02   p_cons 6.847000e-01   p_joint 1.301000e-01

Outputting figure to mutsig2_images.part000000000161/SLC3A2.3_2041_30000_0.059_0.6847_0.1301.png
                gene_name: SLC3A2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 61 percent done.
SLC40A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
Cons ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
KS ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
SLC40A1   10000 perm   2 sec   (6281 perm/sec)   p_kst 3.150000e-01   p_cons 3.472000e-01   p_joint 2.715000e-01

Outputting figure to mutsig2_images.part000000000161/SLC40A1.3_1748_10000_0.315_0.3472_0.2715.png
                gene_name: SLC40A1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
SLC4A1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.557553e-02	ci left: 6.923226e-01	ci right 7.103600e-01	k: 7014	n:10000
KS ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
SLC4A1AP   10000 perm   2 sec   (6046 perm/sec)   p_kst 6.804000e-01   p_cons 7.014000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A1AP.3_2447_10000_0.6804_0.7014_1.png
                gene_name: SLC4A1AP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SLC4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
SLC4A7   10000 perm   2 sec   (5393 perm/sec)   p_kst 2.331000e-01   p_cons 3.894000e-01   p_joint 2.331000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A7.3_3745_10000_0.2331_0.3894_0.2331.png
                gene_name: SLC4A7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 65 percent done.
SLC6A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
SLC6A12   10000 perm   2 sec   (6088 perm/sec)   p_kst 7.943000e-01   p_cons 9.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A12.3_1901_10000_0.7943_0.9177_1.png
                gene_name: SLC6A12
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SLC6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
Cons ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
KS ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
SLC6A3   10000 perm   2 sec   (6251 perm/sec)   p_kst 2.085000e-01   p_cons 5.770000e-02   p_joint 6.440000e-02

Joint ci ratio: 6.519175e-02	ci left: 1.480859e-01	ci right 1.581151e-01	k: 3061	n:20000
Cons ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
KS ci ratio: 5.423567e-02	ci left: 2.014523e-01	ci right 2.127330e-01	k: 4141	n:20000
SLC6A3   20000 perm   4 sec   (5561 perm/sec)   p_kst 2.070500e-01   p_cons 5.840000e-02   p_joint 1.530500e-01

Joint ci ratio: 5.450309e-02	ci left: 1.430436e-01	ci right 1.510915e-01	k: 4411	n:30000
Cons ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
KS ci ratio: 4.410888e-02	ci left: 2.037826e-01	ci right 2.130073e-01	k: 6251	n:30000
SLC6A3   30000 perm   6 sec   (5295 perm/sec)   p_kst 2.083667e-01   p_cons 5.790000e-02   p_joint 1.470333e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A3.3_1919_30000_0.20837_0.0579_0.14703.png
                gene_name: SLC6A3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 68 percent done.
SLC7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
SLC7A1   10000 perm   2 sec   (5860 perm/sec)   p_kst 7.806000e-01   p_cons 2.877000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A1.3_1934_10000_0.7806_0.2877_1.png
                gene_name: SLC7A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SLC7A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
Cons ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
KS ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
SLC7A7   10000 perm   2 sec   (6411 perm/sec)   p_kst 4.252000e-01   p_cons 7.003000e-01   p_joint 5.143000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A7.3_1572_10000_0.4252_0.7003_0.5143.png
                gene_name: SLC7A7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 70 percent done.
SLC7A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
Cons ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
KS ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
SLC7A9   10000 perm   2 sec   (6188 perm/sec)   p_kst 2.696000e-01   p_cons 4.803000e-01   p_joint 4.928000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A9.3_1512_10000_0.2696_0.4803_0.4928.png
                gene_name: SLC7A9
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 72 percent done.
SLC8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
Cons ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
KS ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
SLC8A2   10000 perm   2 sec   (5846 perm/sec)   p_kst 5.444000e-01   p_cons 7.623000e-01   p_joint 8.185000e-01

Outputting figure to mutsig2_images.part000000000161/SLC8A2.3_2802_10000_0.5444_0.7623_0.8185.png
                gene_name: SLC8A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 73 percent done.
SLC9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
Cons ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
KS ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
SLC9A1   10000 perm   2 sec   (5829 perm/sec)   p_kst 4.580000e-01   p_cons 7.548000e-01   p_joint 7.005000e-01

Outputting figure to mutsig2_images.part000000000161/SLC9A1.3_2496_10000_0.458_0.7548_0.7005.png
                gene_name: SLC9A1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 75 percent done.
SLC39A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
KS ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
SLC39A9   10000 perm   1 sec   (6936 perm/sec)   p_kst 6.510000e-01   p_cons 8.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC39A9.2_952_10000_0.651_0.8717_1.png
                gene_name: SLC39A9
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
SLC41A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLC41A1   10000 perm   2 sec   (6658 perm/sec)   p_kst 1   p_cons 6.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC41A1.2_1582_10000_1_0.6686_1.png
                gene_name: SLC41A1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SLC43A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
Cons ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
KS ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
SLC43A1   10000 perm   2 sec   (6524 perm/sec)   p_kst 1.145000e-01   p_cons 5.800000e-03   p_joint 2.280000e-02

Joint ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
Cons ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
KS ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
SLC43A1   20000 perm   3 sec   (5766 perm/sec)   p_kst 1.135500e-01   p_cons 6.250000e-03   p_joint 5.010000e-02

Joint ci ratio: 1.288374e-01	ci left: 2.800174e-02	ci right 3.188999e-02	k: 897	n:30000
Cons ci ratio: 2.873094e-01	ci left: 5.281277e-03	ci right 7.083037e-03	k: 184	n:30000
KS ci ratio: 6.341834e-02	ci left: 1.093727e-01	ci right 1.165691e-01	k: 3388	n:30000
SLC43A1   30000 perm   5 sec   (5498 perm/sec)   p_kst 1.129333e-01   p_cons 6.133333e-03   p_joint 2.990000e-02

Joint ci ratio: 7.818649e-02	ci left: 5.680866e-02	ci right 6.145560e-02	k: 2364	n:40000
Cons ci ratio: 2.442117e-01	ci left: 5.618552e-03	ci right 7.204386e-03	k: 255	n:40000
KS ci ratio: 5.520943e-02	ci left: 1.088264e-01	ci right 1.150300e-01	k: 4476	n:40000
SLC43A1   40000 perm   8 sec   (5320 perm/sec)   p_kst 1.119000e-01   p_cons 6.375000e-03   p_joint 5.910000e-02

Joint ci ratio: 6.644477e-02	ci left: 6.291351e-02	ci right 6.725715e-02	k: 3253	n:50000
Cons ci ratio: 2.177464e-01	ci left: 5.738724e-03	ci right 7.159492e-03	k: 321	n:50000
KS ci ratio: 4.936229e-02	ci left: 1.092285e-01	ci right 1.147766e-01	k: 5599	n:50000
SLC43A1   50000 perm   10 sec   (5187 perm/sec)   p_kst 1.119800e-01   p_cons 6.420000e-03   p_joint 6.506000e-02

Joint ci ratio: 6.285182e-02	ci left: 5.896656e-02	ci right 6.280938e-02	k: 3652	n:60000
Cons ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
KS ci ratio: 4.484009e-02	ci left: 1.104442e-01	ci right 1.155266e-01	k: 6778	n:60000
SLC43A1   60000 perm   12 sec   (5071 perm/sec)   p_kst 1.129667e-01   p_cons 6.366667e-03   p_joint 6.086667e-02

Joint ci ratio: 6.018334e-02	ci left: 5.542051e-02	ci right 5.887346e-02	k: 3999	n:70000
Cons ci ratio: 1.888989e-01	ci left: 5.536593e-03	ci right 6.704915e-03	k: 427	n:70000
KS ci ratio: 4.149270e-02	ci left: 1.107344e-01	ci right 1.154406e-01	k: 7915	n:70000
SLC43A1   70000 perm   14 sec   (4964 perm/sec)   p_kst 1.130714e-01   p_cons 6.100000e-03   p_joint 5.712857e-02

Joint ci ratio: 8.201540e-02	ci left: 2.662269e-02	ci right 2.891173e-02	k: 2220	n:80000
Cons ci ratio: 1.763623e-01	ci left: 5.596065e-03	ci right 6.690214e-03	k: 490	n:80000
KS ci ratio: 3.888528e-02	ci left: 1.105165e-01	ci right 1.149116e-01	k: 9016	n:80000
SLC43A1   80000 perm   16 sec   (4861 perm/sec)   p_kst 1.127000e-01   p_cons 6.125000e-03   p_joint 2.775000e-02

Joint ci ratio: 7.249273e-02	ci left: 3.032478e-02	ci right 3.261666e-02	k: 2831	n:90000
Cons ci ratio: 1.657298e-01	ci left: 5.665623e-03	ci right 6.699927e-03	k: 555	n:90000
KS ci ratio: 3.660881e-02	ci left: 1.109275e-01	ci right 1.150752e-01	k: 10169	n:90000
SLC43A1   90000 perm   19 sec   (4767 perm/sec)   p_kst 1.129889e-01   p_cons 6.166667e-03   p_joint 3.145556e-02

Joint ci ratio: 5.853672e-02	ci left: 4.166223e-02	ci right 4.418437e-02	k: 4291	n:100000
Cons ci ratio: 1.561828e-01	ci left: 5.770908e-03	ci right 6.758059e-03	k: 625	n:100000
KS ci ratio: 3.476487e-02	ci left: 1.108356e-01	ci right 1.147669e-01	k: 11279	n:100000
SLC43A1   100000 perm   21 sec   (4667 perm/sec)   p_kst 1.127900e-01   p_cons 6.250000e-03   p_joint 4.291000e-02

Joint ci ratio: 6.132997e-02	ci left: 3.470977e-02	ci right 3.691479e-02	k: 3938	n:110000
Cons ci ratio: 1.501928e-01	ci left: 5.692130e-03	ci right 6.625105e-03	k: 676	n:110000
KS ci ratio: 3.316359e-02	ci left: 1.108279e-01	ci right 1.145743e-01	k: 12396	n:110000
SLC43A1   110000 perm   24 sec   (4573 perm/sec)   p_kst 1.126909e-01   p_cons 6.145455e-03   p_joint 3.580000e-02

Joint ci ratio: 6.065684e-02	ci left: 3.261221e-02	ci right 3.466041e-02	k: 4035	n:120000
Cons ci ratio: 1.424032e-01	ci left: 5.827976e-03	ci right 6.729467e-03	k: 752	n:120000
KS ci ratio: 3.175305e-02	ci left: 1.108995e-01	ci right 1.144859e-01	k: 13522	n:120000
SLC43A1   120000 perm   27 sec   (4484 perm/sec)   p_kst 1.126833e-01   p_cons 6.266667e-03   p_joint 3.362500e-02

Joint ci ratio: 6.695135e-02	ci left: 2.483143e-02	ci right 2.655904e-02	k: 3339	n:130000
Cons ci ratio: 1.380785e-01	ci left: 5.735928e-03	ci right 6.594017e-03	k: 800	n:130000
KS ci ratio: 3.050256e-02	ci left: 1.110011e-01	ci right 1.144470e-01	k: 14653	n:130000
SLC43A1   130000 perm   30 sec   (4397 perm/sec)   p_kst 1.127154e-01   p_cons 6.153846e-03   p_joint 2.568462e-02

Joint ci ratio: 6.448764e-02	ci left: 2.488440e-02	ci right 2.654961e-02	k: 3599	n:140000
Cons ci ratio: 1.333373e-01	ci left: 5.726439e-03	ci right 6.551360e-03	k: 858	n:140000
KS ci ratio: 2.934298e-02	ci left: 1.114028e-01	ci right 1.147275e-01	k: 15828	n:140000
SLC43A1   140000 perm   33 sec   (4293 perm/sec)   p_kst 1.130571e-01   p_cons 6.128571e-03   p_joint 2.570714e-02

Joint ci ratio: 6.228561e-02	ci left: 2.492476e-02	ci right 2.653365e-02	k: 3858	n:150000
Cons ci ratio: 1.287005e-01	ci left: 5.750916e-03	ci right 6.548354e-03	k: 921	n:150000
KS ci ratio: 2.834203e-02	ci left: 1.115014e-01	ci right 1.147136e-01	k: 16965	n:150000
SLC43A1   150000 perm   36 sec   (4213 perm/sec)   p_kst 1.131000e-01   p_cons 6.140000e-03   p_joint 2.572000e-02

Joint ci ratio: 6.016741e-02	ci left: 2.506560e-02	ci right 2.662664e-02	k: 4134	n:160000
Cons ci ratio: 1.241994e-01	ci left: 5.803052e-03	ci right 6.577506e-03	k: 989	n:160000
KS ci ratio: 2.744297e-02	ci left: 1.115458e-01	ci right 1.146557e-01	k: 18095	n:160000
SLC43A1   160000 perm   39 sec   (4148 perm/sec)   p_kst 1.130938e-01   p_cons 6.181250e-03   p_joint 2.583750e-02

Joint ci ratio: 5.096507e-02	ci left: 3.277167e-02	ci right 3.449134e-02	k: 5716	n:170000
Cons ci ratio: 1.209475e-01	ci left: 5.769598e-03	ci right 6.517983e-03	k: 1043	n:170000
KS ci ratio: 2.658463e-02	ci left: 1.118847e-01	ci right 1.149050e-01	k: 19276	n:170000
SLC43A1   170000 perm   42 sec   (4086 perm/sec)   p_kst 1.133882e-01   p_cons 6.135294e-03   p_joint 3.362353e-02

Joint ci ratio: 5.673188e-02	ci left: 2.510534e-02	ci right 2.657665e-02	k: 4650	n:180000
Cons ci ratio: 1.172421e-01	ci left: 5.810206e-03	ci right 6.539169e-03	k: 1110	n:180000
KS ci ratio: 2.579000e-02	ci left: 1.122811e-01	ci right 1.152202e-01	k: 20474	n:180000
SLC43A1   180000 perm   45 sec   (4022 perm/sec)   p_kst 1.137444e-01   p_cons 6.166667e-03   p_joint 2.583333e-02

Joint ci ratio: 4.815976e-02	ci left: 3.288267e-02	ci right 3.451054e-02	k: 6401	n:190000
Cons ci ratio: 1.141015e-01	ci left: 5.821282e-03	ci right 6.530753e-03	k: 1172	n:190000
KS ci ratio: 2.510378e-02	ci left: 1.123073e-01	ci right 1.151677e-01	k: 21609	n:190000
SLC43A1   190000 perm   48 sec   (3960 perm/sec)   p_kst 1.137316e-01   p_cons 6.168421e-03   p_joint 3.368947e-02

Joint ci ratio: 4.697623e-02	ci left: 3.285408e-02	ci right 3.443948e-02	k: 6728	n:200000
Cons ci ratio: 1.113366e-01	ci left: 5.816900e-03	ci right 6.507531e-03	k: 1231	n:200000
KS ci ratio: 2.448234e-02	ci left: 1.122273e-01	ci right 1.150139e-01	k: 22723	n:200000
SLC43A1   200000 perm   51 sec   (3901 perm/sec)   p_kst 1.136150e-01   p_cons 6.155000e-03   p_joint 3.364000e-02

Joint ci ratio: 4.590280e-02	ci left: 3.279098e-02	ci right 3.433622e-02	k: 7047	n:210000
Cons ci ratio: 1.090186e-01	ci left: 5.785326e-03	ci right 6.456988e-03	k: 1284	n:210000
KS ci ratio: 2.389356e-02	ci left: 1.122505e-01	ci right 1.149697e-01	k: 23857	n:210000
SLC43A1   210000 perm   55 sec   (3846 perm/sec)   p_kst 1.136048e-01   p_cons 6.114286e-03   p_joint 3.355714e-02

Joint ci ratio: 4.480857e-02	ci left: 3.286438e-02	ci right 3.437521e-02	k: 7395	n:220000
Cons ci ratio: 1.062026e-01	ci left: 5.827558e-03	ci right 6.485555e-03	k: 1353	n:220000
KS ci ratio: 2.333005e-02	ci left: 1.124035e-01	ci right 1.150613e-01	k: 25020	n:220000
SLC43A1   220000 perm   58 sec   (3791 perm/sec)   p_kst 1.137273e-01   p_cons 6.150000e-03   p_joint 3.361364e-02

Joint ci ratio: 4.382711e-02	ci left: 3.287588e-02	ci right 3.435329e-02	k: 7730	n:230000
Cons ci ratio: 1.031935e-01	ci left: 5.912918e-03	ci right 6.560490e-03	k: 1433	n:230000
KS ci ratio: 2.280461e-02	ci left: 1.125438e-01	ci right 1.151442e-01	k: 26183	n:230000
SLC43A1   230000 perm   62 sec   (3740 perm/sec)   p_kst 1.138391e-01   p_cons 6.230435e-03   p_joint 3.360870e-02

Joint ci ratio: 4.285799e-02	ci left: 3.296097e-02	ci right 3.440865e-02	k: 8083	n:240000
Cons ci ratio: 1.011006e-01	ci left: 5.910159e-03	ci right 6.543521e-03	k: 1493	n:240000
KS ci ratio: 2.234219e-02	ci left: 1.124118e-01	ci right 1.149558e-01	k: 27283	n:240000
SLC43A1   240000 perm   65 sec   (3689 perm/sec)   p_kst 1.136792e-01   p_cons 6.220833e-03   p_joint 3.367917e-02

Joint ci ratio: 4.194272e-02	ci left: 3.305147e-02	ci right 3.447137e-02	k: 8439	n:250000
Cons ci ratio: 9.922656e-02	ci left: 5.896039e-03	ci right 6.515493e-03	k: 1550	n:250000
KS ci ratio: 2.190376e-02	ci left: 1.123188e-01	ci right 1.148102e-01	k: 28390	n:250000
SLC43A1   250000 perm   69 sec   (3640 perm/sec)   p_kst 1.135600e-01   p_cons 6.200000e-03   p_joint 3.375600e-02

Outputting figure to mutsig2_images.part000000000161/SLC43A1.2_1736_250000_0.11356_0.0062_0.033756.png
                gene_name: SLC43A1
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0059 
     ci_cons_bounds_right: 0.0065 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.034 

Current progress: 79 percent done.
SLC43A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
Cons ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
KS ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
SLC43A3   10000 perm   2 sec   (6613 perm/sec)   p_kst 1.267000e-01   p_cons 7.680000e-01   p_joint 5.525000e-01

Joint ci ratio: 4.333941e-02	ci left: 2.839655e-01	ci right 2.965955e-01	k: 5805	n:20000
Cons ci ratio: 1.597973e-02	ci left: 7.444921e-01	ci right 7.565350e-01	k: 15011	n:20000
KS ci ratio: 7.218476e-02	ci left: 1.238421e-01	ci right 1.331661e-01	k: 2569	n:20000
SLC43A3   20000 perm   3 sec   (5858 perm/sec)   p_kst 1.284500e-01   p_cons 7.505500e-01   p_joint 2.902500e-01

Outputting figure to mutsig2_images.part000000000161/SLC43A3.2_1524_20000_0.12845_0.75055_0.29025.png
                gene_name: SLC43A3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 80 percent done.
SLC44A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
KS ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
SLC44A4   10000 perm   2 sec   (6273 perm/sec)   p_kst 7.408000e-01   p_cons 1.622000e-01   p_joint 3.070000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A4.2_2217_10000_0.7408_0.1622_0.307.png
                gene_name: SLC44A4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 82 percent done.
SLC45A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
KS ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
SLC45A4   10000 perm   2 sec   (6186 perm/sec)   p_kst 9.734000e-01   p_cons 5.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC45A4.2_2429_10000_0.9734_0.5307_1.png
                gene_name: SLC45A4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SLC47A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.244464e-02	ci left: 9.026794e-01	ci right 9.140814e-01	k: 9085	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
SLC47A1   10000 perm   2 sec   (6557 perm/sec)   p_kst 6.818000e-01   p_cons 1.286000e-01   p_joint 9.085000e-01

Joint ci ratio: 2.019174e-02	ci left: 6.466573e-01	ci right 6.598981e-01	k: 13066	n:20000
Cons ci ratio: 7.181649e-02	ci left: 1.249743e-01	ci right 1.343336e-01	k: 2592	n:20000
KS ci ratio: 1.911252e-02	ci left: 6.712227e-01	ci right 6.842256e-01	k: 13555	n:20000
SLC47A1   20000 perm   3 sec   (5765 perm/sec)   p_kst 6.777500e-01   p_cons 1.296000e-01   p_joint 6.533000e-01

Outputting figure to mutsig2_images.part000000000161/SLC47A1.2_1781_20000_0.67775_0.1296_0.6533.png
                gene_name: SLC47A1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 85 percent done.
SLC47A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
SLC47A2   10000 perm   2 sec   (6325 perm/sec)   p_kst 2.230000e-01   p_cons 7.452000e-01   p_joint 5.516000e-01

Outputting figure to mutsig2_images.part000000000161/SLC47A2.2_1877_10000_0.223_0.7452_0.5516.png
                gene_name: SLC47A2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 86 percent done.
SLC4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
KS ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
SLC4A2   10000 perm   2 sec   (5520 perm/sec)   p_kst 3.679000e-01   p_cons 6.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A2.2_3814_10000_0.3679_0.6775_1.png
                gene_name: SLC4A2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SLC4A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
SLC4A9   10000 perm   2 sec   (5833 perm/sec)   p_kst 8.812000e-01   p_cons 7.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A9.2_2964_10000_0.8812_0.7769_1.png
                gene_name: SLC4A9
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SLC5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
KS ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
SLC5A2   10000 perm   2 sec   (6441 perm/sec)   p_kst 1.000000e-02   p_cons 1.835000e-01   p_joint 1.390000e-02

Joint ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
Cons ci ratio: 5.874355e-02	ci left: 1.767235e-01	ci right 1.874691e-01	k: 3641	n:20000
KS ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
SLC5A2   20000 perm   3 sec   (5716 perm/sec)   p_kst 1.020000e-02   p_cons 1.820500e-01   p_joint 1.020000e-02

Joint ci ratio: 1.201466e-01	ci left: 3.220433e-02	ci right 3.635316e-02	k: 1027	n:30000
Cons ci ratio: 4.781971e-02	ci left: 1.786057e-01	ci right 1.873891e-01	k: 5489	n:30000
KS ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
SLC5A2   30000 perm   6 sec   (5439 perm/sec)   p_kst 1.030000e-02   p_cons 1.829667e-01   p_joint 3.423333e-02

Joint ci ratio: 1.024613e-01	ci left: 3.348849e-02	ci right 3.712938e-02	k: 1411	n:40000
Cons ci ratio: 4.140625e-02	ci left: 1.792461e-01	ci right 1.868499e-01	k: 7321	n:40000
KS ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
SLC5A2   40000 perm   8 sec   (5254 perm/sec)   p_kst 1.005000e-02   p_cons 1.830250e-01   p_joint 3.527500e-02

Joint ci ratio: 6.025525e-02	ci left: 7.568369e-02	ci right 8.040544e-02	k: 3901	n:50000
Cons ci ratio: 3.686862e-02	ci left: 1.809893e-01	ci right 1.878074e-01	k: 9219	n:50000
KS ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
SLC5A2   50000 perm   10 sec   (5105 perm/sec)   p_kst 9.960000e-03   p_cons 1.843800e-01   p_joint 7.802000e-02

Joint ci ratio: 5.789498e-02	ci left: 6.892458e-02	ci right 7.305037e-02	k: 4258	n:60000
Cons ci ratio: 3.362837e-02	ci left: 1.815357e-01	ci right 1.877615e-01	k: 11078	n:60000
KS ci ratio: 1.603129e-01	ci left: 9.075238e-03	ci right 1.067271e-02	k: 591	n:60000
SLC5A2   60000 perm   12 sec   (4989 perm/sec)   p_kst 9.850000e-03   p_cons 1.846333e-01   p_joint 7.096667e-02

Joint ci ratio: 5.112228e-02	ci left: 7.550140e-02	ci right 7.947657e-02	k: 5423	n:70000
Cons ci ratio: 3.117600e-02	ci left: 1.813627e-01	ci right 1.871206e-01	k: 12896	n:70000
KS ci ratio: 1.489301e-01	ci left: 9.069725e-03	ci right 1.054276e-02	k: 685	n:70000
SLC5A2   70000 perm   14 sec   (4880 perm/sec)   p_kst 9.785714e-03   p_cons 1.842286e-01   p_joint 7.747143e-02

Joint ci ratio: 4.745169e-02	ci left: 7.673186e-02	ci right 8.047376e-02	k: 6287	n:80000
Cons ci ratio: 2.921162e-02	ci left: 1.810467e-01	ci right 1.864262e-01	k: 14698	n:80000
KS ci ratio: 1.383347e-01	ci left: 9.249653e-03	ci right 1.063623e-02	k: 794	n:80000
SLC5A2   80000 perm   17 sec   (4782 perm/sec)   p_kst 9.925000e-03   p_cons 1.837250e-01   p_joint 7.858750e-02

Joint ci ratio: 4.464891e-02	ci left: 7.712480e-02	ci right 8.065795e-02	k: 7099	n:90000
Cons ci ratio: 2.749148e-02	ci left: 1.817384e-01	ci right 1.868153e-01	k: 16584	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
SLC5A2   90000 perm   19 sec   (4690 perm/sec)   p_kst 1.001111e-02   p_cons 1.842667e-01   p_joint 7.887778e-02

Joint ci ratio: 2.288940e-02	ci left: 2.241776e-01	ci right 2.293782e-01	k: 22677	n:100000
Cons ci ratio: 2.612834e-02	ci left: 1.813240e-01	ci right 1.861344e-01	k: 18372	n:100000
KS ci ratio: 1.232149e-01	ci left: 9.402251e-03	ci right 1.064642e-02	k: 1001	n:100000
SLC5A2   100000 perm   22 sec   (4600 perm/sec)   p_kst 1.001000e-02   p_cons 1.837200e-01   p_joint 2.267700e-01

Joint ci ratio: 2.287712e-02	ci left: 2.082660e-01	ci right 2.130947e-01	k: 23174	n:110000
Cons ci ratio: 2.488773e-02	ci left: 1.817321e-01	ci right 1.863210e-01	k: 20242	n:110000
KS ci ratio: 1.170099e-01	ci left: 9.508679e-03	ci right 1.069918e-02	k: 1110	n:110000
SLC5A2   110000 perm   24 sec   (4514 perm/sec)   p_kst 1.009091e-02   p_cons 1.840182e-01   p_joint 2.106727e-01

Joint ci ratio: 1.120752e-01	ci left: 9.525757e-03	ci right 1.066477e-02	k: 1210	n:120000
Cons ci ratio: 2.380130e-02	ci left: 1.821678e-01	ci right 1.865641e-01	k: 22123	n:120000
KS ci ratio: 1.120752e-01	ci left: 9.525757e-03	ci right 1.066477e-02	k: 1210	n:120000
SLC5A2   120000 perm   27 sec   (4382 perm/sec)   p_kst 1.008333e-02   p_cons 1.843583e-01   p_joint 1.008333e-02

Joint ci ratio: 1.074271e-01	ci left: 9.593511e-03	ci right 1.069004e-02	k: 1317	n:130000
Cons ci ratio: 2.282592e-02	ci left: 1.828005e-01	ci right 1.870289e-01	k: 24038	n:130000
KS ci ratio: 1.074271e-01	ci left: 9.593511e-03	ci right 1.069004e-02	k: 1317	n:130000
SLC5A2   130000 perm   30 sec   (4285 perm/sec)   p_kst 1.013077e-02   p_cons 1.849077e-01   p_joint 1.013077e-02

Joint ci ratio: 1.032765e-01	ci left: 9.659382e-03	ci right 1.071820e-02	k: 1425	n:140000
Cons ci ratio: 2.196239e-02	ci left: 1.833317e-01	ci right 1.874099e-01	k: 25951	n:140000
KS ci ratio: 1.032765e-01	ci left: 9.659382e-03	ci right 1.071820e-02	k: 1425	n:140000
SLC5A2   140000 perm   33 sec   (4225 perm/sec)   p_kst 1.017857e-02   p_cons 1.853643e-01   p_joint 1.017857e-02

Joint ci ratio: 9.970402e-02	ci left: 9.691166e-03	ci right 1.071457e-02	k: 1529	n:150000
Cons ci ratio: 2.119136e-02	ci left: 1.837747e-01	ci right 1.877175e-01	k: 27861	n:150000
KS ci ratio: 9.970402e-02	ci left: 9.691166e-03	ci right 1.071457e-02	k: 1529	n:150000
SLC5A2   150000 perm   36 sec   (4165 perm/sec)   p_kst 1.019333e-02   p_cons 1.857400e-01   p_joint 1.019333e-02

Outputting figure to mutsig2_images.part000000000161/SLC5A2.2_2075_150000_0.010193_0.18574_0.010193.png
                gene_name: SLC5A2
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0097 
    ci_joint_bounds_right: 0.011 

Current progress: 90 percent done.
SLC5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
SLC5A3   10000 perm   2 sec   (6225 perm/sec)   p_kst 6.012000e-01   p_cons 4.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A3.2_2161_10000_0.6012_0.4055_1.png
                gene_name: SLC5A3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SLC5A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
SLC5A6   10000 perm   2 sec   (6368 perm/sec)   p_kst 4.022000e-01   p_cons 9.030000e-02   p_joint 6.234000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
KS ci ratio: 3.363579e-02	ci left: 3.975876e-01	ci right 4.112402e-01	k: 8088	n:20000
SLC5A6   20000 perm   4 sec   (5698 perm/sec)   p_kst 4.044000e-01   p_cons 9.295000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A6.2_1968_20000_0.4044_0.09295_1.png
                gene_name: SLC5A6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SLC5A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
KS ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
SLC5A9   10000 perm   2 sec   (5667 perm/sec)   p_kst 7.653000e-01   p_cons 5.351000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A9.2_2181_10000_0.7653_0.5351_1.png
                gene_name: SLC5A9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SLC6A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
SLC6A4   10000 perm   2 sec   (6345 perm/sec)   p_kst 8.216000e-01   p_cons 6.920000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
KS ci ratio: 1.289472e-02	ci left: 8.167282e-01	ci right 8.273780e-01	k: 16442	n:20000
SLC6A4   20000 perm   4 sec   (5632 perm/sec)   p_kst 8.221000e-01   p_cons 7.075000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.141327e-02	ci left: 6.880553e-02	ci right 7.467774e-02	k: 2151	n:30000
KS ci ratio: 1.048396e-02	ci left: 8.189697e-01	ci right 8.276343e-01	k: 24700	n:30000
SLC6A4   30000 perm   6 sec   (5146 perm/sec)   p_kst 8.233333e-01   p_cons 7.170000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A4.2_1945_30000_0.82333_0.0717_1.png
                gene_name: SLC6A4
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SLC6A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
SLC6A7   10000 perm   2 sec   (6273 perm/sec)   p_kst 1.306000e-01   p_cons 6.370000e-01   p_joint 6.736000e-01

Joint ci ratio: 1.873948e-02	ci left: 6.798177e-01	ci right 6.927281e-01	k: 13726	n:20000
Cons ci ratio: 2.082185e-02	ci left: 6.325498e-01	ci right 6.459097e-01	k: 12785	n:20000
KS ci ratio: 7.043411e-02	ci left: 1.293566e-01	ci right 1.388501e-01	k: 2681	n:20000
SLC6A7   20000 perm   4 sec   (5530 perm/sec)   p_kst 1.340500e-01   p_cons 6.392500e-01   p_joint 6.863000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A7.2_1967_20000_0.13405_0.63925_0.6863.png
                gene_name: SLC6A7
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 97 percent done.
SLC7A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
KS ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
SLC7A2   10000 perm   2 sec   (6117 perm/sec)   p_kst 3.046000e-01   p_cons 2.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A2.2_2286_10000_0.3046_0.201_1.png
                gene_name: SLC7A2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
SLC7A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
Cons ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
KS ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
SLC7A6   10000 perm   2 sec   (5778 perm/sec)   p_kst 6.220000e-01   p_cons 8.810000e-02   p_joint 9.216000e-01

Joint ci ratio: 1.940191e-02	ci left: 6.645896e-01	ci right 6.776607e-01	k: 13423	n:20000
Cons ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
KS ci ratio: 2.159811e-02	ci left: 6.154382e-01	ci right 6.289262e-01	k: 12444	n:20000
SLC7A6   20000 perm   4 sec   (5052 perm/sec)   p_kst 6.222000e-01   p_cons 1.198500e-01   p_joint 6.711500e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A6.2_1584_20000_0.6222_0.11985_0.67115.png
                gene_name: SLC7A6
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000161
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 161 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1528>
Subject: Job 4422495: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1528>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000162> was used as the working directory.
Started at Wed Oct 24 18:08:44 2012
Results reported at Wed Oct 24 18:34:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000162.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000162.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 162  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000162.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1777.59 sec.
    Max Memory :      5373 MB
    Max Swap   :      7751 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
162
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 162
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 162: processing genes 14567 - 14656
Calculating significance of each gene.
Using projection method.
14567	SLC9A2	1
14568	SLC9A3	2.796902e-01
14569	SLC9A3R1	5.456042e-01
14570	SLC9A3R2	1
14571	SLC9A4	8.656120e-01
14572	SLC9A5	7.297097e-01
14573	SLC9A6	9.012597e-02
14574	SLC9A7	1
14575	SLC9A8	7.024819e-01
14576	SLC9A9	6.951736e-02
14577	SLCO1A2	3.790646e-01
14578	SLCO1B1	9.104407e-02
14579	SLCO1B3	1
14580	SLCO1C1	4.851660e-01
14581	SLCO2A1	7.839500e-01
14582	SLCO2B1	9.616958e-01
14583	SLCO3A1	7.487810e-01
14584	SLCO4A1	1
14585	SLCO4C1	1
14586	SLCO5A1	9.838025e-01
14587	SLCO6A1	3.297805e-03
14588	SLFN11	8.707992e-01
14589	SLFN12	3.951609e-01
14590	SLFN12L	5.108983e-01
14591	SLFN13	2.087529e-01
14592	SLFN5	5.206233e-01
14593	SLFNL1	1
14594	SLIT1	3.451655e-01
14595	SLIT2	9.766894e-01
14596	SLIT3	1
14597	SLITRK1	5.636494e-03
14598	SLITRK2	2.638870e-04
14599	SLITRK3	9.421708e-01
14600	SLITRK4	2.213854e-04
14601	SLITRK5	3.455264e-03
14602	SLITRK6	2.658339e-03
14603	SLK	8.363166e-01
14604	SLMAP	8.841369e-01
14605	SLMO1	1
14606	SLMO2	1
14607	SLN	1.221331e-01
14608	SLPI	5.188037e-01
14609	SLTM	8.474283e-01
14610	SLU7	9.690120e-01
14611	SLURP1	2.318391e-01
14612	SMAD1	4.454974e-01
14613	SMAD2	6.759824e-01
14614	SMAD3	9.205657e-01
14615	SMAD4	4.070153e-03
14616	SMAD5	7.596091e-01
14617	SMAD6	1
14618	SMAD7	1
14619	SMAD9	1
14620	SMAGP	1
14621	SMAP1	1
14622	SMAP2	5.615675e-01
14623	SMARCA1	9.896745e-01
14624	SMARCA2	7.736496e-01
14625	SMARCA4	3.360317e-03
14626	SMARCA5	9.977785e-01
14627	SMARCAD1	3.614133e-01
14628	SMARCAL1	8.681944e-01
14629	SMARCB1	7.576286e-01
14630	SMARCC1	9.960620e-01
14631	SMARCC2	8.750012e-01
14632	SMARCD1	6.047107e-01
14633	SMARCD2	9.045653e-01
14634	SMARCD3	8.639316e-01
14635	SMARCE1	8.570109e-01
14636	SMC1A	9.361311e-01
14637	SMC1B	6.748492e-01
14638	SMC2	6.744025e-01
14639	SMC3	6.128528e-01
14640	SMC4	6.825020e-01
14641	SMC5	9.939804e-01
14642	SMC6	4.560947e-01
14643	SMCHD1	9.998111e-01
14644	SMCP	4.897711e-01
14645	SMCR7	8.618973e-01
14646	SMCR7L	8.607088e-01
14647	SMCR8	9.414751e-01
14648	SMEK1	9.868784e-01
14649	SMEK2	8.588438e-01
14650	SMG1	1
14651	SMG5	1
14652	SMG6	9.999494e-01
14653	SMG7	9.012105e-01
14654	SMNDC1	5.836306e-01
14655	SMO	2.522817e-01
14656	SMOC1	5.014164e-02
Done

Running MutSig 2:
Scatter job 162: processing genes 14567 - 14656
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
Cons ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
KS ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
SLIT2   10000 perm   4 sec   (2779 perm/sec)   p_kst 6.222000e-01   p_cons 4.189000e-01   p_joint 7.939000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT2.28_4738_10000_0.6222_0.4189_0.7939.png
                gene_name: SLIT2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 2 percent done.
SLITRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
SLITRK2   10000 perm   3 sec   (3575 perm/sec)   p_kst 3.318000e-01   p_cons 6.369000e-01   p_joint 4.372000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK2.27_2542_10000_0.3318_0.6369_0.4372.png
                gene_name: SLITRK2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 3 percent done.
SLITRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
Cons ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
KS ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
SLITRK1   10000 perm   2 sec   (4342 perm/sec)   p_kst 4.236000e-01   p_cons 3.604000e-01   p_joint 4.976000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK1.23_2095_10000_0.4236_0.3604_0.4976.png
                gene_name: SLITRK1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 5 percent done.
SLITRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.884357e-03	ci left: 9.572282e-01	ci right 9.649002e-01	k: 9612	n:10000
Cons ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
KS ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
SLITRK4   10000 perm   2 sec   (4173 perm/sec)   p_kst 7.707000e-01   p_cons 9.797000e-01   p_joint 9.612000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK4.20_2518_10000_0.7707_0.9797_0.9612.png
                gene_name: SLITRK4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 6 percent done.
SLITRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
Cons ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
KS ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
SLITRK5   10000 perm   2 sec   (4140 perm/sec)   p_kst 8.944000e-01   p_cons 3.987000e-01   p_joint 7.896000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK5.20_2881_10000_0.8944_0.3987_0.7896.png
                gene_name: SLITRK5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 8 percent done.
SMARCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
Cons ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
KS ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
SMARCA4   10000 perm   3 sec   (3295 perm/sec)   p_kst 1.777000e-01   p_cons 6.711000e-01   p_joint 4.291000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA4.18_5189_10000_0.1777_0.6711_0.4291.png
                gene_name: SMARCA4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 9 percent done.
SLITRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.053554e-02	ci left: 9.276122e-01	ci right 9.375340e-01	k: 9327	n:10000
KS ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
SLITRK3   10000 perm   2 sec   (4069 perm/sec)   p_kst 6.852000e-01   p_cons 9.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLITRK3.17_2938_10000_0.6852_0.9327_1.png
                gene_name: SLITRK3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
SLIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
KS ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
SLIT1   10000 perm   3 sec   (3497 perm/sec)   p_kst 4.105000e-01   p_cons 9.020000e-02   p_joint 3.126000e-01

Joint ci ratio: 4.576875e-02	ci left: 2.621684e-01	ci right 2.744990e-01	k: 5366	n:20000
Cons ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
KS ci ratio: 3.329951e-02	ci left: 4.024242e-01	ci right 4.161022e-01	k: 8185	n:20000
SLIT1   20000 perm   6 sec   (3196 perm/sec)   p_kst 4.092500e-01   p_cons 9.310000e-02   p_joint 2.683000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT1.16_4753_20000_0.40925_0.0931_0.2683.png
                gene_name: SLIT1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 12 percent done.
SLIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
KS ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
SLIT3   10000 perm   3 sec   (3582 perm/sec)   p_kst 1.206000e-01   p_cons 2.834000e-01   p_joint 2.227000e-01

Joint ci ratio: 5.504969e-02	ci left: 1.966522e-01	ci right 2.078345e-01	k: 4044	n:20000
Cons ci ratio: 4.334467e-02	ci left: 2.839159e-01	ci right 2.965452e-01	k: 5804	n:20000
KS ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
SLIT3   20000 perm   6 sec   (3278 perm/sec)   p_kst 1.162500e-01   p_cons 2.902000e-01   p_joint 2.022000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT3.16_4716_20000_0.11625_0.2902_0.2022.png
                gene_name: SLIT3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 14 percent done.
SLCO1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
Cons ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
KS ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
SLCO1B1   10000 perm   2 sec   (4770 perm/sec)   p_kst 5.595000e-01   p_cons 8.817000e-01   p_joint 7.578000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1B1.14_2132_10000_0.5595_0.8817_0.7578.png
                gene_name: SLCO1B1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 15 percent done.
SLITRK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.119669e-02	ci left: 4.652708e-01	ci right 4.849437e-01	k: 4751	n:10000
Cons ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
SLITRK6   10000 perm   2 sec   (4177 perm/sec)   p_kst 3.032000e-01   p_cons 9.569000e-01   p_joint 4.751000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK6.14_2530_10000_0.3032_0.9569_0.4751.png
                gene_name: SLITRK6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 17 percent done.
SLC9A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
Cons ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
KS ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
SLC9A6   10000 perm   2 sec   (4541 perm/sec)   p_kst 2.837000e-01   p_cons 2.519000e-01   p_joint 2.714000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A6.12_2170_10000_0.2837_0.2519_0.2714.png
                gene_name: SLC9A6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 18 percent done.
SLC9A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
Cons ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
KS ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
SLC9A9   10000 perm   2 sec   (4922 perm/sec)   p_kst 3.848000e-01   p_cons 7.000000e-03   p_joint 2.780000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
KS ci ratio: 3.536102e-02	ci left: 3.738139e-01	ci right 3.873208e-01	k: 7611	n:20000
SLC9A9   20000 perm   5 sec   (4439 perm/sec)   p_kst 3.805500e-01   p_cons 7.250000e-03   p_joint 4.285000e-02

Joint ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
Cons ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
KS ci ratio: 2.815861e-02	ci left: 3.869019e-01	ci right 3.979856e-01	k: 11773	n:30000
SLC9A9   30000 perm   7 sec   (4241 perm/sec)   p_kst 3.924333e-01   p_cons 7.766667e-03   p_joint 4.670000e-02

Joint ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
Cons ci ratio: 2.192923e-01	ci left: 7.055794e-03	ci right 8.816768e-03	k: 316	n:40000
KS ci ratio: 2.437667e-02	ci left: 3.878348e-01	ci right 3.974307e-01	k: 15705	n:40000
SLC9A9   40000 perm   10 sec   (4107 perm/sec)   p_kst 3.926250e-01   p_cons 7.900000e-03   p_joint 4.100000e-02

Joint ci ratio: 9.148331e-02	ci left: 3.379731e-02	ci right 3.705692e-02	k: 1770	n:50000
Cons ci ratio: 1.957063e-01	ci left: 7.180741e-03	ci right 8.757189e-03	k: 397	n:50000
KS ci ratio: 2.176525e-02	ci left: 3.891743e-01	ci right 3.977580e-01	k: 19673	n:50000
SLC9A9   50000 perm   12 sec   (4014 perm/sec)   p_kst 3.934600e-01   p_cons 7.940000e-03   p_joint 3.540000e-02

Joint ci ratio: 1.006302e-01	ci left: 2.342402e-02	ci right 2.592225e-02	k: 1479	n:60000
Cons ci ratio: 1.797200e-01	ci left: 7.159405e-03	ci right 8.588814e-03	k: 471	n:60000
KS ci ratio: 1.989232e-02	ci left: 3.889890e-01	ci right 3.968213e-01	k: 23574	n:60000
SLC9A9   60000 perm   15 sec   (3923 perm/sec)   p_kst 3.929000e-01   p_cons 7.850000e-03   p_joint 2.465000e-02

Joint ci ratio: 8.383727e-02	ci left: 2.901455e-02	ci right 3.156743e-02	k: 2119	n:70000
Cons ci ratio: 1.688263e-01	ci left: 6.997352e-03	ci right 8.301101e-03	k: 534	n:70000
KS ci ratio: 1.856266e-02	ci left: 3.855286e-01	ci right 3.927663e-01	k: 27240	n:70000
SLC9A9   70000 perm   18 sec   (3850 perm/sec)   p_kst 3.891429e-01   p_cons 7.628571e-03   p_joint 3.027143e-02

Joint ci ratio: 7.847038e-02	ci left: 2.906170e-02	ci right 3.144753e-02	k: 2419	n:80000
Cons ci ratio: 1.605128e-01	ci left: 6.805777e-03	ci right 8.005362e-03	k: 591	n:80000
KS ci ratio: 1.738734e-02	ci left: 3.851203e-01	ci right 3.918878e-01	k: 31080	n:80000
SLC9A9   80000 perm   21 sec   (3776 perm/sec)   p_kst 3.885000e-01   p_cons 7.387500e-03   p_joint 3.023750e-02

Joint ci ratio: 7.775204e-02	ci left: 2.639768e-02	ci right 2.854403e-02	k: 2471	n:90000
Cons ci ratio: 1.472662e-01	ci left: 7.235610e-03	ci right 8.396451e-03	k: 702	n:90000
KS ci ratio: 1.641985e-02	ci left: 3.845371e-01	ci right 3.909145e-01	k: 34895	n:90000
SLC9A9   90000 perm   24 sec   (3710 perm/sec)   p_kst 3.877222e-01   p_cons 7.800000e-03   p_joint 2.745556e-02

Joint ci ratio: 6.029757e-02	ci left: 3.932597e-02	ci right 4.178077e-02	k: 4054	n:100000
Cons ci ratio: 1.247327e-01	ci left: 9.169626e-03	ci right 1.039906e-02	k: 977	n:100000
KS ci ratio: 1.561514e-02	ci left: 3.835501e-01	ci right 3.895964e-01	k: 38657	n:100000
SLC9A9   100000 perm   27 sec   (3647 perm/sec)   p_kst 3.865700e-01   p_cons 9.770000e-03   p_joint 4.054000e-02

Joint ci ratio: 5.726773e-02	ci left: 3.968335e-02	ci right 4.203185e-02	k: 4493	n:110000
Cons ci ratio: 1.189727e-01	ci left: 9.190976e-03	ci right 1.036236e-02	k: 1074	n:110000
KS ci ratio: 1.489667e-02	ci left: 3.834302e-01	ci right 3.891940e-01	k: 42494	n:110000
SLC9A9   110000 perm   31 sec   (3590 perm/sec)   p_kst 3.863091e-01   p_cons 9.763636e-03   p_joint 4.084545e-02

Joint ci ratio: 5.876220e-02	ci left: 3.470658e-02	ci right 3.681593e-02	k: 4290	n:120000
Cons ci ratio: 1.136013e-01	ci left: 9.266546e-03	ci right 1.039067e-02	k: 1178	n:120000
KS ci ratio: 1.427080e-02	ci left: 3.832775e-01	ci right 3.887947e-01	k: 46324	n:120000
SLC9A9   120000 perm   34 sec   (3533 perm/sec)   p_kst 3.860333e-01   p_cons 9.816667e-03   p_joint 3.575000e-02

Joint ci ratio: 5.345516e-02	ci left: 3.866023e-02	ci right 4.079113e-02	k: 5163	n:130000
Cons ci ratio: 1.092852e-01	ci left: 9.264137e-03	ci right 1.034251e-02	k: 1273	n:130000
KS ci ratio: 1.371326e-02	ci left: 3.833062e-01	ci right 3.886065e-01	k: 50174	n:130000
SLC9A9   130000 perm   37 sec   (3480 perm/sec)   p_kst 3.859538e-01   p_cons 9.792308e-03   p_joint 3.971538e-02

Joint ci ratio: 5.024554e-02	ci left: 4.061645e-02	ci right 4.271687e-02	k: 5832	n:140000
Cons ci ratio: 1.054263e-01	ci left: 9.262765e-03	ci right 1.030055e-02	k: 1368	n:140000
KS ci ratio: 1.320479e-02	ci left: 3.837483e-01	ci right 3.888564e-01	k: 54082	n:140000
SLC9A9   140000 perm   41 sec   (3426 perm/sec)   p_kst 3.863000e-01   p_cons 9.771429e-03   p_joint 4.165714e-02

Joint ci ratio: 4.852821e-02	ci left: 4.067414e-02	ci right 4.270363e-02	k: 6252	n:150000
Cons ci ratio: 1.022672e-01	ci left: 9.203675e-03	ci right 1.020208e-02	k: 1454	n:150000
KS ci ratio: 1.273591e-02	ci left: 3.846206e-01	ci right 3.895571e-01	k: 58063	n:150000
SLC9A9   150000 perm   44 sec   (3375 perm/sec)   p_kst 3.870867e-01   p_cons 9.693333e-03   p_joint 4.168000e-02

Joint ci ratio: 4.634162e-02	ci left: 4.181340e-02	ci right 4.380321e-02	k: 6848	n:160000
Cons ci ratio: 9.863551e-02	ci left: 9.292603e-03	ci right 1.026278e-02	k: 1563	n:160000
KS ci ratio: 1.232954e-02	ci left: 3.847747e-01	ci right 3.895544e-01	k: 61946	n:160000
SLC9A9   160000 perm   48 sec   (3327 perm/sec)   p_kst 3.871625e-01   p_cons 9.768750e-03   p_joint 4.280000e-02

Outputting figure to mutsig2_images.part000000000162/SLC9A9.11_2002_160000_0.38716_0.0097687_0.0428.png
                gene_name: SLC9A9
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0098 
      ci_cons_bounds_left: 0.0093 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 20 percent done.
SLCO6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
Cons ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
KS ci ratio: 1.087517e-02	ci left: 9.233773e-01	ci right 9.335714e-01	k: 9286	n:10000
SLCO6A1   10000 perm   2 sec   (4700 perm/sec)   p_kst 9.286000e-01   p_cons 6.950000e-02   p_joint 3.048000e-01

Joint ci ratio: 4.978237e-02	ci left: 2.307236e-01	ci right 2.425531e-01	k: 4732	n:20000
Cons ci ratio: 9.533036e-02	ci left: 7.422213e-02	ci right 8.170111e-02	k: 1558	n:20000
KS ci ratio: 8.019036e-03	ci left: 9.190141e-01	ci right 9.264624e-01	k: 18456	n:20000
SLCO6A1   20000 perm   5 sec   (4237 perm/sec)   p_kst 9.228000e-01   p_cons 7.790000e-02   p_joint 2.366000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO6A1.11_2212_20000_0.9228_0.0779_0.2366.png
                gene_name: SLCO6A1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 21 percent done.
SMARCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
KS ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
SMARCA2   10000 perm   2 sec   (4121 perm/sec)   p_kst 2.817000e-01   p_cons 7.405000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA2.10_4905_10000_0.2817_0.7405_0.445.png
                gene_name: SMARCA2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 23 percent done.
SMG1
Processing conservation and coverage...
88% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 7.842084e-03	ci left: 9.576469e-01	ci right 9.652813e-01	k: 9616	n:10000
KS ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
SMG1   10000 perm   4 sec   (2623 perm/sec)   p_kst 2.200000e-01   p_cons 9.616000e-01   p_joint 4.405000e-01

Outputting figure to mutsig2_images.part000000000162/SMG1.10_11238_10000_0.22_0.9616_0.4405.png
                gene_name: SMG1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 24 percent done.
SLCO5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
Cons ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
KS ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
SLCO5A1   10000 perm   2 sec   (4836 perm/sec)   p_kst 5.797000e-01   p_cons 8.446000e-01   p_joint 8.029000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO5A1.9_2583_10000_0.5797_0.8446_0.8029.png
                gene_name: SLCO5A1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 26 percent done.
SMARCAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
Cons ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
KS ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
SMARCAD1   10000 perm   2 sec   (4588 perm/sec)   p_kst 4.898000e-01   p_cons 6.354000e-01   p_joint 7.321000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCAD1.9_3179_10000_0.4898_0.6354_0.7321.png
                gene_name: SMARCAD1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 27 percent done.
SMARCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
SMARCC2   10000 perm   2 sec   (4330 perm/sec)   p_kst 4.435000e-01   p_cons 8.800000e-03   p_joint 3.500000e-02

Joint ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
Cons ci ratio: 2.771931e-01	ci left: 8.527942e-03	ci right 1.131731e-02	k: 197	n:20000
KS ci ratio: 3.109419e-02	ci left: 4.358498e-01	ci right 4.496669e-01	k: 8855	n:20000
SMARCC2   20000 perm   5 sec   (3938 perm/sec)   p_kst 4.427500e-01   p_cons 9.850000e-03   p_joint 7.120000e-02

Joint ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
Cons ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
KS ci ratio: 2.546377e-02	ci left: 4.356704e-01	ci right 4.469409e-01	k: 13239	n:30000
SMARCC2   30000 perm   8 sec   (3804 perm/sec)   p_kst 4.413000e-01   p_cons 9.733333e-03   p_joint 4.350000e-02

Joint ci ratio: 1.007360e-01	ci left: 3.463466e-02	ci right 3.833302e-02	k: 1458	n:40000
Cons ci ratio: 1.965093e-01	ci left: 8.881628e-03	ci right 1.084051e-02	k: 393	n:40000
KS ci ratio: 2.200124e-02	ci left: 4.375745e-01	ci right 4.473339e-01	k: 17698	n:40000
SMARCC2   40000 perm   11 sec   (3702 perm/sec)   p_kst 4.424500e-01   p_cons 9.825000e-03   p_joint 3.645000e-02

Joint ci ratio: 8.852019e-02	ci left: 3.606695e-02	ci right 3.942699e-02	k: 1886	n:50000
Cons ci ratio: 1.753149e-01	ci left: 9.031614e-03	ci right 1.078599e-02	k: 494	n:50000
KS ci ratio: 1.964560e-02	ci left: 4.389191e-01	ci right 4.476475e-01	k: 22164	n:50000
SMARCC2   50000 perm   14 sec   (3624 perm/sec)   p_kst 4.432800e-01   p_cons 9.880000e-03   p_joint 3.772000e-02

Joint ci ratio: 8.811251e-02	ci left: 3.052452e-02	ci right 3.335433e-02	k: 1915	n:60000
Cons ci ratio: 1.659240e-01	ci left: 8.451539e-03	ci right 9.996492e-03	k: 552	n:60000
KS ci ratio: 1.792843e-02	ci left: 4.394527e-01	ci right 4.474194e-01	k: 26606	n:60000
SMARCC2   60000 perm   17 sec   (3557 perm/sec)   p_kst 4.434333e-01   p_cons 9.200000e-03   p_joint 3.191667e-02

Joint ci ratio: 8.702109e-02	ci left: 2.694415e-02	ci right 2.940945e-02	k: 1971	n:70000
Cons ci ratio: 1.512862e-01	ci left: 8.780895e-03	ci right 1.023163e-02	k: 664	n:70000
KS ci ratio: 1.657234e-02	ci left: 4.405287e-01	ci right 4.479045e-01	k: 31095	n:70000
SMARCC2   70000 perm   20 sec   (3497 perm/sec)   p_kst 4.442143e-01   p_cons 9.485714e-03   p_joint 2.815714e-02

Joint ci ratio: 7.732461e-02	ci left: 2.992016e-02	ci right 3.233900e-02	k: 2489	n:80000
Cons ci ratio: 1.409548e-01	ci left: 8.899705e-03	ci right 1.026122e-02	k: 765	n:80000
KS ci ratio: 1.552096e-02	ci left: 4.401657e-01	ci right 4.470634e-01	k: 35489	n:80000
SMARCC2   80000 perm   23 sec   (3441 perm/sec)   p_kst 4.436125e-01   p_cons 9.562500e-03   p_joint 3.111250e-02

Joint ci ratio: 7.452778e-02	ci left: 2.870965e-02	ci right 3.094301e-02	k: 2683	n:90000
Cons ci ratio: 1.329520e-01	ci left: 8.930267e-03	ci right 1.021275e-02	k: 860	n:90000
KS ci ratio: 1.460870e-02	ci left: 4.411943e-01	ci right 4.476981e-01	k: 40000	n:90000
SMARCC2   90000 perm   27 sec   (3382 perm/sec)   p_kst 4.444444e-01   p_cons 9.555556e-03   p_joint 2.981111e-02

Joint ci ratio: 6.923597e-02	ci left: 2.998357e-02	ci right 3.214375e-02	k: 3105	n:100000
Cons ci ratio: 1.266427e-01	ci left: 8.888663e-03	ci right 1.010004e-02	k: 948	n:100000
KS ci ratio: 1.385581e-02	ci left: 4.414768e-01	ci right 4.476464e-01	k: 44456	n:100000
SMARCC2   100000 perm   30 sec   (3314 perm/sec)   p_kst 4.445600e-01   p_cons 9.480000e-03   p_joint 3.105000e-02

Joint ci ratio: 6.682157e-02	ci left: 2.932172e-02	ci right 3.135768e-02	k: 3336	n:110000
Cons ci ratio: 1.193658e-01	ci left: 9.129220e-03	ci right 1.029685e-02	k: 1067	n:110000
KS ci ratio: 1.321360e-02	ci left: 4.415241e-01	ci right 4.474061e-01	k: 48891	n:110000
SMARCC2   110000 perm   34 sec   (3253 perm/sec)   p_kst 4.444636e-01   p_cons 9.700000e-03   p_joint 3.032727e-02

Joint ci ratio: 5.705349e-02	ci left: 3.676907e-02	ci right 3.893667e-02	k: 4541	n:120000
Cons ci ratio: 1.146369e-01	ci left: 9.096497e-03	ci right 1.021073e-02	k: 1157	n:120000
KS ci ratio: 1.266616e-02	ci left: 4.410611e-01	ci right 4.466916e-01	k: 53265	n:120000
SMARCC2   120000 perm   38 sec   (3199 perm/sec)   p_kst 4.438750e-01   p_cons 9.641667e-03   p_joint 3.784167e-02

Joint ci ratio: 6.110617e-02	ci left: 2.974617e-02	ci right 3.162868e-02	k: 3988	n:130000
Cons ci ratio: 1.101174e-01	ci left: 9.121957e-03	ci right 1.019239e-02	k: 1254	n:130000
KS ci ratio: 1.218250e-02	ci left: 4.406354e-01	ci right 4.460440e-01	k: 57634	n:130000
SMARCC2   130000 perm   41 sec   (3146 perm/sec)   p_kst 4.433385e-01   p_cons 9.646154e-03   p_joint 3.067692e-02

Joint ci ratio: 5.558375e-02	ci left: 3.335273e-02	ci right 3.526662e-02	k: 4802	n:140000
Cons ci ratio: 1.050780e-01	ci left: 9.325374e-03	ci right 1.036651e-02	k: 1377	n:140000
KS ci ratio: 1.173892e-02	ci left: 4.407525e-01	ci right 4.459641e-01	k: 62070	n:140000
SMARCC2   140000 perm   45 sec   (3101 perm/sec)   p_kst 4.433571e-01   p_cons 9.835714e-03   p_joint 3.430000e-02

Joint ci ratio: 5.192803e-02	ci left: 3.564878e-02	ci right 3.755585e-02	k: 5489	n:150000
Cons ci ratio: 1.018791e-01	ci left: 9.275153e-03	ci right 1.027727e-02	k: 1465	n:150000
KS ci ratio: 1.133745e-02	ci left: 4.409903e-01	ci right 4.460252e-01	k: 66526	n:150000
SMARCC2   150000 perm   49 sec   (3055 perm/sec)   p_kst 4.435067e-01   p_cons 9.766667e-03   p_joint 3.659333e-02

Joint ci ratio: 4.903653e-02	ci left: 3.746368e-02	ci right 3.935309e-02	k: 6144	n:160000
Cons ci ratio: 9.885917e-02	ci left: 9.249924e-03	ci right 1.021797e-02	k: 1556	n:160000
KS ci ratio: 1.097065e-02	ci left: 4.413760e-01	ci right 4.462511e-01	k: 71010	n:160000
SMARCC2   160000 perm   53 sec   (3011 perm/sec)   p_kst 4.438125e-01   p_cons 9.725000e-03   p_joint 3.840000e-02

Outputting figure to mutsig2_images.part000000000162/SMARCC2.9_3854_160000_0.44381_0.009725_0.0384.png
                gene_name: SMARCC2
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 29 percent done.
SMCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
SMCHD1   10000 perm   3 sec   (3551 perm/sec)   p_kst 7.195000e-01   p_cons 1.538000e-01   p_joint 3.759000e-01

Outputting figure to mutsig2_images.part000000000162/SMCHD1.9_6210_10000_0.7195_0.1538_0.3759.png
                gene_name: SMCHD1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 30 percent done.
SLC9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
Cons ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
SLC9A2   10000 perm   2 sec   (4989 perm/sec)   p_kst 1.074000e-01   p_cons 7.300000e-03   p_joint 3.400000e-02

Joint ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
Cons ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
KS ci ratio: 7.898397e-02	ci left: 1.053025e-01	ci right 1.140113e-01	k: 2192	n:20000
SLC9A2   20000 perm   5 sec   (4418 perm/sec)   p_kst 1.096000e-01   p_cons 6.250000e-03   p_joint 1.785000e-02

Joint ci ratio: 2.263290e-01	ci left: 8.779206e-03	ci right 1.105055e-02	k: 296	n:30000
Cons ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
KS ci ratio: 6.476173e-02	ci left: 1.052977e-01	ci right 1.123782e-01	k: 3264	n:30000
SLC9A2   30000 perm   7 sec   (4201 perm/sec)   p_kst 1.088000e-01   p_cons 5.400000e-03   p_joint 9.866667e-03

Joint ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
Cons ci ratio: 2.549572e-01	ci left: 5.126208e-03	ci right 6.646872e-03	k: 234	n:40000
KS ci ratio: 5.710131e-02	ci left: 1.023823e-01	ci right 1.084251e-01	k: 4215	n:40000
SLC9A2   40000 perm   10 sec   (4070 perm/sec)   p_kst 1.053750e-01   p_cons 5.850000e-03   p_joint 2.092500e-02

Joint ci ratio: 1.116505e-01	ci left: 2.271509e-02	ci right 2.542056e-02	k: 1202	n:50000
Cons ci ratio: 2.241407e-01	ci left: 5.398537e-03	ci right 6.779752e-03	k: 303	n:50000
KS ci ratio: 5.121985e-02	ci left: 1.021678e-01	ci right 1.075582e-01	k: 5242	n:50000
SLC9A2   50000 perm   13 sec   (3955 perm/sec)   p_kst 1.048400e-01   p_cons 6.060000e-03   p_joint 2.404000e-02

Joint ci ratio: 1.387231e-01	ci left: 1.222157e-02	ci right 1.405930e-02	k: 787	n:60000
Cons ci ratio: 2.054065e-01	ci left: 5.413539e-03	ci right 6.668296e-03	k: 361	n:60000
KS ci ratio: 4.741053e-02	ci left: 9.985316e-02	ci right 1.047187e-01	k: 6136	n:60000
SLC9A2   60000 perm   16 sec   (3866 perm/sec)   p_kst 1.022667e-01   p_cons 6.016667e-03   p_joint 1.311667e-02

Joint ci ratio: 1.336351e-01	ci left: 1.133082e-02	ci right 1.296713e-02	k: 849	n:70000
Cons ci ratio: 1.882362e-01	ci left: 5.577438e-03	ci right 6.749779e-03	k: 430	n:70000
KS ci ratio: 4.382835e-02	ci left: 1.003049e-01	ci right 1.048138e-01	k: 7178	n:70000
SLC9A2   70000 perm   19 sec   (3782 perm/sec)   p_kst 1.025429e-01   p_cons 6.142857e-03   p_joint 1.212857e-02

Joint ci ratio: 1.169459e-01	ci left: 1.303944e-02	ci right 1.467110e-02	k: 1107	n:80000
Cons ci ratio: 1.706832e-01	ci left: 5.990754e-03	ci right 7.120478e-03	k: 523	n:80000
KS ci ratio: 4.089384e-02	ci left: 1.009143e-01	ci right 1.051396e-01	k: 8241	n:80000
SLC9A2   80000 perm   22 sec   (3710 perm/sec)   p_kst 1.030125e-01   p_cons 6.537500e-03   p_joint 1.383750e-02

Joint ci ratio: 8.812701e-02	ci left: 2.056229e-02	ci right 2.246873e-02	k: 1935	n:90000
Cons ci ratio: 1.719046e-01	ci left: 5.250496e-03	ci right 6.248432e-03	k: 516	n:90000
KS ci ratio: 3.859978e-02	ci left: 1.008231e-01	ci right 1.048025e-01	k: 9252	n:90000
SLC9A2   90000 perm   25 sec   (3645 perm/sec)   p_kst 1.028000e-01   p_cons 5.733333e-03   p_joint 2.150000e-02

Joint ci ratio: 8.633304e-02	ci left: 1.932720e-02	ci right 2.108079e-02	k: 2019	n:100000
Cons ci ratio: 1.631466e-01	ci left: 5.271564e-03	ci right 6.217450e-03	k: 573	n:100000
KS ci ratio: 3.660135e-02	ci left: 1.010135e-01	ci right 1.047896e-01	k: 10289	n:100000
SLC9A2   100000 perm   28 sec   (3584 perm/sec)   p_kst 1.028900e-01   p_cons 5.730000e-03   p_joint 2.019000e-02

Joint ci ratio: 9.425159e-02	ci left: 1.475161e-02	ci right 1.621956e-02	k: 1702	n:110000
Cons ci ratio: 1.361299e-01	ci left: 6.972266e-03	ci right 7.999412e-03	k: 822	n:110000
KS ci ratio: 3.491523e-02	ci left: 1.010112e-01	ci right 1.046097e-01	k: 11308	n:110000
SLC9A2   110000 perm   31 sec   (3525 perm/sec)   p_kst 1.028000e-01   p_cons 7.472727e-03   p_joint 1.547273e-02

Joint ci ratio: 9.264442e-02	ci left: 1.401851e-02	ci right 1.538842e-02	k: 1763	n:120000
Cons ci ratio: 1.308360e-01	ci left: 6.938983e-03	ci right 7.918381e-03	k: 890	n:120000
KS ci ratio: 3.343195e-02	ci left: 1.010706e-01	ci right 1.045153e-01	k: 12334	n:120000
SLC9A2   120000 perm   35 sec   (3471 perm/sec)   p_kst 1.027833e-01   p_cons 7.416667e-03   p_joint 1.469167e-02

Joint ci ratio: 7.289376e-02	ci left: 2.096769e-02	ci right 2.256143e-02	k: 2828	n:130000
Cons ci ratio: 1.270528e-01	ci left: 6.807171e-03	ci right 7.738087e-03	k: 944	n:130000
KS ci ratio: 3.120289e-02	ci left: 1.065698e-01	ci right 1.099554e-01	k: 14073	n:130000
SLC9A2   130000 perm   38 sec   (3416 perm/sec)   p_kst 1.082538e-01   p_cons 7.261538e-03   p_joint 2.175385e-02

Joint ci ratio: 7.209795e-02	ci left: 1.993249e-02	ci right 2.143031e-02	k: 2894	n:140000
Cons ci ratio: 1.224125e-01	ci left: 6.826110e-03	ci right 7.723051e-03	k: 1017	n:140000
KS ci ratio: 3.013436e-02	ci left: 1.062084e-01	ci right 1.094650e-01	k: 15096	n:140000
SLC9A2   140000 perm   42 sec   (3364 perm/sec)   p_kst 1.078286e-01   p_cons 7.264286e-03   p_joint 2.067143e-02

Joint ci ratio: 6.362680e-02	ci left: 2.389416e-02	ci right 2.547095e-02	k: 3701	n:150000
Cons ci ratio: 1.181916e-01	ci left: 6.849530e-03	ci right 7.716346e-03	k: 1091	n:150000
KS ci ratio: 2.916753e-02	ci left: 1.059036e-01	ci right 1.090449e-01	k: 16120	n:150000
SLC9A2   150000 perm   45 sec   (3316 perm/sec)   p_kst 1.074667e-01   p_cons 7.273333e-03   p_joint 2.467333e-02

Joint ci ratio: 6.330177e-02	ci left: 2.266480e-02	ci right 2.415254e-02	k: 3744	n:160000
Cons ci ratio: 1.138396e-01	ci left: 6.937288e-03	ci right 7.780711e-03	k: 1176	n:160000
KS ci ratio: 2.822271e-02	ci left: 1.060794e-01	ci right 1.091223e-01	k: 17215	n:160000
SLC9A2   160000 perm   49 sec   (3268 perm/sec)   p_kst 1.075938e-01   p_cons 7.350000e-03   p_joint 2.340000e-02

Joint ci ratio: 6.659157e-02	ci left: 1.931082e-02	ci right 2.064680e-02	k: 3395	n:170000
Cons ci ratio: 1.101553e-01	ci left: 6.986629e-03	ci right 7.806776e-03	k: 1256	n:170000
KS ci ratio: 2.738341e-02	ci left: 1.061015e-01	ci right 1.090531e-01	k: 18287	n:170000
SLC9A2   170000 perm   53 sec   (3221 perm/sec)   p_kst 1.075706e-01   p_cons 7.388235e-03   p_joint 1.997059e-02

Joint ci ratio: 6.168338e-02	ci left: 2.126711e-02	ci right 2.262613e-02	k: 3949	n:180000
Cons ci ratio: 1.066065e-01	ci left: 7.057919e-03	ci right 7.858067e-03	k: 1341	n:180000
KS ci ratio: 2.659017e-02	ci left: 1.062991e-01	ci right 1.091691e-01	k: 19391	n:180000
SLC9A2   180000 perm   57 sec   (3177 perm/sec)   p_kst 1.077278e-01   p_cons 7.450000e-03   p_joint 2.193889e-02

Joint ci ratio: 6.179973e-02	ci left: 2.009559e-02	ci right 2.138225e-02	k: 3939	n:190000
Cons ci ratio: 1.038206e-01	ci left: 7.060550e-03	ci right 7.838802e-03	k: 1414	n:190000
KS ci ratio: 2.588476e-02	ci left: 1.063095e-01	ci right 1.091025e-01	k: 20463	n:190000
SLC9A2   190000 perm   61 sec   (3132 perm/sec)   p_kst 1.077000e-01   p_cons 7.442105e-03   p_joint 2.073158e-02

Joint ci ratio: 5.909106e-02	ci left: 2.089341e-02	ci right 2.217051e-02	k: 4305	n:200000
Cons ci ratio: 1.012766e-01	ci left: 7.058289e-03	ci right 7.816093e-03	k: 1486	n:200000
KS ci ratio: 2.522938e-02	ci left: 1.063446e-01	ci right 1.090668e-01	k: 21540	n:200000
SLC9A2   200000 perm   65 sec   (3086 perm/sec)   p_kst 1.077000e-01   p_cons 7.430000e-03   p_joint 2.152500e-02

Joint ci ratio: 5.583467e-02	ci left: 2.229262e-02	ci right 2.357774e-02	k: 4815	n:210000
Cons ci ratio: 9.865615e-02	ci left: 7.093614e-03	ci right 7.834364e-03	k: 1566	n:210000
KS ci ratio: 2.463542e-02	ci left: 1.062682e-01	ci right 1.089236e-01	k: 22594	n:210000
SLC9A2   210000 perm   69 sec   (3046 perm/sec)   p_kst 1.075905e-01   p_cons 7.457143e-03   p_joint 2.292857e-02

Outputting figure to mutsig2_images.part000000000162/SLC9A2.8_2487_210000_0.10759_0.0074571_0.022929.png
                gene_name: SLC9A2
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 32 percent done.
SLC9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
SLC9A4   10000 perm   2 sec   (4837 perm/sec)   p_kst 4.110000e-02   p_cons 4.701000e-01   p_joint 7.070000e-02

Joint ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
Cons ci ratio: 2.929096e-02	ci left: 4.654605e-01	ci right 4.793475e-01	k: 9448	n:20000
KS ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
SLC9A4   20000 perm   5 sec   (4270 perm/sec)   p_kst 4.120000e-02   p_cons 4.724000e-01   p_joint 6.165000e-02

Joint ci ratio: 7.597667e-02	ci left: 7.839518e-02	ci right 8.461949e-02	k: 2444	n:30000
Cons ci ratio: 2.292712e-02	ci left: 4.878267e-01	ci right 4.991745e-01	k: 14805	n:30000
KS ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
SLC9A4   30000 perm   7 sec   (4067 perm/sec)   p_kst 4.106667e-02   p_cons 4.935000e-01   p_joint 8.146667e-02

Joint ci ratio: 7.292150e-02	ci left: 6.491287e-02	ci right 6.985016e-02	k: 2694	n:40000
Cons ci ratio: 1.980416e-02	ci left: 4.898884e-01	ci right 4.997124e-01	k: 19792	n:40000
KS ci ratio: 9.437205e-02	ci left: 3.939530e-02	ci right 4.332164e-02	k: 1653	n:40000
SLC9A4   40000 perm   10 sec   (3947 perm/sec)   p_kst 4.132500e-02   p_cons 4.948000e-01   p_joint 6.735000e-02

Outputting figure to mutsig2_images.part000000000162/SLC9A4.8_2445_40000_0.041325_0.4948_0.06735.png
                gene_name: SLC9A4
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 33 percent done.
SLCO2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085144e-02	ci left: 4.694658e-01	ci right 4.891463e-01	k: 4793	n:10000
Cons ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
KS ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
SLCO2B1   10000 perm   2 sec   (4580 perm/sec)   p_kst 4.192000e-01   p_cons 2.557000e-01   p_joint 4.793000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO2B1.8_2186_10000_0.4192_0.2557_0.4793.png
                gene_name: SLCO2B1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
SMAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
Cons ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
KS ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
SMAD4   10000 perm   2 sec   (4949 perm/sec)   p_kst 6.253000e-01   p_cons 1.889000e-01   p_joint 3.987000e-01

Outputting figure to mutsig2_images.part000000000162/SMAD4.8_1703_10000_0.6253_0.1889_0.3987.png
                gene_name: SMAD4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 36 percent done.
SLCO1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
Cons ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
KS ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
SLCO1A2   10000 perm   2 sec   (5330 perm/sec)   p_kst 7.186000e-01   p_cons 4.864000e-01   p_joint 8.869000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1A2.7_2069_10000_0.7186_0.4864_0.8869.png
                gene_name: SLCO1A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 38 percent done.
SLCO1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
KS ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
SLCO1C1   10000 perm   2 sec   (4996 perm/sec)   p_kst 3.180000e-02   p_cons 4.868000e-01   p_joint 7.780000e-02

Joint ci ratio: 7.894354e-02	ci left: 1.054008e-01	ci right 1.141130e-01	k: 2194	n:20000
Cons ci ratio: 2.870694e-02	ci left: 4.755027e-01	ci right 4.894024e-01	k: 9649	n:20000
KS ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
SLCO1C1   20000 perm   5 sec   (4398 perm/sec)   p_kst 3.050000e-02   p_cons 4.824500e-01   p_joint 1.097000e-01

Joint ci ratio: 8.445447e-02	ci left: 6.416347e-02	ci right 6.985406e-02	k: 2009	n:30000
Cons ci ratio: 2.355660e-02	ci left: 4.742988e-01	ci right 4.856384e-01	k: 14399	n:30000
KS ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
SLCO1C1   30000 perm   7 sec   (4191 perm/sec)   p_kst 3.133333e-02   p_cons 4.799667e-01   p_joint 6.696667e-02

Joint ci ratio: 6.852404e-02	ci left: 7.302772e-02	ci right 7.823408e-02	k: 3024	n:40000
Cons ci ratio: 2.071163e-02	ci left: 4.675222e-01	ci right 4.773318e-01	k: 18897	n:40000
KS ci ratio: 1.081045e-01	ci left: 3.010201e-02	ci right 3.356640e-02	k: 1272	n:40000
SLCO1C1   40000 perm   10 sec   (4051 perm/sec)   p_kst 3.180000e-02   p_cons 4.724250e-01   p_joint 7.560000e-02

Joint ci ratio: 7.251275e-02	ci left: 5.321415e-02	ci right 5.723768e-02	k: 2760	n:50000
Cons ci ratio: 1.849790e-02	ci left: 4.687754e-01	ci right 4.775477e-01	k: 23658	n:50000
KS ci ratio: 9.570998e-02	ci left: 3.090430e-02	ci right 3.403029e-02	k: 1622	n:50000
SLCO1C1   50000 perm   13 sec   (3945 perm/sec)   p_kst 3.244000e-02   p_cons 4.731600e-01   p_joint 5.520000e-02

Outputting figure to mutsig2_images.part000000000162/SLCO1C1.7_2298_50000_0.03244_0.47316_0.0552.png
                gene_name: SLCO1C1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 39 percent done.
SLFN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
KS ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
SLFN11   10000 perm   2 sec   (4836 perm/sec)   p_kst 7.678000e-01   p_cons 4.456000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLFN11.7_2722_10000_0.7678_0.4456_1.png
                gene_name: SLFN11
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
SLFN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
SLFN13   10000 perm   2 sec   (4661 perm/sec)   p_kst 9.292000e-01   p_cons 3.740000e-02   p_joint 1.461000e-01

Joint ci ratio: 7.277074e-02	ci left: 1.220703e-01	ci right 1.313386e-01	k: 2533	n:20000
Cons ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
KS ci ratio: 7.676410e-03	ci left: 9.251483e-01	ci right 9.323264e-01	k: 18576	n:20000
SLFN13   20000 perm   5 sec   (4115 perm/sec)   p_kst 9.288000e-01   p_cons 3.975000e-02   p_joint 1.266500e-01

Joint ci ratio: 3.887496e-02	ci left: 2.481874e-01	ci right 2.580604e-01	k: 7593	n:30000
Cons ci ratio: 1.173954e-01	ci left: 3.372600e-02	ci right 3.796450e-02	k: 1074	n:30000
KS ci ratio: 6.559273e-03	ci left: 9.194505e-01	ci right 9.255341e-01	k: 27676	n:30000
SLFN13   30000 perm   8 sec   (3881 perm/sec)   p_kst 9.225333e-01   p_cons 3.580000e-02   p_joint 2.531000e-01

Joint ci ratio: 4.688702e-02	ci left: 1.452511e-01	ci right 1.522499e-01	k: 5949	n:40000
Cons ci ratio: 1.005217e-01	ci left: 3.478102e-02	ci right 3.848664e-02	k: 1464	n:40000
KS ci ratio: 5.658740e-03	ci left: 9.204203e-01	ci right 9.256681e-01	k: 36923	n:40000
SLFN13   40000 perm   11 sec   (3761 perm/sec)   p_kst 9.230750e-01   p_cons 3.660000e-02   p_joint 1.487250e-01

Joint ci ratio: 4.442837e-02	ci left: 1.317188e-01	ci right 1.377237e-01	k: 6735	n:50000
Cons ci ratio: 8.968739e-02	ci left: 3.514714e-02	ci right 3.846692e-02	k: 1839	n:50000
KS ci ratio: 5.035340e-03	ci left: 9.214397e-01	ci right 9.261109e-01	k: 46190	n:50000
SLFN13   50000 perm   14 sec   (3668 perm/sec)   p_kst 9.238000e-01   p_cons 3.678000e-02   p_joint 1.347000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN13.7_2710_50000_0.9238_0.03678_0.1347.png
                gene_name: SLFN13
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
SMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
SMC4   10000 perm   2 sec   (4405 perm/sec)   p_kst 1.008000e-01   p_cons 2.710000e-02   p_joint 5.400000e-02

Joint ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
Cons ci ratio: 1.652953e-01	ci left: 2.508551e-02	ci right 2.965329e-02	k: 546	n:20000
KS ci ratio: 8.151112e-02	ci left: 9.940942e-02	ci right 1.079062e-01	k: 2072	n:20000
SMC4   20000 perm   5 sec   (3963 perm/sec)   p_kst 1.036000e-01   p_cons 2.730000e-02   p_joint 1.460000e-02

Joint ci ratio: 1.402838e-01	ci left: 2.358463e-02	ci right 2.717476e-02	k: 760	n:30000
Cons ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
KS ci ratio: 6.769511e-02	ci left: 9.711984e-02	ci right 1.039577e-01	k: 3015	n:30000
SMC4   30000 perm   8 sec   (3802 perm/sec)   p_kst 1.005000e-01   p_cons 2.776667e-02   p_joint 2.533333e-02

Joint ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
Cons ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
KS ci ratio: 5.860428e-02	ci left: 9.764412e-02	ci right 1.035640e-01	k: 4023	n:40000
SMC4   40000 perm   11 sec   (3670 perm/sec)   p_kst 1.005750e-01   p_cons 2.817500e-02   p_joint 3.007500e-02

Joint ci ratio: 1.121771e-01	ci left: 2.250111e-02	ci right 2.519456e-02	k: 1191	n:50000
Cons ci ratio: 1.031368e-01	ci left: 2.662992e-02	ci right 2.954521e-02	k: 1403	n:50000
KS ci ratio: 5.239420e-02	ci left: 9.803597e-02	ci right 1.033305e-01	k: 5033	n:50000
SMC4   50000 perm   14 sec   (3570 perm/sec)   p_kst 1.006600e-01   p_cons 2.806000e-02   p_joint 2.382000e-02

Joint ci ratio: 1.143285e-01	ci left: 1.811694e-02	ci right 2.032991e-02	k: 1152	n:60000
Cons ci ratio: 8.920036e-02	ci left: 2.979064e-02	ci right 3.258828e-02	k: 1870	n:60000
KS ci ratio: 4.764873e-02	ci left: 9.894620e-02	ci right 1.037924e-01	k: 6081	n:60000
SMC4   60000 perm   17 sec   (3502 perm/sec)   p_kst 1.013500e-01   p_cons 3.116667e-02   p_joint 1.920000e-02

Joint ci ratio: 9.462731e-02	ci left: 2.279510e-02	ci right 2.507316e-02	k: 1674	n:70000
Cons ci ratio: 8.244398e-02	ci left: 2.999438e-02	ci right 3.258752e-02	k: 2189	n:70000
KS ci ratio: 4.414766e-02	ci left: 9.898937e-02	ci right 1.034723e-01	k: 7085	n:70000
SMC4   70000 perm   20 sec   (3441 perm/sec)   p_kst 1.012143e-01   p_cons 3.127143e-02   p_joint 2.391429e-02

Outputting figure to mutsig2_images.part000000000162/SMC4.7_3959_70000_0.10121_0.031271_0.023914.png
                gene_name: SMC4
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 44 percent done.
SMOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
SMOC1   10000 perm   2 sec   (5695 perm/sec)   p_kst 5.901000e-01   p_cons 2.359000e-01   p_joint 5.691000e-01

Outputting figure to mutsig2_images.part000000000162/SMOC1.7_1356_10000_0.5901_0.2359_0.5691.png
                gene_name: SMOC1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 45 percent done.
SLC9A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
Cons ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
KS ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
SLC9A3   10000 perm   2 sec   (5886 perm/sec)   p_kst 2.664000e-01   p_cons 1.510000e-02   p_joint 5.180000e-02

Joint ci ratio: 8.939873e-02	ci left: 8.376601e-02	ci right 9.165433e-02	k: 1753	n:20000
Cons ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
KS ci ratio: 4.582126e-02	ci left: 2.617218e-01	ci right 2.740458e-01	k: 5357	n:20000
SLC9A3   20000 perm   4 sec   (5038 perm/sec)   p_kst 2.678500e-01   p_cons 1.650000e-02   p_joint 8.765000e-02

Joint ci ratio: 7.839325e-02	ci left: 7.390949e-02	ci right 7.997274e-02	k: 2307	n:30000
Cons ci ratio: 1.778596e-01	ci left: 1.451487e-02	ci right 1.737998e-02	k: 477	n:30000
KS ci ratio: 3.740980e-02	ci left: 2.628946e-01	ci right 2.729504e-01	k: 8037	n:30000
SLC9A3   30000 perm   6 sec   (4756 perm/sec)   p_kst 2.679000e-01   p_cons 1.590000e-02   p_joint 7.690000e-02

Joint ci ratio: 1.054390e-01	ci left: 3.163626e-02	ci right 3.518190e-02	k: 1335	n:40000
Cons ci ratio: 1.584250e-01	ci left: 1.387966e-02	ci right 1.629149e-02	k: 602	n:40000
KS ci ratio: 3.358754e-02	ci left: 2.497396e-01	ci right 2.582961e-01	k: 10160	n:40000
SLC9A3   40000 perm   9 sec   (4585 perm/sec)   p_kst 2.540000e-01   p_cons 1.505000e-02   p_joint 3.337500e-02

Joint ci ratio: 1.005504e-01	ci left: 2.801475e-02	ci right 3.100021e-02	k: 1474	n:50000
Cons ci ratio: 1.413908e-01	ci left: 1.406860e-02	ci right 1.622823e-02	k: 756	n:50000
KS ci ratio: 2.997086e-02	ci left: 2.510844e-01	ci right 2.587441e-01	k: 12745	n:50000
SLC9A3   50000 perm   11 sec   (4453 perm/sec)   p_kst 2.549000e-01   p_cons 1.512000e-02   p_joint 2.948000e-02

Joint ci ratio: 7.910590e-02	ci left: 3.775923e-02	ci right 4.088553e-02	k: 2358	n:60000
Cons ci ratio: 1.286697e-01	ci left: 1.425234e-02	ci right 1.622829e-02	k: 913	n:60000
KS ci ratio: 2.725217e-02	ci left: 2.529097e-01	ci right 2.599139e-01	k: 15384	n:60000
SLC9A3   60000 perm   14 sec   (4326 perm/sec)   p_kst 2.564000e-01   p_cons 1.521667e-02   p_joint 3.930000e-02

Joint ci ratio: 7.152600e-02	ci left: 3.966935e-02	ci right 4.262599e-02	k: 2879	n:70000
Cons ci ratio: 1.201785e-01	ci left: 1.407096e-02	ci right 1.588386e-02	k: 1047	n:70000
KS ci ratio: 2.525442e-02	ci left: 2.528127e-01	ci right 2.592932e-01	k: 17923	n:70000
SLC9A3   70000 perm   17 sec   (4232 perm/sec)   p_kst 2.560429e-01   p_cons 1.495714e-02   p_joint 4.112857e-02

Joint ci ratio: 6.610855e-02	ci left: 4.070651e-02	ci right 4.350182e-02	k: 3367	n:80000
Cons ci ratio: 1.126421e-01	ci left: 1.407185e-02	ci right 1.576360e-02	k: 1192	n:80000
KS ci ratio: 2.356503e-02	ci left: 2.539621e-01	ci right 2.600305e-01	k: 20559	n:80000
SLC9A3   80000 perm   19 sec   (4115 perm/sec)   p_kst 2.569875e-01   p_cons 1.490000e-02   p_joint 4.208750e-02

Joint ci ratio: 6.324824e-02	ci left: 3.963719e-02	ci right 4.223695e-02	k: 3683	n:90000
Cons ci ratio: 1.062452e-01	ci left: 1.410777e-02	ci right 1.570150e-02	k: 1340	n:90000
KS ci ratio: 2.224840e-02	ci left: 2.536050e-01	ci right 2.593218e-01	k: 23081	n:90000
SLC9A3   90000 perm   22 sec   (4029 perm/sec)   p_kst 2.564556e-01   p_cons 1.488889e-02   p_joint 4.092222e-02

Joint ci ratio: 6.007403e-02	ci left: 3.961178e-02	ci right 4.207494e-02	k: 4083	n:100000
Cons ci ratio: 1.007588e-01	ci left: 1.415820e-02	ci right 1.567013e-02	k: 1490	n:100000
KS ci ratio: 2.112090e-02	ci left: 2.534965e-01	ci right 2.589177e-01	k: 25620	n:100000
SLC9A3   100000 perm   25 sec   (3951 perm/sec)   p_kst 2.562000e-01   p_cons 1.490000e-02   p_joint 4.083000e-02

Joint ci ratio: 5.531980e-02	ci left: 4.244561e-02	ci right 4.486943e-02	k: 4801	n:110000
Cons ci ratio: 9.589487e-02	ci left: 1.424557e-02	ci right 1.568926e-02	k: 1645	n:110000
KS ci ratio: 2.015054e-02	ci left: 2.533866e-01	ci right 2.585535e-01	k: 28156	n:110000
SLC9A3   110000 perm   28 sec   (3878 perm/sec)   p_kst 2.559636e-01   p_cons 1.495455e-02   p_joint 4.364545e-02

Outputting figure to mutsig2_images.part000000000162/SLC9A3.6_2573_110000_0.25596_0.014955_0.043645.png
                gene_name: SLC9A3
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 47 percent done.
SLCO1B3
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
Cons ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
KS ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
SLCO1B3   10000 perm   2 sec   (5754 perm/sec)   p_kst 3.927000e-01   p_cons 2.601000e-01   p_joint 5.260000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1B3.4_2165_10000_0.3927_0.2601_0.526.png
                gene_name: SLCO1B3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 48 percent done.
SLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
SLK   10000 perm   2 sec   (4346 perm/sec)   p_kst 4.864000e-01   p_cons 6.600000e-02   p_joint 1.490000e-01

Joint ci ratio: 5.389127e-02	ci left: 2.035311e-01	ci right 2.148536e-01	k: 4183	n:20000
Cons ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
KS ci ratio: 2.811569e-02	ci left: 4.858977e-01	ci right 4.998044e-01	k: 9857	n:20000
SLK   20000 perm   5 sec   (3868 perm/sec)   p_kst 4.928500e-01   p_cons 6.780000e-02   p_joint 2.091500e-01

Joint ci ratio: 4.465991e-02	ci left: 1.997497e-01	ci right 2.089076e-01	k: 6129	n:30000
Cons ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
KS ci ratio: 2.293629e-02	ci left: 4.876268e-01	ci right 4.989745e-01	k: 14799	n:30000
SLK   30000 perm   8 sec   (3704 perm/sec)   p_kst 4.933000e-01   p_cons 6.676667e-02   p_joint 2.043000e-01

Outputting figure to mutsig2_images.part000000000162/SLK.6_3784_30000_0.4933_0.066767_0.2043.png
                gene_name: SLK
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 50 percent done.
SMC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
Cons ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
SMC1B   10000 perm   2 sec   (4352 perm/sec)   p_kst 9.950000e-02   p_cons 1.725000e-01   p_joint 7.350000e-02

Joint ci ratio: 8.653582e-02	ci left: 8.900926e-02	ci right 9.710950e-02	k: 1860	n:20000
Cons ci ratio: 6.024545e-02	ci left: 1.694107e-01	ci right 1.799840e-01	k: 3493	n:20000
KS ci ratio: 8.449849e-02	ci left: 9.303020e-02	ci right 1.012873e-01	k: 1942	n:20000
SMC1B   20000 perm   5 sec   (3883 perm/sec)   p_kst 9.710000e-02   p_cons 1.746500e-01   p_joint 9.300000e-02

Outputting figure to mutsig2_images.part000000000162/SMC1B.6_3808_20000_0.0971_0.17465_0.093.png
                gene_name: SMC1B
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 52 percent done.
SMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
Cons ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
KS ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
SMC2   10000 perm   2 sec   (4525 perm/sec)   p_kst 5.233000e-01   p_cons 7.630000e-01   p_joint 8.839000e-01

Outputting figure to mutsig2_images.part000000000162/SMC2.6_3690_10000_0.5233_0.763_0.8839.png
                gene_name: SMC2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 53 percent done.
SMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
Cons ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
KS ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
SMC3   10000 perm   2 sec   (4633 perm/sec)   p_kst 5.677000e-01   p_cons 1.594000e-01   p_joint 4.221000e-01

Outputting figure to mutsig2_images.part000000000162/SMC3.6_3770_10000_0.5677_0.1594_0.4221.png
                gene_name: SMC3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 55 percent done.
SMC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
Cons ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
KS ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
SMC6   10000 perm   2 sec   (4320 perm/sec)   p_kst 5.183000e-01   p_cons 3.176000e-01   p_joint 5.366000e-01

Outputting figure to mutsig2_images.part000000000162/SMC6.6_3380_10000_0.5183_0.3176_0.5366.png
                gene_name: SMC6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 56 percent done.
SLCO3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
KS ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
SLCO3A1   10000 perm   2 sec   (5090 perm/sec)   p_kst 6.123000e-01   p_cons 1.560000e-02   p_joint 1.070000e-01

Joint ci ratio: 9.678552e-02	ci left: 7.211979e-02	ci right 7.950409e-02	k: 1515	n:20000
Cons ci ratio: 2.343168e-01	ci left: 1.218208e-02	ci right 1.546151e-02	k: 275	n:20000
KS ci ratio: 2.195332e-02	ci left: 6.077134e-01	ci right 6.212533e-01	k: 12290	n:20000
SLCO3A1   20000 perm   4 sec   (4481 perm/sec)   p_kst 6.145000e-01   p_cons 1.375000e-02   p_joint 7.575000e-02

Joint ci ratio: 6.382242e-02	ci left: 1.081237e-01	ci right 1.152850e-01	k: 3350	n:30000
Cons ci ratio: 1.966889e-01	ci left: 1.178058e-02	ci right 1.438165e-02	k: 391	n:30000
KS ci ratio: 1.790242e-02	ci left: 6.095664e-01	ci right 6.206113e-01	k: 18453	n:30000
SLCO3A1   30000 perm   7 sec   (4199 perm/sec)   p_kst 6.151000e-01   p_cons 1.303333e-02   p_joint 1.116667e-01

Joint ci ratio: 6.721093e-02	ci left: 7.573475e-02	ci right 8.102665e-02	k: 3134	n:40000
Cons ci ratio: 1.694644e-01	ci left: 1.208054e-02	ci right 1.434095e-02	k: 527	n:40000
KS ci ratio: 1.519549e-02	ci left: 6.198082e-01	ci right 6.293237e-01	k: 24983	n:40000
SLCO3A1   40000 perm   10 sec   (4063 perm/sec)   p_kst 6.245750e-01   p_cons 1.317500e-02   p_joint 7.835000e-02

Joint ci ratio: 5.252773e-02	ci left: 9.758136e-02	ci right 1.028652e-01	k: 5010	n:50000
Cons ci ratio: 1.519242e-01	ci left: 1.214096e-02	ci right 1.415615e-02	k: 656	n:50000
KS ci ratio: 1.359988e-02	ci left: 6.200178e-01	ci right 6.285278e-01	k: 31214	n:50000
SLCO3A1   50000 perm   13 sec   (3961 perm/sec)   p_kst 6.242800e-01   p_cons 1.312000e-02   p_joint 1.002000e-01

Joint ci ratio: 5.092848e-02	ci left: 8.757337e-02	ci right 9.216639e-02	k: 5391	n:60000
Cons ci ratio: 1.362054e-01	ci left: 1.268849e-02	ci right 1.455899e-02	k: 816	n:60000
KS ci ratio: 1.242901e-02	ci left: 6.198595e-01	ci right 6.276286e-01	k: 37425	n:60000
SLCO3A1   60000 perm   15 sec   (3877 perm/sec)   p_kst 6.237500e-01   p_cons 1.360000e-02   p_joint 8.985000e-02

Joint ci ratio: 4.760803e-02	ci left: 8.619395e-02	ci right 9.041168e-02	k: 6180	n:70000
Cons ci ratio: 1.260460e-01	ci left: 1.276889e-02	ci right 1.450034e-02	k: 953	n:70000
KS ci ratio: 1.149182e-02	ci left: 6.207716e-01	ci right 6.279609e-01	k: 43706	n:70000
SLCO3A1   70000 perm   18 sec   (3799 perm/sec)   p_kst 6.243714e-01   p_cons 1.361429e-02   p_joint 8.828571e-02

Joint ci ratio: 5.160978e-02	ci left: 6.552394e-02	ci right 6.900753e-02	k: 5380	n:80000
Cons ci ratio: 1.194296e-01	ci left: 1.249336e-02	ci right 1.409223e-02	k: 1062	n:80000
KS ci ratio: 1.077277e-02	ci left: 6.199942e-01	ci right 6.267219e-01	k: 49869	n:80000
SLCO3A1   80000 perm   21 sec   (3721 perm/sec)   p_kst 6.233625e-01   p_cons 1.327500e-02   p_joint 6.725000e-02

Joint ci ratio: 4.411155e-02	ci left: 7.888451e-02	ci right 8.245369e-02	k: 7259	n:90000
Cons ci ratio: 1.124031e-01	ci left: 1.258335e-02	ci right 1.409271e-02	k: 1199	n:90000
KS ci ratio: 1.016620e-02	ci left: 6.197464e-01	ci right 6.260901e-01	k: 56063	n:90000
SLCO3A1   90000 perm   25 sec   (3653 perm/sec)   p_kst 6.229222e-01   p_cons 1.332222e-02   p_joint 8.065556e-02

Joint ci ratio: 4.192900e-02	ci left: 7.869218e-02	ci right 8.207221e-02	k: 8037	n:100000
Cons ci ratio: 1.062855e-01	ci left: 1.270624e-02	ci right 1.414219e-02	k: 1341	n:100000
KS ci ratio: 9.637171e-03	ci left: 6.202682e-01	ci right 6.262847e-01	k: 62328	n:100000
SLCO3A1   100000 perm   28 sec   (3592 perm/sec)   p_kst 6.232800e-01   p_cons 1.341000e-02   p_joint 8.037000e-02

Joint ci ratio: 4.456071e-02	ci left: 6.426079e-02	ci right 6.719852e-02	k: 7229	n:110000
Cons ci ratio: 1.012767e-01	ci left: 1.275542e-02	ci right 1.412496e-02	k: 1477	n:110000
KS ci ratio: 9.178341e-03	ci left: 6.209386e-01	ci right 6.266731e-01	k: 68619	n:110000
SLCO3A1   110000 perm   31 sec   (3520 perm/sec)   p_kst 6.238091e-01   p_cons 1.342727e-02   p_joint 6.571818e-02

Joint ci ratio: 4.264707e-02	ci left: 6.437055e-02	ci right 6.718381e-02	k: 7892	n:120000
Cons ci ratio: 9.625246e-02	ci left: 1.297669e-02	ci right 1.429697e-02	k: 1635	n:120000
KS ci ratio: 8.795260e-03	ci left: 6.206514e-01	ci right 6.261426e-01	k: 74808	n:120000
SLCO3A1   120000 perm   35 sec   (3462 perm/sec)   p_kst 6.234000e-01   p_cons 1.362500e-02   p_joint 6.576667e-02

Outputting figure to mutsig2_images.part000000000162/SLCO3A1.5_2260_120000_0.6234_0.013625_0.065767.png
                gene_name: SLCO3A1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.067 

Current progress: 58 percent done.
SLFN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLFN5   10000 perm   2 sec   (5157 perm/sec)   p_kst 1   p_cons 1.500000e-03   p_joint 1.210000e-02

Joint ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
Cons ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
SLFN5   20000 perm   4 sec   (4547 perm/sec)   p_kst 1   p_cons 1.950000e-03   p_joint 2.145000e-02

Joint ci ratio: 1.872352e-01	ci left: 1.305063e-02	ci right 1.577793e-02	k: 431	n:30000
Cons ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
SLFN5   30000 perm   7 sec   (4291 perm/sec)   p_kst 1   p_cons 2.000000e-03   p_joint 1.436667e-02

Joint ci ratio: 1.473949e-01	ci left: 1.609305e-02	ci right 1.867770e-02	k: 694	n:40000
Cons ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
SLFN5   40000 perm   10 sec   (4143 perm/sec)   p_kst 1   p_cons 2.100000e-03   p_joint 1.735000e-02

Joint ci ratio: 1.191751e-01	ci left: 1.991639e-02	ci right 2.245963e-02	k: 1058	n:50000
Cons ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
KS ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
SLFN5   50000 perm   12 sec   (4035 perm/sec)   p_kst 1   p_cons 2.180000e-03   p_joint 2.116000e-02

Joint ci ratio: 1.032721e-01	ci left: 2.223766e-02	ci right 2.467540e-02	k: 1406	n:60000
Cons ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
KS ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
SLFN5   60000 perm   15 sec   (3931 perm/sec)   p_kst 1   p_cons 2.166667e-03   p_joint 2.343333e-02

Joint ci ratio: 9.233732e-02	ci left: 2.393979e-02	ci right 2.627123e-02	k: 1756	n:70000
Cons ci ratio: 3.124968e-01	ci left: 1.892884e-03	ci right 2.606525e-03	k: 156	n:70000
KS ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
SLFN5   70000 perm   18 sec   (3853 perm/sec)   p_kst 1   p_cons 2.228571e-03   p_joint 2.508571e-02

Joint ci ratio: 1.014732e-01	ci left: 1.738246e-02	ci right 1.925271e-02	k: 1464	n:80000
Cons ci ratio: 2.951541e-01	ci left: 1.875679e-03	ci right 2.536253e-03	k: 175	n:80000
KS ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
SLFN5   80000 perm   21 sec   (3771 perm/sec)   p_kst 1   p_cons 2.187500e-03   p_joint 1.830000e-02

Joint ci ratio: 7.894215e-02	ci left: 2.561294e-02	ci right 2.772883e-02	k: 2399	n:90000
Cons ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
KS ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
SLFN5   90000 perm   24 sec   (3702 perm/sec)   p_kst 1   p_cons 2.222222e-03   p_joint 2.665556e-02

Joint ci ratio: 7.722355e-02	ci left: 2.414907e-02	ci right 2.609861e-02	k: 2511	n:100000
Cons ci ratio: 2.658167e-01	ci left: 1.881783e-03	ci right 2.467692e-03	k: 216	n:100000
KS ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
SLFN5   100000 perm   28 sec   (3636 perm/sec)   p_kst 1   p_cons 2.160000e-03   p_joint 2.511000e-02

Joint ci ratio: 8.001204e-02	ci left: 2.049943e-02	ci right 2.221685e-02	k: 2348	n:110000
Cons ci ratio: 2.491423e-01	ci left: 1.965866e-03	ci right 2.533615e-03	k: 246	n:110000
KS ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
SLFN5   110000 perm   31 sec   (3561 perm/sec)   p_kst 1   p_cons 2.236364e-03   p_joint 2.134545e-02

Joint ci ratio: 8.034684e-02	ci left: 1.866793e-02	ci right 2.023875e-02	k: 2333	n:120000
Cons ci ratio: 2.378530e-01	ci left: 1.989850e-03	ci right 2.534651e-03	k: 270	n:120000
KS ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
SLFN5   120000 perm   34 sec   (3498 perm/sec)   p_kst 1   p_cons 2.250000e-03   p_joint 1.944167e-02

Joint ci ratio: 8.348394e-02	ci left: 1.598022e-02	ci right 1.737992e-02	k: 2167	n:130000
Cons ci ratio: 2.299326e-01	ci left: 1.974374e-03	ci right 2.494383e-03	k: 289	n:130000
KS ci ratio: 3.015338e-05	ci left: 9.999716e-01	ci right 1	k: 130000	n:130000
SLFN5   130000 perm   38 sec   (3438 perm/sec)   p_kst 1   p_cons 2.223077e-03   p_joint 1.666923e-02

Joint ci ratio: 8.212231e-02	ci left: 1.535620e-02	ci right 1.667824e-02	k: 2241	n:140000
Cons ci ratio: 2.231161e-01	ci left: 1.954622e-03	ci right 2.452070e-03	k: 307	n:140000
KS ci ratio: 2.799960e-05	ci left: 9.999737e-01	ci right 1	k: 140000	n:140000
SLFN5   140000 perm   41 sec   (3384 perm/sec)   p_kst 1   p_cons 2.192857e-03   p_joint 1.600714e-02

Joint ci ratio: 8.295927e-02	ci left: 1.405784e-02	ci right 1.528103e-02	k: 2199	n:150000
Cons ci ratio: 2.145754e-01	ci left: 1.981851e-03	ci right 2.464380e-03	k: 332	n:150000
KS ci ratio: 2.613298e-05	ci left: 9.999754e-01	ci right 1	k: 150000	n:150000
SLFN5   150000 perm   45 sec   (3330 perm/sec)   p_kst 1   p_cons 2.213333e-03   p_joint 1.466000e-02

Joint ci ratio: 8.156254e-02	ci left: 1.365046e-02	ci right 1.481724e-02	k: 2276	n:160000
Cons ci ratio: 2.075277e-01	ci left: 1.994140e-03	ci right 2.461690e-03	k: 355	n:160000
KS ci ratio: 2.449969e-05	ci left: 9.999769e-01	ci right 1	k: 160000	n:160000
SLFN5   160000 perm   49 sec   (3278 perm/sec)   p_kst 1   p_cons 2.218750e-03   p_joint 1.422500e-02

Joint ci ratio: 8.501118e-02	ci left: 1.182751e-02	ci right 1.288334e-02	k: 2099	n:170000
Cons ci ratio: 2.006019e-01	ci left: 2.016386e-03	ci right 2.471444e-03	k: 380	n:170000
KS ci ratio: 2.305855e-05	ci left: 9.999783e-01	ci right 1	k: 170000	n:170000
SLFN5   170000 perm   53 sec   (3231 perm/sec)   p_kst 1   p_cons 2.235294e-03   p_joint 1.234706e-02

Joint ci ratio: 7.618639e-02	ci left: 1.394191e-02	ci right 1.505158e-02	k: 2608	n:180000
Cons ci ratio: 1.933739e-01	ci left: 2.057536e-03	ci right 2.503181e-03	k: 409	n:180000
KS ci ratio: 2.177754e-05	ci left: 9.999795e-01	ci right 1	k: 180000	n:180000
SLFN5   180000 perm   57 sec   (3180 perm/sec)   p_kst 1   p_cons 2.272222e-03   p_joint 1.448889e-02

Joint ci ratio: 8.092128e-02	ci left: 1.170605e-02	ci right 1.269839e-02	k: 2317	n:190000
Cons ci ratio: 1.888247e-01	ci left: 2.049471e-03	ci right 2.481729e-03	k: 429	n:190000
KS ci ratio: 2.063136e-05	ci left: 9.999806e-01	ci right 1	k: 190000	n:190000
SLFN5   190000 perm   61 sec   (3135 perm/sec)   p_kst 1   p_cons 2.257895e-03   p_joint 1.219474e-02

Joint ci ratio: 7.261928e-02	ci left: 1.383824e-02	ci right 1.488591e-02	k: 2871	n:200000
Cons ci ratio: 1.837653e-01	ci left: 2.061403e-03	ci right 2.483231e-03	k: 453	n:200000
KS ci ratio: 1.959980e-05	ci left: 9.999816e-01	ci right 1	k: 200000	n:200000
SLFN5   200000 perm   65 sec   (3091 perm/sec)   p_kst 1   p_cons 2.265000e-03   p_joint 1.435500e-02

Joint ci ratio: 7.092407e-02	ci left: 1.382930e-02	ci right 1.485084e-02	k: 3010	n:210000
Cons ci ratio: 1.783457e-01	ci left: 2.090535e-03	ci right 2.504347e-03	k: 481	n:210000
KS ci ratio: 1.866649e-05	ci left: 9.999824e-01	ci right 1	k: 210000	n:210000
SLFN5   210000 perm   69 sec   (3049 perm/sec)   p_kst 1   p_cons 2.290476e-03   p_joint 1.433333e-02

Joint ci ratio: 7.346192e-02	ci left: 1.230765e-02	ci right 1.325071e-02	k: 2810	n:220000
Cons ci ratio: 1.745838e-01	ci left: 2.086749e-03	ci right 2.490180e-03	k: 502	n:220000
KS ci ratio: 1.781802e-05	ci left: 9.999832e-01	ci right 1	k: 220000	n:220000
SLFN5   220000 perm   73 sec   (3001 perm/sec)   p_kst 1   p_cons 2.281818e-03   p_joint 1.277273e-02

Joint ci ratio: 7.213080e-02	ci left: 1.222073e-02	ci right 1.313944e-02	k: 2915	n:230000
Cons ci ratio: 1.708871e-01	ci left: 2.087538e-03	ci right 2.481695e-03	k: 524	n:230000
KS ci ratio: 1.704333e-05	ci left: 9.999840e-01	ci right 1	k: 230000	n:230000
SLFN5   230000 perm   78 sec   (2960 perm/sec)   p_kst 1   p_cons 2.278261e-03   p_joint 1.267391e-02

Joint ci ratio: 7.085759e-02	ci left: 1.214528e-02	ci right 1.304155e-02	k: 3021	n:240000
Cons ci ratio: 1.672625e-01	ci left: 2.092336e-03	ci right 2.478175e-03	k: 547	n:240000
KS ci ratio: 1.633320e-05	ci left: 9.999846e-01	ci right 1	k: 240000	n:240000
SLFN5   240000 perm   82 sec   (2921 perm/sec)   p_kst 1   p_cons 2.279167e-03   p_joint 1.258750e-02

Joint ci ratio: 6.845164e-02	ci left: 1.250457e-02	ci right 1.339477e-02	k: 3236	n:250000
Cons ci ratio: 1.628616e-01	ci left: 2.123689e-03	ci right 2.503997e-03	k: 577	n:250000
KS ci ratio: 1.567987e-05	ci left: 9.999852e-01	ci right 1	k: 250000	n:250000
SLFN5   250000 perm   87 sec   (2885 perm/sec)   p_kst 1   p_cons 2.308000e-03   p_joint 1.294400e-02

Joint ci ratio: 6.270691e-02	ci left: 1.434313e-02	ci right 1.527542e-02	k: 3849	n:260000
Cons ci ratio: 1.601160e-01	ci left: 2.115822e-03	ci right 2.487719e-03	k: 597	n:260000
KS ci ratio: 1.507681e-05	ci left: 9.999858e-01	ci right 1	k: 260000	n:260000
SLFN5   260000 perm   91 sec   (2848 perm/sec)   p_kst 1   p_cons 2.296154e-03   p_joint 1.480385e-02

Joint ci ratio: 6.622320e-02	ci left: 1.238666e-02	ci right 1.323866e-02	k: 3458	n:270000
Cons ci ratio: 1.567439e-01	ci left: 2.129938e-03	ci right 2.495691e-03	k: 623	n:270000
KS ci ratio: 1.451841e-05	ci left: 9.999863e-01	ci right 1	k: 270000	n:270000
SLFN5   270000 perm   96 sec   (2812 perm/sec)   p_kst 1   p_cons 2.307407e-03   p_joint 1.280741e-02

Joint ci ratio: 6.541064e-02	ci left: 1.224985e-02	ci right 1.308171e-02	k: 3545	n:280000
Cons ci ratio: 1.547741e-01	ci left: 2.108783e-03	ci right 2.465930e-03	k: 639	n:280000
KS ci ratio: 1.399990e-05	ci left: 9.999868e-01	ci right 1	k: 280000	n:280000
SLFN5   280000 perm   101 sec   (2775 perm/sec)   p_kst 1   p_cons 2.282143e-03   p_joint 1.266071e-02

Joint ci ratio: 5.958819e-02	ci left: 1.426511e-02	ci right 1.514462e-02	k: 4263	n:290000
Cons ci ratio: 1.527602e-01	ci left: 2.092430e-03	ci right 2.441774e-03	k: 656	n:290000
KS ci ratio: 1.351715e-05	ci left: 9.999873e-01	ci right 1	k: 290000	n:290000
SLFN5   290000 perm   106 sec   (2742 perm/sec)   p_kst 1   p_cons 2.262069e-03   p_joint 1.470000e-02

Joint ci ratio: 5.835236e-02	ci left: 1.438736e-02	ci right 1.525539e-02	k: 4445	n:300000
Cons ci ratio: 1.501544e-01	ci left: 2.096444e-03	ci right 2.439951e-03	k: 679	n:300000
KS ci ratio: 1.306658e-05	ci left: 9.999877e-01	ci right 1	k: 300000	n:300000
SLFN5   300000 perm   111 sec   (2709 perm/sec)   p_kst 1   p_cons 2.263333e-03   p_joint 1.481667e-02

Joint ci ratio: 5.736041e-02	ci left: 1.441602e-02	ci right 1.527050e-02	k: 4600	n:310000
Cons ci ratio: 1.473628e-01	ci left: 2.109567e-03	ci right 2.448232e-03	k: 705	n:310000
KS ci ratio: 1.264508e-05	ci left: 9.999881e-01	ci right 1	k: 310000	n:310000
SLFN5   310000 perm   116 sec   (2678 perm/sec)   p_kst 1   p_cons 2.274194e-03   p_joint 1.483871e-02

Joint ci ratio: 5.676366e-02	ci left: 1.426737e-02	ci right 1.510395e-02	k: 4698	n:320000
Cons ci ratio: 1.453195e-01	ci left: 2.103854e-03	ci right 2.436512e-03	k: 725	n:320000
KS ci ratio: 1.224992e-05	ci left: 9.999885e-01	ci right 1	k: 320000	n:320000
SLFN5   320000 perm   121 sec   (2647 perm/sec)   p_kst 1   p_cons 2.265625e-03   p_joint 1.468125e-02

Joint ci ratio: 6.547418e-02	ci left: 1.039349e-02	ci right 1.109999e-02	k: 3545	n:330000
Cons ci ratio: 1.551658e-01	ci left: 1.780508e-03	ci right 2.082891e-03	k: 636	n:330000
KS ci ratio: 1.187872e-05	ci left: 9.999888e-01	ci right 1	k: 330000	n:330000
SLFN5   330000 perm   126 sec   (2613 perm/sec)   p_kst 1   p_cons 1.927273e-03   p_joint 1.074242e-02

Joint ci ratio: 6.165389e-02	ci left: 1.138759e-02	ci right 1.211489e-02	k: 3994	n:340000
Cons ci ratio: 1.520915e-01	ci left: 1.801673e-03	ci right 2.101035e-03	k: 662	n:340000
KS ci ratio: 1.152934e-05	ci left: 9.999892e-01	ci right 1	k: 340000	n:340000
SLFN5   340000 perm   132 sec   (2585 perm/sec)   p_kst 1   p_cons 1.947059e-03   p_joint 1.174706e-02

Joint ci ratio: 6.175825e-02	ci left: 1.102841e-02	ci right 1.173400e-02	k: 3982	n:350000
Cons ci ratio: 1.502896e-01	ci left: 1.794181e-03	ci right 2.088449e-03	k: 678	n:350000
KS ci ratio: 1.119994e-05	ci left: 9.999895e-01	ci right 1	k: 350000	n:350000
SLFN5   350000 perm   137 sec   (2557 perm/sec)   p_kst 1   p_cons 1.937143e-03   p_joint 1.137714e-02

Joint ci ratio: 6.099846e-02	ci left: 1.099557e-02	ci right 1.169010e-02	k: 4082	n:360000
Cons ci ratio: 1.478063e-01	ci left: 1.805850e-03	ci right 2.096705e-03	k: 701	n:360000
KS ci ratio: 1.088883e-05	ci left: 9.999898e-01	ci right 1	k: 360000	n:360000
SLFN5   360000 perm   142 sec   (2527 perm/sec)   p_kst 1   p_cons 1.947222e-03   p_joint 1.133889e-02

Joint ci ratio: 6.111395e-02	ci left: 1.066108e-02	ci right 1.133580e-02	k: 4068	n:370000
Cons ci ratio: 1.462530e-01	ci left: 1.796091e-03	ci right 2.082069e-03	k: 716	n:370000
KS ci ratio: 1.059454e-05	ci left: 9.999900e-01	ci right 1	k: 370000	n:370000
SLFN5   370000 perm   148 sec   (2498 perm/sec)   p_kst 1   p_cons 1.935135e-03   p_joint 1.099459e-02

Joint ci ratio: 6.074674e-02	ci left: 1.051007e-02	ci right 1.117110e-02	k: 4118	n:380000
Cons ci ratio: 1.441568e-01	ci left: 1.802082e-03	ci right 2.084547e-03	k: 737	n:380000
KS ci ratio: 1.031574e-05	ci left: 9.999903e-01	ci right 1	k: 380000	n:380000
SLFN5   380000 perm   154 sec   (2471 perm/sec)   p_kst 1   p_cons 1.939474e-03   p_joint 1.083684e-02

Joint ci ratio: 6.000160e-02	ci left: 1.050070e-02	ci right 1.115275e-02	k: 4221	n:390000
Cons ci ratio: 1.424306e-01	ci left: 1.800373e-03	ci right 2.078905e-03	k: 755	n:390000
KS ci ratio: 1.005123e-05	ci left: 9.999905e-01	ci right 1	k: 390000	n:390000
SLFN5   390000 perm   160 sec   (2444 perm/sec)   p_kst 1   p_cons 1.935897e-03   p_joint 1.082308e-02

Joint ci ratio: 6.037215e-02	ci left: 1.011500e-02	ci right 1.074712e-02	k: 4171	n:400000
Cons ci ratio: 1.408561e-01	ci left: 1.796358e-03	ci right 2.070938e-03	k: 772	n:400000
KS ci ratio: 9.799951e-06	ci left: 9.999908e-01	ci right 1	k: 400000	n:400000
SLFN5   400000 perm   165 sec   (2418 perm/sec)   p_kst 1   p_cons 1.930000e-03   p_joint 1.042750e-02

Joint ci ratio: 6.032880e-02	ci left: 9.885075e-03	ci right 1.050236e-02	k: 4178	n:410000
Cons ci ratio: 1.388056e-01	ci left: 1.806680e-03	ci right 2.078485e-03	k: 795	n:410000
KS ci ratio: 9.560929e-06	ci left: 9.999910e-01	ci right 1	k: 410000	n:410000
SLFN5   410000 perm   171 sec   (2393 perm/sec)   p_kst 1   p_cons 1.939024e-03   p_joint 1.019024e-02

Joint ci ratio: 4.855204e-02	ci left: 1.491212e-02	ci right 1.565649e-02	k: 6418	n:420000
Cons ci ratio: 1.266373e-01	ci left: 2.132015e-03	ci right 2.422539e-03	k: 955	n:420000
KS ci ratio: 9.333289e-06	ci left: 9.999912e-01	ci right 1	k: 420000	n:420000
SLFN5   420000 perm   177 sec   (2367 perm/sec)   p_kst 1   p_cons 2.273810e-03   p_joint 1.528095e-02

Joint ci ratio: 4.792434e-02	ci left: 1.495362e-02	ci right 1.569014e-02	k: 6587	n:430000
Cons ci ratio: 1.248854e-01	ci left: 2.143249e-03	ci right 2.430965e-03	k: 982	n:430000
KS ci ratio: 9.116237e-06	ci left: 9.999914e-01	ci right 1	k: 430000	n:430000
SLFN5   430000 perm   184 sec   (2343 perm/sec)   p_kst 1   p_cons 2.283721e-03   p_joint 1.531860e-02

Joint ci ratio: 4.793651e-02	ci left: 1.461146e-02	ci right 1.533131e-02	k: 6586	n:440000
Cons ci ratio: 1.233881e-01	ci left: 2.147391e-03	ci right 2.431954e-03	k: 1006	n:440000
KS ci ratio: 8.909050e-06	ci left: 9.999916e-01	ci right 1	k: 440000	n:440000
SLFN5   440000 perm   190 sec   (2315 perm/sec)   p_kst 1   p_cons 2.286364e-03   p_joint 1.496818e-02

Joint ci ratio: 4.794091e-02	ci left: 1.428890e-02	ci right 1.499293e-02	k: 6587	n:450000
Cons ci ratio: 1.221216e-01	ci left: 2.144905e-03	ci right 2.426010e-03	k: 1027	n:450000
KS ci ratio: 8.711072e-06	ci left: 9.999918e-01	ci right 1	k: 450000	n:450000
SLFN5   450000 perm   197 sec   (2288 perm/sec)   p_kst 1   p_cons 2.282222e-03   p_joint 1.463778e-02

Joint ci ratio: 4.743983e-02	ci left: 1.427899e-02	ci right 1.497497e-02	k: 6727	n:460000
Cons ci ratio: 1.209511e-01	ci left: 2.140432e-03	ci right 2.418070e-03	k: 1047	n:460000
KS ci ratio: 8.521702e-06	ci left: 9.999920e-01	ci right 1	k: 460000	n:460000
SLFN5   460000 perm   203 sec   (2264 perm/sec)   p_kst 1   p_cons 2.276087e-03   p_joint 1.462391e-02

Joint ci ratio: 4.778714e-02	ci left: 1.377748e-02	ci right 1.445407e-02	k: 6633	n:470000
Cons ci ratio: 1.195334e-01	ci left: 2.146483e-03	ci right 2.421412e-03	k: 1072	n:470000
KS ci ratio: 8.340390e-06	ci left: 9.999922e-01	ci right 1	k: 470000	n:470000
SLFN5   470000 perm   210 sec   (2242 perm/sec)   p_kst 1   p_cons 2.280851e-03   p_joint 1.411277e-02

Joint ci ratio: 4.626250e-02	ci left: 1.439644e-02	ci right 1.508027e-02	k: 7073	n:480000
Cons ci ratio: 1.186529e-01	ci left: 2.134104e-03	ci right 2.405293e-03	k: 1088	n:480000
KS ci ratio: 8.166633e-06	ci left: 9.999923e-01	ci right 1	k: 480000	n:480000
SLFN5   480000 perm   216 sec   (2220 perm/sec)   p_kst 1   p_cons 2.266667e-03   p_joint 1.473542e-02

Joint ci ratio: 4.620333e-02	ci left: 1.414294e-02	ci right 1.481384e-02	k: 7093	n:490000
Cons ci ratio: 1.174194e-01	ci left: 2.136104e-03	ci right 2.404529e-03	k: 1111	n:490000
KS ci ratio: 7.999967e-06	ci left: 9.999925e-01	ci right 1	k: 490000	n:490000
SLFN5   490000 perm   223 sec   (2199 perm/sec)   p_kst 1   p_cons 2.267347e-03   p_joint 1.447551e-02

Joint ci ratio: 4.615735e-02	ci left: 1.389167e-02	ci right 1.454998e-02	k: 7109	n:500000
Cons ci ratio: 1.159678e-01	ci left: 2.147748e-03	ci right 2.414071e-03	k: 1139	n:500000
KS ci ratio: 7.839969e-06	ci left: 9.999926e-01	ci right 1	k: 500000	n:500000
SLFN5   500000 perm   230 sec   (2178 perm/sec)   p_kst 1   p_cons 2.278000e-03   p_joint 1.421800e-02

Joint ci ratio: 5.383745e-02	ci left: 1.001116e-02	ci right 1.056697e-02	k: 5246	n:510000
Cons ci ratio: 1.242135e-01	ci left: 1.827931e-03	ci right 2.071900e-03	k: 993	n:510000
KS ci ratio: 7.686244e-06	ci left: 9.999928e-01	ci right 1	k: 510000	n:510000
SLFN5   510000 perm   236 sec   (2159 perm/sec)   p_kst 1   p_cons 1.947059e-03   p_joint 1.028627e-02

Joint ci ratio: 5.336710e-02	ci left: 9.995088e-03	ci right 1.054500e-02	k: 5339	n:520000
Cons ci ratio: 1.232261e-01	ci left: 1.822596e-03	ci right 2.063777e-03	k: 1009	n:520000
KS ci ratio: 7.538433e-06	ci left: 9.999929e-01	ci right 1	k: 520000	n:520000
SLFN5   520000 perm   243 sec   (2138 perm/sec)   p_kst 1   p_cons 1.940385e-03   p_joint 1.026731e-02

Joint ci ratio: 5.336223e-02	ci left: 9.810200e-03	ci right 1.034989e-02	k: 5341	n:530000
Cons ci ratio: 1.217281e-01	ci left: 1.833932e-03	ci right 2.073451e-03	k: 1034	n:530000
KS ci ratio: 7.396199e-06	ci left: 9.999930e-01	ci right 1	k: 530000	n:530000
SLFN5   530000 perm   250 sec   (2118 perm/sec)   p_kst 1   p_cons 1.950943e-03   p_joint 1.007736e-02

Joint ci ratio: 5.279137e-02	ci left: 9.840497e-03	ci right 1.037589e-02	k: 5457	n:540000
Cons ci ratio: 1.210874e-01	ci left: 1.819721e-03	ci right 2.056044e-03	k: 1045	n:540000
KS ci ratio: 7.259232e-06	ci left: 9.999932e-01	ci right 1	k: 540000	n:540000
SLFN5   540000 perm   257 sec   (2099 perm/sec)   p_kst 1   p_cons 1.935185e-03   p_joint 1.010556e-02

Joint ci ratio: 5.243840e-02	ci left: 9.794348e-03	ci right 1.032356e-02	k: 5531	n:550000
Cons ci ratio: 1.203995e-01	ci left: 1.807794e-03	ci right 2.041139e-03	k: 1057	n:550000
KS ci ratio: 7.127247e-06	ci left: 9.999933e-01	ci right 1	k: 550000	n:550000
SLFN5   550000 perm   264 sec   (2080 perm/sec)   p_kst 1   p_cons 1.921818e-03   p_joint 1.005636e-02

Joint ci ratio: 4.970257e-02	ci left: 1.071259e-02	ci right 1.126035e-02	k: 6151	n:560000
Cons ci ratio: 1.194440e-01	ci left: 1.804958e-03	ci right 2.035957e-03	k: 1074	n:560000
KS ci ratio: 6.999975e-06	ci left: 9.999934e-01	ci right 1	k: 560000	n:560000
SLFN5   560000 perm   272 sec   (2061 perm/sec)   p_kst 1   p_cons 1.917857e-03   p_joint 1.098393e-02

Joint ci ratio: 4.959344e-02	ci left: 1.057314e-02	ci right 1.111255e-02	k: 6179	n:570000
Cons ci ratio: 1.182399e-01	ci left: 1.810742e-03	ci right 2.039982e-03	k: 1096	n:570000
KS ci ratio: 6.877169e-06	ci left: 9.999935e-01	ci right 1	k: 570000	n:570000
SLFN5   570000 perm   279 sec   (2043 perm/sec)   p_kst 1   p_cons 1.922807e-03   p_joint 1.084035e-02

Joint ci ratio: 4.723989e-02	ci left: 1.145551e-02	ci right 1.201145e-02	k: 6804	n:580000
Cons ci ratio: 1.170192e-01	ci left: 1.818011e-03	ci right 2.045631e-03	k: 1119	n:580000
KS ci ratio: 6.758597e-06	ci left: 9.999936e-01	ci right 1	k: 580000	n:580000
SLFN5   580000 perm   286 sec   (2025 perm/sec)   p_kst 1   p_cons 1.929310e-03   p_joint 1.173103e-02

Joint ci ratio: 4.637011e-02	ci left: 1.169020e-02	ci right 1.224681e-02	k: 7060	n:590000
Cons ci ratio: 1.162951e-01	ci left: 1.810233e-03	ci right 2.035380e-03	k: 1133	n:590000
KS ci ratio: 6.644045e-06	ci left: 9.999937e-01	ci right 1	k: 590000	n:590000
SLFN5   590000 perm   294 sec   (2007 perm/sec)   p_kst 1   p_cons 1.920339e-03   p_joint 1.196610e-02

Joint ci ratio: 4.673443e-02	ci left: 1.131906e-02	ci right 1.186234e-02	k: 6953	n:600000
Cons ci ratio: 1.151330e-01	ci left: 1.817287e-03	ci right 2.040899e-03	k: 1156	n:600000
KS ci ratio: 6.533312e-06	ci left: 9.999939e-01	ci right 1	k: 600000	n:600000
SLFN5   600000 perm   302 sec   (1989 perm/sec)   p_kst 1   p_cons 1.926667e-03   p_joint 1.158833e-02

Joint ci ratio: 4.655978e-02	ci left: 1.121936e-02	ci right 1.175579e-02	k: 7006	n:610000
Cons ci ratio: 1.140535e-01	ci left: 1.822527e-03	ci right 2.044541e-03	k: 1178	n:610000
KS ci ratio: 6.426208e-06	ci left: 9.999940e-01	ci right 1	k: 610000	n:610000
SLFN5   610000 perm   310 sec   (1969 perm/sec)   p_kst 1   p_cons 1.931148e-03   p_joint 1.148525e-02

Joint ci ratio: 4.631409e-02	ci left: 1.115796e-02	ci right 1.168856e-02	k: 7081	n:620000
Cons ci ratio: 1.130038e-01	ci left: 1.827608e-03	ci right 2.048055e-03	k: 1200	n:620000
KS ci ratio: 6.322560e-06	ci left: 9.999941e-01	ci right 1	k: 620000	n:620000
SLFN5   620000 perm   318 sec   (1952 perm/sec)   p_kst 1   p_cons 1.935484e-03   p_joint 1.142097e-02

Joint ci ratio: 4.680195e-02	ci left: 1.075488e-02	ci right 1.127185e-02	k: 6937	n:630000
Cons ci ratio: 1.118910e-01	ci left: 1.835623e-03	ci right 2.054712e-03	k: 1224	n:630000
KS ci ratio: 6.222202e-06	ci left: 9.999941e-01	ci right 1	k: 630000	n:630000
SLFN5   630000 perm   326 sec   (1935 perm/sec)   p_kst 1   p_cons 1.942857e-03   p_joint 1.101111e-02

Joint ci ratio: 4.648868e-02	ci left: 1.073200e-02	ci right 1.124432e-02	k: 7031	n:640000
Cons ci ratio: 1.110780e-01	ci left: 1.834282e-03	ci right 2.051516e-03	k: 1242	n:640000
KS ci ratio: 6.124981e-06	ci left: 9.999942e-01	ci right 1	k: 640000	n:640000
SLFN5   640000 perm   334 sec   (1918 perm/sec)   p_kst 1   p_cons 1.940625e-03   p_joint 1.098594e-02

Joint ci ratio: 4.741464e-02	ci left: 1.015935e-02	ci right 1.065426e-02	k: 6763	n:650000
Cons ci ratio: 1.100641e-01	ci left: 1.840469e-03	ci right 2.056317e-03	k: 1265	n:650000
KS ci ratio: 6.030751e-06	ci left: 9.999943e-01	ci right 1	k: 650000	n:650000
SLFN5   650000 perm   342 sec   (1902 perm/sec)   p_kst 1   p_cons 1.946154e-03   p_joint 1.040462e-02

Joint ci ratio: 4.651657e-02	ci left: 1.039776e-02	ci right 1.089443e-02	k: 7025	n:660000
Cons ci ratio: 1.089927e-01	ci left: 1.849424e-03	ci right 2.064076e-03	k: 1290	n:660000
KS ci ratio: 5.939376e-06	ci left: 9.999944e-01	ci right 1	k: 660000	n:660000
SLFN5   660000 perm   350 sec   (1886 perm/sec)   p_kst 1   p_cons 1.954545e-03   p_joint 1.064394e-02

Joint ci ratio: 4.631423e-02	ci left: 1.033402e-02	ci right 1.082545e-02	k: 7087	n:670000
Cons ci ratio: 1.081995e-01	ci left: 1.849409e-03	ci right 2.062397e-03	k: 1309	n:670000
KS ci ratio: 5.850729e-06	ci left: 9.999945e-01	ci right 1	k: 670000	n:670000
SLFN5   670000 perm   358 sec   (1871 perm/sec)   p_kst 1   p_cons 1.953731e-03   p_joint 1.057761e-02

Joint ci ratio: 4.620929e-02	ci left: 1.023001e-02	ci right 1.071535e-02	k: 7120	n:680000
Cons ci ratio: 1.074233e-01	ci left: 1.849399e-03	ci right 2.060762e-03	k: 1328	n:680000
KS ci ratio: 5.764689e-06	ci left: 9.999946e-01	ci right 1	k: 680000	n:680000
SLFN5   680000 perm   367 sec   (1853 perm/sec)   p_kst 1   p_cons 1.952941e-03   p_joint 1.047059e-02

Joint ci ratio: 4.398559e-02	ci left: 1.112934e-02	ci right 1.163130e-02	k: 7851	n:690000
Cons ci ratio: 1.066240e-01	ci left: 1.850806e-03	ci right 2.060657e-03	k: 1348	n:690000
KS ci ratio: 5.681143e-06	ci left: 9.999947e-01	ci right 1	k: 690000	n:690000
SLFN5   690000 perm   375 sec   (1838 perm/sec)   p_kst 1   p_cons 1.953623e-03   p_joint 1.137826e-02

Joint ci ratio: 4.456680e-02	ci left: 1.068774e-02	ci right 1.117632e-02	k: 7651	n:700000
Cons ci ratio: 1.059586e-01	ci left: 1.848006e-03	ci right 2.056150e-03	k: 1365	n:700000
KS ci ratio: 5.599984e-06	ci left: 9.999947e-01	ci right 1	k: 700000	n:700000
SLFN5   700000 perm   384 sec   (1824 perm/sec)   p_kst 1   p_cons 1.950000e-03   p_joint 1.093000e-02

Joint ci ratio: 4.531548e-02	ci left: 1.019317e-02	ci right 1.066717e-02	k: 7404	n:710000
Cons ci ratio: 1.051913e-01	ci left: 1.849403e-03	ci right 2.056103e-03	k: 1385	n:710000
KS ci ratio: 5.521111e-06	ci left: 9.999948e-01	ci right 1	k: 710000	n:710000
SLFN5   710000 perm   392 sec   (1810 perm/sec)   p_kst 1   p_cons 1.950704e-03   p_joint 1.042817e-02

Joint ci ratio: 4.534046e-02	ci left: 1.004197e-02	ci right 1.050920e-02	k: 7397	n:720000
Cons ci ratio: 1.043661e-01	ci left: 1.853472e-03	ci right 2.058902e-03	k: 1407	n:720000
KS ci ratio: 5.444429e-06	ci left: 9.999949e-01	ci right 1	k: 720000	n:720000
SLFN5   720000 perm   401 sec   (1795 perm/sec)   p_kst 1   p_cons 1.954167e-03   p_joint 1.027361e-02

Joint ci ratio: 4.498568e-02	ci left: 1.006288e-02	ci right 1.052732e-02	k: 7514	n:730000
Cons ci ratio: 1.035963e-01	ci left: 1.856101e-03	ci right 2.060212e-03	k: 1428	n:730000
KS ci ratio: 5.369848e-06	ci left: 9.999949e-01	ci right 1	k: 730000	n:730000
SLFN5   730000 perm   410 sec   (1781 perm/sec)   p_kst 1   p_cons 1.956164e-03   p_joint 1.029315e-02

Joint ci ratio: 4.378062e-02	ci left: 1.048287e-02	ci right 1.095341e-02	k: 7930	n:740000
Cons ci ratio: 1.027368e-01	ci left: 1.862614e-03	ci right 2.065640e-03	k: 1452	n:740000
KS ci ratio: 5.297283e-06	ci left: 9.999950e-01	ci right 1	k: 740000	n:740000
SLFN5   740000 perm   419 sec   (1767 perm/sec)   p_kst 1   p_cons 1.962162e-03   p_joint 1.071622e-02

Joint ci ratio: 4.351015e-02	ci left: 1.047365e-02	ci right 1.094081e-02	k: 8029	n:750000
Cons ci ratio: 1.022458e-01	ci left: 1.855967e-03	ci right 2.057244e-03	k: 1466	n:750000
KS ci ratio: 5.226653e-06	ci left: 9.999951e-01	ci right 1	k: 750000	n:750000
SLFN5   750000 perm   428 sec   (1753 perm/sec)   p_kst 1   p_cons 1.954667e-03   p_joint 1.070533e-02

Joint ci ratio: 4.339053e-02	ci left: 1.039440e-02	ci right 1.085671e-02	k: 8074	n:760000
Cons ci ratio: 1.015559e-01	ci left: 1.857192e-03	ci right 2.057161e-03	k: 1486	n:760000
KS ci ratio: 5.157881e-06	ci left: 9.999951e-01	ci right 1	k: 760000	n:760000
SLFN5   760000 perm   437 sec   (1740 perm/sec)   p_kst 1   p_cons 1.955263e-03   p_joint 1.062368e-02

Joint ci ratio: 4.137224e-02	ci left: 1.128618e-02	ci right 1.176426e-02	k: 8873	n:770000
Cons ci ratio: 1.009805e-01	ci left: 1.854591e-03	ci right 2.053082e-03	k: 1503	n:770000
KS ci ratio: 5.090896e-06	ci left: 9.999952e-01	ci right 1	k: 770000	n:770000
SLFN5   770000 perm   446 sec   (1726 perm/sec)   p_kst 1   p_cons 1.951948e-03   p_joint 1.152338e-02

Joint ci ratio: 3.971529e-02	ci left: 1.209084e-02	ci right 1.258202e-02	k: 9621	n:780000
Cons ci ratio: 1.001512e-01	ci left: 1.862060e-03	ci right 2.059617e-03	k: 1528	n:780000
KS ci ratio: 5.025628e-06	ci left: 9.999953e-01	ci right 1	k: 780000	n:780000
SLFN5   780000 perm   455 sec   (1713 perm/sec)   p_kst 1   p_cons 1.958974e-03   p_joint 1.233462e-02

Joint ci ratio: 3.959158e-02	ci left: 1.201423e-02	ci right 1.250075e-02	k: 9682	n:790000
Cons ci ratio: 9.927797e-02	ci left: 1.871815e-03	ci right 2.068574e-03	k: 1555	n:790000
KS ci ratio: 4.962013e-06	ci left: 9.999953e-01	ci right 1	k: 790000	n:790000
SLFN5   790000 perm   465 sec   (1700 perm/sec)   p_kst 1   p_cons 1.968354e-03   p_joint 1.225570e-02

Outputting figure to mutsig2_images.part000000000162/SLFN5.5_2692_790000_1_0.0019684_0.012256.png
                gene_name: SLFN5
               theta_stop: 0.099 
                    nperm: 790000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.0020 
      ci_cons_bounds_left: 0.0019 
     ci_cons_bounds_right: 0.0021 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 59 percent done.
SLMAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 2.844091e-02	ci left: 6.456895e-01	ci right 6.644201e-01	k: 6551	n:10000
SLMAP   10000 perm   2 sec   (5126 perm/sec)   p_kst 6.551000e-01   p_cons 2.895000e-01   p_joint 8.947000e-01

Outputting figure to mutsig2_images.part000000000162/SLMAP.5_2520_10000_0.6551_0.2895_0.8947.png
                gene_name: SLMAP
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 61 percent done.
SMARCAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.145448e-02	ci left: 7.611177e-01	ci right 7.777250e-01	k: 7695	n:10000
KS ci ratio: 2.016861e-02	ci left: 7.825926e-01	ci right 7.986378e-01	k: 7907	n:10000
SMARCAL1   10000 perm   2 sec   (4938 perm/sec)   p_kst 7.907000e-01   p_cons 7.695000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMARCAL1.5_2929_10000_0.7907_0.7695_1.png
                gene_name: SMARCAL1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SMG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
Cons ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
KS ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
SMG5   10000 perm   2 sec   (4923 perm/sec)   p_kst 3.145000e-01   p_cons 4.729000e-01   p_joint 6.485000e-01

Outputting figure to mutsig2_images.part000000000162/SMG5.5_3139_10000_0.3145_0.4729_0.6485.png
                gene_name: SMG5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 64 percent done.
SMG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
Cons ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
SMG7   10000 perm   2 sec   (4644 perm/sec)   p_kst 3.429000e-01   p_cons 4.996000e-01   p_joint 4.935000e-01

Outputting figure to mutsig2_images.part000000000162/SMG7.5_3885_10000_0.3429_0.4996_0.4935.png
                gene_name: SMG7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 65 percent done.
SMO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
SMO   10000 perm   2 sec   (5289 perm/sec)   p_kst 6.400000e-02   p_cons 2.492000e-01   p_joint 7.590000e-02

Joint ci ratio: 7.013243e-02	ci left: 1.303416e-01	ci right 1.398648e-01	k: 2701	n:20000
Cons ci ratio: 4.749664e-02	ci left: 2.479783e-01	ci right 2.600933e-01	k: 5080	n:20000
KS ci ratio: 1.056925e-01	ci left: 6.093909e-02	ci right 6.778824e-02	k: 1286	n:20000
SMO   20000 perm   4 sec   (4585 perm/sec)   p_kst 6.430000e-02   p_cons 2.540000e-01   p_joint 1.350500e-01

Joint ci ratio: 5.563141e-02	ci left: 1.380354e-01	ci right 1.459674e-01	k: 4259	n:30000
Cons ci ratio: 3.986963e-02	ci left: 2.388172e-01	ci right 2.485658e-01	k: 7310	n:30000
KS ci ratio: 8.398520e-02	ci left: 6.484973e-02	ci right 7.056767e-02	k: 2030	n:30000
SMO   30000 perm   7 sec   (4343 perm/sec)   p_kst 6.766667e-02   p_cons 2.436667e-01   p_joint 1.419667e-01

Outputting figure to mutsig2_images.part000000000162/SMO.5_2412_30000_0.067667_0.24367_0.14197.png
                gene_name: SMO
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 67 percent done.
SLCO2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
Cons ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
KS ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
SLCO2A1   10000 perm   2 sec   (5599 perm/sec)   p_kst 3.800000e-01   p_cons 2.580000e-02   p_joint 1.091000e-01

Joint ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
Cons ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
KS ci ratio: 3.535352e-02	ci left: 3.739135e-01	ci right 3.874212e-01	k: 7613	n:20000
SLCO2A1   20000 perm   4 sec   (4849 perm/sec)   p_kst 3.806500e-01   p_cons 2.640000e-02   p_joint 1.063000e-01

Joint ci ratio: 8.021497e-02	ci left: 7.076809e-02	ci right 7.671478e-02	k: 2211	n:30000
Cons ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
KS ci ratio: 2.881910e-02	ci left: 3.759318e-01	ci right 3.869578e-01	k: 11443	n:30000
SLCO2A1   30000 perm   7 sec   (4571 perm/sec)   p_kst 3.814333e-01   p_cons 2.773333e-02   p_joint 7.370000e-02

Joint ci ratio: 7.299413e-02	ci left: 6.479000e-02	ci right 6.972305e-02	k: 2689	n:40000
Cons ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
KS ci ratio: 2.492722e-02	ci left: 3.772596e-01	ci right 3.868075e-01	k: 15281	n:40000
SLCO2A1   40000 perm   9 sec   (4397 perm/sec)   p_kst 3.820250e-01   p_cons 2.735000e-02   p_joint 6.722500e-02

Joint ci ratio: 7.174582e-02	ci left: 5.431508e-02	ci right 5.837662e-02	k: 2816	n:50000
Cons ci ratio: 1.047207e-01	ci left: 2.583068e-02	ci right 2.870456e-02	k: 1362	n:50000
KS ci ratio: 2.258108e-02	ci left: 3.717915e-01	ci right 3.803029e-01	k: 18802	n:50000
SLCO2A1   50000 perm   12 sec   (4247 perm/sec)   p_kst 3.760400e-01   p_cons 2.724000e-02   p_joint 5.632000e-02

Joint ci ratio: 7.018844e-02	ci left: 4.767955e-02	ci right 5.116420e-02	k: 2964	n:60000
Cons ci ratio: 9.579549e-02	ci left: 2.584789e-02	ci right 2.846478e-02	k: 1628	n:60000
KS ci ratio: 2.057676e-02	ci left: 3.730035e-01	ci right 3.807751e-01	k: 22613	n:60000
SLCO2A1   60000 perm   14 sec   (4141 perm/sec)   p_kst 3.768833e-01   p_cons 2.713333e-02   p_joint 4.940000e-02

Outputting figure to mutsig2_images.part000000000162/SLCO2A1.4_1988_60000_0.37688_0.027133_0.0494.png
                gene_name: SLCO2A1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 68 percent done.
SLTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
Cons ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
KS ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
SLTM   10000 perm   2 sec   (4833 perm/sec)   p_kst 4.427000e-01   p_cons 7.158000e-01   p_joint 5.670000e-01

Outputting figure to mutsig2_images.part000000000162/SLTM.4_3189_10000_0.4427_0.7158_0.567.png
                gene_name: SLTM
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 70 percent done.
SMARCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
SMARCC1   10000 perm   2 sec   (4910 perm/sec)   p_kst 4.780000e-01   p_cons 1.129000e-01   p_joint 2.062000e-01

Joint ci ratio: 4.659290e-02	ci left: 2.552708e-01	ci right 2.674987e-01	k: 5227	n:20000
Cons ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
KS ci ratio: 2.898137e-02	ci left: 4.707560e-01	ci right 4.846504e-01	k: 9554	n:20000
SMARCC1   20000 perm   5 sec   (4306 perm/sec)   p_kst 4.777000e-01   p_cons 1.165500e-01   p_joint 2.613500e-01

Outputting figure to mutsig2_images.part000000000162/SMARCC1.4_3430_20000_0.4777_0.11655_0.26135.png
                gene_name: SMARCC1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 71 percent done.
SMC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
KS ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
SMC1A   10000 perm   2 sec   (4664 perm/sec)   p_kst 4.475000e-01   p_cons 1.400000e-02   p_joint 8.160000e-02

Joint ci ratio: 6.333366e-02	ci left: 1.556348e-01	ci right 1.658640e-01	k: 3214	n:20000
Cons ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
KS ci ratio: 3.067241e-02	ci left: 4.425887e-01	ci right 4.564260e-01	k: 8990	n:20000
SMC1A   20000 perm   5 sec   (4111 perm/sec)   p_kst 4.495000e-01   p_cons 1.350000e-02   p_joint 1.607000e-01

Joint ci ratio: 4.726731e-02	ci left: 1.820732e-01	ci right 1.909209e-01	k: 5594	n:30000
Cons ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
KS ci ratio: 2.508008e-02	ci left: 4.431603e-01	ci right 4.544496e-01	k: 13464	n:30000
SMC1A   30000 perm   8 sec   (3915 perm/sec)   p_kst 4.488000e-01   p_cons 1.320000e-02   p_joint 1.864667e-01

Joint ci ratio: 4.746956e-02	ci left: 1.421816e-01	ci right 1.491199e-01	k: 5825	n:40000
Cons ci ratio: 1.661474e-01	ci left: 1.258375e-02	ci right 1.488764e-02	k: 548	n:40000
KS ci ratio: 2.180059e-02	ci left: 4.420942e-01	ci right 4.518635e-01	k: 17879	n:40000
SMC1A   40000 perm   11 sec   (3760 perm/sec)   p_kst 4.469750e-01   p_cons 1.370000e-02   p_joint 1.456250e-01

Joint ci ratio: 4.296874e-02	ci left: 1.396252e-01	ci right 1.457763e-01	k: 7134	n:50000
Cons ci ratio: 1.515739e-01	ci left: 1.219871e-02	ci right 1.421839e-02	k: 659	n:50000
KS ci ratio: 1.950532e-02	ci left: 4.424554e-01	ci right 4.511907e-01	k: 22341	n:50000
SMC1A   50000 perm   14 sec   (3658 perm/sec)   p_kst 4.468200e-01   p_cons 1.318000e-02   p_joint 1.426800e-01

Joint ci ratio: 3.466092e-02	ci left: 1.726623e-01	ci right 1.787691e-01	k: 10542	n:60000
Cons ci ratio: 1.411008e-01	ci left: 1.180323e-02	ci right 1.361103e-02	k: 761	n:60000
KS ci ratio: 1.741392e-02	ci left: 4.538573e-01	ci right 4.618468e-01	k: 27471	n:60000
SMC1A   60000 perm   17 sec   (3580 perm/sec)   p_kst 4.578500e-01   p_cons 1.268333e-02   p_joint 1.757000e-01

Joint ci ratio: 3.746035e-02	ci left: 1.327316e-01	ci right 1.378129e-01	k: 9468	n:70000
Cons ci ratio: 1.299694e-01	ci left: 1.199419e-02	ci right 1.367512e-02	k: 897	n:70000
KS ci ratio: 1.610252e-02	ci left: 4.547606e-01	ci right 4.621571e-01	k: 32092	n:70000
SMC1A   70000 perm   20 sec   (3517 perm/sec)   p_kst 4.584571e-01   p_cons 1.281429e-02   p_joint 1.352571e-01

Joint ci ratio: 3.415855e-02	ci left: 1.389303e-01	ci right 1.437708e-01	k: 11307	n:80000
Cons ci ratio: 1.222581e-01	ci left: 1.191127e-02	ci right 1.347436e-02	k: 1014	n:80000
KS ci ratio: 1.504801e-02	ci left: 4.554797e-01	ci right 4.623982e-01	k: 36715	n:80000
SMC1A   80000 perm   23 sec   (3459 perm/sec)   p_kst 4.589375e-01   p_cons 1.267500e-02   p_joint 1.413375e-01

Joint ci ratio: 3.180072e-02	ci left: 1.421427e-01	ci right 1.467470e-01	k: 12999	n:90000
Cons ci ratio: 1.148530e-01	ci left: 1.204339e-02	ci right 1.352160e-02	k: 1149	n:90000
KS ci ratio: 1.416503e-02	ci left: 4.564620e-01	ci right 4.629850e-01	k: 41375	n:90000
SMC1A   90000 perm   26 sec   (3397 perm/sec)   p_kst 4.597222e-01   p_cons 1.276667e-02   p_joint 1.444333e-01

Joint ci ratio: 3.165921e-02	ci left: 1.308215e-01	ci right 1.350398e-01	k: 13292	n:100000
Cons ci ratio: 1.091227e-01	ci left: 1.204433e-02	ci right 1.344415e-02	k: 1273	n:100000
KS ci ratio: 1.347099e-02	ci left: 4.554180e-01	ci right 4.616045e-01	k: 45851	n:100000
SMC1A   100000 perm   30 sec   (3336 perm/sec)   p_kst 4.585100e-01   p_cons 1.273000e-02   p_joint 1.329200e-01

Joint ci ratio: 3.145527e-02	ci left: 1.217688e-01	ci right 1.256693e-01	k: 13608	n:110000
Cons ci ratio: 1.042481e-01	ci left: 1.202889e-02	ci right 1.336063e-02	k: 1395	n:110000
KS ci ratio: 1.285166e-02	ci left: 4.552703e-01	ci right 4.611682e-01	k: 50404	n:110000
SMC1A   110000 perm   34 sec   (3283 perm/sec)   p_kst 4.582182e-01   p_cons 1.268182e-02   p_joint 1.237091e-01

Joint ci ratio: 3.517606e-02	ci left: 9.213129e-02	ci right 9.543837e-02	k: 11253	n:120000
Cons ci ratio: 1.292381e-01	ci left: 7.116393e-03	ci right 8.107625e-03	k: 912	n:120000
KS ci ratio: 1.231284e-02	ci left: 4.550613e-01	ci right 4.607074e-01	k: 54946	n:120000
SMC1A   120000 perm   37 sec   (3235 perm/sec)   p_kst 4.578833e-01   p_cons 7.600000e-03   p_joint 9.377500e-02

Joint ci ratio: 3.317487e-02	ci left: 9.537343e-02	ci right 9.859841e-02	k: 12607	n:130000
Cons ci ratio: 1.239210e-01	ci left: 7.164892e-03	ci right 8.118805e-03	k: 992	n:130000
KS ci ratio: 1.183308e-02	ci left: 4.550350e-01	ci right 4.604592e-01	k: 59507	n:130000
SMC1A   130000 perm   41 sec   (3188 perm/sec)   p_kst 4.577462e-01   p_cons 7.630769e-03   p_joint 9.697692e-02

Joint ci ratio: 3.213989e-02	ci left: 9.450422e-02	ci right 9.759825e-02	k: 13446	n:140000
Cons ci ratio: 1.201161e-01	ci left: 7.096290e-03	ci right 8.009998e-03	k: 1056	n:140000
KS ci ratio: 1.139617e-02	ci left: 4.554160e-01	ci right 4.606429e-01	k: 64124	n:140000
SMC1A   140000 perm   45 sec   (3144 perm/sec)   p_kst 4.580286e-01   p_cons 7.542857e-03   p_joint 9.604286e-02

Joint ci ratio: 3.076216e-02	ci left: 9.617543e-02	ci right 9.918681e-02	k: 14651	n:150000
Cons ci ratio: 1.160691e-01	ci left: 7.108438e-03	ci right 7.990757e-03	k: 1131	n:150000
KS ci ratio: 1.101497e-02	ci left: 4.552696e-01	ci right 4.603187e-01	k: 68669	n:150000
SMC1A   150000 perm   48 sec   (3100 perm/sec)   p_kst 4.577933e-01   p_cons 7.540000e-03   p_joint 9.767333e-02

Joint ci ratio: 3.040231e-02	ci left: 9.269224e-02	ci right 9.555998e-02	k: 15059	n:160000
Cons ci ratio: 1.122648e-01	ci left: 7.137747e-03	ci right 7.992743e-03	k: 1209	n:160000
KS ci ratio: 1.065527e-02	ci left: 4.558125e-01	ci right 4.607015e-01	k: 73321	n:160000
SMC1A   160000 perm   52 sec   (3052 perm/sec)   p_kst 4.582562e-01   p_cons 7.556250e-03   p_joint 9.411875e-02

Joint ci ratio: 2.885137e-02	ci left: 9.653800e-02	ci right 9.936984e-02	k: 16651	n:170000
Cons ci ratio: 1.085995e-01	ci left: 7.192641e-03	ci right 8.024283e-03	k: 1292	n:170000
KS ci ratio: 1.033745e-02	ci left: 4.558705e-01	ci right 4.606133e-01	k: 77901	n:170000
SMC1A   170000 perm   57 sec   (3004 perm/sec)   p_kst 4.582412e-01   p_cons 7.600000e-03   p_joint 9.794706e-02

Joint ci ratio: 2.805308e-02	ci left: 9.648667e-02	ci right 9.923741e-02	k: 17614	n:180000
Cons ci ratio: 1.046597e-01	ci left: 7.328410e-03	ci right 8.143120e-03	k: 1391	n:180000
KS ci ratio: 1.005254e-02	ci left: 4.556240e-01	ci right 4.602329e-01	k: 82427	n:180000
SMC1A   180000 perm   61 sec   (2963 perm/sec)   p_kst 4.579278e-01   p_cons 7.727778e-03   p_joint 9.785556e-02

Joint ci ratio: 2.775774e-02	ci left: 9.367466e-02	ci right 9.631666e-02	k: 18048	n:190000
Cons ci ratio: 1.022665e-01	ci left: 7.281075e-03	ci right 8.070900e-03	k: 1457	n:190000
KS ci ratio: 9.792554e-03	ci left: 4.552737e-01	ci right 4.597592e-01	k: 86928	n:190000
SMC1A   190000 perm   65 sec   (2923 perm/sec)   p_kst 4.575158e-01   p_cons 7.668421e-03   p_joint 9.498947e-02

Joint ci ratio: 2.661743e-02	ci left: 9.653133e-02	ci right 9.914034e-02	k: 19566	n:200000
Cons ci ratio: 9.953786e-02	ci left: 7.311807e-03	ci right 8.082565e-03	k: 1538	n:200000
KS ci ratio: 9.539238e-03	ci left: 4.556096e-01	ci right 4.599816e-01	k: 91559	n:200000
SMC1A   200000 perm   69 sec   (2884 perm/sec)   p_kst 4.577950e-01   p_cons 7.690000e-03   p_joint 9.783000e-02

Outputting figure to mutsig2_images.part000000000162/SMC1A.4_3802_200000_0.4578_0.00769_0.09783.png
                gene_name: SMC1A
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0077 
      ci_cons_bounds_left: 0.0073 
     ci_cons_bounds_right: 0.0081 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.099 

Current progress: 73 percent done.
SMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
Cons ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
SMC5   10000 perm   2 sec   (4607 perm/sec)   p_kst 2.641000e-01   p_cons 2.250000e-02   p_joint 5.330000e-02

Joint ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
Cons ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
KS ci ratio: 4.626338e-02	ci left: 2.579998e-01	ci right 2.702688e-01	k: 5282	n:20000
SMC5   20000 perm   5 sec   (4104 perm/sec)   p_kst 2.641000e-01   p_cons 2.240000e-02   p_joint 5.310000e-02

Joint ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
Cons ci ratio: 1.523175e-01	ci left: 1.995267e-02	ci right 2.327421e-02	k: 647	n:30000
KS ci ratio: 3.789908e-02	ci left: 2.578589e-01	ci right 2.678537e-01	k: 7885	n:30000
SMC5   30000 perm   8 sec   (3923 perm/sec)   p_kst 2.628333e-01   p_cons 2.156667e-02   p_joint 6.040000e-02

Joint ci ratio: 1.045915e-01	ci left: 3.214791e-02	ci right 3.572017e-02	k: 1356	n:40000
Cons ci ratio: 1.330170e-01	ci left: 1.983485e-02	ci right 2.268524e-02	k: 849	n:40000
KS ci ratio: 3.273642e-02	ci left: 2.595358e-01	ci right 2.681985e-01	k: 10554	n:40000
SMC5   40000 perm   10 sec   (3812 perm/sec)   p_kst 2.638500e-01   p_cons 2.122500e-02   p_joint 3.390000e-02

Joint ci ratio: 7.743020e-02	ci left: 4.686888e-02	ci right 5.066373e-02	k: 2437	n:50000
Cons ci ratio: 1.173209e-01	ci left: 2.055726e-02	ci right 2.313867e-02	k: 1091	n:50000
KS ci ratio: 2.930564e-02	ci left: 2.596624e-01	ci right 2.674051e-01	k: 13176	n:50000
SMC5   50000 perm   13 sec   (3724 perm/sec)   p_kst 2.635200e-01   p_cons 2.182000e-02   p_joint 4.874000e-02

Joint ci ratio: 6.798564e-02	ci left: 5.071234e-02	ci right 5.429776e-02	k: 3149	n:60000
Cons ci ratio: 1.070323e-01	ci left: 2.069507e-02	ci right 2.305150e-02	k: 1311	n:60000
KS ci ratio: 2.680337e-02	ci left: 2.592647e-01	ci right 2.663249e-01	k: 15767	n:60000
SMC5   60000 perm   16 sec   (3643 perm/sec)   p_kst 2.627833e-01   p_cons 2.185000e-02   p_joint 5.248333e-02

Joint ci ratio: 5.739656e-02	ci left: 6.067555e-02	ci right 6.427510e-02	k: 4372	n:70000
Cons ci ratio: 9.852392e-02	ci left: 2.102366e-02	ci right 2.321620e-02	k: 1547	n:70000
KS ci ratio: 2.475851e-02	ci left: 2.604100e-01	ci right 2.669524e-01	k: 18457	n:70000
SMC5   70000 perm   20 sec   (3577 perm/sec)   p_kst 2.636714e-01   p_cons 2.210000e-02   p_joint 6.245714e-02

Outputting figure to mutsig2_images.part000000000162/SMC5.4_3406_70000_0.26367_0.0221_0.062457.png
                gene_name: SMC5
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 74 percent done.
SLC9A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
Cons ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
SLC9A5   10000 perm   2 sec   (5848 perm/sec)   p_kst 7.340000e-02   p_cons 2.998000e-01   p_joint 9.160000e-02

Joint ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
Cons ci ratio: 4.227023e-02	ci left: 2.942994e-01	ci right 3.070586e-01	k: 6013	n:20000
KS ci ratio: 9.616914e-02	ci left: 7.299974e-02	ci right 8.042388e-02	k: 1533	n:20000
SLC9A5   20000 perm   4 sec   (4990 perm/sec)   p_kst 7.665000e-02   p_cons 3.006500e-01   p_joint 1.052500e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A5.3_2755_20000_0.07665_0.30065_0.10525.png
                gene_name: SLC9A5
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 76 percent done.
SLC9A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
KS ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
SLC9A8   10000 perm   2 sec   (5802 perm/sec)   p_kst 9.676000e-01   p_cons 1.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A8.3_1810_10000_0.9676_0.1986_1.png
                gene_name: SLC9A8
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SLCO4C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
SLCO4C1   10000 perm   2 sec   (5585 perm/sec)   p_kst 2.230000e-01   p_cons 2.670000e-01   p_joint 4.501000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO4C1.3_2227_10000_0.223_0.267_0.4501.png
                gene_name: SLCO4C1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 79 percent done.
SLFN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
Cons ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
KS ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
SLFN12   10000 perm   2 sec   (5993 perm/sec)   p_kst 1.736000e-01   p_cons 6.383000e-01   p_joint 3.170000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN12.3_1749_10000_0.1736_0.6383_0.317.png
                gene_name: SLFN12
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 80 percent done.
SLFN12L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
KS ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
SLFN12L   10000 perm   2 sec   (5869 perm/sec)   p_kst 4.401000e-01   p_cons 5.417000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN12L.3_1870_10000_0.4401_0.5417_0.5634.png
                gene_name: SLFN12L
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 82 percent done.
SLU7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
SLU7   10000 perm   2 sec   (6026 perm/sec)   p_kst 4.398000e-01   p_cons 4.180000e-02   p_joint 1.704000e-01

Joint ci ratio: 5.329583e-02	ci left: 2.071942e-01	ci right 2.185894e-01	k: 4257	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 3.146870e-02	ci left: 4.299606e-01	ci right 4.437578e-01	k: 8737	n:20000
SLU7   20000 perm   4 sec   (5171 perm/sec)   p_kst 4.368500e-01   p_cons 4.160000e-02   p_joint 2.128500e-01

Joint ci ratio: 4.396236e-02	ci left: 2.048736e-01	ci right 2.141161e-01	k: 6284	n:30000
Cons ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
KS ci ratio: 2.574625e-02	ci left: 4.302452e-01	ci right 4.415005e-01	k: 13076	n:30000
SLU7   30000 perm   6 sec   (4884 perm/sec)   p_kst 4.358667e-01   p_cons 4.183333e-02   p_joint 2.094667e-01

Joint ci ratio: 3.704031e-02	ci left: 2.146820e-01	ci right 2.228089e-01	k: 8749	n:40000
Cons ci ratio: 9.252026e-02	ci left: 4.095944e-02	ci right 4.495726e-02	k: 1717	n:40000
KS ci ratio: 2.140803e-02	ci left: 4.510850e-01	ci right 4.608714e-01	k: 18239	n:40000
SLU7   40000 perm   9 sec   (4691 perm/sec)   p_kst 4.559750e-01   p_cons 4.292500e-02   p_joint 2.187250e-01

Outputting figure to mutsig2_images.part000000000162/SLU7.3_1821_40000_0.45598_0.042925_0.21873.png
                gene_name: SLU7
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 83 percent done.
SMAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
KS ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
SMAD1   10000 perm   2 sec   (6113 perm/sec)   p_kst 3.705000e-01   p_cons 3.142000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000162/SMAD1.3_1422_10000_0.3705_0.3142_0.3838.png
                gene_name: SMAD1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 85 percent done.
SMAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
SMAD3   10000 perm   1 sec   (6771 perm/sec)   p_kst 9.900000e-03   p_cons 3.941000e-01   p_joint 1.100000e-02

Joint ci ratio: 3.002544e-01	ci left: 7.182016e-03	ci right 9.763947e-03	k: 168	n:20000
Cons ci ratio: 3.456083e-02	ci left: 3.846271e-01	ci right 3.982045e-01	k: 7828	n:20000
KS ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
SMAD3   20000 perm   4 sec   (5690 perm/sec)   p_kst 8.500000e-03   p_cons 3.914000e-01   p_joint 8.400000e-03

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 2.746248e-02	ci left: 3.988725e-01	ci right 4.100127e-01	k: 12133	n:30000
KS ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
SMAD3   30000 perm   6 sec   (5331 perm/sec)   p_kst 8.600000e-03   p_cons 4.044333e-01   p_joint 9.700000e-03

Joint ci ratio: 1.560764e-01	ci left: 1.431219e-02	ci right 1.675887e-02	k: 620	n:40000
Cons ci ratio: 2.438050e-02	ci left: 3.877600e-01	ci right 3.973556e-01	k: 15702	n:40000
KS ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
SMAD3   40000 perm   8 sec   (5095 perm/sec)   p_kst 8.800000e-03   p_cons 3.925500e-01   p_joint 1.550000e-02

Joint ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
Cons ci ratio: 2.178989e-02	ci left: 3.886354e-01	ci right 3.972170e-01	k: 19646	n:50000
KS ci ratio: 1.864808e-01	ci left: 7.942767e-03	ci right 9.595025e-03	k: 437	n:50000
SMAD3   50000 perm   10 sec   (4932 perm/sec)   p_kst 8.740000e-03   p_cons 3.929200e-01   p_joint 1.260000e-02

Joint ci ratio: 1.271939e-01	ci left: 1.459130e-02	ci right 1.658929e-02	k: 934	n:60000
Cons ci ratio: 1.985900e-02	ci left: 3.897876e-01	ci right 3.976227e-01	k: 23622	n:60000
KS ci ratio: 1.714884e-01	ci left: 7.892636e-03	ci right 9.388808e-03	k: 517	n:60000
SMAD3   60000 perm   13 sec   (4787 perm/sec)   p_kst 8.616667e-03   p_cons 3.937000e-01   p_joint 1.556667e-02

Joint ci ratio: 1.314604e-01	ci left: 1.171771e-02	ci right 1.338020e-02	k: 877	n:70000
Cons ci ratio: 1.840081e-02	ci left: 3.896929e-01	ci right 3.969445e-01	k: 27532	n:70000
KS ci ratio: 1.584154e-01	ci left: 7.984152e-03	ci right 9.371322e-03	k: 606	n:70000
SMAD3   70000 perm   15 sec   (4675 perm/sec)   p_kst 8.657143e-03   p_cons 3.933143e-01   p_joint 1.252857e-02

Joint ci ratio: 1.255569e-01	ci left: 1.128119e-02	ci right 1.280451e-02	k: 962	n:80000
Cons ci ratio: 1.721837e-02	ci left: 3.897630e-01	ci right 3.965448e-01	k: 31452	n:80000
KS ci ratio: 1.491320e-01	ci left: 7.923621e-03	ci right 9.212399e-03	k: 684	n:80000
SMAD3   80000 perm   18 sec   (4569 perm/sec)   p_kst 8.550000e-03   p_cons 3.931500e-01   p_joint 1.202500e-02

Joint ci ratio: 1.115117e-01	ci left: 1.278862e-02	ci right 1.430964e-02	k: 1218	n:90000
Cons ci ratio: 1.625468e-02	ci left: 3.893410e-01	ci right 3.957326e-01	k: 35328	n:90000
KS ci ratio: 1.409378e-01	ci left: 7.921283e-03	ci right 9.132937e-03	k: 766	n:90000
SMAD3   90000 perm   20 sec   (4466 perm/sec)   p_kst 8.511111e-03   p_cons 3.925333e-01   p_joint 1.353333e-02

Joint ci ratio: 1.057674e-01	ci left: 1.283283e-02	ci right 1.427559e-02	k: 1354	n:100000
Cons ci ratio: 1.540485e-02	ci left: 3.899909e-01	ci right 3.960553e-01	k: 39302	n:100000
KS ci ratio: 1.345215e-01	ci left: 7.853300e-03	ci right 8.995488e-03	k: 841	n:100000
SMAD3   100000 perm   23 sec   (4371 perm/sec)   p_kst 8.410000e-03   p_cons 3.930200e-01   p_joint 1.354000e-02

Joint ci ratio: 1.174916e-01	ci left: 9.429238e-03	ci right 1.061499e-02	k: 1101	n:110000
Cons ci ratio: 1.467069e-02	ci left: 3.906931e-01	ci right 3.964762e-01	k: 43294	n:110000
KS ci ratio: 1.280662e-01	ci left: 7.904317e-03	ci right 8.994565e-03	k: 928	n:110000
SMAD3   110000 perm   26 sec   (4286 perm/sec)   p_kst 8.436364e-03   p_cons 3.935818e-01   p_joint 1.000909e-02

Joint ci ratio: 1.153939e-01	ci left: 8.975061e-03	ci right 1.008217e-02	k: 1142	n:120000
Cons ci ratio: 1.405395e-02	ci left: 3.905513e-01	ci right 3.960872e-01	k: 47198	n:120000
KS ci ratio: 1.153939e-01	ci left: 8.975061e-03	ci right 1.008217e-02	k: 1142	n:120000
SMAD3   120000 perm   29 sec   (4203 perm/sec)   p_kst 9.516667e-03   p_cons 3.933167e-01   p_joint 9.516667e-03

Joint ci ratio: 1.104288e-01	ci left: 9.069582e-03	ci right 1.013708e-02	k: 1247	n:130000
Cons ci ratio: 1.350591e-02	ci left: 3.905433e-01	ci right 3.958615e-01	k: 51116	n:130000
KS ci ratio: 1.104288e-01	ci left: 9.069582e-03	ci right 1.013708e-02	k: 1247	n:130000
SMAD3   130000 perm   32 sec   (4123 perm/sec)   p_kst 9.592308e-03   p_cons 3.932000e-01   p_joint 9.592308e-03

Joint ci ratio: 1.060936e-01	ci left: 9.144519e-03	ci right 1.017594e-02	k: 1351	n:140000
Cons ci ratio: 1.302146e-02	ci left: 3.903903e-01	ci right 3.955141e-01	k: 55013	n:140000
KS ci ratio: 1.060936e-01	ci left: 9.144519e-03	ci right 1.017594e-02	k: 1351	n:140000
SMAD3   140000 perm   35 sec   (4046 perm/sec)   p_kst 9.650000e-03   p_cons 3.929500e-01   p_joint 9.650000e-03

Joint ci ratio: 1.029482e-01	ci left: 9.080230e-03	ci right 1.007220e-02	k: 1435	n:150000
Cons ci ratio: 1.258917e-02	ci left: 3.901275e-01	ci right 3.950766e-01	k: 58890	n:150000
KS ci ratio: 1.029482e-01	ci left: 9.080230e-03	ci right 1.007220e-02	k: 1435	n:150000
SMAD3   150000 perm   38 sec   (3963 perm/sec)   p_kst 9.566667e-03   p_cons 3.926000e-01   p_joint 9.566667e-03

Joint ci ratio: 9.990108e-02	ci left: 9.054850e-03	ci right 1.001305e-02	k: 1524	n:160000
Cons ci ratio: 1.188933e-02	ci left: 4.021437e-01	ci right 4.069597e-01	k: 64728	n:160000
KS ci ratio: 9.990108e-02	ci left: 9.054850e-03	ci right 1.001305e-02	k: 1524	n:160000
SMAD3   160000 perm   41 sec   (3894 perm/sec)   p_kst 9.525000e-03   p_cons 4.045500e-01   p_joint 9.525000e-03

Outputting figure to mutsig2_images.part000000000162/SMAD3.3_1392_160000_0.009525_0.40455_0.009525.png
                gene_name: SMAD3
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.0095 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.010 

Current progress: 86 percent done.
SMARCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
Cons ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
KS ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
SMARCA1   10000 perm   2 sec   (5167 perm/sec)   p_kst 2.804000e-01   p_cons 7.711000e-01   p_joint 4.040000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA1.3_3261_10000_0.2804_0.7711_0.404.png
                gene_name: SMARCA1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 88 percent done.
SMARCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010152e-02	ci left: 9.328874e-01	ci right 9.424556e-01	k: 9378	n:10000
Cons ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
KS ci ratio: 1.433436e-02	ci left: 8.756178e-01	ci right 8.883587e-01	k: 8821	n:10000
SMARCD1   10000 perm   2 sec   (6239 perm/sec)   p_kst 8.821000e-01   p_cons 6.019000e-01   p_joint 9.378000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCD1.3_1600_10000_0.8821_0.6019_0.9378.png
                gene_name: SMARCD1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 89 percent done.
SMCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 7.474606e-03	ci left: 9.612099e-01	ci right 9.685160e-01	k: 9650	n:10000
SMCR8   10000 perm   2 sec   (5354 perm/sec)   p_kst 9.650000e-01   p_cons 2.946000e-01   p_joint 7.241000e-01

Outputting figure to mutsig2_images.part000000000162/SMCR8.3_2822_10000_0.965_0.2946_0.7241.png
                gene_name: SMCR8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 91 percent done.
SMAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
SMAD2   10000 perm   2 sec   (6500 perm/sec)   p_kst 1.184000e-01   p_cons 3.998000e-01   p_joint 2.186000e-01

Joint ci ratio: 4.729076e-02	ci left: 2.496152e-01	ci right 2.617559e-01	k: 5113	n:20000
Cons ci ratio: 3.387433e-02	ci left: 3.941975e-01	ci right 4.078313e-01	k: 8020	n:20000
KS ci ratio: 7.486609e-02	ci left: 1.160187e-01	ci right 1.250920e-01	k: 2410	n:20000
SMAD2   20000 perm   4 sec   (5534 perm/sec)   p_kst 1.205000e-01   p_cons 4.010000e-01   p_joint 2.556500e-01

Outputting figure to mutsig2_images.part000000000162/SMAD2.2_1444_20000_0.1205_0.401_0.25565.png
                gene_name: SMAD2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 92 percent done.
SMAD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
KS ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
SMAD5   10000 perm   2 sec   (6105 perm/sec)   p_kst 5.578000e-01   p_cons 5.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMAD5.2_1421_10000_0.5578_0.5772_1.png
                gene_name: SMAD5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SMAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
SMAP2   10000 perm   2 sec   (6525 perm/sec)   p_kst 4.759000e-01   p_cons 1.029000e-01   p_joint 6.235000e-01

Joint ci ratio: 2.366364e-02	ci left: 5.715202e-01	ci right 5.852570e-01	k: 11568	n:20000
Cons ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
KS ci ratio: 2.932329e-02	ci left: 4.649110e-01	ci right 4.787972e-01	k: 9437	n:20000
SMAP2   20000 perm   4 sec   (5536 perm/sec)   p_kst 4.718500e-01   p_cons 1.020000e-01   p_joint 5.784000e-01

Outputting figure to mutsig2_images.part000000000162/SMAP2.2_1330_20000_0.47185_0.102_0.5784.png
                gene_name: SMAP2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 95 percent done.
SMARCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
Cons ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
KS ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
SMARCB1   10000 perm   2 sec   (6609 perm/sec)   p_kst 6.730000e-02   p_cons 4.249000e-01   p_joint 2.698000e-01

Joint ci ratio: 2.006932e-02	ci left: 6.494193e-01	ci right 6.626353e-01	k: 13121	n:20000
Cons ci ratio: 3.287964e-02	ci left: 4.085581e-01	ci right 4.222665e-01	k: 8308	n:20000
KS ci ratio: 1.013035e-01	ci left: 6.611102e-02	ci right 7.321471e-02	k: 1392	n:20000
SMARCB1   20000 perm   4 sec   (5625 perm/sec)   p_kst 6.960000e-02   p_cons 4.154000e-01   p_joint 6.560500e-01

Joint ci ratio: 3.133444e-02	ci left: 3.374277e-01	ci right 3.482027e-01	k: 10284	n:30000
Cons ci ratio: 2.674403e-02	ci left: 4.116783e-01	ci right 4.228711e-01	k: 12518	n:30000
KS ci ratio: 8.180295e-02	ci left: 6.818418e-02	ci right 7.403254e-02	k: 2132	n:30000
SMARCB1   30000 perm   6 sec   (5274 perm/sec)   p_kst 7.106667e-02   p_cons 4.172667e-01   p_joint 3.428000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCB1.2_1194_30000_0.071067_0.41727_0.3428.png
                gene_name: SMARCB1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 97 percent done.
SMARCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
Cons ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
KS ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
SMARCD3   10000 perm   2 sec   (6195 perm/sec)   p_kst 1.206000e-01   p_cons 3.036000e-01   p_joint 4.103000e-01

Joint ci ratio: 4.986518e-02	ci left: 2.301288e-01	ci right 2.419480e-01	k: 4720	n:20000
Cons ci ratio: 4.175332e-02	ci left: 2.994678e-01	ci right 3.122887e-01	k: 6117	n:20000
KS ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
SMARCD3   20000 perm   4 sec   (5312 perm/sec)   p_kst 1.228500e-01   p_cons 3.058500e-01   p_joint 2.360000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCD3.2_1547_20000_0.12285_0.30585_0.236.png
                gene_name: SMARCD3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
SMEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 4.165368e-02	ci left: 4.597784e-01	ci right 4.794394e-01	k: 4696	n:10000
SMEK2   10000 perm   2 sec   (5984 perm/sec)   p_kst 4.696000e-01   p_cons 2.157000e-01   p_joint 9.831000e-01

Outputting figure to mutsig2_images.part000000000162/SMEK2.2_2618_10000_0.4696_0.2157_0.9831.png
                gene_name: SMEK2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000162
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 162 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1427>
Subject: Job 4422498: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1427>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000163> was used as the working directory.
Started at Wed Oct 24 18:08:44 2012
Results reported at Wed Oct 24 18:29:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000163.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000163.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 163  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000163.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1386.49 sec.
    Max Memory :      5293 MB
    Max Swap   :      7692 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
163
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 163
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 163: processing genes 14657 - 14747
Calculating significance of each gene.
Using projection method.
14657	SMOC2	2.574818e-01
14658	SMOX	1
14659	SMPD1	9.264840e-01
14660	SMPD2	8.619631e-01
14661	SMPD3	1
14662	SMPD4	9.525652e-01
14663	SMPDL3A	7.250799e-01
14664	SMPDL3B	9.148749e-01
14665	SMPX	1
14666	SMR3A	1
14667	SMR3B	3.933829e-01
14668	SMS	7.647613e-01
14669	SMTN	9.852929e-01
14670	SMTNL1	1
14671	SMTNL2	5.021014e-01
14672	SMU1	1
14673	SMUG1	1
14674	SMURF1	9.235356e-01
14675	SMURF2	8.805636e-01
14676	SMYD1	1
14677	SMYD2	6.136613e-01
14678	SMYD3	2.629077e-01
14679	SMYD4	1
14680	SMYD5	1.556797e-01
14681	SNAI1	2.265509e-01
14682	SNAI2	7.661197e-02
14683	SNAI3	1
14684	SNAP23	7.119356e-01
14685	SNAP25	3.509147e-02
14686	SNAP29	1
14687	SNAP47	8.852160e-01
14688	SNAP91	1.180869e-01
14689	SNAPC1	3.095984e-01
14690	SNAPC2	1
14691	SNAPC3	7.568860e-01
14692	SNAPC4	9.987078e-01
14693	SNAPC5	1
14694	SNAPIN	1
14695	SNCA	5.977485e-02
14696	SNCAIP	7.781775e-01
14697	SNCB	5.394556e-01
14698	SNCG	1
14699	SND1	1
14700	SNED1	9.997271e-01
14701	SNF8	8.121893e-01
14702	SNHG3-RCC1	1
14703	SNIP1	1
14704	SNN	1
14705	SNPH	9.131813e-01
14706	SNRK	9.165263e-01
14707	SNRNP200	9.999778e-01
14708	SNRNP25	1
14709	SNRNP27	1
14710	SNRNP35	1
14711	SNRNP40	1.169850e-01
14712	SNRNP48	4.588830e-01
14713	SNRNP70	7.243742e-01
14714	SNRPA	7.293921e-01
14715	SNRPA1	4.621906e-01
14716	SNRPB	1
14717	SNRPB2	3.347816e-01
14718	SNRPC	1
14719	SNRPD1	2.122602e-01
14720	SNRPD2	1
14721	SNRPD3	1.014057e-01
14722	SNRPE	3.348077e-01
14723	SNRPF	1
14724	SNRPG	2.435222e-01
14725	SNRPN	3.800251e-01
14726	SNTA1	8.221874e-01
14727	SNTB1	1
14728	SNTB2	3.778940e-01
14729	SNTG1	4.697161e-03
14730	SNTG2	8.558557e-01
14731	SNTN	1
14732	SNUPN	8.351338e-01
14733	SNURF	4.268907e-01
14734	SNW1	9.738089e-01
14735	SNX1	7.458991e-01
14736	SNX10	4.737330e-01
14737	SNX11	1
14738	SNX12	2.162557e-01
14739	SNX13	7.770938e-01
14740	SNX14	3.595494e-01
14741	SNX15	4.707724e-01
14742	SNX16	1
14743	SNX17	1
14744	SNX18	3.104400e-01
14745	SNX19	9.676655e-01
14746	SNX2	6.588631e-01
14747	SNX20	6.127353e-01
Done

Running MutSig 2:
Scatter job 163: processing genes 14657 - 14747
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SNTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
SNTG1   10000 perm   3 sec   (3900 perm/sec)   p_kst 2.296000e-01   p_cons 3.460000e-01   p_joint 3.051000e-01

Outputting figure to mutsig2_images.part000000000163/SNTG1.24_1622_10000_0.2296_0.346_0.3051.png
                gene_name: SNTG1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
SNRNP200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
Cons ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
KS ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
SNRNP200   10000 perm   3 sec   (3243 perm/sec)   p_kst 8.658000e-01   p_cons 5.813000e-01   p_joint 9.285000e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP200.9_6591_10000_0.8658_0.5813_0.9285.png
                gene_name: SNRNP200
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 5 percent done.
SMYD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
Cons ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
KS ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
SMYD1   10000 perm   2 sec   (5276 perm/sec)   p_kst 2.877000e-01   p_cons 3.634000e-01   p_joint 3.816000e-01

Outputting figure to mutsig2_images.part000000000163/SMYD1.8_1513_10000_0.2877_0.3634_0.3816.png
                gene_name: SMYD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 8 percent done.
SNAP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
KS ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
SNAP91   10000 perm   2 sec   (4567 perm/sec)   p_kst 9.404000e-01   p_cons 8.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAP91.7_2832_10000_0.9404_0.8395_1.png
                gene_name: SNAP91
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SNTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
Cons ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
KS ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
SNTG2   10000 perm   2 sec   (4915 perm/sec)   p_kst 2.847000e-01   p_cons 7.045000e-01   p_joint 5.083000e-01

Outputting figure to mutsig2_images.part000000000163/SNTG2.7_1688_10000_0.2847_0.7045_0.5083.png
                gene_name: SNTG2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
SNX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
Cons ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
KS ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
SNX14   10000 perm   2 sec   (4519 perm/sec)   p_kst 4.702000e-01   p_cons 5.497000e-01   p_joint 5.608000e-01

Outputting figure to mutsig2_images.part000000000163/SNX14.7_2957_10000_0.4702_0.5497_0.5608.png
                gene_name: SNX14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 15 percent done.
SNTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
SNTB2   10000 perm   2 sec   (5346 perm/sec)   p_kst 7.400000e-02   p_cons 5.480000e-01   p_joint 1.446000e-01

Joint ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
Cons ci ratio: 2.526891e-02	ci left: 5.391687e-01	ci right 5.530179e-01	k: 10922	n:20000
KS ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
SNTB2   20000 perm   4 sec   (4860 perm/sec)   p_kst 7.545000e-02   p_cons 5.461000e-01   p_joint 1.232000e-01

Outputting figure to mutsig2_images.part000000000163/SNTB2.6_1651_20000_0.07545_0.5461_0.1232.png
                gene_name: SNTB2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 18 percent done.
SMYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
Cons ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
KS ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
SMYD5   10000 perm   2 sec   (5335 perm/sec)   p_kst 2.653000e-01   p_cons 4.531000e-01   p_joint 4.822000e-01

Outputting figure to mutsig2_images.part000000000163/SMYD5.5_1309_10000_0.2653_0.4531_0.4822.png
                gene_name: SMYD5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 20 percent done.
SND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 4.322499e-02	ci left: 4.414124e-01	ci right 4.610161e-01	k: 4512	n:10000
SND1   10000 perm   2 sec   (5167 perm/sec)   p_kst 4.512000e-01   p_cons 8.315000e-01   p_joint 6.830000e-01

Outputting figure to mutsig2_images.part000000000163/SND1.5_2829_10000_0.4512_0.8315_0.683.png
                gene_name: SND1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
SMOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
Cons ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
KS ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
SMOC2   10000 perm   2 sec   (5812 perm/sec)   p_kst 8.266000e-01   p_cons 3.062000e-01   p_joint 7.138000e-01

Outputting figure to mutsig2_images.part000000000163/SMOC2.4_1426_10000_0.8266_0.3062_0.7138.png
                gene_name: SMOC2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 25 percent done.
SMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
Cons ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
KS ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
SMTN   10000 perm   2 sec   (5094 perm/sec)   p_kst 4.992000e-01   p_cons 8.487000e-01   p_joint 8.140000e-01

Outputting figure to mutsig2_images.part000000000163/SMTN.4_2979_10000_0.4992_0.8487_0.814.png
                gene_name: SMTN
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 28 percent done.
SMYD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
KS ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
SMYD3   10000 perm   2 sec   (5822 perm/sec)   p_kst 8.430000e-01   p_cons 7.217000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMYD3.4_1335_10000_0.843_0.7217_1.png
                gene_name: SMYD3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
SNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
KS ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
SNAI2   10000 perm   2 sec   (6538 perm/sec)   p_kst 6.415000e-01   p_cons 9.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAI2.4_819_10000_0.6415_0.9861_1.png
                gene_name: SNAI2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
SNAP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
SNAP25   10000 perm   2 sec   (6280 perm/sec)   p_kst 1.050000e-02   p_cons 7.786000e-01   p_joint 1.980000e-02

Joint ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
Cons ci ratio: 1.466955e-02	ci left: 7.754046e-01	ci right 7.869136e-01	k: 15624	n:20000
KS ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
SNAP25   20000 perm   4 sec   (5506 perm/sec)   p_kst 1.030000e-02   p_cons 7.812000e-01   p_joint 1.475000e-02

Joint ci ratio: 1.786206e-01	ci left: 1.438741e-02	ci right 1.724081e-02	k: 473	n:30000
Cons ci ratio: 1.202197e-02	ci left: 7.752016e-01	ci right 7.846108e-01	k: 23398	n:30000
KS ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
SNAP25   30000 perm   6 sec   (5238 perm/sec)   p_kst 1.093333e-02   p_cons 7.799333e-01   p_joint 1.576667e-02

Joint ci ratio: 1.540725e-01	ci left: 1.469689e-02	ci right 1.717411e-02	k: 636	n:40000
Cons ci ratio: 1.045857e-02	ci left: 7.742721e-01	ci right 7.824374e-01	k: 31135	n:40000
KS ci ratio: 1.864896e-01	ci left: 9.905587e-03	ci right 1.196634e-02	k: 436	n:40000
SNAP25   40000 perm   8 sec   (5039 perm/sec)   p_kst 1.090000e-02   p_cons 7.783750e-01   p_joint 1.590000e-02

Joint ci ratio: 1.376534e-01	ci left: 1.486038e-02	ci right 1.707633e-02	k: 797	n:50000
Cons ci ratio: 9.345611e-03	ci left: 7.750352e-01	ci right 7.823324e-01	k: 38935	n:50000
KS ci ratio: 1.696913e-01	ci left: 9.663382e-03	ci right 1.147412e-02	k: 527	n:50000
SNAP25   50000 perm   10 sec   (4902 perm/sec)   p_kst 1.054000e-02   p_cons 7.787000e-01   p_joint 1.594000e-02

Joint ci ratio: 1.308680e-01	ci left: 1.376835e-02	ci right 1.571234e-02	k: 883	n:60000
Cons ci ratio: 8.527208e-03	ci left: 7.755242e-01	ci right 7.821822e-01	k: 46732	n:60000
KS ci ratio: 1.525632e-01	ci left: 1.005250e-02	ci right 1.172865e-02	k: 652	n:60000
SNAP25   60000 perm   13 sec   (4769 perm/sec)   p_kst 1.086667e-02   p_cons 7.788667e-01   p_joint 1.471667e-02

Joint ci ratio: 1.340348e-01	ci left: 1.126176e-02	ci right 1.289334e-02	k: 844	n:70000
Cons ci ratio: 7.887346e-03	ci left: 7.760942e-01	ci right 7.822540e-01	k: 54543	n:70000
KS ci ratio: 1.407644e-01	ci left: 1.018536e-02	ci right 1.174129e-02	k: 766	n:70000
SNAP25   70000 perm   15 sec   (4654 perm/sec)   p_kst 1.094286e-02   p_cons 7.791857e-01   p_joint 1.205714e-02

Joint ci ratio: 1.068765e-01	ci left: 1.565292e-02	ci right 1.743239e-02	k: 1322	n:80000
Cons ci ratio: 7.368784e-03	ci left: 7.767238e-01	ci right 7.824809e-01	k: 62369	n:80000
KS ci ratio: 1.308137e-01	ci left: 1.037342e-02	ci right 1.183736e-02	k: 887	n:80000
SNAP25   80000 perm   18 sec   (4533 perm/sec)   p_kst 1.108750e-02   p_cons 7.796125e-01   p_joint 1.652500e-02

Joint ci ratio: 1.191228e-01	ci left: 1.118021e-02	ci right 1.260707e-02	k: 1069	n:90000
Cons ci ratio: 6.948282e-03	ci left: 7.768439e-01	ci right 7.822715e-01	k: 70161	n:90000
KS ci ratio: 1.249227e-01	ci left: 1.014574e-02	ci right 1.150829e-02	k: 973	n:90000
SNAP25   90000 perm   20 sec   (4437 perm/sec)   p_kst 1.081111e-02   p_cons 7.795667e-01   p_joint 1.187778e-02

Joint ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
Cons ci ratio: 6.588777e-03	ci left: 7.771383e-01	ci right 7.822855e-01	k: 77972	n:100000
KS ci ratio: 1.175941e-01	ci left: 1.034333e-02	ci right 1.164526e-02	k: 1098	n:100000
SNAP25   100000 perm   23 sec   (4348 perm/sec)   p_kst 1.098000e-02   p_cons 7.797200e-01   p_joint 1.205000e-02

Joint ci ratio: 9.501959e-02	ci left: 1.451188e-02	ci right 1.596839e-02	k: 1675	n:110000
Cons ci ratio: 6.278195e-03	ci left: 7.774762e-01	ci right 7.823818e-01	k: 85793	n:110000
KS ci ratio: 1.157020e-01	ci left: 9.729400e-03	ci right 1.093299e-02	k: 1135	n:110000
SNAP25   110000 perm   26 sec   (4255 perm/sec)   p_kst 1.031818e-02   p_cons 7.799364e-01   p_joint 1.522727e-02

Joint ci ratio: 1.005111e-01	ci left: 1.188715e-02	ci right 1.315324e-02	k: 1501	n:120000
Cons ci ratio: 6.012572e-03	ci left: 7.774864e-01	ci right 7.821834e-01	k: 93581	n:120000
KS ci ratio: 1.110151e-01	ci left: 9.712126e-03	ci right 1.086172e-02	k: 1233	n:120000
SNAP25   120000 perm   29 sec   (4179 perm/sec)   p_kst 1.027500e-02   p_cons 7.798417e-01   p_joint 1.250833e-02

Joint ci ratio: 9.361647e-02	ci left: 1.268431e-02	ci right 1.393754e-02	k: 1729	n:130000
Cons ci ratio: 5.768463e-03	ci left: 7.780701e-01	ci right 7.825790e-01	k: 101443	n:130000
KS ci ratio: 1.037147e-01	ci left: 1.030518e-02	ci right 1.143987e-02	k: 1412	n:130000
SNAP25   130000 perm   32 sec   (4104 perm/sec)   p_kst 1.086154e-02   p_cons 7.803308e-01   p_joint 1.330000e-02

Joint ci ratio: 9.073268e-02	ci left: 1.255981e-02	ci right 1.376048e-02	k: 1841	n:140000
Cons ci ratio: 5.559012e-03	ci left: 7.781290e-01	ci right 7.824737e-01	k: 109243	n:140000
KS ci ratio: 1.003997e-01	ci left: 1.023033e-02	ci right 1.131865e-02	k: 1507	n:140000
SNAP25   140000 perm   35 sec   (4028 perm/sec)   p_kst 1.076429e-02   p_cons 7.803071e-01   p_joint 1.315000e-02

Joint ci ratio: 8.766898e-02	ci left: 1.257634e-02	ci right 1.373592e-02	k: 1972	n:150000
Cons ci ratio: 5.379607e-03	ci left: 7.776207e-01	ci right 7.818218e-01	k: 116959	n:150000
KS ci ratio: 9.695631e-02	ci left: 1.025705e-02	ci right 1.130866e-02	k: 1616	n:150000
SNAP25   150000 perm   38 sec   (3955 perm/sec)   p_kst 1.077333e-02   p_cons 7.797267e-01   p_joint 1.314667e-02

Outputting figure to mutsig2_images.part000000000163/SNAP25.4_771_150000_0.010773_0.77973_0.013147.png
                gene_name: SNAP25
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 35 percent done.
SNCAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
Cons ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
KS ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
SNCAIP   10000 perm   2 sec   (5415 perm/sec)   p_kst 2.087000e-01   p_cons 9.720000e-01   p_joint 5.062000e-01

Outputting figure to mutsig2_images.part000000000163/SNCAIP.4_2800_10000_0.2087_0.972_0.5062.png
                gene_name: SNCAIP
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
SNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
SNIP1   10000 perm   2 sec   (5885 perm/sec)   p_kst 7.463000e-01   p_cons 2.069000e-01   p_joint 5.630000e-01

Outputting figure to mutsig2_images.part000000000163/SNIP1.4_1207_10000_0.7463_0.2069_0.563.png
                gene_name: SNIP1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 40 percent done.
SNRNP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
KS ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
SNRNP40   10000 perm   2 sec   (6426 perm/sec)   p_kst 9.375000e-01   p_cons 8.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNRNP40.4_1114_10000_0.9375_0.8978_1.png
                gene_name: SNRNP40
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
SNRPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
SNRPN   10000 perm   2 sec   (6287 perm/sec)   p_kst 3.298000e-01   p_cons 3.428000e-01   p_joint 4.910000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPN.4_751_10000_0.3298_0.3428_0.491.png
                gene_name: SNRPN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 45 percent done.
SNX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
Cons ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
KS ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
SNX18   10000 perm   2 sec   (5296 perm/sec)   p_kst 5.440000e-02   p_cons 2.627000e-01   p_joint 8.080000e-02

Joint ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
Cons ci ratio: 4.685374e-02	ci left: 2.531374e-01	ci right 2.653327e-01	k: 5184	n:20000
KS ci ratio: 1.173992e-01	ci left: 4.969223e-02	ci right 5.593859e-02	k: 1055	n:20000
SNX18   20000 perm   4 sec   (4711 perm/sec)   p_kst 5.275000e-02   p_cons 2.592000e-01   p_joint 1.081500e-01

Joint ci ratio: 8.180295e-02	ci left: 6.818418e-02	ci right 7.403254e-02	k: 2132	n:30000
Cons ci ratio: 3.800695e-02	ci left: 2.567657e-01	ci right 2.667471e-01	k: 7852	n:30000
KS ci ratio: 9.637173e-02	ci left: 4.974238e-02	ci right 5.481144e-02	k: 1567	n:30000
SNX18   30000 perm   7 sec   (4498 perm/sec)   p_kst 5.223333e-02   p_cons 2.617333e-01   p_joint 7.106667e-02

Outputting figure to mutsig2_images.part000000000163/SNX18.4_2149_30000_0.052233_0.26173_0.071067.png
                gene_name: SNX18
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 48 percent done.
SNX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648870e-02	ci left: 8.425440e-01	ci right 8.566516e-01	k: 8497	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
SNX19   10000 perm   2 sec   (4998 perm/sec)   p_kst 8.140000e-01   p_cons 5.163000e-01   p_joint 8.497000e-01

Outputting figure to mutsig2_images.part000000000163/SNX19.4_3023_10000_0.814_0.5163_0.8497.png
                gene_name: SNX19
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 50 percent done.
SMURF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.454850e-02	ci left: 2.084612e-01	ci right 2.247043e-01	k: 2165	n:10000
Cons ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
SMURF1   10000 perm   2 sec   (5464 perm/sec)   p_kst 1.759000e-01   p_cons 6.077000e-01   p_joint 2.165000e-01

Outputting figure to mutsig2_images.part000000000163/SMURF1.3_2350_10000_0.1759_0.6077_0.2165.png
                gene_name: SMURF1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 52 percent done.
SNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
Cons ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
KS ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
SNAI1   10000 perm   1 sec   (6687 perm/sec)   p_kst 2.173000e-01   p_cons 2.339000e-01   p_joint 1.473000e-01

Outputting figure to mutsig2_images.part000000000163/SNAI1.3_807_10000_0.2173_0.2339_0.1473.png
                gene_name: SNAI1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 55 percent done.
SNAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
Cons ci ratio: 2.193778e-02	ci left: 7.530218e-01	ci right 7.698256e-01	k: 7615	n:10000
KS ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
SNAPC1   10000 perm   2 sec   (6180 perm/sec)   p_kst 9.800000e-02   p_cons 7.615000e-01   p_joint 2.550000e-01

Joint ci ratio: 4.296379e-02	ci left: 2.875422e-01	ci right 3.002178e-01	k: 5877	n:20000
Cons ci ratio: 1.555937e-02	ci left: 7.544218e-01	ci right 7.663024e-01	k: 15208	n:20000
KS ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
SNAPC1   20000 perm   4 sec   (5438 perm/sec)   p_kst 9.790000e-02   p_cons 7.604000e-01   p_joint 2.938500e-01

Outputting figure to mutsig2_images.part000000000163/SNAPC1.3_1147_20000_0.0979_0.7604_0.29385.png
                gene_name: SNAPC1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 57 percent done.
SNAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
SNAPC4   10000 perm   2 sec   (4635 perm/sec)   p_kst 1.731000e-01   p_cons 6.780000e-02   p_joint 1.094000e-01

Joint ci ratio: 9.576406e-02	ci left: 7.358645e-02	ci right 8.103699e-02	k: 1545	n:20000
Cons ci ratio: 1.032693e-01	ci left: 6.371945e-02	ci right 7.070702e-02	k: 1343	n:20000
KS ci ratio: 6.130053e-02	ci left: 1.645210e-01	ci right 1.749752e-01	k: 3394	n:20000
SNAPC4   20000 perm   5 sec   (4218 perm/sec)   p_kst 1.697000e-01   p_cons 6.715000e-02   p_joint 7.725000e-02

Joint ci ratio: 8.361048e-02	ci left: 6.540533e-02	ci right 7.114529e-02	k: 2047	n:30000
Cons ci ratio: 8.488528e-02	ci left: 6.354265e-02	ci right 6.920834e-02	k: 1990	n:30000
KS ci ratio: 4.967349e-02	ci left: 1.676129e-01	ci right 1.761841e-01	k: 5156	n:30000
SNAPC4   30000 perm   7 sec   (4045 perm/sec)   p_kst 1.718667e-01   p_cons 6.633333e-02   p_joint 6.823333e-02

Outputting figure to mutsig2_images.part000000000163/SNAPC4.3_4498_30000_0.17187_0.066333_0.068233.png
                gene_name: SNAPC4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.071 

Current progress: 60 percent done.
SNCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
SNCA   10000 perm   1 sec   (6965 perm/sec)   p_kst 3.855000e-01   p_cons 6.683000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000163/SNCA.3_443_10000_0.3855_0.6683_0.4533.png
                gene_name: SNCA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
SNRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
SNRK   10000 perm   2 sec   (5715 perm/sec)   p_kst 3.998000e-01   p_cons 4.618000e-01   p_joint 3.481000e-01

Outputting figure to mutsig2_images.part000000000163/SNRK.3_2318_10000_0.3998_0.4618_0.3481.png
                gene_name: SNRK
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 65 percent done.
SNX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
SNX13   10000 perm   2 sec   (5352 perm/sec)   p_kst 4.760000e-02   p_cons 2.759000e-01   p_joint 1.203000e-01

Joint ci ratio: 1.171652e-01	ci left: 4.988666e-02	ci right 5.614409e-02	k: 1059	n:20000
Cons ci ratio: 4.719158e-02	ci left: 2.504089e-01	ci right 2.625620e-01	k: 5129	n:20000
KS ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
SNX13   20000 perm   4 sec   (4790 perm/sec)   p_kst 4.750000e-02   p_cons 2.564500e-01   p_joint 5.295000e-02

Joint ci ratio: 1.065523e-01	ci left: 4.086211e-02	ci right 4.549355e-02	k: 1294	n:30000
Cons ci ratio: 3.864330e-02	ci left: 2.504394e-01	ci right 2.603413e-01	k: 7661	n:30000
KS ci ratio: 1.018720e-01	ci left: 4.463242e-02	ci right 4.945578e-02	k: 1410	n:30000
SNX13   30000 perm   7 sec   (4568 perm/sec)   p_kst 4.700000e-02   p_cons 2.553667e-01   p_joint 4.313333e-02

Joint ci ratio: 7.935203e-02	ci left: 5.521380e-02	ci right 5.980070e-02	k: 2299	n:40000
Cons ci ratio: 3.350797e-02	ci left: 2.506346e-01	ci right 2.592010e-01	k: 10196	n:40000
KS ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
SNX13   40000 perm   9 sec   (4408 perm/sec)   p_kst 4.670000e-02   p_cons 2.549000e-01   p_joint 5.747500e-02

Outputting figure to mutsig2_images.part000000000163/SNX13.3_2978_40000_0.0467_0.2549_0.057475.png
                gene_name: SNX13
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 68 percent done.
SMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
Cons ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
KS ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
SMPD1   10000 perm   2 sec   (6108 perm/sec)   p_kst 4.747000e-01   p_cons 9.091000e-01   p_joint 9.961000e-01

Outputting figure to mutsig2_images.part000000000163/SMPD1.2_1960_10000_0.4747_0.9091_0.9961.png
                gene_name: SMPD1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 70 percent done.
SMPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371419e-02	ci left: 8.847277e-01	ci right 8.970435e-01	k: 8910	n:10000
Cons ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
KS ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
SMPD4   10000 perm   2 sec   (5563 perm/sec)   p_kst 7.613000e-01   p_cons 7.123000e-01   p_joint 8.910000e-01

Outputting figure to mutsig2_images.part000000000163/SMPD4.2_2681_10000_0.7613_0.7123_0.891.png
                gene_name: SMPD4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 72 percent done.
SMTNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
KS ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
SMTNL2   10000 perm   2 sec   (6380 perm/sec)   p_kst 4.103000e-01   p_cons 7.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMTNL2.2_1418_10000_0.4103_0.7775_1.png
                gene_name: SMTNL2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SMURF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
Cons ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
KS ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
SMURF2   10000 perm   2 sec   (5729 perm/sec)   p_kst 2.059000e-01   p_cons 6.071000e-01   p_joint 6.771000e-01

Outputting figure to mutsig2_images.part000000000163/SMURF2.2_2323_10000_0.2059_0.6071_0.6771.png
                gene_name: SMURF2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 78 percent done.
SMYD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
Cons ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
KS ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
SMYD2   10000 perm   2 sec   (6518 perm/sec)   p_kst 9.688000e-01   p_cons 2.410000e-02   p_joint 9.008000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.745358e-01	ci left: 2.244966e-02	ci right 2.679005e-02	k: 491	n:20000
KS ci ratio: 4.890784e-03	ci left: 9.673857e-01	ci right 9.721764e-01	k: 19397	n:20000
SMYD2   20000 perm   4 sec   (5711 perm/sec)   p_kst 9.698500e-01   p_cons 2.455000e-02   p_joint 1

Joint ci ratio: 3.603865e-03	ci left: 9.734803e-01	ci right 9.770268e-01	k: 29259	n:30000
Cons ci ratio: 1.424101e-01	ci left: 2.287663e-02	ci right 2.641625e-02	k: 738	n:30000
KS ci ratio: 3.970694e-03	ci left: 9.681787e-01	ci right 9.720628e-01	k: 29105	n:30000
SMYD2   30000 perm   6 sec   (5396 perm/sec)   p_kst 9.701667e-01   p_cons 2.460000e-02   p_joint 9.753000e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.248553e-01	ci left: 2.254651e-02	ci right 2.557312e-02	k: 961	n:40000
KS ci ratio: 3.427404e-03	ci left: 9.686407e-01	ci right 9.719905e-01	k: 38814	n:40000
SMYD2   40000 perm   8 sec   (5200 perm/sec)   p_kst 9.703500e-01   p_cons 2.402500e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.127599e-01	ci left: 2.226771e-02	ci right 2.494799e-02	k: 1179	n:50000
KS ci ratio: 3.041297e-03	ci left: 9.692866e-01	ci right 9.722584e-01	k: 48540	n:50000
SMYD2   50000 perm   10 sec   (5035 perm/sec)   p_kst 9.708000e-01   p_cons 2.358000e-02   p_joint 1

Joint ci ratio: 2.357932e-02	ci left: 3.116327e-01	ci right 3.190851e-01	k: 18921	n:60000
Cons ci ratio: 1.030846e-01	ci left: 2.231889e-02	ci right 2.476083e-02	k: 1411	n:60000
KS ci ratio: 2.787570e-03	ci left: 9.691830e-01	ci right 9.719046e-01	k: 58234	n:60000
SMYD2   60000 perm   12 sec   (4887 perm/sec)   p_kst 9.705667e-01   p_cons 2.351667e-02   p_joint 3.153500e-01

Joint ci ratio: 6.584931e-02	ci left: 4.659679e-02	ci right 4.978366e-02	k: 3372	n:70000
Cons ci ratio: 9.616784e-02	ci left: 2.206957e-02	ci right 2.431305e-02	k: 1622	n:70000
KS ci ratio: 2.583705e-03	ci left: 9.692197e-01	ci right 9.717411e-01	k: 67935	n:70000
SMYD2   70000 perm   15 sec   (4763 perm/sec)   p_kst 9.705000e-01   p_cons 2.317143e-02   p_joint 4.817143e-02

Outputting figure to mutsig2_images.part000000000163/SMYD2.2_1350_70000_0.9705_0.023171_0.048171.png
                gene_name: SMYD2
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 80 percent done.
SNRNP48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
SNRNP48   10000 perm   2 sec   (6660 perm/sec)   p_kst 5.298000e-01   p_cons 1.627000e-01   p_joint 3.516000e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP48.2_1056_10000_0.5298_0.1627_0.3516.png
                gene_name: SNRNP48
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 82 percent done.
SNRPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
SNRPD3   10000 perm   1 sec   (7690 perm/sec)   p_kst 1.310000e-02   p_cons 5.275000e-01   p_joint 2.272000e-01

Joint ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
Cons ci ratio: 2.634530e-02	ci left: 5.184011e-01	ci right 5.322915e-01	k: 10507	n:20000
KS ci ratio: 2.468626e-01	ci left: 1.091252e-02	ci right 1.403162e-02	k: 248	n:20000
SNRPD3   20000 perm   3 sec   (6564 perm/sec)   p_kst 1.240000e-02   p_cons 5.253500e-01   p_joint 1.057500e-01

Joint ci ratio: 8.052984e-02	ci left: 7.024467e-02	ci right 7.617163e-02	k: 2195	n:30000
Cons ci ratio: 2.154947e-02	ci left: 5.187967e-01	ci right 5.301319e-01	k: 15734	n:30000
KS ci ratio: 1.977135e-01	ci left: 1.165375e-02	ci right 1.424185e-02	k: 387	n:30000
SNRPD3   30000 perm   5 sec   (6167 perm/sec)   p_kst 1.290000e-02   p_cons 5.244667e-01   p_joint 7.316667e-02

Joint ci ratio: 4.089436e-02	ci left: 1.829660e-01	ci right 1.906295e-01	k: 7471	n:40000
Cons ci ratio: 1.874195e-02	ci left: 5.174410e-01	ci right 5.272557e-01	k: 20894	n:40000
KS ci ratio: 1.719567e-01	ci left: 1.172137e-02	ci right 1.395018e-02	k: 512	n:40000
SNRPD3   40000 perm   7 sec   (5878 perm/sec)   p_kst 1.280000e-02   p_cons 5.223500e-01   p_joint 1.867750e-01

Joint ci ratio: 3.024472e-02	ci left: 2.476617e-01	ci right 2.552872e-01	k: 12573	n:50000
Cons ci ratio: 1.676175e-02	ci left: 5.180106e-01	ci right 5.267868e-01	k: 26120	n:50000
KS ci ratio: 1.525133e-01	ci left: 1.204472e-02	ci right 1.405240e-02	k: 651	n:50000
SNRPD3   50000 perm   9 sec   (5679 perm/sec)   p_kst 1.302000e-02   p_cons 5.224000e-01   p_joint 2.514600e-01

Joint ci ratio: 3.131164e-02	ci left: 2.038635e-01	ci right 2.103649e-01	k: 12426	n:60000
Cons ci ratio: 1.529577e-02	ci left: 5.185773e-01	ci right 5.265872e-01	k: 31355	n:60000
KS ci ratio: 1.397145e-01	ci left: 1.204455e-02	ci right 1.386968e-02	k: 776	n:60000
SNRPD3   60000 perm   11 sec   (5500 perm/sec)   p_kst 1.293333e-02   p_cons 5.225833e-01   p_joint 2.071000e-01

Joint ci ratio: 2.738548e-02	ci left: 2.233182e-01	ci right 2.295330e-01	k: 15849	n:70000
Cons ci ratio: 1.410122e-02	ci left: 5.209924e-01	ci right 5.284055e-01	k: 36729	n:70000
KS ci ratio: 1.296772e-01	ci left: 1.204950e-02	ci right 1.373409e-02	k: 901	n:70000
SNRPD3   70000 perm   13 sec   (5353 perm/sec)   p_kst 1.287143e-02   p_cons 5.247000e-01   p_joint 2.264143e-01

Joint ci ratio: 2.564999e-02	ci left: 2.230682e-01	ci right 2.288767e-01	k: 18077	n:80000
Cons ci ratio: 1.318721e-02	ci left: 5.213574e-01	ci right 5.282908e-01	k: 41986	n:80000
KS ci ratio: 1.212339e-01	ci left: 1.211738e-02	ci right 1.369324e-02	k: 1031	n:80000
SNRPD3   80000 perm   15 sec   (5216 perm/sec)   p_kst 1.288750e-02   p_cons 5.248250e-01   p_joint 2.259625e-01

Joint ci ratio: 2.243598e-02	ci left: 2.504279e-01	ci right 2.561213e-01	k: 22794	n:90000
Cons ci ratio: 1.242287e-02	ci left: 5.219646e-01	ci right 5.285005e-01	k: 47271	n:90000
KS ci ratio: 1.143504e-01	ci left: 1.215135e-02	ci right 1.363585e-02	k: 1159	n:90000
SNRPD3   90000 perm   18 sec   (5094 perm/sec)   p_kst 1.287778e-02   p_cons 5.252333e-01   p_joint 2.532667e-01

Joint ci ratio: 2.115476e-02	ci left: 2.528886e-01	ci right 2.583056e-01	k: 25559	n:100000
Cons ci ratio: 1.177413e-02	ci left: 5.226094e-01	ci right 5.288091e-01	k: 52571	n:100000
KS ci ratio: 1.086058e-01	ci left: 1.216110e-02	ci right 1.356737e-02	k: 1285	n:100000
SNRPD3   100000 perm   20 sec   (4975 perm/sec)   p_kst 1.285000e-02   p_cons 5.257100e-01   p_joint 2.555900e-01

Joint ci ratio: 2.018330e-02	ci left: 2.527705e-01	ci right 2.579333e-01	k: 28088	n:110000
Cons ci ratio: 1.123339e-02	ci left: 5.224348e-01	ci right 5.283457e-01	k: 57793	n:110000
KS ci ratio: 1.031681e-01	ci left: 1.228577e-02	ci right 1.363100e-02	k: 1424	n:110000
SNRPD3   110000 perm   23 sec   (4860 perm/sec)   p_kst 1.294545e-02   p_cons 5.253909e-01   p_joint 2.553455e-01

Joint ci ratio: 1.945342e-02	ci left: 2.503594e-01	ci right 2.552859e-01	k: 30338	n:120000
Cons ci ratio: 1.075263e-02	ci left: 5.226783e-01	ci right 5.283371e-01	k: 63061	n:120000
KS ci ratio: 9.901969e-02	ci left: 1.225291e-02	ci right 1.353746e-02	k: 1546	n:120000
SNRPD3   120000 perm   25 sec   (4753 perm/sec)   p_kst 1.288333e-02   p_cons 5.255083e-01   p_joint 2.528167e-01

Outputting figure to mutsig2_images.part000000000163/SNRPD3.2_393_120000_0.012883_0.52551_0.25282.png
                gene_name: SNRPD3
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 85 percent done.
SNTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
Cons ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
SNTB1   10000 perm   2 sec   (6255 perm/sec)   p_kst 1.400000e-03   p_cons 6.270000e-02   p_joint 6.100000e-03

Joint ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
Cons ci ratio: 1.065354e-01	ci left: 6.001272e-02	ci right 6.681489e-02	k: 1267	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
SNTB1   20000 perm   4 sec   (5494 perm/sec)   p_kst 1.200000e-03   p_cons 6.335000e-02   p_joint 1.350000e-03

Joint ci ratio: 3.353689e-01	ci left: 3.774267e-03	ci right 5.324092e-03	k: 135	n:30000
Cons ci ratio: 8.569486e-02	ci left: 6.239923e-02	ci right 6.801866e-02	k: 1955	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
SNTB1   30000 perm   6 sec   (5224 perm/sec)   p_kst 1.200000e-03   p_cons 6.516667e-02   p_joint 4.500000e-03

Joint ci ratio: 2.517445e-01	ci left: 5.266731e-03	ci right 6.806308e-03	k: 240	n:40000
Cons ci ratio: 7.403216e-02	ci left: 6.307000e-02	ci right 6.794331e-02	k: 2619	n:40000
KS ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
SNTB1   40000 perm   8 sec   (4971 perm/sec)   p_kst 1.225000e-03   p_cons 6.547500e-02   p_joint 6.000000e-03

Joint ci ratio: 2.245125e-01	ci left: 5.379655e-03	ci right 6.758638e-03	k: 302	n:50000
Cons ci ratio: 6.642294e-02	ci left: 6.295289e-02	ci right 6.729776e-02	k: 3255	n:50000
KS ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
SNTB1   50000 perm   10 sec   (4838 perm/sec)   p_kst 1.300000e-03   p_cons 6.510000e-02   p_joint 6.040000e-03

Joint ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
Cons ci ratio: 6.537598e-02	ci left: 5.468213e-02	ci right 5.839424e-02	k: 3391	n:60000
KS ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
SNTB1   60000 perm   13 sec   (4720 perm/sec)   p_kst 1.366667e-03   p_cons 5.651667e-02   p_joint 5.833333e-03

Joint ci ratio: 1.869315e-01	ci left: 5.659149e-03	ci right 6.839485e-03	k: 436	n:70000
Cons ci ratio: 6.037568e-02	ci left: 5.508252e-02	ci right 5.852576e-02	k: 3975	n:70000
KS ci ratio: 3.977370e-01	ci left: 1.110998e-03	ci right 1.674495e-03	k: 96	n:70000
SNTB1   70000 perm   15 sec   (4617 perm/sec)   p_kst 1.371429e-03   p_cons 5.678571e-02   p_joint 6.228571e-03

Joint ci ratio: 1.749341e-01	ci left: 5.691693e-03	ci right 6.794575e-03	k: 498	n:80000
Cons ci ratio: 5.644341e-02	ci left: 5.525527e-02	ci right 5.847696e-02	k: 4548	n:80000
KS ci ratio: 3.718094e-01	ci left: 1.130214e-03	ci right 1.657013e-03	k: 110	n:80000
SNTB1   80000 perm   18 sec   (4504 perm/sec)   p_kst 1.375000e-03   p_cons 5.685000e-02   p_joint 6.225000e-03

Joint ci ratio: 1.906007e-01	ci left: 4.231878e-03	ci right 5.133837e-03	k: 420	n:90000
Cons ci ratio: 5.339609e-02	ci left: 5.498937e-02	ci right 5.801708e-02	k: 5084	n:90000
KS ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
SNTB1   90000 perm   20 sec   (4415 perm/sec)   p_kst 1.355556e-03   p_cons 5.648889e-02   p_joint 4.666667e-03

Joint ci ratio: 1.564344e-01	ci left: 5.751686e-03	ci right 6.737283e-03	k: 623	n:100000
Cons ci ratio: 5.070357e-02	ci left: 5.496818e-02	ci right 5.783762e-02	k: 5639	n:100000
KS ci ratio: 3.253006e-01	ci left: 1.214545e-03	ci right 1.695119e-03	k: 144	n:100000
SNTB1   100000 perm   23 sec   (4330 perm/sec)   p_kst 1.440000e-03   p_cons 5.639000e-02   p_joint 6.230000e-03

Joint ci ratio: 1.484380e-01	ci left: 5.832181e-03	ci right 6.775952e-03	k: 692	n:110000
Cons ci ratio: 4.815916e-02	ci left: 5.543934e-02	ci right 5.818409e-02	k: 6248	n:110000
KS ci ratio: 3.004165e-01	ci left: 1.313599e-03	ci right 1.786035e-03	k: 169	n:110000
SNTB1   110000 perm   26 sec   (4232 perm/sec)   p_kst 1.536364e-03   p_cons 5.680000e-02   p_joint 6.290909e-03

Joint ci ratio: 1.421186e-01	ci left: 5.852091e-03	ci right 6.755350e-03	k: 755	n:120000
Cons ci ratio: 4.635121e-02	ci left: 5.494472e-02	ci right 5.756011e-02	k: 6749	n:120000
KS ci ratio: 2.864342e-01	ci left: 1.335380e-03	ci right 1.789255e-03	k: 186	n:120000
SNTB1   120000 perm   29 sec   (4154 perm/sec)   p_kst 1.550000e-03   p_cons 5.624167e-02   p_joint 6.291667e-03

Joint ci ratio: 1.564220e-01	ci left: 4.431526e-03	ci right 5.190822e-03	k: 624	n:130000
Cons ci ratio: 4.458938e-02	ci left: 5.486278e-02	ci right 5.737245e-02	k: 7294	n:130000
KS ci ratio: 2.776676e-01	ci left: 1.318437e-03	ci right 1.750442e-03	k: 198	n:130000
SNTB1   130000 perm   32 sec   (4075 perm/sec)   p_kst 1.523077e-03   p_cons 5.610769e-02   p_joint 4.800000e-03

Joint ci ratio: 1.717491e-01	ci left: 3.388706e-03	ci right 4.032118e-03	k: 518	n:140000
Cons ci ratio: 4.289848e-02	ci left: 5.507700e-02	ci right 5.749856e-02	k: 7879	n:140000
KS ci ratio: 2.658997e-01	ci left: 1.344079e-03	ci right 1.762715e-03	k: 216	n:140000
SNTB1   140000 perm   35 sec   (4000 perm/sec)   p_kst 1.542857e-03   p_cons 5.627857e-02   p_joint 3.700000e-03

Joint ci ratio: 1.531845e-01	ci left: 4.013616e-03	ci right 4.685764e-03	k: 651	n:150000
Cons ci ratio: 4.141752e-02	ci left: 5.518499e-02	ci right 5.752553e-02	k: 8452	n:150000
KS ci ratio: 2.582780e-01	ci left: 1.335447e-03	ci right 1.737549e-03	k: 229	n:150000
SNTB1   150000 perm   38 sec   (3931 perm/sec)   p_kst 1.526667e-03   p_cons 5.634667e-02   p_joint 4.340000e-03

Joint ci ratio: 1.492354e-01	ci left: 3.973233e-03	ci right 4.619933e-03	k: 686	n:160000
Cons ci ratio: 4.012011e-02	ci left: 5.517549e-02	ci right 5.744062e-02	k: 9008	n:160000
KS ci ratio: 2.492303e-01	ci left: 1.351478e-03	ci right 1.741942e-03	k: 246	n:160000
SNTB1   160000 perm   42 sec   (3852 perm/sec)   p_kst 1.537500e-03   p_cons 5.630000e-02   p_joint 4.287500e-03

Joint ci ratio: 1.454756e-01	ci left: 3.943466e-03	ci right 4.567744e-03	k: 722	n:170000
Cons ci ratio: 3.885145e-02	ci left: 5.540126e-02	ci right 5.760213e-02	k: 9604	n:170000
KS ci ratio: 2.433906e-01	ci left: 1.338210e-03	ci right 1.714413e-03	k: 258	n:170000
SNTB1   170000 perm   45 sec   (3783 perm/sec)   p_kst 1.517647e-03   p_cons 5.649412e-02   p_joint 4.247059e-03

Joint ci ratio: 1.412407e-01	ci left: 3.960064e-03	ci right 4.567184e-03	k: 766	n:180000
Cons ci ratio: 3.780018e-02	ci left: 5.531112e-02	ci right 5.744764e-02	k: 10147	n:180000
KS ci ratio: 2.353480e-01	ci left: 1.357870e-03	ci right 1.725150e-03	k: 276	n:180000
SNTB1   180000 perm   48 sec   (3722 perm/sec)   p_kst 1.533333e-03   p_cons 5.637222e-02   p_joint 4.255556e-03

Joint ci ratio: 1.375258e-01	ci left: 3.964985e-03	ci right 4.555561e-03	k: 808	n:190000
Cons ci ratio: 3.683169e-02	ci left: 5.522597e-02	ci right 5.730339e-02	k: 10689	n:190000
KS ci ratio: 2.288316e-01	ci left: 1.365719e-03	ci right 1.723450e-03	k: 292	n:190000
SNTB1   190000 perm   52 sec   (3662 perm/sec)   p_kst 1.536842e-03   p_cons 5.625789e-02   p_joint 4.252632e-03

Joint ci ratio: 1.343273e-01	ci left: 3.955103e-03	ci right 4.529412e-03	k: 847	n:200000
Cons ci ratio: 3.596456e-02	ci left: 5.506073e-02	ci right 5.708216e-02	k: 11213	n:200000
KS ci ratio: 2.235539e-01	ci left: 1.363467e-03	ci right 1.711237e-03	k: 306	n:200000
SNTB1   200000 perm   56 sec   (3603 perm/sec)   p_kst 1.530000e-03   p_cons 5.606500e-02   p_joint 4.235000e-03

Joint ci ratio: 1.308983e-01	ci left: 3.973945e-03	ci right 4.535113e-03	k: 892	n:210000
Cons ci ratio: 3.507841e-02	ci left: 5.514316e-02	ci right 5.711673e-02	k: 11786	n:210000
KS ci ratio: 2.182850e-01	ci left: 1.366017e-03	ci right 1.705124e-03	k: 321	n:210000
SNTB1   210000 perm   59 sec   (3545 perm/sec)   p_kst 1.528571e-03   p_cons 5.612381e-02   p_joint 4.247619e-03

Joint ci ratio: 1.402898e-01	ci left: 3.288211e-03	ci right 3.788646e-03	k: 777	n:220000
Cons ci ratio: 3.429146e-02	ci left: 5.510594e-02	ci right 5.703305e-02	k: 12334	n:220000
KS ci ratio: 2.133719e-01	ci left: 1.368422e-03	ci right 1.699480e-03	k: 336	n:220000
SNTB1   220000 perm   63 sec   (3490 perm/sec)   p_kst 1.527273e-03   p_cons 5.606364e-02   p_joint 3.531818e-03

Joint ci ratio: 1.376624e-01	ci left: 3.271143e-03	ci right 3.758892e-03	k: 807	n:230000
Cons ci ratio: 3.356485e-02	ci left: 5.504221e-02	ci right 5.692552e-02	k: 12875	n:230000
KS ci ratio: 2.102774e-01	ci left: 1.350096e-03	ci right 1.671372e-03	k: 346	n:230000
SNTB1   230000 perm   67 sec   (3436 perm/sec)   p_kst 1.504348e-03   p_cons 5.597826e-02   p_joint 3.508696e-03

Joint ci ratio: 1.350157e-01	ci left: 3.263630e-03	ci right 3.740151e-03	k: 839	n:240000
Cons ci ratio: 3.289684e-02	ci left: 5.493872e-02	ci right 5.678036e-02	k: 13405	n:240000
KS ci ratio: 2.039097e-01	ci left: 1.380758e-03	ci right 1.698142e-03	k: 368	n:240000
SNTB1   240000 perm   71 sec   (3383 perm/sec)   p_kst 1.533333e-03   p_cons 5.585417e-02   p_joint 3.495833e-03

Joint ci ratio: 1.326687e-01	ci left: 3.249065e-03	ci right 3.714563e-03	k: 869	n:250000
Cons ci ratio: 3.226719e-02	ci left: 5.484385e-02	ci right 5.664647e-02	k: 13935	n:250000
KS ci ratio: 2.004110e-01	ci left: 1.374895e-03	ci right 1.684846e-03	k: 381	n:250000
SNTB1   250000 perm   75 sec   (3334 perm/sec)   p_kst 1.524000e-03   p_cons 5.574000e-02   p_joint 3.476000e-03

Joint ci ratio: 1.301502e-01	ci left: 3.250572e-03	ci right 3.706761e-03	k: 903	n:260000
Cons ci ratio: 3.158459e-02	ci left: 5.504672e-02	ci right 5.681704e-02	k: 14541	n:260000
KS ci ratio: 1.965885e-01	ci left: 1.376840e-03	ci right 1.680600e-03	k: 396	n:260000
SNTB1   260000 perm   79 sec   (3283 perm/sec)   p_kst 1.523077e-03   p_cons 5.592692e-02   p_joint 3.473077e-03

Joint ci ratio: 1.348811e-01	ci left: 2.908126e-03	ci right 3.332281e-03	k: 841	n:270000
Cons ci ratio: 3.096519e-02	ci left: 5.516140e-02	ci right 5.690000e-02	k: 15127	n:270000
KS ci ratio: 1.939219e-01	ci left: 1.364594e-03	ci right 1.661086e-03	k: 407	n:270000
SNTB1   270000 perm   83 sec   (3237 perm/sec)   p_kst 1.507407e-03   p_cons 5.602593e-02   p_joint 3.114815e-03

Joint ci ratio: 1.160682e-01	ci left: 3.821586e-03	ci right 4.295913e-03	k: 1135	n:280000
Cons ci ratio: 3.042293e-02	ci left: 5.512282e-02	ci right 5.682924e-02	k: 15672	n:280000
KS ci ratio: 1.906784e-01	ci left: 1.363451e-03	ci right 1.654166e-03	k: 421	n:280000
SNTB1   280000 perm   88 sec   (3193 perm/sec)   p_kst 1.503571e-03   p_cons 5.597143e-02   p_joint 4.053571e-03

Joint ci ratio: 1.142237e-01	ci left: 3.813718e-03	ci right 4.279038e-03	k: 1172	n:290000
Cons ci ratio: 2.992286e-02	ci left: 5.503579e-02	ci right 5.671103e-02	k: 16202	n:290000
KS ci ratio: 1.875925e-01	ci left: 1.362426e-03	ci right 1.647685e-03	k: 435	n:290000
SNTB1   290000 perm   92 sec   (3148 perm/sec)   p_kst 1.500000e-03   p_cons 5.586897e-02   p_joint 4.041379e-03

Joint ci ratio: 1.123247e-01	ci left: 3.816150e-03	ci right 4.273513e-03	k: 1212	n:300000
Cons ci ratio: 2.944665e-02	ci left: 5.495478e-02	ci right 5.660048e-02	k: 16732	n:300000
KS ci ratio: 1.840383e-01	ci left: 1.371043e-03	ci right 1.652061e-03	k: 452	n:300000
SNTB1   300000 perm   97 sec   (3106 perm/sec)   p_kst 1.506667e-03   p_cons 5.577333e-02   p_joint 4.040000e-03

Joint ci ratio: 1.181982e-01	ci left: 3.326452e-03	ci right 3.747429e-03	k: 1095	n:310000
Cons ci ratio: 2.899692e-02	ci left: 5.486318e-02	ci right 5.648063e-02	k: 17257	n:310000
KS ci ratio: 1.814537e-01	ci left: 1.366833e-03	ci right 1.642621e-03	k: 465	n:310000
SNTB1   310000 perm   101 sec   (3059 perm/sec)   p_kst 1.500000e-03   p_cons 5.566774e-02   p_joint 3.532258e-03

Joint ci ratio: 1.162005e-01	ci left: 3.337771e-03	ci right 3.752550e-03	k: 1133	n:320000
Cons ci ratio: 2.852644e-02	ci left: 5.492647e-02	ci right 5.651908e-02	k: 17830	n:320000
KS ci ratio: 1.780467e-01	ci left: 1.377839e-03	ci right 1.650066e-03	k: 483	n:320000
SNTB1   320000 perm   106 sec   (3018 perm/sec)   p_kst 1.509375e-03   p_cons 5.571875e-02   p_joint 3.540625e-03

Joint ci ratio: 1.071498e-01	ci left: 3.822888e-03	ci right 4.258620e-03	k: 1332	n:330000
Cons ci ratio: 2.809512e-02	ci left: 5.492292e-02	ci right 5.649096e-02	k: 18382	n:330000
KS ci ratio: 1.760584e-01	ci left: 1.367942e-03	ci right 1.634874e-03	k: 494	n:330000
SNTB1   330000 perm   111 sec   (2979 perm/sec)   p_kst 1.496970e-03   p_cons 5.570303e-02   p_joint 4.036364e-03

Joint ci ratio: 1.057711e-01	ci left: 3.810649e-03	ci right 4.239049e-03	k: 1367	n:340000
Cons ci ratio: 2.767351e-02	ci left: 5.495481e-02	ci right 5.649984e-02	k: 18946	n:340000
KS ci ratio: 1.743079e-01	ci left: 1.355830e-03	ci right 1.617491e-03	k: 504	n:340000
SNTB1   340000 perm   116 sec   (2938 perm/sec)   p_kst 1.482353e-03   p_cons 5.572353e-02   p_joint 4.020588e-03

Joint ci ratio: 9.532278e-02	ci left: 4.579282e-03	ci right 5.040404e-03	k: 1682	n:350000
Cons ci ratio: 2.729477e-02	ci left: 5.489136e-02	ci right 5.641315e-02	k: 19477	n:350000
KS ci ratio: 1.721072e-01	ci left: 1.352624e-03	ci right 1.610029e-03	k: 517	n:350000
SNTB1   350000 perm   121 sec   (2897 perm/sec)   p_kst 1.477143e-03   p_cons 5.564857e-02   p_joint 4.805714e-03

Joint ci ratio: 9.393736e-02	ci left: 4.587682e-03	ci right 5.042567e-03	k: 1732	n:360000
Cons ci ratio: 2.691480e-02	ci left: 5.489506e-02	ci right 5.639544e-02	k: 20031	n:360000
KS ci ratio: 1.701483e-01	ci left: 1.346957e-03	ci right 1.600066e-03	k: 529	n:360000
SNTB1   360000 perm   126 sec   (2861 perm/sec)   p_kst 1.469444e-03   p_cons 5.564167e-02   p_joint 4.811111e-03

Joint ci ratio: 1.014508e-01	ci left: 3.814968e-03	ci right 4.225292e-03	k: 1486	n:370000
Cons ci ratio: 2.653525e-02	ci left: 5.495778e-02	ci right 5.643837e-02	k: 20607	n:370000
KS ci ratio: 1.677904e-01	ci left: 1.349379e-03	ci right 1.599074e-03	k: 544	n:370000
SNTB1   370000 perm   131 sec   (2826 perm/sec)   p_kst 1.470270e-03   p_cons 5.569459e-02   p_joint 4.016216e-03

Joint ci ratio: 1.001462e-01	ci left: 3.814618e-03	ci right 4.219319e-03	k: 1525	n:380000
Cons ci ratio: 2.618704e-02	ci left: 5.495458e-02	ci right 5.641536e-02	k: 21159	n:380000
KS ci ratio: 1.647928e-01	ci left: 1.364311e-03	ci right 1.611812e-03	k: 564	n:380000
SNTB1   380000 perm   136 sec   (2792 perm/sec)   p_kst 1.484211e-03   p_cons 5.568158e-02   p_joint 4.013158e-03

Joint ci ratio: 9.898595e-02	ci left: 3.806816e-03	ci right 4.205737e-03	k: 1561	n:390000
Cons ci ratio: 2.582511e-02	ci left: 5.506125e-02	ci right 5.650434e-02	k: 21754	n:390000
KS ci ratio: 1.632125e-01	ci left: 1.356376e-03	ci right 1.599846e-03	k: 575	n:390000
SNTB1   390000 perm   141 sec   (2758 perm/sec)   p_kst 1.474359e-03   p_cons 5.577949e-02   p_joint 4.002564e-03

Joint ci ratio: 9.783438e-02	ci left: 3.801868e-03	ci right 4.195371e-03	k: 1598	n:400000
Cons ci ratio: 2.550317e-02	ci left: 5.505834e-02	ci right 5.648310e-02	k: 22307	n:400000
KS ci ratio: 1.619533e-01	ci left: 1.344050e-03	ci right 1.583265e-03	k: 584	n:400000
SNTB1   400000 perm   147 sec   (2725 perm/sec)   p_kst 1.460000e-03   p_cons 5.576750e-02   p_joint 3.995000e-03

Joint ci ratio: 9.793145e-02	ci left: 3.701992e-03	ci right 4.085559e-03	k: 1595	n:410000
Cons ci ratio: 2.517782e-02	ci left: 5.511872e-02	ci right 5.652659e-02	k: 22886	n:410000
KS ci ratio: 1.592528e-01	ci left: 1.358089e-03	ci right 1.595387e-03	k: 604	n:410000
SNTB1   410000 perm   152 sec   (2693 perm/sec)   p_kst 1.473171e-03   p_cons 5.581951e-02   p_joint 3.890244e-03

Joint ci ratio: 1.019580e-01	ci left: 3.328277e-03	ci right 3.688150e-03	k: 1472	n:420000
Cons ci ratio: 2.485339e-02	ci left: 5.522368e-02	ci right 5.661579e-02	k: 23485	n:420000
KS ci ratio: 1.573146e-01	ci left: 1.360053e-03	ci right 1.594529e-03	k: 619	n:420000
SNTB1   420000 perm   158 sec   (2661 perm/sec)   p_kst 1.473810e-03   p_cons 5.591667e-02   p_joint 3.504762e-03

Joint ci ratio: 1.011387e-01	ci left: 3.305270e-03	ci right 3.659612e-03	k: 1496	n:430000
Cons ci ratio: 2.458284e-02	ci left: 5.514583e-02	ci right 5.652063e-02	k: 24007	n:430000
KS ci ratio: 1.564354e-01	ci left: 1.344063e-03	ci right 1.574366e-03	k: 626	n:430000
SNTB1   430000 perm   164 sec   (2630 perm/sec)   p_kst 1.455814e-03   p_cons 5.583023e-02   p_joint 3.479070e-03

Joint ci ratio: 9.997670e-02	ci left: 3.307695e-03	ci right 3.657985e-03	k: 1531	n:440000
Cons ci ratio: 2.431412e-02	ci left: 5.510097e-02	ci right 5.645943e-02	k: 24542	n:440000
KS ci ratio: 1.549600e-01	ci left: 1.339726e-03	ci right 1.566920e-03	k: 638	n:440000
SNTB1   440000 perm   169 sec   (2600 perm/sec)   p_kst 1.450000e-03   p_cons 5.577727e-02   p_joint 3.479545e-03

Joint ci ratio: 9.869597e-02	ci left: 3.320872e-03	ci right 3.667791e-03	k: 1571	n:450000
Cons ci ratio: 2.403879e-02	ci left: 5.512448e-02	ci right 5.646791e-02	k: 25107	n:450000
KS ci ratio: 1.520131e-01	ci left: 1.363378e-03	ci right 1.589785e-03	k: 663	n:450000
SNTB1   450000 perm   175 sec   (2570 perm/sec)   p_kst 1.473333e-03   p_cons 5.579333e-02   p_joint 3.491111e-03

Joint ci ratio: 9.779865e-02	ci left: 3.310173e-03	ci right 3.652650e-03	k: 1600	n:460000
Cons ci ratio: 2.379077e-02	ci left: 5.506706e-02	ci right 5.639506e-02	k: 25635	n:460000
KS ci ratio: 1.501033e-01	ci left: 1.369299e-03	ci right 1.593577e-03	k: 680	n:460000
SNTB1   460000 perm   181 sec   (2541 perm/sec)   p_kst 1.478261e-03   p_cons 5.572826e-02   p_joint 3.478261e-03

Joint ci ratio: 9.651033e-02	ci left: 3.329011e-03	ci right 3.668644e-03	k: 1643	n:470000
Cons ci ratio: 2.354741e-02	ci left: 5.502485e-02	ci right 5.633808e-02	k: 26169	n:470000
KS ci ratio: 1.483703e-01	ci left: 1.372937e-03	ci right 1.594984e-03	k: 696	n:470000
SNTB1   470000 perm   187 sec   (2514 perm/sec)   p_kst 1.480851e-03   p_cons 5.567872e-02   p_joint 3.495745e-03

Joint ci ratio: 9.541362e-02	ci left: 3.336924e-03	ci right 3.673279e-03	k: 1681	n:480000
Cons ci ratio: 2.328829e-02	ci left: 5.508806e-02	ci right 5.638814e-02	k: 26753	n:480000
KS ci ratio: 1.469024e-01	ci left: 1.372423e-03	ci right 1.591998e-03	k: 710	n:480000
SNTB1   480000 perm   193 sec   (2486 perm/sec)   p_kst 1.479167e-03   p_cons 5.573542e-02   p_joint 3.502083e-03

Joint ci ratio: 9.438100e-02	ci left: 3.342542e-03	ci right 3.675616e-03	k: 1718	n:490000
Cons ci ratio: 2.304558e-02	ci left: 5.511224e-02	ci right 5.639914e-02	k: 27319	n:490000
KS ci ratio: 1.453769e-01	ci left: 1.373908e-03	ci right 1.591239e-03	k: 725	n:490000
SNTB1   490000 perm   199 sec   (2460 perm/sec)   p_kst 1.479592e-03   p_cons 5.575306e-02   p_joint 3.506122e-03

Joint ci ratio: 9.354170e-02	ci left: 3.336234e-03	ci right 3.665560e-03	k: 1749	n:500000
Cons ci ratio: 2.279343e-02	ci left: 5.521309e-02	ci right 5.648806e-02	k: 27924	n:500000
KS ci ratio: 1.439952e-01	ci left: 1.373416e-03	ci right 1.588427e-03	k: 739	n:500000
SNTB1   500000 perm   205 sec   (2433 perm/sec)   p_kst 1.478000e-03   p_cons 5.584800e-02   p_joint 3.498000e-03

Joint ci ratio: 9.280287e-02	ci left: 3.324439e-03	ci right 3.649869e-03	k: 1777	n:510000
Cons ci ratio: 2.257830e-02	ci left: 5.517549e-02	ci right 5.643741e-02	k: 28460	n:510000
KS ci ratio: 1.429373e-01	ci left: 1.367280e-03	ci right 1.579624e-03	k: 750	n:510000
SNTB1   510000 perm   212 sec   (2408 perm/sec)   p_kst 1.470588e-03   p_cons 5.580392e-02   p_joint 3.484314e-03

Joint ci ratio: 9.169991e-02	ci left: 3.341294e-03	ci right 3.664277e-03	k: 1820	n:520000
Cons ci ratio: 2.236140e-02	ci left: 5.517573e-02	ci right 5.642538e-02	k: 29015	n:520000
KS ci ratio: 1.416235e-01	ci left: 1.366951e-03	ci right 1.577128e-03	k: 764	n:520000
SNTB1   520000 perm   218 sec   (2383 perm/sec)   p_kst 1.469231e-03   p_cons 5.579808e-02   p_joint 3.500000e-03

Joint ci ratio: 9.095420e-02	ci left: 3.333561e-03	ci right 3.653037e-03	k: 1850	n:530000
Cons ci ratio: 2.216055e-02	ci left: 5.512910e-02	ci right 5.636633e-02	k: 29545	n:530000
KS ci ratio: 1.401651e-01	ci left: 1.370284e-03	ci right 1.578623e-03	k: 780	n:530000
SNTB1   530000 perm   225 sec   (2359 perm/sec)   p_kst 1.471698e-03   p_cons 5.574528e-02   p_joint 3.490566e-03

Joint ci ratio: 9.032281e-02	ci left: 3.318884e-03	ci right 3.634628e-03	k: 1876	n:540000
Cons ci ratio: 2.196463e-02	ci left: 5.508608e-02	ci right 5.631128e-02	k: 30076	n:540000
KS ci ratio: 1.392769e-01	ci left: 1.362779e-03	ci right 1.568555e-03	k: 790	n:540000
SNTB1   540000 perm   231 sec   (2335 perm/sec)   p_kst 1.462963e-03   p_cons 5.569630e-02   p_joint 3.474074e-03

Joint ci ratio: 8.970438e-02	ci left: 3.304748e-03	ci right 3.616882e-03	k: 1902	n:550000
Cons ci ratio: 2.176591e-02	ci left: 5.508266e-02	ci right 5.629657e-02	k: 30628	n:550000
KS ci ratio: 1.381465e-01	ci left: 1.360817e-03	ci right 1.564492e-03	k: 803	n:550000
SNTB1   550000 perm   238 sec   (2311 perm/sec)   p_kst 1.460000e-03   p_cons 5.568727e-02   p_joint 3.458182e-03

Joint ci ratio: 8.909848e-02	ci left: 3.291124e-03	ci right 3.599762e-03	k: 1928	n:560000
Cons ci ratio: 2.158275e-02	ci left: 5.502967e-02	ci right 5.623208e-02	k: 31152	n:560000
KS ci ratio: 1.376350e-01	ci left: 1.346861e-03	ci right 1.547639e-03	k: 809	n:560000
SNTB1   560000 perm   246 sec   (2281 perm/sec)   p_kst 1.444643e-03   p_cons 5.562857e-02   p_joint 3.442857e-03

Joint ci ratio: 8.848198e-02	ci left: 3.279701e-03	ci right 3.585030e-03	k: 1955	n:570000
Cons ci ratio: 2.138984e-02	ci left: 5.504840e-02	ci right 5.624033e-02	k: 31716	n:570000
KS ci ratio: 1.369611e-01	ci left: 1.336785e-03	ci right 1.535005e-03	k: 817	n:570000
SNTB1   570000 perm   253 sec   (2257 perm/sec)   p_kst 1.433333e-03   p_cons 5.564211e-02   p_joint 3.429825e-03

Joint ci ratio: 8.320740e-02	ci left: 3.653408e-03	ci right 3.972270e-03	k: 2210	n:580000
Cons ci ratio: 2.120028e-02	ci left: 5.507511e-02	ci right 5.625692e-02	k: 32285	n:580000
KS ci ratio: 1.353971e-01	ci left: 1.345379e-03	ci right 1.542413e-03	k: 836	n:580000
SNTB1   580000 perm   260 sec   (2235 perm/sec)   p_kst 1.441379e-03   p_cons 5.566379e-02   p_joint 3.810345e-03

Joint ci ratio: 8.246466e-02	ci left: 3.657878e-03	ci right 3.974143e-03	k: 2250	n:590000
Cons ci ratio: 2.101668e-02	ci left: 5.509590e-02	ci right 5.626779e-02	k: 32851	n:590000
KS ci ratio: 1.341211e-01	ci left: 1.348781e-03	ci right 1.544303e-03	k: 852	n:590000
SNTB1   590000 perm   267 sec   (2209 perm/sec)   p_kst 1.444068e-03   p_cons 5.567966e-02   p_joint 3.813559e-03

Joint ci ratio: 8.184913e-02	ci left: 3.652416e-03	ci right 3.965739e-03	k: 2284	n:600000
Cons ci ratio: 2.082688e-02	ci left: 5.517076e-02	ci right 5.633353e-02	k: 33450	n:600000
KS ci ratio: 1.329571e-01	ci left: 1.350466e-03	ci right 1.544399e-03	k: 867	n:600000
SNTB1   600000 perm   274 sec   (2188 perm/sec)   p_kst 1.445000e-03   p_cons 5.575000e-02   p_joint 3.806667e-03

Joint ci ratio: 8.537358e-02	ci left: 3.297179e-03	ci right 3.592814e-03	k: 2100	n:610000
Cons ci ratio: 2.064631e-02	ci left: 5.522202e-02	ci right 5.637565e-02	k: 34036	n:610000
KS ci ratio: 1.318229e-01	ci left: 1.352103e-03	ci right 1.544485e-03	k: 882	n:610000
SNTB1   610000 perm   281 sec   (2168 perm/sec)   p_kst 1.445902e-03   p_cons 5.579672e-02   p_joint 3.442623e-03

Joint ci ratio: 8.479078e-02	ci left: 3.289777e-03	ci right 3.582635e-03	k: 2129	n:620000
Cons ci ratio: 2.048070e-02	ci left: 5.521869e-02	ci right 5.636289e-02	k: 34589	n:620000
KS ci ratio: 1.309364e-01	ci left: 1.349014e-03	ci right 1.539565e-03	k: 894	n:620000
SNTB1   620000 perm   289 sec   (2147 perm/sec)   p_kst 1.441935e-03   p_cons 5.578871e-02   p_joint 3.433871e-03

Joint ci ratio: 8.416110e-02	ci left: 3.287279e-03	ci right 3.577635e-03	k: 2161	n:630000
Cons ci ratio: 2.031655e-02	ci left: 5.522813e-02	ci right 5.636326e-02	k: 35150	n:630000
KS ci ratio: 1.297814e-01	ci left: 1.352169e-03	ci right 1.541351e-03	k: 910	n:630000
SNTB1   630000 perm   296 sec   (2128 perm/sec)   p_kst 1.444444e-03   p_cons 5.579365e-02   p_joint 3.430159e-03

Joint ci ratio: 7.920660e-02	ci left: 3.661452e-03	ci right 3.964942e-03	k: 2439	n:640000
Cons ci ratio: 2.014644e-02	ci left: 5.528864e-02	ci right 5.641538e-02	k: 35744	n:640000
KS ci ratio: 1.287955e-01	ci left: 1.352209e-03	ci right 1.539850e-03	k: 924	n:640000
SNTB1   640000 perm   304 sec   (2109 perm/sec)   p_kst 1.443750e-03   p_cons 5.585000e-02   p_joint 3.810938e-03

Joint ci ratio: 7.845406e-02	ci left: 3.676005e-03	ci right 3.977674e-03	k: 2486	n:650000
Cons ci ratio: 1.997907e-02	ci left: 5.535498e-02	ci right 5.647360e-02	k: 36343	n:650000
KS ci ratio: 1.272227e-01	ci left: 1.365658e-03	ci right 1.552676e-03	k: 947	n:650000
SNTB1   650000 perm   311 sec   (2088 perm/sec)   p_kst 1.456923e-03   p_cons 5.591231e-02   p_joint 3.824615e-03

Joint ci ratio: 7.773796e-02	ci left: 3.688645e-03	ci right 3.988463e-03	k: 2532	n:660000
Cons ci ratio: 1.983287e-02	ci left: 5.532886e-02	ci right 5.643867e-02	k: 36882	n:660000
KS ci ratio: 1.259662e-01	ci left: 1.372843e-03	ci right 1.558850e-03	k: 966	n:660000
SNTB1   660000 perm   319 sec   (2069 perm/sec)   p_kst 1.463636e-03   p_cons 5.588182e-02   p_joint 3.836364e-03

Joint ci ratio: 7.695132e-02	ci left: 3.709703e-03	ci right 4.008045e-03	k: 2584	n:670000
Cons ci ratio: 1.967480e-02	ci left: 5.538378e-02	ci right 5.648574e-02	k: 37475	n:670000
KS ci ratio: 1.249367e-01	ci left: 1.375484e-03	ci right 1.560213e-03	k: 982	n:670000
SNTB1   670000 perm   327 sec   (2049 perm/sec)   p_kst 1.465672e-03   p_cons 5.593284e-02   p_joint 3.856716e-03

Joint ci ratio: 8.039803e-02	ci left: 3.343722e-03	ci right 3.625240e-03	k: 2368	n:680000
Cons ci ratio: 1.953567e-02	ci left: 5.535514e-02	ci right 5.644865e-02	k: 38012	n:680000
KS ci ratio: 1.239943e-01	ci left: 1.376628e-03	ci right 1.560014e-03	k: 997	n:680000
SNTB1   680000 perm   335 sec   (2031 perm/sec)   p_kst 1.466176e-03   p_cons 5.590000e-02   p_joint 3.482353e-03

Joint ci ratio: 7.967768e-02	ci left: 3.356335e-03	ci right 3.636265e-03	k: 2411	n:690000
Cons ci ratio: 1.939386e-02	ci left: 5.535765e-02	ci right 5.644318e-02	k: 38570	n:690000
KS ci ratio: 1.228302e-01	ci left: 1.383364e-03	ci right 1.565790e-03	k: 1016	n:690000
SNTB1   690000 perm   343 sec   (2013 perm/sec)   p_kst 1.472464e-03   p_cons 5.589855e-02   p_joint 3.494203e-03

Joint ci ratio: 7.910581e-02	ci left: 3.357394e-03	ci right 3.635311e-03	k: 2446	n:700000
Cons ci ratio: 1.924234e-02	ci left: 5.542980e-02	ci right 5.650816e-02	k: 39177	n:700000
KS ci ratio: 1.219934e-01	ci left: 1.382989e-03	ci right 1.564034e-03	k: 1030	n:700000
SNTB1   700000 perm   351 sec   (1995 perm/sec)   p_kst 1.471429e-03   p_cons 5.596714e-02   p_joint 3.494286e-03

Joint ci ratio: 7.862558e-02	ci left: 3.351527e-03	ci right 3.627196e-03	k: 2476	n:710000
Cons ci ratio: 1.909152e-02	ci left: 5.551537e-02	ci right 5.658684e-02	k: 39795	n:710000
KS ci ratio: 1.213481e-01	ci left: 1.378531e-03	ci right 1.557970e-03	k: 1041	n:710000
SNTB1   710000 perm   359 sec   (1978 perm/sec)   p_kst 1.466197e-03   p_cons 5.604930e-02   p_joint 3.487324e-03

Joint ci ratio: 7.796697e-02	ci left: 3.362170e-03	ci right 3.636293e-03	k: 2518	n:720000
Cons ci ratio: 1.895014e-02	ci left: 5.556542e-02	ci right 5.662983e-02	k: 40389	n:720000
KS ci ratio: 1.203131e-01	ci left: 1.383630e-03	ci right 1.562086e-03	k: 1059	n:720000
SNTB1   720000 perm   367 sec   (1961 perm/sec)   p_kst 1.470833e-03   p_cons 5.609583e-02   p_joint 3.497222e-03

Joint ci ratio: 7.743089e-02	ci left: 3.363127e-03	ci right 3.635357e-03	k: 2553	n:730000
Cons ci ratio: 1.882939e-02	ci left: 5.551592e-02	ci right 5.657254e-02	k: 40911	n:730000
KS ci ratio: 1.195822e-01	ci left: 1.381950e-03	ci right 1.559030e-03	k: 1072	n:730000
SNTB1   730000 perm   376 sec   (1944 perm/sec)   p_kst 1.468493e-03   p_cons 5.604247e-02   p_joint 3.497260e-03

Joint ci ratio: 7.701027e-02	ci left: 3.354786e-03	ci right 3.624800e-03	k: 2581	n:740000
Cons ci ratio: 1.870710e-02	ci left: 5.548932e-02	ci right 5.653849e-02	k: 41449	n:740000
KS ci ratio: 1.189742e-01	ci left: 1.377696e-03	ci right 1.553271e-03	k: 1083	n:740000
SNTB1   740000 perm   384 sec   (1928 perm/sec)   p_kst 1.463514e-03   p_cons 5.601216e-02   p_joint 3.487838e-03

Joint ci ratio: 7.634732e-02	ci left: 3.368905e-03	ci right 3.637619e-03	k: 2626	n:750000
Cons ci ratio: 1.858387e-02	ci left: 5.548202e-02	ci right 5.652408e-02	k: 42001	n:750000
KS ci ratio: 1.178912e-01	ci left: 1.385204e-03	ci right 1.560016e-03	k: 1103	n:750000
SNTB1   750000 perm   392 sec   (1911 perm/sec)   p_kst 1.470667e-03   p_cons 5.600133e-02   p_joint 3.501333e-03

Joint ci ratio: 7.578664e-02	ci left: 3.374918e-03	ci right 3.642046e-03	k: 2665	n:760000
Cons ci ratio: 1.846213e-02	ci left: 5.548019e-02	ci right 5.651531e-02	k: 42557	n:760000
KS ci ratio: 1.170460e-01	ci left: 1.387411e-03	ci right 1.561161e-03	k: 1119	n:760000
SNTB1   760000 perm   401 sec   (1896 perm/sec)   p_kst 1.472368e-03   p_cons 5.599605e-02   p_joint 3.506579e-03

Joint ci ratio: 7.537808e-02	ci left: 3.368038e-03	ci right 3.633122e-03	k: 2694	n:770000
Cons ci ratio: 1.834703e-02	ci left: 5.545385e-02	ci right 5.648196e-02	k: 43094	n:770000
KS ci ratio: 1.163213e-01	ci left: 1.387044e-03	ci right 1.559598e-03	k: 1133	n:770000
SNTB1   770000 perm   410 sec   (1880 perm/sec)   p_kst 1.471429e-03   p_cons 5.596623e-02   p_joint 3.498701e-03

Joint ci ratio: 7.120527e-02	ci left: 3.732660e-03	ci right 4.009506e-03	k: 3018	n:780000
Cons ci ratio: 1.822919e-02	ci left: 5.545629e-02	ci right 5.647778e-02	k: 43653	n:780000
KS ci ratio: 1.154589e-01	ci left: 1.390425e-03	ci right 1.562030e-03	k: 1150	n:780000
SNTB1   780000 perm   418 sec   (1864 perm/sec)   p_kst 1.474359e-03   p_cons 5.596538e-02   p_joint 3.869231e-03

Joint ci ratio: 7.077298e-02	ci left: 3.731415e-03	ci right 4.006420e-03	k: 3055	n:790000
Cons ci ratio: 1.811013e-02	ci left: 5.547886e-02	ci right 5.649402e-02	k: 44228	n:790000
KS ci ratio: 1.148619e-01	ci left: 1.387577e-03	ci right 1.557884e-03	k: 1162	n:790000
SNTB1   790000 perm   427 sec   (1849 perm/sec)   p_kst 1.470886e-03   p_cons 5.598481e-02   p_joint 3.867089e-03

Joint ci ratio: 7.401758e-02	ci left: 3.364401e-03	ci right 3.624214e-03	k: 2794	n:800000
Cons ci ratio: 1.799442e-02	ci left: 5.549466e-02	ci right 5.650355e-02	k: 44798	n:800000
KS ci ratio: 1.141283e-01	ci left: 1.388445e-03	ci right 1.557698e-03	k: 1177	n:800000
SNTB1   800000 perm   436 sec   (1835 perm/sec)   p_kst 1.471250e-03   p_cons 5.599750e-02   p_joint 3.492500e-03

Joint ci ratio: 7.355845e-02	ci left: 3.365278e-03	ci right 3.623478e-03	k: 2829	n:810000
Cons ci ratio: 1.788196e-02	ci left: 5.550395e-02	ci right 5.650664e-02	k: 45363	n:810000
KS ci ratio: 1.135994e-01	ci left: 1.384497e-03	ci right 1.552434e-03	k: 1188	n:810000
SNTB1   810000 perm   445 sec   (1820 perm/sec)   p_kst 1.466667e-03   p_cons 5.600370e-02   p_joint 3.492593e-03

Joint ci ratio: 7.306938e-02	ci left: 3.369730e-03	ci right 3.626480e-03	k: 2867	n:820000
Cons ci ratio: 1.777752e-02	ci left: 5.547781e-02	ci right 5.647411e-02	k: 45899	n:820000
KS ci ratio: 1.130306e-01	ci left: 1.381832e-03	ci right 1.548551e-03	k: 1200	n:820000
SNTB1   820000 perm   454 sec   (1805 perm/sec)   p_kst 1.463415e-03   p_cons 5.597439e-02   p_joint 3.496341e-03

Joint ci ratio: 7.255236e-02	ci left: 3.377630e-03	ci right 3.633083e-03	k: 2908	n:830000
Cons ci ratio: 1.767206e-02	ci left: 5.546911e-02	ci right 5.645929e-02	k: 46449	n:830000
KS ci ratio: 1.119630e-01	ci left: 1.392115e-03	ci right 1.558383e-03	k: 1223	n:830000
SNTB1   830000 perm   463 sec   (1791 perm/sec)   p_kst 1.473494e-03   p_cons 5.596265e-02   p_joint 3.503614e-03

Joint ci ratio: 7.209523e-02	ci left: 3.380671e-03	ci right 3.634676e-03	k: 2945	n:840000
Cons ci ratio: 1.756194e-02	ci left: 5.549977e-02	ci right 5.648425e-02	k: 47032	n:840000
KS ci ratio: 1.111934e-01	ci left: 1.395216e-03	ci right 1.560633e-03	k: 1240	n:840000
SNTB1   840000 perm   473 sec   (1777 perm/sec)   p_kst 1.476190e-03   p_cons 5.599048e-02   p_joint 3.505952e-03

Joint ci ratio: 7.176745e-02	ci left: 3.372092e-03	ci right 3.624252e-03	k: 2972	n:850000
Cons ci ratio: 1.745850e-02	ci left: 5.550159e-02	ci right 5.648026e-02	k: 47591	n:850000
KS ci ratio: 1.105715e-01	ci left: 1.394815e-03	ci right 1.559200e-03	k: 1254	n:850000
SNTB1   850000 perm   482 sec   (1763 perm/sec)   p_kst 1.475294e-03   p_cons 5.598941e-02   p_joint 3.496471e-03

Joint ci ratio: 7.144410e-02	ci left: 3.363714e-03	ci right 3.614067e-03	k: 2999	n:860000
Cons ci ratio: 1.736165e-02	ci left: 5.547445e-02	ci right 5.644715e-02	k: 48125	n:860000
KS ci ratio: 1.098300e-01	ci left: 1.397819e-03	ci right 1.561382e-03	k: 1271	n:860000
SNTB1   860000 perm   493 sec   (1746 perm/sec)   p_kst 1.477907e-03   p_cons 5.595930e-02   p_joint 3.487209e-03

Joint ci ratio: 7.098403e-02	ci left: 3.369080e-03	ci right 3.618152e-03	k: 3038	n:870000
Cons ci ratio: 1.725907e-02	ci left: 5.549258e-02	ci right 5.645980e-02	k: 48698	n:870000
KS ci ratio: 1.091032e-01	ci left: 1.400758e-03	ci right 1.563510e-03	k: 1288	n:870000
SNTB1   870000 perm   502 sec   (1732 perm/sec)   p_kst 1.480460e-03   p_cons 5.597471e-02   p_joint 3.491954e-03

Joint ci ratio: 7.054423e-02	ci left: 3.373213e-03	ci right 3.620982e-03	k: 3076	n:880000
Cons ci ratio: 1.715810e-02	ci left: 5.551146e-02	ci right 5.647329e-02	k: 49272	n:880000
KS ci ratio: 1.083076e-01	ci left: 1.405844e-03	ci right 1.567920e-03	k: 1307	n:880000
SNTB1   880000 perm   512 sec   (1720 perm/sec)   p_kst 1.485227e-03   p_cons 5.599091e-02   p_joint 3.495455e-03

Joint ci ratio: 7.015772e-02	ci left: 3.372842e-03	ci right 3.619171e-03	k: 3110	n:890000
Cons ci ratio: 1.706124e-02	ci left: 5.551537e-02	ci right 5.647179e-02	k: 49833	n:890000
KS ci ratio: 1.077326e-01	ci left: 1.405353e-03	ci right 1.566458e-03	k: 1321	n:890000
SNTB1   890000 perm   521 sec   (1707 perm/sec)   p_kst 1.484270e-03   p_cons 5.599213e-02   p_joint 3.494382e-03

Joint ci ratio: 6.988908e-02	ci left: 3.361565e-03	ci right 3.606092e-03	k: 3134	n:900000
Cons ci ratio: 1.696012e-02	ci left: 5.555574e-02	ci right 5.650712e-02	k: 50427	n:900000
KS ci ratio: 1.073278e-01	ci left: 1.400550e-03	ci right 1.560463e-03	k: 1331	n:900000
SNTB1   900000 perm   531 sec   (1695 perm/sec)   p_kst 1.478889e-03   p_cons 5.603000e-02   p_joint 3.482222e-03

Joint ci ratio: 6.940339e-02	ci left: 3.372135e-03	ci right 3.615658e-03	k: 3178	n:910000
Cons ci ratio: 1.687041e-02	ci left: 5.553503e-02	ci right 5.648098e-02	k: 50966	n:910000
KS ci ratio: 1.064125e-01	ci left: 1.409759e-03	ci right 1.569265e-03	k: 1354	n:910000
SNTB1   910000 perm   541 sec   (1682 perm/sec)   p_kst 1.487912e-03   p_cons 5.600659e-02   p_joint 3.492308e-03

Joint ci ratio: 6.905680e-02	ci left: 3.369662e-03	ci right 3.611742e-03	k: 3210	n:920000
Cons ci ratio: 1.678107e-02	ci left: 5.552129e-02	ci right 5.646194e-02	k: 51511	n:920000
KS ci ratio: 1.059834e-01	ci left: 1.406075e-03	ci right 1.564482e-03	k: 1365	n:920000
SNTB1   920000 perm   551 sec   (1670 perm/sec)   p_kst 1.483696e-03   p_cons 5.599022e-02   p_joint 3.489130e-03

Joint ci ratio: 6.860929e-02	ci left: 3.377813e-03	ci right 3.618844e-03	k: 3252	n:930000
Cons ci ratio: 1.668652e-02	ci left: 5.554962e-02	ci right 5.648540e-02	k: 52095	n:930000
KS ci ratio: 1.051397e-01	ci left: 1.413987e-03	ci right 1.571939e-03	k: 1387	n:930000
SNTB1   930000 perm   561 sec   (1657 perm/sec)   p_kst 1.491398e-03   p_cons 5.601613e-02   p_joint 3.496774e-03

Joint ci ratio: 6.825356e-02	ci left: 3.377430e-03	ci right 3.617135e-03	k: 3286	n:940000
Cons ci ratio: 1.659188e-02	ci left: 5.558796e-02	ci right 5.651903e-02	k: 52689	n:940000
KS ci ratio: 1.046509e-01	ci left: 1.412412e-03	ci right 1.569409e-03	k: 1400	n:940000
SNTB1   940000 perm   571 sec   (1645 perm/sec)   p_kst 1.489362e-03   p_cons 5.605213e-02   p_joint 3.495745e-03

Joint ci ratio: 6.791358e-02	ci left: 3.376024e-03	ci right 3.614388e-03	k: 3319	n:950000
Cons ci ratio: 1.649801e-02	ci left: 5.563075e-02	ci right 5.655722e-02	k: 53288	n:950000
KS ci ratio: 1.039848e-01	ci left: 1.415997e-03	ci right 1.572331e-03	k: 1418	n:950000
SNTB1   950000 perm   581 sec   (1634 perm/sec)   p_kst 1.492632e-03   p_cons 5.609263e-02   p_joint 3.493684e-03

Joint ci ratio: 6.757862e-02	ci left: 3.374649e-03	ci right 3.611695e-03	k: 3352	n:960000
Cons ci ratio: 1.641395e-02	ci left: 5.561975e-02	ci right 5.654126e-02	k: 53836	n:960000
KS ci ratio: 1.035119e-01	ci left: 1.414438e-03	ci right 1.569845e-03	k: 1431	n:960000
SNTB1   960000 perm   592 sec   (1623 perm/sec)   p_kst 1.490625e-03   p_cons 5.607917e-02   p_joint 3.491667e-03

Joint ci ratio: 6.721869e-02	ci left: 3.376347e-03	ci right 3.612200e-03	k: 3388	n:970000
Cons ci ratio: 1.632909e-02	ci left: 5.562233e-02	ci right 5.653908e-02	k: 54397	n:970000
KS ci ratio: 1.029740e-01	ci left: 1.414920e-03	ci right 1.569524e-03	k: 1446	n:970000
SNTB1   970000 perm   602 sec   (1610 perm/sec)   p_kst 1.490722e-03   p_cons 5.607938e-02   p_joint 3.492784e-03

Joint ci ratio: 6.689386e-02	ci left: 3.375004e-03	ci right 3.609579e-03	k: 3421	n:980000
Cons ci ratio: 1.624710e-02	ci left: 5.561471e-02	ci right 5.652669e-02	k: 54948	n:980000
KS ci ratio: 1.025850e-01	ci left: 1.411418e-03	ci right 1.565022e-03	k: 1457	n:980000
SNTB1   980000 perm   613 sec   (1599 perm/sec)   p_kst 1.486735e-03   p_cons 5.606939e-02   p_joint 3.490816e-03

Joint ci ratio: 6.655437e-02	ci left: 3.375676e-03	ci right 3.609062e-03	k: 3456	n:990000
Cons ci ratio: 1.616556e-02	ci left: 5.561229e-02	ci right 5.651961e-02	k: 55504	n:990000
KS ci ratio: 1.020613e-01	ci left: 1.411925e-03	ci right 1.564753e-03	k: 1472	n:990000
SNTB1   990000 perm   623 sec   (1588 perm/sec)   p_kst 1.486869e-03   p_cons 5.606465e-02   p_joint 3.490909e-03

Joint ci ratio: 6.625808e-02	ci left: 3.372405e-03	ci right 3.604486e-03	k: 3487	n:1000000
Cons ci ratio: 1.607764e-02	ci left: 5.565973e-02	ci right 5.656284e-02	k: 56110	n:1000000
KS ci ratio: 1.016825e-01	ci left: 1.408526e-03	ci right 1.560385e-03	k: 1483	n:1000000
SNTB1   1000000 perm   634 sec   (1578 perm/sec)   p_kst 1.483000e-03   p_cons 5.611000e-02   p_joint 3.487000e-03

Joint ci ratio: 6.587187e-02	ci left: 3.378938e-03	ci right 3.610062e-03	k: 3528	n:1010000
Cons ci ratio: 1.600101e-02	ci left: 5.564115e-02	ci right 5.653962e-02	k: 56650	n:1010000
KS ci ratio: 1.011387e-01	ci left: 1.410020e-03	ci right 1.561179e-03	k: 1499	n:1010000
SNTB1   1010000 perm   645 sec   (1567 perm/sec)   p_kst 1.484158e-03   p_cons 5.608911e-02   p_joint 3.493069e-03

Joint ci ratio: 6.549232e-02	ci left: 3.385348e-03	ci right 3.615525e-03	k: 3569	n:1020000
Cons ci ratio: 1.592694e-02	ci left: 5.561318e-02	ci right 5.650699e-02	k: 57180	n:1020000
KS ci ratio: 1.004709e-01	ci left: 1.415310e-03	ci right 1.565975e-03	k: 1519	n:1020000
SNTB1   1020000 perm   655 sec   (1556 perm/sec)   p_kst 1.489216e-03   p_cons 5.605882e-02   p_joint 3.499020e-03

Joint ci ratio: 6.511022e-02	ci left: 3.392592e-03	ci right 3.621865e-03	k: 3611	n:1030000
Cons ci ratio: 1.585141e-02	ci left: 5.560220e-02	ci right 5.649156e-02	k: 57727	n:1030000
KS ci ratio: 9.971887e-02	ci left: 1.423340e-03	ci right 1.573660e-03	k: 1542	n:1030000
SNTB1   1030000 perm   666 sec   (1546 perm/sec)   p_kst 1.497087e-03   p_cons 5.604563e-02   p_joint 3.505825e-03

Outputting figure to mutsig2_images.part000000000163/SNTB1.2_1645_1030000_0.0014971_0.056046_0.0035058.png
                gene_name: SNTB1
               theta_stop: 0.100 
                    nperm: 1030000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.0035 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0036 

Current progress: 88 percent done.
SNW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
KS ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
SNW1   10000 perm   2 sec   (6635 perm/sec)   p_kst 5.815000e-01   p_cons 6.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNW1.2_1667_10000_0.5815_0.6463_1.png
                gene_name: SNW1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
Cons ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
KS ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
SNX1   10000 perm   2 sec   (6246 perm/sec)   p_kst 8.268000e-01   p_cons 3.643000e-01   p_joint 9.871000e-01

Outputting figure to mutsig2_images.part000000000163/SNX1.2_1629_10000_0.8268_0.3643_0.9871.png
                gene_name: SNX1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
SNX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
Cons ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
KS ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
SNX12   10000 perm   1 sec   (7523 perm/sec)   p_kst 9.454000e-01   p_cons 7.460000e-02   p_joint 8.318000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
KS ci ratio: 6.699079e-03	ci left: 9.415961e-01	ci right 9.479738e-01	k: 18897	n:20000
SNX12   20000 perm   3 sec   (6380 perm/sec)   p_kst 9.448500e-01   p_cons 7.490000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNX12.2_505_20000_0.94485_0.0749_1.png
                gene_name: SNX12
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SNX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
Cons ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
KS ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
SNX15   10000 perm   1 sec   (6732 perm/sec)   p_kst 9.730000e-01   p_cons 3.407000e-01   p_joint 7.348000e-01

Outputting figure to mutsig2_images.part000000000163/SNX15.2_1061_10000_0.973_0.3407_0.7348.png
                gene_name: SNX15
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 98 percent done.
SNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
Cons ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
KS ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
SNX2   10000 perm   2 sec   (6334 perm/sec)   p_kst 2.084000e-01   p_cons 8.214000e-01   p_joint 4.306000e-01

Outputting figure to mutsig2_images.part000000000163/SNX2.2_1620_10000_0.2084_0.8214_0.4306.png
                gene_name: SNX2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000163
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 163 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 4422567: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000164> was used as the working directory.
Started at Wed Oct 24 18:08:44 2012
Results reported at Wed Oct 24 18:50:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000164.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000164.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 164  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000164.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2596.48 sec.
    Max Memory :      5265 MB
    Max Swap   :      7748 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
164
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 164
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 164: processing genes 14748 - 14837
Calculating significance of each gene.
Using projection method.
14748	SNX21	6.540978e-01
14749	SNX22	1
14750	SNX24	1
14751	SNX25	4.302267e-01
14752	SNX27	9.149975e-01
14753	SNX29	1.299183e-01
14754	SNX3	1
14755	SNX30	6.856025e-01
14756	SNX31	1.137216e-02
14757	SNX32	4.007323e-01
14758	SNX33	9.393457e-01
14759	SNX4	6.089385e-01
14760	SNX5	8.641507e-01
14761	SNX6	1
14762	SNX7	8.041084e-01
14763	SNX8	7.625835e-01
14764	SNX9	5.999007e-01
14765	SOAT1	2.537345e-01
14766	SOAT2	1
14767	SOBP	8.211606e-01
14768	SOCS1	1
14769	SOCS2	1
14770	SOCS3	1
14771	SOCS4	7.618629e-01
14772	SOCS5	6.732376e-01
14773	SOCS6	8.972711e-01
14774	SOCS7	1
14775	SOD1	1
14776	SOD2	4.809965e-01
In gene SOD3 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 222     n = 1	mu =   6.02e-07
14777	SOD3	1.567605e-01
14778	SOHLH1	1
14779	SOHLH2	3.180352e-01
14780	SOLH	9.797968e-01
14781	SON	1
14782	SORBS1	8.280370e-01
14783	SORBS2	1
14784	SORBS3	9.744078e-01
14785	SORCS1	9.557305e-03
14786	SORCS2	5.147079e-01
14787	SORCS3	5.982569e-01
14788	SORD	6.240337e-01
14789	SORL1	9.998454e-01
14790	SORT1	1
14791	SOS1	3.729185e-01
14792	SOS2	6.020979e-01
14793	SOST	6.487837e-01
14794	SOSTDC1	1
14795	SOX1	1
14796	SOX10	7.099200e-01
14797	SOX11	2.467159e-01
14798	SOX12	1
14799	SOX13	8.651108e-01
14800	SOX14	3.847866e-01
14801	SOX15	1
14802	SOX17	5.579619e-01
14803	SOX18	1
14804	SOX2	1
14805	SOX21	4.629362e-01
14806	SOX3	1.000204e-01
14807	SOX30	7.190904e-01
14808	SOX4	1
14809	SOX5	2.978700e-02
14810	SOX6	3.194184e-01
14811	SOX7	6.734673e-01
14812	SOX8	5.634216e-01
14813	SOX9	4.751913e-01
14814	SP1	1
14815	SP100	9.555120e-01
14816	SP110	7.620521e-01
14817	SP140	9.902304e-01
14818	SP140L	4.739621e-01
14819	SP2	9.277384e-01
14820	SP3	4.939252e-01
14821	SP4	4.707559e-01
14822	SP5	1
14823	SP6	6.133206e-01
14824	SP7	4.762546e-01
14825	SP8	1
14826	SPA17	4.676360e-01
14827	SPACA1	4.180689e-02
14828	SPACA3	1.392483e-01
14829	SPACA4	3.506954e-01
14830	SPAG1	6.670919e-01
14831	SPAG11A	1.639186e-01
14832	SPAG11B	1
14833	SPAG16	9.222965e-01
14834	SPAG17	5.874617e-01
14835	SPAG4	7.460072e-01
14836	SPAG5	9.993888e-01
14837	SPAG6	9.320644e-01
Done

Running MutSig 2:
Scatter job 164: processing genes 14748 - 14837
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SORCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
Cons ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
SORCS1   10000 perm   3 sec   (3460 perm/sec)   p_kst 3.900000e-03   p_cons 5.511000e-01   p_joint 2.120000e-02

Joint ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
Cons ci ratio: 2.475082e-02	ci left: 5.494319e-01	ci right 5.632518e-01	k: 11127	n:20000
KS ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
SORCS1   20000 perm   8 sec   (2476 perm/sec)   p_kst 4.450000e-03   p_cons 5.563500e-01   p_joint 1.210000e-02

Joint ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
Cons ci ratio: 2.016236e-02	ci left: 5.518576e-01	ci right 5.631313e-01	k: 16725	n:30000
KS ci ratio: 3.353689e-01	ci left: 3.774267e-03	ci right 5.324092e-03	k: 135	n:30000
SORCS1   30000 perm   11 sec   (2658 perm/sec)   p_kst 4.500000e-03   p_cons 5.575000e-01   p_joint 1.856667e-02

Joint ci ratio: 2.080128e-01	ci left: 7.884339e-03	ci right 9.738027e-03	k: 351	n:40000
Cons ci ratio: 1.721141e-02	ci left: 5.597241e-01	ci right 5.694665e-01	k: 22584	n:40000
KS ci ratio: 2.859844e-01	ci left: 4.006968e-03	ci right 5.366478e-03	k: 186	n:40000
SORCS1   40000 perm   15 sec   (2744 perm/sec)   p_kst 4.650000e-03   p_cons 5.646000e-01   p_joint 8.775000e-03

Joint ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
Cons ci ratio: 1.545025e-02	ci left: 5.584586e-01	ci right 5.671741e-01	k: 28141	n:50000
KS ci ratio: 2.508538e-01	ci left: 4.250575e-03	ci right 5.487988e-03	k: 242	n:50000
SORCS1   50000 perm   18 sec   (2788 perm/sec)   p_kst 4.840000e-03   p_cons 5.628200e-01   p_joint 9.960000e-03

Joint ci ratio: 1.407272e-01	ci left: 1.186757e-02	ci right 1.368001e-02	k: 765	n:60000
Cons ci ratio: 1.415111e-02	ci left: 5.572014e-01	ci right 5.651593e-01	k: 33671	n:60000
KS ci ratio: 2.253757e-01	ci left: 4.451343e-03	ci right 5.597340e-03	k: 300	n:60000
SORCS1   60000 perm   21 sec   (2801 perm/sec)   p_kst 5.000000e-03   p_cons 5.611833e-01   p_joint 1.275000e-02

Joint ci ratio: 1.459512e-01	ci left: 9.455103e-03	ci right 1.095734e-02	k: 713	n:70000
Cons ci ratio: 1.310744e-02	ci left: 5.572712e-01	ci right 5.646380e-01	k: 39267	n:70000
KS ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
SORCS1   70000 perm   25 sec   (2808 perm/sec)   p_kst 5.100000e-03   p_cons 5.609571e-01   p_joint 1.018571e-02

Joint ci ratio: 1.158378e-01	ci left: 1.329439e-02	ci right 1.494112e-02	k: 1128	n:80000
Cons ci ratio: 1.223902e-02	ci left: 5.583909e-01	ci right 5.652796e-01	k: 44947	n:80000
KS ci ratio: 1.942915e-01	ci left: 4.570580e-03	ci right 5.565833e-03	k: 404	n:80000
SORCS1   80000 perm   29 sec   (2807 perm/sec)   p_kst 5.050000e-03   p_cons 5.618375e-01   p_joint 1.410000e-02

Joint ci ratio: 1.160340e-01	ci left: 1.179513e-02	ci right 1.325877e-02	k: 1126	n:90000
Cons ci ratio: 1.155767e-02	ci left: 5.577948e-01	ci right 5.642902e-01	k: 50494	n:90000
KS ci ratio: 1.839167e-01	ci left: 4.560249e-03	ci right 5.494315e-03	k: 451	n:90000
SORCS1   90000 perm   32 sec   (2797 perm/sec)   p_kst 5.011111e-03   p_cons 5.610444e-01   p_joint 1.251111e-02

Joint ci ratio: 1.146252e-01	ci left: 1.089695e-02	ci right 1.223160e-02	k: 1155	n:100000
Cons ci ratio: 1.087746e-02	ci left: 5.618905e-01	ci right 5.680458e-01	k: 56497	n:100000
KS ci ratio: 1.752206e-01	ci left: 4.543552e-03	ci right 5.425536e-03	k: 497	n:100000
SORCS1   100000 perm   36 sec   (2768 perm/sec)   p_kst 4.970000e-03   p_cons 5.649700e-01   p_joint 1.155000e-02

Joint ci ratio: 1.036853e-01	ci left: 1.216175e-02	ci right 1.350049e-02	k: 1410	n:110000
Cons ci ratio: 1.036661e-02	ci left: 5.622551e-01	ci right 5.681232e-01	k: 62171	n:110000
KS ci ratio: 1.687463e-01	ci left: 4.469774e-03	ci right 5.302115e-03	k: 536	n:110000
SORCS1   110000 perm   40 sec   (2762 perm/sec)   p_kst 4.872727e-03   p_cons 5.651909e-01   p_joint 1.281818e-02

Joint ci ratio: 1.052229e-01	ci left: 1.083136e-02	ci right 1.204242e-02	k: 1371	n:120000
Cons ci ratio: 9.929302e-03	ci left: 5.621810e-01	ci right 5.677992e-01	k: 67799	n:120000
KS ci ratio: 1.652626e-01	ci left: 4.280914e-03	ci right 5.059988e-03	k: 559	n:120000
SORCS1   120000 perm   44 sec   (2753 perm/sec)   p_kst 4.658333e-03   p_cons 5.649917e-01   p_joint 1.142500e-02

Joint ci ratio: 1.042380e-01	ci left: 1.020026e-02	ci right 1.132942e-02	k: 1398	n:130000
Cons ci ratio: 9.541403e-03	ci left: 5.622074e-01	ci right 5.676050e-01	k: 73438	n:130000
KS ci ratio: 1.584733e-01	ci left: 4.313277e-03	ci right 5.062926e-03	k: 608	n:130000
SORCS1   130000 perm   47 sec   (2739 perm/sec)   p_kst 4.676923e-03   p_cons 5.649077e-01   p_joint 1.075385e-02

Joint ci ratio: 9.655673e-02	ci left: 1.107356e-02	ci right 1.220395e-02	k: 1628	n:140000
Cons ci ratio: 9.194342e-03	ci left: 5.623053e-01	ci right 5.675063e-01	k: 79087	n:140000
KS ci ratio: 1.511929e-01	ci left: 4.417177e-03	ci right 5.146424e-03	k: 668	n:140000
SORCS1   140000 perm   51 sec   (2724 perm/sec)   p_kst 4.771429e-03   p_cons 5.649071e-01   p_joint 1.162857e-02

Joint ci ratio: 9.559114e-02	ci left: 1.055641e-02	ci right 1.162262e-02	k: 1662	n:150000
Cons ci ratio: 8.881026e-03	ci left: 5.624799e-01	ci right 5.675042e-01	k: 84749	n:150000
KS ci ratio: 1.458401e-01	ci left: 4.443651e-03	ci right 5.149033e-03	k: 718	n:150000
SORCS1   150000 perm   55 sec   (2706 perm/sec)   p_kst 4.786667e-03   p_cons 5.649933e-01   p_joint 1.108000e-02

Joint ci ratio: 9.420386e-02	ci left: 1.020162e-02	ci right 1.121622e-02	k: 1712	n:160000
Cons ci ratio: 8.599014e-03	ci left: 5.625603e-01	ci right 5.674248e-01	k: 90399	n:160000
KS ci ratio: 1.415743e-01	ci left: 4.431034e-03	ci right 5.112102e-03	k: 762	n:160000
SORCS1   160000 perm   60 sec   (2685 perm/sec)   p_kst 4.762500e-03   p_cons 5.649937e-01   p_joint 1.070000e-02

Joint ci ratio: 8.876761e-02	ci left: 1.083747e-02	ci right 1.184988e-02	k: 1927	n:170000
Cons ci ratio: 8.344862e-03	ci left: 5.624804e-01	ci right 5.671997e-01	k: 96023	n:170000
KS ci ratio: 1.375766e-01	ci left: 4.425847e-03	ci right 5.085335e-03	k: 807	n:170000
SORCS1   170000 perm   64 sec   (2663 perm/sec)   p_kst 4.747059e-03   p_cons 5.648412e-01   p_joint 1.133529e-02

Joint ci ratio: 8.783389e-02	ci left: 1.046348e-02	ci right 1.143014e-02	k: 1969	n:180000
Cons ci ratio: 8.104933e-03	ci left: 5.628394e-01	ci right 5.674252e-01	k: 101724	n:180000
KS ci ratio: 1.341367e-01	ci left: 4.405366e-03	ci right 5.044079e-03	k: 849	n:180000
SORCS1   180000 perm   68 sec   (2643 perm/sec)   p_kst 4.716667e-03   p_cons 5.651333e-01   p_joint 1.093889e-02

Joint ci ratio: 8.388359e-02	ci left: 1.088625e-02	ci right 1.184453e-02	k: 2158	n:190000
Cons ci ratio: 7.884909e-03	ci left: 5.631411e-01	ci right 5.676042e-01	k: 107421	n:190000
KS ci ratio: 1.302838e-01	ci left: 4.433053e-03	ci right 5.055890e-03	k: 900	n:190000
SORCS1   190000 perm   72 sec   (2622 perm/sec)   p_kst 4.736842e-03   p_cons 5.653737e-01   p_joint 1.135789e-02

Joint ci ratio: 8.271529e-02	ci left: 1.064543e-02	ci right 1.156882e-02	k: 2220	n:200000
Cons ci ratio: 7.688603e-03	ci left: 5.629839e-01	ci right 5.673342e-01	k: 113032	n:200000
KS ci ratio: 1.270133e-01	ci left: 4.438838e-03	ci right 5.045653e-03	k: 947	n:200000
SORCS1   200000 perm   77 sec   (2602 perm/sec)   p_kst 4.735000e-03   p_cons 5.651600e-01   p_joint 1.110000e-02

Joint ci ratio: 7.894463e-02	ci left: 1.114640e-02	ci right 1.206715e-02	k: 2436	n:210000
Cons ci ratio: 7.504008e-03	ci left: 5.629907e-01	ci right 5.672360e-01	k: 118674	n:210000
KS ci ratio: 1.237277e-01	ci left: 4.462709e-03	ci right 5.055850e-03	k: 998	n:210000
SORCS1   210000 perm   81 sec   (2580 perm/sec)   p_kst 4.752381e-03   p_cons 5.651143e-01   p_joint 1.160000e-02

Joint ci ratio: 7.716089e-02	ci left: 1.114782e-02	ci right 1.204694e-02	k: 2550	n:220000
Cons ci ratio: 7.331559e-03	ci left: 5.630344e-01	ci right 5.671820e-01	k: 124324	n:220000
KS ci ratio: 1.210908e-01	ci left: 4.453734e-03	ci right 5.032161e-03	k: 1042	n:220000
SORCS1   220000 perm   86 sec   (2548 perm/sec)   p_kst 4.736364e-03   p_cons 5.651091e-01   p_joint 1.159091e-02

Joint ci ratio: 7.431676e-02	ci left: 1.150777e-02	ci right 1.240024e-02	k: 2748	n:230000
Cons ci ratio: 7.173648e-03	ci left: 5.628579e-01	ci right 5.669144e-01	k: 129924	n:230000
KS ci ratio: 1.145070e-01	ci left: 4.779173e-03	ci right 5.363841e-03	k: 1165	n:230000
SORCS1   230000 perm   91 sec   (2527 perm/sec)   p_kst 5.065217e-03   p_cons 5.648870e-01   p_joint 1.194783e-02

Joint ci ratio: 7.265623e-02	ci left: 1.154773e-02	ci right 1.242244e-02	k: 2875	n:240000
Cons ci ratio: 7.018852e-03	ci left: 5.631638e-01	ci right 5.671346e-01	k: 135636	n:240000
KS ci ratio: 1.116678e-01	ci left: 4.822976e-03	ci right 5.397409e-03	k: 1225	n:240000
SORCS1   240000 perm   96 sec   (2506 perm/sec)   p_kst 5.104167e-03   p_cons 5.651500e-01   p_joint 1.197917e-02

Joint ci ratio: 7.412133e-02	ci left: 1.065372e-02	ci right 1.147768e-02	k: 2765	n:250000
Cons ci ratio: 6.876176e-03	ci left: 5.632660e-01	ci right 5.671565e-01	k: 141303	n:250000
KS ci ratio: 1.091150e-01	ci left: 4.855656e-03	ci right 5.419911e-03	k: 1283	n:250000
SORCS1   250000 perm   100 sec   (2488 perm/sec)   p_kst 5.132000e-03   p_cons 5.652120e-01   p_joint 1.106000e-02

Joint ci ratio: 6.976810e-02	ci left: 1.157743e-02	ci right 1.241812e-02	k: 3118	n:260000
Cons ci ratio: 6.743392e-03	ci left: 5.632495e-01	ci right 5.670644e-01	k: 146941	n:260000
KS ci ratio: 1.074565e-01	ci left: 4.818574e-03	ci right 5.369470e-03	k: 1323	n:260000
SORCS1   260000 perm   105 sec   (2468 perm/sec)   p_kst 5.088462e-03   p_cons 5.651577e-01   p_joint 1.199231e-02

Joint ci ratio: 7.040296e-02	ci left: 1.095202e-02	ci right 1.175482e-02	k: 3064	n:270000
Cons ci ratio: 6.619810e-03	ci left: 5.631015e-01	ci right 5.668452e-01	k: 152543	n:270000
KS ci ratio: 1.054448e-01	ci left: 4.823969e-03	ci right 5.364517e-03	k: 1374	n:270000
SORCS1   270000 perm   110 sec   (2449 perm/sec)   p_kst 5.088889e-03   p_cons 5.649741e-01   p_joint 1.134815e-02

Joint ci ratio: 6.532672e-02	ci left: 1.228148e-02	ci right 1.311437e-02	k: 3554	n:280000
Cons ci ratio: 6.498057e-03	ci left: 5.633221e-01	ci right 5.669980e-01	k: 158245	n:280000
KS ci ratio: 1.037984e-01	ci left: 4.804712e-03	ci right 5.334183e-03	k: 1418	n:280000
SORCS1   280000 perm   115 sec   (2431 perm/sec)   p_kst 5.064286e-03   p_cons 5.651607e-01   p_joint 1.269286e-02

Joint ci ratio: 6.718285e-02	ci left: 1.121345e-02	ci right 1.199636e-02	k: 3364	n:290000
Cons ci ratio: 6.383858e-03	ci left: 5.634451e-01	ci right 5.670570e-01	k: 163923	n:290000
KS ci ratio: 1.037708e-01	ci left: 4.642371e-03	ci right 5.153807e-03	k: 1419	n:290000
SORCS1   290000 perm   120 sec   (2413 perm/sec)   p_kst 4.893103e-03   p_cons 5.652517e-01   p_joint 1.160000e-02

Joint ci ratio: 6.641199e-02	ci left: 1.109858e-02	ci right 1.186423e-02	k: 3443	n:300000
Cons ci ratio: 6.276283e-03	ci left: 5.634972e-01	ci right 5.670482e-01	k: 169582	n:300000
KS ci ratio: 1.021653e-01	ci left: 4.633761e-03	ci right 5.135877e-03	k: 1464	n:300000
SORCS1   300000 perm   126 sec   (2390 perm/sec)   p_kst 4.880000e-03   p_cons 5.652733e-01   p_joint 1.147667e-02

Joint ci ratio: 6.110904e-02	ci left: 1.269951e-02	ci right 1.350318e-02	k: 4060	n:310000
Cons ci ratio: 6.375886e-03	ci left: 5.476626e-01	ci right 5.511688e-01	k: 170319	n:310000
KS ci ratio: 1.006992e-01	ci left: 4.619474e-03	ci right 5.112433e-03	k: 1507	n:310000
SORCS1   310000 perm   131 sec   (2368 perm/sec)   p_kst 4.861290e-03   p_cons 5.494161e-01   p_joint 1.309677e-02

Joint ci ratio: 7.072283e-02	ci left: 9.172930e-03	ci right 9.848497e-03	k: 3042	n:320000
Cons ci ratio: 5.794009e-03	ci left: 5.868395e-01	ci right 5.902526e-01	k: 188335	n:320000
KS ci ratio: 9.906993e-02	ci left: 4.627463e-03	ci right 5.112820e-03	k: 1557	n:320000
SORCS1   320000 perm   136 sec   (2345 perm/sec)   p_kst 4.865625e-03   p_cons 5.885469e-01   p_joint 9.506250e-03

Outputting figure to mutsig2_images.part000000000164/SORCS1.36_3845_320000_0.0048656_0.58855_0.0095063.png
                gene_name: SORCS1
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.0049 
        ci_ks_bounds_left: 0.0046 
       ci_ks_bounds_right: 0.0051 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.0095 
     ci_joint_bounds_left: 0.0092 
    ci_joint_bounds_right: 0.0098 

Current progress: 2 percent done.
SORCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
SORCS3   10000 perm   3 sec   (3838 perm/sec)   p_kst 2.600000e-03   p_cons 1.072000e-01   p_joint 9.200000e-03

Joint ci ratio: 3.177907e-01	ci left: 6.351314e-03	ci right 8.795126e-03	k: 150	n:20000
Cons ci ratio: 8.026407e-02	ci left: 1.022572e-01	ci right 1.108575e-01	k: 2130	n:20000
KS ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
SORCS3   20000 perm   6 sec   (3558 perm/sec)   p_kst 2.750000e-03   p_cons 1.065000e-01   p_joint 7.500000e-03

Joint ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
Cons ci ratio: 6.581842e-02	ci left: 1.022425e-01	ci right 1.092340e-01	k: 3171	n:30000
KS ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
SORCS3   30000 perm   9 sec   (3439 perm/sec)   p_kst 2.333333e-03   p_cons 1.057000e-01   p_joint 4.966667e-03

Joint ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
Cons ci ratio: 5.868538e-02	ci left: 9.739740e-02	ci right 1.033108e-01	k: 4013	n:40000
KS ci ratio: 4.127340e-01	ci left: 1.787227e-03	ci right 2.737351e-03	k: 89	n:40000
SORCS3   40000 perm   12 sec   (3361 perm/sec)   p_kst 2.225000e-03   p_cons 1.003250e-01   p_joint 1.875000e-03

Joint ci ratio: 4.248179e-01	ci left: 1.340248e-03	ci right 2.079538e-03	k: 84	n:50000
Cons ci ratio: 5.249281e-02	ci left: 9.769995e-02	ci right 1.029866e-01	k: 5016	n:50000
KS ci ratio: 3.767908e-01	ci left: 1.754103e-03	ci right 2.585394e-03	k: 107	n:50000
SORCS3   50000 perm   15 sec   (3299 perm/sec)   p_kst 2.140000e-03   p_cons 1.003200e-01   p_joint 1.680000e-03

Joint ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
Cons ci ratio: 4.831447e-02	ci left: 9.647297e-02	ci right 1.012659e-01	k: 5931	n:60000
KS ci ratio: 3.516595e-01	ci left: 1.704031e-03	ci right 2.445456e-03	k: 123	n:60000
SORCS3   60000 perm   19 sec   (3242 perm/sec)   p_kst 2.050000e-03   p_cons 9.885000e-02   p_joint 1.633333e-03

Joint ci ratio: 4.084167e-01	ci left: 1.046804e-03	ci right 1.595876e-03	k: 91	n:70000
Cons ci ratio: 4.477603e-02	ci left: 9.647174e-02	ci right 1.009044e-01	k: 6907	n:70000
KS ci ratio: 3.370520e-01	ci left: 1.604141e-03	ci right 2.266808e-03	k: 134	n:70000
SORCS3   70000 perm   22 sec   (3194 perm/sec)   p_kst 1.914286e-03   p_cons 9.867143e-02   p_joint 1.300000e-03

Joint ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
Cons ci ratio: 4.182793e-02	ci left: 9.685205e-02	ci right 1.010021e-01	k: 7913	n:80000
KS ci ratio: 3.230170e-01	ci left: 1.541191e-03	ci right 2.145853e-03	k: 146	n:80000
SORCS3   80000 perm   25 sec   (3150 perm/sec)   p_kst 1.825000e-03   p_cons 9.891250e-02   p_joint 1.262500e-03

Joint ci ratio: 3.805177e-01	ci left: 9.543138e-04	ci right 1.412148e-03	k: 105	n:90000
Cons ci ratio: 3.938241e-02	ci left: 9.721035e-02	ci right 1.011266e-01	k: 8924	n:90000
KS ci ratio: 3.125753e-01	ci left: 1.472190e-03	ci right 2.027382e-03	k: 156	n:90000
SORCS3   90000 perm   29 sec   (3107 perm/sec)   p_kst 1.733333e-03   p_cons 9.915556e-02   p_joint 1.166667e-03

Joint ci ratio: 2.177610e-01	ci left: 2.878341e-03	ci right 3.590955e-03	k: 322	n:100000
Cons ci ratio: 3.978980e-02	ci left: 8.670697e-02	ci right 9.023695e-02	k: 8846	n:100000
KS ci ratio: 3.136047e-01	ci left: 1.315739e-03	ci right 1.813889e-03	k: 155	n:100000
SORCS3   100000 perm   33 sec   (3068 perm/sec)   p_kst 1.550000e-03   p_cons 8.846000e-02   p_joint 3.220000e-03

Joint ci ratio: 2.091983e-01	ci left: 2.849004e-03	ci right 3.523066e-03	k: 349	n:110000
Cons ci ratio: 3.785856e-02	ci left: 8.712532e-02	ci right 9.049640e-02	k: 9768	n:110000
KS ci ratio: 2.887431e-01	ci left: 1.431483e-03	ci right 1.922663e-03	k: 183	n:110000
SORCS3   110000 perm   36 sec   (3029 perm/sec)   p_kst 1.663636e-03   p_cons 8.880000e-02   p_joint 3.172727e-03

Joint ci ratio: 2.116662e-01	ci left: 2.548390e-03	ci right 3.159362e-03	k: 341	n:120000
Cons ci ratio: 3.620972e-02	ci left: 8.736166e-02	ci right 9.059157e-02	k: 10676	n:120000
KS ci ratio: 2.683544e-01	ci left: 1.537013e-03	ci right 2.020908e-03	k: 212	n:120000
SORCS3   120000 perm   40 sec   (2992 perm/sec)   p_kst 1.766667e-03   p_cons 8.896667e-02   p_joint 2.841667e-03

Joint ci ratio: 2.066030e-01	ci left: 2.476272e-03	ci right 3.053955e-03	k: 358	n:130000
Cons ci ratio: 3.480198e-02	ci left: 8.736590e-02	ci right 9.046785e-02	k: 11558	n:130000
KS ci ratio: 2.582474e-01	ci left: 1.540922e-03	ci right 2.004832e-03	k: 229	n:130000
SORCS3   130000 perm   44 sec   (2956 perm/sec)   p_kst 1.761538e-03   p_cons 8.890769e-02   p_joint 2.753846e-03

Joint ci ratio: 1.598233e-01	ci left: 3.936540e-03	ci right 4.627097e-03	k: 598	n:140000
Cons ci ratio: 3.075093e-02	ci left: 1.023985e-01	ci right 1.056036e-01	k: 14559	n:140000
KS ci ratio: 2.481980e-01	ci left: 1.557963e-03	ci right 2.005934e-03	k: 248	n:140000
SORCS3   140000 perm   48 sec   (2920 perm/sec)   p_kst 1.771429e-03   p_cons 1.039929e-01   p_joint 4.271429e-03

Joint ci ratio: 1.557236e-01	ci left: 3.879006e-03	ci right 4.540384e-03	k: 630	n:150000
Cons ci ratio: 2.968169e-02	ci left: 1.026185e-01	ci right 1.057168e-01	k: 15624	n:150000
KS ci ratio: 2.383480e-01	ci left: 1.585570e-03	ci right 2.020716e-03	k: 269	n:150000
SORCS3   150000 perm   52 sec   (2887 perm/sec)   p_kst 1.793333e-03   p_cons 1.041600e-01   p_joint 4.200000e-03

Joint ci ratio: 1.627552e-01	ci left: 3.318432e-03	ci right 3.912278e-03	k: 577	n:160000
Cons ci ratio: 2.878998e-02	ci left: 1.023406e-01	ci right 1.053362e-01	k: 16613	n:160000
KS ci ratio: 2.328129e-01	ci left: 1.562925e-03	ci right 1.980461e-03	k: 282	n:160000
SORCS3   160000 perm   56 sec   (2855 perm/sec)   p_kst 1.762500e-03   p_cons 1.038312e-01   p_joint 3.606250e-03

Joint ci ratio: 1.706550e-01	ci left: 2.830041e-03	ci right 3.363599e-03	k: 525	n:170000
Cons ci ratio: 2.793160e-02	ci left: 1.023774e-01	ci right 1.052832e-01	k: 17650	n:170000
KS ci ratio: 2.276463e-01	ci left: 1.543047e-03	ci right 1.944840e-03	k: 295	n:170000
SORCS3   170000 perm   60 sec   (2823 perm/sec)   p_kst 1.735294e-03   p_cons 1.038235e-01   p_joint 3.088235e-03

Joint ci ratio: 1.650964e-01	ci left: 2.864419e-03	ci right 3.385121e-03	k: 561	n:180000
Cons ci ratio: 2.715542e-02	ci left: 1.023449e-01	ci right 1.051679e-01	k: 18675	n:180000
KS ci ratio: 2.203230e-01	ci left: 1.562202e-03	ci right 1.954124e-03	k: 315	n:180000
SORCS3   180000 perm   64 sec   (2792 perm/sec)   p_kst 1.750000e-03   p_cons 1.037500e-01   p_joint 3.116667e-03

Joint ci ratio: 1.633699e-01	ci left: 2.774211e-03	ci right 3.272722e-03	k: 573	n:190000
Cons ci ratio: 2.642632e-02	ci left: 1.024163e-01	ci right 1.051642e-01	k: 19719	n:190000
KS ci ratio: 2.146258e-01	ci left: 1.564582e-03	ci right 1.945615e-03	k: 332	n:190000
SORCS3   190000 perm   69 sec   (2762 perm/sec)   p_kst 1.747368e-03   p_cons 1.037842e-01   p_joint 3.015789e-03

Joint ci ratio: 1.614199e-01	ci left: 2.702648e-03	ci right 3.181939e-03	k: 587	n:200000
Cons ci ratio: 2.576336e-02	ci left: 1.024069e-01	ci right 1.050846e-01	k: 20748	n:200000
KS ci ratio: 2.090499e-01	ci left: 1.571579e-03	ci right 1.943101e-03	k: 350	n:200000
SORCS3   200000 perm   73 sec   (2733 perm/sec)   p_kst 1.750000e-03   p_cons 1.037400e-01   p_joint 2.935000e-03

Joint ci ratio: 1.625438e-01	ci left: 2.537381e-03	ci right 2.990803e-03	k: 579	n:210000
Cons ci ratio: 2.512539e-02	ci left: 1.025649e-01	ci right 1.051794e-01	k: 21812	n:210000
KS ci ratio: 2.041645e-01	ci left: 1.573507e-03	ci right 1.935706e-03	k: 367	n:210000
SORCS3   210000 perm   78 sec   (2704 perm/sec)   p_kst 1.747619e-03   p_cons 1.038667e-01   p_joint 2.757143e-03

Joint ci ratio: 1.594155e-01	ci left: 2.522378e-03	ci right 2.963613e-03	k: 602	n:220000
Cons ci ratio: 2.456014e-02	ci left: 1.025013e-01	ci right 1.050546e-01	k: 22830	n:220000
KS ci ratio: 1.993472e-01	ci left: 1.579670e-03	ci right 1.933665e-03	k: 385	n:220000
SORCS3   220000 perm   82 sec   (2674 perm/sec)   p_kst 1.750000e-03   p_cons 1.037727e-01   p_joint 2.736364e-03

Joint ci ratio: 1.694376e-01	ci left: 2.125005e-03	ci right 2.522486e-03	k: 533	n:230000
Cons ci ratio: 2.401792e-02	ci left: 1.025477e-01	ci right 1.050449e-01	k: 23872	n:230000
KS ci ratio: 1.943741e-01	ci left: 1.593660e-03	ci right 1.940828e-03	k: 405	n:230000
SORCS3   230000 perm   87 sec   (2648 perm/sec)   p_kst 1.760870e-03   p_cons 1.037913e-01   p_joint 2.317391e-03

Joint ci ratio: 1.717167e-01	ci left: 1.980608e-03	ci right 2.356577e-03	k: 519	n:240000
Cons ci ratio: 2.321385e-02	ci left: 1.049618e-01	ci right 1.074311e-01	k: 25486	n:240000
KS ci ratio: 1.915660e-01	ci left: 1.574841e-03	ci right 1.912375e-03	k: 417	n:240000
SORCS3   240000 perm   92 sec   (2621 perm/sec)   p_kst 1.737500e-03   p_cons 1.061917e-01   p_joint 2.162500e-03

Joint ci ratio: 1.678853e-01	ci left: 1.993305e-03	ci right 2.362389e-03	k: 543	n:250000
Cons ci ratio: 2.274482e-02	ci left: 1.049869e-01	ci right 1.074062e-01	k: 26548	n:250000
KS ci ratio: 1.882196e-01	ci left: 1.568994e-03	ci right 1.898729e-03	k: 432	n:250000
SORCS3   250000 perm   96 sec   (2596 perm/sec)   p_kst 1.728000e-03   p_cons 1.061920e-01   p_joint 2.172000e-03

Joint ci ratio: 1.689854e-01	ci left: 1.890843e-03	ci right 2.243482e-03	k: 536	n:260000
Cons ci ratio: 2.229724e-02	ci left: 1.050603e-01	ci right 1.074331e-01	k: 27623	n:260000
KS ci ratio: 1.862965e-01	ci left: 1.541639e-03	ci right 1.861940e-03	k: 441	n:260000
SORCS3   260000 perm   101 sec   (2572 perm/sec)   p_kst 1.696154e-03   p_cons 1.062423e-01   p_joint 2.061538e-03

Joint ci ratio: 1.683647e-01	ci left: 1.834996e-03	ci right 2.175835e-03	k: 540	n:270000
Cons ci ratio: 2.185975e-02	ci left: 1.052614e-01	ci right 1.075915e-01	k: 28734	n:270000
KS ci ratio: 1.832143e-01	ci left: 1.537527e-03	ci right 1.851102e-03	k: 456	n:270000
SORCS3   270000 perm   106 sec   (2548 perm/sec)   p_kst 1.688889e-03   p_cons 1.064222e-01   p_joint 2.000000e-03

Joint ci ratio: 1.691558e-01	ci left: 1.752351e-03	ci right 2.079524e-03	k: 535	n:280000
Cons ci ratio: 2.145548e-02	ci left: 1.053739e-01	ci right 1.076628e-01	k: 29824	n:280000
KS ci ratio: 1.795198e-01	ci left: 1.547393e-03	ci right 1.855925e-03	k: 475	n:280000
SORCS3   280000 perm   111 sec   (2524 perm/sec)   p_kst 1.696429e-03   p_cons 1.065143e-01   p_joint 1.910714e-03

Joint ci ratio: 1.295285e-01	ci left: 2.944302e-03	ci right 3.355382e-03	k: 912	n:290000
Cons ci ratio: 2.106331e-02	ci left: 1.055648e-01	ci right 1.078154e-01	k: 30939	n:290000
KS ci ratio: 1.755082e-01	ci left: 1.566528e-03	ci right 1.871155e-03	k: 497	n:290000
SORCS3   290000 perm   116 sec   (2499 perm/sec)   p_kst 1.713793e-03   p_cons 1.066862e-01   p_joint 3.144828e-03

Joint ci ratio: 1.317240e-01	ci left: 2.749408e-03	ci right 3.140292e-03	k: 882	n:300000
Cons ci ratio: 2.069260e-02	ci left: 1.057367e-01	ci right 1.079509e-01	k: 32052	n:300000
KS ci ratio: 1.729239e-01	ci left: 1.562129e-03	ci right 1.860962e-03	k: 512	n:300000
SORCS3   300000 perm   121 sec   (2476 perm/sec)   p_kst 1.706667e-03   p_cons 1.068400e-01   p_joint 2.940000e-03

Joint ci ratio: 1.328669e-01	ci left: 2.613919e-03	ci right 2.989020e-03	k: 867	n:310000
Cons ci ratio: 2.035523e-02	ci left: 1.057630e-01	ci right 1.079411e-01	k: 33123	n:310000
KS ci ratio: 1.690136e-01	ci left: 1.585847e-03	ci right 1.881657e-03	k: 536	n:310000
SORCS3   310000 perm   128 sec   (2422 perm/sec)   p_kst 1.729032e-03   p_cons 1.068484e-01   p_joint 2.796774e-03

Joint ci ratio: 1.301206e-01	ci left: 2.644059e-03	ci right 3.015036e-03	k: 904	n:320000
Cons ci ratio: 2.003318e-02	ci left: 1.057941e-01	ci right 1.079380e-01	k: 34196	n:320000
KS ci ratio: 1.659509e-01	ci left: 1.596170e-03	ci right 1.887972e-03	k: 556	n:320000
SORCS3   320000 perm   133 sec   (2401 perm/sec)   p_kst 1.737500e-03   p_cons 1.068625e-01   p_joint 2.825000e-03

Joint ci ratio: 1.306338e-01	ci left: 2.543407e-03	ci right 2.901778e-03	k: 897	n:330000
Cons ci ratio: 1.973285e-02	ci left: 1.057572e-01	ci right 1.078679e-01	k: 35247	n:330000
KS ci ratio: 1.637611e-01	ci left: 1.591380e-03	ci right 1.878089e-03	k: 571	n:330000
SORCS3   330000 perm   139 sec   (2380 perm/sec)   p_kst 1.730303e-03   p_cons 1.068091e-01   p_joint 2.718182e-03

Joint ci ratio: 1.306390e-01	ci left: 2.468594e-03	ci right 2.816439e-03	k: 897	n:340000
Cons ci ratio: 1.943604e-02	ci left: 1.058164e-01	ci right 1.078962e-01	k: 36330	n:340000
KS ci ratio: 1.622103e-01	ci left: 1.575607e-03	ci right 1.856524e-03	k: 582	n:340000
SORCS3   340000 perm   144 sec   (2355 perm/sec)   p_kst 1.711765e-03   p_cons 1.068529e-01   p_joint 2.638235e-03

Joint ci ratio: 1.306440e-01	ci left: 2.398057e-03	ci right 2.735977e-03	k: 897	n:350000
Cons ci ratio: 1.914449e-02	ci left: 1.059493e-01	ci right 1.080001e-01	k: 37440	n:350000
KS ci ratio: 1.592326e-01	ci left: 1.590920e-03	ci right 1.868863e-03	k: 604	n:350000
SORCS3   350000 perm   150 sec   (2335 perm/sec)   p_kst 1.725714e-03   p_cons 1.069714e-01   p_joint 2.562857e-03

Joint ci ratio: 1.294262e-01	ci left: 2.377129e-03	ci right 2.708737e-03	k: 914	n:360000
Cons ci ratio: 1.888214e-02	ci left: 1.059090e-01	ci right 1.079306e-01	k: 38490	n:360000
KS ci ratio: 1.570416e-01	ci left: 1.592081e-03	ci right 1.866039e-03	k: 621	n:360000
SORCS3   360000 perm   155 sec   (2315 perm/sec)   p_kst 1.725000e-03   p_cons 1.069167e-01   p_joint 2.538889e-03

Joint ci ratio: 1.307261e-01	ci left: 2.265808e-03	ci right 2.585307e-03	k: 896	n:370000
Cons ci ratio: 1.861291e-02	ci left: 1.060488e-01	ci right 1.080439e-01	k: 39606	n:370000
KS ci ratio: 1.555494e-01	ci left: 1.580215e-03	ci right 1.849306e-03	k: 633	n:370000
SORCS3   370000 perm   162 sec   (2277 perm/sec)   p_kst 1.710811e-03   p_cons 1.070432e-01   p_joint 2.421622e-03

Joint ci ratio: 1.292933e-01	ci left: 2.257101e-03	ci right 2.571616e-03	k: 916	n:380000
Cons ci ratio: 1.835764e-02	ci left: 1.061525e-01	ci right 1.081219e-01	k: 40711	n:380000
KS ci ratio: 1.531520e-01	ci left: 1.589230e-03	ci right 1.855303e-03	k: 653	n:380000
SORCS3   380000 perm   168 sec   (2261 perm/sec)   p_kst 1.718421e-03   p_cons 1.071342e-01   p_joint 2.410526e-03

Joint ci ratio: 1.279067e-01	ci left: 2.248858e-03	ci right 2.558609e-03	k: 936	n:390000
Cons ci ratio: 1.810411e-02	ci left: 1.063405e-01	ci right 1.082858e-01	k: 41851	n:390000
KS ci ratio: 1.516530e-01	ci left: 1.580542e-03	ci right 1.842335e-03	k: 666	n:390000
SORCS3   390000 perm   174 sec   (2244 perm/sec)   p_kst 1.707692e-03   p_cons 1.073103e-01   p_joint 2.400000e-03

Joint ci ratio: 1.261023e-01	ci left: 2.257993e-03	ci right 2.564287e-03	k: 963	n:400000
Cons ci ratio: 1.788528e-02	ci left: 1.062578e-01	ci right 1.081779e-01	k: 42886	n:400000
KS ci ratio: 1.489948e-01	ci left: 1.598773e-03	ci right 1.858530e-03	k: 690	n:400000
SORCS3   400000 perm   180 sec   (2227 perm/sec)   p_kst 1.725000e-03   p_cons 1.072150e-01   p_joint 2.407500e-03

Joint ci ratio: 1.664321e-01	ci left: 1.238759e-03	ci right 1.465943e-03	k: 553	n:410000
Cons ci ratio: 1.945602e-02	ci left: 8.921311e-02	ci right 9.096830e-02	k: 36936	n:410000
KS ci ratio: 1.467804e-01	ci left: 1.609103e-03	ci right 1.866313e-03	k: 711	n:410000
SORCS3   410000 perm   186 sec   (2209 perm/sec)   p_kst 1.734146e-03   p_cons 9.008780e-02   p_joint 1.348780e-03

Joint ci ratio: 1.642234e-01	ci left: 1.243502e-03	ci right 1.468230e-03	k: 568	n:420000
Cons ci ratio: 1.922158e-02	ci left: 8.923571e-02	ci right 9.096995e-02	k: 37842	n:420000
KS ci ratio: 1.451587e-01	ci left: 1.607495e-03	ci right 1.861363e-03	k: 727	n:420000
SORCS3   420000 perm   192 sec   (2192 perm/sec)   p_kst 1.730952e-03   p_cons 9.010000e-02   p_joint 1.352381e-03

Joint ci ratio: 1.623790e-01	ci left: 1.243580e-03	ci right 1.465552e-03	k: 581	n:430000
Cons ci ratio: 1.898546e-02	ci left: 8.934306e-02	ci right 9.105782e-02	k: 38785	n:430000
KS ci ratio: 1.435896e-01	ci left: 1.605977e-03	ci right 1.856628e-03	k: 743	n:430000
SORCS3   430000 perm   198 sec   (2175 perm/sec)   p_kst 1.727907e-03   p_cons 9.019767e-02   p_joint 1.351163e-03

Joint ci ratio: 1.608664e-01	ci left: 1.239306e-03	ci right 1.458255e-03	k: 592	n:440000
Cons ci ratio: 1.876406e-02	ci left: 8.939133e-02	ci right 9.108680e-02	k: 39704	n:440000
KS ci ratio: 1.416973e-01	ci left: 1.613310e-03	ci right 1.861507e-03	k: 763	n:440000
SORCS3   440000 perm   204 sec   (2159 perm/sec)   p_kst 1.734091e-03   p_cons 9.023636e-02   p_joint 1.345455e-03

Joint ci ratio: 1.560670e-01	ci left: 1.290730e-03	ci right 1.511325e-03	k: 629	n:450000
Cons ci ratio: 1.855148e-02	ci left: 8.942651e-02	ci right 9.110322e-02	k: 40618	n:450000
KS ci ratio: 1.416072e-01	ci left: 1.579600e-03	ci right 1.822444e-03	k: 764	n:450000
SORCS3   450000 perm   210 sec   (2143 perm/sec)   p_kst 1.697778e-03   p_cons 9.026222e-02   p_joint 1.397778e-03

Joint ci ratio: 1.554529e-01	ci left: 1.273116e-03	ci right 1.489764e-03	k: 634	n:460000
Cons ci ratio: 1.835010e-02	ci left: 8.942345e-02	ci right 9.108171e-02	k: 41515	n:460000
KS ci ratio: 1.404198e-01	ci left: 1.572524e-03	ci right 1.812083e-03	k: 777	n:460000
SORCS3   460000 perm   216 sec   (2125 perm/sec)   p_kst 1.689130e-03   p_cons 9.025000e-02   p_joint 1.378261e-03

Joint ci ratio: 1.535303e-01	ci left: 1.278755e-03	ci right 1.493424e-03	k: 650	n:470000
Cons ci ratio: 1.815114e-02	ci left: 8.945664e-02	ci right 9.109735e-02	k: 42429	n:470000
KS ci ratio: 1.388229e-01	ci left: 1.576027e-03	ci right 1.813163e-03	k: 795	n:470000
SORCS3   470000 perm   223 sec   (2110 perm/sec)   p_kst 1.691489e-03   p_cons 9.027447e-02   p_joint 1.382979e-03

Joint ci ratio: 1.167347e-01	ci left: 2.206901e-03	ci right 2.482494e-03	k: 1124	n:480000
Cons ci ratio: 1.691716e-02	ci left: 9.975457e-02	ci right 1.014586e-01	k: 48290	n:480000
KS ci ratio: 1.374485e-01	ci left: 1.575374e-03	ci right 1.809873e-03	k: 811	n:480000
SORCS3   480000 perm   229 sec   (2095 perm/sec)   p_kst 1.689583e-03   p_cons 1.006042e-01   p_joint 2.341667e-03

Joint ci ratio: 1.163751e-01	ci left: 2.175730e-03	ci right 2.446535e-03	k: 1131	n:490000
Cons ci ratio: 1.674725e-02	ci left: 9.972456e-02	ci right 1.014108e-01	k: 49277	n:490000
KS ci ratio: 1.364447e-01	ci left: 1.566874e-03	ci right 1.798266e-03	k: 823	n:490000
SORCS3   490000 perm   236 sec   (2081 perm/sec)   p_kst 1.679592e-03   p_cons 1.005653e-01   p_joint 2.308163e-03

Joint ci ratio: 1.179548e-01	ci left: 2.073967e-03	ci right 2.335855e-03	k: 1101	n:500000
Cons ci ratio: 1.657374e-02	ci left: 9.978948e-02	ci right 1.014592e-01	k: 50311	n:500000
KS ci ratio: 1.350586e-01	ci left: 1.568382e-03	ci right 1.797454e-03	k: 840	n:500000
SORCS3   500000 perm   242 sec   (2066 perm/sec)   p_kst 1.680000e-03   p_cons 1.006220e-01   p_joint 2.202000e-03

Joint ci ratio: 1.172136e-01	ci left: 2.059944e-03	ci right 2.318313e-03	k: 1115	n:510000
Cons ci ratio: 1.641423e-02	ci left: 9.975621e-02	ci right 1.014091e-01	k: 51296	n:510000
KS ci ratio: 1.336359e-01	ci left: 1.571737e-03	ci right 1.798690e-03	k: 858	n:510000
SORCS3   510000 perm   249 sec   (2052 perm/sec)   p_kst 1.682353e-03   p_cons 1.005804e-01   p_joint 2.186275e-03

Joint ci ratio: 1.160239e-01	ci left: 2.063270e-03	ci right 2.319250e-03	k: 1138	n:520000
Cons ci ratio: 1.625698e-02	ci left: 9.974921e-02	ci right 1.013860e-01	k: 52294	n:520000
KS ci ratio: 1.324085e-01	ci left: 1.571257e-03	ci right 1.795892e-03	k: 874	n:520000
SORCS3   520000 perm   255 sec   (2038 perm/sec)   p_kst 1.680769e-03   p_cons 1.005654e-01   p_joint 2.188462e-03

Joint ci ratio: 1.149690e-01	ci left: 2.062818e-03	ci right 2.316257e-03	k: 1159	n:530000
Cons ci ratio: 1.610182e-02	ci left: 9.976887e-02	ci right 1.013902e-01	k: 53306	n:530000
KS ci ratio: 1.312144e-01	ci left: 1.570804e-03	ci right 1.793191e-03	k: 890	n:530000
SORCS3   530000 perm   262 sec   (2023 perm/sec)   p_kst 1.679245e-03   p_cons 1.005774e-01   p_joint 2.186792e-03

Joint ci ratio: 1.215540e-01	ci left: 1.805355e-03	ci right 2.040780e-03	k: 1037	n:540000
Cons ci ratio: 1.594955e-02	ci left: 9.980447e-02	ci right 1.014109e-01	k: 54327	n:540000
KS ci ratio: 1.298371e-01	ci left: 1.575751e-03	ci right 1.796317e-03	k: 909	n:540000
SORCS3   540000 perm   269 sec   (2008 perm/sec)   p_kst 1.683333e-03   p_cons 1.006056e-01   p_joint 1.920370e-03

Joint ci ratio: 1.254935e-01	ci left: 1.659754e-03	ci right 1.883728e-03	k: 973	n:550000
Cons ci ratio: 1.580486e-02	ci left: 9.980081e-02	ci right 1.013925e-01	k: 55327	n:550000
KS ci ratio: 1.289199e-01	ci left: 1.569972e-03	ci right 1.788058e-03	k: 922	n:550000
SORCS3   550000 perm   276 sec   (1993 perm/sec)   p_kst 1.676364e-03   p_cons 1.005945e-01   p_joint 1.769091e-03

Joint ci ratio: 1.247916e-01	ci left: 1.649143e-03	ci right 1.870348e-03	k: 984	n:560000
Cons ci ratio: 1.567300e-02	ci left: 9.969412e-02	ci right 1.012707e-01	k: 56269	n:560000
KS ci ratio: 1.282280e-01	ci left: 1.559219e-03	ci right 1.774560e-03	k: 932	n:560000
SORCS3   560000 perm   283 sec   (1978 perm/sec)   p_kst 1.664286e-03   p_cons 1.004804e-01   p_joint 1.757143e-03

Joint ci ratio: 1.246036e-01	ci left: 1.625308e-03	ci right 1.842964e-03	k: 987	n:570000
Cons ci ratio: 1.553850e-02	ci left: 9.965942e-02	ci right 1.012218e-01	k: 57250	n:570000
KS ci ratio: 1.271425e-01	ci left: 1.559038e-03	ci right 1.772394e-03	k: 948	n:570000
SORCS3   570000 perm   290 sec   (1964 perm/sec)   p_kst 1.663158e-03   p_cons 1.004386e-01   p_joint 1.731579e-03

Joint ci ratio: 9.749870e-02	ci left: 2.643768e-03	ci right 2.916409e-03	k: 1611	n:580000
Cons ci ratio: 1.540006e-02	ci left: 9.971189e-02	ci right 1.012611e-01	k: 58281	n:580000
KS ci ratio: 1.261496e-01	ci left: 1.557201e-03	ci right 1.768517e-03	k: 963	n:580000
SORCS3   580000 perm   298 sec   (1950 perm/sec)   p_kst 1.660345e-03   p_cons 1.004845e-01   p_joint 2.777586e-03

Joint ci ratio: 9.704927e-02	ci left: 2.623762e-03	ci right 2.893022e-03	k: 1626	n:590000
Cons ci ratio: 1.526640e-02	ci left: 9.974912e-02	ci right 1.012853e-01	k: 59304	n:590000
KS ci ratio: 1.250518e-01	ci left: 1.558716e-03	ci right 1.768260e-03	k: 980	n:590000
SORCS3   590000 perm   305 sec   (1935 perm/sec)   p_kst 1.661017e-03   p_cons 1.005153e-01   p_joint 2.755932e-03

Joint ci ratio: 9.625394e-02	ci left: 2.623945e-03	ci right 2.890892e-03	k: 1653	n:600000
Cons ci ratio: 1.514607e-02	ci left: 9.966724e-02	ci right 1.011900e-01	k: 60256	n:600000
KS ci ratio: 1.239821e-01	ci left: 1.560188e-03	ci right 1.768004e-03	k: 997	n:600000
SORCS3   600000 perm   312 sec   (1921 perm/sec)   p_kst 1.661667e-03   p_cons 1.004267e-01   p_joint 2.755000e-03

Joint ci ratio: 9.613963e-02	ci left: 2.587327e-03	ci right 2.850218e-03	k: 1657	n:610000
Cons ci ratio: 1.503154e-02	ci left: 9.955214e-02	ci right 1.010615e-01	k: 61186	n:610000
KS ci ratio: 1.231218e-01	ci left: 1.556853e-03	ci right 1.762681e-03	k: 1011	n:610000
SORCS3   610000 perm   320 sec   (1907 perm/sec)   p_kst 1.657377e-03   p_cons 1.003049e-01   p_joint 2.716393e-03

Joint ci ratio: 9.533791e-02	ci left: 2.589676e-03	ci right 2.850489e-03	k: 1685	n:620000
Cons ci ratio: 1.491210e-02	ci left: 9.953081e-02	ci right 1.010278e-01	k: 62172	n:620000
KS ci ratio: 1.218044e-01	ci left: 1.566139e-03	ci right 1.770820e-03	k: 1033	n:620000
SORCS3   620000 perm   327 sec   (1894 perm/sec)   p_kst 1.666129e-03   p_cons 1.002774e-01   p_joint 2.717742e-03

Joint ci ratio: 9.463901e-02	ci left: 2.587309e-03	ci right 2.845869e-03	k: 1710	n:630000
Cons ci ratio: 1.478441e-02	ci left: 9.964469e-02	ci right 1.011304e-01	k: 63243	n:630000
KS ci ratio: 1.211622e-01	ci left: 1.558209e-03	ci right 1.760703e-03	k: 1044	n:630000
SORCS3   630000 perm   335 sec   (1882 perm/sec)   p_kst 1.657143e-03   p_cons 1.003857e-01   p_joint 2.714286e-03

Joint ci ratio: 9.472432e-02	ci left: 2.542303e-03	ci right 2.796607e-03	k: 1707	n:640000
Cons ci ratio: 1.466539e-02	ci left: 9.968810e-02	ci right 1.011624e-01	k: 64271	n:640000
KS ci ratio: 1.199061e-01	ci left: 1.567201e-03	ci right 1.768603e-03	k: 1066	n:640000
SORCS3   640000 perm   342 sec   (1869 perm/sec)   p_kst 1.665625e-03   p_cons 1.004234e-01   p_joint 2.667187e-03

Joint ci ratio: 9.489353e-02	ci left: 2.494176e-03	ci right 2.744136e-03	k: 1701	n:650000
Cons ci ratio: 1.455192e-02	ci left: 9.969648e-02	ci right 1.011594e-01	k: 65277	n:650000
KS ci ratio: 1.190171e-01	ci left: 1.566970e-03	ci right 1.766744e-03	k: 1082	n:650000
SORCS3   650000 perm   350 sec   (1857 perm/sec)   p_kst 1.664615e-03   p_cons 1.004262e-01   p_joint 2.616923e-03

Joint ci ratio: 9.478382e-02	ci left: 2.462301e-03	ci right 2.708764e-03	k: 1705	n:660000
Cons ci ratio: 1.443899e-02	ci left: 9.973032e-02	ci right 1.011823e-01	k: 66300	n:660000
KS ci ratio: 1.185263e-01	ci left: 1.556459e-03	ci right 1.754017e-03	k: 1091	n:660000
SORCS3   660000 perm   358 sec   (1845 perm/sec)   p_kst 1.653030e-03   p_cons 1.004545e-01   p_joint 2.583333e-03

Joint ci ratio: 9.697572e-02	ci left: 2.314828e-03	ci right 2.552193e-03	k: 1629	n:670000
Cons ci ratio: 1.433067e-02	ci left: 9.973790e-02	ci right 1.011790e-01	k: 67306	n:670000
KS ci ratio: 1.176675e-01	ci left: 1.556404e-03	ci right 1.752423e-03	k: 1107	n:670000
SORCS3   670000 perm   366 sec   (1833 perm/sec)   p_kst 1.652239e-03   p_cons 1.004567e-01   p_joint 2.431343e-03

Joint ci ratio: 9.745811e-02	ci left: 2.257826e-03	ci right 2.490563e-03	k: 1613	n:680000
Cons ci ratio: 1.422242e-02	ci left: 9.977462e-02	ci right 1.012053e-01	k: 68332	n:680000
KS ci ratio: 1.168791e-01	ci left: 1.554927e-03	ci right 1.749358e-03	k: 1122	n:680000
SORCS3   680000 perm   374 sec   (1820 perm/sec)   p_kst 1.650000e-03   p_cons 1.004882e-01   p_joint 2.372059e-03

Joint ci ratio: 9.688982e-02	ci left: 2.251971e-03	ci right 2.482674e-03	k: 1632	n:690000
Cons ci ratio: 1.411875e-02	ci left: 9.978286e-02	ci right 1.012031e-01	k: 69339	n:690000
KS ci ratio: 1.158518e-01	ci left: 1.560534e-03	ci right 1.753834e-03	k: 1142	n:690000
SORCS3   690000 perm   382 sec   (1808 perm/sec)   p_kst 1.655072e-03   p_cons 1.004913e-01   p_joint 2.365217e-03

Joint ci ratio: 9.633135e-02	ci left: 2.246286e-03	ci right 2.475006e-03	k: 1651	n:700000
Cons ci ratio: 1.402196e-02	ci left: 9.973109e-02	ci right 1.011408e-01	k: 70304	n:700000
KS ci ratio: 1.154492e-01	ci left: 1.549338e-03	ci right 1.740538e-03	k: 1150	n:700000
SORCS3   700000 perm   390 sec   (1795 perm/sec)   p_kst 1.642857e-03   p_cons 1.004343e-01   p_joint 2.358571e-03

Joint ci ratio: 9.728194e-02	ci left: 2.170665e-03	ci right 2.393990e-03	k: 1619	n:710000
Cons ci ratio: 1.392052e-02	ci left: 9.976646e-02	ci right 1.011664e-01	k: 71330	n:710000
KS ci ratio: 1.147043e-01	ci left: 1.548035e-03	ci right 1.737759e-03	k: 1165	n:710000
SORCS3   710000 perm   398 sec   (1782 perm/sec)   p_kst 1.640845e-03   p_cons 1.004648e-01   p_joint 2.280282e-03

Joint ci ratio: 9.668713e-02	ci left: 2.167621e-03	ci right 2.389192e-03	k: 1639	n:720000
Cons ci ratio: 1.382379e-02	ci left: 9.976766e-02	ci right 1.011578e-01	k: 72332	n:720000
KS ci ratio: 1.138771e-01	ci left: 1.549471e-03	ci right 1.737909e-03	k: 1182	n:720000
SORCS3   720000 perm   407 sec   (1771 perm/sec)   p_kst 1.641667e-03   p_cons 1.004611e-01   p_joint 2.276389e-03

Joint ci ratio: 9.610310e-02	ci left: 2.164664e-03	ci right 2.384521e-03	k: 1659	n:730000
Cons ci ratio: 1.373187e-02	ci left: 9.973198e-02	ci right 1.011123e-01	k: 73307	n:730000
KS ci ratio: 1.130204e-01	ci left: 1.552203e-03	ci right 1.739459e-03	k: 1200	n:730000
SORCS3   730000 perm   415 sec   (1759 perm/sec)   p_kst 1.643836e-03   p_cons 1.004205e-01   p_joint 2.272603e-03

Joint ci ratio: 9.558656e-02	ci left: 2.159153e-03	ci right 2.377205e-03	k: 1677	n:740000
Cons ci ratio: 1.364420e-02	ci left: 9.966496e-02	ci right 1.010355e-01	k: 74258	n:740000
KS ci ratio: 1.123675e-01	ci left: 1.549613e-03	ci right 1.735405e-03	k: 1214	n:740000
SORCS3   740000 perm   424 sec   (1747 perm/sec)   p_kst 1.640541e-03   p_cons 1.003486e-01   p_joint 2.266216e-03

Joint ci ratio: 9.516266e-02	ci left: 2.149887e-03	ci right 2.365987e-03	k: 1692	n:750000
Cons ci ratio: 1.355018e-02	ci left: 9.970610e-02	ci right 1.010677e-01	k: 75289	n:750000
KS ci ratio: 1.119542e-01	ci left: 1.540614e-03	ci right 1.724603e-03	k: 1223	n:750000
SORCS3   750000 perm   432 sec   (1735 perm/sec)   p_kst 1.630667e-03   p_cons 1.003853e-01   p_joint 2.256000e-03

Joint ci ratio: 9.463335e-02	ci left: 2.146005e-03	ci right 2.360449e-03	k: 1711	n:760000
Cons ci ratio: 1.345798e-02	ci left: 9.974750e-02	ci right 1.011003e-01	k: 76321	n:760000
KS ci ratio: 1.114549e-01	ci left: 1.534412e-03	ci right 1.716789e-03	k: 1234	n:760000
SORCS3   760000 perm   441 sec   (1721 perm/sec)   p_kst 1.623684e-03   p_cons 1.004224e-01   p_joint 2.251316e-03

Joint ci ratio: 9.405832e-02	ci left: 2.144764e-03	ci right 2.357710e-03	k: 1732	n:770000
Cons ci ratio: 1.337100e-02	ci left: 9.974254e-02	ci right 1.010864e-01	k: 77318	n:770000
KS ci ratio: 1.106513e-01	ci left: 1.537212e-03	ci right 1.718518e-03	k: 1252	n:770000
SORCS3   770000 perm   451 sec   (1708 perm/sec)   p_kst 1.625974e-03   p_cons 1.004130e-01   p_joint 2.249351e-03

Joint ci ratio: 9.330723e-02	ci left: 2.152324e-03	ci right 2.364220e-03	k: 1760	n:780000
Cons ci ratio: 1.328824e-02	ci left: 9.970322e-02	ci right 1.010382e-01	k: 78288	n:780000
KS ci ratio: 1.099950e-01	ci left: 1.536204e-03	ci right 1.716247e-03	k: 1267	n:780000
SORCS3   780000 perm   460 sec   (1697 perm/sec)   p_kst 1.624359e-03   p_cons 1.003692e-01   p_joint 2.256410e-03

Joint ci ratio: 9.354846e-02	ci left: 2.113951e-03	ci right 2.322637e-03	k: 1751	n:790000
Cons ci ratio: 1.320578e-02	ci left: 9.968132e-02	ci right 1.010077e-01	k: 79271	n:790000
KS ci ratio: 1.090103e-01	ci left: 1.545075e-03	ci right 1.724433e-03	k: 1290	n:790000
SORCS3   790000 perm   469 sec   (1686 perm/sec)   p_kst 1.632911e-03   p_cons 1.003430e-01   p_joint 2.216456e-03

Joint ci ratio: 9.325681e-02	ci left: 2.100955e-03	ci right 2.307676e-03	k: 1762	n:800000
Cons ci ratio: 1.312221e-02	ci left: 9.969615e-02	ci right 1.010142e-01	k: 80283	n:800000
KS ci ratio: 1.085910e-01	ci left: 1.537922e-03	ci right 1.715718e-03	k: 1300	n:800000
SORCS3   800000 perm   477 sec   (1675 perm/sec)   p_kst 1.625000e-03   p_cons 1.003538e-01   p_joint 2.202500e-03

Joint ci ratio: 9.255052e-02	ci left: 2.107576e-03	ci right 2.313294e-03	k: 1789	n:810000
Cons ci ratio: 1.303646e-02	ci left: 9.976233e-02	ci right 1.010726e-01	k: 81337	n:810000
KS ci ratio: 1.078474e-01	ci left: 1.540556e-03	ci right 1.717360e-03	k: 1318	n:810000
SORCS3   810000 perm   486 sec   (1666 perm/sec)   p_kst 1.627160e-03   p_cons 1.004160e-01   p_joint 2.208642e-03

Joint ci ratio: 9.422840e-02	ci left: 2.006834e-03	ci right 2.206465e-03	k: 1726	n:820000
Cons ci ratio: 1.295595e-02	ci left: 9.977708e-02	ci right 1.010794e-01	k: 82350	n:820000
KS ci ratio: 1.074008e-01	ci left: 1.534822e-03	ci right 1.710192e-03	k: 1329	n:820000
SORCS3   820000 perm   495 sec   (1656 perm/sec)   p_kst 1.620732e-03   p_cons 1.004268e-01   p_joint 2.104878e-03

Joint ci ratio: 9.347331e-02	ci left: 2.015599e-03	ci right 2.214407e-03	k: 1754	n:830000
Cons ci ratio: 1.287606e-02	ci left: 9.980350e-02	ci right 1.010981e-01	k: 83373	n:830000
KS ci ratio: 1.063263e-01	ci left: 1.547991e-03	ci right 1.722986e-03	k: 1356	n:830000
SORCS3   830000 perm   504 sec   (1646 perm/sec)   p_kst 1.633735e-03   p_cons 1.004494e-01   p_joint 2.113253e-03

Joint ci ratio: 8.605277e-02	ci left: 2.358217e-03	ci right 2.571427e-03	k: 2069	n:840000
Cons ci ratio: 1.280168e-02	ci left: 9.977234e-02	ci right 1.010590e-01	k: 84348	n:840000
KS ci ratio: 1.055895e-01	ci left: 1.551582e-03	ci right 1.725693e-03	k: 1375	n:840000
SORCS3   840000 perm   514 sec   (1636 perm/sec)   p_kst 1.636905e-03   p_cons 1.004143e-01   p_joint 2.463095e-03

Joint ci ratio: 8.549687e-02	ci left: 2.361557e-03	ci right 2.573621e-03	k: 2096	n:850000
Cons ci ratio: 1.272525e-02	ci left: 9.978886e-02	ci right 1.010680e-01	k: 85363	n:850000
KS ci ratio: 1.050944e-01	ci left: 1.548220e-03	ci right 1.721088e-03	k: 1388	n:850000
SORCS3   850000 perm   523 sec   (1625 perm/sec)   p_kst 1.632941e-03   p_cons 1.004271e-01   p_joint 2.465882e-03

Joint ci ratio: 8.555947e-02	ci left: 2.330682e-03	ci right 2.540134e-03	k: 2093	n:860000
Cons ci ratio: 1.265107e-02	ci left: 9.979226e-02	ci right 1.010639e-01	k: 86367	n:860000
KS ci ratio: 1.046062e-01	ci left: 1.544937e-03	ci right 1.716588e-03	k: 1401	n:860000
SORCS3   860000 perm   532 sec   (1615 perm/sec)   p_kst 1.629070e-03   p_cons 1.004267e-01   p_joint 2.433721e-03

Joint ci ratio: 8.607728e-02	ci left: 2.275770e-03	ci right 2.481588e-03	k: 2068	n:870000
Cons ci ratio: 1.258314e-02	ci left: 9.972454e-02	ci right 1.009885e-01	k: 87309	n:870000
KS ci ratio: 1.041617e-01	ci left: 1.540612e-03	ci right 1.711010e-03	k: 1413	n:870000
SORCS3   870000 perm   542 sec   (1605 perm/sec)   p_kst 1.624138e-03   p_cons 1.003552e-01   p_joint 2.377011e-03

Joint ci ratio: 8.552092e-02	ci left: 2.279933e-03	ci right 2.484728e-03	k: 2095	n:880000
Cons ci ratio: 1.250732e-02	ci left: 9.978757e-02	ci right 1.010446e-01	k: 88365	n:880000
KS ci ratio: 1.036136e-01	ci left: 1.539707e-03	ci right 1.709055e-03	k: 1428	n:880000
SORCS3   880000 perm   552 sec   (1595 perm/sec)   p_kst 1.622727e-03   p_cons 1.004148e-01   p_joint 2.380682e-03

Joint ci ratio: 8.255468e-02	ci left: 2.422621e-03	ci right 2.632323e-03	k: 2248	n:890000
Cons ci ratio: 1.243926e-02	ci left: 9.975620e-02	ci right 1.010060e-01	k: 89338	n:890000
KS ci ratio: 1.032893e-01	ci left: 1.532258e-03	ci right 1.700226e-03	k: 1437	n:890000
SORCS3   890000 perm   561 sec   (1585 perm/sec)   p_kst 1.614607e-03   p_cons 1.003798e-01   p_joint 2.525843e-03

Joint ci ratio: 8.652192e-02	ci left: 2.177077e-03	ci right 2.375037e-03	k: 2047	n:900000
Cons ci ratio: 1.236797e-02	ci left: 9.978870e-02	ci right 1.010317e-01	k: 90368	n:900000
KS ci ratio: 1.064903e-01	ci left: 1.423261e-03	ci right 1.584419e-03	k: 1352	n:900000
SORCS3   900000 perm   571 sec   (1576 perm/sec)   p_kst 1.502222e-03   p_cons 1.004089e-01   p_joint 2.274444e-03

Joint ci ratio: 8.694956e-02	ci left: 2.131649e-03	ci right 2.326486e-03	k: 2027	n:910000
Cons ci ratio: 1.229954e-02	ci left: 9.979640e-02	ci right 1.010325e-01	k: 91376	n:910000
KS ci ratio: 1.059825e-01	ci left: 1.421527e-03	ci right 1.581673e-03	k: 1365	n:910000
SORCS3   910000 perm   581 sec   (1567 perm/sec)   p_kst 1.500000e-03   p_cons 1.004132e-01   p_joint 2.227473e-03

Joint ci ratio: 8.654525e-02	ci left: 2.128683e-03	ci right 2.322298e-03	k: 2046	n:920000
Cons ci ratio: 1.223502e-02	ci left: 9.976276e-02	ci right 1.009919e-01	k: 92346	n:920000
KS ci ratio: 1.055586e-01	ci left: 1.417715e-03	ci right 1.576754e-03	k: 1376	n:920000
SORCS3   920000 perm   591 sec   (1557 perm/sec)   p_kst 1.495652e-03   p_cons 1.003761e-01   p_joint 2.223913e-03

Joint ci ratio: 8.614652e-02	ci left: 2.125783e-03	ci right 2.318198e-03	k: 2065	n:930000
Cons ci ratio: 1.216999e-02	ci left: 9.975238e-02	ci right 1.009748e-01	k: 93337	n:930000
KS ci ratio: 1.049883e-01	ci left: 1.418175e-03	ci right 1.576353e-03	k: 1391	n:930000
SORCS3   930000 perm   601 sec   (1547 perm/sec)   p_kst 1.495699e-03   p_cons 1.003624e-01   p_joint 2.220430e-03

Joint ci ratio: 8.571207e-02	ci left: 2.125029e-03	ci right 2.316357e-03	k: 2086	n:940000
Cons ci ratio: 1.210620e-02	ci left: 9.973905e-02	ci right 1.009549e-01	k: 94325	n:940000
KS ci ratio: 1.045762e-01	ci left: 1.414484e-03	ci right 1.571592e-03	k: 1402	n:940000
SORCS3   940000 perm   611 sec   (1538 perm/sec)   p_kst 1.491489e-03   p_cons 1.003457e-01   p_joint 2.219149e-03

Joint ci ratio: 8.538567e-02	ci left: 2.119142e-03	ci right 2.309177e-03	k: 2102	n:950000
Cons ci ratio: 1.204438e-02	ci left: 9.971132e-02	ci right 1.009206e-01	k: 95299	n:950000
KS ci ratio: 1.042057e-01	ci left: 1.409846e-03	ci right 1.565851e-03	k: 1412	n:950000
SORCS3   950000 perm   621 sec   (1529 perm/sec)   p_kst 1.486316e-03   p_cons 1.003147e-01   p_joint 2.212632e-03

Joint ci ratio: 8.488250e-02	ci left: 2.122555e-03	ci right 2.311719e-03	k: 2127	n:960000
Cons ci ratio: 1.198177e-02	ci left: 9.971016e-02	ci right 1.009131e-01	k: 96298	n:960000
KS ci ratio: 1.036206e-01	ci left: 1.411393e-03	ci right 1.566639e-03	k: 1428	n:960000
SORCS3   960000 perm   631 sec   (1521 perm/sec)   p_kst 1.487500e-03   p_cons 1.003104e-01   p_joint 2.215625e-03

Joint ci ratio: 8.514451e-02	ci left: 2.087554e-03	ci right 2.274202e-03	k: 2114	n:970000
Cons ci ratio: 1.191993e-02	ci left: 9.971212e-02	ci right 1.009088e-01	k: 97300	n:970000
KS ci ratio: 1.030096e-01	ci left: 1.413916e-03	ci right 1.568467e-03	k: 1445	n:970000
SORCS3   970000 perm   642 sec   (1512 perm/sec)   p_kst 1.489691e-03   p_cons 1.003093e-01   p_joint 2.179381e-03

Joint ci ratio: 8.540892e-02	ci left: 2.053268e-03	ci right 2.237449e-03	k: 2101	n:980000
Cons ci ratio: 1.185628e-02	ci left: 9.975579e-02	ci right 1.009466e-01	k: 98343	n:980000
KS ci ratio: 1.021300e-01	ci left: 1.424344e-03	ci right 1.578626e-03	k: 1470	n:980000
SORCS3   980000 perm   652 sec   (1503 perm/sec)   p_kst 1.500000e-03   p_cons 1.003500e-01   p_joint 2.143878e-03

Joint ci ratio: 8.528795e-02	ci left: 2.038459e-03	ci right 2.221039e-03	k: 2107	n:990000
Cons ci ratio: 1.179635e-02	ci left: 9.975728e-02	ci right 1.009420e-01	k: 99345	n:990000
KS ci ratio: 1.016818e-01	ci left: 1.422754e-03	ci right 1.576146e-03	k: 1483	n:990000
SORCS3   990000 perm   662 sec   (1495 perm/sec)   p_kst 1.497980e-03   p_cons 1.003485e-01   p_joint 2.128283e-03

Joint ci ratio: 8.478651e-02	ci left: 2.042543e-03	ci right 2.224360e-03	k: 2132	n:1000000
Cons ci ratio: 1.173589e-02	ci left: 9.978071e-02	ci right 1.009596e-01	k: 100369	n:1000000
KS ci ratio: 1.011718e-01	ci left: 1.423146e-03	ci right 1.575765e-03	k: 1498	n:1000000
SORCS3   1000000 perm   673 sec   (1486 perm/sec)   p_kst 1.498000e-03   p_cons 1.003690e-01   p_joint 2.132000e-03

Joint ci ratio: 8.439184e-02	ci left: 2.041703e-03	ci right 2.222558e-03	k: 2152	n:1010000
Cons ci ratio: 1.167948e-02	ci left: 9.975529e-02	ci right 1.009282e-01	k: 101344	n:1010000
KS ci ratio: 1.005364e-01	ci left: 1.427393e-03	ci right 1.579450e-03	k: 1517	n:1010000
SORCS3   1010000 perm   683 sec   (1478 perm/sec)   p_kst 1.501980e-03   p_cons 1.003406e-01   p_joint 2.130693e-03

Joint ci ratio: 8.386737e-02	ci left: 2.047600e-03	ci right 2.227795e-03	k: 2179	n:1020000
Cons ci ratio: 1.162167e-02	ci left: 9.976461e-02	ci right 1.009318e-01	k: 102354	n:1020000
KS ci ratio: 9.981536e-02	ci left: 1.434427e-03	ci right 1.586073e-03	k: 1539	n:1020000
SORCS3   1020000 perm   694 sec   (1469 perm/sec)   p_kst 1.508824e-03   p_cons 1.003471e-01   p_joint 2.136275e-03

Outputting figure to mutsig2_images.part000000000164/SORCS3.24_3777_1020000_0.0015088_0.10035_0.0021363.png
                gene_name: SORCS3
               theta_stop: 0.100 
                    nperm: 1020000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0022 

Current progress: 4 percent done.
SPAG17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
Cons ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
SPAG17   10000 perm   3 sec   (3510 perm/sec)   p_kst 1.060000e-02   p_cons 4.249000e-01   p_joint 4.020000e-02

Joint ci ratio: 1.517155e-01	ci left: 2.984481e-02	ci right 3.479239e-02	k: 645	n:20000
Cons ci ratio: 3.303923e-02	ci left: 4.062141e-01	ci right 4.199112e-01	k: 8261	n:20000
KS ci ratio: 2.536541e-01	ci left: 1.030287e-02	ci right 1.334154e-02	k: 235	n:20000
SPAG17   20000 perm   7 sec   (2873 perm/sec)   p_kst 1.175000e-02   p_cons 4.130500e-01   p_joint 3.225000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 2.699859e-02	ci left: 4.070877e-01	ci right 4.182625e-01	k: 12380	n:30000
KS ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
SPAG17   30000 perm   11 sec   (2849 perm/sec)   p_kst 1.120000e-02   p_cons 4.126667e-01   p_joint 2.113333e-02

Joint ci ratio: 1.173246e-01	ci left: 2.555494e-02	ci right 2.876420e-02	k: 1085	n:40000
Cons ci ratio: 2.341522e-02	ci left: 4.071457e-01	ci right 4.168171e-01	k: 16479	n:40000
KS ci ratio: 1.852084e-01	ci left: 1.004868e-02	ci right 1.212322e-02	k: 442	n:40000
SPAG17   40000 perm   15 sec   (2718 perm/sec)   p_kst 1.105000e-02   p_cons 4.119750e-01   p_joint 2.712500e-02

Joint ci ratio: 8.060936e-02	ci left: 4.333669e-02	ci right 4.699635e-02	k: 2257	n:50000
Cons ci ratio: 2.094751e-02	ci left: 4.075612e-01	ci right 4.162090e-01	k: 20594	n:50000
KS ci ratio: 1.698539e-01	ci left: 9.644224e-03	ci right 1.145328e-02	k: 526	n:50000
SPAG17   50000 perm   20 sec   (2522 perm/sec)   p_kst 1.052000e-02   p_cons 4.118800e-01   p_joint 4.514000e-02

Joint ci ratio: 8.275261e-02	ci left: 3.455621e-02	ci right 3.755555e-02	k: 2162	n:60000
Cons ci ratio: 1.911316e-02	ci left: 4.081742e-01	ci right 4.160676e-01	k: 24727	n:60000
KS ci ratio: 1.546108e-01	ci left: 9.779948e-03	ci right 1.143457e-02	k: 635	n:60000
SPAG17   60000 perm   24 sec   (2548 perm/sec)   p_kst 1.058333e-02   p_cons 4.121167e-01   p_joint 3.603333e-02

Joint ci ratio: 9.268966e-02	ci left: 2.375827e-02	ci right 2.608134e-02	k: 1743	n:70000
Cons ci ratio: 1.768248e-02	ci left: 4.088212e-01	ci right 4.161289e-01	k: 28873	n:70000
KS ci ratio: 1.452336e-01	ci left: 9.551494e-03	ci right 1.106094e-02	k: 720	n:70000
SPAG17   70000 perm   27 sec   (2559 perm/sec)   p_kst 1.028571e-02   p_cons 4.124714e-01   p_joint 2.490000e-02

Joint ci ratio: 7.525923e-02	ci left: 3.156421e-02	ci right 3.404482e-02	k: 2623	n:80000
Cons ci ratio: 1.654208e-02	ci left: 4.090108e-01	ci right 4.158456e-01	k: 32994	n:80000
KS ci ratio: 1.356045e-01	ci left: 9.636074e-03	ci right 1.104977e-02	k: 826	n:80000
SPAG17   80000 perm   31 sec   (2586 perm/sec)   p_kst 1.032500e-02   p_cons 4.124250e-01   p_joint 3.278750e-02

Joint ci ratio: 7.182766e-02	ci left: 3.088154e-02	ci right 3.319320e-02	k: 2882	n:90000
Cons ci ratio: 1.560975e-02	ci left: 4.087817e-01	ci right 4.152240e-01	k: 37080	n:90000
KS ci ratio: 1.275983e-01	ci left: 9.715195e-03	ci right 1.104998e-02	k: 933	n:90000
SPAG17   90000 perm   35 sec   (2597 perm/sec)   p_kst 1.036667e-02   p_cons 4.120000e-01   p_joint 3.202222e-02

Joint ci ratio: 7.193360e-02	ci left: 2.780159e-02	ci right 2.988586e-02	k: 2883	n:100000
Cons ci ratio: 1.480568e-02	ci left: 4.090469e-01	ci right 4.151582e-01	k: 41210	n:100000
KS ci ratio: 1.217505e-01	ci left: 9.634966e-03	ci right 1.089368e-02	k: 1025	n:100000
SPAG17   100000 perm   39 sec   (2586 perm/sec)   p_kst 1.025000e-02   p_cons 4.121000e-01   p_joint 2.883000e-02

Joint ci ratio: 7.383838e-02	ci left: 2.405859e-02	ci right 2.591203e-02	k: 2747	n:110000
Cons ci ratio: 1.411377e-02	ci left: 4.092890e-01	ci right 4.151157e-01	k: 45342	n:110000
KS ci ratio: 1.160638e-01	ci left: 9.667591e-03	ci right 1.086753e-02	k: 1128	n:110000
SPAG17   110000 perm   43 sec   (2565 perm/sec)   p_kst 1.025455e-02   p_cons 4.122000e-01   p_joint 2.497273e-02

Joint ci ratio: 6.792027e-02	ci left: 2.609022e-02	ci right 2.793273e-02	k: 3240	n:120000
Cons ci ratio: 1.351432e-02	ci left: 4.093630e-01	ci right 4.149412e-01	k: 49458	n:120000
KS ci ratio: 1.109697e-01	ci left: 9.720231e-03	ci right 1.087029e-02	k: 1234	n:120000
SPAG17   120000 perm   47 sec   (2560 perm/sec)   p_kst 1.028333e-02   p_cons 4.121500e-01   p_joint 2.700000e-02

Joint ci ratio: 6.811140e-02	ci left: 2.399921e-02	ci right 2.569899e-02	k: 3229	n:130000
Cons ci ratio: 1.297396e-02	ci left: 4.098528e-01	ci right 4.152126e-01	k: 53629	n:130000
KS ci ratio: 1.077580e-01	ci left: 9.533613e-03	ci right 1.062687e-02	k: 1309	n:130000
SPAG17   130000 perm   51 sec   (2553 perm/sec)   p_kst 1.006923e-02   p_cons 4.125308e-01   p_joint 2.483846e-02

Joint ci ratio: 7.490744e-02	ci left: 1.846654e-02	ci right 1.991062e-02	k: 2685	n:140000
Cons ci ratio: 1.249877e-02	ci left: 4.100766e-01	ci right 4.152413e-01	k: 57772	n:140000
KS ci ratio: 1.041658e-01	ci left: 9.492358e-03	ci right 1.054237e-02	k: 1401	n:140000
SPAG17   140000 perm   55 sec   (2548 perm/sec)   p_kst 1.000714e-02   p_cons 4.126571e-01   p_joint 1.917857e-02

Joint ci ratio: 7.241697e-02	ci left: 1.846568e-02	ci right 1.985966e-02	k: 2873	n:150000
Cons ci ratio: 1.162738e-02	ci left: 4.285719e-01	ci right 4.335908e-01	k: 64662	n:150000
KS ci ratio: 1.002349e-01	ci left: 9.587141e-03	ci right 1.060526e-02	k: 1513	n:150000
SPAG17   150000 perm   59 sec   (2539 perm/sec)   p_kst 1.008667e-02   p_cons 4.310800e-01   p_joint 1.915333e-02

Joint ci ratio: 6.708594e-02	ci left: 2.019234e-02	ci right 2.160009e-02	k: 3342	n:160000
Cons ci ratio: 1.126819e-02	ci left: 4.282156e-01	ci right 4.330744e-01	k: 68903	n:160000
KS ci ratio: 9.680807e-02	ci left: 9.652426e-03	ci right 1.064045e-02	k: 1622	n:160000
SPAG17   160000 perm   63 sec   (2529 perm/sec)   p_kst 1.013750e-02   p_cons 4.306437e-01   p_joint 2.088750e-02

Outputting figure to mutsig2_images.part000000000164/SPAG17.21_6864_160000_0.010138_0.43064_0.020887.png
                gene_name: SPAG17
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 6 percent done.
SORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
Cons ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
KS ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
SORL1   10000 perm   3 sec   (3681 perm/sec)   p_kst 4.014000e-01   p_cons 6.518000e-01   p_joint 6.119000e-01

Outputting figure to mutsig2_images.part000000000164/SORL1.15_6837_10000_0.4014_0.6518_0.6119.png
                gene_name: SORL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
SOX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
SOX6   10000 perm   2 sec   (4720 perm/sec)   p_kst 8.145000e-01   p_cons 3.740000e-01   p_joint 7.817000e-01

Outputting figure to mutsig2_images.part000000000164/SOX6.13_2641_10000_0.8145_0.374_0.7817.png
                gene_name: SOX6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 10 percent done.
SOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
KS ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
SOS1   10000 perm   2 sec   (4592 perm/sec)   p_kst 8.110000e-01   p_cons 5.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOS1.12_4094_10000_0.811_0.5285_1.png
                gene_name: SOS1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
KS ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
SOX5   10000 perm   2 sec   (4972 perm/sec)   p_kst 8.628000e-01   p_cons 8.846000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOX5.12_2362_10000_0.8628_0.8846_1.png
                gene_name: SOX5
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
SPAG16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
Cons ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
KS ci ratio: 4.248217e-02	ci left: 4.499948e-01	ci right 4.696286e-01	k: 4598	n:10000
SPAG16   10000 perm   2 sec   (5257 perm/sec)   p_kst 4.598000e-01   p_cons 3.775000e-01   p_joint 5.470000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG16.11_1976_10000_0.4598_0.3775_0.547.png
                gene_name: SPAG16
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 15 percent done.
SP140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
KS ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
SP140   10000 perm   2 sec   (4668 perm/sec)   p_kst 9.386000e-01   p_cons 9.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP140.10_2829_10000_0.9386_0.977_1.png
                gene_name: SP140
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
SNX31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
Cons ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
KS ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
SNX31   10000 perm   2 sec   (5837 perm/sec)   p_kst 1.596000e-01   p_cons 9.850000e-01   p_joint 2.789000e-01

Outputting figure to mutsig2_images.part000000000164/SNX31.9_1379_10000_0.1596_0.985_0.2789.png
                gene_name: SNX31
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 19 percent done.
SON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
Cons ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
SON   10000 perm   3 sec   (3933 perm/sec)   p_kst 1.698000e-01   p_cons 1.357000e-01   p_joint 8.330000e-02

Joint ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
Cons ci ratio: 7.067778e-02	ci left: 1.285686e-01	ci right 1.380383e-01	k: 2665	n:20000
KS ci ratio: 5.987208e-02	ci left: 1.711892e-01	ci right 1.818050e-01	k: 3529	n:20000
SON   20000 perm   6 sec   (3624 perm/sec)   p_kst 1.764500e-01   p_cons 1.332500e-01   p_joint 1.043000e-01

Outputting figure to mutsig2_images.part000000000164/SON.9_7588_20000_0.17645_0.13325_0.1043.png
                gene_name: SON
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 21 percent done.
SP100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
Cons ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
SP100   10000 perm   2 sec   (4684 perm/sec)   p_kst 9.800000e-03   p_cons 6.698000e-01   p_joint 4.230000e-02

Joint ci ratio: 1.412098e-01	ci left: 3.447473e-02	ci right 3.976094e-02	k: 741	n:20000
Cons ci ratio: 1.956033e-02	ci left: 6.609721e-01	ci right 6.740791e-01	k: 13351	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
SP100   20000 perm   5 sec   (4299 perm/sec)   p_kst 1.040000e-02   p_cons 6.675500e-01   p_joint 3.705000e-02

Joint ci ratio: 1.369945e-01	ci left: 2.474400e-02	ci right 2.841512e-02	k: 796	n:30000
Cons ci ratio: 1.609904e-02	ci left: 6.586227e-01	ci right 6.693455e-01	k: 19920	n:30000
KS ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
SP100   30000 perm   7 sec   (4126 perm/sec)   p_kst 1.063333e-02   p_cons 6.640000e-01   p_joint 2.653333e-02

Joint ci ratio: 1.078858e-01	ci left: 3.022373e-02	ci right 3.369465e-02	k: 1277	n:40000
Cons ci ratio: 1.389777e-02	ci left: 6.607767e-01	ci right 6.700493e-01	k: 26617	n:40000
KS ci ratio: 1.869226e-01	ci left: 9.857902e-03	ci right 1.191403e-02	k: 434	n:40000
SP100   40000 perm   10 sec   (4014 perm/sec)   p_kst 1.085000e-02   p_cons 6.654250e-01   p_joint 3.192500e-02

Joint ci ratio: 1.216022e-01	ci left: 1.912060e-02	ci right 2.161552e-02	k: 1017	n:50000
Cons ci ratio: 1.244972e-02	ci left: 6.605826e-01	ci right 6.688782e-01	k: 33237	n:50000
KS ci ratio: 1.671502e-01	ci left: 9.970022e-03	ci right 1.180743e-02	k: 543	n:50000
SP100   50000 perm   13 sec   (3928 perm/sec)   p_kst 1.086000e-02   p_cons 6.647400e-01   p_joint 2.034000e-02

Joint ci ratio: 8.474395e-02	ci left: 3.297224e-02	ci right 3.590635e-02	k: 2065	n:60000
Cons ci ratio: 1.108838e-02	ci left: 6.718708e-01	ci right 6.793789e-01	k: 40538	n:60000
KS ci ratio: 1.522101e-01	ci left: 1.010061e-02	ci right 1.178053e-02	k: 655	n:60000
SP100   60000 perm   16 sec   (3853 perm/sec)   p_kst 1.091667e-02   p_cons 6.756333e-01   p_joint 3.441667e-02

Joint ci ratio: 8.451803e-02	ci left: 2.855276e-02	ci right 3.108641e-02	k: 2086	n:70000
Cons ci ratio: 1.028973e-02	ci left: 6.711292e-01	ci right 6.780849e-01	k: 47223	n:70000
KS ci ratio: 1.416068e-01	ci left: 1.006128e-02	ci right 1.160824e-02	k: 757	n:70000
SP100   70000 perm   19 sec   (3783 perm/sec)   p_kst 1.081429e-02   p_cons 6.746143e-01   p_joint 2.980000e-02

Joint ci ratio: 8.491031e-02	ci left: 2.484703e-02	ci right 2.706253e-02	k: 2075	n:80000
Cons ci ratio: 9.642760e-03	ci left: 6.705513e-01	ci right 6.770611e-01	k: 53905	n:80000
KS ci ratio: 1.333420e-01	ci left: 9.974413e-03	ci right 1.141140e-02	k: 854	n:80000
SP100   80000 perm   22 sec   (3718 perm/sec)   p_kst 1.067500e-02   p_cons 6.738125e-01   p_joint 2.593750e-02

Joint ci ratio: 7.776822e-02	ci left: 2.638678e-02	ci right 2.853271e-02	k: 2470	n:90000
Cons ci ratio: 9.300730e-03	ci left: 6.606249e-01	ci right 6.668090e-01	k: 59735	n:90000
KS ci ratio: 1.265079e-01	ci left: 9.887377e-03	ci right 1.123334e-02	k: 949	n:90000
SP100   90000 perm   25 sec   (3658 perm/sec)   p_kst 1.054444e-02   p_cons 6.637222e-01   p_joint 2.744444e-02

Joint ci ratio: 7.468518e-02	ci left: 2.580778e-02	ci right 2.781979e-02	k: 2680	n:100000
Cons ci ratio: 8.824882e-03	ci left: 6.607120e-01	ci right 6.665785e-01	k: 66365	n:100000
KS ci ratio: 1.195905e-01	ci left: 9.993906e-03	ci right 1.127472e-02	k: 1062	n:100000
SP100   100000 perm   28 sec   (3602 perm/sec)   p_kst 1.062000e-02   p_cons 6.636500e-01   p_joint 2.680000e-02

Joint ci ratio: 7.408762e-02	ci left: 2.389791e-02	ci right 2.574544e-02	k: 2729	n:110000
Cons ci ratio: 8.411202e-03	ci left: 6.610086e-01	ci right 6.666010e-01	k: 73019	n:110000
KS ci ratio: 1.154967e-01	ci left: 9.764722e-03	ci right 1.097039e-02	k: 1139	n:110000
SP100   110000 perm   31 sec   (3550 perm/sec)   p_kst 1.035455e-02   p_cons 6.638091e-01   p_joint 2.480909e-02

Joint ci ratio: 7.413839e-02	ci left: 2.192194e-02	ci right 2.361790e-02	k: 2731	n:120000
Cons ci ratio: 8.043661e-03	ci left: 6.616534e-01	ci right 6.670053e-01	k: 79720	n:120000
KS ci ratio: 1.102059e-01	ci left: 9.858016e-03	ci right 1.101583e-02	k: 1251	n:120000
SP100   120000 perm   34 sec   (3500 perm/sec)   p_kst 1.042500e-02   p_cons 6.643333e-01   p_joint 2.275833e-02

Joint ci ratio: 6.856995e-02	ci left: 2.368152e-02	ci right 2.537054e-02	k: 3187	n:130000
Cons ci ratio: 7.727615e-03	ci left: 6.617871e-01	ci right 6.669286e-01	k: 86367	n:130000
KS ci ratio: 1.051923e-01	ci left: 1.001294e-02	ci right 1.113213e-02	k: 1373	n:130000
SP100   130000 perm   38 sec   (3450 perm/sec)   p_kst 1.056154e-02   p_cons 6.643615e-01   p_joint 2.451538e-02

Joint ci ratio: 6.817337e-02	ci left: 2.228431e-02	ci right 2.386410e-02	k: 3229	n:140000
Cons ci ratio: 7.439438e-03	ci left: 6.623060e-01	ci right 6.672586e-01	k: 93070	n:140000
KS ci ratio: 9.700963e-02	ci left: 1.096898e-02	ci right 1.209424e-02	k: 1613	n:140000
SP100   140000 perm   41 sec   (3400 perm/sec)   p_kst 1.152143e-02   p_cons 6.647857e-01   p_joint 2.306429e-02

Outputting figure to mutsig2_images.part000000000164/SP100.9_3324_140000_0.011521_0.66479_0.023064.png
                gene_name: SP100
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 23 percent done.
SOAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
Cons ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
KS ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
SOAT1   10000 perm   2 sec   (5413 perm/sec)   p_kst 5.443000e-01   p_cons 3.746000e-01   p_joint 7.458000e-01

Outputting figure to mutsig2_images.part000000000164/SOAT1.7_1713_10000_0.5443_0.3746_0.7458.png
                gene_name: SOAT1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 25 percent done.
SOBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.448693e-02	ci left: 7.103801e-01	ci right 7.280920e-01	k: 7193	n:10000
KS ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
SOBP   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.809000e-01   p_cons 7.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOBP.7_2646_10000_0.8809_0.7193_1.png
                gene_name: SOBP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SORBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
Cons ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
KS ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
SORBS1   10000 perm   2 sec   (4630 perm/sec)   p_kst 3.666000e-01   p_cons 5.801000e-01   p_joint 4.184000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS1.7_4200_10000_0.3666_0.5801_0.4184.png
                gene_name: SORBS1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 29 percent done.
SORCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
Cons ci ratio: 1.094410e-01	ci left: 1.074437e-01	ci right 1.199823e-01	k: 1136	n:10000
KS ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
SORCS2   10000 perm   2 sec   (4825 perm/sec)   p_kst 2.827000e-01   p_cons 1.136000e-01   p_joint 1.709000e-01

Joint ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
Cons ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
KS ci ratio: 4.592662e-02	ci left: 2.608285e-01	ci right 2.731394e-01	k: 5339	n:20000
SORCS2   20000 perm   5 sec   (4385 perm/sec)   p_kst 2.669500e-01   p_cons 1.125500e-01   p_joint 1.317500e-01

Outputting figure to mutsig2_images.part000000000164/SORCS2.7_3588_20000_0.26695_0.11255_0.13175.png
                gene_name: SORCS2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 31 percent done.
SPAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
Cons ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
KS ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
SPAG5   10000 perm   2 sec   (4660 perm/sec)   p_kst 8.900000e-02   p_cons 8.792000e-01   p_joint 2.232000e-01

Joint ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
Cons ci ratio: 1.066832e-02	ci left: 8.662755e-01	ci right 8.756164e-01	k: 17420	n:20000
KS ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
SPAG5   20000 perm   5 sec   (4231 perm/sec)   p_kst 8.695000e-02   p_cons 8.710000e-01   p_joint 1.718000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG5.7_3678_20000_0.08695_0.871_0.1718.png
                gene_name: SPAG5
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
SOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
Cons ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
KS ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
SOS2   10000 perm   2 sec   (4959 perm/sec)   p_kst 4.613000e-01   p_cons 5.600000e-02   p_joint 2.599000e-01

Joint ci ratio: 5.648884e-02	ci left: 1.885395e-01	ci right 1.995496e-01	k: 3880	n:20000
Cons ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
KS ci ratio: 3.007521e-02	ci left: 4.523249e-01	ci right 4.661870e-01	k: 9185	n:20000
SOS2   20000 perm   4 sec   (4491 perm/sec)   p_kst 4.592500e-01   p_cons 5.385000e-02   p_joint 1.940000e-01

Joint ci ratio: 4.453668e-02	ci left: 2.006422e-01	ci right 2.098150e-01	k: 6156	n:30000
Cons ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
KS ci ratio: 2.452158e-02	ci left: 4.543143e-01	ci right 4.656267e-01	k: 13799	n:30000
SOS2   30000 perm   7 sec   (4208 perm/sec)   p_kst 4.599667e-01   p_cons 5.346667e-02   p_joint 2.052000e-01

Outputting figure to mutsig2_images.part000000000164/SOS2.6_4091_30000_0.45997_0.053467_0.2052.png
                gene_name: SOS2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 35 percent done.
SP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
KS ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
SP110   10000 perm   2 sec   (5090 perm/sec)   p_kst 4.225000e-01   p_cons 7.622000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000164/SP110.6_2300_10000_0.4225_0.7622_0.6558.png
                gene_name: SP110
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 37 percent done.
SPAG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
Cons ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
KS ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
SPAG6   10000 perm   2 sec   (5508 perm/sec)   p_kst 4.523000e-01   p_cons 1.877000e-01   p_joint 3.263000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG6.6_1574_10000_0.4523_0.1877_0.3263.png
                gene_name: SPAG6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 38 percent done.
SNX25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
Cons ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
KS ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
SNX25   10000 perm   2 sec   (5468 perm/sec)   p_kst 5.532000e-01   p_cons 2.938000e-01   p_joint 4.886000e-01

Outputting figure to mutsig2_images.part000000000164/SNX25.5_2595_10000_0.5532_0.2938_0.4886.png
                gene_name: SNX25
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
SORBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
Cons ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
SORBS2   10000 perm   2 sec   (4749 perm/sec)   p_kst 1.224000e-01   p_cons 8.334000e-01   p_joint 3.226000e-01

Joint ci ratio: 5.349540e-02	ci left: 2.059566e-01	ci right 2.173273e-01	k: 4232	n:20000
Cons ci ratio: 1.237139e-02	ci left: 8.286686e-01	ci right 8.390341e-01	k: 16678	n:20000
KS ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
SORBS2   20000 perm   5 sec   (4322 perm/sec)   p_kst 1.212000e-01   p_cons 8.339000e-01   p_joint 2.116000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS2.5_4491_20000_0.1212_0.8339_0.2116.png
                gene_name: SORBS2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 42 percent done.
SOX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
KS ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
SOX30   10000 perm   2 sec   (5273 perm/sec)   p_kst 1.982000e-01   p_cons 7.410000e-01   p_joint 2.782000e-01

Outputting figure to mutsig2_images.part000000000164/SOX30.5_2282_10000_0.1982_0.741_0.2782.png
                gene_name: SOX30
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 44 percent done.
SP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
Cons ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
KS ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
SP4   10000 perm   2 sec   (5518 perm/sec)   p_kst 1.096000e-01   p_cons 1.760000e-02   p_joint 4.210000e-02

Joint ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
Cons ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
KS ci ratio: 8.064581e-02	ci left: 1.013733e-01	ci right 1.099417e-01	k: 2112	n:20000
SP4   20000 perm   4 sec   (4982 perm/sec)   p_kst 1.056000e-01   p_cons 2.235000e-02   p_joint 6.015000e-02

Joint ci ratio: 1.145520e-01	ci left: 3.541081e-02	ci right 3.974600e-02	k: 1126	n:30000
Cons ci ratio: 1.498542e-01	ci left: 2.062674e-02	ci right 2.399999e-02	k: 668	n:30000
KS ci ratio: 6.589976e-02	ci left: 1.020126e-01	ci right 1.089973e-01	k: 3164	n:30000
SP4   30000 perm   6 sec   (4770 perm/sec)   p_kst 1.054667e-01   p_cons 2.226667e-02   p_joint 3.753333e-02

Joint ci ratio: 9.895473e-02	ci left: 3.587896e-02	ci right 3.963853e-02	k: 1509	n:40000
Cons ci ratio: 1.293339e-01	ci left: 2.099627e-02	ci right 2.392362e-02	k: 897	n:40000
KS ci ratio: 5.677818e-02	ci left: 1.034438e-01	ci right 1.095135e-01	k: 4258	n:40000
SP4   40000 perm   9 sec   (4638 perm/sec)   p_kst 1.064500e-01   p_cons 2.242500e-02   p_joint 3.772500e-02

Joint ci ratio: 7.317430e-02	ci left: 5.229034e-02	ci right 5.628161e-02	k: 2713	n:50000
Cons ci ratio: 1.161306e-01	ci left: 2.098468e-02	ci right 2.359120e-02	k: 1113	n:50000
KS ci ratio: 5.150011e-02	ci left: 1.011594e-01	ci right 1.065267e-01	k: 5191	n:50000
SP4   50000 perm   11 sec   (4523 perm/sec)   p_kst 1.038200e-01   p_cons 2.226000e-02   p_joint 5.426000e-02

Joint ci ratio: 8.701606e-02	ci left: 3.129123e-02	ci right 3.415420e-02	k: 1962	n:60000
Cons ci ratio: 1.063710e-01	ci left: 2.095476e-02	ci right 2.332511e-02	k: 1327	n:60000
KS ci ratio: 4.706107e-02	ci left: 1.012055e-01	ci right 1.060996e-01	k: 6218	n:60000
SP4   60000 perm   14 sec   (4418 perm/sec)   p_kst 1.036333e-01   p_cons 2.211667e-02   p_joint 3.270000e-02

Joint ci ratio: 8.098574e-02	ci left: 3.107260e-02	ci right 3.370920e-02	k: 2266	n:70000
Cons ci ratio: 9.878527e-02	ci left: 2.091214e-02	ci right 2.309916e-02	k: 1539	n:70000
KS ci ratio: 4.365576e-02	ci left: 1.010264e-01	ci right 1.055494e-01	k: 7229	n:70000
SP4   70000 perm   16 sec   (4323 perm/sec)   p_kst 1.032714e-01   p_cons 2.198571e-02   p_joint 3.237143e-02

Outputting figure to mutsig2_images.part000000000164/SP4.5_2379_70000_0.10327_0.021986_0.032371.png
                gene_name: SP4
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 46 percent done.
SP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
Cons ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
SP7   10000 perm   2 sec   (5815 perm/sec)   p_kst 6.532000e-01   p_cons 2.090000e-01   p_joint 5.801000e-01

Outputting figure to mutsig2_images.part000000000164/SP7.5_1304_10000_0.6532_0.209_0.5801.png
                gene_name: SP7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 48 percent done.
SNX29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
SNX29   10000 perm   2 sec   (5791 perm/sec)   p_kst 2.843000e-01   p_cons 3.462000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000164/SNX29.4_1339_10000_0.2843_0.3462_0.3152.png
                gene_name: SNX29
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 50 percent done.
SOX7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
KS ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
SOX7   10000 perm   2 sec   (6180 perm/sec)   p_kst 8.615000e-01   p_cons 4.201000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000164/SOX7.3_1175_10000_0.8615_0.4201_0.7442.png
                gene_name: SOX7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 52 percent done.
SP140L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
SP140L   10000 perm   2 sec   (5730 perm/sec)   p_kst 6.901000e-01   p_cons 5.081000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP140L.4_1819_10000_0.6901_0.5081_1.png
                gene_name: SP140L
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
SP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
Cons ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
KS ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
SP3   10000 perm   2 sec   (5889 perm/sec)   p_kst 2.610000e-01   p_cons 3.572000e-01   p_joint 3.862000e-01

Outputting figure to mutsig2_images.part000000000164/SP3.4_2374_10000_0.261_0.3572_0.3862.png
                gene_name: SP3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 56 percent done.
SPACA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
Cons ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
SPACA1   10000 perm   2 sec   (6051 perm/sec)   p_kst 2.150000e-02   p_cons 8.189000e-01   p_joint 7.060000e-02

Joint ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
Cons ci ratio: 1.324380e-02	ci left: 8.086885e-01	ci right 8.195200e-01	k: 16283	n:20000
KS ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
SPACA1   20000 perm   4 sec   (5414 perm/sec)   p_kst 2.165000e-02   p_cons 8.141500e-01   p_joint 5.670000e-02

Joint ci ratio: 7.522551e-02	ci left: 7.986922e-02	ci right 8.614515e-02	k: 2489	n:30000
Cons ci ratio: 1.087827e-02	ci left: 8.078683e-01	ci right 8.167378e-01	k: 24370	n:30000
KS ci ratio: 1.529216e-01	ci left: 1.979225e-02	ci right 2.310134e-02	k: 642	n:30000
SPACA1   30000 perm   6 sec   (5206 perm/sec)   p_kst 2.140000e-02   p_cons 8.123333e-01   p_joint 8.296667e-02

Joint ci ratio: 7.621906e-02	ci left: 5.965608e-02	ci right 6.440775e-02	k: 2480	n:40000
Cons ci ratio: 9.376248e-03	ci left: 8.099248e-01	ci right 8.175796e-01	k: 32551	n:40000
KS ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
SPACA1   40000 perm   8 sec   (5083 perm/sec)   p_kst 2.145000e-02   p_cons 8.137750e-01   p_joint 6.200000e-02

Joint ci ratio: 7.169190e-02	ci left: 5.439373e-02	ci right 5.845797e-02	k: 2820	n:50000
Cons ci ratio: 8.380675e-03	ci left: 8.105411e-01	ci right 8.173824e-01	k: 40699	n:50000
KS ci ratio: 1.181532e-01	ci left: 2.026591e-02	ci right 2.283005e-02	k: 1076	n:50000
SPACA1   50000 perm   10 sec   (4979 perm/sec)   p_kst 2.152000e-02   p_cons 8.139800e-01   p_joint 5.640000e-02

Joint ci ratio: 6.334256e-02	ci left: 5.809631e-02	ci right 6.191306e-02	k: 3599	n:60000
Cons ci ratio: 7.675626e-03	ci left: 8.098399e-01	ci right 8.160965e-01	k: 48779	n:60000
KS ci ratio: 1.087392e-01	ci left: 2.004602e-02	ci right 2.236728e-02	k: 1271	n:60000
SPACA1   60000 perm   12 sec   (4881 perm/sec)   p_kst 2.118333e-02   p_cons 8.129833e-01   p_joint 5.998333e-02

Joint ci ratio: 5.916260e-02	ci left: 5.726566e-02	ci right 6.077100e-02	k: 4130	n:70000
Cons ci ratio: 7.100842e-03	ci left: 8.103070e-01	ci right 8.160956e-01	k: 56925	n:70000
KS ci ratio: 9.964879e-02	ci left: 2.054974e-02	ci right 2.271874e-02	k: 1513	n:70000
SPACA1   70000 perm   15 sec   (4789 perm/sec)   p_kst 2.161429e-02   p_cons 8.132143e-01   p_joint 5.900000e-02

Outputting figure to mutsig2_images.part000000000164/SPACA1.4_913_70000_0.021614_0.81321_0.059.png
                gene_name: SPACA1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 58 percent done.
SPAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
Cons ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SPAG1   10000 perm   2 sec   (5578 perm/sec)   p_kst 1   p_cons 1.989000e-01   p_joint 5.949000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG1.4_2853_10000_1_0.1989_0.5949.png
                gene_name: SPAG1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 60 percent done.
SNX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
Cons ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
KS ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
SNX32   10000 perm   1 sec   (7036 perm/sec)   p_kst 5.384000e-01   p_cons 7.789000e-01   p_joint 7.528000e-01

Outputting figure to mutsig2_images.part000000000164/SNX32.3_1264_10000_0.5384_0.7789_0.7528.png
                gene_name: SNX32
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 62 percent done.
SNX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
SNX9   10000 perm   2 sec   (6119 perm/sec)   p_kst 9.205000e-01   p_cons 1.247000e-01   p_joint 6.262000e-01

Joint ci ratio: 2.398780e-02	ci left: 5.648572e-01	ci right 5.786220e-01	k: 11435	n:20000
Cons ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
KS ci ratio: 8.035899e-03	ci left: 9.187076e-01	ci right 9.261691e-01	k: 18450	n:20000
SNX9   20000 perm   4 sec   (5481 perm/sec)   p_kst 9.225000e-01   p_cons 1.174500e-01   p_joint 5.717500e-01

Outputting figure to mutsig2_images.part000000000164/SNX9.3_1860_20000_0.9225_0.11745_0.57175.png
                gene_name: SNX9
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
SOHLH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
SOHLH2   10000 perm   2 sec   (6137 perm/sec)   p_kst 8.389000e-01   p_cons 9.060000e-02   p_joint 3.221000e-01

Joint ci ratio: 3.256354e-02	ci left: 4.132466e-01	ci right 4.269767e-01	k: 8402	n:20000
Cons ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
KS ci ratio: 1.217890e-02	ci left: 8.330221e-01	ci right 8.432794e-01	k: 16764	n:20000
SOHLH2   20000 perm   4 sec   (5521 perm/sec)   p_kst 8.382000e-01   p_cons 9.180000e-02   p_joint 4.201000e-01

Outputting figure to mutsig2_images.part000000000164/SOHLH2.3_1322_20000_0.8382_0.0918_0.4201.png
                gene_name: SOHLH2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 65 percent done.
SOX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
SOX9   10000 perm   2 sec   (6233 perm/sec)   p_kst 9.319000e-01   p_cons 7.040000e-02   p_joint 1.955000e-01

Joint ci ratio: 3.859346e-02	ci left: 3.336823e-01	ci right 3.468642e-01	k: 6805	n:20000
Cons ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
KS ci ratio: 7.373366e-03	ci left: 9.304193e-01	ci right 9.373539e-01	k: 18679	n:20000
SOX9   20000 perm   4 sec   (5613 perm/sec)   p_kst 9.339500e-01   p_cons 8.090000e-02   p_joint 3.402500e-01

Outputting figure to mutsig2_images.part000000000164/SOX9.3_1542_20000_0.93395_0.0809_0.34025.png
                gene_name: SOX9
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 67 percent done.
SPACA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.497168e-03	ci left: 9.509609e-01	ci right 9.591714e-01	k: 9552	n:10000
KS ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
SPACA3   10000 perm   2 sec   (5687 perm/sec)   p_kst 9.839000e-01   p_cons 9.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SPACA3.3_668_10000_0.9839_0.9552_1.png
                gene_name: SPACA3
               theta_stop: 0.0085 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SNX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
KS ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
SNX21   10000 perm   1 sec   (6842 perm/sec)   p_kst 7.008000e-01   p_cons 4.658000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SNX21.2_1168_10000_0.7008_0.4658_1.png
                gene_name: SNX21
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
SNX24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
Cons ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
KS ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
SNX24   10000 perm   1 sec   (7337 perm/sec)   p_kst 6.000000e-02   p_cons 2.777000e-01   p_joint 2.627000e-01

Joint ci ratio: 6.444806e-03	ci left: 9.456031e-01	ci right 9.517656e-01	k: 18975	n:20000
Cons ci ratio: 4.483738e-02	ci left: 2.702595e-01	ci right 2.827055e-01	k: 5529	n:20000
KS ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
SNX24   20000 perm   3 sec   (6484 perm/sec)   p_kst 6.100000e-02   p_cons 2.764500e-01   p_joint 9.487500e-01

Joint ci ratio: 3.043579e-03	ci left: 9.807089e-01	ci right 9.837300e-01	k: 29468	n:30000
Cons ci ratio: 3.893675e-02	ci left: 2.475913e-01	ci right 2.574566e-01	k: 7575	n:30000
KS ci ratio: 8.825665e-02	ci left: 5.897053e-02	ci right 6.444807e-02	k: 1850	n:30000
SNX24   30000 perm   5 sec   (6124 perm/sec)   p_kst 6.166667e-02   p_cons 2.525000e-01   p_joint 9.822667e-01

Outputting figure to mutsig2_images.part000000000164/SNX24.2_538_30000_0.061667_0.2525_0.98227.png
                gene_name: SNX24
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 73 percent done.
SNX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
Cons ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
KS ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
SNX4   10000 perm   1 sec   (6769 perm/sec)   p_kst 2.098000e-01   p_cons 1.950000e-01   p_joint 7.480000e-02

Joint ci ratio: 4.267573e-02	ci left: 2.903244e-01	ci right 3.030348e-01	k: 5933	n:20000
Cons ci ratio: 5.795699e-02	ci left: 1.807272e-01	ci right 1.915642e-01	k: 3722	n:20000
KS ci ratio: 5.347938e-02	ci left: 2.060556e-01	ci right 2.174283e-01	k: 4234	n:20000
SNX4   20000 perm   3 sec   (5995 perm/sec)   p_kst 2.117000e-01   p_cons 1.861000e-01   p_joint 2.966500e-01

Outputting figure to mutsig2_images.part000000000164/SNX4.2_1409_20000_0.2117_0.1861_0.29665.png
                gene_name: SNX4
               theta_stop: 0.058 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 75 percent done.
SNX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
KS ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
SNX8   10000 perm   2 sec   (6615 perm/sec)   p_kst 8.625000e-01   p_cons 8.740000e-02   p_joint 7.188000e-01

Joint ci ratio: 5.038926e-02	ci left: 2.264120e-01	ci right 2.381659e-01	k: 4645	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 1.102150e-02	ci left: 8.586641e-01	ci right 8.682300e-01	k: 17270	n:20000
SNX8   20000 perm   3 sec   (5862 perm/sec)   p_kst 8.635000e-01   p_cons 8.740000e-02   p_joint 2.322500e-01

Outputting figure to mutsig2_images.part000000000164/SNX8.2_1442_20000_0.8635_0.0874_0.23225.png
                gene_name: SNX8
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
SOCS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
Cons ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
KS ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
SOCS5   10000 perm   2 sec   (6392 perm/sec)   p_kst 3.480000e-02   p_cons 8.608000e-01   p_joint 8.690000e-02

Joint ci ratio: 4.897612e-02	ci left: 2.366224e-01	ci right 2.485525e-01	k: 4851	n:20000
Cons ci ratio: 1.098642e-02	ci left: 8.594250e-01	ci right 8.689688e-01	k: 17285	n:20000
KS ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
SOCS5   20000 perm   4 sec   (5705 perm/sec)   p_kst 3.340000e-02   p_cons 8.642500e-01   p_joint 2.425500e-01

Joint ci ratio: 5.764199e-02	ci left: 1.297032e-01	ci right 1.374346e-01	k: 4006	n:30000
Cons ci ratio: 8.817285e-03	ci left: 8.643536e-01	ci right 8.720417e-01	k: 26047	n:30000
KS ci ratio: 1.234817e-01	ci left: 3.048980e-02	ci right 3.453473e-02	k: 974	n:30000
SOCS5   30000 perm   6 sec   (5426 perm/sec)   p_kst 3.246667e-02   p_cons 8.682333e-01   p_joint 1.335333e-01

Joint ci ratio: 3.431639e-02	ci left: 2.417358e-01	ci right 2.502011e-01	k: 9838	n:40000
Cons ci ratio: 7.840928e-03	ci left: 8.586318e-01	ci right 8.654156e-01	k: 34482	n:40000
KS ci ratio: 1.063482e-01	ci left: 3.110037e-02	ci right 3.461788e-02	k: 1313	n:40000
SOCS5   40000 perm   8 sec   (5239 perm/sec)   p_kst 3.282500e-02   p_cons 8.620500e-01   p_joint 2.459500e-01

Joint ci ratio: 3.076112e-02	ci left: 2.413743e-01	ci right 2.489353e-01	k: 12257	n:50000
Cons ci ratio: 7.032237e-03	ci left: 8.583404e-01	ci right 8.644176e-01	k: 43070	n:50000
KS ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
SOCS5   50000 perm   10 sec   (5091 perm/sec)   p_kst 3.208000e-02   p_cons 8.614000e-01   p_joint 2.451400e-01

Outputting figure to mutsig2_images.part000000000164/SOCS5.2_1615_50000_0.03208_0.8614_0.24514.png
                gene_name: SOCS5
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 79 percent done.
SOCS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
SOCS6   10000 perm   2 sec   (6443 perm/sec)   p_kst 2.140000e-01   p_cons 2.059000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOCS6.2_1612_10000_0.214_0.2059_1.png
                gene_name: SOCS6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
SOHLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
Cons ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
KS ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
SOHLH1   10000 perm   2 sec   (4570 perm/sec)   p_kst 1.573000e-01   p_cons 3.430000e-02   p_joint 4.390000e-02

Joint ci ratio: 1.394623e-01	ci left: 3.534423e-02	ci right 4.069115e-02	k: 759	n:20000
Cons ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
KS ci ratio: 6.395096e-02	ci left: 1.530687e-01	ci right 1.632309e-01	k: 3162	n:20000
SOHLH1   20000 perm   4 sec   (4878 perm/sec)   p_kst 1.581000e-01   p_cons 3.560000e-02   p_joint 3.795000e-02

Joint ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
Cons ci ratio: 1.070718e-01	ci left: 4.047235e-02	ci right 4.508339e-02	k: 1282	n:30000
KS ci ratio: 5.231756e-02	ci left: 1.534935e-01	ci right 1.617729e-01	k: 4728	n:30000
SOHLH1   30000 perm   6 sec   (4927 perm/sec)   p_kst 1.576000e-01   p_cons 4.273333e-02   p_joint 5.413333e-02

Joint ci ratio: 8.134084e-02	ci left: 5.263858e-02	ci right 5.712631e-02	k: 2194	n:40000
Cons ci ratio: 9.386996e-02	ci left: 3.981070e-02	ci right 4.375618e-02	k: 1670	n:40000
KS ci ratio: 4.535258e-02	ci left: 1.537941e-01	ci right 1.609558e-01	k: 6294	n:40000
SOHLH1   40000 perm   8 sec   (4897 perm/sec)   p_kst 1.573500e-01   p_cons 4.175000e-02   p_joint 5.485000e-02

Outputting figure to mutsig2_images.part000000000164/SOHLH1.2_1237_40000_0.15735_0.04175_0.05485.png
                gene_name: SOHLH1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 83 percent done.
SORD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
Cons ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
SORD   10000 perm   2 sec   (5767 perm/sec)   p_kst 4.060000e-01   p_cons 2.102000e-01   p_joint 9.502000e-01

Outputting figure to mutsig2_images.part000000000164/SORD.2_1110_10000_0.406_0.2102_0.9502.png
                gene_name: SORD
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 85 percent done.
SOX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265292e-02	ci left: 8.998033e-01	ci right 9.113592e-01	k: 9057	n:10000
Cons ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
SOX10   10000 perm   1 sec   (6712 perm/sec)   p_kst 8.362000e-01   p_cons 9.048000e-01   p_joint 9.057000e-01

Outputting figure to mutsig2_images.part000000000164/SOX10.2_1413_10000_0.8362_0.9048_0.9057.png
                gene_name: SOX10
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 87 percent done.
SOX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
SOX11   10000 perm   2 sec   (5702 perm/sec)   p_kst 9.000000e-04   p_cons 8.165000e-01   p_joint 1.400000e-03

Joint ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
Cons ci ratio: 1.291455e-02	ci left: 8.162730e-01	ci right 8.269333e-01	k: 16433	n:20000
KS ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
SOX11   20000 perm   4 sec   (4832 perm/sec)   p_kst 1.150000e-03   p_cons 8.216500e-01   p_joint 1.400000e-03

Joint ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
Cons ci ratio: 1.057513e-02	ci left: 8.164125e-01	ci right 8.251253e-01	k: 24624	n:30000
KS ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
SOX11   30000 perm   6 sec   (4750 perm/sec)   p_kst 1.000000e-03   p_cons 8.208000e-01   p_joint 1.066667e-03

Joint ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
Cons ci ratio: 9.134923e-03	ci left: 8.177619e-01	ci right 8.252913e-01	k: 32862	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
SOX11   40000 perm   9 sec   (4699 perm/sec)   p_kst 1.200000e-03   p_cons 8.215500e-01   p_joint 1.275000e-03

Joint ci ratio: 4.584617e-01	ci left: 1.126877e-03	ci right 1.813103e-03	k: 72	n:50000
Cons ci ratio: 8.469107e-03	ci left: 8.073188e-01	ci right 8.142051e-01	k: 40539	n:50000
KS ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
SOX11   50000 perm   11 sec   (4678 perm/sec)   p_kst 1.360000e-03   p_cons 8.107800e-01   p_joint 1.440000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 7.726485e-03	ci left: 8.078104e-01	ci right 8.140928e-01	k: 48658	n:60000
KS ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
SOX11   60000 perm   13 sec   (4660 perm/sec)   p_kst 1.316667e-03   p_cons 8.109667e-01   p_joint 1.316667e-03

Joint ci ratio: 3.977370e-01	ci left: 1.110998e-03	ci right 1.674495e-03	k: 96	n:70000
Cons ci ratio: 7.152882e-03	ci left: 8.080653e-01	ci right 8.138803e-01	k: 56769	n:70000
KS ci ratio: 3.977370e-01	ci left: 1.110998e-03	ci right 1.674495e-03	k: 96	n:70000
SOX11   70000 perm   15 sec   (4625 perm/sec)   p_kst 1.371429e-03   p_cons 8.109857e-01   p_joint 1.371429e-03

Joint ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
Cons ci ratio: 6.685406e-03	ci left: 8.085083e-01	ci right 8.139441e-01	k: 64899	n:80000
KS ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
SOX11   80000 perm   17 sec   (4573 perm/sec)   p_kst 1.450000e-03   p_cons 8.112375e-01   p_joint 1.450000e-03

Joint ci ratio: 3.371249e-01	ci left: 1.247624e-03	ci right 1.763142e-03	k: 134	n:90000
Cons ci ratio: 6.305201e-03	ci left: 8.085606e-01	ci right 8.136859e-01	k: 73002	n:90000
KS ci ratio: 3.371249e-01	ci left: 1.247624e-03	ci right 1.763142e-03	k: 134	n:90000
SOX11   90000 perm   20 sec   (4519 perm/sec)   p_kst 1.488889e-03   p_cons 8.111333e-01   p_joint 1.488889e-03

Joint ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
Cons ci ratio: 5.993996e-03	ci left: 8.080570e-01	ci right 8.129250e-01	k: 81050	n:100000
KS ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
SOX11   100000 perm   22 sec   (4461 perm/sec)   p_kst 1.510000e-03   p_cons 8.105000e-01   p_joint 1.510000e-03

Joint ci ratio: 3.031070e-01	ci left: 1.288388e-03	ci right 1.756707e-03	k: 166	n:110000
Cons ci ratio: 5.726884e-03	ci left: 8.075320e-01	ci right 8.121789e-01	k: 89085	n:110000
KS ci ratio: 3.031070e-01	ci left: 1.288388e-03	ci right 1.756707e-03	k: 166	n:110000
SOX11   110000 perm   25 sec   (4401 perm/sec)   p_kst 1.509091e-03   p_cons 8.098636e-01   p_joint 1.509091e-03

Joint ci ratio: 2.887634e-01	ci left: 1.312181e-03	ci right 1.762460e-03	k: 183	n:120000
Cons ci ratio: 5.468919e-03	ci left: 8.084300e-01	ci right 8.128716e-01	k: 97279	n:120000
KS ci ratio: 2.887634e-01	ci left: 1.312181e-03	ci right 1.762460e-03	k: 183	n:120000
SOX11   120000 perm   28 sec   (4301 perm/sec)   p_kst 1.525000e-03   p_cons 8.106583e-01   p_joint 1.525000e-03

Joint ci ratio: 2.790757e-01	ci left: 1.304125e-03	ci right 1.733988e-03	k: 196	n:130000
Cons ci ratio: 5.258787e-03	ci left: 8.082584e-01	ci right 8.125277e-01	k: 105352	n:130000
KS ci ratio: 2.790757e-01	ci left: 1.304125e-03	ci right 1.733988e-03	k: 196	n:130000
SOX11   130000 perm   31 sec   (4244 perm/sec)   p_kst 1.507692e-03   p_cons 8.104000e-01   p_joint 1.507692e-03

Joint ci ratio: 2.677598e-01	ci left: 1.324082e-03	ci right 1.739859e-03	k: 213	n:140000
Cons ci ratio: 5.071026e-03	ci left: 8.081215e-01	ci right 8.122370e-01	k: 113426	n:140000
KS ci ratio: 2.677598e-01	ci left: 1.324082e-03	ci right 1.739859e-03	k: 213	n:140000
SOX11   140000 perm   34 sec   (4158 perm/sec)   p_kst 1.521429e-03   p_cons 8.101857e-01   p_joint 1.521429e-03

Joint ci ratio: 2.577175e-01	ci left: 1.341683e-03	ci right 1.744645e-03	k: 230	n:150000
Cons ci ratio: 4.900546e-03	ci left: 8.080991e-01	ci right 8.120756e-01	k: 121514	n:150000
KS ci ratio: 2.577175e-01	ci left: 1.341683e-03	ci right 1.744645e-03	k: 230	n:150000
SOX11   150000 perm   37 sec   (4104 perm/sec)   p_kst 1.533333e-03   p_cons 8.100933e-01   p_joint 1.533333e-03

Joint ci ratio: 2.482258e-01	ci left: 1.363200e-03	ci right 1.755218e-03	k: 248	n:160000
Cons ci ratio: 4.745794e-03	ci left: 8.081067e-01	ci right 8.119571e-01	k: 129606	n:160000
KS ci ratio: 2.482258e-01	ci left: 1.363200e-03	ci right 1.755218e-03	k: 248	n:160000
SOX11   160000 perm   40 sec   (4049 perm/sec)   p_kst 1.550000e-03   p_cons 8.100375e-01   p_joint 1.550000e-03

Joint ci ratio: 2.397109e-01	ci left: 1.382424e-03	ci right 1.764309e-03	k: 266	n:170000
Cons ci ratio: 4.599728e-03	ci left: 8.084576e-01	ci right 8.121907e-01	k: 137756	n:170000
KS ci ratio: 2.397109e-01	ci left: 1.382424e-03	ci right 1.764309e-03	k: 266	n:170000
SOX11   170000 perm   43 sec   (3996 perm/sec)   p_kst 1.564706e-03   p_cons 8.103294e-01   p_joint 1.564706e-03

Joint ci ratio: 2.349237e-01	ci left: 1.363099e-03	ci right 1.731032e-03	k: 277	n:180000
Cons ci ratio: 4.469347e-03	ci left: 8.085647e-01	ci right 8.121920e-01	k: 145869	n:180000
KS ci ratio: 2.349237e-01	ci left: 1.363099e-03	ci right 1.731032e-03	k: 277	n:180000
SOX11   180000 perm   46 sec   (3941 perm/sec)   p_kst 1.538889e-03   p_cons 8.103833e-01   p_joint 1.538889e-03

Joint ci ratio: 2.316193e-01	ci left: 1.330999e-03	ci right 1.684490e-03	k: 285	n:190000
Cons ci ratio: 4.351173e-03	ci left: 8.085403e-01	ci right 8.120713e-01	k: 153959	n:190000
KS ci ratio: 2.316193e-01	ci left: 1.330999e-03	ci right 1.684490e-03	k: 285	n:190000
SOX11   190000 perm   49 sec   (3885 perm/sec)   p_kst 1.500000e-03   p_cons 8.103105e-01   p_joint 1.500000e-03

Joint ci ratio: 2.253997e-01	ci left: 1.339871e-03	ci right 1.684836e-03	k: 301	n:200000
Cons ci ratio: 4.241281e-03	ci left: 8.085647e-01	ci right 8.120063e-01	k: 162058	n:200000
KS ci ratio: 2.253997e-01	ci left: 1.339871e-03	ci right 1.684836e-03	k: 301	n:200000
SOX11   200000 perm   52 sec   (3832 perm/sec)   p_kst 1.505000e-03   p_cons 8.102900e-01   p_joint 1.505000e-03

Joint ci ratio: 2.162762e-01	ci left: 1.393036e-03	ci right 1.735245e-03	k: 327	n:210000
Cons ci ratio: 4.138226e-03	ci left: 8.086690e-01	ci right 8.120271e-01	k: 170174	n:210000
KS ci ratio: 2.162762e-01	ci left: 1.393036e-03	ci right 1.735245e-03	k: 327	n:210000
SOX11   210000 perm   56 sec   (3779 perm/sec)   p_kst 1.557143e-03   p_cons 8.103524e-01   p_joint 1.557143e-03

Joint ci ratio: 2.099673e-01	ci left: 1.415775e-03	ci right 1.752121e-03	k: 347	n:220000
Cons ci ratio: 4.039405e-03	ci left: 8.089883e-01	ci right 8.122672e-01	k: 178339	n:220000
KS ci ratio: 2.099673e-01	ci left: 1.415775e-03	ci right 1.752121e-03	k: 347	n:220000
SOX11   220000 perm   59 sec   (3727 perm/sec)   p_kst 1.577273e-03   p_cons 8.106318e-01   p_joint 1.577273e-03

Joint ci ratio: 2.070167e-01	ci left: 1.395427e-03	ci right 1.721689e-03	k: 357	n:230000
Cons ci ratio: 3.951641e-03	ci left: 8.089446e-01	ci right 8.121519e-01	k: 186427	n:230000
KS ci ratio: 2.070167e-01	ci left: 1.395427e-03	ci right 1.721689e-03	k: 357	n:230000
SOX11   230000 perm   63 sec   (3675 perm/sec)   p_kst 1.552174e-03   p_cons 8.105522e-01   p_joint 1.552174e-03

Joint ci ratio: 2.033585e-01	ci left: 1.388667e-03	ci right 1.706899e-03	k: 370	n:240000
Cons ci ratio: 3.870880e-03	ci left: 8.087841e-01	ci right 8.119250e-01	k: 194486	n:240000
KS ci ratio: 2.033585e-01	ci left: 1.388667e-03	ci right 1.706899e-03	k: 370	n:240000
SOX11   240000 perm   66 sec   (3629 perm/sec)   p_kst 1.541667e-03   p_cons 8.103583e-01   p_joint 1.541667e-03

Joint ci ratio: 1.998876e-01	ci left: 1.382495e-03	ci right 1.693245e-03	k: 383	n:250000
Cons ci ratio: 3.794330e-03	ci left: 8.086813e-01	ci right 8.117595e-01	k: 202556	n:250000
KS ci ratio: 1.998876e-01	ci left: 1.382495e-03	ci right 1.693245e-03	k: 383	n:250000
SOX11   250000 perm   70 sec   (3557 perm/sec)   p_kst 1.532000e-03   p_cons 8.102240e-01   p_joint 1.532000e-03

Joint ci ratio: 1.958488e-01	ci left: 1.387812e-03	ci right 1.692703e-03	k: 399	n:260000
Cons ci ratio: 3.719773e-03	ci left: 8.087837e-01	ci right 8.118016e-01	k: 210677	n:260000
KS ci ratio: 1.958488e-01	ci left: 1.387812e-03	ci right 1.692703e-03	k: 399	n:260000
SOX11   260000 perm   74 sec   (3509 perm/sec)   p_kst 1.534615e-03   p_cons 8.102962e-01   p_joint 1.534615e-03

Joint ci ratio: 1.918146e-01	ci left: 1.396320e-03	ci right 1.696024e-03	k: 416	n:270000
Cons ci ratio: 3.650940e-03	ci left: 8.087528e-01	ci right 8.117146e-01	k: 218764	n:270000
KS ci ratio: 1.918146e-01	ci left: 1.396320e-03	ci right 1.696024e-03	k: 416	n:270000
SOX11   270000 perm   78 sec   (3464 perm/sec)   p_kst 1.540741e-03   p_cons 8.102370e-01   p_joint 1.540741e-03

Joint ci ratio: 1.878032e-01	ci left: 1.407683e-03	ci right 1.702788e-03	k: 434	n:280000
Cons ci ratio: 3.585708e-03	ci left: 8.087318e-01	ci right 8.116404e-01	k: 226853	n:280000
KS ci ratio: 1.878032e-01	ci left: 1.407683e-03	ci right 1.702788e-03	k: 434	n:280000
SOX11   280000 perm   82 sec   (3421 perm/sec)   p_kst 1.550000e-03   p_cons 8.101893e-01   p_joint 1.550000e-03

Joint ci ratio: 1.844417e-01	ci left: 1.411745e-03	ci right 1.701811e-03	k: 450	n:290000
Cons ci ratio: 3.522312e-03	ci left: 8.088475e-01	ci right 8.117049e-01	k: 234981	n:290000
KS ci ratio: 1.844417e-01	ci left: 1.411745e-03	ci right 1.701811e-03	k: 450	n:290000
SOX11   290000 perm   86 sec   (3378 perm/sec)   p_kst 1.551724e-03   p_cons 8.102793e-01   p_joint 1.551724e-03

Joint ci ratio: 1.816444e-01	ci left: 1.409215e-03	ci right 1.693887e-03	k: 464	n:300000
Cons ci ratio: 3.463852e-03	ci left: 8.088055e-01	ci right 8.116152e-01	k: 243064	n:300000
KS ci ratio: 1.816444e-01	ci left: 1.409215e-03	ci right 1.693887e-03	k: 464	n:300000
SOX11   300000 perm   90 sec   (3336 perm/sec)   p_kst 1.546667e-03   p_cons 8.102133e-01   p_joint 1.546667e-03

Joint ci ratio: 1.778584e-01	ci left: 1.425371e-03	ci right 1.706659e-03	k: 484	n:310000
Cons ci ratio: 3.405243e-03	ci left: 8.090350e-01	ci right 8.117979e-01	k: 251230	n:310000
KS ci ratio: 1.778584e-01	ci left: 1.425371e-03	ci right 1.706659e-03	k: 484	n:310000
SOX11   310000 perm   94 sec   (3297 perm/sec)   p_kst 1.561290e-03   p_cons 8.104194e-01   p_joint 1.561290e-03

Joint ci ratio: 1.751704e-01	ci left: 1.425632e-03	ci right 1.702270e-03	k: 499	n:320000
Cons ci ratio: 3.228980e-03	ci left: 8.202784e-01	ci right 8.229345e-01	k: 262915	n:320000
KS ci ratio: 1.751704e-01	ci left: 1.425632e-03	ci right 1.702270e-03	k: 499	n:320000
SOX11   320000 perm   98 sec   (3260 perm/sec)   p_kst 1.559375e-03   p_cons 8.216094e-01   p_joint 1.559375e-03

Joint ci ratio: 1.722660e-01	ci left: 1.431707e-03	ci right 1.704439e-03	k: 516	n:330000
Cons ci ratio: 3.178565e-03	ci left: 8.204019e-01	ci right 8.230167e-01	k: 271165	n:330000
KS ci ratio: 1.722660e-01	ci left: 1.431707e-03	ci right 1.704439e-03	k: 516	n:330000
SOX11   330000 perm   102 sec   (3220 perm/sec)   p_kst 1.563636e-03   p_cons 8.217121e-01   p_joint 1.563636e-03

Joint ci ratio: 1.695015e-01	ci left: 1.437460e-03	ci right 1.706444e-03	k: 533	n:340000
Cons ci ratio: 3.133205e-03	ci left: 8.202588e-01	ci right 8.228357e-01	k: 279327	n:340000
KS ci ratio: 1.695015e-01	ci left: 1.437460e-03	ci right 1.706444e-03	k: 533	n:340000
SOX11   340000 perm   107 sec   (3181 perm/sec)   p_kst 1.567647e-03   p_cons 8.215500e-01   p_joint 1.567647e-03

Joint ci ratio: 1.671700e-01	ci left: 1.437441e-03	ci right 1.702350e-03	k: 548	n:350000
Cons ci ratio: 3.088135e-03	ci left: 8.202760e-01	ci right 8.228158e-01	k: 287542	n:350000
KS ci ratio: 1.671700e-01	ci left: 1.437441e-03	ci right 1.702350e-03	k: 548	n:350000
SOX11   350000 perm   111 sec   (3143 perm/sec)   p_kst 1.565714e-03   p_cons 8.215486e-01   p_joint 1.565714e-03

Joint ci ratio: 1.643495e-01	ci left: 1.448101e-03	ci right 1.710026e-03	k: 567	n:360000
Cons ci ratio: 3.044264e-03	ci left: 8.203593e-01	ci right 8.228633e-01	k: 295781	n:360000
KS ci ratio: 1.643495e-01	ci left: 1.448101e-03	ci right 1.710026e-03	k: 567	n:360000
SOX11   360000 perm   116 sec   (3108 perm/sec)   p_kst 1.575000e-03   p_cons 8.216139e-01   p_joint 1.575000e-03

Joint ci ratio: 1.619437e-01	ci left: 1.453034e-03	ci right 1.711629e-03	k: 584	n:370000
Cons ci ratio: 3.002958e-03	ci left: 8.203652e-01	ci right 8.228351e-01	k: 303993	n:370000
KS ci ratio: 1.619437e-01	ci left: 1.453034e-03	ci right 1.711629e-03	k: 584	n:370000
SOX11   370000 perm   120 sec   (3074 perm/sec)   p_kst 1.578378e-03   p_cons 8.216027e-01   p_joint 1.578378e-03

Joint ci ratio: 1.593755e-01	ci left: 1.462786e-03	ci right 1.718594e-03	k: 603	n:380000
Cons ci ratio: 2.963661e-03	ci left: 8.203341e-01	ci right 8.227715e-01	k: 312191	n:380000
KS ci ratio: 1.593755e-01	ci left: 1.462786e-03	ci right 1.718594e-03	k: 603	n:380000
SOX11   380000 perm   125 sec   (3042 perm/sec)   p_kst 1.586842e-03   p_cons 8.215553e-01   p_joint 1.586842e-03

Joint ci ratio: 1.576882e-01	ci left: 1.457290e-03	ci right 1.709183e-03	k: 616	n:390000
Cons ci ratio: 2.925586e-03	ci left: 8.203331e-01	ci right 8.227391e-01	k: 320400	n:390000
KS ci ratio: 1.576882e-01	ci left: 1.457290e-03	ci right 1.709183e-03	k: 616	n:390000
SOX11   390000 perm   129 sec   (3013 perm/sec)   p_kst 1.579487e-03   p_cons 8.215385e-01   p_joint 1.579487e-03

Joint ci ratio: 1.559294e-01	ci left: 1.454484e-03	ci right 1.702826e-03	k: 630	n:400000
Cons ci ratio: 2.889533e-03	ci left: 8.202721e-01	ci right 8.226482e-01	k: 328585	n:400000
KS ci ratio: 1.559294e-01	ci left: 1.454484e-03	ci right 1.702826e-03	k: 630	n:400000
SOX11   400000 perm   134 sec   (2978 perm/sec)   p_kst 1.575000e-03   p_cons 8.214625e-01   p_joint 1.575000e-03

Joint ci ratio: 1.543481e-01	ci left: 1.449485e-03	ci right 1.694231e-03	k: 643	n:410000
Cons ci ratio: 2.854851e-03	ci left: 8.202070e-01	ci right 8.225543e-01	k: 336767	n:410000
KS ci ratio: 1.543481e-01	ci left: 1.449485e-03	ci right 1.694231e-03	k: 643	n:410000
SOX11   410000 perm   139 sec   (2948 perm/sec)   p_kst 1.568293e-03   p_cons 8.213829e-01   p_joint 1.568293e-03

Joint ci ratio: 1.520050e-01	ci left: 1.460768e-03	ci right 1.703334e-03	k: 663	n:420000
Cons ci ratio: 2.822464e-03	ci left: 8.200330e-01	ci right 8.223531e-01	k: 344902	n:420000
KS ci ratio: 1.520050e-01	ci left: 1.460768e-03	ci right 1.703334e-03	k: 663	n:420000
SOX11   420000 perm   144 sec   (2920 perm/sec)   p_kst 1.578571e-03   p_cons 8.211952e-01   p_joint 1.578571e-03

Joint ci ratio: 1.507622e-01	ci left: 1.451408e-03	ci right 1.690272e-03	k: 674	n:430000
Cons ci ratio: 2.790378e-03	ci left: 8.199488e-01	ci right 8.222422e-01	k: 353072	n:430000
KS ci ratio: 1.507622e-01	ci left: 1.451408e-03	ci right 1.690272e-03	k: 674	n:430000
SOX11   430000 perm   149 sec   (2891 perm/sec)   p_kst 1.567442e-03   p_cons 8.210977e-01   p_joint 1.567442e-03

Joint ci ratio: 1.491146e-01	ci left: 1.451234e-03	ci right 1.687226e-03	k: 689	n:440000
Cons ci ratio: 2.758956e-03	ci left: 8.199119e-01	ci right 8.221793e-01	k: 361261	n:440000
KS ci ratio: 1.491146e-01	ci left: 1.451234e-03	ci right 1.687226e-03	k: 689	n:440000
SOX11   440000 perm   154 sec   (2854 perm/sec)   p_kst 1.565909e-03   p_cons 8.210477e-01   p_joint 1.565909e-03

Joint ci ratio: 1.471025e-01	ci left: 1.459642e-03	ci right 1.693517e-03	k: 708	n:450000
Cons ci ratio: 2.728613e-03	ci left: 8.198723e-01	ci right 8.221147e-01	k: 369448	n:450000
KS ci ratio: 1.471025e-01	ci left: 1.459642e-03	ci right 1.693517e-03	k: 708	n:450000
SOX11   450000 perm   159 sec   (2828 perm/sec)   p_kst 1.573333e-03   p_cons 8.209956e-01   p_joint 1.573333e-03

Joint ci ratio: 1.453698e-01	ci left: 1.463515e-03	ci right 1.695009e-03	k: 725	n:460000
Cons ci ratio: 2.699070e-03	ci left: 8.198542e-01	ci right 8.220722e-01	k: 377644	n:460000
KS ci ratio: 1.453698e-01	ci left: 1.463515e-03	ci right 1.695009e-03	k: 725	n:460000
SOX11   460000 perm   164 sec   (2797 perm/sec)   p_kst 1.576087e-03   p_cons 8.209652e-01   p_joint 1.576087e-03

Joint ci ratio: 1.439884e-01	ci left: 1.461085e-03	ci right 1.689810e-03	k: 739	n:470000
Cons ci ratio: 2.669770e-03	ci left: 8.199138e-01	ci right 8.221078e-01	k: 385876	n:470000
KS ci ratio: 1.439884e-01	ci left: 1.461085e-03	ci right 1.689810e-03	k: 739	n:470000
SOX11   470000 perm   170 sec   (2767 perm/sec)   p_kst 1.572340e-03   p_cons 8.210128e-01   p_joint 1.572340e-03

Joint ci ratio: 1.430261e-01	ci left: 1.450731e-03	ci right 1.676187e-03	k: 749	n:480000
Cons ci ratio: 2.642115e-03	ci left: 8.198916e-01	ci right 8.220628e-01	k: 394070	n:480000
KS ci ratio: 1.430261e-01	ci left: 1.450731e-03	ci right 1.676187e-03	k: 749	n:480000
SOX11   480000 perm   175 sec   (2741 perm/sec)   p_kst 1.560417e-03   p_cons 8.209792e-01   p_joint 1.560417e-03

Joint ci ratio: 1.416171e-01	ci left: 1.450646e-03	ci right 1.673681e-03	k: 764	n:490000
Cons ci ratio: 2.616011e-03	ci left: 8.197908e-01	ci right 8.219401e-01	k: 402225	n:490000
KS ci ratio: 1.416171e-01	ci left: 1.450646e-03	ci right 1.673681e-03	k: 764	n:490000
SOX11   490000 perm   180 sec   (2716 perm/sec)   p_kst 1.559184e-03   p_cons 8.208673e-01   p_joint 1.559184e-03

Joint ci ratio: 1.398901e-01	ci left: 1.458296e-03	ci right 1.679544e-03	k: 783	n:500000
Cons ci ratio: 2.587669e-03	ci left: 8.200348e-01	ci right 8.221615e-01	k: 410550	n:500000
KS ci ratio: 1.398901e-01	ci left: 1.458296e-03	ci right 1.679544e-03	k: 783	n:500000
SOX11   500000 perm   186 sec   (2692 perm/sec)   p_kst 1.566000e-03   p_cons 8.211000e-01   p_joint 1.566000e-03

Joint ci ratio: 1.389195e-01	ci left: 1.450518e-03	ci right 1.668933e-03	k: 794	n:510000
Cons ci ratio: 2.561234e-03	ci left: 8.201534e-01	ci right 8.222586e-01	k: 418816	n:510000
KS ci ratio: 1.389195e-01	ci left: 1.450518e-03	ci right 1.668933e-03	k: 794	n:510000
SOX11   510000 perm   191 sec   (2665 perm/sec)   p_kst 1.556863e-03   p_cons 8.212078e-01   p_joint 1.556863e-03

Joint ci ratio: 1.375423e-01	ci left: 1.452328e-03	ci right 1.668671e-03	k: 810	n:520000
Cons ci ratio: 2.536538e-03	ci left: 8.201577e-01	ci right 8.222426e-01	k: 427025	n:520000
KS ci ratio: 1.375423e-01	ci left: 1.452328e-03	ci right 1.668671e-03	k: 810	n:520000
SOX11   520000 perm   197 sec   (2641 perm/sec)   p_kst 1.557692e-03   p_cons 8.212019e-01   p_joint 1.557692e-03

Joint ci ratio: 1.358765e-01	ci left: 1.461371e-03	ci right 1.676212e-03	k: 830	n:530000
Cons ci ratio: 2.513044e-03	ci left: 8.201033e-01	ci right 8.221687e-01	k: 435203	n:530000
KS ci ratio: 1.358765e-01	ci left: 1.461371e-03	ci right 1.676212e-03	k: 830	n:530000
SOX11   530000 perm   203 sec   (2615 perm/sec)   p_kst 1.566038e-03   p_cons 8.211377e-01   p_joint 1.566038e-03

Joint ci ratio: 1.341121e-01	ci left: 1.473674e-03	ci right 1.687286e-03	k: 852	n:540000
Cons ci ratio: 2.490880e-03	ci left: 8.199693e-01	ci right 8.220161e-01	k: 443337	n:540000
KS ci ratio: 1.341121e-01	ci left: 1.473674e-03	ci right 1.687286e-03	k: 852	n:540000
SOX11   540000 perm   209 sec   (2589 perm/sec)   p_kst 1.577778e-03   p_cons 8.209944e-01   p_joint 1.577778e-03

Joint ci ratio: 1.333335e-01	ci left: 1.464454e-03	ci right 1.675398e-03	k: 862	n:550000
Cons ci ratio: 2.468635e-03	ci left: 8.199187e-01	ci right 8.219470e-01	k: 451514	n:550000
KS ci ratio: 1.333335e-01	ci left: 1.464454e-03	ci right 1.675398e-03	k: 862	n:550000
SOX11   550000 perm   215 sec   (2563 perm/sec)   p_kst 1.567273e-03   p_cons 8.209345e-01   p_joint 1.567273e-03

Joint ci ratio: 1.325683e-01	ci left: 1.455565e-03	ci right 1.663932e-03	k: 872	n:560000
Cons ci ratio: 2.447005e-03	ci left: 8.198663e-01	ci right 8.218768e-01	k: 459689	n:560000
KS ci ratio: 1.325683e-01	ci left: 1.455565e-03	ci right 1.663932e-03	k: 872	n:560000
SOX11   560000 perm   221 sec   (2533 perm/sec)   p_kst 1.557143e-03   p_cons 8.208732e-01   p_joint 1.557143e-03

Joint ci ratio: 1.312960e-01	ci left: 1.458869e-03	ci right 1.665548e-03	k: 889	n:570000
Cons ci ratio: 2.424225e-03	ci left: 8.200234e-01	ci right 8.220154e-01	k: 467982	n:570000
KS ci ratio: 1.312960e-01	ci left: 1.458869e-03	ci right 1.665548e-03	k: 889	n:570000
SOX11   570000 perm   227 sec   (2508 perm/sec)   p_kst 1.559649e-03   p_cons 8.210211e-01   p_joint 1.559649e-03

Joint ci ratio: 1.302034e-01	ci left: 1.458733e-03	ci right 1.663539e-03	k: 904	n:580000
Cons ci ratio: 2.402407e-03	ci left: 8.201336e-01	ci right 8.221080e-01	k: 476251	n:580000
KS ci ratio: 1.302034e-01	ci left: 1.458733e-03	ci right 1.663539e-03	k: 904	n:580000
SOX11   580000 perm   234 sec   (2482 perm/sec)   p_kst 1.558621e-03   p_cons 8.211224e-01   p_joint 1.558621e-03

Joint ci ratio: 1.295615e-01	ci left: 1.448766e-03	ci right 1.651094e-03	k: 913	n:590000
Cons ci ratio: 2.382087e-03	ci left: 8.201264e-01	ci right 8.220840e-01	k: 484453	n:590000
KS ci ratio: 1.295615e-01	ci left: 1.448766e-03	ci right 1.651094e-03	k: 913	n:590000
SOX11   590000 perm   240 sec   (2459 perm/sec)   p_kst 1.547458e-03   p_cons 8.211068e-01   p_joint 1.547458e-03

Joint ci ratio: 1.291393e-01	ci left: 1.434296e-03	ci right 1.633900e-03	k: 919	n:600000
Cons ci ratio: 2.362194e-03	ci left: 8.201295e-01	ci right 8.220707e-01	k: 492661	n:600000
KS ci ratio: 1.291393e-01	ci left: 1.434296e-03	ci right 1.633900e-03	k: 919	n:600000
SOX11   600000 perm   246 sec   (2437 perm/sec)   p_kst 1.531667e-03   p_cons 8.211017e-01   p_joint 1.531667e-03

Joint ci ratio: 1.277576e-01	ci left: 1.442517e-03	ci right 1.640954e-03	k: 939	n:610000
Cons ci ratio: 2.341968e-03	ci left: 8.202361e-01	ci right 8.221609e-01	k: 500932	n:610000
KS ci ratio: 1.277576e-01	ci left: 1.442517e-03	ci right 1.640954e-03	k: 939	n:610000
SOX11   610000 perm   253 sec   (2415 perm/sec)   p_kst 1.539344e-03   p_cons 8.212000e-01   p_joint 1.539344e-03

Joint ci ratio: 1.270171e-01	ci left: 1.436427e-03	ci right 1.632794e-03	k: 950	n:620000
Cons ci ratio: 2.322379e-03	ci left: 8.203231e-01	ci right 8.222320e-01	k: 509193	n:620000
KS ci ratio: 1.270171e-01	ci left: 1.436427e-03	ci right 1.632794e-03	k: 950	n:620000
SOX11   620000 perm   259 sec   (2393 perm/sec)   p_kst 1.532258e-03   p_cons 8.212790e-01   p_joint 1.532258e-03

Joint ci ratio: 1.264869e-01	ci left: 1.425921e-03	ci right 1.619978e-03	k: 958	n:630000
Cons ci ratio: 2.303859e-03	ci left: 8.203326e-01	ci right 8.222263e-01	k: 517407	n:630000
KS ci ratio: 1.264869e-01	ci left: 1.425921e-03	ci right 1.619978e-03	k: 958	n:630000
SOX11   630000 perm   266 sec   (2372 perm/sec)   p_kst 1.520635e-03   p_cons 8.212810e-01   p_joint 1.520635e-03

Joint ci ratio: 1.257032e-01	ci left: 1.421800e-03	ci right 1.614008e-03	k: 970	n:640000
Cons ci ratio: 2.285494e-03	ci left: 8.203780e-01	ci right 8.222566e-01	k: 525644	n:640000
KS ci ratio: 1.257032e-01	ci left: 1.421800e-03	ci right 1.614008e-03	k: 970	n:640000
SOX11   640000 perm   272 sec   (2351 perm/sec)   p_kst 1.515625e-03   p_cons 8.213187e-01   p_joint 1.515625e-03

Joint ci ratio: 1.245538e-01	ci left: 1.426752e-03	ci right 1.617735e-03	k: 988	n:650000
Cons ci ratio: 2.267693e-03	ci left: 8.204050e-01	ci right 8.222691e-01	k: 533870	n:650000
KS ci ratio: 1.245538e-01	ci left: 1.426752e-03	ci right 1.617735e-03	k: 988	n:650000
SOX11   650000 perm   279 sec   (2331 perm/sec)   p_kst 1.520000e-03   p_cons 8.213385e-01   p_joint 1.520000e-03

Joint ci ratio: 1.236816e-01	ci left: 1.425688e-03	ci right 1.615094e-03	k: 1002	n:660000
Cons ci ratio: 2.250813e-03	ci left: 8.203645e-01	ci right 8.222145e-01	k: 542052	n:660000
KS ci ratio: 1.236816e-01	ci left: 1.425688e-03	ci right 1.615094e-03	k: 1002	n:660000
SOX11   660000 perm   286 sec   (2311 perm/sec)   p_kst 1.518182e-03   p_cons 8.212909e-01   p_joint 1.518182e-03

Joint ci ratio: 1.227670e-01	ci left: 1.426107e-03	ci right 1.614066e-03	k: 1017	n:670000
Cons ci ratio: 2.233645e-03	ci left: 8.204119e-01	ci right 8.222480e-01	k: 550292	n:670000
KS ci ratio: 1.227670e-01	ci left: 1.426107e-03	ci right 1.614066e-03	k: 1017	n:670000
SOX11   670000 perm   292 sec   (2293 perm/sec)   p_kst 1.517910e-03   p_cons 8.213313e-01   p_joint 1.517910e-03

Joint ci ratio: 1.218724e-01	ci left: 1.426519e-03	ci right 1.613064e-03	k: 1032	n:680000
Cons ci ratio: 2.216886e-03	ci left: 8.204551e-01	ci right 8.222774e-01	k: 558530	n:680000
KS ci ratio: 1.218724e-01	ci left: 1.426519e-03	ci right 1.613064e-03	k: 1032	n:680000
SOX11   680000 perm   299 sec   (2274 perm/sec)   p_kst 1.517647e-03   p_cons 8.213676e-01   p_joint 1.517647e-03

Joint ci ratio: 1.212291e-01	ci left: 1.421301e-03	ci right 1.606113e-03	k: 1043	n:690000
Cons ci ratio: 2.200977e-03	ci left: 8.204332e-01	ci right 8.222424e-01	k: 566724	n:690000
KS ci ratio: 1.212291e-01	ci left: 1.421301e-03	ci right 1.606113e-03	k: 1043	n:690000
SOX11   690000 perm   306 sec   (2256 perm/sec)   p_kst 1.511594e-03   p_cons 8.213391e-01   p_joint 1.511594e-03

Joint ci ratio: 1.204244e-01	ci left: 1.420393e-03	ci right 1.603772e-03	k: 1057	n:700000
Cons ci ratio: 2.185416e-03	ci left: 8.204105e-01	ci right 8.222068e-01	k: 574917	n:700000
KS ci ratio: 1.204244e-01	ci left: 1.420393e-03	ci right 1.603772e-03	k: 1057	n:700000
SOX11   700000 perm   313 sec   (2238 perm/sec)   p_kst 1.510000e-03   p_cons 8.213100e-01   p_joint 1.510000e-03

Joint ci ratio: 1.198036e-01	ci left: 1.415414e-03	ci right 1.597143e-03	k: 1068	n:710000
Cons ci ratio: 2.170159e-03	ci left: 8.203914e-01	ci right 8.221750e-01	k: 583112	n:710000
KS ci ratio: 1.198036e-01	ci left: 1.415414e-03	ci right 1.597143e-03	k: 1068	n:710000
SOX11   710000 perm   320 sec   (2219 perm/sec)   p_kst 1.504225e-03   p_cons 8.212845e-01   p_joint 1.504225e-03

Joint ci ratio: 1.192475e-01	ci left: 1.409229e-03	ci right 1.589264e-03	k: 1078	n:720000
Cons ci ratio: 2.154484e-03	ci left: 8.204729e-01	ci right 8.222439e-01	k: 591379	n:720000
KS ci ratio: 1.192475e-01	ci left: 1.409229e-03	ci right 1.589264e-03	k: 1078	n:720000
SOX11   720000 perm   327 sec   (2199 perm/sec)   p_kst 1.497222e-03   p_cons 8.213597e-01   p_joint 1.497222e-03

Joint ci ratio: 1.181571e-01	ci left: 1.416509e-03	ci right 1.595704e-03	k: 1098	n:730000
Cons ci ratio: 2.139642e-03	ci left: 8.204837e-01	ci right 8.222425e-01	k: 599596	n:730000
KS ci ratio: 1.181571e-01	ci left: 1.416509e-03	ci right 1.595704e-03	k: 1098	n:730000
SOX11   730000 perm   335 sec   (2180 perm/sec)   p_kst 1.504110e-03   p_cons 8.213644e-01   p_joint 1.504110e-03

Joint ci ratio: 1.172535e-01	ci left: 1.419663e-03	ci right 1.597789e-03	k: 1115	n:740000
Cons ci ratio: 2.125397e-03	ci left: 8.204536e-01	ci right 8.222006e-01	k: 607783	n:740000
KS ci ratio: 1.172535e-01	ci left: 1.419663e-03	ci right 1.597789e-03	k: 1115	n:740000
SOX11   740000 perm   342 sec   (2163 perm/sec)   p_kst 1.506757e-03   p_cons 8.213284e-01   p_joint 1.506757e-03

Joint ci ratio: 1.164734e-01	ci left: 1.420150e-03	ci right 1.597069e-03	k: 1130	n:750000
Cons ci ratio: 2.111250e-03	ci left: 8.204498e-01	ci right 8.221851e-01	k: 615989	n:750000
KS ci ratio: 1.164734e-01	ci left: 1.420150e-03	ci right 1.597069e-03	k: 1130	n:750000
SOX11   750000 perm   350 sec   (2145 perm/sec)   p_kst 1.506667e-03   p_cons 8.213187e-01   p_joint 1.506667e-03

Joint ci ratio: 1.155069e-01	ci left: 1.425739e-03	ci right 1.601780e-03	k: 1149	n:760000
Cons ci ratio: 2.097184e-03	ci left: 8.204737e-01	ci right 8.221975e-01	k: 624216	n:760000
KS ci ratio: 1.155069e-01	ci left: 1.425739e-03	ci right 1.601780e-03	k: 1149	n:760000
SOX11   760000 perm   357 sec   (2128 perm/sec)   p_kst 1.511842e-03   p_cons 8.213368e-01   p_joint 1.511842e-03

Joint ci ratio: 1.147609e-01	ci left: 1.426142e-03	ci right 1.601019e-03	k: 1164	n:770000
Cons ci ratio: 2.082898e-03	ci left: 8.205674e-01	ci right 8.222796e-01	k: 632497	n:770000
KS ci ratio: 1.147609e-01	ci left: 1.426142e-03	ci right 1.601019e-03	k: 1164	n:770000
SOX11   770000 perm   365 sec   (2112 perm/sec)   p_kst 1.511688e-03   p_cons 8.214247e-01   p_joint 1.511688e-03

Joint ci ratio: 1.141746e-01	ci left: 1.422802e-03	ci right 1.596318e-03	k: 1176	n:780000
Cons ci ratio: 2.069252e-03	ci left: 8.206085e-01	ci right 8.223096e-01	k: 640739	n:780000
KS ci ratio: 1.141746e-01	ci left: 1.422802e-03	ci right 1.596318e-03	k: 1176	n:780000
SOX11   780000 perm   372 sec   (2096 perm/sec)   p_kst 1.507692e-03   p_cons 8.214603e-01   p_joint 1.507692e-03

Joint ci ratio: 1.139819e-01	ci left: 1.409710e-03	ci right 1.581320e-03	k: 1180	n:790000
Cons ci ratio: 2.055427e-03	ci left: 8.207121e-01	ci right 8.224020e-01	k: 649031	n:790000
KS ci ratio: 1.139819e-01	ci left: 1.409710e-03	ci right 1.581320e-03	k: 1180	n:790000
SOX11   790000 perm   380 sec   (2081 perm/sec)   p_kst 1.493671e-03   p_cons 8.215582e-01   p_joint 1.493671e-03

Joint ci ratio: 1.133599e-01	ci left: 1.407877e-03	ci right 1.578265e-03	k: 1193	n:800000
Cons ci ratio: 2.042345e-03	ci left: 8.207455e-01	ci right 8.224247e-01	k: 657269	n:800000
KS ci ratio: 1.133599e-01	ci left: 1.407877e-03	ci right 1.578265e-03	k: 1193	n:800000
SOX11   800000 perm   387 sec   (2066 perm/sec)   p_kst 1.491250e-03   p_cons 8.215862e-01   p_joint 1.491250e-03

Joint ci ratio: 1.126544e-01	ci left: 1.408491e-03	ci right 1.577822e-03	k: 1208	n:810000
Cons ci ratio: 2.029381e-03	ci left: 8.207966e-01	ci right 8.224653e-01	k: 665522	n:810000
KS ci ratio: 1.126544e-01	ci left: 1.408491e-03	ci right 1.577822e-03	k: 1208	n:810000
SOX11   810000 perm   396 sec   (2047 perm/sec)   p_kst 1.491358e-03   p_cons 8.216321e-01   p_joint 1.491358e-03

Joint ci ratio: 1.118705e-01	ci left: 1.411464e-03	ci right 1.579894e-03	k: 1225	n:820000
Cons ci ratio: 2.016535e-03	ci left: 8.208649e-01	ci right 8.225231e-01	k: 673790	n:820000
KS ci ratio: 1.118705e-01	ci left: 1.411464e-03	ci right 1.579894e-03	k: 1225	n:820000
SOX11   820000 perm   404 sec   (2032 perm/sec)   p_kst 1.493902e-03   p_cons 8.216951e-01   p_joint 1.493902e-03

Joint ci ratio: 1.114174e-01	ci left: 1.406170e-03	ci right 1.573244e-03	k: 1235	n:830000
Cons ci ratio: 2.004399e-03	ci left: 8.208627e-01	ci right 8.225109e-01	k: 682001	n:830000
KS ci ratio: 1.114174e-01	ci left: 1.406170e-03	ci right 1.573244e-03	k: 1235	n:830000
SOX11   830000 perm   412 sec   (2017 perm/sec)   p_kst 1.487952e-03   p_cons 8.216880e-01   p_joint 1.487952e-03

Joint ci ratio: 1.108362e-01	ci left: 1.404476e-03	ci right 1.570421e-03	k: 1248	n:840000
Cons ci ratio: 1.991954e-03	ci left: 8.209382e-01	ci right 8.225763e-01	k: 690277	n:840000
KS ci ratio: 1.108362e-01	ci left: 1.404476e-03	ci right 1.570421e-03	k: 1248	n:840000
SOX11   840000 perm   420 sec   (2002 perm/sec)   p_kst 1.485714e-03   p_cons 8.217583e-01   p_joint 1.485714e-03

Joint ci ratio: 1.103954e-01	ci left: 1.399391e-03	ci right 1.564036e-03	k: 1258	n:850000
Cons ci ratio: 1.980914e-03	ci left: 8.208375e-01	ci right 8.224662e-01	k: 698405	n:850000
KS ci ratio: 1.103954e-01	ci left: 1.399391e-03	ci right 1.564036e-03	k: 1258	n:850000
SOX11   850000 perm   428 sec   (1988 perm/sec)   p_kst 1.480000e-03   p_cons 8.216529e-01   p_joint 1.480000e-03

Joint ci ratio: 1.097436e-01	ci left: 1.400081e-03	ci right 1.563771e-03	k: 1273	n:860000
Cons ci ratio: 1.968954e-03	ci left: 8.209033e-01	ci right 8.225224e-01	k: 706674	n:860000
KS ci ratio: 1.097436e-01	ci left: 1.400081e-03	ci right 1.563771e-03	k: 1273	n:860000
SOX11   860000 perm   436 sec   (1973 perm/sec)   p_kst 1.480233e-03   p_cons 8.217140e-01   p_joint 1.480233e-03

Joint ci ratio: 1.090608e-01	ci left: 1.401876e-03	ci right 1.564691e-03	k: 1289	n:870000
Cons ci ratio: 1.958236e-03	ci left: 8.208134e-01	ci right 8.224235e-01	k: 714809	n:870000
KS ci ratio: 1.090608e-01	ci left: 1.401876e-03	ci right 1.564691e-03	k: 1289	n:870000
SOX11   870000 perm   444 sec   (1960 perm/sec)   p_kst 1.481609e-03   p_cons 8.216195e-01   p_joint 1.481609e-03

Joint ci ratio: 1.085155e-01	ci left: 1.400316e-03	ci right 1.562085e-03	k: 1302	n:880000
Cons ci ratio: 1.947547e-03	ci left: 8.207473e-01	ci right 8.223484e-01	k: 722963	n:880000
KS ci ratio: 1.085155e-01	ci left: 1.400316e-03	ci right 1.562085e-03	k: 1302	n:880000
SOX11   880000 perm   452 sec   (1946 perm/sec)   p_kst 1.479545e-03   p_cons 8.215489e-01   p_joint 1.479545e-03

Joint ci ratio: 1.078962e-01	ci left: 1.400980e-03	ci right 1.561843e-03	k: 1317	n:890000
Cons ci ratio: 1.936549e-03	ci left: 8.207557e-01	ci right 8.223478e-01	k: 731182	n:890000
KS ci ratio: 1.078962e-01	ci left: 1.400980e-03	ci right 1.561843e-03	k: 1317	n:890000
SOX11   890000 perm   461 sec   (1932 perm/sec)   p_kst 1.479775e-03   p_cons 8.215528e-01   p_joint 1.479775e-03

Joint ci ratio: 1.074490e-01	ci left: 1.397307e-03	ci right 1.557041e-03	k: 1328	n:900000
Cons ci ratio: 1.926115e-03	ci left: 8.207062e-01	ci right 8.222895e-01	k: 739349	n:900000
KS ci ratio: 1.074490e-01	ci left: 1.397307e-03	ci right 1.557041e-03	k: 1328	n:900000
SOX11   900000 perm   469 sec   (1919 perm/sec)   p_kst 1.475556e-03   p_cons 8.214989e-01   p_joint 1.475556e-03

Joint ci ratio: 1.066492e-01	ci left: 1.403341e-03	ci right 1.562496e-03	k: 1348	n:910000
Cons ci ratio: 1.915438e-03	ci left: 8.207205e-01	ci right 8.222951e-01	k: 747573	n:910000
KS ci ratio: 1.066492e-01	ci left: 1.403341e-03	ci right 1.562496e-03	k: 1348	n:910000
SOX11   910000 perm   478 sec   (1906 perm/sec)   p_kst 1.481319e-03   p_cons 8.215088e-01   p_joint 1.481319e-03

Joint ci ratio: 1.061391e-01	ci left: 1.401842e-03	ci right 1.560019e-03	k: 1361	n:920000
Cons ci ratio: 1.904618e-03	ci left: 8.207835e-01	ci right 8.223493e-01	k: 755842	n:920000
KS ci ratio: 1.061391e-01	ci left: 1.401842e-03	ci right 1.560019e-03	k: 1361	n:920000
SOX11   920000 perm   486 sec   (1892 perm/sec)   p_kst 1.479348e-03   p_cons 8.215674e-01   p_joint 1.479348e-03

Joint ci ratio: 1.054445e-01	ci left: 1.405611e-03	ci right 1.563111e-03	k: 1379	n:930000
Cons ci ratio: 1.894821e-03	ci left: 8.207148e-01	ci right 8.222724e-01	k: 763990	n:930000
KS ci ratio: 1.054445e-01	ci left: 1.405611e-03	ci right 1.563111e-03	k: 1379	n:930000
SOX11   930000 perm   495 sec   (1878 perm/sec)   p_kst 1.482796e-03   p_cons 8.214946e-01   p_joint 1.482796e-03

Joint ci ratio: 1.048760e-01	ci left: 1.406196e-03	ci right 1.562859e-03	k: 1394	n:940000
Cons ci ratio: 1.884612e-03	ci left: 8.207350e-01	ci right 8.222843e-01	k: 772220	n:940000
KS ci ratio: 1.048760e-01	ci left: 1.406196e-03	ci right 1.562859e-03	k: 1394	n:940000
SOX11   940000 perm   504 sec   (1863 perm/sec)   p_kst 1.482979e-03   p_cons 8.215106e-01   p_joint 1.482979e-03

Joint ci ratio: 1.044280e-01	ci left: 1.403695e-03	ci right 1.559370e-03	k: 1406	n:950000
Cons ci ratio: 1.874466e-03	ci left: 8.207706e-01	ci right 8.223116e-01	k: 780465	n:950000
KS ci ratio: 1.044280e-01	ci left: 1.403695e-03	ci right 1.559370e-03	k: 1406	n:950000
SOX11   950000 perm   514 sec   (1847 perm/sec)   p_kst 1.480000e-03   p_cons 8.215421e-01   p_joint 1.480000e-03

Joint ci ratio: 1.040959e-01	ci left: 1.398203e-03	ci right 1.552747e-03	k: 1415	n:960000
Cons ci ratio: 1.864998e-03	ci left: 8.207242e-01	ci right 8.222572e-01	k: 788632	n:960000
KS ci ratio: 1.040959e-01	ci left: 1.398203e-03	ci right 1.552747e-03	k: 1415	n:960000
SOX11   960000 perm   523 sec   (1834 perm/sec)   p_kst 1.473958e-03   p_cons 8.214917e-01   p_joint 1.473958e-03

Joint ci ratio: 1.035489e-01	ci left: 1.398851e-03	ci right 1.552604e-03	k: 1430	n:970000
Cons ci ratio: 1.855640e-03	ci left: 8.206838e-01	ci right 8.222091e-01	k: 796804	n:970000
KS ci ratio: 1.035489e-01	ci left: 1.398851e-03	ci right 1.552604e-03	k: 1430	n:970000
SOX11   970000 perm   532 sec   (1822 perm/sec)   p_kst 1.474227e-03   p_cons 8.214474e-01   p_joint 1.474227e-03

Joint ci ratio: 1.029391e-01	ci left: 1.401476e-03	ci right 1.554556e-03	k: 1447	n:980000
Cons ci ratio: 1.846061e-03	ci left: 8.207015e-01	ci right 8.222190e-01	k: 805032	n:980000
KS ci ratio: 1.029391e-01	ci left: 1.401476e-03	ci right 1.554556e-03	k: 1447	n:980000
SOX11   980000 perm   542 sec   (1809 perm/sec)   p_kst 1.476531e-03   p_cons 8.214612e-01   p_joint 1.476531e-03

Joint ci ratio: 1.023050e-01	ci left: 1.405035e-03	ci right 1.557501e-03	k: 1465	n:990000
Cons ci ratio: 1.836585e-03	ci left: 8.207260e-01	ci right 8.222357e-01	k: 813267	n:990000
KS ci ratio: 1.023050e-01	ci left: 1.405035e-03	ci right 1.557501e-03	k: 1465	n:990000
SOX11   990000 perm   551 sec   (1798 perm/sec)   p_kst 1.479798e-03   p_cons 8.214818e-01   p_joint 1.479798e-03

Joint ci ratio: 1.018201e-01	ci left: 1.404627e-03	ci right 1.556284e-03	k: 1479	n:1000000
Cons ci ratio: 1.827178e-03	ci left: 8.207621e-01	ci right 8.222641e-01	k: 821514	n:1000000
KS ci ratio: 1.018201e-01	ci left: 1.404627e-03	ci right 1.556284e-03	k: 1479	n:1000000
SOX11   1000000 perm   560 sec   (1786 perm/sec)   p_kst 1.479000e-03   p_cons 8.215140e-01   p_joint 1.479000e-03

Joint ci ratio: 1.013080e-01	ci left: 1.405194e-03	ci right 1.556104e-03	k: 1494	n:1010000
Cons ci ratio: 1.818099e-03	ci left: 8.207676e-01	ci right 8.222622e-01	k: 829731	n:1010000
KS ci ratio: 1.013080e-01	ci left: 1.405194e-03	ci right 1.556104e-03	k: 1494	n:1010000
SOX11   1010000 perm   569 sec   (1775 perm/sec)   p_kst 1.479208e-03   p_cons 8.215158e-01   p_joint 1.479208e-03

Joint ci ratio: 1.009039e-01	ci left: 1.402885e-03	ci right 1.552910e-03	k: 1506	n:1020000
Cons ci ratio: 1.809148e-03	ci left: 8.207741e-01	ci right 8.222613e-01	k: 837949	n:1020000
KS ci ratio: 1.009039e-01	ci left: 1.402885e-03	ci right 1.552910e-03	k: 1506	n:1020000
SOX11   1020000 perm   578 sec   (1764 perm/sec)   p_kst 1.476471e-03   p_cons 8.215186e-01   p_joint 1.476471e-03

Joint ci ratio: 1.003725e-01	ci left: 1.404408e-03	ci right 1.553758e-03	k: 1522	n:1030000
Cons ci ratio: 1.800190e-03	ci left: 8.208028e-01	ci right 8.222827e-01	k: 846190	n:1030000
KS ci ratio: 1.003725e-01	ci left: 1.404408e-03	ci right 1.553758e-03	k: 1522	n:1030000
SOX11   1030000 perm   588 sec   (1752 perm/sec)   p_kst 1.477670e-03   p_cons 8.215437e-01   p_joint 1.477670e-03

Joint ci ratio: 9.994689e-02	ci left: 1.403091e-03	ci right 1.551631e-03	k: 1535	n:1040000
Cons ci ratio: 1.791335e-03	ci left: 8.208359e-01	ci right 8.223085e-01	k: 854436	n:1040000
KS ci ratio: 9.994689e-02	ci left: 1.403091e-03	ci right 1.551631e-03	k: 1535	n:1040000
SOX11   1040000 perm   598 sec   (1740 perm/sec)   p_kst 1.475962e-03   p_cons 8.215731e-01   p_joint 1.475962e-03

Outputting figure to mutsig2_images.part000000000164/SOX11.2_1330_1040000_0.001476_0.82157_0.001476.png
                gene_name: SOX11
               theta_stop: 0.100 
                    nperm: 1040000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0016 

Current progress: 88 percent done.
SOX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
KS ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
SOX13   10000 perm   2 sec   (6343 perm/sec)   p_kst 9.889000e-01   p_cons 6.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOX13.2_1921_10000_0.9889_0.684_1.png
                gene_name: SOX13
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SOX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.896750e-02	ci left: 4.930507e-01	ci right 5.127476e-01	k: 5029	n:10000
KS ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
SOX14   10000 perm   1 sec   (7221 perm/sec)   p_kst 7.488000e-01   p_cons 5.029000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOX14.2_727_10000_0.7488_0.5029_1.png
                gene_name: SOX14
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
Cons ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
SOX3   10000 perm   2 sec   (6662 perm/sec)   p_kst 1.700000e-03   p_cons 4.534000e-01   p_joint 1.200000e-03

Joint ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
Cons ci ratio: 3.027579e-02	ci left: 4.490292e-01	ci right 4.628836e-01	k: 9119	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
SOX3   20000 perm   3 sec   (5860 perm/sec)   p_kst 1.850000e-03   p_cons 4.559500e-01   p_joint 1.950000e-03

Joint ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
Cons ci ratio: 2.479314e-02	ci left: 4.488535e-01	ci right 4.601553e-01	k: 13635	n:30000
KS ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
SOX3   30000 perm   5 sec   (5549 perm/sec)   p_kst 1.833333e-03   p_cons 4.545000e-01   p_joint 1.833333e-03

Joint ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
Cons ci ratio: 2.146746e-02	ci left: 4.497113e-01	ci right 4.594953e-01	k: 18184	n:40000
KS ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
SOX3   40000 perm   8 sec   (5330 perm/sec)   p_kst 1.925000e-03   p_cons 4.546000e-01   p_joint 1.500000e-03

Joint ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
Cons ci ratio: 1.919040e-02	ci left: 4.505080e-01	ci right 4.592572e-01	k: 22744	n:50000
KS ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
SOX3   50000 perm   10 sec   (5175 perm/sec)   p_kst 1.820000e-03   p_cons 4.548800e-01   p_joint 1.820000e-03

Joint ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
Cons ci ratio: 1.753542e-02	ci left: 4.504099e-01	ci right 4.583945e-01	k: 27264	n:60000
KS ci ratio: 3.786195e-01	ci left: 1.446622e-03	ci right 2.136337e-03	k: 106	n:60000
SOX3   60000 perm   12 sec   (5045 perm/sec)   p_kst 1.766667e-03   p_cons 4.544000e-01   p_joint 1.250000e-03

Joint ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
Cons ci ratio: 1.619408e-02	ci left: 4.519482e-01	ci right 4.593412e-01	k: 31895	n:70000
KS ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
SOX3   70000 perm   14 sec   (4932 perm/sec)   p_kst 1.700000e-03   p_cons 4.556429e-01   p_joint 1.700000e-03

Joint ci ratio: 3.298304e-01	ci left: 1.472328e-03	ci right 2.064743e-03	k: 140	n:80000
Cons ci ratio: 1.513885e-02	ci left: 4.524941e-01	ci right 4.594091e-01	k: 36476	n:80000
KS ci ratio: 3.298304e-01	ci left: 1.472328e-03	ci right 2.064743e-03	k: 140	n:80000
SOX3   80000 perm   17 sec   (4821 perm/sec)   p_kst 1.750000e-03   p_cons 4.559500e-01   p_joint 1.750000e-03

Joint ci ratio: 3.096259e-01	ci left: 1.502925e-03	ci right 2.063304e-03	k: 159	n:90000
Cons ci ratio: 1.429019e-02	ci left: 4.520979e-01	ci right 4.586161e-01	k: 40982	n:90000
KS ci ratio: 3.096259e-01	ci left: 1.502925e-03	ci right 2.063304e-03	k: 159	n:90000
SOX3   90000 perm   20 sec   (4526 perm/sec)   p_kst 1.766667e-03   p_cons 4.553556e-01   p_joint 1.766667e-03

Joint ci ratio: 2.943829e-01	ci left: 1.509760e-03	ci right 2.039809e-03	k: 176	n:100000
Cons ci ratio: 1.354092e-02	ci left: 4.528494e-01	ci right 4.590332e-01	k: 45594	n:100000
KS ci ratio: 2.943829e-01	ci left: 1.509760e-03	ci right 2.039809e-03	k: 176	n:100000
SOX3   100000 perm   23 sec   (4401 perm/sec)   p_kst 1.760000e-03   p_cons 4.559400e-01   p_joint 1.760000e-03

Joint ci ratio: 2.826533e-01	ci left: 1.499008e-03	ci right 2.000576e-03	k: 191	n:110000
Cons ci ratio: 1.293338e-02	ci left: 4.521266e-01	ci right 4.580212e-01	k: 50058	n:110000
KS ci ratio: 2.826533e-01	ci left: 1.499008e-03	ci right 2.000576e-03	k: 191	n:110000
SOX3   110000 perm   25 sec   (4353 perm/sec)   p_kst 1.736364e-03   p_cons 4.550727e-01   p_joint 1.736364e-03

Joint ci ratio: 2.728837e-01	ci left: 1.482631e-03	ci right 1.958635e-03	k: 205	n:120000
Cons ci ratio: 1.239272e-02	ci left: 4.518546e-01	ci right 4.574976e-01	k: 54561	n:120000
KS ci ratio: 2.728837e-01	ci left: 1.482631e-03	ci right 1.958635e-03	k: 205	n:120000
SOX3   120000 perm   28 sec   (4311 perm/sec)   p_kst 1.708333e-03   p_cons 4.546750e-01   p_joint 1.708333e-03

Joint ci ratio: 2.628674e-01	ci left: 1.483397e-03	ci right 1.939292e-03	k: 221	n:130000
Cons ci ratio: 1.189543e-02	ci left: 4.524286e-01	ci right 4.578503e-01	k: 59168	n:130000
KS ci ratio: 2.628674e-01	ci left: 1.483397e-03	ci right 1.939292e-03	k: 221	n:130000
SOX3   130000 perm   31 sec   (4255 perm/sec)   p_kst 1.700000e-03   p_cons 4.551385e-01   p_joint 1.700000e-03

Joint ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
Cons ci ratio: 1.146065e-02	ci left: 4.526174e-01	ci right 4.578416e-01	k: 63732	n:140000
KS ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
SOX3   140000 perm   33 sec   (4198 perm/sec)   p_kst 1.678571e-03   p_cons 4.552286e-01   p_joint 1.678571e-03

Joint ci ratio: 2.492174e-01	ci left: 1.441585e-03	ci right 1.858058e-03	k: 246	n:150000
Cons ci ratio: 1.107537e-02	ci left: 4.525575e-01	ci right 4.576043e-01	k: 68262	n:150000
KS ci ratio: 2.492174e-01	ci left: 1.441585e-03	ci right 1.858058e-03	k: 246	n:150000
SOX3   150000 perm   36 sec   (4142 perm/sec)   p_kst 1.640000e-03   p_cons 4.550800e-01   p_joint 1.640000e-03

Joint ci ratio: 2.419793e-01	ci left: 1.439467e-03	ci right 1.841438e-03	k: 261	n:160000
Cons ci ratio: 1.072852e-02	ci left: 4.524140e-01	ci right 4.573001e-01	k: 72777	n:160000
KS ci ratio: 2.419793e-01	ci left: 1.439467e-03	ci right 1.841438e-03	k: 261	n:160000
SOX3   160000 perm   39 sec   (4084 perm/sec)   p_kst 1.631250e-03   p_cons 4.548563e-01   p_joint 1.631250e-03

Joint ci ratio: 2.366242e-01	ci left: 1.421147e-03	ci right 1.807933e-03	k: 273	n:170000
Cons ci ratio: 1.041210e-02	ci left: 4.523014e-01	ci right 4.570413e-01	k: 77294	n:170000
KS ci ratio: 2.366242e-01	ci left: 1.421147e-03	ci right 1.807933e-03	k: 273	n:170000
SOX3   170000 perm   42 sec   (4028 perm/sec)   p_kst 1.605882e-03   p_cons 4.546706e-01   p_joint 1.605882e-03

Joint ci ratio: 2.320162e-01	ci left: 1.399716e-03	ci right 1.772187e-03	k: 284	n:180000
Cons ci ratio: 1.012200e-02	ci left: 4.522088e-01	ci right 4.568149e-01	k: 81812	n:180000
KS ci ratio: 2.320162e-01	ci left: 1.399716e-03	ci right 1.772187e-03	k: 284	n:180000
SOX3   180000 perm   45 sec   (3974 perm/sec)   p_kst 1.577778e-03   p_cons 4.545111e-01   p_joint 1.577778e-03

Joint ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
Cons ci ratio: 9.855502e-03	ci left: 4.520961e-01	ci right 4.565790e-01	k: 86324	n:190000
KS ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
SOX3   190000 perm   48 sec   (3927 perm/sec)   p_kst 1.626316e-03   p_cons 4.543368e-01   p_joint 1.626316e-03

Joint ci ratio: 2.162677e-01	ci left: 1.462693e-03	ci right 1.821999e-03	k: 327	n:200000
Cons ci ratio: 9.601056e-03	ci left: 4.524059e-01	ci right 4.567754e-01	k: 90918	n:200000
KS ci ratio: 2.162677e-01	ci left: 1.462693e-03	ci right 1.821999e-03	k: 327	n:200000
SOX3   200000 perm   52 sec   (3878 perm/sec)   p_kst 1.635000e-03   p_cons 4.545900e-01   p_joint 1.635000e-03

Joint ci ratio: 2.108718e-01	ci left: 1.469665e-03	ci right 1.820512e-03	k: 344	n:210000
Cons ci ratio: 9.366158e-03	ci left: 4.526447e-01	ci right 4.569089e-01	k: 95503	n:210000
KS ci ratio: 2.108718e-01	ci left: 1.469665e-03	ci right 1.820512e-03	k: 344	n:210000
SOX3   210000 perm   55 sec   (3833 perm/sec)   p_kst 1.638095e-03   p_cons 4.547762e-01   p_joint 1.638095e-03

Joint ci ratio: 2.036192e-01	ci left: 1.510605e-03	ci right 1.857281e-03	k: 369	n:220000
Cons ci ratio: 9.151470e-03	ci left: 4.526585e-01	ci right 4.568245e-01	k: 100043	n:220000
KS ci ratio: 2.036192e-01	ci left: 1.510605e-03	ci right 1.857281e-03	k: 369	n:220000
SOX3   220000 perm   58 sec   (3782 perm/sec)   p_kst 1.677273e-03   p_cons 4.547409e-01   p_joint 1.677273e-03

Joint ci ratio: 1.980739e-01	ci left: 1.531642e-03	ci right 1.872417e-03	k: 390	n:230000
Cons ci ratio: 8.952547e-03	ci left: 4.525808e-01	ci right 4.566551e-01	k: 104562	n:230000
KS ci ratio: 1.980739e-01	ci left: 1.531642e-03	ci right 1.872417e-03	k: 390	n:230000
SOX3   230000 perm   62 sec   (3736 perm/sec)   p_kst 1.695652e-03   p_cons 4.546174e-01   p_joint 1.695652e-03

Joint ci ratio: 1.948627e-01	ci left: 1.519325e-03	ci right 1.851229e-03	k: 403	n:240000
Cons ci ratio: 8.762152e-03	ci left: 4.527313e-01	ci right 4.567198e-01	k: 109134	n:240000
KS ci ratio: 1.948627e-01	ci left: 1.519325e-03	ci right 1.851229e-03	k: 403	n:240000
SOX3   240000 perm   65 sec   (3687 perm/sec)   p_kst 1.679167e-03   p_cons 4.547250e-01   p_joint 1.679167e-03

Joint ci ratio: 1.908878e-01	ci left: 1.523269e-03	ci right 1.848459e-03	k: 420	n:250000
Cons ci ratio: 8.588049e-03	ci left: 4.526027e-01	ci right 4.565104e-01	k: 113639	n:250000
KS ci ratio: 1.908878e-01	ci left: 1.523269e-03	ci right 1.848459e-03	k: 420	n:250000
SOX3   250000 perm   69 sec   (3639 perm/sec)   p_kst 1.680000e-03   p_cons 4.545560e-01   p_joint 1.680000e-03

Joint ci ratio: 1.882259e-01	ci left: 1.508644e-03	ci right 1.825707e-03	k: 432	n:260000
Cons ci ratio: 8.418898e-03	ci left: 4.527807e-01	ci right 4.566126e-01	k: 118221	n:260000
KS ci ratio: 1.882259e-01	ci left: 1.508644e-03	ci right 1.825707e-03	k: 432	n:260000
SOX3   260000 perm   72 sec   (3597 perm/sec)   p_kst 1.661538e-03   p_cons 4.546962e-01   p_joint 1.661538e-03

Joint ci ratio: 1.838196e-01	ci left: 1.526926e-03	ci right 1.839482e-03	k: 453	n:270000
Cons ci ratio: 8.262817e-03	ci left: 4.527390e-01	ci right 4.564990e-01	k: 122747	n:270000
KS ci ratio: 1.838196e-01	ci left: 1.526926e-03	ci right 1.839482e-03	k: 453	n:270000
SOX3   270000 perm   76 sec   (3554 perm/sec)   p_kst 1.677778e-03   p_cons 4.546185e-01   p_joint 1.677778e-03

Joint ci ratio: 1.798988e-01	ci left: 1.540571e-03	ci right 1.848462e-03	k: 473	n:280000
Cons ci ratio: 8.111075e-03	ci left: 4.529471e-01	ci right 4.566395e-01	k: 127342	n:280000
KS ci ratio: 1.798988e-01	ci left: 1.540571e-03	ci right 1.848462e-03	k: 473	n:280000
SOX3   280000 perm   80 sec   (3511 perm/sec)   p_kst 1.689286e-03   p_cons 4.547929e-01   p_joint 1.689286e-03

Joint ci ratio: 1.767570e-01	ci left: 1.543452e-03	ci right 1.845956e-03	k: 490	n:290000
Cons ci ratio: 7.966287e-03	ci left: 4.532105e-01	ci right 4.568387e-01	k: 131957	n:290000
KS ci ratio: 1.767570e-01	ci left: 1.543452e-03	ci right 1.845956e-03	k: 490	n:290000
SOX3   290000 perm   84 sec   (3469 perm/sec)   p_kst 1.689655e-03   p_cons 4.550241e-01   p_joint 1.689655e-03

Joint ci ratio: 1.749861e-01	ci left: 1.523868e-03	ci right 1.819225e-03	k: 500	n:300000
Cons ci ratio: 7.833510e-03	ci left: 4.531702e-01	ci right 4.567373e-01	k: 136486	n:300000
KS ci ratio: 1.749861e-01	ci left: 1.523868e-03	ci right 1.819225e-03	k: 500	n:300000
SOX3   300000 perm   88 sec   (3423 perm/sec)   p_kst 1.666667e-03   p_cons 4.549533e-01   p_joint 1.666667e-03

Joint ci ratio: 1.725920e-01	ci left: 1.517908e-03	ci right 1.807665e-03	k: 514	n:310000
Cons ci ratio: 7.703800e-03	ci left: 4.533490e-01	ci right 4.568582e-01	k: 141082	n:310000
KS ci ratio: 1.725920e-01	ci left: 1.517908e-03	ci right 1.807665e-03	k: 514	n:310000
SOX3   310000 perm   92 sec   (3383 perm/sec)   p_kst 1.658065e-03   p_cons 4.551032e-01   p_joint 1.658065e-03

Joint ci ratio: 1.693344e-01	ci left: 1.530300e-03	ci right 1.816346e-03	k: 534	n:320000
Cons ci ratio: 7.580613e-03	ci left: 4.534984e-01	ci right 4.569524e-01	k: 145672	n:320000
KS ci ratio: 1.693344e-01	ci left: 1.530300e-03	ci right 1.816346e-03	k: 534	n:320000
SOX3   320000 perm   96 sec   (3344 perm/sec)   p_kst 1.668750e-03   p_cons 4.552250e-01   p_joint 1.668750e-03

Joint ci ratio: 1.664047e-01	ci left: 1.539085e-03	ci right 1.821297e-03	k: 553	n:330000
Cons ci ratio: 7.463607e-03	ci left: 4.536089e-01	ci right 4.570101e-01	k: 150252	n:330000
KS ci ratio: 1.664047e-01	ci left: 1.539085e-03	ci right 1.821297e-03	k: 553	n:330000
SOX3   330000 perm   100 sec   (3307 perm/sec)   p_kst 1.675758e-03   p_cons 4.553091e-01   p_joint 1.675758e-03

Joint ci ratio: 1.633368e-01	ci left: 1.553035e-03	ci right 1.832039e-03	k: 574	n:340000
Cons ci ratio: 7.349765e-03	ci left: 4.538543e-01	ci right 4.572053e-01	k: 154880	n:340000
KS ci ratio: 1.633368e-01	ci left: 1.553035e-03	ci right 1.832039e-03	k: 574	n:340000
SOX3   340000 perm   104 sec   (3268 perm/sec)   p_kst 1.688235e-03   p_cons 4.555294e-01   p_joint 1.688235e-03

Joint ci ratio: 1.602978e-01	ci left: 1.568975e-03	ci right 1.845094e-03	k: 596	n:350000
Cons ci ratio: 7.242728e-03	ci left: 4.539662e-01	ci right 4.572689e-01	k: 159466	n:350000
KS ci ratio: 1.602978e-01	ci left: 1.568975e-03	ci right 1.845094e-03	k: 596	n:350000
SOX3   350000 perm   108 sec   (3232 perm/sec)   p_kst 1.702857e-03   p_cons 4.556171e-01   p_joint 1.702857e-03

Joint ci ratio: 1.583216e-01	ci left: 1.565398e-03	ci right 1.837168e-03	k: 611	n:360000
Cons ci ratio: 7.143353e-03	ci left: 4.538555e-01	ci right 4.571119e-01	k: 163974	n:360000
KS ci ratio: 1.583216e-01	ci left: 1.565398e-03	ci right 1.837168e-03	k: 611	n:360000
SOX3   360000 perm   113 sec   (3196 perm/sec)   p_kst 1.697222e-03   p_cons 4.554833e-01   p_joint 1.697222e-03

Joint ci ratio: 1.562920e-01	ci left: 1.564631e-03	ci right 1.832459e-03	k: 627	n:370000
Cons ci ratio: 7.045579e-03	ci left: 4.539186e-01	ci right 4.571307e-01	k: 168544	n:370000
KS ci ratio: 1.562920e-01	ci left: 1.564631e-03	ci right 1.832459e-03	k: 627	n:370000
SOX3   370000 perm   117 sec   (3159 perm/sec)   p_kst 1.694595e-03   p_cons 4.555243e-01   p_joint 1.694595e-03

Joint ci ratio: 1.540990e-01	ci left: 1.568985e-03	ci right 1.833443e-03	k: 645	n:380000
Cons ci ratio: 6.953741e-03	ci left: 4.538340e-01	ci right 4.570035e-01	k: 173059	n:380000
KS ci ratio: 1.540990e-01	ci left: 1.568985e-03	ci right 1.833443e-03	k: 645	n:380000
SOX3   380000 perm   122 sec   (3123 perm/sec)   p_kst 1.697368e-03   p_cons 4.554184e-01   p_joint 1.697368e-03

Joint ci ratio: 1.525723e-01	ci left: 1.560809e-03	ci right 1.821044e-03	k: 658	n:390000
Cons ci ratio: 6.863097e-03	ci left: 4.539207e-01	ci right 4.570492e-01	k: 177639	n:390000
KS ci ratio: 1.525723e-01	ci left: 1.560809e-03	ci right 1.821044e-03	k: 658	n:390000
SOX3   390000 perm   126 sec   (3089 perm/sec)   p_kst 1.687179e-03   p_cons 4.554846e-01   p_joint 1.687179e-03

Joint ci ratio: 1.497566e-01	ci left: 1.581926e-03	ci right 1.840378e-03	k: 683	n:400000
Cons ci ratio: 6.777853e-03	ci left: 4.538608e-01	ci right 4.569499e-01	k: 182162	n:400000
KS ci ratio: 1.497566e-01	ci left: 1.581926e-03	ci right 1.840378e-03	k: 683	n:400000
SOX3   400000 perm   131 sec   (3055 perm/sec)   p_kst 1.707500e-03   p_cons 4.554050e-01   p_joint 1.707500e-03

Joint ci ratio: 1.479296e-01	ci left: 1.583262e-03	ci right 1.838497e-03	k: 700	n:410000
Cons ci ratio: 6.694985e-03	ci left: 4.538577e-01	ci right 4.569088e-01	k: 186707	n:410000
KS ci ratio: 1.479296e-01	ci left: 1.583262e-03	ci right 1.838497e-03	k: 700	n:410000
SOX3   410000 perm   136 sec   (3022 perm/sec)   p_kst 1.707317e-03   p_cons 4.553829e-01   p_joint 1.707317e-03

Joint ci ratio: 1.461678e-01	ci left: 1.584552e-03	ci right 1.836688e-03	k: 717	n:420000
Cons ci ratio: 6.616100e-03	ci left: 4.537788e-01	ci right 4.567933e-01	k: 191220	n:420000
KS ci ratio: 1.461678e-01	ci left: 1.584552e-03	ci right 1.836688e-03	k: 717	n:420000
SOX3   420000 perm   140 sec   (2990 perm/sec)   p_kst 1.707143e-03   p_cons 4.552857e-01   p_joint 1.707143e-03

Joint ci ratio: 1.447638e-01	ci left: 1.579075e-03	ci right 1.827717e-03	k: 731	n:430000
Cons ci ratio: 6.538344e-03	ci left: 4.538246e-01	ci right 4.568039e-01	k: 195785	n:430000
KS ci ratio: 1.447638e-01	ci left: 1.579075e-03	ci right 1.827717e-03	k: 731	n:430000
SOX3   430000 perm   145 sec   (2958 perm/sec)   p_kst 1.700000e-03   p_cons 4.553140e-01   p_joint 1.700000e-03

Joint ci ratio: 1.435925e-01	ci left: 1.569475e-03	ci right 1.814434e-03	k: 743	n:440000
Cons ci ratio: 6.462645e-03	ci left: 4.539163e-01	ci right 4.568615e-01	k: 200371	n:440000
KS ci ratio: 1.435925e-01	ci left: 1.569475e-03	ci right 1.814434e-03	k: 743	n:440000
SOX3   440000 perm   150 sec   (2927 perm/sec)   p_kst 1.688636e-03   p_cons 4.553886e-01   p_joint 1.688636e-03

Joint ci ratio: 1.412378e-01	ci left: 1.588175e-03	ci right 1.831646e-03	k: 768	n:450000
Cons ci ratio: 6.390117e-03	ci left: 4.539575e-01	ci right 4.568698e-01	k: 204936	n:450000
KS ci ratio: 1.412378e-01	ci left: 1.588175e-03	ci right 1.831646e-03	k: 768	n:450000
SOX3   450000 perm   156 sec   (2890 perm/sec)   p_kst 1.706667e-03   p_cons 4.554133e-01   p_joint 1.706667e-03

Joint ci ratio: 1.400596e-01	ci left: 1.580915e-03	ci right 1.821083e-03	k: 781	n:460000
Cons ci ratio: 6.320836e-03	ci left: 4.539296e-01	ci right 4.568101e-01	k: 209470	n:460000
KS ci ratio: 1.400596e-01	ci left: 1.580915e-03	ci right 1.821083e-03	k: 781	n:460000
SOX3   460000 perm   161 sec   (2858 perm/sec)   p_kst 1.697826e-03   p_cons 4.553696e-01   p_joint 1.697826e-03

Joint ci ratio: 1.380433e-01	ci left: 1.594513e-03	ci right 1.832973e-03	k: 804	n:470000
Cons ci ratio: 6.253090e-03	ci left: 4.539563e-01	ci right 4.568059e-01	k: 214029	n:470000
KS ci ratio: 1.380433e-01	ci left: 1.594513e-03	ci right 1.832973e-03	k: 804	n:470000
SOX3   470000 perm   167 sec   (2820 perm/sec)   p_kst 1.710638e-03   p_cons 4.553809e-01   p_joint 1.710638e-03

Joint ci ratio: 1.369426e-01	ci left: 1.587446e-03	ci right 1.822801e-03	k: 817	n:480000
Cons ci ratio: 6.185501e-03	ci left: 4.541403e-01	ci right 4.569602e-01	k: 218664	n:480000
KS ci ratio: 1.369426e-01	ci left: 1.587446e-03	ci right 1.822801e-03	k: 817	n:480000
SOX3   480000 perm   172 sec   (2791 perm/sec)   p_kst 1.702083e-03   p_cons 4.555500e-01   p_joint 1.702083e-03

Joint ci ratio: 1.353791e-01	ci left: 1.592504e-03	ci right 1.825696e-03	k: 836	n:490000
Cons ci ratio: 6.122651e-03	ci left: 4.541069e-01	ci right 4.568977e-01	k: 223196	n:490000
KS ci ratio: 1.353791e-01	ci left: 1.592504e-03	ci right 1.825696e-03	k: 836	n:490000
SOX3   490000 perm   178 sec   (2761 perm/sec)   p_kst 1.706122e-03   p_cons 4.555020e-01   p_joint 1.706122e-03

Joint ci ratio: 1.340249e-01	ci left: 1.593508e-03	ci right 1.824327e-03	k: 853	n:500000
Cons ci ratio: 6.061018e-03	ci left: 4.541289e-01	ci right 4.568917e-01	k: 227755	n:500000
KS ci ratio: 1.340249e-01	ci left: 1.593508e-03	ci right 1.824327e-03	k: 853	n:500000
SOX3   500000 perm   183 sec   (2732 perm/sec)   p_kst 1.706000e-03   p_cons 4.555100e-01   p_joint 1.706000e-03

Joint ci ratio: 1.327105e-01	ci left: 1.594484e-03	ci right 1.823001e-03	k: 870	n:510000
Cons ci ratio: 6.002824e-03	ci left: 4.540168e-01	ci right 4.567523e-01	k: 232246	n:510000
KS ci ratio: 1.327105e-01	ci left: 1.594484e-03	ci right 1.823001e-03	k: 870	n:510000
SOX3   510000 perm   189 sec   (2704 perm/sec)   p_kst 1.705882e-03   p_cons 4.553843e-01   p_joint 1.705882e-03

Joint ci ratio: 1.319561e-01	ci left: 1.582414e-03	ci right 1.807811e-03	k: 880	n:520000
Cons ci ratio: 5.944821e-03	ci left: 4.540303e-01	ci right 4.567394e-01	k: 236800	n:520000
KS ci ratio: 1.319561e-01	ci left: 1.582414e-03	ci right 1.807811e-03	k: 880	n:520000
SOX3   520000 perm   194 sec   (2676 perm/sec)   p_kst 1.692308e-03   p_cons 4.553846e-01   p_joint 1.692308e-03

Joint ci ratio: 1.310671e-01	ci left: 1.574454e-03	ci right 1.797088e-03	k: 892	n:530000
Cons ci ratio: 5.889879e-03	ci left: 4.539246e-01	ci right 4.566079e-01	k: 241291	n:530000
KS ci ratio: 1.310671e-01	ci left: 1.574454e-03	ci right 1.797088e-03	k: 892	n:530000
SOX3   530000 perm   200 sec   (2649 perm/sec)   p_kst 1.683019e-03   p_cons 4.552660e-01   p_joint 1.683019e-03

Joint ci ratio: 1.301239e-01	ci left: 1.568584e-03	ci right 1.788669e-03	k: 905	n:540000
Cons ci ratio: 5.837216e-03	ci left: 4.537563e-01	ci right 4.564145e-01	k: 245746	n:540000
KS ci ratio: 1.301239e-01	ci left: 1.568584e-03	ci right 1.788669e-03	k: 905	n:540000
SOX3   540000 perm   206 sec   (2623 perm/sec)   p_kst 1.675926e-03   p_cons 4.550852e-01   p_joint 1.675926e-03

Joint ci ratio: 1.288500e-01	ci left: 1.571732e-03	ci right 1.789935e-03	k: 923	n:550000
Cons ci ratio: 5.784944e-03	ci left: 4.536797e-01	ci right 4.563136e-01	k: 250248	n:550000
KS ci ratio: 1.288500e-01	ci left: 1.571732e-03	ci right 1.789935e-03	k: 923	n:550000
SOX3   550000 perm   212 sec   (2597 perm/sec)   p_kst 1.678182e-03   p_cons 4.549964e-01   p_joint 1.678182e-03

Joint ci ratio: 1.276808e-01	ci left: 1.573048e-03	ci right 1.789302e-03	k: 940	n:560000
Cons ci ratio: 5.731243e-03	ci left: 4.538486e-01	ci right 4.564590e-01	k: 254886	n:560000
KS ci ratio: 1.276808e-01	ci left: 1.573048e-03	ci right 1.789302e-03	k: 940	n:560000
SOX3   560000 perm   218 sec   (2574 perm/sec)   p_kst 1.678571e-03   p_cons 4.551536e-01   p_joint 1.678571e-03

Joint ci ratio: 1.260823e-01	ci left: 1.586221e-03	ci right 1.801351e-03	k: 964	n:570000
Cons ci ratio: 5.680376e-03	ci left: 4.538925e-01	ci right 4.564799e-01	k: 259456	n:570000
KS ci ratio: 1.260823e-01	ci left: 1.586221e-03	ci right 1.801351e-03	k: 964	n:570000
SOX3   570000 perm   224 sec   (2550 perm/sec)   p_kst 1.691228e-03   p_cons 4.551860e-01   p_joint 1.691228e-03

Joint ci ratio: 1.251779e-01	ci left: 1.582251e-03	ci right 1.795190e-03	k: 978	n:580000
Cons ci ratio: 5.632151e-03	ci left: 4.538195e-01	ci right 4.563844e-01	k: 263959	n:580000
KS ci ratio: 1.251779e-01	ci left: 1.582251e-03	ci right 1.795190e-03	k: 978	n:580000
SOX3   580000 perm   229 sec   (2528 perm/sec)   p_kst 1.686207e-03   p_cons 4.551017e-01   p_joint 1.686207e-03

Joint ci ratio: 1.242300e-01	ci left: 1.580064e-03	ci right 1.790979e-03	k: 993	n:590000
Cons ci ratio: 5.583779e-03	ci left: 4.538694e-01	ci right 4.564124e-01	k: 268533	n:590000
KS ci ratio: 1.242300e-01	ci left: 1.580064e-03	ci right 1.790979e-03	k: 993	n:590000
SOX3   590000 perm   235 sec   (2506 perm/sec)   p_kst 1.683051e-03   p_cons 4.551407e-01   p_joint 1.683051e-03

Joint ci ratio: 1.229377e-01	ci left: 1.587648e-03	ci right 1.797211e-03	k: 1014	n:600000
Cons ci ratio: 5.537934e-03	ci left: 4.538010e-01	ci right 4.563227e-01	k: 273037	n:600000
KS ci ratio: 1.229377e-01	ci left: 1.587648e-03	ci right 1.797211e-03	k: 1014	n:600000
SOX3   600000 perm   242 sec   (2484 perm/sec)   p_kst 1.690000e-03   p_cons 4.550617e-01   p_joint 1.690000e-03

Joint ci ratio: 1.220394e-01	ci left: 1.585457e-03	ci right 1.793092e-03	k: 1029	n:610000
Cons ci ratio: 5.493000e-03	ci left: 4.537530e-01	ci right 4.562540e-01	k: 277552	n:610000
KS ci ratio: 1.220394e-01	ci left: 1.585457e-03	ci right 1.793092e-03	k: 1029	n:610000
SOX3   610000 perm   248 sec   (2461 perm/sec)   p_kst 1.686885e-03   p_cons 4.550033e-01   p_joint 1.686885e-03

Joint ci ratio: 1.208136e-01	ci left: 1.592728e-03	ci right 1.799070e-03	k: 1050	n:620000
Cons ci ratio: 5.448594e-03	ci left: 4.537567e-01	ci right 4.562373e-01	k: 282098	n:620000
KS ci ratio: 1.208136e-01	ci left: 1.592728e-03	ci right 1.799070e-03	k: 1050	n:620000
SOX3   620000 perm   254 sec   (2439 perm/sec)   p_kst 1.693548e-03   p_cons 4.549968e-01   p_joint 1.693548e-03

Joint ci ratio: 1.197360e-01	ci left: 1.596698e-03	ci right 1.801578e-03	k: 1069	n:630000
Cons ci ratio: 5.405178e-03	ci left: 4.537666e-01	ci right 4.562275e-01	k: 286648	n:630000
KS ci ratio: 1.197360e-01	ci left: 1.596698e-03	ci right 1.801578e-03	k: 1069	n:630000
SOX3   630000 perm   260 sec   (2419 perm/sec)   p_kst 1.696825e-03   p_cons 4.549968e-01   p_joint 1.696825e-03

Joint ci ratio: 1.187413e-01	ci left: 1.599036e-03	ci right 1.802392e-03	k: 1087	n:640000
Cons ci ratio: 5.362969e-03	ci left: 4.537591e-01	ci right 4.562007e-01	k: 291187	n:640000
KS ci ratio: 1.187413e-01	ci left: 1.599036e-03	ci right 1.802392e-03	k: 1087	n:640000
SOX3   640000 perm   267 sec   (2396 perm/sec)   p_kst 1.698438e-03   p_cons 4.549797e-01   p_joint 1.698438e-03

Joint ci ratio: 1.179849e-01	ci left: 1.595336e-03	ci right 1.796839e-03	k: 1101	n:650000
Cons ci ratio: 5.321833e-03	ci left: 4.537427e-01	ci right 4.561654e-01	k: 295720	n:650000
KS ci ratio: 1.179849e-01	ci left: 1.595336e-03	ci right 1.796839e-03	k: 1101	n:650000
SOX3   650000 perm   274 sec   (2376 perm/sec)   p_kst 1.693846e-03   p_cons 4.549538e-01   p_joint 1.693846e-03

Joint ci ratio: 1.171902e-01	ci left: 1.593223e-03	ci right 1.793010e-03	k: 1116	n:660000
Cons ci ratio: 5.281807e-03	ci left: 4.537102e-01	ci right 4.561144e-01	k: 300242	n:660000
KS ci ratio: 1.171902e-01	ci left: 1.593223e-03	ci right 1.793010e-03	k: 1116	n:660000
SOX3   660000 perm   280 sec   (2356 perm/sec)   p_kst 1.690909e-03   p_cons 4.549121e-01   p_joint 1.690909e-03

Joint ci ratio: 1.161547e-01	ci left: 1.598423e-03	ci right 1.796970e-03	k: 1136	n:670000
Cons ci ratio: 5.241866e-03	ci left: 4.537548e-01	ci right 4.561411e-01	k: 304815	n:670000
KS ci ratio: 1.161547e-01	ci left: 1.598423e-03	ci right 1.796970e-03	k: 1136	n:670000
SOX3   670000 perm   287 sec   (2335 perm/sec)   p_kst 1.695522e-03   p_cons 4.549478e-01   p_joint 1.695522e-03

Joint ci ratio: 1.153460e-01	ci left: 1.597765e-03	ci right 1.794754e-03	k: 1152	n:680000
Cons ci ratio: 5.202616e-03	ci left: 4.538173e-01	ci right 4.561860e-01	k: 309401	n:680000
KS ci ratio: 1.153460e-01	ci left: 1.597765e-03	ci right 1.794754e-03	k: 1152	n:680000
SOX3   680000 perm   294 sec   (2314 perm/sec)   p_kst 1.694118e-03   p_cons 4.550015e-01   p_joint 1.694118e-03

Joint ci ratio: 1.145540e-01	ci left: 1.597131e-03	ci right 1.792598e-03	k: 1168	n:690000
Cons ci ratio: 5.165775e-03	ci left: 4.537303e-01	ci right 4.560817e-01	k: 313885	n:690000
KS ci ratio: 1.145540e-01	ci left: 1.597131e-03	ci right 1.792598e-03	k: 1168	n:690000
SOX3   690000 perm   301 sec   (2293 perm/sec)   p_kst 1.692754e-03   p_cons 4.549058e-01   p_joint 1.692754e-03

Joint ci ratio: 1.138744e-01	ci left: 1.593743e-03	ci right 1.787561e-03	k: 1182	n:700000
Cons ci ratio: 5.129735e-03	ci left: 4.536430e-01	ci right 4.559774e-01	k: 318367	n:700000
KS ci ratio: 1.138744e-01	ci left: 1.593743e-03	ci right 1.787561e-03	k: 1182	n:700000
SOX3   700000 perm   308 sec   (2273 perm/sec)   p_kst 1.688571e-03   p_cons 4.548100e-01   p_joint 1.688571e-03

Joint ci ratio: 1.131594e-01	ci left: 1.591823e-03	ci right 1.784110e-03	k: 1197	n:710000
Cons ci ratio: 5.093932e-03	ci left: 4.536074e-01	ci right 4.559253e-01	k: 322884	n:710000
KS ci ratio: 1.131594e-01	ci left: 1.591823e-03	ci right 1.784110e-03	k: 1197	n:710000
SOX3   710000 perm   315 sec   (2254 perm/sec)   p_kst 1.685915e-03   p_cons 4.547662e-01   p_joint 1.685915e-03

Joint ci ratio: 1.123650e-01	ci left: 1.592659e-03	ci right 1.783608e-03	k: 1214	n:720000
Cons ci ratio: 5.057919e-03	ci left: 4.536660e-01	ci right 4.559677e-01	k: 327468	n:720000
KS ci ratio: 1.123650e-01	ci left: 1.592659e-03	ci right 1.783608e-03	k: 1214	n:720000
SOX3   720000 perm   322 sec   (2235 perm/sec)   p_kst 1.686111e-03   p_cons 4.548167e-01   p_joint 1.686111e-03

Joint ci ratio: 1.115870e-01	ci left: 1.593478e-03	ci right 1.783114e-03	k: 1231	n:730000
Cons ci ratio: 5.023298e-03	ci left: 4.536599e-01	ci right 4.559459e-01	k: 332006	n:730000
KS ci ratio: 1.115870e-01	ci left: 1.593478e-03	ci right 1.783114e-03	k: 1231	n:730000
SOX3   730000 perm   330 sec   (2213 perm/sec)   p_kst 1.686301e-03   p_cons 4.548027e-01   p_joint 1.686301e-03

Joint ci ratio: 1.108250e-01	ci left: 1.594278e-03	ci right 1.782630e-03	k: 1248	n:740000
Cons ci ratio: 4.990466e-03	ci left: 4.535461e-01	ci right 4.558164e-01	k: 336464	n:740000
KS ci ratio: 1.108250e-01	ci left: 1.594278e-03	ci right 1.782630e-03	k: 1248	n:740000
SOX3   740000 perm   337 sec   (2195 perm/sec)   p_kst 1.686486e-03   p_cons 4.546811e-01   p_joint 1.686486e-03

Joint ci ratio: 1.099480e-01	ci left: 1.598952e-03	ci right 1.786264e-03	k: 1268	n:750000
Cons ci ratio: 4.956695e-03	ci left: 4.535926e-01	ci right 4.558478e-01	k: 341040	n:750000
KS ci ratio: 1.099480e-01	ci left: 1.598952e-03	ci right 1.786264e-03	k: 1268	n:750000
SOX3   750000 perm   345 sec   (2176 perm/sec)   p_kst 1.690667e-03   p_cons 4.547200e-01   p_joint 1.690667e-03

Joint ci ratio: 1.091339e-01	ci left: 1.602228e-03	ci right 1.788445e-03	k: 1287	n:760000
Cons ci ratio: 4.923902e-03	ci left: 4.536076e-01	ci right 4.558480e-01	k: 345593	n:760000
KS ci ratio: 1.091339e-01	ci left: 1.602228e-03	ci right 1.788445e-03	k: 1287	n:760000
SOX3   760000 perm   352 sec   (2158 perm/sec)   p_kst 1.693421e-03   p_cons 4.547276e-01   p_joint 1.693421e-03

Joint ci ratio: 1.082132e-01	ci left: 1.609215e-03	ci right 1.794566e-03	k: 1309	n:770000
Cons ci ratio: 4.891789e-03	ci left: 4.536185e-01	ci right 4.558442e-01	k: 350143	n:770000
KS ci ratio: 1.082132e-01	ci left: 1.609215e-03	ci right 1.794566e-03	k: 1309	n:770000
SOX3   770000 perm   360 sec   (2141 perm/sec)   p_kst 1.700000e-03   p_cons 4.547312e-01   p_joint 1.700000e-03

Joint ci ratio: 1.075585e-01	ci left: 1.608543e-03	ci right 1.792625e-03	k: 1325	n:780000
Cons ci ratio: 4.860133e-03	ci left: 4.536458e-01	ci right 4.558571e-01	k: 354706	n:780000
KS ci ratio: 1.075585e-01	ci left: 1.608543e-03	ci right 1.792625e-03	k: 1325	n:780000
SOX3   780000 perm   367 sec   (2124 perm/sec)   p_kst 1.698718e-03   p_cons 4.547513e-01   p_joint 1.698718e-03

Joint ci ratio: 1.067959e-01	ci left: 1.611588e-03	ci right 1.794628e-03	k: 1344	n:790000
Cons ci ratio: 4.829762e-03	ci left: 4.536028e-01	ci right 4.558001e-01	k: 359214	n:790000
KS ci ratio: 1.067959e-01	ci left: 1.611588e-03	ci right 1.794628e-03	k: 1344	n:790000
SOX3   790000 perm   376 sec   (2101 perm/sec)   p_kst 1.701266e-03   p_cons 4.547013e-01   p_joint 1.701266e-03

Joint ci ratio: 1.062838e-01	ci left: 1.607260e-03	ci right 1.788879e-03	k: 1357	n:800000
Cons ci ratio: 4.799058e-03	ci left: 4.536534e-01	ci right 4.558369e-01	k: 363796	n:800000
KS ci ratio: 1.062838e-01	ci left: 1.607260e-03	ci right 1.788879e-03	k: 1357	n:800000
SOX3   800000 perm   384 sec   (2082 perm/sec)   p_kst 1.696250e-03   p_cons 4.547450e-01   p_joint 1.696250e-03

Joint ci ratio: 1.056247e-01	ci left: 1.607849e-03	ci right 1.788337e-03	k: 1374	n:810000
Cons ci ratio: 4.768932e-03	ci left: 4.537028e-01	ci right 4.558728e-01	k: 368378	n:810000
KS ci ratio: 1.056247e-01	ci left: 1.607849e-03	ci right 1.788337e-03	k: 1374	n:810000
SOX3   810000 perm   392 sec   (2066 perm/sec)   p_kst 1.696296e-03   p_cons 4.547877e-01   p_joint 1.696296e-03

Joint ci ratio: 1.049023e-01	ci left: 1.610802e-03	ci right 1.790309e-03	k: 1393	n:820000
Cons ci ratio: 4.739402e-03	ci left: 4.537474e-01	ci right 4.559042e-01	k: 372957	n:820000
KS ci ratio: 1.049023e-01	ci left: 1.610802e-03	ci right 1.790309e-03	k: 1393	n:820000
SOX3   820000 perm   400 sec   (2049 perm/sec)   p_kst 1.698780e-03   p_cons 4.548256e-01   p_joint 1.698780e-03

Joint ci ratio: 1.042684e-01	ci left: 1.611341e-03	ci right 1.789756e-03	k: 1410	n:830000
Cons ci ratio: 4.710699e-03	ci left: 4.537608e-01	ci right 4.559046e-01	k: 377511	n:830000
KS ci ratio: 1.042684e-01	ci left: 1.611341e-03	ci right 1.789756e-03	k: 1410	n:830000
SOX3   830000 perm   408 sec   (2034 perm/sec)   p_kst 1.698795e-03   p_cons 4.548325e-01   p_joint 1.698795e-03

Joint ci ratio: 1.037916e-01	ci left: 1.607231e-03	ci right 1.784328e-03	k: 1423	n:840000
Cons ci ratio: 4.682714e-03	ci left: 4.537525e-01	ci right 4.558835e-01	k: 382047	n:840000
KS ci ratio: 1.037916e-01	ci left: 1.607231e-03	ci right 1.784328e-03	k: 1423	n:840000
SOX3   840000 perm   416 sec   (2018 perm/sec)   p_kst 1.694048e-03   p_cons 4.548179e-01   p_joint 1.694048e-03

Joint ci ratio: 1.032853e-01	ci left: 1.604367e-03	ci right 1.780233e-03	k: 1437	n:850000
Cons ci ratio: 4.655696e-03	ci left: 4.536939e-01	ci right 4.558123e-01	k: 386540	n:850000
KS ci ratio: 1.032853e-01	ci left: 1.604367e-03	ci right 1.780233e-03	k: 1437	n:850000
SOX3   850000 perm   424 sec   (2003 perm/sec)   p_kst 1.690588e-03   p_cons 4.547529e-01   p_joint 1.690588e-03

Joint ci ratio: 1.027509e-01	ci left: 1.602704e-03	ci right 1.777424e-03	k: 1452	n:860000
Cons ci ratio: 4.628067e-03	ci left: 4.537518e-01	ci right 4.558578e-01	k: 391132	n:860000
KS ci ratio: 1.027509e-01	ci left: 1.602704e-03	ci right 1.777424e-03	k: 1452	n:860000
SOX3   860000 perm   432 sec   (1989 perm/sec)   p_kst 1.688372e-03   p_cons 4.548047e-01   p_joint 1.688372e-03

Joint ci ratio: 1.020508e-01	ci left: 1.606682e-03	ci right 1.780571e-03	k: 1472	n:870000
Cons ci ratio: 4.601168e-03	ci left: 4.537820e-01	ci right 4.558758e-01	k: 395701	n:870000
KS ci ratio: 1.020508e-01	ci left: 1.606682e-03	ci right 1.780571e-03	k: 1472	n:870000
SOX3   870000 perm   440 sec   (1975 perm/sec)   p_kst 1.691954e-03   p_cons 4.548287e-01   p_joint 1.691954e-03

Joint ci ratio: 1.012629e-01	ci left: 1.613896e-03	ci right 1.787137e-03	k: 1495	n:880000
Cons ci ratio: 4.574985e-03	ci left: 4.537842e-01	ci right 4.558661e-01	k: 400246	n:880000
KS ci ratio: 1.012629e-01	ci left: 1.613896e-03	ci right 1.787137e-03	k: 1495	n:880000
SOX3   880000 perm   449 sec   (1961 perm/sec)   p_kst 1.698864e-03   p_cons 4.548250e-01   p_joint 1.698864e-03

Joint ci ratio: 1.007592e-01	ci left: 1.612191e-03	ci right 1.784337e-03	k: 1510	n:890000
Cons ci ratio: 4.548852e-03	ci left: 4.538291e-01	ci right 4.558993e-01	k: 404829	n:890000
KS ci ratio: 1.007592e-01	ci left: 1.612191e-03	ci right 1.784337e-03	k: 1510	n:890000
SOX3   890000 perm   457 sec   (1948 perm/sec)   p_kst 1.696629e-03   p_cons 4.548640e-01   p_joint 1.696629e-03

Joint ci ratio: 1.000660e-01	ci left: 1.617025e-03	ci right 1.788430e-03	k: 1531	n:900000
Cons ci ratio: 4.522960e-03	ci left: 4.538952e-01	ci right 4.559539e-01	k: 409432	n:900000
KS ci ratio: 1.000660e-01	ci left: 1.617025e-03	ci right 1.788430e-03	k: 1531	n:900000
SOX3   900000 perm   465 sec   (1934 perm/sec)   p_kst 1.701111e-03   p_cons 4.549244e-01   p_joint 1.701111e-03

Joint ci ratio: 9.957979e-02	ci left: 1.615327e-03	ci right 1.785672e-03	k: 1546	n:910000
Cons ci ratio: 4.498401e-03	ci left: 4.538611e-01	ci right 4.559084e-01	k: 413945	n:910000
KS ci ratio: 9.957979e-02	ci left: 1.615327e-03	ci right 1.785672e-03	k: 1546	n:910000
SOX3   910000 perm   474 sec   (1920 perm/sec)   p_kst 1.698901e-03   p_cons 4.548846e-01   p_joint 1.698901e-03

Outputting figure to mutsig2_images.part000000000164/SOX3.2_1345_910000_0.0016989_0.45488_0.0016989.png
                gene_name: SOX3
               theta_stop: 0.100 
                    nperm: 910000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0018 

Current progress: 94 percent done.
SP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
Cons ci ratio: 1.249691e-02	ci left: 9.019602e-01	ci right 9.134010e-01	k: 9078	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
SP2   10000 perm   2 sec   (6374 perm/sec)   p_kst 5.860000e-02   p_cons 9.078000e-01   p_joint 7.605000e-01

Joint ci ratio: 1.618454e-02	ci left: 7.396548e-01	ci right 7.517737e-01	k: 14915	n:20000
Cons ci ratio: 9.320223e-03	ci left: 8.941807e-01	ci right 9.026031e-01	k: 17969	n:20000
KS ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
SP2   20000 perm   4 sec   (5675 perm/sec)   p_kst 5.885000e-02   p_cons 8.984500e-01   p_joint 7.457500e-01

Joint ci ratio: 5.289636e-02	ci left: 1.506249e-01	ci right 1.588421e-01	k: 4641	n:30000
Cons ci ratio: 7.283622e-03	ci left: 9.028109e-01	ci right 9.094436e-01	k: 27185	n:30000
KS ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
SP2   30000 perm   6 sec   (5401 perm/sec)   p_kst 6.113333e-02   p_cons 9.061667e-01   p_joint 1.547000e-01

Outputting figure to mutsig2_images.part000000000164/SP2.2_1870_30000_0.061133_0.90617_0.1547.png
                gene_name: SP2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 96 percent done.
SP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 1.280039e-02	ci left: 8.977499e-01	ci right 9.094138e-01	k: 9037	n:10000
SP6   10000 perm   1 sec   (6668 perm/sec)   p_kst 9.037000e-01   p_cons 4.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP6.2_1135_10000_0.9037_0.4525_1.png
                gene_name: SP6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SPAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
Cons ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
KS ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
SPAG4   10000 perm   2 sec   (6468 perm/sec)   p_kst 3.896000e-01   p_cons 5.111000e-01   p_joint 5.220000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG4.2_1362_10000_0.3896_0.5111_0.522.png
                gene_name: SPAG4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000164
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 164 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 4422572: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000165> was used as the working directory.
Started at Wed Oct 24 18:08:44 2012
Results reported at Wed Oct 24 18:32:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000165.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000165.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 165  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000165.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1461.54 sec.
    Max Memory :      5279 MB
    Max Swap   :      7688 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
165
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 165
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 165: processing genes 14838 - 14928
Calculating significance of each gene.
Using projection method.
14838	SPAG7	3.194997e-01
14839	SPAG8	9.483077e-01
14840	SPAG9	9.424935e-01
14841	SPAM1	5.740219e-01
14842	SPANXC	1
14843	SPANXD	1
14844	SPANXE	5.193964e-01
14845	SPANXN1	6.236706e-02
14846	SPANXN2	4.124937e-06
In gene SPANXN3 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 434     n = 1	mu =   7.03e-07
14847	SPANXN3	1.802711e-02
14848	SPANXN4	2.154036e-04
14849	SPANXN5	6.167842e-02
14850	SPARC	1
14851	SPARCL1	6.867550e-01
14852	SPAST	9.041348e-01
14853	SPATA1	1
14854	SPATA12	1
14855	SPATA13	9.678941e-01
14856	SPATA16	3.674563e-01
14857	SPATA17	3.990303e-01
14858	SPATA18	1.288103e-01
14859	SPATA19	2.672624e-01
14860	SPATA2	1
14861	SPATA20	9.739222e-01
14862	SPATA21	9.174527e-01
14863	SPATA22	1.875326e-01
14864	SPATA2L	1
14865	SPATA4	5.938269e-01
14866	SPATA5	2.599688e-01
14867	SPATA5L1	1
14868	SPATA6	3.176787e-02
14869	SPATA7	5.551036e-01
14870	SPATA8	2.011089e-01
14871	SPATA9	6.227462e-02
14872	SPATC1	2.070293e-01
14873	SPATS1	1
14874	SPATS2	1
14875	SPATS2L	1
14876	SPC24	1
14877	SPC25	1.107718e-01
14878	SPCS1	3.174993e-01
14879	SPCS2	1
14880	SPCS3	5.133356e-01
14881	SPDEF	8.543430e-01
14882	SPDYA	1
14883	SPDYC	7.532739e-01
14884	SPDYE1	1
14885	SPDYE3	6.728673e-01
14886	SPDYE4	1
14887	SPDYE5	3.408015e-01
14888	SPDYE6	7.349321e-01
14889	SPEF1	1
14890	SPEF2	1.355929e-01
14891	SPEG	1
14892	SPEM1	4.810221e-01
14893	SPEN	1.000000e+00
14894	SPERT	8.573212e-01
14895	SPESP1	1.254491e-01
14896	SPG11	9.967088e-01
14897	SPG20	6.077764e-01
14898	SPG21	8.342823e-01
14899	SPG7	1
14900	SPHAR	1
14901	SPHK1	1
14902	SPHK2	8.469756e-01
14903	SPHKAP	9.987873e-01
14904	SPI1	1
14905	SPIB	5.968891e-01
14906	SPIC	2.505542e-01
14907	SPIN1	1
14908	SPIN2A	1
14909	SPIN2B	1
14910	SPIN3	7.930985e-02
14911	SPIN4	2.889128e-01
14912	SPINK1	1
14913	SPINK13	9.220990e-02
14914	SPINK14	2.119224e-01
14915	SPINK2	1
14916	SPINK4	3.672120e-01
14917	SPINK5	8.886309e-01
14918	SPINK6	1
14919	SPINK7	2.923044e-01
14920	SPINK8	1
14921	SPINK9	1
14922	SPINLW1	1
14923	SPINT1	1
14924	SPINT2	1
14925	SPINT4	4.449458e-01
14926	SPIRE1	5.437380e-01
14927	SPIRE2	8.566354e-01
14928	SPN	4.200753e-01
Done

Running MutSig 2:
Scatter job 165: processing genes 14838 - 14928
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
SPEF2   10000 perm   3 sec   (3285 perm/sec)   p_kst 5.879000e-01   p_cons 2.000000e-02   p_joint 4.200000e-02

Joint ci ratio: 1.231716e-01	ci left: 4.522388e-02	ci right 5.120834e-02	k: 963	n:20000
Cons ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
KS ci ratio: 2.334972e-02	ci left: 5.780342e-01	ci right 5.917411e-01	k: 11698	n:20000
SPEF2   20000 perm   8 sec   (2385 perm/sec)   p_kst 5.849000e-01   p_cons 1.855000e-02   p_joint 4.815000e-02

Joint ci ratio: 6.993391e-02	ci left: 9.147502e-02	ci right 9.813702e-02	k: 2843	n:30000
Cons ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
KS ci ratio: 1.776158e-02	ci left: 6.133096e-01	ci right 6.243341e-01	k: 18565	n:30000
SPEF2   30000 perm   12 sec   (2525 perm/sec)   p_kst 6.188333e-01   p_cons 1.943333e-02   p_joint 9.476667e-02

Joint ci ratio: 5.799722e-02	ci left: 9.951942e-02	ci right 1.054884e-01	k: 4099	n:40000
Cons ci ratio: 1.382602e-01	ci left: 1.833645e-02	ci right 2.108390e-02	k: 787	n:40000
KS ci ratio: 1.537667e-02	ci left: 6.142199e-01	ci right 6.237628e-01	k: 24760	n:40000
SPEF2   40000 perm   15 sec   (2590 perm/sec)   p_kst 6.190000e-01   p_cons 1.967500e-02   p_joint 1.024750e-01

Joint ci ratio: 5.494911e-02	ci left: 8.983589e-02	ci right 9.493155e-02	k: 4618	n:50000
Cons ci ratio: 1.234086e-01	ci left: 1.855805e-02	ci right 2.101815e-02	k: 988	n:50000
KS ci ratio: 1.376038e-02	ci left: 6.144860e-01	ci right 6.230202e-01	k: 30938	n:50000
SPEF2   50000 perm   19 sec   (2619 perm/sec)   p_kst 6.187600e-01   p_cons 1.976000e-02   p_joint 9.236000e-02

Joint ci ratio: 5.781466e-02	ci left: 6.910545e-02	ci right 7.323614e-02	k: 4269	n:60000
Cons ci ratio: 1.192182e-01	ci left: 1.664380e-02	ci right 1.876989e-02	k: 1061	n:60000
KS ci ratio: 1.259595e-02	ci left: 6.135639e-01	ci right 6.213580e-01	k: 37048	n:60000
SPEF2   60000 perm   23 sec   (2632 perm/sec)   p_kst 6.174667e-01   p_cons 1.768333e-02   p_joint 7.115000e-02

Joint ci ratio: 5.231311e-02	ci left: 7.231127e-02	ci right 7.620982e-02	k: 5197	n:70000
Cons ci ratio: 1.108768e-01	ci left: 1.656932e-02	ci right 1.852811e-02	k: 1227	n:70000
KS ci ratio: 1.166502e-02	ci left: 6.137161e-01	ci right 6.209314e-01	k: 43213	n:70000
SPEF2   70000 perm   27 sec   (2633 perm/sec)   p_kst 6.173286e-01   p_cons 1.752857e-02   p_joint 7.424286e-02

Joint ci ratio: 4.743122e-02	ci left: 7.679368e-02	ci right 8.053694e-02	k: 6292	n:80000
Cons ci ratio: 1.068355e-01	ci left: 1.566509e-02	ci right 1.744522e-02	k: 1323	n:80000
KS ci ratio: 1.087856e-02	ci left: 6.153864e-01	ci right 6.221300e-01	k: 49501	n:80000
SPEF2   80000 perm   30 sec   (2626 perm/sec)   p_kst 6.187625e-01   p_cons 1.653750e-02   p_joint 7.865000e-02

Joint ci ratio: 4.760691e-02	ci left: 6.838535e-02	ci right 7.173132e-02	k: 6304	n:90000
Cons ci ratio: 1.011580e-01	ci left: 1.558029e-02	ci right 1.725109e-02	k: 1476	n:90000
KS ci ratio: 1.025536e-02	ci left: 6.156287e-01	ci right 6.219858e-01	k: 55693	n:90000
SPEF2   90000 perm   34 sec   (2615 perm/sec)   p_kst 6.188111e-01   p_cons 1.640000e-02   p_joint 7.004444e-02

Joint ci ratio: 4.513465e-02	ci left: 6.855474e-02	ci right 7.173025e-02	k: 7013	n:100000
Cons ci ratio: 9.711988e-02	ci left: 1.525089e-02	ci right 1.681736e-02	k: 1602	n:100000
KS ci ratio: 9.717581e-03	ci left: 6.163522e-01	ci right 6.223809e-01	k: 61937	n:100000
SPEF2   100000 perm   38 sec   (2601 perm/sec)   p_kst 6.193700e-01   p_cons 1.602000e-02   p_joint 7.013000e-02

Outputting figure to mutsig2_images.part000000000165/SPEF2.37_5638_100000_0.61937_0.01602_0.07013.png
                gene_name: SPEF2
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.072 

Current progress: 2 percent done.
SPEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
SPEG   10000 perm   3 sec   (2922 perm/sec)   p_kst 4.000000e-02   p_cons 1.700000e-03   p_joint 1.360000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
KS ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
SPEG   20000 perm   7 sec   (2734 perm/sec)   p_kst 3.895000e-02   p_cons 2.200000e-03   p_joint 6.750000e-03

Joint ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
Cons ci ratio: 4.856811e-01	ci left: 1.643302e-03	ci right 2.723414e-03	k: 64	n:30000
KS ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
SPEG   30000 perm   11 sec   (2656 perm/sec)   p_kst 3.990000e-02   p_cons 2.133333e-03   p_joint 5.100000e-03

Joint ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
Cons ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
KS ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
SPEG   40000 perm   15 sec   (2606 perm/sec)   p_kst 3.892500e-02   p_cons 1.875000e-03   p_joint 2.575000e-03

Joint ci ratio: 2.070166e-01	ci left: 6.382787e-03	ci right 7.875297e-03	k: 355	n:50000
Cons ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
KS ci ratio: 8.711450e-02	ci left: 3.722200e-02	ci right 4.063180e-02	k: 1945	n:50000
SPEG   50000 perm   19 sec   (2568 perm/sec)   p_kst 3.890000e-02   p_cons 1.840000e-03   p_joint 7.100000e-03

Joint ci ratio: 1.938854e-01	ci left: 6.110446e-03	ci right 7.437938e-03	k: 405	n:60000
Cons ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
KS ci ratio: 7.963447e-02	ci left: 3.726877e-02	ci right 4.037604e-02	k: 2328	n:60000
SPEG   60000 perm   24 sec   (2533 perm/sec)   p_kst 3.880000e-02   p_cons 1.833333e-03   p_joint 6.750000e-03

Joint ci ratio: 2.027003e-01	ci left: 4.775570e-03	ci right 5.866054e-03	k: 371	n:70000
Cons ci ratio: 3.333611e-01	ci left: 1.643397e-03	ci right 2.313250e-03	k: 137	n:70000
KS ci ratio: 7.398497e-02	ci left: 3.712882e-02	ci right 3.999531e-02	k: 2698	n:70000
SPEG   70000 perm   28 sec   (2497 perm/sec)   p_kst 3.854286e-02   p_cons 1.957143e-03   p_joint 5.300000e-03

Joint ci ratio: 2.278086e-01	ci left: 3.267529e-03	ci right 4.119088e-03	k: 294	n:80000
Cons ci ratio: 3.030200e-01	ci left: 1.771604e-03	ci right 2.415360e-03	k: 166	n:80000
KS ci ratio: 6.943610e-02	ci left: 3.698061e-02	ci right 3.965301e-02	k: 3064	n:80000
SPEG   80000 perm   32 sec   (2468 perm/sec)   p_kst 3.830000e-02   p_cons 2.075000e-03   p_joint 3.675000e-03

Joint ci ratio: 2.282441e-01	ci left: 2.893928e-03	ci right 3.649760e-03	k: 293	n:90000
Cons ci ratio: 2.796934e-01	ci left: 1.873483e-03	ci right 2.492638e-03	k: 195	n:90000
KS ci ratio: 6.541695e-02	ci left: 3.711017e-02	ci right 3.963080e-02	k: 3452	n:90000
SPEG   90000 perm   37 sec   (2439 perm/sec)   p_kst 3.835556e-02   p_cons 2.166667e-03   p_joint 3.255556e-03

Joint ci ratio: 2.314616e-01	ci left: 2.529085e-03	ci right 3.200266e-03	k: 285	n:100000
Cons ci ratio: 2.616212e-01	ci left: 1.947165e-03	ci right 2.542297e-03	k: 223	n:100000
KS ci ratio: 6.204039e-02	ci left: 3.719770e-02	ci right 3.958916e-02	k: 3838	n:100000
SPEG   100000 perm   41 sec   (2417 perm/sec)   p_kst 3.838000e-02   p_cons 2.230000e-03   p_joint 2.850000e-03

Joint ci ratio: 2.331321e-01	ci left: 2.264884e-03	ci right 2.870909e-03	k: 281	n:110000
Cons ci ratio: 2.506727e-01	ci left: 1.940299e-03	ci right 2.504643e-03	k: 243	n:110000
KS ci ratio: 5.917435e-02	ci left: 3.722726e-02	ci right 3.950625e-02	k: 4219	n:110000
SPEG   110000 perm   46 sec   (2398 perm/sec)   p_kst 3.835455e-02   p_cons 2.209091e-03   p_joint 2.554545e-03

Joint ci ratio: 2.361129e-01	ci left: 2.021208e-03	ci right 2.569955e-03	k: 274	n:120000
Cons ci ratio: 2.405367e-01	ci left: 1.942841e-03	ci right 2.481669e-03	k: 264	n:120000
KS ci ratio: 5.678119e-02	ci left: 3.711428e-02	ci right 3.929144e-02	k: 4583	n:120000
SPEG   120000 perm   50 sec   (2382 perm/sec)   p_kst 3.819167e-02   p_cons 2.200000e-03   p_joint 2.283333e-03

Joint ci ratio: 2.275850e-01	ci left: 2.017888e-03	ci right 2.543170e-03	k: 295	n:130000
Cons ci ratio: 2.268182e-01	ci left: 2.032399e-03	ci right 2.559426e-03	k: 297	n:130000
KS ci ratio: 5.466818e-02	ci left: 3.700509e-02	ci right 3.909250e-02	k: 4945	n:130000
SPEG   130000 perm   55 sec   (2364 perm/sec)   p_kst 3.803846e-02   p_cons 2.284615e-03   p_joint 2.269231e-03

Joint ci ratio: 1.581093e-01	ci left: 4.025718e-03	ci right 4.723626e-03	k: 611	n:140000
Cons ci ratio: 2.168550e-01	ci left: 2.076124e-03	ci right 2.587694e-03	k: 325	n:140000
KS ci ratio: 5.269224e-02	ci left: 3.702563e-02	ci right 3.903641e-02	k: 5323	n:140000
SPEG   140000 perm   60 sec   (2347 perm/sec)   p_kst 3.802143e-02   p_cons 2.321429e-03   p_joint 4.364286e-03

Joint ci ratio: 1.651922e-01	ci left: 3.430996e-03	ci right 4.055095e-03	k: 560	n:150000
Cons ci ratio: 2.123501e-01	ci left: 2.026027e-03	ci right 2.513531e-03	k: 339	n:150000
KS ci ratio: 5.101856e-02	ci left: 3.689975e-02	ci right 3.883816e-02	k: 5679	n:150000
SPEG   150000 perm   64 sec   (2329 perm/sec)   p_kst 3.786000e-02   p_cons 2.260000e-03   p_joint 3.733333e-03

Joint ci ratio: 1.665577e-01	ci left: 3.162607e-03	ci right 3.743116e-03	k: 551	n:160000
Cons ci ratio: 2.057968e-01	ci left: 2.029703e-03	ci right 2.501123e-03	k: 361	n:160000
KS ci ratio: 4.933789e-02	ci left: 3.701900e-02	ci right 3.889779e-02	k: 6072	n:160000
SPEG   160000 perm   69 sec   (2312 perm/sec)   p_kst 3.795000e-02   p_cons 2.256250e-03   p_joint 3.443750e-03

Joint ci ratio: 1.655250e-01	ci left: 3.016017e-03	ci right 3.565843e-03	k: 558	n:170000
Cons ci ratio: 1.987800e-01	ci left: 2.055508e-03	ci right 2.514671e-03	k: 387	n:170000
KS ci ratio: 4.787468e-02	ci left: 3.703211e-02	ci right 3.885428e-02	k: 6449	n:170000
SPEG   170000 perm   74 sec   (2291 perm/sec)   p_kst 3.793529e-02   p_cons 2.276471e-03   p_joint 3.282353e-03

Joint ci ratio: 1.675054e-01	ci left: 2.779219e-03	ci right 3.292549e-03	k: 545	n:180000
Cons ci ratio: 1.940868e-01	ci left: 2.041676e-03	ci right 2.485709e-03	k: 406	n:180000
KS ci ratio: 4.663743e-02	ci left: 3.688519e-02	ci right 3.865196e-02	k: 6797	n:180000
SPEG   180000 perm   79 sec   (2270 perm/sec)   p_kst 3.776111e-02   p_cons 2.255556e-03   p_joint 3.027778e-03

Joint ci ratio: 1.666033e-01	ci left: 2.663190e-03	ci right 3.152172e-03	k: 551	n:190000
Cons ci ratio: 1.897111e-01	ci left: 2.029414e-03	ci right 2.459683e-03	k: 425	n:190000
KS ci ratio: 4.527782e-02	ci left: 3.709266e-02	ci right 3.881621e-02	k: 7210	n:190000
SPEG   190000 perm   85 sec   (2245 perm/sec)   p_kst 3.794737e-02   p_cons 2.236842e-03   p_joint 2.900000e-03

Joint ci ratio: 1.713493e-01	ci left: 2.386343e-03	ci right 2.838265e-03	k: 521	n:200000
Cons ci ratio: 1.854098e-01	ci left: 2.023248e-03	ci right 2.441389e-03	k: 445	n:200000
KS ci ratio: 4.419958e-02	ci left: 3.700301e-02	ci right 3.868042e-02	k: 7567	n:200000
SPEG   200000 perm   90 sec   (2225 perm/sec)   p_kst 3.783500e-02   p_cons 2.225000e-03   p_joint 2.605000e-03

Joint ci ratio: 1.666265e-01	ci left: 2.409526e-03	ci right 2.852000e-03	k: 551	n:210000
Cons ci ratio: 1.800383e-01	ci left: 2.049596e-03	ci right 2.459575e-03	k: 472	n:210000
KS ci ratio: 4.313551e-02	ci left: 3.702132e-02	ci right 3.865814e-02	k: 7945	n:210000
SPEG   210000 perm   95 sec   (2206 perm/sec)   p_kst 3.783333e-02   p_cons 2.247619e-03   p_joint 2.623810e-03

Joint ci ratio: 1.697476e-01	ci left: 2.212900e-03	ci right 2.627656e-03	k: 531	n:220000
Cons ci ratio: 1.751080e-01	ci left: 2.073708e-03	ci right 2.475949e-03	k: 499	n:220000
KS ci ratio: 4.207389e-02	ci left: 3.715988e-02	ci right 3.876141e-02	k: 8350	n:220000
SPEG   220000 perm   101 sec   (2187 perm/sec)   p_kst 3.795455e-02   p_cons 2.268182e-03   p_joint 2.413636e-03

Joint ci ratio: 1.707242e-01	ci left: 2.091700e-03	ci right 2.486228e-03	k: 525	n:230000
Cons ci ratio: 1.723743e-01	ci left: 2.050085e-03	ci right 2.440889e-03	k: 515	n:230000
KS ci ratio: 4.117505e-02	ci left: 3.713187e-02	ci right 3.869719e-02	k: 8719	n:230000
SPEG   230000 perm   106 sec   (2167 perm/sec)   p_kst 3.790870e-02   p_cons 2.239130e-03   p_joint 2.282609e-03

Joint ci ratio: 1.669574e-01	ci left: 2.100321e-03	ci right 2.486856e-03	k: 549	n:240000
Cons ci ratio: 1.678777e-01	ci left: 2.076367e-03	ci right 2.460812e-03	k: 543	n:240000
KS ci ratio: 4.038228e-02	ci left: 3.701575e-02	ci right 3.854544e-02	k: 9066	n:240000
SPEG   240000 perm   112 sec   (2148 perm/sec)   p_kst 3.777500e-02   p_cons 2.262500e-03   p_joint 2.287500e-03

Joint ci ratio: 1.644374e-01	ci left: 2.081487e-03	ci right 2.458201e-03	k: 566	n:250000
Cons ci ratio: 1.645829e-01	ci left: 2.077651e-03	ci right 2.454037e-03	k: 565	n:250000
KS ci ratio: 3.960954e-02	ci left: 3.695277e-02	ci right 3.844997e-02	k: 9424	n:250000
SPEG   250000 perm   117 sec   (2129 perm/sec)   p_kst 3.769600e-02   p_cons 2.260000e-03   p_joint 2.264000e-03

Joint ci ratio: 1.342347e-01	ci left: 3.049725e-03	ci right 3.492232e-03	k: 849	n:260000
Cons ci ratio: 1.624469e-01	ci left: 2.053071e-03	ci right 2.419705e-03	k: 580	n:260000
KS ci ratio: 3.880540e-02	ci left: 3.703207e-02	ci right 3.850133e-02	k: 9818	n:260000
SPEG   260000 perm   123 sec   (2110 perm/sec)   p_kst 3.776154e-02   p_cons 2.230769e-03   p_joint 3.265385e-03

Joint ci ratio: 1.359378e-01	ci left: 2.861604e-03	ci right 3.282508e-03	k: 828	n:270000
Cons ci ratio: 1.593237e-01	ci left: 2.058787e-03	ci right 2.418697e-03	k: 603	n:270000
KS ci ratio: 3.811625e-02	ci left: 3.697733e-02	ci right 3.841780e-02	k: 10177	n:270000
SPEG   270000 perm   129 sec   (2092 perm/sec)   p_kst 3.769259e-02   p_cons 2.233333e-03   p_joint 3.066667e-03

Joint ci ratio: 1.365246e-01	ci left: 2.735244e-03	ci right 3.139439e-03	k: 821	n:280000
Cons ci ratio: 1.562492e-01	ci left: 2.067590e-03	ci right 2.421410e-03	k: 627	n:280000
KS ci ratio: 3.739255e-02	ci left: 3.706121e-02	ci right 3.847695e-02	k: 10574	n:280000
SPEG   280000 perm   135 sec   (2074 perm/sec)   p_kst 3.776429e-02   p_cons 2.239286e-03   p_joint 2.932143e-03

Joint ci ratio: 1.361996e-01	ci left: 2.654240e-03	ci right 3.045455e-03	k: 825	n:290000
Cons ci ratio: 1.526438e-01	ci left: 2.095747e-03	ci right 2.445353e-03	k: 657	n:290000
KS ci ratio: 3.676257e-02	ci left: 3.703360e-02	ci right 3.842394e-02	k: 10940	n:290000
SPEG   290000 perm   141 sec   (2057 perm/sec)   p_kst 3.772414e-02   p_cons 2.265517e-03   p_joint 2.844828e-03

Joint ci ratio: 1.350631e-01	ci left: 2.610844e-03	ci right 2.992194e-03	k: 839	n:300000
Cons ci ratio: 1.500439e-01	ci left: 2.099652e-03	ci right 2.443409e-03	k: 680	n:300000
KS ci ratio: 3.618169e-02	ci left: 3.697166e-02	ci right 3.833729e-02	k: 11295	n:300000
SPEG   300000 perm   147 sec   (2041 perm/sec)   p_kst 3.765000e-02   p_cons 2.266667e-03   p_joint 2.796667e-03

Joint ci ratio: 1.330206e-01	ci left: 2.607682e-03	ci right 2.982354e-03	k: 865	n:310000
Cons ci ratio: 1.481005e-01	ci left: 2.087819e-03	ci right 2.424820e-03	k: 698	n:310000
KS ci ratio: 3.560844e-02	ci left: 3.695227e-02	ci right 3.829511e-02	k: 11662	n:310000
SPEG   310000 perm   153 sec   (2026 perm/sec)   p_kst 3.761935e-02   p_cons 2.251613e-03   p_joint 2.790323e-03

Joint ci ratio: 1.357246e-01	ci left: 2.423497e-03	ci right 2.779356e-03	k: 831	n:320000
Cons ci ratio: 1.462308e-01	ci left: 2.076753e-03	ci right 2.407365e-03	k: 716	n:320000
KS ci ratio: 3.506161e-02	ci left: 3.693424e-02	ci right 3.825540e-02	k: 12029	n:320000
SPEG   320000 perm   159 sec   (2011 perm/sec)   p_kst 3.759063e-02   p_cons 2.237500e-03   p_joint 2.596875e-03

Joint ci ratio: 1.334964e-01	ci left: 2.432050e-03	ci right 2.782836e-03	k: 859	n:330000
Cons ci ratio: 1.435519e-01	ci left: 2.092674e-03	ci right 2.419195e-03	k: 743	n:330000
KS ci ratio: 3.455515e-02	ci left: 3.688440e-02	ci right 3.818434e-02	k: 12385	n:330000
SPEG   330000 perm   165 sec   (1996 perm/sec)   p_kst 3.753030e-02   p_cons 2.251515e-03   p_joint 2.603030e-03

Joint ci ratio: 1.325774e-01	ci left: 2.394635e-03	ci right 2.737460e-03	k: 871	n:340000
Cons ci ratio: 1.417540e-01	ci left: 2.085012e-03	ci right 2.405919e-03	k: 762	n:340000
KS ci ratio: 3.403673e-02	ci left: 3.690764e-02	ci right 3.818850e-02	k: 12765	n:340000
SPEG   340000 perm   172 sec   (1981 perm/sec)   p_kst 3.754412e-02   p_cons 2.241176e-03   p_joint 2.561765e-03

Joint ci ratio: 1.299925e-01	ci left: 2.422935e-03	ci right 2.762526e-03	k: 906	n:350000
Cons ci ratio: 1.393981e-01	ci left: 2.097114e-03	ci right 2.414074e-03	k: 788	n:350000
KS ci ratio: 3.353699e-02	ci left: 3.693818e-02	ci right 3.820092e-02	k: 13148	n:350000
SPEG   350000 perm   178 sec   (1966 perm/sec)   p_kst 3.756571e-02   p_cons 2.251429e-03   p_joint 2.588571e-03

Joint ci ratio: 1.314583e-01	ci left: 2.301883e-03	ci right 2.628430e-03	k: 886	n:360000
Cons ci ratio: 1.368198e-01	ci left: 2.119317e-03	ci right 2.433225e-03	k: 818	n:360000
KS ci ratio: 3.308531e-02	ci left: 3.690929e-02	ci right 3.815372e-02	k: 13510	n:360000
SPEG   360000 perm   185 sec   (1950 perm/sec)   p_kst 3.752778e-02   p_cons 2.272222e-03   p_joint 2.461111e-03

Joint ci ratio: 1.310928e-01	ci left: 2.252736e-03	ci right 2.571353e-03	k: 891	n:370000
Cons ci ratio: 1.351797e-01	ci left: 2.114253e-03	ci right 2.423355e-03	k: 838	n:370000
KS ci ratio: 3.266364e-02	ci left: 3.685526e-02	ci right 3.808173e-02	k: 13862	n:370000
SPEG   370000 perm   192 sec   (1931 perm/sec)   p_kst 3.746486e-02   p_cons 2.264865e-03   p_joint 2.408108e-03

Joint ci ratio: 1.337534e-01	ci left: 2.104389e-03	ci right 2.408544e-03	k: 856	n:380000
Cons ci ratio: 1.339101e-01	ci left: 2.099301e-03	ci right 2.403105e-03	k: 854	n:380000
KS ci ratio: 3.224238e-02	ci left: 3.683811e-02	ci right 3.804791e-02	k: 14227	n:380000
SPEG   380000 perm   198 sec   (1917 perm/sec)   p_kst 3.743947e-02   p_cons 2.247368e-03   p_joint 2.252632e-03

Joint ci ratio: 1.326756e-01	ci left: 2.085130e-03	ci right 2.383882e-03	k: 870	n:390000
Cons ci ratio: 1.163921e-01	ci left: 2.731165e-03	ci right 3.071159e-03	k: 1130	n:390000
KS ci ratio: 3.181549e-02	ci left: 3.687028e-02	ci right 3.806481e-02	k: 14611	n:390000
SPEG   390000 perm   205 sec   (1903 perm/sec)   p_kst 3.746410e-02   p_cons 2.897436e-03   p_joint 2.230769e-03

Joint ci ratio: 1.403116e-01	ci left: 1.810831e-03	ci right 2.086464e-03	k: 778	n:400000
Cons ci ratio: 1.144835e-01	ci left: 2.755145e-03	ci right 3.092120e-03	k: 1168	n:400000
KS ci ratio: 3.135627e-02	ci left: 3.701259e-02	ci right 3.819412e-02	k: 15040	n:400000
SPEG   400000 perm   212 sec   (1888 perm/sec)   p_kst 3.760000e-02   p_cons 2.920000e-03   p_joint 1.945000e-03

Joint ci ratio: 1.374286e-01	ci left: 1.844358e-03	ci right 2.118854e-03	k: 811	n:410000
Cons ci ratio: 1.124324e-01	ci left: 2.789851e-03	ci right 3.124552e-03	k: 1211	n:410000
KS ci ratio: 3.096112e-02	ci left: 3.704398e-02	ci right 3.821134e-02	k: 15426	n:410000
SPEG   410000 perm   219 sec   (1873 perm/sec)   p_kst 3.762439e-02   p_cons 2.953659e-03   p_joint 1.978049e-03

Joint ci ratio: 1.357667e-01	ci left: 1.846437e-03	ci right 2.117650e-03	k: 831	n:420000
Cons ci ratio: 1.113362e-01	ci left: 2.778969e-03	ci right 3.108900e-03	k: 1235	n:420000
KS ci ratio: 3.059863e-02	ci left: 3.703143e-02	ci right 3.818449e-02	k: 15794	n:420000
SPEG   420000 perm   226 sec   (1860 perm/sec)   p_kst 3.760476e-02   p_cons 2.940476e-03   p_joint 1.978571e-03

Joint ci ratio: 1.356882e-01	ci left: 1.805740e-03	ci right 2.070810e-03	k: 832	n:430000
Cons ci ratio: 1.099655e-01	ci left: 2.784440e-03	ci right 3.110687e-03	k: 1266	n:430000
KS ci ratio: 3.024664e-02	ci left: 3.702415e-02	ci right 3.816349e-02	k: 16164	n:430000
SPEG   430000 perm   233 sec   (1847 perm/sec)   p_kst 3.759070e-02   p_cons 2.944186e-03   p_joint 1.934884e-03

Joint ci ratio: 1.356096e-01	ci left: 1.766894e-03	ci right 2.026099e-03	k: 833	n:440000
Cons ci ratio: 1.085604e-01	ci left: 2.794108e-03	ci right 3.117038e-03	k: 1299	n:440000
KS ci ratio: 2.988587e-02	ci left: 3.706691e-02	ci right 3.819373e-02	k: 16556	n:440000
SPEG   440000 perm   240 sec   (1833 perm/sec)   p_kst 3.762727e-02   p_cons 2.952273e-03   p_joint 1.893182e-03

Joint ci ratio: 1.367674e-01	ci left: 1.697574e-03	ci right 1.948910e-03	k: 819	n:450000
Cons ci ratio: 1.068866e-01	ci left: 2.820675e-03	ci right 3.141333e-03	k: 1340	n:450000
KS ci ratio: 2.957399e-02	ci left: 3.701960e-02	ci right 3.813303e-02	k: 16908	n:450000
SPEG   450000 perm   247 sec   (1820 perm/sec)   p_kst 3.757333e-02   p_cons 2.977778e-03   p_joint 1.820000e-03

Joint ci ratio: 1.358603e-01	ci left: 1.683767e-03	ci right 1.931271e-03	k: 830	n:460000
Cons ci ratio: 1.056720e-01	ci left: 2.824956e-03	ci right 3.142225e-03	k: 1371	n:460000
KS ci ratio: 2.924089e-02	ci left: 3.704995e-02	ci right 3.815154e-02	k: 17295	n:460000
SPEG   460000 perm   255 sec   (1806 perm/sec)   p_kst 3.759783e-02   p_cons 2.980435e-03   p_joint 1.804348e-03

Joint ci ratio: 1.348907e-01	ci left: 1.672609e-03	ci right 1.916577e-03	k: 842	n:470000
Cons ci ratio: 1.043116e-01	ci left: 2.839436e-03	ci right 3.153974e-03	k: 1407	n:470000
KS ci ratio: 2.890351e-02	ci left: 3.711711e-02	ci right 3.820775e-02	k: 17700	n:470000
SPEG   470000 perm   262 sec   (1795 perm/sec)   p_kst 3.765957e-02   p_cons 2.993617e-03   p_joint 1.791489e-03

Joint ci ratio: 1.344149e-01	ci left: 1.649841e-03	ci right 1.889571e-03	k: 848	n:480000
Cons ci ratio: 1.033260e-01	ci left: 2.835071e-03	ci right 3.145977e-03	k: 1434	n:480000
KS ci ratio: 2.858986e-02	ci left: 3.715050e-02	ci right 3.823009e-02	k: 18090	n:480000
SPEG   480000 perm   269 sec   (1784 perm/sec)   p_kst 3.768750e-02   p_cons 2.987500e-03   p_joint 1.766667e-03

Joint ci ratio: 1.216595e-01	ci left: 1.985629e-03	ci right 2.244804e-03	k: 1035	n:490000
Cons ci ratio: 1.023326e-01	ci left: 2.832885e-03	ci right 3.140385e-03	k: 1462	n:490000
KS ci ratio: 2.831407e-02	ci left: 3.711165e-02	ci right 3.817954e-02	k: 18445	n:490000
SPEG   490000 perm   276 sec   (1773 perm/sec)   p_kst 3.764286e-02   p_cons 2.983673e-03   p_joint 2.112245e-03

Joint ci ratio: 1.211941e-01	ci left: 1.961429e-03	ci right 2.216396e-03	k: 1043	n:500000
Cons ci ratio: 1.011634e-01	ci left: 2.842498e-03	ci right 3.147307e-03	k: 1496	n:500000
KS ci ratio: 2.805386e-02	ci left: 3.705454e-02	ci right 3.811082e-02	k: 18790	n:500000
SPEG   500000 perm   284 sec   (1762 perm/sec)   p_kst 3.758000e-02   p_cons 2.992000e-03   p_joint 2.086000e-03

Joint ci ratio: 1.213715e-01	ci left: 1.917263e-03	ci right 2.166879e-03	k: 1040	n:510000
Cons ci ratio: 1.002306e-01	ci left: 2.840281e-03	ci right 3.141879e-03	k: 1524	n:510000
KS ci ratio: 2.777356e-02	ci left: 3.706983e-02	ci right 3.811582e-02	k: 19171	n:510000
SPEG   510000 perm   291 sec   (1752 perm/sec)   p_kst 3.759020e-02   p_cons 2.988235e-03   p_joint 2.039216e-03

Joint ci ratio: 1.206789e-01	ci left: 1.902770e-03	ci right 2.148985e-03	k: 1052	n:520000
Cons ci ratio: 9.938735e-02	ci left: 2.834412e-03	ci right 3.132707e-03	k: 1550	n:520000
KS ci ratio: 2.749127e-02	ci left: 3.711133e-02	ci right 3.814768e-02	k: 19566	n:520000
SPEG   520000 perm   299 sec   (1742 perm/sec)   p_kst 3.762692e-02   p_cons 2.980769e-03   p_joint 2.023077e-03

Joint ci ratio: 1.227423e-01	ci left: 1.802836e-03	ci right 2.040398e-03	k: 1017	n:530000
Cons ci ratio: 9.843986e-02	ci left: 2.836136e-03	ci right 3.131602e-03	k: 1580	n:530000
KS ci ratio: 2.724012e-02	ci left: 3.709133e-02	ci right 3.811751e-02	k: 19929	n:530000
SPEG   530000 perm   306 sec   (1731 perm/sec)   p_kst 3.760189e-02   p_cons 2.981132e-03   p_joint 1.918868e-03

Joint ci ratio: 1.217304e-01	ci left: 1.799969e-03	ci right 2.035056e-03	k: 1034	n:540000
Cons ci ratio: 9.767111e-02	ci left: 2.828776e-03	ci right 3.121042e-03	k: 1605	n:540000
KS ci ratio: 2.697157e-02	ci left: 3.713650e-02	ci right 3.815365e-02	k: 20327	n:540000
SPEG   540000 perm   314 sec   (1720 perm/sec)   p_kst 3.764259e-02   p_cons 2.972222e-03   p_joint 1.914815e-03

Joint ci ratio: 1.076423e-01	ci left: 2.275941e-03	ci right 2.536617e-03	k: 1322	n:550000
Cons ci ratio: 9.644676e-02	ci left: 2.850081e-03	ci right 3.140648e-03	k: 1646	n:550000
KS ci ratio: 2.670411e-02	ci left: 3.719815e-02	ci right 3.820673e-02	k: 20735	n:550000
SPEG   550000 perm   322 sec   (1710 perm/sec)   p_kst 3.770000e-02   p_cons 2.992727e-03   p_joint 2.403636e-03

Joint ci ratio: 1.080547e-01	ci left: 2.217921e-03	ci right 2.472986e-03	k: 1312	n:560000
Cons ci ratio: 9.555162e-02	ci left: 2.853215e-03	ci right 3.141251e-03	k: 1677	n:560000
KS ci ratio: 2.648809e-02	ci left: 3.713876e-02	ci right 3.813746e-02	k: 21076	n:560000
SPEG   560000 perm   330 sec   (1699 perm/sec)   p_kst 3.763571e-02   p_cons 2.994643e-03   p_joint 2.342857e-03

Joint ci ratio: 1.083052e-01	ci left: 2.168765e-03	ci right 2.418793e-03	k: 1306	n:570000
Cons ci ratio: 9.498806e-02	ci left: 2.837409e-03	ci right 3.122066e-03	k: 1697	n:570000
KS ci ratio: 2.626513e-02	ci left: 3.711461e-02	ci right 3.810413e-02	k: 21436	n:570000
SPEG   570000 perm   337 sec   (1689 perm/sec)   p_kst 3.760702e-02   p_cons 2.977193e-03   p_joint 2.291228e-03

Joint ci ratio: 1.078534e-01	ci left: 2.149824e-03	ci right 2.396569e-03	k: 1317	n:580000
Cons ci ratio: 9.424197e-02	ci left: 2.833938e-03	ci right 3.115890e-03	k: 1724	n:580000
KS ci ratio: 2.600991e-02	ci left: 3.719584e-02	ci right 3.817775e-02	k: 21857	n:580000
SPEG   580000 perm   345 sec   (1679 perm/sec)   p_kst 3.768448e-02   p_cons 2.972414e-03   p_joint 2.270690e-03

Joint ci ratio: 1.083926e-01	ci left: 2.091945e-03	ci right 2.333323e-03	k: 1304	n:590000
Cons ci ratio: 9.345970e-02	ci left: 2.833904e-03	ci right 3.113385e-03	k: 1753	n:590000
KS ci ratio: 2.578123e-02	ci left: 3.722046e-02	ci right 3.819425e-02	k: 22246	n:590000
SPEG   590000 perm   354 sec   (1669 perm/sec)   p_kst 3.770508e-02   p_cons 2.971186e-03   p_joint 2.210169e-03

Joint ci ratio: 1.083946e-01	ci left: 2.057078e-03	ci right 2.294437e-03	k: 1304	n:600000
Cons ci ratio: 9.280106e-02	ci left: 2.827368e-03	ci right 3.104132e-03	k: 1778	n:600000
KS ci ratio: 2.556670e-02	ci left: 3.722111e-02	ci right 3.818669e-02	k: 22621	n:600000
SPEG   600000 perm   362 sec   (1659 perm/sec)   p_kst 3.770167e-02   p_cons 2.963333e-03   p_joint 2.173333e-03

Joint ci ratio: 1.074517e-01	ci left: 2.060042e-03	ci right 2.295545e-03	k: 1327	n:610000
Cons ci ratio: 9.210495e-02	ci left: 2.824256e-03	ci right 3.098531e-03	k: 1805	n:610000
KS ci ratio: 2.536260e-02	ci left: 3.720710e-02	ci right 3.816451e-02	k: 22987	n:610000
SPEG   610000 perm   370 sec   (1648 perm/sec)   p_kst 3.768361e-02   p_cons 2.959016e-03   p_joint 2.175410e-03

Joint ci ratio: 1.118435e-01	ci left: 1.866799e-03	ci right 2.089508e-03	k: 1225	n:620000
Cons ci ratio: 9.139928e-02	ci left: 2.822829e-03	ci right 3.094752e-03	k: 1833	n:620000
KS ci ratio: 2.514485e-02	ci left: 3.724648e-02	ci right 3.819655e-02	k: 23386	n:620000
SPEG   620000 perm   379 sec   (1638 perm/sec)   p_kst 3.771935e-02   p_cons 2.956452e-03   p_joint 1.975806e-03

Joint ci ratio: 1.109422e-01	ci left: 1.868029e-03	ci right 2.088972e-03	k: 1245	n:630000
Cons ci ratio: 9.078296e-02	ci left: 2.816800e-03	ci right 3.086215e-03	k: 1858	n:630000
KS ci ratio: 2.493969e-02	ci left: 3.726414e-02	ci right 3.820679e-02	k: 23772	n:630000
SPEG   630000 perm   387 sec   (1628 perm/sec)   p_kst 3.773333e-02   p_cons 2.949206e-03   p_joint 1.976190e-03

Joint ci ratio: 1.114379e-01	ci left: 1.822129e-03	ci right 2.038669e-03	k: 1234	n:640000
Cons ci ratio: 9.015494e-02	ci left: 2.812493e-03	ci right 3.079537e-03	k: 1884	n:640000
KS ci ratio: 2.474800e-02	ci left: 3.725641e-02	ci right 3.819153e-02	k: 24142	n:640000
SPEG   640000 perm   395 sec   (1619 perm/sec)   p_kst 3.772188e-02   p_cons 2.943750e-03   p_joint 1.928125e-03

Joint ci ratio: 1.101513e-01	ci left: 1.837476e-03	ci right 2.053155e-03	k: 1263	n:650000
Cons ci ratio: 8.949283e-02	ci left: 2.811333e-03	ci right 3.076204e-03	k: 1912	n:650000
KS ci ratio: 2.454453e-02	ci left: 3.729637e-02	ci right 3.822468e-02	k: 24543	n:650000
SPEG   650000 perm   404 sec   (1610 perm/sec)   p_kst 3.775846e-02   p_cons 2.941538e-03   p_joint 1.943077e-03

Joint ci ratio: 1.092474e-01	ci left: 1.840581e-03	ci right 2.054737e-03	k: 1284	n:660000
Cons ci ratio: 8.875341e-02	ci left: 2.816142e-03	ci right 3.079160e-03	k: 1944	n:660000
KS ci ratio: 2.436225e-02	ci left: 3.728694e-02	ci right 3.820803e-02	k: 24912	n:660000
SPEG   660000 perm   412 sec   (1600 perm/sec)   p_kst 3.774545e-02   p_cons 2.945455e-03   p_joint 1.945455e-03

Joint ci ratio: 1.085738e-01	ci left: 1.836340e-03	ci right 2.048601e-03	k: 1300	n:670000
Cons ci ratio: 8.825618e-02	ci left: 2.806218e-03	ci right 3.066766e-03	k: 1966	n:670000
KS ci ratio: 2.419192e-02	ci left: 3.725408e-02	ci right 3.816783e-02	k: 25265	n:670000
SPEG   670000 perm   421 sec   (1592 perm/sec)   p_kst 3.770896e-02   p_cons 2.934328e-03   p_joint 1.940299e-03

Joint ci ratio: 1.088271e-01	ci left: 1.800749e-03	ci right 2.009413e-03	k: 1294	n:680000
Cons ci ratio: 8.778934e-02	ci left: 2.795152e-03	ci right 3.053229e-03	k: 1987	n:680000
KS ci ratio: 2.402804e-02	ci left: 3.721344e-02	ci right 3.811992e-02	k: 25612	n:680000
SPEG   680000 perm   430 sec   (1582 perm/sec)   p_kst 3.766471e-02   p_cons 2.922059e-03   p_joint 1.902941e-03

Joint ci ratio: 1.081199e-01	ci left: 1.798620e-03	ci right 2.005597e-03	k: 1311	n:690000
Cons ci ratio: 8.715596e-02	ci left: 2.795752e-03	ci right 3.051927e-03	k: 2016	n:690000
KS ci ratio: 2.384646e-02	ci left: 3.723739e-02	ci right 3.813751e-02	k: 26003	n:690000
SPEG   690000 perm   439 sec   (1572 perm/sec)   p_kst 3.768551e-02   p_cons 2.921739e-03   p_joint 1.900000e-03

Joint ci ratio: 1.103340e-01	ci left: 1.700665e-03	ci right 1.900637e-03	k: 1259	n:700000
Cons ci ratio: 8.640912e-02	ci left: 2.804729e-03	ci right 3.059413e-03	k: 2051	n:700000
KS ci ratio: 2.366706e-02	ci left: 3.726637e-02	ci right 3.816032e-02	k: 26398	n:700000
SPEG   700000 perm   448 sec   (1563 perm/sec)   p_kst 3.771143e-02   p_cons 2.930000e-03   p_joint 1.798571e-03

Joint ci ratio: 1.177795e-01	ci left: 1.465981e-03	ci right 1.650800e-03	k: 1105	n:710000
Cons ci ratio: 8.574298e-02	ci left: 2.809326e-03	ci right 3.062362e-03	k: 2083	n:710000
KS ci ratio: 2.350306e-02	ci left: 3.725954e-02	ci right 3.814705e-02	k: 26768	n:710000
SPEG   710000 perm   457 sec   (1553 perm/sec)   p_kst 3.770141e-02   p_cons 2.933803e-03   p_joint 1.556338e-03

Joint ci ratio: 1.173037e-01	ci left: 1.457752e-03	ci right 1.640740e-03	k: 1114	n:720000
Cons ci ratio: 8.501147e-02	ci left: 2.819240e-03	ci right 3.070896e-03	k: 2119	n:720000
KS ci ratio: 2.332009e-02	ci left: 3.732198e-02	ci right 3.820397e-02	k: 27188	n:720000
SPEG   720000 perm   467 sec   (1543 perm/sec)   p_kst 3.776111e-02   p_cons 2.943056e-03   p_joint 1.547222e-03

Joint ci ratio: 1.166778e-01	ci left: 1.453740e-03	ci right 1.635184e-03	k: 1126	n:730000
Cons ci ratio: 8.437690e-02	ci left: 2.823528e-03	ci right 3.073593e-03	k: 2151	n:730000
KS ci ratio: 2.315485e-02	ci left: 3.734050e-02	ci right 3.821659e-02	k: 27577	n:730000
SPEG   730000 perm   476 sec   (1533 perm/sec)   p_kst 3.777671e-02   p_cons 2.946575e-03   p_joint 1.542466e-03

Joint ci ratio: 1.160618e-01	ci left: 1.449839e-03	ci right 1.629775e-03	k: 1138	n:740000
Cons ci ratio: 8.402687e-02	ci left: 2.809184e-03	ci right 3.056895e-03	k: 2169	n:740000
KS ci ratio: 2.300462e-02	ci left: 3.732227e-02	ci right 3.819217e-02	k: 27939	n:740000
SPEG   740000 perm   485 sec   (1525 perm/sec)   p_kst 3.775541e-02   p_cons 2.931081e-03   p_joint 1.537838e-03

Joint ci ratio: 1.155058e-01	ci left: 1.444749e-03	ci right 1.623136e-03	k: 1149	n:750000
Cons ci ratio: 8.343294e-02	ci left: 2.812196e-03	ci right 3.058335e-03	k: 2200	n:750000
KS ci ratio: 2.285727e-02	ci left: 3.730453e-02	ci right 3.816838e-02	k: 28301	n:750000
SPEG   750000 perm   495 sec   (1516 perm/sec)   p_kst 3.773467e-02   p_cons 2.933333e-03   p_joint 1.532000e-03

Joint ci ratio: 1.144160e-01	ci left: 1.453855e-03	ci right 1.631558e-03	k: 1171	n:760000
Cons ci ratio: 8.294466e-02	ci left: 2.808692e-03	ci right 3.053016e-03	k: 2226	n:760000
KS ci ratio: 2.271642e-02	ci left: 3.727550e-02	ci right 3.813329e-02	k: 28654	n:760000
SPEG   760000 perm   504 sec   (1507 perm/sec)   p_kst 3.770263e-02   p_cons 2.928947e-03   p_joint 1.540789e-03

Joint ci ratio: 1.139314e-01	ci left: 1.447590e-03	ci right 1.623727e-03	k: 1181	n:770000
Cons ci ratio: 8.226369e-02	ci left: 2.819275e-03	ci right 3.062410e-03	k: 2263	n:770000
KS ci ratio: 2.258017e-02	ci left: 3.724079e-02	ci right 3.809257e-02	k: 29002	n:770000
SPEG   770000 perm   514 sec   (1499 perm/sec)   p_kst 3.766494e-02   p_cons 2.938961e-03   p_joint 1.533766e-03

Joint ci ratio: 1.132153e-01	ci left: 1.447715e-03	ci right 1.622687e-03	k: 1196	n:780000
Cons ci ratio: 8.188524e-02	ci left: 2.809501e-03	ci right 3.050624e-03	k: 2284	n:780000
KS ci ratio: 2.243363e-02	ci left: 3.724778e-02	ci right 3.809412e-02	k: 29382	n:780000
SPEG   780000 perm   523 sec   (1491 perm/sec)   p_kst 3.766923e-02   p_cons 2.928205e-03   p_joint 1.533333e-03

Joint ci ratio: 1.123271e-01	ci left: 1.452762e-03	ci right 1.626875e-03	k: 1215	n:790000
Cons ci ratio: 8.128250e-02	ci left: 2.816098e-03	ci right 3.055924e-03	k: 2318	n:790000
KS ci ratio: 2.228797e-02	ci left: 3.726091e-02	ci right 3.810198e-02	k: 29767	n:790000
SPEG   790000 perm   533 sec   (1483 perm/sec)   p_kst 3.767975e-02   p_cons 2.934177e-03   p_joint 1.537975e-03

Joint ci ratio: 1.110549e-01	ci left: 1.468626e-03	ci right 1.642516e-03	k: 1243	n:800000
Cons ci ratio: 8.088272e-02	ci left: 2.809063e-03	ci right 3.047059e-03	k: 2341	n:800000
KS ci ratio: 2.190059e-02	ci left: 3.808317e-02	ci right 3.892768e-02	k: 30803	n:800000
SPEG   800000 perm   542 sec   (1475 perm/sec)   p_kst 3.850375e-02   p_cons 2.926250e-03   p_joint 1.553750e-03

Joint ci ratio: 1.103475e-01	ci left: 1.469701e-03	ci right 1.642537e-03	k: 1259	n:810000
Cons ci ratio: 8.020019e-02	ci left: 2.822772e-03	ci right 3.059817e-03	k: 2381	n:810000
KS ci ratio: 2.175992e-02	ci left: 3.810291e-02	ci right 3.894236e-02	k: 31202	n:810000
SPEG   810000 perm   552 sec   (1467 perm/sec)   p_kst 3.852099e-02   p_cons 2.939506e-03   p_joint 1.554321e-03

Joint ci ratio: 1.095675e-01	ci left: 1.473125e-03	ci right 1.645061e-03	k: 1277	n:820000
Cons ci ratio: 7.956761e-02	ci left: 2.833765e-03	ci right 3.069768e-03	k: 2419	n:820000
KS ci ratio: 2.162691e-02	ci left: 3.810521e-02	ci right 3.893952e-02	k: 31587	n:820000
SPEG   820000 perm   562 sec   (1459 perm/sec)   p_kst 3.852073e-02   p_cons 2.950000e-03   p_joint 1.557317e-03

Joint ci ratio: 1.090993e-01	ci left: 1.468267e-03	ci right 1.638857e-03	k: 1288	n:830000
Cons ci ratio: 7.904659e-02	ci left: 2.837413e-03	ci right 3.072102e-03	k: 2451	n:830000
KS ci ratio: 2.149946e-02	ci left: 3.809668e-02	ci right 3.892582e-02	k: 31963	n:830000
SPEG   830000 perm   572 sec   (1451 perm/sec)   p_kst 3.850964e-02   p_cons 2.953012e-03   p_joint 1.551807e-03

Joint ci ratio: 9.818362e-02	ci left: 1.801032e-03	ci right 1.988144e-03	k: 1590	n:840000
Cons ci ratio: 7.855153e-02	ci left: 2.839812e-03	ci right 3.073161e-03	k: 2482	n:840000
KS ci ratio: 2.137045e-02	ci left: 3.810139e-02	ci right 3.892560e-02	k: 32350	n:840000
SPEG   840000 perm   582 sec   (1443 perm/sec)   p_kst 3.851190e-02   p_cons 2.954762e-03   p_joint 1.892857e-03

Outputting figure to mutsig2_images.part000000000165/SPEG.26_9980_840000_0.038512_0.0029548_0.0018929.png
                gene_name: SPEG
               theta_stop: 0.098 
                    nperm: 840000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.0030 
      ci_cons_bounds_left: 0.0028 
     ci_cons_bounds_right: 0.0031 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0020 

Current progress: 4 percent done.
SPHKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
Cons ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
KS ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
SPHKAP   10000 perm   2 sec   (4043 perm/sec)   p_kst 6.174000e-01   p_cons 4.104000e-01   p_joint 9.171000e-01

Outputting figure to mutsig2_images.part000000000165/SPHKAP.21_5151_10000_0.6174_0.4104_0.9171.png
                gene_name: SPHKAP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 7 percent done.
SPEN
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
KS ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
SPEN   10000 perm   3 sec   (3291 perm/sec)   p_kst 1.821000e-01   p_cons 6.761000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000165/SPEN.15_11055_10000_0.1821_0.6761_0.3964.png
                gene_name: SPEN
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 9 percent done.
SPAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
Cons ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
SPAM1   10000 perm   2 sec   (5605 perm/sec)   p_kst 4.636000e-01   p_cons 6.964000e-01   p_joint 6.299000e-01

Outputting figure to mutsig2_images.part000000000165/SPAM1.12_1597_10000_0.4636_0.6964_0.6299.png
                gene_name: SPAM1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 11 percent done.
SPATA18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
Cons ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
KS ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
SPATA18   10000 perm   2 sec   (4746 perm/sec)   p_kst 1.321000e-01   p_cons 2.765000e-01   p_joint 1.965000e-01

Joint ci ratio: 6.604713e-02	ci left: 1.447816e-01	ci right 1.547205e-01	k: 2994	n:20000
Cons ci ratio: 4.454226e-02	ci left: 2.728909e-01	ci right 2.853734e-01	k: 5582	n:20000
KS ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
SPATA18   20000 perm   5 sec   (4357 perm/sec)   p_kst 1.297500e-01   p_cons 2.791000e-01   p_joint 1.497000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA18.11_1669_20000_0.12975_0.2791_0.1497.png
                gene_name: SPATA18
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 13 percent done.
SPANXN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
SPANXN2   10000 perm   2 sec   (5557 perm/sec)   p_kst 5.372000e-01   p_cons 3.096000e-01   p_joint 7.084000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN2.9_551_10000_0.5372_0.3096_0.7084.png
                gene_name: SPANXN2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 15 percent done.
SPATA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
Cons ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
KS ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
SPATA16   10000 perm   2 sec   (5684 perm/sec)   p_kst 5.599000e-01   p_cons 7.289000e-01   p_joint 7.307000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA16.7_1750_10000_0.5599_0.7289_0.7307.png
                gene_name: SPATA16
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 17 percent done.
SPATA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.571600e-02	ci left: 6.900036e-01	ci right 7.080803e-01	k: 6991	n:10000
KS ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
SPATA5   10000 perm   2 sec   (5258 perm/sec)   p_kst 9.248000e-01   p_cons 6.991000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA5.7_2746_10000_0.9248_0.6991_1.png
                gene_name: SPATA5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
SPG11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
KS ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
SPG11   10000 perm   3 sec   (3921 perm/sec)   p_kst 6.059000e-01   p_cons 7.537000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPG11.7_7492_10000_0.6059_0.7537_1.png
                gene_name: SPG11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
SPAG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
SPAG9   10000 perm   2 sec   (4778 perm/sec)   p_kst 9.060000e-02   p_cons 3.888000e-01   p_joint 1.422000e-01

Joint ci ratio: 6.510390e-02	ci left: 1.484312e-01	ci right 1.584697e-01	k: 3068	n:20000
Cons ci ratio: 3.511110e-02	ci left: 3.771522e-01	ci right 3.906816e-01	k: 7678	n:20000
KS ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
SPAG9   20000 perm   5 sec   (4346 perm/sec)   p_kst 9.460000e-02   p_cons 3.839000e-01   p_joint 1.534000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG9.6_4086_20000_0.0946_0.3839_0.1534.png
                gene_name: SPAG9
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 24 percent done.
SPANXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
Cons ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
KS ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
SPANXN3   10000 perm   2 sec   (5983 perm/sec)   p_kst 4.044000e-01   p_cons 4.316000e-01   p_joint 5.318000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN3.6_434_10000_0.4044_0.4316_0.5318.png
                gene_name: SPANXN3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 26 percent done.
SPATA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
KS ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
SPATA6   10000 perm   2 sec   (5382 perm/sec)   p_kst 8.630000e-01   p_cons 5.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA6.6_1519_10000_0.863_0.5429_1.png
                gene_name: SPATA6
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
SPATC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
SPATC1   10000 perm   2 sec   (5701 perm/sec)   p_kst 1.959000e-01   p_cons 8.320000e-02   p_joint 1.597000e-01

Joint ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
Cons ci ratio: 9.326961e-02	ci left: 7.735273e-02	ci right 8.496956e-02	k: 1622	n:20000
KS ci ratio: 5.523804e-02	ci left: 1.955637e-01	ci right 2.067233e-01	k: 4022	n:20000
SPATC1   20000 perm   4 sec   (5138 perm/sec)   p_kst 2.011000e-01   p_cons 8.110000e-02   p_joint 8.550000e-02

Outputting figure to mutsig2_images.part000000000165/SPATC1.6_1796_20000_0.2011_0.0811_0.0855.png
                gene_name: SPATC1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 30 percent done.
SPARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
Cons ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
KS ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
SPARC   10000 perm   2 sec   (5952 perm/sec)   p_kst 3.089000e-01   p_cons 3.249000e-01   p_joint 4.024000e-01

Outputting figure to mutsig2_images.part000000000165/SPARC.5_948_10000_0.3089_0.3249_0.4024.png
                gene_name: SPARC
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
SPARCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
SPARCL1   10000 perm   2 sec   (5771 perm/sec)   p_kst 4.675000e-01   p_cons 2.896000e-01   p_joint 3.283000e-01

Outputting figure to mutsig2_images.part000000000165/SPARCL1.5_2035_10000_0.4675_0.2896_0.3283.png
                gene_name: SPARCL1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 35 percent done.
SPG20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SPG20   10000 perm   2 sec   (5869 perm/sec)   p_kst 1   p_cons 4.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPG20.5_2033_10000_1_0.4699_1.png
                gene_name: SPG20
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
SPIRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
Cons ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
SPIRE1   10000 perm   2 sec   (5849 perm/sec)   p_kst 4.740000e-02   p_cons 2.955000e-01   p_joint 1.040000e-01

Joint ci ratio: 1.126881e-01	ci left: 5.382647e-02	ci right 6.030306e-02	k: 1140	n:20000
Cons ci ratio: 4.265528e-02	ci left: 2.905231e-01	ci right 3.032360e-01	k: 5937	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
SPIRE1   20000 perm   4 sec   (5315 perm/sec)   p_kst 4.385000e-02   p_cons 2.968500e-01   p_joint 5.700000e-02

Joint ci ratio: 9.910257e-02	ci left: 4.710509e-02	ci right 5.204928e-02	k: 1486	n:30000
Cons ci ratio: 3.475855e-02	ci left: 2.925290e-01	ci right 3.029102e-01	k: 8931	n:30000
KS ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
SPIRE1   30000 perm   6 sec   (5062 perm/sec)   p_kst 4.303333e-02   p_cons 2.977000e-01   p_joint 4.953333e-02

Joint ci ratio: 7.683169e-02	ci left: 5.874768e-02	ci right 6.346628e-02	k: 2443	n:40000
Cons ci ratio: 3.019806e-02	ci left: 2.919022e-01	ci right 3.008773e-01	k: 11855	n:40000
KS ci ratio: 9.249214e-02	ci left: 4.098388e-02	ci right 4.498281e-02	k: 1718	n:40000
SPIRE1   40000 perm   8 sec   (4872 perm/sec)   p_kst 4.295000e-02   p_cons 2.963750e-01   p_joint 6.107500e-02

Outputting figure to mutsig2_images.part000000000165/SPIRE1.5_2339_40000_0.04295_0.29637_0.061075.png
                gene_name: SPIRE1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 39 percent done.
SPDYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
Cons ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
KS ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
SPDYC   10000 perm   2 sec   (6549 perm/sec)   p_kst 4.033000e-01   p_cons 8.456000e-01   p_joint 5.835000e-01

Outputting figure to mutsig2_images.part000000000165/SPDYC.4_909_10000_0.4033_0.8456_0.5835.png
                gene_name: SPDYC
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 41 percent done.
SPESP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.348406e-02	ci left: 5.683489e-01	ci right 5.878056e-01	k: 5781	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
SPESP1   10000 perm   2 sec   (6473 perm/sec)   p_kst 3.512000e-01   p_cons 8.281000e-01   p_joint 5.781000e-01

Outputting figure to mutsig2_images.part000000000165/SPESP1.4_1061_10000_0.3512_0.8281_0.5781.png
                gene_name: SPESP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 43 percent done.
SPG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
SPG7   10000 perm   2 sec   (5515 perm/sec)   p_kst 5.049000e-01   p_cons 5.055000e-01   p_joint 5.459000e-01

Outputting figure to mutsig2_images.part000000000165/SPG7.4_2606_10000_0.5049_0.5055_0.5459.png
                gene_name: SPG7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 46 percent done.
SPINK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
SPINK5   10000 perm   2 sec   (5091 perm/sec)   p_kst 1.698000e-01   p_cons 1.162000e-01   p_joint 1.155000e-01

Joint ci ratio: 7.098530e-02	ci left: 1.275838e-01	ci right 1.370234e-01	k: 2645	n:20000
Cons ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
KS ci ratio: 6.090124e-02	ci left: 1.663483e-01	ci right 1.768473e-01	k: 3431	n:20000
SPINK5   20000 perm   4 sec   (4608 perm/sec)   p_kst 1.715500e-01   p_cons 1.203500e-01   p_joint 1.322500e-01

Outputting figure to mutsig2_images.part000000000165/SPINK5.4_3433_20000_0.17155_0.12035_0.13225.png
                gene_name: SPINK5
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 48 percent done.
SPANXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
Cons ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
KS ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
SPANXN4   10000 perm   1 sec   (7241 perm/sec)   p_kst 8.053000e-01   p_cons 3.806000e-01   p_joint 9.019000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN4.3_308_10000_0.8053_0.3806_0.9019.png
                gene_name: SPANXN4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 50 percent done.
SPATA17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
Cons ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
KS ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
SPATA17   10000 perm   2 sec   (6091 perm/sec)   p_kst 5.003000e-01   p_cons 4.769000e-01   p_joint 7.740000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA17.3_1126_10000_0.5003_0.4769_0.774.png
                gene_name: SPATA17
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 52 percent done.
SPATA20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
Cons ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
KS ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
SPATA20   10000 perm   2 sec   (6296 perm/sec)   p_kst 1.244000e-01   p_cons 8.460000e-02   p_joint 5.740000e-02

Joint ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
Cons ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
KS ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
SPATA20   20000 perm   4 sec   (5553 perm/sec)   p_kst 1.241000e-01   p_cons 8.355000e-02   p_joint 6.560000e-02

Joint ci ratio: 9.093044e-02	ci left: 5.567479e-02	ci right 6.101114e-02	k: 1749	n:30000
Cons ci ratio: 7.491425e-02	ci left: 8.049168e-02	ci right 8.678923e-02	k: 2508	n:30000
KS ci ratio: 6.046945e-02	ci left: 1.191389e-01	ci right 1.266009e-01	k: 3685	n:30000
SPATA20   30000 perm   6 sec   (5265 perm/sec)   p_kst 1.228333e-01   p_cons 8.360000e-02   p_joint 5.830000e-02

Outputting figure to mutsig2_images.part000000000165/SPATA20.3_2477_30000_0.12283_0.0836_0.0583.png
                gene_name: SPATA20
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 54 percent done.
SPATA22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
SPATA22   10000 perm   2 sec   (6297 perm/sec)   p_kst 9.123000e-01   p_cons 4.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA22.3_1124_10000_0.9123_0.4533_1.png
                gene_name: SPATA22
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
SPATA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
SPATA7   10000 perm   2 sec   (6009 perm/sec)   p_kst 9.368000e-01   p_cons 7.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA7.3_1848_10000_0.9368_0.7633_1.png
                gene_name: SPATA7
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
SPATA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
Cons ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
KS ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
SPATA9   10000 perm   1 sec   (6716 perm/sec)   p_kst 7.700000e-02   p_cons 5.606000e-01   p_joint 1.516000e-01

Joint ci ratio: 5.007346e-02	ci left: 2.286420e-01	ci right 2.404352e-01	k: 4690	n:20000
Cons ci ratio: 2.432996e-02	ci left: 5.578949e-01	ci right 5.716862e-01	k: 11296	n:20000
KS ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
SPATA9   20000 perm   3 sec   (5871 perm/sec)   p_kst 7.780000e-02   p_cons 5.648000e-01   p_joint 2.345000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA9.3_785_20000_0.0778_0.5648_0.2345.png
                gene_name: SPATA9
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 61 percent done.
SPC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
SPC25   10000 perm   2 sec   (6368 perm/sec)   p_kst 7.680000e-01   p_cons 3.460000e-02   p_joint 1.547000e-01

Joint ci ratio: 6.348666e-02	ci left: 1.549932e-01	ci right 1.652058e-01	k: 3201	n:20000
Cons ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
KS ci ratio: 1.532874e-02	ci left: 7.598673e-01	ci right 7.716553e-01	k: 15316	n:20000
SPC25   20000 perm   4 sec   (5662 perm/sec)   p_kst 7.658000e-01   p_cons 3.440000e-02   p_joint 1.600500e-01

Joint ci ratio: 5.634245e-02	ci left: 1.350049e-01	ci right 1.428651e-01	k: 4167	n:30000
Cons ci ratio: 1.203285e-01	ci left: 3.210725e-02	ci right 3.625027e-02	k: 1024	n:30000
KS ci ratio: 1.247167e-02	ci left: 7.622411e-01	ci right 7.718405e-01	k: 23012	n:30000
SPC25   30000 perm   6 sec   (5378 perm/sec)   p_kst 7.670667e-01   p_cons 3.413333e-02   p_joint 1.389000e-01

Joint ci ratio: 4.836707e-02	ci left: 1.376278e-01	ci right 1.444744e-01	k: 5641	n:40000
Cons ci ratio: 1.034141e-01	ci left: 3.287904e-02	ci right 3.648892e-02	k: 1386	n:40000
KS ci ratio: 1.079978e-02	ci left: 7.629260e-01	ci right 7.712352e-01	k: 30684	n:40000
SPC25   40000 perm   8 sec   (5216 perm/sec)   p_kst 7.671000e-01   p_cons 3.465000e-02   p_joint 1.410250e-01

Joint ci ratio: 3.867556e-02	ci left: 1.671335e-01	ci right 1.737448e-01	k: 8521	n:50000
Cons ci ratio: 9.240687e-02	ci left: 3.313241e-02	ci right 3.636190e-02	k: 1736	n:50000
KS ci ratio: 9.689887e-03	ci left: 7.622436e-01	ci right 7.696855e-01	k: 38299	n:50000
SPC25   50000 perm   10 sec   (5078 perm/sec)   p_kst 7.659800e-01   p_cons 3.472000e-02   p_joint 1.704200e-01

Outputting figure to mutsig2_images.part000000000165/SPC25.3_699_50000_0.76598_0.03472_0.17042.png
                gene_name: SPC25
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 63 percent done.
SPIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
KS ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
SPIN3   10000 perm   1 sec   (6669 perm/sec)   p_kst 9.689000e-01   p_cons 8.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPIN3.3_781_10000_0.9689_0.8326_1.png
                gene_name: SPIN3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
SPN   10000 perm   2 sec   (6383 perm/sec)   p_kst 4.949000e-01   p_cons 5.493000e-01   p_joint 8.039000e-01

Outputting figure to mutsig2_images.part000000000165/SPN.3_1207_10000_0.4949_0.5493_0.8039.png
                gene_name: SPN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 67 percent done.
SPAG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
Cons ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
KS ci ratio: 2.592394e-02	ci left: 6.865760e-01	ci right 7.047099e-01	k: 6957	n:10000
SPAG7   10000 perm   1 sec   (6953 perm/sec)   p_kst 6.957000e-01   p_cons 3.288000e-01   p_joint 4.146000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG7.2_712_10000_0.6957_0.3288_0.4146.png
                gene_name: SPAG7
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 70 percent done.
SPANXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
SPANXN1   10000 perm   2 sec   (4795 perm/sec)   p_kst 1.966000e-01   p_cons 2.100000e-03   p_joint 2.100000e-03

Joint ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
Cons ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
KS ci ratio: 5.665190e-02	ci left: 1.876493e-01	ci right 1.986400e-01	k: 3862	n:20000
SPANXN1   20000 perm   4 sec   (4534 perm/sec)   p_kst 1.931000e-01   p_cons 1.850000e-03   p_joint 9.500000e-04

Joint ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
Cons ci ratio: 4.894689e-01	ci left: 1.614063e-03	ci right 2.686024e-03	k: 63	n:30000
KS ci ratio: 4.646259e-02	ci left: 1.872920e-01	ci right 1.962344e-01	k: 5752	n:30000
SPANXN1   30000 perm   6 sec   (4739 perm/sec)   p_kst 1.917333e-01   p_cons 2.100000e-03   p_joint 1.433333e-03

Joint ci ratio: 4.127340e-01	ci left: 1.787227e-03	ci right 2.737351e-03	k: 89	n:40000
Cons ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
KS ci ratio: 4.038341e-02	ci left: 1.867857e-01	ci right 1.945092e-01	k: 7625	n:40000
SPANXN1   40000 perm   8 sec   (4849 perm/sec)   p_kst 1.906250e-01   p_cons 2.175000e-03   p_joint 2.225000e-03

Joint ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
Cons ci ratio: 3.821471e-01	ci left: 1.699817e-03	ci right 2.519713e-03	k: 104	n:50000
KS ci ratio: 3.614935e-02	ci left: 1.869468e-01	ci right 1.938492e-01	k: 9519	n:50000
SPANXN1   50000 perm   10 sec   (4850 perm/sec)   p_kst 1.903800e-01   p_cons 2.080000e-03   p_joint 4.620000e-03

Joint ci ratio: 2.375827e-01	ci left: 3.980202e-03	ci right 5.068579e-03	k: 270	n:60000
Cons ci ratio: 3.530891e-01	ci left: 1.688838e-03	ci right 2.427324e-03	k: 122	n:60000
KS ci ratio: 3.291079e-02	ci left: 1.880767e-01	ci right 1.943866e-01	k: 11473	n:60000
SPANXN1   60000 perm   12 sec   (4839 perm/sec)   p_kst 1.912167e-01   p_cons 2.033333e-03   p_joint 4.500000e-03

Joint ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
Cons ci ratio: 3.207947e-01	ci left: 1.787663e-03	ci right 2.483213e-03	k: 148	n:70000
KS ci ratio: 3.043483e-02	ci left: 1.886618e-01	ci right 1.945066e-01	k: 13410	n:70000
SPANXN1   70000 perm   15 sec   (4802 perm/sec)   p_kst 1.915714e-01   p_cons 2.114286e-03   p_joint 4.757143e-03

Joint ci ratio: 1.952630e-01	ci left: 4.523008e-03	ci right 5.513412e-03	k: 400	n:80000
Cons ci ratio: 2.943173e-01	ci left: 1.887257e-03	ci right 2.549672e-03	k: 176	n:80000
KS ci ratio: 2.853352e-02	ci left: 1.881568e-01	ci right 1.936157e-01	k: 15270	n:80000
SPANXN1   80000 perm   17 sec   (4752 perm/sec)   p_kst 1.908750e-01   p_cons 2.200000e-03   p_joint 5.000000e-03

Joint ci ratio: 2.537583e-01	ci left: 2.309082e-03	ci right 2.990272e-03	k: 237	n:90000
Cons ci ratio: 2.833385e-01	ci left: 1.821843e-03	ci right 2.433181e-03	k: 190	n:90000
KS ci ratio: 2.682054e-02	ci left: 1.892432e-01	ci right 1.943989e-01	k: 17263	n:90000
SPANXN1   90000 perm   19 sec   (4697 perm/sec)   p_kst 1.918111e-01   p_cons 2.111111e-03   p_joint 2.633333e-03

Joint ci ratio: 2.409395e-01	ci left: 2.322069e-03	ci right 2.967318e-03	k: 263	n:100000
Cons ci ratio: 2.695777e-01	ci left: 1.825803e-03	ci right 2.403686e-03	k: 210	n:100000
KS ci ratio: 2.544111e-02	ci left: 1.894135e-01	ci right 1.943044e-01	k: 19185	n:100000
SPANXN1   100000 perm   22 sec   (4635 perm/sec)   p_kst 1.918500e-01   p_cons 2.100000e-03   p_joint 2.630000e-03

Joint ci ratio: 2.287026e-01	ci left: 2.359112e-03	ci right 2.976666e-03	k: 292	n:110000
Cons ci ratio: 2.576449e-01	ci left: 1.829630e-03	ci right 2.378970e-03	k: 230	n:110000
KS ci ratio: 2.425189e-02	ci left: 1.895946e-01	ci right 1.942581e-01	k: 21111	n:110000
SPANXN1   110000 perm   24 sec   (4578 perm/sec)   p_kst 1.919182e-01   p_cons 2.090909e-03   p_joint 2.654545e-03

Joint ci ratio: 2.178200e-01	ci left: 2.398551e-03	ci right 2.992555e-03	k: 322	n:120000
Cons ci ratio: 2.461873e-01	ci left: 1.848927e-03	ci right 2.375599e-03	k: 252	n:120000
KS ci ratio: 2.326962e-02	ci left: 1.890281e-01	ci right 1.934868e-01	k: 22950	n:120000
SPANXN1   120000 perm   27 sec   (4522 perm/sec)   p_kst 1.912500e-01   p_cons 2.100000e-03   p_joint 2.683333e-03

Joint ci ratio: 2.089507e-01	ci left: 2.417927e-03	ci right 2.989230e-03	k: 350	n:130000
Cons ci ratio: 2.369990e-01	ci left: 1.851238e-03	ci right 2.356000e-03	k: 272	n:130000
KS ci ratio: 2.237040e-02	ci left: 1.889275e-01	ci right 1.932093e-01	k: 24838	n:130000
SPANXN1   130000 perm   29 sec   (4463 perm/sec)   p_kst 1.910615e-01   p_cons 2.092308e-03   p_joint 2.692308e-03

Joint ci ratio: 1.992468e-01	ci left: 2.482456e-03	ci right 3.038457e-03	k: 385	n:140000
Cons ci ratio: 2.276036e-01	ci left: 1.873737e-03	ci right 2.361538e-03	k: 295	n:140000
KS ci ratio: 2.155352e-02	ci left: 1.890505e-01	ci right 1.931766e-01	k: 26755	n:140000
SPANXN1   140000 perm   32 sec   (4404 perm/sec)   p_kst 1.911071e-01   p_cons 2.107143e-03   p_joint 2.750000e-03

Joint ci ratio: 1.926242e-01	ci left: 2.488131e-03	ci right 3.024710e-03	k: 412	n:150000
Cons ci ratio: 2.202841e-01	ci left: 1.874677e-03	ci right 2.344901e-03	k: 315	n:150000
KS ci ratio: 2.081512e-02	ci left: 1.892325e-01	ci right 1.932194e-01	k: 28683	n:150000
SPANXN1   150000 perm   35 sec   (4344 perm/sec)   p_kst 1.912200e-01   p_cons 2.100000e-03   p_joint 2.746667e-03

Joint ci ratio: 1.864087e-01	ci left: 2.499323e-03	ci right 3.018956e-03	k: 440	n:160000
Cons ci ratio: 2.139475e-01	ci left: 1.869802e-03	ci right 2.323543e-03	k: 334	n:160000
KS ci ratio: 2.015630e-02	ci left: 1.892632e-01	ci right 1.931230e-01	k: 30590	n:160000
SPANXN1   160000 perm   37 sec   (4281 perm/sec)   p_kst 1.911875e-01   p_cons 2.087500e-03   p_joint 2.750000e-03

Joint ci ratio: 1.797998e-01	ci left: 2.537530e-03	ci right 3.044368e-03	k: 473	n:170000
Cons ci ratio: 2.063827e-01	ci left: 1.899138e-03	ci right 2.341646e-03	k: 359	n:170000
KS ci ratio: 1.955669e-02	ci left: 1.892861e-01	ci right 1.930303e-01	k: 32496	n:170000
SPANXN1   170000 perm   40 sec   (4226 perm/sec)   p_kst 1.911529e-01   p_cons 2.111765e-03   p_joint 2.782353e-03

Joint ci ratio: 1.740197e-01	ci left: 2.566467e-03	ci right 3.060873e-03	k: 505	n:180000
Cons ci ratio: 1.987927e-01	ci left: 1.941301e-03	ci right 2.374983e-03	k: 387	n:180000
KS ci ratio: 1.900487e-02	ci left: 1.893523e-01	ci right 1.929910e-01	k: 34410	n:180000
SPANXN1   180000 perm   43 sec   (4175 perm/sec)   p_kst 1.911667e-01   p_cons 2.150000e-03   p_joint 2.805556e-03

Joint ci ratio: 1.689208e-01	ci left: 2.587549e-03	ci right 3.069924e-03	k: 536	n:190000
Cons ci ratio: 1.933855e-01	ci left: 1.949234e-03	ci right 2.371449e-03	k: 409	n:190000
KS ci ratio: 1.850545e-02	ci left: 1.892765e-01	ci right 1.928171e-01	k: 36298	n:190000
SPANXN1   190000 perm   46 sec   (4125 perm/sec)   p_kst 1.910421e-01   p_cons 2.152632e-03   p_joint 2.821053e-03

Joint ci ratio: 1.657148e-01	ci left: 2.558771e-03	ci right 3.025825e-03	k: 557	n:200000
Cons ci ratio: 1.894990e-01	ci left: 1.932697e-03	ci right 2.341948e-03	k: 426	n:200000
KS ci ratio: 1.803265e-02	ci left: 1.893938e-01	ci right 1.928451e-01	k: 38223	n:200000
SPANXN1   200000 perm   49 sec   (4073 perm/sec)   p_kst 1.911150e-01   p_cons 2.130000e-03   p_joint 2.785000e-03

Joint ci ratio: 1.783457e-01	ci left: 2.090535e-03	ci right 2.504347e-03	k: 481	n:210000
Cons ci ratio: 1.845920e-01	ci left: 1.945061e-03	ci right 2.345071e-03	k: 449	n:210000
KS ci ratio: 1.759514e-02	ci left: 1.894868e-01	ci right 1.928551e-01	k: 40145	n:210000
SPANXN1   210000 perm   52 sec   (4004 perm/sec)   p_kst 1.911667e-01   p_cons 2.138095e-03   p_joint 2.290476e-03

Joint ci ratio: 1.735494e-01	ci left: 2.112836e-03	ci right 2.518637e-03	k: 508	n:220000
Cons ci ratio: 1.796673e-01	ci left: 1.965107e-03	ci right 2.357286e-03	k: 474	n:220000
KS ci ratio: 1.717841e-02	ci left: 1.897443e-01	ci right 1.930366e-01	k: 42105	n:220000
SPANXN1   220000 perm   56 sec   (3955 perm/sec)   p_kst 1.913864e-01   p_cons 2.154545e-03   p_joint 2.309091e-03

Joint ci ratio: 1.699167e-01	ci left: 2.112515e-03	ci right 2.508890e-03	k: 530	n:230000
Cons ci ratio: 1.756456e-01	ci left: 1.971067e-03	ci right 2.354696e-03	k: 496	n:230000
KS ci ratio: 1.679112e-02	ci left: 1.899586e-01	ci right 1.931796e-01	k: 44060	n:230000
SPANXN1   230000 perm   59 sec   (3907 perm/sec)   p_kst 1.915652e-01   p_cons 2.156522e-03   p_joint 2.304348e-03

Joint ci ratio: 1.653086e-01	ci left: 2.144253e-03	ci right 2.534588e-03	k: 560	n:240000
Cons ci ratio: 1.710586e-01	ci left: 1.996561e-03	ci right 2.373956e-03	k: 523	n:240000
KS ci ratio: 1.643221e-02	ci left: 1.900936e-01	ci right 1.932472e-01	k: 46000	n:240000
SPANXN1   240000 perm   62 sec   (3855 perm/sec)   p_kst 1.916667e-01   p_cons 2.179167e-03   p_joint 2.333333e-03

Joint ci ratio: 1.628616e-01	ci left: 2.123689e-03	ci right 2.503997e-03	k: 577	n:250000
Cons ci ratio: 1.685073e-01	ci left: 1.977977e-03	ci right 2.345717e-03	k: 539	n:250000
KS ci ratio: 1.610681e-02	ci left: 1.899990e-01	ci right 1.930881e-01	k: 47885	n:250000
SPANXN1   250000 perm   66 sec   (3808 perm/sec)   p_kst 1.915400e-01   p_cons 2.156000e-03   p_joint 2.308000e-03

Joint ci ratio: 1.595819e-01	ci left: 2.130593e-03	ci right 2.503717e-03	k: 601	n:260000
Cons ci ratio: 1.650290e-01	ci left: 1.986671e-03	ci right 2.347647e-03	k: 562	n:260000
KS ci ratio: 1.579176e-02	ci left: 1.900734e-01	ci right 1.931027e-01	k: 49812	n:260000
SPANXN1   260000 perm   69 sec   (3762 perm/sec)   p_kst 1.915846e-01   p_cons 2.161538e-03   p_joint 2.311538e-03

Joint ci ratio: 1.564927e-01	ci left: 2.137056e-03	ci right 2.503387e-03	k: 625	n:270000
Cons ci ratio: 1.621741e-01	ci left: 1.984132e-03	ci right 2.337801e-03	k: 582	n:270000
KS ci ratio: 1.549006e-02	ci left: 1.902314e-01	ci right 1.932048e-01	k: 51763	n:270000
SPANXN1   270000 perm   73 sec   (3716 perm/sec)   p_kst 1.917148e-01   p_cons 2.155556e-03   p_joint 2.314815e-03

Joint ci ratio: 1.539327e-01	ci left: 2.132819e-03	ci right 2.491892e-03	k: 646	n:280000
Cons ci ratio: 1.597282e-01	ci left: 1.974966e-03	ci right 2.321182e-03	k: 600	n:280000
KS ci ratio: 1.520992e-02	ci left: 1.902790e-01	ci right 1.931988e-01	k: 53686	n:280000
SPANXN1   280000 perm   76 sec   (3671 perm/sec)   p_kst 1.917357e-01   p_cons 2.142857e-03   p_joint 2.307143e-03

Joint ci ratio: 1.511545e-01	ci left: 2.138874e-03	ci right 2.491879e-03	k: 670	n:290000
Cons ci ratio: 1.572623e-01	ci left: 1.969782e-03	ci right 2.309256e-03	k: 619	n:290000
KS ci ratio: 1.494627e-02	ci left: 1.902859e-01	ci right 1.931548e-01	k: 55598	n:290000
SPANXN1   290000 perm   80 sec   (3626 perm/sec)   p_kst 1.917172e-01   p_cons 2.134483e-03   p_joint 2.310345e-03

Joint ci ratio: 1.484145e-01	ci left: 2.147789e-03	ci right 2.495270e-03	k: 695	n:300000
Cons ci ratio: 1.545442e-01	ci left: 1.974595e-03	ci right 2.308472e-03	k: 641	n:300000
KS ci ratio: 1.469857e-02	ci left: 1.902362e-01	ci right 1.930564e-01	k: 57493	n:300000
SPANXN1   300000 perm   84 sec   (3583 perm/sec)   p_kst 1.916433e-01   p_cons 2.136667e-03   p_joint 2.316667e-03

Joint ci ratio: 1.459198e-01	ci left: 2.153075e-03	ci right 2.495045e-03	k: 719	n:310000
Cons ci ratio: 1.518477e-01	ci left: 1.982249e-03	ci right 2.311040e-03	k: 664	n:310000
KS ci ratio: 1.446113e-02	ci left: 1.902255e-01	ci right 1.929996e-01	k: 59399	n:310000
SPANXN1   310000 perm   88 sec   (3540 perm/sec)   p_kst 1.916097e-01   p_cons 2.141935e-03   p_joint 2.319355e-03

Joint ci ratio: 1.299767e-01	ci left: 2.650106e-03	ci right 3.021489e-03	k: 906	n:320000
Cons ci ratio: 1.489625e-01	ci left: 1.998497e-03	ci right 2.323124e-03	k: 690	n:320000
KS ci ratio: 1.423498e-02	ci left: 1.902127e-01	ci right 1.929429e-01	k: 61304	n:320000
SPANXN1   320000 perm   92 sec   (3485 perm/sec)   p_kst 1.915750e-01   p_cons 2.156250e-03   p_joint 2.831250e-03

Joint ci ratio: 1.278103e-01	ci left: 2.660711e-03	ci right 3.026894e-03	k: 937	n:330000
Cons ci ratio: 1.467494e-01	ci left: 1.999219e-03	ci right 2.318715e-03	k: 711	n:330000
KS ci ratio: 1.401596e-02	ci left: 1.902705e-01	ci right 1.929591e-01	k: 63232	n:330000
SPANXN1   330000 perm   96 sec   (3437 perm/sec)   p_kst 1.916121e-01   p_cons 2.154545e-03   p_joint 2.839394e-03

Joint ci ratio: 1.391286e-01	ci left: 2.167316e-03	ci right 2.494200e-03	k: 791	n:340000
Cons ci ratio: 1.447311e-01	ci left: 1.997097e-03	ci right 2.311485e-03	k: 731	n:340000
KS ci ratio: 1.380859e-02	ci left: 1.902842e-01	ci right 1.929329e-01	k: 65146	n:340000
SPANXN1   340000 perm   100 sec   (3394 perm/sec)   p_kst 1.916059e-01   p_cons 2.150000e-03   p_joint 2.326471e-03

Joint ci ratio: 1.475917e-01	ci left: 1.862953e-03	ci right 2.162531e-03	k: 703	n:350000
Cons ci ratio: 1.423205e-01	ci left: 2.008901e-03	ci right 2.319433e-03	k: 756	n:350000
KS ci ratio: 1.361367e-02	ci left: 1.902175e-01	ci right 1.928276e-01	k: 67032	n:350000
SPANXN1   350000 perm   105 sec   (3345 perm/sec)   p_kst 1.915200e-01   p_cons 2.160000e-03   p_joint 2.008571e-03

Joint ci ratio: 1.452377e-01	ci left: 1.872753e-03	ci right 2.168688e-03	k: 726	n:360000
Cons ci ratio: 1.402963e-01	ci left: 2.012049e-03	ci right 2.318275e-03	k: 778	n:360000
KS ci ratio: 1.342522e-02	ci left: 1.901908e-01	ci right 1.927642e-01	k: 68931	n:360000
SPANXN1   360000 perm   109 sec   (3306 perm/sec)   p_kst 1.914750e-01   p_cons 2.161111e-03   p_joint 2.016667e-03

Joint ci ratio: 1.508550e-01	ci left: 1.684187e-03	ci right 1.961547e-03	k: 673	n:370000
Cons ci ratio: 1.388784e-01	ci left: 1.999402e-03	ci right 2.300372e-03	k: 794	n:370000
KS ci ratio: 1.324831e-02	ci left: 1.900742e-01	ci right 1.926118e-01	k: 70796	n:370000
SPANXN1   370000 perm   113 sec   (3265 perm/sec)   p_kst 1.913405e-01   p_cons 2.145946e-03   p_joint 1.818919e-03

Joint ci ratio: 1.494219e-01	ci left: 1.672790e-03	ci right 1.945423e-03	k: 686	n:380000
Cons ci ratio: 1.371641e-01	ci left: 1.997600e-03	ci right 2.294284e-03	k: 814	n:380000
KS ci ratio: 1.307922e-02	ci left: 1.899402e-01	ci right 1.924434e-01	k: 72652	n:380000
SPANXN1   380000 perm   118 sec   (3220 perm/sec)   p_kst 1.911895e-01   p_cons 2.142105e-03   p_joint 1.805263e-03

Joint ci ratio: 1.470846e-01	ci left: 1.684217e-03	ci right 1.954040e-03	k: 708	n:390000
Cons ci ratio: 1.347857e-01	ci left: 2.018210e-03	ci right 2.312342e-03	k: 843	n:390000
KS ci ratio: 1.291333e-02	ci left: 1.898875e-01	ci right 1.923581e-01	k: 74537	n:390000
SPANXN1   390000 perm   123 sec   (3183 perm/sec)   p_kst 1.911205e-01   p_cons 2.161538e-03   p_joint 1.815385e-03

Joint ci ratio: 1.596468e-01	ci left: 1.384842e-03	ci right 1.627471e-03	k: 601	n:400000
Cons ci ratio: 1.333716e-01	ci left: 2.011245e-03	ci right 2.301042e-03	k: 861	n:400000
KS ci ratio: 1.275597e-02	ci left: 1.897803e-01	ci right 1.922192e-01	k: 76399	n:400000
SPANXN1   400000 perm   127 sec   (3148 perm/sec)   p_kst 1.909975e-01   p_cons 2.152500e-03   p_joint 1.502500e-03

Joint ci ratio: 1.575664e-01	ci left: 1.388541e-03	ci right 1.628348e-03	k: 617	n:410000
Cons ci ratio: 1.313298e-01	ci left: 2.025865e-03	ci right 2.312951e-03	k: 888	n:410000
KS ci ratio: 1.260323e-02	ci left: 1.897028e-01	ci right 1.921113e-01	k: 78271	n:410000
SPANXN1   410000 perm   132 sec   (3113 perm/sec)   p_kst 1.909049e-01   p_cons 2.165854e-03   p_joint 1.504878e-03

Joint ci ratio: 1.554426e-01	ci left: 1.394372e-03	ci right 1.631638e-03	k: 634	n:420000
Cons ci ratio: 1.300207e-01	ci left: 2.019085e-03	ci right 2.302139e-03	k: 906	n:420000
KS ci ratio: 1.245373e-02	ci left: 1.896815e-01	ci right 1.920609e-01	k: 80165	n:420000
SPANXN1   420000 perm   137 sec   (3069 perm/sec)   p_kst 1.908690e-01   p_cons 2.157143e-03   p_joint 1.509524e-03

Joint ci ratio: 1.532848e-01	ci left: 1.402189e-03	ci right 1.637168e-03	k: 652	n:430000
Cons ci ratio: 1.287500e-01	ci left: 2.012635e-03	ci right 2.291816e-03	k: 924	n:430000
KS ci ratio: 1.230674e-02	ci left: 1.897286e-01	ci right 1.920803e-01	k: 82088	n:430000
SPANXN1   430000 perm   142 sec   (3030 perm/sec)   p_kst 1.909023e-01   p_cons 2.148837e-03   p_joint 1.516279e-03

Joint ci ratio: 1.521253e-01	ci left: 1.392179e-03	ci right 1.623556e-03	k: 662	n:440000
Cons ci ratio: 1.273130e-01	ci left: 2.013092e-03	ci right 2.288984e-03	k: 945	n:440000
KS ci ratio: 1.217120e-02	ci left: 1.896127e-01	ci right 1.919369e-01	k: 83940	n:440000
SPANXN1   440000 perm   147 sec   (2999 perm/sec)   p_kst 1.907727e-01   p_cons 2.147727e-03   p_joint 1.504545e-03

Joint ci ratio: 1.492256e-01	ci left: 1.416843e-03	ci right 1.647429e-03	k: 688	n:450000
Cons ci ratio: 1.248282e-01	ci left: 2.050140e-03	ci right 2.325221e-03	k: 983	n:450000
KS ci ratio: 1.203926e-02	ci left: 1.895220e-01	ci right 1.918197e-01	k: 85801	n:450000
SPANXN1   450000 perm   152 sec   (2964 perm/sec)   p_kst 1.906689e-01   p_cons 2.184444e-03   p_joint 1.528889e-03

Joint ci ratio: 1.478378e-01	ci left: 1.413252e-03	ci right 1.640926e-03	k: 701	n:460000
Cons ci ratio: 1.238263e-01	ci left: 2.039272e-03	ci right 2.310538e-03	k: 999	n:460000
KS ci ratio: 1.190555e-02	ci left: 1.895895e-01	ci right 1.918623e-01	k: 87733	n:460000
SPANXN1   460000 perm   157 sec   (2930 perm/sec)   p_kst 1.907239e-01   p_cons 2.171739e-03   p_joint 1.523913e-03

Joint ci ratio: 1.457750e-01	ci left: 1.424174e-03	ci right 1.650128e-03	k: 721	n:470000
Cons ci ratio: 1.227272e-01	ci left: 2.033000e-03	ci right 2.300856e-03	k: 1017	n:470000
KS ci ratio: 1.178116e-02	ci left: 1.895246e-01	ci right 1.917728e-01	k: 89604	n:470000
SPANXN1   470000 perm   162 sec   (2898 perm/sec)   p_kst 1.906468e-01   p_cons 2.163830e-03   p_joint 1.534043e-03

Joint ci ratio: 1.310556e-01	ci left: 1.738469e-03	ci right 1.984273e-03	k: 892	n:480000
Cons ci ratio: 1.211888e-01	ci left: 2.043161e-03	ci right 2.308739e-03	k: 1043	n:480000
KS ci ratio: 1.165312e-02	ci left: 1.896601e-01	ci right 1.918853e-01	k: 91570	n:480000
SPANXN1   480000 perm   167 sec   (2869 perm/sec)   p_kst 1.907708e-01   p_cons 2.172917e-03   p_joint 1.858333e-03

Joint ci ratio: 1.433158e-01	ci left: 1.415219e-03	ci right 1.635640e-03	k: 746	n:490000
Cons ci ratio: 1.199317e-01	ci left: 2.045007e-03	ci right 2.307873e-03	k: 1065	n:490000
KS ci ratio: 1.153479e-02	ci left: 1.896395e-01	ci right 1.918417e-01	k: 93462	n:490000
SPANXN1   490000 perm   173 sec   (2840 perm/sec)   p_kst 1.907388e-01   p_cons 2.173469e-03   p_joint 1.522449e-03

Joint ci ratio: 1.419916e-01	ci left: 1.413915e-03	ci right 1.631926e-03	k: 760	n:500000
Cons ci ratio: 1.187130e-01	ci left: 2.046794e-03	ci right 2.307028e-03	k: 1087	n:500000
KS ci ratio: 1.141712e-02	ci left: 1.896977e-01	ci right 1.918779e-01	k: 95393	n:500000
SPANXN1   500000 perm   178 sec   (2804 perm/sec)   p_kst 1.907860e-01   p_cons 2.174000e-03   p_joint 1.520000e-03

Joint ci ratio: 1.406126e-01	ci left: 1.414563e-03	ci right 1.630379e-03	k: 775	n:510000
Cons ci ratio: 1.172662e-01	ci left: 2.058040e-03	ci right 2.316295e-03	k: 1114	n:510000
KS ci ratio: 1.129989e-02	ci left: 1.898378e-01	ci right 1.919971e-01	k: 97367	n:510000
SPANXN1   510000 perm   184 sec   (2775 perm/sec)   p_kst 1.909157e-01   p_cons 2.184314e-03   p_joint 1.519608e-03

Joint ci ratio: 1.383131e-01	ci left: 1.435617e-03	ci right 1.650767e-03	k: 801	n:520000
Cons ci ratio: 1.155673e-01	ci left: 2.080078e-03	ci right 2.337057e-03	k: 1147	n:520000
KS ci ratio: 1.118591e-02	ci left: 1.899803e-01	ci right 1.921193e-01	k: 99345	n:520000
SPANXN1   520000 perm   189 sec   (2750 perm/sec)   p_kst 1.910481e-01   p_cons 2.205769e-03   p_joint 1.540385e-03

Joint ci ratio: 1.366195e-01	ci left: 1.444968e-03	ci right 1.658653e-03	k: 821	n:530000
Cons ci ratio: 1.144266e-01	ci left: 2.082979e-03	ci right 2.337606e-03	k: 1170	n:530000
KS ci ratio: 1.107877e-02	ci left: 1.900215e-01	ci right 1.921403e-01	k: 101272	n:530000
SPANXN1   530000 perm   195 sec   (2725 perm/sec)   p_kst 1.910792e-01   p_cons 2.207547e-03   p_joint 1.549057e-03

Joint ci ratio: 1.232306e-01	ci left: 1.755088e-03	ci right 1.987345e-03	k: 1009	n:540000
Cons ci ratio: 1.135097e-01	ci left: 2.078587e-03	ci right 2.330505e-03	k: 1189	n:540000
KS ci ratio: 1.097787e-02	ci left: 1.899708e-01	ci right 1.920696e-01	k: 103150	n:540000
SPANXN1   540000 perm   200 sec   (2696 perm/sec)   p_kst 1.910185e-01   p_cons 2.201852e-03   p_joint 1.868519e-03

Joint ci ratio: 1.222662e-01	ci left: 1.751375e-03	ci right 1.981196e-03	k: 1025	n:550000
Cons ci ratio: 1.126146e-01	ci left: 2.074363e-03	ci right 2.323654e-03	k: 1208	n:550000
KS ci ratio: 1.087494e-02	ci left: 1.900562e-01	ci right 1.921361e-01	k: 105102	n:550000
SPANXN1   550000 perm   206 sec   (2669 perm/sec)   p_kst 1.910945e-01   p_cons 2.196364e-03   p_joint 1.863636e-03

Joint ci ratio: 1.213242e-01	ci left: 1.747801e-03	ci right 1.975259e-03	k: 1041	n:560000
Cons ci ratio: 1.118316e-01	ci left: 2.066825e-03	ci right 2.313370e-03	k: 1225	n:560000
KS ci ratio: 1.077902e-02	ci left: 1.900193e-01	ci right 1.920803e-01	k: 106987	n:560000
SPANXN1   560000 perm   212 sec   (2642 perm/sec)   p_kst 1.910482e-01   p_cons 2.187500e-03   p_joint 1.858929e-03

Joint ci ratio: 1.202329e-01	ci left: 1.749464e-03	ci right 1.974945e-03	k: 1060	n:570000
Cons ci ratio: 1.109753e-01	ci left: 2.062970e-03	ci right 2.307047e-03	k: 1244	n:570000
KS ci ratio: 1.068717e-02	ci left: 1.899382e-01	ci right 1.919807e-01	k: 108846	n:570000
SPANXN1   570000 perm   218 sec   (2617 perm/sec)   p_kst 1.909579e-01   p_cons 2.182456e-03   p_joint 1.859649e-03

Joint ci ratio: 1.192259e-01	ci left: 1.749406e-03	ci right 1.972858e-03	k: 1078	n:580000
Cons ci ratio: 1.098773e-01	ci left: 2.069314e-03	ci right 2.311563e-03	k: 1269	n:580000
KS ci ratio: 1.059349e-02	ci left: 1.899804e-01	ci right 1.920054e-01	k: 110775	n:580000
SPANXN1   580000 perm   224 sec   (2593 perm/sec)   p_kst 1.909914e-01   p_cons 2.187931e-03   p_joint 1.858621e-03

Joint ci ratio: 1.180821e-01	ci left: 1.754292e-03	ci right 1.976068e-03	k: 1099	n:590000
Cons ci ratio: 1.088533e-01	ci left: 2.073807e-03	ci right 2.314174e-03	k: 1293	n:590000
KS ci ratio: 1.050552e-02	ci left: 1.899249e-01	ci right 1.919324e-01	k: 112647	n:590000
SPANXN1   590000 perm   230 sec   (2567 perm/sec)   p_kst 1.909271e-01   p_cons 2.191525e-03   p_joint 1.862712e-03

Joint ci ratio: 1.284421e-01	ci left: 1.450427e-03	ci right 1.651102e-03	k: 929	n:600000
Cons ci ratio: 1.077756e-01	ci left: 2.081403e-03	ci right 2.320111e-03	k: 1319	n:600000
KS ci ratio: 1.041841e-02	ci left: 1.899096e-01	ci right 1.919001e-01	k: 114542	n:600000
SPANXN1   600000 perm   236 sec   (2542 perm/sec)   p_kst 1.909033e-01   p_cons 2.198333e-03   p_joint 1.548333e-03

Joint ci ratio: 1.272839e-01	ci left: 1.453627e-03	ci right 1.652795e-03	k: 946	n:610000
Cons ci ratio: 1.070887e-01	ci left: 2.074401e-03	ci right 2.310694e-03	k: 1336	n:610000
KS ci ratio: 1.033244e-02	ci left: 1.899242e-01	ci right 1.918984e-01	k: 116455	n:610000
SPANXN1   610000 perm   242 sec   (2518 perm/sec)   p_kst 1.909098e-01   p_cons 2.190164e-03   p_joint 1.550820e-03

Joint ci ratio: 1.018773e-01	ci left: 2.260863e-03	ci right 2.505114e-03	k: 1476	n:620000
Cons ci ratio: 1.062183e-01	ci left: 2.075481e-03	ci right 2.309855e-03	k: 1358	n:620000
KS ci ratio: 1.024632e-02	ci left: 1.900061e-01	ci right 1.919645e-01	k: 118410	n:620000
SPANXN1   620000 perm   248 sec   (2495 perm/sec)   p_kst 1.909839e-01   p_cons 2.190323e-03   p_joint 2.380645e-03

Joint ci ratio: 1.013987e-01	ci left: 2.246633e-03	ci right 2.488138e-03	k: 1490	n:630000
Cons ci ratio: 1.056761e-01	ci left: 2.064169e-03	ci right 2.296002e-03	k: 1372	n:630000
KS ci ratio: 1.016645e-02	ci left: 1.899603e-01	ci right 1.919029e-01	k: 120286	n:630000
SPANXN1   630000 perm   255 sec   (2472 perm/sec)   p_kst 1.909302e-01   p_cons 2.177778e-03   p_joint 2.365079e-03

Joint ci ratio: 1.134816e-01	ci left: 1.755309e-03	ci right 1.967990e-03	k: 1190	n:640000
Cons ci ratio: 1.049149e-01	ci left: 2.062343e-03	ci right 2.292200e-03	k: 1392	n:640000
KS ci ratio: 1.008535e-02	ci left: 1.900095e-01	ci right 1.919371e-01	k: 122222	n:640000
SPANXN1   640000 perm   261 sec   (2448 perm/sec)   p_kst 1.909719e-01   p_cons 2.175000e-03   p_joint 1.859375e-03

Joint ci ratio: 1.124475e-01	ci left: 1.761195e-03	ci right 1.972515e-03	k: 1212	n:650000
Cons ci ratio: 1.040224e-01	ci left: 2.066574e-03	ci right 2.294823e-03	k: 1416	n:650000
KS ci ratio: 1.000770e-02	ci left: 1.900097e-01	ci right 1.919223e-01	k: 124127	n:650000
SPANXN1   650000 perm   268 sec   (2426 perm/sec)   p_kst 1.909646e-01   p_cons 2.178462e-03   p_joint 1.864615e-03

Joint ci ratio: 1.114864e-01	ci left: 1.765437e-03	ci right 1.975337e-03	k: 1233	n:660000
Cons ci ratio: 1.033682e-01	ci left: 2.061827e-03	ci right 2.288033e-03	k: 1434	n:660000
KS ci ratio: 9.932457e-03	ci left: 1.899903e-01	ci right 1.918882e-01	k: 126019	n:660000
SPANXN1   660000 perm   274 sec   (2405 perm/sec)   p_kst 1.909379e-01   p_cons 2.172727e-03   p_joint 1.868182e-03

Joint ci ratio: 1.218120e-01	ci left: 1.449258e-03	ci right 1.638676e-03	k: 1033	n:670000
Cons ci ratio: 1.026909e-01	ci left: 2.058681e-03	ci right 2.282972e-03	k: 1453	n:670000
KS ci ratio: 9.856360e-03	ci left: 1.900504e-01	ci right 1.919344e-01	k: 127964	n:670000
SPANXN1   670000 perm   281 sec   (2382 perm/sec)   p_kst 1.909910e-01   p_cons 2.168657e-03   p_joint 1.541791e-03

Joint ci ratio: 1.205931e-01	ci left: 1.457892e-03	ci right 1.646395e-03	k: 1054	n:680000
Cons ci ratio: 1.016813e-01	ci left: 2.069964e-03	ci right 2.293135e-03	k: 1482	n:680000
KS ci ratio: 9.786596e-03	ci left: 1.899635e-01	ci right 1.918332e-01	k: 129810	n:680000
SPANXN1   680000 perm   289 sec   (2354 perm/sec)   p_kst 1.908971e-01   p_cons 2.179412e-03   p_joint 1.550000e-03

Joint ci ratio: 1.085351e-01	ci left: 1.784520e-03	ci right 1.990713e-03	k: 1301	n:690000
Cons ci ratio: 1.008012e-01	ci left: 2.076692e-03	ci right 2.298535e-03	k: 1508	n:690000
KS ci ratio: 9.714143e-03	ci left: 1.900109e-01	ci right 1.918671e-01	k: 131747	n:690000
SPANXN1   690000 perm   296 sec   (2328 perm/sec)   p_kst 1.909377e-01   p_cons 2.185507e-03   p_joint 1.885507e-03

Joint ci ratio: 1.079155e-01	ci left: 1.779875e-03	ci right 1.984283e-03	k: 1316	n:700000
Cons ci ratio: 1.001071e-01	ci left: 2.076271e-03	ci right 2.296453e-03	k: 1529	n:700000
KS ci ratio: 9.644123e-03	ci left: 1.900298e-01	ci right 1.918728e-01	k: 133665	n:700000
SPANXN1   700000 perm   305 sec   (2298 perm/sec)   p_kst 1.909500e-01   p_cons 2.184286e-03   p_joint 1.880000e-03

Joint ci ratio: 1.071053e-01	ci left: 1.782218e-03	ci right 1.985261e-03	k: 1336	n:710000
Cons ci ratio: 9.939504e-02	ci left: 2.077241e-03	ci right 2.295867e-03	k: 1551	n:710000
KS ci ratio: 9.575944e-03	ci left: 1.900370e-01	ci right 1.918669e-01	k: 135575	n:710000
SPANXN1   710000 perm   312 sec   (2277 perm/sec)   p_kst 1.909507e-01   p_cons 2.184507e-03   p_joint 1.881690e-03

Joint ci ratio: 1.065887e-01	ci left: 1.775037e-03	ci right 1.976226e-03	k: 1349	n:720000
Cons ci ratio: 9.872940e-02	ci left: 2.076834e-03	ci right 2.293869e-03	k: 1572	n:720000
KS ci ratio: 9.508465e-03	ci left: 1.900676e-01	ci right 1.918849e-01	k: 137502	n:720000
SPANXN1   720000 perm   319 sec   (2257 perm/sec)   p_kst 1.909750e-01   p_cons 2.183333e-03   p_joint 1.873611e-03

Joint ci ratio: 1.058465e-01	ci left: 1.776058e-03	ci right 1.975873e-03	k: 1368	n:730000
Cons ci ratio: 9.810779e-02	ci left: 2.075107e-03	ci right 2.290518e-03	k: 1592	n:730000
KS ci ratio: 9.442267e-03	ci left: 1.901015e-01	ci right 1.919064e-01	k: 139432	n:730000
SPANXN1   730000 perm   326 sec   (2237 perm/sec)   p_kst 1.910027e-01   p_cons 2.180822e-03   p_joint 1.873973e-03

Joint ci ratio: 8.483446e-02	ci left: 2.754945e-03	ci right 3.000324e-03	k: 2128	n:740000
Cons ci ratio: 9.761917e-02	ci left: 2.068157e-03	ci right 2.281716e-03	k: 1608	n:740000
KS ci ratio: 9.379319e-03	ci left: 1.900725e-01	ci right 1.918650e-01	k: 141316	n:740000
SPANXN1   740000 perm   334 sec   (2218 perm/sec)   p_kst 1.909676e-01   p_cons 2.172973e-03   p_joint 2.875676e-03

Outputting figure to mutsig2_images.part000000000165/SPANXN1.2_227_740000_0.19097_0.002173_0.0028757.png
                gene_name: SPANXN1
               theta_stop: 0.098 
                    nperm: 740000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0022 
      ci_cons_bounds_left: 0.0021 
     ci_cons_bounds_right: 0.0023 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0028 
    ci_joint_bounds_right: 0.0030 

Current progress: 72 percent done.
SPANXN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
SPANXN5   10000 perm   2 sec   (4094 perm/sec)   p_kst 6.030000e-01   p_cons 2.990000e-01   p_joint 9.765000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN5.2_227_10000_0.603_0.299_0.9765.png
                gene_name: SPANXN5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 74 percent done.
SPATA19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
SPATA19   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.676000e-01   p_cons 5.291000e-01   p_joint 6.369000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA19.2_528_10000_0.3676_0.5291_0.6369.png
                gene_name: SPATA19
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
SPATA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
Cons ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
SPATA2   10000 perm   2 sec   (6191 perm/sec)   p_kst 2.999000e-01   p_cons 5.327000e-01   p_joint 4.798000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA2.2_1571_10000_0.2999_0.5327_0.4798.png
                gene_name: SPATA2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 78 percent done.
SPDYE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
Cons ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
SPDYE3   10000 perm   2 sec   (6448 perm/sec)   p_kst 1.744000e-01   p_cons 6.100000e-01   p_joint 2.334000e-01

Outputting figure to mutsig2_images.part000000000165/SPDYE3.2_1690_10000_0.1744_0.61_0.2334.png
                gene_name: SPDYE3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 80 percent done.
SPDYE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
Cons ci ratio: 1.518969e-03	ci left: 9.976522e-01	ci right 9.992344e-01	k: 9986	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
SPDYE5   10000 perm   1 sec   (6691 perm/sec)   p_kst 2.518000e-01   p_cons 9.986000e-01   p_joint 6.599000e-01

Outputting figure to mutsig2_images.part000000000165/SPDYE5.2_1042_10000_0.2518_0.9986_0.6599.png
                gene_name: SPDYE5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 83 percent done.
SPDYE6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
Cons ci ratio: 1.247186e-01	ci left: 8.427506e-02	ci right 9.558313e-02	k: 898	n:9999
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
SPDYE6   10000 perm   2 sec   (5836 perm/sec)   p_kst 3.305000e-01   p_cons 8.980898e-02   p_joint 1.179000e-01

Joint ci ratio: 7.559884e-02	ci left: 1.140023e-01	ci right 1.230090e-01	k: 2369	n:20000
Cons ci ratio: 8.903667e-02	ci left: 8.441973e-02	ci right 9.233576e-02	k: 1766	n:19996
KS ci ratio: 3.937558e-02	ci left: 3.247767e-01	ci right 3.378723e-01	k: 6626	n:20000
SPDYE6   20000 perm   4 sec   (4588 perm/sec)   p_kst 3.313000e-01   p_cons 8.831766e-02   p_joint 1.184500e-01

Outputting figure to mutsig2_images.part000000000165/SPDYE6.2_1237_20000_0.3313_0.088318_0.11845.png
                gene_name: SPDYE6
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 85 percent done.
SPEM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
SPEM1   10000 perm   1 sec   (6906 perm/sec)   p_kst 3.297000e-01   p_cons 1.709000e-01   p_joint 1.789000e-01

Outputting figure to mutsig2_images.part000000000165/SPEM1.2_942_10000_0.3297_0.1709_0.1789.png
                gene_name: SPEM1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 87 percent done.
SPG21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
SPG21   10000 perm   1 sec   (6843 perm/sec)   p_kst 9.370000e-02   p_cons 2.880000e-01   p_joint 1.128000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.355601e-02	ci left: 2.819290e-01	ci right 2.945326e-01	k: 5764	n:20000
KS ci ratio: 8.630591e-02	ci left: 8.945046e-02	ci right 9.756816e-02	k: 1869	n:20000
SPG21   20000 perm   3 sec   (6042 perm/sec)   p_kst 9.345000e-02   p_cons 2.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPG21.2_959_20000_0.09345_0.2882_1.png
                gene_name: SPG21
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SPHK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
KS ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
SPHK2   10000 perm   2 sec   (6060 perm/sec)   p_kst 5.898000e-01   p_cons 2.268000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPHK2.2_1989_10000_0.5898_0.2268_1.png
                gene_name: SPHK2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
SPIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
Cons ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
KS ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
SPIC   10000 perm   1 sec   (7125 perm/sec)   p_kst 7.010000e-01   p_cons 8.210000e-01   p_joint 9.938000e-01

Outputting figure to mutsig2_images.part000000000165/SPIC.2_761_10000_0.701_0.821_0.9938.png
                gene_name: SPIC
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 93 percent done.
SPIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
SPIN4   10000 perm   1 sec   (6893 perm/sec)   p_kst 8.816000e-01   p_cons 5.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPIN4.2_754_10000_0.8816_0.5773_1.png
                gene_name: SPIN4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SPINK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
SPINK13   10000 perm   1 sec   (7131 perm/sec)   p_kst 4.660000e-02   p_cons 7.315000e-01   p_joint 3.188000e-01

Joint ci ratio: 3.476845e-02	ci left: 3.817864e-01	ci right 3.953460e-01	k: 7771	n:20000
Cons ci ratio: 1.630830e-02	ci left: 7.367327e-01	ci right 7.488966e-01	k: 14857	n:20000
KS ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
SPINK13   20000 perm   3 sec   (6255 perm/sec)   p_kst 4.600000e-02   p_cons 7.428500e-01   p_joint 3.885500e-01

Joint ci ratio: 3.262131e-02	ci left: 3.196009e-01	ci right 3.302331e-01	k: 9747	n:30000
Cons ci ratio: 1.332444e-02	ci left: 7.376127e-01	ci right 7.475403e-01	k: 22278	n:30000
KS ci ratio: 1.039371e-01	ci left: 4.290919e-02	ci right 4.764604e-02	k: 1357	n:30000
SPINK13   30000 perm   5 sec   (5939 perm/sec)   p_kst 4.523333e-02   p_cons 7.426000e-01   p_joint 3.249000e-01

Joint ci ratio: 2.836774e-02	ci left: 3.185175e-01	ci right 3.277082e-01	k: 12924	n:40000
Cons ci ratio: 1.156649e-02	ci left: 7.373807e-01	ci right 7.459842e-01	k: 29668	n:40000
KS ci ratio: 9.066124e-02	ci left: 4.262216e-02	ci right 4.669427e-02	k: 1785	n:40000
SPINK13   40000 perm   7 sec   (5719 perm/sec)   p_kst 4.462500e-02   p_cons 7.417000e-01   p_joint 3.231000e-01

Outputting figure to mutsig2_images.part000000000165/SPINK13.2_301_40000_0.044625_0.7417_0.3231.png
                gene_name: SPINK13
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 98 percent done.
SPINT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
Cons ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
KS ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
SPINT4   10000 perm   1 sec   (7102 perm/sec)   p_kst 9.029000e-01   p_cons 7.275000e-01   p_joint 8.607000e-01

Outputting figure to mutsig2_images.part000000000165/SPINT4.2_312_10000_0.9029_0.7275_0.8607.png
                gene_name: SPINT4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000165
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 165 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 4422576: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000166> was used as the working directory.
Started at Wed Oct 24 18:08:44 2012
Results reported at Wed Oct 24 20:05:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000166.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000166.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 166  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000166.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7186.72 sec.
    Max Memory :      6505 MB
    Max Swap   :      8866 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
166
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 166
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 166: processing genes 14929 - 15018
Calculating significance of each gene.
Using projection method.
14929	SPNS1	8.535591e-01
14930	SPNS2	9.749250e-01
14931	SPNS3	2.419033e-01
14932	SPO11	7.134192e-01
14933	SPOCD1	9.366379e-01
14934	SPOCK1	3.476225e-01
14935	SPOCK2	8.742786e-01
14936	SPOCK3	4.984186e-01
14937	SPON1	1.857104e-01
14938	SPON2	4.602341e-01
14939	SPOP	8.118563e-01
14940	SPOPL	1.362998e-01
14941	SPP1	1
14942	SPP2	5.217218e-02
14943	SPPL2A	2.146285e-01
14944	SPPL2B	1
14945	SPPL3	6.244115e-01
14946	SPR	1
14947	SPRED1	7.993589e-01
14948	SPRED2	1
14949	SPRED3	1
14950	SPRR1A	4.343577e-01
14951	SPRR1B	6.440771e-02
14952	SPRR2A	1
14953	SPRR2B	6.253281e-02
14954	SPRR2D	1.764266e-01
14955	SPRR2E	1.628207e-03
14956	SPRR2F	1
14957	SPRR2G	2.415365e-01
14958	SPRR3	1.288087e-05
14959	SPRR4	2.409621e-02
14960	SPRY1	8.064159e-01
14961	SPRY2	8.578697e-01
14962	SPRY3	1
14963	SPRY4	4.276505e-01
14964	SPRYD3	4.643292e-01
14965	SPRYD4	6.090980e-01
14966	SPRYD5	8.536519e-01
14967	SPSB1	6.807987e-01
14968	SPSB2	4.785182e-01
14969	SPSB3	1
14970	SPSB4	1
14971	SPTA1	9.523795e-01
14972	SPTAN1	9.999896e-01
14973	SPTB	9.998920e-01
14974	SPTBN1	9.999936e-01
14975	SPTBN2	9.998332e-01
14976	SPTBN4	9.999145e-01
14977	SPTBN5	9.999999e-01
14978	SPTLC1	9.109920e-01
14979	SPTLC2	8.620080e-01
14980	SPTLC3	1.613349e-01
14981	SPTY2D1	5.807809e-01
14982	SPZ1	6.755737e-02
14983	SQLE	1
14984	SQRDL	2.465299e-01
14985	SQSTM1	1.791993e-01
14986	SR140	3.763078e-01
14987	SRA1	2.898104e-01
14988	SRBD1	3.973204e-01
14989	SRC	9.733178e-01
14990	SRCAP	9.713867e-01
14991	SRCIN1	1
14992	SRCRB4D	8.296625e-01
14993	SRD5A1	3.997847e-01
14994	SRD5A2	9.576690e-02
14995	SRD5A3	7.495718e-01
14996	SREBF1	9.135647e-01
14997	SREBF2	9.907853e-01
14998	SRF	1
14999	SRFBP1	1
15000/18094 15000	SRGAP1	9.933103e-01
15001	SRGAP2	9.725618e-01
15002	SRGAP3	3.430318e-01
15003	SRGN	1
15004	SRI	1
15005	SRL	3.037443e-01
15006	SRM	4.658556e-01
15007	SRMS	7.874635e-01
15008	SRP14	1
15009	SRP19	6.024471e-01
15010	SRP54	6.417580e-01
15011	SRP68	9.132071e-01
15012	SRP72	9.060101e-01
15013	SRP9	1
15014	SRPK1	6.151836e-01
15015	SRPK2	5.560612e-01
15016	SRPK3	1
15017	SRPR	9.668308e-01
15018	SRPRB	6.199814e-01
Done

Running MutSig 2:
Scatter job 166: processing genes 14929 - 15018
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
Cons ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
KS ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
SPTA1   10000 perm   4 sec   (2297 perm/sec)   p_kst 2.195000e-01   p_cons 2.616000e-01   p_joint 2.035000e-01

Outputting figure to mutsig2_images.part000000000166/SPTA1.88_7468_10000_0.2195_0.2616_0.2035.png
                gene_name: SPTA1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
SRCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
Cons ci ratio: 2.452330e-02	ci left: 7.097745e-01	ci right 7.274979e-01	k: 7187	n:10000
KS ci ratio: 4.078604e-02	ci left: 4.702649e-01	ci right 4.899467e-01	k: 4801	n:10000
SRCAP   10000 perm   3 sec   (3056 perm/sec)   p_kst 4.801000e-01   p_cons 7.187000e-01   p_joint 5.644000e-01

Outputting figure to mutsig2_images.part000000000166/SRCAP.32_9821_10000_0.4801_0.7187_0.5644.png
                gene_name: SRCAP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 3 percent done.
SPRYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
Cons ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
KS ci ratio: 2.106120e-02	ci left: 7.676987e-01	ci right 7.841402e-01	k: 7760	n:10000
SPRYD5   10000 perm   2 sec   (5314 perm/sec)   p_kst 7.760000e-01   p_cons 2.263000e-01   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000166/SPRYD5.14_1383_10000_0.776_0.2263_0.488.png
                gene_name: SPRYD5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 5 percent done.
SPTAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
Cons ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
KS ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
SPTAN1   10000 perm   3 sec   (3639 perm/sec)   p_kst 1.360000e-02   p_cons 1.642000e-01   p_joint 2.650000e-02

Joint ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
Cons ci ratio: 6.326333e-02	ci left: 1.559309e-01	ci right 1.661678e-01	k: 3220	n:20000
KS ci ratio: 2.149918e-01	ci left: 1.459066e-02	ci right 1.815195e-02	k: 326	n:20000
SPTAN1   20000 perm   6 sec   (3363 perm/sec)   p_kst 1.630000e-02   p_cons 1.610000e-01   p_joint 2.230000e-02

Joint ci ratio: 1.394401e-01	ci left: 2.387437e-02	ci right 2.748495e-02	k: 769	n:30000
Cons ci ratio: 4.906006e-02	ci left: 1.711444e-01	ci right 1.797852e-01	k: 5263	n:30000
KS ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
SPTAN1   30000 perm   9 sec   (3256 perm/sec)   p_kst 1.573333e-02   p_cons 1.754333e-01   p_joint 2.563333e-02

Joint ci ratio: 1.469650e-01	ci left: 1.618942e-02	ci right 1.878130e-02	k: 698	n:40000
Cons ci ratio: 4.260766e-02	ci left: 1.709158e-01	ci right 1.783815e-01	k: 6985	n:40000
KS ci ratio: 1.549399e-01	ci left: 1.452856e-02	ci right 1.699247e-02	k: 629	n:40000
SPTAN1   40000 perm   13 sec   (3183 perm/sec)   p_kst 1.572500e-02   p_cons 1.746250e-01   p_joint 1.745000e-02

Joint ci ratio: 1.439213e-01	ci left: 1.356691e-02	ci right 1.568999e-02	k: 730	n:50000
Cons ci ratio: 3.809762e-02	ci left: 1.714006e-01	ci right 1.780773e-01	k: 8736	n:50000
KS ci ratio: 1.399891e-01	ci left: 1.435819e-02	ci right 1.653860e-02	k: 771	n:50000
SPTAN1   50000 perm   16 sec   (3100 perm/sec)   p_kst 1.542000e-02   p_cons 1.747200e-01   p_joint 1.460000e-02

Joint ci ratio: 1.307180e-01	ci left: 1.380060e-02	ci right 1.574674e-02	k: 885	n:60000
Cons ci ratio: 3.455956e-02	ci left: 1.735065e-01	ci right 1.796248e-01	k: 10593	n:60000
KS ci ratio: 1.276105e-01	ci left: 1.449444e-02	ci right 1.648616e-02	k: 928	n:60000
SPTAN1   60000 perm   20 sec   (3056 perm/sec)   p_kst 1.546667e-02   p_cons 1.765500e-01   p_joint 1.475000e-02

Joint ci ratio: 1.255797e-01	ci left: 1.286578e-02	ci right 1.460344e-02	k: 960	n:70000
Cons ci ratio: 3.200172e-02	ci left: 1.736821e-01	ci right 1.793448e-01	k: 12355	n:70000
KS ci ratio: 1.187487e-01	ci left: 1.441758e-02	ci right 1.625149e-02	k: 1072	n:70000
SPTAN1   70000 perm   23 sec   (2993 perm/sec)   p_kst 1.531429e-02   p_cons 1.765000e-01   p_joint 1.371429e-02

Joint ci ratio: 1.116487e-01	ci left: 1.432709e-02	ci right 1.603334e-02	k: 1213	n:80000
Cons ci ratio: 2.994537e-02	ci left: 1.737643e-01	ci right 1.790592e-01	k: 14112	n:80000
KS ci ratio: 1.112770e-01	ci left: 1.442434e-02	ci right 1.613608e-02	k: 1221	n:80000
SPTAN1   80000 perm   27 sec   (2955 perm/sec)   p_kst 1.526250e-02   p_cons 1.764000e-01   p_joint 1.516250e-02

Joint ci ratio: 1.140520e-01	ci left: 1.221614e-02	ci right 1.370439e-02	k: 1165	n:90000
Cons ci ratio: 2.823183e-02	ci left: 1.739258e-01	ci right 1.789173e-01	k: 15877	n:90000
KS ci ratio: 1.051365e-01	ci left: 1.441077e-02	ci right 1.602069e-02	k: 1368	n:90000
SPTAN1   90000 perm   31 sec   (2923 perm/sec)   p_kst 1.520000e-02   p_cons 1.764111e-01   p_joint 1.294444e-02

Joint ci ratio: 9.234628e-02	ci left: 1.688198e-02	ci right 1.852616e-02	k: 1769	n:100000
Cons ci ratio: 2.682483e-02	ci left: 1.736043e-01	ci right 1.783345e-01	k: 17596	n:100000
KS ci ratio: 9.967848e-02	ci left: 1.447029e-02	ci right 1.599802e-02	k: 1522	n:100000
SPTAN1   100000 perm   35 sec   (2880 perm/sec)   p_kst 1.522000e-02   p_cons 1.759600e-01   p_joint 1.769000e-02

Outputting figure to mutsig2_images.part000000000166/SPTAN1.12_7658_100000_0.01522_0.17596_0.01769.png
                gene_name: SPTAN1
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 7 percent done.
SPTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371419e-02	ci left: 8.847277e-01	ci right 8.970435e-01	k: 8910	n:10000
Cons ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
KS ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
SPTB   10000 perm   3 sec   (3753 perm/sec)   p_kst 6.584000e-01   p_cons 3.799000e-01   p_joint 8.910000e-01

Outputting figure to mutsig2_images.part000000000166/SPTB.11_7196_10000_0.6584_0.3799_0.891.png
                gene_name: SPTB
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
SPTBN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
SPTBN4   10000 perm   3 sec   (3688 perm/sec)   p_kst 5.231000e-01   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
Cons ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
KS ci ratio: 2.623458e-02	ci left: 5.205024e-01	ci right 5.343897e-01	k: 10549	n:20000
SPTBN4   20000 perm   6 sec   (3342 perm/sec)   p_kst 5.274500e-01   p_cons 5.500000e-04   p_joint 7.450000e-03

Joint ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
Cons ci ratio: 9.797223e-01	ci left: 2.798723e-04	ci right 8.245401e-04	k: 15	n:30000
KS ci ratio: 2.143742e-02	ci left: 5.213980e-01	ci right 5.327301e-01	k: 15812	n:30000
SPTBN4   30000 perm   9 sec   (3237 perm/sec)   p_kst 5.270667e-01   p_cons 5.000000e-04   p_joint 4.100000e-03

Joint ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
Cons ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
KS ci ratio: 1.862212e-02	ci left: 5.206423e-01	ci right 5.304540e-01	k: 21022	n:40000
SPTBN4   40000 perm   13 sec   (3135 perm/sec)   p_kst 5.255500e-01   p_cons 5.750000e-04   p_joint 2.575000e-03

Joint ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
Cons ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
KS ci ratio: 1.669804e-02	ci left: 5.199113e-01	ci right 5.286859e-01	k: 26215	n:50000
SPTBN4   50000 perm   16 sec   (3068 perm/sec)   p_kst 5.243000e-01   p_cons 5.600000e-04   p_joint 2.620000e-03

Joint ci ratio: 3.545362e-01	ci left: 1.673650e-03	ci right 2.409186e-03	k: 121	n:60000
Cons ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
KS ci ratio: 1.522643e-02	ci left: 5.208447e-01	ci right 5.288529e-01	k: 31491	n:60000
SPTBN4   60000 perm   20 sec   (3043 perm/sec)   p_kst 5.248500e-01   p_cons 6.166667e-04   p_joint 2.016667e-03

Joint ci ratio: 3.321574e-01	ci left: 1.656491e-03	ci right 2.328722e-03	k: 138	n:70000
Cons ci ratio: 5.907723e-01	ci left: 4.445962e-04	ci right 8.273506e-04	k: 43	n:70000
KS ci ratio: 1.412871e-02	ci left: 5.200207e-01	ci right 5.274345e-01	k: 36661	n:70000
SPTBN4   70000 perm   23 sec   (3009 perm/sec)   p_kst 5.237286e-01   p_cons 6.142857e-04   p_joint 1.971429e-03

Joint ci ratio: 3.334025e-01	ci left: 1.437945e-03	ci right 2.024139e-03	k: 137	n:80000
Cons ci ratio: 5.656300e-01	ci left: 4.317038e-04	ci right 7.811748e-04	k: 47	n:80000
KS ci ratio: 1.321831e-02	ci left: 5.201821e-01	ci right 5.271162e-01	k: 41892	n:80000
SPTBN4   80000 perm   27 sec   (2977 perm/sec)   p_kst 5.236500e-01   p_cons 5.875000e-04   p_joint 1.712500e-03

Joint ci ratio: 2.030952e-01	ci left: 3.703572e-03	ci right 4.551102e-03	k: 370	n:90000
Cons ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
KS ci ratio: 1.244947e-02	ci left: 5.208976e-01	ci right 5.274342e-01	k: 47175	n:90000
SPTBN4   90000 perm   31 sec   (2928 perm/sec)   p_kst 5.241667e-01   p_cons 6.111111e-04   p_joint 4.111111e-03

Joint ci ratio: 2.036892e-01	ci left: 3.314164e-03	ci right 4.075070e-03	k: 368	n:100000
Cons ci ratio: 4.976837e-01	ci left: 4.666328e-04	ci right 7.835025e-04	k: 61	n:100000
KS ci ratio: 1.207532e-02	ci left: 5.099967e-01	ci right 5.162025e-01	k: 51310	n:100000
SPTBN4   100000 perm   35 sec   (2891 perm/sec)   p_kst 5.131000e-01   p_cons 6.100000e-04   p_joint 3.680000e-03

Joint ci ratio: 1.976359e-01	ci left: 3.211446e-03	ci right 3.924214e-03	k: 391	n:110000
Cons ci ratio: 4.898552e-01	ci left: 4.401266e-04	ci right 7.327083e-04	k: 63	n:110000
KS ci ratio: 1.151569e-02	ci left: 5.100414e-01	ci right 5.159579e-01	k: 56430	n:110000
SPTBN4   110000 perm   38 sec   (2859 perm/sec)   p_kst 5.130000e-01   p_cons 5.727273e-04   p_joint 3.554545e-03

Joint ci ratio: 1.979189e-01	ci left: 2.935862e-03	ci right 3.588508e-03	k: 390	n:120000
Cons ci ratio: 4.683910e-01	ci left: 4.474110e-04	ci right 7.276437e-04	k: 69	n:120000
KS ci ratio: 1.102452e-02	ci left: 5.102092e-01	ci right 5.158735e-01	k: 61565	n:120000
SPTBN4   120000 perm   42 sec   (2826 perm/sec)   p_kst 5.130417e-01   p_cons 5.750000e-04   p_joint 3.250000e-03

Joint ci ratio: 1.532512e-01	ci left: 4.623811e-03	ci right 5.398522e-03	k: 650	n:130000
Cons ci ratio: 4.555593e-01	ci left: 4.401815e-04	ci right 7.059993e-04	k: 73	n:130000
KS ci ratio: 1.092851e-02	ci left: 4.946860e-01	ci right 5.001295e-01	k: 64663	n:130000
SPTBN4   130000 perm   46 sec   (2798 perm/sec)   p_kst 4.974077e-01   p_cons 5.615385e-04   p_joint 5.000000e-03

Joint ci ratio: 1.583694e-01	ci left: 4.011995e-03	ci right 4.708778e-03	k: 609	n:140000
Cons ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
KS ci ratio: 1.052874e-02	ci left: 4.948917e-01	ci right 5.001370e-01	k: 69652	n:140000
SPTBN4   140000 perm   50 sec   (2773 perm/sec)   p_kst 4.975143e-01   p_cons 5.428571e-04   p_joint 4.350000e-03

Joint ci ratio: 1.597124e-01	ci left: 3.680465e-03	ci right 4.325607e-03	k: 599	n:150000
Cons ci ratio: 4.327718e-01	ci left: 4.288604e-04	ci right 6.711267e-04	k: 81	n:150000
KS ci ratio: 1.016823e-02	ci left: 4.951531e-01	ci right 5.002203e-01	k: 74653	n:150000
SPTBN4   150000 perm   55 sec   (2752 perm/sec)   p_kst 4.976867e-01   p_cons 5.400000e-04   p_joint 3.993333e-03

Joint ci ratio: 1.563674e-01	ci left: 3.606498e-03	ci right 4.224192e-03	k: 625	n:160000
Cons ci ratio: 4.225895e-01	ci left: 4.243650e-04	ci right 6.568576e-04	k: 85	n:160000
KS ci ratio: 9.844968e-03	ci left: 4.952533e-01	ci right 5.001593e-01	k: 79633	n:160000
SPTBN4   160000 perm   59 sec   (2729 perm/sec)   p_kst 4.977063e-01   p_cons 5.312500e-04   p_joint 3.906250e-03

Joint ci ratio: 1.555152e-01	ci left: 3.433897e-03	ci right 4.018523e-03	k: 632	n:170000
Cons ci ratio: 4.042041e-01	ci left: 4.415691e-04	ci right 6.701428e-04	k: 93	n:170000
KS ci ratio: 9.559803e-03	ci left: 4.948674e-01	ci right 4.996268e-01	k: 84532	n:170000
SPTBN4   170000 perm   63 sec   (2699 perm/sec)   p_kst 4.972471e-01   p_cons 5.470588e-04   p_joint 3.717647e-03

Joint ci ratio: 1.518442e-01	ci left: 3.408721e-03	ci right 3.974116e-03	k: 663	n:180000
Cons ci ratio: 3.880268e-01	ci left: 4.570567e-04	ci right 6.817597e-04	k: 101	n:180000
KS ci ratio: 9.299187e-03	ci left: 4.944653e-01	ci right 4.990904e-01	k: 89420	n:180000
SPTBN4   180000 perm   67 sec   (2671 perm/sec)   p_kst 4.967778e-01   p_cons 5.611111e-04   p_joint 3.683333e-03

Joint ci ratio: 1.592484e-01	ci left: 2.925751e-03	ci right 3.436962e-03	k: 603	n:190000
Cons ci ratio: 3.788530e-01	ci left: 4.567804e-04	ci right 6.747182e-04	k: 106	n:190000
KS ci ratio: 8.710079e-03	ci left: 5.137290e-01	ci right 5.182284e-01	k: 98036	n:190000
SPTBN4   190000 perm   72 sec   (2647 perm/sec)   p_kst 5.159789e-01   p_cons 5.578947e-04   p_joint 3.173684e-03

Joint ci ratio: 1.632397e-01	ci left: 2.640281e-03	ci right 3.114309e-03	k: 574	n:200000
Cons ci ratio: 3.670361e-01	ci left: 4.656619e-04	ci right 6.792470e-04	k: 113	n:200000
KS ci ratio: 8.487736e-03	ci left: 5.138921e-01	ci right 5.182774e-01	k: 103217	n:200000
SPTBN4   200000 perm   76 sec   (2617 perm/sec)   p_kst 5.160850e-01   p_cons 5.650000e-04   p_joint 2.870000e-03

Joint ci ratio: 1.610198e-01	ci left: 2.587647e-03	ci right 3.045296e-03	k: 590	n:210000
Cons ci ratio: 3.638615e-01	ci left: 4.521362e-04	ci right 6.572977e-04	k: 115	n:210000
KS ci ratio: 8.280805e-03	ci left: 5.140886e-01	ci right 5.183681e-01	k: 108408	n:210000
SPTBN4   210000 perm   81 sec   (2594 perm/sec)   p_kst 5.162286e-01   p_cons 5.476190e-04   p_joint 2.809524e-03

Joint ci ratio: 1.573359e-01	ci left: 2.592230e-03	ci right 3.039211e-03	k: 618	n:220000
Cons ci ratio: 3.592478e-01	ci left: 4.439819e-04	ci right 6.422911e-04	k: 118	n:220000
KS ci ratio: 8.085434e-03	ci left: 5.144457e-01	ci right 5.186266e-01	k: 113638	n:220000
SPTBN4   220000 perm   86 sec   (2570 perm/sec)   p_kst 5.165364e-01   p_cons 5.363636e-04   p_joint 2.809091e-03

Joint ci ratio: 1.557145e-01	ci left: 2.533826e-03	ci right 2.965813e-03	k: 631	n:230000
Cons ci ratio: 3.519307e-01	ci left: 4.444757e-04	ci right 6.380384e-04	k: 123	n:230000
KS ci ratio: 8.104493e-03	ci left: 5.022066e-01	ci right 5.062976e-01	k: 115978	n:230000
SPTBN4   230000 perm   90 sec   (2549 perm/sec)   p_kst 5.042522e-01   p_cons 5.347826e-04   p_joint 2.743478e-03

Joint ci ratio: 1.530748e-01	ci left: 2.516374e-03	ci right 2.937445e-03	k: 653	n:240000
Cons ci ratio: 3.450433e-01	ci left: 4.449660e-04	ci right 6.341031e-04	k: 128	n:240000
KS ci ratio: 7.938123e-03	ci left: 5.019809e-01	ci right 5.059857e-01	k: 120956	n:240000
SPTBN4   240000 perm   95 sec   (2526 perm/sec)   p_kst 5.039833e-01   p_cons 5.333333e-04   p_joint 2.720833e-03

Joint ci ratio: 1.521530e-01	ci left: 2.446490e-03	ci right 2.853177e-03	k: 661	n:250000
Cons ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
KS ci ratio: 7.776114e-03	ci left: 5.021261e-01	ci right 5.060498e-01	k: 126022	n:250000
SPTBN4   250000 perm   100 sec   (2503 perm/sec)   p_kst 5.040880e-01   p_cons 5.320000e-04   p_joint 2.644000e-03

Joint ci ratio: 1.519308e-01	ci left: 2.359786e-03	ci right 2.751434e-03	k: 663	n:260000
Cons ci ratio: 3.324005e-01	ci left: 4.459293e-04	ci right 6.270457e-04	k: 138	n:260000
KS ci ratio: 7.627683e-03	ci left: 5.019954e-01	ci right 5.058429e-01	k: 131019	n:260000
SPTBN4   260000 perm   105 sec   (2476 perm/sec)   p_kst 5.039192e-01   p_cons 5.307692e-04   p_joint 2.550000e-03

Joint ci ratio: 1.546465e-01	ci left: 2.190453e-03	ci right 2.561098e-03	k: 640	n:270000
Cons ci ratio: 3.265789e-01	ci left: 4.464003e-04	ci right 6.238667e-04	k: 143	n:270000
KS ci ratio: 7.482227e-03	ci left: 5.022233e-01	ci right 5.059988e-01	k: 136110	n:270000
SPTBN4   270000 perm   110 sec   (2456 perm/sec)   p_kst 5.041111e-01   p_cons 5.296296e-04   p_joint 2.370370e-03

Joint ci ratio: 1.528706e-01	ci left: 2.163731e-03	ci right 2.525264e-03	k: 655	n:280000
Cons ci ratio: 3.199803e-01	ci left: 4.501475e-04	ci right 6.247469e-04	k: 149	n:280000
KS ci ratio: 7.347775e-03	ci left: 5.022320e-01	ci right 5.059394e-01	k: 141144	n:280000
SPTBN4   280000 perm   115 sec   (2436 perm/sec)   p_kst 5.040857e-01   p_cons 5.321429e-04   p_joint 2.339286e-03

Joint ci ratio: 1.630290e-01	ci left: 1.827435e-03	ci right 2.155059e-03	k: 576	n:290000
Cons ci ratio: 2.850446e-01	ci left: 5.589400e-04	ci right 7.478226e-04	k: 188	n:290000
KS ci ratio: 7.217831e-03	ci left: 5.024130e-01	ci right 5.060559e-01	k: 146228	n:290000
SPTBN4   290000 perm   120 sec   (2417 perm/sec)   p_kst 5.042345e-01   p_cons 6.482759e-04   p_joint 1.986207e-03

Joint ci ratio: 1.643235e-01	ci left: 1.737743e-03	ci right 2.052004e-03	k: 567	n:300000
Cons ci ratio: 2.799081e-01	ci left: 5.619895e-04	ci right 7.478768e-04	k: 195	n:300000
KS ci ratio: 7.098567e-03	ci left: 5.022992e-01	ci right 5.058808e-01	k: 151227	n:300000
SPTBN4   300000 perm   125 sec   (2397 perm/sec)   p_kst 5.040900e-01   p_cons 6.500000e-04   p_joint 1.890000e-03

Joint ci ratio: 1.623364e-01	ci left: 1.725001e-03	ci right 2.032817e-03	k: 581	n:310000
Cons ci ratio: 2.750395e-01	ci left: 5.648706e-04	ci right 7.478993e-04	k: 202	n:310000
KS ci ratio: 6.983042e-03	ci left: 5.023351e-01	ci right 5.058584e-01	k: 156270	n:310000
SPTBN4   310000 perm   130 sec   (2378 perm/sec)   p_kst 5.040968e-01   p_cons 6.516129e-04   p_joint 1.874194e-03

Joint ci ratio: 1.608256e-01	ci left: 1.704078e-03	ci right 2.005058e-03	k: 592	n:320000
Cons ci ratio: 2.704165e-01	ci left: 5.675979e-04	ci right 7.478944e-04	k: 209	n:320000
KS ci ratio: 6.871863e-03	ci left: 5.024505e-01	ci right 5.059182e-01	k: 161339	n:320000
SPTBN4   320000 perm   136 sec   (2355 perm/sec)   p_kst 5.041844e-01   p_cons 6.531250e-04   p_joint 1.850000e-03

Joint ci ratio: 1.584391e-01	ci left: 1.704806e-03	ci right 2.001021e-03	k: 610	n:330000
Cons ci ratio: 2.691398e-01	ci left: 5.560482e-04	ci right 7.317012e-04	k: 211	n:330000
KS ci ratio: 6.768127e-03	ci left: 5.023896e-01	ci right 5.058043e-01	k: 166352	n:330000
SPTBN4   330000 perm   141 sec   (2335 perm/sec)   p_kst 5.040970e-01   p_cons 6.393939e-04   p_joint 1.848485e-03

Joint ci ratio: 1.557840e-01	ci left: 1.714002e-03	ci right 2.006357e-03	k: 631	n:340000
Cons ci ratio: 2.648033e-01	ci left: 5.589044e-04	ci right 7.321433e-04	k: 218	n:340000
KS ci ratio: 6.666519e-03	ci left: 5.025150e-01	ci right 5.058791e-01	k: 171427	n:340000
SPTBN4   340000 perm   147 sec   (2311 perm/sec)   p_kst 5.041971e-01   p_cons 6.411765e-04   p_joint 1.855882e-03

Joint ci ratio: 1.551744e-01	ci left: 1.678758e-03	ci right 1.963877e-03	k: 636	n:350000
Cons ci ratio: 2.618318e-01	ci left: 5.562784e-04	ci right 7.264516e-04	k: 223	n:350000
KS ci ratio: 6.574762e-03	ci left: 5.022221e-01	ci right 5.055378e-01	k: 176358	n:350000
SPTBN4   350000 perm   153 sec   (2288 perm/sec)   p_kst 5.038800e-01   p_cons 6.371429e-04   p_joint 1.817143e-03

Joint ci ratio: 1.533798e-01	ci left: 1.672184e-03	ci right 1.952600e-03	k: 651	n:360000
Cons ci ratio: 2.572773e-01	ci left: 5.616031e-04	ci right 7.299368e-04	k: 231	n:360000
KS ci ratio: 6.484561e-03	ci left: 5.021098e-01	ci right 5.053791e-01	k: 181348	n:360000
SPTBN4   360000 perm   159 sec   (2269 perm/sec)   p_kst 5.037444e-01   p_cons 6.416667e-04   p_joint 1.808333e-03

Joint ci ratio: 1.349381e-01	ci left: 2.122087e-03	ci right 2.431736e-03	k: 841	n:370000
Cons ci ratio: 2.540138e-01	ci left: 5.616019e-04	ci right 7.274618e-04	k: 237	n:370000
KS ci ratio: 6.395068e-03	ci left: 5.022308e-01	ci right 5.054556e-01	k: 186422	n:370000
SPTBN4   370000 perm   164 sec   (2251 perm/sec)   p_kst 5.038432e-01   p_cons 6.405405e-04   p_joint 2.272973e-03

Joint ci ratio: 1.339101e-01	ci left: 2.099301e-03	ci right 2.403105e-03	k: 854	n:380000
Cons ci ratio: 2.529547e-01	ci left: 5.517513e-04	ci right 7.139155e-04	k: 239	n:380000
KS ci ratio: 6.310543e-03	ci left: 5.022379e-01	ci right 5.054199e-01	k: 191455	n:380000
SPTBN4   380000 perm   170 sec   (2233 perm/sec)   p_kst 5.038289e-01   p_cons 6.289474e-04   p_joint 2.247368e-03

Joint ci ratio: 1.343081e-01	ci left: 2.033078e-03	ci right 2.328243e-03	k: 849	n:390000
Cons ci ratio: 2.488408e-01	ci left: 5.568272e-04	ci right 7.174096e-04	k: 247	n:390000
KS ci ratio: 6.227781e-03	ci left: 5.023654e-01	ci right 5.055063e-01	k: 196535	n:390000
SPTBN4   390000 perm   176 sec   (2215 perm/sec)   p_kst 5.039359e-01   p_cons 6.333333e-04   p_joint 2.176923e-03

Joint ci ratio: 1.324509e-01	ci left: 2.040249e-03	ci right 2.332037e-03	k: 873	n:400000
Cons ci ratio: 2.463700e-01	ci left: 5.546308e-04	ci right 7.127485e-04	k: 252	n:400000
KS ci ratio: 6.149084e-03	ci left: 5.024143e-01	ci right 5.055157e-01	k: 201586	n:400000
SPTBN4   400000 perm   182 sec   (2196 perm/sec)   p_kst 5.039650e-01   p_cons 6.300000e-04   p_joint 2.182500e-03

Joint ci ratio: 1.351947e-01	ci left: 1.907970e-03	ci right 2.186947e-03	k: 838	n:410000
Cons ci ratio: 2.449232e-01	ci left: 5.479697e-04	ci right 7.031314e-04	k: 255	n:410000
KS ci ratio: 6.075756e-03	ci left: 5.022586e-01	ci right 5.053219e-01	k: 206554	n:410000
SPTBN4   410000 perm   188 sec   (2177 perm/sec)   p_kst 5.037902e-01   p_cons 6.219512e-04   p_joint 2.043902e-03

Joint ci ratio: 1.336897e-01	ci left: 1.906259e-03	ci right 2.181636e-03	k: 857	n:420000
Cons ci ratio: 2.425662e-01	ci left: 5.461004e-04	ci right 6.990207e-04	k: 260	n:420000
KS ci ratio: 6.003016e-03	ci left: 5.022748e-01	ci right 5.053014e-01	k: 211591	n:420000
SPTBN4   420000 perm   195 sec   (2156 perm/sec)   p_kst 5.037881e-01   p_cons 6.190476e-04   p_joint 2.040476e-03

Joint ci ratio: 1.329957e-01	ci left: 1.882158e-03	ci right 2.152530e-03	k: 866	n:430000
Cons ci ratio: 2.380477e-01	ci left: 5.552564e-04	ci right 7.074173e-04	k: 270	n:430000
KS ci ratio: 5.933490e-03	ci left: 5.022346e-01	ci right 5.052258e-01	k: 216604	n:430000
SPTBN4   430000 perm   201 sec   (2136 perm/sec)   p_kst 5.037302e-01   p_cons 6.279070e-04   p_joint 2.013953e-03

Joint ci ratio: 1.314878e-01	ci left: 1.883332e-03	ci right 2.150566e-03	k: 886	n:440000
Cons ci ratio: 2.346096e-01	ci left: 5.597425e-04	ci right 7.105958e-04	k: 278	n:440000
KS ci ratio: 5.865205e-03	ci left: 5.022920e-01	ci right 5.052489e-01	k: 221659	n:440000
SPTBN4   440000 perm   208 sec   (2118 perm/sec)   p_kst 5.037705e-01   p_cons 6.318182e-04   p_joint 2.013636e-03

Joint ci ratio: 1.296012e-01	ci left: 1.897372e-03	ci right 2.162438e-03	k: 912	n:450000
Cons ci ratio: 2.313162e-01	ci left: 5.640442e-04	ci right 7.136181e-04	k: 286	n:450000
KS ci ratio: 5.801030e-03	ci left: 5.021914e-01	ci right 5.051152e-01	k: 226644	n:450000
SPTBN4   450000 perm   214 sec   (2101 perm/sec)   p_kst 5.036533e-01   p_cons 6.355556e-04   p_joint 2.026667e-03

Joint ci ratio: 1.282736e-01	ci left: 1.896097e-03	ci right 2.158065e-03	k: 931	n:460000
Cons ci ratio: 2.273878e-01	ci left: 5.722728e-04	ci right 7.210902e-04	k: 296	n:460000
KS ci ratio: 5.737268e-03	ci left: 5.022388e-01	ci right 5.051307e-01	k: 231695	n:460000
SPTBN4   460000 perm   221 sec   (2082 perm/sec)   p_kst 5.036848e-01   p_cons 6.434783e-04   p_joint 2.023913e-03

Joint ci ratio: 1.194777e-01	ci left: 2.148548e-03	ci right 2.423603e-03	k: 1073	n:470000
Cons ci ratio: 2.258724e-01	ci left: 5.681242e-04	ci right 7.147410e-04	k: 300	n:470000
KS ci ratio: 5.674115e-03	ci left: 5.024121e-01	ci right 5.052730e-01	k: 236806	n:470000
SPTBN4   470000 perm   228 sec   (2066 perm/sec)   p_kst 5.038426e-01   p_cons 6.382979e-04   p_joint 2.282979e-03

Joint ci ratio: 1.181106e-01	ci left: 2.154322e-03	ci right 2.426741e-03	k: 1098	n:480000
Cons ci ratio: 2.232908e-01	ci left: 5.700513e-04	ci right 7.152529e-04	k: 307	n:480000
KS ci ratio: 5.615364e-03	ci left: 5.023678e-01	ci right 5.051988e-01	k: 241816	n:480000
SPTBN4   480000 perm   234 sec   (2048 perm/sec)   p_kst 5.037833e-01   p_cons 6.395833e-04   p_joint 2.287500e-03

Joint ci ratio: 1.298259e-01	ci left: 1.736551e-03	ci right 1.979603e-03	k: 909	n:490000
Cons ci ratio: 2.508895e-01	ci left: 4.355333e-04	ci right 5.623313e-04	k: 243	n:490000
KS ci ratio: 5.556631e-03	ci left: 5.024847e-01	ci right 5.052866e-01	k: 246904	n:490000
SPTBN4   490000 perm   241 sec   (2034 perm/sec)   p_kst 5.038857e-01   p_cons 4.959184e-04   p_joint 1.855102e-03

Joint ci ratio: 1.192635e-01	ci left: 2.027388e-03	ci right 2.286435e-03	k: 1077	n:500000
Cons ci ratio: 2.478603e-01	ci left: 4.380728e-04	ci right 5.638330e-04	k: 249	n:500000
KS ci ratio: 5.500143e-03	ci left: 5.025571e-01	ci right 5.053308e-01	k: 251972	n:500000
SPTBN4   500000 perm   247 sec   (2020 perm/sec)   p_kst 5.039440e-01   p_cons 4.980000e-04   p_joint 2.154000e-03

Joint ci ratio: 1.039544e-01	ci left: 2.635818e-03	ci right 2.926739e-03	k: 1417	n:510000
Cons ci ratio: 2.449383e-01	ci left: 4.405216e-04	ci right 5.652670e-04	k: 255	n:510000
KS ci ratio: 5.446668e-03	ci left: 5.025052e-01	ci right 5.052516e-01	k: 256978	n:510000
SPTBN4   510000 perm   254 sec   (2007 perm/sec)   p_kst 5.038784e-01   p_cons 5.000000e-04   p_joint 2.778431e-03

Joint ci ratio: 1.027295e-01	ci left: 2.648825e-03	ci right 2.937528e-03	k: 1451	n:520000
Cons ci ratio: 2.407421e-01	ci left: 4.483049e-04	ci right 5.727549e-04	k: 264	n:520000
KS ci ratio: 5.393457e-03	ci left: 5.025728e-01	ci right 5.052926e-01	k: 262045	n:520000
SPTBN4   520000 perm   261 sec   (1993 perm/sec)   p_kst 5.039327e-01   p_cons 5.076923e-04   p_joint 2.790385e-03

Joint ci ratio: 1.017186e-01	ci left: 2.652166e-03	ci right 2.938218e-03	k: 1480	n:530000
Cons ci ratio: 2.380619e-01	ci left: 4.504881e-04	ci right 5.739467e-04	k: 270	n:530000
KS ci ratio: 5.341614e-03	ci left: 5.026530e-01	ci right 5.053470e-01	k: 267120	n:530000
SPTBN4   530000 perm   268 sec   (1979 perm/sec)   p_kst 5.040000e-01   p_cons 5.094340e-04   p_joint 2.792453e-03

Joint ci ratio: 1.018939e-01	ci left: 2.594024e-03	ci right 2.874316e-03	k: 1475	n:540000
Cons ci ratio: 2.350452e-01	ci left: 4.543405e-04	ci right 5.770477e-04	k: 277	n:540000
KS ci ratio: 5.291904e-03	ci left: 5.026674e-01	ci right 5.053363e-01	k: 272161	n:540000
SPTBN4   540000 perm   275 sec   (1965 perm/sec)   p_kst 5.040019e-01   p_cons 5.129630e-04   p_joint 2.731481e-03

Joint ci ratio: 1.007062e-01	ci left: 2.608885e-03	ci right 2.887303e-03	k: 1510	n:550000
Cons ci ratio: 2.333725e-01	ci left: 4.529258e-04	ci right 5.742547e-04	k: 281	n:550000
KS ci ratio: 5.244434e-03	ci left: 5.025977e-01	ci right 5.052423e-01	k: 277156	n:550000
SPTBN4   550000 perm   282 sec   (1952 perm/sec)   p_kst 5.039200e-01   p_cons 5.109091e-04   p_joint 2.745455e-03

Joint ci ratio: 9.975332e-02	ci left: 2.612786e-03	ci right 2.888827e-03	k: 1539	n:560000
Cons ci ratio: 2.309286e-01	ci left: 4.549291e-04	ci right 5.753363e-04	k: 287	n:560000
KS ci ratio: 5.198107e-03	ci left: 5.025414e-01	ci right 5.051622e-01	k: 282157	n:560000
SPTBN4   560000 perm   289 sec   (1938 perm/sec)   p_kst 5.038518e-01   p_cons 5.125000e-04   p_joint 2.748214e-03

Joint ci ratio: 9.807766e-02	ci left: 2.657632e-03	ci right 2.933425e-03	k: 1592	n:570000
Cons ci ratio: 2.106763e-01	ci left: 5.430892e-04	ci right 6.726004e-04	k: 345	n:570000
KS ci ratio: 5.152697e-03	ci left: 5.025152e-01	ci right 5.051129e-01	k: 287174	n:570000
SPTBN4   570000 perm   296 sec   (1924 perm/sec)   p_kst 5.038140e-01   p_cons 6.052632e-04   p_joint 2.792982e-03

Joint ci ratio: 9.789533e-02	ci left: 2.621900e-03	ci right 2.893449e-03	k: 1598	n:580000
Cons ci ratio: 2.088731e-01	ci left: 5.435270e-04	ci right 6.718913e-04	k: 351	n:580000
KS ci ratio: 5.107752e-03	ci left: 5.025589e-01	ci right 5.051341e-01	k: 292231	n:580000
SPTBN4   580000 perm   304 sec   (1910 perm/sec)   p_kst 5.038466e-01   p_cons 6.051724e-04   p_joint 2.755172e-03

Joint ci ratio: 9.762253e-02	ci left: 2.592341e-03	ci right 2.860037e-03	k: 1607	n:590000
Cons ci ratio: 2.062525e-01	ci left: 5.487763e-04	ci right 6.765491e-04	k: 360	n:590000
KS ci ratio: 5.063517e-03	ci left: 5.026454e-01	ci right 5.051986e-01	k: 297314	n:590000
SPTBN4   590000 perm   311 sec   (1896 perm/sec)   p_kst 5.039220e-01   p_cons 6.101695e-04   p_joint 2.723729e-03

Joint ci ratio: 9.708143e-02	ci left: 2.578404e-03	ci right 2.843101e-03	k: 1625	n:600000
Cons ci ratio: 2.048390e-01	ci left: 5.475344e-04	ci right 6.740350e-04	k: 365	n:600000
KS ci ratio: 5.021315e-03	ci left: 5.026390e-01	ci right 5.051709e-01	k: 302343	n:600000
SPTBN4   600000 perm   319 sec   (1883 perm/sec)   p_kst 5.039050e-01   p_cons 6.083333e-04   p_joint 2.708333e-03

Joint ci ratio: 9.839681e-02	ci left: 2.467359e-03	ci right 2.724287e-03	k: 1582	n:610000
Cons ci ratio: 2.029077e-01	ci left: 5.494481e-04	ci right 6.750456e-04	k: 372	n:610000
KS ci ratio: 4.980526e-03	ci left: 5.025953e-01	ci right 5.051063e-01	k: 307349	n:610000
SPTBN4   610000 perm   326 sec   (1869 perm/sec)   p_kst 5.038508e-01   p_cons 6.098361e-04   p_joint 2.593443e-03

Joint ci ratio: 1.003894e-01	ci left: 2.330040e-03	ci right 2.577871e-03	k: 1520	n:620000
Cons ci ratio: 2.018287e-01	ci left: 5.467106e-04	ci right 6.709360e-04	k: 376	n:620000
KS ci ratio: 4.940126e-03	ci left: 5.026127e-01	ci right 5.051034e-01	k: 312392	n:620000
SPTBN4   620000 perm   334 sec   (1855 perm/sec)   p_kst 5.038581e-01   p_cons 6.064516e-04   p_joint 2.451613e-03

Joint ci ratio: 9.954208e-02	ci left: 2.333294e-03	ci right 2.579254e-03	k: 1546	n:630000
Cons ci ratio: 2.007668e-01	ci left: 5.440618e-04	ci right 6.669551e-04	k: 380	n:630000
KS ci ratio: 4.901176e-03	ci left: 5.025804e-01	ci right 5.050513e-01	k: 317404	n:630000
SPTBN4   630000 perm   342 sec   (1842 perm/sec)   p_kst 5.038159e-01   p_cons 6.031746e-04   p_joint 2.453968e-03

Joint ci ratio: 9.893680e-02	ci left: 2.325786e-03	ci right 2.569378e-03	k: 1565	n:640000
Cons ci ratio: 1.989474e-01	ci left: 5.459511e-04	ci right 6.680180e-04	k: 387	n:640000
KS ci ratio: 4.863938e-03	ci left: 5.024664e-01	ci right 5.049179e-01	k: 322363	n:640000
SPTBN4   640000 perm   350 sec   (1828 perm/sec)   p_kst 5.036922e-01   p_cons 6.046875e-04   p_joint 2.445313e-03

Joint ci ratio: 1.000332e-01	ci left: 2.238993e-03	ci right 2.476246e-03	k: 1531	n:650000
Cons ci ratio: 1.966789e-01	ci left: 5.507124e-04	ci right 6.722717e-04	k: 396	n:650000
KS ci ratio: 4.826808e-03	ci left: 5.024314e-01	ci right 5.048639e-01	k: 327371	n:650000
SPTBN4   650000 perm   358 sec   (1815 perm/sec)   p_kst 5.036477e-01   p_cons 6.092308e-04   p_joint 2.355385e-03

Joint ci ratio: 9.903561e-02	ci left: 2.250870e-03	ci right 2.486865e-03	k: 1562	n:660000
Cons ci ratio: 1.954521e-01	ci left: 5.495721e-04	ci right 6.700330e-04	k: 401	n:660000
KS ci ratio: 4.789775e-03	ci left: 5.024748e-01	ci right 5.048888e-01	k: 332430	n:660000
SPTBN4   660000 perm   366 sec   (1803 perm/sec)   p_kst 5.036818e-01   p_cons 6.075758e-04   p_joint 2.366667e-03

Joint ci ratio: 1.001350e-01	ci left: 2.167788e-03	ci right 2.397743e-03	k: 1528	n:670000
Cons ci ratio: 1.942480e-01	ci left: 5.484681e-04	ci right 6.678588e-04	k: 406	n:670000
KS ci ratio: 4.755398e-03	ci left: 5.023259e-01	ci right 5.047218e-01	k: 337361	n:670000
SPTBN4   670000 perm   374 sec   (1791 perm/sec)   p_kst 5.035239e-01   p_cons 6.059701e-04   p_joint 2.280597e-03

Joint ci ratio: 9.977760e-02	ci left: 2.151680e-03	ci right 2.379064e-03	k: 1539	n:680000
Cons ci ratio: 1.933008e-01	ci left: 5.459993e-04	ci right 6.642048e-04	k: 410	n:680000
KS ci ratio: 4.720319e-03	ci left: 5.023329e-01	ci right 5.047112e-01	k: 342395	n:680000
SPTBN4   680000 perm   382 sec   (1779 perm/sec)   p_kst 5.035221e-01   p_cons 6.029412e-04   p_joint 2.263235e-03

Joint ci ratio: 9.932776e-02	ci left: 2.140281e-03	ci right 2.365380e-03	k: 1553	n:690000
Cons ci ratio: 1.916752e-01	ci left: 5.477424e-04	ci right 6.652118e-04	k: 417	n:690000
KS ci ratio: 4.686332e-03	ci left: 5.023050e-01	ci right 5.046659e-01	k: 347405	n:690000
SPTBN4   690000 perm   391 sec   (1767 perm/sec)   p_kst 5.034855e-01   p_cons 6.043478e-04   p_joint 2.250725e-03

Joint ci ratio: 9.831994e-02	ci left: 2.154290e-03	ci right 2.378432e-03	k: 1585	n:700000
Cons ci ratio: 1.903142e-01	ci left: 5.480791e-04	ci right 6.646896e-04	k: 423	n:700000
KS ci ratio: 4.652789e-03	ci left: 5.023080e-01	ci right 5.046520e-01	k: 352436	n:700000
SPTBN4   700000 perm   399 sec   (1756 perm/sec)   p_kst 5.034800e-01   p_cons 6.042857e-04   p_joint 2.264286e-03

Joint ci ratio: 8.739889e-02	ci left: 2.701838e-03	ci right 2.950133e-03	k: 2005	n:710000
Cons ci ratio: 1.887623e-01	ci left: 5.497510e-04	ci right 6.656541e-04	k: 430	n:710000
KS ci ratio: 4.619931e-03	ci left: 5.023138e-01	ci right 5.046411e-01	k: 357469	n:710000
SPTBN4   710000 perm   407 sec   (1745 perm/sec)   p_kst 5.034775e-01   p_cons 6.056338e-04   p_joint 2.823944e-03

Joint ci ratio: 8.688097e-02	ci left: 2.696919e-03	ci right 2.943219e-03	k: 2029	n:720000
Cons ci ratio: 1.876770e-01	ci left: 5.487328e-04	ci right 6.636803e-04	k: 435	n:720000
KS ci ratio: 4.588090e-03	ci left: 5.022833e-01	ci right 5.045945e-01	k: 362476	n:720000
SPTBN4   720000 perm   415 sec   (1735 perm/sec)   p_kst 5.034389e-01   p_cons 6.041667e-04   p_joint 2.818056e-03

Joint ci ratio: 7.961913e-02	ci left: 3.177785e-03	ci right 3.442619e-03	k: 2415	n:730000
Cons ci ratio: 1.855605e-01	ci left: 5.542748e-04	ci right 6.689264e-04	k: 445	n:730000
KS ci ratio: 4.557572e-03	ci left: 5.021797e-01	ci right 5.044750e-01	k: 367429	n:730000
SPTBN4   730000 perm   424 sec   (1723 perm/sec)   p_kst 5.033274e-01   p_cons 6.095890e-04   p_joint 3.308219e-03

Joint ci ratio: 7.906470e-02	ci left: 3.179876e-03	ci right 3.442955e-03	k: 2449	n:740000
Cons ci ratio: 1.847343e-01	ci left: 5.519394e-04	ci right 6.655426e-04	k: 449	n:740000
KS ci ratio: 4.525992e-03	ci left: 5.022628e-01	ci right 5.045425e-01	k: 372518	n:740000
SPTBN4   740000 perm   432 sec   (1713 perm/sec)   p_kst 5.034027e-01   p_cons 6.067568e-04   p_joint 3.309459e-03

Joint ci ratio: 7.864885e-02	ci left: 3.171460e-03	ci right 3.432399e-03	k: 2475	n:750000
Cons ci ratio: 1.843256e-01	ci left: 5.471236e-04	ci right 6.594586e-04	k: 451	n:750000
KS ci ratio: 4.494878e-03	ci left: 5.023638e-01	ci right 5.046282e-01	k: 377622	n:750000
SPTBN4   750000 perm   441 sec   (1702 perm/sec)   p_kst 5.034960e-01   p_cons 6.013333e-04   p_joint 3.300000e-03

Joint ci ratio: 7.814555e-02	ci left: 3.171010e-03	ci right 3.430167e-03	k: 2507	n:760000
Cons ci ratio: 1.839196e-01	ci left: 5.424347e-04	ci right 6.535344e-04	k: 453	n:760000
KS ci ratio: 4.464656e-03	ci left: 5.024331e-01	ci right 5.046826e-01	k: 382704	n:760000
SPTBN4   760000 perm   449 sec   (1692 perm/sec)   p_kst 5.035579e-01   p_cons 5.960526e-04   p_joint 3.298684e-03

Joint ci ratio: 7.831973e-02	ci left: 3.115819e-03	ci right 3.371058e-03	k: 2496	n:770000
Cons ci ratio: 1.827162e-01	ci left: 5.428248e-04	ci right 6.531963e-04	k: 459	n:770000
KS ci ratio: 4.434978e-03	ci left: 5.025073e-01	ci right 5.047421e-01	k: 387791	n:770000
SPTBN4   770000 perm   458 sec   (1682 perm/sec)   p_kst 5.036247e-01   p_cons 5.961039e-04   p_joint 3.241558e-03

Joint ci ratio: 7.824282e-02	ci left: 3.082155e-03	ci right 3.334377e-03	k: 2501	n:780000
Cons ci ratio: 1.825185e-01	ci left: 5.370888e-04	ci right 6.461628e-04	k: 460	n:780000
KS ci ratio: 4.407273e-03	ci left: 5.024218e-01	ci right 5.046423e-01	k: 392755	n:780000
SPTBN4   780000 perm   467 sec   (1670 perm/sec)   p_kst 5.035321e-01   p_cons 5.897436e-04   p_joint 3.206410e-03

Joint ci ratio: 7.791706e-02	ci left: 3.069203e-03	ci right 3.319272e-03	k: 2522	n:790000
Cons ci ratio: 1.815368e-01	ci left: 5.363309e-04	ci right 6.446007e-04	k: 465	n:790000
KS ci ratio: 4.379682e-03	ci left: 5.023842e-01	ci right 5.045905e-01	k: 397755	n:790000
SPTBN4   790000 perm   476 sec   (1660 perm/sec)   p_kst 5.034873e-01   p_cons 5.886076e-04   p_joint 3.192405e-03

Joint ci ratio: 7.868888e-02	ci left: 2.970781e-03	ci right 3.215339e-03	k: 2473	n:800000
Cons ci ratio: 1.796193e-01	ci left: 5.415619e-04	ci right 6.496075e-04	k: 475	n:800000
KS ci ratio: 4.351906e-03	ci left: 5.024275e-01	ci right 5.046200e-01	k: 402819	n:800000
SPTBN4   800000 perm   485 sec   (1649 perm/sec)   p_kst 5.035238e-01   p_cons 5.937500e-04   p_joint 3.091250e-03

Joint ci ratio: 7.909224e-02	ci left: 2.903846e-03	ci right 3.144175e-03	k: 2448	n:810000
Cons ci ratio: 1.784979e-01	ci left: 5.419514e-04	ci right 6.493267e-04	k: 481	n:810000
KS ci ratio: 4.325528e-03	ci left: 5.023686e-01	ci right 5.045475e-01	k: 407801	n:810000
SPTBN4   810000 perm   494 sec   (1639 perm/sec)   p_kst 5.034580e-01   p_cons 5.938272e-04   p_joint 3.022222e-03

Joint ci ratio: 7.966673e-02	ci left: 2.826593e-03	ci right 3.062306e-03	k: 2413	n:820000
Cons ci ratio: 1.772156e-01	ci left: 5.434988e-04	ci right 6.503242e-04	k: 488	n:820000
KS ci ratio: 4.297946e-03	ci left: 5.025062e-01	ci right 5.046718e-01	k: 412943	n:820000
SPTBN4   820000 perm   503 sec   (1630 perm/sec)   p_kst 5.035890e-01   p_cons 5.951220e-04   p_joint 2.942683e-03

Joint ci ratio: 7.815646e-02	ci left: 2.903560e-03	ci right 3.140893e-03	k: 2507	n:830000
Cons ci ratio: 1.759605e-01	ci left: 5.450116e-04	ci right 6.512951e-04	k: 495	n:830000
KS ci ratio: 4.303674e-03	ci left: 4.988165e-01	ci right 5.009690e-01	k: 414911	n:830000
SPTBN4   830000 perm   512 sec   (1620 perm/sec)   p_kst 4.998928e-01   p_cons 5.963855e-04   p_joint 3.020482e-03

Joint ci ratio: 7.833035e-02	ci left: 2.856152e-03	ci right 3.090153e-03	k: 2496	n:840000
Cons ci ratio: 1.743852e-01	ci left: 5.487680e-04	ci right 6.547250e-04	k: 504	n:840000
KS ci ratio: 4.278896e-03	ci left: 4.987159e-01	ci right 5.008556e-01	k: 419820	n:840000
SPTBN4   840000 perm   521 sec   (1611 perm/sec)   p_kst 4.997857e-01   p_cons 6.000000e-04   p_joint 2.971429e-03

Joint ci ratio: 7.457601e-02	ci left: 3.119142e-03	ci right 3.361910e-03	k: 2753	n:850000
Cons ci ratio: 1.730199e-01	ci left: 5.513146e-04	ci right 6.568429e-04	k: 512	n:850000
KS ci ratio: 4.253240e-03	ci left: 4.987706e-01	ci right 5.008976e-01	k: 424859	n:850000
SPTBN4   850000 perm   531 sec   (1602 perm/sec)   p_kst 4.998341e-01   p_cons 6.023529e-04   p_joint 3.238824e-03

Joint ci ratio: 7.489181e-02	ci left: 3.056625e-03	ci right 3.295578e-03	k: 2730	n:860000
Cons ci ratio: 1.718513e-01	ci left: 5.526922e-04	ci right 6.576956e-04	k: 519	n:860000
KS ci ratio: 4.228040e-03	ci left: 4.988241e-01	ci right 5.009387e-01	k: 429898	n:860000
SPTBN4   860000 perm   540 sec   (1593 perm/sec)   p_kst 4.998814e-01   p_cons 6.034884e-04   p_joint 3.174419e-03

Joint ci ratio: 7.437588e-02	ci left: 3.064354e-03	ci right 3.302191e-03	k: 2768	n:870000
Cons ci ratio: 1.708683e-01	ci left: 5.529402e-04	ci right 6.573279e-04	k: 525	n:870000
KS ci ratio: 4.204046e-03	ci left: 4.987856e-01	ci right 5.008880e-01	k: 434858	n:870000
SPTBN4   870000 perm   550 sec   (1582 perm/sec)   p_kst 4.998368e-01   p_cons 6.034483e-04   p_joint 3.181609e-03

Joint ci ratio: 7.398956e-02	ci left: 3.061875e-03	ci right 3.298232e-03	k: 2797	n:880000
Cons ci ratio: 1.702225e-01	ci left: 5.510082e-04	ci right 6.545976e-04	k: 529	n:880000
KS ci ratio: 4.179791e-03	ci left: 4.988275e-01	ci right 5.009180e-01	k: 439888	n:880000
SPTBN4   880000 perm   560 sec   (1571 perm/sec)   p_kst 4.998727e-01   p_cons 6.011364e-04   p_joint 3.178409e-03

Joint ci ratio: 7.432472e-02	ci left: 2.999900e-03	ci right 3.232566e-03	k: 2772	n:890000
Cons ci ratio: 1.697431e-01	ci left: 5.480444e-04	ci right 6.507567e-04	k: 532	n:890000
KS ci ratio: 4.157333e-03	ci left: 4.987022e-01	ci right 5.007809e-01	k: 444770	n:890000
SPTBN4   890000 perm   570 sec   (1561 perm/sec)   p_kst 4.997416e-01   p_cons 5.977528e-04   p_joint 3.114607e-03

Joint ci ratio: 7.431257e-02	ci left: 2.967656e-03	ci right 3.197783e-03	k: 2773	n:900000
Cons ci ratio: 1.689526e-01	ci left: 5.472751e-04	ci right 6.493169e-04	k: 537	n:900000
KS ci ratio: 4.134176e-03	ci left: 4.987076e-01	ci right 5.007747e-01	k: 449767	n:900000
SPTBN4   900000 perm   580 sec   (1552 perm/sec)   p_kst 4.997411e-01   p_cons 5.966667e-04   p_joint 3.081111e-03

Joint ci ratio: 7.403327e-02	ci left: 2.957693e-03	ci right 3.186148e-03	k: 2794	n:910000
Cons ci ratio: 1.683282e-01	ci left: 5.454711e-04	ci right 6.467626e-04	k: 541	n:910000
KS ci ratio: 4.111131e-03	ci left: 4.987458e-01	ci right 5.008015e-01	k: 454794	n:910000
SPTBN4   910000 perm   590 sec   (1543 perm/sec)   p_kst 4.997736e-01   p_cons 5.945055e-04   p_joint 3.070330e-03

Joint ci ratio: 7.361302e-02	ci left: 2.959685e-03	ci right 3.186940e-03	k: 2826	n:920000
Cons ci ratio: 1.667961e-01	ci left: 5.499559e-04	ci right 6.510574e-04	k: 551	n:920000
KS ci ratio: 4.088724e-03	ci left: 4.987517e-01	ci right 5.007962e-01	k: 459792	n:920000
SPTBN4   920000 perm   600 sec   (1534 perm/sec)   p_kst 4.997739e-01   p_cons 5.989130e-04   p_joint 3.071739e-03

Joint ci ratio: 7.357509e-02	ci left: 2.931025e-03	ci right 3.155959e-03	k: 2829	n:930000
Cons ci ratio: 1.654525e-01	ci left: 5.533176e-04	ci right 6.541361e-04	k: 560	n:930000
KS ci ratio: 4.066383e-03	ci left: 4.987940e-01	ci right 5.008275e-01	k: 464824	n:930000
SPTBN4   930000 perm   610 sec   (1526 perm/sec)   p_kst 4.998108e-01   p_cons 6.021505e-04   p_joint 3.041935e-03

Joint ci ratio: 7.320105e-02	ci left: 2.930129e-03	ci right 3.153802e-03	k: 2858	n:940000
Cons ci ratio: 1.641409e-01	ci left: 5.566109e-04	ci right 6.571461e-04	k: 569	n:940000
KS ci ratio: 4.044438e-03	ci left: 4.988312e-01	ci right 5.008539e-01	k: 469852	n:940000
SPTBN4   940000 perm   620 sec   (1517 perm/sec)   p_kst 4.998426e-01   p_cons 6.053191e-04   p_joint 3.040426e-03

Joint ci ratio: 7.335680e-02	ci left: 2.886883e-03	ci right 3.107744e-03	k: 2846	n:950000
Cons ci ratio: 1.628599e-01	ci left: 5.598380e-04	ci right 6.600896e-04	k: 578	n:950000
KS ci ratio: 4.022947e-03	ci left: 4.988551e-01	ci right 5.008670e-01	k: 474868	n:950000
SPTBN4   950000 perm   630 sec   (1509 perm/sec)   p_kst 4.998611e-01   p_cons 6.084211e-04   p_joint 2.995789e-03

Joint ci ratio: 7.322907e-02	ci left: 2.867036e-03	ci right 3.085980e-03	k: 2856	n:960000
Cons ci ratio: 1.620226e-01	ci left: 5.600023e-04	ci right 6.597176e-04	k: 584	n:960000
KS ci ratio: 4.001561e-03	ci left: 4.989076e-01	ci right 5.009090e-01	k: 479912	n:960000
SPTBN4   960000 perm   640 sec   (1500 perm/sec)   p_kst 4.999083e-01   p_cons 6.083333e-04   p_joint 2.975000e-03

Joint ci ratio: 7.292363e-02	ci left: 2.861769e-03	ci right 3.079361e-03	k: 2880	n:970000
Cons ci ratio: 1.618847e-01	ci left: 5.552181e-04	ci right 6.539892e-04	k: 585	n:970000
KS ci ratio: 3.980405e-03	ci left: 4.989725e-01	ci right 5.009636e-01	k: 484969	n:970000
SPTBN4   970000 perm   651 sec   (1491 perm/sec)   p_kst 4.999680e-01   p_cons 6.030928e-04   p_joint 2.969072e-03

Joint ci ratio: 7.257189e-02	ci left: 2.860618e-03	ci right 3.077030e-03	k: 2908	n:980000
Cons ci ratio: 1.610623e-01	ci left: 5.554277e-04	ci right 6.536854e-04	k: 591	n:980000
KS ci ratio: 3.959646e-03	ci left: 4.990279e-01	ci right 5.010088e-01	k: 490018	n:980000
SPTBN4   980000 perm   661 sec   (1483 perm/sec)   p_kst 5.000184e-01   p_cons 6.030612e-04   p_joint 2.967347e-03

Joint ci ratio: 5.863104e-02	ci left: 4.363131e-03	ci right 4.627660e-03	k: 4449	n:990000
Cons ci ratio: 1.597186e-01	ci left: 5.595130e-04	ci right 6.575885e-04	k: 601	n:990000
KS ci ratio: 3.939137e-03	ci left: 4.990913e-01	ci right 5.010622e-01	k: 495076	n:990000
SPTBN4   990000 perm   671 sec   (1475 perm/sec)   p_kst 5.000768e-01   p_cons 6.070707e-04   p_joint 4.493939e-03

Joint ci ratio: 5.832378e-02	ci left: 4.365813e-03	ci right 4.629070e-03	k: 4496	n:1000000
Cons ci ratio: 1.593224e-01	ci left: 5.567980e-04	ci right 6.541324e-04	k: 604	n:1000000
KS ci ratio: 3.919430e-03	ci left: 4.990915e-01	ci right 5.010525e-01	k: 500072	n:1000000
SPTBN4   1000000 perm   682 sec   (1467 perm/sec)   p_kst 5.000720e-01   p_cons 6.040000e-04   p_joint 4.496000e-03

Joint ci ratio: 5.809199e-02	ci left: 4.357711e-03	ci right 4.619401e-03	k: 4532	n:1010000
Cons ci ratio: 1.589291e-01	ci left: 5.541371e-04	ci right 6.507444e-04	k: 607	n:1010000
KS ci ratio: 3.900208e-03	ci left: 4.990670e-01	ci right 5.010182e-01	k: 505043	n:1010000
SPTBN4   1010000 perm   693 sec   (1458 perm/sec)   p_kst 5.000426e-01   p_cons 6.009901e-04   p_joint 4.487129e-03

Joint ci ratio: 5.790113e-02	ci left: 4.343973e-03	ci right 4.603951e-03	k: 4562	n:1020000
Cons ci ratio: 1.584090e-01	ci left: 5.524702e-04	ci right 6.484417e-04	k: 611	n:1020000
KS ci ratio: 3.881327e-03	ci left: 4.990351e-01	ci right 5.009767e-01	k: 510006	n:1020000
SPTBN4   1020000 perm   703 sec   (1450 perm/sec)   p_kst 5.000059e-01   p_cons 5.990196e-04   p_joint 4.472549e-03

Joint ci ratio: 6.703728e-02	ci left: 3.197794e-03	ci right 3.420548e-03	k: 3407	n:1030000
Cons ci ratio: 1.632876e-01	ci left: 5.135607e-04	ci right 6.057905e-04	k: 575	n:1030000
KS ci ratio: 3.862575e-03	ci left: 4.990223e-01	ci right 5.009544e-01	k: 514988	n:1030000
SPTBN4   1030000 perm   714 sec   (1442 perm/sec)   p_kst 4.999883e-01   p_cons 5.582524e-04   p_joint 3.307767e-03

Joint ci ratio: 6.678325e-02	ci left: 3.191627e-03	ci right 3.413076e-03	k: 3433	n:1040000
Cons ci ratio: 1.628642e-01	ci left: 5.113894e-04	ci right 6.029678e-04	k: 578	n:1040000
KS ci ratio: 3.844492e-03	ci left: 4.989578e-01	ci right 5.008807e-01	k: 519916	n:1040000
SPTBN4   1040000 perm   725 sec   (1434 perm/sec)   p_kst 4.999192e-01   p_cons 5.557692e-04   p_joint 3.300962e-03

Joint ci ratio: 6.721772e-02	ci left: 3.120024e-03	ci right 3.337968e-03	k: 3389	n:1050000
Cons ci ratio: 1.618884e-01	ci left: 5.129149e-04	ci right 6.041626e-04	k: 585	n:1050000
KS ci ratio: 3.826623e-03	ci left: 4.988994e-01	ci right 5.008130e-01	k: 524849	n:1050000
SPTBN4   1050000 perm   736 sec   (1426 perm/sec)   p_kst 4.998562e-01   p_cons 5.571429e-04   p_joint 3.227619e-03

Joint ci ratio: 6.701085e-02	ci left: 3.110069e-03	ci right 3.326622e-03	k: 3410	n:1060000
Cons ci ratio: 1.607944e-01	ci left: 5.153185e-04	ci right 6.063145e-04	k: 593	n:1060000
KS ci ratio: 3.808297e-03	ci left: 4.989345e-01	ci right 5.008391e-01	k: 529880	n:1060000
SPTBN4   1060000 perm   747 sec   (1418 perm/sec)   p_kst 4.998868e-01   p_cons 5.594340e-04   p_joint 3.216981e-03

Joint ci ratio: 6.503326e-02	ci left: 3.274034e-03	ci right 3.495023e-03	k: 3620	n:1070000
Cons ci ratio: 1.601219e-01	ci left: 5.149877e-04	ci right 6.055084e-04	k: 598	n:1070000
KS ci ratio: 3.790282e-03	ci left: 4.989624e-01	ci right 5.008581e-01	k: 534904	n:1070000
SPTBN4   1070000 perm   758 sec   (1411 perm/sec)   p_kst 4.999103e-01   p_cons 5.588785e-04   p_joint 3.383178e-03

Joint ci ratio: 6.465910e-02	ci left: 3.281977e-03	ci right 3.502181e-03	k: 3662	n:1080000
Cons ci ratio: 1.594579e-01	ci left: 5.146638e-04	ci right 6.047165e-04	k: 603	n:1080000
KS ci ratio: 3.772247e-03	ci left: 4.990260e-01	ci right 5.009129e-01	k: 539967	n:1080000
SPTBN4   1080000 perm   770 sec   (1403 perm/sec)   p_kst 4.999694e-01   p_cons 5.583333e-04   p_joint 3.390741e-03

Joint ci ratio: 6.443984e-02	ci left: 3.274433e-03	ci right 3.493357e-03	k: 3687	n:1090000
Cons ci ratio: 1.584120e-01	ci left: 5.169897e-04	ci right 6.067997e-04	k: 611	n:1090000
KS ci ratio: 3.755011e-03	ci left: 4.990159e-01	ci right 5.008942e-01	k: 544951	n:1090000
SPTBN4   1090000 perm   781 sec   (1396 perm/sec)   p_kst 4.999550e-01   p_cons 5.605505e-04   p_joint 3.382569e-03

Joint ci ratio: 6.458155e-02	ci left: 3.230352e-03	ci right 3.446822e-03	k: 3671	n:1100000
Cons ci ratio: 1.580254e-01	ci left: 5.149091e-04	ci right 6.041185e-04	k: 614	n:1100000
KS ci ratio: 3.737731e-03	ci left: 4.990434e-01	ci right 5.009130e-01	k: 549976	n:1100000
SPTBN4   1100000 perm   792 sec   (1389 perm/sec)   p_kst 4.999782e-01   p_cons 5.581818e-04   p_joint 3.337273e-03

Joint ci ratio: 6.272443e-02	ci left: 3.396303e-03	ci right 3.617111e-03	k: 3891	n:1110000
Cons ci ratio: 1.573869e-01	ci left: 5.145970e-04	ci right 6.033581e-04	k: 619	n:1110000
KS ci ratio: 3.721076e-03	ci left: 4.990180e-01	ci right 5.008793e-01	k: 554943	n:1110000
SPTBN4   1110000 perm   803 sec   (1382 perm/sec)   p_kst 4.999486e-01   p_cons 5.576577e-04   p_joint 3.505405e-03

Joint ci ratio: 6.248422e-02	ci left: 3.392345e-03	ci right 3.612021e-03	k: 3921	n:1120000
Cons ci ratio: 1.566308e-01	ci left: 5.151491e-04	ci right 6.035385e-04	k: 625	n:1120000
KS ci ratio: 3.704272e-03	ci left: 4.990432e-01	ci right 5.008961e-01	k: 559966	n:1120000
SPTBN4   1120000 perm   815 sec   (1375 perm/sec)   p_kst 4.999696e-01   p_cons 5.580357e-04   p_joint 3.500893e-03

Joint ci ratio: 6.215999e-02	ci left: 3.398042e-03	ci right 3.616904e-03	k: 3962	n:1130000
Cons ci ratio: 1.560091e-01	ci left: 5.148419e-04	ci right 6.027951e-04	k: 630	n:1130000
KS ci ratio: 3.688567e-03	ci left: 4.989494e-01	ci right 5.007940e-01	k: 564855	n:1130000
SPTBN4   1130000 perm   826 sec   (1368 perm/sec)   p_kst 4.998717e-01   p_cons 5.575221e-04   p_joint 3.506195e-03

Joint ci ratio: 6.263858e-02	ci left: 3.316420e-03	ci right 3.531729e-03	k: 3902	n:1140000
Cons ci ratio: 1.558859e-01	ci left: 5.111686e-04	ci right 5.984190e-04	k: 631	n:1140000
KS ci ratio: 3.672500e-03	ci left: 4.989335e-01	ci right 5.007700e-01	k: 569831	n:1140000
SPTBN4   1140000 perm   838 sec   (1360 perm/sec)   p_kst 4.998518e-01   p_cons 5.535088e-04   p_joint 3.422807e-03

Joint ci ratio: 6.249508e-02	ci left: 3.302988e-03	ci right 3.516916e-03	k: 3920	n:1150000
Cons ci ratio: 1.555174e-01	ci left: 5.092307e-04	ci right 5.959256e-04	k: 634	n:1150000
KS ci ratio: 3.656667e-03	ci left: 4.989144e-01	ci right 5.007430e-01	k: 574803	n:1150000
SPTBN4   1150000 perm   850 sec   (1353 perm/sec)   p_kst 4.998287e-01   p_cons 5.513043e-04   p_joint 3.408696e-03

Joint ci ratio: 6.310447e-02	ci left: 3.210869e-03	ci right 3.420933e-03	k: 3845	n:1160000
Cons ci ratio: 1.549088e-01	ci left: 5.089837e-04	ci right 5.952660e-04	k: 639	n:1160000
KS ci ratio: 3.641005e-03	ci left: 4.989000e-01	ci right 5.007207e-01	k: 579780	n:1160000
SPTBN4   1160000 perm   861 sec   (1347 perm/sec)   p_kst 4.998103e-01   p_cons 5.508621e-04   p_joint 3.314655e-03

Joint ci ratio: 6.290874e-02	ci left: 3.203615e-03	ci right 3.412531e-03	k: 3869	n:1170000
Cons ci ratio: 1.547882e-01	ci left: 5.054549e-04	ci right 5.910661e-04	k: 640	n:1170000
KS ci ratio: 3.625288e-03	ci left: 4.989209e-01	ci right 5.007338e-01	k: 584798	n:1170000
SPTBN4   1170000 perm   873 sec   (1340 perm/sec)   p_kst 4.998274e-01   p_cons 5.470085e-04   p_joint 3.306838e-03

Joint ci ratio: 6.267446e-02	ci left: 3.200656e-03	ci right 3.408573e-03	k: 3898	n:1180000
Cons ci ratio: 1.545475e-01	ci left: 5.028007e-04	ci right 5.878176e-04	k: 642	n:1180000
KS ci ratio: 3.609517e-03	ci left: 4.989771e-01	ci right 5.007822e-01	k: 589858	n:1180000
SPTBN4   1180000 perm   885 sec   (1333 perm/sec)   p_kst 4.998797e-01   p_cons 5.440678e-04   p_joint 3.303390e-03

Joint ci ratio: 6.240294e-02	ci left: 3.201885e-03	ci right 3.408948e-03	k: 3932	n:1190000
Cons ci ratio: 1.541884e-01	ci left: 5.009991e-04	ci right 5.854963e-04	k: 645	n:1190000
KS ci ratio: 3.594257e-03	ci left: 4.989895e-01	ci right 5.007870e-01	k: 594867	n:1190000
SPTBN4   1190000 perm   897 sec   (1326 perm/sec)   p_kst 4.998882e-01   p_cons 5.420168e-04   p_joint 3.304202e-03

Joint ci ratio: 6.211921e-02	ci left: 3.204735e-03	ci right 3.411007e-03	k: 3968	n:1200000
Cons ci ratio: 1.532423e-01	ci left: 5.032344e-04	ci right 5.875400e-04	k: 653	n:1200000
KS ci ratio: 3.579356e-03	ci left: 4.989783e-01	ci right 5.007683e-01	k: 599848	n:1200000
SPTBN4   1200000 perm   910 sec   (1319 perm/sec)   p_kst 4.998733e-01   p_cons 5.441667e-04   p_joint 3.306667e-03

Joint ci ratio: 6.215936e-02	ci left: 3.174180e-03	ci right 3.378622e-03	k: 3963	n:1210000
Cons ci ratio: 1.523134e-01	ci left: 5.054343e-04	ci right 5.895484e-04	k: 661	n:1210000
KS ci ratio: 3.564516e-03	ci left: 4.989847e-01	ci right 5.007673e-01	k: 604850	n:1210000
SPTBN4   1210000 perm   922 sec   (1312 perm/sec)   p_kst 4.998760e-01   p_cons 5.462810e-04   p_joint 3.275207e-03

Joint ci ratio: 6.277485e-02	ci left: 3.086029e-03	ci right 3.286833e-03	k: 3886	n:1220000
Cons ci ratio: 1.520840e-01	ci left: 5.028682e-04	ci right 5.864178e-04	k: 663	n:1220000
KS ci ratio: 3.549718e-03	ci left: 4.990107e-01	ci right 5.007860e-01	k: 609876	n:1220000
SPTBN4   1220000 perm   934 sec   (1306 perm/sec)   p_kst 4.998984e-01   p_cons 5.434426e-04   p_joint 3.185246e-03

Joint ci ratio: 6.251003e-02	ci left: 3.087349e-03	ci right 3.287360e-03	k: 3919	n:1230000
Cons ci ratio: 1.515147e-01	ci left: 5.026905e-04	ci right 5.858695e-04	k: 668	n:1230000
KS ci ratio: 3.535696e-03	ci left: 4.989526e-01	ci right 5.007206e-01	k: 614799	n:1230000
SPTBN4   1230000 perm   946 sec   (1300 perm/sec)   p_kst 4.998366e-01   p_cons 5.430894e-04   p_joint 3.186179e-03

Joint ci ratio: 6.263116e-02	ci left: 3.050541e-03	ci right 3.248565e-03	k: 3904	n:1240000
Cons ci ratio: 1.508397e-01	ci left: 5.032922e-04	ci right 5.861664e-04	k: 674	n:1240000
KS ci ratio: 3.521305e-03	ci left: 4.989712e-01	ci right 5.007321e-01	k: 619816	n:1240000
SPTBN4   1240000 perm   959 sec   (1293 perm/sec)   p_kst 4.998516e-01   p_cons 5.435484e-04   p_joint 3.148387e-03

Joint ci ratio: 6.233640e-02	ci left: 3.055275e-03	ci right 3.252638e-03	k: 3941	n:1250000
Cons ci ratio: 1.500635e-01	ci left: 5.046551e-04	ci right 5.872877e-04	k: 681	n:1250000
KS ci ratio: 3.507233e-03	ci left: 4.989687e-01	ci right 5.007225e-01	k: 624807	n:1250000
SPTBN4   1250000 perm   971 sec   (1287 perm/sec)   p_kst 4.998456e-01   p_cons 5.448000e-04   p_joint 3.152800e-03

Joint ci ratio: 6.199108e-02	ci left: 3.065405e-03	ci right 3.262287e-03	k: 3985	n:1260000
Cons ci ratio: 1.491909e-01	ci left: 5.067614e-04	ci right 5.892133e-04	k: 689	n:1260000
KS ci ratio: 3.493296e-03	ci left: 4.989710e-01	ci right 5.007179e-01	k: 629804	n:1260000
SPTBN4   1260000 perm   984 sec   (1281 perm/sec)   p_kst 4.998444e-01   p_cons 5.468254e-04   p_joint 3.162698e-03

Joint ci ratio: 6.175144e-02	ci left: 3.065300e-03	ci right 3.261386e-03	k: 4016	n:1270000
Cons ci ratio: 1.481212e-01	ci left: 5.103524e-04	ci right 5.927405e-04	k: 699	n:1270000
KS ci ratio: 3.479694e-03	ci left: 4.989489e-01	ci right 5.006889e-01	k: 634770	n:1270000
SPTBN4   1270000 perm   997 sec   (1274 perm/sec)   p_kst 4.998189e-01   p_cons 5.503937e-04   p_joint 3.162205e-03

Joint ci ratio: 6.224375e-02	ci left: 2.992893e-03	ci right 3.185929e-03	k: 3953	n:1280000
Cons ci ratio: 1.471779e-01	ci left: 5.131368e-04	ci right 5.954004e-04	k: 708	n:1280000
KS ci ratio: 3.466216e-03	ci left: 4.989319e-01	ci right 5.006650e-01	k: 639742	n:1280000
SPTBN4   1280000 perm   1010 sec   (1268 perm/sec)   p_kst 4.997984e-01   p_cons 5.531250e-04   p_joint 3.088281e-03

Joint ci ratio: 6.197777e-02	ci left: 2.995640e-03	ci right 3.187998e-03	k: 3987	n:1290000
Cons ci ratio: 1.465590e-01	ci left: 5.136393e-04	ci right 5.956069e-04	k: 714	n:1290000
KS ci ratio: 3.452867e-03	ci left: 4.989190e-01	ci right 5.006454e-01	k: 644719	n:1290000
SPTBN4   1290000 perm   1022 sec   (1262 perm/sec)   p_kst 4.997822e-01   p_cons 5.534884e-04   p_joint 3.090698e-03

Joint ci ratio: 6.184643e-02	ci left: 2.985470e-03	ci right 3.176754e-03	k: 4004	n:1300000
Cons ci ratio: 1.461508e-01	ci left: 5.126524e-04	ci right 5.942148e-04	k: 718	n:1300000
KS ci ratio: 3.439577e-03	ci left: 4.989201e-01	ci right 5.006399e-01	k: 649714	n:1300000
SPTBN4   1300000 perm   1035 sec   (1256 perm/sec)   p_kst 4.997800e-01   p_cons 5.523077e-04   p_joint 3.080000e-03

Joint ci ratio: 6.210433e-02	ci left: 2.937878e-03	ci right 3.126926e-03	k: 3971	n:1310000
Cons ci ratio: 1.455448e-01	ci left: 5.131521e-04	ci right 5.944260e-04	k: 724	n:1310000
KS ci ratio: 3.426631e-03	ci left: 4.988930e-01	ci right 5.006062e-01	k: 654672	n:1310000
SPTBN4   1310000 perm   1048 sec   (1250 perm/sec)   p_kst 4.997496e-01   p_cons 5.526718e-04   p_joint 3.031298e-03

Joint ci ratio: 6.250085e-02	ci left: 2.878330e-03	ci right 3.064771e-03	k: 3921	n:1320000
Cons ci ratio: 1.451450e-01	ci left: 5.121847e-04	ci right 5.930632e-04	k: 728	n:1320000
KS ci ratio: 3.413438e-03	ci left: 4.989239e-01	ci right 5.006306e-01	k: 659706	n:1320000
SPTBN4   1320000 perm   1061 sec   (1244 perm/sec)   p_kst 4.997773e-01   p_cons 5.515152e-04   p_joint 2.970455e-03

Joint ci ratio: 6.242179e-02	ci left: 2.864089e-03	ci right 3.049364e-03	k: 3931	n:1330000
Cons ci ratio: 1.444531e-01	ci left: 5.134062e-04	ci right 5.940578e-04	k: 735	n:1330000
KS ci ratio: 3.400120e-03	ci left: 4.989950e-01	ci right 5.006952e-01	k: 664794	n:1330000
SPTBN4   1330000 perm   1074 sec   (1238 perm/sec)   p_kst 4.998451e-01   p_cons 5.526316e-04   p_joint 2.955639e-03

Joint ci ratio: 6.213783e-02	ci left: 2.869162e-03	ci right 3.053892e-03	k: 3967	n:1340000
Cons ci ratio: 1.440622e-01	ci left: 5.124521e-04	ci right 5.927173e-04	k: 739	n:1340000
KS ci ratio: 3.387523e-03	ci left: 4.989814e-01	ci right 5.006753e-01	k: 669770	n:1340000
SPTBN4   1340000 perm   1087 sec   (1232 perm/sec)   p_kst 4.998284e-01   p_cons 5.514925e-04   p_joint 2.960448e-03

Joint ci ratio: 6.194311e-02	ci left: 2.866140e-03	ci right 3.050076e-03	k: 3992	n:1350000
Cons ci ratio: 1.436745e-01	ci left: 5.115124e-04	ci right 5.913963e-04	k: 743	n:1350000
KS ci ratio: 3.375105e-03	ci left: 4.989621e-01	ci right 5.006497e-01	k: 674738	n:1350000
SPTBN4   1350000 perm   1101 sec   (1226 perm/sec)   p_kst 4.998059e-01   p_cons 5.503704e-04   p_joint 2.957037e-03

Joint ci ratio: 6.193601e-02	ci left: 2.845789e-03	ci right 3.028397e-03	k: 3993	n:1360000
Cons ci ratio: 1.433859e-01	ci left: 5.098779e-04	ci right 5.893329e-04	k: 746	n:1360000
KS ci ratio: 3.362639e-03	ci left: 4.989703e-01	ci right 5.006517e-01	k: 679743	n:1360000
SPTBN4   1360000 perm   1114 sec   (1221 perm/sec)   p_kst 4.998110e-01   p_cons 5.485294e-04   p_joint 2.936029e-03

Joint ci ratio: 6.169700e-02	ci left: 2.847295e-03	ci right 3.029269e-03	k: 4024	n:1370000
Cons ci ratio: 1.426240e-01	ci left: 5.117867e-04	ci right 5.910794e-04	k: 754	n:1370000
KS ci ratio: 3.350629e-03	ci left: 4.989310e-01	ci right 5.006062e-01	k: 684683	n:1370000
SPTBN4   1370000 perm   1127 sec   (1216 perm/sec)   p_kst 4.997686e-01   p_cons 5.503650e-04   p_joint 2.937226e-03

Joint ci ratio: 6.143037e-02	ci left: 2.851634e-03	ci right 3.033070e-03	k: 4059	n:1380000
Cons ci ratio: 1.422478e-01	ci left: 5.108734e-04	ci right 5.897980e-04	k: 758	n:1380000
KS ci ratio: 3.338417e-03	ci left: 4.989415e-01	ci right 5.006107e-01	k: 689691	n:1380000
SPTBN4   1380000 perm   1140 sec   (1210 perm/sec)   p_kst 4.997761e-01   p_cons 5.492754e-04   p_joint 2.941304e-03

Joint ci ratio: 6.131752e-02	ci left: 2.841744e-03	ci right 3.022207e-03	k: 4074	n:1390000
Cons ci ratio: 1.417816e-01	ci left: 5.106673e-04	ci right 5.892797e-04	k: 763	n:1390000
KS ci ratio: 3.325782e-03	ci left: 4.990353e-01	ci right 5.006985e-01	k: 694815	n:1390000
SPTBN4   1390000 perm   1154 sec   (1205 perm/sec)   p_kst 4.998669e-01   p_cons 5.489209e-04   p_joint 2.930935e-03

Joint ci ratio: 6.131816e-02	ci left: 2.821445e-03	ci right 3.000621e-03	k: 4074	n:1400000
Cons ci ratio: 1.411364e-01	ci left: 5.118428e-04	ci right 5.902474e-04	k: 770	n:1400000
KS ci ratio: 3.314284e-03	ci left: 4.989778e-01	ci right 5.006350e-01	k: 699729	n:1400000
SPTBN4   1400000 perm   1167 sec   (1199 perm/sec)   p_kst 4.998064e-01   p_cons 5.500000e-04   p_joint 2.910000e-03

Joint ci ratio: 6.109367e-02	ci left: 2.822386e-03	ci right 3.000942e-03	k: 4104	n:1410000
Cons ci ratio: 1.402297e-01	ci left: 5.150553e-04	ci right 5.934028e-04	k: 780	n:1410000
KS ci ratio: 3.302506e-03	ci left: 4.989814e-01	ci right 5.006327e-01	k: 704728	n:1410000
SPTBN4   1410000 perm   1181 sec   (1194 perm/sec)   p_kst 4.998071e-01   p_cons 5.531915e-04   p_joint 2.910638e-03

Joint ci ratio: 6.130434e-02	ci left: 2.783092e-03	ci right 2.959791e-03	k: 4076	n:1420000
Cons ci ratio: 1.397830e-01	ci left: 5.148260e-04	ci right 5.928683e-04	k: 785	n:1420000
KS ci ratio: 3.290695e-03	ci left: 4.990090e-01	ci right 5.006544e-01	k: 709761	n:1420000
SPTBN4   1420000 perm   1195 sec   (1188 perm/sec)   p_kst 4.998317e-01   p_cons 5.528169e-04   p_joint 2.870423e-03

Joint ci ratio: 6.104274e-02	ci left: 2.787731e-03	ci right 2.963942e-03	k: 4111	n:1430000
Cons ci ratio: 1.391646e-01	ci left: 5.159501e-04	ci right 5.937882e-04	k: 792	n:1430000
KS ci ratio: 3.279216e-03	ci left: 4.990046e-01	ci right 5.006443e-01	k: 714749	n:1430000
SPTBN4   1430000 perm   1209 sec   (1183 perm/sec)   p_kst 4.998245e-01   p_cons 5.538462e-04   p_joint 2.874825e-03

Joint ci ratio: 6.089502e-02	ci left: 2.782049e-03	ci right 2.957460e-03	k: 4131	n:1440000
Cons ci ratio: 1.385544e-01	ci left: 5.170594e-04	ci right 5.946945e-04	k: 799	n:1440000
KS ci ratio: 3.267721e-03	ci left: 4.990212e-01	ci right 5.006552e-01	k: 719767	n:1440000
SPTBN4   1440000 perm   1223 sec   (1178 perm/sec)   p_kst 4.998382e-01   p_cons 5.548611e-04   p_joint 2.868750e-03

Joint ci ratio: 6.100677e-02	ci left: 2.752674e-03	ci right 2.926563e-03	k: 4116	n:1450000
Cons ci ratio: 1.376962e-01	ci left: 5.201517e-04	ci right 5.977278e-04	k: 809	n:1450000
KS ci ratio: 3.256412e-03	ci left: 4.990272e-01	ci right 5.006556e-01	k: 724770	n:1450000
SPTBN4   1450000 perm   1237 sec   (1172 perm/sec)   p_kst 4.998414e-01   p_cons 5.579310e-04   p_joint 2.838621e-03

Joint ci ratio: 6.091840e-02	ci left: 2.741913e-03	ci right 2.914863e-03	k: 4128	n:1460000
Cons ci ratio: 1.365211e-01	ci left: 5.258493e-04	ci right 6.035514e-04	k: 823	n:1460000
KS ci ratio: 3.245052e-03	ci left: 4.990592e-01	ci right 5.006819e-01	k: 729811	n:1460000
SPTBN4   1460000 perm   1251 sec   (1167 perm/sec)   p_kst 4.998705e-01   p_cons 5.636986e-04   p_joint 2.827397e-03

Joint ci ratio: 6.069094e-02	ci left: 2.744029e-03	ci right 2.916443e-03	k: 4159	n:1470000
Cons ci ratio: 1.362734e-01	ci left: 5.242432e-04	ci right 6.015561e-04	k: 826	n:1470000
KS ci ratio: 3.233946e-03	ci left: 4.990696e-01	ci right 5.006868e-01	k: 734821	n:1470000
SPTBN4   1470000 perm   1266 sec   (1161 perm/sec)   p_kst 4.998782e-01   p_cons 5.619048e-04   p_joint 2.829252e-03

Joint ci ratio: 6.045878e-02	ci left: 2.746782e-03	ci right 2.918686e-03	k: 4191	n:1480000
Cons ci ratio: 1.360270e-01	ci left: 5.226590e-04	ci right 5.995876e-04	k: 829	n:1480000
KS ci ratio: 3.222988e-03	ci left: 4.990745e-01	ci right 5.006863e-01	k: 739823	n:1480000
SPTBN4   1480000 perm   1280 sec   (1156 perm/sec)   p_kst 4.998804e-01   p_cons 5.601351e-04   p_joint 2.831757e-03

Joint ci ratio: 6.038717e-02	ci left: 2.734957e-03	ci right 2.905911e-03	k: 4201	n:1490000
Cons ci ratio: 1.352953e-01	ci left: 5.249865e-04	ci right 6.018086e-04	k: 838	n:1490000
KS ci ratio: 3.212183e-03	ci left: 4.990727e-01	ci right 5.006790e-01	k: 744815	n:1490000
SPTBN4   1490000 perm   1294 sec   (1152 perm/sec)   p_kst 4.998758e-01   p_cons 5.624161e-04   p_joint 2.819463e-03

Joint ci ratio: 6.022268e-02	ci left: 2.731826e-03	ci right 2.902103e-03	k: 4224	n:1500000
Cons ci ratio: 1.352149e-01	ci left: 5.221307e-04	ci right 5.984858e-04	k: 839	n:1500000
KS ci ratio: 3.201679e-03	ci left: 4.990408e-01	ci right 5.006418e-01	k: 749762	n:1500000
SPTBN4   1500000 perm   1308 sec   (1147 perm/sec)   p_kst 4.998413e-01   p_cons 5.593333e-04   p_joint 2.816000e-03

Joint ci ratio: 6.003119e-02	ci left: 2.731346e-03	ci right 2.901033e-03	k: 4251	n:1510000
Cons ci ratio: 1.348942e-01	ci left: 5.212323e-04	ci right 5.972608e-04	k: 843	n:1510000
KS ci ratio: 3.191155e-03	ci left: 4.990287e-01	ci right 5.006243e-01	k: 754738	n:1510000
SPTBN4   1510000 perm   1322 sec   (1142 perm/sec)   p_kst 4.998265e-01   p_cons 5.582781e-04   p_joint 2.815232e-03

Joint ci ratio: 5.316567e-02	ci left: 3.469050e-03	ci right 3.659165e-03	k: 5416	n:1520000
Cons ci ratio: 1.345758e-01	ci left: 5.203460e-04	ci right 5.960517e-04	k: 847	n:1520000
KS ci ratio: 2.997973e-03	ci left: 5.285719e-01	ci right 5.301596e-01	k: 804636	n:1520000
SPTBN4   1520000 perm   1336 sec   (1138 perm/sec)   p_kst 5.293658e-01   p_cons 5.572368e-04   p_joint 3.563158e-03

Joint ci ratio: 5.329975e-02	ci left: 3.428962e-03	ci right 3.617369e-03	k: 5389	n:1530000
Cons ci ratio: 1.337111e-01	ci left: 5.238934e-04	ci right 5.995865e-04	k: 858	n:1530000
KS ci ratio: 2.988076e-03	ci left: 5.285885e-01	ci right 5.301709e-01	k: 809951	n:1530000
SPTBN4   1530000 perm   1350 sec   (1133 perm/sec)   p_kst 5.293797e-01   p_cons 5.607843e-04   p_joint 3.522222e-03

Joint ci ratio: 5.313738e-02	ci left: 3.427840e-03	ci right 3.615593e-03	k: 5422	n:1540000
Cons ci ratio: 1.331695e-01	ci left: 5.248852e-04	ci right 6.003902e-04	k: 865	n:1540000
KS ci ratio: 2.978237e-03	ci left: 5.286113e-01	ci right 5.301886e-01	k: 815276	n:1540000
SPTBN4   1540000 perm   1365 sec   (1128 perm/sec)   p_kst 5.294000e-01   p_cons 5.616883e-04   p_joint 3.520779e-03

Joint ci ratio: 5.292296e-02	ci left: 3.433736e-03	ci right 3.621030e-03	k: 5466	n:1550000
Cons ci ratio: 1.325585e-01	ci left: 5.264886e-04	ci right 6.018494e-04	k: 873	n:1550000
KS ci ratio: 2.968791e-03	ci left: 5.285842e-01	ci right 5.301564e-01	k: 820524	n:1550000
SPTBN4   1550000 perm   1379 sec   (1124 perm/sec)   p_kst 5.293703e-01   p_cons 5.632258e-04   p_joint 3.526452e-03

Joint ci ratio: 5.274956e-02	ci left: 3.434497e-03	ci right 3.621200e-03	k: 5502	n:1560000
Cons ci ratio: 1.321059e-01	ci left: 5.268326e-04	ci right 6.019648e-04	k: 879	n:1560000
KS ci ratio: 2.958936e-03	ci left: 5.286414e-01	ci right 5.302085e-01	k: 825903	n:1560000
SPTBN4   1560000 perm   1394 sec   (1119 perm/sec)   p_kst 5.294250e-01   p_cons 5.634615e-04   p_joint 3.526923e-03

Joint ci ratio: 5.459804e-02	ci left: 3.183245e-03	ci right 3.362545e-03	k: 5137	n:1570000
Cons ci ratio: 1.315093e-01	ci left: 5.284045e-04	ci right 6.033941e-04	k: 887	n:1570000
KS ci ratio: 2.949340e-03	ci left: 5.286705e-01	ci right 5.302326e-01	k: 831239	n:1570000
SPTBN4   1570000 perm   1409 sec   (1114 perm/sec)   p_kst 5.294516e-01   p_cons 5.649682e-04   p_joint 3.271975e-03

Joint ci ratio: 5.444996e-02	ci left: 3.180577e-03	ci right 3.359226e-03	k: 5165	n:1580000
Cons ci ratio: 1.312142e-01	ci left: 5.275086e-04	ci right 6.021899e-04	k: 891	n:1580000
KS ci ratio: 2.940102e-03	ci left: 5.286543e-01	ci right 5.302115e-01	k: 836504	n:1580000
SPTBN4   1580000 perm   1424 sec   (1109 perm/sec)   p_kst 5.294329e-01   p_cons 5.639241e-04   p_joint 3.268987e-03

Joint ci ratio: 5.442939e-02	ci left: 3.163054e-03	ci right 3.340649e-03	k: 5169	n:1590000
Cons ci ratio: 1.306296e-01	ci left: 5.290576e-04	ci right 6.035987e-04	k: 899	n:1590000
KS ci ratio: 2.930821e-03	ci left: 5.286603e-01	ci right 5.302126e-01	k: 841804	n:1590000
SPTBN4   1590000 perm   1440 sec   (1104 perm/sec)   p_kst 5.294365e-01   p_cons 5.654088e-04   p_joint 3.250943e-03

Joint ci ratio: 5.421470e-02	ci left: 3.168562e-03	ci right 3.345743e-03	k: 5210	n:1600000
Cons ci ratio: 1.301245e-01	ci left: 5.299833e-04	ci right 6.043438e-04	k: 906	n:1600000
KS ci ratio: 2.921825e-03	ci left: 5.286325e-01	ci right 5.301799e-01	k: 847050	n:1600000
SPTBN4   1600000 perm   1456 sec   (1099 perm/sec)   p_kst 5.294062e-01   p_cons 5.662500e-04   p_joint 3.256250e-03

Joint ci ratio: 5.404383e-02	ci left: 3.169101e-03	ci right 3.345736e-03	k: 5243	n:1610000
Cons ci ratio: 1.297674e-01	ci left: 5.296961e-04	ci right 6.037966e-04	k: 911	n:1610000
KS ci ratio: 2.912719e-03	ci left: 5.286380e-01	ci right 5.301806e-01	k: 852349	n:1610000
SPTBN4   1610000 perm   1473 sec   (1093 perm/sec)   p_kst 5.294093e-01   p_cons 5.658385e-04   p_joint 3.256522e-03

Joint ci ratio: 5.443631e-02	ci left: 3.103868e-03	ci right 3.278163e-03	k: 5168	n:1620000
Cons ci ratio: 1.294131e-01	ci left: 5.294128e-04	ci right 6.032559e-04	k: 916	n:1620000
KS ci ratio: 2.903694e-03	ci left: 5.286440e-01	ci right 5.301818e-01	k: 857649	n:1620000
SPTBN4   1620000 perm   1488 sec   (1089 perm/sec)   p_kst 5.294130e-01   p_cons 5.654321e-04   p_joint 3.190123e-03

Joint ci ratio: 5.346501e-02	ci left: 3.199217e-03	ci right 3.375562e-03	k: 5357	n:1630000
Cons ci ratio: 1.287826e-01	ci left: 5.315080e-04	ci right 6.052546e-04	k: 925	n:1630000
KS ci ratio: 2.894813e-03	ci left: 5.286395e-01	ci right 5.301726e-01	k: 862932	n:1630000
SPTBN4   1630000 perm   1502 sec   (1085 perm/sec)   p_kst 5.294061e-01   p_cons 5.674847e-04   p_joint 3.286503e-03

Joint ci ratio: 4.973011e-02	ci left: 3.680512e-03	ci right 3.868808e-03	k: 6189	n:1640000
Cons ci ratio: 1.284363e-01	ci left: 5.312178e-04	ci right 6.047108e-04	k: 930	n:1640000
KS ci ratio: 2.885999e-03	ci left: 5.286376e-01	ci right 5.301660e-01	k: 868219	n:1640000
SPTBN4   1640000 perm   1518 sec   (1080 perm/sec)   p_kst 5.294018e-01   p_cons 5.670732e-04   p_joint 3.773780e-03

Joint ci ratio: 4.961016e-02	ci left: 3.676161e-03	ci right 3.863769e-03	k: 6219	n:1650000
Cons ci ratio: 1.281613e-01	ci left: 5.303447e-04	ci right 6.035479e-04	k: 934	n:1650000
KS ci ratio: 2.877195e-03	ci left: 5.286477e-01	ci right 5.301715e-01	k: 873526	n:1650000
SPTBN4   1650000 perm   1533 sec   (1076 perm/sec)   p_kst 5.294097e-01   p_cons 5.660606e-04   p_joint 3.769091e-03

Joint ci ratio: 4.998723e-02	ci left: 3.598686e-03	ci right 3.783775e-03	k: 6126	n:1660000
Cons ci ratio: 1.277521e-01	ci left: 5.306486e-04	ci right 6.036422e-04	k: 940	n:1660000
KS ci ratio: 2.868263e-03	ci left: 5.286940e-01	ci right 5.302132e-01	k: 878893	n:1660000
SPTBN4   1660000 perm   1550 sec   (1071 perm/sec)   p_kst 5.294536e-01   p_cons 5.662651e-04   p_joint 3.690361e-03

Joint ci ratio: 5.029353e-02	ci left: 3.533378e-03	ci right 3.716254e-03	k: 6052	n:1670000
Cons ci ratio: 1.271454e-01	ci left: 5.326886e-04	ci right 6.055885e-04	k: 949	n:1670000
KS ci ratio: 2.859777e-03	ci left: 5.286762e-01	ci right 5.301908e-01	k: 884154	n:1670000
SPTBN4   1670000 perm   1565 sec   (1067 perm/sec)   p_kst 5.294335e-01   p_cons 5.682635e-04   p_joint 3.623952e-03

Joint ci ratio: 5.016531e-02	ci left: 3.530566e-03	ci right 3.712818e-03	k: 6083	n:1680000
Cons ci ratio: 1.267457e-01	ci left: 5.329758e-04	ci right 6.056686e-04	k: 955	n:1680000
KS ci ratio: 2.851347e-03	ci left: 5.286622e-01	ci right 5.301723e-01	k: 889421	n:1680000
SPTBN4   1680000 perm   1580 sec   (1063 perm/sec)   p_kst 5.294173e-01   p_cons 5.684524e-04   p_joint 3.620833e-03

Joint ci ratio: 5.016172e-02	ci left: 3.510259e-03	ci right 3.691449e-03	k: 6084	n:1690000
Cons ci ratio: 1.264156e-01	ci left: 5.326870e-04	ci right 6.051370e-04	k: 960	n:1690000
KS ci ratio: 2.843122e-03	ci left: 5.286252e-01	ci right 5.301309e-01	k: 894649	n:1690000
SPTBN4   1690000 perm   1596 sec   (1059 perm/sec)   p_kst 5.293781e-01   p_cons 5.680473e-04   p_joint 3.600000e-03

Joint ci ratio: 5.009619e-02	ci left: 3.498903e-03	ci right 3.679265e-03	k: 6100	n:1700000
Cons ci ratio: 1.260228e-01	ci left: 5.329715e-04	ci right 6.052181e-04	k: 966	n:1700000
KS ci ratio: 2.834800e-03	ci left: 5.286182e-01	ci right 5.301194e-01	k: 899927	n:1700000
SPTBN4   1700000 perm   1611 sec   (1055 perm/sec)   p_kst 5.293688e-01   p_cons 5.682353e-04   p_joint 3.588235e-03

Joint ci ratio: 4.991640e-02	ci left: 3.503852e-03	ci right 3.683801e-03	k: 6144	n:1710000
Cons ci ratio: 1.256983e-01	ci left: 5.326866e-04	ci right 6.046948e-04	k: 971	n:1710000
KS ci ratio: 2.826259e-03	ci left: 5.286627e-01	ci right 5.301595e-01	k: 905293	n:1710000
SPTBN4   1710000 perm   1628 sec   (1050 perm/sec)   p_kst 5.294111e-01   p_cons 5.678363e-04   p_joint 3.592982e-03

Joint ci ratio: 4.974256e-02	ci left: 3.508169e-03	ci right 3.687695e-03	k: 6187	n:1720000
Cons ci ratio: 1.251841e-01	ci left: 5.340949e-04	ci right 6.059762e-04	k: 979	n:1720000
KS ci ratio: 2.817995e-03	ci left: 5.286712e-01	ci right 5.301636e-01	k: 910598	n:1720000
SPTBN4   1720000 perm   1644 sec   (1046 perm/sec)   p_kst 5.294174e-01   p_cons 5.691860e-04   p_joint 3.597093e-03

Joint ci ratio: 4.961450e-02	ci left: 3.506158e-03	ci right 3.685106e-03	k: 6219	n:1730000
Cons ci ratio: 1.249295e-01	ci left: 5.332474e-04	ci right 6.048579e-04	k: 983	n:1730000
KS ci ratio: 2.809820e-03	ci left: 5.286767e-01	ci right 5.301648e-01	k: 915898	n:1730000
SPTBN4   1730000 perm   1661 sec   (1042 perm/sec)   p_kst 5.294208e-01   p_cons 5.682081e-04   p_joint 3.594798e-03

Joint ci ratio: 4.948742e-02	ci left: 3.504170e-03	ci right 3.682546e-03	k: 6251	n:1740000
Cons ci ratio: 1.244246e-01	ci left: 5.346371e-04	ci right 6.061227e-04	k: 991	n:1740000
KS ci ratio: 2.801680e-03	ci left: 5.286885e-01	ci right 5.301723e-01	k: 921209	n:1740000
SPTBN4   1740000 perm   1677 sec   (1038 perm/sec)   p_kst 5.294305e-01   p_cons 5.695402e-04   p_joint 3.592529e-03

Joint ci ratio: 4.945222e-02	ci left: 3.489225e-03	ci right 3.666710e-03	k: 6260	n:1750000
Cons ci ratio: 1.239258e-01	ci left: 5.360115e-04	ci right 6.073724e-04	k: 999	n:1750000
KS ci ratio: 2.793623e-03	ci left: 5.286979e-01	ci right 5.301775e-01	k: 926516	n:1750000
SPTBN4   1750000 perm   1693 sec   (1034 perm/sec)   p_kst 5.294377e-01   p_cons 5.708571e-04   p_joint 3.577143e-03

Joint ci ratio: 5.169666e-02	ci left: 3.172056e-03	ci right 3.340949e-03	k: 5730	n:1760000
Cons ci ratio: 1.235557e-01	ci left: 5.362695e-04	ci right 6.074360e-04	k: 1005	n:1760000
KS ci ratio: 2.920673e-03	ci left: 5.050707e-01	ci right 5.065486e-01	k: 890225	n:1760000
SPTBN4   1760000 perm   1710 sec   (1029 perm/sec)   p_kst 5.058097e-01   p_cons 5.710227e-04   p_joint 3.255682e-03

Joint ci ratio: 6.812309e-02	ci left: 1.803610e-03	ci right 1.931362e-03	k: 3304	n:1770000
Cons ci ratio: 1.353013e-01	ci left: 4.419365e-04	ci right 5.066088e-04	k: 838	n:1770000
KS ci ratio: 2.912691e-03	ci left: 5.050247e-01	ci right 5.064984e-01	k: 895198	n:1770000
SPTBN4   1770000 perm   1729 sec   (1024 perm/sec)   p_kst 5.057616e-01   p_cons 4.734463e-04   p_joint 1.866667e-03

Joint ci ratio: 6.792811e-02	ci left: 1.803970e-03	ci right 1.931367e-03	k: 3323	n:1780000
Cons ci ratio: 1.349800e-01	ci left: 4.416249e-04	ci right 5.060858e-04	k: 842	n:1780000
KS ci ratio: 2.904578e-03	ci left: 5.050130e-01	ci right 5.064825e-01	k: 900231	n:1780000
SPTBN4   1780000 perm   1746 sec   (1020 perm/sec)   p_kst 5.057478e-01   p_cons 4.730337e-04   p_joint 1.866854e-03

Joint ci ratio: 6.769423e-02	ci left: 1.806524e-03	ci right 1.933644e-03	k: 3346	n:1790000
Cons ci ratio: 1.348202e-01	ci left: 4.402373e-04	ci right 5.044136e-04	k: 844	n:1790000
KS ci ratio: 2.896607e-03	ci left: 5.049885e-01	ci right 5.064539e-01	k: 905241	n:1790000
SPTBN4   1790000 perm   1762 sec   (1016 perm/sec)   p_kst 5.057212e-01   p_cons 4.715084e-04   p_joint 1.869274e-03

Joint ci ratio: 6.753306e-02	ci left: 1.805226e-03	ci right 1.931941e-03	k: 3362	n:1800000
Cons ci ratio: 1.343441e-01	ci left: 4.410127e-04	ci right 5.050567e-04	k: 850	n:1800000
KS ci ratio: 2.888605e-03	ci left: 5.049810e-01	ci right 5.064423e-01	k: 910281	n:1800000
SPTBN4   1800000 perm   1779 sec   (1012 perm/sec)   p_kst 5.057117e-01   p_cons 4.722222e-04   p_joint 1.867778e-03

Joint ci ratio: 6.758376e-02	ci left: 1.792536e-03	ci right 1.918458e-03	k: 3357	n:1810000
Cons ci ratio: 1.340295e-01	ci left: 4.407119e-04	ci right 5.045505e-04	k: 854	n:1810000
KS ci ratio: 2.880386e-03	ci left: 5.050227e-01	ci right 5.064800e-01	k: 915410	n:1810000
SPTBN4   1810000 perm   1803 sec   (1004 perm/sec)   p_kst 5.057514e-01   p_cons 4.718232e-04   p_joint 1.854696e-03

Joint ci ratio: 6.741337e-02	ci left: 1.791870e-03	ci right 1.917416e-03	k: 3374	n:1820000
Cons ci ratio: 1.337171e-01	ci left: 4.404146e-04	ci right 5.040496e-04	k: 858	n:1820000
KS ci ratio: 2.872343e-03	ci left: 5.050453e-01	ci right 5.064986e-01	k: 920505	n:1820000
SPTBN4   1820000 perm   1821 sec   (1000 perm/sec)   p_kst 5.057720e-01   p_cons 4.714286e-04   p_joint 1.853846e-03

Joint ci ratio: 6.755422e-02	ci left: 1.774557e-03	ci right 1.899159e-03	k: 3360	n:1830000
Cons ci ratio: 1.331755e-01	ci left: 4.417054e-04	ci right 5.052480e-04	k: 865	n:1830000
KS ci ratio: 2.864515e-03	ci left: 5.050420e-01	ci right 5.064913e-01	k: 925553	n:1830000
SPTBN4   1830000 perm   1837 sec   (996 perm/sec)   p_kst 5.057667e-01   p_cons 4.726776e-04   p_joint 1.836066e-03

Joint ci ratio: 6.735409e-02	ci left: 1.775599e-03	ci right 1.899891e-03	k: 3380	n:1840000
Cons ci ratio: 1.330988e-01	ci left: 4.398302e-04	ci right 5.030636e-04	k: 866	n:1840000
KS ci ratio: 2.856912e-03	ci left: 5.050105e-01	ci right 5.064558e-01	k: 930549	n:1840000
SPTBN4   1840000 perm   1854 sec   (992 perm/sec)   p_kst 5.057332e-01   p_cons 4.706522e-04   p_joint 1.836957e-03

Joint ci ratio: 6.717552e-02	ci left: 1.775567e-03	ci right 1.899514e-03	k: 3398	n:1850000
Cons ci ratio: 1.324888e-01	ci left: 4.416334e-04	ci right 5.048122e-04	k: 874	n:1850000
KS ci ratio: 2.849304e-03	ci left: 5.049906e-01	ci right 5.064321e-01	k: 935566	n:1850000
SPTBN4   1850000 perm   1871 sec   (989 perm/sec)   p_kst 5.057114e-01   p_cons 4.724324e-04   p_joint 1.836757e-03

Joint ci ratio: 6.721549e-02	ci left: 1.763906e-03	ci right 1.887116e-03	k: 3394	n:1860000
Cons ci ratio: 1.322623e-01	ci left: 4.408186e-04	ci right 5.037645e-04	k: 877	n:1860000
KS ci ratio: 2.841510e-03	ci left: 5.050145e-01	ci right 5.064521e-01	k: 940664	n:1860000
SPTBN4   1860000 perm   1888 sec   (985 perm/sec)   p_kst 5.057333e-01   p_cons 4.715054e-04   p_joint 1.824731e-03

Joint ci ratio: 6.802349e-02	ci left: 1.712415e-03	ci right 1.833522e-03	k: 3314	n:1870000
Cons ci ratio: 1.318127e-01	ci left: 4.415638e-04	ci right 5.043850e-04	k: 883	n:1870000
KS ci ratio: 2.833936e-03	ci left: 5.050104e-01	ci right 5.064441e-01	k: 945710	n:1870000
SPTBN4   1870000 perm   1905 sec   (982 perm/sec)   p_kst 5.057273e-01   p_cons 4.721925e-04   p_joint 1.772193e-03

Joint ci ratio: 6.474134e-02	ci left: 1.883254e-03	ci right 2.009777e-03	k: 3658	n:1880000
Cons ci ratio: 1.314415e-01	ci left: 4.417871e-04	ci right 5.044492e-04	k: 888	n:1880000
KS ci ratio: 2.826249e-03	ci left: 5.050372e-01	ci right 5.064671e-01	k: 950814	n:1880000
SPTBN4   1880000 perm   1922 sec   (978 perm/sec)   p_kst 5.057521e-01   p_cons 4.723404e-04   p_joint 1.945745e-03

Joint ci ratio: 6.454754e-02	ci left: 1.884742e-03	ci right 2.010972e-03	k: 3680	n:1890000
Cons ci ratio: 1.311468e-01	ci left: 4.414965e-04	ci right 5.039661e-04	k: 892	n:1890000
KS ci ratio: 2.818787e-03	ci left: 5.050346e-01	ci right 5.064607e-01	k: 955863	n:1890000
SPTBN4   1890000 perm   1938 sec   (975 perm/sec)   p_kst 5.057476e-01   p_cons 4.719577e-04   p_joint 1.947090e-03

Joint ci ratio: 6.443397e-02	ci left: 1.881554e-03	ci right 2.007340e-03	k: 3693	n:1900000
Cons ci ratio: 1.309271e-01	ci left: 4.407000e-04	ci right 5.029443e-04	k: 895	n:1900000
KS ci ratio: 2.811530e-03	ci left: 5.050062e-01	ci right 5.064285e-01	k: 960863	n:1900000
SPTBN4   1900000 perm   1955 sec   (972 perm/sec)   p_kst 5.057174e-01   p_cons 4.710526e-04   p_joint 1.943684e-03

Joint ci ratio: 6.434710e-02	ci left: 1.876854e-03	ci right 2.002150e-03	k: 3703	n:1910000
Cons ci ratio: 1.306358e-01	ci left: 4.404184e-04	ci right 5.024738e-04	k: 899	n:1910000
KS ci ratio: 2.804293e-03	ci left: 5.049844e-01	ci right 5.064030e-01	k: 965875	n:1910000
SPTBN4   1910000 perm   1973 sec   (968 perm/sec)   p_kst 5.056937e-01   p_cons 4.706806e-04   p_joint 1.938743e-03

Joint ci ratio: 6.413956e-02	ci left: 1.879378e-03	ci right 2.004423e-03	k: 3727	n:1920000
Cons ci ratio: 1.303465e-01	ci left: 4.401398e-04	ci right 5.020081e-04	k: 903	n:1920000
KS ci ratio: 2.796820e-03	ci left: 5.050149e-01	ci right 5.064298e-01	k: 970987	n:1920000
SPTBN4   1920000 perm   1992 sec   (964 perm/sec)   p_kst 5.057224e-01   p_cons 4.703125e-04   p_joint 1.941146e-03

Joint ci ratio: 6.488527e-02	ci left: 1.826308e-03	ci right 1.949288e-03	k: 3642	n:1930000
Cons ci ratio: 1.302027e-01	ci left: 4.388618e-04	ci right 5.004770e-04	k: 905	n:1930000
KS ci ratio: 2.789667e-03	ci left: 5.049985e-01	ci right 5.064098e-01	k: 976009	n:1930000
SPTBN4   1930000 perm   2011 sec   (960 perm/sec)   p_kst 5.057041e-01   p_cons 4.689119e-04   p_joint 1.887047e-03

Joint ci ratio: 6.476103e-02	ci left: 1.823993e-03	ci right 1.946573e-03	k: 3656	n:1940000
Cons ci ratio: 1.299877e-01	ci left: 4.380957e-04	ci right 4.994940e-04	k: 908	n:1940000
KS ci ratio: 2.782448e-03	ci left: 5.050039e-01	ci right 5.064115e-01	k: 981073	n:1940000
SPTBN4   1940000 perm   2029 sec   (956 perm/sec)   p_kst 5.057077e-01   p_cons 4.680412e-04   p_joint 1.884536e-03

Joint ci ratio: 6.465515e-02	ci left: 1.820694e-03	ci right 1.942844e-03	k: 3668	n:1950000
Cons ci ratio: 1.299164e-01	ci left: 4.363452e-04	ci right 4.974620e-04	k: 909	n:1950000
KS ci ratio: 2.775435e-03	ci left: 5.049821e-01	ci right 5.063861e-01	k: 986084	n:1950000
SPTBN4   1950000 perm   2047 sec   (953 perm/sec)   p_kst 5.056841e-01   p_cons 4.661538e-04   p_joint 1.881026e-03

Joint ci ratio: 6.452345e-02	ci left: 1.818934e-03	ci right 1.940709e-03	k: 3683	n:1960000
Cons ci ratio: 1.294195e-01	ci left: 4.375745e-04	ci right 4.986111e-04	k: 916	n:1960000
KS ci ratio: 2.768388e-03	ci left: 5.049763e-01	ci right 5.063767e-01	k: 991126	n:1960000
SPTBN4   1960000 perm   2066 sec   (949 perm/sec)   p_kst 5.056765e-01   p_cons 4.673469e-04   p_joint 1.879082e-03

Joint ci ratio: 6.436641e-02	ci left: 1.818691e-03	ci right 1.940142e-03	k: 3701	n:1970000
Cons ci ratio: 1.289981e-01	ci left: 4.383006e-04	ci right 4.992241e-04	k: 922	n:1970000
KS ci ratio: 2.761503e-03	ci left: 5.049508e-01	ci right 5.063476e-01	k: 996129	n:1970000
SPTBN4   1970000 perm   2084 sec   (945 perm/sec)   p_kst 5.056492e-01   p_cons 4.680203e-04   p_joint 1.878680e-03

Joint ci ratio: 6.416732e-02	ci left: 1.820935e-03	ci right 1.942146e-03	k: 3724	n:1980000
Cons ci ratio: 1.287195e-01	ci left: 4.380420e-04	ci right 4.987881e-04	k: 926	n:1980000
KS ci ratio: 2.754481e-03	ci left: 5.049599e-01	ci right 5.063532e-01	k: 1001200	n:1980000
SPTBN4   1980000 perm   2102 sec   (942 perm/sec)   p_kst 5.056566e-01   p_cons 4.676768e-04   p_joint 1.880808e-03

Joint ci ratio: 6.415037e-02	ci left: 1.812773e-03	ci right 1.933407e-03	k: 3726	n:1990000
Cons ci ratio: 1.285810e-01	ci left: 4.368135e-04	ci right 4.973190e-04	k: 928	n:1990000
KS ci ratio: 2.747707e-03	ci left: 5.049332e-01	ci right 5.063230e-01	k: 1006200	n:1990000
SPTBN4   1990000 perm   2122 sec   (938 perm/sec)   p_kst 5.056281e-01   p_cons 4.663317e-04   p_joint 1.872362e-03

Joint ci ratio: 6.123219e-02	ci left: 1.982371e-03	ci right 2.108078e-03	k: 4089	n:2000000
Cons ci ratio: 1.283051e-01	ci left: 4.365651e-04	ci right 4.968966e-04	k: 932	n:2000000
KS ci ratio: 2.740849e-03	ci left: 5.049313e-01	ci right 5.063176e-01	k: 1011249	n:2000000
SPTBN4   2000000 perm   2143 sec   (933 perm/sec)   p_kst 5.056245e-01   p_cons 4.660000e-04   p_joint 2.044500e-03

Joint ci ratio: 6.136796e-02	ci left: 1.963690e-03	ci right 2.088498e-03	k: 4071	n:2010000
Cons ci ratio: 1.278264e-01	ci left: 4.377642e-04	ci right 4.980186e-04	k: 939	n:2010000
KS ci ratio: 2.733947e-03	ci left: 5.049469e-01	ci right 5.063297e-01	k: 1016333	n:2010000
SPTBN4   2010000 perm   2160 sec   (931 perm/sec)   p_kst 5.056383e-01   p_cons 4.671642e-04   p_joint 2.025373e-03

Joint ci ratio: 6.190372e-02	ci left: 1.919848e-03	ci right 2.042973e-03	k: 4001	n:2020000
Cons ci ratio: 1.274203e-01	ci left: 4.384725e-04	ci right 4.986182e-04	k: 945	n:2020000
KS ci ratio: 2.727265e-03	ci left: 5.049316e-01	ci right 5.063110e-01	k: 1021355	n:2020000
SPTBN4   2020000 perm   2178 sec   (928 perm/sec)   p_kst 5.056213e-01   p_cons 4.678218e-04   p_joint 1.980693e-03

Joint ci ratio: 6.174193e-02	ci left: 1.920575e-03	ci right 2.043414e-03	k: 4022	n:2030000
Cons ci ratio: 1.268848e-01	ci left: 4.401281e-04	ci right 5.002281e-04	k: 953	n:2030000
KS ci ratio: 2.720405e-03	ci left: 5.049578e-01	ci right 5.063338e-01	k: 1026461	n:2030000
SPTBN4   2030000 perm   2195 sec   (925 perm/sec)   p_kst 5.056458e-01   p_cons 4.694581e-04   p_joint 1.981281e-03

Joint ci ratio: 6.158902e-02	ci left: 1.920814e-03	ci right 2.043352e-03	k: 4042	n:2040000
Cons ci ratio: 1.262904e-01	ci left: 4.422427e-04	ci right 5.023274e-04	k: 962	n:2040000
KS ci ratio: 2.713600e-03	ci left: 5.049833e-01	ci right 5.063559e-01	k: 1031566	n:2040000
SPTBN4   2040000 perm   2213 sec   (922 perm/sec)   p_kst 5.056696e-01   p_cons 4.715686e-04   p_joint 1.981373e-03

Joint ci ratio: 6.142967e-02	ci left: 1.921530e-03	ci right 2.043786e-03	k: 4063	n:2050000
Cons ci ratio: 1.262250e-01	ci left: 4.405578e-04	ci right 5.003802e-04	k: 963	n:2050000
KS ci ratio: 2.707071e-03	ci left: 5.049671e-01	ci right 5.063363e-01	k: 1036586	n:2050000
SPTBN4   2050000 perm   2232 sec   (919 perm/sec)   p_kst 5.056517e-01   p_cons 4.697561e-04   p_joint 1.981951e-03

Joint ci ratio: 6.136193e-02	ci left: 1.916504e-03	ci right 2.038301e-03	k: 4072	n:2060000
Cons ci ratio: 1.257691e-01	ci left: 4.417102e-04	ci right 5.014563e-04	k: 970	n:2060000
KS ci ratio: 2.700769e-03	ci left: 5.049175e-01	ci right 5.062835e-01	k: 1041537	n:2060000
SPTBN4   2060000 perm   2253 sec   (914 perm/sec)   p_kst 5.056005e-01   p_cons 4.708738e-04   p_joint 1.976699e-03

Joint ci ratio: 6.196730e-02	ci left: 1.869668e-03	ci right 1.989703e-03	k: 3993	n:2070000
Cons ci ratio: 1.255753e-01	ci left: 4.409800e-04	ci right 5.005286e-04	k: 973	n:2070000
KS ci ratio: 2.694165e-03	ci left: 5.049327e-01	ci right 5.062953e-01	k: 1046621	n:2070000
SPTBN4   2070000 perm   2271 sec   (912 perm/sec)   p_kst 5.056140e-01   p_cons 4.700483e-04   p_joint 1.928986e-03

Joint ci ratio: 6.182815e-02	ci left: 1.869199e-03	ci right 1.988925e-03	k: 4011	n:2080000
Cons ci ratio: 1.251903e-01	ci left: 4.416541e-04	ci right 5.010973e-04	k: 979	n:2080000
KS ci ratio: 2.687776e-03	ci left: 5.049165e-01	ci right 5.062758e-01	k: 1051640	n:2080000
SPTBN4   2080000 perm   2290 sec   (908 perm/sec)   p_kst 5.055962e-01   p_cons 4.706731e-04   p_joint 1.928365e-03

Joint ci ratio: 6.170528e-02	ci left: 1.867793e-03	ci right 1.987182e-03	k: 4027	n:2090000
Cons ci ratio: 1.249991e-01	ci left: 4.409314e-04	ci right 5.001800e-04	k: 982	n:2090000
KS ci ratio: 2.681272e-03	ci left: 5.049305e-01	ci right 5.062867e-01	k: 1056722	n:2090000
SPTBN4   2090000 perm   2308 sec   (905 perm/sec)   p_kst 5.056086e-01   p_cons 4.698565e-04   p_joint 1.926794e-03

Joint ci ratio: 6.159840e-02	ci left: 1.865463e-03	ci right 1.984489e-03	k: 4041	n:2100000
Cons ci ratio: 1.248723e-01	ci left: 4.397543e-04	ci right 4.987803e-04	k: 984	n:2100000
KS ci ratio: 2.674669e-03	ci left: 5.049716e-01	ci right 5.063245e-01	k: 1061861	n:2100000
SPTBN4   2100000 perm   2326 sec   (903 perm/sec)   p_kst 5.056481e-01   p_cons 4.685714e-04   p_joint 1.924286e-03

Joint ci ratio: 6.147689e-02	ci left: 1.864088e-03	ci right 1.982783e-03	k: 4057	n:2110000
Cons ci ratio: 1.246826e-01	ci left: 4.390475e-04	ci right 4.978826e-04	k: 987	n:2110000
KS ci ratio: 2.668287e-03	ci left: 5.049801e-01	ci right 5.063298e-01	k: 1066932	n:2110000
SPTBN4   2110000 perm   2344 sec   (900 perm/sec)   p_kst 5.056550e-01   p_cons 4.677725e-04   p_joint 1.922749e-03

Joint ci ratio: 6.160660e-02	ci left: 1.847399e-03	ci right 1.965289e-03	k: 4040	n:2120000
Cons ci ratio: 1.242432e-01	ci left: 4.401757e-04	ci right 4.989387e-04	k: 994	n:2120000
KS ci ratio: 2.662043e-03	ci left: 5.049711e-01	ci right 5.063176e-01	k: 1071966	n:2120000
SPTBN4   2120000 perm   2363 sec   (897 perm/sec)   p_kst 5.056443e-01   p_cons 4.688679e-04   p_joint 1.905660e-03

Joint ci ratio: 6.146228e-02	ci left: 1.847509e-03	ci right 1.965120e-03	k: 4059	n:2130000
Cons ci ratio: 1.238083e-01	ci left: 4.412936e-04	ci right 4.999846e-04	k: 1001	n:2130000
KS ci ratio: 2.655882e-03	ci left: 5.049546e-01	ci right 5.062979e-01	k: 1076984	n:2130000
SPTBN4   2130000 perm   2381 sec   (894 perm/sec)   p_kst 5.056263e-01   p_cons 4.699531e-04   p_joint 1.905634e-03

Joint ci ratio: 6.132650e-02	ci left: 1.847158e-03	ci right 1.964477e-03	k: 4077	n:2140000
Cons ci ratio: 1.236235e-01	ci left: 4.405899e-04	ci right 4.990934e-04	k: 1004	n:2140000
KS ci ratio: 2.649519e-03	ci left: 5.049846e-01	ci right 5.063248e-01	k: 1082101	n:2140000
SPTBN4   2140000 perm   2400 sec   (892 perm/sec)   p_kst 5.056547e-01   p_cons 4.691589e-04   p_joint 1.905140e-03

Joint ci ratio: 6.116917e-02	ci left: 1.848184e-03	ci right 1.965257e-03	k: 4098	n:2150000
Cons ci ratio: 1.232561e-01	ci left: 4.412452e-04	ci right 4.996489e-04	k: 1010	n:2150000
KS ci ratio: 2.643458e-03	ci left: 5.049659e-01	ci right 5.063029e-01	k: 1087114	n:2150000
SPTBN4   2150000 perm   2418 sec   (889 perm/sec)   p_kst 5.056344e-01   p_cons 4.697674e-04   p_joint 1.906047e-03

Joint ci ratio: 5.990865e-02	ci left: 1.918966e-03	ci right 2.037931e-03	k: 4272	n:2160000
Cons ci ratio: 1.230130e-01	ci left: 4.409972e-04	ci right 4.992446e-04	k: 1014	n:2160000
KS ci ratio: 2.637442e-03	ci left: 5.049464e-01	ci right 5.062804e-01	k: 1092125	n:2160000
SPTBN4   2160000 perm   2437 sec   (886 perm/sec)   p_kst 5.056134e-01   p_cons 4.694444e-04   p_joint 1.977778e-03

Joint ci ratio: 5.978289e-02	ci left: 1.918294e-03	ci right 2.036959e-03	k: 4290	n:2170000
Cons ci ratio: 1.228920e-01	ci left: 4.398583e-04	ci right 4.978939e-04	k: 1016	n:2170000
KS ci ratio: 2.631220e-03	ci left: 5.049742e-01	ci right 5.063051e-01	k: 1097238	n:2170000
SPTBN4   2170000 perm   2456 sec   (883 perm/sec)   p_kst 5.056396e-01   p_cons 4.682028e-04   p_joint 1.976959e-03

Joint ci ratio: 5.969263e-02	ci left: 1.915368e-03	ci right 2.033667e-03	k: 4303	n:2180000
Cons ci ratio: 1.226511e-01	ci left: 4.396191e-04	ci right 4.975012e-04	k: 1020	n:2180000
KS ci ratio: 2.625119e-03	ci left: 5.049870e-01	ci right 5.063148e-01	k: 1102319	n:2180000
SPTBN4   2180000 perm   2475 sec   (881 perm/sec)   p_kst 5.056509e-01   p_cons 4.678899e-04   p_joint 1.973853e-03

Joint ci ratio: 5.952683e-02	ci left: 1.917418e-03	ci right 2.035503e-03	k: 4327	n:2190000
Cons ci ratio: 1.223518e-01	ci left: 4.398248e-04	ci right 4.975825e-04	k: 1025	n:2190000
KS ci ratio: 2.619252e-03	ci left: 5.049632e-01	ci right 5.062880e-01	k: 1107320	n:2190000
SPTBN4   2190000 perm   2495 sec   (878 perm/sec)   p_kst 5.056256e-01   p_cons 4.680365e-04   p_joint 1.975799e-03

Joint ci ratio: 5.936925e-02	ci left: 1.919002e-03	ci right 2.036861e-03	k: 4350	n:2200000
Cons ci ratio: 1.221141e-01	ci left: 4.395882e-04	ci right 4.971945e-04	k: 1029	n:2200000
KS ci ratio: 2.613129e-03	ci left: 5.049959e-01	ci right 5.063177e-01	k: 1112445	n:2200000
SPTBN4   2200000 perm   2515 sec   (875 perm/sec)   p_kst 5.056568e-01   p_cons 4.677273e-04   p_joint 1.977273e-03

Joint ci ratio: 5.961715e-02	ci left: 1.894270e-03	ci right 2.011113e-03	k: 4314	n:2210000
Cons ci ratio: 1.218777e-01	ci left: 4.393538e-04	ci right 4.968099e-04	k: 1033	n:2210000
KS ci ratio: 2.607074e-03	ci left: 5.050234e-01	ci right 5.063422e-01	k: 1117559	n:2210000
SPTBN4   2210000 perm   2535 sec   (872 perm/sec)   p_kst 5.056828e-01   p_cons 4.674208e-04   p_joint 1.952036e-03

Joint ci ratio: 5.947945e-02	ci left: 1.894612e-03	ci right 2.011197e-03	k: 4334	n:2220000
Cons ci ratio: 1.215255e-01	ci left: 4.399952e-04	ci right 4.973570e-04	k: 1039	n:2220000
KS ci ratio: 2.601041e-03	ci left: 5.050547e-01	ci right 5.063705e-01	k: 1122682	n:2220000
SPTBN4   2220000 perm   2554 sec   (869 perm/sec)   p_kst 5.057126e-01   p_cons 4.680180e-04   p_joint 1.952252e-03

Joint ci ratio: 5.926096e-02	ci left: 1.900253e-03	ci right 2.016741e-03	k: 4366	n:2230000
Cons ci ratio: 1.211185e-01	ci left: 4.410659e-04	ci right 4.983609e-04	k: 1046	n:2230000
KS ci ratio: 2.595100e-03	ci left: 5.050759e-01	ci right 5.063887e-01	k: 1127783	n:2230000
SPTBN4   2230000 perm   2575 sec   (866 perm/sec)   p_kst 5.057323e-01   p_cons 4.690583e-04   p_joint 1.957848e-03

Joint ci ratio: 5.910548e-02	ci left: 1.901886e-03	ci right 2.018158e-03	k: 4389	n:2240000
Cons ci ratio: 1.206584e-01	ci left: 4.425603e-04	ci right 4.998154e-04	k: 1054	n:2240000
KS ci ratio: 2.589293e-03	ci left: 5.050790e-01	ci right 5.063889e-01	k: 1132844	n:2240000
SPTBN4   2240000 perm   2594 sec   (863 perm/sec)   p_kst 5.057339e-01   p_cons 4.705357e-04   p_joint 1.959375e-03

Joint ci ratio: 5.896459e-02	ci left: 1.902629e-03	ci right 2.018659e-03	k: 4410	n:2250000
Cons ci ratio: 1.202600e-01	ci left: 4.436108e-04	ci right 5.007988e-04	k: 1061	n:2250000
KS ci ratio: 2.583547e-03	ci left: 5.050776e-01	ci right 5.063846e-01	k: 1137895	n:2250000
SPTBN4   2250000 perm   2615 sec   (861 perm/sec)   p_kst 5.057311e-01   p_cons 4.715556e-04   p_joint 1.960000e-03

Joint ci ratio: 5.875833e-02	ci left: 1.907725e-03	ci right 2.023645e-03	k: 4441	n:2260000
Cons ci ratio: 1.199779e-01	ci left: 4.437938e-04	ci right 5.008617e-04	k: 1066	n:2260000
KS ci ratio: 2.577716e-03	ci left: 5.051002e-01	ci right 5.064043e-01	k: 1143000	n:2260000
SPTBN4   2260000 perm   2635 sec   (858 perm/sec)   p_kst 5.057522e-01   p_cons 4.716814e-04   p_joint 1.965044e-03

Joint ci ratio: 5.856734e-02	ci left: 1.911909e-03	ci right 2.027693e-03	k: 4470	n:2270000
Cons ci ratio: 1.196419e-01	ci left: 4.444027e-04	ci right 5.013776e-04	k: 1072	n:2270000
KS ci ratio: 2.571985e-03	ci left: 5.051106e-01	ci right 5.064118e-01	k: 1148078	n:2270000
SPTBN4   2270000 perm   2655 sec   (855 perm/sec)   p_kst 5.057612e-01   p_cons 4.722467e-04   p_joint 1.969163e-03

Joint ci ratio: 5.870590e-02	ci left: 1.894448e-03	ci right 2.009455e-03	k: 4449	n:2280000
Cons ci ratio: 1.191983e-01	ci left: 4.458576e-04	ci right 5.027921e-04	k: 1080	n:2280000
KS ci ratio: 2.566140e-03	ci left: 5.051508e-01	ci right 5.064492e-01	k: 1153224	n:2280000
SPTBN4   2280000 perm   2675 sec   (852 perm/sec)   p_kst 5.058000e-01   p_cons 4.736842e-04   p_joint 1.951316e-03

Joint ci ratio: 5.856129e-02	ci left: 1.895641e-03	ci right 2.010428e-03	k: 4471	n:2290000
Cons ci ratio: 1.189784e-01	ci left: 4.456053e-04	ci right 5.023952e-04	k: 1084	n:2290000
KS ci ratio: 2.560627e-03	ci left: 5.051335e-01	ci right 5.064290e-01	k: 1158239	n:2290000
SPTBN4   2290000 perm   2695 sec   (850 perm/sec)   p_kst 5.057812e-01   p_cons 4.733624e-04   p_joint 1.952402e-03

Joint ci ratio: 5.772684e-02	ci left: 1.943101e-03	ci right 2.059029e-03	k: 4601	n:2300000
Cons ci ratio: 1.185421e-01	ci left: 4.470428e-04	ci right 5.037924e-04	k: 1092	n:2300000
KS ci ratio: 2.555021e-03	ci left: 5.051415e-01	ci right 5.064342e-01	k: 1163312	n:2300000
SPTBN4   2300000 perm   2715 sec   (847 perm/sec)   p_kst 5.057878e-01   p_cons 4.747826e-04   p_joint 2.000435e-03

Joint ci ratio: 5.760805e-02	ci left: 1.942795e-03	ci right 2.058459e-03	k: 4620	n:2310000
Cons ci ratio: 1.183798e-01	ci left: 4.463678e-04	ci right 5.029487e-04	k: 1095	n:2310000
KS ci ratio: 2.549336e-03	ci left: 5.051719e-01	ci right 5.064618e-01	k: 1168437	n:2310000
SPTBN4   2310000 perm   2736 sec   (844 perm/sec)   p_kst 5.058169e-01   p_cons 4.740260e-04   p_joint 2.000000e-03

Joint ci ratio: 5.751484e-02	ci left: 1.940794e-03	ci right 2.056145e-03	k: 4635	n:2320000
Cons ci ratio: 1.181644e-01	ci left: 4.461169e-04	ci right 5.025559e-04	k: 1099	n:2320000
KS ci ratio: 2.543757e-03	ci left: 5.051888e-01	ci right 5.064759e-01	k: 1173531	n:2320000
SPTBN4   2320000 perm   2757 sec   (842 perm/sec)   p_kst 5.058323e-01   p_cons 4.737069e-04   p_joint 1.997845e-03

Joint ci ratio: 5.738500e-02	ci left: 1.941348e-03	ci right 2.056462e-03	k: 4656	n:2330000
Cons ci ratio: 1.177370e-01	ci left: 4.475344e-04	ci right 5.039337e-04	k: 1107	n:2330000
KS ci ratio: 2.538498e-03	ci left: 5.051497e-01	ci right 5.064340e-01	k: 1178495	n:2330000
SPTBN4   2330000 perm   2777 sec   (839 perm/sec)   p_kst 5.057918e-01   p_cons 4.751073e-04   p_joint 1.998283e-03

Joint ci ratio: 5.725604e-02	ci left: 1.941897e-03	ci right 2.056777e-03	k: 4677	n:2340000
Cons ci ratio: 1.173141e-01	ci left: 4.489402e-04	ci right 5.052994e-04	k: 1115	n:2340000
KS ci ratio: 2.533150e-03	ci left: 5.051348e-01	ci right 5.064164e-01	k: 1183515	n:2340000
SPTBN4   2340000 perm   2798 sec   (836 perm/sec)   p_kst 5.057756e-01   p_cons 4.764957e-04   p_joint 1.998718e-03

Joint ci ratio: 5.708536e-02	ci left: 1.945378e-03	ci right 2.060110e-03	k: 4705	n:2350000
Cons ci ratio: 1.168958e-01	ci left: 4.503344e-04	ci right 5.066531e-04	k: 1123	n:2350000
KS ci ratio: 2.527688e-03	ci left: 5.051495e-01	ci right 5.064284e-01	k: 1188604	n:2350000
SPTBN4   2350000 perm   2819 sec   (834 perm/sec)   p_kst 5.057889e-01   p_cons 4.778723e-04   p_joint 2.002128e-03

Joint ci ratio: 5.693427e-02	ci left: 1.947577e-03	ci right 2.062125e-03	k: 4730	n:2360000
Cons ci ratio: 1.167402e-01	ci left: 4.496602e-04	ci right 5.058146e-04	k: 1126	n:2360000
KS ci ratio: 2.522173e-03	ci left: 5.051814e-01	ci right 5.064576e-01	k: 1193734	n:2360000
SPTBN4   2360000 perm   2840 sec   (831 perm/sec)   p_kst 5.058195e-01   p_cons 4.771186e-04   p_joint 2.004237e-03

Joint ci ratio: 5.725064e-02	ci left: 1.917731e-03	ci right 2.031171e-03	k: 4678	n:2370000
Cons ci ratio: 1.166368e-01	ci left: 4.485822e-04	ci right 5.045489e-04	k: 1128	n:2370000
KS ci ratio: 2.516970e-03	ci left: 5.051582e-01	ci right 5.064317e-01	k: 1198734	n:2370000
SPTBN4   2370000 perm   2860 sec   (829 perm/sec)   p_kst 5.057949e-01   p_cons 4.759494e-04   p_joint 1.973840e-03

Joint ci ratio: 5.712867e-02	ci left: 1.917957e-03	ci right 2.031160e-03	k: 4698	n:2380000
Cons ci ratio: 1.163281e-01	ci left: 4.491449e-04	ci right 5.050233e-04	k: 1134	n:2380000
KS ci ratio: 2.511547e-03	ci left: 5.051852e-01	ci right 5.064560e-01	k: 1203853	n:2380000
SPTBN4   2380000 perm   2881 sec   (826 perm/sec)   p_kst 5.058206e-01   p_cons 4.764706e-04   p_joint 1.973950e-03

Joint ci ratio: 5.700142e-02	ci left: 1.918593e-03	ci right 2.031573e-03	k: 4719	n:2390000
Cons ci ratio: 1.160727e-01	ci left: 4.492969e-04	ci right 5.050631e-04	k: 1139	n:2390000
KS ci ratio: 2.506330e-03	ci left: 5.051781e-01	ci right 5.064462e-01	k: 1208891	n:2390000
SPTBN4   2390000 perm   2902 sec   (824 perm/sec)   p_kst 5.058121e-01   p_cons 4.765690e-04   p_joint 1.974477e-03

Joint ci ratio: 5.580601e-02	ci left: 1.994402e-03	ci right 2.109304e-03	k: 4923	n:2400000
Cons ci ratio: 1.157179e-01	ci left: 4.502570e-04	ci right 5.059598e-04	k: 1146	n:2400000
KS ci ratio: 2.501128e-03	ci left: 5.051743e-01	ci right 5.064398e-01	k: 1213937	n:2400000
SPTBN4   2400000 perm   2923 sec   (821 perm/sec)   p_kst 5.058071e-01   p_cons 4.775000e-04   p_joint 2.051250e-03

Joint ci ratio: 5.563667e-02	ci left: 1.998402e-03	ci right 2.113174e-03	k: 4953	n:2410000
Cons ci ratio: 1.154665e-01	ci left: 4.504034e-04	ci right 5.059951e-04	k: 1151	n:2410000
KS ci ratio: 2.495918e-03	ci left: 5.051789e-01	ci right 5.064418e-01	k: 1219003	n:2410000
SPTBN4   2410000 perm   2944 sec   (819 perm/sec)   p_kst 5.058104e-01   p_cons 4.775934e-04   p_joint 2.055187e-03

Joint ci ratio: 5.553031e-02	ci left: 1.997886e-03	ci right 2.112402e-03	k: 4972	n:2420000
Cons ci ratio: 1.152167e-01	ci left: 4.505487e-04	ci right 5.060299e-04	k: 1156	n:2420000
KS ci ratio: 2.490858e-03	ci left: 5.051595e-01	ci right 5.064198e-01	k: 1224011	n:2420000
SPTBN4   2420000 perm   2965 sec   (816 perm/sec)   p_kst 5.057897e-01   p_cons 4.776860e-04   p_joint 2.054545e-03

Joint ci ratio: 5.433384e-02	ci left: 2.079364e-03	ci right 2.195902e-03	k: 5193	n:2430000
Cons ci ratio: 1.147711e-01	ci left: 4.522918e-04	ci right 5.077576e-04	k: 1165	n:2430000
KS ci ratio: 2.485709e-03	ci left: 5.051646e-01	ci right 5.064222e-01	k: 1229078	n:2430000
SPTBN4   2430000 perm   2987 sec   (814 perm/sec)   p_kst 5.057934e-01   p_cons 4.794239e-04   p_joint 2.137037e-03

Joint ci ratio: 5.418270e-02	ci left: 2.082566e-03	ci right 2.198948e-03	k: 5222	n:2440000
Cons ci ratio: 1.144281e-01	ci left: 4.532248e-04	ci right 5.086277e-04	k: 1172	n:2440000
KS ci ratio: 2.480767e-03	ci left: 5.051343e-01	ci right 5.063894e-01	k: 1234059	n:2440000
SPTBN4   2440000 perm   3008 sec   (811 perm/sec)   p_kst 5.057619e-01   p_cons 4.803279e-04   p_joint 2.140164e-03

Joint ci ratio: 5.407411e-02	ci left: 2.082521e-03	ci right 2.198660e-03	k: 5243	n:2450000
Cons ci ratio: 1.143794e-01	ci left: 4.517714e-04	ci right 5.069715e-04	k: 1173	n:2450000
KS ci ratio: 2.475781e-03	ci left: 5.051190e-01	ci right 5.063715e-01	k: 1239076	n:2450000
SPTBN4   2450000 perm   3029 sec   (809 perm/sec)   p_kst 5.057453e-01   p_cons 4.787755e-04   p_joint 2.140000e-03

Joint ci ratio: 5.412090e-02	ci left: 2.070446e-03	ci right 2.186015e-03	k: 5234	n:2460000
Cons ci ratio: 1.140399e-01	ci left: 4.526992e-04	ci right 5.078374e-04	k: 1180	n:2460000
KS ci ratio: 2.470604e-03	ci left: 5.051486e-01	ci right 5.063985e-01	k: 1244203	n:2460000
SPTBN4   2460000 perm   3051 sec   (806 perm/sec)   p_kst 5.057736e-01   p_cons 4.796748e-04   p_joint 2.127642e-03

Joint ci ratio: 5.401268e-02	ci left: 2.070451e-03	ci right 2.185782e-03	k: 5255	n:2470000
Cons ci ratio: 1.138954e-01	ci left: 4.520463e-04	ci right 5.070306e-04	k: 1183	n:2470000
KS ci ratio: 2.465577e-03	ci left: 5.051540e-01	ci right 5.064014e-01	k: 1249271	n:2470000
SPTBN4   2470000 perm   3072 sec   (804 perm/sec)   p_kst 5.057777e-01   p_cons 4.789474e-04   p_joint 2.127530e-03

Joint ci ratio: 5.201768e-02	ci left: 2.225239e-03	ci right 2.344476e-03	k: 5665	n:2480000
Cons ci ratio: 1.135124e-01	ci left: 4.533576e-04	ci right 5.083036e-04	k: 1191	n:2480000
KS ci ratio: 2.460752e-03	ci left: 5.051247e-01	ci right 5.063696e-01	k: 1254253	n:2480000
SPTBN4   2480000 perm   3094 sec   (802 perm/sec)   p_kst 5.057472e-01   p_cons 4.802419e-04   p_joint 2.284274e-03

Joint ci ratio: 5.190785e-02	ci left: 2.225816e-03	ci right 2.344825e-03	k: 5689	n:2490000
Cons ci ratio: 1.133699e-01	ci left: 4.527075e-04	ci right 5.075012e-04	k: 1194	n:2490000
KS ci ratio: 2.455852e-03	ci left: 5.051165e-01	ci right 5.063589e-01	k: 1259287	n:2490000
SPTBN4   2490000 perm   3116 sec   (799 perm/sec)   p_kst 5.057378e-01   p_cons 4.795181e-04   p_joint 2.284739e-03

Joint ci ratio: 5.228707e-02	ci left: 2.184538e-03	ci right 2.302219e-03	k: 5607	n:2500000
Cons ci ratio: 1.130393e-01	ci left: 4.536174e-04	ci right 5.083504e-04	k: 1201	n:2500000
KS ci ratio: 2.451114e-03	ci left: 5.050812e-01	ci right 5.063211e-01	k: 1264253	n:2500000
SPTBN4   2500000 perm   3138 sec   (797 perm/sec)   p_kst 5.057012e-01   p_cons 4.804000e-04   p_joint 2.242800e-03

Joint ci ratio: 4.904516e-02	ci left: 2.476374e-03	ci right 2.601272e-03	k: 6371	n:2510000
Cons ci ratio: 1.128517e-01	ci left: 4.533588e-04	ci right 5.079638e-04	k: 1205	n:2510000
KS ci ratio: 2.446278e-03	ci left: 5.050721e-01	ci right 5.063095e-01	k: 1269284	n:2510000
SPTBN4   2510000 perm   3161 sec   (794 perm/sec)   p_kst 5.056908e-01   p_cons 4.800797e-04   p_joint 2.538247e-03

Joint ci ratio: 4.943978e-02	ci left: 2.426960e-03	ci right 2.550378e-03	k: 6270	n:2520000
Cons ci ratio: 1.125255e-01	ci left: 4.542593e-04	ci right 5.088041e-04	k: 1212	n:2520000
KS ci ratio: 2.441318e-03	ci left: 5.050940e-01	ci right 5.063290e-01	k: 1274393	n:2520000
SPTBN4   2520000 perm   3184 sec   (792 perm/sec)   p_kst 5.057115e-01   p_cons 4.809524e-04   p_joint 2.488095e-03

Joint ci ratio: 4.932582e-02	ci left: 2.428688e-03	ci right 2.551902e-03	k: 6299	n:2530000
Cons ci ratio: 1.124329e-01	ci left: 4.532320e-04	ci right 5.076057e-04	k: 1214	n:2530000
KS ci ratio: 2.436354e-03	ci left: 5.051229e-01	ci right 5.063554e-01	k: 1279520	n:2530000
SPTBN4   2530000 perm   3206 sec   (789 perm/sec)   p_kst 5.057391e-01   p_cons 4.798419e-04   p_joint 2.489723e-03

Joint ci ratio: 4.923995e-02	ci left: 2.427681e-03	ci right 2.550623e-03	k: 6321	n:2540000
Cons ci ratio: 1.122023e-01	ci left: 4.533608e-04	ci right 5.076311e-04	k: 1219	n:2540000
KS ci ratio: 2.431319e-03	ci left: 5.051723e-01	ci right 5.064024e-01	k: 1284700	n:2540000
SPTBN4   2540000 perm   3228 sec   (787 perm/sec)   p_kst 5.057874e-01   p_cons 4.799213e-04   p_joint 2.488583e-03

Joint ci ratio: 4.917395e-02	ci left: 2.424745e-03	ci right 2.547369e-03	k: 6338	n:2550000
Cons ci ratio: 1.120188e-01	ci left: 4.531076e-04	ci right 5.072530e-04	k: 1223	n:2550000
KS ci ratio: 2.426691e-03	ci left: 5.051438e-01	ci right 5.063715e-01	k: 1289682	n:2550000
SPTBN4   2550000 perm   3250 sec   (784 perm/sec)   p_kst 5.057576e-01   p_cons 4.796078e-04   p_joint 2.485490e-03

Joint ci ratio: 4.928343e-02	ci left: 2.404470e-03	ci right 2.526347e-03	k: 6310	n:2560000
Cons ci ratio: 1.118363e-01	ci left: 4.528564e-04	ci right 5.068777e-04	k: 1227	n:2560000
KS ci ratio: 2.421889e-03	ci left: 5.051569e-01	ci right 5.063822e-01	k: 1294770	n:2560000
SPTBN4   2560000 perm   3273 sec   (782 perm/sec)   p_kst 5.057695e-01   p_cons 4.792969e-04   p_joint 2.464844e-03

Joint ci ratio: 4.918221e-02	ci left: 2.405106e-03	ci right 2.526758e-03	k: 6336	n:2570000
Cons ci ratio: 1.116546e-01	ci left: 4.526072e-04	ci right 5.065053e-04	k: 1231	n:2570000
KS ci ratio: 2.417136e-03	ci left: 5.051656e-01	ci right 5.063885e-01	k: 1299847	n:2570000
SPTBN4   2570000 perm   3296 sec   (780 perm/sec)   p_kst 5.057770e-01   p_cons 4.789883e-04   p_joint 2.465370e-03

Joint ci ratio: 4.813164e-02	ci left: 2.502611e-03	ci right 2.626416e-03	k: 6615	n:2580000
Cons ci ratio: 1.114287e-01	ci left: 4.527369e-04	ci right 5.065342e-04	k: 1236	n:2580000
KS ci ratio: 2.412514e-03	ci left: 5.051529e-01	ci right 5.063734e-01	k: 1304869	n:2580000
SPTBN4   2580000 perm   3318 sec   (778 perm/sec)   p_kst 5.057632e-01   p_cons 4.790698e-04   p_joint 2.563953e-03

Joint ci ratio: 4.805185e-02	ci left: 2.501341e-03	ci right 2.624872e-03	k: 6637	n:2590000
Cons ci ratio: 1.113388e-01	ci left: 4.517395e-04	ci right 5.053722e-04	k: 1238	n:2590000
KS ci ratio: 2.407872e-03	ci left: 5.051500e-01	ci right 5.063682e-01	k: 1309916	n:2590000
SPTBN4   2590000 perm   3340 sec   (775 perm/sec)   p_kst 5.057591e-01   p_cons 4.779923e-04   p_joint 2.562548e-03

Joint ci ratio: 4.794720e-02	ci left: 2.502740e-03	ci right 2.626064e-03	k: 6666	n:2600000
Cons ci ratio: 1.108921e-01	ci left: 4.537413e-04	ci right 5.073814e-04	k: 1248	n:2600000
KS ci ratio: 2.403248e-03	ci left: 5.051490e-01	ci right 5.063648e-01	k: 1314968	n:2600000
SPTBN4   2600000 perm   3363 sec   (773 perm/sec)   p_kst 5.057569e-01   p_cons 4.800000e-04   p_joint 2.563846e-03

Joint ci ratio: 4.784681e-02	ci left: 2.503751e-03	ci right 2.626859e-03	k: 6694	n:2610000
Cons ci ratio: 1.105826e-01	ci left: 4.546106e-04	ci right 5.081936e-04	k: 1255	n:2610000
KS ci ratio: 2.398725e-03	ci left: 5.051323e-01	ci right 5.063458e-01	k: 1319979	n:2610000
SPTBN4   2610000 perm   3386 sec   (771 perm/sec)   p_kst 5.057391e-01   p_cons 4.808429e-04   p_joint 2.564751e-03

Joint ci ratio: 4.802718e-02	ci left: 2.475338e-03	ci right 2.597521e-03	k: 6644	n:2620000
Cons ci ratio: 1.104947e-01	ci left: 4.536177e-04	ci right 5.070384e-04	k: 1257	n:2620000
KS ci ratio: 2.394116e-03	ci left: 5.051391e-01	ci right 5.063502e-01	k: 1325051	n:2620000
SPTBN4   2620000 perm   3409 sec   (769 perm/sec)   p_kst 5.057447e-01   p_cons 4.797710e-04   p_joint 2.535878e-03

Joint ci ratio: 4.792628e-02	ci left: 2.476445e-03	ci right 2.598419e-03	k: 6672	n:2630000
Cons ci ratio: 1.103632e-01	ci left: 4.530021e-04	ci right 5.062827e-04	k: 1260	n:2630000
KS ci ratio: 2.389570e-03	ci left: 5.051381e-01	ci right 5.063470e-01	k: 1330103	n:2630000
SPTBN4   2630000 perm   3432 sec   (766 perm/sec)   p_kst 5.057426e-01   p_cons 4.790875e-04   p_joint 2.536882e-03

Joint ci ratio: 4.780815e-02	ci left: 2.479415e-03	ci right 2.601226e-03	k: 6705	n:2640000
Cons ci ratio: 1.099281e-01	ci left: 4.549697e-04	ci right 5.082571e-04	k: 1270	n:2640000
KS ci ratio: 2.385167e-03	ci left: 5.051126e-01	ci right 5.063192e-01	k: 1335090	n:2640000
SPTBN4   2640000 perm   3456 sec   (764 perm/sec)   p_kst 5.057159e-01   p_cons 4.810606e-04   p_joint 2.539773e-03

Joint ci ratio: 4.773351e-02	ci left: 2.477889e-03	ci right 2.599429e-03	k: 6726	n:2650000
Cons ci ratio: 1.098418e-01	ci left: 4.539868e-04	ci right 5.071147e-04	k: 1272	n:2650000
KS ci ratio: 2.380647e-03	ci left: 5.051171e-01	ci right 5.063214e-01	k: 1340156	n:2650000
SPTBN4   2650000 perm   3479 sec   (762 perm/sec)   p_kst 5.057192e-01   p_cons 4.800000e-04   p_joint 2.538113e-03

Joint ci ratio: 4.796301e-02	ci left: 2.444800e-03	ci right 2.565310e-03	k: 6662	n:2660000
Cons ci ratio: 1.095409e-01	ci left: 4.548395e-04	ci right 5.079120e-04	k: 1279	n:2660000
KS ci ratio: 2.376011e-03	ci left: 5.051512e-01	ci right 5.063533e-01	k: 1345301	n:2660000
SPTBN4   2660000 perm   3502 sec   (760 perm/sec)   p_kst 5.057523e-01   p_cons 4.808271e-04   p_joint 2.504511e-03

Joint ci ratio: 4.789124e-02	ci left: 2.443044e-03	ci right 2.563282e-03	k: 6682	n:2670000
Cons ci ratio: 1.093702e-01	ci left: 4.545931e-04	ci right 5.075488e-04	k: 1283	n:2670000
KS ci ratio: 2.371548e-03	ci left: 5.051544e-01	ci right 5.063542e-01	k: 1350364	n:2670000
SPTBN4   2670000 perm   3525 sec   (757 perm/sec)   p_kst 5.057543e-01   p_cons 4.805243e-04   p_joint 2.502622e-03

Joint ci ratio: 4.776980e-02	ci left: 2.446463e-03	ci right 2.566556e-03	k: 6716	n:2680000
Cons ci ratio: 1.091155e-01	ci left: 4.550745e-04	ci right 5.079549e-04	k: 1289	n:2680000
KS ci ratio: 2.367003e-03	ci left: 5.051800e-01	ci right 5.063775e-01	k: 1355487	n:2680000
SPTBN4   2680000 perm   3548 sec   (755 perm/sec)   p_kst 5.057787e-01   p_cons 4.809701e-04   p_joint 2.505970e-03

Joint ci ratio: 4.768824e-02	ci left: 2.445817e-03	ci right 2.565667e-03	k: 6739	n:2690000
Cons ci ratio: 1.089468e-01	ci left: 4.548292e-04	ci right 5.075941e-04	k: 1293	n:2690000
KS ci ratio: 2.362552e-03	ci left: 5.051912e-01	ci right 5.063865e-01	k: 1360572	n:2690000
SPTBN4   2690000 perm   3572 sec   (753 perm/sec)   p_kst 5.057888e-01   p_cons 4.806691e-04   p_joint 2.505204e-03

Joint ci ratio: 4.758242e-02	ci left: 2.447737e-03	ci right 2.567408e-03	k: 6769	n:2700000
Cons ci ratio: 1.088207e-01	ci left: 4.542255e-04	ci right 5.068555e-04	k: 1296	n:2700000
KS ci ratio: 2.358328e-03	ci left: 5.051594e-01	ci right 5.063525e-01	k: 1365541	n:2700000
SPTBN4   2700000 perm   3594 sec   (751 perm/sec)   p_kst 5.057559e-01   p_cons 4.800000e-04   p_joint 2.507037e-03

Joint ci ratio: 4.748780e-02	ci left: 2.448550e-03	ci right 2.568016e-03	k: 6796	n:2710000
Cons ci ratio: 1.086116e-01	ci left: 4.543442e-04	ci right 5.068804e-04	k: 1301	n:2710000
KS ci ratio: 2.354054e-03	ci left: 5.051433e-01	ci right 5.063342e-01	k: 1370552	n:2710000
SPTBN4   2710000 perm   3617 sec   (749 perm/sec)   p_kst 5.057387e-01   p_cons 4.800738e-04   p_joint 2.507749e-03

Joint ci ratio: 4.740419e-02	ci left: 2.448266e-03	ci right 2.567502e-03	k: 6820	n:2720000
Cons ci ratio: 1.084867e-01	ci left: 4.537468e-04	ci right 5.061497e-04	k: 1304	n:2720000
KS ci ratio: 2.349612e-03	ci left: 5.051678e-01	ci right 5.063565e-01	k: 1375673	n:2720000
SPTBN4   2720000 perm   3640 sec   (747 perm/sec)   p_kst 5.057621e-01   p_cons 4.794118e-04   p_joint 2.507353e-03

Joint ci ratio: 4.732449e-02	ci left: 2.447624e-03	ci right 2.566622e-03	k: 6843	n:2730000
Cons ci ratio: 1.083623e-01	ci left: 4.531538e-04	ci right 5.054244e-04	k: 1307	n:2730000
KS ci ratio: 2.345299e-03	ci left: 5.051701e-01	ci right 5.063566e-01	k: 1380734	n:2730000
SPTBN4   2730000 perm   3664 sec   (745 perm/sec)   p_kst 5.057634e-01   p_cons 4.787546e-04   p_joint 2.506593e-03

Joint ci ratio: 4.720042e-02	ci left: 2.451674e-03	ci right 2.570549e-03	k: 6879	n:2740000
Cons ci ratio: 1.079503e-01	ci left: 4.550509e-04	ci right 5.073281e-04	k: 1317	n:2740000
KS ci ratio: 2.341044e-03	ci left: 5.051651e-01	ci right 5.063495e-01	k: 1385775	n:2740000
SPTBN4   2740000 perm   3688 sec   (743 perm/sec)   p_kst 5.057573e-01   p_cons 4.806569e-04   p_joint 2.510584e-03

Joint ci ratio: 4.769664e-02	ci left: 2.391733e-03	ci right 2.508955e-03	k: 6737	n:2750000
Cons ci ratio: 1.077461e-01	ci left: 4.551653e-04	ci right 5.073504e-04	k: 1322	n:2750000
KS ci ratio: 2.336846e-03	ci left: 5.051529e-01	ci right 5.063351e-01	k: 1390796	n:2750000
SPTBN4   2750000 perm   3712 sec   (741 perm/sec)   p_kst 5.057440e-01   p_cons 4.807273e-04   p_joint 2.449818e-03

Joint ci ratio: 4.761545e-02	ci left: 2.391302e-03	ci right 2.508297e-03	k: 6760	n:2760000
Cons ci ratio: 1.075836e-01	ci left: 4.549264e-04	ci right 5.070005e-04	k: 1326	n:2760000
KS ci ratio: 2.332478e-03	ci left: 5.051821e-01	ci right 5.063621e-01	k: 1395931	n:2760000
SPTBN4   2760000 perm   3736 sec   (739 perm/sec)   p_kst 5.057721e-01   p_cons 4.804348e-04   p_joint 2.449275e-03

Joint ci ratio: 4.754522e-02	ci left: 2.389803e-03	ci right 2.506548e-03	k: 6780	n:2770000
Cons ci ratio: 1.073412e-01	ci left: 4.553919e-04	ci right 5.073944e-04	k: 1332	n:2770000
KS ci ratio: 2.328502e-03	ci left: 5.051320e-01	ci right 5.063099e-01	k: 1400847	n:2770000
SPTBN4   2770000 perm   3760 sec   (737 perm/sec)   p_kst 5.057209e-01   p_cons 4.808664e-04   p_joint 2.447653e-03

Joint ci ratio: 4.831577e-02	ci left: 2.305148e-03	ci right 2.419633e-03	k: 6566	n:2780000
Cons ci ratio: 1.072608e-01	ci left: 4.544539e-04	ci right 5.063080e-04	k: 1334	n:2780000
KS ci ratio: 2.324290e-03	ci left: 5.051373e-01	ci right 5.063131e-01	k: 1405916	n:2780000
SPTBN4   2780000 perm   3784 sec   (735 perm/sec)   p_kst 5.057252e-01   p_cons 4.798561e-04   p_joint 2.361871e-03

Joint ci ratio: 4.824974e-02	ci left: 2.303260e-03	ci right 2.417490e-03	k: 6584	n:2790000
Cons ci ratio: 1.070206e-01	ci left: 4.549180e-04	ci right 5.067014e-04	k: 1340	n:2790000
KS ci ratio: 2.320173e-03	ci left: 5.051271e-01	ci right 5.063008e-01	k: 1410942	n:2790000
SPTBN4   2790000 perm   3808 sec   (733 perm/sec)   p_kst 5.057140e-01   p_cons 4.802867e-04   p_joint 2.359857e-03

Joint ci ratio: 4.816205e-02	ci left: 2.303502e-03	ci right 2.417531e-03	k: 6608	n:2800000
Cons ci ratio: 1.069011e-01	ci left: 4.543360e-04	ci right 5.059919e-04	k: 1343	n:2800000
KS ci ratio: 2.315969e-03	ci left: 5.051406e-01	ci right 5.063122e-01	k: 1416034	n:2800000
SPTBN4   2800000 perm   3832 sec   (731 perm/sec)   p_kst 5.057264e-01   p_cons 4.796429e-04   p_joint 2.360000e-03

Joint ci ratio: 4.852794e-02	ci left: 2.260498e-03	ci right 2.373272e-03	k: 6509	n:2810000
Cons ci ratio: 1.067820e-01	ci left: 4.537583e-04	ci right 5.052873e-04	k: 1346	n:2810000
KS ci ratio: 2.311876e-03	ci left: 5.051348e-01	ci right 5.063043e-01	k: 1421072	n:2810000
SPTBN4   2810000 perm   3856 sec   (729 perm/sec)   p_kst 5.057196e-01   p_cons 4.790036e-04   p_joint 2.316370e-03

Joint ci ratio: 4.847592e-02	ci left: 2.257386e-03	ci right 2.369881e-03	k: 6523	n:2820000
Cons ci ratio: 1.066633e-01	ci left: 4.531846e-04	ci right 5.045877e-04	k: 1349	n:2820000
KS ci ratio: 2.307800e-03	ci left: 5.051301e-01	ci right 5.062975e-01	k: 1426113	n:2820000
SPTBN4   2820000 perm   3880 sec   (727 perm/sec)   p_kst 5.057138e-01   p_cons 4.783688e-04   p_joint 2.313121e-03

Joint ci ratio: 4.840181e-02	ci left: 2.256391e-03	ci right 2.368659e-03	k: 6543	n:2830000
Cons ci ratio: 1.063878e-01	ci left: 4.539909e-04	ci right 5.053441e-04	k: 1356	n:2830000
KS ci ratio: 2.303696e-03	ci left: 5.051360e-01	ci right 5.063014e-01	k: 1431184	n:2830000
SPTBN4   2830000 perm   3904 sec   (725 perm/sec)   p_kst 5.057187e-01   p_cons 4.791519e-04   p_joint 2.312014e-03

Joint ci ratio: 4.845771e-02	ci left: 2.243228e-03	ci right 2.354974e-03	k: 6528	n:2840000
Cons ci ratio: 1.060755e-01	ci left: 4.551344e-04	ci right 5.064564e-04	k: 1364	n:2840000
KS ci ratio: 2.299587e-03	ci left: 5.051479e-01	ci right 5.063112e-01	k: 1436272	n:2840000
SPTBN4   2840000 perm   3929 sec   (723 perm/sec)   p_kst 5.057296e-01   p_cons 4.802817e-04   p_joint 2.298592e-03

Joint ci ratio: 4.837628e-02	ci left: 2.242983e-03	ci right 2.354523e-03	k: 6550	n:2850000
Cons ci ratio: 1.059205e-01	ci left: 4.549037e-04	ci right 5.061201e-04	k: 1368	n:2850000
KS ci ratio: 2.295464e-03	ci left: 5.051674e-01	ci right 5.063287e-01	k: 1441382	n:2850000
SPTBN4   2850000 perm   3954 sec   (721 perm/sec)   p_kst 5.057481e-01   p_cons 4.800000e-04   p_joint 2.298246e-03

Joint ci ratio: 4.854387e-02	ci left: 2.219596e-03	ci right 2.330367e-03	k: 6505	n:2860000
Cons ci ratio: 1.055356e-01	ci left: 4.567172e-04	ci right 5.079393e-04	k: 1378	n:2860000
KS ci ratio: 2.291541e-03	ci left: 5.051480e-01	ci right 5.063072e-01	k: 1446381	n:2860000
SPTBN4   2860000 perm   3978 sec   (719 perm/sec)   p_kst 5.057276e-01   p_cons 4.818182e-04   p_joint 2.274476e-03

Joint ci ratio: 4.875103e-02	ci left: 2.192931e-03	ci right 2.302851e-03	k: 6450	n:2870000
Cons ci ratio: 1.053448e-01	ci left: 4.568221e-04	ci right 5.079576e-04	k: 1383	n:2870000
KS ci ratio: 2.287592e-03	ci left: 5.051388e-01	ci right 5.062960e-01	k: 1451409	n:2870000
SPTBN4   2870000 perm   4003 sec   (717 perm/sec)   p_kst 5.057174e-01   p_cons 4.818815e-04   p_joint 2.247387e-03

Joint ci ratio: 4.893402e-02	ci left: 2.168853e-03	ci right 2.277985e-03	k: 6402	n:2880000
Cons ci ratio: 1.051929e-01	ci left: 4.565882e-04	ci right 5.076193e-04	k: 1387	n:2880000
KS ci ratio: 2.283687e-03	ci left: 5.051245e-01	ci right 5.062797e-01	k: 1456422	n:2880000
SPTBN4   2880000 perm   4028 sec   (715 perm/sec)   p_kst 5.057021e-01   p_cons 4.815972e-04   p_joint 2.222917e-03

Joint ci ratio: 4.886924e-02	ci left: 2.167158e-03	ci right 2.276057e-03	k: 6419	n:2890000
Cons ci ratio: 1.050795e-01	ci left: 4.560191e-04	ci right 5.069282e-04	k: 1390	n:2890000
KS ci ratio: 2.279711e-03	ci left: 5.051303e-01	ci right 5.062835e-01	k: 1461493	n:2890000
SPTBN4   2890000 perm   4053 sec   (713 perm/sec)   p_kst 5.057069e-01   p_cons 4.809689e-04   p_joint 2.221107e-03

Joint ci ratio: 4.879711e-02	ci left: 2.166157e-03	ci right 2.274841e-03	k: 6438	n:2900000
Cons ci ratio: 1.049664e-01	ci left: 4.554539e-04	ci right 5.062418e-04	k: 1393	n:2900000
KS ci ratio: 2.275811e-03	ci left: 5.051237e-01	ci right 5.062749e-01	k: 1466528	n:2900000
SPTBN4   2900000 perm   4079 sec   (711 perm/sec)   p_kst 5.056993e-01   p_cons 4.803448e-04   p_joint 2.220000e-03

Joint ci ratio: 4.870263e-02	ci left: 2.167200e-03	ci right 2.275719e-03	k: 6463	n:2910000
Cons ci ratio: 1.047412e-01	ci left: 4.558966e-04	ci right 5.066181e-04	k: 1399	n:2910000
KS ci ratio: 2.271985e-03	ci left: 5.051055e-01	ci right 5.062547e-01	k: 1471529	n:2910000
SPTBN4   2910000 perm   4104 sec   (709 perm/sec)   p_kst 5.056801e-01   p_cons 4.807560e-04   p_joint 2.220962e-03

Joint ci ratio: 4.947987e-02	ci left: 2.091785e-03	ci right 2.198247e-03	k: 6262	n:2920000
Cons ci ratio: 1.045546e-01	ci left: 4.560028e-04	ci right 5.066402e-04	k: 1404	n:2920000
KS ci ratio: 2.268085e-03	ci left: 5.051079e-01	ci right 5.062551e-01	k: 1476590	n:2920000
SPTBN4   2920000 perm   4129 sec   (707 perm/sec)   p_kst 5.056815e-01   p_cons 4.808219e-04   p_joint 2.144521e-03

Joint ci ratio: 4.939319e-02	ci left: 2.092062e-03	ci right 2.198346e-03	k: 6284	n:2930000
Cons ci ratio: 1.042582e-01	ci left: 4.571056e-04	ci right 5.077127e-04	k: 1412	n:2930000
KS ci ratio: 2.264284e-03	ci left: 5.050929e-01	ci right 5.062382e-01	k: 1481600	n:2930000
SPTBN4   2930000 perm   4154 sec   (705 perm/sec)   p_kst 5.056655e-01   p_cons 4.819113e-04   p_joint 2.144710e-03

Joint ci ratio: 4.928739e-02	ci left: 2.094016e-03	ci right 2.200166e-03	k: 6311	n:2940000
Cons ci ratio: 1.041477e-01	ci left: 4.565446e-04	ci right 5.070328e-04	k: 1415	n:2940000
KS ci ratio: 2.260409e-03	ci left: 5.050984e-01	ci right 5.062417e-01	k: 1486670	n:2940000
SPTBN4   2940000 perm   4182 sec   (703 perm/sec)   p_kst 5.056701e-01   p_cons 4.812925e-04   p_joint 2.146599e-03

Joint ci ratio: 4.917838e-02	ci left: 2.096292e-03	ci right 2.202316e-03	k: 6339	n:2950000
Cons ci ratio: 1.038912e-01	ci left: 4.573081e-04	ci right 5.077486e-04	k: 1422	n:2950000
KS ci ratio: 2.256629e-03	ci left: 5.050873e-01	ci right 5.062287e-01	k: 1491691	n:2950000
SPTBN4   2950000 perm   4214 sec   (700 perm/sec)   p_kst 5.056580e-01   p_cons 4.820339e-04   p_joint 2.148814e-03

Joint ci ratio: 4.908940e-02	ci left: 2.096885e-03	ci right 2.202741e-03	k: 6362	n:2960000
Cons ci ratio: 1.034919e-01	ci left: 4.593831e-04	ci right 5.098458e-04	k: 1433	n:2960000
KS ci ratio: 2.252806e-03	ci left: 5.050901e-01	ci right 5.062295e-01	k: 1496753	n:2960000
SPTBN4   2960000 perm   4240 sec   (698 perm/sec)   p_kst 5.056598e-01   p_cons 4.841216e-04   p_joint 2.149324e-03

Joint ci ratio: 4.901630e-02	ci left: 2.096144e-03	ci right 2.201800e-03	k: 6381	n:2970000
Cons ci ratio: 1.033119e-01	ci left: 4.594763e-04	ci right 5.098561e-04	k: 1438	n:2970000
KS ci ratio: 2.248953e-03	ci left: 5.051036e-01	ci right 5.062412e-01	k: 1501847	n:2970000
SPTBN4   2970000 perm   4265 sec   (696 perm/sec)   p_kst 5.056724e-01   p_cons 4.841751e-04   p_joint 2.148485e-03

Joint ci ratio: 4.892054e-02	ci left: 2.097396e-03	ci right 2.202904e-03	k: 6406	n:2980000
Cons ci ratio: 1.031686e-01	ci left: 4.592420e-04	ci right 5.095221e-04	k: 1442	n:2980000
KS ci ratio: 2.245149e-03	ci left: 5.051107e-01	ci right 5.062463e-01	k: 1506922	n:2980000
SPTBN4   2980000 perm   4292 sec   (694 perm/sec)   p_kst 5.056785e-01   p_cons 4.838926e-04   p_joint 2.149664e-03

Joint ci ratio: 4.911701e-02	ci left: 2.073533e-03	ci right 2.178271e-03	k: 6355	n:2990000
Cons ci ratio: 1.029193e-01	ci left: 4.599869e-04	ci right 5.102195e-04	k: 1449	n:2990000
KS ci ratio: 2.241328e-03	ci left: 5.051258e-01	ci right 5.062595e-01	k: 1512021	n:2990000
SPTBN4   2990000 perm   4318 sec   (692 perm/sec)   p_kst 5.056926e-01   p_cons 4.846154e-04   p_joint 2.125418e-03

Joint ci ratio: 4.912493e-02	ci left: 2.065963e-03	ci right 2.170335e-03	k: 6353	n:3000000
Cons ci ratio: 1.027423e-01	ci left: 4.600774e-04	ci right 5.102283e-04	k: 1454	n:3000000
KS ci ratio: 2.237718e-03	ci left: 5.050981e-01	ci right 5.062299e-01	k: 1516992	n:3000000
SPTBN4   3000000 perm   4343 sec   (691 perm/sec)   p_kst 5.056640e-01   p_cons 4.846667e-04   p_joint 2.117667e-03

Joint ci ratio: 4.910962e-02	ci left: 2.060412e-03	ci right 2.164470e-03	k: 6357	n:3010000
Cons ci ratio: 1.025311e-01	ci left: 4.604911e-04	ci right 5.105777e-04	k: 1460	n:3010000
KS ci ratio: 2.234019e-03	ci left: 5.050941e-01	ci right 5.062241e-01	k: 1522034	n:3010000
SPTBN4   3010000 perm   4369 sec   (689 perm/sec)   p_kst 5.056591e-01   p_cons 4.850498e-04   p_joint 2.111960e-03

Joint ci ratio: 4.899025e-02	ci left: 2.063728e-03	ci right 2.167694e-03	k: 6388	n:3020000
Cons ci ratio: 1.022514e-01	ci left: 4.615475e-04	ci right 5.116038e-04	k: 1468	n:3020000
KS ci ratio: 2.230191e-03	ci left: 5.051234e-01	ci right 5.062515e-01	k: 1527176	n:3020000
SPTBN4   3020000 perm   4395 sec   (687 perm/sec)   p_kst 5.056874e-01   p_cons 4.860927e-04   p_joint 2.115232e-03

Joint ci ratio: 4.897890e-02	ci left: 2.057895e-03	ci right 2.161542e-03	k: 6391	n:3030000
Cons ci ratio: 1.020432e-01	ci left: 4.619539e-04	ci right 5.119461e-04	k: 1474	n:3030000
KS ci ratio: 2.226492e-03	ci left: 5.051280e-01	ci right 5.062542e-01	k: 1532244	n:3030000
SPTBN4   3030000 perm   4421 sec   (685 perm/sec)   p_kst 5.056911e-01   p_cons 4.864686e-04   p_joint 2.109241e-03

Joint ci ratio: 4.891393e-02	ci left: 2.056649e-03	ci right 2.160092e-03	k: 6408	n:3040000
Cons ci ratio: 1.019742e-01	ci left: 4.610754e-04	ci right 5.109368e-04	k: 1476	n:3040000
KS ci ratio: 2.222773e-03	ci left: 5.051411e-01	ci right 5.062655e-01	k: 1537338	n:3040000
SPTBN4   3040000 perm   4447 sec   (684 perm/sec)   p_kst 5.057033e-01   p_cons 4.855263e-04   p_joint 2.107895e-03

Joint ci ratio: 4.969327e-02	ci left: 1.985463e-03	ci right 2.086962e-03	k: 6209	n:3050000
Cons ci ratio: 1.018708e-01	ci left: 4.605222e-04	ci right 5.102702e-04	k: 1479	n:3050000
KS ci ratio: 2.219199e-03	ci left: 5.051256e-01	ci right 5.062481e-01	k: 1542345	n:3050000
SPTBN4   3050000 perm   4473 sec   (682 perm/sec)   p_kst 5.056869e-01   p_cons 4.849180e-04   p_joint 2.035738e-03

Joint ci ratio: 4.972153e-02	ci left: 1.976715e-03	ci right 2.077826e-03	k: 6202	n:3060000
Cons ci ratio: 1.017677e-01	ci left: 4.599726e-04	ci right 5.096080e-04	k: 1482	n:3060000
KS ci ratio: 2.215614e-03	ci left: 5.051164e-01	ci right 5.062371e-01	k: 1547371	n:3060000
SPTBN4   3060000 perm   4500 sec   (680 perm/sec)   p_kst 5.056768e-01   p_cons 4.843137e-04   p_joint 2.026797e-03

Joint ci ratio: 4.964556e-02	ci left: 1.976388e-03	ci right 2.077324e-03	k: 6221	n:3070000
Cons ci ratio: 1.016650e-01	ci left: 4.594267e-04	ci right 5.089501e-04	k: 1485	n:3070000
KS ci ratio: 2.212106e-03	ci left: 5.050940e-01	ci right 5.062128e-01	k: 1552356	n:3070000
SPTBN4   3070000 perm   4526 sec   (678 perm/sec)   p_kst 5.056534e-01   p_cons 4.837134e-04   p_joint 2.026384e-03

Joint ci ratio: 4.958986e-02	ci left: 1.974460e-03	ci right 2.075181e-03	k: 6235	n:3080000
Cons ci ratio: 1.016651e-01	ci left: 4.579350e-04	ci right 5.072977e-04	k: 1485	n:3080000
KS ci ratio: 2.208522e-03	ci left: 5.050928e-01	ci right 5.062098e-01	k: 1557406	n:3080000
SPTBN4   3080000 perm   4553 sec   (676 perm/sec)   p_kst 5.056513e-01   p_cons 4.821429e-04   p_joint 2.024351e-03

Joint ci ratio: 4.959002e-02	ci left: 1.968070e-03	ci right 2.068465e-03	k: 6235	n:3090000
Cons ci ratio: 1.014264e-01	ci left: 4.586609e-04	ci right 5.079789e-04	k: 1492	n:3090000
KS ci ratio: 2.204863e-03	ci left: 5.051123e-01	ci right 5.062275e-01	k: 1562520	n:3090000
SPTBN4   3090000 perm   4579 sec   (675 perm/sec)   p_kst 5.056699e-01   p_cons 4.828479e-04   p_joint 2.017799e-03

Joint ci ratio: 4.958620e-02	ci left: 1.962040e-03	ci right 2.062120e-03	k: 6236	n:3100000
Cons ci ratio: 1.012570e-01	ci left: 4.587533e-04	ci right 5.079940e-04	k: 1497	n:3100000
KS ci ratio: 2.201362e-03	ci left: 5.051001e-01	ci right 5.062135e-01	k: 1567536	n:3100000
SPTBN4   3100000 perm   4606 sec   (673 perm/sec)   p_kst 5.056568e-01   p_cons 4.829032e-04   p_joint 2.011613e-03

Joint ci ratio: 4.949500e-02	ci left: 1.963035e-03	ci right 2.062976e-03	k: 6259	n:3110000
Cons ci ratio: 1.010885e-01	ci left: 4.588453e-04	ci right 5.080089e-04	k: 1502	n:3110000
KS ci ratio: 2.197835e-03	ci left: 5.050975e-01	ci right 5.062092e-01	k: 1572582	n:3110000
SPTBN4   3110000 perm   4632 sec   (671 perm/sec)   p_kst 5.056534e-01   p_cons 4.829582e-04   p_joint 2.012540e-03

Joint ci ratio: 4.939642e-02	ci left: 1.964657e-03	ci right 2.064476e-03	k: 6284	n:3120000
Cons ci ratio: 1.009877e-01	ci left: 4.583119e-04	ci right 5.073665e-04	k: 1505	n:3120000
KS ci ratio: 2.194139e-03	ci left: 5.051374e-01	ci right 5.062472e-01	k: 1577760	n:3120000
SPTBN4   3120000 perm   4658 sec   (670 perm/sec)   p_kst 5.056923e-01   p_cons 4.823718e-04   p_joint 2.014103e-03

Joint ci ratio: 4.931410e-02	ci left: 1.965007e-03	ci right 2.064672e-03	k: 6305	n:3130000
Cons ci ratio: 1.008539e-01	ci left: 4.580933e-04	ci right 5.070558e-04	k: 1509	n:3130000
KS ci ratio: 2.190558e-03	ci left: 5.051549e-01	ci right 5.062630e-01	k: 1582869	n:3130000
SPTBN4   3130000 perm   4685 sec   (668 perm/sec)   p_kst 5.057089e-01   p_cons 4.821086e-04   p_joint 2.014377e-03

Joint ci ratio: 4.922049e-02	ci left: 1.966298e-03	ci right 2.065834e-03	k: 6329	n:3140000
Cons ci ratio: 1.005878e-01	ci left: 4.591180e-04	ci right 5.080529e-04	k: 1517	n:3140000
KS ci ratio: 2.187166e-03	ci left: 5.051331e-01	ci right 5.062395e-01	k: 1587855	n:3140000
SPTBN4   3140000 perm   4712 sec   (666 perm/sec)   p_kst 5.056863e-01   p_cons 4.831210e-04   p_joint 2.015605e-03

Joint ci ratio: 4.915068e-02	ci left: 1.965700e-03	ci right 2.065060e-03	k: 6347	n:3150000
Cons ci ratio: 1.004225e-01	ci left: 4.592079e-04	ci right 5.080672e-04	k: 1522	n:3150000
KS ci ratio: 2.183662e-03	ci left: 5.051407e-01	ci right 5.062453e-01	k: 1592933	n:3150000
SPTBN4   3150000 perm   4739 sec   (665 perm/sec)   p_kst 5.056930e-01   p_cons 4.831746e-04   p_joint 2.014921e-03

Joint ci ratio: 4.921691e-02	ci left: 1.954165e-03	ci right 2.053080e-03	k: 6330	n:3160000
Cons ci ratio: 1.002909e-01	ci left: 4.589888e-04	ci right 5.077570e-04	k: 1526	n:3160000
KS ci ratio: 2.180294e-03	ci left: 5.051211e-01	ci right 5.062239e-01	k: 1597925	n:3160000
SPTBN4   3160000 perm   4766 sec   (663 perm/sec)   p_kst 5.056725e-01   p_cons 4.829114e-04   p_joint 2.003165e-03

Joint ci ratio: 4.913548e-02	ci left: 1.954544e-03	ci right 2.053309e-03	k: 6351	n:3170000
Cons ci ratio: 1.000944e-01	ci left: 4.593862e-04	ci right 5.080954e-04	k: 1532	n:3170000
KS ci ratio: 2.176859e-03	ci left: 5.051204e-01	ci right 5.062215e-01	k: 1602977	n:3170000
SPTBN4   3170000 perm   4797 sec   (661 perm/sec)   p_kst 5.056710e-01   p_cons 4.832808e-04   p_joint 2.003470e-03

Joint ci ratio: 4.905060e-02	ci left: 1.955231e-03	ci right 2.053856e-03	k: 6373	n:3180000
Cons ci ratio: 9.980183e-02	ci left: 4.607010e-04	ci right 5.093985e-04	k: 1541	n:3180000
KS ci ratio: 2.173485e-03	ci left: 5.051094e-01	ci right 5.062088e-01	k: 1607996	n:3180000
SPTBN4   3180000 perm   4828 sec   (659 perm/sec)   p_kst 5.056591e-01   p_cons 4.845912e-04   p_joint 2.004088e-03

Outputting figure to mutsig2_images.part000000000166/SPTBN4.11_7929_3180000_0.50566_0.00048459_0.0020041.png
                gene_name: SPTBN4
               theta_stop: 0.100 
                    nperm: 3180000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.00048 
      ci_cons_bounds_left: 0.00046 
     ci_cons_bounds_right: 0.00051 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0021 

Current progress: 10 percent done.
SPTBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
KS ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
SPTBN1   10000 perm   3 sec   (3663 perm/sec)   p_kst 5.190000e-02   p_cons 3.805000e-01   p_joint 1.277000e-01

Joint ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
Cons ci ratio: 3.530110e-02	ci left: 3.746111e-01	ci right 3.881234e-01	k: 7627	n:20000
KS ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
SPTBN1   20000 perm   6 sec   (3353 perm/sec)   p_kst 4.985000e-02   p_cons 3.813500e-01   p_joint 9.165000e-02

Joint ci ratio: 7.501217e-02	ci left: 8.029511e-02	ci right 8.658584e-02	k: 2502	n:30000
Cons ci ratio: 2.879062e-02	ci left: 3.763972e-01	ci right 3.874257e-01	k: 11457	n:30000
KS ci ratio: 9.823677e-02	ci left: 4.791886e-02	ci right 5.290200e-02	k: 1511	n:30000
SPTBN1   30000 perm   9 sec   (3250 perm/sec)   p_kst 5.036667e-02   p_cons 3.819000e-01   p_joint 8.340000e-02

Outputting figure to mutsig2_images.part000000000166/SPTBN1.10_7435_30000_0.050367_0.3819_0.0834.png
                gene_name: SPTBN1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 12 percent done.
SRGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
Cons ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
KS ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
SRGAP1   10000 perm   2 sec   (4723 perm/sec)   p_kst 1.895000e-01   p_cons 5.467000e-01   p_joint 2.640000e-01

Outputting figure to mutsig2_images.part000000000166/SRGAP1.10_3346_10000_0.1895_0.5467_0.264.png
                gene_name: SRGAP1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
SRGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
SRGAP3   10000 perm   2 sec   (4712 perm/sec)   p_kst 5.743000e-01   p_cons 2.850000e-02   p_joint 7.120000e-02

Joint ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
Cons ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
KS ci ratio: 2.216934e-02	ci left: 6.030492e-01	ci right 6.166188e-01	k: 12197	n:20000
SRGAP3   20000 perm   5 sec   (4285 perm/sec)   p_kst 6.098500e-01   p_cons 2.810000e-02   p_joint 1.039000e-01

Joint ci ratio: 7.161540e-02	ci left: 8.753895e-02	ci right 9.407388e-02	k: 2723	n:30000
Cons ci ratio: 1.322943e-01	ci left: 2.654940e-02	ci right 3.034265e-02	k: 852	n:30000
KS ci ratio: 1.811102e-02	ci left: 6.040526e-01	ci right 6.151262e-01	k: 18288	n:30000
SRGAP3   30000 perm   7 sec   (4109 perm/sec)   p_kst 6.096000e-01   p_cons 2.840000e-02   p_joint 9.076667e-02

Joint ci ratio: 6.711806e-02	ci left: 7.593167e-02	ci right 8.122971e-02	k: 3142	n:40000
Cons ci ratio: 1.175473e-01	ci left: 2.545781e-02	ci right 2.866135e-02	k: 1081	n:40000
KS ci ratio: 1.654269e-02	ci left: 5.791262e-01	ci right 5.888116e-01	k: 23359	n:40000
SRGAP3   40000 perm   10 sec   (3972 perm/sec)   p_kst 5.839750e-01   p_cons 2.702500e-02   p_joint 7.855000e-02

Joint ci ratio: 6.414505e-02	ci left: 6.726632e-02	ci right 7.174382e-02	k: 3474	n:50000
Cons ci ratio: 1.139020e-01	ci left: 2.182046e-02	ci right 2.447530e-02	k: 1156	n:50000
KS ci ratio: 1.475175e-02	ci left: 5.811070e-01	ci right 5.897631e-01	k: 29272	n:50000
SRGAP3   50000 perm   13 sec   (3877 perm/sec)   p_kst 5.854400e-01   p_cons 2.312000e-02   p_joint 6.948000e-02

Joint ci ratio: 5.606018e-02	ci left: 7.323375e-02	ci right 7.747410e-02	k: 4520	n:60000
Cons ci ratio: 1.038403e-01	ci left: 2.199399e-02	ci right 2.441910e-02	k: 1391	n:60000
KS ci ratio: 1.349167e-02	ci left: 5.805778e-01	ci right 5.884807e-01	k: 35072	n:60000
SRGAP3   60000 perm   16 sec   (3798 perm/sec)   p_kst 5.845333e-01   p_cons 2.318333e-02   p_joint 7.533333e-02

Joint ci ratio: 5.343178e-02	ci left: 6.948905e-02	ci right 7.331800e-02	k: 4997	n:70000
Cons ci ratio: 9.565622e-02	ci left: 2.230673e-02	ci right 2.456158e-02	k: 1639	n:70000
KS ci ratio: 1.248991e-02	ci left: 5.809102e-01	ci right 5.882256e-01	k: 40920	n:70000
SRGAP3   70000 perm   19 sec   (3720 perm/sec)   p_kst 5.845714e-01   p_cons 2.341429e-02   p_joint 7.138571e-02

Outputting figure to mutsig2_images.part000000000166/SRGAP3.10_3423_70000_0.58457_0.023414_0.071386.png
                gene_name: SRGAP3
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 15 percent done.
SPTBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
SPTBN2   10000 perm   3 sec   (3833 perm/sec)   p_kst 2.326000e-01   p_cons 7.632000e-01   p_joint 3.699000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN2.9_7317_10000_0.2326_0.7632_0.3699.png
                gene_name: SPTBN2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 17 percent done.
SPTLC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
Cons ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
KS ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
SPTLC3   10000 perm   2 sec   (5243 perm/sec)   p_kst 5.415000e-01   p_cons 4.022000e-01   p_joint 7.132000e-01

Outputting figure to mutsig2_images.part000000000166/SPTLC3.8_1707_10000_0.5415_0.4022_0.7132.png
                gene_name: SPTLC3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 18 percent done.
SPRR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
Cons ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
SPRR3   10000 perm   2 sec   (6202 perm/sec)   p_kst 2.100000e-03   p_cons 5.370000e-02   p_joint 1.410000e-02

Joint ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
Cons ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
KS ci ratio: 6.527288e-01	ci left: 1.219232e-03	ci right 2.432994e-03	k: 35	n:20000
SPRR3   20000 perm   4 sec   (5496 perm/sec)   p_kst 1.750000e-03   p_cons 5.360000e-02   p_joint 6.950000e-03

Joint ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
Cons ci ratio: 9.557049e-02	ci left: 5.055674e-02	ci right 5.566357e-02	k: 1592	n:30000
KS ci ratio: 4.933466e-01	ci left: 1.584857e-03	ci right 2.648601e-03	k: 62	n:30000
SPRR3   30000 perm   6 sec   (5210 perm/sec)   p_kst 2.066667e-03   p_cons 5.306667e-02   p_joint 2.833333e-03

Joint ci ratio: 3.682368e-01	ci left: 2.306053e-03	ci right 3.368168e-03	k: 112	n:40000
Cons ci ratio: 8.358026e-02	ci left: 4.994228e-02	ci right 5.432303e-02	k: 2084	n:40000
KS ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
SPRR3   40000 perm   8 sec   (4997 perm/sec)   p_kst 2.175000e-03   p_cons 5.210000e-02   p_joint 2.800000e-03

Joint ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
Cons ci ratio: 7.733022e-02	ci left: 4.698667e-02	ci right 5.078592e-02	k: 2443	n:50000
KS ci ratio: 3.785512e-01	ci left: 1.735999e-03	ci right 2.563509e-03	k: 106	n:50000
SPRR3   50000 perm   10 sec   (4853 perm/sec)   p_kst 2.120000e-03   p_cons 4.886000e-02   p_joint 2.340000e-03

Joint ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
Cons ci ratio: 7.106261e-02	ci left: 4.654887e-02	ci right 4.999499e-02	k: 2895	n:60000
KS ci ratio: 3.545362e-01	ci left: 1.673650e-03	ci right 2.409186e-03	k: 121	n:60000
SPRR3   60000 perm   13 sec   (4728 perm/sec)   p_kst 2.016667e-03   p_cons 4.825000e-02   p_joint 2.450000e-03

Joint ci ratio: 3.134990e-01	ci left: 1.879718e-03	ci right 2.591124e-03	k: 155	n:70000
Cons ci ratio: 6.591092e-02	ci left: 4.651241e-02	ci right 4.969661e-02	k: 3366	n:70000
KS ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
SPRR3   70000 perm   15 sec   (4603 perm/sec)   p_kst 2.200000e-03   p_cons 4.808571e-02   p_joint 2.214286e-03

Joint ci ratio: 3.575747e-01	ci left: 1.232420e-03	ci right 1.779755e-03	k: 119	n:80000
Cons ci ratio: 6.137809e-02	ci left: 4.702154e-02	ci right 5.001131e-02	k: 3880	n:80000
KS ci ratio: 2.886519e-01	ci left: 1.968372e-03	ci right 2.643533e-03	k: 183	n:80000
SPRR3   80000 perm   18 sec   (4512 perm/sec)   p_kst 2.287500e-03   p_cons 4.850000e-02   p_joint 1.487500e-03

Joint ci ratio: 3.977989e-01	ci left: 8.640862e-04	ci right 1.302429e-03	k: 96	n:90000
Cons ci ratio: 5.953576e-02	ci left: 4.458572e-02	ci right 4.733253e-02	k: 4135	n:90000
KS ci ratio: 2.714873e-01	ci left: 1.997622e-03	ci right 2.635134e-03	k: 207	n:90000
SPRR3   90000 perm   20 sec   (4431 perm/sec)   p_kst 2.300000e-03   p_cons 4.594444e-02   p_joint 1.066667e-03

Joint ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
Cons ci ratio: 5.638138e-02	ci left: 4.480846e-02	ci right 4.741795e-02	k: 4610	n:100000
KS ci ratio: 2.559571e-01	ci left: 2.040691e-03	ci right 2.648750e-03	k: 233	n:100000
SPRR3   100000 perm   23 sec   (4350 perm/sec)   p_kst 2.330000e-03   p_cons 4.610000e-02   p_joint 9.600000e-04

Joint ci ratio: 3.685715e-01	ci left: 8.384393e-04	ci right 1.225011e-03	k: 112	n:110000
Cons ci ratio: 5.359768e-02	ci left: 4.512846e-02	ci right 4.762280e-02	k: 5100	n:110000
KS ci ratio: 2.432889e-01	ci left: 2.068240e-03	ci right 2.649404e-03	k: 258	n:110000
SPRR3   110000 perm   26 sec   (4275 perm/sec)   p_kst 2.345455e-03   p_cons 4.636364e-02   p_joint 1.018182e-03

Joint ci ratio: 3.347156e-01	ci left: 9.509533e-04	ci right 1.340467e-03	k: 136	n:120000
Cons ci ratio: 5.121332e-02	ci left: 4.535660e-02	ci right 4.774871e-02	k: 5585	n:120000
KS ci ratio: 2.299111e-01	ci left: 2.138927e-03	ci right 2.702217e-03	k: 289	n:120000
SPRR3   120000 perm   29 sec   (4205 perm/sec)   p_kst 2.408333e-03   p_cons 4.654167e-02   p_joint 1.133333e-03

Joint ci ratio: 3.359601e-01	ci left: 8.707520e-04	ci right 1.229028e-03	k: 135	n:130000
Cons ci ratio: 4.929610e-02	ci left: 4.524002e-02	ci right 4.753411e-02	k: 6029	n:130000
KS ci ratio: 2.220159e-01	ci left: 2.126789e-03	ci right 2.665022e-03	k: 310	n:130000
SPRR3   130000 perm   31 sec   (4136 perm/sec)   p_kst 2.384615e-03   p_cons 4.637692e-02   p_joint 1.038462e-03

Joint ci ratio: 3.397444e-01	ci left: 7.889387e-04	ci right 1.118010e-03	k: 132	n:140000
Cons ci ratio: 4.764097e-02	ci left: 4.502856e-02	ci right 4.723315e-02	k: 6457	n:140000
KS ci ratio: 2.158617e-01	ci left: 2.096394e-03	ci right 2.610279e-03	k: 328	n:140000
SPRR3   140000 perm   34 sec   (4072 perm/sec)   p_kst 2.342857e-03   p_cons 4.612143e-02   p_joint 9.428571e-04

Joint ci ratio: 3.276495e-01	ci left: 7.974263e-04	ci right 1.115706e-03	k: 142	n:150000
Cons ci ratio: 4.593961e-02	ci left: 4.522885e-02	ci right 4.736206e-02	k: 6943	n:150000
KS ci ratio: 2.054969e-01	ci left: 2.171357e-03	ci right 2.674851e-03	k: 362	n:150000
SPRR3   150000 perm   37 sec   (4011 perm/sec)   p_kst 2.413333e-03   p_cons 4.628667e-02   p_joint 9.466667e-04

Joint ci ratio: 3.397647e-01	ci left: 6.903150e-04	ci right 9.782697e-04	k: 132	n:160000
Cons ci ratio: 4.445233e-02	ci left: 4.531875e-02	ci right 4.738523e-02	k: 7415	n:160000
KS ci ratio: 1.972428e-01	ci left: 2.219637e-03	ci right 2.711169e-03	k: 393	n:160000
SPRR3   160000 perm   41 sec   (3949 perm/sec)   p_kst 2.456250e-03   p_cons 4.634375e-02   p_joint 8.250000e-04

Joint ci ratio: 2.008663e-01	ci left: 2.010799e-03	ci right 2.465267e-03	k: 379	n:170000
Cons ci ratio: 4.305781e-02	ci left: 4.548639e-02	ci right 4.749382e-02	k: 7902	n:170000
KS ci ratio: 1.910394e-01	ci left: 2.234580e-03	ci right 2.712052e-03	k: 419	n:170000
SPRR3   170000 perm   44 sec   (3884 perm/sec)   p_kst 2.464706e-03   p_cons 4.648235e-02   p_joint 2.229412e-03

Joint ci ratio: 1.497094e-01	ci left: 3.510308e-03	ci right 4.083634e-03	k: 682	n:180000
Cons ci ratio: 4.183388e-02	ci left: 4.553729e-02	ci right 4.748846e-02	k: 8371	n:180000
KS ci ratio: 1.866496e-01	ci left: 2.216293e-03	ci right 2.677743e-03	k: 439	n:180000
SPRR3   180000 perm   47 sec   (3826 perm/sec)   p_kst 2.438889e-03   p_cons 4.650556e-02   p_joint 3.788889e-03

Joint ci ratio: 1.496145e-01	ci left: 3.330597e-03	ci right 3.874195e-03	k: 683	n:190000
Cons ci ratio: 4.073773e-02	ci left: 4.552101e-02	ci right 4.741918e-02	k: 8828	n:190000
KS ci ratio: 1.803996e-01	ci left: 2.255314e-03	ci right 2.707448e-03	k: 470	n:190000
SPRR3   190000 perm   50 sec   (3773 perm/sec)   p_kst 2.473684e-03   p_cons 4.646316e-02   p_joint 3.594737e-03

Joint ci ratio: 1.456234e-01	ci left: 3.347052e-03	ci right 3.877495e-03	k: 721	n:200000
Cons ci ratio: 3.974591e-02	ci left: 4.545743e-02	ci right 4.730574e-02	k: 9275	n:200000
KS ci ratio: 1.766894e-01	ci left: 2.238078e-03	ci right 2.676542e-03	k: 490	n:200000
SPRR3   200000 perm   54 sec   (3719 perm/sec)   p_kst 2.450000e-03   p_cons 4.637500e-02   p_joint 3.605000e-03

Joint ci ratio: 1.401875e-01	ci left: 3.449408e-03	ci right 3.973962e-03	k: 778	n:210000
Cons ci ratio: 3.876884e-02	ci left: 4.552309e-02	ci right 4.732755e-02	k: 9748	n:210000
KS ci ratio: 1.730294e-01	ci left: 2.227125e-03	ci right 2.653461e-03	k: 511	n:210000
SPRR3   210000 perm   57 sec   (3666 perm/sec)   p_kst 2.433333e-03   p_cons 4.641905e-02   p_joint 3.704762e-03

Joint ci ratio: 1.442509e-01	ci left: 3.104075e-03	ci right 3.590974e-03	k: 735	n:220000
Cons ci ratio: 3.788378e-02	ci left: 4.552923e-02	ci right 4.729183e-02	k: 10209	n:220000
KS ci ratio: 1.602167e-01	ci left: 2.496194e-03	ci right 2.935253e-03	k: 596	n:220000
SPRR3   220000 perm   61 sec   (3614 perm/sec)   p_kst 2.709091e-03   p_cons 4.640455e-02   p_joint 3.340909e-03

Joint ci ratio: 1.429043e-01	ci left: 3.027790e-03	ci right 3.497910e-03	k: 749	n:230000
Cons ci ratio: 3.710596e-02	ci left: 4.541891e-02	ci right 4.714037e-02	k: 10643	n:230000
KS ci ratio: 1.574732e-01	ci left: 2.475336e-03	ci right 2.902567e-03	k: 617	n:230000
SPRR3   230000 perm   64 sec   (3566 perm/sec)   p_kst 2.682609e-03   p_cons 4.627391e-02   p_joint 3.256522e-03

Joint ci ratio: 1.471049e-01	ci left: 2.732949e-03	ci right 3.170858e-03	k: 707	n:240000
Cons ci ratio: 3.632432e-02	ci left: 4.543792e-02	ci right 4.712306e-02	k: 11106	n:240000
KS ci ratio: 1.540223e-01	ci left: 2.484318e-03	ci right 2.902836e-03	k: 645	n:240000
SPRR3   240000 perm   68 sec   (3507 perm/sec)   p_kst 2.687500e-03   p_cons 4.627500e-02   p_joint 2.945833e-03

Joint ci ratio: 1.444770e-01	ci left: 2.723836e-03	ci right 3.151816e-03	k: 733	n:250000
Cons ci ratio: 3.560138e-02	ci left: 4.542799e-02	ci right 4.707855e-02	k: 11562	n:250000
KS ci ratio: 1.518085e-01	ci left: 2.458035e-03	ci right 2.865632e-03	k: 664	n:250000
SPRR3   250000 perm   72 sec   (3463 perm/sec)   p_kst 2.656000e-03   p_cons 4.624800e-02   p_joint 2.932000e-03

Joint ci ratio: 1.423613e-01	ci left: 2.700650e-03	ci right 3.118245e-03	k: 755	n:260000
Cons ci ratio: 3.487738e-02	ci left: 4.552594e-02	ci right 4.714573e-02	k: 12046	n:260000
KS ci ratio: 1.489252e-01	ci left: 2.459733e-03	ci right 2.859174e-03	k: 690	n:260000
SPRR3   260000 perm   76 sec   (3418 perm/sec)   p_kst 2.653846e-03   p_cons 4.633077e-02   p_joint 2.903846e-03

Joint ci ratio: 1.444928e-01	ci left: 2.522051e-03	ci right 2.918372e-03	k: 733	n:270000
Cons ci ratio: 3.428486e-02	ci left: 4.538918e-02	ci right 4.697613e-02	k: 12468	n:270000
KS ci ratio: 1.468175e-01	ci left: 2.439963e-03	ci right 2.830094e-03	k: 710	n:270000
SPRR3   270000 perm   80 sec   (3376 perm/sec)   p_kst 2.629630e-03   p_cons 4.617778e-02   p_joint 2.714815e-03

Joint ci ratio: 1.460033e-01	ci left: 2.380341e-03	ci right 2.758644e-03	k: 718	n:280000
Cons ci ratio: 3.365045e-02	ci left: 4.544664e-02	ci right 4.700563e-02	k: 12942	n:280000
KS ci ratio: 1.441066e-01	ci left: 2.445741e-03	ci right 2.828955e-03	k: 737	n:280000
SPRR3   280000 perm   84 sec   (3335 perm/sec)   p_kst 2.632143e-03   p_cons 4.622143e-02   p_joint 2.564286e-03

Joint ci ratio: 1.450023e-01	ci left: 2.331483e-03	ci right 2.699261e-03	k: 728	n:290000
Cons ci ratio: 3.308880e-02	ci left: 4.539775e-02	ci right 4.692858e-02	k: 13386	n:290000
KS ci ratio: 1.415406e-01	ci left: 2.451182e-03	ci right 2.827832e-03	k: 764	n:290000
SPRR3   290000 perm   88 sec   (3294 perm/sec)   p_kst 2.634483e-03   p_cons 4.615862e-02   p_joint 2.510345e-03

Joint ci ratio: 1.457114e-01	ci left: 2.231274e-03	ci right 2.585115e-03	k: 721	n:300000
Cons ci ratio: 3.252357e-02	ci left: 4.543501e-02	ci right 4.694043e-02	k: 13855	n:300000
KS ci ratio: 1.393718e-01	ci left: 2.446664e-03	ci right 2.816381e-03	k: 788	n:300000
SPRR3   300000 perm   93 sec   (3216 perm/sec)   p_kst 2.626667e-03   p_cons 4.618333e-02   p_joint 2.403333e-03

Joint ci ratio: 1.470500e-01	ci left: 2.118889e-03	ci right 2.458265e-03	k: 708	n:310000
Cons ci ratio: 3.001317e-02	ci left: 5.137474e-02	ci right 5.294333e-02	k: 16168	n:310000
KS ci ratio: 1.372152e-01	ci left: 2.445595e-03	ci right 2.808964e-03	k: 813	n:310000
SPRR3   310000 perm   99 sec   (3119 perm/sec)   p_kst 2.622581e-03   p_cons 5.215484e-02   p_joint 2.283871e-03

Joint ci ratio: 1.589567e-01	ci left: 1.746081e-03	ci right 2.050553e-03	k: 606	n:320000
Cons ci ratio: 2.954570e-02	ci left: 5.136976e-02	ci right 5.291336e-02	k: 16684	n:320000
KS ci ratio: 1.348338e-01	ci left: 2.456712e-03	ci right 2.814890e-03	k: 842	n:320000
SPRR3   320000 perm   104 sec   (3086 perm/sec)   p_kst 2.631250e-03   p_cons 5.213750e-02   p_joint 1.893750e-03

Joint ci ratio: 1.593563e-01	ci left: 1.684436e-03	ci right 1.978968e-03	k: 603	n:330000
Cons ci ratio: 2.911013e-02	ci left: 5.132916e-02	ci right 5.284841e-02	k: 17188	n:330000
KS ci ratio: 1.330319e-01	ci left: 2.449627e-03	ci right 2.801622e-03	k: 865	n:330000
SPRR3   330000 perm   108 sec   (3052 perm/sec)   p_kst 2.621212e-03   p_cons 5.208485e-02   p_joint 1.827273e-03

Joint ci ratio: 1.577979e-01	ci left: 1.668786e-03	ci right 1.957458e-03	k: 615	n:340000
Cons ci ratio: 2.865997e-02	ci left: 5.140503e-02	ci right 5.290261e-02	k: 17731	n:340000
KS ci ratio: 1.310052e-01	ci left: 2.454369e-03	ci right 2.801254e-03	k: 892	n:340000
SPRR3   340000 perm   113 sec   (3019 perm/sec)   p_kst 2.623529e-03   p_cons 5.215000e-02   p_joint 1.808824e-03

Joint ci ratio: 1.246621e-01	ci left: 2.641481e-03	ci right 2.995402e-03	k: 985	n:350000
Cons ci ratio: 2.823251e-02	ci left: 5.146822e-02	ci right 5.294492e-02	k: 18271	n:350000
KS ci ratio: 1.294925e-01	ci left: 2.442288e-03	ci right 2.783173e-03	k: 913	n:350000
SPRR3   350000 perm   117 sec   (2985 perm/sec)   p_kst 2.608571e-03   p_cons 5.220286e-02   p_joint 2.814286e-03

Joint ci ratio: 1.234181e-01	ci left: 2.621937e-03	ci right 2.969477e-03	k: 1005	n:360000
Cons ci ratio: 2.783299e-02	ci left: 5.149494e-02	ci right 5.295116e-02	k: 18799	n:360000
KS ci ratio: 1.274853e-01	ci left: 2.452413e-03	ci right 2.789005e-03	k: 942	n:360000
SPRR3   360000 perm   122 sec   (2954 perm/sec)   p_kst 2.616667e-03   p_cons 5.221944e-02   p_joint 2.791667e-03

Joint ci ratio: 1.332825e-01	ci left: 2.176944e-03	ci right 2.490391e-03	k: 862	n:370000
Cons ci ratio: 2.743649e-02	ci left: 5.156869e-02	ci right 5.300590e-02	k: 19345	n:370000
KS ci ratio: 1.252461e-01	ci left: 2.475121e-03	ci right 2.808420e-03	k: 976	n:370000
SPRR3   370000 perm   127 sec   (2922 perm/sec)   p_kst 2.637838e-03   p_cons 5.228378e-02   p_joint 2.329730e-03

Joint ci ratio: 1.319899e-01	ci left: 2.162907e-03	ci right 2.471076e-03	k: 879	n:380000
Cons ci ratio: 2.708089e-02	ci left: 5.154980e-02	ci right 5.296757e-02	k: 19857	n:380000
KS ci ratio: 1.241094e-01	ci left: 2.455876e-03	ci right 2.783361e-03	k: 994	n:380000
SPRR3   380000 perm   131 sec   (2892 perm/sec)   p_kst 2.615789e-03   p_cons 5.225526e-02   p_joint 2.313158e-03

Joint ci ratio: 1.299381e-01	ci left: 2.176892e-03	ci right 2.481860e-03	k: 907	n:390000
Cons ci ratio: 2.671940e-02	ci left: 5.160333e-02	ci right 5.300333e-02	k: 20397	n:390000
KS ci ratio: 1.226395e-01	ci left: 2.452544e-03	ci right 2.775430e-03	k: 1018	n:390000
SPRR3   390000 perm   136 sec   (2862 perm/sec)   p_kst 2.610256e-03   p_cons 5.230000e-02   p_joint 2.325641e-03

Joint ci ratio: 1.299419e-01	ci left: 2.122466e-03	ci right 2.419818e-03	k: 907	n:400000
Cons ci ratio: 2.639462e-02	ci left: 5.156983e-02	ci right 5.295166e-02	k: 20903	n:400000
KS ci ratio: 1.216894e-01	ci left: 2.430006e-03	ci right 2.747268e-03	k: 1034	n:400000
SPRR3   400000 perm   141 sec   (2834 perm/sec)   p_kst 2.585000e-03   p_cons 5.225750e-02   p_joint 2.267500e-03

Joint ci ratio: 1.307416e-01	ci left: 2.044738e-03	ci right 2.333101e-03	k: 896	n:410000
Cons ci ratio: 2.605895e-02	ci left: 5.162291e-02	ci right 5.298831e-02	k: 21444	n:410000
KS ci ratio: 1.207035e-01	ci left: 2.410942e-03	ci right 2.722983e-03	k: 1051	n:410000
SPRR3   410000 perm   146 sec   (2806 perm/sec)   p_kst 2.563415e-03   p_cons 5.230244e-02   p_joint 2.185366e-03

Joint ci ratio: 1.291672e-01	ci left: 2.046732e-03	ci right 2.331634e-03	k: 918	n:420000
Cons ci ratio: 2.576483e-02	ci left: 5.156234e-02	ci right 5.291052e-02	k: 21938	n:420000
KS ci ratio: 1.197411e-01	ci left: 2.392797e-03	ci right 2.699845e-03	k: 1068	n:420000
SPRR3   420000 perm   151 sec   (2778 perm/sec)   p_kst 2.542857e-03   p_cons 5.223333e-02   p_joint 2.185714e-03

Joint ci ratio: 1.300240e-01	ci left: 1.972127e-03	ci right 2.248604e-03	k: 906	n:430000
Cons ci ratio: 2.547507e-02	ci left: 5.152547e-02	ci right 5.285731e-02	k: 22441	n:430000
KS ci ratio: 1.184194e-01	ci left: 2.391301e-03	ci right 2.694533e-03	k: 1092	n:430000
SPRR3   430000 perm   156 sec   (2749 perm/sec)   p_kst 2.539535e-03   p_cons 5.218837e-02   p_joint 2.106977e-03

Joint ci ratio: 1.284058e-01	ci left: 1.977889e-03	ci right 2.251461e-03	k: 929	n:440000
Cons ci ratio: 2.516999e-02	ci left: 5.158751e-02	ci right 5.290476e-02	k: 22987	n:440000
KS ci ratio: 1.170355e-01	ci left: 2.394305e-03	ci right 2.694124e-03	k: 1118	n:440000
SPRR3   440000 perm   162 sec   (2722 perm/sec)   p_kst 2.540909e-03   p_cons 5.224318e-02   p_joint 2.111364e-03

Joint ci ratio: 1.524737e-01	ci left: 1.354827e-03	ci right 1.580559e-03	k: 659	n:450000
Cons ci ratio: 2.651729e-02	ci left: 4.569890e-02	ci right 4.692918e-02	k: 20840	n:450000
KS ci ratio: 1.154466e-01	ci left: 2.407985e-03	ci right 2.705145e-03	k: 1149	n:450000
SPRR3   450000 perm   167 sec   (2695 perm/sec)   p_kst 2.553333e-03   p_cons 4.631111e-02   p_joint 1.464444e-03

Joint ci ratio: 1.517868e-01	ci left: 1.337921e-03	ci right 1.559739e-03	k: 665	n:460000
Cons ci ratio: 2.624048e-02	ci left: 4.566212e-02	ci right 4.687839e-02	k: 21283	n:460000
KS ci ratio: 1.144073e-01	ci left: 2.399977e-03	ci right 2.693302e-03	k: 1170	n:460000
SPRR3   460000 perm   172 sec   (2667 perm/sec)   p_kst 2.543478e-03   p_cons 4.626739e-02   p_joint 1.445652e-03

Joint ci ratio: 1.498854e-01	ci left: 1.344260e-03	ci right 1.564087e-03	k: 682	n:470000
Cons ci ratio: 2.595463e-02	ci left: 4.568618e-02	ci right 4.688963e-02	k: 21754	n:470000
KS ci ratio: 1.130632e-01	ci left: 2.406793e-03	ci right 2.697265e-03	k: 1198	n:470000
SPRR3   470000 perm   178 sec   (2641 perm/sec)   p_kst 2.548936e-03   p_cons 4.628511e-02   p_joint 1.451064e-03

Joint ci ratio: 1.476320e-01	ci left: 1.358377e-03	ci right 1.576879e-03	k: 703	n:480000
Cons ci ratio: 2.486906e-02	ci left: 4.860224e-02	ci right 4.982821e-02	k: 23622	n:480000
KS ci ratio: 1.121787e-01	ci left: 2.395119e-03	ci right 2.681771e-03	k: 1217	n:480000
SPRR3   480000 perm   183 sec   (2617 perm/sec)   p_kst 2.535417e-03   p_cons 4.921250e-02   p_joint 1.464583e-03

Joint ci ratio: 1.462878e-01	ci left: 1.356210e-03	ci right 1.572203e-03	k: 716	n:490000
Cons ci ratio: 2.463126e-02	ci left: 4.854331e-02	ci right 4.975591e-02	k: 24082	n:490000
KS ci ratio: 1.110001e-01	ci left: 2.397820e-03	ci right 2.681583e-03	k: 1243	n:490000
SPRR3   490000 perm   189 sec   (2592 perm/sec)   p_kst 2.536735e-03   p_cons 4.914694e-02   p_joint 1.461224e-03

Joint ci ratio: 1.458830e-01	ci left: 1.336792e-03	ci right 1.549052e-03	k: 720	n:500000
Cons ci ratio: 2.437822e-02	ci left: 4.857030e-02	ci right 4.977093e-02	k: 24584	n:500000
KS ci ratio: 1.097713e-01	ci left: 2.404318e-03	ci right 2.685496e-03	k: 1271	n:500000
SPRR3   500000 perm   195 sec   (2568 perm/sec)   p_kst 2.542000e-03   p_cons 4.916800e-02   p_joint 1.440000e-03

Joint ci ratio: 1.458851e-01	ci left: 1.310579e-03	ci right 1.518681e-03	k: 720	n:510000
Cons ci ratio: 2.413535e-02	ci left: 4.858654e-02	ci right 4.977545e-02	k: 25081	n:510000
KS ci ratio: 1.084571e-01	ci left: 2.416300e-03	ci right 2.695281e-03	k: 1302	n:510000
SPRR3   510000 perm   201 sec   (2543 perm/sec)   p_kst 2.552941e-03   p_cons 4.917843e-02   p_joint 1.411765e-03

Joint ci ratio: 1.424652e-01	ci left: 1.350258e-03	ci right 1.559206e-03	k: 755	n:520000
Cons ci ratio: 2.390304e-02	ci left: 4.858883e-02	ci right 4.976620e-02	k: 25571	n:520000
KS ci ratio: 1.072292e-01	ci left: 2.425970e-03	ci right 2.702696e-03	k: 1332	n:520000
SPRR3   520000 perm   206 sec   (2519 perm/sec)   p_kst 2.561538e-03   p_cons 4.917500e-02   p_joint 1.451923e-03

Joint ci ratio: 1.409810e-01	ci left: 1.353899e-03	ci right 1.561046e-03	k: 771	n:530000
Cons ci ratio: 2.368640e-02	ci left: 4.855544e-02	ci right 4.972119e-02	k: 26042	n:530000
KS ci ratio: 1.062769e-01	ci left: 2.424271e-03	ci right 2.698193e-03	k: 1356	n:530000
SPRR3   530000 perm   212 sec   (2496 perm/sec)   p_kst 2.558491e-03   p_cons 4.913585e-02   p_joint 1.454717e-03

Joint ci ratio: 1.409829e-01	ci left: 1.328826e-03	ci right 1.532139e-03	k: 771	n:540000
Cons ci ratio: 2.347833e-02	ci left: 4.851229e-02	ci right 4.966663e-02	k: 26507	n:540000
KS ci ratio: 1.053878e-01	ci left: 2.420842e-03	ci right 2.691947e-03	k: 1379	n:540000
SPRR3   540000 perm   218 sec   (2472 perm/sec)   p_kst 2.553704e-03   p_cons 4.908704e-02   p_joint 1.427778e-03

Joint ci ratio: 1.399895e-01	ci left: 1.323962e-03	ci right 1.524985e-03	k: 782	n:550000
Cons ci ratio: 2.328246e-02	ci left: 4.844363e-02	ci right 4.958659e-02	k: 26957	n:550000
KS ci ratio: 1.047455e-01	ci left: 2.406922e-03	ci right 2.674724e-03	k: 1396	n:550000
SPRR3   550000 perm   224 sec   (2451 perm/sec)   p_kst 2.538182e-03   p_cons 4.901273e-02   p_joint 1.421818e-03

Joint ci ratio: 1.391046e-01	ci left: 1.317554e-03	ci right 1.516233e-03	k: 792	n:560000
Cons ci ratio: 2.306311e-02	ci left: 4.849111e-02	ci right 4.962427e-02	k: 27471	n:560000
KS ci ratio: 1.041147e-01	ci left: 2.393505e-03	ci right 2.658112e-03	k: 1413	n:560000
SPRR3   560000 perm   231 sec   (2429 perm/sec)   p_kst 2.523214e-03   p_cons 4.905536e-02   p_joint 1.414286e-03

Joint ci ratio: 1.382362e-01	ci left: 1.311373e-03	ci right 1.507785e-03	k: 802	n:570000
Cons ci ratio: 2.285800e-02	ci left: 4.850383e-02	ci right 4.962707e-02	k: 27966	n:570000
KS ci ratio: 1.030987e-01	ci left: 2.399364e-03	ci right 2.661874e-03	k: 1441	n:570000
SPRR3   570000 perm   237 sec   (2408 perm/sec)   p_kst 2.528070e-03   p_cons 4.906316e-02   p_joint 1.407018e-03

Joint ci ratio: 1.383242e-01	ci left: 1.287098e-03	ci right 1.480007e-03	k: 801	n:580000
Cons ci ratio: 2.267210e-02	ci left: 4.845956e-02	ci right 4.957254e-02	k: 28428	n:580000
KS ci ratio: 1.027089e-01	ci left: 2.376471e-03	ci right 2.635434e-03	k: 1452	n:580000
SPRR3   580000 perm   243 sec   (2388 perm/sec)   p_kst 2.503448e-03   p_cons 4.901379e-02   p_joint 1.381034e-03

Joint ci ratio: 1.366303e-01	ci left: 1.298016e-03	ci right 1.489985e-03	k: 821	n:590000
Cons ci ratio: 2.247716e-02	ci left: 4.847246e-02	ci right 4.957604e-02	k: 28923	n:590000
KS ci ratio: 1.018711e-01	ci left: 2.375830e-03	ci right 2.632484e-03	k: 1476	n:590000
SPRR3   590000 perm   249 sec   (2368 perm/sec)   p_kst 2.501695e-03   p_cons 4.902203e-02   p_joint 1.391525e-03

Joint ci ratio: 1.182456e-01	ci left: 1.720200e-03	ci right 1.937988e-03	k: 1096	n:600000
Cons ci ratio: 2.303034e-02	ci left: 4.553097e-02	ci right 4.659342e-02	k: 27636	n:600000
KS ci ratio: 1.011211e-01	ci left: 2.371968e-03	ci right 2.626207e-03	k: 1498	n:600000
SPRR3   600000 perm   256 sec   (2348 perm/sec)   p_kst 2.496667e-03   p_cons 4.606000e-02   p_joint 1.826667e-03

Joint ci ratio: 1.197887e-01	ci left: 1.647461e-03	ci right 1.858955e-03	k: 1068	n:610000
Cons ci ratio: 2.284276e-02	ci left: 4.552781e-02	ci right 4.658142e-02	k: 28092	n:610000
KS ci ratio: 1.002553e-01	ci left: 2.374633e-03	ci right 2.626850e-03	k: 1524	n:610000
SPRR3   610000 perm   262 sec   (2327 perm/sec)   p_kst 2.498361e-03   p_cons 4.605246e-02   p_joint 1.750820e-03

Joint ci ratio: 1.289322e-01	ci left: 1.392709e-03	ci right 1.586191e-03	k: 922	n:620000
Cons ci ratio: 2.265636e-02	ci left: 4.553763e-02	ci right 4.658275e-02	k: 28556	n:620000
KS ci ratio: 9.937923e-02	ci left: 2.378794e-03	ci right 2.629117e-03	k: 1551	n:620000
SPRR3   620000 perm   269 sec   (2307 perm/sec)   p_kst 2.501613e-03   p_cons 4.605806e-02   p_joint 1.487097e-03

Joint ci ratio: 1.292144e-01	ci left: 1.364457e-03	ci right 1.554460e-03	k: 918	n:630000
Cons ci ratio: 2.248257e-02	ci left: 4.551558e-02	ci right 4.655209e-02	k: 29000	n:630000
KS ci ratio: 9.871394e-02	ci left: 2.373543e-03	ci right 2.621544e-03	k: 1572	n:630000
SPRR3   630000 perm   275 sec   (2287 perm/sec)   p_kst 2.495238e-03   p_cons 4.603175e-02   p_joint 1.457143e-03

Joint ci ratio: 1.289352e-01	ci left: 1.349185e-03	ci right 1.536624e-03	k: 922	n:640000
Cons ci ratio: 2.229764e-02	ci left: 4.555332e-02	ci right 4.658204e-02	k: 29482	n:640000
KS ci ratio: 9.803102e-02	ci left: 2.369985e-03	ci right 2.615803e-03	k: 1594	n:640000
SPRR3   640000 perm   282 sec   (2267 perm/sec)   p_kst 2.490625e-03   p_cons 4.606562e-02   p_joint 1.440625e-03

Joint ci ratio: 1.285883e-01	ci left: 1.335872e-03	ci right 1.520925e-03	k: 927	n:650000
Cons ci ratio: 2.213036e-02	ci left: 4.553790e-02	ci right 4.655846e-02	k: 29930	n:650000
KS ci ratio: 9.754367e-02	ci left: 2.357536e-03	ci right 2.600778e-03	k: 1610	n:650000
SPRR3   650000 perm   289 sec   (2249 perm/sec)   p_kst 2.476923e-03   p_cons 4.604615e-02   p_joint 1.426154e-03

Joint ci ratio: 1.295722e-01	ci left: 1.295103e-03	ci right 1.475986e-03	k: 913	n:660000
Cons ci ratio: 2.195884e-02	ci left: 4.555462e-02	ci right 4.656755e-02	k: 30399	n:660000
KS ci ratio: 9.694412e-02	ci left: 2.351382e-03	ci right 2.592412e-03	k: 1630	n:660000
SPRR3   660000 perm   296 sec   (2230 perm/sec)   p_kst 2.469697e-03   p_cons 4.605909e-02   p_joint 1.383333e-03

Joint ci ratio: 1.290795e-01	ci left: 1.285882e-03	ci right 1.464742e-03	k: 920	n:670000
Cons ci ratio: 2.180124e-02	ci left: 4.553079e-02	ci right 4.653583e-02	k: 30841	n:670000
KS ci ratio: 9.615137e-02	ci left: 2.355612e-03	ci right 2.594991e-03	k: 1657	n:670000
SPRR3   670000 perm   303 sec   (2212 perm/sec)   p_kst 2.473134e-03   p_cons 4.603134e-02   p_joint 1.373134e-03

Joint ci ratio: 1.305801e-01	ci left: 1.237091e-03	ci right 1.411320e-03	k: 899	n:680000
Cons ci ratio: 2.165352e-02	ci left: 4.548135e-02	ci right 4.647841e-02	k: 31265	n:680000
KS ci ratio: 9.540613e-02	ci left: 2.358291e-03	ci right 2.595980e-03	k: 1683	n:680000
SPRR3   680000 perm   310 sec   (2195 perm/sec)   p_kst 2.475000e-03   p_cons 4.597794e-02   p_joint 1.322059e-03

Joint ci ratio: 1.297895e-01	ci left: 1.234585e-03	ci right 1.407327e-03	k: 910	n:690000
Cons ci ratio: 2.150876e-02	ci left: 4.543336e-02	ci right 4.642263e-02	k: 31689	n:690000
KS ci ratio: 9.470572e-02	ci left: 2.359483e-03	ci right 2.595450e-03	k: 1708	n:690000
SPRR3   690000 perm   317 sec   (2178 perm/sec)   p_kst 2.475362e-03   p_cons 4.592609e-02   p_joint 1.318841e-03

Joint ci ratio: 1.285949e-01	ci left: 1.240449e-03	ci right 1.412292e-03	k: 927	n:700000
Cons ci ratio: 2.136059e-02	ci left: 4.541235e-02	ci right 4.639427e-02	k: 32131	n:700000
KS ci ratio: 9.385787e-02	ci left: 2.369018e-03	ci right 2.603701e-03	k: 1739	n:700000
SPRR3   700000 perm   324 sec   (2162 perm/sec)   p_kst 2.484286e-03   p_cons 4.590143e-02   p_joint 1.324286e-03

Joint ci ratio: 1.279762e-01	ci left: 1.235247e-03	ci right 1.405484e-03	k: 936	n:710000
Cons ci ratio: 2.121441e-02	ci left: 4.539616e-02	ci right 4.637093e-02	k: 32576	n:710000
KS ci ratio: 9.324375e-02	ci left: 2.367288e-03	ci right 2.600181e-03	k: 1762	n:710000
SPRR3   710000 perm   331 sec   (2145 perm/sec)   p_kst 2.481690e-03   p_cons 4.588169e-02   p_joint 1.318310e-03

Joint ci ratio: 1.268305e-01	ci left: 1.240949e-03	ci right 1.410326e-03	k: 953	n:720000
Cons ci ratio: 2.106518e-02	ci left: 4.540532e-02	ci right 4.637334e-02	k: 33039	n:720000
KS ci ratio: 9.261554e-02	ci left: 2.366968e-03	ci right 2.598175e-03	k: 1786	n:720000
SPRR3   720000 perm   338 sec   (2128 perm/sec)   p_kst 2.480556e-03   p_cons 4.588750e-02   p_joint 1.323611e-03

Joint ci ratio: 1.268316e-01	ci left: 1.223949e-03	ci right 1.391007e-03	k: 953	n:730000
Cons ci ratio: 2.091971e-02	ci left: 4.541152e-02	ci right 4.637291e-02	k: 33500	n:730000
KS ci ratio: 9.212744e-02	ci left: 2.359969e-03	ci right 2.589213e-03	k: 1805	n:730000
SPRR3   730000 perm   346 sec   (2112 perm/sec)   p_kst 2.472603e-03   p_cons 4.589041e-02   p_joint 1.305479e-03

Joint ci ratio: 1.272340e-01	ci left: 1.199558e-03	ci right 1.363845e-03	k: 947	n:740000
Cons ci ratio: 2.078427e-02	ci left: 4.538800e-02	ci right 4.634259e-02	k: 33939	n:740000
KS ci ratio: 9.144627e-02	ci left: 2.363727e-03	ci right 2.591547e-03	k: 1832	n:740000
SPRR3   740000 perm   353 sec   (2096 perm/sec)   p_kst 2.475676e-03   p_cons 4.586351e-02   p_joint 1.279730e-03

Joint ci ratio: 1.264364e-01	ci left: 1.199056e-03	ci right 1.362168e-03	k: 959	n:750000
Cons ci ratio: 2.064168e-02	ci left: 4.540625e-02	ci right 4.635460e-02	k: 34409	n:750000
KS ci ratio: 9.075553e-02	ci left: 2.368694e-03	ci right 2.595176e-03	k: 1860	n:750000
SPRR3   750000 perm   361 sec   (2080 perm/sec)   p_kst 2.480000e-03   p_cons 4.587867e-02   p_joint 1.278667e-03

Joint ci ratio: 1.253955e-01	ci left: 1.203669e-03	ci right 1.365960e-03	k: 975	n:760000
Cons ci ratio: 2.050598e-02	ci left: 4.540702e-02	ci right 4.634908e-02	k: 34866	n:760000
KS ci ratio: 9.012806e-02	ci left: 2.370963e-03	ci right 2.596013e-03	k: 1886	n:760000
SPRR3   760000 perm   368 sec   (2064 perm/sec)   p_kst 2.481579e-03   p_cons 4.587632e-02   p_joint 1.282895e-03

Joint ci ratio: 1.245686e-01	ci left: 1.204392e-03	ci right 1.365631e-03	k: 988	n:770000
Cons ci ratio: 2.037081e-02	ci left: 4.541684e-02	ci right 4.635281e-02	k: 35330	n:770000
KS ci ratio: 8.948997e-02	ci left: 2.374449e-03	ci right 2.598151e-03	k: 1913	n:770000
SPRR3   770000 perm   376 sec   (2049 perm/sec)   p_kst 2.484416e-03   p_cons 4.588312e-02   p_joint 1.283117e-03

Joint ci ratio: 1.241930e-01	ci left: 1.196404e-03	ci right 1.356055e-03	k: 994	n:780000
Cons ci ratio: 2.024510e-02	ci left: 4.539708e-02	ci right 4.632681e-02	k: 35771	n:780000
KS ci ratio: 8.870505e-02	ci left: 2.386627e-03	ci right 2.609401e-03	k: 1947	n:780000
SPRR3   780000 perm   384 sec   (2033 perm/sec)   p_kst 2.496154e-03   p_cons 4.586026e-02   p_joint 1.274359e-03

Joint ci ratio: 1.233895e-01	ci left: 1.197206e-03	ci right 1.355855e-03	k: 1007	n:790000
Cons ci ratio: 2.010598e-02	ci left: 4.544587e-02	ci right 4.637012e-02	k: 36266	n:790000
KS ci ratio: 8.816366e-02	ci left: 2.386124e-03	ci right 2.607422e-03	k: 1971	n:790000
SPRR3   790000 perm   392 sec   (2017 perm/sec)   p_kst 2.494937e-03   p_cons 4.590633e-02   p_joint 1.274684e-03

Joint ci ratio: 1.226616e-01	ci left: 1.196779e-03	ci right 1.354368e-03	k: 1019	n:800000
Cons ci ratio: 1.997538e-02	ci left: 4.546857e-02	ci right 4.638722e-02	k: 36741	n:800000
KS ci ratio: 8.750033e-02	ci left: 2.392974e-03	ci right 2.613153e-03	k: 2001	n:800000
SPRR3   800000 perm   400 sec   (2002 perm/sec)   p_kst 2.501250e-03   p_cons 4.592625e-02   p_joint 1.273750e-03

Joint ci ratio: 1.236990e-01	ci left: 1.161662e-03	ci right 1.316015e-03	k: 1002	n:810000
Cons ci ratio: 1.984842e-02	ci left: 4.548582e-02	ci right 4.639891e-02	k: 37212	n:810000
KS ci ratio: 8.683032e-02	ci left: 2.400869e-03	ci right 2.619997e-03	k: 2032	n:810000
SPRR3   810000 perm   408 sec   (1987 perm/sec)   p_kst 2.508642e-03   p_cons 4.594074e-02   p_joint 1.237037e-03

Joint ci ratio: 1.245105e-01	ci left: 1.132133e-03	ci right 1.283621e-03	k: 989	n:820000
Cons ci ratio: 1.972329e-02	ci left: 4.550510e-02	ci right 4.641275e-02	k: 37685	n:820000
KS ci ratio: 8.640661e-02	ci left: 2.395452e-03	ci right 2.612964e-03	k: 2052	n:820000
SPRR3   820000 perm   416 sec   (1973 perm/sec)   p_kst 2.502439e-03   p_cons 4.595732e-02   p_joint 1.206098e-03

Joint ci ratio: 1.235161e-01	ci left: 1.137172e-03	ci right 1.288031e-03	k: 1005	n:830000
Cons ci ratio: 1.959916e-02	ci left: 4.552992e-02	ci right 4.643229e-02	k: 38163	n:830000
KS ci ratio: 8.590600e-02	ci left: 2.394884e-03	ci right 2.611021e-03	k: 2076	n:830000
SPRR3   830000 perm   424 sec   (1959 perm/sec)   p_kst 2.501205e-03   p_cons 4.597952e-02   p_joint 1.210843e-03

Joint ci ratio: 1.227859e-01	ci left: 1.137480e-03	ci right 1.287423e-03	k: 1017	n:840000
Cons ci ratio: 1.948368e-02	ci left: 4.552573e-02	ci right 4.642264e-02	k: 38617	n:840000
KS ci ratio: 8.537326e-02	ci left: 2.396663e-03	ci right 2.611553e-03	k: 2102	n:840000
SPRR3   840000 perm   432 sec   (1945 perm/sec)   p_kst 2.502381e-03   p_cons 4.597262e-02   p_joint 1.210714e-03

Joint ci ratio: 1.229683e-01	ci left: 1.120676e-03	ci right 1.268639e-03	k: 1014	n:850000
Cons ci ratio: 1.936010e-02	ci left: 4.556733e-02	ci right 4.645930e-02	k: 39110	n:850000
KS ci ratio: 8.483034e-02	ci left: 2.399556e-03	ci right 2.613269e-03	k: 2129	n:850000
SPRR3   850000 perm   440 sec   (1931 perm/sec)   p_kst 2.504706e-03   p_cons 4.601176e-02   p_joint 1.192941e-03

Joint ci ratio: 1.222478e-01	ci left: 1.121170e-03	ci right 1.268269e-03	k: 1026	n:860000
Cons ci ratio: 1.924164e-02	ci left: 4.559524e-02	ci right 4.648224e-02	k: 39592	n:860000
KS ci ratio: 8.441542e-02	ci left: 2.395555e-03	ci right 2.607818e-03	k: 2150	n:860000
SPRR3   860000 perm   449 sec   (1917 perm/sec)   p_kst 2.500000e-03   p_cons 4.603721e-02   p_joint 1.193023e-03

Joint ci ratio: 1.214229e-01	ci left: 1.123885e-03	ci right 1.270273e-03	k: 1040	n:870000
Cons ci ratio: 1.912758e-02	ci left: 4.561223e-02	ci right 4.649424e-02	k: 40065	n:870000
KS ci ratio: 8.394844e-02	ci left: 2.395026e-03	ci right 2.606010e-03	k: 2174	n:870000
SPRR3   870000 perm   457 sec   (1904 perm/sec)   p_kst 2.498851e-03   p_cons 4.605172e-02   p_joint 1.195402e-03

Joint ci ratio: 1.218935e-01	ci left: 1.102299e-03	ci right 1.246472e-03	k: 1032	n:880000
Cons ci ratio: 1.902783e-02	ci left: 4.557229e-02	ci right 4.644888e-02	k: 40488	n:880000
KS ci ratio: 8.360354e-02	ci left: 2.387835e-03	ci right 2.597279e-03	k: 2192	n:880000
SPRR3   880000 perm   466 sec   (1890 perm/sec)   p_kst 2.490909e-03   p_cons 4.600909e-02   p_joint 1.172727e-03

Joint ci ratio: 1.215414e-01	ci left: 1.096449e-03	ci right 1.239413e-03	k: 1038	n:890000
Cons ci ratio: 1.892283e-02	ci left: 4.556458e-02	ci right 4.643613e-02	k: 40939	n:890000
KS ci ratio: 8.318746e-02	ci left: 2.385209e-03	ci right 2.593331e-03	k: 2214	n:890000
SPRR3   890000 perm   474 sec   (1876 perm/sec)   p_kst 2.487640e-03   p_cons 4.599888e-02   p_joint 1.166292e-03

Joint ci ratio: 1.108417e-01	ci left: 1.310840e-03	ci right 1.465731e-03	k: 1248	n:900000
Cons ci ratio: 1.881312e-02	ci left: 4.558692e-02	ci right 4.645379e-02	k: 41417	n:900000
KS ci ratio: 8.287042e-02	ci left: 2.377203e-03	ci right 2.583798e-03	k: 2231	n:900000
SPRR3   900000 perm   485 sec   (1855 perm/sec)   p_kst 2.478889e-03   p_cons 4.601889e-02   p_joint 1.386667e-03

Joint ci ratio: 1.105769e-01	ci left: 1.302846e-03	ci right 1.456400e-03	k: 1254	n:910000
Cons ci ratio: 1.870507e-02	ci left: 4.560987e-02	ci right 4.647214e-02	k: 41896	n:910000
KS ci ratio: 8.237359e-02	ci left: 2.380137e-03	ci right 2.585687e-03	k: 2258	n:910000
SPRR3   910000 perm   495 sec   (1840 perm/sec)   p_kst 2.481319e-03   p_cons 4.603956e-02   p_joint 1.378022e-03

Joint ci ratio: 1.102265e-01	ci left: 1.297140e-03	ci right 1.449505e-03	k: 1262	n:920000
Cons ci ratio: 1.860277e-02	ci left: 4.561395e-02	ci right 4.647152e-02	k: 42358	n:920000
KS ci ratio: 8.188559e-02	ci left: 2.383011e-03	ci right 2.587532e-03	k: 2285	n:920000
SPRR3   920000 perm   503 sec   (1829 perm/sec)   p_kst 2.483696e-03   p_cons 4.604130e-02   p_joint 1.371739e-03

Joint ci ratio: 1.096636e-01	ci left: 1.296786e-03	ci right 1.448282e-03	k: 1275	n:930000
Cons ci ratio: 1.849737e-02	ci left: 4.564042e-02	ci right 4.649359e-02	k: 42841	n:930000
KS ci ratio: 8.151222e-02	ci left: 2.379507e-03	ci right 2.582751e-03	k: 2306	n:930000
SPRR3   930000 perm   512 sec   (1818 perm/sec)   p_kst 2.479570e-03   p_cons 4.606559e-02   p_joint 1.370968e-03

Joint ci ratio: 1.096644e-01	ci left: 1.282990e-03	ci right 1.432875e-03	k: 1275	n:940000
Cons ci ratio: 1.839041e-02	ci left: 4.568224e-02	ci right 4.653120e-02	k: 43339	n:940000
KS ci ratio: 8.109154e-02	ci left: 2.379206e-03	ci right 2.581326e-03	k: 2330	n:940000
SPRR3   940000 perm   520 sec   (1806 perm/sec)   p_kst 2.478723e-03   p_cons 4.610532e-02   p_joint 1.356383e-03

Joint ci ratio: 1.091100e-01	ci left: 1.282795e-03	ci right 1.431851e-03	k: 1288	n:950000
Cons ci ratio: 1.829491e-02	ci left: 4.567708e-02	ci right 4.652148e-02	k: 43793	n:950000
KS ci ratio: 8.062585e-02	ci left: 2.382008e-03	ci right 2.583150e-03	k: 2357	n:950000
SPRR3   950000 perm   529 sec   (1795 perm/sec)   p_kst 2.481053e-03   p_cons 4.609789e-02   p_joint 1.355789e-03

Joint ci ratio: 1.099250e-01	ci left: 1.250182e-03	ci right 1.396604e-03	k: 1269	n:960000
Cons ci ratio: 1.820951e-02	ci left: 4.563055e-02	ci right 4.647011e-02	k: 44207	n:960000
KS ci ratio: 8.013441e-02	ci left: 2.386797e-03	ci right 2.587057e-03	k: 2386	n:960000
SPRR3   960000 perm   538 sec   (1784 perm/sec)   p_kst 2.485417e-03   p_cons 4.604896e-02   p_joint 1.321875e-03

Joint ci ratio: 1.097097e-01	ci left: 1.242306e-03	ci right 1.387502e-03	k: 1274	n:970000
Cons ci ratio: 1.811083e-02	ci left: 4.565478e-02	ci right 4.649020e-02	k: 44689	n:970000
KS ci ratio: 7.978438e-02	ci left: 2.383407e-03	ci right 2.582469e-03	k: 2407	n:970000
SPRR3   970000 perm   547 sec   (1773 perm/sec)   p_kst 2.481443e-03   p_cons 4.607113e-02   p_joint 1.313402e-03

Joint ci ratio: 1.094101e-01	ci left: 1.236576e-03	ci right 1.380683e-03	k: 1281	n:980000
Cons ci ratio: 1.801605e-02	ci left: 4.566736e-02	ci right 4.649859e-02	k: 45160	n:980000
KS ci ratio: 7.940613e-02	ci left: 2.382089e-03	ci right 2.580054e-03	k: 2430	n:980000
SPRR3   980000 perm   556 sec   (1763 perm/sec)   p_kst 2.479592e-03   p_cons 4.608163e-02   p_joint 1.307143e-03

Joint ci ratio: 1.091130e-01	ci left: 1.230963e-03	ci right 1.374001e-03	k: 1288	n:990000
Cons ci ratio: 1.792644e-02	ci left: 4.566159e-02	ci right 4.648854e-02	k: 45613	n:990000
KS ci ratio: 7.887228e-02	ci left: 2.390701e-03	ci right 2.587985e-03	k: 2463	n:990000
SPRR3   990000 perm   565 sec   (1751 perm/sec)   p_kst 2.487879e-03   p_cons 4.607374e-02   p_joint 1.301010e-03

Joint ci ratio: 1.090714e-01	ci left: 1.219626e-03	ci right 1.361288e-03	k: 1289	n:1000000
Cons ci ratio: 1.784404e-02	ci left: 4.562707e-02	ci right 4.644956e-02	k: 46037	n:1000000
KS ci ratio: 7.864959e-02	ci left: 2.380518e-03	ci right 2.576381e-03	k: 2477	n:1000000
SPRR3   1000000 perm   574 sec   (1741 perm/sec)   p_kst 2.477000e-03   p_cons 4.603700e-02   p_joint 1.289000e-03

Joint ci ratio: 1.092843e-01	ci left: 1.202734e-03	ci right 1.342725e-03	k: 1284	n:1010000
Cons ci ratio: 1.774896e-02	ci left: 4.566128e-02	ci right 4.647994e-02	k: 46530	n:1010000
KS ci ratio: 7.828718e-02	ci left: 2.379274e-03	ci right 2.574092e-03	k: 2500	n:1010000
SPRR3   1010000 perm   584 sec   (1730 perm/sec)   p_kst 2.475248e-03   p_cons 4.606931e-02   p_joint 1.271287e-03

Joint ci ratio: 1.094130e-01	ci left: 1.188082e-03	ci right 1.326540e-03	k: 1281	n:1020000
Cons ci ratio: 1.765263e-02	ci left: 4.570848e-02	ci right 4.652351e-02	k: 47037	n:1020000
KS ci ratio: 7.805383e-02	ci left: 2.370366e-03	ci right 2.563849e-03	k: 2515	n:1020000
SPRR3   1020000 perm   593 sec   (1720 perm/sec)   p_kst 2.465686e-03   p_cons 4.611471e-02   p_joint 1.255882e-03

Joint ci ratio: 1.089466e-01	ci left: 1.186935e-03	ci right 1.324632e-03	k: 1292	n:1030000
Cons ci ratio: 1.757413e-02	ci left: 4.567358e-02	ci right 4.648432e-02	k: 47460	n:1030000
KS ci ratio: 7.774562e-02	ci left: 2.366392e-03	ci right 2.558754e-03	k: 2535	n:1030000
SPRR3   1030000 perm   602 sec   (1710 perm/sec)   p_kst 2.461165e-03   p_cons 4.607767e-02   p_joint 1.254369e-03

Joint ci ratio: 1.087790e-01	ci left: 1.179263e-03	ci right 1.315847e-03	k: 1296	n:1040000
Cons ci ratio: 1.748537e-02	ci left: 4.569584e-02	ci right 4.650284e-02	k: 47942	n:1040000
KS ci ratio: 7.724435e-02	ci left: 2.374754e-03	ci right 2.566495e-03	k: 2568	n:1040000
SPRR3   1040000 perm   612 sec   (1700 perm/sec)   p_kst 2.469231e-03   p_cons 4.609808e-02   p_joint 1.246154e-03

Joint ci ratio: 1.086957e-01	ci left: 1.169885e-03	ci right 1.305272e-03	k: 1298	n:1050000
Cons ci ratio: 1.740662e-02	ci left: 4.567407e-02	ci right 4.647701e-02	k: 48378	n:1050000
KS ci ratio: 7.688607e-02	ci left: 2.374554e-03	ci right 2.565350e-03	k: 2592	n:1050000
SPRR3   1050000 perm   621 sec   (1690 perm/sec)   p_kst 2.468571e-03   p_cons 4.607429e-02   p_joint 1.236190e-03

Joint ci ratio: 1.083628e-01	ci left: 1.166190e-03	ci right 1.300710e-03	k: 1306	n:1060000
Cons ci ratio: 1.732353e-02	ci left: 4.567995e-02	ci right 4.647913e-02	k: 48843	n:1060000
KS ci ratio: 7.665027e-02	ci left: 2.366957e-03	ci right 2.556533e-03	k: 2608	n:1060000
SPRR3   1060000 perm   631 sec   (1680 perm/sec)   p_kst 2.460377e-03   p_cons 4.607830e-02   p_joint 1.232075e-03

Joint ci ratio: 1.077054e-01	ci left: 1.169841e-03	ci right 1.303911e-03	k: 1322	n:1070000
Cons ci ratio: 1.724474e-02	ci left: 4.566992e-02	ci right 4.646525e-02	k: 49291	n:1070000
KS ci ratio: 7.638746e-02	ci left: 2.361336e-03	ci right 2.549785e-03	k: 2626	n:1070000
SPRR3   1070000 perm   641 sec   (1670 perm/sec)   p_kst 2.454206e-03   p_cons 4.606636e-02   p_joint 1.235514e-03

Joint ci ratio: 1.092038e-01	ci left: 1.126578e-03	ci right 1.257602e-03	k: 1286	n:1080000
Cons ci ratio: 1.715508e-02	ci left: 4.572094e-02	ci right 4.651298e-02	k: 49805	n:1080000
KS ci ratio: 7.618509e-02	ci left: 2.352187e-03	ci right 2.539386e-03	k: 2640	n:1080000
SPRR3   1080000 perm   651 sec   (1660 perm/sec)   p_kst 2.444444e-03   p_cons 4.611574e-02   p_joint 1.190741e-03

Joint ci ratio: 1.097177e-01	ci left: 1.105534e-03	ci right 1.234755e-03	k: 1274	n:1090000
Cons ci ratio: 1.707178e-02	ci left: 4.574545e-02	ci right 4.653403e-02	k: 50291	n:1090000
KS ci ratio: 7.582703e-02	ci left: 2.353107e-03	ci right 2.539461e-03	k: 2665	n:1090000
SPRR3   1090000 perm   660 sec   (1651 perm/sec)   p_kst 2.444954e-03   p_cons 4.613853e-02   p_joint 1.168807e-03

Joint ci ratio: 1.092050e-01	ci left: 1.106094e-03	ci right 1.234737e-03	k: 1286	n:1100000
Cons ci ratio: 1.699495e-02	ci left: 4.574236e-02	ci right 4.652730e-02	k: 50747	n:1100000
KS ci ratio: 7.551617e-02	ci left: 2.351337e-03	ci right 2.536753e-03	k: 2687	n:1100000
SPRR3   1100000 perm   671 sec   (1640 perm/sec)   p_kst 2.442727e-03   p_cons 4.613364e-02   p_joint 1.169091e-03

Joint ci ratio: 1.086575e-01	ci left: 1.107522e-03	ci right 1.235644e-03	k: 1299	n:1110000
Cons ci ratio: 1.692331e-02	ci left: 4.571780e-02	ci right 4.649898e-02	k: 51179	n:1110000
KS ci ratio: 7.512578e-02	ci left: 2.354904e-03	ci right 2.539600e-03	k: 2715	n:1110000
SPRR3   1110000 perm   681 sec   (1630 perm/sec)   p_kst 2.445946e-03   p_cons 4.610721e-02   p_joint 1.170270e-03

Joint ci ratio: 1.084079e-01	ci left: 1.102845e-03	ci right 1.230114e-03	k: 1305	n:1120000
Cons ci ratio: 1.684914e-02	ci left: 4.571147e-02	ci right 4.648909e-02	k: 51631	n:1120000
KS ci ratio: 7.486456e-02	ci left: 2.350524e-03	ci right 2.534207e-03	k: 2734	n:1120000
SPRR3   1120000 perm   692 sec   (1618 perm/sec)   p_kst 2.441071e-03   p_cons 4.609911e-02   p_joint 1.165179e-03

Joint ci ratio: 1.079132e-01	ci left: 1.103418e-03	ci right 1.230135e-03	k: 1317	n:1130000
Cons ci ratio: 1.677594e-02	ci left: 4.570526e-02	ci right 4.647937e-02	k: 52083	n:1130000
KS ci ratio: 7.455179e-02	ci left: 2.349696e-03	ci right 2.532515e-03	k: 2757	n:1130000
SPRR3   1130000 perm   702 sec   (1609 perm/sec)   p_kst 2.439823e-03   p_cons 4.609115e-02   p_joint 1.165487e-03

Joint ci ratio: 1.076280e-01	ci left: 1.099713e-03	ci right 1.225650e-03	k: 1324	n:1140000
Cons ci ratio: 1.670302e-02	ci left: 4.570267e-02	ci right 4.647333e-02	k: 52539	n:1140000
KS ci ratio: 7.421617e-02	ci left: 2.350607e-03	ci right 2.532637e-03	k: 2782	n:1140000
SPRR3   1140000 perm   712 sec   (1600 perm/sec)   p_kst 2.440351e-03   p_cons 4.608684e-02   p_joint 1.161404e-03

Joint ci ratio: 1.077100e-01	ci left: 1.088458e-03	ci right 1.213207e-03	k: 1322	n:1150000
Cons ci ratio: 1.662759e-02	ci left: 4.571831e-02	ci right 4.648572e-02	k: 53016	n:1150000
KS ci ratio: 7.385867e-02	ci left: 2.353211e-03	ci right 2.534527e-03	k: 2809	n:1150000
SPRR3   1150000 perm   723 sec   (1591 perm/sec)   p_kst 2.442609e-03   p_cons 4.610087e-02   p_joint 1.149565e-03

Joint ci ratio: 1.081204e-01	ci left: 1.070686e-03	ci right 1.193895e-03	k: 1312	n:1160000
Cons ci ratio: 1.654474e-02	ci left: 4.577834e-02	ci right 4.654289e-02	k: 53545	n:1160000
KS ci ratio: 7.357131e-02	ci left: 2.351540e-03	ci right 2.531993e-03	k: 2831	n:1160000
SPRR3   1160000 perm   733 sec   (1583 perm/sec)   p_kst 2.440517e-03   p_cons 4.615948e-02   p_joint 1.131034e-03

Joint ci ratio: 1.077927e-01	ci left: 1.068188e-03	ci right 1.190713e-03	k: 1320	n:1170000
Cons ci ratio: 1.647590e-02	ci left: 4.576925e-02	ci right 4.653044e-02	k: 53994	n:1170000
KS ci ratio: 7.323584e-02	ci left: 2.353256e-03	ci right 2.532982e-03	k: 2857	n:1170000
SPRR3   1170000 perm   743 sec   (1574 perm/sec)   p_kst 2.441880e-03   p_cons 4.614872e-02   p_joint 1.128205e-03

Joint ci ratio: 1.079159e-01	ci left: 1.056661e-03	ci right 1.178012e-03	k: 1317	n:1180000
Cons ci ratio: 1.640728e-02	ci left: 4.576369e-02	ci right 4.652159e-02	k: 54447	n:1180000
KS ci ratio: 7.299378e-02	ci left: 2.349120e-03	ci right 2.527912e-03	k: 2876	n:1180000
SPRR3   1180000 perm   754 sec   (1565 perm/sec)   p_kst 2.437288e-03   p_cons 4.614153e-02   p_joint 1.116102e-03

Joint ci ratio: 1.087875e-01	ci left: 1.030612e-03	ci right 1.149989e-03	k: 1296	n:1190000
Cons ci ratio: 1.633686e-02	ci left: 4.577246e-02	ci right 4.652723e-02	k: 54917	n:1190000
KS ci ratio: 7.275411e-02	ci left: 2.345055e-03	ci right 2.522927e-03	k: 2895	n:1190000
SPRR3   1190000 perm   764 sec   (1557 perm/sec)   p_kst 2.432773e-03   p_cons 4.614874e-02   p_joint 1.089076e-03

Joint ci ratio: 1.084953e-01	ci left: 1.027699e-03	ci right 1.146397e-03	k: 1303	n:1200000
Cons ci ratio: 1.626488e-02	ci left: 4.579438e-02	ci right 4.654614e-02	k: 55403	n:1200000
KS ci ratio: 7.245451e-02	ci left: 2.345150e-03	ci right 2.522265e-03	k: 2919	n:1200000
SPRR3   1200000 perm   775 sec   (1548 perm/sec)   p_kst 2.432500e-03   p_cons 4.616917e-02   p_joint 1.085833e-03

Joint ci ratio: 1.079995e-01	ci left: 1.028854e-03	ci right 1.147109e-03	k: 1315	n:1210000
Cons ci ratio: 1.619551e-02	ci left: 4.580689e-02	ci right 4.655562e-02	k: 55878	n:1210000
KS ci ratio: 7.215859e-02	ci left: 2.345245e-03	ci right 2.521613e-03	k: 2943	n:1210000
SPRR3   1210000 perm   786 sec   (1540 perm/sec)   p_kst 2.432231e-03   p_cons 4.618017e-02   p_joint 1.086777e-03

Joint ci ratio: 1.073083e-01	ci left: 1.033980e-03	ci right 1.152015e-03	k: 1332	n:1220000
Cons ci ratio: 1.612582e-02	ci left: 4.582573e-02	ci right 4.657151e-02	k: 56361	n:1220000
KS ci ratio: 7.186626e-02	ci left: 2.345339e-03	ci right 2.520971e-03	k: 2967	n:1220000
SPRR3   1220000 perm   796 sec   (1532 perm/sec)   p_kst 2.431967e-03   p_cons 4.619754e-02   p_joint 1.091803e-03

Joint ci ratio: 1.069081e-01	ci left: 1.033486e-03	ci right 1.150997e-03	k: 1342	n:1230000
Cons ci ratio: 1.606131e-02	ci left: 4.582078e-02	ci right 4.656347e-02	k: 56815	n:1230000
KS ci ratio: 7.158945e-02	ci left: 2.344635e-03	ci right 2.519510e-03	k: 2990	n:1230000
SPRR3   1230000 perm   808 sec   (1523 perm/sec)   p_kst 2.430894e-03   p_cons 4.619106e-02   p_joint 1.091057e-03

Joint ci ratio: 1.064730e-01	ci left: 1.033786e-03	ci right 1.150823e-03	k: 1353	n:1240000
Cons ci ratio: 1.599538e-02	ci left: 4.582797e-02	ci right 4.656770e-02	k: 57284	n:1240000
KS ci ratio: 7.135142e-02	ci left: 2.341567e-03	ci right 2.515608e-03	k: 3010	n:1240000
SPRR3   1240000 perm   819 sec   (1515 perm/sec)   p_kst 2.427419e-03   p_cons 4.619677e-02   p_joint 1.091129e-03

Joint ci ratio: 1.066708e-01	ci left: 1.021622e-03	ci right 1.137510e-03	k: 1348	n:1250000
Cons ci ratio: 1.592867e-02	ci left: 4.584381e-02	ci right 4.658069e-02	k: 57764	n:1250000
KS ci ratio: 7.112751e-02	ci left: 2.337764e-03	ci right 2.510954e-03	k: 3029	n:1250000
SPRR3   1250000 perm   830 sec   (1506 perm/sec)   p_kst 2.423200e-03   p_cons 4.621120e-02   p_joint 1.078400e-03

Joint ci ratio: 1.062385e-01	ci left: 1.022011e-03	ci right 1.137445e-03	k: 1359	n:1260000
Cons ci ratio: 1.587164e-02	ci left: 4.581039e-02	ci right 4.654407e-02	k: 58182	n:1260000
KS ci ratio: 7.084748e-02	ci left: 2.337920e-03	ci right 2.510412e-03	k: 3053	n:1260000
SPRR3   1260000 perm   841 sec   (1498 perm/sec)   p_kst 2.423016e-03   p_cons 4.617619e-02   p_joint 1.078571e-03

Joint ci ratio: 1.068304e-01	ci left: 1.002467e-03	ci right 1.116363e-03	k: 1344	n:1270000
Cons ci ratio: 1.580900e-02	ci left: 4.581202e-02	ci right 4.654281e-02	k: 58644	n:1270000
KS ci ratio: 7.054777e-02	ci left: 2.339622e-03	ci right 2.511479e-03	k: 3079	n:1270000
SPRR3   1270000 perm   855 sec   (1486 perm/sec)   p_kst 2.424409e-03   p_cons 4.617638e-02   p_joint 1.058268e-03

Joint ci ratio: 1.083328e-01	ci left: 9.665060e-04	ci right 1.077959e-03	k: 1307	n:1280000
Cons ci ratio: 1.575044e-02	ci left: 4.579495e-02	ci right 4.652273e-02	k: 59082	n:1280000
KS ci ratio: 7.034269e-02	ci left: 2.335158e-03	ci right 2.506169e-03	k: 3097	n:1280000
SPRR3   1280000 perm   868 sec   (1475 perm/sec)   p_kst 2.419531e-03   p_cons 4.615781e-02   p_joint 1.021094e-03

Joint ci ratio: 1.081266e-01	ci left: 9.627846e-04	ci right 1.073584e-03	k: 1312	n:1290000
Cons ci ratio: 1.568784e-02	ci left: 4.580440e-02	ci right 4.652942e-02	k: 59554	n:1290000
KS ci ratio: 7.011684e-02	ci left: 2.332287e-03	ci right 2.502517e-03	k: 3117	n:1290000
SPRR3   1290000 perm   879 sec   (1467 perm/sec)   p_kst 2.416279e-03   p_cons 4.616589e-02   p_joint 1.017054e-03

Joint ci ratio: 1.077172e-01	ci left: 9.628633e-04	ci right 1.073225e-03	k: 1322	n:1300000
Cons ci ratio: 1.562202e-02	ci left: 4.583595e-02	ci right 4.655839e-02	k: 60055	n:1300000
KS ci ratio: 6.991549e-02	ci left: 2.327950e-03	ci right 2.497356e-03	k: 3135	n:1300000
SPRR3   1300000 perm   891 sec   (1460 perm/sec)   p_kst 2.411538e-03   p_cons 4.619615e-02   p_joint 1.016923e-03

Joint ci ratio: 9.641365e-02	ci left: 1.199530e-03	ci right 1.321776e-03	k: 1650	n:1310000
Cons ci ratio: 1.556389e-02	ci left: 4.582822e-02	ci right 4.654783e-02	k: 60505	n:1310000
KS ci ratio: 6.963844e-02	ci left: 2.328931e-03	ci right 2.497709e-03	k: 3160	n:1310000
SPRR3   1310000 perm   903 sec   (1451 perm/sec)   p_kst 2.412214e-03   p_cons 4.618702e-02   p_joint 1.259542e-03

Outputting figure to mutsig2_images.part000000000166/SPRR3.7_514_1310000_0.0024122_0.046187_0.0012595.png
                gene_name: SPRR3
               theta_stop: 0.096 
                    nperm: 1310000 
                     p_ks: 0.0024 
        ci_ks_bounds_left: 0.0023 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.0013 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0013 

Current progress: 20 percent done.
SR140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
Cons ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
KS ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
SR140   10000 perm   2 sec   (4986 perm/sec)   p_kst 6.508000e-01   p_cons 5.115000e-01   p_joint 7.567000e-01

Outputting figure to mutsig2_images.part000000000166/SR140.7_3202_10000_0.6508_0.5115_0.7567.png
                gene_name: SR140
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 22 percent done.
SRBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
SRBD1   10000 perm   2 sec   (5267 perm/sec)   p_kst 7.986000e-01   p_cons 7.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRBD1.7_3068_10000_0.7986_0.7686_1.png
                gene_name: SRBD1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
SPON1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.586443e-02	ci left: 8.523304e-01	ci right 8.660597e-01	k: 8593	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
SPON1   10000 perm   2 sec   (5388 perm/sec)   p_kst 6.366000e-01   p_cons 4.266000e-01   p_joint 8.593000e-01

Outputting figure to mutsig2_images.part000000000166/SPON1.6_2487_10000_0.6366_0.4266_0.8593.png
                gene_name: SPON1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 25 percent done.
SPTBN5
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
Cons ci ratio: 2.016252e-02	ci left: 7.826940e-01	ci right 7.987363e-01	k: 7908	n:10000
KS ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
SPTBN5   10000 perm   3 sec   (3389 perm/sec)   p_kst 5.585000e-01   p_cons 7.908000e-01   p_joint 6.976000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN5.6_11188_10000_0.5585_0.7908_0.6976.png
                gene_name: SPTBN5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 27 percent done.
SQRDL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
SQRDL   10000 perm   2 sec   (5706 perm/sec)   p_kst 6.140000e-02   p_cons 3.078000e-01   p_joint 8.520000e-02

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 4.273716e-02	ci left: 2.897282e-01	ci right 3.024312e-01	k: 5921	n:20000
KS ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
SQRDL   20000 perm   4 sec   (5110 perm/sec)   p_kst 6.275000e-02   p_cons 2.960500e-01   p_joint 8.795000e-02

Joint ci ratio: 6.379028e-02	ci left: 1.082223e-01	ci right 1.153864e-01	k: 3353	n:30000
Cons ci ratio: 3.499270e-02	ci left: 2.897434e-01	ci right 3.000964e-01	k: 8847	n:30000
KS ci ratio: 8.735481e-02	ci left: 6.014581e-02	ci right 6.567254e-02	k: 1886	n:30000
SQRDL   30000 perm   6 sec   (4878 perm/sec)   p_kst 6.286667e-02   p_cons 2.949000e-01   p_joint 1.117667e-01

Outputting figure to mutsig2_images.part000000000166/SQRDL.6_1389_30000_0.062867_0.2949_0.11177.png
                gene_name: SQRDL
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 28 percent done.
SPNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
Cons ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
KS ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
SPNS3   10000 perm   2 sec   (5692 perm/sec)   p_kst 5.408000e-01   p_cons 9.121000e-01   p_joint 6.658000e-01

Outputting figure to mutsig2_images.part000000000166/SPNS3.5_1587_10000_0.5408_0.9121_0.6658.png
                gene_name: SPNS3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 30 percent done.
SPOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
Cons ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
KS ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
SPOCK3   10000 perm   2 sec   (5527 perm/sec)   p_kst 1.590000e-01   p_cons 5.936000e-01   p_joint 3.090000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCK3.5_1355_10000_0.159_0.5936_0.309.png
                gene_name: SPOCK3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 32 percent done.
SPRY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
Cons ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
SPRY3   10000 perm   2 sec   (6117 perm/sec)   p_kst 8.155000e-01   p_cons 3.789000e-01   p_joint 6.393000e-01

Outputting figure to mutsig2_images.part000000000166/SPRY3.5_871_10000_0.8155_0.3789_0.6393.png
                gene_name: SPRY3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 33 percent done.
SPTY2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 1.300507e-03	ci left: 9.981617e-01	ci right 9.995204e-01	k: 9990	n:10000
KS ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
SPTY2D1   10000 perm   2 sec   (5384 perm/sec)   p_kst 3.948000e-01   p_cons 9.990000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000166/SPTY2D1.5_2082_10000_0.3948_0.999_0.6035.png
                gene_name: SPTY2D1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
SPZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
KS ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
SPZ1   10000 perm   2 sec   (5961 perm/sec)   p_kst 9.404000e-01   p_cons 7.278000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPZ1.5_1297_10000_0.9404_0.7278_1.png
                gene_name: SPZ1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
SPOCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
SPOCD1   10000 perm   2 sec   (5744 perm/sec)   p_kst 3.079000e-01   p_cons 1.700000e-02   p_joint 9.450000e-02

Joint ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
Cons ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
KS ci ratio: 4.075714e-02	ci left: 3.097578e-01	ci right 3.226957e-01	k: 6324	n:20000
SPOCD1   20000 perm   4 sec   (5169 perm/sec)   p_kst 3.162000e-01   p_cons 1.645000e-02   p_joint 3.830000e-02

Joint ci ratio: 1.080879e-01	ci left: 3.972548e-02	ci right 4.429709e-02	k: 1259	n:30000
Cons ci ratio: 1.758150e-01	ci left: 1.486554e-02	ci right 1.776256e-02	k: 488	n:30000
KS ci ratio: 3.338482e-02	ci left: 3.095792e-01	ci right 3.201234e-01	k: 9445	n:30000
SPOCD1   30000 perm   6 sec   (4947 perm/sec)   p_kst 3.148333e-01   p_cons 1.626667e-02   p_joint 4.196667e-02

Joint ci ratio: 1.113057e-01	ci left: 2.839861e-02	ci right 3.177007e-02	k: 1202	n:40000
Cons ci ratio: 1.548151e-01	ci left: 1.455261e-02	ci right 1.701842e-02	k: 630	n:40000
KS ci ratio: 2.893335e-02	ci left: 3.099758e-01	ci right 3.191012e-01	k: 12581	n:40000
SPOCD1   40000 perm   8 sec   (4789 perm/sec)   p_kst 3.145250e-01   p_cons 1.575000e-02   p_joint 3.005000e-02

Joint ci ratio: 8.842284e-02	ci left: 3.614524e-02	ci right 3.950869e-02	k: 1890	n:50000
Cons ci ratio: 1.391675e-01	ci left: 1.453199e-02	ci right 1.672477e-02	k: 780	n:50000
KS ci ratio: 2.586258e-02	ci left: 3.107300e-01	ci right 3.188916e-01	k: 15740	n:50000
SPOCD1   50000 perm   11 sec   (4664 perm/sec)   p_kst 3.148000e-01   p_cons 1.560000e-02   p_joint 3.780000e-02

Joint ci ratio: 7.023829e-02	ci left: 4.761400e-02	ci right 5.109642e-02	k: 2960	n:60000
Cons ci ratio: 1.266446e-01	ci left: 1.472046e-02	ci right 1.672678e-02	k: 942	n:60000
KS ci ratio: 2.360209e-02	ci left: 3.112174e-01	ci right 3.186672e-01	k: 18896	n:60000
SPOCD1   60000 perm   13 sec   (4561 perm/sec)   p_kst 3.149333e-01   p_cons 1.570000e-02   p_joint 4.933333e-02

Joint ci ratio: 7.202297e-02	ci left: 3.913584e-02	ci right 4.207383e-02	k: 2841	n:70000
Cons ci ratio: 1.178045e-01	ci left: 1.465335e-02	ci right 1.650140e-02	k: 1089	n:70000
KS ci ratio: 2.184948e-02	ci left: 3.115310e-01	ci right 3.184272e-01	k: 22048	n:70000
SPOCD1   70000 perm   16 sec   (4469 perm/sec)   p_kst 3.149714e-01   p_cons 1.555714e-02   p_joint 4.058571e-02

Joint ci ratio: 5.315678e-02	ci left: 6.195556e-02	ci right 6.535117e-02	k: 5091	n:80000
Cons ci ratio: 1.044158e-01	ci left: 1.640777e-02	ci right 1.822748e-02	k: 1384	n:80000
KS ci ratio: 2.042818e-02	ci left: 3.119686e-01	ci right 3.184198e-01	k: 25215	n:80000
SPOCD1   80000 perm   18 sec   (4386 perm/sec)   p_kst 3.151875e-01   p_cons 1.730000e-02   p_joint 6.363750e-02

Joint ci ratio: 5.212074e-02	ci left: 5.759001e-02	ci right 6.068292e-02	k: 5321	n:90000
Cons ci ratio: 9.860940e-02	ci left: 1.640398e-02	ci right 1.811623e-02	k: 1552	n:90000
KS ci ratio: 1.929264e-02	ci left: 3.114227e-01	ci right 3.175004e-01	k: 28301	n:90000
SPOCD1   90000 perm   21 sec   (4302 perm/sec)   p_kst 3.144556e-01   p_cons 1.724444e-02   p_joint 5.912222e-02

Outputting figure to mutsig2_images.part000000000166/SPOCD1.4_3711_90000_0.31446_0.017244_0.059122.png
                gene_name: SPOCD1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 38 percent done.
SPOPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
KS ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
SPOPL   10000 perm   2 sec   (6134 perm/sec)   p_kst 2.563000e-01   p_cons 3.766000e-01   p_joint 2.774000e-01

Outputting figure to mutsig2_images.part000000000166/SPOPL.4_1219_10000_0.2563_0.3766_0.2774.png
                gene_name: SPOPL
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 40 percent done.
SPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
SPP2   10000 perm   1 sec   (6847 perm/sec)   p_kst 4.346000e-01   p_cons 9.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPP2.4_664_10000_0.4346_0.9051_1.png
                gene_name: SPP2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
SPPL2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
SPPL2A   10000 perm   2 sec   (6074 perm/sec)   p_kst 7.173000e-01   p_cons 9.223000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPPL2A.4_1623_10000_0.7173_0.9223_1.png
                gene_name: SPPL2A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
SPRR2E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
SPRR2E   10000 perm   2 sec   (6514 perm/sec)   p_kst 9.157000e-01   p_cons 5.085000e-01   p_joint 8.020000e-01

Outputting figure to mutsig2_images.part000000000166/SPRR2E.4_223_10000_0.9157_0.5085_0.802.png
                gene_name: SPRR2E
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 45 percent done.
SQSTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
Cons ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
SQSTM1   10000 perm   2 sec   (5844 perm/sec)   p_kst 2.176000e-01   p_cons 9.930000e-02   p_joint 1.541000e-01

Joint ci ratio: 9.794374e-02	ci left: 7.050696e-02	ci right 7.781743e-02	k: 1482	n:20000
Cons ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
KS ci ratio: 5.235965e-02	ci left: 2.131359e-01	ci right 2.246459e-01	k: 4377	n:20000
SQSTM1   20000 perm   4 sec   (5269 perm/sec)   p_kst 2.188500e-01   p_cons 9.375000e-02   p_joint 7.410000e-02

Outputting figure to mutsig2_images.part000000000166/SQSTM1.4_1355_20000_0.21885_0.09375_0.0741.png
                gene_name: SQSTM1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 47 percent done.
SRGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
KS ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
SRGAP2   10000 perm   2 sec   (5292 perm/sec)   p_kst 3.691000e-01   p_cons 3.416000e-01   p_joint 5.213000e-01

Outputting figure to mutsig2_images.part000000000166/SRGAP2.4_3040_10000_0.3691_0.3416_0.5213.png
                gene_name: SRGAP2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
SRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.713205e-02	ci left: 3.991423e-01	ci right 4.185108e-01	k: 4088	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
SRL   10000 perm   2 sec   (6061 perm/sec)   p_kst 3.723000e-01   p_cons 5.159000e-01   p_joint 4.088000e-01

Outputting figure to mutsig2_images.part000000000166/SRL.4_1446_10000_0.3723_0.5159_0.4088.png
                gene_name: SRL
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 50 percent done.
SRMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
Cons ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SRMS   10000 perm   2 sec   (6060 perm/sec)   p_kst 1   p_cons 3.079000e-01   p_joint 7.324000e-01

Outputting figure to mutsig2_images.part000000000166/SRMS.4_1499_10000_1_0.3079_0.7324.png
                gene_name: SRMS
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 52 percent done.
SRPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
KS ci ratio: 1.879503e-02	ci left: 8.053187e-01	ci right 8.206985e-01	k: 8131	n:10000
SRPK2   10000 perm   2 sec   (5794 perm/sec)   p_kst 8.131000e-01   p_cons 7.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRPK2.4_2206_10000_0.8131_0.7714_1.png
                gene_name: SRPK2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SRPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
SRPR   10000 perm   2 sec   (5958 perm/sec)   p_kst 9.035000e-01   p_cons 3.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRPR.4_1973_10000_0.9035_0.326_1.png
                gene_name: SRPR
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
SPOCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
Cons ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
KS ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
SPOCK1   10000 perm   2 sec   (6165 perm/sec)   p_kst 6.127000e-01   p_cons 1.947000e-01   p_joint 4.908000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCK1.3_1360_10000_0.6127_0.1947_0.4908.png
                gene_name: SPOCK1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
SPRY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KS ci ratio: 1.745870e-02	ci left: 8.270690e-01	ci right 8.417356e-01	k: 8345	n:10000
SPRY4   10000 perm   2 sec   (6487 perm/sec)   p_kst 8.345000e-01   p_cons 8.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPRY4.3_977_10000_0.8345_0.8441_1.png
                gene_name: SPRY4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SPRYD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
SPRYD3   10000 perm   2 sec   (6292 perm/sec)   p_kst 4.855000e-01   p_cons 6.290000e-02   p_joint 3.015000e-01

Joint ci ratio: 4.115152e-02	ci left: 3.056314e-01	ci right 3.185233e-01	k: 6241	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 2.880195e-02	ci left: 4.738538e-01	ci right 4.877518e-01	k: 9616	n:20000
SPRYD3   20000 perm   4 sec   (5586 perm/sec)   p_kst 4.808000e-01   p_cons 6.230000e-02   p_joint 3.120500e-01

Joint ci ratio: 2.859444e-02	ci left: 3.796214e-01	ci right 3.906675e-01	k: 11554	n:30000
Cons ci ratio: 8.638190e-02	ci left: 6.145202e-02	ci right 6.703274e-02	k: 1926	n:30000
KS ci ratio: 2.349378e-02	ci left: 4.756314e-01	ci right 4.869722e-01	k: 14439	n:30000
SPRYD3   30000 perm   6 sec   (5310 perm/sec)   p_kst 4.813000e-01   p_cons 6.420000e-02   p_joint 3.851333e-01

Outputting figure to mutsig2_images.part000000000166/SPRYD3.3_1373_30000_0.4813_0.0642_0.38513.png
                gene_name: SPRYD3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
SRD5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
KS ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
SRD5A1   10000 perm   1 sec   (6763 perm/sec)   p_kst 6.200000e-03   p_cons 5.080000e-02   p_joint 3.970000e-02

Joint ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
Cons ci ratio: 1.193816e-01	ci left: 4.808865e-02	ci right 5.424267e-02	k: 1022	n:20000
KS ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
SRD5A1   20000 perm   3 sec   (5954 perm/sec)   p_kst 5.450000e-03   p_cons 5.110000e-02   p_joint 1.950000e-03

Joint ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
Cons ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
KS ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
SRD5A1   30000 perm   5 sec   (5608 perm/sec)   p_kst 5.733333e-03   p_cons 5.096667e-02   p_joint 1.033333e-03

Joint ci ratio: 3.307161e-01	ci left: 2.922113e-03	ci right 4.101780e-03	k: 139	n:40000
Cons ci ratio: 8.366497e-02	ci left: 4.984426e-02	ci right 5.422106e-02	k: 2080	n:40000
KS ci ratio: 2.549572e-01	ci left: 5.126208e-03	ci right 6.646872e-03	k: 234	n:40000
SRD5A1   40000 perm   7 sec   (5378 perm/sec)   p_kst 5.850000e-03   p_cons 5.200000e-02   p_joint 3.475000e-03

Joint ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
Cons ci ratio: 7.405848e-02	ci left: 5.109159e-02	ci right 5.504050e-02	k: 2652	n:50000
KS ci ratio: 2.252617e-01	ci left: 5.341897e-03	ci right 6.716405e-03	k: 300	n:50000
SRD5A1   50000 perm   10 sec   (5218 perm/sec)   p_kst 6.000000e-03   p_cons 5.304000e-02   p_joint 2.420000e-03

Joint ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
Cons ci ratio: 6.772508e-02	ci left: 5.108952e-02	ci right 5.468722e-02	k: 3172	n:60000
KS ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
SRD5A1   60000 perm   12 sec   (5084 perm/sec)   p_kst 5.833333e-03   p_cons 5.286667e-02   p_joint 3.650000e-03

Joint ci ratio: 2.644725e-01	ci left: 2.715094e-03	ci right 3.555500e-03	k: 218	n:70000
Cons ci ratio: 6.281636e-02	ci left: 5.104216e-02	ci right 5.436647e-02	k: 3688	n:70000
KS ci ratio: 1.942207e-01	ci left: 5.223695e-03	ci right 6.360716e-03	k: 404	n:70000
SRD5A1   70000 perm   14 sec   (4971 perm/sec)   p_kst 5.771429e-03   p_cons 5.268571e-02   p_joint 3.114286e-03

Joint ci ratio: 2.510843e-01	ci left: 2.656324e-03	ci right 3.430411e-03	k: 242	n:80000
Cons ci ratio: 5.883306e-02	ci left: 5.102612e-02	ci right 5.413143e-02	k: 4205	n:80000
KS ci ratio: 1.832480e-01	ci left: 5.166207e-03	ci right 6.220127e-03	k: 454	n:80000
SRD5A1   80000 perm   16 sec   (4853 perm/sec)   p_kst 5.675000e-03   p_cons 5.256250e-02   p_joint 3.025000e-03

Joint ci ratio: 2.248175e-01	ci left: 2.988270e-03	ci right 3.755402e-03	k: 302	n:90000
Cons ci ratio: 5.530050e-02	ci left: 5.141362e-02	ci right 5.434862e-02	k: 4758	n:90000
KS ci ratio: 1.704190e-01	ci left: 5.346234e-03	ci right 6.352684e-03	k: 525	n:90000
SRD5A1   90000 perm   19 sec   (4755 perm/sec)   p_kst 5.833333e-03   p_cons 5.286667e-02   p_joint 3.355556e-03

Joint ci ratio: 2.191264e-01	ci left: 2.840523e-03	ci right 3.548778e-03	k: 318	n:100000
Cons ci ratio: 5.250872e-02	ci left: 5.140216e-02	ci right 5.418385e-02	k: 5278	n:100000
KS ci ratio: 1.691806e-01	ci left: 4.888111e-03	ci right 5.800941e-03	k: 533	n:100000
SRD5A1   100000 perm   21 sec   (4679 perm/sec)   p_kst 5.330000e-03   p_cons 5.278000e-02   p_joint 3.180000e-03

Joint ci ratio: 2.083046e-01	ci left: 2.874855e-03	ci right 3.551757e-03	k: 352	n:110000
Cons ci ratio: 5.012849e-02	ci left: 5.134196e-02	ci right 5.399078e-02	k: 5792	n:110000
KS ci ratio: 1.616398e-01	ci left: 4.888187e-03	ci right 5.756390e-03	k: 584	n:110000
SRD5A1   110000 perm   24 sec   (4607 perm/sec)   p_kst 5.309091e-03   p_cons 5.265455e-02   p_joint 3.200000e-03

Joint ci ratio: 2.034758e-01	ci left: 2.769631e-03	ci right 3.404760e-03	k: 369	n:120000
Cons ci ratio: 4.791296e-02	ci left: 5.156606e-02	ci right 5.410560e-02	k: 6339	n:120000
KS ci ratio: 1.542950e-01	ci left: 4.937078e-03	ci right 5.770435e-03	k: 641	n:120000
SRD5A1   120000 perm   26 sec   (4534 perm/sec)   p_kst 5.341667e-03   p_cons 5.282500e-02   p_joint 3.075000e-03

Joint ci ratio: 2.000066e-01	ci left: 2.651514e-03	ci right 3.247923e-03	k: 382	n:130000
Cons ci ratio: 4.605927e-02	ci left: 5.156004e-02	ci right 5.399842e-02	k: 6860	n:130000
KS ci ratio: 1.471294e-01	ci left: 5.031070e-03	ci right 5.837386e-03	k: 705	n:130000
SRD5A1   130000 perm   29 sec   (4462 perm/sec)   p_kst 5.423077e-03   p_cons 5.276923e-02   p_joint 2.938462e-03

Joint ci ratio: 1.229613e-01	ci left: 6.763784e-03	ci right 7.656809e-03	k: 1008	n:140000
Cons ci ratio: 4.458732e-02	ci left: 5.115365e-02	ci right 5.349350e-02	k: 7324	n:140000
KS ci ratio: 1.403288e-01	ci left: 5.153756e-03	ci right 5.938365e-03	k: 775	n:140000
SRD5A1   140000 perm   32 sec   (4388 perm/sec)   p_kst 5.535714e-03   p_cons 5.231429e-02   p_joint 7.200000e-03

Joint ci ratio: 1.456367e-01	ci left: 4.456501e-03	ci right 5.162850e-03	k: 720	n:150000
Cons ci ratio: 4.292622e-02	ci left: 5.153502e-02	ci right 5.380231e-02	k: 7899	n:150000
KS ci ratio: 1.361006e-01	ci left: 5.125539e-03	ci right 5.880435e-03	k: 824	n:150000
SRD5A1   150000 perm   35 sec   (4277 perm/sec)   p_kst 5.493333e-03   p_cons 5.266000e-02   p_joint 4.800000e-03

Joint ci ratio: 1.537987e-01	ci left: 3.732673e-03	ci right 4.360508e-03	k: 646	n:160000
Cons ci ratio: 4.149993e-02	ci left: 5.172158e-02	ci right 5.391966e-02	k: 8450	n:160000
KS ci ratio: 1.318542e-01	ci left: 5.131383e-03	ci right 5.861712e-03	k: 878	n:160000
SRD5A1   160000 perm   38 sec   (4201 perm/sec)   p_kst 5.487500e-03   p_cons 5.281250e-02   p_joint 4.037500e-03

Joint ci ratio: 1.551466e-01	ci left: 3.450860e-03	ci right 4.036852e-03	k: 635	n:170000
Cons ci ratio: 4.027077e-02	ci left: 5.172997e-02	ci right 5.386178e-02	k: 8974	n:170000
KS ci ratio: 1.281894e-01	ci left: 5.119777e-03	ci right 5.826660e-03	k: 929	n:170000
SRD5A1   170000 perm   41 sec   (4137 perm/sec)   p_kst 5.464706e-03   p_cons 5.278824e-02   p_joint 3.735294e-03

Joint ci ratio: 1.307781e-01	ci left: 4.641748e-03	ci right 5.296574e-03	k: 893	n:180000
Cons ci ratio: 3.922107e-02	ci left: 5.154565e-02	ci right 5.361324e-02	k: 9463	n:180000
KS ci ratio: 1.239907e-01	ci left: 5.179697e-03	ci right 5.869709e-03	k: 993	n:180000
SRD5A1   180000 perm   44 sec   (4076 perm/sec)   p_kst 5.516667e-03   p_cons 5.257222e-02   p_joint 4.961111e-03

Joint ci ratio: 1.270647e-01	ci left: 4.667401e-03	ci right 5.305741e-03	k: 946	n:190000
Cons ci ratio: 3.814432e-02	ci left: 5.165259e-02	ci right 5.366635e-02	k: 10004	n:190000
KS ci ratio: 1.202937e-01	ci left: 5.223435e-03	ci right 5.897049e-03	k: 1055	n:190000
SRD5A1   190000 perm   47 sec   (4021 perm/sec)   p_kst 5.552632e-03   p_cons 5.265263e-02   p_joint 4.978947e-03

Joint ci ratio: 1.245298e-01	ci left: 4.622887e-03	ci right 5.241596e-03	k: 985	n:200000
Cons ci ratio: 3.711266e-02	ci left: 5.185362e-02	ci right 5.381936e-02	k: 10566	n:200000
KS ci ratio: 1.179206e-01	ci left: 5.170849e-03	ci right 5.823609e-03	k: 1098	n:200000
SRD5A1   200000 perm   50 sec   (3967 perm/sec)   p_kst 5.490000e-03   p_cons 5.283000e-02   p_joint 4.925000e-03

Joint ci ratio: 1.012261e-01	ci left: 6.731405e-03	ci right 7.453730e-03	k: 1488	n:210000
Cons ci ratio: 3.626201e-02	ci left: 5.175762e-02	ci right 5.367380e-02	k: 11069	n:210000
KS ci ratio: 1.151264e-01	ci left: 5.174267e-03	ci right 5.810929e-03	k: 1152	n:210000
SRD5A1   210000 perm   54 sec   (3908 perm/sec)   p_kst 5.485714e-03   p_cons 5.270952e-02   p_joint 7.085714e-03

Joint ci ratio: 1.123815e-01	ci left: 5.190795e-03	ci right 5.813252e-03	k: 1209	n:220000
Cons ci ratio: 3.540436e-02	ci left: 5.184660e-02	ci right 5.371975e-02	k: 11611	n:220000
KS ci ratio: 1.124282e-01	ci left: 5.186376e-03	ci right 5.808580e-03	k: 1208	n:220000
SRD5A1   220000 perm   57 sec   (3853 perm/sec)   p_kst 5.490909e-03   p_cons 5.277727e-02   p_joint 5.495455e-03

Joint ci ratio: 9.195563e-02	ci left: 7.478501e-03	ci right 8.203550e-03	k: 1802	n:230000
Cons ci ratio: 3.455681e-02	ci left: 5.206632e-02	ci right 5.390149e-02	k: 12185	n:230000
KS ci ratio: 1.102183e-01	ci left: 5.167990e-03	ci right 5.775010e-03	k: 1257	n:230000
SRD5A1   230000 perm   60 sec   (3803 perm/sec)   p_kst 5.465217e-03   p_cons 5.297826e-02   p_joint 7.834783e-03

Joint ci ratio: 9.573403e-02	ci left: 6.605243e-03	ci right 7.273415e-03	k: 1664	n:240000
Cons ci ratio: 3.380792e-02	ci left: 5.214835e-02	ci right 5.394580e-02	k: 12730	n:240000
KS ci ratio: 1.079678e-01	ci left: 5.167465e-03	ci right 5.761241e-03	k: 1310	n:240000
SRD5A1   240000 perm   64 sec   (3745 perm/sec)   p_kst 5.458333e-03   p_cons 5.304167e-02   p_joint 6.933333e-03

Joint ci ratio: 1.109540e-01	ci left: 4.692257e-03	ci right 5.247315e-03	k: 1241	n:250000
Cons ci ratio: 3.312679e-02	ci left: 5.216071e-02	ci right 5.392167e-02	k: 13259	n:250000
KS ci ratio: 1.057329e-01	ci left: 5.178781e-03	ci right 5.760774e-03	k: 1366	n:250000
SRD5A1   250000 perm   68 sec   (3688 perm/sec)   p_kst 5.464000e-03   p_cons 5.303600e-02   p_joint 4.964000e-03

Joint ci ratio: 1.127575e-01	ci left: 4.365941e-03	ci right 4.891350e-03	k: 1202	n:260000
Cons ci ratio: 3.245666e-02	ci left: 5.226024e-02	ci right 5.398820e-02	k: 13811	n:260000
KS ci ratio: 1.037046e-01	ci left: 5.181850e-03	ci right 5.752336e-03	k: 1420	n:260000
SRD5A1   260000 perm   71 sec   (3639 perm/sec)   p_kst 5.461538e-03   p_cons 5.311923e-02   p_joint 4.623077e-03

Joint ci ratio: 1.140114e-01	ci left: 4.110643e-03	ci right 4.611199e-03	k: 1176	n:270000
Cons ci ratio: 3.186899e-02	ci left: 5.221672e-02	ci right 5.391141e-02	k: 14326	n:270000
KS ci ratio: 1.016848e-01	ci left: 5.195621e-03	ci right 5.755816e-03	k: 1477	n:270000
SRD5A1   270000 perm   75 sec   (3590 perm/sec)   p_kst 5.470370e-03   p_cons 5.305926e-02   p_joint 4.355556e-03

Joint ci ratio: 9.512311e-02	ci left: 5.741698e-03	ci right 6.318599e-03	k: 1687	n:280000
Cons ci ratio: 3.131324e-02	ci left: 5.217303e-02	ci right 5.383624e-02	k: 14840	n:280000
KS ci ratio: 9.977860e-02	ci left: 5.208507e-03	ci right 5.758947e-03	k: 1534	n:280000
SRD5A1   280000 perm   79 sec   (3546 perm/sec)   p_kst 5.478571e-03   p_cons 5.300000e-02   p_joint 6.025000e-03

Outputting figure to mutsig2_images.part000000000166/SRD5A1.3_800_280000_0.0054786_0.053_0.006025.png
                gene_name: SRD5A1
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.0060 
     ci_joint_bounds_left: 0.0057 
    ci_joint_bounds_right: 0.0063 

Current progress: 62 percent done.
SRD5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
SRD5A2   10000 perm   2 sec   (6500 perm/sec)   p_kst 9.820000e-01   p_cons 8.433000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRD5A2.3_784_10000_0.982_0.8433_1.png
                gene_name: SRD5A2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SRD5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.719645e-02	ci left: 2.452932e-01	ci right 2.624504e-01	k: 2538	n:10000
Cons ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
KS ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
SRD5A3   10000 perm   1 sec   (7033 perm/sec)   p_kst 1.122000e-01   p_cons 5.399000e-01   p_joint 2.538000e-01

Joint ci ratio: 5.627305e-02	ci left: 1.897265e-01	ci right 2.007622e-01	k: 3904	n:20000
Cons ci ratio: 2.578026e-02	ci left: 5.292088e-01	ci right 5.430807e-01	k: 10723	n:20000
KS ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
SRD5A3   20000 perm   3 sec   (6171 perm/sec)   p_kst 1.150500e-01   p_cons 5.361500e-01   p_joint 1.952000e-01

Outputting figure to mutsig2_images.part000000000166/SRD5A3.3_977_20000_0.11505_0.53615_0.1952.png
                gene_name: SRD5A3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 65 percent done.
SRPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
KS ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
SRPK1   10000 perm   2 sec   (5973 perm/sec)   p_kst 7.097000e-01   p_cons 8.980000e-02   p_joint 3.395000e-01

Joint ci ratio: 3.327542e-02	ci left: 4.027732e-01	ci right 4.164531e-01	k: 8192	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.770166e-02	ci left: 7.039580e-01	ci right 7.165808e-01	k: 14206	n:20000
SRPK1   20000 perm   4 sec   (5321 perm/sec)   p_kst 7.103000e-01   p_cons 9.850000e-02   p_joint 4.096000e-01

Outputting figure to mutsig2_images.part000000000166/SRPK1.3_2032_20000_0.7103_0.0985_0.4096.png
                gene_name: SRPK1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 67 percent done.
SPNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
KS ci ratio: 4.517048e-02	ci left: 4.197698e-01	ci right 4.392713e-01	k: 4295	n:10000
SPNS1   10000 perm   2 sec   (6321 perm/sec)   p_kst 4.295000e-01   p_cons 1.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPNS1.2_1635_10000_0.4295_0.1819_1.png
                gene_name: SPNS1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
SPON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
KS ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
SPON2   10000 perm   1 sec   (6679 perm/sec)   p_kst 7.531000e-01   p_cons 9.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPON2.2_1016_10000_0.7531_0.9756_1.png
                gene_name: SPON2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
SPPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
KS ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
SPPL3   10000 perm   2 sec   (6649 perm/sec)   p_kst 4.518000e-01   p_cons 4.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPPL3.2_1199_10000_0.4518_0.412_1.png
                gene_name: SPPL3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SPRED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
Cons ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
SPRED2   10000 perm   2 sec   (5477 perm/sec)   p_kst 8.820000e-02   p_cons 9.674000e-01   p_joint 7.505000e-01

Joint ci ratio: 7.313465e-03	ci left: 9.314435e-01	ci right 9.383294e-01	k: 18699	n:20000
Cons ci ratio: 4.861484e-03	ci left: 9.677490e-01	ci right 9.725130e-01	k: 19404	n:20000
KS ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
SPRED2   20000 perm   4 sec   (5341 perm/sec)   p_kst 8.925000e-02   p_cons 9.702000e-01   p_joint 9.349500e-01

Outputting figure to mutsig2_images.part000000000166/SPRED2.2_1302_20000_0.08925_0.9702_0.93495.png
                gene_name: SPRED2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 73 percent done.
SPRR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.527085e-03	ci left: 9.396240e-01	ci right 9.487151e-01	k: 9443	n:10000
KS ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
SPRR1B   10000 perm   1 sec   (7005 perm/sec)   p_kst 8.464000e-01   p_cons 9.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPRR1B.2_274_10000_0.8464_0.9443_1.png
                gene_name: SPRR1B
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SPRR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.876654e-03	ci left: 9.468981e-01	ci right 9.554367e-01	k: 9513	n:10000
Cons ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
SPRR2B   10000 perm   1 sec   (7107 perm/sec)   p_kst 3.630000e-01   p_cons 7.129000e-01   p_joint 9.513000e-01

Outputting figure to mutsig2_images.part000000000166/SPRR2B.2_223_10000_0.363_0.7129_0.9513.png
                gene_name: SPRR2B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 77 percent done.
SPRR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
Cons ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
KS ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
SPRR4   10000 perm   1 sec   (7093 perm/sec)   p_kst 3.023000e-01   p_cons 5.213000e-01   p_joint 3.633000e-01

Outputting figure to mutsig2_images.part000000000166/SPRR4.2_244_10000_0.3023_0.5213_0.3633.png
                gene_name: SPRR4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 78 percent done.
SPRY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
SPRY2   10000 perm   1 sec   (7100 perm/sec)   p_kst 8.200000e-01   p_cons 2.940000e-02   p_joint 1.037000e-01

Joint ci ratio: 3.307673e-02	ci left: 4.056655e-01	ci right 4.193599e-01	k: 8250	n:20000
Cons ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
KS ci ratio: 1.305970e-02	ci left: 8.129354e-01	ci right 8.236719e-01	k: 16367	n:20000
SPRY2   20000 perm   3 sec   (6089 perm/sec)   p_kst 8.183500e-01   p_cons 2.640000e-02   p_joint 4.125000e-01

Joint ci ratio: 5.982359e-02	ci left: 1.214419e-01	ci right 1.289642e-01	k: 3755	n:30000
Cons ci ratio: 1.370829e-01	ci left: 2.471178e-02	ci right 2.838068e-02	k: 795	n:30000
KS ci ratio: 1.061345e-02	ci left: 8.153359e-01	ci right 8.240688e-01	k: 24592	n:30000
SPRY2   30000 perm   5 sec   (5705 perm/sec)   p_kst 8.197333e-01   p_cons 2.650000e-02   p_joint 1.251667e-01

Joint ci ratio: 1.693303e-02	ci left: 5.677344e-01	ci right 5.774551e-01	k: 22904	n:40000
Cons ci ratio: 1.188520e-01	ci left: 2.489938e-02	ci right 2.806987e-02	k: 1058	n:40000
KS ci ratio: 9.155164e-03	ci left: 8.171066e-01	ci right 8.246467e-01	k: 32836	n:40000
SPRY2   40000 perm   7 sec   (5529 perm/sec)   p_kst 8.209000e-01   p_cons 2.645000e-02   p_joint 5.726000e-01

Joint ci ratio: 3.237966e-02	ci left: 2.229962e-01	ci right 2.303556e-01	k: 11333	n:50000
Cons ci ratio: 1.074249e-01	ci left: 2.454481e-02	ci right 2.735059e-02	k: 1296	n:50000
KS ci ratio: 8.176345e-03	ci left: 8.179537e-01	ci right 8.246889e-01	k: 41067	n:50000
SPRY2   50000 perm   9 sec   (5386 perm/sec)   p_kst 8.213400e-01   p_cons 2.592000e-02   p_joint 2.266600e-01

Joint ci ratio: 1.383108e-02	ci left: 5.684463e-01	ci right 5.763800e-01	k: 34345	n:60000
Cons ci ratio: 9.863268e-02	ci left: 2.438343e-02	ci right 2.692940e-02	k: 1538	n:60000
KS ci ratio: 7.481896e-03	ci left: 8.175397e-01	ci right 8.236960e-01	k: 49238	n:60000
SPRY2   60000 perm   11 sec   (5242 perm/sec)   p_kst 8.206333e-01   p_cons 2.563333e-02   p_joint 5.724167e-01

Outputting figure to mutsig2_images.part000000000166/SPRY2.2_952_60000_0.82063_0.025633_0.57242.png
                gene_name: SPRY2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 80 percent done.
SPSB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
SPSB1   10000 perm   1 sec   (6741 perm/sec)   p_kst 8.538000e-01   p_cons 5.745000e-01   p_joint 9.701000e-01

Outputting figure to mutsig2_images.part000000000166/SPSB1.2_830_10000_0.8538_0.5745_0.9701.png
                gene_name: SPSB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
SPSB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
Cons ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
SPSB2   10000 perm   1 sec   (6767 perm/sec)   p_kst 6.532000e-01   p_cons 1.467000e-01   p_joint 7.125000e-01

Outputting figure to mutsig2_images.part000000000166/SPSB2.2_800_10000_0.6532_0.1467_0.7125.png
                gene_name: SPSB2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 83 percent done.
SRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
Cons ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
SRA1   10000 perm   1 sec   (7237 perm/sec)   p_kst 1.300000e-03   p_cons 5.370000e-01   p_joint 1.100000e-03

Joint ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
Cons ci ratio: 2.558911e-02	ci left: 5.329122e-01	ci right 5.467763e-01	k: 10797	n:20000
KS ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
SRA1   20000 perm   3 sec   (6355 perm/sec)   p_kst 9.000000e-04   p_cons 5.398500e-01   p_joint 1.300000e-03

Joint ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
Cons ci ratio: 2.080224e-02	ci left: 5.363749e-01	ci right 5.476836e-01	k: 16261	n:30000
KS ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
SRA1   30000 perm   5 sec   (6004 perm/sec)   p_kst 9.333333e-04   p_cons 5.420333e-01   p_joint 9.333333e-04

Joint ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
Cons ci ratio: 1.798404e-02	ci left: 5.380027e-01	ci right 5.477911e-01	k: 21716	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
SRA1   40000 perm   7 sec   (5641 perm/sec)   p_kst 9.750000e-04   p_cons 5.429000e-01   p_joint 9.750000e-04

Joint ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
Cons ci ratio: 1.612835e-02	ci left: 5.372003e-01	ci right 5.459549e-01	k: 27079	n:50000
KS ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
SRA1   50000 perm   9 sec   (5510 perm/sec)   p_kst 9.400000e-04   p_cons 5.415800e-01   p_joint 5.600000e-04

Joint ci ratio: 5.841351e-01	ci left: 5.328901e-04	ci right 9.843421e-04	k: 44	n:60000
Cons ci ratio: 1.475670e-02	ci left: 5.364521e-01	ci right 5.444439e-01	k: 32427	n:60000
KS ci ratio: 4.786328e-01	ci left: 8.508389e-04	ci right 1.399260e-03	k: 66	n:60000
SRA1   60000 perm   11 sec   (5235 perm/sec)   p_kst 1.100000e-03   p_cons 5.404500e-01   p_joint 7.333333e-04

Joint ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
Cons ci ratio: 1.367448e-02	ci left: 5.362992e-01	ci right 5.436975e-01	k: 37800	n:70000
KS ci ratio: 4.326349e-01	ci left: 9.190414e-04	ci right 1.438021e-03	k: 81	n:70000
SRA1   70000 perm   14 sec   (5155 perm/sec)   p_kst 1.157143e-03   p_cons 5.400000e-01   p_joint 1.285714e-03

Joint ci ratio: 2.761462e-01	ci left: 2.165860e-03	ci right 2.870991e-03	k: 200	n:80000
Cons ci ratio: 1.278972e-02	ci left: 5.366012e-01	ci right 5.435209e-01	k: 43205	n:80000
KS ci ratio: 3.957347e-01	ci left: 9.833624e-04	ci right 1.478950e-03	k: 97	n:80000
SRA1   80000 perm   16 sec   (5076 perm/sec)   p_kst 1.212500e-03   p_cons 5.400625e-01   p_joint 2.500000e-03

Joint ci ratio: 3.546575e-01	ci left: 1.115706e-03	ci right 1.606229e-03	k: 121	n:90000
Cons ci ratio: 1.205765e-02	ci left: 5.368260e-01	ci right 5.433492e-01	k: 48608	n:90000
KS ci ratio: 3.735268e-01	ci left: 9.945505e-04	ci right 1.460778e-03	k: 109	n:90000
SRA1   90000 perm   18 sec   (4997 perm/sec)   p_kst 1.211111e-03   p_cons 5.400889e-01   p_joint 1.344444e-03

Joint ci ratio: 4.524706e-01	ci left: 5.811024e-04	ci right 9.289144e-04	k: 74	n:100000
Cons ci ratio: 1.143152e-02	ci left: 5.373150e-01	ci right 5.435026e-01	k: 54041	n:100000
KS ci ratio: 3.561462e-01	ci left: 9.950163e-04	ci right 1.434737e-03	k: 120	n:100000
SRA1   100000 perm   20 sec   (4916 perm/sec)   p_kst 1.200000e-03   p_cons 5.404100e-01   p_joint 7.400000e-04

Joint ci ratio: 4.717624e-01	ci left: 4.800734e-04	ci right 7.836279e-04	k: 68	n:110000
Cons ci ratio: 1.091333e-02	ci left: 5.368309e-01	ci right 5.427307e-01	k: 59376	n:110000
KS ci ratio: 3.299104e-01	ci left: 1.070745e-03	ci right 1.501696e-03	k: 140	n:110000
SRA1   110000 perm   23 sec   (4837 perm/sec)   p_kst 1.272727e-03   p_cons 5.397818e-01   p_joint 6.181818e-04

Joint ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
Cons ci ratio: 1.043468e-02	ci left: 5.376252e-01	ci right 5.432729e-01	k: 64854	n:120000
KS ci ratio: 3.106689e-01	ci left: 1.119473e-03	ci right 1.538557e-03	k: 158	n:120000
SRA1   120000 perm   25 sec   (4760 perm/sec)   p_kst 1.316667e-03   p_cons 5.404500e-01   p_joint 6.500000e-04

Joint ci ratio: 4.275672e-01	ci left: 5.085621e-04	ci right 7.914086e-04	k: 83	n:130000
Cons ci ratio: 1.002230e-02	ci left: 5.378863e-01	ci right 5.433119e-01	k: 70278	n:130000
KS ci ratio: 3.022379e-01	ci left: 1.097266e-03	ci right 1.494747e-03	k: 167	n:130000
SRA1   130000 perm   28 sec   (4683 perm/sec)   p_kst 1.284615e-03   p_cons 5.406000e-01   p_joint 6.384615e-04

Joint ci ratio: 4.063486e-01	ci left: 5.297817e-04	ci right 8.058674e-04	k: 92	n:140000
Cons ci ratio: 9.653155e-03	ci left: 5.382210e-01	ci right 5.434488e-01	k: 75717	n:140000
KS ci ratio: 2.887952e-01	ci left: 1.124710e-03	ci right 1.510706e-03	k: 183	n:140000
SRA1   140000 perm   30 sec   (4606 perm/sec)   p_kst 1.307143e-03   p_cons 5.408357e-01   p_joint 6.571429e-04

Joint ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
Cons ci ratio: 9.322380e-03	ci left: 5.384941e-01	ci right 5.435443e-01	k: 81153	n:150000
KS ci ratio: 2.791040e-01	ci left: 1.130227e-03	ci right 1.502812e-03	k: 196	n:150000
SRA1   150000 perm   33 sec   (4529 perm/sec)   p_kst 1.306667e-03   p_cons 5.410200e-01   p_joint 6.533333e-04

Joint ci ratio: 3.842615e-01	ci left: 5.254791e-04	ci right 7.806806e-04	k: 103	n:160000
Cons ci ratio: 9.022068e-03	ci left: 5.388108e-01	ci right 5.437002e-01	k: 86601	n:160000
KS ci ratio: 2.722817e-01	ci left: 1.117767e-03	ci right 1.475698e-03	k: 206	n:160000
SRA1   160000 perm   36 sec   (4436 perm/sec)   p_kst 1.287500e-03   p_cons 5.412562e-01   p_joint 6.437500e-04

Joint ci ratio: 3.719474e-01	ci left: 5.318327e-04	ci right 7.798291e-04	k: 110	n:170000
Cons ci ratio: 8.752339e-03	ci left: 5.389041e-01	ci right 5.436474e-01	k: 92017	n:170000
KS ci ratio: 2.647176e-01	ci left: 1.117853e-03	ci right 1.464220e-03	k: 218	n:170000
SRA1   170000 perm   39 sec   (4368 perm/sec)   p_kst 1.282353e-03   p_cons 5.412765e-01   p_joint 6.470588e-04

Joint ci ratio: 3.577251e-01	ci left: 5.477053e-04	ci right 7.910666e-04	k: 119	n:180000
Cons ci ratio: 8.516198e-03	ci left: 5.383611e-01	ci right 5.429710e-01	k: 97320	n:180000
KS ci ratio: 2.566408e-01	ci left: 1.128448e-03	ci right 1.465721e-03	k: 232	n:180000
SRA1   180000 perm   42 sec   (4303 perm/sec)   p_kst 1.288889e-03   p_cons 5.406667e-01   p_joint 6.611111e-04

Joint ci ratio: 3.477266e-01	ci left: 5.524574e-04	ci right 7.895240e-04	k: 126	n:190000
Cons ci ratio: 8.292371e-03	ci left: 5.382243e-01	ci right 5.427113e-01	k: 102689	n:190000
KS ci ratio: 2.492608e-01	ci left: 1.138070e-03	ci right 1.466922e-03	k: 246	n:190000
SRA1   190000 perm   45 sec   (4239 perm/sec)   p_kst 1.294737e-03   p_cons 5.404684e-01   p_joint 6.631579e-04

Joint ci ratio: 3.385221e-01	ci left: 5.568193e-04	ci right 7.880517e-04	k: 133	n:200000
Cons ci ratio: 8.078964e-03	ci left: 5.384929e-01	ci right 5.428659e-01	k: 108136	n:200000
KS ci ratio: 2.420191e-01	ci left: 1.151552e-03	ci right 1.473181e-03	k: 261	n:200000
SRA1   200000 perm   48 sec   (4177 perm/sec)   p_kst 1.305000e-03   p_cons 5.406800e-01   p_joint 6.650000e-04

Joint ci ratio: 3.300119e-01	ci left: 5.608406e-04	ci right 7.866456e-04	k: 140	n:210000
Cons ci ratio: 7.889315e-03	ci left: 5.382275e-01	ci right 5.424952e-01	k: 113476	n:210000
KS ci ratio: 2.353740e-01	ci left: 1.163875e-03	ci right 1.478721e-03	k: 276	n:210000
SRA1   210000 perm   51 sec   (4114 perm/sec)   p_kst 1.314286e-03   p_cons 5.403619e-01   p_joint 6.666667e-04

Joint ci ratio: 3.178434e-01	ci left: 5.812848e-04	ci right 8.049379e-04	k: 151	n:220000
Cons ci ratio: 7.709172e-03	ci left: 5.381965e-01	ci right 5.423661e-01	k: 118862	n:220000
KS ci ratio: 2.269251e-01	ci left: 1.200903e-03	ci right 1.512473e-03	k: 297	n:220000
SRA1   220000 perm   55 sec   (4033 perm/sec)   p_kst 1.350000e-03   p_cons 5.402818e-01   p_joint 6.863636e-04

Joint ci ratio: 3.137440e-01	ci left: 5.720242e-04	ci right 7.887065e-04	k: 155	n:230000
Cons ci ratio: 7.538258e-03	ci left: 5.383389e-01	ci right 5.424166e-01	k: 124287	n:230000
KS ci ratio: 2.221320e-01	ci left: 1.202033e-03	ci right 1.506409e-03	k: 310	n:230000
SRA1   230000 perm   58 sec   (3969 perm/sec)   p_kst 1.347826e-03   p_cons 5.403783e-01   p_joint 6.739130e-04

Joint ci ratio: 3.078797e-01	ci left: 5.712402e-04	ci right 7.827874e-04	k: 161	n:240000
Cons ci ratio: 7.377981e-03	ci left: 5.384870e-01	ci right 5.424787e-01	k: 129716	n:240000
KS ci ratio: 2.172947e-01	ci left: 1.207072e-03	ci right 1.505180e-03	k: 324	n:240000
SRA1   240000 perm   61 sec   (3911 perm/sec)   p_kst 1.350000e-03   p_cons 5.404833e-01   p_joint 6.708333e-04

Joint ci ratio: 3.023323e-01	ci left: 5.705535e-04	ci right 7.773076e-04	k: 167	n:250000
Cons ci ratio: 7.230770e-03	ci left: 5.384000e-01	ci right 5.423111e-01	k: 135089	n:250000
KS ci ratio: 2.137093e-01	ci left: 1.200414e-03	ci right 1.491344e-03	k: 335	n:250000
SRA1   250000 perm   65 sec   (3854 perm/sec)   p_kst 1.340000e-03   p_cons 5.403560e-01   p_joint 6.680000e-04

Joint ci ratio: 3.005514e-01	ci left: 5.557191e-04	ci right 7.556846e-04	k: 169	n:260000
Cons ci ratio: 7.090001e-03	ci left: 5.384628e-01	ci right 5.422979e-01	k: 140499	n:260000
KS ci ratio: 2.099930e-01	ci left: 1.197949e-03	ci right 1.482584e-03	k: 347	n:260000
SRA1   260000 perm   68 sec   (3802 perm/sec)   p_kst 1.334615e-03   p_cons 5.403808e-01   p_joint 6.500000e-04

Joint ci ratio: 2.458465e-01	ci left: 8.251652e-04	ci right 1.059834e-03	k: 253	n:270000
Cons ci ratio: 6.959896e-03	ci left: 5.383253e-01	ci right 5.420887e-01	k: 145856	n:270000
KS ci ratio: 2.036510e-01	ci left: 1.230845e-03	ci right 1.513366e-03	k: 369	n:270000
SRA1   270000 perm   72 sec   (3750 perm/sec)   p_kst 1.366667e-03   p_cons 5.402074e-01   p_joint 9.370370e-04

Joint ci ratio: 2.380074e-01	ci left: 8.527313e-04	ci right 1.086368e-03	k: 270	n:280000
Cons ci ratio: 6.832080e-03	ci left: 5.385340e-01	ci right 5.422294e-01	k: 151307	n:280000
KS ci ratio: 1.986134e-01	ci left: 1.251328e-03	ci right 1.530585e-03	k: 388	n:280000
SRA1   280000 perm   76 sec   (3698 perm/sec)   p_kst 1.385714e-03   p_cons 5.403821e-01   p_joint 9.642857e-04

Joint ci ratio: 2.757137e-01	ci left: 6.006186e-04	ci right 7.957903e-04	k: 201	n:290000
Cons ci ratio: 6.714596e-03	ci left: 5.384668e-01	ci right 5.420979e-01	k: 156682	n:290000
KS ci ratio: 1.958644e-01	ci left: 1.244236e-03	ci right 1.517608e-03	k: 399	n:290000
SRA1   290000 perm   79 sec   (3648 perm/sec)   p_kst 1.375862e-03   p_cons 5.402828e-01   p_joint 6.931034e-04

Joint ci ratio: 2.704106e-01	ci left: 6.054394e-04	ci right 7.977515e-04	k: 209	n:300000
Cons ci ratio: 6.600004e-03	ci left: 5.386279e-01	ci right 5.421979e-01	k: 162124	n:300000
KS ci ratio: 1.929916e-01	ci left: 1.240814e-03	ci right 1.508967e-03	k: 411	n:300000
SRA1   300000 perm   83 sec   (3599 perm/sec)   p_kst 1.370000e-03   p_cons 5.404133e-01   p_joint 6.966667e-04

Joint ci ratio: 2.647950e-01	ci left: 6.129943e-04	ci right 8.029923e-04	k: 218	n:310000
Cons ci ratio: 6.497874e-03	ci left: 5.382597e-01	ci right 5.417718e-01	k: 167405	n:310000
KS ci ratio: 1.895711e-01	ci left: 1.246858e-03	ci right 1.510991e-03	k: 426	n:310000
SRA1   310000 perm   87 sec   (3551 perm/sec)   p_kst 1.374194e-03   p_cons 5.400161e-01   p_joint 7.032258e-04

Joint ci ratio: 2.595154e-01	ci left: 6.201155e-04	ci right 8.078673e-04	k: 227	n:320000
Cons ci ratio: 6.395466e-03	ci left: 5.382931e-01	ci right 5.417499e-01	k: 172807	n:320000
KS ci ratio: 1.861156e-01	ci left: 1.255544e-03	ci right 1.516120e-03	k: 442	n:320000
SRA1   320000 perm   91 sec   (3506 perm/sec)   p_kst 1.381250e-03   p_cons 5.400219e-01   p_joint 7.093750e-04

Joint ci ratio: 2.163379e-01	ci left: 8.864515e-04	ci right 1.104283e-03	k: 327	n:330000
Cons ci ratio: 6.292721e-03	ci left: 5.387220e-01	ci right 5.421257e-01	k: 178340	n:330000
KS ci ratio: 1.830421e-01	ci left: 1.260851e-03	ci right 1.517729e-03	k: 457	n:330000
SRA1   330000 perm   95 sec   (3462 perm/sec)   p_kst 1.384848e-03   p_cons 5.404242e-01   p_joint 9.909091e-04

Joint ci ratio: 2.143872e-01	ci left: 8.770741e-04	ci right 1.090402e-03	k: 333	n:340000
Cons ci ratio: 6.199573e-03	ci left: 5.387407e-01	ci right 5.420939e-01	k: 183742	n:340000
KS ci ratio: 1.814657e-01	ci left: 1.246223e-03	ci right 1.497693e-03	k: 465	n:340000
SRA1   340000 perm   99 sec   (3419 perm/sec)   p_kst 1.367647e-03   p_cons 5.404176e-01   p_joint 9.794118e-04

Joint ci ratio: 2.121762e-01	ci left: 8.709463e-04	ci right 1.080315e-03	k: 340	n:350000
Cons ci ratio: 6.110830e-03	ci left: 5.387272e-01	ci right 5.420321e-01	k: 189133	n:350000
KS ci ratio: 1.793619e-01	ci left: 1.240625e-03	ci right 1.487749e-03	k: 476	n:350000
SRA1   350000 perm   104 sec   (3376 perm/sec)   p_kst 1.360000e-03   p_cons 5.403800e-01   p_joint 9.714286e-04

Joint ci ratio: 2.097308e-01	ci left: 8.678015e-04	ci right 1.073701e-03	k: 348	n:360000
Cons ci ratio: 6.025387e-03	ci left: 5.387481e-01	ci right 5.420068e-01	k: 194536	n:360000
KS ci ratio: 1.773295e-01	ci left: 1.235355e-03	ci right 1.478341e-03	k: 487	n:360000
SRA1   360000 perm   108 sec   (3337 perm/sec)   p_kst 1.352778e-03   p_cons 5.403778e-01   p_joint 9.666667e-04

Joint ci ratio: 2.076593e-01	ci left: 8.622773e-04	ci right 1.064588e-03	k: 355	n:370000
Cons ci ratio: 5.944434e-03	ci left: 5.386844e-01	ci right 5.418988e-01	k: 199908	n:370000
KS ci ratio: 1.750138e-01	ci left: 1.235553e-03	ci right 1.475069e-03	k: 500	n:370000
SRA1   370000 perm   112 sec   (3299 perm/sec)   p_kst 1.351351e-03   p_cons 5.402919e-01   p_joint 9.594595e-04

Joint ci ratio: 2.034166e-01	ci left: 8.770287e-04	ci right 1.078074e-03	k: 370	n:380000
Cons ci ratio: 5.862929e-03	ci left: 5.389402e-01	ci right 5.421118e-01	k: 205400	n:380000
KS ci ratio: 1.712914e-01	ci left: 1.258425e-03	ci right 1.496651e-03	k: 522	n:380000
SRA1   380000 perm   117 sec   (3254 perm/sec)   p_kst 1.373684e-03   p_cons 5.405263e-01   p_joint 9.736842e-04

Joint ci ratio: 2.007293e-01	ci left: 8.788846e-04	ci right 1.077368e-03	k: 380	n:390000
Cons ci ratio: 5.786537e-03	ci left: 5.390241e-01	ci right 5.421548e-01	k: 210830	n:390000
KS ci ratio: 1.685729e-01	ci left: 1.267894e-03	ci right 1.503716e-03	k: 539	n:390000
SRA1   390000 perm   121 sec   (3214 perm/sec)   p_kst 1.382051e-03   p_cons 5.405897e-01   p_joint 9.743590e-04

Joint ci ratio: 1.981458e-01	ci left: 8.806642e-04	ci right 1.076680e-03	k: 390	n:400000
Cons ci ratio: 5.713860e-03	ci left: 5.390341e-01	ci right 5.421253e-01	k: 216232	n:400000
KS ci ratio: 1.658308e-01	ci left: 1.279315e-03	ci right 1.513004e-03	k: 557	n:400000
SRA1   400000 perm   126 sec   (3172 perm/sec)   p_kst 1.392500e-03   p_cons 5.405800e-01   p_joint 9.750000e-04

Joint ci ratio: 1.946899e-01	ci left: 8.916523e-04	ci right 1.086243e-03	k: 404	n:410000
Cons ci ratio: 5.644159e-03	ci left: 5.390170e-01	ci right 5.420703e-01	k: 221623	n:410000
KS ci ratio: 1.632184e-01	ci left: 1.290207e-03	ci right 1.521809e-03	k: 575	n:410000
SRA1   410000 perm   131 sec   (3136 perm/sec)   p_kst 1.402439e-03   p_cons 5.405439e-01   p_joint 9.853659e-04

Joint ci ratio: 1.927955e-01	ci left: 8.885461e-04	ci right 1.080350e-03	k: 412	n:420000
Cons ci ratio: 5.575959e-03	ci left: 5.390890e-01	ci right 5.421057e-01	k: 227051	n:420000
KS ci ratio: 1.615447e-01	ci left: 1.286898e-03	ci right 1.515307e-03	k: 587	n:420000
SRA1   420000 perm   135 sec   (3103 perm/sec)   p_kst 1.397619e-03   p_cons 5.405976e-01   p_joint 9.809524e-04

Joint ci ratio: 1.731378e-01	ci left: 1.087609e-03	ci right 1.295950e-03	k: 511	n:430000
Cons ci ratio: 5.511696e-03	ci left: 5.390207e-01	ci right 5.420021e-01	k: 232420	n:430000
KS ci ratio: 1.601890e-01	ci left: 1.279290e-03	ci right 1.504259e-03	k: 597	n:430000
SRA1   430000 perm   140 sec   (3068 perm/sec)   p_kst 1.388372e-03   p_cons 5.405116e-01   p_joint 1.188372e-03

Joint ci ratio: 1.574471e-01	ci left: 1.296046e-03	ci right 1.519693e-03	k: 618	n:440000
Cons ci ratio: 5.447784e-03	ci left: 5.391216e-01	ci right 5.420688e-01	k: 237862	n:440000
KS ci ratio: 1.574471e-01	ci left: 1.296046e-03	ci right 1.519693e-03	k: 618	n:440000
SRA1   440000 perm   145 sec   (3031 perm/sec)   p_kst 1.404545e-03   p_cons 5.405955e-01   p_joint 1.404545e-03

Joint ci ratio: 1.561912e-01	ci left: 1.288595e-03	ci right 1.509016e-03	k: 628	n:450000
Cons ci ratio: 5.385996e-03	ci left: 5.392226e-01	ci right 5.421369e-01	k: 243306	n:450000
KS ci ratio: 1.561912e-01	ci left: 1.288595e-03	ci right 1.509016e-03	k: 628	n:450000
SRA1   450000 perm   150 sec   (2997 perm/sec)   p_kst 1.395556e-03   p_cons 5.406800e-01   p_joint 1.395556e-03

Joint ci ratio: 1.541218e-01	ci left: 1.296104e-03	ci right 1.514601e-03	k: 645	n:460000
Cons ci ratio: 5.328619e-03	ci left: 5.390998e-01	ci right 5.419823e-01	k: 248649	n:460000
KS ci ratio: 1.541218e-01	ci left: 1.296104e-03	ci right 1.514601e-03	k: 645	n:460000
SRA1   460000 perm   155 sec   (2964 perm/sec)   p_kst 1.402174e-03   p_cons 5.405413e-01   p_joint 1.402174e-03

Joint ci ratio: 1.516751e-01	ci left: 1.311500e-03	ci right 1.528764e-03	k: 666	n:470000
Cons ci ratio: 5.271727e-03	ci left: 5.391059e-01	ci right 5.419575e-01	k: 254050	n:470000
KS ci ratio: 1.516751e-01	ci left: 1.311500e-03	ci right 1.528764e-03	k: 666	n:470000
SRA1   470000 perm   160 sec   (2933 perm/sec)   p_kst 1.417021e-03   p_cons 5.405319e-01   p_joint 1.417021e-03

Joint ci ratio: 1.499977e-01	ci left: 1.314248e-03	ci right 1.529343e-03	k: 681	n:480000
Cons ci ratio: 5.216028e-03	ci left: 5.391681e-01	ci right 5.419898e-01	k: 259478	n:480000
KS ci ratio: 1.499977e-01	ci left: 1.314248e-03	ci right 1.529343e-03	k: 681	n:480000
SRA1   480000 perm   165 sec   (2902 perm/sec)   p_kst 1.418750e-03   p_cons 5.405792e-01   p_joint 1.418750e-03

Joint ci ratio: 1.769988e-01	ci left: 9.114945e-04	ci right 1.090409e-03	k: 489	n:490000
Cons ci ratio: 5.161295e-03	ci left: 5.393014e-01	ci right 5.420941e-01	k: 264942	n:490000
KS ci ratio: 1.481621e-01	ci left: 1.320826e-03	ci right 1.534118e-03	k: 698	n:490000
SRA1   490000 perm   171 sec   (2871 perm/sec)   p_kst 1.424490e-03   p_cons 5.406980e-01   p_joint 9.979592e-04

Joint ci ratio: 1.755717e-01	ci left: 9.085585e-04	ci right 1.085306e-03	k: 497	n:500000
Cons ci ratio: 5.110326e-03	ci left: 5.392274e-01	ci right 5.419921e-01	k: 270305	n:500000
KS ci ratio: 1.470103e-01	ci left: 1.315597e-03	ci right 1.526248e-03	k: 709	n:500000
SRA1   500000 perm   176 sec   (2841 perm/sec)   p_kst 1.418000e-03   p_cons 5.406100e-01   p_joint 9.940000e-04

Joint ci ratio: 1.733235e-01	ci left: 9.151211e-04	ci right 1.090627e-03	k: 510	n:510000
Cons ci ratio: 5.060579e-03	ci left: 5.391820e-01	ci right 5.419195e-01	k: 275681	n:510000
KS ci ratio: 1.453811e-01	ci left: 1.320026e-03	ci right 1.528841e-03	k: 725	n:510000
SRA1   510000 perm   182 sec   (2810 perm/sec)   p_kst 1.421569e-03   p_cons 5.405510e-01   p_joint 1.000000e-03

Joint ci ratio: 1.723155e-01	ci left: 9.085617e-04	ci right 1.081691e-03	k: 516	n:520000
Cons ci ratio: 5.012159e-03	ci left: 5.391481e-01	ci right 5.418591e-01	k: 281062	n:520000
KS ci ratio: 1.442926e-01	ci left: 1.315028e-03	ci right 1.521360e-03	k: 736	n:520000
SRA1   520000 perm   187 sec   (2779 perm/sec)   p_kst 1.415385e-03   p_cons 5.405038e-01   p_joint 9.923077e-04

Joint ci ratio: 1.705109e-01	ci left: 9.112835e-04	ci right 1.082926e-03	k: 527	n:530000
Cons ci ratio: 4.964122e-03	ci left: 5.392138e-01	ci right 5.418990e-01	k: 286495	n:530000
KS ci ratio: 1.429413e-01	ci left: 1.315682e-03	ci right 1.520019e-03	k: 750	n:530000
SRA1   530000 perm   193 sec   (2749 perm/sec)   p_kst 1.415094e-03   p_cons 5.405566e-01   p_joint 9.943396e-04

Joint ci ratio: 1.689188e-01	ci left: 9.121398e-04	ci right 1.082176e-03	k: 537	n:540000
Cons ci ratio: 4.917844e-03	ci left: 5.392363e-01	ci right 5.418966e-01	k: 291906	n:540000
KS ci ratio: 1.417201e-01	ci left: 1.314534e-03	ci right 1.516801e-03	k: 763	n:540000
SRA1   540000 perm   198 sec   (2722 perm/sec)   p_kst 1.412963e-03   p_cons 5.405667e-01   p_joint 9.944444e-04

Joint ci ratio: 1.675236e-01	ci left: 9.112302e-04	ci right 1.079552e-03	k: 546	n:550000
Cons ci ratio: 4.873835e-03	ci left: 5.391564e-01	ci right 5.417923e-01	k: 297261	n:550000
KS ci ratio: 1.407112e-01	ci left: 1.309927e-03	ci right 1.509930e-03	k: 774	n:550000
SRA1   550000 perm   204 sec   (2694 perm/sec)   p_kst 1.407273e-03   p_cons 5.404745e-01   p_joint 9.927273e-04

Joint ci ratio: 1.660130e-01	ci left: 9.120701e-04	ci right 1.078876e-03	k: 556	n:560000
Cons ci ratio: 4.829094e-03	ci left: 5.392740e-01	ci right 5.418863e-01	k: 302725	n:560000
KS ci ratio: 1.393688e-01	ci left: 1.312383e-03	ci right 1.510690e-03	k: 789	n:560000
SRA1   560000 perm   210 sec   (2669 perm/sec)   p_kst 1.408929e-03   p_cons 5.405804e-01   p_joint 9.928571e-04

Joint ci ratio: 1.642528e-01	ci left: 9.162516e-04	ci right 1.081870e-03	k: 568	n:570000
Cons ci ratio: 4.786966e-03	ci left: 5.392420e-01	ci right 5.418313e-01	k: 308106	n:570000
KS ci ratio: 1.378927e-01	ci left: 1.318149e-03	ci right 1.515045e-03	k: 806	n:570000
SRA1   570000 perm   216 sec   (2645 perm/sec)   p_kst 1.414035e-03   p_cons 5.405368e-01   p_joint 9.964912e-04

Joint ci ratio: 1.626876e-01	ci left: 9.186439e-04	ci right 1.082958e-03	k: 579	n:580000
Cons ci ratio: 4.746119e-03	ci left: 5.391905e-01	ci right 5.417574e-01	k: 313475	n:580000
KS ci ratio: 1.366287e-01	ci left: 1.320396e-03	ci right 1.515673e-03	k: 821	n:580000
SRA1   580000 perm   221 sec   (2621 perm/sec)   p_kst 1.415517e-03   p_cons 5.404741e-01   p_joint 9.982759e-04

Joint ci ratio: 1.357239e-01	ci left: 1.316025e-03	ci right 1.509263e-03	k: 832	n:590000
Cons ci ratio: 4.704870e-03	ci left: 5.392917e-01	ci right 5.418367e-01	k: 318933	n:590000
KS ci ratio: 1.357239e-01	ci left: 1.316025e-03	ci right 1.509263e-03	k: 832	n:590000
SRA1   590000 perm   227 sec   (2597 perm/sec)   p_kst 1.410169e-03   p_cons 5.405644e-01   p_joint 1.410169e-03

Joint ci ratio: 1.349170e-01	ci left: 1.310194e-03	ci right 1.501339e-03	k: 842	n:600000
Cons ci ratio: 4.667153e-03	ci left: 5.391263e-01	ci right 5.416500e-01	k: 324233	n:600000
KS ci ratio: 1.349170e-01	ci left: 1.310194e-03	ci right 1.501339e-03	k: 842	n:600000
SRA1   600000 perm   233 sec   (2574 perm/sec)   p_kst 1.403333e-03   p_cons 5.403883e-01   p_joint 1.403333e-03

Joint ci ratio: 1.274187e-01	ci left: 1.450452e-03	ci right 1.649412e-03	k: 944	n:610000
Cons ci ratio: 4.627699e-03	ci left: 5.392484e-01	ci right 5.417512e-01	k: 329705	n:610000
KS ci ratio: 1.334988e-01	ci left: 1.317233e-03	ci right 1.507225e-03	k: 860	n:610000
SRA1   610000 perm   239 sec   (2552 perm/sec)   p_kst 1.409836e-03   p_cons 5.405000e-01   p_joint 1.547541e-03

Joint ci ratio: 7.396660e-02	ci left: 4.342827e-03	ci right 4.677958e-03	k: 2795	n:620000
Cons ci ratio: 4.591882e-03	ci left: 5.390795e-01	ci right 5.415621e-01	k: 334999	n:620000
KS ci ratio: 1.319742e-01	ci left: 1.327175e-03	ci right 1.516243e-03	k: 880	n:620000
SRA1   620000 perm   245 sec   (2528 perm/sec)   p_kst 1.419355e-03   p_cons 5.403210e-01   p_joint 4.508065e-03

Joint ci ratio: 7.345643e-02	ci left: 4.334656e-03	ci right 4.666751e-03	k: 2834	n:630000
Cons ci ratio: 4.554452e-03	ci left: 5.391811e-01	ci right 5.416439e-01	k: 340460	n:630000
KS ci ratio: 1.311583e-01	ci left: 1.322994e-03	ci right 1.510211e-03	k: 891	n:630000
SRA1   630000 perm   251 sec   (2506 perm/sec)   p_kst 1.414286e-03   p_cons 5.404127e-01   p_joint 4.498413e-03

Joint ci ratio: 7.295667e-02	ci left: 4.326748e-03	ci right 4.655887e-03	k: 2873	n:640000
Cons ci ratio: 4.518178e-03	ci left: 5.392515e-01	ci right 5.416950e-01	k: 345903	n:640000
KS ci ratio: 1.302850e-01	ci left: 1.320459e-03	ci right 1.505976e-03	k: 903	n:640000
SRA1   640000 perm   258 sec   (2483 perm/sec)   p_kst 1.410938e-03   p_cons 5.404734e-01   p_joint 4.489062e-03

Joint ci ratio: 7.169235e-02	ci left: 4.414275e-03	ci right 4.744011e-03	k: 2975	n:650000
Cons ci ratio: 4.482770e-03	ci left: 5.393183e-01	ci right 5.417429e-01	k: 351345	n:650000
KS ci ratio: 1.292173e-01	ci left: 1.322472e-03	ci right 1.506633e-03	k: 918	n:650000
SRA1   650000 perm   264 sec   (2458 perm/sec)   p_kst 1.412308e-03   p_cons 5.405308e-01   p_joint 4.576923e-03

Joint ci ratio: 7.193807e-02	ci left: 4.317626e-03	ci right 4.641293e-03	k: 2955	n:660000
Cons ci ratio: 4.449038e-03	ci left: 5.392877e-01	ci right 5.416938e-01	k: 356724	n:660000
KS ci ratio: 1.285204e-01	ci left: 1.317097e-03	ci right 1.499445e-03	k: 928	n:660000
SRA1   660000 perm   271 sec   (2436 perm/sec)   p_kst 1.406061e-03   p_cons 5.404909e-01   p_joint 4.477273e-03

Joint ci ratio: 7.139667e-02	ci left: 4.319144e-03	ci right 4.640387e-03	k: 3000	n:670000
Cons ci ratio: 4.416227e-03	ci left: 5.392386e-01	ci right 5.416267e-01	k: 362090	n:670000
KS ci ratio: 1.275628e-01	ci left: 1.317665e-03	ci right 1.498630e-03	k: 942	n:670000
SRA1   670000 perm   277 sec   (2415 perm/sec)   p_kst 1.405970e-03   p_cons 5.404328e-01   p_joint 4.477612e-03

Joint ci ratio: 7.066948e-02	ci left: 4.345186e-03	ci right 4.664940e-03	k: 3062	n:680000
Cons ci ratio: 4.383925e-03	ci left: 5.392146e-01	ci right 5.415851e-01	k: 367472	n:680000
KS ci ratio: 1.260342e-01	ci left: 1.331039e-03	ci right 1.511486e-03	k: 965	n:680000
SRA1   680000 perm   284 sec   (2395 perm/sec)   p_kst 1.419118e-03   p_cons 5.404000e-01   p_joint 4.502941e-03

Joint ci ratio: 7.012203e-02	ci left: 4.350554e-03	ci right 4.668121e-03	k: 3110	n:690000
Cons ci ratio: 4.350467e-03	ci left: 5.394029e-01	ci right 5.417561e-01	k: 373000	n:690000
KS ci ratio: 1.252588e-01	ci left: 1.328593e-03	ci right 1.507519e-03	k: 977	n:690000
SRA1   690000 perm   291 sec   (2375 perm/sec)   p_kst 1.415942e-03   p_cons 5.405797e-01   p_joint 4.507246e-03

Joint ci ratio: 6.948774e-02	ci left: 4.368411e-03	ci right 4.684282e-03	k: 3167	n:700000
Cons ci ratio: 4.319788e-03	ci left: 5.393531e-01	ci right 5.416894e-01	k: 378365	n:700000
KS ci ratio: 1.241839e-01	ci left: 1.333142e-03	ci right 1.511025e-03	k: 994	n:700000
SRA1   700000 perm   297 sec   (2354 perm/sec)   p_kst 1.420000e-03   p_cons 5.405214e-01   p_joint 4.524286e-03

Joint ci ratio: 6.828784e-02	ci left: 4.461921e-03	ci right 4.778761e-03	k: 3279	n:710000
Cons ci ratio: 4.289407e-03	ci left: 5.393442e-01	ci right 5.416640e-01	k: 383758	n:710000
KS ci ratio: 1.231972e-01	ci left: 1.336203e-03	ci right 1.512975e-03	k: 1010	n:710000
SRA1   710000 perm   304 sec   (2333 perm/sec)   p_kst 1.422535e-03   p_cons 5.405042e-01   p_joint 4.618310e-03

Joint ci ratio: 6.855298e-02	ci left: 4.365814e-03	ci right 4.677082e-03	k: 3254	n:720000
Cons ci ratio: 4.259540e-03	ci left: 5.393494e-01	ci right 5.416530e-01	k: 389161	n:720000
KS ci ratio: 1.227132e-01	ci left: 1.328414e-03	ci right 1.503415e-03	k: 1018	n:720000
SRA1   720000 perm   311 sec   (2314 perm/sec)   p_kst 1.413889e-03   p_cons 5.405014e-01   p_joint 4.519444e-03

Joint ci ratio: 6.814624e-02	ci left: 4.358520e-03	ci right 4.667350e-03	k: 3293	n:730000
Cons ci ratio: 4.230405e-03	ci left: 5.393409e-01	ci right 5.416287e-01	k: 394554	n:730000
KS ci ratio: 1.218198e-01	ci left: 1.330136e-03	ci right 1.503996e-03	k: 1033	n:730000
SRA1   730000 perm   318 sec   (2296 perm/sec)   p_kst 1.415068e-03   p_cons 5.404849e-01   p_joint 4.510959e-03

Joint ci ratio: 6.774666e-02	ci left: 4.351427e-03	ci right 4.657877e-03	k: 3332	n:740000
Cons ci ratio: 4.201596e-03	ci left: 5.393637e-01	ci right 5.416360e-01	k: 399970	n:740000
KS ci ratio: 1.211191e-01	ci left: 1.327884e-03	ci right 1.500381e-03	k: 1045	n:740000
SRA1   740000 perm   325 sec   (2278 perm/sec)   p_kst 1.412162e-03   p_cons 5.405000e-01   p_joint 4.502703e-03

Joint ci ratio: 6.737409e-02	ci left: 4.341908e-03	ci right 4.645939e-03	k: 3369	n:750000
Cons ci ratio: 4.172932e-03	ci left: 5.394380e-01	ci right 5.416950e-01	k: 405425	n:750000
KS ci ratio: 1.205446e-01	ci left: 1.323109e-03	ci right 1.494112e-03	k: 1055	n:750000
SRA1   750000 perm   332 sec   (2259 perm/sec)   p_kst 1.406667e-03   p_cons 5.405667e-01   p_joint 4.492000e-03

Joint ci ratio: 6.683050e-02	ci left: 4.355932e-03	ci right 4.658390e-03	k: 3424	n:760000
Cons ci ratio: 4.145603e-03	ci left: 5.394196e-01	ci right 5.416617e-01	k: 410811	n:760000
KS ci ratio: 1.194742e-01	ci left: 1.329950e-03	ci right 1.500202e-03	k: 1074	n:760000
SRA1   760000 perm   339 sec   (2241 perm/sec)   p_kst 1.413158e-03   p_cons 5.405408e-01   p_joint 4.505263e-03

Joint ci ratio: 6.640536e-02	ci left: 4.355553e-03	ci right 4.655986e-03	k: 3468	n:770000
Cons ci ratio: 4.117750e-03	ci left: 5.395290e-01	ci right 5.417564e-01	k: 416295	n:770000
KS ci ratio: 1.187038e-01	ci left: 1.330318e-03	ci right 1.499443e-03	k: 1088	n:770000
SRA1   770000 perm   346 sec   (2224 perm/sec)   p_kst 1.412987e-03   p_cons 5.406429e-01   p_joint 4.503896e-03

Joint ci ratio: 6.593170e-02	ci left: 4.362755e-03	ci right 4.661456e-03	k: 3518	n:780000
Cons ci ratio: 4.091918e-03	ci left: 5.394574e-01	ci right 5.416705e-01	k: 421640	n:780000
KS ci ratio: 1.180553e-01	ci left: 1.328192e-03	ci right 1.496059e-03	k: 1100	n:780000
SRA1   780000 perm   354 sec   (2206 perm/sec)   p_kst 1.410256e-03   p_cons 5.405641e-01   p_joint 4.510256e-03

Joint ci ratio: 6.539445e-02	ci left: 4.379744e-03	ci right 4.677072e-03	k: 3576	n:790000
Cons ci ratio: 4.066161e-03	ci left: 5.394370e-01	ci right 5.416361e-01	k: 427024	n:790000
KS ci ratio: 1.171541e-01	ci left: 1.332265e-03	ci right 1.499273e-03	k: 1117	n:790000
SRA1   790000 perm   361 sec   (2190 perm/sec)   p_kst 1.413924e-03   p_cons 5.405367e-01   p_joint 4.526582e-03

Joint ci ratio: 6.498696e-02	ci left: 4.380330e-03	ci right 4.675775e-03	k: 3621	n:800000
Cons ci ratio: 4.040468e-03	ci left: 5.394684e-01	ci right 5.416538e-01	k: 432449	n:800000
KS ci ratio: 1.165822e-01	ci left: 1.328960e-03	ci right 1.494684e-03	k: 1128	n:800000
SRA1   800000 perm   369 sec   (2171 perm/sec)   p_kst 1.410000e-03   p_cons 5.405612e-01   p_joint 4.526250e-03

Joint ci ratio: 6.460469e-02	ci left: 4.378478e-03	ci right 4.671996e-03	k: 3664	n:810000
Cons ci ratio: 4.015995e-03	ci left: 5.394078e-01	ci right 5.415796e-01	k: 437800	n:810000
KS ci ratio: 1.160696e-01	ci left: 1.324539e-03	ci right 1.488936e-03	k: 1138	n:810000
SRA1   810000 perm   376 sec   (2155 perm/sec)   p_kst 1.404938e-03   p_cons 5.404938e-01   p_joint 4.523457e-03

Joint ci ratio: 6.430754e-02	ci left: 4.365876e-03	ci right 4.657153e-03	k: 3698	n:820000
Cons ci ratio: 3.991422e-03	ci left: 5.394157e-01	ci right 5.415742e-01	k: 443206	n:820000
KS ci ratio: 1.155133e-01	ci left: 1.321412e-03	ci right 1.484582e-03	k: 1149	n:820000
SRA1   820000 perm   383 sec   (2139 perm/sec)   p_kst 1.401220e-03   p_cons 5.404951e-01   p_joint 4.509756e-03

Joint ci ratio: 6.402306e-02	ci left: 4.352395e-03	ci right 4.641441e-03	k: 3731	n:830000
Cons ci ratio: 3.967410e-03	ci left: 5.394090e-01	ci right 5.415545e-01	k: 448600	n:830000
KS ci ratio: 1.148660e-01	ci left: 1.320703e-03	ci right 1.482809e-03	k: 1162	n:830000
SRA1   830000 perm   391 sec   (2123 perm/sec)   p_kst 1.400000e-03   p_cons 5.404819e-01   p_joint 4.495181e-03

Joint ci ratio: 6.369984e-02	ci left: 4.345096e-03	ci right 4.632147e-03	k: 3769	n:840000
Cons ci ratio: 3.943202e-03	ci left: 5.394812e-01	ci right 5.416138e-01	k: 454060	n:840000
KS ci ratio: 1.143756e-01	ci left: 1.316544e-03	ci right 1.477402e-03	k: 1172	n:840000
SRA1   840000 perm   399 sec   (2107 perm/sec)   p_kst 1.395238e-03   p_cons 5.405476e-01   p_joint 4.486905e-03

Joint ci ratio: 6.341494e-02	ci left: 4.333341e-03	ci right 4.618287e-03	k: 3803	n:850000
Cons ci ratio: 3.919840e-03	ci left: 5.394998e-01	ci right 5.416199e-01	k: 459476	n:850000
KS ci ratio: 1.138432e-01	ci left: 1.313627e-03	ci right 1.473332e-03	k: 1183	n:850000
SRA1   850000 perm   406 sec   (2092 perm/sec)   p_kst 1.391765e-03   p_cons 5.405600e-01   p_joint 4.474118e-03

Joint ci ratio: 6.308431e-02	ci left: 4.328729e-03	ci right 4.611834e-03	k: 3843	n:860000
Cons ci ratio: 3.897719e-03	ci left: 5.394123e-01	ci right 5.415200e-01	k: 464801	n:860000
KS ci ratio: 1.134133e-01	ci left: 1.308519e-03	ci right 1.466963e-03	k: 1192	n:860000
SRA1   860000 perm   414 sec   (2076 perm/sec)   p_kst 1.386047e-03   p_cons 5.404663e-01   p_joint 4.468605e-03

Joint ci ratio: 6.269397e-02	ci left: 4.333279e-03	ci right 4.614864e-03	k: 3891	n:870000
Cons ci ratio: 3.876013e-03	ci left: 5.393210e-01	ci right 5.414166e-01	k: 470121	n:870000
KS ci ratio: 1.126136e-01	ci left: 1.312467e-03	ci right 1.470193e-03	k: 1209	n:870000
SRA1   870000 perm   422 sec   (2062 perm/sec)   p_kst 1.389655e-03   p_cons 5.403690e-01   p_joint 4.472414e-03

Joint ci ratio: 1.070446e-01	ci left: 1.440124e-03	ci right 1.604094e-03	k: 1338	n:880000
Cons ci ratio: 3.853872e-03	ci left: 5.393342e-01	ci right 5.414178e-01	k: 475531	n:880000
KS ci ratio: 1.122436e-01	ci left: 1.306388e-03	ci right 1.462833e-03	k: 1217	n:880000
SRA1   880000 perm   430 sec   (2047 perm/sec)   p_kst 1.382955e-03   p_cons 5.403761e-01   p_joint 1.520455e-03

Joint ci ratio: 6.206758e-02	ci left: 4.323280e-03	ci right 4.601308e-03	k: 3970	n:890000
Cons ci ratio: 3.832045e-03	ci left: 5.393549e-01	ci right 5.414268e-01	k: 480948	n:890000
KS ci ratio: 1.116948e-01	ci left: 1.304815e-03	ci right 1.460257e-03	k: 1229	n:890000
SRA1   890000 perm   438 sec   (2031 perm/sec)   p_kst 1.380899e-03   p_cons 5.403910e-01   p_joint 4.460674e-03

Joint ci ratio: 1.058266e-01	ci left: 1.441649e-03	ci right 1.603809e-03	k: 1369	n:900000
Cons ci ratio: 3.810346e-03	ci left: 5.394064e-01	ci right 5.414667e-01	k: 486393	n:900000
KS ci ratio: 1.108861e-01	ci left: 1.309760e-03	ci right 1.464589e-03	k: 1247	n:900000
SRA1   900000 perm   446 sec   (2016 perm/sec)   p_kst 1.385556e-03   p_cons 5.404367e-01   p_joint 1.521111e-03

Joint ci ratio: 1.055577e-01	ci left: 1.433295e-03	ci right 1.594080e-03	k: 1376	n:910000
Cons ci ratio: 3.789196e-03	ci left: 5.394325e-01	ci right 5.414815e-01	k: 491816	n:910000
KS ci ratio: 1.106210e-01	ci left: 1.301778e-03	ci right 1.455271e-03	k: 1253	n:910000
SRA1   910000 perm   454 sec   (2002 perm/sec)   p_kst 1.376923e-03   p_cons 5.404571e-01   p_joint 1.512088e-03

Joint ci ratio: 1.047616e-01	ci left: 1.439942e-03	ci right 1.600179e-03	k: 1397	n:920000
Cons ci ratio: 3.768560e-03	ci left: 5.394364e-01	ci right 5.414742e-01	k: 497219	n:920000
KS ci ratio: 1.098353e-01	ci left: 1.306654e-03	ci right 1.459557e-03	k: 1271	n:920000
SRA1   920000 perm   463 sec   (1988 perm/sec)   p_kst 1.381522e-03   p_cons 5.404554e-01   p_joint 1.518478e-03

Joint ci ratio: 1.043892e-01	ci left: 1.434930e-03	ci right 1.594007e-03	k: 1407	n:930000
Cons ci ratio: 3.748492e-03	ci left: 5.394091e-01	ci right 5.414359e-01	k: 502593	n:930000
KS ci ratio: 1.094490e-01	ci left: 1.302016e-03	ci right 1.453805e-03	k: 1280	n:930000
SRA1   930000 perm   471 sec   (1974 perm/sec)   p_kst 1.376344e-03   p_cons 5.404226e-01   p_joint 1.512903e-03

Joint ci ratio: 1.039107e-01	ci left: 1.433134e-03	ci right 1.591240e-03	k: 1420	n:940000
Cons ci ratio: 3.728478e-03	ci left: 5.394174e-01	ci right 5.414334e-01	k: 508000	n:940000
KS ci ratio: 1.089401e-01	ci left: 1.300582e-03	ci right 1.451454e-03	k: 1292	n:940000
SRA1   940000 perm   480 sec   (1960 perm/sec)   p_kst 1.374468e-03   p_cons 5.404255e-01   p_joint 1.510638e-03

Joint ci ratio: 1.034749e-01	ci left: 1.430352e-03	ci right 1.587449e-03	k: 1432	n:950000
Cons ci ratio: 3.708396e-03	ci left: 5.394772e-01	ci right 5.414825e-01	k: 513456	n:950000
KS ci ratio: 1.084798e-01	ci left: 1.298155e-03	ci right 1.448069e-03	k: 1303	n:950000
SRA1   950000 perm   488 sec   (1946 perm/sec)   p_kst 1.371579e-03   p_cons 5.404800e-01   p_joint 1.507368e-03

Joint ci ratio: 1.030445e-01	ci left: 1.427630e-03	ci right 1.583736e-03	k: 1444	n:960000
Cons ci ratio: 3.689091e-03	ci left: 5.394743e-01	ci right 5.414692e-01	k: 518853	n:960000
KS ci ratio: 1.079842e-01	ci left: 1.296794e-03	ci right 1.445824e-03	k: 1315	n:960000
SRA1   960000 perm   497 sec   (1932 perm/sec)   p_kst 1.369792e-03   p_cons 5.404719e-01   p_joint 1.504167e-03

Joint ci ratio: 1.026901e-01	ci left: 1.422956e-03	ci right 1.577983e-03	k: 1454	n:970000
Cons ci ratio: 3.669787e-03	ci left: 5.395117e-01	ci right 5.414963e-01	k: 524289	n:970000
KS ci ratio: 1.075764e-01	ci left: 1.293457e-03	ci right 1.441505e-03	k: 1325	n:970000
SRA1   970000 perm   506 sec   (1919 perm/sec)   p_kst 1.365979e-03   p_cons 5.405041e-01   p_joint 1.498969e-03

Joint ci ratio: 1.021996e-01	ci left: 1.422356e-03	ci right 1.576533e-03	k: 1468	n:980000
Cons ci ratio: 3.651226e-03	ci left: 5.394882e-01	ci right 5.414626e-01	k: 529666	n:980000
KS ci ratio: 1.070530e-01	ci left: 1.293167e-03	ci right 1.440417e-03	k: 1338	n:980000
SRA1   980000 perm   514 sec   (1906 perm/sec)   p_kst 1.365306e-03   p_cons 5.404755e-01   p_joint 1.497959e-03

Joint ci ratio: 1.017161e-01	ci left: 1.421769e-03	ci right 1.575110e-03	k: 1482	n:990000
Cons ci ratio: 3.632582e-03	ci left: 5.395147e-01	ci right 5.414790e-01	k: 535092	n:990000
KS ci ratio: 1.065371e-01	ci left: 1.292886e-03	ci right 1.439350e-03	k: 1351	n:990000
SRA1   990000 perm   523 sec   (1894 perm/sec)   p_kst 1.364646e-03   p_cons 5.404970e-01   p_joint 1.496970e-03

Joint ci ratio: 1.010368e-01	ci left: 1.427045e-03	ci right 1.579866e-03	k: 1502	n:1000000
Cons ci ratio: 3.614228e-03	ci left: 5.395396e-01	ci right 5.414941e-01	k: 540517	n:1000000
KS ci ratio: 1.059509e-01	ci left: 1.294558e-03	ci right 1.440355e-03	k: 1366	n:1000000
SRA1   1000000 perm   532 sec   (1879 perm/sec)   p_kst 1.366000e-03   p_cons 5.405170e-01   p_joint 1.502000e-03

Joint ci ratio: 1.005033e-01	ci left: 1.428358e-03	ci right 1.580464e-03	k: 1518	n:1010000
Cons ci ratio: 3.596536e-03	ci left: 5.395106e-01	ci right 5.414555e-01	k: 545888	n:1010000
KS ci ratio: 1.053743e-01	ci left: 1.296200e-03	ci right 1.441337e-03	k: 1381	n:1010000
SRA1   1010000 perm   541 sec   (1865 perm/sec)   p_kst 1.367327e-03   p_cons 5.404832e-01   p_joint 1.502970e-03

Joint ci ratio: 9.991288e-02	ci left: 1.431559e-03	ci right 1.583059e-03	k: 1536	n:1020000
Cons ci ratio: 3.578953e-03	ci left: 5.395028e-01	ci right 5.414381e-01	k: 551280	n:1020000
KS ci ratio: 1.048069e-01	ci left: 1.297811e-03	ci right 1.442299e-03	k: 1396	n:1020000
SRA1   1020000 perm   551 sec   (1852 perm/sec)   p_kst 1.368627e-03   p_cons 5.404706e-01   p_joint 1.505882e-03

Joint ci ratio: 9.955745e-02	ci left: 1.428074e-03	ci right 1.578635e-03	k: 1547	n:1030000
Cons ci ratio: 3.561842e-03	ci left: 5.394651e-01	ci right 5.413910e-01	k: 556641	n:1030000
KS ci ratio: 1.044340e-01	ci left: 1.294666e-03	ci right 1.438259e-03	k: 1406	n:1030000
SRA1   1030000 perm   560 sec   (1839 perm/sec)   p_kst 1.365049e-03   p_cons 5.404282e-01   p_joint 1.501942e-03

Joint ci ratio: 9.895185e-02	ci left: 1.432158e-03	ci right 1.582179e-03	k: 1566	n:1040000
Cons ci ratio: 3.544191e-03	ci left: 5.395378e-01	ci right 5.414543e-01	k: 562116	n:1040000
KS ci ratio: 1.038086e-01	ci left: 1.298138e-03	ci right 1.441201e-03	k: 1423	n:1040000
SRA1   1040000 perm   569 sec   (1828 perm/sec)   p_kst 1.368269e-03   p_cons 5.404962e-01   p_joint 1.505769e-03

Joint ci ratio: 9.848162e-02	ci left: 1.432452e-03	ci right 1.581748e-03	k: 1581	n:1050000
Cons ci ratio: 3.526421e-03	ci left: 5.396624e-01	ci right 5.415698e-01	k: 567647	n:1050000
KS ci ratio: 1.032661e-01	ci left: 1.299690e-03	ci right 1.442131e-03	k: 1438	n:1050000
SRA1   1050000 perm   578 sec   (1816 perm/sec)   p_kst 1.369524e-03   p_cons 5.406162e-01   p_joint 1.505714e-03

Joint ci ratio: 9.804879e-02	ci left: 1.431821e-03	ci right 1.580358e-03	k: 1595	n:1060000
Cons ci ratio: 3.509809e-03	ci left: 5.396583e-01	ci right 5.415566e-01	k: 573044	n:1060000
KS ci ratio: 1.028028e-01	ci left: 1.299377e-03	ci right 1.441106e-03	k: 1451	n:1060000
SRA1   1060000 perm   587 sec   (1805 perm/sec)   p_kst 1.368868e-03   p_cons 5.406075e-01   p_joint 1.504717e-03

Joint ci ratio: 9.737960e-02	ci left: 1.438498e-03	ci right 1.586651e-03	k: 1617	n:1070000
Cons ci ratio: 3.493238e-03	ci left: 5.396813e-01	ci right 5.415708e-01	k: 578470	n:1070000
KS ci ratio: 1.020323e-01	ci left: 1.307268e-03	ci right 1.448724e-03	k: 1473	n:1070000
SRA1   1070000 perm   597 sec   (1793 perm/sec)   p_kst 1.376636e-03   p_cons 5.406262e-01   p_joint 1.511215e-03

Joint ci ratio: 9.699084e-02	ci left: 1.436923e-03	ci right 1.584290e-03	k: 1630	n:1080000
Cons ci ratio: 3.477283e-03	ci left: 5.396494e-01	ci right 5.415300e-01	k: 583837	n:1080000
KS ci ratio: 1.016196e-01	ci left: 1.305992e-03	ci right 1.446704e-03	k: 1485	n:1080000
SRA1   1080000 perm   606 sec   (1781 perm/sec)   p_kst 1.375000e-03   p_cons 5.405898e-01   p_joint 1.509259e-03

Joint ci ratio: 9.637214e-02	ci left: 1.442541e-03	ci right 1.589487e-03	k: 1651	n:1090000
Cons ci ratio: 3.461391e-03	ci left: 5.396400e-01	ci right 5.415121e-01	k: 589228	n:1090000
KS ci ratio: 1.009423e-01	ci left: 1.311894e-03	ci right 1.452245e-03	k: 1505	n:1090000
SRA1   1090000 perm   616 sec   (1769 perm/sec)   p_kst 1.380734e-03   p_cons 5.405761e-01   p_joint 1.514679e-03

Joint ci ratio: 9.579380e-02	ci left: 1.447172e-03	ci right 1.593655e-03	k: 1671	n:1100000
Cons ci ratio: 3.446011e-03	ci left: 5.395881e-01	ci right 5.414516e-01	k: 594572	n:1100000
KS ci ratio: 1.003442e-01	ci left: 1.315920e-03	ci right 1.455818e-03	k: 1523	n:1100000
SRA1   1100000 perm   626 sec   (1757 perm/sec)   p_kst 1.384545e-03   p_cons 5.405200e-01   p_joint 1.519091e-03

Joint ci ratio: 9.545202e-02	ci left: 1.444686e-03	ci right 1.590367e-03	k: 1683	n:1110000
Cons ci ratio: 3.430684e-03	ci left: 5.395588e-01	ci right 5.414139e-01	k: 599940	n:1110000
KS ci ratio: 9.998416e-02	ci left: 1.313726e-03	ci right 1.452860e-03	k: 1534	n:1110000
SRA1   1110000 perm   636 sec   (1745 perm/sec)   p_kst 1.381982e-03   p_cons 5.404865e-01   p_joint 1.516216e-03

Outputting figure to mutsig2_images.part000000000166/SRA1.2_731_1110000_0.001382_0.54049_0.0015162.png
                gene_name: SRA1
               theta_stop: 0.100 
                    nperm: 1110000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0016 

Current progress: 85 percent done.
SRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
Cons ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
KS ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
SRC   10000 perm   2 sec   (6594 perm/sec)   p_kst 2.021000e-01   p_cons 4.874000e-01   p_joint 3.782000e-01

Outputting figure to mutsig2_images.part000000000166/SRC.2_1655_10000_0.2021_0.4874_0.3782.png
                gene_name: SRC
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 87 percent done.
SRCRB4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
KS ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
SRCRB4D   10000 perm   2 sec   (6313 perm/sec)   p_kst 9.845000e-01   p_cons 6.012000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRCRB4D.2_1768_10000_0.9845_0.6012_1.png
                gene_name: SRCRB4D
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
SREBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
Cons ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
KS ci ratio: 3.948518e-02	ci left: 4.864527e-01	ci right 5.061494e-01	k: 4963	n:10000
SREBF1   10000 perm   2 sec   (5373 perm/sec)   p_kst 4.963000e-01   p_cons 7.732000e-01   p_joint 9.517000e-01

Outputting figure to mutsig2_images.part000000000166/SREBF1.2_3614_10000_0.4963_0.7732_0.9517.png
                gene_name: SREBF1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 90 percent done.
SREBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
Cons ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KS ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
SREBF2   10000 perm   2 sec   (5529 perm/sec)   p_kst 2.392000e-01   p_cons 4.220000e-01   p_joint 5.260000e-01

Outputting figure to mutsig2_images.part000000000166/SREBF2.2_3502_10000_0.2392_0.422_0.526.png
                gene_name: SREBF2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 92 percent done.
SRM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.452240e-03	ci left: 9.904966e-01	ci right 9.940075e-01	k: 9924	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
SRM   10000 perm   1 sec   (6796 perm/sec)   p_kst 5.883000e-01   p_cons 2.123000e-01   p_joint 9.924000e-01

Outputting figure to mutsig2_images.part000000000166/SRM.2_941_10000_0.5883_0.2123_0.9924.png
                gene_name: SRM
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
SRP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
Cons ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
SRP54   10000 perm   2 sec   (6202 perm/sec)   p_kst 4.922000e-01   p_cons 7.201000e-01   p_joint 9.232000e-01

Outputting figure to mutsig2_images.part000000000166/SRP54.2_1575_10000_0.4922_0.7201_0.9232.png
                gene_name: SRP54
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
SRP68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
SRP68   10000 perm   2 sec   (6055 perm/sec)   p_kst 2.810000e-02   p_cons 4.521000e-01   p_joint 8.460000e-02

Joint ci ratio: 5.675206e-02	ci left: 1.871053e-01	ci right 1.980842e-01	k: 3851	n:20000
Cons ci ratio: 3.041038e-02	ci left: 4.468323e-01	ci right 4.606811e-01	k: 9075	n:20000
KS ci ratio: 1.621233e-01	ci left: 2.609357e-02	ci right 3.074488e-02	k: 567	n:20000
SRP68   20000 perm   4 sec   (5411 perm/sec)   p_kst 2.835000e-02   p_cons 4.537500e-01   p_joint 1.925500e-01

Joint ci ratio: 3.712268e-02	ci left: 2.659098e-01	ci right 2.760013e-01	k: 8128	n:30000
Cons ci ratio: 2.483317e-02	ci left: 4.480544e-01	ci right 4.593545e-01	k: 13611	n:30000
KS ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
SRP68   30000 perm   6 sec   (5138 perm/sec)   p_kst 2.760000e-02   p_cons 4.537000e-01   p_joint 2.709333e-01

Joint ci ratio: 2.226968e-02	ci left: 4.316071e-01	ci right 4.413522e-01	k: 17459	n:40000
Cons ci ratio: 2.148587e-02	ci left: 4.492867e-01	ci right 4.590700e-01	k: 18167	n:40000
KS ci ratio: 1.165546e-01	ci left: 2.589497e-02	ci right 2.912412e-02	k: 1099	n:40000
SRP68   40000 perm   8 sec   (4965 perm/sec)   p_kst 2.747500e-02   p_cons 4.541750e-01   p_joint 4.364750e-01

Joint ci ratio: 6.219332e-03	ci left: 8.854255e-01	ci right 8.909693e-01	k: 44411	n:50000
Cons ci ratio: 1.931236e-02	ci left: 4.473708e-01	ci right 4.561148e-01	k: 22587	n:50000
KS ci ratio: 1.039007e-01	ci left: 2.624000e-02	ci right 2.913518e-02	k: 1383	n:50000
SRP68   50000 perm   10 sec   (4809 perm/sec)   p_kst 2.766000e-02   p_cons 4.517400e-01   p_joint 8.882200e-01

Joint ci ratio: 9.504840e-02	ci left: 2.625487e-02	ci right 2.889109e-02	k: 1653	n:60000
Cons ci ratio: 1.758324e-02	ci left: 4.490609e-01	ci right 4.570436e-01	k: 27183	n:60000
KS ci ratio: 9.504840e-02	ci left: 2.625487e-02	ci right 2.889109e-02	k: 1653	n:60000
SRP68   60000 perm   13 sec   (4689 perm/sec)   p_kst 2.755000e-02   p_cons 4.530500e-01   p_joint 2.755000e-02

Outputting figure to mutsig2_images.part000000000166/SRP68.2_1948_60000_0.02755_0.45305_0.02755.png
                gene_name: SRP68
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 97 percent done.
SRP72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
SRP72   10000 perm   2 sec   (6162 perm/sec)   p_kst 1.576000e-01   p_cons 4.923000e-01   p_joint 2.423000e-01

Outputting figure to mutsig2_images.part000000000166/SRP72.2_2092_10000_0.1576_0.4923_0.2423.png
                gene_name: SRP72
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 98 percent done.
SRPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
Cons ci ratio: 1.222656e-02	ci left: 9.056599e-01	ci right 9.168991e-01	k: 9114	n:10000
KS ci ratio: 5.569174e-02	ci left: 3.219758e-01	ci right 3.405226e-01	k: 3312	n:10000
SRPK3   10000 perm   2 sec   (6123 perm/sec)   p_kst 3.312000e-01   p_cons 9.114000e-01   p_joint 6.691000e-01

Outputting figure to mutsig2_images.part000000000166/SRPK3.2_1764_10000_0.3312_0.9114_0.6691.png
                gene_name: SRPK3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000166
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 166 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 4422581: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000167> was used as the working directory.
Started at Wed Oct 24 18:08:52 2012
Results reported at Wed Oct 24 21:37:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000167.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000167.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 167  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000167.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13463.62 sec.
    Max Memory :      5321 MB
    Max Swap   :      7699 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
167
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 167
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 167: processing genes 15019 - 15108
Calculating significance of each gene.
Using projection method.
15019	SRPX	4.467824e-01
15020	SRPX2	1
15021	SRR	1
15022	SRRD	8.229124e-01
15023	SRRM1	1
15024	SRRM2	9.230553e-01
15025	SRRM3	3.027976e-01
15026	SRRM4	9.195801e-01
15027	SRRT	9.809208e-01
15028	SRXN1	1
15029	SRY	1
15030	SS18	9.183753e-01
15031	SS18L1	1
15032	SS18L2	1
15033	SSB	1
15034	SSBP1	1
15035	SSBP2	8.156612e-01
15036	SSBP3	8.636768e-01
15037	SSBP4	1
15038	SSFA2	8.289189e-01
15039	SSH1	8.542521e-01
15040	SSH2	9.957199e-01
15041	SSH3	9.082275e-01
15042	SSNA1	1
15043	SSPN	7.881973e-02
15044	SSPO	1
15045	SSR1	3.249693e-01
15046	SSR2	7.339955e-01
15047	SSR3	1
15048	SSR4	1.918666e-01
15049	SSRP1	1
15050	SSSCA1	1
15051	SST	1
15052	SSTR1	3.409941e-01
15053	SSTR2	1
15054	SSTR3	7.184331e-01
15055	SSTR4	1
15056	SSTR5	7.002541e-01
15057	SSU72	2.124346e-01
15058	SSX1	6.990857e-01
15059	SSX2IP	9.697951e-01
15060	SSX3	1.296100e-01
15061	SSX5	2.382334e-02
15062	SSX7	2.537163e-02
15063	ST13	1
15064	ST14	8.784300e-01
15065	ST18	1
15066	ST20	1
15067	ST3GAL1	7.923826e-01
15068	ST3GAL2	1
15069	ST3GAL3	8.595375e-01
15070	ST3GAL4	6.547441e-01
15071	ST3GAL5	1
15072	ST3GAL6	2.251712e-01
15073	ST5	9.954653e-01
15074	ST6GAL1	1
15075	ST6GAL2	7.311884e-01
15076	ST6GALNAC1	9.190610e-01
15077	ST6GALNAC2	1
15078	ST6GALNAC3	7.702171e-04
15079	ST6GALNAC4	8.603649e-01
15080	ST6GALNAC5	2.256249e-01
15081	ST6GALNAC6	7.388698e-01
15082	ST7	3.895742e-01
15083	ST7L	9.288867e-01
15084	ST8SIA1	7.326897e-01
15085	ST8SIA2	7.027345e-01
15086	ST8SIA3	3.582857e-01
15087	ST8SIA4	1
15088	ST8SIA5	7.972817e-01
15089	ST8SIA6	2.263233e-01
15090	STAB1	9.999999e-01
15091	STAB2	1
15092	STAC	1.050396e-02
15093	STAC2	1
15094	STAC3	2.938410e-01
15095	STAG1	1
15096	STAG2	6.938409e-01
15097	STAG3	7.133387e-01
15098	STAG3L2	4.610136e-01
15099	STAG3L4	2.615801e-01
15100	STAM	1.371767e-01
15101	STAM2	5.459862e-01
15102	STAMBP	1
15103	STAMBPL1	1
15104	STAP1	1.311808e-01
15105	STAP2	8.279865e-01
15106	STAR	1
15107	STARD10	7.983810e-01
15108	STARD13	9.296471e-01
Done

Running MutSig 2:
Scatter job 167: processing genes 15019 - 15108
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SSPO
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
SSPO   10000 perm   5 sec   (1834 perm/sec)   p_kst 2.703000e-01   p_cons 6.391000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000167/SSPO.27_15875_10000_0.2703_0.6391_0.3909.png
                gene_name: SSPO
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
STAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
Cons ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
KS ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
STAB2   10000 perm   4 sec   (2759 perm/sec)   p_kst 1.727000e-01   p_cons 6.839000e-01   p_joint 3.767000e-01

Outputting figure to mutsig2_images.part000000000167/STAB2.18_7932_10000_0.1727_0.6839_0.3767.png
                gene_name: STAB2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 4 percent done.
SRRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
SRRM2   10000 perm   3 sec   (2896 perm/sec)   p_kst 6.040000e-02   p_cons 7.256000e-01   p_joint 1.284000e-01

Joint ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
Cons ci ratio: 1.732380e-02	ci left: 7.128147e-01	ci right 7.253216e-01	k: 14382	n:20000
KS ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
SRRM2   20000 perm   7 sec   (2670 perm/sec)   p_kst 5.680000e-02   p_cons 7.191000e-01   p_joint 8.800000e-02

Joint ci ratio: 6.107548e-02	ci left: 1.170337e-01	ci right 1.244399e-01	k: 3621	n:30000
Cons ci ratio: 1.406560e-02	ci left: 7.162555e-01	ci right 7.264349e-01	k: 21641	n:30000
KS ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
SRRM2   30000 perm   11 sec   (2616 perm/sec)   p_kst 5.640000e-02   p_cons 7.213667e-01   p_joint 1.207000e-01

Outputting figure to mutsig2_images.part000000000167/SRRM2.16_8315_30000_0.0564_0.72137_0.1207.png
                gene_name: SRRM2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 6 percent done.
ST18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
ST18   10000 perm   2 sec   (4185 perm/sec)   p_kst 8.503000e-01   p_cons 5.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST18.16_3224_10000_0.8503_0.5474_1.png
                gene_name: ST18
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
ST6GAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
Cons ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
ST6GAL2   10000 perm   2 sec   (5138 perm/sec)   p_kst 9.431000e-01   p_cons 9.340000e-02   p_joint 3.249000e-01

Joint ci ratio: 3.955396e-02	ci left: 3.227870e-01	ci right 3.358626e-01	k: 6586	n:20000
Cons ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
KS ci ratio: 8.230864e-03	ci left: 9.151325e-01	ci right 9.227451e-01	k: 18380	n:20000
ST6GAL2   20000 perm   4 sec   (4652 perm/sec)   p_kst 9.190000e-01   p_cons 9.485000e-02   p_joint 3.293000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GAL2.16_1697_20000_0.919_0.09485_0.3293.png
                gene_name: ST6GAL2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 10 percent done.
STAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
Cons ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
KS ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
STAG3   10000 perm   2 sec   (4316 perm/sec)   p_kst 3.927000e-01   p_cons 2.248000e-01   p_joint 2.922000e-01

Outputting figure to mutsig2_images.part000000000167/STAG3.11_3810_10000_0.3927_0.2248_0.2922.png
                gene_name: STAG3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 12 percent done.
STAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
STAB1   10000 perm   3 sec   (3240 perm/sec)   p_kst 9.095000e-01   p_cons 5.594000e-01   p_joint 8.917000e-01

Outputting figure to mutsig2_images.part000000000167/STAB1.10_7989_10000_0.9095_0.5594_0.8917.png
                gene_name: STAB1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 13 percent done.
ST8SIA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
Cons ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
KS ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
ST8SIA6   10000 perm   2 sec   (5302 perm/sec)   p_kst 1.567000e-01   p_cons 3.309000e-01   p_joint 2.294000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA6.9_1229_10000_0.1567_0.3309_0.2294.png
                gene_name: ST8SIA6
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 15 percent done.
STARD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
STARD13   10000 perm   2 sec   (4684 perm/sec)   p_kst 7.455000e-01   p_cons 5.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/STARD13.9_3547_10000_0.7455_0.5794_1.png
                gene_name: STARD13
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ST6GALNAC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
Cons ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
KS ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
ST6GALNAC3   10000 perm   2 sec   (5419 perm/sec)   p_kst 5.548000e-01   p_cons 3.756000e-01   p_joint 6.410000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC3.8_952_10000_0.5548_0.3756_0.641.png
                gene_name: ST6GALNAC3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 19 percent done.
SSFA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
Cons ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
KS ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
SSFA2   10000 perm   2 sec   (4405 perm/sec)   p_kst 6.456000e-01   p_cons 9.605000e-01   p_joint 7.593000e-01

Outputting figure to mutsig2_images.part000000000167/SSFA2.7_3948_10000_0.6456_0.9605_0.7593.png
                gene_name: SSFA2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 21 percent done.
STAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
KS ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
STAG2   10000 perm   2 sec   (4218 perm/sec)   p_kst 8.672000e-01   p_cons 6.877000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/STAG2.7_3939_10000_0.8672_0.6877_1.png
                gene_name: STAG2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
SSX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
Cons ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
KS ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
SSX5   10000 perm   2 sec   (6007 perm/sec)   p_kst 4.937000e-01   p_cons 8.798000e-01   p_joint 6.497000e-01

Outputting figure to mutsig2_images.part000000000167/SSX5.6_718_10000_0.4937_0.8798_0.6497.png
                gene_name: SSX5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
STAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
Cons ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
STAC   10000 perm   2 sec   (5354 perm/sec)   p_kst 3.640000e-01   p_cons 1.984000e-01   p_joint 2.855000e-01

Outputting figure to mutsig2_images.part000000000167/STAC.6_1253_10000_0.364_0.1984_0.2855.png
                gene_name: STAC
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 27 percent done.
STAC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
STAC3   10000 perm   2 sec   (5840 perm/sec)   p_kst 1.000000e-04   p_cons 3.240000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.957636e-02	ci left: 3.225383e-01	ci right 3.356114e-01	k: 6581	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
STAC3   20000 perm   4 sec   (5214 perm/sec)   p_kst 1.000000e-04   p_cons 3.290500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.251996e-02	ci left: 3.209616e-01	ci right 3.316054e-01	k: 9788	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
STAC3   30000 perm   6 sec   (4936 perm/sec)   p_kst 6.666667e-05   p_cons 3.262667e-01   p_joint 0

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 2.820319e-02	ci left: 3.210579e-01	ci right 3.302674e-01	k: 13026	n:40000
KS ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
STAC3   40000 perm   8 sec   (4787 perm/sec)   p_kst 1.000000e-04   p_cons 3.256500e-01   p_joint 2.875000e-03

Joint ci ratio: 3.877379e-01	ci left: 1.645615e-03	ci right 2.453950e-03	k: 101	n:50000
Cons ci ratio: 2.534999e-02	ci left: 3.193999e-01	ci right 3.276206e-01	k: 16175	n:50000
KS ci ratio: 1.752972e+00	ci left: 2.179772e-05	ci right 2.048190e-04	k: 4	n:50000
STAC3   50000 perm   11 sec   (4667 perm/sec)   p_kst 8.000000e-05   p_cons 3.235000e-01   p_joint 2.020000e-03

Joint ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
Cons ci ratio: 2.313440e-02	ci left: 3.198900e-01	ci right 3.273937e-01	k: 19418	n:60000
KS ci ratio: 1.481522e+00	ci left: 3.669909e-05	ci right 2.176451e-04	k: 6	n:60000
STAC3   60000 perm   13 sec   (4545 perm/sec)   p_kst 1.000000e-04   p_cons 3.236333e-01   p_joint 6.833333e-04

Joint ci ratio: 6.357308e-01	ci left: 3.721895e-04	ci right 7.284932e-04	k: 37	n:70000
Cons ci ratio: 2.231889e-02	ci left: 3.024590e-01	ci right 3.093000e-01	k: 21411	n:70000
KS ci ratio: 1.385840e+00	ci left: 4.020610e-05	ci right 2.060273e-04	k: 7	n:70000
STAC3   70000 perm   16 sec   (4447 perm/sec)   p_kst 1.000000e-04   p_cons 3.058714e-01   p_joint 5.285714e-04

Joint ci ratio: 5.778027e-01	ci left: 4.103200e-04	ci right 7.525977e-04	k: 45	n:80000
Cons ci ratio: 2.085277e-02	ci left: 3.031814e-01	ci right 3.095827e-01	k: 24510	n:80000
KS ci ratio: 1.239528e+00	ci left: 5.144341e-05	ci right 2.135493e-04	k: 9	n:80000
STAC3   80000 perm   18 sec   (4358 perm/sec)   p_kst 1.125000e-04   p_cons 3.063750e-01   p_joint 5.625000e-04

Joint ci ratio: 5.542146e-01	ci left: 4.028093e-04	ci right 7.197213e-04	k: 49	n:90000
Cons ci ratio: 1.963855e-02	ci left: 3.038321e-01	ci right 3.098692e-01	k: 27616	n:90000
KS ci ratio: 1.239537e+00	ci left: 4.572735e-05	ci right 1.898226e-04	k: 9	n:90000
STAC3   90000 perm   21 sec   (4266 perm/sec)   p_kst 1.000000e-04   p_cons 3.068444e-01   p_joint 5.444444e-04

Joint ci ratio: 5.487671e-01	ci left: 3.711317e-04	ci right 6.591352e-04	k: 50	n:100000
Cons ci ratio: 1.866962e-02	ci left: 3.031046e-01	ci right 3.088267e-01	k: 30596	n:100000
KS ci ratio: 1.181854e+00	ci left: 4.795490e-05	ci right 1.838958e-04	k: 10	n:100000
STAC3   100000 perm   24 sec   (4180 perm/sec)   p_kst 1.000000e-04   p_cons 3.059600e-01   p_joint 5.000000e-04

Joint ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
Cons ci ratio: 1.782089e-02	ci left: 3.027604e-01	ci right 3.082135e-01	k: 33603	n:110000
KS ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
STAC3   110000 perm   27 sec   (4107 perm/sec)   p_kst 1.181818e-04   p_cons 3.054818e-01   p_joint 5.181818e-04

Joint ci ratio: 5.102129e-01	ci left: 3.670351e-04	ci right 6.247762e-04	k: 58	n:120000
Cons ci ratio: 1.707156e-02	ci left: 3.026450e-01	ci right 3.078644e-01	k: 36630	n:120000
KS ci ratio: 1.047599e+00	ci left: 5.768416e-05	ci right 1.852462e-04	k: 13	n:120000
STAC3   120000 perm   30 sec   (4039 perm/sec)   p_kst 1.083333e-04   p_cons 3.052500e-01   p_joint 4.833333e-04

Joint ci ratio: 4.860927e-01	ci left: 3.791569e-04	ci right 6.286231e-04	k: 64	n:130000
Cons ci ratio: 1.639575e-02	ci left: 3.029045e-01	ci right 3.079196e-01	k: 39703	n:130000
KS ci ratio: 1.012077e+00	ci left: 5.887760e-05	ci right 1.806828e-04	k: 14	n:130000
STAC3   130000 perm   33 sec   (3972 perm/sec)   p_kst 1.076923e-04   p_cons 3.054077e-01   p_joint 4.923077e-04

Joint ci ratio: 4.684108e-01	ci left: 3.834919e-04	ci right 6.237014e-04	k: 69	n:140000
Cons ci ratio: 1.581376e-02	ci left: 3.026102e-01	ci right 3.074408e-01	k: 42703	n:140000
KS ci ratio: 9.799405e-01	ci left: 5.996824e-05	ci right 1.767097e-04	k: 15	n:140000
STAC3   140000 perm   36 sec   (3903 perm/sec)   p_kst 1.071429e-04   p_cons 3.050214e-01   p_joint 4.928571e-04

Joint ci ratio: 4.684187e-01	ci left: 3.579245e-04	ci right 5.821239e-04	k: 69	n:150000
Cons ci ratio: 1.527953e-02	ci left: 3.026373e-01	ci right 3.073036e-01	k: 45745	n:150000
KS ci ratio: 9.506826e-01	ci left: 6.097041e-05	ci right 1.732142e-04	k: 16	n:150000
STAC3   150000 perm   39 sec   (3837 perm/sec)   p_kst 1.066667e-04   p_cons 3.049667e-01   p_joint 4.600000e-04

Joint ci ratio: 6.047878e-01	ci left: 1.838955e-04	ci right 3.476162e-04	k: 41	n:160000
Cons ci ratio: 1.480607e-02	ci left: 3.023765e-01	ci right 3.068931e-01	k: 48741	n:160000
KS ci ratio: 9.238980e-01	ci left: 6.189572e-05	ci right 1.701111e-04	k: 17	n:160000
STAC3   160000 perm   42 sec   (3774 perm/sec)   p_kst 1.062500e-04   p_cons 3.046313e-01   p_joint 2.562500e-04

Joint ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
Cons ci ratio: 1.436687e-02	ci left: 3.023598e-01	ci right 3.067410e-01	k: 51773	n:170000
KS ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
STAC3   170000 perm   46 sec   (3713 perm/sec)   p_kst 1.058824e-04   p_cons 3.045471e-01   p_joint 2.588235e-04

Joint ci ratio: 2.438729e-01	ci left: 1.258642e-03	ci right 1.613283e-03	k: 257	n:180000
Cons ci ratio: 1.397134e-02	ci left: 3.021416e-01	ci right 3.063981e-01	k: 54768	n:180000
KS ci ratio: 8.764875e-01	ci left: 6.355250e-05	ci right 1.648332e-04	k: 19	n:180000
STAC3   180000 perm   49 sec   (3651 perm/sec)   p_kst 1.055556e-04   p_cons 3.042667e-01   p_joint 1.427778e-03

Joint ci ratio: 2.415496e-01	ci left: 1.217110e-03	ci right 1.556291e-03	k: 262	n:190000
Cons ci ratio: 1.360069e-02	ci left: 3.021369e-01	ci right 3.062796e-01	k: 57799	n:190000
KS ci ratio: 8.764902e-01	ci left: 6.020757e-05	ci right 1.561580e-04	k: 19	n:190000
STAC3   190000 perm   53 sec   (3595 perm/sec)   p_kst 1.000000e-04   p_cons 3.042053e-01   p_joint 1.378947e-03

Joint ci ratio: 2.341002e-01	ci left: 1.236192e-03	ci right 1.568529e-03	k: 279	n:200000
Cons ci ratio: 1.324835e-02	ci left: 3.024436e-01	ci right 3.064821e-01	k: 60892	n:200000
KS ci ratio: 8.764926e-01	ci left: 5.719714e-05	ci right 1.483503e-04	k: 19	n:200000
STAC3   200000 perm   56 sec   (3540 perm/sec)   p_kst 9.500000e-05   p_cons 3.044600e-01   p_joint 1.395000e-03

Joint ci ratio: 2.261591e-01	ci left: 1.267077e-03	ci right 1.594552e-03	k: 299	n:210000
Cons ci ratio: 1.291609e-02	ci left: 3.029171e-01	ci right 3.068597e-01	k: 64026	n:210000
KS ci ratio: 8.357010e-01	ci left: 6.190261e-05	ci right 1.528566e-04	k: 21	n:210000
STAC3   210000 perm   60 sec   (3484 perm/sec)   p_kst 1.000000e-04   p_cons 3.048857e-01   p_joint 1.423810e-03

Joint ci ratio: 2.250425e-01	ci left: 1.222345e-03	ci right 1.536483e-03	k: 302	n:220000
Cons ci ratio: 1.262941e-02	ci left: 3.026182e-01	ci right 3.064688e-01	k: 66999	n:220000
KS ci ratio: 8.173319e-01	ci left: 6.267049e-05	ci right 1.513973e-04	k: 22	n:220000
STAC3   220000 perm   64 sec   (3433 perm/sec)   p_kst 1.000000e-04   p_cons 3.045409e-01   p_joint 1.372727e-03

Joint ci ratio: 2.243092e-01	ci left: 1.177403e-03	ci right 1.478868e-03	k: 304	n:230000
Cons ci ratio: 1.235440e-02	ci left: 3.025718e-01	ci right 3.063375e-01	k: 70024	n:230000
KS ci ratio: 7.839557e-01	ci left: 6.685873e-05	ci right 1.552573e-04	k: 24	n:230000
STAC3   230000 perm   68 sec   (3382 perm/sec)   p_kst 1.043478e-04   p_cons 3.044522e-01   p_joint 1.321739e-03

Joint ci ratio: 2.228569e-01	ci left: 1.144075e-03	ci right 1.434850e-03	k: 308	n:240000
Cons ci ratio: 1.208756e-02	ci left: 3.028463e-01	ci right 3.065334e-01	k: 73125	n:240000
KS ci ratio: 7.839575e-01	ci left: 6.407290e-05	ci right 1.487884e-04	k: 24	n:240000
STAC3   240000 perm   72 sec   (3333 perm/sec)   p_kst 1.000000e-04   p_cons 3.046875e-01   p_joint 1.283333e-03

Joint ci ratio: 2.196824e-01	ci left: 1.132316e-03	ci right 1.415449e-03	k: 317	n:250000
Cons ci ratio: 1.184490e-02	ci left: 3.028281e-01	ci right 3.064404e-01	k: 76158	n:250000
KS ci ratio: 7.687337e-01	ci left: 6.471574e-05	ci right 1.476162e-04	k: 25	n:250000
STAC3   250000 perm   76 sec   (3283 perm/sec)   p_kst 1.000000e-04   p_cons 3.046320e-01   p_joint 1.268000e-03

Joint ci ratio: 2.196878e-01	ci left: 1.088763e-03	ci right 1.361013e-03	k: 317	n:260000
Cons ci ratio: 1.161028e-02	ci left: 3.030309e-01	ci right 3.065735e-01	k: 79248	n:260000
KS ci ratio: 7.543637e-01	ci left: 6.532433e-05	ci right 1.465198e-04	k: 26	n:260000
STAC3   260000 perm   80 sec   (3235 perm/sec)   p_kst 1.000000e-04   p_cons 3.048000e-01   p_joint 1.219231e-03

Joint ci ratio: 2.349845e-01	ci left: 9.087069e-04	ci right 1.154058e-03	k: 277	n:270000
Cons ci ratio: 1.140162e-02	ci left: 3.027533e-01	ci right 3.062286e-01	k: 82212	n:270000
KS ci ratio: 7.407706e-01	ci left: 6.590163e-05	ci right 1.454914e-04	k: 27	n:270000
STAC3   270000 perm   85 sec   (3193 perm/sec)   p_kst 1.000000e-04   p_cons 3.044889e-01   p_joint 1.025926e-03

Joint ci ratio: 2.320821e-01	ci left: 8.997900e-04	ci right 1.139303e-03	k: 284	n:280000
Cons ci ratio: 1.120249e-02	ci left: 3.025461e-01	ci right 3.059580e-01	k: 85190	n:280000
KS ci ratio: 7.278867e-01	ci left: 6.645027e-05	ci right 1.445246e-04	k: 28	n:280000
STAC3   280000 perm   89 sec   (3148 perm/sec)   p_kst 1.000000e-04   p_cons 3.042500e-01   p_joint 1.014286e-03

Joint ci ratio: 2.316797e-01	ci left: 8.720092e-04	ci right 1.103667e-03	k: 285	n:290000
Cons ci ratio: 1.099883e-02	ci left: 3.029148e-01	ci right 3.062684e-01	k: 88331	n:290000
KS ci ratio: 7.156526e-01	ci left: 6.697256e-05	ci right 1.436135e-04	k: 29	n:290000
STAC3   290000 perm   93 sec   (3106 perm/sec)   p_kst 1.000000e-04   p_cons 3.045897e-01   p_joint 9.827586e-04

Joint ci ratio: 2.277326e-01	ci left: 8.743577e-04	ci right 1.102126e-03	k: 295	n:300000
Cons ci ratio: 1.082435e-02	ci left: 3.025373e-01	ci right 3.058332e-01	k: 91255	n:300000
KS ci ratio: 7.156538e-01	ci left: 6.474011e-05	ci right 1.388265e-04	k: 29	n:300000
STAC3   300000 perm   98 sec   (3066 perm/sec)   p_kst 9.666667e-05   p_cons 3.041833e-01   p_joint 9.833333e-04

Joint ci ratio: 2.262114e-01	ci left: 8.583214e-04	ci right 1.080210e-03	k: 299	n:310000
Cons ci ratio: 1.065018e-02	ci left: 3.024905e-01	ci right 3.057325e-01	k: 94274	n:310000
KS ci ratio: 7.040164e-01	ci left: 6.529406e-05	ci right 1.381483e-04	k: 30	n:310000
STAC3   310000 perm   102 sec   (3026 perm/sec)   p_kst 9.677419e-05   p_cons 3.041097e-01   p_joint 9.645161e-04

Joint ci ratio: 2.250911e-01	ci left: 8.403430e-04	ci right 1.056359e-03	k: 302	n:320000
Cons ci ratio: 1.048618e-02	ci left: 3.023659e-01	ci right 3.055564e-01	k: 97267	n:320000
KS ci ratio: 6.444058e-01	ci left: 7.879482e-05	ci right 1.557441e-04	k: 36	n:320000
STAC3   320000 perm   107 sec   (2986 perm/sec)   p_kst 1.125000e-04   p_cons 3.039594e-01   p_joint 9.437500e-04

Joint ci ratio: 2.247235e-01	ci left: 8.177366e-04	ci right 1.027550e-03	k: 303	n:330000
Cons ci ratio: 1.033256e-02	ci left: 3.021252e-01	ci right 3.052661e-01	k: 100219	n:330000
KS ci ratio: 6.358704e-01	ci left: 7.894487e-05	ci right 1.545410e-04	k: 37	n:330000
STAC3   330000 perm   112 sec   (2948 perm/sec)   p_kst 1.121212e-04   p_cons 3.036939e-01   p_joint 9.181818e-04

Joint ci ratio: 2.254701e-01	ci left: 7.881334e-04	ci right 9.911169e-04	k: 301	n:340000
Cons ci ratio: 1.018096e-02	ci left: 3.020869e-01	ci right 3.051811e-01	k: 103235	n:340000
KS ci ratio: 6.358715e-01	ci left: 7.662293e-05	ci right 1.499958e-04	k: 37	n:340000
STAC3   340000 perm   117 sec   (2911 perm/sec)   p_kst 1.088235e-04   p_cons 3.036324e-01   p_joint 8.852941e-04

Joint ci ratio: 2.247294e-01	ci left: 7.710066e-04	ci right 9.688363e-04	k: 303	n:350000
Cons ci ratio: 1.003544e-02	ci left: 3.020683e-01	ci right 3.051178e-01	k: 106257	n:350000
KS ci ratio: 6.358725e-01	ci left: 7.443367e-05	ci right 1.457103e-04	k: 37	n:350000
STAC3   350000 perm   122 sec   (2875 perm/sec)   p_kst 1.057143e-04   p_cons 3.035914e-01   p_joint 8.657143e-04

Joint ci ratio: 2.211216e-01	ci left: 7.758168e-04	ci right 9.712502e-04	k: 313	n:360000
Cons ci ratio: 9.897022e-03	ci left: 3.020066e-01	ci right 3.050132e-01	k: 109263	n:360000
KS ci ratio: 6.276675e-01	ci left: 7.469844e-05	ci right 1.448804e-04	k: 38	n:360000
STAC3   360000 perm   127 sec   (2840 perm/sec)   p_kst 1.055556e-04   p_cons 3.035083e-01   p_joint 8.694444e-04

Joint ci ratio: 2.173467e-01	ci left: 7.829464e-04	ci right 9.763594e-04	k: 324	n:370000
Cons ci ratio: 9.760934e-03	ci left: 3.020889e-01	ci right 3.050547e-01	k: 112321	n:370000
KS ci ratio: 6.197721e-01	ci left: 7.495459e-05	ci right 1.440899e-04	k: 39	n:370000
STAC3   370000 perm   132 sec   (2806 perm/sec)   p_kst 1.054054e-04   p_cons 3.035703e-01   p_joint 8.756757e-04

Joint ci ratio: 2.143983e-01	ci left: 7.847464e-04	ci right 9.756283e-04	k: 333	n:380000
Cons ci ratio: 9.627793e-03	ci left: 3.022775e-01	ci right 3.052044e-01	k: 115421	n:380000
KS ci ratio: 5.977598e-01	ci left: 7.965877e-05	ci right 1.493966e-04	k: 42	n:380000
STAC3   380000 perm   137 sec   (2774 perm/sec)   p_kst 1.105263e-04   p_cons 3.037395e-01   p_joint 8.763158e-04

Joint ci ratio: 2.128124e-01	ci left: 7.767591e-04	ci right 9.641181e-04	k: 338	n:390000
Cons ci ratio: 9.502028e-03	ci left: 3.023645e-01	ci right 3.052538e-01	k: 118485	n:390000
KS ci ratio: 5.909281e-01	ci left: 7.979422e-05	ci right 1.485118e-04	k: 43	n:390000
STAC3   390000 perm   142 sec   (2742 perm/sec)   p_kst 1.102564e-04   p_cons 3.038077e-01   p_joint 8.666667e-04

Joint ci ratio: 2.140825e-01	ci left: 7.478734e-04	ci right 9.294830e-04	k: 334	n:400000
Cons ci ratio: 9.383449e-03	ci left: 3.023400e-01	ci right 3.051928e-01	k: 121506	n:400000
KS ci ratio: 5.909290e-01	ci left: 7.779934e-05	ci right 1.447991e-04	k: 43	n:400000
STAC3   400000 perm   148 sec   (2710 perm/sec)   p_kst 1.075000e-04   p_cons 3.037650e-01   p_joint 8.350000e-04

Joint ci ratio: 2.100446e-01	ci left: 7.596566e-04	ci right 9.402007e-04	k: 347	n:410000
Cons ci ratio: 9.267598e-03	ci left: 3.023900e-01	ci right 3.052079e-01	k: 124557	n:410000
KS ci ratio: 5.909298e-01	ci left: 7.590177e-05	ci right 1.412675e-04	k: 43	n:410000
STAC3   410000 perm   153 sec   (2678 perm/sec)   p_kst 1.048780e-04   p_cons 3.037976e-01   p_joint 8.463415e-04

Joint ci ratio: 2.070899e-01	ci left: 7.641358e-04	ci right 9.428660e-04	k: 357	n:420000
Cons ci ratio: 9.159234e-03	ci left: 3.022857e-01	ci right 3.050694e-01	k: 127544	n:420000
KS ci ratio: 5.843271e-01	ci left: 7.612116e-05	ci right 1.406354e-04	k: 44	n:420000
STAC3   420000 perm   159 sec   (2645 perm/sec)   p_kst 1.047619e-04   p_cons 3.036762e-01   p_joint 8.500000e-04

Joint ci ratio: 2.037032e-01	ci left: 7.728373e-04	ci right 9.502787e-04	k: 369	n:430000
Cons ci ratio: 9.048561e-03	ci left: 3.024674e-01	ci right 3.052190e-01	k: 130652	n:430000
KS ci ratio: 5.657710e-01	ci left: 8.031231e-05	ci right 1.453463e-04	k: 47	n:430000
STAC3   430000 perm   164 sec   (2615 perm/sec)   p_kst 1.093023e-04   p_cons 3.038419e-01   p_joint 8.581395e-04

Joint ci ratio: 2.015362e-01	ci left: 7.725322e-04	ci right 9.477846e-04	k: 377	n:440000
Cons ci ratio: 8.944735e-03	ci left: 3.025026e-01	ci right 3.052228e-01	k: 133699	n:440000
KS ci ratio: 5.599682e-01	ci left: 8.043609e-05	ci right 1.446361e-04	k: 48	n:440000
STAC3   440000 perm   170 sec   (2586 perm/sec)   p_kst 1.090909e-04   p_cons 3.038614e-01   p_joint 8.568182e-04

Joint ci ratio: 2.109646e-01	ci left: 6.858136e-04	ci right 8.496136e-04	k: 344	n:450000
Cons ci ratio: 8.845285e-03	ci left: 3.024942e-01	ci right 3.051839e-01	k: 136727	n:450000
KS ci ratio: 5.488781e-01	ci left: 8.246990e-05	ci right 1.464836e-04	k: 50	n:450000
STAC3   450000 perm   176 sec   (2557 perm/sec)   p_kst 1.111111e-04   p_cons 3.038378e-01   p_joint 7.644444e-04

Joint ci ratio: 2.082652e-01	ci left: 6.894429e-04	ci right 8.517343e-04	k: 353	n:460000
Cons ci ratio: 8.748675e-03	ci left: 3.025059e-01	ci right 3.051662e-01	k: 139764	n:460000
KS ci ratio: 5.191839e-01	ci left: 9.196170e-05	ci right 1.580855e-04	k: 56	n:460000
STAC3   460000 perm   182 sec   (2530 perm/sec)   p_kst 1.217391e-04   p_cons 3.038348e-01   p_joint 7.673913e-04

Joint ci ratio: 2.065228e-01	ci left: 6.868768e-04	ci right 8.470405e-04	k: 359	n:470000
Cons ci ratio: 8.655424e-03	ci left: 3.025045e-01	ci right 3.051362e-01	k: 142795	n:470000
KS ci ratio: 5.191846e-01	ci left: 9.000504e-05	ci right 1.547221e-04	k: 56	n:470000
STAC3   470000 perm   188 sec   (2504 perm/sec)   p_kst 1.191489e-04   p_cons 3.038191e-01   p_joint 7.638298e-04

Joint ci ratio: 2.100577e-01	ci left: 6.488694e-04	ci right 8.030936e-04	k: 347	n:480000
Cons ci ratio: 8.562942e-03	ci left: 3.026094e-01	ci right 3.052138e-01	k: 145877	n:480000
KS ci ratio: 5.146896e-01	ci left: 8.994129e-05	ci right 1.538517e-04	k: 57	n:480000
STAC3   480000 perm   194 sec   (2478 perm/sec)   p_kst 1.187500e-04   p_cons 3.039104e-01   p_joint 7.229167e-04

Joint ci ratio: 2.255009e-01	ci left: 5.468602e-04	ci right 6.877249e-04	k: 301	n:490000
Cons ci ratio: 8.473976e-03	ci left: 3.026796e-01	ci right 3.052574e-01	k: 148944	n:490000
KS ci ratio: 5.103093e-01	ci left: 8.988248e-05	ci right 1.530146e-04	k: 58	n:490000
STAC3   490000 perm   200 sec   (2452 perm/sec)   p_kst 1.183673e-04   p_cons 3.039673e-01   p_joint 6.142857e-04

Joint ci ratio: 2.229319e-01	ci left: 5.491368e-04	ci right 6.887553e-04	k: 308	n:500000
Cons ci ratio: 8.387765e-03	ci left: 3.027451e-01	ci right 3.052971e-01	k: 152010	n:500000
KS ci ratio: 5.018735e-01	ci left: 9.157385e-05	ci right 1.544611e-04	k: 60	n:500000
STAC3   500000 perm   206 sec   (2427 perm/sec)   p_kst 1.200000e-04   p_cons 3.040200e-01   p_joint 6.160000e-04

Joint ci ratio: 1.555861e-01	ci left: 1.146410e-03	ci right 1.341679e-03	k: 633	n:510000
Cons ci ratio: 8.302902e-03	ci left: 3.028709e-01	ci right 3.053980e-01	k: 155108	n:510000
KS ci ratio: 4.938426e-01	ci left: 9.320720e-05	ci right 1.558428e-04	k: 62	n:510000
STAC3   510000 perm   212 sec   (2403 perm/sec)   p_kst 1.215686e-04   p_cons 3.041333e-01   p_joint 1.241176e-03

Joint ci ratio: 1.544940e-01	ci left: 1.141000e-03	ci right 1.333857e-03	k: 642	n:520000
Cons ci ratio: 8.222879e-03	ci left: 3.028728e-01	ci right 3.053755e-01	k: 158144	n:520000
KS ci ratio: 4.899694e-01	ci left: 9.309916e-05	ci right 1.550058e-04	k: 63	n:520000
STAC3   520000 perm   219 sec   (2378 perm/sec)   p_kst 1.211538e-04   p_cons 3.041231e-01   p_joint 1.234615e-03

Joint ci ratio: 1.538978e-01	ci left: 1.128541e-03	ci right 1.318488e-03	k: 647	n:530000
Cons ci ratio: 8.143202e-03	ci left: 3.029747e-01	ci right 3.054538e-01	k: 161233	n:530000
KS ci ratio: 4.899700e-01	ci left: 9.134255e-05	ci right 1.520812e-04	k: 63	n:530000
STAC3   530000 perm   225 sec   (2354 perm/sec)   p_kst 1.188679e-04   p_cons 3.042132e-01   p_joint 1.220755e-03

Joint ci ratio: 1.529572e-01	ci left: 1.121888e-03	ci right 1.309455e-03	k: 655	n:540000
Cons ci ratio: 8.066432e-03	ci left: 3.030396e-01	ci right 3.054958e-01	k: 164304	n:540000
KS ci ratio: 4.824887e-01	ci left: 9.290050e-05	ci right 1.534194e-04	k: 65	n:540000
STAC3   540000 perm   232 sec   (2331 perm/sec)   p_kst 1.203704e-04   p_cons 3.042667e-01   p_joint 1.212963e-03

Joint ci ratio: 1.513504e-01	ci left: 1.125976e-03	ci right 1.312070e-03	k: 669	n:550000
Cons ci ratio: 7.992650e-03	ci left: 3.030569e-01	ci right 3.054906e-01	k: 167350	n:550000
KS ci ratio: 4.788746e-01	ci left: 9.280917e-05	ci right 1.526669e-04	k: 66	n:550000
STAC3   550000 perm   238 sec   (2307 perm/sec)   p_kst 1.200000e-04   p_cons 3.042727e-01   p_joint 1.216364e-03

Joint ci ratio: 1.504554e-01	ci left: 1.119615e-03	ci right 1.303465e-03	k: 677	n:560000
Cons ci ratio: 7.921191e-03	ci left: 3.030558e-01	ci right 3.054677e-01	k: 170386	n:560000
KS ci ratio: 4.753405e-01	ci left: 9.272274e-05	ci right 1.519397e-04	k: 67	n:560000
STAC3   560000 perm   245 sec   (2285 perm/sec)   p_kst 1.196429e-04   p_cons 3.042607e-01   p_joint 1.208929e-03

Joint ci ratio: 1.510155e-01	ci left: 1.091530e-03	ci right 1.271496e-03	k: 672	n:570000
Cons ci ratio: 7.852006e-03	ci left: 3.030338e-01	ci right 3.054243e-01	k: 173410	n:570000
KS ci ratio: 4.718836e-01	ci left: 9.264091e-05	ci right 1.512365e-04	k: 68	n:570000
STAC3   570000 perm   252 sec   (2262 perm/sec)   p_kst 1.192982e-04   p_cons 3.042281e-01   p_joint 1.178947e-03

Joint ci ratio: 1.494686e-01	ci left: 1.095942e-03	ci right 1.274618e-03	k: 686	n:580000
Cons ci ratio: 7.782003e-03	ci left: 3.031539e-01	ci right 3.055239e-01	k: 176516	n:580000
KS ci ratio: 4.718841e-01	ci left: 9.104363e-05	ci right 1.486291e-04	k: 68	n:580000
STAC3   580000 perm   259 sec   (2240 perm/sec)   p_kst 1.172414e-04   p_cons 3.043379e-01   p_joint 1.182759e-03

Joint ci ratio: 1.492528e-01	ci left: 1.080629e-03	ci right 1.256532e-03	k: 688	n:590000
Cons ci ratio: 7.716402e-03	ci left: 3.031295e-01	ci right 3.054792e-01	k: 179539	n:590000
KS ci ratio: 4.718845e-01	ci left: 8.950050e-05	ci right 1.461100e-04	k: 68	n:590000
STAC3   590000 perm   266 sec   (2219 perm/sec)   p_kst 1.152542e-04   p_cons 3.043034e-01   p_joint 1.166102e-03

Joint ci ratio: 1.485009e-01	ci left: 1.073850e-03	ci right 1.247691e-03	k: 695	n:600000
Cons ci ratio: 7.653758e-03	ci left: 3.030327e-01	ci right 3.053626e-01	k: 182518	n:600000
KS ci ratio: 4.718850e-01	ci left: 8.800881e-05	ci right 1.436748e-04	k: 68	n:600000
STAC3   600000 perm   273 sec   (2198 perm/sec)   p_kst 1.133333e-04   p_cons 3.041967e-01   p_joint 1.158333e-03

Joint ci ratio: 1.473412e-01	ci left: 1.073611e-03	ci right 1.245937e-03	k: 706	n:610000
Cons ci ratio: 7.589822e-03	ci left: 3.030947e-01	ci right 3.054055e-01	k: 185592	n:610000
KS ci ratio: 4.651910e-01	ci left: 8.945751e-05	ci right 1.449827e-04	k: 70	n:610000
STAC3   610000 perm   280 sec   (2178 perm/sec)   p_kst 1.147541e-04   p_cons 3.042492e-01   p_joint 1.157377e-03

Joint ci ratio: 1.413631e-01	ci left: 1.151133e-03	ci right 1.327774e-03	k: 767	n:620000
Cons ci ratio: 7.688878e-03	ci left: 2.942565e-01	ci right 2.965293e-01	k: 183143	n:620000
KS ci ratio: 4.619492e-01	ci left: 8.943910e-05	ci right 1.444444e-04	k: 71	n:620000
STAC3   620000 perm   287 sec   (2158 perm/sec)   p_kst 1.145161e-04   p_cons 2.953919e-01   p_joint 1.237097e-03

Joint ci ratio: 1.401815e-01	ci left: 1.152770e-03	ci right 1.328059e-03	k: 780	n:630000
Cons ci ratio: 7.626969e-03	ci left: 2.943005e-01	ci right 2.965553e-01	k: 186119	n:630000
KS ci ratio: 4.587744e-01	ci left: 8.942257e-05	ci right 1.439218e-04	k: 72	n:630000
STAC3   630000 perm   295 sec   (2138 perm/sec)   p_kst 1.142857e-04   p_cons 2.954270e-01   p_joint 1.238095e-03

Joint ci ratio: 1.398249e-01	ci left: 1.140788e-03	ci right 1.313777e-03	k: 784	n:640000
Cons ci ratio: 7.568322e-03	ci left: 2.942450e-01	ci right 2.964819e-01	k: 189032	n:640000
KS ci ratio: 4.556640e-01	ci left: 8.940782e-05	ci right 1.434144e-04	k: 73	n:640000
STAC3   640000 perm   302 sec   (2118 perm/sec)   p_kst 1.140625e-04   p_cons 2.953625e-01   p_joint 1.225000e-03

Joint ci ratio: 1.385075e-01	ci left: 1.145511e-03	ci right 1.317445e-03	k: 799	n:650000
Cons ci ratio: 7.510451e-03	ci left: 2.942219e-01	ci right 2.964415e-01	k: 191965	n:650000
KS ci ratio: 4.556645e-01	ci left: 8.803230e-05	ci right 1.412080e-04	k: 73	n:650000
STAC3   650000 perm   310 sec   (2099 perm/sec)   p_kst 1.123077e-04   p_cons 2.953308e-01   p_joint 1.229231e-03

Joint ci ratio: 1.378206e-01	ci left: 1.139857e-03	ci right 1.310024e-03	k: 807	n:660000
Cons ci ratio: 7.455055e-03	ci left: 2.941345e-01	ci right 2.963370e-01	k: 194855	n:660000
KS ci ratio: 4.466991e-01	ci left: 9.072734e-05	ci right 1.441272e-04	k: 76	n:660000
STAC3   660000 perm   317 sec   (2081 perm/sec)   p_kst 1.151515e-04   p_cons 2.952348e-01   p_joint 1.222727e-03

Joint ci ratio: 1.368920e-01	ci left: 1.138698e-03	ci right 1.307453e-03	k: 818	n:670000
Cons ci ratio: 7.398558e-03	ci left: 2.941795e-01	ci right 2.963655e-01	k: 197832	n:670000
KS ci ratio: 4.382428e-01	ci left: 9.335189e-05	ci right 1.469495e-04	k: 79	n:670000
STAC3   670000 perm   325 sec   (2063 perm/sec)   p_kst 1.179104e-04   p_cons 2.952716e-01   p_joint 1.220896e-03

Joint ci ratio: 1.361464e-01	ci left: 1.134735e-03	ci right 1.301913e-03	k: 827	n:680000
Cons ci ratio: 7.343170e-03	ci left: 2.942321e-01	ci right 2.964020e-01	k: 200815	n:680000
KS ci ratio: 4.382432e-01	ci left: 9.197905e-05	ci right 1.447885e-04	k: 79	n:680000
STAC3   680000 perm   332 sec   (2046 perm/sec)   p_kst 1.161765e-04   p_cons 2.953162e-01   p_joint 1.216176e-03

Joint ci ratio: 1.350899e-01	ci left: 1.136491e-03	ci right 1.302524e-03	k: 840	n:690000
Cons ci ratio: 7.289895e-03	ci left: 2.942325e-01	ci right 2.963866e-01	k: 203763	n:690000
KS ci ratio: 4.382436e-01	ci left: 9.064601e-05	ci right 1.426901e-04	k: 79	n:690000
STAC3   690000 perm   340 sec   (2029 perm/sec)   p_kst 1.144928e-04   p_cons 2.953087e-01   p_joint 1.217391e-03

Joint ci ratio: 1.341363e-01	ci left: 1.136821e-03	ci right 1.301637e-03	k: 852	n:700000
Cons ci ratio: 7.237814e-03	ci left: 2.942301e-01	ci right 2.963688e-01	k: 206709	n:700000
KS ci ratio: 4.355300e-01	ci left: 9.062247e-05	ci right 1.422365e-04	k: 80	n:700000
STAC3   700000 perm   348 sec   (2011 perm/sec)   p_kst 1.142857e-04   p_cons 2.952986e-01   p_joint 1.217143e-03

Joint ci ratio: 1.337456e-01	ci left: 1.127616e-03	ci right 1.290582e-03	k: 857	n:710000
Cons ci ratio: 7.185982e-03	ci left: 2.942770e-01	ci right 2.964007e-01	k: 209690	n:710000
KS ci ratio: 4.355304e-01	ci left: 8.934608e-05	ci right 1.402332e-04	k: 80	n:710000
STAC3   710000 perm   356 sec   (1994 perm/sec)   p_kst 1.126761e-04   p_cons 2.953380e-01   p_joint 1.207042e-03

Joint ci ratio: 1.330499e-01	ci left: 1.124037e-03	ci right 1.285575e-03	k: 866	n:720000
Cons ci ratio: 7.134509e-03	ci left: 2.943658e-01	ci right 2.964748e-01	k: 212702	n:720000
KS ci ratio: 4.328666e-01	ci left: 8.934221e-05	ci right 1.398253e-04	k: 81	n:720000
STAC3   720000 perm   364 sec   (1976 perm/sec)   p_kst 1.125000e-04   p_cons 2.954194e-01   p_joint 1.202778e-03

Joint ci ratio: 1.462210e-01	ci left: 9.116368e-04	ci right 1.056754e-03	k: 717	n:730000
Cons ci ratio: 7.086155e-03	ci left: 2.943330e-01	ci right 2.964275e-01	k: 215627	n:730000
KS ci ratio: 4.302511e-01	ci left: 8.933937e-05	ci right 1.394277e-04	k: 82	n:730000
STAC3   730000 perm   372 sec   (1960 perm/sec)   p_kst 1.123288e-04   p_cons 2.953795e-01   p_joint 9.821918e-04

Joint ci ratio: 1.456143e-01	ci left: 9.071293e-04	ci right 1.050877e-03	k: 723	n:740000
Cons ci ratio: 7.038749e-03	ci left: 2.943026e-01	ci right 2.963828e-01	k: 218553	n:740000
KS ci ratio: 4.276825e-01	ci left: 8.933750e-05	ci right 1.390400e-04	k: 83	n:740000
STAC3   740000 perm   381 sec   (1944 perm/sec)   p_kst 1.121622e-04   p_cons 2.953419e-01   p_joint 9.770270e-04

Joint ci ratio: 1.505897e-01	ci left: 8.346867e-04	ci right 9.718819e-04	k: 676	n:750000
Cons ci ratio: 6.992415e-03	ci left: 2.942651e-01	ci right 2.963312e-01	k: 221473	n:750000
KS ci ratio: 4.226800e-01	ci left: 9.052761e-05	ci right 1.401365e-04	k: 85	n:750000
STAC3   750000 perm   389 sec   (1928 perm/sec)   p_kst 1.133333e-04   p_cons 2.952973e-01   p_joint 9.013333e-04

Joint ci ratio: 1.344588e-01	ci left: 1.041982e-03	ci right 1.193440e-03	k: 848	n:760000
Cons ci ratio: 6.656960e-03	ci left: 3.122625e-01	ci right 3.143494e-01	k: 238112	n:760000
KS ci ratio: 4.226803e-01	ci left: 8.933645e-05	ci right 1.382927e-04	k: 85	n:760000
STAC3   760000 perm   397 sec   (1912 perm/sec)   p_kst 1.118421e-04   p_cons 3.133053e-01   p_joint 1.115789e-03

Joint ci ratio: 1.339083e-01	ci left: 1.037236e-03	ci right 1.187337e-03	k: 855	n:770000
Cons ci ratio: 6.613633e-03	ci left: 3.122666e-01	ci right 3.143400e-01	k: 241243	n:770000
KS ci ratio: 4.178493e-01	ci left: 9.049892e-05	ci right 1.393672e-04	k: 87	n:770000
STAC3   770000 perm   406 sec   (1896 perm/sec)   p_kst 1.129870e-04   p_cons 3.133026e-01   p_joint 1.110390e-03

Joint ci ratio: 1.332871e-01	ci left: 1.033851e-03	ci right 1.182714e-03	k: 863	n:780000
Cons ci ratio: 6.572629e-03	ci left: 3.121734e-01	ci right 3.142332e-01	k: 244298	n:780000
KS ci ratio: 4.131802e-01	ci left: 9.163470e-05	ci right 1.404112e-04	k: 89	n:780000
STAC3   780000 perm   415 sec   (1881 perm/sec)   p_kst 1.141026e-04   p_cons 3.132026e-01   p_joint 1.106410e-03

Joint ci ratio: 1.325985e-01	ci left: 1.031778e-03	ci right 1.179514e-03	k: 872	n:790000
Cons ci ratio: 6.529707e-03	ci left: 3.122583e-01	ci right 3.143051e-01	k: 247492	n:790000
KS ci ratio: 4.131805e-01	ci left: 9.047475e-05	ci right 1.386338e-04	k: 89	n:790000
STAC3   790000 perm   423 sec   (1866 perm/sec)   p_kst 1.126582e-04   p_cons 3.132810e-01   p_joint 1.103797e-03

Joint ci ratio: 1.442305e-01	ci left: 8.559584e-04	ci right 9.901976e-04	k: 737	n:800000
Cons ci ratio: 6.488199e-03	ci left: 3.123024e-01	ci right 3.143365e-01	k: 250655	n:800000
KS ci ratio: 4.086645e-01	ci left: 9.158536e-05	ci right 1.396580e-04	k: 91	n:800000
STAC3   800000 perm   432 sec   (1851 perm/sec)   p_kst 1.137500e-04   p_cons 3.133187e-01   p_joint 9.212500e-04

Joint ci ratio: 1.429764e-01	ci left: 8.608639e-04	ci right 9.945984e-04	k: 750	n:810000
Cons ci ratio: 6.448916e-03	ci left: 3.122492e-01	ci right 3.142706e-01	k: 253740	n:810000
KS ci ratio: 4.064615e-01	ci left: 9.156266e-05	ci right 1.392943e-04	k: 92	n:810000
STAC3   810000 perm   441 sec   (1836 perm/sec)   p_kst 1.135802e-04   p_cons 3.132593e-01   p_joint 9.259259e-04

Joint ci ratio: 1.491690e-01	ci left: 7.786904e-04	ci right 9.053663e-04	k: 689	n:820000
Cons ci ratio: 6.409157e-03	ci left: 3.122766e-01	ci right 3.142857e-01	k: 256890	n:820000
KS ci ratio: 4.042937e-01	ci left: 9.154119e-05	ci right 1.389388e-04	k: 93	n:820000
STAC3   820000 perm   450 sec   (1822 perm/sec)   p_kst 1.134146e-04   p_cons 3.132805e-01   p_joint 8.402439e-04

Joint ci ratio: 1.486317e-01	ci left: 7.751082e-04	ci right 9.007068e-04	k: 694	n:830000
Cons ci ratio: 6.372015e-03	ci left: 3.121758e-01	ci right 3.141725e-01	k: 259934	n:830000
KS ci ratio: 4.021603e-01	ci left: 9.152090e-05	ci right 1.385912e-04	k: 94	n:830000
STAC3   830000 perm   459 sec   (1808 perm/sec)   p_kst 1.132530e-04   p_cons 3.131735e-01   p_joint 8.361446e-04

Joint ci ratio: 1.478889e-01	ci left: 7.739049e-04	ci right 8.986264e-04	k: 701	n:840000
Cons ci ratio: 6.334302e-03	ci left: 3.121595e-01	ci right 3.141442e-01	k: 263047	n:840000
KS ci ratio: 4.000602e-01	ci left: 9.150173e-05	ci right 1.382513e-04	k: 95	n:840000
STAC3   840000 perm   468 sec   (1794 perm/sec)   p_kst 1.130952e-04   p_cons 3.131512e-01   p_joint 8.345238e-04

Joint ci ratio: 1.486332e-01	ci left: 7.568698e-04	ci right 8.795143e-04	k: 694	n:850000
Cons ci ratio: 6.297818e-03	ci left: 3.121048e-01	ci right 3.140777e-01	k: 266127	n:850000
KS ci ratio: 3.979928e-01	ci left: 9.148364e-05	ci right 1.379188e-04	k: 96	n:850000
STAC3   850000 perm   477 sec   (1781 perm/sec)   p_kst 1.129412e-04   p_cons 3.130906e-01   p_joint 8.164706e-04

Joint ci ratio: 1.479959e-01	ci left: 7.547868e-04	ci right 8.765230e-04	k: 700	n:860000
Cons ci ratio: 6.259166e-03	ci left: 3.122431e-01	ci right 3.142047e-01	k: 269372	n:860000
KS ci ratio: 3.979930e-01	ci left: 9.041987e-05	ci right 1.363151e-04	k: 96	n:860000
STAC3   860000 perm   487 sec   (1766 perm/sec)   p_kst 1.116279e-04   p_cons 3.132233e-01   p_joint 8.139535e-04

Joint ci ratio: 1.467449e-01	ci left: 7.593957e-04	ci right 8.807492e-04	k: 712	n:870000
Cons ci ratio: 6.222894e-03	ci left: 3.122622e-01	ci right 3.142126e-01	k: 272516	n:870000
KS ci ratio: 3.919772e-01	ci left: 9.248635e-05	ci right 1.385373e-04	k: 99	n:870000
STAC3   870000 perm   496 sec   (1753 perm/sec)   p_kst 1.137931e-04   p_cons 3.132368e-01   p_joint 8.183908e-04

Joint ci ratio: 1.455251e-01	ci left: 7.639041e-04	ci right 8.848751e-04	k: 724	n:880000
Cons ci ratio: 6.186837e-03	ci left: 3.123094e-01	ci right 3.142487e-01	k: 275685	n:880000
KS ci ratio: 3.900320e-01	ci left: 9.246001e-05	ci right 1.382106e-04	k: 100	n:880000
STAC3   880000 perm   506 sec   (1740 perm/sec)   p_kst 1.136364e-04   p_cons 3.132784e-01   p_joint 8.227273e-04

Joint ci ratio: 1.449268e-01	ci left: 7.618175e-04	ci right 8.819191e-04	k: 730	n:890000
Cons ci ratio: 6.151544e-03	ci left: 3.123454e-01	ci right 3.142738e-01	k: 278845	n:890000
KS ci ratio: 3.881154e-01	ci left: 9.243481e-05	ci right 1.378906e-04	k: 101	n:890000
STAC3   890000 perm   515 sec   (1727 perm/sec)   p_kst 1.134831e-04   p_cons 3.133090e-01   p_joint 8.202247e-04

Joint ci ratio: 1.458287e-01	ci left: 7.437161e-04	ci right 8.617572e-04	k: 721	n:900000
Cons ci ratio: 6.117955e-03	ci left: 3.123029e-01	ci right 3.142205e-01	k: 281935	n:900000
KS ci ratio: 3.881156e-01	ci left: 9.140774e-05	ci right 1.363585e-04	k: 101	n:900000
STAC3   900000 perm   526 sec   (1713 perm/sec)   p_kst 1.122222e-04   p_cons 3.132611e-01   p_joint 8.011111e-04

Joint ci ratio: 1.455271e-01	ci left: 7.387197e-04	ci right 8.557043e-04	k: 724	n:910000
Cons ci ratio: 6.084940e-03	ci left: 3.122592e-01	ci right 3.141662e-01	k: 285023	n:910000
KS ci ratio: 3.843654e-01	ci left: 9.238766e-05	ci right 1.372703e-04	k: 103	n:910000
STAC3   910000 perm   535 sec   (1700 perm/sec)   p_kst 1.131868e-04   p_cons 3.132121e-01   p_joint 7.956044e-04

Joint ci ratio: 1.454274e-01	ci left: 7.317374e-04	ci right 8.475299e-04	k: 725	n:920000
Cons ci ratio: 6.053219e-03	ci left: 3.121622e-01	ci right 3.140586e-01	k: 288061	n:920000
KS ci ratio: 3.825308e-01	ci left: 9.236562e-05	ci right 1.369695e-04	k: 104	n:920000
STAC3   920000 perm   546 sec   (1684 perm/sec)   p_kst 1.130435e-04   p_cons 3.131098e-01   p_joint 7.880435e-04

Joint ci ratio: 1.447314e-01	ci left: 7.311229e-04	ci right 8.462166e-04	k: 732	n:930000
Cons ci ratio: 6.020137e-03	ci left: 3.121994e-01	ci right 3.140856e-01	k: 291222	n:930000
KS ci ratio: 3.825310e-01	ci left: 9.137243e-05	ci right 1.354967e-04	k: 104	n:930000
STAC3   930000 perm   556 sec   (1672 perm/sec)   p_kst 1.118280e-04   p_cons 3.131419e-01   p_joint 7.870968e-04

Joint ci ratio: 1.485321e-01	ci left: 6.854259e-04	ci right 7.964112e-04	k: 695	n:940000
Cons ci ratio: 5.987888e-03	ci left: 3.122146e-01	ci right 3.140908e-01	k: 294363	n:940000
KS ci ratio: 3.789389e-01	ci left: 9.232442e-05	ci right 1.363856e-04	k: 106	n:940000
STAC3   940000 perm   566 sec   (1660 perm/sec)   p_kst 1.127660e-04   p_cons 3.131521e-01   p_joint 7.393617e-04

Joint ci ratio: 1.474762e-01	ci left: 6.883475e-04	ci right 7.989437e-04	k: 705	n:950000
Cons ci ratio: 5.956297e-03	ci left: 3.122190e-01	ci right 3.140853e-01	k: 297494	n:950000
KS ci ratio: 3.754462e-01	ci left: 9.325826e-05	ci right 1.372539e-04	k: 108	n:950000
STAC3   950000 perm   576 sec   (1649 perm/sec)   p_kst 1.136842e-04   p_cons 3.131516e-01   p_joint 7.421053e-04

Joint ci ratio: 1.467506e-01	ci left: 6.882005e-04	ci right 7.981813e-04	k: 712	n:960000
Cons ci ratio: 5.925689e-03	ci left: 3.121880e-01	ci right 3.140444e-01	k: 300591	n:960000
KS ci ratio: 3.754464e-01	ci left: 9.228682e-05	ci right 1.358242e-04	k: 108	n:960000
STAC3   960000 perm   586 sec   (1637 perm/sec)   p_kst 1.125000e-04   p_cons 3.131156e-01   p_joint 7.416667e-04

Joint ci ratio: 1.466482e-01	ci left: 6.820986e-04	ci right 7.910215e-04	k: 713	n:970000
Cons ci ratio: 5.895265e-03	ci left: 3.121782e-01	ci right 3.140250e-01	k: 303708	n:970000
KS ci ratio: 3.737359e-01	ci left: 9.226927e-05	ci right 1.355515e-04	k: 109	n:970000
STAC3   970000 perm   597 sec   (1626 perm/sec)   p_kst 1.123711e-04   p_cons 3.131010e-01   p_joint 7.350515e-04

Joint ci ratio: 1.459346e-01	ci left: 6.820198e-04	ci right 7.903540e-04	k: 720	n:980000
Cons ci ratio: 5.864387e-03	ci left: 3.122359e-01	ci right 3.140734e-01	k: 306891	n:980000
KS ci ratio: 3.737362e-01	ci left: 9.132774e-05	ci right 1.341683e-04	k: 109	n:980000
STAC3   980000 perm   607 sec   (1614 perm/sec)   p_kst 1.112245e-04   p_cons 3.131541e-01   p_joint 7.346939e-04

Joint ci ratio: 1.477930e-01	ci left: 6.576163e-04	ci right 7.635220e-04	k: 702	n:990000
Cons ci ratio: 5.834249e-03	ci left: 3.122733e-01	ci right 3.141015e-01	k: 310055	n:990000
KS ci ratio: 3.720489e-01	ci left: 9.132068e-05	ci right 1.339174e-04	k: 110	n:990000
STAC3   990000 perm   618 sec   (1603 perm/sec)   p_kst 1.111111e-04   p_cons 3.131869e-01   p_joint 7.090909e-04

Joint ci ratio: 1.475836e-01	ci left: 6.529662e-04	ci right 7.579608e-04	k: 704	n:1000000
Cons ci ratio: 5.928678e-03	ci left: 3.032884e-01	ci right 3.050928e-01	k: 304190	n:1000000
KS ci ratio: 3.720491e-01	ci left: 9.040746e-05	ci right 1.325783e-04	k: 110	n:1000000
STAC3   1000000 perm   628 sec   (1592 perm/sec)   p_kst 1.100000e-04   p_cons 3.041900e-01   p_joint 7.040000e-04

Joint ci ratio: 1.474795e-01	ci left: 6.474546e-04	ci right 7.514830e-04	k: 705	n:1010000
Cons ci ratio: 5.899351e-03	ci left: 3.032860e-01	ci right 3.050815e-01	k: 307225	n:1010000
KS ci ratio: 3.671207e-01	ci left: 9.220680e-05	ci right 1.345105e-04	k: 113	n:1010000
STAC3   1010000 perm   638 sec   (1582 perm/sec)   p_kst 1.118812e-04   p_cons 3.041832e-01   p_joint 6.980198e-04

Joint ci ratio: 1.478999e-01	ci left: 6.373301e-04	ci right 7.400494e-04	k: 701	n:1020000
Cons ci ratio: 5.869720e-03	ci left: 3.033366e-01	ci right 3.051233e-01	k: 310314	n:1020000
KS ci ratio: 3.655211e-01	ci left: 9.219296e-05	ci right 1.342620e-04	k: 114	n:1020000
STAC3   1020000 perm   649 sec   (1571 perm/sec)   p_kst 1.117647e-04   p_cons 3.042294e-01   p_joint 6.872549e-04

Joint ci ratio: 1.474805e-01	ci left: 6.348823e-04	ci right 7.368915e-04	k: 705	n:1030000
Cons ci ratio: 5.841429e-03	ci left: 3.033213e-01	ci right 3.050992e-01	k: 313336	n:1030000
KS ci ratio: 3.639422e-01	ci left: 9.217978e-05	ci right 1.340180e-04	k: 115	n:1030000
STAC3   1030000 perm   660 sec   (1561 perm/sec)   p_kst 1.116505e-04   p_cons 3.042097e-01   p_joint 6.844660e-04

Joint ci ratio: 1.558818e-01	ci left: 5.603206e-04	ci right 6.559578e-04	k: 631	n:1040000
Cons ci ratio: 5.813609e-03	ci left: 3.033014e-01	ci right 3.050708e-01	k: 316353	n:1040000
KS ci ratio: 3.623836e-01	ci left: 9.216724e-05	ci right 1.337783e-04	k: 116	n:1040000
STAC3   1040000 perm   671 sec   (1550 perm/sec)   p_kst 1.115385e-04   p_cons 3.041856e-01   p_joint 6.067308e-04

Joint ci ratio: 1.576390e-01	ci left: 5.421735e-04	ci right 6.358552e-04	k: 617	n:1050000
Cons ci ratio: 5.786677e-03	ci left: 3.032459e-01	ci right 3.050067e-01	k: 319332	n:1050000
KS ci ratio: 3.623838e-01	ci left: 9.128945e-05	ci right 1.325042e-04	k: 116	n:1050000
STAC3   1050000 perm   682 sec   (1540 perm/sec)   p_kst 1.104762e-04   p_cons 3.041257e-01   p_joint 5.876190e-04

Joint ci ratio: 1.575120e-01	ci left: 5.379647e-04	ci right 6.308372e-04	k: 618	n:1060000
Cons ci ratio: 5.759410e-03	ci left: 3.032432e-01	ci right 3.049956e-01	k: 322366	n:1060000
KS ci ratio: 3.608450e-01	ci left: 9.128591e-05	ci right 1.322829e-04	k: 117	n:1060000
STAC3   1060000 perm   693 sec   (1530 perm/sec)   p_kst 1.103774e-04   p_cons 3.041189e-01   p_joint 5.830189e-04

Joint ci ratio: 1.563790e-01	ci left: 5.410180e-04	ci right 6.336828e-04	k: 627	n:1070000
Cons ci ratio: 5.733436e-03	ci left: 3.031733e-01	ci right 3.049175e-01	k: 325328	n:1070000
KS ci ratio: 3.593257e-01	ci left: 9.128280e-05	ci right 1.320654e-04	k: 118	n:1070000
STAC3   1070000 perm   704 sec   (1520 perm/sec)   p_kst 1.102804e-04   p_cons 3.040449e-01   p_joint 5.859813e-04

Joint ci ratio: 1.560071e-01	ci left: 5.386777e-04	ci right 6.307017e-04	k: 630	n:1080000
Cons ci ratio: 5.707249e-03	ci left: 3.031464e-01	ci right 3.048824e-01	k: 328335	n:1080000
KS ci ratio: 3.578254e-01	ci left: 9.128011e-05	ci right 1.318516e-04	k: 119	n:1080000
STAC3   1080000 perm   715 sec   (1510 perm/sec)   p_kst 1.101852e-04   p_cons 3.040139e-01   p_joint 5.833333e-04

Joint ci ratio: 1.552706e-01	ci left: 5.390259e-04	ci right 6.306342e-04	k: 636	n:1090000
Cons ci ratio: 5.681182e-03	ci left: 3.031375e-01	ci right 3.048654e-01	k: 331361	n:1090000
KS ci ratio: 3.563437e-01	ci left: 9.127781e-05	ci right 1.316413e-04	k: 120	n:1090000
STAC3   1090000 perm   726 sec   (1501 perm/sec)   p_kst 1.100917e-04   p_cons 3.040009e-01   p_joint 5.834862e-04

Joint ci ratio: 1.545445e-01	ci left: 5.393688e-04	ci right 6.305670e-04	k: 642	n:1100000
Cons ci ratio: 5.655713e-03	ci left: 3.031105e-01	ci right 3.048305e-01	k: 334367	n:1100000
KS ci ratio: 3.534346e-01	ci left: 9.210412e-05	ci right 1.324242e-04	k: 122	n:1100000
STAC3   1100000 perm   738 sec   (1491 perm/sec)   p_kst 1.109091e-04   p_cons 3.039700e-01   p_joint 5.836364e-04

Joint ci ratio: 1.535918e-01	ci left: 5.414390e-04	ci right 6.323710e-04	k: 650	n:1110000
Cons ci ratio: 5.630488e-03	ci left: 3.030912e-01	ci right 3.048035e-01	k: 337381	n:1110000
KS ci ratio: 3.492014e-01	ci left: 9.373859e-05	ci right 1.341714e-04	k: 125	n:1110000
STAC3   1110000 perm   749 sec   (1482 perm/sec)   p_kst 1.126126e-04   p_cons 3.039468e-01   p_joint 5.855856e-04

Joint ci ratio: 1.527725e-01	ci left: 5.426152e-04	ci right 6.332142e-04	k: 657	n:1120000
Cons ci ratio: 5.605360e-03	ci left: 3.030902e-01	ci right 3.047948e-01	k: 340415	n:1120000
KS ci ratio: 3.464624e-01	ci left: 9.453137e-05	ci right 1.349145e-04	k: 127	n:1120000
STAC3   1120000 perm   760 sec   (1473 perm/sec)   p_kst 1.133929e-04   p_cons 3.039420e-01   p_joint 5.866071e-04

Joint ci ratio: 1.523104e-01	ci left: 5.412180e-04	ci right 6.312854e-04	k: 661	n:1130000
Cons ci ratio: 5.579959e-03	ci left: 3.031352e-01	ci right 3.048322e-01	k: 343501	n:1130000
KS ci ratio: 3.464625e-01	ci left: 9.369480e-05	ci right 1.337206e-04	k: 127	n:1130000
STAC3   1130000 perm   772 sec   (1463 perm/sec)   p_kst 1.123894e-04   p_cons 3.039832e-01   p_joint 5.849558e-04

Joint ci ratio: 1.516248e-01	ci left: 5.415335e-04	ci right 6.312109e-04	k: 667	n:1140000
Cons ci ratio: 5.555027e-03	ci left: 3.031697e-01	ci right 3.048594e-01	k: 346576	n:1140000
KS ci ratio: 3.451171e-01	ci left: 9.367393e-05	ci right 1.335007e-04	k: 128	n:1140000
STAC3   1140000 perm   784 sec   (1454 perm/sec)   p_kst 1.122807e-04   p_cons 3.040140e-01   p_joint 5.850877e-04

Joint ci ratio: 1.512857e-01	ci left: 5.393343e-04	ci right 6.284297e-04	k: 670	n:1150000
Cons ci ratio: 5.530653e-03	ci left: 3.031863e-01	ci right 3.048686e-01	k: 349631	n:1150000
KS ci ratio: 3.451172e-01	ci left: 9.285937e-05	ci right 1.323398e-04	k: 128	n:1150000
STAC3   1150000 perm   796 sec   (1446 perm/sec)   p_kst 1.113043e-04   p_cons 3.040270e-01   p_joint 5.826087e-04

Joint ci ratio: 1.506138e-01	ci left: 5.396619e-04	ci right 6.283798e-04	k: 676	n:1160000
Cons ci ratio: 5.507854e-03	ci left: 3.031061e-01	ci right 3.047810e-01	k: 352574	n:1160000
KS ci ratio: 3.437873e-01	ci left: 9.284635e-05	ci right 1.321353e-04	k: 129	n:1160000
STAC3   1160000 perm   809 sec   (1434 perm/sec)   p_kst 1.112069e-04   p_cons 3.039431e-01   p_joint 5.827586e-04

Joint ci ratio: 1.494046e-01	ci left: 5.440983e-04	ci right 6.327632e-04	k: 687	n:1170000
Cons ci ratio: 5.484170e-03	ci left: 3.031170e-01	ci right 3.047848e-01	k: 355622	n:1170000
KS ci ratio: 3.424727e-01	ci left: 9.283385e-05	ci right 1.319340e-04	k: 130	n:1170000
STAC3   1170000 perm   821 sec   (1425 perm/sec)   p_kst 1.111111e-04   p_cons 3.039504e-01   p_joint 5.871795e-04

Joint ci ratio: 1.534766e-01	ci left: 5.101340e-04	ci right 5.957382e-04	k: 651	n:1180000
Cons ci ratio: 5.461239e-03	ci left: 3.030931e-01	ci right 3.047537e-01	k: 358629	n:1180000
KS ci ratio: 3.424728e-01	ci left: 9.204712e-05	ci right 1.308160e-04	k: 130	n:1180000
STAC3   1180000 perm   833 sec   (1417 perm/sec)   p_kst 1.101695e-04   p_cons 3.039229e-01   p_joint 5.516949e-04

Joint ci ratio: 1.525434e-01	ci left: 5.123125e-04	ci right 5.977119e-04	k: 659	n:1190000
Cons ci ratio: 5.437534e-03	ci left: 3.031518e-01	ci right 3.048055e-01	k: 361734	n:1190000
KS ci ratio: 3.398880e-01	ci left: 9.281030e-05	ci right 1.315408e-04	k: 132	n:1190000
STAC3   1190000 perm   845 sec   (1408 perm/sec)   p_kst 1.109244e-04   p_cons 3.039782e-01   p_joint 5.537815e-04

Joint ci ratio: 1.524283e-01	ci left: 5.088447e-04	ci right 5.935961e-04	k: 660	n:1200000
Cons ci ratio: 5.414401e-03	ci left: 3.031887e-01	ci right 3.048356e-01	k: 364814	n:1200000
KS ci ratio: 3.398881e-01	ci left: 9.203688e-05	ci right 1.304446e-04	k: 132	n:1200000
STAC3   1200000 perm   859 sec   (1398 perm/sec)   p_kst 1.100000e-04   p_cons 3.040117e-01   p_joint 5.500000e-04

Joint ci ratio: 1.518550e-01	ci left: 5.086143e-04	ci right 5.929798e-04	k: 665	n:1210000
Cons ci ratio: 5.392319e-03	ci left: 3.031656e-01	ci right 3.048056e-01	k: 367822	n:1210000
KS ci ratio: 3.398883e-01	ci left: 9.127624e-05	ci right 1.293666e-04	k: 132	n:1210000
STAC3   1210000 perm   871 sec   (1390 perm/sec)   p_kst 1.090909e-04   p_cons 3.039851e-01   p_joint 5.495868e-04

Joint ci ratio: 1.512882e-01	ci left: 5.083883e-04	ci right 5.923730e-04	k: 670	n:1220000
Cons ci ratio: 5.370870e-03	ci left: 3.031142e-01	ci right 3.047474e-01	k: 370795	n:1220000
KS ci ratio: 3.398884e-01	ci left: 9.052806e-05	ci right 1.283062e-04	k: 132	n:1220000
STAC3   1220000 perm   883 sec   (1382 perm/sec)   p_kst 1.081967e-04   p_cons 3.039303e-01   p_joint 5.491803e-04

Joint ci ratio: 1.508394e-01	ci left: 5.073841e-04	ci right 5.909318e-04	k: 674	n:1230000
Cons ci ratio: 5.348821e-03	ci left: 3.031311e-01	ci right 3.047576e-01	k: 373851	n:1230000
KS ci ratio: 3.386178e-01	ci left: 9.053582e-05	ci right 1.281451e-04	k: 133	n:1230000
STAC3   1230000 perm   895 sec   (1374 perm/sec)   p_kst 1.081301e-04   p_cons 3.039439e-01   p_joint 5.479675e-04

Joint ci ratio: 1.497341e-01	ci left: 5.110536e-04	ci right 5.945337e-04	k: 684	n:1240000
Cons ci ratio: 5.326351e-03	ci left: 3.032025e-01	ci right 3.048226e-01	k: 376975	n:1240000
KS ci ratio: 3.361187e-01	ci left: 9.128198e-05	ci right 1.288607e-04	k: 135	n:1240000
STAC3   1240000 perm   908 sec   (1365 perm/sec)   p_kst 1.088710e-04   p_cons 3.040121e-01   p_joint 5.516129e-04

Joint ci ratio: 1.490825e-01	ci left: 5.115858e-04	ci right 5.947568e-04	k: 690	n:1250000
Cons ci ratio: 5.304894e-03	ci left: 3.032145e-01	ci right 3.048280e-01	k: 380026	n:1250000
KS ci ratio: 3.336740e-01	ci left: 9.201720e-05	ci right 1.295638e-04	k: 137	n:1250000
STAC3   1250000 perm   921 sec   (1357 perm/sec)   p_kst 1.096000e-04   p_cons 3.040208e-01   p_joint 5.520000e-04

Joint ci ratio: 1.520854e-01	ci left: 4.869038e-04	ci right 5.678018e-04	k: 663	n:1260000
Cons ci ratio: 5.284338e-03	ci left: 3.031747e-01	ci right 3.047818e-01	k: 383012	n:1260000
KS ci ratio: 3.324716e-01	ci left: 9.201419e-05	ci right 1.293953e-04	k: 138	n:1260000
STAC3   1260000 perm   934 sec   (1349 perm/sec)   p_kst 1.095238e-04   p_cons 3.039778e-01   p_joint 5.261905e-04

Joint ci ratio: 1.516294e-01	ci left: 4.860999e-04	ci right 5.666001e-04	k: 667	n:1270000
Cons ci ratio: 5.263598e-03	ci left: 3.031694e-01	ci right 3.047701e-01	k: 386041	n:1270000
KS ci ratio: 3.324717e-01	ci left: 9.128966e-05	ci right 1.283765e-04	k: 138	n:1270000
STAC3   1270000 perm   947 sec   (1342 perm/sec)   p_kst 1.086614e-04   p_cons 3.039693e-01   p_joint 5.251969e-04

Joint ci ratio: 1.509529e-01	ci left: 4.868123e-04	ci right 5.670383e-04	k: 673	n:1280000
Cons ci ratio: 5.242713e-03	ci left: 3.031954e-01	ci right 3.047899e-01	k: 389110	n:1280000
KS ci ratio: 3.312822e-01	ci left: 9.129262e-05	ci right 1.282196e-04	k: 139	n:1280000
STAC3   1280000 perm   959 sec   (1334 perm/sec)   p_kst 1.085937e-04   p_cons 3.039922e-01   p_joint 5.257812e-04

Joint ci ratio: 1.537162e-01	ci left: 4.651426e-04	ci right 5.433300e-04	k: 649	n:1290000
Cons ci ratio: 5.221472e-03	ci left: 3.032698e-01	ci right 3.048582e-01	k: 392242	n:1290000
KS ci ratio: 3.301054e-01	ci left: 9.129577e-05	ci right 1.280650e-04	k: 140	n:1290000
STAC3   1290000 perm   972 sec   (1326 perm/sec)   p_kst 1.085271e-04   p_cons 3.040636e-01   p_joint 5.031008e-04

Joint ci ratio: 1.554000e-01	ci left: 4.512116e-04	ci right 5.279654e-04	k: 635	n:1300000
Cons ci ratio: 5.200790e-03	ci left: 3.033185e-01	ci right 3.049008e-01	k: 395342	n:1300000
KS ci ratio: 3.301055e-01	ci left: 9.059349e-05	ci right 1.270799e-04	k: 140	n:1300000
STAC3   1300000 perm   985 sec   (1319 perm/sec)   p_kst 1.076923e-04   p_cons 3.041092e-01   p_joint 4.884615e-04

Joint ci ratio: 1.565122e-01	ci left: 4.411649e-04	ci right 5.167973e-04	k: 626	n:1310000
Cons ci ratio: 5.181220e-03	ci left: 3.032955e-01	ci right 3.048718e-01	k: 398349	n:1310000
KS ci ratio: 3.277889e-01	ci left: 9.130259e-05	ci right 1.277622e-04	k: 142	n:1310000
STAC3   1310000 perm   999 sec   (1312 perm/sec)   p_kst 1.083969e-04   p_cons 3.040832e-01   p_joint 4.778626e-04

Joint ci ratio: 1.561392e-01	ci left: 4.400065e-04	ci right 5.152437e-04	k: 629	n:1320000
Cons ci ratio: 5.161057e-03	ci left: 3.033395e-01	ci right 3.049098e-01	k: 401444	n:1320000
KS ci ratio: 3.266487e-01	ci left: 9.130625e-05	ci right 1.276139e-04	k: 143	n:1320000
STAC3   1320000 perm   1012 sec   (1305 perm/sec)   p_kst 1.083333e-04   p_cons 3.041242e-01   p_joint 4.765152e-04

Joint ci ratio: 1.556459e-01	ci left: 4.395884e-04	ci right 5.144945e-04	k: 633	n:1330000
Cons ci ratio: 5.141383e-03	ci left: 3.033618e-01	ci right 3.049263e-01	k: 404511	n:1330000
KS ci ratio: 3.266489e-01	ci left: 9.061974e-05	ci right 1.266544e-04	k: 143	n:1330000
STAC3   1330000 perm   1025 sec   (1298 perm/sec)   p_kst 1.075188e-04   p_cons 3.041436e-01   p_joint 4.759398e-04

Joint ci ratio: 1.567634e-01	ci left: 4.298538e-04	ci right 5.036764e-04	k: 624	n:1340000
Cons ci ratio: 5.121950e-03	ci left: 3.033823e-01	ci right 3.049409e-01	k: 407576	n:1340000
KS ci ratio: 3.266490e-01	ci left: 8.994346e-05	ci right 1.257092e-04	k: 143	n:1340000
STAC3   1340000 perm   1038 sec   (1291 perm/sec)   p_kst 1.067164e-04   p_cons 3.041612e-01   p_joint 4.656716e-04

Joint ci ratio: 1.568893e-01	ci left: 4.259580e-04	ci right 4.991758e-04	k: 623	n:1350000
Cons ci ratio: 5.102521e-03	ci left: 3.034203e-01	ci right 3.049732e-01	k: 410665	n:1350000
KS ci ratio: 3.266491e-01	ci left: 8.927721e-05	ci right 1.247780e-04	k: 143	n:1350000
STAC3   1350000 perm   1052 sec   (1284 perm/sec)   p_kst 1.059259e-04   p_cons 3.041963e-01   p_joint 4.614815e-04

Joint ci ratio: 1.560165e-01	ci left: 4.277715e-04	ci right 5.008538e-04	k: 630	n:1360000
Cons ci ratio: 5.083462e-03	ci left: 3.034452e-01	ci right 3.049924e-01	k: 413737	n:1360000
KS ci ratio: 3.244040e-01	ci left: 8.997119e-05	ci right 1.254509e-04	k: 145	n:1360000
STAC3   1360000 perm   1065 sec   (1277 perm/sec)   p_kst 1.066176e-04   p_cons 3.042184e-01   p_joint 4.632353e-04

Joint ci ratio: 1.556470e-01	ci left: 4.267535e-04	ci right 4.994730e-04	k: 633	n:1370000
Cons ci ratio: 5.064144e-03	ci left: 3.035092e-01	ci right 3.050508e-01	k: 416863	n:1370000
KS ci ratio: 3.232987e-01	ci left: 8.998507e-05	ci right 1.253242e-04	k: 146	n:1370000
STAC3   1370000 perm   1079 sec   (1270 perm/sec)   p_kst 1.065693e-04   p_cons 3.042796e-01   p_joint 4.620438e-04

Joint ci ratio: 1.561408e-01	ci left: 4.208755e-04	ci right 4.928422e-04	k: 629	n:1380000
Cons ci ratio: 5.045829e-03	ci left: 3.035063e-01	ci right 3.050423e-01	k: 419898	n:1380000
KS ci ratio: 3.211215e-01	ci left: 9.066508e-05	ci right 1.259822e-04	k: 148	n:1380000
STAC3   1380000 perm   1092 sec   (1264 perm/sec)   p_kst 1.072464e-04   p_cons 3.042739e-01   p_joint 4.557971e-04

Joint ci ratio: 1.557705e-01	ci left: 4.199216e-04	ci right 4.915391e-04	k: 632	n:1390000
Cons ci ratio: 5.027037e-03	ci left: 3.035603e-01	ci right 3.050909e-01	k: 423012	n:1390000
KS ci ratio: 3.211216e-01	ci left: 9.001281e-05	ci right 1.250758e-04	k: 148	n:1390000
STAC3   1390000 perm   1106 sec   (1257 perm/sec)   p_kst 1.064748e-04   p_cons 3.043252e-01   p_joint 4.546763e-04

Joint ci ratio: 1.556478e-01	ci left: 4.176086e-04	ci right 4.887702e-04	k: 633	n:1400000
Cons ci ratio: 5.009045e-03	ci left: 3.035636e-01	ci right 3.050887e-01	k: 426056	n:1400000
KS ci ratio: 3.168958e-01	ci left: 9.199828e-05	ci right 1.272676e-04	k: 152	n:1400000
STAC3   1400000 perm   1120 sec   (1250 perm/sec)   p_kst 1.085714e-04   p_cons 3.043257e-01   p_joint 4.521429e-04

Joint ci ratio: 1.552809e-01	ci left: 4.166917e-04	ci right 4.875142e-04	k: 636	n:1410000
Cons ci ratio: 4.991579e-03	ci left: 3.035385e-01	ci right 3.050581e-01	k: 429060	n:1410000
KS ci ratio: 3.168959e-01	ci left: 9.134581e-05	ci right 1.263650e-04	k: 152	n:1410000
STAC3   1410000 perm   1134 sec   (1244 perm/sec)   p_kst 1.078014e-04   p_cons 3.042979e-01   p_joint 4.510638e-04

Joint ci ratio: 1.546750e-01	ci left: 4.171419e-04	ci right 4.877385e-04	k: 641	n:1420000
Cons ci ratio: 4.974204e-03	ci left: 3.035215e-01	ci right 3.050357e-01	k: 432075	n:1420000
KS ci ratio: 3.168960e-01	ci left: 9.070252e-05	ci right 1.254751e-04	k: 152	n:1420000
STAC3   1420000 perm   1149 sec   (1236 perm/sec)   p_kst 1.070423e-04   p_cons 3.042782e-01   p_joint 4.514085e-04

Joint ci ratio: 1.541954e-01	ci left: 4.169139e-04	ci right 4.872330e-04	k: 645	n:1430000
Cons ci ratio: 4.956615e-03	ci left: 3.035382e-01	ci right 3.050472e-01	k: 435138	n:1430000
KS ci ratio: 3.158655e-01	ci left: 9.071202e-05	ci right 1.253523e-04	k: 153	n:1430000
STAC3   1430000 perm   1164 sec   (1229 perm/sec)   p_kst 1.069930e-04   p_cons 3.042923e-01   p_joint 4.510490e-04

Joint ci ratio: 1.534842e-01	ci left: 4.180250e-04	ci right 4.881763e-04	k: 651	n:1440000
Cons ci ratio: 4.939788e-03	ci left: 3.035055e-01	ci right 3.050092e-01	k: 438130	n:1440000
KS ci ratio: 3.158656e-01	ci left: 9.008207e-05	ci right 1.244818e-04	k: 153	n:1440000
STAC3   1440000 perm   1178 sec   (1222 perm/sec)   p_kst 1.062500e-04   p_cons 3.042569e-01   p_joint 4.520833e-04

Joint ci ratio: 1.525510e-01	ci left: 4.204481e-04	ci right 4.905379e-04	k: 659	n:1450000
Cons ci ratio: 4.921374e-03	ci left: 3.036242e-01	ci right 3.051228e-01	k: 441341	n:1450000
KS ci ratio: 3.118414e-01	ci left: 9.200220e-05	ci right 1.265984e-04	k: 157	n:1450000
STAC3   1450000 perm   1193 sec   (1216 perm/sec)   p_kst 1.082759e-04   p_cons 3.043731e-01   p_joint 4.544828e-04

Joint ci ratio: 1.520909e-01	ci left: 4.202036e-04	ci right 4.900221e-04	k: 663	n:1460000
Cons ci ratio: 4.904719e-03	ci left: 3.036071e-01	ci right 3.051005e-01	k: 444356	n:1460000
KS ci ratio: 3.118415e-01	ci left: 9.137204e-05	ci right 1.257313e-04	k: 157	n:1460000
STAC3   1460000 perm   1207 sec   (1209 perm/sec)   p_kst 1.075342e-04   p_cons 3.043534e-01   p_joint 4.541096e-04

Joint ci ratio: 1.515214e-01	ci left: 4.206172e-04	ci right 4.902191e-04	k: 668	n:1470000
Cons ci ratio: 4.888052e-03	ci left: 3.036059e-01	ci right 3.050942e-01	k: 447394	n:1470000
KS ci ratio: 3.089223e-01	ci left: 9.263235e-05	ci right 1.270753e-04	k: 160	n:1470000
STAC3   1470000 perm   1222 sec   (1203 perm/sec)   p_kst 1.088435e-04   p_cons 3.043497e-01   p_joint 4.544218e-04

Joint ci ratio: 1.509583e-01	ci left: 4.210257e-04	ci right 4.904129e-04	k: 673	n:1480000
Cons ci ratio: 4.871102e-03	ci left: 3.036438e-01	ci right 3.051272e-01	k: 450490	n:1480000
KS ci ratio: 3.089224e-01	ci left: 9.200645e-05	ci right 1.262167e-04	k: 160	n:1480000
STAC3   1480000 perm   1237 sec   (1197 perm/sec)   p_kst 1.081081e-04   p_cons 3.043851e-01   p_joint 4.547297e-04

Joint ci ratio: 1.512958e-01	ci left: 4.162627e-04	ci right 4.850321e-04	k: 670	n:1490000
Cons ci ratio: 4.854750e-03	ci left: 3.036444e-01	ci right 3.051228e-01	k: 453531	n:1490000
KS ci ratio: 3.089225e-01	ci left: 9.138896e-05	ci right 1.253696e-04	k: 160	n:1490000
STAC3   1490000 perm   1251 sec   (1191 perm/sec)   p_kst 1.073826e-04   p_cons 3.043832e-01   p_joint 4.496644e-04

Joint ci ratio: 1.512960e-01	ci left: 4.134876e-04	ci right 4.817986e-04	k: 670	n:1500000
Cons ci ratio: 4.838418e-03	ci left: 3.036577e-01	ci right 3.051311e-01	k: 456591	n:1500000
KS ci ratio: 3.060837e-01	ci left: 9.262541e-05	ci right 1.266876e-04	k: 163	n:1500000
STAC3   1500000 perm   1266 sec   (1185 perm/sec)   p_kst 1.086667e-04   p_cons 3.043940e-01   p_joint 4.466667e-04

Joint ci ratio: 1.507354e-01	ci left: 4.139354e-04	ci right 4.820442e-04	k: 675	n:1510000
Cons ci ratio: 4.822807e-03	ci left: 3.036218e-01	ci right 3.050902e-01	k: 459577	n:1510000
KS ci ratio: 3.033218e-01	ci left: 9.384688e-05	ci right 1.279868e-04	k: 166	n:1510000
STAC3   1510000 perm   1281 sec   (1179 perm/sec)   p_kst 1.099338e-04   p_cons 3.043556e-01   p_joint 4.470199e-04

Joint ci ratio: 1.504021e-01	ci left: 4.131114e-04	ci right 4.809209e-04	k: 678	n:1520000
Cons ci ratio: 4.806808e-03	ci left: 3.036337e-01	ci right 3.050973e-01	k: 462635	n:1520000
KS ci ratio: 3.015216e-01	ci left: 9.444544e-05	ci right 1.285601e-04	k: 168	n:1520000
STAC3   1520000 perm   1295 sec   (1173 perm/sec)   p_kst 1.105263e-04   p_cons 3.043651e-01   p_joint 4.460526e-04

Joint ci ratio: 1.494149e-01	ci left: 4.160731e-04	ci right 4.838804e-04	k: 687	n:1530000
Cons ci ratio: 4.791175e-03	ci left: 3.036272e-01	ci right 3.050860e-01	k: 465665	n:1530000
KS ci ratio: 3.006335e-01	ci left: 9.443238e-05	ci right 1.284226e-04	k: 169	n:1530000
STAC3   1530000 perm   1310 sec   (1167 perm/sec)   p_kst 1.104575e-04   p_cons 3.043562e-01   p_joint 4.490196e-04

Joint ci ratio: 1.489825e-01	ci left: 4.158718e-04	ci right 4.834326e-04	k: 691	n:1540000
Cons ci ratio: 4.776067e-03	ci left: 3.035876e-01	ci right 3.050417e-01	k: 468644	n:1540000
KS ci ratio: 2.997532e-01	ci left: 9.441963e-05	ci right 1.282868e-04	k: 170	n:1540000
STAC3   1540000 perm   1326 sec   (1162 perm/sec)   p_kst 1.103896e-04   p_cons 3.043143e-01   p_joint 4.487013e-04

Joint ci ratio: 1.487678e-01	ci left: 4.144310e-04	ci right 4.816521e-04	k: 693	n:1550000
Cons ci ratio: 4.760868e-03	ci left: 3.035693e-01	ci right 3.050186e-01	k: 471655	n:1550000
KS ci ratio: 2.988805e-01	ci left: 9.440719e-05	ci right 1.281526e-04	k: 171	n:1550000
STAC3   1550000 perm   1341 sec   (1156 perm/sec)   p_kst 1.103226e-04   p_cons 3.042935e-01   p_joint 4.470968e-04

Joint ci ratio: 1.483409e-01	ci left: 4.142432e-04	ci right 4.812239e-04	k: 697	n:1560000
Cons ci ratio: 4.745318e-03	ci left: 3.035953e-01	ci right 3.050400e-01	k: 474735	n:1560000
KS ci ratio: 2.980155e-01	ci left: 9.439506e-05	ci right 1.280200e-04	k: 172	n:1560000
STAC3   1560000 perm   1356 sec   (1150 perm/sec)   p_kst 1.102564e-04   p_cons 3.043173e-01   p_joint 4.467949e-04

Joint ci ratio: 1.477074e-01	ci left: 4.152848e-04	ci right 4.821218e-04	k: 703	n:1570000
Cons ci ratio: 4.729657e-03	ci left: 3.036446e-01	ci right 3.050848e-01	k: 477852	n:1570000
KS ci ratio: 2.980156e-01	ci left: 9.379381e-05	ci right 1.272046e-04	k: 172	n:1570000
STAC3   1570000 perm   1372 sec   (1145 perm/sec)   p_kst 1.095541e-04   p_cons 3.043643e-01   p_joint 4.477707e-04

Joint ci ratio: 1.472896e-01	ci left: 4.150946e-04	ci right 4.816955e-04	k: 707	n:1580000
Cons ci ratio: 4.714811e-03	ci left: 3.036338e-01	ci right 3.050694e-01	k: 480875	n:1580000
KS ci ratio: 2.980157e-01	ci left: 9.320017e-05	ci right 1.263995e-04	k: 172	n:1580000
STAC3   1580000 perm   1387 sec   (1139 perm/sec)   p_kst 1.088608e-04   p_cons 3.043513e-01   p_joint 4.474684e-04

Joint ci ratio: 1.560217e-01	ci left: 3.658917e-04	ci right 4.284044e-04	k: 630	n:1590000
Cons ci ratio: 4.700014e-03	ci left: 3.036314e-01	ci right 3.050624e-01	k: 483911	n:1590000
KS ci ratio: 2.971581e-01	ci left: 9.319599e-05	ci right 1.262803e-04	k: 173	n:1590000
STAC3   1590000 perm   1403 sec   (1134 perm/sec)   p_kst 1.088050e-04   p_cons 3.043465e-01   p_joint 3.962264e-04

Joint ci ratio: 1.551633e-01	ci left: 3.678096e-04	ci right 4.302720e-04	k: 637	n:1600000
Cons ci ratio: 4.684843e-03	ci left: 3.036752e-01	ci right 3.051018e-01	k: 487021	n:1600000
KS ci ratio: 2.946289e-01	ci left: 9.434937e-05	ci right 1.275048e-04	k: 176	n:1600000
STAC3   1600000 perm   1418 sec   (1128 perm/sec)   p_kst 1.100000e-04   p_cons 3.043881e-01   p_joint 3.981250e-04

Joint ci ratio: 1.546792e-01	ci left: 3.679132e-04	ci right 4.301802e-04	k: 641	n:1610000
Cons ci ratio: 4.670031e-03	ci left: 3.036992e-01	ci right 3.051214e-01	k: 490100	n:1610000
KS ci ratio: 2.946290e-01	ci left: 9.376334e-05	ci right 1.267129e-04	k: 176	n:1610000
STAC3   1610000 perm   1434 sec   (1122 perm/sec)   p_kst 1.093168e-04   p_cons 3.044099e-01   p_joint 3.981366e-04

Joint ci ratio: 1.541995e-01	ci left: 3.680159e-04	ci right 4.300893e-04	k: 645	n:1620000
Cons ci ratio: 4.655833e-03	ci left: 3.036797e-01	ci right 3.050975e-01	k: 493109	n:1620000
KS ci ratio: 2.938002e-01	ci left: 9.375629e-05	ci right 1.265934e-04	k: 177	n:1620000
STAC3   1620000 perm   1450 sec   (1117 perm/sec)   p_kst 1.092593e-04   p_cons 3.043883e-01   p_joint 3.981481e-04

Joint ci ratio: 1.541997e-01	ci left: 3.657581e-04	ci right 4.274507e-04	k: 645	n:1630000
Cons ci ratio: 4.641791e-03	ci left: 3.036581e-01	ci right 3.050715e-01	k: 496114	n:1630000
KS ci ratio: 2.938003e-01	ci left: 9.318109e-05	ci right 1.258168e-04	k: 177	n:1630000
STAC3   1630000 perm   1466 sec   (1112 perm/sec)   p_kst 1.085890e-04   p_cons 3.043644e-01   p_joint 3.957055e-04

Joint ci ratio: 1.540807e-01	ci left: 3.641140e-04	ci right 4.254776e-04	k: 646	n:1640000
Cons ci ratio: 4.627775e-03	ci left: 3.036458e-01	ci right 3.050549e-01	k: 499134	n:1640000
KS ci ratio: 2.938004e-01	ci left: 9.261291e-05	ci right 1.250496e-04	k: 177	n:1640000
STAC3   1640000 perm   1482 sec   (1107 perm/sec)   p_kst 1.079268e-04   p_cons 3.043500e-01   p_joint 3.939024e-04

Joint ci ratio: 1.534887e-01	ci left: 3.648210e-04	ci right 4.260458e-04	k: 651	n:1650000
Cons ci ratio: 4.613892e-03	ci left: 3.036331e-01	ci right 3.050379e-01	k: 502153	n:1650000
KS ci ratio: 2.921635e-01	ci left: 9.317467e-05	ci right 1.255927e-04	k: 179	n:1650000
STAC3   1650000 perm   1498 sec   (1101 perm/sec)   p_kst 1.084848e-04   p_cons 3.043352e-01   p_joint 3.945455e-04

Joint ci ratio: 1.526712e-01	ci left: 3.666787e-04	ci right 4.278575e-04	k: 658	n:1660000
Cons ci ratio: 4.599682e-03	ci left: 3.036621e-01	ci right 3.050627e-01	k: 505241	n:1660000
KS ci ratio: 2.905537e-01	ci left: 9.373016e-05	ci right 1.261287e-04	k: 181	n:1660000
STAC3   1660000 perm   1514 sec   (1096 perm/sec)   p_kst 1.090361e-04   p_cons 3.043620e-01   p_joint 3.963855e-04

Joint ci ratio: 1.518666e-01	ci left: 3.685149e-04	ci right 4.296466e-04	k: 665	n:1670000
Cons ci ratio: 4.586043e-03	ci left: 3.036501e-01	ci right 3.050464e-01	k: 508261	n:1670000
KS ci ratio: 2.881881e-01	ci left: 9.483495e-05	ci right 1.272998e-04	k: 184	n:1670000
STAC3   1670000 perm   1530 sec   (1091 perm/sec)   p_kst 1.101796e-04   p_cons 3.043479e-01   p_joint 3.982036e-04

Joint ci ratio: 1.524403e-01	ci left: 3.634584e-04	ci right 4.239999e-04	k: 660	n:1680000
Cons ci ratio: 4.571965e-03	ci left: 3.036899e-01	ci right 3.050822e-01	k: 511368	n:1680000
KS ci ratio: 2.866428e-01	ci left: 9.537513e-05	ci right 1.278182e-04	k: 186	n:1680000
STAC3   1680000 perm   1546 sec   (1086 perm/sec)   p_kst 1.107143e-04   p_cons 3.043857e-01   p_joint 3.928571e-04

Joint ci ratio: 1.522103e-01	ci left: 3.624461e-04	ci right 4.227195e-04	k: 662	n:1690000
Cons ci ratio: 4.558004e-03	ci left: 3.037305e-01	ci right 3.051187e-01	k: 514477	n:1690000
KS ci ratio: 2.858794e-01	ci left: 9.536002e-05	ci right 1.276959e-04	k: 187	n:1690000
STAC3   1690000 perm   1563 sec   (1082 perm/sec)   p_kst 1.106509e-04   p_cons 3.044243e-01   p_joint 3.917160e-04

Joint ci ratio: 1.543205e-01	ci left: 3.501317e-04	ci right 4.092392e-04	k: 644	n:1700000
Cons ci ratio: 4.544403e-03	ci left: 3.037489e-01	ci right 3.051330e-01	k: 517549	n:1700000
KS ci ratio: 2.851221e-01	ci left: 9.534520e-05	ci right 1.275750e-04	k: 188	n:1700000
STAC3   1700000 perm   1579 sec   (1076 perm/sec)   p_kst 1.105882e-04   p_cons 3.044406e-01   p_joint 3.788235e-04

Joint ci ratio: 1.537258e-01	ci left: 3.508954e-04	ci right 4.098825e-04	k: 649	n:1710000
Cons ci ratio: 4.531417e-03	ci left: 3.037209e-01	ci right 3.051008e-01	k: 520542	n:1710000
KS ci ratio: 2.851222e-01	ci left: 9.478762e-05	ci right 1.268290e-04	k: 188	n:1710000
STAC3   1710000 perm   1596 sec   (1071 perm/sec)   p_kst 1.099415e-04   p_cons 3.044105e-01   p_joint 3.795322e-04

Joint ci ratio: 1.896785e-01	ci left: 2.247130e-04	ci right 2.723451e-04	k: 426	n:1720000
Cons ci ratio: 4.518127e-03	ci left: 3.037321e-01	ci right 3.051081e-01	k: 523602	n:1720000
KS ci ratio: 2.843709e-01	ci left: 9.477641e-05	ci right 1.267144e-04	k: 189	n:1720000
STAC3   1720000 perm   1613 sec   (1067 perm/sec)   p_kst 1.098837e-04   p_cons 3.044198e-01   p_joint 2.476744e-04

Joint ci ratio: 1.894569e-01	ci left: 2.239647e-04	ci right 2.713763e-04	k: 427	n:1730000
Cons ci ratio: 4.504608e-03	ci left: 3.037756e-01	ci right 3.051476e-01	k: 526718	n:1730000
KS ci ratio: 2.836255e-01	ci left: 9.476544e-05	ci right 1.266010e-04	k: 190	n:1730000
STAC3   1730000 perm   1630 sec   (1062 perm/sec)   p_kst 1.098266e-04   p_cons 3.044613e-01   p_joint 2.468208e-04

Joint ci ratio: 1.892360e-01	ci left: 2.232250e-04	ci right 2.704186e-04	k: 428	n:1740000
Cons ci ratio: 4.491966e-03	ci left: 3.037473e-01	ci right 3.051154e-01	k: 529710	n:1740000
KS ci ratio: 2.836256e-01	ci left: 9.422080e-05	ci right 1.258734e-04	k: 190	n:1740000
STAC3   1740000 perm   1646 sec   (1057 perm/sec)   p_kst 1.091954e-04   p_cons 3.044310e-01   p_joint 2.459770e-04

Joint ci ratio: 1.885778e-01	ci left: 2.235827e-04	ci right 2.706686e-04	k: 431	n:1750000
Cons ci ratio: 4.479218e-03	ci left: 3.037394e-01	ci right 3.051035e-01	k: 532737	n:1750000
KS ci ratio: 2.821521e-01	ci left: 9.474419e-05	ci right 1.263779e-04	k: 192	n:1750000
STAC3   1750000 perm   1663 sec   (1052 perm/sec)   p_kst 1.097143e-04   p_cons 3.044211e-01   p_joint 2.462857e-04

Joint ci ratio: 1.881428e-01	ci left: 2.233951e-04	ci right 2.703206e-04	k: 433	n:1760000
Cons ci ratio: 4.466428e-03	ci left: 3.037458e-01	ci right 3.051060e-01	k: 535789	n:1760000
KS ci ratio: 2.821522e-01	ci left: 9.420587e-05	ci right 1.256598e-04	k: 192	n:1760000
STAC3   1760000 perm   1680 sec   (1047 perm/sec)   p_kst 1.090909e-04   p_cons 3.044256e-01   p_joint 2.460227e-04

Joint ci ratio: 1.874958e-01	ci left: 2.237482e-04	ci right 2.705679e-04	k: 436	n:1770000
Cons ci ratio: 4.454389e-03	ci left: 3.036911e-01	ci right 3.050474e-01	k: 538733	n:1770000
KS ci ratio: 2.814241e-01	ci left: 9.419868e-05	ci right 1.255547e-04	k: 193	n:1770000
STAC3   1770000 perm   1698 sec   (1043 perm/sec)   p_kst 1.090395e-04   p_cons 3.043689e-01   p_joint 2.463277e-04

Joint ci ratio: 1.866435e-01	ci left: 2.246332e-04	ci right 2.714001e-04	k: 440	n:1780000
Cons ci ratio: 4.441805e-03	ci left: 3.036982e-01	ci right 3.050507e-01	k: 541786	n:1780000
KS ci ratio: 2.799845e-01	ci left: 9.471399e-05	ci right 1.260518e-04	k: 195	n:1780000
STAC3   1780000 perm   1715 sec   (1038 perm/sec)   p_kst 1.095506e-04   p_cons 3.043742e-01   p_joint 2.471910e-04

Joint ci ratio: 1.860118e-01	ci left: 2.249760e-04	ci right 2.716380e-04	k: 443	n:1790000
Cons ci ratio: 4.429273e-03	ci left: 3.037103e-01	ci right 3.050590e-01	k: 544848	n:1790000
KS ci ratio: 2.792730e-01	ci left: 9.470435e-05	ci right 1.259453e-04	k: 196	n:1790000
STAC3   1790000 perm   1732 sec   (1033 perm/sec)   p_kst 1.094972e-04   p_cons 3.043844e-01   p_joint 2.474860e-04

Joint ci ratio: 1.860120e-01	ci left: 2.237262e-04	ci right 2.701289e-04	k: 443	n:1800000
Cons ci ratio: 4.416459e-03	ci left: 3.037595e-01	ci right 3.051045e-01	k: 547977	n:1800000
KS ci ratio: 2.792731e-01	ci left: 9.417821e-05	ci right 1.252456e-04	k: 196	n:1800000
STAC3   1800000 perm   1750 sec   (1029 perm/sec)   p_kst 1.088889e-04   p_cons 3.044317e-01   p_joint 2.461111e-04

Joint ci ratio: 1.851796e-01	ci left: 2.245974e-04	ci right 2.709490e-04	k: 447	n:1810000
Cons ci ratio: 4.404640e-03	ci left: 3.037230e-01	ci right 3.050643e-01	k: 550952	n:1810000
KS ci ratio: 2.778661e-01	ci left: 9.468569e-05	ci right 1.257356e-04	k: 198	n:1810000
STAC3   1810000 perm   1767 sec   (1024 perm/sec)   p_kst 1.093923e-04   p_cons 3.043934e-01   p_joint 2.469613e-04

Joint ci ratio: 1.845627e-01	ci left: 2.249354e-04	ci right 2.711848e-04	k: 450	n:1820000
Cons ci ratio: 4.392375e-03	ci left: 3.037392e-01	ci right 3.050768e-01	k: 554022	n:1820000
KS ci ratio: 2.771706e-01	ci left: 9.467665e-05	ci right 1.256324e-04	k: 199	n:1820000
STAC3   1820000 perm   1784 sec   (1020 perm/sec)   p_kst 1.093407e-04   p_cons 3.044077e-01   p_joint 2.472527e-04

Joint ci ratio: 1.833469e-01	ci left: 2.268340e-04	ci right 2.731324e-04	k: 456	n:1830000
Cons ci ratio: 4.380120e-03	ci left: 3.037639e-01	ci right 3.050979e-01	k: 557108	n:1830000
KS ci ratio: 2.757949e-01	ci left: 9.517643e-05	ci right 1.261143e-04	k: 201	n:1830000
STAC3   1830000 perm   1802 sec   (1016 perm/sec)   p_kst 1.098361e-04   p_cons 3.044306e-01   p_joint 2.491803e-04

Joint ci ratio: 1.833470e-01	ci left: 2.256012e-04	ci right 2.716480e-04	k: 456	n:1840000
Cons ci ratio: 4.367839e-03	ci left: 3.038009e-01	ci right 3.051313e-01	k: 560217	n:1840000
KS ci ratio: 2.757950e-01	ci left: 9.465917e-05	ci right 1.254289e-04	k: 201	n:1840000
STAC3   1840000 perm   1820 sec   (1011 perm/sec)   p_kst 1.092391e-04   p_cons 3.044658e-01   p_joint 2.478261e-04

Joint ci ratio: 1.823521e-01	ci left: 2.269607e-04	ci right 2.730058e-04	k: 461	n:1850000
Cons ci ratio: 4.356227e-03	ci left: 3.037823e-01	ci right 3.051091e-01	k: 563224	n:1850000
KS ci ratio: 2.751149e-01	ci left: 9.465071e-05	ci right 1.253287e-04	k: 202	n:1850000
STAC3   1850000 perm   1838 sec   (1007 perm/sec)   p_kst 1.091892e-04   p_cons 3.044454e-01   p_joint 2.491892e-04

Joint ci ratio: 1.819587e-01	ci left: 2.267668e-04	ci right 2.726623e-04	k: 463	n:1860000
Cons ci ratio: 4.345133e-03	ci left: 3.037226e-01	ci right 3.050457e-01	k: 566154	n:1860000
KS ci ratio: 2.751150e-01	ci left: 9.414183e-05	ci right 1.246549e-04	k: 202	n:1860000
STAC3   1860000 perm   1856 sec   (1002 perm/sec)   p_kst 1.086022e-04   p_cons 3.043839e-01   p_joint 2.489247e-04

Joint ci ratio: 1.877120e-01	ci left: 2.112733e-04	ci right 2.555393e-04	k: 435	n:1870000
Cons ci ratio: 4.333848e-03	ci left: 3.036903e-01	ci right 3.050098e-01	k: 569134	n:1870000
KS ci ratio: 2.731042e-01	ci left: 9.513243e-05	ci right 1.257025e-04	k: 205	n:1870000
STAC3   1870000 perm   1873 sec   (998 perm/sec)   p_kst 1.096257e-04   p_cons 3.043497e-01   p_joint 2.326203e-04

Joint ci ratio: 1.874972e-01	ci left: 2.106564e-04	ci right 2.547369e-04	k: 436	n:1880000
Cons ci ratio: 4.322179e-03	ci left: 3.037045e-01	ci right 3.050205e-01	k: 572201	n:1880000
KS ci ratio: 2.731043e-01	ci left: 9.462640e-05	ci right 1.250339e-04	k: 205	n:1880000
STAC3   1880000 perm   1891 sec   (994 perm/sec)   p_kst 1.090426e-04   p_cons 3.043622e-01   p_joint 2.319149e-04

Joint ci ratio: 1.870696e-01	ci left: 2.105504e-04	ci right 2.544969e-04	k: 438	n:1890000
Cons ci ratio: 4.310717e-03	ci left: 3.037075e-01	ci right 3.050201e-01	k: 575247	n:1890000
KS ci ratio: 2.731044e-01	ci left: 9.412573e-05	ci right 1.243724e-04	k: 205	n:1890000
STAC3   1890000 perm   1909 sec   (990 perm/sec)   p_kst 1.084656e-04   p_cons 3.043635e-01   p_joint 2.317460e-04

Joint ci ratio: 1.866450e-01	ci left: 2.104457e-04	ci right 2.542593e-04	k: 440	n:1900000
Cons ci ratio: 4.299185e-03	ci left: 3.037263e-01	ci right 3.050354e-01	k: 578323	n:1900000
KS ci ratio: 2.724439e-01	ci left: 9.412066e-05	ci right 1.242800e-04	k: 206	n:1900000
STAC3   1900000 perm   1927 sec   (986 perm/sec)   p_kst 1.084211e-04   p_cons 3.043805e-01   p_joint 2.315789e-04

Joint ci ratio: 1.862232e-01	ci left: 2.103421e-04	ci right 2.540240e-04	k: 442	n:1910000
Cons ci ratio: 4.287639e-03	ci left: 3.037553e-01	ci right 3.050610e-01	k: 581419	n:1910000
KS ci ratio: 2.717882e-01	ci left: 9.411572e-05	ci right 1.241885e-04	k: 207	n:1910000
STAC3   1910000 perm   1945 sec   (982 perm/sec)   p_kst 1.083770e-04   p_cons 3.044079e-01   p_joint 2.314136e-04

Joint ci ratio: 1.853880e-01	ci left: 2.112330e-04	ci right 2.548811e-04	k: 446	n:1920000
Cons ci ratio: 4.276486e-03	ci left: 3.037544e-01	ci right 3.050566e-01	k: 584458	n:1920000
KS ci ratio: 2.698490e-01	ci left: 9.508196e-05	ci right 1.252100e-04	k: 210	n:1920000
STAC3   1920000 perm   1963 sec   (978 perm/sec)   p_kst 1.093750e-04   p_cons 3.044052e-01   p_joint 2.322917e-04

Joint ci ratio: 1.841560e-01	ci left: 2.131036e-04	ci right 2.568128e-04	k: 452	n:1930000
Cons ci ratio: 4.265847e-03	ci left: 3.037110e-01	ci right 3.050098e-01	k: 587415	n:1930000
KS ci ratio: 2.673268e-01	ci left: 9.652231e-05	ci right 1.267730e-04	k: 214	n:1930000
STAC3   1930000 perm   1981 sec   (974 perm/sec)   p_kst 1.108808e-04   p_cons 3.043601e-01   p_joint 2.341969e-04

Joint ci ratio: 1.833482e-01	ci left: 2.139721e-04	ci right 2.576456e-04	k: 456	n:1940000
Cons ci ratio: 4.254846e-03	ci left: 3.037118e-01	ci right 3.050073e-01	k: 590457	n:1940000
KS ci ratio: 2.660920e-01	ci left: 9.698678e-05	ci right 1.272192e-04	k: 216	n:1940000
STAC3   1940000 perm   2000 sec   (970 perm/sec)   p_kst 1.113402e-04   p_cons 3.043593e-01   p_joint 2.350515e-04

Joint ci ratio: 1.827493e-01	ci left: 2.143428e-04	ci right 2.579333e-04	k: 459	n:1950000
Cons ci ratio: 4.243848e-03	ci left: 3.037209e-01	ci right 3.050130e-01	k: 593515	n:1950000
KS ci ratio: 2.648741e-01	ci left: 9.744680e-05	ci right 1.276606e-04	k: 218	n:1950000
STAC3   1950000 perm   2018 sec   (966 perm/sec)   p_kst 1.117949e-04   p_cons 3.043667e-01   p_joint 2.353846e-04

Joint ci ratio: 1.815689e-01	ci left: 2.161709e-04	ci right 2.598179e-04	k: 465	n:1960000
Cons ci ratio: 4.232981e-03	ci left: 3.037252e-01	ci right 3.050141e-01	k: 596564	n:1960000
KS ci ratio: 2.630782e-01	ci left: 9.837897e-05	ci right 1.286409e-04	k: 221	n:1960000
STAC3   1960000 perm   2037 sec   (962 perm/sec)   p_kst 1.127551e-04   p_cons 3.043694e-01   p_joint 2.372449e-04

Joint ci ratio: 1.811805e-01	ci left: 2.160427e-04	ci right 2.595603e-04	k: 467	n:1970000
Cons ci ratio: 4.222202e-03	ci left: 3.037291e-01	ci right 3.050147e-01	k: 599612	n:1970000
KS ci ratio: 2.624877e-01	ci left: 9.835376e-05	ci right 1.285289e-04	k: 222	n:1970000
STAC3   1970000 perm   2055 sec   (959 perm/sec)   p_kst 1.126904e-04   p_cons 3.043716e-01   p_joint 2.370558e-04

Joint ci ratio: 1.802202e-01	ci left: 2.173626e-04	ci right 2.608887e-04	k: 472	n:1980000
Cons ci ratio: 4.211581e-03	ci left: 3.037253e-01	ci right 3.050076e-01	k: 602645	n:1980000
KS ci ratio: 2.613184e-01	ci left: 9.880082e-05	ci right 1.289560e-04	k: 224	n:1980000
STAC3   1980000 perm   2074 sec   (955 perm/sec)   p_kst 1.131313e-04   p_cons 3.043662e-01   p_joint 2.383838e-04

Joint ci ratio: 1.802203e-01	ci left: 2.162704e-04	ci right 2.595777e-04	k: 472	n:1990000
Cons ci ratio: 4.201068e-03	ci left: 3.037185e-01	ci right 3.049976e-01	k: 605672	n:1990000
KS ci ratio: 2.613185e-01	ci left: 9.830433e-05	ci right 1.283080e-04	k: 224	n:1990000
STAC3   1990000 perm   2093 sec   (951 perm/sec)   p_kst 1.125628e-04   p_cons 3.043578e-01   p_joint 2.371859e-04

Joint ci ratio: 1.796515e-01	ci left: 2.166214e-04	ci right 2.598473e-04	k: 475	n:2000000
Cons ci ratio: 4.190664e-03	ci left: 3.037088e-01	ci right 3.049847e-01	k: 608693	n:2000000
KS ci ratio: 2.613186e-01	ci left: 9.781281e-05	ci right 1.276664e-04	k: 224	n:2000000
STAC3   2000000 perm   2111 sec   (947 perm/sec)   p_kst 1.120000e-04   p_cons 3.043465e-01   p_joint 2.375000e-04

Joint ci ratio: 1.794631e-01	ci left: 2.160189e-04	ci right 2.590744e-04	k: 476	n:2010000
Cons ci ratio: 4.180278e-03	ci left: 3.037052e-01	ci right 3.049779e-01	k: 611726	n:2010000
KS ci ratio: 2.613186e-01	ci left: 9.732617e-05	ci right 1.270313e-04	k: 224	n:2010000
STAC3   2010000 perm   2131 sec   (943 perm/sec)   p_kst 1.114428e-04   p_cons 3.043413e-01   p_joint 2.368159e-04

Joint ci ratio: 1.790881e-01	ci left: 2.158951e-04	ci right 2.588264e-04	k: 478	n:2020000
Cons ci ratio: 4.169759e-03	ci left: 3.037229e-01	ci right 3.049925e-01	k: 614802	n:2020000
KS ci ratio: 2.601649e-01	ci left: 9.776975e-05	ci right 1.274571e-04	k: 226	n:2020000
STAC3   2020000 perm   2150 sec   (940 perm/sec)   p_kst 1.118812e-04   p_cons 3.043574e-01   p_joint 2.366337e-04

Joint ci ratio: 1.783449e-01	ci left: 2.167139e-04	ci right 2.596098e-04	k: 482	n:2030000
Cons ci ratio: 4.159329e-03	ci left: 3.037395e-01	ci right 3.050059e-01	k: 617876	n:2030000
KS ci ratio: 2.595937e-01	ci left: 9.774865e-05	ci right 1.273538e-04	k: 227	n:2030000
STAC3   2030000 perm   2169 sec   (936 perm/sec)   p_kst 1.118227e-04   p_cons 3.043724e-01   p_joint 2.374384e-04

Joint ci ratio: 1.777936e-01	ci left: 2.170566e-04	ci right 2.598733e-04	k: 485	n:2040000
Cons ci ratio: 4.149078e-03	ci left: 3.037456e-01	ci right 3.050089e-01	k: 620929	n:2040000
KS ci ratio: 2.590263e-01	ci left: 9.772783e-05	ci right 1.272515e-04	k: 228	n:2040000
STAC3   2040000 perm   2188 sec   (932 perm/sec)   p_kst 1.117647e-04   p_cons 3.043770e-01   p_joint 2.377451e-04

Joint ci ratio: 1.800307e-01	ci left: 2.104062e-04	ci right 2.524902e-04	k: 473	n:2050000
Cons ci ratio: 4.138859e-03	ci left: 3.037560e-01	ci right 3.050163e-01	k: 623991	n:2050000
KS ci ratio: 2.590264e-01	ci left: 9.725111e-05	ci right 1.266308e-04	k: 228	n:2050000
STAC3   2050000 perm   2208 sec   (929 perm/sec)   p_kst 1.112195e-04   p_cons 3.043859e-01   p_joint 2.307317e-04

Joint ci ratio: 1.787157e-01	ci left: 2.126304e-04	ci right 2.548150e-04	k: 480	n:2060000
Cons ci ratio: 4.128350e-03	ci left: 3.038037e-01	ci right 3.050609e-01	k: 627130	n:2060000
KS ci ratio: 2.579025e-01	ci left: 9.768700e-05	ci right 1.270497e-04	k: 230	n:2060000
STAC3   2060000 perm   2227 sec   (925 perm/sec)   p_kst 1.116505e-04   p_cons 3.044320e-01   p_joint 2.330097e-04

Joint ci ratio: 1.783453e-01	ci left: 2.125262e-04	ci right 2.545933e-04	k: 482	n:2070000
Cons ci ratio: 4.118133e-03	ci left: 3.038292e-01	ci right 3.050834e-01	k: 630224	n:2070000
KS ci ratio: 2.567932e-01	ci left: 9.811895e-05	ci right 1.274643e-04	k: 232	n:2070000
STAC3   2070000 perm   2246 sec   (922 perm/sec)   p_kst 1.120773e-04   p_cons 3.044560e-01   p_joint 2.328502e-04

Joint ci ratio: 1.781610e-01	ci left: 2.119637e-04	ci right 2.538715e-04	k: 483	n:2080000
Cons ci ratio: 4.108024e-03	ci left: 3.038511e-01	ci right 3.051023e-01	k: 633311	n:2080000
KS ci ratio: 2.567933e-01	ci left: 9.764722e-05	ci right 1.268515e-04	k: 232	n:2080000
STAC3   2080000 perm   2266 sec   (918 perm/sec)   p_kst 1.115385e-04   p_cons 3.044764e-01   p_joint 2.322115e-04

Joint ci ratio: 1.776114e-01	ci left: 2.123210e-04	ci right 2.541560e-04	k: 486	n:2090000
Cons ci ratio: 4.098415e-03	ci left: 3.038288e-01	ci right 3.050770e-01	k: 636306	n:2090000
KS ci ratio: 2.551558e-01	ci left: 9.852334e-05	ci right 1.277719e-04	k: 235	n:2090000
STAC3   2090000 perm   2285 sec   (915 perm/sec)   p_kst 1.124402e-04   p_cons 3.044526e-01   p_joint 2.325359e-04

Joint ci ratio: 1.770668e-01	ci left: 2.126752e-04	ci right 2.544377e-04	k: 489	n:2100000
Cons ci ratio: 4.088965e-03	ci left: 3.037972e-01	ci right 3.050424e-01	k: 639281	n:2100000
KS ci ratio: 2.535492e-01	ci left: 9.939169e-05	ci right 1.286829e-04	k: 238	n:2100000
STAC3   2100000 perm   2305 sec   (911 perm/sec)   p_kst 1.133333e-04   p_cons 3.044195e-01   p_joint 2.328571e-04

Joint ci ratio: 1.763484e-01	ci left: 2.134791e-04	ci right 2.552113e-04	k: 493	n:2110000
Cons ci ratio: 4.079032e-03	ci left: 3.038227e-01	ci right 3.050650e-01	k: 642376	n:2110000
KS ci ratio: 2.524949e-01	ci left: 9.980841e-05	ci right 1.290808e-04	k: 240	n:2110000
STAC3   2110000 perm   2325 sec   (907 perm/sec)   p_kst 1.137441e-04   p_cons 3.044436e-01   p_joint 2.336493e-04

Joint ci ratio: 1.756387e-01	ci left: 2.142758e-04	ci right 2.559773e-04	k: 497	n:2120000
Cons ci ratio: 4.069339e-03	ci left: 3.038306e-01	ci right 3.050699e-01	k: 645434	n:2120000
KS ci ratio: 2.524950e-01	ci left: 9.933761e-05	ci right 1.284720e-04	k: 240	n:2120000
STAC3   2120000 perm   2345 sec   (904 perm/sec)   p_kst 1.132075e-04   p_cons 3.044500e-01   p_joint 2.344340e-04

Joint ci ratio: 1.756388e-01	ci left: 2.132698e-04	ci right 2.547755e-04	k: 497	n:2130000
Cons ci ratio: 4.059674e-03	ci left: 3.038426e-01	ci right 3.050791e-01	k: 648501	n:2130000
KS ci ratio: 2.524951e-01	ci left: 9.887124e-05	ci right 1.278688e-04	k: 240	n:2130000
STAC3   2130000 perm   2365 sec   (901 perm/sec)   p_kst 1.126761e-04   p_cons 3.044606e-01   p_joint 2.333333e-04

Joint ci ratio: 1.754628e-01	ci left: 2.127200e-04	ci right 2.540728e-04	k: 498	n:2140000
Cons ci ratio: 4.050350e-03	ci left: 3.038260e-01	ci right 3.050596e-01	k: 651507	n:2140000
KS ci ratio: 2.519728e-01	ci left: 9.884697e-05	ci right 1.277681e-04	k: 241	n:2140000
STAC3   2140000 perm   2385 sec   (897 perm/sec)   p_kst 1.126168e-04   p_cons 3.044425e-01   p_joint 2.327103e-04

Joint ci ratio: 1.270198e-01	ci left: 4.146618e-04	ci right 4.713491e-04	k: 951	n:2150000
Cons ci ratio: 4.040877e-03	ci left: 3.038319e-01	ci right 3.050626e-01	k: 654561	n:2150000
KS ci ratio: 2.504253e-01	ci left: 9.969474e-05	ci right 1.286568e-04	k: 244	n:2150000
STAC3   2150000 perm   2406 sec   (894 perm/sec)   p_kst 1.134884e-04   p_cons 3.044470e-01   p_joint 4.423256e-04

Joint ci ratio: 1.268201e-01	ci left: 4.140868e-04	ci right 4.705999e-04	k: 954	n:2160000
Cons ci ratio: 4.032008e-03	ci left: 3.037813e-01	ci right 3.050091e-01	k: 657493	n:2160000
KS ci ratio: 2.499158e-01	ci left: 9.966713e-05	ci right 1.285531e-04	k: 245	n:2160000
STAC3   2160000 perm   2426 sec   (890 perm/sec)   p_kst 1.134259e-04   p_cons 3.043949e-01   p_joint 4.416667e-04

Joint ci ratio: 1.264236e-01	ci left: 4.148560e-04	ci right 4.712837e-04	k: 960	n:2170000
Cons ci ratio: 4.022278e-03	ci left: 3.038279e-01	ci right 3.050528e-01	k: 660635	n:2170000
KS ci ratio: 2.494094e-01	ci left: 9.963983e-05	ci right 1.284503e-04	k: 246	n:2170000
STAC3   2170000 perm   2447 sec   (887 perm/sec)   p_kst 1.133641e-04   p_cons 3.044401e-01   p_joint 4.423963e-04

Joint ci ratio: 1.259656e-01	ci left: 4.160627e-04	ci right 4.724342e-04	k: 967	n:2180000
Cons ci ratio: 4.013170e-03	ci left: 3.038158e-01	ci right 3.050379e-01	k: 663650	n:2180000
KS ci ratio: 2.489060e-01	ci left: 9.961284e-05	ci right 1.283484e-04	k: 247	n:2180000
STAC3   2180000 perm   2468 sec   (883 perm/sec)   p_kst 1.133028e-04   p_cons 3.044266e-01   p_joint 4.435780e-04

Joint ci ratio: 1.257061e-01	ci left: 4.159318e-04	ci right 4.721609e-04	k: 971	n:2190000
Cons ci ratio: 4.004067e-03	ci left: 3.038098e-01	ci right 3.050291e-01	k: 666678	n:2190000
KS ci ratio: 2.484057e-01	ci left: 9.958616e-05	ci right 1.282473e-04	k: 248	n:2190000
STAC3   2190000 perm   2489 sec   (880 perm/sec)   p_kst 1.132420e-04   p_cons 3.044192e-01   p_joint 4.433790e-04

Joint ci ratio: 1.260310e-01	ci left: 4.118400e-04	ci right 4.676705e-04	k: 966	n:2200000
Cons ci ratio: 3.994739e-03	ci left: 3.038342e-01	ci right 3.050508e-01	k: 669773	n:2200000
KS ci ratio: 2.474140e-01	ci left: 9.998611e-05	ci right 1.286298e-04	k: 250	n:2200000
STAC3   2200000 perm   2510 sec   (876 perm/sec)   p_kst 1.136364e-04   p_cons 3.044423e-01   p_joint 4.390909e-04

Joint ci ratio: 1.267544e-01	ci left: 4.051564e-04	ci right 4.604198e-04	k: 955	n:2210000
Cons ci ratio: 3.985552e-03	ci left: 3.038503e-01	ci right 3.050642e-01	k: 672850	n:2210000
KS ci ratio: 2.454657e-01	ci left: 1.012319e-04	ci right 1.299693e-04	k: 254	n:2210000
STAC3   2210000 perm   2531 sec   (873 perm/sec)   p_kst 1.149321e-04   p_cons 3.044570e-01   p_joint 4.321267e-04

Joint ci ratio: 1.272885e-01	ci left: 3.998422e-04	ci right 4.546279e-04	k: 947	n:2220000
Cons ci ratio: 3.976242e-03	ci left: 3.038861e-01	ci right 3.050973e-01	k: 675971	n:2220000
KS ci ratio: 2.449858e-01	ci left: 1.011987e-04	ci right 1.298619e-04	k: 255	n:2220000
STAC3   2220000 perm   2552 sec   (870 perm/sec)   p_kst 1.148649e-04   p_cons 3.044914e-01   p_joint 4.265766e-04

Joint ci ratio: 1.270208e-01	ci left: 3.997858e-04	ci right 4.544399e-04	k: 951	n:2230000
Cons ci ratio: 3.967031e-03	ci left: 3.039180e-01	ci right 3.051265e-01	k: 679084	n:2230000
KS ci ratio: 2.445087e-01	ci left: 1.011658e-04	ci right 1.297554e-04	k: 256	n:2230000
STAC3   2230000 perm   2573 sec   (867 perm/sec)   p_kst 1.147982e-04   p_cons 3.045220e-01   p_joint 4.264574e-04

Joint ci ratio: 1.268211e-01	ci left: 3.992978e-04	ci right 4.537930e-04	k: 954	n:2240000
Cons ci ratio: 3.958188e-03	ci left: 3.039170e-01	ci right 3.051228e-01	k: 682124	n:2240000
KS ci ratio: 2.445088e-01	ci left: 1.007141e-04	ci right 1.291762e-04	k: 256	n:2240000
STAC3   2240000 perm   2594 sec   (863 perm/sec)   p_kst 1.142857e-04   p_cons 3.045196e-01   p_joint 4.258929e-04

Joint ci ratio: 1.262276e-01	ci left: 4.013966e-04	ci right 4.559026e-04	k: 963	n:2250000
Cons ci ratio: 3.949590e-03	ci left: 3.038961e-01	ci right 3.050991e-01	k: 685119	n:2250000
KS ci ratio: 2.430940e-01	ci left: 1.015184e-04	ci right 1.300167e-04	k: 259	n:2250000
STAC3   2250000 perm   2616 sec   (860 perm/sec)   p_kst 1.151111e-04   p_cons 3.044973e-01   p_joint 4.280000e-04

Joint ci ratio: 1.259666e-01	ci left: 4.013346e-04	ci right 4.557111e-04	k: 967	n:2260000
Cons ci ratio: 3.940941e-03	ci left: 3.038868e-01	ci right 3.050872e-01	k: 688140	n:2260000
KS ci ratio: 2.430940e-01	ci left: 1.010692e-04	ci right 1.294414e-04	k: 259	n:2260000
STAC3   2260000 perm   2637 sec   (857 perm/sec)   p_kst 1.146018e-04   p_cons 3.044867e-01   p_joint 4.278761e-04

Joint ci ratio: 1.286540e-01	ci left: 3.825063e-04	ci right 4.355218e-04	k: 927	n:2270000
Cons ci ratio: 3.932324e-03	ci left: 3.038802e-01	ci right 3.050780e-01	k: 691167	n:2270000
KS ci ratio: 2.430941e-01	ci left: 1.006240e-04	ci right 1.288712e-04	k: 259	n:2270000
STAC3   2270000 perm   2658 sec   (854 perm/sec)   p_kst 1.140969e-04   p_cons 3.044789e-01   p_joint 4.083700e-04

Joint ci ratio: 1.283776e-01	ci left: 3.825267e-04	ci right 4.354224e-04	k: 931	n:2280000
Cons ci ratio: 3.923438e-03	ci left: 3.039088e-01	ci right 3.051040e-01	k: 694274	n:2280000
KS ci ratio: 2.430942e-01	ci left: 1.001826e-04	ci right 1.283059e-04	k: 259	n:2280000
STAC3   2280000 perm   2680 sec   (851 perm/sec)   p_kst 1.135965e-04   p_cons 3.045061e-01   p_joint 4.083333e-04

Joint ci ratio: 1.279663e-01	ci left: 3.833923e-04	ci right 4.362250e-04	k: 937	n:2290000
Cons ci ratio: 3.914713e-03	ci left: 3.039263e-01	ci right 3.051188e-01	k: 697356	n:2290000
KS ci ratio: 2.426280e-01	ci left: 1.001553e-04	ci right 1.282089e-04	k: 260	n:2290000
STAC3   2290000 perm   2702 sec   (847 perm/sec)   p_kst 1.135371e-04   p_cons 3.045223e-01   p_joint 4.091703e-04

Joint ci ratio: 1.276943e-01	ci left: 3.834089e-04	ci right 4.361231e-04	k: 941	n:2300000
Cons ci ratio: 3.906223e-03	ci left: 3.039244e-01	ci right 3.051143e-01	k: 700394	n:2300000
KS ci ratio: 2.421646e-01	ci left: 1.001282e-04	ci right 1.281126e-04	k: 261	n:2300000
STAC3   2300000 perm   2724 sec   (844 perm/sec)   p_kst 1.134783e-04   p_cons 3.045191e-01   p_joint 4.091304e-04

Joint ci ratio: 1.276267e-01	ci left: 3.821682e-04	ci right 4.346819e-04	k: 942	n:2310000
Cons ci ratio: 3.897644e-03	ci left: 3.039382e-01	ci right 3.051255e-01	k: 703468	n:2310000
KS ci ratio: 2.421646e-01	ci left: 9.969473e-05	ci right 1.275580e-04	k: 261	n:2310000
STAC3   2310000 perm   2746 sec   (841 perm/sec)   p_kst 1.129870e-04   p_cons 3.045316e-01   p_joint 4.077922e-04

Joint ci ratio: 1.272225e-01	ci left: 3.830247e-04	ci right 4.354768e-04	k: 948	n:2320000
Cons ci ratio: 3.889307e-03	ci left: 3.039316e-01	ci right 3.051163e-01	k: 706495	n:2320000
KS ci ratio: 2.412455e-01	ci left: 1.000749e-04	ci right 1.279223e-04	k: 263	n:2320000
STAC3   2320000 perm   2768 sec   (838 perm/sec)   p_kst 1.133621e-04   p_cons 3.045237e-01   p_joint 4.086207e-04

Joint ci ratio: 1.268887e-01	ci left: 3.834586e-04	ci right 4.358219e-04	k: 953	n:2330000
Cons ci ratio: 3.881122e-03	ci left: 3.039143e-01	ci right 3.050965e-01	k: 709497	n:2330000
KS ci ratio: 2.407899e-01	ci left: 1.000486e-04	ci right 1.278284e-04	k: 264	n:2330000
STAC3   2330000 perm   2790 sec   (835 perm/sec)   p_kst 1.133047e-04   p_cons 3.045052e-01   p_joint 4.090129e-04

Joint ci ratio: 1.297077e-01	ci left: 3.648605e-04	ci right 4.158764e-04	k: 912	n:2340000
Cons ci ratio: 3.873020e-03	ci left: 3.038937e-01	ci right 3.050734e-01	k: 712491	n:2340000
KS ci ratio: 2.407900e-01	ci left: 9.962107e-05	ci right 1.272821e-04	k: 264	n:2340000
STAC3   2340000 perm   2812 sec   (832 perm/sec)   p_kst 1.128205e-04   p_cons 3.044833e-01   p_joint 3.897436e-04

Joint ci ratio: 1.292836e-01	ci left: 3.657784e-04	ci right 4.167425e-04	k: 918	n:2350000
Cons ci ratio: 3.864541e-03	ci left: 3.039202e-01	ci right 3.050973e-01	k: 715595	n:2350000
KS ci ratio: 2.398864e-01	ci left: 9.999697e-05	ci right 1.276427e-04	k: 266	n:2350000
STAC3   2350000 perm   2834 sec   (829 perm/sec)   p_kst 1.131915e-04   p_cons 3.045085e-01   p_joint 3.906383e-04

Joint ci ratio: 1.290031e-01	ci left: 3.658687e-04	ci right 4.167263e-04	k: 922	n:2360000
Cons ci ratio: 3.856322e-03	ci left: 3.039239e-01	ci right 3.050986e-01	k: 718646	n:2360000
KS ci ratio: 2.398865e-01	ci left: 9.957325e-05	ci right 1.271018e-04	k: 266	n:2360000
STAC3   2360000 perm   2856 sec   (826 perm/sec)   p_kst 1.127119e-04   p_cons 3.045110e-01   p_joint 3.906780e-04

Joint ci ratio: 1.287940e-01	ci left: 3.655499e-04	ci right 4.162746e-04	k: 925	n:2370000
Cons ci ratio: 3.847982e-03	ci left: 3.039466e-01	ci right 3.051188e-01	k: 721742	n:2370000
KS ci ratio: 2.398865e-01	ci left: 9.915311e-05	ci right 1.265655e-04	k: 266	n:2370000
STAC3   2370000 perm   2878 sec   (823 perm/sec)   p_kst 1.122363e-04   p_cons 3.045325e-01   p_joint 3.902954e-04

Joint ci ratio: 1.285859e-01	ci left: 3.652339e-04	ci right 4.158266e-04	k: 928	n:2380000
Cons ci ratio: 3.839838e-03	ci left: 3.039536e-01	ci right 3.051234e-01	k: 724801	n:2380000
KS ci ratio: 2.389931e-01	ci left: 9.952643e-05	ci right 1.269244e-04	k: 268	n:2380000
STAC3   2380000 perm   2900 sec   (821 perm/sec)   p_kst 1.126050e-04   p_cons 3.045382e-01   p_joint 3.899160e-04

Joint ci ratio: 1.284478e-01	ci left: 3.645156e-04	ci right 4.149505e-04	k: 930	n:2390000
Cons ci ratio: 3.831790e-03	ci left: 3.039555e-01	ci right 3.051228e-01	k: 727848	n:2390000
KS ci ratio: 2.389931e-01	ci left: 9.911000e-05	ci right 1.263933e-04	k: 268	n:2390000
STAC3   2390000 perm   2922 sec   (818 perm/sec)   p_kst 1.121339e-04   p_cons 3.045389e-01   p_joint 3.891213e-04

Joint ci ratio: 1.283789e-01	ci left: 3.634001e-04	ci right 4.136516e-04	k: 931	n:2400000
Cons ci ratio: 3.823642e-03	ci left: 3.039740e-01	ci right 3.051389e-01	k: 730935	n:2400000
KS ci ratio: 2.389932e-01	ci left: 9.869704e-05	ci right 1.258667e-04	k: 268	n:2400000
STAC3   2400000 perm   2945 sec   (815 perm/sec)   p_kst 1.116667e-04   p_cons 3.045562e-01   p_joint 3.879167e-04

Joint ci ratio: 1.283790e-01	ci left: 3.618922e-04	ci right 4.119352e-04	k: 931	n:2410000
Cons ci ratio: 3.815614e-03	ci left: 3.039850e-01	ci right 3.051475e-01	k: 734004	n:2410000
KS ci ratio: 2.389932e-01	ci left: 9.828750e-05	ci right 1.253444e-04	k: 268	n:2410000
STAC3   2410000 perm   2968 sec   (812 perm/sec)   p_kst 1.112033e-04   p_cons 3.045660e-01   p_joint 3.863071e-04

Joint ci ratio: 1.281729e-01	ci left: 3.615967e-04	ci right 4.115124e-04	k: 934	n:2420000
Cons ci ratio: 3.807929e-03	ci left: 3.039632e-01	ci right 3.051232e-01	k: 736994	n:2420000
KS ci ratio: 2.389933e-01	ci left: 9.788135e-05	ci right 1.248265e-04	k: 268	n:2420000
STAC3   2420000 perm   2991 sec   (809 perm/sec)   p_kst 1.107438e-04   p_cons 3.045430e-01   p_joint 3.859504e-04

Joint ci ratio: 1.281045e-01	ci left: 3.605069e-04	ci right 4.102437e-04	k: 935	n:2430000
Cons ci ratio: 3.799744e-03	ci left: 3.040024e-01	ci right 3.051602e-01	k: 740132	n:2430000
KS ci ratio: 2.389933e-01	ci left: 9.747855e-05	ci right 1.243128e-04	k: 268	n:2430000
STAC3   2430000 perm   3014 sec   (806 perm/sec)   p_kst 1.102881e-04   p_cons 3.045811e-01   p_joint 3.847737e-04

Joint ci ratio: 1.279679e-01	ci left: 3.598228e-04	ci right 4.094083e-04	k: 937	n:2440000
Cons ci ratio: 3.791879e-03	ci left: 3.040115e-01	ci right 3.051668e-01	k: 743197	n:2440000
KS ci ratio: 2.389934e-01	ci left: 9.707904e-05	ci right 1.238033e-04	k: 268	n:2440000
STAC3   2440000 perm   3036 sec   (804 perm/sec)   p_kst 1.098361e-04   p_cons 3.045889e-01   p_joint 3.840164e-04

Joint ci ratio: 1.280363e-01	ci left: 3.579591e-04	ci right 4.073160e-04	k: 936	n:2450000
Cons ci ratio: 3.784015e-03	ci left: 3.040258e-01	ci right 3.051788e-01	k: 746275	n:2450000
KS ci ratio: 2.385504e-01	ci left: 9.706655e-05	ci right 1.237305e-04	k: 269	n:2450000
STAC3   2450000 perm   3059 sec   (801 perm/sec)   p_kst 1.097959e-04   p_cons 3.046020e-01   p_joint 3.820408e-04

Joint ci ratio: 1.276960e-01	ci left: 3.584715e-04	ci right 4.077578e-04	k: 941	n:2460000
Cons ci ratio: 3.776237e-03	ci left: 3.040359e-01	ci right 3.051865e-01	k: 749343	n:2460000
KS ci ratio: 2.381099e-01	ci left: 9.705420e-05	ci right 1.236583e-04	k: 270	n:2460000
STAC3   2460000 perm   3082 sec   (798 perm/sec)   p_kst 1.097561e-04   p_cons 3.046110e-01   p_joint 3.825203e-04

Joint ci ratio: 1.274258e-01	ci left: 3.585879e-04	ci right 4.077780e-04	k: 945	n:2470000
Cons ci ratio: 3.768438e-03	ci left: 3.040536e-01	ci right 3.052019e-01	k: 752430	n:2470000
KS ci ratio: 2.376718e-01	ci left: 9.704200e-05	ci right 1.235866e-04	k: 271	n:2470000
STAC3   2470000 perm   3105 sec   (796 perm/sec)   p_kst 1.097166e-04   p_cons 3.046275e-01   p_joint 3.825911e-04

Joint ci ratio: 1.272913e-01	ci left: 3.579228e-04	ci right 4.069659e-04	k: 947	n:2480000
Cons ci ratio: 3.760783e-03	ci left: 3.040603e-01	ci right 3.052063e-01	k: 755490	n:2480000
KS ci ratio: 2.368027e-01	ci left: 9.740922e-05	ci right 1.239426e-04	k: 273	n:2480000
STAC3   2480000 perm   3128 sec   (793 perm/sec)   p_kst 1.100806e-04   p_cons 3.046331e-01   p_joint 3.818548e-04

Joint ci ratio: 1.272243e-01	ci left: 3.568741e-04	ci right 4.057459e-04	k: 948	n:2490000
Cons ci ratio: 3.753339e-03	ci left: 3.040484e-01	ci right 3.051922e-01	k: 758504	n:2490000
KS ci ratio: 2.363718e-01	ci left: 9.739582e-05	ci right 1.238702e-04	k: 274	n:2490000
STAC3   2490000 perm   3152 sec   (790 perm/sec)   p_kst 1.100402e-04   p_cons 3.046201e-01   p_joint 3.807229e-04

Joint ci ratio: 1.266913e-01	ci left: 3.585450e-04	ci right 4.074244e-04	k: 956	n:2500000
Cons ci ratio: 3.745832e-03	ci left: 3.040487e-01	ci right 3.051901e-01	k: 761548	n:2500000
KS ci ratio: 2.355169e-01	ci left: 9.775895e-05	ci right 1.242219e-04	k: 276	n:2500000
STAC3   2500000 perm   3175 sec   (787 perm/sec)   p_kst 1.104000e-04   p_cons 3.046192e-01   p_joint 3.824000e-04

Joint ci ratio: 1.264932e-01	ci left: 3.582739e-04	ci right 4.070343e-04	k: 959	n:2510000
Cons ci ratio: 3.738480e-03	ci left: 3.040366e-01	ci right 3.051758e-01	k: 764561	n:2510000
KS ci ratio: 2.355169e-01	ci left: 9.736947e-05	ci right 1.237270e-04	k: 276	n:2510000
STAC3   2510000 perm   3198 sec   (785 perm/sec)   p_kst 1.099602e-04   p_cons 3.046060e-01   p_joint 3.820717e-04

Joint ci ratio: 1.259693e-01	ci left: 3.599266e-04	ci right 4.086938e-04	k: 967	n:2520000
Cons ci ratio: 3.730859e-03	ci left: 3.040599e-01	ci right 3.051968e-01	k: 767663	n:2520000
KS ci ratio: 2.346712e-01	ci left: 9.772999e-05	ci right 1.240763e-04	k: 278	n:2520000
STAC3   2520000 perm   3222 sec   (782 perm/sec)   p_kst 1.103175e-04   p_cons 3.046282e-01   p_joint 3.837302e-04

Joint ci ratio: 1.259044e-01	ci left: 3.588867e-04	ci right 4.074862e-04	k: 968	n:2530000
Cons ci ratio: 3.723438e-03	ci left: 3.040657e-01	ci right 3.052004e-01	k: 770721	n:2530000
KS ci ratio: 2.342518e-01	ci left: 9.771575e-05	ci right 1.240043e-04	k: 279	n:2530000
STAC3   2530000 perm   3245 sec   (780 perm/sec)   p_kst 1.102767e-04   p_cons 3.046328e-01   p_joint 3.826087e-04

Joint ci ratio: 1.257100e-01	ci left: 3.586177e-04	ci right 4.071001e-04	k: 971	n:2540000
Cons ci ratio: 3.716002e-03	ci left: 3.040781e-01	ci right 3.052105e-01	k: 773796	n:2540000
KS ci ratio: 2.338346e-01	ci left: 9.770166e-05	ci right 1.239329e-04	k: 280	n:2540000
STAC3   2540000 perm   3269 sec   (777 perm/sec)   p_kst 1.102362e-04   p_cons 3.046441e-01   p_joint 3.822835e-04

Joint ci ratio: 1.251957e-01	ci left: 3.602502e-04	ci right 4.087393e-04	k: 979	n:2550000
Cons ci ratio: 3.708683e-03	ci left: 3.040822e-01	ci right 3.052124e-01	k: 776850	n:2550000
KS ci ratio: 2.334196e-01	ci left: 9.768772e-05	ci right 1.238619e-04	k: 281	n:2550000
STAC3   2550000 perm   3292 sec   (775 perm/sec)   p_kst 1.101961e-04   p_cons 3.046471e-01   p_joint 3.839216e-04

Joint ci ratio: 1.251320e-01	ci left: 3.592214e-04	ci right 4.075455e-04	k: 980	n:2560000
Cons ci ratio: 3.701612e-03	ci left: 3.040628e-01	ci right 3.051908e-01	k: 779844	n:2560000
KS ci ratio: 2.334197e-01	ci left: 9.730613e-05	ci right 1.233781e-04	k: 281	n:2560000
STAC3   2560000 perm   3316 sec   (772 perm/sec)   p_kst 1.097656e-04   p_cons 3.046266e-01   p_joint 3.828125e-04

Joint ci ratio: 1.250683e-01	ci left: 3.582005e-04	ci right 4.063610e-04	k: 981	n:2570000
Cons ci ratio: 3.694414e-03	ci left: 3.040626e-01	ci right 3.051884e-01	k: 782887	n:2570000
KS ci ratio: 2.334198e-01	ci left: 9.692750e-05	ci right 1.228980e-04	k: 281	n:2570000
STAC3   2570000 perm   3340 sec   (769 perm/sec)   p_kst 1.093385e-04   p_cons 3.046253e-01   p_joint 3.817121e-04

Joint ci ratio: 1.246879e-01	ci left: 3.590651e-04	ci right 4.071842e-04	k: 987	n:2580000
Cons ci ratio: 3.687370e-03	ci left: 3.040497e-01	ci right 3.051733e-01	k: 785897	n:2580000
KS ci ratio: 2.330070e-01	ci left: 9.691676e-05	ci right 1.228319e-04	k: 282	n:2580000
STAC3   2580000 perm   3364 sec   (767 perm/sec)   p_kst 1.093023e-04   p_cons 3.046112e-01   p_joint 3.825581e-04

Joint ci ratio: 1.244991e-01	ci left: 3.588009e-04	ci right 4.068064e-04	k: 990	n:2590000
Cons ci ratio: 3.680131e-03	ci left: 3.040638e-01	ci right 3.051853e-01	k: 788977	n:2590000
KS ci ratio: 2.325964e-01	ci left: 9.690615e-05	ci right 1.227662e-04	k: 283	n:2590000
STAC3   2590000 perm   3388 sec   (764 perm/sec)   p_kst 1.092664e-04   p_cons 3.046243e-01   p_joint 3.822394e-04

Joint ci ratio: 1.243111e-01	ci left: 3.585389e-04	ci right 4.064315e-04	k: 993	n:2600000
Cons ci ratio: 3.673097e-03	ci left: 3.040591e-01	ci right 3.051783e-01	k: 792008	n:2600000
KS ci ratio: 2.321880e-01	ci left: 9.689566e-05	ci right 1.227010e-04	k: 284	n:2600000
STAC3   2600000 perm   3413 sec   (762 perm/sec)   p_kst 1.092308e-04   p_cons 3.046185e-01   p_joint 3.819231e-04

Joint ci ratio: 1.241239e-01	ci left: 3.582789e-04	ci right 4.060594e-04	k: 996	n:2610000
Cons ci ratio: 3.666194e-03	ci left: 3.040440e-01	ci right 3.051611e-01	k: 795012	n:2610000
KS ci ratio: 2.321880e-01	ci left: 9.652441e-05	ci right 1.222309e-04	k: 284	n:2610000
STAC3   2610000 perm   3437 sec   (759 perm/sec)   p_kst 1.088123e-04   p_cons 3.046023e-01   p_joint 3.816092e-04

Joint ci ratio: 1.239996e-01	ci left: 3.576511e-04	ci right 4.052966e-04	k: 998	n:2620000
Cons ci ratio: 3.659194e-03	ci left: 3.040446e-01	ci right 3.051596e-01	k: 798057	n:2620000
KS ci ratio: 2.321881e-01	ci left: 9.615599e-05	ci right 1.217644e-04	k: 284	n:2620000
STAC3   2620000 perm   3462 sec   (757 perm/sec)   p_kst 1.083969e-04   p_cons 3.046019e-01   p_joint 3.809160e-04

Joint ci ratio: 1.238757e-01	ci left: 3.570280e-04	ci right 4.045396e-04	k: 1000	n:2630000
Cons ci ratio: 3.652346e-03	ci left: 3.040324e-01	ci right 3.051452e-01	k: 801068	n:2630000
KS ci ratio: 2.321881e-01	ci left: 9.579038e-05	ci right 1.213014e-04	k: 284	n:2630000
STAC3   2630000 perm   3487 sec   (754 perm/sec)   p_kst 1.079848e-04   p_cons 3.045886e-01   p_joint 3.802281e-04

Joint ci ratio: 1.235675e-01	ci left: 3.575110e-04	ci right 4.049598e-04	k: 1005	n:2640000
Cons ci ratio: 3.645268e-03	ci left: 3.040513e-01	ci right 3.051620e-01	k: 804161	n:2640000
KS ci ratio: 2.317819e-01	ci left: 9.578431e-05	ci right 1.212427e-04	k: 285	n:2640000
STAC3   2640000 perm   3512 sec   (752 perm/sec)   p_kst 1.079545e-04   p_cons 3.046064e-01   p_joint 3.806818e-04

Joint ci ratio: 1.274948e-01	ci left: 3.338654e-04	ci right 3.796908e-04	k: 944	n:2650000
Cons ci ratio: 3.638413e-03	ci left: 3.040489e-01	ci right 3.051575e-01	k: 807198	n:2650000
KS ci ratio: 2.305756e-01	ci left: 9.648938e-05	ci right 1.219827e-04	k: 288	n:2650000
STAC3   2650000 perm   3536 sec   (749 perm/sec)   p_kst 1.086792e-04   p_cons 3.046030e-01   p_joint 3.562264e-04

Joint ci ratio: 1.271589e-01	ci left: 3.344301e-04	ci right 3.802029e-04	k: 949	n:2660000
Cons ci ratio: 3.631797e-03	ci left: 3.040233e-01	ci right 3.051298e-01	k: 810173	n:2660000
KS ci ratio: 2.297819e-01	ci left: 9.683517e-05	ci right 1.223192e-04	k: 290	n:2660000
STAC3   2660000 perm   3561 sec   (747 perm/sec)   p_kst 1.090226e-04   p_cons 3.045763e-01   p_joint 3.567669e-04

Joint ci ratio: 1.269586e-01	ci left: 3.342654e-04	ci right 3.799382e-04	k: 952	n:2670000
Cons ci ratio: 3.624966e-03	ci left: 3.040270e-01	ci right 3.051315e-01	k: 813226	n:2670000
KS ci ratio: 2.289962e-01	ci left: 9.717851e-05	ci right 1.226531e-04	k: 292	n:2670000
STAC3   2670000 perm   3586 sec   (745 perm/sec)   p_kst 1.093633e-04   p_cons 3.045790e-01   p_joint 3.565543e-04

Joint ci ratio: 1.266930e-01	ci left: 3.344634e-04	ci right 3.800604e-04	k: 956	n:2680000
Cons ci ratio: 3.618132e-03	ci left: 3.040356e-01	ci right 3.051380e-01	k: 816292	n:2680000
KS ci ratio: 2.286065e-01	ci left: 9.716765e-05	ci right 1.225900e-04	k: 293	n:2680000
STAC3   2680000 perm   3611 sec   (742 perm/sec)   p_kst 1.093284e-04   p_cons 3.045866e-01   p_joint 3.567164e-04

Joint ci ratio: 1.293572e-01	ci left: 3.191860e-04	ci right 3.636856e-04	k: 917	n:2690000
Cons ci ratio: 3.611343e-03	ci left: 3.040433e-01	ci right 3.051437e-01	k: 819356	n:2690000
KS ci ratio: 2.282187e-01	ci left: 9.715691e-05	ci right 1.225272e-04	k: 294	n:2690000
STAC3   2690000 perm   3636 sec   (740 perm/sec)   p_kst 1.092937e-04   p_cons 3.045933e-01   p_joint 3.408922e-04

Joint ci ratio: 1.306449e-01	ci left: 3.115539e-04	ci right 3.554554e-04	k: 899	n:2700000
Cons ci ratio: 3.604905e-03	ci left: 3.040144e-01	ci right 3.051127e-01	k: 822321	n:2700000
KS ci ratio: 2.282187e-01	ci left: 9.679707e-05	ci right 1.220734e-04	k: 294	n:2700000
STAC3   2700000 perm   3661 sec   (738 perm/sec)   p_kst 1.088889e-04   p_cons 3.045633e-01   p_joint 3.329630e-04

Joint ci ratio: 1.304277e-01	ci left: 3.114751e-04	ci right 3.552869e-04	k: 902	n:2710000
Cons ci ratio: 3.598068e-03	ci left: 3.040366e-01	ci right 3.051328e-01	k: 825424	n:2710000
KS ci ratio: 2.278329e-01	ci left: 9.678781e-05	ci right 1.220130e-04	k: 295	n:2710000
STAC3   2710000 perm   3686 sec   (735 perm/sec)   p_kst 1.088561e-04   p_cons 3.045845e-01   p_joint 3.328413e-04

Joint ci ratio: 1.299964e-01	ci left: 3.124640e-04	ci right 3.562583e-04	k: 908	n:2720000
Cons ci ratio: 3.591590e-03	ci left: 3.040207e-01	ci right 3.051150e-01	k: 828424	n:2720000
KS ci ratio: 2.266870e-01	ci left: 9.747214e-05	ci right 1.227300e-04	k: 298	n:2720000
STAC3   2720000 perm   3711 sec   (733 perm/sec)   p_kst 1.095588e-04   p_cons 3.045676e-01   p_joint 3.338235e-04

Joint ci ratio: 1.297825e-01	ci left: 3.123826e-04	ci right 3.560880e-04	k: 911	n:2730000
Cons ci ratio: 3.584968e-03	ci left: 3.040263e-01	ci right 3.051185e-01	k: 831482	n:2730000
KS ci ratio: 2.259325e-01	ci left: 9.780617e-05	ci right 1.230545e-04	k: 300	n:2730000
STAC3   2730000 perm   3736 sec   (731 perm/sec)   p_kst 1.098901e-04   p_cons 3.045722e-01   p_joint 3.336996e-04

Joint ci ratio: 1.296404e-01	ci left: 3.119488e-04	ci right 3.555420e-04	k: 913	n:2740000
Cons ci ratio: 3.578595e-03	ci left: 3.040066e-01	ci right 3.050968e-01	k: 834471	n:2740000
KS ci ratio: 2.255582e-01	ci left: 9.779354e-05	ci right 1.229910e-04	k: 301	n:2740000
STAC3   2740000 perm   3761 sec   (728 perm/sec)   p_kst 1.098540e-04   p_cons 3.045515e-01   p_joint 3.332117e-04

Joint ci ratio: 1.292872e-01	ci left: 3.125737e-04	ci right 3.561261e-04	k: 918	n:2750000
Cons ci ratio: 3.572011e-03	ci left: 3.040161e-01	ci right 3.051043e-01	k: 837540	n:2750000
KS ci ratio: 2.248150e-01	ci left: 9.812418e-05	ci right 1.233120e-04	k: 303	n:2750000
STAC3   2750000 perm   3787 sec   (726 perm/sec)   p_kst 1.101818e-04   p_cons 3.045600e-01   p_joint 3.338182e-04

Joint ci ratio: 1.291468e-01	ci left: 3.121424e-04	ci right 3.555839e-04	k: 920	n:2760000
Cons ci ratio: 3.565331e-03	ci left: 3.040411e-01	ci right 3.051274e-01	k: 840652	n:2760000
KS ci ratio: 2.240790e-01	ci left: 9.845256e-05	ci right 1.236305e-04	k: 305	n:2760000
STAC3   2760000 perm   3812 sec   (724 perm/sec)   p_kst 1.105072e-04   p_cons 3.045841e-01   p_joint 3.333333e-04

Joint ci ratio: 1.295698e-01	ci left: 3.089195e-04	ci right 3.520641e-04	k: 914	n:2770000
Cons ci ratio: 3.559050e-03	ci left: 3.040230e-01	ci right 3.051073e-01	k: 843645	n:2770000
KS ci ratio: 2.237138e-01	ci left: 9.843790e-05	ci right 1.235654e-04	k: 306	n:2770000
STAC3   2770000 perm   3837 sec   (722 perm/sec)   p_kst 1.104693e-04   p_cons 3.045650e-01   p_joint 3.299639e-04

Joint ci ratio: 1.294284e-01	ci left: 3.085044e-04	ci right 3.515404e-04	k: 916	n:2780000
Cons ci ratio: 3.552693e-03	ci left: 3.040180e-01	ci right 3.051004e-01	k: 846674	n:2780000
KS ci ratio: 2.233503e-01	ci left: 9.842338e-05	ci right 1.235008e-04	k: 307	n:2780000
STAC3   2780000 perm   3863 sec   (720 perm/sec)   p_kst 1.104317e-04   p_cons 3.045590e-01   p_joint 3.294964e-04

Joint ci ratio: 1.291470e-01	ci left: 3.087860e-04	ci right 3.517604e-04	k: 920	n:2790000
Cons ci ratio: 3.546329e-03	ci left: 3.040181e-01	ci right 3.050985e-01	k: 849717	n:2790000
KS ci ratio: 2.229886e-01	ci left: 9.840899e-05	ci right 1.234365e-04	k: 308	n:2790000
STAC3   2790000 perm   3889 sec   (717 perm/sec)   p_kst 1.103943e-04   p_cons 3.045581e-01   p_joint 3.297491e-04

Joint ci ratio: 1.290071e-01	ci left: 3.083744e-04	ci right 3.512415e-04	k: 922	n:2800000
Cons ci ratio: 3.540317e-03	ci left: 3.039799e-01	ci right 3.050583e-01	k: 852653	n:2800000
KS ci ratio: 2.226287e-01	ci left: 9.839474e-05	ci right 1.233727e-04	k: 309	n:2800000
STAC3   2800000 perm   3916 sec   (715 perm/sec)   p_kst 1.103571e-04   p_cons 3.045189e-01   p_joint 3.292857e-04

Joint ci ratio: 1.287284e-01	ci left: 3.086546e-04	ci right 3.514609e-04	k: 926	n:2810000
Cons ci ratio: 3.533939e-03	ci left: 3.039897e-01	ci right 3.050662e-01	k: 855723	n:2810000
KS ci ratio: 2.219139e-01	ci left: 9.871671e-05	ci right 1.236850e-04	k: 311	n:2810000
STAC3   2810000 perm   3941 sec   (713 perm/sec)   p_kst 1.106762e-04   p_cons 3.045278e-01   p_joint 3.295374e-04

Joint ci ratio: 1.281764e-01	ci left: 3.103058e-04	ci right 3.531425e-04	k: 934	n:2820000
Cons ci ratio: 3.527647e-03	ci left: 3.039930e-01	ci right 3.050676e-01	k: 858775	n:2820000
KS ci ratio: 2.215592e-01	ci left: 9.870156e-05	ci right 1.236207e-04	k: 312	n:2820000
STAC3   2820000 perm   3967 sec   (711 perm/sec)   p_kst 1.106383e-04   p_cons 3.045301e-01   p_joint 3.312057e-04

Joint ci ratio: 1.279713e-01	ci left: 3.102354e-04	ci right 3.529887e-04	k: 937	n:2830000
Cons ci ratio: 3.521519e-03	ci left: 3.039808e-01	ci right 3.050535e-01	k: 861783	n:2830000
KS ci ratio: 2.208546e-01	ci left: 9.902036e-05	ci right 1.239296e-04	k: 314	n:2830000
STAC3   2830000 perm   3994 sec   (709 perm/sec)   p_kst 1.109541e-04   p_cons 3.045170e-01   p_joint 3.310954e-04

Joint ci ratio: 1.279714e-01	ci left: 3.091431e-04	ci right 3.517458e-04	k: 937	n:2840000
Cons ci ratio: 3.515264e-03	ci left: 3.039877e-01	ci right 3.050585e-01	k: 864845	n:2840000
KS ci ratio: 2.208547e-01	ci left: 9.867169e-05	ci right 1.234933e-04	k: 314	n:2840000
STAC3   2840000 perm   4021 sec   (706 perm/sec)   p_kst 1.105634e-04   p_cons 3.045229e-01   p_joint 3.299296e-04

Joint ci ratio: 1.277672e-01	ci left: 3.090773e-04	ci right 3.515979e-04	k: 940	n:2850000
Cons ci ratio: 3.508982e-03	ci left: 3.040019e-01	ci right 3.050708e-01	k: 867928	n:2850000
KS ci ratio: 2.205050e-01	ci left: 9.865696e-05	ci right 1.234302e-04	k: 315	n:2850000
STAC3   2850000 perm   4047 sec   (704 perm/sec)   p_kst 1.105263e-04   p_cons 3.045361e-01   p_joint 3.298246e-04

Joint ci ratio: 1.275641e-01	ci left: 3.090121e-04	ci right 3.514509e-04	k: 943	n:2860000
Cons ci ratio: 3.503005e-03	ci left: 3.039831e-01	ci right 3.050502e-01	k: 870917	n:2860000
KS ci ratio: 2.205050e-01	ci left: 9.831200e-05	ci right 1.229986e-04	k: 315	n:2860000
STAC3   2860000 perm   4074 sec   (702 perm/sec)   p_kst 1.101399e-04   p_cons 3.045164e-01   p_joint 3.297203e-04

Joint ci ratio: 1.274292e-01	ci left: 3.086100e-04	ci right 3.509454e-04	k: 945	n:2870000
Cons ci ratio: 3.496981e-03	ci left: 3.039739e-01	ci right 3.050391e-01	k: 873933	n:2870000
KS ci ratio: 2.205050e-01	ci left: 9.796945e-05	ci right 1.225701e-04	k: 315	n:2870000
STAC3   2870000 perm   4100 sec   (700 perm/sec)   p_kst 1.097561e-04   p_cons 3.045063e-01   p_joint 3.292683e-04

Joint ci ratio: 1.273619e-01	ci left: 3.078746e-04	ci right 3.500852e-04	k: 946	n:2880000
Cons ci ratio: 3.490827e-03	ci left: 3.039842e-01	ci right 3.050475e-01	k: 877005	n:2880000
KS ci ratio: 2.205051e-01	ci left: 9.762927e-05	ci right 1.221445e-04	k: 315	n:2880000
STAC3   2880000 perm   4127 sec   (698 perm/sec)   p_kst 1.093750e-04   p_cons 3.045156e-01   p_joint 3.284722e-04

Joint ci ratio: 1.271607e-01	ci left: 3.078143e-04	ci right 3.499449e-04	k: 949	n:2890000
Cons ci ratio: 3.484715e-03	ci left: 3.039933e-01	ci right 3.050548e-01	k: 880074	n:2890000
KS ci ratio: 2.201570e-01	ci left: 9.761838e-05	ci right 1.220869e-04	k: 316	n:2890000
STAC3   2890000 perm   4153 sec   (696 perm/sec)   p_kst 1.093426e-04   p_cons 3.045239e-01   p_joint 3.283737e-04

Joint ci ratio: 1.270938e-01	ci left: 3.070867e-04	ci right 3.490940e-04	k: 950	n:2900000
Cons ci ratio: 3.478711e-03	ci left: 3.039931e-01	ci right 3.050528e-01	k: 883116	n:2900000
KS ci ratio: 2.201571e-01	ci left: 9.728177e-05	ci right 1.216659e-04	k: 316	n:2900000
STAC3   2900000 perm   4180 sec   (694 perm/sec)   p_kst 1.089655e-04   p_cons 3.045228e-01   p_joint 3.275862e-04

Joint ci ratio: 1.269604e-01	ci left: 3.066969e-04	ci right 3.486035e-04	k: 952	n:2910000
Cons ci ratio: 3.472678e-03	ci left: 3.040001e-01	ci right 3.050580e-01	k: 886179	n:2910000
KS ci ratio: 2.201571e-01	ci left: 9.694746e-05	ci right 1.212478e-04	k: 316	n:2910000
STAC3   2910000 perm   4207 sec   (692 perm/sec)   p_kst 1.085911e-04   p_cons 3.045289e-01   p_joint 3.271478e-04

Joint ci ratio: 1.310843e-01	ci left: 2.860928e-04	ci right 3.265528e-04	k: 893	n:2920000
Cons ci ratio: 3.466862e-03	ci left: 3.039845e-01	ci right 3.050405e-01	k: 889176	n:2920000
KS ci ratio: 2.201571e-01	ci left: 9.661545e-05	ci right 1.208326e-04	k: 316	n:2920000
STAC3   2920000 perm   4234 sec   (690 perm/sec)   p_kst 1.082192e-04   p_cons 3.045123e-01   p_joint 3.058219e-04

Joint ci ratio: 1.309380e-01	ci left: 2.857766e-04	ci right 3.261432e-04	k: 895	n:2930000
Cons ci ratio: 3.460799e-03	ci left: 3.040028e-01	ci right 3.050570e-01	k: 892272	n:2930000
KS ci ratio: 2.194659e-01	ci left: 9.693072e-05	ci right 1.211403e-04	k: 318	n:2930000
STAC3   2930000 perm   4261 sec   (688 perm/sec)   p_kst 1.085324e-04   p_cons 3.045297e-01   p_joint 3.054608e-04

Joint ci ratio: 1.305017e-01	ci left: 2.867787e-04	ci right 3.271414e-04	k: 901	n:2940000
Cons ci ratio: 3.454948e-03	ci left: 3.039988e-01	ci right 3.050512e-01	k: 895303	n:2940000
KS ci ratio: 2.181026e-01	ci left: 9.788702e-05	ci right 1.221633e-04	k: 322	n:2940000
STAC3   2940000 perm   4288 sec   (686 perm/sec)   p_kst 1.095238e-04   p_cons 3.045248e-01   p_joint 3.064626e-04

Joint ci ratio: 1.301414e-01	ci left: 2.874462e-04	ci right 3.277825e-04	k: 906	n:2950000
Cons ci ratio: 3.449162e-03	ci left: 3.039905e-01	ci right 3.050411e-01	k: 898321	n:2950000
KS ci ratio: 2.177658e-01	ci left: 9.787568e-05	ci right 1.221066e-04	k: 323	n:2950000
STAC3   2950000 perm   4316 sec   (684 perm/sec)   p_kst 1.094915e-04   p_cons 3.045156e-01   p_joint 3.071186e-04

Joint ci ratio: 1.299982e-01	ci left: 2.871288e-04	ci right 3.273728e-04	k: 908	n:2960000
Cons ci ratio: 3.443439e-03	ci left: 3.039781e-01	ci right 3.050270e-01	k: 901327	n:2960000
KS ci ratio: 2.177658e-01	ci left: 9.754502e-05	ci right 1.216941e-04	k: 323	n:2960000
STAC3   2960000 perm   4343 sec   (682 perm/sec)   p_kst 1.091216e-04   p_cons 3.045024e-01   p_joint 3.067568e-04

Joint ci ratio: 1.298555e-01	ci left: 2.868136e-04	ci right 3.269658e-04	k: 910	n:2970000
Cons ci ratio: 3.437383e-03	ci left: 3.040103e-01	ci right 3.050574e-01	k: 904465	n:2970000
KS ci ratio: 2.174305e-01	ci left: 9.753494e-05	ci right 1.216394e-04	k: 324	n:2970000
STAC3   2970000 perm   4370 sec   (680 perm/sec)   p_kst 1.090909e-04   p_cons 3.045337e-01   p_joint 3.063973e-04

Joint ci ratio: 1.297132e-01	ci left: 2.865005e-04	ci right 3.265616e-04	k: 912	n:2980000
Cons ci ratio: 3.431508e-03	ci left: 3.040238e-01	ci right 3.050692e-01	k: 907548	n:2980000
KS ci ratio: 2.174306e-01	ci left: 9.720764e-05	ci right 1.212312e-04	k: 324	n:2980000
STAC3   2980000 perm   4398 sec   (678 perm/sec)   p_kst 1.087248e-04   p_cons 3.045463e-01   p_joint 3.060403e-04

Joint ci ratio: 1.295006e-01	ci left: 2.865131e-04	ci right 3.265052e-04	k: 915	n:2990000
Cons ci ratio: 3.425980e-03	ci left: 3.039981e-01	ci right 3.050417e-01	k: 910514	n:2990000
KS ci ratio: 2.170968e-01	ci left: 9.719878e-05	ci right 1.211783e-04	k: 325	n:2990000
STAC3   2990000 perm   4426 sec   (676 perm/sec)   p_kst 1.086957e-04   p_cons 3.045197e-01   p_joint 3.060201e-04

Joint ci ratio: 1.305021e-01	ci left: 2.810431e-04	ci right 3.205986e-04	k: 901	n:3000000
Cons ci ratio: 3.420486e-03	ci left: 3.039716e-01	ci right 3.050134e-01	k: 913477	n:3000000
KS ci ratio: 2.170969e-01	ci left: 9.687478e-05	ci right 1.207744e-04	k: 325	n:3000000
STAC3   3000000 perm   4453 sec   (674 perm/sec)   p_kst 1.083333e-04   p_cons 3.044923e-01   p_joint 3.003333e-04

Joint ci ratio: 1.303577e-01	ci left: 2.807521e-04	ci right 3.202196e-04	k: 903	n:3010000
Cons ci ratio: 3.414883e-03	ci left: 3.039622e-01	ci right 3.050023e-01	k: 916491	n:3010000
KS ci ratio: 2.164340e-01	ci left: 9.718132e-05	ci right 1.210736e-04	k: 327	n:3010000
STAC3   3010000 perm   4481 sec   (672 perm/sec)   p_kst 1.086379e-04   p_cons 3.044821e-01   p_joint 3.000000e-04

Joint ci ratio: 1.307926e-01	ci left: 2.779006e-04	ci right 3.171077e-04	k: 897	n:3020000
Cons ci ratio: 3.409072e-03	ci left: 3.039820e-01	ci right 3.050204e-01	k: 919593	n:3020000
KS ci ratio: 2.161048e-01	ci left: 9.717272e-05	ci right 1.210218e-04	k: 328	n:3020000
STAC3   3020000 perm   4508 sec   (670 perm/sec)   p_kst 1.086093e-04   p_cons 3.045010e-01   p_joint 2.970199e-04

Joint ci ratio: 1.306472e-01	ci left: 2.776219e-04	ci right 3.167428e-04	k: 899	n:3030000
Cons ci ratio: 3.403391e-03	ci left: 3.039891e-01	ci right 3.050258e-01	k: 922657	n:3030000
KS ci ratio: 2.157771e-01	ci left: 9.716420e-05	ci right 1.209702e-04	k: 329	n:3030000
STAC3   3030000 perm   4537 sec   (668 perm/sec)   p_kst 1.085809e-04   p_cons 3.045073e-01   p_joint 2.966997e-04

Joint ci ratio: 1.304300e-01	ci left: 2.776633e-04	ci right 3.167199e-04	k: 902	n:3040000
Cons ci ratio: 3.397794e-03	ci left: 3.039893e-01	ci right 3.050242e-01	k: 925700	n:3040000
KS ci ratio: 2.154509e-01	ci left: 9.715577e-05	ci right 1.209190e-04	k: 330	n:3040000
STAC3   3040000 perm   4565 sec   (666 perm/sec)   p_kst 1.085526e-04   p_cons 3.045066e-01   p_joint 2.967105e-04

Joint ci ratio: 1.303579e-01	ci left: 2.770701e-04	ci right 3.160201e-04	k: 903	n:3050000
Cons ci ratio: 3.392167e-03	ci left: 3.039967e-01	ci right 3.050299e-01	k: 928765	n:3050000
KS ci ratio: 2.151262e-01	ci left: 9.714741e-05	ci right 1.208680e-04	k: 331	n:3050000
STAC3   3050000 perm   4593 sec   (664 perm/sec)   p_kst 1.085246e-04   p_cons 3.045131e-01   p_joint 2.960656e-04

Joint ci ratio: 1.297848e-01	ci left: 2.786940e-04	ci right 3.176867e-04	k: 911	n:3060000
Cons ci ratio: 3.386524e-03	ci left: 3.040096e-01	ci right 3.050411e-01	k: 931847	n:3060000
KS ci ratio: 2.128933e-01	ci left: 9.899493e-05	ci right 1.228830e-04	k: 338	n:3060000
STAC3   3060000 perm   4621 sec   (662 perm/sec)   p_kst 1.104575e-04   p_cons 3.045252e-01   p_joint 2.977124e-04

Joint ci ratio: 1.296428e-01	ci left: 2.784165e-04	ci right 3.173245e-04	k: 913	n:3070000
Cons ci ratio: 3.381101e-03	ci left: 3.039983e-01	ci right 3.050282e-01	k: 934855	n:3070000
KS ci ratio: 2.125800e-01	ci left: 9.898085e-05	ci right 1.228258e-04	k: 339	n:3070000
STAC3   3070000 perm   4649 sec   (660 perm/sec)   p_kst 1.104235e-04   p_cons 3.045130e-01   p_joint 2.973941e-04

Joint ci ratio: 1.295012e-01	ci left: 2.781409e-04	ci right 3.169646e-04	k: 915	n:3080000
Cons ci ratio: 3.375799e-03	ci left: 3.039750e-01	ci right 3.050032e-01	k: 937826	n:3080000
KS ci ratio: 2.122681e-01	ci left: 9.896689e-05	ci right 1.227689e-04	k: 340	n:3080000
STAC3   3080000 perm   4678 sec   (658 perm/sec)   p_kst 1.103896e-04   p_cons 3.044890e-01   p_joint 2.970779e-04

Joint ci ratio: 1.294306e-01	ci left: 2.775539e-04	ci right 3.162729e-04	k: 916	n:3090000
Cons ci ratio: 3.370386e-03	ci left: 3.039691e-01	ci right 3.049956e-01	k: 940850	n:3090000
KS ci ratio: 2.119576e-01	ci left: 9.895304e-05	ci right 1.227124e-04	k: 341	n:3090000
STAC3   3090000 perm   4706 sec   (657 perm/sec)   p_kst 1.103560e-04   p_cons 3.044822e-01   p_joint 2.964401e-04

Joint ci ratio: 1.292194e-01	ci left: 2.775950e-04	ci right 3.162517e-04	k: 919	n:3100000
Cons ci ratio: 3.364927e-03	ci left: 3.039723e-01	ci right 3.049971e-01	k: 943902	n:3100000
KS ci ratio: 2.116484e-01	ci left: 9.893931e-05	ci right 1.226562e-04	k: 342	n:3100000
STAC3   3100000 perm   4734 sec   (655 perm/sec)   p_kst 1.103226e-04   p_cons 3.044845e-01   p_joint 2.964516e-04

Joint ci ratio: 1.290092e-01	ci left: 2.776359e-04	ci right 3.162306e-04	k: 922	n:3110000
Cons ci ratio: 3.359625e-03	ci left: 3.039590e-01	ci right 3.049822e-01	k: 946903	n:3110000
KS ci ratio: 2.113405e-01	ci left: 9.892569e-05	ci right 1.226004e-04	k: 343	n:3110000
STAC3   3110000 perm   4763 sec   (653 perm/sec)   p_kst 1.102894e-04   p_cons 3.044704e-01   p_joint 2.964630e-04

Joint ci ratio: 1.286611e-01	ci left: 2.782969e-04	ci right 3.168712e-04	k: 927	n:3120000
Cons ci ratio: 3.354312e-03	ci left: 3.039503e-01	ci right 3.049719e-01	k: 949918	n:3120000
KS ci ratio: 2.113405e-01	ci left: 9.860862e-05	ci right 1.222075e-04	k: 343	n:3120000
STAC3   3120000 perm   4792 sec   (651 perm/sec)   p_kst 1.099359e-04   p_cons 3.044609e-01   p_joint 2.971154e-04

Joint ci ratio: 1.284537e-01	ci left: 2.783354e-04	ci right 3.168481e-04	k: 930	n:3130000
Cons ci ratio: 3.349047e-03	ci left: 3.039388e-01	ci right 3.049587e-01	k: 952924	n:3130000
KS ci ratio: 2.110340e-01	ci left: 9.859617e-05	ci right 1.221534e-04	k: 344	n:3130000
STAC3   3130000 perm   4820 sec   (649 perm/sec)   p_kst 1.099042e-04   p_cons 3.044486e-01   p_joint 2.971246e-04

Joint ci ratio: 1.281786e-01	ci left: 2.786820e-04	ci right 3.171538e-04	k: 934	n:3140000
Cons ci ratio: 3.343623e-03	ci left: 3.039506e-01	ci right 3.049689e-01	k: 956003	n:3140000
KS ci ratio: 2.110341e-01	ci left: 9.828216e-05	ci right 1.217644e-04	k: 344	n:3140000
STAC3   3140000 perm   4849 sec   (648 perm/sec)   p_kst 1.095541e-04   p_cons 3.044596e-01   p_joint 2.974522e-04

Joint ci ratio: 1.279735e-01	ci left: 2.787192e-04	ci right 3.171299e-04	k: 937	n:3150000
Cons ci ratio: 3.338538e-03	ci left: 3.039226e-01	ci right 3.049393e-01	k: 958957	n:3150000
KS ci ratio: 2.107289e-01	ci left: 9.827085e-05	ci right 1.217120e-04	k: 345	n:3150000
STAC3   3150000 perm   4878 sec   (646 perm/sec)   p_kst 1.095238e-04   p_cons 3.044308e-01   p_joint 2.974603e-04

Joint ci ratio: 1.277014e-01	ci left: 2.790625e-04	ci right 3.174326e-04	k: 941	n:3160000
Cons ci ratio: 3.333367e-03	ci left: 3.039088e-01	ci right 3.049238e-01	k: 961955	n:3160000
KS ci ratio: 2.101225e-01	ci left: 9.855943e-05	ci right 1.219931e-04	k: 347	n:3160000
STAC3   3160000 perm   4907 sec   (644 perm/sec)   p_kst 1.098101e-04   p_cons 3.044161e-01   p_joint 2.977848e-04

Joint ci ratio: 1.274986e-01	ci left: 2.790983e-04	ci right 3.174078e-04	k: 944	n:3170000
Cons ci ratio: 3.328135e-03	ci left: 3.039058e-01	ci right 3.049192e-01	k: 964987	n:3170000
KS ci ratio: 2.098212e-01	ci left: 9.854739e-05	ci right 1.219402e-04	k: 348	n:3170000
STAC3   3170000 perm   4936 sec   (642 perm/sec)   p_kst 1.097792e-04   p_cons 3.044123e-01   p_joint 2.977918e-04

Joint ci ratio: 1.272967e-01	ci left: 2.791340e-04	ci right 3.173831e-04	k: 947	n:3180000
Cons ci ratio: 3.322854e-03	ci left: 3.039122e-01	ci right 3.049240e-01	k: 968049	n:3180000
KS ci ratio: 2.098212e-01	ci left: 9.823749e-05	ci right 1.215568e-04	k: 348	n:3180000
STAC3   3180000 perm   4966 sec   (640 perm/sec)   p_kst 1.094340e-04   p_cons 3.044179e-01   p_joint 2.977987e-04

Joint ci ratio: 1.269623e-01	ci left: 2.797765e-04	ci right 3.180053e-04	k: 952	n:3190000
Cons ci ratio: 3.317775e-03	ci left: 3.038960e-01	ci right 3.049062e-01	k: 971039	n:3190000
KS ci ratio: 2.098213e-01	ci left: 9.792953e-05	ci right 1.211757e-04	k: 348	n:3190000
STAC3   3190000 perm   4995 sec   (639 perm/sec)   p_kst 1.090909e-04   p_cons 3.044009e-01   p_joint 2.984326e-04

Joint ci ratio: 1.266966e-01	ci left: 2.801126e-04	ci right 3.183012e-04	k: 956	n:3200000
Cons ci ratio: 3.312486e-03	ci left: 3.039096e-01	ci right 3.049183e-01	k: 974124	n:3200000
KS ci ratio: 2.095213e-01	ci left: 9.791960e-05	ci right 1.211259e-04	k: 349	n:3200000
STAC3   3200000 perm   5025 sec   (637 perm/sec)   p_kst 1.090625e-04   p_cons 3.044137e-01   p_joint 2.987500e-04

Joint ci ratio: 1.274988e-01	ci left: 2.756204e-04	ci right 3.134526e-04	k: 944	n:3210000
Cons ci ratio: 3.307557e-03	ci left: 3.038804e-01	ci right 3.048875e-01	k: 977072	n:3210000
KS ci ratio: 2.092226e-01	ci left: 9.790974e-05	ci right 1.210764e-04	k: 350	n:3210000
STAC3   3210000 perm   5055 sec   (635 perm/sec)   p_kst 1.090343e-04   p_cons 3.043838e-01   p_joint 2.940810e-04

Joint ci ratio: 1.279739e-01	ci left: 2.726600e-04	ci right 3.102358e-04	k: 937	n:3220000
Cons ci ratio: 3.302397e-03	ci left: 3.038838e-01	ci right 3.048893e-01	k: 980124	n:3220000
KS ci ratio: 2.092227e-01	ci left: 9.760567e-05	ci right 1.207004e-04	k: 350	n:3220000
STAC3   3220000 perm   5084 sec   (633 perm/sec)   p_kst 1.086957e-04   p_cons 3.043863e-01   p_joint 2.909938e-04

Joint ci ratio: 1.277697e-01	ci left: 2.727149e-04	ci right 3.102338e-04	k: 940	n:3230000
Cons ci ratio: 3.297298e-03	ci left: 3.038824e-01	ci right 3.048864e-01	k: 983161	n:3230000
KS ci ratio: 2.089253e-01	ci left: 9.759688e-05	ci right 1.206525e-04	k: 351	n:3230000
STAC3   3230000 perm   5114 sec   (632 perm/sec)   p_kst 1.086687e-04   p_cons 3.043842e-01   p_joint 2.910217e-04

Joint ci ratio: 1.276342e-01	ci left: 2.724708e-04	ci right 3.099133e-04	k: 942	n:3240000
Cons ci ratio: 3.292272e-03	ci left: 3.038746e-01	ci right 3.048770e-01	k: 986177	n:3240000
KS ci ratio: 2.086291e-01	ci left: 9.758816e-05	ci right 1.206049e-04	k: 352	n:3240000
STAC3   3240000 perm   5143 sec   (630 perm/sec)   p_kst 1.086420e-04   p_cons 3.043756e-01   p_joint 2.907407e-04

Joint ci ratio: 1.302870e-01	ci left: 2.603172e-04	ci right 2.968906e-04	k: 904	n:3250000
Cons ci ratio: 3.287253e-03	ci left: 3.038690e-01	ci right 3.048698e-01	k: 989200	n:3250000
KS ci ratio: 2.083343e-01	ci left: 9.757952e-05	ci right 1.205575e-04	k: 353	n:3250000
STAC3   3250000 perm   5173 sec   (628 perm/sec)   p_kst 1.086154e-04   p_cons 3.043692e-01   p_joint 2.781538e-04

Joint ci ratio: 1.301433e-01	ci left: 2.601122e-04	ci right 2.966133e-04	k: 906	n:3260000
Cons ci ratio: 3.282316e-03	ci left: 3.038557e-01	ci right 3.048550e-01	k: 992198	n:3260000
KS ci ratio: 2.077482e-01	ci left: 9.786173e-05	ci right 1.208331e-04	k: 355	n:3260000
STAC3   3260000 perm   5203 sec   (627 perm/sec)   p_kst 1.088957e-04   p_cons 3.043552e-01   p_joint 2.779141e-04

Joint ci ratio: 1.297860e-01	ci left: 2.607960e-04	ci right 2.972850e-04	k: 911	n:3270000
Cons ci ratio: 3.277150e-03	ci left: 3.038750e-01	ci right 3.048728e-01	k: 995302	n:3270000
KS ci ratio: 2.068783e-01	ci left: 9.843227e-05	ci right 1.214286e-04	k: 358	n:3270000
STAC3   3270000 perm   5232 sec   (625 perm/sec)   p_kst 1.094801e-04   p_cons 3.043737e-01   p_joint 2.785933e-04

Joint ci ratio: 1.296440e-01	ci left: 2.605909e-04	ci right 2.970082e-04	k: 913	n:3280000
Cons ci ratio: 3.272032e-03	ci left: 3.038911e-01	ci right 3.048873e-01	k: 998396	n:3280000
KS ci ratio: 2.065908e-01	ci left: 9.842126e-05	ci right 1.213790e-04	k: 359	n:3280000
STAC3   3280000 perm   5263 sec   (623 perm/sec)   p_kst 1.094512e-04   p_cons 3.043890e-01   p_joint 2.783537e-04

Joint ci ratio: 1.296440e-01	ci left: 2.597988e-04	ci right 2.961054e-04	k: 913	n:3290000
Cons ci ratio: 3.266980e-03	ci left: 3.039016e-01	ci right 3.048963e-01	k: 1001472	n:3290000
KS ci ratio: 2.065908e-01	ci left: 9.812211e-05	ci right 1.210101e-04	k: 359	n:3290000
STAC3   3290000 perm   5293 sec   (622 perm/sec)   p_kst 1.091185e-04   p_cons 3.043988e-01   p_joint 2.775076e-04

Joint ci ratio: 1.294318e-01	ci left: 2.598912e-04	ci right 2.961467e-04	k: 916	n:3300000
Cons ci ratio: 3.261963e-03	ci left: 3.039105e-01	ci right 3.049038e-01	k: 1004543	n:3300000
KS ci ratio: 2.065908e-01	ci left: 9.782477e-05	ci right 1.206434e-04	k: 359	n:3300000
STAC3   3300000 perm   5323 sec   (620 perm/sec)   p_kst 1.087879e-04   p_cons 3.044070e-01   p_joint 2.775758e-04

Joint ci ratio: 1.294319e-01	ci left: 2.591060e-04	ci right 2.952520e-04	k: 916	n:3310000
Cons ci ratio: 3.257100e-03	ci left: 3.039025e-01	ci right 3.048942e-01	k: 1007558	n:3310000
KS ci ratio: 2.065909e-01	ci left: 9.752922e-05	ci right 1.202789e-04	k: 359	n:3310000
STAC3   3310000 perm   5354 sec   (618 perm/sec)   p_kst 1.084592e-04   p_cons 3.043982e-01   p_joint 2.767372e-04

Joint ci ratio: 1.290804e-01	ci left: 2.597829e-04	ci right 2.959173e-04	k: 921	n:3320000
Cons ci ratio: 3.252098e-03	ci left: 3.039153e-01	ci right 3.049055e-01	k: 1010642	n:3320000
KS ci ratio: 2.054525e-01	ci left: 9.837813e-05	ci right 1.211835e-04	k: 363	n:3320000
STAC3   3320000 perm   5384 sec   (617 perm/sec)   p_kst 1.093373e-04   p_cons 3.044102e-01   p_joint 2.774096e-04

Joint ci ratio: 1.287318e-01	ci left: 2.604559e-04	ci right 2.965786e-04	k: 926	n:3330000
Cons ci ratio: 3.247164e-03	ci left: 3.039223e-01	ci right 3.049111e-01	k: 1013707	n:3330000
KS ci ratio: 2.051709e-01	ci left: 9.836756e-05	ci right 1.211353e-04	k: 364	n:3330000
STAC3   3330000 perm   5414 sec   (615 perm/sec)   p_kst 1.093093e-04   p_cons 3.044165e-01   p_joint 2.780781e-04

Joint ci ratio: 1.285239e-01	ci left: 2.605454e-04	ci right 2.966177e-04	k: 929	n:3340000
Cons ci ratio: 3.242352e-03	ci left: 3.039161e-01	ci right 3.049034e-01	k: 1016728	n:3340000
KS ci ratio: 2.046111e-01	ci left: 9.864113e-05	ci right 1.214021e-04	k: 366	n:3340000
STAC3   3340000 perm   5444 sec   (613 perm/sec)   p_kst 1.095808e-04   p_cons 3.044096e-01   p_joint 2.781437e-04

Joint ci ratio: 1.284549e-01	ci left: 2.600565e-04	ci right 2.960404e-04	k: 930	n:3350000
Cons ci ratio: 3.237473e-03	ci left: 3.039216e-01	ci right 3.049074e-01	k: 1019788	n:3350000
KS ci ratio: 2.043329e-01	ci left: 9.862991e-05	ci right 1.213535e-04	k: 367	n:3350000
STAC3   3350000 perm   5474 sec   (612 perm/sec)   p_kst 1.095522e-04   p_cons 3.044143e-01   p_joint 2.776119e-04

Joint ci ratio: 1.282485e-01	ci left: 2.601467e-04	ci right 2.960808e-04	k: 933	n:3360000
Cons ci ratio: 3.232577e-03	ci left: 3.039321e-01	ci right 3.049165e-01	k: 1022865	n:3360000
KS ci ratio: 2.035050e-01	ci left: 9.918364e-05	ci right 1.219307e-04	k: 370	n:3360000
STAC3   3360000 perm   5505 sec   (610 perm/sec)   p_kst 1.101190e-04   p_cons 3.044241e-01   p_joint 2.776786e-04

Joint ci ratio: 1.286626e-01	ci left: 2.576516e-04	ci right 2.933647e-04	k: 927	n:3370000
Cons ci ratio: 3.227735e-03	ci left: 3.039384e-01	ci right 3.049213e-01	k: 1025928	n:3370000
KS ci ratio: 2.035050e-01	ci left: 9.888932e-05	ci right 1.215689e-04	k: 370	n:3370000
STAC3   3370000 perm   5535 sec   (609 perm/sec)   p_kst 1.097923e-04   p_cons 3.044297e-01   p_joint 2.750742e-04

Joint ci ratio: 1.285242e-01	ci left: 2.574620e-04	ci right 2.931075e-04	k: 929	n:3380000
Cons ci ratio: 3.223022e-03	ci left: 3.039305e-01	ci right 3.049119e-01	k: 1028943	n:3380000
KS ci ratio: 2.029587e-01	ci left: 9.915836e-05	ci right 1.218310e-04	k: 372	n:3380000
STAC3   3380000 perm   5567 sec   (607 perm/sec)   p_kst 1.100592e-04   p_cons 3.044210e-01   p_joint 2.748521e-04

Joint ci ratio: 1.284551e-01	ci left: 2.569880e-04	ci right 2.925473e-04	k: 930	n:3390000
Cons ci ratio: 3.218335e-03	ci left: 3.039220e-01	ci right 3.049020e-01	k: 1031956	n:3390000
KS ci ratio: 2.029587e-01	ci left: 9.886585e-05	ci right 1.214716e-04	k: 372	n:3390000
STAC3   3390000 perm   5597 sec   (606 perm/sec)   p_kst 1.097345e-04   p_cons 3.044118e-01   p_joint 2.743363e-04

Joint ci ratio: 1.283863e-01	ci left: 2.565168e-04	ci right 2.919905e-04	k: 931	n:3400000
Cons ci ratio: 3.213570e-03	ci left: 3.039265e-01	ci right 3.049050e-01	k: 1035013	n:3400000
KS ci ratio: 2.026872e-01	ci left: 9.885425e-05	ci right 1.214234e-04	k: 373	n:3400000
STAC3   3400000 perm   5628 sec   (604 perm/sec)   p_kst 1.097059e-04   p_cons 3.044156e-01   p_joint 2.738235e-04

Joint ci ratio: 1.281801e-01	ci left: 2.566161e-04	ci right 2.920422e-04	k: 934	n:3410000
Cons ci ratio: 3.209068e-03	ci left: 3.038990e-01	ci right 3.048761e-01	k: 1037961	n:3410000
KS ci ratio: 2.026872e-01	ci left: 9.856435e-05	ci right 1.210673e-04	k: 373	n:3410000
STAC3   3410000 perm   5659 sec   (603 perm/sec)   p_kst 1.093842e-04   p_cons 3.043874e-01   p_joint 2.739003e-04

Joint ci ratio: 1.283864e-01	ci left: 2.550167e-04	ci right 2.902829e-04	k: 931	n:3420000
Cons ci ratio: 3.204459e-03	ci left: 3.038884e-01	ci right 3.048640e-01	k: 1040966	n:3420000
KS ci ratio: 2.026873e-01	ci left: 9.827615e-05	ci right 1.207133e-04	k: 373	n:3420000
STAC3   3420000 perm   5690 sec   (601 perm/sec)   p_kst 1.090643e-04   p_cons 3.043760e-01   p_joint 2.722222e-04

Joint ci ratio: 1.283864e-01	ci left: 2.542732e-04	ci right 2.894366e-04	k: 931	n:3430000
Cons ci ratio: 3.199996e-03	ci left: 3.038612e-01	ci right 3.048354e-01	k: 1043914	n:3430000
KS ci ratio: 2.026873e-01	ci left: 9.798963e-05	ci right 1.203614e-04	k: 373	n:3430000
STAC3   3430000 perm   5721 sec   (600 perm/sec)   p_kst 1.087464e-04   p_cons 3.043481e-01   p_joint 2.714286e-04

Joint ci ratio: 1.281803e-01	ci left: 2.543781e-04	ci right 2.894953e-04	k: 934	n:3440000
Cons ci ratio: 3.195322e-03	ci left: 3.038644e-01	ci right 3.048371e-01	k: 1046966	n:3440000
KS ci ratio: 2.026873e-01	ci left: 9.770478e-05	ci right 1.200115e-04	k: 373	n:3440000
STAC3   3440000 perm   5753 sec   (598 perm/sec)   p_kst 1.084302e-04   p_cons 3.043506e-01   p_joint 2.715116e-04

Joint ci ratio: 1.279751e-01	ci left: 2.544825e-04	ci right 2.895536e-04	k: 937	n:3450000
Cons ci ratio: 3.190794e-03	ci left: 3.038510e-01	ci right 3.048224e-01	k: 1049961	n:3450000
KS ci ratio: 2.026874e-01	ci left: 9.742157e-05	ci right 1.196637e-04	k: 373	n:3450000
STAC3   3450000 perm   5785 sec   (596 perm/sec)   p_kst 1.081159e-04   p_cons 3.043365e-01   p_joint 2.715942e-04

Joint ci ratio: 1.276353e-01	ci left: 2.551459e-04	ci right 2.902080e-04	k: 942	n:3460000
Cons ci ratio: 3.186135e-03	ci left: 3.038577e-01	ci right 3.048276e-01	k: 1053025	n:3460000
KS ci ratio: 2.018792e-01	ci left: 9.796315e-05	ci right 1.202287e-04	k: 376	n:3460000
STAC3   3460000 perm   5816 sec   (595 perm/sec)   p_kst 1.086705e-04   p_cons 3.043425e-01   p_joint 2.722543e-04

Joint ci ratio: 1.275678e-01	ci left: 2.546896e-04	ci right 2.896690e-04	k: 943	n:3470000
Cons ci ratio: 3.181708e-03	ci left: 3.038361e-01	ci right 3.048046e-01	k: 1055991	n:3470000
KS ci ratio: 2.018793e-01	ci left: 9.768083e-05	ci right 1.198822e-04	k: 376	n:3470000
STAC3   3470000 perm   5848 sec   (593 perm/sec)   p_kst 1.083573e-04   p_cons 3.043202e-01   p_joint 2.717579e-04

Joint ci ratio: 1.273655e-01	ci left: 2.547923e-04	ci right 2.897262e-04	k: 946	n:3480000
Cons ci ratio: 3.177175e-03	ci left: 3.038313e-01	ci right 3.047984e-01	k: 1059015	n:3480000
KS ci ratio: 2.018793e-01	ci left: 9.740014e-05	ci right 1.195377e-04	k: 376	n:3480000
STAC3   3480000 perm   5880 sec   (592 perm/sec)   p_kst 1.080460e-04   p_cons 3.043147e-01   p_joint 2.718391e-04

Joint ci ratio: 1.273656e-01	ci left: 2.540622e-04	ci right 2.888960e-04	k: 946	n:3490000
Cons ci ratio: 3.172594e-03	ci left: 3.038353e-01	ci right 3.048011e-01	k: 1062070	n:3490000
KS ci ratio: 2.018793e-01	ci left: 9.712105e-05	ci right 1.191952e-04	k: 376	n:3490000
STAC3   3490000 perm   5912 sec   (590 perm/sec)   p_kst 1.077364e-04   p_cons 3.043181e-01   p_joint 2.710602e-04

Joint ci ratio: 1.271643e-01	ci left: 2.541662e-04	ci right 2.889550e-04	k: 949	n:3500000
Cons ci ratio: 3.168025e-03	ci left: 3.038405e-01	ci right 3.048049e-01	k: 1065129	n:3500000
KS ci ratio: 2.016121e-01	ci left: 9.711485e-05	ci right 1.191548e-04	k: 377	n:3500000
STAC3   3500000 perm   5944 sec   (589 perm/sec)   p_kst 1.077143e-04   p_cons 3.043226e-01   p_joint 2.711429e-04

Joint ci ratio: 1.271644e-01	ci left: 2.534421e-04	ci right 2.881318e-04	k: 949	n:3510000
Cons ci ratio: 3.163595e-03	ci left: 3.038298e-01	ci right 3.047928e-01	k: 1068132	n:3510000
KS ci ratio: 2.016122e-01	ci left: 9.683816e-05	ci right 1.188153e-04	k: 377	n:3510000
STAC3   3510000 perm   5976 sec   (587 perm/sec)   p_kst 1.074074e-04   p_cons 3.043111e-01   p_joint 2.703704e-04

Joint ci ratio: 1.270975e-01	ci left: 2.529971e-04	ci right 2.876064e-04	k: 950	n:3520000
Cons ci ratio: 3.159153e-03	ci left: 3.038230e-01	ci right 3.047847e-01	k: 1071149	n:3520000
KS ci ratio: 2.016122e-01	ci left: 9.656305e-05	ci right 1.184778e-04	k: 377	n:3520000
STAC3   3520000 perm   6008 sec   (586 perm/sec)   p_kst 1.071023e-04   p_cons 3.043037e-01   p_joint 2.698864e-04

Joint ci ratio: 1.267647e-01	ci left: 2.536519e-04	ci right 2.882530e-04	k: 955	n:3530000
Cons ci ratio: 3.154850e-03	ci left: 3.038002e-01	ci right 3.047604e-01	k: 1074109	n:3530000
KS ci ratio: 2.008168e-01	ci left: 9.709655e-05	ci right 1.190348e-04	k: 380	n:3530000
STAC3   3530000 perm   6040 sec   (584 perm/sec)   p_kst 1.076487e-04   p_cons 3.042802e-01   p_joint 2.705382e-04

Joint ci ratio: 1.266985e-01	ci left: 2.532089e-04	ci right 2.877302e-04	k: 956	n:3540000
Cons ci ratio: 3.150530e-03	ci left: 3.037823e-01	ci right 3.047412e-01	k: 1077086	n:3540000
KS ci ratio: 2.005538e-01	ci left: 9.709056e-05	ci right 1.189952e-04	k: 381	n:3540000
STAC3   3540000 perm   6072 sec   (583 perm/sec)   p_kst 1.076271e-04   p_cons 3.042616e-01   p_joint 2.700565e-04

Joint ci ratio: 1.266323e-01	ci left: 2.527684e-04	ci right 2.872103e-04	k: 957	n:3550000
Cons ci ratio: 3.146017e-03	ci left: 3.037927e-01	ci right 3.047502e-01	k: 1080163	n:3550000
KS ci ratio: 2.005538e-01	ci left: 9.681706e-05	ci right 1.186600e-04	k: 381	n:3550000
STAC3   3550000 perm   6104 sec   (582 perm/sec)   p_kst 1.073239e-04   p_cons 3.042713e-01   p_joint 2.695775e-04

Joint ci ratio: 1.263688e-01	ci left: 2.531464e-04	ci right 2.875626e-04	k: 961	n:3560000
Cons ci ratio: 3.141645e-03	ci left: 3.037867e-01	ci right 3.047428e-01	k: 1083182	n:3560000
KS ci ratio: 1.997709e-01	ci left: 9.734557e-05	ci right 1.192115e-04	k: 384	n:3560000
STAC3   3560000 perm   6137 sec   (580 perm/sec)   p_kst 1.078652e-04   p_cons 3.042646e-01   p_joint 2.699438e-04

Joint ci ratio: 1.275682e-01	ci left: 2.475554e-04	ci right 2.815551e-04	k: 943	n:3570000
Cons ci ratio: 3.137183e-03	ci left: 3.037953e-01	ci right 3.047501e-01	k: 1086253	n:3570000
KS ci ratio: 1.995119e-01	ci left: 9.733900e-05	ci right 1.191717e-04	k: 385	n:3570000
STAC3   3570000 perm   6170 sec   (579 perm/sec)   p_kst 1.078431e-04   p_cons 3.042725e-01   p_joint 2.641457e-04

Joint ci ratio: 1.274333e-01	ci left: 2.474047e-04	ci right 2.813451e-04	k: 945	n:3580000
Cons ci ratio: 3.132839e-03	ci left: 3.037905e-01	ci right 3.047439e-01	k: 1089276	n:3580000
KS ci ratio: 1.989970e-01	ci left: 9.759790e-05	ci right 1.194253e-04	k: 387	n:3580000
STAC3   3580000 perm   6203 sec   (577 perm/sec)   p_kst 1.081006e-04   p_cons 3.042670e-01   p_joint 2.639665e-04

Joint ci ratio: 1.272989e-01	ci left: 2.472549e-04	ci right 2.811363e-04	k: 947	n:3590000
Cons ci ratio: 3.128454e-03	ci left: 3.037937e-01	ci right 3.047459e-01	k: 1092328	n:3590000
KS ci ratio: 1.987411e-01	ci left: 9.759072e-05	ci right 1.193851e-04	k: 388	n:3590000
STAC3   3590000 perm   6235 sec   (576 perm/sec)   p_kst 1.080780e-04   p_cons 3.042696e-01   p_joint 2.637883e-04

Joint ci ratio: 1.271648e-01	ci left: 2.471060e-04	ci right 2.809286e-04	k: 949	n:3600000
Cons ci ratio: 3.124158e-03	ci left: 3.037872e-01	ci right 3.047381e-01	k: 1095345	n:3600000
KS ci ratio: 1.984861e-01	ci left: 9.758360e-05	ci right 1.193450e-04	k: 389	n:3600000
STAC3   3600000 perm   6268 sec   (574 perm/sec)   p_kst 1.080556e-04   p_cons 3.042625e-01   p_joint 2.636111e-04

Joint ci ratio: 1.281126e-01	ci left: 2.426671e-04	ci right 2.761486e-04	k: 935	n:3610000
Cons ci ratio: 3.119858e-03	ci left: 3.037839e-01	ci right 3.047334e-01	k: 1098373	n:3610000
KS ci ratio: 1.984862e-01	ci left: 9.731328e-05	ci right 1.190144e-04	k: 389	n:3610000
STAC3   3610000 perm   6301 sec   (573 perm/sec)   p_kst 1.077562e-04   p_cons 3.042584e-01   p_joint 2.590028e-04

Joint ci ratio: 1.279078e-01	ci left: 2.427990e-04	ci right 2.762410e-04	k: 938	n:3620000
Cons ci ratio: 3.115594e-03	ci left: 3.037780e-01	ci right 3.047262e-01	k: 1101392	n:3620000
KS ci ratio: 1.984862e-01	ci left: 9.704446e-05	ci right 1.186856e-04	k: 389	n:3620000
STAC3   3620000 perm   6333 sec   (572 perm/sec)   p_kst 1.074586e-04   p_cons 3.042519e-01   p_joint 2.591160e-04

Joint ci ratio: 1.279078e-01	ci left: 2.421301e-04	ci right 2.754800e-04	k: 938	n:3630000
Cons ci ratio: 3.111327e-03	ci left: 3.037749e-01	ci right 3.047218e-01	k: 1104421	n:3630000
KS ci ratio: 1.979792e-01	ci left: 9.730074e-05	ci right 1.189370e-04	k: 391	n:3630000
STAC3   3630000 perm   6366 sec   (570 perm/sec)   p_kst 1.077135e-04   p_cons 3.042482e-01   p_joint 2.584022e-04

Joint ci ratio: 1.277718e-01	ci left: 2.419968e-04	ci right 2.752902e-04	k: 940	n:3640000
Cons ci ratio: 3.106936e-03	ci left: 3.037911e-01	ci right 3.047367e-01	k: 1107520	n:3640000
KS ci ratio: 1.977271e-01	ci left: 9.729455e-05	ci right 1.188985e-04	k: 392	n:3640000
STAC3   3640000 perm   6399 sec   (569 perm/sec)   p_kst 1.076923e-04   p_cons 3.042637e-01   p_joint 2.582418e-04

Joint ci ratio: 1.275686e-01	ci left: 2.421295e-04	ci right 2.753841e-04	k: 943	n:3650000
Cons ci ratio: 3.102819e-03	ci left: 3.037724e-01	ci right 3.047167e-01	k: 1110492	n:3650000
KS ci ratio: 1.969767e-01	ci left: 9.780929e-05	ci right 1.194353e-04	k: 395	n:3650000
STAC3   3650000 perm   6431 sec   (568 perm/sec)   p_kst 1.082192e-04   p_cons 3.042444e-01   p_joint 2.583562e-04

Joint ci ratio: 1.272321e-01	ci left: 2.427905e-04	ci right 2.760413e-04	k: 948	n:3660000
Cons ci ratio: 3.098532e-03	ci left: 3.037792e-01	ci right 3.047222e-01	k: 1113557	n:3660000
KS ci ratio: 1.964811e-01	ci left: 9.806159e-05	ci right 1.196823e-04	k: 397	n:3660000
STAC3   3660000 perm   6465 sec   (566 perm/sec)   p_kst 1.084699e-04   p_cons 3.042505e-01   p_joint 2.590164e-04

Joint ci ratio: 1.272321e-01	ci left: 2.421289e-04	ci right 2.752892e-04	k: 948	n:3670000
Cons ci ratio: 3.094327e-03	ci left: 3.037773e-01	ci right 3.047190e-01	k: 1116590	n:3670000
KS ci ratio: 1.964812e-01	ci left: 9.779439e-05	ci right 1.193562e-04	k: 397	n:3670000
STAC3   3670000 perm   6498 sec   (565 perm/sec)   p_kst 1.081744e-04   p_cons 3.042480e-01   p_joint 2.583106e-04

Joint ci ratio: 1.269648e-01	ci left: 2.425234e-04	ci right 2.756626e-04	k: 952	n:3680000
Cons ci ratio: 3.090115e-03	ci left: 3.037786e-01	ci right 3.047190e-01	k: 1119635	n:3680000
KS ci ratio: 1.959893e-01	ci left: 9.804542e-05	ci right 1.196020e-04	k: 399	n:3680000
STAC3   3680000 perm   6531 sec   (563 perm/sec)   p_kst 1.084239e-04   p_cons 3.042486e-01   p_joint 2.586957e-04

Joint ci ratio: 1.265669e-01	ci left: 2.434406e-04	ci right 2.765931e-04	k: 958	n:3690000
Cons ci ratio: 3.085724e-03	ci left: 3.038067e-01	ci right 3.047459e-01	k: 1122779	n:3690000
KS ci ratio: 1.952584e-01	ci left: 9.855291e-05	ci right 1.201306e-04	k: 402	n:3690000
STAC3   3690000 perm   6564 sec   (562 perm/sec)   p_kst 1.089431e-04   p_cons 3.042762e-01   p_joint 2.596206e-04

Joint ci ratio: 1.264352e-01	ci left: 2.433061e-04	ci right 2.764032e-04	k: 960	n:3700000
Cons ci ratio: 3.081476e-03	ci left: 3.038177e-01	ci right 3.047556e-01	k: 1125860	n:3700000
KS ci ratio: 1.947757e-01	ci left: 9.880070e-05	ci right 1.203728e-04	k: 404	n:3700000
STAC3   3700000 perm   6597 sec   (561 perm/sec)   p_kst 1.091892e-04   p_cons 3.042865e-01   p_joint 2.594595e-04

Joint ci ratio: 1.263695e-01	ci left: 2.429113e-04	ci right 2.759362e-04	k: 961	n:3710000
Cons ci ratio: 3.077389e-03	ci left: 3.038089e-01	ci right 3.047456e-01	k: 1128868	n:3710000
KS ci ratio: 1.947757e-01	ci left: 9.853439e-05	ci right 1.200484e-04	k: 404	n:3710000
STAC3   3710000 perm   6630 sec   (560 perm/sec)   p_kst 1.088949e-04   p_cons 3.042771e-01   p_joint 2.590296e-04

Joint ci ratio: 1.262383e-01	ci left: 2.427789e-04	ci right 2.757491e-04	k: 963	n:3720000
Cons ci ratio: 3.073271e-03	ci left: 3.038067e-01	ci right 3.047420e-01	k: 1131900	n:3720000
KS ci ratio: 1.947757e-01	ci left: 9.826951e-05	ci right 1.197257e-04	k: 404	n:3720000
STAC3   3720000 perm   6664 sec   (558 perm/sec)   p_kst 1.086022e-04   p_cons 3.042742e-01   p_joint 2.588710e-04

Joint ci ratio: 1.260423e-01	ci left: 2.429070e-04	ci right 2.758394e-04	k: 966	n:3730000
Cons ci ratio: 3.069187e-03	ci left: 3.038020e-01	ci right 3.047361e-01	k: 1134923	n:3730000
KS ci ratio: 1.942966e-01	ci left: 9.851614e-05	ci right 1.199670e-04	k: 406	n:3730000
STAC3   3730000 perm   6698 sec   (557 perm/sec)   p_kst 1.088472e-04   p_cons 3.042689e-01   p_joint 2.589812e-04

Joint ci ratio: 1.259122e-01	ci left: 2.427754e-04	ci right 2.756535e-04	k: 968	n:3740000
Cons ci ratio: 3.064989e-03	ci left: 3.038153e-01	ci right 3.047481e-01	k: 1138013	n:3740000
KS ci ratio: 1.940583e-01	ci left: 9.850710e-05	ci right 1.199266e-04	k: 407	n:3740000
STAC3   3740000 perm   6731 sec   (556 perm/sec)   p_kst 1.088235e-04   p_cons 3.042816e-01   p_joint 2.588235e-04

Joint ci ratio: 1.257825e-01	ci left: 2.426445e-04	ci right 2.754686e-04	k: 970	n:3750000
Cons ci ratio: 3.060953e-03	ci left: 3.038085e-01	ci right 3.047401e-01	k: 1141028	n:3750000
KS ci ratio: 1.935844e-01	ci left: 9.875187e-05	ci right 1.201659e-04	k: 409	n:3750000
STAC3   3750000 perm   6766 sec   (554 perm/sec)   p_kst 1.090667e-04   p_cons 3.042741e-01   p_joint 2.586667e-04

Joint ci ratio: 1.256532e-01	ci left: 2.425144e-04	ci right 2.752846e-04	k: 972	n:3760000
Cons ci ratio: 3.056834e-03	ci left: 3.038155e-01	ci right 3.047459e-01	k: 1144095	n:3760000
KS ci ratio: 1.928800e-01	ci left: 9.924851e-05	ci right 1.206828e-04	k: 412	n:3760000
STAC3   3760000 perm   6799 sec   (553 perm/sec)   p_kst 1.095745e-04   p_cons 3.042806e-01   p_joint 2.585106e-04

Joint ci ratio: 1.255242e-01	ci left: 2.423850e-04	ci right 2.751015e-04	k: 974	n:3770000
Cons ci ratio: 3.052708e-03	ci left: 3.038258e-01	ci right 3.047549e-01	k: 1147174	n:3770000
KS ci ratio: 1.926469e-01	ci left: 9.923771e-05	ci right 1.206407e-04	k: 413	n:3770000
STAC3   3770000 perm   6834 sec   (552 perm/sec)   p_kst 1.095491e-04   p_cons 3.042902e-01   p_joint 2.583554e-04

Joint ci ratio: 1.253315e-01	ci left: 2.425125e-04	ci right 2.751923e-04	k: 977	n:3780000
Cons ci ratio: 3.048844e-03	ci left: 3.038018e-01	ci right 3.047297e-01	k: 1150124	n:3780000
KS ci ratio: 1.924146e-01	ci left: 9.922697e-05	ci right 1.205988e-04	k: 414	n:3780000
STAC3   3780000 perm   6868 sec   (550 perm/sec)   p_kst 1.095238e-04   p_cons 3.042656e-01   p_joint 2.584656e-04

Joint ci ratio: 1.262386e-01	ci left: 2.382949e-04	ci right 2.706561e-04	k: 963	n:3790000
Cons ci ratio: 3.044839e-03	ci left: 3.037996e-01	ci right 3.047263e-01	k: 1153156	n:3790000
KS ci ratio: 1.919526e-01	ci left: 9.946747e-05	ci right 1.208337e-04	k: 416	n:3790000
STAC3   3790000 perm   6902 sec   (549 perm/sec)   p_kst 1.097625e-04   p_cons 3.042628e-01   p_joint 2.540897e-04

Joint ci ratio: 1.261079e-01	ci left: 2.381775e-04	ci right 2.704868e-04	k: 965	n:3800000
Cons ci ratio: 3.040865e-03	ci left: 3.037953e-01	ci right 3.047208e-01	k: 1156180	n:3800000
KS ci ratio: 1.917229e-01	ci left: 9.945624e-05	ci right 1.207915e-04	k: 417	n:3800000
STAC3   3800000 perm   6936 sec   (548 perm/sec)   p_kst 1.097368e-04   p_cons 3.042579e-01   p_joint 2.539474e-04

Joint ci ratio: 1.259125e-01	ci left: 2.383149e-04	ci right 2.705891e-04	k: 968	n:3810000
Cons ci ratio: 3.036956e-03	ci left: 3.037842e-01	ci right 3.047085e-01	k: 1159178	n:3810000
KS ci ratio: 1.910385e-01	ci left: 9.994488e-05	ci right 1.212995e-04	k: 420	n:3810000
STAC3   3810000 perm   6970 sec   (547 perm/sec)   p_kst 1.102362e-04   p_cons 3.042462e-01   p_joint 2.540682e-04

Joint ci ratio: 1.258476e-01	ci left: 2.379446e-04	ci right 2.701507e-04	k: 969	n:3820000
Cons ci ratio: 3.033015e-03	ci left: 3.037797e-01	ci right 3.047028e-01	k: 1162201	n:3820000
KS ci ratio: 1.908120e-01	ci left: 9.993251e-05	ci right 1.212563e-04	k: 421	n:3820000
STAC3   3820000 perm   7005 sec   (545 perm/sec)   p_kst 1.102094e-04   p_cons 3.042411e-01   p_joint 2.536649e-04

Joint ci ratio: 1.255889e-01	ci left: 2.383349e-04	ci right 2.705226e-04	k: 973	n:3830000
Cons ci ratio: 3.029016e-03	ci left: 3.037855e-01	ci right 3.047073e-01	k: 1165263	n:3830000
KS ci ratio: 1.905864e-01	ci left: 9.992022e-05	ci right 1.212132e-04	k: 422	n:3830000
STAC3   3830000 perm   7039 sec   (544 perm/sec)   p_kst 1.101828e-04   p_cons 3.042462e-01   p_joint 2.540470e-04

Joint ci ratio: 1.255245e-01	ci left: 2.379665e-04	ci right 2.700867e-04	k: 974	n:3840000
Cons ci ratio: 3.025061e-03	ci left: 3.037872e-01	ci right 3.047078e-01	k: 1168310	n:3840000
KS ci ratio: 1.903615e-01	ci left: 9.990801e-05	ci right 1.211704e-04	k: 423	n:3840000
STAC3   3840000 perm   7073 sec   (543 perm/sec)   p_kst 1.101562e-04   p_cons 3.042474e-01   p_joint 2.536458e-04

Joint ci ratio: 1.253960e-01	ci left: 2.378515e-04	ci right 2.699209e-04	k: 976	n:3850000
Cons ci ratio: 3.021153e-03	ci left: 3.037846e-01	ci right 3.047040e-01	k: 1171340	n:3850000
KS ci ratio: 1.901374e-01	ci left: 9.989588e-05	ci right 1.211277e-04	k: 424	n:3850000
STAC3   3850000 perm   7109 sec   (542 perm/sec)   p_kst 1.101299e-04   p_cons 3.042442e-01   p_joint 2.535065e-04

Joint ci ratio: 1.253319e-01	ci left: 2.374863e-04	ci right 2.694889e-04	k: 977	n:3860000
Cons ci ratio: 3.017364e-03	ci left: 3.037675e-01	ci right 3.046857e-01	k: 1174314	n:3860000
KS ci ratio: 1.896916e-01	ci left: 1.001306e-04	ci right 1.213567e-04	k: 426	n:3860000
STAC3   3860000 perm   7144 sec   (540 perm/sec)   p_kst 1.103627e-04   p_cons 3.042264e-01   p_joint 2.531088e-04

Joint ci ratio: 1.252679e-01	ci left: 2.371229e-04	ci right 2.690590e-04	k: 978	n:3870000
Cons ci ratio: 3.013623e-03	ci left: 3.037455e-01	ci right 3.046625e-01	k: 1177269	n:3870000
KS ci ratio: 1.894698e-01	ci left: 1.001180e-04	ci right 1.213137e-04	k: 427	n:3870000
STAC3   3870000 perm   7179 sec   (539 perm/sec)   p_kst 1.103359e-04   p_cons 3.042039e-01   p_joint 2.527132e-04

Joint ci ratio: 1.248857e-01	ci left: 2.380098e-04	ci right 2.699603e-04	k: 984	n:3880000
Cons ci ratio: 3.009732e-03	ci left: 3.037469e-01	ci right 3.046627e-01	k: 1180314	n:3880000
KS ci ratio: 1.892489e-01	ci left: 1.001055e-04	ci right 1.212710e-04	k: 428	n:3880000
STAC3   3880000 perm   7214 sec   (538 perm/sec)   p_kst 1.103093e-04   p_cons 3.042046e-01   p_joint 2.536082e-04

Joint ci ratio: 1.248224e-01	ci left: 2.376470e-04	ci right 2.695314e-04	k: 985	n:3890000
Cons ci ratio: 3.005901e-03	ci left: 3.037418e-01	ci right 3.046564e-01	k: 1183334	n:3890000
KS ci ratio: 1.890287e-01	ci left: 1.000930e-04	ci right 1.212285e-04	k: 429	n:3890000
STAC3   3890000 perm   7249 sec   (537 perm/sec)   p_kst 1.102828e-04   p_cons 3.041990e-01   p_joint 2.532134e-04

Joint ci ratio: 1.246960e-01	ci left: 2.375344e-04	ci right 2.693691e-04	k: 987	n:3900000
Cons ci ratio: 3.002101e-03	ci left: 3.037344e-01	ci right 3.046479e-01	k: 1186345	n:3900000
KS ci ratio: 1.888093e-01	ci left: 1.000807e-04	ci right 1.211862e-04	k: 430	n:3900000
STAC3   3900000 perm   7284 sec   (535 perm/sec)   p_kst 1.102564e-04   p_cons 3.041910e-01   p_joint 2.530769e-04

Joint ci ratio: 1.244443e-01	ci left: 2.379181e-04	ci right 2.697351e-04	k: 991	n:3910000
Cons ci ratio: 2.998156e-03	ci left: 3.037496e-01	ci right 3.046619e-01	k: 1189444	n:3910000
KS ci ratio: 1.883727e-01	ci left: 1.003121e-04	ci right 1.214119e-04	k: 432	n:3910000
STAC3   3910000 perm   7319 sec   (534 perm/sec)   p_kst 1.104859e-04   p_cons 3.042056e-01   p_joint 2.534527e-04

Joint ci ratio: 1.243191e-01	ci left: 2.378055e-04	ci right 2.695730e-04	k: 993	n:3920000
Cons ci ratio: 2.994346e-03	ci left: 3.037479e-01	ci right 3.046590e-01	k: 1192477	n:3920000
KS ci ratio: 1.881556e-01	ci left: 1.002992e-04	ci right 1.213692e-04	k: 433	n:3920000
STAC3   3920000 perm   7355 sec   (533 perm/sec)   p_kst 1.104592e-04   p_cons 3.042033e-01   p_joint 2.533163e-04

Joint ci ratio: 1.244444e-01	ci left: 2.367073e-04	ci right 2.683624e-04	k: 991	n:3930000
Cons ci ratio: 2.990739e-03	ci left: 3.037195e-01	ci right 3.046294e-01	k: 1195405	n:3930000
KS ci ratio: 1.881556e-01	ci left: 1.000440e-04	ci right 1.210604e-04	k: 433	n:3930000
STAC3   3930000 perm   7391 sec   (532 perm/sec)   p_kst 1.101781e-04   p_cons 3.041743e-01   p_joint 2.521628e-04

Joint ci ratio: 1.242566e-01	ci left: 2.368442e-04	ci right 2.684664e-04	k: 994	n:3940000
Cons ci ratio: 2.987037e-03	ci left: 3.037064e-01	ci right 3.046152e-01	k: 1198393	n:3940000
KS ci ratio: 1.881556e-01	ci left: 9.979010e-05	ci right 1.207532e-04	k: 433	n:3940000
STAC3   3940000 perm   7427 sec   (531 perm/sec)   p_kst 1.098985e-04   p_cons 3.041607e-01   p_joint 2.522843e-04

Joint ci ratio: 1.252682e-01	ci left: 2.323204e-04	ci right 2.636098e-04	k: 978	n:3950000
Cons ci ratio: 2.983269e-03	ci left: 3.037048e-01	ci right 3.046124e-01	k: 1201426	n:3950000
KS ci ratio: 1.875086e-01	ci left: 1.002612e-04	ci right 1.212426e-04	k: 436	n:3950000
STAC3   3950000 perm   7463 sec   (529 perm/sec)   p_kst 1.103797e-04   p_cons 3.041585e-01   p_joint 2.475949e-04

Joint ci ratio: 1.257186e-01	ci left: 2.300215e-04	ci right 2.611210e-04	k: 971	n:3960000
Cons ci ratio: 2.979491e-03	ci left: 3.037068e-01	ci right 3.046132e-01	k: 1204473	n:3960000
KS ci ratio: 1.875087e-01	ci left: 1.000081e-04	ci right 1.209364e-04	k: 436	n:3960000
STAC3   3960000 perm   7498 sec   (528 perm/sec)   p_kst 1.101010e-04   p_cons 3.041598e-01   p_joint 2.452020e-04

Joint ci ratio: 1.256540e-01	ci left: 2.296861e-04	ci right 2.607230e-04	k: 972	n:3970000
Cons ci ratio: 2.975806e-03	ci left: 3.036974e-01	ci right 3.046027e-01	k: 1207475	n:3970000
KS ci ratio: 1.875087e-01	ci left: 9.975615e-05	ci right 1.206318e-04	k: 436	n:3970000
STAC3   3970000 perm   7534 sec   (527 perm/sec)   p_kst 1.098237e-04   p_cons 3.041499e-01   p_joint 2.448363e-04

Joint ci ratio: 1.255895e-01	ci left: 2.293523e-04	ci right 2.603271e-04	k: 973	n:3980000
Cons ci ratio: 2.972071e-03	ci left: 3.036970e-01	ci right 3.046012e-01	k: 1210513	n:3980000
KS ci ratio: 1.872945e-01	ci left: 9.974498e-05	ci right 1.205918e-04	k: 437	n:3980000
STAC3   3980000 perm   7570 sec   (526 perm/sec)   p_kst 1.097990e-04   p_cons 3.041490e-01   p_joint 2.444724e-04

Joint ci ratio: 1.253965e-01	ci left: 2.295058e-04	ci right 2.604501e-04	k: 976	n:3990000
Cons ci ratio: 2.968426e-03	ci left: 3.036860e-01	ci right 3.045890e-01	k: 1213508	n:3990000
KS ci ratio: 1.872945e-01	ci left: 9.949499e-05	ci right 1.202895e-04	k: 437	n:3990000
STAC3   3990000 perm   7606 sec   (525 perm/sec)   p_kst 1.095238e-04   p_cons 3.041373e-01   p_joint 2.446115e-04

Joint ci ratio: 1.252045e-01	ci left: 2.296585e-04	ci right 2.605725e-04	k: 979	n:4000000
Cons ci ratio: 2.964756e-03	ci left: 3.036804e-01	ci right 3.045823e-01	k: 1216525	n:4000000
KS ci ratio: 1.870811e-01	ci left: 9.948454e-05	ci right 1.202505e-04	k: 438	n:4000000
STAC3   4000000 perm   7642 sec   (523 perm/sec)   p_kst 1.095000e-04   p_cons 3.041313e-01   p_joint 2.447500e-04

Joint ci ratio: 1.250132e-01	ci left: 2.298105e-04	ci right 2.606942e-04	k: 982	n:4010000
Cons ci ratio: 2.961002e-03	ci left: 3.036889e-01	ci right 3.045897e-01	k: 1219598	n:4010000
KS ci ratio: 1.866564e-01	ci left: 9.971187e-05	ci right 1.204727e-04	k: 440	n:4010000
STAC3   4010000 perm   7678 sec   (522 perm/sec)   p_kst 1.097257e-04   p_cons 3.041392e-01   p_joint 2.448878e-04

Joint ci ratio: 1.250133e-01	ci left: 2.292389e-04	ci right 2.600457e-04	k: 982	n:4020000
Cons ci ratio: 2.957362e-03	ci left: 3.036829e-01	ci right 3.045826e-01	k: 1222613	n:4020000
KS ci ratio: 1.866564e-01	ci left: 9.946383e-05	ci right 1.201730e-04	k: 440	n:4020000
STAC3   4020000 perm   7715 sec   (521 perm/sec)   p_kst 1.094527e-04   p_cons 3.041326e-01   p_joint 2.442786e-04

Joint ci ratio: 1.249498e-01	ci left: 2.289104e-04	ci right 2.596563e-04	k: 983	n:4030000
Cons ci ratio: 2.953773e-03	ci left: 3.036717e-01	ci right 3.045703e-01	k: 1225607	n:4030000
KS ci ratio: 1.866564e-01	ci left: 9.921702e-05	ci right 1.198748e-04	k: 440	n:4030000
STAC3   4030000 perm   7752 sec   (520 perm/sec)   p_kst 1.091811e-04   p_cons 3.041208e-01   p_joint 2.439206e-04

Joint ci ratio: 1.248863e-01	ci left: 2.285836e-04	ci right 2.592689e-04	k: 984	n:4040000
Cons ci ratio: 2.950117e-03	ci left: 3.036720e-01	ci right 3.045694e-01	k: 1228647	n:4040000
KS ci ratio: 1.864452e-01	ci left: 9.920740e-05	ci right 1.198372e-04	k: 441	n:4040000
STAC3   4040000 perm   7788 sec   (519 perm/sec)   p_kst 1.091584e-04   p_cons 3.041205e-01   p_joint 2.435644e-04

Joint ci ratio: 1.248230e-01	ci left: 2.282584e-04	ci right 2.588833e-04	k: 985	n:4050000
Cons ci ratio: 2.946466e-03	ci left: 3.036735e-01	ci right 3.045698e-01	k: 1231692	n:4050000
KS ci ratio: 1.862346e-01	ci left: 9.919784e-05	ci right 1.197997e-04	k: 442	n:4050000
STAC3   4050000 perm   7825 sec   (518 perm/sec)   p_kst 1.091358e-04   p_cons 3.041215e-01   p_joint 2.432099e-04

Joint ci ratio: 1.248231e-01	ci left: 2.276962e-04	ci right 2.582457e-04	k: 985	n:4060000
Cons ci ratio: 2.942723e-03	ci left: 3.036902e-01	ci right 3.045854e-01	k: 1234799	n:4060000
KS ci ratio: 1.860248e-01	ci left: 9.918834e-05	ci right 1.197624e-04	k: 443	n:4060000
STAC3   4060000 perm   7862 sec   (516 perm/sec)   p_kst 1.091133e-04   p_cons 3.041377e-01   p_joint 2.426108e-04

Joint ci ratio: 1.261743e-01	ci left: 2.221389e-04	ci right 2.522896e-04	k: 964	n:4070000
Cons ci ratio: 2.939056e-03	ci left: 3.036978e-01	ci right 3.045919e-01	k: 1237869	n:4070000
KS ci ratio: 1.858156e-01	ci left: 9.917890e-05	ci right 1.197252e-04	k: 444	n:4070000
STAC3   4070000 perm   7899 sec   (515 perm/sec)   p_kst 1.090909e-04   p_cons 3.041447e-01   p_joint 2.368550e-04

Joint ci ratio: 1.267670e-01	ci left: 2.194584e-04	ci right 2.493957e-04	k: 955	n:4080000
Cons ci ratio: 2.935477e-03	ci left: 3.036948e-01	ci right 3.045878e-01	k: 1240896	n:4080000
KS ci ratio: 1.858157e-01	ci left: 9.893581e-05	ci right 1.194318e-04	k: 444	n:4080000
STAC3   4080000 perm   7937 sec   (514 perm/sec)   p_kst 1.088235e-04   p_cons 3.041412e-01   p_joint 2.340686e-04

Joint ci ratio: 1.279097e-01	ci left: 2.148977e-04	ci right 2.444971e-04	k: 938	n:4090000
Cons ci ratio: 2.931926e-03	ci left: 3.036896e-01	ci right 3.045816e-01	k: 1243914	n:4090000
KS ci ratio: 1.856072e-01	ci left: 9.892704e-05	ci right 1.193956e-04	k: 445	n:4090000
STAC3   4090000 perm   7974 sec   (513 perm/sec)   p_kst 1.088020e-04   p_cons 3.041355e-01   p_joint 2.293399e-04

Joint ci ratio: 1.277737e-01	ci left: 2.148458e-04	ci right 2.444042e-04	k: 940	n:4100000
Cons ci ratio: 2.928302e-03	ci left: 3.036969e-01	ci right 3.045878e-01	k: 1246983	n:4100000
KS ci ratio: 1.853995e-01	ci left: 9.891834e-05	ci right 1.193597e-04	k: 446	n:4100000
STAC3   4100000 perm   8012 sec   (512 perm/sec)   p_kst 1.087805e-04   p_cons 3.041422e-01   p_joint 2.292683e-04

Joint ci ratio: 1.277058e-01	ci left: 2.145585e-04	ci right 2.440606e-04	k: 941	n:4110000
Cons ci ratio: 2.924761e-03	ci left: 3.036939e-01	ci right 3.045837e-01	k: 1250010	n:4110000
KS ci ratio: 1.853995e-01	ci left: 9.867766e-05	ci right 1.190692e-04	k: 446	n:4110000
STAC3   4110000 perm   8049 sec   (511 perm/sec)   p_kst 1.085158e-04   p_cons 3.041387e-01   p_joint 2.289538e-04

Joint ci ratio: 1.274355e-01	ci left: 2.149777e-04	ci right 2.444701e-04	k: 945	n:4120000
Cons ci ratio: 2.921145e-03	ci left: 3.037039e-01	ci right 3.045925e-01	k: 1253090	n:4120000
KS ci ratio: 1.847805e-01	ci left: 9.913257e-05	ci right 1.195421e-04	k: 449	n:4120000
STAC3   4120000 perm   8087 sec   (509 perm/sec)   p_kst 1.089806e-04   p_cons 3.041481e-01   p_joint 2.293689e-04

Joint ci ratio: 1.273011e-01	ci left: 2.149260e-04	ci right 2.443778e-04	k: 947	n:4130000
Cons ci ratio: 2.917650e-03	ci left: 3.036980e-01	ci right 3.045856e-01	k: 1256105	n:4130000
KS ci ratio: 1.847805e-01	ci left: 9.889254e-05	ci right 1.192526e-04	k: 449	n:4130000
STAC3   4130000 perm   8124 sec   (508 perm/sec)   p_kst 1.087167e-04   p_cons 3.041416e-01   p_joint 2.292978e-04

Joint ci ratio: 1.271001e-01	ci left: 2.151084e-04	ci right 2.445352e-04	k: 950	n:4140000
Cons ci ratio: 2.914147e-03	ci left: 3.036953e-01	ci right 3.045818e-01	k: 1259133	n:4140000
KS ci ratio: 1.845755e-01	ci left: 9.888405e-05	ci right 1.192173e-04	k: 450	n:4140000
STAC3   4140000 perm   8163 sec   (507 perm/sec)   p_kst 1.086957e-04   p_cons 3.041384e-01   p_joint 2.294686e-04

Joint ci ratio: 1.269667e-01	ci left: 2.150567e-04	ci right 2.444432e-04	k: 952	n:4150000
Cons ci ratio: 2.910613e-03	ci left: 3.036989e-01	ci right 3.045843e-01	k: 1262187	n:4150000
KS ci ratio: 1.845755e-01	ci left: 9.864577e-05	ci right 1.189300e-04	k: 450	n:4150000
STAC3   4150000 perm   8200 sec   (506 perm/sec)   p_kst 1.084337e-04   p_cons 3.041414e-01   p_joint 2.293976e-04

Joint ci ratio: 1.269667e-01	ci left: 2.145397e-04	ci right 2.438556e-04	k: 952	n:4160000
Cons ci ratio: 2.907182e-03	ci left: 3.036892e-01	ci right 3.045736e-01	k: 1265186	n:4160000
KS ci ratio: 1.845756e-01	ci left: 9.840864e-05	ci right 1.186441e-04	k: 450	n:4160000
STAC3   4160000 perm   8237 sec   (505 perm/sec)   p_kst 1.081731e-04   p_cons 3.041313e-01   p_joint 2.288462e-04

Joint ci ratio: 1.268337e-01	ci left: 2.144896e-04	ci right 2.437657e-04	k: 954	n:4170000
Cons ci ratio: 2.903766e-03	ci left: 3.036793e-01	ci right 3.045627e-01	k: 1268184	n:4170000
KS ci ratio: 1.845756e-01	ci left: 9.817265e-05	ci right 1.183596e-04	k: 450	n:4170000
STAC3   4170000 perm   8275 sec   (504 perm/sec)   p_kst 1.079137e-04   p_cons 3.041209e-01   p_joint 2.287770e-04

Joint ci ratio: 1.266349e-01	ci left: 2.146714e-04	ci right 2.439229e-04	k: 957	n:4180000
Cons ci ratio: 2.900304e-03	ci left: 3.036779e-01	ci right 3.045602e-01	k: 1271217	n:4180000
KS ci ratio: 1.843713e-01	ci left: 9.816597e-05	ci right 1.183267e-04	k: 451	n:4180000
STAC3   4180000 perm   8313 sec   (503 perm/sec)   p_kst 1.078947e-04   p_cons 3.041189e-01   p_joint 2.289474e-04

Joint ci ratio: 1.264371e-01	ci left: 2.148524e-04	ci right 2.440794e-04	k: 960	n:4190000
Cons ci ratio: 2.896864e-03	ci left: 3.036750e-01	ci right 3.045563e-01	k: 1274244	n:4190000
KS ci ratio: 1.841677e-01	ci left: 9.815934e-05	ci right 1.182940e-04	k: 452	n:4190000
STAC3   4190000 perm   8352 sec   (502 perm/sec)   p_kst 1.078759e-04   p_cons 3.041155e-01   p_joint 2.291169e-04

Joint ci ratio: 1.263057e-01	ci left: 2.148020e-04	ci right 2.439895e-04	k: 962	n:4200000
Cons ci ratio: 2.893576e-03	ci left: 3.036517e-01	ci right 3.045319e-01	k: 1277185	n:4200000
KS ci ratio: 1.839648e-01	ci left: 9.815275e-05	ci right 1.182614e-04	k: 453	n:4200000
STAC3   4200000 perm   8390 sec   (501 perm/sec)   p_kst 1.078571e-04   p_cons 3.040917e-01   p_joint 2.290476e-04

Joint ci ratio: 1.261748e-01	ci left: 2.147519e-04	ci right 2.439000e-04	k: 964	n:4210000
Cons ci ratio: 2.890185e-03	ci left: 3.036454e-01	ci right 3.045245e-01	k: 1280197	n:4210000
KS ci ratio: 1.839648e-01	ci left: 9.791961e-05	ci right 1.179805e-04	k: 453	n:4210000
STAC3   4210000 perm   8428 sec   (500 perm/sec)   p_kst 1.076010e-04   p_cons 3.040848e-01   p_joint 2.289786e-04

Joint ci ratio: 1.260442e-01	ci left: 2.147019e-04	ci right 2.438109e-04	k: 966	n:4220000
Cons ci ratio: 2.886761e-03	ci left: 3.036455e-01	ci right 3.045235e-01	k: 1283236	n:4220000
KS ci ratio: 1.835609e-01	ci left: 9.813971e-05	ci right 1.181966e-04	k: 455	n:4220000
STAC3   4220000 perm   8466 sec   (498 perm/sec)   p_kst 1.078199e-04   p_cons 3.040844e-01   p_joint 2.289100e-04

Joint ci ratio: 1.156291e-01	ci left: 2.559226e-04	ci right 2.875577e-04	k: 1148	n:4230000
Cons ci ratio: 2.883202e-03	ci left: 3.036673e-01	ci right 3.045443e-01	k: 1286367	n:4230000
KS ci ratio: 1.833599e-01	ci left: 9.813325e-05	ci right 1.181644e-04	k: 456	n:4230000
STAC3   4230000 perm   8504 sec   (497 perm/sec)   p_kst 1.078014e-04   p_cons 3.041057e-01   p_joint 2.713948e-04

Joint ci ratio: 1.155788e-01	ci left: 2.555480e-04	ci right 2.871221e-04	k: 1149	n:4240000
Cons ci ratio: 2.879737e-03	ci left: 3.036770e-01	ci right 3.045530e-01	k: 1289447	n:4240000
KS ci ratio: 1.833600e-01	ci left: 9.790180e-05	ci right 1.178858e-04	k: 456	n:4240000
STAC3   4240000 perm   8542 sec   (496 perm/sec)   p_kst 1.075472e-04   p_cons 3.041149e-01   p_joint 2.709906e-04

Joint ci ratio: 1.154283e-01	ci left: 2.556322e-04	ci right 2.871728e-04	k: 1152	n:4250000
Cons ci ratio: 2.876306e-03	ci left: 3.036836e-01	ci right 3.045586e-01	k: 1292514	n:4250000
KS ci ratio: 1.833600e-01	ci left: 9.767144e-05	ci right 1.176084e-04	k: 456	n:4250000
STAC3   4250000 perm   8581 sec   (495 perm/sec)   p_kst 1.072941e-04   p_cons 3.041209e-01   p_joint 2.710588e-04

Joint ci ratio: 1.152785e-01	ci left: 2.557161e-04	ci right 2.872232e-04	k: 1155	n:4260000
Cons ci ratio: 2.872955e-03	ci left: 3.036801e-01	ci right 3.045540e-01	k: 1295538	n:4260000
KS ci ratio: 1.827611e-01	ci left: 9.811412e-05	ci right 1.180688e-04	k: 459	n:4260000
STAC3   4260000 perm   8619 sec   (494 perm/sec)   p_kst 1.077465e-04   p_cons 3.041169e-01   p_joint 2.711268e-04

Joint ci ratio: 1.150795e-01	ci left: 2.560270e-04	ci right 2.875143e-04	k: 1159	n:4270000
Cons ci ratio: 2.869536e-03	ci left: 3.036885e-01	ci right 3.045614e-01	k: 1298613	n:4270000
KS ci ratio: 1.821680e-01	ci left: 9.855484e-05	ci right 1.185269e-04	k: 462	n:4270000
STAC3   4270000 perm   8658 sec   (493 perm/sec)   p_kst 1.081967e-04   p_cons 3.041248e-01   p_joint 2.714286e-04

Joint ci ratio: 1.149310e-01	ci left: 2.561096e-04	ci right 2.875636e-04	k: 1162	n:4280000
Cons ci ratio: 2.866164e-03	ci left: 3.036915e-01	ci right 3.045634e-01	k: 1301665	n:4280000
KS ci ratio: 1.817758e-01	ci left: 9.877057e-05	ci right 1.187385e-04	k: 464	n:4280000
STAC3   4280000 perm   8697 sec   (492 perm/sec)   p_kst 1.084112e-04   p_cons 3.041273e-01   p_joint 2.714953e-04

Joint ci ratio: 1.148816e-01	ci left: 2.557390e-04	ci right 2.871331e-04	k: 1163	n:4290000
Cons ci ratio: 2.862838e-03	ci left: 3.036896e-01	ci right 3.045605e-01	k: 1304696	n:4290000
KS ci ratio: 1.817758e-01	ci left: 9.854034e-05	ci right 1.184617e-04	k: 464	n:4290000
STAC3   4290000 perm   8735 sec   (491 perm/sec)   p_kst 1.081585e-04   p_cons 3.041249e-01   p_joint 2.710956e-04

Joint ci ratio: 1.148323e-01	ci left: 2.553701e-04	ci right 2.867046e-04	k: 1164	n:4300000
Cons ci ratio: 2.859347e-03	ci left: 3.037138e-01	ci right 3.045837e-01	k: 1307839	n:4300000
KS ci ratio: 1.815806e-01	ci left: 9.853316e-05	ci right 1.184294e-04	k: 465	n:4300000
STAC3   4300000 perm   8774 sec   (490 perm/sec)   p_kst 1.081395e-04   p_cons 3.041486e-01   p_joint 2.706977e-04

Joint ci ratio: 1.153785e-01	ci left: 2.522989e-04	ci right 2.834138e-04	k: 1153	n:4310000
Cons ci ratio: 2.855909e-03	ci left: 3.037320e-01	ci right 3.046009e-01	k: 1310957	n:4310000
KS ci ratio: 1.815807e-01	ci left: 9.830454e-05	ci right 1.181546e-04	k: 465	n:4310000
STAC3   4310000 perm   8813 sec   (489 perm/sec)   p_kst 1.078886e-04   p_cons 3.041664e-01   p_joint 2.675174e-04

Joint ci ratio: 1.152288e-01	ci left: 2.523892e-04	ci right 2.834722e-04	k: 1156	n:4320000
Cons ci ratio: 2.852652e-03	ci left: 3.037250e-01	ci right 3.045929e-01	k: 1313966	n:4320000
KS ci ratio: 1.813861e-01	ci left: 9.829795e-05	ci right 1.181231e-04	k: 466	n:4320000
STAC3   4320000 perm   8853 sec   (488 perm/sec)   p_kst 1.078704e-04   p_cons 3.041588e-01   p_joint 2.675926e-04

Joint ci ratio: 1.151294e-01	ci left: 2.522549e-04	ci right 2.832927e-04	k: 1158	n:4330000
Cons ci ratio: 2.849356e-03	ci left: 3.037256e-01	ci right 3.045925e-01	k: 1317008	n:4330000
KS ci ratio: 1.809990e-01	ci left: 9.851188e-05	ci right 1.183331e-04	k: 468	n:4330000
STAC3   4330000 perm   8892 sec   (487 perm/sec)   p_kst 1.080831e-04   p_cons 3.041589e-01   p_joint 2.674365e-04

Joint ci ratio: 1.162382e-01	ci left: 2.467512e-04	ci right 2.774243e-04	k: 1136	n:4340000
Cons ci ratio: 2.845993e-03	ci left: 3.037377e-01	ci right 3.046036e-01	k: 1320100	n:4340000
KS ci ratio: 1.809990e-01	ci left: 9.828489e-05	ci right 1.180604e-04	k: 468	n:4340000
STAC3   4340000 perm   8932 sec   (486 perm/sec)   p_kst 1.078341e-04   p_cons 3.041705e-01   p_joint 2.617512e-04

Joint ci ratio: 1.158820e-01	ci left: 2.477465e-04	ci right 2.784424e-04	k: 1143	n:4350000
Cons ci ratio: 2.842778e-03	ci left: 3.037295e-01	ci right 3.045944e-01	k: 1323104	n:4350000
KS ci ratio: 1.808063e-01	ci left: 9.827843e-05	ci right 1.180293e-04	k: 469	n:4350000
STAC3   4350000 perm   8971 sec   (485 perm/sec)   p_kst 1.078161e-04   p_cons 3.041618e-01   p_joint 2.627586e-04

Joint ci ratio: 1.156799e-01	ci left: 2.480691e-04	ci right 2.787478e-04	k: 1147	n:4360000
Cons ci ratio: 2.839517e-03	ci left: 3.037299e-01	ci right 3.045938e-01	k: 1326145	n:4360000
KS ci ratio: 1.806143e-01	ci left: 9.827200e-05	ci right 1.179983e-04	k: 470	n:4360000
STAC3   4360000 perm   9010 sec   (484 perm/sec)   p_kst 1.077982e-04   p_cons 3.041617e-01   p_joint 2.630734e-04

Joint ci ratio: 1.154789e-01	ci left: 2.483903e-04	ci right 2.790517e-04	k: 1151	n:4370000
Cons ci ratio: 2.836207e-03	ci left: 3.037392e-01	ci right 3.046021e-01	k: 1329225	n:4370000
KS ci ratio: 1.802320e-01	ci left: 9.848412e-05	ci right 1.182066e-04	k: 472	n:4370000
STAC3   4370000 perm   9049 sec   (483 perm/sec)   p_kst 1.080092e-04   p_cons 3.041705e-01   p_joint 2.633867e-04

Joint ci ratio: 1.152789e-01	ci left: 2.487101e-04	ci right 2.793542e-04	k: 1155	n:4380000
Cons ci ratio: 2.833056e-03	ci left: 3.037265e-01	ci right 3.045884e-01	k: 1332209	n:4380000
KS ci ratio: 1.800418e-01	ci left: 9.847729e-05	ci right 1.181753e-04	k: 473	n:4380000
STAC3   4380000 perm   9089 sec   (482 perm/sec)   p_kst 1.079909e-04   p_cons 3.041573e-01   p_joint 2.636986e-04

Joint ci ratio: 1.151793e-01	ci left: 2.485860e-04	ci right 2.791865e-04	k: 1157	n:4390000
Cons ci ratio: 2.829813e-03	ci left: 3.037291e-01	ci right 3.045900e-01	k: 1335260	n:4390000
KS ci ratio: 1.800418e-01	ci left: 9.825296e-05	ci right 1.179061e-04	k: 473	n:4390000
STAC3   4390000 perm   9128 sec   (481 perm/sec)   p_kst 1.077449e-04   p_cons 3.041595e-01   p_joint 2.635535e-04

Joint ci ratio: 1.149809e-01	ci left: 2.489040e-04	ci right 2.794873e-04	k: 1161	n:4400000
Cons ci ratio: 2.826676e-03	ci left: 3.037177e-01	ci right 3.045776e-01	k: 1338249	n:4400000
KS ci ratio: 1.796632e-01	ci left: 9.846375e-05	ci right 1.181131e-04	k: 475	n:4400000
STAC3   4400000 perm   9168 sec   (480 perm/sec)   p_kst 1.079545e-04   p_cons 3.041475e-01   p_joint 2.638636e-04

Joint ci ratio: 1.148821e-01	ci left: 2.487800e-04	ci right 2.793200e-04	k: 1163	n:4410000
Cons ci ratio: 2.823441e-03	ci left: 3.037223e-01	ci right 3.045813e-01	k: 1341309	n:4410000
KS ci ratio: 1.794747e-01	ci left: 9.845704e-05	ci right 1.180823e-04	k: 476	n:4410000
STAC3   4410000 perm   9208 sec   (479 perm/sec)   p_kst 1.079365e-04   p_cons 3.041517e-01   p_joint 2.637188e-04

Joint ci ratio: 1.147343e-01	ci left: 2.488764e-04	ci right 2.793863e-04	k: 1166	n:4420000
Cons ci ratio: 2.820228e-03	ci left: 3.037254e-01	ci right 3.045834e-01	k: 1344362	n:4420000
KS ci ratio: 1.792869e-01	ci left: 9.845037e-05	ci right 1.180515e-04	k: 477	n:4420000
STAC3   4420000 perm   9247 sec   (478 perm/sec)   p_kst 1.079186e-04   p_cons 3.041543e-01   p_joint 2.638009e-04

Joint ci ratio: 1.148821e-01	ci left: 2.476569e-04	ci right 2.780590e-04	k: 1163	n:4430000
Cons ci ratio: 2.816943e-03	ci left: 3.037409e-01	ci right 3.045979e-01	k: 1347470	n:4430000
KS ci ratio: 1.790997e-01	ci left: 9.844374e-05	ci right 1.180209e-04	k: 478	n:4430000
STAC3   4430000 perm   9287 sec   (477 perm/sec)   p_kst 1.079007e-04   p_cons 3.041693e-01   p_joint 2.625282e-04

Joint ci ratio: 1.148328e-01	ci left: 2.473178e-04	ci right 2.776645e-04	k: 1164	n:4440000
Cons ci ratio: 2.813731e-03	ci left: 3.037471e-01	ci right 3.046032e-01	k: 1350537	n:4440000
KS ci ratio: 1.789130e-01	ci left: 9.843716e-05	ci right 1.179904e-04	k: 479	n:4440000
STAC3   4440000 perm   9329 sec   (476 perm/sec)   p_kst 1.078829e-04   p_cons 3.041750e-01   p_joint 2.621622e-04

Joint ci ratio: 1.146853e-01	ci left: 2.474169e-04	ci right 2.777340e-04	k: 1167	n:4450000
Cons ci ratio: 2.810576e-03	ci left: 3.037463e-01	ci right 3.046014e-01	k: 1353573	n:4450000
KS ci ratio: 1.785414e-01	ci left: 9.864528e-05	ci right 1.181947e-04	k: 481	n:4450000
STAC3   4450000 perm   9369 sec   (475 perm/sec)   p_kst 1.080899e-04   p_cons 3.041737e-01   p_joint 2.622472e-04

Joint ci ratio: 1.145872e-01	ci left: 2.472977e-04	ci right 2.775726e-04	k: 1169	n:4460000
Cons ci ratio: 2.807370e-03	ci left: 3.037549e-01	ci right 3.046090e-01	k: 1356651	n:4460000
KS ci ratio: 1.785414e-01	ci left: 9.842410e-05	ci right 1.179297e-04	k: 481	n:4460000
STAC3   4460000 perm   9410 sec   (474 perm/sec)   p_kst 1.078475e-04   p_cons 3.041818e-01   p_joint 2.621076e-04

Joint ci ratio: 1.144406e-01	ci left: 2.473964e-04	ci right 2.776419e-04	k: 1172	n:4470000
Cons ci ratio: 2.804127e-03	ci left: 3.037706e-01	ci right 3.046238e-01	k: 1359761	n:4470000
KS ci ratio: 1.785415e-01	ci left: 9.820391e-05	ci right 1.176659e-04	k: 481	n:4470000
STAC3   4470000 perm   9450 sec   (473 perm/sec)   p_kst 1.076063e-04   p_cons 3.041971e-01   p_joint 2.621924e-04

Joint ci ratio: 1.143918e-01	ci left: 2.470610e-04	ci right 2.772518e-04	k: 1173	n:4480000
Cons ci ratio: 2.800991e-03	ci left: 3.037718e-01	ci right 3.046240e-01	k: 1362806	n:4480000
KS ci ratio: 1.783565e-01	ci left: 9.819795e-05	ci right 1.176364e-04	k: 482	n:4480000
STAC3   4480000 perm   9491 sec   (472 perm/sec)   p_kst 1.075893e-04   p_cons 3.041978e-01   p_joint 2.618304e-04

Joint ci ratio: 1.142945e-01	ci left: 2.469434e-04	ci right 2.770925e-04	k: 1175	n:4490000
Cons ci ratio: 2.797772e-03	ci left: 3.037872e-01	ci right 3.046385e-01	k: 1365915	n:4490000
KS ci ratio: 1.781722e-01	ci left: 9.819203e-05	ci right 1.176071e-04	k: 483	n:4490000
STAC3   4490000 perm   9531 sec   (471 perm/sec)   p_kst 1.075724e-04   p_cons 3.042127e-01   p_joint 2.616927e-04

Joint ci ratio: 1.141975e-01	ci left: 2.468264e-04	ci right 2.769339e-04	k: 1177	n:4500000
Cons ci ratio: 2.794616e-03	ci left: 3.037945e-01	ci right 3.046449e-01	k: 1368988	n:4500000
KS ci ratio: 1.779884e-01	ci left: 9.818614e-05	ci right 1.175778e-04	k: 484	n:4500000
STAC3   4500000 perm   9571 sec   (470 perm/sec)   p_kst 1.075556e-04   p_cons 3.042196e-01   p_joint 2.615556e-04

Joint ci ratio: 1.138596e-01	ci left: 2.477870e-04	ci right 2.779162e-04	k: 1184	n:4510000
Cons ci ratio: 2.791540e-03	ci left: 3.037914e-01	ci right 3.046408e-01	k: 1372014	n:4510000
KS ci ratio: 1.776225e-01	ci left: 9.839216e-05	ci right 1.177803e-04	k: 486	n:4510000
STAC3   4510000 perm   9612 sec   (469 perm/sec)   p_kst 1.077605e-04   p_cons 3.042160e-01   p_joint 2.625277e-04

Joint ci ratio: 1.136679e-01	ci left: 2.480985e-04	ci right 2.782114e-04	k: 1188	n:4520000
Cons ci ratio: 2.788389e-03	ci left: 3.038011e-01	ci right 3.046496e-01	k: 1375098	n:4520000
KS ci ratio: 1.774405e-01	ci left: 9.838588e-05	ci right 1.177508e-04	k: 487	n:4520000
STAC3   4520000 perm   9653 sec   (468 perm/sec)   p_kst 1.077434e-04   p_cons 3.042252e-01   p_joint 2.628319e-04

Joint ci ratio: 1.135725e-01	ci left: 2.479798e-04	ci right 2.780513e-04	k: 1190	n:4530000
Cons ci ratio: 2.785340e-03	ci left: 3.037969e-01	ci right 3.046444e-01	k: 1378119	n:4530000
KS ci ratio: 1.774405e-01	ci left: 9.816870e-05	ci right 1.174909e-04	k: 487	n:4530000
STAC3   4530000 perm   9694 sec   (467 perm/sec)   p_kst 1.075055e-04   p_cons 3.042205e-01   p_joint 2.626932e-04

Joint ci ratio: 1.153293e-01	ci left: 2.397310e-04	ci right 2.692825e-04	k: 1154	n:4540000
Cons ci ratio: 2.782276e-03	ci left: 3.037966e-01	ci right 3.046433e-01	k: 1381158	n:4540000
KS ci ratio: 1.774405e-01	ci left: 9.795246e-05	ci right 1.172321e-04	k: 487	n:4540000
STAC3   4540000 perm   9735 sec   (466 perm/sec)   p_kst 1.072687e-04   p_cons 3.042198e-01   p_joint 2.541850e-04

Joint ci ratio: 1.152795e-01	ci left: 2.394176e-04	ci right 2.689168e-04	k: 1155	n:4550000
Cons ci ratio: 2.779073e-03	ci left: 3.038190e-01	ci right 3.046647e-01	k: 1384300	n:4550000
KS ci ratio: 1.774405e-01	ci left: 9.773718e-05	ci right 1.169744e-04	k: 487	n:4550000
STAC3   4550000 perm   9776 sec   (465 perm/sec)   p_kst 1.070330e-04   p_cons 3.042418e-01   p_joint 2.538462e-04

Joint ci ratio: 1.151302e-01	ci left: 2.395315e-04	ci right 2.690039e-04	k: 1158	n:4560000
Cons ci ratio: 2.776088e-03	ci left: 3.038098e-01	ci right 3.046545e-01	k: 1387298	n:4560000
KS ci ratio: 1.772590e-01	ci left: 9.773241e-05	ci right 1.169469e-04	k: 488	n:4560000
STAC3   4560000 perm   9818 sec   (464 perm/sec)   p_kst 1.070175e-04   p_cons 3.042320e-01   p_joint 2.539474e-04

Joint ci ratio: 1.149814e-01	ci left: 2.396449e-04	ci right 2.690907e-04	k: 1161	n:4570000
Cons ci ratio: 2.773104e-03	ci left: 3.038018e-01	ci right 3.046457e-01	k: 1390302	n:4570000
KS ci ratio: 1.770780e-01	ci left: 9.772767e-05	ci right 1.169195e-04	k: 489	n:4570000
STAC3   4570000 perm   9859 sec   (464 perm/sec)   p_kst 1.070022e-04   p_cons 3.042236e-01   p_joint 2.540481e-04

Joint ci ratio: 1.149815e-01	ci left: 2.391216e-04	ci right 2.685031e-04	k: 1161	n:4580000
Cons ci ratio: 2.770071e-03	ci left: 3.038029e-01	ci right 3.046458e-01	k: 1393347	n:4580000
KS ci ratio: 1.770781e-01	ci left: 9.751429e-05	ci right 1.166642e-04	k: 489	n:4580000
STAC3   4580000 perm   9900 sec   (463 perm/sec)   p_kst 1.067686e-04   p_cons 3.042242e-01   p_joint 2.534934e-04

Joint ci ratio: 1.148827e-01	ci left: 2.390239e-04	ci right 2.683664e-04	k: 1163	n:4590000
Cons ci ratio: 2.767008e-03	ci left: 3.038101e-01	ci right 3.046521e-01	k: 1396420	n:4590000
KS ci ratio: 1.767178e-01	ci left: 9.771828e-05	ci right 1.168651e-04	k: 491	n:4590000
STAC3   4590000 perm   9942 sec   (462 perm/sec)   p_kst 1.069717e-04   p_cons 3.042309e-01   p_joint 2.533769e-04

Joint ci ratio: 1.147841e-01	ci left: 2.389266e-04	ci right 2.682303e-04	k: 1165	n:4600000
Cons ci ratio: 2.764125e-03	ci left: 3.037911e-01	ci right 3.046322e-01	k: 1399373	n:4600000
KS ci ratio: 1.765384e-01	ci left: 9.771363e-05	ci right 1.168380e-04	k: 492	n:4600000
STAC3   4600000 perm   9983 sec   (461 perm/sec)   p_kst 1.069565e-04   p_cons 3.042115e-01   p_joint 2.532609e-04

Joint ci ratio: 1.147841e-01	ci left: 2.384083e-04	ci right 2.676484e-04	k: 1165	n:4610000
Cons ci ratio: 2.761199e-03	ci left: 3.037803e-01	ci right 3.046204e-01	k: 1402363	n:4610000
KS ci ratio: 1.765385e-01	ci left: 9.750167e-05	ci right 1.165846e-04	k: 492	n:4610000
STAC3   4610000 perm   10025 sec   (460 perm/sec)   p_kst 1.067245e-04   p_cons 3.042002e-01   p_joint 2.527115e-04

Joint ci ratio: 1.147842e-01	ci left: 2.378922e-04	ci right 2.670691e-04	k: 1165	n:4620000
Cons ci ratio: 2.758274e-03	ci left: 3.037708e-01	ci right 3.046100e-01	k: 1405359	n:4620000
KS ci ratio: 1.765385e-01	ci left: 9.729062e-05	ci right 1.163322e-04	k: 492	n:4620000
STAC3   4620000 perm   10066 sec   (459 perm/sec)   p_kst 1.064935e-04   p_cons 3.041903e-01   p_joint 2.521645e-04

Joint ci ratio: 1.146858e-01	ci left: 2.377980e-04	ci right 2.669366e-04	k: 1167	n:4630000
Cons ci ratio: 2.755340e-03	ci left: 3.037641e-01	ci right 3.046024e-01	k: 1408368	n:4630000
KS ci ratio: 1.765385e-01	ci left: 9.708049e-05	ci right 1.160810e-04	k: 492	n:4630000
STAC3   4630000 perm   10108 sec   (458 perm/sec)   p_kst 1.062635e-04   p_cons 3.041832e-01   p_joint 2.520518e-04

Joint ci ratio: 1.146368e-01	ci left: 2.374948e-04	ci right 2.665830e-04	k: 1168	n:4640000
Cons ci ratio: 2.752452e-03	ci left: 3.037519e-01	ci right 3.045893e-01	k: 1411351	n:4640000
KS ci ratio: 1.763597e-01	ci left: 9.707727e-05	ci right 1.160558e-04	k: 493	n:4640000
STAC3   4640000 perm   10150 sec   (457 perm/sec)   p_kst 1.062500e-04   p_cons 3.041705e-01   p_joint 2.517241e-04

Joint ci ratio: 1.146368e-01	ci left: 2.369841e-04	ci right 2.660097e-04	k: 1168	n:4650000
Cons ci ratio: 2.749503e-03	ci left: 3.037505e-01	ci right 3.045870e-01	k: 1414384	n:4650000
KS ci ratio: 1.763598e-01	ci left: 9.686850e-05	ci right 1.158062e-04	k: 493	n:4650000
STAC3   4650000 perm   10193 sec   (456 perm/sec)   p_kst 1.060215e-04   p_cons 3.041686e-01   p_joint 2.511828e-04

Joint ci ratio: 1.145878e-01	ci left: 2.366840e-04	ci right 2.656597e-04	k: 1169	n:4660000
Cons ci ratio: 2.746551e-03	ci left: 3.037510e-01	ci right 3.045866e-01	k: 1417426	n:4660000
KS ci ratio: 1.761815e-01	ci left: 9.686575e-05	ci right 1.157818e-04	k: 494	n:4660000
STAC3   4660000 perm   10236 sec   (455 perm/sec)   p_kst 1.060086e-04   p_cons 3.041687e-01   p_joint 2.508584e-04

Joint ci ratio: 1.144900e-01	ci left: 2.365932e-04	ci right 2.655313e-04	k: 1171	n:4670000
Cons ci ratio: 2.743603e-03	ci left: 3.037524e-01	ci right 3.045871e-01	k: 1420472	n:4670000
KS ci ratio: 1.761815e-01	ci left: 9.665833e-05	ci right 1.155339e-04	k: 494	n:4670000
STAC3   4670000 perm   10277 sec   (454 perm/sec)   p_kst 1.057816e-04   p_cons 3.041696e-01   p_joint 2.507495e-04

Joint ci ratio: 1.142951e-01	ci left: 2.369179e-04	ci right 2.658431e-04	k: 1175	n:4680000
Cons ci ratio: 2.740620e-03	ci left: 3.037606e-01	ci right 3.045944e-01	k: 1423550	n:4680000
KS ci ratio: 1.760038e-01	ci left: 9.665605e-05	ci right 1.155101e-04	k: 495	n:4680000
STAC3   4680000 perm   10320 sec   (454 perm/sec)   p_kst 1.057692e-04   p_cons 3.041774e-01   p_joint 2.510684e-04

Joint ci ratio: 1.142952e-01	ci left: 2.364127e-04	ci right 2.652763e-04	k: 1175	n:4690000
Cons ci ratio: 2.737642e-03	ci left: 3.037694e-01	ci right 3.046023e-01	k: 1426631	n:4690000
KS ci ratio: 1.758267e-01	ci left: 9.665379e-05	ci right 1.154864e-04	k: 496	n:4690000
STAC3   4690000 perm   10362 sec   (453 perm/sec)   p_kst 1.057569e-04   p_cons 3.041857e-01   p_joint 2.505330e-04

Joint ci ratio: 1.141497e-01	ci left: 2.365298e-04	ci right 2.653684e-04	k: 1178	n:4700000
Cons ci ratio: 2.734712e-03	ci left: 3.037724e-01	ci right 3.046045e-01	k: 1429685	n:4700000
KS ci ratio: 1.758267e-01	ci left: 9.644814e-05	ci right 1.152407e-04	k: 496	n:4700000
STAC3   4700000 perm   10404 sec   (452 perm/sec)   p_kst 1.055319e-04   p_cons 3.041883e-01   p_joint 2.506383e-04

Joint ci ratio: 1.139084e-01	ci left: 2.370589e-04	ci right 2.658968e-04	k: 1183	n:4710000
Cons ci ratio: 2.731742e-03	ci left: 3.037828e-01	ci right 3.046140e-01	k: 1432774	n:4710000
KS ci ratio: 1.754740e-01	ci left: 9.664933e-05	ci right 1.154393e-04	k: 498	n:4710000
STAC3   4710000 perm   10446 sec   (451 perm/sec)   p_kst 1.057325e-04   p_cons 3.041983e-01   p_joint 2.511677e-04

Joint ci ratio: 1.137643e-01	ci left: 2.371741e-04	ci right 2.659871e-04	k: 1186	n:4720000
Cons ci ratio: 2.728851e-03	ci left: 3.037826e-01	ci right 3.046129e-01	k: 1435813	n:4720000
KS ci ratio: 1.752984e-01	ci left: 9.664713e-05	ci right 1.154159e-04	k: 499	n:4720000
STAC3   4720000 perm   10489 sec   (450 perm/sec)   p_kst 1.057203e-04   p_cons 3.041977e-01   p_joint 2.512712e-04

Joint ci ratio: 1.135254e-01	ci left: 2.376998e-04	ci right 2.665119e-04	k: 1191	n:4730000
Cons ci ratio: 2.725987e-03	ci left: 3.037797e-01	ci right 3.046091e-01	k: 1438839	n:4730000
KS ci ratio: 1.752984e-01	ci left: 9.644280e-05	ci right 1.151718e-04	k: 499	n:4730000
STAC3   4730000 perm   10531 sec   (449 perm/sec)   p_kst 1.054968e-04   p_cons 3.041943e-01   p_joint 2.517970e-04

Joint ci ratio: 1.134779e-01	ci left: 2.374033e-04	ci right 2.661666e-04	k: 1192	n:4740000
Cons ci ratio: 2.723138e-03	ci left: 3.037757e-01	ci right 3.046043e-01	k: 1441860	n:4740000
KS ci ratio: 1.751234e-01	ci left: 9.644105e-05	ci right 1.151491e-04	k: 500	n:4740000
STAC3   4740000 perm   10574 sec   (448 perm/sec)   p_kst 1.054852e-04   p_cons 3.041899e-01   p_joint 2.514768e-04

Joint ci ratio: 1.133354e-01	ci left: 2.375171e-04	ci right 2.662557e-04	k: 1195	n:4750000
Cons ci ratio: 2.720284e-03	ci left: 3.037741e-01	ci right 3.046017e-01	k: 1444892	n:4750000
KS ci ratio: 1.751234e-01	ci left: 9.623802e-05	ci right 1.149067e-04	k: 500	n:4750000
STAC3   4750000 perm   10617 sec   (447 perm/sec)   p_kst 1.052632e-04   p_cons 3.041878e-01   p_joint 2.515789e-04

Joint ci ratio: 1.132408e-01	ci left: 2.374264e-04	ci right 2.661284e-04	k: 1197	n:4760000
Cons ci ratio: 2.717397e-03	ci left: 3.037787e-01	ci right 3.046055e-01	k: 1447954	n:4760000
KS ci ratio: 1.749489e-01	ci left: 9.623672e-05	ci right 1.148845e-04	k: 501	n:4760000
STAC3   4760000 perm   10660 sec   (447 perm/sec)   p_kst 1.052521e-04   p_cons 3.041920e-01   p_joint 2.514706e-04

Joint ci ratio: 1.131936e-01	ci left: 2.371324e-04	ci right 2.657861e-04	k: 1198	n:4770000
Cons ci ratio: 2.714603e-03	ci left: 3.037706e-01	ci right 3.045965e-01	k: 1450955	n:4770000
KS ci ratio: 1.747749e-01	ci left: 9.623543e-05	ci right 1.148625e-04	k: 502	n:4770000
STAC3   4770000 perm   10702 sec   (446 perm/sec)   p_kst 1.052411e-04   p_cons 3.041834e-01   p_joint 2.511530e-04

Joint ci ratio: 1.130522e-01	ci left: 2.372461e-04	ci right 2.658754e-04	k: 1201	n:4780000
Cons ci ratio: 2.711819e-03	ci left: 3.037621e-01	ci right 3.045871e-01	k: 1453954	n:4780000
KS ci ratio: 1.747749e-01	ci left: 9.603410e-05	ci right 1.146222e-04	k: 502	n:4780000
STAC3   4780000 perm   10746 sec   (445 perm/sec)   p_kst 1.050209e-04   p_cons 3.041745e-01   p_joint 2.512552e-04

Joint ci ratio: 1.129114e-01	ci left: 2.373594e-04	ci right 2.659644e-04	k: 1204	n:4790000
Cons ci ratio: 2.708973e-03	ci left: 3.037646e-01	ci right 3.045888e-01	k: 1457006	n:4790000
KS ci ratio: 1.747750e-01	ci left: 9.583361e-05	ci right 1.143829e-04	k: 502	n:4790000
STAC3   4790000 perm   10789 sec   (444 perm/sec)   p_kst 1.048017e-04   p_cons 3.041766e-01   p_joint 2.513570e-04

Joint ci ratio: 1.129114e-01	ci left: 2.368649e-04	ci right 2.654103e-04	k: 1204	n:4800000
Cons ci ratio: 2.706208e-03	ci left: 3.037560e-01	ci right 3.045793e-01	k: 1460004	n:4800000
KS ci ratio: 1.747750e-01	ci left: 9.563396e-05	ci right 1.141446e-04	k: 502	n:4800000
STAC3   4800000 perm   10832 sec   (443 perm/sec)   p_kst 1.045833e-04   p_cons 3.041675e-01   p_joint 2.508333e-04

Joint ci ratio: 1.127712e-01	ci left: 2.369786e-04	ci right 2.654998e-04	k: 1207	n:4810000
Cons ci ratio: 2.703409e-03	ci left: 3.037540e-01	ci right 3.045764e-01	k: 1463034	n:4810000
KS ci ratio: 1.746015e-01	ci left: 9.563395e-05	ci right 1.141243e-04	k: 503	n:4810000
STAC3   4810000 perm   10875 sec   (442 perm/sec)   p_kst 1.045738e-04   p_cons 3.041651e-01   p_joint 2.509356e-04

Joint ci ratio: 1.125849e-01	ci left: 2.372934e-04	ci right 2.658022e-04	k: 1211	n:4820000
Cons ci ratio: 2.700481e-03	ci left: 3.037735e-01	ci right 3.045952e-01	k: 1466168	n:4820000
KS ci ratio: 1.744286e-01	ci left: 9.563394e-05	ci right 1.141040e-04	k: 504	n:4820000
STAC3   4820000 perm   10918 sec   (441 perm/sec)   p_kst 1.045643e-04   p_cons 3.041842e-01   p_joint 2.512448e-04

Joint ci ratio: 1.001681e-01	ci left: 3.010970e-04	ci right 3.330474e-04	k: 1530	n:4830000
Cons ci ratio: 2.697645e-03	ci left: 3.037800e-01	ci right 3.046008e-01	k: 1469239	n:4830000
KS ci ratio: 1.737418e-01	ci left: 9.622802e-05	ci right 1.147320e-04	k: 508	n:4830000
STAC3   4830000 perm   10962 sec   (441 perm/sec)   p_kst 1.051760e-04   p_cons 3.041903e-01   p_joint 3.167702e-04

Joint ci ratio: 1.001028e-01	ci left: 3.008777e-04	ci right 3.327829e-04	k: 1532	n:4840000
Cons ci ratio: 2.694952e-03	ci left: 3.037656e-01	ci right 3.045855e-01	k: 1472209	n:4840000
KS ci ratio: 1.737418e-01	ci left: 9.602920e-05	ci right 1.144950e-04	k: 508	n:4840000
STAC3   4840000 perm   11006 sec   (440 perm/sec)   p_kst 1.049587e-04   p_cons 3.041754e-01   p_joint 3.165289e-04

Joint ci ratio: 1.001028e-01	ci left: 3.002574e-04	ci right 3.320967e-04	k: 1532	n:4850000
Cons ci ratio: 2.692274e-03	ci left: 3.037500e-01	ci right 3.045690e-01	k: 1475173	n:4850000
KS ci ratio: 1.737418e-01	ci left: 9.583120e-05	ci right 1.142589e-04	k: 508	n:4850000
STAC3   4850000 perm   11050 sec   (439 perm/sec)   p_kst 1.047423e-04   p_cons 3.041594e-01   p_joint 3.158763e-04

Joint ci ratio: 9.993995e-02	ci left: 3.006426e-04	ci right 3.324679e-04	k: 1537	n:4860000
Cons ci ratio: 2.689509e-03	ci left: 3.037494e-01	ci right 3.045677e-01	k: 1478210	n:4860000
KS ci ratio: 1.737418e-01	ci left: 9.563402e-05	ci right 1.140238e-04	k: 508	n:4860000
STAC3   4860000 perm   11095 sec   (438 perm/sec)   p_kst 1.045267e-04   p_cons 3.041584e-01   p_joint 3.162551e-04

Joint ci ratio: 1.000702e-01	ci left: 2.992245e-04	ci right 3.309434e-04	k: 1533	n:4870000
Cons ci ratio: 2.686747e-03	ci left: 3.037497e-01	ci right 3.045671e-01	k: 1481251	n:4870000
KS ci ratio: 1.734015e-01	ci left: 9.583048e-05	ci right 1.142181e-04	k: 510	n:4870000
STAC3   4870000 perm   11138 sec   (437 perm/sec)   p_kst 1.047228e-04   p_cons 3.041583e-01   p_joint 3.147844e-04

Joint ci ratio: 1.000377e-01	ci left: 2.988111e-04	ci right 3.304753e-04	k: 1534	n:4880000
Cons ci ratio: 2.683974e-03	ci left: 3.037531e-01	ci right 3.045697e-01	k: 1484307	n:4880000
KS ci ratio: 1.734015e-01	ci left: 9.563411e-05	ci right 1.139841e-04	k: 510	n:4880000
STAC3   4880000 perm   11182 sec   (436 perm/sec)   p_kst 1.045082e-04   p_cons 3.041613e-01   p_joint 3.143443e-04

Joint ci ratio: 1.000051e-01	ci left: 2.983994e-04	ci right 3.300091e-04	k: 1535	n:4890000
Cons ci ratio: 2.681175e-03	ci left: 3.037620e-01	ci right 3.045777e-01	k: 1487390	n:4890000
KS ci ratio: 1.734015e-01	ci left: 9.543853e-05	ci right 1.137510e-04	k: 510	n:4890000
STAC3   4890000 perm   11225 sec   (436 perm/sec)   p_kst 1.042945e-04   p_cons 3.041697e-01   p_joint 3.139059e-04

Joint ci ratio: 9.994008e-02	ci left: 2.981884e-04	ci right 3.297539e-04	k: 1537	n:4900000
Cons ci ratio: 2.678328e-03	ci left: 3.037796e-01	ci right 3.045945e-01	k: 1490516	n:4900000
KS ci ratio: 1.734015e-01	ci left: 9.524376e-05	ci right 1.135189e-04	k: 510	n:4900000
STAC3   4900000 perm   11269 sec   (435 perm/sec)   p_kst 1.040816e-04   p_cons 3.041869e-01   p_joint 3.136735e-04

Joint ci ratio: 9.990763e-02	ci left: 2.977796e-04	ci right 3.292911e-04	k: 1538	n:4910000
Cons ci ratio: 2.675574e-03	ci left: 3.037841e-01	ci right 3.045982e-01	k: 1493578	n:4910000
KS ci ratio: 1.734015e-01	ci left: 9.504978e-05	ci right 1.132877e-04	k: 510	n:4910000
STAC3   4910000 perm   11314 sec   (434 perm/sec)   p_kst 1.038697e-04   p_cons 3.041910e-01   p_joint 3.132383e-04

Joint ci ratio: 9.981039e-02	ci left: 2.977689e-04	ci right 3.292468e-04	k: 1541	n:4920000
Cons ci ratio: 2.672870e-03	ci left: 3.037819e-01	ci right 3.045952e-01	k: 1496607	n:4920000
KS ci ratio: 1.732321e-01	ci left: 9.505103e-05	ci right 1.132695e-04	k: 511	n:4920000
STAC3   4920000 perm   11358 sec   (433 perm/sec)   p_kst 1.038618e-04   p_cons 3.041884e-01   p_joint 3.132114e-04

Joint ci ratio: 9.968118e-02	ci left: 2.979561e-04	ci right 3.294105e-04	k: 1545	n:4930000
Cons ci ratio: 2.670096e-03	ci left: 3.037921e-01	ci right 3.046045e-01	k: 1499697	n:4930000
KS ci ratio: 1.730632e-01	ci left: 9.505227e-05	ci right 1.132513e-04	k: 512	n:4930000
STAC3   4930000 perm   11402 sec   (432 perm/sec)   p_kst 1.038540e-04   p_cons 3.041982e-01   p_joint 3.133874e-04

Joint ci ratio: 9.964898e-02	ci left: 2.975503e-04	ci right 3.289512e-04	k: 1546	n:4940000
Cons ci ratio: 2.667484e-03	ci left: 3.037779e-01	ci right 3.045895e-01	k: 1502667	n:4940000
KS ci ratio: 1.730632e-01	ci left: 9.485986e-05	ci right 1.130221e-04	k: 512	n:4940000
STAC3   4940000 perm   11447 sec   (432 perm/sec)   p_kst 1.036437e-04   p_cons 3.041836e-01   p_joint 3.129555e-04

Joint ci ratio: 8.440478e-02	ci left: 4.171685e-04	ci right 4.541270e-04	k: 2155	n:4950000
Cons ci ratio: 2.664735e-03	ci left: 3.037868e-01	ci right 3.045976e-01	k: 1505751	n:4950000
KS ci ratio: 1.727268e-01	ci left: 9.505478e-05	ci right 1.132152e-04	k: 514	n:4950000
STAC3   4950000 perm   11491 sec   (431 perm/sec)   p_kst 1.038384e-04   p_cons 3.041921e-01   p_joint 4.353535e-04

Joint ci ratio: 8.432659e-02	ci left: 4.171169e-04	ci right 4.540349e-04	k: 2159	n:4960000
Cons ci ratio: 2.662148e-03	ci left: 3.037711e-01	ci right 3.045811e-01	k: 1508713	n:4960000
KS ci ratio: 1.725594e-01	ci left: 9.505604e-05	ci right 1.131973e-04	k: 515	n:4960000
STAC3   4960000 perm   11536 sec   (430 perm/sec)   p_kst 1.038306e-04   p_cons 3.041760e-01   p_joint 4.352823e-04

Joint ci ratio: 8.428760e-02	ci left: 4.166715e-04	ci right 4.535323e-04	k: 2161	n:4970000
Cons ci ratio: 2.659530e-03	ci left: 3.037617e-01	ci right 3.045709e-01	k: 1511706	n:4970000
KS ci ratio: 1.725594e-01	ci left: 9.486478e-05	ci right 1.129695e-04	k: 515	n:4970000
STAC3   4970000 perm   11580 sec   (429 perm/sec)   p_kst 1.036217e-04   p_cons 3.041662e-01   p_joint 4.348089e-04

Joint ci ratio: 8.422920e-02	ci left: 4.164245e-04	ci right 4.532367e-04	k: 2164	n:4980000
Cons ci ratio: 2.656775e-03	ci left: 3.037755e-01	ci right 3.045838e-01	k: 1514814	n:4980000
KS ci ratio: 1.723924e-01	ci left: 9.486642e-05	ci right 1.129522e-04	k: 516	n:4980000
STAC3   4980000 perm   11626 sec   (428 perm/sec)   p_kst 1.036145e-04   p_cons 3.041795e-01   p_joint 4.345382e-04

Joint ci ratio: 8.417091e-02	ci left: 4.161786e-04	ci right 4.529422e-04	k: 2167	n:4990000
Cons ci ratio: 2.654211e-03	ci left: 3.037601e-01	ci right 3.045676e-01	k: 1517777	n:4990000
KS ci ratio: 1.723925e-01	ci left: 9.467631e-05	ci right 1.127258e-04	k: 516	n:4990000
STAC3   4990000 perm   11671 sec   (428 perm/sec)   p_kst 1.034068e-04   p_cons 3.041637e-01   p_joint 4.342685e-04

Joint ci ratio: 8.411274e-02	ci left: 4.159336e-04	ci right 4.526490e-04	k: 2170	n:5000000
Cons ci ratio: 2.651402e-03	ci left: 3.037850e-01	ci right 3.045917e-01	k: 1520941	n:5000000
KS ci ratio: 1.722260e-01	ci left: 9.467833e-05	ci right 1.127090e-04	k: 517	n:5000000
STAC3   5000000 perm   11716 sec   (427 perm/sec)   p_kst 1.034000e-04   p_cons 3.041882e-01   p_joint 4.340000e-04

Outputting figure to mutsig2_images.part000000000167/STAC3.6_1139_5000000_0.0001034_0.30419_0.000434.png
                gene_name: STAC3
               theta_stop: 0.17 
                    nperm: 5000000 
                     p_ks: 0.00010 
        ci_ks_bounds_left: 9.47e-05 
       ci_ks_bounds_right: 0.00011 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.00043 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00045 

Current progress: 29 percent done.
STAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
Cons ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
STAM   10000 perm   2 sec   (5666 perm/sec)   p_kst 2.163000e-01   p_cons 7.910000e-02   p_joint 2.047000e-01

Joint ci ratio: 5.925136e-02	ci left: 1.742032e-01	ci right 1.848902e-01	k: 3590	n:20000
Cons ci ratio: 9.418845e-02	ci left: 7.593396e-02	ci right 8.348877e-02	k: 1593	n:20000
KS ci ratio: 5.249784e-02	ci left: 2.122446e-01	ci right 2.237375e-01	k: 4359	n:20000
STAM   20000 perm   4 sec   (4961 perm/sec)   p_kst 2.179500e-01   p_cons 7.965000e-02   p_joint 1.795000e-01

Outputting figure to mutsig2_images.part000000000167/STAM.6_1679_20000_0.21795_0.07965_0.1795.png
                gene_name: STAM
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 31 percent done.
SRPX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
SRPX2   10000 perm   2 sec   (5739 perm/sec)   p_kst 6.162000e-01   p_cons 4.618000e-01   p_joint 8.737000e-01

Outputting figure to mutsig2_images.part000000000167/SRPX2.5_1438_10000_0.6162_0.4618_0.8737.png
                gene_name: SRPX2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 33 percent done.
SSTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
Cons ci ratio: 1.661754e-02	ci left: 8.405065e-01	ci right 8.546904e-01	k: 8477	n:10000
KS ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
SSTR4   10000 perm   2 sec   (5709 perm/sec)   p_kst 3.761000e-01   p_cons 8.477000e-01   p_joint 7.218000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR4.5_1171_10000_0.3761_0.8477_0.7218.png
                gene_name: SSTR4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 35 percent done.
SSX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
Cons ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
SSX7   10000 perm   2 sec   (6014 perm/sec)   p_kst 1.186000e-01   p_cons 6.476000e-01   p_joint 1.961000e-01

Joint ci ratio: 5.468557e-02	ci left: 1.987800e-01	ci right 2.100061e-01	k: 4087	n:20000
Cons ci ratio: 2.134165e-02	ci left: 6.210575e-01	ci right 6.345054e-01	k: 12556	n:20000
KS ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
SSX7   20000 perm   4 sec   (5339 perm/sec)   p_kst 1.167000e-01   p_cons 6.278000e-01   p_joint 2.043500e-01

Outputting figure to mutsig2_images.part000000000167/SSX7.5_591_20000_0.1167_0.6278_0.20435.png
                gene_name: SSX7
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 37 percent done.
ST7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
Cons ci ratio: 1.376352e-02	ci left: 8.840108e-01	ci right 8.963609e-01	k: 8903	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
ST7   10000 perm   2 sec   (5719 perm/sec)   p_kst 3.329000e-01   p_cons 8.903000e-01   p_joint 6.290000e-01

Outputting figure to mutsig2_images.part000000000167/ST7.4_1922_10000_0.3329_0.8903_0.629.png
                gene_name: ST7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 38 percent done.
SSH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
Cons ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
SSH1   10000 perm   2 sec   (4946 perm/sec)   p_kst 6.280000e-01   p_cons 6.779000e-01   p_joint 8.355000e-01

Outputting figure to mutsig2_images.part000000000167/SSH1.4_3543_10000_0.628_0.6779_0.8355.png
                gene_name: SSH1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 40 percent done.
SSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
SSH2   10000 perm   2 sec   (4494 perm/sec)   p_kst 4.998000e-01   p_cons 1.292000e-01   p_joint 3.756000e-01

Joint ci ratio: 3.838807e-02	ci left: 3.360708e-01	ci right 3.492749e-01	k: 6853	n:20000
Cons ci ratio: 7.061667e-02	ci left: 1.287656e-01	ci right 1.382412e-01	k: 2669	n:20000
KS ci ratio: 2.763625e-02	ci left: 4.944957e-01	ci right 5.084039e-01	k: 10029	n:20000
SSH2   20000 perm   5 sec   (4042 perm/sec)   p_kst 5.014500e-01   p_cons 1.334500e-01   p_joint 3.426500e-01

Outputting figure to mutsig2_images.part000000000167/SSH2.4_4332_20000_0.50145_0.13345_0.34265.png
                gene_name: SSH2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 42 percent done.
SSPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
KS ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
SSPN   10000 perm   2 sec   (6154 perm/sec)   p_kst 1.580000e-01   p_cons 3.702000e-01   p_joint 3.013000e-01

Outputting figure to mutsig2_images.part000000000167/SSPN.4_744_10000_0.158_0.3702_0.3013.png
                gene_name: SSPN
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 44 percent done.
SSX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
KS ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
SSX3   10000 perm   1 sec   (6867 perm/sec)   p_kst 1.573000e-01   p_cons 8.594000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000167/SSX3.4_642_10000_0.1573_0.8594_0.3927.png
                gene_name: SSX3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 46 percent done.
ST8SIA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.058822e-02	ci left: 7.755997e-01	ci right 7.918347e-01	k: 7838	n:10000
KS ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
ST8SIA5   10000 perm   2 sec   (6066 perm/sec)   p_kst 6.774000e-01   p_cons 7.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST8SIA5.4_1159_10000_0.6774_0.7838_1.png
                gene_name: ST8SIA5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
STAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
Cons ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
KS ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
STAM2   10000 perm   2 sec   (5646 perm/sec)   p_kst 3.385000e-01   p_cons 7.008000e-01   p_joint 5.041000e-01

Outputting figure to mutsig2_images.part000000000167/STAM2.4_1634_10000_0.3385_0.7008_0.5041.png
                gene_name: STAM2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 50 percent done.
SRPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
Cons ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
SRPX   10000 perm   2 sec   (6316 perm/sec)   p_kst 4.341000e-01   p_cons 1.187000e-01   p_joint 2.134000e-01

Joint ci ratio: 4.727834e-02	ci left: 2.497144e-01	ci right 2.618567e-01	k: 5115	n:20000
Cons ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
KS ci ratio: 3.135385e-02	ci left: 4.317572e-01	ci right 4.455607e-01	k: 8773	n:20000
SRPX   20000 perm   4 sec   (5539 perm/sec)   p_kst 4.386500e-01   p_cons 1.252000e-01   p_joint 2.557500e-01

Outputting figure to mutsig2_images.part000000000167/SRPX.3_1435_20000_0.43865_0.1252_0.25575.png
                gene_name: SRPX
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 52 percent done.
SS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.542018e-02	ci left: 4.170783e-01	ci right 4.365644e-01	k: 4268	n:10000
Cons ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
KS ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
SS18   10000 perm   2 sec   (6484 perm/sec)   p_kst 2.135000e-01   p_cons 7.600000e-01   p_joint 4.268000e-01

Outputting figure to mutsig2_images.part000000000167/SS18.3_1301_10000_0.2135_0.76_0.4268.png
                gene_name: SS18
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
SSTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
Cons ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
KS ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
SSTR1   10000 perm   1 sec   (6891 perm/sec)   p_kst 4.942000e-01   p_cons 6.222000e-01   p_joint 8.712000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR1.3_1180_10000_0.4942_0.6222_0.8712.png
                gene_name: SSTR1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 56 percent done.
ST14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
ST14   10000 perm   2 sec   (5471 perm/sec)   p_kst 5.289000e-01   p_cons 1.172000e-01   p_joint 2.944000e-01

Joint ci ratio: 3.165163e-02	ci left: 4.271161e-01	ci right 4.409031e-01	k: 8680	n:20000
Cons ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
KS ci ratio: 2.640875e-02	ci left: 5.172005e-01	ci right 5.310925e-01	k: 10483	n:20000
ST14   20000 perm   4 sec   (4824 perm/sec)   p_kst 5.241500e-01   p_cons 1.198500e-01   p_joint 4.340000e-01

Outputting figure to mutsig2_images.part000000000167/ST14.3_2644_20000_0.52415_0.11985_0.434.png
                gene_name: ST14
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 58 percent done.
ST3GAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
Cons ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
ST3GAL1   10000 perm   2 sec   (6556 perm/sec)   p_kst 7.030000e-01   p_cons 4.643000e-01   p_joint 6.154000e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL1.3_1047_10000_0.703_0.4643_0.6154.png
                gene_name: ST3GAL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 60 percent done.
ST3GAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.305088e-02	ci left: 4.434080e-01	ci right 4.630192e-01	k: 4532	n:10000
KS ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
ST3GAL2   10000 perm   2 sec   (6516 perm/sec)   p_kst 9.323000e-01   p_cons 4.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST3GAL2.3_1077_10000_0.9323_0.4532_1.png
                gene_name: ST3GAL2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ST3GAL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
Cons ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
KS ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
ST3GAL6   10000 perm   2 sec   (6340 perm/sec)   p_kst 1.753000e-01   p_cons 7.309000e-01   p_joint 3.098000e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL6.3_1032_10000_0.1753_0.7309_0.3098.png
                gene_name: ST3GAL6
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 63 percent done.
ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
Cons ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
KS ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
ST5   10000 perm   2 sec   (5242 perm/sec)   p_kst 2.915000e-01   p_cons 9.025000e-01   p_joint 5.308000e-01

Outputting figure to mutsig2_images.part000000000167/ST5.3_3490_10000_0.2915_0.9025_0.5308.png
                gene_name: ST5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 65 percent done.
ST6GALNAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 4.720332e-03	ci left: 9.832843e-01	ci right 9.880266e-01	k: 9858	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
ST6GALNAC1   10000 perm   2 sec   (5813 perm/sec)   p_kst 2.393000e-01   p_cons 9.858000e-01   p_joint 3.571000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC1.3_1839_10000_0.2393_0.9858_0.3571.png
                gene_name: ST6GALNAC1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
ST6GALNAC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
Cons ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
KS ci ratio: 2.873093e-02	ci left: 6.410619e-01	ci right 6.598504e-01	k: 6505	n:10000
ST6GALNAC5   10000 perm   2 sec   (6503 perm/sec)   p_kst 6.505000e-01   p_cons 3.900000e-03   p_joint 6.120000e-02

Joint ci ratio: 8.914826e-02	ci left: 8.420687e-02	ci right 9.211334e-02	k: 1762	n:20000
Cons ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
KS ci ratio: 2.044417e-02	ci left: 6.409834e-01	ci right 6.542736e-01	k: 12953	n:20000
ST6GALNAC5   20000 perm   4 sec   (5437 perm/sec)   p_kst 6.476500e-01   p_cons 1.350000e-03   p_joint 8.810000e-02

Joint ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
Cons ci ratio: 6.044355e-01	ci left: 9.809166e-04	ci right 1.853586e-03	k: 41	n:30000
KS ci ratio: 1.653284e-02	ci left: 6.466121e-01	ci right 6.574251e-01	k: 19561	n:30000
ST6GALNAC5   30000 perm   6 sec   (5230 perm/sec)   p_kst 6.520333e-01   p_cons 1.366667e-03   p_joint 4.186667e-02

Joint ci ratio: 7.430567e-02	ci left: 6.262780e-02	ci right 6.748558e-02	k: 2601	n:40000
Cons ci ratio: 3.045377e-01	ci left: 3.497522e-03	ci right 4.776119e-03	k: 164	n:40000
KS ci ratio: 1.437426e-02	ci left: 6.455533e-01	ci right 6.549249e-01	k: 26010	n:40000
ST6GALNAC5   40000 perm   8 sec   (5077 perm/sec)   p_kst 6.502500e-01   p_cons 4.100000e-03   p_joint 6.502500e-02

Joint ci ratio: 6.628151e-02	ci left: 6.320887e-02	ci right 6.756176e-02	k: 3268	n:50000
Cons ci ratio: 2.686527e-01	ci left: 3.670745e-03	ci right 4.827978e-03	k: 211	n:50000
KS ci ratio: 1.284012e-02	ci left: 6.466429e-01	ci right 6.550196e-01	k: 32542	n:50000
ST6GALNAC5   50000 perm   10 sec   (4950 perm/sec)   p_kst 6.508400e-01   p_cons 4.220000e-03   p_joint 6.536000e-02

Joint ci ratio: 5.863182e-02	ci left: 6.729688e-02	ci right 7.137823e-02	k: 4159	n:60000
Cons ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
KS ci ratio: 1.171513e-02	ci left: 6.472540e-01	ci right 6.548980e-01	k: 39065	n:60000
ST6GALNAC5   60000 perm   12 sec   (4834 perm/sec)   p_kst 6.510833e-01   p_cons 4.300000e-03   p_joint 6.931667e-02

Joint ci ratio: 5.407535e-02	ci left: 6.793720e-02	ci right 7.172712e-02	k: 4887	n:70000
Cons ci ratio: 2.254571e-01	ci left: 3.815291e-03	ci right 4.797926e-03	k: 300	n:70000
KS ci ratio: 1.084538e-02	ci left: 6.475702e-01	ci right 6.546459e-01	k: 45578	n:70000
ST6GALNAC5   70000 perm   15 sec   (4732 perm/sec)   p_kst 6.511143e-01   p_cons 4.285714e-03   p_joint 6.981429e-02

Joint ci ratio: 5.029929e-02	ci left: 6.878489e-02	ci right 7.234633e-02	k: 5644	n:80000
Cons ci ratio: 2.130845e-01	ci left: 3.763670e-03	ci right 4.672863e-03	k: 336	n:80000
KS ci ratio: 1.014889e-02	ci left: 6.476227e-01	ci right 6.542413e-01	k: 52075	n:80000
ST6GALNAC5   80000 perm   17 sec   (4633 perm/sec)   p_kst 6.509375e-01   p_cons 4.200000e-03   p_joint 7.055000e-02

Joint ci ratio: 4.968051e-02	ci left: 6.309037e-02	ci right 6.631554e-02	k: 5822	n:90000
Cons ci ratio: 2.017347e-01	ci left: 3.756322e-03	ci right 4.609456e-03	k: 375	n:90000
KS ci ratio: 9.557570e-03	ci left: 6.483320e-01	ci right 6.545693e-01	k: 58631	n:90000
ST6GALNAC5   90000 perm   20 sec   (4537 perm/sec)   p_kst 6.514556e-01   p_cons 4.166667e-03   p_joint 6.468889e-02

Joint ci ratio: 4.696060e-02	ci left: 6.360825e-02	ci right 6.667703e-02	k: 6513	n:100000
Cons ci ratio: 1.886314e-01	ci left: 3.894352e-03	ci right 4.714809e-03	k: 429	n:100000
KS ci ratio: 9.060239e-03	ci left: 6.488379e-01	ci right 6.547533e-01	k: 65180	n:100000
ST6GALNAC5   100000 perm   22 sec   (4449 perm/sec)   p_kst 6.518000e-01   p_cons 4.290000e-03   p_joint 6.513000e-02

Joint ci ratio: 4.467324e-02	ci left: 6.395491e-02	ci right 6.688623e-02	k: 7195	n:110000
Cons ci ratio: 1.779733e-01	ci left: 4.000064e-03	ci right 4.790054e-03	k: 482	n:110000
KS ci ratio: 8.632551e-03	ci left: 6.492950e-01	ci right 6.549334e-01	k: 71733	n:110000
ST6GALNAC5   110000 perm   25 sec   (4361 perm/sec)   p_kst 6.521182e-01   p_cons 4.381818e-03   p_joint 6.540909e-02

Joint ci ratio: 2.581792e-02	ci left: 1.590655e-01	ci right 1.632342e-01	k: 19337	n:120000
Cons ci ratio: 1.715298e-01	ci left: 3.961568e-03	ci right 4.712696e-03	k: 519	n:120000
KS ci ratio: 8.273574e-03	ci left: 6.489465e-01	ci right 6.543462e-01	k: 78198	n:120000
ST6GALNAC5   120000 perm   28 sec   (4276 perm/sec)   p_kst 6.516500e-01   p_cons 4.325000e-03   p_joint 1.611417e-01

Joint ci ratio: 2.400538e-02	ci left: 1.681606e-01	ci right 1.722541e-01	k: 22126	n:130000
Cons ci ratio: 1.631127e-01	ci left: 4.062218e-03	ci right 4.790929e-03	k: 574	n:130000
KS ci ratio: 7.948929e-03	ci left: 6.490567e-01	ci right 6.542442e-01	k: 84715	n:130000
ST6GALNAC5   130000 perm   31 sec   (4200 perm/sec)   p_kst 6.516538e-01   p_cons 4.415385e-03   p_joint 1.702000e-01

Joint ci ratio: 2.318029e-02	ci left: 1.676517e-01	ci right 1.715906e-01	k: 23746	n:140000
Cons ci ratio: 1.572088e-01	ci left: 4.073753e-03	ci right 4.775588e-03	k: 618	n:140000
KS ci ratio: 7.662018e-03	ci left: 6.490188e-01	ci right 6.540178e-01	k: 91213	n:140000
ST6GALNAC5   140000 perm   34 sec   (4121 perm/sec)   p_kst 6.515214e-01   p_cons 4.414286e-03   p_joint 1.696143e-01

Joint ci ratio: 2.255311e-02	ci left: 1.657461e-01	ci right 1.695334e-01	k: 25145	n:150000
Cons ci ratio: 1.516732e-01	ci left: 4.096990e-03	ci right 4.775718e-03	k: 664	n:150000
KS ci ratio: 7.401369e-03	ci left: 6.491559e-01	ci right 6.539850e-01	k: 97736	n:150000
ST6GALNAC5   150000 perm   37 sec   (4048 perm/sec)   p_kst 6.515733e-01   p_cons 4.426667e-03   p_joint 1.676333e-01

Joint ci ratio: 3.698052e-02	ci left: 6.440402e-02	ci right 6.683675e-02	k: 10498	n:160000
Cons ci ratio: 1.462713e-01	ci left: 4.141789e-03	ci right 4.801365e-03	k: 714	n:160000
KS ci ratio: 7.169873e-03	ci left: 6.490091e-01	ci right 6.536854e-01	k: 104216	n:160000
ST6GALNAC5   160000 perm   40 sec   (3970 perm/sec)   p_kst 6.513500e-01   p_cons 4.462500e-03   p_joint 6.561250e-02

Joint ci ratio: 3.578580e-02	ci left: 6.474840e-02	ci right 6.711349e-02	k: 11207	n:170000
Cons ci ratio: 1.418747e-01	ci left: 4.153321e-03	ci right 4.793171e-03	k: 759	n:170000
KS ci ratio: 6.955035e-03	ci left: 6.491293e-01	ci right 6.536656e-01	k: 110738	n:170000
ST6GALNAC5   170000 perm   44 sec   (3896 perm/sec)   p_kst 6.514000e-01   p_cons 4.464706e-03   p_joint 6.592353e-02

Joint ci ratio: 3.476547e-02	ci left: 6.482417e-02	ci right 6.712317e-02	k: 11874	n:180000
Cons ci ratio: 1.370845e-01	ci left: 4.212122e-03	ci right 4.837334e-03	k: 813	n:180000
KS ci ratio: 6.757014e-03	ci left: 6.493325e-01	ci right 6.537404e-01	k: 117277	n:180000
ST6GALNAC5   180000 perm   47 sec   (3830 perm/sec)   p_kst 6.515389e-01   p_cons 4.516667e-03   p_joint 6.596667e-02

Joint ci ratio: 3.596285e-02	ci left: 5.779328e-02	ci right 5.991494e-02	k: 11181	n:190000
Cons ci ratio: 1.330572e-01	ci left: 4.244703e-03	ci right 4.854776e-03	k: 863	n:190000
KS ci ratio: 6.575072e-03	ci left: 6.495106e-01	ci right 6.538005e-01	k: 123815	n:190000
ST6GALNAC5   190000 perm   50 sec   (3764 perm/sec)   p_kst 6.516579e-01   p_cons 4.542105e-03   p_joint 5.884737e-02

Joint ci ratio: 2.078553e-02	ci left: 1.494135e-01	ci right 1.525567e-01	k: 30196	n:200000
Cons ci ratio: 1.293651e-01	ci left: 4.274266e-03	ci right 4.870233e-03	k: 913	n:200000
KS ci ratio: 6.410606e-03	ci left: 6.494220e-01	ci right 6.536036e-01	k: 130303	n:200000
ST6GALNAC5   200000 perm   54 sec   (3702 perm/sec)   p_kst 6.515150e-01   p_cons 4.565000e-03   p_joint 1.509800e-01

Joint ci ratio: 1.869964e-02	ci left: 1.714271e-01	ci right 1.746677e-01	k: 36339	n:210000
Cons ci ratio: 1.268263e-01	ci left: 4.241270e-03	ci right 4.820157e-03	k: 950	n:210000
KS ci ratio: 6.257762e-03	ci left: 6.493527e-01	ci right 6.534336e-01	k: 136793	n:210000
ST6GALNAC5   210000 perm   58 sec   (3642 perm/sec)   p_kst 6.513952e-01   p_cons 4.523810e-03   p_joint 1.730429e-01

Joint ci ratio: 1.861408e-02	ci left: 1.662044e-01	ci right 1.693317e-01	k: 36908	n:220000
Cons ci ratio: 1.241161e-01	ci left: 4.233401e-03	ci right 4.797958e-03	k: 992	n:220000
KS ci ratio: 6.116332e-03	ci left: 6.492179e-01	ci right 6.532054e-01	k: 143267	n:220000
ST6GALNAC5   220000 perm   61 sec   (3584 perm/sec)   p_kst 6.512136e-01   p_cons 4.509091e-03   p_joint 1.677636e-01

Joint ci ratio: 1.784345e-02	ci left: 1.718937e-01	ci right 1.749928e-01	k: 39891	n:230000
Cons ci ratio: 1.208128e-01	ci left: 4.281151e-03	ci right 4.835796e-03	k: 1047	n:230000
KS ci ratio: 5.982358e-03	ci left: 6.492264e-01	ci right 6.531263e-01	k: 149771	n:230000
ST6GALNAC5   230000 perm   65 sec   (3529 perm/sec)   p_kst 6.511783e-01   p_cons 4.552174e-03   p_joint 1.734391e-01

Joint ci ratio: 1.714074e-02	ci left: 1.773934e-01	ci right 1.804644e-01	k: 42942	n:240000
Cons ci ratio: 1.179749e-01	ci left: 4.308928e-03	ci right 4.853143e-03	k: 1098	n:240000
KS ci ratio: 5.853811e-03	ci left: 6.494688e-01	ci right 6.532859e-01	k: 156331	n:240000
ST6GALNAC5   240000 perm   69 sec   (3476 perm/sec)   p_kst 6.513792e-01   p_cons 4.575000e-03   p_joint 1.789250e-01

Joint ci ratio: 1.680022e-02	ci left: 1.773236e-01	ci right 1.803319e-01	k: 44706	n:250000
Cons ci ratio: 1.154290e-01	ci left: 4.326851e-03	ci right 4.860734e-03	k: 1147	n:250000
KS ci ratio: 5.738056e-03	ci left: 6.493080e-01	ci right 6.530485e-01	k: 162795	n:250000
ST6GALNAC5   250000 perm   73 sec   (3426 perm/sec)   p_kst 6.511800e-01   p_cons 4.588000e-03   p_joint 1.788240e-01

Joint ci ratio: 1.647338e-02	ci left: 1.773633e-01	ci right 1.803131e-01	k: 46497	n:260000
Cons ci ratio: 1.131360e-01	ci left: 4.336037e-03	ci right 4.859716e-03	k: 1194	n:260000
KS ci ratio: 5.626475e-03	ci left: 6.493568e-01	ci right 6.530245e-01	k: 169310	n:260000
ST6GALNAC5   260000 perm   77 sec   (3374 perm/sec)   p_kst 6.511923e-01   p_cons 4.592308e-03   p_joint 1.788346e-01

Joint ci ratio: 2.828785e-02	ci left: 6.545999e-02	ci right 6.734193e-02	k: 17927	n:270000
Cons ci ratio: 1.113353e-01	ci left: 4.315830e-03	ci right 4.828227e-03	k: 1233	n:270000
KS ci ratio: 5.519135e-03	ci left: 6.495694e-01	ci right 6.531681e-01	k: 175870	n:270000
ST6GALNAC5   270000 perm   81 sec   (3326 perm/sec)   p_kst 6.513704e-01   p_cons 4.566667e-03   p_joint 6.639630e-02

Joint ci ratio: 2.779734e-02	ci left: 6.539178e-02	ci right 6.723864e-02	k: 18567	n:280000
Cons ci ratio: 1.095315e-01	ci left: 4.304076e-03	ci right 4.806264e-03	k: 1274	n:280000
KS ci ratio: 5.416986e-03	ci left: 6.498283e-01	ci right 6.533615e-01	k: 182447	n:280000
ST6GALNAC5   280000 perm   85 sec   (3279 perm/sec)   p_kst 6.515964e-01   p_cons 4.550000e-03   p_joint 6.631071e-02

Joint ci ratio: 2.731322e-02	ci left: 6.541077e-02	ci right 6.722549e-02	k: 19231	n:290000
Cons ci ratio: 1.068784e-01	ci left: 4.370384e-03	ci right 4.867181e-03	k: 1338	n:290000
KS ci ratio: 5.320829e-03	ci left: 6.500249e-01	ci right 6.534962e-01	k: 189011	n:290000
ST6GALNAC5   290000 perm   90 sec   (3236 perm/sec)   p_kst 6.517621e-01   p_cons 4.613793e-03   p_joint 6.631379e-02

Joint ci ratio: 2.687525e-02	ci left: 6.532939e-02	ci right 6.711233e-02	k: 19865	n:300000
Cons ci ratio: 1.052797e-01	ci left: 4.357744e-03	ci right 4.845235e-03	k: 1379	n:300000
KS ci ratio: 5.231690e-03	ci left: 6.500287e-01	ci right 6.534417e-01	k: 195521	n:300000
ST6GALNAC5   300000 perm   94 sec   (3193 perm/sec)   p_kst 6.517367e-01   p_cons 4.596667e-03   p_joint 6.621667e-02

Joint ci ratio: 2.642389e-02	ci left: 6.541057e-02	ci right 6.716529e-02	k: 20548	n:310000
Cons ci ratio: 1.030967e-01	ci left: 4.402540e-03	ci right 4.884212e-03	k: 1438	n:310000
KS ci ratio: 5.145277e-03	ci left: 6.501749e-01	ci right 6.535320e-01	k: 202075	n:310000
ST6GALNAC5   310000 perm   98 sec   (3149 perm/sec)   p_kst 6.518548e-01   p_cons 4.638710e-03   p_joint 6.628387e-02

Joint ci ratio: 2.602474e-02	ci left: 6.534403e-02	ci right 6.707009e-02	k: 21185	n:320000
Cons ci ratio: 1.014874e-01	ci left: 4.405033e-03	ci right 4.879006e-03	k: 1484	n:320000
KS ci ratio: 5.064194e-03	ci left: 6.502059e-01	ci right 6.535101e-01	k: 208595	n:320000
ST6GALNAC5   320000 perm   103 sec   (3109 perm/sec)   p_kst 6.518594e-01   p_cons 4.637500e-03   p_joint 6.620313e-02

Joint ci ratio: 1.489772e-02	ci left: 1.721278e-01	ci right 1.747143e-01	k: 57228	n:330000
Cons ci ratio: 1.001486e-01	ci left: 4.389701e-03	ci right 4.855427e-03	k: 1524	n:330000
KS ci ratio: 4.986794e-03	ci left: 6.502385e-01	ci right 6.534922e-01	k: 215116	n:330000
ST6GALNAC5   330000 perm   108 sec   (3069 perm/sec)   p_kst 6.518667e-01   p_cons 4.618182e-03   p_joint 1.734182e-01

Joint ci ratio: 2.526101e-02	ci left: 6.530510e-02	ci right 6.697877e-02	k: 22487	n:340000
Cons ci ratio: 9.895666e-02	ci left: 4.366704e-03	ci right 4.824156e-03	k: 1561	n:340000
KS ci ratio: 4.912233e-03	ci left: 6.503255e-01	ci right 6.535308e-01	k: 221656	n:340000
ST6GALNAC5   340000 perm   112 sec   (3027 perm/sec)   p_kst 6.519294e-01   p_cons 4.591176e-03   p_joint 6.613824e-02

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC5.3_1031_340000_0.65193_0.0045912_0.066138.png
                gene_name: ST6GALNAC5
               theta_stop: 0.099 
                    nperm: 340000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0046 
      ci_cons_bounds_left: 0.0044 
     ci_cons_bounds_right: 0.0048 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.067 

Current progress: 69 percent done.
ST8SIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
ST8SIA2   10000 perm   2 sec   (6308 perm/sec)   p_kst 2.136000e-01   p_cons 8.580000e-02   p_joint 2.981000e-01

Joint ci ratio: 3.377232e-02	ci left: 3.956432e-01	ci right 4.092851e-01	k: 8049	n:20000
Cons ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
KS ci ratio: 5.247475e-02	ci left: 2.123931e-01	ci right 2.238889e-01	k: 4362	n:20000
ST8SIA2   20000 perm   4 sec   (5595 perm/sec)   p_kst 2.181000e-01   p_cons 8.550000e-02   p_joint 4.024500e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA2.3_1152_20000_0.2181_0.0855_0.40245.png
                gene_name: ST8SIA2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 71 percent done.
ST8SIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
ST8SIA3   10000 perm   2 sec   (6179 perm/sec)   p_kst 4.664000e-01   p_cons 7.089000e-01   p_joint 5.119000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA3.3_1159_10000_0.4664_0.7089_0.5119.png
                gene_name: ST8SIA3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 73 percent done.
STAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
Cons ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
KS ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
STAG1   10000 perm   2 sec   (4836 perm/sec)   p_kst 7.559000e-01   p_cons 1.990000e-02   p_joint 5.510000e-02

Joint ci ratio: 5.658836e-02	ci left: 1.879955e-01	ci right 1.989938e-01	k: 3869	n:20000
Cons ci ratio: 1.885661e-01	ci left: 1.915306e-02	ci right 2.318783e-02	k: 422	n:20000
KS ci ratio: 1.573864e-02	ci left: 7.501873e-01	ci right 7.621381e-01	k: 15124	n:20000
STAG1   20000 perm   5 sec   (4274 perm/sec)   p_kst 7.562000e-01   p_cons 2.110000e-02   p_joint 1.934500e-01

Joint ci ratio: 4.292742e-02	ci left: 2.128095e-01	ci right 2.221786e-01	k: 6524	n:30000
Cons ci ratio: 1.521975e-01	ci left: 1.998476e-02	ci right 2.330878e-02	k: 648	n:30000
KS ci ratio: 1.292723e-02	ci left: 7.490854e-01	ci right 7.588654e-01	k: 22620	n:30000
STAG1   30000 perm   7 sec   (4077 perm/sec)   p_kst 7.540000e-01   p_cons 2.160000e-02   p_joint 2.174667e-01

Joint ci ratio: 3.976284e-02	ci left: 1.915736e-01	ci right 1.993706e-01	k: 7818	n:40000
Cons ci ratio: 1.316003e-01	ci left: 2.027025e-02	ci right 2.314977e-02	k: 867	n:40000
KS ci ratio: 1.124285e-02	ci left: 7.481646e-01	ci right 7.566487e-01	k: 30097	n:40000
STAG1   40000 perm   10 sec   (3965 perm/sec)   p_kst 7.524250e-01   p_cons 2.167500e-02   p_joint 1.954500e-01

Joint ci ratio: 3.503510e-02	ci left: 1.967199e-01	ci right 2.037549e-01	k: 10011	n:50000
Cons ci ratio: 1.162908e-01	ci left: 2.092638e-02	ci right 2.352950e-02	k: 1110	n:50000
KS ci ratio: 9.996671e-03	ci left: 7.508235e-01	ci right 7.583869e-01	k: 37731	n:50000
STAG1   50000 perm   13 sec   (3863 perm/sec)   p_kst 7.546200e-01   p_cons 2.220000e-02   p_joint 2.002200e-01

Joint ci ratio: 3.208677e-02	ci left: 1.959939e-01	ci right 2.024019e-01	k: 11951	n:60000
Cons ci ratio: 1.062484e-01	ci left: 2.100346e-02	ci right 2.337640e-02	k: 1330	n:60000
KS ci ratio: 9.138898e-03	ci left: 7.506171e-01	ci right 7.575250e-01	k: 45245	n:60000
STAG1   60000 perm   16 sec   (3792 perm/sec)   p_kst 7.540833e-01   p_cons 2.216667e-02   p_joint 1.991833e-01

Joint ci ratio: 2.958873e-02	ci left: 1.974967e-01	ci right 2.034424e-01	k: 14032	n:70000
Cons ci ratio: 9.878527e-02	ci left: 2.091214e-02	ci right 2.309916e-02	k: 1539	n:70000
KS ci ratio: 8.455383e-03	ci left: 7.511219e-01	ci right 7.575141e-01	k: 52803	n:70000
STAG1   70000 perm   19 sec   (3731 perm/sec)   p_kst 7.543286e-01   p_cons 2.198571e-02   p_joint 2.004571e-01

Outputting figure to mutsig2_images.part000000000167/STAG1.3_3909_70000_0.75433_0.021986_0.20046.png
                gene_name: STAG1
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
STAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
STAP1   10000 perm   2 sec   (6265 perm/sec)   p_kst 7.300000e-03   p_cons 6.295000e-01   p_joint 1.710000e-02

Joint ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
Cons ci ratio: 2.020511e-02	ci left: 6.463560e-01	ci right 6.595995e-01	k: 13060	n:20000
KS ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
STAP1   20000 perm   4 sec   (5540 perm/sec)   p_kst 7.450000e-03   p_cons 6.530000e-01   p_joint 1.100000e-02

Joint ci ratio: 2.152558e-01	ci left: 9.755930e-03	ci right 1.214020e-02	k: 327	n:30000
Cons ci ratio: 1.645761e-02	ci left: 6.486861e-01	ci right 6.594840e-01	k: 19623	n:30000
KS ci ratio: 2.597662e-01	ci left: 6.554965e-03	ci right 8.542192e-03	k: 225	n:30000
STAP1   30000 perm   6 sec   (5249 perm/sec)   p_kst 7.500000e-03   p_cons 6.541000e-01   p_joint 1.090000e-02

Joint ci ratio: 1.864896e-01	ci left: 9.905587e-03	ci right 1.196634e-02	k: 436	n:40000
Cons ci ratio: 1.421739e-02	ci left: 6.505436e-01	ci right 6.598839e-01	k: 26209	n:40000
KS ci ratio: 2.269980e-01	ci left: 6.559940e-03	ci right 8.262746e-03	k: 295	n:40000
STAP1   40000 perm   8 sec   (5014 perm/sec)   p_kst 7.375000e-03   p_cons 6.552250e-01   p_joint 1.090000e-02

Joint ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
Cons ci ratio: 1.269523e-02	ci left: 6.517971e-01	ci right 6.601447e-01	k: 32799	n:50000
KS ci ratio: 2.035887e-01	ci left: 6.610526e-03	ci right 8.127513e-03	k: 367	n:50000
STAP1   50000 perm   10 sec   (4876 perm/sec)   p_kst 7.340000e-03   p_cons 6.559800e-01   p_joint 1.100000e-02

Joint ci ratio: 1.499163e-01	ci left: 1.042147e-02	ci right 1.212630e-02	k: 675	n:60000
Cons ci ratio: 1.156253e-02	ci left: 6.532024e-01	ci right 6.608157e-01	k: 39421	n:60000
KS ci ratio: 1.845084e-01	ci left: 6.777515e-03	ci right 8.170762e-03	k: 447	n:60000
STAP1   60000 perm   13 sec   (4759 perm/sec)   p_kst 7.450000e-03   p_cons 6.570167e-01   p_joint 1.125000e-02

Joint ci ratio: 1.414183e-01	ci left: 1.008885e-02	ci right 1.163781e-02	k: 759	n:70000
Cons ci ratio: 1.071848e-02	ci left: 6.529113e-01	ci right 6.599615e-01	k: 45951	n:70000
KS ci ratio: 1.702755e-01	ci left: 6.874200e-03	ci right 8.167126e-03	k: 525	n:70000
STAP1   70000 perm   15 sec   (4654 perm/sec)   p_kst 7.500000e-03   p_cons 6.564429e-01   p_joint 1.084286e-02

Joint ci ratio: 1.371204e-01	ci left: 9.418678e-03	ci right 1.081719e-02	k: 808	n:80000
Cons ci ratio: 1.004219e-02	ci left: 6.524207e-01	ci right 6.590180e-01	k: 52458	n:80000
KS ci ratio: 1.574599e-01	ci left: 7.081917e-03	ci right 8.304192e-03	k: 614	n:80000
STAP1   80000 perm   18 sec   (4554 perm/sec)   p_kst 7.675000e-03   p_cons 6.557250e-01   p_joint 1.010000e-02

Joint ci ratio: 1.257079e-01	ci left: 1.001654e-02	ci right 1.137083e-02	k: 961	n:90000
Cons ci ratio: 9.492882e-03	ci left: 6.514162e-01	ci right 6.576405e-01	k: 58908	n:90000
KS ci ratio: 1.480108e-01	ci left: 7.160685e-03	ci right 8.315827e-03	k: 695	n:90000
STAP1   90000 perm   20 sec   (4454 perm/sec)   p_kst 7.722222e-03   p_cons 6.545333e-01   p_joint 1.067778e-02

Joint ci ratio: 1.197614e-01	ci left: 9.964795e-03	ci right 1.124383e-02	k: 1059	n:100000
Cons ci ratio: 9.014178e-03	ci left: 6.511525e-01	ci right 6.570586e-01	k: 65411	n:100000
KS ci ratio: 1.401721e-01	ci left: 7.215803e-03	ci right 8.313037e-03	k: 775	n:100000
STAP1   100000 perm   23 sec   (4366 perm/sec)   p_kst 7.750000e-03   p_cons 6.541100e-01   p_joint 1.059000e-02

Joint ci ratio: 1.131626e-01	ci left: 1.017990e-02	ci right 1.140974e-02	k: 1186	n:110000
Cons ci ratio: 8.595568e-03	ci left: 6.512441e-01	ci right 6.568751e-01	k: 71947	n:110000
KS ci ratio: 1.323733e-01	ci left: 7.385291e-03	ci right 8.440902e-03	k: 869	n:110000
STAP1   110000 perm   26 sec   (4284 perm/sec)   p_kst 7.900000e-03   p_cons 6.540636e-01   p_joint 1.078182e-02

Joint ci ratio: 1.079207e-01	ci left: 1.028776e-02	ci right 1.146939e-02	k: 1304	n:120000
Cons ci ratio: 8.233975e-03	ci left: 6.511254e-01	ci right 6.565172e-01	k: 78459	n:120000
KS ci ratio: 1.260099e-01	ci left: 7.495647e-03	ci right 8.511679e-03	k: 959	n:120000
STAP1   120000 perm   29 sec   (4199 perm/sec)   p_kst 7.991667e-03   p_cons 6.538250e-01   p_joint 1.086667e-02

Joint ci ratio: 1.037147e-01	ci left: 1.030518e-02	ci right 1.143987e-02	k: 1412	n:130000
Cons ci ratio: 7.895398e-03	ci left: 6.521235e-01	ci right 6.573003e-01	k: 85113	n:130000
KS ci ratio: 1.213018e-01	ci left: 7.485590e-03	ci right 8.459626e-03	k: 1035	n:130000
STAP1   130000 perm   32 sec   (4120 perm/sec)   p_kst 7.961538e-03   p_cons 6.547154e-01   p_joint 1.086154e-02

Joint ci ratio: 9.993177e-02	ci left: 1.032785e-02	ci right 1.142112e-02	k: 1521	n:140000
Cons ci ratio: 7.618196e-03	ci left: 6.516231e-01	ci right 6.566134e-01	k: 91577	n:140000
KS ci ratio: 1.173510e-01	ci left: 7.442902e-03	ci right 8.377652e-03	k: 1106	n:140000
STAP1   140000 perm   35 sec   (4044 perm/sec)   p_kst 7.900000e-03   p_cons 6.541214e-01   p_joint 1.086429e-02

Joint ci ratio: 7.072935e-02	ci left: 1.935643e-02	ci right 2.078221e-02	k: 3009	n:150000
Cons ci ratio: 7.350580e-03	ci left: 6.522809e-01	ci right 6.570998e-01	k: 98204	n:150000
KS ci ratio: 1.132791e-01	ci left: 7.471141e-03	ci right 8.374702e-03	k: 1187	n:150000
STAP1   150000 perm   38 sec   (3974 perm/sec)   p_kst 7.913333e-03   p_cons 6.546933e-01   p_joint 2.006000e-02

Joint ci ratio: 6.842544e-02	ci left: 1.941177e-02	ci right 2.079320e-02	k: 3215	n:160000
Cons ci ratio: 7.125036e-03	ci left: 6.518573e-01	ci right 6.565246e-01	k: 104671	n:160000
KS ci ratio: 1.098219e-01	ci left: 7.465941e-03	ci right 8.339532e-03	k: 1263	n:160000
STAP1   160000 perm   41 sec   (3908 perm/sec)   p_kst 7.893750e-03   p_cons 6.541938e-01   p_joint 2.009375e-02

Joint ci ratio: 7.340161e-02	ci left: 1.589398e-02	ci right 1.711082e-02	k: 2804	n:170000
Cons ci ratio: 6.908882e-03	ci left: 6.521515e-01	ci right 6.566786e-01	k: 111251	n:170000
KS ci ratio: 1.063038e-01	ci left: 7.513265e-03	ci right 8.362469e-03	k: 1348	n:170000
STAP1   170000 perm   44 sec   (3842 perm/sec)   p_kst 7.929412e-03   p_cons 6.544176e-01   p_joint 1.649412e-02

Joint ci ratio: 8.950245e-02	ci left: 1.007226e-02	ci right 1.102138e-02	k: 1897	n:180000
Cons ci ratio: 6.717377e-03	ci left: 6.520031e-01	ci right 6.564031e-01	k: 117757	n:180000
KS ci ratio: 1.032124e-01	ci left: 7.539486e-03	ci right 8.365368e-03	k: 1430	n:180000
STAP1   180000 perm   48 sec   (3779 perm/sec)   p_kst 7.944444e-03   p_cons 6.542056e-01   p_joint 1.053889e-02

Joint ci ratio: 8.974273e-02	ci left: 9.495708e-03	ci right 1.039302e-02	k: 1888	n:190000
Cons ci ratio: 6.536700e-03	ci left: 6.521671e-01	ci right 6.564493e-01	k: 124319	n:190000
KS ci ratio: 1.007795e-01	ci left: 7.501686e-03	ci right 8.302911e-03	k: 1500	n:190000
STAP1   190000 perm   51 sec   (3719 perm/sec)   p_kst 7.894737e-03   p_cons 6.543105e-01   p_joint 9.936842e-03

Joint ci ratio: 8.496834e-02	ci left: 1.008236e-02	ci right 1.098191e-02	k: 2105	n:200000
Cons ci ratio: 6.369153e-03	ci left: 6.523661e-01	ci right 6.565394e-01	k: 130891	n:200000
KS ci ratio: 9.800914e-02	ci left: 7.545922e-03	ci right 8.328441e-03	k: 1586	n:200000
STAP1   200000 perm   55 sec   (3661 perm/sec)   p_kst 7.930000e-03   p_cons 6.544550e-01   p_joint 1.052500e-02

Outputting figure to mutsig2_images.part000000000167/STAP1.3_924_200000_0.00793_0.65446_0.010525.png
                gene_name: STAP1
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 77 percent done.
SRRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
Cons ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
SRRM3   10000 perm   2 sec   (5955 perm/sec)   p_kst 6.040000e-02   p_cons 4.630000e-02   p_joint 1.029000e-01

Joint ci ratio: 1.689838e-01	ci left: 2.398245e-02	ci right 2.845673e-02	k: 523	n:20000
Cons ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
KS ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
SRRM3   20000 perm   4 sec   (5215 perm/sec)   p_kst 6.045000e-02   p_cons 4.880000e-02   p_joint 2.615000e-02

Joint ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
Cons ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
KS ci ratio: 8.949993e-02	ci left: 5.740394e-02	ci right 6.281498e-02	k: 1802	n:30000
SRRM3   30000 perm   6 sec   (4997 perm/sec)   p_kst 6.006667e-02   p_cons 4.350000e-02   p_joint 1.756667e-02

Joint ci ratio: 1.181661e-01	ci left: 2.519071e-02	ci right 2.837849e-02	k: 1070	n:40000
Cons ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
KS ci ratio: 7.738969e-02	ci left: 5.793762e-02	ci right 6.262646e-02	k: 2410	n:40000
SRRM3   40000 perm   8 sec   (4807 perm/sec)   p_kst 6.025000e-02   p_cons 4.235000e-02   p_joint 2.675000e-02

Joint ci ratio: 1.291193e-01	ci left: 1.693016e-02	ci right 1.928627e-02	k: 904	n:50000
Cons ci ratio: 8.308690e-02	ci left: 4.084643e-02	ci right 4.440692e-02	k: 2130	n:50000
KS ci ratio: 6.917991e-02	ci left: 5.824876e-02	ci right 6.244247e-02	k: 3016	n:50000
SRRM3   50000 perm   11 sec   (4667 perm/sec)   p_kst 6.032000e-02   p_cons 4.260000e-02   p_joint 1.808000e-02

Joint ci ratio: 1.168868e-01	ci left: 1.732347e-02	ci right 1.949013e-02	k: 1103	n:60000
Cons ci ratio: 7.586633e-02	ci left: 4.098153e-02	ci right 4.422957e-02	k: 2555	n:60000
KS ci ratio: 6.277865e-02	ci left: 5.909793e-02	ci right 6.294467e-02	k: 3660	n:60000
SRRM3   60000 perm   13 sec   (4521 perm/sec)   p_kst 6.100000e-02   p_cons 4.258333e-02   p_joint 1.838333e-02

Joint ci ratio: 1.073701e-01	ci left: 1.768152e-02	ci right 1.970152e-02	k: 1307	n:70000
Cons ci ratio: 7.031256e-02	ci left: 4.101746e-02	ci right 4.402061e-02	k: 2975	n:70000
KS ci ratio: 5.831226e-02	ci left: 5.887177e-02	ci right 6.242190e-02	k: 4244	n:70000
SRRM3   70000 perm   16 sec   (4422 perm/sec)   p_kst 6.062857e-02   p_cons 4.250000e-02   p_joint 1.867143e-02

Joint ci ratio: 8.546133e-02	ci left: 2.452878e-02	ci right 2.673080e-02	k: 2049	n:80000
Cons ci ratio: 6.596555e-02	ci left: 4.087874e-02	ci right 4.367958e-02	k: 3381	n:80000
KS ci ratio: 5.462069e-02	ci left: 5.883296e-02	ci right 6.214900e-02	k: 4838	n:80000
SRRM3   80000 perm   18 sec   (4334 perm/sec)   p_kst 6.047500e-02   p_cons 4.226250e-02   p_joint 2.561250e-02

Outputting figure to mutsig2_images.part000000000167/SRRM3.2_2017_80000_0.060475_0.042263_0.025612.png
                gene_name: SRRM3
               theta_stop: 0.085 
                    nperm: 80000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 79 percent done.
SRRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
Cons ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
KS ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
SRRT   10000 perm   2 sec   (5600 perm/sec)   p_kst 9.039000e-01   p_cons 6.516000e-01   p_joint 9.921000e-01

Outputting figure to mutsig2_images.part000000000167/SRRT.2_2707_10000_0.9039_0.6516_0.9921.png
                gene_name: SRRT
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
SSH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.203437e-02	ci left: 7.514032e-01	ci right 7.682452e-01	k: 7599	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
SSH3   10000 perm   2 sec   (6035 perm/sec)   p_kst 2.337000e-01   p_cons 7.904000e-01   p_joint 7.599000e-01

Outputting figure to mutsig2_images.part000000000167/SSH3.2_2036_10000_0.2337_0.7904_0.7599.png
                gene_name: SSH3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 83 percent done.
SSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
Cons ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
KS ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
SSR1   10000 perm   1 sec   (6876 perm/sec)   p_kst 6.577000e-01   p_cons 2.031000e-01   p_joint 5.561000e-01

Outputting figure to mutsig2_images.part000000000167/SSR1.2_893_10000_0.6577_0.2031_0.5561.png
                gene_name: SSR1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 85 percent done.
SSR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
SSR4   10000 perm   1 sec   (6710 perm/sec)   p_kst 6.556000e-01   p_cons 3.829000e-01   p_joint 9.599000e-01

Outputting figure to mutsig2_images.part000000000167/SSR4.2_546_10000_0.6556_0.3829_0.9599.png
                gene_name: SSR4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 87 percent done.
SSTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
Cons ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
SSTR3   10000 perm   2 sec   (6327 perm/sec)   p_kst 6.506000e-01   p_cons 3.646000e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR3.2_1261_10000_0.6506_0.3646_0.5065.png
                gene_name: SSTR3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 88 percent done.
SSTR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786775e-02	ci left: 8.204583e-01	ci right 8.353502e-01	k: 8280	n:10000
Cons ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
KS ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
SSTR5   10000 perm   2 sec   (6650 perm/sec)   p_kst 5.135000e-01   p_cons 3.660000e-01   p_joint 8.280000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR5.2_1099_10000_0.5135_0.366_0.828.png
                gene_name: SSTR5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
SSU72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
SSU72   10000 perm   1 sec   (6910 perm/sec)   p_kst 2.160000e-02   p_cons 1.590000e-02   p_joint 2.400000e-02

Joint ci ratio: 4.055072e-02	ci left: 3.119455e-01	ci right 3.249074e-01	k: 6368	n:20000
Cons ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
KS ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
SSU72   20000 perm   3 sec   (6023 perm/sec)   p_kst 2.170000e-02   p_cons 1.760000e-02   p_joint 3.184000e-01

Joint ci ratio: 3.373621e-02	ci left: 3.051002e-01	ci right 3.156032e-01	k: 9310	n:30000
Cons ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
KS ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
SSU72   30000 perm   5 sec   (5716 perm/sec)   p_kst 2.330000e-02   p_cons 1.656667e-02   p_joint 3.103333e-01

Joint ci ratio: 2.911041e-02	ci left: 3.073613e-01	ci right 3.164660e-01	k: 12476	n:40000
Cons ci ratio: 1.499399e-01	ci left: 1.553911e-02	ci right 1.808174e-02	k: 671	n:40000
KS ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
SSU72   40000 perm   7 sec   (5508 perm/sec)   p_kst 2.305000e-02   p_cons 1.677500e-02   p_joint 3.119000e-01

Joint ci ratio: 2.609580e-02	ci left: 3.068838e-01	ci right 3.150181e-01	k: 15547	n:50000
Cons ci ratio: 1.333857e-01	ci left: 1.584633e-02	ci right 1.813024e-02	k: 848	n:50000
KS ci ratio: 1.142563e-01	ci left: 2.168437e-02	ci right 2.433141e-02	k: 1149	n:50000
SSU72   50000 perm   9 sec   (5338 perm/sec)   p_kst 2.298000e-02   p_cons 1.696000e-02   p_joint 3.109400e-01

Joint ci ratio: 2.381062e-02	ci left: 3.074465e-01	ci right 3.148718e-01	k: 18669	n:60000
Cons ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
KS ci ratio: 1.045343e-01	ci left: 2.170164e-02	ci right 2.411148e-02	k: 1373	n:60000
SSU72   60000 perm   12 sec   (5204 perm/sec)   p_kst 2.288333e-02   p_cons 1.698333e-02   p_joint 3.111500e-01

Joint ci ratio: 2.195480e-02	ci left: 3.094658e-01	ci right 3.163497e-01	k: 21903	n:70000
Cons ci ratio: 1.133445e-01	ci left: 1.584696e-02	ci right 1.776483e-02	k: 1175	n:70000
KS ci ratio: 9.610723e-02	ci left: 2.209747e-02	ci right 2.434229e-02	k: 1624	n:70000
SSU72   70000 perm   14 sec   (5072 perm/sec)   p_kst 2.320000e-02   p_cons 1.678571e-02   p_joint 3.129000e-01

Joint ci ratio: 2.003841e-02	ci left: 3.203208e-01	ci right 3.268170e-01	k: 25885	n:80000
Cons ci ratio: 1.062253e-01	ci left: 1.584767e-02	ci right 1.763762e-02	k: 1338	n:80000
KS ci ratio: 9.005275e-02	ci left: 2.209456e-02	ci right 2.419022e-02	k: 1850	n:80000
SSU72   80000 perm   16 sec   (4957 perm/sec)   p_kst 2.312500e-02   p_cons 1.672500e-02   p_joint 3.235625e-01

Joint ci ratio: 1.892060e-02	ci left: 3.198564e-01	ci right 3.259772e-01	k: 29062	n:90000
Cons ci ratio: 9.992698e-02	ci left: 1.597039e-02	ci right 1.766096e-02	k: 1512	n:90000
KS ci ratio: 8.526747e-02	ci left: 2.196521e-02	ci right 2.393237e-02	k: 2064	n:90000
SSU72   90000 perm   19 sec   (4848 perm/sec)   p_kst 2.293333e-02   p_cons 1.680000e-02   p_joint 3.229111e-01

Outputting figure to mutsig2_images.part000000000167/SSU72.2_605_90000_0.022933_0.0168_0.32291.png
                gene_name: SSU72
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 92 percent done.
SSX2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
Cons ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
KS ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
SSX2IP   10000 perm   2 sec   (6529 perm/sec)   p_kst 5.037000e-01   p_cons 3.154000e-01   p_joint 5.603000e-01

Outputting figure to mutsig2_images.part000000000167/SSX2IP.2_1897_10000_0.5037_0.3154_0.5603.png
                gene_name: SSX2IP
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 94 percent done.
ST3GAL4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 96 percent done.
ST8SIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
KS ci ratio: 1.891238e-02	ci left: 8.033895e-01	ci right 8.188289e-01	k: 8112	n:10000
ST8SIA1   10000 perm   1 sec   (6690 perm/sec)   p_kst 8.112000e-01   p_cons 6.973000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST8SIA1.2_1091_10000_0.8112_0.6973_1.png
                gene_name: ST8SIA1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
STAG3L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
STAG3L4   10000 perm   1 sec   (7144 perm/sec)   p_kst 6.460000e-01   p_cons 2.592000e-01   p_joint 4.146000e-01

Outputting figure to mutsig2_images.part000000000167/STAG3L4.2_469_10000_0.646_0.2592_0.4146.png
                gene_name: STAG3L4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000167
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 167 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1416>
Subject: Job 4422585: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1416>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000168> was used as the working directory.
Started at Wed Oct 24 18:08:52 2012
Results reported at Wed Oct 24 21:55:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000168.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000168.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 168  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000168.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14661.69 sec.
    Max Memory :      9328 MB
    Max Swap   :     11809 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
168
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 168
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 168: processing genes 15109 - 15199
Calculating significance of each gene.
Using projection method.
15109	STARD3	5.917633e-01
15110	STARD3NL	6.081967e-01
15111	STARD4	5.879999e-01
15112	STARD5	1
15113	STARD6	7.028507e-01
15114	STARD7	1.168561e-01
15115	STARD8	1.641033e-01
15116	STAT1	9.468448e-01
15117	STAT2	6.515125e-01
15118	STAT3	9.768540e-01
15119	STAT4	9.874980e-01
15120	STAT5A	7.558772e-01
15121	STAT5B	7.814160e-01
15122	STAT6	1
15123	STATH	1
15124	STAU1	7.267036e-01
15125	STAU2	7.951539e-01
15126	STBD1	4.875841e-01
15127	STC1	4.531427e-01
15128	STC2	8.304087e-01
15129	STEAP1	7.567856e-01
15130	STEAP2	6.235006e-01
15131	STEAP3	1
15132	STEAP4	6.856160e-01
15133	STH	5.417439e-01
15134	STIL	8.019430e-01
15135	STIM1	4.791506e-01
15136	STIM2	8.143218e-01
15137	STIP1	2.720900e-01
15138	STK10	1
15139	STK11	5.662137e-15
15140	STK11IP	1
15141	STK16	1
15142	STK17A	1
15143	STK17B	2.195075e-02
15144	STK19	8.588686e-01
15145	STK24	6.719960e-01
15146	STK25	5.277855e-01
15147	STK3	1
15148	STK31	2.971651e-01
15149	STK32A	7.039089e-01
15150	STK32B	1.180829e-01
15151	STK32C	6.306269e-01
15152	STK33	9.392647e-01
15153	STK35	1
15154	STK36	1
15155	STK38	7.941082e-01
15156	STK38L	1
15157	STK39	2.947594e-01
15158	STK4	3.318411e-01
15159	STK40	1
15160	STMN1	3.395991e-01
15161	STMN2	4.325672e-01
15162	STMN3	6.409517e-01
15163	STMN4	5.366662e-01
15164	STOM	1
15165	STOML1	4.931638e-01
15166	STOML2	7.095085e-01
15167	STOML3	2.690274e-02
15168	STON1	1
15169	STON1-GTF2A1L	9.929601e-01
15170	STON2	9.902381e-01
15171	STOX1	4.023547e-01
15172	STOX2	1
15173	STRA13	1
15174	STRA6	7.104821e-01
15175	STRA8	6.148008e-02
15176	STRADA	1
15177	STRADB	7.573279e-01
15178	STRAP	6.536543e-01
15179	STRBP	1
15180	STRC	9.411771e-01
15181	STRN	7.010536e-01
15182	STRN3	9.587543e-01
15183	STRN4	9.749245e-01
15184	STS	2.726546e-01
15185	STT3A	9.320490e-01
15186	STT3B	8.424255e-01
15187	STUB1	7.744160e-01
15188	STX10	1
15189	STX11	8.290284e-01
15190	STX12	2.716345e-01
15191	STX16	7.349593e-01
15192	STX17	6.404288e-01
15193	STX18	3.949974e-01
15194	STX19	4.871477e-01
15195	STX1A	3.534048e-01
15196	STX1B	8.507931e-01
15197	STX2	9.914252e-03
15198	STX3	2.339911e-01
15199	STX4	1
Done

Running MutSig 2:
Scatter job 168: processing genes 15109 - 15199
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
STK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
STK11   10000 perm   2 sec   (4109 perm/sec)   p_kst 6.000000e-04   p_cons 1.100000e-02   p_joint 0

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 2.652715e-01	ci left: 9.367279e-03	ci right 1.227757e-02	k: 215	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
STK11   20000 perm   8 sec   (2370 perm/sec)   p_kst 4.500000e-04   p_cons 1.075000e-02   p_joint 3.950000e-03

Joint ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
Cons ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
STK11   30000 perm   11 sec   (2623 perm/sec)   p_kst 4.333333e-04   p_cons 1.043333e-02   p_joint 2.033333e-03

Joint ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
Cons ci ratio: 1.895841e-01	ci left: 9.571908e-03	ci right 1.160009e-02	k: 422	n:40000
KS ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
STK11   40000 perm   14 sec   (2761 perm/sec)   p_kst 3.750000e-04   p_cons 1.055000e-02   p_joint 1.875000e-03

Joint ci ratio: 4.616391e-01	ci left: 1.109193e-03	ci right 1.790804e-03	k: 71	n:50000
Cons ci ratio: 1.662259e-01	ci left: 1.008506e-02	ci right 1.193237e-02	k: 549	n:50000
KS ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
STK11   50000 perm   18 sec   (2835 perm/sec)   p_kst 3.200000e-04   p_cons 1.098000e-02   p_joint 1.420000e-03

Joint ci ratio: 4.248789e-01	ci left: 1.116844e-03	ci right 1.733006e-03	k: 84	n:60000
Cons ci ratio: 1.517430e-01	ci left: 1.016477e-02	ci right 1.184970e-02	k: 659	n:60000
KS ci ratio: 8.991598e-01	ci left: 1.778084e-04	ci right 4.740881e-04	k: 18	n:60000
STK11   60000 perm   21 sec   (2876 perm/sec)   p_kst 3.000000e-04   p_cons 1.098333e-02   p_joint 1.400000e-03

Joint ci ratio: 3.977370e-01	ci left: 1.110998e-03	ci right 1.674495e-03	k: 96	n:70000
Cons ci ratio: 1.406717e-01	ci left: 1.019914e-02	ci right 1.175608e-02	k: 767	n:70000
KS ci ratio: 8.172364e-01	ci left: 1.969713e-04	ci right 4.757939e-04	k: 22	n:70000
STK11   70000 perm   24 sec   (2894 perm/sec)   p_kst 3.142857e-04   p_cons 1.095714e-02   p_joint 1.371429e-03

Joint ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
Cons ci ratio: 1.310377e-01	ci left: 1.033714e-02	ci right 1.179865e-02	k: 884	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
STK11   80000 perm   28 sec   (2899 perm/sec)   p_kst 3.250000e-04   p_cons 1.105000e-02   p_joint 1.250000e-03

Joint ci ratio: 4.200626e-01	ci left: 7.643900e-04	ci right 1.179971e-03	k: 86	n:90000
Cons ci ratio: 1.233949e-01	ci left: 1.040421e-02	ci right 1.178313e-02	k: 997	n:90000
KS ci ratio: 7.155675e-01	ci left: 2.158076e-04	ci right 4.627323e-04	k: 29	n:90000
STK11   90000 perm   31 sec   (2894 perm/sec)   p_kst 3.222222e-04   p_cons 1.107778e-02   p_joint 9.555556e-04

Joint ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
Cons ci ratio: 1.159517e-01	ci left: 1.064437e-02	ci right 1.196420e-02	k: 1129	n:100000
KS ci ratio: 6.624817e-01	ci left: 2.354710e-04	ci right 4.750838e-04	k: 34	n:100000
STK11   100000 perm   35 sec   (2877 perm/sec)   p_kst 3.400000e-04   p_cons 1.129000e-02   p_joint 9.600000e-04

Joint ci ratio: 4.130333e-01	ci left: 6.498153e-04	ci right 9.955631e-04	k: 89	n:110000
Cons ci ratio: 1.105107e-01	ci left: 1.068373e-02	ci right 1.194223e-02	k: 1243	n:110000
KS ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
STK11   110000 perm   38 sec   (2859 perm/sec)   p_kst 3.363636e-04   p_cons 1.130000e-02   p_joint 8.090909e-04

Joint ci ratio: 4.085299e-01	ci left: 6.106053e-04	ci right 9.309849e-04	k: 91	n:120000
Cons ci ratio: 1.057308e-01	ci left: 1.072586e-02	ci right 1.193127e-02	k: 1358	n:120000
KS ci ratio: 6.120940e-01	ci left: 2.381486e-04	ci right 4.538780e-04	k: 40	n:120000
STK11   120000 perm   42 sec   (2840 perm/sec)   p_kst 3.333333e-04   p_cons 1.131667e-02   p_joint 7.583333e-04

Joint ci ratio: 3.879840e-01	ci left: 6.328598e-04	ci right 9.439531e-04	k: 101	n:130000
Cons ci ratio: 1.012789e-01	ci left: 1.081499e-02	ci right 1.197619e-02	k: 1480	n:130000
KS ci ratio: 5.656966e-01	ci left: 2.656566e-04	ci right 4.807408e-04	k: 47	n:130000
STK11   130000 perm   46 sec   (2822 perm/sec)   p_kst 3.615385e-04   p_cons 1.138462e-02   p_joint 7.769231e-04

Joint ci ratio: 4.650988e-01	ci left: 3.897946e-04	ci right 6.316783e-04	k: 70	n:140000
Cons ci ratio: 9.743805e-02	ci left: 1.087139e-02	ci right 1.199184e-02	k: 1599	n:140000
KS ci ratio: 5.383496e-01	ci left: 2.774127e-04	ci right 4.870510e-04	k: 52	n:140000
STK11   140000 perm   50 sec   (2801 perm/sec)   p_kst 3.714286e-04   p_cons 1.142143e-02   p_joint 5.000000e-04

Joint ci ratio: 4.824109e-01	ci left: 3.344529e-04	ci right 5.522860e-04	k: 65	n:150000
Cons ci ratio: 9.638549e-02	ci left: 1.038068e-02	ci right 1.143835e-02	k: 1635	n:150000
KS ci ratio: 5.146200e-01	ci left: 2.878206e-04	ci right 4.923064e-04	k: 57	n:150000
STK11   150000 perm   54 sec   (2779 perm/sec)   p_kst 3.800000e-04   p_cons 1.090000e-02   p_joint 4.333333e-04

Joint ci ratio: 4.788024e-01	ci left: 3.190414e-04	ci right 5.247717e-04	k: 66	n:160000
Cons ci ratio: 9.319177e-02	ci left: 1.042751e-02	ci right 1.145283e-02	k: 1749	n:160000
KS ci ratio: 5.018073e-01	ci left: 2.861763e-04	ci right 4.826733e-04	k: 60	n:160000
STK11   160000 perm   58 sec   (2754 perm/sec)   p_kst 3.750000e-04   p_cons 1.093125e-02   p_joint 4.125000e-04

Joint ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
Cons ci ratio: 9.039396e-02	ci left: 1.044634e-02	ci right 1.144103e-02	k: 1859	n:170000
KS ci ratio: 4.718154e-01	ci left: 3.106286e-04	ci right 5.070682e-04	k: 68	n:170000
STK11   170000 perm   62 sec   (2730 perm/sec)   p_kst 4.000000e-04   p_cons 1.093529e-02   p_joint 3.058824e-04

Joint ci ratio: 5.284905e-01	ci left: 2.253770e-04	ci right 3.914170e-04	k: 54	n:180000
Cons ci ratio: 8.767653e-02	ci left: 1.050153e-02	ci right 1.146988e-02	k: 1976	n:180000
KS ci ratio: 4.587070e-01	ci left: 3.129881e-04	ci right 5.037077e-04	k: 72	n:180000
STK11   180000 perm   67 sec   (2706 perm/sec)   p_kst 4.000000e-04   p_cons 1.097778e-02   p_joint 3.000000e-04

Joint ci ratio: 5.146413e-01	ci left: 2.272247e-04	ci right 3.886676e-04	k: 57	n:190000
Cons ci ratio: 8.583505e-02	ci left: 1.039160e-02	ci right 1.132868e-02	k: 2062	n:190000
KS ci ratio: 4.301808e-01	ci left: 3.432618e-04	ci right 5.356754e-04	k: 82	n:190000
STK11   190000 perm   71 sec   (2683 perm/sec)   p_kst 4.315789e-04   p_cons 1.085263e-02   p_joint 3.000000e-04

Joint ci ratio: 5.102640e-01	ci left: 2.202163e-04	ci right 3.748763e-04	k: 58	n:200000
Cons ci ratio: 8.344012e-02	ci left: 1.045934e-02	ci right 1.137492e-02	k: 2182	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
STK11   200000 perm   75 sec   (2658 perm/sec)   p_kst 4.300000e-04   p_cons 1.091000e-02   p_joint 2.900000e-04

Joint ci ratio: 4.937983e-01	ci left: 2.263646e-04	ci right 3.784662e-04	k: 62	n:210000
Cons ci ratio: 8.139603e-02	ci left: 1.047895e-02	ci right 1.137272e-02	k: 2293	n:210000
KS ci ratio: 4.063941e-01	ci left: 3.531808e-04	ci right 5.372583e-04	k: 92	n:210000
STK11   210000 perm   80 sec   (2633 perm/sec)   p_kst 4.380952e-04   p_cons 1.091905e-02   p_joint 2.952381e-04

Joint ci ratio: 4.861432e-01	ci left: 2.240424e-04	ci right 3.714694e-04	k: 64	n:220000
Cons ci ratio: 7.962917e-02	ci left: 1.046139e-02	ci right 1.133339e-02	k: 2396	n:220000
KS ci ratio: 3.979270e-01	ci left: 3.534698e-04	ci right 5.328490e-04	k: 96	n:220000
STK11   220000 perm   84 sec   (2608 perm/sec)   p_kst 4.363636e-04   p_cons 1.089091e-02   p_joint 2.909091e-04

Joint ci ratio: 2.770647e-01	ci left: 7.492170e-04	ci right 9.940783e-04	k: 199	n:230000
Cons ci ratio: 6.668875e-02	ci left: 1.430618e-02	ci right 1.529740e-02	k: 3403	n:230000
KS ci ratio: 3.880509e-01	ci left: 3.576927e-04	ci right 5.335581e-04	k: 101	n:230000
STK11   230000 perm   89 sec   (2584 perm/sec)   p_kst 4.391304e-04   p_cons 1.479565e-02   p_joint 8.652174e-04

Joint ci ratio: 2.750131e-01	ci left: 7.296335e-04	ci right 9.660230e-04	k: 202	n:240000
Cons ci ratio: 6.532197e-02	ci left: 1.430019e-02	ci right 1.526992e-02	k: 3547	n:240000
KS ci ratio: 3.788754e-01	ci left: 3.616142e-04	ci right 5.341584e-04	k: 106	n:240000
STK11   240000 perm   94 sec   (2559 perm/sec)   p_kst 4.416667e-04   p_cons 1.477917e-02   p_joint 8.416667e-04

Joint ci ratio: 2.791778e-01	ci left: 6.781129e-04	ci right 9.017228e-04	k: 196	n:250000
Cons ci ratio: 6.380825e-02	ci left: 1.439722e-02	ci right 1.535007e-02	k: 3717	n:250000
KS ci ratio: 3.686785e-01	ci left: 3.688957e-04	ci right 5.390359e-04	k: 112	n:250000
STK11   250000 perm   99 sec   (2535 perm/sec)   p_kst 4.480000e-04   p_cons 1.486800e-02   p_joint 7.840000e-04

Joint ci ratio: 2.777745e-01	ci left: 6.591859e-04	ci right 8.752707e-04	k: 198	n:260000
Cons ci ratio: 6.261618e-02	ci left: 1.438479e-02	ci right 1.531838e-02	k: 3860	n:260000
KS ci ratio: 3.607827e-01	ci left: 3.721760e-04	ci right 5.392891e-04	k: 117	n:260000
STK11   260000 perm   104 sec   (2511 perm/sec)   p_kst 4.500000e-04   p_cons 1.484615e-02   p_joint 7.615385e-04

Joint ci ratio: 3.005551e-01	ci left: 5.351360e-04	ci right 7.276977e-04	k: 169	n:270000
Cons ci ratio: 6.151190e-02	ci left: 1.436248e-02	ci right 1.527761e-02	k: 4000	n:270000
KS ci ratio: 3.548193e-01	ci left: 3.718749e-04	ci right 5.354565e-04	k: 121	n:270000
STK11   270000 perm   109 sec   (2485 perm/sec)   p_kst 4.481481e-04   p_cons 1.481481e-02   p_joint 6.259259e-04

Joint ci ratio: 2.962310e-01	ci left: 5.325444e-04	ci right 7.208986e-04	k: 174	n:280000
Cons ci ratio: 6.028697e-02	ci left: 1.442635e-02	ci right 1.532659e-02	k: 4164	n:280000
KS ci ratio: 3.519478e-01	ci left: 3.651023e-04	ci right 5.241078e-04	k: 123	n:280000
STK11   280000 perm   114 sec   (2460 perm/sec)   p_kst 4.392857e-04   p_cons 1.487143e-02   p_joint 6.214286e-04

Joint ci ratio: 2.888940e-01	ci left: 5.429388e-04	ci right 7.293447e-04	k: 183	n:290000
Cons ci ratio: 5.937656e-02	ci left: 1.436704e-02	ci right 1.524959e-02	k: 4293	n:290000
KS ci ratio: 3.491449e-01	ci left: 3.588017e-04	ci right 5.135369e-04	k: 125	n:290000
STK11   290000 perm   119 sec   (2437 perm/sec)   p_kst 4.310345e-04   p_cons 1.480345e-02   p_joint 6.310345e-04

Joint ci ratio: 2.828106e-01	ci left: 5.495963e-04	ci right 7.336059e-04	k: 191	n:300000
Cons ci ratio: 5.840572e-02	ci left: 1.436107e-02	ci right 1.522834e-02	k: 4437	n:300000
KS ci ratio: 3.450620e-01	ci left: 3.559698e-04	ci right 5.072876e-04	k: 128	n:300000
STK11   300000 perm   124 sec   (2414 perm/sec)   p_kst 4.266667e-04   p_cons 1.479000e-02   p_joint 6.366667e-04

Joint ci ratio: 2.858082e-01	ci left: 5.198829e-04	ci right 6.961223e-04	k: 187	n:310000
Cons ci ratio: 5.741744e-02	ci left: 1.438740e-02	ci right 1.524106e-02	k: 4591	n:310000
KS ci ratio: 3.324150e-01	ci left: 3.740027e-04	ci right 5.259134e-04	k: 138	n:310000
STK11   310000 perm   130 sec   (2392 perm/sec)   p_kst 4.451613e-04   p_cons 1.480968e-02   p_joint 6.032258e-04

Joint ci ratio: 2.806310e-01	ci left: 5.239582e-04	ci right 6.977928e-04	k: 194	n:320000
Cons ci ratio: 5.661101e-02	ci left: 1.434440e-02	ci right 1.518317e-02	k: 4723	n:320000
KS ci ratio: 3.243470e-01	ci left: 3.823875e-04	ci right 5.331499e-04	k: 145	n:320000
STK11   320000 perm   135 sec   (2369 perm/sec)   p_kst 4.531250e-04   p_cons 1.475937e-02   p_joint 6.062500e-04

Joint ci ratio: 2.835587e-01	ci left: 4.968159e-04	ci right 6.636727e-04	k: 190	n:330000
Cons ci ratio: 5.571549e-02	ci left: 1.436685e-02	ci right 1.519322e-02	k: 4876	n:330000
KS ci ratio: 3.189316e-01	ci left: 3.847285e-04	ci right 5.333643e-04	k: 150	n:330000
STK11   330000 perm   141 sec   (2346 perm/sec)   p_kst 4.545455e-04   p_cons 1.477576e-02   p_joint 5.757576e-04

Joint ci ratio: 2.799189e-01	ci left: 4.958706e-04	ci right 6.598951e-04	k: 195	n:340000
Cons ci ratio: 5.486669e-02	ci left: 1.438518e-02	ci right 1.519959e-02	k: 5028	n:340000
KS ci ratio: 3.158106e-01	ci left: 3.815336e-04	ci right 5.272014e-04	k: 153	n:340000
STK11   340000 perm   146 sec   (2325 perm/sec)   p_kst 4.500000e-04   p_cons 1.478824e-02   p_joint 5.735294e-04

Joint ci ratio: 2.764157e-01	ci left: 4.949922e-04	ci right 6.563206e-04	k: 200	n:350000
Cons ci ratio: 5.404496e-02	ci left: 1.440819e-02	ci right 1.521130e-02	k: 5182	n:350000
KS ci ratio: 3.117876e-01	ci left: 3.811613e-04	ci right 5.244642e-04	k: 157	n:350000
STK11   350000 perm   152 sec   (2303 perm/sec)   p_kst 4.485714e-04   p_cons 1.480571e-02   p_joint 5.714286e-04

Joint ci ratio: 2.743767e-01	ci left: 4.890001e-04	ci right 6.469972e-04	k: 203	n:360000
Cons ci ratio: 5.347817e-02	ci left: 1.431213e-02	ci right 1.510127e-02	k: 5293	n:360000
KS ci ratio: 3.088698e-01	ci left: 3.782578e-04	ci right 5.188761e-04	k: 160	n:360000
STK11   360000 perm   158 sec   (2282 perm/sec)   p_kst 4.444444e-04   p_cons 1.470278e-02   p_joint 5.638889e-04

Joint ci ratio: 2.723822e-01	ci left: 4.833361e-04	ci right 6.381736e-04	k: 206	n:370000
Cons ci ratio: 5.268207e-02	ci left: 1.435468e-02	ci right 1.513403e-02	k: 5454	n:370000
KS ci ratio: 3.041823e-01	ci left: 3.805090e-04	ci right 5.194019e-04	k: 165	n:370000
STK11   370000 perm   164 sec   (2260 perm/sec)   p_kst 4.459459e-04   p_cons 1.474054e-02   p_joint 5.567568e-04

Joint ci ratio: 2.685183e-01	ci left: 4.853357e-04	ci right 6.382370e-04	k: 212	n:380000
Cons ci ratio: 5.192049e-02	ci left: 1.439508e-02	ci right 1.516498e-02	k: 5615	n:380000
KS ci ratio: 2.988292e-01	ci left: 3.850910e-04	ci right 5.227135e-04	k: 171	n:380000
STK11   380000 perm   170 sec   (2240 perm/sec)   p_kst 4.500000e-04   p_cons 1.477632e-02   p_joint 5.578947e-04

Joint ci ratio: 2.691532e-01	ci left: 4.704994e-04	ci right 6.191362e-04	k: 211	n:390000
Cons ci ratio: 5.124506e-02	ci left: 1.440310e-02	ci right 1.516311e-02	k: 5764	n:390000
KS ci ratio: 2.971078e-01	ci left: 3.799616e-04	ci right 5.148212e-04	k: 173	n:390000
STK11   390000 perm   176 sec   (2220 perm/sec)   p_kst 4.435897e-04   p_cons 1.477949e-02   p_joint 5.410256e-04

Joint ci ratio: 2.743846e-01	ci left: 4.400985e-04	ci right 5.822999e-04	k: 203	n:400000
Cons ci ratio: 5.060401e-02	ci left: 1.440584e-02	ci right 1.515621e-02	k: 5911	n:400000
KS ci ratio: 2.954157e-01	ci left: 3.750909e-04	ci right 5.073215e-04	k: 175	n:400000
STK11   400000 perm   182 sec   (2200 perm/sec)   p_kst 4.375000e-04   p_cons 1.477750e-02   p_joint 5.075000e-04

Joint ci ratio: 2.757419e-01	ci left: 4.248223e-04	ci right 5.628845e-04	k: 201	n:410000
Cons ci ratio: 5.000738e-02	ci left: 1.439646e-02	ci right 1.513725e-02	k: 6053	n:410000
KS ci ratio: 2.913066e-01	ci left: 3.772402e-04	ci right 5.080377e-04	k: 180	n:410000
STK11   410000 perm   188 sec   (2180 perm/sec)   p_kst 4.390244e-04   p_cons 1.476341e-02   p_joint 4.902439e-04

Joint ci ratio: 2.750632e-01	ci left: 4.169238e-04	ci right 5.520279e-04	k: 202	n:420000
Cons ci ratio: 4.939900e-02	ci left: 1.440640e-02	ci right 1.513842e-02	k: 6203	n:420000
KS ci ratio: 2.889226e-01	ci left: 3.748814e-04	ci right 5.036028e-04	k: 183	n:420000
STK11   420000 perm   194 sec   (2160 perm/sec)   p_kst 4.357143e-04   p_cons 1.476905e-02   p_joint 4.809524e-04

Joint ci ratio: 2.743895e-01	ci left: 4.093930e-04	ci right 5.416757e-04	k: 203	n:430000
Cons ci ratio: 4.880451e-02	ci left: 1.442051e-02	ci right 1.514419e-02	k: 6355	n:430000
KS ci ratio: 2.858325e-01	ci left: 3.747951e-04	ci right 5.018621e-04	k: 187	n:430000
STK11   430000 perm   201 sec   (2142 perm/sec)   p_kst 4.348837e-04   p_cons 1.477907e-02   p_joint 4.720930e-04

Joint ci ratio: 2.710874e-01	ci left: 4.106753e-04	ci right 5.415037e-04	k: 208	n:440000
Cons ci ratio: 4.821969e-02	ci left: 1.444078e-02	ci right 1.515654e-02	k: 6510	n:440000
KS ci ratio: 2.850765e-01	ci left: 3.683869e-04	ci right 4.928914e-04	k: 188	n:440000
STK11   440000 perm   207 sec   (2122 perm/sec)   p_kst 4.272727e-04   p_cons 1.479545e-02   p_joint 4.727273e-04

Joint ci ratio: 2.792270e-01	ci left: 3.767208e-04	ci right 5.009702e-04	k: 196	n:450000
Cons ci ratio: 4.769537e-02	ci left: 1.443603e-02	ci right 1.514357e-02	k: 6654	n:450000
KS ci ratio: 2.821069e-01	ci left: 3.684573e-04	ci right 4.914577e-04	k: 192	n:450000
STK11   450000 perm   214 sec   (2104 perm/sec)   p_kst 4.266667e-04   p_cons 1.478667e-02   p_joint 4.355556e-04

Joint ci ratio: 2.843276e-01	ci left: 3.543884e-04	ci right 4.737907e-04	k: 189	n:460000
Cons ci ratio: 4.722305e-02	ci left: 1.441005e-02	ci right 1.510913e-02	k: 6788	n:460000
KS ci ratio: 2.799400e-01	ci left: 3.665095e-04	ci right 4.877541e-04	k: 195	n:460000
STK11   460000 perm   220 sec   (2086 perm/sec)   p_kst 4.239130e-04   p_cons 1.475652e-02   p_joint 4.108696e-04

Joint ci ratio: 2.843289e-01	ci left: 3.468480e-04	ci right 4.637103e-04	k: 189	n:470000
Cons ci ratio: 4.670973e-02	ci left: 1.441886e-02	ci right 1.511055e-02	k: 6938	n:470000
KS ci ratio: 2.764361e-01	ci left: 3.686077e-04	ci right 4.887547e-04	k: 200	n:470000
STK11   470000 perm   227 sec   (2068 perm/sec)   p_kst 4.255319e-04   p_cons 1.476170e-02   p_joint 4.021277e-04

Joint ci ratio: 2.945906e-01	ci left: 3.145034e-04	ci right 4.250074e-04	k: 176	n:480000
Cons ci ratio: 4.622603e-02	ci left: 1.441909e-02	ci right 1.510345e-02	k: 7084	n:480000
KS ci ratio: 2.723998e-01	ci left: 3.725685e-04	ci right 4.919301e-04	k: 206	n:480000
STK11   480000 perm   234 sec   (2049 perm/sec)   p_kst 4.291667e-04   p_cons 1.475833e-02   p_joint 3.666667e-04

Joint ci ratio: 2.913172e-01	ci left: 3.156485e-04	ci right 4.250951e-04	k: 180	n:490000
Cons ci ratio: 4.573460e-02	ci left: 1.443348e-02	ci right 1.511105e-02	k: 7237	n:490000
KS ci ratio: 2.691682e-01	ci left: 3.744765e-04	ci right 4.927858e-04	k: 211	n:490000
STK11   490000 perm   241 sec   (2032 perm/sec)   p_kst 4.306122e-04   p_cons 1.476939e-02   p_joint 3.673469e-04

Joint ci ratio: 2.889328e-01	ci left: 3.148989e-04	ci right 4.230287e-04	k: 183	n:500000
Cons ci ratio: 4.527716e-02	ci left: 1.443547e-02	ci right 1.510617e-02	k: 7384	n:500000
KS ci ratio: 2.654378e-01	ci left: 3.781830e-04	ci right 4.957321e-04	k: 217	n:500000
STK11   500000 perm   248 sec   (2015 perm/sec)   p_kst 4.340000e-04   p_cons 1.476800e-02   p_joint 3.660000e-04

Joint ci ratio: 2.873756e-01	ci left: 3.123625e-04	ci right 4.189383e-04	k: 185	n:510000
Cons ci ratio: 4.483319e-02	ci left: 1.443741e-02	ci right 1.510145e-02	k: 7531	n:510000
KS ci ratio: 2.648319e-01	ci left: 3.725980e-04	ci right 4.881029e-04	k: 218	n:510000
STK11   510000 perm   255 sec   (1998 perm/sec)   p_kst 4.274510e-04   p_cons 1.476667e-02   p_joint 3.627451e-04

Joint ci ratio: 2.843345e-01	ci left: 3.134964e-04	ci right 4.191240e-04	k: 189	n:520000
Cons ci ratio: 4.447851e-02	ci left: 1.438985e-02	ci right 1.504634e-02	k: 7652	n:520000
KS ci ratio: 2.630368e-01	ci left: 3.708202e-04	ci right 4.848665e-04	k: 221	n:520000
STK11   520000 perm   262 sec   (1982 perm/sec)   p_kst 4.250000e-04   p_cons 1.471538e-02   p_joint 3.634615e-04

Joint ci ratio: 2.821161e-01	ci left: 3.128398e-04	ci right 4.172774e-04	k: 192	n:530000
Cons ci ratio: 4.406313e-02	ci left: 1.438890e-02	ci right 1.503906e-02	k: 7797	n:530000
KS ci ratio: 2.601236e-01	ci left: 3.726390e-04	ci right 4.857691e-04	k: 226	n:530000
STK11   530000 perm   270 sec   (1965 perm/sec)   p_kst 4.264151e-04   p_cons 1.471132e-02   p_joint 3.622642e-04

Joint ci ratio: 2.799489e-01	ci left: 3.122105e-04	ci right 4.154962e-04	k: 195	n:540000
Cons ci ratio: 4.366476e-02	ci left: 1.438435e-02	ci right 1.502828e-02	k: 7940	n:540000
KS ci ratio: 2.573051e-01	ci left: 3.743972e-04	ci right 4.866317e-04	k: 231	n:540000
STK11   540000 perm   277 sec   (1949 perm/sec)   p_kst 4.277778e-04   p_cons 1.470370e-02   p_joint 3.611111e-04

Joint ci ratio: 2.771352e-01	ci left: 3.132988e-04	ci right 4.157210e-04	k: 199	n:550000
Cons ci ratio: 4.330964e-02	ci left: 1.435841e-02	ci right 1.499581e-02	k: 8071	n:550000
KS ci ratio: 2.545763e-01	ci left: 3.760978e-04	ci right 4.874566e-04	k: 236	n:550000
STK11   550000 perm   284 sec   (1933 perm/sec)   p_kst 4.290909e-04   p_cons 1.467455e-02   p_joint 3.618182e-04

Joint ci ratio: 2.757602e-01	ci left: 3.110280e-04	ci right 4.121159e-04	k: 201	n:560000
Cons ci ratio: 4.292058e-02	ci left: 1.436168e-02	ci right 1.499336e-02	k: 8218	n:560000
KS ci ratio: 2.529805e-01	ci left: 3.743982e-04	ci right 4.844493e-04	k: 239	n:560000
STK11   560000 perm   292 sec   (1918 perm/sec)   p_kst 4.267857e-04   p_cons 1.467500e-02   p_joint 3.589286e-04

Joint ci ratio: 2.750808e-01	ci left: 3.072045e-04	ci right 4.067612e-04	k: 202	n:570000
Cons ci ratio: 4.256248e-02	ci left: 1.435097e-02	ci right 1.497679e-02	k: 8357	n:570000
KS ci ratio: 2.519334e-01	ci left: 3.711165e-04	ci right 4.796806e-04	k: 241	n:570000
STK11   570000 perm   300 sec   (1902 perm/sec)   p_kst 4.228070e-04   p_cons 1.466140e-02   p_joint 3.543860e-04

Joint ci ratio: 2.730706e-01	ci left: 3.067248e-04	ci right 4.052751e-04	k: 205	n:580000
Cons ci ratio: 4.220815e-02	ci left: 1.434406e-02	ci right 1.496425e-02	k: 8498	n:580000
KS ci ratio: 2.493703e-01	ci left: 3.727972e-04	ci right 4.805713e-04	k: 246	n:580000
STK11   580000 perm   307 sec   (1887 perm/sec)   p_kst 4.241379e-04   p_cons 1.465172e-02   p_joint 3.534483e-04

Joint ci ratio: 2.704573e-01	ci left: 3.078439e-04	ci right 4.056464e-04	k: 209	n:590000
Cons ci ratio: 4.183796e-02	ci left: 1.435419e-02	ci right 1.496923e-02	k: 8649	n:590000
KS ci ratio: 2.473754e-01	ci left: 3.728363e-04	ci right 4.796268e-04	k: 250	n:590000
STK11   590000 perm   315 sec   (1872 perm/sec)   p_kst 4.237288e-04   p_cons 1.465932e-02   p_joint 3.542373e-04

Joint ci ratio: 2.737377e-01	ci left: 2.949480e-04	ci right 3.899856e-04	k: 204	n:600000
Cons ci ratio: 4.144867e-02	ci left: 1.438379e-02	ci right 1.499424e-02	k: 8812	n:600000
KS ci ratio: 2.459104e-01	ci left: 3.713133e-04	ci right 4.769415e-04	k: 253	n:600000
STK11   600000 perm   323 sec   (1858 perm/sec)   p_kst 4.216667e-04   p_cons 1.468667e-02   p_joint 3.400000e-04

Joint ci ratio: 2.828569e-01	ci left: 2.702875e-04	ci right 3.607987e-04	k: 191	n:610000
Cons ci ratio: 4.116091e-02	ci left: 1.434917e-02	ci right 1.495381e-02	k: 8936	n:610000
KS ci ratio: 2.435250e-01	ci left: 3.729203e-04	ci right 4.778211e-04	k: 258	n:610000
STK11   610000 perm   331 sec   (1844 perm/sec)   p_kst 4.229508e-04   p_cons 1.464918e-02   p_joint 3.131148e-04

Joint ci ratio: 2.813953e-01	ci left: 2.689256e-04	ci right 3.584329e-04	k: 193	n:620000
Cons ci ratio: 4.084018e-02	ci left: 1.434282e-02	ci right 1.494238e-02	k: 9077	n:620000
KS ci ratio: 2.407520e-01	ci left: 3.759959e-04	ci right 4.803776e-04	k: 264	n:620000
STK11   620000 perm   339 sec   (1830 perm/sec)   p_kst 4.258065e-04   p_cons 1.464032e-02   p_joint 3.112903e-04

Joint ci ratio: 2.799562e-01	ci left: 2.676081e-04	ci right 3.561410e-04	k: 195	n:630000
Cons ci ratio: 4.049565e-02	ci left: 1.435869e-02	ci right 1.495373e-02	k: 9232	n:630000
KS ci ratio: 2.398491e-01	ci left: 3.730111e-04	ci right 4.761180e-04	k: 266	n:630000
STK11   630000 perm   347 sec   (1816 perm/sec)   p_kst 4.222222e-04   p_cons 1.465397e-02   p_joint 3.095238e-04

Joint ci ratio: 2.778380e-01	ci left: 2.677864e-04	ci right 3.555907e-04	k: 198	n:640000
Cons ci ratio: 4.018576e-02	ci left: 1.435551e-02	ci right 1.494577e-02	k: 9375	n:640000
KS ci ratio: 2.380724e-01	ci left: 3.730586e-04	ci right 4.753022e-04	k: 270	n:640000
STK11   640000 perm   355 sec   (1801 perm/sec)   p_kst 4.218750e-04   p_cons 1.464844e-02   p_joint 3.093750e-04

Joint ci ratio: 2.771430e-01	ci left: 2.650980e-04	ci right 3.517654e-04	k: 199	n:650000
Cons ci ratio: 3.986588e-02	ci left: 1.436464e-02	ci right 1.495046e-02	k: 9526	n:650000
KS ci ratio: 2.346337e-01	ci left: 3.788983e-04	ci right 4.810248e-04	k: 278	n:650000
STK11   650000 perm   364 sec   (1787 perm/sec)   p_kst 4.276923e-04   p_cons 1.465538e-02   p_joint 3.061538e-04

Joint ci ratio: 2.757678e-01	ci left: 2.639016e-04	ci right 3.496755e-04	k: 201	n:660000
Cons ci ratio: 3.952038e-02	ci left: 1.439752e-02	ci right 1.497948e-02	k: 9693	n:660000
KS ci ratio: 2.337976e-01	ci left: 3.760099e-04	ci right 4.769445e-04	k: 280	n:660000
STK11   660000 perm   372 sec   (1774 perm/sec)   p_kst 4.242424e-04   p_cons 1.468636e-02   p_joint 3.045455e-04

Joint ci ratio: 2.737426e-01	ci left: 2.641319e-04	ci right 3.492418e-04	k: 204	n:670000
Cons ci ratio: 3.918774e-02	ci left: 1.442648e-02	ci right 1.500459e-02	k: 9858	n:670000
KS ci ratio: 2.309384e-01	ci left: 3.802375e-04	ci right 4.808806e-04	k: 287	n:670000
STK11   670000 perm   380 sec   (1761 perm/sec)   p_kst 4.283582e-04   p_cons 1.471343e-02   p_joint 3.044776e-04

Joint ci ratio: 2.724172e-01	ci left: 2.629874e-04	ci right 3.472480e-04	k: 206	n:680000
Cons ci ratio: 3.890869e-02	ci left: 1.442111e-02	ci right 1.499480e-02	k: 10000	n:680000
KS ci ratio: 2.301411e-01	ci left: 3.774170e-04	ci right 4.769197e-04	k: 289	n:680000
STK11   680000 perm   389 sec   (1748 perm/sec)   p_kst 4.250000e-04   p_cons 1.470588e-02   p_joint 3.029412e-04

Joint ci ratio: 2.717619e-01	ci left: 2.605264e-04	ci right 3.437634e-04	k: 207	n:690000
Cons ci ratio: 3.864713e-02	ci left: 1.440730e-02	ci right 1.497650e-02	k: 10136	n:690000
KS ci ratio: 2.285702e-01	ci left: 3.774112e-04	ci right 4.761374e-04	k: 293	n:690000
STK11   690000 perm   397 sec   (1736 perm/sec)   p_kst 4.246377e-04   p_cons 1.468986e-02   p_joint 3.000000e-04

Joint ci ratio: 2.711114e-01	ci left: 2.581359e-04	ci right 3.403781e-04	k: 208	n:700000
Cons ci ratio: 3.837560e-02	ci left: 1.440521e-02	ci right 1.497024e-02	k: 10280	n:700000
KS ci ratio: 2.281830e-01	ci left: 3.733664e-04	ci right 4.708457e-04	k: 294	n:700000
STK11   700000 perm   406 sec   (1723 perm/sec)   p_kst 4.200000e-04   p_cons 1.468571e-02   p_joint 2.971429e-04

Joint ci ratio: 2.274137e-01	ci left: 3.707638e-04	ci right 4.671916e-04	k: 296	n:710000
Cons ci ratio: 4.248110e-02	ci left: 1.159889e-02	ci right 1.210370e-02	k: 8413	n:710000
KS ci ratio: 2.247791e-01	ci left: 3.800648e-04	ci right 4.776079e-04	k: 303	n:710000
STK11   710000 perm   415 sec   (1711 perm/sec)   p_kst 4.267606e-04   p_cons 1.184930e-02   p_joint 4.169014e-04

Joint ci ratio: 2.301438e-01	ci left: 3.564489e-04	ci right 4.504248e-04	k: 289	n:720000
Cons ci ratio: 4.219885e-02	ci left: 1.159307e-02	ci right 1.209420e-02	k: 8526	n:720000
KS ci ratio: 2.229530e-01	ci left: 3.813412e-04	ci right 4.783076e-04	k: 308	n:720000
STK11   720000 perm   424 sec   (1698 perm/sec)   p_kst 4.277778e-04   p_cons 1.184167e-02   p_joint 4.013889e-04

Joint ci ratio: 2.293546e-01	ci left: 3.541481e-04	ci right 4.471518e-04	k: 291	n:730000
Cons ci ratio: 4.193197e-02	ci left: 1.158201e-02	ci right 1.207941e-02	k: 8635	n:730000
KS ci ratio: 2.225936e-01	ci left: 3.774107e-04	ci right 4.732017e-04	k: 309	n:730000
STK11   730000 perm   433 sec   (1686 perm/sec)   p_kst 4.232877e-04   p_cons 1.182877e-02   p_joint 3.986301e-04

Joint ci ratio: 2.321559e-01	ci left: 3.404493e-04	ci right 4.311043e-04	k: 284	n:740000
Cons ci ratio: 4.163397e-02	ci left: 1.159131e-02	ci right 1.208549e-02	k: 8759	n:740000
KS ci ratio: 2.218794e-01	ci left: 3.748628e-04	ci right 4.696601e-04	k: 311	n:740000
STK11   740000 perm   442 sec   (1673 perm/sec)   p_kst 4.202703e-04   p_cons 1.183649e-02   p_joint 3.837838e-04

Joint ci ratio: 2.313459e-01	ci left: 3.384218e-04	ci right 4.281775e-04	k: 286	n:750000
Cons ci ratio: 4.134695e-02	ci left: 1.159774e-02	ci right 1.208871e-02	k: 8881	n:750000
KS ci ratio: 2.208204e-01	ci left: 3.736428e-04	ci right 4.676194e-04	k: 314	n:750000
STK11   750000 perm   451 sec   (1662 perm/sec)   p_kst 4.186667e-04   p_cons 1.184133e-02   p_joint 3.813333e-04

Joint ci ratio: 2.305442e-01	ci left: 3.364482e-04	ci right 4.253272e-04	k: 288	n:760000
Cons ci ratio: 4.107501e-02	ci left: 1.159880e-02	ci right 1.208651e-02	k: 8999	n:760000
KS ci ratio: 2.194317e-01	ci left: 3.736994e-04	ci right 4.670194e-04	k: 318	n:760000
STK11   760000 perm   461 sec   (1650 perm/sec)   p_kst 4.184211e-04   p_cons 1.184079e-02   p_joint 3.789474e-04

Joint ci ratio: 2.407621e-01	ci left: 3.027485e-04	ci right 3.867996e-04	k: 264	n:770000
Cons ci ratio: 4.084693e-02	ci left: 1.157799e-02	ci right 1.206205e-02	k: 9100	n:770000
KS ci ratio: 2.180687e-01	ci left: 3.737564e-04	ci right 4.664332e-04	k: 322	n:770000
STK11   770000 perm   470 sec   (1639 perm/sec)   p_kst 4.181818e-04   p_cons 1.181818e-02   p_joint 3.428571e-04

Joint ci ratio: 2.394108e-01	ci left: 3.024819e-04	ci right 3.859177e-04	k: 267	n:780000
Cons ci ratio: 4.058468e-02	ci left: 1.157930e-02	ci right 1.206023e-02	k: 9218	n:780000
KS ci ratio: 2.177324e-01	ci left: 3.701767e-04	ci right 4.618053e-04	k: 323	n:780000
STK11   780000 perm   479 sec   (1628 perm/sec)   p_kst 4.141026e-04   p_cons 1.181795e-02   p_joint 3.423077e-04

Joint ci ratio: 2.426017e-01	ci left: 2.903271e-04	ci right 3.716382e-04	k: 260	n:790000
Cons ci ratio: 4.033616e-02	ci left: 1.157557e-02	ci right 1.205334e-02	k: 9332	n:790000
KS ci ratio: 2.167315e-01	ci left: 3.690817e-04	ci right 4.599635e-04	k: 326	n:790000
STK11   790000 perm   489 sec   (1617 perm/sec)   p_kst 4.126582e-04   p_cons 1.181266e-02   p_joint 3.291139e-04

Joint ci ratio: 2.416777e-01	ci left: 2.890463e-04	ci right 3.696442e-04	k: 262	n:800000
Cons ci ratio: 4.008142e-02	ci left: 1.157813e-02	ci right 1.205292e-02	k: 9451	n:800000
KS ci ratio: 2.150932e-01	ci left: 3.703803e-04	ci right 4.608014e-04	k: 331	n:800000
STK11   800000 perm   498 sec   (1605 perm/sec)   p_kst 4.137500e-04   p_cons 1.181375e-02   p_joint 3.275000e-04

Joint ci ratio: 2.398604e-01	ci left: 2.901182e-04	ci right 3.703163e-04	k: 266	n:810000
Cons ci ratio: 3.982302e-02	ci left: 1.158553e-02	ci right 1.205748e-02	k: 9574	n:810000
KS ci ratio: 2.144485e-01	ci left: 3.681440e-04	ci right 4.577143e-04	k: 333	n:810000
STK11   810000 perm   508 sec   (1594 perm/sec)   p_kst 4.111111e-04   p_cons 1.181975e-02   p_joint 3.283951e-04

Joint ci ratio: 2.514307e-01	ci left: 2.591119e-04	ci right 3.347356e-04	k: 242	n:820000
Cons ci ratio: 3.956131e-02	ci left: 1.159758e-02	ci right 1.206685e-02	k: 9701	n:820000
KS ci ratio: 2.128610e-01	ci left: 3.694257e-04	ci right 4.585557e-04	k: 338	n:820000
STK11   820000 perm   518 sec   (1583 perm/sec)   p_kst 4.121951e-04   p_cons 1.183049e-02   p_joint 2.951220e-04

Joint ci ratio: 2.498929e-01	ci left: 2.593775e-04	ci right 3.345437e-04	k: 245	n:830000
Cons ci ratio: 3.932291e-02	ci left: 1.159862e-02	ci right 1.206504e-02	k: 9819	n:830000
KS ci ratio: 2.113083e-01	ci left: 3.706790e-04	ci right 4.593745e-04	k: 343	n:830000
STK11   830000 perm   528 sec   (1573 perm/sec)   p_kst 4.132530e-04   p_cons 1.183012e-02   p_joint 2.951807e-04

Joint ci ratio: 2.488834e-01	ci left: 2.585218e-04	ci right 3.330905e-04	k: 247	n:840000
Cons ci ratio: 3.908478e-02	ci left: 1.160200e-02	ci right 1.206567e-02	k: 9939	n:840000
KS ci ratio: 2.106970e-01	ci left: 3.685212e-04	ci right 4.564124e-04	k: 345	n:840000
STK11   840000 perm   538 sec   (1562 perm/sec)   p_kst 4.107143e-04   p_cons 1.183214e-02   p_joint 2.940476e-04

Joint ci ratio: 2.821356e-01	ci left: 1.950631e-04	ci right 2.601874e-04	k: 192	n:850000
Cons ci ratio: 3.885094e-02	ci left: 1.160530e-02	ci right 1.206627e-02	k: 10059	n:850000
KS ci ratio: 2.122372e-01	ci left: 3.586147e-04	ci right 4.448497e-04	k: 340	n:850000
STK11   850000 perm   548 sec   (1552 perm/sec)   p_kst 4.000000e-04   p_cons 1.183412e-02   p_joint 2.258824e-04

Joint ci ratio: 2.785500e-01	ci left: 1.982002e-04	ci right 2.633835e-04	k: 197	n:860000
Cons ci ratio: 3.862508e-02	ci left: 1.160624e-02	ci right 1.206450e-02	k: 10177	n:860000
KS ci ratio: 2.103940e-01	ci left: 3.610523e-04	ci right 4.470223e-04	k: 346	n:860000
STK11   860000 perm   558 sec   (1542 perm/sec)   p_kst 4.023256e-04   p_cons 1.183372e-02   p_joint 2.290698e-04

Joint ci ratio: 2.771538e-01	ci left: 1.980607e-04	ci right 2.628148e-04	k: 199	n:870000
Cons ci ratio: 3.842389e-02	ci left: 1.159464e-02	ci right 1.205000e-02	k: 10284	n:870000
KS ci ratio: 2.088943e-01	ci left: 3.623477e-04	ci right 4.479325e-04	k: 351	n:870000
STK11   870000 perm   568 sec   (1531 perm/sec)   p_kst 4.034483e-04   p_cons 1.182069e-02   p_joint 2.287356e-04

Joint ci ratio: 2.744229e-01	ci left: 2.000412e-04	ci right 2.646872e-04	k: 203	n:880000
Cons ci ratio: 3.820907e-02	ci left: 1.159343e-02	ci right 1.204615e-02	k: 10400	n:880000
KS ci ratio: 2.077174e-01	ci left: 3.625385e-04	ci right 4.476246e-04	k: 355	n:880000
STK11   880000 perm   578 sec   (1522 perm/sec)   p_kst 4.034091e-04   p_cons 1.181818e-02   p_joint 2.306818e-04

Joint ci ratio: 2.730876e-01	ci left: 1.998865e-04	ci right 2.641142e-04	k: 205	n:890000
Cons ci ratio: 3.798502e-02	ci left: 1.160006e-02	ci right 1.205032e-02	k: 10523	n:890000
KS ci ratio: 2.057046e-01	ci left: 3.659232e-04	ci right 4.508668e-04	k: 362	n:890000
STK11   890000 perm   589 sec   (1511 perm/sec)   p_kst 4.067416e-04   p_cons 1.182360e-02   p_joint 2.303371e-04

Joint ci ratio: 2.698321e-01	ci left: 2.028431e-04	ci right 2.671123e-04	k: 210	n:900000
Cons ci ratio: 3.777385e-02	ci left: 1.160104e-02	ci right 1.204878e-02	k: 10641	n:900000
KS ci ratio: 2.032004e-01	ci left: 3.713455e-04	ci right 4.563682e-04	k: 371	n:900000
STK11   900000 perm   599 sec   (1502 perm/sec)   p_kst 4.122222e-04   p_cons 1.182333e-02   p_joint 2.333333e-04

Joint ci ratio: 2.666904e-01	ci left: 2.057391e-04	ci right 2.700401e-04	k: 215	n:910000
Cons ci ratio: 3.756263e-02	ci left: 1.160418e-02	ci right 1.204949e-02	k: 10761	n:910000
KS ci ratio: 2.015811e-01	ci left: 3.735241e-04	ci right 4.582802e-04	k: 377	n:910000
STK11   910000 perm   610 sec   (1492 perm/sec)   p_kst 4.142857e-04   p_cons 1.182527e-02   p_joint 2.362637e-04

Joint ci ratio: 2.648574e-01	ci left: 2.065465e-04	ci right 2.705825e-04	k: 218	n:920000
Cons ci ratio: 3.734796e-02	ci left: 1.161157e-02	ci right 1.205456e-02	k: 10885	n:920000
KS ci ratio: 2.010501e-01	ci left: 3.715284e-04	ci right 4.555823e-04	k: 379	n:920000
STK11   920000 perm   621 sec   (1483 perm/sec)   p_kst 4.119565e-04   p_cons 1.183152e-02   p_joint 2.369565e-04

Joint ci ratio: 2.648577e-01	ci left: 2.043255e-04	ci right 2.676730e-04	k: 218	n:930000
Cons ci ratio: 3.715231e-02	ci left: 1.160922e-02	ci right 1.204975e-02	k: 11000	n:930000
KS ci ratio: 2.005233e-01	ci left: 3.695758e-04	ci right 4.529422e-04	k: 381	n:930000
STK11   930000 perm   631 sec   (1473 perm/sec)   p_kst 4.096774e-04   p_cons 1.182796e-02   p_joint 2.344086e-04

Joint ci ratio: 2.648581e-01	ci left: 2.021518e-04	ci right 2.648255e-04	k: 218	n:940000
Cons ci ratio: 3.694120e-02	ci left: 1.161852e-02	ci right 1.205684e-02	k: 11126	n:940000
KS ci ratio: 1.994817e-01	ci left: 3.696864e-04	ci right 4.525918e-04	k: 385	n:940000
STK11   940000 perm   642 sec   (1464 perm/sec)   p_kst 4.095745e-04   p_cons 1.183617e-02   p_joint 2.319149e-04

Joint ci ratio: 2.642556e-01	ci left: 2.010067e-04	ci right 2.631602e-04	k: 219	n:950000
Cons ci ratio: 3.673696e-02	ci left: 1.162554e-02	ci right 1.206165e-02	k: 11250	n:950000
KS ci ratio: 1.989671e-01	ci left: 3.677952e-04	ci right 4.500378e-04	k: 387	n:950000
STK11   950000 perm   653 sec   (1455 perm/sec)   p_kst 4.073684e-04   p_cons 1.184211e-02   p_joint 2.305263e-04

Joint ci ratio: 2.624720e-01	ci left: 2.018316e-04	ci right 2.637497e-04	k: 222	n:960000
Cons ci ratio: 3.653119e-02	ci left: 1.163552e-02	ci right 1.206951e-02	k: 11377	n:960000
KS ci ratio: 1.974461e-01	ci left: 3.699039e-04	ci right 4.519097e-04	k: 393	n:960000
STK11   960000 perm   664 sec   (1446 perm/sec)   p_kst 4.093750e-04   p_cons 1.185104e-02   p_joint 2.312500e-04

Joint ci ratio: 2.673120e-01	ci left: 1.920509e-04	ci right 2.522371e-04	k: 214	n:970000
Cons ci ratio: 3.634003e-02	ci left: 1.163815e-02	ci right 1.206992e-02	k: 11497	n:970000
KS ci ratio: 1.964514e-01	ci left: 3.700108e-04	ci right 4.515776e-04	k: 397	n:970000
STK11   970000 perm   675 sec   (1437 perm/sec)   p_kst 4.092784e-04   p_cons 1.185258e-02   p_joint 2.206186e-04

Joint ci ratio: 2.691974e-01	ci left: 1.872357e-04	ci right 2.463967e-04	k: 211	n:980000
Cons ci ratio: 3.612825e-02	ci left: 1.165591e-02	ci right 1.208576e-02	k: 11632	n:980000
KS ci ratio: 1.942667e-01	ci left: 3.749698e-04	ci right 4.566018e-04	k: 406	n:980000
STK11   980000 perm   686 sec   (1428 perm/sec)   p_kst 4.142857e-04   p_cons 1.186939e-02   p_joint 2.153061e-04

Joint ci ratio: 2.691977e-01	ci left: 1.853444e-04	ci right 2.439079e-04	k: 211	n:990000
Cons ci ratio: 3.594796e-02	ci left: 1.165529e-02	ci right 1.208293e-02	k: 11749	n:990000
KS ci ratio: 1.935548e-01	ci left: 3.740654e-04	ci right 4.551669e-04	k: 409	n:990000
STK11   990000 perm   697 sec   (1420 perm/sec)   p_kst 4.131313e-04   p_cons 1.186768e-02   p_joint 2.131313e-04

Joint ci ratio: 2.685652e-01	ci left: 1.844236e-04	ci right 2.425361e-04	k: 212	n:1000000
Cons ci ratio: 3.576119e-02	ci left: 1.166063e-02	ci right 1.208620e-02	k: 11872	n:1000000
KS ci ratio: 1.930847e-01	ci left: 3.722279e-04	ci right 4.527120e-04	k: 411	n:1000000
STK11   1000000 perm   709 sec   (1411 perm/sec)   p_kst 4.110000e-04   p_cons 1.187200e-02   p_joint 2.120000e-04

Joint ci ratio: 2.648602e-01	ci left: 1.881411e-04	ci right 2.464715e-04	k: 218	n:1010000
Cons ci ratio: 3.557281e-02	ci left: 1.166882e-02	ci right 1.209240e-02	k: 11998	n:1010000
KS ci ratio: 1.914647e-01	ci left: 3.751396e-04	ci right 4.554935e-04	k: 418	n:1010000
STK11   1010000 perm   720 sec   (1403 perm/sec)   p_kst 4.138614e-04   p_cons 1.187921e-02   p_joint 2.158416e-04

Joint ci ratio: 2.642577e-01	ci left: 1.872119e-04	ci right 2.451004e-04	k: 219	n:1020000
Cons ci ratio: 3.540954e-02	ci left: 1.166228e-02	ci right 1.208364e-02	k: 12109	n:1020000
KS ci ratio: 1.905573e-01	ci left: 3.751958e-04	ci right 4.551368e-04	k: 422	n:1020000
STK11   1020000 perm   731 sec   (1395 perm/sec)   p_kst 4.137255e-04   p_cons 1.187157e-02   p_joint 2.147059e-04

Joint ci ratio: 2.630647e-01	ci left: 1.872078e-04	ci right 2.447906e-04	k: 221	n:1030000
Cons ci ratio: 3.519753e-02	ci left: 1.168955e-02	ci right 1.210932e-02	k: 12255	n:1030000
KS ci ratio: 1.892199e-01	ci left: 3.771015e-04	ci right 4.568198e-04	k: 428	n:1030000
STK11   1030000 perm   743 sec   (1386 perm/sec)   p_kst 4.155340e-04   p_cons 1.189806e-02   p_joint 2.145631e-04

Joint ci ratio: 2.624743e-01	ci left: 1.863059e-04	ci right 2.434616e-04	k: 222	n:1040000
Cons ci ratio: 3.505370e-02	ci left: 1.167341e-02	ci right 1.209085e-02	k: 12356	n:1040000
KS ci ratio: 1.885618e-01	ci left: 3.762237e-04	ci right 4.554482e-04	k: 431	n:1040000
STK11   1040000 perm   755 sec   (1378 perm/sec)   p_kst 4.144231e-04   p_cons 1.188077e-02   p_joint 2.134615e-04

Joint ci ratio: 2.601513e-01	ci left: 1.880916e-04	ci right 2.452014e-04	k: 226	n:1050000
Cons ci ratio: 3.488895e-02	ci left: 1.167269e-02	ci right 1.208810e-02	k: 12473	n:1050000
KS ci ratio: 1.872657e-01	ci left: 3.780861e-04	ci right 4.570933e-04	k: 437	n:1050000
STK11   1050000 perm   767 sec   (1370 perm/sec)   p_kst 4.161905e-04   p_cons 1.187905e-02   p_joint 2.152381e-04

Joint ci ratio: 1.997453e-01	ci left: 3.269381e-04	ci right 4.003655e-04	k: 384	n:1060000
Cons ci ratio: 3.472092e-02	ci left: 1.167573e-02	ci right 1.208921e-02	k: 12594	n:1060000
KS ci ratio: 1.864164e-01	ci left: 3.781164e-04	ci right 4.567310e-04	k: 441	n:1060000
STK11   1060000 perm   779 sec   (1362 perm/sec)   p_kst 4.160377e-04   p_cons 1.188113e-02   p_joint 3.622642e-04

Joint ci ratio: 2.062809e-01	ci left: 3.025922e-04	ci right 3.730560e-04	k: 360	n:1070000
Cons ci ratio: 3.455392e-02	ci left: 1.167964e-02	ci right 1.209123e-02	k: 12716	n:1070000
KS ci ratio: 1.859963e-01	ci left: 3.763646e-04	ci right 4.544187e-04	k: 443	n:1070000
STK11   1070000 perm   790 sec   (1354 perm/sec)   p_kst 4.140187e-04   p_cons 1.188411e-02   p_joint 3.364486e-04

Joint ci ratio: 2.059960e-01	ci left: 3.006685e-04	ci right 3.705755e-04	k: 361	n:1080000
Cons ci ratio: 3.440965e-02	ci left: 1.166972e-02	ci right 1.207921e-02	k: 12823	n:1080000
KS ci ratio: 1.853712e-01	ci left: 3.755284e-04	ci right 4.531179e-04	k: 446	n:1080000
STK11   1080000 perm   802 sec   (1346 perm/sec)   p_kst 4.129630e-04   p_cons 1.187315e-02   p_joint 3.342593e-04

Joint ci ratio: 2.054294e-01	ci left: 2.996504e-04	ci right 3.691050e-04	k: 363	n:1090000
Cons ci ratio: 3.423638e-02	ci left: 1.168090e-02	ci right 1.208868e-02	k: 12953	n:1090000
KS ci ratio: 1.843430e-01	ci left: 3.764581e-04	ci right 4.537600e-04	k: 451	n:1090000
STK11   1090000 perm   815 sec   (1338 perm/sec)   p_kst 4.137615e-04   p_cons 1.188349e-02   p_joint 3.330275e-04

Joint ci ratio: 2.043098e-01	ci left: 3.003762e-04	ci right 3.695721e-04	k: 367	n:1100000
Cons ci ratio: 3.411455e-02	ci left: 1.165853e-02	ci right 1.206405e-02	k: 13046	n:1100000
KS ci ratio: 1.835327e-01	ci left: 3.765046e-04	ci right 4.534385e-04	k: 455	n:1100000
STK11   1100000 perm   827 sec   (1331 perm/sec)   p_kst 4.136364e-04   p_cons 1.186000e-02   p_joint 3.336364e-04

Joint ci ratio: 2.037570e-01	ci left: 2.993798e-04	ci right 3.681364e-04	k: 369	n:1110000
Cons ci ratio: 3.397177e-02	ci left: 1.165175e-02	ci right 1.205531e-02	k: 13156	n:1110000
KS ci ratio: 1.829320e-01	ci left: 3.756914e-04	ci right 4.521801e-04	k: 458	n:1110000
STK11   1110000 perm   839 sec   (1323 perm/sec)   p_kst 4.126126e-04   p_cons 1.185225e-02   p_joint 3.324324e-04

Joint ci ratio: 2.034825e-01	ci left: 2.975541e-04	ci right 3.657878e-04	k: 370	n:1120000
Cons ci ratio: 3.382175e-02	ci left: 1.165130e-02	ci right 1.205302e-02	k: 13273	n:1120000
KS ci ratio: 1.825349e-01	ci left: 3.740410e-04	ci right 4.500101e-04	k: 460	n:1120000
STK11   1120000 perm   851 sec   (1316 perm/sec)   p_kst 4.107143e-04   p_cons 1.185089e-02   p_joint 3.303571e-04

Joint ci ratio: 2.029363e-01	ci left: 2.966007e-04	ci right 3.644106e-04	k: 372	n:1130000
Cons ci ratio: 3.365970e-02	ci left: 1.166051e-02	ci right 1.206058e-02	k: 13401	n:1130000
KS ci ratio: 1.819440e-01	ci left: 3.732647e-04	ci right 4.488036e-04	k: 463	n:1130000
STK11   1130000 perm   864 sec   (1308 perm/sec)   p_kst 4.097345e-04   p_cons 1.185929e-02   p_joint 3.292035e-04

Joint ci ratio: 2.015895e-01	ci left: 2.981628e-04	ci right 3.658218e-04	k: 377	n:1140000
Cons ci ratio: 3.352129e-02	ci left: 1.165477e-02	ci right 1.205298e-02	k: 13512	n:1140000
KS ci ratio: 1.815533e-01	ci left: 3.716650e-04	ci right 4.467008e-04	k: 465	n:1140000
STK11   1140000 perm   876 sec   (1301 perm/sec)   p_kst 4.078947e-04   p_cons 1.185263e-02   p_joint 3.307018e-04

Joint ci ratio: 2.010584e-01	ci left: 2.972215e-04	ci right 3.644675e-04	k: 379	n:1150000
Cons ci ratio: 3.336598e-02	ci left: 1.166208e-02	ci right 1.205865e-02	k: 13638	n:1150000
KS ci ratio: 1.805870e-01	ci left: 3.725839e-04	ci right 4.473612e-04	k: 470	n:1150000
STK11   1150000 perm   889 sec   (1294 perm/sec)   p_kst 4.086957e-04   p_cons 1.185913e-02   p_joint 3.295652e-04

Joint ci ratio: 1.997485e-01	ci left: 2.987534e-04	ci right 3.658518e-04	k: 384	n:1160000
Cons ci ratio: 3.322014e-02	ci left: 1.166413e-02	ci right 1.205900e-02	k: 13758	n:1160000
KS ci ratio: 1.800147e-01	ci left: 3.718414e-04	ci right 4.462074e-04	k: 473	n:1160000
STK11   1160000 perm   901 sec   (1287 perm/sec)   p_kst 4.077586e-04   p_cons 1.186034e-02   p_joint 3.310345e-04

Joint ci ratio: 1.994897e-01	ci left: 2.970119e-04	ci right 3.636223e-04	k: 385	n:1170000
Cons ci ratio: 3.308464e-02	ci left: 1.166022e-02	ci right 1.205332e-02	k: 13871	n:1170000
KS ci ratio: 1.794478e-01	ci left: 3.711120e-04	ci right 4.450730e-04	k: 476	n:1170000
STK11   1170000 perm   914 sec   (1280 perm/sec)   p_kst 4.068376e-04   p_cons 1.185556e-02   p_joint 3.290598e-04

Joint ci ratio: 1.989750e-01	ci left: 2.961052e-04	ci right 3.623201e-04	k: 387	n:1180000
Cons ci ratio: 3.293529e-02	ci left: 1.166730e-02	ci right 1.205883e-02	k: 13997	n:1180000
KS ci ratio: 1.790729e-01	ci left: 3.695859e-04	ci right 4.430721e-04	k: 478	n:1180000
STK11   1180000 perm   927 sec   (1273 perm/sec)   p_kst 4.050847e-04   p_cons 1.186186e-02   p_joint 3.279661e-04

Joint ci ratio: 1.977051e-01	ci left: 2.976099e-04	ci right 3.636854e-04	k: 392	n:1190000
Cons ci ratio: 3.279383e-02	ci left: 1.167010e-02	ci right 1.206001e-02	k: 14118	n:1190000
KS ci ratio: 1.779617e-01	ci left: 3.712969e-04	ci right 4.446159e-04	k: 484	n:1190000
STK11   1190000 perm   940 sec   (1266 perm/sec)   p_kst 4.067227e-04   p_cons 1.186387e-02   p_joint 3.294118e-04

Joint ci ratio: 2.000096e-01	ci left: 2.880031e-04	ci right 3.527820e-04	k: 383	n:1200000
Cons ci ratio: 3.264953e-02	ci left: 1.167616e-02	ci right 1.206453e-02	k: 14243	n:1200000
KS ci ratio: 1.772323e-01	ci left: 3.713879e-04	ci right 4.443921e-04	k: 488	n:1200000
STK11   1200000 perm   953 sec   (1260 perm/sec)   p_kst 4.066667e-04   p_cons 1.186917e-02   p_joint 3.191667e-04

Joint ci ratio: 2.018587e-01	ci left: 2.801287e-04	ci right 3.437908e-04	k: 376	n:1210000
Cons ci ratio: 3.252201e-02	ci left: 1.167147e-02	ci right 1.205814e-02	k: 14355	n:1210000
KS ci ratio: 1.765119e-01	ci left: 3.714780e-04	ci right 4.441714e-04	k: 492	n:1210000
STK11   1210000 perm   966 sec   (1253 perm/sec)   p_kst 4.066116e-04   p_cons 1.186364e-02   p_joint 3.107438e-04

Joint ci ratio: 2.010604e-01	ci left: 2.801676e-04	ci right 3.435557e-04	k: 379	n:1220000
Cons ci ratio: 3.239824e-02	ci left: 1.166524e-02	ci right 1.205020e-02	k: 14465	n:1220000
KS ci ratio: 1.759773e-01	ci left: 3.707836e-04	ci right 4.430981e-04	k: 495	n:1220000
STK11   1220000 perm   979 sec   (1246 perm/sec)   p_kst 4.057377e-04   p_cons 1.185656e-02   p_joint 3.106557e-04

Joint ci ratio: 2.002714e-01	ci left: 2.802063e-04	ci right 3.433240e-04	k: 382	n:1230000
Cons ci ratio: 3.226356e-02	ci left: 1.166798e-02	ci right 1.205140e-02	k: 14586	n:1230000
KS ci ratio: 1.750969e-01	ci left: 3.716556e-04	ci right 4.437391e-04	k: 500	n:1230000
STK11   1230000 perm   993 sec   (1239 perm/sec)   p_kst 4.065041e-04   p_cons 1.185854e-02   p_joint 3.105691e-04

Joint ci ratio: 1.989766e-01	ci left: 2.817773e-04	ci right 3.447888e-04	k: 387	n:1240000
Cons ci ratio: 3.213165e-02	ci left: 1.166988e-02	ci right 1.205176e-02	k: 14706	n:1240000
KS ci ratio: 1.742296e-01	ci left: 3.725144e-04	ci right 4.443689e-04	k: 505	n:1240000
STK11   1240000 perm   1006 sec   (1232 perm/sec)   p_kst 4.072581e-04   p_cons 1.185968e-02   p_joint 3.120968e-04

Joint ci ratio: 1.989769e-01	ci left: 2.795230e-04	ci right 3.420305e-04	k: 387	n:1250000
Cons ci ratio: 3.201664e-02	ci left: 1.166064e-02	ci right 1.204083e-02	k: 14812	n:1250000
KS ci ratio: 1.738865e-01	ci left: 3.710645e-04	ci right 4.424836e-04	k: 507	n:1250000
STK11   1250000 perm   1020 sec   (1226 perm/sec)   p_kst 4.056000e-04   p_cons 1.184960e-02   p_joint 3.096000e-04

Joint ci ratio: 1.974558e-01	ci left: 2.818302e-04	ci right 3.443139e-04	k: 393	n:1260000
Cons ci ratio: 3.189420e-02	ci left: 1.165784e-02	ci right 1.203647e-02	k: 14926	n:1260000
KS ci ratio: 1.730369e-01	ci left: 3.719155e-04	ci right 4.431122e-04	k: 512	n:1260000
STK11   1260000 perm   1033 sec   (1220 perm/sec)   p_kst 4.063492e-04   p_cons 1.184603e-02   p_joint 3.119048e-04

Joint ci ratio: 1.964610e-01	ci left: 2.826054e-04	ci right 3.449074e-04	k: 397	n:1270000
Cons ci ratio: 3.177423e-02	ci left: 1.165432e-02	ci right 1.203138e-02	k: 15039	n:1270000
KS ci ratio: 1.723662e-01	ci left: 3.720005e-04	ci right 4.429087e-04	k: 516	n:1270000
STK11   1270000 perm   1047 sec   (1213 perm/sec)   p_kst 4.062992e-04   p_cons 1.184173e-02   p_joint 3.125984e-04

Joint ci ratio: 1.949964e-01	ci left: 2.848554e-04	ci right 3.471297e-04	k: 403	n:1280000
Cons ci ratio: 3.166301e-02	ci left: 1.164542e-02	ci right 1.202085e-02	k: 15145	n:1280000
KS ci ratio: 1.715387e-01	ci left: 3.728324e-04	ci right 4.435227e-04	k: 521	n:1280000
STK11   1280000 perm   1061 sec   (1207 perm/sec)   p_kst 4.070313e-04   p_cons 1.183203e-02   p_joint 3.148438e-04

Joint ci ratio: 1.947557e-01	ci left: 2.833845e-04	ci right 3.452518e-04	k: 404	n:1290000
Cons ci ratio: 3.152994e-02	ci left: 1.165359e-02	ci right 1.202768e-02	k: 15273	n:1290000
KS ci ratio: 1.708852e-01	ci left: 3.729102e-04	ci right 4.433181e-04	k: 525	n:1290000
STK11   1290000 perm   1075 sec   (1201 perm/sec)   p_kst 4.069767e-04   p_cons 1.183953e-02   p_joint 3.131783e-04

Joint ci ratio: 1.947559e-01	ci left: 2.812046e-04	ci right 3.425961e-04	k: 404	n:1300000
Cons ci ratio: 3.139337e-02	ci left: 1.166545e-02	ci right 1.203827e-02	k: 15406	n:1300000
KS ci ratio: 1.705614e-01	ci left: 3.715143e-04	ci right 4.415121e-04	k: 527	n:1300000
STK11   1300000 perm   1088 sec   (1194 perm/sec)   p_kst 4.053846e-04   p_cons 1.185077e-02   p_joint 3.107692e-04

Joint ci ratio: 1.947562e-01	ci left: 2.790580e-04	ci right 3.399809e-04	k: 404	n:1310000
Cons ci ratio: 3.127486e-02	ci left: 1.166502e-02	ci right 1.203638e-02	k: 15523	n:1310000
KS ci ratio: 1.700790e-01	ci left: 3.708708e-04	ci right 4.405294e-04	k: 530	n:1310000
STK11   1310000 perm   1103 sec   (1188 perm/sec)   p_kst 4.045802e-04   p_cons 1.184962e-02   p_joint 3.083969e-04

Joint ci ratio: 1.947564e-01	ci left: 2.769439e-04	ci right 3.374053e-04	k: 404	n:1320000
Cons ci ratio: 3.114862e-02	ci left: 1.167135e-02	ci right 1.204140e-02	k: 15649	n:1320000
KS ci ratio: 1.696006e-01	ci left: 3.702373e-04	ci right 4.395613e-04	k: 533	n:1320000
STK11   1320000 perm   1117 sec   (1182 perm/sec)   p_kst 4.037879e-04   p_cons 1.185530e-02   p_joint 3.060606e-04

Joint ci ratio: 1.940391e-01	ci left: 2.770075e-04	ci right 3.372337e-04	k: 407	n:1330000
Cons ci ratio: 3.103883e-02	ci left: 1.166641e-02	ci right 1.203497e-02	k: 15760	n:1330000
KS ci ratio: 1.689690e-01	ci left: 3.703336e-04	ci right 4.393911e-04	k: 537	n:1330000
STK11   1330000 perm   1131 sec   (1176 perm/sec)   p_kst 4.037594e-04   p_cons 1.184962e-02   p_joint 3.060150e-04

Joint ci ratio: 1.984680e-01	ci left: 2.621671e-04	ci right 3.206253e-04	k: 389	n:1340000
Cons ci ratio: 3.092133e-02	ci left: 1.166821e-02	ci right 1.203540e-02	k: 15880	n:1340000
KS ci ratio: 1.683443e-01	ci left: 3.704290e-04	ci right 4.392231e-04	k: 541	n:1340000
STK11   1340000 perm   1145 sec   (1170 perm/sec)   p_kst 4.037313e-04   p_cons 1.185075e-02   p_joint 2.902985e-04

Joint ci ratio: 1.979611e-01	ci left: 2.616331e-04	ci right 3.198053e-04	k: 391	n:1350000
Cons ci ratio: 3.078082e-02	ci left: 1.168836e-02	ci right 1.205448e-02	k: 16025	n:1350000
KS ci ratio: 1.678804e-01	ci left: 3.698138e-04	ci right 4.382852e-04	k: 544	n:1350000
STK11   1350000 perm   1159 sec   (1165 perm/sec)   p_kst 4.029630e-04   p_cons 1.187037e-02   p_joint 2.896296e-04

Joint ci ratio: 1.969587e-01	ci left: 2.625051e-04	ci right 3.205401e-04	k: 395	n:1360000
Cons ci ratio: 3.066428e-02	ci left: 1.169143e-02	ci right 1.205624e-02	k: 16147	n:1360000
KS ci ratio: 1.671155e-01	ci left: 3.706170e-04	ci right 4.388930e-04	k: 549	n:1360000
STK11   1360000 perm   1174 sec   (1159 perm/sec)   p_kst 4.036765e-04   p_cons 1.187279e-02   p_joint 2.904412e-04

Joint ci ratio: 1.954831e-01	ci left: 2.647535e-04	ci right 3.227948e-04	k: 401	n:1370000
Cons ci ratio: 3.054811e-02	ci left: 1.169518e-02	ci right 1.205871e-02	k: 16270	n:1370000
KS ci ratio: 1.660619e-01	ci left: 3.728083e-04	ci right 4.410116e-04	k: 556	n:1370000
STK11   1370000 perm   1188 sec   (1153 perm/sec)   p_kst 4.058394e-04   p_cons 1.187591e-02   p_joint 2.927007e-04

Joint ci ratio: 1.947577e-01	ci left: 2.649027e-04	ci right 3.227357e-04	k: 404	n:1380000
Cons ci ratio: 3.044171e-02	ci left: 1.169241e-02	ci right 1.205457e-02	k: 16384	n:1380000
KS ci ratio: 1.654688e-01	ci left: 3.728850e-04	ci right 4.408346e-04	k: 560	n:1380000
STK11   1380000 perm   1203 sec   (1147 perm/sec)   p_kst 4.057971e-04   p_cons 1.187246e-02   p_joint 2.927536e-04

Joint ci ratio: 1.940404e-01	ci left: 2.650501e-04	ci right 3.226771e-04	k: 407	n:1390000
Cons ci ratio: 3.033455e-02	ci left: 1.169112e-02	ci right 1.205193e-02	k: 16500	n:1390000
KS ci ratio: 1.645909e-01	ci left: 3.743407e-04	ci right 4.421577e-04	k: 566	n:1390000
STK11   1390000 perm   1218 sec   (1142 perm/sec)   p_kst 4.071942e-04   p_cons 1.187050e-02   p_joint 2.928058e-04

Joint ci ratio: 1.933309e-01	ci left: 2.651959e-04	ci right 3.226189e-04	k: 410	n:1400000
Cons ci ratio: 3.023772e-02	ci left: 1.168275e-02	ci right 1.204213e-02	k: 16606	n:1400000
KS ci ratio: 1.640134e-01	ci left: 3.744065e-04	ci right 4.419740e-04	k: 570	n:1400000
STK11   1400000 perm   1232 sec   (1136 perm/sec)   p_kst 4.071429e-04   p_cons 1.186143e-02   p_joint 2.928571e-04

Joint ci ratio: 1.926291e-01	ci left: 2.653399e-04	ci right 3.225611e-04	k: 413	n:1410000
Cons ci ratio: 3.013543e-02	ci left: 1.167943e-02	ci right 1.203747e-02	k: 16719	n:1410000
KS ci ratio: 1.632999e-01	ci left: 3.751520e-04	ci right 4.425306e-04	k: 575	n:1410000
STK11   1410000 perm   1247 sec   (1131 perm/sec)   p_kst 4.078014e-04   p_cons 1.185745e-02   p_joint 2.929078e-04

Joint ci ratio: 1.914762e-01	ci left: 2.668232e-04	ci right 3.239797e-04	k: 418	n:1420000
Cons ci ratio: 3.002695e-02	ci left: 1.168175e-02	ci right 1.203856e-02	k: 16840	n:1420000
KS ci ratio: 1.628764e-01	ci left: 3.745366e-04	ci right 4.416130e-04	k: 578	n:1420000
STK11   1420000 perm   1262 sec   (1125 perm/sec)   p_kst 4.070423e-04   p_cons 1.185915e-02   p_joint 2.943662e-04

Joint ci ratio: 1.901196e-01	ci left: 2.689527e-04	ci right 3.261101e-04	k: 424	n:1430000
Cons ci ratio: 2.993303e-02	ci left: 1.167363e-02	ci right 1.202905e-02	k: 16946	n:1430000
KS ci ratio: 1.621776e-01	ci left: 3.752717e-04	ci right 4.421634e-04	k: 583	n:1430000
STK11   1430000 perm   1277 sec   (1120 perm/sec)   p_kst 4.076923e-04   p_cons 1.185035e-02   p_joint 2.965035e-04

Joint ci ratio: 1.892311e-01	ci left: 2.697309e-04	ci right 3.267550e-04	k: 428	n:1440000
Cons ci ratio: 2.981699e-02	ci left: 1.168354e-02	ci right 1.203787e-02	k: 17078	n:1440000
KS ci ratio: 1.616250e-01	ci left: 3.753309e-04	ci right 4.419831e-04	k: 587	n:1440000
STK11   1440000 perm   1292 sec   (1114 perm/sec)   p_kst 4.076389e-04   p_cons 1.185972e-02   p_joint 2.972222e-04

Joint ci ratio: 1.885729e-01	ci left: 2.698418e-04	ci right 3.266682e-04	k: 431	n:1450000
Cons ci ratio: 2.970666e-02	ci left: 1.168990e-02	ci right 1.204308e-02	k: 17205	n:1450000
KS ci ratio: 1.613510e-01	ci left: 3.740660e-04	ci right 4.403699e-04	k: 589	n:1450000
STK11   1450000 perm   1307 sec   (1109 perm/sec)   p_kst 4.062069e-04   p_cons 1.186552e-02   p_joint 2.972414e-04

Joint ci ratio: 1.896743e-01	ci left: 2.647310e-04	ci right 3.208442e-04	k: 426	n:1460000
Cons ci ratio: 2.961917e-02	ci left: 1.167918e-02	ci right 1.203098e-02	k: 17307	n:1460000
KS ci ratio: 1.608068e-01	ci left: 3.741332e-04	ci right 4.402038e-04	k: 593	n:1460000
STK11   1460000 perm   1323 sec   (1104 perm/sec)   p_kst 4.061644e-04   p_cons 1.185411e-02   p_joint 2.917808e-04

Joint ci ratio: 1.921666e-01	ci left: 2.558046e-04	ci right 3.108215e-04	k: 415	n:1470000
Cons ci ratio: 2.950502e-02	ci left: 1.169021e-02	ci right 1.204097e-02	k: 17441	n:1470000
KS ci ratio: 1.608070e-01	ci left: 3.715880e-04	ci right 4.372092e-04	k: 593	n:1470000
STK11   1470000 perm   1338 sec   (1099 perm/sec)   p_kst 4.034014e-04   p_cons 1.186463e-02   p_joint 2.823129e-04

Joint ci ratio: 1.905696e-01	ci left: 2.585794e-04	ci right 3.136774e-04	k: 422	n:1480000
Cons ci ratio: 2.939387e-02	ci left: 1.169976e-02	ci right 1.204945e-02	k: 17573	n:1480000
KS ci ratio: 1.597347e-01	ci left: 3.742659e-04	ci right 4.398771e-04	k: 601	n:1480000
STK11   1480000 perm   1353 sec   (1094 perm/sec)   p_kst 4.060811e-04   p_cons 1.187365e-02   p_joint 2.851351e-04

Joint ci ratio: 1.898974e-01	ci left: 2.587615e-04	ci right 3.136814e-04	k: 425	n:1490000
Cons ci ratio: 2.929904e-02	ci left: 1.169718e-02	ci right 1.204566e-02	k: 17687	n:1490000
KS ci ratio: 1.589445e-01	ci left: 3.756204e-04	ci right 4.411121e-04	k: 607	n:1490000
STK11   1490000 perm   1369 sec   (1089 perm/sec)   p_kst 4.073826e-04   p_cons 1.187047e-02   p_joint 2.852349e-04

Joint ci ratio: 1.654715e-01	ci left: 3.430538e-04	ci right 4.055684e-04	k: 560	n:1500000
Cons ci ratio: 2.919599e-02	ci left: 1.170193e-02	ci right 1.204929e-02	k: 17812	n:1500000
KS ci ratio: 1.582949e-01	ci left: 3.763173e-04	ci right 4.416369e-04	k: 612	n:1500000
STK11   1500000 perm   1384 sec   (1084 perm/sec)   p_kst 4.080000e-04   p_cons 1.187467e-02   p_joint 3.733333e-04

Joint ci ratio: 1.651774e-01	ci left: 3.420516e-04	ci right 4.042618e-04	k: 562	n:1510000
Cons ci ratio: 2.910060e-02	ci left: 1.170135e-02	ci right 1.204755e-02	k: 17929	n:1510000
KS ci ratio: 1.576532e-01	ci left: 3.770055e-04	ci right 4.421542e-04	k: 617	n:1510000
STK11   1510000 perm   1400 sec   (1079 perm/sec)   p_kst 4.086093e-04   p_cons 1.187351e-02   p_joint 3.721854e-04

Joint ci ratio: 1.650311e-01	ci left: 3.404320e-04	ci right 4.022872e-04	k: 563	n:1520000
Cons ci ratio: 2.899963e-02	ci left: 1.170601e-02	ci right 1.205112e-02	k: 18054	n:1520000
KS ci ratio: 1.575260e-01	ci left: 3.751571e-04	ci right 4.399292e-04	k: 618	n:1520000
STK11   1520000 perm   1415 sec   (1074 perm/sec)   p_kst 4.065789e-04   p_cons 1.187763e-02   p_joint 3.703947e-04

Joint ci ratio: 1.644490e-01	ci left: 3.407135e-04	ci right 4.023800e-04	k: 567	n:1530000
Cons ci ratio: 2.890533e-02	ci left: 1.170606e-02	ci right 1.205004e-02	k: 18172	n:1530000
KS ci ratio: 1.572722e-01	ci left: 3.739608e-04	ci right 4.384125e-04	k: 620	n:1530000
STK11   1530000 perm   1431 sec   (1069 perm/sec)   p_kst 4.052288e-04   p_cons 1.187712e-02   p_joint 3.705882e-04

Joint ci ratio: 1.641603e-01	ci left: 3.397464e-04	ci right 4.011192e-04	k: 569	n:1540000
Cons ci ratio: 2.880876e-02	ci left: 1.170870e-02	ci right 1.205158e-02	k: 18294	n:1540000
KS ci ratio: 1.570197e-01	ci left: 3.727801e-04	ci right 4.369154e-04	k: 622	n:1540000
STK11   1540000 perm   1447 sec   (1064 perm/sec)   p_kst 4.038961e-04   p_cons 1.187922e-02   p_joint 3.694805e-04

Joint ci ratio: 1.635873e-01	ci left: 3.400293e-04	ci right 4.012177e-04	k: 573	n:1550000
Cons ci ratio: 2.871079e-02	ci left: 1.171323e-02	ci right 1.205505e-02	k: 18419	n:1550000
KS ci ratio: 1.563933e-01	ci left: 3.734744e-04	ci right 4.374488e-04	k: 627	n:1550000
STK11   1550000 perm   1463 sec   (1060 perm/sec)   p_kst 4.045161e-04   p_cons 1.188323e-02   p_joint 3.696774e-04

Joint ci ratio: 1.665152e-01	ci left: 3.255584e-04	ci right 3.852965e-04	k: 553	n:1560000
Cons ci ratio: 2.862162e-02	ci left: 1.171133e-02	ci right 1.205202e-02	k: 18534	n:1560000
KS ci ratio: 1.560211e-01	ci left: 3.729282e-04	ci right 4.366428e-04	k: 630	n:1560000
STK11   1560000 perm   1479 sec   (1055 perm/sec)   p_kst 4.038462e-04   p_cons 1.188077e-02   p_joint 3.544872e-04

Joint ci ratio: 1.660662e-01	ci left: 3.253161e-04	ci right 3.848327e-04	k: 556	n:1570000
Cons ci ratio: 2.853172e-02	ci left: 1.171073e-02	ci right 1.205031e-02	k: 18651	n:1570000
KS ci ratio: 1.551627e-01	ci left: 3.748379e-04	ci right 4.384936e-04	k: 637	n:1570000
STK11   1570000 perm   1495 sec   (1050 perm/sec)   p_kst 4.057325e-04   p_cons 1.187962e-02   p_joint 3.541401e-04

Joint ci ratio: 1.669684e-01	ci left: 3.196178e-04	ci right 3.784415e-04	k: 550	n:1580000
Cons ci ratio: 2.844574e-02	ci left: 1.170762e-02	ci right 1.204608e-02	k: 18764	n:1580000
KS ci ratio: 1.550414e-01	ci left: 3.730738e-04	ci right 4.363759e-04	k: 638	n:1580000
STK11   1580000 perm   1511 sec   (1046 perm/sec)   p_kst 4.037975e-04   p_cons 1.187595e-02   p_joint 3.481013e-04

Joint ci ratio: 1.665158e-01	ci left: 3.194157e-04	ci right 3.780269e-04	k: 553	n:1590000
Cons ci ratio: 2.835521e-02	ci left: 1.170892e-02	ci right 1.204632e-02	k: 18884	n:1590000
KS ci ratio: 1.547994e-01	ci left: 3.719365e-04	ci right 4.349380e-04	k: 640	n:1590000
STK11   1590000 perm   1527 sec   (1041 perm/sec)   p_kst 4.025157e-04   p_cons 1.187673e-02   p_joint 3.477987e-04

Joint ci ratio: 1.663658e-01	ci left: 3.180183e-04	ci right 3.763152e-04	k: 554	n:1600000
Cons ci ratio: 2.826780e-02	ci left: 1.170835e-02	ci right 1.204467e-02	k: 19001	n:1600000
KS ci ratio: 1.541992e-01	ci left: 3.726161e-04	ci right 4.354653e-04	k: 645	n:1600000
STK11   1600000 perm   1544 sec   (1036 perm/sec)   p_kst 4.031250e-04   p_cons 1.187563e-02   p_joint 3.462500e-04

Joint ci ratio: 1.657695e-01	ci left: 3.184243e-04	ci right 3.765655e-04	k: 558	n:1610000
Cons ci ratio: 2.818790e-02	ci left: 1.170223e-02	ci right 1.203742e-02	k: 19109	n:1610000
KS ci ratio: 1.539611e-01	ci left: 3.714961e-04	ci right 4.340507e-04	k: 647	n:1610000
STK11   1610000 perm   1561 sec   (1032 perm/sec)   p_kst 4.018634e-04   p_cons 1.186894e-02   p_joint 3.465839e-04

Joint ci ratio: 1.654738e-01	ci left: 3.176421e-04	ci right 3.755267e-04	k: 560	n:1620000
Cons ci ratio: 2.811164e-02	ci left: 1.169374e-02	ci right 1.202776e-02	k: 19213	n:1620000
KS ci ratio: 1.537242e-01	ci left: 3.703899e-04	ci right 4.326534e-04	k: 649	n:1620000
STK11   1620000 perm   1577 sec   (1027 perm/sec)   p_kst 4.006173e-04   p_cons 1.185988e-02   p_joint 3.456790e-04

Joint ci ratio: 1.650332e-01	ci left: 3.174577e-04	ci right 3.751394e-04	k: 563	n:1630000
Cons ci ratio: 2.802939e-02	ci left: 1.169084e-02	ci right 1.202378e-02	k: 19326	n:1630000
KS ci ratio: 1.532533e-01	ci left: 3.704773e-04	ci right 4.325473e-04	k: 653	n:1630000
STK11   1630000 perm   1594 sec   (1022 perm/sec)   p_kst 4.006135e-04   p_cons 1.185644e-02   p_joint 3.453988e-04

Joint ci ratio: 1.637317e-01	ci left: 3.207841e-04	ci right 3.785653e-04	k: 572	n:1640000
Cons ci ratio: 2.792968e-02	ci left: 1.170311e-02	ci right 1.203520e-02	k: 19464	n:1640000
KS ci ratio: 1.520947e-01	ci left: 3.740830e-04	ci right 4.362400e-04	k: 663	n:1640000
STK11   1640000 perm   1611 sec   (1018 perm/sec)   p_kst 4.042683e-04   p_cons 1.186829e-02   p_joint 3.487805e-04

Joint ci ratio: 1.626003e-01	ci left: 3.234905e-04	ci right 3.813172e-04	k: 580	n:1650000
Cons ci ratio: 2.783822e-02	ci left: 1.170922e-02	ci right 1.204038e-02	k: 19592	n:1650000
KS ci ratio: 1.512991e-01	ci left: 3.758972e-04	ci right 4.379995e-04	k: 670	n:1650000
STK11   1650000 perm   1628 sec   (1014 perm/sec)   p_kst 4.060606e-04   p_cons 1.187394e-02   p_joint 3.515152e-04

Joint ci ratio: 1.621822e-01	ci left: 3.232755e-04	ci right 3.809007e-04	k: 583	n:1660000
Cons ci ratio: 2.775407e-02	ci left: 1.170987e-02	ci right 1.204003e-02	k: 19711	n:1660000
KS ci ratio: 1.510742e-01	ci left: 3.747920e-04	ci right 4.366113e-04	k: 672	n:1660000
STK11   1660000 perm   1645 sec   (1009 perm/sec)   p_kst 4.048193e-04   p_cons 1.187410e-02   p_joint 3.512048e-04

Joint ci ratio: 1.617672e-01	ci left: 3.230633e-04	ci right 3.804890e-04	k: 586	n:1670000
Cons ci ratio: 2.766431e-02	ci left: 1.171587e-02	ci right 1.204511e-02	k: 19839	n:1670000
KS ci ratio: 1.509622e-01	ci left: 3.731239e-04	ci right 4.346183e-04	k: 673	n:1670000
STK11   1670000 perm   1662 sec   (1005 perm/sec)   p_kst 4.029940e-04   p_cons 1.187964e-02   p_joint 3.508982e-04

Joint ci ratio: 1.616297e-01	ci left: 3.217115e-04	ci right 3.788436e-04	k: 587	n:1680000
Cons ci ratio: 2.757124e-02	ci left: 1.172534e-02	ci right 1.205373e-02	k: 19973	n:1680000
KS ci ratio: 1.509624e-01	ci left: 3.709029e-04	ci right 4.320313e-04	k: 673	n:1680000
STK11   1680000 perm   1679 sec   (1001 perm/sec)   p_kst 4.005952e-04   p_cons 1.188869e-02   p_joint 3.494048e-04

Joint ci ratio: 1.613556e-01	ci left: 3.209435e-04	ci right 3.778331e-04	k: 589	n:1690000
Cons ci ratio: 2.749432e-02	ci left: 1.172178e-02	ci right 1.204913e-02	k: 20085	n:1690000
KS ci ratio: 1.502948e-01	ci left: 3.721247e-04	ci right 4.331589e-04	k: 679	n:1690000
STK11   1690000 perm   1696 sec   (997 perm/sec)   p_kst 4.017751e-04   p_cons 1.188462e-02   p_joint 3.485207e-04

Joint ci ratio: 1.605413e-01	ci left: 3.224428e-04	ci right 3.792820e-04	k: 595	n:1700000
Cons ci ratio: 2.741186e-02	ci left: 1.172351e-02	ci right 1.204992e-02	k: 20206	n:1700000
KS ci ratio: 1.497453e-01	ci left: 3.727665e-04	ci right 4.336624e-04	k: 684	n:1700000
STK11   1700000 perm   1713 sec   (993 perm/sec)   p_kst 4.023529e-04   p_cons 1.188588e-02   p_joint 3.500000e-04

Joint ci ratio: 1.602726e-01	ci left: 3.216798e-04	ci right 3.782805e-04	k: 597	n:1710000
Cons ci ratio: 2.733626e-02	ci left: 1.172000e-02	ci right 1.204540e-02	k: 20318	n:1710000
KS ci ratio: 1.494185e-01	ci left: 3.722753e-04	ci right 4.329464e-04	k: 687	n:1710000
STK11   1710000 perm   1730 sec   (989 perm/sec)   p_kst 4.017544e-04   p_cons 1.188187e-02   p_joint 3.491228e-04

Joint ci ratio: 1.602728e-01	ci left: 3.198096e-04	ci right 3.760812e-04	k: 597	n:1720000
Cons ci ratio: 2.725386e-02	ci left: 1.172289e-02	ci right 1.204737e-02	k: 20441	n:1720000
KS ci ratio: 1.489860e-01	ci left: 3.723497e-04	ci right 4.328416e-04	k: 691	n:1720000
STK11   1720000 perm   1747 sec   (984 perm/sec)   p_kst 4.017442e-04   p_cons 1.188430e-02   p_joint 3.470930e-04

Joint ci ratio: 1.597394e-01	ci left: 3.201805e-04	ci right 3.763120e-04	k: 601	n:1730000
Cons ci ratio: 2.717287e-02	ci left: 1.172516e-02	ci right 1.204873e-02	k: 20563	n:1730000
KS ci ratio: 1.489862e-01	ci left: 3.701974e-04	ci right 4.303397e-04	k: 691	n:1730000
STK11   1730000 perm   1765 sec   (980 perm/sec)   p_kst 3.994220e-04   p_cons 1.188613e-02   p_joint 3.473988e-04

Joint ci ratio: 1.594748e-01	ci left: 3.194439e-04	ci right 3.753446e-04	k: 603	n:1740000
Cons ci ratio: 2.709591e-02	ci left: 1.172456e-02	ci right 1.204718e-02	k: 20680	n:1740000
KS ci ratio: 1.487714e-01	ci left: 3.691764e-04	ci right 4.290587e-04	k: 693	n:1740000
STK11   1740000 perm   1782 sec   (976 perm/sec)   p_kst 3.982759e-04   p_cons 1.188506e-02   p_joint 3.465517e-04

Joint ci ratio: 1.617685e-01	ci left: 3.082945e-04	ci right 3.630955e-04	k: 586	n:1750000
Cons ci ratio: 2.767050e-02	ci left: 1.118138e-02	ci right 1.149567e-02	k: 19841	n:1750000
KS ci ratio: 1.482384e-01	ci left: 3.698178e-04	ci right 4.295701e-04	k: 698	n:1750000
STK11   1750000 perm   1800 sec   (972 perm/sec)   p_kst 3.988571e-04   p_cons 1.133771e-02   p_joint 3.348571e-04

Joint ci ratio: 1.614937e-01	ci left: 3.076333e-04	ci right 3.622148e-04	k: 588	n:1760000
Cons ci ratio: 2.758646e-02	ci left: 1.118612e-02	ci right 1.149958e-02	k: 19962	n:1760000
KS ci ratio: 1.479213e-01	ci left: 3.693579e-04	ci right 4.288971e-04	k: 701	n:1760000
STK11   1760000 perm   1818 sec   (968 perm/sec)   p_kst 3.982955e-04   p_cons 1.134205e-02   p_joint 3.340909e-04

Joint ci ratio: 1.614939e-01	ci left: 3.058952e-04	ci right 3.601684e-04	k: 588	n:1770000
Cons ci ratio: 2.750872e-02	ci left: 1.118632e-02	ci right 1.149889e-02	k: 20075	n:1770000
KS ci ratio: 1.476063e-01	ci left: 3.689034e-04	ci right 4.282314e-04	k: 704	n:1770000
STK11   1770000 perm   1835 sec   (964 perm/sec)   p_kst 3.977401e-04   p_cons 1.134181e-02   p_joint 3.322034e-04

Joint ci ratio: 1.610842e-01	ci left: 3.057940e-04	ci right 3.598983e-04	k: 591	n:1780000
Cons ci ratio: 2.742476e-02	ci left: 1.119211e-02	ci right 1.150387e-02	k: 20198	n:1780000
KS ci ratio: 1.472933e-01	ci left: 3.684541e-04	ci right 4.275732e-04	k: 707	n:1780000
STK11   1780000 perm   1854 sec   (960 perm/sec)   p_kst 3.971910e-04   p_cons 1.134719e-02   p_joint 3.320225e-04

Joint ci ratio: 1.606776e-01	ci left: 3.056942e-04	ci right 3.596311e-04	k: 594	n:1790000
Cons ci ratio: 2.733748e-02	ci left: 1.120116e-02	ci right 1.151216e-02	k: 20327	n:1790000
KS ci ratio: 1.469822e-01	ci left: 3.680100e-04	ci right 4.269222e-04	k: 710	n:1790000
STK11   1790000 perm   1872 sec   (956 perm/sec)   p_kst 3.966480e-04   p_cons 1.135587e-02   p_joint 3.318436e-04

Joint ci ratio: 1.602740e-01	ci left: 3.055956e-04	ci right 3.593667e-04	k: 597	n:1800000
Cons ci ratio: 2.725440e-02	ci left: 1.120735e-02	ci right 1.151756e-02	k: 20451	n:1800000
KS ci ratio: 1.468791e-01	ci left: 3.665006e-04	ci right 4.251264e-04	k: 711	n:1800000
STK11   1800000 perm   1890 sec   (953 perm/sec)   p_kst 3.950000e-04   p_cons 1.136167e-02   p_joint 3.316667e-04

Joint ci ratio: 1.597407e-01	ci left: 3.060287e-04	ci right 3.596796e-04	k: 601	n:1810000
Cons ci ratio: 2.718009e-02	ci left: 1.120688e-02	ci right 1.151623e-02	k: 20563	n:1810000
KS ci ratio: 1.463660e-01	ci left: 3.671368e-04	ci right 4.256413e-04	k: 716	n:1810000
STK11   1810000 perm   1908 sec   (949 perm/sec)   p_kst 3.955801e-04   p_cons 1.136077e-02   p_joint 3.320442e-04

Joint ci ratio: 1.594760e-01	ci left: 3.054023e-04	ci right 3.588461e-04	k: 603	n:1820000
Cons ci ratio: 2.710042e-02	ci left: 1.121134e-02	ci right 1.151989e-02	k: 20684	n:1820000
KS ci ratio: 1.461624e-01	ci left: 3.661783e-04	ci right 4.244417e-04	k: 718	n:1820000
STK11   1820000 perm   1926 sec   (945 perm/sec)   p_kst 3.945055e-04   p_cons 1.136484e-02   p_joint 3.313187e-04

Joint ci ratio: 1.592127e-01	ci left: 3.047827e-04	ci right 3.580217e-04	k: 605	n:1830000
Cons ci ratio: 2.701882e-02	ci left: 1.121792e-02	ci right 1.152570e-02	k: 20809	n:1830000
KS ci ratio: 1.459596e-01	ci left: 3.652303e-04	ci right 4.232552e-04	k: 720	n:1830000
STK11   1830000 perm   1945 sec   (941 perm/sec)   p_kst 3.934426e-04   p_cons 1.137104e-02   p_joint 3.306011e-04

Joint ci ratio: 1.586898e-01	ci left: 3.052137e-04	ci right 3.583362e-04	k: 609	n:1840000
Cons ci ratio: 2.694642e-02	ci left: 1.121741e-02	ci right 1.152434e-02	k: 20921	n:1840000
KS ci ratio: 1.452561e-01	ci left: 3.669111e-04	ci right 4.248977e-04	k: 727	n:1840000
STK11   1840000 perm   1963 sec   (937 perm/sec)   p_kst 3.951087e-04   p_cons 1.137011e-02   p_joint 3.309783e-04

Joint ci ratio: 1.584304e-01	ci left: 3.046021e-04	ci right 3.575232e-04	k: 611	n:1850000
Cons ci ratio: 2.686878e-02	ci left: 1.122174e-02	ci right 1.152790e-02	k: 21042	n:1850000
KS ci ratio: 1.449578e-01	ci left: 3.664905e-04	ci right 4.242814e-04	k: 730	n:1850000
STK11   1850000 perm   1982 sec   (933 perm/sec)   p_kst 3.945946e-04   p_cons 1.137405e-02   p_joint 3.302703e-04

Joint ci ratio: 1.600075e-01	ci left: 2.967698e-04	ci right 3.488927e-04	k: 599	n:1860000
Cons ci ratio: 2.678925e-02	ci left: 1.122817e-02	ci right 1.153357e-02	k: 21167	n:1860000
KS ci ratio: 1.445628e-01	ci left: 3.665928e-04	ci right 4.242287e-04	k: 734	n:1860000
STK11   1860000 perm   2001 sec   (930 perm/sec)   p_kst 3.946237e-04   p_cons 1.138011e-02   p_joint 3.220430e-04

Joint ci ratio: 1.594767e-01	ci left: 2.972363e-04	ci right 3.492514e-04	k: 603	n:1870000
Cons ci ratio: 2.670852e-02	ci left: 1.123611e-02	ci right 1.154080e-02	k: 21295	n:1870000
KS ci ratio: 1.438791e-01	ci left: 3.682407e-04	ci right 4.258384e-04	k: 741	n:1870000
STK11   1870000 perm   2019 sec   (926 perm/sec)   p_kst 3.962567e-04   p_cons 1.138770e-02   p_joint 3.224599e-04

Joint ci ratio: 1.393498e-01	ci left: 3.914229e-04	ci right 4.505593e-04	k: 790	n:1880000
Cons ci ratio: 2.664928e-02	ci left: 1.122654e-02	ci right 1.153028e-02	k: 21390	n:1880000
KS ci ratio: 1.410549e-01	ci left: 3.816708e-04	ci right 4.400989e-04	k: 771	n:1880000
STK11   1880000 perm   2038 sec   (922 perm/sec)   p_kst 4.101064e-04   p_cons 1.137766e-02   p_joint 4.202128e-04

Joint ci ratio: 1.393499e-01	ci left: 3.893518e-04	ci right 4.481755e-04	k: 790	n:1890000
Cons ci ratio: 2.657418e-02	ci left: 1.123074e-02	ci right 1.153372e-02	k: 21511	n:1890000
KS ci ratio: 1.409637e-01	ci left: 3.801618e-04	ci right 4.383181e-04	k: 772	n:1890000
STK11   1890000 perm   2057 sec   (919 perm/sec)   p_kst 4.084656e-04   p_cons 1.138148e-02   p_joint 4.179894e-04

Joint ci ratio: 1.389989e-01	ci left: 3.893346e-04	ci right 4.479952e-04	k: 794	n:1900000
Cons ci ratio: 2.650032e-02	ci left: 1.123437e-02	ci right 1.153660e-02	k: 21631	n:1900000
KS ci ratio: 1.406004e-01	ci left: 3.801921e-04	ci right 4.381905e-04	k: 776	n:1900000
STK11   1900000 perm   2076 sec   (915 perm/sec)   p_kst 4.084211e-04   p_cons 1.138474e-02   p_joint 4.178947e-04

Joint ci ratio: 1.381327e-01	ci left: 3.923503e-04	ci right 4.510666e-04	k: 804	n:1910000
Cons ci ratio: 2.642278e-02	ci left: 1.124160e-02	ci right 1.154313e-02	k: 21758	n:1910000
KS ci ratio: 1.404199e-01	ci left: 3.792118e-04	ci right 4.369802e-04	k: 778	n:1910000
STK11   1910000 perm   2096 sec   (911 perm/sec)   p_kst 4.073298e-04   p_cons 1.139162e-02   p_joint 4.209424e-04

Joint ci ratio: 1.380471e-01	ci left: 3.908096e-04	ci right 4.492561e-04	k: 805	n:1920000
Cons ci ratio: 2.634957e-02	ci left: 1.124566e-02	ci right 1.154644e-02	k: 21879	n:1920000
KS ci ratio: 1.404200e-01	ci left: 3.772368e-04	ci right 4.347043e-04	k: 778	n:1920000
STK11   1920000 perm   2115 sec   (908 perm/sec)   p_kst 4.052083e-04   p_cons 1.139531e-02   p_joint 4.192708e-04

Joint ci ratio: 1.380472e-01	ci left: 3.887847e-04	ci right 4.469284e-04	k: 805	n:1930000
Cons ci ratio: 2.628724e-02	ci left: 1.124092e-02	ci right 1.154086e-02	k: 21983	n:1930000
KS ci ratio: 1.402402e-01	ci left: 3.762820e-04	ci right 4.335246e-04	k: 780	n:1930000
STK11   1930000 perm   2134 sec   (904 perm/sec)   p_kst 4.041451e-04   p_cons 1.139016e-02   p_joint 4.170984e-04

Joint ci ratio: 1.377060e-01	ci left: 3.887714e-04	ci right 4.467576e-04	k: 809	n:1940000
Cons ci ratio: 2.623075e-02	ci left: 1.123163e-02	ci right 1.153066e-02	k: 22078	n:1940000
KS ci ratio: 1.399717e-01	ci left: 3.758346e-04	ci right 4.328905e-04	k: 783	n:1940000
STK11   1940000 perm   2154 sec   (901 perm/sec)   p_kst 4.036082e-04   p_cons 1.138041e-02   p_joint 4.170103e-04

Joint ci ratio: 1.372829e-01	ci left: 3.892536e-04	ci right 4.471187e-04	k: 814	n:1950000
Cons ci ratio: 2.616866e-02	ci left: 1.122752e-02	ci right 1.152573e-02	k: 22183	n:1950000
KS ci ratio: 1.394391e-01	ci left: 3.768767e-04	ci right 4.338550e-04	k: 789	n:1950000
STK11   1950000 perm   2173 sec   (897 perm/sec)   p_kst 4.046154e-04   p_cons 1.137590e-02   p_joint 4.174359e-04

Joint ci ratio: 1.370309e-01	ci left: 3.887457e-04	ci right 4.464206e-04	k: 817	n:1960000
Cons ci ratio: 2.609931e-02	ci left: 1.123005e-02	ci right 1.152752e-02	k: 22301	n:1960000
KS ci ratio: 1.391751e-01	ci left: 3.764311e-04	ci right 4.332253e-04	k: 792	n:1960000
STK11   1960000 perm   2193 sec   (894 perm/sec)   p_kst 4.040816e-04   p_cons 1.137806e-02   p_joint 4.168367e-04

Joint ci ratio: 1.367804e-01	ci left: 3.882430e-04	ci right 4.457295e-04	k: 820	n:1970000
Cons ci ratio: 2.603815e-02	ci left: 1.122599e-02	ci right 1.152265e-02	k: 22406	n:1970000
KS ci ratio: 1.389126e-01	ci left: 3.759901e-04	ci right 4.326020e-04	k: 795	n:1970000
STK11   1970000 perm   2213 sec   (890 perm/sec)   p_kst 4.035533e-04   p_cons 1.137360e-02   p_joint 4.162437e-04

Joint ci ratio: 1.365312e-01	ci left: 3.877455e-04	ci right 4.450453e-04	k: 823	n:1980000
Cons ci ratio: 2.596750e-02	ci left: 1.123051e-02	ci right 1.152647e-02	k: 22528	n:1980000
KS ci ratio: 1.385649e-01	ci left: 3.760413e-04	ci right 4.325074e-04	k: 799	n:1980000
STK11   1980000 perm   2232 sec   (887 perm/sec)   p_kst 4.035354e-04   p_cons 1.137778e-02   p_joint 4.156566e-04

Joint ci ratio: 1.362834e-01	ci left: 3.872532e-04	ci right 4.443678e-04	k: 826	n:1990000
Cons ci ratio: 2.590089e-02	ci left: 1.123199e-02	ci right 1.152722e-02	k: 22644	n:1990000
KS ci ratio: 1.382198e-01	ci left: 3.760921e-04	ci right 4.324136e-04	k: 803	n:1990000
STK11   1990000 perm   2252 sec   (884 perm/sec)   p_kst 4.035176e-04   p_cons 1.137889e-02   p_joint 4.150754e-04

Joint ci ratio: 1.362835e-01	ci left: 3.853169e-04	ci right 4.421460e-04	k: 826	n:2000000
Cons ci ratio: 2.585375e-02	ci left: 1.121706e-02	ci right 1.151135e-02	k: 22727	n:2000000
KS ci ratio: 1.377919e-01	ci left: 3.766253e-04	ci right 4.328378e-04	k: 808	n:2000000
STK11   2000000 perm   2271 sec   (881 perm/sec)   p_kst 4.040000e-04   p_cons 1.136350e-02   p_joint 4.130000e-04

Joint ci ratio: 1.360371e-01	ci left: 3.848416e-04	ci right 4.414897e-04	k: 829	n:2010000
Cons ci ratio: 2.578744e-02	ci left: 1.121909e-02	ci right 1.151267e-02	k: 22844	n:2010000
KS ci ratio: 1.374526e-01	ci left: 3.766731e-04	ci right 4.327429e-04	k: 812	n:2010000
STK11   2010000 perm   2291 sec   (877 perm/sec)   p_kst 4.039801e-04   p_cons 1.136517e-02   p_joint 4.124378e-04

Joint ci ratio: 1.355479e-01	ci left: 3.858058e-04	ci right 4.423752e-04	k: 835	n:2020000
Cons ci ratio: 2.572277e-02	ci left: 1.122011e-02	ci right 1.151297e-02	k: 22959	n:2020000
KS ci ratio: 1.366978e-01	ci left: 3.791110e-04	ci right 4.352087e-04	k: 821	n:2020000
STK11   2020000 perm   2311 sec   (874 perm/sec)   p_kst 4.064356e-04   p_cons 1.136584e-02   p_joint 4.133663e-04

Joint ci ratio: 1.354671e-01	ci left: 3.843812e-04	ci right 4.407053e-04	k: 836	n:2030000
Cons ci ratio: 2.565577e-02	ci left: 1.122358e-02	ci right 1.151575e-02	k: 23079	n:2030000
KS ci ratio: 1.365319e-01	ci left: 3.781950e-04	ci right 4.340837e-04	k: 823	n:2030000
STK11   2030000 perm   2331 sec   (871 perm/sec)   p_kst 4.054187e-04   p_cons 1.136897e-02   p_joint 4.118227e-04

Joint ci ratio: 1.351445e-01	ci left: 3.843914e-04	ci right 4.405721e-04	k: 840	n:2040000
Cons ci ratio: 2.558037e-02	ci left: 1.123480e-02	ci right 1.152639e-02	k: 23215	n:2040000
KS ci ratio: 1.362841e-01	ci left: 3.777615e-04	ci right 4.334766e-04	k: 826	n:2040000
STK11   2040000 perm   2351 sec   (868 perm/sec)   p_kst 4.049020e-04   p_cons 1.137990e-02   p_joint 4.117647e-04

Joint ci ratio: 1.357109e-01	ci left: 3.792173e-04	ci right 4.348928e-04	k: 833	n:2050000
Cons ci ratio: 2.551614e-02	ci left: 1.123670e-02	ci right 1.152761e-02	k: 23332	n:2050000
KS ci ratio: 1.362019e-01	ci left: 3.763900e-04	ci right 4.318666e-04	k: 827	n:2050000
STK11   2050000 perm   2372 sec   (864 perm/sec)   p_kst 4.034146e-04   p_cons 1.138146e-02   p_joint 4.063415e-04

Joint ci ratio: 1.354675e-01	ci left: 3.787833e-04	ci right 4.342874e-04	k: 836	n:2060000
Cons ci ratio: 2.546117e-02	ci left: 1.123087e-02	ci right 1.152099e-02	k: 23433	n:2060000
KS ci ratio: 1.361198e-01	ci left: 3.750317e-04	ci right 4.302721e-04	k: 828	n:2060000
STK11   2060000 perm   2392 sec   (861 perm/sec)   p_kst 4.019417e-04   p_cons 1.137524e-02   p_joint 4.058252e-04

Joint ci ratio: 1.351449e-01	ci left: 3.788204e-04	ci right 4.341871e-04	k: 840	n:2070000
Cons ci ratio: 2.539946e-02	ci left: 1.123134e-02	ci right 1.152075e-02	k: 23547	n:2070000
KS ci ratio: 1.358742e-01	ci left: 3.746199e-04	ci right 4.296921e-04	k: 831	n:2070000
STK11   2070000 perm   2413 sec   (858 perm/sec)   p_kst 4.014493e-04   p_cons 1.137536e-02   p_joint 4.057971e-04

Joint ci ratio: 1.364498e-01	ci left: 3.695681e-04	ci right 4.241464e-04	k: 824	n:2080000
Cons ci ratio: 2.533983e-02	ci left: 1.123037e-02	ci right 1.151907e-02	k: 23658	n:2080000
KS ci ratio: 1.356299e-01	ci left: 3.742122e-04	ci right 4.291175e-04	k: 834	n:2080000
STK11   2080000 perm   2433 sec   (855 perm/sec)   p_kst 4.009615e-04   p_cons 1.137404e-02   p_joint 3.961538e-04

Joint ci ratio: 1.373691e-01	ci left: 3.627168e-04	ci right 4.166737e-04	k: 813	n:2090000
Cons ci ratio: 2.528007e-02	ci left: 1.122989e-02	ci right 1.151788e-02	k: 23770	n:2090000
KS ci ratio: 1.355489e-01	ci left: 3.728839e-04	ci right 4.275590e-04	k: 835	n:2090000
STK11   2090000 perm   2454 sec   (852 perm/sec)   p_kst 3.995215e-04   p_cons 1.137321e-02   p_joint 3.889952e-04

Joint ci ratio: 1.368656e-01	ci left: 3.637487e-04	ci right 4.176447e-04	k: 819	n:2100000
Cons ci ratio: 2.520793e-02	ci left: 1.124076e-02	ci right 1.152820e-02	k: 23906	n:2100000
KS ci ratio: 1.352258e-01	ci left: 3.729485e-04	ci right 4.274923e-04	k: 839	n:2100000
STK11   2100000 perm   2475 sec   (849 perm/sec)   p_kst 3.995238e-04   p_cons 1.138381e-02   p_joint 3.900000e-04

Joint ci ratio: 1.386533e-01	ci left: 3.524150e-04	ci right 4.053701e-04	k: 798	n:2110000
Cons ci ratio: 2.514275e-02	ci left: 1.124589e-02	ci right 1.153271e-02	k: 24030	n:2110000
KS ci ratio: 1.346657e-01	ci left: 3.743866e-04	ci right 4.288957e-04	k: 846	n:2110000
STK11   2110000 perm   2496 sec   (845 perm/sec)   p_kst 4.009479e-04   p_cons 1.138863e-02   p_joint 3.781991e-04

Joint ci ratio: 1.383076e-01	ci left: 3.525741e-04	ci right 4.054101e-04	k: 802	n:2120000
Cons ci ratio: 2.508437e-02	ci left: 1.124534e-02	ci right 1.153147e-02	k: 24142	n:2120000
KS ci ratio: 1.344279e-01	ci left: 3.739880e-04	ci right 4.283353e-04	k: 849	n:2120000
STK11   2120000 perm   2517 sec   (842 perm/sec)   p_kst 4.004717e-04   p_cons 1.138774e-02   p_joint 3.783019e-04

Joint ci ratio: 1.391773e-01	ci left: 3.463869e-04	ci right 3.986491e-04	k: 792	n:2130000
Cons ci ratio: 2.502379e-02	ci left: 1.124713e-02	ci right 1.153260e-02	k: 24259	n:2130000
KS ci ratio: 1.341127e-01	ci left: 3.740471e-04	ci right 4.282653e-04	k: 853	n:2130000
STK11   2130000 perm   2538 sec   (839 perm/sec)   p_kst 4.004695e-04   p_cons 1.138920e-02   p_joint 3.718310e-04

Joint ci ratio: 1.387406e-01	ci left: 3.470235e-04	ci right 3.992039e-04	k: 797	n:2140000
Cons ci ratio: 2.497298e-02	ci left: 1.124055e-02	ci right 1.152526e-02	k: 24358	n:2140000
KS ci ratio: 1.336440e-01	ci left: 3.750090e-04	ci right 4.291616e-04	k: 859	n:2140000
STK11   2140000 perm   2559 sec   (836 perm/sec)   p_kst 4.014019e-04   p_cons 1.138224e-02   p_joint 3.724299e-04

Joint ci ratio: 1.387407e-01	ci left: 3.454094e-04	ci right 3.973472e-04	k: 797	n:2150000
Cons ci ratio: 2.492041e-02	ci left: 1.123587e-02	ci right 1.151986e-02	k: 24461	n:2150000
KS ci ratio: 1.336441e-01	ci left: 3.732648e-04	ci right 4.271656e-04	k: 859	n:2150000
STK11   2150000 perm   2580 sec   (833 perm/sec)   p_kst 3.995349e-04   p_cons 1.137721e-02   p_joint 3.706977e-04

Joint ci ratio: 1.384807e-01	ci left: 3.451510e-04	ci right 3.969446e-04	k: 800	n:2160000
Cons ci ratio: 2.486408e-02	ci left: 1.123492e-02	ci right 1.151824e-02	k: 24572	n:2160000
KS ci ratio: 1.333344e-01	ci left: 3.733267e-04	ci right 4.271016e-04	k: 863	n:2160000
STK11   2160000 perm   2601 sec   (830 perm/sec)   p_kst 3.995370e-04   p_cons 1.137593e-02   p_joint 3.703704e-04

Joint ci ratio: 1.377941e-01	ci left: 3.471197e-04	ci right 3.989293e-04	k: 808	n:2170000
Cons ci ratio: 2.481067e-02	ci left: 1.123169e-02	ci right 1.151431e-02	k: 24678	n:2170000
KS ci ratio: 1.331036e-01	ci left: 3.729427e-04	ci right 4.265619e-04	k: 866	n:2170000
STK11   2170000 perm   2622 sec   (827 perm/sec)   p_kst 3.990783e-04   p_cons 1.137235e-02   p_joint 3.723502e-04

Joint ci ratio: 1.376242e-01	ci left: 3.464132e-04	ci right 3.980484e-04	k: 810	n:2180000
Cons ci ratio: 2.475003e-02	ci left: 1.123533e-02	ci right 1.151734e-02	k: 24799	n:2180000
KS ci ratio: 1.329504e-01	ci left: 3.721189e-04	ci right 4.255532e-04	k: 868	n:2180000
STK11   2180000 perm   2644 sec   (824 perm/sec)   p_kst 3.981651e-04   p_cons 1.137569e-02   p_joint 3.715596e-04

Joint ci ratio: 1.385676e-01	ci left: 3.399821e-04	ci right 3.910347e-04	k: 799	n:2190000
Cons ci ratio: 2.469584e-02	ci left: 1.123349e-02	ci right 1.151483e-02	k: 24908	n:2190000
KS ci ratio: 1.327215e-01	ci left: 3.717440e-04	ci right 4.250254e-04	k: 871	n:2190000
STK11   2190000 perm   2666 sec   (821 perm/sec)   p_kst 3.977169e-04   p_cons 1.137352e-02   p_joint 3.648402e-04

Joint ci ratio: 1.383947e-01	ci left: 3.393143e-04	ci right 3.901978e-04	k: 801	n:2200000
Cons ci ratio: 2.464749e-02	ci left: 1.122670e-02	ci right 1.150731e-02	k: 25006	n:2200000
KS ci ratio: 1.323426e-01	ci left: 3.722517e-04	ci right 4.254415e-04	k: 876	n:2200000
STK11   2200000 perm   2688 sec   (819 perm/sec)   p_kst 3.981818e-04   p_cons 1.136636e-02   p_joint 3.640909e-04

Joint ci ratio: 1.382226e-01	ci left: 3.386526e-04	ci right 3.893685e-04	k: 803	n:2210000
Cons ci ratio: 2.459546e-02	ci left: 1.122357e-02	ci right 1.150350e-02	k: 25112	n:2210000
KS ci ratio: 1.318175e-01	ci left: 3.736301e-04	ci right 4.267884e-04	k: 883	n:2210000
STK11   2210000 perm   2709 sec   (816 perm/sec)   p_kst 3.995475e-04   p_cons 1.136290e-02   p_joint 3.633484e-04

Joint ci ratio: 1.380510e-01	ci left: 3.379969e-04	ci right 3.885466e-04	k: 805	n:2220000
Cons ci ratio: 2.453442e-02	ci left: 1.122898e-02	ci right 1.150834e-02	k: 25237	n:2220000
KS ci ratio: 1.315202e-01	ci left: 3.736895e-04	ci right 4.267270e-04	k: 887	n:2220000
STK11   2220000 perm   2731 sec   (813 perm/sec)   p_kst 3.995495e-04   p_cons 1.136802e-02   p_joint 3.626126e-04

Joint ci ratio: 1.378801e-01	ci left: 3.373471e-04	ci right 3.877321e-04	k: 807	n:2230000
Cons ci ratio: 2.447821e-02	ci left: 1.123032e-02	ci right 1.150907e-02	k: 25353	n:2230000
KS ci ratio: 1.312987e-01	ci left: 3.733148e-04	ci right 4.262030e-04	k: 890	n:2230000
STK11   2230000 perm   2753 sec   (810 perm/sec)   p_kst 3.991031e-04   p_cons 1.136906e-02   p_joint 3.618834e-04

Joint ci ratio: 1.373709e-01	ci left: 3.384274e-04	ci right 3.887718e-04	k: 813	n:2240000
Cons ci ratio: 2.441270e-02	ci left: 1.124053e-02	ci right 1.151877e-02	k: 25489	n:2240000
KS ci ratio: 1.304954e-01	ci left: 3.763982e-04	ci right 4.293717e-04	k: 901	n:2240000
STK11   2240000 perm   2775 sec   (807 perm/sec)   p_kst 4.022321e-04   p_cons 1.137902e-02   p_joint 3.629464e-04

Joint ci ratio: 1.371185e-01	ci left: 3.382109e-04	ci right 3.884230e-04	k: 816	n:2250000
Cons ci ratio: 2.435396e-02	ci left: 1.124491e-02	ci right 1.152258e-02	k: 25612	n:2250000
KS ci ratio: 1.302790e-01	ci left: 3.760151e-04	ci right 4.288401e-04	k: 904	n:2250000
STK11   2250000 perm   2797 sec   (804 perm/sec)   p_kst 4.017778e-04   p_cons 1.138311e-02   p_joint 3.626667e-04

Joint ci ratio: 1.371186e-01	ci left: 3.367143e-04	ci right 3.867044e-04	k: 816	n:2260000
Cons ci ratio: 2.430377e-02	ci left: 1.124177e-02	ci right 1.151878e-02	k: 25718	n:2260000
KS ci ratio: 1.302791e-01	ci left: 3.743513e-04	ci right 4.269426e-04	k: 904	n:2260000
STK11   2260000 perm   2819 sec   (802 perm/sec)   p_kst 4.000000e-04   p_cons 1.137965e-02   p_joint 3.610619e-04

Joint ci ratio: 1.367009e-01	ci left: 3.373582e-04	ci right 3.872789e-04	k: 821	n:2270000
Cons ci ratio: 2.424249e-02	ci left: 1.124917e-02	ci right 1.152565e-02	k: 25848	n:2270000
KS ci ratio: 1.299207e-01	ci left: 3.748332e-04	ci right 4.273361e-04	k: 909	n:2270000
STK11   2270000 perm   2842 sec   (799 perm/sec)   p_kst 4.004405e-04   p_cons 1.138678e-02   p_joint 3.616740e-04

Joint ci ratio: 1.362046e-01	ci left: 3.384203e-04	ci right 3.883016e-04	k: 827	n:2280000
Cons ci ratio: 2.419062e-02	ci left: 1.124822e-02	ci right 1.152408e-02	k: 25959	n:2280000
KS ci ratio: 1.294944e-01	ci left: 3.757354e-04	ci right 4.281788e-04	k: 915	n:2280000
STK11   2280000 perm   2864 sec   (796 perm/sec)   p_kst 4.013158e-04   p_cons 1.138553e-02   p_joint 3.627193e-04

Joint ci ratio: 1.361226e-01	ci left: 3.373643e-04	ci right 3.870576e-04	k: 828	n:2290000
Cons ci ratio: 2.413487e-02	ci left: 1.125118e-02	ci right 1.152647e-02	k: 26079	n:2290000
KS ci ratio: 1.293533e-01	ci left: 3.749397e-04	ci right 4.272106e-04	k: 917	n:2290000
STK11   2290000 perm   2886 sec   (793 perm/sec)   p_kst 4.004367e-04   p_cons 1.138821e-02   p_joint 3.615721e-04

Joint ci ratio: 1.359587e-01	ci left: 3.367375e-04	ci right 3.862738e-04	k: 830	n:2300000
Cons ci ratio: 2.407811e-02	ci left: 1.125542e-02	ci right 1.153016e-02	k: 26202	n:2300000
KS ci ratio: 1.292830e-01	ci left: 3.737302e-04	ci right 4.258020e-04	k: 918	n:2300000
STK11   2300000 perm   2909 sec   (791 perm/sec)   p_kst 3.991304e-04   p_cons 1.139217e-02   p_joint 3.608696e-04

Joint ci ratio: 1.357140e-01	ci left: 3.365343e-04	ci right 3.859445e-04	k: 833	n:2310000
Cons ci ratio: 2.403560e-02	ci left: 1.124671e-02	ci right 1.152075e-02	k: 26295	n:2310000
KS ci ratio: 1.290026e-01	ci left: 3.737880e-04	ci right 4.257462e-04	k: 922	n:2310000
STK11   2310000 perm   2931 sec   (788 perm/sec)   p_kst 3.991342e-04   p_cons 1.138312e-02   p_joint 3.606061e-04

Joint ci ratio: 1.372875e-01	ci left: 3.271736e-04	ci right 3.758119e-04	k: 814	n:2320000
Cons ci ratio: 2.397312e-02	ci left: 1.125693e-02	ci right 1.153049e-02	k: 26432	n:2320000
KS ci ratio: 1.285161e-01	ci left: 3.750969e-04	ci right 4.270255e-04	k: 929	n:2320000
STK11   2320000 perm   2954 sec   (785 perm/sec)   p_kst 4.004310e-04   p_cons 1.139310e-02   p_joint 3.508621e-04

Joint ci ratio: 1.369518e-01	ci left: 3.274273e-04	ci right 3.759746e-04	k: 818	n:2330000
Cons ci ratio: 2.391885e-02	ci left: 1.125981e-02	ci right 1.153282e-02	k: 26552	n:2330000
KS ci ratio: 1.283093e-01	ci left: 3.747332e-04	ci right 4.265217e-04	k: 932	n:2330000
STK11   2330000 perm   2977 sec   (783 perm/sec)   p_kst 4.000000e-04   p_cons 1.139571e-02   p_joint 3.510730e-04

Joint ci ratio: 1.374565e-01	ci left: 3.235519e-04	ci right 3.717158e-04	k: 812	n:2340000
Cons ci ratio: 2.386450e-02	ci left: 1.126310e-02	ci right 1.153555e-02	k: 26673	n:2340000
KS ci ratio: 1.281721e-01	ci left: 3.739591e-04	ci right 4.255810e-04	k: 934	n:2340000
STK11   2340000 perm   3000 sec   (780 perm/sec)   p_kst 3.991453e-04   p_cons 1.139872e-02   p_joint 3.470085e-04

Joint ci ratio: 1.369520e-01	ci left: 3.246406e-04	ci right 3.727748e-04	k: 818	n:2350000
Cons ci ratio: 2.382087e-02	ci left: 1.125662e-02	ci right 1.152841e-02	k: 26771	n:2350000
KS ci ratio: 1.279670e-01	ci left: 3.736035e-04	ci right 4.250875e-04	k: 937	n:2350000
STK11   2350000 perm   3023 sec   (777 perm/sec)   p_kst 3.987234e-04   p_cons 1.139191e-02   p_joint 3.480851e-04

Joint ci ratio: 1.372879e-01	ci left: 3.216282e-04	ci right 3.694423e-04	k: 814	n:2360000
Cons ci ratio: 2.377076e-02	ci left: 1.125652e-02	ci right 1.152773e-02	k: 26884	n:2360000
KS ci ratio: 1.278989e-01	ci left: 3.724306e-04	ci right 4.237236e-04	k: 938	n:2360000
STK11   2360000 perm   3046 sec   (775 perm/sec)   p_kst 3.974576e-04   p_cons 1.139153e-02   p_joint 3.449153e-04

Joint ci ratio: 1.371198e-01	ci left: 3.210861e-04	ci right 3.687563e-04	k: 816	n:2370000
Cons ci ratio: 2.372408e-02	ci left: 1.125348e-02	ci right 1.152408e-02	k: 26990	n:2370000
KS ci ratio: 1.276951e-01	ci left: 3.720845e-04	ci right 4.232420e-04	k: 941	n:2370000
STK11   2370000 perm   3069 sec   (772 perm/sec)   p_kst 3.970464e-04   p_cons 1.138819e-02   p_joint 3.443038e-04

Joint ci ratio: 1.369523e-01	ci left: 3.205485e-04	ci right 3.680760e-04	k: 818	n:2380000
Cons ci ratio: 2.367811e-02	ci left: 1.125006e-02	ci right 1.152004e-02	k: 27095	n:2380000
KS ci ratio: 1.272903e-01	ci left: 3.729617e-04	ci right 4.240650e-04	k: 947	n:2380000
STK11   2380000 perm   3092 sec   (770 perm/sec)   p_kst 3.978992e-04   p_cons 1.138445e-02   p_joint 3.436975e-04

Joint ci ratio: 1.368688e-01	ci left: 3.196114e-04	ci right 3.669687e-04	k: 819	n:2390000
Cons ci ratio: 2.363592e-02	ci left: 1.124333e-02	ci right 1.151267e-02	k: 27192	n:2390000
KS ci ratio: 1.270894e-01	ci left: 3.726165e-04	ci right 4.235859e-04	k: 950	n:2390000
STK11   2390000 perm   3115 sec   (767 perm/sec)   p_kst 3.974895e-04   p_cons 1.137741e-02   p_joint 3.426778e-04

Joint ci ratio: 1.364534e-01	ci left: 3.202918e-04	ci right 3.675942e-04	k: 824	n:2400000
Cons ci ratio: 2.358785e-02	ci left: 1.124246e-02	ci right 1.151122e-02	k: 27303	n:2400000
KS ci ratio: 1.269560e-01	ci left: 3.718708e-04	ci right 4.226807e-04	k: 952	n:2400000
STK11   2400000 perm   3139 sec   (765 perm/sec)   p_kst 3.966667e-04   p_cons 1.137625e-02   p_joint 3.433333e-04

Joint ci ratio: 1.363708e-01	ci left: 3.193635e-04	ci right 3.664980e-04	k: 825	n:2410000
Cons ci ratio: 2.353355e-02	ci left: 1.124779e-02	ci right 1.151605e-02	k: 27429	n:2410000
KS ci ratio: 1.266904e-01	ci left: 3.719348e-04	ci right 4.226393e-04	k: 956	n:2410000
STK11   2410000 perm   3162 sec   (762 perm/sec)   p_kst 3.966805e-04   p_cons 1.138133e-02   p_joint 3.423237e-04

Joint ci ratio: 1.361239e-01	ci left: 3.192412e-04	ci right 3.662655e-04	k: 828	n:2420000
Cons ci ratio: 2.348393e-02	ci left: 1.124896e-02	ci right 1.151667e-02	k: 27545	n:2420000
KS ci ratio: 1.264923e-01	ci left: 3.715983e-04	ci right 4.221717e-04	k: 959	n:2420000
STK11   2420000 perm   3186 sec   (760 perm/sec)   p_kst 3.962810e-04   p_cons 1.138223e-02   p_joint 3.421488e-04

Joint ci ratio: 1.357152e-01	ci left: 3.199151e-04	ci right 3.668857e-04	k: 833	n:2430000
Cons ci ratio: 2.343377e-02	ci left: 1.125094e-02	ci right 1.151812e-02	k: 27663	n:2430000
KS ci ratio: 1.261642e-01	ci left: 3.720617e-04	ci right 4.225570e-04	k: 964	n:2430000
STK11   2430000 perm   3210 sec   (757 perm/sec)   p_kst 3.967078e-04   p_cons 1.138395e-02   p_joint 3.427984e-04

Joint ci ratio: 1.352295e-01	ci left: 3.209797e-04	ci right 3.679244e-04	k: 839	n:2440000
Cons ci ratio: 2.338819e-02	ci left: 1.124884e-02	ci right 1.151544e-02	k: 27771	n:2440000
KS ci ratio: 1.257737e-01	ci left: 3.729184e-04	ci right 4.233616e-04	k: 970	n:2440000
STK11   2440000 perm   3233 sec   (755 perm/sec)   p_kst 3.975410e-04   p_cons 1.138156e-02   p_joint 3.438525e-04

Joint ci ratio: 1.368694e-01	ci left: 3.117841e-04	ci right 3.579818e-04	k: 819	n:2450000
Cons ci ratio: 2.334245e-02	ci left: 1.124715e-02	ci right 1.151319e-02	k: 27880	n:2450000
KS ci ratio: 1.254511e-01	ci left: 3.733730e-04	ci right 4.237385e-04	k: 975	n:2450000
STK11   2450000 perm   3257 sec   (752 perm/sec)   p_kst 3.979592e-04   p_cons 1.137959e-02   p_joint 3.342857e-04

Joint ci ratio: 1.364540e-01	ci left: 3.124797e-04	ci right 3.586286e-04	k: 824	n:2460000
Cons ci ratio: 2.329572e-02	ci left: 1.124669e-02	ci right 1.151218e-02	k: 27992	n:2460000
KS ci ratio: 1.250672e-01	ci left: 3.742178e-04	ci right 4.245314e-04	k: 981	n:2460000
STK11   2460000 perm   3281 sec   (750 perm/sec)   p_kst 3.987805e-04   p_cons 1.137886e-02   p_joint 3.349593e-04

Joint ci ratio: 1.362889e-01	ci left: 3.119967e-04	ci right 3.580140e-04	k: 826	n:2470000
Cons ci ratio: 2.325345e-02	ci left: 1.124222e-02	ci right 1.150711e-02	k: 28094	n:2470000
KS ci ratio: 1.248133e-01	ci left: 3.742716e-04	ci right 4.244827e-04	k: 985	n:2470000
STK11   2470000 perm   3305 sec   (747 perm/sec)   p_kst 3.987854e-04   p_cons 1.137409e-02   p_joint 3.344130e-04

Joint ci ratio: 1.359605e-01	ci left: 3.122966e-04	ci right 3.582382e-04	k: 830	n:2480000
Cons ci ratio: 2.320933e-02	ci left: 1.123978e-02	ci right 1.150411e-02	k: 28201	n:2480000
KS ci ratio: 1.246239e-01	ci left: 3.739344e-04	ci right 4.240185e-04	k: 988	n:2480000
STK11   2480000 perm   3329 sec   (745 perm/sec)   p_kst 3.983871e-04   p_cons 1.137137e-02   p_joint 3.346774e-04

Joint ci ratio: 1.357972e-01	ci left: 3.118183e-04	ci right 3.576300e-04	k: 832	n:2490000
Cons ci ratio: 2.316463e-02	ci left: 1.123816e-02	ci right 1.150193e-02	k: 28310	n:2490000
KS ci ratio: 1.244353e-01	ci left: 3.735999e-04	ci right 4.235579e-04	k: 991	n:2490000
STK11   2490000 perm   3353 sec   (743 perm/sec)   p_kst 3.979920e-04   p_cons 1.136948e-02   p_joint 3.341365e-04

Joint ci ratio: 1.354723e-01	ci left: 3.121167e-04	ci right 3.578537e-04	k: 836	n:2500000
Cons ci ratio: 2.312018e-02	ci left: 1.123656e-02	ci right 1.149978e-02	k: 28419	n:2500000
KS ci ratio: 1.241852e-01	ci left: 3.736557e-04	ci right 4.235134e-04	k: 995	n:2500000
STK11   2500000 perm   3377 sec   (740 perm/sec)   p_kst 3.980000e-04   p_cons 1.136760e-02   p_joint 3.344000e-04

Joint ci ratio: 1.350694e-01	ci left: 3.127979e-04	ci right 3.584874e-04	k: 841	n:2510000
Cons ci ratio: 2.307845e-02	ci left: 1.123259e-02	ci right 1.149524e-02	k: 28522	n:2510000
KS ci ratio: 1.239366e-01	ci left: 3.737112e-04	ci right 4.234692e-04	k: 999	n:2510000
STK11   2510000 perm   3401 sec   (738 perm/sec)   p_kst 3.980080e-04   p_cons 1.136335e-02   p_joint 3.350598e-04

Joint ci ratio: 1.345907e-01	ci left: 3.138573e-04	ci right 3.595260e-04	k: 847	n:2520000
Cons ci ratio: 2.303694e-02	ci left: 1.122865e-02	ci right 1.149073e-02	k: 28625	n:2520000
KS ci ratio: 1.235050e-01	ci left: 3.749201e-04	ci right 4.246524e-04	k: 1006	n:2520000
STK11   2520000 perm   3426 sec   (736 perm/sec)   p_kst 3.992063e-04   p_cons 1.135913e-02   p_joint 3.361111e-04

Joint ci ratio: 1.345908e-01	ci left: 3.126167e-04	ci right 3.581050e-04	k: 847	n:2530000
Cons ci ratio: 2.299687e-02	ci left: 1.122357e-02	ci right 1.148506e-02	k: 28725	n:2530000
KS ci ratio: 1.234438e-01	ci left: 3.738212e-04	ci right 4.233814e-04	k: 1007	n:2530000
STK11   2530000 perm   3450 sec   (733 perm/sec)   p_kst 3.980237e-04   p_cons 1.135375e-02   p_joint 3.347826e-04

Joint ci ratio: 1.340386e-01	ci left: 3.140492e-04	ci right 3.595436e-04	k: 854	n:2540000
Cons ci ratio: 2.295379e-02	ci left: 1.122165e-02	ci right 1.148261e-02	k: 28833	n:2540000
KS ci ratio: 1.231387e-01	ci left: 3.742573e-04	ci right 4.237437e-04	k: 1012	n:2540000
STK11   2540000 perm   3475 sec   (731 perm/sec)   p_kst 3.984252e-04   p_cons 1.135157e-02   p_joint 3.362205e-04

Joint ci ratio: 1.338821e-01	ci left: 3.135757e-04	ci right 3.589442e-04	k: 856	n:2550000
Cons ci ratio: 2.291055e-02	ci left: 1.122015e-02	ci right 1.148057e-02	k: 28942	n:2550000
KS ci ratio: 1.230174e-01	ci left: 3.735498e-04	ci right 4.228905e-04	k: 1014	n:2550000
STK11   2550000 perm   3500 sec   (729 perm/sec)   p_kst 3.976471e-04   p_cons 1.134980e-02   p_joint 3.356863e-04

Joint ci ratio: 1.336484e-01	ci left: 3.134835e-04	ci right 3.587531e-04	k: 859	n:2560000
Cons ci ratio: 2.286675e-02	ci left: 1.121943e-02	ci right 1.147933e-02	k: 29053	n:2560000
KS ci ratio: 1.227757e-01	ci left: 3.736051e-04	ci right 4.228491e-04	k: 1018	n:2560000
STK11   2560000 perm   3525 sec   (726 perm/sec)   p_kst 3.976563e-04   p_cons 1.134883e-02   p_joint 3.355469e-04

Joint ci ratio: 1.332615e-01	ci left: 3.141443e-04	ci right 3.593676e-04	k: 864	n:2570000
Cons ci ratio: 2.282123e-02	ci left: 1.122065e-02	ci right 1.148006e-02	k: 29169	n:2570000
KS ci ratio: 1.223561e-01	ci left: 3.747916e-04	ci right 4.240109e-04	k: 1025	n:2570000
STK11   2570000 perm   3550 sec   (724 perm/sec)   p_kst 3.988327e-04   p_cons 1.134981e-02   p_joint 3.361868e-04

Joint ci ratio: 1.331078e-01	ci left: 3.136760e-04	ci right 3.587757e-04	k: 866	n:2580000
Cons ci ratio: 2.278345e-02	ci left: 1.121454e-02	ci right 1.147338e-02	k: 29266	n:2580000
KS ci ratio: 1.222371e-01	ci left: 3.740904e-04	ci right 4.231664e-04	k: 1027	n:2580000
STK11   2580000 perm   3576 sec   (722 perm/sec)   p_kst 3.980620e-04   p_cons 1.134341e-02   p_joint 3.356589e-04

Joint ci ratio: 1.330311e-01	ci left: 3.128381e-04	ci right 3.577895e-04	k: 867	n:2590000
Cons ci ratio: 2.275057e-02	ci left: 1.120388e-02	ci right 1.146208e-02	k: 29351	n:2590000
KS ci ratio: 1.220591e-01	ci left: 3.737689e-04	ci right 4.227262e-04	k: 1030	n:2590000
STK11   2590000 perm   3601 sec   (719 perm/sec)   p_kst 3.976834e-04   p_cons 1.133243e-02   p_joint 3.347490e-04

Joint ci ratio: 1.328782e-01	ci left: 3.123785e-04	ci right 3.572082e-04	k: 869	n:2600000
Cons ci ratio: 2.270300e-02	ci left: 1.120782e-02	ci right 1.146557e-02	k: 29474	n:2600000
KS ci ratio: 1.219409e-01	ci left: 3.730771e-04	ci right 4.218930e-04	k: 1032	n:2600000
STK11   2600000 perm   3627 sec   (717 perm/sec)   p_kst 3.969231e-04   p_cons 1.133615e-02   p_joint 3.342308e-04

Joint ci ratio: 1.327257e-01	ci left: 3.119225e-04	ci right 3.566313e-04	k: 871	n:2610000
Cons ci ratio: 2.265961e-02	ci left: 1.120793e-02	ci right 1.146519e-02	k: 29587	n:2610000
KS ci ratio: 1.217643e-01	ci left: 3.727621e-04	ci right 4.214610e-04	k: 1035	n:2610000
STK11   2610000 perm   3652 sec   (715 perm/sec)   p_kst 3.965517e-04   p_cons 1.133602e-02   p_joint 3.337165e-04

Joint ci ratio: 1.325738e-01	ci left: 3.114700e-04	ci right 3.560588e-04	k: 873	n:2620000
Cons ci ratio: 2.261416e-02	ci left: 1.121032e-02	ci right 1.146710e-02	k: 29706	n:2620000
KS ci ratio: 1.215884e-01	ci left: 3.724495e-04	ci right 4.210323e-04	k: 1038	n:2620000
STK11   2620000 perm   3678 sec   (712 perm/sec)   p_kst 3.961832e-04   p_cons 1.133817e-02   p_joint 3.332061e-04

Joint ci ratio: 1.323469e-01	ci left: 3.113886e-04	ci right 3.558834e-04	k: 876	n:2630000
Cons ci ratio: 2.257089e-02	ci left: 1.121079e-02	ci right 1.146709e-02	k: 29820	n:2630000
KS ci ratio: 1.213550e-01	ci left: 3.725080e-04	ci right 4.209985e-04	k: 1042	n:2630000
STK11   2630000 perm   3704 sec   (710 perm/sec)   p_kst 3.961977e-04   p_cons 1.133840e-02   p_joint 3.330798e-04

Joint ci ratio: 1.319712e-01	ci left: 3.120404e-04	ci right 3.564919e-04	k: 881	n:2640000
Cons ci ratio: 2.252482e-02	ci left: 1.121428e-02	ci right 1.147013e-02	k: 29942	n:2640000
KS ci ratio: 1.210074e-01	ci left: 3.733009e-04	ci right 4.217454e-04	k: 1048	n:2640000
STK11   2640000 perm   3729 sec   (708 perm/sec)   p_kst 3.969697e-04   p_cons 1.134167e-02   p_joint 3.337121e-04

Joint ci ratio: 1.317473e-01	ci left: 3.119576e-04	ci right 3.563160e-04	k: 884	n:2650000
Cons ci ratio: 2.248471e-02	ci left: 1.121211e-02	ci right 1.146745e-02	k: 30049	n:2650000
KS ci ratio: 1.208923e-01	ci left: 3.726241e-04	ci right 4.209314e-04	k: 1050	n:2650000
STK11   2650000 perm   3755 sec   (706 perm/sec)   p_kst 3.962264e-04   p_cons 1.133925e-02   p_joint 3.335849e-04

Joint ci ratio: 1.315246e-01	ci left: 3.118755e-04	ci right 3.561414e-04	k: 887	n:2660000
Cons ci ratio: 2.243842e-02	ci left: 1.121632e-02	ci right 1.147122e-02	k: 30173	n:2660000
KS ci ratio: 1.206057e-01	ci left: 3.730462e-04	ci right 4.212854e-04	k: 1055	n:2660000
STK11   2660000 perm   3780 sec   (704 perm/sec)   p_kst 3.966165e-04   p_cons 1.134323e-02   p_joint 3.334586e-04

Joint ci ratio: 1.313768e-01	ci left: 3.114319e-04	ci right 3.555812e-04	k: 889	n:2670000
Cons ci ratio: 2.239503e-02	ci left: 1.121788e-02	ci right 1.147232e-02	k: 30290	n:2670000
KS ci ratio: 1.204917e-01	ci left: 3.723754e-04	ci right 4.204792e-04	k: 1057	n:2670000
STK11   2670000 perm   3807 sec   (701 perm/sec)   p_kst 3.958801e-04   p_cons 1.134457e-02   p_joint 3.329588e-04

Joint ci ratio: 1.311559e-01	ci left: 3.113525e-04	ci right 3.554106e-04	k: 892	n:2680000
Cons ci ratio: 2.235040e-02	ci left: 1.122092e-02	ci right 1.147491e-02	k: 30411	n:2680000
KS ci ratio: 1.203780e-01	ci left: 3.717098e-04	ci right 4.196790e-04	k: 1059	n:2680000
STK11   2680000 perm   3833 sec   (699 perm/sec)   p_kst 3.951493e-04   p_cons 1.134739e-02   p_joint 3.328358e-04

Joint ci ratio: 1.329554e-01	ci left: 3.015677e-04	ci right 3.448730e-04	k: 868	n:2690000
Cons ci ratio: 2.230604e-02	ci left: 1.122394e-02	ci right 1.147749e-02	k: 30532	n:2690000
KS ci ratio: 1.200387e-01	ci left: 3.724914e-04	ci right 4.204164e-04	k: 1065	n:2690000
STK11   2690000 perm   3859 sec   (697 perm/sec)   p_kst 3.959108e-04   p_cons 1.135019e-02   p_joint 3.226766e-04

Joint ci ratio: 1.328027e-01	ci left: 3.011669e-04	ci right 3.443610e-04	k: 870	n:2700000
Cons ci ratio: 2.226818e-02	ci left: 1.122067e-02	ci right 1.147371e-02	k: 30636	n:2700000
KS ci ratio: 1.199263e-01	ci left: 3.718303e-04	ci right 4.196223e-04	k: 1067	n:2700000
STK11   2700000 perm   3885 sec   (695 perm/sec)   p_kst 3.951852e-04   p_cons 1.134667e-02   p_joint 3.222222e-04

Joint ci ratio: 1.326505e-01	ci left: 3.007691e-04	ci right 3.438528e-04	k: 872	n:2710000
Cons ci ratio: 2.222979e-02	ci left: 1.121816e-02	ci right 1.147071e-02	k: 30742	n:2710000
KS ci ratio: 1.197024e-01	ci left: 3.718900e-04	ci right 4.195941e-04	k: 1071	n:2710000
STK11   2710000 perm   3910 sec   (693 perm/sec)   p_kst 3.952030e-04   p_cons 1.134391e-02   p_joint 3.217712e-04

Joint ci ratio: 1.351515e-01	ci left: 2.882926e-04	ci right 3.304303e-04	k: 840	n:2720000
Cons ci ratio: 2.219123e-02	ci left: 1.121604e-02	ci right 1.146809e-02	k: 30849	n:2720000
KS ci ratio: 1.195909e-01	ci left: 3.712360e-04	ci right 4.188088e-04	k: 1073	n:2720000
STK11   2720000 perm   3937 sec   (691 perm/sec)   p_kst 3.944853e-04   p_cons 1.134154e-02   p_joint 3.088235e-04

Joint ci ratio: 1.361265e-01	ci left: 2.829900e-04	ci right 3.246753e-04	k: 828	n:2730000
Cons ci ratio: 2.214673e-02	ci left: 1.122012e-02	ci right 1.147176e-02	k: 30973	n:2730000
KS ci ratio: 1.193688e-01	ci left: 3.712976e-04	ci right 4.187836e-04	k: 1077	n:2730000
STK11   2730000 perm   3963 sec   (689 perm/sec)   p_kst 3.945055e-04   p_cons 1.134542e-02   p_joint 3.032967e-04

Joint ci ratio: 1.361266e-01	ci left: 2.819572e-04	ci right 3.234904e-04	k: 828	n:2740000
Cons ci ratio: 2.210285e-02	ci left: 1.122382e-02	ci right 1.147503e-02	k: 31096	n:2740000
KS ci ratio: 1.192031e-01	ci left: 3.710047e-04	ci right 4.183828e-04	k: 1080	n:2740000
STK11   2740000 perm   3989 sec   (687 perm/sec)   p_kst 3.941606e-04   p_cons 1.134891e-02   p_joint 3.021898e-04

Joint ci ratio: 1.360446e-01	ci left: 2.812832e-04	ci right 3.226901e-04	k: 829	n:2750000
Cons ci ratio: 2.206280e-02	ci left: 1.122387e-02	ci right 1.147462e-02	k: 31209	n:2750000
KS ci ratio: 1.190930e-01	ci left: 3.703612e-04	ci right 4.176103e-04	k: 1082	n:2750000
STK11   2750000 perm   4016 sec   (685 perm/sec)   p_kst 3.934545e-04   p_cons 1.134873e-02   p_joint 3.014545e-04

Joint ci ratio: 1.372071e-01	ci left: 2.753649e-04	ci right 3.162752e-04	k: 815	n:2760000
Cons ci ratio: 2.202155e-02	ci left: 1.122536e-02	ci right 1.147567e-02	k: 31326	n:2760000
KS ci ratio: 1.187099e-01	ci left: 3.714801e-04	ci right 4.187089e-04	k: 1089	n:2760000
STK11   2760000 perm   4042 sec   (683 perm/sec)   p_kst 3.945652e-04   p_cons 1.135000e-02   p_joint 2.952899e-04

Joint ci ratio: 1.369556e-01	ci left: 2.754167e-04	ci right 3.162536e-04	k: 818	n:2770000
Cons ci ratio: 2.198194e-02	ci left: 1.122540e-02	ci right 1.147526e-02	k: 31439	n:2770000
KS ci ratio: 1.186012e-01	ci left: 3.708396e-04	ci right 4.179407e-04	k: 1091	n:2770000
STK11   2770000 perm   4069 sec   (681 perm/sec)   p_kst 3.938628e-04   p_cons 1.134982e-02   p_joint 2.953069e-04

Joint ci ratio: 1.209510e-01	ci left: 3.548502e-04	ci right 4.008772e-04	k: 1049	n:2780000
Cons ci ratio: 2.194395e-02	ci left: 1.122402e-02	ci right 1.147340e-02	k: 31548	n:2780000
KS ci ratio: 1.184386e-01	ci left: 3.705528e-04	ci right 4.175485e-04	k: 1094	n:2780000
STK11   2780000 perm   4096 sec   (679 perm/sec)   p_kst 3.935252e-04   p_cons 1.134820e-02   p_joint 3.773381e-04

Joint ci ratio: 1.207786e-01	ci left: 3.546211e-04	ci right 4.005482e-04	k: 1052	n:2790000
Cons ci ratio: 2.190511e-02	ci left: 1.122371e-02	ci right 1.147264e-02	k: 31660	n:2790000
KS ci ratio: 1.183307e-01	ci left: 3.699203e-04	ci right 4.167899e-04	k: 1096	n:2790000
STK11   2790000 perm   4123 sec   (677 perm/sec)   p_kst 3.928315e-04   p_cons 1.134767e-02   p_joint 3.770609e-04

Joint ci ratio: 1.203790e-01	ci left: 3.557792e-04	ci right 4.016930e-04	k: 1059	n:2800000
Cons ci ratio: 2.186612e-02	ci left: 1.122376e-02	ci right 1.147225e-02	k: 31773	n:2800000
KS ci ratio: 1.179549e-01	ci left: 3.710253e-04	ci right 4.178752e-04	k: 1103	n:2800000
STK11   2800000 perm   4150 sec   (675 perm/sec)   p_kst 3.939286e-04   p_cons 1.134750e-02   p_joint 3.782143e-04

Joint ci ratio: 1.202657e-01	ci left: 3.552034e-04	ci right 4.009967e-04	k: 1061	n:2810000
Cons ci ratio: 2.183254e-02	ci left: 1.121851e-02	ci right 1.146649e-02	k: 31871	n:2810000
KS ci ratio: 1.176886e-01	ci left: 3.714318e-04	ci right 4.182199e-04	k: 1108	n:2810000
STK11   2810000 perm   4177 sec   (673 perm/sec)   p_kst 3.943060e-04   p_cons 1.134199e-02   p_joint 3.775801e-04

Joint ci ratio: 1.202091e-01	ci left: 3.542877e-04	ci right 3.999400e-04	k: 1062	n:2820000
Cons ci ratio: 2.179188e-02	ci left: 1.122069e-02	ci right 1.146825e-02	k: 31990	n:2820000
KS ci ratio: 1.176887e-01	ci left: 3.701147e-04	ci right 4.167369e-04	k: 1108	n:2820000
STK11   2820000 perm   4204 sec   (671 perm/sec)   p_kst 3.929078e-04   p_cons 1.134397e-02   p_joint 3.765957e-04

Joint ci ratio: 1.199274e-01	ci left: 3.547495e-04	ci right 4.003466e-04	k: 1067	n:2830000
Cons ci ratio: 2.174835e-02	ci left: 1.122603e-02	ci right 1.147321e-02	k: 32118	n:2830000
KS ci ratio: 1.172664e-01	ci left: 3.715506e-04	ci right 4.181742e-04	k: 1116	n:2830000
STK11   2830000 perm   4231 sec   (669 perm/sec)   p_kst 3.943463e-04   p_cons 1.134912e-02   p_joint 3.770318e-04

Joint ci ratio: 1.196476e-01	ci left: 3.552082e-04	ci right 4.007502e-04	k: 1072	n:2840000
Cons ci ratio: 2.171088e-02	ci left: 1.122537e-02	ci right 1.147210e-02	k: 32229	n:2840000
KS ci ratio: 1.168486e-01	ci left: 3.729768e-04	ci right 4.196010e-04	k: 1124	n:2840000
STK11   2840000 perm   4258 sec   (667 perm/sec)   p_kst 3.957746e-04   p_cons 1.134824e-02   p_joint 3.774648e-04

Joint ci ratio: 1.193698e-01	ci left: 3.556638e-04	ci right 4.011508e-04	k: 1077	n:2850000
Cons ci ratio: 2.167767e-02	ci left: 1.122053e-02	ci right 1.146678e-02	k: 32328	n:2850000
KS ci ratio: 1.166415e-01	ci left: 3.730306e-04	ci right 4.195732e-04	k: 1128	n:2850000
STK11   2850000 perm   4285 sec   (665 perm/sec)   p_kst 3.957895e-04   p_cons 1.134316e-02   p_joint 3.778947e-04

Joint ci ratio: 1.191489e-01	ci left: 3.557771e-04	ci right 4.011885e-04	k: 1081	n:2860000
Cons ci ratio: 2.163516e-02	ci left: 1.122547e-02	ci right 1.147133e-02	k: 32455	n:2860000
KS ci ratio: 1.163840e-01	ci left: 3.734237e-04	ci right 4.199054e-04	k: 1133	n:2860000
STK11   2860000 perm   4313 sec   (663 perm/sec)   p_kst 3.961538e-04   p_cons 1.134790e-02   p_joint 3.779720e-04

Joint ci ratio: 1.190390e-01	ci left: 3.552136e-04	ci right 4.005083e-04	k: 1083	n:2870000
Cons ci ratio: 2.159794e-02	ci left: 1.122517e-02	ci right 1.147059e-02	k: 32567	n:2870000
KS ci ratio: 1.162304e-01	ci left: 3.731374e-04	ci right 4.195180e-04	k: 1136	n:2870000
STK11   2870000 perm   4341 sec   (661 perm/sec)   p_kst 3.958188e-04   p_cons 1.134739e-02   p_joint 3.773519e-04

Joint ci ratio: 1.189294e-01	ci left: 3.546540e-04	ci right 3.998327e-04	k: 1085	n:2880000
Cons ci ratio: 2.156691e-02	ci left: 1.121865e-02	ci right 1.146358e-02	k: 32661	n:2880000
KS ci ratio: 1.161283e-01	ci left: 3.725160e-04	ci right 4.187759e-04	k: 1138	n:2880000
STK11   2880000 perm   4369 sec   (659 perm/sec)   p_kst 3.951389e-04   p_cons 1.134063e-02   p_joint 3.767361e-04

Joint ci ratio: 1.233856e-01	ci left: 3.275901e-04	ci right 3.709992e-04	k: 1008	n:2890000
Cons ci ratio: 2.152173e-02	ci left: 1.122698e-02	ci right 1.147158e-02	k: 32798	n:2890000
KS ci ratio: 1.156721e-01	ci left: 3.742510e-04	ci right 4.205313e-04	k: 1147	n:2890000
STK11   2890000 perm   4397 sec   (657 perm/sec)   p_kst 3.968858e-04   p_cons 1.134879e-02   p_joint 3.487889e-04

Joint ci ratio: 1.232026e-01	ci left: 3.274631e-04	ci right 3.707862e-04	k: 1011	n:2900000
Cons ci ratio: 2.148475e-02	ci left: 1.122703e-02	ci right 1.147119e-02	k: 32911	n:2900000
KS ci ratio: 1.154711e-01	ci left: 3.742999e-04	ci right 4.205004e-04	k: 1151	n:2900000
STK11   2900000 perm   4425 sec   (655 perm/sec)   p_kst 3.968966e-04   p_cons 1.134862e-02   p_joint 3.486207e-04

Joint ci ratio: 1.232027e-01	ci left: 3.263378e-04	ci right 3.695121e-04	k: 1011	n:2910000
Cons ci ratio: 2.144698e-02	ci left: 1.122809e-02	ci right 1.147185e-02	k: 33027	n:2910000
KS ci ratio: 1.154211e-01	ci left: 3.733474e-04	ci right 4.194089e-04	k: 1152	n:2910000
STK11   2910000 perm   4453 sec   (653 perm/sec)   p_kst 3.958763e-04   p_cons 1.134948e-02   p_joint 3.474227e-04

Joint ci ratio: 1.230812e-01	ci left: 3.258840e-04	ci right 3.689526e-04	k: 1013	n:2920000
Cons ci ratio: 2.141072e-02	ci left: 1.122779e-02	ci right 1.147112e-02	k: 33139	n:2920000
KS ci ratio: 1.152713e-01	ci left: 3.730665e-04	ci right 4.190296e-04	k: 1155	n:2920000
STK11   2920000 perm   4481 sec   (652 perm/sec)   p_kst 3.955479e-04   p_cons 1.134897e-02   p_joint 3.469178e-04

Joint ci ratio: 1.226584e-01	ci left: 3.270874e-04	ci right 3.701559e-04	k: 1020	n:2930000
Cons ci ratio: 2.137626e-02	ci left: 1.122579e-02	ci right 1.146869e-02	k: 33246	n:2930000
KS ci ratio: 1.150724e-01	ci left: 3.731191e-04	ci right 4.190040e-04	k: 1159	n:2930000
STK11   2930000 perm   4509 sec   (650 perm/sec)   p_kst 3.955631e-04   p_cons 1.134676e-02   p_joint 3.481229e-04

Joint ci ratio: 1.272951e-01	ci left: 3.019207e-04	ci right 3.432916e-04	k: 947	n:2940000
Cons ci ratio: 2.133841e-02	ci left: 1.122753e-02	ci right 1.147003e-02	k: 33364	n:2940000
KS ci ratio: 1.150228e-01	ci left: 3.721804e-04	ci right 4.179287e-04	k: 1160	n:2940000
STK11   2940000 perm   4537 sec   (648 perm/sec)   p_kst 3.945578e-04   p_cons 1.134830e-02   p_joint 3.221088e-04

Joint ci ratio: 1.283147e-01	ci left: 2.959750e-04	ci right 3.368808e-04	k: 932	n:2950000
Cons ci ratio: 2.130108e-02	ci left: 1.122892e-02	ci right 1.147102e-02	k: 33481	n:2950000
KS ci ratio: 1.146285e-01	ci left: 3.735527e-04	ci right 4.193017e-04	k: 1168	n:2950000
STK11   2950000 perm   4566 sec   (646 perm/sec)   p_kst 3.959322e-04   p_cons 1.134949e-02   p_joint 3.159322e-04

Joint ci ratio: 1.280405e-01	ci left: 2.962831e-04	ci right 3.371373e-04	k: 936	n:2960000
Cons ci ratio: 2.126299e-02	ci left: 1.123131e-02	ci right 1.147302e-02	k: 33601	n:2960000
KS ci ratio: 1.144817e-01	ci left: 3.732752e-04	ci right 4.189277e-04	k: 1171	n:2960000
STK11   2960000 perm   4594 sec   (644 perm/sec)   p_kst 3.956081e-04   p_cons 1.135169e-02   p_joint 3.162162e-04

Joint ci ratio: 1.280406e-01	ci left: 2.952855e-04	ci right 3.360022e-04	k: 936	n:2970000
Cons ci ratio: 2.123115e-02	ci left: 1.122732e-02	ci right 1.146858e-02	k: 33702	n:2970000
KS ci ratio: 1.143842e-01	ci left: 3.726725e-04	ci right 4.182098e-04	k: 1173	n:2970000
STK11   2970000 perm   4623 sec   (642 perm/sec)   p_kst 3.949495e-04   p_cons 1.134747e-02   p_joint 3.151515e-04

Joint ci ratio: 1.278361e-01	ci left: 2.952691e-04	ci right 3.359136e-04	k: 939	n:2980000
Cons ci ratio: 2.119692e-02	ci left: 1.122603e-02	ci right 1.146687e-02	k: 33811	n:2980000
KS ci ratio: 1.143356e-01	ci left: 3.717479e-04	ci right 4.171516e-04	k: 1174	n:2980000
STK11   2980000 perm   4651 sec   (641 perm/sec)   p_kst 3.939597e-04   p_cons 1.134597e-02   p_joint 3.151007e-04

Joint ci ratio: 1.277682e-01	ci left: 2.946053e-04	ci right 3.351352e-04	k: 940	n:2990000
Cons ci ratio: 2.116285e-02	ci left: 1.122475e-02	ci right 1.146516e-02	k: 33920	n:2990000
KS ci ratio: 1.143357e-01	ci left: 3.705046e-04	ci right 4.157565e-04	k: 1174	n:2990000
STK11   2990000 perm   4680 sec   (639 perm/sec)   p_kst 3.926421e-04   p_cons 1.134448e-02   p_joint 3.143813e-04

Joint ci ratio: 1.277683e-01	ci left: 2.936233e-04	ci right 3.340181e-04	k: 940	n:3000000
Cons ci ratio: 2.112612e-02	ci left: 1.122646e-02	ci right 1.146649e-02	k: 34038	n:3000000
KS ci ratio: 1.142871e-01	ci left: 3.695933e-04	ci right 4.147135e-04	k: 1175	n:3000000
STK11   3000000 perm   4708 sec   (637 perm/sec)   p_kst 3.916667e-04   p_cons 1.134600e-02   p_joint 3.133333e-04

Joint ci ratio: 1.276327e-01	ci left: 2.932910e-04	ci right 3.335941e-04	k: 942	n:3010000
Cons ci ratio: 2.108552e-02	ci left: 1.123245e-02	ci right 1.147214e-02	k: 34169	n:3010000
KS ci ratio: 1.141416e-01	ci left: 3.693336e-04	ci right 4.143609e-04	k: 1178	n:3010000
STK11   3010000 perm   4737 sec   (635 perm/sec)   p_kst 3.913621e-04   p_cons 1.135183e-02   p_joint 3.129568e-04

Joint ci ratio: 1.275652e-01	ci left: 2.926404e-04	ci right 3.328312e-04	k: 943	n:3020000
Cons ci ratio: 2.104454e-02	ci left: 1.123907e-02	ci right 1.147843e-02	k: 34302	n:3020000
KS ci ratio: 1.139967e-01	ci left: 3.690757e-04	ci right 4.140105e-04	k: 1181	n:3020000
STK11   3020000 perm   4769 sec   (633 perm/sec)   p_kst 3.910596e-04   p_cons 1.135828e-02   p_joint 3.122517e-04

Joint ci ratio: 1.273630e-01	ci left: 2.926331e-04	ci right 3.327544e-04	k: 946	n:3030000
Cons ci ratio: 2.101089e-02	ci left: 1.123809e-02	ci right 1.147704e-02	k: 34412	n:3030000
KS ci ratio: 1.139004e-01	ci left: 3.684989e-04	ci right 4.133230e-04	k: 1183	n:3030000
STK11   3030000 perm   4798 sec   (631 perm/sec)   p_kst 3.904290e-04   p_cons 1.135710e-02   p_joint 3.122112e-04

Joint ci ratio: 1.270280e-01	ci left: 2.932629e-04	ci right 3.333568e-04	k: 951	n:3040000
Cons ci ratio: 2.097463e-02	ci left: 1.124006e-02	ci right 1.147864e-02	k: 34531	n:3040000
KS ci ratio: 1.135651e-01	ci left: 3.695239e-04	ci right 4.143315e-04	k: 1190	n:3040000
STK11   3040000 perm   4827 sec   (630 perm/sec)   p_kst 3.914474e-04   p_cons 1.135888e-02   p_joint 3.128289e-04

Joint ci ratio: 1.269614e-01	ci left: 2.926189e-04	ci right 3.326022e-04	k: 952	n:3050000
Cons ci ratio: 2.093735e-02	ci left: 1.124332e-02	ci right 1.148154e-02	k: 34654	n:3050000
KS ci ratio: 1.134699e-01	ci left: 3.689494e-04	ci right 4.136474e-04	k: 1192	n:3050000
STK11   3050000 perm   4857 sec   (628 perm/sec)   p_kst 3.908197e-04   p_cons 1.136197e-02   p_joint 3.121311e-04

Joint ci ratio: 1.268284e-01	ci left: 2.922954e-04	ci right 3.321896e-04	k: 954	n:3060000
Cons ci ratio: 2.089934e-02	ci left: 1.124754e-02	ci right 1.148541e-02	k: 34780	n:3060000
KS ci ratio: 1.133750e-01	ci left: 3.683788e-04	ci right 4.129677e-04	k: 1194	n:3060000
STK11   3060000 perm   4886 sec   (626 perm/sec)   p_kst 3.901961e-04   p_cons 1.136601e-02   p_joint 3.117647e-04

Joint ci ratio: 1.266297e-01	ci left: 2.922895e-04	ci right 3.321157e-04	k: 957	n:3070000
Cons ci ratio: 2.086911e-02	ci left: 1.124363e-02	ci right 1.148107e-02	k: 34881	n:3070000
KS ci ratio: 1.131857e-01	ci left: 3.684448e-04	ci right 4.129624e-04	k: 1198	n:3070000
STK11   3070000 perm   4916 sec   (625 perm/sec)   p_kst 3.902280e-04   p_cons 1.136189e-02   p_joint 3.117264e-04

Joint ci ratio: 1.264977e-01	ci left: 2.919693e-04	ci right 3.317073e-04	k: 959	n:3080000
Cons ci ratio: 2.082847e-02	ci left: 1.125105e-02	ci right 1.148818e-02	k: 35017	n:3080000
KS ci ratio: 1.130915e-01	ci left: 3.678796e-04	ci right 4.122893e-04	k: 1200	n:3080000
STK11   3080000 perm   4945 sec   (623 perm/sec)   p_kst 3.896104e-04   p_cons 1.136916e-02   p_joint 3.113636e-04

Joint ci ratio: 1.263662e-01	ci left: 2.916512e-04	ci right 3.313015e-04	k: 961	n:3090000
Cons ci ratio: 2.079644e-02	ci left: 1.124941e-02	ci right 1.148613e-02	k: 35125	n:3090000
KS ci ratio: 1.129036e-01	ci left: 3.679469e-04	ci right 4.122861e-04	k: 1204	n:3090000
STK11   3090000 perm   4975 sec   (621 perm/sec)   p_kst 3.896440e-04   p_cons 1.136731e-02   p_joint 3.110032e-04

Joint ci ratio: 1.281784e-01	ci left: 2.822779e-04	ci right 3.212461e-04	k: 934	n:3100000
Cons ci ratio: 2.076188e-02	ci left: 1.125067e-02	ci right 1.148702e-02	k: 35242	n:3100000
KS ci ratio: 1.127167e-01	ci left: 3.680139e-04	ci right 4.122829e-04	k: 1208	n:3100000
STK11   3100000 perm   5005 sec   (619 perm/sec)   p_kst 3.896774e-04   p_cons 1.136839e-02   p_joint 3.012903e-04

Joint ci ratio: 1.280415e-01	ci left: 2.819928e-04	ci right 3.208768e-04	k: 936	n:3110000
Cons ci ratio: 2.072394e-02	ci left: 1.125576e-02	ci right 1.149178e-02	k: 35371	n:3110000
KS ci ratio: 1.126701e-01	ci left: 3.671431e-04	ci right 4.112878e-04	k: 1209	n:3110000
STK11   3110000 perm   5035 sec   (618 perm/sec)   p_kst 3.887460e-04   p_cons 1.137331e-02   p_joint 3.009646e-04

Joint ci ratio: 1.277012e-01	ci left: 2.826403e-04	ci right 3.215022e-04	k: 941	n:3120000
Cons ci ratio: 2.069121e-02	ci left: 1.125539e-02	ci right 1.149103e-02	k: 35483	n:3120000
KS ci ratio: 1.124380e-01	ci left: 3.675238e-04	ci right 4.116173e-04	k: 1214	n:3120000
STK11   3120000 perm   5064 sec   (616 perm/sec)   p_kst 3.891026e-04   p_cons 1.137276e-02   p_joint 3.016026e-04

Joint ci ratio: 1.274983e-01	ci left: 2.826651e-04	ci right 3.214640e-04	k: 944	n:3130000
Cons ci ratio: 2.066128e-02	ci left: 1.125217e-02	ci right 1.148739e-02	k: 35586	n:3130000
KS ci ratio: 1.122995e-01	ci left: 3.672811e-04	ci right 4.112876e-04	k: 1217	n:3130000
STK11   3130000 perm   5103 sec   (613 perm/sec)   p_kst 3.888179e-04   p_cons 1.136933e-02   p_joint 3.015974e-04

Joint ci ratio: 1.270954e-01	ci left: 2.836149e-04	ci right 3.224119e-04	k: 950	n:3140000
Cons ci ratio: 2.062681e-02	ci left: 1.125404e-02	ci right 1.148890e-02	k: 35705	n:3140000
KS ci ratio: 1.120239e-01	ci left: 3.679686e-04	ci right 4.119422e-04	k: 1223	n:3140000
STK11   3140000 perm   5133 sec   (612 perm/sec)   p_kst 3.894904e-04   p_cons 1.137102e-02   p_joint 3.025478e-04

Joint ci ratio: 1.268954e-01	ci left: 2.836367e-04	ci right 3.223710e-04	k: 953	n:3150000
Cons ci ratio: 2.059279e-02	ci left: 1.125558e-02	ci right 1.149008e-02	k: 35823	n:3150000
KS ci ratio: 1.119325e-01	ci left: 3.674176e-04	ci right 4.112871e-04	k: 1225	n:3150000
STK11   3150000 perm   5163 sec   (610 perm/sec)   p_kst 3.888889e-04   p_cons 1.137238e-02   p_joint 3.025397e-04

Joint ci ratio: 1.267627e-01	ci left: 2.833519e-04	ci right 3.220038e-04	k: 955	n:3160000
Cons ci ratio: 2.056097e-02	ci left: 1.125490e-02	ci right 1.148903e-02	k: 35934	n:3160000
KS ci ratio: 1.117958e-01	ci left: 3.671777e-04	ci right 4.109615e-04	k: 1228	n:3160000
STK11   3160000 perm   5193 sec   (608 perm/sec)   p_kst 3.886076e-04   p_cons 1.137152e-02   p_joint 3.022152e-04

Joint ci ratio: 1.265642e-01	ci left: 2.833744e-04	ci right 3.219644e-04	k: 958	n:3170000
Cons ci ratio: 2.053477e-02	ci left: 1.124827e-02	ci right 1.148196e-02	k: 36026	n:3170000
KS ci ratio: 1.115691e-01	ci left: 3.675527e-04	ci right 4.112864e-04	k: 1233	n:3170000
STK11   3170000 perm   5223 sec   (607 perm/sec)   p_kst 3.889590e-04   p_cons 1.136467e-02   p_joint 3.022082e-04

Joint ci ratio: 1.264325e-01	ci left: 2.830924e-04	ci right 3.216007e-04	k: 960	n:3180000
Cons ci ratio: 2.049863e-02	ci left: 1.125263e-02	ci right 1.148599e-02	k: 36153	n:3180000
KS ci ratio: 1.114788e-01	ci left: 3.670082e-04	ci right 4.106395e-04	k: 1235	n:3180000
STK11   3180000 perm   5253 sec   (605 perm/sec)   p_kst 3.883648e-04   p_cons 1.136887e-02   p_joint 3.018868e-04

Joint ci ratio: 1.264325e-01	ci left: 2.822049e-04	ci right 3.205926e-04	k: 960	n:3190000
Cons ci ratio: 2.046696e-02	ci left: 1.125229e-02	ci right 1.148528e-02	k: 36265	n:3190000
KS ci ratio: 1.114338e-01	ci left: 3.661624e-04	ci right 4.096745e-04	k: 1236	n:3190000
STK11   3190000 perm   5283 sec   (604 perm/sec)   p_kst 3.874608e-04   p_cons 1.136834e-02   p_joint 3.009404e-04

Joint ci ratio: 1.263669e-01	ci left: 2.816256e-04	ci right 3.199131e-04	k: 961	n:3200000
Cons ci ratio: 2.043345e-02	ci left: 1.125412e-02	ci right 1.148676e-02	k: 36384	n:3200000
KS ci ratio: 1.113439e-01	ci left: 3.656258e-04	ci right 4.090367e-04	k: 1238	n:3200000
STK11   3200000 perm   5313 sec   (602 perm/sec)   p_kst 3.868750e-04   p_cons 1.137000e-02   p_joint 3.003125e-04

Joint ci ratio: 1.262357e-01	ci left: 2.813517e-04	ci right 3.195592e-04	k: 963	n:3210000
Cons ci ratio: 2.040264e-02	ci left: 1.125316e-02	ci right 1.148542e-02	k: 36494	n:3210000
KS ci ratio: 1.112093e-01	ci left: 3.653953e-04	ci right 4.087230e-04	k: 1241	n:3210000
STK11   3210000 perm   5344 sec   (601 perm/sec)   p_kst 3.866044e-04   p_cons 1.136885e-02   p_joint 3.000000e-04

Joint ci ratio: 1.276341e-01	ci left: 2.741632e-04	ci right 3.118382e-04	k: 942	n:3220000
Cons ci ratio: 2.036972e-02	ci left: 1.125467e-02	ci right 1.148659e-02	k: 36612	n:3220000
KS ci ratio: 1.110307e-01	ci left: 3.654683e-04	ci right 4.087304e-04	k: 1245	n:3220000
STK11   3220000 perm   5374 sec   (599 perm/sec)   p_kst 3.866460e-04   p_cons 1.137019e-02   p_joint 2.925466e-04

Joint ci ratio: 1.274989e-01	ci left: 2.739138e-04	ci right 3.115117e-04	k: 944	n:3230000
Cons ci ratio: 2.033892e-02	ci left: 1.125401e-02	ci right 1.148556e-02	k: 36723	n:3230000
KS ci ratio: 1.108085e-01	ci left: 3.658418e-04	ci right 4.090559e-04	k: 1250	n:3230000
STK11   3230000 perm   5405 sec   (598 perm/sec)   p_kst 3.869969e-04   p_cons 1.136935e-02   p_joint 2.922601e-04

Joint ci ratio: 1.274990e-01	ci left: 2.730684e-04	ci right 3.105502e-04	k: 944	n:3240000
Cons ci ratio: 2.030603e-02	ci left: 1.125582e-02	ci right 1.148703e-02	k: 36842	n:3240000
KS ci ratio: 1.106759e-01	ci left: 3.656130e-04	ci right 4.087449e-04	k: 1253	n:3240000
STK11   3240000 perm   5435 sec   (596 perm/sec)   p_kst 3.867284e-04   p_cons 1.137099e-02   p_joint 2.913580e-04

Joint ci ratio: 1.273643e-01	ci left: 2.728239e-04	ci right 3.102297e-04	k: 946	n:3250000
Cons ci ratio: 2.026942e-02	ci left: 1.126190e-02	ci right 1.149281e-02	k: 36975	n:3250000
KS ci ratio: 1.104998e-01	ci left: 3.656847e-04	ci right 4.087521e-04	k: 1257	n:3250000
STK11   3250000 perm   5465 sec   (595 perm/sec)   p_kst 3.867692e-04   p_cons 1.137692e-02   p_joint 2.910769e-04

Joint ci ratio: 1.270961e-01	ci left: 2.731750e-04	ci right 3.105441e-04	k: 950	n:3260000
Cons ci ratio: 2.023576e-02	ci left: 1.126490e-02	ci right 1.149548e-02	k: 37098	n:3260000
KS ci ratio: 1.101936e-01	ci left: 3.666510e-04	ci right 4.097047e-04	k: 1264	n:3260000
STK11   3260000 perm   5498 sec   (593 perm/sec)   p_kst 3.877301e-04   p_cons 1.137975e-02   p_joint 2.914110e-04

Joint ci ratio: 1.269627e-01	ci left: 2.729318e-04	ci right 3.102255e-04	k: 952	n:3270000
Cons ci ratio: 2.020063e-02	ci left: 1.126970e-02	ci right 1.149998e-02	k: 37227	n:3270000
KS ci ratio: 1.100198e-01	ci left: 3.667193e-04	ci right 4.097087e-04	k: 1268	n:3270000
STK11   3270000 perm   5529 sec   (591 perm/sec)   p_kst 3.877676e-04   p_cons 1.138440e-02   p_joint 2.911315e-04

Joint ci ratio: 1.269628e-01	ci left: 2.720997e-04	ci right 3.092797e-04	k: 952	n:3280000
Cons ci ratio: 2.016840e-02	ci left: 1.127144e-02	ci right 1.150138e-02	k: 37346	n:3280000
KS ci ratio: 1.100199e-01	ci left: 3.656012e-04	ci right 4.084596e-04	k: 1268	n:3280000
STK11   3280000 perm   5560 sec   (590 perm/sec)   p_kst 3.865854e-04   p_cons 1.138598e-02   p_joint 2.902439e-04

Joint ci ratio: 1.268963e-01	ci left: 2.715669e-04	ci right 3.086532e-04	k: 953	n:3290000
Cons ci ratio: 2.013253e-02	ci left: 1.127740e-02	ci right 1.150705e-02	k: 37479	n:3290000
KS ci ratio: 1.100199e-01	ci left: 3.644900e-04	ci right 4.072181e-04	k: 1268	n:3290000
STK11   3290000 perm   5591 sec   (588 perm/sec)   p_kst 3.854103e-04   p_cons 1.139179e-02   p_joint 2.896657e-04

Joint ci ratio: 1.266310e-01	ci left: 2.719177e-04	ci right 3.089684e-04	k: 957	n:3300000
Cons ci ratio: 2.009684e-02	ci left: 1.128333e-02	ci right 1.151268e-02	k: 37612	n:3300000
KS ci ratio: 1.098038e-01	ci left: 3.648589e-04	ci right 4.075409e-04	k: 1273	n:3300000
STK11   3300000 perm   5622 sec   (587 perm/sec)   p_kst 3.857576e-04   p_cons 1.139758e-02   p_joint 2.900000e-04

Joint ci ratio: 1.284547e-01	ci left: 2.631992e-04	ci right 2.996179e-04	k: 930	n:3310000
Cons ci ratio: 2.006592e-02	ci left: 1.128411e-02	ci right 1.151312e-02	k: 37728	n:3310000
KS ci ratio: 1.092902e-01	ci left: 3.672827e-04	ci right 4.100343e-04	k: 1285	n:3310000
STK11   3310000 perm   5654 sec   (585 perm/sec)   p_kst 3.882175e-04   p_cons 1.139819e-02   p_joint 2.809668e-04

Joint ci ratio: 1.283858e-01	ci left: 2.626980e-04	ci right 2.990263e-04	k: 931	n:3320000
Cons ci ratio: 2.003969e-02	ci left: 1.127979e-02	ci right 1.150841e-02	k: 37827	n:3320000
KS ci ratio: 1.091206e-01	ci left: 3.673484e-04	ci right 4.100369e-04	k: 1289	n:3320000
STK11   3320000 perm   5685 sec   (584 perm/sec)   p_kst 3.882530e-04   p_cons 1.139367e-02   p_joint 2.804217e-04

Joint ci ratio: 1.279063e-01	ci left: 2.639438e-04	ci right 3.002978e-04	k: 938	n:3330000
Cons ci ratio: 2.000689e-02	ci left: 1.128297e-02	ci right 1.151128e-02	k: 37951	n:3330000
KS ci ratio: 1.088677e-01	ci left: 3.679979e-04	ci right 4.106565e-04	k: 1295	n:3330000
STK11   3330000 perm   5716 sec   (583 perm/sec)   p_kst 3.888889e-04   p_cons 1.139670e-02   p_joint 2.816817e-04

Joint ci ratio: 1.277025e-01	ci left: 2.640231e-04	ci right 3.003256e-04	k: 941	n:3340000
Cons ci ratio: 1.997532e-02	ci left: 1.128493e-02	ci right 1.151292e-02	k: 38071	n:3340000
KS ci ratio: 1.087001e-01	ci left: 3.680611e-04	ci right 4.106572e-04	k: 1299	n:3340000
STK11   3340000 perm   5748 sec   (581 perm/sec)   p_kst 3.889222e-04   p_cons 1.139850e-02   p_joint 2.817365e-04

Joint ci ratio: 1.274322e-01	ci left: 2.643909e-04	ci right 3.006612e-04	k: 945	n:3350000
Cons ci ratio: 1.994680e-02	ci left: 1.128362e-02	ci right 1.151125e-02	k: 38180	n:3350000
KS ci ratio: 1.085332e-01	ci left: 3.681240e-04	ci right 4.106578e-04	k: 1303	n:3350000
STK11   3350000 perm   5779 sec   (580 perm/sec)   p_kst 3.889552e-04   p_cons 1.139701e-02   p_joint 2.820896e-04

Joint ci ratio: 1.272977e-01	ci left: 2.641803e-04	ci right 3.003806e-04	k: 947	n:3360000
Cons ci ratio: 1.991498e-02	ci left: 1.128617e-02	ci right 1.151348e-02	k: 38302	n:3360000
KS ci ratio: 1.082843e-01	ci left: 3.687657e-04	ci right 4.112697e-04	k: 1309	n:3360000
STK11   3360000 perm   5811 sec   (578 perm/sec)   p_kst 3.895833e-04   p_cons 1.139940e-02   p_joint 2.818452e-04

Joint ci ratio: 1.272306e-01	ci left: 2.636836e-04	ci right 2.997954e-04	k: 948	n:3370000
Cons ci ratio: 1.988489e-02	ci left: 1.128693e-02	ci right 1.151391e-02	k: 38418	n:3370000
KS ci ratio: 1.081606e-01	ci left: 3.685376e-04	ci right 4.109636e-04	k: 1312	n:3370000
STK11   3370000 perm   5843 sec   (577 perm/sec)   p_kst 3.893175e-04   p_cons 1.140000e-02   p_joint 2.813056e-04

Joint ci ratio: 1.271637e-01	ci left: 2.631899e-04	ci right 2.992137e-04	k: 949	n:3380000
Cons ci ratio: 1.986015e-02	ci left: 1.128180e-02	ci right 1.150839e-02	k: 38514	n:3380000
KS ci ratio: 1.080783e-01	ci left: 3.680229e-04	ci right 4.103554e-04	k: 1314	n:3380000
STK11   3380000 perm   5875 sec   (575 perm/sec)   p_kst 3.887574e-04   p_cons 1.139467e-02   p_joint 2.807692e-04

Joint ci ratio: 1.270969e-01	ci left: 2.626992e-04	ci right 2.986354e-04	k: 950	n:3390000
Cons ci ratio: 1.982719e-02	ci left: 1.128609e-02	ci right 1.151239e-02	k: 38642	n:3390000
KS ci ratio: 1.080373e-01	ci left: 3.672243e-04	ci right 4.094479e-04	k: 1315	n:3390000
STK11   3390000 perm   5907 sec   (574 perm/sec)   p_kst 3.879056e-04   p_cons 1.139882e-02   p_joint 2.802360e-04

Joint ci ratio: 1.269634e-01	ci left: 2.624961e-04	ci right 2.983640e-04	k: 952	n:3400000
Cons ci ratio: 1.979620e-02	ci left: 1.128831e-02	ci right 1.151429e-02	k: 38763	n:3400000
KS ci ratio: 1.079553e-01	ci left: 3.667166e-04	ci right 4.088478e-04	k: 1317	n:3400000
STK11   3400000 perm   5940 sec   (572 perm/sec)   p_kst 3.873529e-04   p_cons 1.140088e-02   p_joint 2.800000e-04

Joint ci ratio: 1.265656e-01	ci left: 2.634300e-04	ci right 2.993043e-04	k: 958	n:3410000
Cons ci ratio: 1.976150e-02	ci left: 1.129489e-02	ci right 1.152061e-02	k: 38899	n:3410000
KS ci ratio: 1.076291e-01	ci left: 3.679240e-04	ci right 4.100581e-04	k: 1325	n:3410000
STK11   3410000 perm   5972 sec   (571 perm/sec)   p_kst 3.885630e-04   p_cons 1.140733e-02   p_joint 2.809384e-04

Joint ci ratio: 1.263024e-01	ci left: 2.637924e-04	ci right 2.996357e-04	k: 962	n:3420000
Cons ci ratio: 1.973107e-02	ci left: 1.129678e-02	ci right 1.152218e-02	k: 39019	n:3420000
KS ci ratio: 1.073864e-01	ci left: 3.685554e-04	ci right 4.106606e-04	k: 1331	n:3420000
STK11   3420000 perm   6004 sec   (570 perm/sec)   p_kst 3.891813e-04   p_cons 1.140906e-02   p_joint 2.812865e-04

Joint ci ratio: 1.261062e-01	ci left: 2.638703e-04	ci right 2.996644e-04	k: 965	n:3430000
Cons ci ratio: 1.970027e-02	ci left: 1.129923e-02	ci right 1.152433e-02	k: 39141	n:3430000
KS ci ratio: 1.073059e-01	ci left: 3.680483e-04	ci right 4.100621e-04	k: 1333	n:3430000
STK11   3430000 perm   6036 sec   (568 perm/sec)   p_kst 3.886297e-04   p_cons 1.141137e-02   p_joint 2.813411e-04

Joint ci ratio: 1.261062e-01	ci left: 2.631032e-04	ci right 2.987933e-04	k: 965	n:3440000
Cons ci ratio: 1.967494e-02	ci left: 1.129560e-02	ci right 1.152034e-02	k: 39242	n:3440000
KS ci ratio: 1.072256e-01	ci left: 3.675442e-04	ci right 4.094670e-04	k: 1335	n:3440000
STK11   3440000 perm   6069 sec   (567 perm/sec)   p_kst 3.880814e-04   p_cons 1.140756e-02   p_joint 2.805233e-04

Joint ci ratio: 1.258459e-01	ci left: 2.634635e-04	ci right 2.991232e-04	k: 969	n:3450000
Cons ci ratio: 1.963911e-02	ci left: 1.130411e-02	ci right 1.152860e-02	k: 39385	n:3450000
KS ci ratio: 1.070654e-01	ci left: 3.676072e-04	ci right 4.094707e-04	k: 1339	n:3450000
STK11   3450000 perm   6101 sec   (565 perm/sec)   p_kst 3.881159e-04   p_cons 1.141594e-02   p_joint 2.808696e-04

Joint ci ratio: 1.255872e-01	ci left: 2.638218e-04	ci right 2.994510e-04	k: 973	n:3460000
Cons ci ratio: 1.960849e-02	ci left: 1.130681e-02	ci right 1.153100e-02	k: 39508	n:3460000
KS ci ratio: 1.069458e-01	ci left: 3.673886e-04	ci right 4.091775e-04	k: 1342	n:3460000
STK11   3460000 perm   6134 sec   (564 perm/sec)   p_kst 3.878613e-04   p_cons 1.141850e-02   p_joint 2.812139e-04

Joint ci ratio: 1.253301e-01	ci left: 2.641780e-04	ci right 2.997770e-04	k: 977	n:3470000
Cons ci ratio: 1.958201e-02	ci left: 1.130491e-02	ci right 1.152876e-02	k: 39615	n:3470000
KS ci ratio: 1.068663e-01	ci left: 3.668908e-04	ci right 4.085901e-04	k: 1344	n:3470000
STK11   3470000 perm   6167 sec   (563 perm/sec)   p_kst 3.873199e-04   p_cons 1.141643e-02   p_joint 2.815562e-04

Joint ci ratio: 1.252022e-01	ci left: 2.639756e-04	ci right 2.995082e-04	k: 979	n:3480000
Cons ci ratio: 1.955440e-02	ci left: 1.130445e-02	ci right 1.152797e-02	k: 39727	n:3480000
KS ci ratio: 1.068266e-01	ci left: 3.661162e-04	ci right 4.077110e-04	k: 1345	n:3480000
STK11   3480000 perm   6199 sec   (561 perm/sec)   p_kst 3.864943e-04   p_cons 1.141580e-02   p_joint 2.813218e-04

Joint ci ratio: 1.252022e-01	ci left: 2.632192e-04	ci right 2.986501e-04	k: 979	n:3490000
Cons ci ratio: 1.952541e-02	ci left: 1.130571e-02	ci right 1.152891e-02	k: 39845	n:3490000
KS ci ratio: 1.066682e-01	ci left: 3.661827e-04	ci right 4.077195e-04	k: 1349	n:3490000
STK11   3490000 perm   6232 sec   (560 perm/sec)   p_kst 3.865330e-04   p_cons 1.141691e-02   p_joint 2.805158e-04

Joint ci ratio: 1.249475e-01	ci left: 2.635743e-04	ci right 2.989754e-04	k: 983	n:3500000
Cons ci ratio: 1.949088e-02	ci left: 1.131350e-02	ci right 1.153646e-02	k: 39986	n:3500000
KS ci ratio: 1.065499e-01	ci left: 3.659707e-04	ci right 4.074346e-04	k: 1352	n:3500000
STK11   3500000 perm   6265 sec   (559 perm/sec)   p_kst 3.862857e-04   p_cons 1.142457e-02   p_joint 2.808571e-04

Joint ci ratio: 1.248840e-01	ci left: 2.630994e-04	ci right 2.984174e-04	k: 984	n:3510000
Cons ci ratio: 1.946635e-02	ci left: 1.130990e-02	ci right 1.153250e-02	k: 40087	n:3510000
KS ci ratio: 1.063536e-01	ci left: 3.663147e-04	ci right 4.077362e-04	k: 1357	n:3510000
STK11   3510000 perm   6298 sec   (557 perm/sec)   p_kst 3.866097e-04   p_cons 1.142080e-02   p_joint 2.803419e-04

Joint ci ratio: 1.248841e-01	ci left: 2.623519e-04	ci right 2.975696e-04	k: 984	n:3520000
Cons ci ratio: 1.943800e-02	ci left: 1.131085e-02	ci right 1.153314e-02	k: 40204	n:3520000
KS ci ratio: 1.061973e-01	ci left: 3.663802e-04	ci right 4.077444e-04	k: 1361	n:3520000
STK11   3520000 perm   6331 sec   (556 perm/sec)   p_kst 3.866477e-04   p_cons 1.142159e-02   p_joint 2.795455e-04

Joint ci ratio: 1.248841e-01	ci left: 2.616087e-04	ci right 2.967267e-04	k: 984	n:3530000
Cons ci ratio: 1.940928e-02	ci left: 1.131235e-02	ci right 1.153434e-02	k: 40323	n:3530000
KS ci ratio: 1.060805e-01	ci left: 3.661696e-04	ci right 4.074617e-04	k: 1364	n:3530000
STK11   3530000 perm   6364 sec   (555 perm/sec)   p_kst 3.864023e-04   p_cons 1.142295e-02   p_joint 2.787535e-04

Joint ci ratio: 1.247576e-01	ci left: 2.614170e-04	ci right 2.964710e-04	k: 986	n:3540000
Cons ci ratio: 1.937827e-02	ci left: 1.131666e-02	ci right 1.153838e-02	k: 40452	n:3540000
KS ci ratio: 1.058481e-01	ci left: 3.667852e-04	ci right 4.080505e-04	k: 1370	n:3540000
STK11   3540000 perm   6397 sec   (553 perm/sec)   p_kst 3.870056e-04   p_cons 1.142712e-02   p_joint 2.785311e-04

Joint ci ratio: 1.246314e-01	ci left: 2.612264e-04	ci right 2.962169e-04	k: 988	n:3550000
Cons ci ratio: 1.934330e-02	ci left: 1.132571e-02	ci right 1.154720e-02	k: 40598	n:3550000
KS ci ratio: 1.056940e-01	ci left: 3.668489e-04	ci right 4.080576e-04	k: 1374	n:3550000
STK11   3550000 perm   6430 sec   (552 perm/sec)   p_kst 3.870423e-04   p_cons 1.143606e-02   p_joint 2.783099e-04

Joint ci ratio: 1.271646e-01	ci left: 2.498825e-04	ci right 2.840851e-04	k: 949	n:3560000
Cons ci ratio: 1.931788e-02	ci left: 1.132381e-02	ci right 1.154497e-02	k: 40705	n:3560000
KS ci ratio: 1.055406e-01	ci left: 3.669124e-04	ci right 4.080647e-04	k: 1378	n:3560000
STK11   3560000 perm   6464 sec   (551 perm/sec)   p_kst 3.870787e-04   p_cons 1.143399e-02   p_joint 2.665730e-04

Joint ci ratio: 1.270310e-01	ci left: 2.497249e-04	ci right 2.838673e-04	k: 951	n:3570000
Cons ci ratio: 1.928802e-02	ci left: 1.132721e-02	ci right 1.154809e-02	k: 40831	n:3570000
KS ci ratio: 1.054642e-01	ci left: 3.664301e-04	ci right 4.074967e-04	k: 1380	n:3570000
STK11   3570000 perm   6497 sec   (549 perm/sec)   p_kst 3.865546e-04   p_cons 1.143725e-02   p_joint 2.663866e-04

Joint ci ratio: 1.286636e-01	ci left: 2.425378e-04	ci right 2.761563e-04	k: 927	n:3580000
Cons ci ratio: 1.925759e-02	ci left: 1.133143e-02	ci right 1.155204e-02	k: 40960	n:3580000
KS ci ratio: 1.053118e-01	ci left: 3.664944e-04	ci right 4.075051e-04	k: 1384	n:3580000
STK11   3580000 perm   6531 sec   (548 perm/sec)   p_kst 3.865922e-04   p_cons 1.144134e-02   p_joint 2.589385e-04

Joint ci ratio: 1.285252e-01	ci left: 2.424014e-04	ci right 2.759621e-04	k: 929	n:3590000
Cons ci ratio: 1.923298e-02	ci left: 1.132897e-02	ci right 1.154925e-02	k: 41065	n:3590000
KS ci ratio: 1.051601e-01	ci left: 3.665584e-04	ci right 4.075136e-04	k: 1388	n:3590000
STK11   3590000 perm   6565 sec   (547 perm/sec)   p_kst 3.866295e-04   p_cons 1.143872e-02   p_joint 2.587744e-04

Joint ci ratio: 1.283184e-01	ci left: 2.425346e-04	ci right 2.760556e-04	k: 932	n:3600000
Cons ci ratio: 1.920233e-02	ci left: 1.133372e-02	ci right 1.155373e-02	k: 41196	n:3600000
KS ci ratio: 1.050090e-01	ci left: 3.666221e-04	ci right 4.075219e-04	k: 1392	n:3600000
STK11   3600000 perm   6599 sec   (546 perm/sec)   p_kst 3.866667e-04   p_cons 1.144333e-02   p_joint 2.588889e-04

Joint ci ratio: 1.281126e-01	ci left: 2.426671e-04	ci right 2.761486e-04	k: 935	n:3610000
Cons ci ratio: 1.917418e-02	ci left: 1.133568e-02	ci right 1.155541e-02	k: 41317	n:3610000
KS ci ratio: 1.048210e-01	ci left: 3.669552e-04	ci right 4.078144e-04	k: 1397	n:3610000
STK11   3610000 perm   6633 sec   (544 perm/sec)   p_kst 3.869806e-04   p_cons 1.144515e-02   p_joint 2.590028e-04

Joint ci ratio: 1.279078e-01	ci left: 2.427990e-04	ci right 2.762410e-04	k: 938	n:3620000
Cons ci ratio: 1.914381e-02	ci left: 1.134038e-02	ci right 1.155985e-02	k: 41448	n:3620000
KS ci ratio: 1.046714e-01	ci left: 3.670175e-04	ci right 4.078217e-04	k: 1401	n:3620000
STK11   3620000 perm   6667 sec   (543 perm/sec)   p_kst 3.870166e-04   p_cons 1.144972e-02   p_joint 2.591160e-04

Joint ci ratio: 1.278397e-01	ci left: 2.423968e-04	ci right 2.757643e-04	k: 939	n:3630000
Cons ci ratio: 1.911893e-02	ci left: 1.133875e-02	ci right 1.155790e-02	k: 41556	n:3630000
KS ci ratio: 1.045596e-01	ci left: 3.668113e-04	ci right 4.075463e-04	k: 1404	n:3630000
STK11   3630000 perm   6701 sec   (542 perm/sec)   p_kst 3.867769e-04   p_cons 1.144793e-02   p_joint 2.586777e-04

Joint ci ratio: 1.276362e-01	ci left: 2.425287e-04	ci right 2.758572e-04	k: 942	n:3640000
Cons ci ratio: 1.909601e-02	ci left: 1.133494e-02	ci right 1.155375e-02	k: 41656	n:3640000
KS ci ratio: 1.043370e-01	ci left: 3.674089e-04	ci right 4.081181e-04	k: 1410	n:3640000
STK11   3640000 perm   6735 sec   (540 perm/sec)   p_kst 3.873626e-04   p_cons 1.144396e-02   p_joint 2.587912e-04

Joint ci ratio: 1.276363e-01	ci left: 2.418642e-04	ci right 2.751014e-04	k: 942	n:3650000
Cons ci ratio: 1.906878e-02	ci left: 1.133633e-02	ci right 1.155485e-02	k: 41775	n:3650000
KS ci ratio: 1.041526e-01	ci left: 3.677364e-04	ci right 4.084055e-04	k: 1415	n:3650000
STK11   3650000 perm   6769 sec   (539 perm/sec)   p_kst 3.876712e-04   p_cons 1.144521e-02   p_joint 2.580822e-04

Joint ci ratio: 1.275687e-01	ci left: 2.414679e-04	ci right 2.746317e-04	k: 943	n:3660000
Cons ci ratio: 1.904351e-02	ci left: 1.133554e-02	ci right 1.155376e-02	k: 41886	n:3660000
KS ci ratio: 1.041527e-01	ci left: 3.667317e-04	ci right 4.072897e-04	k: 1415	n:3660000
STK11   3660000 perm   6803 sec   (538 perm/sec)   p_kst 3.866120e-04   p_cons 1.144426e-02   p_joint 2.576503e-04

Joint ci ratio: 1.281129e-01	ci left: 2.386998e-04	ci right 2.716339e-04	k: 935	n:3670000
Cons ci ratio: 1.901994e-02	ci left: 1.133286e-02	ci right 1.155075e-02	k: 41990	n:3670000
KS ci ratio: 1.039327e-01	ci left: 3.673247e-04	ci right 4.078573e-04	k: 1421	n:3670000
STK11   3670000 perm   6837 sec   (537 perm/sec)   p_kst 3.871935e-04   p_cons 1.144142e-02   p_joint 2.547684e-04

Joint ci ratio: 1.280445e-01	ci left: 2.383142e-04	ci right 2.711762e-04	k: 936	n:3680000
Cons ci ratio: 1.899896e-02	ci left: 1.132721e-02	ci right 1.154475e-02	k: 42083	n:3680000
KS ci ratio: 1.037868e-01	ci left: 3.673853e-04	ci right 4.078641e-04	k: 1425	n:3680000
STK11   3680000 perm   6871 sec   (536 perm/sec)   p_kst 3.872283e-04   p_cons 1.143560e-02   p_joint 2.543478e-04

Joint ci ratio: 1.291523e-01	ci left: 2.334718e-04	ci right 2.659659e-04	k: 920	n:3690000
Cons ci ratio: 1.897215e-02	ci left: 1.132861e-02	ci right 1.154587e-02	k: 42202	n:3690000
KS ci ratio: 1.036778e-01	ci left: 3.671816e-04	ci right 4.075929e-04	k: 1428	n:3690000
STK11   3690000 perm   6905 sec   (534 perm/sec)   p_kst 3.869919e-04   p_cons 1.143686e-02   p_joint 2.493225e-04

Joint ci ratio: 1.290123e-01	ci left: 2.333638e-04	ci right 2.658051e-04	k: 922	n:3700000
Cons ci ratio: 1.894635e-02	ci left: 1.132893e-02	ci right 1.154589e-02	k: 42317	n:3700000
KS ci ratio: 1.035692e-01	ci left: 3.669790e-04	ci right 4.073231e-04	k: 1431	n:3700000
STK11   3700000 perm   6939 sec   (533 perm/sec)   p_kst 3.867568e-04   p_cons 1.143703e-02   p_joint 2.491892e-04

Joint ci ratio: 1.288031e-01	ci left: 2.335174e-04	ci right 2.659233e-04	k: 925	n:3710000
Cons ci ratio: 1.892630e-02	ci left: 1.132254e-02	ci right 1.153914e-02	k: 42407	n:3710000
KS ci ratio: 1.034609e-01	ci left: 3.667775e-04	ci right 4.070548e-04	k: 1434	n:3710000
STK11   3710000 perm   6974 sec   (532 perm/sec)   p_kst 3.865229e-04   p_cons 1.143046e-02   p_joint 2.493261e-04

Joint ci ratio: 1.285950e-01	ci left: 2.336701e-04	ci right 2.660408e-04	k: 928	n:3720000
Cons ci ratio: 1.890451e-02	ci left: 1.131832e-02	ci right 1.153459e-02	k: 42505	n:3720000
KS ci ratio: 1.033889e-01	ci left: 3.663153e-04	ci right 4.065121e-04	k: 1436	n:3720000
STK11   3720000 perm   7009 sec   (531 perm/sec)   p_kst 3.860215e-04   p_cons 1.142608e-02   p_joint 2.494624e-04

Joint ci ratio: 1.285950e-01	ci left: 2.330437e-04	ci right 2.653276e-04	k: 928	n:3730000
Cons ci ratio: 1.888033e-02	ci left: 1.131706e-02	ci right 1.153303e-02	k: 42614	n:3730000
KS ci ratio: 1.032453e-01	ci left: 3.663779e-04	ci right 4.065223e-04	k: 1440	n:3730000
STK11   3730000 perm   7044 sec   (530 perm/sec)   p_kst 3.860590e-04   p_cons 1.142466e-02   p_joint 2.487936e-04

Joint ci ratio: 1.310887e-01	ci left: 2.233661e-04	ci right 2.549562e-04	k: 893	n:3740000
Cons ci ratio: 1.885758e-02	ci left: 1.131421e-02	ci right 1.152986e-02	k: 42717	n:3740000
KS ci ratio: 1.031380e-01	ci left: 3.661797e-04	ci right 4.062582e-04	k: 1443	n:3740000
STK11   3740000 perm   7079 sec   (528 perm/sec)   p_kst 3.858289e-04   p_cons 1.142166e-02   p_joint 2.387701e-04

Joint ci ratio: 1.308693e-01	ci left: 2.235443e-04	ci right 2.551025e-04	k: 896	n:3750000
Cons ci ratio: 1.883025e-02	ci left: 1.131695e-02	ci right 1.153234e-02	k: 42841	n:3750000
KS ci ratio: 1.030666e-01	ci left: 3.657228e-04	ci right 4.057219e-04	k: 1445	n:3750000
STK11   3750000 perm   7113 sec   (527 perm/sec)   p_kst 3.853333e-04   p_cons 1.142427e-02   p_joint 2.389333e-04

Joint ci ratio: 1.307237e-01	ci left: 2.234643e-04	ci right 2.549734e-04	k: 898	n:3760000
Cons ci ratio: 1.880746e-02	ci left: 1.131438e-02	ci right 1.152946e-02	k: 42945	n:3760000
KS ci ratio: 1.030311e-01	ci left: 3.650092e-04	ci right 4.049157e-04	k: 1446	n:3760000
STK11   3760000 perm   7149 sec   (526 perm/sec)   p_kst 3.845745e-04   p_cons 1.142154e-02   p_joint 2.388298e-04

Joint ci ratio: 1.306511e-01	ci left: 2.231281e-04	ci right 2.545710e-04	k: 899	n:3770000
Cons ci ratio: 1.878211e-02	ci left: 1.131499e-02	ci right 1.152979e-02	k: 43061	n:3770000
KS ci ratio: 1.028889e-01	ci left: 3.650747e-04	ci right 4.049300e-04	k: 1450	n:3770000
STK11   3770000 perm   7183 sec   (525 perm/sec)   p_kst 3.846154e-04   p_cons 1.142202e-02   p_joint 2.384615e-04

Joint ci ratio: 1.303617e-01	ci left: 2.235615e-04	ci right 2.549902e-04	k: 903	n:3780000
Cons ci ratio: 1.875861e-02	ci left: 1.131350e-02	ci right 1.152799e-02	k: 43169	n:3780000
KS ci ratio: 1.025713e-01	ci left: 3.664287e-04	ci right 4.063008e-04	k: 1459	n:3780000
STK11   3780000 perm   7218 sec   (524 perm/sec)   p_kst 3.859788e-04   p_cons 1.142037e-02   p_joint 2.388889e-04

Joint ci ratio: 1.301459e-01	ci left: 2.237374e-04	ci right 2.551348e-04	k: 906	n:3790000
Cons ci ratio: 1.873390e-02	ci left: 1.131359e-02	ci right 1.152780e-02	k: 43283	n:3790000
KS ci ratio: 1.024310e-01	ci left: 3.664902e-04	ci right 4.063112e-04	k: 1463	n:3790000
STK11   3790000 perm   7253 sec   (523 perm/sec)   p_kst 3.860158e-04   p_cons 1.142032e-02   p_joint 2.390501e-04

Joint ci ratio: 1.140979e-01	ci left: 2.928061e-04	ci right 3.284889e-04	k: 1179	n:3800000
Cons ci ratio: 1.870818e-02	ci left: 1.131498e-02	ci right 1.152892e-02	k: 43402	n:3800000
KS ci ratio: 1.022914e-01	ci left: 3.665515e-04	ci right 4.063216e-04	k: 1467	n:3800000
STK11   3800000 perm   7289 sec   (521 perm/sec)   p_kst 3.860526e-04   p_cons 1.142158e-02   p_joint 3.102632e-04

Joint ci ratio: 1.139050e-01	ci left: 2.930575e-04	ci right 3.287065e-04	k: 1183	n:3810000
Cons ci ratio: 1.868301e-02	ci left: 1.131585e-02	ci right 1.152951e-02	k: 43519	n:3810000
KS ci ratio: 1.022218e-01	ci left: 3.661009e-04	ci right 4.057935e-04	k: 1469	n:3810000
STK11   3810000 perm   7325 sec   (520 perm/sec)   p_kst 3.855643e-04   p_cons 1.142231e-02   p_joint 3.104987e-04

Joint ci ratio: 1.139050e-01	ci left: 2.922904e-04	ci right 3.278460e-04	k: 1183	n:3820000
Cons ci ratio: 1.866270e-02	ci left: 1.131098e-02	ci right 1.152432e-02	k: 43614	n:3820000
KS ci ratio: 1.021177e-01	ci left: 3.659078e-04	ci right 4.055366e-04	k: 1472	n:3820000
STK11   3820000 perm   7360 sec   (519 perm/sec)   p_kst 3.853403e-04   p_cons 1.141728e-02   p_joint 3.096859e-04

Joint ci ratio: 1.136652e-01	ci left: 2.927955e-04	ci right 3.283326e-04	k: 1188	n:3830000
Cons ci ratio: 1.863534e-02	ci left: 1.131471e-02	ci right 1.152780e-02	k: 43742	n:3830000
KS ci ratio: 1.019103e-01	ci left: 3.664790e-04	ci right 4.060843e-04	k: 1478	n:3830000
STK11   3830000 perm   7396 sec   (518 perm/sec)   p_kst 3.859008e-04   p_cons 1.142089e-02   p_joint 3.101828e-04

Joint ci ratio: 1.168028e-01	ci left: 2.760994e-04	ci right 3.105989e-04	k: 1125	n:3840000
Cons ci ratio: 1.861626e-02	ci left: 1.130857e-02	ci right 1.152133e-02	k: 43832	n:3840000
KS ci ratio: 1.017728e-01	ci left: 3.665398e-04	ci right 4.060950e-04	k: 1482	n:3840000
STK11   3840000 perm   7432 sec   (517 perm/sec)   p_kst 3.859375e-04   p_cons 1.141458e-02   p_joint 2.929687e-04

Joint ci ratio: 1.167510e-01	ci left: 2.756344e-04	ci right 3.100595e-04	k: 1126	n:3850000
Cons ci ratio: 1.858868e-02	ci left: 1.131281e-02	ci right 1.152533e-02	k: 43962	n:3850000
KS ci ratio: 1.017042e-01	ci left: 3.660940e-04	ci right 4.055729e-04	k: 1484	n:3850000
STK11   3850000 perm   7468 sec   (516 perm/sec)   p_kst 3.854545e-04   p_cons 1.141870e-02   p_joint 2.924675e-04

Joint ci ratio: 1.165443e-01	ci left: 2.759264e-04	ci right 3.103227e-04	k: 1130	n:3860000
Cons ci ratio: 1.856335e-02	ci left: 1.131445e-02	ci right 1.152670e-02	k: 44082	n:3860000
KS ci ratio: 1.016358e-01	ci left: 3.656505e-04	ci right 4.050535e-04	k: 1486	n:3860000
STK11   3860000 perm   7504 sec   (514 perm/sec)   p_kst 3.849741e-04   p_cons 1.142021e-02   p_joint 2.927461e-04

Joint ci ratio: 1.163387e-01	ci left: 2.762169e-04	ci right 3.105845e-04	k: 1134	n:3870000
Cons ci ratio: 1.854215e-02	ci left: 1.131119e-02	ci right 1.152314e-02	k: 44183	n:3870000
KS ci ratio: 1.015335e-01	ci left: 3.654612e-04	ci right 4.048017e-04	k: 1489	n:3870000
STK11   3870000 perm   7540 sec   (513 perm/sec)   p_kst 3.847545e-04   p_cons 1.141680e-02   p_joint 2.930233e-04

Joint ci ratio: 1.162364e-01	ci left: 2.760055e-04	ci right 3.103145e-04	k: 1136	n:3880000
Cons ci ratio: 1.851891e-02	ci left: 1.131051e-02	ci right 1.152218e-02	k: 44294	n:3880000
KS ci ratio: 1.014314e-01	ci left: 3.652728e-04	ci right 4.045512e-04	k: 1492	n:3880000
STK11   3880000 perm   7576 sec   (512 perm/sec)   p_kst 3.845361e-04   p_cons 1.141598e-02   p_joint 2.927835e-04

Joint ci ratio: 1.160325e-01	ci left: 2.762944e-04	ci right 3.105749e-04	k: 1140	n:3890000
Cons ci ratio: 1.849512e-02	ci left: 1.131060e-02	ci right 1.152200e-02	k: 44408	n:3890000
KS ci ratio: 1.012958e-01	ci left: 3.653361e-04	ci right 4.045656e-04	k: 1496	n:3890000
STK11   3890000 perm   7612 sec   (511 perm/sec)   p_kst 3.845758e-04   p_cons 1.141594e-02   p_joint 2.930591e-04

Joint ci ratio: 1.158296e-01	ci left: 2.765818e-04	ci right 3.108339e-04	k: 1144	n:3900000
Cons ci ratio: 1.846954e-02	ci left: 1.131300e-02	ci right 1.152414e-02	k: 44531	n:3900000
KS ci ratio: 1.011608e-01	ci left: 3.653990e-04	ci right 4.045798e-04	k: 1500	n:3900000
STK11   3900000 perm   7649 sec   (510 perm/sec)   p_kst 3.846154e-04   p_cons 1.141821e-02   p_joint 2.933333e-04

Joint ci ratio: 1.156781e-01	ci left: 2.766195e-04	ci right 3.108284e-04	k: 1147	n:3910000
Cons ci ratio: 1.844511e-02	ci left: 1.131410e-02	ci right 1.152499e-02	k: 44649	n:3910000
KS ci ratio: 1.010598e-01	ci left: 3.652123e-04	ci right 4.043317e-04	k: 1503	n:3910000
STK11   3910000 perm   7685 sec   (509 perm/sec)   p_kst 3.843990e-04   p_cons 1.141918e-02   p_joint 2.933504e-04

Joint ci ratio: 1.154771e-01	ci left: 2.769047e-04	ci right 3.110854e-04	k: 1151	n:3920000
Cons ci ratio: 1.841579e-02	ci left: 1.132130e-02	ci right 1.153198e-02	k: 44791	n:3920000
KS ci ratio: 1.009592e-01	ci left: 3.650266e-04	ci right 4.040849e-04	k: 1506	n:3920000
STK11   3920000 perm   7721 sec   (508 perm/sec)   p_kst 3.841837e-04   p_cons 1.142628e-02   p_joint 2.936224e-04

Joint ci ratio: 1.154772e-01	ci left: 2.762001e-04	ci right 3.102938e-04	k: 1151	n:3930000
Cons ci ratio: 1.839240e-02	ci left: 1.132136e-02	ci right 1.153177e-02	k: 44905	n:3930000
KS ci ratio: 1.009592e-01	ci left: 3.640978e-04	ci right 4.030567e-04	k: 1506	n:3930000
STK11   3930000 perm   7758 sec   (507 perm/sec)   p_kst 3.832061e-04   p_cons 1.142621e-02   p_joint 2.928753e-04

Joint ci ratio: 1.153771e-01	ci left: 2.759921e-04	ci right 3.100286e-04	k: 1153	n:3940000
Cons ci ratio: 1.837033e-02	ci left: 1.131992e-02	ci right 1.153004e-02	k: 45013	n:3940000
KS ci ratio: 1.008255e-01	ci left: 3.641633e-04	ci right 4.030746e-04	k: 1510	n:3940000
STK11   3940000 perm   7795 sec   (505 perm/sec)   p_kst 3.832487e-04   p_cons 1.142462e-02   p_joint 2.926396e-04

Joint ci ratio: 1.163391e-01	ci left: 2.706226e-04	ci right 3.042943e-04	k: 1134	n:3950000
Cons ci ratio: 1.834629e-02	ci left: 1.132099e-02	ci right 1.153086e-02	k: 45131	n:3950000
KS ci ratio: 1.006259e-01	ci left: 3.647221e-04	ci right 4.036114e-04	k: 1516	n:3950000
STK11   3950000 perm   7831 sec   (504 perm/sec)   p_kst 3.837975e-04   p_cons 1.142557e-02   p_joint 2.870886e-04

Joint ci ratio: 1.162879e-01	ci left: 2.701844e-04	ci right 3.037857e-04	k: 1135	n:3960000
Cons ci ratio: 1.832051e-02	ci left: 1.132433e-02	ci right 1.153396e-02	k: 45258	n:3960000
KS ci ratio: 1.005597e-01	ci left: 3.642934e-04	ci right 4.031099e-04	k: 1518	n:3960000
STK11   3960000 perm   7868 sec   (503 perm/sec)   p_kst 3.833333e-04   p_cons 1.142879e-02   p_joint 2.866162e-04

Joint ci ratio: 1.161857e-01	ci left: 2.699929e-04	ci right 3.035389e-04	k: 1137	n:3970000
Cons ci ratio: 1.829911e-02	ci left: 1.132238e-02	ci right 1.153173e-02	k: 45364	n:3970000
KS ci ratio: 1.004605e-01	ci left: 3.641125e-04	ci right 4.028692e-04	k: 1521	n:3970000
STK11   3970000 perm   7905 sec   (502 perm/sec)   p_kst 3.831234e-04   p_cons 1.142670e-02   p_joint 2.863980e-04

Joint ci ratio: 1.159820e-01	ci left: 2.702904e-04	ci right 3.038105e-04	k: 1141	n:3980000
Cons ci ratio: 1.828043e-02	ci left: 1.131719e-02	ci right 1.152623e-02	k: 45457	n:3980000
KS ci ratio: 1.003288e-01	ci left: 3.641774e-04	ci right 4.028872e-04	k: 1525	n:3980000
STK11   3980000 perm   7941 sec   (501 perm/sec)   p_kst 3.831658e-04   p_cons 1.142136e-02   p_joint 2.866834e-04

Joint ci ratio: 1.159313e-01	ci left: 2.698563e-04	ci right 3.033069e-04	k: 1142	n:3990000
Cons ci ratio: 1.825755e-02	ci left: 1.131727e-02	ci right 1.152605e-02	k: 45571	n:3990000
KS ci ratio: 1.002959e-01	ci left: 3.635090e-04	ci right 4.021344e-04	k: 1526	n:3990000
STK11   3990000 perm   7978 sec   (500 perm/sec)   p_kst 3.824561e-04   p_cons 1.142130e-02   p_joint 2.862155e-04

Joint ci ratio: 1.157795e-01	ci left: 2.699100e-04	ci right 3.033204e-04	k: 1145	n:4000000
Cons ci ratio: 1.823456e-02	ci left: 1.131760e-02	ci right 1.152611e-02	k: 45686	n:4000000
KS ci ratio: 1.002632e-01	ci left: 3.628440e-04	ci right 4.013853e-04	k: 1527	n:4000000
STK11   4000000 perm   8015 sec   (499 perm/sec)   p_kst 3.817500e-04   p_cons 1.142150e-02   p_joint 2.862500e-04

Joint ci ratio: 1.179619e-01	ci left: 2.590691e-04	ci right 2.917843e-04	k: 1103	n:4010000
Cons ci ratio: 1.821205e-02	ci left: 1.131742e-02	ci right 1.152568e-02	k: 45799	n:4010000
KS ci ratio: 1.001322e-01	ci left: 3.629116e-04	ci right 4.014068e-04	k: 1531	n:4010000
STK11   4010000 perm   8052 sec   (498 perm/sec)   p_kst 3.817955e-04   p_cons 1.142120e-02   p_joint 2.750623e-04

Joint ci ratio: 1.186628e-01	ci left: 2.552865e-04	ci right 2.877290e-04	k: 1090	n:4020000
Cons ci ratio: 1.819043e-02	ci left: 1.131626e-02	ci right 1.152424e-02	k: 45908	n:4020000
KS ci ratio: 1.000995e-01	ci left: 3.622514e-04	ci right 4.006633e-04	k: 1532	n:4020000
STK11   4020000 perm   8089 sec   (497 perm/sec)   p_kst 3.810945e-04   p_cons 1.141990e-02   p_joint 2.711443e-04

Joint ci ratio: 1.183378e-01	ci left: 2.560978e-04	ci right 2.885479e-04	k: 1096	n:4030000
Cons ci ratio: 1.816988e-02	ci left: 1.131387e-02	ci right 1.152157e-02	k: 46012	n:4030000
KS ci ratio: 9.996921e-02	ci left: 3.623202e-04	ci right 4.006865e-04	k: 1536	n:4030000
STK11   4030000 perm   8126 sec   (496 perm/sec)   p_kst 3.811414e-04   p_cons 1.141737e-02   p_joint 2.719603e-04

Joint ci ratio: 1.188811e-01	ci left: 2.530620e-04	ci right 2.852851e-04	k: 1086	n:4040000
Cons ci ratio: 1.814722e-02	ci left: 1.131420e-02	ci right 1.152165e-02	k: 46127	n:4040000
KS ci ratio: 9.990425e-02	ci left: 3.619061e-04	ci right 4.002021e-04	k: 1538	n:4040000
STK11   4040000 perm   8163 sec   (495 perm/sec)   p_kst 3.806931e-04   p_cons 1.141757e-02   p_joint 2.688119e-04

Joint ci ratio: 1.187174e-01	ci left: 2.531559e-04	ci right 2.853434e-04	k: 1089	n:4050000
Cons ci ratio: 1.812603e-02	ci left: 1.131281e-02	ci right 1.151999e-02	k: 46235	n:4050000
KS ci ratio: 9.983942e-02	ci left: 3.614940e-04	ci right 3.997201e-04	k: 1540	n:4050000
STK11   4050000 perm   8201 sec   (494 perm/sec)   p_kst 3.802469e-04   p_cons 1.141605e-02   p_joint 2.688889e-04

Joint ci ratio: 1.186086e-01	ci left: 2.530104e-04	ci right 2.851478e-04	k: 1091	n:4060000
Cons ci ratio: 1.810017e-02	ci left: 1.131731e-02	ci right 1.152427e-02	k: 46367	n:4060000
KS ci ratio: 9.961339e-02	ci left: 3.622847e-04	ci right 4.005027e-04	k: 1547	n:4060000
STK11   4060000 perm   8238 sec   (493 perm/sec)   p_kst 3.810345e-04   p_cons 1.142044e-02   p_joint 2.687192e-04

Joint ci ratio: 1.185002e-01	ci left: 2.528655e-04	ci right 2.849532e-04	k: 1093	n:4070000
Cons ci ratio: 1.807894e-02	ci left: 1.131617e-02	ci right 1.152286e-02	k: 46476	n:4070000
KS ci ratio: 9.958127e-02	ci left: 3.616342e-04	ci right 3.997705e-04	k: 1548	n:4070000
STK11   4070000 perm   8276 sec   (492 perm/sec)   p_kst 3.803440e-04   p_cons 1.141916e-02   p_joint 2.685504e-04

Joint ci ratio: 1.183920e-01	ci left: 2.527214e-04	ci right 2.847595e-04	k: 1095	n:4080000
Cons ci ratio: 1.805740e-02	ci left: 1.131551e-02	ci right 1.152194e-02	k: 46587	n:4080000
KS ci ratio: 9.948498e-02	ci left: 3.614648e-04	ci right 3.995443e-04	k: 1551	n:4080000
STK11   4080000 perm   8314 sec   (491 perm/sec)   p_kst 3.801471e-04   p_cons 1.141838e-02   p_joint 2.683824e-04

Joint ci ratio: 1.181228e-01	ci left: 2.532899e-04	ci right 2.853219e-04	k: 1100	n:4090000
Cons ci ratio: 1.803613e-02	ci left: 1.131462e-02	ci right 1.152079e-02	k: 46697	n:4090000
KS ci ratio: 9.929321e-02	ci left: 3.620115e-04	ci right 4.000708e-04	k: 1557	n:4090000
STK11   4090000 perm   8352 sec   (490 perm/sec)   p_kst 3.806846e-04   p_cons 1.141736e-02   p_joint 2.689487e-04

Joint ci ratio: 1.180157e-01	ci left: 2.531455e-04	ci right 2.851282e-04	k: 1102	n:4100000
Cons ci ratio: 1.801766e-02	ci left: 1.131033e-02	ci right 1.151621e-02	k: 46793	n:4100000
KS ci ratio: 9.922956e-02	ci left: 3.616043e-04	ci right 3.995949e-04	k: 1559	n:4100000
STK11   4100000 perm   8390 sec   (489 perm/sec)   p_kst 3.802439e-04   p_cons 1.141293e-02   p_joint 2.687805e-04

Joint ci ratio: 1.179623e-01	ci left: 2.527657e-04	ci right 2.846849e-04	k: 1103	n:4110000
Cons ci ratio: 1.799672e-02	ci left: 1.130922e-02	ci right 1.151483e-02	k: 46902	n:4110000
KS ci ratio: 9.913430e-02	ci left: 3.614363e-04	ci right 3.993707e-04	k: 1562	n:4110000
STK11   4110000 perm   8428 sec   (488 perm/sec)   p_kst 3.800487e-04   p_cons 1.141168e-02   p_joint 2.683698e-04

Joint ci ratio: 1.178556e-01	ci left: 2.526233e-04	ci right 2.844937e-04	k: 1105	n:4120000
Cons ci ratio: 1.797837e-02	ci left: 1.130496e-02	ci right 1.151029e-02	k: 46998	n:4120000
KS ci ratio: 9.900769e-02	ci left: 3.615058e-04	ci right 3.993963e-04	k: 1566	n:4120000
STK11   4120000 perm   8467 sec   (487 perm/sec)   p_kst 3.800971e-04   p_cons 1.140728e-02   p_joint 2.682039e-04

Joint ci ratio: 1.178556e-01	ci left: 2.520116e-04	ci right 2.838049e-04	k: 1105	n:4130000
Cons ci ratio: 1.795892e-02	ci left: 1.130218e-02	ci right 1.150723e-02	k: 47100	n:4130000
KS ci ratio: 9.894459e-02	ci left: 3.611028e-04	ci right 3.989255e-04	k: 1568	n:4130000
STK11   4130000 perm   8505 sec   (486 perm/sec)   p_kst 3.796610e-04   p_cons 1.140436e-02   p_joint 2.675545e-04

Joint ci ratio: 1.178557e-01	ci left: 2.514029e-04	ci right 2.831194e-04	k: 1105	n:4140000
Cons ci ratio: 1.794203e-02	ci left: 1.129628e-02	ci right 1.150103e-02	k: 47189	n:4140000
KS ci ratio: 9.888160e-02	ci left: 3.607017e-04	ci right 3.984569e-04	k: 1570	n:4140000
STK11   4140000 perm   8543 sec   (485 perm/sec)   p_kst 3.792271e-04   p_cons 1.139831e-02   p_joint 2.669082e-04

Joint ci ratio: 1.176961e-01	ci left: 2.514987e-04	ci right 2.831813e-04	k: 1108	n:4150000
Cons ci ratio: 1.792098e-02	ci left: 1.129568e-02	ci right 1.150018e-02	k: 47300	n:4150000
KS ci ratio: 9.878734e-02	ci left: 3.605376e-04	ci right 3.982376e-04	k: 1573	n:4150000
STK11   4150000 perm   8582 sec   (484 perm/sec)   p_kst 3.790361e-04   p_cons 1.139759e-02   p_joint 2.669880e-04

Joint ci ratio: 1.174317e-01	ci left: 2.520607e-04	ci right 2.837378e-04	k: 1113	n:4160000
Cons ci ratio: 1.789923e-02	ci left: 1.129605e-02	ci right 1.150030e-02	k: 47415	n:4160000
KS ci ratio: 9.863079e-02	ci left: 3.608431e-04	ci right 3.985118e-04	k: 1578	n:4160000
STK11   4160000 perm   8620 sec   (483 perm/sec)   p_kst 3.793269e-04   p_cons 1.139784e-02   p_joint 2.675481e-04

Joint ci ratio: 1.173264e-01	ci left: 2.519218e-04	ci right 2.835511e-04	k: 1115	n:4170000
Cons ci ratio: 1.788155e-02	ci left: 1.129140e-02	ci right 1.149537e-02	k: 47509	n:4170000
KS ci ratio: 9.859961e-02	ci left: 3.602117e-04	ci right 3.978019e-04	k: 1579	n:4170000
STK11   4170000 perm   8659 sec   (482 perm/sec)   p_kst 3.786571e-04   p_cons 1.139305e-02   p_joint 2.673861e-04

Joint ci ratio: 1.170644e-01	ci left: 2.524802e-04	ci right 2.841040e-04	k: 1120	n:4180000
Cons ci ratio: 1.786109e-02	ci left: 1.129035e-02	ci right 1.149406e-02	k: 47618	n:4180000
KS ci ratio: 9.841290e-02	ci left: 3.607500e-04	ci right 3.983210e-04	k: 1585	n:4180000
STK11   4180000 perm   8697 sec   (481 perm/sec)   p_kst 3.791866e-04   p_cons 1.139187e-02   p_joint 2.679426e-04

Joint ci ratio: 1.168561e-01	ci left: 2.528044e-04	ci right 2.844085e-04	k: 1124	n:4190000
Cons ci ratio: 1.784050e-02	ci left: 1.128954e-02	ci right 1.149300e-02	k: 47728	n:4190000
KS ci ratio: 9.822724e-02	ci left: 3.612858e-04	ci right 3.988375e-04	k: 1591	n:4190000
STK11   4190000 perm   8736 sec   (480 perm/sec)   p_kst 3.797136e-04   p_cons 1.139093e-02   p_joint 2.682578e-04

Joint ci ratio: 1.168042e-01	ci left: 2.524336e-04	ci right 2.839764e-04	k: 1125	n:4200000
Cons ci ratio: 1.782074e-02	ci left: 1.128779e-02	ci right 1.149098e-02	k: 47834	n:4200000
KS ci ratio: 9.810407e-02	ci left: 3.613546e-04	ci right 3.988636e-04	k: 1595	n:4200000
STK11   4200000 perm   8775 sec   (479 perm/sec)   p_kst 3.797619e-04   p_cons 1.138905e-02   p_joint 2.678571e-04

Joint ci ratio: 1.188817e-01	ci left: 2.428433e-04	ci right 2.737654e-04	k: 1086	n:4210000
Cons ci ratio: 1.779973e-02	ci left: 1.128770e-02	ci right 1.149065e-02	k: 47947	n:4210000
KS ci ratio: 9.804268e-02	ci left: 3.609597e-04	ci right 3.984029e-04	k: 1597	n:4210000
STK11   4210000 perm   8814 sec   (478 perm/sec)   p_kst 3.793349e-04   p_cons 1.138884e-02   p_joint 2.579572e-04

Joint ci ratio: 1.248870e-01	ci left: 2.188335e-04	ci right 2.482101e-04	k: 984	n:4220000
Cons ci ratio: 1.777805e-02	ci left: 1.128855e-02	ci right 1.149127e-02	k: 48064	n:4220000
KS ci ratio: 9.804273e-02	ci left: 3.601043e-04	ci right 3.974589e-04	k: 1597	n:4220000
STK11   4220000 perm   8854 sec   (477 perm/sec)   p_kst 3.784360e-04   p_cons 1.138957e-02   p_joint 2.331754e-04

Joint ci ratio: 1.248237e-01	ci left: 2.185452e-04	ci right 2.478671e-04	k: 985	n:4230000
Cons ci ratio: 1.775849e-02	ci left: 1.128681e-02	ci right 1.148927e-02	k: 48170	n:4230000
KS ci ratio: 9.788969e-02	ci left: 3.604061e-04	ci right 3.977302e-04	k: 1602	n:4230000
STK11   4230000 perm   8893 sec   (476 perm/sec)   p_kst 3.787234e-04   p_cons 1.138771e-02   p_joint 2.328605e-04

Joint ci ratio: 1.246973e-01	ci left: 2.184867e-04	ci right 2.477689e-04	k: 987	n:4240000
Cons ci ratio: 1.773938e-02	ci left: 1.128461e-02	ci right 1.148681e-02	k: 48274	n:4240000
KS ci ratio: 9.776778e-02	ci left: 3.604764e-04	ci right 3.977587e-04	k: 1606	n:4240000
STK11   4240000 perm   8933 sec   (475 perm/sec)   p_kst 3.787736e-04   p_cons 1.138538e-02   p_joint 2.327830e-04

Joint ci ratio: 1.245713e-01	ci left: 2.184286e-04	ci right 2.476712e-04	k: 989	n:4250000
Cons ci ratio: 1.772162e-02	ci left: 1.128078e-02	ci right 1.148271e-02	k: 48371	n:4250000
KS ci ratio: 9.770702e-02	ci left: 3.600873e-04	ci right 3.973048e-04	k: 1608	n:4250000
STK11   4250000 perm   8972 sec   (474 perm/sec)   p_kst 3.783529e-04   p_cons 1.138141e-02   p_joint 2.327059e-04

Joint ci ratio: 1.226651e-01	ci left: 2.249679e-04	ci right 2.545916e-04	k: 1020	n:4260000
Cons ci ratio: 1.770040e-02	ci left: 1.128141e-02	ci right 1.148311e-02	k: 48487	n:4260000
KS ci ratio: 9.971098e-02	ci left: 3.445892e-04	ci right 3.809782e-04	k: 1544	n:4260000
STK11   4260000 perm   9011 sec   (473 perm/sec)   p_kst 3.624413e-04   p_cons 1.138192e-02   p_joint 2.394366e-04

Joint ci ratio: 1.225452e-01	ci left: 2.248950e-04	ci right 2.544782e-04	k: 1022	n:4270000
Cons ci ratio: 1.767908e-02	ci left: 1.128227e-02	ci right 1.148374e-02	k: 48604	n:4270000
KS ci ratio: 9.964653e-02	ci left: 3.442389e-04	ci right 3.805660e-04	k: 1546	n:4270000
STK11   4270000 perm   9051 sec   (472 perm/sec)   p_kst 3.620609e-04   p_cons 1.138267e-02   p_joint 2.393443e-04

Joint ci ratio: 1.224256e-01	ci left: 2.248225e-04	ci right 2.543652e-04	k: 1024	n:4280000
Cons ci ratio: 1.765911e-02	ci left: 1.128149e-02	ci right 1.148272e-02	k: 48714	n:4280000
KS ci ratio: 9.942181e-02	ci left: 3.450294e-04	ci right 3.813530e-04	k: 1553	n:4280000
STK11   4280000 perm   9091 sec   (471 perm/sec)   p_kst 3.628505e-04   p_cons 1.138178e-02   p_joint 2.392523e-04

Joint ci ratio: 1.224256e-01	ci left: 2.242985e-04	ci right 2.537723e-04	k: 1024	n:4290000
Cons ci ratio: 1.763831e-02	ci left: 1.128189e-02	ci right 1.148288e-02	k: 48829	n:4290000
KS ci ratio: 9.938986e-02	ci left: 3.444525e-04	ci right 3.807030e-04	k: 1554	n:4290000
STK11   4290000 perm   9131 sec   (470 perm/sec)   p_kst 3.622378e-04   p_cons 1.138205e-02   p_joint 2.386946e-04

Joint ci ratio: 1.221874e-01	ci left: 2.246786e-04	ci right 2.541408e-04	k: 1028	n:4300000
Cons ci ratio: 1.761721e-02	ci left: 1.128274e-02	ci right 1.148350e-02	k: 48946	n:4300000
KS ci ratio: 9.919864e-02	ci left: 3.450121e-04	ci right 3.812476e-04	k: 1560	n:4300000
STK11   4300000 perm   9171 sec   (469 perm/sec)   p_kst 3.627907e-04   p_cons 1.138279e-02   p_joint 2.390698e-04

Joint ci ratio: 1.224257e-01	ci left: 2.232576e-04	ci right 2.525947e-04	k: 1024	n:4310000
Cons ci ratio: 1.759527e-02	ci left: 1.128474e-02	ci right 1.148529e-02	k: 49068	n:4310000
KS ci ratio: 9.907178e-02	ci left: 3.451167e-04	ci right 3.813141e-04	k: 1564	n:4310000
STK11   4310000 perm   9211 sec   (468 perm/sec)   p_kst 3.628770e-04   p_cons 1.138469e-02   p_joint 2.375870e-04

Joint ci ratio: 1.221874e-01	ci left: 2.236384e-04	ci right 2.529642e-04	k: 1028	n:4320000
Cons ci ratio: 1.757397e-02	ci left: 1.128604e-02	ci right 1.148637e-02	k: 49187	n:4320000
KS ci ratio: 9.894541e-02	ci left: 3.452208e-04	ci right 3.813803e-04	k: 1568	n:4320000
STK11   4320000 perm   9251 sec   (467 perm/sec)   p_kst 3.629630e-04   p_cons 1.138588e-02   p_joint 2.379630e-04

Joint ci ratio: 1.220689e-01	ci left: 2.235697e-04	ci right 2.528560e-04	k: 1030	n:4330000
Cons ci ratio: 1.755634e-02	ci left: 1.128274e-02	ci right 1.148281e-02	k: 49286	n:4330000
KS ci ratio: 9.888243e-02	ci left: 3.448740e-04	ci right 3.809728e-04	k: 1570	n:4330000
STK11   4330000 perm   9292 sec   (466 perm/sec)   p_kst 3.625866e-04   p_cons 1.138245e-02   p_joint 2.378753e-04

Joint ci ratio: 1.230882e-01	ci left: 2.192576e-04	ci right 2.482363e-04	k: 1013	n:4340000
Cons ci ratio: 1.753661e-02	ci left: 1.128221e-02	ci right 1.148204e-02	k: 49397	n:4340000
KS ci ratio: 9.869411e-02	ci left: 3.454277e-04	ci right 3.815117e-04	k: 1576	n:4340000
STK11   4340000 perm   9332 sec   (465 perm/sec)   p_kst 3.631336e-04   p_cons 1.138180e-02   p_joint 2.334101e-04

Joint ci ratio: 1.237615e-01	ci left: 2.163029e-04	ci right 2.450589e-04	k: 1002	n:4350000
Cons ci ratio: 1.751838e-02	ci left: 1.127985e-02	ci right 1.147942e-02	k: 49500	n:4350000
KS ci ratio: 9.853801e-02	ci left: 3.457547e-04	ci right 3.818124e-04	k: 1581	n:4350000
STK11   4350000 perm   9374 sec   (464 perm/sec)   p_kst 3.634483e-04   p_cons 1.137931e-02   p_joint 2.303448e-04

Joint ci ratio: 1.235768e-01	ci left: 2.164736e-04	ci right 2.452062e-04	k: 1005	n:4360000
Cons ci ratio: 1.749717e-02	ci left: 1.128138e-02	ci right 1.148074e-02	k: 49620	n:4360000
KS ci ratio: 9.838265e-02	ci left: 3.460802e-04	ci right 3.821117e-04	k: 1586	n:4360000
STK11   4360000 perm   9414 sec   (463 perm/sec)   p_kst 3.637615e-04   p_cons 1.138073e-02   p_joint 2.305046e-04

Joint ci ratio: 1.232099e-01	ci left: 2.173088e-04	ci right 2.460604e-04	k: 1011	n:4370000
Cons ci ratio: 1.747675e-02	ci left: 1.128199e-02	ci right 1.148113e-02	k: 49736	n:4370000
KS ci ratio: 9.819717e-02	ci left: 3.466275e-04	ci right 3.826440e-04	k: 1592	n:4370000
STK11   4370000 perm   9457 sec   (462 perm/sec)   p_kst 3.643021e-04   p_cons 1.138124e-02   p_joint 2.313501e-04

Joint ci ratio: 1.228462e-01	ci left: 2.181404e-04	ci right 2.469106e-04	k: 1017	n:4380000
Cons ci ratio: 1.745764e-02	ci left: 1.128101e-02	ci right 1.147991e-02	k: 49845	n:4380000
KS ci ratio: 9.804341e-02	ci left: 3.469497e-04	ci right 3.829399e-04	k: 1597	n:4380000
STK11   4380000 perm   9498 sec   (461 perm/sec)   p_kst 3.646119e-04   p_cons 1.138014e-02   p_joint 2.321918e-04

Joint ci ratio: 1.227257e-01	ci left: 2.180851e-04	ci right 2.468178e-04	k: 1019	n:4390000
Cons ci ratio: 1.744018e-02	ci left: 1.127799e-02	ci right 1.147664e-02	k: 49945	n:4390000
KS ci ratio: 9.792092e-02	ci left: 3.470482e-04	ci right 3.830011e-04	k: 1601	n:4390000
STK11   4390000 perm   9540 sec   (460 perm/sec)   p_kst 3.646925e-04   p_cons 1.137699e-02   p_joint 2.321185e-04

Joint ci ratio: 1.227257e-01	ci left: 2.175894e-04	ci right 2.462568e-04	k: 1019	n:4400000
Cons ci ratio: 1.742189e-02	ci left: 1.127612e-02	ci right 1.147452e-02	k: 50050	n:4400000
KS ci ratio: 9.792097e-02	ci left: 3.462595e-04	ci right 3.821307e-04	k: 1601	n:4400000
STK11   4400000 perm   9580 sec   (459 perm/sec)   p_kst 3.638636e-04   p_cons 1.137500e-02   p_joint 2.315909e-04

Joint ci ratio: 1.223067e-01	ci left: 2.186347e-04	ci right 2.473343e-04	k: 1026	n:4410000
Cons ci ratio: 1.740174e-02	ci left: 1.127674e-02	ci right 1.147492e-02	k: 50166	n:4410000
KS ci ratio: 9.767733e-02	ci left: 3.472440e-04	ci right 3.831226e-04	k: 1609	n:4410000
STK11   4410000 perm   9621 sec   (458 perm/sec)   p_kst 3.648526e-04   p_cons 1.137551e-02   p_joint 2.326531e-04

Joint ci ratio: 1.220100e-01	ci left: 2.192367e-04	ci right 2.479405e-04	k: 1031	n:4420000
Cons ci ratio: 1.737868e-02	ci left: 1.128119e-02	ci right 1.147918e-02	k: 50299	n:4420000
KS ci ratio: 9.752600e-02	ci left: 3.475620e-04	ci right 3.834146e-04	k: 1614	n:4420000
STK11   4420000 perm   9662 sec   (457 perm/sec)   p_kst 3.651584e-04   p_cons 1.137986e-02   p_joint 2.332579e-04

Joint ci ratio: 1.218330e-01	ci left: 2.193984e-04	ci right 2.480787e-04	k: 1034	n:4430000
Cons ci ratio: 1.735658e-02	ci left: 1.128449e-02	ci right 1.148229e-02	k: 50427	n:4430000
KS ci ratio: 9.746568e-02	ci left: 3.472179e-04	ci right 3.830116e-04	k: 1616	n:4430000
STK11   4430000 perm   9704 sec   (457 perm/sec)   p_kst 3.647856e-04   p_cons 1.138307e-02   p_joint 2.334086e-04

Joint ci ratio: 1.217155e-01	ci left: 2.193410e-04	ci right 2.479841e-04	k: 1036	n:4440000
Cons ci ratio: 1.733890e-02	ci left: 1.128217e-02	ci right 1.147973e-02	k: 50530	n:4440000
KS ci ratio: 9.728533e-02	ci left: 3.477543e-04	ci right 3.835332e-04	k: 1622	n:4440000
STK11   4440000 perm   9745 sec   (456 perm/sec)   p_kst 3.653153e-04   p_cons 1.138063e-02   p_joint 2.333333e-04

Joint ci ratio: 1.215983e-01	ci left: 2.192838e-04	ci right 2.478899e-04	k: 1038	n:4450000
Cons ci ratio: 1.732301e-02	ci left: 1.127763e-02	ci right 1.147492e-02	k: 50623	n:4450000
KS ci ratio: 9.716567e-02	ci left: 3.478498e-04	ci right 3.835920e-04	k: 1626	n:4450000
STK11   4450000 perm   9787 sec   (455 perm/sec)   p_kst 3.653933e-04   p_cons 1.137596e-02   p_joint 2.332584e-04

Joint ci ratio: 1.215399e-01	ci left: 2.190095e-04	ci right 2.475652e-04	k: 1039	n:4460000
Cons ci ratio: 1.730543e-02	ci left: 1.127534e-02	ci right 1.147238e-02	k: 50726	n:4460000
KS ci ratio: 9.710602e-02	ci left: 3.475074e-04	ci right 3.831913e-04	k: 1628	n:4460000
STK11   4460000 perm   9828 sec   (454 perm/sec)   p_kst 3.650224e-04   p_cons 1.137354e-02   p_joint 2.329596e-04

Joint ci ratio: 1.214232e-01	ci left: 2.189534e-04	ci right 2.474723e-04	k: 1041	n:4470000
Cons ci ratio: 1.728774e-02	ci left: 1.127328e-02	ci right 1.147009e-02	k: 50830	n:4470000
KS ci ratio: 9.692765e-02	ci left: 3.480397e-04	ci right 3.837089e-04	k: 1634	n:4470000
STK11   4470000 perm   9870 sec   (453 perm/sec)   p_kst 3.655481e-04   p_cons 1.137136e-02   p_joint 2.328859e-04

Joint ci ratio: 1.213068e-01	ci left: 2.188976e-04	ci right 2.473799e-04	k: 1043	n:4480000
Cons ci ratio: 1.726633e-02	ci left: 1.127612e-02	ci right 1.147273e-02	k: 50956	n:4480000
KS ci ratio: 9.683886e-02	ci left: 3.479163e-04	ci right 3.835382e-04	k: 1637	n:4480000
STK11   4480000 perm   9912 sec   (452 perm/sec)   p_kst 3.654018e-04   p_cons 1.137411e-02   p_joint 2.328125e-04

Joint ci ratio: 1.211908e-01	ci left: 2.188420e-04	ci right 2.472879e-04	k: 1045	n:4490000
Cons ci ratio: 1.725183e-02	ci left: 1.127007e-02	ci right 1.146641e-02	k: 51042	n:4490000
KS ci ratio: 9.675031e-02	ci left: 3.477934e-04	ci right 3.833684e-04	k: 1640	n:4490000
STK11   4490000 perm   9954 sec   (451 perm/sec)   p_kst 3.652561e-04   p_cons 1.136793e-02   p_joint 2.327394e-04

Joint ci ratio: 1.210751e-01	ci left: 2.187866e-04	ci right 2.471963e-04	k: 1047	n:4500000
Cons ci ratio: 1.723447e-02	ci left: 1.126782e-02	ci right 1.146392e-02	k: 51145	n:4500000
KS ci ratio: 9.672087e-02	ci left: 3.472374e-04	ci right 3.827440e-04	k: 1641	n:4500000
STK11   4500000 perm   9996 sec   (450 perm/sec)   p_kst 3.646667e-04   p_cons 1.136556e-02   p_joint 2.326667e-04

Joint ci ratio: 1.210174e-01	ci left: 2.185165e-04	ci right 2.468766e-04	k: 1048	n:4510000
Cons ci ratio: 1.721734e-02	ci left: 1.126535e-02	ci right 1.146122e-02	k: 51247	n:4510000
KS ci ratio: 9.666204e-02	ci left: 3.469002e-04	ci right 3.823496e-04	k: 1643	n:4510000
STK11   4510000 perm   10037 sec   (449 perm/sec)   p_kst 3.643016e-04   p_cons 1.136297e-02   p_joint 2.323725e-04

Joint ci ratio: 1.208447e-01	ci left: 2.186767e-04	ci right 2.470142e-04	k: 1051	n:4520000
Cons ci ratio: 1.719754e-02	ci left: 1.126643e-02	ci right 1.146208e-02	k: 51365	n:4520000
KS ci ratio: 9.654465e-02	ci left: 3.469963e-04	ci right 3.824100e-04	k: 1647	n:4520000
STK11   4520000 perm   10080 sec   (448 perm/sec)   p_kst 3.643805e-04   p_cons 1.136394e-02   p_joint 2.325221e-04

Joint ci ratio: 1.185560e-01	ci left: 2.269739e-04	ci right 2.557905e-04	k: 1092	n:4530000
Cons ci ratio: 1.718001e-02	ci left: 1.126463e-02	ci right 1.146005e-02	k: 51470	n:4530000
KS ci ratio: 9.755665e-02	ci left: 3.389068e-04	ci right 3.738783e-04	k: 1613	n:4530000
STK11   4530000 perm   10122 sec   (448 perm/sec)   p_kst 3.560706e-04   p_cons 1.136203e-02   p_joint 2.410596e-04

Joint ci ratio: 1.184477e-01	ci left: 2.269014e-04	ci right 2.556806e-04	k: 1094	n:4540000
Cons ci ratio: 1.716219e-02	ci left: 1.126329e-02	ci right 1.145848e-02	k: 51577	n:4540000
KS ci ratio: 9.746611e-02	ci left: 3.388050e-04	ci right 3.737317e-04	k: 1616	n:4540000
STK11   4540000 perm   10164 sec   (447 perm/sec)   p_kst 3.559471e-04   p_cons 1.136057e-02   p_joint 2.409692e-04

Joint ci ratio: 1.182858e-01	ci left: 2.270425e-04	ci right 2.557976e-04	k: 1097	n:4550000
Cons ci ratio: 1.714510e-02	ci left: 1.126107e-02	ci right 1.145603e-02	k: 51680	n:4550000
KS ci ratio: 9.734578e-02	ci left: 3.389181e-04	ci right 3.738108e-04	k: 1620	n:4550000
STK11   4550000 perm   10206 sec   (446 perm/sec)   p_kst 3.560440e-04   p_cons 1.135824e-02   p_joint 2.410989e-04

Joint ci ratio: 1.182858e-01	ci left: 2.265446e-04	ci right 2.552366e-04	k: 1097	n:4560000
Cons ci ratio: 1.712288e-02	ci left: 1.126564e-02	ci right 1.146042e-02	k: 51814	n:4560000
KS ci ratio: 9.719598e-02	ci left: 3.392447e-04	ci right 3.741142e-04	k: 1625	n:4560000
STK11   4560000 perm   10248 sec   (445 perm/sec)   p_kst 3.563596e-04   p_cons 1.136272e-02   p_joint 2.405702e-04

Joint ci ratio: 1.181782e-01	ci left: 2.264736e-04	ci right 2.551287e-04	k: 1099	n:4570000
Cons ci ratio: 1.710707e-02	ci left: 1.126190e-02	ci right 1.145644e-02	k: 51910	n:4570000
KS ci ratio: 9.707664e-02	ci left: 3.393564e-04	ci right 3.741921e-04	k: 1629	n:4570000
STK11   4570000 perm   10291 sec   (444 perm/sec)   p_kst 3.564551e-04   p_cons 1.135886e-02   p_joint 2.404814e-04

Joint ci ratio: 1.179639e-01	ci left: 2.268267e-04	ci right 2.554708e-04	k: 1103	n:4580000
Cons ci ratio: 1.708815e-02	ci left: 1.126232e-02	ci right 1.145664e-02	k: 52025	n:4580000
KS ci ratio: 9.695775e-02	ci left: 3.394676e-04	ci right 3.742696e-04	k: 1633	n:4580000
STK11   4580000 perm   10334 sec   (443 perm/sec)   p_kst 3.565502e-04   p_cons 1.135917e-02   p_joint 2.408297e-04

Joint ci ratio: 1.191574e-01	ci left: 2.216816e-04	ci right 2.499791e-04	k: 1081	n:4590000
Cons ci ratio: 1.706995e-02	ci left: 1.126186e-02	ci right 1.145597e-02	k: 52136	n:4590000
KS ci ratio: 9.689848e-02	ci left: 3.391532e-04	ci right 3.739005e-04	k: 1635	n:4590000
STK11   4590000 perm   10377 sec   (442 perm/sec)   p_kst 3.562092e-04   p_cons 1.135861e-02   p_joint 2.355120e-04

Joint ci ratio: 1.189926e-01	ci left: 2.218324e-04	ci right 2.501073e-04	k: 1084	n:4600000
Cons ci ratio: 1.705396e-02	ci left: 1.125859e-02	ci right 1.145246e-02	k: 52234	n:4600000
KS ci ratio: 9.680976e-02	ci left: 3.390523e-04	ci right 3.737556e-04	k: 1638	n:4600000
STK11   4600000 perm   10420 sec   (441 perm/sec)   p_kst 3.560870e-04   p_cons 1.135522e-02   p_joint 2.356522e-04

Joint ci ratio: 1.189926e-01	ci left: 2.213512e-04	ci right 2.495647e-04	k: 1084	n:4610000
Cons ci ratio: 1.703653e-02	ci left: 1.125728e-02	ci right 1.145093e-02	k: 52341	n:4610000
KS ci ratio: 9.675077e-02	ci left: 3.387401e-04	ci right 3.733892e-04	k: 1640	n:4610000
STK11   4610000 perm   10463 sec   (441 perm/sec)   p_kst 3.557484e-04   p_cons 1.135380e-02   p_joint 2.351410e-04

Joint ci ratio: 1.188831e-01	ci left: 2.212921e-04	ci right 2.494703e-04	k: 1086	n:4620000
Cons ci ratio: 1.701916e-02	ci left: 1.125598e-02	ci right 1.144940e-02	k: 52448	n:4620000
KS ci ratio: 9.663306e-02	ci left: 3.388518e-04	ci right 3.734678e-04	k: 1644	n:4620000
STK11   4620000 perm   10506 sec   (440 perm/sec)   p_kst 3.558442e-04   p_cons 1.135238e-02   p_joint 2.350649e-04

Joint ci ratio: 1.188285e-01	ci left: 2.210237e-04	ci right 2.491539e-04	k: 1087	n:4630000
Cons ci ratio: 1.699939e-02	ci left: 1.125790e-02	ci right 1.145113e-02	k: 52570	n:4630000
KS ci ratio: 9.654507e-02	ci left: 3.387522e-04	ci right 3.733247e-04	k: 1647	n:4630000
STK11   4630000 perm   10549 sec   (439 perm/sec)   p_kst 3.557235e-04   p_cons 1.135421e-02   p_joint 2.347732e-04

Joint ci ratio: 1.187194e-01	ci left: 2.209656e-04	ci right 2.490608e-04	k: 1089	n:4640000
Cons ci ratio: 1.698000e-02	ci left: 1.125939e-02	ci right 1.145242e-02	k: 52690	n:4640000
KS ci ratio: 9.648656e-02	ci left: 3.384428e-04	ci right 3.729616e-04	k: 1649	n:4640000
STK11   4640000 perm   10592 sec   (438 perm/sec)   p_kst 3.553879e-04   p_cons 1.135560e-02   p_joint 2.346983e-04

Joint ci ratio: 1.186107e-01	ci left: 2.209078e-04	ci right 2.489680e-04	k: 1091	n:4650000
Cons ci ratio: 1.696345e-02	ci left: 1.125724e-02	ci right 1.145004e-02	k: 52793	n:4650000
KS ci ratio: 9.642815e-02	ci left: 3.381347e-04	ci right 3.726000e-04	k: 1651	n:4650000
STK11   4650000 perm   10635 sec   (437 perm/sec)   p_kst 3.550538e-04   p_cons 1.135333e-02   p_joint 2.346237e-04

Joint ci ratio: 1.185564e-01	ci left: 2.206419e-04	ci right 2.486547e-04	k: 1092	n:4660000
Cons ci ratio: 1.694452e-02	ci left: 1.125829e-02	ci right 1.145090e-02	k: 52911	n:4660000
KS ci ratio: 9.636985e-02	ci left: 3.378279e-04	ci right 3.722400e-04	k: 1653	n:4660000
STK11   4660000 perm   10679 sec   (436 perm/sec)   p_kst 3.547210e-04   p_cons 1.135429e-02   p_joint 2.343348e-04

Joint ci ratio: 1.185022e-01	ci left: 2.203772e-04	ci right 2.483428e-04	k: 1093	n:4670000
Cons ci ratio: 1.693114e-02	ci left: 1.125210e-02	ci right 1.144444e-02	k: 52995	n:4670000
KS ci ratio: 9.622450e-02	ci left: 3.381494e-04	ci right 3.725393e-04	k: 1658	n:4670000
STK11   4670000 perm   10723 sec   (436 perm/sec)   p_kst 3.550321e-04   p_cons 1.134797e-02   p_joint 2.340471e-04

Joint ci ratio: 1.183941e-01	ci left: 2.203210e-04	ci right 2.482521e-04	k: 1095	n:4680000
Cons ci ratio: 1.691473e-02	ci left: 1.124997e-02	ci right 1.144209e-02	k: 53098	n:4680000
KS ci ratio: 9.616657e-02	ci left: 3.378439e-04	ci right 3.721809e-04	k: 1660	n:4680000
STK11   4680000 perm   10766 sec   (435 perm/sec)   p_kst 3.547009e-04   p_cons 1.134573e-02   p_joint 2.339744e-04

Joint ci ratio: 1.182862e-01	ci left: 2.202651e-04	ci right 2.481619e-04	k: 1097	n:4690000
Cons ci ratio: 1.689676e-02	ci left: 1.124997e-02	ci right 1.144189e-02	k: 53211	n:4690000
KS ci ratio: 9.602214e-02	ci left: 3.381640e-04	ci right 3.724791e-04	k: 1665	n:4690000
STK11   4690000 perm   10809 sec   (434 perm/sec)   p_kst 3.550107e-04   p_cons 1.134563e-02   p_joint 2.339019e-04

Joint ci ratio: 1.181786e-01	ci left: 2.202094e-04	ci right 2.480720e-04	k: 1099	n:4700000
Cons ci ratio: 1.688077e-02	ci left: 1.124744e-02	ci right 1.143912e-02	k: 53312	n:4700000
KS ci ratio: 9.593581e-02	ci left: 3.380675e-04	ci right 3.723402e-04	k: 1668	n:4700000
STK11   4700000 perm   10852 sec   (433 perm/sec)   p_kst 3.548936e-04   p_cons 1.134298e-02   p_joint 2.338298e-04

Joint ci ratio: 1.181249e-01	ci left: 2.199479e-04	ci right 2.477639e-04	k: 1100	n:4710000
Cons ci ratio: 1.686115e-02	ci left: 1.124977e-02	ci right 1.144128e-02	k: 53436	n:4710000
KS ci ratio: 9.582105e-02	ci left: 3.381786e-04	ci right 3.724193e-04	k: 1672	n:4710000
STK11   4710000 perm   10896 sec   (432 perm/sec)   p_kst 3.549894e-04   p_cons 1.134522e-02   p_joint 2.335456e-04

Joint ci ratio: 1.179643e-01	ci left: 2.200987e-04	ci right 2.478933e-04	k: 1103	n:4720000
Cons ci ratio: 1.684176e-02	ci left: 1.125189e-02	ci right 1.144321e-02	k: 53559	n:4720000
KS ci ratio: 9.562118e-02	ci left: 3.389097e-04	ci right 3.731488e-04	k: 1679	n:4720000
STK11   4720000 perm   10940 sec   (431 perm/sec)   p_kst 3.557203e-04   p_cons 1.134725e-02   p_joint 2.336864e-04

Joint ci ratio: 1.178576e-01	ci left: 2.200438e-04	ci right 2.478045e-04	k: 1105	n:4730000
Cons ci ratio: 1.682260e-02	ci left: 1.125378e-02	ci right 1.144491e-02	k: 53681	n:4730000
KS ci ratio: 9.553592e-02	ci left: 3.388123e-04	ci right 3.730093e-04	k: 1682	n:4730000
STK11   4730000 perm   10983 sec   (431 perm/sec)   p_kst 3.556025e-04   p_cons 1.134905e-02   p_joint 2.336152e-04

Joint ci ratio: 1.176451e-01	ci left: 2.203986e-04	ci right 2.481504e-04	k: 1109	n:4740000
Cons ci ratio: 1.680556e-02	ci left: 1.125294e-02	ci right 1.144386e-02	k: 53790	n:4740000
KS ci ratio: 9.539431e-02	ci left: 3.391272e-04	ci right 3.733024e-04	k: 1687	n:4740000
STK11   4740000 perm   11027 sec   (430 perm/sec)   p_kst 3.559072e-04   p_cons 1.134810e-02   p_joint 2.339662e-04

Joint ci ratio: 1.174864e-01	ci left: 2.205476e-04	ci right 2.482782e-04	k: 1112	n:4750000
Cons ci ratio: 1.678966e-02	ci left: 1.125063e-02	ci right 1.144133e-02	k: 53892	n:4750000
KS ci ratio: 9.530966e-02	ci left: 3.390297e-04	ci right 3.731631e-04	k: 1690	n:4750000
STK11   4750000 perm   11071 sec   (429 perm/sec)   p_kst 3.557895e-04   p_cons 1.134568e-02   p_joint 2.341053e-04

Joint ci ratio: 1.174337e-01	ci left: 2.202881e-04	ci right 2.479728e-04	k: 1113	n:4760000
Cons ci ratio: 1.677351e-02	ci left: 1.124875e-02	ci right 1.143924e-02	k: 53996	n:4760000
KS ci ratio: 9.519712e-02	ci left: 3.391378e-04	ci right 3.732395e-04	k: 1694	n:4760000
STK11   4760000 perm   11115 sec   (428 perm/sec)   p_kst 3.558824e-04   p_cons 1.134370e-02   p_joint 2.338235e-04

Joint ci ratio: 1.172758e-01	ci left: 2.204368e-04	ci right 2.481003e-04	k: 1116	n:4770000
Cons ci ratio: 1.675442e-02	ci left: 1.125085e-02	ci right 1.144115e-02	k: 54119	n:4770000
KS ci ratio: 9.500113e-02	ci left: 3.398594e-04	ci right 3.739594e-04	k: 1701	n:4770000
STK11   4770000 perm   11160 sec   (427 perm/sec)   p_kst 3.566038e-04   p_cons 1.134570e-02   p_joint 2.339623e-04

Joint ci ratio: 1.169100e-01	ci left: 2.213972e-04	ci right 2.490886e-04	k: 1123	n:4780000
Cons ci ratio: 1.673617e-02	ci left: 1.125190e-02	ci right 1.144200e-02	k: 54237	n:4780000
KS ci ratio: 9.480633e-02	ci left: 3.405781e-04	ci right 3.746762e-04	k: 1708	n:4780000
STK11   4780000 perm   11204 sec   (427 perm/sec)   p_kst 3.573222e-04   p_cons 1.134665e-02   p_joint 2.349372e-04

Joint ci ratio: 1.167543e-01	ci left: 2.215430e-04	ci right 2.492132e-04	k: 1126	n:4790000
Cons ci ratio: 1.671970e-02	ci left: 1.125065e-02	ci right 1.144055e-02	k: 54344	n:4790000
KS ci ratio: 9.469557e-02	ci left: 3.406824e-04	ci right 3.747489e-04	k: 1712	n:4790000
STK11   4790000 perm   11248 sec   (426 perm/sec)   p_kst 3.574113e-04   p_cons 1.134530e-02   p_joint 2.350731e-04

Joint ci ratio: 1.167026e-01	ci left: 2.212837e-04	ci right 2.489084e-04	k: 1127	n:4800000
Cons ci ratio: 1.669831e-02	ci left: 1.125605e-02	ci right 1.144579e-02	k: 54483	n:4800000
KS ci ratio: 9.466797e-02	ci left: 3.401760e-04	ci right 3.741814e-04	k: 1713	n:4800000
STK11   4800000 perm   11293 sec   (425 perm/sec)   p_kst 3.568750e-04   p_cons 1.135062e-02   p_joint 2.347917e-04

Joint ci ratio: 1.165993e-01	ci left: 2.212273e-04	ci right 2.488188e-04	k: 1129	n:4810000
Cons ci ratio: 1.667917e-02	ci left: 1.125853e-02	ci right 1.144809e-02	k: 54608	n:4810000
KS ci ratio: 9.461280e-02	ci left: 3.398748e-04	ci right 3.738291e-04	k: 1715	n:4810000
STK11   4810000 perm   11337 sec   (424 perm/sec)   p_kst 3.565489e-04   p_cons 1.135301e-02   p_joint 2.347193e-04

Joint ci ratio: 1.164962e-01	ci left: 2.211712e-04	ci right 2.487297e-04	k: 1131	n:4820000
Cons ci ratio: 1.666256e-02	ci left: 1.125769e-02	ci right 1.144705e-02	k: 54717	n:4820000
KS ci ratio: 9.453021e-02	ci left: 3.397773e-04	ci right 3.736907e-04	k: 1718	n:4820000
STK11   4820000 perm   11382 sec   (423 perm/sec)   p_kst 3.564315e-04   p_cons 1.135207e-02   p_joint 2.346473e-04

Joint ci ratio: 1.163934e-01	ci left: 2.211153e-04	ci right 2.486408e-04	k: 1133	n:4830000
Cons ci ratio: 1.664738e-02	ci left: 1.125500e-02	ci right 1.144414e-02	k: 54817	n:4830000
KS ci ratio: 9.439302e-02	ci left: 3.400846e-04	ci right 3.739766e-04	k: 1723	n:4830000
STK11   4830000 perm   11427 sec   (423 perm/sec)   p_kst 3.567288e-04   p_cons 1.134928e-02   p_joint 2.345756e-04

Joint ci ratio: 1.162909e-01	ci left: 2.210596e-04	ci right 2.485523e-04	k: 1135	n:4840000
Cons ci ratio: 1.662810e-02	ci left: 1.125787e-02	ci right 1.144684e-02	k: 54944	n:4840000
KS ci ratio: 9.431100e-02	ci left: 3.399871e-04	ci right 3.738384e-04	k: 1726	n:4840000
STK11   4840000 perm   11472 sec   (422 perm/sec)   p_kst 3.566116e-04   p_cons 1.135207e-02   p_joint 2.345041e-04

Joint ci ratio: 1.161887e-01	ci left: 2.210042e-04	ci right 2.484642e-04	k: 1137	n:4850000
Cons ci ratio: 1.661317e-02	ci left: 1.125499e-02	ci right 1.144374e-02	k: 55043	n:4850000
KS ci ratio: 9.425645e-02	ci left: 3.396888e-04	ci right 3.734897e-04	k: 1728	n:4850000
STK11   4850000 perm   11517 sec   (421 perm/sec)   p_kst 3.562887e-04   p_cons 1.134907e-02   p_joint 2.344330e-04

Joint ci ratio: 1.160868e-01	ci left: 2.209490e-04	ci right 2.483764e-04	k: 1139	n:4860000
Cons ci ratio: 1.659538e-02	ci left: 1.125601e-02	ci right 1.144457e-02	k: 55161	n:4860000
KS ci ratio: 9.422923e-02	ci left: 3.391907e-04	ci right 3.729318e-04	k: 1729	n:4860000
STK11   4860000 perm   11562 sec   (420 perm/sec)   p_kst 3.557613e-04   p_cons 1.135000e-02   p_joint 2.343621e-04

Joint ci ratio: 1.159851e-01	ci left: 2.208941e-04	ci right 2.482890e-04	k: 1141	n:4870000
Cons ci ratio: 1.657932e-02	ci left: 1.125478e-02	ci right 1.144313e-02	k: 55268	n:4870000
KS ci ratio: 9.406623e-02	ci left: 3.396973e-04	ci right 3.734271e-04	k: 1735	n:4870000
STK11   4870000 perm   11608 sec   (420 perm/sec)   p_kst 3.562628e-04   p_cons 1.134867e-02   p_joint 2.342916e-04

Joint ci ratio: 1.157319e-01	ci left: 2.214363e-04	ci right 2.488345e-04	k: 1146	n:4880000
Cons ci ratio: 1.656210e-02	ci left: 1.125518e-02	ci right 1.144335e-02	k: 55383	n:4880000
KS ci ratio: 9.398506e-02	ci left: 3.396015e-04	ci right 3.732911e-04	k: 1738	n:4880000
STK11   4880000 perm   11654 sec   (419 perm/sec)   p_kst 3.561475e-04   p_cons 1.134898e-02   p_joint 2.348361e-04

Joint ci ratio: 1.156815e-01	ci left: 2.211821e-04	ci right 2.485361e-04	k: 1147	n:4890000
Cons ci ratio: 1.654749e-02	ci left: 1.125212e-02	ci right 1.144007e-02	k: 55481	n:4890000
KS ci ratio: 9.393108e-02	ci left: 3.393064e-04	ci right 3.729463e-04	k: 1740	n:4890000
STK11   4890000 perm   11699 sec   (418 perm/sec)   p_kst 3.558282e-04   p_cons 1.134581e-02   p_joint 2.345603e-04

Joint ci ratio: 1.155809e-01	ci left: 2.211271e-04	ci right 2.484488e-04	k: 1149	n:4900000
Cons ci ratio: 1.653232e-02	ci left: 1.124989e-02	ci right 1.143763e-02	k: 55583	n:4900000
KS ci ratio: 9.379647e-02	ci left: 3.396104e-04	ci right 3.732295e-04	k: 1745	n:4900000
STK11   4900000 perm   11744 sec   (417 perm/sec)   p_kst 3.561224e-04   p_cons 1.134347e-02   p_joint 2.344898e-04

Joint ci ratio: 1.155307e-01	ci left: 2.208745e-04	ci right 2.481524e-04	k: 1150	n:4910000
Cons ci ratio: 1.651584e-02	ci left: 1.124949e-02	ci right 1.143703e-02	k: 55694	n:4910000
KS ci ratio: 9.374281e-02	ci left: 3.393165e-04	ci right 3.728863e-04	k: 1747	n:4910000
STK11   4910000 perm   11790 sec   (416 perm/sec)   p_kst 3.558045e-04   p_cons 1.134297e-02   p_joint 2.342159e-04

Joint ci ratio: 1.155307e-01	ci left: 2.204255e-04	ci right 2.476480e-04	k: 1150	n:4920000
Cons ci ratio: 1.649777e-02	ci left: 1.125132e-02	ci right 1.143869e-02	k: 55816	n:4920000
KS ci ratio: 9.366248e-02	ci left: 3.392223e-04	ci right 3.727524e-04	k: 1750	n:4920000
STK11   4920000 perm   11836 sec   (416 perm/sec)   p_kst 3.556911e-04   p_cons 1.134472e-02   p_joint 2.337398e-04

Joint ci ratio: 1.154305e-01	ci left: 2.203724e-04	ci right 2.475630e-04	k: 1152	n:4930000
Cons ci ratio: 1.648169e-02	ci left: 1.125052e-02	ci right 1.143768e-02	k: 55925	n:4930000
KS ci ratio: 9.355568e-02	ci left: 3.393266e-04	ci right 3.728267e-04	k: 1754	n:4930000
STK11   4930000 perm   11881 sec   (415 perm/sec)   p_kst 3.557809e-04   p_cons 1.134381e-02   p_joint 2.336714e-04

Joint ci ratio: 1.058153e-01	ci left: 2.630343e-04	ci right 2.926173e-04	k: 1371	n:4940000
Cons ci ratio: 1.646521e-02	ci left: 1.125032e-02	ci right 1.143730e-02	k: 56037	n:4940000
KS ci ratio: 9.352906e-02	ci left: 3.388374e-04	ci right 3.722791e-04	k: 1755	n:4940000
STK11   4940000 perm   11927 sec   (414 perm/sec)   p_kst 3.552632e-04   p_cons 1.134352e-02   p_joint 2.775304e-04

Joint ci ratio: 1.057768e-01	ci left: 2.626996e-04	ci right 2.922336e-04	k: 1372	n:4950000
Cons ci ratio: 1.644879e-02	ci left: 1.125013e-02	ci right 1.143691e-02	k: 56149	n:4950000
KS ci ratio: 9.342271e-02	ci left: 3.389420e-04	ci right 3.723540e-04	k: 1759	n:4950000
STK11   4950000 perm   11972 sec   (413 perm/sec)   p_kst 3.553535e-04   p_cons 1.134323e-02   p_joint 2.771717e-04

Joint ci ratio: 1.056999e-01	ci left: 2.625625e-04	ci right 2.920583e-04	k: 1374	n:4960000
Cons ci ratio: 1.643211e-02	ci left: 1.125033e-02	ci right 1.143693e-02	k: 56263	n:4960000
KS ci ratio: 9.334320e-02	ci left: 3.388494e-04	ci right 3.722223e-04	k: 1762	n:4960000
STK11   4960000 perm   12019 sec   (413 perm/sec)   p_kst 3.552419e-04   p_cons 1.134335e-02   p_joint 2.770161e-04

Joint ci ratio: 1.056615e-01	ci left: 2.622301e-04	ci right 2.916771e-04	k: 1375	n:4970000
Cons ci ratio: 1.641564e-02	ci left: 1.125034e-02	ci right 1.143675e-02	k: 56376	n:4970000
KS ci ratio: 9.329031e-02	ci left: 3.385606e-04	ci right 3.718851e-04	k: 1764	n:4970000
STK11   4970000 perm   12065 sec   (412 perm/sec)   p_kst 3.549296e-04   p_cons 1.134326e-02   p_joint 2.766600e-04

Joint ci ratio: 1.054700e-01	ci left: 2.626810e-04	ci right 2.921220e-04	k: 1380	n:4980000
Cons ci ratio: 1.639921e-02	ci left: 1.125035e-02	ci right 1.143657e-02	k: 56489	n:4980000
KS ci ratio: 9.315844e-02	ci left: 3.388614e-04	ci right 3.721658e-04	k: 1769	n:4980000
STK11   4980000 perm   12111 sec   (411 perm/sec)   p_kst 3.552209e-04   p_cons 1.134317e-02   p_joint 2.771084e-04

Joint ci ratio: 1.053937e-01	ci left: 2.625449e-04	ci right 2.919479e-04	k: 1382	n:4990000
Cons ci ratio: 1.638327e-02	ci left: 1.124976e-02	ci right 1.143578e-02	k: 56599	n:4990000
KS ci ratio: 9.305335e-02	ci left: 3.389653e-04	ci right 3.722402e-04	k: 1773	n:4990000
STK11   4990000 perm   12157 sec   (410 perm/sec)   p_kst 3.553106e-04   p_cons 1.134248e-02   p_joint 2.769539e-04

Joint ci ratio: 1.015720e-01	ci left: 2.826714e-04	ci right 3.131121e-04	k: 1488	n:5000000
Cons ci ratio: 1.496927e-02	ci left: 1.342832e-02	ci right 1.363104e-02	k: 67647	n:5000000
KS ci ratio: 9.292248e-02	ci left: 3.392641e-04	ci right 3.725190e-04	k: 1778	n:5000000
STK11   5000000 perm   12203 sec   (410 perm/sec)   p_kst 3.556000e-04   p_cons 1.352940e-02   p_joint 2.976000e-04

Outputting figure to mutsig2_images.part000000000168/STK11.21_1338_5000000_0.0003556_0.013529_0.0002976.png
                gene_name: STK11
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.00036 
        ci_ks_bounds_left: 0.00034 
       ci_ks_bounds_right: 0.00037 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.00030 
     ci_joint_bounds_left: 0.00028 
    ci_joint_bounds_right: 0.00031 

Current progress: 2 percent done.
STARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
Cons ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
KS ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
STARD8   10000 perm   2 sec   (4232 perm/sec)   p_kst 1.752000e-01   p_cons 5.504000e-01   p_joint 4.236000e-01

Outputting figure to mutsig2_images.part000000000168/STARD8.12_3372_10000_0.1752_0.5504_0.4236.png
                gene_name: STARD8
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 3 percent done.
STK31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KS ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
STK31   10000 perm   2 sec   (4328 perm/sec)   p_kst 5.453000e-01   p_cons 1.059000e-01   p_joint 3.188000e-01

Joint ci ratio: 4.293792e-02	ci left: 2.877906e-01	ci right 3.004693e-01	k: 5882	n:20000
Cons ci ratio: 8.017988e-02	ci left: 1.024537e-01	ci right 1.110610e-01	k: 2134	n:20000
KS ci ratio: 2.527146e-02	ci left: 5.391187e-01	ci right 5.529680e-01	k: 10921	n:20000
STK31   20000 perm   5 sec   (3883 perm/sec)   p_kst 5.460500e-01   p_cons 1.067000e-01   p_joint 2.941000e-01

Outputting figure to mutsig2_images.part000000000168/STK31.10_3156_20000_0.54605_0.1067_0.2941.png
                gene_name: STK31
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 5 percent done.
STON1-GTF2A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
Cons ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
KS ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
STON1-GTF2A1L   10000 perm   2 sec   (4261 perm/sec)   p_kst 9.268000e-01   p_cons 1.637000e-01   p_joint 4.854000e-01

Outputting figure to mutsig2_images.part000000000168/STON1-GTF2A1L.9_3589_10000_0.9268_0.1637_0.4854.png
                gene_name: STON1-GTF2A1L
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 7 percent done.
STAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
STAT3   10000 perm   2 sec   (4762 perm/sec)   p_kst 3.626000e-01   p_cons 7.470000e-01   p_joint 4.727000e-01

Outputting figure to mutsig2_images.part000000000168/STAT3.8_2405_10000_0.3626_0.747_0.4727.png
                gene_name: STAT3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 8 percent done.
STX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
STX2   10000 perm   2 sec   (5175 perm/sec)   p_kst 1.295000e-01   p_cons 1.100000e-02   p_joint 3.150000e-02

Joint ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
Cons ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
KS ci ratio: 7.186426e-02	ci left: 1.248267e-01	ci right 1.341813e-01	k: 2589	n:20000
STX2   20000 perm   4 sec   (4576 perm/sec)   p_kst 1.294500e-01   p_cons 1.035000e-02   p_joint 2.595000e-02

Joint ci ratio: 1.503145e-01	ci left: 2.049831e-02	ci right 2.386178e-02	k: 664	n:30000
Cons ci ratio: 2.248050e-01	ci left: 8.905068e-03	ci right 1.119132e-02	k: 300	n:30000
KS ci ratio: 5.883393e-02	ci left: 1.250947e-01	ci right 1.327107e-01	k: 3866	n:30000
STX2   30000 perm   7 sec   (4375 perm/sec)   p_kst 1.288667e-01   p_cons 1.000000e-02   p_joint 2.213333e-02

Joint ci ratio: 1.520240e-01	ci left: 1.510585e-02	ci right 1.761507e-02	k: 653	n:40000
Cons ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
KS ci ratio: 5.116278e-02	ci left: 1.246911e-01	ci right 1.312630e-01	k: 5118	n:40000
STX2   40000 perm   9 sec   (4221 perm/sec)   p_kst 1.279500e-01   p_cons 9.850000e-03   p_joint 1.632500e-02

Joint ci ratio: 1.147166e-01	ci left: 2.150942e-02	ci right 2.414639e-02	k: 1140	n:50000
Cons ci ratio: 1.769468e-01	ci left: 8.859481e-03	ci right 1.059815e-02	k: 485	n:50000
KS ci ratio: 4.470488e-02	ci left: 1.302924e-01	ci right 1.362702e-01	k: 6663	n:50000
STX2   50000 perm   12 sec   (4107 perm/sec)   p_kst 1.332600e-01   p_cons 9.700000e-03   p_joint 2.280000e-02

Joint ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
Cons ci ratio: 1.718233e-01	ci left: 7.860724e-03	ci right 9.354058e-03	k: 515	n:60000
KS ci ratio: 4.081219e-02	ci left: 1.305402e-01	ci right 1.359953e-01	k: 7995	n:60000
STX2   60000 perm   15 sec   (4025 perm/sec)   p_kst 1.332500e-01   p_cons 8.583333e-03   p_joint 1.911667e-02

Joint ci ratio: 1.083019e-01	ci left: 1.737556e-02	ci right 1.937893e-02	k: 1285	n:70000
Cons ci ratio: 1.605640e-01	ci left: 7.764634e-03	ci right 9.133724e-03	k: 590	n:70000
KS ci ratio: 3.803131e-02	ci left: 1.292597e-01	ci right 1.342851e-01	k: 9223	n:70000
STX2   70000 perm   18 sec   (3865 perm/sec)   p_kst 1.317571e-01   p_cons 8.428571e-03   p_joint 1.835714e-02

Joint ci ratio: 7.899363e-02	ci left: 2.868160e-02	ci right 3.105265e-02	k: 2388	n:80000
Cons ci ratio: 1.353567e-01	ci left: 9.672315e-03	ci right 1.108853e-02	k: 829	n:80000
KS ci ratio: 3.568570e-02	ci left: 1.287188e-01	ci right 1.334080e-01	k: 10484	n:80000
STX2   80000 perm   22 sec   (3657 perm/sec)   p_kst 1.310500e-01   p_cons 1.036250e-02   p_joint 2.985000e-02

Joint ci ratio: 7.349000e-02	ci left: 2.951711e-02	ci right 3.177994e-02	k: 2757	n:90000
Cons ci ratio: 1.271179e-01	ci left: 9.790518e-03	ci right 1.113021e-02	k: 940	n:90000
KS ci ratio: 3.372816e-02	ci left: 1.282946e-01	ci right 1.327070e-01	k: 11744	n:90000
STX2   90000 perm   25 sec   (3609 perm/sec)   p_kst 1.304889e-01   p_cons 1.044444e-02   p_joint 3.063333e-02

Joint ci ratio: 7.152603e-02	ci left: 2.811601e-02	ci right 3.021142e-02	k: 2915	n:100000
Cons ci ratio: 1.209197e-01	ci left: 9.770757e-03	ci right 1.103788e-02	k: 1039	n:100000
KS ci ratio: 3.207230e-02	ci left: 1.278816e-01	ci right 1.320599e-01	k: 12996	n:100000
STX2   100000 perm   28 sec   (3567 perm/sec)   p_kst 1.299600e-01   p_cons 1.039000e-02   p_joint 2.915000e-02

Joint ci ratio: 6.668772e-02	ci left: 2.943799e-02	ci right 3.147777e-02	k: 3349	n:110000
Cons ci ratio: 1.157535e-01	ci left: 9.720570e-03	ci right 1.092364e-02	k: 1134	n:110000
KS ci ratio: 3.057692e-02	ci left: 1.279998e-01	ci right 1.319834e-01	k: 14298	n:110000
STX2   110000 perm   31 sec   (3517 perm/sec)   p_kst 1.299818e-01   p_cons 1.030909e-02   p_joint 3.044545e-02

Joint ci ratio: 8.415923e-02	ci left: 1.701042e-02	ci right 1.851301e-02	k: 2130	n:120000
Cons ci ratio: 1.204429e-01	ci left: 8.222717e-03	ci right 9.284561e-03	k: 1049	n:120000
KS ci ratio: 2.930532e-02	ci left: 1.278536e-01	ci right 1.316643e-01	k: 15570	n:120000
STX2   120000 perm   35 sec   (3472 perm/sec)   p_kst 1.297500e-01   p_cons 8.741667e-03   p_joint 1.775000e-02

Joint ci ratio: 8.771453e-02	ci left: 1.446664e-02	ci right 1.580127e-02	k: 1966	n:130000
Cons ci ratio: 1.167842e-01	ci left: 8.090262e-03	ci right 9.101072e-03	k: 1116	n:130000
KS ci ratio: 2.817637e-02	ci left: 1.277634e-01	ci right 1.314224e-01	k: 16846	n:130000
STX2   130000 perm   38 sec   (3425 perm/sec)   p_kst 1.295846e-01   p_cons 8.584615e-03   p_joint 1.512308e-02

Joint ci ratio: 8.118888e-02	ci left: 1.571316e-02	ci right 1.704983e-02	k: 2292	n:140000
Cons ci ratio: 1.131987e-01	ci left: 8.011862e-03	ci right 8.980089e-03	k: 1188	n:140000
KS ci ratio: 2.714191e-02	ci left: 1.279087e-01	ci right 1.314352e-01	k: 18153	n:140000
STX2   140000 perm   41 sec   (3380 perm/sec)   p_kst 1.296643e-01   p_cons 8.485714e-03   p_joint 1.637143e-02

Joint ci ratio: 7.732015e-02	ci left: 1.619486e-02	ci right 1.750391e-02	k: 2526	n:150000
Cons ci ratio: 1.090555e-01	ci left: 8.074039e-03	ci right 9.011773e-03	k: 1280	n:150000
KS ci ratio: 2.619352e-02	ci left: 1.282091e-01	ci right 1.316185e-01	k: 19486	n:150000
STX2   150000 perm   45 sec   (3336 perm/sec)   p_kst 1.299067e-01   p_cons 8.533333e-03   p_joint 1.684000e-02

Joint ci ratio: 7.167787e-02	ci left: 1.769184e-02	ci right 1.901320e-02	k: 2935	n:160000
Cons ci ratio: 1.055303e-01	ci left: 8.098576e-03	ci right 9.006867e-03	k: 1367	n:160000
KS ci ratio: 2.536326e-02	ci left: 1.282501e-01	ci right 1.315509e-01	k: 20783	n:160000
STX2   160000 perm   49 sec   (3290 perm/sec)   p_kst 1.298938e-01   p_cons 8.543750e-03   p_joint 1.834375e-02

Joint ci ratio: 7.163043e-02	ci left: 1.669127e-02	ci right 1.793703e-02	k: 2942	n:170000
Cons ci ratio: 1.018682e-01	ci left: 8.195191e-03	ci right 9.080512e-03	k: 1467	n:170000
KS ci ratio: 2.459574e-02	ci left: 1.283930e-01	ci right 1.315961e-01	k: 22098	n:170000
STX2   170000 perm   52 sec   (3246 perm/sec)   p_kst 1.299882e-01   p_cons 8.629412e-03   p_joint 1.730588e-02

Joint ci ratio: 7.177715e-02	ci left: 1.571459e-02	ci right 1.688995e-02	k: 2933	n:180000
Cons ci ratio: 9.849921e-02	ci left: 8.292392e-03	ci right 9.156876e-03	k: 1569	n:180000
KS ci ratio: 2.391154e-02	ci left: 1.283556e-01	ci right 1.314674e-01	k: 23383	n:180000
STX2   180000 perm   56 sec   (3204 perm/sec)   p_kst 1.299056e-01   p_cons 8.716667e-03   p_joint 1.629444e-02

Outputting figure to mutsig2_images.part000000000168/STX2.8_989_180000_0.12991_0.0087167_0.016294.png
                gene_name: STX2
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.0087 
      ci_cons_bounds_left: 0.0083 
     ci_cons_bounds_right: 0.0092 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 10 percent done.
STT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
Cons ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
STT3A   10000 perm   2 sec   (4830 perm/sec)   p_kst 7.100000e-02   p_cons 5.102000e-01   p_joint 1.007000e-01

Joint ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
Cons ci ratio: 2.753420e-02	ci left: 4.963456e-01	ci right 5.102535e-01	k: 10066	n:20000
KS ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
STT3A   20000 perm   5 sec   (4288 perm/sec)   p_kst 7.160000e-02   p_cons 5.033000e-01   p_joint 7.970000e-02

Outputting figure to mutsig2_images.part000000000168/STT3A.7_2186_20000_0.0716_0.5033_0.0797.png
                gene_name: STT3A
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 12 percent done.
STAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
Cons ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
KS ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
STAT4   10000 perm   2 sec   (4786 perm/sec)   p_kst 2.336000e-01   p_cons 7.946000e-01   p_joint 3.452000e-01

Outputting figure to mutsig2_images.part000000000168/STAT4.6_2339_10000_0.2336_0.7946_0.3452.png
                gene_name: STAT4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 13 percent done.
STIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
Cons ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
KS ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
STIP1   10000 perm   2 sec   (5418 perm/sec)   p_kst 5.251000e-01   p_cons 1.415000e-01   p_joint 4.395000e-01

Outputting figure to mutsig2_images.part000000000168/STIP1.6_1688_10000_0.5251_0.1415_0.4395.png
                gene_name: STIP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 15 percent done.
STON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
STON2   10000 perm   2 sec   (4102 perm/sec)   p_kst 2.945000e-01   p_cons 4.870000e-02   p_joint 1.139000e-01

Joint ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
Cons ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
KS ci ratio: 4.111321e-02	ci left: 3.060291e-01	ci right 3.189255e-01	k: 6249	n:20000
STON2   20000 perm   5 sec   (3953 perm/sec)   p_kst 3.124500e-01   p_cons 4.800000e-02   p_joint 1.247500e-01

Joint ci ratio: 7.409546e-02	ci left: 8.216277e-02	ci right 8.851781e-02	k: 2559	n:30000
Cons ci ratio: 1.021000e-01	ci left: 4.443729e-02	ci right 4.925096e-02	k: 1404	n:30000
KS ci ratio: 3.461502e-02	ci left: 2.942535e-01	ci right 3.046520e-01	k: 8983	n:30000
STON2   30000 perm   8 sec   (3869 perm/sec)   p_kst 2.994333e-01   p_cons 4.680000e-02   p_joint 8.530000e-02

Joint ci ratio: 5.873419e-02	ci left: 9.724937e-02	ci right 1.031588e-01	k: 4007	n:40000
Cons ci ratio: 8.674253e-02	ci left: 4.646411e-02	ci right 5.070174e-02	k: 1942	n:40000
KS ci ratio: 2.985058e-02	ci left: 2.967310e-01	ci right 3.057479e-01	k: 12049	n:40000
STON2   40000 perm   11 sec   (3788 perm/sec)   p_kst 3.012250e-01   p_cons 4.855000e-02   p_joint 1.001750e-01

Outputting figure to mutsig2_images.part000000000168/STON2.6_2736_40000_0.30123_0.04855_0.10018.png
                gene_name: STON2
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 17 percent done.
STOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
Cons ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
STOX1   10000 perm   2 sec   (4819 perm/sec)   p_kst 4.740000e-02   p_cons 8.588000e-01   p_joint 2.532000e-01

Joint ci ratio: 6.101931e-02	ci left: 1.658050e-01	ci right 1.762908e-01	k: 3420	n:20000
Cons ci ratio: 1.077012e-02	ci left: 8.640930e-01	ci right 8.734995e-01	k: 17377	n:20000
KS ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
STOX1   20000 perm   5 sec   (4314 perm/sec)   p_kst 5.190000e-02   p_cons 8.688500e-01   p_joint 1.710000e-01

Joint ci ratio: 5.670637e-02	ci left: 1.334899e-01	ci right 1.413138e-01	k: 4121	n:30000
Cons ci ratio: 9.143285e-03	ci left: 8.557185e-01	ci right 8.636117e-01	k: 25791	n:30000
KS ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
STOX1   30000 perm   7 sec   (4124 perm/sec)   p_kst 5.126667e-02   p_cons 8.597000e-01   p_joint 1.373667e-01

Outputting figure to mutsig2_images.part000000000168/STOX1.6_2986_30000_0.051267_0.8597_0.13737.png
                gene_name: STOX1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
STRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
Cons ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
KS ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
STRN   10000 perm   2 sec   (5042 perm/sec)   p_kst 4.422000e-01   p_cons 9.429000e-01   p_joint 5.741000e-01

Outputting figure to mutsig2_images.part000000000168/STRN.6_2415_10000_0.4422_0.9429_0.5741.png
                gene_name: STRN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 20 percent done.
STAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 2.520978e-02	ci left: 6.983735e-01	ci right 7.163055e-01	k: 7074	n:10000
KS ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
STAT2   10000 perm   2 sec   (4713 perm/sec)   p_kst 6.204000e-01   p_cons 7.074000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000168/STAT2.5_2648_10000_0.6204_0.7074_0.7239.png
                gene_name: STAT2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 22 percent done.
STIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
Cons ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
KS ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
STIL   10000 perm   2 sec   (4593 perm/sec)   p_kst 7.958000e-01   p_cons 1.132000e-01   p_joint 4.173000e-01

Joint ci ratio: 3.893108e-02	ci left: 3.298013e-01	ci right 3.429463e-01	k: 6727	n:20000
Cons ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
KS ci ratio: 1.350568e-02	ci left: 8.026233e-01	ci right 8.135870e-01	k: 16163	n:20000
STIL   20000 perm   5 sec   (4073 perm/sec)   p_kst 8.081500e-01   p_cons 1.134000e-01   p_joint 3.363500e-01

Outputting figure to mutsig2_images.part000000000168/STIL.5_3931_20000_0.80815_0.1134_0.33635.png
                gene_name: STIL
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 23 percent done.
STIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
STIM1   10000 perm   2 sec   (4728 perm/sec)   p_kst 8.200000e-03   p_cons 2.060000e-02   p_joint 1.030000e-02

Joint ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
Cons ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
KS ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
STIM1   20000 perm   5 sec   (4289 perm/sec)   p_kst 8.250000e-03   p_cons 2.035000e-02   p_joint 1.815000e-02

Joint ci ratio: 1.468512e-01	ci left: 2.149402e-02	ci right 2.493250e-02	k: 695	n:30000
Cons ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
KS ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
STIM1   30000 perm   7 sec   (4105 perm/sec)   p_kst 8.500000e-03   p_cons 2.010000e-02   p_joint 2.316667e-02

Joint ci ratio: 1.463272e-01	ci left: 1.633401e-02	ci right 1.893669e-02	k: 704	n:40000
Cons ci ratio: 1.379925e-01	ci left: 1.840890e-02	ci right 2.116144e-02	k: 790	n:40000
KS ci ratio: 2.139160e-01	ci left: 7.434246e-03	ci right 9.238224e-03	k: 332	n:40000
STIM1   40000 perm   10 sec   (3966 perm/sec)   p_kst 8.300000e-03   p_cons 1.975000e-02   p_joint 1.760000e-02

Joint ci ratio: 1.455463e-01	ci left: 1.325834e-02	ci right 1.535860e-02	k: 714	n:50000
Cons ci ratio: 1.248984e-01	ci left: 1.811207e-02	ci right 2.054419e-02	k: 965	n:50000
KS ci ratio: 1.900138e-01	ci left: 7.637733e-03	ci right 9.260113e-03	k: 421	n:50000
STIM1   50000 perm   13 sec   (3882 perm/sec)   p_kst 8.420000e-03   p_cons 1.930000e-02   p_joint 1.428000e-02

Joint ci ratio: 1.569985e-01	ci left: 9.475512e-03	ci right 1.110571e-02	k: 616	n:60000
Cons ci ratio: 1.248411e-01	ci left: 1.515651e-02	ci right 1.719068e-02	k: 969	n:60000
KS ci ratio: 1.740486e-01	ci left: 7.653365e-03	ci right 9.128114e-03	k: 502	n:60000
STIM1   60000 perm   16 sec   (3797 perm/sec)   p_kst 8.366667e-03   p_cons 1.615000e-02   p_joint 1.026667e-02

Joint ci ratio: 1.651338e-01	ci left: 7.325982e-03	ci right 8.658144e-03	k: 558	n:70000
Cons ci ratio: 1.146402e-01	ci left: 1.548595e-02	ci right 1.738301e-02	k: 1149	n:70000
KS ci ratio: 1.611148e-01	ci left: 7.709774e-03	ci right 9.074305e-03	k: 586	n:70000
STIM1   70000 perm   19 sec   (3726 perm/sec)   p_kst 8.371429e-03   p_cons 1.641429e-02   p_joint 7.971429e-03

Joint ci ratio: 1.760020e-01	ci left: 5.619969e-03	ci right 6.716308e-03	k: 492	n:80000
Cons ci ratio: 1.073312e-01	ci left: 1.551905e-02	ci right 1.729128e-02	k: 1311	n:80000
KS ci ratio: 1.460453e-01	ci left: 8.272841e-03	ci right 9.588143e-03	k: 713	n:80000
STIM1   80000 perm   22 sec   (3655 perm/sec)   p_kst 8.912500e-03   p_cons 1.638750e-02   p_joint 6.150000e-03

Joint ci ratio: 1.753489e-01	ci left: 5.037883e-03	ci right 6.016625e-03	k: 496	n:90000
Cons ci ratio: 1.002645e-01	ci left: 1.586201e-02	ci right 1.754712e-02	k: 1502	n:90000
KS ci ratio: 1.380619e-01	ci left: 8.264528e-03	ci right 9.500772e-03	k: 798	n:90000
STIM1   90000 perm   25 sec   (3590 perm/sec)   p_kst 8.866667e-03   p_cons 1.668889e-02   p_joint 5.511111e-03

Joint ci ratio: 1.676100e-01	ci left: 4.983917e-03	ci right 5.905126e-03	k: 543	n:100000
Cons ci ratio: 9.543948e-02	ci left: 1.579762e-02	ci right 1.739060e-02	k: 1658	n:100000
KS ci ratio: 1.297136e-01	ci left: 8.462650e-03	ci right 9.646090e-03	k: 904	n:100000
STIM1   100000 perm   28 sec   (3529 perm/sec)   p_kst 9.040000e-03   p_cons 1.658000e-02   p_joint 5.430000e-03

Joint ci ratio: 1.623387e-01	ci left: 4.844567e-03	ci right 5.709106e-03	k: 579	n:110000
Cons ci ratio: 9.122448e-02	ci left: 1.575542e-02	ci right 1.727023e-02	k: 1815	n:110000
KS ci ratio: 1.243406e-01	ci left: 8.397467e-03	ci right 9.519562e-03	k: 984	n:110000
STIM1   110000 perm   32 sec   (3475 perm/sec)   p_kst 8.945455e-03   p_cons 1.650000e-02   p_joint 5.263636e-03

Joint ci ratio: 1.575347e-01	ci left: 4.728824e-03	ci right 5.545372e-03	k: 615	n:120000
Cons ci ratio: 8.734286e-02	ci left: 1.578678e-02	ci right 1.723672e-02	k: 1980	n:120000
KS ci ratio: 1.197545e-01	ci left: 8.319737e-03	ci right 9.387535e-03	k: 1061	n:120000
STIM1   120000 perm   35 sec   (3422 perm/sec)   p_kst 8.841667e-03   p_cons 1.650000e-02   p_joint 5.125000e-03

Joint ci ratio: 1.684953e-01	ci left: 3.796739e-03	ci right 4.502584e-03	k: 538	n:130000
Cons ci ratio: 8.373963e-02	ci left: 1.588228e-02	ci right 1.727787e-02	k: 2154	n:130000
KS ci ratio: 1.145801e-01	ci left: 8.411538e-03	ci right 9.441315e-03	k: 1159	n:130000
STIM1   130000 perm   39 sec   (3370 perm/sec)   p_kst 8.915385e-03   p_cons 1.656923e-02   p_joint 4.138462e-03

Joint ci ratio: 1.751697e-01	ci left: 3.252031e-03	ci right 3.883091e-03	k: 498	n:140000
Cons ci ratio: 8.095588e-02	ci left: 1.580417e-02	ci right 1.714454e-02	k: 2305	n:140000
KS ci ratio: 1.110975e-01	ci left: 8.324347e-03	ci right 9.310444e-03	k: 1233	n:140000
STIM1   140000 perm   42 sec   (3318 perm/sec)   p_kst 8.807143e-03   p_cons 1.646429e-02   p_joint 3.557143e-03

Joint ci ratio: 1.790101e-01	ci left: 2.901386e-03	ci right 3.478082e-03	k: 477	n:150000
Cons ci ratio: 7.819015e-02	ci left: 1.583521e-02	ci right 1.713024e-02	k: 2471	n:150000
KS ci ratio: 1.076655e-01	ci left: 8.288125e-03	ci right 9.237676e-03	k: 1313	n:150000
STIM1   150000 perm   46 sec   (3271 perm/sec)   p_kst 8.753333e-03   p_cons 1.647333e-02   p_joint 3.180000e-03

Joint ci ratio: 1.752089e-01	ci left: 2.845474e-03	ci right 3.397774e-03	k: 498	n:160000
Cons ci ratio: 7.563151e-02	ci left: 1.588759e-02	ci right 1.714252e-02	k: 2641	n:160000
KS ci ratio: 1.046846e-01	ci left: 8.232491e-03	ci right 9.147946e-03	k: 1389	n:160000
STIM1   160000 perm   50 sec   (3224 perm/sec)   p_kst 8.681250e-03   p_cons 1.650625e-02   p_joint 3.112500e-03

Joint ci ratio: 1.427261e-01	ci left: 4.102257e-03	ci right 4.738355e-03	k: 750	n:170000
Cons ci ratio: 7.326893e-02	ci left: 1.595175e-02	ci right 1.717070e-02	k: 2814	n:170000
KS ci ratio: 1.023617e-01	ci left: 8.114924e-03	ci right 8.996077e-03	k: 1453	n:170000
STIM1   170000 perm   53 sec   (3180 perm/sec)   p_kst 8.547059e-03   p_cons 1.655294e-02   p_joint 4.411765e-03

Joint ci ratio: 1.433198e-01	ci left: 3.842176e-03	ci right 4.440634e-03	k: 744	n:180000
Cons ci ratio: 7.138244e-02	ci left: 1.588924e-02	ci right 1.707086e-02	k: 2965	n:180000
KS ci ratio: 9.956021e-02	ci left: 8.113562e-03	ci right 8.969046e-03	k: 1536	n:180000
STIM1   180000 perm   57 sec   (3135 perm/sec)   p_kst 8.533333e-03   p_cons 1.647222e-02   p_joint 4.133333e-03

Joint ci ratio: 1.417212e-01	ci left: 3.726224e-03	ci right 4.299599e-03	k: 761	n:190000
Cons ci ratio: 6.957782e-02	ci left: 1.585953e-02	ci right 1.700792e-02	k: 3121	n:190000
KS ci ratio: 9.703727e-02	ci left: 8.102366e-03	ci right 8.933787e-03	k: 1617	n:190000
STIM1   190000 perm   61 sec   (3090 perm/sec)   p_kst 8.510526e-03   p_cons 1.642632e-02   p_joint 4.005263e-03

Joint ci ratio: 1.281731e-01	ci left: 4.356540e-03	ci right 4.957956e-03	k: 930	n:200000
Cons ci ratio: 6.764171e-02	ci left: 1.595606e-02	ci right 1.707802e-02	k: 3302	n:200000
KS ci ratio: 9.472502e-02	ci left: 8.087653e-03	ci right 8.896690e-03	k: 1697	n:200000
STIM1   200000 perm   66 sec   (3047 perm/sec)   p_kst 8.485000e-03   p_cons 1.651000e-02   p_joint 4.650000e-03

Joint ci ratio: 1.265592e-01	ci left: 4.259716e-03	ci right 4.839805e-03	k: 954	n:210000
Cons ci ratio: 6.603238e-02	ci left: 1.595946e-02	ci right 1.705394e-02	k: 3465	n:210000
KS ci ratio: 9.223109e-02	ci left: 8.135040e-03	ci right 8.926235e-03	k: 1790	n:210000
STIM1   210000 perm   70 sec   (3006 perm/sec)   p_kst 8.523810e-03   p_cons 1.650000e-02   p_joint 4.542857e-03

Joint ci ratio: 1.278561e-01	ci left: 3.982441e-03	ci right 4.530747e-03	k: 935	n:220000
Cons ci ratio: 6.445148e-02	ci left: 1.600311e-02	ci right 1.707332e-02	k: 3637	n:220000
KS ci ratio: 8.982817e-02	ci left: 8.196148e-03	ci right 8.971428e-03	k: 1887	n:220000
STIM1   220000 perm   74 sec   (2966 perm/sec)   p_kst 8.577273e-03   p_cons 1.653182e-02   p_joint 4.250000e-03

Joint ci ratio: 1.252094e-01	ci left: 3.977699e-03	ci right 4.513174e-03	k: 975	n:230000
Cons ci ratio: 6.298736e-02	ci left: 1.603896e-02	ci right 1.708632e-02	k: 3808	n:230000
KS ci ratio: 8.800714e-02	ci left: 8.175630e-03	ci right 8.932485e-03	k: 1966	n:230000
STIM1   230000 perm   79 sec   (2927 perm/sec)   p_kst 8.547826e-03   p_cons 1.655652e-02   p_joint 4.239130e-03

Joint ci ratio: 1.358294e-01	ci left: 3.223371e-03	ci right 3.697079e-03	k: 829	n:240000
Cons ci ratio: 6.157151e-02	ci left: 1.609670e-02	ci right 1.712336e-02	k: 3985	n:240000
KS ci ratio: 8.595421e-02	ci left: 8.222211e-03	ci right 8.964730e-03	k: 2061	n:240000
STIM1   240000 perm   83 sec   (2888 perm/sec)   p_kst 8.587500e-03   p_cons 1.660417e-02   p_joint 3.454167e-03

Joint ci ratio: 1.328989e-01	ci left: 3.237462e-03	ci right 3.702166e-03	k: 866	n:250000
Cons ci ratio: 6.023967e-02	ci left: 1.615400e-02	ci right 1.716125e-02	k: 4163	n:250000
KS ci ratio: 8.423572e-02	ci left: 8.226087e-03	ci right 8.953374e-03	k: 2146	n:250000
STIM1   250000 perm   88 sec   (2852 perm/sec)   p_kst 8.584000e-03   p_cons 1.665200e-02   p_joint 3.464000e-03

Joint ci ratio: 1.308052e-01	ci left: 3.217082e-03	ci right 3.671021e-03	k: 894	n:260000
Cons ci ratio: 5.897686e-02	ci left: 1.621470e-02	ci right 1.720381e-02	k: 4343	n:260000
KS ci ratio: 8.220866e-02	ci left: 8.312688e-03	ci right 9.029098e-03	k: 2253	n:260000
STIM1   260000 perm   92 sec   (2817 perm/sec)   p_kst 8.665385e-03   p_cons 1.670385e-02   p_joint 3.438462e-03

Joint ci ratio: 1.297989e-01	ci left: 3.148085e-03	ci right 3.588607e-03	k: 908	n:270000
Cons ci ratio: 5.793370e-02	ci left: 1.619078e-02	ci right 1.716038e-02	k: 4501	n:270000
KS ci ratio: 8.077105e-02	ci left: 8.298695e-03	ci right 9.000803e-03	k: 2334	n:270000
STIM1   270000 perm   97 sec   (2784 perm/sec)   p_kst 8.644444e-03   p_cons 1.667037e-02   p_joint 3.362963e-03

Joint ci ratio: 1.416268e-01	ci left: 2.535287e-03	ci right 2.925119e-03	k: 763	n:280000
Cons ci ratio: 5.683866e-02	ci left: 1.622857e-02	ci right 1.718147e-02	k: 4676	n:280000
KS ci ratio: 7.945609e-02	ci left: 8.275299e-03	ci right 8.963501e-03	k: 2412	n:280000
STIM1   280000 perm   102 sec   (2752 perm/sec)   p_kst 8.614286e-03   p_cons 1.670000e-02   p_joint 2.725000e-03

Joint ci ratio: 1.469345e-01	ci left: 2.268353e-03	ci right 2.631359e-03	k: 709	n:290000
Cons ci ratio: 5.587964e-02	ci left: 1.621971e-02	ci right 1.715550e-02	k: 4838	n:290000
KS ci ratio: 7.802973e-02	ci left: 8.290799e-03	ci right 8.967351e-03	k: 2501	n:290000
STIM1   290000 perm   107 sec   (2718 perm/sec)   p_kst 8.624138e-03   p_cons 1.668276e-02   p_joint 2.444828e-03

Joint ci ratio: 1.454089e-01	ci left: 2.240910e-03	ci right 2.595478e-03	k: 724	n:300000
Cons ci ratio: 5.482837e-02	ci left: 1.629378e-02	ci right 1.721559e-02	k: 5025	n:300000
KS ci ratio: 7.664769e-02	ci left: 8.311910e-03	ci right 8.977634e-03	k: 2592	n:300000
STIM1   300000 perm   112 sec   (2688 perm/sec)   p_kst 8.640000e-03   p_cons 1.675000e-02   p_joint 2.413333e-03

Joint ci ratio: 1.432522e-01	ci left: 2.237028e-03	ci right 2.585282e-03	k: 746	n:310000
Cons ci ratio: 5.390795e-02	ci left: 1.631866e-02	ci right 1.722589e-02	k: 5198	n:310000
KS ci ratio: 7.530828e-02	ci left: 8.338088e-03	ci right 8.993728e-03	k: 2685	n:310000
STIM1   310000 perm   117 sec   (2656 perm/sec)   p_kst 8.661290e-03   p_cons 1.676774e-02   p_joint 2.406452e-03

Joint ci ratio: 1.419306e-01	ci left: 2.209307e-03	ci right 2.549804e-03	k: 760	n:320000
Cons ci ratio: 5.310784e-02	ci left: 1.629584e-02	ci right 1.718795e-02	k: 5356	n:320000
KS ci ratio: 7.432050e-02	ci left: 8.298307e-03	ci right 8.941890e-03	k: 2757	n:320000
STIM1   320000 perm   122 sec   (2625 perm/sec)   p_kst 8.615625e-03   p_cons 1.673750e-02   p_joint 2.375000e-03

Joint ci ratio: 1.424054e-01	ci left: 2.127740e-03	ci right 2.456855e-03	k: 755	n:330000
Cons ci ratio: 5.231821e-02	ci left: 1.628945e-02	ci right 1.716755e-02	k: 5519	n:330000
KS ci ratio: 7.312340e-02	ci left: 8.317519e-03	ci right 8.951761e-03	k: 2848	n:330000
STIM1   330000 perm   127 sec   (2595 perm/sec)   p_kst 8.630303e-03   p_cons 1.672424e-02   p_joint 2.287879e-03

Joint ci ratio: 1.170440e-01	ci left: 3.095723e-03	ci right 3.483408e-03	k: 1117	n:340000
Cons ci ratio: 5.156279e-02	ci left: 1.628353e-02	ci right 1.714826e-02	k: 5682	n:340000
KS ci ratio: 7.206893e-02	ci left: 8.315460e-03	ci right 8.940017e-03	k: 2932	n:340000
STIM1   340000 perm   133 sec   (2566 perm/sec)   p_kst 8.623529e-03   p_cons 1.671176e-02   p_joint 3.285294e-03

Joint ci ratio: 1.194307e-01	ci left: 2.885258e-03	ci right 3.254474e-03	k: 1073	n:350000
Cons ci ratio: 5.078619e-02	ci left: 1.631190e-02	ci right 1.716470e-02	k: 5857	n:350000
KS ci ratio: 7.096396e-02	ci left: 8.336035e-03	ci right 8.952142e-03	k: 3024	n:350000
STIM1   350000 perm   138 sec   (2536 perm/sec)   p_kst 8.640000e-03   p_cons 1.673429e-02   p_joint 3.065714e-03

Joint ci ratio: 1.196595e-01	ci left: 2.794325e-03	ci right 3.152638e-03	k: 1069	n:360000
Cons ci ratio: 5.011127e-02	ci left: 1.629488e-02	ci right 1.713515e-02	k: 6016	n:360000
KS ci ratio: 7.016992e-02	ci left: 8.292756e-03	ci right 8.898527e-03	k: 3093	n:360000
STIM1   360000 perm   144 sec   (2508 perm/sec)   p_kst 8.591667e-03   p_cons 1.671111e-02   p_joint 2.969444e-03

Joint ci ratio: 1.178554e-01	ci left: 2.805344e-03	ci right 3.159268e-03	k: 1102	n:370000
Cons ci ratio: 4.947887e-02	ci left: 1.626817e-02	ci right 1.709618e-02	k: 6171	n:370000
KS ci ratio: 6.918167e-02	ci left: 8.304979e-03	ci right 8.902755e-03	k: 3182	n:370000
STIM1   370000 perm   149 sec   (2481 perm/sec)   p_kst 8.600000e-03   p_cons 1.667838e-02   p_joint 2.978378e-03

Joint ci ratio: 1.190568e-01	ci left: 2.675329e-03	ci right 3.016533e-03	k: 1080	n:380000
Cons ci ratio: 4.877582e-02	ci left: 1.630534e-02	ci right 1.712311e-02	k: 6350	n:380000
KS ci ratio: 6.812909e-02	ci left: 8.342486e-03	ci right 8.933465e-03	k: 3281	n:380000
STIM1   380000 perm   155 sec   (2455 perm/sec)   p_kst 8.634211e-03   p_cons 1.671053e-02   p_joint 2.842105e-03

Joint ci ratio: 1.172794e-01	ci left: 2.688846e-03	ci right 3.026300e-03	k: 1113	n:390000
Cons ci ratio: 4.827892e-02	ci left: 1.622159e-02	ci right 1.702664e-02	k: 6482	n:390000
KS ci ratio: 6.719334e-02	ci left: 8.360484e-03	ci right 8.944287e-03	k: 3373	n:390000
STIM1   390000 perm   161 sec   (2429 perm/sec)   p_kst 8.648718e-03   p_cons 1.662051e-02   p_joint 2.853846e-03

Joint ci ratio: 1.159857e-01	ci left: 2.682301e-03	ci right 3.014966e-03	k: 1138	n:400000
Cons ci ratio: 4.766516e-02	ci left: 1.623101e-02	ci right 1.702601e-02	k: 6650	n:400000
KS ci ratio: 6.648889e-02	ci left: 8.328459e-03	ci right 8.903693e-03	k: 3445	n:400000
STIM1   400000 perm   166 sec   (2403 perm/sec)   p_kst 8.612500e-03   p_cons 1.662500e-02   p_joint 2.845000e-03

Joint ci ratio: 1.146845e-01	ci left: 2.678464e-03	ci right 3.006674e-03	k: 1164	n:410000
Cons ci ratio: 4.710586e-02	ci left: 1.621834e-02	ci right 1.700314e-02	k: 6809	n:410000
KS ci ratio: 6.573079e-02	ci left: 8.317221e-03	ci right 8.884879e-03	k: 3525	n:410000
STIM1   410000 perm   172 sec   (2377 perm/sec)   p_kst 8.597561e-03   p_cons 1.660732e-02   p_joint 2.839024e-03

Joint ci ratio: 1.162497e-01	ci left: 2.543003e-03	ci right 2.859158e-03	k: 1133	n:420000
Cons ci ratio: 4.651492e-02	ci left: 1.624163e-02	ci right 1.701744e-02	k: 6983	n:420000
KS ci ratio: 6.490733e-02	ci left: 8.329979e-03	ci right 8.891118e-03	k: 3615	n:420000
STIM1   420000 perm   179 sec   (2352 perm/sec)   p_kst 8.607143e-03   p_cons 1.662619e-02   p_joint 2.697619e-03

Joint ci ratio: 1.038540e-01	ci left: 3.130775e-03	ci right 3.475972e-03	k: 1419	n:430000
Cons ci ratio: 4.592284e-02	ci left: 1.627999e-02	ci right 1.704747e-02	k: 7164	n:430000
KS ci ratio: 6.422778e-02	ci left: 8.312435e-03	ci right 8.866311e-03	k: 3692	n:430000
STIM1   430000 perm   185 sec   (2329 perm/sec)   p_kst 8.586047e-03   p_cons 1.666047e-02   p_joint 3.300000e-03

Joint ci ratio: 1.033480e-01	ci left: 3.090611e-03	ci right 3.429619e-03	k: 1433	n:440000
Cons ci ratio: 4.538108e-02	ci left: 1.629644e-02	ci right 1.705540e-02	k: 7336	n:440000
KS ci ratio: 6.348427e-02	ci left: 8.318086e-03	ci right 8.865687e-03	k: 3779	n:440000
STIM1   440000 perm   191 sec   (2305 perm/sec)   p_kst 8.588636e-03   p_cons 1.667273e-02   p_joint 3.256818e-03

Joint ci ratio: 1.033518e-01	ci left: 3.021926e-03	ci right 3.353411e-03	k: 1433	n:450000
Cons ci ratio: 4.488847e-02	ci left: 1.629024e-02	ci right 1.704045e-02	k: 7498	n:450000
KS ci ratio: 6.278237e-02	ci left: 8.319147e-03	ci right 8.860542e-03	k: 3864	n:450000
STIM1   450000 perm   197 sec   (2282 perm/sec)   p_kst 8.586667e-03   p_cons 1.666222e-02   p_joint 3.184444e-03

Joint ci ratio: 1.042711e-01	ci left: 2.903285e-03	ci right 3.224763e-03	k: 1408	n:460000
Cons ci ratio: 4.439682e-02	ci left: 1.629509e-02	ci right 1.703710e-02	k: 7665	n:460000
KS ci ratio: 6.208740e-02	ci left: 8.324474e-03	ci right 8.860004e-03	k: 3951	n:460000
STIM1   460000 perm   204 sec   (2260 perm/sec)   p_kst 8.589130e-03   p_cons 1.666304e-02   p_joint 3.060870e-03

Joint ci ratio: 1.038686e-01	ci left: 2.864306e-03	ci right 3.180168e-03	k: 1419	n:470000
Cons ci ratio: 4.395810e-02	ci left: 1.627242e-02	ci right 1.700589e-02	k: 7819	n:470000
KS ci ratio: 6.140734e-02	ci left: 8.331702e-03	ci right 8.861617e-03	k: 4039	n:470000
STIM1   470000 perm   210 sec   (2238 perm/sec)   p_kst 8.593617e-03   p_cons 1.663617e-02   p_joint 3.019149e-03

Joint ci ratio: 1.026820e-01	ci left: 2.871607e-03	ci right 3.184439e-03	k: 1452	n:480000
Cons ci ratio: 4.350439e-02	ci left: 1.627135e-02	ci right 1.699701e-02	k: 7983	n:480000
KS ci ratio: 6.080117e-02	ci left: 8.324295e-03	ci right 8.848329e-03	k: 4120	n:480000
STIM1   480000 perm   217 sec   (2217 perm/sec)   p_kst 8.583333e-03   p_cons 1.663125e-02   p_joint 3.025000e-03

Joint ci ratio: 1.037652e-01	ci left: 2.753350e-03	ci right 3.056656e-03	k: 1422	n:490000
Cons ci ratio: 4.306445e-02	ci left: 1.627035e-02	ci right 1.698845e-02	k: 8147	n:490000
KS ci ratio: 6.017651e-02	ci left: 8.327268e-03	ci right 8.845915e-03	k: 4206	n:490000
STIM1   490000 perm   223 sec   (2195 perm/sec)   p_kst 8.583673e-03   p_cons 1.662653e-02   p_joint 2.902041e-03

Joint ci ratio: 1.027592e-01	ci left: 2.752837e-03	ci right 3.052969e-03	k: 1450	n:500000
Cons ci ratio: 4.257513e-02	ci left: 1.631692e-02	ci right 1.702869e-02	k: 8335	n:500000
KS ci ratio: 5.961274e-02	ci left: 8.318325e-03	ci right 8.831394e-03	k: 4286	n:500000
STIM1   500000 perm   230 sec   (2174 perm/sec)   p_kst 8.572000e-03   p_cons 1.667000e-02   p_joint 2.900000e-03

Joint ci ratio: 1.015756e-01	ci left: 2.763824e-03	ci right 3.061476e-03	k: 1484	n:510000
Cons ci ratio: 4.210965e-02	ci left: 1.635589e-02	ci right 1.706138e-02	k: 8520	n:510000
KS ci ratio: 5.900322e-02	ci left: 8.327143e-03	ci right 8.835326e-03	k: 4375	n:510000
STIM1   510000 perm   237 sec   (2154 perm/sec)   p_kst 8.578431e-03   p_cons 1.670588e-02   p_joint 2.909804e-03

Joint ci ratio: 1.006982e-01	ci left: 2.759408e-03	ci right 3.053866e-03	k: 1510	n:520000
Cons ci ratio: 4.172741e-02	ci left: 1.634011e-02	ci right 1.703836e-02	k: 8677	n:520000
KS ci ratio: 5.856437e-02	ci left: 8.292059e-03	ci right 8.794209e-03	k: 4441	n:520000
STIM1   520000 perm   244 sec   (2134 perm/sec)   p_kst 8.540385e-03   p_cons 1.668654e-02   p_joint 2.903846e-03

Joint ci ratio: 9.997366e-02	ci left: 2.747811e-03	ci right 3.038797e-03	k: 1532	n:530000
Cons ci ratio: 4.132210e-02	ci left: 1.635110e-02	ci right 1.704287e-02	k: 8848	n:530000
KS ci ratio: 5.810916e-02	ci left: 8.265751e-03	ci right 8.762286e-03	k: 4511	n:530000
STIM1   530000 perm   251 sec   (2114 perm/sec)   p_kst 8.511321e-03   p_cons 1.669434e-02   p_joint 2.890566e-03

Outputting figure to mutsig2_images.part000000000168/STIM1.5_2106_530000_0.0085113_0.016694_0.0028906.png
                gene_name: STIM1
               theta_stop: 0.100 
                    nperm: 530000 
                     p_ks: 0.0085 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0030 

Current progress: 25 percent done.
STIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
Cons ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
KS ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
STIM2   10000 perm   2 sec   (5087 perm/sec)   p_kst 3.910000e-02   p_cons 7.180000e-02   p_joint 4.930000e-02

Joint ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
Cons ci ratio: 9.999791e-02	ci left: 6.777123e-02	ci right 7.495399e-02	k: 1426	n:20000
KS ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
STIM2   20000 perm   4 sec   (4560 perm/sec)   p_kst 3.645000e-02   p_cons 7.130000e-02   p_joint 3.920000e-02

Joint ci ratio: 1.480533e-01	ci left: 2.114060e-02	ci right 2.455267e-02	k: 684	n:30000
Cons ci ratio: 8.100847e-02	ci left: 6.945964e-02	ci right 7.535682e-02	k: 2171	n:30000
KS ci ratio: 1.162231e-01	ci left: 3.440625e-02	ci right 3.868411e-02	k: 1095	n:30000
STIM2   30000 perm   7 sec   (4375 perm/sec)   p_kst 3.650000e-02   p_cons 7.236667e-02   p_joint 2.280000e-02

Joint ci ratio: 1.010600e-01	ci left: 3.441514e-02	ci right 3.810258e-02	k: 1449	n:40000
Cons ci ratio: 6.988287e-02	ci left: 7.037089e-02	ci right 7.549132e-02	k: 2916	n:40000
KS ci ratio: 9.878489e-02	ci left: 3.600098e-02	ci right 3.976649e-02	k: 1514	n:40000
STIM2   40000 perm   9 sec   (4238 perm/sec)   p_kst 3.785000e-02   p_cons 7.290000e-02   p_joint 3.622500e-02

Joint ci ratio: 8.966210e-02	ci left: 3.516670e-02	ci right 3.848735e-02	k: 1840	n:50000
Cons ci ratio: 5.816283e-02	ci left: 8.085263e-02	ci right 8.571588e-02	k: 4163	n:50000
KS ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
STIM2   50000 perm   12 sec   (4135 perm/sec)   p_kst 3.712000e-02   p_cons 8.326000e-02   p_joint 3.680000e-02

Outputting figure to mutsig2_images.part000000000168/STIM2.5_2358_50000_0.03712_0.08326_0.0368.png
                gene_name: STIM2
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 27 percent done.
STK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
Cons ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
KS ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
STK10   10000 perm   2 sec   (4803 perm/sec)   p_kst 5.822000e-01   p_cons 2.294000e-01   p_joint 5.364000e-01

Outputting figure to mutsig2_images.part000000000168/STK10.5_2983_10000_0.5822_0.2294_0.5364.png
                gene_name: STK10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 28 percent done.
STK17B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
Cons ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
KS ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
STK17B   10000 perm   2 sec   (5752 perm/sec)   p_kst 7.024000e-01   p_cons 3.320000e-01   p_joint 7.237000e-01

Outputting figure to mutsig2_images.part000000000168/STK17B.5_1147_10000_0.7024_0.332_0.7237.png
                gene_name: STK17B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 30 percent done.
STK32B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
Cons ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
KS ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
STK32B   10000 perm   2 sec   (5301 perm/sec)   p_kst 3.470000e-02   p_cons 1.512000e-01   p_joint 6.790000e-02

Joint ci ratio: 1.493429e-01	ci left: 3.080828e-02	ci right 3.582860e-02	k: 665	n:20000
Cons ci ratio: 6.974495e-02	ci left: 1.316222e-01	ci right 1.411837e-01	k: 2727	n:20000
KS ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
STK32B   20000 perm   4 sec   (4704 perm/sec)   p_kst 3.295000e-02   p_cons 1.363500e-01   p_joint 3.325000e-02

Joint ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
Cons ci ratio: 5.697102e-02	ci left: 1.324032e-01	ci right 1.402007e-01	k: 4088	n:30000
KS ci ratio: 1.223194e-01	ci left: 3.107192e-02	ci right 3.515248e-02	k: 992	n:30000
STK32B   30000 perm   7 sec   (4498 perm/sec)   p_kst 3.306667e-02   p_cons 1.362667e-01   p_joint 2.483333e-02

Joint ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
Cons ci ratio: 4.897509e-02	ci left: 1.346586e-01	ci right 1.414440e-01	k: 5521	n:40000
KS ci ratio: 1.047114e-01	ci left: 3.207481e-02	ci right 3.564328e-02	k: 1353	n:40000
STK32B   40000 perm   9 sec   (4355 perm/sec)   p_kst 3.382500e-02   p_cons 1.380250e-01   p_joint 3.052500e-02

Joint ci ratio: 1.077237e-01	ci left: 2.440849e-02	ci right 2.720694e-02	k: 1289	n:50000
Cons ci ratio: 4.384342e-02	ci left: 1.348096e-01	ci right 1.408725e-01	k: 6891	n:50000
KS ci ratio: 9.254495e-02	ci left: 3.303465e-02	ci right 3.625967e-02	k: 1731	n:50000
STK32B   50000 perm   12 sec   (4243 perm/sec)   p_kst 3.462000e-02   p_cons 1.378200e-01   p_joint 2.578000e-02

Joint ci ratio: 7.697388e-02	ci left: 3.983623e-02	ci right 4.304165e-02	k: 2485	n:60000
Cons ci ratio: 4.005264e-02	ci left: 1.349025e-01	ci right 1.404326e-01	k: 8259	n:60000
KS ci ratio: 8.378271e-02	ci left: 3.372329e-02	ci right 3.668855e-02	k: 2111	n:60000
STK32B   60000 perm   14 sec   (4139 perm/sec)   p_kst 3.518333e-02   p_cons 1.376500e-01   p_joint 4.141667e-02

Outputting figure to mutsig2_images.part000000000168/STK32B.5_1293_60000_0.035183_0.13765_0.041417.png
                gene_name: STK32B
               theta_stop: 0.084 
                    nperm: 60000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 32 percent done.
STK32C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
STK32C   10000 perm   2 sec   (5536 perm/sec)   p_kst 1.193000e-01   p_cons 3.330000e-02   p_joint 1.066000e-01

Joint ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
Cons ci ratio: 1.487662e-01	ci left: 3.104924e-02	ci right 3.608756e-02	k: 670	n:20000
KS ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
STK32C   20000 perm   4 sec   (4898 perm/sec)   p_kst 1.175500e-01   p_cons 3.350000e-02   p_joint 7.650000e-02

Joint ci ratio: 8.762768e-02	ci left: 5.978667e-02	ci right 6.529843e-02	k: 1875	n:30000
Cons ci ratio: 1.250139e-01	ci left: 2.974625e-02	ci right 3.374511e-02	k: 951	n:30000
KS ci ratio: 6.310390e-02	ci left: 1.103588e-01	ci right 1.175828e-01	k: 3418	n:30000
STK32C   30000 perm   6 sec   (4644 perm/sec)   p_kst 1.139333e-01   p_cons 3.170000e-02   p_joint 6.250000e-02

Joint ci ratio: 7.948044e-02	ci left: 5.504208e-02	ci right 5.962245e-02	k: 2292	n:40000
Cons ci ratio: 1.073662e-01	ci left: 3.051591e-02	ci right 3.400243e-02	k: 1289	n:40000
KS ci ratio: 5.447234e-02	ci left: 1.114939e-01	ci right 1.177621e-01	k: 4584	n:40000
STK32C   40000 perm   9 sec   (4491 perm/sec)   p_kst 1.146000e-01   p_cons 3.222500e-02   p_joint 5.730000e-02

Joint ci ratio: 6.732314e-02	ci left: 6.135821e-02	ci right 6.565264e-02	k: 3174	n:50000
Cons ci ratio: 9.601613e-02	ci left: 3.070894e-02	ci right 3.382567e-02	k: 1612	n:50000
KS ci ratio: 4.891584e-02	ci left: 1.110289e-01	ci right 1.166160e-01	k: 5690	n:50000
STK32C   50000 perm   11 sec   (4351 perm/sec)   p_kst 1.138000e-01   p_cons 3.224000e-02   p_joint 6.348000e-02

Outputting figure to mutsig2_images.part000000000168/STK32C.5_1509_50000_0.1138_0.03224_0.06348.png
                gene_name: STK32C
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 33 percent done.
STK36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
STK36   10000 perm   2 sec   (4592 perm/sec)   p_kst 4.098000e-01   p_cons 1.941000e-01   p_joint 2.337000e-01

Outputting figure to mutsig2_images.part000000000168/STK36.5_4052_10000_0.4098_0.1941_0.2337.png
                gene_name: STK36
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 35 percent done.
STOML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
KS ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
STOML3   10000 perm   2 sec   (5438 perm/sec)   p_kst 8.672000e-01   p_cons 6.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STOML3.5_933_10000_0.8672_0.673_1.png
                gene_name: STOML3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
STS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
STS   10000 perm   2 sec   (5588 perm/sec)   p_kst 1.467000e-01   p_cons 6.588000e-01   p_joint 3.628000e-01

Outputting figure to mutsig2_images.part000000000168/STS.5_1792_10000_0.1467_0.6588_0.3628.png
                gene_name: STS
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
STARD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
STARD7   10000 perm   2 sec   (5779 perm/sec)   p_kst 1.453000e-01   p_cons 3.700000e-03   p_joint 3.940000e-02

Joint ci ratio: 1.736334e-01	ci left: 2.268901e-02	ci right 2.705062e-02	k: 496	n:20000
Cons ci ratio: 4.745492e-01	ci left: 2.597119e-03	ci right 4.252457e-03	k: 67	n:20000
KS ci ratio: 6.756650e-02	ci left: 1.391612e-01	ci right 1.489425e-01	k: 2880	n:20000
STARD7   20000 perm   4 sec   (5109 perm/sec)   p_kst 1.440000e-01   p_cons 3.350000e-03   p_joint 2.480000e-02

Joint ci ratio: 1.220021e-01	ci left: 3.123366e-02	ci right 3.532405e-02	k: 997	n:30000
Cons ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
KS ci ratio: 5.453207e-02	ci left: 1.429118e-01	ci right 1.509567e-01	k: 4407	n:30000
STARD7   30000 perm   6 sec   (4797 perm/sec)   p_kst 1.469000e-01   p_cons 3.600000e-03   p_joint 3.323333e-02

Joint ci ratio: 1.031831e-01	ci left: 3.302530e-02	ci right 3.664264e-02	k: 1392	n:40000
Cons ci ratio: 3.112381e-01	ci left: 3.335997e-03	ci right 4.587710e-03	k: 157	n:40000
KS ci ratio: 4.726086e-02	ci left: 1.432707e-01	ci right 1.502306e-01	k: 5869	n:40000
STARD7   40000 perm   9 sec   (4641 perm/sec)   p_kst 1.467250e-01   p_cons 3.925000e-03   p_joint 3.480000e-02

Joint ci ratio: 8.827739e-02	ci left: 3.626269e-02	ci right 3.963123e-02	k: 1896	n:50000
Cons ci ratio: 2.830962e-01	ci left: 3.279683e-03	ci right 4.379160e-03	k: 190	n:50000
KS ci ratio: 4.213192e-02	ci left: 1.444618e-01	ci right 1.506992e-01	k: 7378	n:50000
STARD7   50000 perm   11 sec   (4506 perm/sec)   p_kst 1.475600e-01   p_cons 3.800000e-03   p_joint 3.792000e-02

Joint ci ratio: 7.405381e-02	ci left: 4.296202e-02	ci right 4.628221e-02	k: 2676	n:60000
Cons ci ratio: 2.557561e-01	ci left: 3.401469e-03	ci right 4.414113e-03	k: 233	n:60000
KS ci ratio: 3.849114e-02	ci left: 1.445391e-01	ci right 1.502284e-01	k: 8842	n:60000
STARD7   60000 perm   14 sec   (4378 perm/sec)   p_kst 1.473667e-01   p_cons 3.883333e-03   p_joint 4.460000e-02

Joint ci ratio: 6.033547e-02	ci left: 5.515294e-02	ci right 5.859820e-02	k: 3980	n:70000
Cons ci ratio: 2.445499e-01	ci left: 3.210095e-03	ci right 4.117528e-03	k: 255	n:70000
KS ci ratio: 3.551051e-02	ci left: 1.456322e-01	ci right 1.509113e-01	k: 10378	n:70000
STARD7   70000 perm   16 sec   (4277 perm/sec)   p_kst 1.482571e-01   p_cons 3.642857e-03   p_joint 5.685714e-02

Joint ci ratio: 6.593502e-02	ci left: 4.091565e-02	ci right 4.371767e-02	k: 3384	n:80000
Cons ci ratio: 2.247698e-01	ci left: 3.361879e-03	ci right 4.224721e-03	k: 302	n:80000
KS ci ratio: 3.321988e-02	ci left: 1.457817e-01	ci right 1.507188e-01	k: 11859	n:80000
STARD7   80000 perm   19 sec   (4183 perm/sec)   p_kst 1.482375e-01   p_cons 3.775000e-03   p_joint 4.230000e-02

Joint ci ratio: 7.125515e-02	ci left: 3.137288e-02	ci right 3.370183e-02	k: 2927	n:90000
Cons ci ratio: 2.137723e-01	ci left: 3.324367e-03	ci right 4.130363e-03	k: 334	n:90000
KS ci ratio: 3.136488e-02	ci left: 1.455644e-01	ci right 1.502138e-01	k: 13309	n:90000
STARD7   90000 perm   22 sec   (4097 perm/sec)   p_kst 1.478778e-01   p_cons 3.711111e-03   p_joint 3.252222e-02

Joint ci ratio: 6.289723e-02	ci left: 3.621274e-02	ci right 3.857419e-02	k: 3738	n:100000
Cons ci ratio: 2.023180e-01	ci left: 3.361631e-03	ci right 4.127597e-03	k: 373	n:100000
KS ci ratio: 2.975994e-02	ci left: 1.456453e-01	ci right 1.500551e-01	k: 14784	n:100000
STARD7   100000 perm   25 sec   (4022 perm/sec)   p_kst 1.478400e-01   p_cons 3.730000e-03   p_joint 3.738000e-02

Joint ci ratio: 6.622025e-02	ci left: 2.984943e-02	ci right 3.190267e-02	k: 3395	n:110000
Cons ci ratio: 1.949102e-01	ci left: 3.306547e-03	ci right 4.029102e-03	k: 402	n:110000
KS ci ratio: 2.839805e-02	ci left: 1.455448e-01	ci right 1.497465e-01	k: 16240	n:110000
STARD7   110000 perm   28 sec   (3954 perm/sec)   p_kst 1.476364e-01   p_cons 3.654545e-03   p_joint 3.086364e-02

Joint ci ratio: 5.490298e-02	ci left: 3.963009e-02	ci right 4.187551e-02	k: 4889	n:120000
Cons ci ratio: 1.876079e-01	ci left: 3.284899e-03	ci right 3.972766e-03	k: 434	n:120000
KS ci ratio: 2.709267e-02	ci left: 1.465256e-01	ci right 1.505581e-01	k: 17824	n:120000
STARD7   120000 perm   31 sec   (3885 perm/sec)   p_kst 1.485333e-01   p_cons 3.616667e-03   p_joint 4.074167e-02

Joint ci ratio: 4.917649e-02	ci left: 4.545288e-02	ci right 4.775201e-02	k: 6057	n:130000
Cons ci ratio: 1.804883e-01	ci left: 3.289045e-03	ci right 3.948787e-03	k: 469	n:130000
KS ci ratio: 2.603013e-02	ci left: 1.466016e-01	ci right 1.504756e-01	k: 19309	n:130000
STARD7   130000 perm   34 sec   (3811 perm/sec)   p_kst 1.485308e-01   p_cons 3.607692e-03   p_joint 4.659231e-02

Joint ci ratio: 4.696263e-02	ci left: 4.629273e-02	ci right 4.852607e-02	k: 6636	n:140000
Cons ci ratio: 1.749938e-01	ci left: 3.258862e-03	ci right 3.890545e-03	k: 499	n:140000
KS ci ratio: 2.454054e-02	ci left: 1.522621e-01	ci right 1.560522e-01	k: 21581	n:140000
STARD7   140000 perm   37 sec   (3746 perm/sec)   p_kst 1.541500e-01   p_cons 3.564286e-03   p_joint 4.740000e-02

Joint ci ratio: 4.680485e-02	ci left: 4.362677e-02	ci right 4.572421e-02	k: 6700	n:150000
Cons ci ratio: 1.699723e-01	ci left: 3.232967e-03	ci right 3.839806e-03	k: 529	n:150000
KS ci ratio: 2.370937e-02	ci left: 1.523161e-01	ci right 1.559773e-01	k: 23121	n:150000
STARD7   150000 perm   41 sec   (3681 perm/sec)   p_kst 1.541400e-01   p_cons 3.526667e-03   p_joint 4.466667e-02

Joint ci ratio: 4.767716e-02	ci left: 3.957019e-02	ci right 4.150901e-02	k: 6485	n:160000
Cons ci ratio: 1.623330e-01	ci left: 3.336422e-03	ci right 3.931787e-03	k: 580	n:160000
KS ci ratio: 2.295566e-02	ci left: 1.523838e-01	ci right 1.559287e-01	k: 24664	n:160000
STARD7   160000 perm   44 sec   (3618 perm/sec)   p_kst 1.541500e-01   p_cons 3.625000e-03   p_joint 4.053125e-02

Joint ci ratio: 4.771343e-02	ci left: 3.727633e-02	ci right 3.910417e-02	k: 6491	n:170000
Cons ci ratio: 1.563855e-01	ci left: 3.394322e-03	ci right 3.975747e-03	k: 625	n:170000
KS ci ratio: 2.225348e-02	ci left: 1.526326e-01	ci right 1.560733e-01	k: 26239	n:170000
STARD7   170000 perm   48 sec   (3559 perm/sec)   p_kst 1.543471e-01   p_cons 3.676471e-03   p_joint 3.818235e-02

Joint ci ratio: 4.419747e-02	ci left: 4.094602e-02	ci right 4.280210e-02	k: 7536	n:180000
Cons ci ratio: 1.517296e-01	ci left: 3.414066e-03	ci right 3.979881e-03	k: 664	n:180000
KS ci ratio: 2.162674e-02	ci left: 1.526783e-01	ci right 1.560218e-01	k: 27782	n:180000
STARD7   180000 perm   51 sec   (3505 perm/sec)   p_kst 1.543444e-01   p_cons 3.688889e-03   p_joint 4.186667e-02

Joint ci ratio: 4.591022e-02	ci left: 3.610363e-02	ci right 3.780527e-02	k: 7020	n:190000
Cons ci ratio: 1.462206e-01	ci left: 3.492807e-03	ci right 4.048818e-03	k: 715	n:190000
KS ci ratio: 2.104293e-02	ci left: 1.528094e-01	ci right 1.560643e-01	k: 29342	n:190000
STARD7   190000 perm   55 sec   (3453 perm/sec)   p_kst 1.544316e-01   p_cons 3.763158e-03   p_joint 3.694737e-02

Joint ci ratio: 4.635256e-02	ci left: 3.372416e-02	ci right 3.532937e-02	k: 6904	n:200000
Cons ci ratio: 1.427737e-01	ci left: 3.486839e-03	ci right 4.027701e-03	k: 750	n:200000
KS ci ratio: 2.052519e-02	ci left: 1.526596e-01	ci right 1.558304e-01	k: 30848	n:200000
STARD7   200000 perm   59 sec   (3400 perm/sec)   p_kst 1.542400e-01   p_cons 3.750000e-03   p_joint 3.452000e-02

Joint ci ratio: 4.093877e-02	ci left: 4.097628e-02	ci right 4.269354e-02	k: 8784	n:210000
Cons ci ratio: 1.396487e-01	ci left: 3.476982e-03	ci right 4.003529e-03	k: 784	n:210000
KS ci ratio: 2.003326e-02	ci left: 1.526625e-01	ci right 1.557565e-01	k: 32383	n:210000
STARD7   210000 perm   63 sec   (3351 perm/sec)   p_kst 1.542048e-01   p_cons 3.733333e-03   p_joint 4.182857e-02

Joint ci ratio: 4.064085e-02	ci left: 3.974757e-02	ci right 4.140093e-02	k: 8925	n:220000
Cons ci ratio: 1.369724e-01	ci left: 3.454968e-03	ci right 3.967335e-03	k: 815	n:220000
KS ci ratio: 1.956247e-02	ci left: 1.528336e-01	ci right 1.558574e-01	k: 33955	n:220000
STARD7   220000 perm   67 sec   (3300 perm/sec)   p_kst 1.543409e-01   p_cons 3.704545e-03   p_joint 4.056818e-02

Joint ci ratio: 3.947872e-02	ci left: 4.029229e-02	ci right 4.191930e-02	k: 9453	n:230000
Cons ci ratio: 1.346039e-01	ci left: 3.426552e-03	ci right 3.925215e-03	k: 844	n:230000
KS ci ratio: 1.899800e-02	ci left: 1.547098e-01	ci right 1.576815e-01	k: 35924	n:230000
STARD7   230000 perm   71 sec   (3253 perm/sec)   p_kst 1.561913e-01   p_cons 3.669565e-03   p_joint 4.110000e-02

Joint ci ratio: 3.648650e-02	ci left: 4.504965e-02	ci right 4.672800e-02	k: 11012	n:240000
Cons ci ratio: 1.307863e-01	ci left: 3.485204e-03	ci right 3.976901e-03	k: 894	n:240000
KS ci ratio: 1.858888e-02	ci left: 1.548700e-01	ci right 1.577800e-01	k: 37517	n:240000
STARD7   240000 perm   75 sec   (3209 perm/sec)   p_kst 1.563208e-01   p_cons 3.725000e-03   p_joint 4.588333e-02

Joint ci ratio: 3.417227e-02	ci left: 4.914889e-02	ci right 5.086156e-02	k: 12500	n:250000
Cons ci ratio: 1.281640e-01	ci left: 3.489003e-03	ci right 3.970615e-03	k: 931	n:250000
KS ci ratio: 1.822333e-02	ci left: 1.547550e-01	ci right 1.576050e-01	k: 39044	n:250000
STARD7   250000 perm   79 sec   (3164 perm/sec)   p_kst 1.561760e-01   p_cons 3.724000e-03   p_joint 5.000000e-02

Joint ci ratio: 3.144511e-02	ci left: 5.551247e-02	ci right 5.728974e-02	k: 14663	n:260000
Cons ci ratio: 1.253692e-01	ci left: 3.511229e-03	ci right 3.984555e-03	k: 973	n:260000
KS ci ratio: 1.787618e-02	ci left: 1.546838e-01	ci right 1.574777e-01	k: 40580	n:260000
STARD7   260000 perm   83 sec   (3120 perm/sec)   p_kst 1.560769e-01   p_cons 3.742308e-03   p_joint 5.639615e-02

Joint ci ratio: 3.150148e-02	ci left: 5.338568e-02	ci right 5.509798e-02	k: 14644	n:270000
Cons ci ratio: 1.227495e-01	ci left: 3.531914e-03	ci right 3.997356e-03	k: 1015	n:270000
KS ci ratio: 1.755406e-02	ci left: 1.545298e-01	ci right 1.572701e-01	k: 42092	n:270000
STARD7   270000 perm   88 sec   (3077 perm/sec)   p_kst 1.558963e-01   p_cons 3.759259e-03   p_joint 5.423704e-02

Joint ci ratio: 2.945003e-02	ci left: 5.863366e-02	ci right 6.038975e-02	k: 16662	n:280000
Cons ci ratio: 1.209781e-01	ci left: 3.509648e-03	ci right 3.965004e-03	k: 1045	n:280000
KS ci ratio: 1.722980e-02	ci left: 1.546756e-01	ci right 1.573673e-01	k: 43685	n:280000
STARD7   280000 perm   92 sec   (3033 perm/sec)   p_kst 1.560179e-01   p_cons 3.732143e-03   p_joint 5.950714e-02

Joint ci ratio: 2.959727e-02	ci left: 5.619314e-02	ci right 5.788469e-02	k: 16540	n:290000
Cons ci ratio: 1.188936e-01	ci left: 3.512385e-03	ci right 3.959692e-03	k: 1082	n:290000
KS ci ratio: 1.692463e-02	ci left: 1.547842e-01	ci right 1.574296e-01	k: 45270	n:290000
STARD7   290000 perm   97 sec   (2993 perm/sec)   p_kst 1.561034e-01   p_cons 3.731034e-03   p_joint 5.703448e-02

Joint ci ratio: 2.763063e-02	ci left: 6.200398e-02	ci right 6.374448e-02	k: 18861	n:300000
Cons ci ratio: 1.169658e-01	ci left: 3.511765e-03	ci right 3.951240e-03	k: 1118	n:300000
KS ci ratio: 1.664523e-02	ci left: 1.547265e-01	ci right 1.573268e-01	k: 46807	n:300000
STARD7   300000 perm   102 sec   (2954 perm/sec)   p_kst 1.560233e-01   p_cons 3.726667e-03   p_joint 6.287000e-02

Joint ci ratio: 2.628783e-02	ci left: 6.604857e-02	ci right 6.781115e-02	k: 20747	n:310000
Cons ci ratio: 1.150288e-01	ci left: 3.517507e-03	ci right 3.949916e-03	k: 1156	n:310000
KS ci ratio: 1.637522e-02	ci left: 1.547371e-01	ci right 1.572951e-01	k: 48364	n:310000
STARD7   310000 perm   106 sec   (2916 perm/sec)   p_kst 1.560129e-01   p_cons 3.729032e-03   p_joint 6.692581e-02

Joint ci ratio: 2.572755e-02	ci left: 6.676978e-02	ci right 6.851306e-02	k: 21644	n:320000
Cons ci ratio: 1.129009e-01	ci left: 3.541168e-03	ci right 3.967896e-03	k: 1200	n:320000
KS ci ratio: 1.611850e-02	ci left: 1.547381e-01	ci right 1.572556e-01	k: 49918	n:320000
STARD7   320000 perm   111 sec   (2879 perm/sec)   p_kst 1.559937e-01   p_cons 3.750000e-03   p_joint 6.763750e-02

Joint ci ratio: 2.463490e-02	ci left: 7.038211e-02	ci right 7.214058e-02	k: 23515	n:330000
Cons ci ratio: 1.112913e-01	ci left: 3.536946e-03	ci right 3.956691e-03	k: 1235	n:330000
KS ci ratio: 1.587295e-02	ci left: 1.547484e-01	ci right 1.572273e-01	k: 51475	n:330000
STARD7   330000 perm   116 sec   (2843 perm/sec)   p_kst 1.559848e-01   p_cons 3.742424e-03   p_joint 7.125758e-02

Joint ci ratio: 3.307157e-02	ci left: 3.902572e-02	ci right 4.034096e-02	k: 13491	n:340000
Cons ci ratio: 9.789202e-02	ci left: 4.464253e-03	ci right 4.926604e-03	k: 1595	n:340000
KS ci ratio: 1.563636e-02	ci left: 1.547906e-01	ci right 1.572329e-01	k: 53043	n:340000
STARD7   340000 perm   121 sec   (2807 perm/sec)   p_kst 1.560088e-01   p_cons 4.691176e-03   p_joint 3.967941e-02

Outputting figure to mutsig2_images.part000000000168/STARD7.4_1145_340000_0.15601_0.0046912_0.039679.png
                gene_name: STARD7
               theta_stop: 0.098 
                    nperm: 340000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.0047 
      ci_cons_bounds_left: 0.0045 
     ci_cons_bounds_right: 0.0049 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.040 

Current progress: 40 percent done.
STAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
KS ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
STAT1   10000 perm   2 sec   (5057 perm/sec)   p_kst 6.804000e-01   p_cons 8.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT1.4_2349_10000_0.6804_0.8735_1.png
                gene_name: STAT1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
STAT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
KS ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
STAT5B   10000 perm   2 sec   (4998 perm/sec)   p_kst 1.183000e-01   p_cons 5.700000e-03   p_joint 9.900000e-03

Joint ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
Cons ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
STAT5B   20000 perm   4 sec   (4506 perm/sec)   p_kst 1.220500e-01   p_cons 6.650000e-03   p_joint 1.475000e-02

Joint ci ratio: 1.848616e-01	ci left: 1.340044e-02	ci right 1.616136e-02	k: 442	n:30000
Cons ci ratio: 2.741931e-01	ci left: 5.839277e-03	ci right 7.724814e-03	k: 202	n:30000
KS ci ratio: 6.192434e-02	ci left: 1.141726e-01	ci right 1.215016e-01	k: 3534	n:30000
STAT5B   30000 perm   7 sec   (4327 perm/sec)   p_kst 1.178000e-01   p_cons 6.733333e-03   p_joint 1.473333e-02

Joint ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
Cons ci ratio: 2.386457e-01	ci left: 5.900505e-03	ci right 7.522355e-03	k: 267	n:40000
KS ci ratio: 5.370143e-02	ci left: 1.143844e-01	ci right 1.207213e-01	k: 4701	n:40000
STAT5B   40000 perm   10 sec   (4197 perm/sec)   p_kst 1.175250e-01   p_cons 6.675000e-03   p_joint 8.725000e-03

Joint ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
Cons ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
KS ci ratio: 4.867488e-02	ci left: 1.120182e-01	ci right 1.176266e-01	k: 5740	n:50000
STAT5B   50000 perm   12 sec   (4086 perm/sec)   p_kst 1.148000e-01   p_cons 2.620000e-03   p_joint 8.460000e-03

Joint ci ratio: 2.509563e-01	ci left: 3.541977e-03	ci right 4.573571e-03	k: 242	n:60000
Cons ci ratio: 3.196637e-01	ci left: 2.100991e-03	ci right 2.914990e-03	k: 149	n:60000
KS ci ratio: 4.457734e-02	ci left: 1.116159e-01	ci right 1.167214e-01	k: 6849	n:60000
STAT5B   60000 perm   15 sec   (3987 perm/sec)   p_kst 1.141500e-01   p_cons 2.483333e-03   p_joint 4.033333e-03

Joint ci ratio: 2.603314e-01	ci left: 2.808534e-03	ci right 3.662037e-03	k: 225	n:70000
Cons ci ratio: 3.029745e-01	ci left: 2.024733e-03	ci right 2.760345e-03	k: 166	n:70000
KS ci ratio: 4.129299e-02	ci left: 1.116970e-01	ci right 1.164207e-01	k: 7983	n:70000
STAT5B   70000 perm   18 sec   (3907 perm/sec)   p_kst 1.140429e-01   p_cons 2.371429e-03   p_joint 3.214286e-03

Joint ci ratio: 2.413184e-01	ci left: 2.890947e-03	ci right 3.695740e-03	k: 262	n:80000
Cons ci ratio: 2.847993e-01	ci left: 2.026386e-03	ci right 2.710502e-03	k: 188	n:80000
KS ci ratio: 3.853455e-02	ci left: 1.123261e-01	ci right 1.167519e-01	k: 9162	n:80000
STAT5B   80000 perm   21 sec   (3830 perm/sec)   p_kst 1.145250e-01   p_cons 2.350000e-03   p_joint 3.275000e-03

Joint ci ratio: 1.853648e-01	ci left: 4.486050e-03	ci right 5.412967e-03	k: 444	n:90000
Cons ci ratio: 2.676454e-01	ci left: 2.059793e-03	ci right 2.706283e-03	k: 213	n:90000
KS ci ratio: 3.634941e-02	ci left: 1.123494e-01	ci right 1.165199e-01	k: 10298	n:90000
STAT5B   90000 perm   24 sec   (3762 perm/sec)   p_kst 1.144222e-01   p_cons 2.366667e-03   p_joint 4.933333e-03

Joint ci ratio: 1.786790e-01	ci left: 4.361931e-03	ci right 5.227177e-03	k: 478	n:100000
Cons ci ratio: 2.570606e-01	ci left: 2.021974e-03	ci right 2.627471e-03	k: 231	n:100000
KS ci ratio: 3.453922e-02	ci left: 1.121357e-01	ci right 1.160867e-01	k: 11410	n:100000
STAT5B   100000 perm   27 sec   (3697 perm/sec)   p_kst 1.141000e-01   p_cons 2.310000e-03   p_joint 4.780000e-03

Joint ci ratio: 1.804286e-01	ci left: 3.887163e-03	ci right 4.666603e-03	k: 469	n:110000
Cons ci ratio: 2.428195e-01	ci left: 2.076779e-03	ci right 2.659046e-03	k: 259	n:110000
KS ci ratio: 3.288324e-02	ci left: 1.125247e-01	ci right 1.162957e-01	k: 12584	n:110000
STAT5B   110000 perm   30 sec   (3637 perm/sec)   p_kst 1.144000e-01   p_cons 2.354545e-03   p_joint 4.263636e-03

Joint ci ratio: 1.615372e-01	ci left: 4.488759e-03	ci right 5.285458e-03	k: 585	n:120000
Cons ci ratio: 2.287281e-01	ci left: 2.162493e-03	ci right 2.728647e-03	k: 292	n:120000
KS ci ratio: 3.143820e-02	ci left: 1.128939e-01	ci right 1.165080e-01	k: 13763	n:120000
STAT5B   120000 perm   34 sec   (3577 perm/sec)   p_kst 1.146917e-01   p_cons 2.433333e-03   p_joint 4.875000e-03

Joint ci ratio: 1.551795e-01	ci left: 4.505463e-03	ci right 5.270726e-03	k: 634	n:130000
Cons ci ratio: 2.238267e-01	ci left: 2.090471e-03	ci right 2.624422e-03	k: 305	n:130000
KS ci ratio: 3.024496e-02	ci left: 1.126974e-01	ci right 1.161659e-01	k: 14875	n:130000
STAT5B   130000 perm   37 sec   (3518 perm/sec)   p_kst 1.144231e-01   p_cons 2.346154e-03   p_joint 4.876923e-03

Joint ci ratio: 1.513065e-01	ci left: 4.410303e-03	ci right 5.139012e-03	k: 667	n:140000
Cons ci ratio: 2.158617e-01	ci left: 2.096394e-03	ci right 2.610279e-03	k: 328	n:140000
KS ci ratio: 2.909283e-02	ci left: 1.131204e-01	ci right 1.164670e-01	k: 16070	n:140000
STAT5B   140000 perm   40 sec   (3465 perm/sec)   p_kst 1.147857e-01   p_cons 2.342857e-03   p_joint 4.764286e-03

Joint ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
Cons ci ratio: 2.069304e-01	ci left: 2.139741e-03	ci right 2.639804e-03	k: 357	n:150000
KS ci ratio: 2.812751e-02	ci left: 1.130253e-01	ci right 1.162563e-01	k: 17195	n:150000
STAT5B   150000 perm   44 sec   (3412 perm/sec)   p_kst 1.146333e-01   p_cons 2.380000e-03   p_joint 4.446667e-03

Joint ci ratio: 1.250925e-01	ci left: 5.718265e-03	ci right 6.487297e-03	k: 975	n:160000
Cons ci ratio: 2.030055e-01	ci left: 2.089011e-03	ci right 2.566809e-03	k: 371	n:160000
KS ci ratio: 2.722462e-02	ci left: 1.131487e-01	ci right 1.162778e-01	k: 18353	n:160000
STAT5B   160000 perm   48 sec   (3359 perm/sec)   p_kst 1.147062e-01   p_cons 2.318750e-03   p_joint 6.093750e-03

Joint ci ratio: 1.212400e-01	ci left: 5.741072e-03	ci right 6.487687e-03	k: 1038	n:170000
Cons ci ratio: 1.967573e-01	ci left: 2.100241e-03	ci right 2.564051e-03	k: 395	n:170000
KS ci ratio: 2.639505e-02	ci left: 1.133234e-01	ci right 1.163604e-01	k: 19522	n:170000
STAT5B   170000 perm   51 sec   (3311 perm/sec)   p_kst 1.148353e-01   p_cons 2.323529e-03   p_joint 6.105882e-03

Joint ci ratio: 1.063274e-01	ci left: 7.095780e-03	ci right 7.897983e-03	k: 1348	n:180000
Cons ci ratio: 1.899228e-01	ci left: 2.136879e-03	ci right 2.590497e-03	k: 424	n:180000
KS ci ratio: 2.569170e-02	ci left: 1.130490e-01	ci right 1.159967e-01	k: 20613	n:180000
STAT5B   180000 perm   55 sec   (3264 perm/sec)   p_kst 1.145167e-01   p_cons 2.355556e-03   p_joint 7.488889e-03

Joint ci ratio: 1.123324e-01	ci left: 6.010537e-03	ci right 6.730964e-03	k: 1209	n:190000
Cons ci ratio: 1.841614e-01	ci left: 2.159867e-03	ci right 2.602903e-03	k: 451	n:190000
KS ci ratio: 2.502350e-02	ci left: 1.129511e-01	ci right 1.158186e-01	k: 21732	n:190000
STAT5B   190000 perm   59 sec   (3217 perm/sec)   p_kst 1.143789e-01   p_cons 2.373684e-03   p_joint 6.363158e-03

Joint ci ratio: 1.005636e-01	ci left: 7.160657e-03	ci right 7.923720e-03	k: 1507	n:200000
Cons ci ratio: 1.775982e-01	ci left: 2.214184e-03	ci right 2.650438e-03	k: 485	n:200000
KS ci ratio: 2.441994e-02	ci left: 1.127396e-01	ci right 1.155316e-01	k: 22826	n:200000
STAT5B   200000 perm   63 sec   (3169 perm/sec)   p_kst 1.141300e-01   p_cons 2.425000e-03   p_joint 7.535000e-03

Joint ci ratio: 9.802782e-02	ci left: 7.186527e-03	ci right 7.931925e-03	k: 1586	n:210000
Cons ci ratio: 1.728603e-01	ci left: 2.231681e-03	ci right 2.658429e-03	k: 512	n:210000
KS ci ratio: 2.385128e-02	ci left: 1.126058e-01	ci right 1.153287e-01	k: 23932	n:210000
STAT5B   210000 perm   67 sec   (3123 perm/sec)   p_kst 1.139619e-01   p_cons 2.438095e-03   p_joint 7.552381e-03

Joint ci ratio: 9.602374e-02	ci left: 7.157016e-03	ci right 7.883323e-03	k: 1653	n:220000
Cons ci ratio: 1.699077e-01	ci left: 2.208547e-03	ci right 2.622918e-03	k: 530	n:220000
KS ci ratio: 2.330063e-02	ci left: 1.126567e-01	ci right 1.153171e-01	k: 25076	n:220000
STAT5B   220000 perm   71 sec   (3081 perm/sec)   p_kst 1.139818e-01   p_cons 2.409091e-03   p_joint 7.513636e-03

Joint ci ratio: 9.422052e-02	ci left: 7.117476e-03	ci right 7.825456e-03	k: 1717	n:230000
Cons ci ratio: 1.651527e-01	ci left: 2.241659e-03	ci right 2.649303e-03	k: 561	n:230000
KS ci ratio: 2.276636e-02	ci left: 1.128812e-01	ci right 1.154850e-01	k: 26261	n:230000
STAT5B   230000 perm   76 sec   (3041 perm/sec)   p_kst 1.141783e-01   p_cons 2.439130e-03   p_joint 7.465217e-03

Joint ci ratio: 9.209953e-02	ci left: 7.146486e-03	ci right 7.840488e-03	k: 1797	n:240000
Cons ci ratio: 1.628537e-01	ci left: 2.212184e-03	ci right 2.608319e-03	k: 577	n:240000
KS ci ratio: 2.226859e-02	ci left: 1.130752e-01	ci right 1.156257e-01	k: 27443	n:240000
STAT5B   240000 perm   80 sec   (3001 perm/sec)   p_kst 1.143458e-01   p_cons 2.404167e-03   p_joint 7.487500e-03

Joint ci ratio: 8.997092e-02	ci left: 7.196803e-03	ci right 7.878688e-03	k: 1883	n:250000
Cons ci ratio: 1.605127e-01	ci left: 2.188943e-03	ci right 2.574738e-03	k: 594	n:250000
KS ci ratio: 2.179737e-02	ci left: 1.132981e-01	ci right 1.157989e-01	k: 28636	n:250000
STAT5B   250000 perm   84 sec   (2961 perm/sec)   p_kst 1.145440e-01   p_cons 2.376000e-03   p_joint 7.532000e-03

Joint ci ratio: 8.830007e-02	ci left: 7.190752e-03	ci right 7.858758e-03	k: 1955	n:260000
Cons ci ratio: 1.577538e-01	ci left: 2.182305e-03	ci right 2.559694e-03	k: 615	n:260000
KS ci ratio: 2.137914e-02	ci left: 1.132746e-01	ci right 1.157263e-01	k: 29769	n:260000
STAT5B   260000 perm   89 sec   (2923 perm/sec)   p_kst 1.144962e-01   p_cons 2.365385e-03   p_joint 7.519231e-03

Joint ci ratio: 8.616419e-02	ci left: 7.279487e-03	ci right 7.938556e-03	k: 2053	n:270000
Cons ci ratio: 1.542850e-01	ci left: 2.201136e-03	ci right 2.572637e-03	k: 643	n:270000
KS ci ratio: 2.097873e-02	ci left: 1.133049e-01	ci right 1.157108e-01	k: 30916	n:270000
STAT5B   270000 perm   93 sec   (2888 perm/sec)   p_kst 1.145037e-01   p_cons 2.381481e-03   p_joint 7.603704e-03

Joint ci ratio: 8.467315e-02	ci left: 7.274650e-03	ci right 7.921319e-03	k: 2126	n:280000
Cons ci ratio: 1.512612e-01	ci left: 2.211832e-03	ci right 2.577160e-03	k: 669	n:280000
KS ci ratio: 2.059602e-02	ci left: 1.133726e-01	ci right 1.157354e-01	k: 32074	n:280000
STAT5B   280000 perm   98 sec   (2851 perm/sec)   p_kst 1.145500e-01   p_cons 2.389286e-03   p_joint 7.592857e-03

Joint ci ratio: 8.352514e-02	ci left: 7.222961e-03	ci right 7.855906e-03	k: 2185	n:290000
Cons ci ratio: 1.484086e-01	ci left: 2.221857e-03	ci right 2.581306e-03	k: 695	n:290000
KS ci ratio: 2.023627e-02	ci left: 1.134085e-01	ci right 1.157303e-01	k: 33224	n:290000
STAT5B   290000 perm   103 sec   (2817 perm/sec)   p_kst 1.145655e-01   p_cons 2.396552e-03   p_joint 7.534483e-03

Joint ci ratio: 9.145537e-02	ci left: 5.808198e-03	ci right 6.368075e-03	k: 1825	n:300000
Cons ci ratio: 1.462198e-01	ci left: 2.215215e-03	ci right 2.567841e-03	k: 716	n:300000
KS ci ratio: 1.988591e-02	ci left: 1.135319e-01	ci right 1.158155e-01	k: 34401	n:300000
STAT5B   300000 perm   108 sec   (2783 perm/sec)   p_kst 1.146700e-01   p_cons 2.386667e-03   p_joint 6.083333e-03

Joint ci ratio: 8.069473e-02	ci left: 7.249862e-03	ci right 7.862623e-03	k: 2341	n:310000
Cons ci ratio: 1.437352e-01	ci left: 2.221476e-03	ci right 2.568576e-03	k: 741	n:310000
KS ci ratio: 1.956494e-02	ci left: 1.135256e-01	ci right 1.157719e-01	k: 35540	n:310000
STAT5B   310000 perm   113 sec   (2750 perm/sec)   p_kst 1.146452e-01   p_cons 2.390323e-03   p_joint 7.551613e-03

Joint ci ratio: 7.946609e-02	ci left: 7.246860e-03	ci right 7.849610e-03	k: 2414	n:320000
Cons ci ratio: 1.410050e-01	ci left: 2.239454e-03	ci right 2.582157e-03	k: 770	n:320000
KS ci ratio: 1.925251e-02	ci left: 1.135885e-01	ci right 1.157997e-01	k: 36701	n:320000
STAT5B   320000 perm   118 sec   (2719 perm/sec)   p_kst 1.146906e-01   p_cons 2.406250e-03   p_joint 7.543750e-03

Joint ci ratio: 8.181115e-02	ci left: 6.626328e-03	ci right 7.194504e-03	k: 2279	n:330000
Cons ci ratio: 1.388603e-01	ci left: 2.241773e-03	ci right 2.579181e-03	k: 794	n:330000
KS ci ratio: 1.895148e-02	ci left: 1.136810e-01	ci right 1.158591e-01	k: 37873	n:330000
STAT5B   330000 perm   123 sec   (2688 perm/sec)   p_kst 1.147667e-01   p_cons 2.406061e-03   p_joint 6.906061e-03

Joint ci ratio: 8.044560e-02	ci left: 6.656198e-03	ci right 7.216961e-03	k: 2357	n:340000
Cons ci ratio: 1.368944e-01	ci left: 2.241152e-03	ci right 2.573302e-03	k: 817	n:340000
KS ci ratio: 1.868252e-02	ci left: 1.135692e-01	ci right 1.157139e-01	k: 38977	n:340000
STAT5B   340000 perm   128 sec   (2657 perm/sec)   p_kst 1.146382e-01   p_cons 2.402941e-03   p_joint 6.932353e-03

Joint ci ratio: 7.957498e-02	ci left: 6.611613e-03	ci right 7.162313e-03	k: 2409	n:350000
Cons ci ratio: 1.353327e-01	ci left: 2.229555e-03	ci right 2.555914e-03	k: 836	n:350000
KS ci ratio: 1.842495e-02	ci left: 1.134611e-01	ci right 1.155739e-01	k: 40080	n:350000
STAT5B   350000 perm   133 sec   (2626 perm/sec)   p_kst 1.145143e-01   p_cons 2.388571e-03   p_joint 6.882857e-03

Joint ci ratio: 7.993401e-02	ci left: 6.370756e-03	ci right 6.903899e-03	k: 2388	n:360000
Cons ci ratio: 1.335888e-01	ci left: 2.226678e-03	ci right 2.548082e-03	k: 858	n:360000
KS ci ratio: 1.817327e-02	ci left: 1.134090e-01	ci right 1.154917e-01	k: 41201	n:360000
STAT5B   360000 perm   139 sec   (2595 perm/sec)   p_kst 1.144472e-01   p_cons 2.383333e-03   p_joint 6.633333e-03

Joint ci ratio: 7.439134e-02	ci left: 7.171455e-03	ci right 7.728193e-03	k: 2755	n:370000
Cons ci ratio: 1.319107e-01	ci left: 2.223982e-03	ci right 2.540648e-03	k: 880	n:370000
KS ci ratio: 1.792755e-02	ci left: 1.134057e-01	ci right 1.154598e-01	k: 42339	n:370000
STAT5B   370000 perm   144 sec   (2566 perm/sec)   p_kst 1.144297e-01   p_cons 2.378378e-03   p_joint 7.445946e-03

Joint ci ratio: 7.343849e-02	ci left: 7.168703e-03	ci right 7.717795e-03	k: 2827	n:380000
Cons ci ratio: 1.297195e-01	ci left: 2.241822e-03	ci right 2.555317e-03	k: 910	n:380000
KS ci ratio: 1.768948e-02	ci left: 1.134263e-01	ci right 1.154533e-01	k: 43486	n:380000
STAT5B   380000 perm   150 sec   (2537 perm/sec)   p_kst 1.144368e-01   p_cons 2.394737e-03   p_joint 7.439474e-03

Joint ci ratio: 7.250874e-02	ci left: 7.168654e-03	ci right 7.710498e-03	k: 2900	n:390000
Cons ci ratio: 1.282502e-01	ci left: 2.236447e-03	ci right 2.545379e-03	k: 931	n:390000
KS ci ratio: 1.745115e-02	ci left: 1.135559e-01	ci right 1.155575e-01	k: 44676	n:390000
STAT5B   390000 perm   155 sec   (2510 perm/sec)   p_kst 1.145538e-01   p_cons 2.387179e-03   p_joint 7.435897e-03

Joint ci ratio: 7.200476e-02	ci left: 7.090075e-03	ci right 7.622099e-03	k: 2941	n:400000
Cons ci ratio: 1.262336e-01	ci left: 2.253150e-03	ci right 2.559129e-03	k: 961	n:400000
KS ci ratio: 1.723430e-02	ci left: 1.135372e-01	ci right 1.155134e-01	k: 45809	n:400000
STAT5B   400000 perm   161 sec   (2482 perm/sec)   p_kst 1.145225e-01   p_cons 2.402500e-03   p_joint 7.352500e-03

Joint ci ratio: 7.181483e-02	ci left: 6.955452e-03	ci right 7.475939e-03	k: 2957	n:410000
Cons ci ratio: 1.247513e-01	ci left: 2.252532e-03	ci right 2.554569e-03	k: 984	n:410000
KS ci ratio: 1.703005e-02	ci left: 1.134637e-01	ci right 1.154150e-01	k: 46919	n:410000
STAT5B   410000 perm   167 sec   (2456 perm/sec)   p_kst 1.144366e-01   p_cons 2.400000e-03   p_joint 7.212195e-03

Joint ci ratio: 7.375409e-02	ci left: 6.434463e-03	ci right 6.929522e-03	k: 2805	n:420000
Cons ci ratio: 1.231365e-01	ci left: 2.258886e-03	ci right 2.557569e-03	k: 1010	n:420000
KS ci ratio: 1.682103e-02	ci left: 1.135361e-01	ci right 1.154644e-01	k: 48089	n:420000
STAT5B   420000 perm   173 sec   (2428 perm/sec)   p_kst 1.144976e-01   p_cons 2.404762e-03   p_joint 6.678571e-03

Joint ci ratio: 7.007131e-02	ci left: 6.972310e-03	ci right 7.480876e-03	k: 3106	n:430000
Cons ci ratio: 1.212900e-01	ci left: 2.276244e-03	ci right 2.572385e-03	k: 1041	n:430000
KS ci ratio: 1.662905e-02	ci left: 1.134895e-01	ci right 1.153948e-01	k: 49209	n:430000
STAT5B   430000 perm   179 sec   (2403 perm/sec)   p_kst 1.144395e-01   p_cons 2.420930e-03   p_joint 7.223256e-03

Joint ci ratio: 6.941639e-02	ci left: 6.945597e-03	ci right 7.447289e-03	k: 3165	n:440000
Cons ci ratio: 1.202566e-01	ci left: 2.264183e-03	ci right 2.556067e-03	k: 1059	n:440000
KS ci ratio: 1.643208e-02	ci left: 1.135855e-01	ci right 1.154696e-01	k: 50391	n:440000
STAT5B   440000 perm   185 sec   (2378 perm/sec)   p_kst 1.145250e-01   p_cons 2.406818e-03   p_joint 7.193182e-03

Joint ci ratio: 6.791517e-02	ci left: 7.099223e-03	ci right 7.600485e-03	k: 3306	n:450000
Cons ci ratio: 1.186439e-01	ci left: 2.276388e-03	ci right 2.565634e-03	k: 1088	n:450000
KS ci ratio: 1.624888e-02	ci left: 1.135910e-01	ci right 1.154540e-01	k: 51534	n:450000
STAT5B   450000 perm   191 sec   (2353 perm/sec)   p_kst 1.145200e-01   p_cons 2.417778e-03   p_joint 7.346667e-03

Joint ci ratio: 6.784835e-02	ci left: 6.959834e-03	ci right 7.450752e-03	k: 3313	n:460000
Cons ci ratio: 1.174107e-01	ci left: 2.275425e-03	ci right 2.561335e-03	k: 1111	n:460000
KS ci ratio: 1.607409e-02	ci left: 1.135660e-01	ci right 1.154084e-01	k: 52663	n:460000
STAT5B   460000 perm   198 sec   (2329 perm/sec)   p_kst 1.144848e-01   p_cons 2.415217e-03   p_joint 7.202174e-03

Joint ci ratio: 6.700362e-02	ci left: 6.987466e-03	ci right 7.473958e-03	k: 3397	n:470000
Cons ci ratio: 1.162665e-01	ci left: 2.272452e-03	ci right 2.555014e-03	k: 1133	n:470000
KS ci ratio: 1.589831e-02	ci left: 1.136249e-01	ci right 1.154479e-01	k: 53831	n:470000
STAT5B   470000 perm   204 sec   (2306 perm/sec)   p_kst 1.145340e-01   p_cons 2.410638e-03   p_joint 7.227660e-03

Joint ci ratio: 6.633375e-02	ci left: 6.983247e-03	ci right 7.464397e-03	k: 3466	n:480000
Cons ci ratio: 1.152551e-01	ci left: 2.265569e-03	ci right 2.544658e-03	k: 1153	n:480000
KS ci ratio: 1.572801e-02	ci left: 1.136835e-01	ci right 1.154878e-01	k: 55000	n:480000
STAT5B   480000 perm   210 sec   (2283 perm/sec)   p_kst 1.145833e-01   p_cons 2.402083e-03   p_joint 7.220833e-03

Joint ci ratio: 6.560886e-02	ci left: 6.995283e-03	ci right 7.471796e-03	k: 3543	n:490000
Cons ci ratio: 1.141722e-01	ci left: 2.262942e-03	ci right 2.538912e-03	k: 1175	n:490000
KS ci ratio: 1.556777e-02	ci left: 1.136789e-01	ci right 1.154645e-01	k: 56139	n:490000
STAT5B   490000 perm   217 sec   (2259 perm/sec)   p_kst 1.145694e-01   p_cons 2.397959e-03   p_joint 7.230612e-03

Joint ci ratio: 5.600254e-02	ci left: 9.432152e-03	ci right 9.977552e-03	k: 4851	n:500000
Cons ci ratio: 1.129775e-01	ci left: 2.266263e-03	ci right 2.539554e-03	k: 1200	n:500000
KS ci ratio: 1.540913e-02	ci left: 1.137163e-01	ci right 1.154842e-01	k: 57299	n:500000
STAT5B   500000 perm   224 sec   (2237 perm/sec)   p_kst 1.145980e-01   p_cons 2.400000e-03   p_joint 9.702000e-03

Joint ci ratio: 5.669619e-02	ci left: 9.022908e-03	ci right 9.551317e-03	k: 4735	n:510000
Cons ci ratio: 1.116827e-01	ci left: 2.275187e-03	ci right 2.546202e-03	k: 1228	n:510000
KS ci ratio: 1.525746e-02	ci left: 1.137231e-01	ci right 1.154735e-01	k: 58444	n:510000
STAT5B   510000 perm   230 sec   (2215 perm/sec)   p_kst 1.145961e-01   p_cons 2.407843e-03   p_joint 9.284314e-03

Joint ci ratio: 5.601893e-02	ci left: 9.067433e-03	ci right 9.591902e-03	k: 4850	n:520000
Cons ci ratio: 1.105195e-01	ci left: 2.280044e-03	ci right 2.548625e-03	k: 1254	n:520000
KS ci ratio: 1.510432e-02	ci left: 1.138082e-01	ci right 1.155422e-01	k: 59630	n:520000
STAT5B   520000 perm   237 sec   (2194 perm/sec)   p_kst 1.146731e-01   p_cons 2.411538e-03   p_joint 9.326923e-03

Joint ci ratio: 5.541043e-02	ci left: 9.095427e-03	ci right 9.615618e-03	k: 4957	n:530000
Cons ci ratio: 1.095206e-01	ci left: 2.279226e-03	ci right 2.545128e-03	k: 1277	n:530000
KS ci ratio: 1.495916e-02	ci left: 1.138433e-01	ci right 1.155610e-01	k: 60791	n:530000
STAT5B   530000 perm   244 sec   (2174 perm/sec)   p_kst 1.147000e-01   p_cons 2.409434e-03   p_joint 9.352830e-03

Joint ci ratio: 5.488700e-02	ci left: 9.100494e-03	ci right 9.615902e-03	k: 5052	n:540000
Cons ci ratio: 1.088001e-01	ci left: 2.267640e-03	ci right 2.530337e-03	k: 1294	n:540000
KS ci ratio: 1.481474e-02	ci left: 1.139232e-01	ci right 1.156254e-01	k: 61977	n:540000
STAT5B   540000 perm   251 sec   (2153 perm/sec)   p_kst 1.147722e-01   p_cons 2.396296e-03   p_joint 9.355556e-03

Joint ci ratio: 5.453878e-02	ci left: 9.051589e-03	ci right 9.560872e-03	k: 5117	n:550000
Cons ci ratio: 1.078467e-01	ci left: 2.267095e-03	ci right 2.527282e-03	k: 1317	n:550000
KS ci ratio: 1.468112e-02	ci left: 1.139079e-01	ci right 1.155943e-01	k: 63112	n:550000
STAT5B   550000 perm   258 sec   (2133 perm/sec)   p_kst 1.147491e-01   p_cons 2.394545e-03   p_joint 9.303636e-03

Joint ci ratio: 5.402376e-02	ci left: 9.062580e-03	ci right 9.567516e-03	k: 5215	n:560000
Cons ci ratio: 1.069180e-01	ci left: 2.266579e-03	ci right 2.524326e-03	k: 1340	n:560000
KS ci ratio: 1.455207e-02	ci left: 1.138790e-01	ci right 1.155500e-01	k: 64239	n:560000
STAT5B   560000 perm   265 sec   (2113 perm/sec)   p_kst 1.147125e-01   p_cons 2.392857e-03   p_joint 9.312500e-03

Joint ci ratio: 5.473694e-02	ci left: 8.673379e-03	ci right 9.163211e-03	k: 5082	n:570000
Cons ci ratio: 1.059350e-01	ci left: 2.269507e-03	ci right 2.525066e-03	k: 1365	n:570000
KS ci ratio: 1.442300e-02	ci left: 1.138983e-01	ci right 1.155547e-01	k: 65393	n:570000
STAT5B   570000 perm   272 sec   (2093 perm/sec)   p_kst 1.147246e-01   p_cons 2.394737e-03   p_joint 8.915789e-03

Joint ci ratio: 5.335038e-02	ci left: 8.976299e-03	ci right 9.470001e-03	k: 5348	n:580000
Cons ci ratio: 1.049030e-01	ci left: 2.275702e-03	ci right 2.529309e-03	k: 1392	n:580000
KS ci ratio: 1.429197e-02	ci left: 1.139927e-01	ci right 1.156353e-01	k: 66591	n:580000
STAT5B   580000 perm   280 sec   (2074 perm/sec)   p_kst 1.148121e-01   p_cons 2.400000e-03   p_joint 9.220690e-03

Joint ci ratio: 5.295147e-02	ci left: 8.959620e-03	ci right 9.448608e-03	k: 5429	n:590000
Cons ci ratio: 1.039373e-01	ci left: 2.280048e-03	ci right 2.531657e-03	k: 1418	n:590000
KS ci ratio: 1.417378e-02	ci left: 1.139505e-01	ci right 1.155788e-01	k: 67710	n:590000
STAT5B   590000 perm   287 sec   (2056 perm/sec)   p_kst 1.147627e-01   p_cons 2.403390e-03   p_joint 9.201695e-03

Joint ci ratio: 5.224182e-02	ci left: 9.053727e-03	ci right 9.541029e-03	k: 5577	n:600000
Cons ci ratio: 1.029622e-01	ci left: 2.285884e-03	ci right 2.535626e-03	k: 1445	n:600000
KS ci ratio: 1.405951e-02	ci left: 1.138947e-01	ci right 1.155090e-01	k: 68820	n:600000
STAT5B   600000 perm   297 sec   (2019 perm/sec)   p_kst 1.147000e-01   p_cons 2.408333e-03   p_joint 9.295000e-03

Joint ci ratio: 5.267642e-02	ci left: 8.759664e-03	ci right 9.235180e-03	k: 5487	n:610000
Cons ci ratio: 1.020139e-01	ci left: 2.291538e-03	ci right 2.539455e-03	k: 1472	n:610000
KS ci ratio: 1.394244e-02	ci left: 1.139210e-01	ci right 1.155221e-01	k: 69979	n:610000
STAT5B   610000 perm   308 sec   (1979 perm/sec)   p_kst 1.147197e-01   p_cons 2.413115e-03   p_joint 8.995082e-03

Joint ci ratio: 5.220253e-02	ci left: 8.777557e-03	ci right 9.249629e-03	k: 5587	n:620000
Cons ci ratio: 1.011929e-01	ci left: 2.292304e-03	ci right 2.538189e-03	k: 1496	n:620000
KS ci ratio: 1.382737e-02	ci left: 1.139593e-01	ci right 1.155476e-01	k: 71146	n:620000
STAT5B   620000 perm   316 sec   (1963 perm/sec)   p_kst 1.147516e-01   p_cons 2.412903e-03   p_joint 9.011290e-03

Joint ci ratio: 5.184708e-02	ci left: 8.758861e-03	ci right 9.226623e-03	k: 5664	n:630000
Cons ci ratio: 1.004576e-01	ci left: 2.289958e-03	ci right 2.533701e-03	k: 1518	n:630000
KS ci ratio: 1.372014e-02	ci left: 1.139220e-01	ci right 1.154974e-01	k: 72266	n:630000
STAT5B   630000 perm   324 sec   (1947 perm/sec)   p_kst 1.147079e-01   p_cons 2.409524e-03   p_joint 8.990476e-03

Joint ci ratio: 5.140404e-02	ci left: 8.773154e-03	ci right 9.237557e-03	k: 5762	n:640000
Cons ci ratio: 9.967325e-02	ci left: 2.290739e-03	ci right 2.532550e-03	k: 1542	n:640000
KS ci ratio: 1.360993e-02	ci left: 1.139670e-01	ci right 1.155302e-01	k: 73438	n:640000
STAT5B   640000 perm   331 sec   (1931 perm/sec)   p_kst 1.147469e-01   p_cons 2.409375e-03   p_joint 9.003125e-03

Outputting figure to mutsig2_images.part000000000168/STAT5B.4_2436_640000_0.11475_0.0024094_0.0090031.png
                gene_name: STAT5B
               theta_stop: 0.100 
                    nperm: 640000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0025 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0092 

Current progress: 43 percent done.
STK39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
KS ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
STK39   10000 perm   2 sec   (5477 perm/sec)   p_kst 6.825000e-01   p_cons 7.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK39.4_1710_10000_0.6825_0.7279_1.png
                gene_name: STK39
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
STK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
Cons ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
KS ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
STK4   10000 perm   2 sec   (5887 perm/sec)   p_kst 4.416000e-01   p_cons 2.910000e-01   p_joint 4.985000e-01

Outputting figure to mutsig2_images.part000000000168/STK4.4_1508_10000_0.4416_0.291_0.4985.png
                gene_name: STK4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
STRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.262681e-02	ci left: 5.809875e-01	ci right 6.003596e-01	k: 5907	n:10000
Cons ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
KS ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
STRA6   10000 perm   2 sec   (5207 perm/sec)   p_kst 5.785000e-01   p_cons 3.142000e-01   p_joint 5.907000e-01

Outputting figure to mutsig2_images.part000000000168/STRA6.4_2126_10000_0.5785_0.3142_0.5907.png
                gene_name: STRA6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 48 percent done.
STRA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
KS ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
STRA8   10000 perm   2 sec   (5805 perm/sec)   p_kst 9.083000e-01   p_cons 5.604000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STRA8.4_1027_10000_0.9083_0.5604_1.png
                gene_name: STRA8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
STARD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
STARD3   10000 perm   2 sec   (6074 perm/sec)   p_kst 2.878000e-01   p_cons 7.904000e-01   p_joint 5.171000e-01

Outputting figure to mutsig2_images.part000000000168/STARD3.3_1407_10000_0.2878_0.7904_0.5171.png
                gene_name: STARD3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 52 percent done.
STAT5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
KS ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
STAT5A   10000 perm   2 sec   (5283 perm/sec)   p_kst 8.229000e-01   p_cons 4.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT5A.3_2457_10000_0.8229_0.4852_1.png
                gene_name: STAT5A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
STAU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
KS ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
STAU1   10000 perm   2 sec   (5836 perm/sec)   p_kst 2.839000e-01   p_cons 8.373000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000168/STAU1.3_1800_10000_0.2839_0.8373_0.4522.png
                gene_name: STAU1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 55 percent done.
STC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
Cons ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
STC2   10000 perm   2 sec   (6223 perm/sec)   p_kst 2.370000e-01   p_cons 6.178000e-01   p_joint 3.280000e-01

Outputting figure to mutsig2_images.part000000000168/STC2.3_925_10000_0.237_0.6178_0.328.png
                gene_name: STC2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 57 percent done.
STK25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
STK25   10000 perm   2 sec   (6067 perm/sec)   p_kst 6.200000e-02   p_cons 5.243000e-01   p_joint 8.030000e-02

Joint ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
Cons ci ratio: 2.665328e-02	ci left: 5.125984e-01	ci right 5.264960e-01	k: 10391	n:20000
KS ci ratio: 1.101019e-01	ci left: 5.630945e-02	ci right 6.291930e-02	k: 1191	n:20000
STK25   20000 perm   4 sec   (5282 perm/sec)   p_kst 5.955000e-02   p_cons 5.195500e-01   p_joint 7.960000e-02

Joint ci ratio: 6.642892e-02	ci left: 1.005347e-01	ci right 1.074756e-01	k: 3119	n:30000
Cons ci ratio: 2.176065e-02	ci left: 5.139281e-01	ci right 5.252681e-01	k: 15588	n:30000
KS ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
STK25   30000 perm   6 sec   (4995 perm/sec)   p_kst 5.893333e-02   p_cons 5.196000e-01   p_joint 1.039667e-01

Outputting figure to mutsig2_images.part000000000168/STK25.3_1325_30000_0.058933_0.5196_0.10397.png
                gene_name: STK25
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 58 percent done.
STOML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
Cons ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
KS ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
STOML1   10000 perm   2 sec   (5920 perm/sec)   p_kst 2.153000e-01   p_cons 2.062000e-01   p_joint 3.763000e-01

Outputting figure to mutsig2_images.part000000000168/STOML1.3_1225_10000_0.2153_0.2062_0.3763.png
                gene_name: STOML1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
STRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
Cons ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
STRC   10000 perm   3 sec   (3955 perm/sec)   p_kst 2.146000e-01   p_cons 1.391000e-01   p_joint 2.833000e-01

Outputting figure to mutsig2_images.part000000000168/STRC.3_5444_10000_0.2146_0.1391_0.2833.png
                gene_name: STRC
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 62 percent done.
STX16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
Cons ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
KS ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
STX16   10000 perm   2 sec   (6410 perm/sec)   p_kst 2.200000e-01   p_cons 2.573000e-01   p_joint 2.327000e-01

Outputting figure to mutsig2_images.part000000000168/STX16.3_1014_10000_0.22_0.2573_0.2327.png
                gene_name: STX16
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 63 percent done.
STX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
KS ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
STX19   10000 perm   2 sec   (6288 perm/sec)   p_kst 5.817000e-01   p_cons 8.357000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STX19.3_889_10000_0.5817_0.8357_1.png
                gene_name: STX19
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
STX1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
Cons ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
KS ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
STX1A   10000 perm   2 sec   (6047 perm/sec)   p_kst 4.084000e-01   p_cons 8.940000e-02   p_joint 4.419000e-01

Joint ci ratio: 3.956292e-02	ci left: 3.226875e-01	ci right 3.357621e-01	k: 6584	n:20000
Cons ci ratio: 8.661282e-02	ci left: 8.886219e-02	ci right 9.695661e-02	k: 1857	n:20000
KS ci ratio: 3.357652e-02	ci left: 3.984352e-01	ci right 4.120923e-01	k: 8105	n:20000
STX1A   20000 perm   4 sec   (5435 perm/sec)   p_kst 4.052500e-01   p_cons 9.285000e-02   p_joint 3.292000e-01

Outputting figure to mutsig2_images.part000000000168/STX1A.3_907_20000_0.40525_0.09285_0.3292.png
                gene_name: STX1A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 67 percent done.
STX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
Cons ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
KS ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
STX3   10000 perm   2 sec   (6319 perm/sec)   p_kst 4.661000e-01   p_cons 4.743000e-01   p_joint 5.757000e-01

Outputting figure to mutsig2_images.part000000000168/STX3.3_962_10000_0.4661_0.4743_0.5757.png
                gene_name: STX3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
STAT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
Cons ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
STAT6   10000 perm   2 sec   (5516 perm/sec)   p_kst 2.765000e-01   p_cons 3.298000e-01   p_joint 2.656000e-01

Outputting figure to mutsig2_images.part000000000168/STAT6.2_2628_10000_0.2765_0.3298_0.2656.png
                gene_name: STAT6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 70 percent done.
STBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
Cons ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
KS ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
STBD1   10000 perm   2 sec   (6619 perm/sec)   p_kst 9.219000e-01   p_cons 1.604000e-01   p_joint 2.193000e-01

Outputting figure to mutsig2_images.part000000000168/STBD1.2_1085_10000_0.9219_0.1604_0.2193.png
                gene_name: STBD1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 72 percent done.
STC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
Cons ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
STC1   10000 perm   1 sec   (6728 perm/sec)   p_kst 3.966000e-01   p_cons 6.670000e-01   p_joint 9.204000e-01

Outputting figure to mutsig2_images.part000000000168/STC1.2_760_10000_0.3966_0.667_0.9204.png
                gene_name: STC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 73 percent done.
STEAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
STEAP2   10000 perm   2 sec   (6063 perm/sec)   p_kst 5.833000e-01   p_cons 1.612000e-01   p_joint 3.261000e-01

Outputting figure to mutsig2_images.part000000000168/STEAP2.2_1525_10000_0.5833_0.1612_0.3261.png
                gene_name: STEAP2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 75 percent done.
STEAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 7.454850e-02	ci left: 2.084612e-01	ci right 2.247043e-01	k: 2165	n:10000
STEAP4   10000 perm   2 sec   (6653 perm/sec)   p_kst 2.165000e-01   p_cons 7.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STEAP4.2_1396_10000_0.2165_0.7318_1.png
                gene_name: STEAP4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
STH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
STH   10000 perm   1 sec   (7029 perm/sec)   p_kst 8.723000e-01   p_cons 1.456000e-01   p_joint 3.097000e-01

Outputting figure to mutsig2_images.part000000000168/STH.2_391_10000_0.8723_0.1456_0.3097.png
                gene_name: STH
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 78 percent done.
STK11IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
STK11IP   10000 perm   2 sec   (5174 perm/sec)   p_kst 3.420000e-01   p_cons 6.750000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000168/STK11IP.2_3400_10000_0.342_0.675_0.708.png
                gene_name: STK11IP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 80 percent done.
STK24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
Cons ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
KS ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
STK24   10000 perm   2 sec   (6477 perm/sec)   p_kst 1.331000e-01   p_cons 1.428000e-01   p_joint 4.288000e-01

Outputting figure to mutsig2_images.part000000000168/STK24.2_1422_10000_0.1331_0.1428_0.4288.png
                gene_name: STK24
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 82 percent done.
STK32A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
Cons ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
STK32A   10000 perm   2 sec   (6377 perm/sec)   p_kst 2.594000e-01   p_cons 2.773000e-01   p_joint 3.986000e-01

Outputting figure to mutsig2_images.part000000000168/STK32A.2_1272_10000_0.2594_0.2773_0.3986.png
                gene_name: STK32A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 83 percent done.
STK35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
Cons ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
STK35   10000 perm   2 sec   (6094 perm/sec)   p_kst 2.042000e-01   p_cons 1.160000e-02   p_joint 3.008000e-01

Joint ci ratio: 5.345536e-02	ci left: 2.062041e-01	ci right 2.175798e-01	k: 4237	n:20000
Cons ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
KS ci ratio: 5.421092e-02	ci left: 2.016008e-01	ci right 2.128844e-01	k: 4144	n:20000
STK35   20000 perm   4 sec   (5344 perm/sec)   p_kst 2.072000e-01   p_cons 1.020000e-02   p_joint 2.118500e-01

Joint ci ratio: 5.599964e-02	ci left: 1.364542e-01	ci right 1.443489e-01	k: 4211	n:30000
Cons ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
KS ci ratio: 4.433292e-02	ci left: 2.021297e-01	ci right 2.113272e-01	k: 6201	n:30000
STK35   30000 perm   6 sec   (5040 perm/sec)   p_kst 2.067000e-01   p_cons 1.046667e-02   p_joint 1.403667e-01

Joint ci ratio: 4.226358e-02	ci left: 1.732460e-01	ci right 1.807510e-01	k: 7079	n:40000
Cons ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
KS ci ratio: 3.835648e-02	ci left: 2.030632e-01	ci right 2.110293e-01	k: 8281	n:40000
STK35   40000 perm   8 sec   (4863 perm/sec)   p_kst 2.070250e-01   p_cons 1.025000e-02   p_joint 1.769750e-01

Joint ci ratio: 3.851766e-02	ci left: 1.682845e-01	ci right 1.749137e-01	k: 8579	n:50000
Cons ci ratio: 1.730344e-01	ci left: 9.280380e-03	ci right 1.105718e-02	k: 507	n:50000
KS ci ratio: 3.438778e-02	ci left: 2.027205e-01	ci right 2.098336e-01	k: 10313	n:50000
STK35   50000 perm   11 sec   (4721 perm/sec)   p_kst 2.062600e-01   p_cons 1.014000e-02   p_joint 1.715800e-01

Joint ci ratio: 4.435107e-02	ci left: 1.126392e-01	ci right 1.177647e-01	k: 6911	n:60000
Cons ci ratio: 1.582997e-01	ci left: 9.315360e-03	ci right 1.093255e-02	k: 606	n:60000
KS ci ratio: 3.136736e-02	ci left: 2.032835e-01	ci right 2.097782e-01	k: 12391	n:60000
STK35   60000 perm   13 sec   (4607 perm/sec)   p_kst 2.065167e-01   p_cons 1.010000e-02   p_joint 1.151833e-01

Joint ci ratio: 3.012263e-02	ci left: 1.918574e-01	ci right 1.977393e-01	k: 13635	n:70000
Cons ci ratio: 1.475248e-01	ci left: 9.248613e-03	ci right 1.073529e-02	k: 698	n:70000
KS ci ratio: 2.909805e-02	ci left: 2.028812e-01	ci right 2.088860e-01	k: 14411	n:70000
STK35   70000 perm   16 sec   (4497 perm/sec)   p_kst 2.058714e-01   p_cons 9.971429e-03   p_joint 1.947857e-01

Joint ci ratio: 3.114779e-02	ci left: 1.626823e-01	ci right 1.678420e-01	k: 13220	n:80000
Cons ci ratio: 1.382469e-01	ci left: 9.261725e-03	ci right 1.064916e-02	k: 795	n:80000
KS ci ratio: 2.712324e-02	ci left: 2.042218e-01	ci right 2.098495e-01	k: 16562	n:80000
STK35   80000 perm   18 sec   (4376 perm/sec)   p_kst 2.070250e-01   p_cons 9.937500e-03   p_joint 1.652500e-01

Joint ci ratio: 2.405454e-02	ci left: 2.250963e-01	ci right 2.305879e-01	k: 20505	n:90000
Cons ci ratio: 1.297927e-01	ci left: 9.381736e-03	ci right 1.069458e-02	k: 902	n:90000
KS ci ratio: 2.552229e-02	ci left: 2.050205e-01	ci right 2.103317e-01	k: 18690	n:90000
STK35   90000 perm   21 sec   (4292 perm/sec)   p_kst 2.076667e-01   p_cons 1.002222e-02   p_joint 2.278333e-01

Joint ci ratio: 2.238996e-02	ci left: 2.319764e-01	ci right 2.372390e-01	k: 23460	n:100000
Cons ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
KS ci ratio: 2.420211e-02	ci left: 2.052987e-01	ci right 2.103382e-01	k: 20781	n:100000
STK35   100000 perm   24 sec   (4215 perm/sec)   p_kst 2.078100e-01   p_cons 1.043000e-02   p_joint 2.346000e-01

Joint ci ratio: 1.949228e-02	ci left: 2.661998e-01	ci right 2.714488e-01	k: 29570	n:110000
Cons ci ratio: 1.146862e-01	ci left: 9.906030e-03	ci right 1.111999e-02	k: 1155	n:110000
KS ci ratio: 2.307148e-02	ci left: 2.054779e-01	ci right 2.102830e-01	k: 22866	n:110000
STK35   110000 perm   27 sec   (4142 perm/sec)   p_kst 2.078727e-01   p_cons 1.050000e-02   p_joint 2.688182e-01

Joint ci ratio: 1.883698e-02	ci left: 2.626790e-01	ci right 2.676824e-01	k: 31821	n:120000
Cons ci ratio: 1.101614e-01	ci left: 9.866122e-03	ci right 1.102439e-02	k: 1252	n:120000
KS ci ratio: 2.208917e-02	ci left: 2.055820e-01	ci right 2.101821e-01	k: 24945	n:120000
STK35   120000 perm   29 sec   (4070 perm/sec)   p_kst 2.078750e-01   p_cons 1.043333e-02   p_joint 2.651750e-01

Joint ci ratio: 1.873650e-02	ci left: 2.495266e-01	ci right 2.542537e-01	k: 32745	n:130000
Cons ci ratio: 1.067743e-01	ci left: 9.713322e-03	ci right 1.081638e-02	k: 1333	n:130000
KS ci ratio: 2.122003e-02	ci left: 2.057121e-01	ci right 2.101317e-01	k: 27029	n:130000
STK35   130000 perm   33 sec   (3998 perm/sec)   p_kst 2.079154e-01   p_cons 1.025385e-02   p_joint 2.518846e-01

Joint ci ratio: 1.807033e-02	ci left: 2.492929e-01	ci right 2.538459e-01	k: 35219	n:140000
Cons ci ratio: 1.020544e-01	ci left: 9.896063e-03	ci right 1.096722e-02	k: 1459	n:140000
KS ci ratio: 2.046954e-02	ci left: 2.054495e-01	ci right 2.097055e-01	k: 29060	n:140000
STK35   140000 perm   36 sec   (3930 perm/sec)   p_kst 2.075714e-01   p_cons 1.042143e-02   p_joint 2.515643e-01

Joint ci ratio: 1.789213e-02	ci left: 2.402530e-01	ci right 2.445970e-01	k: 36363	n:150000
Cons ci ratio: 9.879471e-02	ci left: 9.873244e-03	ci right 1.090581e-02	k: 1557	n:150000
KS ci ratio: 1.980829e-02	ci left: 2.049786e-01	ci right 2.090861e-01	k: 31054	n:150000
STK35   150000 perm   39 sec   (3863 perm/sec)   p_kst 2.070267e-01   p_cons 1.038000e-02   p_joint 2.424200e-01

Outputting figure to mutsig2_images.part000000000168/STK35.2_1617_150000_0.20703_0.01038_0.24242.png
                gene_name: STK35
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
STK38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
STK38   10000 perm   2 sec   (6510 perm/sec)   p_kst 3.700000e-01   p_cons 1.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK38.2_1450_10000_0.37_0.1541_1.png
                gene_name: STK38
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
STOML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
Cons ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
KS ci ratio: 3.667305e-02	ci left: 5.233633e-01	ci right 5.430173e-01	k: 5332	n:10000
STOML2   10000 perm   2 sec   (6438 perm/sec)   p_kst 5.332000e-01   p_cons 4.137000e-01   p_joint 7.915000e-01

Outputting figure to mutsig2_images.part000000000168/STOML2.2_1111_10000_0.5332_0.4137_0.7915.png
                gene_name: STOML2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 88 percent done.
STRADB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
Cons ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
KS ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
STRADB   10000 perm   2 sec   (6620 perm/sec)   p_kst 2.319000e-01   p_cons 2.215000e-01   p_joint 1.478000e-01

Outputting figure to mutsig2_images.part000000000168/STRADB.2_1301_10000_0.2319_0.2215_0.1478.png
                gene_name: STRADB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 90 percent done.
STRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
STRAP   10000 perm   2 sec   (6436 perm/sec)   p_kst 2.072000e-01   p_cons 5.905000e-01   p_joint 2.290000e-01

Outputting figure to mutsig2_images.part000000000168/STRAP.2_1093_10000_0.2072_0.5905_0.229.png
                gene_name: STRAP
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 92 percent done.
STRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
KS ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
STRN3   10000 perm   2 sec   (5622 perm/sec)   p_kst 5.108000e-01   p_cons 4.050000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000168/STRN3.2_2466_10000_0.5108_0.405_0.7968.png
                gene_name: STRN3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 93 percent done.
STT3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
KS ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
STT3B   10000 perm   2 sec   (5538 perm/sec)   p_kst 4.073000e-01   p_cons 4.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STT3B.2_2543_10000_0.4073_0.4764_1.png
                gene_name: STT3B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
STX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
STX12   10000 perm   2 sec   (6539 perm/sec)   p_kst 2.542000e-01   p_cons 1.286000e-01   p_joint 4.281000e-01

Joint ci ratio: 6.030159e-03	ci left: 9.518806e-01	ci right 9.576863e-01	k: 19097	n:20000
Cons ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
KS ci ratio: 4.805445e-02	ci left: 2.436138e-01	ci right 2.556591e-01	k: 4992	n:20000
STX12   20000 perm   4 sec   (5710 perm/sec)   p_kst 2.496000e-01   p_cons 1.310000e-01   p_joint 9.548500e-01

Outputting figure to mutsig2_images.part000000000168/STX12.2_867_20000_0.2496_0.131_0.95485.png
                gene_name: STX12
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 97 percent done.
STX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
Cons ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
KS ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
STX18   10000 perm   2 sec   (6539 perm/sec)   p_kst 6.262000e-01   p_cons 7.910000e-02   p_joint 8.960000e-02

Joint ci ratio: 3.434060e-02	ci left: 3.876674e-01	ci right 4.012633e-01	k: 7889	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 2.142163e-02	ci left: 6.193014e-01	ci right 6.327620e-01	k: 12521	n:20000
STX18   20000 perm   4 sec   (5694 perm/sec)   p_kst 6.260500e-01   p_cons 5.655000e-02   p_joint 3.944500e-01

Joint ci ratio: 3.007609e-02	ci left: 3.560604e-01	ci right 3.669664e-01	k: 10845	n:30000
Cons ci ratio: 9.171215e-02	ci left: 5.476155e-02	ci right 6.005790e-02	k: 1721	n:30000
KS ci ratio: 1.756887e-02	ci left: 6.184569e-01	ci right 6.294524e-01	k: 18719	n:30000
STX18   30000 perm   6 sec   (5354 perm/sec)   p_kst 6.239667e-01   p_cons 5.736667e-02   p_joint 3.615000e-01

Outputting figure to mutsig2_images.part000000000168/STX18.2_1052_30000_0.62397_0.057367_0.3615.png
                gene_name: STX18
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 98 percent done.
STX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
KS ci ratio: 2.928267e-02	ci left: 6.323123e-01	ci right 6.512050e-01	k: 6418	n:10000
STX1B   10000 perm   1 sec   (6673 perm/sec)   p_kst 6.418000e-01   p_cons 7.874000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STX1B.2_907_10000_0.6418_0.7874_1.png
                gene_name: STX1B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000168
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 168 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1429>
Subject: Job 4422589: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1429>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000169> was used as the working directory.
Started at Wed Oct 24 18:08:52 2012
Results reported at Wed Oct 24 18:22:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000169.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000169.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 169  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000169.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1003.42 sec.
    Max Memory :      5395 MB
    Max Swap   :      7935 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
169
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 169
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 169: processing genes 15200 - 15289
Calculating significance of each gene.
Using projection method.
15200	STX5	1
15201	STX6	1
15202	STX7	4.380665e-01
In gene STX8 the following bins exceed PROBCAP:
    LUAD-05-4434-TP	categ 6	N = 699     n = 1	mu =   3.68e-07
15203	STX8	1.463301e-01
15204	STXBP1	6.411551e-01
15205	STXBP2	1
15206	STXBP3	8.977050e-01
15207	STXBP4	4.622819e-01
15208	STXBP5	6.273202e-01
15209	STXBP5L	6.922945e-04
15210	STXBP6	5.765924e-01
15211	STYK1	8.089375e-01
15212	STYX	1
15213	STYXL1	1
15214	SUB1	1
15215	SUCLA2	1
15216	SUCLG1	5.699396e-01
15217	SUCLG2	9.126787e-01
15218	SUCNR1	8.741283e-01
15219	SUDS3	8.107585e-01
15220	SUFU	1
15221	SUGT1	6.845143e-01
15222	SULF1	5.512171e-01
15223	SULF2	3.204808e-01
15224	SULT1A1	1
15225	SULT1A2	8.449466e-01
15226	SULT1B1	3.653565e-04
15227	SULT1C2	3.406267e-01
15228	SULT1C3	5.339766e-02
15229	SULT1C4	1
15230	SULT1E1	5.975789e-01
15231	SULT2A1	1.972650e-01
15232	SULT2B1	7.906856e-01
15233	SULT4A1	1.177039e-01
15234	SULT6B1	1.058886e-01
15235	SUMF1	5.159625e-01
15236	SUMF2	4.788191e-01
15237	SUMO1	1.192448e-01
15238	SUMO2	1
15239	SUMO3	2.324857e-01
15240	SUMO4	1
15241	SUN1	5.943187e-01
15242	SUN2	9.737779e-01
15243	SUN3	5.509661e-01
15244	SUN5	2.839556e-01
15245	SUOX	3.739514e-01
15246	SUPT16H	1
15247	SUPT3H	8.921303e-01
15248	SUPT4H1	1
15249	SUPT5H	8.414044e-01
15250	SUPT6H	9.989246e-01
15251	SUPT7L	8.026266e-01
15252	SUPV3L1	1
15253	SURF1	1
15254	SURF2	1
15255	SURF4	2.412713e-01
15256	SURF6	6.305851e-01
15257	SUSD1	6.494968e-01
15258	SUSD2	9.545999e-01
15259	SUSD3	7.513279e-01
15260	SUSD4	9.045709e-01
15261	SUSD5	1
15262	SUV39H1	5.747156e-01
15263	SUV39H2	3.615570e-01
15264	SUV420H1	1
15265	SUV420H2	1
15266	SUZ12	9.476763e-01
15267	SV2A	1
15268	SV2B	1
15269	SV2C	5.482174e-03
15270	SVEP1	1.000000e+00
15271	SVIL	9.999967e-01
15272	SVIP	1
15273	SVOP	1.062955e-03
15274	SVOPL	2.179855e-01
15275	SWAP70	1
15276	SYAP1	6.211512e-01
15277	SYBU	6.243730e-01
15278	SYCE1	1.618043e-01
15279	SYCE2	2.280392e-01
15280	SYCN	1
15281	SYCP1	2.718266e-02
15282	SYCP2	9.826315e-01
15283	SYCP2L	4.768641e-01
15284	SYCP3	4.801992e-02
15285	SYDE1	9.529110e-01
15286	SYDE2	9.896994e-01
15287	SYF2	1.901760e-01
15288	SYK	9.642848e-01
15289	SYMPK	1
Done

Running MutSig 2:
Scatter job 169: processing genes 15200 - 15289
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SVEP1
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
SVEP1   10000 perm   5 sec   (1975 perm/sec)   p_kst 5.931000e-01   p_cons 2.299000e-01   p_joint 4.413000e-01

Outputting figure to mutsig2_images.part000000000169/SVEP1.39_10908_10000_0.5931_0.2299_0.4413.png
                gene_name: SVEP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
STXBP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
Cons ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
KS ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
STXBP5L   10000 perm   3 sec   (3786 perm/sec)   p_kst 2.152000e-01   p_cons 1.377000e-01   p_joint 1.447000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP5L.19_3669_10000_0.2152_0.1377_0.1447.png
                gene_name: STXBP5L
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 4 percent done.
SVIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
SVIL   10000 perm   3 sec   (3184 perm/sec)   p_kst 7.300000e-03   p_cons 4.404000e-01   p_joint 3.640000e-02

Joint ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
Cons ci ratio: 3.083093e-02	ci left: 4.400427e-01	ci right 4.538727e-01	k: 8939	n:20000
KS ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
SVIL   20000 perm   7 sec   (2929 perm/sec)   p_kst 7.600000e-03   p_cons 4.469500e-01   p_joint 1.565000e-02

Joint ci ratio: 2.172740e-01	ci left: 9.566664e-03	ci right 1.192952e-02	k: 321	n:30000
Cons ci ratio: 2.518001e-02	ci left: 4.411962e-01	ci right 4.524808e-01	k: 13405	n:30000
KS ci ratio: 2.735157e-01	ci left: 5.870334e-03	ci right 7.760411e-03	k: 203	n:30000
SVIL   30000 perm   11 sec   (2827 perm/sec)   p_kst 6.766667e-03   p_cons 4.468333e-01   p_joint 1.070000e-02

Joint ci ratio: 1.935541e-01	ci left: 9.167106e-03	ci right 1.115497e-02	k: 405	n:40000
Cons ci ratio: 2.168850e-02	ci left: 4.446414e-01	ci right 4.544159e-01	k: 17981	n:40000
KS ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
SVIL   40000 perm   14 sec   (2764 perm/sec)   p_kst 6.575000e-03   p_cons 4.495250e-01   p_joint 1.012500e-02

Joint ci ratio: 1.428346e-01	ci left: 1.377912e-02	ci right 1.591775e-02	k: 741	n:50000
Cons ci ratio: 1.938269e-02	ci left: 4.455724e-01	ci right 4.543134e-01	k: 22497	n:50000
KS ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
SVIL   50000 perm   18 sec   (2717 perm/sec)   p_kst 6.440000e-03   p_cons 4.499400e-01   p_joint 1.482000e-02

Joint ci ratio: 1.466594e-01	ci left: 1.090311e-02	ci right 1.264459e-02	k: 705	n:60000
Cons ci ratio: 1.788069e-02	ci left: 4.407682e-01	ci right 4.487372e-01	k: 26685	n:60000
KS ci ratio: 1.938854e-01	ci left: 6.110446e-03	ci right 7.437938e-03	k: 405	n:60000
SVIL   60000 perm   22 sec   (2677 perm/sec)   p_kst 6.750000e-03   p_cons 4.447500e-01   p_joint 1.175000e-02

Joint ci ratio: 1.436319e-01	ci left: 9.771883e-03	ci right 1.129767e-02	k: 736	n:70000
Cons ci ratio: 1.653069e-02	ci left: 4.417704e-01	ci right 4.491484e-01	k: 31182	n:70000
KS ci ratio: 1.777485e-01	ci left: 6.286488e-03	ci right 7.526345e-03	k: 482	n:70000
SVIL   70000 perm   27 sec   (2639 perm/sec)   p_kst 6.885714e-03   p_cons 4.454571e-01   p_joint 1.051429e-02

Joint ci ratio: 1.149121e-01	ci left: 1.351299e-02	ci right 1.517251e-02	k: 1146	n:80000
Cons ci ratio: 1.546410e-02	ci left: 4.419767e-01	ci right 4.488772e-01	k: 35634	n:80000
KS ci ratio: 1.670321e-01	ci left: 6.266177e-03	ci right 7.420022e-03	k: 546	n:80000
SVIL   80000 perm   31 sec   (2600 perm/sec)   p_kst 6.825000e-03   p_cons 4.454250e-01   p_joint 1.432500e-02

Joint ci ratio: 1.202654e-01	ci left: 1.096456e-02	ci right 1.237828e-02	k: 1049	n:90000
Cons ci ratio: 1.457030e-02	ci left: 4.424934e-01	ci right 4.489990e-01	k: 40117	n:90000
KS ci ratio: 1.594981e-01	ci left: 6.134737e-03	ci right 7.208542e-03	k: 599	n:90000
SVIL   90000 perm   35 sec   (2560 perm/sec)   p_kst 6.655556e-03   p_cons 4.457444e-01   p_joint 1.165556e-02

Joint ci ratio: 1.201631e-01	ci left: 9.896875e-03	ci right 1.117175e-02	k: 1052	n:100000
Cons ci ratio: 1.383871e-02	ci left: 4.420863e-01	ci right 4.482568e-01	k: 44517	n:100000
KS ci ratio: 1.539707e-01	ci left: 5.943963e-03	ci right 6.944988e-03	k: 643	n:100000
SVIL   100000 perm   40 sec   (2528 perm/sec)   p_kst 6.430000e-03   p_cons 4.451700e-01   p_joint 1.052000e-02

Joint ci ratio: 9.931961e-02	ci left: 1.326964e-02	ci right 1.466525e-02	k: 1535	n:110000
Cons ci ratio: 1.317984e-02	ci left: 4.427869e-01	ci right 4.486705e-01	k: 49030	n:110000
KS ci ratio: 1.479020e-01	ci left: 5.875959e-03	ci right 6.823078e-03	k: 697	n:110000
SVIL   110000 perm   44 sec   (2495 perm/sec)   p_kst 6.336364e-03   p_cons 4.457273e-01   p_joint 1.395455e-02

Joint ci ratio: 9.793512e-02	ci left: 1.252935e-02	ci right 1.382767e-02	k: 1580	n:120000
Cons ci ratio: 1.261817e-02	ci left: 4.429349e-01	ci right 4.485677e-01	k: 53490	n:120000
KS ci ratio: 1.407205e-01	ci left: 5.972694e-03	ci right 6.884739e-03	k: 770	n:120000
SVIL   120000 perm   49 sec   (2467 perm/sec)   p_kst 6.416667e-03   p_cons 4.457500e-01   p_joint 1.316667e-02

Joint ci ratio: 1.047692e-01	ci left: 1.009535e-02	ci right 1.121894e-02	k: 1384	n:130000
Cons ci ratio: 1.211873e-02	ci left: 4.432261e-01	ci right 4.486378e-01	k: 57971	n:130000
KS ci ratio: 1.352203e-01	ci left: 5.988577e-03	ci right 6.864428e-03	k: 834	n:130000
SVIL   130000 perm   53 sec   (2437 perm/sec)   p_kst 6.415385e-03   p_cons 4.459308e-01   p_joint 1.064615e-02

Joint ci ratio: 1.022670e-01	ci left: 9.854290e-03	ci right 1.092328e-02	k: 1453	n:140000
Cons ci ratio: 1.169384e-02	ci left: 4.426514e-01	ci right 4.478652e-01	k: 62336	n:140000
KS ci ratio: 1.313517e-01	ci left: 5.906039e-03	ci right 6.743176e-03	k: 884	n:140000
SVIL   140000 perm   58 sec   (2411 perm/sec)   p_kst 6.314286e-03   p_cons 4.452571e-01   p_joint 1.037857e-02

Joint ci ratio: 1.015647e-01	ci left: 9.333641e-03	ci right 1.033878e-02	k: 1474	n:150000
Cons ci ratio: 1.128325e-02	ci left: 4.433556e-01	ci right 4.483931e-01	k: 66881	n:150000
KS ci ratio: 1.275913e-01	ci left: 5.854183e-03	ci right 6.658415e-03	k: 937	n:150000
SVIL   150000 perm   63 sec   (2386 perm/sec)   p_kst 6.246667e-03   p_cons 4.458733e-01   p_joint 9.826667e-03

Joint ci ratio: 1.032335e-01	ci left: 8.469955e-03	ci right 9.397970e-03	k: 1428	n:160000
Cons ci ratio: 1.093461e-02	ci left: 4.430001e-01	ci right 4.478769e-01	k: 71270	n:160000
KS ci ratio: 1.238850e-01	ci left: 5.833338e-03	ci right 6.609718e-03	k: 994	n:160000
SVIL   160000 perm   68 sec   (2360 perm/sec)   p_kst 6.212500e-03   p_cons 4.454375e-01   p_joint 8.925000e-03

Joint ci ratio: 8.218450e-02	ci left: 1.266284e-02	ci right 1.375385e-02	k: 2244	n:170000
Cons ci ratio: 1.021835e-02	ci left: 4.616271e-01	ci right 4.663742e-01	k: 78880	n:170000
KS ci ratio: 1.199118e-01	ci left: 5.872309e-03	ci right 6.627032e-03	k: 1061	n:170000
SVIL   170000 perm   73 sec   (2336 perm/sec)   p_kst 6.241176e-03   p_cons 4.640000e-01   p_joint 1.320000e-02

Joint ci ratio: 8.022990e-02	ci left: 1.256347e-02	ci right 1.361897e-02	k: 2355	n:180000
Cons ci ratio: 9.925800e-03	ci left: 4.619272e-01	ci right 4.665406e-01	k: 83562	n:180000
KS ci ratio: 1.168196e-01	ci left: 5.853357e-03	ci right 6.584905e-03	k: 1118	n:180000
SVIL   180000 perm   78 sec   (2308 perm/sec)   p_kst 6.211111e-03   p_cons 4.642333e-01   p_joint 1.308333e-02

Joint ci ratio: 8.222386e-02	ci left: 1.133475e-02	ci right 1.231181e-02	k: 2245	n:190000
Cons ci ratio: 9.668364e-03	ci left: 4.616135e-01	ci right 4.661034e-01	k: 88133	n:190000
KS ci ratio: 1.132784e-01	ci left: 5.908226e-03	ci right 6.622753e-03	k: 1189	n:190000
SVIL   190000 perm   83 sec   (2286 perm/sec)   p_kst 6.257895e-03   p_cons 4.638579e-01   p_joint 1.181579e-02

Joint ci ratio: 7.433157e-02	ci left: 1.320493e-02	ci right 1.422924e-02	k: 2742	n:200000
Cons ci ratio: 9.421152e-03	ci left: 4.617974e-01	ci right 4.661736e-01	k: 92797	n:200000
KS ci ratio: 1.096913e-01	ci left: 5.996817e-03	ci right 6.697607e-03	k: 1268	n:200000
SVIL   200000 perm   88 sec   (2265 perm/sec)   p_kst 6.340000e-03   p_cons 4.639850e-01   p_joint 1.371000e-02

Joint ci ratio: 7.244017e-02	ci left: 1.325394e-02	ci right 1.425479e-02	k: 2887	n:210000
Cons ci ratio: 9.188110e-03	ci left: 4.621746e-01	ci right 4.664454e-01	k: 97505	n:210000
KS ci ratio: 1.067037e-01	ci left: 6.044841e-03	ci right 6.730796e-03	k: 1340	n:210000
SVIL   210000 perm   94 sec   (2242 perm/sec)   p_kst 6.380952e-03   p_cons 4.643095e-01   p_joint 1.374762e-02

Joint ci ratio: 7.089979e-02	ci left: 1.321840e-02	ci right 1.419447e-02	k: 3014	n:220000
Cons ci ratio: 8.986721e-03	ci left: 4.616780e-01	ci right 4.658502e-01	k: 102028	n:220000
KS ci ratio: 1.043199e-01	ci left: 6.044456e-03	ci right 6.714104e-03	k: 1402	n:220000
SVIL   220000 perm   99 sec   (2217 perm/sec)   p_kst 6.372727e-03   p_cons 4.637636e-01   p_joint 1.370000e-02

Joint ci ratio: 7.042582e-02	ci left: 1.282298e-02	ci right 1.376326e-02	k: 3056	n:230000
Cons ci ratio: 8.781559e-03	ci left: 4.621558e-01	ci right 4.662364e-01	k: 106765	n:230000
KS ci ratio: 1.023353e-01	ci left: 6.014600e-03	ci right 6.667500e-03	k: 1457	n:230000
SVIL   230000 perm   105 sec   (2194 perm/sec)   p_kst 6.334783e-03   p_cons 4.641957e-01   p_joint 1.328696e-02

Joint ci ratio: 6.942895e-02	ci left: 1.265300e-02	ci right 1.356715e-02	k: 3145	n:240000
Cons ci ratio: 8.600552e-03	ci left: 4.619740e-01	ci right 4.659685e-01	k: 111353	n:240000
KS ci ratio: 1.003265e-01	ci left: 6.003593e-03	ci right 6.641751e-03	k: 1516	n:240000
SVIL   240000 perm   110 sec   (2172 perm/sec)   p_kst 6.316667e-03   p_cons 4.639708e-01   p_joint 1.310417e-02

Joint ci ratio: 6.369531e-02	ci left: 1.444841e-02	ci right 1.540289e-02	k: 3730	n:250000
Cons ci ratio: 8.422839e-03	ci left: 4.622475e-01	ci right 4.661613e-01	k: 116051	n:250000
KS ci ratio: 9.397389e-02	ci left: 6.587052e-03	ci right 7.240458e-03	k: 1727	n:250000
SVIL   250000 perm   116 sec   (2151 perm/sec)   p_kst 6.908000e-03   p_cons 4.642040e-01   p_joint 1.492000e-02

Outputting figure to mutsig2_images.part000000000169/SVIL.12_6785_250000_0.006908_0.4642_0.01492.png
                gene_name: SVIL
               theta_stop: 0.094 
                    nperm: 250000 
                     p_ks: 0.0069 
        ci_ks_bounds_left: 0.0066 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 6 percent done.
SV2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
Cons ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
KS ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
SV2C   10000 perm   2 sec   (4225 perm/sec)   p_kst 6.261000e-01   p_cons 3.042000e-01   p_joint 8.396000e-01

Outputting figure to mutsig2_images.part000000000169/SV2C.11_2232_10000_0.6261_0.3042_0.8396.png
                gene_name: SV2C
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 8 percent done.
STXBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
Cons ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
KS ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
STXBP5   10000 perm   2 sec   (4058 perm/sec)   p_kst 4.607000e-01   p_cons 2.543000e-01   p_joint 5.505000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP5.10_3568_10000_0.4607_0.2543_0.5505.png
                gene_name: STXBP5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 10 percent done.
SULF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
SULF2   10000 perm   2 sec   (4385 perm/sec)   p_kst 4.370000e-02   p_cons 5.083000e-01   p_joint 1.820000e-01

Joint ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
Cons ci ratio: 2.711065e-02	ci left: 5.040960e-01	ci right 5.180008e-01	k: 10221	n:20000
KS ci ratio: 1.306830e-01	ci left: 4.023021e-02	ci right 4.590360e-02	k: 860	n:20000
SULF2   20000 perm   5 sec   (4011 perm/sec)   p_kst 4.300000e-02   p_cons 5.110500e-01   p_joint 1.239000e-01

Joint ci ratio: 6.816089e-02	ci left: 9.590525e-02	ci right 1.027059e-01	k: 2978	n:30000
Cons ci ratio: 2.238044e-02	ci left: 4.998921e-01	ci right 5.112401e-01	k: 15167	n:30000
KS ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
SULF2   30000 perm   8 sec   (3857 perm/sec)   p_kst 4.286667e-02   p_cons 5.055667e-01   p_joint 9.926667e-02

Joint ci ratio: 6.223795e-02	ci left: 8.740998e-02	ci right 9.304967e-02	k: 3608	n:40000
Cons ci ratio: 1.969159e-02	ci left: 4.927380e-01	ci right 5.025624e-01	k: 19906	n:40000
KS ci ratio: 9.215654e-02	ci left: 4.127725e-02	ci right 4.528940e-02	k: 1730	n:40000
SULF2   40000 perm   11 sec   (3763 perm/sec)   p_kst 4.325000e-02   p_cons 4.976500e-01   p_joint 9.020000e-02

Outputting figure to mutsig2_images.part000000000169/SULF2.10_2693_40000_0.04325_0.49765_0.0902.png
                gene_name: SULF2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 12 percent done.
SYCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
Cons ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
SYCP1   10000 perm   3 sec   (3980 perm/sec)   p_kst 4.691000e-01   p_cons 5.372000e-01   p_joint 5.853000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP1.10_3055_10000_0.4691_0.5372_0.5853.png
                gene_name: SYCP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 14 percent done.
SUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
KS ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
SUN3   10000 perm   2 sec   (5039 perm/sec)   p_kst 7.281000e-01   p_cons 1.284000e-01   p_joint 4.614000e-01

Joint ci ratio: 4.169441e-02	ci left: 3.000642e-01	ci right 3.128921e-01	k: 6129	n:20000
Cons ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
KS ci ratio: 1.666911e-02	ci left: 7.282203e-01	ci right 7.405115e-01	k: 14688	n:20000
SUN3   20000 perm   4 sec   (4494 perm/sec)   p_kst 7.344000e-01   p_cons 1.220000e-01   p_joint 3.064500e-01

Outputting figure to mutsig2_images.part000000000169/SUN3.9_1114_20000_0.7344_0.122_0.30645.png
                gene_name: SUN3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 16 percent done.
SULF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
Cons ci ratio: 3.415440e-02	ci left: 5.586236e-01	ci right 5.781366e-01	k: 5684	n:10000
KS ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
SULF1   10000 perm   2 sec   (4637 perm/sec)   p_kst 1.562000e-01   p_cons 5.684000e-01   p_joint 2.333000e-01

Outputting figure to mutsig2_images.part000000000169/SULF1.8_2692_10000_0.1562_0.5684_0.2333.png
                gene_name: SULF1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
SULT1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
SULT1B1   10000 perm   2 sec   (4478 perm/sec)   p_kst 5.270000e-01   p_cons 7.190000e-01   p_joint 7.933000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1B1.8_919_10000_0.527_0.719_0.7933.png
                gene_name: SULT1B1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
SUN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
Cons ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
KS ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
SUN1   10000 perm   2 sec   (4180 perm/sec)   p_kst 3.047000e-01   p_cons 2.410000e-02   p_joint 3.780000e-02

Joint ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
Cons ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
KS ci ratio: 4.158677e-02	ci left: 3.011577e-01	ci right 3.139983e-01	k: 6151	n:20000
SUN1   20000 perm   5 sec   (3841 perm/sec)   p_kst 3.075500e-01   p_cons 2.335000e-02   p_joint 4.080000e-02

Joint ci ratio: 1.112110e-01	ci left: 3.755099e-02	ci right 4.200537e-02	k: 1192	n:30000
Cons ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
KS ci ratio: 3.402470e-02	ci left: 3.014842e-01	ci right 3.119532e-01	k: 9201	n:30000
SUN1   30000 perm   8 sec   (3707 perm/sec)   p_kst 3.067000e-01   p_cons 2.553333e-02   p_joint 3.973333e-02

Joint ci ratio: 7.898830e-02	ci left: 5.570447e-02	ci right 6.030996e-02	k: 2319	n:40000
Cons ci ratio: 1.199620e-01	ci left: 2.443822e-02	ci right 2.758110e-02	k: 1039	n:40000
KS ci ratio: 2.943742e-02	ci left: 3.026060e-01	ci right 3.116721e-01	k: 12285	n:40000
SUN1   40000 perm   11 sec   (3578 perm/sec)   p_kst 3.071250e-01   p_cons 2.597500e-02   p_joint 5.797500e-02

Joint ci ratio: 7.934786e-02	ci left: 4.469034e-02	ci right 4.840253e-02	k: 2326	n:50000
Cons ci ratio: 1.051178e-01	ci left: 2.563579e-02	ci right 2.849947e-02	k: 1352	n:50000
KS ci ratio: 2.634264e-02	ci left: 3.028786e-01	ci right 3.109838e-01	k: 15346	n:50000
SUN1   50000 perm   14 sec   (3498 perm/sec)   p_kst 3.069200e-01   p_cons 2.704000e-02   p_joint 4.652000e-02

Joint ci ratio: 8.195023e-02	ci left: 3.522597e-02	ci right 3.825239e-02	k: 2203	n:60000
Cons ci ratio: 9.856697e-02	ci left: 2.441597e-02	ci right 2.696353e-02	k: 1540	n:60000
KS ci ratio: 2.399140e-02	ci left: 3.042239e-01	ci right 3.116280e-01	k: 18475	n:60000
SUN1   60000 perm   17 sec   (3440 perm/sec)   p_kst 3.079167e-01   p_cons 2.566667e-02   p_joint 3.671667e-02

Outputting figure to mutsig2_images.part000000000169/SUN1.8_2617_60000_0.30792_0.025667_0.036717.png
                gene_name: SUN1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 22 percent done.
SV2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
KS ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
SV2B   10000 perm   2 sec   (4920 perm/sec)   p_kst 8.887000e-01   p_cons 5.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SV2B.8_2100_10000_0.8887_0.5352_1.png
                gene_name: SV2B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
SUPT6H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
Cons ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
KS ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
SUPT6H   10000 perm   3 sec   (3719 perm/sec)   p_kst 1.284000e-01   p_cons 5.470000e-02   p_joint 2.160000e-02

Joint ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
Cons ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
KS ci ratio: 7.132741e-02	ci left: 1.265005e-01	ci right 1.359070e-01	k: 2623	n:20000
SUPT6H   20000 perm   6 sec   (3365 perm/sec)   p_kst 1.311500e-01   p_cons 5.510000e-02   p_joint 2.930000e-02

Joint ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
Cons ci ratio: 9.082027e-02	ci left: 5.580527e-02	ci right 6.114731e-02	k: 1753	n:30000
KS ci ratio: 5.785883e-02	ci left: 1.288472e-01	ci right 1.365574e-01	k: 3980	n:30000
SUPT6H   30000 perm   9 sec   (3229 perm/sec)   p_kst 1.326667e-01   p_cons 5.843333e-02   p_joint 3.780000e-02

Joint ci ratio: 9.533818e-02	ci left: 3.861352e-02	ci right 4.250354e-02	k: 1621	n:40000
Cons ci ratio: 7.855785e-02	ci left: 5.629334e-02	ci right 6.092100e-02	k: 2343	n:40000
KS ci ratio: 5.027128e-02	ci left: 1.286230e-01	ci right 1.352806e-01	k: 5277	n:40000
SUPT6H   40000 perm   13 sec   (3099 perm/sec)   p_kst 1.319250e-01   p_cons 5.857500e-02   p_joint 4.052500e-02

Outputting figure to mutsig2_images.part000000000169/SUPT6H.7_5325_40000_0.13192_0.058575_0.040525.png
                gene_name: SUPT6H
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 25 percent done.
SVOP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
Cons ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
KS ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
SVOP   10000 perm   2 sec   (5339 perm/sec)   p_kst 5.823000e-01   p_cons 6.978000e-01   p_joint 8.572000e-01

Outputting figure to mutsig2_images.part000000000169/SVOP.7_951_10000_0.5823_0.6978_0.8572.png
                gene_name: SVOP
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 27 percent done.
SYCP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
SYCP2L   10000 perm   2 sec   (4837 perm/sec)   p_kst 3.953000e-01   p_cons 1.100000e-02   p_joint 9.680000e-02

Joint ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
Cons ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
KS ci ratio: 3.441259e-02	ci left: 3.866705e-01	ci right 4.002604e-01	k: 7869	n:20000
SYCP2L   20000 perm   5 sec   (4333 perm/sec)   p_kst 3.934500e-01   p_cons 1.200000e-02   p_joint 5.655000e-02

Joint ci ratio: 8.638190e-02	ci left: 6.145202e-02	ci right 6.703274e-02	k: 1926	n:30000
Cons ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
KS ci ratio: 2.835443e-02	ci left: 3.836105e-01	ci right 3.946776e-01	k: 11674	n:30000
SYCP2L   30000 perm   7 sec   (4136 perm/sec)   p_kst 3.891333e-01   p_cons 1.283333e-02   p_joint 6.420000e-02

Joint ci ratio: 7.470567e-02	ci left: 6.198912e-02	ci right 6.682436e-02	k: 2575	n:40000
Cons ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
KS ci ratio: 2.460175e-02	ci left: 3.834698e-01	ci right 3.930464e-01	k: 15530	n:40000
SYCP2L   40000 perm   10 sec   (4012 perm/sec)   p_kst 3.882500e-01   p_cons 1.252500e-02   p_joint 6.437500e-02

Joint ci ratio: 7.145063e-02	ci left: 5.474765e-02	ci right 5.882400e-02	k: 2838	n:50000
Cons ci ratio: 1.563227e-01	ci left: 1.144840e-02	ci right 1.340881e-02	k: 620	n:50000
KS ci ratio: 2.190266e-02	ci left: 3.861803e-01	ci right 3.947524e-01	k: 19523	n:50000
SYCP2L   50000 perm   13 sec   (3918 perm/sec)   p_kst 3.904600e-01   p_cons 1.240000e-02   p_joint 5.676000e-02

Joint ci ratio: 6.928363e-02	ci left: 4.889245e-02	ci right 5.241784e-02	k: 3038	n:60000
Cons ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
KS ci ratio: 1.995570e-02	ci left: 3.874751e-01	ci right 3.953021e-01	k: 23483	n:60000
SYCP2L   60000 perm   16 sec   (3836 perm/sec)   p_kst 3.913833e-01   p_cons 1.203333e-02   p_joint 5.063333e-02

Joint ci ratio: 6.422538e-02	ci left: 4.890343e-02	ci right 5.216253e-02	k: 3536	n:70000
Cons ci ratio: 1.333970e-01	ci left: 1.137227e-02	ci right 1.301140e-02	k: 852	n:70000
KS ci ratio: 1.845878e-02	ci left: 3.881954e-01	ci right 3.954421e-01	k: 27427	n:70000
SYCP2L   70000 perm   19 sec   (3767 perm/sec)   p_kst 3.918143e-01   p_cons 1.217143e-02   p_joint 5.051429e-02

Joint ci ratio: 6.230316e-02	ci left: 4.567910e-02	ci right 4.862885e-02	k: 3771	n:80000
Cons ci ratio: 1.241934e-01	ci left: 1.153558e-02	ci right 1.307509e-02	k: 983	n:80000
KS ci ratio: 1.727987e-02	ci left: 3.880656e-01	ci right 3.948423e-01	k: 31316	n:80000
SYCP2L   80000 perm   22 sec   (3703 perm/sec)   p_kst 3.914500e-01   p_cons 1.228750e-02   p_joint 4.713750e-02

Joint ci ratio: 5.806467e-02	ci left: 4.679873e-02	ci right 4.960826e-02	k: 4337	n:90000
Cons ci ratio: 1.171443e-01	ci left: 1.156852e-02	ci right 1.301873e-02	k: 1105	n:90000
KS ci ratio: 1.630364e-02	ci left: 3.879098e-01	ci right 3.942972e-01	k: 35199	n:90000
SYCP2L   90000 perm   25 sec   (3645 perm/sec)   p_kst 3.911000e-01   p_cons 1.227778e-02   p_joint 4.818889e-02

Joint ci ratio: 5.776063e-02	ci left: 4.275680e-02	ci right 4.530974e-02	k: 4402	n:100000
Cons ci ratio: 1.113574e-01	ci left: 1.155795e-02	ci right 1.293056e-02	k: 1223	n:100000
KS ci ratio: 1.547059e-02	ci left: 3.879638e-01	ci right 3.940226e-01	k: 39099	n:100000
SYCP2L   100000 perm   28 sec   (3580 perm/sec)   p_kst 3.909900e-01   p_cons 1.223000e-02   p_joint 4.402000e-02

Joint ci ratio: 5.322130e-02	ci left: 4.574775e-02	ci right 4.825802e-02	k: 5169	n:110000
Cons ci ratio: 1.060317e-01	ci left: 1.162157e-02	ci right 1.293160e-02	k: 1349	n:110000
KS ci ratio: 1.468160e-02	ci left: 3.903390e-01	ci right 3.961212e-01	k: 43255	n:110000
SYCP2L   110000 perm   31 sec   (3520 perm/sec)   p_kst 3.932273e-01   p_cons 1.226364e-02   p_joint 4.699091e-02

Joint ci ratio: 5.386075e-02	ci left: 4.113522e-02	ci right 4.342030e-02	k: 5072	n:120000
Cons ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
KS ci ratio: 1.405689e-02	ci left: 3.904514e-01	ci right 3.959871e-01	k: 47186	n:120000
SYCP2L   120000 perm   35 sec   (3455 perm/sec)   p_kst 3.932167e-01   p_cons 1.222500e-02   p_joint 4.226667e-02

Joint ci ratio: 4.824408e-02	ci left: 4.716358e-02	ci right 4.950277e-02	k: 6282	n:130000
Cons ci ratio: 9.751818e-02	ci left: 1.167786e-02	ci right 1.288250e-02	k: 1595	n:130000
KS ci ratio: 1.351223e-02	ci left: 3.903205e-01	ci right 3.956381e-01	k: 51087	n:130000
SYCP2L   130000 perm   38 sec   (3398 perm/sec)   p_kst 3.929769e-01   p_cons 1.226923e-02   p_joint 4.832308e-02

Outputting figure to mutsig2_images.part000000000169/SYCP2L.7_2555_130000_0.39298_0.012269_0.048323.png
                gene_name: SYCP2L
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 29 percent done.
SYMPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.058183e-02	ci left: 6.120101e-01	ci right 6.311190e-01	k: 6216	n:10000
Cons ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
KS ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
SYMPK   10000 perm   2 sec   (4461 perm/sec)   p_kst 3.265000e-01   p_cons 2.681000e-01   p_joint 6.216000e-01

Outputting figure to mutsig2_images.part000000000169/SYMPK.7_3929_10000_0.3265_0.2681_0.6216.png
                gene_name: SYMPK
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 31 percent done.
SUOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
Cons ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
KS ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
SUOX   10000 perm   2 sec   (5721 perm/sec)   p_kst 3.592000e-01   p_cons 6.010000e-01   p_joint 4.566000e-01

Outputting figure to mutsig2_images.part000000000169/SUOX.5_1650_10000_0.3592_0.601_0.4566.png
                gene_name: SUOX
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 33 percent done.
SUPT5H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
Cons ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
KS ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
SUPT5H   10000 perm   2 sec   (4449 perm/sec)   p_kst 1.465000e-01   p_cons 1.756000e-01   p_joint 2.374000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT5H.5_3380_10000_0.1465_0.1756_0.2374.png
                gene_name: SUPT5H
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 35 percent done.
SUSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
Cons ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
SUSD1   10000 perm   2 sec   (5086 perm/sec)   p_kst 1.955000e-01   p_cons 7.886000e-01   p_joint 4.738000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD1.5_2312_10000_0.1955_0.7886_0.4738.png
                gene_name: SUSD1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 37 percent done.
SUV420H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
Cons ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
SUV420H1   10000 perm   2 sec   (4925 perm/sec)   p_kst 3.320000e-01   p_cons 1.542000e-01   p_joint 2.414000e-01

Outputting figure to mutsig2_images.part000000000169/SUV420H1.5_2706_10000_0.332_0.1542_0.2414.png
                gene_name: SUV420H1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 39 percent done.
SV2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
Cons ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
KS ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
SV2A   10000 perm   2 sec   (5129 perm/sec)   p_kst 5.642000e-01   p_cons 5.463000e-01   p_joint 7.680000e-01

Outputting figure to mutsig2_images.part000000000169/SV2A.5_2277_10000_0.5642_0.5463_0.768.png
                gene_name: SV2A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 41 percent done.
SYBU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
Cons ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
SYBU   10000 perm   2 sec   (5208 perm/sec)   p_kst 4.021000e-01   p_cons 6.241000e-01   p_joint 5.345000e-01

Outputting figure to mutsig2_images.part000000000169/SYBU.5_2035_10000_0.4021_0.6241_0.5345.png
                gene_name: SYBU
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 43 percent done.
STXBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.000404e-02	ci left: 7.853299e-01	ci right 8.012989e-01	k: 7934	n:10000
Cons ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KS ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
STXBP1   10000 perm   2 sec   (5268 perm/sec)   p_kst 9.404000e-01   p_cons 4.950000e-02   p_joint 7.934000e-01

Joint ci ratio: 2.556851e-02	ci left: 5.333125e-01	ci right 5.471758e-01	k: 10805	n:20000
Cons ci ratio: 1.212672e-01	ci left: 4.663162e-02	ci right 5.270016e-02	k: 992	n:20000
KS ci ratio: 7.079351e-03	ci left: 9.353887e-01	ci right 9.420830e-01	k: 18776	n:20000
STXBP1   20000 perm   4 sec   (4809 perm/sec)   p_kst 9.388000e-01   p_cons 4.960000e-02   p_joint 5.402500e-01

Joint ci ratio: 1.525944e-02	ci left: 6.821868e-01	ci right 6.927102e-01	k: 20624	n:30000
Cons ci ratio: 9.966803e-02	ci left: 4.658437e-02	ci right 5.150343e-02	k: 1470	n:30000
KS ci ratio: 5.756179e-03	ci left: 9.365045e-01	ci right 9.419434e-01	k: 28178	n:30000
STXBP1   30000 perm   7 sec   (4613 perm/sec)   p_kst 9.392667e-01   p_cons 4.900000e-02   p_joint 6.874667e-01

Outputting figure to mutsig2_images.part000000000169/STXBP1.4_1975_30000_0.93927_0.049_0.68747.png
                gene_name: STXBP1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 45 percent done.
SULT1C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
SULT1C3   10000 perm   2 sec   (6267 perm/sec)   p_kst 1.455000e-01   p_cons 1.700000e-02   p_joint 4.240000e-02

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
KS ci ratio: 6.718554e-02	ci left: 1.405414e-01	ci right 1.503619e-01	k: 2908	n:20000
SULT1C3   20000 perm   4 sec   (5639 perm/sec)   p_kst 1.454000e-01   p_cons 1.610000e-02   p_joint 1.955000e-02

Joint ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
Cons ci ratio: 1.857145e-01	ci left: 1.327321e-02	ci right 1.602196e-02	k: 438	n:30000
KS ci ratio: 5.444523e-02	ci left: 1.433072e-01	ci right 1.513612e-01	k: 4419	n:30000
SULT1C3   30000 perm   6 sec   (5325 perm/sec)   p_kst 1.473000e-01   p_cons 1.460000e-02   p_joint 2.926667e-02

Joint ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
Cons ci ratio: 1.523797e-01	ci left: 1.503367e-02	ci right 1.753727e-02	k: 650	n:40000
KS ci ratio: 4.706837e-02	ci left: 1.442857e-01	ci right 1.512655e-01	k: 5910	n:40000
SULT1C3   40000 perm   8 sec   (5146 perm/sec)   p_kst 1.477500e-01   p_cons 1.625000e-02   p_joint 2.932500e-02

Joint ci ratio: 1.063357e-01	ci left: 2.505125e-02	ci right 2.788408e-02	k: 1322	n:50000
Cons ci ratio: 1.359325e-01	ci left: 1.524690e-02	ci right 1.748976e-02	k: 817	n:50000
KS ci ratio: 4.191889e-02	ci left: 1.457306e-01	ci right 1.519902e-01	k: 7442	n:50000
SULT1C3   50000 perm   10 sec   (4983 perm/sec)   p_kst 1.488400e-01   p_cons 1.634000e-02   p_joint 2.644000e-02

Joint ci ratio: 9.970165e-02	ci left: 2.386301e-02	ci right 2.638321e-02	k: 1506	n:60000
Cons ci ratio: 1.197357e-01	ci left: 1.649821e-02	ci right 1.861550e-02	k: 1052	n:60000
KS ci ratio: 3.825550e-02	ci left: 1.460768e-01	ci right 1.517906e-01	k: 8935	n:60000
SULT1C3   60000 perm   12 sec   (4852 perm/sec)   p_kst 1.489167e-01   p_cons 1.753333e-02   p_joint 2.510000e-02

Joint ci ratio: 8.874951e-02	ci left: 2.590962e-02	ci right 2.832979e-02	k: 1897	n:70000
Cons ci ratio: 1.102389e-01	ci left: 1.676388e-02	ci right 1.873353e-02	k: 1241	n:70000
KS ci ratio: 3.610474e-02	ci left: 1.415202e-01	ci right 1.467379e-01	k: 10088	n:70000
SULT1C3   70000 perm   15 sec   (4744 perm/sec)   p_kst 1.441143e-01   p_cons 1.772857e-02   p_joint 2.710000e-02

Joint ci ratio: 7.173053e-02	ci left: 3.469513e-02	ci right 3.728866e-02	k: 2878	n:80000
Cons ci ratio: 1.023303e-01	ci left: 1.708997e-02	ci right 1.894522e-02	k: 1440	n:80000
KS ci ratio: 3.378367e-02	ci left: 1.416110e-01	ci right 1.464898e-01	k: 11523	n:80000
SULT1C3   80000 perm   17 sec   (4635 perm/sec)   p_kst 1.440375e-01   p_cons 1.800000e-02   p_joint 3.597500e-02

Joint ci ratio: 8.227850e-02	ci left: 2.358689e-02	ci right 2.562169e-02	k: 2213	n:90000
Cons ci ratio: 1.015079e-01	ci left: 1.547195e-02	ci right 1.713722e-02	k: 1466	n:90000
KS ci ratio: 3.184367e-02	ci left: 1.418115e-01	ci right 1.464114e-01	k: 12969	n:90000
SULT1C3   90000 perm   20 sec   (4532 perm/sec)   p_kst 1.441000e-01   p_cons 1.628889e-02   p_joint 2.458889e-02

Joint ci ratio: 8.644229e-02	ci left: 1.927826e-02	ci right 2.102973e-02	k: 2014	n:100000
Cons ci ratio: 9.588121e-02	ci left: 1.565115e-02	ci right 1.723707e-02	k: 1643	n:100000
KS ci ratio: 3.021951e-02	ci left: 1.418492e-01	ci right 1.462115e-01	k: 14402	n:100000
SULT1C3   100000 perm   23 sec   (4435 perm/sec)   p_kst 1.440200e-01   p_cons 1.643000e-02   p_joint 2.014000e-02

Outputting figure to mutsig2_images.part000000000169/SULT1C3.4_942_100000_0.14402_0.01643_0.02014.png
                gene_name: SULT1C3
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 47 percent done.
SUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.206560e-02	ci left: 4.548861e-01	ci right 4.745345e-01	k: 4647	n:10000
KS ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
SUSD4   10000 perm   2 sec   (5477 perm/sec)   p_kst 9.766000e-01   p_cons 4.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUSD4.4_1658_10000_0.9766_0.4647_1.png
                gene_name: SUSD4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
SVOPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
Cons ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
KS ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
SVOPL   10000 perm   2 sec   (5797 perm/sec)   p_kst 8.556000e-01   p_cons 1.215000e-01   p_joint 4.214000e-01

Joint ci ratio: 2.896106e-02	ci left: 4.711058e-01	ci right 4.850006e-01	k: 9561	n:20000
Cons ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
KS ci ratio: 1.165855e-02	ci left: 8.446715e-01	ci right 8.546266e-01	k: 16994	n:20000
SVOPL   20000 perm   4 sec   (5240 perm/sec)   p_kst 8.497000e-01   p_cons 1.226000e-01   p_joint 4.780500e-01

Outputting figure to mutsig2_images.part000000000169/SVOPL.4_1539_20000_0.8497_0.1226_0.47805.png
                gene_name: SVOPL
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 51 percent done.
SYCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
SYCE1   10000 perm   2 sec   (6588 perm/sec)   p_kst 2.601000e-01   p_cons 7.545000e-01   p_joint 4.802000e-01

Outputting figure to mutsig2_images.part000000000169/SYCE1.4_1151_10000_0.2601_0.7545_0.4802.png
                gene_name: SYCE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 53 percent done.
SYCP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.813473e-02	ci left: 5.038511e-01	ci right 5.235409e-01	k: 5137	n:10000
Cons ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
KS ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
SYCP3   10000 perm   2 sec   (5918 perm/sec)   p_kst 6.906000e-01   p_cons 2.301000e-01   p_joint 5.137000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP3.4_743_10000_0.6906_0.2301_0.5137.png
                gene_name: SYCP3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 55 percent done.
SYDE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
Cons ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
KS ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
SYDE2   10000 perm   2 sec   (4546 perm/sec)   p_kst 4.443000e-01   p_cons 8.820000e-02   p_joint 2.508000e-01

Joint ci ratio: 5.288579e-02	ci left: 2.097688e-01	ci right 2.212141e-01	k: 4309	n:20000
Cons ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
KS ci ratio: 3.094655e-02	ci left: 4.381958e-01	ci right 4.520202e-01	k: 8902	n:20000
SYDE2   20000 perm   5 sec   (4201 perm/sec)   p_kst 4.451000e-01   p_cons 7.950000e-02   p_joint 2.154500e-01

Outputting figure to mutsig2_images.part000000000169/SYDE2.4_3613_20000_0.4451_0.0795_0.21545.png
                gene_name: SYDE2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 57 percent done.
SYF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.078604e-02	ci left: 4.702649e-01	ci right 4.899467e-01	k: 4801	n:10000
Cons ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
KS ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
SYF2   10000 perm   2 sec   (6386 perm/sec)   p_kst 6.924000e-01   p_cons 2.780000e-02   p_joint 4.801000e-01

Joint ci ratio: 3.175814e-02	ci left: 4.254695e-01	ci right 4.392502e-01	k: 8647	n:20000
Cons ci ratio: 1.671903e-01	ci left: 2.450986e-02	ci right 2.902913e-02	k: 534	n:20000
KS ci ratio: 1.838782e-02	ci left: 6.879628e-01	ci right 7.007807e-01	k: 13888	n:20000
SYF2   20000 perm   4 sec   (5692 perm/sec)   p_kst 6.944000e-01   p_cons 2.670000e-02   p_joint 4.323500e-01

Joint ci ratio: 2.916825e-02	ci left: 3.702817e-01	ci right 3.812757e-01	k: 11273	n:30000
Cons ci ratio: 1.604815e-01	ci left: 1.793329e-02	ci right 2.109407e-02	k: 584	n:30000
KS ci ratio: 1.498427e-02	ci left: 6.899892e-01	ci right 7.004397e-01	k: 20857	n:30000
SYF2   30000 perm   6 sec   (5390 perm/sec)   p_kst 6.952333e-01   p_cons 1.946667e-02   p_joint 3.757667e-01

Joint ci ratio: 2.527793e-02	ci left: 3.707012e-01	ci right 3.802169e-01	k: 15018	n:40000
Cons ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
KS ci ratio: 1.293269e-02	ci left: 6.921434e-01	ci right 7.011780e-01	k: 27867	n:40000
SYF2   40000 perm   8 sec   (5213 perm/sec)   p_kst 6.966750e-01   p_cons 1.952500e-02   p_joint 3.754500e-01

Joint ci ratio: 2.266214e-02	ci left: 3.701154e-01	ci right 3.786192e-01	k: 18718	n:50000
Cons ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
KS ci ratio: 1.157874e-02	ci left: 6.922078e-01	ci right 7.002894e-01	k: 34813	n:50000
SYF2   50000 perm   10 sec   (5056 perm/sec)   p_kst 6.962600e-01   p_cons 1.948000e-02   p_joint 3.743600e-01

Joint ci ratio: 1.271892e-02	ci left: 6.089555e-01	ci right 6.167670e-01	k: 36772	n:60000
Cons ci ratio: 1.133797e-01	ci left: 1.842475e-02	ci right 2.065540e-02	k: 1171	n:60000
KS ci ratio: 1.055684e-02	ci left: 6.930877e-01	ci right 7.004600e-01	k: 41807	n:60000
SYF2   60000 perm   12 sec   (4929 perm/sec)   p_kst 6.967833e-01   p_cons 1.951667e-02   p_joint 6.128667e-01

Joint ci ratio: 1.094753e-02	ci left: 6.432890e-01	ci right 6.503845e-01	k: 45279	n:70000
Cons ci ratio: 1.048651e-01	ci left: 1.854415e-02	ci right 2.061023e-02	k: 1369	n:70000
KS ci ratio: 9.779311e-03	ci left: 6.931218e-01	ci right 6.999476e-01	k: 48758	n:70000
SYF2   70000 perm   15 sec   (4811 perm/sec)   p_kst 6.965429e-01   p_cons 1.955714e-02   p_joint 6.468429e-01

Joint ci ratio: 1.023473e-02	ci left: 6.437770e-01	ci right 6.504123e-01	k: 51768	n:80000
Cons ci ratio: 9.754458e-02	ci left: 1.882142e-02	ci right 2.076362e-02	k: 1582	n:80000
KS ci ratio: 9.141072e-03	ci left: 6.936517e-01	ci right 7.000340e-01	k: 55748	n:80000
SYF2   80000 perm   17 sec   (4697 perm/sec)   p_kst 6.968500e-01   p_cons 1.977500e-02   p_joint 6.471000e-01

Outputting figure to mutsig2_images.part000000000169/SYF2.4_760_80000_0.69685_0.019775_0.6471.png
                gene_name: SYF2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 59 percent done.
STX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 1.930025e-02	ci left: 7.969948e-01	ci right 8.126273e-01	k: 8049	n:10000
STX8   10000 perm   2 sec   (6473 perm/sec)   p_kst 8.049000e-01   p_cons 3.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/STX8.3_743_10000_0.8049_0.319_1.png
                gene_name: STX8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
STXBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
STXBP4   10000 perm   2 sec   (5670 perm/sec)   p_kst 1   p_cons 1.280000e-02   p_joint 7.210000e-02

Joint ci ratio: 1.064906e-01	ci left: 6.006147e-02	ci right 6.686612e-02	k: 1268	n:20000
Cons ci ratio: 2.581180e-01	ci left: 9.928283e-03	ci right 1.291630e-02	k: 227	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
STXBP4   20000 perm   4 sec   (5032 perm/sec)   p_kst 1   p_cons 1.135000e-02   p_joint 6.340000e-02

Joint ci ratio: 8.472587e-02	ci left: 6.377137e-02	ci right 6.944625e-02	k: 1997	n:30000
Cons ci ratio: 2.139407e-01	ci left: 9.882165e-03	ci right 1.228060e-02	k: 331	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
STXBP4   30000 perm   6 sec   (4814 perm/sec)   p_kst 1   p_cons 1.103333e-02   p_joint 6.656667e-02

Joint ci ratio: 9.661803e-02	ci left: 3.761217e-02	ci right 4.145504e-02	k: 1580	n:40000
Cons ci ratio: 2.036790e-01	ci left: 8.240160e-03	ci right 1.013212e-02	k: 366	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
STXBP4   40000 perm   9 sec   (4668 perm/sec)   p_kst 1   p_cons 9.150000e-03   p_joint 3.950000e-02

Joint ci ratio: 8.349700e-02	ci left: 4.045442e-02	ci right 4.399898e-02	k: 2110	n:50000
Cons ci ratio: 1.825282e-01	ci left: 8.305354e-03	ci right 9.992373e-03	k: 456	n:50000
KS ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
STXBP4   50000 perm   11 sec   (4536 perm/sec)   p_kst 1   p_cons 9.120000e-03   p_joint 4.220000e-02

Joint ci ratio: 8.255484e-02	ci left: 3.471955e-02	ci right 3.772552e-02	k: 2172	n:60000
Cons ci ratio: 1.684004e-01	ci left: 8.195939e-03	ci right 9.718795e-03	k: 536	n:60000
KS ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
STXBP4   60000 perm   14 sec   (4433 perm/sec)   p_kst 1   p_cons 8.933333e-03   p_joint 3.620000e-02

Joint ci ratio: 8.551568e-02	ci left: 2.789520e-02	ci right 3.040117e-02	k: 2039	n:70000
Cons ci ratio: 1.572437e-01	ci left: 8.107685e-03	ci right 9.504917e-03	k: 615	n:70000
KS ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
STXBP4   70000 perm   16 sec   (4328 perm/sec)   p_kst 1   p_cons 8.785714e-03   p_joint 2.912857e-02

Joint ci ratio: 7.737273e-02	ci left: 2.988337e-02	ci right 3.230080e-02	k: 2486	n:80000
Cons ci ratio: 1.474054e-01	ci left: 8.116259e-03	ci right 9.419740e-03	k: 700	n:80000
KS ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
STXBP4   80000 perm   19 sec   (4238 perm/sec)   p_kst 1   p_cons 8.750000e-03   p_joint 3.107500e-02

Joint ci ratio: 7.650410e-02	ci left: 2.725899e-02	ci right 2.943822e-02	k: 2550	n:90000
Cons ci ratio: 1.384119e-01	ci left: 8.221608e-03	ci right 9.454806e-03	k: 794	n:90000
KS ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
STXBP4   90000 perm   22 sec   (4146 perm/sec)   p_kst 1   p_cons 8.822222e-03   p_joint 2.833333e-02

Joint ci ratio: 6.769905e-02	ci left: 3.134068e-02	ci right 3.354655e-02	k: 3243	n:100000
Cons ci ratio: 1.318625e-01	ci left: 8.182061e-03	ci right 9.346701e-03	k: 875	n:100000
KS ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
STXBP4   100000 perm   25 sec   (4065 perm/sec)   p_kst 1   p_cons 8.750000e-03   p_joint 3.243000e-02

Joint ci ratio: 5.311896e-02	ci left: 4.591829e-02	ci right 4.843292e-02	k: 5188	n:110000
Cons ci ratio: 1.264294e-01	ci left: 8.115608e-03	ci right 9.219622e-03	k: 952	n:110000
KS ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
STXBP4   110000 perm   28 sec   (3986 perm/sec)   p_kst 1   p_cons 8.654545e-03   p_joint 4.716364e-02

Joint ci ratio: 4.860070e-02	ci left: 5.017382e-02	ci right 5.268125e-02	k: 6170	n:120000
Cons ci ratio: 1.213202e-01	ci left: 8.101467e-03	ci right 9.155820e-03	k: 1034	n:120000
KS ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
STXBP4   120000 perm   31 sec   (3913 perm/sec)   p_kst 1   p_cons 8.616667e-03   p_joint 5.141667e-02

Joint ci ratio: 4.874342e-02	ci left: 4.623595e-02	ci right 4.855352e-02	k: 6160	n:130000
Cons ci ratio: 1.168898e-01	ci left: 8.075323e-03	ci right 9.085242e-03	k: 1114	n:130000
KS ci ratio: 3.015338e-05	ci left: 9.999716e-01	ci right 1	k: 130000	n:130000
STXBP4   130000 perm   34 sec   (3839 perm/sec)   p_kst 1   p_cons 8.569231e-03   p_joint 4.738462e-02

Joint ci ratio: 4.721334e-02	ci left: 4.581952e-02	ci right 4.804215e-02	k: 6569	n:140000
Cons ci ratio: 1.130550e-01	ci left: 8.032689e-03	ci right 9.002118e-03	k: 1191	n:140000
KS ci ratio: 2.799960e-05	ci left: 9.999737e-01	ci right 1	k: 140000	n:140000
STXBP4   140000 perm   37 sec   (3768 perm/sec)   p_kst 1   p_cons 8.507143e-03   p_joint 4.692143e-02

Joint ci ratio: 4.171910e-02	ci left: 5.442584e-02	ci right 5.675138e-02	k: 8337	n:150000
Cons ci ratio: 1.087988e-01	ci left: 8.112958e-03	ci right 9.052852e-03	k: 1286	n:150000
KS ci ratio: 2.613298e-05	ci left: 9.999754e-01	ci right 1	k: 150000	n:150000
STXBP4   150000 perm   41 sec   (3703 perm/sec)   p_kst 1   p_cons 8.573333e-03   p_joint 5.558000e-02

Joint ci ratio: 3.993257e-02	ci left: 5.567078e-02	ci right 5.794531e-02	k: 9088	n:160000
Cons ci ratio: 1.053363e-01	ci left: 8.129009e-03	ci right 9.038933e-03	k: 1372	n:160000
KS ci ratio: 2.449969e-05	ci left: 9.999769e-01	ci right 1	k: 160000	n:160000
STXBP4   160000 perm   44 sec   (3642 perm/sec)   p_kst 1   p_cons 8.575000e-03   p_joint 5.680000e-02

Joint ci ratio: 3.996146e-02	ci left: 5.249908e-02	ci right 5.464559e-02	k: 9106	n:170000
Cons ci ratio: 1.025040e-01	ci left: 8.091993e-03	ci right 8.971950e-03	k: 1449	n:170000
KS ci ratio: 2.305855e-05	ci left: 9.999783e-01	ci right 1	k: 170000	n:170000
STXBP4   170000 perm   47 sec   (3583 perm/sec)   p_kst 1   p_cons 8.523529e-03   p_joint 5.356471e-02

Joint ci ratio: 3.865736e-02	ci left: 5.299331e-02	ci right 5.508775e-02	k: 9726	n:180000
Cons ci ratio: 1.001867e-01	ci left: 8.010623e-03	ci right 8.860879e-03	k: 1517	n:180000
KS ci ratio: 2.177754e-05	ci left: 9.999795e-01	ci right 1	k: 180000	n:180000
STXBP4   180000 perm   51 sec   (3526 perm/sec)   p_kst 1   p_cons 8.427778e-03   p_joint 5.403333e-02

Joint ci ratio: 3.636188e-02	ci left: 5.659304e-02	ci right 5.869417e-02	k: 10951	n:190000
Cons ci ratio: 9.795738e-02	ci left: 7.948290e-03	ci right 8.772079e-03	k: 1587	n:190000
KS ci ratio: 2.063136e-05	ci left: 9.999806e-01	ci right 1	k: 190000	n:190000
STXBP4   190000 perm   55 sec   (3470 perm/sec)   p_kst 1   p_cons 8.352632e-03   p_joint 5.763684e-02

Outputting figure to mutsig2_images.part000000000169/STXBP4.3_1726_190000_1_0.0083526_0.057637.png
                gene_name: STXBP4
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.0084 
      ci_cons_bounds_left: 0.0079 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.059 

Current progress: 63 percent done.
SULT2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
Cons ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
KS ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
SULT2A1   10000 perm   2 sec   (6473 perm/sec)   p_kst 3.326000e-01   p_cons 3.599000e-01   p_joint 3.625000e-01

Outputting figure to mutsig2_images.part000000000169/SULT2A1.3_882_10000_0.3326_0.3599_0.3625.png
                gene_name: SULT2A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 65 percent done.
SULT4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
Cons ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
SULT4A1   10000 perm   2 sec   (6411 perm/sec)   p_kst 9.034000e-01   p_cons 9.547000e-01   p_joint 9.539000e-01

Outputting figure to mutsig2_images.part000000000169/SULT4A1.3_883_10000_0.9034_0.9547_0.9539.png
                gene_name: SULT4A1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 67 percent done.
SULT6B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
Cons ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
KS ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
SULT6B1   10000 perm   2 sec   (6127 perm/sec)   p_kst 4.750000e-02   p_cons 5.952000e-01   p_joint 1.650000e-01

Joint ci ratio: 8.228827e-02	ci left: 9.769141e-02	ci right 1.061247e-01	k: 2037	n:20000
Cons ci ratio: 2.299330e-02	ci left: 5.855017e-01	ci right 5.991715e-01	k: 11847	n:20000
KS ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
SULT6B1   20000 perm   4 sec   (5512 perm/sec)   p_kst 4.720000e-02   p_cons 5.923500e-01   p_joint 1.018500e-01

Joint ci ratio: 6.329208e-02	ci left: 1.097671e-01	ci right 1.169746e-01	k: 3400	n:30000
Cons ci ratio: 1.889440e-02	ci left: 5.836745e-01	ci right 5.948415e-01	k: 17678	n:30000
KS ci ratio: 1.014203e-01	ci left: 4.502272e-02	ci right 4.986541e-02	k: 1422	n:30000
SULT6B1   30000 perm   6 sec   (5186 perm/sec)   p_kst 4.740000e-02   p_cons 5.892667e-01   p_joint 1.133333e-01

Joint ci ratio: 5.215472e-02	ci left: 1.205131e-01	ci right 1.269916e-01	k: 4949	n:40000
Cons ci ratio: 1.636966e-02	ci left: 5.842346e-01	ci right 5.939024e-01	k: 23563	n:40000
KS ci ratio: 8.796273e-02	ci left: 4.521565e-02	ci right 4.940039e-02	k: 1891	n:40000
SULT6B1   40000 perm   8 sec   (5014 perm/sec)   p_kst 4.727500e-02   p_cons 5.890750e-01   p_joint 1.237250e-01

Outputting figure to mutsig2_images.part000000000169/SULT6B1.3_826_40000_0.047275_0.58908_0.12373.png
                gene_name: SULT6B1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 69 percent done.
SUMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
Cons ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
KS ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
SUMF1   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.610000e-01   p_cons 5.044000e-01   p_joint 2.788000e-01

Outputting figure to mutsig2_images.part000000000169/SUMF1.3_1161_10000_0.161_0.5044_0.2788.png
                gene_name: SUMF1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 71 percent done.
SUMF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
Cons ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
KS ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
SUMF2   10000 perm   2 sec   (5861 perm/sec)   p_kst 1.397000e-01   p_cons 6.720000e-02   p_joint 2.143000e-01

Joint ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 6.973015e-02	ci left: 1.316715e-01	ci right 1.412345e-01	k: 2728	n:20000
SUMF2   20000 perm   4 sec   (5268 perm/sec)   p_kst 1.364000e-01   p_cons 7.280000e-02   p_joint 9.525000e-02

Outputting figure to mutsig2_images.part000000000169/SUMF2.3_1258_20000_0.1364_0.0728_0.09525.png
                gene_name: SUMF2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 73 percent done.
SUN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
Cons ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
KS ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
SUN5   10000 perm   2 sec   (5982 perm/sec)   p_kst 1.338000e-01   p_cons 3.143000e-01   p_joint 2.180000e-01

Outputting figure to mutsig2_images.part000000000169/SUN5.3_1192_10000_0.1338_0.3143_0.218.png
                gene_name: SUN5
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 75 percent done.
SURF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
Cons ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
KS ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
SURF6   10000 perm   2 sec   (5980 perm/sec)   p_kst 3.642000e-01   p_cons 3.699000e-01   p_joint 3.397000e-01

Outputting figure to mutsig2_images.part000000000169/SURF6.3_1106_10000_0.3642_0.3699_0.3397.png
                gene_name: SURF6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 76 percent done.
SUV39H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
Cons ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
KS ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
SUV39H2   10000 perm   2 sec   (5950 perm/sec)   p_kst 5.717000e-01   p_cons 1.794000e-01   p_joint 5.717000e-01

Outputting figure to mutsig2_images.part000000000169/SUV39H2.3_1069_10000_0.5717_0.1794_0.5717.png
                gene_name: SUV39H2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 78 percent done.
SYCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
Cons ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
SYCP2   10000 perm   2 sec   (4435 perm/sec)   p_kst 3.147000e-01   p_cons 1.980000e-01   p_joint 1.819000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP2.3_4765_10000_0.3147_0.198_0.1819.png
                gene_name: SYCP2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 80 percent done.
SYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
KS ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
SYK   10000 perm   2 sec   (5499 perm/sec)   p_kst 3.880000e-02   p_cons 3.306000e-01   p_joint 2.910000e-02

Joint ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
Cons ci ratio: 3.931346e-02	ci left: 3.254732e-01	ci right 3.385757e-01	k: 6640	n:20000
KS ci ratio: 1.372254e-01	ci left: 3.650420e-02	ci right 4.193082e-02	k: 783	n:20000
SYK   20000 perm   4 sec   (4957 perm/sec)   p_kst 3.915000e-02   p_cons 3.320000e-01   p_joint 1.429500e-01

Joint ci ratio: 6.591140e-02	ci left: 1.019798e-01	ci right 1.089635e-01	k: 3163	n:30000
Cons ci ratio: 3.199947e-02	ci left: 3.280651e-01	ci right 3.387672e-01	k: 10002	n:30000
KS ci ratio: 1.120946e-01	ci left: 3.696711e-02	ci right 4.138937e-02	k: 1174	n:30000
SYK   30000 perm   6 sec   (4737 perm/sec)   p_kst 3.913333e-02   p_cons 3.334000e-01   p_joint 1.054333e-01

Joint ci ratio: 7.710085e-02	ci left: 5.835491e-02	ci right 6.305911e-02	k: 2427	n:40000
Cons ci ratio: 2.761652e-02	ci left: 3.303244e-01	ci right 3.395996e-01	k: 13398	n:40000
KS ci ratio: 9.821357e-02	ci left: 3.641590e-02	ci right 4.020151e-02	k: 1531	n:40000
SYK   40000 perm   9 sec   (4590 perm/sec)   p_kst 3.827500e-02   p_cons 3.349500e-01   p_joint 6.067500e-02

Outputting figure to mutsig2_images.part000000000169/SYK.3_1960_40000_0.038275_0.33495_0.060675.png
                gene_name: SYK
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 82 percent done.
STX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
Cons ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
KS ci ratio: 7.778311e-03	ci left: 9.582750e-01	ci right 9.658527e-01	k: 9622	n:10000
STX7   10000 perm   1 sec   (6970 perm/sec)   p_kst 9.622000e-01   p_cons 3.734000e-01   p_joint 9.906000e-01

Outputting figure to mutsig2_images.part000000000169/STX7.2_822_10000_0.9622_0.3734_0.9906.png
                gene_name: STX7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
SUCLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
Cons ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
KS ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
SUCLG1   10000 perm   2 sec   (6444 perm/sec)   p_kst 5.444000e-01   p_cons 5.051000e-01   p_joint 8.330000e-01

Outputting figure to mutsig2_images.part000000000169/SUCLG1.2_1077_10000_0.5444_0.5051_0.833.png
                gene_name: SUCLG1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 86 percent done.
SUCLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
Cons ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
KS ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
SUCLG2   10000 perm   2 sec   (6117 perm/sec)   p_kst 8.259000e-01   p_cons 3.380000e-01   p_joint 6.081000e-01

Outputting figure to mutsig2_images.part000000000169/SUCLG2.2_1487_10000_0.8259_0.338_0.6081.png
                gene_name: SUCLG2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 88 percent done.
SULT1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
KS ci ratio: 1.427922e-02	ci left: 8.764362e-01	ci right 8.891399e-01	k: 8829	n:10000
SULT1C2   10000 perm   2 sec   (6381 perm/sec)   p_kst 8.829000e-01   p_cons 4.646000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SULT1C2.2_1018_10000_0.8829_0.4646_1.png
                gene_name: SULT1C2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SUMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
KS ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
SUMO1   10000 perm   1 sec   (7066 perm/sec)   p_kst 9.386000e-01   p_cons 3.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUMO1.2_326_10000_0.9386_0.3003_1.png
                gene_name: SUMO1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SURF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
Cons ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
KS ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
SURF4   10000 perm   2 sec   (6630 perm/sec)   p_kst 7.723000e-01   p_cons 1.841000e-01   p_joint 8.771000e-01

Outputting figure to mutsig2_images.part000000000169/SURF4.2_834_10000_0.7723_0.1841_0.8771.png
                gene_name: SURF4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 94 percent done.
SUSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
Cons ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
SUSD2   10000 perm   2 sec   (5395 perm/sec)   p_kst 5.094000e-01   p_cons 8.066000e-01   p_joint 7.656000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD2.2_2529_10000_0.5094_0.8066_0.7656.png
                gene_name: SUSD2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 96 percent done.
SUV39H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
SUV39H1   10000 perm   2 sec   (6552 perm/sec)   p_kst 4.835000e-01   p_cons 4.112000e-01   p_joint 5.027000e-01

Outputting figure to mutsig2_images.part000000000169/SUV39H1.2_1263_10000_0.4835_0.4112_0.5027.png
                gene_name: SUV39H1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 98 percent done.
SYCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
SYCE2   10000 perm   1 sec   (6677 perm/sec)   p_kst 1.298000e-01   p_cons 6.814000e-01   p_joint 3.517000e-01

Joint ci ratio: 4.341842e-02	ci left: 2.832205e-01	ci right 2.958408e-01	k: 5790	n:20000
Cons ci ratio: 1.984745e-02	ci left: 6.544417e-01	ci right 6.676114e-01	k: 13221	n:20000
KS ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
SYCE2   20000 perm   3 sec   (5913 perm/sec)   p_kst 1.313000e-01   p_cons 6.610500e-01   p_joint 2.895000e-01

Outputting figure to mutsig2_images.part000000000169/SYCE2.2_681_20000_0.1313_0.66105_0.2895.png
                gene_name: SYCE2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000169
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 169 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 4422594: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000170> was used as the working directory.
Started at Wed Oct 24 18:09:00 2012
Results reported at Wed Oct 24 22:12:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000170.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000170.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 170  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000170.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  15763.52 sec.
    Max Memory :      5416 MB
    Max Swap   :      7834 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
170
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 170
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 170: processing genes 15290 - 15380
Calculating significance of each gene.
Using projection method.
15290	SYN1	5.918881e-01
15291	SYN2	1
15292	SYN3	9.855544e-02
15293	SYNC	1
15294	SYNCRIP	6.159964e-01
15295	SYNE1	1
15296	SYNE2	1.000000e+00
15297	SYNGAP1	9.988006e-01
15298	SYNGR1	5.138288e-01
15299	SYNGR2	1
15300	SYNGR3	1
15301	SYNGR4	1
15302	SYNJ1	9.476081e-01
15303	SYNJ2	1
15304	SYNJ2BP	1
15305	SYNM	1
15306	SYNPO	1
15307	SYNPO2	3.895552e-01
15308	SYNPO2L	1
15309	SYNPR	1
15310	SYNRG	1
15311	SYP	1.983807e-01
15312	SYPL1	1
15313	SYPL2	1
15314	SYS1	1
15315	SYT1	3.026785e-01
15316	SYT10	3.516347e-01
15317	SYT11	1.482973e-01
15318	SYT12	6.152333e-01
15319	SYT13	1
15320	SYT14	7.249859e-01
15321	SYT15	1
15322	SYT16	1.836829e-02
15323	SYT17	8.871916e-01
15324	SYT2	7.881116e-01
15325	SYT3	6.122722e-01
15326	SYT4	1.588124e-05
15327	SYT5	4.976510e-01
15328	SYT6	3.242244e-01
15329	SYT7	8.667186e-01
15330	SYT8	8.971515e-01
15331	SYT9	5.683003e-01
15332	SYTL1	5.512037e-01
15333	SYTL2	9.998135e-01
15334	SYTL3	6.985250e-01
15335	SYTL4	4.655286e-02
15336	SYTL5	8.351256e-03
15337	SYVN1	9.913965e-01
15338	T	5.095986e-02
15339	TAAR1	8.661380e-02
15340	TAAR2	6.117513e-03
15341	TAAR5	7.030447e-03
15342	TAAR6	2.747073e-01
15343	TAAR8	1
15344	TAAR9	6.146148e-02
15345	TAB1	8.836543e-01
15346	TAB2	5.851699e-01
15347	TAB3	8.268339e-01
15348	TAC1	3.988946e-01
15349	TAC3	1
15350	TAC4	3.532931e-01
15351	TACC1	9.145073e-01
15352	TACC2	9.999999e-01
15353	TACC3	9.718647e-01
15354	TACO1	5.632384e-01
15355	TACR1	3.796310e-01
15356	TACR2	1
15357	TACR3	4.014451e-01
15358	TACSTD2	1
15359	TADA1	1
15360	TADA2A	5.864677e-01
15361	TADA2B	5.545223e-01
15362	TADA3	9.661508e-01
15363	TAF1	8.681512e-01
15364	TAF10	5.031935e-01
15365	TAF11	1
15366	TAF12	1
15367	TAF13	1
15368	TAF15	8.839964e-01
15369	TAF1A	5.400255e-01
15370	TAF1B	9.099810e-01
15371	TAF1C	1
15372	TAF1D	4.259861e-01
15373	TAF1L	7.175123e-01
15374	TAF2	9.763032e-01
15375	TAF3	5.776654e-01
15376	TAF4	8.160230e-01
15377	TAF4B	5.040984e-01
15378	TAF5	1
15379	TAF5L	4.508913e-01
15380	TAF6	8.994564e-01
Done

Running MutSig 2:
Scatter job 170: processing genes 15290 - 15380
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SYNE1
Processing conservation and coverage...
36% 73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
Cons ci ratio: 3.090770e-02	ci left: 6.069875e-01	ci right 6.261445e-01	k: 6166	n:10000
KS ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
SYNE1   10000 perm   10 sec   (1021 perm/sec)   p_kst 2.670000e-02   p_cons 6.166000e-01   p_joint 5.350000e-02

Joint ci ratio: 1.132152e-01	ci left: 5.333981e-02	ci right 5.978987e-02	k: 1130	n:20000
Cons ci ratio: 2.128233e-02	ci left: 6.223621e-01	ci right 6.358004e-01	k: 12582	n:20000
KS ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
SYNE1   20000 perm   22 sec   (890 perm/sec)   p_kst 2.580000e-02   p_cons 6.291000e-01   p_joint 5.650000e-02

Joint ci ratio: 8.874306e-02	ci left: 5.835035e-02	ci right 6.380170e-02	k: 1831	n:30000
Cons ci ratio: 1.739833e-02	ci left: 6.230366e-01	ci right 6.340051e-01	k: 18856	n:30000
KS ci ratio: 1.387023e-01	ci left: 2.413198e-02	ci right 2.776061e-02	k: 777	n:30000
SYNE1   30000 perm   32 sec   (938 perm/sec)   p_kst 2.590000e-02   p_cons 6.285333e-01   p_joint 6.103333e-02

Joint ci ratio: 8.050980e-02	ci left: 5.369303e-02	ci right 5.822171e-02	k: 2237	n:40000
Cons ci ratio: 1.505165e-02	ci left: 6.242693e-01	ci right 6.337620e-01	k: 25161	n:40000
KS ci ratio: 1.186794e-01	ci left: 2.497221e-02	ci right 2.814703e-02	k: 1061	n:40000
SYNE1   40000 perm   42 sec   (956 perm/sec)   p_kst 2.652500e-02   p_cons 6.290250e-01   p_joint 5.592500e-02

Joint ci ratio: 7.435492e-02	ci left: 5.069862e-02	ci right 5.463352e-02	k: 2632	n:50000
Cons ci ratio: 1.344840e-02	ci left: 6.252696e-01	ci right 6.337554e-01	k: 31476	n:50000
KS ci ratio: 1.065426e-01	ci left: 2.495385e-02	ci right 2.778150e-02	k: 1317	n:50000
SYNE1   50000 perm   52 sec   (969 perm/sec)   p_kst 2.634000e-02   p_cons 6.295200e-01   p_joint 5.264000e-02

Joint ci ratio: 6.284266e-02	ci left: 5.898298e-02	ci right 6.282629e-02	k: 3653	n:60000
Cons ci ratio: 1.230135e-02	ci left: 6.247027e-01	ci right 6.324516e-01	k: 37715	n:60000
KS ci ratio: 9.690174e-02	ci left: 2.526198e-02	ci right 2.785076e-02	k: 1592	n:60000
SYNE1   60000 perm   61 sec   (977 perm/sec)   p_kst 2.653333e-02   p_cons 6.285833e-01   p_joint 6.088333e-02

Outputting figure to mutsig2_images.part000000000170/SYNE1.55_27068_60000_0.026533_0.62858_0.060883.png
                gene_name: SYNE1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 2 percent done.
SYNE2
Processing conservation and coverage...
47% 94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
KS ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
SYNE2   10000 perm   7 sec   (1528 perm/sec)   p_kst 6.320000e-02   p_cons 5.989000e-01   p_joint 1.548000e-01

Joint ci ratio: 8.404411e-02	ci left: 9.396221e-02	ci right 1.022551e-01	k: 1961	n:20000
Cons ci ratio: 2.239358e-02	ci left: 5.982353e-01	ci right 6.118342e-01	k: 12101	n:20000
KS ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
SYNE2   20000 perm   14 sec   (1453 perm/sec)   p_kst 6.290000e-02   p_cons 6.050500e-01   p_joint 9.805000e-02

Joint ci ratio: 6.235503e-02	ci left: 1.127587e-01	ci right 1.200491e-01	k: 3491	n:30000
Cons ci ratio: 1.833373e-02	ci left: 5.982054e-01	ci right 6.093078e-01	k: 18113	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
SYNE2   30000 perm   21 sec   (1432 perm/sec)   p_kst 6.316667e-02   p_cons 6.037667e-01   p_joint 1.163667e-01

Outputting figure to mutsig2_images.part000000000170/SYNE2.28_21229_30000_0.063167_0.60377_0.11637.png
                gene_name: SYNE2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 3 percent done.
TAF1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
TAF1L   10000 perm   3 sec   (3290 perm/sec)   p_kst 7.463000e-01   p_cons 1.586000e-01   p_joint 4.196000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1L.25_5485_10000_0.7463_0.1586_0.4196.png
                gene_name: TAF1L
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 5 percent done.
SYT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
Cons ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
KS ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
SYT4   10000 perm   2 sec   (4877 perm/sec)   p_kst 9.348000e-01   p_cons 3.595000e-01   p_joint 8.302000e-01

Outputting figure to mutsig2_images.part000000000170/SYT4.15_1294_10000_0.9348_0.3595_0.8302.png
                gene_name: SYT4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 6 percent done.
TACC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
TACC2   10000 perm   3 sec   (2878 perm/sec)   p_kst 2.260000e-02   p_cons 4.890000e-02   p_joint 5.940000e-02

Joint ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
Cons ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
KS ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
TACC2   20000 perm   7 sec   (2683 perm/sec)   p_kst 2.240000e-02   p_cons 4.840000e-02   p_joint 2.120000e-02

Joint ci ratio: 3.006830e-01	ci left: 4.787072e-03	ci right 6.510790e-03	k: 168	n:30000
Cons ci ratio: 1.056600e-01	ci left: 4.154431e-02	ci right 4.621121e-02	k: 1315	n:30000
KS ci ratio: 1.478326e-01	ci left: 2.120485e-02	ci right 2.462174e-02	k: 686	n:30000
TACC2   30000 perm   12 sec   (2597 perm/sec)   p_kst 2.286667e-02   p_cons 4.383333e-02   p_joint 5.600000e-03

Joint ci ratio: 1.862743e-01	ci left: 9.929432e-03	ci right 1.199249e-02	k: 437	n:40000
Cons ci ratio: 9.226802e-02	ci left: 4.117946e-02	ci right 4.518720e-02	k: 1726	n:40000
KS ci ratio: 1.276003e-01	ci left: 2.157740e-02	ci right 2.454240e-02	k: 921	n:40000
TACC2   40000 perm   16 sec   (2537 perm/sec)   p_kst 2.302500e-02   p_cons 4.315000e-02   p_joint 1.092500e-02

Joint ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
Cons ci ratio: 8.264231e-02	ci left: 4.127770e-02	ci right 4.485560e-02	k: 2152	n:50000
KS ci ratio: 1.108040e-01	ci left: 2.306530e-02	ci right 2.579030e-02	k: 1220	n:50000
TACC2   50000 perm   20 sec   (2488 perm/sec)   p_kst 2.440000e-02   p_cons 4.304000e-02   p_joint 7.620000e-03

Joint ci ratio: 1.321637e-01	ci left: 1.349421e-02	ci right 1.541984e-02	k: 866	n:60000
Cons ci ratio: 7.363730e-02	ci left: 4.343683e-02	ci right 4.677402e-02	k: 2705	n:60000
KS ci ratio: 1.014056e-01	ci left: 2.306640e-02	ci right 2.554657e-02	k: 1457	n:60000
TACC2   60000 perm   25 sec   (2447 perm/sec)   p_kst 2.428333e-02   p_cons 4.508333e-02   p_joint 1.443333e-02

Joint ci ratio: 1.281037e-01	ci left: 1.235377e-02	ci right 1.405836e-02	k: 923	n:70000
Cons ci ratio: 6.815236e-02	ci left: 4.358847e-02	ci right 4.667795e-02	k: 3158	n:70000
KS ci ratio: 9.445414e-02	ci left: 2.287884e-02	ci right 2.516085e-02	k: 1680	n:70000
TACC2   70000 perm   29 sec   (2421 perm/sec)   p_kst 2.400000e-02   p_cons 4.511429e-02   p_joint 1.318571e-02

Joint ci ratio: 1.387762e-01	ci left: 9.189300e-03	ci right 1.057159e-02	k: 789	n:80000
Cons ci ratio: 6.363349e-02	ci left: 4.384457e-02	ci right 4.673852e-02	k: 3622	n:80000
KS ci ratio: 8.857001e-02	ci left: 2.284041e-02	ci right 2.496931e-02	k: 1911	n:80000
TACC2   80000 perm   33 sec   (2394 perm/sec)   p_kst 2.388750e-02   p_cons 4.527500e-02   p_joint 9.862500e-03

Joint ci ratio: 1.327963e-01	ci left: 8.951757e-03	ci right 1.023570e-02	k: 862	n:90000
Cons ci ratio: 5.986266e-02	ci left: 4.411475e-02	ci right 4.684798e-02	k: 4092	n:90000
KS ci ratio: 8.340540e-02	ci left: 2.295548e-02	ci right 2.496425e-02	k: 2155	n:90000
TACC2   90000 perm   38 sec   (2366 perm/sec)   p_kst 2.394444e-02   p_cons 4.546667e-02   p_joint 9.577778e-03

Joint ci ratio: 1.033581e-01	ci left: 1.344657e-02	ci right 1.492180e-02	k: 1417	n:100000
Cons ci ratio: 5.368937e-02	ci left: 4.924959e-02	ci right 5.197655e-02	k: 5060	n:100000
KS ci ratio: 7.940693e-02	ci left: 2.284449e-02	ci right 2.474327e-02	k: 2378	n:100000
TACC2   100000 perm   43 sec   (2342 perm/sec)   p_kst 2.378000e-02   p_cons 5.060000e-02   p_joint 1.417000e-02

Joint ci ratio: 1.004532e-01	ci left: 1.296817e-02	ci right 1.434856e-02	k: 1501	n:110000
Cons ci ratio: 5.108507e-02	ci left: 4.950965e-02	ci right 5.211410e-02	k: 5588	n:110000
KS ci ratio: 7.608318e-02	ci left: 2.266636e-02	ci right 2.446797e-02	k: 2591	n:110000
TACC2   110000 perm   47 sec   (2318 perm/sec)   p_kst 2.355455e-02   p_cons 5.080000e-02   p_joint 1.364545e-02

Joint ci ratio: 9.960840e-02	ci left: 1.210659e-02	ci right 1.338379e-02	k: 1528	n:120000
Cons ci ratio: 4.883474e-02	ci left: 4.971254e-02	ci right 5.220921e-02	k: 6114	n:120000
KS ci ratio: 7.294506e-02	ci left: 2.264209e-02	ci right 2.436438e-02	k: 2819	n:120000
TACC2   120000 perm   52 sec   (2294 perm/sec)   p_kst 2.349167e-02   p_cons 5.095000e-02   p_joint 1.273333e-02

Outputting figure to mutsig2_images.part000000000170/TACC2.14_9007_120000_0.023492_0.05095_0.012733.png
                gene_name: TACC2
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 8 percent done.
SYNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
Cons ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
KS ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
SYNPO2   10000 perm   2 sec   (4144 perm/sec)   p_kst 3.255000e-01   p_cons 6.161000e-01   p_joint 5.033000e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO2.12_3918_10000_0.3255_0.6161_0.5033.png
                gene_name: SYNPO2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 9 percent done.
SYT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
Cons ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
KS ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
SYT10   10000 perm   2 sec   (4754 perm/sec)   p_kst 8.364000e-01   p_cons 8.375000e-01   p_joint 8.887000e-01

Outputting figure to mutsig2_images.part000000000170/SYT10.11_1600_10000_0.8364_0.8375_0.8887.png
                gene_name: SYT10
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 11 percent done.
SYT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
Cons ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
SYT16   10000 perm   2 sec   (4756 perm/sec)   p_kst 5.501000e-01   p_cons 2.765000e-01   p_joint 4.894000e-01

Outputting figure to mutsig2_images.part000000000170/SYT16.10_1962_10000_0.5501_0.2765_0.4894.png
                gene_name: SYT16
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 12 percent done.
SYTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
Cons ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
SYTL4   10000 perm   2 sec   (5237 perm/sec)   p_kst 5.170000e-02   p_cons 3.141000e-01   p_joint 8.080000e-02

Joint ci ratio: 7.518557e-02	ci left: 1.151334e-01	ci right 1.241775e-01	k: 2392	n:20000
Cons ci ratio: 4.152827e-02	ci left: 3.017541e-01	ci right 3.146017e-01	k: 6163	n:20000
KS ci ratio: 1.197522e-01	ci left: 4.779719e-02	ci right 5.393423e-02	k: 1016	n:20000
SYTL4   20000 perm   4 sec   (4692 perm/sec)   p_kst 5.080000e-02   p_cons 3.081500e-01   p_joint 1.196000e-01

Joint ci ratio: 6.759549e-02	ci left: 9.738248e-02	ci right 1.042284e-01	k: 3023	n:30000
Cons ci ratio: 3.380727e-02	ci left: 3.042045e-01	ci right 3.146991e-01	k: 9283	n:30000
KS ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
SYTL4   30000 perm   7 sec   (4471 perm/sec)   p_kst 5.186667e-02   p_cons 3.094333e-01   p_joint 1.007667e-01

Outputting figure to mutsig2_images.part000000000170/SYTL4.10_2080_30000_0.051867_0.30943_0.10077.png
                gene_name: SYTL4
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 14 percent done.
SYTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
Cons ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
SYTL5   10000 perm   2 sec   (4936 perm/sec)   p_kst 3.993000e-01   p_cons 6.750000e-02   p_joint 2.018000e-01

Joint ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
Cons ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
KS ci ratio: 3.405835e-02	ci left: 3.916052e-01	ci right 4.052243e-01	k: 7968	n:20000
SYTL5   20000 perm   5 sec   (4417 perm/sec)   p_kst 3.984000e-01   p_cons 6.800000e-02   p_joint 1.134000e-01

Joint ci ratio: 5.413676e-02	ci left: 1.447243e-01	ci right 1.528105e-01	k: 4462	n:30000
Cons ci ratio: 8.405180e-02	ci left: 6.475169e-02	ci right 7.046573e-02	k: 2027	n:30000
KS ci ratio: 2.773800e-02	ci left: 3.940838e-01	ci right 4.052023e-01	k: 11989	n:30000
SYTL5   30000 perm   7 sec   (4225 perm/sec)   p_kst 3.996333e-01   p_cons 6.756667e-02   p_joint 1.487333e-01

Outputting figure to mutsig2_images.part000000000170/SYTL5.9_2327_30000_0.39963_0.067567_0.14873.png
                gene_name: SYTL5
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 16 percent done.
TAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
TAF1   10000 perm   3 sec   (3708 perm/sec)   p_kst 4.476000e-01   p_cons 5.237000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1.9_5834_10000_0.4476_0.5237_0.529.png
                gene_name: TAF1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 17 percent done.
TAAR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
Cons ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KS ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
TAAR5   10000 perm   2 sec   (5191 perm/sec)   p_kst 4.825000e-01   p_cons 3.028000e-01   p_joint 3.093000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR5.8_1018_10000_0.4825_0.3028_0.3093.png
                gene_name: TAAR5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 19 percent done.
TAAR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
TAAR6   10000 perm   2 sec   (5478 perm/sec)   p_kst 9.679000e-01   p_cons 6.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAAR6.8_1040_10000_0.9679_0.6238_1.png
                gene_name: TAAR6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
TACR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
KS ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
TACR3   10000 perm   2 sec   (5384 perm/sec)   p_kst 4.362000e-01   p_cons 5.142000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000170/TACR3.8_1418_10000_0.4362_0.5142_0.4643.png
                gene_name: TACR3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 22 percent done.
SYT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
Cons ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KS ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
SYT6   10000 perm   2 sec   (5379 perm/sec)   p_kst 3.631000e-01   p_cons 7.914000e-01   p_joint 5.225000e-01

Outputting figure to mutsig2_images.part000000000170/SYT6.7_1302_10000_0.3631_0.7914_0.5225.png
                gene_name: SYT6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 23 percent done.
TAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TAF3   10000 perm   2 sec   (4773 perm/sec)   p_kst 1   p_cons 1.612000e-01   p_joint 5.860000e-01

Outputting figure to mutsig2_images.part000000000170/TAF3.7_2817_10000_1_0.1612_0.586.png
                gene_name: TAF3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 25 percent done.
SYN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
Cons ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
KS ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
SYN3   10000 perm   2 sec   (5251 perm/sec)   p_kst 2.390000e-01   p_cons 7.300000e-02   p_joint 1.066000e-01

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
KS ci ratio: 5.009438e-02	ci left: 2.284934e-01	ci right 2.402839e-01	k: 4687	n:20000
SYN3   20000 perm   4 sec   (4647 perm/sec)   p_kst 2.343500e-01   p_cons 7.915000e-02   p_joint 1.167500e-01

Outputting figure to mutsig2_images.part000000000170/SYN3.6_1795_20000_0.23435_0.07915_0.11675.png
                gene_name: SYN3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
SYNGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
Cons ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
KS ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
SYNGAP1   10000 perm   2 sec   (4538 perm/sec)   p_kst 7.038000e-01   p_cons 5.502000e-01   p_joint 8.217000e-01

Outputting figure to mutsig2_images.part000000000170/SYNGAP1.6_4108_10000_0.7038_0.5502_0.8217.png
                gene_name: SYNGAP1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 28 percent done.
SYT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
SYT11   10000 perm   2 sec   (5389 perm/sec)   p_kst 3.534000e-01   p_cons 1.627000e-01   p_joint 3.696000e-01

Outputting figure to mutsig2_images.part000000000170/SYT11.6_1312_10000_0.3534_0.1627_0.3696.png
                gene_name: SYT11
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 30 percent done.
SYT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
SYT13   10000 perm   2 sec   (5776 perm/sec)   p_kst 5.136000e-01   p_cons 1.400000e-03   p_joint 8.400000e-03

Joint ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
Cons ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
KS ci ratio: 2.700508e-02	ci left: 5.060464e-01	ci right 5.199499e-01	k: 10260	n:20000
SYT13   20000 perm   4 sec   (5070 perm/sec)   p_kst 5.130000e-01   p_cons 1.450000e-03   p_joint 5.100000e-03

Joint ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
Cons ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
KS ci ratio: 2.157397e-02	ci left: 5.182298e-01	ci right 5.295656e-01	k: 15717	n:30000
SYT13   30000 perm   6 sec   (4795 perm/sec)   p_kst 5.239000e-01   p_cons 1.233333e-03   p_joint 3.266667e-03

Joint ci ratio: 1.797485e-01	ci left: 1.069316e-02	ci right 1.282861e-02	k: 469	n:40000
Cons ci ratio: 5.330776e-01	ci left: 9.926686e-04	ci right 1.732779e-03	k: 53	n:40000
KS ci ratio: 1.866604e-02	ci left: 5.194668e-01	ci right 5.292797e-01	k: 20975	n:40000
SYT13   40000 perm   9 sec   (4591 perm/sec)   p_kst 5.243750e-01   p_cons 1.325000e-03   p_joint 1.172500e-02

Joint ci ratio: 1.159179e-01	ci left: 2.106240e-02	ci right 2.367346e-02	k: 1117	n:50000
Cons ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
KS ci ratio: 1.669269e-02	ci left: 5.200713e-01	ci right 5.288458e-01	k: 26223	n:50000
SYT13   50000 perm   11 sec   (4445 perm/sec)   p_kst 5.244600e-01   p_cons 1.720000e-03   p_joint 2.234000e-02

Joint ci ratio: 1.226737e-01	ci left: 1.570590e-02	ci right 1.777456e-02	k: 1003	n:60000
Cons ci ratio: 4.152074e-01	ci left: 1.176471e-03	ci right 1.806667e-03	k: 88	n:60000
KS ci ratio: 1.494787e-02	ci left: 5.300486e-01	ci right 5.380481e-01	k: 32043	n:60000
SYT13   60000 perm   14 sec   (4332 perm/sec)   p_kst 5.340500e-01   p_cons 1.466667e-03   p_joint 1.671667e-02

Joint ci ratio: 1.210611e-01	ci left: 1.386305e-02	ci right 1.566322e-02	k: 1032	n:70000
Cons ci ratio: 3.956997e-01	ci left: 1.123860e-03	ci right 1.690196e-03	k: 97	n:70000
KS ci ratio: 1.382538e-02	ci left: 5.308392e-01	ci right 5.382436e-01	k: 37418	n:70000
SYT13   70000 perm   16 sec   (4245 perm/sec)   p_kst 5.345429e-01   p_cons 1.385714e-03   p_joint 1.474286e-02

Joint ci ratio: 1.145580e-01	ci left: 1.359801e-02	ci right 1.526248e-02	k: 1153	n:80000
Cons ci ratio: 3.734980e-01	ci left: 1.118884e-03	ci right 1.643349e-03	k: 109	n:80000
KS ci ratio: 1.294076e-02	ci left: 5.307609e-01	ci right 5.376866e-01	k: 42738	n:80000
SYT13   80000 perm   19 sec   (4173 perm/sec)   p_kst 5.342250e-01   p_cons 1.362500e-03   p_joint 1.441250e-02

Joint ci ratio: 1.219813e-01	ci left: 1.065200e-02	ci right 1.204643e-02	k: 1020	n:90000
Cons ci ratio: 3.606266e-01	ci left: 1.075250e-03	ci right 1.557815e-03	k: 117	n:90000
KS ci ratio: 1.220293e-02	ci left: 5.308677e-01	ci right 5.373967e-01	k: 48072	n:90000
SYT13   90000 perm   22 sec   (4094 perm/sec)   p_kst 5.341333e-01   p_cons 1.300000e-03   p_joint 1.133333e-02

Joint ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
Cons ci ratio: 3.422659e-01	ci left: 1.086257e-03	ci right 1.543456e-03	k: 130	n:100000
KS ci ratio: 1.161268e-02	ci left: 5.294917e-01	ci right 5.356864e-01	k: 53259	n:100000
SYT13   100000 perm   25 sec   (4026 perm/sec)   p_kst 5.325900e-01   p_cons 1.300000e-03   p_joint 1.038000e-02

Joint ci ratio: 1.154455e-01	ci left: 9.773553e-03	ci right 1.097974e-02	k: 1140	n:110000
Cons ci ratio: 3.230986e-01	ci left: 1.120825e-03	ci right 1.560689e-03	k: 146	n:110000
KS ci ratio: 1.107165e-02	ci left: 5.296643e-01	ci right 5.355703e-01	k: 58588	n:110000
SYT13   110000 perm   28 sec   (3952 perm/sec)   p_kst 5.326182e-01   p_cons 1.327273e-03   p_joint 1.036364e-02

Joint ci ratio: 1.178655e-01	ci left: 8.594721e-03	ci right 9.679201e-03	k: 1095	n:120000
Cons ci ratio: 3.106689e-01	ci left: 1.119473e-03	ci right 1.538557e-03	k: 158	n:120000
KS ci ratio: 1.059555e-02	ci left: 5.300139e-01	ci right 5.356679e-01	k: 63941	n:120000
SYT13   120000 perm   31 sec   (3889 perm/sec)   p_kst 5.328417e-01   p_cons 1.316667e-03   p_joint 9.125000e-03

Joint ci ratio: 1.286392e-01	ci left: 6.635869e-03	ci right 7.555554e-03	k: 921	n:130000
Cons ci ratio: 3.004525e-01	ci left: 1.111488e-03	ci right 1.511289e-03	k: 169	n:130000
KS ci ratio: 1.017429e-02	ci left: 5.303988e-01	ci right 5.358305e-01	k: 69305	n:130000
SYT13   130000 perm   34 sec   (3829 perm/sec)   p_kst 5.331154e-01   p_cons 1.300000e-03   p_joint 7.084615e-03

Joint ci ratio: 1.248445e-01	ci left: 6.556096e-03	ci right 7.435937e-03	k: 978	n:140000
Cons ci ratio: 2.895843e-01	ci left: 1.118085e-03	ci right 1.503047e-03	k: 182	n:140000
KS ci ratio: 9.800420e-03	ci left: 5.306896e-01	ci right 5.359233e-01	k: 74663	n:140000
SYT13   140000 perm   37 sec   (3768 perm/sec)   p_kst 5.333071e-01   p_cons 1.300000e-03   p_joint 6.985714e-03

Joint ci ratio: 1.000348e-01	ci left: 9.626149e-03	ci right 1.064625e-02	k: 1519	n:150000
Cons ci ratio: 2.776961e-01	ci left: 1.142630e-03	ci right 1.517073e-03	k: 198	n:150000
KS ci ratio: 9.464951e-03	ci left: 5.309447e-01	ci right 5.360006e-01	k: 80021	n:150000
SYT13   150000 perm   40 sec   (3709 perm/sec)   p_kst 5.334733e-01   p_cons 1.320000e-03   p_joint 1.012667e-02

Joint ci ratio: 9.031357e-02	ci left: 1.111162e-02	ci right 1.216868e-02	k: 1861	n:160000
Cons ci ratio: 2.696851e-01	ci left: 1.141070e-03	ci right 1.502389e-03	k: 210	n:160000
KS ci ratio: 9.156437e-03	ci left: 5.314582e-01	ci right 5.363531e-01	k: 85425	n:160000
SYT13   160000 perm   44 sec   (3652 perm/sec)   p_kst 5.339063e-01   p_cons 1.312500e-03   p_joint 1.163125e-02

Joint ci ratio: 9.106458e-02	ci left: 1.029108e-02	ci right 1.127865e-02	k: 1832	n:170000
Cons ci ratio: 2.629206e-01	ci left: 1.134334e-03	ci right 1.483030e-03	k: 221	n:170000
KS ci ratio: 8.888310e-03	ci left: 5.312368e-01	ci right 5.359855e-01	k: 90714	n:170000
SYT13   170000 perm   47 sec   (3595 perm/sec)   p_kst 5.336118e-01   p_cons 1.300000e-03   p_joint 1.077647e-02

Joint ci ratio: 8.950245e-02	ci left: 1.007226e-02	ci right 1.102138e-02	k: 1897	n:180000
Cons ci ratio: 2.577508e-01	ci left: 1.118052e-03	ci right 1.453896e-03	k: 230	n:180000
KS ci ratio: 8.634816e-03	ci left: 5.314810e-01	ci right 5.360957e-01	k: 96082	n:180000
SYT13   180000 perm   51 sec   (3532 perm/sec)   p_kst 5.337889e-01   p_cons 1.277778e-03   p_joint 1.053889e-02

Joint ci ratio: 8.919587e-02	ci left: 9.614078e-03	ci right 1.051675e-02	k: 1911	n:190000
Cons ci ratio: 2.513066e-01	ci left: 1.118337e-03	ci right 1.444554e-03	k: 242	n:190000
KS ci ratio: 8.407261e-03	ci left: 5.313800e-01	ci right 5.358716e-01	k: 101389	n:190000
SYT13   190000 perm   55 sec   (3474 perm/sec)   p_kst 5.336263e-01   p_cons 1.273684e-03   p_joint 1.005789e-02

Joint ci ratio: 8.721428e-02	ci left: 9.563657e-03	ci right 1.044063e-02	k: 1999	n:200000
Cons ci ratio: 2.448425e-01	ci left: 1.123380e-03	ci right 1.441358e-03	k: 255	n:200000
KS ci ratio: 8.195726e-03	ci left: 5.313557e-01	ci right 5.357334e-01	k: 106709	n:200000
SYT13   200000 perm   58 sec   (3422 perm/sec)   p_kst 5.335450e-01   p_cons 1.275000e-03   p_joint 9.995000e-03

Joint ci ratio: 9.393895e-02	ci left: 7.837316e-03	ci right 8.614446e-03	k: 1726	n:210000
Cons ci ratio: 2.388529e-01	ci left: 1.128040e-03	ci right 1.438370e-03	k: 268	n:210000
KS ci ratio: 8.213247e-03	ci left: 5.181797e-01	ci right 5.224579e-01	k: 109267	n:210000
SYT13   210000 perm   62 sec   (3370 perm/sec)   p_kst 5.203190e-01   p_cons 1.276190e-03   p_joint 8.219048e-03

Joint ci ratio: 9.401155e-02	ci left: 7.472131e-03	ci right 8.213652e-03	k: 1724	n:220000
Cons ci ratio: 2.312388e-01	ci left: 1.153769e-03	ci right 1.459614e-03	k: 286	n:220000
KS ci ratio: 8.022747e-03	ci left: 5.183326e-01	ci right 5.225123e-01	k: 114493	n:220000
SYT13   220000 perm   66 sec   (3320 perm/sec)   p_kst 5.204227e-01   p_cons 1.300000e-03   p_joint 7.836364e-03

Joint ci ratio: 9.190427e-02	ci left: 7.486998e-03	ci right 8.212444e-03	k: 1804	n:230000
Cons ci ratio: 2.257967e-01	ci left: 1.160991e-03	ci right 1.460499e-03	k: 300	n:230000
KS ci ratio: 7.846692e-03	ci left: 5.183602e-01	ci right 5.224480e-01	k: 119693	n:230000
SYT13   230000 perm   70 sec   (3272 perm/sec)   p_kst 5.204043e-01   p_cons 1.304348e-03   p_joint 7.843478e-03

Joint ci ratio: 8.457899e-02	ci left: 8.495474e-03	ci right 9.249792e-03	k: 2128	n:240000
Cons ci ratio: 2.235826e-01	ci left: 1.136207e-03	ci right 1.426052e-03	k: 306	n:240000
KS ci ratio: 7.683088e-03	ci left: 5.182990e-01	ci right 5.223006e-01	k: 124872	n:240000
SYT13   240000 perm   74 sec   (3226 perm/sec)   p_kst 5.203000e-01   p_cons 1.275000e-03   p_joint 8.866667e-03

Joint ci ratio: 8.295905e-02	ci left: 8.484614e-03	ci right 9.222840e-03	k: 2212	n:250000
Cons ci ratio: 2.186521e-01	ci left: 1.143658e-03	ci right 1.428106e-03	k: 320	n:250000
KS ci ratio: 7.529911e-03	ci left: 5.182034e-01	ci right 5.221241e-01	k: 130041	n:250000
SYT13   250000 perm   79 sec   (3181 perm/sec)   p_kst 5.201640e-01   p_cons 1.280000e-03   p_joint 8.848000e-03

Joint ci ratio: 8.189769e-02	ci left: 8.376742e-03	ci right 9.095812e-03	k: 2270	n:260000
Cons ci ratio: 2.146767e-01	ci left: 1.143321e-03	ci right 1.421833e-03	k: 332	n:260000
KS ci ratio: 7.388959e-03	ci left: 5.178852e-01	ci right 5.217298e-01	k: 135150	n:260000
SYT13   260000 perm   83 sec   (3136 perm/sec)   p_kst 5.198077e-01   p_cons 1.276923e-03   p_joint 8.730769e-03

Joint ci ratio: 8.257366e-02	ci left: 7.935827e-03	ci right 8.622939e-03	k: 2234	n:270000
Cons ci ratio: 2.103010e-01	ci left: 1.150069e-03	ci right 1.423779e-03	k: 346	n:270000
KS ci ratio: 7.252724e-03	ci left: 5.177912e-01	ci right 5.215639e-01	k: 140313	n:270000
SYT13   270000 perm   87 sec   (3089 perm/sec)   p_kst 5.196778e-01   p_cons 1.281481e-03   p_joint 8.274074e-03

Joint ci ratio: 8.489463e-02	ci left: 7.236191e-03	ci right 7.881207e-03	k: 2115	n:280000
Cons ci ratio: 2.073357e-01	ci left: 1.142841e-03	ci right 1.410510e-03	k: 356	n:280000
KS ci ratio: 7.117745e-03	ci left: 5.181261e-01	ci right 5.218307e-01	k: 145594	n:280000
SYT13   280000 perm   92 sec   (3047 perm/sec)   p_kst 5.199786e-01   p_cons 1.271429e-03   p_joint 7.553571e-03

Joint ci ratio: 8.883909e-02	ci left: 6.372580e-03	ci right 6.968377e-03	k: 1933	n:290000
Cons ci ratio: 2.028390e-01	ci left: 1.155773e-03	ci right 1.419872e-03	k: 372	n:290000
KS ci ratio: 6.993312e-03	ci left: 5.182039e-01	ci right 5.218440e-01	k: 150807	n:290000
SYT13   290000 perm   97 sec   (3004 perm/sec)   p_kst 5.200241e-01   p_cons 1.282759e-03   p_joint 6.665517e-03

Joint ci ratio: 8.771496e-02	ci left: 6.323141e-03	ci right 6.906452e-03	k: 1983	n:300000
Cons ci ratio: 1.981134e-01	ci left: 1.174237e-03	ci right 1.435549e-03	k: 390	n:300000
KS ci ratio: 6.876883e-03	ci left: 5.181537e-01	ci right 5.217326e-01	k: 155983	n:300000
SYT13   300000 perm   101 sec   (2963 perm/sec)   p_kst 5.199433e-01   p_cons 1.300000e-03   p_joint 6.610000e-03

Joint ci ratio: 8.627026e-02	ci left: 6.330597e-03	ci right 6.904492e-03	k: 2050	n:310000
Cons ci ratio: 1.951418e-01	ci left: 1.173162e-03	ci right 1.429855e-03	k: 402	n:310000
KS ci ratio: 6.762716e-03	ci left: 5.183557e-01	ci right 5.218762e-01	k: 161236	n:310000
SYT13   310000 perm   106 sec   (2925 perm/sec)   p_kst 5.201161e-01   p_cons 1.296774e-03   p_joint 6.612903e-03

Joint ci ratio: 8.459364e-02	ci left: 6.383548e-03	ci right 6.950442e-03	k: 2132	n:320000
Cons ci ratio: 1.906965e-01	ci left: 1.193010e-03	ci right 1.447409e-03	k: 421	n:320000
KS ci ratio: 6.657759e-03	ci left: 5.182673e-01	ci right 5.217324e-01	k: 166400	n:320000
SYT13   320000 perm   111 sec   (2888 perm/sec)   p_kst 5.200000e-01   p_cons 1.315625e-03   p_joint 6.662500e-03

Joint ci ratio: 8.354436e-02	ci left: 6.350299e-03	ci right 6.906903e-03	k: 2186	n:330000
Cons ci ratio: 1.886961e-01	ci left: 1.182835e-03	ci right 1.432115e-03	k: 430	n:330000
KS ci ratio: 6.557224e-03	ci left: 5.182089e-01	ci right 5.216211e-01	k: 171572	n:330000
SYT13   330000 perm   116 sec   (2852 perm/sec)   p_kst 5.199152e-01   p_cons 1.303030e-03   p_joint 6.624242e-03

Joint ci ratio: 8.242217e-02	ci left: 6.336332e-03	ci right 6.883893e-03	k: 2246	n:340000
Cons ci ratio: 1.857039e-01	ci left: 1.187293e-03	ci right 1.433098e-03	k: 444	n:340000
KS ci ratio: 6.460576e-03	ci left: 5.181955e-01	ci right 5.215571e-01	k: 176758	n:340000
SYT13   340000 perm   121 sec   (2817 perm/sec)   p_kst 5.198765e-01   p_cons 1.305882e-03   p_joint 6.605882e-03

Joint ci ratio: 8.157570e-02	ci left: 6.286819e-03	ci right 6.824257e-03	k: 2293	n:350000
Cons ci ratio: 1.838551e-01	ci left: 1.177894e-03	ci right 1.419055e-03	k: 453	n:350000
KS ci ratio: 6.366220e-03	ci left: 5.183290e-01	ci right 5.216421e-01	k: 181995	n:350000
SYT13   350000 perm   126 sec   (2783 perm/sec)   p_kst 5.199857e-01   p_cons 1.294286e-03   p_joint 6.551429e-03

Joint ci ratio: 8.179877e-02	ci left: 6.079506e-03	ci right 6.600710e-03	k: 2281	n:360000
Cons ci ratio: 1.818639e-01	ci left: 1.171681e-03	ci right 1.408686e-03	k: 463	n:360000
KS ci ratio: 6.277628e-03	ci left: 5.183165e-01	ci right 5.215832e-01	k: 187182	n:360000
SYT13   360000 perm   131 sec   (2751 perm/sec)   p_kst 5.199500e-01   p_cons 1.286111e-03   p_joint 6.336111e-03

Joint ci ratio: 8.112891e-02	ci left: 6.015798e-03	ci right 6.527116e-03	k: 2319	n:370000
Cons ci ratio: 1.793685e-01	ci left: 1.173561e-03	ci right 1.407335e-03	k: 476	n:370000
KS ci ratio: 6.192902e-03	ci left: 5.182833e-01	ci right 5.215056e-01	k: 192361	n:370000
SYT13   370000 perm   136 sec   (2719 perm/sec)   p_kst 5.198946e-01   p_cons 1.286486e-03   p_joint 6.267568e-03

Joint ci ratio: 7.998176e-02	ci left: 6.030253e-03	ci right 6.535215e-03	k: 2386	n:380000
Cons ci ratio: 1.771542e-01	ci left: 1.172847e-03	ci right 1.403286e-03	k: 488	n:380000
KS ci ratio: 6.109841e-03	ci left: 5.183890e-01	ci right 5.215686e-01	k: 197592	n:380000
SYT13   380000 perm   141 sec   (2688 perm/sec)   p_kst 5.199789e-01   p_cons 1.284211e-03   p_joint 6.278947e-03

Joint ci ratio: 8.046446e-02	ci left: 5.805249e-03	ci right 6.294441e-03	k: 2358	n:390000
Cons ci ratio: 1.757237e-01	ci left: 1.162381e-03	ci right 1.388723e-03	k: 496	n:390000
KS ci ratio: 6.029106e-03	ci left: 5.185665e-01	ci right 5.217050e-01	k: 202853	n:390000
SYT13   390000 perm   147 sec   (2658 perm/sec)   p_kst 5.201359e-01   p_cons 1.271795e-03   p_joint 6.046154e-03

Joint ci ratio: 7.949341e-02	ci left: 5.802218e-03	ci right 6.284980e-03	k: 2416	n:400000
Cons ci ratio: 1.726244e-01	ci left: 1.176360e-03	ci right 1.400964e-03	k: 514	n:400000
KS ci ratio: 5.953634e-03	ci left: 5.185554e-01	ci right 5.216543e-01	k: 208042	n:400000
SYT13   400000 perm   152 sec   (2624 perm/sec)   p_kst 5.201050e-01   p_cons 1.285000e-03   p_joint 6.040000e-03

Joint ci ratio: 7.931794e-02	ci left: 5.686983e-03	ci right 6.159065e-03	k: 2427	n:410000
Cons ci ratio: 1.701636e-01	ci left: 1.182685e-03	ci right 1.404947e-03	k: 529	n:410000
KS ci ratio: 5.882077e-03	ci left: 5.184474e-01	ci right 5.215084e-01	k: 213191	n:410000
SYT13   410000 perm   158 sec   (2593 perm/sec)   p_kst 5.199780e-01   p_cons 1.290244e-03   p_joint 5.919512e-03

Joint ci ratio: 7.927433e-02	ci left: 5.558566e-03	ci right 6.019721e-03	k: 2430	n:420000
Cons ci ratio: 1.685813e-01	ci left: 1.177326e-03	ci right 1.396314e-03	k: 539	n:420000
KS ci ratio: 5.810987e-03	ci left: 5.185211e-01	ci right 5.215453e-01	k: 218414	n:420000
SYT13   420000 perm   164 sec   (2564 perm/sec)   p_kst 5.200333e-01   p_cons 1.283333e-03   p_joint 5.785714e-03

Joint ci ratio: 7.929610e-02	ci left: 5.427003e-03	ci right 5.877372e-03	k: 2429	n:430000
Cons ci ratio: 1.656903e-01	ci left: 1.192285e-03	ci right 1.409873e-03	k: 558	n:430000
KS ci ratio: 5.745384e-03	ci left: 5.183333e-01	ci right 5.213222e-01	k: 223526	n:430000
SYT13   430000 perm   170 sec   (2534 perm/sec)   p_kst 5.198279e-01   p_cons 1.297674e-03   p_joint 5.648837e-03

Joint ci ratio: 7.362028e-02	ci left: 6.166496e-03	ci right 6.640040e-03	k: 2816	n:440000
Cons ci ratio: 1.628022e-01	ci left: 1.208774e-03	ci right 1.425151e-03	k: 578	n:440000
KS ci ratio: 5.681461e-03	ci left: 5.181975e-01	ci right 5.211522e-01	k: 228657	n:440000
SYT13   440000 perm   176 sec   (2507 perm/sec)   p_kst 5.196750e-01   p_cons 1.313636e-03   p_joint 6.400000e-03

Joint ci ratio: 7.284888e-02	ci left: 6.160353e-03	ci right 6.628259e-03	k: 2876	n:450000
Cons ci ratio: 1.610048e-01	ci left: 1.209631e-03	ci right 1.423539e-03	k: 591	n:450000
KS ci ratio: 5.619098e-03	ci left: 5.181146e-01	ci right 5.210363e-01	k: 233809	n:450000
SYT13   450000 perm   182 sec   (2478 perm/sec)   p_kst 5.195756e-01   p_cons 1.313333e-03   p_joint 6.391111e-03

Joint ci ratio: 7.313590e-02	ci left: 5.979459e-03	ci right 6.435490e-03	k: 2854	n:460000
Cons ci ratio: 1.591340e-01	ci left: 1.212551e-03	ci right 1.424245e-03	k: 605	n:460000
KS ci ratio: 5.559520e-03	ci left: 5.179658e-01	ci right 5.208556e-01	k: 238929	n:460000
SYT13   460000 perm   188 sec   (2451 perm/sec)   p_kst 5.194109e-01   p_cons 1.315217e-03   p_joint 6.204348e-03

Joint ci ratio: 7.282067e-02	ci left: 5.904449e-03	ci right 6.352736e-03	k: 2879	n:470000
Cons ci ratio: 1.575817e-01	ci left: 1.211272e-03	ci right 1.420485e-03	k: 617	n:470000
KS ci ratio: 5.499592e-03	ci left: 5.180236e-01	ci right 5.208825e-01	k: 244143	n:470000
SYT13   470000 perm   194 sec   (2426 perm/sec)   p_kst 5.194532e-01   p_cons 1.312766e-03   p_joint 6.125532e-03

Joint ci ratio: 7.224715e-02	ci left: 5.875532e-03	ci right 6.317962e-03	k: 2925	n:480000
Cons ci ratio: 1.560739e-01	ci left: 1.210056e-03	ci right 1.416872e-03	k: 629	n:480000
KS ci ratio: 5.442492e-03	ci left: 5.179938e-01	ci right 5.208227e-01	k: 249316	n:480000
SYT13   480000 perm   200 sec   (2400 perm/sec)   p_kst 5.194083e-01   p_cons 1.310417e-03   p_joint 6.093750e-03

Joint ci ratio: 7.476036e-02	ci left: 5.370934e-03	ci right 5.790047e-03	k: 2733	n:490000
Cons ci ratio: 1.552149e-01	ci left: 1.199090e-03	ci right 1.402799e-03	k: 636	n:490000
KS ci ratio: 5.384031e-03	ci left: 5.182530e-01	ci right 5.210529e-01	k: 254630	n:490000
SYT13   490000 perm   206 sec   (2376 perm/sec)   p_kst 5.196531e-01   p_cons 1.297959e-03   p_joint 5.577551e-03

Joint ci ratio: 7.443675e-02	ci left: 5.310613e-03	ci right 5.723148e-03	k: 2757	n:500000
Cons ci ratio: 1.534188e-01	ci left: 1.203950e-03	ci right 1.405900e-03	k: 651	n:500000
KS ci ratio: 5.329439e-03	ci left: 5.183121e-01	ci right 5.210837e-01	k: 259849	n:500000
SYT13   500000 perm   213 sec   (2352 perm/sec)   p_kst 5.196980e-01   p_cons 1.302000e-03   p_joint 5.514000e-03

Joint ci ratio: 6.987412e-02	ci left: 5.918959e-03	ci right 6.349426e-03	k: 3127	n:510000
Cons ci ratio: 1.515698e-01	ci left: 1.210519e-03	ci right 1.410902e-03	k: 667	n:510000
KS ci ratio: 5.277739e-03	ci left: 5.182493e-01	ci right 5.209936e-01	k: 265007	n:510000
SYT13   510000 perm   219 sec   (2327 perm/sec)   p_kst 5.196216e-01   p_cons 1.307843e-03   p_joint 6.131373e-03

Joint ci ratio: 6.947717e-02	ci left: 5.873152e-03	ci right 6.297764e-03	k: 3163	n:520000
Cons ci ratio: 1.504484e-01	ci left: 1.205743e-03	ci right 1.403726e-03	k: 677	n:520000
KS ci ratio: 5.227314e-03	ci left: 5.182083e-01	ci right 5.209261e-01	k: 270175	n:520000
SYT13   520000 perm   226 sec   (2302 perm/sec)   p_kst 5.195673e-01   p_cons 1.301923e-03   p_joint 6.082692e-03

Joint ci ratio: 7.048547e-02	ci left: 5.597324e-03	ci right 6.008107e-03	k: 3074	n:530000
Cons ci ratio: 1.487036e-01	ci left: 1.212053e-03	ci right 1.408558e-03	k: 693	n:530000
KS ci ratio: 5.178130e-03	ci left: 5.181859e-01	ci right 5.208780e-01	k: 275352	n:530000
SYT13   530000 perm   233 sec   (2279 perm/sec)   p_kst 5.195321e-01   p_cons 1.307547e-03   p_joint 5.800000e-03

Joint ci ratio: 7.033989e-02	ci left: 5.517312e-03	ci right 5.921352e-03	k: 3087	n:540000
Cons ci ratio: 1.472259e-01	ci left: 1.214573e-03	ci right 1.409359e-03	k: 707	n:540000
KS ci ratio: 5.129225e-03	ci left: 5.182701e-01	ci right 5.209371e-01	k: 280586	n:540000
SYT13   540000 perm   239 sec   (2257 perm/sec)   p_kst 5.196037e-01   p_cons 1.309259e-03   p_joint 5.716667e-03

Joint ci ratio: 6.967729e-02	ci left: 5.522393e-03	ci right 5.922841e-03	k: 3146	n:550000
Cons ci ratio: 1.460956e-01	ci left: 1.211756e-03	ci right 1.404468e-03	k: 718	n:550000
KS ci ratio: 5.083068e-03	ci left: 5.182150e-01	ci right 5.208576e-01	k: 285745	n:550000
SYT13   550000 perm   246 sec   (2234 perm/sec)   p_kst 5.195364e-01   p_cons 1.305455e-03   p_joint 5.720000e-03

Joint ci ratio: 7.013050e-02	ci left: 5.353582e-03	ci right 5.744417e-03	k: 3106	n:560000
Cons ci ratio: 1.451903e-01	ci left: 1.205603e-03	ci right 1.396045e-03	k: 727	n:560000
KS ci ratio: 5.037071e-03	ci left: 5.182672e-01	ci right 5.208861e-01	k: 290963	n:560000
SYT13   560000 perm   253 sec   (2212 perm/sec)   p_kst 5.195768e-01   p_cons 1.298214e-03   p_joint 5.546429e-03

Joint ci ratio: 6.979592e-02	ci left: 5.311367e-03	ci right 5.697194e-03	k: 3136	n:570000
Cons ci ratio: 1.443015e-01	ci left: 1.199670e-03	ci right 1.387914e-03	k: 736	n:570000
KS ci ratio: 4.993705e-03	ci left: 5.181774e-01	ci right 5.207732e-01	k: 296101	n:570000
SYT13   570000 perm   260 sec   (2190 perm/sec)   p_kst 5.194754e-01   p_cons 1.291228e-03   p_joint 5.501754e-03

Joint ci ratio: 6.965429e-02	ci left: 5.241808e-03	ci right 5.621779e-03	k: 3149	n:580000
Cons ci ratio: 1.433328e-01	ci left: 1.195606e-03	ci right 1.381846e-03	k: 746	n:580000
KS ci ratio: 4.949199e-03	ci left: 5.183167e-01	ci right 5.208900e-01	k: 301370	n:580000
SYT13   580000 perm   267 sec   (2168 perm/sec)   p_kst 5.196034e-01   p_cons 1.286207e-03   p_joint 5.429310e-03

Joint ci ratio: 6.933735e-02	ci left: 5.201258e-03	ci right 5.576505e-03	k: 3178	n:590000
Cons ci ratio: 1.419148e-01	ci left: 1.199859e-03	ci right 1.384755e-03	k: 761	n:590000
KS ci ratio: 4.907328e-03	ci left: 5.183022e-01	ci right 5.208536e-01	k: 306551	n:590000
SYT13   590000 perm   275 sec   (2148 perm/sec)   p_kst 5.195780e-01   p_cons 1.289831e-03   p_joint 5.386441e-03

Joint ci ratio: 6.914396e-02	ci left: 5.144046e-03	ci right 5.514088e-03	k: 3196	n:600000
Cons ci ratio: 1.407195e-01	ci left: 1.200762e-03	ci right 1.384108e-03	k: 774	n:600000
KS ci ratio: 4.865089e-03	ci left: 5.184332e-01	ci right 5.209632e-01	k: 311819	n:600000
SYT13   600000 perm   282 sec   (2128 perm/sec)   p_kst 5.196983e-01   p_cons 1.290000e-03   p_joint 5.326667e-03

Joint ci ratio: 6.957489e-02	ci left: 4.996879e-03	ci right 5.358665e-03	k: 3157	n:610000
Cons ci ratio: 1.397315e-01	ci left: 1.198477e-03	ci right 1.380083e-03	k: 785	n:610000
KS ci ratio: 4.825300e-03	ci left: 5.184175e-01	ci right 5.209266e-01	k: 317000	n:610000
SYT13   610000 perm   289 sec   (2109 perm/sec)   p_kst 5.196721e-01   p_cons 1.286885e-03   p_joint 5.175410e-03

Joint ci ratio: 6.918257e-02	ci left: 4.973339e-03	ci right 5.331309e-03	k: 3193	n:620000
Cons ci ratio: 1.392020e-01	ci left: 1.188486e-03	ci right 1.367839e-03	k: 791	n:620000
KS ci ratio: 4.786703e-03	ci left: 5.183781e-01	ci right 5.208669e-01	k: 322166	n:620000
SYT13   620000 perm   297 sec   (2090 perm/sec)   p_kst 5.196226e-01   p_cons 1.275806e-03   p_joint 5.150000e-03

Joint ci ratio: 6.620902e-02	ci left: 5.350080e-03	ci right 5.717981e-03	k: 3485	n:630000
Cons ci ratio: 1.382455e-01	ci left: 1.186475e-03	ci right 1.364193e-03	k: 802	n:630000
KS ci ratio: 4.748973e-03	ci left: 5.183448e-01	ci right 5.208138e-01	k: 327335	n:630000
SYT13   630000 perm   304 sec   (2070 perm/sec)   p_kst 5.195794e-01   p_cons 1.273016e-03   p_joint 5.531746e-03

Joint ci ratio: 6.680212e-02	ci left: 5.172742e-03	ci right 5.531758e-03	k: 3424	n:640000
Cons ci ratio: 1.370558e-01	ci left: 1.189059e-03	ci right 1.365506e-03	k: 816	n:640000
KS ci ratio: 4.712902e-03	ci left: 5.182298e-01	ci right 5.206794e-01	k: 332451	n:640000
SYT13   640000 perm   312 sec   (2053 perm/sec)   p_kst 5.194547e-01   p_cons 1.275000e-03   p_joint 5.350000e-03

Joint ci ratio: 6.613843e-02	ci left: 5.197553e-03	ci right 5.554570e-03	k: 3493	n:650000
Cons ci ratio: 1.359782e-01	ci left: 1.190082e-03	ci right 1.365180e-03	k: 829	n:650000
KS ci ratio: 4.676330e-03	ci left: 5.182584e-01	ci right 5.206891e-01	k: 337658	n:650000
SYT13   650000 perm   320 sec   (2034 perm/sec)   p_kst 5.194738e-01   p_cons 1.275385e-03   p_joint 5.373846e-03

Joint ci ratio: 6.556818e-02	ci left: 5.209705e-03	ci right 5.564354e-03	k: 3554	n:660000
Cons ci ratio: 1.349256e-01	ci left: 1.191080e-03	ci right 1.364860e-03	k: 842	n:660000
KS ci ratio: 4.640764e-03	ci left: 5.182680e-01	ci right 5.206803e-01	k: 342853	n:660000
SYT13   660000 perm   327 sec   (2016 perm/sec)   p_kst 5.194742e-01   p_cons 1.275758e-03   p_joint 5.384848e-03

Joint ci ratio: 6.515753e-02	ci left: 5.198014e-03	ci right 5.549567e-03	k: 3599	n:670000
Cons ci ratio: 1.335850e-01	ci left: 1.197824e-03	ci right 1.370713e-03	k: 859	n:670000
KS ci ratio: 4.605530e-03	ci left: 5.183282e-01	ci right 5.207224e-01	k: 348082	n:670000
SYT13   670000 perm   335 sec   (1998 perm/sec)   p_kst 5.195254e-01   p_cons 1.282090e-03   p_joint 5.371642e-03

Joint ci ratio: 6.559196e-02	ci left: 5.053573e-03	ci right 5.397722e-03	k: 3552	n:680000
Cons ci ratio: 1.328918e-01	ci left: 1.193003e-03	ci right 1.364232e-03	k: 868	n:680000
KS ci ratio: 4.571045e-03	ci left: 5.183911e-01	ci right 5.207676e-01	k: 353314	n:680000
SYT13   680000 perm   343 sec   (1981 perm/sec)   p_kst 5.195794e-01   p_cons 1.276471e-03   p_joint 5.223529e-03

Joint ci ratio: 6.186294e-02	ci left: 5.606482e-03	ci right 5.965802e-03	k: 3991	n:690000
Cons ci ratio: 1.316847e-01	ci left: 1.198134e-03	ci right 1.368416e-03	k: 884	n:690000
KS ci ratio: 4.537522e-03	ci left: 5.184305e-01	ci right 5.207896e-01	k: 358531	n:690000
SYT13   690000 perm   351 sec   (1964 perm/sec)   p_kst 5.196101e-01   p_cons 1.281159e-03   p_joint 5.784058e-03

Joint ci ratio: 6.223505e-02	ci left: 5.460275e-03	ci right 5.812406e-03	k: 3944	n:700000
Cons ci ratio: 1.307281e-01	ci left: 1.198980e-03	ci right 1.368048e-03	k: 897	n:700000
KS ci ratio: 4.504570e-03	ci left: 5.184860e-01	ci right 5.208282e-01	k: 363760	n:700000
SYT13   700000 perm   360 sec   (1947 perm/sec)   p_kst 5.196571e-01   p_cons 1.281429e-03   p_joint 5.634286e-03

Joint ci ratio: 6.231700e-02	ci left: 5.369497e-03	ci right 5.716246e-03	k: 3934	n:710000
Cons ci ratio: 1.294368e-01	ci left: 1.206620e-03	ci right 1.374956e-03	k: 915	n:710000
KS ci ratio: 4.473109e-03	ci left: 5.184526e-01	ci right 5.207782e-01	k: 368927	n:710000
SYT13   710000 perm   368 sec   (1930 perm/sec)   p_kst 5.196155e-01   p_cons 1.288732e-03   p_joint 5.540845e-03

Joint ci ratio: 6.184707e-02	ci left: 5.376961e-03	ci right 5.721480e-03	k: 3994	n:720000
Cons ci ratio: 1.286667e-01	ci left: 1.204646e-03	ci right 1.371630e-03	k: 926	n:720000
KS ci ratio: 4.441766e-03	ci left: 5.184799e-01	ci right 5.207894e-01	k: 374137	n:720000
SYT13   720000 perm   376 sec   (1914 perm/sec)   p_kst 5.196347e-01   p_cons 1.286111e-03   p_joint 5.547222e-03

Joint ci ratio: 6.218685e-02	ci left: 5.245303e-03	ci right 5.583298e-03	k: 3951	n:730000
Cons ci ratio: 1.277059e-01	ci left: 1.206707e-03	ci right 1.372633e-03	k: 940	n:730000
KS ci ratio: 4.410395e-03	ci left: 5.185833e-01	ci right 5.208768e-01	k: 379403	n:730000
SYT13   730000 perm   385 sec   (1898 perm/sec)   p_kst 5.197301e-01   p_cons 1.287671e-03   p_joint 5.412329e-03

Joint ci ratio: 6.185952e-02	ci left: 5.230295e-03	ci right 5.565486e-03	k: 3993	n:740000
Cons ci ratio: 1.273013e-01	ci left: 1.198250e-03	ci right 1.362451e-03	k: 946	n:740000
KS ci ratio: 4.381340e-03	ci left: 5.184947e-01	ci right 5.207727e-01	k: 384529	n:740000
SYT13   740000 perm   393 sec   (1883 perm/sec)   p_kst 5.196338e-01   p_cons 1.278378e-03   p_joint 5.395946e-03

Joint ci ratio: 5.965664e-02	ci left: 5.553197e-03	ci right 5.895971e-03	k: 4292	n:750000
Cons ci ratio: 1.265685e-01	ci left: 1.196474e-03	ci right 1.359417e-03	k: 957	n:750000
KS ci ratio: 4.352513e-03	ci left: 5.184472e-01	ci right 5.207100e-01	k: 389684	n:750000
SYT13   750000 perm   402 sec   (1867 perm/sec)   p_kst 5.195787e-01   p_cons 1.276000e-03   p_joint 5.722667e-03

Joint ci ratio: 5.924397e-02	ci left: 5.557903e-03	ci right 5.898513e-03	k: 4352	n:760000
Cons ci ratio: 1.253955e-01	ci left: 1.203669e-03	ci right 1.365960e-03	k: 975	n:760000
KS ci ratio: 4.323405e-03	ci left: 5.184984e-01	ci right 5.207462e-01	k: 394913	n:760000
SYT13   760000 perm   410 sec   (1852 perm/sec)   p_kst 5.196224e-01   p_cons 1.282895e-03   p_joint 5.726316e-03

Joint ci ratio: 5.910298e-02	ci left: 5.512587e-03	ci right 5.849589e-03	k: 4373	n:770000
Cons ci ratio: 1.245686e-01	ci left: 1.204392e-03	ci right 1.365631e-03	k: 988	n:770000
KS ci ratio: 4.296315e-03	ci left: 5.183807e-01	ci right 5.206139e-01	k: 400013	n:770000
SYT13   770000 perm   419 sec   (1837 perm/sec)   p_kst 5.194974e-01   p_cons 1.283117e-03   p_joint 5.679221e-03

Joint ci ratio: 5.875494e-02	ci left: 5.507597e-03	ci right 5.842244e-03	k: 4425	n:780000
Cons ci ratio: 1.241930e-01	ci left: 1.196404e-03	ci right 1.356055e-03	k: 994	n:780000
KS ci ratio: 4.268959e-03	ci left: 5.183559e-01	ci right 5.205747e-01	k: 405183	n:780000
SYT13   780000 perm   428 sec   (1822 perm/sec)   p_kst 5.194654e-01   p_cons 1.274359e-03   p_joint 5.673077e-03

Joint ci ratio: 5.651485e-02	ci left: 5.882053e-03	ci right 6.225382e-03	k: 4781	n:790000
Cons ci ratio: 1.235738e-01	ci left: 1.193525e-03	ci right 1.351940e-03	k: 1004	n:790000
KS ci ratio: 4.241249e-03	ci left: 5.184343e-01	ci right 5.206390e-01	k: 410434	n:790000
SYT13   790000 perm   437 sec   (1807 perm/sec)   p_kst 5.195367e-01   p_cons 1.270886e-03   p_joint 6.051899e-03

Joint ci ratio: 5.696209e-02	ci left: 5.717326e-03	ci right 6.053767e-03	k: 4707	n:800000
Cons ci ratio: 1.227822e-01	ci left: 1.194356e-03	ci right 1.351791e-03	k: 1017	n:800000
KS ci ratio: 4.214049e-03	ci left: 5.185132e-01	ci right 5.207041e-01	k: 415687	n:800000
SYT13   800000 perm   446 sec   (1792 perm/sec)   p_kst 5.196087e-01   p_cons 1.271250e-03   p_joint 5.883750e-03

Joint ci ratio: 5.680057e-02	ci left: 5.679598e-03	ci right 6.012840e-03	k: 4734	n:810000
Cons ci ratio: 1.220056e-01	ci left: 1.195169e-03	ci right 1.351643e-03	k: 1030	n:810000
KS ci ratio: 4.187812e-03	ci left: 5.185372e-01	ci right 5.207145e-01	k: 420897	n:810000
SYT13   810000 perm   456 sec   (1778 perm/sec)   p_kst 5.196259e-01   p_cons 1.271605e-03   p_joint 5.844444e-03

Joint ci ratio: 5.665238e-02	ci left: 5.640386e-03	ci right 5.970436e-03	k: 4759	n:820000
Cons ci ratio: 1.210696e-01	ci left: 1.199513e-03	ci right 1.355264e-03	k: 1046	n:820000
KS ci ratio: 4.161764e-03	ci left: 5.185960e-01	ci right 5.207600e-01	k: 426136	n:820000
SYT13   820000 perm   465 sec   (1764 perm/sec)   p_kst 5.196780e-01   p_cons 1.275610e-03   p_joint 5.803659e-03

Joint ci ratio: 5.622824e-02	ci left: 5.657954e-03	ci right 5.986473e-03	k: 4831	n:830000
Cons ci ratio: 1.203817e-01	ci left: 1.199082e-03	ci right 1.353830e-03	k: 1058	n:830000
KS ci ratio: 4.136076e-03	ci left: 5.186679e-01	ci right 5.208187e-01	k: 431387	n:830000
SYT13   830000 perm   474 sec   (1749 perm/sec)   p_kst 5.197434e-01   p_cons 1.274699e-03   p_joint 5.820482e-03

Joint ci ratio: 5.673428e-02	ci left: 5.490823e-03	ci right 5.812601e-03	k: 4746	n:840000
Cons ci ratio: 1.194823e-01	ci left: 1.203283e-03	ci right 1.357332e-03	k: 1074	n:840000
KS ci ratio: 4.111661e-03	ci left: 5.186404e-01	ci right 5.207785e-01	k: 436556	n:840000
SYT13   840000 perm   484 sec   (1736 perm/sec)   p_kst 5.197095e-01   p_cons 1.278571e-03   p_joint 5.650000e-03

Joint ci ratio: 5.640849e-02	ci left: 5.490015e-03	ci right 5.809838e-03	k: 4801	n:850000
Cons ci ratio: 1.187663e-01	ci left: 1.203965e-03	ci right 1.357113e-03	k: 1087	n:850000
KS ci ratio: 4.087588e-03	ci left: 5.186243e-01	ci right 5.207497e-01	k: 441734	n:850000
SYT13   850000 perm   493 sec   (1723 perm/sec)   p_kst 5.196871e-01   p_cons 1.278824e-03   p_joint 5.648235e-03

Joint ci ratio: 5.394089e-02	ci left: 5.938814e-03	ci right 6.269177e-03	k: 5248	n:860000
Cons ci ratio: 1.176359e-01	ci left: 1.213663e-03	ci right 1.366472e-03	k: 1108	n:860000
KS ci ratio: 4.063941e-03	ci left: 5.186074e-01	ci right 5.207204e-01	k: 446911	n:860000
SYT13   860000 perm   503 sec   (1710 perm/sec)   p_kst 5.196640e-01   p_cons 1.288372e-03   p_joint 6.102326e-03

Joint ci ratio: 5.366068e-02	ci left: 5.932919e-03	ci right 6.261187e-03	k: 5303	n:870000
Cons ci ratio: 1.169003e-01	ci left: 1.215333e-03	ci right 1.367329e-03	k: 1122	n:870000
KS ci ratio: 4.041696e-03	ci left: 5.184679e-01	ci right 5.205687e-01	k: 451981	n:870000
SYT13   870000 perm   513 sec   (1697 perm/sec)   p_kst 5.195184e-01   p_cons 1.289655e-03   p_joint 6.095402e-03

Joint ci ratio: 5.351556e-02	ci left: 5.898010e-03	ci right 6.223436e-03	k: 5332	n:880000
Cons ci ratio: 1.164349e-01	ci left: 1.211451e-03	ci right 1.362317e-03	k: 1131	n:880000
KS ci ratio: 4.018833e-03	ci left: 5.184532e-01	ci right 5.205421e-01	k: 457158	n:880000
SYT13   880000 perm   522 sec   (1684 perm/sec)   p_kst 5.194977e-01   p_cons 1.285227e-03   p_joint 6.059091e-03

Joint ci ratio: 5.593175e-02	ci left: 5.335210e-03	ci right 5.643303e-03	k: 4884	n:890000
Cons ci ratio: 1.213079e-01	ci left: 1.100807e-03	ci right 1.244044e-03	k: 1042	n:890000
KS ci ratio: 3.996074e-03	ci left: 5.184737e-01	ci right 5.205508e-01	k: 462366	n:890000
SYT13   890000 perm   532 sec   (1672 perm/sec)   p_kst 5.195124e-01   p_cons 1.170787e-03   p_joint 5.487640e-03

Joint ci ratio: 5.617679e-02	ci left: 5.229909e-03	ci right 5.533287e-03	k: 4842	n:900000
Cons ci ratio: 1.209032e-01	ci left: 1.096118e-03	ci right 1.238235e-03	k: 1049	n:900000
KS ci ratio: 3.974335e-03	ci left: 5.184138e-01	ci right 5.204794e-01	k: 467502	n:900000
SYT13   900000 perm   542 sec   (1660 perm/sec)   p_kst 5.194467e-01   p_cons 1.165556e-03   p_joint 5.380000e-03

Joint ci ratio: 5.624857e-02	ci left: 5.159431e-03	ci right 5.459115e-03	k: 4830	n:910000
Cons ci ratio: 1.202181e-01	ci left: 1.096862e-03	ci right 1.238212e-03	k: 1061	n:910000
KS ci ratio: 3.951989e-03	ci left: 5.184762e-01	ci right 5.205303e-01	k: 472748	n:910000
SYT13   910000 perm   552 sec   (1647 perm/sec)   p_kst 5.195033e-01   p_cons 1.165934e-03   p_joint 5.307692e-03

Joint ci ratio: 5.592527e-02	ci left: 5.163367e-03	ci right 5.461500e-03	k: 4886	n:920000
Cons ci ratio: 1.192670e-01	ci left: 1.102865e-03	ci right 1.243785e-03	k: 1078	n:920000
KS ci ratio: 3.930795e-03	ci left: 5.184383e-01	ci right 5.204812e-01	k: 477903	n:920000
SYT13   920000 perm   563 sec   (1635 perm/sec)   p_kst 5.194598e-01   p_cons 1.171739e-03   p_joint 5.310870e-03

Joint ci ratio: 5.378871e-02	ci left: 5.525721e-03	ci right 5.832209e-03	k: 5280	n:930000
Cons ci ratio: 1.184463e-01	ci left: 1.106655e-03	ci right 1.247019e-03	k: 1093	n:930000
KS ci ratio: 3.910047e-03	ci left: 5.183872e-01	ci right 5.204191e-01	k: 483045	n:930000
SYT13   930000 perm   573 sec   (1624 perm/sec)   p_kst 5.194032e-01   p_cons 1.175269e-03   p_joint 5.677419e-03

Joint ci ratio: 5.397050e-02	ci left: 5.430197e-03	ci right 5.732437e-03	k: 5245	n:940000
Cons ci ratio: 1.177487e-01	ci left: 1.108304e-03	ci right 1.247991e-03	k: 1106	n:940000
KS ci ratio: 3.888970e-03	ci left: 5.184213e-01	ci right 5.204424e-01	k: 488266	n:940000
SYT13   940000 perm   583 sec   (1612 perm/sec)   p_kst 5.194319e-01   p_cons 1.176596e-03   p_joint 5.579787e-03

Joint ci ratio: 5.368981e-02	ci left: 5.430152e-03	ci right 5.730769e-03	k: 5300	n:950000
Cons ci ratio: 1.168545e-01	ci left: 1.114007e-03	ci right 1.253273e-03	k: 1123	n:950000
KS ci ratio: 3.868377e-03	ci left: 5.184358e-01	ci right 5.204462e-01	k: 493469	n:950000
SYT13   950000 perm   593 sec   (1601 perm/sec)   p_kst 5.194411e-01   p_cons 1.182105e-03   p_joint 5.578947e-03

Joint ci ratio: 5.393748e-02	ci left: 5.324253e-03	ci right 5.620409e-03	k: 5252	n:960000
Cons ci ratio: 1.162870e-01	ci left: 1.113527e-03	ci right 1.252011e-03	k: 1134	n:960000
KS ci ratio: 3.848734e-03	ci left: 5.183687e-01	ci right 5.203687e-01	k: 498594	n:960000
SYT13   960000 perm   604 sec   (1590 perm/sec)   p_kst 5.193688e-01   p_cons 1.181250e-03   p_joint 5.470833e-03

Joint ci ratio: 5.368273e-02	ci left: 5.320217e-03	ci right 5.614707e-03	k: 5302	n:970000
Cons ci ratio: 1.156771e-01	ci left: 1.114060e-03	ci right 1.251833e-03	k: 1146	n:970000
KS ci ratio: 3.828581e-03	ci left: 5.184082e-01	ci right 5.203978e-01	k: 503821	n:970000
SYT13   970000 perm   614 sec   (1580 perm/sec)   p_kst 5.194031e-01   p_cons 1.181443e-03   p_joint 5.465979e-03

Joint ci ratio: 5.350699e-02	ci left: 5.301163e-03	ci right 5.593609e-03	k: 5337	n:980000
Cons ci ratio: 1.150270e-01	ci left: 1.115575e-03	ci right 1.252707e-03	k: 1159	n:980000
KS ci ratio: 3.808974e-03	ci left: 5.184164e-01	ci right 5.203958e-01	k: 509018	n:980000
SYT13   980000 perm   625 sec   (1568 perm/sec)   p_kst 5.194061e-01   p_cons 1.182653e-03   p_joint 5.445918e-03

Joint ci ratio: 5.087306e-02	ci left: 5.809920e-03	ci right 6.114193e-03	k: 5901	n:990000
Cons ci ratio: 1.147310e-01	ci left: 1.110192e-03	ci right 1.246288e-03	k: 1165	n:990000
KS ci ratio: 3.789681e-03	ci left: 5.184223e-01	ci right 5.203917e-01	k: 514213	n:990000
SYT13   990000 perm   636 sec   (1557 perm/sec)   p_kst 5.194071e-01   p_cons 1.176768e-03   p_joint 5.960606e-03

Joint ci ratio: 5.062068e-02	ci left: 5.810073e-03	ci right 6.112800e-03	k: 5960	n:1000000
Cons ci ratio: 1.139516e-01	ci left: 1.114633e-03	ci right 1.250283e-03	k: 1181	n:1000000
KS ci ratio: 3.770897e-03	ci left: 5.183992e-01	ci right 5.203587e-01	k: 519379	n:1000000
SYT13   1000000 perm   647 sec   (1547 perm/sec)   p_kst 5.193790e-01   p_cons 1.181000e-03   p_joint 5.960000e-03

Joint ci ratio: 5.035100e-02	ci left: 5.815114e-03	ci right 6.116443e-03	k: 6024	n:1010000
Cons ci ratio: 1.135681e-01	ci left: 1.111292e-03	ci right 1.246050e-03	k: 1189	n:1010000
KS ci ratio: 3.752397e-03	ci left: 5.183756e-01	ci right 5.203253e-01	k: 524544	n:1010000
SYT13   1010000 perm   658 sec   (1536 perm/sec)   p_kst 5.193505e-01   p_cons 1.177228e-03   p_joint 5.964356e-03

Joint ci ratio: 5.012286e-02	ci left: 5.811347e-03	ci right 6.111077e-03	k: 6079	n:1020000
Cons ci ratio: 1.128589e-01	ci left: 1.114687e-03	ci right 1.248956e-03	k: 1204	n:1020000
KS ci ratio: 3.734709e-03	ci left: 5.182798e-01	ci right 5.202200e-01	k: 529635	n:1020000
SYT13   1020000 perm   669 sec   (1525 perm/sec)   p_kst 5.192500e-01   p_cons 1.180392e-03   p_joint 5.959804e-03

Joint ci ratio: 4.993465e-02	ci left: 5.799027e-03	ci right 6.096966e-03	k: 6125	n:1030000
Cons ci ratio: 1.124399e-01	ci left: 1.112356e-03	ci right 1.245814e-03	k: 1213	n:1030000
KS ci ratio: 3.716835e-03	ci left: 5.182443e-01	ci right 5.201750e-01	k: 534786	n:1030000
SYT13   1030000 perm   680 sec   (1514 perm/sec)   p_kst 5.192097e-01   p_cons 1.177670e-03   p_joint 5.946602e-03

Joint ci ratio: 5.053282e-02	ci left: 5.607480e-03	ci right 5.899129e-03	k: 5982	n:1040000
Cons ci ratio: 1.119340e-01	ci left: 1.111941e-03	ci right 1.244709e-03	k: 1224	n:1040000
KS ci ratio: 3.699066e-03	ci left: 5.182296e-01	ci right 5.201511e-01	k: 539958	n:1040000
SYT13   1040000 perm   691 sec   (1504 perm/sec)   p_kst 5.191904e-01   p_cons 1.176923e-03   p_joint 5.751923e-03

Joint ci ratio: 5.037358e-02	ci left: 5.589808e-03	ci right 5.879595e-03	k: 6020	n:1050000
Cons ci ratio: 1.112997e-01	ci left: 1.114312e-03	ci right 1.246560e-03	k: 1238	n:1050000
KS ci ratio: 3.680910e-03	ci left: 5.183019e-01	ci right 5.202142e-01	k: 545221	n:1050000
SYT13   1050000 perm   703 sec   (1493 perm/sec)   p_kst 5.192581e-01   p_cons 1.179048e-03   p_joint 5.733333e-03

Joint ci ratio: 5.011195e-02	ci left: 5.595762e-03	ci right 5.884308e-03	k: 6083	n:1060000
Cons ci ratio: 1.105436e-01	ci left: 1.119393e-03	ci right 1.251282e-03	k: 1255	n:1060000
KS ci ratio: 3.663600e-03	ci left: 5.182936e-01	ci right 5.201968e-01	k: 550400	n:1060000
SYT13   1060000 perm   715 sec   (1482 perm/sec)   p_kst 5.192453e-01   p_cons 1.183962e-03   p_joint 5.738679e-03

Joint ci ratio: 4.987069e-02	ci left: 5.597916e-03	ci right 5.885143e-03	k: 6142	n:1070000
Cons ci ratio: 1.102371e-01	ci left: 1.115292e-03	ci right 1.246310e-03	k: 1262	n:1070000
KS ci ratio: 3.646846e-03	ci left: 5.182425e-01	ci right 5.201368e-01	k: 555533	n:1070000
SYT13   1070000 perm   726 sec   (1473 perm/sec)   p_kst 5.191897e-01   p_cons 1.179439e-03   p_joint 5.740187e-03

Joint ci ratio: 5.001140e-02	ci left: 5.514989e-03	ci right 5.798783e-03	k: 6108	n:1080000
Cons ci ratio: 1.098898e-01	ci left: 1.112169e-03	ci right 1.242382e-03	k: 1270	n:1080000
KS ci ratio: 3.630273e-03	ci left: 5.181989e-01	ci right 5.200844e-01	k: 560673	n:1080000
SYT13   1080000 perm   738 sec   (1464 perm/sec)   p_kst 5.191417e-01   p_cons 1.175926e-03   p_joint 5.655556e-03

Joint ci ratio: 4.980407e-02	ci left: 5.510598e-03	ci right 5.792956e-03	k: 6159	n:1090000
Cons ci ratio: 1.093320e-01	ci left: 1.113565e-03	ci right 1.243237e-03	k: 1283	n:1090000
KS ci ratio: 3.613478e-03	ci left: 5.182175e-01	ci right 5.200943e-01	k: 565880	n:1090000
SYT13   1090000 perm   749 sec   (1454 perm/sec)   p_kst 5.191560e-01   p_cons 1.177064e-03   p_joint 5.650459e-03

Joint ci ratio: 4.970403e-02	ci left: 5.482944e-03	ci right 5.763305e-03	k: 6184	n:1100000
Cons ci ratio: 1.089932e-01	ci left: 1.110516e-03	ci right 1.239407e-03	k: 1291	n:1100000
KS ci ratio: 3.596803e-03	ci left: 5.182513e-01	ci right 5.201195e-01	k: 571104	n:1100000
SYT13   1100000 perm   761 sec   (1445 perm/sec)   p_kst 5.191855e-01   p_cons 1.173636e-03   p_joint 5.621818e-03

Joint ci ratio: 4.950448e-02	ci left: 5.478034e-03	ci right 5.756987e-03	k: 6234	n:1110000
Cons ci ratio: 1.085739e-01	ci left: 1.109275e-03	ci right 1.237495e-03	k: 1301	n:1110000
KS ci ratio: 3.580092e-03	ci left: 5.183214e-01	ci right 5.201812e-01	k: 576369	n:1110000
SYT13   1110000 perm   773 sec   (1436 perm/sec)   p_kst 5.192514e-01   p_cons 1.172072e-03   p_joint 5.616216e-03

Joint ci ratio: 4.982413e-02	ci left: 5.359455e-03	ci right 5.634183e-03	k: 6155	n:1120000
Cons ci ratio: 1.082421e-01	ci left: 1.106320e-03	ci right 1.233782e-03	k: 1309	n:1120000
KS ci ratio: 3.563803e-03	ci left: 5.183635e-01	ci right 5.202150e-01	k: 581604	n:1120000
SYT13   1120000 perm   785 sec   (1427 perm/sec)   p_kst 5.192893e-01   p_cons 1.168750e-03   p_joint 5.495536e-03

Joint ci ratio: 4.961509e-02	ci left: 5.357472e-03	ci right 5.630913e-03	k: 6207	n:1130000
Cons ci ratio: 1.079953e-01	ci left: 1.101695e-03	ci right 1.228317e-03	k: 1315	n:1130000
KS ci ratio: 3.548118e-03	ci left: 5.183509e-01	ci right 5.201942e-01	k: 586778	n:1130000
SYT13   1130000 perm   797 sec   (1418 perm/sec)   p_kst 5.192726e-01   p_cons 1.163717e-03   p_joint 5.492920e-03

Joint ci ratio: 4.930975e-02	ci left: 5.377187e-03	ci right 5.649896e-03	k: 6284	n:1140000
Cons ci ratio: 1.073849e-01	ci left: 1.104835e-03	ci right 1.231055e-03	k: 1330	n:1140000
KS ci ratio: 3.532142e-03	ci left: 5.184087e-01	ci right 5.202439e-01	k: 592032	n:1140000
SYT13   1140000 perm   809 sec   (1409 perm/sec)   p_kst 5.193263e-01   p_cons 1.166667e-03   p_joint 5.512281e-03

Joint ci ratio: 4.966576e-02	ci left: 5.253987e-03	ci right 5.522427e-03	k: 6195	n:1150000
Cons ci ratio: 1.071038e-01	ci left: 1.101151e-03	ci right 1.226600e-03	k: 1337	n:1150000
KS ci ratio: 3.516373e-03	ci left: 5.184664e-01	ci right 5.202935e-01	k: 597287	n:1150000
SYT13   1150000 perm   821 sec   (1401 perm/sec)   p_kst 5.193800e-01   p_cons 1.162609e-03   p_joint 5.386957e-03

Joint ci ratio: 4.945869e-02	ci left: 5.252966e-03	ci right 5.520203e-03	k: 6247	n:1160000
Cons ci ratio: 1.067059e-01	ci left: 1.100049e-03	ci right 1.224877e-03	k: 1347	n:1160000
KS ci ratio: 3.501097e-03	ci left: 5.184826e-01	ci right 5.203018e-01	k: 602495	n:1160000
SYT13   1160000 perm   833 sec   (1392 perm/sec)   p_kst 5.193922e-01   p_cons 1.161207e-03   p_joint 5.385345e-03

Joint ci ratio: 4.923455e-02	ci left: 5.256185e-03	ci right 5.522340e-03	k: 6304	n:1170000
Cons ci ratio: 1.061950e-01	ci left: 1.101462e-03	ci right 1.225815e-03	k: 1360	n:1170000
KS ci ratio: 3.486658e-03	ci left: 5.184070e-01	ci right 5.202185e-01	k: 607596	n:1170000
SYT13   1170000 perm   845 sec   (1384 perm/sec)   p_kst 5.193128e-01   p_cons 1.162393e-03   p_joint 5.388034e-03

Joint ci ratio: 4.905997e-02	ci left: 5.249308e-03	ci right 5.514146e-03	k: 6349	n:1180000
Cons ci ratio: 1.056529e-01	ci left: 1.103678e-03	ci right 1.227605e-03	k: 1374	n:1180000
KS ci ratio: 3.471518e-03	ci left: 5.184591e-01	ci right 5.202629e-01	k: 612846	n:1180000
SYT13   1180000 perm   859 sec   (1374 perm/sec)   p_kst 5.193610e-01   p_cons 1.164407e-03   p_joint 5.380508e-03

Joint ci ratio: 4.938267e-02	ci left: 5.137129e-03	ci right 5.398061e-03	k: 6267	n:1190000
Cons ci ratio: 1.053089e-01	ci left: 1.101767e-03	ci right 1.225052e-03	k: 1383	n:1190000
KS ci ratio: 3.456346e-03	ci left: 5.185430e-01	ci right 5.203392e-01	k: 618135	n:1190000
SYT13   1190000 perm   871 sec   (1366 perm/sec)   p_kst 5.194412e-01   p_cons 1.162185e-03   p_joint 5.266387e-03

Joint ci ratio: 4.918302e-02	ci left: 5.136296e-03	ci right 5.396100e-03	k: 6318	n:1200000
Cons ci ratio: 1.048177e-01	ci left: 1.103134e-03	ci right 1.225961e-03	k: 1396	n:1200000
KS ci ratio: 3.441365e-03	ci left: 5.186265e-01	ci right 5.204151e-01	k: 623425	n:1200000
SYT13   1200000 perm   884 sec   (1358 perm/sec)   p_kst 5.195208e-01   p_cons 1.163333e-03   p_joint 5.265000e-03

Joint ci ratio: 4.900124e-02	ci left: 5.132213e-03	ci right 5.390825e-03	k: 6365	n:1210000
Cons ci ratio: 1.043333e-01	ci left: 1.104480e-03	ci right 1.226854e-03	k: 1409	n:1210000
KS ci ratio: 3.426901e-03	ci left: 5.186614e-01	ci right 5.204426e-01	k: 628658	n:1210000
SYT13   1210000 perm   897 sec   (1350 perm/sec)   p_kst 5.195521e-01   p_cons 1.164463e-03   p_joint 5.260331e-03

Joint ci ratio: 4.891356e-02	ci left: 5.108766e-03	ci right 5.365722e-03	k: 6388	n:1220000
Cons ci ratio: 1.040021e-01	ci left: 1.102612e-03	ci right 1.224367e-03	k: 1418	n:1220000
KS ci ratio: 3.412751e-03	ci left: 5.186761e-01	ci right 5.204500e-01	k: 633867	n:1220000
SYT13   1220000 perm   910 sec   (1341 perm/sec)   p_kst 5.195631e-01   p_cons 1.162295e-03   p_joint 5.236066e-03

Joint ci ratio: 4.961418e-02	ci left: 4.924287e-03	ci right 5.175613e-03	k: 6210	n:1230000
Cons ci ratio: 1.036013e-01	ci left: 1.102358e-03	ci right 1.223588e-03	k: 1429	n:1230000
KS ci ratio: 3.398671e-03	ci left: 5.187060e-01	ci right 5.204727e-01	k: 639095	n:1230000
SYT13   1230000 perm   923 sec   (1333 perm/sec)   p_kst 5.195894e-01   p_cons 1.161789e-03   p_joint 5.048780e-03

Joint ci ratio: 4.972798e-02	ci left: 4.862271e-03	ci right 5.111017e-03	k: 6182	n:1240000
Cons ci ratio: 1.030620e-01	ci left: 1.105252e-03	ci right 1.226129e-03	k: 1444	n:1240000
KS ci ratio: 3.385551e-03	ci left: 5.186194e-01	ci right 5.203789e-01	k: 644179	n:1240000
SYT13   1240000 perm   936 sec   (1325 perm/sec)   p_kst 5.194992e-01   p_cons 1.164516e-03   p_joint 4.985484e-03

Joint ci ratio: 4.962021e-02	ci left: 4.844704e-03	ci right 5.091999e-03	k: 6209	n:1250000
Cons ci ratio: 1.026015e-01	ci left: 1.106543e-03	ci right 1.226987e-03	k: 1457	n:1250000
KS ci ratio: 3.371960e-03	ci left: 5.186261e-01	ci right 5.203786e-01	k: 649378	n:1250000
SYT13   1250000 perm   949 sec   (1318 perm/sec)   p_kst 5.195024e-01   p_cons 1.165600e-03   p_joint 4.967200e-03

Joint ci ratio: 4.826148e-02	ci left: 5.082999e-03	ci right 5.335156e-03	k: 6562	n:1260000
Cons ci ratio: 1.019737e-01	ci left: 1.111681e-03	ci right 1.231900e-03	k: 1475	n:1260000
KS ci ratio: 3.358611e-03	ci left: 5.186208e-01	ci right 5.203664e-01	k: 654562	n:1260000
SYT13   1260000 perm   962 sec   (1310 perm/sec)   p_kst 5.194937e-01   p_cons 1.170635e-03   p_joint 5.207937e-03

Joint ci ratio: 4.809335e-02	ci left: 5.078760e-03	ci right 5.329804e-03	k: 6608	n:1270000
Cons ci ratio: 1.017673e-01	ci left: 1.107532e-03	ci right 1.227045e-03	k: 1481	n:1270000
KS ci ratio: 3.345409e-03	ci left: 5.186172e-01	ci right 5.203559e-01	k: 659748	n:1270000
SYT13   1270000 perm   975 sec   (1302 perm/sec)   p_kst 5.194866e-01   p_cons 1.166142e-03   p_joint 5.203150e-03

Joint ci ratio: 4.791611e-02	ci left: 5.076903e-03	ci right 5.326906e-03	k: 6657	n:1280000
Cons ci ratio: 1.013917e-01	ci left: 1.107255e-03	ci right 1.226271e-03	k: 1492	n:1280000
KS ci ratio: 3.332143e-03	ci left: 5.186465e-01	ci right 5.203784e-01	k: 664976	n:1280000
SYT13   1280000 perm   989 sec   (1294 perm/sec)   p_kst 5.195125e-01   p_cons 1.165625e-03   p_joint 5.200781e-03

Joint ci ratio: 4.775155e-02	ci left: 5.072780e-03	ci right 5.321698e-03	k: 6703	n:1290000
Cons ci ratio: 1.011888e-01	ci left: 1.103205e-03	ci right 1.221534e-03	k: 1498	n:1290000
KS ci ratio: 3.319095e-03	ci left: 5.186661e-01	ci right 5.203912e-01	k: 670192	n:1290000
SYT13   1290000 perm   1003 sec   (1287 perm/sec)   p_kst 5.195287e-01   p_cons 1.161240e-03   p_joint 5.196124e-03

Joint ci ratio: 4.764191e-02	ci left: 5.057319e-03	ci right 5.304893e-03	k: 6734	n:1300000
Cons ci ratio: 1.009200e-01	ci left: 1.100717e-03	ci right 1.218447e-03	k: 1506	n:1300000
KS ci ratio: 3.306846e-03	ci left: 5.185876e-01	ci right 5.203061e-01	k: 675281	n:1300000
SYT13   1300000 perm   1016 sec   (1279 perm/sec)   p_kst 5.194469e-01   p_cons 1.158462e-03   p_joint 5.180000e-03

Joint ci ratio: 4.718034e-02	ci left: 5.118286e-03	ci right 5.366352e-03	k: 6866	n:1310000
Cons ci ratio: 1.005206e-01	ci left: 1.101244e-03	ci right 1.218537e-03	k: 1518	n:1310000
KS ci ratio: 3.294158e-03	ci left: 5.185974e-01	ci right 5.203093e-01	k: 680484	n:1310000
SYT13   1310000 perm   1030 sec   (1272 perm/sec)   p_kst 5.194534e-01   p_cons 1.158779e-03   p_joint 5.241221e-03

Joint ci ratio: 4.708832e-02	ci left: 5.099724e-03	ci right 5.346394e-03	k: 6893	n:1320000
Cons ci ratio: 1.001586e-01	ci left: 1.101025e-03	ci right 1.217848e-03	k: 1529	n:1320000
KS ci ratio: 3.281818e-03	ci left: 5.185760e-01	ci right 5.202814e-01	k: 685646	n:1320000
SYT13   1320000 perm   1044 sec   (1265 perm/sec)   p_kst 5.194288e-01   p_cons 1.158333e-03   p_joint 5.221970e-03

Joint ci ratio: 4.689138e-02	ci left: 5.104477e-03	ci right 5.350317e-03	k: 6951	n:1330000
Cons ci ratio: 9.963883e-02	ci left: 1.104476e-03	ci right 1.221022e-03	k: 1545	n:1330000
KS ci ratio: 3.269360e-03	ci left: 5.185941e-01	ci right 5.202931e-01	k: 690860	n:1330000
SYT13   1330000 perm   1057 sec   (1258 perm/sec)   p_kst 5.194436e-01   p_cons 1.161654e-03   p_joint 5.226316e-03

Outputting figure to mutsig2_images.part000000000170/SYT13.6_1305_1330000_0.51944_0.0011617_0.0052263.png
                gene_name: SYT13
               theta_stop: 0.100 
                    nperm: 1330000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0012 
                  p_joint: 0.0052 
     ci_joint_bounds_left: 0.0051 
    ci_joint_bounds_right: 0.0054 

Current progress: 31 percent done.
SYT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
KS ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
SYT9   10000 perm   2 sec   (5077 perm/sec)   p_kst 5.892000e-01   p_cons 1.600000e-03   p_joint 1.300000e-02

Joint ci ratio: 2.027314e-01	ci left: 1.648770e-02	ci right 2.025418e-02	k: 366	n:20000
Cons ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
KS ci ratio: 2.375352e-02	ci left: 5.696665e-01	ci right 5.834113e-01	k: 11531	n:20000
SYT9   20000 perm   4 sec   (4477 perm/sec)   p_kst 5.765500e-01   p_cons 3.150000e-03   p_joint 1.830000e-02

Joint ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
Cons ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
KS ci ratio: 1.954306e-02	ci left: 5.672123e-01	ci right 5.784403e-01	k: 17185	n:30000
SYT9   30000 perm   7 sec   (4289 perm/sec)   p_kst 5.728333e-01   p_cons 2.866667e-03   p_joint 1.503333e-02

Joint ci ratio: 1.577622e-01	ci left: 1.399978e-02	ci right 1.642135e-02	k: 607	n:40000
Cons ci ratio: 3.650115e-01	ci left: 2.351456e-03	ci right 3.422738e-03	k: 114	n:40000
KS ci ratio: 1.697631e-02	ci left: 5.664827e-01	ci right 5.762069e-01	k: 22854	n:40000
SYT9   40000 perm   10 sec   (4144 perm/sec)   p_kst 5.713500e-01   p_cons 2.850000e-03   p_joint 1.517500e-02

Joint ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
Cons ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
KS ci ratio: 1.490789e-02	ci left: 5.759797e-01	ci right 5.846509e-01	k: 29016	n:50000
SYT9   50000 perm   12 sec   (4068 perm/sec)   p_kst 5.803200e-01   p_cons 2.860000e-03   p_joint 2.122000e-02

Joint ci ratio: 1.178142e-01	ci left: 1.704832e-02	ci right 1.919866e-02	k: 1086	n:60000
Cons ci ratio: 3.196637e-01	ci left: 2.100991e-03	ci right 2.914990e-03	k: 149	n:60000
KS ci ratio: 1.364222e-02	ci left: 5.751709e-01	ci right 5.830881e-01	k: 34748	n:60000
SYT9   60000 perm   15 sec   (3996 perm/sec)   p_kst 5.791333e-01   p_cons 2.483333e-03   p_joint 1.810000e-02

Joint ci ratio: 1.145896e-01	ci left: 1.549984e-02	ci right 1.739770e-02	k: 1150	n:70000
Cons ci ratio: 2.985276e-01	ci left: 2.090783e-03	ci right 2.837130e-03	k: 171	n:70000
KS ci ratio: 1.260635e-02	ci left: 5.763905e-01	ci right 5.837171e-01	k: 40604	n:70000
SYT9   70000 perm   18 sec   (3923 perm/sec)   p_kst 5.800571e-01   p_cons 2.442857e-03   p_joint 1.642857e-02

Joint ci ratio: 1.137111e-01	ci left: 1.380452e-02	ci right 1.548094e-02	k: 1170	n:80000
Cons ci ratio: 2.833007e-01	ci left: 2.049609e-03	ci right 2.737273e-03	k: 190	n:80000
KS ci ratio: 1.178359e-02	ci left: 5.769837e-01	ci right 5.838354e-01	k: 46433	n:80000
SYT9   80000 perm   21 sec   (3853 perm/sec)   p_kst 5.804125e-01   p_cons 2.375000e-03   p_joint 1.462500e-02

Joint ci ratio: 9.180504e-02	ci left: 1.894323e-02	ci right 2.077679e-02	k: 1786	n:90000
Cons ci ratio: 2.689079e-01	ci left: 2.039062e-03	ci right 2.682574e-03	k: 211	n:90000
KS ci ratio: 1.111530e-02	ci left: 5.769342e-01	ci right 5.833939e-01	k: 52215	n:90000
SYT9   90000 perm   24 sec   (3788 perm/sec)   p_kst 5.801667e-01   p_cons 2.344444e-03   p_joint 1.984444e-02

Joint ci ratio: 8.904821e-02	ci left: 1.816280e-02	ci right 1.986526e-02	k: 1900	n:100000
Cons ci ratio: 2.506447e-01	ci left: 2.134356e-03	ci right 2.755066e-03	k: 243	n:100000
KS ci ratio: 1.054722e-02	ci left: 5.769937e-01	ci right 5.831216e-01	k: 58006	n:100000
SYT9   100000 perm   27 sec   (3724 perm/sec)   p_kst 5.800600e-01   p_cons 2.430000e-03   p_joint 1.900000e-02

Joint ci ratio: 7.822710e-02	ci left: 2.144440e-02	ci right 2.319909e-02	k: 2454	n:110000
Cons ci ratio: 2.382696e-01	ci left: 2.162220e-03	ci right 2.755408e-03	k: 269	n:110000
KS ci ratio: 1.006383e-02	ci left: 5.767764e-01	ci right 5.826194e-01	k: 63767	n:110000
SYT9   110000 perm   30 sec   (3660 perm/sec)   p_kst 5.797000e-01   p_cons 2.445455e-03   p_joint 2.230909e-02

Joint ci ratio: 7.380732e-02	ci left: 2.211832e-02	ci right 2.382151e-02	k: 2755	n:120000
Cons ci ratio: 2.116662e-01	ci left: 2.548390e-03	ci right 3.159362e-03	k: 341	n:120000
KS ci ratio: 9.632094e-03	ci left: 5.770680e-01	ci right 5.826615e-01	k: 69584	n:120000
SYT9   120000 perm   33 sec   (3600 perm/sec)   p_kst 5.798667e-01   p_cons 2.841667e-03   p_joint 2.295833e-02

Joint ci ratio: 7.225664e-02	ci left: 2.133792e-02	ci right 2.294503e-02	k: 2877	n:130000
Cons ci ratio: 2.026777e-01	ci left: 2.578459e-03	ci right 3.167140e-03	k: 372	n:130000
KS ci ratio: 9.258997e-03	ci left: 5.769265e-01	ci right 5.823007e-01	k: 75350	n:130000
SYT9   130000 perm   37 sec   (3541 perm/sec)   p_kst 5.796154e-01   p_cons 2.861538e-03   p_joint 2.213077e-02

Joint ci ratio: 7.043881e-02	ci left: 2.087995e-02	ci right 2.241138e-02	k: 3029	n:140000
Cons ci ratio: 1.942633e-01	ci left: 2.618294e-03	ci right 3.188318e-03	k: 405	n:140000
KS ci ratio: 8.917511e-03	ci left: 5.772807e-01	ci right 5.824588e-01	k: 81182	n:140000
SYT9   140000 perm   40 sec   (3486 perm/sec)   p_kst 5.798714e-01   p_cons 2.892857e-03   p_joint 2.163571e-02

Joint ci ratio: 6.924163e-02	ci left: 2.019513e-02	ci right 2.165014e-02	k: 3137	n:150000
Cons ci ratio: 1.905534e-01	ci left: 2.545260e-03	ci right 3.087575e-03	k: 421	n:150000
KS ci ratio: 8.623713e-03	ci left: 5.768836e-01	ci right 5.818867e-01	k: 86908	n:150000
SYT9   150000 perm   44 sec   (3434 perm/sec)   p_kst 5.793867e-01   p_cons 2.806667e-03   p_joint 2.091333e-02

Joint ci ratio: 6.616202e-02	ci left: 2.075796e-02	ci right 2.218445e-02	k: 3434	n:160000
Cons ci ratio: 1.839162e-01	ci left: 2.570855e-03	ci right 3.097417e-03	k: 452	n:160000
KS ci ratio: 8.351256e-03	ci left: 5.768828e-01	ci right 5.817269e-01	k: 92689	n:160000
SYT9   160000 perm   47 sec   (3383 perm/sec)   p_kst 5.793063e-01   p_cons 2.825000e-03   p_joint 2.146250e-02

Joint ci ratio: 6.240713e-02	ci left: 2.197401e-02	ci right 2.339528e-02	k: 3855	n:170000
Cons ci ratio: 1.788563e-01	ci left: 2.565625e-03	ci right 3.075095e-03	k: 478	n:170000
KS ci ratio: 8.096444e-03	ci left: 5.772845e-01	ci right 5.819833e-01	k: 98538	n:170000
SYT9   170000 perm   51 sec   (3331 perm/sec)   p_kst 5.796353e-01   p_cons 2.811765e-03   p_joint 2.267647e-02

Joint ci ratio: 5.979878e-02	ci left: 2.261896e-02	ci right 2.401868e-02	k: 4196	n:180000
Cons ci ratio: 1.729941e-01	ci left: 2.598356e-03	ci right 3.095648e-03	k: 511	n:180000
KS ci ratio: 7.864687e-03	ci left: 5.775769e-01	ci right 5.821428e-01	k: 104375	n:180000
SYT9   180000 perm   55 sec   (3279 perm/sec)   p_kst 5.798611e-01   p_cons 2.838889e-03   p_joint 2.331111e-02

Joint ci ratio: 5.795765e-02	ci left: 2.282869e-02	ci right 2.419643e-02	k: 4466	n:190000
Cons ci ratio: 1.675189e-01	ci left: 2.632928e-03	ci right 3.119279e-03	k: 545	n:190000
KS ci ratio: 7.652993e-03	ci left: 5.777611e-01	ci right 5.822049e-01	k: 110197	n:190000
SYT9   190000 perm   59 sec   (3234 perm/sec)   p_kst 5.799842e-01   p_cons 2.868421e-03   p_joint 2.350526e-02

Joint ci ratio: 5.670730e-02	ci left: 2.267286e-02	ci right 2.400100e-02	k: 4666	n:200000
Cons ci ratio: 1.638121e-01	ci left: 2.621098e-03	ci right 3.093494e-03	k: 570	n:200000
KS ci ratio: 7.462191e-03	ci left: 5.776231e-01	ci right 5.819546e-01	k: 115958	n:200000
SYT9   200000 perm   63 sec   (3190 perm/sec)   p_kst 5.797900e-01   p_cons 2.850000e-03   p_joint 2.333000e-02

Joint ci ratio: 5.638837e-02	ci left: 2.186053e-02	ci right 2.313365e-02	k: 4723	n:210000
Cons ci ratio: 1.595377e-01	ci left: 2.637932e-03	ci right 3.099769e-03	k: 601	n:210000
KS ci ratio: 7.278647e-03	ci left: 5.779237e-01	ci right 5.821503e-01	k: 121808	n:210000
SYT9   210000 perm   67 sec   (3145 perm/sec)   p_kst 5.800381e-01   p_cons 2.861905e-03   p_joint 2.249048e-02

Joint ci ratio: 5.606713e-02	ci left: 2.112658e-02	ci right 2.234971e-02	k: 4781	n:220000
Cons ci ratio: 1.560767e-01	ci left: 2.635907e-03	ci right 3.086441e-03	k: 628	n:220000
KS ci ratio: 7.108541e-03	ci left: 5.781617e-01	ci right 5.822907e-01	k: 127650	n:220000
SYT9   220000 perm   71 sec   (3104 perm/sec)   p_kst 5.802273e-01   p_cons 2.854545e-03   p_joint 2.173182e-02

Joint ci ratio: 5.417577e-02	ci left: 2.165321e-02	ci right 2.286322e-02	k: 5118	n:230000
Cons ci ratio: 1.522507e-01	ci left: 2.655068e-03	ci right 3.096738e-03	k: 660	n:230000
KS ci ratio: 6.952805e-03	ci left: 5.781712e-01	ci right 5.822094e-01	k: 133444	n:230000
SYT9   230000 perm   75 sec   (3060 perm/sec)   p_kst 5.801913e-01   p_cons 2.869565e-03   p_joint 2.225217e-02

Joint ci ratio: 5.287116e-02	ci left: 2.179932e-02	ci right 2.298726e-02	k: 5373	n:240000
Cons ci ratio: 1.484783e-01	ci left: 2.680780e-03	ci right 3.114697e-03	k: 694	n:240000
KS ci ratio: 6.802278e-03	ci left: 5.785102e-01	ci right 5.824629e-01	k: 139317	n:240000
SYT9   240000 perm   79 sec   (3020 perm/sec)   p_kst 5.804875e-01   p_cons 2.891667e-03   p_joint 2.238750e-02

Joint ci ratio: 5.213215e-02	ci left: 2.153913e-02	ci right 2.269599e-02	k: 5528	n:250000
Cons ci ratio: 1.450729e-01	ci left: 2.700703e-03	ci right 3.126951e-03	k: 727	n:250000
KS ci ratio: 6.667137e-03	ci left: 5.783826e-01	ci right 5.822556e-01	k: 145080	n:250000
SYT9   250000 perm   84 sec   (2979 perm/sec)   p_kst 5.803200e-01   p_cons 2.908000e-03   p_joint 2.211200e-02

Joint ci ratio: 5.247082e-02	ci left: 2.046367e-02	ci right 2.157012e-02	k: 5463	n:260000
Cons ci ratio: 1.424558e-01	ci left: 2.696941e-03	ci right 3.114263e-03	k: 754	n:260000
KS ci ratio: 6.582331e-03	ci left: 5.750983e-01	ci right 5.789000e-01	k: 150020	n:260000
SYT9   260000 perm   88 sec   (2939 perm/sec)   p_kst 5.770000e-01   p_cons 2.900000e-03   p_joint 2.101154e-02

Joint ci ratio: 5.165833e-02	ci left: 2.034178e-02	ci right 2.142410e-02	k: 5637	n:270000
Cons ci ratio: 1.403359e-01	ci left: 2.679224e-03	ci right 3.087119e-03	k: 777	n:270000
KS ci ratio: 6.454681e-03	ci left: 5.754822e-01	ci right 5.792124e-01	k: 155884	n:270000
SYT9   270000 perm   93 sec   (2901 perm/sec)   p_kst 5.773481e-01   p_cons 2.877778e-03   p_joint 2.087778e-02

Joint ci ratio: 5.143184e-02	ci left: 1.980199e-02	ci right 2.085083e-02	k: 5690	n:280000
Cons ci ratio: 1.368590e-01	ci left: 2.721445e-03	ci right 3.124667e-03	k: 817	n:280000
KS ci ratio: 6.335380e-03	ci left: 5.757464e-01	ci right 5.794091e-01	k: 161722	n:280000
SYT9   280000 perm   98 sec   (2863 perm/sec)   p_kst 5.775786e-01   p_cons 2.917857e-03   p_joint 2.032143e-02

Joint ci ratio: 5.043804e-02	ci left: 1.988857e-02	ci right 2.092105e-02	k: 5916	n:290000
Cons ci ratio: 1.340993e-01	ci left: 2.740872e-03	ci right 3.138130e-03	k: 851	n:290000
KS ci ratio: 6.224654e-03	ci left: 5.758205e-01	ci right 5.794193e-01	k: 167510	n:290000
SYT9   290000 perm   103 sec   (2829 perm/sec)   p_kst 5.776207e-01   p_cons 2.934483e-03   p_joint 2.040000e-02

Joint ci ratio: 5.126575e-02	ci left: 1.862635e-02	ci right 1.960964e-02	k: 5734	n:300000
Cons ci ratio: 1.325547e-01	ci left: 2.713950e-03	ci right 3.102418e-03	k: 871	n:300000
KS ci ratio: 6.119622e-03	ci left: 5.758834e-01	ci right 5.794217e-01	k: 173296	n:300000
SYT9   300000 perm   107 sec   (2794 perm/sec)   p_kst 5.776533e-01   p_cons 2.903333e-03   p_joint 1.911333e-02

Joint ci ratio: 5.097930e-02	ci left: 1.823877e-02	ci right 1.919606e-02	k: 5801	n:310000
Cons ci ratio: 1.303315e-01	ci left: 2.719996e-03	ci right 3.102294e-03	k: 901	n:310000
KS ci ratio: 6.019853e-03	ci left: 5.759331e-01	ci right 5.794138e-01	k: 179079	n:310000
SYT9   310000 perm   112 sec   (2761 perm/sec)   p_kst 5.776742e-01   p_cons 2.906452e-03   p_joint 1.871290e-02

Joint ci ratio: 4.722104e-02	ci left: 2.058321e-02	ci right 2.158174e-02	k: 6745	n:320000
Cons ci ratio: 1.278046e-01	ci left: 2.743866e-03	ci right 3.121475e-03	k: 937	n:320000
KS ci ratio: 5.923026e-03	ci left: 5.761271e-01	ci right 5.795527e-01	k: 184909	n:320000
SYT9   320000 perm   117 sec   (2728 perm/sec)   p_kst 5.778406e-01   p_cons 2.928125e-03   p_joint 2.107812e-02

Joint ci ratio: 4.651993e-02	ci left: 2.057340e-02	ci right 2.155624e-02	k: 6950	n:330000
Cons ci ratio: 1.256134e-01	ci left: 2.757550e-03	ci right 3.130052e-03	k: 970	n:330000
KS ci ratio: 5.829747e-03	ci left: 5.763916e-01	ci right 5.797646e-01	k: 190766	n:330000
SYT9   330000 perm   122 sec   (2696 perm/sec)   p_kst 5.780788e-01   p_cons 2.939394e-03   p_joint 2.106061e-02

Joint ci ratio: 4.567665e-02	ci left: 2.071841e-02	ci right 2.168977e-02	k: 7208	n:340000
Cons ci ratio: 1.239030e-01	ci left: 2.753378e-03	ci right 3.119881e-03	k: 997	n:340000
KS ci ratio: 5.743611e-03	ci left: 5.763966e-01	ci right 5.797197e-01	k: 196540	n:340000
SYT9   340000 perm   128 sec   (2666 perm/sec)   p_kst 5.780588e-01   p_cons 2.932353e-03   p_joint 2.120000e-02

Joint ci ratio: 4.549465e-02	ci left: 2.029866e-02	ci right 2.124644e-02	k: 7269	n:350000
Cons ci ratio: 1.310838e-01	ci left: 2.381474e-03	ci right 2.718275e-03	k: 891	n:350000
KS ci ratio: 5.659725e-03	ci left: 5.765275e-01	ci right 5.798026e-01	k: 202358	n:350000
SYT9   350000 perm   133 sec   (2635 perm/sec)   p_kst 5.781657e-01   p_cons 2.545714e-03   p_joint 2.076857e-02

Joint ci ratio: 4.313358e-02	ci left: 2.194380e-02	ci right 2.291391e-02	k: 8073	n:360000
Cons ci ratio: 1.294972e-01	ci left: 2.374441e-03	ci right 2.705870e-03	k: 913	n:360000
KS ci ratio: 5.576900e-03	ci left: 5.768710e-01	ci right 5.800999e-01	k: 208255	n:360000
SYT9   360000 perm   138 sec   (2603 perm/sec)   p_kst 5.784861e-01   p_cons 2.536111e-03   p_joint 2.242500e-02

Joint ci ratio: 4.261315e-02	ci left: 2.188278e-02	ci right 2.283823e-02	k: 8272	n:370000
Cons ci ratio: 1.273545e-01	ci left: 2.391360e-03	ci right 2.719210e-03	k: 944	n:370000
KS ci ratio: 5.500712e-03	ci left: 5.769205e-01	ci right 5.801053e-01	k: 214050	n:370000
SYT9   370000 perm   144 sec   (2573 perm/sec)   p_kst 5.785135e-01   p_cons 2.551351e-03   p_joint 2.235676e-02

Joint ci ratio: 3.933813e-02	ci left: 2.496461e-02	ci right 2.596896e-02	k: 9676	n:380000
Cons ci ratio: 1.258980e-01	ci left: 2.384490e-03	ci right 2.707381e-03	k: 966	n:380000
KS ci ratio: 5.429584e-03	ci left: 5.767859e-01	ci right 5.799287e-01	k: 219776	n:380000
SYT9   380000 perm   149 sec   (2545 perm/sec)   p_kst 5.783579e-01   p_cons 2.542105e-03   p_joint 2.546316e-02

Joint ci ratio: 3.979204e-02	ci left: 2.379615e-02	ci right 2.476479e-02	k: 9468	n:390000
Cons ci ratio: 1.243644e-01	ci left: 2.382961e-03	ci right 2.701425e-03	k: 990	n:390000
KS ci ratio: 5.358609e-03	ci left: 5.768894e-01	ci right 5.799915e-01	k: 225592	n:390000
SYT9   390000 perm   155 sec   (2516 perm/sec)   p_kst 5.784410e-01   p_cons 2.538462e-03   p_joint 2.427692e-02

Joint ci ratio: 3.985186e-02	ci left: 2.314663e-02	ci right 2.409028e-02	k: 9446	n:400000
Cons ci ratio: 1.225230e-01	ci left: 2.396072e-03	ci right 2.711203e-03	k: 1020	n:400000
KS ci ratio: 5.291404e-03	ci left: 5.768904e-01	ci right 5.799535e-01	k: 231369	n:400000
SYT9   400000 perm   161 sec   (2488 perm/sec)   p_kst 5.784225e-01   p_cons 2.550000e-03   p_joint 2.361500e-02

Joint ci ratio: 3.612846e-02	ci left: 2.740769e-02	ci right 2.841851e-02	k: 11443	n:410000
Cons ci ratio: 1.207610e-01	ci left: 2.408577e-03	ci right 2.720471e-03	k: 1050	n:410000
KS ci ratio: 5.227345e-03	ci left: 5.768281e-01	ci right 5.798537e-01	k: 237120	n:410000
SYT9   410000 perm   167 sec   (2461 perm/sec)   p_kst 5.783415e-01   p_cons 2.560976e-03   p_joint 2.790976e-02

Joint ci ratio: 3.768027e-02	ci left: 2.464787e-02	ci right 2.559679e-02	k: 10550	n:420000
Cons ci ratio: 1.193500e-01	ci left: 2.408966e-03	ci right 2.717008e-03	k: 1075	n:420000
KS ci ratio: 5.165356e-03	ci left: 5.767881e-01	ci right 5.797775e-01	k: 242879	n:420000
SYT9   420000 perm   172 sec   (2435 perm/sec)   p_kst 5.782833e-01   p_cons 2.559524e-03   p_joint 2.511905e-02

Joint ci ratio: 3.739827e-02	ci left: 2.444783e-02	ci right 2.538184e-02	k: 10712	n:430000
Cons ci ratio: 1.180949e-01	ci left: 2.404843e-03	ci right 2.708898e-03	k: 1098	n:430000
KS ci ratio: 5.104377e-03	ci left: 5.768595e-01	ci right 5.798138e-01	k: 248685	n:430000
SYT9   430000 perm   179 sec   (2408 perm/sec)   p_kst 5.783372e-01   p_cons 2.553488e-03   p_joint 2.491163e-02

Joint ci ratio: 3.781264e-02	ci left: 2.339215e-02	ci right 2.429595e-02	k: 10490	n:440000
Cons ci ratio: 1.171931e-01	ci left: 2.387686e-03	ci right 2.687107e-03	k: 1115	n:440000
KS ci ratio: 5.047036e-03	ci left: 5.767801e-01	ci right 5.797007e-01	k: 254426	n:440000
SYT9   440000 perm   185 sec   (2383 perm/sec)   p_kst 5.782409e-01   p_cons 2.534091e-03   p_joint 2.384091e-02

Joint ci ratio: 3.710493e-02	ci left: 2.375297e-02	ci right 2.465317e-02	k: 10890	n:450000
Cons ci ratio: 1.158004e-01	ci left: 2.392878e-03	ci right 2.689141e-03	k: 1142	n:450000
KS ci ratio: 4.991061e-03	ci left: 5.767555e-01	ci right 5.796435e-01	k: 260190	n:450000
SYT9   450000 perm   191 sec   (2357 perm/sec)   p_kst 5.782000e-01   p_cons 2.537778e-03   p_joint 2.420000e-02

Joint ci ratio: 3.620264e-02	ci left: 2.440421e-02	ci right 2.530613e-02	k: 11432	n:460000
Cons ci ratio: 1.142606e-01	ci left: 2.406312e-03	ci right 2.700009e-03	k: 1173	n:460000
KS ci ratio: 4.936843e-03	ci left: 5.767387e-01	ci right 5.795951e-01	k: 265957	n:460000
SYT9   460000 perm   197 sec   (2333 perm/sec)   p_kst 5.781674e-01   p_cons 2.550000e-03   p_joint 2.485217e-02

Joint ci ratio: 3.613479e-02	ci left: 2.398608e-02	ci right 2.487086e-02	k: 11480	n:470000
Cons ci ratio: 1.133003e-01	ci left: 2.396455e-03	ci right 2.686327e-03	k: 1193	n:470000
KS ci ratio: 4.881776e-03	ci left: 5.769803e-01	ci right 5.798060e-01	k: 271845	n:470000
SYT9   470000 perm   204 sec   (2308 perm/sec)   p_kst 5.783936e-01   p_cons 2.538298e-03   p_joint 2.442553e-02

Joint ci ratio: 3.584468e-02	ci left: 2.387449e-02	ci right 2.474793e-02	k: 11668	n:480000
Cons ci ratio: 1.119944e-01	ci left: 2.403220e-03	ci right 2.690338e-03	k: 1221	n:480000
KS ci ratio: 4.831626e-03	ci left: 5.768973e-01	ci right 5.796934e-01	k: 277582	n:480000
SYT9   480000 perm   210 sec   (2285 perm/sec)   p_kst 5.782958e-01   p_cons 2.543750e-03   p_joint 2.430833e-02

Joint ci ratio: 3.546803e-02	ci left: 2.389089e-02	ci right 2.475556e-02	k: 11917	n:490000
Cons ci ratio: 1.109554e-01	ci left: 2.399804e-03	ci right 2.683680e-03	k: 1244	n:490000
KS ci ratio: 4.782849e-03	ci left: 5.768321e-01	ci right 5.795996e-01	k: 283326	n:490000
SYT9   490000 perm   217 sec   (2262 perm/sec)   p_kst 5.782163e-01   p_cons 2.538776e-03   p_joint 2.432041e-02

Joint ci ratio: 3.668867e-02	ci left: 2.191231e-02	ci right 2.273324e-02	k: 11160	n:500000
Cons ci ratio: 1.096849e-01	ci left: 2.408208e-03	ci right 2.689606e-03	k: 1273	n:500000
KS ci ratio: 4.733793e-03	ci left: 5.769478e-01	ci right 5.796873e-01	k: 289159	n:500000
SYT9   500000 perm   223 sec   (2239 perm/sec)   p_kst 5.783180e-01   p_cons 2.546000e-03   p_joint 2.232000e-02

Joint ci ratio: 3.650341e-02	ci left: 2.170799e-02	ci right 2.251706e-02	k: 11276	n:510000
Cons ci ratio: 1.084988e-01	ci left: 2.414393e-03	ci right 2.693267e-03	k: 1301	n:510000
KS ci ratio: 4.687345e-03	ci left: 5.769413e-01	ci right 5.796539e-01	k: 294932	n:510000
SYT9   510000 perm   230 sec   (2214 perm/sec)   p_kst 5.782980e-01   p_cons 2.550980e-03   p_joint 2.210980e-02

Joint ci ratio: 3.620730e-02	ci left: 2.164495e-02	ci right 2.244500e-02	k: 11462	n:520000
Cons ci ratio: 1.075126e-01	ci left: 2.412869e-03	ci right 2.688874e-03	k: 1325	n:520000
KS ci ratio: 4.643026e-03	ci left: 5.768525e-01	ci right 5.795389e-01	k: 300662	n:520000
SYT9   520000 perm   237 sec   (2190 perm/sec)   p_kst 5.781962e-01   p_cons 2.548077e-03   p_joint 2.204231e-02

Joint ci ratio: 3.554107e-02	ci left: 2.203881e-02	ci right 2.283812e-02	k: 11891	n:530000
Cons ci ratio: 1.060422e-01	ci left: 2.435291e-03	ci right 2.709814e-03	k: 1362	n:530000
KS ci ratio: 4.597734e-03	ci left: 5.770012e-01	ci right 5.796621e-01	k: 306516	n:530000
SYT9   530000 perm   244 sec   (2168 perm/sec)   p_kst 5.783321e-01   p_cons 2.569811e-03   p_joint 2.243585e-02

Joint ci ratio: 3.535004e-02	ci left: 2.187109e-02	ci right 2.265997e-02	k: 12022	n:540000
Cons ci ratio: 1.050829e-01	ci left: 2.435267e-03	ci right 2.707150e-03	k: 1387	n:540000
KS ci ratio: 4.554796e-03	ci left: 5.770315e-01	ci right 5.796676e-01	k: 312309	n:540000
SYT9   540000 perm   252 sec   (2143 perm/sec)   p_kst 5.783500e-01   p_cons 2.568519e-03   p_joint 2.226296e-02

Joint ci ratio: 3.538143e-02	ci left: 2.144452e-02	ci right 2.221871e-02	k: 12006	n:550000
Cons ci ratio: 1.041862e-01	ci left: 2.433484e-03	ci right 2.702707e-03	k: 1411	n:550000
KS ci ratio: 4.513106e-03	ci left: 5.770536e-01	ci right 5.796656e-01	k: 318098	n:550000
SYT9   550000 perm   259 sec   (2122 perm/sec)   p_kst 5.783600e-01   p_cons 2.565455e-03   p_joint 2.182909e-02

Joint ci ratio: 3.531491e-02	ci left: 2.114825e-02	ci right 2.191028e-02	k: 12055	n:560000
Cons ci ratio: 1.033481e-01	ci left: 2.430034e-03	ci right 2.696582e-03	k: 1434	n:560000
KS ci ratio: 4.474310e-03	ci left: 5.768820e-01	ci right 5.794707e-01	k: 323779	n:560000
SYT9   560000 perm   266 sec   (2103 perm/sec)   p_kst 5.781768e-01   p_cons 2.560714e-03   p_joint 2.152679e-02

Joint ci ratio: 3.541789e-02	ci left: 2.066585e-02	ci right 2.141271e-02	k: 11991	n:570000
Cons ci ratio: 1.025300e-01	ci left: 2.426714e-03	ci right 2.690663e-03	k: 1457	n:570000
KS ci ratio: 4.434964e-03	ci left: 5.768851e-01	ci right 5.794510e-01	k: 329556	n:570000
SYT9   570000 perm   274 sec   (2082 perm/sec)   p_kst 5.781684e-01   p_cons 2.556140e-03   p_joint 2.103684e-02

Joint ci ratio: 3.516778e-02	ci left: 2.060347e-02	ci right 2.134271e-02	k: 12163	n:580000
Cons ci ratio: 1.015935e-01	ci left: 2.430238e-03	ci right 2.692012e-03	k: 1484	n:580000
KS ci ratio: 4.397462e-03	ci left: 5.767967e-01	ci right 5.793404e-01	k: 335280	n:580000
SYT9   580000 perm   281 sec   (2063 perm/sec)   p_kst 5.780690e-01   p_cons 2.558621e-03   p_joint 2.097069e-02

Joint ci ratio: 3.440655e-02	ci left: 2.115661e-02	ci right 2.189895e-02	k: 12700	n:590000
Cons ci ratio: 1.010176e-01	ci left: 2.417130e-03	ci right 2.675929e-03	k: 1501	n:590000
KS ci ratio: 4.359017e-03	ci left: 5.769217e-01	ci right 5.794436e-01	k: 341128	n:590000
SYT9   590000 perm   289 sec   (2045 perm/sec)   p_kst 5.781831e-01   p_cons 2.544068e-03   p_joint 2.152542e-02

Joint ci ratio: 3.458995e-02	ci left: 2.059406e-02	ci right 2.132058e-02	k: 12573	n:600000
Cons ci ratio: 1.003853e-01	ci left: 2.407713e-03	ci right 2.663795e-03	k: 1520	n:600000
KS ci ratio: 4.321961e-03	ci left: 5.769976e-01	ci right 5.794983e-01	k: 346949	n:600000
SYT9   600000 perm   296 sec   (2026 perm/sec)   p_kst 5.782483e-01   p_cons 2.533333e-03   p_joint 2.095500e-02

Joint ci ratio: 3.534077e-02	ci left: 1.942098e-02	ci right 2.012129e-02	k: 12059	n:610000
Cons ci ratio: 9.960263e-02	ci left: 2.406602e-03	ci right 2.660454e-03	k: 1544	n:610000
KS ci ratio: 4.286439e-03	ci left: 5.770022e-01	ci right 5.794823e-01	k: 352728	n:610000
SYT9   610000 perm   304 sec   (2008 perm/sec)   p_kst 5.782426e-01   p_cons 2.531148e-03   p_joint 1.976885e-02

Outputting figure to mutsig2_images.part000000000170/SYT9.6_1504_610000_0.57824_0.0025311_0.019769.png
                gene_name: SYT9
               theta_stop: 0.100 
                    nperm: 610000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0025 
      ci_cons_bounds_left: 0.0024 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 33 percent done.
T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
T   10000 perm   2 sec   (5414 perm/sec)   p_kst 6.250000e-01   p_cons 7.536000e-01   p_joint 7.789000e-01

Outputting figure to mutsig2_images.part000000000170/T.6_1340_10000_0.625_0.7536_0.7789.png
                gene_name: T
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 34 percent done.
TAAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
Cons ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
TAAR2   10000 perm   2 sec   (5974 perm/sec)   p_kst 5.310000e-01   p_cons 1.580000e-02   p_joint 9.360000e-02

Joint ci ratio: 1.060895e-01	ci left: 6.050025e-02	ci right 6.732720e-02	k: 1277	n:20000
Cons ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
KS ci ratio: 2.657864e-02	ci left: 5.139989e-01	ci right 5.278950e-01	k: 10419	n:20000
TAAR2   20000 perm   4 sec   (5156 perm/sec)   p_kst 5.209500e-01   p_cons 1.730000e-02   p_joint 6.385000e-02

Joint ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
Cons ci ratio: 1.704043e-01	ci left: 1.585478e-02	ci right 1.883974e-02	k: 519	n:30000
KS ci ratio: 2.164615e-02	ci left: 5.165624e-01	ci right 5.278999e-01	k: 15667	n:30000
TAAR2   30000 perm   6 sec   (4938 perm/sec)   p_kst 5.222333e-01   p_cons 1.730000e-02   p_joint 7.120000e-02

Joint ci ratio: 7.829210e-02	ci left: 5.666142e-02	ci right 6.130286e-02	k: 2358	n:40000
Cons ci ratio: 1.506252e-01	ci left: 1.539466e-02	ci right 1.792621e-02	k: 665	n:40000
KS ci ratio: 1.874383e-02	ci left: 5.173910e-01	ci right 5.272058e-01	k: 20892	n:40000
TAAR2   40000 perm   8 sec   (4769 perm/sec)   p_kst 5.223000e-01   p_cons 1.662500e-02   p_joint 5.895000e-02

Joint ci ratio: 7.280627e-02	ci left: 5.280136e-02	ci right 5.681052e-02	k: 2739	n:50000
Cons ci ratio: 1.342733e-01	ci left: 1.563358e-02	ci right 1.790302e-02	k: 837	n:50000
KS ci ratio: 1.676175e-02	ci left: 5.180106e-01	ci right 5.267868e-01	k: 26120	n:50000
TAAR2   50000 perm   11 sec   (4649 perm/sec)   p_kst 5.224000e-01   p_cons 1.674000e-02   p_joint 5.478000e-02

Joint ci ratio: 6.156101e-02	ci left: 6.134801e-02	ci right 6.526103e-02	k: 3797	n:60000
Cons ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
KS ci ratio: 1.530803e-02	ci left: 5.181772e-01	ci right 5.261873e-01	k: 31331	n:60000
TAAR2   60000 perm   13 sec   (4539 perm/sec)   p_kst 5.221833e-01   p_cons 1.778333e-02   p_joint 6.328333e-02

Joint ci ratio: 5.676234e-02	ci left: 6.197229e-02	ci right 6.560683e-02	k: 4464	n:70000
Cons ci ratio: 1.100586e-01	ci left: 1.681947e-02	ci right 1.879222e-02	k: 1245	n:70000
KS ci ratio: 1.418017e-02	ci left: 5.182059e-01	ci right 5.256209e-01	k: 36534	n:70000
TAAR2   70000 perm   16 sec   (4412 perm/sec)   p_kst 5.219143e-01   p_cons 1.778571e-02   p_joint 6.377143e-02

Joint ci ratio: 5.708486e-02	ci left: 5.407133e-02	ci right 5.726099e-02	k: 4452	n:80000
Cons ci ratio: 9.958551e-02	ci left: 1.805298e-02	ci right 1.995713e-02	k: 1519	n:80000
KS ci ratio: 1.324948e-02	ci left: 5.190067e-01	ci right 5.259416e-01	k: 41798	n:80000
TAAR2   80000 perm   19 sec   (4320 perm/sec)   p_kst 5.224750e-01   p_cons 1.898750e-02   p_joint 5.565000e-02

Outputting figure to mutsig2_images.part000000000170/TAAR2.6_1064_80000_0.52248_0.018988_0.05565.png
                gene_name: TAAR2
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 36 percent done.
TAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
Cons ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
KS ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
TAF2   10000 perm   2 sec   (4184 perm/sec)   p_kst 6.354000e-01   p_cons 3.310000e-02   p_joint 1.727000e-01

Joint ci ratio: 6.018285e-02	ci left: 1.697071e-01	ci right 1.802875e-01	k: 3499	n:20000
Cons ci ratio: 1.526953e-01	ci left: 2.945960e-02	ci right 3.437773e-02	k: 637	n:20000
KS ci ratio: 2.098011e-02	ci left: 6.290364e-01	ci right 6.424241e-01	k: 12715	n:20000
TAF2   20000 perm   5 sec   (3760 perm/sec)   p_kst 6.357500e-01   p_cons 3.185000e-02   p_joint 1.749500e-01

Joint ci ratio: 5.161318e-02	ci left: 1.570883e-01	ci right 1.654441e-01	k: 4837	n:30000
Cons ci ratio: 1.230259e-01	ci left: 3.071616e-02	ci right 3.477499e-02	k: 981	n:30000
KS ci ratio: 1.719647e-02	ci left: 6.284862e-01	ci right 6.394212e-01	k: 19019	n:30000
TAF2   30000 perm   8 sec   (3621 perm/sec)   p_kst 6.339667e-01   p_cons 3.270000e-02   p_joint 1.612333e-01

Joint ci ratio: 5.130078e-02	ci left: 1.240977e-01	ci right 1.306565e-01	k: 5094	n:40000
Cons ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
KS ci ratio: 1.507827e-02	ci left: 6.234422e-01	ci right 6.329392e-01	k: 25128	n:40000
TAF2   40000 perm   11 sec   (3537 perm/sec)   p_kst 6.282000e-01   p_cons 3.220000e-02   p_joint 1.273500e-01

Joint ci ratio: 4.664653e-02	ci left: 1.208656e-01	ci right 1.266581e-01	k: 6187	n:50000
Cons ci ratio: 9.651186e-02	ci left: 3.039641e-02	ci right 3.349824e-02	k: 1596	n:50000
KS ci ratio: 1.343744e-02	ci left: 6.256504e-01	ci right 6.341345e-01	k: 31495	n:50000
TAF2   50000 perm   14 sec   (3468 perm/sec)   p_kst 6.299000e-01   p_cons 3.192000e-02   p_joint 1.237400e-01

Outputting figure to mutsig2_images.part000000000170/TAF2.6_3704_50000_0.6299_0.03192_0.12374.png
                gene_name: TAF2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 38 percent done.
SYT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
SYT14   10000 perm   2 sec   (5909 perm/sec)   p_kst 4.432000e-01   p_cons 1.109000e-01   p_joint 2.388000e-01

Joint ci ratio: 4.481498e-02	ci left: 2.704581e-01	ci right 2.829069e-01	k: 5533	n:20000
Cons ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
KS ci ratio: 3.134112e-02	ci left: 4.319568e-01	ci right 4.457610e-01	k: 8777	n:20000
SYT14   20000 perm   4 sec   (5181 perm/sec)   p_kst 4.388500e-01   p_cons 1.051500e-01   p_joint 2.766500e-01

Outputting figure to mutsig2_images.part000000000170/SYT14.5_1900_20000_0.43885_0.10515_0.27665.png
                gene_name: SYT14
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 39 percent done.
SYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
KS ci ratio: 4.248217e-02	ci left: 4.499948e-01	ci right 4.696286e-01	k: 4598	n:10000
SYT3   10000 perm   2 sec   (5072 perm/sec)   p_kst 4.598000e-01   p_cons 1.341000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000170/SYT3.5_1805_10000_0.4598_0.1341_0.3418.png
                gene_name: SYT3
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
TAAR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
Cons ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
KS ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
TAAR8   10000 perm   2 sec   (6400 perm/sec)   p_kst 2.878000e-01   p_cons 3.804000e-01   p_joint 4.006000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR8.5_1031_10000_0.2878_0.3804_0.4006.png
                gene_name: TAAR8
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 42 percent done.
TAF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
Cons ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
KS ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
TAF4B   10000 perm   2 sec   (4946 perm/sec)   p_kst 3.490000e-01   p_cons 6.067000e-01   p_joint 4.899000e-01

Outputting figure to mutsig2_images.part000000000170/TAF4B.5_2649_10000_0.349_0.6067_0.4899.png
                gene_name: TAF4B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 44 percent done.
SYNCRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.692213e-02	ci left: 1.616039e-01	ci right 1.763894e-01	k: 1689	n:10000
Cons ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
KS ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
SYNCRIP   10000 perm   2 sec   (5348 perm/sec)   p_kst 7.753000e-01   p_cons 3.520000e-02   p_joint 1.689000e-01

Joint ci ratio: 5.396467e-02	ci left: 2.030856e-01	ci right 2.143992e-01	k: 4174	n:20000
Cons ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
KS ci ratio: 1.493741e-02	ci left: 7.690975e-01	ci right 7.807225e-01	k: 15499	n:20000
SYNCRIP   20000 perm   4 sec   (4767 perm/sec)   p_kst 7.749500e-01   p_cons 3.570000e-02   p_joint 2.087000e-01

Joint ci ratio: 3.645471e-02	ci left: 2.731011e-01	ci right 2.832752e-01	k: 8345	n:30000
Cons ci ratio: 1.181960e-01	ci left: 3.327262e-02	ci right 3.748464e-02	k: 1060	n:30000
KS ci ratio: 1.215146e-02	ci left: 7.714740e-01	ci right 7.809392e-01	k: 23287	n:30000
SYNCRIP   30000 perm   7 sec   (4544 perm/sec)   p_kst 7.762333e-01   p_cons 3.533333e-02   p_joint 2.781667e-01

Joint ci ratio: 3.246269e-02	ci left: 2.627935e-01	ci right 2.714903e-01	k: 10685	n:40000
Cons ci ratio: 1.021617e-01	ci left: 3.368355e-02	ci right 3.733429e-02	k: 1419	n:40000
KS ci ratio: 1.055627e-02	ci left: 7.710263e-01	ci right 7.792337e-01	k: 31006	n:40000
SYNCRIP   40000 perm   9 sec   (4399 perm/sec)   p_kst 7.751500e-01   p_cons 3.547500e-02   p_joint 2.671250e-01

Joint ci ratio: 3.461198e-02	ci left: 2.006142e-01	ci right 2.077001e-01	k: 10207	n:50000
Cons ci ratio: 9.153691e-02	ci left: 3.375819e-02	ci right 3.701604e-02	k: 1768	n:50000
KS ci ratio: 9.432331e-03	ci left: 7.718168e-01	ci right 7.791512e-01	k: 38775	n:50000
SYNCRIP   50000 perm   12 sec   (4282 perm/sec)   p_kst 7.755000e-01   p_cons 3.536000e-02   p_joint 2.041400e-01

Outputting figure to mutsig2_images.part000000000170/SYNCRIP.4_1958_50000_0.7755_0.03536_0.20414.png
                gene_name: SYNCRIP
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 45 percent done.
SYNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
KS ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
SYNJ1   10000 perm   2 sec   (4381 perm/sec)   p_kst 9.746000e-01   p_cons 9.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYNJ1.4_5001_10000_0.9746_0.9534_1.png
                gene_name: SYNJ1
               theta_stop: 0.0087 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
SYNM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
SYNM   10000 perm   2 sec   (4312 perm/sec)   p_kst 9.500000e-03   p_cons 2.419000e-01   p_joint 1.480000e-02

Joint ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
Cons ci ratio: 4.683545e-02	ci left: 2.532862e-01	ci right 2.654838e-01	k: 5187	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
SYNM   20000 perm   5 sec   (3883 perm/sec)   p_kst 9.650000e-03   p_cons 2.593500e-01   p_joint 3.920000e-02

Joint ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
Cons ci ratio: 3.847134e-02	ci left: 2.521285e-01	ci right 2.620519e-01	k: 7712	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
SYNM   30000 perm   8 sec   (3744 perm/sec)   p_kst 9.800000e-03   p_cons 2.570667e-01   p_joint 3.140000e-02

Joint ci ratio: 1.607412e-01	ci left: 1.347140e-02	ci right 1.584982e-02	k: 585	n:40000
Cons ci ratio: 3.341122e-02	ci left: 2.517285e-01	ci right 2.603070e-01	k: 10240	n:40000
KS ci ratio: 2.001318e-01	ci left: 8.548862e-03	ci right 1.047335e-02	k: 379	n:40000
SYNM   40000 perm   11 sec   (3626 perm/sec)   p_kst 9.475000e-03   p_cons 2.560000e-01   p_joint 1.462500e-02

Joint ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
Cons ci ratio: 2.992674e-02	ci left: 2.516416e-01	ci right 2.593068e-01	k: 12773	n:50000
KS ci ratio: 1.790038e-01	ci left: 8.649199e-03	ci right 1.036847e-02	k: 474	n:50000
SYNM   50000 perm   14 sec   (3547 perm/sec)   p_kst 9.480000e-03   p_cons 2.554600e-01   p_joint 1.246000e-02

Joint ci ratio: 1.046904e-01	ci left: 2.163668e-02	ci right 2.404311e-02	k: 1369	n:60000
Cons ci ratio: 2.720460e-02	ci left: 2.535734e-01	ci right 2.605835e-01	k: 15424	n:60000
KS ci ratio: 1.542436e-01	ci left: 9.828034e-03	ci right 1.148648e-02	k: 638	n:60000
SYNM   60000 perm   17 sec   (3481 perm/sec)   p_kst 1.063333e-02   p_cons 2.570667e-01   p_joint 2.281667e-02

Joint ci ratio: 1.085602e-01	ci left: 1.729213e-02	ci right 1.929094e-02	k: 1279	n:70000
Cons ci ratio: 2.603732e-02	ci left: 2.414050e-01	ci right 2.477877e-01	k: 17121	n:70000
KS ci ratio: 1.424643e-01	ci left: 9.937235e-03	ci right 1.147516e-02	k: 748	n:70000
SYNM   70000 perm   20 sec   (3423 perm/sec)   p_kst 1.068571e-02   p_cons 2.445857e-01   p_joint 1.827143e-02

Joint ci ratio: 8.298113e-02	ci left: 2.601024e-02	ci right 2.827423e-02	k: 2170	n:80000
Cons ci ratio: 2.437548e-02	ci left: 2.413132e-01	ci right 2.472804e-01	k: 19543	n:80000
KS ci ratio: 1.351102e-01	ci left: 9.708558e-03	ci right 1.112728e-02	k: 832	n:80000
SYNM   80000 perm   24 sec   (3369 perm/sec)   p_kst 1.040000e-02   p_cons 2.442875e-01   p_joint 2.712500e-02

Joint ci ratio: 7.485903e-02	ci left: 2.845873e-02	ci right 3.068284e-02	k: 2660	n:90000
Cons ci ratio: 2.299042e-02	ci left: 2.413406e-01	ci right 2.469647e-01	k: 21973	n:90000
KS ci ratio: 1.273231e-01	ci left: 9.758236e-03	ci right 1.109582e-02	k: 937	n:90000
SYNM   90000 perm   27 sec   (3321 perm/sec)   p_kst 1.041111e-02   p_cons 2.441444e-01   p_joint 2.955556e-02

Joint ci ratio: 7.835065e-02	ci left: 2.346236e-02	ci right 2.538536e-02	k: 2441	n:100000
Cons ci ratio: 2.177792e-02	ci left: 2.420379e-01	ci right 2.473769e-01	k: 24470	n:100000
KS ci ratio: 1.211554e-01	ci left: 9.731957e-03	ci right 1.099669e-02	k: 1035	n:100000
SYNM   100000 perm   31 sec   (3268 perm/sec)   p_kst 1.035000e-02   p_cons 2.447000e-01   p_joint 2.441000e-02

Joint ci ratio: 7.683021e-02	ci left: 2.222923e-02	ci right 2.401422e-02	k: 2542	n:110000
Cons ci ratio: 2.070542e-02	ci left: 2.432125e-01	ci right 2.483100e-01	k: 27033	n:110000
KS ci ratio: 1.164815e-01	ci left: 9.596958e-03	ci right 1.079271e-02	k: 1120	n:110000
SYNM   110000 perm   34 sec   (3207 perm/sec)   p_kst 1.018182e-02   p_cons 2.457545e-01   p_joint 2.310909e-02

Joint ci ratio: 6.764193e-02	ci left: 2.630331e-02	ci right 2.815296e-02	k: 3266	n:120000
Cons ci ratio: 1.978818e-02	ci left: 2.439888e-01	ci right 2.488734e-01	k: 29571	n:120000
KS ci ratio: 1.109697e-01	ci left: 9.720231e-03	ci right 1.087029e-02	k: 1234	n:120000
SYNM   120000 perm   38 sec   (3163 perm/sec)   p_kst 1.028333e-02   p_cons 2.464250e-01   p_joint 2.721667e-02

Joint ci ratio: 6.282478e-02	ci left: 2.816266e-02	ci right 2.999689e-02	k: 3779	n:130000
Cons ci ratio: 1.903329e-02	ci left: 2.436684e-01	ci right 2.483584e-01	k: 31981	n:130000
KS ci ratio: 1.070992e-01	ci left: 9.653414e-03	ci right 1.075321e-02	k: 1325	n:130000
SYNM   130000 perm   42 sec   (3119 perm/sec)   p_kst 1.019231e-02   p_cons 2.460077e-01   p_joint 2.906923e-02

Joint ci ratio: 6.352520e-02	ci left: 2.563677e-02	ci right 2.732578e-02	k: 3706	n:140000
Cons ci ratio: 1.834100e-02	ci left: 2.437528e-01	ci right 2.482720e-01	k: 34441	n:140000
KS ci ratio: 1.031669e-01	ci left: 9.680262e-03	ci right 1.074017e-02	k: 1428	n:140000
SYNM   140000 perm   45 sec   (3078 perm/sec)   p_kst 1.020000e-02   p_cons 2.460071e-01   p_joint 2.647143e-02

Joint ci ratio: 6.188352e-02	ci left: 2.524648e-02	ci right 2.686524e-02	k: 3907	n:150000
Cons ci ratio: 1.772614e-02	ci left: 2.436825e-01	ci right 2.480473e-01	k: 36879	n:150000
KS ci ratio: 9.924628e-02	ci left: 9.782200e-03	ci right 1.081019e-02	k: 1543	n:150000
SYNM   150000 perm   49 sec   (3032 perm/sec)   p_kst 1.028667e-02   p_cons 2.458600e-01   p_joint 2.604667e-02

Outputting figure to mutsig2_images.part000000000170/SYNM.4_4713_150000_0.010287_0.24586_0.026047.png
                gene_name: SYNM
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 48 percent done.
SYPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
SYPL2   10000 perm   2 sec   (5893 perm/sec)   p_kst 4.951000e-01   p_cons 3.428000e-01   p_joint 4.748000e-01

Outputting figure to mutsig2_images.part000000000170/SYPL2.4_843_10000_0.4951_0.3428_0.4748.png
                gene_name: SYPL2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 50 percent done.
SYTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
Cons ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
KS ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
SYTL2   10000 perm   2 sec   (4254 perm/sec)   p_kst 5.374000e-01   p_cons 1.570000e-02   p_joint 9.250000e-02

Joint ci ratio: 6.908657e-02	ci left: 1.338391e-01	ci right 1.434662e-01	k: 2772	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 2.559426e-02	ci left: 5.328121e-01	ci right 5.466764e-01	k: 10795	n:20000
SYTL2   20000 perm   5 sec   (3845 perm/sec)   p_kst 5.397500e-01   p_cons 1.990000e-02   p_joint 1.386000e-01

Joint ci ratio: 6.334461e-02	ci left: 1.096028e-01	ci right 1.168057e-01	k: 3395	n:30000
Cons ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
KS ci ratio: 2.079526e-02	ci left: 5.365417e-01	ci right 5.478501e-01	k: 16266	n:30000
SYTL2   30000 perm   8 sec   (3734 perm/sec)   p_kst 5.422000e-01   p_cons 2.083333e-02   p_joint 1.131667e-01

Joint ci ratio: 5.886486e-02	ci left: 9.685462e-02	ci right 1.027536e-01	k: 3991	n:40000
Cons ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
KS ci ratio: 1.822910e-02	ci left: 5.312730e-01	ci right 5.410718e-01	k: 21447	n:40000
SYTL2   40000 perm   11 sec   (3644 perm/sec)   p_kst 5.361750e-01   p_cons 1.952500e-02   p_joint 9.977500e-02

Joint ci ratio: 5.079339e-02	ci left: 1.037299e-01	ci right 1.091559e-01	k: 5321	n:50000
Cons ci ratio: 1.323585e-01	ci left: 1.609782e-02	ci right 1.839872e-02	k: 861	n:50000
KS ci ratio: 1.630914e-02	ci left: 5.316568e-01	ci right 5.404190e-01	k: 26802	n:50000
SYTL2   50000 perm   14 sec   (3554 perm/sec)   p_kst 5.360400e-01   p_cons 1.722000e-02   p_joint 1.064200e-01

Joint ci ratio: 4.921248e-02	ci left: 9.327497e-02	ci right 9.799756e-02	k: 5737	n:60000
Cons ci ratio: 1.195049e-01	ci left: 1.656291e-02	ci right 1.868412e-02	k: 1056	n:60000
KS ci ratio: 1.487494e-02	ci left: 5.324832e-01	ci right 5.404799e-01	k: 32189	n:60000
SYTL2   60000 perm   17 sec   (3494 perm/sec)   p_kst 5.364833e-01   p_cons 1.760000e-02   p_joint 9.561667e-02

Joint ci ratio: 5.521951e-02	ci left: 6.529970e-02	ci right 6.902199e-02	k: 4700	n:70000
Cons ci ratio: 1.109228e-01	ci left: 1.655542e-02	ci right 1.851343e-02	k: 1226	n:70000
KS ci ratio: 1.422815e-02	ci left: 5.165197e-01	ci right 5.239358e-01	k: 36416	n:70000
SYTL2   70000 perm   20 sec   (3436 perm/sec)   p_kst 5.202286e-01   p_cons 1.751429e-02   p_joint 6.714286e-02

Joint ci ratio: 5.556169e-02	ci left: 5.694520e-02	ci right 6.021190e-02	k: 4685	n:80000
Cons ci ratio: 1.049569e-01	ci left: 1.623728e-02	ci right 1.804798e-02	k: 1370	n:80000
KS ci ratio: 1.330101e-02	ci left: 5.170687e-01	ci right 5.240048e-01	k: 41643	n:80000
SYTL2   80000 perm   24 sec   (3381 perm/sec)   p_kst 5.205375e-01   p_cons 1.712500e-02   p_joint 5.856250e-02

Joint ci ratio: 5.250985e-02	ci left: 5.677790e-02	ci right 5.985064e-02	k: 5247	n:90000
Cons ci ratio: 9.932772e-02	ci left: 1.616548e-02	ci right 1.786585e-02	k: 1530	n:90000
KS ci ratio: 1.252817e-02	ci left: 5.177523e-01	ci right 5.242908e-01	k: 46892	n:90000
SYTL2   90000 perm   27 sec   (3329 perm/sec)   p_kst 5.210222e-01   p_cons 1.700000e-02   p_joint 5.830000e-02

Outputting figure to mutsig2_images.part000000000170/SYTL2.4_5361_90000_0.52102_0.017_0.0583.png
                gene_name: SYTL2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 52 percent done.
TAAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
KS ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
TAAR1   10000 perm   2 sec   (5748 perm/sec)   p_kst 8.707000e-01   p_cons 9.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAAR1.4_1024_10000_0.8707_0.9676_1.png
                gene_name: TAAR1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TAAR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
TAAR9   10000 perm   2 sec   (6101 perm/sec)   p_kst 5.941000e-01   p_cons 2.539000e-01   p_joint 3.337000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR9.4_1049_10000_0.5941_0.2539_0.3337.png
                gene_name: TAAR9
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 55 percent done.
TAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.342625e-02	ci left: 4.391176e-01	ci right 4.587122e-01	k: 4489	n:10000
KS ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
TAB1   10000 perm   2 sec   (6075 perm/sec)   p_kst 4.215000e-01   p_cons 4.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAB1.4_1645_10000_0.4215_0.4489_1.png
                gene_name: TAB1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
TAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
Cons ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
TAB2   10000 perm   2 sec   (5494 perm/sec)   p_kst 8.280000e-02   p_cons 4.813000e-01   p_joint 1.386000e-01

Joint ci ratio: 5.695357e-02	ci left: 1.860174e-01	ci right 1.969724e-01	k: 3829	n:20000
Cons ci ratio: 2.864379e-02	ci left: 4.766020e-01	ci right 4.905027e-01	k: 9671	n:20000
KS ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
TAB2   20000 perm   4 sec   (4901 perm/sec)   p_kst 9.020000e-02   p_cons 4.835500e-01   p_joint 1.914500e-01

Outputting figure to mutsig2_images.part000000000170/TAB2.4_2106_20000_0.0902_0.48355_0.19145.png
                gene_name: TAB2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
TACC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
Cons ci ratio: 2.926357e-02	ci left: 6.326140e-01	ci right 6.515032e-01	k: 6421	n:10000
KS ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
TACC3   10000 perm   2 sec   (4207 perm/sec)   p_kst 4.825000e-01   p_cons 6.421000e-01   p_joint 6.327000e-01

Outputting figure to mutsig2_images.part000000000170/TACC3.4_2577_10000_0.4825_0.6421_0.6327.png
                gene_name: TACC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 59 percent done.
TAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
KS ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
TAF1A   10000 perm   2 sec   (5849 perm/sec)   p_kst 8.886000e-01   p_cons 7.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAF1A.4_1393_10000_0.8886_0.7993_1.png
                gene_name: TAF1A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
TAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
KS ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
TAF4   10000 perm   3 sec   (3738 perm/sec)   p_kst 1.809000e-01   p_cons 2.560000e-01   p_joint 2.598000e-01

Outputting figure to mutsig2_images.part000000000170/TAF4.4_3318_10000_0.1809_0.256_0.2598.png
                gene_name: TAF4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 62 percent done.
TAF5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
KS ci ratio: 2.776432e-02	ci left: 6.565580e-01	ci right 6.751452e-01	k: 6659	n:10000
TAF5L   10000 perm   2 sec   (5670 perm/sec)   p_kst 6.659000e-01   p_cons 6.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAF5L.4_1792_10000_0.6659_0.6293_1.png
                gene_name: TAF5L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SYNJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
SYNJ2   10000 perm   2 sec   (4668 perm/sec)   p_kst 3.098000e-01   p_cons 2.188000e-01   p_joint 2.714000e-01

Outputting figure to mutsig2_images.part000000000170/SYNJ2.3_4599_10000_0.3098_0.2188_0.2714.png
                gene_name: SYNJ2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 66 percent done.
SYP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
Cons ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
KS ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
SYP   10000 perm   2 sec   (6600 perm/sec)   p_kst 1.045000e-01   p_cons 7.003000e-01   p_joint 2.156000e-01

Joint ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
Cons ci ratio: 1.805922e-02	ci left: 6.956071e-01	ci right 7.083341e-01	k: 14040	n:20000
KS ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
SYP   20000 perm   3 sec   (5764 perm/sec)   p_kst 1.021000e-01   p_cons 7.020000e-01   p_joint 2.016000e-01

Outputting figure to mutsig2_images.part000000000170/SYP.3_966_20000_0.1021_0.702_0.2016.png
                gene_name: SYP
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
SYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
SYT1   10000 perm   2 sec   (5345 perm/sec)   p_kst 2.145000e-01   p_cons 5.323000e-01   p_joint 9.225000e-01

Outputting figure to mutsig2_images.part000000000170/SYT1.3_1301_10000_0.2145_0.5323_0.9225.png
                gene_name: SYT1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 69 percent done.
SYT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
Cons ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
KS ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
SYT5   10000 perm   2 sec   (6055 perm/sec)   p_kst 3.595000e-01   p_cons 8.222000e-01   p_joint 4.895000e-01

Outputting figure to mutsig2_images.part000000000170/SYT5.3_1193_10000_0.3595_0.8222_0.4895.png
                gene_name: SYT5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 70 percent done.
SYVN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
Cons ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
KS ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
SYVN1   10000 perm   2 sec   (5870 perm/sec)   p_kst 1.230000e-01   p_cons 4.529000e-01   p_joint 3.513000e-01

Joint ci ratio: 4.085156e-02	ci left: 3.087634e-01	ci right 3.216904e-01	k: 6304	n:20000
Cons ci ratio: 3.057653e-02	ci left: 4.441363e-01	ci right 4.579779e-01	k: 9021	n:20000
KS ci ratio: 7.556267e-02	ci left: 1.141006e-01	ci right 1.231106e-01	k: 2371	n:20000
SYVN1   20000 perm   4 sec   (5132 perm/sec)   p_kst 1.185500e-01   p_cons 4.510500e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000170/SYVN1.3_1914_20000_0.11855_0.45105_0.3152.png
                gene_name: SYVN1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 72 percent done.
TACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
Cons ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
KS ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
TACC1   10000 perm   2 sec   (5605 perm/sec)   p_kst 8.608000e-01   p_cons 4.886000e-01   p_joint 8.552000e-01

Outputting figure to mutsig2_images.part000000000170/TACC1.3_2470_10000_0.8608_0.4886_0.8552.png
                gene_name: TACC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 73 percent done.
TACR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
KS ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
TACR1   10000 perm   1 sec   (6863 perm/sec)   p_kst 5.324000e-01   p_cons 6.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TACR1.3_1248_10000_0.5324_0.6769_1.png
                gene_name: TACR1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
TADA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
KS ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
TADA2A   10000 perm   2 sec   (6148 perm/sec)   p_kst 9.231000e-01   p_cons 8.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TADA2A.3_1487_10000_0.9231_0.8324_1.png
                gene_name: TADA2A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TAF1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
Cons ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
KS ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
TAF1D   10000 perm   2 sec   (6285 perm/sec)   p_kst 4.450000e-01   p_cons 5.376000e-01   p_joint 6.100000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1D.3_857_10000_0.445_0.5376_0.61.png
                gene_name: TAF1D
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 78 percent done.
SYN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.346348e-02	ci left: 5.686497e-01	ci right 5.881046e-01	k: 5784	n:10000
KS ci ratio: 1.572648e-02	ci left: 8.544725e-01	ci right 8.681163e-01	k: 8614	n:10000
SYN1   10000 perm   2 sec   (5969 perm/sec)   p_kst 8.614000e-01   p_cons 5.784000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000170/SYN1.2_2170_10000_0.8614_0.5784_0.9903.png
                gene_name: SYN1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
SYNGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267935e-02	ci left: 4.476992e-01	ci right 4.673255e-01	k: 4575	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
SYNGR1   10000 perm   2 sec   (6436 perm/sec)   p_kst 7.220000e-01   p_cons 1.038000e-01   p_joint 4.575000e-01

Joint ci ratio: 4.304674e-02	ci left: 2.867474e-01	ci right 2.994129e-01	k: 5861	n:20000
Cons ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
KS ci ratio: 1.708818e-02	ci left: 7.183516e-01	ci right 7.307830e-01	k: 14492	n:20000
SYNGR1   20000 perm   3 sec   (5776 perm/sec)   p_kst 7.246000e-01   p_cons 1.013000e-01   p_joint 2.930500e-01

Outputting figure to mutsig2_images.part000000000170/SYNGR1.2_921_20000_0.7246_0.1013_0.29305.png
                gene_name: SYNGR1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 81 percent done.
SYNPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
Cons ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
KS ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
SYNPO   10000 perm   2 sec   (5112 perm/sec)   p_kst 1.318000e-01   p_cons 9.822000e-01   p_joint 6.757000e-01

Joint ci ratio: 1.525823e-02	ci left: 7.615315e-01	ci right 7.732907e-01	k: 15349	n:20000
Cons ci ratio: 4.195268e-03	ci left: 9.755056e-01	ci right 9.796540e-01	k: 19553	n:20000
KS ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
SYNPO   20000 perm   4 sec   (4537 perm/sec)   p_kst 1.305500e-01   p_cons 9.776500e-01   p_joint 7.674500e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO.2_3486_20000_0.13055_0.97765_0.76745.png
                gene_name: SYNPO
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 83 percent done.
SYNRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
SYNRG   10000 perm   2 sec   (4842 perm/sec)   p_kst 8.087000e-01   p_cons 5.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYNRG.2_4106_10000_0.8087_0.5432_1.png
                gene_name: SYNRG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SYT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
SYT12   10000 perm   2 sec   (6484 perm/sec)   p_kst 6.230000e-02   p_cons 3.200000e-03   p_joint 5.100000e-03

Joint ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
Cons ci ratio: 4.267974e-01	ci left: 3.306767e-03	ci right 5.141989e-03	k: 83	n:20000
KS ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
SYT12   20000 perm   4 sec   (5663 perm/sec)   p_kst 6.100000e-02   p_cons 4.150000e-03   p_joint 4.200000e-03

Joint ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
Cons ci ratio: 3.527233e-01	ci left: 3.378230e-03	ci right 4.853689e-03	k: 122	n:30000
KS ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
SYT12   30000 perm   6 sec   (5358 perm/sec)   p_kst 6.010000e-02   p_cons 4.066667e-03   p_joint 3.400000e-03

Joint ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
Cons ci ratio: 3.064081e-01	ci left: 3.451342e-03	ci right 4.722318e-03	k: 162	n:40000
KS ci ratio: 7.711776e-02	ci left: 5.833037e-02	ci right 6.303366e-02	k: 2426	n:40000
SYT12   40000 perm   8 sec   (5156 perm/sec)   p_kst 6.065000e-02   p_cons 4.050000e-03   p_joint 3.200000e-03

Joint ci ratio: 3.037425e-01	ci left: 2.816333e-03	ci right 3.842670e-03	k: 165	n:50000
Cons ci ratio: 2.712345e-01	ci left: 3.596140e-03	ci right 4.742604e-03	k: 207	n:50000
KS ci ratio: 6.880450e-02	ci left: 5.885872e-02	ci right 6.307243e-02	k: 3047	n:50000
SYT12   50000 perm   10 sec   (5006 perm/sec)   p_kst 6.094000e-02   p_cons 4.140000e-03   p_joint 3.300000e-03

Joint ci ratio: 2.288399e-01	ci left: 4.309840e-03	ci right 5.438871e-03	k: 291	n:60000
Cons ci ratio: 2.469081e-01	ci left: 3.667021e-03	ci right 4.715164e-03	k: 250	n:60000
KS ci ratio: 6.296201e-02	ci left: 5.876951e-02	ci right 6.260645e-02	k: 3640	n:60000
SYT12   60000 perm   12 sec   (4866 perm/sec)   p_kst 6.066667e-02   p_cons 4.166667e-03   p_joint 4.850000e-03

Joint ci ratio: 2.421874e-01	ci left: 3.277181e-03	ci right 4.193285e-03	k: 260	n:70000
Cons ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
KS ci ratio: 5.859195e-02	ci left: 5.833636e-02	ci right 6.187164e-02	k: 4206	n:70000
SYT12   70000 perm   15 sec   (4747 perm/sec)   p_kst 6.008571e-02   p_cons 4.071429e-03   p_joint 3.714286e-03

Joint ci ratio: 2.441283e-01	ci left: 2.820496e-03	ci right 3.616205e-03	k: 256	n:80000
Cons ci ratio: 2.156704e-01	ci left: 3.669020e-03	ci right 4.567529e-03	k: 328	n:80000
KS ci ratio: 5.492944e-02	ci left: 5.820365e-02	ci right 6.150336e-02	k: 4787	n:80000
SYT12   80000 perm   17 sec   (4634 perm/sec)   p_kst 5.983750e-02   p_cons 4.100000e-03   p_joint 3.200000e-03

Joint ci ratio: 2.177217e-01	ci left: 3.198215e-03	ci right 3.989867e-03	k: 322	n:90000
Cons ci ratio: 2.030952e-01	ci left: 3.703572e-03	ci right 4.551102e-03	k: 370	n:90000
KS ci ratio: 5.188284e-02	ci left: 5.809488e-02	ci right 6.120024e-02	k: 5367	n:90000
SYT12   90000 perm   20 sec   (4530 perm/sec)   p_kst 5.963333e-02   p_cons 4.111111e-03   p_joint 3.577778e-03

Joint ci ratio: 2.068062e-01	ci left: 3.209800e-03	ci right 3.959448e-03	k: 357	n:100000
Cons ci ratio: 1.911020e-01	ci left: 3.789561e-03	ci right 4.599612e-03	k: 418	n:100000
KS ci ratio: 4.904769e-02	ci left: 5.856550e-02	ci right 6.152008e-02	k: 6003	n:100000
SYT12   100000 perm   23 sec   (4433 perm/sec)   p_kst 6.003000e-02   p_cons 4.180000e-03   p_joint 3.570000e-03

Joint ci ratio: 1.897794e-01	ci left: 3.496949e-03	ci right 4.238677e-03	k: 424	n:110000
Cons ci ratio: 1.844114e-01	ci left: 3.713616e-03	ci right 4.476532e-03	k: 449	n:110000
KS ci ratio: 4.670649e-02	ci left: 5.877447e-02	ci right 6.159423e-02	k: 6619	n:110000
SYT12   110000 perm   25 sec   (4345 perm/sec)   p_kst 6.017273e-02   p_cons 4.081818e-03   p_joint 3.854545e-03

Joint ci ratio: 1.900346e-01	ci left: 3.197552e-03	ci right 3.876789e-03	k: 423	n:120000
Cons ci ratio: 1.793155e-01	ci left: 3.610934e-03	ci right 4.330030e-03	k: 475	n:120000
KS ci ratio: 4.465501e-02	ci left: 5.899263e-02	ci right 6.169533e-02	k: 7240	n:120000
SYT12   120000 perm   28 sec   (4260 perm/sec)   p_kst 6.033333e-02   p_cons 3.958333e-03   p_joint 3.525000e-03

Joint ci ratio: 1.820499e-01	ci left: 3.230290e-03	ci right 3.884471e-03	k: 461	n:130000
Cons ci ratio: 1.735811e-01	ci left: 3.568447e-03	ci right 4.253973e-03	k: 507	n:130000
KS ci ratio: 4.282599e-02	ci left: 5.924805e-02	ci right 6.184852e-02	k: 7870	n:130000
SYT12   130000 perm   31 sec   (4178 perm/sec)   p_kst 6.053846e-02   p_cons 3.900000e-03   p_joint 3.546154e-03

Joint ci ratio: 1.532787e-01	ci left: 4.293482e-03	ci right 5.012985e-03	k: 650	n:140000
Cons ci ratio: 1.659140e-01	ci left: 3.641866e-03	ci right 4.307508e-03	k: 555	n:140000
KS ci ratio: 4.130309e-02	ci left: 5.920010e-02	ci right 6.170386e-02	k: 8462	n:140000
SYT12   140000 perm   34 sec   (4097 perm/sec)   p_kst 6.044286e-02   p_cons 3.964286e-03   p_joint 4.642857e-03

Joint ci ratio: 1.625944e-01	ci left: 3.546091e-03	ci right 4.179991e-03	k: 578	n:150000
Cons ci ratio: 1.597124e-01	ci left: 3.680465e-03	ci right 4.325607e-03	k: 599	n:150000
KS ci ratio: 3.996712e-02	ci left: 5.906091e-02	ci right 6.147612e-02	k: 9039	n:150000
SYT12   150000 perm   37 sec   (4021 perm/sec)   p_kst 6.026000e-02   p_cons 3.993333e-03   p_joint 3.853333e-03

Joint ci ratio: 1.423260e-01	ci left: 4.382802e-03	ci right 5.060337e-03	k: 754	n:160000
Cons ci ratio: 1.542783e-01	ci left: 3.708634e-03	ci right 4.334549e-03	k: 642	n:160000
KS ci ratio: 3.874864e-02	ci left: 5.895267e-02	ci right 6.128830e-02	k: 9618	n:160000
SYT12   160000 perm   40 sec   (3951 perm/sec)   p_kst 6.011250e-02   p_cons 4.012500e-03   p_joint 4.712500e-03

Joint ci ratio: 1.378339e-01	ci left: 4.408805e-03	ci right 5.067083e-03	k: 804	n:170000
Cons ci ratio: 1.494730e-01	ci left: 3.728152e-03	ci right 4.336012e-03	k: 684	n:170000
KS ci ratio: 3.764108e-02	ci left: 5.884067e-02	ci right 6.110378e-02	k: 10194	n:170000
SYT12   170000 perm   44 sec   (3886 perm/sec)   p_kst 5.996471e-02   p_cons 4.023529e-03   p_joint 4.729412e-03

Joint ci ratio: 1.491623e-01	ci left: 3.537051e-03	ci right 4.112445e-03	k: 687	n:180000
Cons ci ratio: 1.451908e-01	ci left: 3.740416e-03	ci right 4.331289e-03	k: 725	n:180000
KS ci ratio: 3.656202e-02	ci left: 5.892923e-02	ci right 6.112941e-02	k: 10804	n:180000
SYT12   180000 perm   47 sec   (3818 perm/sec)   p_kst 6.002222e-02   p_cons 4.027778e-03   p_joint 3.816667e-03

Joint ci ratio: 1.454074e-01	ci left: 3.533381e-03	ci right 4.092452e-03	k: 723	n:190000
Cons ci ratio: 1.418147e-01	ci left: 3.721146e-03	ci right 4.294150e-03	k: 760	n:190000
KS ci ratio: 3.560060e-02	ci left: 5.891536e-02	ci right 6.105599e-02	k: 11396	n:190000
SYT12   190000 perm   51 sec   (3755 perm/sec)   p_kst 5.997895e-02   p_cons 4.000000e-03   p_joint 3.805263e-03

Joint ci ratio: 1.282423e-01	ci left: 4.351699e-03	ci right 4.952797e-03	k: 929	n:200000
Cons ci ratio: 1.384020e-01	ci left: 3.718429e-03	ci right 4.276099e-03	k: 798	n:200000
KS ci ratio: 3.475753e-02	ci left: 5.875478e-02	ci right 6.083800e-02	k: 11958	n:200000
SYT12   200000 perm   54 sec   (3694 perm/sec)   p_kst 5.979000e-02   p_cons 3.990000e-03   p_joint 4.645000e-03

Joint ci ratio: 1.104104e-01	ci left: 5.637103e-03	ci right 6.300455e-03	k: 1252	n:210000
Cons ci ratio: 1.349012e-01	ci left: 3.734526e-03	ci right 4.279306e-03	k: 840	n:210000
KS ci ratio: 3.392556e-02	ci left: 5.876121e-02	ci right 6.079382e-02	k: 12552	n:210000
SYT12   210000 perm   58 sec   (3633 perm/sec)   p_kst 5.977143e-02   p_cons 4.000000e-03   p_joint 5.961905e-03

Joint ci ratio: 1.074064e-01	ci left: 5.694817e-03	ci right 6.345575e-03	k: 1323	n:220000
Cons ci ratio: 1.309847e-01	ci left: 3.788890e-03	ci right 4.324306e-03	k: 891	n:220000
KS ci ratio: 3.308508e-02	ci left: 5.898860e-02	ci right 6.097756e-02	k: 13195	n:220000
SYT12   220000 perm   61 sec   (3577 perm/sec)   p_kst 5.997727e-02   p_cons 4.050000e-03   p_joint 6.013636e-03

Joint ci ratio: 1.052440e-01	ci left: 5.679985e-03	ci right 6.315170e-03	k: 1378	n:230000
Cons ci ratio: 1.284897e-01	ci left: 3.771389e-03	ci right 4.293406e-03	k: 926	n:230000
KS ci ratio: 3.239511e-02	ci left: 5.888179e-02	ci right 6.082497e-02	k: 13765	n:230000
SYT12   230000 perm   65 sec   (3521 perm/sec)   p_kst 5.984783e-02   p_cons 4.026087e-03   p_joint 5.991304e-03

Joint ci ratio: 1.028827e-01	ci left: 5.703048e-03	ci right 6.325639e-03	k: 1442	n:240000
Cons ci ratio: 1.256087e-01	ci left: 3.787722e-03	ci right 4.299370e-03	k: 969	n:240000
KS ci ratio: 3.170308e-02	ci left: 5.893731e-02	ci right 6.084001e-02	k: 14372	n:240000
SYT12   240000 perm   69 sec   (3468 perm/sec)   p_kst 5.988333e-02   p_cons 4.037500e-03   p_joint 6.008333e-03

Joint ci ratio: 1.007409e-01	ci left: 5.716613e-03	ci right 6.326924e-03	k: 1504	n:250000
Cons ci ratio: 1.234652e-01	ci left: 3.767974e-03	ci right 4.267633e-03	k: 1003	n:250000
KS ci ratio: 3.107566e-02	ci left: 5.890937e-02	ci right 6.077285e-02	k: 14959	n:250000
SYT12   250000 perm   73 sec   (3416 perm/sec)   p_kst 5.983600e-02   p_cons 4.012000e-03   p_joint 6.016000e-03

Joint ci ratio: 9.872748e-02	ci left: 5.729259e-03	ci right 6.327987e-03	k: 1566	n:260000
Cons ci ratio: 1.212519e-01	ci left: 3.761003e-03	ci right 4.250155e-03	k: 1040	n:260000
KS ci ratio: 3.049242e-02	ci left: 5.885337e-02	ci right 6.067953e-02	k: 15538	n:260000
SYT12   260000 perm   77 sec   (3366 perm/sec)   p_kst 5.976154e-02   p_cons 4.000000e-03   p_joint 6.023077e-03

Joint ci ratio: 9.743373e-02	ci left: 5.668795e-03	ci right 6.252997e-03	k: 1608	n:270000
Cons ci ratio: 1.193204e-01	ci left: 3.743842e-03	ci right 4.222458e-03	k: 1074	n:270000
KS ci ratio: 2.998339e-02	ci left: 5.864369e-02	ci right 6.043244e-02	k: 16074	n:270000
SYT12   270000 perm   81 sec   (3316 perm/sec)   p_kst 5.953333e-02   p_cons 3.977778e-03   p_joint 5.955556e-03

Joint ci ratio: 1.078863e-01	ci left: 4.439591e-03	ci right 4.949316e-03	k: 1313	n:280000
Cons ci ratio: 1.166366e-01	ci left: 3.783439e-03	ci right 4.255489e-03	k: 1124	n:280000
KS ci ratio: 2.942094e-02	ci left: 5.874361e-02	ci right 6.050123e-02	k: 16693	n:280000
SYT12   280000 perm   86 sec   (3268 perm/sec)   p_kst 5.961786e-02   p_cons 4.014286e-03   p_joint 4.689286e-03

Joint ci ratio: 1.182379e-01	ci left: 3.552541e-03	ci right 4.002293e-03	k: 1094	n:290000
Cons ci ratio: 1.148645e-01	ci left: 3.770170e-03	ci right 4.232933e-03	k: 1159	n:290000
KS ci ratio: 2.886595e-02	ci left: 5.892598e-02	ci right 6.065524e-02	k: 17338	n:290000
SYT12   290000 perm   90 sec   (3221 perm/sec)   p_kst 5.978621e-02   p_cons 3.996552e-03   p_joint 3.772414e-03

Joint ci ratio: 1.159816e-01	ci left: 3.573260e-03	ci right 4.016410e-03	k: 1137	n:300000
Cons ci ratio: 1.126984e-01	ci left: 3.790230e-03	ci right 4.246100e-03	k: 1204	n:300000
KS ci ratio: 2.836724e-02	ci left: 5.899383e-02	ci right 6.069469e-02	k: 17952	n:300000
SYT12   300000 perm   95 sec   (3174 perm/sec)   p_kst 5.984000e-02   p_cons 4.013333e-03   p_joint 3.790000e-03

Joint ci ratio: 1.137047e-01	ci left: 3.602121e-03	ci right 4.039493e-03	k: 1183	n:310000
Cons ci ratio: 1.107840e-01	ci left: 3.799663e-03	ci right 4.248396e-03	k: 1246	n:310000
KS ci ratio: 2.789750e-02	ci left: 5.904152e-02	ci right 6.071511e-02	k: 18561	n:310000
SYT12   310000 perm   99 sec   (3131 perm/sec)   p_kst 5.987419e-02   p_cons 4.019355e-03   p_joint 3.816129e-03

Joint ci ratio: 1.123854e-01	ci left: 3.574578e-03	ci right 4.003235e-03	k: 1211	n:320000
Cons ci ratio: 1.090488e-01	ci left: 3.802487e-03	ci right 4.244069e-03	k: 1286	n:320000
KS ci ratio: 2.744426e-02	ci left: 5.911128e-02	ci right 6.075920e-02	k: 19178	n:320000
SYT12   320000 perm   104 sec   (3089 perm/sec)   p_kst 5.993125e-02   p_cons 4.018750e-03   p_joint 3.784375e-03

Joint ci ratio: 1.104867e-01	ci left: 3.589984e-03	ci right 4.012742e-03	k: 1253	n:330000
Cons ci ratio: 1.072711e-01	ci left: 3.814040e-03	ci right 4.249286e-03	k: 1329	n:330000
KS ci ratio: 2.705096e-02	ci left: 5.901744e-02	ci right 6.063879e-02	k: 19742	n:330000
SYT12   330000 perm   108 sec   (3048 perm/sec)   p_kst 5.982424e-02   p_cons 4.027273e-03   p_joint 3.796970e-03

Joint ci ratio: 1.088075e-01	ci left: 3.595957e-03	ci right 4.012570e-03	k: 1292	n:340000
Cons ci ratio: 1.056162e-01	ci left: 3.822104e-03	ci right 4.251123e-03	k: 1371	n:340000
KS ci ratio: 2.668108e-02	ci left: 5.890004e-02	ci right 6.049571e-02	k: 20296	n:340000
SYT12   340000 perm   113 sec   (3008 perm/sec)   p_kst 5.969412e-02   p_cons 4.032353e-03   p_joint 3.800000e-03

Joint ci ratio: 1.175783e-01	ci left: 2.979530e-03	ci right 3.354485e-03	k: 1107	n:350000
Cons ci ratio: 1.041465e-01	ci left: 3.821406e-03	ci right 4.244013e-03	k: 1410	n:350000
KS ci ratio: 2.628845e-02	ci left: 5.894852e-02	ci right 6.052164e-02	k: 20906	n:350000
SYT12   350000 perm   118 sec   (2968 perm/sec)   p_kst 5.973143e-02   p_cons 4.028571e-03   p_joint 3.162857e-03

Joint ci ratio: 1.160696e-01	ci left: 2.974966e-03	ci right 3.344214e-03	k: 1136	n:360000
Cons ci ratio: 1.026300e-01	ci left: 3.828907e-03	ci right 4.245806e-03	k: 1452	n:360000
KS ci ratio: 2.595502e-02	ci left: 5.881224e-02	ci right 6.036152e-02	k: 21450	n:360000
SYT12   360000 perm   123 sec   (2932 perm/sec)   p_kst 5.958333e-02   p_cons 4.033333e-03   p_joint 3.155556e-03

Joint ci ratio: 1.150638e-01	ci left: 2.947051e-03	ci right 3.309449e-03	k: 1156	n:370000
Cons ci ratio: 1.013141e-01	ci left: 3.825506e-03	ci right 4.236376e-03	k: 1490	n:370000
KS ci ratio: 2.561476e-02	ci left: 5.876674e-02	ci right 6.029422e-02	k: 22025	n:370000
SYT12   370000 perm   128 sec   (2895 perm/sec)   p_kst 5.952703e-02   p_cons 4.027027e-03   p_joint 3.124324e-03

Joint ci ratio: 1.136487e-01	ci left: 2.943629e-03	ci right 3.300856e-03	k: 1185	n:380000
Cons ci ratio: 9.965562e-02	ci left: 3.853109e-03	ci right 4.259774e-03	k: 1540	n:380000
KS ci ratio: 2.529587e-02	ci left: 5.868713e-02	ci right 6.019328e-02	k: 22586	n:380000
SYT12   380000 perm   133 sec   (2860 perm/sec)   p_kst 5.943684e-02   p_cons 4.052632e-03   p_joint 3.118421e-03

Joint ci ratio: 1.119614e-01	ci left: 2.957856e-03	ci right 3.311129e-03	k: 1221	n:390000
Cons ci ratio: 9.848081e-02	ci left: 3.846832e-03	ci right 4.247771e-03	k: 1577	n:390000
KS ci ratio: 2.496110e-02	ci left: 5.873407e-02	ci right 6.022120e-02	k: 23195	n:390000
SYT12   390000 perm   138 sec   (2825 perm/sec)   p_kst 5.947436e-02   p_cons 4.043590e-03   p_joint 3.130769e-03

Joint ci ratio: 1.107453e-01	ci left: 2.949529e-03	ci right 3.297730e-03	k: 1248	n:400000
Cons ci ratio: 9.722578e-02	ci left: 3.850653e-03	ci right 4.246584e-03	k: 1618	n:400000
KS ci ratio: 2.461345e-02	ci left: 5.889562e-02	ci right 6.036577e-02	k: 23851	n:400000
SYT12   400000 perm   143 sec   (2789 perm/sec)   p_kst 5.962750e-02   p_cons 4.045000e-03   p_joint 3.120000e-03

Joint ci ratio: 1.000295e-01	ci left: 3.544987e-03	ci right 3.920617e-03	k: 1529	n:410000
Cons ci ratio: 9.639726e-02	ci left: 3.823371e-03	ci right 4.212958e-03	k: 1646	n:410000
KS ci ratio: 2.429786e-02	ci left: 5.896696e-02	ci right 6.041976e-02	k: 24473	n:410000
SYT12   410000 perm   149 sec   (2750 perm/sec)   p_kst 5.969024e-02   p_cons 4.014634e-03   p_joint 3.729268e-03

Joint ci ratio: 1.083856e-01	ci left: 2.936438e-03	ci right 3.275236e-03	k: 1303	n:420000
Cons ci ratio: 9.544663e-02	ci left: 3.809024e-03	ci right 4.193107e-03	k: 1679	n:420000
KS ci ratio: 2.400275e-02	ci left: 5.899477e-02	ci right 6.043036e-02	k: 25078	n:420000
SYT12   420000 perm   155 sec   (2713 perm/sec)   p_kst 5.970952e-02   p_cons 3.997619e-03   p_joint 3.102381e-03

Joint ci ratio: 1.073621e-01	ci left: 2.924719e-03	ci right 3.258777e-03	k: 1328	n:430000
Cons ci ratio: 9.446821e-02	ci left: 3.799903e-03	ci right 4.178922e-03	k: 1714	n:430000
KS ci ratio: 2.373288e-02	ci left: 5.895201e-02	ci right 6.037021e-02	k: 25653	n:430000
SYT12   430000 perm   161 sec   (2676 perm/sec)   p_kst 5.965814e-02   p_cons 3.986047e-03   p_joint 3.088372e-03

Joint ci ratio: 9.691385e-02	ci left: 3.524958e-03	ci right 3.886171e-03	k: 1629	n:440000
Cons ci ratio: 9.341216e-02	ci left: 3.800096e-03	ci right 4.174664e-03	k: 1753	n:440000
KS ci ratio: 2.345907e-02	ci left: 5.897231e-02	ci right 6.037440e-02	k: 26255	n:440000
SYT12   440000 perm   166 sec   (2643 perm/sec)   p_kst 5.967045e-02   p_cons 3.984091e-03   p_joint 3.702273e-03

Outputting figure to mutsig2_images.part000000000170/SYT12.2_1294_440000_0.05967_0.0039841_0.0037023.png
                gene_name: SYT12
               theta_stop: 0.097 
                    nperm: 440000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.0040 
      ci_cons_bounds_left: 0.0038 
     ci_cons_bounds_right: 0.0042 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0039 

Current progress: 86 percent done.
SYT15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
SYT15   10000 perm   2 sec   (6482 perm/sec)   p_kst 8.587000e-01   p_cons 4.379000e-01   p_joint 8.295000e-01

Outputting figure to mutsig2_images.part000000000170/SYT15.2_1352_10000_0.8587_0.4379_0.8295.png
                gene_name: SYT15
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 88 percent done.
SYT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
KS ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
SYT2   10000 perm   2 sec   (6462 perm/sec)   p_kst 1.099000e-01   p_cons 5.764000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.379976e-02	ci left: 5.687146e-01	ci right 5.824634e-01	k: 11512	n:20000
KS ci ratio: 7.906498e-02	ci left: 1.051060e-01	ci right 1.138079e-01	k: 2188	n:20000
SYT2   20000 perm   4 sec   (5679 perm/sec)   p_kst 1.094000e-01   p_cons 5.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYT2.2_1292_20000_0.1094_0.5756_1.png
                gene_name: SYT2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SYTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
Cons ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
KS ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
SYTL1   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.800000e-02   p_cons 1.800000e-03   p_joint 2.550000e-02

Joint ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
Cons ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
KS ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
SYTL1   20000 perm   4 sec   (5238 perm/sec)   p_kst 4.055000e-02   p_cons 9.500000e-04   p_joint 1.300000e-03

Joint ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
Cons ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
KS ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
SYTL1   30000 perm   6 sec   (5051 perm/sec)   p_kst 4.056667e-02   p_cons 7.333333e-04   p_joint 1.966667e-03

Joint ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
Cons ci ratio: 6.926788e-01	ci left: 5.266337e-04	ci right 1.099872e-03	k: 31	n:40000
KS ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
SYTL1   40000 perm   8 sec   (4830 perm/sec)   p_kst 4.080000e-02   p_cons 7.750000e-04   p_joint 1.275000e-03

Joint ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
Cons ci ratio: 5.975313e-01	ci left: 6.054631e-04	ci right 1.135268e-03	k: 42	n:50000
KS ci ratio: 8.510932e-02	ci left: 3.896516e-02	ci right 4.244842e-02	k: 2034	n:50000
SYTL1   50000 perm   11 sec   (4708 perm/sec)   p_kst 4.068000e-02   p_cons 8.400000e-04   p_joint 9.600000e-04

Joint ci ratio: 5.144681e-01	ci left: 7.195977e-04	ci right 1.230662e-03	k: 57	n:60000
Cons ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
KS ci ratio: 7.754510e-02	ci left: 3.926371e-02	ci right 4.244756e-02	k: 2450	n:60000
SYTL1   60000 perm   13 sec   (4617 perm/sec)   p_kst 4.083333e-02   p_cons 9.166667e-04   p_joint 9.500000e-04

Joint ci ratio: 5.487059e-01	ci left: 5.302017e-04	ci right 9.415896e-04	k: 50	n:70000
Cons ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
KS ci ratio: 7.170796e-02	ci left: 3.947278e-02	ci right 4.242257e-02	k: 2865	n:70000
SYTL1   70000 perm   15 sec   (4528 perm/sec)   p_kst 4.092857e-02   p_cons 8.714286e-04   p_joint 7.142857e-04

Joint ci ratio: 5.332610e-01	ci left: 4.962961e-04	ci right 8.664779e-04	k: 53	n:80000
Cons ci ratio: 4.683217e-01	ci left: 6.711365e-04	ci right 1.091424e-03	k: 69	n:80000
KS ci ratio: 6.691104e-02	ci left: 3.975935e-02	ci right 4.252405e-02	k: 3290	n:80000
SYTL1   80000 perm   18 sec   (4443 perm/sec)   p_kst 4.112500e-02   p_cons 8.625000e-04   p_joint 6.625000e-04

Joint ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
Cons ci ratio: 4.380721e-01	ci left: 6.950046e-04	ci right 1.093855e-03	k: 79	n:90000
KS ci ratio: 6.297249e-02	ci left: 3.997642e-02	ci right 4.258659e-02	k: 3714	n:90000
SYTL1   90000 perm   21 sec   (4359 perm/sec)   p_kst 4.126667e-02   p_cons 8.777778e-04   p_joint 5.666667e-04

Joint ci ratio: 4.683633e-01	ci left: 5.368996e-04	ci right 8.731591e-04	k: 69	n:100000
Cons ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
KS ci ratio: 5.989839e-02	ci left: 3.983847e-02	ci right 4.230824e-02	k: 4106	n:100000
SYTL1   100000 perm   23 sec   (4277 perm/sec)   p_kst 4.106000e-02   p_cons 8.800000e-04   p_joint 6.900000e-04

Joint ci ratio: 4.524862e-01	ci left: 5.282714e-04	ci right 8.444749e-04	k: 74	n:110000
Cons ci ratio: 3.958016e-01	ci left: 7.151515e-04	ci right 1.075639e-03	k: 97	n:110000
KS ci ratio: 5.744789e-02	ci left: 3.944127e-02	ci right 4.178303e-02	k: 4466	n:110000
SYTL1   110000 perm   26 sec   (4178 perm/sec)   p_kst 4.060000e-02   p_cons 8.818182e-04   p_joint 6.727273e-04

Joint ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
Cons ci ratio: 3.805743e-01	ci left: 7.157174e-04	ci right 1.059143e-03	k: 105	n:120000
KS ci ratio: 5.498508e-02	ci left: 3.951496e-02	ci right 4.175731e-02	k: 4875	n:120000
SYTL1   120000 perm   29 sec   (4072 perm/sec)   p_kst 4.062500e-02   p_cons 8.750000e-04   p_joint 5.416667e-04

Joint ci ratio: 4.177303e-01	ci left: 5.360601e-04	ci right 8.254292e-04	k: 87	n:130000
Cons ci ratio: 3.653788e-01	ci left: 7.234062e-04	ci right 1.053359e-03	k: 114	n:130000
KS ci ratio: 5.266365e-02	ci left: 3.979939e-02	ci right 4.195962e-02	k: 5313	n:130000
SYTL1   130000 perm   32 sec   (4002 perm/sec)   p_kst 4.086923e-02   p_cons 8.769231e-04   p_joint 6.692308e-04

Joint ci ratio: 4.107926e-01	ci left: 5.169638e-04	ci right 7.901224e-04	k: 90	n:140000
Cons ci ratio: 3.607119e-01	ci left: 6.912060e-04	ci right 1.001499e-03	k: 117	n:140000
KS ci ratio: 5.074691e-02	ci left: 3.984025e-02	ci right 4.192168e-02	k: 5722	n:140000
SYTL1   140000 perm   36 sec   (3937 perm/sec)   p_kst 4.087143e-02   p_cons 8.357143e-04   p_joint 6.428571e-04

Joint ci ratio: 3.918680e-01	ci left: 5.364468e-04	ci right 8.034686e-04	k: 99	n:150000
Cons ci ratio: 3.449872e-01	ci left: 7.119635e-04	ci right 1.014534e-03	k: 128	n:150000
KS ci ratio: 4.903779e-02	ci left: 3.985713e-02	ci right 4.186733e-02	k: 6128	n:150000
SYTL1   150000 perm   39 sec   (3866 perm/sec)   p_kst 4.085333e-02   p_cons 8.533333e-04   p_joint 6.600000e-04

Joint ci ratio: 5.977122e-01	ci left: 1.891933e-04	ci right 3.548074e-04	k: 42	n:160000
Cons ci ratio: 3.347637e-01	ci left: 7.131995e-04	ci right 1.005377e-03	k: 136	n:160000
KS ci ratio: 4.745266e-02	ci left: 3.993473e-02	ci right 4.188195e-02	k: 6544	n:160000
SYTL1   160000 perm   42 sec   (3802 perm/sec)   p_kst 4.090000e-02   p_cons 8.500000e-04   p_joint 2.625000e-04

Joint ci ratio: 3.899375e-01	ci left: 4.786365e-04	ci right 7.154062e-04	k: 100	n:170000
Cons ci ratio: 3.253985e-01	ci left: 7.144066e-04	ci right 9.971811e-04	k: 144	n:170000
KS ci ratio: 4.603606e-02	ci left: 3.996340e-02	ci right 4.185230e-02	k: 6953	n:170000
SYTL1   170000 perm   45 sec   (3740 perm/sec)   p_kst 4.090000e-02   p_cons 8.470588e-04   p_joint 5.882353e-04

Joint ci ratio: 5.717145e-01	ci left: 1.871047e-04	ci right 3.408608e-04	k: 46	n:180000
Cons ci ratio: 3.167776e-01	ci left: 7.155807e-04	ci right 9.897960e-04	k: 152	n:180000
KS ci ratio: 4.483134e-02	ci left: 3.983027e-02	ci right 4.166233e-02	k: 7333	n:180000
SYTL1   180000 perm   49 sec   (3680 perm/sec)   p_kst 4.073889e-02   p_cons 8.444444e-04   p_joint 2.555556e-04

Joint ci ratio: 3.311775e-01	ci left: 6.150531e-04	ci right 8.637469e-04	k: 139	n:190000
Cons ci ratio: 3.050382e-01	ci left: 7.361520e-04	ci right 1.005768e-03	k: 164	n:190000
KS ci ratio: 4.350236e-02	ci left: 4.009194e-02	ci right 4.188000e-02	k: 7786	n:190000
SYTL1   190000 perm   53 sec   (3611 perm/sec)   p_kst 4.097895e-02   p_cons 8.631579e-04   p_joint 7.315789e-04

Joint ci ratio: 3.300063e-01	ci left: 5.888841e-04	ci right 8.259754e-04	k: 140	n:200000
Cons ci ratio: 2.979024e-01	ci left: 7.363195e-04	ci right 9.984958e-04	k: 172	n:200000
KS ci ratio: 4.249241e-02	ci left: 3.994706e-02	ci right 4.168628e-02	k: 8162	n:200000
SYTL1   200000 perm   56 sec   (3557 perm/sec)   p_kst 4.081000e-02   p_cons 8.600000e-04   p_joint 7.000000e-04

Joint ci ratio: 3.372706e-01	ci left: 5.346609e-04	ci right 7.556917e-04	k: 134	n:210000
Cons ci ratio: 2.904431e-01	ci left: 7.409522e-04	ci right 9.969584e-04	k: 181	n:210000
KS ci ratio: 4.152685e-02	ci left: 3.985885e-02	ci right 4.155385e-02	k: 8547	n:210000
SYTL1   210000 perm   60 sec   (3502 perm/sec)   p_kst 4.070000e-02   p_cons 8.619048e-04   p_joint 6.380952e-04

Joint ci ratio: 3.410891e-01	ci left: 4.978814e-04	ci right 7.065515e-04	k: 131	n:220000
Cons ci ratio: 2.835174e-01	ci left: 7.452380e-04	ci right 9.954871e-04	k: 190	n:220000
KS ci ratio: 4.057929e-02	ci left: 3.986460e-02	ci right 4.152026e-02	k: 8951	n:220000
SYTL1   220000 perm   64 sec   (3450 perm/sec)   p_kst 4.068636e-02   p_cons 8.636364e-04   p_joint 5.954545e-04

Joint ci ratio: 2.896588e-01	ci left: 6.805499e-04	ci right 9.149346e-04	k: 182	n:230000
Cons ci ratio: 2.770647e-01	ci left: 7.492170e-04	ci right 9.940783e-04	k: 199	n:230000
KS ci ratio: 3.962098e-02	ci left: 4.001236e-02	ci right 4.163402e-02	k: 9388	n:230000
SYTL1   230000 perm   68 sec   (3399 perm/sec)   p_kst 4.081739e-02   p_cons 8.652174e-04   p_joint 7.913043e-04

Joint ci ratio: 2.827879e-01	ci left: 6.870026e-04	ci right 9.169963e-04	k: 191	n:240000
Cons ci ratio: 2.672215e-01	ci left: 7.762381e-04	ci right 1.019409e-03	k: 214	n:240000
KS ci ratio: 3.879340e-02	ci left: 4.001614e-02	ci right 4.160331e-02	k: 9793	n:240000
SYTL1   240000 perm   72 sec   (3345 perm/sec)   p_kst 4.080417e-02   p_cons 8.916667e-04   p_joint 7.958333e-04

Joint ci ratio: 2.004110e-01	ci left: 1.374895e-03	ci right 1.684846e-03	k: 381	n:250000
Cons ci ratio: 2.612152e-01	ci left: 7.825399e-04	ci right 1.021275e-03	k: 224	n:250000
KS ci ratio: 3.803505e-02	ci left: 3.998030e-02	ci right 4.153437e-02	k: 10188	n:250000
SYTL1   250000 perm   76 sec   (3299 perm/sec)   p_kst 4.075200e-02   p_cons 8.960000e-04   p_joint 1.524000e-03

Joint ci ratio: 2.684834e-01	ci left: 7.093483e-04	ci right 9.327906e-04	k: 212	n:260000
Cons ci ratio: 2.561426e-01	ci left: 7.848136e-04	ci right 1.018850e-03	k: 233	n:260000
KS ci ratio: 3.733238e-02	ci left: 3.992082e-02	ci right 4.144329e-02	k: 10576	n:260000
SYTL1   260000 perm   80 sec   (3251 perm/sec)   p_kst 4.067692e-02   p_cons 8.961538e-04   p_joint 8.153846e-04

Joint ci ratio: 2.629845e-01	ci left: 7.141894e-04	ci right 9.337910e-04	k: 221	n:270000
Cons ci ratio: 2.523962e-01	ci left: 7.800200e-04	ci right 1.008690e-03	k: 240	n:270000
KS ci ratio: 3.665506e-02	ci left: 3.989168e-02	ci right 4.138486e-02	k: 10971	n:270000
SYTL1   270000 perm   84 sec   (3207 perm/sec)   p_kst 4.063333e-02   p_cons 8.888889e-04   p_joint 8.185185e-04

Joint ci ratio: 2.595022e-01	ci left: 7.087078e-04	ci right 9.232704e-04	k: 227	n:280000
Cons ci ratio: 2.478114e-01	ci left: 7.822907e-04	ci right 1.006819e-03	k: 249	n:280000
KS ci ratio: 3.597375e-02	ci left: 3.994984e-02	ci right 4.141683e-02	k: 11390	n:280000
SYTL1   280000 perm   89 sec   (3163 perm/sec)   p_kst 4.067857e-02   p_cons 8.892857e-04   p_joint 8.107143e-04

Joint ci ratio: 2.416075e-01	ci left: 7.973951e-04	ci right 1.019670e-03	k: 262	n:290000
Cons ci ratio: 2.434677e-01	ci left: 7.844396e-04	ci right 1.005041e-03	k: 258	n:290000
KS ci ratio: 3.531193e-02	ci left: 4.004184e-02	ci right 4.148460e-02	k: 11820	n:290000
SYTL1   290000 perm   93 sec   (3119 perm/sec)   p_kst 4.075862e-02   p_cons 8.896552e-04   p_joint 9.034483e-04

Joint ci ratio: 2.388990e-01	ci left: 7.896110e-04	ci right 1.006884e-03	k: 268	n:300000
Cons ci ratio: 2.380151e-01	ci left: 7.958797e-04	ci right 1.013947e-03	k: 270	n:300000
KS ci ratio: 3.471637e-02	ci left: 4.005851e-02	ci right 4.147705e-02	k: 12229	n:300000
SYTL1   300000 perm   97 sec   (3078 perm/sec)   p_kst 4.076333e-02   p_cons 9.000000e-04   p_joint 8.933333e-04

Joint ci ratio: 2.358508e-01	ci left: 7.853772e-04	ci right 9.983249e-04	k: 275	n:310000
Cons ci ratio: 2.354243e-01	ci left: 7.884127e-04	ci right 1.001741e-03	k: 276	n:310000
KS ci ratio: 3.416546e-02	ci left: 4.003911e-02	ci right 4.143401e-02	k: 12627	n:310000
SYTL1   310000 perm   102 sec   (3029 perm/sec)   p_kst 4.073226e-02   p_cons 8.903226e-04   p_joint 8.870968e-04

Joint ci ratio: 2.420789e-01	ci left: 7.197001e-04	ci right 9.207674e-04	k: 261	n:320000
Cons ci ratio: 2.316905e-01	ci left: 7.902544e-04	ci right 1.000204e-03	k: 285	n:320000
KS ci ratio: 3.360369e-02	ci left: 4.010478e-02	ci right 4.147855e-02	k: 13052	n:320000
SYTL1   320000 perm   107 sec   (2992 perm/sec)   p_kst 4.078750e-02   p_cons 8.906250e-04   p_joint 8.156250e-04

Joint ci ratio: 2.285168e-01	ci left: 7.891523e-04	ci right 9.955321e-04	k: 293	n:330000
Cons ci ratio: 2.285168e-01	ci left: 7.891523e-04	ci right 9.955321e-04	k: 293	n:330000
KS ci ratio: 3.309435e-02	ci left: 4.010652e-02	ci right 4.145914e-02	k: 13457	n:330000
SYTL1   330000 perm   112 sec   (2954 perm/sec)   p_kst 4.077879e-02   p_cons 8.878788e-04   p_joint 8.878788e-04

Joint ci ratio: 2.250974e-01	ci left: 7.909087e-04	ci right 9.942236e-04	k: 302	n:340000
Cons ci ratio: 2.258447e-01	ci left: 7.853584e-04	ci right 9.880099e-04	k: 300	n:340000
KS ci ratio: 3.256344e-02	ci left: 4.021336e-02	ci right 4.154742e-02	k: 13898	n:340000
SYTL1   340000 perm   117 sec   (2917 perm/sec)   p_kst 4.087647e-02   p_cons 8.823529e-04   p_joint 8.882353e-04

Joint ci ratio: 2.232641e-01	ci left: 7.817944e-04	ci right 9.809044e-04	k: 307	n:350000
Cons ci ratio: 2.239932e-01	ci left: 7.764000e-04	ci right 9.748709e-04	k: 305	n:350000
KS ci ratio: 3.212860e-02	ci left: 4.014132e-02	ci right 4.145487e-02	k: 14278	n:350000
SYTL1   350000 perm   122 sec   (2881 perm/sec)   p_kst 4.079429e-02   p_cons 8.714286e-04   p_joint 8.771429e-04

Joint ci ratio: 2.572773e-01	ci left: 5.616031e-04	ci right 7.299368e-04	k: 231	n:360000
Cons ci ratio: 2.214749e-01	ci left: 7.731929e-04	ci right 9.683189e-04	k: 312	n:360000
KS ci ratio: 3.165561e-02	ci left: 4.020847e-02	ci right 4.150449e-02	k: 14707	n:360000
SYTL1   360000 perm   127 sec   (2844 perm/sec)   p_kst 4.085278e-02   p_cons 8.666667e-04   p_joint 6.416667e-04

Joint ci ratio: 2.778063e-01	ci left: 4.632049e-04	ci right 6.150655e-04	k: 198	n:370000
Cons ci ratio: 2.197279e-01	ci left: 7.650622e-04	ci right 9.564076e-04	k: 317	n:370000
KS ci ratio: 3.119324e-02	ci left: 4.029626e-02	ci right 4.157581e-02	k: 15145	n:370000
SYTL1   370000 perm   132 sec   (2809 perm/sec)   p_kst 4.093243e-02   p_cons 8.567568e-04   p_joint 5.351351e-04

Joint ci ratio: 2.764220e-01	ci left: 4.559125e-04	ci right 6.045079e-04	k: 200	n:380000
Cons ci ratio: 2.183602e-01	ci left: 7.548774e-04	ci right 9.423426e-04	k: 321	n:380000
KS ci ratio: 3.083318e-02	ci left: 4.017059e-02	ci right 4.143116e-02	k: 15503	n:380000
SYTL1   380000 perm   137 sec   (2774 perm/sec)   p_kst 4.079737e-02   p_cons 8.447368e-04   p_joint 5.263158e-04

Joint ci ratio: 2.723862e-01	ci left: 4.585488e-04	ci right 6.054480e-04	k: 206	n:390000
Cons ci ratio: 2.166853e-01	ci left: 7.476433e-04	ci right 9.316983e-04	k: 326	n:390000
KS ci ratio: 3.039749e-02	ci left: 4.027544e-02	ci right 4.152113e-02	k: 15949	n:390000
SYTL1   390000 perm   142 sec   (2742 perm/sec)   p_kst 4.089487e-02   p_cons 8.358974e-04   p_joint 5.282051e-04

Joint ci ratio: 2.070854e-01	ci left: 8.023443e-04	ci right 9.900070e-04	k: 357	n:400000
Cons ci ratio: 2.115691e-01	ci left: 7.668083e-04	ci right 9.505463e-04	k: 342	n:400000
KS ci ratio: 3.001892e-02	ci left: 4.027341e-02	ci right 4.150326e-02	k: 16354	n:400000
SYTL1   400000 perm   148 sec   (2705 perm/sec)   p_kst 4.088500e-02   p_cons 8.550000e-04   p_joint 8.925000e-04

Joint ci ratio: 1.932622e-01	ci left: 9.055764e-04	ci right 1.101586e-03	k: 410	n:410000
Cons ci ratio: 2.070877e-01	ci left: 7.827740e-04	ci right 9.658617e-04	k: 357	n:410000
KS ci ratio: 2.964493e-02	ci left: 4.029578e-02	ci right 4.151072e-02	k: 16769	n:410000
SYTL1   410000 perm   153 sec   (2672 perm/sec)   p_kst 4.090000e-02   p_cons 8.707317e-04   p_joint 1.000000e-03

Joint ci ratio: 1.914088e-01	ci left: 9.021453e-04	ci right 1.095321e-03	k: 418	n:420000
Cons ci ratio: 2.039771e-01	ci left: 7.889794e-04	ci right 9.704012e-04	k: 368	n:420000
KS ci ratio: 2.928902e-02	ci left: 4.030536e-02	ci right 4.150575e-02	k: 17179	n:420000
SYTL1   420000 perm   159 sec   (2637 perm/sec)   p_kst 4.090238e-02   p_cons 8.761905e-04   p_joint 9.952381e-04

Joint ci ratio: 1.896077e-01	ci left: 8.988824e-04	ci right 1.089340e-03	k: 426	n:430000
Cons ci ratio: 1.996920e-01	ci left: 8.059608e-04	ci right 9.869199e-04	k: 384	n:430000
KS ci ratio: 2.896366e-02	ci left: 4.026607e-02	ci right 4.145175e-02	k: 17568	n:430000
SYTL1   430000 perm   165 sec   (2606 perm/sec)   p_kst 4.085581e-02   p_cons 8.930233e-04   p_joint 9.906977e-04

Joint ci ratio: 1.930339e-01	ci left: 8.459928e-04	ci right 1.028864e-03	k: 411	n:440000
Cons ci ratio: 1.971478e-01	ci left: 8.092419e-04	ci right 9.883446e-04	k: 394	n:440000
KS ci ratio: 2.865224e-02	ci left: 4.021962e-02	ci right 4.139099e-02	k: 17953	n:440000
SYTL1   440000 perm   171 sec   (2577 perm/sec)   p_kst 4.080227e-02   p_cons 8.954545e-04   p_joint 9.340909e-04

Joint ci ratio: 1.909595e-01	ci left: 8.462316e-04	ci right 1.026960e-03	k: 420	n:450000
Cons ci ratio: 1.956680e-01	ci left: 8.039362e-04	ci right 9.803699e-04	k: 400	n:450000
KS ci ratio: 2.833615e-02	ci left: 4.021502e-02	ci right 4.137312e-02	k: 18356	n:450000
SYTL1   450000 perm   177 sec   (2547 perm/sec)   p_kst 4.079111e-02   p_cons 8.888889e-04   p_joint 9.333333e-04

Joint ci ratio: 1.880770e-01	ci left: 8.547558e-04	ci right 1.034235e-03	k: 433	n:460000
Cons ci ratio: 1.932727e-01	ci left: 8.071401e-04	ci right 9.818536e-04	k: 410	n:460000
KS ci ratio: 2.801785e-02	ci left: 4.024524e-02	ci right 4.139099e-02	k: 18775	n:460000
SYTL1   460000 perm   183 sec   (2519 perm/sec)   p_kst 4.081522e-02   p_cons 8.913043e-04   p_joint 9.413043e-04

Joint ci ratio: 1.911907e-01	ci left: 8.081944e-04	ci right 9.810325e-04	k: 419	n:470000
Cons ci ratio: 1.916480e-01	ci left: 8.041428e-04	ci right 9.765737e-04	k: 417	n:470000
KS ci ratio: 2.772962e-02	ci left: 4.021929e-02	ci right 4.135233e-02	k: 19168	n:470000
SYTL1   470000 perm   189 sec   (2490 perm/sec)   p_kst 4.078298e-02   p_cons 8.872340e-04   p_joint 8.914894e-04

Joint ci ratio: 1.885160e-01	ci left: 8.151691e-04	ci right 9.867807e-04	k: 431	n:480000
Cons ci ratio: 1.885160e-01	ci left: 8.151691e-04	ci right 9.867807e-04	k: 431	n:480000
KS ci ratio: 2.740486e-02	ci left: 4.032280e-02	ci right 4.144525e-02	k: 19623	n:480000
SYTL1   480000 perm   195 sec   (2463 perm/sec)   p_kst 4.088125e-02   p_cons 8.979167e-04   p_joint 8.979167e-04

Joint ci ratio: 2.031652e-01	ci left: 6.820746e-04	ci right 8.382119e-04	k: 371	n:490000
Cons ci ratio: 1.861604e-01	ci left: 8.199294e-04	ci right 9.901427e-04	k: 442	n:490000
KS ci ratio: 2.712578e-02	ci left: 4.032281e-02	ci right 4.143365e-02	k: 20029	n:490000
SYTL1   490000 perm   201 sec   (2437 perm/sec)   p_kst 4.087551e-02   p_cons 9.020408e-04   p_joint 7.571429e-04

Joint ci ratio: 2.358909e-01	ci left: 4.869248e-04	ci right 6.189745e-04	k: 275	n:500000
Cons ci ratio: 1.851194e-01	ci left: 8.130658e-04	ci right 9.808044e-04	k: 447	n:500000
KS ci ratio: 2.683863e-02	ci left: 4.037057e-02	ci right 4.147076e-02	k: 20459	n:500000
SYTL1   500000 perm   207 sec   (2410 perm/sec)   p_kst 4.091800e-02   p_cons 8.940000e-04   p_joint 5.500000e-04

Joint ci ratio: 2.342003e-01	ci left: 4.847584e-04	ci right 6.151420e-04	k: 279	n:510000
Cons ci ratio: 1.832875e-01	ci left: 8.139567e-04	ci right 9.800328e-04	k: 456	n:510000
KS ci ratio: 2.655444e-02	ci left: 4.043404e-02	ci right 4.152412e-02	k: 20898	n:510000
SYTL1   510000 perm   214 sec   (2385 perm/sec)   p_kst 4.097647e-02   p_cons 8.941176e-04   p_joint 5.470588e-04

Joint ci ratio: 2.305239e-01	ci left: 4.917366e-04	ci right 6.216255e-04	k: 288	n:520000
Cons ci ratio: 1.817042e-01	ci left: 8.129855e-04	ci right 9.772727e-04	k: 464	n:520000
KS ci ratio: 2.631447e-02	ci left: 4.039003e-02	ci right 4.146894e-02	k: 21282	n:520000
SYTL1   520000 perm   220 sec   (2360 perm/sec)   p_kst 4.092692e-02   p_cons 8.923077e-04   p_joint 5.538462e-04

Joint ci ratio: 2.584208e-01	ci left: 3.779317e-04	ci right 4.917964e-04	k: 229	n:530000
Cons ci ratio: 1.799709e-01	ci left: 8.138586e-04	ci right 9.765826e-04	k: 473	n:530000
KS ci ratio: 2.606835e-02	ci left: 4.038523e-02	ci right 4.145376e-02	k: 21686	n:530000
SYTL1   530000 perm   227 sec   (2336 perm/sec)   p_kst 4.091698e-02   p_cons 8.924528e-04   p_joint 4.320755e-04

Joint ci ratio: 2.567521e-01	ci left: 3.761298e-04	ci right 4.886025e-04	k: 232	n:540000
Cons ci ratio: 1.786568e-01	ci left: 8.111682e-04	ci right 9.720420e-04	k: 480	n:540000
KS ci ratio: 2.581988e-02	ci left: 4.040825e-02	ci right 4.146705e-02	k: 22105	n:540000
SYTL1   540000 perm   233 sec   (2313 perm/sec)   p_kst 4.093519e-02   p_cons 8.888889e-04   p_joint 4.296296e-04

Joint ci ratio: 2.059626e-01	ci left: 5.904129e-04	ci right 7.276628e-04	k: 361	n:550000
Cons ci ratio: 1.770085e-01	ci left: 8.120550e-04	ci right 9.714598e-04	k: 489	n:550000
KS ci ratio: 2.557482e-02	ci left: 4.044132e-02	ci right 4.149079e-02	k: 22530	n:550000
SYTL1   550000 perm   240 sec   (2290 perm/sec)   p_kst 4.096364e-02   p_cons 8.890909e-04   p_joint 6.563636e-04

Joint ci ratio: 1.809328e-01	ci left: 7.617319e-04	ci right 9.149367e-04	k: 468	n:560000
Cons ci ratio: 1.762912e-01	ci left: 8.043807e-04	ci right 9.615710e-04	k: 493	n:560000
KS ci ratio: 2.533776e-02	ci left: 4.046971e-02	ci right 4.151004e-02	k: 22953	n:560000
SYTL1   560000 perm   247 sec   (2267 perm/sec)   p_kst 4.098750e-02   p_cons 8.803571e-04   p_joint 8.357143e-04

Joint ci ratio: 1.714950e-01	ci left: 8.372552e-04	ci right 9.959582e-04	k: 521	n:570000
Cons ci ratio: 1.745333e-01	ci left: 8.070425e-04	ci right 9.630146e-04	k: 503	n:570000
KS ci ratio: 2.512848e-02	ci left: 4.043089e-02	ci right 4.146151e-02	k: 23338	n:570000
SYTL1   570000 perm   254 sec   (2244 perm/sec)   p_kst 4.094386e-02   p_cons 8.824561e-04   p_joint 9.140351e-04

Joint ci ratio: 1.781073e-01	ci left: 7.601652e-04	ci right 9.104102e-04	k: 483	n:580000
Cons ci ratio: 1.735040e-01	ci left: 8.030221e-04	ci right 9.572061e-04	k: 509	n:580000
KS ci ratio: 2.490734e-02	ci left: 4.044656e-02	ci right 4.146838e-02	k: 23754	n:580000
SYTL1   580000 perm   261 sec   (2222 perm/sec)   p_kst 4.095517e-02   p_cons 8.775862e-04   p_joint 8.327586e-04

Joint ci ratio: 1.690833e-01	ci left: 8.332137e-04	ci right 9.887033e-04	k: 536	n:590000
Cons ci ratio: 1.714977e-01	ci left: 8.088726e-04	ci right 9.621982e-04	k: 521	n:590000
KS ci ratio: 2.470205e-02	ci left: 4.042973e-02	ci right 4.144258e-02	k: 24151	n:590000
SYTL1   590000 perm   268 sec   (2201 perm/sec)   p_kst 4.093390e-02   p_cons 8.830508e-04   p_joint 9.084746e-04

Joint ci ratio: 1.661678e-01	ci left: 8.496657e-04	ci right 1.005218e-03	k: 555	n:600000
Cons ci ratio: 1.701986e-01	ci left: 8.081546e-04	ci right 9.600645e-04	k: 529	n:600000
KS ci ratio: 2.450177e-02	ci left: 4.041349e-02	ci right 4.141761e-02	k: 24548	n:600000
SYTL1   600000 perm   275 sec   (2180 perm/sec)   p_kst 4.091333e-02   p_cons 8.816667e-04   p_joint 9.250000e-04

Joint ci ratio: 1.813264e-01	ci left: 6.961626e-04	ci right 8.365175e-04	k: 466	n:610000
Cons ci ratio: 1.687716e-01	ci left: 8.090345e-04	ci right 9.597051e-04	k: 538	n:610000
KS ci ratio: 2.431288e-02	ci left: 4.037663e-02	ci right 4.137200e-02	k: 24932	n:610000
SYTL1   610000 perm   283 sec   (2157 perm/sec)   p_kst 4.087213e-02   p_cons 8.819672e-04   p_joint 7.639344e-04

Joint ci ratio: 1.966760e-01	ci left: 5.773605e-04	ci right 7.047999e-04	k: 396	n:620000
Cons ci ratio: 1.673799e-01	ci left: 8.098911e-04	ci right 9.593521e-04	k: 547	n:620000
KS ci ratio: 2.411241e-02	ci left: 4.039230e-02	ci right 4.137973e-02	k: 25348	n:620000
SYTL1   620000 perm   290 sec   (2135 perm/sec)   p_kst 4.088387e-02   p_cons 8.822581e-04   p_joint 6.387097e-04

Joint ci ratio: 1.949646e-01	ci left: 5.787625e-04	ci right 7.052677e-04	k: 403	n:630000
Cons ci ratio: 1.667730e-01	ci left: 8.031191e-04	ci right 9.507391e-04	k: 551	n:630000
KS ci ratio: 2.392601e-02	ci left: 4.037753e-02	ci right 4.135686e-02	k: 25745	n:630000
SYTL1   630000 perm   298 sec   (2115 perm/sec)   p_kst 4.086508e-02   p_cons 8.746032e-04   p_joint 6.396825e-04

Joint ci ratio: 1.940069e-01	ci left: 5.756649e-04	ci right 7.008020e-04	k: 407	n:640000
Cons ci ratio: 1.651355e-01	ci left: 8.070442e-04	ci right 9.537843e-04	k: 562	n:640000
KS ci ratio: 2.373300e-02	ci left: 4.039897e-02	ci right 4.137081e-02	k: 26165	n:640000
SYTL1   640000 perm   305 sec   (2095 perm/sec)   p_kst 4.088281e-02   p_cons 8.781250e-04   p_joint 6.359375e-04

Joint ci ratio: 1.925960e-01	ci left: 5.755926e-04	ci right 6.996973e-04	k: 413	n:650000
Cons ci ratio: 1.644075e-01	ci left: 8.020031e-04	ci right 9.471202e-04	k: 567	n:650000
KS ci ratio: 2.355520e-02	ci left: 4.038461e-02	ci right 4.134872e-02	k: 26562	n:650000
SYTL1   650000 perm   313 sec   (2076 perm/sec)   p_kst 4.086462e-02   p_cons 8.723077e-04   p_joint 6.353846e-04

Joint ci ratio: 2.317441e-01	ci left: 3.831440e-04	ci right 4.849610e-04	k: 285	n:660000
Cons ci ratio: 1.629790e-01	ci left: 8.043824e-04	ci right 9.485414e-04	k: 577	n:660000
KS ci ratio: 2.337005e-02	ci left: 4.040837e-02	ci right 4.136537e-02	k: 26984	n:660000
SYTL1   660000 perm   321 sec   (2057 perm/sec)   p_kst 4.088485e-02   p_cons 8.742424e-04   p_joint 4.318182e-04

Joint ci ratio: 2.305383e-01	ci left: 3.816438e-04	ci right 4.824592e-04	k: 288	n:670000
Cons ci ratio: 1.622790e-01	ci left: 7.995355e-04	ci right 9.421505e-04	k: 582	n:670000
KS ci ratio: 2.319890e-02	ci left: 4.039879e-02	ci right 4.134847e-02	k: 27384	n:670000
SYTL1   670000 perm   329 sec   (2038 perm/sec)   p_kst 4.087164e-02   p_cons 8.686567e-04   p_joint 4.298507e-04

Joint ci ratio: 2.289593e-01	ci left: 3.815752e-04	ci right 4.815846e-04	k: 292	n:680000
Cons ci ratio: 1.609048e-01	ci left: 8.018889e-04	ci right 9.435953e-04	k: 592	n:680000
KS ci ratio: 2.303189e-02	ci left: 4.038806e-02	ci right 4.133056e-02	k: 27783	n:680000
SYTL1   680000 perm   337 sec   (2020 perm/sec)   p_kst 4.085735e-02   p_cons 8.705882e-04   p_joint 4.294118e-04

Joint ci ratio: 2.289601e-01	ci left: 3.760450e-04	ci right 4.746053e-04	k: 292	n:690000
Cons ci ratio: 1.598304e-01	ci left: 8.013962e-04	ci right 9.419791e-04	k: 600	n:690000
KS ci ratio: 2.287225e-02	ci left: 4.036470e-02	ci right 4.130003e-02	k: 28173	n:690000
SYTL1   690000 perm   345 sec   (2001 perm/sec)   p_kst 4.083043e-02   p_cons 8.695652e-04   p_joint 4.231884e-04

Joint ci ratio: 2.274130e-01	ci left: 3.760606e-04	ci right 4.738656e-04	k: 296	n:700000
Cons ci ratio: 1.587772e-01	ci left: 8.009207e-04	ci right 9.404061e-04	k: 608	n:700000
KS ci ratio: 2.270925e-02	ci left: 4.036475e-02	ci right 4.129334e-02	k: 28579	n:700000
SYTL1   700000 perm   353 sec   (1984 perm/sec)   p_kst 4.082714e-02   p_cons 8.685714e-04   p_joint 4.228571e-04

Joint ci ratio: 2.266516e-01	ci left: 3.734206e-04	ci right 4.701683e-04	k: 298	n:710000
Cons ci ratio: 1.581298e-01	ci left: 7.964030e-04	ci right 9.344824e-04	k: 613	n:710000
KS ci ratio: 2.255983e-02	ci left: 4.032981e-02	ci right 4.125141e-02	k: 28960	n:710000
SYTL1   710000 perm   361 sec   (1967 perm/sec)   p_kst 4.078873e-02   p_cons 8.633803e-04   p_joint 4.197183e-04

Joint ci ratio: 2.266522e-01	ci left: 3.682341e-04	ci right 4.636384e-04	k: 298	n:720000
Cons ci ratio: 1.573631e-01	ci left: 7.933461e-04	ci right 9.301656e-04	k: 619	n:720000
KS ci ratio: 2.239423e-02	ci left: 4.036216e-02	ci right 4.127765e-02	k: 29389	n:720000
SYTL1   720000 perm   369 sec   (1950 perm/sec)   p_kst 4.081806e-02   p_cons 8.597222e-04   p_joint 4.138889e-04

Joint ci ratio: 2.247804e-01	ci left: 3.696519e-04	ci right 4.645230e-04	k: 303	n:730000
Cons ci ratio: 1.564824e-01	ci left: 7.916908e-04	ci right 9.273890e-04	k: 626	n:730000
KS ci ratio: 2.224506e-02	ci left: 4.034869e-02	ci right 4.125769e-02	k: 29785	n:730000
SYTL1   730000 perm   378 sec   (1933 perm/sec)   p_kst 4.080137e-02   p_cons 8.575342e-04   p_joint 4.150685e-04

Joint ci ratio: 2.229543e-01	ci left: 3.710345e-04	ci right 4.653807e-04	k: 308	n:740000
Cons ci ratio: 1.556163e-01	ci left: 7.900823e-04	ci right 9.246853e-04	k: 633	n:740000
KS ci ratio: 2.209922e-02	ci left: 4.033426e-02	ci right 4.123691e-02	k: 30180	n:740000
SYTL1   740000 perm   386 sec   (1917 perm/sec)   p_kst 4.078378e-02   p_cons 8.554054e-04   p_joint 4.162162e-04

Joint ci ratio: 1.949746e-01	ci left: 4.861582e-04	ci right 5.924280e-04	k: 403	n:750000
Cons ci ratio: 1.544032e-01	ci left: 7.923641e-04	ci right 9.262062e-04	k: 643	n:750000
KS ci ratio: 2.195583e-02	ci left: 4.032156e-02	ci right 4.121799e-02	k: 30576	n:750000
SYTL1   750000 perm   395 sec   (1901 perm/sec)   p_kst 4.076800e-02   p_cons 8.573333e-04   p_joint 5.373333e-04

Joint ci ratio: 1.935426e-01	ci left: 4.872722e-04	ci right 5.929111e-04	k: 409	n:760000
Cons ci ratio: 1.535710e-01	ci left: 7.907938e-04	ci right 9.235845e-04	k: 650	n:760000
KS ci ratio: 2.181520e-02	ci left: 4.030921e-02	ci right 4.119956e-02	k: 30972	n:760000
SYTL1   760000 perm   403 sec   (1885 perm/sec)   p_kst 4.075263e-02   p_cons 8.552632e-04   p_joint 5.381579e-04

Joint ci ratio: 1.923732e-01	ci left: 4.871238e-04	ci right 5.920177e-04	k: 414	n:770000
Cons ci ratio: 1.528684e-01	ci left: 7.880171e-04	ci right 9.196807e-04	k: 656	n:770000
KS ci ratio: 2.167759e-02	ci left: 4.029591e-02	ci right 4.118028e-02	k: 31367	n:770000
SYTL1   770000 perm   412 sec   (1868 perm/sec)   p_kst 4.073636e-02   p_cons 8.519481e-04   p_joint 5.376623e-04

Joint ci ratio: 1.907709e-01	ci left: 4.894226e-04	ci right 5.938320e-04	k: 421	n:780000
Cons ci ratio: 1.524056e-01	ci left: 7.828465e-04	ci right 9.132141e-04	k: 660	n:780000
KS ci ratio: 2.154964e-02	ci left: 4.025746e-02	ci right 4.113570e-02	k: 31742	n:780000
SYTL1   780000 perm   421 sec   (1851 perm/sec)   p_kst 4.069487e-02   p_cons 8.461538e-04   p_joint 5.397436e-04

Joint ci ratio: 1.781271e-01	ci left: 5.580907e-04	ci right 6.684093e-04	k: 483	n:790000
Cons ci ratio: 1.520615e-01	ci left: 7.765897e-04	ci right 9.055967e-04	k: 663	n:790000
KS ci ratio: 2.140933e-02	ci left: 4.027289e-02	ci right 4.114568e-02	k: 32159	n:790000
SYTL1   790000 perm   430 sec   (1835 perm/sec)   p_kst 4.070759e-02   p_cons 8.392405e-04   p_joint 6.113924e-04

Joint ci ratio: 1.772142e-01	ci left: 5.570866e-04	ci right 6.665819e-04	k: 488	n:800000
Cons ci ratio: 1.508171e-01	ci left: 7.801114e-04	ci right 9.085472e-04	k: 674	n:800000
KS ci ratio: 2.126832e-02	ci left: 4.030038e-02	ci right 4.116795e-02	k: 32586	n:800000
SYTL1   800000 perm   440 sec   (1820 perm/sec)   p_kst 4.073250e-02   p_cons 8.425000e-04   p_joint 6.100000e-04

Joint ci ratio: 1.761369e-01	ci left: 5.572888e-04	ci right 6.660871e-04	k: 494	n:810000
Cons ci ratio: 1.500413e-01	ci left: 7.787971e-04	ci right 9.062977e-04	k: 681	n:810000
KS ci ratio: 2.113507e-02	ci left: 4.030879e-02	ci right 4.117104e-02	k: 32998	n:810000
SYTL1   810000 perm   449 sec   (1804 perm/sec)   p_kst 4.073827e-02   p_cons 8.407407e-04   p_joint 6.098765e-04

Joint ci ratio: 2.278041e-01	ci left: 3.198762e-04	ci right 4.032320e-04	k: 295	n:820000
Cons ci ratio: 1.494946e-01	ci left: 7.751685e-04	ci right 9.015713e-04	k: 686	n:820000
KS ci ratio: 2.100167e-02	ci left: 4.032673e-02	ci right 4.118384e-02	k: 33418	n:820000
SYTL1   820000 perm   458 sec   (1790 perm/sec)   p_kst 4.075366e-02   p_cons 8.365854e-04   p_joint 3.597561e-04

Joint ci ratio: 2.262803e-01	ci left: 3.205675e-04	ci right 4.034667e-04	k: 299	n:830000
Cons ci ratio: 1.488462e-01	ci left: 7.727881e-04	ci right 8.982076e-04	k: 692	n:830000
KS ci ratio: 2.087463e-02	ci left: 4.032985e-02	ci right 4.118179e-02	k: 33826	n:830000
SYTL1   830000 perm   469 sec   (1771 perm/sec)   p_kst 4.075422e-02   p_cons 8.337349e-04   p_joint 3.602410e-04

Joint ci ratio: 2.251574e-01	ci left: 3.201207e-04	ci right 4.024365e-04	k: 302	n:840000
Cons ci ratio: 1.476785e-01	ci left: 7.761978e-04	ci right 9.010952e-04	k: 703	n:840000
KS ci ratio: 2.075871e-02	ci left: 4.029976e-02	ci right 4.114627e-02	k: 34206	n:840000
SYTL1   840000 perm   479 sec   (1753 perm/sec)   p_kst 4.072143e-02   p_cons 8.369048e-04   p_joint 3.595238e-04

Joint ci ratio: 2.215306e-01	ci left: 3.274613e-04	ci right 4.101235e-04	k: 312	n:850000
Cons ci ratio: 1.466406e-01	ci left: 7.783977e-04	ci right 9.026916e-04	k: 713	n:850000
KS ci ratio: 2.064222e-02	ci left: 4.027975e-02	ci right 4.112104e-02	k: 34594	n:850000
SYTL1   850000 perm   489 sec   (1738 perm/sec)   p_kst 4.069882e-02   p_cons 8.388235e-04   p_joint 3.670588e-04

Joint ci ratio: 2.208264e-01	ci left: 3.258504e-04	ci right 4.078089e-04	k: 314	n:860000
Cons ci ratio: 1.456242e-01	ci left: 7.805494e-04	ci right 9.042479e-04	k: 723	n:860000
KS ci ratio: 2.052308e-02	ci left: 4.027757e-02	ci right 4.111390e-02	k: 34997	n:860000
SYTL1   860000 perm   499 sec   (1725 perm/sec)   p_kst 4.069419e-02   p_cons 8.406977e-04   p_joint 3.651163e-04

Joint ci ratio: 2.080094e-01	ci left: 3.656161e-04	ci right 4.515605e-04	k: 354	n:870000
Cons ci ratio: 1.449254e-01	ci left: 7.793310e-04	ci right 9.021925e-04	k: 730	n:870000
KS ci ratio: 2.040688e-02	ci left: 4.027202e-02	ci right 4.110345e-02	k: 35397	n:870000
SYTL1   870000 perm   508 sec   (1711 perm/sec)   p_kst 4.068621e-02   p_cons 8.390805e-04   p_joint 4.068966e-04

Joint ci ratio: 2.077174e-01	ci left: 3.625385e-04	ci right 4.476246e-04	k: 355	n:880000
Cons ci ratio: 1.443345e-01	ci left: 7.770464e-04	ci right 8.990052e-04	k: 736	n:880000
KS ci ratio: 2.029618e-02	ci left: 4.025305e-02	ci right 4.107952e-02	k: 35785	n:880000
SYTL1   880000 perm   518 sec   (1698 perm/sec)   p_kst 4.066477e-02   p_cons 8.363636e-04   p_joint 4.034091e-04

Joint ci ratio: 2.074267e-01	ci left: 3.595302e-04	ci right 4.437771e-04	k: 356	n:890000
Cons ci ratio: 1.437507e-01	ci left: 7.748141e-04	ci right 8.958884e-04	k: 742	n:890000
KS ci ratio: 2.018231e-02	ci left: 4.025352e-02	ci right 4.107532e-02	k: 36190	n:890000
SYTL1   890000 perm   528 sec   (1685 perm/sec)   p_kst 4.066292e-02   p_cons 8.337079e-04   p_joint 4.000000e-04

Joint ci ratio: 2.068483e-01	ci left: 3.576423e-04	ci right 4.411837e-04	k: 358	n:900000
Cons ci ratio: 1.425091e-01	ci left: 7.801324e-04	ci right 9.008953e-04	k: 755	n:900000
KS ci ratio: 2.006149e-02	ci left: 4.028827e-02	ci right 4.110580e-02	k: 36626	n:900000
SYTL1   900000 perm   538 sec   (1672 perm/sec)   p_kst 4.069556e-02   p_cons 8.388889e-04   p_joint 3.977778e-04

Joint ci ratio: 2.051409e-01	ci left: 3.599655e-04	ci right 4.432685e-04	k: 364	n:910000
Cons ci ratio: 1.410240e-01	ci left: 7.885185e-04	ci right 9.092007e-04	k: 771	n:910000
KS ci ratio: 1.994646e-02	ci left: 4.030806e-02	ci right 4.112124e-02	k: 37049	n:910000
SYTL1   910000 perm   548 sec   (1660 perm/sec)   p_kst 4.071319e-02   p_cons 8.472527e-04   p_joint 4.000000e-04

Joint ci ratio: 2.040260e-01	ci left: 3.601780e-04	ci right 4.430206e-04	k: 368	n:920000
Cons ci ratio: 1.402989e-01	ci left: 7.883373e-04	ci right 9.083195e-04	k: 779	n:920000
KS ci ratio: 1.983779e-02	ci left: 4.031012e-02	ci right 4.111886e-02	k: 37456	n:920000
SYTL1   920000 perm   558 sec   (1648 perm/sec)   p_kst 4.071304e-02   p_cons 8.467391e-04   p_joint 4.000000e-04

Joint ci ratio: 2.034756e-01	ci left: 3.583459e-04	ci right 4.405171e-04	k: 370	n:930000
Cons ci ratio: 1.393198e-01	ci left: 7.912749e-04	ci right 9.107940e-04	k: 790	n:930000
KS ci ratio: 1.972655e-02	ci left: 4.032927e-02	ci right 4.113381e-02	k: 37879	n:930000
SYTL1   930000 perm   568 sec   (1636 perm/sec)   p_kst 4.073011e-02   p_cons 8.494624e-04   p_joint 3.978495e-04

Joint ci ratio: 2.141342e-01	ci left: 3.182363e-04	ci right 3.955354e-04	k: 334	n:940000
Cons ci ratio: 1.387946e-01	ci left: 7.890179e-04	ci right 9.077097e-04	k: 796	n:940000
KS ci ratio: 1.962142e-02	ci left: 4.033108e-02	ci right 4.113132e-02	k: 38286	n:940000
SYTL1   940000 perm   579 sec   (1624 perm/sec)   p_kst 4.072979e-02   p_cons 8.468085e-04   p_joint 3.553191e-04

Joint ci ratio: 2.125537e-01	ci left: 3.198684e-04	ci right 3.969158e-04	k: 339	n:950000
Cons ci ratio: 1.378464e-01	ci left: 7.918908e-04	ci right 9.101341e-04	k: 807	n:950000
KS ci ratio: 1.951086e-02	ci left: 4.036116e-02	ci right 4.115743e-02	k: 38720	n:950000
SYTL1   950000 perm   589 sec   (1613 perm/sec)   p_kst 4.075789e-02   p_cons 8.494737e-04   p_joint 3.568421e-04

Joint ci ratio: 2.113143e-01	ci left: 3.204820e-04	ci right 3.971688e-04	k: 343	n:960000
Cons ci ratio: 1.367504e-01	ci left: 7.967186e-04	ci right 9.146599e-04	k: 820	n:960000
KS ci ratio: 1.940551e-02	ci left: 4.037714e-02	ci right 4.116938e-02	k: 39141	n:960000
SYTL1   960000 perm   599 sec   (1602 perm/sec)   p_kst 4.077187e-02   p_cons 8.541667e-04   p_joint 3.572917e-04

Joint ci ratio: 2.103989e-01	ci left: 3.201075e-04	ci right 3.963301e-04	k: 346	n:970000
Cons ci ratio: 1.360890e-01	ci left: 7.964709e-04	ci right 9.137592e-04	k: 828	n:970000
KS ci ratio: 1.930617e-02	ci left: 4.037536e-02	ci right 4.116347e-02	k: 39545	n:970000
SYTL1   970000 perm   610 sec   (1590 perm/sec)   p_kst 4.076804e-02   p_cons 8.536082e-04   p_joint 3.567010e-04

Joint ci ratio: 2.091965e-01	ci left: 3.207083e-04	ci right 3.965817e-04	k: 350	n:980000
Cons ci ratio: 1.353562e-01	ci left: 7.972155e-04	ci right 9.139304e-04	k: 837	n:980000
KS ci ratio: 1.921486e-02	ci left: 4.034722e-02	ci right 4.113101e-02	k: 39923	n:980000
SYTL1   980000 perm   621 sec   (1579 perm/sec)   p_kst 4.073776e-02   p_cons 8.540816e-04   p_joint 3.571429e-04

Joint ci ratio: 2.086032e-01	ci left: 3.193833e-04	ci right 3.947016e-04	k: 352	n:990000
Cons ci ratio: 1.343971e-01	ci left: 8.008752e-04	ci right 9.172286e-04	k: 849	n:990000
KS ci ratio: 1.910631e-02	ci left: 4.039506e-02	ci right 4.117530e-02	k: 40376	n:990000
SYTL1   990000 perm   632 sec   (1567 perm/sec)   p_kst 4.078384e-02   p_cons 8.575758e-04   p_joint 3.555556e-04

Joint ci ratio: 2.083087e-01	ci left: 3.171373e-04	ci right 3.918067e-04	k: 353	n:1000000
Cons ci ratio: 1.342397e-01	ci left: 7.947990e-04	ci right 9.101237e-04	k: 851	n:1000000
KS ci ratio: 1.900686e-02	ci left: 4.041210e-02	ci right 4.118856e-02	k: 40799	n:1000000
SYTL1   1000000 perm   643 sec   (1556 perm/sec)   p_kst 4.079900e-02   p_cons 8.510000e-04   p_joint 3.530000e-04

Joint ci ratio: 2.077229e-01	ci left: 3.158743e-04	ci right 3.900107e-04	k: 355	n:1010000
Cons ci ratio: 1.340043e-01	ci left: 7.898002e-04	ci right 9.041827e-04	k: 854	n:1010000
KS ci ratio: 1.891971e-02	ci left: 4.038446e-02	ci right 4.115679e-02	k: 41177	n:1010000
SYTL1   1010000 perm   653 sec   (1546 perm/sec)   p_kst 4.076931e-02   p_cons 8.455446e-04   p_joint 3.514851e-04

Joint ci ratio: 2.068532e-01	ci left: 3.155660e-04	ci right 3.892807e-04	k: 358	n:1020000
Cons ci ratio: 1.332274e-01	ci left: 7.915333e-04	ci right 9.054495e-04	k: 864	n:1020000
KS ci ratio: 1.882408e-02	ci left: 4.039738e-02	ci right 4.116601e-02	k: 41596	n:1020000
SYTL1   1020000 perm   664 sec   (1536 perm/sec)   p_kst 4.078039e-02   p_cons 8.470588e-04   p_joint 3.509804e-04

Joint ci ratio: 2.416866e-01	ci left: 2.245010e-04	ci right 2.871036e-04	k: 262	n:1030000
Cons ci ratio: 1.329207e-01	ci left: 7.876027e-04	ci right 9.006716e-04	k: 868	n:1030000
KS ci ratio: 1.872662e-02	ci left: 4.042359e-02	ci right 4.118870e-02	k: 42029	n:1030000
SYTL1   1030000 perm   675 sec   (1526 perm/sec)   p_kst 4.080485e-02   p_cons 8.427184e-04   p_joint 2.543689e-04

Joint ci ratio: 2.407729e-01	ci left: 2.241492e-04	ci right 2.863821e-04	k: 264	n:1040000
Cons ci ratio: 1.325402e-01	ci left: 7.846775e-04	ci right 8.969786e-04	k: 873	n:1040000
KS ci ratio: 1.864601e-02	ci left: 4.038518e-02	ci right 4.114623e-02	k: 42395	n:1040000
SYTL1   1040000 perm   686 sec   (1515 perm/sec)   p_kst 4.076442e-02   p_cons 8.394231e-04   p_joint 2.538462e-04

Joint ci ratio: 2.407732e-01	ci left: 2.220144e-04	ci right 2.836547e-04	k: 264	n:1050000
Cons ci ratio: 1.320877e-01	ci left: 7.827295e-04	ci right 8.943394e-04	k: 879	n:1050000
KS ci ratio: 1.856439e-02	ci left: 4.035603e-02	ci right 4.111317e-02	k: 42770	n:1050000
SYTL1   1050000 perm   698 sec   (1505 perm/sec)   p_kst 4.073333e-02   p_cons 8.371429e-04   p_joint 2.514286e-04

Joint ci ratio: 2.407735e-01	ci left: 2.199199e-04	ci right 2.809788e-04	k: 264	n:1060000
Cons ci ratio: 1.317888e-01	ci left: 7.789942e-04	ci right 8.898004e-04	k: 883	n:1060000
KS ci ratio: 1.848115e-02	ci left: 4.033871e-02	ci right 4.109210e-02	k: 43157	n:1060000
SYTL1   1060000 perm   709 sec   (1495 perm/sec)   p_kst 4.071415e-02   p_cons 8.330189e-04   p_joint 2.490566e-04

Joint ci ratio: 2.403206e-01	ci left: 2.187428e-04	ci right 2.793436e-04	k: 265	n:1070000
Cons ci ratio: 1.311230e-01	ci left: 7.798485e-04	ci right 8.901721e-04	k: 892	n:1070000
KS ci ratio: 1.839374e-02	ci left: 4.034406e-02	ci right 4.109394e-02	k: 43568	n:1070000
SYTL1   1070000 perm   720 sec   (1485 perm/sec)   p_kst 4.071776e-02   p_cons 8.336449e-04   p_joint 2.476636e-04

Joint ci ratio: 2.398703e-01	ci left: 2.175876e-04	ci right 2.777386e-04	k: 266	n:1080000
Cons ci ratio: 1.301067e-01	ci left: 7.851672e-04	ci right 8.953159e-04	k: 906	n:1080000
KS ci ratio: 1.829997e-02	ci left: 4.038158e-02	ci right 4.112829e-02	k: 44014	n:1080000
SYTL1   1080000 perm   732 sec   (1475 perm/sec)   p_kst 4.075370e-02   p_cons 8.388889e-04   p_joint 2.462963e-04

Joint ci ratio: 2.389770e-01	ci left: 2.173162e-04	ci right 2.771353e-04	k: 268	n:1090000
Cons ci ratio: 1.297498e-01	ci left: 7.824018e-04	ci right 8.918383e-04	k: 911	n:1090000
KS ci ratio: 1.821787e-02	ci left: 4.037458e-02	ci right 4.111778e-02	k: 44412	n:1090000
SYTL1   1090000 perm   744 sec   (1465 perm/sec)   p_kst 4.074495e-02   p_cons 8.357798e-04   p_joint 2.458716e-04

Joint ci ratio: 2.367863e-01	ci left: 2.196152e-04	ci right 2.794317e-04	k: 273	n:1100000
Cons ci ratio: 1.291845e-01	ci left: 7.823263e-04	ci right 8.912388e-04	k: 919	n:1100000
KS ci ratio: 1.813160e-02	ci left: 4.039033e-02	ci right 4.113027e-02	k: 44835	n:1100000
SYTL1   1100000 perm   756 sec   (1456 perm/sec)   p_kst 4.075909e-02   p_cons 8.354545e-04   p_joint 2.481818e-04

Joint ci ratio: 2.355005e-01	ci left: 2.201795e-04	ci right 2.797766e-04	k: 276	n:1110000
Cons ci ratio: 1.282810e-01	ci left: 7.866130e-04	ci right 8.952982e-04	k: 932	n:1110000
KS ci ratio: 1.805215e-02	ci left: 4.038160e-02	ci right 4.111810e-02	k: 45231	n:1110000
SYTL1   1110000 perm   768 sec   (1446 perm/sec)   p_kst 4.074865e-02   p_cons 8.396396e-04   p_joint 2.486486e-04

Joint ci ratio: 2.338182e-01	ci left: 2.215751e-04	ci right 2.810596e-04	k: 280	n:1120000
Cons ci ratio: 1.271276e-01	ci left: 7.942835e-04	ci right 9.029674e-04	k: 949	n:1120000
KS ci ratio: 1.797970e-02	ci left: 4.034724e-02	ci right 4.108013e-02	k: 45598	n:1120000
SYTL1   1120000 perm   780 sec   (1437 perm/sec)   p_kst 4.071250e-02   p_cons 8.473214e-04   p_joint 2.500000e-04

Joint ci ratio: 2.325799e-01	ci left: 2.221140e-04	ci right 2.813820e-04	k: 283	n:1130000
Cons ci ratio: 1.263978e-01	ci left: 7.966803e-04	ci right 9.050195e-04	k: 960	n:1130000
KS ci ratio: 1.789634e-02	ci left: 4.036461e-02	ci right 4.109438e-02	k: 46023	n:1130000
SYTL1   1130000 perm   792 sec   (1427 perm/sec)   p_kst 4.072832e-02   p_cons 8.495575e-04   p_joint 2.504425e-04

Joint ci ratio: 2.321716e-01	ci left: 2.209918e-04	ci right 2.798420e-04	k: 284	n:1140000
Cons ci ratio: 1.258750e-01	ci left: 7.964880e-04	ci right 9.043196e-04	k: 968	n:1140000
KS ci ratio: 1.781274e-02	ci left: 4.038780e-02	ci right 4.111454e-02	k: 46455	n:1140000
SYTL1   1140000 perm   804 sec   (1418 perm/sec)   p_kst 4.075000e-02   p_cons 8.491228e-04   p_joint 2.491228e-04

Joint ci ratio: 2.305592e-01	ci left: 2.223468e-04	ci right 2.810880e-04	k: 288	n:1150000
Cons ci ratio: 1.254872e-01	ci left: 7.946154e-04	ci right 9.018374e-04	k: 974	n:1150000
KS ci ratio: 1.773167e-02	ci left: 4.040452e-02	ci right 4.112823e-02	k: 46880	n:1150000
SYTL1   1150000 perm   816 sec   (1410 perm/sec)   p_kst 4.076522e-02   p_cons 8.469565e-04   p_joint 2.504348e-04

Joint ci ratio: 1.954779e-01	ci left: 3.126837e-04	ci right 3.812308e-04	k: 401	n:1160000
Cons ci ratio: 1.248485e-01	ci left: 7.961160e-04	ci right 9.029533e-04	k: 984	n:1160000
KS ci ratio: 1.765793e-02	ci left: 4.039350e-02	ci right 4.111397e-02	k: 47273	n:1160000
SYTL1   1160000 perm   828 sec   (1401 perm/sec)   p_kst 4.075259e-02   p_cons 8.482759e-04   p_joint 3.456897e-04

Joint ci ratio: 1.952354e-01	ci left: 3.108241e-04	ci right 3.788689e-04	k: 402	n:1170000
Cons ci ratio: 1.244073e-01	ci left: 7.951080e-04	ci right 9.014051e-04	k: 991	n:1170000
KS ci ratio: 1.757166e-02	ci left: 4.044225e-02	ci right 4.116003e-02	k: 47736	n:1170000
SYTL1   1170000 perm   840 sec   (1392 perm/sec)   p_kst 4.080000e-02   p_cons 8.470085e-04   p_joint 3.435897e-04

Joint ci ratio: 1.942736e-01	ci left: 3.114146e-04	ci right 3.792130e-04	k: 406	n:1180000
Cons ci ratio: 1.239087e-01	ci left: 7.949389e-04	ci right 9.007562e-04	k: 999	n:1180000
KS ci ratio: 1.749837e-02	ci left: 4.043786e-02	ci right 4.115253e-02	k: 48137	n:1180000
SYTL1   1180000 perm   853 sec   (1384 perm/sec)   p_kst 4.079407e-02   p_cons 8.466102e-04   p_joint 3.440678e-04

Joint ci ratio: 1.933259e-01	ci left: 3.119959e-04	ci right 3.795506e-04	k: 410	n:1190000
Cons ci ratio: 1.232326e-01	ci left: 7.972167e-04	ci right 9.027161e-04	k: 1010	n:1190000
KS ci ratio: 1.742524e-02	ci left: 4.043690e-02	ci right 4.114854e-02	k: 48542	n:1190000
SYTL1   1190000 perm   865 sec   (1375 perm/sec)   p_kst 4.079160e-02   p_cons 8.487395e-04   p_joint 3.445378e-04

Joint ci ratio: 1.928573e-01	ci left: 3.109820e-04	ci right 3.781348e-04	k: 412	n:1200000
Cons ci ratio: 1.231113e-01	ci left: 7.921885e-04	ci right 8.969116e-04	k: 1012	n:1200000
KS ci ratio: 1.735100e-02	ci left: 4.044508e-02	ci right 4.115380e-02	k: 48958	n:1200000
SYTL1   1200000 perm   878 sec   (1367 perm/sec)   p_kst 4.079833e-02   p_cons 8.433333e-04   p_joint 3.433333e-04

Joint ci ratio: 1.914713e-01	ci left: 3.131321e-04	ci right 3.802067e-04	k: 418	n:1210000
Cons ci ratio: 1.223883e-01	ci left: 7.952544e-04	ci right 8.997207e-04	k: 1024	n:1210000
KS ci ratio: 1.728298e-02	ci left: 4.042927e-02	ci right 4.113491e-02	k: 49345	n:1210000
SYTL1   1210000 perm   890 sec   (1359 perm/sec)   p_kst 4.078099e-02   p_cons 8.462810e-04   p_joint 3.454545e-04

Joint ci ratio: 1.912434e-01	ci left: 3.113458e-04	ci right 3.779491e-04	k: 419	n:1220000
Cons ci ratio: 1.218545e-01	ci left: 7.958876e-04	ci right 8.999482e-04	k: 1033	n:1220000
KS ci ratio: 1.721558e-02	ci left: 4.041454e-02	ci right 4.111715e-02	k: 49733	n:1220000
SYTL1   1220000 perm   903 sec   (1351 perm/sec)   p_kst 4.076475e-02   p_cons 8.467213e-04   p_joint 3.434426e-04

Joint ci ratio: 1.898917e-01	ci left: 3.134599e-04	ci right 3.799868e-04	k: 425	n:1230000
Cons ci ratio: 1.212113e-01	ci left: 7.980882e-04	ci right 9.018464e-04	k: 1044	n:1230000
KS ci ratio: 1.714521e-02	ci left: 4.041706e-02	ci right 4.111681e-02	k: 50142	n:1230000
SYTL1   1230000 perm   916 sec   (1343 perm/sec)   p_kst 4.076585e-02   p_cons 8.487805e-04   p_joint 3.455285e-04

Joint ci ratio: 1.892266e-01	ci left: 3.132365e-04	ci right 3.794565e-04	k: 428	n:1240000
Cons ci ratio: 1.206354e-01	ci left: 7.994727e-04	ci right 9.028817e-04	k: 1054	n:1240000
KS ci ratio: 1.708099e-02	ci left: 4.039545e-02	ci right 4.109218e-02	k: 50521	n:1240000
SYTL1   1240000 perm   929 sec   (1335 perm/sec)   p_kst 4.074274e-02   p_cons 8.500000e-04   p_joint 3.451613e-04

Joint ci ratio: 1.885684e-01	ci left: 3.130171e-04	ci right 3.789342e-04	k: 431	n:1250000
Cons ci ratio: 1.202373e-01	ci left: 7.985081e-04	ci right 9.014273e-04	k: 1061	n:1250000
KS ci ratio: 1.701591e-02	ci left: 4.038136e-02	ci right 4.107517e-02	k: 50909	n:1250000
SYTL1   1250000 perm   942 sec   (1327 perm/sec)   p_kst 4.072720e-02   p_cons 8.488000e-04   p_joint 3.448000e-04

Joint ci ratio: 1.874864e-01	ci left: 3.143144e-04	ci right 3.800816e-04	k: 436	n:1260000
Cons ci ratio: 1.196751e-01	ci left: 7.998692e-04	ci right 9.024476e-04	k: 1071	n:1260000
KS ci ratio: 1.695192e-02	ci left: 4.036592e-02	ci right 4.105683e-02	k: 51295	n:1260000
SYTL1   1260000 perm   955 sec   (1319 perm/sec)   p_kst 4.071032e-02   p_cons 8.500000e-04   p_joint 3.460317e-04

Joint ci ratio: 1.870590e-01	ci left: 3.133404e-04	ci right 3.787374e-04	k: 438	n:1270000
Cons ci ratio: 1.191758e-01	ci left: 8.004459e-04	ci right 9.026399e-04	k: 1080	n:1270000
KS ci ratio: 1.688490e-02	ci left: 4.036798e-02	ci right 4.105616e-02	k: 51703	n:1270000
SYTL1   1270000 perm   968 sec   (1311 perm/sec)   p_kst 4.071102e-02   p_cons 8.503937e-04   p_joint 3.448819e-04

Joint ci ratio: 1.860026e-01	ci left: 3.146163e-04	ci right 3.798669e-04	k: 443	n:1280000
Cons ci ratio: 1.185196e-01	ci left: 8.032888e-04	ci right 9.052415e-04	k: 1092	n:1280000
KS ci ratio: 1.681748e-02	ci left: 4.037546e-02	ci right 4.106100e-02	k: 52118	n:1280000
SYTL1   1280000 perm   982 sec   (1304 perm/sec)   p_kst 4.071719e-02   p_cons 8.531250e-04   p_joint 3.460937e-04

Joint ci ratio: 1.857937e-01	ci left: 3.129165e-04	ci right 3.777335e-04	k: 444	n:1290000
Cons ci ratio: 1.181958e-01	ci left: 8.015752e-04	ci right 9.030130e-04	k: 1098	n:1290000
KS ci ratio: 1.674738e-02	ci left: 4.039904e-02	ci right 4.108209e-02	k: 52554	n:1290000
SYTL1   1290000 perm   995 sec   (1296 perm/sec)   p_kst 4.073953e-02   p_cons 8.511628e-04   p_joint 3.441860e-04

Joint ci ratio: 1.853777e-01	ci left: 3.119764e-04	ci right 3.764377e-04	k: 446	n:1300000
Cons ci ratio: 1.177147e-01	ci left: 8.021281e-04	ci right 9.031940e-04	k: 1107	n:1300000
KS ci ratio: 1.667947e-02	ci left: 4.041614e-02	ci right 4.109668e-02	k: 52982	n:1300000
SYTL1   1300000 perm   1009 sec   (1289 perm/sec)   p_kst 4.075538e-02   p_cons 8.515385e-04   p_joint 3.430769e-04

Joint ci ratio: 1.849645e-01	ci left: 3.110509e-04	ci right 3.751615e-04	k: 448	n:1310000
Cons ci ratio: 1.173974e-01	ci left: 8.004504e-04	ci right 9.010142e-04	k: 1113	n:1310000
KS ci ratio: 1.660929e-02	ci left: 4.044742e-02	ci right 4.112560e-02	k: 53429	n:1310000
SYTL1   1310000 perm   1022 sec   (1281 perm/sec)   p_kst 4.078550e-02   p_cons 8.496183e-04   p_joint 3.419847e-04

Joint ci ratio: 1.831377e-01	ci left: 3.151986e-04	ci right 3.794513e-04	k: 457	n:1320000
Cons ci ratio: 1.169260e-01	ci left: 8.010047e-04	ci right 9.012062e-04	k: 1122	n:1320000
KS ci ratio: 1.654655e-02	ci left: 4.044730e-02	ci right 4.112289e-02	k: 53835	n:1320000
SYTL1   1320000 perm   1036 sec   (1274 perm/sec)   p_kst 4.078409e-02   p_cons 8.500000e-04   p_joint 3.462121e-04

Joint ci ratio: 1.817538e-01	ci left: 3.178515e-04	ci right 3.821015e-04	k: 464	n:1330000
Cons ci ratio: 1.165634e-01	ci left: 8.000916e-04	ci right 8.998470e-04	k: 1129	n:1330000
KS ci ratio: 1.648215e-02	ci left: 4.045843e-02	ci right 4.113155e-02	k: 54256	n:1330000
SYTL1   1330000 perm   1050 sec   (1267 perm/sec)   p_kst 4.079398e-02   p_cons 8.488722e-04   p_joint 3.488722e-04

Joint ci ratio: 1.813643e-01	ci left: 3.169041e-04	ci right 3.808103e-04	k: 466	n:1340000
Cons ci ratio: 1.162041e-01	ci left: 7.991925e-04	ci right 8.985077e-04	k: 1136	n:1340000
KS ci ratio: 1.642287e-02	ci left: 4.044857e-02	ci right 4.111909e-02	k: 54649	n:1340000
SYTL1   1340000 perm   1064 sec   (1260 perm/sec)   p_kst 4.078284e-02   p_cons 8.477612e-04   p_joint 3.477612e-04

Joint ci ratio: 1.804010e-01	ci left: 3.180927e-04	ci right 3.818607e-04	k: 471	n:1350000
Cons ci ratio: 1.156459e-01	ci left: 8.011845e-04	ci right 9.002363e-04	k: 1147	n:1350000
KS ci ratio: 1.635943e-02	ci left: 4.046174e-02	ci right 4.112986e-02	k: 55073	n:1350000
SYTL1   1350000 perm   1078 sec   (1253 perm/sec)   p_kst 4.079481e-02   p_cons 8.496296e-04   p_joint 3.488889e-04

Joint ci ratio: 1.792650e-01	ci left: 3.199670e-04	ci right 3.836630e-04	k: 477	n:1360000
Cons ci ratio: 1.150957e-01	ci left: 8.031483e-04	ci right 9.019384e-04	k: 1158	n:1360000
KS ci ratio: 1.629978e-02	ci left: 4.046008e-02	ci right 4.112571e-02	k: 55477	n:1360000
SYTL1   1360000 perm   1092 sec   (1246 perm/sec)   p_kst 4.079191e-02   p_cons 8.514706e-04   p_joint 3.507353e-04

Joint ci ratio: 1.783347e-01	ci left: 3.211178e-04	ci right 3.846753e-04	k: 482	n:1370000
Cons ci ratio: 1.146514e-01	ci left: 8.036666e-04	ci right 9.021129e-04	k: 1167	n:1370000
KS ci ratio: 1.623760e-02	ci left: 4.047371e-02	ci right 4.113700e-02	k: 55902	n:1370000
SYTL1   1370000 perm   1106 sec   (1239 perm/sec)   p_kst 4.080438e-02   p_cons 8.518248e-04   p_joint 3.518248e-04

Joint ci ratio: 1.777834e-01	ci left: 3.208679e-04	ci right 3.841585e-04	k: 485	n:1380000
Cons ci ratio: 1.143094e-01	ci left: 8.027701e-04	ci right 9.007936e-04	k: 1174	n:1380000
KS ci ratio: 1.617582e-02	ci left: 4.048859e-02	ci right 4.114957e-02	k: 56329	n:1380000
SYTL1   1380000 perm   1120 sec   (1232 perm/sec)   p_kst 4.081812e-02   p_cons 8.507246e-04   p_joint 3.514493e-04

Joint ci ratio: 1.774188e-01	ci left: 3.199344e-04	ci right 3.828975e-04	k: 487	n:1390000
Cons ci ratio: 1.137780e-01	ci left: 8.046827e-04	ci right 9.024523e-04	k: 1185	n:1390000
KS ci ratio: 1.611993e-02	ci left: 4.047818e-02	ci right 4.113669e-02	k: 56721	n:1390000
SYTL1   1390000 perm   1134 sec   (1225 perm/sec)   p_kst 4.080647e-02   p_cons 8.525180e-04   p_joint 3.503597e-04

Joint ci ratio: 1.763380e-01	ci left: 3.217451e-04	ci right 3.846378e-04	k: 493	n:1400000
Cons ci ratio: 1.132539e-01	ci left: 8.065691e-04	ci right 9.040863e-04	k: 1196	n:1400000
KS ci ratio: 1.606402e-02	ci left: 4.047076e-02	ci right 4.112685e-02	k: 57117	n:1400000
SYTL1   1400000 perm   1149 sec   (1219 perm/sec)   p_kst 4.079786e-02   p_cons 8.542857e-04   p_joint 3.521429e-04

Joint ci ratio: 1.759822e-01	ci left: 3.208191e-04	ci right 3.833908e-04	k: 495	n:1410000
Cons ci ratio: 1.127837e-01	ci left: 8.077405e-04	ci right 9.049669e-04	k: 1206	n:1410000
KS ci ratio: 1.600884e-02	ci left: 4.046275e-02	ci right 4.111644e-02	k: 57512	n:1410000
SYTL1   1410000 perm   1163 sec   (1212 perm/sec)   p_kst 4.078865e-02   p_cons 8.553191e-04   p_joint 3.510638e-04

Joint ci ratio: 1.756285e-01	ci left: 3.199063e-04	ci right 3.821612e-04	k: 497	n:1420000
Cons ci ratio: 1.125045e-01	ci left: 8.061584e-04	ci right 9.029383e-04	k: 1212	n:1420000
KS ci ratio: 1.595078e-02	ci left: 4.047170e-02	ci right 4.112313e-02	k: 57931	n:1420000
SYTL1   1420000 perm   1178 sec   (1205 perm/sec)   p_kst 4.079648e-02   p_cons 8.535211e-04   p_joint 3.500000e-04

Joint ci ratio: 1.749274e-01	ci left: 3.203437e-04	ci right 3.824086e-04	k: 501	n:1430000
Cons ci ratio: 1.121354e-01	ci left: 8.059582e-04	ci right 9.023756e-04	k: 1220	n:1430000
KS ci ratio: 1.589221e-02	ci left: 4.048609e-02	ci right 4.113535e-02	k: 58358	n:1430000
SYTL1   1430000 perm   1193 sec   (1199 perm/sec)   p_kst 4.080979e-02   p_cons 8.531469e-04   p_joint 3.503497e-04

Joint ci ratio: 1.742346e-01	ci left: 3.207755e-04	ci right 3.826520e-04	k: 505	n:1440000
Cons ci ratio: 1.117243e-01	ci left: 8.064363e-04	ci right 9.025339e-04	k: 1229	n:1440000
KS ci ratio: 1.583666e-02	ci left: 4.048853e-02	ci right 4.113554e-02	k: 58768	n:1440000
SYTL1   1440000 perm   1208 sec   (1193 perm/sec)   p_kst 4.081111e-02   p_cons 8.534722e-04   p_joint 3.506944e-04

Joint ci ratio: 1.737204e-01	ci left: 3.205421e-04	ci right 3.821720e-04	k: 508	n:1450000
Cons ci ratio: 1.113178e-01	ci left: 8.069085e-04	ci right 9.026895e-04	k: 1238	n:1450000
KS ci ratio: 1.578364e-02	ci left: 4.048133e-02	ci right 4.112603e-02	k: 59164	n:1450000
SYTL1   1450000 perm   1222 sec   (1186 perm/sec)   p_kst 4.080276e-02   p_cons 8.537931e-04   p_joint 3.503448e-04

Joint ci ratio: 1.735501e-01	ci left: 3.190018e-04	ci right 3.802691e-04	k: 509	n:1460000
Cons ci ratio: 1.111387e-01	ci left: 8.040451e-04	ci right 8.993227e-04	k: 1242	n:1460000
KS ci ratio: 1.572840e-02	ci left: 4.048787e-02	ci right 4.113039e-02	k: 59580	n:1460000
SYTL1   1460000 perm   1238 sec   (1180 perm/sec)   p_kst 4.080822e-02   p_cons 8.506849e-04   p_joint 3.486301e-04

Joint ci ratio: 1.732109e-01	ci left: 3.181332e-04	ci right 3.791017e-04	k: 511	n:1470000
Cons ci ratio: 1.110051e-01	ci left: 8.005595e-04	ci right 8.953025e-04	k: 1245	n:1470000
KS ci ratio: 1.567605e-02	ci left: 4.048280e-02	ci right 4.112309e-02	k: 59979	n:1470000
SYTL1   1470000 perm   1253 sec   (1173 perm/sec)   p_kst 4.080204e-02   p_cons 8.469388e-04   p_joint 3.476190e-04

Joint ci ratio: 1.722047e-01	ci left: 3.198625e-04	ci right 3.807693e-04	k: 517	n:1480000
Cons ci ratio: 1.106946e-01	ci left: 7.997489e-04	ci right 8.941139e-04	k: 1252	n:1480000
KS ci ratio: 1.562624e-02	ci left: 4.046771e-02	ci right 4.110571e-02	k: 60363	n:1480000
SYTL1   1480000 perm   1268 sec   (1167 perm/sec)   p_kst 4.078581e-02   p_cons 8.459459e-04   p_joint 3.493243e-04

Joint ci ratio: 1.717082e-01	ci left: 3.196425e-04	ci right 3.803138e-04	k: 520	n:1490000
Cons ci ratio: 1.104306e-01	ci left: 7.982969e-04	ci right 8.922514e-04	k: 1258	n:1490000
KS ci ratio: 1.557530e-02	ci left: 4.046085e-02	ci right 4.109664e-02	k: 60759	n:1490000
SYTL1   1490000 perm   1284 sec   (1161 perm/sec)   p_kst 4.077785e-02   p_cons 8.442953e-04   p_joint 3.489933e-04

Joint ci ratio: 1.715438e-01	ci left: 3.181496e-04	ci right 3.784737e-04	k: 521	n:1500000
Cons ci ratio: 1.101249e-01	ci left: 7.975128e-04	ci right 8.910984e-04	k: 1265	n:1500000
KS ci ratio: 1.552208e-02	ci left: 4.046803e-02	ci right 4.110174e-02	k: 61176	n:1500000
SYTL1   1500000 perm   1300 sec   (1154 perm/sec)   p_kst 4.078400e-02   p_cons 8.433333e-04   p_joint 3.473333e-04

Joint ci ratio: 1.713799e-01	ci left: 3.166764e-04	ci right 3.766579e-04	k: 522	n:1510000
Cons ci ratio: 1.099083e-01	ci left: 7.954514e-04	ci right 8.885995e-04	k: 1270	n:1510000
KS ci ratio: 1.546835e-02	ci left: 4.048040e-02	ci right 4.111209e-02	k: 61601	n:1510000
SYTL1   1510000 perm   1315 sec   (1148 perm/sec)   p_kst 4.079536e-02   p_cons 8.410596e-04   p_joint 3.456954e-04

Joint ci ratio: 1.710532e-01	ci left: 3.158524e-04	ci right 3.755521e-04	k: 524	n:1520000
Cons ci ratio: 1.096069e-01	ci left: 7.946970e-04	ci right 8.874851e-04	k: 1277	n:1520000
KS ci ratio: 1.541764e-02	ci left: 4.048015e-02	ci right 4.110976e-02	k: 62007	n:1520000
SYTL1   1520000 perm   1331 sec   (1142 perm/sec)   p_kst 4.079408e-02   p_cons 8.401316e-04   p_joint 3.447368e-04

Joint ci ratio: 1.702444e-01	ci left: 3.169164e-04	ci right 3.765049e-04	k: 529	n:1530000
Cons ci ratio: 1.091381e-01	ci left: 7.964958e-04	ci right 8.890706e-04	k: 1288	n:1530000
KS ci ratio: 1.536691e-02	ci left: 4.048252e-02	ci right 4.111007e-02	k: 62417	n:1530000
SYTL1   1530000 perm   1346 sec   (1137 perm/sec)   p_kst 4.079542e-02   p_cons 8.418301e-04   p_joint 3.457516e-04

Joint ci ratio: 1.699241e-01	ci left: 3.161020e-04	ci right 3.754140e-04	k: 531	n:1540000
Cons ci ratio: 1.088010e-01	ci left: 7.963769e-04	ci right 8.886338e-04	k: 1296	n:1540000
KS ci ratio: 1.531655e-02	ci left: 4.048551e-02	ci right 4.111103e-02	k: 62828	n:1540000
SYTL1   1540000 perm   1362 sec   (1131 perm/sec)   p_kst 4.079740e-02   p_cons 8.415584e-04   p_joint 3.448052e-04

Joint ci ratio: 1.686605e-01	ci left: 3.190052e-04	ci right 3.783717e-04	k: 539	n:1550000
Cons ci ratio: 1.081770e-01	ci left: 8.006540e-04	ci right 8.928405e-04	k: 1311	n:1550000
KS ci ratio: 1.526479e-02	ci left: 4.049810e-02	ci right 4.112168e-02	k: 63254	n:1550000
SYTL1   1550000 perm   1377 sec   (1125 perm/sec)   p_kst 4.080903e-02   p_cons 8.458065e-04   p_joint 3.477419e-04

Joint ci ratio: 1.678850e-01	ci left: 3.200305e-04	ci right 3.792862e-04	k: 544	n:1560000
Cons ci ratio: 1.079306e-01	ci left: 7.992637e-04	ci right 8.910672e-04	k: 1317	n:1560000
KS ci ratio: 1.521244e-02	ci left: 4.051628e-02	ci right 4.113799e-02	k: 63689	n:1560000
SYTL1   1560000 perm   1393 sec   (1120 perm/sec)   p_kst 4.082628e-02   p_cons 8.442308e-04   p_joint 3.487179e-04

Joint ci ratio: 1.674248e-01	ci left: 3.198227e-04	ci right 3.788613e-04	k: 547	n:1570000
Cons ci ratio: 1.075234e-01	ci left: 8.003707e-04	ci right 8.919326e-04	k: 1327	n:1570000
KS ci ratio: 1.516296e-02	ci left: 4.052218e-02	ci right 4.114193e-02	k: 64105	n:1570000
SYTL1   1570000 perm   1409 sec   (1114 perm/sec)   p_kst 4.083121e-02   p_cons 8.452229e-04   p_joint 3.484076e-04

Joint ci ratio: 1.669684e-01	ci left: 3.196178e-04	ci right 3.784415e-04	k: 550	n:1580000
Cons ci ratio: 1.069609e-01	ci left: 8.039283e-04	ci right 8.953857e-04	k: 1341	n:1580000
KS ci ratio: 1.511860e-02	ci left: 4.050404e-02	ci right 4.112169e-02	k: 64483	n:1580000
SYTL1   1580000 perm   1425 sec   (1108 perm/sec)   p_kst 4.081203e-02   p_cons 8.487342e-04   p_joint 3.481013e-04

Joint ci ratio: 1.663656e-01	ci left: 3.200184e-04	ci right 3.786820e-04	k: 554	n:1590000
Cons ci ratio: 1.066436e-01	ci left: 8.037691e-04	ci right 8.949201e-04	k: 1349	n:1590000
KS ci ratio: 1.506822e-02	ci left: 4.051935e-02	ci right 4.113515e-02	k: 64914	n:1590000
SYTL1   1590000 perm   1442 sec   (1103 perm/sec)   p_kst 4.082642e-02   p_cons 8.484277e-04   p_joint 3.484277e-04

Joint ci ratio: 1.657693e-01	ci left: 3.204144e-04	ci right 3.789190e-04	k: 558	n:1600000
Cons ci ratio: 1.062898e-01	ci left: 8.042208e-04	ci right 8.951016e-04	k: 1358	n:1600000
KS ci ratio: 1.502433e-02	ci left: 4.050333e-02	ci right 4.111708e-02	k: 65295	n:1600000
SYTL1   1600000 perm   1458 sec   (1097 perm/sec)   p_kst 4.080938e-02   p_cons 8.487500e-04   p_joint 3.487500e-04

Joint ci ratio: 1.653263e-01	ci left: 3.202104e-04	ci right 3.785060e-04	k: 561	n:1610000
Cons ci ratio: 1.060172e-01	ci left: 8.034580e-04	ci right 8.940052e-04	k: 1365	n:1610000
KS ci ratio: 1.497535e-02	ci left: 4.051598e-02	ci right 4.112791e-02	k: 65722	n:1610000
SYTL1   1610000 perm   1476 sec   (1091 perm/sec)   p_kst 4.082112e-02   p_cons 8.478261e-04   p_joint 3.484472e-04

Joint ci ratio: 1.653265e-01	ci left: 3.182338e-04	ci right 3.761695e-04	k: 561	n:1620000
Cons ci ratio: 1.058238e-01	ci left: 8.015030e-04	ci right 8.916548e-04	k: 1370	n:1620000
KS ci ratio: 1.492991e-02	ci left: 4.051249e-02	ci right 4.112249e-02	k: 66123	n:1620000
SYTL1   1620000 perm   1493 sec   (1085 perm/sec)   p_kst 4.081667e-02   p_cons 8.456790e-04   p_joint 3.462963e-04

Joint ci ratio: 1.648870e-01	ci left: 3.180459e-04	ci right 3.757782e-04	k: 564	n:1630000
Cons ci ratio: 1.055931e-01	ci left: 8.001695e-04	ci right 8.899629e-04	k: 1376	n:1630000
KS ci ratio: 1.488499e-02	ci left: 4.050843e-02	ci right 4.111652e-02	k: 66523	n:1630000
SYTL1   1630000 perm   1509 sec   (1080 perm/sec)   p_kst 4.081166e-02   p_cons 8.441718e-04   p_joint 3.460123e-04

Joint ci ratio: 1.645960e-01	ci left: 3.172758e-04	ci right 3.747566e-04	k: 566	n:1640000
Cons ci ratio: 1.051737e-01	ci left: 8.018209e-04	ci right 8.914203e-04	k: 1387	n:1640000
KS ci ratio: 1.483574e-02	ci left: 4.052933e-02	ci right 4.113571e-02	k: 66964	n:1640000
SYTL1   1640000 perm   1526 sec   (1075 perm/sec)   p_kst 4.083171e-02   p_cons 8.457317e-04   p_joint 3.451220e-04

Joint ci ratio: 1.643066e-01	ci left: 3.165151e-04	ci right 3.737474e-04	k: 568	n:1650000
Cons ci ratio: 1.047219e-01	ci left: 8.040433e-04	ci right 8.934812e-04	k: 1399	n:1650000
KS ci ratio: 1.479224e-02	ci left: 4.052221e-02	ci right 4.112668e-02	k: 67359	n:1650000
SYTL1   1650000 perm   1543 sec   (1070 perm/sec)   p_kst 4.082364e-02   p_cons 8.478788e-04   p_joint 3.442424e-04

Joint ci ratio: 1.638751e-01	ci left: 3.163414e-04	ci right 3.733773e-04	k: 571	n:1660000
Cons ci ratio: 1.043869e-01	ci left: 8.044796e-04	ci right 8.936622e-04	k: 1408	n:1660000
KS ci ratio: 1.474572e-02	ci left: 4.053318e-02	ci right 4.113590e-02	k: 67784	n:1660000
SYTL1   1660000 perm   1559 sec   (1065 perm/sec)   p_kst 4.083373e-02   p_cons 8.481928e-04   p_joint 3.439759e-04

Joint ci ratio: 1.633051e-01	ci left: 3.167443e-04	ci right 3.736346e-04	k: 575	n:1670000
Cons ci ratio: 1.041286e-01	ci left: 8.037447e-04	ci right 8.926118e-04	k: 1415	n:1670000
KS ci ratio: 1.470244e-02	ci left: 4.052910e-02	ci right 4.112998e-02	k: 68184	n:1670000
SYTL1   1670000 perm   1576 sec   (1060 perm/sec)   p_kst 4.082874e-02   p_cons 8.473054e-04   p_joint 3.443114e-04

Joint ci ratio: 1.630224e-01	ci left: 3.160008e-04	ci right 3.726497e-04	k: 577	n:1680000
Cons ci ratio: 1.038722e-01	ci left: 8.030187e-04	ci right 8.915737e-04	k: 1422	n:1680000
KS ci ratio: 1.465754e-02	ci left: 4.053575e-02	ci right 4.113488e-02	k: 68602	n:1680000
SYTL1   1680000 perm   1593 sec   (1055 perm/sec)   p_kst 4.083452e-02   p_cons 8.464286e-04   p_joint 3.434524e-04

Joint ci ratio: 1.626010e-01	ci left: 3.158338e-04	ci right 3.722921e-04	k: 580	n:1690000
Cons ci ratio: 1.035453e-01	ci left: 8.034545e-04	ci right 8.917616e-04	k: 1431	n:1690000
KS ci ratio: 1.461238e-02	ci left: 4.054587e-02	ci right 4.114328e-02	k: 69026	n:1690000
SYTL1   1690000 perm   1610 sec   (1050 perm/sec)   p_kst 4.084379e-02   p_cons 8.467456e-04   p_joint 3.431953e-04

Joint ci ratio: 1.623219e-01	ci left: 3.151046e-04	ci right 3.713264e-04	k: 582	n:1700000
Cons ci ratio: 1.032932e-01	ci left: 8.027394e-04	ci right 8.907401e-04	k: 1438	n:1700000
KS ci ratio: 1.457004e-02	ci left: 4.054297e-02	ci right 4.113859e-02	k: 69428	n:1700000
SYTL1   1700000 perm   1627 sec   (1045 perm/sec)   p_kst 4.084000e-02   p_cons 8.458824e-04   p_joint 3.423529e-04

Joint ci ratio: 1.619059e-01	ci left: 3.149451e-04	ci right 3.709804e-04	k: 585	n:1710000
Cons ci ratio: 1.028651e-01	ci left: 8.048817e-04	ci right 8.927294e-04	k: 1450	n:1710000
KS ci ratio: 1.452797e-02	ci left: 4.054069e-02	ci right 4.113455e-02	k: 69831	n:1710000
SYTL1   1710000 perm   1644 sec   (1040 perm/sec)   p_kst 4.083684e-02   p_cons 8.479532e-04   p_joint 3.421053e-04

Joint ci ratio: 1.614931e-01	ci left: 3.147876e-04	ci right 3.706382e-04	k: 588	n:1720000
Cons ci ratio: 1.026531e-01	ci left: 8.036008e-04	ci right 8.911172e-04	k: 1456	n:1720000
KS ci ratio: 1.448131e-02	ci left: 4.056509e-02	ci right 4.115738e-02	k: 70280	n:1720000
SYTL1   1720000 perm   1662 sec   (1035 perm/sec)   p_kst 4.086047e-02   p_cons 8.465116e-04   p_joint 3.418605e-04

Joint ci ratio: 1.608119e-01	ci left: 3.157417e-04	ci right 3.715024e-04	k: 593	n:1730000
Cons ci ratio: 1.023375e-01	ci left: 8.040247e-04	ci right 8.913018e-04	k: 1465	n:1730000
KS ci ratio: 1.443935e-02	ci left: 4.056618e-02	ci right 4.115675e-02	k: 70689	n:1730000
SYTL1   1730000 perm   1679 sec   (1030 perm/sec)   p_kst 4.086069e-02   p_cons 8.468208e-04   p_joint 3.427746e-04

Joint ci ratio: 1.600057e-01	ci left: 3.172369e-04	ci right 3.729539e-04	k: 599	n:1740000
Cons ci ratio: 1.020248e-01	ci left: 8.044441e-04	ci right 8.914839e-04	k: 1474	n:1740000
KS ci ratio: 1.439786e-02	ci left: 4.056667e-02	ci right 4.115554e-02	k: 71097	n:1740000
SYTL1   1740000 perm   1697 sec   (1025 perm/sec)   p_kst 4.086034e-02   p_cons 8.471264e-04   p_joint 3.442529e-04

Joint ci ratio: 1.593431e-01	ci left: 3.181671e-04	ci right 3.737940e-04	k: 604	n:1750000
Cons ci ratio: 1.015780e-01	ci left: 8.070868e-04	ci right 8.940073e-04	k: 1487	n:1750000
KS ci ratio: 1.435642e-02	ci left: 4.056888e-02	ci right 4.115607e-02	k: 71508	n:1750000
SYTL1   1750000 perm   1714 sec   (1021 perm/sec)   p_kst 4.086171e-02   p_cons 8.497143e-04   p_joint 3.451429e-04

Joint ci ratio: 1.586886e-01	ci left: 3.190873e-04	ci right 3.746240e-04	k: 609	n:1760000
Cons ci ratio: 1.013061e-01	ci left: 8.069312e-04	ci right 8.935885e-04	k: 1495	n:1760000
KS ci ratio: 1.431242e-02	ci left: 4.058691e-02	ci right 4.117255e-02	k: 71947	n:1760000
SYTL1   1760000 perm   1732 sec   (1016 perm/sec)   p_kst 4.087898e-02   p_cons 8.494318e-04   p_joint 3.460227e-04

Joint ci ratio: 1.574034e-01	ci left: 3.227108e-04	ci right 3.783804e-04	k: 619	n:1770000
Cons ci ratio: 1.009021e-01	ci left: 8.089805e-04	ci right 8.954909e-04	k: 1507	n:1770000
KS ci ratio: 1.427089e-02	ci left: 4.059349e-02	ci right 4.117751e-02	k: 72366	n:1770000
SYTL1   1770000 perm   1749 sec   (1012 perm/sec)   p_kst 4.088475e-02   p_cons 8.514124e-04   p_joint 3.497175e-04

Joint ci ratio: 1.571502e-01	ci left: 3.219772e-04	ci right 3.774224e-04	k: 621	n:1780000
Cons ci ratio: 1.006355e-01	ci left: 8.088168e-04	ci right 8.950677e-04	k: 1515	n:1780000
KS ci ratio: 1.422981e-02	ci left: 4.059943e-02	ci right 4.118184e-02	k: 72784	n:1780000
SYTL1   1780000 perm   1767 sec   (1007 perm/sec)   p_kst 4.088989e-02   p_cons 8.511236e-04   p_joint 3.488764e-04

Joint ci ratio: 1.566473e-01	ci left: 3.223254e-04	ci right 3.776362e-04	k: 625	n:1790000
Cons ci ratio: 1.003052e-01	ci left: 8.097445e-04	ci right 8.957942e-04	k: 1525	n:1790000
KS ci ratio: 1.418949e-02	ci left: 4.060308e-02	ci right 4.118388e-02	k: 73198	n:1790000
SYTL1   1790000 perm   1785 sec   (1003 perm/sec)   p_kst 4.089274e-02   p_cons 8.519553e-04   p_joint 3.491620e-04

Joint ci ratio: 1.563977e-01	ci left: 3.216023e-04	ci right 3.766928e-04	k: 627	n:1800000
Cons ci ratio: 1.001414e-01	ci left: 8.079540e-04	ci right 8.936650e-04	k: 1530	n:1800000
KS ci ratio: 1.414921e-02	ci left: 4.060835e-02	ci right 4.118757e-02	k: 73615	n:1800000
SYTL1   1800000 perm   1803 sec   (998 perm/sec)   p_kst 4.089722e-02   p_cons 8.500000e-04   p_joint 3.483333e-04

Joint ci ratio: 1.556558e-01	ci left: 3.230110e-04	ci right 3.780559e-04	k: 633	n:1810000
Cons ci ratio: 9.975112e-02	ci left: 8.099544e-04	ci right 8.955231e-04	k: 1542	n:1810000
KS ci ratio: 1.410997e-02	ci left: 4.060972e-02	ci right 4.118733e-02	k: 74025	n:1810000
SYTL1   1810000 perm   1821 sec   (994 perm/sec)   p_kst 4.089779e-02   p_cons 8.519337e-04   p_joint 3.497238e-04

Joint ci ratio: 1.550455e-01	ci left: 3.238766e-04	ci right 3.788326e-04	k: 638	n:1820000
Cons ci ratio: 9.952566e-02	ci left: 8.092544e-04	ci right 8.945446e-04	k: 1549	n:1820000
KS ci ratio: 1.406948e-02	ci left: 4.061983e-02	ci right 4.119592e-02	k: 74451	n:1820000
SYTL1   1820000 perm   1839 sec   (989 perm/sec)   p_kst 4.090714e-02   p_cons 8.510989e-04   p_joint 3.505495e-04

Joint ci ratio: 1.548035e-01	ci left: 3.231573e-04	ci right 3.778977e-04	k: 640	n:1830000
Cons ci ratio: 9.930173e-02	ci left: 8.085622e-04	ci right 8.935766e-04	k: 1556	n:1830000
KS ci ratio: 1.403031e-02	ci left: 4.062439e-02	ci right 4.119892e-02	k: 74867	n:1830000
SYTL1   1830000 perm   1858 sec   (985 perm/sec)   p_kst 4.091093e-02   p_cons 8.502732e-04   p_joint 3.497268e-04

Joint ci ratio: 1.540840e-01	ci left: 3.245359e-04	ci right 3.792307e-04	k: 646	n:1840000
Cons ci ratio: 9.901595e-02	ci left: 8.089379e-04	ci right 8.937328e-04	k: 1565	n:1840000
KS ci ratio: 1.399195e-02	ci left: 4.062619e-02	ci right 4.119917e-02	k: 75278	n:1840000
SYTL1   1840000 perm   1876 sec   (981 perm/sec)   p_kst 4.091196e-02   p_cons 8.505435e-04   p_joint 3.510870e-04

Joint ci ratio: 1.536098e-01	ci left: 3.248606e-04	ci right 3.794261e-04	k: 650	n:1850000
Cons ci ratio: 9.866995e-02	ci left: 8.103642e-04	ci right 8.949947e-04	k: 1576	n:1850000
KS ci ratio: 1.395073e-02	ci left: 4.064576e-02	ci right 4.121730e-02	k: 75722	n:1850000
SYTL1   1850000 perm   1895 sec   (976 perm/sec)   p_kst 4.093081e-02   p_cons 8.518919e-04   p_joint 3.513514e-04

Joint ci ratio: 1.534921e-01	ci left: 3.236310e-04	ci right 3.779445e-04	k: 651	n:1860000
Cons ci ratio: 9.854517e-02	ci left: 8.081049e-04	ci right 8.923865e-04	k: 1580	n:1860000
KS ci ratio: 1.391149e-02	ci left: 4.065600e-02	ci right 4.122607e-02	k: 76149	n:1860000
SYTL1   1860000 perm   1914 sec   (972 perm/sec)   p_kst 4.094032e-02   p_cons 8.494624e-04   p_joint 3.500000e-04

Joint ci ratio: 1.532573e-01	ci left: 3.229288e-04	ci right 3.770340e-04	k: 653	n:1870000
Cons ci ratio: 9.820407e-02	ci left: 8.095211e-04	ci right 8.936413e-04	k: 1591	n:1870000
KS ci ratio: 1.387098e-02	ci left: 4.067520e-02	ci right 4.124387e-02	k: 76593	n:1870000
SYTL1   1870000 perm   1932 sec   (968 perm/sec)   p_kst 4.095882e-02   p_cons 8.508021e-04   p_joint 3.491979e-04

Joint ci ratio: 1.530235e-01	ci left: 3.222342e-04	ci right 3.761330e-04	k: 655	n:1880000
Cons ci ratio: 9.792764e-02	ci left: 8.098850e-04	ci right 8.937925e-04	k: 1600	n:1880000
KS ci ratio: 1.383466e-02	ci left: 4.067246e-02	ci right 4.123959e-02	k: 76996	n:1880000
SYTL1   1880000 perm   1951 sec   (964 perm/sec)   p_kst 4.095532e-02   p_cons 8.510638e-04   p_joint 3.484043e-04

Joint ci ratio: 1.526749e-01	ci left: 3.220558e-04	ci right 3.757909e-04	k: 658	n:1890000
Cons ci ratio: 9.771430e-02	ci left: 8.092130e-04	ci right 8.928578e-04	k: 1607	n:1890000
KS ci ratio: 1.379685e-02	ci left: 4.067977e-02	ci right 4.124544e-02	k: 77418	n:1890000
SYTL1   1890000 perm   1970 sec   (959 perm/sec)   p_kst 4.096190e-02   p_cons 8.502646e-04   p_joint 3.481481e-04

Joint ci ratio: 1.522136e-01	ci left: 3.223858e-04	ci right 3.759985e-04	k: 662	n:1900000
Cons ci ratio: 9.747214e-02	ci left: 8.090617e-04	ci right 8.924718e-04	k: 1615	n:1900000
KS ci ratio: 1.375945e-02	ci left: 4.068649e-02	ci right 4.125070e-02	k: 77839	n:1900000
SYTL1   1900000 perm   1989 sec   (955 perm/sec)   p_kst 4.096789e-02   p_cons 8.500000e-04   p_joint 3.484211e-04

Joint ci ratio: 1.522137e-01	ci left: 3.206978e-04	ci right 3.740300e-04	k: 662	n:1910000
Cons ci ratio: 9.738193e-02	ci left: 8.063582e-04	ci right 8.894082e-04	k: 1618	n:1910000
KS ci ratio: 1.372308e-02	ci left: 4.068896e-02	ci right 4.125170e-02	k: 78252	n:1910000
SYTL1   1910000 perm   2008 sec   (951 perm/sec)   p_kst 4.096963e-02   p_cons 8.471204e-04   p_joint 3.465969e-04

Joint ci ratio: 1.518705e-01	ci left: 3.205306e-04	ci right 3.737038e-04	k: 665	n:1920000
Cons ci ratio: 9.729197e-02	ci left: 8.036828e-04	ci right 8.863764e-04	k: 1621	n:1920000
KS ci ratio: 1.368972e-02	ci left: 4.067583e-02	ci right 4.123702e-02	k: 78635	n:1920000
SYTL1   1920000 perm   2027 sec   (947 perm/sec)   p_kst 4.095573e-02   p_cons 8.442708e-04   p_joint 3.463542e-04

Joint ci ratio: 1.514165e-01	ci left: 3.208637e-04	ci right 3.739186e-04	k: 669	n:1930000
Cons ci ratio: 9.708275e-02	ci left: 8.030574e-04	ci right 8.854989e-04	k: 1628	n:1930000
KS ci ratio: 1.365390e-02	ci left: 4.067833e-02	ci right 4.123807e-02	k: 79048	n:1930000
SYTL1   1930000 perm   2046 sec   (943 perm/sec)   p_kst 4.095751e-02   p_cons 8.435233e-04   p_joint 3.466321e-04

Joint ci ratio: 1.508546e-01	ci left: 3.216896e-04	ci right 3.746659e-04	k: 674	n:1940000
Cons ci ratio: 9.681565e-02	ci left: 8.034446e-04	ci right 8.856861e-04	k: 1637	n:1940000
KS ci ratio: 1.361862e-02	ci left: 4.067927e-02	ci right 4.123757e-02	k: 79458	n:1940000
SYTL1   1940000 perm   2065 sec   (940 perm/sec)   p_kst 4.095773e-02   p_cons 8.438144e-04   p_joint 3.474227e-04

Joint ci ratio: 1.505205e-01	ci left: 3.215204e-04	ci right 3.743410e-04	k: 677	n:1950000
Cons ci ratio: 9.672725e-02	ci left: 8.008256e-04	ci right 8.827198e-04	k: 1640	n:1950000
KS ci ratio: 1.358043e-02	ci left: 4.069860e-02	ci right 4.125558e-02	k: 79904	n:1950000
SYTL1   1950000 perm   2084 sec   (936 perm/sec)   p_kst 4.097641e-02   p_cons 8.410256e-04   p_joint 3.471795e-04

Joint ci ratio: 1.501886e-01	ci left: 3.213530e-04	ci right 3.740192e-04	k: 680	n:1960000
Cons ci ratio: 9.646308e-02	ci left: 8.012206e-04	ci right 8.829189e-04	k: 1649	n:1960000
KS ci ratio: 1.354678e-02	ci left: 4.069333e-02	ci right 4.124885e-02	k: 80302	n:1960000
SYTL1   1960000 perm   2104 sec   (932 perm/sec)   p_kst 4.097041e-02   p_cons 8.413265e-04   p_joint 3.469388e-04

Joint ci ratio: 1.500785e-01	ci left: 3.202103e-04	ci right 3.726474e-04	k: 681	n:1970000
Cons ci ratio: 9.634647e-02	ci left: 7.991350e-04	ci right 8.805165e-04	k: 1653	n:1970000
KS ci ratio: 1.351320e-02	ci left: 4.068912e-02	ci right 4.124320e-02	k: 80702	n:1970000
SYTL1   1970000 perm   2123 sec   (928 perm/sec)   p_kst 4.096548e-02   p_cons 8.390863e-04   p_joint 3.456853e-04

Joint ci ratio: 1.498590e-01	ci left: 3.195653e-04	ci right 3.718133e-04	k: 683	n:1980000
Cons ci ratio: 9.608539e-02	ci left: 7.995351e-04	ci right 8.807242e-04	k: 1662	n:1980000
KS ci ratio: 1.347736e-02	ci left: 4.069956e-02	ci right 4.125229e-02	k: 81131	n:1980000
SYTL1   1980000 perm   2143 sec   (924 perm/sec)   p_kst 4.097525e-02   p_cons 8.393939e-04   p_joint 3.449495e-04

Joint ci ratio: 1.497497e-01	ci left: 3.184431e-04	ci right 3.704662e-04	k: 684	n:1990000
Cons ci ratio: 9.588384e-02	ci left: 7.989504e-04	ci right 8.799005e-04	k: 1669	n:1990000
KS ci ratio: 1.344240e-02	ci left: 4.070638e-02	ci right 4.125777e-02	k: 81553	n:1990000
SYTL1   1990000 perm   2163 sec   (920 perm/sec)   p_kst 4.098141e-02   p_cons 8.386935e-04   p_joint 3.437186e-04

Joint ci ratio: 1.744156e-01	ci left: 2.304792e-04	ci right 2.749889e-04	k: 504	n:2000000
Cons ci ratio: 9.574070e-02	ci left: 7.973957e-04	ci right 8.780609e-04	k: 1674	n:2000000
KS ci ratio: 1.340916e-02	ci left: 4.070467e-02	ci right 4.125466e-02	k: 81958	n:2000000
SYTL1   2000000 perm   2183 sec   (916 perm/sec)   p_kst 4.097900e-02   p_cons 8.370000e-04   p_joint 2.520000e-04

Joint ci ratio: 1.737289e-01	ci left: 2.312359e-04	ci right 2.756974e-04	k: 508	n:2010000
Cons ci ratio: 9.554131e-02	ci left: 7.968279e-04	ci right 8.772583e-04	k: 1681	n:2010000
KS ci ratio: 1.337456e-02	ci left: 4.071240e-02	ci right 4.126106e-02	k: 82382	n:2010000
SYTL1   2010000 perm   2202 sec   (913 perm/sec)   p_kst 4.098607e-02   p_cons 8.363184e-04   p_joint 2.527363e-04

Joint ci ratio: 1.733886e-01	ci left: 2.310383e-04	ci right 2.753657e-04	k: 510	n:2020000
Cons ci ratio: 9.525852e-02	ci left: 7.977156e-04	ci right 8.779840e-04	k: 1691	n:2020000
KS ci ratio: 1.334165e-02	ci left: 4.071167e-02	ci right 4.125896e-02	k: 82789	n:2020000
SYTL1   2020000 perm   2222 sec   (909 perm/sec)   p_kst 4.098465e-02   p_cons 8.371287e-04   p_joint 2.524752e-04

Joint ci ratio: 1.727139e-01	ci left: 2.317853e-04	ci right 2.760649e-04	k: 514	n:2030000
Cons ci ratio: 9.503412e-02	ci left: 7.976331e-04	ci right 8.776936e-04	k: 1699	n:2030000
KS ci ratio: 1.331033e-02	ci left: 4.070308e-02	ci right 4.124897e-02	k: 83180	n:2030000
SYTL1   2030000 perm   2243 sec   (905 perm/sec)   p_kst 4.097537e-02   p_cons 8.369458e-04   p_joint 2.532020e-04

Joint ci ratio: 1.725465e-01	ci left: 2.311181e-04	ci right 2.752230e-04	k: 515	n:2040000
Cons ci ratio: 9.478354e-02	ci left: 7.980302e-04	ci right 8.779076e-04	k: 1708	n:2040000
KS ci ratio: 1.328195e-02	ci left: 4.067846e-02	ci right 4.122284e-02	k: 83538	n:2040000
SYTL1   2040000 perm   2263 sec   (902 perm/sec)   p_kst 4.095000e-02   p_cons 8.372549e-04   p_joint 2.524510e-04

Joint ci ratio: 1.855971e-01	ci left: 1.973725e-04	ci right 2.382076e-04	k: 445	n:2050000
Cons ci ratio: 9.456248e-02	ci left: 7.979474e-04	ci right 8.776200e-04	k: 1716	n:2050000
KS ci ratio: 1.324980e-02	ci left: 4.067742e-02	ci right 4.122046e-02	k: 83944	n:2050000
SYTL1   2050000 perm   2283 sec   (898 perm/sec)   p_kst 4.094829e-02   p_cons 8.370732e-04   p_joint 2.170732e-04

Joint ci ratio: 1.851824e-01	ci left: 1.973402e-04	ci right 2.380672e-04	k: 447	n:2060000
Cons ci ratio: 9.431560e-02	ci left: 7.983396e-04	ci right 8.778317e-04	k: 1725	n:2060000
KS ci ratio: 1.321732e-02	ci left: 4.067978e-02	ci right 4.122151e-02	k: 84357	n:2060000
SYTL1   2060000 perm   2303 sec   (894 perm/sec)   p_kst 4.095000e-02   p_cons 8.373786e-04   p_joint 2.169903e-04

Joint ci ratio: 1.847704e-01	ci left: 1.973083e-04	ci right 2.379279e-04	k: 449	n:2070000
Cons ci ratio: 9.396231e-02	ci left: 8.006153e-04	ci right 8.800190e-04	k: 1738	n:2070000
KS ci ratio: 1.318361e-02	ci left: 4.069079e-02	ci right 4.123127e-02	k: 84788	n:2070000
SYTL1   2070000 perm   2324 sec   (891 perm/sec)   p_kst 4.096039e-02   p_cons 8.396135e-04   p_joint 2.169082e-04

Joint ci ratio: 1.843612e-01	ci left: 1.972768e-04	ci right 2.377900e-04	k: 451	n:2080000
Cons ci ratio: 9.377379e-02	ci left: 8.000525e-04	ci right 8.792325e-04	k: 1745	n:2080000
KS ci ratio: 1.315354e-02	ci left: 4.068156e-02	ci right 4.122068e-02	k: 85177	n:2080000
SYTL1   2080000 perm   2345 sec   (887 perm/sec)   p_kst 4.095048e-02   p_cons 8.389423e-04   p_joint 2.168269e-04

Joint ci ratio: 1.843613e-01	ci left: 1.963329e-04	ci right 2.366522e-04	k: 451	n:2090000
Cons ci ratio: 9.366666e-02	ci left: 7.980935e-04	ci right 8.769844e-04	k: 1749	n:2090000
KS ci ratio: 1.312343e-02	ci left: 4.067385e-02	ci right 4.121163e-02	k: 85569	n:2090000
SYTL1   2090000 perm   2365 sec   (884 perm/sec)   p_kst 4.094211e-02   p_cons 8.368421e-04   p_joint 2.157895e-04

Joint ci ratio: 1.839548e-01	ci left: 1.963064e-04	ci right 2.365216e-04	k: 453	n:2100000
Cons ci ratio: 9.340015e-02	ci left: 7.989436e-04	ci right 8.776815e-04	k: 1759	n:2100000
KS ci ratio: 1.309314e-02	ci left: 4.066860e-02	ci right 4.120505e-02	k: 85966	n:2100000
SYTL1   2100000 perm   2386 sec   (880 perm/sec)   p_kst 4.093619e-02   p_cons 8.376190e-04   p_joint 2.157143e-04

Joint ci ratio: 1.833500e-01	ci left: 1.967325e-04	ci right 2.368877e-04	k: 456	n:2110000
Cons ci ratio: 9.310958e-02	ci left: 8.002488e-04	ci right 8.788567e-04	k: 1770	n:2110000
KS ci ratio: 1.306021e-02	ci left: 4.068040e-02	ci right 4.121565e-02	k: 86399	n:2110000
SYTL1   2110000 perm   2407 sec   (877 perm/sec)   p_kst 4.094739e-02   p_cons 8.388626e-04   p_joint 2.161137e-04

Joint ci ratio: 1.831497e-01	ci left: 1.962546e-04	ci right 2.362636e-04	k: 457	n:2120000
Cons ci ratio: 9.284778e-02	ci left: 8.010814e-04	ci right 8.795377e-04	k: 1780	n:2120000
KS ci ratio: 1.302933e-02	ci left: 4.068128e-02	ci right 4.121526e-02	k: 86809	n:2120000
SYTL1   2120000 perm   2428 sec   (873 perm/sec)   p_kst 4.094764e-02   p_cons 8.396226e-04   p_joint 2.155660e-04

Joint ci ratio: 1.827512e-01	ci left: 1.962292e-04	ci right 2.361363e-04	k: 459	n:2130000
Cons ci ratio: 9.263995e-02	ci left: 8.009892e-04	ci right 8.792514e-04	k: 1788	n:2130000
KS ci ratio: 1.299688e-02	ci left: 4.069291e-02	ci right 4.122571e-02	k: 87242	n:2130000
SYTL1   2130000 perm   2448 sec   (870 perm/sec)   p_kst 4.095869e-02   p_cons 8.394366e-04   p_joint 2.154930e-04

Joint ci ratio: 1.819617e-01	ci left: 1.970961e-04	ci right 2.369872e-04	k: 463	n:2140000
Cons ci ratio: 9.230509e-02	ci left: 8.031806e-04	ci right 8.813579e-04	k: 1801	n:2140000
KS ci ratio: 1.296761e-02	ci left: 4.068674e-02	ci right 4.121825e-02	k: 87637	n:2140000
SYTL1   2140000 perm   2470 sec   (866 perm/sec)   p_kst 4.095187e-02   p_cons 8.415888e-04   p_joint 2.163551e-04

Joint ci ratio: 1.815708e-01	ci left: 1.970672e-04	ci right 2.368575e-04	k: 465	n:2150000
Cons ci ratio: 9.199920e-02	ci left: 8.048977e-04	ci right 8.829685e-04	k: 1813	n:2150000
KS ci ratio: 1.293730e-02	ci left: 4.068804e-02	ci right 4.121831e-02	k: 88048	n:2150000
SYTL1   2150000 perm   2491 sec   (863 perm/sec)   p_kst 4.095256e-02   p_cons 8.432558e-04   p_joint 2.162791e-04

Joint ci ratio: 1.522168e-01	ci left: 2.835796e-04	ci right 3.307400e-04	k: 662	n:2160000
Cons ci ratio: 9.184748e-02	ci left: 8.038852e-04	ci right 8.817224e-04	k: 1819	n:2160000
KS ci ratio: 1.290576e-02	ci left: 4.069810e-02	ci right 4.122720e-02	k: 88478	n:2160000
SYTL1   2160000 perm   2512 sec   (860 perm/sec)   p_kst 4.096204e-02   p_cons 8.421296e-04   p_joint 3.064815e-04

Joint ci ratio: 1.519878e-01	ci left: 2.831594e-04	ci right 3.301726e-04	k: 664	n:2170000
Cons ci ratio: 9.167138e-02	ci left: 8.033324e-04	ci right 8.809589e-04	k: 1826	n:2170000
KS ci ratio: 1.287453e-02	ci left: 4.070761e-02	ci right 4.123555e-02	k: 88907	n:2170000
SYTL1   2170000 perm   2534 sec   (856 perm/sec)   p_kst 4.097097e-02   p_cons 8.414747e-04   p_joint 3.059908e-04

Joint ci ratio: 1.519879e-01	ci left: 2.818605e-04	ci right 3.286580e-04	k: 664	n:2180000
Cons ci ratio: 9.157129e-02	ci left: 8.014402e-04	ci right 8.787948e-04	k: 1830	n:2180000
KS ci ratio: 1.284479e-02	ci left: 4.070926e-02	ci right 4.123599e-02	k: 89319	n:2180000
SYTL1   2180000 perm   2555 sec   (853 perm/sec)   p_kst 4.097202e-02   p_cons 8.394495e-04   p_joint 3.045872e-04

Joint ci ratio: 1.802223e-01	ci left: 1.965194e-04	ci right 2.358723e-04	k: 472	n:2190000
Cons ci ratio: 9.147152e-02	ci left: 7.995653e-04	ci right 8.766503e-04	k: 1834	n:2190000
KS ci ratio: 1.281586e-02	ci left: 4.070726e-02	ci right 4.123277e-02	k: 89723	n:2190000
SYTL1   2190000 perm   2576 sec   (850 perm/sec)   p_kst 4.096941e-02   p_cons 8.374429e-04   p_joint 2.155251e-04

Joint ci ratio: 1.513068e-01	ci left: 2.819219e-04	ci right 3.285009e-04	k: 670	n:2200000
Cons ci ratio: 9.132239e-02	ci left: 7.985958e-04	ci right 8.754552e-04	k: 1840	n:2200000
KS ci ratio: 1.278675e-02	ci left: 4.070754e-02	ci right 4.123185e-02	k: 90132	n:2200000
SYTL1   2200000 perm   2598 sec   (847 perm/sec)   p_kst 4.096909e-02   p_cons 8.363636e-04   p_joint 3.045455e-04

Joint ci ratio: 1.509697e-01	ci left: 2.819524e-04	ci right 3.284232e-04	k: 673	n:2210000
Cons ci ratio: 9.102614e-02	ci left: 8.002884e-04	ci right 8.770474e-04	k: 1852	n:2210000
KS ci ratio: 1.275747e-02	ci left: 4.071008e-02	ci right 4.123321e-02	k: 90546	n:2210000
SYTL1   2210000 perm   2620 sec   (844 perm/sec)   p_kst 4.097104e-02   p_cons 8.380090e-04   p_joint 3.045249e-04

Joint ci ratio: 1.504128e-01	ci left: 2.828496e-04	ci right 3.292810e-04	k: 678	n:2220000
Cons ci ratio: 9.068409e-02	ci left: 8.028465e-04	ci right 8.795463e-04	k: 1866	n:2220000
KS ci ratio: 1.273051e-02	ci left: 4.069957e-02	ci right 4.122145e-02	k: 90931	n:2220000
SYTL1   2220000 perm   2641 sec   (841 perm/sec)   p_kst 4.095991e-02   p_cons 8.405405e-04   p_joint 3.054054e-04

Joint ci ratio: 1.501918e-01	ci left: 2.824444e-04	ci right 3.287349e-04	k: 680	n:2230000
Cons ci ratio: 9.049044e-02	ci left: 8.027525e-04	ci right 8.792708e-04	k: 1874	n:2230000
KS ci ratio: 1.270372e-02	ci left: 4.068915e-02	ci right 4.120980e-02	k: 91316	n:2230000
SYTL1   2230000 perm   2663 sec   (837 perm/sec)   p_kst 4.094888e-02   p_cons 8.403587e-04   p_joint 3.049327e-04

Joint ci ratio: 1.500817e-01	ci left: 2.816131e-04	ci right 3.277306e-04	k: 681	n:2240000
Cons ci ratio: 9.034605e-02	ci left: 8.017868e-04	ci right 8.780846e-04	k: 1880	n:2240000
KS ci ratio: 1.267443e-02	ci left: 4.069530e-02	ci right 4.121482e-02	k: 91738	n:2240000
SYTL1   2240000 perm   2685 sec   (834 perm/sec)   p_kst 4.095446e-02   p_cons 8.392857e-04   p_joint 3.040179e-04

Joint ci ratio: 1.417038e-01	ci left: 3.159054e-04	ci right 3.645069e-04	k: 764	n:2250000
Cons ci ratio: 9.005916e-02	ci left: 8.034363e-04	ci right 8.796356e-04	k: 1892	n:2250000
KS ci ratio: 1.264356e-02	ci left: 4.071247e-02	ci right 4.123093e-02	k: 92185	n:2250000
SYTL1   2250000 perm   2707 sec   (831 perm/sec)   p_kst 4.097111e-02   p_cons 8.408889e-04   p_joint 3.395556e-04

Joint ci ratio: 1.416113e-01	ci left: 3.149343e-04	ci right 3.633522e-04	k: 765	n:2260000
Cons ci ratio: 8.986947e-02	ci left: 8.033415e-04	ci right 8.793629e-04	k: 1900	n:2260000
KS ci ratio: 1.261532e-02	ci left: 4.071450e-02	ci right 4.123181e-02	k: 92598	n:2260000
SYTL1   2260000 perm   2729 sec   (828 perm/sec)   p_kst 4.097257e-02   p_cons 8.407080e-04   p_joint 3.384956e-04

Joint ci ratio: 1.492091e-01	ci left: 2.812836e-04	ci right 3.270554e-04	k: 689	n:2270000
Cons ci ratio: 8.972803e-02	ci left: 8.023863e-04	ci right 8.781915e-04	k: 1906	n:2270000
KS ci ratio: 1.259221e-02	ci left: 4.068576e-02	ci right 4.120176e-02	k: 92941	n:2270000
SYTL1   2270000 perm   2751 sec   (825 perm/sec)   p_kst 4.094317e-02   p_cons 8.396476e-04   p_joint 3.035242e-04

Joint ci ratio: 1.408775e-01	ci left: 3.155565e-04	ci right 3.637976e-04	k: 773	n:2280000
Cons ci ratio: 8.942366e-02	ci left: 8.044412e-04	ci right 8.801692e-04	k: 1919	n:2280000
KS ci ratio: 1.256369e-02	ci left: 4.069182e-02	ci right 4.120672e-02	k: 93363	n:2280000
SYTL1   2280000 perm   2773 sec   (822 perm/sec)   p_kst 4.094868e-02   p_cons 8.416667e-04   p_joint 3.390351e-04

Joint ci ratio: 1.405149e-01	ci left: 3.158638e-04	ci right 3.640171e-04	k: 777	n:2290000
Cons ci ratio: 8.919166e-02	ci left: 8.051976e-04	ci right 8.807900e-04	k: 1929	n:2290000
KS ci ratio: 1.253542e-02	ci left: 4.069739e-02	ci right 4.121119e-02	k: 93784	n:2290000
SYTL1   2290000 perm   2795 sec   (819 perm/sec)   p_kst 4.095371e-02   p_cons 8.423581e-04   p_joint 3.393013e-04

Joint ci ratio: 1.403347e-01	ci left: 3.153295e-04	ci right 3.633345e-04	k: 779	n:2300000
Cons ci ratio: 8.900738e-02	ci left: 8.050975e-04	ci right 8.805162e-04	k: 1937	n:2300000
KS ci ratio: 1.250673e-02	ci left: 4.070682e-02	ci right 4.121956e-02	k: 94214	n:2300000
SYTL1   2300000 perm   2817 sec   (816 perm/sec)   p_kst 4.096261e-02   p_cons 8.421739e-04   p_joint 3.386957e-04

Joint ci ratio: 1.398870e-01	ci left: 3.160531e-04	ci right 3.640020e-04	k: 784	n:2310000
Cons ci ratio: 8.880142e-02	ci left: 8.054217e-04	ci right 8.806872e-04	k: 1946	n:2310000
KS ci ratio: 1.248070e-02	ci left: 4.070063e-02	ci right 4.121221e-02	k: 94608	n:2310000
SYTL1   2310000 perm   2840 sec   (813 perm/sec)   p_kst 4.095584e-02   p_cons 8.424242e-04   p_joint 3.393939e-04

Joint ci ratio: 1.396205e-01	ci left: 3.159387e-04	ci right 3.637713e-04	k: 787	n:2320000
Cons ci ratio: 8.857422e-02	ci left: 8.061648e-04	ci right 8.812970e-04	k: 1956	n:2320000
KS ci ratio: 1.245313e-02	ci left: 4.070524e-02	ci right 4.121574e-02	k: 95027	n:2320000
SYTL1   2320000 perm   2862 sec   (811 perm/sec)   p_kst 4.095991e-02   p_cons 8.431034e-04   p_joint 3.392241e-04

Joint ci ratio: 1.391796e-01	ci left: 3.166538e-04	ci right 3.644307e-04	k: 792	n:2330000
Cons ci ratio: 8.832628e-02	ci left: 8.073215e-04	ci right 8.823400e-04	k: 1967	n:2330000
KS ci ratio: 1.242662e-02	ci left: 4.070424e-02	ci right 4.121364e-02	k: 95433	n:2330000
SYTL1   2330000 perm   2885 sec   (808 perm/sec)   p_kst 4.095837e-02   p_cons 8.442060e-04   p_joint 3.399142e-04

Joint ci ratio: 1.391797e-01	ci left: 3.153006e-04	ci right 3.628734e-04	k: 792	n:2340000
Cons ci ratio: 8.823674e-02	ci left: 8.055431e-04	ci right 8.803165e-04	k: 1971	n:2340000
KS ci ratio: 1.239954e-02	ci left: 4.070794e-02	ci right 4.121627e-02	k: 95850	n:2340000
SYTL1   2340000 perm   2908 sec   (805 perm/sec)   p_kst 4.096154e-02   p_cons 8.423077e-04   p_joint 3.384615e-04

Joint ci ratio: 1.390045e-01	ci left: 3.147803e-04	ci right 3.622099e-04	k: 794	n:2350000
Cons ci ratio: 8.808057e-02	ci left: 8.050283e-04	ci right 8.796149e-04	k: 1978	n:2350000
KS ci ratio: 1.237632e-02	ci left: 4.068828e-02	ci right 4.119540e-02	k: 96212	n:2350000
SYTL1   2350000 perm   2931 sec   (802 perm/sec)   p_kst 4.094128e-02   p_cons 8.417021e-04   p_joint 3.378723e-04

Joint ci ratio: 1.388300e-01	ci left: 3.142645e-04	ci right 3.615520e-04	k: 796	n:2360000
Cons ci ratio: 8.799178e-02	ci left: 8.032747e-04	ci right 8.776199e-04	k: 1982	n:2360000
KS ci ratio: 1.235277e-02	ci left: 4.067174e-02	ci right 4.117769e-02	k: 96581	n:2360000
SYTL1   2360000 perm   2955 sec   (799 perm/sec)   p_kst 4.092415e-02   p_cons 8.398305e-04   p_joint 3.372881e-04

Joint ci ratio: 1.384830e-01	ci left: 3.145677e-04	ci right 3.617727e-04	k: 800	n:2370000
Cons ci ratio: 8.779276e-02	ci left: 8.035994e-04	ci right 8.777978e-04	k: 1991	n:2370000
KS ci ratio: 1.232815e-02	ci left: 4.066292e-02	ci right 4.116774e-02	k: 96968	n:2370000
SYTL1   2370000 perm   2977 sec   (796 perm/sec)   p_kst 4.091477e-02   p_cons 8.400844e-04   p_joint 3.375527e-04

Joint ci ratio: 1.382244e-01	ci left: 3.144628e-04	ci right 3.615568e-04	k: 803	n:2380000
Cons ci ratio: 8.755132e-02	ci left: 8.047434e-04	ci right 8.788327e-04	k: 2002	n:2380000
KS ci ratio: 1.230290e-02	ci left: 4.065920e-02	ci right 4.116293e-02	k: 97367	n:2380000
SYTL1   2380000 perm   3000 sec   (793 perm/sec)   p_kst 4.091050e-02   p_cons 8.411765e-04   p_joint 3.373950e-04

Joint ci ratio: 1.381385e-01	ci left: 3.135510e-04	ci right 3.604769e-04	k: 804	n:2390000
Cons ci ratio: 8.742052e-02	ci left: 8.038318e-04	ci right 8.777210e-04	k: 2008	n:2390000
KS ci ratio: 1.227746e-02	ci left: 4.065759e-02	ci right 4.116026e-02	k: 97771	n:2390000
SYTL1   2390000 perm   3024 sec   (790 perm/sec)   p_kst 4.090837e-02   p_cons 8.401674e-04   p_joint 3.364017e-04

Joint ci ratio: 1.379673e-01	ci left: 3.130491e-04	ci right 3.598370e-04	k: 806	n:2400000
Cons ci ratio: 8.733370e-02	ci left: 8.021128e-04	ci right 8.757669e-04	k: 2012	n:2400000
KS ci ratio: 1.225434e-02	ci left: 4.064229e-02	ci right 4.114381e-02	k: 98142	n:2400000
SYTL1   2400000 perm   3047 sec   (788 perm/sec)   p_kst 4.089250e-02   p_cons 8.383333e-04   p_joint 3.358333e-04

Joint ci ratio: 1.379674e-01	ci left: 3.117501e-04	ci right 3.583439e-04	k: 806	n:2410000
Cons ci ratio: 8.713911e-02	ci left: 8.024375e-04	ci right 8.759489e-04	k: 2021	n:2410000
KS ci ratio: 1.223057e-02	ci left: 4.063209e-02	ci right 4.113250e-02	k: 98525	n:2410000
SYTL1   2410000 perm   3071 sec   (785 perm/sec)   p_kst 4.088174e-02   p_cons 8.385892e-04   p_joint 3.344398e-04

Joint ci ratio: 1.378821e-01	ci left: 3.108609e-04	ci right 3.572906e-04	k: 807	n:2420000
Cons ci ratio: 8.709617e-02	ci left: 7.999300e-04	ci right 8.731738e-04	k: 2023	n:2420000
KS ci ratio: 1.220449e-02	ci left: 4.063762e-02	ci right 4.113703e-02	k: 98946	n:2420000
SYTL1   2420000 perm   3094 sec   (782 perm/sec)   p_kst 4.088678e-02   p_cons 8.359504e-04   p_joint 3.334711e-04

Joint ci ratio: 1.373729e-01	ci left: 3.119657e-04	ci right 3.583744e-04	k: 813	n:2430000
Cons ci ratio: 8.679640e-02	ci left: 8.022742e-04	ci right 8.754670e-04	k: 2037	n:2430000
KS ci ratio: 1.217998e-02	ci left: 4.063409e-02	ci right 4.113244e-02	k: 99345	n:2430000
SYTL1   2430000 perm   3120 sec   (779 perm/sec)   p_kst 4.088272e-02   p_cons 8.382716e-04   p_joint 3.345679e-04

Joint ci ratio: 1.371204e-01	ci left: 3.118745e-04	ci right 3.581774e-04	k: 816	n:2440000
Cons ci ratio: 8.660537e-02	ci left: 8.025948e-04	ci right 8.756475e-04	k: 2046	n:2440000
KS ci ratio: 1.215460e-02	ci left: 4.063712e-02	ci right 4.113446e-02	k: 99760	n:2440000
SYTL1   2440000 perm   3144 sec   (776 perm/sec)   p_kst 4.088525e-02   p_cons 8.385246e-04   p_joint 3.344262e-04

Joint ci ratio: 1.371205e-01	ci left: 3.106015e-04	ci right 3.567154e-04	k: 816	n:2450000
Cons ci ratio: 8.654207e-02	ci left: 8.005168e-04	ci right 8.733244e-04	k: 2049	n:2450000
KS ci ratio: 1.213021e-02	ci left: 4.063483e-02	ci right 4.113115e-02	k: 100162	n:2450000
SYTL1   2450000 perm   3168 sec   (773 perm/sec)   p_kst 4.088245e-02   p_cons 8.363265e-04   p_joint 3.330612e-04

Joint ci ratio: 1.370368e-01	ci left: 3.097315e-04	ci right 3.556858e-04	k: 817	n:2460000
Cons ci ratio: 8.635271e-02	ci left: 8.008421e-04	ci right 8.735119e-04	k: 2058	n:2460000
KS ci ratio: 1.210545e-02	ci left: 4.063581e-02	ci right 4.113112e-02	k: 100572	n:2460000
SYTL1   2460000 perm   3192 sec   (771 perm/sec)   p_kst 4.088293e-02   p_cons 8.365854e-04   p_joint 3.321138e-04

Joint ci ratio: 1.370369e-01	ci left: 3.084775e-04	ci right 3.542458e-04	k: 817	n:2470000
Cons ci ratio: 8.620632e-02	ci left: 8.003727e-04	ci right 8.728706e-04	k: 2065	n:2470000
KS ci ratio: 1.207954e-02	ci left: 4.064526e-02	ci right 4.113962e-02	k: 101003	n:2470000
SYTL1   2470000 perm   3216 sec   (768 perm/sec)   p_kst 4.089190e-02   p_cons 8.360324e-04   p_joint 3.307692e-04

Joint ci ratio: 1.368697e-01	ci left: 3.080124e-04	ci right 3.536515e-04	k: 819	n:2480000
Cons ci ratio: 8.608146e-02	ci left: 7.995126e-04	ci right 8.718224e-04	k: 2071	n:2480000
KS ci ratio: 1.205683e-02	ci left: 4.063494e-02	ci right 4.112823e-02	k: 101385	n:2480000
SYTL1   2480000 perm   3240 sec   (765 perm/sec)   p_kst 4.088105e-02   p_cons 8.350806e-04   p_joint 3.302419e-04

Joint ci ratio: 1.367031e-01	ci left: 3.075512e-04	ci right 3.530619e-04	k: 821	n:2490000
Cons ci ratio: 8.593644e-02	ci left: 7.990525e-04	ci right 8.711928e-04	k: 2078	n:2490000
KS ci ratio: 1.203246e-02	ci left: 4.063631e-02	ci right 4.112861e-02	k: 101796	n:2490000
SYTL1   2490000 perm   3264 sec   (763 perm/sec)   p_kst 4.088193e-02   p_cons 8.345382e-04   p_joint 3.297189e-04

Joint ci ratio: 1.365371e-01	ci left: 3.070936e-04	ci right 3.524769e-04	k: 823	n:2500000
Cons ci ratio: 8.573048e-02	ci left: 7.997704e-04	ci right 8.717939e-04	k: 2088	n:2500000
KS ci ratio: 1.200897e-02	ci left: 4.063288e-02	ci right 4.112418e-02	k: 102195	n:2500000
SYTL1   2500000 perm   3288 sec   (760 perm/sec)   p_kst 4.087800e-02   p_cons 8.352000e-04   p_joint 3.292000e-04

Joint ci ratio: 1.362069e-01	ci left: 3.074094e-04	ci right 3.527206e-04	k: 827	n:2510000
Cons ci ratio: 8.558722e-02	ci left: 7.993132e-04	ci right 8.711692e-04	k: 2095	n:2510000
KS ci ratio: 1.198495e-02	ci left: 4.063386e-02	ci right 4.112418e-02	k: 102605	n:2510000
SYTL1   2510000 perm   3313 sec   (758 perm/sec)   p_kst 4.087849e-02   p_cons 8.346614e-04   p_joint 3.294821e-04

Joint ci ratio: 1.360427e-01	ci left: 3.069561e-04	ci right 3.521416e-04	k: 829	n:2520000
Cons ci ratio: 8.546502e-02	ci left: 7.984713e-04	ci right 8.701441e-04	k: 2101	n:2520000
KS ci ratio: 1.196289e-02	ci left: 4.062295e-02	ci right 4.111223e-02	k: 102985	n:2520000
SYTL1   2520000 perm   3337 sec   (755 perm/sec)   p_kst 4.086706e-02   p_cons 8.337302e-04   p_joint 3.289683e-04

Joint ci ratio: 1.435002e-01	ci left: 2.737011e-04	ci right 3.163891e-04	k: 745	n:2530000
Cons ci ratio: 8.532310e-02	ci left: 7.980230e-04	ci right 8.695306e-04	k: 2108	n:2530000
KS ci ratio: 1.194107e-02	ci left: 4.061135e-02	ci right 4.109959e-02	k: 103363	n:2530000
SYTL1   2530000 perm   3362 sec   (753 perm/sec)   p_kst 4.085494e-02   p_cons 8.332016e-04   p_joint 2.944664e-04

Joint ci ratio: 1.357162e-01	ci left: 3.060604e-04	ci right 3.509971e-04	k: 833	n:2540000
Cons ci ratio: 8.520202e-02	ci left: 7.971930e-04	ci right 8.685199e-04	k: 2114	n:2540000
KS ci ratio: 1.191913e-02	ci left: 4.060140e-02	ci right 4.108862e-02	k: 103745	n:2540000
SYTL1   2540000 perm   3386 sec   (750 perm/sec)   p_kst 4.084449e-02   p_cons 8.322835e-04   p_joint 3.279528e-04

Joint ci ratio: 1.430217e-01	ci left: 2.734449e-04	ci right 3.159387e-04	k: 750	n:2550000
Cons ci ratio: 8.500128e-02	ci left: 7.979049e-04	ci right 8.691189e-04	k: 2124	n:2550000
KS ci ratio: 1.189505e-02	ci left: 4.060640e-02	ci right 4.109269e-02	k: 104165	n:2550000
SYTL1   2550000 perm   3413 sec   (747 perm/sec)   p_kst 4.084902e-02   p_cons 8.329412e-04   p_joint 2.941176e-04

Joint ci ratio: 1.428317e-01	ci left: 2.731301e-04	ci right 3.155137e-04	k: 752	n:2560000
Cons ci ratio: 8.478209e-02	ci left: 7.989938e-04	ci right 8.701119e-04	k: 2135	n:2560000
KS ci ratio: 1.187200e-02	ci left: 4.060551e-02	ci right 4.109084e-02	k: 104570	n:2560000
SYTL1   2560000 perm   3438 sec   (745 perm/sec)   p_kst 4.084766e-02   p_cons 8.339844e-04   p_joint 2.937500e-04

Joint ci ratio: 1.349898e-01	ci left: 3.058711e-04	ci right 3.505204e-04	k: 842	n:2570000
Cons ci ratio: 8.454487e-02	ci left: 8.004553e-04	ci right 8.714944e-04	k: 2147	n:2570000
KS ci ratio: 1.184850e-02	ci left: 4.060851e-02	ci right 4.109291e-02	k: 104985	n:2570000
SYTL1   2570000 perm   3463 sec   (742 perm/sec)   p_kst 4.085019e-02   p_cons 8.354086e-04   p_joint 3.276265e-04

Joint ci ratio: 1.348300e-01	ci left: 3.054346e-04	ci right 3.499631e-04	k: 844	n:2580000
Cons ci ratio: 8.429011e-02	ci left: 8.022852e-04	ci right 8.732615e-04	k: 2160	n:2580000
KS ci ratio: 1.182520e-02	ci left: 4.061111e-02	ci right 4.109458e-02	k: 105399	n:2580000
SYTL1   2580000 perm   3488 sec   (740 perm/sec)   p_kst 4.085233e-02   p_cons 8.372093e-04   p_joint 3.271318e-04

Joint ci ratio: 1.347503e-01	ci left: 3.046283e-04	ci right 3.490110e-04	k: 845	n:2590000
Cons ci ratio: 8.417338e-02	ci left: 8.014553e-04	ci right 8.722553e-04	k: 2166	n:2590000
KS ci ratio: 1.180098e-02	ci left: 4.062061e-02	ci right 4.110320e-02	k: 105831	n:2590000
SYTL1   2590000 perm   3513 sec   (737 perm/sec)   p_kst 4.086139e-02   p_cons 8.362934e-04   p_joint 3.262548e-04

Joint ci ratio: 1.345121e-01	ci left: 3.045717e-04	ci right 3.488614e-04	k: 848	n:2600000
Cons ci ratio: 8.401844e-02	ci left: 8.013850e-04	ci right 8.720421e-04	k: 2174	n:2600000
KS ci ratio: 1.177922e-02	ci left: 4.061470e-02	ci right 4.109632e-02	k: 106223	n:2600000
SYTL1   2600000 perm   3538 sec   (735 perm/sec)   p_kst 4.085500e-02   p_cons 8.361538e-04   p_joint 3.261538e-04

Joint ci ratio: 1.341963e-01	ci left: 3.048858e-04	ci right 3.491088e-04	k: 852	n:2610000
Cons ci ratio: 8.390283e-02	ci left: 8.005651e-04	ci right 8.710480e-04	k: 2180	n:2610000
KS ci ratio: 1.175885e-02	ci left: 4.060043e-02	ci right 4.108105e-02	k: 106593	n:2610000
SYTL1   2610000 perm   3563 sec   (733 perm/sec)   p_kst 4.084023e-02   p_cons 8.352490e-04   p_joint 3.264368e-04

Joint ci ratio: 1.339609e-01	ci left: 3.048287e-04	ci right 3.489597e-04	k: 855	n:2620000
Cons ci ratio: 8.374938e-02	ci left: 8.004990e-04	ci right 8.708408e-04	k: 2188	n:2620000
KS ci ratio: 1.173744e-02	ci left: 4.059389e-02	ci right 4.107354e-02	k: 106983	n:2620000
SYTL1   2620000 perm   3588 sec   (730 perm/sec)   p_kst 4.083321e-02   p_cons 8.351145e-04   p_joint 3.263359e-04

Joint ci ratio: 1.335713e-01	ci left: 3.055072e-04	ci right 3.495976e-04	k: 860	n:2630000
Cons ci ratio: 8.352071e-02	ci left: 8.019226e-04	ci right 8.721878e-04	k: 2200	n:2630000
KS ci ratio: 1.171445e-02	ci left: 4.059877e-02	ci right 4.107753e-02	k: 107403	n:2630000
SYTL1   2630000 perm   3615 sec   (728 perm/sec)   p_kst 4.083764e-02   p_cons 8.365019e-04   p_joint 3.269962e-04

Joint ci ratio: 1.333393e-01	ci left: 3.054484e-04	ci right 3.494476e-04	k: 863	n:2640000
Cons ci ratio: 8.336934e-02	ci left: 8.018521e-04	ci right 8.719776e-04	k: 2208	n:2640000
KS ci ratio: 1.169373e-02	ci left: 4.058926e-02	ci right 4.106706e-02	k: 107785	n:2640000
SYTL1   2640000 perm   3640 sec   (725 perm/sec)   p_kst 4.082765e-02   p_cons 8.363636e-04   p_joint 3.268939e-04

Joint ci ratio: 1.329551e-01	ci left: 3.061197e-04	ci right 3.500786e-04	k: 868	n:2650000
Cons ci ratio: 8.318125e-02	ci left: 8.025212e-04	ci right 8.725392e-04	k: 2218	n:2650000
KS ci ratio: 1.166981e-02	ci left: 4.060202e-02	ci right 4.107899e-02	k: 108226	n:2650000
SYTL1   2650000 perm   3666 sec   (723 perm/sec)   p_kst 4.084000e-02   p_cons 8.369811e-04   p_joint 3.275472e-04

Joint ci ratio: 1.325742e-01	ci left: 3.067862e-04	ci right 3.507046e-04	k: 873	n:2660000
Cons ci ratio: 8.293858e-02	ci left: 8.042900e-04	ci right 8.742477e-04	k: 2231	n:2660000
KS ci ratio: 1.164664e-02	ci left: 4.061056e-02	ci right 4.108668e-02	k: 108656	n:2660000
SYTL1   2660000 perm   3692 sec   (720 perm/sec)   p_kst 4.084812e-02   p_cons 8.387218e-04   p_joint 3.281955e-04

Joint ci ratio: 1.322718e-01	ci left: 3.070857e-04	ci right 3.509388e-04	k: 877	n:2670000
Cons ci ratio: 8.284589e-02	ci left: 8.031115e-04	ci right 8.728848e-04	k: 2236	n:2670000
KS ci ratio: 1.162478e-02	ci left: 4.061120e-02	ci right 4.108642e-02	k: 109065	n:2670000
SYTL1   2670000 perm   3718 sec   (718 perm/sec)   p_kst 4.084831e-02   p_cons 8.374532e-04   p_joint 3.284644e-04

Joint ci ratio: 1.318967e-01	ci left: 3.077439e-04	ci right 3.515566e-04	k: 882	n:2680000
Cons ci ratio: 8.269816e-02	ci left: 8.030381e-04	ci right 8.726746e-04	k: 2244	n:2680000
KS ci ratio: 1.160233e-02	ci left: 4.061667e-02	ci right 4.109104e-02	k: 109487	n:2680000
SYTL1   2680000 perm   3743 sec   (716 perm/sec)   p_kst 4.085336e-02   p_cons 8.373134e-04   p_joint 3.291045e-04

Joint ci ratio: 1.313769e-01	ci left: 3.091164e-04	ci right 3.529375e-04	k: 889	n:2690000
Cons ci ratio: 8.247796e-02	ci left: 8.044217e-04	ci right 8.739835e-04	k: 2256	n:2690000
KS ci ratio: 1.158028e-02	ci left: 4.062025e-02	ci right 4.109375e-02	k: 109904	n:2690000
SYTL1   2690000 perm   3769 sec   (714 perm/sec)   p_kst 4.085651e-02   p_cons 8.386617e-04   p_joint 3.304833e-04

Joint ci ratio: 1.310827e-01	ci left: 3.094044e-04	ci right 3.531605e-04	k: 893	n:2700000
Cons ci ratio: 8.233219e-02	ci left: 8.043442e-04	ci right 8.737706e-04	k: 2264	n:2700000
KS ci ratio: 1.155726e-02	ci left: 4.063119e-02	ci right 4.110387e-02	k: 110341	n:2700000
SYTL1   2700000 perm   3795 sec   (711 perm/sec)   p_kst 4.086704e-02   p_cons 8.385185e-04   p_joint 3.307407e-04

Joint ci ratio: 1.310095e-01	ci left: 3.086195e-04	ci right 3.522384e-04	k: 894	n:2710000
Cons ci ratio: 8.222339e-02	ci left: 8.035446e-04	ci right 8.728059e-04	k: 2270	n:2710000
KS ci ratio: 1.153514e-02	ci left: 4.063690e-02	ci right 4.110873e-02	k: 110764	n:2710000
SYTL1   2710000 perm   3821 sec   (709 perm/sec)   p_kst 4.087232e-02   p_cons 8.376384e-04   p_joint 3.298893e-04

Joint ci ratio: 1.309364e-01	ci left: 3.078405e-04	ci right 3.513231e-04	k: 895	n:2720000
Cons ci ratio: 8.211502e-02	ci left: 8.027510e-04	ci right 8.718483e-04	k: 2276	n:2720000
KS ci ratio: 1.151368e-02	ci left: 4.063890e-02	ci right 4.110987e-02	k: 111177	n:2720000
SYTL1   2720000 perm   3848 sec   (707 perm/sec)   p_kst 4.087390e-02   p_cons 8.367647e-04   p_joint 3.290441e-04

Joint ci ratio: 1.308635e-01	ci left: 3.070672e-04	ci right 3.504145e-04	k: 896	n:2730000
Cons ci ratio: 8.204306e-02	ci left: 8.012456e-04	ci right 8.701500e-04	k: 2280	n:2730000
KS ci ratio: 1.149353e-02	ci left: 4.063285e-02	ci right 4.110292e-02	k: 111568	n:2730000
SYTL1   2730000 perm   3873 sec   (705 perm/sec)   p_kst 4.086740e-02   p_cons 8.351648e-04   p_joint 3.282051e-04

Joint ci ratio: 1.304279e-01	ci left: 3.080647e-04	ci right 3.513969e-04	k: 902	n:2740000
Cons ci ratio: 8.184591e-02	ci left: 8.022537e-04	ci right 8.710711e-04	k: 2291	n:2740000
KS ci ratio: 1.147268e-02	ci left: 4.063231e-02	ci right 4.110151e-02	k: 111974	n:2740000
SYTL1   2740000 perm   3899 sec   (703 perm/sec)   p_kst 4.086642e-02   p_cons 8.361314e-04   p_joint 3.291971e-04

Joint ci ratio: 1.301400e-01	ci left: 3.083516e-04	ci right 3.516210e-04	k: 906	n:2750000
Cons ci ratio: 8.168568e-02	ci left: 8.025422e-04	ci right 8.712432e-04	k: 2300	n:2750000
KS ci ratio: 1.145279e-02	ci left: 4.062596e-02	ci right 4.109428e-02	k: 112364	n:2750000
SYTL1   2750000 perm   3926 sec   (701 perm/sec)   p_kst 4.085964e-02   p_cons 8.363636e-04   p_joint 3.294545e-04

Joint ci ratio: 1.299968e-01	ci left: 3.079355e-04	ci right 3.510952e-04	k: 908	n:2760000
Cons ci ratio: 8.154405e-02	ci left: 8.024738e-04	ci right 8.710442e-04	k: 2308	n:2760000
KS ci ratio: 1.143380e-02	ci left: 4.061425e-02	ci right 4.108164e-02	k: 112739	n:2760000
SYTL1   2760000 perm   3952 sec   (698 perm/sec)   p_kst 4.084746e-02   p_cons 8.362319e-04   p_joint 3.289855e-04

Joint ci ratio: 1.296407e-01	ci left: 3.085702e-04	ci right 3.516914e-04	k: 913	n:2770000
Cons ci ratio: 8.142075e-02	ci left: 8.020524e-04	ci right 8.704782e-04	k: 2315	n:2770000
KS ci ratio: 1.141180e-02	ci left: 4.062386e-02	ci right 4.109046e-02	k: 113173	n:2770000
SYTL1   2770000 perm   3979 sec   (696 perm/sec)   p_kst 4.085668e-02   p_cons 8.357401e-04   p_joint 3.296029e-04

Joint ci ratio: 1.294991e-01	ci left: 3.081564e-04	ci right 3.511690e-04	k: 915	n:2780000
Cons ci ratio: 8.133305e-02	ci left: 8.009293e-04	ci right 8.691821e-04	k: 2320	n:2780000
KS ci ratio: 1.139150e-02	ci left: 4.062264e-02	ci right 4.108839e-02	k: 113577	n:2780000
SYTL1   2780000 perm   4005 sec   (694 perm/sec)   p_kst 4.085504e-02   p_cons 8.345324e-04   p_joint 3.291367e-04

Joint ci ratio: 1.292172e-01	ci left: 3.084392e-04	ci right 3.513904e-04	k: 919	n:2790000
Cons ci ratio: 8.115838e-02	ci left: 8.015700e-04	ci right 8.697238e-04	k: 2330	n:2790000
KS ci ratio: 1.137411e-02	ci left: 4.060213e-02	ci right 4.106693e-02	k: 113927	n:2790000
SYTL1   2790000 perm   4032 sec   (692 perm/sec)   p_kst 4.083405e-02   p_cons 8.351254e-04   p_joint 3.293907e-04

Joint ci ratio: 1.288675e-01	ci left: 3.090657e-04	ci right 3.519788e-04	k: 924	n:2800000
Cons ci ratio: 8.095023e-02	ci left: 8.029061e-04	ci right 8.709902e-04	k: 2342	n:2800000
KS ci ratio: 1.135380e-02	ci left: 4.060242e-02	ci right 4.106639e-02	k: 114335	n:2800000
SYTL1   2800000 perm   4059 sec   (690 perm/sec)   p_kst 4.083393e-02   p_cons 8.364286e-04   p_joint 3.300000e-04

Joint ci ratio: 1.286590e-01	ci left: 3.089990e-04	ci right 3.518282e-04	k: 927	n:2810000
Cons ci ratio: 8.082959e-02	ci left: 8.024895e-04	ci right 8.704321e-04	k: 2349	n:2810000
KS ci ratio: 1.133473e-02	ci left: 4.059490e-02	ci right 4.105800e-02	k: 114721	n:2810000
SYTL1   2810000 perm   4085 sec   (688 perm/sec)   p_kst 4.082598e-02   p_cons 8.359431e-04   p_joint 3.298932e-04

Joint ci ratio: 1.286591e-01	ci left: 3.079033e-04	ci right 3.505806e-04	k: 927	n:2820000
Cons ci ratio: 8.070949e-02	ci left: 8.020759e-04	ci right 8.698778e-04	k: 2356	n:2820000
KS ci ratio: 1.131648e-02	ci left: 4.058249e-02	ci right 4.104470e-02	k: 115093	n:2820000
SYTL1   2820000 perm   4112 sec   (686 perm/sec)   p_kst 4.081312e-02   p_cons 8.354610e-04   p_joint 3.287234e-04

Joint ci ratio: 1.283827e-01	ci left: 3.081833e-04	ci right 3.508006e-04	k: 931	n:2830000
Cons ci ratio: 8.057288e-02	ci left: 8.020116e-04	ci right 8.696879e-04	k: 2364	n:2830000
KS ci ratio: 1.129606e-02	ci left: 4.058567e-02	ci right 4.104707e-02	k: 115509	n:2830000
SYTL1   2830000 perm   4139 sec   (684 perm/sec)   p_kst 4.081590e-02   p_cons 8.353357e-04   p_joint 3.289753e-04

Joint ci ratio: 1.281766e-01	ci left: 3.081206e-04	ci right 3.506556e-04	k: 934	n:2840000
Cons ci ratio: 8.045392e-02	ci left: 8.016027e-04	ci right 8.691400e-04	k: 2371	n:2840000
KS ci ratio: 1.127637e-02	ci left: 4.058461e-02	ci right 4.104520e-02	k: 115913	n:2840000
SYTL1   2840000 perm   4166 sec   (682 perm/sec)   p_kst 4.081444e-02   p_cons 8.348592e-04   p_joint 3.288732e-04

Joint ci ratio: 1.278352e-01	ci left: 3.087376e-04	ci right 3.512358e-04	k: 939	n:2850000
Cons ci ratio: 8.038623e-02	ci left: 8.001654e-04	ci right 8.675222e-04	k: 2375	n:2850000
KS ci ratio: 1.125703e-02	ci left: 4.058182e-02	ci right 4.104157e-02	k: 116312	n:2850000
SYTL1   2850000 perm   4194 sec   (680 perm/sec)   p_kst 4.081123e-02   p_cons 8.333333e-04   p_joint 3.294737e-04

Joint ci ratio: 1.275641e-01	ci left: 3.090121e-04	ci right 3.514509e-04	k: 943	n:2860000
Cons ci ratio: 8.025125e-02	ci left: 8.001086e-04	ci right 8.673423e-04	k: 2383	n:2860000
KS ci ratio: 1.123854e-02	ci left: 4.057381e-02	ci right 4.103272e-02	k: 116696	n:2860000
SYTL1   2860000 perm   4222 sec   (677 perm/sec)   p_kst 4.080280e-02   p_cons 8.332168e-04   p_joint 3.297203e-04

Joint ci ratio: 1.272946e-01	ci left: 3.092847e-04	ci right 3.516645e-04	k: 947	n:2870000
Cons ci ratio: 8.011694e-02	ci left: 8.000523e-04	ci right 8.671635e-04	k: 2391	n:2870000
KS ci ratio: 1.121905e-02	ci left: 4.057350e-02	ci right 4.103161e-02	k: 117102	n:2870000
SYTL1   2870000 perm   4249 sec   (675 perm/sec)   p_kst 4.080209e-02   p_cons 8.331010e-04   p_joint 3.299652e-04

Joint ci ratio: 1.271606e-01	ci left: 3.088831e-04	ci right 3.511600e-04	k: 949	n:2880000
Cons ci ratio: 7.998330e-02	ci left: 7.999965e-04	ci right 8.669859e-04	k: 2399	n:2880000
KS ci ratio: 1.119946e-02	ci left: 4.057458e-02	ci right 4.103189e-02	k: 117512	n:2880000
SYTL1   2880000 perm   4277 sec   (673 perm/sec)   p_kst 4.080278e-02   p_cons 8.329861e-04   p_joint 3.295139e-04

Joint ci ratio: 1.271607e-01	ci left: 3.078143e-04	ci right 3.499449e-04	k: 949	n:2890000
Cons ci ratio: 7.990016e-02	ci left: 7.989239e-04	ci right 8.657506e-04	k: 2404	n:2890000
KS ci ratio: 1.117873e-02	ci left: 4.058429e-02	ci right 4.104085e-02	k: 117947	n:2890000
SYTL1   2890000 perm   4304 sec   (671 perm/sec)   p_kst 4.081211e-02   p_cons 8.318339e-04   p_joint 3.283737e-04

Joint ci ratio: 1.270271e-01	ci left: 3.074206e-04	ci right 3.494498e-04	k: 951	n:2900000
Cons ci ratio: 7.985045e-02	ci left: 7.971828e-04	ci right 8.638205e-04	k: 2407	n:2900000
KS ci ratio: 1.115984e-02	ci left: 4.058189e-02	ci right 4.103765e-02	k: 118347	n:2900000
SYTL1   2900000 perm   4331 sec   (670 perm/sec)   p_kst 4.080931e-02   p_cons 8.300000e-04   p_joint 3.279310e-04

Joint ci ratio: 1.269604e-01	ci left: 3.066969e-04	ci right 3.486035e-04	k: 952	n:2910000
Cons ci ratio: 7.975119e-02	ci left: 7.964640e-04	ci right 8.629550e-04	k: 2413	n:2910000
KS ci ratio: 1.114075e-02	ci left: 4.058156e-02	ci right 4.103654e-02	k: 118753	n:2910000
SYTL1   2910000 perm   4359 sec   (668 perm/sec)   p_kst 4.080859e-02   p_cons 8.292096e-04   p_joint 3.271478e-04

Joint ci ratio: 1.267611e-01	ci left: 3.066413e-04	ci right 3.484696e-04	k: 955	n:2920000
Cons ci ratio: 7.963583e-02	ci left: 7.960859e-04	ci right 8.624447e-04	k: 2420	n:2920000
KS ci ratio: 1.112122e-02	ci left: 4.058499e-02	ci right 4.103921e-02	k: 119170	n:2920000
SYTL1   2920000 perm   4387 sec   (666 perm/sec)   p_kst 4.081164e-02   p_cons 8.287671e-04   p_joint 3.270548e-04

Joint ci ratio: 1.264309e-01	ci left: 3.072472e-04	ci right 3.490408e-04	k: 960	n:2930000
Cons ci ratio: 7.953736e-02	ci left: 7.953759e-04	ci right 8.615898e-04	k: 2426	n:2930000
KS ci ratio: 1.110282e-02	ci left: 4.058126e-02	ci right 4.103467e-02	k: 119566	n:2930000
SYTL1   2930000 perm   4415 sec   (664 perm/sec)   p_kst 4.080751e-02   p_cons 8.279863e-04   p_joint 3.276451e-04

Joint ci ratio: 1.262340e-01	ci left: 3.071903e-04	ci right 3.489062e-04	k: 963	n:2940000
Cons ci ratio: 7.947195e-02	ci left: 7.940040e-04	ci right 8.600468e-04	k: 2430	n:2940000
KS ci ratio: 1.108387e-02	ci left: 4.058195e-02	ci right 4.103460e-02	k: 119975	n:2940000
SYTL1   2940000 perm   4443 sec   (662 perm/sec)   p_kst 4.080782e-02   p_cons 8.265306e-04   p_joint 3.275510e-04

Joint ci ratio: 1.259078e-01	ci left: 3.077905e-04	ci right 3.494718e-04	k: 968	n:2950000
Cons ci ratio: 7.929272e-02	ci left: 7.949673e-04	ci right 8.609342e-04	k: 2441	n:2950000
KS ci ratio: 1.106536e-02	ci left: 4.058028e-02	ci right 4.103215e-02	k: 120377	n:2950000
SYTL1   2950000 perm   4471 sec   (660 perm/sec)   p_kst 4.080576e-02   p_cons 8.274576e-04   p_joint 3.281356e-04

Joint ci ratio: 1.257781e-01	ci left: 3.074051e-04	ci right 3.489881e-04	k: 970	n:2960000
Cons ci ratio: 7.922792e-02	ci left: 7.936061e-04	ci right 8.594038e-04	k: 2445	n:2960000
KS ci ratio: 1.104637e-02	ci left: 4.058266e-02	ci right 4.103377e-02	k: 120791	n:2960000
SYTL1   2960000 perm   4499 sec   (658 perm/sec)   p_kst 4.080777e-02   p_cons 8.260135e-04   p_joint 3.277027e-04

Joint ci ratio: 1.254555e-01	ci left: 3.080006e-04	ci right 3.495494e-04	k: 975	n:2970000
Cons ci ratio: 7.903424e-02	ci left: 7.948945e-04	ci right 8.606305e-04	k: 2457	n:2970000
KS ci ratio: 1.102776e-02	ci left: 4.058302e-02	ci right 4.103337e-02	k: 121199	n:2970000
SYTL1   2970000 perm   4527 sec   (656 perm/sec)   p_kst 4.080774e-02   p_cons 8.272727e-04   p_joint 3.282828e-04

Joint ci ratio: 1.252631e-01	ci left: 3.079422e-04	ci right 3.494147e-04	k: 978	n:2980000
Cons ci ratio: 7.890594e-02	ci left: 7.948586e-04	ci right 8.604800e-04	k: 2465	n:2980000
KS ci ratio: 1.100906e-02	ci left: 4.058471e-02	ci right 4.103431e-02	k: 121611	n:2980000
SYTL1   2980000 perm   4556 sec   (654 perm/sec)   p_kst 4.080906e-02   p_cons 8.271812e-04   p_joint 3.281879e-04

Joint ci ratio: 1.250080e-01	ci left: 3.082082e-04	ci right 3.496257e-04	k: 982	n:2990000
Cons ci ratio: 7.881015e-02	ci left: 7.941673e-04	ci right 8.596484e-04	k: 2471	n:2990000
KS ci ratio: 1.099139e-02	ci left: 4.057972e-02	ci right 4.102853e-02	k: 122003	n:2990000
SYTL1   2990000 perm   4583 sec   (652 perm/sec)   p_kst 4.080368e-02   p_cons 8.264214e-04   p_joint 3.284281e-04

Joint ci ratio: 1.248177e-01	ci left: 3.081496e-04	ci right 3.494915e-04	k: 985	n:3000000
Cons ci ratio: 7.868294e-02	ci left: 7.941343e-04	ci right 8.595021e-04	k: 2479	n:3000000
KS ci ratio: 1.097325e-02	ci left: 4.057875e-02	ci right 4.102681e-02	k: 122407	n:3000000
SYTL1   3000000 perm   4612 sec   (651 perm/sec)   p_kst 4.080233e-02   p_cons 8.263333e-04   p_joint 3.283333e-04

Joint ci ratio: 1.246282e-01	ci left: 3.080914e-04	ci right 3.493582e-04	k: 988	n:3010000
Cons ci ratio: 7.852476e-02	ci left: 7.947529e-04	ci right 8.600341e-04	k: 2489	n:3010000
KS ci ratio: 1.095491e-02	ci left: 4.057977e-02	ci right 4.102709e-02	k: 122817	n:3010000
SYTL1   3010000 perm   4641 sec   (649 perm/sec)   p_kst 4.080299e-02   p_cons 8.269103e-04   p_joint 3.282392e-04

Joint ci ratio: 1.241894e-01	ci left: 3.093170e-04	ci right 3.505913e-04	k: 995	n:3020000
Cons ci ratio: 7.833618e-02	ci left: 7.960169e-04	ci right 8.612378e-04	k: 2501	n:3020000
KS ci ratio: 1.093565e-02	ci left: 4.058806e-02	ci right 4.103468e-02	k: 123249	n:3020000
SYTL1   3020000 perm   4669 sec   (647 perm/sec)   p_kst 4.081093e-02   p_cons 8.281457e-04   p_joint 3.294702e-04

Joint ci ratio: 1.240650e-01	ci left: 3.089358e-04	ci right 3.501148e-04	k: 997	n:3030000
Cons ci ratio: 7.816450e-02	ci left: 7.969491e-04	ci right 8.620968e-04	k: 2512	n:3030000
KS ci ratio: 1.091930e-02	ci left: 4.057621e-02	ci right 4.102203e-02	k: 123620	n:3030000
SYTL1   3030000 perm   4698 sec   (645 perm/sec)   p_kst 4.079868e-02   p_cons 8.290429e-04   p_joint 3.290429e-04

Joint ci ratio: 1.238789e-01	ci left: 3.088758e-04	ci right 3.499806e-04	k: 1000	n:3040000
Cons ci ratio: 7.805588e-02	ci left: 7.965852e-04	ci right 8.616085e-04	k: 2519	n:3040000
KS ci ratio: 1.090297e-02	ci left: 4.056477e-02	ci right 4.100979e-02	k: 123992	n:3040000
SYTL1   3040000 perm   4727 sec   (643 perm/sec)   p_kst 4.078684e-02   p_cons 8.286184e-04   p_joint 3.289474e-04

Joint ci ratio: 1.237554e-01	ci left: 3.084985e-04	ci right 3.495091e-04	k: 1002	n:3050000
Cons ci ratio: 7.802501e-02	ci left: 7.946164e-04	ci right 8.594521e-04	k: 2521	n:3050000
KS ci ratio: 1.088494e-02	ci left: 4.056616e-02	ci right 4.101045e-02	k: 124403	n:3050000
SYTL1   3050000 perm   4757 sec   (641 perm/sec)   p_kst 4.078787e-02   p_cons 8.265574e-04   p_joint 3.285246e-04

Joint ci ratio: 1.236322e-01	ci left: 3.081237e-04	ci right 3.490408e-04	k: 1004	n:3060000
Cons ci ratio: 7.793239e-02	ci left: 7.939421e-04	ci right 8.586425e-04	k: 2527	n:3060000
KS ci ratio: 1.086695e-02	ci left: 4.056786e-02	ci right 4.101144e-02	k: 124815	n:3060000
SYTL1   3060000 perm   4786 sec   (639 perm/sec)   p_kst 4.078922e-02   p_cons 8.258170e-04   p_joint 3.281046e-04

Joint ci ratio: 1.234481e-01	ci left: 3.080670e-04	ci right 3.489112e-04	k: 1007	n:3070000
Cons ci ratio: 7.777868e-02	ci left: 7.945499e-04	ci right 8.591663e-04	k: 2537	n:3070000
KS ci ratio: 1.085059e-02	ci left: 4.055851e-02	ci right 4.100131e-02	k: 125193	n:3070000
SYTL1   3070000 perm   4814 sec   (638 perm/sec)   p_kst 4.077948e-02   p_cons 8.263844e-04   p_joint 3.280130e-04

Joint ci ratio: 1.232648e-01	ci left: 3.080108e-04	ci right 3.487824e-04	k: 1010	n:3080000
Cons ci ratio: 7.767166e-02	ci left: 7.941988e-04	ci right 8.586937e-04	k: 2544	n:3080000
KS ci ratio: 1.083340e-02	ci left: 4.055570e-02	ci right 4.099776e-02	k: 125591	n:3080000
SYTL1   3080000 perm   4844 sec   (636 perm/sec)   p_kst 4.077630e-02   p_cons 8.259740e-04   p_joint 3.279221e-04

Joint ci ratio: 1.230217e-01	ci left: 3.082686e-04	ci right 3.489880e-04	k: 1014	n:3090000
Cons ci ratio: 7.750431e-02	ci left: 7.951194e-04	ci right 8.595437e-04	k: 2555	n:3090000
KS ci ratio: 1.081527e-02	ci left: 4.056033e-02	ci right 4.100170e-02	k: 126012	n:3090000
SYTL1   3090000 perm   4873 sec   (634 perm/sec)   p_kst 4.078058e-02   p_cons 8.268608e-04   p_joint 3.281553e-04

Joint ci ratio: 1.227197e-01	ci left: 3.088375e-04	ci right 3.495247e-04	k: 1019	n:3100000
Cons ci ratio: 7.726277e-02	ci left: 7.976159e-04	ci right 8.620321e-04	k: 2571	n:3100000
KS ci ratio: 1.079744e-02	ci left: 4.056332e-02	ci right 4.100399e-02	k: 126428	n:3100000
SYTL1   3100000 perm   4903 sec   (632 perm/sec)   p_kst 4.078323e-02   p_cons 8.293548e-04   p_joint 3.287097e-04

Joint ci ratio: 1.225397e-01	ci left: 3.087795e-04	ci right 3.493951e-04	k: 1022	n:3110000
Cons ci ratio: 7.711299e-02	ci left: 7.982046e-04	ci right 8.625377e-04	k: 2581	n:3110000
KS ci ratio: 1.078046e-02	ci left: 4.056084e-02	ci right 4.100079e-02	k: 126827	n:3110000
SYTL1   3110000 perm   4932 sec   (631 perm/sec)   p_kst 4.078039e-02   p_cons 8.299035e-04   p_joint 3.286174e-04

Joint ci ratio: 1.223604e-01	ci left: 3.087219e-04	ci right 3.492662e-04	k: 1025	n:3120000
Cons ci ratio: 7.699380e-02	ci left: 7.981610e-04	ci right 8.623867e-04	k: 2589	n:3120000
KS ci ratio: 1.076418e-02	ci left: 4.055390e-02	ci right 4.099310e-02	k: 127212	n:3120000
SYTL1   3120000 perm   4961 sec   (629 perm/sec)   p_kst 4.077308e-02   p_cons 8.298077e-04   p_joint 3.285256e-04

Joint ci ratio: 1.221819e-01	ci left: 3.086647e-04	ci right 3.491381e-04	k: 1028	n:3130000
Cons ci ratio: 7.687517e-02	ci left: 7.981177e-04	ci right 8.622365e-04	k: 2597	n:3130000
KS ci ratio: 1.074858e-02	ci left: 4.054255e-02	ci right 4.098099e-02	k: 127583	n:3130000
SYTL1   3130000 perm   4991 sec   (627 perm/sec)   p_kst 4.076134e-02   p_cons 8.297125e-04   p_joint 3.284345e-04

Joint ci ratio: 1.221226e-01	ci left: 3.079905e-04	ci right 3.483544e-04	k: 1029	n:3140000
Cons ci ratio: 7.681611e-02	ci left: 7.968253e-04	ci right 8.607889e-04	k: 2601	n:3140000
KS ci ratio: 1.073152e-02	ci left: 4.054238e-02	ci right 4.098012e-02	k: 127989	n:3140000
SYTL1   3140000 perm   5021 sec   (625 perm/sec)   p_kst 4.076083e-02   p_cons 8.283439e-04   p_joint 3.277070e-04

Joint ci ratio: 1.220043e-01	ci left: 3.076282e-04	ci right 3.479028e-04	k: 1031	n:3150000
Cons ci ratio: 7.672773e-02	ci left: 7.961639e-04	ci right 8.599976e-04	k: 2607	n:3150000
KS ci ratio: 1.071546e-02	ci left: 4.053557e-02	ci right 4.097258e-02	k: 128374	n:3150000
SYTL1   3150000 perm   5052 sec   (624 perm/sec)   p_kst 4.075365e-02   p_cons 8.276190e-04   p_joint 3.273016e-04

Joint ci ratio: 1.218273e-01	ci left: 3.075752e-04	ci right 3.477801e-04	k: 1034	n:3160000
Cons ci ratio: 7.661032e-02	ci left: 7.961275e-04	ci right 8.598563e-04	k: 2615	n:3160000
KS ci ratio: 1.069899e-02	ci left: 4.053227e-02	ci right 4.096857e-02	k: 128770	n:3160000
SYTL1   3160000 perm   5081 sec   (622 perm/sec)   p_kst 4.075000e-02   p_cons 8.275316e-04   p_joint 3.272152e-04

Joint ci ratio: 1.215926e-01	ci left: 3.078283e-04	ci right 3.479833e-04	k: 1038	n:3170000
Cons ci ratio: 7.647887e-02	ci left: 7.964008e-04	ci right 8.600372e-04	k: 2624	n:3170000
KS ci ratio: 1.068143e-02	ci left: 4.053749e-02	ci right 4.097312e-02	k: 129193	n:3170000
SYTL1   3170000 perm   5112 sec   (620 perm/sec)   p_kst 4.075489e-02   p_cons 8.277603e-04   p_joint 3.274448e-04

Joint ci ratio: 1.213010e-01	ci left: 3.083849e-04	ci right 3.485090e-04	k: 1043	n:3180000
Cons ci ratio: 7.626121e-02	ci left: 7.985233e-04	ci right 8.621397e-04	k: 2639	n:3180000
KS ci ratio: 1.066289e-02	ci left: 4.055052e-02	ci right 4.098553e-02	k: 129641	n:3180000
SYTL1   3180000 perm   5141 sec   (619 perm/sec)   p_kst 4.076761e-02   p_cons 8.298742e-04   p_joint 3.279874e-04

Joint ci ratio: 1.210693e-01	ci left: 3.086340e-04	ci right 3.487084e-04	k: 1047	n:3190000
Cons ci ratio: 7.614593e-02	ci left: 7.984802e-04	ci right 8.619927e-04	k: 2647	n:3190000
KS ci ratio: 1.064666e-02	ci left: 4.054721e-02	ci right 4.098152e-02	k: 130037	n:3190000
SYTL1   3190000 perm   5171 sec   (617 perm/sec)   p_kst 4.076395e-02   p_cons 8.297806e-04   p_joint 3.282132e-04

Joint ci ratio: 1.210116e-01	ci left: 3.079726e-04	ci right 3.479407e-04	k: 1048	n:3200000
Cons ci ratio: 7.604550e-02	ci left: 7.981308e-04	ci right 8.615281e-04	k: 2654	n:3200000
KS ci ratio: 1.062890e-02	ci left: 4.055577e-02	ci right 4.098944e-02	k: 130471	n:3200000
SYTL1   3200000 perm   5201 sec   (615 perm/sec)   p_kst 4.077219e-02   p_cons 8.293750e-04   p_joint 3.275000e-04

Joint ci ratio: 1.207815e-01	ci left: 3.082216e-04	ci right 3.481405e-04	k: 1052	n:3210000
Cons ci ratio: 7.594546e-02	ci left: 7.977836e-04	ci right 8.610663e-04	k: 2661	n:3210000
KS ci ratio: 1.061363e-02	ci left: 4.054656e-02	ci right 4.097950e-02	k: 130848	n:3210000
SYTL1   3210000 perm   5231 sec   (614 perm/sec)   p_kst 4.076262e-02   p_cons 8.289720e-04   p_joint 3.277259e-04

Joint ci ratio: 1.205528e-01	ci left: 3.084691e-04	ci right 3.483391e-04	k: 1056	n:3220000
Cons ci ratio: 7.584582e-02	ci left: 7.974387e-04	ci right 8.606074e-04	k: 2668	n:3220000
KS ci ratio: 1.059720e-02	ci left: 4.054639e-02	ci right 4.097866e-02	k: 131254	n:3220000
SYTL1   3220000 perm   5262 sec   (612 perm/sec)   p_kst 4.076211e-02   p_cons 8.285714e-04   p_joint 3.279503e-04

Joint ci ratio: 1.203253e-01	ci left: 3.087152e-04	ci right 3.485363e-04	k: 1060	n:3230000
Cons ci ratio: 7.573241e-02	ci left: 7.973997e-04	ci right 8.604667e-04	k: 2676	n:3230000
KS ci ratio: 1.058043e-02	ci left: 4.054931e-02	ci right 4.098092e-02	k: 131670	n:3230000
SYTL1   3230000 perm   5292 sec   (610 perm/sec)   p_kst 4.076471e-02   p_cons 8.284830e-04   p_joint 3.281734e-04

Joint ci ratio: 1.199865e-01	ci left: 3.095586e-04	ci right 3.493680e-04	k: 1066	n:3240000
Cons ci ratio: 7.559133e-02	ci left: 7.979666e-04	ci right 8.609557e-04	k: 2686	n:3240000
KS ci ratio: 1.056395e-02	ci left: 4.055068e-02	ci right 4.098163e-02	k: 132081	n:3240000
SYTL1   3240000 perm   5322 sec   (609 perm/sec)   p_kst 4.076574e-02   p_cons 8.290123e-04   p_joint 3.290123e-04

Joint ci ratio: 1.197622e-01	ci left: 3.098000e-04	ci right 3.495607e-04	k: 1070	n:3250000
Cons ci ratio: 7.552114e-02	ci left: 7.970207e-04	ci right 8.598741e-04	k: 2691	n:3250000
KS ci ratio: 1.054909e-02	ci left: 4.054068e-02	ci right 4.097091e-02	k: 132455	n:3250000
SYTL1   3250000 perm   5355 sec   (607 perm/sec)   p_kst 4.075538e-02   p_cons 8.280000e-04   p_joint 3.292308e-04

Joint ci ratio: 1.195391e-01	ci left: 3.100399e-04	ci right 3.497521e-04	k: 1074	n:3260000
Cons ci ratio: 7.540918e-02	ci left: 7.969836e-04	ci right 8.597368e-04	k: 2699	n:3260000
KS ci ratio: 1.053226e-02	ci left: 4.054573e-02	ci right 4.097533e-02	k: 132878	n:3260000
SYTL1   3260000 perm   5386 sec   (605 perm/sec)   p_kst 4.076012e-02   p_cons 8.279141e-04   p_joint 3.294479e-04

Joint ci ratio: 1.194281e-01	ci left: 3.096851e-04	ci right 3.493125e-04	k: 1076	n:3270000
Cons ci ratio: 7.532555e-02	ci left: 7.963466e-04	ci right 8.589771e-04	k: 2705	n:3270000
KS ci ratio: 1.051575e-02	ci left: 4.054893e-02	ci right 4.097788e-02	k: 133295	n:3270000
SYTL1   3270000 perm   5417 sec   (604 perm/sec)   p_kst 4.076300e-02   p_cons 8.272171e-04   p_joint 3.290520e-04

Joint ci ratio: 1.192621e-01	ci left: 3.096283e-04	ci right 3.491894e-04	k: 1079	n:3280000
Cons ci ratio: 7.521446e-02	ci left: 7.963118e-04	ci right 8.588432e-04	k: 2713	n:3280000
KS ci ratio: 1.049945e-02	ci left: 4.055119e-02	ci right 4.097950e-02	k: 133709	n:3280000
SYTL1   3280000 perm   5449 sec   (602 perm/sec)   p_kst 4.076494e-02   p_cons 8.271341e-04   p_joint 3.289634e-04

Joint ci ratio: 1.189870e-01	ci left: 3.101617e-04	ci right 3.496931e-04	k: 1084	n:3290000
Cons ci ratio: 7.510385e-02	ci left: 7.962773e-04	ci right 8.587100e-04	k: 2721	n:3290000
KS ci ratio: 1.048383e-02	ci left: 4.054889e-02	ci right 4.097654e-02	k: 134108	n:3290000
SYTL1   3290000 perm   5479 sec   (600 perm/sec)   p_kst 4.076231e-02   p_cons 8.270517e-04   p_joint 3.294833e-04

Joint ci ratio: 1.187683e-01	ci left: 3.103979e-04	ci right 3.498815e-04	k: 1088	n:3300000
Cons ci ratio: 7.496625e-02	ci left: 7.968378e-04	ci right 8.591950e-04	k: 2731	n:3300000
KS ci ratio: 1.046654e-02	ci left: 4.055961e-02	ci right 4.098665e-02	k: 134550	n:3300000
SYTL1   3300000 perm   5510 sec   (599 perm/sec)   p_kst 4.077273e-02   p_cons 8.275758e-04   p_joint 3.296970e-04

Joint ci ratio: 1.184965e-01	ci left: 3.109259e-04	ci right 3.503799e-04	k: 1093	n:3310000
Cons ci ratio: 7.487041e-02	ci left: 7.965056e-04	ci right 8.587536e-04	k: 2738	n:3310000
KS ci ratio: 1.045043e-02	ci left: 4.056212e-02	ci right 4.098853e-02	k: 134965	n:3310000
SYTL1   3310000 perm   5541 sec   (597 perm/sec)   p_kst 4.077492e-02   p_cons 8.271903e-04   p_joint 3.302115e-04

Joint ci ratio: 1.181728e-01	ci left: 3.117431e-04	ci right 3.511852e-04	k: 1099	n:3320000
Cons ci ratio: 7.478857e-02	ci left: 7.958799e-04	ci right 8.580081e-04	k: 2744	n:3320000
KS ci ratio: 1.043583e-02	ci left: 4.055380e-02	ci right 4.097953e-02	k: 135344	n:3320000
SYTL1   3320000 perm   5573 sec   (596 perm/sec)   p_kst 4.076627e-02   p_cons 8.265060e-04   p_joint 3.310241e-04

Joint ci ratio: 1.179052e-01	ci left: 3.122641e-04	ci right 3.516764e-04	k: 1104	n:3330000
Cons ci ratio: 7.465269e-02	ci left: 7.964368e-04	ci right 8.584906e-04	k: 2754	n:3330000
KS ci ratio: 1.042094e-02	ci left: 4.054823e-02	ci right 4.097329e-02	k: 135732	n:3330000
SYTL1   3330000 perm   5604 sec   (594 perm/sec)   p_kst 4.076036e-02   p_cons 8.270270e-04   p_joint 3.315315e-04

Joint ci ratio: 1.176923e-01	ci left: 3.124915e-04	ci right 3.518563e-04	k: 1108	n:3340000
Cons ci ratio: 7.453104e-02	ci left: 7.966966e-04	ci right 8.586651e-04	k: 2763	n:3340000
KS ci ratio: 1.040674e-02	ci left: 4.053792e-02	ci right 4.096228e-02	k: 136104	n:3340000
SYTL1   3340000 perm   5636 sec   (593 perm/sec)   p_kst 4.074970e-02   p_cons 8.272455e-04   p_joint 3.317365e-04

Joint ci ratio: 1.175864e-01	ci left: 3.121381e-04	ci right 3.514206e-04	k: 1110	n:3350000
Cons ci ratio: 7.439657e-02	ci left: 7.972479e-04	ci right 8.591426e-04	k: 2773	n:3350000
KS ci ratio: 1.039162e-02	ci left: 4.053511e-02	ci right 4.095882e-02	k: 136501	n:3350000
SYTL1   3350000 perm   5667 sec   (591 perm/sec)   p_kst 4.074657e-02   p_cons 8.277612e-04   p_joint 3.313433e-04

Joint ci ratio: 1.174279e-01	ci left: 3.120757e-04	ci right 3.512938e-04	k: 1113	n:3360000
Cons ci ratio: 7.428952e-02	ci left: 7.972118e-04	ci right 8.590108e-04	k: 2781	n:3360000
KS ci ratio: 1.037501e-02	ci left: 4.054389e-02	ci right 4.096702e-02	k: 136937	n:3360000
SYTL1   3360000 perm   5699 sec   (590 perm/sec)   p_kst 4.075506e-02   p_cons 8.276786e-04   p_joint 3.312500e-04

Joint ci ratio: 1.173227e-01	ci left: 3.117257e-04	ci right 3.508623e-04	k: 1115	n:3370000
Cons ci ratio: 7.422289e-02	ci left: 7.963023e-04	ci right 8.579730e-04	k: 2786	n:3370000
KS ci ratio: 1.035936e-02	ci left: 4.054611e-02	ci right 4.096862e-02	k: 137351	n:3370000
SYTL1   3370000 perm   5731 sec   (588 perm/sec)   p_kst 4.075697e-02   p_cons 8.267062e-04   p_joint 3.308605e-04

Joint ci ratio: 1.171653e-01	ci left: 3.116650e-04	ci right 3.507378e-04	k: 1118	n:3380000
Cons ci ratio: 7.411659e-02	ci left: 7.962694e-04	ci right 8.578454e-04	k: 2794	n:3380000
KS ci ratio: 1.034334e-02	ci left: 4.055157e-02	ci right 4.097348e-02	k: 137776	n:3380000
SYTL1   3380000 perm   5763 sec   (587 perm/sec)   p_kst 4.076213e-02   p_cons 8.266272e-04   p_joint 3.307692e-04

Joint ci ratio: 1.170608e-01	ci left: 3.113183e-04	ci right 3.503104e-04	k: 1120	n:3390000
Cons ci ratio: 7.403719e-02	ci left: 7.956576e-04	ci right 8.571176e-04	k: 2800	n:3390000
KS ci ratio: 1.032786e-02	ci left: 4.055346e-02	ci right 4.097475e-02	k: 138189	n:3390000
SYTL1   3390000 perm   5794 sec   (585 perm/sec)   p_kst 4.076372e-02   p_cons 8.259587e-04   p_joint 3.303835e-04

Joint ci ratio: 1.167487e-01	ci left: 3.121158e-04	ci right 3.510964e-04	k: 1126	n:3400000
Cons ci ratio: 7.390537e-02	ci left: 7.962042e-04	ci right 8.575922e-04	k: 2810	n:3400000
KS ci ratio: 1.031257e-02	ci left: 4.055447e-02	ci right 4.097514e-02	k: 138599	n:3400000
SYTL1   3400000 perm   5826 sec   (584 perm/sec)   p_kst 4.076441e-02   p_cons 8.264706e-04   p_joint 3.311765e-04

Joint ci ratio: 1.165936e-01	ci left: 3.120546e-04	ci right 3.509722e-04	k: 1129	n:3410000
Cons ci ratio: 7.378733e-02	ci left: 7.964599e-04	ci right 8.577653e-04	k: 2819	n:3410000
KS ci ratio: 1.029631e-02	ci left: 4.056336e-02	ci right 4.098346e-02	k: 139036	n:3410000
SYTL1   3410000 perm   5859 sec   (582 perm/sec)   p_kst 4.077302e-02   p_cons 8.266862e-04   p_joint 3.310850e-04

Joint ci ratio: 1.163365e-01	ci left: 3.125616e-04	ci right 3.514505e-04	k: 1134	n:3420000
Cons ci ratio: 7.363080e-02	ci left: 7.975752e-04	ci right 8.588306e-04	k: 2831	n:3420000
KS ci ratio: 1.028162e-02	ci left: 4.056083e-02	ci right 4.098030e-02	k: 139434	n:3420000
SYTL1   3420000 perm   5891 sec   (581 perm/sec)   p_kst 4.077018e-02   p_cons 8.277778e-04   p_joint 3.315789e-04

Joint ci ratio: 1.160811e-01	ci left: 3.130657e-04	ci right 3.519260e-04	k: 1139	n:3430000
Cons ci ratio: 7.344941e-02	ci left: 7.992565e-04	ci right 8.604834e-04	k: 2845	n:3430000
KS ci ratio: 1.026729e-02	ci left: 4.055599e-02	ci right 4.097482e-02	k: 139824	n:3430000
SYTL1   3430000 perm   5923 sec   (579 perm/sec)   p_kst 4.076501e-02   p_cons 8.294461e-04   p_joint 3.320700e-04

Joint ci ratio: 1.159286e-01	ci left: 3.130024e-04	ci right 3.518003e-04	k: 1142	n:3440000
Cons ci ratio: 7.337213e-02	ci left: 7.986452e-04	ci right 8.597582e-04	k: 2851	n:3440000
KS ci ratio: 1.025338e-02	ci left: 4.054856e-02	ci right 4.096675e-02	k: 140205	n:3440000
SYTL1   3440000 perm   5955 sec   (578 perm/sec)   p_kst 4.075727e-02   p_cons 8.287791e-04   p_joint 3.319767e-04

Joint ci ratio: 1.157768e-01	ci left: 3.129395e-04	ci right 3.516753e-04	k: 1145	n:3450000
Cons ci ratio: 7.321822e-02	ci left: 7.997448e-04	ci right 8.608081e-04	k: 2863	n:3450000
KS ci ratio: 1.023944e-02	ci left: 4.054176e-02	ci right 4.095930e-02	k: 140588	n:3450000
SYTL1   3450000 perm   5988 sec   (576 perm/sec)   p_kst 4.075014e-02   p_cons 8.298551e-04   p_joint 3.318841e-04

Joint ci ratio: 1.154248e-01	ci left: 3.139997e-04	ci right 3.527405e-04	k: 1152	n:3460000
Cons ci ratio: 7.309071e-02	ci left: 8.002708e-04	ci right 8.612633e-04	k: 2873	n:3460000
KS ci ratio: 1.022522e-02	ci left: 4.053759e-02	ci right 4.095451e-02	k: 140980	n:3460000
SYTL1   3460000 perm   6020 sec   (575 perm/sec)   p_kst 4.074566e-02   p_cons 8.303468e-04   p_joint 3.329480e-04

Joint ci ratio: 1.152749e-01	ci left: 3.139344e-04	ci right 3.526135e-04	k: 1155	n:3470000
Cons ci ratio: 7.298920e-02	ci left: 8.002279e-04	ci right 8.611288e-04	k: 2881	n:3470000
KS ci ratio: 1.021045e-02	ci left: 4.053805e-02	ci right 4.095436e-02	k: 141388	n:3470000
SYTL1   3470000 perm   6053 sec   (573 perm/sec)   p_kst 4.074582e-02   p_cons 8.302594e-04   p_joint 3.328530e-04

Joint ci ratio: 1.151753e-01	ci left: 3.135904e-04	ci right 3.521915e-04	k: 1157	n:3480000
Cons ci ratio: 7.285027e-02	ci left: 8.010317e-04	ci right 8.618728e-04	k: 2892	n:3480000
KS ci ratio: 1.019583e-02	ci left: 4.053793e-02	ci right 4.095364e-02	k: 141794	n:3480000
SYTL1   3480000 perm   6086 sec   (572 perm/sec)   p_kst 4.074540e-02   p_cons 8.310345e-04   p_joint 3.324713e-04

Joint ci ratio: 1.147795e-01	ci left: 3.149182e-04	ci right 3.535405e-04	k: 1165	n:3490000
Cons ci ratio: 7.266207e-02	ci left: 8.029563e-04	ci right 8.637794e-04	k: 2907	n:3490000
KS ci ratio: 1.018040e-02	ci left: 4.054438e-02	ci right 4.095953e-02	k: 142223	n:3490000
SYTL1   3490000 perm   6119 sec   (570 perm/sec)   p_kst 4.075158e-02   p_cons 8.329513e-04   p_joint 3.338109e-04

Joint ci ratio: 1.146321e-01	ci left: 3.148510e-04	ci right 3.534121e-04	k: 1168	n:3500000
Cons ci ratio: 7.258725e-02	ci left: 8.023453e-04	ci right 8.630569e-04	k: 2913	n:3500000
KS ci ratio: 1.016483e-02	ci left: 4.055251e-02	ci right 4.096710e-02	k: 142658	n:3500000
SYTL1   3500000 perm   6151 sec   (569 perm/sec)   p_kst 4.075943e-02   p_cons 8.322857e-04   p_joint 3.337143e-04

Joint ci ratio: 1.145831e-01	ci left: 3.142307e-04	ci right 3.526983e-04	k: 1169	n:3510000
Cons ci ratio: 7.250024e-02	ci left: 8.020175e-04	ci right 8.626285e-04	k: 2920	n:3510000
KS ci ratio: 1.014966e-02	ci left: 4.055804e-02	ci right 4.097206e-02	k: 143084	n:3510000
SYTL1   3510000 perm   6185 sec   (568 perm/sec)   p_kst 4.076467e-02   p_cons 8.319088e-04   p_joint 3.330484e-04

Joint ci ratio: 1.143878e-01	ci left: 3.144419e-04	ci right 3.528652e-04	k: 1173	n:3520000
Cons ci ratio: 7.241354e-02	ci left: 8.016916e-04	ci right 8.622026e-04	k: 2927	n:3520000
KS ci ratio: 1.013489e-02	ci left: 4.056098e-02	ci right 4.097443e-02	k: 143501	n:3520000
SYTL1   3520000 perm   6218 sec   (566 perm/sec)   p_kst 4.076733e-02   p_cons 8.315341e-04   p_joint 3.332386e-04

Joint ci ratio: 1.141934e-01	ci left: 3.146519e-04	ci right 3.530311e-04	k: 1177	n:3530000
Cons ci ratio: 7.232715e-02	ci left: 8.013677e-04	ci right 8.617789e-04	k: 2934	n:3530000
KS ci ratio: 1.011967e-02	ci left: 4.056787e-02	ci right 4.098076e-02	k: 143932	n:3530000
SYTL1   3530000 perm   6251 sec   (565 perm/sec)   p_kst 4.077394e-02   p_cons 8.311615e-04   p_joint 3.334278e-04

Joint ci ratio: 1.141450e-01	ci left: 3.140374e-04	ci right 3.523244e-04	k: 1178	n:3540000
Cons ci ratio: 7.225335e-02	ci left: 8.007682e-04	ci right 8.610701e-04	k: 2940	n:3540000
KS ci ratio: 1.010587e-02	ci left: 4.056429e-02	ci right 4.097658e-02	k: 144326	n:3540000
SYTL1   3540000 perm   6284 sec   (563 perm/sec)   p_kst 4.077006e-02   p_cons 8.305085e-04   p_joint 3.327684e-04

Joint ci ratio: 1.137596e-01	ci left: 3.153421e-04	ci right 3.536496e-04	k: 1186	n:3550000
Cons ci ratio: 7.206973e-02	ci left: 8.026616e-04	ci right 8.629461e-04	k: 2955	n:3550000
KS ci ratio: 1.009139e-02	ci left: 4.056635e-02	ci right 4.097807e-02	k: 144740	n:3550000
SYTL1   3550000 perm   6318 sec   (562 perm/sec)   p_kst 4.077183e-02   p_cons 8.323944e-04   p_joint 3.340845e-04

Joint ci ratio: 1.134731e-01	ci left: 3.160938e-04	ci right 3.543895e-04	k: 1192	n:3560000
Cons ci ratio: 7.193598e-02	ci left: 8.034412e-04	ci right 8.636676e-04	k: 2966	n:3560000
KS ci ratio: 1.007745e-02	ci left: 4.056475e-02	ci right 4.097588e-02	k: 145141	n:3560000
SYTL1   3560000 perm   6351 sec   (561 perm/sec)   p_kst 4.076994e-02   p_cons 8.331461e-04   p_joint 3.348315e-04

Joint ci ratio: 1.133307e-01	ci left: 3.160249e-04	ci right 3.542610e-04	k: 1195	n:3570000
Cons ci ratio: 7.181504e-02	ci left: 8.039415e-04	ci right 8.640998e-04	k: 2976	n:3570000
KS ci ratio: 1.006317e-02	ci left: 4.056624e-02	ci right 4.097680e-02	k: 145553	n:3570000
SYTL1   3570000 perm   6384 sec   (559 perm/sec)   p_kst 4.077115e-02   p_cons 8.336134e-04   p_joint 3.347339e-04

Joint ci ratio: 1.130945e-01	ci left: 3.164993e-04	ci right 3.547076e-04	k: 1200	n:3580000
Cons ci ratio: 7.167070e-02	ci left: 8.049877e-04	ci right 8.650982e-04	k: 2988	n:3580000
KS ci ratio: 1.004949e-02	ci left: 4.056354e-02	ci right 4.097351e-02	k: 145950	n:3580000
SYTL1   3580000 perm   6417 sec   (558 perm/sec)   p_kst 4.076816e-02   p_cons 8.346369e-04   p_joint 3.351955e-04

Joint ci ratio: 1.129067e-01	ci left: 3.167004e-04	ci right 3.548652e-04	k: 1204	n:3590000
Cons ci ratio: 7.153916e-02	ci left: 8.057546e-04	ci right 8.658073e-04	k: 2999	n:3590000
KS ci ratio: 1.003666e-02	ci left: 4.055474e-02	ci right 4.096410e-02	k: 146325	n:3590000
SYTL1   3590000 perm   6452 sec   (556 perm/sec)   p_kst 4.075905e-02   p_cons 8.353760e-04   p_joint 3.353760e-04

Joint ci ratio: 1.128131e-01	ci left: 3.163605e-04	ci right 3.544507e-04	k: 1206	n:3600000
Cons ci ratio: 7.147965e-02	ci left: 8.048804e-04	ci right 8.648160e-04	k: 3004	n:3600000
KS ci ratio: 1.002401e-02	ci left: 4.054489e-02	ci right 4.095363e-02	k: 146696	n:3600000
SYTL1   3600000 perm   6486 sec   (555 perm/sec)   p_kst 4.074889e-02   p_cons 8.344444e-04   p_joint 3.350000e-04

Joint ci ratio: 1.125801e-01	ci left: 3.168302e-04	ci right 3.548929e-04	k: 1211	n:3610000
Cons ci ratio: 7.137285e-02	ci left: 8.050994e-04	ci right 8.649580e-04	k: 3013	n:3610000
KS ci ratio: 1.001035e-02	ci left: 4.054338e-02	ci right 4.095154e-02	k: 147097	n:3610000
SYTL1   3610000 perm   6520 sec   (554 perm/sec)   p_kst 4.074709e-02   p_cons 8.346260e-04   p_joint 3.354571e-04

Joint ci ratio: 1.122564e-01	ci left: 3.178343e-04	ci right 3.559006e-04	k: 1218	n:3620000
Cons ci ratio: 7.118408e-02	ci left: 8.072165e-04	ci right 8.670673e-04	k: 3029	n:3620000
KS ci ratio: 9.997340e-03	ci left: 4.053719e-02	ci right 4.094476e-02	k: 147481	n:3620000
SYTL1   3620000 perm   6554 sec   (552 perm/sec)   p_kst 4.074061e-02   p_cons 8.367403e-04   p_joint 3.364641e-04

Joint ci ratio: 1.120268e-01	ci left: 3.182975e-04	ci right 3.563362e-04	k: 1223	n:3630000
Cons ci ratio: 7.106689e-02	ci left: 8.076986e-04	ci right 8.674824e-04	k: 3039	n:3630000
KS ci ratio: 9.983012e-03	ci left: 4.054176e-02	ci right 4.094878e-02	k: 147904	n:3630000
SYTL1   3630000 perm   6588 sec   (551 perm/sec)   p_kst 4.074490e-02   p_cons 8.371901e-04   p_joint 3.369146e-04

Joint ci ratio: 1.118442e-01	ci left: 3.184912e-04	ci right 3.564869e-04	k: 1227	n:3640000
Cons ci ratio: 7.100855e-02	ci left: 8.068289e-04	ci right 8.664973e-04	k: 3044	n:3640000
KS ci ratio: 9.969410e-03	ci left: 4.054109e-02	ci right 4.094755e-02	k: 148308	n:3640000
SYTL1   3640000 perm   6622 sec   (550 perm/sec)   p_kst 4.074396e-02   p_cons 8.362637e-04   p_joint 3.370879e-04

Joint ci ratio: 1.116625e-01	ci left: 3.186839e-04	ci right 3.566367e-04	k: 1231	n:3650000
Cons ci ratio: 7.084582e-02	ci left: 8.083860e-04	ci right 8.680269e-04	k: 3058	n:3650000
KS ci ratio: 9.955306e-03	ci left: 4.054480e-02	ci right 4.095072e-02	k: 148728	n:3650000
SYTL1   3650000 perm   6656 sec   (548 perm/sec)   p_kst 4.074740e-02   p_cons 8.378082e-04   p_joint 3.372603e-04

Joint ci ratio: 1.115268e-01	ci left: 3.186099e-04	ci right 3.565048e-04	k: 1234	n:3660000
Cons ci ratio: 7.071875e-02	ci left: 8.091296e-04	ci right 8.687139e-04	k: 3069	n:3660000
KS ci ratio: 9.941713e-03	ci left: 4.054495e-02	ci right 4.095031e-02	k: 149135	n:3660000
SYTL1   3660000 perm   6691 sec   (547 perm/sec)   p_kst 4.074727e-02   p_cons 8.385246e-04   p_joint 3.371585e-04

Joint ci ratio: 1.114366e-01	ci left: 3.182716e-04	ci right 3.560936e-04	k: 1236	n:3670000
Cons ci ratio: 7.064977e-02	ci left: 8.085308e-04	ci right 8.680106e-04	k: 3075	n:3670000
KS ci ratio: 9.928003e-03	ci left: 4.054645e-02	ci right 4.095127e-02	k: 149547	n:3670000
SYTL1   3670000 perm   6726 sec   (546 perm/sec)   p_kst 4.074850e-02   p_cons 8.378747e-04   p_joint 3.367847e-04

Joint ci ratio: 1.113017e-01	ci left: 3.181992e-04	ci right 3.559639e-04	k: 1239	n:3680000
Cons ci ratio: 7.059245e-02	ci left: 8.076684e-04	ci right 8.670346e-04	k: 3080	n:3680000
KS ci ratio: 9.914866e-03	ci left: 4.054389e-02	ci right 4.094814e-02	k: 149944	n:3680000
SYTL1   3680000 perm   6760 sec   (544 perm/sec)   p_kst 4.074565e-02   p_cons 8.369565e-04   p_joint 3.366848e-04

Joint ci ratio: 1.110334e-01	ci left: 3.189177e-04	ci right 3.566704e-04	k: 1245	n:3690000
Cons ci ratio: 7.052384e-02	ci left: 8.070769e-04	ci right 8.663396e-04	k: 3086	n:3690000
KS ci ratio: 9.901644e-03	ci left: 4.054241e-02	ci right 4.094611e-02	k: 150345	n:3690000
SYTL1   3690000 perm   6794 sec   (543 perm/sec)   p_kst 4.074390e-02   p_cons 8.363144e-04   p_joint 3.373984e-04

Joint ci ratio: 1.109000e-01	ci left: 3.188440e-04	ci right 3.565397e-04	k: 1248	n:3700000
Cons ci ratio: 7.039850e-02	ci left: 8.078163e-04	ci right 8.670235e-04	k: 3097	n:3700000
KS ci ratio: 9.888269e-03	ci left: 4.054257e-02	ci right 4.094572e-02	k: 150752	n:3700000
SYTL1   3700000 perm   6829 sec   (542 perm/sec)   p_kst 4.074378e-02   p_cons 8.370270e-04   p_joint 3.372973e-04

Joint ci ratio: 1.168022e-01	ci left: 2.857742e-04	ci right 3.214823e-04	k: 1125	n:3710000
Cons ci ratio: 7.031911e-02	ci left: 8.074924e-04	ci right 8.666065e-04	k: 3104	n:3710000
KS ci ratio: 9.874234e-03	ci left: 4.054837e-02	ci right 4.095100e-02	k: 151180	n:3710000
SYTL1   3710000 perm   6863 sec   (541 perm/sec)   p_kst 4.074933e-02   p_cons 8.366577e-04   p_joint 3.032345e-04

Joint ci ratio: 1.167504e-01	ci left: 2.852669e-04	ci right 3.208948e-04	k: 1126	n:3720000
Cons ci ratio: 7.027391e-02	ci left: 8.063781e-04	ci right 8.653711e-04	k: 3108	n:3720000
KS ci ratio: 9.862292e-03	ci left: 4.053805e-02	ci right 4.094009e-02	k: 151548	n:3720000
SYTL1   3720000 perm   6899 sec   (539 perm/sec)   p_kst 4.073871e-02   p_cons 8.354839e-04   p_joint 3.026882e-04

Joint ci ratio: 1.105906e-01	ci left: 3.181043e-04	ci right 3.556008e-04	k: 1255	n:3730000
Cons ci ratio: 7.020622e-02	ci left: 8.057966e-04	ci right 8.646879e-04	k: 3114	n:3730000
KS ci ratio: 9.848570e-03	ci left: 4.054222e-02	ci right 4.094374e-02	k: 151970	n:3730000
SYTL1   3730000 perm   6933 sec   (538 perm/sec)   p_kst 4.074263e-02   p_cons 8.348525e-04   p_joint 3.364611e-04

Joint ci ratio: 1.165438e-01	ci left: 2.847797e-04	ci right 3.202795e-04	k: 1130	n:3740000
Cons ci ratio: 7.007134e-02	ci left: 8.067943e-04	ci right 8.656407e-04	k: 3126	n:3740000
KS ci ratio: 9.835779e-03	ci left: 4.053944e-02	ci right 4.094041e-02	k: 152366	n:3740000
SYTL1   3740000 perm   6968 sec   (537 perm/sec)   p_kst 4.073957e-02   p_cons 8.358289e-04   p_joint 3.021390e-04

Joint ci ratio: 1.163895e-01	ci left: 2.847970e-04	ci right 3.202487e-04	k: 1133	n:3750000
Cons ci ratio: 7.001542e-02	ci left: 8.059528e-04	ci right 8.646890e-04	k: 3131	n:3750000
KS ci ratio: 9.822401e-03	ci left: 4.054173e-02	ci right 4.094218e-02	k: 152781	n:3750000
SYTL1   3750000 perm   7003 sec   (536 perm/sec)   p_kst 4.074160e-02   p_cons 8.349333e-04   p_joint 3.021333e-04

Joint ci ratio: 1.162870e-01	ci left: 2.845560e-04	ci right 3.199444e-04	k: 1135	n:3760000
Cons ci ratio: 6.992617e-02	ci left: 8.058998e-04	ci right 8.645542e-04	k: 3139	n:3760000
KS ci ratio: 9.810179e-03	ci left: 4.053526e-02	ci right 4.093513e-02	k: 153163	n:3760000
SYTL1   3760000 perm   7038 sec   (534 perm/sec)   p_kst 4.073484e-02   p_cons 8.348404e-04   p_joint 3.018617e-04

Joint ci ratio: 1.161338e-01	ci left: 2.845738e-04	ci right 3.199146e-04	k: 1138	n:3770000
Cons ci ratio: 6.987060e-02	ci left: 8.050652e-04	ci right 8.636104e-04	k: 3144	n:3770000
KS ci ratio: 9.797205e-03	ci left: 4.053516e-02	ci right 4.093451e-02	k: 153569	n:3770000
SYTL1   3770000 perm   7073 sec   (533 perm/sec)   p_kst 4.073448e-02   p_cons 8.339523e-04   p_joint 3.018568e-04

Joint ci ratio: 1.158290e-01	ci left: 2.853623e-04	ci right 3.207016e-04	k: 1144	n:3780000
Cons ci ratio: 6.979298e-02	ci left: 8.047549e-04	ci right 8.632099e-04	k: 3151	n:3780000
KS ci ratio: 9.784646e-03	ci left: 4.053217e-02	ci right 4.093097e-02	k: 153964	n:3780000
SYTL1   3780000 perm   7108 sec   (532 perm/sec)   p_kst 4.073122e-02   p_cons 8.335979e-04   p_joint 3.026455e-04

Joint ci ratio: 1.157280e-01	ci left: 2.851218e-04	ci right 3.203984e-04	k: 1146	n:3790000
Cons ci ratio: 6.973772e-02	ci left: 8.039278e-04	ci right 8.622746e-04	k: 3156	n:3790000
KS ci ratio: 9.771376e-03	ci left: 4.053525e-02	ci right 4.093353e-02	k: 154382	n:3790000
SYTL1   3790000 perm   7144 sec   (531 perm/sec)   p_kst 4.073404e-02   p_cons 8.327177e-04   p_joint 3.023747e-04

Joint ci ratio: 1.157281e-01	ci left: 2.843714e-04	ci right 3.195553e-04	k: 1146	n:3800000
Cons ci ratio: 6.963852e-02	ci left: 8.041393e-04	ci right 8.624151e-04	k: 3165	n:3800000
KS ci ratio: 9.758818e-03	ci left: 4.053305e-02	ci right 4.093080e-02	k: 154780	n:3800000
SYTL1   3800000 perm   7180 sec   (529 perm/sec)   p_kst 4.073158e-02   p_cons 8.328947e-04   p_joint 3.015789e-04

Joint ci ratio: 1.154766e-01	ci left: 2.848994e-04	ci right 3.200668e-04	k: 1151	n:3810000
Cons ci ratio: 6.953975e-02	ci left: 8.043498e-04	ci right 8.625548e-04	k: 3174	n:3810000
KS ci ratio: 9.747322e-03	ci left: 4.052276e-02	ci right 4.091994e-02	k: 155147	n:3810000
SYTL1   3810000 perm   7216 sec   (528 perm/sec)   p_kst 4.072100e-02   p_cons 8.330709e-04   p_joint 3.020997e-04

Joint ci ratio: 1.153266e-01	ci left: 2.849163e-04	ci right 3.200369e-04	k: 1154	n:3820000
Cons ci ratio: 6.950697e-02	ci left: 8.030159e-04	ci right 8.610959e-04	k: 3177	n:3820000
KS ci ratio: 9.734791e-03	ci left: 4.052113e-02	ci right 4.091778e-02	k: 155547	n:3820000
SYTL1   3820000 perm   7252 sec   (527 perm/sec)   p_kst 4.071911e-02   p_cons 8.316754e-04   p_joint 3.020942e-04

Joint ci ratio: 1.152269e-01	ci left: 2.846795e-04	ci right 3.197386e-04	k: 1156	n:3830000
Cons ci ratio: 6.941965e-02	ci left: 8.029717e-04	ci right 8.609726e-04	k: 3185	n:3830000
KS ci ratio: 9.720911e-03	ci left: 4.053072e-02	ci right 4.092689e-02	k: 155990	n:3830000
SYTL1   3830000 perm   7287 sec   (526 perm/sec)   p_kst 4.072846e-02   p_cons 8.315927e-04   p_joint 3.018277e-04

Joint ci ratio: 1.149292e-01	ci left: 2.854557e-04	ci right 3.205133e-04	k: 1162	n:3840000
Cons ci ratio: 6.934353e-02	ci left: 8.026719e-04	ci right 8.605850e-04	k: 3192	n:3840000
KS ci ratio: 9.707899e-03	ci left: 4.053376e-02	ci right 4.092943e-02	k: 156408	n:3840000
SYTL1   3840000 perm   7323 sec   (524 perm/sec)   p_kst 4.073125e-02   p_cons 8.312500e-04   p_joint 3.026042e-04

Joint ci ratio: 1.087447e-01	ci left: 3.190519e-04	ci right 3.559921e-04	k: 1298	n:3850000
Cons ci ratio: 6.928933e-02	ci left: 8.018632e-04	ci right 8.596710e-04	k: 3197	n:3850000
KS ci ratio: 9.695454e-03	ci left: 4.053264e-02	ci right 4.092779e-02	k: 156810	n:3850000
SYTL1   3850000 perm   7360 sec   (523 perm/sec)   p_kst 4.072987e-02   p_cons 8.303896e-04   p_joint 3.371429e-04

Joint ci ratio: 1.144870e-01	ci left: 2.862414e-04	ci right 3.212511e-04	k: 1171	n:3860000
Cons ci ratio: 6.918123e-02	ci left: 8.023317e-04	ci right 8.600794e-04	k: 3207	n:3860000
KS ci ratio: 9.683507e-03	ci left: 4.052791e-02	ci right 4.092252e-02	k: 157198	n:3860000
SYTL1   3860000 perm   7396 sec   (522 perm/sec)   p_kst 4.072487e-02   p_cons 8.308290e-04   p_joint 3.033679e-04

Joint ci ratio: 1.082458e-01	ci left: 3.204197e-04	ci right 3.573373e-04	k: 1310	n:3870000
Cons ci ratio: 6.913818e-02	ci left: 8.012742e-04	ci right 8.589084e-04	k: 3211	n:3870000
KS ci ratio: 9.670292e-03	ci left: 4.053377e-02	ci right 4.092790e-02	k: 157627	n:3870000
SYTL1   3870000 perm   7434 sec   (521 perm/sec)   p_kst 4.073049e-02   p_cons 8.297158e-04   p_joint 3.385013e-04

Joint ci ratio: 1.139534e-01	ci left: 2.875200e-04	ci right 3.225112e-04	k: 1182	n:3880000
Cons ci ratio: 6.900936e-02	ci left: 8.022484e-04	ci right 8.598409e-04	k: 3223	n:3880000
KS ci ratio: 9.658310e-03	ci left: 4.053009e-02	ci right 4.092369e-02	k: 158019	n:3880000
SYTL1   3880000 perm   7472 sec   (519 perm/sec)   p_kst 4.072655e-02   p_cons 8.306701e-04   p_joint 3.046392e-04

Joint ci ratio: 1.079170e-01	ci left: 3.207732e-04	ci right 3.576122e-04	k: 1318	n:3890000
Cons ci ratio: 6.895594e-02	ci left: 8.014493e-04	ci right 8.589380e-04	k: 3228	n:3890000
KS ci ratio: 9.645230e-03	ci left: 4.053566e-02	ci right 4.092878e-02	k: 158447	n:3890000
SYTL1   3890000 perm   7508 sec   (518 perm/sec)   p_kst 4.073188e-02   p_cons 8.298201e-04   p_joint 3.388175e-04

Joint ci ratio: 1.137613e-01	ci left: 2.870419e-04	ci right 3.219121e-04	k: 1186	n:3900000
Cons ci ratio: 6.887068e-02	ci left: 8.014102e-04	ci right 8.588223e-04	k: 3236	n:3900000
KS ci ratio: 9.632993e-03	ci left: 4.053481e-02	ci right 4.092742e-02	k: 158850	n:3900000
SYTL1   3900000 perm   7545 sec   (517 perm/sec)   p_kst 4.073077e-02   p_cons 8.297436e-04   p_joint 3.041026e-04

Joint ci ratio: 1.135701e-01	ci left: 2.873018e-04	ci right 3.221409e-04	k: 1190	n:3910000
Cons ci ratio: 6.881758e-02	ci left: 8.006173e-04	ci right 8.579266e-04	k: 3241	n:3910000
KS ci ratio: 9.621401e-03	ci left: 4.052911e-02	ci right 4.092119e-02	k: 159234	n:3910000
SYTL1   3910000 perm   7581 sec   (516 perm/sec)   p_kst 4.072481e-02   p_cons 8.289003e-04   p_joint 3.043478e-04

Joint ci ratio: 1.134273e-01	ci left: 2.873124e-04	ci right 3.221061e-04	k: 1193	n:3920000
Cons ci ratio: 6.875401e-02	ci left: 8.000792e-04	ci right 8.572949e-04	k: 3247	n:3920000
KS ci ratio: 9.608532e-03	ci left: 4.053413e-02	ci right 4.092573e-02	k: 159660	n:3920000
SYTL1   3920000 perm   7617 sec   (515 perm/sec)   p_kst 4.072959e-02   p_cons 8.283163e-04   p_joint 3.043367e-04

Joint ci ratio: 1.133799e-01	ci left: 2.868286e-04	ci right 3.215482e-04	k: 1194	n:3930000
Cons ci ratio: 6.866949e-02	ci left: 8.000440e-04	ci right 8.571841e-04	k: 3255	n:3930000
KS ci ratio: 9.595403e-03	ci left: 4.054167e-02	ci right 4.093280e-02	k: 160096	n:3930000
SYTL1   3930000 perm   7654 sec   (513 perm/sec)   p_kst 4.073690e-02   p_cons 8.282443e-04   p_joint 3.038168e-04

Joint ci ratio: 1.133799e-01	ci left: 2.861006e-04	ci right 3.207321e-04	k: 1194	n:3940000
Cons ci ratio: 6.862739e-02	ci left: 7.990113e-04	ci right 8.560412e-04	k: 3259	n:3940000
KS ci ratio: 9.583853e-03	ci left: 4.053676e-02	ci right 4.092737e-02	k: 160483	n:3940000
SYTL1   3940000 perm   7691 sec   (512 perm/sec)   p_kst 4.073173e-02   p_cons 8.271574e-04   p_joint 3.030457e-04

Joint ci ratio: 1.133326e-01	ci left: 2.856223e-04	ci right 3.201805e-04	k: 1195	n:3950000
Cons ci ratio: 6.857485e-02	ci left: 7.982325e-04	ci right 8.551615e-04	k: 3264	n:3950000
KS ci ratio: 9.571382e-03	ci left: 4.053970e-02	ci right 4.092983e-02	k: 160901	n:3950000
SYTL1   3950000 perm   7728 sec   (511 perm/sec)   p_kst 4.073443e-02   p_cons 8.263291e-04   p_joint 3.025316e-04

Joint ci ratio: 1.132379e-01	ci left: 2.853917e-04	ci right 3.198913e-04	k: 1197	n:3960000
Cons ci ratio: 6.851195e-02	ci left: 7.977060e-04	ci right 8.545432e-04	k: 3270	n:3960000
KS ci ratio: 9.558683e-03	ci left: 4.054490e-02	ci right 4.093456e-02	k: 161328	n:3960000
SYTL1   3960000 perm   7767 sec   (510 perm/sec)   p_kst 4.073939e-02   p_cons 8.257576e-04   p_joint 3.022727e-04

Joint ci ratio: 1.132380e-01	ci left: 2.846729e-04	ci right 3.190855e-04	k: 1197	n:3970000
Cons ci ratio: 6.847013e-02	ci left: 7.966869e-04	ci right 8.534155e-04	k: 3274	n:3970000
KS ci ratio: 9.547326e-03	ci left: 4.053952e-02	ci right 4.092866e-02	k: 161713	n:3970000
SYTL1   3970000 perm   7804 sec   (509 perm/sec)   p_kst 4.073375e-02   p_cons 8.246851e-04   p_joint 3.015113e-04

Joint ci ratio: 1.130024e-01	ci left: 2.851783e-04	ci right 3.195756e-04	k: 1202	n:3980000
Cons ci ratio: 6.833460e-02	ci left: 7.978957e-04	ci right 8.545934e-04	k: 3287	n:3980000
KS ci ratio: 9.536407e-03	ci left: 4.053090e-02	ci right 4.091952e-02	k: 162085	n:3980000
SYTL1   3980000 perm   7840 sec   (508 perm/sec)   p_kst 4.072487e-02   p_cons 8.258794e-04   p_joint 3.020101e-04

Joint ci ratio: 1.128617e-01	ci left: 2.851942e-04	ci right 3.195478e-04	k: 1205	n:3990000
Cons ci ratio: 6.825162e-02	ci left: 7.978667e-04	ci right 8.544908e-04	k: 3295	n:3990000
KS ci ratio: 9.526260e-03	ci left: 4.051633e-02	ci right 4.090439e-02	k: 162433	n:3990000
SYTL1   3990000 perm   7877 sec   (507 perm/sec)   p_kst 4.071003e-02   p_cons 8.258145e-04   p_joint 3.020050e-04

Joint ci ratio: 1.126750e-01	ci left: 2.854531e-04	ci right 3.197771e-04	k: 1209	n:4000000
Cons ci ratio: 6.813799e-02	ci left: 7.985752e-04	ci right 8.551515e-04	k: 3306	n:4000000
KS ci ratio: 9.514744e-03	ci left: 4.051330e-02	ci right 4.090086e-02	k: 162827	n:4000000
SYTL1   4000000 perm   7914 sec   (505 perm/sec)   p_kst 4.070675e-02   p_cons 8.265000e-04   p_joint 3.022500e-04

Joint ci ratio: 1.126285e-01	ci left: 2.849835e-04	ci right 3.192361e-04	k: 1210	n:4010000
Cons ci ratio: 6.807628e-02	ci left: 7.980545e-04	ci right 8.545407e-04	k: 3312	n:4010000
KS ci ratio: 9.502966e-03	ci left: 4.051278e-02	ci right 4.089985e-02	k: 163231	n:4010000
SYTL1   4010000 perm   7951 sec   (504 perm/sec)   p_kst 4.070599e-02   p_cons 8.259352e-04   p_joint 3.017456e-04

Joint ci ratio: 1.124430e-01	ci left: 2.852417e-04	ci right 3.194650e-04	k: 1214	n:4020000
Cons ci ratio: 6.797376e-02	ci left: 7.985145e-04	ci right 8.549448e-04	k: 3322	n:4020000
KS ci ratio: 9.491867e-03	ci left: 4.050705e-02	ci right 4.089361e-02	k: 163614	n:4020000
SYTL1   4020000 perm   7989 sec   (503 perm/sec)   p_kst 4.070000e-02   p_cons 8.263682e-04   p_joint 3.019900e-04

Joint ci ratio: 1.123967e-01	ci left: 2.847750e-04	ci right 3.189274e-04	k: 1215	n:4030000
Cons ci ratio: 6.790229e-02	ci left: 7.982406e-04	ci right 8.545898e-04	k: 3329	n:4030000
KS ci ratio: 9.480836e-03	ci left: 4.050110e-02	ci right 4.088715e-02	k: 163996	n:4030000
SYTL1   4030000 perm   8026 sec   (502 perm/sec)   p_kst 4.069380e-02   p_cons 8.260546e-04   p_joint 3.014888e-04

Joint ci ratio: 1.122123e-01	ci left: 2.850324e-04	ci right 3.191558e-04	k: 1219	n:4040000
Cons ci ratio: 6.778024e-02	ci left: 7.991846e-04	ci right 8.554952e-04	k: 3341	n:4040000
KS ci ratio: 9.469243e-03	ci left: 4.050012e-02	ci right 4.088569e-02	k: 164398	n:4040000
SYTL1   4040000 perm   8062 sec   (501 perm/sec)   p_kst 4.069257e-02   p_cons 8.269802e-04   p_joint 3.017327e-04

Joint ci ratio: 1.121664e-01	ci left: 2.845686e-04	ci right 3.186216e-04	k: 1220	n:4050000
Cons ci ratio: 6.773975e-02	ci left: 7.981823e-04	ci right 8.543872e-04	k: 3345	n:4050000
KS ci ratio: 9.458262e-03	ci left: 4.049446e-02	ci right 4.087953e-02	k: 164781	n:4050000
SYTL1   4050000 perm   8101 sec   (500 perm/sec)   p_kst 4.068667e-02   p_cons 8.259259e-04   p_joint 3.012346e-04

Joint ci ratio: 1.118462e-01	ci left: 2.855436e-04	ci right 3.196093e-04	k: 1227	n:4060000
Cons ci ratio: 6.767911e-02	ci left: 7.976691e-04	ci right 8.537857e-04	k: 3351	n:4060000
KS ci ratio: 9.446871e-03	ci left: 4.049252e-02	ci right 4.087710e-02	k: 165179	n:4060000
SYTL1   4060000 perm   8139 sec   (499 perm/sec)   p_kst 4.068448e-02   p_cons 8.253695e-04   p_joint 3.022167e-04

Joint ci ratio: 1.118007e-01	ci left: 2.850808e-04	ci right 3.190766e-04	k: 1228	n:4070000
Cons ci ratio: 6.758843e-02	ci left: 7.978831e-04	ci right 8.539366e-04	k: 3360	n:4070000
KS ci ratio: 9.435164e-03	ci left: 4.049353e-02	ci right 4.087764e-02	k: 165589	n:4070000
SYTL1   4070000 perm   8177 sec   (498 perm/sec)   p_kst 4.068526e-02   p_cons 8.255528e-04   p_joint 3.017199e-04

Joint ci ratio: 1.115739e-01	ci left: 2.855733e-04	ci right 3.195542e-04	k: 1233	n:4080000
Cons ci ratio: 6.751817e-02	ci left: 7.976142e-04	ci right 8.535883e-04	k: 3367	n:4080000
KS ci ratio: 9.422880e-03	ci left: 4.049967e-02	ci right 4.088334e-02	k: 166020	n:4080000
SYTL1   4080000 perm   8215 sec   (497 perm/sec)   p_kst 4.069118e-02   p_cons 8.252451e-04   p_joint 3.022059e-04

Joint ci ratio: 1.114386e-01	ci left: 2.855881e-04	ci right 3.195268e-04	k: 1236	n:4090000
Cons ci ratio: 6.743812e-02	ci left: 7.975871e-04	ci right 8.534903e-04	k: 3375	n:4090000
KS ci ratio: 9.411764e-03	ci left: 4.049651e-02	ci right 4.087969e-02	k: 166413	n:4090000
SYTL1   4090000 perm   8253 sec   (496 perm/sec)   p_kst 4.068778e-02   p_cons 8.251834e-04   p_joint 3.022005e-04

Joint ci ratio: 1.113486e-01	ci left: 2.853658e-04	ci right 3.192489e-04	k: 1238	n:4100000
Cons ci ratio: 6.734841e-02	ci left: 7.977999e-04	ci right 8.536407e-04	k: 3384	n:4100000
KS ci ratio: 9.400364e-03	ci left: 4.049604e-02	ci right 4.087875e-02	k: 166817	n:4100000
SYTL1   4100000 perm   8291 sec   (495 perm/sec)   p_kst 4.068707e-02   p_cons 8.253659e-04   p_joint 3.019512e-04

Joint ci ratio: 1.112588e-01	ci left: 2.851445e-04	ci right 3.189723e-04	k: 1240	n:4110000
Cons ci ratio: 6.728882e-02	ci left: 7.972940e-04	ci right 8.530481e-04	k: 3390	n:4110000
KS ci ratio: 9.387717e-03	ci left: 4.050626e-02	ci right 4.088855e-02	k: 167265	n:4110000
SYTL1   4110000 perm   8329 sec   (493 perm/sec)   p_kst 4.069708e-02   p_cons 8.248175e-04   p_joint 3.017032e-04

Joint ci ratio: 1.112141e-01	ci left: 2.846884e-04	ci right 3.184476e-04	k: 1241	n:4120000
Cons ci ratio: 6.720958e-02	ci left: 7.972679e-04	ci right 8.529520e-04	k: 3398	n:4120000
KS ci ratio: 9.377425e-03	ci left: 4.049729e-02	ci right 4.087908e-02	k: 167634	n:4120000
SYTL1   4120000 perm   8367 sec   (492 perm/sec)   p_kst 4.068786e-02   p_cons 8.247573e-04   p_joint 3.012136e-04

Joint ci ratio: 1.110800e-01	ci left: 2.847053e-04	ci right 3.184231e-04	k: 1244	n:4130000
Cons ci ratio: 6.708139e-02	ci left: 7.984324e-04	ci right 8.540873e-04	k: 3411	n:4130000
KS ci ratio: 9.365713e-03	ci left: 4.050045e-02	ci right 4.088179e-02	k: 168053	n:4130000
SYTL1   4130000 perm   8405 sec   (491 perm/sec)   p_kst 4.069080e-02   p_cons 8.259080e-04   p_joint 3.012107e-04

Joint ci ratio: 1.109464e-01	ci left: 2.847221e-04	ci right 3.183987e-04	k: 1247	n:4140000
Cons ci ratio: 6.701269e-02	ci left: 7.981663e-04	ci right 8.537434e-04	k: 3418	n:4140000
KS ci ratio: 9.354826e-03	ci left: 4.049709e-02	ci right 4.087795e-02	k: 168445	n:4140000
SYTL1   4140000 perm   8443 sec   (490 perm/sec)   p_kst 4.068720e-02   p_cons 8.256039e-04   p_joint 3.012077e-04

Joint ci ratio: 1.107248e-01	ci left: 2.852075e-04	ci right 3.188697e-04	k: 1252	n:4150000
Cons ci ratio: 6.691489e-02	ci left: 7.986123e-04	ci right 8.541362e-04	k: 3428	n:4150000
KS ci ratio: 9.344064e-03	ci left: 4.049302e-02	ci right 4.087340e-02	k: 168834	n:4150000
SYTL1   4150000 perm   8482 sec   (489 perm/sec)   p_kst 4.068289e-02   p_cons 8.260241e-04   p_joint 3.016867e-04

Joint ci ratio: 1.106807e-01	ci left: 2.847556e-04	ci right 3.183502e-04	k: 1253	n:4160000
Cons ci ratio: 6.685644e-02	ci left: 7.981107e-04	ci right 8.535494e-04	k: 3434	n:4160000
KS ci ratio: 9.333397e-03	ci left: 4.048849e-02	ci right 4.086839e-02	k: 169221	n:4160000
SYTL1   4160000 perm   8522 sec   (488 perm/sec)   p_kst 4.067813e-02   p_cons 8.254808e-04   p_joint 3.012019e-04

Joint ci ratio: 1.106807e-01	ci left: 2.840727e-04	ci right 3.175868e-04	k: 1253	n:4170000
Cons ci ratio: 6.677873e-02	ci left: 7.980832e-04	ci right 8.534531e-04	k: 3442	n:4170000
KS ci ratio: 9.323109e-03	ci left: 4.048112e-02	ci right 4.086053e-02	k: 169596	n:4170000
SYTL1   4170000 perm   8561 sec   (487 perm/sec)   p_kst 4.067050e-02   p_cons 8.254197e-04   p_joint 3.004796e-04

Joint ci ratio: 1.105486e-01	ci left: 2.840910e-04	ci right 3.175646e-04	k: 1256	n:4180000
Cons ci ratio: 6.670128e-02	ci left: 7.980558e-04	ci right 8.533571e-04	k: 3450	n:4180000
KS ci ratio: 9.311143e-03	ci left: 4.048810e-02	ci right 4.086708e-02	k: 170031	n:4180000
SYTL1   4180000 perm   8600 sec   (486 perm/sec)   p_kst 4.067727e-02   p_cons 8.253589e-04   p_joint 3.004785e-04

Joint ci ratio: 1.104169e-01	ci left: 2.841092e-04	ci right 3.175424e-04	k: 1259	n:4190000
Cons ci ratio: 6.663375e-02	ci left: 7.977940e-04	ci right 8.530190e-04	k: 3457	n:4190000
KS ci ratio: 9.300474e-03	ci left: 4.048457e-02	ci right 4.086308e-02	k: 170422	n:4190000
SYTL1   4190000 perm   8639 sec   (485 perm/sec)   p_kst 4.067351e-02   p_cons 8.250597e-04   p_joint 3.004773e-04

Joint ci ratio: 1.101549e-01	ci left: 2.848219e-04	ci right 3.182543e-04	k: 1265	n:4200000
Cons ci ratio: 6.651840e-02	ci left: 7.987040e-04	ci right 8.538926e-04	k: 3469	n:4200000
KS ci ratio: 9.289105e-03	ci left: 4.048723e-02	ci right 4.086531e-02	k: 170839	n:4200000
SYTL1   4200000 perm   8678 sec   (484 perm/sec)   p_kst 4.067595e-02   p_cons 8.259524e-04   p_joint 3.011905e-04

Joint ci ratio: 1.101114e-01	ci left: 2.843763e-04	ci right 3.177424e-04	k: 1266	n:4210000
Cons ci ratio: 6.645142e-02	ci left: 7.984420e-04	ci right 8.535547e-04	k: 3476	n:4210000
KS ci ratio: 9.278539e-03	ci left: 4.048348e-02	ci right 4.086109e-02	k: 171229	n:4210000
SYTL1   4210000 perm   8718 sec   (483 perm/sec)   p_kst 4.067197e-02   p_cons 8.256532e-04   p_joint 3.007126e-04

Joint ci ratio: 1.100246e-01	ci left: 2.841633e-04	ci right 3.174765e-04	k: 1268	n:4220000
Cons ci ratio: 6.636558e-02	ci left: 7.986472e-04	ci right 8.537002e-04	k: 3485	n:4220000
KS ci ratio: 9.267841e-03	ci left: 4.048117e-02	ci right 4.085832e-02	k: 171625	n:4220000
SYTL1   4220000 perm   8758 sec   (482 perm/sec)   p_kst 4.066943e-02   p_cons 8.258294e-04   p_joint 3.004739e-04

Joint ci ratio: 1.098948e-01	ci left: 2.841813e-04	ci right 3.174547e-04	k: 1271	n:4230000
Cons ci ratio: 6.628956e-02	ci left: 7.986190e-04	ci right 8.536046e-04	k: 3493	n:4230000
KS ci ratio: 9.256759e-03	ci left: 4.048241e-02	ci right 4.085912e-02	k: 172036	n:4230000
SYTL1   4230000 perm   8799 sec   (481 perm/sec)   p_kst 4.067045e-02   p_cons 8.257683e-04   p_joint 3.004728e-04

Joint ci ratio: 1.097224e-01	ci left: 2.844285e-04	ci right 3.176752e-04	k: 1275	n:4240000
Cons ci ratio: 6.616654e-02	ci left: 7.997508e-04	ci right 8.547082e-04	k: 3506	n:4240000
KS ci ratio: 9.245856e-03	ci left: 4.048247e-02	ci right 4.085873e-02	k: 172442	n:4240000
SYTL1   4240000 perm   8839 sec   (480 perm/sec)   p_kst 4.067028e-02   p_cons 8.268868e-04   p_joint 3.007075e-04

Joint ci ratio: 1.096795e-01	ci left: 2.839881e-04	ci right 3.171695e-04	k: 1276	n:4250000
Cons ci ratio: 6.609121e-02	ci left: 7.997202e-04	ci right 8.546106e-04	k: 3514	n:4250000
KS ci ratio: 9.235827e-03	ci left: 4.047548e-02	ci right 4.085127e-02	k: 172818	n:4250000
SYTL1   4250000 perm   8879 sec   (479 perm/sec)   p_kst 4.066306e-02   p_cons 8.268235e-04   p_joint 3.002353e-04

Joint ci ratio: 1.096795e-01	ci left: 2.833215e-04	ci right 3.164250e-04	k: 1276	n:4260000
Cons ci ratio: 6.605367e-02	ci left: 7.987664e-04	ci right 8.535589e-04	k: 3518	n:4260000
KS ci ratio: 9.225387e-03	ci left: 4.047227e-02	ci right 4.084760e-02	k: 173210	n:4260000
SYTL1   4260000 perm   8919 sec   (478 perm/sec)   p_kst 4.065962e-02   p_cons 8.258216e-04   p_joint 2.995305e-04

Joint ci ratio: 1.095937e-01	ci left: 2.831135e-04	ci right 3.161652e-04	k: 1278	n:4270000
Cons ci ratio: 6.600682e-02	ci left: 7.980474e-04	ci right 8.527503e-04	k: 3523	n:4270000
KS ci ratio: 9.215231e-03	ci left: 4.046698e-02	ci right 4.084184e-02	k: 173593	n:4270000
SYTL1   4270000 perm   8959 sec   (477 perm/sec)   p_kst 4.065410e-02   p_cons 8.250585e-04   p_joint 2.992974e-04

Joint ci ratio: 1.093801e-01	ci left: 2.835882e-04	ci right 3.166267e-04	k: 1283	n:4280000
Cons ci ratio: 6.589469e-02	ci left: 7.989403e-04	ci right 8.536078e-04	k: 3535	n:4280000
KS ci ratio: 9.204226e-03	ci left: 4.046917e-02	ci right 4.084360e-02	k: 174008	n:4280000
SYTL1   4280000 perm   8999 sec   (476 perm/sec)   p_kst 4.065607e-02   p_cons 8.259346e-04   p_joint 2.997664e-04

Joint ci ratio: 1.092950e-01	ci left: 2.833806e-04	ci right 3.163676e-04	k: 1285	n:4290000
Cons ci ratio: 6.581098e-02	ci left: 7.991413e-04	ci right 8.537505e-04	k: 3544	n:4290000
KS ci ratio: 9.193618e-03	ci left: 4.046832e-02	ci right 4.084232e-02	k: 174410	n:4290000
SYTL1   4290000 perm   9038 sec   (475 perm/sec)   p_kst 4.065501e-02   p_cons 8.261072e-04   p_joint 2.995338e-04

Joint ci ratio: 1.092102e-01	ci left: 2.831740e-04	ci right 3.161096e-04	k: 1287	n:4300000
Cons ci ratio: 6.573685e-02	ci left: 7.991127e-04	ci right 8.536561e-04	k: 3552	n:4300000
KS ci ratio: 9.183758e-03	ci left: 4.046145e-02	ci right 4.083498e-02	k: 174786	n:4300000
SYTL1   4300000 perm   9079 sec   (474 perm/sec)   p_kst 4.064791e-02   p_cons 8.260465e-04   p_joint 2.993023e-04

Joint ci ratio: 1.089988e-01	ci left: 2.836454e-04	ci right 3.165679e-04	k: 1292	n:4310000
Cons ci ratio: 6.565375e-02	ci left: 7.993125e-04	ci right 8.537979e-04	k: 3561	n:4310000
KS ci ratio: 9.172128e-03	ci left: 4.046989e-02	ci right 4.084302e-02	k: 175228	n:4310000
SYTL1   4310000 perm   9119 sec   (473 perm/sec)   p_kst 4.065615e-02   p_cons 8.262181e-04   p_joint 2.997680e-04

Joint ci ratio: 1.088725e-01	ci left: 2.836644e-04	ci right 3.165485e-04	k: 1295	n:4320000
Cons ci ratio: 6.553423e-02	ci left: 8.004222e-04	ci right 8.548801e-04	k: 3574	n:4320000
KS ci ratio: 9.161930e-03	ci left: 4.046651e-02	ci right 4.083920e-02	k: 175619	n:4320000
SYTL1   4320000 perm   9159 sec   (472 perm/sec)   p_kst 4.065255e-02   p_cons 8.273148e-04   p_joint 2.997685e-04

Joint ci ratio: 1.087886e-01	ci left: 2.834586e-04	ci right 3.162919e-04	k: 1297	n:4330000
Cons ci ratio: 6.546103e-02	ci left: 8.003909e-04	ci right 8.547836e-04	k: 3582	n:4330000
KS ci ratio: 9.150870e-03	ci left: 4.047075e-02	ci right 4.084302e-02	k: 176043	n:4330000
SYTL1   4330000 perm   9199 sec   (471 perm/sec)   p_kst 4.065658e-02   p_cons 8.272517e-04   p_joint 2.995381e-04

Joint ci ratio: 1.086631e-01	ci left: 2.834779e-04	ci right 3.162732e-04	k: 1300	n:4340000
Cons ci ratio: 6.537897e-02	ci left: 8.005865e-04	ci right 8.549217e-04	k: 3591	n:4340000
KS ci ratio: 9.139986e-03	ci left: 4.047383e-02	ci right 4.084568e-02	k: 176462	n:4340000
SYTL1   4340000 perm   9240 sec   (470 perm/sec)   p_kst 4.065945e-02   p_cons 8.274194e-04   p_joint 2.995392e-04

Joint ci ratio: 1.085797e-01	ci left: 2.832735e-04	ci right 3.160184e-04	k: 1302	n:4350000
Cons ci ratio: 6.526094e-02	ci left: 8.016858e-04	ci right 8.559937e-04	k: 3604	n:4350000
KS ci ratio: 9.130109e-03	ci left: 4.046863e-02	ci right 4.084003e-02	k: 176845	n:4350000
SYTL1   4350000 perm   9281 sec   (469 perm/sec)   p_kst 4.065402e-02   p_cons 8.285057e-04   p_joint 2.993103e-04

Joint ci ratio: 1.084134e-01	ci left: 2.835163e-04	ci right 3.162359e-04	k: 1306	n:4360000
Cons ci ratio: 6.519769e-02	ci left: 8.014264e-04	ci right 8.556621e-04	k: 3611	n:4360000
KS ci ratio: 9.119138e-03	ci left: 4.047307e-02	ci right 4.084406e-02	k: 177270	n:4360000
SYTL1   4360000 perm   9322 sec   (468 perm/sec)   p_kst 4.065826e-02   p_cons 8.282110e-04   p_joint 2.995413e-04

Joint ci ratio: 1.082892e-01	ci left: 2.835355e-04	ci right 3.162173e-04	k: 1309	n:4370000
Cons ci ratio: 6.511661e-02	ci left: 8.016184e-04	ci right 8.557971e-04	k: 3620	n:4370000
KS ci ratio: 9.108233e-03	ci left: 4.047725e-02	ci right 4.084784e-02	k: 177694	n:4370000
SYTL1   4370000 perm   9362 sec   (467 perm/sec)   p_kst 4.066224e-02   p_cons 8.283753e-04   p_joint 2.995423e-04

Joint ci ratio: 1.082479e-01	ci left: 2.831102e-04	ci right 3.157298e-04	k: 1310	n:4380000
Cons ci ratio: 6.508070e-02	ci left: 8.006866e-04	ci right 8.547713e-04	k: 3624	n:4380000
KS ci ratio: 9.098086e-03	ci left: 4.047527e-02	ci right 4.084543e-02	k: 178091	n:4380000
SYTL1   4380000 perm   9404 sec   (466 perm/sec)   p_kst 4.066005e-02   p_cons 8.273973e-04   p_joint 2.990868e-04

Joint ci ratio: 1.080421e-01	ci left: 2.835735e-04	ci right 3.161804e-04	k: 1315	n:4390000
Cons ci ratio: 6.498216e-02	ci left: 8.013277e-04	ci right 8.553707e-04	k: 3635	n:4390000
KS ci ratio: 9.087893e-03	ci left: 4.047398e-02	ci right 4.084371e-02	k: 178491	n:4390000
SYTL1   4390000 perm   9445 sec   (465 perm/sec)   p_kst 4.065854e-02   p_cons 8.280182e-04   p_joint 2.995444e-04

Joint ci ratio: 1.078374e-01	ci left: 2.840347e-04	ci right 3.166288e-04	k: 1320	n:4400000
Cons ci ratio: 6.487517e-02	ci left: 8.021895e-04	ci right 8.561982e-04	k: 3647	n:4400000
KS ci ratio: 9.077470e-03	ci left: 4.047497e-02	ci right 4.084427e-02	k: 178901	n:4400000
SYTL1   4400000 perm   9486 sec   (464 perm/sec)   p_kst 4.065932e-02   p_cons 8.288636e-04   p_joint 3.000000e-04

Joint ci ratio: 1.075123e-01	ci left: 2.851558e-04	ci right 3.177737e-04	k: 1328	n:4410000
Cons ci ratio: 6.478642e-02	ci left: 8.026013e-04	ci right 8.565610e-04	k: 3657	n:4410000
KS ci ratio: 9.067188e-03	ci left: 4.047504e-02	ci right 4.084393e-02	k: 179307	n:4410000
SYTL1   4410000 perm   9527 sec   (463 perm/sec)   p_kst 4.065918e-02   p_cons 8.292517e-04   p_joint 3.011338e-04

Joint ci ratio: 1.073508e-01	ci left: 2.853914e-04	ci right 3.179841e-04	k: 1332	n:4420000
Cons ci ratio: 6.472453e-02	ci left: 8.023435e-04	ci right 8.562324e-04	k: 3664	n:4420000
KS ci ratio: 9.056599e-03	ci left: 4.047805e-02	ci right 4.084653e-02	k: 179726	n:4420000
SYTL1   4420000 perm   9569 sec   (462 perm/sec)   p_kst 4.066199e-02   p_cons 8.289593e-04   p_joint 3.013575e-04

Joint ci ratio: 1.072302e-01	ci left: 2.854062e-04	ci right 3.179616e-04	k: 1335	n:4430000
Cons ci ratio: 6.464520e-02	ci left: 8.025311e-04	ci right 8.563641e-04	k: 3673	n:4430000
KS ci ratio: 9.046990e-03	ci left: 4.047294e-02	ci right 4.084098e-02	k: 180109	n:4430000
SYTL1   4430000 perm   9610 sec   (461 perm/sec)   p_kst 4.065666e-02   p_cons 8.291196e-04   p_joint 3.013544e-04

Joint ci ratio: 1.070301e-01	ci left: 2.858593e-04	ci right 3.184018e-04	k: 1340	n:4440000
Cons ci ratio: 6.459249e-02	ci left: 8.020531e-04	ci right 8.558085e-04	k: 3679	n:4440000
KS ci ratio: 9.037463e-03	ci left: 4.046740e-02	ci right 4.083500e-02	k: 180490	n:4440000
SYTL1   4440000 perm   9651 sec   (460 perm/sec)   p_kst 4.065090e-02   p_cons 8.286036e-04   p_joint 3.018018e-04

Joint ci ratio: 1.069903e-01	ci left: 2.854356e-04	ci right 3.179170e-04	k: 1341	n:4450000
Cons ci ratio: 6.454868e-02	ci left: 8.013562e-04	ci right 8.550271e-04	k: 3684	n:4450000
KS ci ratio: 9.026822e-03	ci left: 4.047175e-02	ci right 4.083896e-02	k: 180915	n:4450000
SYTL1   4450000 perm   9693 sec   (459 perm/sec)   p_kst 4.065506e-02   p_cons 8.278652e-04   p_joint 3.013483e-04

Joint ci ratio: 1.068312e-01	ci left: 2.856685e-04	ci right 3.181250e-04	k: 1345	n:4460000
Cons ci ratio: 6.447873e-02	ci left: 8.013242e-04	ci right 8.549327e-04	k: 3692	n:4460000
KS ci ratio: 9.017022e-03	ci left: 4.046915e-02	ci right 4.083593e-02	k: 181309	n:4460000
SYTL1   4460000 perm   9734 sec   (458 perm/sec)   p_kst 4.065224e-02   p_cons 8.278027e-04   p_joint 3.015695e-04

Joint ci ratio: 1.066333e-01	ci left: 2.861182e-04	ci right 3.185617e-04	k: 1350	n:4470000
Cons ci ratio: 6.434813e-02	ci left: 8.028332e-04	ci right 8.564298e-04	k: 3707	n:4470000
KS ci ratio: 9.006556e-03	ci left: 4.047259e-02	ci right 4.083897e-02	k: 181730	n:4470000
SYTL1   4470000 perm   9777 sec   (457 perm/sec)   p_kst 4.065548e-02   p_cons 8.293065e-04   p_joint 3.020134e-04

Joint ci ratio: 1.064757e-01	ci left: 2.863486e-04	ci right 3.187673e-04	k: 1354	n:4480000
Cons ci ratio: 6.425288e-02	ci left: 8.034571e-04	ci right 8.570129e-04	k: 3718	n:4480000
KS ci ratio: 8.995664e-03	ci left: 4.048002e-02	ci right 4.084602e-02	k: 182169	n:4480000
SYTL1   4480000 perm   9819 sec   (456 perm/sec)   p_kst 4.066272e-02   p_cons 8.299107e-04   p_joint 3.022321e-04

Joint ci ratio: 1.063973e-01	ci left: 2.861444e-04	ci right 3.185146e-04	k: 1356	n:4490000
Cons ci ratio: 6.420975e-02	ci left: 8.027633e-04	ci right 8.562357e-04	k: 3723	n:4490000
KS ci ratio: 8.986503e-03	ci left: 4.047275e-02	ci right 4.083831e-02	k: 182542	n:4490000
SYTL1   4490000 perm   9862 sec   (455 perm/sec)   p_kst 4.065523e-02   p_cons 8.291759e-04   p_joint 3.020045e-04

Joint ci ratio: 1.063581e-01	ci left: 2.857248e-04	ci right 3.180350e-04	k: 1357	n:4500000
Cons ci ratio: 6.415811e-02	ci left: 8.022913e-04	ci right 8.556877e-04	k: 3729	n:4500000
KS ci ratio: 8.976629e-03	ci left: 4.047194e-02	ci right 4.083710e-02	k: 182944	n:4500000
SYTL1   4500000 perm   9904 sec   (454 perm/sec)   p_kst 4.065422e-02   p_cons 8.286667e-04   p_joint 3.015556e-04

Joint ci ratio: 1.062018e-01	ci left: 2.859546e-04	ci right 3.182403e-04	k: 1361	n:4510000
Cons ci ratio: 6.406369e-02	ci left: 8.029123e-04	ci right 8.562685e-04	k: 3740	n:4510000
KS ci ratio: 8.966482e-03	ci left: 4.047379e-02	ci right 4.083855e-02	k: 183358	n:4510000
SYTL1   4510000 perm   9947 sec   (453 perm/sec)   p_kst 4.065588e-02   p_cons 8.292683e-04   p_joint 3.017738e-04

Joint ci ratio: 1.060462e-01	ci left: 2.861835e-04	ci right 3.184446e-04	k: 1365	n:4520000
Cons ci ratio: 6.396116e-02	ci left: 8.037484e-04	ci right 8.570714e-04	k: 3752	n:4520000
KS ci ratio: 8.956267e-03	ci left: 4.047652e-02	ci right 4.084088e-02	k: 183776	n:4520000
SYTL1   4520000 perm   9989 sec   (453 perm/sec)   p_kst 4.065841e-02   p_cons 8.300885e-04   p_joint 3.019912e-04

Joint ci ratio: 1.059299e-01	ci left: 2.861964e-04	ci right 3.184215e-04	k: 1368	n:4530000
Cons ci ratio: 6.390161e-02	ci left: 8.034946e-04	ci right 8.567494e-04	k: 3759	n:4530000
KS ci ratio: 8.946669e-03	ci left: 4.047417e-02	ci right 4.083812e-02	k: 184171	n:4530000
SYTL1   4530000 perm   10031 sec   (452 perm/sec)   p_kst 4.065585e-02   p_cons 8.298013e-04   p_joint 3.019868e-04

Joint ci ratio: 1.057755e-01	ci left: 2.864237e-04	ci right 3.186245e-04	k: 1372	n:4540000
Cons ci ratio: 6.379985e-02	ci left: 8.043258e-04	ci right 8.575476e-04	k: 3771	n:4540000
KS ci ratio: 8.936901e-03	ci left: 4.047359e-02	ci right 4.083713e-02	k: 184574	n:4540000
SYTL1   4540000 perm   10073 sec   (451 perm/sec)   p_kst 4.065507e-02   p_cons 8.306167e-04   p_joint 3.022026e-04

Joint ci ratio: 1.057370e-01	ci left: 2.860082e-04	ci right 3.181498e-04	k: 1373	n:4550000
Cons ci ratio: 6.373231e-02	ci left: 8.042883e-04	ci right 8.574492e-04	k: 3779	n:4550000
KS ci ratio: 8.926359e-03	ci left: 4.048003e-02	ci right 4.084320e-02	k: 185009	n:4550000
SYTL1   4550000 perm   10116 sec   (450 perm/sec)   p_kst 4.066132e-02   p_cons 8.305495e-04   p_joint 3.017582e-04

Joint ci ratio: 1.056986e-01	ci left: 2.855945e-04	ci right 3.176772e-04	k: 1374	n:4560000
Cons ci ratio: 6.365657e-02	ci left: 8.044667e-04	ci right 8.575739e-04	k: 3788	n:4560000
KS ci ratio: 8.916481e-03	ci left: 4.048096e-02	ci right 4.084374e-02	k: 185419	n:4560000
SYTL1   4560000 perm   10159 sec   (449 perm/sec)   p_kst 4.066206e-02   p_cons 8.307018e-04   p_joint 3.013158e-04

Joint ci ratio: 1.056218e-01	ci left: 2.853956e-04	ci right 3.174313e-04	k: 1376	n:4570000
Cons ci ratio: 6.354761e-02	ci left: 8.055058e-04	ci right 8.585872e-04	k: 3801	n:4570000
KS ci ratio: 8.907410e-03	ci left: 4.047513e-02	ci right 4.083749e-02	k: 185798	n:4570000
SYTL1   4570000 perm   10202 sec   (448 perm/sec)   p_kst 4.065602e-02   p_cons 8.317287e-04   p_joint 3.010941e-04

Joint ci ratio: 1.055835e-01	ci left: 2.849851e-04	ci right 3.169623e-04	k: 1377	n:4580000
Cons ci ratio: 6.349754e-02	ci left: 8.050363e-04	ci right 8.580435e-04	k: 3807	n:4580000
KS ci ratio: 8.897994e-03	ci left: 4.047259e-02	ci right 4.083454e-02	k: 186192	n:4580000
SYTL1   4580000 perm   10245 sec   (447 perm/sec)   p_kst 4.065328e-02   p_cons 8.312227e-04   p_joint 3.006550e-04

Joint ci ratio: 1.054306e-01	ci left: 2.852126e-04	ci right 3.171662e-04	k: 1381	n:4590000
Cons ci ratio: 6.344760e-02	ci left: 8.045689e-04	ci right 8.575020e-04	k: 3813	n:4590000
KS ci ratio: 8.888756e-03	ci left: 4.046876e-02	ci right 4.083029e-02	k: 186580	n:4590000
SYTL1   4590000 perm   10288 sec   (446 perm/sec)   p_kst 4.064924e-02   p_cons 8.307190e-04   p_joint 3.008715e-04

Joint ci ratio: 1.053163e-01	ci left: 2.852276e-04	ci right 3.171460e-04	k: 1384	n:4600000
Cons ci ratio: 6.337286e-02	ci left: 8.047453e-04	ci right 8.576254e-04	k: 3822	n:4600000
KS ci ratio: 8.878903e-03	ci left: 4.047059e-02	ci right 4.083173e-02	k: 186994	n:4600000
SYTL1   4600000 perm   10331 sec   (445 perm/sec)   p_kst 4.065087e-02   p_cons 8.308696e-04   p_joint 3.008696e-04

Joint ci ratio: 1.052784e-01	ci left: 2.848201e-04	ci right 3.166807e-04	k: 1385	n:4610000
Cons ci ratio: 6.330666e-02	ci left: 8.047075e-04	ci right 8.575279e-04	k: 3830	n:4610000
KS ci ratio: 8.869034e-03	ci left: 4.047284e-02	ci right 4.083360e-02	k: 187410	n:4610000
SYTL1   4610000 perm   10375 sec   (444 perm/sec)   p_kst 4.065293e-02   p_cons 8.308026e-04   p_joint 3.004338e-04

Joint ci ratio: 1.051646e-01	ci left: 2.848359e-04	ci right 3.166617e-04	k: 1388	n:4620000
Cons ci ratio: 6.322419e-02	ci left: 8.050960e-04	ci right 8.578705e-04	k: 3840	n:4620000
KS ci ratio: 8.859001e-03	ci left: 4.047680e-02	ci right 4.083719e-02	k: 187834	n:4620000
SYTL1   4620000 perm   10418 sec   (443 perm/sec)   p_kst 4.065671e-02   p_cons 8.311688e-04   p_joint 3.004329e-04

Joint ci ratio: 1.051268e-01	ci left: 2.844310e-04	ci right 3.161994e-04	k: 1389	n:4630000
Cons ci ratio: 6.315024e-02	ci left: 8.052703e-04	ci right 8.579922e-04	k: 3849	n:4630000
KS ci ratio: 8.848977e-03	ci left: 4.048097e-02	ci right 4.084099e-02	k: 188259	n:4630000
SYTL1   4630000 perm   10461 sec   (443 perm/sec)   p_kst 4.066069e-02   p_cons 8.313175e-04   p_joint 3.000000e-04

Joint ci ratio: 1.050135e-01	ci left: 2.844475e-04	ci right 3.161815e-04	k: 1392	n:4640000
Cons ci ratio: 6.307655e-02	ci left: 8.054438e-04	ci right 8.581133e-04	k: 3858	n:4640000
KS ci ratio: 8.839183e-03	ci left: 4.048340e-02	ci right 4.084304e-02	k: 188676	n:4640000
SYTL1   4640000 perm   10504 sec   (442 perm/sec)   p_kst 4.066293e-02   p_cons 8.314655e-04   p_joint 3.000000e-04

Joint ci ratio: 1.049382e-01	ci left: 2.842546e-04	ci right 3.159429e-04	k: 1394	n:4650000
Cons ci ratio: 6.300312e-02	ci left: 8.056167e-04	ci right 8.582339e-04	k: 3867	n:4650000
KS ci ratio: 8.830029e-03	ci left: 4.048045e-02	ci right 4.083969e-02	k: 189068	n:4650000
SYTL1   4650000 perm   10548 sec   (441 perm/sec)   p_kst 4.065978e-02   p_cons 8.316129e-04   p_joint 2.997849e-04

Joint ci ratio: 1.049007e-01	ci left: 2.838536e-04	ci right 3.154852e-04	k: 1395	n:4660000
Cons ci ratio: 6.292995e-02	ci left: 8.057888e-04	ci right 8.583540e-04	k: 3876	n:4660000
KS ci ratio: 8.820346e-03	ci left: 4.048244e-02	ci right 4.084130e-02	k: 189483	n:4660000
SYTL1   4660000 perm   10591 sec   (440 perm/sec)   p_kst 4.066159e-02   p_cons 8.317597e-04   p_joint 2.993562e-04

Joint ci ratio: 1.047507e-01	ci left: 2.840798e-04	ci right 3.156886e-04	k: 1399	n:4670000
Cons ci ratio: 6.286513e-02	ci left: 8.057495e-04	ci right 8.582559e-04	k: 3884	n:4670000
KS ci ratio: 8.810501e-03	ci left: 4.048614e-02	ci right 4.084463e-02	k: 189906	n:4670000
SYTL1   4670000 perm   10636 sec   (439 perm/sec)   p_kst 4.066510e-02   p_cons 8.316916e-04   p_joint 2.995717e-04

Joint ci ratio: 1.046760e-01	ci left: 2.838890e-04	ci right 3.154526e-04	k: 1401	n:4680000
Cons ci ratio: 6.280050e-02	ci left: 8.057103e-04	ci right 8.581583e-04	k: 3892	n:4680000
KS ci ratio: 8.800641e-03	ci left: 4.049024e-02	ci right 4.084836e-02	k: 190331	n:4680000
SYTL1   4680000 perm   10680 sec   (438 perm/sec)   p_kst 4.066902e-02   p_cons 8.316239e-04   p_joint 2.993590e-04

Joint ci ratio: 1.045641e-01	ci left: 2.839066e-04	ci right 3.154364e-04	k: 1404	n:4690000
Cons ci ratio: 6.271195e-02	ci left: 8.063010e-04	ci right 8.587108e-04	k: 3903	n:4690000
KS ci ratio: 8.791679e-03	ci left: 4.048667e-02	ci right 4.084439e-02	k: 190720	n:4690000
SYTL1   4690000 perm   10723 sec   (437 perm/sec)   p_kst 4.066525e-02   p_cons 8.321962e-04   p_joint 2.993603e-04

Joint ci ratio: 1.043786e-01	ci left: 2.843386e-04	ci right 3.158568e-04	k: 1409	n:4700000
Cons ci ratio: 6.261576e-02	ci left: 8.070987e-04	ci right 8.594769e-04	k: 3915	n:4700000
KS ci ratio: 8.782648e-03	ci left: 4.048396e-02	ci right 4.084129e-02	k: 191113	n:4700000
SYTL1   4700000 perm   10767 sec   (437 perm/sec)   p_kst 4.066234e-02   p_cons 8.329787e-04   p_joint 2.997872e-04

Joint ci ratio: 1.043046e-01	ci left: 2.841484e-04	ci right 3.156219e-04	k: 1411	n:4710000
Cons ci ratio: 6.252799e-02	ci left: 8.076840e-04	ci right 8.600241e-04	k: 3926	n:4710000
KS ci ratio: 8.773573e-03	ci left: 4.048190e-02	ci right 4.083884e-02	k: 191509	n:4710000
SYTL1   4710000 perm   10811 sec   (436 perm/sec)   p_kst 4.066008e-02   p_cons 8.335456e-04   p_joint 2.995754e-04

Joint ci ratio: 1.041572e-01	ci left: 2.843718e-04	ci right 3.158228e-04	k: 1415	n:4720000
Cons ci ratio: 6.248029e-02	ci left: 8.072241e-04	ci right 8.594930e-04	k: 3932	n:4720000
KS ci ratio: 8.764503e-03	ci left: 4.048006e-02	ci right 4.083661e-02	k: 191906	n:4720000
SYTL1   4720000 perm   10856 sec   (435 perm/sec)   p_kst 4.065805e-02   p_cons 8.330508e-04   p_joint 2.997881e-04

Joint ci ratio: 1.040837e-01	ci left: 2.841824e-04	ci right 3.155889e-04	k: 1417	n:4730000
Cons ci ratio: 6.240892e-02	ci left: 8.073906e-04	ci right 8.596084e-04	k: 3941	n:4730000
KS ci ratio: 8.755010e-03	ci left: 4.048223e-02	ci right 4.083842e-02	k: 192322	n:4730000
SYTL1   4730000 perm   10902 sec   (434 perm/sec)   p_kst 4.066004e-02   p_cons 8.331924e-04   p_joint 2.995772e-04

Joint ci ratio: 1.039372e-01	ci left: 2.844048e-04	ci right 3.157890e-04	k: 1421	n:4740000
Cons ci ratio: 6.234569e-02	ci left: 8.073486e-04	ci right 8.595090e-04	k: 3949	n:4740000
KS ci ratio: 8.745666e-03	ci left: 4.048334e-02	ci right 4.083916e-02	k: 192733	n:4740000
SYTL1   4740000 perm   10946 sec   (433 perm/sec)   p_kst 4.066097e-02   p_cons 8.331224e-04   p_joint 2.997890e-04

Joint ci ratio: 1.038642e-01	ci left: 2.842162e-04	ci right 3.155561e-04	k: 1423	n:4750000
Cons ci ratio: 6.225904e-02	ci left: 8.079287e-04	ci right 8.600513e-04	k: 3960	n:4750000
KS ci ratio: 8.735715e-03	ci left: 4.049013e-02	ci right 4.084559e-02	k: 193171	n:4750000
SYTL1   4750000 perm   10991 sec   (432 perm/sec)   p_kst 4.066758e-02   p_cons 8.336842e-04   p_joint 2.995789e-04

Joint ci ratio: 1.036461e-01	ci left: 2.848469e-04	ci right 3.161864e-04	k: 1429	n:4760000
Cons ci ratio: 6.218843e-02	ci left: 8.080927e-04	ci right 8.601646e-04	k: 3969	n:4760000
KS ci ratio: 8.726691e-03	ci left: 4.048891e-02	ci right 4.084400e-02	k: 193571	n:4760000
SYTL1   4760000 perm   11035 sec   (431 perm/sec)   p_kst 4.066618e-02   p_cons 8.338235e-04   p_joint 3.002101e-04

Joint ci ratio: 1.035375e-01	ci left: 2.848624e-04	ci right 3.161687e-04	k: 1432	n:4770000
Cons ci ratio: 6.214150e-02	ci left: 8.076369e-04	ci right 8.596388e-04	k: 3975	n:4770000
KS ci ratio: 8.717484e-03	ci left: 4.048959e-02	ci right 4.084430e-02	k: 193980	n:4770000
SYTL1   4770000 perm   11081 sec   (430 perm/sec)   p_kst 4.066667e-02   p_cons 8.333333e-04   p_joint 3.002096e-04

Joint ci ratio: 1.033933e-01	ci left: 2.850816e-04	ci right 3.163658e-04	k: 1436	n:4780000
Cons ci ratio: 6.207908e-02	ci left: 8.075949e-04	ci right 8.595400e-04	k: 3983	n:4780000
KS ci ratio: 8.707932e-03	ci left: 4.049360e-02	ci right 4.084796e-02	k: 194405	n:4780000
SYTL1   4780000 perm   11126 sec   (430 perm/sec)   p_kst 4.067050e-02   p_cons 8.332636e-04   p_joint 3.004184e-04

Joint ci ratio: 1.033214e-01	ci left: 2.848932e-04	ci right 3.161336e-04	k: 1438	n:4790000
Cons ci ratio: 6.201685e-02	ci left: 8.075532e-04	ci right 8.594416e-04	k: 3991	n:4790000
KS ci ratio: 8.699413e-03	ci left: 4.048864e-02	ci right 4.084261e-02	k: 194787	n:4790000
SYTL1   4790000 perm   11171 sec   (429 perm/sec)   p_kst 4.066534e-02   p_cons 8.331942e-04   p_joint 3.002088e-04

Joint ci ratio: 1.032497e-01	ci left: 2.847055e-04	ci right 3.159024e-04	k: 1440	n:4800000
Cons ci ratio: 6.196256e-02	ci left: 8.073065e-04	ci right 8.591320e-04	k: 3998	n:4800000
KS ci ratio: 8.689387e-03	ci left: 4.049742e-02	ci right 4.085105e-02	k: 195235	n:4800000
SYTL1   4800000 perm   11217 sec   (428 perm/sec)   p_kst 4.067396e-02   p_cons 8.329167e-04   p_joint 3.000000e-04

Joint ci ratio: 1.031424e-01	ci left: 2.847212e-04	ci right 3.158855e-04	k: 1443	n:4810000
Cons ci ratio: 6.188522e-02	ci left: 8.076749e-04	ci right 8.594571e-04	k: 4008	n:4810000
KS ci ratio: 8.680159e-03	ci left: 4.049932e-02	ci right 4.085259e-02	k: 195650	n:4810000
SYTL1   4810000 perm   11263 sec   (427 perm/sec)   p_kst 4.067568e-02   p_cons 8.332640e-04   p_joint 3.000000e-04

Joint ci ratio: 1.029998e-01	ci left: 2.849390e-04	ci right 3.160814e-04	k: 1447	n:4820000
Cons ci ratio: 6.177741e-02	ci left: 8.088589e-04	ci right 8.606234e-04	k: 4022	n:4820000
KS ci ratio: 8.671098e-03	ci left: 4.049996e-02	ci right 4.085287e-02	k: 196059	n:4820000
SYTL1   4820000 perm   11308 sec   (426 perm/sec)   p_kst 4.067614e-02   p_cons 8.344398e-04   p_joint 3.002075e-04

Joint ci ratio: 1.028578e-01	ci left: 2.851559e-04	ci right 3.162764e-04	k: 1451	n:4830000
Cons ci ratio: 6.171608e-02	ci left: 8.088150e-04	ci right 8.605235e-04	k: 4030	n:4830000
KS ci ratio: 8.661147e-03	ci left: 4.050887e-02	ci right 4.086145e-02	k: 196508	n:4830000
SYTL1   4830000 perm   11356 sec   (425 perm/sec)   p_kst 4.068489e-02   p_cons 8.343685e-04   p_joint 3.004141e-04

Joint ci ratio: 1.027518e-01	ci left: 2.851706e-04	ci right 3.162587e-04	k: 1454	n:4840000
Cons ci ratio: 6.164729e-02	ci left: 8.089747e-04	ci right 8.606337e-04	k: 4039	n:4840000
KS ci ratio: 8.652123e-03	ci left: 4.050970e-02	ci right 4.086192e-02	k: 196918	n:4840000
SYTL1   4840000 perm   11403 sec   (424 perm/sec)   p_kst 4.068554e-02   p_cons 8.345041e-04   p_joint 3.004132e-04

Joint ci ratio: 1.025756e-01	ci left: 2.855871e-04	ci right 3.166640e-04	k: 1459	n:4850000
Cons ci ratio: 6.159396e-02	ci left: 8.087278e-04	ci right 8.603248e-04	k: 4046	n:4850000
KS ci ratio: 8.642236e-03	ci left: 4.051856e-02	ci right 4.087045e-02	k: 197367	n:4850000
SYTL1   4850000 perm   11448 sec   (424 perm/sec)   p_kst 4.069423e-02   p_cons 8.342268e-04   p_joint 3.008247e-04

Joint ci ratio: 1.024704e-01	ci left: 2.856010e-04	ci right 3.166456e-04	k: 1462	n:4860000
Cons ci ratio: 6.152558e-02	ci left: 8.088871e-04	ci right 8.604349e-04	k: 4055	n:4860000
KS ci ratio: 8.633885e-03	ci left: 4.051382e-02	ci right 4.086533e-02	k: 197750	n:4860000
SYTL1   4860000 perm   11494 sec   (423 perm/sec)   p_kst 4.068930e-02   p_cons 8.343621e-04   p_joint 3.008230e-04

Joint ci ratio: 1.023655e-01	ci left: 2.856147e-04	ci right 3.166272e-04	k: 1465	n:4870000
Cons ci ratio: 6.147257e-02	ci left: 8.086414e-04	ci right 8.601276e-04	k: 4062	n:4870000
KS ci ratio: 8.624220e-03	ci left: 4.052119e-02	ci right 4.087237e-02	k: 198192	n:4870000
SYTL1   4870000 perm   11540 sec   (422 perm/sec)   p_kst 4.069651e-02   p_cons 8.340862e-04   p_joint 3.008214e-04

Joint ci ratio: 1.023306e-01	ci left: 2.852291e-04	ci right 3.161885e-04	k: 1466	n:4880000
Cons ci ratio: 6.140459e-02	ci left: 8.088003e-04	ci right 8.602376e-04	k: 4071	n:4880000
KS ci ratio: 8.615220e-03	ci left: 4.052281e-02	ci right 4.087363e-02	k: 198606	n:4880000
SYTL1   4880000 perm   11586 sec   (421 perm/sec)   p_kst 4.069795e-02   p_cons 8.342213e-04   p_joint 3.004098e-04

Joint ci ratio: 1.023307e-01	ci left: 2.846458e-04	ci right 3.155419e-04	k: 1466	n:4890000
Cons ci ratio: 6.139710e-02	ci left: 8.073476e-04	ci right 8.586861e-04	k: 4072	n:4890000
KS ci ratio: 8.606497e-03	ci left: 4.052218e-02	ci right 4.087264e-02	k: 199009	n:4890000
SYTL1   4890000 perm   11632 sec   (420 perm/sec)   p_kst 4.069714e-02   p_cons 8.327198e-04   p_joint 2.997955e-04

Joint ci ratio: 1.020874e-01	ci left: 2.854570e-04	ci right 3.163630e-04	k: 1473	n:4900000
Cons ci ratio: 6.131435e-02	ci left: 8.079104e-04	ci right 8.592130e-04	k: 4083	n:4900000
KS ci ratio: 8.598788e-03	ci left: 4.051259e-02	ci right 4.086265e-02	k: 199368	n:4900000
SYTL1   4900000 perm   11678 sec   (420 perm/sec)   p_kst 4.068735e-02   p_cons 8.332653e-04   p_joint 3.006122e-04

Joint ci ratio: 1.019836e-01	ci left: 2.854710e-04	ci right 3.163453e-04	k: 1476	n:4910000
Cons ci ratio: 6.126937e-02	ci left: 8.074683e-04	ci right 8.587038e-04	k: 4089	n:4910000
KS ci ratio: 8.589554e-03	ci left: 4.051706e-02	ci right 4.086678e-02	k: 199796	n:4910000
SYTL1   4910000 perm   11725 sec   (419 perm/sec)   p_kst 4.069165e-02   p_cons 8.327902e-04   p_joint 3.006110e-04

Joint ci ratio: 1.019147e-01	ci left: 2.852869e-04	ci right 3.161192e-04	k: 1478	n:4920000
Cons ci ratio: 6.122449e-02	ci left: 8.070279e-04	ci right 8.581966e-04	k: 4095	n:4920000
KS ci ratio: 8.581377e-03	ci left: 4.051218e-02	ci right 4.086153e-02	k: 200178	n:4920000
SYTL1   4920000 perm   11772 sec   (418 perm/sec)   p_kst 4.068659e-02   p_cons 8.323171e-04   p_joint 3.004065e-04

Joint ci ratio: 1.017771e-01	ci left: 2.854989e-04	ci right 3.163100e-04	k: 1482	n:4930000
Cons ci ratio: 6.117971e-02	ci left: 8.065893e-04	ci right 8.576915e-04	k: 4101	n:4930000
KS ci ratio: 8.572355e-03	ci left: 4.051522e-02	ci right 4.086422e-02	k: 200599	n:4930000
SYTL1   4930000 perm   11818 sec   (417 perm/sec)   p_kst 4.068945e-02   p_cons 8.318458e-04   p_joint 3.006085e-04

Joint ci ratio: 1.017086e-01	ci left: 2.853156e-04	ci right 3.160848e-04	k: 1484	n:4940000
Cons ci ratio: 6.110527e-02	ci left: 8.069499e-04	ci right 8.580106e-04	k: 4111	n:4940000
KS ci ratio: 8.563738e-03	ci left: 4.051481e-02	ci right 4.086346e-02	k: 201003	n:4940000
SYTL1   4940000 perm   11865 sec   (416 perm/sec)   p_kst 4.068887e-02   p_cons 8.321862e-04   p_joint 3.004049e-04

Joint ci ratio: 1.016744e-01	ci left: 2.849361e-04	ci right 3.156534e-04	k: 1485	n:4950000
Cons ci ratio: 6.104591e-02	ci left: 8.069112e-04	ci right 8.579180e-04	k: 4119	n:4950000
KS ci ratio: 8.555457e-03	ci left: 4.051158e-02	ci right 4.085986e-02	k: 201393	n:4950000
SYTL1   4950000 perm   11912 sec   (416 perm/sec)   p_kst 4.068545e-02   p_cons 8.321212e-04   p_joint 3.000000e-04

Joint ci ratio: 1.015037e-01	ci left: 2.853440e-04	ci right 3.160507e-04	k: 1490	n:4960000
Cons ci ratio: 6.097934e-02	ci left: 8.070712e-04	ci right 8.580306e-04	k: 4128	n:4960000
KS ci ratio: 8.546318e-03	ci left: 4.051642e-02	ci right 4.086436e-02	k: 201823	n:4960000
SYTL1   4960000 perm   11959 sec   (415 perm/sec)   p_kst 4.069012e-02   p_cons 8.322581e-04   p_joint 3.004032e-04

Joint ci ratio: 1.013001e-01	ci left: 2.859465e-04	ci right 3.166526e-04	k: 1496	n:4970000
Cons ci ratio: 6.090562e-02	ci left: 8.074287e-04	ci right 8.583469e-04	k: 4138	n:4970000
KS ci ratio: 8.537911e-03	ci left: 4.051480e-02	ci right 4.086239e-02	k: 202221	n:4970000
SYTL1   4970000 perm   12006 sec   (414 perm/sec)   p_kst 4.068833e-02   p_cons 8.325956e-04   p_joint 3.010060e-04

Joint ci ratio: 1.011650e-01	ci left: 2.861552e-04	ci right 3.168403e-04	k: 1500	n:4980000
Cons ci ratio: 6.082484e-02	ci left: 8.079826e-04	ci right 8.588657e-04	k: 4149	n:4980000
KS ci ratio: 8.528916e-03	ci left: 4.051881e-02	ci right 4.086606e-02	k: 202647	n:4980000
SYTL1   4980000 perm   12052 sec   (413 perm/sec)   p_kst 4.069217e-02   p_cons 8.331325e-04   p_joint 3.012048e-04

Joint ci ratio: 1.010977e-01	ci left: 2.859724e-04	ci right 3.166163e-04	k: 1502	n:4990000
Cons ci ratio: 6.073706e-02	ci left: 8.087317e-04	ci right 8.595859e-04	k: 4161	n:4990000
KS ci ratio: 8.520298e-03	ci left: 4.051960e-02	ci right 4.086651e-02	k: 203057	n:4990000
SYTL1   4990000 perm   12099 sec   (412 perm/sec)   p_kst 4.069279e-02   p_cons 8.338677e-04   p_joint 3.010020e-04

Joint ci ratio: 1.010977e-01	ci left: 2.854005e-04	ci right 3.159831e-04	k: 1502	n:5000000
Cons ci ratio: 6.072251e-02	ci left: 8.075081e-04	ci right 8.582728e-04	k: 4163	n:5000000
KS ci ratio: 8.511685e-03	ci left: 4.052058e-02	ci right 4.086715e-02	k: 203468	n:5000000
SYTL1   5000000 perm   12148 sec   (412 perm/sec)   p_kst 4.069360e-02   p_cons 8.326000e-04   p_joint 3.004000e-04

Outputting figure to mutsig2_images.part000000000170/SYTL1.2_1709_5000000_0.040694_0.0008326_0.0003004.png
                gene_name: SYTL1
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.00083 
      ci_cons_bounds_left: 0.00081 
     ci_cons_bounds_right: 0.00086 
                  p_joint: 0.00030 
     ci_joint_bounds_left: 0.00029 
    ci_joint_bounds_right: 0.00032 

Current progress: 91 percent done.
SYTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
Cons ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
KS ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
SYTL3   10000 perm   2 sec   (6015 perm/sec)   p_kst 5.028000e-01   p_cons 8.961000e-01   p_joint 8.953000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL3.2_1681_10000_0.5028_0.8961_0.8953.png
                gene_name: SYTL3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 92 percent done.
TAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
TAB3   10000 perm   2 sec   (6046 perm/sec)   p_kst 8.943000e-01   p_cons 4.110000e-02   p_joint 1.860000e-01

Joint ci ratio: 7.446280e-02	ci left: 1.171500e-01	ci right 1.262603e-01	k: 2433	n:20000
Cons ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
KS ci ratio: 9.348278e-03	ci left: 8.936208e-01	ci right 9.020632e-01	k: 17958	n:20000
TAB3   20000 perm   4 sec   (5292 perm/sec)   p_kst 8.979000e-01   p_cons 3.975000e-02   p_joint 1.216500e-01

Joint ci ratio: 6.718852e-02	ci left: 9.846593e-02	ci right 1.053447e-01	k: 3056	n:30000
Cons ci ratio: 1.106806e-01	ci left: 3.790787e-02	ci right 4.238175e-02	k: 1203	n:30000
KS ci ratio: 7.653267e-03	ci left: 8.939111e-01	ci right 9.008117e-01	k: 26922	n:30000
TAB3   30000 perm   6 sec   (5020 perm/sec)   p_kst 8.974000e-01   p_cons 4.010000e-02   p_joint 1.018667e-01

Joint ci ratio: 5.799722e-02	ci left: 9.951942e-02	ci right 1.054884e-01	k: 4099	n:40000
Cons ci ratio: 9.655446e-02	ci left: 3.766101e-02	ci right 4.150620e-02	k: 1582	n:40000
KS ci ratio: 6.616067e-03	ci left: 8.947141e-01	ci right 9.006780e-01	k: 35909	n:40000
TAB3   40000 perm   8 sec   (4825 perm/sec)   p_kst 8.977250e-01   p_cons 3.955000e-02   p_joint 1.024750e-01

Outputting figure to mutsig2_images.part000000000170/TAB3.2_2167_40000_0.89772_0.03955_0.10247.png
                gene_name: TAB3
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 94 percent done.
TADA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
TADA2B   10000 perm   2 sec   (6257 perm/sec)   p_kst 3.990000e-01   p_cons 2.087000e-01   p_joint 1.940000e-01

Outputting figure to mutsig2_images.part000000000170/TADA2B.2_1271_10000_0.399_0.2087_0.194.png
                gene_name: TADA2B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 95 percent done.
TAF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
KS ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
TAF15   10000 perm   2 sec   (6106 perm/sec)   p_kst 9.740000e-01   p_cons 1.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAF15.2_1843_10000_0.974_0.1489_1.png
                gene_name: TAF15
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
TAF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
Cons ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
KS ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
TAF1C   10000 perm   2 sec   (5740 perm/sec)   p_kst 4.195000e-01   p_cons 4.579000e-01   p_joint 4.186000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1C.2_2662_10000_0.4195_0.4579_0.4186.png
                gene_name: TAF1C
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 98 percent done.
TAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
Cons ci ratio: 1.494067e-02	ci left: 8.665194e-01	ci right 8.796624e-01	k: 8732	n:10000
KS ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
TAF6   10000 perm   2 sec   (6123 perm/sec)   p_kst 2.990000e-02   p_cons 8.732000e-01   p_joint 1.307000e-01

Joint ci ratio: 8.486178e-02	ci left: 9.229449e-02	ci right 1.005233e-01	k: 1927	n:20000
Cons ci ratio: 1.063270e-02	ci left: 8.670369e-01	ci right 8.763547e-01	k: 17435	n:20000
KS ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
TAF6   20000 perm   4 sec   (5330 perm/sec)   p_kst 3.025000e-02   p_cons 8.717500e-01   p_joint 9.635000e-02

Joint ci ratio: 6.930307e-02	ci left: 9.301715e-02	ci right 9.972792e-02	k: 2890	n:30000
Cons ci ratio: 8.683237e-03	ci left: 8.678630e-01	ci right 8.754648e-01	k: 26151	n:30000
KS ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
TAF6   30000 perm   6 sec   (5049 perm/sec)   p_kst 3.000000e-02   p_cons 8.717000e-01   p_joint 9.633333e-02

Joint ci ratio: 3.303610e-02	ci left: 2.560297e-01	ci right 2.646551e-01	k: 10413	n:40000
Cons ci ratio: 7.505497e-03	ci left: 8.688128e-01	ci right 8.753831e-01	k: 34885	n:40000
KS ci ratio: 1.104565e-01	ci left: 2.883649e-02	ci right 3.223212e-02	k: 1220	n:40000
TAF6   40000 perm   8 sec   (4868 perm/sec)   p_kst 3.050000e-02   p_cons 8.721250e-01   p_joint 2.603250e-01

Joint ci ratio: 3.440248e-02	ci left: 2.025814e-01	ci right 2.096927e-01	k: 10306	n:50000
Cons ci ratio: 6.705383e-03	ci left: 8.694237e-01	ci right 8.752930e-01	k: 43619	n:50000
KS ci ratio: 9.778409e-02	ci left: 2.961526e-02	ci right 3.267949e-02	k: 1556	n:50000
TAF6   50000 perm   11 sec   (4717 perm/sec)   p_kst 3.112000e-02   p_cons 8.723800e-01   p_joint 2.061200e-01

Outputting figure to mutsig2_images.part000000000170/TAF6.2_2090_50000_0.03112_0.87238_0.20612.png
                gene_name: TAF6
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000170
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 170 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 4422599: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000171> was used as the working directory.
Started at Wed Oct 24 18:09:14 2012
Results reported at Wed Oct 24 18:21:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000171.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000171.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 171  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000171.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    912.22 sec.
    Max Memory :      5354 MB
    Max Swap   :      7673 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
171
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 171
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 171: processing genes 15381 - 15470
Calculating significance of each gene.
Using projection method.
15381	TAF6L	1
15382	TAF7	8.577607e-01
15383	TAF7L	4.284075e-01
15384	TAF8	1
15385	TAF9	6.155434e-01
15386	TAF9B	1
15387	TAGAP	5.240804e-01
15388	TAGLN	7.374579e-01
15389	TAGLN2	1
15390	TAGLN3	5.671203e-02
15391	TAL1	1
15392	TAL2	1
15393	TALDO1	1
15394	TANC1	9.999636e-01
15395	TANC2	8.434024e-01
15396	TANK	7.094233e-01
15397	TAOK1	1
15398	TAOK2	9.969299e-01
15399	TAOK3	7.676226e-01
15400	TAP1	1
15401	TAP2	8.092687e-02
15402	TAPBP	1
15403	TAPBPL	1
15404	TAPT1	6.770912e-01
15405	TARBP1	5.522687e-01
15406	TARBP2	7.880195e-01
15407	TARDBP	8.870011e-01
15408	TARP	5.123536e-01
15409	TARS	1
15410	TARS2	3.395793e-02
15411	TARSL2	2.813414e-01
15412	TAS1R1	9.149581e-01
15413	TAS1R2	1
15414	TAS1R3	9.312501e-01
15415	TAS2R1	4.109451e-04
15416	TAS2R10	8.236880e-01
15417	TAS2R13	6.265675e-01
15418	TAS2R14	2.290188e-01
15419	TAS2R16	1.591958e-02
15420	TAS2R19	5.129750e-02
15421	TAS2R20	2.046273e-01
15422	TAS2R3	5.430036e-01
15423	TAS2R30	3.305613e-01
15424	TAS2R31	4.291612e-01
15425	TAS2R38	4.045682e-02
15426	TAS2R39	6.045301e-02
15427	TAS2R4	1
15428	TAS2R40	5.625822e-02
15429	TAS2R41	1.929358e-01
15430	TAS2R42	6.083562e-01
15431	TAS2R43	1
15432	TAS2R46	4.458601e-01
15433	TAS2R5	8.444140e-01
15434	TAS2R50	2.309030e-01
15435	TAS2R60	8.553407e-02
15436	TAS2R7	1
15437	TAS2R8	1
15438	TAS2R9	6.530607e-01
15439	TASP1	9.239464e-01
15440	TAT	1.561935e-01
15441	TATDN1	7.860317e-01
15442	TATDN2	1
15443	TATDN3	3.299776e-01
15444	TAX1BP1	9.390978e-01
15445	TAX1BP3	1
15446	TAZ	2.540586e-01
In gene TBC1D1 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 3583    n = 1	mu =   3.68e-07
15447	TBC1D1	8.699127e-01
15448	TBC1D10A	3.231623e-01
15449	TBC1D10B	7.468066e-01
15450	TBC1D10C	1
15451	TBC1D12	8.184196e-01
15452	TBC1D13	1
15453	TBC1D14	8.657010e-01
15454	TBC1D15	9.731471e-01
15455	TBC1D16	9.573450e-02
15456	TBC1D17	1
15457	TBC1D19	4.021611e-01
15458	TBC1D2	9.954088e-01
15459	TBC1D20	9.352214e-01
15460	TBC1D21	1
15461	TBC1D22A	8.200158e-01
15462	TBC1D22B	6.524302e-01
15463	TBC1D23	9.610036e-01
15464	TBC1D24	7.619865e-01
15465	TBC1D25	1
15466	TBC1D26	1
15467	TBC1D28	7.297005e-01
15468	TBC1D29	1
15469	TBC1D2B	1
15470	TBC1D3B	7.948807e-01
Done

Running MutSig 2:
Scatter job 171: processing genes 15381 - 15470
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TARBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
Cons ci ratio: 1.382680e-02	ci left: 8.830891e-01	ci right 8.954831e-01	k: 8894	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
TARBP1   10000 perm   3 sec   (3660 perm/sec)   p_kst 5.140000e-02   p_cons 8.894000e-01   p_joint 1.316000e-01

Joint ci ratio: 6.844317e-02	ci left: 1.360564e-01	ci right 1.457483e-01	k: 2817	n:20000
Cons ci ratio: 9.845227e-03	ci left: 8.835478e-01	ci right 8.923391e-01	k: 17760	n:20000
KS ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
TARBP1   20000 perm   9 sec   (2205 perm/sec)   p_kst 5.325000e-02   p_cons 8.880000e-01   p_joint 1.408500e-01

Joint ci ratio: 5.173435e-02	ci left: 1.564616e-01	ci right 1.648042e-01	k: 4818	n:30000
Cons ci ratio: 7.604702e-03	ci left: 8.950950e-01	ci right 9.019609e-01	k: 26957	n:30000
KS ci ratio: 9.488055e-02	ci left: 5.127353e-02	ci right 5.641331e-02	k: 1614	n:30000
TARBP1   30000 perm   12 sec   (2428 perm/sec)   p_kst 5.380000e-02   p_cons 8.985667e-01   p_joint 1.606000e-01

Outputting figure to mutsig2_images.part000000000171/TARBP1.10_4986_30000_0.0538_0.89857_0.1606.png
                gene_name: TARBP1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
TAS2R16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
Cons ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
TAS2R16   10000 perm   2 sec   (5826 perm/sec)   p_kst 1.059000e-01   p_cons 9.785000e-01   p_joint 2.491000e-01

Joint ci ratio: 5.942286e-02	ci left: 1.733632e-01	ci right 1.840304e-01	k: 3573	n:20000
Cons ci ratio: 3.969387e-03	ci left: 9.779111e-01	ci right 9.818476e-01	k: 19599	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
TAS2R16   20000 perm   4 sec   (5083 perm/sec)   p_kst 1.059500e-01   p_cons 9.799500e-01   p_joint 1.786500e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R16.10_880_20000_0.10595_0.97995_0.17865.png
                gene_name: TAS2R16
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 4 percent done.
TANC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
Cons ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
TANC2   10000 perm   3 sec   (3223 perm/sec)   p_kst 3.526000e-01   p_cons 2.348000e-01   p_joint 4.551000e-01

Outputting figure to mutsig2_images.part000000000171/TANC2.9_6073_10000_0.3526_0.2348_0.4551.png
                gene_name: TANC2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 6 percent done.
TARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
TARS2   10000 perm   2 sec   (4366 perm/sec)   p_kst 1.432000e-01   p_cons 1.026000e-01   p_joint 9.490000e-02

Joint ci ratio: 7.898397e-02	ci left: 1.053025e-01	ci right 1.140113e-01	k: 2192	n:20000
Cons ci ratio: 8.597664e-02	ci left: 9.008782e-02	ci right 9.823061e-02	k: 1882	n:20000
KS ci ratio: 6.862754e-02	ci left: 1.354158e-01	ci right 1.450891e-01	k: 2804	n:20000
TARS2   20000 perm   5 sec   (3995 perm/sec)   p_kst 1.402000e-01   p_cons 9.410000e-02   p_joint 1.096000e-01

Outputting figure to mutsig2_images.part000000000171/TARS2.9_2229_20000_0.1402_0.0941_0.1096.png
                gene_name: TARS2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 8 percent done.
TANC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
TANC1   10000 perm   3 sec   (3725 perm/sec)   p_kst 4.842000e-01   p_cons 4.334000e-01   p_joint 5.968000e-01

Outputting figure to mutsig2_images.part000000000171/TANC1.8_5691_10000_0.4842_0.4334_0.5968.png
                gene_name: TANC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 10 percent done.
TARSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111722e-02	ci left: 6.037736e-01	ci right 6.229603e-01	k: 6134	n:10000
Cons ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
KS ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
TARSL2   10000 perm   2 sec   (4369 perm/sec)   p_kst 5.777000e-01   p_cons 3.845000e-01   p_joint 6.134000e-01

Outputting figure to mutsig2_images.part000000000171/TARSL2.8_2485_10000_0.5777_0.3845_0.6134.png
                gene_name: TARSL2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 12 percent done.
TBC1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
TBC1D1   10000 perm   2 sec   (4243 perm/sec)   p_kst 1.335000e-01   p_cons 2.030000e-02   p_joint 6.170000e-02

Joint ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
Cons ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
KS ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
TBC1D1   20000 perm   5 sec   (3841 perm/sec)   p_kst 1.322000e-01   p_cons 1.940000e-02   p_joint 2.755000e-02

Joint ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
Cons ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
KS ci ratio: 5.853887e-02	ci left: 1.262137e-01	ci right 1.338581e-01	k: 3900	n:30000
TBC1D1   30000 perm   8 sec   (3676 perm/sec)   p_kst 1.300000e-01   p_cons 1.883333e-02   p_joint 2.046667e-02

Joint ci ratio: 1.326984e-01	ci left: 1.993160e-02	ci right 2.278848e-02	k: 853	n:40000
Cons ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
KS ci ratio: 5.045867e-02	ci left: 1.277821e-01	ci right 1.344216e-01	k: 5243	n:40000
TBC1D1   40000 perm   11 sec   (3574 perm/sec)   p_kst 1.310750e-01   p_cons 1.792500e-02   p_joint 2.132500e-02

Joint ci ratio: 1.374784e-01	ci left: 1.489903e-02	ci right 1.711768e-02	k: 799	n:50000
Cons ci ratio: 1.304468e-01	ci left: 1.658165e-02	ci right 1.891482e-02	k: 886	n:50000
KS ci ratio: 4.518327e-02	ci left: 1.278758e-01	ci right 1.338071e-01	k: 6541	n:50000
TBC1D1   50000 perm   14 sec   (3471 perm/sec)   p_kst 1.308200e-01   p_cons 1.772000e-02   p_joint 1.598000e-02

Joint ci ratio: 1.298284e-01	ci left: 1.399417e-02	ci right 1.595315e-02	k: 897	n:60000
Cons ci ratio: 1.181468e-01	ci left: 1.695122e-02	ci right 1.909576e-02	k: 1080	n:60000
KS ci ratio: 4.112728e-02	ci left: 1.287889e-01	ci right 1.342134e-01	k: 7889	n:60000
TBC1D1   60000 perm   18 sec   (3409 perm/sec)   p_kst 1.314833e-01   p_cons 1.800000e-02   p_joint 1.495000e-02

Joint ci ratio: 1.112926e-01	ci left: 1.644426e-02	ci right 1.839604e-02	k: 1218	n:70000
Cons ci ratio: 1.086467e-01	ci left: 1.726432e-02	ci right 1.926161e-02	k: 1277	n:70000
KS ci ratio: 3.777699e-02	ci left: 1.307901e-01	ci right 1.358403e-01	k: 9331	n:70000
TBC1D1   70000 perm   21 sec   (3351 perm/sec)   p_kst 1.333000e-01   p_cons 1.824286e-02   p_joint 1.740000e-02

Joint ci ratio: 1.117890e-01	ci left: 1.429062e-02	ci right 1.599481e-02	k: 1210	n:80000
Cons ci ratio: 1.018634e-01	ci left: 1.724839e-02	ci right 1.911178e-02	k: 1453	n:80000
KS ci ratio: 3.564463e-02	ci left: 1.289793e-01	ci right 1.336725e-01	k: 10505	n:80000
TBC1D1   80000 perm   24 sec   (3298 perm/sec)   p_kst 1.313125e-01   p_cons 1.816250e-02   p_joint 1.512500e-02

Joint ci ratio: 1.156708e-01	ci left: 1.187068e-02	ci right 1.333877e-02	k: 1133	n:90000
Cons ci ratio: 9.657287e-02	ci left: 1.710887e-02	ci right 1.885573e-02	k: 1617	n:90000
KS ci ratio: 3.362452e-02	ci left: 1.289896e-01	ci right 1.334120e-01	k: 11807	n:90000
TBC1D1   90000 perm   28 sec   (3242 perm/sec)   p_kst 1.311889e-01   p_cons 1.796667e-02   p_joint 1.258889e-02

Joint ci ratio: 8.690560e-02	ci left: 1.907272e-02	ci right 2.081528e-02	k: 1993	n:100000
Cons ci ratio: 8.919180e-02	ci left: 1.810411e-02	ci right 1.980395e-02	k: 1894	n:100000
KS ci ratio: 3.189344e-02	ci left: 1.291430e-01	ci right 1.333384e-01	k: 13123	n:100000
TBC1D1   100000 perm   32 sec   (3171 perm/sec)   p_kst 1.312300e-01   p_cons 1.894000e-02   p_joint 1.993000e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D1.8_3583_100000_0.13123_0.01894_0.01993.png
                gene_name: TBC1D1
               theta_stop: 0.089 
                    nperm: 100000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 14 percent done.
TAOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.648233e-02	ci left: 6.774048e-01	ci right 6.956864e-01	k: 6866	n:10000
Cons ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
KS ci ratio: 3.792162e-02	ci left: 5.066519e-01	ci right 5.263385e-01	k: 5165	n:10000
TAOK3   10000 perm   2 sec   (4536 perm/sec)   p_kst 5.165000e-01   p_cons 7.980000e-01   p_joint 6.866000e-01

Outputting figure to mutsig2_images.part000000000171/TAOK3.7_2773_10000_0.5165_0.798_0.6866.png
                gene_name: TAOK3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 16 percent done.
TAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
Cons ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
TAP2   10000 perm   2 sec   (4684 perm/sec)   p_kst 3.718000e-01   p_cons 6.322000e-01   p_joint 5.189000e-01

Outputting figure to mutsig2_images.part000000000171/TAP2.7_2190_10000_0.3718_0.6322_0.5189.png
                gene_name: TAP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 18 percent done.
TAS1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
Cons ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TAS1R2   10000 perm   2 sec   (4802 perm/sec)   p_kst 1   p_cons 2.863000e-01   p_joint 9.041000e-01

Outputting figure to mutsig2_images.part000000000171/TAS1R2.7_2544_10000_1_0.2863_0.9041.png
                gene_name: TAS1R2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 20 percent done.
TAS2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.884357e-03	ci left: 9.572282e-01	ci right 9.649002e-01	k: 9612	n:10000
KS ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
TAS2R1   10000 perm   2 sec   (5515 perm/sec)   p_kst 8.029000e-01   p_cons 9.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R1.7_904_10000_0.8029_0.9612_1.png
                gene_name: TAS2R1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
TAS2R60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
TAS2R60   10000 perm   2 sec   (5974 perm/sec)   p_kst 2.837000e-01   p_cons 2.059000e-01   p_joint 3.073000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R60.7_960_10000_0.2837_0.2059_0.3073.png
                gene_name: TAS2R60
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 24 percent done.
TBC1D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
TBC1D16   10000 perm   2 sec   (4943 perm/sec)   p_kst 9.198000e-01   p_cons 9.110000e-02   p_joint 3.591000e-01

Joint ci ratio: 4.479260e-02	ci left: 2.706567e-01	ci right 2.831082e-01	k: 5537	n:20000
Cons ci ratio: 8.700051e-02	ci left: 8.812692e-02	ci right 9.619210e-02	k: 1842	n:20000
KS ci ratio: 8.164377e-03	ci left: 9.163580e-01	ci right 9.239193e-01	k: 18404	n:20000
TBC1D16   20000 perm   5 sec   (4348 perm/sec)   p_kst 9.202000e-01   p_cons 9.210000e-02   p_joint 2.768500e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D16.7_2348_20000_0.9202_0.0921_0.27685.png
                gene_name: TBC1D16
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 27 percent done.
TAGAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
Cons ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
KS ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
TAGAP   10000 perm   2 sec   (4960 perm/sec)   p_kst 6.575000e-01   p_cons 5.059000e-01   p_joint 7.127000e-01

Outputting figure to mutsig2_images.part000000000171/TAGAP.6_2250_10000_0.6575_0.5059_0.7127.png
                gene_name: TAGAP
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 29 percent done.
TAOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
KS ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
TAOK2   10000 perm   2 sec   (4247 perm/sec)   p_kst 9.578000e-01   p_cons 8.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAOK2.6_4698_10000_0.9578_0.875_1.png
                gene_name: TAOK2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
TARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
Cons ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
KS ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
TARS   10000 perm   2 sec   (5221 perm/sec)   p_kst 6.678000e-01   p_cons 5.237000e-01   p_joint 7.767000e-01

Outputting figure to mutsig2_images.part000000000171/TARS.5_2248_10000_0.6678_0.5237_0.7767.png
                gene_name: TARS
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 33 percent done.
TAS2R38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
KS ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
TAS2R38   10000 perm   2 sec   (5536 perm/sec)   p_kst 4.117000e-01   p_cons 6.300000e-03   p_joint 4.900000e-02

Joint ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
Cons ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
KS ci ratio: 3.285596e-02	ci left: 4.089072e-01	ci right 4.226173e-01	k: 8315	n:20000
TAS2R38   20000 perm   4 sec   (4961 perm/sec)   p_kst 4.157500e-01   p_cons 5.950000e-03   p_joint 2.450000e-02

Joint ci ratio: 1.324542e-01	ci left: 2.648489e-02	ci right 3.027385e-02	k: 850	n:30000
Cons ci ratio: 2.929386e-01	ci left: 5.064840e-03	ci right 6.832899e-03	k: 177	n:30000
KS ci ratio: 2.689306e-02	ci left: 4.089838e-01	ci right 4.201661e-01	k: 12437	n:30000
TAS2R38   30000 perm   6 sec   (4721 perm/sec)   p_kst 4.145667e-01   p_cons 5.900000e-03   p_joint 2.833333e-02

Joint ci ratio: 1.368497e-01	ci left: 1.872293e-02	ci right 2.149735e-02	k: 803	n:40000
Cons ci ratio: 2.507000e-01	ci left: 5.313599e-03	ci right 6.859426e-03	k: 242	n:40000
KS ci ratio: 2.322657e-02	ci left: 4.110637e-01	ci right 4.207486e-01	k: 16636	n:40000
TAS2R38   40000 perm   9 sec   (4534 perm/sec)   p_kst 4.159000e-01   p_cons 6.050000e-03   p_joint 2.007500e-02

Joint ci ratio: 1.833396e-01	ci left: 8.228989e-03	ci right 9.908752e-03	k: 452	n:50000
Cons ci ratio: 2.248862e-01	ci left: 5.360775e-03	ci right 6.737522e-03	k: 301	n:50000
KS ci ratio: 2.107428e-02	ci left: 4.046460e-01	ci right 4.132845e-01	k: 20448	n:50000
TAS2R38   50000 perm   11 sec   (4415 perm/sec)   p_kst 4.089600e-01   p_cons 6.020000e-03   p_joint 9.040000e-03

Joint ci ratio: 1.738743e-01	ci left: 7.669311e-03	ci right 9.145498e-03	k: 503	n:60000
Cons ci ratio: 2.080242e-01	ci left: 5.271264e-03	ci right 6.510597e-03	k: 352	n:60000
KS ci ratio: 1.927248e-02	ci left: 4.041636e-01	ci right 4.120453e-01	k: 24486	n:60000
TAS2R38   60000 perm   14 sec   (4315 perm/sec)   p_kst 4.081000e-01   p_cons 5.866667e-03   p_joint 8.383333e-03

Joint ci ratio: 1.629443e-01	ci left: 7.531534e-03	ci right 8.881138e-03	k: 573	n:70000
Cons ci ratio: 1.907004e-01	ci left: 5.427709e-03	ci right 6.585244e-03	k: 419	n:70000
KS ci ratio: 1.785349e-02	ci left: 4.041705e-01	ci right 4.114657e-01	k: 28547	n:70000
TAS2R38   70000 perm   17 sec   (4196 perm/sec)   p_kst 4.078143e-01   p_cons 5.985714e-03   p_joint 8.185714e-03

Joint ci ratio: 1.218333e-01	ci left: 1.199613e-02	ci right 1.356450e-02	k: 1021	n:80000
Cons ci ratio: 1.776409e-01	ci left: 5.512421e-03	ci right 6.598869e-03	k: 483	n:80000
KS ci ratio: 1.673602e-02	ci left: 4.033807e-01	ci right 4.102011e-01	k: 32543	n:80000
TAS2R38   80000 perm   19 sec   (4108 perm/sec)   p_kst 4.067875e-01   p_cons 6.037500e-03   p_joint 1.276250e-02

Joint ci ratio: 1.029074e-01	ci left: 1.504953e-02	ci right 1.669300e-02	k: 1427	n:90000
Cons ci ratio: 1.678697e-01	ci left: 5.516526e-03	ci right 6.537929e-03	k: 541	n:90000
KS ci ratio: 1.576943e-02	ci left: 4.038656e-01	ci right 4.102960e-01	k: 36637	n:90000
TAS2R38   90000 perm   22 sec   (4036 perm/sec)   p_kst 4.070778e-01   p_cons 6.011111e-03   p_joint 1.585556e-02

Joint ci ratio: 1.049460e-01	ci left: 1.303737e-02	ci right 1.449104e-02	k: 1375	n:100000
Cons ci ratio: 1.584922e-01	ci left: 5.597955e-03	ci right 6.571028e-03	k: 607	n:100000
KS ci ratio: 1.494591e-02	ci left: 4.044922e-01	ci right 4.105932e-01	k: 40754	n:100000
TAS2R38   100000 perm   25 sec   (3956 perm/sec)   p_kst 4.075400e-01   p_cons 6.070000e-03   p_joint 1.375000e-02

Joint ci ratio: 1.022273e-01	ci left: 1.251613e-02	ci right 1.387335e-02	k: 1450	n:110000
Cons ci ratio: 1.505288e-01	ci left: 5.665878e-03	ci right 6.596814e-03	k: 673	n:110000
KS ci ratio: 1.425747e-02	ci left: 4.043944e-01	ci right 4.102105e-01	k: 44803	n:110000
TAS2R38   110000 perm   28 sec   (3889 perm/sec)   p_kst 4.073000e-01   p_cons 6.118182e-03   p_joint 1.318182e-02

Joint ci ratio: 9.175110e-02	ci left: 1.429540e-02	ci right 1.567818e-02	k: 1797	n:120000
Cons ci ratio: 1.450435e-01	ci left: 5.611022e-03	ci right 6.496438e-03	k: 725	n:120000
KS ci ratio: 1.366395e-02	ci left: 4.040437e-01	ci right 4.096108e-01	k: 48819	n:120000
TAS2R38   120000 perm   31 sec   (3815 perm/sec)   p_kst 4.068250e-01   p_cons 6.041667e-03   p_joint 1.497500e-02

Joint ci ratio: 8.984866e-02	ci left: 1.378197e-02	ci right 1.508598e-02	k: 1875	n:130000
Cons ci ratio: 1.401171e-01	ci left: 5.565128e-03	ci right 6.410983e-03	k: 777	n:130000
KS ci ratio: 1.310540e-02	ci left: 4.049809e-01	ci right 4.103309e-01	k: 52995	n:130000
TAS2R38   130000 perm   35 sec   (3753 perm/sec)   p_kst 4.076538e-01   p_cons 5.976923e-03   p_joint 1.442308e-02

Joint ci ratio: 7.402714e-02	ci left: 1.890831e-02	ci right 2.036882e-02	k: 2748	n:140000
Cons ci ratio: 1.346044e-01	ci left: 5.615962e-03	ci right 6.433272e-03	k: 842	n:140000
KS ci ratio: 1.262375e-02	ci left: 4.052670e-01	ci right 4.104226e-01	k: 57098	n:140000
TAS2R38   140000 perm   38 sec   (3696 perm/sec)   p_kst 4.078429e-01   p_cons 6.014286e-03   p_joint 1.962857e-02

Joint ci ratio: 8.034890e-02	ci left: 1.499199e-02	ci right 1.625350e-02	k: 2342	n:150000
Cons ci ratio: 1.305659e-01	ci left: 5.583173e-03	ci right 6.369441e-03	k: 895	n:150000
KS ci ratio: 1.219713e-02	ci left: 4.052982e-01	ci right 4.102787e-01	k: 61168	n:150000
TAS2R38   150000 perm   41 sec   (3635 perm/sec)   p_kst 4.077867e-01   p_cons 5.966667e-03   p_joint 1.561333e-02

Joint ci ratio: 7.837613e-02	ci left: 1.479005e-02	ci right 1.600261e-02	k: 2462	n:160000
Cons ci ratio: 1.265354e-01	ci left: 5.585068e-03	ci right 6.345501e-03	k: 953	n:160000
KS ci ratio: 1.181057e-02	ci left: 4.053469e-01	ci right 4.101689e-01	k: 65241	n:160000
TAS2R38   160000 perm   45 sec   (3574 perm/sec)   p_kst 4.077562e-01   p_cons 5.956250e-03   p_joint 1.538750e-02

Joint ci ratio: 7.679870e-02	ci left: 1.451409e-02	ci right 1.567900e-02	k: 2565	n:170000
Cons ci ratio: 1.231629e-01	ci left: 5.558558e-03	ci right 6.293739e-03	k: 1006	n:170000
KS ci ratio: 1.145593e-02	ci left: 4.055037e-01	ci right 4.101818e-01	k: 69333	n:170000
TAS2R38   170000 perm   48 sec   (3515 perm/sec)   p_kst 4.078412e-01   p_cons 5.917647e-03   p_joint 1.508824e-02

Joint ci ratio: 7.630519e-02	ci left: 1.389831e-02	ci right 1.500630e-02	k: 2600	n:180000
Cons ci ratio: 1.194809e-01	ci left: 5.589134e-03	ci right 6.304697e-03	k: 1069	n:180000
KS ci ratio: 1.115643e-02	ci left: 4.045627e-01	ci right 4.091070e-01	k: 73230	n:180000
TAS2R38   180000 perm   52 sec   (3463 perm/sec)   p_kst 4.068333e-01   p_cons 5.938889e-03   p_joint 1.444444e-02

Joint ci ratio: 6.812791e-02	ci left: 1.654250e-02	ci right 1.771440e-02	k: 3253	n:190000
Cons ci ratio: 1.165771e-01	ci left: 5.570786e-03	ci right 6.265472e-03	k: 1123	n:190000
KS ci ratio: 1.086650e-02	ci left: 4.042850e-01	ci right 4.087074e-01	k: 77234	n:190000
TAS2R38   190000 perm   56 sec   (3411 perm/sec)   p_kst 4.064947e-01   p_cons 5.910526e-03   p_joint 1.712105e-02

Joint ci ratio: 6.751711e-02	ci left: 1.601506e-02	ci right 1.713902e-02	k: 3314	n:200000
Cons ci ratio: 1.142663e-01	ci left: 5.515597e-03	ci right 6.188847e-03	k: 1169	n:200000
KS ci ratio: 1.058050e-02	ci left: 4.048358e-01	ci right 4.091469e-01	k: 81398	n:200000
TAS2R38   200000 perm   60 sec   (3360 perm/sec)   p_kst 4.069900e-01   p_cons 5.845000e-03   p_joint 1.657000e-02

Joint ci ratio: 6.475247e-02	ci left: 1.659667e-02	ci right 1.771196e-02	k: 3601	n:210000
Cons ci ratio: 1.113985e-01	ci left: 5.535231e-03	ci right 6.192807e-03	k: 1230	n:210000
KS ci ratio: 1.032693e-02	ci left: 4.048216e-01	ci right 4.090286e-01	k: 85454	n:210000
TAS2R38   210000 perm   63 sec   (3313 perm/sec)   p_kst 4.069238e-01   p_cons 5.857143e-03   p_joint 1.714762e-02

Joint ci ratio: 6.291284e-02	ci left: 1.679505e-02	ci right 1.789044e-02	k: 3814	n:220000
Cons ci ratio: 1.086941e-01	ci left: 5.557694e-03	ci right 6.200884e-03	k: 1292	n:220000
KS ci ratio: 1.008439e-02	ci left: 4.051141e-01	ci right 4.092247e-01	k: 89577	n:220000
TAS2R38   220000 perm   67 sec   (3263 perm/sec)   p_kst 4.071682e-01   p_cons 5.872727e-03   p_joint 1.733636e-02

Joint ci ratio: 6.180978e-02	ci left: 1.665544e-02	ci right 1.772200e-02	k: 3952	n:230000
Cons ci ratio: 1.060202e-01	ci left: 5.595313e-03	ci right 6.225932e-03	k: 1358	n:230000
KS ci ratio: 9.859866e-03	ci left: 4.052997e-01	ci right 4.093200e-01	k: 93681	n:230000
TAS2R38   230000 perm   71 sec   (3221 perm/sec)   p_kst 4.073087e-01   p_cons 5.904348e-03   p_joint 1.718261e-02

Joint ci ratio: 5.723422e-02	ci left: 1.862185e-02	ci right 1.972314e-02	k: 4600	n:240000
Cons ci ratio: 1.033521e-01	ci left: 5.650271e-03	ci right 6.270085e-03	k: 1429	n:240000
KS ci ratio: 9.651861e-03	ci left: 4.053625e-01	ci right 4.092981e-01	k: 97759	n:240000
TAS2R38   240000 perm   75 sec   (3179 perm/sec)   p_kst 4.073292e-01   p_cons 5.954167e-03   p_joint 1.916667e-02

Joint ci ratio: 5.689236e-02	ci left: 1.810553e-02	ci right 1.916967e-02	k: 4658	n:250000
Cons ci ratio: 1.014555e-01	ci left: 5.634725e-03	ci right 6.240815e-03	k: 1483	n:250000
KS ci ratio: 9.450223e-03	ci left: 4.057408e-01	ci right 4.095973e-01	k: 101917	n:250000
TAS2R38   250000 perm   80 sec   (3140 perm/sec)   p_kst 4.076680e-01   p_cons 5.932000e-03   p_joint 1.863200e-02

Joint ci ratio: 5.355204e-02	ci left: 1.965128e-02	ci right 2.073637e-02	k: 5249	n:260000
Cons ci ratio: 9.927068e-02	ci left: 5.665484e-03	ci right 6.260995e-03	k: 1549	n:260000
KS ci ratio: 9.271780e-03	ci left: 4.055143e-01	ci right 4.092955e-01	k: 105925	n:260000
TAS2R38   260000 perm   84 sec   (3096 perm/sec)   p_kst 4.074038e-01   p_cons 5.957692e-03   p_joint 2.018846e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R38.5_1006_260000_0.4074_0.0059577_0.020188.png
                gene_name: TAS2R38
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0060 
      ci_cons_bounds_left: 0.0057 
     ci_cons_bounds_right: 0.0063 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 35 percent done.
TAS2R39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
TAS2R39   10000 perm   2 sec   (5878 perm/sec)   p_kst 7.210000e-02   p_cons 2.030000e-02   p_joint 1.420000e-02

Joint ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
Cons ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
KS ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
TAS2R39   20000 perm   4 sec   (5176 perm/sec)   p_kst 7.650000e-02   p_cons 1.890000e-02   p_joint 6.150000e-03

Joint ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
Cons ci ratio: 1.636481e-01	ci left: 1.722918e-02	ci right 2.033167e-02	k: 562	n:30000
KS ci ratio: 7.768444e-02	ci left: 7.518613e-02	ci right 8.129584e-02	k: 2346	n:30000
TAS2R39   30000 perm   6 sec   (4911 perm/sec)   p_kst 7.820000e-02   p_cons 1.873333e-02   p_joint 1.010000e-02

Joint ci ratio: 2.045243e-01	ci left: 8.168963e-03	ci right 1.005334e-02	k: 363	n:40000
Cons ci ratio: 1.435538e-01	ci left: 1.698493e-02	ci right 1.963566e-02	k: 731	n:40000
KS ci ratio: 6.960017e-02	ci left: 7.091201e-02	ci right 7.605011e-02	k: 2938	n:40000
TAS2R39   40000 perm   8 sec   (4738 perm/sec)   p_kst 7.345000e-02   p_cons 1.827500e-02   p_joint 9.075000e-03

Joint ci ratio: 1.882227e-01	ci left: 7.790214e-03	ci right 9.427604e-03	k: 429	n:50000
Cons ci ratio: 1.286856e-01	ci left: 1.704635e-02	ci right 1.941006e-02	k: 910	n:50000
KS ci ratio: 6.240609e-02	ci left: 7.085295e-02	ci right 7.543676e-02	k: 3656	n:50000
TAS2R39   50000 perm   11 sec   (4608 perm/sec)   p_kst 7.312000e-02   p_cons 1.820000e-02   p_joint 8.580000e-03

Joint ci ratio: 1.168329e-01	ci left: 1.733966e-02	ci right 1.950728e-02	k: 1104	n:60000
Cons ci ratio: 1.187636e-01	ci left: 1.677323e-02	ci right 1.890711e-02	k: 1069	n:60000
KS ci ratio: 5.489352e-02	ci left: 7.617900e-02	ci right 8.049522e-02	k: 4699	n:60000
TAS2R39   60000 perm   13 sec   (4503 perm/sec)   p_kst 7.831667e-02   p_cons 1.781667e-02   p_joint 1.840000e-02

Joint ci ratio: 1.216602e-01	ci left: 1.372447e-02	ci right 1.551609e-02	k: 1022	n:70000
Cons ci ratio: 1.091699e-01	ci left: 1.709749e-02	ci right 1.908560e-02	k: 1265	n:70000
KS ci ratio: 5.086856e-02	ci left: 7.620731e-02	ci right 8.019916e-02	k: 5473	n:70000
TAS2R39   70000 perm   16 sec   (4398 perm/sec)   p_kst 7.818571e-02   p_cons 1.807143e-02   p_joint 1.460000e-02

Joint ci ratio: 1.221972e-01	ci left: 1.192340e-02	ci right 1.348724e-02	k: 1015	n:80000
Cons ci ratio: 1.032462e-01	ci left: 1.678537e-02	ci right 1.862484e-02	k: 1415	n:80000
KS ci ratio: 4.778236e-02	ci left: 7.574280e-02	ci right 7.946290e-02	k: 6207	n:80000
TAS2R39   80000 perm   19 sec   (4306 perm/sec)   p_kst 7.758750e-02   p_cons 1.768750e-02   p_joint 1.268750e-02

Joint ci ratio: 1.187862e-01	ci left: 1.124491e-02	ci right 1.267569e-02	k: 1075	n:90000
Cons ci ratio: 9.721729e-02	ci left: 1.688109e-02	ci right 1.861686e-02	k: 1596	n:90000
KS ci ratio: 4.500427e-02	ci left: 7.599213e-02	ci right 7.950181e-02	k: 6996	n:90000
TAS2R39   90000 perm   21 sec   (4227 perm/sec)   p_kst 7.773333e-02   p_cons 1.773333e-02   p_joint 1.194444e-02

Joint ci ratio: 1.026989e-01	ci left: 1.362200e-02	ci right 1.510637e-02	k: 1435	n:100000
Cons ci ratio: 9.237285e-02	ci left: 1.687221e-02	ci right 1.851593e-02	k: 1768	n:100000
KS ci ratio: 4.315836e-02	ci left: 7.456288e-02	ci right 7.786175e-02	k: 7620	n:100000
TAS2R39   100000 perm   24 sec   (4152 perm/sec)   p_kst 7.620000e-02   p_cons 1.768000e-02   p_joint 1.435000e-02

Joint ci ratio: 8.568225e-02	ci left: 1.787204e-02	ci right 1.948075e-02	k: 2053	n:110000
Cons ci ratio: 8.797979e-02	ci left: 1.694676e-02	ci right 1.851518e-02	k: 1949	n:110000
KS ci ratio: 4.117409e-02	ci left: 7.455770e-02	ci right 7.770106e-02	k: 8373	n:110000
TAS2R39   110000 perm   27 sec   (4075 perm/sec)   p_kst 7.611818e-02   p_cons 1.771818e-02   p_joint 1.866364e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R39.5_1020_110000_0.076118_0.017718_0.018664.png
                gene_name: TAS2R39
               theta_stop: 0.088 
                    nperm: 110000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 37 percent done.
TBC1D22B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
TBC1D22B   10000 perm   2 sec   (5458 perm/sec)   p_kst 6.480000e-02   p_cons 2.870000e-02   p_joint 2.900000e-02

Joint ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
Cons ci ratio: 1.511123e-01	ci left: 3.008562e-02	ci right 3.505150e-02	k: 650	n:20000
KS ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
TBC1D22B   20000 perm   4 sec   (4907 perm/sec)   p_kst 7.020000e-02   p_cons 3.250000e-02   p_joint 5.310000e-02

Joint ci ratio: 8.376422e-02	ci left: 6.517655e-02	ci right 7.090745e-02	k: 2040	n:30000
Cons ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
KS ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
TBC1D22B   30000 perm   6 sec   (4671 perm/sec)   p_kst 7.063333e-02   p_cons 3.310000e-02   p_joint 6.800000e-02

Joint ci ratio: 7.240432e-02	ci left: 6.579764e-02	ci right 7.076525e-02	k: 2730	n:40000
Cons ci ratio: 1.060150e-01	ci left: 3.129522e-02	ci right 3.482299e-02	k: 1321	n:40000
KS ci ratio: 7.099160e-02	ci left: 6.830516e-02	ci right 7.335736e-02	k: 2832	n:40000
TBC1D22B   40000 perm   9 sec   (4526 perm/sec)   p_kst 7.080000e-02   p_cons 3.302500e-02   p_joint 6.825000e-02

Joint ci ratio: 9.161748e-02	ci left: 3.369952e-02	ci right 3.695472e-02	k: 1765	n:50000
Cons ci ratio: 9.525597e-02	ci left: 3.119736e-02	ci right 3.433720e-02	k: 1637	n:50000
KS ci ratio: 6.268393e-02	ci left: 7.026163e-02	ci right 7.482815e-02	k: 3626	n:50000
TBC1D22B   50000 perm   11 sec   (4367 perm/sec)   p_kst 7.252000e-02   p_cons 3.274000e-02   p_joint 3.530000e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D22B.5_1570_50000_0.07252_0.03274_0.0353.png
                gene_name: TBC1D22B
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 39 percent done.
TAGLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
Cons ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
KS ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
TAGLN3   10000 perm   2 sec   (6241 perm/sec)   p_kst 7.348000e-01   p_cons 6.194000e-01   p_joint 8.700000e-01

Outputting figure to mutsig2_images.part000000000171/TAGLN3.4_616_10000_0.7348_0.6194_0.87.png
                gene_name: TAGLN3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 41 percent done.
TAS2R19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
Cons ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
KS ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
TAS2R19   10000 perm   2 sec   (6412 perm/sec)   p_kst 6.916000e-01   p_cons 3.782000e-01   p_joint 6.609000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R19.4_903_10000_0.6916_0.3782_0.6609.png
                gene_name: TAS2R19
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 43 percent done.
TAS2R40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
Cons ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TAS2R40   10000 perm   2 sec   (5920 perm/sec)   p_kst 1   p_cons 1.298000e-01   p_joint 3.173000e-01

Joint ci ratio: 2.599872e-02	ci left: 5.250054e-01	ci right 5.388853e-01	k: 10639	n:20000
Cons ci ratio: 7.162618e-02	ci left: 1.255651e-01	ci right 1.349427e-01	k: 2604	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
TAS2R40   20000 perm   4 sec   (5008 perm/sec)   p_kst 1   p_cons 1.302000e-01   p_joint 5.319500e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R40.4_975_20000_1_0.1302_0.53195.png
                gene_name: TAS2R40
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 45 percent done.
TAS2R50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
Cons ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
TAS2R50   10000 perm   2 sec   (5801 perm/sec)   p_kst 8.744000e-01   p_cons 6.385000e-01   p_joint 8.398000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R50.4_904_10000_0.8744_0.6385_0.8398.png
                gene_name: TAS2R50
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 47 percent done.
TAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
Cons ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
TAT   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.031000e-01   p_cons 3.943000e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000171/TAT.4_1409_10000_0.2031_0.3943_0.3002.png
                gene_name: TAT
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 49 percent done.
TAX1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
TAX1BP1   10000 perm   2 sec   (5142 perm/sec)   p_kst 2.690000e-02   p_cons 2.986000e-01   p_joint 7.240000e-02

Joint ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
Cons ci ratio: 4.229537e-02	ci left: 2.940510e-01	ci right 3.068071e-01	k: 6008	n:20000
KS ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
TAX1BP1   20000 perm   4 sec   (4624 perm/sec)   p_kst 2.720000e-02   p_cons 3.004000e-01   p_joint 4.895000e-02

Joint ci ratio: 9.837387e-02	ci left: 4.778864e-02	ci right 5.276558e-02	k: 1507	n:30000
Cons ci ratio: 3.561981e-02	ci left: 2.824489e-01	ci right 2.927256e-01	k: 8627	n:30000
KS ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
TAX1BP1   30000 perm   7 sec   (4421 perm/sec)   p_kst 2.673333e-02   p_cons 2.875667e-01   p_joint 5.023333e-02

Joint ci ratio: 9.781591e-02	ci left: 3.670881e-02	ci right 4.050854e-02	k: 1543	n:40000
Cons ci ratio: 2.989495e-02	ci left: 2.961087e-01	ci right 3.051203e-01	k: 12024	n:40000
KS ci ratio: 1.190832e-01	ci left: 2.480228e-02	ci right 2.796698e-02	k: 1054	n:40000
TAX1BP1   40000 perm   9 sec   (4266 perm/sec)   p_kst 2.635000e-02   p_cons 3.006000e-01   p_joint 3.857500e-02

Joint ci ratio: 7.457943e-02	ci left: 5.040391e-02	ci right 5.432826e-02	k: 2617	n:50000
Cons ci ratio: 2.673282e-02	ci left: 2.966823e-01	ci right 3.047409e-01	k: 15035	n:50000
KS ci ratio: 1.073399e-01	ci left: 2.458376e-02	ci right 2.739164e-02	k: 1298	n:50000
TAX1BP1   50000 perm   12 sec   (4161 perm/sec)   p_kst 2.596000e-02   p_cons 3.007000e-01   p_joint 5.234000e-02

Joint ci ratio: 8.837490e-02	ci left: 3.034511e-02	ci right 3.316709e-02	k: 1904	n:60000
Cons ci ratio: 2.504438e-02	ci left: 2.862881e-01	ci right 2.935656e-01	k: 17395	n:60000
KS ci ratio: 9.798121e-02	ci left: 2.470877e-02	ci right 2.727069e-02	k: 1558	n:60000
TAX1BP1   60000 perm   15 sec   (4073 perm/sec)   p_kst 2.596667e-02   p_cons 2.899167e-01   p_joint 3.173333e-02

Outputting figure to mutsig2_images.part000000000171/TAX1BP1.4_2434_60000_0.025967_0.28992_0.031733.png
                gene_name: TAX1BP1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 51 percent done.
TBC1D10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
TBC1D10A   10000 perm   2 sec   (5596 perm/sec)   p_kst 3.909000e-01   p_cons 6.380000e-01   p_joint 5.186000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D10A.4_1563_10000_0.3909_0.638_0.5186.png
                gene_name: TBC1D10A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 53 percent done.
TAF7L
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
TAF7L   10000 perm   2 sec   (6216 perm/sec)   p_kst 4.324000e-01   p_cons 5.694000e-01   p_joint 8.309000e-01

Outputting figure to mutsig2_images.part000000000171/TAF7L.2_1441_10000_0.4324_0.5694_0.8309.png
                gene_name: TAF7L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 55 percent done.
TAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
Cons ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
TAL1   10000 perm   2 sec   (6475 perm/sec)   p_kst 1.063000e-01   p_cons 3.650000e-02   p_joint 3.380000e-02

Joint ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
TAL1   20000 perm   4 sec   (5630 perm/sec)   p_kst 1.106000e-01   p_cons 3.655000e-02   p_joint 7.150000e-02

Joint ci ratio: 7.791879e-02	ci left: 7.476056e-02	ci right 8.085484e-02	k: 2333	n:30000
Cons ci ratio: 1.159489e-01	ci left: 3.456824e-02	ci right 3.885541e-02	k: 1100	n:30000
KS ci ratio: 6.356645e-02	ci left: 1.089125e-01	ci right 1.160960e-01	k: 3374	n:30000
TAL1   30000 perm   6 sec   (5304 perm/sec)   p_kst 1.124667e-01   p_cons 3.666667e-02   p_joint 7.776667e-02

Joint ci ratio: 7.160553e-02	ci left: 6.719878e-02	ci right 7.221390e-02	k: 2787	n:40000
Cons ci ratio: 9.981660e-02	ci left: 3.526894e-02	ci right 3.899865e-02	k: 1484	n:40000
KS ci ratio: 5.517475e-02	ci left: 1.089499e-01	ci right 1.151565e-01	k: 4481	n:40000
TAL1   40000 perm   8 sec   (5099 perm/sec)   p_kst 1.120250e-01   p_cons 3.710000e-02   p_joint 6.967500e-02

Outputting figure to mutsig2_images.part000000000171/TAL1.3_1008_40000_0.11202_0.0371_0.069675.png
                gene_name: TAL1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 57 percent done.
TARP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
TARP   10000 perm   1 sec   (6770 perm/sec)   p_kst 1.896000e-01   p_cons 7.500000e-03   p_joint 2.620000e-02

Joint ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
Cons ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
KS ci ratio: 5.805281e-02	ci left: 1.802328e-01	ci right 1.910587e-01	k: 3712	n:20000
TARP   20000 perm   3 sec   (5866 perm/sec)   p_kst 1.856000e-01   p_cons 6.900000e-03   p_joint 2.320000e-02

Joint ci ratio: 1.268842e-01	ci left: 2.887377e-02	ci right 3.281777e-02	k: 924	n:30000
Cons ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
KS ci ratio: 4.717405e-02	ci left: 1.826677e-01	ci right 1.915263e-01	k: 5612	n:30000
TARP   30000 perm   5 sec   (5523 perm/sec)   p_kst 1.870667e-01   p_cons 7.133333e-03   p_joint 3.080000e-02

Joint ci ratio: 1.249885e-01	ci left: 2.249804e-02	ci right 2.552160e-02	k: 959	n:40000
Cons ci ratio: 2.033995e-01	ci left: 8.263895e-03	ci right 1.015838e-02	k: 367	n:40000
KS ci ratio: 4.079034e-02	ci left: 1.837349e-01	ci right 1.914105e-01	k: 7502	n:40000
TARP   40000 perm   8 sec   (5299 perm/sec)   p_kst 1.875500e-01   p_cons 9.175000e-03   p_joint 2.397500e-02

Joint ci ratio: 1.217855e-01	ci left: 1.906239e-02	ci right 2.155374e-02	k: 1014	n:50000
Cons ci ratio: 1.829326e-01	ci left: 8.267170e-03	ci right 9.950565e-03	k: 454	n:50000
KS ci ratio: 3.652659e-02	ci left: 1.837892e-01	ci right 1.906472e-01	k: 9360	n:50000
TARP   50000 perm   10 sec   (5118 perm/sec)   p_kst 1.872000e-01   p_cons 9.080000e-03   p_joint 2.028000e-02

Joint ci ratio: 1.352023e-01	ci left: 1.288178e-02	ci right 1.476568e-02	k: 828	n:60000
Cons ci ratio: 1.653216e-01	ci left: 8.515465e-03	ci right 1.006589e-02	k: 556	n:60000
KS ci ratio: 3.332621e-02	ci left: 1.842513e-01	ci right 1.905123e-01	k: 11242	n:60000
TARP   60000 perm   12 sec   (4958 perm/sec)   p_kst 1.873667e-01   p_cons 9.266667e-03   p_joint 1.380000e-02

Joint ci ratio: 1.228228e-01	ci left: 1.346123e-02	ci right 1.523650e-02	k: 1003	n:70000
Cons ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
KS ci ratio: 3.088283e-02	ci left: 1.842026e-01	ci right 1.899948e-01	k: 13096	n:70000
TARP   70000 perm   14 sec   (4830 perm/sec)   p_kst 1.870857e-01   p_cons 9.400000e-03   p_joint 1.432857e-02

Joint ci ratio: 9.058014e-02	ci left: 2.183786e-02	ci right 2.392194e-02	k: 1829	n:80000
Cons ci ratio: 1.416095e-01	ci left: 8.815272e-03	ci right 1.017066e-02	k: 758	n:80000
KS ci ratio: 2.897879e-02	ci left: 1.834456e-01	ci right 1.888522e-01	k: 14891	n:80000
TARP   80000 perm   17 sec   (4716 perm/sec)   p_kst 1.861375e-01   p_cons 9.475000e-03   p_joint 2.286250e-02

Joint ci ratio: 7.921385e-02	ci left: 2.543859e-02	ci right 2.754763e-02	k: 2383	n:90000
Cons ci ratio: 1.336591e-01	ci left: 8.833573e-03	ci right 1.010945e-02	k: 851	n:90000
KS ci ratio: 2.731196e-02	ci left: 1.837056e-01	ci right 1.888035e-01	k: 16762	n:90000
TARP   90000 perm   19 sec   (4617 perm/sec)   p_kst 1.862444e-01   p_cons 9.455556e-03   p_joint 2.647778e-02

Joint ci ratio: 7.557328e-02	ci left: 2.520895e-02	ci right 2.719866e-02	k: 2619	n:100000
Cons ci ratio: 1.271169e-01	ci left: 8.820865e-03	ci right 1.002785e-02	k: 941	n:100000
KS ci ratio: 2.580707e-02	ci left: 1.850452e-01	ci right 1.898930e-01	k: 18746	n:100000
TARP   100000 perm   22 sec   (4520 perm/sec)   p_kst 1.874600e-01   p_cons 9.410000e-03   p_joint 2.619000e-02

Joint ci ratio: 7.215923e-02	ci left: 2.518366e-02	ci right 2.707780e-02	k: 2873	n:110000
Cons ci ratio: 1.210951e-01	ci left: 8.864622e-03	ci right 1.001601e-02	k: 1037	n:110000
KS ci ratio: 2.461909e-02	ci left: 1.849981e-01	ci right 1.896184e-01	k: 20603	n:110000
TARP   110000 perm   25 sec   (4429 perm/sec)   p_kst 1.873000e-01   p_cons 9.427273e-03   p_joint 2.611818e-02

Joint ci ratio: 6.983731e-02	ci left: 2.468913e-02	ci right 2.648390e-02	k: 3069	n:120000
Cons ci ratio: 1.159586e-01	ci left: 8.886023e-03	ci right 9.987879e-03	k: 1131	n:120000
KS ci ratio: 2.357104e-02	ci left: 1.850960e-01	ci right 1.895192e-01	k: 22476	n:120000
TARP   120000 perm   28 sec   (4345 perm/sec)   p_kst 1.873000e-01   p_cons 9.425000e-03   p_joint 2.557500e-02

Joint ci ratio: 6.712689e-02	ci left: 2.470280e-02	ci right 2.642614e-02	k: 3322	n:130000
Cons ci ratio: 1.111505e-01	ci left: 8.949886e-03	ci right 1.001063e-02	k: 1231	n:130000
KS ci ratio: 2.265038e-02	ci left: 1.851287e-01	ci right 1.893776e-01	k: 24342	n:130000
TARP   130000 perm   31 sec   (4261 perm/sec)   p_kst 1.872462e-01   p_cons 9.469231e-03   p_joint 2.555385e-02

Joint ci ratio: 6.661702e-02	ci left: 2.333107e-02	ci right 2.494586e-02	k: 3378	n:140000
Cons ci ratio: 1.068948e-01	ci left: 9.005433e-03	ci right 1.002932e-02	k: 1331	n:140000
KS ci ratio: 2.181701e-02	ci left: 1.853375e-01	ci right 1.894326e-01	k: 26233	n:140000
TARP   140000 perm   33 sec   (4184 perm/sec)   p_kst 1.873786e-01   p_cons 9.507143e-03   p_joint 2.412857e-02

Joint ci ratio: 6.515897e-02	ci left: 2.279176e-02	ci right 2.433339e-02	k: 3533	n:150000
Cons ci ratio: 1.031296e-01	ci left: 9.047748e-03	ci right 1.003802e-02	k: 1430	n:150000
KS ci ratio: 2.108455e-02	ci left: 1.853018e-01	ci right 1.892570e-01	k: 28091	n:150000
TARP   150000 perm   37 sec   (4109 perm/sec)   p_kst 1.872733e-01   p_cons 9.533333e-03   p_joint 2.355333e-02

Joint ci ratio: 6.283940e-02	ci left: 2.299710e-02	ci right 2.449523e-02	k: 3798	n:160000
Cons ci ratio: 9.914895e-02	ci left: 9.195054e-03	ci right 1.016034e-02	k: 1547	n:160000
KS ci ratio: 2.039402e-02	ci left: 1.856772e-01	ci right 1.895091e-01	k: 30014	n:160000
TARP   160000 perm   40 sec   (4034 perm/sec)   p_kst 1.875875e-01   p_cons 9.668750e-03   p_joint 2.373750e-02

Outputting figure to mutsig2_images.part000000000171/TARP.3_521_160000_0.18759_0.0096688_0.023738.png
                gene_name: TARP
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 59 percent done.
TAS1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
TAS1R1   10000 perm   2 sec   (5261 perm/sec)   p_kst 9.270000e-02   p_cons 3.920000e-01   p_joint 1.718000e-01

Joint ci ratio: 4.765379e-02	ci left: 2.467383e-01	ci right 2.588337e-01	k: 5055	n:20000
Cons ci ratio: 3.581910e-02	ci left: 3.677860e-01	ci right 3.812505e-01	k: 7490	n:20000
KS ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
TAS1R1   20000 perm   4 sec   (4663 perm/sec)   p_kst 9.610000e-02   p_cons 3.745000e-01   p_joint 2.527500e-01

Outputting figure to mutsig2_images.part000000000171/TAS1R1.3_2550_20000_0.0961_0.3745_0.25275.png
                gene_name: TAS1R1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 61 percent done.
TAS1R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
Cons ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
TAS1R3   10000 perm   2 sec   (5288 perm/sec)   p_kst 2.040000e-01   p_cons 1.384000e-01   p_joint 1.036000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 6.910103e-02	ci left: 1.337898e-01	ci right 1.434155e-01	k: 2771	n:20000
KS ci ratio: 5.662465e-02	ci left: 1.877977e-01	ci right 1.987916e-01	k: 3865	n:20000
TAS1R3   20000 perm   4 sec   (4675 perm/sec)   p_kst 1.932500e-01   p_cons 1.385500e-01   p_joint 1.517500e-01

Outputting figure to mutsig2_images.part000000000171/TAS1R3.3_2582_20000_0.19325_0.13855_0.15175.png
                gene_name: TAS1R3
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
TAS2R14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
Cons ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
KS ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
TAS2R14   10000 perm   2 sec   (6495 perm/sec)   p_kst 4.248000e-01   p_cons 6.724000e-01   p_joint 6.734000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R14.3_957_10000_0.4248_0.6724_0.6734.png
                gene_name: TAS2R14
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 65 percent done.
TAS2R20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
TAS2R20   10000 perm   2 sec   (6205 perm/sec)   p_kst 6.005000e-01   p_cons 7.470000e-02   p_joint 2.045000e-01

Joint ci ratio: 5.408749e-02	ci left: 2.023432e-01	ci right 2.136418e-01	k: 4159	n:20000
Cons ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
KS ci ratio: 2.302188e-02	ci left: 5.849002e-01	ci right 5.985731e-01	k: 11835	n:20000
TAS2R20   20000 perm   4 sec   (5394 perm/sec)   p_kst 5.917500e-01   p_cons 7.485000e-02   p_joint 2.079500e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R20.3_934_20000_0.59175_0.07485_0.20795.png
                gene_name: TAS2R20
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
TAS2R31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
KS ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
TAS2R31   10000 perm   2 sec   (6344 perm/sec)   p_kst 3.736000e-01   p_cons 2.017000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R31.3_934_10000_0.3736_0.2017_0.4303.png
                gene_name: TAS2R31
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 69 percent done.
TAS2R41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
TAS2R41   10000 perm   2 sec   (6168 perm/sec)   p_kst 7.536000e-01   p_cons 9.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R41.3_928_10000_0.7536_0.9797_1.png
                gene_name: TAS2R41
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TBC1D19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
Cons ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
KS ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
TBC1D19   10000 perm   2 sec   (5713 perm/sec)   p_kst 5.773000e-01   p_cons 9.077000e-01   p_joint 9.556000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D19.3_1665_10000_0.5773_0.9077_0.9556.png
                gene_name: TBC1D19
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 73 percent done.
TAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
Cons ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KS ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
TAF7   10000 perm   2 sec   (6478 perm/sec)   p_kst 5.290000e-01   p_cons 8.294000e-01   p_joint 8.030000e-01

Outputting figure to mutsig2_images.part000000000171/TAF7.2_1054_10000_0.529_0.8294_0.803.png
                gene_name: TAF7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 76 percent done.
TAF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
Cons ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
KS ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
TAF9   10000 perm   2 sec   (6283 perm/sec)   p_kst 5.191000e-01   p_cons 9.102000e-01   p_joint 6.771000e-01

Outputting figure to mutsig2_images.part000000000171/TAF9.2_1361_10000_0.5191_0.9102_0.6771.png
                gene_name: TAF9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 78 percent done.
TANK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
TANK   10000 perm   2 sec   (6402 perm/sec)   p_kst 9.710000e-01   p_cons 7.683000e-01   p_joint 9.724000e-01

Outputting figure to mutsig2_images.part000000000171/TANK.2_1339_10000_0.971_0.7683_0.9724.png
                gene_name: TANK
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 80 percent done.
TAPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
Cons ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
KS ci ratio: 4.712230e-02	ci left: 3.992419e-01	ci right 4.186112e-01	k: 4089	n:10000
TAPBP   10000 perm   2 sec   (6191 perm/sec)   p_kst 4.089000e-01   p_cons 5.233000e-01   p_joint 7.972000e-01

Outputting figure to mutsig2_images.part000000000171/TAPBP.2_1559_10000_0.4089_0.5233_0.7972.png
                gene_name: TAPBP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 82 percent done.
TAS2R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
TAS2R3   10000 perm   2 sec   (6349 perm/sec)   p_kst 6.671000e-01   p_cons 7.093000e-01   p_joint 9.830000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R3.2_955_10000_0.6671_0.7093_0.983.png
                gene_name: TAS2R3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
TAS2R30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
Cons ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
TAS2R30   10000 perm   2 sec   (6627 perm/sec)   p_kst 1.428000e-01   p_cons 4.019000e-01   p_joint 4.896000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R30.2_964_10000_0.1428_0.4019_0.4896.png
                gene_name: TAS2R30
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 86 percent done.
TAS2R46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.860679e-03	ci left: 9.931864e-01	ci right 9.961140e-01	k: 9948	n:10000
Cons ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
KS ci ratio: 3.058833e-02	ci left: 6.119096e-01	ci right 6.310196e-01	k: 6215	n:10000
TAS2R46   10000 perm   1 sec   (6685 perm/sec)   p_kst 6.215000e-01   p_cons 8.576000e-01   p_joint 9.948000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R46.2_934_10000_0.6215_0.8576_0.9948.png
                gene_name: TAS2R46
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 88 percent done.
TATDN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.884176e-02	ci left: 1.903270e-01	ci right 2.060492e-01	k: 1981	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
TATDN3   10000 perm   2 sec   (6520 perm/sec)   p_kst 7.080000e-02   p_cons 7.504000e-01   p_joint 1.981000e-01

Joint ci ratio: 6.083705e-02	ci left: 1.666447e-01	ci right 1.771509e-01	k: 3437	n:20000
Cons ci ratio: 1.608640e-02	ci left: 7.419726e-01	ci right 7.540553e-01	k: 14961	n:20000
KS ci ratio: 1.023338e-01	ci left: 6.484186e-02	ci right 7.188426e-02	k: 1366	n:20000
TATDN3   20000 perm   4 sec   (5701 perm/sec)   p_kst 6.830000e-02   p_cons 7.480500e-01   p_joint 1.718500e-01

Joint ci ratio: 4.552963e-02	ci left: 1.936026e-01	ci right 2.026559e-01	k: 5943	n:30000
Cons ci ratio: 1.299807e-02	ci left: 7.470388e-01	ci right 7.568457e-01	k: 22559	n:30000
KS ci ratio: 8.155625e-02	ci left: 6.857660e-02	ci right 7.444004e-02	k: 2144	n:30000
TATDN3   30000 perm   6 sec   (5404 perm/sec)   p_kst 7.146667e-02   p_cons 7.519667e-01   p_joint 1.981000e-01

Outputting figure to mutsig2_images.part000000000171/TATDN3.2_886_30000_0.071467_0.75197_0.1981.png
                gene_name: TATDN3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 90 percent done.
TAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
TAZ   10000 perm   1 sec   (6713 perm/sec)   p_kst 6.315000e-01   p_cons 2.740000e-01   p_joint 8.779000e-01

Outputting figure to mutsig2_images.part000000000171/TAZ.2_923_10000_0.6315_0.274_0.8779.png
                gene_name: TAZ
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 92 percent done.
TBC1D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
TBC1D14   10000 perm   2 sec   (5889 perm/sec)   p_kst 4.060000e-01   p_cons 2.405000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TBC1D14.2_2141_10000_0.406_0.2405_1.png
                gene_name: TBC1D14
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TBC1D22A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
TBC1D22A   10000 perm   2 sec   (6422 perm/sec)   p_kst 6.666000e-01   p_cons 9.452000e-01   p_joint 9.750000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D22A.2_1606_10000_0.6666_0.9452_0.975.png
                gene_name: TBC1D22A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 96 percent done.
TBC1D23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
Cons ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
KS ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
TBC1D23   10000 perm   2 sec   (5688 perm/sec)   p_kst 1.948000e-01   p_cons 2.064000e-01   p_joint 9.827000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D23.2_2127_10000_0.1948_0.2064_0.9827.png
                gene_name: TBC1D23
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
TBC1D24
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000171
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 171 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 4422604: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000172> was used as the working directory.
Started at Wed Oct 24 18:09:14 2012
Results reported at Wed Oct 24 18:22:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000172.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000172.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 172  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000172.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    944.67 sec.
    Max Memory :      5318 MB
    Max Swap   :      7656 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
172
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 172
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 172: processing genes 15471 - 15561
Calculating significance of each gene.
Using projection method.
15471	TBC1D4	9.987254e-01
15472	TBC1D5	1.238260e-01
15473	TBC1D7	3.312932e-01
15474	TBC1D8	1
15475	TBC1D8B	7.891498e-01
15476	TBC1D9	9.936517e-01
15477	TBC1D9B	1
15478	TBCA	3.334358e-01
15479	TBCB	1
15480	TBCC	6.755187e-01
15481	TBCCD1	8.478779e-01
15482	TBCD	7.056078e-01
15483	TBCE	8.653738e-01
15484	TBCEL	1
15485	TBCK	9.638614e-01
15486	TBK1	8.943809e-01
15487	TBKBP1	1
15488	TBL1X	1
15489	TBL1XR1	2.550345e-01
15490	TBL1Y	1
15491	TBL2	1
15492	TBL3	9.946593e-01
15493	TBP	1
15494	TBPL1	4.802983e-01
15495	TBPL2	2.247794e-01
15496	TBR1	2.260170e-02
15497	TBRG1	1
15498	TBRG4	8.365153e-01
15499	TBX1	6.002583e-01
15500	TBX10	2.555343e-01
15501	TBX15	1.321953e-05
15502	TBX18	2.293030e-03
15503	TBX19	3.393713e-01
15504	TBX2	8.995503e-01
15505	TBX20	6.645780e-01
15506	TBX21	3.821934e-03
15507	TBX22	4.853568e-07
15508	TBX3	4.220319e-04
In gene TBX4 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 1480    n = 1	mu =   3.01e-07
15509	TBX4	7.145314e-02
15510	TBX5	1.552658e-04
15511	TBX6	1
15512	TBXA2R	1
15513	TBXAS1	8.356976e-02
15514	TC2N	2.775245e-01
15515	TCAP	1
15516	TCEA1	1
15517	TCEA2	1.324212e-01
15518	TCEA3	3.378007e-01
15519	TCEAL1	1
15520	TCEAL2	5.191304e-01
15521	TCEAL3	1.969073e-01
15522	TCEAL4	1
15523	TCEAL5	8.106353e-04
15524	TCEAL6	2.903428e-01
15525	TCEAL7	1
15526	TCEAL8	4.232510e-01
15527	TCEANC	4.940180e-01
15528	TCEB1	3.709534e-01
15529	TCEB2	1
15530	TCEB3	9.945154e-01
15531	TCEB3B	9.215154e-01
15532	TCEB3C	9.129141e-01
15533	TCEB3CL	1
15534	TCERG1	9.875733e-01
In gene TCERG1L the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 749     n = 1	mu =   6.02e-07
15535	TCERG1L	2.766328e-02
15536	TCF12	6.209445e-01
15537	TCF19	1
15538	TCF20	8.840597e-01
15539	TCF21	1.325381e-01
15540	TCF23	9.912576e-03
15541	TCF25	8.513967e-01
15542	TCF3	4.372326e-01
15543	TCF4	2.425635e-01
15544	TCF7	8.410267e-01
15545	TCF7L1	7.409806e-01
15546	TCF7L2	7.860953e-01
15547	TCFL5	7.232875e-01
15548	TCHH	9.966680e-01
15549	TCHHL1	5.010852e-01
15550	TCHP	6.916558e-01
15551	TCIRG1	1
15552	TCL1A	1.559376e-01
15553	TCL1B	3.354955e-01
15554	TCN1	1
15555	TCN2	8.765238e-01
15556	TCOF1	9.767827e-01
15557	TCP1	8.758653e-01
15558	TCP10	4.039371e-01
15559	TCP10L	1
15560	TCP10L2	4.568577e-01
15561	TCP11	4.440474e-01
Done

Running MutSig 2:
Scatter job 172: processing genes 15471 - 15561
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TCHH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
Cons ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
TCHH   10000 perm   3 sec   (2975 perm/sec)   p_kst 4.190000e-01   p_cons 5.967000e-01   p_joint 5.932000e-01

Outputting figure to mutsig2_images.part000000000172/TCHH.22_5840_10000_0.419_0.5967_0.5932.png
                gene_name: TCHH
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 2 percent done.
TBX22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
TBX22   10000 perm   2 sec   (4552 perm/sec)   p_kst 8.512000e-01   p_cons 7.170000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBX22.16_1595_10000_0.8512_0.717_1.png
                gene_name: TBX22
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
TBX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
Cons ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
TBX15   10000 perm   2 sec   (4684 perm/sec)   p_kst 4.233000e-01   p_cons 1.276000e-01   p_joint 2.391000e-01

Joint ci ratio: 4.582710e-02	ci left: 2.616721e-01	ci right 2.739954e-01	k: 5356	n:20000
Cons ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
KS ci ratio: 3.224154e-02	ci left: 4.180853e-01	ci right 4.318365e-01	k: 8499	n:20000
TBX15   20000 perm   5 sec   (4241 perm/sec)   p_kst 4.249500e-01   p_cons 1.243000e-01   p_joint 2.678000e-01

Outputting figure to mutsig2_images.part000000000172/TBX15.15_1519_20000_0.42495_0.1243_0.2678.png
                gene_name: TBX15
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 5 percent done.
TBX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
TBX5   10000 perm   3 sec   (3925 perm/sec)   p_kst 3.520000e-01   p_cons 2.626000e-01   p_joint 5.237000e-01

Outputting figure to mutsig2_images.part000000000172/TBX5.13_1656_10000_0.352_0.2626_0.5237.png
                gene_name: TBX5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 7 percent done.
TCHHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
KS ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
TCHHL1   10000 perm   2 sec   (4017 perm/sec)   p_kst 4.956000e-01   p_cons 5.778000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000172/TCHHL1.13_2723_10000_0.4956_0.5778_0.6564.png
                gene_name: TCHHL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 9 percent done.
TBX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
TBX18   10000 perm   2 sec   (4867 perm/sec)   p_kst 6.177000e-01   p_cons 1.196000e-01   p_joint 4.281000e-01

Joint ci ratio: 3.711110e-02	ci left: 3.514016e-01	ci right 3.647397e-01	k: 7161	n:20000
Cons ci ratio: 7.672330e-02	ci left: 1.110031e-01	ci right 1.199090e-01	k: 2308	n:20000
KS ci ratio: 2.142163e-02	ci left: 6.193014e-01	ci right 6.327620e-01	k: 12521	n:20000
TBX18   20000 perm   5 sec   (4321 perm/sec)   p_kst 6.260500e-01   p_cons 1.154000e-01   p_joint 3.580500e-01

Outputting figure to mutsig2_images.part000000000172/TBX18.11_1856_20000_0.62605_0.1154_0.35805.png
                gene_name: TBX18
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 11 percent done.
TBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
Cons ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
KS ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
TBX3   10000 perm   2 sec   (4507 perm/sec)   p_kst 2.634000e-01   p_cons 2.760000e-01   p_joint 2.247000e-01

Outputting figure to mutsig2_images.part000000000172/TBX3.10_2264_10000_0.2634_0.276_0.2247.png
                gene_name: TBX3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
TCEB3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.361522e-02	ci left: 8.861619e-01	ci right 8.984085e-01	k: 8924	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
TCEB3B   10000 perm   2 sec   (4727 perm/sec)   p_kst 6.581000e-01   p_cons 9.357000e-01   p_joint 8.924000e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3B.10_2266_10000_0.6581_0.9357_0.8924.png
                gene_name: TCEB3B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 14 percent done.
TBC1D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
Cons ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
KS ci ratio: 3.499718e-02	ci left: 5.465975e-01	ci right 5.661697e-01	k: 5564	n:10000
TBC1D5   10000 perm   2 sec   (4259 perm/sec)   p_kst 5.564000e-01   p_cons 3.097000e-01   p_joint 5.501000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D5.9_2538_10000_0.5564_0.3097_0.5501.png
                gene_name: TBC1D5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 16 percent done.
TCF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.469016e-02	ci left: 8.703006e-01	ci right 8.832791e-01	k: 8769	n:10000
Cons ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
KS ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
TCF4   10000 perm   2 sec   (4885 perm/sec)   p_kst 6.858000e-01   p_cons 4.715000e-01   p_joint 8.769000e-01

Outputting figure to mutsig2_images.part000000000172/TCF4.9_2088_10000_0.6858_0.4715_0.8769.png
                gene_name: TCF4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 18 percent done.
TBR1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
Cons ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
KS ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
TBR1   10000 perm   2 sec   (4844 perm/sec)   p_kst 4.211000e-01   p_cons 2.150000e-02   p_joint 8.870000e-02

Joint ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
Cons ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
KS ci ratio: 3.254684e-02	ci left: 4.134960e-01	ci right 4.272272e-01	k: 8407	n:20000
TBR1   20000 perm   5 sec   (4326 perm/sec)   p_kst 4.203500e-01   p_cons 2.355000e-02   p_joint 1.151000e-01

Joint ci ratio: 8.997877e-02	ci left: 5.681660e-02	ci right 6.220243e-02	k: 1784	n:30000
Cons ci ratio: 1.540268e-01	ci left: 1.950355e-02	ci right 2.279010e-02	k: 633	n:30000
KS ci ratio: 2.663800e-02	ci left: 4.136078e-01	ci right 4.248078e-01	k: 12576	n:30000
TBR1   30000 perm   7 sec   (4110 perm/sec)   p_kst 4.192000e-01   p_cons 2.110000e-02   p_joint 5.946667e-02

Joint ci ratio: 6.872084e-02	ci left: 7.263406e-02	ci right 7.782781e-02	k: 3008	n:40000
Cons ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
KS ci ratio: 2.305651e-02	ci left: 4.146325e-01	ci right 4.243291e-01	k: 16779	n:40000
TBR1   40000 perm   10 sec   (3999 perm/sec)   p_kst 4.194750e-01   p_cons 2.110000e-02   p_joint 7.520000e-02

Joint ci ratio: 6.690781e-02	ci left: 6.208660e-02	ci right 6.640416e-02	k: 3211	n:50000
Cons ci ratio: 1.195214e-01	ci left: 1.979990e-02	ci right 2.233613e-02	k: 1052	n:50000
KS ci ratio: 2.080806e-02	ci left: 4.107960e-01	ci right 4.194538e-01	k: 20756	n:50000
TBR1   50000 perm   13 sec   (3900 perm/sec)   p_kst 4.151200e-01   p_cons 2.104000e-02   p_joint 6.422000e-02

Joint ci ratio: 4.145151e-02	ci left: 1.270213e-01	ci right 1.324145e-01	k: 7782	n:60000
Cons ci ratio: 9.475425e-02	ci left: 2.641769e-02	ci right 2.906159e-02	k: 1663	n:60000
KS ci ratio: 1.860182e-02	ci left: 4.213561e-01	ci right 4.292844e-01	k: 25519	n:60000
TBR1   60000 perm   16 sec   (3812 perm/sec)   p_kst 4.253167e-01   p_cons 2.771667e-02   p_joint 1.297000e-01

Outputting figure to mutsig2_images.part000000000172/TBR1.7_2073_60000_0.42532_0.027717_0.1297.png
                gene_name: TBR1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 19 percent done.
TBX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
TBX21   10000 perm   2 sec   (5056 perm/sec)   p_kst 9.250000e-02   p_cons 5.586000e-01   p_joint 1.630000e-01

Joint ci ratio: 6.014120e-02	ci left: 1.699047e-01	ci right 1.804899e-01	k: 3503	n:20000
Cons ci ratio: 2.467571e-02	ci left: 5.509340e-01	ci right 5.647492e-01	k: 11157	n:20000
KS ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
TBX21   20000 perm   4 sec   (4509 perm/sec)   p_kst 9.250000e-02   p_cons 5.578500e-01   p_joint 1.751500e-01

Outputting figure to mutsig2_images.part000000000172/TBX21.8_1632_20000_0.0925_0.55785_0.17515.png
                gene_name: TBX21
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 21 percent done.
TBX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
Cons ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
KS ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
TBX4   10000 perm   2 sec   (5094 perm/sec)   p_kst 4.872000e-01   p_cons 2.842000e-01   p_joint 5.574000e-01

Outputting figure to mutsig2_images.part000000000172/TBX4.8_1670_10000_0.4872_0.2842_0.5574.png
                gene_name: TBX4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 23 percent done.
TCF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
Cons ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
KS ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
TCF20   10000 perm   3 sec   (3601 perm/sec)   p_kst 7.397000e-01   p_cons 2.879000e-01   p_joint 7.258000e-01

Outputting figure to mutsig2_images.part000000000172/TCF20.8_5921_10000_0.7397_0.2879_0.7258.png
                gene_name: TCF20
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 25 percent done.
TBC1D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
Cons ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
KS ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
TBC1D9   10000 perm   2 sec   (4024 perm/sec)   p_kst 2.656000e-01   p_cons 2.022000e-01   p_joint 2.675000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D9.7_3885_10000_0.2656_0.2022_0.2675.png
                gene_name: TBC1D9
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 26 percent done.
TBCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
Cons ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
TBCD   10000 perm   2 sec   (4459 perm/sec)   p_kst 1.082000e-01   p_cons 5.453000e-01   p_joint 2.008000e-01

Joint ci ratio: 5.096823e-02	ci left: 2.223986e-01	ci right 2.340805e-01	k: 4564	n:20000
Cons ci ratio: 2.451357e-02	ci left: 5.541889e-01	ci right 5.679933e-01	k: 11222	n:20000
KS ci ratio: 7.992864e-02	ci left: 1.030430e-01	ci right 1.116715e-01	k: 2146	n:20000
TBCD   20000 perm   5 sec   (3996 perm/sec)   p_kst 1.073000e-01   p_cons 5.611000e-01   p_joint 2.282000e-01

Outputting figure to mutsig2_images.part000000000172/TBCD.7_3735_20000_0.1073_0.5611_0.2282.png
                gene_name: TBCD
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
TBC1D8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
KS ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
TBC1D8B   10000 perm   2 sec   (4567 perm/sec)   p_kst 8.031000e-01   p_cons 7.650000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBC1D8B.6_3513_10000_0.8031_0.765_1.png
                gene_name: TBC1D8B
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
TBX20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TBX20   10000 perm   2 sec   (5258 perm/sec)   p_kst 1   p_cons 9.312000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBX20.6_1377_10000_1_0.9312_1.png
                gene_name: TBX20
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
TBXAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 1.288106e-02	ci left: 8.966209e-01	ci right 9.083435e-01	k: 9026	n:10000
TBXAS1   10000 perm   2 sec   (5167 perm/sec)   p_kst 9.026000e-01   p_cons 1.172000e-01   p_joint 3.072000e-01

Joint ci ratio: 3.863647e-02	ci left: 3.331847e-01	ci right 3.463619e-01	k: 6795	n:20000
Cons ci ratio: 7.196004e-02	ci left: 1.245313e-01	ci right 1.338768e-01	k: 2583	n:20000
KS ci ratio: 9.307455e-03	ci left: 8.944352e-01	ci right 9.028485e-01	k: 17974	n:20000
TBXAS1   20000 perm   4 sec   (4590 perm/sec)   p_kst 8.987000e-01   p_cons 1.291500e-01   p_joint 3.397500e-01

Outputting figure to mutsig2_images.part000000000172/TBXAS1.6_1799_20000_0.8987_0.12915_0.33975.png
                gene_name: TBXAS1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
TCEAL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
Cons ci ratio: 9.979928e-03	ci left: 9.343371e-01	ci right 9.438051e-01	k: 9392	n:10000
KS ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
TCEAL5   10000 perm   2 sec   (6033 perm/sec)   p_kst 3.108000e-01   p_cons 9.392000e-01   p_joint 4.898000e-01

Outputting figure to mutsig2_images.part000000000172/TCEAL5.6_625_10000_0.3108_0.9392_0.4898.png
                gene_name: TCEAL5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 35 percent done.
TBL1XR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
KS ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
TBL1XR1   10000 perm   2 sec   (5156 perm/sec)   p_kst 6.939000e-01   p_cons 8.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBL1XR1.5_1601_10000_0.6939_0.8982_1.png
                gene_name: TBL1XR1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
TCEB3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
Cons ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
TCEB3C   10000 perm   2 sec   (4707 perm/sec)   p_kst 1.040000e-02   p_cons 4.301000e-01   p_joint 3.570000e-02

Joint ci ratio: 1.321329e-01	ci left: 3.935861e-02	ci right 4.497548e-02	k: 842	n:20000
Cons ci ratio: 3.330296e-02	ci left: 4.023743e-01	ci right 4.160521e-01	k: 8184	n:20000
KS ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
TCEB3C   20000 perm   5 sec   (4247 perm/sec)   p_kst 9.950000e-03   p_cons 4.092000e-01   p_joint 4.210000e-02

Joint ci ratio: 1.174521e-01	ci left: 3.369361e-02	ci right 3.793023e-02	k: 1073	n:30000
Cons ci ratio: 2.708604e-02	ci left: 4.055244e-01	ci right 4.166928e-01	k: 12333	n:30000
KS ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
TCEB3C   30000 perm   7 sec   (4066 perm/sec)   p_kst 1.023333e-02   p_cons 4.111000e-01   p_joint 3.576667e-02

Joint ci ratio: 1.221502e-01	ci left: 2.356482e-02	ci right 2.665465e-02	k: 1003	n:40000
Cons ci ratio: 2.356934e-02	ci left: 4.039766e-01	ci right 4.136367e-01	k: 16352	n:40000
KS ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
TCEB3C   40000 perm   10 sec   (3940 perm/sec)   p_kst 1.035000e-02   p_cons 4.088000e-01   p_joint 2.507500e-02

Joint ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
Cons ci ratio: 2.112756e-02	ci left: 4.034281e-01	ci right 4.120626e-01	k: 20387	n:50000
KS ci ratio: 1.684066e-01	ci left: 9.816677e-03	ci right 1.164080e-02	k: 535	n:50000
TCEB3C   50000 perm   13 sec   (3843 perm/sec)   p_kst 1.070000e-02   p_cons 4.077400e-01   p_joint 2.794000e-02

Joint ci ratio: 1.022716e-01	ci left: 2.267635e-02	ci right 2.513666e-02	k: 1433	n:60000
Cons ci ratio: 1.925388e-02	ci left: 4.046295e-01	ci right 4.125126e-01	k: 24514	n:60000
KS ci ratio: 1.531571e-01	ci left: 9.972321e-03	ci right 1.164217e-02	k: 647	n:60000
TCEB3C   60000 perm   16 sec   (3766 perm/sec)   p_kst 1.078333e-02   p_cons 4.085667e-01   p_joint 2.388333e-02

Joint ci ratio: 8.639201e-02	ci left: 2.733571e-02	ci right 2.981786e-02	k: 1999	n:70000
Cons ci ratio: 1.783028e-02	ci left: 4.047982e-01	ci right 4.120951e-01	k: 28591	n:70000
KS ci ratio: 1.427536e-01	ci left: 9.895892e-03	ci right 1.143079e-02	k: 745	n:70000
TCEB3C   70000 perm   19 sec   (3691 perm/sec)   p_kst 1.064286e-02   p_cons 4.084429e-01   p_joint 2.855714e-02

Joint ci ratio: 8.809910e-02	ci left: 2.308502e-02	ci right 2.522468e-02	k: 1931	n:80000
Cons ci ratio: 1.664705e-02	ci left: 4.059522e-01	ci right 4.127793e-01	k: 32749	n:80000
KS ci ratio: 1.340571e-01	ci left: 9.865639e-03	ci right 1.129519e-02	k: 845	n:80000
TCEB3C   80000 perm   22 sec   (3628 perm/sec)   p_kst 1.056250e-02   p_cons 4.093625e-01   p_joint 2.413750e-02

Joint ci ratio: 8.416848e-02	ci left: 2.254190e-02	ci right 2.453341e-02	k: 2117	n:90000
Cons ci ratio: 1.501798e-02	ci left: 4.276060e-01	ci right 4.340874e-01	k: 38776	n:90000
KS ci ratio: 1.268457e-01	ci left: 9.833565e-03	ci right 1.117604e-02	k: 944	n:90000
TCEB3C   90000 perm   25 sec   (3566 perm/sec)   p_kst 1.048889e-02   p_cons 4.308444e-01   p_joint 2.352222e-02

Joint ci ratio: 7.825217e-02	ci left: 2.352121e-02	ci right 2.544651e-02	k: 2447	n:100000
Cons ci ratio: 1.424456e-02	ci left: 4.278678e-01	ci right 4.340162e-01	k: 43094	n:100000
KS ci ratio: 1.214519e-01	ci left: 9.683460e-03	ci right 1.094519e-02	k: 1030	n:100000
TCEB3C   100000 perm   29 sec   (3508 perm/sec)   p_kst 1.030000e-02   p_cons 4.309400e-01   p_joint 2.447000e-02

Joint ci ratio: 6.956763e-02	ci left: 2.707769e-02	ci right 2.903821e-02	k: 3085	n:110000
Cons ci ratio: 1.358631e-02	ci left: 4.278437e-01	ci right 4.337054e-01	k: 47385	n:110000
KS ci ratio: 1.161678e-01	ci left: 9.649932e-03	ci right 1.084883e-02	k: 1126	n:110000
TCEB3C   110000 perm   32 sec   (3454 perm/sec)   p_kst 1.023636e-02   p_cons 4.307727e-01   p_joint 2.804545e-02

Joint ci ratio: 7.248573e-02	ci left: 2.292857e-02	ci right 2.466121e-02	k: 2854	n:120000
Cons ci ratio: 1.301604e-02	ci left: 4.276627e-01	ci right 4.332740e-01	k: 51656	n:120000
KS ci ratio: 1.114724e-01	ci left: 9.631090e-03	ci right 1.077610e-02	k: 1223	n:120000
TCEB3C   120000 perm   35 sec   (3398 perm/sec)   p_kst 1.019167e-02   p_cons 4.304667e-01   p_joint 2.378333e-02

Joint ci ratio: 7.442774e-02	ci left: 2.011414e-02	ci right 2.167657e-02	k: 2715	n:130000
Cons ci ratio: 1.250889e-02	ci left: 4.276370e-01	ci right 4.330276e-01	k: 55943	n:130000
KS ci ratio: 1.066935e-01	ci left: 9.728300e-03	ci right 1.083217e-02	k: 1335	n:130000
TCEB3C   130000 perm   39 sec   (3347 perm/sec)   p_kst 1.026923e-02   p_cons 4.303308e-01   p_joint 2.088462e-02

Joint ci ratio: 6.673856e-02	ci left: 2.324675e-02	ci right 2.485876e-02	k: 3366	n:140000
Cons ci ratio: 1.204743e-02	ci left: 4.279970e-01	ci right 4.331916e-01	k: 60283	n:140000
KS ci ratio: 1.026242e-01	ci left: 9.784674e-03	ci right 1.085004e-02	k: 1443	n:140000
TCEB3C   140000 perm   42 sec   (3300 perm/sec)   p_kst 1.030714e-02   p_cons 4.305929e-01   p_joint 2.404286e-02

Joint ci ratio: 6.491483e-02	ci left: 2.296234e-02	ci right 2.450947e-02	k: 3559	n:150000
Cons ci ratio: 1.162406e-02	ci left: 4.287118e-01	ci right 4.337309e-01	k: 64683	n:150000
KS ci ratio: 9.905201e-02	ci left: 9.821218e-03	ci right 1.085118e-02	k: 1549	n:150000
TCEB3C   150000 perm   46 sec   (3253 perm/sec)   p_kst 1.032667e-02   p_cons 4.312200e-01   p_joint 2.372667e-02

Outputting figure to mutsig2_images.part000000000172/TCEB3C.5_3288_150000_0.010327_0.43122_0.023727.png
                gene_name: TCEB3C
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 39 percent done.
TCF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
TCF12   10000 perm   2 sec   (4912 perm/sec)   p_kst 5.981000e-01   p_cons 5.413000e-01   p_joint 7.119000e-01

Outputting figure to mutsig2_images.part000000000172/TCF12.5_2270_10000_0.5981_0.5413_0.7119.png
                gene_name: TCF12
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 40 percent done.
TCF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
Cons ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
KS ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
TCF23   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.377000e-01   p_cons 9.040000e-01   p_joint 2.731000e-01

Outputting figure to mutsig2_images.part000000000172/TCF23.5_657_10000_0.1377_0.904_0.2731.png
                gene_name: TCF23
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 42 percent done.
TCP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
Cons ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
KS ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
TCP11   10000 perm   2 sec   (5485 perm/sec)   p_kst 4.516000e-01   p_cons 8.319000e-01   p_joint 8.576000e-01

Outputting figure to mutsig2_images.part000000000172/TCP11.5_1645_10000_0.4516_0.8319_0.8576.png
                gene_name: TCP11
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 44 percent done.
TBC1D7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
Cons ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
KS ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
TBC1D7   10000 perm   2 sec   (5936 perm/sec)   p_kst 5.212000e-01   p_cons 7.732000e-01   p_joint 6.768000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D7.4_910_10000_0.5212_0.7732_0.6768.png
                gene_name: TBC1D7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 46 percent done.
TBRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861067e-02	ci left: 4.976503e-01	ci right 5.173453e-01	k: 5075	n:10000
Cons ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
KS ci ratio: 3.482738e-02	ci left: 5.490022e-01	ci right 5.685635e-01	k: 5588	n:10000
TBRG4   10000 perm   2 sec   (5225 perm/sec)   p_kst 5.588000e-01   p_cons 2.767000e-01   p_joint 5.075000e-01

Outputting figure to mutsig2_images.part000000000172/TBRG4.4_1936_10000_0.5588_0.2767_0.5075.png
                gene_name: TBRG4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 47 percent done.
TBX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
Cons ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
KS ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
TBX10   10000 perm   2 sec   (5772 perm/sec)   p_kst 4.646000e-01   p_cons 6.999000e-01   p_joint 6.392000e-01

Outputting figure to mutsig2_images.part000000000172/TBX10.4_1190_10000_0.4646_0.6999_0.6392.png
                gene_name: TBX10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 49 percent done.
TC2N
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
Cons ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
KS ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
TC2N   10000 perm   2 sec   (5362 perm/sec)   p_kst 2.283000e-01   p_cons 5.625000e-01   p_joint 4.570000e-01

Outputting figure to mutsig2_images.part000000000172/TC2N.4_1517_10000_0.2283_0.5625_0.457.png
                gene_name: TC2N
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 51 percent done.
TCEA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.231198e-02	ci left: 7.467503e-01	ci right 7.637008e-01	k: 7553	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
TCEA2   10000 perm   2 sec   (5816 perm/sec)   p_kst 7.944000e-01   p_cons 7.553000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCEA2.4_940_10000_0.7944_0.7553_1.png
                gene_name: TCEA2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TCERG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
TCERG1L   10000 perm   2 sec   (5427 perm/sec)   p_kst 4.933000e-01   p_cons 5.000000e-02   p_joint 1.602000e-01

Joint ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
Cons ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
KS ci ratio: 2.835859e-02	ci left: 4.815994e-01	ci right 4.955039e-01	k: 9771	n:20000
TCERG1L   20000 perm   4 sec   (4808 perm/sec)   p_kst 4.885500e-01   p_cons 5.140000e-02   p_joint 1.835500e-01

Joint ci ratio: 6.233483e-02	ci left: 1.128244e-01	ci right 1.201167e-01	k: 3493	n:30000
Cons ci ratio: 1.003151e-01	ci left: 4.599867e-02	ci right 5.088926e-02	k: 1452	n:30000
KS ci ratio: 2.315606e-02	ci left: 4.828616e-01	ci right 4.942073e-01	k: 14656	n:30000
TCERG1L   30000 perm   7 sec   (4579 perm/sec)   p_kst 4.885333e-01   p_cons 4.840000e-02   p_joint 1.164333e-01

Joint ci ratio: 4.935422e-02	ci left: 1.328526e-01	ci right 1.396003e-01	k: 5448	n:40000
Cons ci ratio: 8.959010e-02	ci left: 4.362508e-02	ci right 4.774120e-02	k: 1826	n:40000
KS ci ratio: 1.998923e-02	ci left: 4.852394e-01	ci right 4.950620e-01	k: 19606	n:40000
TCERG1L   40000 perm   9 sec   (4444 perm/sec)   p_kst 4.901500e-01   p_cons 4.565000e-02   p_joint 1.362000e-01

Outputting figure to mutsig2_images.part000000000172/TCERG1L.4_1809_40000_0.49015_0.04565_0.1362.png
                gene_name: TCERG1L
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 54 percent done.
TCHP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
Cons ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
KS ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
TCHP   10000 perm   2 sec   (5560 perm/sec)   p_kst 7.524000e-01   p_cons 4.471000e-01   p_joint 8.141000e-01

Outputting figure to mutsig2_images.part000000000172/TCHP.4_1545_10000_0.7524_0.4471_0.8141.png
                gene_name: TCHP
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
TCOF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
TCOF1   10000 perm   2 sec   (4168 perm/sec)   p_kst 8.858000e-01   p_cons 1.659000e-01   p_joint 4.264000e-01

Outputting figure to mutsig2_images.part000000000172/TCOF1.4_4596_10000_0.8858_0.1659_0.4264.png
                gene_name: TCOF1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 58 percent done.
TBC1D8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
Cons ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
KS ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
TBC1D8   10000 perm   2 sec   (4804 perm/sec)   p_kst 2.821000e-01   p_cons 2.162000e-01   p_joint 4.181000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D8.3_3503_10000_0.2821_0.2162_0.4181.png
                gene_name: TBC1D8
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 60 percent done.
TBCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
Cons ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
KS ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
TBCE   10000 perm   2 sec   (5917 perm/sec)   p_kst 6.057000e-01   p_cons 7.422000e-01   p_joint 7.687000e-01

Outputting figure to mutsig2_images.part000000000172/TBCE.3_1648_10000_0.6057_0.7422_0.7687.png
                gene_name: TBCE
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 61 percent done.
TBCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
Cons ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
KS ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
TBCK   10000 perm   2 sec   (5553 perm/sec)   p_kst 1.015000e-01   p_cons 7.990000e-02   p_joint 8.550000e-02

Joint ci ratio: 8.404411e-02	ci left: 9.396221e-02	ci right 1.022551e-01	k: 1961	n:20000
Cons ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
KS ci ratio: 8.345583e-02	ci left: 9.518871e-02	ci right 1.035282e-01	k: 1986	n:20000
TBCK   20000 perm   4 sec   (4952 perm/sec)   p_kst 9.930000e-02   p_cons 7.960000e-02   p_joint 9.805000e-02

Outputting figure to mutsig2_images.part000000000172/TBCK.3_2782_20000_0.0993_0.0796_0.09805.png
                gene_name: TBCK
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 63 percent done.
TBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
TBL2   10000 perm   2 sec   (6066 perm/sec)   p_kst 3.321000e-01   p_cons 4.831000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000172/TBL2.3_1372_10000_0.3321_0.4831_0.4638.png
                gene_name: TBL2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 65 percent done.
TBPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.199829e-02	ci left: 9.087451e-01	ci right 9.198122e-01	k: 9144	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
TBPL2   10000 perm   2 sec   (6036 perm/sec)   p_kst 6.305000e-01   p_cons 5.171000e-01   p_joint 9.144000e-01

Outputting figure to mutsig2_images.part000000000172/TBPL2.3_1156_10000_0.6305_0.5171_0.9144.png
                gene_name: TBPL2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 67 percent done.
TBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
TBX1   10000 perm   2 sec   (5688 perm/sec)   p_kst 7.200000e-02   p_cons 2.820000e-02   p_joint 4.820000e-02

Joint ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
Cons ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
KS ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
TBX1   20000 perm   4 sec   (4995 perm/sec)   p_kst 7.200000e-02   p_cons 2.820000e-02   p_joint 2.875000e-02

Joint ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
Cons ci ratio: 1.347532e-01	ci left: 2.558194e-02	ci right 2.931033e-02	k: 822	n:30000
KS ci ratio: 8.127097e-02	ci left: 6.903446e-02	ci right 7.491542e-02	k: 2158	n:30000
TBX1   30000 perm   6 sec   (4737 perm/sec)   p_kst 7.193333e-02   p_cons 2.740000e-02   p_joint 3.086667e-02

Joint ci ratio: 1.191993e-01	ci left: 2.475374e-02	ci right 2.791554e-02	k: 1052	n:40000
Cons ci ratio: 1.211635e-01	ci left: 2.395294e-02	ci right 2.706647e-02	k: 1019	n:40000
KS ci ratio: 7.103208e-02	ci left: 6.823140e-02	ci right 7.328113e-02	k: 2829	n:40000
TBX1   40000 perm   9 sec   (4567 perm/sec)   p_kst 7.072500e-02   p_cons 2.547500e-02   p_joint 2.630000e-02

Joint ci ratio: 1.195214e-01	ci left: 1.979990e-02	ci right 2.233613e-02	k: 1052	n:50000
Cons ci ratio: 1.073399e-01	ci left: 2.458376e-02	ci right 2.739164e-02	k: 1298	n:50000
KS ci ratio: 6.361544e-02	ci left: 6.833030e-02	ci right 7.283970e-02	k: 3528	n:50000
TBX1   50000 perm   11 sec   (4430 perm/sec)   p_kst 7.056000e-02   p_cons 2.596000e-02   p_joint 2.104000e-02

Joint ci ratio: 1.054410e-01	ci left: 2.132816e-02	ci right 2.371834e-02	k: 1350	n:60000
Cons ci ratio: 9.778818e-02	ci left: 2.480639e-02	ci right 2.737307e-02	k: 1564	n:60000
KS ci ratio: 5.799031e-02	ci left: 6.871082e-02	ci right 7.283081e-02	k: 4245	n:60000
TBX1   60000 perm   14 sec   (4326 perm/sec)   p_kst 7.075000e-02   p_cons 2.606667e-02   p_joint 2.250000e-02

Joint ci ratio: 1.085602e-01	ci left: 1.729213e-02	ci right 1.929094e-02	k: 1279	n:70000
Cons ci ratio: 9.047926e-02	ci left: 2.493146e-02	ci right 2.730804e-02	k: 1827	n:70000
KS ci ratio: 5.426656e-02	ci left: 6.748581e-02	ci right 7.126427e-02	k: 4855	n:70000
TBX1   70000 perm   17 sec   (4218 perm/sec)   p_kst 6.935714e-02   p_cons 2.610000e-02   p_joint 1.827143e-02

Joint ci ratio: 1.095597e-01	ci left: 1.488641e-02	ci right 1.662397e-02	k: 1259	n:80000
Cons ci ratio: 8.455555e-02	ci left: 2.505514e-02	ci right 2.727940e-02	k: 2092	n:80000
KS ci ratio: 5.074562e-02	ci left: 6.764837e-02	ci right 7.118294e-02	k: 5552	n:80000
TBX1   80000 perm   19 sec   (4130 perm/sec)   p_kst 6.940000e-02   p_cons 2.615000e-02   p_joint 1.573750e-02

Joint ci ratio: 1.066903e-01	ci left: 1.398876e-02	ci right 1.557607e-02	k: 1329	n:90000
Cons ci ratio: 7.999275e-02	ci left: 2.494829e-02	ci right 2.703797e-02	k: 2338	n:90000
KS ci ratio: 4.800104e-02	ci left: 6.733051e-02	ci right 7.065289e-02	k: 6208	n:90000
TBX1   90000 perm   22 sec   (4052 perm/sec)   p_kst 6.897778e-02   p_cons 2.597778e-02   p_joint 1.476667e-02

Joint ci ratio: 9.367504e-02	ci left: 1.640319e-02	ci right 1.802498e-02	k: 1720	n:100000
Cons ci ratio: 7.603648e-02	ci left: 2.490468e-02	ci right 2.688295e-02	k: 2588	n:100000
KS ci ratio: 4.553032e-02	ci left: 6.743662e-02	ci right 7.058843e-02	k: 6900	n:100000
TBX1   100000 perm   25 sec   (3976 perm/sec)   p_kst 6.900000e-02   p_cons 2.588000e-02   p_joint 1.720000e-02

Outputting figure to mutsig2_images.part000000000172/TBX1.3_1826_100000_0.069_0.02588_0.0172.png
                gene_name: TBX1
               theta_stop: 0.094 
                    nperm: 100000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 68 percent done.
TBX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
Cons ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
KS ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
TBX19   10000 perm   2 sec   (6081 perm/sec)   p_kst 1.696000e-01   p_cons 1.110000e-02   p_joint 1.552000e-01

Joint ci ratio: 8.925935e-02	ci left: 8.401093e-02	ci right 9.190934e-02	k: 1758	n:20000
Cons ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
KS ci ratio: 6.210645e-02	ci left: 1.609165e-01	ci right 1.712808e-01	k: 3321	n:20000
TBX19   20000 perm   4 sec   (5276 perm/sec)   p_kst 1.660500e-01   p_cons 1.150000e-02   p_joint 8.790000e-02

Joint ci ratio: 6.293781e-02	ci left: 1.108847e-01	ci right 1.181234e-01	k: 3434	n:30000
Cons ci ratio: 2.129699e-01	ci left: 9.976869e-03	ci right 1.238586e-02	k: 334	n:30000
KS ci ratio: 5.085075e-02	ci left: 1.611126e-01	ci right 1.695523e-01	k: 4959	n:30000
TBX19   30000 perm   6 sec   (5029 perm/sec)   p_kst 1.653000e-01   p_cons 1.113333e-02   p_joint 1.144667e-01

Joint ci ratio: 4.003993e-02	ci left: 1.894152e-01	ci right 1.971793e-01	k: 7731	n:40000
Cons ci ratio: 1.833343e-01	ci left: 1.026340e-02	ci right 1.235845e-02	k: 451	n:40000
KS ci ratio: 4.402353e-02	ci left: 1.617708e-01	ci right 1.690778e-01	k: 6616	n:40000
TBX19   40000 perm   8 sec   (4847 perm/sec)   p_kst 1.654000e-01   p_cons 1.127500e-02   p_joint 1.932750e-01

Joint ci ratio: 4.989056e-02	ci left: 1.071515e-01	ci right 1.126539e-01	k: 5494	n:50000
Cons ci ratio: 1.650166e-01	ci left: 1.023850e-02	ci right 1.209891e-02	k: 557	n:50000
KS ci ratio: 3.951121e-02	ci left: 1.612203e-01	ci right 1.677387e-01	k: 8223	n:50000
TBX19   50000 perm   11 sec   (4703 perm/sec)   p_kst 1.644600e-01   p_cons 1.114000e-02   p_joint 1.098800e-01

Joint ci ratio: 4.157435e-02	ci left: 1.263606e-01	ci right 1.317420e-01	k: 7742	n:60000
Cons ci ratio: 1.505937e-01	ci left: 1.032519e-02	ci right 1.202259e-02	k: 669	n:60000
KS ci ratio: 3.604201e-02	ci left: 1.617070e-01	ci right 1.676588e-01	k: 9880	n:60000
TBX19   60000 perm   13 sec   (4564 perm/sec)   p_kst 1.646667e-01   p_cons 1.115000e-02   p_joint 1.290333e-01

Joint ci ratio: 3.687695e-02	ci left: 1.364167e-01	ci right 1.415561e-01	k: 9728	n:70000
Cons ci ratio: 1.411370e-01	ci left: 1.013021e-02	ci right 1.168216e-02	k: 762	n:70000
KS ci ratio: 3.343414e-02	ci left: 1.613915e-01	ci right 1.668935e-01	k: 11489	n:70000
TBX19   70000 perm   16 sec   (4466 perm/sec)   p_kst 1.641286e-01   p_cons 1.088571e-02   p_joint 1.389714e-01

Joint ci ratio: 3.447339e-02	ci left: 1.367337e-01	ci right 1.415425e-01	k: 11130	n:80000
Cons ci ratio: 1.318689e-01	ci left: 1.020411e-02	ci right 1.165668e-02	k: 873	n:80000
KS ci ratio: 3.134110e-02	ci left: 1.609930e-01	ci right 1.661314e-01	k: 13084	n:80000
TBX19   80000 perm   18 sec   (4378 perm/sec)   p_kst 1.635500e-01   p_cons 1.091250e-02   p_joint 1.391250e-01

Joint ci ratio: 3.339056e-02	ci left: 1.305782e-01	ci right 1.350233e-01	k: 11951	n:90000
Cons ci ratio: 1.253790e-01	ci left: 1.007037e-02	ci right 1.142811e-02	k: 966	n:90000
KS ci ratio: 2.960114e-02	ci left: 1.606585e-01	ci right 1.654966e-01	k: 14676	n:90000
TBX19   90000 perm   21 sec   (4293 perm/sec)   p_kst 1.630667e-01   p_cons 1.073333e-02   p_joint 1.327889e-01

Joint ci ratio: 3.331685e-02	ci left: 1.195704e-01	ci right 1.236315e-01	k: 12159	n:100000
Cons ci ratio: 1.188581e-01	ci left: 1.012007e-02	ci right 1.140855e-02	k: 1075	n:100000
KS ci ratio: 2.804697e-02	ci left: 1.611232e-01	ci right 1.657164e-01	k: 16341	n:100000
TBX19   100000 perm   24 sec   (4212 perm/sec)   p_kst 1.634100e-01   p_cons 1.075000e-02   p_joint 1.215900e-01

Joint ci ratio: 3.033476e-02	ci left: 1.297971e-01	ci right 1.338041e-01	k: 14497	n:110000
Cons ci ratio: 1.128745e-01	ci left: 1.023292e-02	ci right 1.146581e-02	k: 1192	n:110000
KS ci ratio: 2.677040e-02	ci left: 1.609391e-01	ci right 1.653150e-01	k: 17943	n:110000
TBX19   110000 perm   27 sec   (4133 perm/sec)   p_kst 1.631182e-01   p_cons 1.083636e-02   p_joint 1.317909e-01

Joint ci ratio: 2.589138e-02	ci left: 1.583029e-01	ci right 1.624636e-01	k: 19245	n:120000
Cons ci ratio: 1.077955e-01	ci left: 1.031209e-02	ci right 1.149506e-02	k: 1307	n:120000
KS ci ratio: 2.558409e-02	ci left: 1.615276e-01	ci right 1.657220e-01	k: 19634	n:120000
TBX19   120000 perm   30 sec   (4029 perm/sec)   p_kst 1.636167e-01   p_cons 1.089167e-02   p_joint 1.603750e-01

Joint ci ratio: 2.753489e-02	ci left: 1.330167e-01	ci right 1.367381e-01	k: 17533	n:130000
Cons ci ratio: 1.033823e-01	ci left: 1.037264e-02	ci right 1.151088e-02	k: 1421	n:130000
KS ci ratio: 2.461726e-02	ci left: 1.612025e-01	ci right 1.652279e-01	k: 21217	n:130000
TBX19   130000 perm   33 sec   (3956 perm/sec)   p_kst 1.632077e-01   p_cons 1.093077e-02   p_joint 1.348692e-01

Joint ci ratio: 2.683616e-02	ci left: 1.304724e-01	ci right 1.340285e-01	k: 18514	n:140000
Cons ci ratio: 9.933958e-02	ci left: 1.045325e-02	ci right 1.155286e-02	k: 1539	n:140000
KS ci ratio: 2.367176e-02	ci left: 1.618506e-01	ci right 1.657348e-01	k: 22930	n:140000
TBX19   140000 perm   36 sec   (3889 perm/sec)   p_kst 1.637857e-01   p_cons 1.099286e-02   p_joint 1.322429e-01

Outputting figure to mutsig2_images.part000000000172/TBX19.3_1379_140000_0.16379_0.010993_0.13224.png
                gene_name: TBX19
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 70 percent done.
TCEA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
KS ci ratio: 2.953784e-02	ci left: 6.282906e-01	ci right 6.472290e-01	k: 6378	n:10000
TCEA3   10000 perm   2 sec   (6339 perm/sec)   p_kst 6.378000e-01   p_cons 8.754000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCEA3.3_1091_10000_0.6378_0.8754_1.png
                gene_name: TCEA3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TCEAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
TCEAL3   10000 perm   2 sec   (6503 perm/sec)   p_kst 6.980000e-02   p_cons 1.092000e-01   p_joint 2.650000e-02

Joint ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
Cons ci ratio: 7.804776e-02	ci left: 1.076118e-01	ci right 1.164013e-01	k: 2239	n:20000
KS ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
TCEAL3   20000 perm   4 sec   (5706 perm/sec)   p_kst 6.875000e-02   p_cons 1.119500e-01   p_joint 5.405000e-02

Joint ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
Cons ci ratio: 6.459535e-02	ci left: 1.057906e-01	ci right 1.128853e-01	k: 3279	n:30000
KS ci ratio: 8.701088e-02	ci left: 6.060294e-02	ci right 6.614865e-02	k: 1900	n:30000
TCEAL3   30000 perm   6 sec   (5350 perm/sec)   p_kst 6.333333e-02   p_cons 1.093000e-01   p_joint 3.526667e-02

Joint ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
Cons ci ratio: 5.628395e-02	ci left: 1.050978e-01	ci right 1.112092e-01	k: 4325	n:40000
KS ci ratio: 7.561969e-02	ci left: 6.056462e-02	ci right 6.534907e-02	k: 2517	n:40000
TCEAL3   40000 perm   8 sec   (5149 perm/sec)   p_kst 6.292500e-02   p_cons 1.081250e-01   p_joint 2.602500e-02

Joint ci ratio: 7.838119e-02	ci left: 4.576966e-02	ci right 4.952309e-02	k: 2381	n:50000
Cons ci ratio: 5.024048e-02	ci left: 1.058065e-01	ci right 1.112791e-01	k: 5426	n:50000
KS ci ratio: 6.735712e-02	ci left: 6.129916e-02	ci right 6.559170e-02	k: 3171	n:50000
TCEAL3   50000 perm   10 sec   (4993 perm/sec)   p_kst 6.342000e-02   p_cons 1.085200e-01   p_joint 4.762000e-02

Outputting figure to mutsig2_images.part000000000172/TCEAL3.3_607_50000_0.06342_0.10852_0.04762.png
                gene_name: TCEAL3
               theta_stop: 0.078 
                    nperm: 50000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 74 percent done.
TCF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
Cons ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
KS ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
TCF21   10000 perm   1 sec   (6804 perm/sec)   p_kst 8.372000e-01   p_cons 8.495000e-01   p_joint 9.827000e-01

Outputting figure to mutsig2_images.part000000000172/TCF21.3_548_10000_0.8372_0.8495_0.9827.png
                gene_name: TCF21
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
TCF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
KS ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
TCF3   10000 perm   2 sec   (5633 perm/sec)   p_kst 5.227000e-01   p_cons 3.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCF3.3_2268_10000_0.5227_0.3489_1.png
                gene_name: TCF3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TCF7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
Cons ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
KS ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
TCF7L2   10000 perm   2 sec   (5382 perm/sec)   p_kst 9.970000e-02   p_cons 5.124000e-01   p_joint 1.787000e-01

Joint ci ratio: 7.738791e-02	ci left: 1.092827e-01	ci right 1.181299e-01	k: 2273	n:20000
Cons ci ratio: 2.712964e-02	ci left: 5.037459e-01	ci right 5.176510e-01	k: 10214	n:20000
KS ci ratio: 8.322351e-02	ci left: 9.567937e-02	ci right 1.040374e-01	k: 1996	n:20000
TCF7L2   20000 perm   4 sec   (4802 perm/sec)   p_kst 9.980000e-02   p_cons 5.107000e-01   p_joint 1.136500e-01

Outputting figure to mutsig2_images.part000000000172/TCF7L2.3_2142_20000_0.0998_0.5107_0.11365.png
                gene_name: TCF7L2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 79 percent done.
TBC1D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
TBC1D4   10000 perm   2 sec   (4903 perm/sec)   p_kst 7.700000e-03   p_cons 1.260000e-01   p_joint 4.500000e-03

Joint ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
Cons ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
KS ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
TBC1D4   20000 perm   5 sec   (4357 perm/sec)   p_kst 8.750000e-03   p_cons 1.255500e-01   p_joint 4.025000e-02

Joint ci ratio: 6.384387e-02	ci left: 1.080580e-01	ci right 1.152174e-01	k: 3348	n:30000
Cons ci ratio: 5.942636e-02	ci left: 1.228897e-01	ci right 1.304494e-01	k: 3799	n:30000
KS ci ratio: 2.340103e-01	ci left: 8.182088e-03	ci right 1.038119e-02	k: 277	n:30000
TBC1D4   30000 perm   7 sec   (4170 perm/sec)   p_kst 9.233333e-03   p_cons 1.266333e-01   p_joint 1.116000e-01

Joint ci ratio: 6.729248e-02	ci left: 7.556246e-02	ci right 8.084897e-02	k: 3127	n:40000
Cons ci ratio: 5.119145e-02	ci left: 1.245675e-01	ci right 1.311366e-01	k: 5113	n:40000
KS ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
TBC1D4   40000 perm   10 sec   (4046 perm/sec)   p_kst 9.275000e-03   p_cons 1.278250e-01   p_joint 7.817500e-02

Joint ci ratio: 7.598326e-02	ci left: 4.861642e-02	ci right 5.247597e-02	k: 2526	n:50000
Cons ci ratio: 4.556467e-02	ci left: 1.259943e-01	ci right 1.318889e-01	k: 6446	n:50000
KS ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
TBC1D4   50000 perm   13 sec   (3946 perm/sec)   p_kst 9.160000e-03   p_cons 1.289200e-01   p_joint 5.052000e-02

Joint ci ratio: 7.713586e-02	ci left: 3.967264e-02	ci right 4.287192e-02	k: 2475	n:60000
Cons ci ratio: 4.081219e-02	ci left: 1.305402e-01	ci right 1.359953e-01	k: 7995	n:60000
KS ci ratio: 1.693577e-01	ci left: 8.100132e-03	ci right 9.614615e-03	k: 530	n:60000
TBC1D4   60000 perm   16 sec   (3870 perm/sec)   p_kst 8.833333e-03   p_cons 1.332500e-01   p_joint 4.125000e-02

Joint ci ratio: 7.160382e-02	ci left: 3.958510e-02	ci right 4.253881e-02	k: 2873	n:70000
Cons ci ratio: 3.794607e-02	ci left: 1.297699e-01	ci right 1.348035e-01	k: 9259	n:70000
KS ci ratio: 1.546067e-01	ci left: 8.396074e-03	ci right 9.816494e-03	k: 636	n:70000
TBC1D4   70000 perm   18 sec   (3797 perm/sec)   p_kst 9.085714e-03   p_cons 1.322714e-01   p_joint 4.104286e-02

Joint ci ratio: 6.802898e-02	ci left: 3.849270e-02	ci right 4.121580e-02	k: 3187	n:80000
Cons ci ratio: 3.559395e-02	ci left: 1.293018e-01	ci right 1.340000e-01	k: 10531	n:80000
KS ci ratio: 1.433354e-01	ci left: 8.598224e-03	ci right 9.937727e-03	k: 740	n:80000
TBC1D4   80000 perm   21 sec   (3731 perm/sec)   p_kst 9.250000e-03   p_cons 1.316375e-01   p_joint 3.983750e-02

Joint ci ratio: 6.392058e-02	ci left: 3.882751e-02	ci right 4.140224e-02	k: 3609	n:90000
Cons ci ratio: 3.350866e-02	ci left: 1.297728e-01	ci right 1.342065e-01	k: 11878	n:90000
KS ci ratio: 1.357662e-01	ci left: 8.554337e-03	ci right 9.810937e-03	k: 825	n:90000
TBC1D4   90000 perm   25 sec   (3664 perm/sec)   p_kst 9.166667e-03   p_cons 1.319778e-01   p_joint 4.010000e-02

Joint ci ratio: 6.072810e-02	ci left: 3.878396e-02	ci right 4.122281e-02	k: 3999	n:100000
Cons ci ratio: 3.177787e-02	ci left: 1.299673e-01	ci right 1.341740e-01	k: 13206	n:100000
KS ci ratio: 1.285012e-01	ci left: 8.627205e-03	ci right 9.821521e-03	k: 921	n:100000
TBC1D4   100000 perm   28 sec   (3598 perm/sec)   p_kst 9.210000e-03   p_cons 1.320600e-01   p_joint 3.999000e-02

Joint ci ratio: 5.800506e-02	ci left: 3.870614e-02	ci right 4.102729e-02	k: 4384	n:110000
Cons ci ratio: 3.037096e-02	ci left: 1.295262e-01	ci right 1.335297e-01	k: 14467	n:110000
KS ci ratio: 1.235832e-01	ci left: 8.503203e-03	ci right 9.632000e-03	k: 996	n:110000
TBC1D4   110000 perm   31 sec   (3539 perm/sec)   p_kst 9.054545e-03   p_cons 1.315182e-01   p_joint 3.985455e-02

Joint ci ratio: 5.551532e-02	ci left: 3.878313e-02	ci right 4.100585e-02	k: 4786	n:120000
Cons ci ratio: 2.908889e-02	ci left: 1.295264e-01	ci right 1.333581e-01	k: 15772	n:120000
KS ci ratio: 1.190776e-01	ci left: 8.416775e-03	ci right 9.490491e-03	k: 1073	n:120000
TBC1D4   120000 perm   34 sec   (3482 perm/sec)   p_kst 8.941667e-03   p_cons 1.314333e-01   p_joint 3.988333e-02

Joint ci ratio: 5.352536e-02	ci left: 3.856151e-02	ci right 4.068985e-02	k: 5150	n:130000
Cons ci ratio: 2.795846e-02	ci left: 1.295144e-01	ci right 1.331944e-01	k: 17075	n:130000
KS ci ratio: 1.146799e-01	ci left: 8.396591e-03	ci right 9.425494e-03	k: 1157	n:130000
TBC1D4   130000 perm   38 sec   (3431 perm/sec)   p_kst 8.900000e-03   p_cons 1.313462e-01   p_joint 3.961538e-02

Joint ci ratio: 5.159883e-02	ci left: 3.857032e-02	ci right 4.062023e-02	k: 5542	n:140000
Cons ci ratio: 2.695710e-02	ci left: 1.294498e-01	ci right 1.329941e-01	k: 18370	n:140000
KS ci ratio: 1.098910e-01	ci left: 8.511918e-03	ci right 9.508577e-03	k: 1260	n:140000
TBC1D4   140000 perm   41 sec   (3375 perm/sec)   p_kst 9.000000e-03   p_cons 1.312143e-01   p_joint 3.958571e-02

Joint ci ratio: 4.764067e-02	ci left: 4.215688e-02	ci right 4.422083e-02	k: 6477	n:150000
Cons ci ratio: 2.599306e-02	ci left: 1.299461e-01	ci right 1.333748e-01	k: 19748	n:150000
KS ci ratio: 1.062471e-01	ci left: 8.515268e-03	ci right 9.477189e-03	k: 1348	n:150000
TBC1D4   150000 perm   45 sec   (3326 perm/sec)   p_kst 8.986667e-03   p_cons 1.316533e-01   p_joint 4.318000e-02

Joint ci ratio: 4.846925e-02	ci left: 3.832225e-02	ci right 4.023199e-02	k: 6283	n:160000
Cons ci ratio: 2.515640e-02	ci left: 1.301025e-01	ci right 1.334233e-01	k: 21081	n:160000
KS ci ratio: 1.029070e-01	ci left: 8.524767e-03	ci right 9.455656e-03	k: 1437	n:160000
TBC1D4   160000 perm   49 sec   (3278 perm/sec)   p_kst 8.981250e-03   p_cons 1.317562e-01   p_joint 3.926875e-02

Joint ci ratio: 4.704317e-02	ci left: 3.831728e-02	ci right 4.016906e-02	k: 6670	n:170000
Cons ci ratio: 2.437562e-02	ci left: 1.304294e-01	ci right 1.336537e-01	k: 22446	n:170000
KS ci ratio: 1.001616e-01	ci left: 8.481939e-03	ci right 9.381986e-03	k: 1517	n:170000
TBC1D4   170000 perm   53 sec   (3231 perm/sec)   p_kst 8.923529e-03   p_cons 1.320353e-01   p_joint 3.923529e-02

Joint ci ratio: 4.566869e-02	ci left: 3.842349e-02	ci right 4.022472e-02	k: 7077	n:180000
Cons ci ratio: 2.369138e-02	ci left: 1.304505e-01	ci right 1.335836e-01	k: 23762	n:180000
KS ci ratio: 9.683310e-02	ci left: 8.585126e-03	ci right 9.464130e-03	k: 1623	n:180000
TBC1D4   180000 perm   56 sec   (3188 perm/sec)   p_kst 9.016667e-03   p_cons 1.320111e-01   p_joint 3.931667e-02

Outputting figure to mutsig2_images.part000000000172/TBC1D4.2_3981_180000_0.0090167_0.13201_0.039317.png
                gene_name: TBC1D4
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 81 percent done.
TBCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
Cons ci ratio: 7.584626e-02	ci left: 2.027423e-01	ci right 2.188265e-01	k: 2107	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
TBCC   10000 perm   1 sec   (6813 perm/sec)   p_kst 3.390000e-01   p_cons 2.107000e-01   p_joint 4.184000e-01

Outputting figure to mutsig2_images.part000000000172/TBCC.2_1045_10000_0.339_0.2107_0.4184.png
                gene_name: TBCC
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
TBCCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
Cons ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
KS ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
TBCCD1   10000 perm   2 sec   (6042 perm/sec)   p_kst 9.621000e-01   p_cons 1.613000e-01   p_joint 8.437000e-01

Outputting figure to mutsig2_images.part000000000172/TBCCD1.2_1698_10000_0.9621_0.1613_0.8437.png
                gene_name: TBCCD1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 84 percent done.
TBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
KS ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
TBK1   10000 perm   2 sec   (6010 perm/sec)   p_kst 1.897000e-01   p_cons 8.473000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBK1.2_2270_10000_0.1897_0.8473_1.png
                gene_name: TBK1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TCEAL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
Cons ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
KS ci ratio: 7.904075e-02	ci left: 1.895391e-01	ci right 2.052376e-01	k: 1973	n:10000
TCEAL6   10000 perm   1 sec   (7048 perm/sec)   p_kst 1.973000e-01   p_cons 3.270000e-02   p_joint 5.780000e-02

Joint ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
Cons ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
KS ci ratio: 5.670648e-02	ci left: 1.873526e-01	ci right 1.983368e-01	k: 3856	n:20000
TCEAL6   20000 perm   3 sec   (6097 perm/sec)   p_kst 1.928000e-01   p_cons 3.200000e-02   p_joint 1.241500e-01

Joint ci ratio: 7.761271e-02	ci left: 7.531708e-02	ci right 8.143153e-02	k: 2350	n:30000
Cons ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
KS ci ratio: 4.666341e-02	ci left: 1.859707e-01	ci right 1.948894e-01	k: 5712	n:30000
TCEAL6   30000 perm   5 sec   (5726 perm/sec)   p_kst 1.904000e-01   p_cons 3.140000e-02   p_joint 7.833333e-02

Joint ci ratio: 6.742117e-02	ci left: 7.529172e-02	ci right 8.056975e-02	k: 3116	n:40000
Cons ci ratio: 1.087235e-01	ci left: 2.976121e-02	ci right 3.320724e-02	k: 1258	n:40000
KS ci ratio: 4.034746e-02	ci left: 1.870586e-01	ci right 1.947863e-01	k: 7636	n:40000
TCEAL6   40000 perm   7 sec   (5485 perm/sec)   p_kst 1.909000e-01   p_cons 3.145000e-02   p_joint 7.790000e-02

Joint ci ratio: 6.172583e-02	ci left: 7.233144e-02	ci right 7.695809e-02	k: 3731	n:50000
Cons ci ratio: 9.676250e-02	ci left: 3.024016e-02	ci right 3.333452e-02	k: 1588	n:50000
KS ci ratio: 3.596747e-02	ci left: 1.884960e-01	ci right 1.954198e-01	k: 9597	n:50000
TCEAL6   50000 perm   9 sec   (5305 perm/sec)   p_kst 1.919400e-01   p_cons 3.176000e-02   p_joint 7.462000e-02

Outputting figure to mutsig2_images.part000000000172/TCEAL6.2_556_50000_0.19194_0.03176_0.07462.png
                gene_name: TCEAL6
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 88 percent done.
TCERG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
Cons ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
KS ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
TCERG1   10000 perm   2 sec   (5197 perm/sec)   p_kst 3.069000e-01   p_cons 8.484000e-01   p_joint 8.536000e-01

Outputting figure to mutsig2_images.part000000000172/TCERG1.2_3385_10000_0.3069_0.8484_0.8536.png
                gene_name: TCERG1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 89 percent done.
TCF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
TCF25   10000 perm   2 sec   (5821 perm/sec)   p_kst 5.167000e-01   p_cons 3.932000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCF25.2_2103_10000_0.5167_0.3932_1.png
                gene_name: TCF25
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TCF7L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
Cons ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
KS ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
TCF7L1   10000 perm   2 sec   (6095 perm/sec)   p_kst 9.180000e-02   p_cons 3.974000e-01   p_joint 9.070000e-02

Joint ci ratio: 3.694620e-02	ci left: 3.534430e-01	ci right 3.667977e-01	k: 7202	n:20000
Cons ci ratio: 3.414375e-02	ci left: 3.904089e-01	ci right 4.040210e-01	k: 7944	n:20000
KS ci ratio: 8.773658e-02	ci left: 8.675464e-02	ci right 9.476480e-02	k: 1814	n:20000
TCF7L1   20000 perm   4 sec   (5390 perm/sec)   p_kst 9.070000e-02   p_cons 3.972000e-01   p_joint 3.601000e-01

Outputting figure to mutsig2_images.part000000000172/TCF7L1.2_1815_20000_0.0907_0.3972_0.3601.png
                gene_name: TCF7L1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 93 percent done.
TCL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474760e-03	ci left: 9.903856e-01	ci right 9.939186e-01	k: 9923	n:10000
Cons ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
KS ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
TCL1A   10000 perm   1 sec   (7085 perm/sec)   p_kst 4.417000e-01   p_cons 5.347000e-01   p_joint 9.923000e-01

Outputting figure to mutsig2_images.part000000000172/TCL1A.2_357_10000_0.4417_0.5347_0.9923.png
                gene_name: TCL1A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
TCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
Cons ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
TCN1   10000 perm   2 sec   (6653 perm/sec)   p_kst 1.351000e-01   p_cons 7.389000e-01   p_joint 3.957000e-01

Outputting figure to mutsig2_images.part000000000172/TCN1.2_1338_10000_0.1351_0.7389_0.3957.png
                gene_name: TCN1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 96 percent done.
TCP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
Cons ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
KS ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
TCP10   10000 perm   1 sec   (6866 perm/sec)   p_kst 2.298000e-01   p_cons 5.714000e-01   p_joint 2.987000e-01

Outputting figure to mutsig2_images.part000000000172/TCP10.2_1009_10000_0.2298_0.5714_0.2987.png
                gene_name: TCP10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 98 percent done.
TCP10L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
KS ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
TCP10L2   10000 perm   2 sec   (6553 perm/sec)   p_kst 4.560000e-01   p_cons 2.486000e-01   p_joint 3.915000e-01

Outputting figure to mutsig2_images.part000000000172/TCP10L2.2_1090_10000_0.456_0.2486_0.3915.png
                gene_name: TCP10L2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000172
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 172 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4422609: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000173> was used as the working directory.
Started at Wed Oct 24 18:09:14 2012
Results reported at Wed Oct 24 20:10:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000173.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000173.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 173  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000173.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7435.84 sec.
    Max Memory :      5258 MB
    Max Swap   :      7746 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
173
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 173
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 173: processing genes 15562 - 15651
Calculating significance of each gene.
Using projection method.
15562	TCP11L1	8.397893e-01
15563	TCP11L2	9.212599e-01
15564	TCTA	1
15565	TCTE1	3.092366e-01
15566	TCTE3	1
15567	TCTEX1D1	6.144390e-04
15568	TCTEX1D2	1
15569	TCTEX1D4	1
15570	TCTN1	7.281982e-01
15571	TCTN2	8.642781e-01
15572	TCTN3	1
15573	TDG	8.995143e-01
15574	TDGF1	1.728749e-01
15575	TDO2	1.442170e-02
15576	TDP1	9.151895e-01
15577	TDP2	2.133826e-01
15578	TDRD1	4.286355e-01
15579	TDRD10	2.976637e-01
15580	TDRD3	1.935200e-01
15581	TDRD5	9.470823e-01
15582	TDRD6	9.998965e-01
15583	TDRD7	9.230107e-01
15584	TDRD9	9.687506e-01
15585	TDRKH	8.621380e-01
15586	TEAD1	2.926609e-01
15587	TEAD2	8.782230e-01
15588	TEAD3	7.901181e-01
15589	TEAD4	4.590611e-01
15590	TEC	8.757810e-01
15591	TECPR1	9.899705e-01
15592	TECPR2	9.874789e-01
15593	TECR	7.184086e-01
15594	TECRL	1.972826e-01
15595	TECTA	9.999851e-01
15596	TECTB	1
15597	TEDDM1	4.972235e-01
15598	TEF	6.964395e-01
15599	TEK	8.446615e-01
15600	TEKT1	5.931387e-01
15601	TEKT2	1
15602	TEKT3	8.896470e-01
15603	TEKT4	3.779833e-01
15604	TEKT5	1
15605	TELO2	9.748993e-01
15606	TENC1	9.530739e-01
In gene TEP1 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 8063    n = 1	mu =   4.02e-07
15607	TEP1	9.450462e-01
15608	TEPP	1
15609	TERF1	7.579923e-01
15610	TERF2	1
15611	TERF2IP	1
15612	TERT	1
15613	TES	1
15614	TESC	3.329272e-01
15615	TESK1	7.997425e-01
15616	TESK2	7.107354e-01
In gene TET1 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 6455    n = 1	mu =   9.71e-07
15617	TET1	4.105414e-01
15618	TET2	2.920924e-01
15619	TET3	9.878654e-01
15620	TEX10	1.014088e-01
15621	TEX101	1.034460e-01
15622	TEX11	1.012040e-01
15623	TEX12	1
15624	TEX13A	8.367632e-03
15625	TEX13B	2.701401e-01
15626	TEX14	9.944085e-01
15627	TEX15	8.210096e-01
15628	TEX19	1
15629	TEX2	9.487142e-01
15630	TEX261	1
15631	TEX264	1
15632	TEX9	8.242314e-01
15633	TF	6.644457e-01
15634	TFAM	1
15635	TFAP2A	1
15636	TFAP2B	4.472454e-01
15637	TFAP2C	1
15638	TFAP2D	7.659510e-01
15639	TFAP2E	1
15640	TFAP4	8.147158e-01
15641	TFB1M	3.118169e-01
15642	TFB2M	4.912218e-01
15643	TFCP2	1
15644	TFCP2L1	5.981697e-01
15645	TFDP1	3.699858e-01
15646	TFDP2	8.549589e-01
15647	TFDP3	2.306258e-01
15648	TFE3	6.916160e-01
15649	TFEB	8.097725e-01
15650	TFEC	5.489272e-02
15651	TFF1	1
Done

Running MutSig 2:
Scatter job 173: processing genes 15562 - 15651
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TEX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
Cons ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
KS ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
TEX15   10000 perm   3 sec   (2962 perm/sec)   p_kst 3.003000e-01   p_cons 2.551000e-01   p_joint 2.695000e-01

Outputting figure to mutsig2_images.part000000000173/TEX15.37_8386_10000_0.3003_0.2551_0.2695.png
                gene_name: TEX15
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 2 percent done.
TEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
Cons ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
KS ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
TEP1   10000 perm   3 sec   (3159 perm/sec)   p_kst 3.661000e-01   p_cons 3.737000e-01   p_joint 4.481000e-01

Outputting figure to mutsig2_images.part000000000173/TEP1.23_8100_10000_0.3661_0.3737_0.4481.png
                gene_name: TEP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 3 percent done.
TECTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 1.881357e-02	ci left: 8.050140e-01	ci right 8.204033e-01	k: 8128	n:10000
TECTA   10000 perm   3 sec   (3569 perm/sec)   p_kst 8.128000e-01   p_cons 5.940000e-02   p_joint 2.467000e-01

Joint ci ratio: 5.610351e-02	ci left: 1.906663e-01	ci right 2.017222e-01	k: 3923	n:20000
Cons ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
KS ci ratio: 1.345994e-02	ci left: 8.036846e-01	ci right 8.146254e-01	k: 16184	n:20000
TECTA   20000 perm   6 sec   (3379 perm/sec)   p_kst 8.092000e-01   p_cons 6.165000e-02   p_joint 1.961500e-01

Joint ci ratio: 4.217249e-02	ci left: 2.188624e-01	ci right 2.283246e-01	k: 6707	n:30000
Cons ci ratio: 8.795320e-02	ci left: 5.936226e-02	ci right 6.485626e-02	k: 1862	n:30000
KS ci ratio: 1.032506e-02	ci left: 8.234120e-01	ci right 8.319911e-01	k: 24832	n:30000
TECTA   30000 perm   9 sec   (3283 perm/sec)   p_kst 8.277333e-01   p_cons 6.206667e-02   p_joint 2.235667e-01

Outputting figure to mutsig2_images.part000000000173/TECTA.17_6558_30000_0.82773_0.062067_0.22357.png
                gene_name: TECTA
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 5 percent done.
TDRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.592394e-02	ci left: 6.865760e-01	ci right 7.047099e-01	k: 6957	n:10000
Cons ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
KS ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
TDRD5   10000 perm   2 sec   (4266 perm/sec)   p_kst 7.955000e-01   p_cons 2.612000e-01   p_joint 6.957000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD5.16_3010_10000_0.7955_0.2612_0.6957.png
                gene_name: TDRD5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 7 percent done.
TET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
Cons ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
KS ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
TET1   10000 perm   3 sec   (3613 perm/sec)   p_kst 2.086000e-01   p_cons 6.945000e-01   p_joint 3.318000e-01

Outputting figure to mutsig2_images.part000000000173/TET1.16_6455_10000_0.2086_0.6945_0.3318.png
                gene_name: TET1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 8 percent done.
TECRL
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
Cons ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
KS ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
TECRL   10000 perm   2 sec   (5317 perm/sec)   p_kst 3.886000e-01   p_cons 5.539000e-01   p_joint 4.221000e-01

Outputting figure to mutsig2_images.part000000000173/TECRL.11_1140_10000_0.3886_0.5539_0.4221.png
                gene_name: TECRL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 10 percent done.
TEX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TEX14   10000 perm   2 sec   (4024 perm/sec)   p_kst 1   p_cons 9.112000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEX14.11_4604_10000_1_0.9112_1.png
                gene_name: TEX14
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
TEX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
TEX10   10000 perm   2 sec   (4878 perm/sec)   p_kst 2.705000e-01   p_cons 7.550000e-02   p_joint 1.553000e-01

Joint ci ratio: 7.565317e-02	ci left: 1.138548e-01	ci right 1.228565e-01	k: 2366	n:20000
Cons ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
KS ci ratio: 4.596184e-02	ci left: 2.605307e-01	ci right 2.728372e-01	k: 5333	n:20000
TEX10   20000 perm   4 sec   (4448 perm/sec)   p_kst 2.666500e-01   p_cons 7.460000e-02   p_joint 1.183000e-01

Outputting figure to mutsig2_images.part000000000173/TEX10.9_2859_20000_0.26665_0.0746_0.1183.png
                gene_name: TEX10
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
TFAP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.669611e-02	ci left: 4.036251e-01	ci right 4.230255e-01	k: 4133	n:10000
Cons ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
KS ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
TFAP2B   10000 perm   2 sec   (4760 perm/sec)   p_kst 2.056000e-01   p_cons 5.115000e-01   p_joint 4.133000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2B.9_1411_10000_0.2056_0.5115_0.4133.png
                gene_name: TFAP2B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 15 percent done.
TDRD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
Cons ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
KS ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
TDRD6   10000 perm   2 sec   (4037 perm/sec)   p_kst 7.416000e-01   p_cons 3.630000e-01   p_joint 6.766000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD6.8_6307_10000_0.7416_0.363_0.6766.png
                gene_name: TDRD6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 17 percent done.
TEX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
Cons ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
TEX11   10000 perm   2 sec   (4976 perm/sec)   p_kst 4.270000e-02   p_cons 9.199000e-01   p_joint 1.370000e-01

Joint ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
Cons ci ratio: 8.595701e-03	ci left: 9.082947e-01	ci right 9.161850e-01	k: 18246	n:20000
KS ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
TEX11   20000 perm   4 sec   (4483 perm/sec)   p_kst 4.335000e-02   p_cons 9.123000e-01   p_joint 8.295000e-02

Joint ci ratio: 7.279728e-02	ci left: 8.491596e-02	ci right 9.136406e-02	k: 2643	n:30000
Cons ci ratio: 7.023778e-03	ci left: 9.089070e-01	ci right 9.153463e-01	k: 27365	n:30000
KS ci ratio: 1.069412e-01	ci left: 4.056979e-02	ci right 4.518594e-02	k: 1285	n:30000
TEX11   30000 perm   7 sec   (4301 perm/sec)   p_kst 4.283333e-02   p_cons 9.121667e-01   p_joint 8.810000e-02

Joint ci ratio: 6.605196e-02	ci left: 7.824576e-02	ci right 8.361526e-02	k: 3236	n:40000
Cons ci ratio: 6.097437e-03	ci left: 9.089531e-01	ci right 9.145370e-01	k: 36471	n:40000
KS ci ratio: 9.274612e-02	ci left: 4.076388e-02	ci right 4.475285e-02	k: 1709	n:40000
TEX11   40000 perm   10 sec   (4163 perm/sec)   p_kst 4.272500e-02   p_cons 9.117750e-01   p_joint 8.090000e-02

Outputting figure to mutsig2_images.part000000000173/TEX11.8_2980_40000_0.042725_0.91178_0.0809.png
                gene_name: TEX11
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 18 percent done.
TDO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
TDO2   10000 perm   2 sec   (5437 perm/sec)   p_kst 2.498000e-01   p_cons 9.788000e-01   p_joint 3.959000e-01

Outputting figure to mutsig2_images.part000000000173/TDO2.7_1269_10000_0.2498_0.9788_0.3959.png
                gene_name: TDO2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
TDRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.762478e-02	ci left: 2.429207e-01	ci right 2.600243e-01	k: 2514	n:10000
Cons ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
KS ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
TDRD1   10000 perm   2 sec   (4793 perm/sec)   p_kst 9.880000e-02   p_cons 7.319000e-01   p_joint 2.514000e-01

Joint ci ratio: 6.531773e-02	ci left: 1.475927e-01	ci right 1.576085e-01	k: 3051	n:20000
Cons ci ratio: 1.679730e-02	ci left: 7.251989e-01	ci right 7.375338e-01	k: 14628	n:20000
KS ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
TDRD1   20000 perm   5 sec   (4359 perm/sec)   p_kst 9.450000e-02   p_cons 7.314000e-01   p_joint 1.525500e-01

Outputting figure to mutsig2_images.part000000000173/TDRD1.7_3670_20000_0.0945_0.7314_0.15255.png
                gene_name: TDRD1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 22 percent done.
TDRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
Cons ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
KS ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
TDRD3   10000 perm   2 sec   (5479 perm/sec)   p_kst 1.167000e-01   p_cons 2.271000e-01   p_joint 1.534000e-01

Joint ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
Cons ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
KS ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
TDRD3   20000 perm   4 sec   (4898 perm/sec)   p_kst 1.162000e-01   p_cons 2.227500e-01   p_joint 1.548500e-01

Outputting figure to mutsig2_images.part000000000173/TDRD3.7_2287_20000_0.1162_0.22275_0.15485.png
                gene_name: TDRD3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 23 percent done.
TET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
TET2   10000 perm   2 sec   (4198 perm/sec)   p_kst 1.484000e-01   p_cons 5.493000e-01   p_joint 3.667000e-01

Outputting figure to mutsig2_images.part000000000173/TET2.7_6134_10000_0.1484_0.5493_0.3667.png
                gene_name: TET2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 25 percent done.
TEX13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
Cons ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
TEX13A   10000 perm   2 sec   (5881 perm/sec)   p_kst 3.375000e-01   p_cons 1.854000e-01   p_joint 3.233000e-01

Outputting figure to mutsig2_images.part000000000173/TEX13A.7_1240_10000_0.3375_0.1854_0.3233.png
                gene_name: TEX13A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 27 percent done.
TFAP2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
KS ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
TFAP2D   10000 perm   2 sec   (5836 perm/sec)   p_kst 4.495000e-01   p_cons 2.837000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2D.7_1391_10000_0.4495_0.2837_0.4118.png
                gene_name: TFAP2D
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 28 percent done.
TCTEX1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
Cons ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
KS ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
TCTEX1D1   10000 perm   2 sec   (6269 perm/sec)   p_kst 2.638000e-01   p_cons 4.986000e-01   p_joint 4.537000e-01

Outputting figure to mutsig2_images.part000000000173/TCTEX1D1.6_556_10000_0.2638_0.4986_0.4537.png
                gene_name: TCTEX1D1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 30 percent done.
TDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
KS ci ratio: 1.411309e-02	ci left: 8.788919e-01	ci right 8.914828e-01	k: 8853	n:10000
TDP1   10000 perm   2 sec   (5351 perm/sec)   p_kst 8.853000e-01   p_cons 9.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDP1.6_1887_10000_0.8853_0.9884_1.png
                gene_name: TDP1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
TENC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
TENC1   10000 perm   2 sec   (4458 perm/sec)   p_kst 1.674000e-01   p_cons 1.530000e-01   p_joint 1.239000e-01

Joint ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
Cons ci ratio: 6.511643e-02	ci left: 1.483819e-01	ci right 1.584191e-01	k: 3067	n:20000
KS ci ratio: 6.389098e-02	ci left: 1.533154e-01	ci right 1.634841e-01	k: 3167	n:20000
TENC1   20000 perm   5 sec   (4091 perm/sec)   p_kst 1.583500e-01   p_cons 1.533500e-01   p_joint 9.455000e-02

Outputting figure to mutsig2_images.part000000000173/TENC1.6_4455_20000_0.15835_0.15335_0.09455.png
                gene_name: TENC1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 33 percent done.
TDRD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
Cons ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
KS ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
TDRD10   10000 perm   2 sec   (5688 perm/sec)   p_kst 5.356000e-01   p_cons 5.530000e-02   p_joint 1.740000e-01

Joint ci ratio: 4.606193e-02	ci left: 2.596870e-01	ci right 2.719811e-01	k: 5316	n:20000
Cons ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
KS ci ratio: 2.587629e-02	ci left: 5.273572e-01	ci right 5.412328e-01	k: 10686	n:20000
TDRD10   20000 perm   4 sec   (5102 perm/sec)   p_kst 5.343000e-01   p_cons 5.465000e-02   p_joint 2.658000e-01

Joint ci ratio: 3.931510e-02	ci left: 2.439820e-01	ci right 2.538000e-01	k: 7466	n:30000
Cons ci ratio: 9.390133e-02	ci left: 5.231636e-02	ci right 5.750360e-02	k: 1646	n:30000
KS ci ratio: 2.145606e-02	ci left: 5.209644e-01	ci right 5.322971e-01	k: 15799	n:30000
TDRD10   30000 perm   6 sec   (4898 perm/sec)   p_kst 5.266333e-01   p_cons 5.486667e-02   p_joint 2.488667e-01

Outputting figure to mutsig2_images.part000000000173/TDRD10.5_1182_30000_0.52663_0.054867_0.24887.png
                gene_name: TDRD10
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 35 percent done.
TEAD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880420e-02	ci left: 4.951504e-01	ci right 5.148467e-01	k: 5050	n:10000
Cons ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
KS ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
TEAD1   10000 perm   2 sec   (5860 perm/sec)   p_kst 3.691000e-01   p_cons 3.784000e-01   p_joint 5.050000e-01

Outputting figure to mutsig2_images.part000000000173/TEAD1.4_1325_10000_0.3691_0.3784_0.505.png
                gene_name: TEAD1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 37 percent done.
TEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
Cons ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
TEC   10000 perm   2 sec   (5301 perm/sec)   p_kst 1.170000e-02   p_cons 5.824000e-01   p_joint 3.630000e-02

Joint ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
Cons ci ratio: 2.335212e-02	ci left: 5.779841e-01	ci right 5.916913e-01	k: 11697	n:20000
KS ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
TEC   20000 perm   4 sec   (4809 perm/sec)   p_kst 1.160000e-02   p_cons 5.848500e-01   p_joint 2.725000e-02

Joint ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
Cons ci ratio: 1.907187e-02	ci left: 5.791326e-01	ci right 5.903177e-01	k: 17542	n:30000
KS ci ratio: 2.028049e-01	ci left: 1.105183e-02	ci right 1.357727e-02	k: 368	n:30000
TEC   30000 perm   7 sec   (4610 perm/sec)   p_kst 1.226667e-02   p_cons 5.847333e-01   p_joint 3.350000e-02

Joint ci ratio: 1.223378e-01	ci left: 2.349206e-02	ci right 2.657742e-02	k: 1000	n:40000
Cons ci ratio: 1.652737e-02	ci left: 5.795770e-01	ci right 5.892608e-01	k: 23377	n:40000
KS ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
TEC   40000 perm   9 sec   (4480 perm/sec)   p_kst 1.187500e-02   p_cons 5.844250e-01   p_joint 2.500000e-02

Joint ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
Cons ci ratio: 1.473292e-02	ci left: 5.817279e-01	ci right 5.903821e-01	k: 29303	n:50000
KS ci ratio: 1.586677e-01	ci left: 1.110244e-02	ci right 1.303483e-02	k: 602	n:50000
TEC   50000 perm   11 sec   (4374 perm/sec)   p_kst 1.204000e-02   p_cons 5.860600e-01   p_joint 3.206000e-02

Joint ci ratio: 7.993849e-02	ci left: 3.699088e-02	ci right 4.008730e-02	k: 2311	n:60000
Cons ci ratio: 1.342926e-02	ci left: 5.828308e-01	ci right 5.907274e-01	k: 35207	n:60000
KS ci ratio: 1.457224e-01	ci left: 1.104768e-02	ci right 1.280000e-02	k: 714	n:60000
TEC   60000 perm   14 sec   (4287 perm/sec)   p_kst 1.190000e-02   p_cons 5.867833e-01   p_joint 3.851667e-02

Joint ci ratio: 7.616902e-02	ci left: 3.506678e-02	ci right 3.785753e-02	k: 2551	n:70000
Cons ci ratio: 1.247449e-02	ci left: 5.815110e-01	ci right 5.888248e-01	k: 40962	n:70000
KS ci ratio: 1.341956e-01	ci left: 1.123414e-02	ci right 1.286383e-02	k: 842	n:70000
TEC   70000 perm   17 sec   (4203 perm/sec)   p_kst 1.202857e-02   p_cons 5.851714e-01   p_joint 3.644286e-02

Joint ci ratio: 8.480553e-02	ci left: 2.490823e-02	ci right 2.712632e-02	k: 2080	n:80000
Cons ci ratio: 1.165584e-02	ci left: 5.822897e-01	ci right 5.891291e-01	k: 46857	n:80000
KS ci ratio: 1.291330e-01	ci left: 1.065167e-02	ci right 1.213408e-02	k: 910	n:80000
TEC   80000 perm   19 sec   (4131 perm/sec)   p_kst 1.137500e-02   p_cons 5.857125e-01   p_joint 2.600000e-02

Joint ci ratio: 7.081882e-02	ci left: 3.175508e-02	ci right 3.409738e-02	k: 2962	n:90000
Cons ci ratio: 1.098727e-02	ci left: 5.825736e-01	ci right 5.890209e-01	k: 52722	n:90000
KS ci ratio: 1.224675e-01	ci left: 1.056580e-02	ci right 1.195486e-02	k: 1012	n:90000
TEC   90000 perm   22 sec   (4061 perm/sec)   p_kst 1.124444e-02   p_cons 5.858000e-01   p_joint 3.291111e-02

Joint ci ratio: 7.093930e-02	ci left: 2.857788e-02	ci right 3.068952e-02	k: 2962	n:100000
Cons ci ratio: 1.040713e-02	ci left: 5.835003e-01	ci right 5.896146e-01	k: 58656	n:100000
KS ci ratio: 1.162120e-01	ci left: 1.059581e-02	ci right 1.191277e-02	k: 1124	n:100000
TEC   100000 perm   25 sec   (3994 perm/sec)   p_kst 1.124000e-02   p_cons 5.865600e-01   p_joint 2.962000e-02

Joint ci ratio: 7.647692e-02	ci left: 2.243440e-02	ci right 2.422721e-02	k: 2565	n:110000
Cons ci ratio: 9.933725e-03	ci left: 5.831098e-01	ci right 5.889402e-01	k: 64463	n:110000
KS ci ratio: 1.117901e-01	ci left: 1.043619e-02	ci right 1.168070e-02	k: 1215	n:110000
TEC   110000 perm   28 sec   (3928 perm/sec)   p_kst 1.104545e-02   p_cons 5.860273e-01   p_joint 2.331818e-02

Joint ci ratio: 7.360257e-02	ci left: 2.224107e-02	ci right 2.394876e-02	k: 2770	n:120000
Cons ci ratio: 9.522310e-03	ci left: 5.826481e-01	ci right 5.882311e-01	k: 70253	n:120000
KS ci ratio: 1.079625e-01	ci left: 1.027965e-02	ci right 1.146084e-02	k: 1303	n:120000
TEC   120000 perm   31 sec   (3868 perm/sec)   p_kst 1.085833e-02   p_cons 5.854417e-01   p_joint 2.308333e-02

Joint ci ratio: 7.061782e-02	ci left: 2.233556e-02	ci right 2.397811e-02	k: 3009	n:130000
Cons ci ratio: 9.148661e-03	ci left: 5.827624e-01	ci right 5.881261e-01	k: 76108	n:130000
KS ci ratio: 1.041628e-01	ci left: 1.021525e-02	ci right 1.134520e-02	k: 1400	n:130000
TEC   130000 perm   34 sec   (3815 perm/sec)   p_kst 1.076923e-02   p_cons 5.854462e-01   p_joint 2.314615e-02

Joint ci ratio: 5.920295e-02	ci left: 2.946460e-02	ci right 3.126921e-02	k: 4250	n:140000
Cons ci ratio: 8.811267e-03	ci left: 5.831143e-01	ci right 5.882821e-01	k: 81998	n:140000
KS ci ratio: 1.001983e-01	ci left: 1.027212e-02	ci right 1.136257e-02	k: 1513	n:140000
TEC   140000 perm   37 sec   (3764 perm/sec)   p_kst 1.080714e-02   p_cons 5.857000e-01   p_joint 3.035714e-02

Joint ci ratio: 5.972906e-02	ci left: 2.707896e-02	ci right 2.875269e-02	k: 4186	n:150000
Cons ci ratio: 8.522440e-03	ci left: 5.826350e-01	ci right 5.876284e-01	k: 87770	n:150000
KS ci ratio: 9.713866e-02	ci left: 1.021801e-02	ci right 1.126770e-02	k: 1610	n:150000
TEC   150000 perm   40 sec   (3717 perm/sec)   p_kst 1.073333e-02   p_cons 5.851333e-01   p_joint 2.790667e-02

Outputting figure to mutsig2_images.part000000000173/TEC.5_1964_150000_0.010733_0.58513_0.027907.png
                gene_name: TEC
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 38 percent done.
TEX13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
TEX13B   10000 perm   2 sec   (6179 perm/sec)   p_kst 1.088000e-01   p_cons 4.670000e-02   p_joint 3.360000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
KS ci ratio: 7.777433e-02	ci left: 1.082998e-01	ci right 1.171132e-01	k: 2253	n:20000
TEX13B   20000 perm   4 sec   (5512 perm/sec)   p_kst 1.126500e-01   p_cons 4.830000e-02   p_joint 5.720000e-02

Joint ci ratio: 1.173954e-01	ci left: 3.372600e-02	ci right 3.796450e-02	k: 1074	n:30000
Cons ci ratio: 9.945493e-02	ci left: 4.677963e-02	ci right 5.170813e-02	k: 1476	n:30000
KS ci ratio: 6.311431e-02	ci left: 1.103259e-01	ci right 1.175490e-01	k: 3417	n:30000
TEX13B   30000 perm   6 sec   (5258 perm/sec)   p_kst 1.139000e-01   p_cons 4.920000e-02   p_joint 3.580000e-02

Joint ci ratio: 1.111153e-01	ci left: 2.849591e-02	ci right 3.187275e-02	k: 1206	n:40000
Cons ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
KS ci ratio: 5.479682e-02	ci left: 1.103083e-01	ci right 1.165479e-01	k: 4536	n:40000
TEX13B   40000 perm   8 sec   (5092 perm/sec)   p_kst 1.134000e-01   p_cons 4.110000e-02   p_joint 3.015000e-02

Joint ci ratio: 9.961482e-02	ci left: 2.854162e-02	ci right 3.155327e-02	k: 1501	n:50000
Cons ci ratio: 8.433469e-02	ci left: 3.967052e-02	ci right 4.318298e-02	k: 2070	n:50000
KS ci ratio: 4.913532e-02	ci left: 1.101386e-01	ci right 1.157064e-01	k: 5645	n:50000
TEX13B   50000 perm   10 sec   (4955 perm/sec)   p_kst 1.129000e-01   p_cons 4.140000e-02   p_joint 3.002000e-02

Outputting figure to mutsig2_images.part000000000173/TEX13B.5_947_50000_0.1129_0.0414_0.03002.png
                gene_name: TEX13B
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 40 percent done.
TEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
Cons ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
KS ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
TEX2   10000 perm   2 sec   (4759 perm/sec)   p_kst 6.033000e-01   p_cons 8.330000e-02   p_joint 3.397000e-01

Joint ci ratio: 4.245690e-02	ci left: 2.924609e-01	ci right 3.051976e-01	k: 5976	n:20000
Cons ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
KS ci ratio: 2.184690e-02	ci left: 6.100206e-01	ci right 6.235454e-01	k: 12336	n:20000
TEX2   20000 perm   5 sec   (4438 perm/sec)   p_kst 6.168000e-01   p_cons 8.140000e-02   p_joint 2.988000e-01

Outputting figure to mutsig2_images.part000000000173/TEX2.5_3449_20000_0.6168_0.0814_0.2988.png
                gene_name: TEX2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 42 percent done.
TFDP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.854166e-02	ci left: 6.440798e-01	ci right 6.628308e-01	k: 6535	n:10000
KS ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
TFDP3   10000 perm   2 sec   (5486 perm/sec)   p_kst 9.422000e-01   p_cons 6.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TFDP3.5_1222_10000_0.9422_0.6535_1.png
                gene_name: TFDP3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
TFEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
Cons ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
KS ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
TFEC   10000 perm   2 sec   (6005 perm/sec)   p_kst 6.653000e-01   p_cons 6.026000e-01   p_joint 7.597000e-01

Outputting figure to mutsig2_images.part000000000173/TFEC.5_1072_10000_0.6653_0.6026_0.7597.png
                gene_name: TFEC
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 45 percent done.
TCTE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
Cons ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
KS ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
TCTE1   10000 perm   2 sec   (5759 perm/sec)   p_kst 4.134000e-01   p_cons 5.101000e-01   p_joint 5.518000e-01

Outputting figure to mutsig2_images.part000000000173/TCTE1.4_1522_10000_0.4134_0.5101_0.5518.png
                gene_name: TCTE1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 47 percent done.
TCTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
TCTN1   10000 perm   2 sec   (5653 perm/sec)   p_kst 4.740000e-02   p_cons 5.716000e-01   p_joint 1.171000e-01

Joint ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
Cons ci ratio: 2.454842e-02	ci left: 5.534879e-01	ci right 5.672946e-01	k: 11208	n:20000
KS ci ratio: 1.219798e-01	ci left: 4.609757e-02	ci right 5.213438e-02	k: 981	n:20000
TCTN1   20000 perm   4 sec   (5101 perm/sec)   p_kst 4.905000e-02   p_cons 5.604000e-01   p_joint 1.072500e-01

Joint ci ratio: 6.388682e-02	ci left: 1.079265e-01	ci right 1.150822e-01	k: 3344	n:30000
Cons ci ratio: 2.007940e-02	ci left: 5.538934e-01	ci right 5.651617e-01	k: 16786	n:30000
KS ci ratio: 9.702640e-02	ci left: 4.909101e-02	ci right 5.412960e-02	k: 1547	n:30000
TCTN1   30000 perm   6 sec   (4895 perm/sec)   p_kst 5.156667e-02   p_cons 5.595333e-01   p_joint 1.114667e-01

Outputting figure to mutsig2_images.part000000000173/TCTN1.4_2007_30000_0.051567_0.55953_0.11147.png
                gene_name: TCTN1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
TDRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
KS ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
TDRD9   10000 perm   2 sec   (5138 perm/sec)   p_kst 7.912000e-01   p_cons 5.023000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDRD9.4_4293_10000_0.7912_0.5023_1.png
                gene_name: TDRD9
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
TEAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
TEAD4   10000 perm   2 sec   (6320 perm/sec)   p_kst 2.817000e-01   p_cons 8.310000e-02   p_joint 9.970000e-02

Joint ci ratio: 5.766221e-02	ci left: 1.822597e-01	ci right 1.931313e-01	k: 3753	n:20000
Cons ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
KS ci ratio: 4.342898e-02	ci left: 2.831211e-01	ci right 2.957401e-01	k: 5788	n:20000
TEAD4   20000 perm   4 sec   (5632 perm/sec)   p_kst 2.894000e-01   p_cons 8.515000e-02   p_joint 1.876500e-01

Outputting figure to mutsig2_images.part000000000173/TEAD4.4_1349_20000_0.2894_0.08515_0.18765.png
                gene_name: TEAD4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 52 percent done.
TEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
Cons ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
KS ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
TEK   10000 perm   2 sec   (5168 perm/sec)   p_kst 9.650000e-02   p_cons 7.878000e-01   p_joint 2.018000e-01

Joint ci ratio: 5.128126e-02	ci left: 2.202683e-01	ci right 2.319114e-01	k: 4521	n:20000
Cons ci ratio: 1.471244e-02	ci left: 7.743953e-01	ci right 7.859231e-01	k: 15604	n:20000
KS ci ratio: 8.290107e-02	ci left: 9.636635e-02	ci right 1.047502e-01	k: 2010	n:20000
TEK   20000 perm   4 sec   (4690 perm/sec)   p_kst 1.005000e-01   p_cons 7.802000e-01   p_joint 2.260500e-01

Outputting figure to mutsig2_images.part000000000173/TEK.4_3467_20000_0.1005_0.7802_0.22605.png
                gene_name: TEK
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 53 percent done.
TERT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
Cons ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
TERT   10000 perm   2 sec   (5738 perm/sec)   p_kst 1.394000e-01   p_cons 9.413000e-01   p_joint 3.836000e-01

Outputting figure to mutsig2_images.part000000000173/TERT.4_3463_10000_0.1394_0.9413_0.3836.png
                gene_name: TERT
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 55 percent done.
TF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
Cons ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
KS ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
TF   10000 perm   2 sec   (5646 perm/sec)   p_kst 1.018000e-01   p_cons 1.880000e-02   p_joint 4.410000e-02

Joint ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
Cons ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
KS ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
TF   20000 perm   4 sec   (5086 perm/sec)   p_kst 1.107500e-01   p_cons 2.015000e-02   p_joint 3.645000e-02

Joint ci ratio: 1.221922e-01	ci left: 3.113662e-02	ci right 3.522111e-02	k: 994	n:30000
Cons ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
KS ci ratio: 6.497407e-02	ci left: 1.046735e-01	ci right 1.117360e-01	k: 3245	n:30000
TF   30000 perm   6 sec   (4862 perm/sec)   p_kst 1.081667e-01   p_cons 2.560000e-02   p_joint 3.313333e-02

Joint ci ratio: 1.167731e-01	ci left: 2.579781e-02	ci right 2.902129e-02	k: 1095	n:40000
Cons ci ratio: 1.257964e-01	ci left: 2.220724e-02	ci right 2.521245e-02	k: 947	n:40000
KS ci ratio: 5.634239e-02	ci left: 1.049003e-01	ci right 1.110068e-01	k: 4317	n:40000
TF   40000 perm   8 sec   (4713 perm/sec)   p_kst 1.079250e-01   p_cons 2.367500e-02   p_joint 2.737500e-02

Joint ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
Cons ci ratio: 1.117457e-01	ci left: 2.267618e-02	ci right 2.537947e-02	k: 1200	n:50000
KS ci ratio: 5.034983e-02	ci left: 1.053911e-01	ci right 1.108544e-01	k: 5405	n:50000
TF   50000 perm   11 sec   (4596 perm/sec)   p_kst 1.081000e-01   p_cons 2.400000e-02   p_joint 3.596000e-02

Joint ci ratio: 7.860432e-02	ci left: 3.823340e-02	ci right 4.137798e-02	k: 2387	n:60000
Cons ci ratio: 1.017279e-01	ci left: 2.292012e-02	ci right 2.539287e-02	k: 1448	n:60000
KS ci ratio: 4.586076e-02	ci left: 1.060551e-01	ci right 1.110495e-01	k: 6512	n:60000
TF   60000 perm   13 sec   (4499 perm/sec)   p_kst 1.085333e-01   p_cons 2.413333e-02   p_joint 3.978333e-02

Joint ci ratio: 8.049169e-02	ci left: 3.145078e-02	ci right 3.410242e-02	k: 2293	n:70000
Cons ci ratio: 9.408206e-02	ci left: 2.306027e-02	ci right 2.535083e-02	k: 1693	n:70000
KS ci ratio: 4.252952e-02	ci left: 1.059221e-01	ci right 1.105390e-01	k: 7575	n:70000
TF   70000 perm   16 sec   (4411 perm/sec)   p_kst 1.082143e-01   p_cons 2.418571e-02   p_joint 3.275714e-02

Outputting figure to mutsig2_images.part000000000173/TF.4_2165_70000_0.10821_0.024186_0.032757.png
                gene_name: TF
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 57 percent done.
TFCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
Cons ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
KS ci ratio: 7.525856e-02	ci left: 2.053056e-01	ci right 2.214617e-01	k: 2133	n:10000
TFCP2   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.133000e-01   p_cons 1.327000e-01   p_joint 1.703000e-01

Joint ci ratio: 5.710114e-02	ci left: 1.852262e-01	ci right 1.961638e-01	k: 3813	n:20000
Cons ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KS ci ratio: 5.361592e-02	ci left: 2.052141e-01	ci right 2.165701e-01	k: 4217	n:20000
TFCP2   20000 perm   4 sec   (5263 perm/sec)   p_kst 2.108500e-01   p_cons 1.300000e-01   p_joint 1.906500e-01

Outputting figure to mutsig2_images.part000000000173/TFCP2.4_1569_20000_0.21085_0.13_0.19065.png
                gene_name: TFCP2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
TDGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
Cons ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
TDGF1   10000 perm   2 sec   (6611 perm/sec)   p_kst 3.932000e-01   p_cons 2.213000e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000173/TDGF1.3_591_10000_0.3932_0.2213_0.4622.png
                gene_name: TDGF1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 60 percent done.
TDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
Cons ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
TDP2   10000 perm   2 sec   (6334 perm/sec)   p_kst 8.631000e-01   p_cons 1.070000e-01   p_joint 4.544000e-01

Joint ci ratio: 3.091838e-02	ci left: 4.386450e-01	ci right 4.524708e-01	k: 8911	n:20000
Cons ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
KS ci ratio: 1.094660e-02	ci left: 8.602874e-01	ci right 8.698062e-01	k: 17302	n:20000
TDP2   20000 perm   4 sec   (5634 perm/sec)   p_kst 8.651000e-01   p_cons 1.095000e-01   p_joint 4.455500e-01

Outputting figure to mutsig2_images.part000000000173/TDP2.3_1117_20000_0.8651_0.1095_0.44555.png
                gene_name: TDP2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
TDRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
KS ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
TDRD7   10000 perm   2 sec   (5376 perm/sec)   p_kst 7.957000e-01   p_cons 9.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDRD7.3_3361_10000_0.7957_0.9211_1.png
                gene_name: TDRD7
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
TEAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
TEAD3   10000 perm   2 sec   (6398 perm/sec)   p_kst 2.396000e-01   p_cons 5.981000e-01   p_joint 4.053000e-01

Outputting figure to mutsig2_images.part000000000173/TEAD3.3_1356_10000_0.2396_0.5981_0.4053.png
                gene_name: TEAD3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 65 percent done.
TECPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
Cons ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
TECPR2   10000 perm   2 sec   (5192 perm/sec)   p_kst 7.197000e-01   p_cons 2.891000e-01   p_joint 7.524000e-01

Outputting figure to mutsig2_images.part000000000173/TECPR2.3_4327_10000_0.7197_0.2891_0.7524.png
                gene_name: TECPR2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 67 percent done.
TEKT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 1.345887e-02	ci left: 8.884162e-01	ci right 9.005529e-01	k: 8946	n:10000
TEKT4   10000 perm   1 sec   (6673 perm/sec)   p_kst 8.946000e-01   p_cons 7.850000e-02   p_joint 3.259000e-01

Joint ci ratio: 2.922054e-02	ci left: 4.666594e-01	ci right 4.805483e-01	k: 9472	n:20000
Cons ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
KS ci ratio: 9.755946e-03	ci left: 8.853784e-01	ci right 8.941079e-01	k: 17796	n:20000
TEKT4   20000 perm   3 sec   (5896 perm/sec)   p_kst 8.898000e-01   p_cons 8.935000e-02   p_joint 4.736000e-01

Outputting figure to mutsig2_images.part000000000173/TEKT4.3_1332_20000_0.8898_0.08935_0.4736.png
                gene_name: TEKT4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 68 percent done.
TESK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
Cons ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
KS ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
TESK1   10000 perm   2 sec   (6050 perm/sec)   p_kst 1.183000e-01   p_cons 9.471000e-01   p_joint 2.204000e-01

Joint ci ratio: 5.430182e-02	ci left: 2.010564e-01	ci right 2.123290e-01	k: 4133	n:20000
Cons ci ratio: 6.441495e-03	ci left: 9.456545e-01	ci right 9.518142e-01	k: 18976	n:20000
KS ci ratio: 7.706328e-02	ci left: 1.101183e-01	ci right 1.189941e-01	k: 2290	n:20000
TESK1   20000 perm   4 sec   (5384 perm/sec)   p_kst 1.145000e-01   p_cons 9.488000e-01   p_joint 2.066500e-01

Outputting figure to mutsig2_images.part000000000173/TESK1.3_1921_20000_0.1145_0.9488_0.20665.png
                gene_name: TESK1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
TESK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
KS ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
TESK2   10000 perm   2 sec   (6104 perm/sec)   p_kst 7.662000e-01   p_cons 7.782000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TESK2.3_1756_10000_0.7662_0.7782_1.png
                gene_name: TESK2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TET3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
Cons ci ratio: 1.774850e-02	ci left: 8.223902e-01	ci right 8.372171e-01	k: 8299	n:10000
KS ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
TET3   10000 perm   2 sec   (4921 perm/sec)   p_kst 2.885000e-01   p_cons 8.299000e-01   p_joint 3.969000e-01

Outputting figure to mutsig2_images.part000000000173/TET3.3_5019_10000_0.2885_0.8299_0.3969.png
                gene_name: TET3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 73 percent done.
TEX101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
Cons ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
KS ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
TEX101   10000 perm   2 sec   (6555 perm/sec)   p_kst 3.086000e-01   p_cons 2.523000e-01   p_joint 3.035000e-01

Outputting figure to mutsig2_images.part000000000173/TEX101.3_828_10000_0.3086_0.2523_0.3035.png
                gene_name: TEX101
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
TFAP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
TFAP2A   10000 perm   2 sec   (6158 perm/sec)   p_kst 9.113000e-01   p_cons 9.110000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
KS ci ratio: 8.694659e-03	ci left: 9.064078e-01	ci right 9.143724e-01	k: 18209	n:20000
TFAP2A   20000 perm   4 sec   (5438 perm/sec)   p_kst 9.104500e-01   p_cons 8.985000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TFAP2A.3_1410_20000_0.91045_0.08985_1.png
                gene_name: TFAP2A
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TFB1M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
Cons ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
KS ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
TFB1M   10000 perm   2 sec   (6287 perm/sec)   p_kst 7.941000e-01   p_cons 3.401000e-01   p_joint 8.390000e-01

Outputting figure to mutsig2_images.part000000000173/TFB1M.3_1069_10000_0.7941_0.3401_0.839.png
                gene_name: TFB1M
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
TFB2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
Cons ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
KS ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
TFB2M   10000 perm   2 sec   (6275 perm/sec)   p_kst 6.186000e-01   p_cons 1.698000e-01   p_joint 4.471000e-01

Outputting figure to mutsig2_images.part000000000173/TFB2M.3_1223_10000_0.6186_0.1698_0.4471.png
                gene_name: TFB2M
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
TFCP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
Cons ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
KS ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
TFCP2L1   10000 perm   2 sec   (6114 perm/sec)   p_kst 3.597000e-01   p_cons 2.950000e-01   p_joint 5.108000e-01

Outputting figure to mutsig2_images.part000000000173/TFCP2L1.3_1500_10000_0.3597_0.295_0.5108.png
                gene_name: TFCP2L1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 82 percent done.
TFDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
KS ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
TFDP1   10000 perm   2 sec   (6078 perm/sec)   p_kst 8.176000e-01   p_cons 1.289000e-01   p_joint 5.250000e-01

Joint ci ratio: 2.518493e-02	ci left: 5.408206e-01	ci right 5.546655e-01	k: 10955	n:20000
Cons ci ratio: 7.290257e-02	ci left: 1.216766e-01	ci right 1.309324e-01	k: 2525	n:20000
KS ci ratio: 1.322848e-02	ci left: 8.090424e-01	ci right 8.198660e-01	k: 16290	n:20000
TFDP1   20000 perm   4 sec   (5538 perm/sec)   p_kst 8.145000e-01   p_cons 1.262500e-01   p_joint 5.477500e-01

Outputting figure to mutsig2_images.part000000000173/TFDP1.3_1277_20000_0.8145_0.12625_0.54775.png
                gene_name: TFDP1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 83 percent done.
TCP11L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
TCP11L1   10000 perm   2 sec   (6433 perm/sec)   p_kst 6.910000e-02   p_cons 3.740000e-02   p_joint 4.060000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
KS ci ratio: 1.005299e-01	ci left: 6.708754e-02	ci right 7.423789e-02	k: 1412	n:20000
TCP11L1   20000 perm   4 sec   (5653 perm/sec)   p_kst 7.060000e-02   p_cons 3.770000e-02   p_joint 3.970000e-02

Joint ci ratio: 9.300840e-02	ci left: 5.329426e-02	ci right 5.852549e-02	k: 1676	n:30000
Cons ci ratio: 1.116503e-01	ci left: 3.725903e-02	ci right 4.169739e-02	k: 1183	n:30000
KS ci ratio: 8.147446e-02	ci left: 6.870741e-02	ci right 7.457587e-02	k: 2148	n:30000
TCP11L1   30000 perm   6 sec   (5370 perm/sec)   p_kst 7.160000e-02   p_cons 3.943333e-02   p_joint 5.586667e-02

Joint ci ratio: 5.342498e-02	ci left: 1.154468e-01	ci right 1.218087e-01	k: 4744	n:40000
Cons ci ratio: 9.586298e-02	ci left: 3.819829e-02	ci right 4.206884e-02	k: 1604	n:40000
KS ci ratio: 7.047094e-02	ci left: 6.926417e-02	ci right 7.434820e-02	k: 2871	n:40000
TCP11L1   40000 perm   8 sec   (5183 perm/sec)   p_kst 7.177500e-02   p_cons 4.010000e-02   p_joint 1.186000e-01

Outputting figure to mutsig2_images.part000000000173/TCP11L1.2_1566_40000_0.071775_0.0401_0.1186.png
                gene_name: TCP11L1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 85 percent done.
TCTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
TCTN2   10000 perm   2 sec   (6141 perm/sec)   p_kst 7.572000e-01   p_cons 5.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TCTN2.2_2166_10000_0.7572_0.5719_1.png
                gene_name: TCTN2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
TCTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.334987e-02	ci left: 7.293641e-01	ci right 7.466970e-01	k: 7381	n:10000
Cons ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
TCTN3   10000 perm   2 sec   (6279 perm/sec)   p_kst 1.150000e-02   p_cons 9.823000e-01   p_joint 7.381000e-01

Joint ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
Cons ci ratio: 3.628327e-03	ci left: 9.813219e-01	ci right 9.849357e-01	k: 19664	n:20000
KS ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
TCTN3   20000 perm   4 sec   (5560 perm/sec)   p_kst 1.100000e-02   p_cons 9.832000e-01   p_joint 2.015000e-02

Joint ci ratio: 1.592367e-01	ci left: 1.822150e-02	ci right 2.140579e-02	k: 593	n:30000
Cons ci ratio: 2.955181e-03	ci left: 9.817508e-01	ci right 9.846879e-01	k: 29498	n:30000
KS ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
TCTN3   30000 perm   6 sec   (5264 perm/sec)   p_kst 1.010000e-02   p_cons 9.832667e-01   p_joint 1.976667e-02

Joint ci ratio: 1.368497e-01	ci left: 1.872293e-02	ci right 2.149735e-02	k: 803	n:40000
Cons ci ratio: 2.559962e-03	ci left: 9.819442e-01	ci right 9.844850e-01	k: 39330	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
TCTN3   40000 perm   8 sec   (5072 perm/sec)   p_kst 1.030000e-02   p_cons 9.832500e-01   p_joint 2.007500e-02

Joint ci ratio: 1.237281e-01	ci left: 1.846108e-02	ci right 2.091513e-02	k: 983	n:50000
Cons ci ratio: 2.264962e-03	ci left: 9.824482e-01	ci right 9.846951e-01	k: 49180	n:50000
KS ci ratio: 1.718423e-01	ci left: 9.414392e-03	ci right 1.120315e-02	k: 514	n:50000
TCTN3   50000 perm   10 sec   (4935 perm/sec)   p_kst 1.028000e-02   p_cons 9.836000e-01   p_joint 1.966000e-02

Joint ci ratio: 1.118324e-01	ci left: 1.894334e-02	ci right 2.120341e-02	k: 1203	n:60000
Cons ci ratio: 2.088660e-03	ci left: 9.822083e-01	ci right 9.842779e-01	k: 58996	n:60000
KS ci ratio: 1.557283e-01	ci left: 9.635717e-03	ci right 1.127882e-02	k: 626	n:60000
TCTN3   60000 perm   13 sec   (4799 perm/sec)   p_kst 1.043333e-02   p_cons 9.832667e-01   p_joint 2.005000e-02

Joint ci ratio: 1.036750e-01	ci left: 1.897567e-02	ci right 2.106438e-02	k: 1400	n:70000
Cons ci ratio: 1.934992e-03	ci left: 9.822645e-01	ci right 9.841808e-01	k: 68827	n:70000
KS ci ratio: 1.438293e-01	ci left: 9.744329e-03	ci right 1.126808e-02	k: 734	n:70000
TCTN3   70000 perm   15 sec   (4699 perm/sec)   p_kst 1.048571e-02   p_cons 9.832429e-01   p_joint 2.000000e-02

Joint ci ratio: 9.754458e-02	ci left: 1.882142e-02	ci right 2.076362e-02	k: 1582	n:80000
Cons ci ratio: 1.825937e-03	ci left: 9.820289e-01	ci right 9.838358e-01	k: 78636	n:80000
KS ci ratio: 1.355218e-01	ci left: 9.648154e-03	ci right 1.106269e-02	k: 827	n:80000
TCTN3   80000 perm   17 sec   (4602 perm/sec)   p_kst 1.033750e-02   p_cons 9.829500e-01   p_joint 1.977500e-02

Joint ci ratio: 9.206821e-02	ci left: 1.883463e-02	ci right 2.066318e-02	k: 1776	n:90000
Cons ci ratio: 1.717163e-03	ci left: 9.821683e-01	ci right 9.838670e-01	k: 88473	n:90000
KS ci ratio: 1.279448e-01	ci left: 9.661398e-03	ci right 1.099267e-02	k: 928	n:90000
TCTN3   90000 perm   20 sec   (4516 perm/sec)   p_kst 1.031111e-02   p_cons 9.830333e-01   p_joint 1.973333e-02

Joint ci ratio: 8.771699e-02	ci left: 1.872043e-02	ci right 2.044759e-02	k: 1957	n:100000
Cons ci ratio: 1.635003e-03	ci left: 9.820875e-01	ci right 9.837043e-01	k: 98291	n:100000
KS ci ratio: 1.220514e-01	ci left: 9.586476e-03	ci right 1.084218e-02	k: 1020	n:100000
TCTN3   100000 perm   23 sec   (4430 perm/sec)   p_kst 1.020000e-02   p_cons 9.829100e-01   p_joint 1.957000e-02

Joint ci ratio: 8.423120e-02	ci left: 1.849513e-02	ci right 2.013035e-02	k: 2123	n:110000
Cons ci ratio: 1.555964e-03	ci left: 9.821908e-01	ci right 9.837291e-01	k: 108127	n:110000
KS ci ratio: 1.177618e-01	ci left: 9.385109e-03	ci right 1.056822e-02	k: 1096	n:110000
TCTN3   110000 perm   25 sec   (4353 perm/sec)   p_kst 9.963636e-03   p_cons 9.829727e-01   p_joint 1.930000e-02

Joint ci ratio: 8.054061e-02	ci left: 1.857807e-02	ci right 2.014528e-02	k: 2322	n:120000
Cons ci ratio: 1.487364e-03	ci left: 9.822782e-01	ci right 9.837484e-01	k: 117963	n:120000
KS ci ratio: 1.127354e-01	ci left: 9.412339e-03	ci right 1.054486e-02	k: 1196	n:120000
TCTN3   120000 perm   28 sec   (4280 perm/sec)   p_kst 9.966667e-03   p_cons 9.830250e-01   p_joint 1.935000e-02

Joint ci ratio: 7.700088e-02	ci left: 1.879297e-02	ci right 2.030549e-02	k: 2540	n:130000
Cons ci ratio: 1.430387e-03	ci left: 9.822747e-01	ci right 9.836882e-01	k: 127789	n:130000
KS ci ratio: 1.081759e-01	ci left: 9.458748e-03	ci right 1.054789e-02	k: 1299	n:130000
TCTN3   130000 perm   31 sec   (4210 perm/sec)   p_kst 9.992308e-03   p_cons 9.829923e-01   p_joint 1.953846e-02

Joint ci ratio: 7.426170e-02	ci left: 1.878909e-02	ci right 2.024519e-02	k: 2731	n:140000
Cons ci ratio: 1.383600e-03	ci left: 9.821708e-01	ci right 9.835376e-01	k: 137601	n:140000
KS ci ratio: 1.046190e-01	ci left: 9.408861e-03	ci right 1.045444e-02	k: 1389	n:140000
TCTN3   140000 perm   34 sec   (4139 perm/sec)   p_kst 9.921429e-03   p_cons 9.828643e-01   p_joint 1.950714e-02

Joint ci ratio: 7.152145e-02	ci left: 1.893066e-02	ci right 2.034133e-02	k: 2944	n:150000
Cons ci ratio: 1.334191e-03	ci left: 9.822583e-01	ci right 9.835762e-01	k: 147439	n:150000
KS ci ratio: 1.008082e-01	ci left: 9.476630e-03	ci right 1.048911e-02	k: 1496	n:150000
TCTN3   150000 perm   37 sec   (4075 perm/sec)   p_kst 9.973333e-03   p_cons 9.829267e-01   p_joint 1.962667e-02

Joint ci ratio: 6.948008e-02	ci left: 1.882806e-02	ci right 2.018943e-02	k: 3120	n:160000
Cons ci ratio: 1.289468e-03	ci left: 9.823419e-01	ci right 9.836155e-01	k: 157278	n:160000
KS ci ratio: 9.800465e-02	ci left: 9.414558e-03	ci right 1.039082e-02	k: 1583	n:160000
TCTN3   160000 perm   40 sec   (4015 perm/sec)   p_kst 9.893750e-03   p_cons 9.829875e-01   p_joint 1.950000e-02

Outputting figure to mutsig2_images.part000000000173/TCTN3.2_1880_160000_0.0098937_0.98299_0.0195.png
                gene_name: TCTN3
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0099 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 88 percent done.
TDG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
KS ci ratio: 5.335044e-02	ci left: 3.411431e-01	ci right 3.599440e-01	k: 3505	n:10000
TDG   10000 perm   2 sec   (6553 perm/sec)   p_kst 3.505000e-01   p_cons 2.522000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDG.2_1273_10000_0.3505_0.2522_1.png
                gene_name: TDG
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
TDRKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
Cons ci ratio: 4.147021e-02	ci left: 4.619752e-01	ci right 4.816412e-01	k: 4718	n:10000
KS ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
TDRKH   10000 perm   2 sec   (6325 perm/sec)   p_kst 3.584000e-01   p_cons 4.718000e-01   p_joint 8.356000e-01

Outputting figure to mutsig2_images.part000000000173/TDRKH.2_1734_10000_0.3584_0.4718_0.8356.png
                gene_name: TDRKH
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
TECPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
TECPR1   10000 perm   2 sec   (5491 perm/sec)   p_kst 4.000000e-04   p_cons 8.723000e-01   p_joint 1.000000e-03

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 1.023926e-02	ci left: 8.753652e-01	ci right 8.844240e-01	k: 17599	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
TECPR1   20000 perm   4 sec   (4916 perm/sec)   p_kst 2.000000e-04   p_cons 8.799500e-01   p_joint 4.000000e-04

Joint ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
Cons ci ratio: 8.332976e-03	ci left: 8.769109e-01	ci right 8.842818e-01	k: 26419	n:30000
KS ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
TECPR1   30000 perm   6 sec   (4697 perm/sec)   p_kst 2.333333e-04   p_cons 8.806333e-01   p_joint 1.200000e-03

Joint ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
Cons ci ratio: 7.185806e-03	ci left: 8.783178e-01	ci right 8.846767e-01	k: 35261	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
TECPR1   40000 perm   9 sec   (4556 perm/sec)   p_kst 2.750000e-04   p_cons 8.815250e-01   p_joint 5.250000e-04

Joint ci ratio: 7.405955e-01	ci left: 3.558926e-04	ci right 7.855751e-04	k: 27	n:50000
Cons ci ratio: 6.444481e-03	ci left: 8.780894e-01	ci right 8.837863e-01	k: 44048	n:50000
KS ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
TECPR1   50000 perm   11 sec   (4443 perm/sec)   p_kst 3.800000e-04   p_cons 8.809600e-01   p_joint 5.400000e-04

Joint ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
Cons ci ratio: 5.861228e-03	ci left: 8.791226e-01	ci right 8.843070e-01	k: 52904	n:60000
KS ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
TECPR1   60000 perm   14 sec   (4341 perm/sec)   p_kst 3.333333e-04   p_cons 8.817333e-01   p_joint 4.333333e-04

Joint ci ratio: 7.277697e-01	ci left: 2.658130e-04	ci right 5.780599e-04	k: 28	n:70000
Cons ci ratio: 5.426910e-03	ci left: 8.792989e-01	ci right 8.840979e-01	k: 61720	n:70000
KS ci ratio: 7.838544e-01	ci left: 2.196870e-04	ci right 5.101016e-04	k: 24	n:70000
TECPR1   70000 perm   16 sec   (4251 perm/sec)   p_kst 3.428571e-04   p_cons 8.817143e-01   p_joint 4.000000e-04

Joint ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
Cons ci ratio: 5.070653e-03	ci left: 8.796940e-01	ci right 8.841783e-01	k: 70556	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
TECPR1   80000 perm   19 sec   (4179 perm/sec)   p_kst 3.250000e-04   p_cons 8.819500e-01   p_joint 3.750000e-04

Joint ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
Cons ci ratio: 4.750622e-03	ci left: 8.811397e-01	ci right 8.853467e-01	k: 79493	n:90000
KS ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
TECPR1   90000 perm   22 sec   (4120 perm/sec)   p_kst 3.444444e-04   p_cons 8.832556e-01   p_joint 3.888889e-04

Joint ci ratio: 6.357840e-01	ci left: 2.605271e-04	ci right 5.099606e-04	k: 37	n:100000
Cons ci ratio: 4.665447e-03	ci left: 8.738709e-01	ci right 8.779673e-01	k: 87593	n:100000
KS ci ratio: 6.822684e-01	ci left: 2.188897e-04	ci right 4.517148e-04	k: 32	n:100000
TECPR1   100000 perm   25 sec   (4055 perm/sec)   p_kst 3.200000e-04   p_cons 8.759300e-01   p_joint 3.700000e-04

Joint ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
Cons ci ratio: 4.449493e-03	ci left: 8.739097e-01	ci right 8.778159e-01	k: 96346	n:110000
KS ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
TECPR1   110000 perm   28 sec   (3997 perm/sec)   p_kst 3.363636e-04   p_cons 8.758727e-01   p_joint 3.363636e-04

Joint ci ratio: 6.120940e-01	ci left: 2.381486e-04	ci right 4.538780e-04	k: 40	n:120000
Cons ci ratio: 4.271761e-03	ci left: 8.733923e-01	ci right 8.771395e-01	k: 105033	n:120000
KS ci ratio: 6.120940e-01	ci left: 2.381486e-04	ci right 4.538780e-04	k: 40	n:120000
TECPR1   120000 perm   30 sec   (3941 perm/sec)   p_kst 3.333333e-04   p_cons 8.752750e-01   p_joint 3.333333e-04

Joint ci ratio: 5.908599e-01	ci left: 2.393894e-04	ci right 4.455184e-04	k: 43	n:130000
Cons ci ratio: 4.102833e-03	ci left: 8.735383e-01	ci right 8.771373e-01	k: 113795	n:130000
KS ci ratio: 5.908599e-01	ci left: 2.393894e-04	ci right 4.455184e-04	k: 43	n:130000
TECPR1   130000 perm   33 sec   (3885 perm/sec)   p_kst 3.307692e-04   p_cons 8.753462e-01   p_joint 3.307692e-04

Joint ci ratio: 5.383496e-01	ci left: 2.774127e-04	ci right 4.870510e-04	k: 52	n:140000
Cons ci ratio: 3.959594e-03	ci left: 8.732707e-01	ci right 8.767424e-01	k: 122502	n:140000
KS ci ratio: 5.383496e-01	ci left: 2.774127e-04	ci right 4.870510e-04	k: 52	n:140000
TECPR1   140000 perm   37 sec   (3830 perm/sec)   p_kst 3.714286e-04   p_cons 8.750143e-01   p_joint 3.714286e-04

Joint ci ratio: 5.191163e-01	ci left: 2.820239e-04	ci right 4.847774e-04	k: 56	n:150000
Cons ci ratio: 3.821496e-03	ci left: 8.735504e-01	ci right 8.769017e-01	k: 131285	n:150000
KS ci ratio: 5.191163e-01	ci left: 2.820239e-04	ci right 4.847774e-04	k: 56	n:150000
TECPR1   150000 perm   40 sec   (3776 perm/sec)   p_kst 3.733333e-04   p_cons 8.752333e-01   p_joint 3.733333e-04

Joint ci ratio: 5.018073e-01	ci left: 2.861763e-04	ci right 4.826733e-04	k: 60	n:160000
Cons ci ratio: 3.694460e-03	ci left: 8.739415e-01	ci right 8.771824e-01	k: 140091	n:160000
KS ci ratio: 5.018073e-01	ci left: 2.861763e-04	ci right 4.826733e-04	k: 60	n:160000
TECPR1   160000 perm   43 sec   (3726 perm/sec)   p_kst 3.750000e-04   p_cons 8.755688e-01   p_joint 3.750000e-04

Joint ci ratio: 4.899063e-01	ci left: 2.847816e-04	ci right 4.741188e-04	k: 63	n:170000
Cons ci ratio: 3.588472e-03	ci left: 8.737261e-01	ci right 8.768729e-01	k: 148802	n:170000
KS ci ratio: 4.899063e-01	ci left: 2.847816e-04	ci right 4.741188e-04	k: 63	n:170000
TECPR1   170000 perm   46 sec   (3673 perm/sec)   p_kst 3.705882e-04   p_cons 8.753059e-01   p_joint 3.705882e-04

Joint ci ratio: 4.824288e-01	ci left: 2.787086e-04	ci right 4.602429e-04	k: 65	n:180000
Cons ci ratio: 3.488259e-03	ci left: 8.737147e-01	ci right 8.767732e-01	k: 157545	n:180000
KS ci ratio: 4.824288e-01	ci left: 2.787086e-04	ci right 4.602429e-04	k: 65	n:180000
TECPR1   180000 perm   50 sec   (3621 perm/sec)   p_kst 3.611111e-04   p_cons 8.752500e-01   p_joint 3.611111e-04

Joint ci ratio: 4.718256e-01	ci left: 2.779297e-04	ci right 4.536951e-04	k: 68	n:190000
Cons ci ratio: 3.397633e-03	ci left: 8.735998e-01	ci right 8.765782e-01	k: 166268	n:190000
KS ci ratio: 4.718256e-01	ci left: 2.779297e-04	ci right 4.536951e-04	k: 68	n:190000
TECPR1   190000 perm   53 sec   (3569 perm/sec)   p_kst 3.578947e-04   p_cons 8.750947e-01   p_joint 3.578947e-04

Joint ci ratio: 4.177804e-01	ci left: 3.484314e-04	ci right 5.365436e-04	k: 87	n:200000
Cons ci ratio: 3.313718e-03	ci left: 8.734974e-01	ci right 8.764017e-01	k: 174991	n:200000
KS ci ratio: 4.525566e-01	ci left: 2.905404e-04	ci right 4.644792e-04	k: 74	n:200000
TECPR1   200000 perm   57 sec   (3518 perm/sec)   p_kst 3.700000e-04   p_cons 8.749550e-01   p_joint 4.350000e-04

Joint ci ratio: 4.085977e-01	ci left: 3.489069e-04	ci right 5.320111e-04	k: 91	n:210000
Cons ci ratio: 3.236850e-03	ci left: 8.733291e-01	ci right 8.761653e-01	k: 183698	n:210000
KS ci ratio: 4.437691e-01	ci left: 2.893781e-04	ci right 4.582494e-04	k: 77	n:210000
TECPR1   210000 perm   61 sec   (3471 perm/sec)   p_kst 3.666667e-04   p_cons 8.747524e-01   p_joint 4.333333e-04

Joint ci ratio: 4.063982e-01	ci left: 3.371265e-04	ci right 5.128386e-04	k: 92	n:220000
Cons ci ratio: 3.163643e-03	ci left: 8.732774e-01	ci right 8.760490e-01	k: 192427	n:220000
KS ci ratio: 4.409543e-01	ci left: 2.802632e-04	ci right 4.424693e-04	k: 78	n:220000
TECPR1   220000 perm   64 sec   (3424 perm/sec)   p_kst 3.545455e-04   p_cons 8.746682e-01   p_joint 4.181818e-04

Joint ci ratio: 3.880509e-01	ci left: 3.576927e-04	ci right 5.335581e-04	k: 101	n:230000
Cons ci ratio: 3.094513e-03	ci left: 8.732790e-01	ci right 8.759898e-01	k: 201167	n:230000
KS ci ratio: 4.177925e-01	ci left: 3.029822e-04	ci right 4.665628e-04	k: 87	n:230000
TECPR1   230000 perm   68 sec   (3381 perm/sec)   p_kst 3.782609e-04   p_cons 8.746391e-01   p_joint 4.391304e-04

Joint ci ratio: 3.753819e-01	ci left: 3.691579e-04	ci right 5.432776e-04	k: 108	n:240000
Cons ci ratio: 3.028919e-03	ci left: 8.733396e-01	ci right 8.759930e-01	k: 209921	n:240000
KS ci ratio: 4.042371e-01	ci left: 3.127735e-04	ci right 4.746930e-04	k: 93	n:240000
TECPR1   240000 perm   72 sec   (3338 perm/sec)   p_kst 3.875000e-04   p_cons 8.746708e-01   p_joint 4.500000e-04

Joint ci ratio: 3.703215e-01	ci left: 3.652670e-04	ci right 5.346663e-04	k: 111	n:250000
Cons ci ratio: 2.968626e-03	ci left: 8.732995e-01	ci right 8.758998e-01	k: 218651	n:250000
KS ci ratio: 4.000057e-01	ci left: 3.074532e-04	ci right 4.645107e-04	k: 95	n:250000
TECPR1   250000 perm   76 sec   (3294 perm/sec)   p_kst 3.800000e-04   p_cons 8.746040e-01   p_joint 4.440000e-04

Joint ci ratio: 3.670604e-01	ci left: 3.581976e-04	ci right 5.225046e-04	k: 113	n:260000
Cons ci ratio: 2.912203e-03	ci left: 8.732321e-01	ci right 8.757826e-01	k: 227373	n:260000
KS ci ratio: 3.959044e-01	ci left: 3.025503e-04	ci right 4.551035e-04	k: 97	n:260000
TECPR1   260000 perm   80 sec   (3251 perm/sec)   p_kst 3.730769e-04   p_cons 8.745115e-01   p_joint 4.346154e-04

Joint ci ratio: 3.638840e-01	ci left: 3.516579e-04	ci right 5.112378e-04	k: 115	n:270000
Cons ci ratio: 2.856709e-03	ci left: 8.733375e-01	ci right 8.758396e-01	k: 236140	n:270000
KS ci ratio: 3.919267e-01	ci left: 2.980183e-04	ci right 4.463857e-04	k: 99	n:270000
TECPR1   270000 perm   84 sec   (3211 perm/sec)   p_kst 3.666667e-04   p_cons 8.745926e-01   p_joint 4.259259e-04

Joint ci ratio: 3.577681e-01	ci left: 3.520895e-04	ci right 5.085546e-04	k: 119	n:280000
Cons ci ratio: 2.807009e-03	ci left: 8.732206e-01	ci right 8.756787e-01	k: 244847	n:280000
KS ci ratio: 3.861773e-01	ci left: 2.970409e-04	ci right 4.422008e-04	k: 102	n:280000
TECPR1   280000 perm   88 sec   (3173 perm/sec)   p_kst 3.642857e-04   p_cons 8.744536e-01   p_joint 4.250000e-04

Joint ci ratio: 3.533789e-01	ci left: 3.493692e-04	ci right 5.022835e-04	k: 122	n:290000
Cons ci ratio: 2.757821e-03	ci left: 8.732715e-01	ci right 8.756865e-01	k: 253600	n:290000
KS ci ratio: 3.806738e-01	ci left: 2.961458e-04	ci right 4.382898e-04	k: 105	n:290000
TECPR1   290000 perm   93 sec   (3135 perm/sec)   p_kst 3.620690e-04   p_cons 8.744828e-01   p_joint 4.206897e-04

Joint ci ratio: 3.771336e-01	ci left: 2.923059e-04	ci right 4.309791e-04	k: 107	n:300000
Cons ci ratio: 2.711007e-03	ci left: 8.733293e-01	ci right 8.757034e-01	k: 262356	n:300000
KS ci ratio: 3.771336e-01	ci left: 2.923059e-04	ci right 4.309791e-04	k: 107	n:300000
TECPR1   300000 perm   97 sec   (3097 perm/sec)   p_kst 3.566667e-04   p_cons 8.745200e-01   p_joint 3.566667e-04

Joint ci ratio: 3.385627e-01	ci left: 3.592317e-04	ci right 5.084315e-04	k: 133	n:310000
Cons ci ratio: 2.667714e-03	ci left: 8.732834e-01	ci right 8.756193e-01	k: 271081	n:310000
KS ci ratio: 3.670735e-01	ci left: 3.004220e-04	ci right 4.382328e-04	k: 113	n:310000
TECPR1   310000 perm   101 sec   (3060 perm/sec)   p_kst 3.645161e-04   p_cons 8.744548e-01   p_joint 4.290323e-04

Joint ci ratio: 3.548319e-01	ci left: 3.137677e-04	ci right 4.517945e-04	k: 121	n:320000
Cons ci ratio: 2.624524e-03	ci left: 8.734006e-01	ci right 8.756989e-01	k: 279857	n:320000
KS ci ratio: 3.548319e-01	ci left: 3.137677e-04	ci right 4.517945e-04	k: 121	n:320000
TECPR1   320000 perm   106 sec   (3025 perm/sec)   p_kst 3.781250e-04   p_cons 8.745531e-01   p_joint 3.781250e-04

Joint ci ratio: 3.491542e-01	ci left: 3.153092e-04	ci right 4.512923e-04	k: 125	n:330000
Cons ci ratio: 2.584542e-03	ci left: 8.734105e-01	ci right 8.756738e-01	k: 288600	n:330000
KS ci ratio: 3.491542e-01	ci left: 3.153092e-04	ci right 4.512923e-04	k: 125	n:330000
TECPR1   330000 perm   110 sec   (2991 perm/sec)   p_kst 3.787879e-04   p_cons 8.745455e-01   p_joint 3.787879e-04

Joint ci ratio: 3.424255e-01	ci left: 3.194645e-04	ci right 4.539968e-04	k: 130	n:340000
Cons ci ratio: 2.546778e-03	ci left: 8.733818e-01	ci right 8.756118e-01	k: 297330	n:340000
KS ci ratio: 3.424255e-01	ci left: 3.194645e-04	ci right 4.539968e-04	k: 130	n:340000
TECPR1   340000 perm   115 sec   (2956 perm/sec)   p_kst 3.823529e-04   p_cons 8.745000e-01   p_joint 3.823529e-04

Joint ci ratio: 3.398420e-01	ci left: 3.155616e-04	ci right 4.472276e-04	k: 132	n:350000
Cons ci ratio: 2.508236e-03	ci left: 8.735643e-01	ci right 8.757609e-01	k: 306133	n:350000
KS ci ratio: 3.398420e-01	ci left: 3.155616e-04	ci right 4.472276e-04	k: 132	n:350000
TECPR1   350000 perm   120 sec   (2924 perm/sec)   p_kst 3.771429e-04   p_cons 8.746657e-01   p_joint 3.771429e-04

Joint ci ratio: 3.360733e-01	ci left: 3.144221e-04	ci right 4.438426e-04	k: 135	n:360000
Cons ci ratio: 2.471043e-03	ci left: 8.737675e-01	ci right 8.759320e-01	k: 314947	n:360000
KS ci ratio: 3.360733e-01	ci left: 3.144221e-04	ci right 4.438426e-04	k: 135	n:360000
TECPR1   360000 perm   125 sec   (2892 perm/sec)   p_kst 3.750000e-04   p_cons 8.748528e-01   p_joint 3.750000e-04

Joint ci ratio: 3.312373e-01	ci left: 3.158295e-04	ci right 4.435600e-04	k: 139	n:370000
Cons ci ratio: 2.437076e-03	ci left: 8.738134e-01	ci right 8.759483e-01	k: 323707	n:370000
KS ci ratio: 3.312373e-01	ci left: 3.158295e-04	ci right 4.435600e-04	k: 139	n:370000
TECPR1   370000 perm   129 sec   (2859 perm/sec)   p_kst 3.756757e-04   p_cons 8.748838e-01   p_joint 3.756757e-04

Joint ci ratio: 3.266043e-01	ci left: 3.171755e-04	ci right 4.432797e-04	k: 143	n:380000
Cons ci ratio: 2.405744e-03	ci left: 8.737409e-01	ci right 8.758481e-01	k: 332423	n:380000
KS ci ratio: 3.266043e-01	ci left: 3.171755e-04	ci right 4.432797e-04	k: 143	n:380000
TECPR1   380000 perm   134 sec   (2828 perm/sec)   p_kst 3.763158e-04   p_cons 8.747974e-01   p_joint 3.763158e-04

Joint ci ratio: 3.243604e-01	ci left: 3.137519e-04	ci right 4.374595e-04	k: 145	n:390000
Cons ci ratio: 2.373977e-03	ci left: 8.738216e-01	ci right 8.759010e-01	k: 341197	n:390000
KS ci ratio: 3.243604e-01	ci left: 3.137519e-04	ci right 4.374595e-04	k: 145	n:390000
TECPR1   390000 perm   139 sec   (2799 perm/sec)   p_kst 3.717949e-04   p_cons 8.748641e-01   p_joint 3.717949e-04

Joint ci ratio: 3.210787e-01	ci left: 3.128006e-04	ci right 4.346285e-04	k: 148	n:400000
Cons ci ratio: 2.344051e-03	ci left: 8.738407e-01	ci right 8.758939e-01	k: 349948	n:400000
KS ci ratio: 3.210787e-01	ci left: 3.128006e-04	ci right 4.346285e-04	k: 148	n:400000
TECPR1   400000 perm   144 sec   (2769 perm/sec)   p_kst 3.700000e-04   p_cons 8.748700e-01   p_joint 3.700000e-04

Joint ci ratio: 3.189459e-01	ci left: 3.096575e-04	ci right 4.292965e-04	k: 150	n:410000
Cons ci ratio: 2.313965e-03	ci left: 8.739789e-01	ci right 8.760060e-01	k: 358748	n:410000
KS ci ratio: 3.189459e-01	ci left: 3.096575e-04	ci right 4.292965e-04	k: 150	n:410000
TECPR1   410000 perm   150 sec   (2740 perm/sec)   p_kst 3.658537e-04   p_cons 8.749951e-01   p_joint 3.658537e-04

Joint ci ratio: 3.137925e-01	ci left: 3.132444e-04	ci right 4.319219e-04	k: 155	n:420000
Cons ci ratio: 2.286027e-03	ci left: 8.740128e-01	ci right 8.760154e-01	k: 367507	n:420000
KS ci ratio: 3.137925e-01	ci left: 3.132444e-04	ci right 4.319219e-04	k: 155	n:420000
TECPR1   420000 perm   155 sec   (2713 perm/sec)   p_kst 3.690476e-04   p_cons 8.750167e-01   p_joint 3.690476e-04

Joint ci ratio: 3.118008e-01	ci left: 3.102457e-04	ci right 4.268924e-04	k: 157	n:430000
Cons ci ratio: 2.258692e-03	ci left: 8.740825e-01	ci right 8.760613e-01	k: 376282	n:430000
KS ci ratio: 3.118008e-01	ci left: 3.102457e-04	ci right 4.268924e-04	k: 157	n:430000
TECPR1   430000 perm   160 sec   (2686 perm/sec)   p_kst 3.651163e-04   p_cons 8.750744e-01   p_joint 3.651163e-04

Joint ci ratio: 3.098465e-01	ci left: 3.073855e-04	ci right 4.220893e-04	k: 159	n:440000
Cons ci ratio: 2.232593e-03	ci left: 8.741218e-01	ci right 8.760778e-01	k: 385045	n:440000
KS ci ratio: 3.098465e-01	ci left: 3.073855e-04	ci right 4.220893e-04	k: 159	n:440000
TECPR1   440000 perm   165 sec   (2659 perm/sec)   p_kst 3.613636e-04   p_cons 8.751023e-01   p_joint 3.613636e-04

Joint ci ratio: 3.051153e-01	ci left: 3.108088e-04	ci right 4.246751e-04	k: 164	n:450000
Cons ci ratio: 2.206525e-03	ci left: 8.742442e-01	ci right 8.761776e-01	k: 393846	n:450000
KS ci ratio: 3.051153e-01	ci left: 3.108088e-04	ci right 4.246751e-04	k: 164	n:450000
TECPR1   450000 perm   171 sec   (2632 perm/sec)   p_kst 3.644444e-04   p_cons 8.752133e-01   p_joint 3.644444e-04

Joint ci ratio: 3.023790e-01	ci left: 3.100768e-04	ci right 4.224603e-04	k: 167	n:460000
Cons ci ratio: 2.181890e-03	ci left: 8.743069e-01	ci right 8.762188e-01	k: 402622	n:460000
KS ci ratio: 3.023790e-01	ci left: 3.100768e-04	ci right 4.224603e-04	k: 167	n:460000
TECPR1   460000 perm   177 sec   (2606 perm/sec)   p_kst 3.630435e-04   p_cons 8.752652e-01   p_joint 3.630435e-04

Joint ci ratio: 3.005956e-01	ci left: 3.074129e-04	ci right 4.180482e-04	k: 169	n:470000
Cons ci ratio: 2.157684e-03	ci left: 8.744055e-01	ci right 8.762963e-01	k: 411416	n:470000
KS ci ratio: 3.005956e-01	ci left: 3.074129e-04	ci right 4.180482e-04	k: 169	n:470000
TECPR1   470000 perm   182 sec   (2581 perm/sec)   p_kst 3.595745e-04   p_cons 8.753532e-01   p_joint 3.595745e-04

Joint ci ratio: 2.945906e-01	ci left: 3.145034e-04	ci right 4.250074e-04	k: 176	n:480000
Cons ci ratio: 2.135386e-03	ci left: 8.743851e-01	ci right 8.762562e-01	k: 420155	n:480000
KS ci ratio: 2.945906e-01	ci left: 3.145034e-04	ci right 4.250074e-04	k: 176	n:480000
TECPR1   480000 perm   188 sec   (2556 perm/sec)   p_kst 3.666667e-04   p_cons 8.753229e-01   p_joint 3.666667e-04

Joint ci ratio: 2.921256e-01	ci left: 3.137569e-04	ci right 4.229055e-04	k: 179	n:490000
Cons ci ratio: 2.113093e-03	ci left: 8.744352e-01	ci right 8.762869e-01	k: 428928	n:490000
KS ci ratio: 2.921256e-01	ci left: 3.137569e-04	ci right 4.229055e-04	k: 179	n:490000
TECPR1   490000 perm   194 sec   (2532 perm/sec)   p_kst 3.653061e-04   p_cons 8.753633e-01   p_joint 3.653061e-04

Joint ci ratio: 2.889328e-01	ci left: 3.148989e-04	ci right 4.230287e-04	k: 183	n:500000
Cons ci ratio: 2.022776e-03	ci left: 8.816122e-01	ci right 8.833993e-01	k: 441254	n:500000
KS ci ratio: 2.889328e-01	ci left: 3.148989e-04	ci right 4.230287e-04	k: 183	n:500000
TECPR1   500000 perm   199 sec   (2508 perm/sec)   p_kst 3.660000e-04   p_cons 8.825080e-01   p_joint 3.660000e-04

Joint ci ratio: 2.866060e-01	ci left: 3.141822e-04	ci right 4.210398e-04	k: 186	n:510000
Cons ci ratio: 2.003738e-03	ci left: 8.815285e-01	ci right 8.832985e-01	k: 450032	n:510000
KS ci ratio: 2.866060e-01	ci left: 3.141822e-04	ci right 4.210398e-04	k: 186	n:510000
TECPR1   510000 perm   205 sec   (2485 perm/sec)   p_kst 3.647059e-04   p_cons 8.824157e-01   p_joint 3.647059e-04

Joint ci ratio: 2.835889e-01	ci left: 3.152826e-04	ci right 4.211836e-04	k: 190	n:520000
Cons ci ratio: 1.982835e-03	ci left: 8.816988e-01	ci right 8.834507e-01	k: 458940	n:520000
KS ci ratio: 2.835889e-01	ci left: 3.152826e-04	ci right 4.211836e-04	k: 190	n:520000
TECPR1   520000 perm   211 sec   (2462 perm/sec)   p_kst 3.653846e-04   p_cons 8.825769e-01   p_joint 3.653846e-04

Joint ci ratio: 2.806651e-01	ci left: 3.163472e-04	ci right 4.213165e-04	k: 194	n:530000
Cons ci ratio: 1.964590e-03	ci left: 8.816490e-01	ci right 8.833846e-01	k: 467735	n:530000
KS ci ratio: 2.806651e-01	ci left: 3.163472e-04	ci right 4.213165e-04	k: 194	n:530000
TECPR1   530000 perm   217 sec   (2440 perm/sec)   p_kst 3.660377e-04   p_cons 8.825189e-01   p_joint 3.660377e-04

Joint ci ratio: 2.778300e-01	ci left: 3.173777e-04	ci right 4.214391e-04	k: 198	n:540000
Cons ci ratio: 1.945796e-03	ci left: 8.817125e-01	ci right 8.834316e-01	k: 476590	n:540000
KS ci ratio: 2.778300e-01	ci left: 3.173777e-04	ci right 4.214391e-04	k: 198	n:540000
TECPR1   540000 perm   223 sec   (2418 perm/sec)   p_kst 3.666667e-04   p_cons 8.825741e-01   p_joint 3.666667e-04

Joint ci ratio: 2.730679e-01	ci left: 3.234557e-04	ci right 4.273804e-04	k: 205	n:550000
Cons ci ratio: 1.928343e-03	ci left: 8.816862e-01	ci right 8.833898e-01	k: 485397	n:550000
KS ci ratio: 2.730679e-01	ci left: 3.234557e-04	ci right 4.273804e-04	k: 205	n:550000
TECPR1   550000 perm   230 sec   (2396 perm/sec)   p_kst 3.727273e-04   p_cons 8.825400e-01   p_joint 3.727273e-04

Joint ci ratio: 2.711012e-01	ci left: 3.226714e-04	ci right 4.254703e-04	k: 208	n:560000
Cons ci ratio: 1.910890e-03	ci left: 8.817111e-01	ci right 8.833993e-01	k: 494232	n:560000
KS ci ratio: 2.711012e-01	ci left: 3.226714e-04	ci right 4.254703e-04	k: 208	n:560000
TECPR1   560000 perm   236 sec   (2375 perm/sec)   p_kst 3.714286e-04   p_cons 8.825571e-01   p_joint 3.714286e-04

Joint ci ratio: 2.685435e-01	ci left: 3.235534e-04	ci right 4.254970e-04	k: 212	n:570000
Cons ci ratio: 1.893469e-03	ci left: 8.817826e-01	ci right 8.834556e-01	k: 503094	n:570000
KS ci ratio: 2.685435e-01	ci left: 3.235534e-04	ci right 4.254970e-04	k: 212	n:570000
TECPR1   570000 perm   242 sec   (2354 perm/sec)   p_kst 3.719298e-04   p_cons 8.826211e-01   p_joint 3.719298e-04

Joint ci ratio: 2.672920e-01	ci left: 3.211915e-04	ci right 4.218403e-04	k: 214	n:580000
Cons ci ratio: 1.877531e-03	ci left: 8.817394e-01	ci right 8.833981e-01	k: 511891	n:580000
KS ci ratio: 2.672920e-01	ci left: 3.211915e-04	ci right 4.218403e-04	k: 214	n:580000
TECPR1   580000 perm   248 sec   (2335 perm/sec)   p_kst 3.689655e-04   p_cons 8.825707e-01   p_joint 3.689655e-04

Joint ci ratio: 2.654466e-01	ci left: 3.204928e-04	ci right 4.201140e-04	k: 217	n:590000
Cons ci ratio: 1.861395e-03	ci left: 8.817640e-01	ci right 8.834085e-01	k: 520727	n:590000
KS ci ratio: 2.654466e-01	ci left: 3.204928e-04	ci right 4.201140e-04	k: 217	n:590000
TECPR1   590000 perm   255 sec   (2316 perm/sec)   p_kst 3.677966e-04   p_cons 8.825881e-01   p_joint 3.677966e-04

Joint ci ratio: 2.624536e-01	ci left: 3.229333e-04	ci right 4.219954e-04	k: 222	n:600000
Cons ci ratio: 1.845609e-03	ci left: 8.817945e-01	ci right 8.834251e-01	k: 529567	n:600000
KS ci ratio: 2.624536e-01	ci left: 3.229333e-04	ci right 4.219954e-04	k: 222	n:600000
TECPR1   600000 perm   261 sec   (2296 perm/sec)   p_kst 3.700000e-04   p_cons 8.826117e-01   p_joint 3.700000e-04

Joint ci ratio: 2.601309e-01	ci left: 3.237672e-04	ci right 4.220633e-04	k: 226	n:610000
Cons ci ratio: 1.829551e-03	ci left: 8.818997e-01	ci right 8.835163e-01	k: 538453	n:610000
KS ci ratio: 2.601309e-01	ci left: 3.237672e-04	ci right 4.220633e-04	k: 226	n:610000
TECPR1   610000 perm   268 sec   (2277 perm/sec)   p_kst 3.704918e-04   p_cons 8.827098e-01   p_joint 3.704918e-04

Joint ci ratio: 2.601317e-01	ci left: 3.185451e-04	ci right 4.152560e-04	k: 226	n:620000
Cons ci ratio: 1.814695e-03	ci left: 8.819110e-01	ci right 8.835144e-01	k: 547283	n:620000
KS ci ratio: 2.601317e-01	ci left: 3.185451e-04	ci right 4.152560e-04	k: 226	n:620000
TECPR1   620000 perm   275 sec   (2257 perm/sec)   p_kst 3.645161e-04   p_cons 8.827145e-01   p_joint 3.645161e-04

Joint ci ratio: 2.589936e-01	ci left: 3.164568e-04	ci right 4.120454e-04	k: 228	n:630000
Cons ci ratio: 1.800444e-03	ci left: 8.818933e-01	ci right 8.834841e-01	k: 556095	n:630000
KS ci ratio: 2.589936e-01	ci left: 3.164568e-04	ci right 4.120454e-04	k: 228	n:630000
TECPR1   630000 perm   281 sec   (2238 perm/sec)   p_kst 3.619048e-04   p_cons 8.826905e-01   p_joint 3.619048e-04

Joint ci ratio: 2.556655e-01	ci left: 3.202827e-04	ci right 4.155854e-04	k: 234	n:640000
Cons ci ratio: 1.786254e-03	ci left: 8.819076e-01	ci right 8.834858e-01	k: 564927	n:640000
KS ci ratio: 2.556655e-01	ci left: 3.202827e-04	ci right 4.155854e-04	k: 234	n:640000
TECPR1   640000 perm   288 sec   (2220 perm/sec)   p_kst 3.656250e-04   p_cons 8.826984e-01   p_joint 3.656250e-04

Joint ci ratio: 2.551237e-01	ci left: 3.167951e-04	ci right 4.108287e-04	k: 235	n:650000
Cons ci ratio: 1.772394e-03	ci left: 8.819214e-01	ci right 8.834875e-01	k: 573759	n:650000
KS ci ratio: 2.551237e-01	ci left: 3.167951e-04	ci right 4.108287e-04	k: 235	n:650000
TECPR1   650000 perm   295 sec   (2202 perm/sec)   p_kst 3.615385e-04   p_cons 8.827062e-01   p_joint 3.615385e-04

Joint ci ratio: 2.535176e-01	ci left: 3.162509e-04	ci right 4.094386e-04	k: 238	n:660000
Cons ci ratio: 1.758981e-03	ci left: 8.819197e-01	ci right 8.834739e-01	k: 582581	n:660000
KS ci ratio: 2.535176e-01	ci left: 3.162509e-04	ci right 4.094386e-04	k: 238	n:660000
TECPR1   660000 perm   302 sec   (2184 perm/sec)   p_kst 3.606061e-04   p_cons 8.826985e-01   p_joint 3.606061e-04

Joint ci ratio: 2.514223e-01	ci left: 3.171232e-04	ci right 4.096746e-04	k: 242	n:670000
Cons ci ratio: 1.746170e-03	ci left: 8.818822e-01	ci right 8.834249e-01	k: 591379	n:670000
KS ci ratio: 2.514223e-01	ci left: 3.171232e-04	ci right 4.096746e-04	k: 242	n:670000
TECPR1   670000 perm   309 sec   (2166 perm/sec)   p_kst 3.611940e-04   p_cons 8.826552e-01   p_joint 3.611940e-04

Joint ci ratio: 2.488747e-01	ci left: 3.193517e-04	ci right 4.114629e-04	k: 247	n:680000
Cons ci ratio: 1.732489e-03	ci left: 8.819830e-01	ci right 8.835138e-01	k: 600270	n:680000
KS ci ratio: 2.488747e-01	ci left: 3.193517e-04	ci right 4.114629e-04	k: 247	n:680000
TECPR1   680000 perm   316 sec   (2149 perm/sec)   p_kst 3.632353e-04   p_cons 8.827500e-01   p_joint 3.632353e-04

Joint ci ratio: 2.459172e-01	ci left: 3.228801e-04	ci right 4.147332e-04	k: 253	n:690000
Cons ci ratio: 1.719558e-03	ci left: 8.820285e-01	ci right 8.835480e-01	k: 609125	n:690000
KS ci ratio: 2.459172e-01	ci left: 3.228801e-04	ci right 4.147332e-04	k: 253	n:690000
TECPR1   690000 perm   324 sec   (2133 perm/sec)   p_kst 3.666667e-04   p_cons 8.827899e-01   p_joint 3.666667e-04

Joint ci ratio: 2.435317e-01	ci left: 3.249724e-04	ci right 4.163884e-04	k: 258	n:700000
Cons ci ratio: 1.707678e-03	ci left: 8.819797e-01	ci right 8.834885e-01	k: 617915	n:700000
KS ci ratio: 2.435317e-01	ci left: 3.249724e-04	ci right 4.163884e-04	k: 258	n:700000
TECPR1   700000 perm   331 sec   (2118 perm/sec)   p_kst 3.685714e-04   p_cons 8.827357e-01   p_joint 3.685714e-04

Joint ci ratio: 2.425971e-01	ci left: 3.230407e-04	ci right 4.135120e-04	k: 260	n:710000
Cons ci ratio: 1.695913e-03	ci left: 8.819479e-01	ci right 8.834462e-01	k: 626716	n:710000
KS ci ratio: 2.425971e-01	ci left: 3.230407e-04	ci right 4.135120e-04	k: 260	n:710000
TECPR1   710000 perm   338 sec   (2102 perm/sec)   p_kst 3.661972e-04   p_cons 8.826986e-01   p_joint 3.661972e-04

Joint ci ratio: 2.403061e-01	ci left: 3.250784e-04	ci right 4.151325e-04	k: 265	n:720000
Cons ci ratio: 1.683586e-03	ci left: 8.820158e-01	ci right 8.835034e-01	k: 635588	n:720000
KS ci ratio: 2.403061e-01	ci left: 3.250784e-04	ci right 4.151325e-04	k: 265	n:720000
TECPR1   720000 perm   345 sec   (2086 perm/sec)   p_kst 3.680556e-04   p_cons 8.827611e-01   p_joint 3.680556e-04

Joint ci ratio: 2.389624e-01	ci left: 3.244881e-04	ci right 4.138016e-04	k: 268	n:730000
Cons ci ratio: 1.672011e-03	ci left: 8.820215e-01	ci right 8.834988e-01	k: 644416	n:730000
KS ci ratio: 2.389624e-01	ci left: 3.244881e-04	ci right 4.138016e-04	k: 268	n:730000
TECPR1   730000 perm   352 sec   (2071 perm/sec)   p_kst 3.671233e-04   p_cons 8.827616e-01   p_joint 3.671233e-04

Joint ci ratio: 2.376411e-01	ci left: 3.239151e-04	ci right 4.125054e-04	k: 271	n:740000
Cons ci ratio: 1.661094e-03	ci left: 8.819742e-01	ci right 8.834418e-01	k: 653205	n:740000
KS ci ratio: 2.376411e-01	ci left: 3.239151e-04	ci right 4.125054e-04	k: 271	n:740000
TECPR1   740000 perm   360 sec   (2057 perm/sec)   p_kst 3.662162e-04   p_cons 8.827095e-01   p_joint 3.662162e-04

Joint ci ratio: 2.359127e-01	ci left: 3.246132e-04	ci right 4.126544e-04	k: 275	n:750000
Cons ci ratio: 1.649473e-03	ci left: 8.820431e-01	ci right 8.835006e-01	k: 662080	n:750000
KS ci ratio: 2.359127e-01	ci left: 3.246132e-04	ci right 4.126544e-04	k: 275	n:750000
TECPR1   750000 perm   367 sec   (2042 perm/sec)   p_kst 3.666667e-04   p_cons 8.827733e-01   p_joint 3.666667e-04

Joint ci ratio: 2.346410e-01	ci left: 3.240567e-04	ci right 4.114044e-04	k: 278	n:760000
Cons ci ratio: 1.638937e-03	ci left: 8.820035e-01	ci right 8.834515e-01	k: 670874	n:760000
KS ci ratio: 2.346410e-01	ci left: 3.240567e-04	ci right 4.114044e-04	k: 278	n:760000
TECPR1   760000 perm   375 sec   (2028 perm/sec)   p_kst 3.657895e-04   p_cons 8.827289e-01   p_joint 3.657895e-04

Joint ci ratio: 2.321576e-01	ci left: 3.271848e-04	ci right 4.143084e-04	k: 284	n:770000
Cons ci ratio: 1.628079e-03	ci left: 8.820313e-01	ci right 8.834697e-01	k: 679719	n:770000
KS ci ratio: 2.321576e-01	ci left: 3.271848e-04	ci right 4.143084e-04	k: 284	n:770000
TECPR1   770000 perm   382 sec   (2014 perm/sec)   p_kst 3.688312e-04   p_cons 8.827519e-01   p_joint 3.688312e-04

Joint ci ratio: 2.293576e-01	ci left: 3.314458e-04	ci right 4.184889e-04	k: 291	n:780000
Cons ci ratio: 1.617273e-03	ci left: 8.820790e-01	ci right 8.835079e-01	k: 688580	n:780000
KS ci ratio: 2.293576e-01	ci left: 3.314458e-04	ci right 4.184889e-04	k: 291	n:780000
TECPR1   780000 perm   390 sec   (2000 perm/sec)   p_kst 3.730769e-04   p_cons 8.827949e-01   p_joint 3.730769e-04

Joint ci ratio: 2.281885e-01	ci left: 3.308301e-04	ci right 4.172063e-04	k: 294	n:790000
Cons ci ratio: 1.606621e-03	ci left: 8.821331e-01	ci right 8.835527e-01	k: 697447	n:790000
KS ci ratio: 2.281885e-01	ci left: 3.308301e-04	ci right 4.172063e-04	k: 294	n:790000
TECPR1   790000 perm   398 sec   (1986 perm/sec)   p_kst 3.721519e-04   p_cons 8.828443e-01   p_joint 3.721519e-04

Joint ci ratio: 2.270371e-01	ci left: 3.302309e-04	ci right 4.159547e-04	k: 297	n:800000
Cons ci ratio: 1.596793e-03	ci left: 8.821057e-01	ci right 8.835166e-01	k: 706250	n:800000
KS ci ratio: 2.270371e-01	ci left: 3.302309e-04	ci right 4.159547e-04	k: 297	n:800000
TECPR1   800000 perm   405 sec   (1973 perm/sec)   p_kst 3.712500e-04   p_cons 8.828125e-01   p_joint 3.712500e-04

Joint ci ratio: 2.255285e-01	ci left: 3.308124e-04	ci right 4.160372e-04	k: 301	n:810000
Cons ci ratio: 1.586888e-03	ci left: 8.821124e-01	ci right 8.835145e-01	k: 715080	n:810000
KS ci ratio: 2.255285e-01	ci left: 3.308124e-04	ci right 4.160372e-04	k: 301	n:810000
TECPR1   810000 perm   413 sec   (1960 perm/sec)   p_kst 3.716049e-04   p_cons 8.828148e-01   p_joint 3.716049e-04

Joint ci ratio: 2.251564e-01	ci left: 3.279287e-04	ci right 4.122518e-04	k: 302	n:820000
Cons ci ratio: 1.577555e-03	ci left: 8.820676e-01	ci right 8.834614e-01	k: 723868	n:820000
KS ci ratio: 2.251564e-01	ci left: 3.279287e-04	ci right 4.122518e-04	k: 302	n:820000
TECPR1   820000 perm   421 sec   (1946 perm/sec)   p_kst 3.682927e-04   p_cons 8.827659e-01   p_joint 3.682927e-04

Joint ci ratio: 2.251569e-01	ci left: 3.239777e-04	ci right 4.072851e-04	k: 302	n:830000
Cons ci ratio: 1.568038e-03	ci left: 8.820698e-01	ci right 8.834552e-01	k: 732694	n:830000
KS ci ratio: 2.251569e-01	ci left: 3.239777e-04	ci right 4.072851e-04	k: 302	n:830000
TECPR1   830000 perm   430 sec   (1932 perm/sec)   p_kst 3.638554e-04   p_cons 8.827639e-01   p_joint 3.638554e-04

Joint ci ratio: 2.233216e-01	ci left: 3.257389e-04	ci right 4.087225e-04	k: 307	n:840000
Cons ci ratio: 1.558557e-03	ci left: 8.820899e-01	ci right 8.834670e-01	k: 741535	n:840000
KS ci ratio: 2.233216e-01	ci left: 3.257389e-04	ci right 4.087225e-04	k: 307	n:840000
TECPR1   840000 perm   438 sec   (1918 perm/sec)   p_kst 3.654762e-04   p_cons 8.827798e-01   p_joint 3.654762e-04

Joint ci ratio: 2.222420e-01	ci left: 3.252391e-04	ci right 4.076401e-04	k: 310	n:850000
Cons ci ratio: 1.549342e-03	ci left: 8.820966e-01	ci right 8.834655e-01	k: 750365	n:850000
KS ci ratio: 2.222420e-01	ci left: 3.252391e-04	ci right 4.076401e-04	k: 310	n:850000
TECPR1   850000 perm   446 sec   (1905 perm/sec)   p_kst 3.647059e-04   p_cons 8.827824e-01   p_joint 3.647059e-04

Joint ci ratio: 2.218859e-01	ci left: 3.225553e-04	ci right 4.041275e-04	k: 311	n:860000
Cons ci ratio: 1.539805e-03	ci left: 8.821684e-01	ci right 8.835290e-01	k: 759251	n:860000
KS ci ratio: 2.218859e-01	ci left: 3.225553e-04	ci right 4.041275e-04	k: 311	n:860000
TECPR1   860000 perm   455 sec   (1891 perm/sec)   p_kst 3.616279e-04   p_cons 8.828500e-01   p_joint 3.616279e-04

Joint ci ratio: 2.211783e-01	ci left: 3.210191e-04	ci right 4.019086e-04	k: 313	n:870000
Cons ci ratio: 1.530798e-03	ci left: 8.821902e-01	ci right 8.835428e-01	k: 768095	n:870000
KS ci ratio: 2.211783e-01	ci left: 3.210191e-04	ci right 4.019086e-04	k: 313	n:870000
TECPR1   870000 perm   463 sec   (1879 perm/sec)   p_kst 3.597701e-04   p_cons 8.828678e-01   p_joint 3.597701e-04

Joint ci ratio: 2.197828e-01	ci left: 3.216656e-04	ci right 4.021376e-04	k: 317	n:880000
Cons ci ratio: 1.521805e-03	ci left: 8.822309e-01	ci right 8.835756e-01	k: 776956	n:880000
KS ci ratio: 2.197828e-01	ci left: 3.216656e-04	ci right 4.021376e-04	k: 317	n:880000
TECPR1   880000 perm   471 sec   (1867 perm/sec)   p_kst 3.602273e-04   p_cons 8.829045e-01   p_joint 3.602273e-04

Joint ci ratio: 2.184134e-01	ci left: 3.222991e-04	ci right 4.023598e-04	k: 321	n:890000
Cons ci ratio: 1.513338e-03	ci left: 8.822200e-01	ci right 8.835572e-01	k: 785772	n:890000
KS ci ratio: 2.184134e-01	ci left: 3.222991e-04	ci right 4.023598e-04	k: 321	n:890000
TECPR1   890000 perm   480 sec   (1854 perm/sec)   p_kst 3.606742e-04   p_cons 8.828899e-01   p_joint 3.606742e-04

Joint ci ratio: 2.174031e-01	ci left: 3.218694e-04	ci right 4.014041e-04	k: 324	n:900000
Cons ci ratio: 1.504753e-03	ci left: 8.822451e-01	ci right 8.835747e-01	k: 794620	n:900000
KS ci ratio: 2.174031e-01	ci left: 3.218694e-04	ci right 4.014041e-04	k: 324	n:900000
TECPR1   900000 perm   489 sec   (1842 perm/sec)   p_kst 3.600000e-04   p_cons 8.829111e-01   p_joint 3.600000e-04

Joint ci ratio: 2.134963e-01	ci left: 3.308079e-04	ci right 4.108901e-04	k: 336	n:910000
Cons ci ratio: 1.496392e-03	ci left: 8.822585e-01	ci right 8.835808e-01	k: 803458	n:910000
KS ci ratio: 2.134963e-01	ci left: 3.308079e-04	ci right 4.108901e-04	k: 336	n:910000
TECPR1   910000 perm   497 sec   (1829 perm/sec)   p_kst 3.692308e-04   p_cons 8.829209e-01   p_joint 3.692308e-04

Joint ci ratio: 2.125524e-01	ci left: 3.302991e-04	ci right 4.098585e-04	k: 339	n:920000
Cons ci ratio: 1.487878e-03	ci left: 8.823120e-01	ci right 8.836269e-01	k: 812333	n:920000
KS ci ratio: 2.125524e-01	ci left: 3.302991e-04	ci right 4.098585e-04	k: 339	n:920000
TECPR1   920000 perm   506 sec   (1817 perm/sec)   p_kst 3.684783e-04   p_cons 8.829707e-01   p_joint 3.684783e-04

Joint ci ratio: 2.113130e-01	ci left: 3.308203e-04	ci right 4.099804e-04	k: 343	n:930000
Cons ci ratio: 1.480125e-03	ci left: 8.822782e-01	ci right 8.835861e-01	k: 821128	n:930000
KS ci ratio: 2.113130e-01	ci left: 3.308203e-04	ci right 4.099804e-04	k: 343	n:930000
TECPR1   930000 perm   515 sec   (1804 perm/sec)   p_kst 3.688172e-04   p_cons 8.829333e-01   p_joint 3.688172e-04

Joint ci ratio: 2.097937e-01	ci left: 3.323396e-04	ci right 4.112181e-04	k: 348	n:940000
Cons ci ratio: 1.471945e-03	ci left: 8.823219e-01	ci right 8.836226e-01	k: 829995	n:940000
KS ci ratio: 2.097937e-01	ci left: 3.323396e-04	ci right 4.112181e-04	k: 348	n:940000
TECPR1   940000 perm   524 sec   (1792 perm/sec)   p_kst 3.702128e-04   p_cons 8.829734e-01   p_joint 3.702128e-04

Joint ci ratio: 2.094941e-01	ci left: 3.298387e-04	ci right 4.079973e-04	k: 349	n:950000
Cons ci ratio: 1.463892e-03	ci left: 8.823657e-01	ci right 8.836593e-01	k: 838863	n:950000
KS ci ratio: 2.094941e-01	ci left: 3.298387e-04	ci right 4.079973e-04	k: 349	n:950000
TECPR1   950000 perm   534 sec   (1780 perm/sec)   p_kst 3.673684e-04   p_cons 8.830137e-01   p_joint 3.673684e-04

Joint ci ratio: 2.083071e-01	ci left: 3.303515e-04	ci right 4.081317e-04	k: 353	n:960000
Cons ci ratio: 1.456241e-03	ci left: 8.823700e-01	ci right 8.836569e-01	k: 847694	n:960000
KS ci ratio: 2.083071e-01	ci left: 3.303515e-04	ci right 4.081317e-04	k: 353	n:960000
TECPR1   960000 perm   543 sec   (1768 perm/sec)   p_kst 3.677083e-04   p_cons 8.830146e-01   p_joint 3.677083e-04

Joint ci ratio: 2.068513e-01	ci left: 3.318326e-04	ci right 4.093463e-04	k: 358	n:970000
Cons ci ratio: 1.448644e-03	ci left: 8.823835e-01	ci right 8.836637e-01	k: 856534	n:970000
KS ci ratio: 2.068513e-01	ci left: 3.318326e-04	ci right 4.093463e-04	k: 358	n:970000
TECPR1   970000 perm   552 sec   (1756 perm/sec)   p_kst 3.690722e-04   p_cons 8.830247e-01   p_joint 3.690722e-04

Joint ci ratio: 2.057084e-01	ci left: 3.323174e-04	ci right 4.094615e-04	k: 362	n:980000
Cons ci ratio: 1.441563e-03	ci left: 8.823395e-01	ci right 8.836133e-01	k: 865318	n:980000
KS ci ratio: 2.057084e-01	ci left: 3.323174e-04	ci right 4.094615e-04	k: 362	n:980000
TECPR1   980000 perm   562 sec   (1745 perm/sec)   p_kst 3.693878e-04   p_cons 8.829776e-01   p_joint 3.693878e-04

Joint ci ratio: 2.034780e-01	ci left: 3.366275e-04	ci right 4.138196e-04	k: 370	n:990000
Cons ci ratio: 1.434249e-03	ci left: 8.823450e-01	ci right 8.836124e-01	k: 874150	n:990000
KS ci ratio: 2.034780e-01	ci left: 3.366275e-04	ci right 4.138196e-04	k: 370	n:990000
TECPR1   990000 perm   571 sec   (1733 perm/sec)   p_kst 3.737374e-04   p_cons 8.829798e-01   p_joint 3.737374e-04

Joint ci ratio: 2.029319e-01	ci left: 3.351595e-04	ci right 4.117831e-04	k: 372	n:1000000
Cons ci ratio: 1.427189e-03	ci left: 8.823293e-01	ci right 8.835905e-01	k: 882961	n:1000000
KS ci ratio: 2.029319e-01	ci left: 3.351595e-04	ci right 4.117831e-04	k: 372	n:1000000
TECPR1   1000000 perm   581 sec   (1722 perm/sec)   p_kst 3.720000e-04   p_cons 8.829610e-01   p_joint 3.720000e-04

Joint ci ratio: 2.018525e-01	ci left: 3.356008e-04	ci right 4.118668e-04	k: 376	n:1010000
Cons ci ratio: 1.420049e-03	ci left: 8.823408e-01	ci right 8.835956e-01	k: 891799	n:1010000
KS ci ratio: 2.018525e-01	ci left: 3.356008e-04	ci right 4.118668e-04	k: 376	n:1010000
TECPR1   1010000 perm   590 sec   (1711 perm/sec)   p_kst 3.722772e-04   p_cons 8.829693e-01   p_joint 3.722772e-04

Joint ci ratio: 2.005270e-01	ci left: 3.369656e-04	ci right 4.129775e-04	k: 381	n:1020000
Cons ci ratio: 1.413196e-03	ci left: 8.823255e-01	ci right 8.835743e-01	k: 900610	n:1020000
KS ci ratio: 2.005270e-01	ci left: 3.369656e-04	ci right 4.129775e-04	k: 381	n:1020000
TECPR1   1020000 perm   600 sec   (1700 perm/sec)   p_kst 3.735294e-04   p_cons 8.829510e-01   p_joint 3.735294e-04

Joint ci ratio: 1.989703e-01	ci left: 3.392281e-04	ci right 4.150841e-04	k: 387	n:1030000
Cons ci ratio: 1.406495e-03	ci left: 8.823028e-01	ci right 8.835456e-01	k: 909413	n:1030000
KS ci ratio: 1.989703e-01	ci left: 3.392281e-04	ci right 4.150841e-04	k: 387	n:1030000
TECPR1   1030000 perm   610 sec   (1689 perm/sec)   p_kst 3.757282e-04   p_cons 8.829252e-01   p_joint 3.757282e-04

Joint ci ratio: 1.977004e-01	ci left: 3.405352e-04	ci right 4.161390e-04	k: 392	n:1040000
Cons ci ratio: 1.399633e-03	ci left: 8.823181e-01	ci right 8.835548e-01	k: 918255	n:1040000
KS ci ratio: 1.977004e-01	ci left: 3.405352e-04	ci right 4.161390e-04	k: 392	n:1040000
TECPR1   1040000 perm   620 sec   (1678 perm/sec)   p_kst 3.769231e-04   p_cons 8.829375e-01   p_joint 3.769231e-04

Joint ci ratio: 1.962081e-01	ci left: 3.427246e-04	ci right 4.181715e-04	k: 398	n:1050000
Cons ci ratio: 1.392884e-03	ci left: 8.823312e-01	ci right 8.835619e-01	k: 927095	n:1050000
KS ci ratio: 1.962081e-01	ci left: 3.427246e-04	ci right 4.181715e-04	k: 398	n:1050000
TECPR1   1050000 perm   630 sec   (1667 perm/sec)   p_kst 3.790476e-04   p_cons 8.829476e-01   p_joint 3.790476e-04

Joint ci ratio: 1.952319e-01	ci left: 3.430800e-04	ci right 4.181847e-04	k: 402	n:1060000
Cons ci ratio: 1.386219e-03	ci left: 8.823459e-01	ci right 8.835708e-01	k: 935937	n:1060000
KS ci ratio: 1.952319e-01	ci left: 3.430800e-04	ci right 4.181847e-04	k: 402	n:1060000
TECPR1   1060000 perm   640 sec   (1656 perm/sec)   p_kst 3.792453e-04   p_cons 8.829594e-01   p_joint 3.792453e-04

Joint ci ratio: 1.945093e-01	ci left: 3.425406e-04	ci right 4.172168e-04	k: 405	n:1070000
Cons ci ratio: 1.379593e-03	ci left: 8.823689e-01	ci right 8.835879e-01	k: 944788	n:1070000
KS ci ratio: 1.945093e-01	ci left: 3.425406e-04	ci right 4.172168e-04	k: 405	n:1070000
TECPR1   1070000 perm   650 sec   (1646 perm/sec)   p_kst 3.785047e-04   p_cons 8.829794e-01   p_joint 3.785047e-04

Joint ci ratio: 1.930876e-01	ci left: 3.446550e-04	ci right 4.191784e-04	k: 411	n:1080000
Cons ci ratio: 1.373214e-03	ci left: 8.823682e-01	ci right 8.835816e-01	k: 953614	n:1080000
KS ci ratio: 1.930876e-01	ci left: 3.446550e-04	ci right 4.191784e-04	k: 411	n:1080000
TECPR1   1080000 perm   660 sec   (1637 perm/sec)   p_kst 3.805556e-04   p_cons 8.829759e-01   p_joint 3.805556e-04

Joint ci ratio: 1.916966e-01	ci left: 3.467325e-04	ci right 4.211021e-04	k: 417	n:1090000
Cons ci ratio: 1.366856e-03	ci left: 8.823776e-01	ci right 8.835855e-01	k: 962451	n:1090000
KS ci ratio: 1.916966e-01	ci left: 3.467325e-04	ci right 4.211021e-04	k: 417	n:1090000
TECPR1   1090000 perm   670 sec   (1628 perm/sec)   p_kst 3.825688e-04   p_cons 8.829826e-01   p_joint 3.825688e-04

Joint ci ratio: 1.905602e-01	ci left: 3.479084e-04	ci right 4.220366e-04	k: 422	n:1100000
Cons ci ratio: 1.360898e-03	ci left: 8.823396e-01	ci right 8.835420e-01	k: 971236	n:1100000
KS ci ratio: 1.905602e-01	ci left: 3.479084e-04	ci right 4.220366e-04	k: 422	n:1100000
TECPR1   1100000 perm   680 sec   (1618 perm/sec)   p_kst 3.836364e-04   p_cons 8.829418e-01   p_joint 3.836364e-04

Joint ci ratio: 1.894437e-01	ci left: 3.490643e-04	ci right 4.229529e-04	k: 427	n:1110000
Cons ci ratio: 1.354573e-03	ci left: 8.823699e-01	ci right 8.835668e-01	k: 980096	n:1110000
KS ci ratio: 1.894437e-01	ci left: 3.490643e-04	ci right 4.229529e-04	k: 427	n:1110000
TECPR1   1110000 perm   690 sec   (1609 perm/sec)   p_kst 3.846847e-04   p_cons 8.829694e-01   p_joint 3.846847e-04

Joint ci ratio: 1.885646e-01	ci left: 3.493501e-04	ci right 4.229168e-04	k: 431	n:1120000
Cons ci ratio: 1.348487e-03	ci left: 8.823765e-01	ci right 8.835680e-01	k: 988930	n:1120000
KS ci ratio: 1.885646e-01	ci left: 3.493501e-04	ci right 4.229168e-04	k: 431	n:1120000
TECPR1   1120000 perm   700 sec   (1600 perm/sec)   p_kst 3.848214e-04   p_cons 8.829732e-01   p_joint 3.848214e-04

Joint ci ratio: 1.879134e-01	ci left: 3.487883e-04	ci right 4.219540e-04	k: 434	n:1130000
Cons ci ratio: 1.342724e-03	ci left: 8.823456e-01	ci right 8.835320e-01	k: 997722	n:1130000
KS ci ratio: 1.879134e-01	ci left: 3.487883e-04	ci right 4.219540e-04	k: 434	n:1130000
TECPR1   1130000 perm   710 sec   (1591 perm/sec)   p_kst 3.840708e-04   p_cons 8.829398e-01   p_joint 3.840708e-04

Joint ci ratio: 1.874830e-01	ci left: 3.474007e-04	ci right 4.200894e-04	k: 436	n:1140000
Cons ci ratio: 1.336608e-03	ci left: 8.823813e-01	ci right 8.835624e-01	k: 1006589	n:1140000
KS ci ratio: 1.874830e-01	ci left: 3.474007e-04	ci right 4.200894e-04	k: 436	n:1140000
TECPR1   1140000 perm   721 sec   (1582 perm/sec)   p_kst 3.824561e-04   p_cons 8.829728e-01   p_joint 3.824561e-04

Joint ci ratio: 1.859990e-01	ci left: 3.501822e-04	ci right 4.228076e-04	k: 443	n:1150000
Cons ci ratio: 1.331113e-03	ci left: 8.823327e-01	ci right 8.835088e-01	k: 1015360	n:1150000
KS ci ratio: 1.859990e-01	ci left: 3.501822e-04	ci right 4.228076e-04	k: 443	n:1150000
TECPR1   1150000 perm   731 sec   (1573 perm/sec)   p_kst 3.852174e-04   p_cons 8.829217e-01   p_joint 3.852174e-04

Joint ci ratio: 1.853738e-01	ci left: 3.496294e-04	ci right 4.218690e-04	k: 446	n:1160000
Cons ci ratio: 1.325188e-03	ci left: 8.823627e-01	ci right 8.835336e-01	k: 1024221	n:1160000
KS ci ratio: 1.853738e-01	ci left: 3.496294e-04	ci right 4.218690e-04	k: 446	n:1160000
TECPR1   1160000 perm   742 sec   (1564 perm/sec)   p_kst 3.844828e-04   p_cons 8.829491e-01   p_joint 3.844828e-04

Joint ci ratio: 1.847550e-01	ci left: 3.490864e-04	ci right 4.209460e-04	k: 449	n:1170000
Cons ci ratio: 1.319499e-03	ci left: 8.823674e-01	ci right 8.835333e-01	k: 1033053	n:1170000
KS ci ratio: 1.847550e-01	ci left: 3.490864e-04	ci right 4.209460e-04	k: 449	n:1170000
TECPR1   1170000 perm   752 sec   (1556 perm/sec)   p_kst 3.837607e-04   p_cons 8.829513e-01   p_joint 3.837607e-04

Joint ci ratio: 1.845502e-01	ci left: 3.469363e-04	ci right 4.182653e-04	k: 450	n:1180000
Cons ci ratio: 1.314038e-03	ci left: 8.823474e-01	ci right 8.835084e-01	k: 1041856	n:1180000
KS ci ratio: 1.845502e-01	ci left: 3.469363e-04	ci right 4.182653e-04	k: 450	n:1180000
TECPR1   1180000 perm   763 sec   (1547 perm/sec)   p_kst 3.813559e-04   p_cons 8.829288e-01   p_joint 3.813559e-04

Joint ci ratio: 1.837372e-01	ci left: 3.472273e-04	ci right 4.182666e-04	k: 454	n:1190000
Cons ci ratio: 1.308385e-03	ci left: 8.823689e-01	ci right 8.835250e-01	k: 1050708	n:1190000
KS ci ratio: 1.837372e-01	ci left: 3.472273e-04	ci right 4.182666e-04	k: 454	n:1190000
TECPR1   1190000 perm   774 sec   (1538 perm/sec)   p_kst 3.815126e-04   p_cons 8.829479e-01   p_joint 3.815126e-04

Joint ci ratio: 1.837375e-01	ci left: 3.443337e-04	ci right 4.147811e-04	k: 454	n:1200000
Cons ci ratio: 1.302945e-03	ci left: 8.823676e-01	ci right 8.835189e-01	k: 1059533	n:1200000
KS ci ratio: 1.837375e-01	ci left: 3.443337e-04	ci right 4.147811e-04	k: 454	n:1200000
TECPR1   1200000 perm   785 sec   (1529 perm/sec)   p_kst 3.783333e-04   p_cons 8.829442e-01   p_joint 3.783333e-04

Joint ci ratio: 1.829351e-01	ci left: 3.446420e-04	ci right 4.148105e-04	k: 458	n:1210000
Cons ci ratio: 1.297879e-03	ci left: 8.823175e-01	ci right 8.834642e-01	k: 1068299	n:1210000
KS ci ratio: 1.829351e-01	ci left: 3.446420e-04	ci right 4.148105e-04	k: 458	n:1210000
TECPR1   1210000 perm   796 sec   (1520 perm/sec)   p_kst 3.785124e-04   p_cons 8.828917e-01   p_joint 3.785124e-04

Joint ci ratio: 1.815557e-01	ci left: 3.472931e-04	ci right 4.174095e-04	k: 465	n:1220000
Cons ci ratio: 1.292815e-03	ci left: 8.822772e-01	ci right 8.834193e-01	k: 1077076	n:1220000
KS ci ratio: 1.815557e-01	ci left: 3.472931e-04	ci right 4.174095e-04	k: 465	n:1220000
TECPR1   1220000 perm   807 sec   (1513 perm/sec)   p_kst 3.811475e-04   p_cons 8.828492e-01   p_joint 3.811475e-04

Joint ci ratio: 1.805894e-01	ci left: 3.483504e-04	ci right 4.182650e-04	k: 470	n:1230000
Cons ci ratio: 1.287612e-03	ci left: 8.822694e-01	ci right 8.834069e-01	k: 1085892	n:1230000
KS ci ratio: 1.805894e-01	ci left: 3.483504e-04	ci right 4.182650e-04	k: 470	n:1230000
TECPR1   1230000 perm   817 sec   (1505 perm/sec)   p_kst 3.821138e-04   p_cons 8.828390e-01   p_joint 3.821138e-04

Joint ci ratio: 1.796383e-01	ci left: 3.493916e-04	ci right 4.191057e-04	k: 475	n:1240000
Cons ci ratio: 1.282641e-03	ci left: 8.822342e-01	ci right 8.833673e-01	k: 1094674	n:1240000
KS ci ratio: 1.796383e-01	ci left: 3.493916e-04	ci right 4.191057e-04	k: 475	n:1240000
TECPR1   1240000 perm   829 sec   (1496 perm/sec)   p_kst 3.830645e-04   p_cons 8.828016e-01   p_joint 3.830645e-04

Joint ci ratio: 1.792623e-01	ci left: 3.481246e-04	ci right 4.174247e-04	k: 477	n:1250000
Cons ci ratio: 1.277629e-03	ci left: 8.822156e-01	ci right 8.833442e-01	k: 1103476	n:1250000
KS ci ratio: 1.792623e-01	ci left: 3.481246e-04	ci right 4.174247e-04	k: 477	n:1250000
TECPR1   1250000 perm   840 sec   (1488 perm/sec)   p_kst 3.816000e-04   p_cons 8.827808e-01   p_joint 3.816000e-04

Joint ci ratio: 1.787024e-01	ci left: 3.476360e-04	ci right 4.165994e-04	k: 480	n:1260000
Cons ci ratio: 1.272533e-03	ci left: 8.822204e-01	ci right 8.833445e-01	k: 1112307	n:1260000
KS ci ratio: 1.787024e-01	ci left: 3.476360e-04	ci right 4.165994e-04	k: 480	n:1260000
TECPR1   1260000 perm   851 sec   (1481 perm/sec)   p_kst 3.809524e-04   p_cons 8.827833e-01   p_joint 3.809524e-04

Joint ci ratio: 1.783322e-01	ci left: 3.464031e-04	ci right 4.149642e-04	k: 482	n:1270000
Cons ci ratio: 1.267460e-03	ci left: 8.822314e-01	ci right 8.833511e-01	k: 1121146	n:1270000
KS ci ratio: 1.783322e-01	ci left: 3.464031e-04	ci right 4.149642e-04	k: 482	n:1270000
TECPR1   1270000 perm   862 sec   (1473 perm/sec)   p_kst 3.795276e-04   p_cons 8.827921e-01   p_joint 3.795276e-04

Joint ci ratio: 1.774162e-01	ci left: 3.474292e-04	ci right 4.158022e-04	k: 487	n:1280000
Cons ci ratio: 1.262527e-03	ci left: 8.822290e-01	ci right 8.833443e-01	k: 1129968	n:1280000
KS ci ratio: 1.774162e-01	ci left: 3.474292e-04	ci right 4.158022e-04	k: 487	n:1280000
TECPR1   1280000 perm   873 sec   (1465 perm/sec)   p_kst 3.804688e-04   p_cons 8.827875e-01   p_joint 3.804688e-04

Joint ci ratio: 1.765141e-01	ci left: 3.484402e-04	ci right 4.166264e-04	k: 492	n:1290000
Cons ci ratio: 1.257595e-03	ci left: 8.822359e-01	ci right 8.833469e-01	k: 1138802	n:1290000
KS ci ratio: 1.765141e-01	ci left: 3.484402e-04	ci right 4.166264e-04	k: 492	n:1290000
TECPR1   1290000 perm   885 sec   (1457 perm/sec)   p_kst 3.813953e-04   p_cons 8.827922e-01   p_joint 3.813953e-04

Joint ci ratio: 1.761573e-01	ci left: 3.472305e-04	ci right 4.150279e-04	k: 494	n:1300000
Cons ci ratio: 1.252679e-03	ci left: 8.822497e-01	ci right 8.833563e-01	k: 1147645	n:1300000
KS ci ratio: 1.761573e-01	ci left: 3.472305e-04	ci right 4.150279e-04	k: 494	n:1300000
TECPR1   1300000 perm   897 sec   (1449 perm/sec)   p_kst 3.800000e-04   p_cons 8.828038e-01   p_joint 3.800000e-04

Joint ci ratio: 1.752742e-01	ci left: 3.482288e-04	ci right 4.158442e-04	k: 499	n:1310000
Cons ci ratio: 1.247999e-03	ci left: 8.822334e-01	ci right 8.833359e-01	k: 1156449	n:1310000
KS ci ratio: 1.752742e-01	ci left: 3.482288e-04	ci right 4.158442e-04	k: 499	n:1310000
TECPR1   1310000 perm   909 sec   (1441 perm/sec)   p_kst 3.809160e-04   p_cons 8.827855e-01   p_joint 3.809160e-04

Joint ci ratio: 1.742318e-01	ci left: 3.499374e-04	ci right 4.174379e-04	k: 505	n:1320000
Cons ci ratio: 1.243394e-03	ci left: 8.822136e-01	ci right 8.833120e-01	k: 1165248	n:1320000
KS ci ratio: 1.742318e-01	ci left: 3.499374e-04	ci right 4.174379e-04	k: 505	n:1320000
TECPR1   1320000 perm   921 sec   (1434 perm/sec)   p_kst 3.825758e-04   p_cons 8.827636e-01   p_joint 3.825758e-04

Joint ci ratio: 1.732077e-01	ci left: 3.516214e-04	ci right 4.190065e-04	k: 511	n:1330000
Cons ci ratio: 1.239033e-03	ci left: 8.821617e-01	ci right 8.832562e-01	k: 1174004	n:1330000
KS ci ratio: 1.732077e-01	ci left: 3.516214e-04	ci right 4.190065e-04	k: 511	n:1330000
TECPR1   1330000 perm   933 sec   (1426 perm/sec)   p_kst 3.842105e-04   p_cons 8.827098e-01   p_joint 3.842105e-04

Joint ci ratio: 1.728706e-01	ci left: 3.504252e-04	ci right 4.174367e-04	k: 513	n:1340000
Cons ci ratio: 1.234651e-03	ci left: 8.821218e-01	ci right 8.832123e-01	k: 1182775	n:1340000
KS ci ratio: 1.728706e-01	ci left: 3.504252e-04	ci right 4.174367e-04	k: 513	n:1340000
TECPR1   1340000 perm   945 sec   (1419 perm/sec)   p_kst 3.828358e-04   p_cons 8.826679e-01   p_joint 3.828358e-04

Joint ci ratio: 1.722018e-01	ci left: 3.506645e-04	ci right 4.174354e-04	k: 517	n:1350000
Cons ci ratio: 1.229976e-03	ci left: 8.821397e-01	ci right 8.832261e-01	k: 1191623	n:1350000
KS ci ratio: 1.722018e-01	ci left: 3.506645e-04	ci right 4.174354e-04	k: 517	n:1350000
TECPR1   1350000 perm   957 sec   (1411 perm/sec)   p_kst 3.829630e-04   p_cons 8.826837e-01   p_joint 3.829630e-04

Joint ci ratio: 1.718704e-01	ci left: 3.494934e-04	ci right 4.158999e-04	k: 519	n:1360000
Cons ci ratio: 1.225345e-03	ci left: 8.821588e-01	ci right 8.832411e-01	k: 1200473	n:1360000
KS ci ratio: 1.718704e-01	ci left: 3.494934e-04	ci right 4.158999e-04	k: 519	n:1360000
TECPR1   1360000 perm   969 sec   (1404 perm/sec)   p_kst 3.816176e-04   p_cons 8.827007e-01   p_joint 3.816176e-04

Joint ci ratio: 1.717056e-01	ci left: 3.476408e-04	ci right 4.136254e-04	k: 520	n:1370000
Cons ci ratio: 1.220882e-03	ci left: 8.821578e-01	ci right 8.832362e-01	k: 1209296	n:1370000
KS ci ratio: 1.717056e-01	ci left: 3.476408e-04	ci right 4.136254e-04	k: 520	n:1370000
TECPR1   1370000 perm   981 sec   (1397 perm/sec)   p_kst 3.795620e-04   p_cons 8.826978e-01   p_joint 3.795620e-04

Joint ci ratio: 1.710502e-01	ci left: 3.478959e-04	ci right 4.136509e-04	k: 524	n:1380000
Cons ci ratio: 1.216395e-03	ci left: 8.821692e-01	ci right 8.832437e-01	k: 1218136	n:1380000
KS ci ratio: 1.710502e-01	ci left: 3.478959e-04	ci right 4.136509e-04	k: 524	n:1380000
TECPR1   1380000 perm   994 sec   (1389 perm/sec)   p_kst 3.797101e-04   p_cons 8.827072e-01   p_joint 3.797101e-04

Joint ci ratio: 1.707254e-01	ci left: 3.467704e-04	ci right 4.121754e-04	k: 526	n:1390000
Cons ci ratio: 1.211733e-03	ci left: 8.822187e-01	ci right 8.832891e-01	k: 1227029	n:1390000
KS ci ratio: 1.707254e-01	ci left: 3.467704e-04	ci right 4.121754e-04	k: 526	n:1390000
TECPR1   1390000 perm   1005 sec   (1383 perm/sec)   p_kst 3.784173e-04   p_cons 8.827547e-01   p_joint 3.784173e-04

Joint ci ratio: 1.702416e-01	ci left: 3.463449e-04	ci right 4.114655e-04	k: 529	n:1400000
Cons ci ratio: 1.207459e-03	ci left: 8.822102e-01	ci right 8.832768e-01	k: 1235842	n:1400000
KS ci ratio: 1.702416e-01	ci left: 3.463449e-04	ci right 4.114655e-04	k: 529	n:1400000
TECPR1   1400000 perm   1017 sec   (1376 perm/sec)   p_kst 3.778571e-04   p_cons 8.827443e-01   p_joint 3.778571e-04

Joint ci ratio: 1.691282e-01	ci left: 3.486423e-04	ci right 4.137224e-04	k: 536	n:1410000
Cons ci ratio: 1.203076e-03	ci left: 8.822281e-01	ci right 8.832909e-01	k: 1244692	n:1410000
KS ci ratio: 1.691282e-01	ci left: 3.486423e-04	ci right 4.137224e-04	k: 536	n:1410000
TECPR1   1410000 perm   1030 sec   (1369 perm/sec)   p_kst 3.801418e-04   p_cons 8.827603e-01   p_joint 3.801418e-04

Joint ci ratio: 1.681911e-01	ci left: 3.502340e-04	ci right 4.152124e-04	k: 542	n:1420000
Cons ci ratio: 1.198721e-03	ci left: 8.822494e-01	ci right 8.833082e-01	k: 1253547	n:1420000
KS ci ratio: 1.681911e-01	ci left: 3.502340e-04	ci right 4.152124e-04	k: 542	n:1420000
TECPR1   1420000 perm   1043 sec   (1362 perm/sec)   p_kst 3.816901e-04   p_cons 8.827796e-01   p_joint 3.816901e-04

Joint ci ratio: 1.677284e-01	ci left: 3.497946e-04	ci right 4.144948e-04	k: 545	n:1430000
Cons ci ratio: 1.194328e-03	ci left: 8.822850e-01	ci right 8.833400e-01	k: 1262423	n:1430000
KS ci ratio: 1.677284e-01	ci left: 3.497946e-04	ci right 4.144948e-04	k: 545	n:1430000
TECPR1   1430000 perm   1055 sec   (1355 perm/sec)   p_kst 3.811189e-04   p_cons 8.828133e-01   p_joint 3.811189e-04

Joint ci ratio: 1.674222e-01	ci left: 3.486961e-04	ci right 4.130635e-04	k: 547	n:1440000
Cons ci ratio: 1.190138e-03	ci left: 8.822930e-01	ci right 8.833443e-01	k: 1271260	n:1440000
KS ci ratio: 1.674222e-01	ci left: 3.486961e-04	ci right 4.130635e-04	k: 547	n:1440000
TECPR1   1440000 perm   1068 sec   (1348 perm/sec)   p_kst 3.798611e-04   p_cons 8.828194e-01   p_joint 3.798611e-04

Joint ci ratio: 1.668145e-01	ci left: 3.489345e-04	ci right 4.130886e-04	k: 551	n:1450000
Cons ci ratio: 1.186028e-03	ci left: 8.822947e-01	ci right 8.833424e-01	k: 1280088	n:1450000
KS ci ratio: 1.668145e-01	ci left: 3.489345e-04	ci right 4.130886e-04	k: 551	n:1450000
TECPR1   1450000 perm   1081 sec   (1342 perm/sec)   p_kst 3.800000e-04   p_cons 8.828193e-01   p_joint 3.800000e-04

Joint ci ratio: 1.662133e-01	ci left: 3.491701e-04	ci right 4.131131e-04	k: 555	n:1460000
Cons ci ratio: 1.181835e-03	ci left: 8.823183e-01	ci right 8.833624e-01	k: 1288948	n:1460000
KS ci ratio: 1.662133e-01	ci left: 3.491701e-04	ci right 4.131131e-04	k: 555	n:1460000
TECPR1   1460000 perm   1094 sec   (1335 perm/sec)   p_kst 3.801370e-04   p_cons 8.828411e-01   p_joint 3.801370e-04

Joint ci ratio: 1.656186e-01	ci left: 3.494029e-04	ci right 4.131367e-04	k: 559	n:1470000
Cons ci ratio: 1.177755e-03	ci left: 8.823294e-01	ci right 8.833698e-01	k: 1297790	n:1470000
KS ci ratio: 1.656186e-01	ci left: 3.494029e-04	ci right 4.131367e-04	k: 559	n:1470000
TECPR1   1470000 perm   1107 sec   (1328 perm/sec)   p_kst 3.802721e-04   p_cons 8.828503e-01   p_joint 3.802721e-04

Joint ci ratio: 1.647383e-01	ci left: 3.509286e-04	ci right 4.145667e-04	k: 565	n:1480000
Cons ci ratio: 1.173837e-03	ci left: 8.823193e-01	ci right 8.833562e-01	k: 1306601	n:1480000
KS ci ratio: 1.647383e-01	ci left: 3.509286e-04	ci right 4.145667e-04	k: 565	n:1480000
TECPR1   1480000 perm   1120 sec   (1321 perm/sec)   p_kst 3.817568e-04   p_cons 8.828385e-01   p_joint 3.817568e-04

Joint ci ratio: 1.644481e-01	ci left: 3.498603e-04	ci right 4.131819e-04	k: 567	n:1490000
Cons ci ratio: 1.169706e-03	ci left: 8.823537e-01	ci right 8.833871e-01	k: 1315478	n:1490000
KS ci ratio: 1.644481e-01	ci left: 3.498603e-04	ci right 4.131819e-04	k: 567	n:1490000
TECPR1   1490000 perm   1133 sec   (1315 perm/sec)   p_kst 3.805369e-04   p_cons 8.828711e-01   p_joint 3.805369e-04

Joint ci ratio: 1.643037e-01	ci left: 3.481671e-04	ci right 4.111215e-04	k: 568	n:1500000
Cons ci ratio: 1.165826e-03	ci left: 8.823510e-01	ci right 8.833809e-01	k: 1324300	n:1500000
KS ci ratio: 1.643037e-01	ci left: 3.481671e-04	ci right 4.111215e-04	k: 568	n:1500000
TECPR1   1500000 perm   1147 sec   (1308 perm/sec)   p_kst 3.786667e-04   p_cons 8.828667e-01   p_joint 3.786667e-04

Joint ci ratio: 1.630192e-01	ci left: 3.515776e-04	ci right 4.146029e-04	k: 577	n:1510000
Cons ci ratio: 1.161925e-03	ci left: 8.823589e-01	ci right 8.833853e-01	k: 1333138	n:1510000
KS ci ratio: 1.630192e-01	ci left: 3.515776e-04	ci right 4.146029e-04	k: 577	n:1510000
TECPR1   1510000 perm   1160 sec   (1301 perm/sec)   p_kst 3.821192e-04   p_cons 8.828728e-01   p_joint 3.821192e-04

Joint ci ratio: 1.621795e-01	ci left: 3.530514e-04	ci right 4.159831e-04	k: 583	n:1520000
Cons ci ratio: 1.158147e-03	ci left: 8.823515e-01	ci right 8.833746e-01	k: 1341953	n:1520000
KS ci ratio: 1.621795e-01	ci left: 3.530514e-04	ci right 4.159831e-04	k: 583	n:1520000
TECPR1   1520000 perm   1174 sec   (1295 perm/sec)   p_kst 3.835526e-04   p_cons 8.828638e-01   p_joint 3.835526e-04

Joint ci ratio: 1.616270e-01	ci left: 3.532523e-04	ci right 4.159845e-04	k: 587	n:1530000
Cons ci ratio: 1.153938e-03	ci left: 8.824281e-01	ci right 8.834476e-01	k: 1350896	n:1530000
KS ci ratio: 1.616270e-01	ci left: 3.532523e-04	ci right 4.159845e-04	k: 587	n:1530000
TECPR1   1530000 perm   1187 sec   (1289 perm/sec)   p_kst 3.836601e-04   p_cons 8.829386e-01   p_joint 3.836601e-04

Joint ci ratio: 1.612163e-01	ci left: 3.528278e-04	ci right 4.153100e-04	k: 590	n:1540000
Cons ci ratio: 1.150108e-03	ci left: 8.824438e-01	ci right 8.834599e-01	k: 1359747	n:1540000
KS ci ratio: 1.612163e-01	ci left: 3.528278e-04	ci right 4.153100e-04	k: 590	n:1540000
TECPR1   1540000 perm   1200 sec   (1283 perm/sec)   p_kst 3.831169e-04   p_cons 8.829526e-01   p_joint 3.831169e-04

Joint ci ratio: 1.604040e-01	ci left: 3.542667e-04	ci right 4.166571e-04	k: 596	n:1550000
Cons ci ratio: 1.146444e-03	ci left: 8.824361e-01	ci right 8.834489e-01	k: 1368562	n:1550000
KS ci ratio: 1.604040e-01	ci left: 3.542667e-04	ci right 4.166571e-04	k: 596	n:1550000
TECPR1   1550000 perm   1214 sec   (1277 perm/sec)   p_kst 3.845161e-04   p_cons 8.829432e-01   p_joint 3.845161e-04

Joint ci ratio: 1.597364e-01	ci left: 3.550725e-04	ci right 4.173197e-04	k: 601	n:1560000
Cons ci ratio: 1.142697e-03	ci left: 8.824496e-01	ci right 8.834592e-01	k: 1377410	n:1560000
KS ci ratio: 1.597364e-01	ci left: 3.550725e-04	ci right 4.173197e-04	k: 601	n:1560000
TECPR1   1560000 perm   1228 sec   (1271 perm/sec)   p_kst 3.852564e-04   p_cons 8.829551e-01   p_joint 3.852564e-04

Joint ci ratio: 1.590771e-01	ci left: 3.558686e-04	ci right 4.179732e-04	k: 606	n:1570000
Cons ci ratio: 1.138998e-03	ci left: 8.824611e-01	ci right 8.834674e-01	k: 1386255	n:1570000
KS ci ratio: 1.590771e-01	ci left: 3.558686e-04	ci right 4.179732e-04	k: 606	n:1570000
TECPR1   1570000 perm   1241 sec   (1265 perm/sec)   p_kst 3.859873e-04   p_cons 8.829650e-01   p_joint 3.859873e-04

Joint ci ratio: 1.585555e-01	ci left: 3.560473e-04	ci right 4.179600e-04	k: 610	n:1580000
Cons ci ratio: 1.135397e-03	ci left: 8.824610e-01	ci right 8.834642e-01	k: 1395082	n:1580000
KS ci ratio: 1.585555e-01	ci left: 3.560473e-04	ci right 4.179600e-04	k: 610	n:1580000
TECPR1   1580000 perm   1255 sec   (1259 perm/sec)   p_kst 3.860759e-04   p_cons 8.829633e-01   p_joint 3.860759e-04

Joint ci ratio: 1.572734e-01	ci left: 3.598488e-04	ci right 4.218689e-04	k: 620	n:1590000
Cons ci ratio: 1.131789e-03	ci left: 8.824685e-01	ci right 8.834685e-01	k: 1403921	n:1590000
KS ci ratio: 1.572734e-01	ci left: 3.598488e-04	ci right 4.218689e-04	k: 620	n:1590000
TECPR1   1590000 perm   1269 sec   (1253 perm/sec)   p_kst 3.899371e-04   p_cons 8.829692e-01   p_joint 3.899371e-04

Joint ci ratio: 1.570209e-01	ci left: 3.588006e-04	ci right 4.205313e-04	k: 622	n:1600000
Cons ci ratio: 1.128109e-03	ci left: 8.824953e-01	ci right 8.834920e-01	k: 1412791	n:1600000
KS ci ratio: 1.570209e-01	ci left: 3.588006e-04	ci right 4.205313e-04	k: 622	n:1600000
TECPR1   1600000 perm   1283 sec   (1247 perm/sec)   p_kst 3.887500e-04   p_cons 8.829944e-01   p_joint 3.887500e-04

Joint ci ratio: 1.563945e-01	ci left: 3.595559e-04	ci right 4.211466e-04	k: 627	n:1610000
Cons ci ratio: 1.124681e-03	ci left: 8.824820e-01	ci right 8.834756e-01	k: 1421597	n:1610000
KS ci ratio: 1.563945e-01	ci left: 3.595559e-04	ci right 4.211466e-04	k: 627	n:1610000
TECPR1   1610000 perm   1297 sec   (1241 perm/sec)   p_kst 3.894410e-04   p_cons 8.829795e-01   p_joint 3.894410e-04

Joint ci ratio: 1.562702e-01	ci left: 3.579295e-04	ci right 4.191883e-04	k: 628	n:1620000
Cons ci ratio: 1.121227e-03	ci left: 8.824793e-01	ci right 8.834699e-01	k: 1430420	n:1620000
KS ci ratio: 1.562702e-01	ci left: 3.579295e-04	ci right 4.191883e-04	k: 628	n:1620000
TECPR1   1620000 perm   1311 sec   (1236 perm/sec)   p_kst 3.876543e-04   p_cons 8.829753e-01   p_joint 3.876543e-04

Joint ci ratio: 1.557757e-01	ci left: 3.580918e-04	ci right 4.191664e-04	k: 632	n:1630000
Cons ci ratio: 1.117685e-03	ci left: 8.824988e-01	ci right 8.834863e-01	k: 1439279	n:1630000
KS ci ratio: 1.557757e-01	ci left: 3.580918e-04	ci right 4.191664e-04	k: 632	n:1630000
TECPR1   1630000 perm   1325 sec   (1230 perm/sec)   p_kst 3.877301e-04   p_cons 8.829933e-01   p_joint 3.877301e-04

Joint ci ratio: 1.552858e-01	ci left: 3.582524e-04	ci right 4.191443e-04	k: 636	n:1640000
Cons ci ratio: 1.114161e-03	ci left: 8.825211e-01	ci right 8.835056e-01	k: 1448143	n:1640000
KS ci ratio: 1.552858e-01	ci left: 3.582524e-04	ci right 4.191443e-04	k: 636	n:1640000
TECPR1   1640000 perm   1339 sec   (1225 perm/sec)   p_kst 3.878049e-04   p_cons 8.830140e-01   p_joint 3.878049e-04

Joint ci ratio: 1.551642e-01	ci left: 3.566637e-04	ci right 4.172337e-04	k: 637	n:1650000
Cons ci ratio: 1.110747e-03	ci left: 8.825286e-01	ci right 8.835100e-01	k: 1456983	n:1650000
KS ci ratio: 1.551642e-01	ci left: 3.566637e-04	ci right 4.172337e-04	k: 637	n:1650000
TECPR1   1650000 perm   1353 sec   (1219 perm/sec)   p_kst 3.860606e-04   p_cons 8.830200e-01   p_joint 3.860606e-04

Joint ci ratio: 1.545597e-01	ci left: 3.574104e-04	ci right 4.178489e-04	k: 642	n:1660000
Cons ci ratio: 1.107245e-03	ci left: 8.825584e-01	ci right 8.835367e-01	k: 1465860	n:1660000
KS ci ratio: 1.545597e-01	ci left: 3.574104e-04	ci right 4.178489e-04	k: 642	n:1660000
TECPR1   1660000 perm   1367 sec   (1214 perm/sec)   p_kst 3.867470e-04   p_cons 8.830482e-01   p_joint 3.867470e-04

Joint ci ratio: 1.540812e-01	ci left: 3.575730e-04	ci right 4.178344e-04	k: 646	n:1670000
Cons ci ratio: 1.103965e-03	ci left: 8.825523e-01	ci right 8.835278e-01	k: 1474678	n:1670000
KS ci ratio: 1.540812e-01	ci left: 3.575730e-04	ci right 4.178344e-04	k: 646	n:1670000
TECPR1   1670000 perm   1381 sec   (1209 perm/sec)   p_kst 3.868263e-04   p_cons 8.830407e-01   p_joint 3.868263e-04

Joint ci ratio: 1.533716e-01	ci left: 3.588786e-04	ci right 4.190560e-04	k: 652	n:1680000
Cons ci ratio: 1.100850e-03	ci left: 8.825208e-01	ci right 8.834934e-01	k: 1483453	n:1680000
KS ci ratio: 1.533716e-01	ci left: 3.588786e-04	ci right 4.190560e-04	k: 652	n:1680000
TECPR1   1680000 perm   1395 sec   (1204 perm/sec)   p_kst 3.880952e-04   p_cons 8.830077e-01   p_joint 3.880952e-04

Joint ci ratio: 1.527877e-01	ci left: 3.596004e-04	ci right 4.196482e-04	k: 657	n:1690000
Cons ci ratio: 1.097526e-03	ci left: 8.825340e-01	ci right 8.835037e-01	k: 1492303	n:1690000
KS ci ratio: 1.527877e-01	ci left: 3.596004e-04	ci right 4.196482e-04	k: 657	n:1690000
TECPR1   1690000 perm   1410 sec   (1199 perm/sec)   p_kst 3.887574e-04   p_cons 8.830195e-01   p_joint 3.887574e-04

Joint ci ratio: 1.519813e-01	ci left: 3.614457e-04	ci right 4.214542e-04	k: 664	n:1700000
Cons ci ratio: 1.094241e-03	ci left: 8.825454e-01	ci right 8.835122e-01	k: 1501150	n:1700000
KS ci ratio: 1.519813e-01	ci left: 3.614457e-04	ci right 4.214542e-04	k: 664	n:1700000
TECPR1   1700000 perm   1425 sec   (1193 perm/sec)   p_kst 3.905882e-04   p_cons 8.830294e-01   p_joint 3.905882e-04

Joint ci ratio: 1.516397e-01	ci left: 3.610198e-04	ci right 4.208105e-04	k: 667	n:1710000
Cons ci ratio: 1.091013e-03	ci left: 8.825513e-01	ci right 8.835153e-01	k: 1509988	n:1710000
KS ci ratio: 1.516397e-01	ci left: 3.610198e-04	ci right 4.208105e-04	k: 667	n:1710000
TECPR1   1710000 perm   1439 sec   (1188 perm/sec)   p_kst 3.900585e-04   p_cons 8.830339e-01   p_joint 3.900585e-04

Joint ci ratio: 1.515264e-01	ci left: 3.594801e-04	ci right 4.189674e-04	k: 668	n:1720000
Cons ci ratio: 1.087890e-03	ci left: 8.825426e-01	ci right 8.835038e-01	k: 1518801	n:1720000
KS ci ratio: 1.515264e-01	ci left: 3.594801e-04	ci right 4.189674e-04	k: 668	n:1720000
TECPR1   1720000 perm   1455 sec   (1183 perm/sec)   p_kst 3.883721e-04   p_cons 8.830238e-01   p_joint 3.883721e-04

Joint ci ratio: 1.513005e-01	ci left: 3.585145e-04	ci right 4.177455e-04	k: 670	n:1730000
Cons ci ratio: 1.084666e-03	ci left: 8.825583e-01	ci right 8.835167e-01	k: 1527656	n:1730000
KS ci ratio: 1.513005e-01	ci left: 3.585145e-04	ci right 4.177455e-04	k: 670	n:1730000
TECPR1   1730000 perm   1469 sec   (1177 perm/sec)   p_kst 3.872832e-04   p_cons 8.830382e-01   p_joint 3.872832e-04

Joint ci ratio: 1.504064e-01	ci left: 3.608782e-04	ci right 4.201157e-04	k: 678	n:1740000
Cons ci ratio: 1.081555e-03	ci left: 8.825578e-01	ci right 8.835134e-01	k: 1536483	n:1740000
KS ci ratio: 1.504064e-01	ci left: 3.608782e-04	ci right 4.201157e-04	k: 678	n:1740000
TECPR1   1740000 perm   1484 sec   (1172 perm/sec)   p_kst 3.896552e-04   p_cons 8.830362e-01   p_joint 3.896552e-04

Joint ci ratio: 1.500753e-01	ci left: 3.604659e-04	ci right 4.194937e-04	k: 681	n:1750000
Cons ci ratio: 1.078440e-03	ci left: 8.825629e-01	ci right 8.835158e-01	k: 1545320	n:1750000
KS ci ratio: 1.500753e-01	ci left: 3.604659e-04	ci right 4.194937e-04	k: 681	n:1750000
TECPR1   1750000 perm   1500 sec   (1167 perm/sec)   p_kst 3.891429e-04   p_cons 8.830400e-01   p_joint 3.891429e-04

Joint ci ratio: 1.499655e-01	ci left: 3.589646e-04	ci right 4.176998e-04	k: 682	n:1760000
Cons ci ratio: 1.075483e-03	ci left: 8.825430e-01	ci right 8.834932e-01	k: 1554113	n:1760000
KS ci ratio: 1.499655e-01	ci left: 3.589646e-04	ci right 4.176998e-04	k: 682	n:1760000
TECPR1   1760000 perm   1515 sec   (1162 perm/sec)   p_kst 3.875000e-04   p_cons 8.830187e-01   p_joint 3.875000e-04

Joint ci ratio: 1.496372e-01	ci left: 3.585680e-04	ci right 4.170983e-04	k: 685	n:1770000
Cons ci ratio: 1.072438e-03	ci left: 8.825448e-01	ci right 8.834923e-01	k: 1562944	n:1770000
KS ci ratio: 1.496372e-01	ci left: 3.585680e-04	ci right 4.170983e-04	k: 685	n:1770000
TECPR1   1770000 perm   1530 sec   (1157 perm/sec)   p_kst 3.870056e-04   p_cons 8.830192e-01   p_joint 3.870056e-04

Joint ci ratio: 1.489870e-01	ci left: 3.597984e-04	ci right 4.182516e-04	k: 691	n:1780000
Cons ci ratio: 1.069529e-03	ci left: 8.825252e-01	ci right 8.834702e-01	k: 1571737	n:1780000
KS ci ratio: 1.489870e-01	ci left: 3.597984e-04	ci right 4.182516e-04	k: 691	n:1780000
TECPR1   1780000 perm   1545 sec   (1152 perm/sec)   p_kst 3.882022e-04   p_cons 8.829983e-01   p_joint 3.882022e-04

Joint ci ratio: 1.485583e-01	ci left: 3.599398e-04	ci right 4.182328e-04	k: 695	n:1790000
Cons ci ratio: 1.066520e-03	ci left: 8.825299e-01	ci right 8.834722e-01	k: 1580573	n:1790000
KS ci ratio: 1.485583e-01	ci left: 3.599398e-04	ci right 4.182328e-04	k: 695	n:1790000
TECPR1   1790000 perm   1560 sec   (1147 perm/sec)   p_kst 3.882682e-04   p_cons 8.830017e-01   p_joint 3.882682e-04

Joint ci ratio: 1.482392e-01	ci left: 3.595449e-04	ci right 4.176378e-04	k: 698	n:1800000
Cons ci ratio: 1.063714e-03	ci left: 8.825001e-01	ci right 8.834398e-01	k: 1589347	n:1800000
KS ci ratio: 1.482392e-01	ci left: 3.595449e-04	ci right 4.176378e-04	k: 698	n:1800000
TECPR1   1800000 perm   1576 sec   (1142 perm/sec)   p_kst 3.877778e-04   p_cons 8.829706e-01   p_joint 3.877778e-04

Joint ci ratio: 1.479221e-01	ci left: 3.591545e-04	ci right 4.170492e-04	k: 701	n:1810000
Cons ci ratio: 1.060813e-03	ci left: 8.824932e-01	ci right 8.834304e-01	k: 1598162	n:1810000
KS ci ratio: 1.479221e-01	ci left: 3.591545e-04	ci right 4.170492e-04	k: 701	n:1810000
TECPR1   1810000 perm   1591 sec   (1138 perm/sec)   p_kst 3.872928e-04   p_cons 8.829624e-01   p_joint 3.872928e-04

Joint ci ratio: 1.478170e-01	ci left: 3.577103e-04	ci right 4.153276e-04	k: 702	n:1820000
Cons ci ratio: 1.057719e-03	ci left: 8.825288e-01	ci right 8.834633e-01	k: 1607054	n:1820000
KS ci ratio: 1.478170e-01	ci left: 3.577103e-04	ci right 4.153276e-04	k: 702	n:1820000
TECPR1   1820000 perm   1606 sec   (1133 perm/sec)   p_kst 3.857143e-04   p_cons 8.829967e-01   p_joint 3.857143e-04

Joint ci ratio: 1.473983e-01	ci left: 3.578606e-04	ci right 4.153245e-04	k: 706	n:1830000
Cons ci ratio: 1.054895e-03	ci left: 8.825165e-01	ci right 8.834484e-01	k: 1615859	n:1830000
KS ci ratio: 1.473983e-01	ci left: 3.578606e-04	ci right 4.153245e-04	k: 706	n:1830000
TECPR1   1830000 perm   1621 sec   (1129 perm/sec)   p_kst 3.857923e-04   p_cons 8.829831e-01   p_joint 3.857923e-04

Joint ci ratio: 1.467767e-01	ci left: 3.590566e-04	ci right 4.164480e-04	k: 712	n:1840000
Cons ci ratio: 1.051960e-03	ci left: 8.825303e-01	ci right 8.834598e-01	k: 1624712	n:1840000
KS ci ratio: 1.467767e-01	ci left: 3.590566e-04	ci right 4.164480e-04	k: 712	n:1840000
TECPR1   1840000 perm   1637 sec   (1124 perm/sec)   p_kst 3.869565e-04   p_cons 8.829957e-01   p_joint 3.869565e-04

Joint ci ratio: 1.465713e-01	ci left: 3.581572e-04	ci right 4.153177e-04	k: 714	n:1850000
Cons ci ratio: 1.049218e-03	ci left: 8.825111e-01	ci right 8.834380e-01	k: 1633504	n:1850000
KS ci ratio: 1.465713e-01	ci left: 3.581572e-04	ci right 4.153177e-04	k: 714	n:1850000
TECPR1   1850000 perm   1652 sec   (1120 perm/sec)   p_kst 3.859459e-04   p_cons 8.829751e-01   p_joint 3.859459e-04

Joint ci ratio: 1.463668e-01	ci left: 3.572674e-04	ci right 4.141995e-04	k: 716	n:1860000
Cons ci ratio: 1.046417e-03	ci left: 8.825076e-01	ci right 8.834321e-01	k: 1642325	n:1860000
KS ci ratio: 1.463668e-01	ci left: 3.572674e-04	ci right 4.141995e-04	k: 716	n:1860000
TECPR1   1860000 perm   1668 sec   (1115 perm/sec)   p_kst 3.849462e-04   p_cons 8.829704e-01   p_joint 3.849462e-04

Joint ci ratio: 1.459602e-01	ci left: 3.574177e-04	ci right 4.142017e-04	k: 720	n:1870000
Cons ci ratio: 1.043688e-03	ci left: 8.824945e-01	ci right 8.834166e-01	k: 1651128	n:1870000
KS ci ratio: 1.459602e-01	ci left: 3.574177e-04	ci right 4.142017e-04	k: 720	n:1870000
TECPR1   1870000 perm   1684 sec   (1111 perm/sec)   p_kst 3.850267e-04   p_cons 8.829561e-01   p_joint 3.850267e-04

Joint ci ratio: 1.456576e-01	ci left: 3.570541e-04	ci right 4.136524e-04	k: 723	n:1880000
Cons ci ratio: 1.040821e-03	ci left: 8.825130e-01	ci right 8.834326e-01	k: 1659990	n:1880000
KS ci ratio: 1.456576e-01	ci left: 3.570541e-04	ci right 4.136524e-04	k: 723	n:1880000
TECPR1   1880000 perm   1699 sec   (1106 perm/sec)   p_kst 3.845745e-04   p_cons 8.829734e-01   p_joint 3.845745e-04

Joint ci ratio: 1.453567e-01	ci left: 3.566944e-04	ci right 4.131089e-04	k: 726	n:1890000
Cons ci ratio: 1.038037e-03	ci left: 8.825197e-01	ci right 8.834368e-01	k: 1668830	n:1890000
KS ci ratio: 1.453567e-01	ci left: 3.566944e-04	ci right 4.131089e-04	k: 726	n:1890000
TECPR1   1890000 perm   1715 sec   (1102 perm/sec)   p_kst 3.841270e-04   p_cons 8.829788e-01   p_joint 3.841270e-04

Joint ci ratio: 1.449585e-01	ci left: 3.568459e-04	ci right 4.131163e-04	k: 730	n:1900000
Cons ci ratio: 1.035235e-03	ci left: 8.825342e-01	ci right 8.834488e-01	k: 1677685	n:1900000
KS ci ratio: 1.449585e-01	ci left: 3.568459e-04	ci right 4.131163e-04	k: 730	n:1900000
TECPR1   1900000 perm   1731 sec   (1098 perm/sec)   p_kst 3.842105e-04   p_cons 8.829921e-01   p_joint 3.842105e-04

Joint ci ratio: 1.444652e-01	ci left: 3.575006e-04	ci right 4.136659e-04	k: 735	n:1910000
Cons ci ratio: 1.032503e-03	ci left: 8.825391e-01	ci right 8.834513e-01	k: 1686522	n:1910000
KS ci ratio: 1.444652e-01	ci left: 3.575006e-04	ci right 4.136659e-04	k: 735	n:1910000
TECPR1   1910000 perm   1747 sec   (1093 perm/sec)   p_kst 3.848168e-04   p_cons 8.829958e-01   p_joint 3.848168e-04

Joint ci ratio: 1.440743e-01	ci left: 3.576468e-04	ci right 4.136698e-04	k: 739	n:1920000
Cons ci ratio: 1.029834e-03	ci left: 8.825356e-01	ci right 8.834455e-01	k: 1695343	n:1920000
KS ci ratio: 1.440743e-01	ci left: 3.576468e-04	ci right 4.136698e-04	k: 739	n:1920000
TECPR1   1920000 perm   1763 sec   (1089 perm/sec)   p_kst 3.848958e-04   p_cons 8.829911e-01   p_joint 3.848958e-04

Joint ci ratio: 1.439771e-01	ci left: 3.562931e-04	ci right 4.120633e-04	k: 740	n:1930000
Cons ci ratio: 1.027201e-03	ci left: 8.825291e-01	ci right 8.834366e-01	k: 1704158	n:1930000
KS ci ratio: 1.439771e-01	ci left: 3.562931e-04	ci right 4.120633e-04	k: 740	n:1930000
TECPR1   1930000 perm   1779 sec   (1085 perm/sec)   p_kst 3.834197e-04   p_cons 8.829834e-01   p_joint 3.834197e-04

Joint ci ratio: 1.434938e-01	ci left: 3.569412e-04	ci right 4.126092e-04	k: 745	n:1940000
Cons ci ratio: 1.024547e-03	ci left: 8.825309e-01	ci right 8.834360e-01	k: 1712989	n:1940000
KS ci ratio: 1.434938e-01	ci left: 3.569412e-04	ci right 4.126092e-04	k: 745	n:1940000
TECPR1   1940000 perm   1795 sec   (1081 perm/sec)   p_kst 3.840206e-04   p_cons 8.829840e-01   p_joint 3.840206e-04

Joint ci ratio: 1.433019e-01	ci left: 3.560996e-04	ci right 4.115557e-04	k: 747	n:1950000
Cons ci ratio: 1.022058e-03	ci left: 8.825034e-01	ci right 8.834063e-01	k: 1721763	n:1950000
KS ci ratio: 1.433019e-01	ci left: 3.560996e-04	ci right 4.115557e-04	k: 747	n:1950000
TECPR1   1950000 perm   1812 sec   (1076 perm/sec)   p_kst 3.830769e-04   p_cons 8.829554e-01   p_joint 3.830769e-04

Joint ci ratio: 1.429202e-01	ci left: 3.562505e-04	ci right 4.115697e-04	k: 751	n:1960000
Cons ci ratio: 1.019562e-03	ci left: 8.824812e-01	ci right 8.833819e-01	k: 1730547	n:1960000
KS ci ratio: 1.429202e-01	ci left: 3.562505e-04	ci right 4.115697e-04	k: 751	n:1960000
TECPR1   1960000 perm   1829 sec   (1072 perm/sec)   p_kst 3.831633e-04   p_cons 8.829321e-01   p_joint 3.831633e-04

Joint ci ratio: 1.425416e-01	ci left: 3.564001e-04	ci right 4.115835e-04	k: 755	n:1970000
Cons ci ratio: 1.017002e-03	ci left: 8.824761e-01	ci right 8.833745e-01	k: 1739364	n:1970000
KS ci ratio: 1.425416e-01	ci left: 3.564001e-04	ci right 4.115835e-04	k: 755	n:1970000
TECPR1   1970000 perm   1846 sec   (1067 perm/sec)   p_kst 3.832487e-04   p_cons 8.829259e-01   p_joint 3.832487e-04

Joint ci ratio: 1.419793e-01	ci left: 3.575225e-04	ci right 4.126428e-04	k: 761	n:1980000
Cons ci ratio: 1.014443e-03	ci left: 8.824746e-01	ci right 8.833708e-01	k: 1748188	n:1980000
KS ci ratio: 1.419793e-01	ci left: 3.575225e-04	ci right 4.126428e-04	k: 761	n:1980000
TECPR1   1980000 perm   1863 sec   (1063 perm/sec)   p_kst 3.843434e-04   p_cons 8.829232e-01   p_joint 3.843434e-04

Joint ci ratio: 1.417934e-01	ci left: 3.566953e-04	ci right 4.116099e-04	k: 763	n:1990000
Cons ci ratio: 1.011870e-03	ci left: 8.824801e-01	ci right 8.833740e-01	k: 1757026	n:1990000
KS ci ratio: 1.417934e-01	ci left: 3.566953e-04	ci right 4.116099e-04	k: 763	n:1990000
TECPR1   1990000 perm   1880 sec   (1059 perm/sec)   p_kst 3.834171e-04   p_cons 8.829276e-01   p_joint 3.834171e-04

Joint ci ratio: 1.416082e-01	ci left: 3.558763e-04	ci right 4.105873e-04	k: 765	n:2000000
Cons ci ratio: 1.009430e-03	ci left: 8.824621e-01	ci right 8.833538e-01	k: 1765817	n:2000000
KS ci ratio: 1.416082e-01	ci left: 3.558763e-04	ci right 4.105873e-04	k: 765	n:2000000
TECPR1   2000000 perm   1897 sec   (1054 perm/sec)   p_kst 3.825000e-04   p_cons 8.829085e-01   p_joint 3.825000e-04

Joint ci ratio: 1.412399e-01	ci left: 3.560254e-04	ci right 4.106050e-04	k: 769	n:2010000
Cons ci ratio: 1.006846e-03	ci left: 8.824776e-01	ci right 8.833671e-01	k: 1774675	n:2010000
KS ci ratio: 1.412399e-01	ci left: 3.560254e-04	ci right 4.106050e-04	k: 769	n:2010000
TECPR1   2010000 perm   1914 sec   (1050 perm/sec)   p_kst 3.825871e-04   p_cons 8.829229e-01   p_joint 3.825871e-04

Joint ci ratio: 1.404215e-01	ci left: 3.585614e-04	ci right 4.131846e-04	k: 778	n:2020000
Cons ci ratio: 1.004246e-03	ci left: 8.825004e-01	ci right 8.833876e-01	k: 1783548	n:2020000
KS ci ratio: 1.404215e-01	ci left: 3.585614e-04	ci right 4.131846e-04	k: 778	n:2020000
TECPR1   2020000 perm   1931 sec   (1046 perm/sec)   p_kst 3.851485e-04   p_cons 8.829446e-01   p_joint 3.851485e-04

Joint ci ratio: 1.396171e-01	ci left: 3.610733e-04	ci right 4.157379e-04	k: 787	n:2030000
Cons ci ratio: 1.001804e-03	ci left: 8.824944e-01	ci right 8.833794e-01	k: 1792363	n:2030000
KS ci ratio: 1.396171e-01	ci left: 3.610733e-04	ci right 4.157379e-04	k: 787	n:2030000
TECPR1   2030000 perm   1947 sec   (1042 perm/sec)   p_kst 3.876847e-04   p_cons 8.829374e-01   p_joint 3.876847e-04

Joint ci ratio: 1.391762e-01	ci left: 3.616689e-04	ci right 4.162364e-04	k: 792	n:2040000
Cons ci ratio: 9.993910e-04	ci left: 8.824860e-01	ci right 8.833688e-01	k: 1801173	n:2040000
KS ci ratio: 1.391762e-01	ci left: 3.616689e-04	ci right 4.162364e-04	k: 792	n:2040000
TECPR1   2040000 perm   1964 sec   (1038 perm/sec)   p_kst 3.882353e-04   p_cons 8.829279e-01   p_joint 3.882353e-04

Joint ci ratio: 1.390011e-01	ci left: 3.608463e-04	ci right 4.152155e-04	k: 794	n:2050000
Cons ci ratio: 9.970382e-04	ci left: 8.824688e-01	ci right 8.833496e-01	k: 1809965	n:2050000
KS ci ratio: 1.390011e-01	ci left: 3.608463e-04	ci right 4.152155e-04	k: 794	n:2050000
TECPR1   2050000 perm   1982 sec   (1034 perm/sec)   p_kst 3.873171e-04   p_cons 8.829098e-01   p_joint 3.873171e-04

Joint ci ratio: 1.388266e-01	ci left: 3.600317e-04	ci right 4.142045e-04	k: 796	n:2060000
Cons ci ratio: 9.945548e-04	ci left: 8.824825e-01	ci right 8.833611e-01	k: 1818820	n:2060000
KS ci ratio: 1.388266e-01	ci left: 3.600317e-04	ci right 4.142045e-04	k: 796	n:2060000
TECPR1   2060000 perm   1999 sec   (1031 perm/sec)   p_kst 3.864078e-04   p_cons 8.829223e-01   p_joint 3.864078e-04

Joint ci ratio: 1.384796e-01	ci left: 3.601578e-04	ci right 4.142028e-04	k: 800	n:2070000
Cons ci ratio: 9.922590e-04	ci left: 8.824607e-01	ci right 8.833372e-01	k: 1827602	n:2070000
KS ci ratio: 1.384796e-01	ci left: 3.601578e-04	ci right 4.142028e-04	k: 800	n:2070000
TECPR1   2070000 perm   2016 sec   (1027 perm/sec)   p_kst 3.864734e-04   p_cons 8.828995e-01   p_joint 3.864734e-04

Joint ci ratio: 1.383933e-01	ci left: 3.588904e-04	ci right 4.127089e-04	k: 801	n:2080000
Cons ci ratio: 9.899077e-04	ci left: 8.824541e-01	ci right 8.833285e-01	k: 1836415	n:2080000
KS ci ratio: 1.383933e-01	ci left: 3.588904e-04	ci right 4.127089e-04	k: 801	n:2080000
TECPR1   2080000 perm   2034 sec   (1023 perm/sec)   p_kst 3.850962e-04   p_cons 8.828918e-01   p_joint 3.850962e-04

Joint ci ratio: 1.382211e-01	ci left: 3.580970e-04	ci right 4.117243e-04	k: 803	n:2090000
Cons ci ratio: 9.875456e-04	ci left: 8.824532e-01	ci right 8.833256e-01	k: 1845240	n:2090000
KS ci ratio: 1.382211e-01	ci left: 3.580970e-04	ci right 4.117243e-04	k: 803	n:2090000
TECPR1   2090000 perm   2051 sec   (1019 perm/sec)   p_kst 3.842105e-04   p_cons 8.828900e-01   p_joint 3.842105e-04

Joint ci ratio: 1.378786e-01	ci left: 3.582308e-04	ci right 4.117342e-04	k: 807	n:2100000
Cons ci ratio: 9.852253e-04	ci left: 8.824472e-01	ci right 8.833175e-01	k: 1854054	n:2100000
KS ci ratio: 1.378786e-01	ci left: 3.582308e-04	ci right 4.117342e-04	k: 807	n:2100000
TECPR1   2100000 perm   2068 sec   (1015 perm/sec)   p_kst 3.842857e-04   p_cons 8.828829e-01   p_joint 3.842857e-04

Joint ci ratio: 1.375385e-01	ci left: 3.583634e-04	ci right 4.117438e-04	k: 811	n:2110000
Cons ci ratio: 9.830204e-04	ci left: 8.824203e-01	ci right 8.832886e-01	k: 1862824	n:2110000
KS ci ratio: 1.375385e-01	ci left: 3.583634e-04	ci right 4.117438e-04	k: 811	n:2110000
TECPR1   2110000 perm   2086 sec   (1012 perm/sec)   p_kst 3.843602e-04   p_cons 8.828550e-01   p_joint 3.843602e-04

Joint ci ratio: 1.373695e-01	ci left: 3.575840e-04	ci right 4.107775e-04	k: 813	n:2120000
Cons ci ratio: 9.805819e-04	ci left: 8.824461e-01	ci right 8.833123e-01	k: 1871705	n:2120000
KS ci ratio: 1.373695e-01	ci left: 3.575840e-04	ci right 4.107775e-04	k: 813	n:2120000
TECPR1   2120000 perm   2103 sec   (1008 perm/sec)   p_kst 3.834906e-04   p_cons 8.828797e-01   p_joint 3.834906e-04

Joint ci ratio: 1.369495e-01	ci left: 3.581720e-04	ci right 4.112769e-04	k: 818	n:2130000
Cons ci ratio: 9.782325e-04	ci left: 8.824566e-01	ci right 8.833207e-01	k: 1880554	n:2130000
KS ci ratio: 1.369495e-01	ci left: 3.581720e-04	ci right 4.112769e-04	k: 818	n:2130000
TECPR1   2130000 perm   2120 sec   (1004 perm/sec)   p_kst 3.840376e-04   p_cons 8.828892e-01   p_joint 3.840376e-04

Joint ci ratio: 1.364505e-01	ci left: 3.592062e-04	ci right 4.122546e-04	k: 824	n:2140000
Cons ci ratio: 9.761160e-04	ci left: 8.824212e-01	ci right 8.832834e-01	k: 1889305	n:2140000
KS ci ratio: 1.364505e-01	ci left: 3.592062e-04	ci right 4.122546e-04	k: 824	n:2140000
TECPR1   2140000 perm   2138 sec   (1001 perm/sec)   p_kst 3.850467e-04   p_cons 8.828528e-01   p_joint 3.850467e-04

Joint ci ratio: 1.359570e-01	ci left: 3.602311e-04	ci right 4.132228e-04	k: 830	n:2150000
Cons ci ratio: 9.737569e-04	ci left: 8.824406e-01	ci right 8.833007e-01	k: 1898173	n:2150000
KS ci ratio: 1.359570e-01	ci left: 3.602311e-04	ci right 4.132228e-04	k: 830	n:2150000
TECPR1   2150000 perm   2156 sec   (997 perm/sec)   p_kst 3.860465e-04   p_cons 8.828712e-01   p_joint 3.860465e-04

Joint ci ratio: 1.353879e-01	ci left: 3.616941e-04	ci right 4.146604e-04	k: 837	n:2160000
Cons ci ratio: 9.715452e-04	ci left: 8.824320e-01	ci right 8.832902e-01	k: 1906981	n:2160000
KS ci ratio: 1.353879e-01	ci left: 3.616941e-04	ci right 4.146604e-04	k: 837	n:2160000
TECPR1   2160000 perm   2174 sec   (993 perm/sec)   p_kst 3.875000e-04   p_cons 8.828616e-01   p_joint 3.875000e-04

Joint ci ratio: 1.353880e-01	ci left: 3.600273e-04	ci right 4.127495e-04	k: 837	n:2170000
Cons ci ratio: 9.693119e-04	ci left: 8.824313e-01	ci right 8.832875e-01	k: 1915806	n:2170000
KS ci ratio: 1.353880e-01	ci left: 3.600273e-04	ci right 4.127495e-04	k: 837	n:2170000
TECPR1   2170000 perm   2193 sec   (990 perm/sec)   p_kst 3.857143e-04   p_cons 8.828599e-01   p_joint 3.857143e-04

Joint ci ratio: 1.349858e-01	ci left: 3.605918e-04	ci right 4.132273e-04	k: 842	n:2180000
Cons ci ratio: 9.670188e-04	ci left: 8.824467e-01	ci right 8.833009e-01	k: 1924666	n:2180000
KS ci ratio: 1.349858e-01	ci left: 3.605918e-04	ci right 4.132273e-04	k: 842	n:2180000
TECPR1   2180000 perm   2211 sec   (986 perm/sec)   p_kst 3.862385e-04   p_cons 8.828743e-01   p_joint 3.862385e-04

Joint ci ratio: 1.345873e-01	ci left: 3.611514e-04	ci right 4.137004e-04	k: 847	n:2190000
Cons ci ratio: 9.648441e-04	ci left: 8.824400e-01	ci right 8.832923e-01	k: 1933478	n:2190000
KS ci ratio: 1.345873e-01	ci left: 3.611514e-04	ci right 4.137004e-04	k: 847	n:2190000
TECPR1   2190000 perm   2229 sec   (983 perm/sec)   p_kst 3.867580e-04   p_cons 8.828667e-01   p_joint 3.867580e-04

Joint ci ratio: 1.341136e-01	ci left: 3.621454e-04	ci right 4.146389e-04	k: 853	n:2200000
Cons ci ratio: 9.626417e-04	ci left: 8.824425e-01	ci right 8.832928e-01	k: 1942310	n:2200000
KS ci ratio: 1.341136e-01	ci left: 3.621454e-04	ci right 4.146389e-04	k: 853	n:2200000
TECPR1   2200000 perm   2247 sec   (979 perm/sec)   p_kst 3.877273e-04   p_cons 8.828682e-01   p_joint 3.877273e-04

Joint ci ratio: 1.338006e-01	ci left: 3.622561e-04	ci right 4.146332e-04	k: 857	n:2210000
Cons ci ratio: 9.605258e-04	ci left: 8.824296e-01	ci right 8.832780e-01	k: 1951108	n:2210000
KS ci ratio: 1.338006e-01	ci left: 3.622561e-04	ci right 4.146332e-04	k: 857	n:2210000
TECPR1   2210000 perm   2266 sec   (975 perm/sec)   p_kst 3.877828e-04   p_cons 8.828543e-01   p_joint 3.877828e-04

Joint ci ratio: 1.332580e-01	ci left: 3.636721e-04	ci right 4.160239e-04	k: 864	n:2220000
Cons ci ratio: 9.585155e-04	ci left: 8.823969e-01	ci right 8.832435e-01	k: 1959862	n:2220000
KS ci ratio: 1.332580e-01	ci left: 3.636721e-04	ci right 4.160239e-04	k: 864	n:2220000
TECPR1   2220000 perm   2284 sec   (972 perm/sec)   p_kst 3.891892e-04   p_cons 8.828207e-01   p_joint 3.891892e-04

Joint ci ratio: 1.328745e-01	ci left: 3.642088e-04	ci right 4.164751e-04	k: 869	n:2230000
Cons ci ratio: 9.563478e-04	ci left: 8.824014e-01	ci right 8.832461e-01	k: 1968698	n:2230000
KS ci ratio: 1.328745e-01	ci left: 3.642088e-04	ci right 4.164751e-04	k: 869	n:2230000
TECPR1   2230000 perm   2303 sec   (968 perm/sec)   p_kst 3.896861e-04   p_cons 8.828242e-01   p_joint 3.896861e-04

Joint ci ratio: 1.325701e-01	ci left: 3.643093e-04	ci right 4.164608e-04	k: 873	n:2240000
Cons ci ratio: 9.541515e-04	ci left: 8.824152e-01	ci right 8.832580e-01	k: 1977555	n:2240000
KS ci ratio: 1.325701e-01	ci left: 3.643093e-04	ci right 4.164608e-04	k: 873	n:2240000
TECPR1   2240000 perm   2322 sec   (965 perm/sec)   p_kst 3.897321e-04   p_cons 8.828371e-01   p_joint 3.897321e-04

Joint ci ratio: 1.321925e-01	ci left: 3.648388e-04	ci right 4.169056e-04	k: 878	n:2250000
Cons ci ratio: 9.519560e-04	ci left: 8.824320e-01	ci right 8.832728e-01	k: 1986419	n:2250000
KS ci ratio: 1.321925e-01	ci left: 3.648388e-04	ci right 4.169056e-04	k: 878	n:2250000
TECPR1   2250000 perm   2341 sec   (961 perm/sec)   p_kst 3.902222e-04   p_cons 8.828529e-01   p_joint 3.902222e-04

Joint ci ratio: 1.321174e-01	ci left: 3.636523e-04	ci right 4.155180e-04	k: 879	n:2260000
Cons ci ratio: 9.498587e-04	ci left: 8.824304e-01	ci right 8.832695e-01	k: 1995242	n:2260000
KS ci ratio: 1.321174e-01	ci left: 3.636523e-04	ci right 4.155180e-04	k: 879	n:2260000
TECPR1   2260000 perm   2359 sec   (958 perm/sec)   p_kst 3.889381e-04   p_cons 8.828504e-01   p_joint 3.889381e-04

Joint ci ratio: 1.319676e-01	ci left: 3.629023e-04	ci right 4.145977e-04	k: 881	n:2270000
Cons ci ratio: 9.477128e-04	ci left: 8.824426e-01	ci right 8.832797e-01	k: 2004096	n:2270000
KS ci ratio: 1.319676e-01	ci left: 3.629023e-04	ci right 4.145977e-04	k: 881	n:2270000
TECPR1   2270000 perm   2378 sec   (955 perm/sec)   p_kst 3.881057e-04   p_cons 8.828617e-01   p_joint 3.881057e-04

Joint ci ratio: 1.314469e-01	ci left: 3.642796e-04	ci right 4.159505e-04	k: 888	n:2280000
Cons ci ratio: 9.455432e-04	ci left: 8.824630e-01	ci right 8.832983e-01	k: 2012969	n:2280000
KS ci ratio: 1.314469e-01	ci left: 3.642796e-04	ci right 4.159505e-04	k: 888	n:2280000
TECPR1   2280000 perm   2396 sec   (952 perm/sec)   p_kst 3.894737e-04   p_cons 8.828811e-01   p_joint 3.894737e-04

Joint ci ratio: 1.313731e-01	ci left: 3.631112e-04	ci right 4.145852e-04	k: 889	n:2290000
Cons ci ratio: 9.434302e-04	ci left: 8.824741e-01	ci right 8.833075e-01	k: 2021821	n:2290000
KS ci ratio: 1.313731e-01	ci left: 3.631112e-04	ci right 4.145852e-04	k: 889	n:2290000
TECPR1   2290000 perm   2415 sec   (948 perm/sec)   p_kst 3.882096e-04   p_cons 8.828913e-01   p_joint 3.882096e-04

Joint ci ratio: 1.312258e-01	ci left: 3.623734e-04	ci right 4.136808e-04	k: 891	n:2300000
Cons ci ratio: 9.413709e-04	ci left: 8.824764e-01	ci right 8.833079e-01	k: 2030653	n:2300000
KS ci ratio: 1.312258e-01	ci left: 3.623734e-04	ci right 4.136808e-04	k: 891	n:2300000
TECPR1   2300000 perm   2434 sec   (945 perm/sec)   p_kst 3.873913e-04   p_cons 8.828926e-01   p_joint 3.873913e-04

Joint ci ratio: 1.310790e-01	ci left: 3.616421e-04	ci right 4.127842e-04	k: 893	n:2310000
Cons ci ratio: 9.394961e-04	ci left: 8.824409e-01	ci right 8.832707e-01	k: 2039398	n:2310000
KS ci ratio: 1.310790e-01	ci left: 3.616421e-04	ci right 4.127842e-04	k: 893	n:2310000
TECPR1   2310000 perm   2454 sec   (941 perm/sec)   p_kst 3.865801e-04   p_cons 8.828563e-01   p_joint 3.865801e-04

Joint ci ratio: 1.307140e-01	ci left: 3.621679e-04	ci right 4.132306e-04	k: 898	n:2320000
Cons ci ratio: 9.374527e-04	ci left: 8.824454e-01	ci right 8.832735e-01	k: 2048235	n:2320000
KS ci ratio: 1.307140e-01	ci left: 3.621679e-04	ci right 4.132306e-04	k: 898	n:2320000
TECPR1   2320000 perm   2473 sec   (938 perm/sec)   p_kst 3.870690e-04   p_cons 8.828599e-01   p_joint 3.870690e-04

Joint ci ratio: 1.303519e-01	ci left: 3.626894e-04	ci right 4.136731e-04	k: 903	n:2330000
Cons ci ratio: 9.355642e-04	ci left: 8.824185e-01	ci right 8.832449e-01	k: 2056999	n:2330000
KS ci ratio: 1.303519e-01	ci left: 3.626894e-04	ci right 4.136731e-04	k: 903	n:2330000
TECPR1   2330000 perm   2492 sec   (935 perm/sec)   p_kst 3.875536e-04   p_cons 8.828322e-01   p_joint 3.875536e-04

Joint ci ratio: 1.302800e-01	ci left: 3.615528e-04	ci right 4.123465e-04	k: 904	n:2340000
Cons ci ratio: 9.334980e-04	ci left: 8.824338e-01	ci right 8.832584e-01	k: 2065861	n:2340000
KS ci ratio: 1.302800e-01	ci left: 3.615528e-04	ci right 4.123465e-04	k: 904	n:2340000
TECPR1   2340000 perm   2512 sec   (932 perm/sec)   p_kst 3.863248e-04   p_cons 8.828466e-01   p_joint 3.863248e-04

Joint ci ratio: 1.300646e-01	ci left: 3.612493e-04	ci right 4.119100e-04	k: 907	n:2350000
Cons ci ratio: 9.315241e-04	ci left: 8.824315e-01	ci right 8.832543e-01	k: 2074682	n:2350000
KS ci ratio: 1.300646e-01	ci left: 3.612493e-04	ci right 4.119100e-04	k: 907	n:2350000
TECPR1   2350000 perm   2532 sec   (928 perm/sec)   p_kst 3.859574e-04   p_cons 8.828434e-01   p_joint 3.859574e-04

Joint ci ratio: 1.299931e-01	ci left: 3.601286e-04	ci right 4.106021e-04	k: 908	n:2360000
Cons ci ratio: 9.295340e-04	ci left: 8.824356e-01	ci right 8.832567e-01	k: 2083518	n:2360000
KS ci ratio: 1.299931e-01	ci left: 3.601286e-04	ci right 4.106021e-04	k: 908	n:2360000
TECPR1   2360000 perm   2552 sec   (925 perm/sec)   p_kst 3.847458e-04   p_cons 8.828466e-01   p_joint 3.847458e-04

Joint ci ratio: 1.297080e-01	ci left: 3.602420e-04	ci right 4.106122e-04	k: 912	n:2370000
Cons ci ratio: 9.274696e-04	ci left: 8.824591e-01	ci right 8.832784e-01	k: 2092400	n:2370000
KS ci ratio: 1.297080e-01	ci left: 3.602420e-04	ci right 4.106122e-04	k: 912	n:2370000
TECPR1   2370000 perm   2571 sec   (922 perm/sec)   p_kst 3.848101e-04   p_cons 8.828692e-01   p_joint 3.848101e-04

Joint ci ratio: 1.294955e-01	ci left: 3.599480e-04	ci right 4.101883e-04	k: 915	n:2380000
Cons ci ratio: 9.255034e-04	ci left: 8.824635e-01	ci right 8.832810e-01	k: 2101237	n:2380000
KS ci ratio: 1.294955e-01	ci left: 3.599480e-04	ci right 4.101883e-04	k: 915	n:2380000
TECPR1   2380000 perm   2591 sec   (919 perm/sec)   p_kst 3.844538e-04   p_cons 8.828727e-01   p_joint 3.844538e-04

Joint ci ratio: 1.290734e-01	ci left: 3.608712e-04	ci right 4.110636e-04	k: 921	n:2390000
Cons ci ratio: 9.235628e-04	ci left: 8.824649e-01	ci right 8.832807e-01	k: 2110067	n:2390000
KS ci ratio: 1.290734e-01	ci left: 3.608712e-04	ci right 4.110636e-04	k: 921	n:2390000
TECPR1   2390000 perm   2610 sec   (916 perm/sec)   p_kst 3.853556e-04   p_cons 8.828732e-01   p_joint 3.853556e-04

Joint ci ratio: 1.288639e-01	ci left: 3.605772e-04	ci right 4.106412e-04	k: 924	n:2400000
Cons ci ratio: 9.216102e-04	ci left: 8.824717e-01	ci right 8.832857e-01	k: 2118910	n:2400000
KS ci ratio: 1.288639e-01	ci left: 3.605772e-04	ci right 4.106412e-04	k: 924	n:2400000
TECPR1   2400000 perm   2630 sec   (912 perm/sec)   p_kst 3.850000e-04   p_cons 8.828792e-01   p_joint 3.850000e-04

Joint ci ratio: 1.286555e-01	ci left: 3.602858e-04	ci right 4.102221e-04	k: 927	n:2410000
Cons ci ratio: 9.196903e-04	ci left: 8.824738e-01	ci right 8.832862e-01	k: 2127742	n:2410000
KS ci ratio: 1.286555e-01	ci left: 3.602858e-04	ci right 4.102221e-04	k: 927	n:2410000
TECPR1   2410000 perm   2650 sec   (909 perm/sec)   p_kst 3.846473e-04   p_cons 8.828805e-01   p_joint 3.846473e-04

Joint ci ratio: 1.284481e-01	ci left: 3.599968e-04	ci right 4.098065e-04	k: 930	n:2420000
Cons ci ratio: 9.177162e-04	ci left: 8.824909e-01	ci right 8.833016e-01	k: 2136610	n:2420000
KS ci ratio: 1.284481e-01	ci left: 3.599968e-04	ci right 4.098065e-04	k: 930	n:2420000
TECPR1   2420000 perm   2670 sec   (906 perm/sec)   p_kst 3.842975e-04   p_cons 8.828967e-01   p_joint 3.842975e-04

Joint ci ratio: 1.281730e-01	ci left: 3.601086e-04	ci right 4.098190e-04	k: 934	n:2430000
Cons ci ratio: 9.158441e-04	ci left: 8.824876e-01	ci right 8.832966e-01	k: 2145429	n:2430000
KS ci ratio: 1.281730e-01	ci left: 3.601086e-04	ci right 4.098190e-04	k: 934	n:2430000
TECPR1   2430000 perm   2690 sec   (903 perm/sec)   p_kst 3.843621e-04   p_cons 8.828926e-01   p_joint 3.843621e-04

Joint ci ratio: 1.278997e-01	ci left: 3.602196e-04	ci right 4.098312e-04	k: 938	n:2440000
Cons ci ratio: 9.139545e-04	ci left: 8.824910e-01	ci right 8.832983e-01	k: 2154264	n:2440000
KS ci ratio: 1.278997e-01	ci left: 3.602196e-04	ci right 4.098312e-04	k: 938	n:2440000
TECPR1   2440000 perm   2710 sec   (900 perm/sec)   p_kst 3.844262e-04   p_cons 8.828951e-01   p_joint 3.844262e-04

Joint ci ratio: 1.277638e-01	ci left: 3.595395e-04	ci right 4.090009e-04	k: 940	n:2450000
Cons ci ratio: 9.120927e-04	ci left: 8.824906e-01	ci right 8.832963e-01	k: 2163090	n:2450000
KS ci ratio: 1.277638e-01	ci left: 3.595395e-04	ci right 4.090009e-04	k: 940	n:2450000
TECPR1   2450000 perm   2731 sec   (897 perm/sec)   p_kst 3.836735e-04   p_cons 8.828939e-01   p_joint 3.836735e-04

Joint ci ratio: 1.275606e-01	ci left: 3.592585e-04	ci right 4.085967e-04	k: 943	n:2460000
Cons ci ratio: 9.101599e-04	ci left: 8.825089e-01	ci right 8.833129e-01	k: 2171962	n:2460000
KS ci ratio: 1.275606e-01	ci left: 3.592585e-04	ci right 4.085967e-04	k: 943	n:2460000
TECPR1   2460000 perm   2751 sec   (894 perm/sec)   p_kst 3.833333e-04   p_cons 8.829114e-01   p_joint 3.833333e-04

Joint ci ratio: 1.268901e-01	ci left: 3.617238e-04	ci right 4.111198e-04	k: 953	n:2470000
Cons ci ratio: 9.082766e-04	ci left: 8.825186e-01	ci right 8.833210e-01	k: 2180813	n:2470000
KS ci ratio: 1.268901e-01	ci left: 3.617238e-04	ci right 4.111198e-04	k: 953	n:2470000
TECPR1   2470000 perm   2772 sec   (891 perm/sec)   p_kst 3.858300e-04   p_cons 8.829202e-01   p_joint 3.858300e-04

Joint ci ratio: 1.266911e-01	ci left: 3.614365e-04	ci right 4.107101e-04	k: 956	n:2480000
Cons ci ratio: 9.064652e-04	ci left: 8.825145e-01	ci right 8.833152e-01	k: 2189630	n:2480000
KS ci ratio: 1.266911e-01	ci left: 3.614365e-04	ci right 4.107101e-04	k: 956	n:2480000
TECPR1   2480000 perm   2793 sec   (888 perm/sec)   p_kst 3.854839e-04   p_cons 8.829153e-01   p_joint 3.854839e-04

Joint ci ratio: 1.263614e-01	ci left: 3.619295e-04	ci right 4.111322e-04	k: 961	n:2490000
Cons ci ratio: 9.046627e-04	ci left: 8.825108e-01	ci right 8.833100e-01	k: 2198448	n:2490000
KS ci ratio: 1.263614e-01	ci left: 3.619295e-04	ci right 4.111322e-04	k: 961	n:2490000
TECPR1   2490000 perm   2813 sec   (885 perm/sec)   p_kst 3.859438e-04   p_cons 8.829108e-01   p_joint 3.859438e-04

Joint ci ratio: 1.260995e-01	ci left: 3.620312e-04	ci right 4.111381e-04	k: 965	n:2500000
Cons ci ratio: 9.029286e-04	ci left: 8.824940e-01	ci right 8.832915e-01	k: 2207233	n:2500000
KS ci ratio: 1.260995e-01	ci left: 3.620312e-04	ci right 4.111381e-04	k: 965	n:2500000
TECPR1   2500000 perm   2834 sec   (882 perm/sec)   p_kst 3.860000e-04   p_cons 8.828932e-01   p_joint 3.860000e-04

Joint ci ratio: 1.257744e-01	ci left: 3.625182e-04	ci right 4.115549e-04	k: 970	n:2510000
Cons ci ratio: 9.011732e-04	ci left: 8.824844e-01	ci right 8.832804e-01	k: 2216036	n:2510000
KS ci ratio: 1.257744e-01	ci left: 3.625182e-04	ci right 4.115549e-04	k: 970	n:2510000
TECPR1   2510000 perm   2855 sec   (879 perm/sec)   p_kst 3.864542e-04   p_cons 8.828829e-01   p_joint 3.864542e-04

Joint ci ratio: 1.256451e-01	ci left: 3.618483e-04	ci right 4.107403e-04	k: 972	n:2520000
Cons ci ratio: 8.994555e-04	ci left: 8.824686e-01	ci right 8.832631e-01	k: 2224823	n:2520000
KS ci ratio: 1.256451e-01	ci left: 3.618483e-04	ci right 4.107403e-04	k: 972	n:2520000
TECPR1   2520000 perm   2876 sec   (876 perm/sec)   p_kst 3.857143e-04   p_cons 8.828663e-01   p_joint 3.857143e-04

Joint ci ratio: 1.252595e-01	ci left: 3.627152e-04	ci right 4.115628e-04	k: 978	n:2530000
Cons ci ratio: 8.976139e-04	ci left: 8.824838e-01	ci right 8.832766e-01	k: 2233688	n:2530000
KS ci ratio: 1.252595e-01	ci left: 3.627152e-04	ci right 4.115628e-04	k: 978	n:2530000
TECPR1   2530000 perm   2897 sec   (873 perm/sec)   p_kst 3.865613e-04   p_cons 8.828806e-01   p_joint 3.865613e-04

Joint ci ratio: 1.249408e-01	ci left: 3.631941e-04	ci right 4.119725e-04	k: 983	n:2540000
Cons ci ratio: 8.958772e-04	ci left: 8.824771e-01	ci right 8.832685e-01	k: 2242498	n:2540000
KS ci ratio: 1.249408e-01	ci left: 3.631941e-04	ci right 4.119725e-04	k: 983	n:2540000
TECPR1   2540000 perm   2917 sec   (871 perm/sec)   p_kst 3.870079e-04   p_cons 8.828732e-01   p_joint 3.870079e-04

Joint ci ratio: 1.248141e-01	ci left: 3.625296e-04	ci right 4.111658e-04	k: 985	n:2550000
Cons ci ratio: 8.940811e-04	ci left: 8.824867e-01	ci right 8.832764e-01	k: 2251349	n:2550000
KS ci ratio: 1.248141e-01	ci left: 3.625296e-04	ci right 4.111658e-04	k: 985	n:2550000
TECPR1   2550000 perm   2937 sec   (868 perm/sec)   p_kst 3.862745e-04   p_cons 8.828820e-01   p_joint 3.862745e-04

Joint ci ratio: 1.247509e-01	ci left: 3.614919e-04	ci right 4.099625e-04	k: 986	n:2560000
Cons ci ratio: 8.923143e-04	ci left: 8.824918e-01	ci right 8.832800e-01	k: 2260189	n:2560000
KS ci ratio: 1.247509e-01	ci left: 3.614919e-04	ci right 4.099625e-04	k: 986	n:2560000
TECPR1   2560000 perm   2958 sec   (865 perm/sec)   p_kst 3.851562e-04   p_cons 8.828863e-01   p_joint 3.851562e-04

Joint ci ratio: 1.244989e-01	ci left: 3.615932e-04	ci right 4.099722e-04	k: 990	n:2570000
Cons ci ratio: 8.905278e-04	ci left: 8.825039e-01	ci right 8.832905e-01	k: 2269047	n:2570000
KS ci ratio: 1.244989e-01	ci left: 3.615932e-04	ci right 4.099722e-04	k: 990	n:2570000
TECPR1   2570000 perm   2979 sec   (863 perm/sec)   p_kst 3.852140e-04   p_cons 8.828977e-01   p_joint 3.852140e-04

Joint ci ratio: 1.241860e-01	ci left: 3.620694e-04	ci right 4.103814e-04	k: 995	n:2580000
Cons ci ratio: 8.888402e-04	ci left: 8.824954e-01	ci right 8.832805e-01	k: 2277852	n:2580000
KS ci ratio: 1.241860e-01	ci left: 3.620694e-04	ci right 4.103814e-04	k: 995	n:2580000
TECPR1   2580000 perm   3000 sec   (860 perm/sec)   p_kst 3.856589e-04   p_cons 8.828884e-01   p_joint 3.856589e-04

Joint ci ratio: 1.241237e-01	ci left: 3.610455e-04	ci right 4.091950e-04	k: 996	n:2590000
Cons ci ratio: 8.870446e-04	ci left: 8.825144e-01	ci right 8.832979e-01	k: 2286728	n:2590000
KS ci ratio: 1.241237e-01	ci left: 3.610455e-04	ci right 4.091950e-04	k: 996	n:2590000
TECPR1   2590000 perm   3021 sec   (857 perm/sec)   p_kst 3.845560e-04   p_cons 8.829066e-01   p_joint 3.845560e-04

Joint ci ratio: 1.239374e-01	ci left: 3.607749e-04	ci right 4.088108e-04	k: 999	n:2600000
Cons ci ratio: 8.852894e-04	ci left: 8.825263e-01	ci right 8.833083e-01	k: 2295586	n:2600000
KS ci ratio: 1.239374e-01	ci left: 3.607749e-04	ci right 4.088108e-04	k: 999	n:2600000
TECPR1   2600000 perm   3042 sec   (855 perm/sec)   p_kst 3.842308e-04   p_cons 8.829177e-01   p_joint 3.842308e-04

Joint ci ratio: 1.236287e-01	ci left: 3.612491e-04	ci right 4.092195e-04	k: 1004	n:2610000
Cons ci ratio: 8.836495e-04	ci left: 8.825135e-01	ci right 8.832941e-01	k: 2304380	n:2610000
KS ci ratio: 1.236287e-01	ci left: 3.612491e-04	ci right 4.092195e-04	k: 1004	n:2610000
TECPR1   2610000 perm   3064 sec   (852 perm/sec)   p_kst 3.846743e-04   p_cons 8.829042e-01   p_joint 3.846743e-04

Joint ci ratio: 1.235673e-01	ci left: 3.602401e-04	ci right 4.080510e-04	k: 1005	n:2620000
Cons ci ratio: 8.819323e-04	ci left: 8.825211e-01	ci right 8.833002e-01	k: 2313227	n:2620000
KS ci ratio: 1.235673e-01	ci left: 3.602401e-04	ci right 4.080510e-04	k: 1005	n:2620000
TECPR1   2620000 perm   3086 sec   (849 perm/sec)   p_kst 3.835878e-04   p_cons 8.829111e-01   p_joint 3.835878e-04

Joint ci ratio: 1.232613e-01	ci left: 3.607128e-04	ci right 4.084593e-04	k: 1010	n:2630000
Cons ci ratio: 8.802444e-04	ci left: 8.825241e-01	ci right 8.833017e-01	k: 2322062	n:2630000
KS ci ratio: 1.232613e-01	ci left: 3.607128e-04	ci right 4.084593e-04	k: 1010	n:2630000
TECPR1   2630000 perm   3108 sec   (846 perm/sec)   p_kst 3.840304e-04   p_cons 8.829133e-01   p_joint 3.840304e-04

Joint ci ratio: 1.229576e-01	ci left: 3.611821e-04	ci right 4.088644e-04	k: 1015	n:2640000
Cons ci ratio: 8.785067e-04	ci left: 8.825411e-01	ci right 8.833171e-01	k: 2330934	n:2640000
KS ci ratio: 1.229576e-01	ci left: 3.611821e-04	ci right 4.088644e-04	k: 1015	n:2640000
TECPR1   2640000 perm   3129 sec   (844 perm/sec)   p_kst 3.844697e-04   p_cons 8.829295e-01   p_joint 3.844697e-04

Joint ci ratio: 1.228368e-01	ci left: 3.605507e-04	ci right 4.080994e-04	k: 1017	n:2650000
Cons ci ratio: 8.768801e-04	ci left: 8.825342e-01	ci right 8.833088e-01	k: 2339743	n:2650000
KS ci ratio: 1.228368e-01	ci left: 3.605507e-04	ci right 4.080994e-04	k: 1017	n:2650000
TECPR1   2650000 perm   3151 sec   (841 perm/sec)   p_kst 3.837736e-04   p_cons 8.829219e-01   p_joint 3.837736e-04

Joint ci ratio: 1.227164e-01	ci left: 3.599240e-04	ci right 4.073401e-04	k: 1019	n:2660000
Cons ci ratio: 8.751733e-04	ci left: 8.825484e-01	ci right 8.833215e-01	k: 2348608	n:2660000
KS ci ratio: 1.227164e-01	ci left: 3.599240e-04	ci right 4.073401e-04	k: 1019	n:2660000
TECPR1   2660000 perm   3173 sec   (838 perm/sec)   p_kst 3.830827e-04   p_cons 8.829353e-01   p_joint 3.830827e-04

Joint ci ratio: 1.222974e-01	ci left: 3.611174e-04	ci right 4.085165e-04	k: 1026	n:2670000
Cons ci ratio: 8.734860e-04	ci left: 8.825602e-01	ci right 8.833318e-01	k: 2357467	n:2670000
KS ci ratio: 1.222974e-01	ci left: 3.611174e-04	ci right 4.085165e-04	k: 1026	n:2670000
TECPR1   2670000 perm   3195 sec   (836 perm/sec)   p_kst 3.842697e-04   p_cons 8.829464e-01   p_joint 3.842697e-04

Joint ci ratio: 1.221192e-01	ci left: 3.608551e-04	ci right 4.081458e-04	k: 1029	n:2680000
Cons ci ratio: 8.717753e-04	ci left: 8.825798e-01	ci right 8.833499e-01	k: 2366347	n:2680000
KS ci ratio: 1.221192e-01	ci left: 3.608551e-04	ci right 4.081458e-04	k: 1029	n:2680000
TECPR1   2680000 perm   3217 sec   (833 perm/sec)   p_kst 3.839552e-04   p_cons 8.829653e-01   p_joint 3.839552e-04

Joint ci ratio: 1.218827e-01	ci left: 3.609552e-04	ci right 4.081609e-04	k: 1033	n:2690000
Cons ci ratio: 8.701778e-04	ci left: 8.825747e-01	ci right 8.833434e-01	k: 2375161	n:2690000
KS ci ratio: 1.218827e-01	ci left: 3.609552e-04	ci right 4.081609e-04	k: 1033	n:2690000
TECPR1   2690000 perm   3239 sec   (830 perm/sec)   p_kst 3.840149e-04   p_cons 8.829595e-01   p_joint 3.840149e-04

Joint ci ratio: 1.217063e-01	ci left: 3.606956e-04	ci right 4.077941e-04	k: 1036	n:2700000
Cons ci ratio: 8.685051e-04	ci left: 8.825897e-01	ci right 8.833569e-01	k: 2384029	n:2700000
KS ci ratio: 1.217063e-01	ci left: 3.606956e-04	ci right 4.077941e-04	k: 1036	n:2700000
TECPR1   2700000 perm   3261 sec   (828 perm/sec)   p_kst 3.837037e-04   p_cons 8.829737e-01   p_joint 3.837037e-04

Joint ci ratio: 1.212395e-01	ci left: 3.622270e-04	ci right 4.093310e-04	k: 1044	n:2710000
Cons ci ratio: 8.669596e-04	ci left: 8.825764e-01	ci right 8.833423e-01	k: 2392821	n:2710000
KS ci ratio: 1.212395e-01	ci left: 3.622270e-04	ci right 4.093310e-04	k: 1044	n:2710000
TECPR1   2710000 perm   3284 sec   (825 perm/sec)   p_kst 3.852399e-04   p_cons 8.829598e-01   p_joint 3.852399e-04

Joint ci ratio: 1.209505e-01	ci left: 3.626778e-04	ci right 4.097200e-04	k: 1049	n:2720000
Cons ci ratio: 8.652700e-04	ci left: 8.825998e-01	ci right 8.833641e-01	k: 2401712	n:2720000
KS ci ratio: 1.209505e-01	ci left: 3.626778e-04	ci right 4.097200e-04	k: 1049	n:2720000
TECPR1   2720000 perm   3306 sec   (823 perm/sec)   p_kst 3.856618e-04   p_cons 8.829824e-01   p_joint 3.856618e-04

Joint ci ratio: 1.206063e-01	ci left: 3.634808e-04	ci right 4.104834e-04	k: 1055	n:2730000
Cons ci ratio: 8.637830e-04	ci left: 8.825767e-01	ci right 8.833397e-01	k: 2410477	n:2730000
KS ci ratio: 1.206063e-01	ci left: 3.634808e-04	ci right 4.104834e-04	k: 1055	n:2730000
TECPR1   2730000 perm   3328 sec   (820 perm/sec)   p_kst 3.864469e-04   p_cons 8.829586e-01   p_joint 3.864469e-04

Joint ci ratio: 1.203785e-01	ci left: 3.635700e-04	ci right 4.104891e-04	k: 1059	n:2740000
Cons ci ratio: 8.622336e-04	ci left: 8.825706e-01	ci right 8.833323e-01	k: 2419288	n:2740000
KS ci ratio: 1.203785e-01	ci left: 3.635700e-04	ci right 4.104891e-04	k: 1059	n:2740000
TECPR1   2740000 perm   3351 sec   (818 perm/sec)   p_kst 3.864964e-04   p_cons 8.829518e-01   p_joint 3.864964e-04

Joint ci ratio: 1.201520e-01	ci left: 3.636588e-04	ci right 4.104947e-04	k: 1063	n:2750000
Cons ci ratio: 8.606623e-04	ci left: 8.825718e-01	ci right 8.833321e-01	k: 2428119	n:2750000
KS ci ratio: 1.201520e-01	ci left: 3.636588e-04	ci right 4.104947e-04	k: 1063	n:2750000
TECPR1   2750000 perm   3373 sec   (815 perm/sec)   p_kst 3.865455e-04   p_cons 8.829524e-01   p_joint 3.865455e-04

Joint ci ratio: 1.199830e-01	ci left: 3.633955e-04	ci right 4.101270e-04	k: 1066	n:2760000
Cons ci ratio: 8.590769e-04	ci left: 8.825785e-01	ci right 8.833374e-01	k: 2436965	n:2760000
KS ci ratio: 1.199830e-01	ci left: 3.633955e-04	ci right 4.101270e-04	k: 1066	n:2760000
TECPR1   2760000 perm   3396 sec   (813 perm/sec)   p_kst 3.862319e-04   p_cons 8.829583e-01   p_joint 3.862319e-04

Joint ci ratio: 1.198147e-01	ci left: 3.631341e-04	ci right 4.097619e-04	k: 1069	n:2770000
Cons ci ratio: 8.575930e-04	ci left: 8.825627e-01	ci right 8.833203e-01	k: 2445749	n:2770000
KS ci ratio: 1.198147e-01	ci left: 3.631341e-04	ci right 4.097619e-04	k: 1069	n:2770000
TECPR1   2770000 perm   3419 sec   (810 perm/sec)   p_kst 3.859206e-04   p_cons 8.829419e-01   p_joint 3.859206e-04

Joint ci ratio: 1.196471e-01	ci left: 3.628747e-04	ci right 4.093994e-04	k: 1072	n:2780000
Cons ci ratio: 8.560320e-04	ci left: 8.825676e-01	ci right 8.833237e-01	k: 2454590	n:2780000
KS ci ratio: 1.196471e-01	ci left: 3.628747e-04	ci right 4.093994e-04	k: 1072	n:2780000
TECPR1   2780000 perm   3441 sec   (808 perm/sec)   p_kst 3.856115e-04   p_cons 8.829460e-01   p_joint 3.856115e-04

Joint ci ratio: 1.193140e-01	ci left: 3.636603e-04	ci right 4.101467e-04	k: 1078	n:2790000
Cons ci ratio: 8.545060e-04	ci left: 8.825659e-01	ci right 8.833207e-01	k: 2463413	n:2790000
KS ci ratio: 1.193140e-01	ci left: 3.636603e-04	ci right 4.101467e-04	k: 1078	n:2790000
TECPR1   2790000 perm   3464 sec   (805 perm/sec)   p_kst 3.863799e-04   p_cons 8.829437e-01   p_joint 3.863799e-04

Joint ci ratio: 1.192036e-01	ci left: 3.630545e-04	ci right 4.094175e-04	k: 1080	n:2800000
Cons ci ratio: 8.529691e-04	ci left: 8.825689e-01	ci right 8.833224e-01	k: 2472249	n:2800000
KS ci ratio: 1.192036e-01	ci left: 3.630545e-04	ci right 4.094175e-04	k: 1080	n:2800000
TECPR1   2800000 perm   3487 sec   (803 perm/sec)   p_kst 3.857143e-04   p_cons 8.829461e-01   p_joint 3.857143e-04

Joint ci ratio: 1.190385e-01	ci left: 3.627983e-04	ci right 4.090599e-04	k: 1083	n:2810000
Cons ci ratio: 8.514947e-04	ci left: 8.825588e-01	ci right 8.833109e-01	k: 2481048	n:2810000
KS ci ratio: 1.190385e-01	ci left: 3.627983e-04	ci right 4.090599e-04	k: 1083	n:2810000
TECPR1   2810000 perm   3510 sec   (801 perm/sec)   p_kst 3.854093e-04   p_cons 8.829352e-01   p_joint 3.854093e-04

Joint ci ratio: 1.188195e-01	ci left: 3.628880e-04	ci right 4.090700e-04	k: 1087	n:2820000
Cons ci ratio: 8.500235e-04	ci left: 8.825497e-01	ci right 8.833006e-01	k: 2489850	n:2820000
KS ci ratio: 1.188195e-01	ci left: 3.628880e-04	ci right 4.090700e-04	k: 1087	n:2820000
TECPR1   2820000 perm   3532 sec   (798 perm/sec)   p_kst 3.854610e-04   p_cons 8.829255e-01   p_joint 3.854610e-04

Joint ci ratio: 1.185474e-01	ci left: 3.633201e-04	ci right 4.094437e-04	k: 1092	n:2830000
Cons ci ratio: 8.484598e-04	ci left: 8.825652e-01	ci right 8.833146e-01	k: 2498721	n:2830000
KS ci ratio: 1.185474e-01	ci left: 3.633201e-04	ci right 4.094437e-04	k: 1092	n:2830000
TECPR1   2830000 perm   3555 sec   (796 perm/sec)   p_kst 3.858657e-04   p_cons 8.829403e-01   p_joint 3.858657e-04

Joint ci ratio: 1.182771e-01	ci left: 3.637492e-04	ci right 4.098147e-04	k: 1097	n:2840000
Cons ci ratio: 8.469552e-04	ci left: 8.825681e-01	ci right 8.833163e-01	k: 2507557	n:2840000
KS ci ratio: 1.182771e-01	ci left: 3.637492e-04	ci right 4.098147e-04	k: 1097	n:2840000
TECPR1   2840000 perm   3578 sec   (794 perm/sec)   p_kst 3.862676e-04   p_cons 8.829426e-01   p_joint 3.862676e-04

Joint ci ratio: 1.180087e-01	ci left: 3.641755e-04	ci right 4.101829e-04	k: 1102	n:2850000
Cons ci ratio: 8.452992e-04	ci left: 8.826101e-01	ci right 8.833568e-01	k: 2516504	n:2850000
KS ci ratio: 1.180087e-01	ci left: 3.641755e-04	ci right 4.101829e-04	k: 1102	n:2850000
TECPR1   2850000 perm   3601 sec   (791 perm/sec)   p_kst 3.866667e-04   p_cons 8.829839e-01   p_joint 3.866667e-04

Joint ci ratio: 1.176890e-01	ci left: 3.649382e-04	ci right 4.109084e-04	k: 1108	n:2860000
Cons ci ratio: 8.437771e-04	ci left: 8.826213e-01	ci right 8.833667e-01	k: 2525364	n:2860000
KS ci ratio: 1.176890e-01	ci left: 3.649382e-04	ci right 4.109084e-04	k: 1108	n:2860000
TECPR1   2860000 perm   3624 sec   (789 perm/sec)   p_kst 3.874126e-04   p_cons 8.829944e-01   p_joint 3.874126e-04

Joint ci ratio: 1.175302e-01	ci left: 3.646812e-04	ci right 4.105527e-04	k: 1111	n:2870000
Cons ci ratio: 8.422986e-04	ci left: 8.826237e-01	ci right 8.833678e-01	k: 2534199	n:2870000
KS ci ratio: 1.175302e-01	ci left: 3.646812e-04	ci right 4.105527e-04	k: 1111	n:2870000
TECPR1   2870000 perm   3647 sec   (787 perm/sec)   p_kst 3.871080e-04   p_cons 8.829962e-01   p_joint 3.871080e-04

Joint ci ratio: 1.171096e-01	ci left: 3.661112e-04	ci right 4.119865e-04	k: 1119	n:2880000
Cons ci ratio: 8.408053e-04	ci left: 8.826317e-01	ci right 8.833745e-01	k: 2543050	n:2880000
KS ci ratio: 1.171096e-01	ci left: 3.661112e-04	ci right 4.119865e-04	k: 1119	n:2880000
TECPR1   2880000 perm   3670 sec   (785 perm/sec)   p_kst 3.885417e-04   p_cons 8.830035e-01   p_joint 3.885417e-04

Joint ci ratio: 1.167971e-01	ci left: 3.668598e-04	ci right 4.126977e-04	k: 1125	n:2890000
Cons ci ratio: 8.393255e-04	ci left: 8.826382e-01	ci right 8.833797e-01	k: 2551897	n:2890000
KS ci ratio: 1.167971e-01	ci left: 3.668598e-04	ci right 4.126977e-04	k: 1125	n:2890000
TECPR1   2890000 perm   3693 sec   (782 perm/sec)   p_kst 3.892734e-04   p_cons 8.830093e-01   p_joint 3.892734e-04

Joint ci ratio: 1.166936e-01	ci left: 3.662642e-04	ci right 4.119844e-04	k: 1127	n:2900000
Cons ci ratio: 8.379542e-04	ci left: 8.826198e-01	ci right 8.833601e-01	k: 2560672	n:2900000
KS ci ratio: 1.166936e-01	ci left: 3.662642e-04	ci right 4.119844e-04	k: 1127	n:2900000
TECPR1   2900000 perm   3717 sec   (780 perm/sec)   p_kst 3.886207e-04   p_cons 8.829903e-01   p_joint 3.886207e-04

Joint ci ratio: 1.164872e-01	ci left: 3.663401e-04	ci right 4.119833e-04	k: 1131	n:2910000
Cons ci ratio: 8.364657e-04	ci left: 8.826322e-01	ci right 8.833711e-01	k: 2569536	n:2910000
KS ci ratio: 1.164872e-01	ci left: 3.663401e-04	ci right 4.119833e-04	k: 1131	n:2910000
TECPR1   2910000 perm   3741 sec   (778 perm/sec)   p_kst 3.886598e-04   p_cons 8.830021e-01   p_joint 3.886598e-04

Joint ci ratio: 1.162820e-01	ci left: 3.664155e-04	ci right 4.119821e-04	k: 1135	n:2920000
Cons ci ratio: 8.349935e-04	ci left: 8.826424e-01	ci right 8.833801e-01	k: 2578394	n:2920000
KS ci ratio: 1.162820e-01	ci left: 3.664155e-04	ci right 4.119821e-04	k: 1135	n:2920000
TECPR1   2920000 perm   3764 sec   (776 perm/sec)   p_kst 3.886986e-04   p_cons 8.830116e-01   p_joint 3.886986e-04

Joint ci ratio: 1.159760e-01	ci left: 3.671532e-04	ci right 4.126833e-04	k: 1141	n:2930000
Cons ci ratio: 8.336116e-04	ci left: 8.826321e-01	ci right 8.833685e-01	k: 2587192	n:2930000
KS ci ratio: 1.159760e-01	ci left: 3.671532e-04	ci right 4.126833e-04	k: 1141	n:2930000
TECPR1   2930000 perm   3787 sec   (774 perm/sec)   p_kst 3.894198e-04   p_cons 8.830007e-01   p_joint 3.894198e-04

Joint ci ratio: 1.157230e-01	ci left: 3.675558e-04	ci right 4.130295e-04	k: 1146	n:2940000
Cons ci ratio: 8.322118e-04	ci left: 8.826280e-01	ci right 8.833631e-01	k: 2596008	n:2940000
KS ci ratio: 1.157230e-01	ci left: 3.675558e-04	ci right 4.130295e-04	k: 1146	n:2940000
TECPR1   2940000 perm   3811 sec   (771 perm/sec)   p_kst 3.897959e-04   p_cons 8.829959e-01   p_joint 3.897959e-04

Joint ci ratio: 1.155719e-01	ci left: 3.672974e-04	ci right 4.126758e-04	k: 1149	n:2950000
Cons ci ratio: 8.308546e-04	ci left: 8.826150e-01	ci right 8.833490e-01	k: 2604798	n:2950000
KS ci ratio: 1.155719e-01	ci left: 3.672974e-04	ci right 4.126758e-04	k: 1149	n:2950000
TECPR1   2950000 perm   3835 sec   (769 perm/sec)   p_kst 3.894915e-04   p_cons 8.829824e-01   p_joint 3.894915e-04

Joint ci ratio: 1.154215e-01	ci left: 3.670408e-04	ci right 4.123244e-04	k: 1152	n:2960000
Cons ci ratio: 8.294619e-04	ci left: 8.826127e-01	ci right 8.833454e-01	k: 2613619	n:2960000
KS ci ratio: 1.154215e-01	ci left: 3.670408e-04	ci right 4.123244e-04	k: 1152	n:2960000
TECPR1   2960000 perm   3859 sec   (767 perm/sec)   p_kst 3.891892e-04   p_cons 8.829794e-01   p_joint 3.891892e-04

Joint ci ratio: 1.151223e-01	ci left: 3.677669e-04	ci right 4.130145e-04	k: 1158	n:2970000
Cons ci ratio: 8.279966e-04	ci left: 8.826302e-01	ci right 8.833616e-01	k: 2622499	n:2970000
KS ci ratio: 1.151223e-01	ci left: 3.677669e-04	ci right 4.130145e-04	k: 1158	n:2970000
TECPR1   2970000 perm   3884 sec   (765 perm/sec)   p_kst 3.898990e-04   p_cons 8.829963e-01   p_joint 3.898990e-04

Joint ci ratio: 1.149736e-01	ci left: 3.675105e-04	ci right 4.126642e-04	k: 1161	n:2980000
Cons ci ratio: 8.265806e-04	ci left: 8.826372e-01	ci right 8.833674e-01	k: 2631348	n:2980000
KS ci ratio: 1.149736e-01	ci left: 3.675105e-04	ci right 4.126642e-04	k: 1161	n:2980000
TECPR1   2980000 perm   3908 sec   (763 perm/sec)   p_kst 3.895973e-04   p_cons 8.830027e-01   p_joint 3.895973e-04

Joint ci ratio: 1.147270e-01	ci left: 3.679056e-04	ci right 4.130043e-04	k: 1166	n:2990000
Cons ci ratio: 8.252413e-04	ci left: 8.826268e-01	ci right 8.833558e-01	k: 2640145	n:2990000
KS ci ratio: 1.147270e-01	ci left: 3.679056e-04	ci right 4.130043e-04	k: 1166	n:2990000
TECPR1   2990000 perm   3932 sec   (760 perm/sec)   p_kst 3.899666e-04   p_cons 8.829916e-01   p_joint 3.899666e-04

Joint ci ratio: 1.146780e-01	ci left: 3.670030e-04	ci right 4.119705e-04	k: 1167	n:3000000
Cons ci ratio: 8.239098e-04	ci left: 8.826161e-01	ci right 8.833439e-01	k: 2648941	n:3000000
KS ci ratio: 1.146780e-01	ci left: 3.670030e-04	ci right 4.119705e-04	k: 1167	n:3000000
TECPR1   3000000 perm   3956 sec   (758 perm/sec)   p_kst 3.890000e-04   p_cons 8.829803e-01   p_joint 3.890000e-04

Joint ci ratio: 1.145310e-01	ci left: 3.667518e-04	ci right 4.116271e-04	k: 1170	n:3010000
Cons ci ratio: 8.225358e-04	ci left: 8.826177e-01	ci right 8.833443e-01	k: 2657774	n:3010000
KS ci ratio: 1.145310e-01	ci left: 3.667518e-04	ci right 4.116271e-04	k: 1170	n:3010000
TECPR1   3010000 perm   3980 sec   (756 perm/sec)   p_kst 3.887043e-04   p_cons 8.829814e-01   p_joint 3.887043e-04

Joint ci ratio: 1.143846e-01	ci left: 3.665023e-04	ci right 4.112859e-04	k: 1173	n:3020000
Cons ci ratio: 8.211134e-04	ci left: 8.826333e-01	ci right 8.833587e-01	k: 2666649	n:3020000
KS ci ratio: 1.143846e-01	ci left: 3.665023e-04	ci right 4.112859e-04	k: 1173	n:3020000
TECPR1   3020000 perm   4004 sec   (754 perm/sec)   p_kst 3.884106e-04   p_cons 8.829964e-01   p_joint 3.884106e-04

Joint ci ratio: 1.140934e-01	ci left: 3.672164e-04	ci right 4.119653e-04	k: 1179	n:3030000
Cons ci ratio: 8.198083e-04	ci left: 8.826210e-01	ci right 8.833452e-01	k: 2675440	n:3030000
KS ci ratio: 1.140934e-01	ci left: 3.672164e-04	ci right 4.119653e-04	k: 1179	n:3030000
TECPR1   3030000 perm   4028 sec   (752 perm/sec)   p_kst 3.891089e-04   p_cons 8.829835e-01   p_joint 3.891089e-04

Joint ci ratio: 1.139005e-01	ci left: 3.672867e-04	ci right 4.119634e-04	k: 1183	n:3040000
Cons ci ratio: 8.184808e-04	ci left: 8.826161e-01	ci right 8.833391e-01	k: 2684253	n:3040000
KS ci ratio: 1.139005e-01	ci left: 3.672867e-04	ci right 4.119634e-04	k: 1183	n:3040000
TECPR1   3040000 perm   4052 sec   (750 perm/sec)   p_kst 3.891447e-04   p_cons 8.829780e-01   p_joint 3.891447e-04

Joint ci ratio: 1.138525e-01	ci left: 3.664010e-04	ci right 4.109499e-04	k: 1184	n:3050000
Cons ci ratio: 8.172115e-04	ci left: 8.825980e-01	ci right 8.833199e-01	k: 2693026	n:3050000
KS ci ratio: 1.138525e-01	ci left: 3.664010e-04	ci right 4.109499e-04	k: 1184	n:3050000
TECPR1   3050000 perm   4077 sec   (748 perm/sec)   p_kst 3.881967e-04   p_cons 8.829593e-01   p_joint 3.881967e-04

Joint ci ratio: 1.136130e-01	ci left: 3.667911e-04	ci right 4.112874e-04	k: 1189	n:3060000
Cons ci ratio: 8.158862e-04	ci left: 8.825958e-01	ci right 8.833165e-01	k: 2701847	n:3060000
KS ci ratio: 1.136130e-01	ci left: 3.667911e-04	ci right 4.112874e-04	k: 1189	n:3060000
TECPR1   3060000 perm   4101 sec   (746 perm/sec)   p_kst 3.885621e-04   p_cons 8.829565e-01   p_joint 3.885621e-04

Joint ci ratio: 1.134701e-01	ci left: 3.665458e-04	ci right 4.109526e-04	k: 1192	n:3070000
Cons ci ratio: 8.144928e-04	ci left: 8.826125e-01	ci right 8.833320e-01	k: 2710726	n:3070000
KS ci ratio: 1.134701e-01	ci left: 3.665458e-04	ci right 4.109526e-04	k: 1192	n:3070000
TECPR1   3070000 perm   4125 sec   (744 perm/sec)   p_kst 3.882736e-04   p_cons 8.829726e-01   p_joint 3.882736e-04

Joint ci ratio: 1.131858e-01	ci left: 3.672486e-04	ci right 4.116216e-04	k: 1198	n:3080000
Cons ci ratio: 8.132062e-04	ci left: 8.826038e-01	ci right 8.833221e-01	k: 2719527	n:3080000
KS ci ratio: 1.131858e-01	ci left: 3.672486e-04	ci right 4.116216e-04	k: 1198	n:3080000
TECPR1   3080000 perm   4150 sec   (742 perm/sec)   p_kst 3.889610e-04   p_cons 8.829633e-01   p_joint 3.889610e-04

Joint ci ratio: 1.130915e-01	ci left: 3.666890e-04	ci right 4.109551e-04	k: 1200	n:3090000
Cons ci ratio: 8.118685e-04	ci left: 8.826097e-01	ci right 8.833268e-01	k: 2728373	n:3090000
KS ci ratio: 1.130915e-01	ci left: 3.666890e-04	ci right 4.109551e-04	k: 1200	n:3090000
TECPR1   3090000 perm   4174 sec   (740 perm/sec)   p_kst 3.883495e-04   p_cons 8.829686e-01   p_joint 3.883495e-04

Joint ci ratio: 1.129037e-01	ci left: 3.667600e-04	ci right 4.109562e-04	k: 1204	n:3100000
Cons ci ratio: 8.105690e-04	ci left: 8.826074e-01	ci right 8.833235e-01	k: 2737194	n:3100000
KS ci ratio: 1.129037e-01	ci left: 3.667600e-04	ci right 4.109562e-04	k: 1204	n:3100000
TECPR1   3100000 perm   4199 sec   (738 perm/sec)   p_kst 3.883871e-04   p_cons 8.829658e-01   p_joint 3.883871e-04

Joint ci ratio: 1.127634e-01	ci left: 3.665181e-04	ci right 4.106266e-04	k: 1207	n:3110000
Cons ci ratio: 8.092391e-04	ci left: 8.826146e-01	ci right 8.833294e-01	k: 2746044	n:3110000
KS ci ratio: 1.127634e-01	ci left: 3.665181e-04	ci right 4.106266e-04	k: 1207	n:3110000
TECPR1   3110000 perm   4224 sec   (736 perm/sec)   p_kst 3.881029e-04   p_cons 8.829723e-01   p_joint 3.881029e-04

Joint ci ratio: 1.126702e-01	ci left: 3.659663e-04	ci right 4.099696e-04	k: 1209	n:3120000
Cons ci ratio: 8.079371e-04	ci left: 8.826162e-01	ci right 8.833299e-01	k: 2754877	n:3120000
KS ci ratio: 1.126702e-01	ci left: 3.659663e-04	ci right 4.099696e-04	k: 1209	n:3120000
TECPR1   3120000 perm   4249 sec   (734 perm/sec)   p_kst 3.875000e-04   p_cons 8.829734e-01   p_joint 3.875000e-04

Joint ci ratio: 1.126237e-01	ci left: 3.651076e-04	ci right 4.089883e-04	k: 1210	n:3130000
Cons ci ratio: 8.066414e-04	ci left: 8.826178e-01	ci right 8.833304e-01	k: 2763710	n:3130000
KS ci ratio: 1.126237e-01	ci left: 3.651076e-04	ci right 4.089883e-04	k: 1210	n:3130000
TECPR1   3130000 perm   4274 sec   (732 perm/sec)   p_kst 3.865815e-04   p_cons 8.829744e-01   p_joint 3.865815e-04

Joint ci ratio: 1.124845e-01	ci left: 3.648733e-04	ci right 4.086681e-04	k: 1213	n:3140000
Cons ci ratio: 8.053767e-04	ci left: 8.826130e-01	ci right 8.833245e-01	k: 2772523	n:3140000
KS ci ratio: 1.124845e-01	ci left: 3.648733e-04	ci right 4.086681e-04	k: 1213	n:3140000
TECPR1   3140000 perm   4299 sec   (730 perm/sec)   p_kst 3.863057e-04   p_cons 8.829691e-01   p_joint 3.863057e-04

Joint ci ratio: 1.123920e-01	ci left: 3.643320e-04	ci right 4.080235e-04	k: 1215	n:3150000
Cons ci ratio: 8.040895e-04	ci left: 8.826156e-01	ci right 8.833259e-01	k: 2781359	n:3150000
KS ci ratio: 1.123920e-01	ci left: 3.643320e-04	ci right 4.080235e-04	k: 1215	n:3150000
TECPR1   3150000 perm   4324 sec   (728 perm/sec)   p_kst 3.857143e-04   p_cons 8.829711e-01   p_joint 3.857143e-04

Joint ci ratio: 1.120698e-01	ci left: 3.653321e-04	ci right 4.090096e-04	k: 1222	n:3160000
Cons ci ratio: 8.028515e-04	ci left: 8.826071e-01	ci right 8.833163e-01	k: 2790160	n:3160000
KS ci ratio: 1.120698e-01	ci left: 3.653321e-04	ci right 4.090096e-04	k: 1222	n:3160000
TECPR1   3160000 perm   4349 sec   (727 perm/sec)   p_kst 3.867089e-04   p_cons 8.829620e-01   p_joint 3.867089e-04

Joint ci ratio: 1.120241e-01	ci left: 3.644863e-04	ci right 4.080437e-04	k: 1223	n:3170000
Cons ci ratio: 8.016118e-04	ci left: 8.826005e-01	ci right 8.833086e-01	k: 2798967	n:3170000
KS ci ratio: 1.120241e-01	ci left: 3.644863e-04	ci right 4.080437e-04	k: 1223	n:3170000
TECPR1   3170000 perm   4374 sec   (725 perm/sec)   p_kst 3.858044e-04   p_cons 8.829549e-01   p_joint 3.858044e-04

Joint ci ratio: 1.118871e-01	ci left: 3.642571e-04	ci right 4.077303e-04	k: 1226	n:3180000
Cons ci ratio: 8.003791e-04	ci left: 8.825936e-01	ci right 8.833006e-01	k: 2807773	n:3180000
KS ci ratio: 1.118871e-01	ci left: 3.642571e-04	ci right 4.077303e-04	k: 1226	n:3180000
TECPR1   3180000 perm   4399 sec   (723 perm/sec)   p_kst 3.855346e-04   p_cons 8.829475e-01   p_joint 3.855346e-04

Joint ci ratio: 1.118416e-01	ci left: 3.634199e-04	ci right 4.067745e-04	k: 1227	n:3190000
Cons ci ratio: 7.991775e-04	ci left: 8.825802e-01	ci right 8.832862e-01	k: 2816558	n:3190000
KS ci ratio: 1.118416e-01	ci left: 3.634199e-04	ci right 4.067745e-04	k: 1227	n:3190000
TECPR1   3190000 perm   4426 sec   (721 perm/sec)   p_kst 3.846395e-04   p_cons 8.829335e-01   p_joint 3.846395e-04

Joint ci ratio: 1.116145e-01	ci left: 3.638030e-04	ci right 4.071094e-04	k: 1232	n:3200000
Cons ci ratio: 7.978474e-04	ci left: 8.826016e-01	ci right 8.833064e-01	k: 2825454	n:3200000
KS ci ratio: 1.116145e-01	ci left: 3.638030e-04	ci right 4.071094e-04	k: 1232	n:3200000
TECPR1   3200000 perm   4453 sec   (719 perm/sec)   p_kst 3.850000e-04   p_cons 8.829544e-01   p_joint 3.850000e-04

Joint ci ratio: 1.112541e-01	ci left: 3.650925e-04	ci right 4.084028e-04	k: 1240	n:3210000
Cons ci ratio: 7.966295e-04	ci left: 8.825955e-01	ci right 8.832992e-01	k: 2834262	n:3210000
KS ci ratio: 1.112541e-01	ci left: 3.650925e-04	ci right 4.084028e-04	k: 1240	n:3210000
TECPR1   3210000 perm   4480 sec   (717 perm/sec)   p_kst 3.862928e-04   p_cons 8.829477e-01   p_joint 3.862928e-04

Joint ci ratio: 1.111646e-01	ci left: 3.645625e-04	ci right 4.077729e-04	k: 1242	n:3220000
Cons ci ratio: 7.954220e-04	ci left: 8.825881e-01	ci right 8.832907e-01	k: 2843066	n:3220000
KS ci ratio: 1.111646e-01	ci left: 3.645625e-04	ci right 4.077729e-04	k: 1242	n:3220000
TECPR1   3220000 perm   4506 sec   (715 perm/sec)   p_kst 3.857143e-04   p_cons 8.829398e-01   p_joint 3.857143e-04

Joint ci ratio: 1.110307e-01	ci left: 3.643368e-04	ci right 4.074650e-04	k: 1245	n:3230000
Cons ci ratio: 7.942081e-04	ci left: 8.825839e-01	ci right 8.832854e-01	k: 2851880	n:3230000
KS ci ratio: 1.110307e-01	ci left: 3.643368e-04	ci right 4.074650e-04	k: 1245	n:3230000
TECPR1   3230000 perm   4532 sec   (713 perm/sec)   p_kst 3.854489e-04   p_cons 8.829350e-01   p_joint 3.854489e-04

Joint ci ratio: 1.107201e-01	ci left: 3.653129e-04	ci right 4.084278e-04	k: 1252	n:3240000
Cons ci ratio: 7.929701e-04	ci left: 8.825874e-01	ci right 8.832878e-01	k: 2860719	n:3240000
KS ci ratio: 1.107201e-01	ci left: 3.653129e-04	ci right 4.084278e-04	k: 1252	n:3240000
TECPR1   3240000 perm   4557 sec   (711 perm/sec)   p_kst 3.864198e-04   p_cons 8.829380e-01   p_joint 3.864198e-04

Joint ci ratio: 1.105878e-01	ci left: 3.650863e-04	ci right 4.081197e-04	k: 1255	n:3250000
Cons ci ratio: 7.917897e-04	ci left: 8.825773e-01	ci right 8.832767e-01	k: 2869514	n:3250000
KS ci ratio: 1.105878e-01	ci left: 3.650863e-04	ci right 4.081197e-04	k: 1255	n:3250000
TECPR1   3250000 perm   4584 sec   (709 perm/sec)   p_kst 3.861538e-04   p_cons 8.829274e-01   p_joint 3.861538e-04

Joint ci ratio: 1.101936e-01	ci left: 3.666510e-04	ci right 4.097047e-04	k: 1264	n:3260000
Cons ci ratio: 7.905782e-04	ci left: 8.825769e-01	ci right 8.832752e-01	k: 2878340	n:3260000
KS ci ratio: 1.101936e-01	ci left: 3.666510e-04	ci right 4.097047e-04	k: 1264	n:3260000
TECPR1   3260000 perm   4610 sec   (707 perm/sec)   p_kst 3.877301e-04   p_cons 8.829264e-01   p_joint 3.877301e-04

Joint ci ratio: 1.099332e-01	ci left: 3.673141e-04	ci right 4.103371e-04	k: 1270	n:3270000
Cons ci ratio: 7.893652e-04	ci left: 8.825783e-01	ci right 8.832755e-01	k: 2887172	n:3270000
KS ci ratio: 1.099332e-01	ci left: 3.673141e-04	ci right 4.103371e-04	k: 1270	n:3270000
TECPR1   3270000 perm   4636 sec   (705 perm/sec)   p_kst 3.883792e-04   p_cons 8.829272e-01   p_joint 3.883792e-04

Joint ci ratio: 1.098468e-01	ci left: 3.667872e-04	ci right 4.097126e-04	k: 1272	n:3280000
Cons ci ratio: 7.881276e-04	ci left: 8.825876e-01	ci right 8.832837e-01	k: 2896030	n:3280000
KS ci ratio: 1.098468e-01	ci left: 3.667872e-04	ci right 4.097126e-04	k: 1272	n:3280000
TECPR1   3280000 perm   4663 sec   (703 perm/sec)   p_kst 3.878049e-04   p_cons 8.829360e-01   p_joint 3.878049e-04

Joint ci ratio: 1.097176e-01	ci left: 3.665592e-04	ci right 4.094042e-04	k: 1275	n:3290000
Cons ci ratio: 7.869641e-04	ci left: 8.825788e-01	ci right 8.832740e-01	k: 2904829	n:3290000
KS ci ratio: 1.097176e-01	ci left: 3.665592e-04	ci right 4.094042e-04	k: 1275	n:3290000
TECPR1   3290000 perm   4689 sec   (702 perm/sec)   p_kst 3.875380e-04   p_cons 8.829267e-01   p_joint 3.875380e-04

Joint ci ratio: 1.096318e-01	ci left: 3.660378e-04	ci right 4.087862e-04	k: 1277	n:3300000
Cons ci ratio: 7.856721e-04	ci left: 8.826054e-01	ci right 8.832994e-01	k: 2913744	n:3300000
KS ci ratio: 1.096318e-01	ci left: 3.660378e-04	ci right 4.087862e-04	k: 1277	n:3300000
TECPR1   3300000 perm   4716 sec   (700 perm/sec)   p_kst 3.869697e-04   p_cons 8.829527e-01   p_joint 3.869697e-04

Joint ci ratio: 1.093327e-01	ci left: 3.669889e-04	ci right 4.097239e-04	k: 1284	n:3310000
Cons ci ratio: 7.844574e-04	ci left: 8.826130e-01	ci right 8.833060e-01	k: 2922597	n:3310000
KS ci ratio: 1.093327e-01	ci left: 3.669889e-04	ci right 4.097239e-04	k: 1284	n:3310000
TECPR1   3310000 perm   4743 sec   (698 perm/sec)   p_kst 3.879154e-04   p_cons 8.829598e-01   p_joint 3.879154e-04

Joint ci ratio: 1.092478e-01	ci left: 3.664694e-04	ci right 4.091087e-04	k: 1286	n:3320000
Cons ci ratio: 7.833009e-04	ci left: 8.826067e-01	ci right 8.832986e-01	k: 2931404	n:3320000
KS ci ratio: 1.092478e-01	ci left: 3.664694e-04	ci right 4.091087e-04	k: 1286	n:3320000
TECPR1   3320000 perm   4770 sec   (696 perm/sec)   p_kst 3.873494e-04   p_cons 8.829530e-01   p_joint 3.873494e-04

Joint ci ratio: 1.091630e-01	ci left: 3.659531e-04	ci right 4.084971e-04	k: 1288	n:3330000
Cons ci ratio: 7.821927e-04	ci left: 8.825890e-01	ci right 8.832800e-01	k: 2940173	n:3330000
KS ci ratio: 1.091630e-01	ci left: 3.659531e-04	ci right 4.084971e-04	k: 1288	n:3330000
TECPR1   3330000 perm   4796 sec   (694 perm/sec)   p_kst 3.867868e-04   p_cons 8.829348e-01   p_joint 3.867868e-04

Joint ci ratio: 1.089940e-01	ci left: 3.660224e-04	ci right 4.085043e-04	k: 1292	n:3340000
Cons ci ratio: 7.809952e-04	ci left: 8.825964e-01	ci right 8.832862e-01	k: 2949025	n:3340000
KS ci ratio: 1.089940e-01	ci left: 3.660224e-04	ci right 4.085043e-04	k: 1292	n:3340000
TECPR1   3340000 perm   4822 sec   (693 perm/sec)   p_kst 3.868263e-04   p_cons 8.829416e-01   p_joint 3.868263e-04

Joint ci ratio: 1.088258e-01	ci left: 3.660913e-04	ci right 4.085115e-04	k: 1296	n:3350000
Cons ci ratio: 7.797841e-04	ci left: 8.826087e-01	ci right 8.832975e-01	k: 2957894	n:3350000
KS ci ratio: 1.088258e-01	ci left: 3.660913e-04	ci right 4.085115e-04	k: 1296	n:3350000
TECPR1   3350000 perm   4849 sec   (691 perm/sec)   p_kst 3.868657e-04   p_cons 8.829534e-01   p_joint 3.868657e-04

Joint ci ratio: 1.085333e-01	ci left: 3.670284e-04	ci right 4.094356e-04	k: 1303	n:3360000
Cons ci ratio: 7.785797e-04	ci left: 8.826207e-01	ci right 8.833084e-01	k: 2966762	n:3360000
KS ci ratio: 1.085333e-01	ci left: 3.670284e-04	ci right 4.094356e-04	k: 1303	n:3360000
TECPR1   3360000 perm   4875 sec   (689 perm/sec)   p_kst 3.877976e-04   p_cons 8.829649e-01   p_joint 3.877976e-04

Joint ci ratio: 1.082844e-01	ci left: 3.676715e-04	ci right 4.100493e-04	k: 1309	n:3370000
Cons ci ratio: 7.774077e-04	ci left: 8.826255e-01	ci right 8.833122e-01	k: 2975606	n:3370000
KS ci ratio: 1.082844e-01	ci left: 3.676715e-04	ci right 4.100493e-04	k: 1309	n:3370000
TECPR1   3370000 perm   4901 sec   (688 perm/sec)   p_kst 3.884273e-04   p_cons 8.829691e-01   p_joint 3.884273e-04

Joint ci ratio: 1.079962e-01	ci left: 3.685987e-04	ci right 4.109631e-04	k: 1316	n:3380000
Cons ci ratio: 7.762320e-04	ci left: 8.826326e-01	ci right 8.833182e-01	k: 2984458	n:3380000
KS ci ratio: 1.079962e-01	ci left: 3.685987e-04	ci right 4.109631e-04	k: 1316	n:3380000
TECPR1   3380000 perm   4929 sec   (686 perm/sec)   p_kst 3.893491e-04   p_cons 8.829757e-01   p_joint 3.893491e-04

Joint ci ratio: 1.078326e-01	ci left: 3.686595e-04	ci right 4.109626e-04	k: 1320	n:3390000
Cons ci ratio: 7.750352e-04	ci left: 8.826467e-01	ci right 8.833314e-01	k: 2993334	n:3390000
KS ci ratio: 1.078326e-01	ci left: 3.686595e-04	ci right 4.109626e-04	k: 1320	n:3390000
TECPR1   3390000 perm   4956 sec   (684 perm/sec)   p_kst 3.893805e-04   p_cons 8.829894e-01   p_joint 3.893805e-04

Joint ci ratio: 1.076291e-01	ci left: 3.690061e-04	ci right 4.112641e-04	k: 1325	n:3400000
Cons ci ratio: 7.738438e-04	ci left: 8.826608e-01	ci right 8.833444e-01	k: 3002210	n:3400000
KS ci ratio: 1.076291e-01	ci left: 3.690061e-04	ci right 4.112641e-04	k: 1325	n:3400000
TECPR1   3400000 perm   4983 sec   (682 perm/sec)   p_kst 3.897059e-04   p_cons 8.830029e-01   p_joint 3.897059e-04

Joint ci ratio: 1.073863e-01	ci left: 3.696362e-04	ci right 4.118649e-04	k: 1331	n:3410000
Cons ci ratio: 7.728103e-04	ci left: 8.826340e-01	ci right 8.833167e-01	k: 3010947	n:3410000
KS ci ratio: 1.073863e-01	ci left: 3.696362e-04	ci right 4.118649e-04	k: 1331	n:3410000
TECPR1   3410000 perm   5010 sec   (681 perm/sec)   p_kst 3.903226e-04   p_cons 8.829757e-01   p_joint 3.903226e-04

Joint ci ratio: 1.073864e-01	ci left: 3.685554e-04	ci right 4.106606e-04	k: 1331	n:3420000
Cons ci ratio: 7.716641e-04	ci left: 8.826387e-01	ci right 8.833203e-01	k: 3019791	n:3420000
KS ci ratio: 1.073864e-01	ci left: 3.685554e-04	ci right 4.106606e-04	k: 1331	n:3420000
TECPR1   3420000 perm   5038 sec   (679 perm/sec)   p_kst 3.891813e-04   p_cons 8.829798e-01   p_joint 3.891813e-04

Joint ci ratio: 1.072255e-01	ci left: 3.686158e-04	ci right 4.106608e-04	k: 1335	n:3430000
Cons ci ratio: 7.705425e-04	ci left: 8.826381e-01	ci right 8.833187e-01	k: 3028617	n:3430000
KS ci ratio: 1.072255e-01	ci left: 3.686158e-04	ci right 4.106608e-04	k: 1335	n:3430000
TECPR1   3430000 perm   5066 sec   (677 perm/sec)   p_kst 3.892128e-04   p_cons 8.829787e-01   p_joint 3.892128e-04

Joint ci ratio: 1.071054e-01	ci left: 3.683930e-04	ci right 4.103625e-04	k: 1338	n:3440000
Cons ci ratio: 7.694171e-04	ci left: 8.826398e-01	ci right 8.833194e-01	k: 3037451	n:3440000
KS ci ratio: 1.071054e-01	ci left: 3.683930e-04	ci right 4.103625e-04	k: 1338	n:3440000
TECPR1   3440000 perm   5094 sec   (675 perm/sec)   p_kst 3.889535e-04   p_cons 8.829799e-01   p_joint 3.889535e-04

Joint ci ratio: 1.070255e-01	ci left: 3.678893e-04	ci right 4.097683e-04	k: 1340	n:3450000
Cons ci ratio: 7.682795e-04	ci left: 8.826461e-01	ci right 8.833248e-01	k: 3046301	n:3450000
KS ci ratio: 1.070255e-01	ci left: 3.678893e-04	ci right 4.097683e-04	k: 1340	n:3450000
TECPR1   3450000 perm   5121 sec   (674 perm/sec)   p_kst 3.884058e-04   p_cons 8.829858e-01   p_joint 3.884058e-04

Joint ci ratio: 1.067868e-01	ci left: 3.685138e-04	ci right 4.103644e-04	k: 1346	n:3460000
Cons ci ratio: 7.671640e-04	ci left: 8.826478e-01	ci right 8.833255e-01	k: 3055135	n:3460000
KS ci ratio: 1.067868e-01	ci left: 3.685138e-04	ci right 4.103644e-04	k: 1346	n:3460000
TECPR1   3460000 perm   5150 sec   (672 perm/sec)   p_kst 3.890173e-04   p_cons 8.829870e-01   p_joint 3.890173e-04

Joint ci ratio: 1.067869e-01	ci left: 3.674518e-04	ci right 4.091818e-04	k: 1346	n:3470000
Cons ci ratio: 7.661164e-04	ci left: 8.826325e-01	ci right 8.833092e-01	k: 3063910	n:3470000
KS ci ratio: 1.067869e-01	ci left: 3.674518e-04	ci right 4.091818e-04	k: 1346	n:3470000
TECPR1   3470000 perm   5178 sec   (670 perm/sec)   p_kst 3.878963e-04   p_cons 8.829712e-01   p_joint 3.878963e-04

Joint ci ratio: 1.067077e-01	ci left: 3.669553e-04	ci right 4.085961e-04	k: 1348	n:3480000
Cons ci ratio: 7.650294e-04	ci left: 8.826290e-01	ci right 8.833048e-01	k: 3072726	n:3480000
KS ci ratio: 1.067077e-01	ci left: 3.669553e-04	ci right 4.085961e-04	k: 1348	n:3480000
TECPR1   3480000 perm   5206 sec   (669 perm/sec)   p_kst 3.873563e-04   p_cons 8.829672e-01   p_joint 3.873563e-04

Joint ci ratio: 1.066682e-01	ci left: 3.661827e-04	ci right 4.077195e-04	k: 1349	n:3490000
Cons ci ratio: 7.638846e-04	ci left: 8.826425e-01	ci right 8.833173e-01	k: 3081601	n:3490000
KS ci ratio: 1.066682e-01	ci left: 3.661827e-04	ci right 4.077195e-04	k: 1349	n:3490000
TECPR1   3490000 perm   5234 sec   (667 perm/sec)   p_kst 3.865330e-04   p_cons 8.829802e-01   p_joint 3.865330e-04

Joint ci ratio: 1.065893e-01	ci left: 3.656926e-04	ci right 4.071412e-04	k: 1351	n:3500000
Cons ci ratio: 7.627839e-04	ci left: 8.826454e-01	ci right 8.833192e-01	k: 3090439	n:3500000
KS ci ratio: 1.065893e-01	ci left: 3.656926e-04	ci right 4.071412e-04	k: 1351	n:3500000
TECPR1   3500000 perm   5262 sec   (665 perm/sec)   p_kst 3.860000e-04   p_cons 8.829826e-01   p_joint 3.860000e-04

Joint ci ratio: 1.064320e-01	ci left: 3.657600e-04	ci right 4.071512e-04	k: 1355	n:3510000
Cons ci ratio: 7.616943e-04	ci left: 8.826465e-01	ci right 8.833193e-01	k: 3099271	n:3510000
KS ci ratio: 1.064320e-01	ci left: 3.657600e-04	ci right 4.071512e-04	k: 1355	n:3510000
TECPR1   3510000 perm   5290 sec   (663 perm/sec)   p_kst 3.860399e-04   p_cons 8.829832e-01   p_joint 3.860399e-04

Joint ci ratio: 1.063536e-01	ci left: 3.652740e-04	ci right 4.065779e-04	k: 1357	n:3520000
Cons ci ratio: 7.606030e-04	ci left: 8.826493e-01	ci right 8.833211e-01	k: 3108109	n:3520000
KS ci ratio: 1.063536e-01	ci left: 3.652740e-04	ci right 4.065779e-04	k: 1357	n:3520000
TECPR1   3520000 perm   5319 sec   (662 perm/sec)   p_kst 3.855114e-04   p_cons 8.829855e-01   p_joint 3.855114e-04

Joint ci ratio: 1.061194e-01	ci left: 3.658938e-04	ci right 4.071709e-04	k: 1363	n:3530000
Cons ci ratio: 7.595612e-04	ci left: 8.826399e-01	ci right 8.833108e-01	k: 3116904	n:3530000
KS ci ratio: 1.061194e-01	ci left: 3.658938e-04	ci right 4.071709e-04	k: 1363	n:3530000
TECPR1   3530000 perm   5347 sec   (660 perm/sec)   p_kst 3.861190e-04   p_cons 8.829756e-01   p_joint 3.861190e-04

Joint ci ratio: 1.059254e-01	ci left: 3.662352e-04	ci right 4.074706e-04	k: 1368	n:3540000
Cons ci ratio: 7.584666e-04	ci left: 8.826461e-01	ci right 8.833160e-01	k: 3125754	n:3540000
KS ci ratio: 1.059254e-01	ci left: 3.662352e-04	ci right 4.074706e-04	k: 1368	n:3540000
TECPR1   3540000 perm   5376 sec   (659 perm/sec)   p_kst 3.864407e-04   p_cons 8.829814e-01   p_joint 3.864407e-04

Joint ci ratio: 1.057325e-01	ci left: 3.665747e-04	ci right 4.077685e-04	k: 1373	n:3550000
Cons ci ratio: 7.573891e-04	ci left: 8.826488e-01	ci right 8.833179e-01	k: 3134592	n:3550000
KS ci ratio: 1.057325e-01	ci left: 3.665747e-04	ci right 4.077685e-04	k: 1373	n:3550000
TECPR1   3550000 perm   5404 sec   (657 perm/sec)   p_kst 3.867606e-04   p_cons 8.829837e-01   p_joint 3.867606e-04

Joint ci ratio: 1.055789e-01	ci left: 3.666389e-04	ci right 4.077764e-04	k: 1377	n:3560000
Cons ci ratio: 7.562988e-04	ci left: 8.826564e-01	ci right 8.833245e-01	k: 3143447	n:3560000
KS ci ratio: 1.055789e-01	ci left: 3.666389e-04	ci right 4.077764e-04	k: 1377	n:3560000
TECPR1   3560000 perm   5433 sec   (655 perm/sec)   p_kst 3.867978e-04   p_cons 8.829907e-01   p_joint 3.867978e-04

Joint ci ratio: 1.054642e-01	ci left: 3.664301e-04	ci right 4.074967e-04	k: 1380	n:3570000
Cons ci ratio: 7.552530e-04	ci left: 8.826530e-01	ci right 8.833201e-01	k: 3152263	n:3570000
KS ci ratio: 1.054642e-01	ci left: 3.664301e-04	ci right 4.074967e-04	k: 1380	n:3570000
TECPR1   3570000 perm   5462 sec   (654 perm/sec)   p_kst 3.865546e-04   p_cons 8.829868e-01   p_joint 3.865546e-04

Joint ci ratio: 1.051979e-01	ci left: 3.673103e-04	ci right 4.083652e-04	k: 1387	n:3580000
Cons ci ratio: 7.542208e-04	ci left: 8.826470e-01	ci right 8.833133e-01	k: 3161070	n:3580000
KS ci ratio: 1.051979e-01	ci left: 3.673103e-04	ci right 4.083652e-04	k: 1387	n:3580000
TECPR1   3580000 perm   5491 sec   (652 perm/sec)   p_kst 3.874302e-04   p_cons 8.829804e-01   p_joint 3.874302e-04

Joint ci ratio: 1.050466e-01	ci left: 3.673721e-04	ci right 4.083712e-04	k: 1391	n:3590000
Cons ci ratio: 7.531755e-04	ci left: 8.826459e-01	ci right 8.833112e-01	k: 3169894	n:3590000
KS ci ratio: 1.050466e-01	ci left: 3.673721e-04	ci right 4.083712e-04	k: 1391	n:3590000
TECPR1   3590000 perm   5520 sec   (650 perm/sec)   p_kst 3.874652e-04   p_cons 8.829788e-01   p_joint 3.874652e-04

Joint ci ratio: 1.049336e-01	ci left: 3.671630e-04	ci right 4.080920e-04	k: 1394	n:3600000
Cons ci ratio: 7.521699e-04	ci left: 8.826350e-01	ci right 8.832994e-01	k: 3178683	n:3600000
KS ci ratio: 1.049336e-01	ci left: 3.671630e-04	ci right 4.080920e-04	k: 1394	n:3600000
TECPR1   3600000 perm   5549 sec   (649 perm/sec)   p_kst 3.872222e-04   p_cons 8.829675e-01   p_joint 3.872222e-04

Joint ci ratio: 1.048961e-01	ci left: 3.664157e-04	ci right 4.072458e-04	k: 1395	n:3610000
Cons ci ratio: 7.511794e-04	ci left: 8.826211e-01	ci right 8.832846e-01	k: 3187461	n:3610000
KS ci ratio: 1.048961e-01	ci left: 3.664157e-04	ci right 4.072458e-04	k: 1395	n:3610000
TECPR1   3610000 perm   5578 sec   (647 perm/sec)   p_kst 3.864266e-04   p_cons 8.829532e-01   p_joint 3.864266e-04

Joint ci ratio: 1.047461e-01	ci left: 3.664795e-04	ci right 4.072548e-04	k: 1399	n:3620000
Cons ci ratio: 7.501056e-04	ci left: 8.826314e-01	ci right 8.832940e-01	k: 3196326	n:3620000
KS ci ratio: 1.047461e-01	ci left: 3.664795e-04	ci right 4.072548e-04	k: 1399	n:3620000
TECPR1   3620000 perm   5608 sec   (646 perm/sec)   p_kst 3.864641e-04   p_cons 8.829630e-01   p_joint 3.864641e-04

Joint ci ratio: 1.046714e-01	ci left: 3.660065e-04	ci right 4.066983e-04	k: 1401	n:3630000
Cons ci ratio: 7.490643e-04	ci left: 8.826339e-01	ci right 8.832955e-01	k: 3205163	n:3630000
KS ci ratio: 1.046714e-01	ci left: 3.660065e-04	ci right 4.066983e-04	k: 1401	n:3630000
TECPR1   3630000 perm   5637 sec   (644 perm/sec)   p_kst 3.859504e-04   p_cons 8.829650e-01   p_joint 3.859504e-04

Joint ci ratio: 1.045224e-01	ci left: 3.660711e-04	ci right 4.067086e-04	k: 1405	n:3640000
Cons ci ratio: 7.480135e-04	ci left: 8.826402e-01	ci right 8.833009e-01	k: 3214014	n:3640000
KS ci ratio: 1.045224e-01	ci left: 3.660711e-04	ci right 4.067086e-04	k: 1405	n:3640000
TECPR1   3640000 perm   5666 sec   (642 perm/sec)   p_kst 3.859890e-04   p_cons 8.829709e-01   p_joint 3.859890e-04

Joint ci ratio: 1.043370e-01	ci left: 3.664023e-04	ci right 4.070000e-04	k: 1410	n:3650000
Cons ci ratio: 7.470294e-04	ci left: 8.826292e-01	ci right 8.832891e-01	k: 3222802	n:3650000
KS ci ratio: 1.043370e-01	ci left: 3.664023e-04	ci right 4.070000e-04	k: 1410	n:3650000
TECPR1   3650000 perm   5696 sec   (641 perm/sec)   p_kst 3.863014e-04   p_cons 8.829595e-01   p_joint 3.863014e-04

Joint ci ratio: 1.041895e-01	ci left: 3.664656e-04	ci right 4.070093e-04	k: 1414	n:3660000
Cons ci ratio: 7.459594e-04	ci left: 8.826432e-01	ci right 8.833021e-01	k: 3231681	n:3660000
KS ci ratio: 1.041895e-01	ci left: 3.664656e-04	ci right 4.070093e-04	k: 1414	n:3660000
TECPR1   3660000 perm   5725 sec   (639 perm/sec)   p_kst 3.863388e-04   p_cons 8.829730e-01   p_joint 3.863388e-04

Joint ci ratio: 1.040792e-01	ci left: 3.662632e-04	ci right 4.067390e-04	k: 1417	n:3670000
Cons ci ratio: 7.448862e-04	ci left: 8.826593e-01	ci right 8.833172e-01	k: 3240568	n:3670000
KS ci ratio: 1.040792e-01	ci left: 3.662632e-04	ci right 4.067390e-04	k: 1417	n:3670000
TECPR1   3670000 perm   5754 sec   (638 perm/sec)   p_kst 3.861035e-04   p_cons 8.829886e-01   p_joint 3.861035e-04

Joint ci ratio: 1.037868e-01	ci left: 3.673853e-04	ci right 4.078641e-04	k: 1425	n:3680000
Cons ci ratio: 7.438547e-04	ci left: 8.826649e-01	ci right 8.833220e-01	k: 3249417	n:3680000
KS ci ratio: 1.037868e-01	ci left: 3.673853e-04	ci right 4.078641e-04	k: 1425	n:3680000
TECPR1   3680000 perm   5783 sec   (636 perm/sec)   p_kst 3.872283e-04   p_cons 8.829938e-01   p_joint 3.872283e-04

Joint ci ratio: 1.036415e-01	ci left: 3.674456e-04	ci right 4.078709e-04	k: 1429	n:3690000
Cons ci ratio: 7.428694e-04	ci left: 8.826589e-01	ci right 8.833151e-01	k: 3258223	n:3690000
KS ci ratio: 1.036415e-01	ci left: 3.674456e-04	ci right 4.078709e-04	k: 1429	n:3690000
TECPR1   3690000 perm   5812 sec   (635 perm/sec)   p_kst 3.872629e-04   p_cons 8.829873e-01   p_joint 3.872629e-04

Joint ci ratio: 1.035692e-01	ci left: 3.669790e-04	ci right 4.073231e-04	k: 1431	n:3700000
Cons ci ratio: 7.418541e-04	ci left: 8.826623e-01	ci right 8.833176e-01	k: 3267064	n:3700000
KS ci ratio: 1.035692e-01	ci left: 3.669790e-04	ci right 4.073231e-04	k: 1431	n:3700000
TECPR1   3700000 perm   5843 sec   (633 perm/sec)   p_kst 3.867568e-04   p_cons 8.829903e-01   p_joint 3.867568e-04

Joint ci ratio: 1.033888e-01	ci left: 3.673027e-04	ci right 4.076078e-04	k: 1436	n:3710000
Cons ci ratio: 7.408574e-04	ci left: 8.826617e-01	ci right 8.833161e-01	k: 3275890	n:3710000
KS ci ratio: 1.033888e-01	ci left: 3.673027e-04	ci right 4.076078e-04	k: 1436	n:3710000
TECPR1   3710000 perm   5872 sec   (632 perm/sec)   p_kst 3.870620e-04   p_cons 8.829892e-01   p_joint 3.870620e-04

Joint ci ratio: 1.032452e-01	ci left: 3.673628e-04	ci right 4.076151e-04	k: 1440	n:3720000
Cons ci ratio: 7.398599e-04	ci left: 8.826624e-01	ci right 8.833160e-01	k: 3284721	n:3720000
KS ci ratio: 1.032452e-01	ci left: 3.673628e-04	ci right 4.076151e-04	k: 1440	n:3720000
TECPR1   3720000 perm   5901 sec   (630 perm/sec)   p_kst 3.870968e-04   p_cons 8.829895e-01   p_joint 3.870968e-04

Joint ci ratio: 1.031379e-01	ci left: 3.671614e-04	ci right 4.073474e-04	k: 1443	n:3730000
Cons ci ratio: 7.388932e-04	ci left: 8.826557e-01	ci right 8.833084e-01	k: 3293524	n:3730000
KS ci ratio: 1.031379e-01	ci left: 3.671614e-04	ci right 4.073474e-04	k: 1443	n:3730000
TECPR1   3730000 perm   5930 sec   (629 perm/sec)   p_kst 3.868633e-04   p_cons 8.829823e-01   p_joint 3.868633e-04

Joint ci ratio: 1.029243e-01	ci left: 3.677427e-04	ci right 4.079038e-04	k: 1449	n:3740000
Cons ci ratio: 7.378931e-04	ci left: 8.826594e-01	ci right 8.833112e-01	k: 3302366	n:3740000
KS ci ratio: 1.029243e-01	ci left: 3.677427e-04	ci right 4.079038e-04	k: 1449	n:3740000
TECPR1   3740000 perm   5959 sec   (628 perm/sec)   p_kst 3.874332e-04   p_cons 8.829856e-01   p_joint 3.874332e-04

Joint ci ratio: 1.028534e-01	ci left: 3.672816e-04	ci right 4.073631e-04	k: 1451	n:3750000
Cons ci ratio: 7.369351e-04	ci left: 8.826524e-01	ci right 8.833033e-01	k: 3311168	n:3750000
KS ci ratio: 1.028534e-01	ci left: 3.672816e-04	ci right 4.073631e-04	k: 1451	n:3750000
TECPR1   3750000 perm   5989 sec   (626 perm/sec)   p_kst 3.869333e-04   p_cons 8.829781e-01   p_joint 3.869333e-04

Joint ci ratio: 1.027473e-01	ci left: 3.670822e-04	ci right 4.070981e-04	k: 1454	n:3760000
Cons ci ratio: 7.359438e-04	ci left: 8.826558e-01	ci right 8.833059e-01	k: 3320009	n:3760000
KS ci ratio: 1.027473e-01	ci left: 3.670822e-04	ci right 4.070981e-04	k: 1454	n:3760000
TECPR1   3760000 perm   6018 sec   (625 perm/sec)   p_kst 3.867021e-04   p_cons 8.829811e-01   p_joint 3.867021e-04

Joint ci ratio: 1.027474e-01	ci left: 3.661085e-04	ci right 4.060182e-04	k: 1454	n:3770000
Cons ci ratio: 7.349198e-04	ci left: 8.826695e-01	ci right 8.833187e-01	k: 3328889	n:3770000
KS ci ratio: 1.027474e-01	ci left: 3.661085e-04	ci right 4.060182e-04	k: 1454	n:3770000
TECPR1   3770000 perm   6047 sec   (623 perm/sec)   p_kst 3.856764e-04   p_cons 8.829944e-01   p_joint 3.856764e-04

Joint ci ratio: 1.025361e-01	ci left: 3.666865e-04	ci right 4.065722e-04	k: 1460	n:3780000
Cons ci ratio: 7.339949e-04	ci left: 8.826565e-01	ci right 8.833048e-01	k: 3337668	n:3780000
KS ci ratio: 1.025361e-01	ci left: 3.666865e-04	ci right 4.065722e-04	k: 1460	n:3780000
TECPR1   3780000 perm   6077 sec   (622 perm/sec)   p_kst 3.862434e-04   p_cons 8.829810e-01   p_joint 3.862434e-04

Joint ci ratio: 1.023961e-01	ci left: 3.667473e-04	ci right 4.065819e-04	k: 1464	n:3790000
Cons ci ratio: 7.329986e-04	ci left: 8.826646e-01	ci right 8.833121e-01	k: 3346527	n:3790000
KS ci ratio: 1.023961e-01	ci left: 3.667473e-04	ci right 4.065819e-04	k: 1464	n:3790000
TECPR1   3790000 perm   6107 sec   (621 perm/sec)   p_kst 3.862797e-04   p_cons 8.829887e-01   p_joint 3.862797e-04

Joint ci ratio: 1.022566e-01	ci left: 3.668079e-04	ci right 4.065915e-04	k: 1468	n:3800000
Cons ci ratio: 7.320427e-04	ci left: 8.826624e-01	ci right 8.833091e-01	k: 3355347	n:3800000
KS ci ratio: 1.022566e-01	ci left: 3.668079e-04	ci right 4.065915e-04	k: 1468	n:3800000
TECPR1   3800000 perm   6137 sec   (619 perm/sec)   p_kst 3.863158e-04   p_cons 8.829861e-01   p_joint 3.863158e-04

Joint ci ratio: 1.021870e-01	ci left: 3.663567e-04	ci right 4.060626e-04	k: 1470	n:3810000
Cons ci ratio: 7.310720e-04	ci left: 8.826655e-01	ci right 8.833113e-01	k: 3364187	n:3810000
KS ci ratio: 1.021870e-01	ci left: 3.663567e-04	ci right 4.060626e-04	k: 1470	n:3810000
TECPR1   3810000 perm   6167 sec   (618 perm/sec)   p_kst 3.858268e-04   p_cons 8.829887e-01   p_joint 3.858268e-04

Joint ci ratio: 1.020484e-01	ci left: 3.664180e-04	ci right 4.060735e-04	k: 1474	n:3820000
Cons ci ratio: 7.301393e-04	ci left: 8.826589e-01	ci right 8.833039e-01	k: 3372990	n:3820000
KS ci ratio: 1.020484e-01	ci left: 3.664180e-04	ci right 4.060735e-04	k: 1474	n:3820000
TECPR1   3820000 perm   6197 sec   (616 perm/sec)   p_kst 3.858639e-04   p_cons 8.829817e-01   p_joint 3.858639e-04

Joint ci ratio: 1.018071e-01	ci left: 3.672424e-04	ci right 4.068875e-04	k: 1481	n:3830000
Cons ci ratio: 7.292240e-04	ci left: 8.826484e-01	ci right 8.832925e-01	k: 3381778	n:3830000
KS ci ratio: 1.018071e-01	ci left: 3.672424e-04	ci right 4.068875e-04	k: 1481	n:3830000
TECPR1   3830000 perm   6228 sec   (615 perm/sec)   p_kst 3.866841e-04   p_cons 8.829708e-01   p_joint 3.866841e-04

Joint ci ratio: 1.017042e-01	ci left: 3.670474e-04	ci right 4.066290e-04	k: 1484	n:3840000
Cons ci ratio: 7.282865e-04	ci left: 8.826452e-01	ci right 8.832885e-01	k: 3390594	n:3840000
KS ci ratio: 1.017042e-01	ci left: 3.670474e-04	ci right 4.066290e-04	k: 1484	n:3840000
TECPR1   3840000 perm   6258 sec   (614 perm/sec)   p_kst 3.864583e-04   p_cons 8.829672e-01   p_joint 3.864583e-04

Joint ci ratio: 1.015675e-01	ci left: 3.671066e-04	ci right 4.066382e-04	k: 1488	n:3850000
Cons ci ratio: 7.273589e-04	ci left: 8.826403e-01	ci right 8.832828e-01	k: 3399403	n:3850000
KS ci ratio: 1.015675e-01	ci left: 3.671066e-04	ci right 4.066382e-04	k: 1488	n:3850000
TECPR1   3850000 perm   6289 sec   (612 perm/sec)   p_kst 3.864935e-04   p_cons 8.829618e-01   p_joint 3.864935e-04

Joint ci ratio: 1.014653e-01	ci left: 3.669130e-04	ci right 4.063817e-04	k: 1491	n:3860000
Cons ci ratio: 7.263530e-04	ci left: 8.826587e-01	ci right 8.833003e-01	k: 3408302	n:3860000
KS ci ratio: 1.014653e-01	ci left: 3.669130e-04	ci right 4.063817e-04	k: 1491	n:3860000
TECPR1   3860000 perm   6321 sec   (611 perm/sec)   p_kst 3.862694e-04   p_cons 8.829798e-01   p_joint 3.862694e-04

Joint ci ratio: 1.012957e-01	ci left: 3.672241e-04	ci right 4.066563e-04	k: 1496	n:3870000
Cons ci ratio: 7.253575e-04	ci left: 8.826752e-01	ci right 8.833159e-01	k: 3417194	n:3870000
KS ci ratio: 1.012957e-01	ci left: 3.672241e-04	ci right 4.066563e-04	k: 1496	n:3870000
TECPR1   3870000 perm   6352 sec   (609 perm/sec)   p_kst 3.865633e-04   p_cons 8.829959e-01   p_joint 3.865633e-04

Joint ci ratio: 1.012281e-01	ci left: 3.667801e-04	ci right 4.061368e-04	k: 1498	n:3880000
Cons ci ratio: 7.244339e-04	ci left: 8.826723e-01	ci right 8.833122e-01	k: 3426011	n:3880000
KS ci ratio: 1.012281e-01	ci left: 3.667801e-04	ci right 4.061368e-04	k: 1498	n:3880000
TECPR1   3880000 perm   6382 sec   (608 perm/sec)   p_kst 3.860825e-04   p_cons 8.829925e-01   p_joint 3.860825e-04

Joint ci ratio: 1.009590e-01	ci left: 3.678418e-04	ci right 4.072012e-04	k: 1506	n:3890000
Cons ci ratio: 7.235317e-04	ci left: 8.826642e-01	ci right 8.833033e-01	k: 3434808	n:3890000
KS ci ratio: 1.009590e-01	ci left: 3.678418e-04	ci right 4.072012e-04	k: 1506	n:3890000
TECPR1   3890000 perm   6413 sec   (607 perm/sec)   p_kst 3.871465e-04   p_cons 8.829841e-01   p_joint 3.871465e-04

Joint ci ratio: 1.008587e-01	ci left: 3.676484e-04	ci right 4.069458e-04	k: 1509	n:3900000
Cons ci ratio: 7.225631e-04	ci left: 8.826762e-01	ci right 8.833145e-01	k: 3443683	n:3900000
KS ci ratio: 1.008587e-01	ci left: 3.676484e-04	ci right 4.069458e-04	k: 1509	n:3900000
TECPR1   3900000 perm   6444 sec   (605 perm/sec)   p_kst 3.869231e-04   p_cons 8.829956e-01   p_joint 3.869231e-04

Joint ci ratio: 1.007920e-01	ci left: 3.672067e-04	ci right 4.064294e-04	k: 1511	n:3910000
Cons ci ratio: 7.216170e-04	ci left: 8.826828e-01	ci right 8.833202e-01	k: 3452537	n:3910000
KS ci ratio: 1.007920e-01	ci left: 3.672067e-04	ci right 4.064294e-04	k: 1511	n:3910000
TECPR1   3910000 perm   6475 sec   (604 perm/sec)   p_kst 3.864450e-04   p_cons 8.830018e-01   p_joint 3.864450e-04

Joint ci ratio: 1.007254e-01	ci left: 3.667673e-04	ci right 4.059156e-04	k: 1513	n:3920000
Cons ci ratio: 7.207423e-04	ci left: 8.826699e-01	ci right 8.833066e-01	k: 3461315	n:3920000
KS ci ratio: 1.007254e-01	ci left: 3.667673e-04	ci right 4.059156e-04	k: 1513	n:3920000
TECPR1   3920000 perm   6506 sec   (602 perm/sec)   p_kst 3.859694e-04   p_cons 8.829885e-01   p_joint 3.859694e-04

Joint ci ratio: 1.005264e-01	ci left: 3.673224e-04	ci right 4.064479e-04	k: 1519	n:3930000
Cons ci ratio: 7.197909e-04	ci left: 8.826800e-01	ci right 8.833158e-01	k: 3470183	n:3930000
KS ci ratio: 1.005264e-01	ci left: 3.673224e-04	ci right 4.064479e-04	k: 1519	n:3930000
TECPR1   3930000 perm   6538 sec   (601 perm/sec)   p_kst 3.865140e-04   p_cons 8.829982e-01   p_joint 3.865140e-04

Joint ci ratio: 1.003944e-01	ci left: 3.673798e-04	ci right 4.064570e-04	k: 1523	n:3940000
Cons ci ratio: 7.188972e-04	ci left: 8.826746e-01	ci right 8.833096e-01	k: 3478990	n:3940000
KS ci ratio: 1.003944e-01	ci left: 3.673798e-04	ci right 4.064570e-04	k: 1523	n:3940000
TECPR1   3940000 perm   6570 sec   (600 perm/sec)   p_kst 3.865482e-04   p_cons 8.829924e-01   p_joint 3.865482e-04

Joint ci ratio: 1.001973e-01	ci left: 3.679306e-04	ci right 4.069851e-04	k: 1529	n:3950000
Cons ci ratio: 7.179426e-04	ci left: 8.826877e-01	ci right 8.833219e-01	k: 3487870	n:3950000
KS ci ratio: 1.001973e-01	ci left: 3.679306e-04	ci right 4.069851e-04	k: 1529	n:3950000
TECPR1   3950000 perm   6601 sec   (598 perm/sec)   p_kst 3.870886e-04   p_cons 8.830051e-01   p_joint 3.870886e-04

Joint ci ratio: 1.000993e-01	ci left: 3.677401e-04	ci right 4.067339e-04	k: 1532	n:3960000
Cons ci ratio: 7.170347e-04	ci left: 8.826883e-01	ci right 8.833217e-01	k: 3496701	n:3960000
KS ci ratio: 1.000993e-01	ci left: 3.677401e-04	ci right 4.067339e-04	k: 1532	n:3960000
TECPR1   3960000 perm   6632 sec   (597 perm/sec)   p_kst 3.868687e-04   p_cons 8.830053e-01   p_joint 3.868687e-04

Joint ci ratio: 9.990391e-02	ci left: 3.682873e-04	ci right 4.072585e-04	k: 1538	n:3970000
Cons ci ratio: 7.161110e-04	ci left: 8.826945e-01	ci right 8.833271e-01	k: 3505554	n:3970000
KS ci ratio: 9.990391e-02	ci left: 3.682873e-04	ci right 4.072585e-04	k: 1538	n:3970000
TECPR1   3970000 perm   6665 sec   (596 perm/sec)   p_kst 3.874055e-04   p_cons 8.830111e-01   p_joint 3.874055e-04

Outputting figure to mutsig2_images.part000000000173/TECPR1.2_3594_3970000_0.00038741_0.88301_0.00038741.png
                gene_name: TECPR1
               theta_stop: 0.100 
                    nperm: 3970000 
                     p_ks: 0.00039 
        ci_ks_bounds_left: 0.00037 
       ci_ks_bounds_right: 0.00041 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.00039 
     ci_joint_bounds_left: 0.00037 
    ci_joint_bounds_right: 0.00041 

Current progress: 93 percent done.
TEDDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
Cons ci ratio: 7.733613e-02	ci left: 1.964346e-01	ci right 2.123380e-01	k: 2043	n:10000
KS ci ratio: 1.326553e-02	ci left: 8.911840e-01	ci right 9.031835e-01	k: 8973	n:10000
TEDDM1   10000 perm   1 sec   (6884 perm/sec)   p_kst 8.973000e-01   p_cons 2.043000e-01   p_joint 4.202000e-01

Outputting figure to mutsig2_images.part000000000173/TEDDM1.2_826_10000_0.8973_0.2043_0.4202.png
                gene_name: TEDDM1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 95 percent done.
TEKT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
TEKT1   10000 perm   2 sec   (6577 perm/sec)   p_kst 8.353000e-01   p_cons 2.000000e-01   p_joint 8.505000e-01

Outputting figure to mutsig2_images.part000000000173/TEKT1.2_1285_10000_0.8353_0.2_0.8505.png
                gene_name: TEKT1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 97 percent done.
TFDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
KS ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
TFDP2   10000 perm   2 sec   (6464 perm/sec)   p_kst 5.019000e-01   p_cons 9.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TFDP2.2_1498_10000_0.5019_0.9209_1.png
                gene_name: TFDP2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TFE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
Cons ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
KS ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
TFE3   10000 perm   2 sec   (6450 perm/sec)   p_kst 5.079000e-01   p_cons 2.330000e-02   p_joint 4.370000e-02

Joint ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
Cons ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
KS ci ratio: 2.743525e-02	ci left: 4.981455e-01	ci right 5.120530e-01	k: 10102	n:20000
TFE3   20000 perm   4 sec   (5686 perm/sec)   p_kst 5.051000e-01   p_cons 2.085000e-02   p_joint 3.700000e-02

Joint ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
Cons ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
KS ci ratio: 2.256472e-02	ci left: 4.957922e-01	ci right 5.071409e-01	k: 15044	n:30000
TFE3   30000 perm   6 sec   (5421 perm/sec)   p_kst 5.014667e-01   p_cons 2.090000e-02   p_joint 3.623333e-02

Joint ci ratio: 1.065160e-01	ci left: 3.100294e-02	ci right 3.451532e-02	k: 1309	n:40000
Cons ci ratio: 1.339050e-01	ci left: 1.956886e-02	ci right 2.240128e-02	k: 838	n:40000
KS ci ratio: 1.962574e-02	ci left: 4.944128e-01	ci right 5.042373e-01	k: 19973	n:40000
TFE3   40000 perm   8 sec   (5246 perm/sec)   p_kst 4.993250e-01   p_cons 2.095000e-02   p_joint 3.272500e-02

Joint ci ratio: 9.887077e-02	ci left: 2.897101e-02	ci right 3.200382e-02	k: 1523	n:50000
Cons ci ratio: 1.143072e-01	ci left: 2.166493e-02	ci right 2.431085e-02	k: 1148	n:50000
KS ci ratio: 1.753726e-02	ci left: 4.954075e-01	ci right 5.041925e-01	k: 24990	n:50000
TFE3   50000 perm   10 sec   (5102 perm/sec)   p_kst 4.998000e-01   p_cons 2.296000e-02   p_joint 3.046000e-02

Joint ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
Cons ci ratio: 1.043015e-01	ci left: 2.179908e-02	ci right 2.421402e-02	k: 1379	n:60000
KS ci ratio: 1.596138e-02	ci left: 4.972909e-01	ci right 5.053089e-01	k: 30078	n:60000
TFE3   60000 perm   12 sec   (4983 perm/sec)   p_kst 5.013000e-01   p_cons 2.298333e-02   p_joint 2.065000e-02

Joint ci ratio: 9.724672e-02	ci left: 2.158140e-02	ci right 2.380127e-02	k: 1587	n:70000
Cons ci ratio: 9.604674e-02	ci left: 2.212537e-02	ci right 2.437153e-02	k: 1626	n:70000
KS ci ratio: 1.475000e-02	ci left: 4.985175e-01	ci right 5.059395e-01	k: 35156	n:70000
TFE3   70000 perm   14 sec   (4881 perm/sec)   p_kst 5.022286e-01   p_cons 2.322857e-02   p_joint 2.267143e-02

Outputting figure to mutsig2_images.part000000000173/TFE3.2_1768_70000_0.50223_0.023229_0.022671.png
                gene_name: TFE3
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000173
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 173 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 4422612: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000174> was used as the working directory.
Started at Wed Oct 24 18:09:14 2012
Results reported at Wed Oct 24 18:20:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000174.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000174.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 174  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000174.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    741.33 sec.
    Max Memory :      5319 MB
    Max Swap   :      7923 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
174
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 174
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 174: processing genes 15652 - 15742
Calculating significance of each gene.
Using projection method.
15652	TFF2	5.771537e-01
15653	TFF3	1
15654	TFG	8.410458e-01
15655	TFIP11	9.229798e-01
15656	TFPI	8.080254e-01
15657	TFPI2	5.590986e-02
15658	TFPT	7.972081e-01
15659	TFR2	9.332157e-01
15660	TFRC	6.670685e-01
15661	TG	2.572995e-02
15662	TGDS	6.293444e-01
15663	TGFA	6.768226e-01
15664	TGFB1	6.845079e-01
15665	TGFB1I1	1
15666	TGFB2	1.224586e-02
15667	TGFB3	9.535685e-01
15668	TGFBI	6.255302e-01
15669	TGFBR1	6.906557e-01
15670	TGFBR2	7.770545e-01
15671	TGFBR3	2.041055e-01
15672	TGFBRAP1	9.289081e-01
15673	TGIF1	9.643530e-01
15674	TGIF2	1
15675	TGIF2LX	1.005173e-01
15676	TGIF2LY	1
15677	TGM1	9.882753e-01
15678	TGM2	7.882710e-01
15679	TGM3	9.532182e-01
15680	TGM4	6.928832e-01
15681	TGM5	9.749997e-01
15682	TGM6	4.312795e-01
15683	TGM7	2.156407e-01
15684	TGOLN2	1
15685	TGS1	7.736298e-01
15686	TH	5.665139e-01
15687	TH1L	3.854772e-01
15688	THADA	9.986904e-01
15689	THAP1	5.641560e-01
15690	THAP10	8.235767e-01
15691	THAP11	6.772468e-01
15692	THAP2	4.684903e-01
15693	THAP3	1
15694	THAP4	6.489974e-01
15695	THAP5	2.594971e-01
15696	THAP6	5.155956e-02
15697	THAP7	1
15698	THAP8	7.544328e-01
15699	THAP9	9.657878e-01
15700	THBD	8.684145e-01
15701	THBS1	9.954593e-01
15702	THBS2	1
15703	THBS3	9.952264e-01
15704	THBS4	9.895215e-01
15705	THEG	1
15706	THEM4	6.641086e-01
15707	THEM5	3.200774e-01
15708	THEMIS	7.673732e-06
15709	THG1L	5.489685e-01
15710	THNSL1	7.836111e-01
15711	THNSL2	2.813479e-01
15712	THOC1	9.615505e-01
15713	THOC2	5.406407e-01
15714	THOC3	7.185178e-01
15715	THOC4	1
15716	THOC5	9.568337e-01
15717	THOC6	6.390801e-01
15718	THOC7	1
15719	THOP1	8.455484e-01
15720	THPO	8.620644e-01
15721	THRA	9.660175e-01
15722	THRAP3	6.923264e-01
15723	THRB	5.200544e-01
15724	THRSP	1
15725	THSD1	1
15726	THSD4	4.206661e-01
15727	THSD7A	1.455372e-01
15728	THSD7B	9.202715e-01
15729	THTPA	1
15730	THUMPD1	3.409661e-01
15731	THUMPD2	1.266517e-01
15732	THUMPD3	4.848767e-01
15733	THY1	4.227846e-01
15734	THYN1	1
15735	TIA1	6.913875e-01
15736	TIAF1	1
15737	TIAL1	1
15738	TIAM1	1.751732e-02
15739	TIAM2	8.421087e-01
15740	TICAM1	9.875010e-01
15741	TIE1	9.962844e-01
15742	TIFA	6.489538e-01
Done

Running MutSig 2:
Scatter job 174: processing genes 15652 - 15742
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
KS ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
TG   10000 perm   3 sec   (2995 perm/sec)   p_kst 9.531000e-01   p_cons 6.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TG.38_8499_10000_0.9531_0.616_1.png
                gene_name: TG
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
THSD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
Cons ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
KS ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
THSD7A   10000 perm   3 sec   (3383 perm/sec)   p_kst 7.500000e-03   p_cons 4.657000e-01   p_joint 5.910000e-02

Joint ci ratio: 1.425113e-01	ci left: 3.384702e-02	ci right 3.908886e-02	k: 728	n:20000
Cons ci ratio: 2.983714e-02	ci left: 4.562700e-01	ci right 4.701407e-01	k: 9264	n:20000
KS ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
THSD7A   20000 perm   6 sec   (3123 perm/sec)   p_kst 7.150000e-03   p_cons 4.632000e-01   p_joint 3.640000e-02

Joint ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
Cons ci ratio: 2.442638e-02	ci left: 4.562458e-01	ci right 4.675616e-01	k: 13857	n:30000
KS ci ratio: 2.541604e-01	ci left: 6.866967e-03	ci right 8.896746e-03	k: 235	n:30000
THSD7A   30000 perm   10 sec   (3015 perm/sec)   p_kst 7.833333e-03   p_cons 4.619000e-01   p_joint 2.776667e-02

Joint ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
Cons ci ratio: 2.081579e-02	ci left: 4.650238e-01	ci right 4.748306e-01	k: 18797	n:40000
KS ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
THSD7A   40000 perm   14 sec   (2945 perm/sec)   p_kst 8.600000e-03   p_cons 4.699250e-01   p_joint 2.710000e-02

Joint ci ratio: 1.034023e-01	ci left: 2.649344e-02	ci right 2.940171e-02	k: 1396	n:50000
Cons ci ratio: 1.861556e-02	ci left: 4.656171e-01	ci right 4.743864e-01	k: 23500	n:50000
KS ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
THSD7A   50000 perm   17 sec   (2895 perm/sec)   p_kst 8.260000e-03   p_cons 4.700000e-01   p_joint 2.792000e-02

Joint ci ratio: 1.149398e-01	ci left: 1.792257e-02	ci right 2.012430e-02	k: 1140	n:60000
Cons ci ratio: 1.700051e-02	ci left: 4.657998e-01	ci right 4.738032e-01	k: 28188	n:60000
KS ci ratio: 1.785795e-01	ci left: 7.254952e-03	ci right 8.693253e-03	k: 477	n:60000
THSD7A   60000 perm   21 sec   (2852 perm/sec)   p_kst 7.950000e-03   p_cons 4.698000e-01   p_joint 1.900000e-02

Joint ci ratio: 1.133935e-01	ci left: 1.583307e-02	ci right 1.775014e-02	k: 1174	n:70000
Cons ci ratio: 1.568902e-02	ci left: 4.676962e-01	ci right 4.751062e-01	k: 32998	n:70000
KS ci ratio: 1.651338e-01	ci left: 7.325982e-03	ci right 8.658144e-03	k: 558	n:70000
THSD7A   70000 perm   25 sec   (2794 perm/sec)   p_kst 7.971429e-03   p_cons 4.714000e-01   p_joint 1.677143e-02

Joint ci ratio: 1.013675e-01	ci left: 1.741902e-02	ci right 1.929114e-02	k: 1467	n:80000
Cons ci ratio: 1.465591e-02	ci left: 4.686105e-01	ci right 4.755416e-01	k: 37766	n:80000
KS ci ratio: 1.500181e-01	ci left: 7.827335e-03	ci right 9.108695e-03	k: 676	n:80000
THSD7A   80000 perm   29 sec   (2764 perm/sec)   p_kst 8.450000e-03   p_cons 4.720750e-01   p_joint 1.833750e-02

Joint ci ratio: 9.771683e-02	ci left: 1.670757e-02	ci right 1.843483e-02	k: 1580	n:90000
Cons ci ratio: 1.378969e-02	ci left: 4.698224e-01	ci right 4.763571e-01	k: 42578	n:90000
KS ci ratio: 1.407528e-01	ci left: 7.942728e-03	ci right 9.155934e-03	k: 768	n:90000
THSD7A   90000 perm   33 sec   (2738 perm/sec)   p_kst 8.533333e-03   p_cons 4.730889e-01   p_joint 1.755556e-02

Joint ci ratio: 8.545212e-02	ci left: 1.972856e-02	ci right 2.149940e-02	k: 2060	n:100000
Cons ci ratio: 1.308204e-02	ci left: 4.699913e-01	ci right 4.761902e-01	k: 47309	n:100000
KS ci ratio: 1.331723e-01	ci left: 8.017652e-03	ci right 9.171123e-03	k: 858	n:100000
THSD7A   100000 perm   37 sec   (2707 perm/sec)   p_kst 8.580000e-03   p_cons 4.730900e-01   p_joint 2.060000e-02

Joint ci ratio: 7.605314e-02	ci left: 2.268420e-02	ci right 2.448649e-02	k: 2593	n:110000
Cons ci ratio: 1.247459e-02	ci left: 4.700821e-01	ci right 4.759920e-01	k: 52034	n:110000
KS ci ratio: 1.269681e-01	ci left: 8.045168e-03	ci right 9.144613e-03	k: 944	n:110000
THSD7A   110000 perm   41 sec   (2678 perm/sec)   p_kst 8.581818e-03   p_cons 4.730364e-01   p_joint 2.357273e-02

Joint ci ratio: 7.704536e-02	ci left: 2.030245e-02	ci right 2.193747e-02	k: 2533	n:120000
Cons ci ratio: 1.194420e-02	ci left: 4.701800e-01	ci right 4.758380e-01	k: 56761	n:120000
KS ci ratio: 1.213794e-01	ci left: 8.093384e-03	ci right 9.147236e-03	k: 1033	n:120000
THSD7A   120000 perm   45 sec   (2651 perm/sec)   p_kst 8.608333e-03   p_cons 4.730083e-01   p_joint 2.110833e-02

Joint ci ratio: 7.522365e-02	ci left: 1.969127e-02	ci right 2.123792e-02	k: 2659	n:130000
Cons ci ratio: 1.149461e-02	ci left: 4.694676e-01	ci right 4.749028e-01	k: 61384	n:130000
KS ci ratio: 1.158463e-01	ci left: 8.224727e-03	ci right 9.243522e-03	k: 1134	n:130000
THSD7A   130000 perm   50 sec   (2625 perm/sec)   p_kst 8.723077e-03   p_cons 4.721846e-01   p_joint 2.045385e-02

Joint ci ratio: 7.329618e-02	ci left: 1.928706e-02	ci right 2.076149e-02	k: 2802	n:140000
Cons ci ratio: 1.107916e-02	ci left: 4.694463e-01	ci right 4.746834e-01	k: 66089	n:140000
KS ci ratio: 1.116926e-01	ci left: 8.234056e-03	ci right 9.215026e-03	k: 1220	n:140000
THSD7A   140000 perm   54 sec   (2597 perm/sec)   p_kst 8.714286e-03   p_cons 4.720643e-01   p_joint 2.001429e-02

Joint ci ratio: 6.926418e-02	ci left: 2.018202e-02	ci right 2.163658e-02	k: 3135	n:150000
Cons ci ratio: 1.070889e-02	ci left: 4.692843e-01	ci right 4.743435e-01	k: 70772	n:150000
KS ci ratio: 1.072136e-01	ci left: 8.359504e-03	ci right 9.312961e-03	k: 1324	n:150000
THSD7A   150000 perm   58 sec   (2571 perm/sec)   p_kst 8.826667e-03   p_cons 4.718133e-01   p_joint 2.090000e-02

Joint ci ratio: 6.852336e-02	ci left: 1.935646e-02	ci right 2.073600e-02	k: 3206	n:160000
Cons ci ratio: 1.037367e-02	ci left: 4.691327e-01	ci right 4.740309e-01	k: 75453	n:160000
KS ci ratio: 1.037845e-01	ci left: 8.378612e-03	ci right 9.301818e-03	k: 1413	n:160000
THSD7A   160000 perm   63 sec   (2544 perm/sec)   p_kst 8.831250e-03   p_cons 4.715813e-01   p_joint 2.003750e-02

Joint ci ratio: 6.505429e-02	ci left: 2.023102e-02	ci right 2.159715e-02	k: 3554	n:170000
Cons ci ratio: 1.006654e-02	ci left: 4.690776e-01	ci right 4.738293e-01	k: 80147	n:170000
KS ci ratio: 1.006646e-01	ci left: 8.395901e-03	ci right 9.291557e-03	k: 1502	n:170000
THSD7A   170000 perm   67 sec   (2519 perm/sec)   p_kst 8.835294e-03   p_cons 4.714529e-01   p_joint 2.090588e-02

Joint ci ratio: 5.989382e-02	ci left: 2.254779e-02	ci right 2.394540e-02	k: 4183	n:180000
Cons ci ratio: 9.780908e-03	ci left: 4.692472e-01	ci right 4.738649e-01	k: 84880	n:180000
KS ci ratio: 9.805911e-02	ci left: 8.368274e-03	ci right 9.236546e-03	k: 1583	n:180000
THSD7A   180000 perm   72 sec   (2495 perm/sec)   p_kst 8.794444e-03   p_cons 4.715556e-01   p_joint 2.323889e-02

Outputting figure to mutsig2_images.part000000000174/THSD7A.37_5082_180000_0.0087944_0.47156_0.023239.png
                gene_name: THSD7A
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 4 percent done.
THSD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
THSD7B   10000 perm   3 sec   (3741 perm/sec)   p_kst 1.432000e-01   p_cons 9.409000e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000174/THSD7B.24_4841_10000_0.1432_0.9409_0.385.png
                gene_name: THSD7B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
TIAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
Cons ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
KS ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
TIAM1   10000 perm   3 sec   (3741 perm/sec)   p_kst 5.352000e-01   p_cons 4.600000e-02   p_joint 1.770000e-01

Joint ci ratio: 6.921702e-02	ci left: 1.333957e-01	ci right 1.430098e-01	k: 2763	n:20000
Cons ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
KS ci ratio: 2.581915e-02	ci left: 5.284581e-01	ci right 5.423316e-01	k: 10708	n:20000
TIAM1   20000 perm   6 sec   (3435 perm/sec)   p_kst 5.354000e-01   p_cons 4.670000e-02   p_joint 1.381500e-01

Joint ci ratio: 5.889514e-02	ci left: 1.248643e-01	ci right 1.324745e-01	k: 3859	n:30000
Cons ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
KS ci ratio: 2.118080e-02	ci left: 5.274015e-01	ci right 5.387254e-01	k: 15992	n:30000
TIAM1   30000 perm   9 sec   (3318 perm/sec)   p_kst 5.330667e-01   p_cons 4.733333e-02   p_joint 1.286333e-01

Joint ci ratio: 4.162561e-02	ci left: 1.776840e-01	ci right 1.852623e-01	k: 7258	n:40000
Cons ci ratio: 8.803601e-02	ci left: 4.514222e-02	ci right 4.932383e-02	k: 1888	n:40000
KS ci ratio: 1.747015e-02	ci left: 5.523658e-01	ci right 5.621259e-01	k: 22290	n:40000
TIAM1   40000 perm   12 sec   (3244 perm/sec)   p_kst 5.572500e-01   p_cons 4.720000e-02   p_joint 1.814500e-01

Outputting figure to mutsig2_images.part000000000174/TIAM1.19_4876_40000_0.55725_0.0472_0.18145.png
                gene_name: TIAM1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 7 percent done.
THBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
KS ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
THBS2   10000 perm   2 sec   (4187 perm/sec)   p_kst 2.739000e-01   p_cons 3.830000e-02   p_joint 7.100000e-02

Joint ci ratio: 1.196902e-01	ci left: 4.784576e-02	ci right 5.398563e-02	k: 1017	n:20000
Cons ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
KS ci ratio: 4.590317e-02	ci left: 2.610270e-01	ci right 2.733408e-01	k: 5343	n:20000
THBS2   20000 perm   5 sec   (3868 perm/sec)   p_kst 2.671500e-01   p_cons 3.505000e-02   p_joint 5.085000e-02

Joint ci ratio: 8.420777e-02	ci left: 6.452293e-02	ci right 7.022787e-02	k: 2020	n:30000
Cons ci ratio: 1.193672e-01	ci left: 3.262511e-02	ci right 3.679896e-02	k: 1040	n:30000
KS ci ratio: 3.763360e-02	ci left: 2.605754e-01	ci right 2.706033e-01	k: 7967	n:30000
THBS2   30000 perm   8 sec   (3642 perm/sec)   p_kst 2.655667e-01   p_cons 3.466667e-02   p_joint 6.733333e-02

Joint ci ratio: 7.834505e-02	ci left: 5.658780e-02	ci right 6.122649e-02	k: 2355	n:40000
Cons ci ratio: 1.034527e-01	ci left: 3.285467e-02	ci right 3.646330e-02	k: 1385	n:40000
KS ci ratio: 3.232234e-02	ci left: 2.644847e-01	ci right 2.731989e-01	k: 10753	n:40000
THBS2   40000 perm   11 sec   (3558 perm/sec)   p_kst 2.688250e-01   p_cons 3.462500e-02   p_joint 5.887500e-02

Joint ci ratio: 6.462602e-02	ci left: 6.632068e-02	ci right 7.076957e-02	k: 3426	n:50000
Cons ci ratio: 8.869128e-02	ci left: 3.592994e-02	ci right 3.928402e-02	k: 1879	n:50000
KS ci ratio: 2.890927e-02	ci left: 2.649574e-01	ci right 2.727495e-01	k: 13442	n:50000
THBS2   50000 perm   15 sec   (3442 perm/sec)   p_kst 2.688400e-01   p_cons 3.758000e-02   p_joint 6.852000e-02

Outputting figure to mutsig2_images.part000000000174/THBS2.16_3603_50000_0.26884_0.03758_0.06852.png
                gene_name: THBS2
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 9 percent done.
THEMIS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.294424e-01	ci left: 7.853799e-02	ci right 8.950576e-02	k: 839	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
THEMIS   10000 perm   2 sec   (4893 perm/sec)   p_kst 1.456000e-01   p_cons 7.240000e-02   p_joint 8.390000e-02

Joint ci ratio: 1.028597e-01	ci left: 6.420742e-02	ci right 7.121890e-02	k: 1353	n:20000
Cons ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
KS ci ratio: 6.622928e-02	ci left: 1.440912e-01	ci right 1.540110e-01	k: 2980	n:20000
THEMIS   20000 perm   5 sec   (4440 perm/sec)   p_kst 1.490000e-01   p_cons 7.310000e-02   p_joint 6.765000e-02

Joint ci ratio: 5.998802e-02	ci left: 1.208497e-01	ci right 1.283565e-01	k: 3737	n:30000
Cons ci ratio: 7.648872e-02	ci left: 7.741266e-02	ci right 8.360220e-02	k: 2414	n:30000
KS ci ratio: 5.445245e-02	ci left: 1.432743e-01	ci right 1.513275e-01	k: 4418	n:30000
THEMIS   30000 perm   7 sec   (4256 perm/sec)   p_kst 1.472667e-01   p_cons 8.046667e-02   p_joint 1.245667e-01

Outputting figure to mutsig2_images.part000000000174/THEMIS.15_2071_30000_0.14727_0.080467_0.12457.png
                gene_name: THEMIS
               theta_stop: 0.076 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 11 percent done.
TGFBR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 3.360699e-03	ci left: 9.909413e-01	ci right 9.943623e-01	k: 9928	n:10000
KS ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
TGFBR3   10000 perm   2 sec   (4858 perm/sec)   p_kst 7.540000e-02   p_cons 9.928000e-01   p_joint 1.277000e-01

Joint ci ratio: 6.651798e-02	ci left: 1.430065e-01	ci right 1.528961e-01	k: 2958	n:20000
Cons ci ratio: 2.417329e-03	ci left: 9.912049e-01	ci right 9.936487e-01	k: 19850	n:20000
KS ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
TGFBR3   20000 perm   4 sec   (4475 perm/sec)   p_kst 7.340000e-02   p_cons 9.925000e-01   p_joint 1.479000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBR3.13_2620_20000_0.0734_0.9925_0.1479.png
                gene_name: TGFBR3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 12 percent done.
TGIF2LX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
Cons ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
KS ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
TGIF2LX   10000 perm   2 sec   (4963 perm/sec)   p_kst 2.805000e-01   p_cons 4.432000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000174/TGIF2LX.13_730_10000_0.2805_0.4432_0.3431.png
                gene_name: TGIF2LX
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 14 percent done.
TGM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.146657e-02	ci left: 7.609153e-01	ci right 7.775276e-01	k: 7693	n:10000
Cons ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
KS ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
TGM4   10000 perm   2 sec   (5180 perm/sec)   p_kst 4.883000e-01   p_cons 8.243000e-01   p_joint 7.693000e-01

Outputting figure to mutsig2_images.part000000000174/TGM4.11_2111_10000_0.4883_0.8243_0.7693.png
                gene_name: TGM4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 16 percent done.
THOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
THOC2   10000 perm   2 sec   (4076 perm/sec)   p_kst 3.543000e-01   p_cons 4.550000e-02   p_joint 2.259000e-01

Joint ci ratio: 5.994426e-02	ci left: 1.708434e-01	ci right 1.814509e-01	k: 3522	n:20000
Cons ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
KS ci ratio: 3.757574e-02	ci left: 3.457264e-01	ci right 3.590166e-01	k: 7047	n:20000
THOC2   20000 perm   5 sec   (3702 perm/sec)   p_kst 3.523500e-01   p_cons 4.595000e-02   p_joint 1.761000e-01

Joint ci ratio: 6.025532e-02	ci left: 1.198956e-01	ci right 1.273775e-01	k: 3708	n:30000
Cons ci ratio: 1.040174e-01	ci left: 4.284418e-02	ci right 4.757773e-02	k: 1355	n:30000
KS ci ratio: 3.040459e-02	ci left: 3.510775e-01	ci right 3.619503e-01	k: 10695	n:30000
THOC2   30000 perm   8 sec   (3551 perm/sec)   p_kst 3.565000e-01   p_cons 4.516667e-02   p_joint 1.236000e-01

Joint ci ratio: 5.229346e-02	ci left: 1.199446e-01	ci right 1.264102e-01	k: 4926	n:40000
Cons ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
KS ci ratio: 2.701990e-02	ci left: 3.400912e-01	ci right 3.494314e-01	k: 13790	n:40000
THOC2   40000 perm   12 sec   (3463 perm/sec)   p_kst 3.447500e-01   p_cons 4.500000e-02   p_joint 1.231500e-01

Outputting figure to mutsig2_images.part000000000174/THOC2.11_4934_40000_0.34475_0.045_0.12315.png
                gene_name: THOC2
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 18 percent done.
TIAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
Cons ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
KS ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
TIAM2   10000 perm   2 sec   (4343 perm/sec)   p_kst 2.550000e-01   p_cons 6.326000e-01   p_joint 3.827000e-01

Outputting figure to mutsig2_images.part000000000174/TIAM2.11_5202_10000_0.255_0.6326_0.3827.png
                gene_name: TIAM2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 19 percent done.
TGM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
Cons ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
KS ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
TGM6   10000 perm   2 sec   (4655 perm/sec)   p_kst 6.002000e-01   p_cons 9.268000e-01   p_joint 7.994000e-01

Outputting figure to mutsig2_images.part000000000174/TGM6.10_2173_10000_0.6002_0.9268_0.7994.png
                gene_name: TGM6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 21 percent done.
TIE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
Cons ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
KS ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
TIE1   10000 perm   2 sec   (4756 perm/sec)   p_kst 2.341000e-01   p_cons 4.400000e-02   p_joint 7.320000e-02

Joint ci ratio: 1.085607e-01	ci left: 5.786828e-02	ci right 6.455999e-02	k: 1223	n:20000
Cons ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
KS ci ratio: 4.844886e-02	ci left: 2.405889e-01	ci right 2.525849e-01	k: 4931	n:20000
TIE1   20000 perm   5 sec   (4330 perm/sec)   p_kst 2.465500e-01   p_cons 4.405000e-02   p_joint 6.115000e-02

Joint ci ratio: 7.889428e-02	ci left: 7.302581e-02	ci right 7.905660e-02	k: 2280	n:30000
Cons ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
KS ci ratio: 3.962955e-02	ci left: 2.410353e-01	ci right 2.508140e-01	k: 7377	n:30000
TIE1   30000 perm   7 sec   (4164 perm/sec)   p_kst 2.459000e-01   p_cons 4.286667e-02   p_joint 7.600000e-02

Joint ci ratio: 7.635038e-02	ci left: 5.945966e-02	ci right 6.420420e-02	k: 2472	n:40000
Cons ci ratio: 9.320256e-02	ci left: 4.037279e-02	ci right 4.434399e-02	k: 1693	n:40000
KS ci ratio: 3.437431e-02	ci left: 2.411144e-01	ci right 2.495726e-01	k: 9813	n:40000
TIE1   40000 perm   10 sec   (4044 perm/sec)   p_kst 2.453250e-01   p_cons 4.232500e-02   p_joint 6.180000e-02

Outputting figure to mutsig2_images.part000000000174/TIE1.10_3509_40000_0.24532_0.042325_0.0618.png
                gene_name: TIE1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 23 percent done.
TGFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
TGFB2   10000 perm   2 sec   (5492 perm/sec)   p_kst 8.110000e-02   p_cons 8.900000e-03   p_joint 1.100000e-02

Joint ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
Cons ci ratio: 2.993624e-01	ci left: 7.228280e-03	ci right 9.817657e-03	k: 169	n:20000
KS ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
TGFB2   20000 perm   4 sec   (4951 perm/sec)   p_kst 8.610000e-02   p_cons 8.450000e-03   p_joint 7.250000e-03

Joint ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
Cons ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
KS ci ratio: 7.384346e-02	ci left: 8.268711e-02	ci right 8.906003e-02	k: 2575	n:30000
TGFB2   30000 perm   6 sec   (4742 perm/sec)   p_kst 8.583333e-02   p_cons 8.400000e-03   p_joint 4.700000e-03

Joint ci ratio: 2.095193e-01	ci left: 7.765825e-03	ci right 9.606568e-03	k: 346	n:40000
Cons ci ratio: 2.168913e-01	ci left: 7.221300e-03	ci right 9.001222e-03	k: 323	n:40000
KS ci ratio: 6.486024e-02	ci left: 8.095459e-02	ci right 8.640603e-02	k: 3346	n:40000
TGFB2   40000 perm   9 sec   (4600 perm/sec)   p_kst 8.365000e-02   p_cons 8.075000e-03   p_joint 8.650000e-03

Joint ci ratio: 1.626742e-01	ci left: 1.054551e-02	ci right 1.243185e-02	k: 573	n:50000
Cons ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
KS ci ratio: 5.783017e-02	ci left: 8.172099e-02	ci right 8.660742e-02	k: 4207	n:50000
TGFB2   50000 perm   11 sec   (4486 perm/sec)   p_kst 8.414000e-02   p_cons 8.080000e-03   p_joint 1.146000e-02

Joint ci ratio: 1.365447e-01	ci left: 1.262407e-02	ci right 1.449009e-02	k: 812	n:60000
Cons ci ratio: 1.761803e-01	ci left: 7.462067e-03	ci right 8.919440e-03	k: 490	n:60000
KS ci ratio: 5.314629e-02	ci left: 8.091965e-02	ci right 8.535411e-02	k: 4987	n:60000
TGFB2   60000 perm   14 sec   (4385 perm/sec)   p_kst 8.311667e-02   p_cons 8.166667e-03   p_joint 1.353333e-02

Joint ci ratio: 9.304592e-02	ci left: 2.357677e-02	ci right 2.589143e-02	k: 1730	n:70000
Cons ci ratio: 1.597482e-01	ci left: 7.846939e-03	ci right 9.222838e-03	k: 596	n:70000
KS ci ratio: 4.930258e-02	ci left: 8.078282e-02	ci right 8.488041e-02	k: 5797	n:70000
TGFB2   70000 perm   16 sec   (4299 perm/sec)   p_kst 8.281429e-02   p_cons 8.514286e-03   p_joint 2.471429e-02

Joint ci ratio: 9.535536e-02	ci left: 1.970013e-02	ci right 2.168484e-02	k: 1654	n:80000
Cons ci ratio: 1.501300e-01	ci left: 7.815301e-03	ci right 9.095730e-03	k: 675	n:80000
KS ci ratio: 4.597587e-02	ci left: 8.138165e-02	ci right 8.522364e-02	k: 6663	n:80000
TGFB2   80000 perm   19 sec   (4221 perm/sec)   p_kst 8.328750e-02   p_cons 8.437500e-03   p_joint 2.067500e-02

Joint ci ratio: 9.724830e-02	ci left: 1.687025e-02	ci right 1.860548e-02	k: 1595	n:90000
Cons ci ratio: 1.426356e-01	ci left: 7.728324e-03	ci right 8.925914e-03	k: 748	n:90000
KS ci ratio: 4.336858e-02	ci left: 8.141453e-02	ci right 8.503461e-02	k: 7489	n:90000
TGFB2   90000 perm   22 sec   (4147 perm/sec)   p_kst 8.321111e-02   p_cons 8.311111e-03   p_joint 1.772222e-02

Joint ci ratio: 9.224023e-02	ci left: 1.692108e-02	ci right 1.856707e-02	k: 1773	n:100000
Cons ci ratio: 1.353344e-01	ci left: 7.756650e-03	ci right 8.892146e-03	k: 831	n:100000
KS ci ratio: 4.100409e-02	ci left: 8.202037e-02	ci right 8.546382e-02	k: 8373	n:100000
TGFB2   100000 perm   25 sec   (4079 perm/sec)   p_kst 8.373000e-02   p_cons 8.310000e-03   p_joint 1.773000e-02

Joint ci ratio: 9.516384e-02	ci left: 1.446749e-02	ci right 1.592187e-02	k: 1670	n:110000
Cons ci ratio: 1.300576e-01	ci left: 7.657927e-03	ci right 8.731882e-03	k: 900	n:110000
KS ci ratio: 3.913624e-02	ci left: 8.194374e-02	ci right 8.522371e-02	k: 9193	n:110000
TGFB2   110000 perm   27 sec   (4013 perm/sec)   p_kst 8.357273e-02   p_cons 8.181818e-03   p_joint 1.518182e-02

Joint ci ratio: 9.372887e-02	ci left: 1.369284e-02	ci right 1.504745e-02	k: 1723	n:120000
Cons ci ratio: 1.248998e-01	ci left: 7.632900e-03	ci right 8.657750e-03	k: 976	n:120000
KS ci ratio: 3.723126e-02	ci left: 8.299005e-02	ci right 8.614673e-02	k: 10147	n:120000
TGFB2   120000 perm   31 sec   (3917 perm/sec)   p_kst 8.455833e-02   p_cons 8.133333e-03   p_joint 1.435833e-02

Joint ci ratio: 9.245878e-02	ci left: 1.300748e-02	ci right 1.427589e-02	k: 1772	n:130000
Cons ci ratio: 1.210078e-01	ci left: 7.522895e-03	ci right 8.499242e-03	k: 1040	n:130000
KS ci ratio: 3.579318e-02	ci left: 8.295535e-02	ci right 8.598630e-02	k: 10980	n:130000
TGFB2   130000 perm   34 sec   (3851 perm/sec)   p_kst 8.446154e-02   p_cons 8.000000e-03   p_joint 1.363077e-02

Joint ci ratio: 9.006612e-02	ci left: 1.274836e-02	ci right 1.395764e-02	k: 1868	n:140000
Cons ci ratio: 1.167151e-01	ci left: 7.526126e-03	ci right 8.465852e-03	k: 1118	n:140000
KS ci ratio: 3.452577e-02	ci left: 8.285676e-02	ci right 8.577477e-02	k: 11803	n:140000
TGFB2   140000 perm   37 sec   (3789 perm/sec)   p_kst 8.430714e-02   p_cons 7.985714e-03   p_joint 1.334286e-02

Joint ci ratio: 1.069696e-01	ci left: 8.398441e-03	ci right 9.354021e-03	k: 1330	n:150000
Cons ci ratio: 1.189622e-01	ci left: 6.758947e-03	ci right 7.620267e-03	k: 1077	n:150000
KS ci ratio: 3.413344e-02	ci left: 7.943885e-02	ci right 8.220404e-02	k: 12122	n:150000
TGFB2   150000 perm   40 sec   (3730 perm/sec)   p_kst 8.081333e-02   p_cons 7.180000e-03   p_joint 8.866667e-03

Joint ci ratio: 1.042316e-01	ci left: 8.305547e-03	ci right 9.224886e-03	k: 1401	n:160000
Cons ci ratio: 1.158393e-01	ci left: 6.694421e-03	ci right 7.523590e-03	k: 1136	n:160000
KS ci ratio: 3.304846e-02	ci left: 7.948773e-02	ci right 8.216499e-02	k: 12931	n:160000
TGFB2   160000 perm   44 sec   (3675 perm/sec)   p_kst 8.081875e-02   p_cons 7.100000e-03   p_joint 8.756250e-03

Joint ci ratio: 1.017285e-01	ci left: 8.218126e-03	ci right 9.104635e-03	k: 1471	n:170000
Cons ci ratio: 1.120570e-01	ci left: 6.746389e-03	ci right 7.552909e-03	k: 1214	n:170000
KS ci ratio: 3.209508e-02	ci left: 7.937442e-02	ci right 8.196931e-02	k: 13713	n:170000
TGFB2   170000 perm   47 sec   (3625 perm/sec)   p_kst 8.066471e-02   p_cons 7.141176e-03   p_joint 8.652941e-03

Joint ci ratio: 1.000538e-01	ci left: 8.032293e-03	ci right 8.883652e-03	k: 1521	n:180000
Cons ci ratio: 1.095220e-01	ci left: 6.679468e-03	ci right 7.458757e-03	k: 1271	n:180000
KS ci ratio: 3.116480e-02	ci left: 7.953396e-02	ci right 8.205734e-02	k: 14542	n:180000
TGFB2   180000 perm   50 sec   (3582 perm/sec)   p_kst 8.078889e-02   p_cons 7.061111e-03   p_joint 8.450000e-03

Joint ci ratio: 9.755550e-02	ci left: 8.015052e-03	ci right 8.842157e-03	k: 1600	n:190000
Cons ci ratio: 1.065077e-01	ci left: 6.701752e-03	ci right 7.460772e-03	k: 1344	n:190000
KS ci ratio: 3.036475e-02	ci left: 7.941633e-02	ci right 8.187016e-02	k: 15321	n:190000
TGFB2   190000 perm   54 sec   (3538 perm/sec)   p_kst 8.063684e-02   p_cons 7.073684e-03   p_joint 8.421053e-03

Joint ci ratio: 9.517833e-02	ci left: 8.009537e-03	ci right 8.814809e-03	k: 1681	n:200000
Cons ci ratio: 1.035457e-01	ci left: 6.746429e-03	ci right 7.487965e-03	k: 1422	n:200000
KS ci ratio: 2.960131e-02	ci left: 7.942048e-02	ci right 8.181169e-02	k: 16122	n:200000
TGFB2   200000 perm   57 sec   (3494 perm/sec)   p_kst 8.061000e-02   p_cons 7.110000e-03   p_joint 8.405000e-03

Joint ci ratio: 9.026911e-02	ci left: 8.498063e-03	ci right 9.306057e-03	k: 1868	n:210000
Cons ci ratio: 1.009533e-01	ci left: 6.768544e-03	ci right 7.492780e-03	k: 1496	n:210000
KS ci ratio: 2.889178e-02	ci left: 7.942967e-02	ci right 8.176287e-02	k: 16924	n:210000
TGFB2   210000 perm   61 sec   (3455 perm/sec)   p_kst 8.059048e-02   p_cons 7.123810e-03   p_joint 8.895238e-03

Joint ci ratio: 8.992430e-02	ci left: 8.178372e-03	ci right 8.952842e-03	k: 1883	n:220000
Cons ci ratio: 9.864132e-02	ci left: 6.775556e-03	ci right 7.482978e-03	k: 1567	n:220000
KS ci ratio: 2.828477e-02	ci left: 7.915865e-02	ci right 8.143424e-02	k: 17664	n:220000
TGFB2   220000 perm   64 sec   (3415 perm/sec)   p_kst 8.029091e-02   p_cons 7.122727e-03   p_joint 8.559091e-03

Outputting figure to mutsig2_images.part000000000174/TGFB2.8_1361_220000_0.080291_0.0071227_0.0085591.png
                gene_name: TGFB2
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.0071 
      ci_cons_bounds_left: 0.0068 
     ci_cons_bounds_right: 0.0075 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0090 

Current progress: 25 percent done.
TGM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
Cons ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
KS ci ratio: 2.635936e-02	ci left: 6.794201e-01	ci right 6.976699e-01	k: 6886	n:10000
TGM7   10000 perm   2 sec   (5290 perm/sec)   p_kst 6.886000e-01   p_cons 9.940000e-02   p_joint 3.034000e-01

Joint ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
Cons ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
KS ci ratio: 1.866989e-02	ci left: 6.814264e-01	ci right 6.943189e-01	k: 13758	n:20000
TGM7   20000 perm   4 sec   (4789 perm/sec)   p_kst 6.879000e-01   p_cons 9.755000e-02   p_joint 2.616000e-01

Outputting figure to mutsig2_images.part000000000174/TGM7.8_2185_20000_0.6879_0.09755_0.2616.png
                gene_name: TGM7
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 26 percent done.
THADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
KS ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
THADA   10000 perm   3 sec   (3977 perm/sec)   p_kst 8.928000e-01   p_cons 8.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THADA.8_6010_10000_0.8928_0.8714_1.png
                gene_name: THADA
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
THRAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
Cons ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
KS ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
THRAP3   10000 perm   2 sec   (5102 perm/sec)   p_kst 5.152000e-01   p_cons 4.975000e-01   p_joint 6.718000e-01

Outputting figure to mutsig2_images.part000000000174/THRAP3.8_2908_10000_0.5152_0.4975_0.6718.png
                gene_name: THRAP3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 30 percent done.
TFRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
TFRC   10000 perm   2 sec   (4879 perm/sec)   p_kst 7.491000e-01   p_cons 8.073000e-01   p_joint 9.502000e-01

Outputting figure to mutsig2_images.part000000000174/TFRC.6_2355_10000_0.7491_0.8073_0.9502.png
                gene_name: TFRC
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 32 percent done.
THBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
Cons ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
KS ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
THBS3   10000 perm   2 sec   (4539 perm/sec)   p_kst 8.126000e-01   p_cons 2.124000e-01   p_joint 5.505000e-01

Outputting figure to mutsig2_images.part000000000174/THBS3.6_2963_10000_0.8126_0.2124_0.5505.png
                gene_name: THBS3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 33 percent done.
THSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
THSD4   10000 perm   2 sec   (5428 perm/sec)   p_kst 5.474000e-01   p_cons 7.060000e-01   p_joint 7.494000e-01

Outputting figure to mutsig2_images.part000000000174/THSD4.6_3125_10000_0.5474_0.706_0.7494.png
                gene_name: THSD4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 35 percent done.
TFPI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
TFPI2   10000 perm   2 sec   (5849 perm/sec)   p_kst 1.109000e-01   p_cons 8.120000e-02   p_joint 8.720000e-02

Joint ci ratio: 8.296989e-02	ci left: 9.621914e-02	ci right 1.045974e-01	k: 2007	n:20000
Cons ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
KS ci ratio: 7.601789e-02	ci left: 1.128713e-01	ci right 1.218402e-01	k: 2346	n:20000
TFPI2   20000 perm   4 sec   (5286 perm/sec)   p_kst 1.173000e-01   p_cons 8.100000e-02   p_joint 1.003500e-01

Outputting figure to mutsig2_images.part000000000174/TFPI2.5_728_20000_0.1173_0.081_0.10035.png
                gene_name: TFPI2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 37 percent done.
TH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
Cons ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
KS ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
TH1L   10000 perm   2 sec   (5419 perm/sec)   p_kst 5.930000e-02   p_cons 4.248000e-01   p_joint 1.292000e-01

Joint ci ratio: 9.651026e-02	ci left: 7.251086e-02	ci right 7.991291e-02	k: 1523	n:20000
Cons ci ratio: 3.262376e-02	ci left: 4.123487e-01	ci right 4.260748e-01	k: 8384	n:20000
KS ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
TH1L   20000 perm   4 sec   (4764 perm/sec)   p_kst 6.175000e-02   p_cons 4.192000e-01   p_joint 7.615000e-02

Joint ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
Cons ci ratio: 2.685984e-02	ci left: 4.095825e-01	ci right 4.207672e-01	k: 12455	n:30000
KS ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
TH1L   30000 perm   7 sec   (4401 perm/sec)   p_kst 5.836667e-02   p_cons 4.151667e-01   p_joint 7.393333e-02

Outputting figure to mutsig2_images.part000000000174/TH1L.5_1833_30000_0.058367_0.41517_0.073933.png
                gene_name: TH1L
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 39 percent done.
THBS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
KS ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
THBS4   10000 perm   2 sec   (5006 perm/sec)   p_kst 9.440000e-01   p_cons 8.015000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THBS4.5_2974_10000_0.944_0.8015_1.png
                gene_name: THBS4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
THNSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
THNSL2   10000 perm   2 sec   (5723 perm/sec)   p_kst 8.623000e-01   p_cons 8.580000e-02   p_joint 3.050000e-01

Joint ci ratio: 3.347227e-02	ci left: 3.999310e-01	ci right 4.135961e-01	k: 8135	n:20000
Cons ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
KS ci ratio: 1.114272e-02	ci left: 8.560266e-01	ci right 8.656682e-01	k: 17218	n:20000
THNSL2   20000 perm   4 sec   (5134 perm/sec)   p_kst 8.609000e-01   p_cons 8.720000e-02   p_joint 4.067500e-01

Outputting figure to mutsig2_images.part000000000174/THNSL2.5_1487_20000_0.8609_0.0872_0.40675.png
                gene_name: THNSL2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 42 percent done.
THRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
THRB   10000 perm   2 sec   (5385 perm/sec)   p_kst 6.055000e-01   p_cons 1.585000e-01   p_joint 7.243000e-01

Outputting figure to mutsig2_images.part000000000174/THRB.5_1418_10000_0.6055_0.1585_0.7243.png
                gene_name: THRB
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 44 percent done.
THUMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.161796e-02	ci left: 5.961424e-01	ci right 6.153959e-01	k: 6058	n:10000
KS ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
THUMPD2   10000 perm   2 sec   (5708 perm/sec)   p_kst 6.143000e-01   p_cons 6.058000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THUMPD2.5_1552_10000_0.6143_0.6058_1.png
                gene_name: THUMPD2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
THUMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
Cons ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
KS ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
THUMPD3   10000 perm   2 sec   (5389 perm/sec)   p_kst 4.356000e-01   p_cons 7.933000e-01   p_joint 6.272000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD3.5_1560_10000_0.4356_0.7933_0.6272.png
                gene_name: THUMPD3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 47 percent done.
TGOLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
KS ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
TGOLN2   10000 perm   2 sec   (6179 perm/sec)   p_kst 1.025000e-01   p_cons 5.383000e-01   p_joint 1.860000e-01

Joint ci ratio: 5.123003e-02	ci left: 2.206151e-01	ci right 2.322646e-01	k: 4528	n:20000
Cons ci ratio: 2.568453e-02	ci left: 5.310604e-01	ci right 5.449285e-01	k: 10760	n:20000
KS ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
TGOLN2   20000 perm   4 sec   (5488 perm/sec)   p_kst 1.051500e-01   p_cons 5.380000e-01   p_joint 2.264000e-01

Outputting figure to mutsig2_images.part000000000174/TGOLN2.4_1330_20000_0.10515_0.538_0.2264.png
                gene_name: TGOLN2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 49 percent done.
TGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
TGS1   10000 perm   2 sec   (5198 perm/sec)   p_kst 2.218000e-01   p_cons 1.700000e-02   p_joint 5.110000e-02

Joint ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
Cons ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
KS ci ratio: 5.131792e-02	ci left: 2.200206e-01	ci right 2.316592e-01	k: 4516	n:20000
TGS1   20000 perm   4 sec   (4701 perm/sec)   p_kst 2.258000e-01   p_cons 1.710000e-02   p_joint 3.975000e-02

Joint ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
Cons ci ratio: 1.660694e-01	ci left: 1.671749e-02	ci right 1.977682e-02	k: 546	n:30000
KS ci ratio: 4.123915e-02	ci left: 2.266704e-01	ci right 2.362483e-01	k: 6943	n:30000
TGS1   30000 perm   7 sec   (4507 perm/sec)   p_kst 2.314333e-01   p_cons 1.820000e-02   p_joint 4.563333e-02

Joint ci ratio: 7.968339e-02	ci left: 5.477224e-02	ci right 5.934233e-02	k: 2281	n:40000
Cons ci ratio: 1.560764e-01	ci left: 1.431219e-02	ci right 1.675887e-02	k: 620	n:40000
KS ci ratio: 3.570334e-02	ci left: 2.274233e-01	ci right 2.357157e-01	k: 9262	n:40000
TGS1   40000 perm   9 sec   (4377 perm/sec)   p_kst 2.315500e-01   p_cons 1.550000e-02   p_joint 5.702500e-02

Joint ci ratio: 7.711483e-02	ci left: 4.724189e-02	ci right 5.105067e-02	k: 2456	n:50000
Cons ci ratio: 1.354284e-01	ci left: 1.536288e-02	ci right 1.761376e-02	k: 823	n:50000
KS ci ratio: 3.196595e-02	ci left: 2.275103e-01	ci right 2.349210e-01	k: 11560	n:50000
TGS1   50000 perm   12 sec   (4272 perm/sec)   p_kst 2.312000e-01   p_cons 1.646000e-02   p_joint 4.912000e-02

Joint ci ratio: 8.287192e-02	ci left: 3.445821e-02	ci right 3.745356e-02	k: 2156	n:60000
Cons ci ratio: 1.236798e-01	ci left: 1.544733e-02	ci right 1.749983e-02	k: 987	n:60000
KS ci ratio: 2.918793e-02	ci left: 2.277484e-01	ci right 2.345110e-01	k: 13867	n:60000
TGS1   60000 perm   14 sec   (4188 perm/sec)   p_kst 2.311167e-01   p_cons 1.645000e-02   p_joint 3.593333e-02

Joint ci ratio: 8.843868e-02	ci left: 2.609133e-02	ci right 2.851950e-02	k: 1910	n:70000
Cons ci ratio: 1.146910e-01	ci left: 1.547207e-02	ci right 1.736832e-02	k: 1148	n:70000
KS ci ratio: 2.711689e-02	ci left: 2.267728e-01	ci right 2.330210e-01	k: 16092	n:70000
TGS1   70000 perm   17 sec   (4110 perm/sec)   p_kst 2.298857e-01   p_cons 1.640000e-02   p_joint 2.728571e-02

Joint ci ratio: 7.402843e-02	ci left: 3.260752e-02	ci right 3.512643e-02	k: 2708	n:80000
Cons ci ratio: 1.075397e-01	ci left: 1.545820e-02	ci right 1.722713e-02	k: 1306	n:80000
KS ci ratio: 2.536822e-02	ci left: 2.269381e-01	ci right 2.327815e-01	k: 18388	n:80000
TGS1   80000 perm   20 sec   (4050 perm/sec)   p_kst 2.298500e-01   p_cons 1.632500e-02   p_joint 3.385000e-02

Joint ci ratio: 6.582440e-02	ci left: 3.666181e-02	ci right 3.916809e-02	k: 3411	n:90000
Cons ci ratio: 1.023264e-01	ci left: 1.522281e-02	ci right 1.687526e-02	k: 1443	n:90000
KS ci ratio: 2.388713e-02	ci left: 2.275525e-01	ci right 2.330649e-01	k: 20727	n:90000
TGS1   90000 perm   23 sec   (3999 perm/sec)   p_kst 2.303000e-01   p_cons 1.603333e-02   p_joint 3.790000e-02

Joint ci ratio: 6.938597e-02	ci left: 2.985575e-02	ci right 3.201157e-02	k: 3092	n:100000
Cons ci ratio: 9.675249e-02	ci left: 1.536803e-02	ci right 1.694022e-02	k: 1614	n:100000
KS ci ratio: 2.263969e-02	ci left: 2.280320e-01	ci right 2.332636e-01	k: 23064	n:100000
TGS1   100000 perm   25 sec   (3935 perm/sec)   p_kst 2.306400e-01   p_cons 1.614000e-02   p_joint 3.092000e-02

Outputting figure to mutsig2_images.part000000000174/TGS1.4_2614_100000_0.23064_0.01614_0.03092.png
                gene_name: TGS1
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 51 percent done.
THBS1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
Cons ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
KS ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
THBS1   10000 perm   2 sec   (5238 perm/sec)   p_kst 5.406000e-01   p_cons 8.830000e-02   p_joint 5.449000e-01

Joint ci ratio: 2.503282e-02	ci left: 5.438243e-01	ci right 5.576609e-01	k: 11015	n:20000
Cons ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
KS ci ratio: 2.525363e-02	ci left: 5.394691e-01	ci right 5.533175e-01	k: 10928	n:20000
THBS1   20000 perm   4 sec   (4726 perm/sec)   p_kst 5.464000e-01   p_cons 9.700000e-02   p_joint 5.507500e-01

Outputting figure to mutsig2_images.part000000000174/THBS1.3_3597_20000_0.5464_0.097_0.55075.png
                gene_name: THBS1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
THSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
Cons ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
KS ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
THSD1   10000 perm   2 sec   (5381 perm/sec)   p_kst 2.823000e-01   p_cons 3.464000e-01   p_joint 5.200000e-01

Outputting figure to mutsig2_images.part000000000174/THSD1.4_2575_10000_0.2823_0.3464_0.52.png
                gene_name: THSD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 54 percent done.
TGFB1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
TGFB1I1   10000 perm   2 sec   (5919 perm/sec)   p_kst 1.939000e-01   p_cons 5.730000e-01   p_joint 4.485000e-01

Outputting figure to mutsig2_images.part000000000174/TGFB1I1.3_1430_10000_0.1939_0.573_0.4485.png
                gene_name: TGFB1I1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 56 percent done.
TGFBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
TGFBI   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.199000e-01   p_cons 2.468000e-01   p_joint 3.487000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBI.3_2120_10000_0.3199_0.2468_0.3487.png
                gene_name: TGFBI
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
TGFBRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
Cons ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
TGFBRAP1   10000 perm   2 sec   (5633 perm/sec)   p_kst 3.640000e-01   p_cons 3.412000e-01   p_joint 4.691000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBRAP1.3_2627_10000_0.364_0.3412_0.4691.png
                gene_name: TGFBRAP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
TGM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
KS ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
TGM2   10000 perm   2 sec   (5739 perm/sec)   p_kst 8.878000e-01   p_cons 2.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM2.3_2148_10000_0.8878_0.2633_1.png
                gene_name: TGM2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
TGM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
Cons ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
TGM3   10000 perm   2 sec   (5958 perm/sec)   p_kst 9.213000e-01   p_cons 3.407000e-01   p_joint 7.271000e-01

Outputting figure to mutsig2_images.part000000000174/TGM3.3_2134_10000_0.9213_0.3407_0.7271.png
                gene_name: TGM3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 63 percent done.
THAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
Cons ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
KS ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
THAP4   10000 perm   2 sec   (6130 perm/sec)   p_kst 1.810000e-01   p_cons 5.022000e-01   p_joint 3.030000e-01

Outputting figure to mutsig2_images.part000000000174/THAP4.3_1766_10000_0.181_0.5022_0.303.png
                gene_name: THAP4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 65 percent done.
THAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.648233e-02	ci left: 6.774048e-01	ci right 6.956864e-01	k: 6866	n:10000
KS ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
THAP6   10000 perm   2 sec   (6631 perm/sec)   p_kst 7.725000e-01   p_cons 6.866000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THAP6.3_685_10000_0.7725_0.6866_1.png
                gene_name: THAP6
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
THAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
Cons ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
KS ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
THAP9   10000 perm   2 sec   (5602 perm/sec)   p_kst 5.990000e-02   p_cons 2.084000e-01   p_joint 3.870000e-02

Joint ci ratio: 1.198142e-01	ci left: 4.774861e-02	ci right 5.388282e-02	k: 1015	n:20000
Cons ci ratio: 5.168013e-02	ci left: 2.175934e-01	ci right 2.291872e-01	k: 4467	n:20000
KS ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
THAP9   20000 perm   4 sec   (5012 perm/sec)   p_kst 5.665000e-02   p_cons 2.233500e-01   p_joint 5.075000e-02

Joint ci ratio: 7.911975e-02	ci left: 7.263311e-02	ci right 7.864938e-02	k: 2268	n:30000
Cons ci ratio: 4.212800e-02	ci left: 2.192262e-01	ci right 2.286939e-01	k: 6718	n:30000
KS ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
THAP9   30000 perm   6 sec   (4786 perm/sec)   p_kst 5.550000e-02   p_cons 2.239333e-01   p_joint 7.560000e-02

Outputting figure to mutsig2_images.part000000000174/THAP9.3_2732_30000_0.0555_0.22393_0.0756.png
                gene_name: THAP9
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 68 percent done.
THEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 1.907267e-02	ci left: 8.007500e-01	ci right 8.162698e-01	k: 8086	n:10000
THEG   10000 perm   1 sec   (6856 perm/sec)   p_kst 8.086000e-01   p_cons 5.433000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THEG.3_1172_10000_0.8086_0.5433_1.png
                gene_name: THEG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
THNSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.577655e-02	ci left: 5.356788e-01	ci right 5.552947e-01	k: 5455	n:10000
Cons ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
KS ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
THNSL1   10000 perm   2 sec   (5853 perm/sec)   p_kst 8.496000e-01   p_cons 7.560000e-02   p_joint 5.455000e-01

Joint ci ratio: 2.453846e-02	ci left: 5.536882e-01	ci right 5.674942e-01	k: 11212	n:20000
Cons ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
KS ci ratio: 1.171781e-02	ci left: 8.433541e-01	ci right 8.533444e-01	k: 16968	n:20000
THNSL1   20000 perm   4 sec   (5230 perm/sec)   p_kst 8.484000e-01   p_cons 7.640000e-02   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000174/THNSL1.3_2236_20000_0.8484_0.0764_0.5606.png
                gene_name: THNSL1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 72 percent done.
THOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
THOC5   10000 perm   2 sec   (5900 perm/sec)   p_kst 1.403000e-01   p_cons 2.275000e-01   p_joint 1.889000e-01

Outputting figure to mutsig2_images.part000000000174/THOC5.3_2128_10000_0.1403_0.2275_0.1889.png
                gene_name: THOC5
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 74 percent done.
TFIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
KS ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
TFIP11   10000 perm   2 sec   (5849 perm/sec)   p_kst 7.136000e-01   p_cons 4.459000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TFIP11.2_2562_10000_0.7136_0.4459_1.png
                gene_name: TFIP11
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
TFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
TFR2   10000 perm   2 sec   (6057 perm/sec)   p_kst 3.728000e-01   p_cons 3.610000e-02   p_joint 3.026000e-01

Joint ci ratio: 6.609905e-02	ci left: 1.445843e-01	ci right 1.545178e-01	k: 2990	n:20000
Cons ci ratio: 1.388934e-01	ci left: 3.563416e-02	ci right 4.100114e-02	k: 765	n:20000
KS ci ratio: 3.570090e-02	ci left: 3.693302e-01	ci right 3.828058e-01	k: 7521	n:20000
TFR2   20000 perm   4 sec   (5419 perm/sec)   p_kst 3.760500e-01   p_cons 3.825000e-02   p_joint 1.495000e-01

Joint ci ratio: 5.342152e-02	ci left: 1.480864e-01	ci right 1.562477e-01	k: 4564	n:30000
Cons ci ratio: 1.133555e-01	ci left: 3.615641e-02	ci right 4.053358e-02	k: 1149	n:30000
KS ci ratio: 2.914340e-02	ci left: 3.706806e-01	ci right 3.816768e-01	k: 11285	n:30000
TFR2   30000 perm   6 sec   (5163 perm/sec)   p_kst 3.761667e-01   p_cons 3.830000e-02   p_joint 1.521333e-01

Joint ci ratio: 4.298087e-02	ci left: 1.684371e-01	ci right 1.758606e-01	k: 6885	n:40000
Cons ci ratio: 9.745538e-02	ci left: 3.697735e-02	ci right 4.078997e-02	k: 1554	n:40000
KS ci ratio: 2.511434e-02	ci left: 3.737434e-01	ci right 3.832742e-01	k: 15140	n:40000
TFR2   40000 perm   8 sec   (5000 perm/sec)   p_kst 3.785000e-01   p_cons 3.885000e-02   p_joint 1.721250e-01

Outputting figure to mutsig2_images.part000000000174/TFR2.2_2478_40000_0.3785_0.03885_0.17213.png
                gene_name: TFR2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 77 percent done.
TGDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
KS ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
TGDS   10000 perm   2 sec   (6574 perm/sec)   p_kst 4.845000e-01   p_cons 9.236000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGDS.2_1101_10000_0.4845_0.9236_1.png
                gene_name: TGDS
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
TGFB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
Cons ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
KS ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
TGFB1   10000 perm   2 sec   (6570 perm/sec)   p_kst 8.098000e-01   p_cons 3.830000e-02   p_joint 1.724000e-01

Joint ci ratio: 5.056649e-02	ci left: 2.251732e-01	ci right 2.369051e-01	k: 4620	n:20000
Cons ci ratio: 1.350876e-01	ci left: 3.766484e-02	ci right 4.316980e-02	k: 807	n:20000
KS ci ratio: 1.348826e-02	ci left: 8.030276e-01	ci right 8.139826e-01	k: 16171	n:20000
TGFB1   20000 perm   3 sec   (5805 perm/sec)   p_kst 8.085500e-01   p_cons 4.035000e-02   p_joint 2.310000e-01

Joint ci ratio: 2.614270e-02	ci left: 4.227576e-01	ci right 4.339896e-01	k: 12851	n:30000
Cons ci ratio: 1.090398e-01	ci left: 3.904373e-02	ci right 4.357898e-02	k: 1238	n:30000
KS ci ratio: 1.093175e-02	ci left: 8.063549e-01	ci right 8.152515e-01	k: 24325	n:30000
TGFB1   30000 perm   5 sec   (5501 perm/sec)   p_kst 8.108333e-01   p_cons 4.126667e-02   p_joint 4.283667e-01

Joint ci ratio: 3.069780e-02	ci left: 2.851330e-01	ci right 2.940475e-01	k: 11583	n:40000
Cons ci ratio: 9.446145e-02	ci left: 3.932200e-02	ci right 4.324495e-02	k: 1650	n:40000
KS ci ratio: 9.433428e-03	ci left: 8.080604e-01	ci right 8.157443e-01	k: 32477	n:40000
TGFB1   40000 perm   8 sec   (5319 perm/sec)   p_kst 8.119250e-01   p_cons 4.125000e-02   p_joint 2.895750e-01

Outputting figure to mutsig2_images.part000000000174/TGFB1.2_1201_40000_0.81193_0.04125_0.28958.png
                gene_name: TGFB1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 81 percent done.
TGFBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.416248e-02	ci left: 2.629989e-01	ci right 2.805343e-01	k: 2717	n:10000
KS ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
TGFBR1   10000 perm   2 sec   (6633 perm/sec)   p_kst 4.192000e-01   p_cons 2.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGFBR1.2_1548_10000_0.4192_0.2717_1.png
                gene_name: TGFBR1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
TGFBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
KS ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
TGFBR2   10000 perm   2 sec   (6271 perm/sec)   p_kst 9.634000e-01   p_cons 1.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGFBR2.2_1811_10000_0.9634_0.1588_1.png
                gene_name: TGFBR2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
TGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
KS ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
TGM5   10000 perm   2 sec   (6091 perm/sec)   p_kst 8.318000e-01   p_cons 6.272000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM5.2_2215_10000_0.8318_0.6272_1.png
                gene_name: TGM5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
TH   10000 perm   2 sec   (6593 perm/sec)   p_kst 8.082000e-01   p_cons 2.157000e-01   p_joint 5.514000e-01

Outputting figure to mutsig2_images.part000000000174/TH.2_1643_10000_0.8082_0.2157_0.5514.png
                gene_name: TH
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 88 percent done.
THAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
Cons ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
THAP5   10000 perm   2 sec   (6585 perm/sec)   p_kst 1.735000e-01   p_cons 7.107000e-01   p_joint 8.754000e-01

Outputting figure to mutsig2_images.part000000000174/THAP5.2_1200_10000_0.1735_0.7107_0.8754.png
                gene_name: THAP5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 89 percent done.
THEM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
Cons ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
KS ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
THEM5   10000 perm   1 sec   (6837 perm/sec)   p_kst 8.114000e-01   p_cons 6.241000e-01   p_joint 9.311000e-01

Outputting figure to mutsig2_images.part000000000174/THEM5.2_768_10000_0.8114_0.6241_0.9311.png
                gene_name: THEM5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
THG1L
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 93 percent done.
THOC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.600967e-02	ci left: 6.851647e-01	ci right 7.033220e-01	k: 6943	n:10000
Cons ci ratio: 1.112701e-02	ci left: 9.201785e-01	ci right 9.305721e-01	k: 9255	n:10000
KS ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
THOC6   10000 perm   1 sec   (6890 perm/sec)   p_kst 4.204000e-01   p_cons 9.255000e-01   p_joint 6.943000e-01

Outputting figure to mutsig2_images.part000000000174/THOC6.2_1078_10000_0.4204_0.9255_0.6943.png
                gene_name: THOC6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 95 percent done.
THOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 3.474760e-03	ci left: 9.903856e-01	ci right 9.939186e-01	k: 9923	n:10000
THOP1   10000 perm   2 sec   (6133 perm/sec)   p_kst 9.923000e-01   p_cons 6.226000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THOP1.2_2122_10000_0.9923_0.6226_1.png
                gene_name: THOP1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
THUMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
Cons ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
KS ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
THUMPD1   10000 perm   2 sec   (6637 perm/sec)   p_kst 9.920000e-02   p_cons 4.721000e-01   p_joint 2.806000e-01

Joint ci ratio: 2.080606e-02	ci left: 6.329011e-01	ci right 6.462583e-01	k: 12792	n:20000
Cons ci ratio: 2.930271e-02	ci left: 4.652607e-01	ci right 4.791474e-01	k: 9444	n:20000
KS ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
THUMPD1   20000 perm   3 sec   (5839 perm/sec)   p_kst 1.011500e-01   p_cons 4.722000e-01   p_joint 6.396000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD1.2_1078_20000_0.10115_0.4722_0.6396.png
                gene_name: THUMPD1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 98 percent done.
TIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
KS ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
TIA1   10000 perm   2 sec   (6578 perm/sec)   p_kst 9.810000e-01   p_cons 3.910000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TIA1.2_1213_10000_0.981_0.391_1.png
                gene_name: TIA1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000174
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 174 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 4422615: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000175> was used as the working directory.
Started at Wed Oct 24 18:09:14 2012
Results reported at Wed Oct 24 18:17:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000175.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000175.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 175  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000175.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    542.64 sec.
    Max Memory :      5324 MB
    Max Swap   :      7645 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
175
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 175
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 175: processing genes 15743 - 15832
Calculating significance of each gene.
Using projection method.
15743	TIFAB	1.258387e-02
15744	TIGD2	7.027836e-01
15745	TIGD3	8.679719e-01
15746	TIGD4	2.736037e-01
15747	TIGD5	1
15748	TIGD6	1
15749	TIGD7	5.560402e-01
15750	TIGIT	4.361873e-01
15751	TIMD4	4.129169e-02
15752	TIMELESS	9.988764e-01
15753	TIMM10	1
15754	TIMM13	1
15755	TIMM16	1
15756	TIMM17A	4.331201e-01
15757	TIMM17B	1.571311e-01
15758	TIMM22	1
15759	TIMM23	1
15760	TIMM44	1
15761	TIMM50	9.180164e-01
15762	TIMM8A	2.139507e-01
15763	TIMM8B	1
15764	TIMM9	1
15765	TIMP1	7.403228e-01
15766	TIMP2	1
15767	TIMP3	1
15768	TIMP4	6.727555e-01
In gene TINAG the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 1475    n = 1	mu =   3.01e-07
15769	TINAG	1.230190e-03
15770	TINAGL1	8.898898e-01
15771	TINF2	7.886066e-01
15772	TIPARP	8.809153e-01
15773	TIPIN	1
15774	TIPRL	1
15775	TIRAP	1
15776	TJAP1	7.190856e-01
15777	TJP1	1
15778	TJP2	9.913313e-01
15779	TJP3	9.947523e-01
15780	TK1	1
15781	TK2	6.396408e-01
15782	TKT	9.581221e-01
15783	TKTL1	1.697522e-01
15784	TKTL2	7.930894e-04
15785	TLCD1	6.212582e-01
15786	TLE1	9.771551e-01
15787	TLE2	1
15788	TLE3	8.513598e-01
15789	TLE4	9.781969e-01
15790	TLE6	9.179672e-01
15791	TLK1	5.897137e-01
15792	TLK2	2.767068e-01
15793	TLL1	1.432600e-02
15794	TLL2	9.859911e-01
15795	TLN1	9.972112e-01
15796	TLN2	8.401557e-01
15797	TLR1	6.483623e-01
In gene TLR10 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 2440    n = 1	mu =   9.71e-07
15798	TLR10	6.669388e-01
15799	TLR2	1
15800	TLR3	1
15801	TLR4	1.390302e-03
15802	TLR5	9.604084e-01
15803	TLR6	1.286034e-01
15804	TLR7	8.735678e-01
15805	TLR8	9.872535e-01
15806	TLR9	6.399963e-01
15807	TLX1	6.113911e-01
15808	TLX1NB	1
15809	TLX2	1
15810	TLX3	6.067109e-01
15811	TM2D1	2.645540e-01
15812	TM2D2	2.573844e-01
15813	TM2D3	2.440999e-01
15814	TM4SF1	2.319094e-01
15815	TM4SF18	1
15816	TM4SF19	5.003404e-01
15817	TM4SF20	4.818153e-02
15818	TM4SF4	1
15819	TM4SF5	5.681417e-01
15820	TM6SF1	7.353450e-01
15821	TM6SF2	8.688176e-01
15822	TM7SF2	5.379549e-01
15823	TM7SF3	6.293616e-01
15824	TM7SF4	7.059404e-01
15825	TM9SF1	6.367117e-01
15826	TM9SF2	6.857822e-01
15827	TM9SF3	1
15828	TM9SF4	8.684184e-01
15829	TMBIM1	1
15830	TMBIM4	1
15831	TMBIM6	1
15832	TMC1	6.182213e-01
Done

Running MutSig 2:
Scatter job 175: processing genes 15743 - 15832
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TLR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
KS ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
TLR4   10000 perm   2 sec   (4036 perm/sec)   p_kst 8.549000e-01   p_cons 3.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLR4.31_2532_10000_0.8549_0.3985_1.png
                gene_name: TLR4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
TLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
Cons ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
TLL1   10000 perm   2 sec   (4235 perm/sec)   p_kst 5.501000e-01   p_cons 4.762000e-01   p_joint 7.160000e-01

Outputting figure to mutsig2_images.part000000000175/TLL1.17_3126_10000_0.5501_0.4762_0.716.png
                gene_name: TLL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 4 percent done.
TLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.979698e-02	ci left: 1.865851e-01	ci right 2.021934e-01	k: 1943	n:10000
Cons ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KS ci ratio: 2.220336e-02	ci left: 7.485708e-01	ci right 7.654792e-01	k: 7571	n:10000
TLN2   10000 perm   3 sec   (3519 perm/sec)   p_kst 7.571000e-01   p_cons 2.160000e-02   p_joint 1.943000e-01

Joint ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
Cons ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
KS ci ratio: 1.588799e-02	ci left: 7.466592e-01	ci right 7.586673e-01	k: 15054	n:20000
TLN2   20000 perm   6 sec   (3258 perm/sec)   p_kst 7.527000e-01   p_cons 1.635000e-02   p_joint 6.465000e-02

Joint ci ratio: 8.080810e-02	ci left: 6.978673e-02	ci right 7.569634e-02	k: 2181	n:30000
Cons ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
KS ci ratio: 1.311421e-02	ci left: 7.436839e-01	ci right 7.535345e-01	k: 22459	n:30000
TLN2   30000 perm   9 sec   (3166 perm/sec)   p_kst 7.486333e-01   p_cons 1.453333e-02   p_joint 7.270000e-02

Joint ci ratio: 6.797857e-02	ci left: 7.413503e-02	ci right 7.937661e-02	k: 3069	n:40000
Cons ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
KS ci ratio: 1.048509e-02	ci left: 7.733914e-01	ci right 7.815682e-01	k: 31100	n:40000
TLN2   40000 perm   13 sec   (3096 perm/sec)   p_kst 7.775000e-01   p_cons 1.392500e-02   p_joint 7.672500e-02

Joint ci ratio: 6.415497e-02	ci left: 6.724662e-02	ci right 7.172352e-02	k: 3473	n:50000
Cons ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
KS ci ratio: 9.610948e-03	ci left: 7.651796e-01	ci right 7.725892e-01	k: 38445	n:50000
TLN2   50000 perm   16 sec   (3043 perm/sec)   p_kst 7.689000e-01   p_cons 1.406000e-02   p_joint 6.946000e-02

Joint ci ratio: 5.142782e-02	ci left: 8.600840e-02	ci right 9.056485e-02	k: 5296	n:60000
Cons ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
KS ci ratio: 8.782606e-03	ci left: 7.651373e-01	ci right 7.719034e-01	k: 46112	n:60000
TLN2   60000 perm   20 sec   (2998 perm/sec)   p_kst 7.685333e-01   p_cons 2.021667e-02   p_joint 8.826667e-02

Joint ci ratio: 4.530917e-02	ci left: 9.440706e-02	ci right 9.879787e-02	k: 6761	n:70000
Cons ci ratio: 1.035995e-01	ci left: 1.900352e-02	ci right 2.109368e-02	k: 1402	n:70000
KS ci ratio: 8.133833e-03	ci left: 7.652710e-01	ci right 7.715353e-01	k: 53789	n:70000
TLN2   70000 perm   24 sec   (2956 perm/sec)   p_kst 7.684143e-01   p_cons 2.002857e-02   p_joint 9.658571e-02

Joint ci ratio: 4.218977e-02	ci left: 9.534138e-02	ci right 9.946287e-02	k: 7791	n:80000
Cons ci ratio: 9.710741e-02	ci left: 1.899224e-02	ci right 2.094279e-02	k: 1596	n:80000
KS ci ratio: 7.611214e-03	ci left: 7.653478e-01	ci right 7.712077e-01	k: 61463	n:80000
TLN2   80000 perm   27 sec   (2915 perm/sec)   p_kst 7.682875e-01   p_cons 1.995000e-02   p_joint 9.738750e-02

Outputting figure to mutsig2_images.part000000000175/TLN2.15_7853_80000_0.76829_0.01995_0.097388.png
                gene_name: TLN2
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.099 

Current progress: 6 percent done.
TLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
Cons ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
KS ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
TLN1   10000 perm   3 sec   (3511 perm/sec)   p_kst 4.210000e-02   p_cons 2.596000e-01   p_joint 6.950000e-02

Joint ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
Cons ci ratio: 4.826055e-02	ci left: 2.420269e-01	ci right 2.540464e-01	k: 4960	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
TLN1   20000 perm   6 sec   (3261 perm/sec)   p_kst 4.090000e-02   p_cons 2.480000e-01   p_joint 5.665000e-02

Joint ci ratio: 1.186605e-01	ci left: 3.301359e-02	ci right 3.721040e-02	k: 1052	n:30000
Cons ci ratio: 3.949821e-02	ci left: 2.422603e-01	ci right 2.520554e-01	k: 7414	n:30000
KS ci ratio: 1.095481e-01	ci left: 3.868669e-02	ci right 4.320276e-02	k: 1227	n:30000
TLN1   30000 perm   10 sec   (3152 perm/sec)   p_kst 4.090000e-02   p_cons 2.471333e-01   p_joint 3.506667e-02

Joint ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
Cons ci ratio: 3.545930e-02	ci left: 2.298580e-01	ci right 2.381807e-01	k: 9360	n:40000
KS ci ratio: 9.576977e-02	ci left: 3.827156e-02	ci right 4.214555e-02	k: 1607	n:40000
TLN1   40000 perm   13 sec   (3087 perm/sec)   p_kst 4.017500e-02   p_cons 2.340000e-01   p_joint 3.052500e-02

Joint ci ratio: 7.893955e-02	ci left: 4.514166e-02	ci right 4.887116e-02	k: 2349	n:50000
Cons ci ratio: 3.187273e-02	ci left: 2.285444e-01	ci right 2.359667e-01	k: 11612	n:50000
KS ci ratio: 8.312765e-02	ci left: 4.080723e-02	ci right 4.436613e-02	k: 2128	n:50000
TLN1   50000 perm   16 sec   (3039 perm/sec)   p_kst 4.256000e-02   p_cons 2.322400e-01   p_joint 4.698000e-02

Outputting figure to mutsig2_images.part000000000175/TLN1.13_7850_50000_0.04256_0.23224_0.04698.png
                gene_name: TLN1
               theta_stop: 0.083 
                    nperm: 50000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 8 percent done.
TKTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
TKTL2   10000 perm   2 sec   (5096 perm/sec)   p_kst 3.872000e-01   p_cons 5.586000e-01   p_joint 6.245000e-01

Outputting figure to mutsig2_images.part000000000175/TKTL2.12_1885_10000_0.3872_0.5586_0.6245.png
                gene_name: TKTL2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 10 percent done.
TLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
Cons ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
TLL2   10000 perm   2 sec   (4523 perm/sec)   p_kst 5.900000e-02   p_cons 7.403000e-01   p_joint 1.646000e-01

Joint ci ratio: 7.411652e-02	ci left: 1.181338e-01	ci right 1.272762e-01	k: 2453	n:20000
Cons ci ratio: 1.637660e-02	ci left: 7.351207e-01	ci right 7.473091e-01	k: 14825	n:20000
KS ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
TLL2   20000 perm   5 sec   (4138 perm/sec)   p_kst 6.150000e-02   p_cons 7.412500e-01   p_joint 1.226500e-01

Joint ci ratio: 6.296886e-02	ci left: 1.107861e-01	ci right 1.180221e-01	k: 3431	n:30000
Cons ci ratio: 1.338485e-02	ci left: 7.358687e-01	ci right 7.458180e-01	k: 22226	n:30000
KS ci ratio: 8.853736e-02	ci left: 5.861147e-02	ci right 6.407386e-02	k: 1839	n:30000
TLL2   30000 perm   8 sec   (3981 perm/sec)   p_kst 6.130000e-02   p_cons 7.408667e-01   p_joint 1.143667e-01

Outputting figure to mutsig2_images.part000000000175/TLL2.12_3132_30000_0.0613_0.74087_0.11437.png
                gene_name: TLL2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 12 percent done.
TIMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
Cons ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
KS ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
TIMD4   10000 perm   2 sec   (5327 perm/sec)   p_kst 1.540000e-01   p_cons 8.118000e-01   p_joint 3.287000e-01

Outputting figure to mutsig2_images.part000000000175/TIMD4.10_1173_10000_0.154_0.8118_0.3287.png
                gene_name: TIMD4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 14 percent done.
TJP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
Cons ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
KS ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
TJP1   10000 perm   2 sec   (4369 perm/sec)   p_kst 6.496000e-01   p_cons 5.072000e-01   p_joint 7.538000e-01

Outputting figure to mutsig2_images.part000000000175/TJP1.10_5359_10000_0.6496_0.5072_0.7538.png
                gene_name: TJP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 16 percent done.
TKTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
Cons ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
KS ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
TKTL1   10000 perm   2 sec   (4826 perm/sec)   p_kst 4.498000e-01   p_cons 9.457000e-01   p_joint 6.330000e-01

Outputting figure to mutsig2_images.part000000000175/TKTL1.10_1843_10000_0.4498_0.9457_0.633.png
                gene_name: TKTL1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 18 percent done.
TINAG
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
KS ci ratio: 1.257878e-02	ci left: 9.008303e-01	ci right 9.123316e-01	k: 9067	n:10000
TINAG   10000 perm   2 sec   (5079 perm/sec)   p_kst 9.067000e-01   p_cons 7.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TINAG.7_1475_10000_0.9067_0.7896_1.png
                gene_name: TINAG
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
TLR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 3.204321e-02	ci left: 5.897180e-01	ci right 6.090241e-01	k: 5994	n:10000
KS ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
TLR7   10000 perm   2 sec   (5188 perm/sec)   p_kst 1.250000e-02   p_cons 5.994000e-01   p_joint 7.860000e-02

Joint ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
Cons ci ratio: 2.310296e-02	ci left: 5.831961e-01	ci right 5.968777e-01	k: 11801	n:20000
KS ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
TLR7   20000 perm   4 sec   (4691 perm/sec)   p_kst 1.325000e-02   p_cons 5.900500e-01   p_joint 4.350000e-02

Joint ci ratio: 1.219389e-01	ci left: 3.126601e-02	ci right 3.535836e-02	k: 998	n:30000
Cons ci ratio: 1.880996e-02	ci left: 5.858455e-01	ci right 5.970034e-01	k: 17743	n:30000
KS ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
TLR7   30000 perm   7 sec   (4482 perm/sec)   p_kst 1.333333e-02   p_cons 5.914333e-01   p_joint 3.326667e-02

Joint ci ratio: 1.160673e-01	ci left: 2.611359e-02	ci right 2.935546e-02	k: 1108	n:40000
Cons ci ratio: 1.623141e-02	ci left: 5.883418e-01	ci right 5.979947e-01	k: 23727	n:40000
KS ci ratio: 1.659942e-01	ci left: 1.260773e-02	ci right 1.491366e-02	k: 549	n:40000
TLR7   40000 perm   9 sec   (4363 perm/sec)   p_kst 1.372500e-02   p_cons 5.931750e-01   p_joint 2.770000e-02

Joint ci ratio: 9.358543e-02	ci left: 3.231130e-02	ci right 3.550311e-02	k: 1694	n:50000
Cons ci ratio: 1.404190e-02	ci left: 6.048669e-01	ci right 6.134405e-01	k: 30458	n:50000
KS ci ratio: 1.504233e-01	ci left: 1.239124e-02	ci right 1.442583e-02	k: 669	n:50000
TLR7   50000 perm   12 sec   (4261 perm/sec)   p_kst 1.338000e-02   p_cons 6.091600e-01   p_joint 3.388000e-02

Joint ci ratio: 1.024915e-01	ci left: 2.257886e-02	ci right 2.503417e-02	k: 1427	n:60000
Cons ci ratio: 1.304648e-02	ci left: 5.968015e-01	ci right 6.046554e-01	k: 36044	n:60000
KS ci ratio: 1.366299e-01	ci left: 1.260796e-02	ci right 1.447286e-02	k: 811	n:60000
TLR7   60000 perm   14 sec   (4178 perm/sec)   p_kst 1.351667e-02   p_cons 6.007333e-01   p_joint 2.378333e-02

Joint ci ratio: 8.827261e-02	ci left: 2.618918e-02	ci right 2.862164e-02	k: 1917	n:70000
Cons ci ratio: 1.208892e-02	ci left: 5.966887e-01	ci right 6.039601e-01	k: 42023	n:70000
KS ci ratio: 1.264498e-01	ci left: 1.268585e-02	ci right 1.441197e-02	k: 947	n:70000
TLR7   70000 perm   17 sec   (4105 perm/sec)   p_kst 1.352857e-02   p_cons 6.003286e-01   p_joint 2.738571e-02

Joint ci ratio: 7.966642e-02	ci left: 2.820350e-02	ci right 3.055580e-02	k: 2349	n:80000
Cons ci ratio: 1.129647e-02	ci left: 5.974216e-01	ci right 6.042211e-01	k: 48066	n:80000
KS ci ratio: 1.188082e-01	ci left: 1.262681e-02	ci right 1.423376e-02	k: 1073	n:80000
TLR7   80000 perm   20 sec   (4029 perm/sec)   p_kst 1.341250e-02   p_cons 6.008250e-01   p_joint 2.936250e-02

Joint ci ratio: 7.241357e-02	ci left: 3.039027e-02	ci right 3.268449e-02	k: 2837	n:90000
Cons ci ratio: 1.066111e-02	ci left: 5.971355e-01	ci right 6.035469e-01	k: 54031	n:90000
KS ci ratio: 1.131218e-01	ci left: 1.242132e-02	ci right 1.392141e-02	k: 1184	n:90000
TLR7   90000 perm   23 sec   (3963 perm/sec)   p_kst 1.315556e-02   p_cons 6.003444e-01   p_joint 3.152222e-02

Joint ci ratio: 7.034214e-02	ci left: 2.905948e-02	ci right 3.118789e-02	k: 3011	n:100000
Cons ci ratio: 1.010906e-02	ci left: 5.975365e-01	ci right 6.036177e-01	k: 60058	n:100000
KS ci ratio: 1.073031e-01	ci left: 1.246283e-02	ci right 1.388561e-02	k: 1316	n:100000
TLR7   100000 perm   26 sec   (3900 perm/sec)   p_kst 1.316000e-02   p_cons 6.005800e-01   p_joint 3.011000e-02

Joint ci ratio: 6.717531e-02	ci left: 2.901766e-02	ci right 3.104358e-02	k: 3302	n:110000
Cons ci ratio: 9.644248e-03	ci left: 5.973981e-01	ci right 6.031966e-01	k: 66033	n:110000
KS ci ratio: 1.024063e-01	ci left: 1.247183e-02	ci right 1.382675e-02	k: 1445	n:110000
TLR7   110000 perm   29 sec   (3841 perm/sec)   p_kst 1.313636e-02   p_cons 6.003000e-01   p_joint 3.001818e-02

Joint ci ratio: 6.535374e-02	ci left: 2.815620e-02	ci right 3.006664e-02	k: 3492	n:120000
Cons ci ratio: 9.224375e-03	ci left: 5.980059e-01	ci right 6.035559e-01	k: 72094	n:120000
KS ci ratio: 9.780981e-02	ci left: 1.256188e-02	ci right 1.386181e-02	k: 1584	n:120000
TLR7   120000 perm   32 sec   (3787 perm/sec)   p_kst 1.320000e-02   p_cons 6.007833e-01   p_joint 2.910000e-02

Outputting figure to mutsig2_images.part000000000175/TLR7.8_3158_120000_0.0132_0.60078_0.0291.png
                gene_name: TLR7
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 22 percent done.
TM7SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
Cons ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
KS ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
TM7SF4   10000 perm   2 sec   (5360 perm/sec)   p_kst 4.093000e-01   p_cons 4.478000e-01   p_joint 4.506000e-01

Outputting figure to mutsig2_images.part000000000175/TM7SF4.8_1425_10000_0.4093_0.4478_0.4506.png
                gene_name: TM7SF4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 24 percent done.
TLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
Cons ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
KS ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
TLK1   10000 perm   2 sec   (4762 perm/sec)   p_kst 5.779000e-01   p_cons 2.715000e-01   p_joint 5.643000e-01

Outputting figure to mutsig2_images.part000000000175/TLK1.7_2431_10000_0.5779_0.2715_0.5643.png
                gene_name: TLK1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 27 percent done.
TMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
Cons ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
KS ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
TMC1   10000 perm   2 sec   (5554 perm/sec)   p_kst 3.104000e-01   p_cons 2.710000e-01   p_joint 3.037000e-01

Outputting figure to mutsig2_images.part000000000175/TMC1.7_2363_10000_0.3104_0.271_0.3037.png
                gene_name: TMC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 29 percent done.
TLR10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
Cons ci ratio: 4.125455e-02	ci left: 4.645717e-01	ci right 4.842432e-01	k: 4744	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
TLR10   10000 perm   2 sec   (5261 perm/sec)   p_kst 6.460000e-01   p_cons 4.744000e-01   p_joint 8.029000e-01

Outputting figure to mutsig2_images.part000000000175/TLR10.6_2440_10000_0.646_0.4744_0.8029.png
                gene_name: TLR10
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 31 percent done.
TLR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
Cons ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
TLR6   10000 perm   2 sec   (5123 perm/sec)   p_kst 6.785000e-01   p_cons 8.900000e-01   p_joint 8.385000e-01

Outputting figure to mutsig2_images.part000000000175/TLR6.6_2395_10000_0.6785_0.89_0.8385.png
                gene_name: TLR6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 33 percent done.
TLR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
Cons ci ratio: 5.044745e-03	ci left: 9.811299e-01	ci right 9.861827e-01	k: 9838	n:10000
KS ci ratio: 2.666089e-02	ci left: 6.744830e-01	ci right 6.928099e-01	k: 6837	n:10000
TLR8   10000 perm   2 sec   (5084 perm/sec)   p_kst 6.837000e-01   p_cons 9.838000e-01   p_joint 8.011000e-01

Outputting figure to mutsig2_images.part000000000175/TLR8.6_3134_10000_0.6837_0.9838_0.8011.png
                gene_name: TLR8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 35 percent done.
TLR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
Cons ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
KS ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
TLR9   10000 perm   2 sec   (5107 perm/sec)   p_kst 2.070000e-01   p_cons 7.526000e-01   p_joint 5.149000e-01

Outputting figure to mutsig2_images.part000000000175/TLR9.6_3107_10000_0.207_0.7526_0.5149.png
                gene_name: TLR9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 37 percent done.
TLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
Cons ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
KS ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
TLK2   10000 perm   2 sec   (5679 perm/sec)   p_kst 1.349000e-01   p_cons 8.562000e-01   p_joint 1.854000e-01

Outputting figure to mutsig2_images.part000000000175/TLK2.5_2337_10000_0.1349_0.8562_0.1854.png
                gene_name: TLK2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
TM7SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
Cons ci ratio: 3.584152e-02	ci left: 5.347774e-01	ci right 5.543966e-01	k: 5446	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
TM7SF2   10000 perm   2 sec   (6135 perm/sec)   p_kst 1.635000e-01   p_cons 5.446000e-01   p_joint 3.636000e-01

Outputting figure to mutsig2_images.part000000000175/TM7SF2.5_1297_10000_0.1635_0.5446_0.3636.png
                gene_name: TM7SF2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 41 percent done.
TIFAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
Cons ci ratio: 1.670749e-02	ci left: 8.390805e-01	ci right 8.533172e-01	k: 8463	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
TIFAB   10000 perm   1 sec   (6845 perm/sec)   p_kst 6.404000e-01   p_cons 8.463000e-01   p_joint 8.396000e-01

Outputting figure to mutsig2_images.part000000000175/TIFAB.4_490_10000_0.6404_0.8463_0.8396.png
                gene_name: TIFAB
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 43 percent done.
TIGD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
Cons ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
KS ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
TIGD4   10000 perm   2 sec   (6282 perm/sec)   p_kst 1.017000e-01   p_cons 4.794000e-01   p_joint 1.746000e-01

Joint ci ratio: 6.315819e-02	ci left: 1.563751e-01	ci right 1.666235e-01	k: 3229	n:20000
Cons ci ratio: 2.837845e-02	ci left: 4.812495e-01	ci right 4.951539e-01	k: 9764	n:20000
KS ci ratio: 8.399665e-02	ci left: 9.406032e-02	ci right 1.023569e-01	k: 1963	n:20000
TIGD4   20000 perm   4 sec   (5607 perm/sec)   p_kst 9.815000e-02   p_cons 4.882000e-01   p_joint 1.614500e-01

Outputting figure to mutsig2_images.part000000000175/TIGD4.4_1543_20000_0.09815_0.4882_0.16145.png
                gene_name: TIGD4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 45 percent done.
TIGD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
Cons ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
KS ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
TIGD7   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.744000e-01   p_cons 6.092000e-01   p_joint 7.121000e-01

Outputting figure to mutsig2_images.part000000000175/TIGD7.4_1654_10000_0.3744_0.6092_0.7121.png
                gene_name: TIGD7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 47 percent done.
TIMELESS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
KS ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
TIMELESS   10000 perm   2 sec   (5172 perm/sec)   p_kst 9.765000e-01   p_cons 6.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIMELESS.4_3739_10000_0.9765_0.6252_1.png
                gene_name: TIMELESS
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
TJP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
TJP2   10000 perm   2 sec   (5431 perm/sec)   p_kst 6.190000e-01   p_cons 5.620000e-02   p_joint 1.875000e-01

Joint ci ratio: 4.848801e-02	ci left: 2.402914e-01	ci right 2.522825e-01	k: 4925	n:20000
Cons ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
KS ci ratio: 2.163717e-02	ci left: 6.145854e-01	ci right 6.280793e-01	k: 12427	n:20000
TJP2   20000 perm   4 sec   (4877 perm/sec)   p_kst 6.213500e-01   p_cons 6.100000e-02   p_joint 2.462500e-01

Joint ci ratio: 4.181139e-02	ci left: 2.218397e-01	ci right 2.313466e-01	k: 6797	n:30000
Cons ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
KS ci ratio: 1.775154e-02	ci left: 6.135769e-01	ci right 6.246000e-01	k: 18573	n:30000
TJP2   30000 perm   6 sec   (4661 perm/sec)   p_kst 6.191000e-01   p_cons 6.050000e-02   p_joint 2.265667e-01

Outputting figure to mutsig2_images.part000000000175/TJP2.4_3924_30000_0.6191_0.0605_0.22657.png
                gene_name: TJP2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 51 percent done.
TLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
Cons ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
KS ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
TLR1   10000 perm   2 sec   (5555 perm/sec)   p_kst 3.016000e-01   p_cons 6.110000e-01   p_joint 4.936000e-01

Outputting figure to mutsig2_images.part000000000175/TLR1.4_2365_10000_0.3016_0.611_0.4936.png
                gene_name: TLR1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 53 percent done.
TM9SF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
KS ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
TM9SF1   10000 perm   2 sec   (5904 perm/sec)   p_kst 7.400000e-01   p_cons 4.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM9SF1.3_1884_10000_0.74_0.4676_1.png
                gene_name: TM9SF1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
TLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
TLE1   10000 perm   2 sec   (5961 perm/sec)   p_kst 8.788000e-01   p_cons 3.399000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE1.3_2393_10000_0.8788_0.3399_1.png
                gene_name: TLE1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
TLE3   10000 perm   2 sec   (6018 perm/sec)   p_kst 9.035000e-01   p_cons 1.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE3.3_2399_10000_0.9035_0.1933_1.png
                gene_name: TLE3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
TLE4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
TLE4   10000 perm   2 sec   (6132 perm/sec)   p_kst 7.576000e-01   p_cons 7.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE4.2_2402_10000_0.7576_0.7975_1.png
                gene_name: TLE4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
TM2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
TM2D3   10000 perm   2 sec   (6562 perm/sec)   p_kst 4.660000e-01   p_cons 5.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM2D3.3_768_10000_0.466_0.5628_1.png
                gene_name: TM2D3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
TM4SF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
KS ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
TM4SF20   10000 perm   1 sec   (6675 perm/sec)   p_kst 7.630000e-02   p_cons 7.386000e-01   p_joint 3.199000e-01

Joint ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
Cons ci ratio: 1.661571e-02	ci left: 7.294794e-01	ci right 7.417520e-01	k: 14713	n:20000
KS ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
TM4SF20   20000 perm   3 sec   (5972 perm/sec)   p_kst 7.715000e-02   p_cons 7.356500e-01   p_joint 2.133000e-01

Outputting figure to mutsig2_images.part000000000175/TM4SF20.3_706_20000_0.07715_0.73565_0.2133.png
                gene_name: TM4SF20
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 65 percent done.
TM6SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
TM6SF2   10000 perm   2 sec   (6526 perm/sec)   p_kst 5.207000e-01   p_cons 3.713000e-01   p_joint 5.898000e-01

Outputting figure to mutsig2_images.part000000000175/TM6SF2.3_1174_10000_0.5207_0.3713_0.5898.png
                gene_name: TM6SF2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
TM7SF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
Cons ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
TM7SF3   10000 perm   2 sec   (6616 perm/sec)   p_kst 4.501000e-01   p_cons 5.200000e-02   p_joint 1.837000e-01

Joint ci ratio: 5.006648e-02	ci left: 2.286916e-01	ci right 2.404857e-01	k: 4691	n:20000
Cons ci ratio: 1.198764e-01	ci left: 4.770004e-02	ci right 5.383140e-02	k: 1014	n:20000
KS ci ratio: 3.068171e-02	ci left: 4.424389e-01	ci right 4.562758e-01	k: 8987	n:20000
TM7SF3   20000 perm   3 sec   (5878 perm/sec)   p_kst 4.493500e-01   p_cons 5.070000e-02   p_joint 2.345500e-01

Joint ci ratio: 4.287284e-02	ci left: 2.132394e-01	ci right 2.226153e-01	k: 6537	n:30000
Cons ci ratio: 9.759274e-02	ci left: 4.853745e-02	ci right 5.354995e-02	k: 1530	n:30000
KS ci ratio: 2.501092e-02	ci left: 4.445253e-01	ci right 4.558177e-01	k: 13505	n:30000
TM7SF3   30000 perm   5 sec   (5580 perm/sec)   p_kst 4.501667e-01   p_cons 5.100000e-02   p_joint 2.179000e-01

Outputting figure to mutsig2_images.part000000000175/TM7SF3.3_1761_30000_0.45017_0.051_0.2179.png
                gene_name: TM7SF3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
TM9SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 4.816114e-02	ci left: 3.887854e-01	ci right 4.080738e-01	k: 3984	n:10000
TM9SF2   10000 perm   2 sec   (6090 perm/sec)   p_kst 3.984000e-01   p_cons 3.226000e-01   p_joint 6.482000e-01

Outputting figure to mutsig2_images.part000000000175/TM9SF2.3_2060_10000_0.3984_0.3226_0.6482.png
                gene_name: TM9SF2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 71 percent done.
TIGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
TIGD2   10000 perm   2 sec   (6514 perm/sec)   p_kst 5.468000e-01   p_cons 9.049000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIGD2.2_1582_10000_0.5468_0.9049_1.png
                gene_name: TIGD2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
TIGD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
TIGD3   10000 perm   1 sec   (6842 perm/sec)   p_kst 5.027000e-01   p_cons 6.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIGD3.2_1420_10000_0.5027_0.6616_1.png
                gene_name: TIGD3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TIGIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
KS ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
TIGIT   10000 perm   1 sec   (7007 perm/sec)   p_kst 2.130000e-01   p_cons 4.878000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000175/TIGIT.2_751_10000_0.213_0.4878_0.3466.png
                gene_name: TIGIT
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 78 percent done.
TIMM17B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
Cons ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
KS ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
TIMM17B   10000 perm   1 sec   (7216 perm/sec)   p_kst 7.984000e-01   p_cons 3.450000e-02   p_joint 5.861000e-01

Joint ci ratio: 2.328727e-02	ci left: 5.793371e-01	ci right 5.930378e-01	k: 11724	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 1.387254e-02	ci left: 7.940849e-01	ci right 8.052279e-01	k: 15994	n:20000
TIMM17B   20000 perm   3 sec   (6322 perm/sec)   p_kst 7.997000e-01   p_cons 3.450000e-02   p_joint 5.862000e-01

Joint ci ratio: 1.992102e-02	ci left: 5.577985e-01	ci right 5.690558e-01	k: 16903	n:30000
Cons ci ratio: 1.194862e-01	ci left: 3.256037e-02	ci right 3.673038e-02	k: 1038	n:30000
KS ci ratio: 1.129970e-02	ci left: 7.958986e-01	ci right 8.049765e-01	k: 24014	n:30000
TIMM17B   30000 perm   5 sec   (6023 perm/sec)   p_kst 8.004667e-01   p_cons 3.460000e-02   p_joint 5.634333e-01

Joint ci ratio: 1.729030e-02	ci left: 5.574715e-01	ci right 5.672195e-01	k: 22494	n:40000
Cons ci ratio: 1.043134e-01	ci left: 3.231849e-02	ci right 3.589956e-02	k: 1363	n:40000
KS ci ratio: 9.812339e-03	ci left: 7.956430e-01	ci right 8.035135e-01	k: 31984	n:40000
TIMM17B   40000 perm   7 sec   (5821 perm/sec)   p_kst 7.996000e-01   p_cons 3.407500e-02   p_joint 5.623500e-01

Joint ci ratio: 1.426703e-02	ci left: 5.972530e-01	ci right 6.058553e-01	k: 30078	n:50000
Cons ci ratio: 9.318781e-02	ci left: 3.258498e-02	ci right 3.578940e-02	k: 1708	n:50000
KS ci ratio: 8.760522e-03	ci left: 7.966477e-01	ci right 8.036774e-01	k: 40009	n:50000
TIMM17B   50000 perm   9 sec   (5672 perm/sec)   p_kst 8.001800e-01   p_cons 3.416000e-02   p_joint 6.015600e-01

Outputting figure to mutsig2_images.part000000000175/TIMM17B.2_697_50000_0.80018_0.03416_0.60156.png
                gene_name: TIMM17B
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 80 percent done.
TINAGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
TINAGL1   10000 perm   2 sec   (6656 perm/sec)   p_kst 3.417000e-01   p_cons 5.357000e-01   p_joint 7.037000e-01

Outputting figure to mutsig2_images.part000000000175/TINAGL1.2_1448_10000_0.3417_0.5357_0.7037.png
                gene_name: TINAGL1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 82 percent done.
TINF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
KS ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
TINF2   10000 perm   1 sec   (6729 perm/sec)   p_kst 7.439000e-01   p_cons 8.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TINF2.2_1396_10000_0.7439_0.8948_1.png
                gene_name: TINF2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
TIPARP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
TIPARP   10000 perm   2 sec   (6238 perm/sec)   p_kst 7.648000e-01   p_cons 8.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIPARP.2_1994_10000_0.7648_0.8104_1.png
                gene_name: TIPARP
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TJAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
Cons ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
KS ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
TJAP1   10000 perm   2 sec   (6440 perm/sec)   p_kst 3.290000e-01   p_cons 3.929000e-01   p_joint 6.541000e-01

Outputting figure to mutsig2_images.part000000000175/TJAP1.2_1706_10000_0.329_0.3929_0.6541.png
                gene_name: TJAP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 88 percent done.
TJP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
Cons ci ratio: 5.902015e-02	ci left: 2.969755e-01	ci right 3.151376e-01	k: 3060	n:10000
KS ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
TJP3   10000 perm   2 sec   (5867 perm/sec)   p_kst 2.915000e-01   p_cons 3.060000e-01   p_joint 4.232000e-01

Outputting figure to mutsig2_images.part000000000175/TJP3.2_2938_10000_0.2915_0.306_0.4232.png
                gene_name: TJP3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
TLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
Cons ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
KS ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
TLR2   10000 perm   2 sec   (6148 perm/sec)   p_kst 2.706000e-01   p_cons 8.986000e-01   p_joint 6.463000e-01

Outputting figure to mutsig2_images.part000000000175/TLR2.2_2359_10000_0.2706_0.8986_0.6463.png
                gene_name: TLR2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 92 percent done.
TM2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 2.636551e-02	ci left: 6.793193e-01	ci right 6.975708e-01	k: 6885	n:10000
KS ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
TM2D1   10000 perm   1 sec   (7425 perm/sec)   p_kst 1.918000e-01   p_cons 6.885000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000175/TM2D1.2_648_10000_0.1918_0.6885_0.4281.png
                gene_name: TM2D1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 94 percent done.
TM2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
KS ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
TM2D2   10000 perm   1 sec   (7311 perm/sec)   p_kst 8.065000e-01   p_cons 7.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM2D2.2_759_10000_0.8065_0.787_1.png
                gene_name: TM2D2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
TM4SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
TM4SF1   10000 perm   1 sec   (7260 perm/sec)   p_kst 5.647000e-01   p_cons 4.965000e-01   p_joint 7.008000e-01

Outputting figure to mutsig2_images.part000000000175/TM4SF1.2_629_10000_0.5647_0.4965_0.7008.png
                gene_name: TM4SF1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 98 percent done.
TM9SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
TM9SF4   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.768000e-01   p_cons 7.379000e-01   p_joint 6.750000e-01

Outputting figure to mutsig2_images.part000000000175/TM9SF4.2_2001_10000_0.4768_0.7379_0.675.png
                gene_name: TM9SF4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000175
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 175 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 4422618: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000176> was used as the working directory.
Started at Wed Oct 24 18:09:22 2012
Results reported at Wed Oct 24 18:15:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000176.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000176.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 176  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000176.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    371.73 sec.
    Max Memory :      5277 MB
    Max Swap   :      7631 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
176
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 176
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 176: processing genes 15833 - 15923
Calculating significance of each gene.
Using projection method.
15833	TMC2	8.941886e-01
15834	TMC3	8.129605e-01
15835	TMC4	7.879673e-01
15836	TMC5	9.643959e-01
15837	TMC6	9.242228e-01
15838	TMC7	8.818839e-01
15839	TMC8	1
15840	TMCC1	9.467083e-01
15841	TMCC2	1
15842	TMCC3	1
15843	TMCO1	7.019772e-01
15844	TMCO2	1.245993e-01
15845	TMCO3	4.293321e-01
15846	TMCO4	5.953002e-02
15847	TMCO5A	4.701322e-01
15848	TMCO6	9.249845e-01
15849	TMCO7	9.788618e-01
15850	TMED1	3.660337e-01
15851	TMED10	3.572803e-01
15852	TMED2	1
15853	TMED3	5.948188e-01
15854	TMED4	1
15855	TMED5	1
15856	TMED6	8.065028e-01
15857	TMED7	1
15858	TMED7-TICAM2	5.773718e-01
15859	TMED8	7.053235e-01
15860	TMED9	1
15861	TMEFF1	8.170125e-03
15862	TMEFF2	1.948069e-02
15863	TMEM100	5.302201e-01
15864	TMEM101	1
15865	TMEM102	1
15866	TMEM104	1
15867	TMEM105	3.913987e-01
15868	TMEM106A	1
15869	TMEM106B	4.084219e-01
15870	TMEM106C	1
15871	TMEM107	4.554820e-01
15872	TMEM108	9.617426e-01
15873	TMEM109	1
15874	TMEM11	7.013365e-01
15875	TMEM110	5.944481e-01
15876	TMEM111	5.414888e-01
15877	TMEM115	1
15878	TMEM116	7.363270e-01
15879	TMEM117	6.717219e-01
15880	TMEM119	1
15881	TMEM120A	8.628813e-01
15882	TMEM120B	5.720068e-01
15883	TMEM123	5.164588e-01
15884	TMEM125	1
15885	TMEM126A	2.957298e-01
15886	TMEM126B	4.925187e-01
15887	TMEM127	1
15888	TMEM128	1
15889	TMEM130	4.445903e-01
15890	TMEM131	1
15891	TMEM132A	1
15892	TMEM132B	9.954353e-01
15893	TMEM132D	1
15894	TMEM132E	6.961438e-01
15895	TMEM133	5.136019e-01
15896	TMEM134	1
15897	TMEM135	2.371892e-01
15898	TMEM136	1
15899	TMEM138	3.480316e-01
15900	TMEM139	1
15901	TMEM140	1
15902	TMEM141	3.455294e-01
15903	TMEM143	7.780609e-01
15904	TMEM144	1
15905	TMEM145	1.523136e-01
15906	TMEM146	9.919733e-01
15907	TMEM147	1
15908	TMEM149	3.072744e-01
15909	TMEM14A	1.359604e-01
15910	TMEM14B	5.240184e-01
15911	TMEM14C	5.560097e-01
15912	TMEM14E	1
15913	TMEM150A	1
15914	TMEM150B	7.419324e-01
15915	TMEM150C	1
15916	TMEM151A	3.791209e-01
15917	TMEM154	1
15918	TMEM155	1.898965e-01
15919	TMEM156	6.555791e-01
15920	TMEM159	3.459026e-01
15921	TMEM161A	1
15922	TMEM161B	1
15923	TMEM163	8.211070e-01
Done

Running MutSig 2:
Scatter job 176: processing genes 15833 - 15923
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM132D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
TMEM132D   10000 perm   2 sec   (4907 perm/sec)   p_kst 1.975000e-01   p_cons 9.860000e-01   p_joint 3.171000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132D.21_3336_10000_0.1975_0.986_0.3171.png
                gene_name: TMEM132D
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 3 percent done.
TMEM132B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
Cons ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
KS ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
TMEM132B   10000 perm   2 sec   (5147 perm/sec)   p_kst 4.886000e-01   p_cons 7.221000e-01   p_joint 6.911000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132B.19_3273_10000_0.4886_0.7221_0.6911.png
                gene_name: TMEM132B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 5 percent done.
TMEM132E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
Cons ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
KS ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
TMEM132E   10000 perm   2 sec   (5031 perm/sec)   p_kst 4.937000e-01   p_cons 3.992000e-01   p_joint 7.267000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132E.16_2995_10000_0.4937_0.3992_0.7267.png
                gene_name: TMEM132E
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 8 percent done.
TMCO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
Cons ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
TMCO4   10000 perm   2 sec   (6225 perm/sec)   p_kst 2.953000e-01   p_cons 5.856000e-01   p_joint 4.618000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO4.8_1957_10000_0.2953_0.5856_0.4618.png
                gene_name: TMCO4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 11 percent done.
TMCO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.971200e-03	ci left: 9.344406e-01	ci right 9.439015e-01	k: 9393	n:10000
Cons ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
TMCO7   10000 perm   2 sec   (5550 perm/sec)   p_kst 8.019000e-01   p_cons 7.444000e-01   p_joint 9.393000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO7.7_3357_10000_0.8019_0.7444_0.9393.png
                gene_name: TMCO7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 13 percent done.
TMEM117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
Cons ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
KS ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
TMEM117   10000 perm   2 sec   (5911 perm/sec)   p_kst 3.242000e-01   p_cons 6.741000e-01   p_joint 5.181000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM117.7_1573_10000_0.3242_0.6741_0.5181.png
                gene_name: TMEM117
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 16 percent done.
TMCO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
KS ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
TMCO3   10000 perm   2 sec   (6019 perm/sec)   p_kst 6.371000e-01   p_cons 8.040000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO3.6_2082_10000_0.6371_0.804_0.8854.png
                gene_name: TMCO3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 18 percent done.
TMEFF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
TMEFF1   10000 perm   2 sec   (6664 perm/sec)   p_kst 7.440000e-02   p_cons 2.680000e-02   p_joint 4.110000e-02

Joint ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
Cons ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
KS ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
TMEFF1   20000 perm   3 sec   (6018 perm/sec)   p_kst 7.245000e-02   p_cons 2.685000e-02   p_joint 1.915000e-02

Joint ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
Cons ci ratio: 1.360332e-01	ci left: 2.509845e-02	ci right 2.879393e-02	k: 807	n:30000
KS ci ratio: 8.108899e-02	ci left: 6.932881e-02	ci right 7.522101e-02	k: 2167	n:30000
TMEFF1   30000 perm   5 sec   (5739 perm/sec)   p_kst 7.223333e-02   p_cons 2.690000e-02   p_joint 1.380000e-02

Joint ci ratio: 2.132711e-01	ci left: 7.481591e-03	ci right 9.290869e-03	k: 334	n:40000
Cons ci ratio: 1.184505e-01	ci left: 2.506931e-02	ci right 2.824990e-02	k: 1065	n:40000
KS ci ratio: 7.091081e-02	ci left: 6.845269e-02	ci right 7.350980e-02	k: 2838	n:40000
TMEFF1   40000 perm   7 sec   (5563 perm/sec)   p_kst 7.095000e-02   p_cons 2.662500e-02   p_joint 8.350000e-03

Joint ci ratio: 2.121801e-01	ci left: 6.060525e-03	ci right 7.517624e-03	k: 338	n:50000
Cons ci ratio: 1.065842e-01	ci left: 2.493437e-02	ci right 2.776098e-02	k: 1316	n:50000
KS ci ratio: 6.335506e-02	ci left: 6.886236e-02	ci right 7.338759e-02	k: 3555	n:50000
TMEFF1   50000 perm   9 sec   (5426 perm/sec)   p_kst 7.110000e-02   p_cons 2.632000e-02   p_joint 6.760000e-03

Joint ci ratio: 1.450057e-01	ci left: 1.116015e-02	ci right 1.292085e-02	k: 721	n:60000
Cons ci ratio: 9.737371e-02	ci left: 2.501790e-02	ci right 2.759487e-02	k: 1577	n:60000
KS ci ratio: 5.735324e-02	ci left: 7.015790e-02	ci right 7.431693e-02	k: 4333	n:60000
TMEFF1   60000 perm   11 sec   (5307 perm/sec)   p_kst 7.221667e-02   p_cons 2.628333e-02   p_joint 1.201667e-02

Joint ci ratio: 1.486023e-01	ci left: 9.111001e-03	ci right 1.058720e-02	k: 688	n:70000
Cons ci ratio: 8.997512e-02	ci left: 2.521089e-02	ci right 2.760002e-02	k: 1847	n:70000
KS ci ratio: 5.232398e-02	ci left: 7.228305e-02	ci right 7.618090e-02	k: 5195	n:70000
TMEFF1   70000 perm   13 sec   (5197 perm/sec)   p_kst 7.421429e-02   p_cons 2.638571e-02   p_joint 9.828571e-03

Joint ci ratio: 1.527732e-01	ci left: 7.538614e-03	ci right 8.797446e-03	k: 652	n:80000
Cons ci ratio: 8.420505e-02	ci left: 2.526327e-02	ci right 2.749626e-02	k: 2109	n:80000
KS ci ratio: 4.905307e-02	ci left: 7.210876e-02	ci right 7.574721e-02	k: 5913	n:80000
TMEFF1   80000 perm   16 sec   (5094 perm/sec)   p_kst 7.391250e-02   p_cons 2.636250e-02   p_joint 8.150000e-03

Joint ci ratio: 1.138050e-01	ci left: 1.227013e-02	ci right 1.376150e-02	k: 1170	n:90000
Cons ci ratio: 7.604514e-02	ci left: 2.758614e-02	ci right 2.977771e-02	k: 2580	n:90000
KS ci ratio: 4.639944e-02	ci left: 7.177036e-02	ci right 7.519053e-02	k: 6612	n:90000
TMEFF1   90000 perm   18 sec   (5001 perm/sec)   p_kst 7.346667e-02   p_cons 2.866667e-02   p_joint 1.300000e-02

Joint ci ratio: 1.167379e-01	ci left: 1.049869e-02	ci right 1.180989e-02	k: 1114	n:100000
Cons ci ratio: 7.217879e-02	ci left: 2.761492e-02	ci right 2.969254e-02	k: 2864	n:100000
KS ci ratio: 4.398538e-02	ci left: 7.195929e-02	ci right 7.520550e-02	k: 7357	n:100000
TMEFF1   100000 perm   20 sec   (4905 perm/sec)   p_kst 7.357000e-02   p_cons 2.864000e-02   p_joint 1.114000e-02

Joint ci ratio: 9.787563e-02	ci left: 1.366878e-02	ci right 1.508427e-02	k: 1580	n:110000
Cons ci ratio: 6.884792e-02	ci left: 2.764078e-02	ci right 2.962054e-02	k: 3148	n:110000
KS ci ratio: 4.207832e-02	ci left: 7.158648e-02	ci right 7.467244e-02	k: 8043	n:110000
TMEFF1   110000 perm   23 sec   (4818 perm/sec)   p_kst 7.311818e-02   p_cons 2.861818e-02   p_joint 1.436364e-02

Outputting figure to mutsig2_images.part000000000176/TMEFF1.5_1183_110000_0.073118_0.028618_0.014364.png
                gene_name: TMEFF1
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 21 percent done.
TMEFF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
Cons ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KS ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
TMEFF2   10000 perm   1 sec   (7240 perm/sec)   p_kst 8.250000e-01   p_cons 7.160000e-01   p_joint 9.389000e-01

Outputting figure to mutsig2_images.part000000000176/TMEFF2.6_1165_10000_0.825_0.716_0.9389.png
                gene_name: TMEFF2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 24 percent done.
TMEM145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
Cons ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
TMEM145   10000 perm   2 sec   (6346 perm/sec)   p_kst 1.774000e-01   p_cons 8.550000e-01   p_joint 2.384000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM145.6_1542_10000_0.1774_0.855_0.2384.png
                gene_name: TMEM145
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 26 percent done.
TMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
Cons ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
TMC3   10000 perm   2 sec   (5737 perm/sec)   p_kst 4.644000e-01   p_cons 1.802000e-01   p_joint 4.857000e-01

Outputting figure to mutsig2_images.part000000000176/TMC3.5_3391_10000_0.4644_0.1802_0.4857.png
                gene_name: TMC3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 29 percent done.
TMEM131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
TMEM131   10000 perm   2 sec   (4830 perm/sec)   p_kst 4.630000e-01   p_cons 2.800000e-02   p_joint 1.296000e-01

Joint ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
Cons ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
KS ci ratio: 2.984314e-02	ci left: 4.561702e-01	ci right 4.700406e-01	k: 9262	n:20000
TMEM131   20000 perm   5 sec   (4419 perm/sec)   p_kst 4.631000e-01   p_cons 2.850000e-02   p_joint 1.167000e-01

Joint ci ratio: 8.039167e-02	ci left: 7.047366e-02	ci right 7.640926e-02	k: 2202	n:30000
Cons ci ratio: 1.322943e-01	ci left: 2.654940e-02	ci right 3.034265e-02	k: 852	n:30000
KS ci ratio: 2.441491e-02	ci left: 4.564789e-01	ci right 4.677951e-01	k: 13864	n:30000
TMEM131   30000 perm   7 sec   (4264 perm/sec)   p_kst 4.621333e-01   p_cons 2.840000e-02   p_joint 7.340000e-02

Joint ci ratio: 6.030158e-02	ci left: 9.266139e-02	ci right 9.844748e-02	k: 3821	n:40000
Cons ci ratio: 1.222752e-01	ci left: 2.351631e-02	ci right 2.660316e-02	k: 1001	n:40000
KS ci ratio: 2.121596e-02	ci left: 4.555560e-01	ci right 4.653498e-01	k: 18418	n:40000
TMEM131   40000 perm   10 sec   (4164 perm/sec)   p_kst 4.604500e-01   p_cons 2.502500e-02   p_joint 9.552500e-02

Joint ci ratio: 5.205565e-02	ci left: 9.920223e-02	ci right 1.045241e-01	k: 5092	n:50000
Cons ci ratio: 1.091655e-01	ci left: 2.376596e-02	ci right 2.652955e-02	k: 1256	n:50000
KS ci ratio: 1.896751e-02	ci left: 4.563033e-01	ci right 4.650612e-01	k: 23034	n:50000
TMEM131   50000 perm   12 sec   (4083 perm/sec)   p_kst 4.606800e-01   p_cons 2.512000e-02   p_joint 1.018400e-01

Joint ci ratio: 5.254538e-02	ci left: 8.264856e-02	ci right 8.712502e-02	k: 5092	n:60000
Cons ci ratio: 9.892996e-02	ci left: 2.423705e-02	ci right 2.677580e-02	k: 1529	n:60000
KS ci ratio: 1.727253e-02	ci left: 4.579045e-01	ci right 4.658992e-01	k: 27714	n:60000
TMEM131   60000 perm   15 sec   (4010 perm/sec)   p_kst 4.619000e-01   p_cons 2.548333e-02   p_joint 8.486667e-02

Outputting figure to mutsig2_images.part000000000176/TMEM131.5_5816_60000_0.4619_0.025483_0.084867.png
                gene_name: TMEM131
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 32 percent done.
TMEM132A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 4.712230e-02	ci left: 3.992419e-01	ci right 4.186112e-01	k: 4089	n:10000
TMEM132A   10000 perm   2 sec   (5855 perm/sec)   p_kst 4.089000e-01   p_cons 3.739000e-01   p_joint 4.872000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132A.5_3119_10000_0.4089_0.3739_0.4872.png
                gene_name: TMEM132A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 34 percent done.
TMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
TMC2   10000 perm   2 sec   (5899 perm/sec)   p_kst 3.184000e-01   p_cons 2.025000e-01   p_joint 2.687000e-01

Outputting figure to mutsig2_images.part000000000176/TMC2.4_2801_10000_0.3184_0.2025_0.2687.png
                gene_name: TMC2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 37 percent done.
TMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
KS ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
TMC5   10000 perm   2 sec   (5806 perm/sec)   p_kst 9.154000e-01   p_cons 1.980000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000176/TMC5.4_3415_10000_0.9154_0.198_0.5897.png
                gene_name: TMC5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 39 percent done.
TMCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
Cons ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
KS ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
TMCC1   10000 perm   2 sec   (6387 perm/sec)   p_kst 7.780000e-02   p_cons 2.699000e-01   p_joint 1.242000e-01

Joint ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
Cons ci ratio: 4.470328e-02	ci left: 2.714510e-01	ci right 2.839136e-01	k: 5553	n:20000
KS ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
TMCC1   20000 perm   4 sec   (5671 perm/sec)   p_kst 7.570000e-02   p_cons 2.776500e-01   p_joint 6.420000e-02

Joint ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
Cons ci ratio: 3.666767e-02	ci left: 2.707811e-01	ci right 2.809290e-01	k: 8275	n:30000
KS ci ratio: 7.900680e-02	ci left: 7.282946e-02	ci right 7.885299e-02	k: 2274	n:30000
TMCC1   30000 perm   6 sec   (5432 perm/sec)   p_kst 7.580000e-02   p_cons 2.758333e-01   p_joint 7.063333e-02

Outputting figure to mutsig2_images.part000000000176/TMCC1.4_1978_30000_0.0758_0.27583_0.070633.png
                gene_name: TMCC1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 42 percent done.
TMEM135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
Cons ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
TMEM135   10000 perm   1 sec   (6859 perm/sec)   p_kst 3.010000e-02   p_cons 5.878000e-01   p_joint 1.419000e-01

Joint ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
Cons ci ratio: 2.316270e-02	ci left: 5.819431e-01	ci right 5.956310e-01	k: 11776	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
TMEM135   20000 perm   3 sec   (6079 perm/sec)   p_kst 3.195000e-02   p_cons 5.888000e-01   p_joint 7.225000e-02

Joint ci ratio: 7.673086e-02	ci left: 7.695419e-02	ci right 8.312742e-02	k: 2400	n:30000
Cons ci ratio: 1.887879e-02	ci left: 5.840753e-01	ci right 5.952406e-01	k: 17690	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
TMEM135   30000 perm   5 sec   (5825 perm/sec)   p_kst 3.066667e-02   p_cons 5.896667e-01   p_joint 8.000000e-02

Joint ci ratio: 6.616322e-02	ci left: 7.799955e-02	ci right 8.336151e-02	k: 3226	n:40000
Cons ci ratio: 1.631900e-02	ci left: 5.857372e-01	ci right 5.953996e-01	k: 23623	n:40000
KS ci ratio: 1.078423e-01	ci left: 3.024808e-02	ci right 3.372030e-02	k: 1278	n:40000
TMEM135   40000 perm   7 sec   (5645 perm/sec)   p_kst 3.195000e-02   p_cons 5.905750e-01   p_joint 8.065000e-02

Joint ci ratio: 6.637933e-02	ci left: 6.303165e-02	ci right 6.737899e-02	k: 3259	n:50000
Cons ci ratio: 1.455086e-02	ci left: 5.877571e-01	ci right 5.963922e-01	k: 29604	n:50000
KS ci ratio: 9.607769e-02	ci left: 3.066987e-02	ci right 3.378475e-02	k: 1610	n:50000
TMEM135   50000 perm   9 sec   (5501 perm/sec)   p_kst 3.220000e-02   p_cons 5.920800e-01   p_joint 6.518000e-02

Outputting figure to mutsig2_images.part000000000176/TMEM135.4_1437_50000_0.0322_0.59208_0.06518.png
                gene_name: TMEM135
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.067 

Current progress: 45 percent done.
TMEM144
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
Cons ci ratio: 1.054391e-02	ci left: 9.275089e-01	ci right 9.374374e-01	k: 9326	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
TMEM144   10000 perm   1 sec   (6826 perm/sec)   p_kst 1.071000e-01   p_cons 9.326000e-01   p_joint 2.921000e-01

Joint ci ratio: 6.050791e-02	ci left: 1.681758e-01	ci right 1.787193e-01	k: 3468	n:20000
Cons ci ratio: 7.447743e-03	ci left: 9.291394e-01	ci right 9.361342e-01	k: 18654	n:20000
KS ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
TMEM144   20000 perm   3 sec   (6057 perm/sec)   p_kst 1.072500e-01   p_cons 9.327000e-01   p_joint 1.734000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM144.4_1082_20000_0.10725_0.9327_0.1734.png
                gene_name: TMEM144
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 47 percent done.
TMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
Cons ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
KS ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
TMC4   10000 perm   1 sec   (7061 perm/sec)   p_kst 4.424000e-01   p_cons 8.633000e-01   p_joint 8.237000e-01

Outputting figure to mutsig2_images.part000000000176/TMC4.3_2199_10000_0.4424_0.8633_0.8237.png
                gene_name: TMC4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 50 percent done.
TMEM108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
TMEM108   10000 perm   1 sec   (6953 perm/sec)   p_kst 3.788000e-01   p_cons 8.241000e-01   p_joint 6.174000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM108.3_1744_10000_0.3788_0.8241_0.6174.png
                gene_name: TMEM108
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 53 percent done.
TMEM130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
Cons ci ratio: 3.486271e-02	ci left: 5.485012e-01	ci right 5.680648e-01	k: 5583	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
TMEM130   10000 perm   1 sec   (7159 perm/sec)   p_kst 9.250000e-02   p_cons 5.583000e-01   p_joint 2.716000e-01

Joint ci ratio: 6.497890e-02	ci left: 1.489245e-01	ci right 1.589763e-01	k: 3078	n:20000
Cons ci ratio: 2.451108e-02	ci left: 5.542390e-01	ci right 5.680432e-01	k: 11223	n:20000
KS ci ratio: 8.671576e-02	ci left: 8.866611e-02	ci right 9.675275e-02	k: 1853	n:20000
TMEM130   20000 perm   3 sec   (6319 perm/sec)   p_kst 9.265000e-02   p_cons 5.611500e-01   p_joint 1.539000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM130.3_1340_20000_0.09265_0.56115_0.1539.png
                gene_name: TMEM130
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
TMEM149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
Cons ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
KS ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
TMEM149   10000 perm   1 sec   (6983 perm/sec)   p_kst 4.907000e-01   p_cons 2.975000e-01   p_joint 7.513000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM149.3_1084_10000_0.4907_0.2975_0.7513.png
                gene_name: TMEM149
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 58 percent done.
TMC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
TMC7   10000 perm   1 sec   (6952 perm/sec)   p_kst 4.923000e-01   p_cons 4.211000e-01   p_joint 6.228000e-01

Outputting figure to mutsig2_images.part000000000176/TMC7.2_2236_10000_0.4923_0.4211_0.6228.png
                gene_name: TMC7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 61 percent done.
TMCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
KS ci ratio: 2.086125e-02	ci left: 7.710409e-01	ci right 7.873961e-01	k: 7793	n:10000
TMCO2   10000 perm   1 sec   (7902 perm/sec)   p_kst 7.793000e-01   p_cons 1.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMCO2.2_557_10000_0.7793_0.1775_1.png
                gene_name: TMCO2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
TMCO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
TMCO5A   10000 perm   1 sec   (7692 perm/sec)   p_kst 8.649000e-01   p_cons 3.913000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO5A.2_907_10000_0.8649_0.3913_0.8406.png
                gene_name: TMCO5A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 66 percent done.
TMED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
TMED1   10000 perm   1 sec   (7795 perm/sec)   p_kst 3.275000e-01   p_cons 1.471000e-01   p_joint 2.551000e-01

Outputting figure to mutsig2_images.part000000000176/TMED1.2_700_10000_0.3275_0.1471_0.2551.png
                gene_name: TMED1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
TMED10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
Cons ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
TMED10   10000 perm   1 sec   (8087 perm/sec)   p_kst 1.351000e-01   p_cons 6.327000e-01   p_joint 4.030000e-01

Outputting figure to mutsig2_images.part000000000176/TMED10.2_680_10000_0.1351_0.6327_0.403.png
                gene_name: TMED10
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 71 percent done.
TMEM106B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
TMEM106B   10000 perm   1 sec   (7759 perm/sec)   p_kst 4.355000e-01   p_cons 1.579000e-01   p_joint 5.105000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM106B.2_853_10000_0.4355_0.1579_0.5105.png
                gene_name: TMEM106B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 74 percent done.
TMEM110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
Cons ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
KS ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
TMEM110   10000 perm   1 sec   (7672 perm/sec)   p_kst 1.185000e-01   p_cons 6.300000e-02   p_joint 1.540000e-01

Joint ci ratio: 6.967104e-02	ci left: 1.318685e-01	ci right 1.414374e-01	k: 2732	n:20000
Cons ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
KS ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
TMEM110   20000 perm   3 sec   (6759 perm/sec)   p_kst 1.201000e-01   p_cons 6.355000e-02   p_joint 1.366000e-01

Joint ci ratio: 1.128970e-01	ci left: 3.644823e-02	ci right 4.084169e-02	k: 1158	n:30000
Cons ci ratio: 8.718238e-02	ci left: 6.037437e-02	ci right 6.591060e-02	k: 1893	n:30000
KS ci ratio: 6.059132e-02	ci left: 1.187113e-01	ci right 1.261620e-01	k: 3672	n:30000
TMEM110   30000 perm   5 sec   (6407 perm/sec)   p_kst 1.224000e-01   p_cons 6.310000e-02   p_joint 3.860000e-02

Joint ci ratio: 8.060522e-02	ci left: 5.357041e-02	ci right 5.809435e-02	k: 2232	n:40000
Cons ci ratio: 7.523777e-02	ci left: 6.115403e-02	ci right 6.595957e-02	k: 2541	n:40000
KS ci ratio: 5.270295e-02	ci left: 1.182887e-01	ci right 1.247164e-01	k: 4859	n:40000
TMEM110   40000 perm   6 sec   (6166 perm/sec)   p_kst 1.214750e-01   p_cons 6.352500e-02   p_joint 5.580000e-02

Outputting figure to mutsig2_images.part000000000176/TMEM110.2_917_40000_0.12147_0.063525_0.0558.png
                gene_name: TMEM110
               theta_stop: 0.081 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 76 percent done.
TMEM111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
Cons ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
KS ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
TMEM111   10000 perm   1 sec   (7414 perm/sec)   p_kst 6.820000e-01   p_cons 3.839000e-01   p_joint 7.948000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM111.2_818_10000_0.682_0.3839_0.7948.png
                gene_name: TMEM111
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 79 percent done.
TMEM120B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
Cons ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
KS ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
TMEM120B   10000 perm   1 sec   (7611 perm/sec)   p_kst 9.880000e-02   p_cons 5.920000e-02   p_joint 1.167000e-01

Joint ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
Cons ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
TMEM120B   20000 perm   3 sec   (6678 perm/sec)   p_kst 1.024500e-01   p_cons 6.140000e-02   p_joint 5.690000e-02

Joint ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
Cons ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
KS ci ratio: 6.713963e-02	ci left: 9.859726e-02	ci right 1.054800e-01	k: 3060	n:30000
TMEM120B   30000 perm   5 sec   (6320 perm/sec)   p_kst 1.020000e-01   p_cons 6.050000e-02   p_joint 5.593333e-02

Outputting figure to mutsig2_images.part000000000176/TMEM120B.2_1068_30000_0.102_0.0605_0.055933.png
                gene_name: TMEM120B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.059 

Current progress: 82 percent done.
TMEM126A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
Cons ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
KS ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
TMEM126A   10000 perm   1 sec   (7842 perm/sec)   p_kst 1.156000e-01   p_cons 7.681000e-01   p_joint 1.714000e-01

Joint ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
Cons ci ratio: 1.529242e-02	ci left: 7.607246e-01	ci right 7.724978e-01	k: 15333	n:20000
KS ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
TMEM126A   20000 perm   3 sec   (6882 perm/sec)   p_kst 1.140000e-01   p_cons 7.666500e-01   p_joint 1.140000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM126A.2_604_20000_0.114_0.76665_0.114.png
                gene_name: TMEM126A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 84 percent done.
TMEM138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.485100e-02	ci left: 7.043254e-01	ci right 7.221502e-01	k: 7133	n:10000
KS ci ratio: 1.026797e-01	ci left: 1.206309e-01	ci right 1.337871e-01	k: 1271	n:10000
TMEM138   10000 perm   1 sec   (8283 perm/sec)   p_kst 1.271000e-01   p_cons 7.133000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.707962e-02	ci left: 7.185530e-01	ci right 7.309816e-01	k: 14496	n:20000
KS ci ratio: 7.262314e-02	ci left: 1.225132e-01	ci right 1.317955e-01	k: 2542	n:20000
TMEM138   20000 perm   3 sec   (7156 perm/sec)   p_kst 1.271000e-01   p_cons 7.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM138.2_505_20000_0.1271_0.7248_1.png
                gene_name: TMEM138
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
TMEM143
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
Cons ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
TMEM143   10000 perm   1 sec   (7303 perm/sec)   p_kst 5.170000e-02   p_cons 9.659000e-01   p_joint 4.568000e-01

Joint ci ratio: 8.240086e-02	ci left: 9.744601e-02	ci right 1.058702e-01	k: 2032	n:20000
Cons ci ratio: 5.568329e-03	ci left: 9.584823e-01	ci right 9.638825e-01	k: 19225	n:20000
KS ci ratio: 1.181691e-01	ci left: 4.906042e-02	ci right 5.527060e-02	k: 1042	n:20000
TMEM143   20000 perm   3 sec   (6461 perm/sec)   p_kst 5.210000e-02   p_cons 9.612500e-01   p_joint 1.016000e-01

Joint ci ratio: 5.136026e-02	ci left: 1.584076e-01	ci right 1.667912e-01	k: 4877	n:30000
Cons ci ratio: 4.566995e-03	ci left: 9.586449e-01	ci right 9.630653e-01	k: 28827	n:30000
KS ci ratio: 9.611330e-02	ci left: 5.000295e-02	ci right 5.508414e-02	k: 1575	n:30000
TMEM143   30000 perm   5 sec   (6133 perm/sec)   p_kst 5.250000e-02   p_cons 9.609000e-01   p_joint 1.625667e-01

Outputting figure to mutsig2_images.part000000000176/TMEM143.2_1412_30000_0.0525_0.9609_0.16257.png
                gene_name: TMEM143
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 89 percent done.
TMEM14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
KS ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
TMEM14A   10000 perm   1 sec   (7877 perm/sec)   p_kst 5.606000e-01   p_cons 4.999000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM14A.2_316_10000_0.5606_0.4999_1.png
                gene_name: TMEM14A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
TMEM14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
Cons ci ratio: 7.106126e-02	ci left: 2.249406e-01	ci right 2.416151e-01	k: 2332	n:10000
KS ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
TMEM14B   10000 perm   1 sec   (8036 perm/sec)   p_kst 2.573000e-01   p_cons 2.332000e-01   p_joint 3.627000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM14B.2_365_10000_0.2573_0.2332_0.3627.png
                gene_name: TMEM14B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 95 percent done.
TMEM14C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
KS ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
TMEM14C   10000 perm   1 sec   (8316 perm/sec)   p_kst 5.630000e-02   p_cons 2.899000e-01   p_joint 1

Joint ci ratio: 8.676735e-02	ci left: 8.856807e-02	ci right 9.665082e-02	k: 1851	n:20000
Cons ci ratio: 3.876599e-02	ci left: 3.316920e-01	ci right 3.448551e-01	k: 6765	n:20000
KS ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
TMEM14C   20000 perm   3 sec   (7249 perm/sec)   p_kst 5.565000e-02   p_cons 3.382500e-01   p_joint 9.255000e-02

Joint ci ratio: 7.073353e-02	ci left: 8.957236e-02	ci right 9.617340e-02	k: 2785	n:30000
Cons ci ratio: 3.173732e-02	ci left: 3.317169e-01	ci right 3.424480e-01	k: 10112	n:30000
KS ci ratio: 9.369085e-02	ci left: 5.254451e-02	ci right 5.774206e-02	k: 1653	n:30000
TMEM14C   30000 perm   4 sec   (6817 perm/sec)   p_kst 5.510000e-02   p_cons 3.370667e-01   p_joint 9.283333e-02

Outputting figure to mutsig2_images.part000000000176/TMEM14C.2_359_30000_0.0551_0.33707_0.092833.png
                gene_name: TMEM14C
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 97 percent done.
TMEM151A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KS ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
TMEM151A   10000 perm   1 sec   (7389 perm/sec)   p_kst 7.225000e-01   p_cons 2.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM151A.2_1415_10000_0.7225_0.2003_1.png
                gene_name: TMEM151A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000176
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 176 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 4422622: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000177> was used as the working directory.
Started at Wed Oct 24 18:09:30 2012
Results reported at Wed Oct 24 19:10:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000177.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000177.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 177  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000177.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3744.54 sec.
    Max Memory :      5621 MB
    Max Swap   :      7920 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
177
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 177
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 177: processing genes 15924 - 16013
Calculating significance of each gene.
Using projection method.
15924	TMEM164	7.729908e-01
15925	TMEM165	1
15926	TMEM167A	2.548644e-01
15927	TMEM167B	1
15928	TMEM168	8.113143e-01
15929	TMEM169	2.660888e-01
15930	TMEM17	1
15931	TMEM170A	1
15932	TMEM170B	4.971616e-01
15933	TMEM171	1
15934	TMEM173	7.253852e-01
15935	TMEM174	1
15936	TMEM175	8.903375e-01
15937	TMEM176A	1
15938	TMEM176B	1
15939	TMEM177	7.497676e-01
15940	TMEM178	1.141891e-01
15941	TMEM179	1
15942	TMEM179B	1
15943	TMEM18	1.309328e-02
15944	TMEM180	1
15945	TMEM181	1
15946	TMEM182	2.788575e-01
15947	TMEM183A	1
15948	TMEM183B	1
15949	TMEM184A	5.723389e-01
15950	TMEM184B	8.097681e-01
15951	TMEM184C	9.078184e-01
15952	TMEM185A	1.576916e-02
15953	TMEM186	6.230284e-01
15954	TMEM187	1
15955	TMEM188	1
15956	TMEM189	1
15957	TMEM189-UBE2V1	1
15958	TMEM19	3.032638e-01
15959	TMEM190	1.917839e-01
15960	TMEM192	1
15961	TMEM194A	5.096996e-01
15962	TMEM195	1.047262e-04
15963	TMEM196	1.331813e-01
15964	TMEM198	9.179222e-01
15965	TMEM199	8.137811e-01
15966	TMEM2	3.981878e-02
15967	TMEM20	3.592710e-01
15968	TMEM200A	1
15969	TMEM200B	1
15970	TMEM200C	1
15971	TMEM201	1
15972	TMEM202	3.323378e-01
15973	TMEM203	1
15974	TMEM204	1
15975	TMEM205	1
15976	TMEM206	9.205732e-01
15977	TMEM207	1.806115e-01
15978	TMEM208	1
15979	TMEM209	5.969971e-01
15980	TMEM211	4.509960e-01
15981	TMEM213	1
15982	TMEM214	1
15983	TMEM215	6.639826e-01
15984	TMEM216	1
15985	TMEM217	5.478672e-01
15986	TMEM218	1
15987	TMEM219	1
15988	TMEM22	6.805577e-01
15989	TMEM220	1
15990	TMEM222	4.576271e-01
15991	TMEM223	1
15992	TMEM225	5.238248e-01
15993	TMEM229B	1
15994	TMEM231	3.873093e-01
15995	TMEM25	8.836559e-01
15996	TMEM26	1
15997	TMEM27	1
15998	TMEM30A	3.066775e-01
15999	TMEM30B	1
16000/18094 16000	TMEM31	5.008482e-01
16001	TMEM33	1
16002	TMEM35	1
16003	TMEM37	1
16004	TMEM38A	1
16005	TMEM38B	2.193879e-01
16006	TMEM39A	3.644820e-01
16007	TMEM39B	7.969775e-01
16008	TMEM40	1.310842e-01
16009	TMEM41A	1
16010	TMEM41B	6.492209e-01
16011	TMEM42	4.707053e-01
16012	TMEM43	5.391855e-01
16013	TMEM44	1
Done

Running MutSig 2:
Scatter job 177: processing genes 15924 - 16013
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
TMEM195   10000 perm   2 sec   (5032 perm/sec)   p_kst 3.269000e-01   p_cons 3.346000e-01   p_joint 4.095000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM195.15_1390_10000_0.3269_0.3346_0.4095.png
                gene_name: TMEM195
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 3 percent done.
TMEM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
Cons ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
TMEM2   10000 perm   2 sec   (4460 perm/sec)   p_kst 5.741000e-01   p_cons 2.276000e-01   p_joint 5.893000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM2.14_4244_10000_0.5741_0.2276_0.5893.png
                gene_name: TMEM2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 6 percent done.
TMEM200A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
TMEM200A   10000 perm   2 sec   (5264 perm/sec)   p_kst 7.064000e-01   p_cons 2.906000e-01   p_joint 6.784000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM200A.13_1480_10000_0.7064_0.2906_0.6784.png
                gene_name: TMEM200A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 9 percent done.
TMEM168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
Cons ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
KS ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
TMEM168   10000 perm   2 sec   (5807 perm/sec)   p_kst 4.217000e-01   p_cons 8.676000e-01   p_joint 5.829000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM168.5_2110_10000_0.4217_0.8676_0.5829.png
                gene_name: TMEM168
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 11 percent done.
TMEM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
TMEM18   10000 perm   2 sec   (6046 perm/sec)   p_kst 2.959000e-01   p_cons 6.773000e-01   p_joint 4.212000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM18.4_443_10000_0.2959_0.6773_0.4212.png
                gene_name: TMEM18
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 14 percent done.
TMEM185A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
TMEM185A   10000 perm   2 sec   (5992 perm/sec)   p_kst 4.130000e-02   p_cons 1.700000e-03   p_joint 1.060000e-02

Joint ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
Cons ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
KS ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
TMEM185A   20000 perm   4 sec   (5388 perm/sec)   p_kst 4.195000e-02   p_cons 9.500000e-04   p_joint 9.900000e-03

Joint ci ratio: 2.735157e-01	ci left: 5.870334e-03	ci right 7.760411e-03	k: 203	n:30000
Cons ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
TMEM185A   30000 perm   6 sec   (5126 perm/sec)   p_kst 4.153333e-02   p_cons 9.666667e-04   p_joint 6.766667e-03

Joint ci ratio: 3.295371e-01	ci left: 2.945046e-03	ci right 4.128835e-03	k: 140	n:40000
Cons ci ratio: 5.974655e-01	ci left: 7.568492e-04	ci right 1.419033e-03	k: 42	n:40000
KS ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
TMEM185A   40000 perm   8 sec   (4948 perm/sec)   p_kst 4.130000e-02   p_cons 1.050000e-03   p_joint 3.500000e-03

Joint ci ratio: 2.361638e-01	ci left: 4.832940e-03	ci right 6.145478e-03	k: 273	n:50000
Cons ci ratio: 5.540889e-01	ci left: 7.250946e-04	ci right 1.295407e-03	k: 49	n:50000
KS ci ratio: 8.397577e-02	ci left: 4.000365e-02	ci right 4.352980e-02	k: 2087	n:50000
TMEM185A   50000 perm   10 sec   (4817 perm/sec)   p_kst 4.174000e-02   p_cons 9.800000e-04   p_joint 5.460000e-03

Joint ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
Cons ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
KS ci ratio: 7.652539e-02	ci left: 4.029431e-02	ci right 4.351686e-02	k: 2513	n:60000
TMEM185A   60000 perm   13 sec   (4695 perm/sec)   p_kst 4.188333e-02   p_cons 1.033333e-03   p_joint 1.500000e-03

Joint ci ratio: 3.769084e-01	ci left: 1.252865e-03	ci right 1.846828e-03	k: 107	n:70000
Cons ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
KS ci ratio: 7.094987e-02	ci left: 4.030122e-02	ci right 4.327977e-02	k: 2924	n:70000
TMEM185A   70000 perm   15 sec   (4597 perm/sec)   p_kst 4.177143e-02   p_cons 1.014286e-03   p_joint 1.528571e-03

Joint ci ratio: 1.425607e-01	ci left: 8.694677e-03	ci right 1.004126e-02	k: 748	n:80000
Cons ci ratio: 4.408139e-01	ci left: 7.707710e-04	ci right 1.216697e-03	k: 78	n:80000
KS ci ratio: 6.778575e-02	ci left: 3.876322e-02	ci right 4.149526e-02	k: 3209	n:80000
TMEM185A   80000 perm   18 sec   (4508 perm/sec)   p_kst 4.011250e-02   p_cons 9.750000e-04   p_joint 9.350000e-03

Joint ci ratio: 1.445952e-01	ci left: 7.514027e-03	ci right 8.695785e-03	k: 728	n:90000
Cons ci ratio: 4.129953e-01	ci left: 7.942319e-04	ci right 1.216774e-03	k: 89	n:90000
KS ci ratio: 6.391136e-02	ci left: 3.883845e-02	ci right 4.141352e-02	k: 3610	n:90000
TMEM185A   90000 perm   20 sec   (4422 perm/sec)   p_kst 4.011111e-02   p_cons 9.888889e-04   p_joint 8.088889e-03

Joint ci ratio: 1.042189e-01	ci left: 1.322246e-02	ci right 1.468593e-02	k: 1394	n:100000
Cons ci ratio: 3.805403e-01	ci left: 8.588738e-04	ci right 1.270948e-03	k: 105	n:100000
KS ci ratio: 6.077560e-02	ci left: 3.872483e-02	ci right 4.116194e-02	k: 3993	n:100000
TMEM185A   100000 perm   23 sec   (4335 perm/sec)   p_kst 3.993000e-02   p_cons 1.050000e-03   p_joint 1.394000e-02

Joint ci ratio: 9.948395e-02	ci left: 1.322530e-02	ci right 1.461869e-02	k: 1530	n:110000
Cons ci ratio: 3.622097e-01	ci left: 8.714672e-04	ci right 1.264694e-03	k: 116	n:110000
KS ci ratio: 5.781309e-02	ci left: 3.895715e-02	ci right 4.128536e-02	k: 4412	n:110000
TMEM185A   110000 perm   26 sec   (4255 perm/sec)   p_kst 4.010909e-02   p_cons 1.054545e-03   p_joint 1.390909e-02

Joint ci ratio: 9.931276e-02	ci left: 1.217974e-02	ci right 1.346063e-02	k: 1537	n:120000
Cons ci ratio: 3.518430e-01	ci left: 8.519454e-04	ci right 1.222849e-03	k: 123	n:120000
KS ci ratio: 5.449187e-02	ci left: 4.021400e-02	ci right 4.247490e-02	k: 4960	n:120000
TMEM185A   120000 perm   29 sec   (4181 perm/sec)   p_kst 4.133333e-02   p_cons 1.025000e-03   p_joint 1.280833e-02

Joint ci ratio: 1.000893e-01	ci left: 1.107751e-02	ci right 1.225211e-02	k: 1515	n:130000
Cons ci ratio: 3.372034e-01	ci left: 8.637093e-04	ci right 1.220689e-03	k: 134	n:130000
KS ci ratio: 5.251955e-02	ci left: 4.001205e-02	ci right 4.217771e-02	k: 5341	n:130000
TMEM185A   130000 perm   32 sec   (4111 perm/sec)   p_kst 4.108462e-02   p_cons 1.030769e-03   p_joint 1.165385e-02

Joint ci ratio: 9.483404e-02	ci left: 1.148501e-02	ci right 1.263533e-02	k: 1687	n:140000
Cons ci ratio: 3.242511e-01	ci left: 8.740665e-04	ci right 1.218566e-03	k: 145	n:140000
KS ci ratio: 5.055381e-02	ci left: 4.013660e-02	ci right 4.222531e-02	k: 5764	n:140000
TMEM185A   140000 perm   35 sec   (4045 perm/sec)   p_kst 4.117143e-02   p_cons 1.035714e-03   p_joint 1.205000e-02

Joint ci ratio: 9.186477e-02	ci left: 1.144206e-02	ci right 1.255026e-02	k: 1798	n:150000
Cons ci ratio: 3.107104e-01	ci left: 8.955612e-04	ci right 1.230873e-03	k: 158	n:150000
KS ci ratio: 4.884287e-02	ci left: 4.016679e-02	ci right 4.218433e-02	k: 6175	n:150000
TMEM185A   150000 perm   38 sec   (3980 perm/sec)   p_kst 4.116667e-02   p_cons 1.053333e-03   p_joint 1.198667e-02

Joint ci ratio: 8.980259e-02	ci left: 1.123995e-02	ci right 1.230285e-02	k: 1882	n:160000
Cons ci ratio: 3.040922e-01	ci left: 8.799633e-04	ci right 1.201059e-03	k: 165	n:160000
KS ci ratio: 4.738476e-02	ci left: 4.004595e-02	ci right 4.199572e-02	k: 6562	n:160000
TMEM185A   160000 perm   41 sec   (3918 perm/sec)   p_kst 4.101250e-02   p_cons 1.031250e-03   p_joint 1.176250e-02

Joint ci ratio: 7.817100e-02	ci left: 1.400633e-02	ci right 1.515149e-02	k: 2477	n:170000
Cons ci ratio: 2.936617e-01	ci left: 8.934990e-04	ci right 1.206271e-03	k: 177	n:170000
KS ci ratio: 4.615035e-02	ci left: 3.977143e-02	ci right 4.165604e-02	k: 6920	n:170000
TMEM185A   170000 perm   44 sec   (3862 perm/sec)   p_kst 4.070588e-02   p_cons 1.041176e-03   p_joint 1.457059e-02

Joint ci ratio: 7.970027e-02	ci left: 1.273229e-02	ci right 1.379458e-02	k: 2386	n:180000
Cons ci ratio: 2.834899e-01	ci left: 9.108580e-04	ci right 1.216689e-03	k: 190	n:180000
KS ci ratio: 4.474871e-02	ci left: 3.997317e-02	ci right 4.180832e-02	k: 7359	n:180000
TMEM185A   180000 perm   47 sec   (3813 perm/sec)   p_kst 4.088333e-02   p_cons 1.055556e-03   p_joint 1.325556e-02

Joint ci ratio: 7.386838e-02	ci left: 1.406545e-02	ci right 1.514943e-02	k: 2774	n:190000
Cons ci ratio: 2.736362e-01	ci left: 9.314584e-04	ci right 1.231467e-03	k: 204	n:190000
KS ci ratio: 4.357535e-02	ci left: 3.996173e-02	ci right 4.174705e-02	k: 7761	n:190000
TMEM185A   190000 perm   50 sec   (3765 perm/sec)   p_kst 4.084737e-02   p_cons 1.073684e-03   p_joint 1.460000e-02

Joint ci ratio: 7.851476e-02	ci left: 1.182642e-02	ci right 1.279779e-02	k: 2461	n:200000
Cons ci ratio: 2.659619e-01	ci left: 9.408284e-04	ci right 1.233941e-03	k: 216	n:200000
KS ci ratio: 4.246801e-02	ci left: 3.999160e-02	ci right 4.173174e-02	k: 8171	n:200000
TMEM185A   200000 perm   54 sec   (3717 perm/sec)   p_kst 4.085500e-02   p_cons 1.080000e-03   p_joint 1.230500e-02

Joint ci ratio: 7.654915e-02	ci left: 1.186098e-02	ci right 1.280970e-02	k: 2589	n:210000
Cons ci ratio: 2.572178e-01	ci left: 9.627747e-04	ci right 1.251281e-03	k: 231	n:210000
KS ci ratio: 4.140581e-02	ci left: 4.008515e-02	ci right 4.178469e-02	k: 8595	n:210000
TMEM185A   210000 perm   57 sec   (3671 perm/sec)   p_kst 4.092857e-02   p_cons 1.100000e-03   p_joint 1.232857e-02

Joint ci ratio: 7.493377e-02	ci left: 1.182574e-02	ci right 1.275081e-02	k: 2702	n:220000
Cons ci ratio: 2.523705e-01	ci left: 9.573088e-04	ci right 1.237921e-03	k: 240	n:220000
KS ci ratio: 4.048040e-02	ci left: 4.005365e-02	ci right 4.171301e-02	k: 8993	n:220000
TMEM185A   220000 perm   61 sec   (3611 perm/sec)   p_kst 4.087727e-02   p_cons 1.090909e-03   p_joint 1.228182e-02

Joint ci ratio: 7.332431e-02	ci left: 1.182364e-02	ci right 1.272784e-02	k: 2822	n:230000
Cons ci ratio: 2.463122e-01	ci left: 9.646013e-04	ci right 1.239525e-03	k: 252	n:230000
KS ci ratio: 3.963639e-02	ci left: 3.998222e-02	ci right 4.160329e-02	k: 9381	n:230000
TMEM185A   230000 perm   64 sec   (3567 perm/sec)   p_kst 4.078696e-02   p_cons 1.095652e-03   p_joint 1.226957e-02

Joint ci ratio: 7.156848e-02	ci left: 1.190377e-02	ci right 1.279139e-02	k: 2962	n:240000
Cons ci ratio: 2.384289e-01	ci left: 9.909439e-04	ci right 1.263002e-03	k: 269	n:240000
KS ci ratio: 3.878721e-02	ci left: 4.002852e-02	ci right 4.161593e-02	k: 9796	n:240000
TMEM185A   240000 perm   68 sec   (3526 perm/sec)   p_kst 4.081667e-02   p_cons 1.120833e-03   p_joint 1.234167e-02

Joint ci ratio: 7.272504e-02	ci left: 1.107002e-02	ci right 1.190937e-02	k: 2871	n:250000
Cons ci ratio: 2.362544e-01	ci left: 9.701156e-04	ci right 1.233670e-03	k: 274	n:250000
KS ci ratio: 3.797874e-02	ci left: 4.009524e-02	ci right 4.165143e-02	k: 10217	n:250000
TMEM185A   250000 perm   72 sec   (3486 perm/sec)   p_kst 4.086800e-02   p_cons 1.096000e-03   p_joint 1.148400e-02

Joint ci ratio: 7.337687e-02	ci left: 1.045911e-02	ci right 1.125954e-02	k: 2822	n:260000
Cons ci ratio: 2.316665e-01	ci left: 9.726317e-04	ci right 1.231004e-03	k: 285	n:260000
KS ci ratio: 3.721334e-02	ci left: 4.016858e-02	ci right 4.169552e-02	k: 10641	n:260000
TMEM185A   260000 perm   75 sec   (3446 perm/sec)   p_kst 4.092692e-02   p_cons 1.096154e-03   p_joint 1.085385e-02

Joint ci ratio: 6.923565e-02	ci left: 1.132691e-02	ci right 1.214288e-02	k: 3167	n:270000
Cons ci ratio: 2.292761e-01	ci left: 9.575466e-04	ci right 1.208916e-03	k: 291	n:270000
KS ci ratio: 3.592080e-02	ci left: 4.148512e-02	ci right 4.300620e-02	k: 11405	n:270000
TMEM185A   270000 perm   79 sec   (3405 perm/sec)   p_kst 4.224074e-02   p_cons 1.077778e-03   p_joint 1.172963e-02

Joint ci ratio: 7.075662e-02	ci left: 1.045904e-02	ci right 1.122971e-02	k: 3035	n:280000
Cons ci ratio: 2.261996e-01	ci left: 9.502896e-04	ci right 1.195940e-03	k: 299	n:280000
KS ci ratio: 3.527422e-02	ci left: 4.149724e-02	ci right 4.299082e-02	k: 11827	n:280000
TMEM185A   280000 perm   83 sec   (3365 perm/sec)   p_kst 4.223929e-02   p_cons 1.067857e-03   p_joint 1.083929e-02

Joint ci ratio: 6.662420e-02	ci left: 1.140336e-02	ci right 1.219265e-02	k: 3420	n:290000
Cons ci ratio: 2.228818e-01	ci left: 9.468099e-04	ci right 1.187478e-03	k: 308	n:290000
KS ci ratio: 3.470277e-02	ci left: 4.141300e-02	ci right 4.287892e-02	k: 12221	n:290000
TMEM185A   290000 perm   87 sec   (3326 perm/sec)   p_kst 4.214138e-02   p_cons 1.062069e-03   p_joint 1.179310e-02

Joint ci ratio: 6.560732e-02	ci left: 1.137401e-02	ci right 1.214880e-02	k: 3527	n:300000
Cons ci ratio: 2.190174e-01	ci left: 9.498873e-04	ci right 1.186588e-03	k: 319	n:300000
KS ci ratio: 3.412435e-02	ci left: 4.141391e-02	ci right 4.285495e-02	k: 12639	n:300000
TMEM185A   300000 perm   91 sec   (3289 perm/sec)   p_kst 4.213000e-02   p_cons 1.063333e-03   p_joint 1.175667e-02

Joint ci ratio: 6.120839e-02	ci left: 1.265821e-02	ci right 1.346061e-02	k: 4047	n:310000
Cons ci ratio: 2.134196e-01	ci left: 9.711164e-04	ci right 1.206112e-03	k: 336	n:310000
KS ci ratio: 3.360483e-02	ci left: 4.134136e-02	ci right 4.275754e-02	k: 13034	n:310000
TMEM185A   310000 perm   95 sec   (3249 perm/sec)   p_kst 4.204516e-02   p_cons 1.083871e-03   p_joint 1.305484e-02

Joint ci ratio: 6.083408e-02	ci left: 1.241953e-02	ci right 1.320183e-02	k: 4098	n:320000
Cons ci ratio: 2.097180e-01	ci left: 9.762825e-04	ci right 1.207905e-03	k: 348	n:320000
KS ci ratio: 3.308905e-02	ci left: 4.132000e-02	ci right 4.271331e-02	k: 13444	n:320000
TMEM185A   320000 perm   100 sec   (3211 perm/sec)   p_kst 4.201250e-02   p_cons 1.087500e-03   p_joint 1.280625e-02

Joint ci ratio: 6.147167e-02	ci left: 1.179838e-02	ci right 1.254961e-02	k: 4016	n:330000
Cons ci ratio: 2.067768e-01	ci left: 9.754210e-04	ci right 1.203183e-03	k: 358	n:330000
KS ci ratio: 3.261966e-02	ci left: 4.124296e-02	ci right 4.261358e-02	k: 13835	n:330000
TMEM185A   330000 perm   104 sec   (3176 perm/sec)   p_kst 4.192424e-02   p_cons 1.084848e-03   p_joint 1.216970e-02

Joint ci ratio: 6.317553e-02	ci left: 1.084318e-02	ci right 1.155342e-02	k: 3806	n:340000
Cons ci ratio: 2.031310e-01	ci left: 9.830056e-04	ci right 1.207990e-03	k: 371	n:340000
KS ci ratio: 3.216851e-02	ci left: 4.117351e-02	ci right 4.252255e-02	k: 14227	n:340000
TMEM185A   340000 perm   108 sec   (3140 perm/sec)   p_kst 4.184412e-02   p_cons 1.091176e-03   p_joint 1.119412e-02

Joint ci ratio: 6.293553e-02	ci left: 1.061770e-02	ci right 1.131043e-02	k: 3836	n:350000
Cons ci ratio: 1.999316e-01	ci left: 9.874757e-04	ci right 1.209489e-03	k: 383	n:350000
KS ci ratio: 3.171294e-02	ci left: 4.116486e-02	ci right 4.249417e-02	k: 14639	n:350000
TMEM185A   350000 perm   113 sec   (3106 perm/sec)   p_kst 4.182571e-02   p_cons 1.094286e-03   p_joint 1.096000e-02

Joint ci ratio: 6.220387e-02	ci left: 1.057158e-02	ci right 1.125300e-02	k: 3927	n:360000
Cons ci ratio: 1.981350e-01	ci left: 9.785208e-04	ci right 1.196305e-03	k: 390	n:360000
KS ci ratio: 3.127620e-02	ci left: 4.115682e-02	ci right 4.246723e-02	k: 15051	n:360000
TMEM185A   360000 perm   117 sec   (3072 perm/sec)   p_kst 4.180833e-02   p_cons 1.083333e-03   p_joint 1.090833e-02

Joint ci ratio: 5.823681e-02	ci left: 1.174486e-02	ci right 1.245200e-02	k: 4475	n:370000
Cons ci ratio: 1.954053e-01	ci left: 9.803395e-04	ci right 1.195165e-03	k: 401	n:370000
KS ci ratio: 3.084141e-02	ci left: 4.118957e-02	ci right 4.248248e-02	k: 15478	n:370000
TMEM185A   370000 perm   122 sec   (3039 perm/sec)   p_kst 4.183243e-02   p_cons 1.083784e-03   p_joint 1.209459e-02

Joint ci ratio: 5.804313e-02	ci left: 1.151614e-02	ci right 1.220713e-02	k: 4506	n:380000
Cons ci ratio: 1.916277e-01	ci left: 9.946072e-04	ci right 1.207855e-03	k: 417	n:380000
KS ci ratio: 3.040432e-02	ci left: 4.127297e-02	ci right 4.254981e-02	k: 15925	n:380000
TMEM185A   380000 perm   126 sec   (3006 perm/sec)   p_kst 4.190789e-02   p_cons 1.097368e-03   p_joint 1.185789e-02

Joint ci ratio: 5.453625e-02	ci left: 1.271766e-02	ci right 1.343319e-02	k: 5098	n:390000
Cons ci ratio: 1.895980e-01	ci left: 9.910800e-04	ci right 1.201061e-03	k: 426	n:390000
KS ci ratio: 2.999677e-02	ci left: 4.132167e-02	ci right 4.258258e-02	k: 16360	n:390000
TMEM185A   390000 perm   131 sec   (2973 perm/sec)   p_kst 4.194872e-02   p_cons 1.092308e-03   p_joint 1.307179e-02

Joint ci ratio: 5.639454e-02	ci left: 1.159830e-02	ci right 1.227380e-02	k: 4773	n:400000
Cons ci ratio: 1.880637e-01	ci left: 9.829753e-04	ci right 1.189361e-03	k: 433	n:400000
KS ci ratio: 2.960150e-02	ci left: 4.137797e-02	ci right 4.262368e-02	k: 16799	n:400000
TMEM185A   400000 perm   136 sec   (2942 perm/sec)   p_kst 4.199750e-02   p_cons 1.082500e-03   p_joint 1.193250e-02

Joint ci ratio: 5.512595e-02	ci left: 1.184696e-02	ci right 1.252094e-02	k: 4994	n:410000
Cons ci ratio: 1.863546e-01	ci left: 9.775978e-04	ci right 1.180779e-03	k: 441	n:410000
KS ci ratio: 2.921880e-02	ci left: 4.143889e-02	ci right 4.267003e-02	k: 17241	n:410000
TMEM185A   410000 perm   141 sec   (2907 perm/sec)   p_kst 4.205122e-02   p_cons 1.075610e-03   p_joint 1.218049e-02

Joint ci ratio: 5.351469e-02	ci left: 1.227659e-02	ci right 1.295397e-02	k: 5297	n:420000
Cons ci ratio: 1.834709e-01	ci left: 9.861125e-04	ci right 1.187539e-03	k: 455	n:420000
KS ci ratio: 2.887444e-02	ci left: 4.143080e-02	ci right 4.264696e-02	k: 17655	n:420000
TMEM185A   420000 perm   146 sec   (2876 perm/sec)   p_kst 4.203571e-02   p_cons 1.083333e-03   p_joint 1.261190e-02

Joint ci ratio: 5.637653e-02	ci left: 1.080504e-02	ci right 1.143413e-02	k: 4780	n:430000
Cons ci ratio: 1.814919e-01	ci left: 9.853732e-04	ci right 1.184239e-03	k: 465	n:430000
KS ci ratio: 2.853950e-02	ci left: 4.143010e-02	ci right 4.263190e-02	k: 18072	n:430000
TMEM185A   430000 perm   151 sec   (2846 perm/sec)   p_kst 4.202791e-02   p_cons 1.081395e-03   p_joint 1.111628e-02

Joint ci ratio: 5.574480e-02	ci left: 1.080372e-02	ci right 1.142547e-02	k: 4889	n:440000
Cons ci ratio: 1.803356e-01	ci left: 9.759967e-04	ci right 1.171578e-03	k: 471	n:440000
KS ci ratio: 2.818732e-02	ci left: 4.151077e-02	ci right 4.269981e-02	k: 18525	n:440000
TMEM185A   440000 perm   156 sec   (2817 perm/sec)   p_kst 4.210227e-02   p_cons 1.070455e-03   p_joint 1.111136e-02

Joint ci ratio: 5.568847e-02	ci left: 1.058771e-02	ci right 1.119639e-02	k: 4900	n:450000
Cons ci ratio: 1.773536e-01	ci left: 9.882724e-04	ci right 1.182688e-03	k: 487	n:450000
KS ci ratio: 2.787394e-02	ci left: 4.151289e-02	ci right 4.268857e-02	k: 18944	n:450000
TMEM185A   450000 perm   161 sec   (2790 perm/sec)   p_kst 4.209778e-02   p_cons 1.082222e-03   p_joint 1.088889e-02

Joint ci ratio: 5.548951e-02	ci left: 1.043469e-02	ci right 1.103236e-02	k: 4936	n:460000
Cons ci ratio: 1.748625e-01	ci left: 9.958818e-04	ci right 1.188752e-03	k: 501	n:460000
KS ci ratio: 2.756187e-02	ci left: 4.154091e-02	ci right 4.270400e-02	k: 19375	n:460000
TMEM185A   460000 perm   166 sec   (2763 perm/sec)   p_kst 4.211957e-02   p_cons 1.089130e-03   p_joint 1.073043e-02

Joint ci ratio: 5.344402e-02	ci left: 1.101446e-02	ci right 1.162137e-02	k: 5318	n:470000
Cons ci ratio: 1.723064e-01	ci left: 1.005222e-03	ci right 1.196759e-03	k: 516	n:470000
KS ci ratio: 2.727228e-02	ci left: 4.153187e-02	ci right 4.268229e-02	k: 19789	n:470000
TMEM185A   470000 perm   172 sec   (2736 perm/sec)   p_kst 4.210426e-02   p_cons 1.097872e-03   p_joint 1.131489e-02

Joint ci ratio: 5.290000e-02	ci left: 1.101112e-02	ci right 1.161147e-02	k: 5428	n:480000
Cons ci ratio: 1.708263e-01	ci left: 1.002224e-03	ci right 1.191381e-03	k: 525	n:480000
KS ci ratio: 2.698117e-02	ci left: 4.155432e-02	ci right 4.269288e-02	k: 20218	n:480000
TMEM185A   480000 perm   177 sec   (2708 perm/sec)   p_kst 4.212083e-02   p_cons 1.093750e-03   p_joint 1.130833e-02

Joint ci ratio: 5.270043e-02	ci left: 1.087096e-02	ci right 1.146137e-02	k: 5470	n:490000
Cons ci ratio: 1.690676e-01	ci left: 1.003265e-03	ci right 1.190470e-03	k: 536	n:490000
KS ci ratio: 2.671066e-02	ci left: 4.154144e-02	ci right 4.266807e-02	k: 20630	n:490000
TMEM185A   490000 perm   183 sec   (2679 perm/sec)   p_kst 4.210204e-02   p_cons 1.093878e-03   p_joint 1.116327e-02

Joint ci ratio: 5.221643e-02	ci left: 1.085486e-02	ci right 1.143882e-02	k: 5572	n:500000
Cons ci ratio: 1.675152e-01	ci left: 1.002357e-03	ci right 1.187502e-03	k: 546	n:500000
KS ci ratio: 2.645536e-02	ci left: 4.150727e-02	ci right 4.262205e-02	k: 21031	n:500000
TMEM185A   500000 perm   189 sec   (2652 perm/sec)   p_kst 4.206200e-02   p_cons 1.092000e-03   p_joint 1.114400e-02

Joint ci ratio: 5.119641e-02	ci left: 1.107366e-02	ci right 1.165740e-02	k: 5795	n:510000
Cons ci ratio: 1.657073e-01	ci left: 1.005252e-03	ci right 1.188727e-03	k: 558	n:510000
KS ci ratio: 2.619257e-02	ci left: 4.151930e-02	ci right 4.262316e-02	k: 21455	n:510000
TMEM185A   510000 perm   194 sec   (2623 perm/sec)   p_kst 4.206863e-02   p_cons 1.094118e-03   p_joint 1.136275e-02

Joint ci ratio: 5.070890e-02	ci left: 1.107334e-02	ci right 1.165135e-02	k: 5907	n:520000
Cons ci ratio: 1.643895e-01	ci left: 1.002512e-03	ci right 1.183889e-03	k: 567	n:520000
KS ci ratio: 2.594736e-02	ci left: 4.150035e-02	ci right 4.259322e-02	k: 21863	n:520000
TMEM185A   520000 perm   201 sec   (2593 perm/sec)   p_kst 4.204423e-02   p_cons 1.090385e-03   p_joint 1.135962e-02

Joint ci ratio: 5.019290e-02	ci left: 1.109170e-02	ci right 1.166460e-02	k: 6029	n:530000
Cons ci ratio: 1.621212e-01	ci left: 1.012553e-03	ci right 1.192972e-03	k: 583	n:530000
KS ci ratio: 2.569266e-02	ci left: 4.153279e-02	ci right 4.261562e-02	k: 22298	n:530000
TMEM185A   530000 perm   207 sec   (2564 perm/sec)   p_kst 4.207170e-02   p_cons 1.100000e-03   p_joint 1.137547e-02

Joint ci ratio: 4.979889e-02	ci left: 1.106185e-02	ci right 1.162860e-02	k: 6125	n:540000
Cons ci ratio: 1.606156e-01	ci left: 1.013350e-03	ci right 1.192072e-03	k: 594	n:540000
KS ci ratio: 2.546637e-02	ci left: 4.149782e-02	ci right 4.257007e-02	k: 22697	n:540000
TMEM185A   540000 perm   214 sec   (2525 perm/sec)   p_kst 4.203148e-02   p_cons 1.100000e-03   p_joint 1.134259e-02

Joint ci ratio: 4.928997e-02	ci left: 1.108878e-02	ci right 1.165093e-02	k: 6252	n:550000
Cons ci ratio: 1.591512e-01	ci left: 1.014125e-03	ci right 1.191198e-03	k: 605	n:550000
KS ci ratio: 2.523228e-02	ci left: 4.150753e-02	ci right 4.257003e-02	k: 23120	n:550000
TMEM185A   550000 perm   220 sec   (2496 perm/sec)   p_kst 4.203636e-02   p_cons 1.100000e-03   p_joint 1.136727e-02

Joint ci ratio: 4.883506e-02	ci left: 1.109713e-02	ci right 1.165437e-02	k: 6369	n:560000
Cons ci ratio: 1.567123e-01	ci left: 1.028604e-03	ci right 1.205194e-03	k: 624	n:560000
KS ci ratio: 2.500231e-02	ci left: 4.152404e-02	ci right 4.257714e-02	k: 23547	n:560000
TMEM185A   560000 perm   226 sec   (2473 perm/sec)   p_kst 4.204821e-02   p_cons 1.114286e-03   p_joint 1.137321e-02

Joint ci ratio: 4.838498e-02	ci left: 1.110868e-02	ci right 1.166122e-02	k: 6488	n:570000
Cons ci ratio: 1.551073e-01	ci left: 1.032476e-03	ci right 1.207746e-03	k: 637	n:570000
KS ci ratio: 2.477204e-02	ci left: 4.156094e-02	ci right 4.260513e-02	k: 23986	n:570000
TMEM185A   570000 perm   233 sec   (2451 perm/sec)   p_kst 4.208070e-02   p_cons 1.117544e-03   p_joint 1.138246e-02

Joint ci ratio: 4.836341e-02	ci left: 1.092905e-02	ci right 1.147240e-02	k: 6495	n:580000
Cons ci ratio: 1.537872e-01	ci left: 1.032907e-03	ci right 1.206621e-03	k: 648	n:580000
KS ci ratio: 2.454645e-02	ci left: 4.160175e-02	ci right 4.263731e-02	k: 24428	n:580000
TMEM185A   580000 perm   239 sec   (2426 perm/sec)   p_kst 4.211724e-02   p_cons 1.117241e-03   p_joint 1.119828e-02

Joint ci ratio: 4.797751e-02	ci left: 1.091963e-02	ci right 1.145807e-02	k: 6600	n:590000
Cons ci ratio: 1.520397e-01	ci left: 1.039851e-03	ci right 1.212565e-03	k: 663	n:590000
KS ci ratio: 2.432742e-02	ci left: 4.163954e-02	ci right 4.266666e-02	k: 24869	n:590000
TMEM185A   590000 perm   245 sec   (2405 perm/sec)   p_kst 4.215085e-02   p_cons 1.123729e-03   p_joint 1.118644e-02

Joint ci ratio: 4.756842e-02	ci left: 1.092537e-02	ci right 1.145937e-02	k: 6714	n:600000
Cons ci ratio: 1.509078e-01	ci left: 1.038555e-03	ci right 1.209653e-03	k: 673	n:600000
KS ci ratio: 2.412609e-02	ci left: 4.163633e-02	ci right 4.265476e-02	k: 25286	n:600000
TMEM185A   600000 perm   252 sec   (2383 perm/sec)   p_kst 4.214333e-02   p_cons 1.121667e-03   p_joint 1.119000e-02

Joint ci ratio: 4.714520e-02	ci left: 1.094228e-02	ci right 1.147222e-02	k: 6835	n:610000
Cons ci ratio: 1.499105e-01	ci left: 1.035729e-03	ci right 1.205132e-03	k: 682	n:610000
KS ci ratio: 2.393260e-02	ci left: 4.162349e-02	ci right 4.263332e-02	k: 25697	n:610000
TMEM185A   610000 perm   258 sec   (2362 perm/sec)   p_kst 4.212623e-02   p_cons 1.118033e-03   p_joint 1.120492e-02

Joint ci ratio: 4.679093e-02	ci left: 1.093156e-02	ci right 1.145689e-02	k: 6939	n:620000
Cons ci ratio: 1.488251e-01	ci left: 1.034549e-03	ci right 1.202426e-03	k: 692	n:620000
KS ci ratio: 2.373894e-02	ci left: 4.162713e-02	ci right 4.262877e-02	k: 26118	n:620000
TMEM185A   620000 perm   265 sec   (2341 perm/sec)   p_kst 4.212581e-02   p_cons 1.116129e-03   p_joint 1.119194e-02

Joint ci ratio: 4.718859e-02	ci left: 1.057917e-02	ci right 1.109201e-02	k: 6825	n:630000
Cons ci ratio: 1.477630e-01	ci left: 1.033412e-03	ci right 1.199802e-03	k: 702	n:630000
KS ci ratio: 2.353834e-02	ci left: 4.167014e-02	ci right 4.266423e-02	k: 26564	n:630000
TMEM185A   630000 perm   272 sec   (2320 perm/sec)   p_kst 4.216508e-02   p_cons 1.114286e-03   p_joint 1.083333e-02

Joint ci ratio: 4.683333e-02	ci left: 1.057446e-02	ci right 1.108311e-02	k: 6929	n:640000
Cons ci ratio: 1.466203e-01	ci left: 1.033819e-03	ci right 1.198875e-03	k: 713	n:640000
KS ci ratio: 2.336668e-02	ci left: 4.162950e-02	ci right 4.261528e-02	k: 26957	n:640000
TMEM185A   640000 perm   278 sec   (2300 perm/sec)   p_kst 4.212031e-02   p_cons 1.114063e-03   p_joint 1.082656e-02

Joint ci ratio: 4.648597e-02	ci left: 1.056991e-02	ci right 1.107446e-02	k: 7033	n:650000
Cons ci ratio: 1.449048e-01	ci left: 1.043115e-03	ci right 1.207537e-03	k: 730	n:650000
KS ci ratio: 2.319076e-02	ci left: 4.161767e-02	ci right 4.259565e-02	k: 27368	n:650000
TMEM185A   650000 perm   285 sec   (2280 perm/sec)   p_kst 4.210462e-02   p_cons 1.123077e-03   p_joint 1.082000e-02

Joint ci ratio: 5.022875e-02	ci left: 8.914202e-03	ci right 9.374971e-03	k: 6034	n:660000
Cons ci ratio: 1.441187e-01	ci left: 1.038993e-03	ci right 1.201800e-03	k: 738	n:660000
KS ci ratio: 2.301875e-02	ci left: 4.160622e-02	ci right 4.257659e-02	k: 27779	n:660000
TMEM185A   660000 perm   292 sec   (2261 perm/sec)   p_kst 4.208939e-02   p_cons 1.118182e-03   p_joint 9.142424e-03

Joint ci ratio: 4.995729e-02	ci left: 8.878423e-03	ci right 9.334791e-03	k: 6100	n:670000
Cons ci ratio: 1.433452e-01	ci left: 1.034996e-03	ci right 1.196233e-03	k: 746	n:670000
KS ci ratio: 2.286576e-02	ci left: 4.154171e-02	ci right 4.250405e-02	k: 28154	n:670000
TMEM185A   670000 perm   299 sec   (2242 perm/sec)   p_kst 4.202090e-02   p_cons 1.113433e-03   p_joint 9.104478e-03

Joint ci ratio: 4.955250e-02	ci left: 8.893089e-03	ci right 9.346402e-03	k: 6200	n:680000
Cons ci ratio: 1.417408e-01	ci left: 1.043885e-03	ci right 1.204532e-03	k: 763	n:680000
KS ci ratio: 2.268923e-02	ci left: 4.157272e-02	ci right 4.252824e-02	k: 28593	n:680000
TMEM185A   680000 perm   306 sec   (2224 perm/sec)   p_kst 4.204853e-02   p_cons 1.122059e-03   p_joint 9.117647e-03

Joint ci ratio: 4.912594e-02	ci left: 8.918798e-03	ci right 9.369396e-03	k: 6308	n:690000
Cons ci ratio: 1.400098e-01	ci left: 1.055322e-03	ci right 1.215580e-03	k: 782	n:690000
KS ci ratio: 2.252604e-02	ci left: 4.156971e-02	ci right 4.251820e-02	k: 29009	n:690000
TMEM185A   690000 perm   313 sec   (2205 perm/sec)   p_kst 4.204203e-02   p_cons 1.133333e-03   p_joint 9.142029e-03

Joint ci ratio: 4.877930e-02	ci left: 8.918384e-03	ci right 9.365693e-03	k: 6398	n:700000
Cons ci ratio: 1.385136e-01	ci left: 1.063686e-03	ci right 1.223346e-03	k: 799	n:700000
KS ci ratio: 2.236434e-02	ci left: 4.157391e-02	ci right 4.251560e-02	k: 29430	n:700000
TMEM185A   700000 perm   320 sec   (2187 perm/sec)   p_kst 4.204286e-02   p_cons 1.141429e-03   p_joint 9.140000e-03

Joint ci ratio: 4.846251e-02	ci left: 8.909643e-03	ci right 9.353531e-03	k: 6482	n:710000
Cons ci ratio: 1.379120e-01	ci left: 1.058222e-03	ci right 1.216316e-03	k: 806	n:710000
KS ci ratio: 2.221306e-02	ci left: 4.155280e-02	ci right 4.248756e-02	k: 29833	n:710000
TMEM185A   710000 perm   327 sec   (2169 perm/sec)   p_kst 4.201831e-02   p_cons 1.135211e-03   p_joint 9.129577e-03

Joint ci ratio: 4.817032e-02	ci left: 8.894293e-03	ci right 9.334670e-03	k: 6561	n:720000
Cons ci ratio: 1.371496e-01	ci left: 1.055595e-03	ci right 1.212352e-03	k: 815	n:720000
KS ci ratio: 2.205795e-02	ci left: 4.155716e-02	ci right 4.248542e-02	k: 30254	n:720000
TMEM185A   720000 perm   335 sec   (2151 perm/sec)   p_kst 4.201944e-02   p_cons 1.131944e-03   p_joint 9.112500e-03

Joint ci ratio: 4.788335e-02	ci left: 8.879372e-03	ci right 9.316318e-03	k: 6640	n:730000
Cons ci ratio: 1.363996e-01	ci left: 1.053041e-03	ci right 1.208495e-03	k: 824	n:730000
KS ci ratio: 2.190718e-02	ci left: 4.155734e-02	ci right 4.247917e-02	k: 30672	n:730000
TMEM185A   730000 perm   342 sec   (2133 perm/sec)   p_kst 4.201644e-02   p_cons 1.128767e-03   p_joint 9.095890e-03

Joint ci ratio: 4.759431e-02	ci left: 8.867532e-03	ci right 9.301189e-03	k: 6721	n:740000
Cons ci ratio: 1.355805e-01	ci left: 1.051865e-03	ci right 1.206137e-03	k: 834	n:740000
KS ci ratio: 2.175397e-02	ci left: 4.157770e-02	ci right 4.249346e-02	k: 31105	n:740000
TMEM185A   740000 perm   350 sec   (2116 perm/sec)   p_kst 4.203378e-02   p_cons 1.127027e-03   p_joint 9.082432e-03

Joint ci ratio: 4.724390e-02	ci left: 8.881052e-03	ci right 9.312086e-03	k: 6821	n:750000
Cons ci ratio: 1.343786e-01	ci left: 1.057165e-03	ci right 1.210730e-03	k: 849	n:750000
KS ci ratio: 2.160322e-02	ci left: 4.160019e-02	ci right 4.251002e-02	k: 31540	n:750000
TMEM185A   750000 perm   357 sec   (2099 perm/sec)   p_kst 4.205333e-02   p_cons 1.132000e-03   p_joint 9.094667e-03

Joint ci ratio: 4.695248e-02	ci left: 8.874720e-03	ci right 9.302718e-03	k: 6906	n:760000
Cons ci ratio: 1.339857e-01	ci left: 1.049612e-03	ci right 1.201600e-03	k: 854	n:760000
KS ci ratio: 2.147168e-02	ci left: 4.156190e-02	ci right 4.246528e-02	k: 31929	n:760000
TMEM185A   760000 perm   365 sec   (2082 perm/sec)   p_kst 4.201184e-02   p_cons 1.123684e-03   p_joint 9.086842e-03

Joint ci ratio: 4.664284e-02	ci left: 8.877547e-03	ci right 9.302782e-03	k: 6998	n:770000
Cons ci ratio: 1.332862e-01	ci left: 1.047279e-03	ci right 1.198073e-03	k: 863	n:770000
KS ci ratio: 2.133426e-02	ci left: 4.155563e-02	ci right 4.245302e-02	k: 32342	n:770000
TMEM185A   770000 perm   373 sec   (2066 perm/sec)   p_kst 4.200260e-02   p_cons 1.120779e-03   p_joint 9.088312e-03

Joint ci ratio: 4.252696e-02	ci left: 1.054643e-02	ci right 1.100594e-02	k: 8404	n:780000
Cons ci ratio: 1.319935e-01	ci left: 1.054924e-03	ci right 1.205231e-03	k: 880	n:780000
KS ci ratio: 2.120248e-02	ci left: 4.153805e-02	ci right 4.242946e-02	k: 32746	n:780000
TMEM185A   780000 perm   381 sec   (2050 perm/sec)   p_kst 4.198205e-02   p_cons 1.128205e-03   p_joint 1.077436e-02

Joint ci ratio: 4.239499e-02	ci left: 1.047930e-02	ci right 1.093443e-02	k: 8457	n:790000
Cons ci ratio: 1.313985e-01	ci left: 1.051363e-03	ci right 1.200435e-03	k: 888	n:790000
KS ci ratio: 2.105985e-02	ci left: 4.157132e-02	ci right 4.245736e-02	k: 33190	n:790000
TMEM185A   790000 perm   388 sec   (2034 perm/sec)   p_kst 4.201266e-02   p_cons 1.124051e-03   p_joint 1.070506e-02

Joint ci ratio: 4.200066e-02	ci left: 1.054496e-02	ci right 1.099859e-02	k: 8616	n:800000
Cons ci ratio: 1.304480e-01	ci left: 1.053939e-03	ci right 1.202211e-03	k: 901	n:800000
KS ci ratio: 2.092721e-02	ci left: 4.157641e-02	ci right 4.245691e-02	k: 33612	n:800000
TMEM185A   800000 perm   396 sec   (2018 perm/sec)   p_kst 4.201500e-02   p_cons 1.126250e-03   p_joint 1.077000e-02

Joint ci ratio: 4.183939e-02	ci left: 1.049662e-02	ci right 1.094639e-02	k: 8683	n:810000
Cons ci ratio: 1.298023e-01	ci left: 1.051677e-03	ci right 1.198842e-03	k: 910	n:810000
KS ci ratio: 2.079481e-02	ci left: 4.158999e-02	ci right 4.246514e-02	k: 34041	n:810000
TMEM185A   810000 perm   404 sec   (2003 perm/sec)   p_kst 4.202593e-02   p_cons 1.123457e-03   p_joint 1.071975e-02

Joint ci ratio: 4.160791e-02	ci left: 1.048567e-02	ci right 1.093243e-02	k: 8780	n:820000
Cons ci ratio: 1.286074e-01	ci left: 1.058913e-03	ci right 1.205623e-03	k: 927	n:820000
KS ci ratio: 2.067115e-02	ci left: 4.157898e-02	ci right 4.244864e-02	k: 34450	n:820000
TMEM185A   820000 perm   412 sec   (1988 perm/sec)   p_kst 4.201220e-02   p_cons 1.130488e-03   p_joint 1.070732e-02

Joint ci ratio: 4.135906e-02	ci left: 1.048573e-02	ci right 1.092975e-02	k: 8886	n:830000
Cons ci ratio: 1.278519e-01	ci left: 1.058983e-03	ci right 1.204775e-03	k: 938	n:830000
KS ci ratio: 2.054660e-02	ci left: 4.158025e-02	ci right 4.244464e-02	k: 34869	n:830000
TMEM185A   830000 perm   421 sec   (1973 perm/sec)   p_kst 4.201084e-02   p_cons 1.130120e-03   p_joint 1.070602e-02

Joint ci ratio: 4.103398e-02	ci left: 1.052703e-02	ci right 1.096921e-02	k: 9027	n:840000
Cons ci ratio: 1.270427e-01	ci left: 1.060207e-03	ci right 1.205174e-03	k: 950	n:840000
KS ci ratio: 2.041944e-02	ci left: 4.160046e-02	ci right 4.245985e-02	k: 35304	n:840000
TMEM185A   840000 perm   429 sec   (1959 perm/sec)   p_kst 4.202857e-02   p_cons 1.130952e-03   p_joint 1.074643e-02

Joint ci ratio: 4.082007e-02	ci left: 1.051380e-02	ci right 1.095307e-02	k: 9122	n:850000
Cons ci ratio: 1.265780e-01	ci left: 1.055707e-03	ci right 1.199492e-03	k: 957	n:850000
KS ci ratio: 2.029550e-02	ci left: 4.161669e-02	ci right 4.247114e-02	k: 35736	n:850000
TMEM185A   850000 perm   437 sec   (1945 perm/sec)   p_kst 4.204235e-02   p_cons 1.125882e-03   p_joint 1.073176e-02

Joint ci ratio: 4.072800e-02	ci left: 1.043988e-02	ci right 1.087505e-02	k: 9164	n:860000
Cons ci ratio: 1.257925e-01	ci left: 1.056945e-03	ci right 1.199938e-03	k: 969	n:860000
KS ci ratio: 2.016913e-02	ci left: 4.165108e-02	ci right 4.250085e-02	k: 36184	n:860000
TMEM185A   860000 perm   446 sec   (1929 perm/sec)   p_kst 4.207442e-02   p_cons 1.126744e-03   p_joint 1.065581e-02

Joint ci ratio: 4.031904e-02	ci left: 1.053152e-02	ci right 1.096600e-02	k: 9350	n:870000
Cons ci ratio: 1.250215e-01	ci left: 1.058156e-03	ci right 1.200371e-03	k: 981	n:870000
KS ci ratio: 2.005682e-02	ci left: 4.163779e-02	ci right 4.248250e-02	k: 36591	n:870000
TMEM185A   870000 perm   454 sec   (1914 perm/sec)   p_kst 4.205862e-02   p_cons 1.127586e-03   p_joint 1.074713e-02

Joint ci ratio: 4.025414e-02	ci left: 1.044670e-02	ci right 1.087698e-02	k: 9381	n:880000
Cons ci ratio: 1.238908e-01	ci left: 1.065950e-03	ci right 1.207821e-03	k: 999	n:880000
KS ci ratio: 1.993792e-02	ci left: 4.165875e-02	ci right 4.249882e-02	k: 37028	n:880000
TMEM185A   880000 perm   463 sec   (1900 perm/sec)   p_kst 4.207727e-02   p_cons 1.135227e-03   p_joint 1.066023e-02

Joint ci ratio: 4.155399e-02	ci left: 9.694234e-03	ci right 1.010672e-02	k: 8810	n:890000
Cons ci ratio: 1.233984e-01	ci left: 1.062684e-03	ci right 1.203517e-03	k: 1007	n:890000
KS ci ratio: 1.982553e-02	ci left: 4.166135e-02	ci right 4.249669e-02	k: 37449	n:890000
TMEM185A   890000 perm   472 sec   (1886 perm/sec)   p_kst 4.207753e-02   p_cons 1.131461e-03   p_joint 9.898876e-03

Joint ci ratio: 3.962573e-02	ci left: 1.054347e-02	ci right 1.097080e-02	k: 9680	n:900000
Cons ci ratio: 1.226703e-01	ci left: 1.063799e-03	ci right 1.203888e-03	k: 1019	n:900000
KS ci ratio: 1.971367e-02	ci left: 4.166945e-02	ci right 4.250017e-02	k: 37875	n:900000
TMEM185A   900000 perm   481 sec   (1872 perm/sec)   p_kst 4.208333e-02   p_cons 1.132222e-03   p_joint 1.075556e-02

Joint ci ratio: 3.939839e-02	ci left: 1.054947e-02	ci right 1.097453e-02	k: 9792	n:910000
Cons ci ratio: 1.220142e-01	ci left: 1.063827e-03	ci right 1.203116e-03	k: 1030	n:910000
KS ci ratio: 1.960020e-02	ci left: 4.169159e-02	ci right 4.251792e-02	k: 38314	n:910000
TMEM185A   910000 perm   489 sec   (1859 perm/sec)   p_kst 4.210330e-02   p_cons 1.131868e-03   p_joint 1.076044e-02

Joint ci ratio: 3.881795e-02	ci left: 1.075019e-02	ci right 1.117681e-02	k: 10085	n:920000
Cons ci ratio: 1.210202e-01	ci left: 1.070180e-03	ci right 1.209078e-03	k: 1047	n:920000
KS ci ratio: 1.949261e-02	ci left: 4.169704e-02	ci right 4.251889e-02	k: 38738	n:920000
TMEM185A   920000 perm   498 sec   (1846 perm/sec)   p_kst 4.210652e-02   p_cons 1.138043e-03   p_joint 1.096196e-02

Joint ci ratio: 3.914526e-02	ci left: 1.045887e-02	ci right 1.087752e-02	k: 9920	n:930000
Cons ci ratio: 1.201630e-01	ci left: 1.074316e-03	ci right 1.212692e-03	k: 1062	n:930000
KS ci ratio: 1.938832e-02	ci left: 4.169596e-02	ci right 4.251335e-02	k: 39156	n:930000
TMEM185A   930000 perm   507 sec   (1834 perm/sec)   p_kst 4.210323e-02   p_cons 1.141935e-03   p_joint 1.066667e-02

Joint ci ratio: 3.891624e-02	ci left: 1.047086e-02	ci right 1.088748e-02	k: 10037	n:940000
Cons ci ratio: 1.194904e-01	ci left: 1.075270e-03	ci right 1.212940e-03	k: 1074	n:940000
KS ci ratio: 1.927781e-02	ci left: 4.172774e-02	ci right 4.254104e-02	k: 39605	n:940000
TMEM185A   940000 perm   516 sec   (1822 perm/sec)   p_kst 4.213298e-02   p_cons 1.142553e-03   p_joint 1.067766e-02

Joint ci ratio: 3.872784e-02	ci left: 1.046280e-02	ci right 1.087704e-02	k: 10135	n:950000
Cons ci ratio: 1.186652e-01	ci left: 1.079271e-03	ci right 1.216431e-03	k: 1089	n:950000
KS ci ratio: 1.918267e-02	ci left: 4.170229e-02	ci right 4.251103e-02	k: 40000	n:950000
TMEM185A   950000 perm   525 sec   (1810 perm/sec)   p_kst 4.210526e-02   p_cons 1.146316e-03   p_joint 1.066842e-02

Joint ci ratio: 3.835319e-02	ci left: 1.055808e-02	ci right 1.097196e-02	k: 10333	n:960000
Cons ci ratio: 1.181247e-01	ci left: 1.078137e-03	ci right 1.214485e-03	k: 1099	n:960000
KS ci ratio: 1.908301e-02	ci left: 4.170226e-02	ci right 4.250675e-02	k: 40419	n:960000
TMEM185A   960000 perm   534 sec   (1799 perm/sec)   p_kst 4.210312e-02   p_cons 1.144792e-03   p_joint 1.076354e-02

Joint ci ratio: 3.831227e-02	ci left: 1.047271e-02	ci right 1.088279e-02	k: 10356	n:970000
Cons ci ratio: 1.171695e-01	ci left: 1.085033e-03	ci right 1.221067e-03	k: 1117	n:970000
KS ci ratio: 1.898197e-02	ci left: 4.171456e-02	ci right 4.251498e-02	k: 40850	n:970000
TMEM185A   970000 perm   543 sec   (1787 perm/sec)   p_kst 4.211340e-02   p_cons 1.151546e-03   p_joint 1.067629e-02

Joint ci ratio: 3.814352e-02	ci left: 1.045883e-02	ci right 1.086652e-02	k: 10448	n:980000
Cons ci ratio: 1.165973e-01	ci left: 1.084857e-03	ci right 1.220160e-03	k: 1128	n:980000
KS ci ratio: 1.888228e-02	ci left: 4.172763e-02	ci right 4.252406e-02	k: 41282	n:980000
TMEM185A   980000 perm   552 sec   (1776 perm/sec)   p_kst 4.212449e-02   p_cons 1.151020e-03   p_joint 1.066122e-02

Joint ci ratio: 3.940351e-02	ci left: 9.702905e-03	ci right 1.009391e-02	k: 9798	n:990000
Cons ci ratio: 1.161866e-01	ci left: 1.081745e-03	ci right 1.216151e-03	k: 1136	n:990000
KS ci ratio: 1.878956e-02	ci left: 4.171732e-02	ci right 4.250960e-02	k: 41691	n:990000
TMEM185A   990000 perm   561 sec   (1763 perm/sec)   p_kst 4.211212e-02   p_cons 1.147475e-03   p_joint 9.896970e-03

Joint ci ratio: 3.772842e-02	ci left: 1.047846e-02	ci right 1.088238e-02	k: 10679	n:1000000
Cons ci ratio: 1.153774e-01	ci left: 1.086464e-03	ci right 1.220452e-03	k: 1152	n:1000000
KS ci ratio: 1.868846e-02	ci left: 4.174904e-02	ci right 4.253761e-02	k: 42142	n:1000000
TMEM185A   1000000 perm   571 sec   (1752 perm/sec)   p_kst 4.214200e-02   p_cons 1.152000e-03   p_joint 1.067900e-02

Joint ci ratio: 3.715968e-02	ci left: 1.069547e-02	ci right 1.110140e-02	k: 11006	n:1010000
Cons ci ratio: 1.144868e-01	ci left: 1.093016e-03	ci right 1.226702e-03	k: 1170	n:1010000
KS ci ratio: 1.858897e-02	ci left: 4.178015e-02	ci right 4.256506e-02	k: 42593	n:1010000
TMEM185A   1010000 perm   580 sec   (1741 perm/sec)   p_kst 4.217129e-02   p_cons 1.158416e-03   p_joint 1.089703e-02

Joint ci ratio: 3.698040e-02	ci left: 1.069454e-02	ci right 1.109844e-02	k: 11113	n:1020000
Cons ci ratio: 1.140979e-01	ci left: 1.089919e-03	ci right 1.222743e-03	k: 1178	n:1020000
KS ci ratio: 1.849913e-02	ci left: 4.177551e-02	ci right 4.255650e-02	k: 43008	n:1020000
TMEM185A   1020000 perm   589 sec   (1730 perm/sec)   p_kst 4.216471e-02   p_cons 1.154902e-03   p_joint 1.089510e-02

Joint ci ratio: 3.679044e-02	ci left: 1.070133e-02	ci right 1.110337e-02	k: 11228	n:1030000
Cons ci ratio: 1.135217e-01	ci left: 1.090657e-03	ci right 1.222854e-03	k: 1190	n:1030000
KS ci ratio: 1.840329e-02	ci left: 4.180288e-02	ci right 4.258028e-02	k: 43456	n:1030000
TMEM185A   1030000 perm   599 sec   (1720 perm/sec)   p_kst 4.219029e-02   p_cons 1.155340e-03   p_joint 1.090097e-02

Joint ci ratio: 3.663114e-02	ci left: 1.069180e-02	ci right 1.109170e-02	k: 11326	n:1040000
Cons ci ratio: 1.130011e-01	ci left: 1.090447e-03	ci right 1.221972e-03	k: 1201	n:1040000
KS ci ratio: 1.831262e-02	ci left: 4.181345e-02	ci right 4.258718e-02	k: 43887	n:1040000
TMEM185A   1040000 perm   608 sec   (1709 perm/sec)   p_kst 4.219904e-02   p_cons 1.154808e-03   p_joint 1.089038e-02

Joint ci ratio: 3.643039e-02	ci left: 1.070793e-02	ci right 1.110620e-02	k: 11451	n:1050000
Cons ci ratio: 1.122101e-01	ci left: 1.095796e-03	ci right 1.226980e-03	k: 1218	n:1050000
KS ci ratio: 1.822392e-02	ci left: 4.182098e-02	ci right 4.259107e-02	k: 44315	n:1050000
TMEM185A   1050000 perm   618 sec   (1698 perm/sec)   p_kst 4.220476e-02   p_cons 1.160000e-03   p_joint 1.090571e-02

Joint ci ratio: 3.626301e-02	ci left: 1.070601e-02	ci right 1.110233e-02	k: 11557	n:1060000
Cons ci ratio: 1.116164e-01	ci left: 1.097379e-03	ci right 1.228012e-03	k: 1231	n:1060000
KS ci ratio: 1.814348e-02	ci left: 4.179739e-02	ci right 4.256361e-02	k: 44710	n:1060000
TMEM185A   1060000 perm   628 sec   (1688 perm/sec)   p_kst 4.217925e-02   p_cons 1.161321e-03   p_joint 1.090283e-02

Joint ci ratio: 3.740882e-02	ci left: 9.967883e-03	ci right 1.034879e-02	k: 10868	n:1070000
Cons ci ratio: 1.113009e-01	ci left: 1.093483e-03	ci right 1.223260e-03	k: 1238	n:1070000
KS ci ratio: 1.805888e-02	ci left: 4.179751e-02	ci right 4.256012e-02	k: 45130	n:1070000
TMEM185A   1070000 perm   638 sec   (1677 perm/sec)   p_kst 4.217757e-02   p_cons 1.157009e-03   p_joint 1.015701e-02

Joint ci ratio: 3.594739e-02	ci left: 1.069493e-02	ci right 1.108733e-02	k: 11761	n:1080000
Cons ci ratio: 1.108101e-01	ci left: 1.093260e-03	ci right 1.222402e-03	k: 1249	n:1080000
KS ci ratio: 1.797400e-02	ci left: 4.180408e-02	ci right 4.256319e-02	k: 45557	n:1080000
TMEM185A   1080000 perm   648 sec   (1666 perm/sec)   p_kst 4.218241e-02   p_cons 1.156481e-03   p_joint 1.088981e-02

Joint ci ratio: 3.577741e-02	ci left: 1.069864e-02	ci right 1.108928e-02	k: 11873	n:1090000
Cons ci ratio: 1.102383e-01	ci left: 1.094828e-03	ci right 1.223443e-03	k: 1262	n:1090000
KS ci ratio: 1.789234e-02	ci left: 4.180141e-02	ci right 4.255699e-02	k: 45974	n:1090000
TMEM185A   1090000 perm   658 sec   (1656 perm/sec)   p_kst 4.217798e-02   p_cons 1.157798e-03   p_joint 1.089266e-02

Joint ci ratio: 3.562484e-02	ci left: 1.069328e-02	ci right 1.108203e-02	k: 11975	n:1100000
Cons ci ratio: 1.098477e-01	ci left: 1.092831e-03	ci right 1.220728e-03	k: 1271	n:1100000
KS ci ratio: 1.781500e-02	ci left: 4.178431e-02	ci right 4.253628e-02	k: 46375	n:1100000
TMEM185A   1100000 perm   669 sec   (1645 perm/sec)   p_kst 4.215909e-02   p_cons 1.155455e-03   p_joint 1.088636e-02

Joint ci ratio: 3.546975e-02	ci left: 1.069070e-02	ci right 1.107763e-02	k: 12080	n:1110000
Cons ci ratio: 1.095469e-01	ci left: 1.089119e-03	ci right 1.216210e-03	k: 1278	n:1110000
KS ci ratio: 1.773330e-02	ci left: 4.179175e-02	ci right 4.254037e-02	k: 46803	n:1110000
TMEM185A   1110000 perm   680 sec   (1633 perm/sec)   p_kst 4.216486e-02   p_cons 1.151351e-03   p_joint 1.088288e-02

Joint ci ratio: 3.512484e-02	ci left: 1.080500e-02	ci right 1.119218e-02	k: 12317	n:1120000
Cons ci ratio: 1.089943e-01	ci left: 1.090685e-03	ci right 1.217275e-03	k: 1291	n:1120000
KS ci ratio: 1.765252e-02	ci left: 4.179995e-02	ci right 4.254527e-02	k: 47232	n:1120000
TMEM185A   1120000 perm   690 sec   (1623 perm/sec)   p_kst 4.217143e-02   p_cons 1.152679e-03   p_joint 1.099732e-02

Joint ci ratio: 3.496478e-02	ci left: 1.080850e-02	ci right 1.119401e-02	k: 12430	n:1130000
Cons ci ratio: 1.082840e-01	ci left: 1.095668e-03	ci right 1.221955e-03	k: 1308	n:1130000
KS ci ratio: 1.757515e-02	ci left: 4.179744e-02	ci right 4.253942e-02	k: 47649	n:1130000
TMEM185A   1130000 perm   700 sec   (1613 perm/sec)   p_kst 4.216726e-02   p_cons 1.157522e-03   p_joint 1.100000e-02

Joint ci ratio: 3.480409e-02	ci left: 1.081369e-02	ci right 1.119758e-02	k: 12545	n:1140000
Cons ci ratio: 1.078319e-01	ci left: 1.095445e-03	ci right 1.221146e-03	k: 1319	n:1140000
KS ci ratio: 1.749898e-02	ci left: 4.179411e-02	ci right 4.253278e-02	k: 48065	n:1140000
TMEM185A   1140000 perm   711 sec   (1603 perm/sec)   p_kst 4.216228e-02   p_cons 1.157018e-03   p_joint 1.100439e-02

Joint ci ratio: 3.461381e-02	ci left: 1.083862e-02	ci right 1.122124e-02	k: 12683	n:1150000
Cons ci ratio: 1.071439e-01	ci left: 1.100305e-03	ci right 1.225707e-03	k: 1336	n:1150000
KS ci ratio: 1.741704e-02	ci left: 4.182202e-02	ci right 4.255768e-02	k: 48517	n:1150000
TMEM185A   1150000 perm   722 sec   (1594 perm/sec)   p_kst 4.218870e-02   p_cons 1.161739e-03   p_joint 1.102870e-02

Joint ci ratio: 3.446197e-02	ci left: 1.084090e-02	ci right 1.122189e-02	k: 12795	n:1160000
Cons ci ratio: 1.065872e-01	ci left: 1.102566e-03	ci right 1.227532e-03	k: 1350	n:1160000
KS ci ratio: 1.733901e-02	ci left: 4.183657e-02	ci right 4.256917e-02	k: 48954	n:1160000
TMEM185A   1160000 perm   732 sec   (1584 perm/sec)   p_kst 4.220172e-02   p_cons 1.163793e-03   p_joint 1.103017e-02

Joint ci ratio: 3.571499e-02	ci left: 1.000940e-02	ci right 1.037423e-02	k: 11923	n:1170000
Cons ci ratio: 1.062341e-01	ci left: 1.100630e-03	ci right 1.224937e-03	k: 1359	n:1170000
KS ci ratio: 1.726001e-02	ci left: 4.186025e-02	ci right 4.258988e-02	k: 49402	n:1170000
TMEM185A   1170000 perm   743 sec   (1575 perm/sec)   p_kst 4.222393e-02   p_cons 1.161538e-03   p_joint 1.019060e-02

Joint ci ratio: 3.558713e-02	ci left: 9.996806e-03	ci right 1.035984e-02	k: 12009	n:1180000
Cons ci ratio: 1.060008e-01	ci left: 1.096252e-03	ci right 1.219776e-03	k: 1365	n:1180000
KS ci ratio: 1.719325e-02	ci left: 4.183120e-02	ci right 4.255749e-02	k: 49788	n:1180000
TMEM185A   1180000 perm   754 sec   (1566 perm/sec)   p_kst 4.219322e-02   p_cons 1.156780e-03   p_joint 1.017712e-02

Joint ci ratio: 3.543696e-02	ci left: 9.997753e-03	ci right 1.035926e-02	k: 12111	n:1190000
Cons ci ratio: 1.056150e-01	ci left: 1.095221e-03	ci right 1.218152e-03	k: 1375	n:1190000
KS ci ratio: 1.712209e-02	ci left: 4.182692e-02	ci right 4.255010e-02	k: 50203	n:1190000
TMEM185A   1190000 perm   765 sec   (1556 perm/sec)   p_kst 4.218739e-02   p_cons 1.155462e-03   p_joint 1.017731e-02

Joint ci ratio: 3.403547e-02	ci left: 1.074721e-02	ci right 1.112015e-02	k: 13119	n:1200000
Cons ci ratio: 1.052714e-01	ci left: 1.093396e-03	ci right 1.215698e-03	k: 1384	n:1200000
KS ci ratio: 1.704619e-02	ci left: 4.184928e-02	ci right 4.256960e-02	k: 50650	n:1200000
TMEM185A   1200000 perm   776 sec   (1547 perm/sec)   p_kst 4.220833e-02   p_cons 1.153333e-03   p_joint 1.093250e-02

Joint ci ratio: 3.512784e-02	ci left: 1.000780e-02	ci right 1.036645e-02	k: 12325	n:1210000
Cons ci ratio: 1.048934e-01	ci left: 1.092407e-03	ci right 1.214133e-03	k: 1394	n:1210000
KS ci ratio: 1.698152e-02	ci left: 4.182271e-02	ci right 4.253981e-02	k: 51038	n:1210000
TMEM185A   1210000 perm   787 sec   (1538 perm/sec)   p_kst 4.218017e-02   p_cons 1.152066e-03   p_joint 1.018595e-02

Joint ci ratio: 3.376131e-02	ci left: 1.074495e-02	ci right 1.111475e-02	k: 13333	n:1220000
Cons ci ratio: 1.044823e-01	ci left: 1.092233e-03	ci right 1.213433e-03	k: 1405	n:1220000
KS ci ratio: 1.691278e-02	ci left: 4.181944e-02	ci right 4.253356e-02	k: 51454	n:1220000
TMEM185A   1220000 perm   798 sec   (1529 perm/sec)   p_kst 4.217541e-02   p_cons 1.151639e-03   p_joint 1.092869e-02

Joint ci ratio: 3.363555e-02	ci left: 1.073821e-02	ci right 1.110637e-02	k: 13433	n:1230000
Cons ci ratio: 1.041496e-01	ci left: 1.090480e-03	ci right 1.211076e-03	k: 1414	n:1230000
KS ci ratio: 1.684080e-02	ci left: 4.183566e-02	ci right 4.254699e-02	k: 51894	n:1230000
TMEM185A   1230000 perm   809 sec   (1520 perm/sec)   p_kst 4.219024e-02   p_cons 1.149593e-03   p_joint 1.092114e-02

Joint ci ratio: 3.347743e-02	ci left: 1.075317e-02	ci right 1.112008e-02	k: 13560	n:1240000
Cons ci ratio: 1.034570e-01	ci left: 1.096610e-03	ci right 1.217029e-03	k: 1433	n:1240000
KS ci ratio: 1.677039e-02	ci left: 4.184841e-02	ci right 4.255695e-02	k: 52330	n:1240000
TMEM185A   1240000 perm   820 sec   (1512 perm/sec)   p_kst 4.220161e-02   p_cons 1.155645e-03   p_joint 1.093548e-02

Joint ci ratio: 3.318210e-02	ci left: 1.085835e-02	ci right 1.122552e-02	k: 13801	n:1250000
Cons ci ratio: 1.031340e-01	ci left: 1.094851e-03	ci right 1.214679e-03	k: 1442	n:1250000
KS ci ratio: 1.670021e-02	ci left: 4.186416e-02	ci right 4.256997e-02	k: 52770	n:1250000
TMEM185A   1250000 perm   831 sec   (1503 perm/sec)   p_kst 4.221600e-02   p_cons 1.153600e-03   p_joint 1.104080e-02

Joint ci ratio: 3.322375e-02	ci left: 1.074619e-02	ci right 1.111003e-02	k: 13768	n:1260000
Cons ci ratio: 1.027786e-01	ci left: 1.093894e-03	ci right 1.213180e-03	k: 1452	n:1260000
KS ci ratio: 1.663677e-02	ci left: 4.185120e-02	ci right 4.255408e-02	k: 53174	n:1260000
TMEM185A   1260000 perm   843 sec   (1495 perm/sec)   p_kst 4.220159e-02   p_cons 1.152381e-03   p_joint 1.092698e-02

Joint ci ratio: 3.292553e-02	ci left: 1.085603e-02	ci right 1.122022e-02	k: 14017	n:1270000
Cons ci ratio: 1.020781e-01	ci left: 1.100626e-03	ci right 1.219778e-03	k: 1472	n:1270000
KS ci ratio: 1.657341e-02	ci left: 4.184158e-02	ci right 4.254161e-02	k: 53582	n:1270000
TMEM185A   1270000 perm   854 sec   (1488 perm/sec)   p_kst 4.219055e-02   p_cons 1.159055e-03   p_joint 1.103701e-02

Joint ci ratio: 3.280180e-02	ci left: 1.085335e-02	ci right 1.121606e-02	k: 14123	n:1280000
Cons ci ratio: 1.017678e-01	ci left: 1.098879e-03	ci right 1.217459e-03	k: 1481	n:1280000
KS ci ratio: 1.650805e-02	ci left: 4.184536e-02	ci right 4.254266e-02	k: 54007	n:1280000
TMEM185A   1280000 perm   865 sec   (1480 perm/sec)   p_kst 4.219297e-02   p_cons 1.157031e-03   p_joint 1.103359e-02

Joint ci ratio: 3.267829e-02	ci left: 1.085148e-02	ci right 1.121274e-02	k: 14230	n:1290000
Cons ci ratio: 1.014603e-01	ci left: 1.097160e-03	ci right 1.215176e-03	k: 1490	n:1290000
KS ci ratio: 1.644109e-02	ci left: 4.186066e-02	ci right 4.255535e-02	k: 54447	n:1290000
TMEM185A   1290000 perm   876 sec   (1472 perm/sec)   p_kst 4.220698e-02   p_cons 1.155039e-03   p_joint 1.103101e-02

Joint ci ratio: 3.255732e-02	ci left: 1.084888e-02	ci right 1.120869e-02	k: 14336	n:1300000
Cons ci ratio: 1.011218e-01	ci left: 1.096218e-03	ci right 1.213715e-03	k: 1500	n:1300000
KS ci ratio: 1.638071e-02	ci left: 4.184738e-02	ci right 4.253928e-02	k: 54850	n:1300000
TMEM185A   1300000 perm   888 sec   (1464 perm/sec)   p_kst 4.219231e-02   p_cons 1.153846e-03   p_joint 1.102769e-02

Joint ci ratio: 3.245814e-02	ci left: 1.083269e-02	ci right 1.119085e-02	k: 14424	n:1310000
Cons ci ratio: 1.006534e-01	ci left: 1.098267e-03	ci right 1.215407e-03	k: 1514	n:1310000
KS ci ratio: 1.632006e-02	ci left: 4.183887e-02	ci right 4.252804e-02	k: 55259	n:1310000
TMEM185A   1310000 perm   899 sec   (1457 perm/sec)   p_kst 4.218244e-02   p_cons 1.155725e-03   p_joint 1.101069e-02

Joint ci ratio: 3.072136e-02	ci left: 1.199688e-02	ci right 1.237193e-02	k: 16082	n:1320000
Cons ci ratio: 1.002900e-01	ci left: 1.098071e-03	ci right 1.214742e-03	k: 1525	n:1320000
KS ci ratio: 1.625642e-02	ci left: 4.184860e-02	ci right 4.253523e-02	k: 55692	n:1320000
TMEM185A   1320000 perm   911 sec   (1449 perm/sec)   p_kst 4.219091e-02   p_cons 1.155303e-03   p_joint 1.218333e-02

Joint ci ratio: 3.222566e-02	ci left: 1.082566e-02	ci right 1.118098e-02	k: 14633	n:1330000
Cons ci ratio: 9.999561e-02	ci left: 1.096412e-03	ci right 1.212545e-03	k: 1534	n:1330000
KS ci ratio: 1.619608e-02	ci left: 4.184546e-02	ci right 4.252947e-02	k: 56108	n:1330000
TMEM185A   1330000 perm   923 sec   (1442 perm/sec)   p_kst 4.218647e-02   p_cons 1.153383e-03   p_joint 1.100226e-02

Outputting figure to mutsig2_images.part000000000177/TMEM185A.4_1081_1330000_0.042186_0.0011534_0.011002.png
                gene_name: TMEM185A
               theta_stop: 0.100 
                    nperm: 1330000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0012 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 17 percent done.
TMEM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
Cons ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
KS ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
TMEM19   10000 perm   2 sec   (6079 perm/sec)   p_kst 5.565000e-01   p_cons 1.809000e-01   p_joint 3.676000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM19.4_1035_10000_0.5565_0.1809_0.3676.png
                gene_name: TMEM19
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
TMEM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
TMEM22   10000 perm   2 sec   (5908 perm/sec)   p_kst 3.634000e-01   p_cons 1.864000e-01   p_joint 3.259000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM22.4_1243_10000_0.3634_0.1864_0.3259.png
                gene_name: TMEM22
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 23 percent done.
TMEM169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
TMEM169   10000 perm   2 sec   (6657 perm/sec)   p_kst 6.928000e-01   p_cons 8.064000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM169.3_902_10000_0.6928_0.8064_1.png
                gene_name: TMEM169
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TMEM175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
KS ci ratio: 2.428697e-02	ci left: 7.137110e-01	ci right 7.313592e-01	k: 7226	n:10000
TMEM175   10000 perm   2 sec   (6017 perm/sec)   p_kst 7.226000e-01   p_cons 9.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM175.3_1555_10000_0.7226_0.9758_1.png
                gene_name: TMEM175
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
TMEM177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
Cons ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
KS ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
TMEM177   10000 perm   2 sec   (6389 perm/sec)   p_kst 7.270000e-02   p_cons 6.175000e-01   p_joint 1.081000e-01

Joint ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
Cons ci ratio: 2.100503e-02	ci left: 6.284843e-01	ci right 6.418763e-01	k: 12704	n:20000
KS ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
TMEM177   20000 perm   4 sec   (5639 perm/sec)   p_kst 7.310000e-02   p_cons 6.352000e-01   p_joint 1.223000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM177.3_940_20000_0.0731_0.6352_0.1223.png
                gene_name: TMEM177
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 31 percent done.
TMEM178
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
TMEM178   10000 perm   2 sec   (6412 perm/sec)   p_kst 5.367000e-01   p_cons 1.519000e-01   p_joint 3.656000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM178.3_910_10000_0.5367_0.1519_0.3656.png
                gene_name: TMEM178
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
TMEM184A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
TMEM184A   10000 perm   2 sec   (6383 perm/sec)   p_kst 2.000000e-04   p_cons 8.881000e-01   p_joint 0

Joint ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
Cons ci ratio: 1.020289e-02	ci left: 8.761273e-01	ci right 8.851617e-01	k: 17614	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
TMEM184A   20000 perm   4 sec   (5644 perm/sec)   p_kst 5.500000e-04   p_cons 8.807000e-01   p_joint 3.250000e-03

Joint ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
Cons ci ratio: 8.302566e-03	ci left: 8.776877e-01	ci right 8.850382e-01	k: 26442	n:30000
KS ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
TMEM184A   30000 perm   6 sec   (5327 perm/sec)   p_kst 5.666667e-04   p_cons 8.814000e-01   p_joint 1.000000e-03

Joint ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
Cons ci ratio: 7.159123e-03	ci left: 8.791017e-01	ci right 8.854427e-01	k: 35292	n:40000
KS ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
TMEM184A   40000 perm   8 sec   (5133 perm/sec)   p_kst 5.750000e-04   p_cons 8.823000e-01   p_joint 8.250000e-04

Joint ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
Cons ci ratio: 6.361249e-03	ci left: 8.808173e-01	ci right 8.864581e-01	k: 44183	n:50000
KS ci ratio: 7.541931e-01	ci left: 3.397085e-04	ci right 7.618283e-04	k: 26	n:50000
TMEM184A   50000 perm   10 sec   (4979 perm/sec)   p_kst 5.200000e-04   p_cons 8.836600e-01   p_joint 7.600000e-04

Joint ci ratio: 6.274931e-01	ci left: 4.482221e-04	ci right 8.691969e-04	k: 38	n:60000
Cons ci ratio: 5.803943e-03	ci left: 8.811752e-01	ci right 8.863209e-01	k: 53026	n:60000
KS ci ratio: 7.277437e-01	ci left: 3.101183e-04	ci right 6.743932e-04	k: 28	n:60000
TMEM184A   60000 perm   12 sec   (4853 perm/sec)   p_kst 4.666667e-04   p_cons 8.837667e-01   p_joint 6.333333e-04

Joint ci ratio: 3.066782e-01	ci left: 1.971952e-03	ci right 2.698858e-03	k: 162	n:70000
Cons ci ratio: 5.364284e-03	ci left: 8.817200e-01	ci right 8.864767e-01	k: 61888	n:70000
KS ci ratio: 6.721064e-01	ci left: 3.245313e-04	ci right 6.619979e-04	k: 33	n:70000
TMEM184A   70000 perm   15 sec   (4743 perm/sec)   p_kst 4.714286e-04   p_cons 8.841143e-01   p_joint 2.314286e-03

Joint ci ratio: 3.275117e-01	ci left: 1.495268e-03	ci right 2.091794e-03	k: 142	n:80000
Cons ci ratio: 5.034670e-03	ci left: 8.811811e-01	ci right 8.856411e-01	k: 70674	n:80000
KS ci ratio: 6.275454e-01	ci left: 3.361595e-04	ci right 6.519169e-04	k: 38	n:80000
TMEM184A   80000 perm   17 sec   (4643 perm/sec)   p_kst 4.750000e-04   p_cons 8.834250e-01   p_joint 1.775000e-03

Joint ci ratio: 3.517819e-01	ci left: 1.135958e-03	ci right 1.630412e-03	k: 123	n:90000
Cons ci ratio: 4.753948e-03	ci left: 8.809942e-01	ci right 8.852033e-01	k: 79480	n:90000
KS ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
TMEM184A   90000 perm   20 sec   (4545 perm/sec)   p_kst 4.666667e-04   p_cons 8.831111e-01   p_joint 1.366667e-03

Joint ci ratio: 3.310668e-01	ci left: 1.168660e-03	ci right 1.641021e-03	k: 139	n:100000
Cons ci ratio: 4.501700e-03	ci left: 8.814853e-01	ci right 8.854724e-01	k: 88349	n:100000
KS ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
TMEM184A   100000 perm   22 sec   (4460 perm/sec)   p_kst 4.500000e-04   p_cons 8.834900e-01   p_joint 1.390000e-03

Joint ci ratio: 3.371713e-01	ci left: 1.020762e-03	ci right 1.442607e-03	k: 134	n:110000
Cons ci ratio: 4.284780e-03	ci left: 8.819373e-01	ci right 8.857333e-01	k: 97223	n:110000
KS ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
TMEM184A   110000 perm   25 sec   (4379 perm/sec)   p_kst 4.727273e-04   p_cons 8.838455e-01   p_joint 1.218182e-03

Joint ci ratio: 2.405367e-01	ci left: 1.942841e-03	ci right 2.481669e-03	k: 264	n:120000
Cons ci ratio: 4.103765e-03	ci left: 8.819482e-01	ci right 8.855832e-01	k: 106053	n:120000
KS ci ratio: 6.275977e-01	ci left: 2.241016e-04	ci right 4.346241e-04	k: 38	n:120000
TMEM184A   120000 perm   28 sec   (4303 perm/sec)   p_kst 3.166667e-04   p_cons 8.837750e-01   p_joint 2.200000e-03

Joint ci ratio: 2.622764e-01	ci left: 1.490584e-03	ci right 1.947488e-03	k: 222	n:130000
Cons ci ratio: 3.944941e-03	ci left: 8.819062e-01	ci right 8.853997e-01	k: 114876	n:130000
KS ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
TMEM184A   130000 perm   31 sec   (4233 perm/sec)   p_kst 3.153846e-04   p_cons 8.836615e-01   p_joint 1.707692e-03

Joint ci ratio: 2.593959e-01	ci left: 1.417485e-03	ci right 1.846437e-03	k: 227	n:140000
Cons ci ratio: 3.803894e-03	ci left: 8.818367e-01	ci right 8.852046e-01	k: 123694	n:140000
KS ci ratio: 5.716927e-01	ci left: 2.405653e-04	ci right 4.382442e-04	k: 46	n:140000
TMEM184A   140000 perm   34 sec   (4165 perm/sec)   p_kst 3.285714e-04   p_cons 8.835286e-01   p_joint 1.621429e-03

Joint ci ratio: 2.665292e-01	ci left: 1.248244e-03	ci right 1.638103e-03	k: 215	n:150000
Cons ci ratio: 3.671607e-03	ci left: 8.820803e-01	ci right 8.853315e-01	k: 132557	n:150000
KS ci ratio: 5.657108e-01	ci left: 2.302343e-04	ci right 4.166454e-04	k: 47	n:150000
TMEM184A   150000 perm   37 sec   (4099 perm/sec)   p_kst 3.133333e-04   p_cons 8.837133e-01   p_joint 1.433333e-03

Joint ci ratio: 2.560702e-01	ci left: 1.275365e-03	ci right 1.655568e-03	k: 233	n:160000
Cons ci ratio: 3.551244e-03	ci left: 8.823517e-01	ci right 8.854969e-01	k: 141429	n:160000
KS ci ratio: 5.599125e-01	ci left: 2.212043e-04	ci right 3.977370e-04	k: 48	n:160000
TMEM184A   160000 perm   40 sec   (4031 perm/sec)   p_kst 3.000000e-04   p_cons 8.839312e-01   p_joint 1.456250e-03

Joint ci ratio: 2.477395e-01	ci left: 1.288522e-03	ci right 1.658226e-03	k: 249	n:170000
Cons ci ratio: 3.445834e-03	ci left: 8.823618e-01	ci right 8.854133e-01	k: 150262	n:170000
KS ci ratio: 5.488258e-01	ci left: 2.183074e-04	ci right 3.877393e-04	k: 50	n:170000
TMEM184A   170000 perm   43 sec   (3968 perm/sec)   p_kst 2.941176e-04   p_cons 8.838941e-01   p_joint 1.464706e-03

Joint ci ratio: 2.415402e-01	ci left: 1.284732e-03	ci right 1.642744e-03	k: 262	n:180000
Cons ci ratio: 3.344661e-03	ci left: 8.826569e-01	ci right 8.856196e-01	k: 159146	n:180000
KS ci ratio: 5.435262e-01	ci left: 2.109673e-04	ci right 3.725144e-04	k: 51	n:180000
TMEM184A   180000 perm   46 sec   (3907 perm/sec)   p_kst 2.833333e-04   p_cons 8.841444e-01   p_joint 1.455556e-03

Joint ci ratio: 2.353576e-01	ci left: 1.286398e-03	ci right 1.634361e-03	k: 276	n:190000
Cons ci ratio: 3.253147e-03	ci left: 8.828427e-01	ci right 8.857246e-01	k: 168015	n:190000
KS ci ratio: 5.059886e-01	ci left: 2.363952e-04	ci right 4.005383e-04	k: 59	n:190000
TMEM184A   190000 perm   49 sec   (3848 perm/sec)   p_kst 3.105263e-04   p_cons 8.842895e-01   p_joint 1.452632e-03

Joint ci ratio: 2.292326e-01	ci left: 1.292714e-03	ci right 1.631999e-03	k: 291	n:200000
Cons ci ratio: 3.168905e-03	ci left: 8.830007e-01	ci right 8.858082e-01	k: 176882	n:200000
KS ci ratio: 4.977621e-01	ci left: 2.333086e-04	ci right 3.917683e-04	k: 61	n:200000
TMEM184A   200000 perm   53 sec   (3792 perm/sec)   p_kst 3.050000e-04   p_cons 8.844100e-01   p_joint 1.455000e-03

Joint ci ratio: 1.958128e-01	ci left: 1.718273e-03	ci right 2.095688e-03	k: 399	n:210000
Cons ci ratio: 3.093117e-03	ci left: 8.829960e-01	ci right 8.857362e-01	k: 185718	n:210000
KS ci ratio: 4.824417e-01	ci left: 2.388918e-04	ci right 3.944967e-04	k: 65	n:210000
TMEM184A   210000 perm   56 sec   (3739 perm/sec)   p_kst 3.095238e-04   p_cons 8.843714e-01   p_joint 1.900000e-03

Joint ci ratio: 1.910933e-01	ci left: 1.726677e-03	ci right 2.095735e-03	k: 419	n:220000
Cons ci ratio: 3.020570e-03	ci left: 8.831251e-01	ci right 8.858011e-01	k: 194583	n:220000
KS ci ratio: 4.684540e-01	ci left: 2.440358e-04	ci right 3.969104e-04	k: 69	n:220000
TMEM184A   220000 perm   60 sec   (3687 perm/sec)   p_kst 3.136364e-04   p_cons 8.844682e-01   p_joint 1.904545e-03

Joint ci ratio: 1.877714e-01	ci left: 1.713727e-03	ci right 2.072925e-03	k: 434	n:230000
Cons ci ratio: 2.953086e-03	ci left: 8.832304e-01	ci right 8.858468e-01	k: 203445	n:230000
KS ci ratio: 4.619031e-01	ci left: 2.411015e-04	ci right 3.893619e-04	k: 71	n:230000
TMEM184A   230000 perm   63 sec   (3636 perm/sec)   p_kst 3.086957e-04   p_cons 8.845435e-01   p_joint 1.886957e-03

Joint ci ratio: 1.871335e-01	ci left: 1.654231e-03	ci right 1.999645e-03	k: 437	n:240000
Cons ci ratio: 2.890756e-03	ci left: 8.832690e-01	ci right 8.858301e-01	k: 212293	n:240000
KS ci ratio: 4.525709e-01	ci left: 2.421155e-04	ci right 3.870690e-04	k: 74	n:240000
TMEM184A   240000 perm   67 sec   (3589 perm/sec)   p_kst 3.083333e-04   p_cons 8.845542e-01   p_joint 1.820833e-03

Joint ci ratio: 1.776415e-01	ci left: 1.771310e-03	ci right 2.120398e-03	k: 485	n:250000
Cons ci ratio: 2.743810e-03	ci left: 8.896553e-01	ci right 8.921036e-01	k: 222721	n:250000
KS ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
TMEM184A   250000 perm   71 sec   (3542 perm/sec)   p_kst 3.120000e-04   p_cons 8.908840e-01   p_joint 1.940000e-03

Joint ci ratio: 1.490334e-01	ci left: 2.456030e-03	ci right 2.855186e-03	k: 689	n:260000
Cons ci ratio: 2.691156e-03	ci left: 8.896335e-01	ci right 8.920347e-01	k: 231618	n:260000
KS ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
TMEM184A   260000 perm   74 sec   (3496 perm/sec)   p_kst 3.153846e-04   p_cons 8.908385e-01   p_joint 2.650000e-03

Joint ci ratio: 1.454899e-01	ci left: 2.486355e-03	ci right 2.879997e-03	k: 723	n:270000
Cons ci ratio: 2.642075e-03	ci left: 8.895654e-01	ci right 8.919225e-01	k: 240502	n:270000
KS ci ratio: 4.178045e-01	ci left: 2.580946e-04	ci right 3.974450e-04	k: 87	n:270000
TMEM184A   270000 perm   78 sec   (3452 perm/sec)   p_kst 3.222222e-04   p_cons 8.907481e-01   p_joint 2.677778e-03

Joint ci ratio: 1.675966e-01	ci left: 1.786563e-03	ci right 2.116739e-03	k: 545	n:280000
Cons ci ratio: 2.596392e-03	ci left: 8.894416e-01	ci right 8.917575e-01	k: 249369	n:280000
KS ci ratio: 4.108601e-01	ci left: 2.584742e-04	ci right 3.950757e-04	k: 90	n:280000
TMEM184A   280000 perm   82 sec   (3403 perm/sec)   p_kst 3.214286e-04   p_cons 8.906036e-01   p_joint 1.946429e-03

Joint ci ratio: 1.640290e-01	ci left: 1.804284e-03	ci right 2.129936e-03	k: 569	n:290000
Cons ci ratio: 2.552002e-03	ci left: 8.894029e-01	ci right 8.916790e-01	k: 258258	n:290000
KS ci ratio: 4.021169e-01	ci left: 2.619441e-04	ci right 3.966484e-04	k: 94	n:290000
TMEM184A   290000 perm   86 sec   (3362 perm/sec)   p_kst 3.241379e-04   p_cons 8.905448e-01   p_joint 1.962069e-03

Joint ci ratio: 1.652000e-01	ci left: 1.718566e-03	ci right 2.031182e-03	k: 561	n:300000
Cons ci ratio: 2.508355e-03	ci left: 8.894809e-01	ci right 8.917182e-01	k: 267181	n:300000
KS ci ratio: 3.899883e-01	ci left: 2.712213e-04	ci right 4.054080e-04	k: 100	n:300000
TMEM184A   300000 perm   90 sec   (3320 perm/sec)   p_kst 3.333333e-04   p_cons 8.906033e-01   p_joint 1.870000e-03

Joint ci ratio: 1.627572e-01	ci left: 1.715717e-03	ci right 2.022747e-03	k: 578	n:310000
Cons ci ratio: 2.468261e-03	ci left: 8.894441e-01	ci right 8.916454e-01	k: 276070	n:310000
KS ci ratio: 3.806783e-01	ci left: 2.770391e-04	ci right 4.100141e-04	k: 105	n:310000
TMEM184A   310000 perm   95 sec   (3280 perm/sec)   p_kst 3.387097e-04   p_cons 8.905484e-01   p_joint 1.864516e-03

Joint ci ratio: 1.683912e-01	ci left: 1.548259e-03	ci right 1.835886e-03	k: 540	n:320000
Cons ci ratio: 2.431898e-03	ci left: 8.892592e-01	ci right 8.914275e-01	k: 284911	n:320000
KS ci ratio: 3.736925e-01	ci left: 2.796967e-04	ci right 4.108807e-04	k: 109	n:320000
TMEM184A   320000 perm   99 sec   (3240 perm/sec)   p_kst 3.406250e-04   p_cons 8.903469e-01   p_joint 1.687500e-03

Joint ci ratio: 1.687082e-01	ci left: 1.495533e-03	ci right 1.773942e-03	k: 538	n:330000
Cons ci ratio: 2.394673e-03	ci left: 8.892836e-01	ci right 8.914187e-01	k: 293817	n:330000
KS ci ratio: 3.654776e-01	ci left: 2.849656e-04	ci right 4.149820e-04	k: 114	n:330000
TMEM184A   330000 perm   103 sec   (3202 perm/sec)   p_kst 3.454545e-04   p_cons 8.903545e-01   p_joint 1.630303e-03

Joint ci ratio: 1.661088e-01	ci left: 1.499452e-03	ci right 1.773860e-03	k: 555	n:340000
Cons ci ratio: 2.360066e-03	ci left: 8.892270e-01	ci right 8.913310e-01	k: 302696	n:340000
KS ci ratio: 3.548359e-01	ci left: 2.953103e-04	ci right 4.252193e-04	k: 121	n:340000
TMEM184A   340000 perm   107 sec   (3164 perm/sec)   p_kst 3.558824e-04   p_cons 8.902824e-01   p_joint 1.632353e-03

Joint ci ratio: 1.647822e-01	ci left: 1.481259e-03	ci right 1.749958e-03	k: 564	n:350000
Cons ci ratio: 2.326372e-03	ci left: 8.892198e-01	ci right 8.912937e-01	k: 311591	n:350000
KS ci ratio: 3.548378e-01	ci left: 2.868726e-04	ci right 4.130705e-04	k: 121	n:350000
TMEM184A   350000 perm   112 sec   (3126 perm/sec)   p_kst 3.457143e-04   p_cons 8.902600e-01   p_joint 1.611429e-03

Joint ci ratio: 1.719446e-01	ci left: 1.317707e-03	ci right 1.568206e-03	k: 518	n:360000
Cons ci ratio: 2.293103e-03	ci left: 8.892969e-01	ci right 8.913412e-01	k: 320516	n:360000
KS ci ratio: 3.533936e-01	ci left: 2.814344e-04	ci right 4.046205e-04	k: 122	n:360000
TMEM184A   360000 perm   117 sec   (3089 perm/sec)   p_kst 3.388889e-04   p_cons 8.903222e-01   p_joint 1.438889e-03

Joint ci ratio: 1.696715e-01	ci left: 1.318314e-03	ci right 1.565275e-03	k: 532	n:370000
Cons ci ratio: 2.261158e-03	ci left: 8.893754e-01	ci right 8.913914e-01	k: 329443	n:370000
KS ci ratio: 3.533953e-01	ci left: 2.738279e-04	ci right 3.936852e-04	k: 122	n:370000
TMEM184A   370000 perm   121 sec   (3053 perm/sec)   p_kst 3.297297e-04   p_cons 8.903865e-01   p_joint 1.437838e-03

Joint ci ratio: 1.676397e-01	ci left: 1.316388e-03	ci right 1.559737e-03	k: 545	n:380000
Cons ci ratio: 2.230421e-03	ci left: 8.894579e-01	ci right 8.914466e-01	k: 338373	n:380000
KS ci ratio: 3.505573e-01	ci left: 2.714197e-04	ci right 3.890518e-04	k: 124	n:380000
TMEM184A   380000 perm   126 sec   (3017 perm/sec)   p_kst 3.263158e-04   p_cons 8.904553e-01   p_joint 1.434211e-03

Joint ci ratio: 1.653832e-01	ci left: 1.319493e-03	ci right 1.559807e-03	k: 560	n:390000
Cons ci ratio: 2.201540e-03	ci left: 8.894797e-01	ci right 8.914427e-01	k: 347281	n:390000
KS ci ratio: 3.464250e-01	ci left: 2.714793e-04	ci right 3.874391e-04	k: 127	n:390000
TMEM184A   390000 perm   131 sec   (2982 perm/sec)   p_kst 3.256410e-04   p_cons 8.904641e-01   p_joint 1.435897e-03

Joint ci ratio: 1.653862e-01	ci left: 1.286504e-03	ci right 1.520814e-03	k: 560	n:400000
Cons ci ratio: 2.173056e-03	ci left: 8.895634e-01	ci right 8.915010e-01	k: 356214	n:400000
KS ci ratio: 3.411355e-01	ci left: 2.738291e-04	ci right 3.886130e-04	k: 131	n:400000
TMEM184A   400000 perm   136 sec   (2948 perm/sec)   p_kst 3.275000e-04   p_cons 8.905350e-01   p_joint 1.400000e-03

Joint ci ratio: 1.627944e-01	ci left: 1.297226e-03	ci right 1.529424e-03	k: 578	n:410000
Cons ci ratio: 2.146830e-03	ci left: 8.895353e-01	ci right 8.914494e-01	k: 365103	n:410000
KS ci ratio: 3.385807e-01	ci left: 2.716120e-04	ci right 3.844276e-04	k: 133	n:410000
TMEM184A   410000 perm   141 sec   (2915 perm/sec)   p_kst 3.243902e-04   p_cons 8.904951e-01   p_joint 1.409756e-03

Joint ci ratio: 1.609972e-01	ci left: 1.296038e-03	ci right 1.525215e-03	k: 591	n:420000
Cons ci ratio: 2.121998e-03	ci left: 8.894657e-01	ci right 8.913575e-01	k: 373974	n:420000
KS ci ratio: 3.312449e-01	ci left: 2.782298e-04	ci right 3.907568e-04	k: 139	n:420000
TMEM184A   420000 perm   146 sec   (2886 perm/sec)   p_kst 3.309524e-04   p_cons 8.904143e-01   p_joint 1.407143e-03

Joint ci ratio: 1.595226e-01	ci left: 1.290453e-03	ci right 1.516351e-03	k: 602	n:430000
Cons ci ratio: 2.097706e-03	ci left: 8.894275e-01	ci right 8.912975e-01	k: 382857	n:430000
KS ci ratio: 3.266116e-01	ci left: 2.802937e-04	ci right 3.917371e-04	k: 143	n:430000
TMEM184A   430000 perm   150 sec   (2858 perm/sec)   p_kst 3.325581e-04   p_cons 8.903651e-01   p_joint 1.400000e-03

Joint ci ratio: 1.822789e-01	ci left: 9.542999e-04	ci right 1.147822e-03	k: 461	n:440000
Cons ci ratio: 2.073795e-03	ci left: 8.894322e-01	ci right 8.912808e-01	k: 391758	n:440000
KS ci ratio: 3.243673e-01	ci left: 2.780974e-04	ci right 3.877496e-04	k: 145	n:440000
TMEM184A   440000 perm   156 sec   (2829 perm/sec)   p_kst 3.295455e-04   p_cons 8.903591e-01   p_joint 1.047727e-03

Joint ci ratio: 1.882923e-01	ci left: 8.716335e-04	ci right 1.054890e-03	k: 432	n:450000
Cons ci ratio: 2.050544e-03	ci left: 8.894502e-01	ci right 8.912781e-01	k: 400665	n:450000
KS ci ratio: 3.189512e-01	ci left: 2.821317e-04	ci right 3.911379e-04	k: 150	n:450000
TMEM184A   450000 perm   161 sec   (2801 perm/sec)   p_kst 3.333333e-04   p_cons 8.903667e-01   p_joint 9.600000e-04

Joint ci ratio: 1.855272e-01	ci left: 8.796239e-04	ci right 1.061539e-03	k: 445	n:460000
Cons ci ratio: 2.028532e-03	ci left: 8.894217e-01	ci right 8.912299e-01	k: 409551	n:460000
KS ci ratio: 3.108222e-01	ci left: 2.920159e-04	ci right 4.013956e-04	k: 158	n:460000
TMEM184A   460000 perm   166 sec   (2773 perm/sec)   p_kst 3.434783e-04   p_cons 8.903283e-01   p_joint 9.673913e-04

Joint ci ratio: 1.838856e-01	ci left: 8.771426e-04	ci right 1.056760e-03	k: 453	n:470000
Cons ci ratio: 2.006273e-03	ci left: 8.894864e-01	ci right 8.912748e-01	k: 418480	n:470000
KS ci ratio: 3.069845e-01	ci left: 2.936539e-04	ci right 4.020234e-04	k: 162	n:470000
TMEM184A   470000 perm   171 sec   (2746 perm/sec)   p_kst 3.446809e-04   p_cons 8.903830e-01   p_joint 9.638298e-04

Joint ci ratio: 1.824847e-01	ci left: 8.727833e-04	ci right 1.049996e-03	k: 460	n:480000
Cons ci ratio: 1.985303e-03	ci left: 8.894920e-01	ci right 8.912617e-01	k: 427382	n:480000
KS ci ratio: 3.032856e-01	ci left: 2.952315e-04	ci right 4.026173e-04	k: 166	n:480000
TMEM184A   480000 perm   177 sec   (2719 perm/sec)   p_kst 3.458333e-04   p_cons 8.903792e-01   p_joint 9.583333e-04

Joint ci ratio: 1.803455e-01	ci left: 8.764011e-04	ci right 1.052035e-03	k: 471	n:490000
Cons ci ratio: 1.963826e-03	ci left: 8.896121e-01	ci right 8.913629e-01	k: 436340	n:490000
KS ci ratio: 2.988444e-01	ci left: 2.986399e-04	ci right 4.053729e-04	k: 171	n:490000
TMEM184A   490000 perm   182 sec   (2692 perm/sec)   p_kst 3.489796e-04   p_cons 8.904898e-01   p_joint 9.612245e-04

Joint ci ratio: 1.795872e-01	ci left: 8.665123e-04	ci right 1.039355e-03	k: 475	n:500000
Cons ci ratio: 1.943369e-03	ci left: 8.896934e-01	ci right 8.914261e-01	k: 445281	n:500000
KS ci ratio: 2.971224e-01	ci left: 2.963681e-04	ci right 4.015637e-04	k: 173	n:500000
TMEM184A   500000 perm   188 sec   (2665 perm/sec)   p_kst 3.460000e-04   p_cons 8.905620e-01   p_joint 9.500000e-04

Joint ci ratio: 1.786521e-01	ci left: 8.588859e-04	ci right 1.029218e-03	k: 480	n:510000
Cons ci ratio: 1.924679e-03	ci left: 8.896555e-01	ci right 8.913714e-01	k: 454163	n:510000
KS ci ratio: 2.954298e-01	ci left: 2.941870e-04	ci right 3.979022e-04	k: 175	n:510000
TMEM184A   510000 perm   193 sec   (2638 perm/sec)   p_kst 3.431373e-04   p_cons 8.905157e-01   p_joint 9.411765e-04

Joint ci ratio: 1.464987e-01	ci left: 1.274257e-03	ci right 1.477517e-03	k: 714	n:520000
Cons ci ratio: 1.905408e-03	ci left: 8.897330e-01	ci right 8.914318e-01	k: 463104	n:520000
KS ci ratio: 2.937658e-01	ci left: 2.920915e-04	ci right 3.943799e-04	k: 177	n:520000
TMEM184A   520000 perm   199 sec   (2612 perm/sec)   p_kst 3.403846e-04   p_cons 8.905846e-01   p_joint 1.373077e-03

Joint ci ratio: 1.448863e-01	ci left: 1.279303e-03	ci right 1.480928e-03	k: 730	n:530000
Cons ci ratio: 1.887509e-03	ci left: 8.897244e-01	ci right 8.914072e-01	k: 472001	n:530000
KS ci ratio: 2.905196e-01	ci left: 2.935745e-04	ci right 3.950374e-04	k: 181	n:530000
TMEM184A   530000 perm   205 sec   (2586 perm/sec)   p_kst 3.415094e-04   p_cons 8.905679e-01   p_joint 1.377358e-03

Joint ci ratio: 1.454872e-01	ci left: 1.244903e-03	ci right 1.441990e-03	k: 724	n:540000
Cons ci ratio: 1.870033e-03	ci left: 8.897236e-01	ci right 8.913908e-01	k: 480902	n:540000
KS ci ratio: 2.889367e-01	ci left: 2.915725e-04	ci right 3.916940e-04	k: 183	n:540000
TMEM184A   540000 perm   211 sec   (2560 perm/sec)   p_kst 3.388889e-04   p_cons 8.905593e-01   p_joint 1.340741e-03

Joint ci ratio: 1.438105e-01	ci left: 1.252060e-03	ci right 1.447799e-03	k: 741	n:550000
Cons ci ratio: 1.853155e-03	ci left: 8.897101e-01	ci right 8.913622e-01	k: 489796	n:550000
KS ci ratio: 2.850888e-01	ci left: 2.947079e-04	ci right 3.943157e-04	k: 188	n:550000
TMEM184A   550000 perm   217 sec   (2531 perm/sec)   p_kst 3.418182e-04   p_cons 8.905382e-01   p_joint 1.347273e-03

Joint ci ratio: 1.422843e-01	ci left: 1.257250e-03	ci right 1.451539e-03	k: 757	n:560000
Cons ci ratio: 1.836894e-03	ci left: 8.896792e-01	ci right 8.913167e-01	k: 498680	n:560000
KS ci ratio: 2.806679e-01	ci left: 2.993996e-04	ci right 3.987465e-04	k: 194	n:560000
TMEM184A   560000 perm   223 sec   (2506 perm/sec)   p_kst 3.464286e-04   p_cons 8.905000e-01   p_joint 1.351786e-03

Joint ci ratio: 1.420984e-01	ci left: 1.238577e-03	ci right 1.429708e-03	k: 759	n:570000
Cons ci ratio: 1.820791e-03	ci left: 8.896777e-01	ci right 8.913008e-01	k: 507580	n:570000
KS ci ratio: 2.785336e-01	ci left: 2.990412e-04	ci right 3.973822e-04	k: 197	n:570000
TMEM184A   570000 perm   230 sec   (2484 perm/sec)   p_kst 3.456140e-04   p_cons 8.904912e-01   p_joint 1.331579e-03

Joint ci ratio: 1.496869e-01	ci left: 1.092622e-03	ci right 1.271041e-03	k: 684	n:580000
Cons ci ratio: 1.805568e-03	ci left: 8.896261e-01	ci right 8.912355e-01	k: 516451	n:580000
KS ci ratio: 2.757620e-01	ci left: 3.003026e-04	ci right 3.979054e-04	k: 201	n:580000
TMEM184A   580000 perm   236 sec   (2455 perm/sec)   p_kst 3.465517e-04   p_cons 8.904328e-01   p_joint 1.179310e-03

Joint ci ratio: 1.497979e-01	ci left: 1.072471e-03	ci right 1.247741e-03	k: 683	n:590000
Cons ci ratio: 1.790097e-03	ci left: 8.896443e-01	ci right 8.912400e-01	k: 525362	n:590000
KS ci ratio: 2.717550e-01	ci left: 3.046844e-04	ci right 4.020269e-04	k: 207	n:590000
TMEM184A   590000 perm   243 sec   (2432 perm/sec)   p_kst 3.508475e-04   p_cons 8.904441e-01   p_joint 1.157627e-03

Joint ci ratio: 1.481815e-01	ci left: 1.078665e-03	ci right 1.252876e-03	k: 698	n:600000
Cons ci ratio: 1.774941e-03	ci left: 8.896704e-01	ci right 8.912525e-01	k: 534278	n:600000
KS ci ratio: 2.691789e-01	ci left: 3.058210e-04	ci right 4.024440e-04	k: 211	n:600000
TMEM184A   600000 perm   249 sec   (2411 perm/sec)   p_kst 3.516667e-04   p_cons 8.904633e-01   p_joint 1.163333e-03

Joint ci ratio: 1.625514e-01	ci left: 8.750357e-04	ci right 1.031406e-03	k: 580	n:610000
Cons ci ratio: 1.761126e-03	ci left: 8.895887e-01	ci right 8.911584e-01	k: 543129	n:610000
KS ci ratio: 2.679185e-01	ci left: 3.038654e-04	ci right 3.993455e-04	k: 213	n:610000
TMEM184A   610000 perm   255 sec   (2390 perm/sec)   p_kst 3.491803e-04   p_cons 8.903754e-01   p_joint 9.508197e-04

Joint ci ratio: 1.610339e-01	ci left: 8.779459e-04	ci right 1.033230e-03	k: 591	n:620000
Cons ci ratio: 1.747973e-03	ci left: 8.894709e-01	ci right 8.910286e-01	k: 551956	n:620000
KS ci ratio: 2.648421e-01	ci left: 3.064905e-04	ci right 4.015062e-04	k: 218	n:620000
TMEM184A   620000 perm   262 sec   (2369 perm/sec)   p_kst 3.516129e-04   p_cons 8.902516e-01   p_joint 9.532258e-04

Joint ci ratio: 1.664715e-01	ci left: 8.061615e-04	ci right 9.540458e-04	k: 553	n:630000
Cons ci ratio: 1.733671e-03	ci left: 8.895193e-01	ci right 8.910644e-01	k: 560885	n:630000
KS ci ratio: 2.630466e-01	ci left: 3.060724e-04	ci right 4.002093e-04	k: 221	n:630000
TMEM184A   630000 perm   268 sec   (2350 perm/sec)   p_kst 3.507937e-04   p_cons 8.902937e-01   p_joint 8.777778e-04

Joint ci ratio: 1.652825e-01	ci left: 8.055462e-04	ci right 9.521573e-04	k: 561	n:640000
Cons ci ratio: 1.720128e-03	ci left: 8.895193e-01	ci right 8.910522e-01	k: 569784	n:640000
KS ci ratio: 2.612872e-01	ci left: 3.056695e-04	ci right 3.989509e-04	k: 224	n:640000
TMEM184A   640000 perm   275 sec   (2329 perm/sec)   p_kst 3.500000e-04   p_cons 8.902875e-01   p_joint 8.765625e-04

Joint ci ratio: 1.331182e-01	ci left: 1.243605e-03	ci right 1.422425e-03	k: 865	n:650000
Cons ci ratio: 1.707139e-03	ci left: 8.894915e-01	ci right 8.910128e-01	k: 578665	n:650000
KS ci ratio: 2.589951e-01	ci left: 3.067195e-04	ci right 3.993674e-04	k: 228	n:650000
TMEM184A   650000 perm   281 sec   (2310 perm/sec)   p_kst 3.507692e-04   p_cons 8.902538e-01   p_joint 1.330769e-03

Joint ci ratio: 1.321301e-01	ci left: 1.243806e-03	ci right 1.421223e-03	k: 878	n:660000
Cons ci ratio: 1.693782e-03	ci left: 8.895405e-01	ci right 8.910500e-01	k: 587596	n:660000
KS ci ratio: 2.578717e-01	ci left: 3.049062e-04	ci right 3.965426e-04	k: 230	n:660000
TMEM184A   660000 perm   288 sec   (2290 perm/sec)   p_kst 3.484848e-04   p_cons 8.902970e-01   p_joint 1.330303e-03

Joint ci ratio: 1.310903e-01	ci left: 1.245449e-03	ci right 1.421594e-03	k: 892	n:670000
Cons ci ratio: 1.681428e-03	ci left: 8.895073e-01	ci right 8.910057e-01	k: 596473	n:670000
KS ci ratio: 2.562135e-01	ci left: 3.045445e-04	ci right 3.953896e-04	k: 233	n:670000
TMEM184A   670000 perm   295 sec   (2272 perm/sec)   p_kst 3.477612e-04   p_cons 8.902582e-01   p_joint 1.331343e-03

Joint ci ratio: 1.300745e-01	ci left: 1.247050e-03	ci right 1.421949e-03	k: 906	n:680000
Cons ci ratio: 1.668838e-03	ci left: 8.895342e-01	ci right 8.910213e-01	k: 605390	n:680000
KS ci ratio: 2.540512e-01	ci left: 3.055722e-04	ci right 3.958327e-04	k: 237	n:680000
TMEM184A   680000 perm   302 sec   (2255 perm/sec)   p_kst 3.485294e-04   p_cons 8.902794e-01   p_joint 1.332353e-03

Joint ci ratio: 1.295761e-01	ci left: 1.238792e-03	ci right 1.411815e-03	k: 913	n:690000
Cons ci ratio: 1.657521e-03	ci left: 8.894425e-01	ci right 8.909194e-01	k: 614226	n:690000
KS ci ratio: 2.524651e-01	ci left: 3.052155e-04	ci right 3.947192e-04	k: 240	n:690000
TMEM184A   690000 perm   308 sec   (2237 perm/sec)   p_kst 3.478261e-04   p_cons 8.901826e-01   p_joint 1.323188e-03

Joint ci ratio: 1.311676e-01	ci left: 1.190689e-03	ci right 1.359196e-03	k: 891	n:700000
Cons ci ratio: 1.645841e-03	ci left: 8.894237e-01	ci right 8.908902e-01	k: 623111	n:700000
KS ci ratio: 2.519434e-01	ci left: 3.021935e-04	ci right 3.905991e-04	k: 241	n:700000
TMEM184A   700000 perm   315 sec   (2219 perm/sec)   p_kst 3.442857e-04   p_cons 8.901586e-01   p_joint 1.272857e-03

Joint ci ratio: 1.360676e-01	ci left: 1.088148e-03	ci right 1.248361e-03	k: 828	n:710000
Cons ci ratio: 1.633711e-03	ci left: 8.894888e-01	ci right 8.909446e-01	k: 632055	n:710000
KS ci ratio: 2.503962e-01	ci left: 3.018966e-04	ci right 3.895885e-04	k: 244	n:710000
TMEM184A   710000 perm   322 sec   (2203 perm/sec)   p_kst 3.436620e-04   p_cons 8.902183e-01   p_joint 1.166197e-03

Joint ci ratio: 1.268305e-01	ci left: 1.240949e-03	ci right 1.410326e-03	k: 953	n:720000
Cons ci ratio: 1.622627e-03	ci left: 8.894575e-01	ci right 8.909033e-01	k: 640931	n:720000
KS ci ratio: 2.488772e-01	ci left: 3.016096e-04	ci right 3.886044e-04	k: 247	n:720000
TMEM184A   720000 perm   329 sec   (2187 perm/sec)   p_kst 3.430556e-04   p_cons 8.901819e-01   p_joint 1.323611e-03

Joint ci ratio: 1.298656e-01	ci left: 1.165608e-03	ci right 1.328802e-03	k: 909	n:730000
Cons ci ratio: 1.611428e-03	ci left: 8.894682e-01	ci right 8.909040e-01	k: 649837	n:730000
KS ci ratio: 2.468940e-01	ci left: 3.026171e-04	ci right 3.891001e-04	k: 251	n:730000
TMEM184A   730000 perm   337 sec   (2169 perm/sec)   p_kst 3.438356e-04   p_cons 8.901877e-01   p_joint 1.245205e-03

Joint ci ratio: 1.283919e-01	ci left: 1.177319e-03	ci right 1.340139e-03	k: 930	n:740000
Cons ci ratio: 1.600291e-03	ci left: 8.894990e-01	ci right 8.909249e-01	k: 658758	n:740000
KS ci ratio: 2.449575e-01	ci left: 3.036000e-04	ci right 3.895798e-04	k: 255	n:740000
TMEM184A   740000 perm   344 sec   (2152 perm/sec)   p_kst 3.445946e-04   p_cons 8.902135e-01   p_joint 1.256757e-03

Joint ci ratio: 1.277081e-01	ci left: 1.174527e-03	ci right 1.336031e-03	k: 940	n:750000
Cons ci ratio: 1.589306e-03	ci left: 8.895384e-01	ci right 8.909546e-01	k: 667686	n:750000
KS ci ratio: 2.435347e-01	ci left: 3.033072e-04	ci right 3.886298e-04	k: 258	n:750000
TMEM184A   750000 perm   351 sec   (2135 perm/sec)   p_kst 3.440000e-04   p_cons 8.902480e-01   p_joint 1.253333e-03

Joint ci ratio: 1.266357e-01	ci left: 1.179456e-03	ci right 1.340174e-03	k: 956	n:760000
Cons ci ratio: 1.579172e-03	ci left: 8.894989e-01	ci right 8.909060e-01	k: 676555	n:760000
KS ci ratio: 2.403084e-01	ci left: 3.079686e-04	ci right 3.932839e-04	k: 265	n:760000
TMEM184A   760000 perm   359 sec   (2119 perm/sec)   p_kst 3.486842e-04   p_cons 8.902039e-01   p_joint 1.257895e-03

Joint ci ratio: 1.298698e-01	ci left: 1.105055e-03	ci right 1.259776e-03	k: 909	n:770000
Cons ci ratio: 1.568467e-03	ci left: 8.895556e-01	ci right 8.909532e-01	k: 685497	n:770000
KS ci ratio: 2.394103e-01	ci left: 3.064103e-04	ci right 3.909295e-04	k: 267	n:770000
TMEM184A   770000 perm   366 sec   (2103 perm/sec)   p_kst 3.467532e-04   p_cons 8.902558e-01   p_joint 1.180519e-03

Joint ci ratio: 1.289519e-01	ci left: 1.107015e-03	ci right 1.260831e-03	k: 922	n:780000
Cons ci ratio: 1.557905e-03	ci left: 8.896198e-01	ci right 8.910081e-01	k: 694446	n:780000
KS ci ratio: 2.376433e-01	ci left: 3.073037e-04	ci right 3.913517e-04	k: 271	n:780000
TMEM184A   780000 perm   374 sec   (2087 perm/sec)   p_kst 3.474359e-04   p_cons 8.903154e-01   p_joint 1.182051e-03

Joint ci ratio: 1.286741e-01	ci left: 1.097902e-03	ci right 1.250098e-03	k: 926	n:790000
Cons ci ratio: 1.548126e-03	ci left: 8.896101e-01	ci right 8.909896e-01	k: 703338	n:790000
KS ci ratio: 2.372080e-01	ci left: 3.046043e-04	ci right 3.877389e-04	k: 272	n:790000
TMEM184A   790000 perm   381 sec   (2072 perm/sec)   p_kst 3.443038e-04   p_cons 8.903013e-01   p_joint 1.172152e-03

Joint ci ratio: 1.277811e-01	ci left: 1.099907e-03	ci right 1.251243e-03	k: 939	n:800000
Cons ci ratio: 1.538429e-03	ci left: 8.896131e-01	ci right 8.909840e-01	k: 712240	n:800000
KS ci ratio: 2.354890e-01	ci left: 3.055007e-04	ci right 3.881877e-04	k: 276	n:800000
TMEM184A   800000 perm   389 sec   (2056 perm/sec)   p_kst 3.450000e-04   p_cons 8.903000e-01   p_joint 1.173750e-03

Joint ci ratio: 1.269065e-01	ci left: 1.101866e-03	ci right 1.252355e-03	k: 952	n:810000
Cons ci ratio: 1.529309e-03	ci left: 8.895654e-01	ci right 8.909281e-01	k: 721101	n:810000
KS ci ratio: 2.346437e-01	ci left: 3.040528e-04	ci right 3.860096e-04	k: 278	n:810000
TMEM184A   810000 perm   397 sec   (2041 perm/sec)   p_kst 3.432099e-04   p_cons 8.902481e-01   p_joint 1.175309e-03

Joint ci ratio: 1.260495e-01	ci left: 1.103780e-03	ci right 1.253438e-03	k: 965	n:820000
Cons ci ratio: 1.520368e-03	ci left: 8.895164e-01	ci right 8.908711e-01	k: 729960	n:820000
KS ci ratio: 2.321603e-01	ci left: 3.072341e-04	ci right 3.890462e-04	k: 284	n:820000
TMEM184A   820000 perm   405 sec   (2026 perm/sec)   p_kst 3.463415e-04   p_cons 8.901951e-01   p_joint 1.176829e-03

Joint ci ratio: 1.286777e-01	ci left: 1.044989e-03	ci right 1.189854e-03	k: 926	n:830000
Cons ci ratio: 1.511795e-03	ci left: 8.894409e-01	ci right 8.907877e-01	k: 738796	n:830000
KS ci ratio: 2.317544e-01	ci left: 3.046673e-04	ci right 3.856337e-04	k: 285	n:830000
TMEM184A   830000 perm   413 sec   (2012 perm/sec)   p_kst 3.433735e-04   p_cons 8.901157e-01   p_joint 1.115663e-03

Joint ci ratio: 1.292380e-01	ci left: 1.023331e-03	ci right 1.165859e-03	k: 918	n:840000
Cons ci ratio: 1.502634e-03	ci left: 8.894626e-01	ci right 8.908013e-01	k: 747712	n:840000
KS ci ratio: 2.313506e-01	ci left: 3.021617e-04	ci right 3.823023e-04	k: 286	n:840000
TMEM184A   840000 perm   421 sec   (1996 perm/sec)   p_kst 3.404762e-04   p_cons 8.901333e-01   p_joint 1.092857e-03

Joint ci ratio: 1.280586e-01	ci left: 1.030649e-03	ci right 1.172786e-03	k: 935	n:850000
Cons ci ratio: 1.493592e-03	ci left: 8.894898e-01	ci right 8.908205e-01	k: 756633	n:850000
KS ci ratio: 2.289692e-01	ci left: 3.052587e-04	ci right 3.852697e-04	k: 292	n:850000
TMEM184A   850000 perm   429 sec   (1982 perm/sec)   p_kst 3.435294e-04   p_cons 8.901565e-01   p_joint 1.100000e-03

Joint ci ratio: 1.272454e-01	ci left: 1.032172e-03	ci right 1.173548e-03	k: 947	n:860000
Cons ci ratio: 1.485144e-03	ci left: 8.894592e-01	ci right 8.907823e-01	k: 765505	n:860000
KS ci ratio: 2.270400e-01	ci left: 3.071911e-04	ci right 3.869352e-04	k: 297	n:860000
TMEM184A   860000 perm   437 sec   (1968 perm/sec)   p_kst 3.453488e-04   p_cons 8.901221e-01   p_joint 1.101163e-03

Joint ci ratio: 1.297360e-01	ci left: 9.802571e-04	ci right 1.117353e-03	k: 911	n:870000
Cons ci ratio: 1.476707e-03	ci left: 8.894467e-01	ci right 8.907622e-01	k: 774392	n:870000
KS ci ratio: 2.262822e-01	ci left: 3.058285e-04	ci right 3.849169e-04	k: 299	n:870000
TMEM184A   870000 perm   445 sec   (1954 perm/sec)   p_kst 3.436782e-04   p_cons 8.901057e-01   p_joint 1.047126e-03

Joint ci ratio: 1.107069e-01	ci left: 1.343948e-03	ci right 1.502545e-03	k: 1251	n:880000
Cons ci ratio: 1.468259e-03	ci left: 8.894549e-01	ci right 8.907630e-01	k: 783297	n:880000
KS ci ratio: 2.244195e-01	ci left: 3.077143e-04	ci right 3.865448e-04	k: 304	n:880000
TMEM184A   880000 perm   454 sec   (1940 perm/sec)   p_kst 3.454545e-04   p_cons 8.901102e-01   p_joint 1.421591e-03

Joint ci ratio: 1.154193e-01	ci left: 1.219660e-03	ci right 1.370133e-03	k: 1151	n:890000
Cons ci ratio: 1.459938e-03	ci left: 8.894653e-01	ci right 8.907659e-01	k: 792204	n:890000
KS ci ratio: 2.233240e-01	ci left: 3.074386e-04	ci right 3.857611e-04	k: 307	n:890000
TMEM184A   890000 perm   462 sec   (1926 perm/sec)   p_kst 3.449438e-04   p_cons 8.901169e-01   p_joint 1.293258e-03

Joint ci ratio: 1.149217e-01	ci left: 1.216899e-03	ci right 1.366341e-03	k: 1161	n:900000
Cons ci ratio: 1.451806e-03	ci left: 8.894687e-01	ci right 8.907621e-01	k: 801105	n:900000
KS ci ratio: 2.233244e-01	ci left: 3.040226e-04	ci right 3.814749e-04	k: 307	n:900000
TMEM184A   900000 perm   471 sec   (1913 perm/sec)   p_kst 3.411111e-04   p_cons 8.901167e-01   p_joint 1.290000e-03

Joint ci ratio: 1.144795e-01	ci left: 1.213132e-03	ci right 1.361500e-03	k: 1170	n:910000
Cons ci ratio: 1.443775e-03	ci left: 8.894765e-01	ci right 8.907627e-01	k: 810010	n:910000
KS ci ratio: 2.222447e-01	ci left: 3.037944e-04	ci right 3.807633e-04	k: 310	n:910000
TMEM184A   910000 perm   479 sec   (1900 perm/sec)   p_kst 3.406593e-04   p_cons 8.901209e-01   p_joint 1.285714e-03

Joint ci ratio: 1.139940e-01	ci left: 1.210505e-03	ci right 1.357881e-03	k: 1180	n:920000
Cons ci ratio: 1.435957e-03	ci left: 8.894733e-01	ci right 8.907525e-01	k: 818905	n:920000
KS ci ratio: 2.215337e-01	ci left: 3.025454e-04	ci right 3.789191e-04	k: 312	n:920000
TMEM184A   920000 perm   488 sec   (1886 perm/sec)   p_kst 3.391304e-04   p_cons 8.901141e-01   p_joint 1.282609e-03

Joint ci ratio: 1.130876e-01	ci left: 1.217339e-03	ci right 1.364290e-03	k: 1199	n:930000
Cons ci ratio: 1.428311e-03	ci left: 8.894637e-01	ci right 8.907361e-01	k: 827794	n:930000
KS ci ratio: 2.197850e-01	ci left: 3.043714e-04	ci right 3.805177e-04	k: 317	n:930000
TMEM184A   930000 perm   496 sec   (1874 perm/sec)   p_kst 3.408602e-04   p_cons 8.901011e-01   p_joint 1.289247e-03

Joint ci ratio: 1.145799e-01	ci left: 1.172347e-03	ci right 1.315861e-03	k: 1168	n:940000
Cons ci ratio: 1.420655e-03	ci left: 8.894724e-01	ci right 8.907380e-01	k: 836700	n:940000
KS ci ratio: 2.190972e-01	ci left: 3.031441e-04	ci right 3.787141e-04	k: 319	n:940000
TMEM184A   940000 perm   505 sec   (1861 perm/sec)   p_kst 3.393617e-04   p_cons 8.901064e-01   p_joint 1.242553e-03

Joint ci ratio: 1.139963e-01	ci left: 1.172277e-03	ci right 1.315002e-03	k: 1180	n:950000
Cons ci ratio: 1.412999e-03	ci left: 8.894978e-01	ci right 8.907566e-01	k: 845622	n:950000
KS ci ratio: 2.170714e-01	ci left: 3.059240e-04	ci right 3.813878e-04	k: 325	n:950000
TMEM184A   950000 perm   514 sec   (1849 perm/sec)   p_kst 3.421053e-04   p_cons 8.901284e-01   p_joint 1.242105e-03

Joint ci ratio: 1.140938e-01	ci left: 1.158042e-03	ci right 1.299162e-03	k: 1178	n:960000
Cons ci ratio: 1.405203e-03	ci left: 8.895593e-01	ci right 8.908112e-01	k: 854579	n:960000
KS ci ratio: 2.154254e-01	ci left: 3.076636e-04	ci right 3.829049e-04	k: 330	n:960000
TMEM184A   960000 perm   523 sec   (1837 perm/sec)   p_kst 3.437500e-04   p_cons 8.901865e-01   p_joint 1.227083e-03

Joint ci ratio: 1.169602e-01	ci left: 1.089036e-03	ci right 1.225311e-03	k: 1121	n:970000
Cons ci ratio: 1.397962e-03	ci left: 8.895596e-01	ci right 8.908051e-01	k: 863478	n:970000
KS ci ratio: 2.138164e-01	ci left: 3.093694e-04	ci right 3.843887e-04	k: 335	n:970000
TMEM184A   970000 perm   532 sec   (1825 perm/sec)   p_kst 3.453608e-04   p_cons 8.901835e-01   p_joint 1.155670e-03

Joint ci ratio: 1.191608e-01	ci left: 1.037320e-03	ci right 1.169739e-03	k: 1080	n:980000
Cons ci ratio: 1.390672e-03	ci left: 8.895824e-01	ci right 8.908214e-01	k: 872399	n:980000
KS ci ratio: 2.131830e-01	ci left: 3.081443e-04	ci right 3.826162e-04	k: 337	n:980000
TMEM184A   980000 perm   541 sec   (1813 perm/sec)   p_kst 3.438776e-04   p_cons 8.902031e-01   p_joint 1.102041e-03

Joint ci ratio: 1.181805e-01	ci left: 1.044485e-03	ci right 1.176644e-03	k: 1098	n:990000
Cons ci ratio: 1.383781e-03	ci left: 8.895643e-01	ci right 8.907971e-01	k: 881280	n:990000
KS ci ratio: 2.119326e-01	ci left: 3.088571e-04	ci right 3.830065e-04	k: 341	n:990000
TMEM184A   990000 perm   550 sec   (1800 perm/sec)   p_kst 3.444444e-04   p_cons 8.901818e-01   p_joint 1.109091e-03

Joint ci ratio: 1.213157e-01	ci left: 9.797148e-04	ci right 1.107204e-03	k: 1042	n:1000000
Cons ci ratio: 1.376836e-03	ci left: 8.895686e-01	ci right 8.907952e-01	k: 890183	n:1000000
KS ci ratio: 2.116237e-01	ci left: 3.067154e-04	ci right 3.802294e-04	k: 342	n:1000000
TMEM184A   1000000 perm   559 sec   (1789 perm/sec)   p_kst 3.420000e-04   p_cons 8.901830e-01   p_joint 1.042000e-03

Joint ci ratio: 1.205094e-01	ci left: 9.834569e-04	ci right 1.110522e-03	k: 1056	n:1010000
Cons ci ratio: 1.369745e-03	ci left: 8.896085e-01	ci right 8.908289e-01	k: 899122	n:1010000
KS ci ratio: 2.094964e-01	ci left: 3.102439e-04	ci right 3.837603e-04	k: 349	n:1010000
TMEM184A   1010000 perm   568 sec   (1777 perm/sec)   p_kst 3.455446e-04   p_cons 8.902198e-01   p_joint 1.045545e-03

Joint ci ratio: 1.201126e-01	ci left: 9.804713e-04	ci right 1.106703e-03	k: 1063	n:1020000
Cons ci ratio: 1.363152e-03	ci left: 8.895917e-01	ci right 8.908061e-01	k: 908004	n:1020000
KS ci ratio: 2.091980e-01	ci left: 3.081313e-04	ci right 3.810297e-04	k: 350	n:1020000
TMEM184A   1020000 perm   578 sec   (1765 perm/sec)   p_kst 3.431373e-04   p_cons 8.902000e-01   p_joint 1.042157e-03

Joint ci ratio: 1.202830e-01	ci left: 9.681267e-04	ci right 1.092959e-03	k: 1060	n:1030000
Cons ci ratio: 1.356310e-03	ci left: 8.896248e-01	ci right 8.908332e-01	k: 916937	n:1030000
KS ci ratio: 2.083097e-01	ci left: 3.079001e-04	ci right 3.803951e-04	k: 353	n:1030000
TMEM184A   1030000 perm   587 sec   (1754 perm/sec)   p_kst 3.427184e-04   p_cons 8.902301e-01   p_joint 1.029126e-03

Joint ci ratio: 1.196643e-01	ci left: 9.690773e-04	ci right 1.093344e-03	k: 1071	n:1040000
Cons ci ratio: 1.349563e-03	ci left: 8.896583e-01	ci right 8.908607e-01	k: 925871	n:1040000
KS ci ratio: 2.074327e-01	ci left: 3.076740e-04	ci right 3.797720e-04	k: 356	n:1040000
TMEM184A   1040000 perm   597 sec   (1743 perm/sec)   p_kst 3.423077e-04   p_cons 8.902606e-01   p_joint 1.029808e-03

Joint ci ratio: 1.190000e-01	ci left: 9.709355e-04	ci right 1.094701e-03	k: 1083	n:1050000
Cons ci ratio: 1.342916e-03	ci left: 8.896911e-01	ci right 8.908877e-01	k: 934805	n:1050000
KS ci ratio: 2.059950e-01	ci left: 3.092592e-04	ci right 3.811632e-04	k: 361	n:1050000
TMEM184A   1050000 perm   606 sec   (1732 perm/sec)   p_kst 3.438095e-04   p_cons 8.902905e-01   p_joint 1.031429e-03

Joint ci ratio: 1.180237e-01	ci left: 9.782537e-04	ci right 1.101857e-03	k: 1101	n:1060000
Cons ci ratio: 1.336449e-03	ci left: 8.897111e-01	ci right 8.909019e-01	k: 943726	n:1060000
KS ci ratio: 2.037554e-01	ci left: 3.135017e-04	ci right 3.855010e-04	k: 369	n:1060000
TMEM184A   1060000 perm   616 sec   (1722 perm/sec)   p_kst 3.481132e-04   p_cons 8.903075e-01   p_joint 1.038679e-03

Joint ci ratio: 1.173862e-01	ci left: 9.799960e-04	ci right 1.103104e-03	k: 1113	n:1070000
Cons ci ratio: 1.330184e-03	ci left: 8.897148e-01	ci right 8.908999e-01	k: 952630	n:1070000
KS ci ratio: 2.026629e-01	ci left: 3.141199e-04	ci right 3.858264e-04	k: 373	n:1070000
TMEM184A   1070000 perm   625 sec   (1711 perm/sec)   p_kst 3.485981e-04   p_cons 8.903084e-01   p_joint 1.040187e-03

Joint ci ratio: 1.168109e-01	ci left: 9.808088e-04	ci right 1.103374e-03	k: 1124	n:1080000
Cons ci ratio: 1.323911e-03	ci left: 8.897323e-01	ci right 8.909119e-01	k: 961549	n:1080000
KS ci ratio: 2.023927e-01	ci left: 3.120903e-04	ci right 3.832268e-04	k: 374	n:1080000
TMEM184A   1080000 perm   635 sec   (1700 perm/sec)   p_kst 3.462963e-04   p_cons 8.903231e-01   p_joint 1.040741e-03

Joint ci ratio: 1.105014e-01	ci left: 1.089475e-03	ci right 1.217787e-03	k: 1256	n:1090000
Cons ci ratio: 1.317621e-03	ci left: 8.897652e-01	ci right 8.909392e-01	k: 970485	n:1090000
KS ci ratio: 2.018553e-01	ci left: 3.109691e-04	ci right 3.816386e-04	k: 376	n:1090000
TMEM184A   1090000 perm   645 sec   (1689 perm/sec)   p_kst 3.449541e-04   p_cons 8.903532e-01   p_joint 1.152294e-03

Joint ci ratio: 1.072616e-01	ci left: 1.147666e-03	ci right 1.278619e-03	k: 1333	n:1100000
Cons ci ratio: 1.311463e-03	ci left: 8.897910e-01	ci right 8.909596e-01	k: 979414	n:1100000
KS ci ratio: 2.007928e-01	ci left: 3.115952e-04	ci right 3.819886e-04	k: 380	n:1100000
TMEM184A   1100000 perm   656 sec   (1677 perm/sec)   p_kst 3.454545e-04   p_cons 8.903764e-01   p_joint 1.211818e-03

Joint ci ratio: 1.076263e-01	ci left: 1.129436e-03	ci right 1.258775e-03	k: 1324	n:1110000
Cons ci ratio: 1.305492e-03	ci left: 8.898011e-01	ci right 8.909644e-01	k: 988326	n:1110000
KS ci ratio: 1.997470e-01	ci left: 3.122109e-04	ci right 3.823313e-04	k: 384	n:1110000
TMEM184A   1110000 perm   666 sec   (1667 perm/sec)   p_kst 3.459459e-04   p_cons 8.903838e-01   p_joint 1.192793e-03

Joint ci ratio: 1.069822e-01	ci left: 1.133254e-03	ci right 1.262205e-03	k: 1340	n:1120000
Cons ci ratio: 1.299585e-03	ci left: 8.898137e-01	ci right 8.909717e-01	k: 997241	n:1120000
KS ci ratio: 1.977031e-01	ci left: 3.162109e-04	ci right 3.864154e-04	k: 392	n:1120000
TMEM184A   1120000 perm   677 sec   (1654 perm/sec)   p_kst 3.500000e-04   p_cons 8.903937e-01   p_joint 1.196429e-03

Joint ci ratio: 1.073036e-01	ci left: 1.116335e-03	ci right 1.243766e-03	k: 1332	n:1130000
Cons ci ratio: 1.293815e-03	ci left: 8.898173e-01	ci right 8.909701e-01	k: 1006146	n:1130000
KS ci ratio: 1.964572e-01	ci left: 3.176190e-04	ci right 3.876386e-04	k: 397	n:1130000
TMEM184A   1130000 perm   687 sec   (1644 perm/sec)   p_kst 3.513274e-04   p_cons 8.903947e-01   p_joint 1.178761e-03

Joint ci ratio: 1.069833e-01	ci left: 1.113372e-03	ci right 1.240061e-03	k: 1340	n:1140000
Cons ci ratio: 1.288255e-03	ci left: 8.898005e-01	ci right 8.909484e-01	k: 1015028	n:1140000
KS ci ratio: 1.959655e-01	ci left: 3.165011e-04	ci right 3.860787e-04	k: 399	n:1140000
TMEM184A   1140000 perm   698 sec   (1634 perm/sec)   p_kst 3.500000e-04   p_cons 8.903754e-01   p_joint 1.175439e-03

Joint ci ratio: 1.098073e-01	ci left: 1.046161e-03	ci right 1.168548e-03	k: 1272	n:1150000
Cons ci ratio: 1.282932e-03	ci left: 8.897588e-01	ci right 8.909019e-01	k: 1023881	n:1150000
KS ci ratio: 1.954776e-01	ci left: 3.154028e-04	ci right 3.845458e-04	k: 401	n:1150000
TMEM184A   1150000 perm   708 sec   (1624 perm/sec)   p_kst 3.486957e-04   p_cons 8.903313e-01   p_joint 1.106087e-03

Joint ci ratio: 1.094640e-01	ci left: 1.043850e-03	ci right 1.165560e-03	k: 1280	n:1160000
Cons ci ratio: 1.277572e-03	ci left: 8.897333e-01	ci right 8.908716e-01	k: 1032752	n:1160000
KS ci ratio: 1.952351e-01	ci left: 3.135037e-04	ci right 3.821349e-04	k: 402	n:1160000
TMEM184A   1160000 perm   719 sec   (1614 perm/sec)   p_kst 3.465517e-04   p_cons 8.903034e-01   p_joint 1.103448e-03

Joint ci ratio: 1.101554e-01	ci left: 1.021628e-03	ci right 1.141548e-03	k: 1264	n:1170000
Cons ci ratio: 1.272146e-03	ci left: 8.897289e-01	ci right 8.908623e-01	k: 1041647	n:1170000
KS ci ratio: 1.942733e-01	ci left: 3.140763e-04	ci right 3.824541e-04	k: 406	n:1170000
TMEM184A   1170000 perm   729 sec   (1604 perm/sec)   p_kst 3.470085e-04   p_cons 8.902966e-01   p_joint 1.080342e-03

Joint ci ratio: 1.098088e-01	ci left: 1.019563e-03	ci right 1.138840e-03	k: 1272	n:1180000
Cons ci ratio: 1.267035e-03	ci left: 8.896863e-01	ci right 8.908151e-01	k: 1050497	n:1180000
KS ci ratio: 1.933256e-01	ci left: 3.146400e-04	ci right 3.827671e-04	k: 410	n:1180000
TMEM184A   1180000 perm   740 sec   (1595 perm/sec)   p_kst 3.474576e-04   p_cons 8.902517e-01   p_joint 1.077966e-03

Joint ci ratio: 1.092098e-01	ci left: 1.022438e-03	ci right 1.141357e-03	k: 1286	n:1190000
Cons ci ratio: 1.261692e-03	ci left: 8.896900e-01	ci right 8.908140e-01	k: 1059401	n:1190000
KS ci ratio: 1.919295e-01	ci left: 3.167948e-04	ci right 3.848354e-04	k: 416	n:1190000
TMEM184A   1190000 perm   751 sec   (1585 perm/sec)   p_kst 3.495798e-04   p_cons 8.902529e-01   p_joint 1.080672e-03

Joint ci ratio: 1.095946e-01	ci left: 1.006622e-03	ci right 1.124141e-03	k: 1277	n:1200000
Cons ci ratio: 1.256448e-03	ci left: 8.896885e-01	ci right 8.908079e-01	k: 1068299	n:1200000
KS ci ratio: 1.914710e-01	ci left: 3.157415e-04	ci right 3.833750e-04	k: 418	n:1200000
TMEM184A   1200000 perm   761 sec   (1576 perm/sec)   p_kst 3.483333e-04   p_cons 8.902492e-01   p_joint 1.064167e-03

Joint ci ratio: 1.092958e-01	ci left: 1.003930e-03	ci right 1.120794e-03	k: 1284	n:1210000
Cons ci ratio: 1.251237e-03	ci left: 8.896921e-01	ci right 8.908068e-01	k: 1077203	n:1210000
KS ci ratio: 1.910158e-01	ci left: 3.147059e-04	ci right 3.819386e-04	k: 420	n:1210000
TMEM184A   1210000 perm   772 sec   (1567 perm/sec)   p_kst 3.471074e-04   p_cons 8.902504e-01   p_joint 1.061157e-03

Joint ci ratio: 1.090418e-01	ci left: 1.000484e-03	ci right 1.116659e-03	k: 1290	n:1220000
Cons ci ratio: 1.246091e-03	ci left: 8.896956e-01	ci right 8.908058e-01	k: 1086107	n:1220000
KS ci ratio: 1.910161e-01	ci left: 3.121263e-04	ci right 3.788080e-04	k: 420	n:1220000
TMEM184A   1220000 perm   783 sec   (1557 perm/sec)   p_kst 3.442623e-04   p_cons 8.902516e-01   p_joint 1.057377e-03

Joint ci ratio: 1.087895e-01	ci left: 9.970954e-04	ci right 1.112592e-03	k: 1296	n:1230000
Cons ci ratio: 1.240899e-03	ci left: 8.897162e-01	ci right 8.908218e-01	k: 1095032	n:1230000
KS ci ratio: 1.903391e-01	ci left: 3.119112e-04	ci right 3.782836e-04	k: 423	n:1230000
TMEM184A   1230000 perm   794 sec   (1548 perm/sec)   p_kst 3.439024e-04   p_cons 8.902699e-01   p_joint 1.053659e-03

Joint ci ratio: 1.084972e-01	ci left: 9.945460e-04	ci right 1.109418e-03	k: 1303	n:1240000
Cons ci ratio: 1.236230e-03	ci left: 8.896638e-01	ci right 8.907651e-01	k: 1103867	n:1240000
KS ci ratio: 1.896694e-01	ci left: 3.117001e-04	ci right 3.777672e-04	k: 426	n:1240000
TMEM184A   1240000 perm   805 sec   (1539 perm/sec)   p_kst 3.435484e-04   p_cons 8.902153e-01   p_joint 1.050806e-03

Joint ci ratio: 1.082901e-01	ci left: 9.904811e-04	ci right 1.104651e-03	k: 1308	n:1250000
Cons ci ratio: 1.230767e-03	ci left: 8.897468e-01	ci right 8.908434e-01	k: 1112870	n:1250000
KS ci ratio: 1.887871e-01	ci left: 3.122549e-04	ci right 3.780965e-04	k: 430	n:1250000
TMEM184A   1250000 perm   817 sec   (1531 perm/sec)   p_kst 3.440000e-04   p_cons 8.902960e-01   p_joint 1.046400e-03

Joint ci ratio: 1.078788e-01	ci left: 9.903421e-04	ci right 1.104035e-03	k: 1318	n:1260000
Cons ci ratio: 1.225948e-03	ci left: 8.897371e-01	ci right 8.908293e-01	k: 1121758	n:1260000
KS ci ratio: 1.877014e-01	ci left: 3.135580e-04	ci right 3.792507e-04	k: 435	n:1260000
TMEM184A   1260000 perm   828 sec   (1522 perm/sec)   p_kst 3.452381e-04   p_cons 8.902841e-01   p_joint 1.046032e-03

Joint ci ratio: 1.084154e-01	ci left: 9.725843e-04	ci right 1.084829e-03	k: 1305	n:1270000
Cons ci ratio: 1.221372e-03	ci left: 8.896976e-01	ci right 8.907857e-01	k: 1130608	n:1270000
KS ci ratio: 1.870590e-01	ci left: 3.133404e-04	ci right 3.787374e-04	k: 438	n:1270000
TMEM184A   1270000 perm   839 sec   (1514 perm/sec)   p_kst 3.448819e-04   p_cons 8.902425e-01   p_joint 1.027559e-03

Joint ci ratio: 1.081261e-01	ci left: 9.703066e-04	ci right 1.081971e-03	k: 1312	n:1280000
Cons ci ratio: 1.216565e-03	ci left: 8.897041e-01	ci right 8.907879e-01	k: 1139516	n:1280000
KS ci ratio: 1.868465e-01	ci left: 3.116371e-04	ci right 3.765963e-04	k: 439	n:1280000
TMEM184A   1280000 perm   850 sec   (1505 perm/sec)   p_kst 3.429688e-04   p_cons 8.902469e-01   p_joint 1.025000e-03

Joint ci ratio: 1.075541e-01	ci left: 9.733449e-04	ci right 1.084729e-03	k: 1326	n:1290000
Cons ci ratio: 1.211703e-03	ci left: 8.897284e-01	ci right 8.908079e-01	k: 1148447	n:1290000
KS ci ratio: 1.864234e-01	ci left: 3.106992e-04	ci right 3.752997e-04	k: 441	n:1290000
TMEM184A   1290000 perm   862 sec   (1497 perm/sec)   p_kst 3.418605e-04   p_cons 8.902690e-01   p_joint 1.027907e-03

Joint ci ratio: 1.073523e-01	ci left: 9.696003e-04	ci right 1.080334e-03	k: 1331	n:1300000
Cons ci ratio: 1.207132e-03	ci left: 8.897145e-01	ci right 8.907899e-01	k: 1157329	n:1300000
KS ci ratio: 1.860031e-01	ci left: 3.097760e-04	ci right 3.740229e-04	k: 443	n:1300000
TMEM184A   1300000 perm   873 sec   (1489 perm/sec)   p_kst 3.407692e-04   p_cons 8.902531e-01   p_joint 1.023846e-03

Joint ci ratio: 1.069515e-01	ci left: 9.696278e-04	ci right 1.079926e-03	k: 1341	n:1310000
Cons ci ratio: 1.202457e-03	ci left: 8.897261e-01	ci right 8.907974e-01	k: 1166244	n:1310000
KS ci ratio: 1.857942e-01	ci left: 3.081391e-04	ci right 3.719666e-04	k: 444	n:1310000
TMEM184A   1310000 perm   886 sec   (1479 perm/sec)   p_kst 3.389313e-04   p_cons 8.902626e-01   p_joint 1.023664e-03

Joint ci ratio: 1.066343e-01	ci left: 9.681808e-04	ci right 1.077967e-03	k: 1349	n:1320000
Cons ci ratio: 1.197766e-03	ci left: 8.897489e-01	ci right 8.908160e-01	k: 1175174	n:1320000
KS ci ratio: 1.849647e-01	ci left: 3.086944e-04	ci right 3.723195e-04	k: 448	n:1320000
TMEM184A   1320000 perm   898 sec   (1471 perm/sec)   p_kst 3.393939e-04   p_cons 8.902833e-01   p_joint 1.021970e-03

Joint ci ratio: 1.062415e-01	ci left: 9.682199e-04	ci right 1.077581e-03	k: 1359	n:1330000
Cons ci ratio: 1.193378e-03	ci left: 8.897307e-01	ci right 8.907939e-01	k: 1184050	n:1330000
KS ci ratio: 1.841462e-01	ci left: 3.092420e-04	ci right 3.726664e-04	k: 452	n:1330000
TMEM184A   1330000 perm   909 sec   (1463 perm/sec)   p_kst 3.398496e-04   p_cons 8.902632e-01   p_joint 1.021805e-03

Joint ci ratio: 1.056602e-01	ci left: 9.718919e-04	ci right 1.081030e-03	k: 1374	n:1340000
Cons ci ratio: 1.188852e-03	ci left: 8.897435e-01	ci right 8.908026e-01	k: 1192967	n:1340000
KS ci ratio: 1.829385e-01	ci left: 3.112061e-04	ci right 3.745683e-04	k: 458	n:1340000
TMEM184A   1340000 perm   921 sec   (1455 perm/sec)   p_kst 3.417910e-04   p_cons 8.902739e-01   p_joint 1.025373e-03

Joint ci ratio: 1.052021e-01	ci left: 9.733472e-04	ci right 1.082145e-03	k: 1386	n:1350000
Cons ci ratio: 1.184484e-03	ci left: 8.897382e-01	ci right 8.907934e-01	k: 1201860	n:1350000
KS ci ratio: 1.821465e-01	ci left: 3.117285e-04	ci right 3.748920e-04	k: 462	n:1350000
TMEM184A   1350000 perm   933 sec   (1447 perm/sec)   p_kst 3.422222e-04   p_cons 8.902667e-01   p_joint 1.026667e-03

Joint ci ratio: 1.050888e-01	ci left: 9.683380e-04	ci right 1.076452e-03	k: 1389	n:1360000
Cons ci ratio: 1.180209e-03	ci left: 8.897257e-01	ci right 8.907771e-01	k: 1210743	n:1360000
KS ci ratio: 1.817545e-01	ci left: 3.108399e-04	ci right 3.736729e-04	k: 464	n:1360000
TMEM184A   1360000 perm   945 sec   (1439 perm/sec)   p_kst 3.411765e-04   p_cons 8.902522e-01   p_joint 1.021324e-03

Joint ci ratio: 1.047503e-01	ci left: 9.676668e-04	ci right 1.075336e-03	k: 1398	n:1370000
Cons ci ratio: 1.175940e-03	ci left: 8.897199e-01	ci right 8.907675e-01	k: 1219635	n:1370000
KS ci ratio: 1.813650e-01	ci left: 3.099645e-04	ci right 3.724715e-04	k: 466	n:1370000
TMEM184A   1370000 perm   957 sec   (1431 perm/sec)   p_kst 3.401460e-04   p_cons 8.902445e-01   p_joint 1.020438e-03

Joint ci ratio: 1.046011e-01	ci left: 9.634773e-04	ci right 1.070519e-03	k: 1402	n:1380000
Cons ci ratio: 1.171873e-03	ci left: 8.896881e-01	ci right 8.907320e-01	k: 1228491	n:1380000
KS ci ratio: 1.811713e-01	ci left: 3.084102e-04	ci right 3.705300e-04	k: 467	n:1380000
TMEM184A   1380000 perm   970 sec   (1423 perm/sec)   p_kst 3.384058e-04   p_cons 8.902109e-01   p_joint 1.015942e-03

Joint ci ratio: 1.043042e-01	ci left: 9.621508e-04	ci right 1.068723e-03	k: 1410	n:1390000
Cons ci ratio: 1.167530e-03	ci left: 8.897101e-01	ci right 8.907502e-01	k: 1237421	n:1390000
KS ci ratio: 1.807855e-01	ci left: 3.075650e-04	ci right 3.693683e-04	k: 469	n:1390000
TMEM184A   1390000 perm   982 sec   (1416 perm/sec)   p_kst 3.374101e-04   p_cons 8.902309e-01   p_joint 1.014388e-03

Joint ci ratio: 1.040466e-01	ci left: 9.601479e-04	ci right 1.066219e-03	k: 1417	n:1400000
Cons ci ratio: 1.163086e-03	ci left: 8.897568e-01	ci right 8.907930e-01	k: 1246386	n:1400000
KS ci ratio: 1.805936e-01	ci left: 3.060501e-04	ci right 3.674765e-04	k: 470	n:1400000
TMEM184A   1400000 perm   994 sec   (1408 perm/sec)   p_kst 3.357143e-04   p_cons 8.902757e-01   p_joint 1.012143e-03

Joint ci ratio: 1.037180e-01	ci left: 9.595555e-04	ci right 1.065206e-03	k: 1426	n:1410000
Cons ci ratio: 1.158886e-03	ci left: 8.897702e-01	ci right 8.908026e-01	k: 1255305	n:1410000
KS ci ratio: 1.800212e-01	ci left: 3.059112e-04	ci right 3.670939e-04	k: 473	n:1410000
TMEM184A   1410000 perm   1007 sec   (1400 perm/sec)   p_kst 3.354610e-04   p_cons 8.902872e-01   p_joint 1.011348e-03

Joint ci ratio: 1.034646e-01	ci left: 9.575999e-04	ci right 1.062762e-03	k: 1433	n:1420000
Cons ci ratio: 1.154765e-03	ci left: 8.897778e-01	ci right 8.908065e-01	k: 1264216	n:1420000
KS ci ratio: 1.798318e-01	ci left: 3.044293e-04	ci right 3.652446e-04	k: 474	n:1420000
TMEM184A   1420000 perm   1019 sec   (1393 perm/sec)   p_kst 3.338028e-04   p_cons 8.902930e-01   p_joint 1.009155e-03

Joint ci ratio: 1.031058e-01	ci left: 9.577157e-04	ci right 1.062504e-03	k: 1443	n:1430000
Cons ci ratio: 1.150711e-03	ci left: 8.897810e-01	ci right 8.908062e-01	k: 1273121	n:1430000
KS ci ratio: 1.792666e-01	ci left: 3.043041e-04	ci right 3.648826e-04	k: 477	n:1430000
TMEM184A   1430000 perm   1032 sec   (1385 perm/sec)   p_kst 3.335664e-04   p_cons 8.902944e-01   p_joint 1.009091e-03

Joint ci ratio: 1.027152e-01	ci left: 9.585072e-04	ci right 1.062961e-03	k: 1454	n:1440000
Cons ci ratio: 1.146892e-03	ci left: 8.897516e-01	ci right 8.907733e-01	k: 1281979	n:1440000
KS ci ratio: 1.788928e-01	ci left: 3.035175e-04	ci right 3.637998e-04	k: 479	n:1440000
TMEM184A   1440000 perm   1045 sec   (1378 perm/sec)   p_kst 3.326389e-04   p_cons 8.902632e-01   p_joint 1.009722e-03

Joint ci ratio: 1.023991e-01	ci left: 9.579445e-04	ci right 1.061996e-03	k: 1463	n:1450000
Cons ci ratio: 1.142872e-03	ci left: 8.897633e-01	ci right 8.907814e-01	k: 1290896	n:1450000
KS ci ratio: 1.781520e-01	ci left: 3.040596e-04	ci right 3.641726e-04	k: 483	n:1450000
TMEM184A   1450000 perm   1058 sec   (1371 perm/sec)   p_kst 3.331034e-04   p_cons 8.902731e-01   p_joint 1.008966e-03

Joint ci ratio: 1.021205e-01	ci left: 9.567225e-04	ci right 1.060342e-03	k: 1471	n:1460000
Cons ci ratio: 1.138975e-03	ci left: 8.897611e-01	ci right 8.907757e-01	k: 1299793	n:1460000
KS ci ratio: 1.777852e-01	ci left: 3.032858e-04	ci right 3.631091e-04	k: 485	n:1460000
TMEM184A   1460000 perm   1071 sec   (1363 perm/sec)   p_kst 3.321918e-04   p_cons 8.902692e-01   p_joint 1.007534e-03

Joint ci ratio: 1.017754e-01	ci left: 9.568435e-04	ci right 1.060105e-03	k: 1481	n:1470000
Cons ci ratio: 1.135136e-03	ci left: 8.897555e-01	ci right 8.907667e-01	k: 1308685	n:1470000
KS ci ratio: 1.768775e-01	ci left: 3.044731e-04	ci right 3.641911e-04	k: 490	n:1470000
TMEM184A   1470000 perm   1084 sec   (1356 perm/sec)   p_kst 3.333333e-04   p_cons 8.902619e-01   p_joint 1.007483e-03

Joint ci ratio: 9.887935e-02	ci left: 1.008347e-03	ci right 1.113891e-03	k: 1569	n:1480000
Cons ci ratio: 1.131148e-03	ci left: 8.897825e-01	ci right 8.907902e-01	k: 1317625	n:1480000
KS ci ratio: 1.765185e-01	ci left: 3.037074e-04	ci right 3.631414e-04	k: 492	n:1480000
TMEM184A   1480000 perm   1097 sec   (1349 perm/sec)   p_kst 3.324324e-04   p_cons 8.902872e-01   p_joint 1.060135e-03

Joint ci ratio: 9.894281e-02	ci left: 1.000271e-03	ci right 1.105040e-03	k: 1567	n:1490000
Cons ci ratio: 1.127419e-03	ci left: 8.897716e-01	ci right 8.907759e-01	k: 1326509	n:1490000
KS ci ratio: 1.756300e-01	ci left: 3.048769e-04	ci right 3.642076e-04	k: 497	n:1490000
TMEM184A   1490000 perm   1110 sec   (1343 perm/sec)   p_kst 3.335570e-04   p_cons 8.902745e-01   p_joint 1.051678e-03

Joint ci ratio: 9.859756e-02	ci left: 1.000754e-03	ci right 1.105187e-03	k: 1578	n:1500000
Cons ci ratio: 1.123535e-03	ci left: 8.897941e-01	ci right 8.907950e-01	k: 1335443	n:1500000
KS ci ratio: 1.747548e-01	ci left: 3.060316e-04	ci right 3.652589e-04	k: 502	n:1500000
TMEM184A   1500000 perm   1123 sec   (1336 perm/sec)   p_kst 3.346667e-04   p_cons 8.902953e-01   p_joint 1.052000e-03

Joint ci ratio: 9.825589e-02	ci left: 1.001232e-03	ci right 1.105332e-03	k: 1589	n:1510000
Cons ci ratio: 1.120074e-03	ci left: 8.897494e-01	ci right 8.907472e-01	k: 1344276	n:1510000
KS ci ratio: 1.742360e-01	ci left: 3.059049e-04	ci right 3.649134e-04	k: 505	n:1510000
TMEM184A   1510000 perm   1136 sec   (1329 perm/sec)   p_kst 3.344371e-04   p_cons 8.902490e-01   p_joint 1.052318e-03

Joint ci ratio: 9.807117e-02	ci left: 9.984958e-04	ci right 1.102105e-03	k: 1595	n:1520000
Cons ci ratio: 1.116292e-03	ci left: 8.897672e-01	ci right 8.907616e-01	k: 1353203	n:1520000
KS ci ratio: 1.738928e-01	ci left: 3.051508e-04	ci right 3.638858e-04	k: 507	n:1520000
TMEM184A   1520000 perm   1151 sec   (1321 perm/sec)   p_kst 3.335526e-04   p_cons 8.902651e-01   p_joint 1.049342e-03

Joint ci ratio: 9.782638e-02	ci left: 9.970703e-04	ci right 1.100258e-03	k: 1603	n:1530000
Cons ci ratio: 1.112614e-03	ci left: 8.897730e-01	ci right 8.907641e-01	k: 1362112	n:1530000
KS ci ratio: 1.738929e-01	ci left: 3.031563e-04	ci right 3.615075e-04	k: 507	n:1530000
TMEM184A   1530000 perm   1165 sec   (1313 perm/sec)   p_kst 3.313725e-04   p_cons 8.902693e-01   p_joint 1.047712e-03

Joint ci ratio: 9.755312e-02	ci left: 9.962972e-04	ci right 1.099101e-03	k: 1612	n:1540000
Cons ci ratio: 1.109182e-03	ci left: 8.897416e-01	ci right 8.907297e-01	k: 1370964	n:1540000
KS ci ratio: 1.735517e-01	ci left: 3.024300e-04	ci right 3.605151e-04	k: 509	n:1540000
TMEM184A   1540000 perm   1178 sec   (1307 perm/sec)   p_kst 3.305195e-04   p_cons 8.902364e-01   p_joint 1.046753e-03

Joint ci ratio: 9.716229e-02	ci left: 9.980524e-04	ci right 1.100601e-03	k: 1625	n:1550000
Cons ci ratio: 1.105808e-03	ci left: 8.897061e-01	ci right 8.906911e-01	k: 1379809	n:1550000
KS ci ratio: 1.723726e-01	ci left: 3.047995e-04	ci right 3.629006e-04	k: 516	n:1550000
TMEM184A   1550000 perm   1192 sec   (1301 perm/sec)   p_kst 3.329032e-04   p_cons 8.901994e-01   p_joint 1.048387e-03

Joint ci ratio: 9.891359e-02	ci left: 9.560109e-04	ci right 1.056113e-03	k: 1568	n:1560000
Cons ci ratio: 1.102153e-03	ci left: 8.897263e-01	ci right 8.907081e-01	k: 1388740	n:1560000
KS ci ratio: 1.717096e-01	ci left: 3.052994e-04	ci right 3.632487e-04	k: 520	n:1560000
TMEM184A   1560000 perm   1205 sec   (1294 perm/sec)   p_kst 3.333333e-04   p_cons 8.902179e-01   p_joint 1.005128e-03

Joint ci ratio: 9.872513e-02	ci left: 9.536488e-04	ci right 1.053302e-03	k: 1574	n:1570000
Cons ci ratio: 1.098559e-03	ci left: 8.897418e-01	ci right 8.907204e-01	k: 1397664	n:1570000
KS ci ratio: 1.715452e-01	ci left: 3.039644e-04	ci right 3.615993e-04	k: 521	n:1570000
TMEM184A   1570000 perm   1219 sec   (1288 perm/sec)   p_kst 3.318471e-04   p_cons 8.902318e-01   p_joint 1.002548e-03

Joint ci ratio: 9.828913e-02	ci left: 9.562556e-04	ci right 1.055715e-03	k: 1588	n:1580000
Cons ci ratio: 1.095036e-03	ci left: 8.897508e-01	ci right 8.907263e-01	k: 1406578	n:1580000
KS ci ratio: 1.710543e-01	ci left: 3.038579e-04	ci right 3.612908e-04	k: 524	n:1580000
TMEM184A   1580000 perm   1232 sec   (1282 perm/sec)   p_kst 3.316456e-04   p_cons 8.902392e-01   p_joint 1.005063e-03

Joint ci ratio: 9.810421e-02	ci left: 9.539223e-04	ci right 1.052941e-03	k: 1594	n:1590000
Cons ci ratio: 1.091504e-03	ci left: 8.897672e-01	ci right 8.907395e-01	k: 1415504	n:1590000
KS ci ratio: 1.705677e-01	ci left: 3.037529e-04	ci right 3.609859e-04	k: 527	n:1590000
TMEM184A   1590000 perm   1246 sec   (1276 perm/sec)   p_kst 3.314465e-04   p_cons 8.902541e-01   p_joint 1.002516e-03

Joint ci ratio: 9.776763e-02	ci left: 9.546669e-04	ci right 1.053404e-03	k: 1605	n:1600000
Cons ci ratio: 1.087982e-03	ci left: 8.897878e-01	ci right 8.907570e-01	k: 1424437	n:1600000
KS ci ratio: 1.697657e-01	ci left: 3.048464e-04	ci right 3.619877e-04	k: 532	n:1600000
TMEM184A   1600000 perm   1260 sec   (1270 perm/sec)   p_kst 3.325000e-04   p_cons 8.902731e-01   p_joint 1.003125e-03

Joint ci ratio: 9.819731e-02	ci left: 9.402544e-04	ci right 1.037952e-03	k: 1591	n:1610000
Cons ci ratio: 1.084576e-03	ci left: 8.897932e-01	ci right 8.907594e-01	k: 1433346	n:1610000
KS ci ratio: 1.692900e-01	ci left: 3.047372e-04	ci right 3.616817e-04	k: 535	n:1610000
TMEM184A   1610000 perm   1274 sec   (1264 perm/sec)   p_kst 3.322981e-04   p_cons 8.902770e-01   p_joint 9.881988e-04

Joint ci ratio: 9.798222e-02	ci left: 9.386653e-04	ci right 1.035972e-03	k: 1598	n:1620000
Cons ci ratio: 1.081161e-03	ci left: 8.898060e-01	ci right 8.907691e-01	k: 1442267	n:1620000
KS ci ratio: 1.686618e-01	ci left: 3.052209e-04	ci right 3.620225e-04	k: 539	n:1620000
TMEM184A   1620000 perm   1288 sec   (1258 perm/sec)   p_kst 3.327160e-04   p_cons 8.902883e-01   p_joint 9.864198e-04

Joint ci ratio: 9.773808e-02	ci left: 9.376944e-04	ci right 1.034645e-03	k: 1606	n:1630000
Cons ci ratio: 1.077924e-03	ci left: 8.897922e-01	ci right 8.907524e-01	k: 1451145	n:1630000
KS ci ratio: 1.680405e-01	ci left: 3.056990e-04	ci right 3.623588e-04	k: 543	n:1630000
TMEM184A   1630000 perm   1302 sec   (1252 perm/sec)   p_kst 3.331288e-04   p_cons 8.902730e-01   p_joint 9.852761e-04

Joint ci ratio: 1.075254e-01	ci left: 7.662078e-04	ci right 8.538631e-04	k: 1327	n:1640000
Cons ci ratio: 1.074769e-03	ci left: 8.897688e-01	ci right 8.907262e-01	k: 1460007	n:1640000
KS ci ratio: 1.677325e-01	ci left: 3.050032e-04	ci right 3.614200e-04	k: 545	n:1640000
TMEM184A   1640000 perm   1316 sec   (1246 perm/sec)   p_kst 3.323171e-04   p_cons 8.902482e-01   p_joint 8.091463e-04

Joint ci ratio: 1.071228e-01	ci left: 7.674621e-04	ci right 8.549114e-04	k: 1337	n:1650000
Cons ci ratio: 1.071479e-03	ci left: 8.897754e-01	ci right 8.907299e-01	k: 1468918	n:1650000
KS ci ratio: 1.671215e-01	ci left: 3.054774e-04	ci right 3.617553e-04	k: 549	n:1650000
TMEM184A   1650000 perm   1330 sec   (1241 perm/sec)   p_kst 3.327273e-04   p_cons 8.902533e-01   p_joint 8.103030e-04

Joint ci ratio: 1.069233e-01	ci left: 7.657702e-04	ci right 8.528540e-04	k: 1342	n:1660000
Cons ci ratio: 1.068173e-03	ci left: 8.897904e-01	ci right 8.907420e-01	k: 1477843	n:1660000
KS ci ratio: 1.669698e-01	ci left: 3.042144e-04	ci right 3.602037e-04	k: 550	n:1660000
TMEM184A   1660000 perm   1344 sec   (1235 perm/sec)   p_kst 3.313253e-04   p_cons 8.902669e-01   p_joint 8.084337e-04

Joint ci ratio: 1.066062e-01	ci left: 7.658473e-04	ci right 8.526654e-04	k: 1350	n:1670000
Cons ci ratio: 1.064972e-03	ci left: 8.897914e-01	ci right 8.907401e-01	k: 1486745	n:1670000
KS ci ratio: 1.666677e-01	ci left: 3.035403e-04	ci right 3.592943e-04	k: 552	n:1670000
TMEM184A   1670000 perm   1358 sec   (1230 perm/sec)   p_kst 3.305389e-04   p_cons 8.902665e-01   p_joint 8.083832e-04

Joint ci ratio: 1.064096e-01	ci left: 7.641855e-04	ci right 8.506455e-04	k: 1355	n:1680000
Cons ci ratio: 1.061835e-03	ci left: 8.897859e-01	ci right 8.907318e-01	k: 1495636	n:1680000
KS ci ratio: 1.662175e-01	ci left: 3.034448e-04	ci right 3.590157e-04	k: 555	n:1680000
TMEM184A   1680000 perm   1372 sec   (1224 perm/sec)   p_kst 3.303571e-04   p_cons 8.902595e-01   p_joint 8.065476e-04

Joint ci ratio: 1.143671e-01	ci left: 6.549387e-04	ci right 7.349540e-04	k: 1173	n:1690000
Cons ci ratio: 1.058813e-03	ci left: 8.897644e-01	ci right 8.907076e-01	k: 1504500	n:1690000
KS ci ratio: 1.654750e-01	ci left: 3.044851e-04	ci right 3.599726e-04	k: 560	n:1690000
TMEM184A   1690000 perm   1387 sec   (1219 perm/sec)   p_kst 3.313609e-04   p_cons 8.902367e-01   p_joint 6.940828e-04

Joint ci ratio: 1.141728e-01	ci left: 6.533718e-04	ci right 7.330509e-04	k: 1177	n:1700000
Cons ci ratio: 1.055641e-03	ci left: 8.897756e-01	ci right 8.907160e-01	k: 1513419	n:1700000
KS ci ratio: 1.653278e-01	ci left: 3.032579e-04	ci right 3.584677e-04	k: 561	n:1700000
TMEM184A   1700000 perm   1402 sec   (1213 perm/sec)   p_kst 3.300000e-04   p_cons 8.902465e-01   p_joint 6.923529e-04

Joint ci ratio: 1.137871e-01	ci left: 6.540959e-04	ci right 7.335758e-04	k: 1185	n:1710000
Cons ci ratio: 1.052548e-03	ci left: 8.897773e-01	ci right 8.907149e-01	k: 1522322	n:1710000
KS ci ratio: 1.651811e-01	ci left: 3.020451e-04	ci right 3.569804e-04	k: 562	n:1710000
TMEM184A   1710000 perm   1416 sec   (1207 perm/sec)   p_kst 3.286550e-04   p_cons 8.902468e-01   p_joint 6.929825e-04

Joint ci ratio: 1.137393e-01	ci left: 6.508578e-04	ci right 7.299088e-04	k: 1186	n:1720000
Cons ci ratio: 1.049520e-03	ci left: 8.897720e-01	ci right 8.907069e-01	k: 1531213	n:1720000
KS ci ratio: 1.651812e-01	ci left: 3.002890e-04	ci right 3.549049e-04	k: 562	n:1720000
TMEM184A   1720000 perm   1431 sec   (1202 perm/sec)   p_kst 3.267442e-04   p_cons 8.902401e-01   p_joint 6.895349e-04

Joint ci ratio: 1.136438e-01	ci left: 6.482188e-04	ci right 7.268787e-04	k: 1188	n:1730000
Cons ci ratio: 1.046381e-03	ci left: 8.897923e-01	ci right 8.907244e-01	k: 1540148	n:1730000
KS ci ratio: 1.648887e-01	ci left: 2.996615e-04	ci right 3.540572e-04	k: 564	n:1730000
TMEM184A   1730000 perm   1446 sec   (1196 perm/sec)   p_kst 3.260116e-04   p_cons 8.902590e-01   p_joint 6.867052e-04

Joint ci ratio: 1.132160e-01	ci left: 6.495191e-04	ci right 7.280203e-04	k: 1197	n:1740000
Cons ci ratio: 1.043323e-03	ci left: 8.898025e-01	ci right 8.907319e-01	k: 1549066	n:1740000
KS ci ratio: 1.641638e-01	ci left: 3.006946e-04	ci right 3.550142e-04	k: 569	n:1740000
TMEM184A   1740000 perm   1461 sec   (1191 perm/sec)   p_kst 3.270115e-04   p_cons 8.902678e-01   p_joint 6.879310e-04

Joint ci ratio: 1.129336e-01	ci left: 6.491392e-04	ci right 7.273857e-04	k: 1203	n:1750000
Cons ci ratio: 1.040471e-03	ci left: 8.897788e-01	ci right 8.907056e-01	k: 1557925	n:1750000
KS ci ratio: 1.637335e-01	ci left: 3.006203e-04	ci right 3.547701e-04	k: 572	n:1750000
TMEM184A   1750000 perm   1476 sec   (1185 perm/sec)   p_kst 3.268571e-04   p_cons 8.902429e-01   p_joint 6.874286e-04

Joint ci ratio: 1.126533e-01	ci left: 6.487638e-04	ci right 7.267580e-04	k: 1209	n:1760000
Cons ci ratio: 1.037536e-03	ci left: 8.897753e-01	ci right 8.906995e-01	k: 1566819	n:1760000
KS ci ratio: 1.631649e-01	ci left: 3.010920e-04	ci right 3.551200e-04	k: 576	n:1760000
TMEM184A   1760000 perm   1491 sec   (1180 perm/sec)   p_kst 3.272727e-04   p_cons 8.902381e-01   p_joint 6.869318e-04

Joint ci ratio: 1.083896e-01	ci left: 6.983873e-04	ci right 7.789669e-04	k: 1306	n:1770000
Cons ci ratio: 1.034707e-03	ci left: 8.897566e-01	ci right 8.906783e-01	k: 1575686	n:1770000
KS ci ratio: 1.627424e-01	ci left: 3.010167e-04	ci right 3.548776e-04	k: 579	n:1770000
TMEM184A   1770000 perm   1507 sec   (1175 perm/sec)   p_kst 3.271186e-04   p_cons 8.902181e-01   p_joint 7.378531e-04

Joint ci ratio: 1.080183e-01	ci left: 6.993831e-04	ci right 7.797837e-04	k: 1315	n:1780000
Cons ci ratio: 1.031699e-03	ci left: 8.897764e-01	ci right 8.906954e-01	k: 1584621	n:1780000
KS ci ratio: 1.621841e-01	ci left: 3.014814e-04	ci right 3.552224e-04	k: 583	n:1780000
TMEM184A   1780000 perm   1522 sec   (1170 perm/sec)   p_kst 3.275281e-04   p_cons 8.902365e-01   p_joint 7.387640e-04

Joint ci ratio: 1.078546e-01	ci left: 6.976502e-04	ci right 7.777223e-04	k: 1319	n:1790000
Cons ci ratio: 1.028773e-03	ci left: 8.897853e-01	ci right 8.907017e-01	k: 1593537	n:1790000
KS ci ratio: 1.620455e-01	ci left: 3.003331e-04	ci right 3.538192e-04	k: 584	n:1790000
TMEM184A   1790000 perm   1537 sec   (1164 perm/sec)   p_kst 3.262570e-04   p_cons 8.902441e-01   p_joint 7.368715e-04

Joint ci ratio: 1.075293e-01	ci left: 6.980992e-04	ci right 7.779657e-04	k: 1327	n:1800000
Cons ci ratio: 1.025889e-03	ci left: 8.897908e-01	ci right 8.907046e-01	k: 1602447	n:1800000
KS ci ratio: 1.613574e-01	ci left: 3.013300e-04	ci right 3.547436e-04	k: 589	n:1800000
TMEM184A   1800000 perm   1552 sec   (1159 perm/sec)   p_kst 3.272222e-04   p_cons 8.902483e-01   p_joint 7.372222e-04

Joint ci ratio: 1.073275e-01	ci left: 6.969304e-04	ci right 7.765042e-04	k: 1332	n:1810000
Cons ci ratio: 1.023136e-03	ci left: 8.897757e-01	ci right 8.906871e-01	k: 1611320	n:1810000
KS ci ratio: 1.610846e-01	ci left: 3.007256e-04	ci right 3.539332e-04	k: 591	n:1810000
TMEM184A   1810000 perm   1568 sec   (1154 perm/sec)   p_kst 3.265193e-04   p_cons 8.902320e-01   p_joint 7.359116e-04

Joint ci ratio: 6.414475e-02	ci left: 1.982104e-03	ci right 2.113994e-03	k: 3726	n:1820000
Cons ci ratio: 1.020294e-03	ci left: 8.897823e-01	ci right 8.906912e-01	k: 1620232	n:1820000
KS ci ratio: 1.128414e-01	ci left: 6.252397e-04	ci right 7.005397e-04	k: 1205	n:1820000
TMEM184A   1820000 perm   1584 sec   (1149 perm/sec)   p_kst 6.620879e-04   p_cons 8.902374e-01   p_joint 2.047253e-03

Joint ci ratio: 6.169681e-02	ci left: 2.133171e-03	ci right 2.269504e-03	k: 4027	n:1830000
Cons ci ratio: 1.017393e-03	ci left: 8.898047e-01	ci right 8.907110e-01	k: 1629173	n:1830000
KS ci ratio: 1.122840e-01	ci left: 6.281959e-04	ci right 7.034535e-04	k: 1217	n:1830000
TMEM184A   1830000 perm   1599 sec   (1144 perm/sec)   p_kst 6.650273e-04   p_cons 8.902585e-01   p_joint 2.200546e-03

Joint ci ratio: 6.155186e-02	ci left: 2.131745e-03	ci right 2.267655e-03	k: 4046	n:1840000
Cons ci ratio: 1.014674e-03	ci left: 8.897964e-01	ci right 8.907002e-01	k: 1638058	n:1840000
KS ci ratio: 1.120084e-01	ci left: 6.279512e-04	ci right 7.029827e-04	k: 1223	n:1840000
TMEM184A   1840000 perm   1615 sec   (1139 perm/sec)   p_kst 6.646739e-04   p_cons 8.902489e-01   p_joint 2.198913e-03

Joint ci ratio: 6.228136e-02	ci left: 2.070196e-03	ci right 2.203803e-03	k: 3952	n:1850000
Cons ci ratio: 1.012027e-03	ci left: 8.897784e-01	ci right 8.906798e-01	k: 1646925	n:1850000
KS ci ratio: 1.119172e-01	ci left: 6.256076e-04	ci right 7.002942e-04	k: 1225	n:1850000
TMEM184A   1850000 perm   1631 sec   (1134 perm/sec)   p_kst 6.621622e-04   p_cons 8.902297e-01   p_joint 2.136216e-03

Joint ci ratio: 6.212442e-02	ci left: 2.069651e-03	ci right 2.202874e-03	k: 3972	n:1860000
Cons ci ratio: 1.009243e-03	ci left: 8.897913e-01	ci right 8.906903e-01	k: 1655849	n:1860000
KS ci ratio: 1.116897e-01	ci left: 6.248571e-04	ci right 6.992925e-04	k: 1230	n:1860000
TMEM184A   1860000 perm   1647 sec   (1130 perm/sec)   p_kst 6.612903e-04   p_cons 8.902414e-01   p_joint 2.135484e-03

Joint ci ratio: 6.021809e-02	ci left: 2.192866e-03	ci right 2.329538e-03	k: 4227	n:1870000
Cons ci ratio: 1.006624e-03	ci left: 8.897762e-01	ci right 8.906728e-01	k: 1664721	n:1870000
KS ci ratio: 1.114185e-01	ci left: 6.246347e-04	ci right 6.988510e-04	k: 1236	n:1870000
TMEM184A   1870000 perm   1663 sec   (1125 perm/sec)   p_kst 6.609626e-04   p_cons 8.902251e-01   p_joint 2.260428e-03

Joint ci ratio: 5.999840e-02	ci left: 2.197444e-03	ci right 2.333884e-03	k: 4258	n:1880000
Cons ci ratio: 1.003977e-03	ci left: 8.897709e-01	ci right 8.906652e-01	k: 1673611	n:1880000
KS ci ratio: 1.109263e-01	ci left: 6.270006e-04	ci right 7.011473e-04	k: 1247	n:1880000
TMEM184A   1880000 perm   1679 sec   (1120 perm/sec)   p_kst 6.632979e-04   p_cons 8.902186e-01   p_joint 2.264894e-03

Joint ci ratio: 5.985105e-02	ci left: 2.196762e-03	ci right 2.332813e-03	k: 4279	n:1890000
Cons ci ratio: 1.001310e-03	ci left: 8.897736e-01	ci right 8.906655e-01	k: 1682516	n:1890000
KS ci ratio: 1.107048e-01	ci left: 6.262553e-04	ci right 7.001564e-04	k: 1252	n:1890000
TMEM184A   1890000 perm   1695 sec   (1115 perm/sec)   p_kst 6.624339e-04   p_cons 8.902201e-01   p_joint 2.264021e-03

Joint ci ratio: 5.967003e-02	ci left: 2.198679e-03	ci right 2.334424e-03	k: 4305	n:1900000
Cons ci ratio: 9.987202e-04	ci left: 8.897651e-01	ci right 8.906547e-01	k: 1691400	n:1900000
KS ci ratio: 1.102219e-01	ci left: 6.285887e-04	ci right 7.024207e-04	k: 1263	n:1900000
TMEM184A   1900000 perm   1711 sec   (1111 perm/sec)   p_kst 6.647368e-04   p_cons 8.902105e-01   p_joint 2.265789e-03

Joint ci ratio: 5.950441e-02	ci left: 2.199546e-03	ci right 2.334954e-03	k: 4329	n:1910000
Cons ci ratio: 9.960786e-04	ci left: 8.897710e-01	ci right 8.906582e-01	k: 1700311	n:1910000
KS ci ratio: 1.099180e-01	ci left: 6.288617e-04	ci right 7.025088e-04	k: 1270	n:1910000
TMEM184A   1910000 perm   1727 sec   (1106 perm/sec)   p_kst 6.649215e-04   p_cons 8.902152e-01   p_joint 2.266492e-03

Joint ci ratio: 5.934700e-02	ci left: 2.199892e-03	ci right 2.334950e-03	k: 4352	n:1920000
Cons ci ratio: 9.935399e-04	ci left: 8.897606e-01	ci right 8.906455e-01	k: 1709191	n:1920000
KS ci ratio: 1.096165e-01	ci left: 6.291322e-04	ci right 7.025958e-04	k: 1277	n:1920000
TMEM184A   1920000 perm   1743 sec   (1101 perm/sec)   p_kst 6.651042e-04   p_cons 8.902036e-01   p_joint 2.266667e-03

Joint ci ratio: 5.920439e-02	ci left: 2.199213e-03	ci right 2.333894e-03	k: 4373	n:1930000
Cons ci ratio: 9.909338e-04	ci left: 8.897674e-01	ci right 8.906501e-01	k: 1718104	n:1930000
KS ci ratio: 1.094454e-01	ci left: 6.278881e-04	ci right 7.010848e-04	k: 1281	n:1930000
TMEM184A   1930000 perm   1760 sec   (1097 perm/sec)   p_kst 6.637306e-04   p_cons 8.902093e-01   p_joint 2.265803e-03

Joint ci ratio: 5.906280e-02	ci left: 2.198541e-03	ci right 2.332848e-03	k: 4394	n:1940000
Cons ci ratio: 9.884028e-04	ci left: 8.897634e-01	ci right 8.906437e-01	k: 1726996	n:1940000
KS ci ratio: 1.090210e-01	ci left: 6.296655e-04	ci right 7.027663e-04	k: 1291	n:1940000
TMEM184A   1940000 perm   1776 sec   (1092 perm/sec)   p_kst 6.654639e-04   p_cons 8.902041e-01   p_joint 2.264948e-03

Joint ci ratio: 5.886880e-02	ci left: 2.201919e-03	ci right 2.335976e-03	k: 4423	n:1950000
Cons ci ratio: 9.859998e-04	ci left: 8.897378e-01	ci right 8.906160e-01	k: 1735846	n:1950000
KS ci ratio: 1.084764e-01	ci left: 6.329218e-04	ci right 7.060102e-04	k: 1304	n:1950000
TMEM184A   1950000 perm   1793 sec   (1088 perm/sec)   p_kst 6.687179e-04   p_cons 8.901774e-01   p_joint 2.268205e-03

Joint ci ratio: 5.957512e-02	ci left: 2.138407e-03	ci right 2.270213e-03	k: 4319	n:1960000
Cons ci ratio: 9.833549e-04	ci left: 8.897640e-01	ci right 8.906399e-01	k: 1744797	n:1960000
KS ci ratio: 1.083106e-01	ci left: 6.316781e-04	ci right 7.045043e-04	k: 1308	n:1960000
TMEM184A   1960000 perm   1810 sec   (1083 perm/sec)   p_kst 6.673469e-04   p_cons 8.902026e-01   p_joint 2.203571e-03

Joint ci ratio: 5.972807e-02	ci left: 2.116551e-03	ci right 2.247356e-03	k: 4297	n:1970000
Cons ci ratio: 9.809095e-04	ci left: 8.897545e-01	ci right 8.906281e-01	k: 1753678	n:1970000
KS ci ratio: 1.081456e-01	ci left: 6.304471e-04	ci right 7.030135e-04	k: 1312	n:1970000
TMEM184A   1970000 perm   1826 sec   (1079 perm/sec)   p_kst 6.659898e-04   p_cons 8.901919e-01   p_joint 2.181218e-03

Joint ci ratio: 5.958961e-02	ci left: 2.115811e-03	ci right 2.246257e-03	k: 4317	n:1980000
Cons ci ratio: 9.783583e-04	ci left: 8.897698e-01	ci right 8.906412e-01	k: 1762608	n:1980000
KS ci ratio: 1.078585e-01	ci left: 6.307028e-04	ci right 7.030938e-04	k: 1319	n:1980000
TMEM184A   1980000 perm   1843 sec   (1074 perm/sec)   p_kst 6.661616e-04   p_cons 8.902061e-01   p_joint 2.180303e-03

Joint ci ratio: 5.947960e-02	ci left: 2.113100e-03	ci right 2.243130e-03	k: 4333	n:1990000
Cons ci ratio: 9.759172e-04	ci left: 8.897668e-01	ci right 8.906361e-01	k: 1771502	n:1990000
KS ci ratio: 1.076548e-01	ci left: 6.299783e-04	ci right 7.021409e-04	k: 1324	n:1990000
TMEM184A   1990000 perm   1860 sec   (1070 perm/sec)   p_kst 6.653266e-04   p_cons 8.902020e-01   p_joint 2.177387e-03

Joint ci ratio: 6.028686e-02	ci left: 2.045893e-03	ci right 2.173556e-03	k: 4218	n:2000000
Cons ci ratio: 9.735591e-04	ci left: 8.897509e-01	ci right 8.906180e-01	k: 1780370	n:2000000
KS ci ratio: 1.074927e-01	ci left: 6.287746e-04	ci right 7.006840e-04	k: 1328	n:2000000
TMEM184A   2000000 perm   1877 sec   (1066 perm/sec)   p_kst 6.640000e-04   p_cons 8.901850e-01   p_joint 2.109000e-03

Joint ci ratio: 5.893760e-02	ci left: 2.131286e-03	ci right 2.261200e-03	k: 4413	n:2010000
Cons ci ratio: 9.710721e-04	ci left: 8.897645e-01	ci right 8.906294e-01	k: 1789297	n:2010000
KS ci ratio: 1.070505e-01	ci left: 6.309722e-04	ci right 7.028174e-04	k: 1339	n:2010000
TMEM184A   2010000 perm   1894 sec   (1061 perm/sec)   p_kst 6.661692e-04   p_cons 8.901975e-01   p_joint 2.195522e-03

Joint ci ratio: 5.883115e-02	ci left: 2.128539e-03	ci right 2.258043e-03	k: 4429	n:2020000
Cons ci ratio: 9.686286e-04	ci left: 8.897730e-01	ci right 8.906358e-01	k: 1798214	n:2020000
KS ci ratio: 1.068514e-01	ci left: 6.302576e-04	ci right 7.018796e-04	k: 1344	n:2020000
TMEM184A   2020000 perm   1911 sec   (1057 perm/sec)   p_kst 6.653465e-04   p_cons 8.902050e-01   p_joint 2.192574e-03

Joint ci ratio: 5.873853e-02	ci left: 2.124849e-03	ci right 2.253918e-03	k: 4443	n:2030000
Cons ci ratio: 9.663423e-04	ci left: 8.897533e-01	ci right 8.906140e-01	k: 1807074	n:2030000
KS ci ratio: 1.066929e-01	ci left: 6.290707e-04	ci right 7.004451e-04	k: 1348	n:2030000
TMEM184A   2030000 perm   1928 sec   (1053 perm/sec)   p_kst 6.640394e-04   p_cons 8.901842e-01   p_joint 2.188670e-03

Joint ci ratio: 5.863974e-02	ci left: 2.121678e-03	ci right 2.250330e-03	k: 4458	n:2040000
Cons ci ratio: 9.639246e-04	ci left: 8.897638e-01	ci right 8.906223e-01	k: 1815995	n:2040000
KS ci ratio: 1.064565e-01	ci left: 6.288498e-04	ci right 7.000311e-04	k: 1354	n:2040000
TMEM184A   2040000 perm   1945 sec   (1049 perm/sec)   p_kst 6.637255e-04   p_cons 8.901936e-01   p_joint 2.185294e-03

Joint ci ratio: 5.848908e-02	ci left: 2.122384e-03	ci right 2.250736e-03	k: 4481	n:2050000
Cons ci ratio: 9.615393e-04	ci left: 8.897712e-01	ci right 8.906277e-01	k: 1824910	n:2050000
KS ci ratio: 1.061436e-01	ci left: 6.295809e-04	ci right 7.006224e-04	k: 1362	n:2050000
TMEM184A   2050000 perm   1963 sec   (1045 perm/sec)   p_kst 6.643902e-04   p_cons 8.902000e-01   p_joint 2.185854e-03

Joint ci ratio: 5.835904e-02	ci left: 2.121648e-03	ci right 2.249661e-03	k: 4501	n:2060000
Cons ci ratio: 9.591359e-04	ci left: 8.897859e-01	ci right 8.906402e-01	k: 1833840	n:2060000
KS ci ratio: 1.057177e-01	ci left: 6.317231e-04	ci right 7.027025e-04	k: 1373	n:2060000
TMEM184A   2060000 perm   1980 sec   (1040 perm/sec)   p_kst 6.665049e-04   p_cons 8.902136e-01   p_joint 2.184951e-03

Joint ci ratio: 5.821052e-02	ci left: 2.122347e-03	ci right 2.250066e-03	k: 4524	n:2070000
Cons ci ratio: 9.568356e-04	ci left: 8.897830e-01	ci right 8.906352e-01	k: 1842734	n:2070000
KS ci ratio: 1.054494e-01	ci left: 6.319636e-04	ci right 7.027787e-04	k: 1380	n:2070000
TMEM184A   2070000 perm   1997 sec   (1036 perm/sec)   p_kst 6.666667e-04   p_cons 8.902097e-01   p_joint 2.185507e-03

Joint ci ratio: 5.802478e-02	ci left: 2.125884e-03	ci right 2.253393e-03	k: 4553	n:2080000
Cons ci ratio: 9.546292e-04	ci left: 8.897642e-01	ci right 8.906145e-01	k: 1851595	n:2080000
KS ci ratio: 1.051832e-01	ci left: 6.322021e-04	ci right 7.028540e-04	k: 1387	n:2080000
TMEM184A   2080000 perm   2015 sec   (1032 perm/sec)   p_kst 6.668269e-04   p_cons 8.901899e-01   p_joint 2.188942e-03

Joint ci ratio: 5.787879e-02	ci left: 2.126557e-03	ci right 2.253776e-03	k: 4576	n:2090000
Cons ci ratio: 9.524963e-04	ci left: 8.897337e-01	ci right 8.905820e-01	k: 1860431	n:2090000
KS ci ratio: 1.049189e-01	ci left: 6.324385e-04	ci right 7.029283e-04	k: 1394	n:2090000
TMEM184A   2090000 perm   2033 sec   (1028 perm/sec)   p_kst 6.669856e-04   p_cons 8.901584e-01   p_joint 2.189474e-03

Joint ci ratio: 5.700574e-02	ci left: 2.182611e-03	ci right 2.311149e-03	k: 4717	n:2100000
Cons ci ratio: 9.501345e-04	ci left: 8.897535e-01	ci right 8.905997e-01	k: 1869372	n:2100000
KS ci ratio: 1.046940e-01	ci left: 6.322091e-04	ci right 7.025130e-04	k: 1400	n:2100000
TMEM184A   2100000 perm   2050 sec   (1024 perm/sec)   p_kst 6.666667e-04   p_cons 8.901771e-01   p_joint 2.246190e-03

Joint ci ratio: 5.179684e-02	ci left: 2.636979e-03	ci right 2.777662e-03	k: 5711	n:2110000
Cons ci ratio: 9.479349e-04	ci left: 8.897432e-01	ci right 8.905875e-01	k: 1878250	n:2110000
KS ci ratio: 1.043223e-01	ci left: 6.338283e-04	ci right 7.040467e-04	k: 1410	n:2110000
TMEM184A   2110000 perm   2068 sec   (1020 perm/sec)   p_kst 6.682464e-04   p_cons 8.901659e-01   p_joint 2.706635e-03

Joint ci ratio: 5.168388e-02	ci left: 2.636180e-03	ci right 2.776504e-03	k: 5736	n:2120000
Cons ci ratio: 9.455795e-04	ci left: 8.897685e-01	ci right 8.906107e-01	k: 1887203	n:2120000
KS ci ratio: 1.040645e-01	ci left: 6.340544e-04	ci right 7.041137e-04	k: 1417	n:2120000
TMEM184A   2120000 perm   2086 sec   (1016 perm/sec)   p_kst 6.683962e-04   p_cons 8.901901e-01   p_joint 2.705660e-03

Joint ci ratio: 5.153580e-02	ci left: 2.639097e-03	ci right 2.779162e-03	k: 5769	n:2130000
Cons ci ratio: 9.432618e-04	ci left: 8.897893e-01	ci right 8.906294e-01	k: 1896147	n:2130000
KS ci ratio: 1.038450e-01	ci left: 6.338213e-04	ci right 7.036981e-04	k: 1423	n:2130000
TMEM184A   2130000 perm   2104 sec   (1012 perm/sec)   p_kst 6.680751e-04   p_cons 8.902099e-01   p_joint 2.708451e-03

Joint ci ratio: 5.138899e-02	ci left: 2.641987e-03	ci right 2.781794e-03	k: 5802	n:2140000
Cons ci ratio: 9.410645e-04	ci left: 8.897883e-01	ci right 8.906265e-01	k: 1905045	n:2140000
KS ci ratio: 1.035184e-01	ci left: 6.349561e-04	ci right 7.047244e-04	k: 1432	n:2140000
TMEM184A   2140000 perm   2122 sec   (1009 perm/sec)   p_kst 6.691589e-04   p_cons 8.902079e-01   p_joint 2.711215e-03

Joint ci ratio: 5.126985e-02	ci left: 2.642096e-03	ci right 2.781575e-03	k: 5829	n:2150000
Cons ci ratio: 9.389161e-04	ci left: 8.897804e-01	ci right 8.906167e-01	k: 1913928	n:2150000
KS ci ratio: 1.032664e-01	ci left: 6.351744e-04	ci right 7.047865e-04	k: 1439	n:2150000
TMEM184A   2150000 perm   2139 sec   (1005 perm/sec)   p_kst 6.693023e-04   p_cons 8.901991e-01   p_joint 2.711163e-03

Joint ci ratio: 5.119539e-02	ci left: 2.637633e-03	ci right 2.776668e-03	k: 5846	n:2160000
Cons ci ratio: 9.367512e-04	ci left: 8.897791e-01	ci right 8.906134e-01	k: 1922825	n:2160000
KS ci ratio: 1.029808e-01	ci left: 6.358420e-04	ci right 7.053228e-04	k: 1447	n:2160000
TMEM184A   2160000 perm   2157 sec   (1001 perm/sec)   p_kst 6.699074e-04   p_cons 8.901968e-01   p_joint 2.706481e-03

Joint ci ratio: 5.109067e-02	ci left: 2.636397e-03	ci right 2.775074e-03	k: 5870	n:2170000
Cons ci ratio: 9.345153e-04	ci left: 8.897957e-01	ci right 8.906281e-01	k: 1931761	n:2170000
KS ci ratio: 1.027681e-01	ci left: 6.356057e-04	ci right 7.049086e-04	k: 1453	n:2170000
TMEM184A   2170000 perm   2175 sec   (998 perm/sec)   p_kst 6.695853e-04   p_cons 8.902124e-01   p_joint 2.705069e-03

Joint ci ratio: 5.100396e-02	ci left: 2.633360e-03	ci right 2.771636e-03	k: 5890	n:2180000
Cons ci ratio: 9.323741e-04	ci left: 8.897957e-01	ci right 8.906262e-01	k: 1940661	n:2180000
KS ci ratio: 1.026976e-01	ci left: 6.335839e-04	ci right 7.026161e-04	k: 1455	n:2180000
TMEM184A   2180000 perm   2194 sec   (994 perm/sec)   p_kst 6.674312e-04   p_cons 8.902115e-01   p_joint 2.701835e-03

Joint ci ratio: 5.090041e-02	ci left: 2.632155e-03	ci right 2.770079e-03	k: 5914	n:2190000
Cons ci ratio: 9.300868e-04	ci left: 8.898296e-01	ci right 8.906580e-01	k: 1949635	n:2190000
KS ci ratio: 1.024516e-01	ci left: 6.338052e-04	ci right 7.026861e-04	k: 1462	n:2190000
TMEM184A   2190000 perm   2214 sec   (989 perm/sec)   p_kst 6.675799e-04   p_cons 8.902443e-01   p_joint 2.700457e-03

Joint ci ratio: 5.081037e-02	ci left: 2.629614e-03	ci right 2.767154e-03	k: 5935	n:2200000
Cons ci ratio: 9.278830e-04	ci left: 8.898490e-01	ci right 8.906755e-01	k: 1958578	n:2200000
KS ci ratio: 1.023119e-01	ci left: 6.326959e-04	ci right 7.013568e-04	k: 1466	n:2200000
TMEM184A   2200000 perm   2233 sec   (985 perm/sec)   p_kst 6.663636e-04   p_cons 8.902627e-01   p_joint 2.697727e-03

Joint ci ratio: 5.074215e-02	ci left: 2.624864e-03	ci right 2.761965e-03	k: 5951	n:2210000
Cons ci ratio: 9.257312e-04	ci left: 8.898605e-01	ci right 8.906851e-01	k: 1967504	n:2210000
KS ci ratio: 1.022075e-01	ci left: 6.311557e-04	ci right 6.995755e-04	k: 1469	n:2210000
TMEM184A   2210000 perm   2251 sec   (982 perm/sec)   p_kst 6.647059e-04   p_cons 8.902733e-01   p_joint 2.692760e-03

Joint ci ratio: 5.062321e-02	ci left: 2.625493e-03	ci right 2.762296e-03	k: 5979	n:2220000
Cons ci ratio: 9.235624e-04	ci left: 8.898787e-01	ci right 8.907014e-01	k: 1976445	n:2220000
KS ci ratio: 1.017241e-01	ci left: 6.344582e-04	ci right 7.028912e-04	k: 1483	n:2220000
TMEM184A   2220000 perm   2269 sec   (978 perm/sec)   p_kst 6.680180e-04   p_cons 8.902905e-01   p_joint 2.693243e-03

Joint ci ratio: 5.050088e-02	ci left: 2.626559e-03	ci right 2.763078e-03	k: 6008	n:2230000
Cons ci ratio: 9.214996e-04	ci left: 8.898774e-01	ci right 8.906983e-01	k: 1985343	n:2230000
KS ci ratio: 1.013152e-01	ci left: 6.368577e-04	ci right 7.052570e-04	k: 1495	n:2230000
TMEM184A   2230000 perm   2288 sec   (975 perm/sec)   p_kst 6.704036e-04   p_cons 8.902883e-01   p_joint 2.694170e-03

Joint ci ratio: 5.040036e-02	ci left: 2.625413e-03	ci right 2.761592e-03	k: 6032	n:2240000
Cons ci ratio: 9.194276e-04	ci left: 8.898811e-01	ci right 8.907001e-01	k: 1994252	n:2240000
KS ci ratio: 1.009782e-01	ci left: 6.383659e-04	ci right 7.066856e-04	k: 1505	n:2240000
TMEM184A   2240000 perm   2307 sec   (971 perm/sec)   p_kst 6.718750e-04   p_cons 8.902911e-01   p_joint 2.692857e-03

Joint ci ratio: 5.027964e-02	ci left: 2.626471e-03	ci right 2.762370e-03	k: 6061	n:2250000
Cons ci ratio: 9.172358e-04	ci left: 8.899132e-01	ci right 8.907303e-01	k: 2003225	n:2250000
KS ci ratio: 1.006777e-01	ci left: 6.394279e-04	ci right 7.076456e-04	k: 1514	n:2250000
TMEM184A   2250000 perm   2325 sec   (968 perm/sec)   p_kst 6.728889e-04   p_cons 8.903222e-01   p_joint 2.693778e-03

Joint ci ratio: 5.016391e-02	ci left: 2.627083e-03	ci right 2.762692e-03	k: 6089	n:2260000
Cons ci ratio: 9.151570e-04	ci left: 8.899242e-01	ci right 8.907394e-01	k: 2012151	n:2260000
KS ci ratio: 1.003470e-01	ci left: 6.409122e-04	ci right 7.090504e-04	k: 1524	n:2260000
TMEM184A   2260000 perm   2344 sec   (964 perm/sec)   p_kst 6.743363e-04   p_cons 8.903323e-01   p_joint 2.694248e-03

Joint ci ratio: 5.006539e-02	ci left: 2.625950e-03	ci right 2.761227e-03	k: 6113	n:2270000
Cons ci ratio: 9.130841e-04	ci left: 8.899369e-01	ci right 8.907502e-01	k: 2021081	n:2270000
KS ci ratio: 1.001175e-01	ci left: 6.410952e-04	ci right 7.090878e-04	k: 1531	n:2270000
TMEM184A   2270000 perm   2363 sec   (961 perm/sec)   p_kst 6.744493e-04   p_cons 8.903441e-01   p_joint 2.692952e-03

Joint ci ratio: 4.999195e-02	ci left: 2.622229e-03	ci right 2.757109e-03	k: 6131	n:2280000
Cons ci ratio: 9.112421e-04	ci left: 8.899029e-01	ci right 8.907146e-01	k: 2029905	n:2280000
KS ci ratio: 9.995456e-02	ci left: 6.404214e-04	ci right 7.082256e-04	k: 1536	n:2280000
TMEM184A   2280000 perm   2383 sec   (957 perm/sec)   p_kst 6.736842e-04   p_cons 8.903092e-01   p_joint 2.689035e-03

Outputting figure to mutsig2_images.part000000000177/TMEM184A.3_1274_2280000_0.00067368_0.89031_0.002689.png
                gene_name: TMEM184A
               theta_stop: 0.100 
                    nperm: 2280000 
                     p_ks: 0.00067 
        ci_ks_bounds_left: 0.00064 
       ci_ks_bounds_right: 0.00071 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0028 

Current progress: 37 percent done.
TMEM209
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
KS ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
TMEM209   10000 perm   2 sec   (5836 perm/sec)   p_kst 5.013000e-01   p_cons 6.901000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM209.3_1746_10000_0.5013_0.6901_0.834.png
                gene_name: TMEM209
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 40 percent done.
TMEM30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
Cons ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
TMEM30A   10000 perm   2 sec   (6075 perm/sec)   p_kst 1.270000e-01   p_cons 7.366000e-01   p_joint 2.580000e-01

Joint ci ratio: 5.143560e-02	ci left: 2.192280e-01	ci right 2.308520e-01	k: 4500	n:20000
Cons ci ratio: 1.657940e-02	ci left: 7.303356e-01	ci right 7.425956e-01	k: 14730	n:20000
KS ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
TMEM30A   20000 perm   4 sec   (5421 perm/sec)   p_kst 1.299500e-01   p_cons 7.365000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM30A.3_1114_20000_0.12995_0.7365_0.225.png
                gene_name: TMEM30A
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 43 percent done.
TMEM38B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
KS ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
TMEM38B   10000 perm   2 sec   (6257 perm/sec)   p_kst 8.210000e-01   p_cons 8.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM38B.3_900_10000_0.821_0.8163_1.png
                gene_name: TMEM38B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
TMEM39A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
KS ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
TMEM39A   10000 perm   2 sec   (5914 perm/sec)   p_kst 9.718000e-01   p_cons 6.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM39A.3_1499_10000_0.9718_0.6552_1.png
                gene_name: TMEM39A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
TMEM39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
Cons ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
KS ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
TMEM39B   10000 perm   2 sec   (5837 perm/sec)   p_kst 3.502000e-01   p_cons 4.873000e-01   p_joint 5.028000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM39B.3_1515_10000_0.3502_0.4873_0.5028.png
                gene_name: TMEM39B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 51 percent done.
TMEM40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052141e-02	ci left: 7.767143e-01	ci right 7.929195e-01	k: 7849	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
TMEM40   10000 perm   2 sec   (6594 perm/sec)   p_kst 5.497000e-01   p_cons 5.060000e-01   p_joint 7.849000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM40.3_746_10000_0.5497_0.506_0.7849.png
                gene_name: TMEM40
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 54 percent done.
TMEM173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
Cons ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
TMEM173   10000 perm   2 sec   (6601 perm/sec)   p_kst 7.424000e-01   p_cons 7.871000e-01   p_joint 9.942000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM173.2_1164_10000_0.7424_0.7871_0.9942.png
                gene_name: TMEM173
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 57 percent done.
TMEM176A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
Cons ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
KS ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
TMEM176A   10000 perm   1 sec   (7107 perm/sec)   p_kst 7.421000e-01   p_cons 6.055000e-01   p_joint 9.503000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM176A.2_732_10000_0.7421_0.6055_0.9503.png
                gene_name: TMEM176A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 60 percent done.
TMEM176B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
Cons ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
KS ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
TMEM176B   10000 perm   1 sec   (7075 perm/sec)   p_kst 4.024000e-01   p_cons 7.876000e-01   p_joint 7.374000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM176B.2_837_10000_0.4024_0.7876_0.7374.png
                gene_name: TMEM176B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 63 percent done.
TMEM181
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
Cons ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
KS ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
TMEM181   10000 perm   2 sec   (6219 perm/sec)   p_kst 5.290000e-01   p_cons 4.108000e-01   p_joint 2.831000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM181.2_1907_10000_0.529_0.4108_0.2831.png
                gene_name: TMEM181
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 66 percent done.
TMEM182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
Cons ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
KS ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
TMEM182   10000 perm   1 sec   (7119 perm/sec)   p_kst 2.851000e-01   p_cons 6.983000e-01   p_joint 4.243000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM182.2_710_10000_0.2851_0.6983_0.4243.png
                gene_name: TMEM182
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 69 percent done.
TMEM190
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
Cons ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
KS ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
TMEM190   10000 perm   1 sec   (7174 perm/sec)   p_kst 8.482000e-01   p_cons 1.326000e-01   p_joint 2.136000e-01

Joint ci ratio: 2.037927e-02	ci left: 6.424394e-01	ci right 6.557172e-01	k: 12982	n:20000
Cons ci ratio: 7.098530e-02	ci left: 1.275838e-01	ci right 1.370234e-01	k: 2645	n:20000
KS ci ratio: 1.190622e-02	ci left: 8.391495e-01	ci right 8.492502e-01	k: 16885	n:20000
TMEM190   20000 perm   3 sec   (6307 perm/sec)   p_kst 8.442500e-01   p_cons 1.322500e-01   p_joint 6.491000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM190.2_554_20000_0.84425_0.13225_0.6491.png
                gene_name: TMEM190
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 71 percent done.
TMEM194A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
Cons ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
KS ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
TMEM194A   10000 perm   2 sec   (6474 perm/sec)   p_kst 2.367000e-01   p_cons 2.005000e-01   p_joint 2.114000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM194A.2_1371_10000_0.2367_0.2005_0.2114.png
                gene_name: TMEM194A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 74 percent done.
TMEM196
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
Cons ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
TMEM196   10000 perm   1 sec   (7198 perm/sec)   p_kst 7.860000e-02   p_cons 7.555000e-01   p_joint 2.611000e-01

Joint ci ratio: 2.026756e-02	ci left: 6.449500e-01	ci right 6.582059e-01	k: 13032	n:20000
Cons ci ratio: 1.577705e-02	ci left: 7.492800e-01	ci right 7.612457e-01	k: 15106	n:20000
KS ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
TMEM196   20000 perm   3 sec   (6299 perm/sec)   p_kst 7.580000e-02   p_cons 7.553000e-01   p_joint 6.516000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM196.2_535_20000_0.0758_0.7553_0.6516.png
                gene_name: TMEM196
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 77 percent done.
TMEM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.831486e-03	ci left: 9.577516e-01	ci right 9.653765e-01	k: 9617	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
TMEM20   10000 perm   2 sec   (6580 perm/sec)   p_kst 7.612000e-01   p_cons 2.686000e-01   p_joint 9.617000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM20.2_1110_10000_0.7612_0.2686_0.9617.png
                gene_name: TMEM20
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 80 percent done.
TMEM202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
KS ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
TMEM202   10000 perm   1 sec   (6737 perm/sec)   p_kst 9.192000e-01   p_cons 6.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM202.2_842_10000_0.9192_0.6137_1.png
                gene_name: TMEM202
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TMEM207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
Cons ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
KS ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
TMEM207   10000 perm   1 sec   (7231 perm/sec)   p_kst 3.548000e-01   p_cons 6.423000e-01   p_joint 5.450000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM207.2_461_10000_0.3548_0.6423_0.545.png
                gene_name: TMEM207
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 86 percent done.
TMEM214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
Cons ci ratio: 2.619972e-02	ci left: 6.820403e-01	ci right 7.002483e-01	k: 6912	n:10000
KS ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
TMEM214   10000 perm   2 sec   (6090 perm/sec)   p_kst 5.342000e-01   p_cons 6.912000e-01   p_joint 8.292000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM214.2_2138_10000_0.5342_0.6912_0.8292.png
                gene_name: TMEM214
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 89 percent done.
TMEM225
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
KS ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
TMEM225   10000 perm   1 sec   (6839 perm/sec)   p_kst 7.505000e-01   p_cons 8.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM225.2_694_10000_0.7505_0.8849_1.png
                gene_name: TMEM225
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TMEM231
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
KS ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
TMEM231   10000 perm   1 sec   (6679 perm/sec)   p_kst 2.672000e-01   p_cons 6.613000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM231.2_1072_10000_0.2672_0.6613_1.png
                gene_name: TMEM231
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TMEM26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
TMEM26   10000 perm   2 sec   (6607 perm/sec)   p_kst 4.040000e-01   p_cons 3.893000e-01   p_joint 7.947000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM26.2_1131_10000_0.404_0.3893_0.7947.png
                gene_name: TMEM26
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 97 percent done.
TMEM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
Cons ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
KS ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
TMEM43   10000 perm   2 sec   (6404 perm/sec)   p_kst 5.846000e-01   p_cons 3.398000e-01   p_joint 5.086000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM43.2_1251_10000_0.5846_0.3398_0.5086.png
                gene_name: TMEM43
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000177
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 177 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 4422625: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000178> was used as the working directory.
Started at Wed Oct 24 18:09:30 2012
Results reported at Wed Oct 24 18:21:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000178.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000178.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 178  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000178.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    413.78 sec.
    Max Memory :      5261 MB
    Max Swap   :      7852 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
178
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 178
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 178: processing genes 16014 - 16104
Calculating significance of each gene.
Using projection method.
16014	TMEM45A	1
16015	TMEM45B	6.847687e-01
16016	TMEM47	9.947697e-03
16017	TMEM48	9.394861e-01
16018	TMEM49	3.288430e-01
16019	TMEM5	1
16020	TMEM50A	1
16021	TMEM50B	1
16022	TMEM51	4.954201e-01
16023	TMEM52	1
16024	TMEM53	3.824327e-01
16025	TMEM54	1
16026	TMEM55A	1.774809e-01
16027	TMEM55B	5.371205e-01
16028	TMEM56	1
16029	TMEM57	8.948981e-01
16030	TMEM59	1
16031	TMEM59L	1
16032	TMEM60	1
16033	TMEM61	1
16034	TMEM62	9.305951e-01
16035	TMEM63A	5.154130e-01
16036	TMEM63B	9.385367e-01
16037	TMEM63C	9.412396e-01
16038	TMEM64	1
16039	TMEM65	5.894868e-01
16040	TMEM66	3.596919e-01
16041	TMEM67	4.101586e-01
16042	TMEM68	6.754572e-01
16043	TMEM69	1
16044	TMEM70	1
16045	TMEM71	1.443446e-01
16046	TMEM72	8.625382e-02
16047	TMEM74	1.823067e-01
In gene TMEM79 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 1197    n = 1	mu =   4.02e-07
16048	TMEM79	4.439697e-01
16049	TMEM80	1
16050	TMEM81	2.873363e-01
16051	TMEM82	5.286280e-01
16052	TMEM85	2.859786e-01
16053	TMEM86A	7.214342e-01
16054	TMEM86B	1
16055	TMEM87A	7.987739e-01
16056	TMEM87B	4.289025e-01
16057	TMEM88	3.763597e-01
16058	TMEM89	3.015566e-01
16059	TMEM8A	9.760970e-01
16060	TMEM8B	1
16061	TMEM8C	2.340015e-01
16062	TMEM9	2.444474e-01
16063	TMEM90A	4.890752e-01
16064	TMEM90B	1
16065	TMEM91	8.053773e-01
16066	TMEM92	1
16067	TMEM93	1
16068	TMEM95	4.904906e-01
16069	TMEM97	1
16070	TMEM98	1
16071	TMEM99	7.361861e-01
16072	TMEM9B	1
16073	TMF1	1
16074	TMIE	1
16075	TMIGD1	1
16076	TMIGD2	4.398950e-01
16077	TMLHE	4.485916e-01
16078	TMOD1	3.231249e-01
16079	TMOD2	8.865790e-01
16080	TMOD3	5.303816e-01
16081	TMOD4	1
16082	TMPO	9.953258e-01
16083	TMPPE	7.342497e-01
16084	TMPRSS11A	2.197761e-01
16085	TMPRSS11B	6.305496e-01
16086	TMPRSS11D	7.565271e-01
16087	TMPRSS11E	1
16088	TMPRSS11F	4.534462e-03
16089	TMPRSS12	1.603991e-01
16090	TMPRSS13	1
16091	TMPRSS15	7.757887e-02
16092	TMPRSS2	9.100421e-01
16093	TMPRSS3	8.901216e-01
16094	TMPRSS4	6.080129e-01
16095	TMPRSS5	1
16096	TMPRSS6	8.919192e-01
16097	TMPRSS7	5.869652e-01
16098	TMPRSS9	9.871661e-01
16099	TMSB10	1
16100	TMSB15A	1
16101	TMSB15B	1
16102	TMSB4X	1
16103	TMSB4Y	1
16104	TMSL3	1.773100e-01
Done

Running MutSig 2:
Scatter job 178: processing genes 16014 - 16104
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMPRSS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
KS ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
TMPRSS15   10000 perm   3 sec   (3517 perm/sec)   p_kst 9.754000e-01   p_cons 9.052000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS15.13_3160_10000_0.9754_0.9052_1.png
                gene_name: TMPRSS15
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
TMPRSS11F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
Cons ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KS ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
TMPRSS11F   10000 perm   2 sec   (6232 perm/sec)   p_kst 2.771000e-01   p_cons 2.872000e-01   p_joint 3.264000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11F.8_1357_10000_0.2771_0.2872_0.3264.png
                gene_name: TMPRSS11F
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 4 percent done.
TMEM67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
TMEM67   10000 perm   2 sec   (5697 perm/sec)   p_kst 7.109000e-01   p_cons 1.881000e-01   p_joint 4.283000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM67.6_3238_10000_0.7109_0.1881_0.4283.png
                gene_name: TMEM67
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 7 percent done.
TMPRSS11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
Cons ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
KS ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
TMPRSS11A   10000 perm   1 sec   (6961 perm/sec)   p_kst 4.428000e-01   p_cons 9.041000e-01   p_joint 7.504000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11A.6_1306_10000_0.4428_0.9041_0.7504.png
                gene_name: TMPRSS11A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 9 percent done.
TMPRSS11B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.716135e-02	ci left: 6.663243e-01	ci right 6.847734e-01	k: 6756	n:10000
KS ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
TMPRSS11B   10000 perm   2 sec   (6606 perm/sec)   p_kst 7.487000e-01   p_cons 6.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS11B.5_1291_10000_0.7487_0.6756_1.png
                gene_name: TMPRSS11B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
TMEM63A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
Cons ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
KS ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
TMEM63A   10000 perm   2 sec   (5425 perm/sec)   p_kst 6.652000e-01   p_cons 3.062000e-01   p_joint 7.405000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63A.5_2512_10000_0.6652_0.3062_0.7405.png
                gene_name: TMEM63A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 13 percent done.
TMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.316274e-02	ci left: 7.324964e-01	ci right 7.497629e-01	k: 7412	n:10000
KS ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
TMF1   10000 perm   2 sec   (5005 perm/sec)   p_kst 8.580000e-01   p_cons 7.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMF1.5_3350_10000_0.858_0.7412_1.png
                gene_name: TMF1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
TMPRSS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
TMPRSS7   10000 perm   2 sec   (5852 perm/sec)   p_kst 3.053000e-01   p_cons 5.719000e-01   p_joint 5.362000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS7.5_2214_10000_0.3053_0.5719_0.5362.png
                gene_name: TMPRSS7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 18 percent done.
TMEM66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
Cons ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
KS ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
TMEM66   10000 perm   2 sec   (5879 perm/sec)   p_kst 5.549000e-01   p_cons 3.027000e-01   p_joint 5.436000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM66.4_1044_10000_0.5549_0.3027_0.5436.png
                gene_name: TMEM66
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 20 percent done.
TMEM71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
Cons ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
TMEM71   10000 perm   2 sec   (5963 perm/sec)   p_kst 8.096000e-01   p_cons 1.338000e-01   p_joint 3.761000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM71.4_924_10000_0.8096_0.1338_0.3761.png
                gene_name: TMEM71
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 22 percent done.
TMEM72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
Cons ci ratio: 3.458791e-02	ci left: 5.524094e-01	ci right 5.719544e-01	k: 5622	n:10000
KS ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
TMEM72   10000 perm   2 sec   (5785 perm/sec)   p_kst 5.595000e-01   p_cons 5.622000e-01   p_joint 6.709000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM72.4_848_10000_0.5595_0.5622_0.6709.png
                gene_name: TMEM72
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 24 percent done.
TMEM74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
TMEM74   10000 perm   2 sec   (6050 perm/sec)   p_kst 9.123000e-01   p_cons 6.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM74.4_922_10000_0.9123_0.6011_1.png
                gene_name: TMEM74
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
TMEM79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
Cons ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
KS ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
TMEM79   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.566000e-01   p_cons 5.222000e-01   p_joint 6.839000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM79.4_1197_10000_0.3566_0.5222_0.6839.png
                gene_name: TMEM79
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
TMEM87A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
Cons ci ratio: 9.813094e-03	ci left: 9.363056e-01	ci right 9.456355e-01	k: 9411	n:10000
KS ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
TMEM87A   10000 perm   2 sec   (5764 perm/sec)   p_kst 3.531000e-01   p_cons 9.411000e-01   p_joint 6.066000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM87A.4_1794_10000_0.3531_0.9411_0.6066.png
                gene_name: TMEM87A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 31 percent done.
TMEM87B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
Cons ci ratio: 8.010044e-03	ci left: 9.559730e-01	ci right 9.637562e-01	k: 9600	n:10000
KS ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
TMEM87B   10000 perm   1 sec   (6882 perm/sec)   p_kst 5.740000e-01   p_cons 9.600000e-01   p_joint 8.220000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM87B.4_1744_10000_0.574_0.96_0.822.png
                gene_name: TMEM87B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 33 percent done.
TMPRSS11D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
TMPRSS11D   10000 perm   1 sec   (6670 perm/sec)   p_kst 1.611000e-01   p_cons 8.211000e-01   p_joint 3.642000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11D.4_1297_10000_0.1611_0.8211_0.3642.png
                gene_name: TMPRSS11D
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 36 percent done.
TMPRSS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
Cons ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
KS ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
TMPRSS6   10000 perm   2 sec   (5213 perm/sec)   p_kst 9.798000e-01   p_cons 2.999000e-01   p_joint 7.186000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS6.4_2508_10000_0.9798_0.2999_0.7186.png
                gene_name: TMPRSS6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 38 percent done.
TMEM47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
Cons ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
KS ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
TMEM47   10000 perm   2 sec   (6553 perm/sec)   p_kst 8.261000e-01   p_cons 4.350000e-01   p_joint 7.476000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM47.3_558_10000_0.8261_0.435_0.7476.png
                gene_name: TMEM47
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 40 percent done.
TMEM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
TMEM49   10000 perm   1 sec   (7245 perm/sec)   p_kst 3.010000e-02   p_cons 1.231000e-01   p_joint 3.640000e-02

Joint ci ratio: 1.390823e-01	ci left: 3.553751e-02	ci right 4.089781e-02	k: 763	n:20000
Cons ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
KS ci ratio: 1.526953e-01	ci left: 2.945960e-02	ci right 3.437773e-02	k: 637	n:20000
TMEM49   20000 perm   3 sec   (6186 perm/sec)   p_kst 3.185000e-02   p_cons 1.028000e-01   p_joint 3.815000e-02

Joint ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
Cons ci ratio: 6.705428e-02	ci left: 9.882710e-02	ci right 1.057168e-01	k: 3067	n:30000
KS ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
TMEM49   30000 perm   5 sec   (5608 perm/sec)   p_kst 3.490000e-02   p_cons 1.022333e-01   p_joint 5.180000e-02

Joint ci ratio: 1.003441e-01	ci left: 3.490299e-02	ci right 3.861465e-02	k: 1469	n:40000
Cons ci ratio: 5.206473e-02	ci left: 1.208839e-01	ci right 1.273708e-01	k: 4964	n:40000
KS ci ratio: 1.049121e-01	ci left: 3.195298e-02	ci right 3.551513e-02	k: 1348	n:40000
TMEM49   40000 perm   7 sec   (5456 perm/sec)   p_kst 3.370000e-02   p_cons 1.241000e-01   p_joint 3.672500e-02

Joint ci ratio: 8.958634e-02	ci left: 3.522541e-02	ci right 3.854864e-02	k: 1843	n:50000
Cons ci ratio: 4.665083e-02	ci left: 1.208458e-01	ci right 1.266379e-01	k: 6186	n:50000
KS ci ratio: 9.375733e-02	ci left: 3.219402e-02	ci right 3.538041e-02	k: 1688	n:50000
TMEM49   50000 perm   10 sec   (5194 perm/sec)   p_kst 3.376000e-02   p_cons 1.237200e-01   p_joint 3.686000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM49.3_1265_50000_0.03376_0.12372_0.03686.png
                gene_name: TMEM49
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 42 percent done.
TMEM55A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
TMEM55A   10000 perm   2 sec   (6525 perm/sec)   p_kst 8.386000e-01   p_cons 1.024000e-01   p_joint 4.026000e-01

Joint ci ratio: 3.375126e-02	ci left: 3.959424e-01	ci right 4.095859e-01	k: 8055	n:20000
Cons ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
KS ci ratio: 1.215420e-02	ci left: 8.335790e-01	ci right 8.438223e-01	k: 16775	n:20000
TMEM55A   20000 perm   4 sec   (5656 perm/sec)   p_kst 8.387500e-01   p_cons 1.029500e-01   p_joint 4.027500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM55A.3_802_20000_0.83875_0.10295_0.40275.png
                gene_name: TMEM55A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 44 percent done.
TMEM63C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.719645e-02	ci left: 2.452932e-01	ci right 2.624504e-01	k: 2538	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
TMEM63C   10000 perm   2 sec   (6164 perm/sec)   p_kst 5.966000e-01   p_cons 5.840000e-02   p_joint 2.538000e-01

Joint ci ratio: 6.659724e-02	ci left: 1.427106e-01	ci right 1.525920e-01	k: 2952	n:20000
Cons ci ratio: 1.165856e-01	ci left: 5.037280e-02	ci right 5.665781e-02	k: 1069	n:20000
KS ci ratio: 2.268044e-02	ci left: 5.921185e-01	ci right 6.057527e-01	k: 11979	n:20000
TMEM63C   20000 perm   4 sec   (5339 perm/sec)   p_kst 5.989500e-01   p_cons 5.345000e-02   p_joint 1.476000e-01

Joint ci ratio: 3.333845e-02	ci left: 3.101764e-01	ci right 3.207260e-01	k: 9463	n:30000
Cons ci ratio: 9.024786e-02	ci left: 5.649034e-02	ci right 6.186209e-02	k: 1774	n:30000
KS ci ratio: 1.868826e-02	ci left: 5.889853e-01	ci right 6.001298e-01	k: 17837	n:30000
TMEM63C   30000 perm   6 sec   (4966 perm/sec)   p_kst 5.945667e-01   p_cons 5.913333e-02   p_joint 3.154333e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63C.3_2509_30000_0.59457_0.059133_0.31543.png
                gene_name: TMEM63C
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 47 percent done.
TMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.960770e-02	ci left: 3.747510e-01	ci right 3.939164e-01	k: 3843	n:10000
Cons ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
TMOD1   10000 perm   2 sec   (6317 perm/sec)   p_kst 9.249000e-01   p_cons 3.720000e-02   p_joint 3.843000e-01

Joint ci ratio: 3.529736e-02	ci left: 3.746609e-01	ci right 3.881736e-01	k: 7628	n:20000
Cons ci ratio: 1.405228e-01	ci left: 3.481282e-02	ci right 4.012274e-02	k: 748	n:20000
KS ci ratio: 7.903146e-03	ci left: 9.211092e-01	ci right 9.284668e-01	k: 18497	n:20000
TMOD1   20000 perm   4 sec   (5519 perm/sec)   p_kst 9.248500e-01   p_cons 3.740000e-02   p_joint 3.814000e-01

Joint ci ratio: 2.798812e-02	ci left: 3.897945e-01	ci right 4.008925e-01	k: 11860	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 6.375516e-03	ci left: 9.234889e-01	ci right 9.294282e-01	k: 27795	n:30000
TMOD1   30000 perm   5 sec   (5461 perm/sec)   p_kst 9.265000e-01   p_cons 3.653333e-02   p_joint 3.953333e-01

Joint ci ratio: 2.432564e-02	ci left: 3.888326e-01	ci right 3.984328e-01	k: 15745	n:40000
Cons ci ratio: 1.008437e-01	ci left: 3.456149e-02	ci right 3.825621e-02	k: 1455	n:40000
KS ci ratio: 5.491703e-03	ci left: 9.246357e-01	ci right 9.297521e-01	k: 37089	n:40000
TMOD1   40000 perm   7 sec   (5373 perm/sec)   p_kst 9.272250e-01   p_cons 3.637500e-02   p_joint 3.936250e-01

Joint ci ratio: 2.115120e-02	ci left: 4.028890e-01	ci right 4.115218e-01	k: 20360	n:50000
Cons ci ratio: 9.055963e-02	ci left: 3.448192e-02	ci right 3.777222e-02	k: 1805	n:50000
KS ci ratio: 4.919992e-03	ci left: 9.246850e-01	ci right 9.292653e-01	k: 46350	n:50000
TMOD1   50000 perm   9 sec   (5293 perm/sec)   p_kst 9.270000e-01   p_cons 3.610000e-02   p_joint 4.072000e-01

Outputting figure to mutsig2_images.part000000000178/TMOD1.3_1116_50000_0.927_0.0361_0.4072.png
                gene_name: TMOD1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 49 percent done.
TMPRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
Cons ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
KS ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
TMPRSS12   10000 perm   1 sec   (7447 perm/sec)   p_kst 3.322000e-01   p_cons 2.121000e-01   p_joint 3.096000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS12.3_1067_10000_0.3322_0.2121_0.3096.png
                gene_name: TMPRSS12
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
TMPRSS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
TMPRSS4   10000 perm   1 sec   (7047 perm/sec)   p_kst 4.853000e-01   p_cons 5.252000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS4.3_1366_10000_0.4853_0.5252_0.6985.png
                gene_name: TMPRSS4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
TMEM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
TMEM5   10000 perm   1 sec   (7497 perm/sec)   p_kst 1.922000e-01   p_cons 5.432000e-01   p_joint 4.042000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM5.2_1356_10000_0.1922_0.5432_0.4042.png
                gene_name: TMEM5
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 56 percent done.
TMEM51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
Cons ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
TMEM51   10000 perm   1 sec   (8218 perm/sec)   p_kst 6.706000e-01   p_cons 4.835000e-01   p_joint 9.653000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM51.2_770_10000_0.6706_0.4835_0.9653.png
                gene_name: TMEM51
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 58 percent done.
TMEM53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
Cons ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
KS ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
TMEM53   10000 perm   1 sec   (7209 perm/sec)   p_kst 1.647000e-01   p_cons 7.616000e-01   p_joint 9.157000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM53.2_846_10000_0.1647_0.7616_0.9157.png
                gene_name: TMEM53
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 60 percent done.
TMEM57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
Cons ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
KS ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
TMEM57   10000 perm   2 sec   (6325 perm/sec)   p_kst 7.880000e-02   p_cons 4.906000e-01   p_joint 3.549000e-01

Joint ci ratio: 1.104952e-02	ci left: 8.580554e-01	ci right 8.676389e-01	k: 17258	n:20000
Cons ci ratio: 2.800064e-02	ci left: 4.879470e-01	ci right 5.018545e-01	k: 9898	n:20000
KS ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
TMEM57   20000 perm   4 sec   (5560 perm/sec)   p_kst 7.900000e-02   p_cons 4.949000e-01   p_joint 8.629000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM57.2_2039_20000_0.079_0.4949_0.8629.png
                gene_name: TMEM57
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 62 percent done.
TMEM63B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
Cons ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
KS ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
TMEM63B   10000 perm   2 sec   (5803 perm/sec)   p_kst 7.977000e-01   p_cons 7.330000e-02   p_joint 2.727000e-01

Joint ci ratio: 4.694540e-02	ci left: 2.523932e-01	ci right 2.645771e-01	k: 5169	n:20000
Cons ci ratio: 1.028190e-01	ci left: 6.425622e-02	ci right 7.127008e-02	k: 1354	n:20000
KS ci ratio: 1.409301e-02	ci left: 7.889334e-01	ci right 8.001808e-01	k: 15892	n:20000
TMEM63B   20000 perm   4 sec   (5167 perm/sec)   p_kst 7.946000e-01   p_cons 6.770000e-02   p_joint 2.584500e-01

Joint ci ratio: 3.406741e-02	ci left: 3.009535e-01	ci right 3.114174e-01	k: 9185	n:30000
Cons ci ratio: 8.374221e-02	ci left: 6.520923e-02	ci right 7.094143e-02	k: 2041	n:30000
KS ci ratio: 1.153972e-02	ci left: 7.890424e-01	ci right 7.982339e-01	k: 23810	n:30000
TMEM63B   30000 perm   6 sec   (4928 perm/sec)   p_kst 7.936667e-01   p_cons 6.803333e-02   p_joint 3.061667e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63B.2_2591_30000_0.79367_0.068033_0.30617.png
                gene_name: TMEM63B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 64 percent done.
TMEM81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
Cons ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
KS ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
TMEM81   10000 perm   1 sec   (6833 perm/sec)   p_kst 5.683000e-01   p_cons 1.588000e-01   p_joint 4.306000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM81.2_772_10000_0.5683_0.1588_0.4306.png
                gene_name: TMEM81
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 67 percent done.
TMEM82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
Cons ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
KS ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
TMEM82   10000 perm   2 sec   (5733 perm/sec)   p_kst 7.392000e-01   p_cons 2.298000e-01   p_joint 4.354000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM82.2_1056_10000_0.7392_0.2298_0.4354.png
                gene_name: TMEM82
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 69 percent done.
TMEM85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.428769e-02	ci left: 4.294418e-01	ci right 4.489936e-01	k: 4392	n:10000
Cons ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
KS ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
TMEM85   10000 perm   1 sec   (6882 perm/sec)   p_kst 4.844000e-01   p_cons 1.936000e-01   p_joint 4.392000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM85.2_572_10000_0.4844_0.1936_0.4392.png
                gene_name: TMEM85
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 71 percent done.
TMEM89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
TMEM89   10000 perm   1 sec   (7283 perm/sec)   p_kst 5.133000e-01   p_cons 9.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM89.2_487_10000_0.5133_0.9352_1.png
                gene_name: TMEM89
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
TMEM8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
KS ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
TMEM8B   10000 perm   2 sec   (5681 perm/sec)   p_kst 3.746000e-01   p_cons 1.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM8B.2_1649_10000_0.3746_0.1339_1.png
                gene_name: TMEM8B
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TMEM8C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
Cons ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
TMEM8C   10000 perm   4 sec   (2430 perm/sec)   p_kst 1.680000e-02   p_cons 9.195000e-01   p_joint 8.490000e-02

Joint ci ratio: 1.221762e-01	ci left: 4.595193e-02	ci right 5.198006e-02	k: 978	n:20000
Cons ci ratio: 8.422757e-03	ci left: 9.115596e-01	ci right 9.193191e-01	k: 18310	n:20000
KS ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
TMEM8C   20000 perm   7 sec   (2788 perm/sec)   p_kst 1.560000e-02   p_cons 9.155000e-01   p_joint 4.890000e-02

Joint ci ratio: 8.123043e-02	ci left: 6.909987e-02	ci right 7.498333e-02	k: 2160	n:30000
Cons ci ratio: 6.821766e-03	ci left: 9.135498e-01	ci right 9.198359e-01	k: 27502	n:30000
KS ci ratio: 1.846502e-01	ci left: 1.343225e-02	ci right 1.619621e-02	k: 443	n:30000
TMEM8C   30000 perm   11 sec   (2719 perm/sec)   p_kst 1.476667e-02   p_cons 9.167333e-01   p_joint 7.200000e-02

Joint ci ratio: 7.009043e-02	ci left: 6.997737e-02	ci right 7.508490e-02	k: 2900	n:40000
Cons ci ratio: 5.911818e-03	ci left: 9.138730e-01	ci right 9.193163e-01	k: 36665	n:40000
KS ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
TMEM8C   40000 perm   15 sec   (2655 perm/sec)   p_kst 1.447500e-02   p_cons 9.166250e-01   p_joint 7.250000e-02

Joint ci ratio: 8.286376e-02	ci left: 4.106206e-02	ci right 4.463126e-02	k: 2141	n:50000
Cons ci ratio: 5.275991e-03	ci left: 9.145070e-01	ci right 9.193644e-01	k: 45848	n:50000
KS ci ratio: 1.459611e-01	ci left: 1.318122e-02	ci right 1.527573e-02	k: 710	n:50000
TMEM8C   50000 perm   19 sec   (2605 perm/sec)   p_kst 1.420000e-02   p_cons 9.169600e-01   p_joint 4.282000e-02

Joint ci ratio: 7.617815e-02	ci left: 4.065426e-02	ci right 4.389020e-02	k: 2535	n:60000
Cons ci ratio: 4.836023e-03	ci left: 9.140893e-01	ci right 9.185370e-01	k: 54980	n:60000
KS ci ratio: 1.330226e-01	ci left: 1.331688e-02	ci right 1.523053e-02	k: 855	n:60000
TMEM8C   60000 perm   23 sec   (2555 perm/sec)   p_kst 1.425000e-02   p_cons 9.163333e-01   p_joint 4.225000e-02

Joint ci ratio: 7.031256e-02	ci left: 4.101746e-02	ci right 4.402061e-02	k: 2975	n:70000
Cons ci ratio: 4.463190e-03	ci left: 9.147440e-01	ci right 9.188499e-01	k: 64177	n:70000
KS ci ratio: 1.228228e-01	ci left: 1.346123e-02	ci right 1.523650e-02	k: 1003	n:70000
TMEM8C   70000 perm   28 sec   (2507 perm/sec)   p_kst 1.432857e-02   p_cons 9.168143e-01   p_joint 4.250000e-02

Joint ci ratio: 6.593502e-02	ci left: 4.091565e-02	ci right 4.371767e-02	k: 3384	n:80000
Cons ci ratio: 4.181789e-03	ci left: 9.146248e-01	ci right 9.184699e-01	k: 73325	n:80000
KS ci ratio: 1.159420e-01	ci left: 1.327011e-02	ci right 1.491541e-02	k: 1126	n:80000
TMEM8C   80000 perm   32 sec   (2464 perm/sec)   p_kst 1.407500e-02   p_cons 9.165625e-01   p_joint 4.230000e-02

Joint ci ratio: 6.231919e-02	ci left: 4.079724e-02	ci right 4.343238e-02	k: 3789	n:90000
Cons ci ratio: 3.937056e-03	ci left: 9.149542e-01	ci right 9.185745e-01	k: 82510	n:90000
KS ci ratio: 1.094810e-01	ci left: 1.327498e-02	ci right 1.482324e-02	k: 1263	n:90000
TMEM8C   90000 perm   37 sec   (2428 perm/sec)   p_kst 1.403333e-02   p_cons 9.167778e-01   p_joint 4.210000e-02

Joint ci ratio: 5.941724e-02	ci left: 4.046932e-02	ci right 4.295735e-02	k: 4170	n:100000
Cons ci ratio: 3.755957e-03	ci left: 9.141829e-01	ci right 9.176329e-01	k: 91592	n:100000
KS ci ratio: 1.042189e-01	ci left: 1.322246e-02	ci right 1.468593e-02	k: 1394	n:100000
TMEM8C   100000 perm   42 sec   (2379 perm/sec)   p_kst 1.394000e-02   p_cons 9.159200e-01   p_joint 4.170000e-02

Joint ci ratio: 5.682750e-02	ci left: 4.028411e-02	ci right 4.264924e-02	k: 4560	n:110000
Cons ci ratio: 3.584786e-03	ci left: 9.141068e-01	ci right 9.173985e-01	k: 100734	n:110000
KS ci ratio: 9.981505e-02	ci left: 1.313663e-02	ci right 1.452555e-02	k: 1520	n:110000
TMEM8C   110000 perm   47 sec   (2345 perm/sec)   p_kst 1.381818e-02   p_cons 9.157636e-01   p_joint 4.145455e-02

Outputting figure to mutsig2_images.part000000000178/TMEM8C.2_686_110000_0.013818_0.91576_0.041455.png
                gene_name: TMEM8C
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 78 percent done.
TMEM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.245076e-02	ci left: 7.444244e-01	ci right 7.614280e-01	k: 7530	n:10000
Cons ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
KS ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
TMEM9   10000 perm   1 sec   (7198 perm/sec)   p_kst 4.925000e-01   p_cons 3.275000e-01   p_joint 7.530000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM9.2_572_10000_0.4925_0.3275_0.753.png
                gene_name: TMEM9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 80 percent done.
TMEM90A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
Cons ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KS ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
TMEM90A   10000 perm   1 sec   (6928 perm/sec)   p_kst 1.097000e-01   p_cons 9.331000e-01   p_joint 8.679000e-01

Joint ci ratio: 4.673813e-02	ci left: 2.540800e-01	ci right 2.662898e-01	k: 5203	n:20000
Cons ci ratio: 7.556837e-03	ci left: 9.272458e-01	ci right 9.343283e-01	k: 18617	n:20000
KS ci ratio: 7.878237e-02	ci left: 1.057938e-01	ci right 1.145199e-01	k: 2202	n:20000
TMEM90A   20000 perm   11 sec   (1876 perm/sec)   p_kst 1.101000e-01   p_cons 9.308500e-01   p_joint 2.601500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM90A.2_729_20000_0.1101_0.93085_0.26015.png
                gene_name: TMEM90A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 82 percent done.
TMEM90B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
TMEM90B   10000 perm   1 sec   (6944 perm/sec)   p_kst 4.584000e-01   p_cons 9.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM90B.2_789_10000_0.4584_0.9213_1.png
                gene_name: TMEM90B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
TMIGD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
TMIGD1   10000 perm   2 sec   (6177 perm/sec)   p_kst 6.629000e-01   p_cons 1.909000e-01   p_joint 5.268000e-01

Outputting figure to mutsig2_images.part000000000178/TMIGD1.2_813_10000_0.6629_0.1909_0.5268.png
                gene_name: TMIGD1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 87 percent done.
TMIGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
Cons ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
KS ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
TMIGD2   10000 perm   2 sec   (5932 perm/sec)   p_kst 7.577000e-01   p_cons 9.904000e-01   p_joint 9.896000e-01

Outputting figure to mutsig2_images.part000000000178/TMIGD2.2_869_10000_0.7577_0.9904_0.9896.png
                gene_name: TMIGD2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
TMLHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
Cons ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
KS ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
TMLHE   10000 perm   2 sec   (5382 perm/sec)   p_kst 7.528000e-01   p_cons 4.740000e-01   p_joint 9.350000e-01

Outputting figure to mutsig2_images.part000000000178/TMLHE.2_1434_10000_0.7528_0.474_0.935.png
                gene_name: TMLHE
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
TMOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
TMOD3   10000 perm   2 sec   (5881 perm/sec)   p_kst 3.958000e-01   p_cons 3.087000e-01   p_joint 8.920000e-01

Outputting figure to mutsig2_images.part000000000178/TMOD3.2_1095_10000_0.3958_0.3087_0.892.png
                gene_name: TMOD3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 93 percent done.
TMPPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
KS ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
TMPPE   10000 perm   2 sec   (5626 perm/sec)   p_kst 6.120000e-02   p_cons 9.066000e-01   p_joint 3.199000e-01

Joint ci ratio: 1.133732e-02	ci left: 8.517673e-01	ci right 8.615288e-01	k: 17134	n:20000
Cons ci ratio: 8.601069e-03	ci left: 9.081927e-01	ci right 9.160870e-01	k: 18244	n:20000
KS ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
TMPPE   20000 perm   6 sec   (3179 perm/sec)   p_kst 6.125000e-02   p_cons 9.122000e-01   p_joint 8.567000e-01

Joint ci ratio: 1.210715e-02	ci left: 7.727500e-01	ci right 7.821962e-01	k: 23325	n:30000
Cons ci ratio: 7.050037e-03	ci left: 9.082972e-01	ci right 9.147562e-01	k: 27347	n:30000
KS ci ratio: 8.858866e-02	ci left: 5.854619e-02	ci right 6.400582e-02	k: 1837	n:30000
TMPPE   30000 perm   11 sec   (2742 perm/sec)   p_kst 6.123333e-02   p_cons 9.115667e-01   p_joint 7.775000e-01

Outputting figure to mutsig2_images.part000000000178/TMPPE.2_1366_30000_0.061233_0.91157_0.7775.png
                gene_name: TMPPE
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 96 percent done.
TMPRSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
Cons ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
KS ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
TMPRSS2   10000 perm   7 sec   (1480 perm/sec)   p_kst 1.067000e-01   p_cons 3.394000e-01   p_joint 9.646000e-01

Joint ci ratio: 5.699960e-02	ci left: 1.857702e-01	ci right 1.967197e-01	k: 3824	n:20000
Cons ci ratio: 3.829878e-02	ci left: 3.371159e-01	ci right 3.503296e-01	k: 6874	n:20000
KS ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
TMPRSS2   20000 perm   13 sec   (1508 perm/sec)   p_kst 1.094500e-01   p_cons 3.437000e-01   p_joint 1.912000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS2.2_1646_20000_0.10945_0.3437_0.1912.png
                gene_name: TMPRSS2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 98 percent done.
TMPRSS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
KS ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
TMPRSS9   10000 perm   3 sec   (3263 perm/sec)   p_kst 4.139000e-01   p_cons 9.529000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS9.2_3247_10000_0.4139_0.9529_1.png
                gene_name: TMPRSS9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000178
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 178 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1556>
Subject: Job 4422629: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1556>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000179> was used as the working directory.
Started at Wed Oct 24 18:09:44 2012
Results reported at Wed Oct 24 18:22:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000179.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000179.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 179  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000179.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    929.49 sec.
    Max Memory :      5349 MB
    Max Swap   :      7627 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
179
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 179
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 179: processing genes 16105 - 16194
Calculating significance of each gene.
Using projection method.
16105	TMTC1	4.811840e-11
16106	TMTC2	8.717598e-01
16107	TMTC3	5.509744e-02
16108	TMTC4	2.791671e-01
16109	TMUB1	7.515442e-01
16110	TMUB2	1
16111	TMX1	1
16112	TMX2	3.661638e-01
16113	TMX3	5.096085e-01
16114	TMX4	1
16115	TNC	9.990756e-01
16116	TNF	1
16117	TNFAIP1	1
16118	TNFAIP2	8.508843e-01
16119	TNFAIP3	1
16120	TNFAIP6	6.217837e-01
16121	TNFAIP8	3.151124e-01
16122	TNFAIP8L1	1
16123	TNFAIP8L2	1
16124	TNFAIP8L3	1.647248e-02
16125	TNFRSF10A	1
16126	TNFRSF10B	8.402119e-01
16127	TNFRSF10C	6.764007e-01
16128	TNFRSF10D	8.930255e-01
16129	TNFRSF11A	3.321156e-02
16130	TNFRSF11B	1
16131	TNFRSF12A	4.857331e-01
16132	TNFRSF13B	7.330632e-01
16133	TNFRSF13C	1
16134	TNFRSF14	1
16135	TNFRSF17	1
16136	TNFRSF18	5.932509e-01
16137	TNFRSF19	8.041440e-01
16138	TNFRSF1A	1
16139	TNFRSF1B	8.829982e-01
16140	TNFRSF21	9.136844e-01
16141	TNFRSF25	9.587041e-01
16142	TNFRSF4	3.869981e-01
16143	TNFRSF6B	1
16144	TNFRSF8	1
16145	TNFRSF9	6.900814e-02
16146	TNFSF10	6.667226e-01
16147	TNFSF11	6.048455e-01
16148	TNFSF12	1
16149	TNFSF12-TNFSF13	1
16150	TNFSF13	1
16151	TNFSF13B	6.393246e-01
16152	TNFSF14	8.080477e-01
16153	TNFSF15	5.346476e-01
16154	TNFSF18	5.952429e-01
16155	TNFSF4	9.604322e-02
16156	TNFSF8	7.400423e-01
16157	TNFSF9	6.463461e-01
16158	TNIK	7.950276e-01
16159	TNIP1	9.523183e-01
16160	TNIP2	1
16161	TNIP3	4.119082e-01
16162	TNK1	8.606494e-01
16163	TNK2	9.762027e-01
16164	TNKS	9.917050e-01
16165	TNKS1BP1	9.851267e-01
16166	TNKS2	5.422489e-01
16167	TNMD	4.567451e-01
16168	TNN	2.702099e-02
16169	TNNC1	1
16170	TNNC2	6.366518e-01
16171	TNNI1	4.556648e-01
16172	TNNI2	1.681988e-02
16173	TNNI3	1.979976e-01
16174	TNNI3K	2.169499e-02
16175	TNNT1	1
16176	TNNT2	1.270662e-01
16177	TNNT3	1.947678e-01
16178	TNP1	1
16179	TNP2	1.120162e-01
16180	TNPO1	8.308507e-01
16181	TNPO2	7.830362e-01
16182	TNPO3	9.249481e-01
16183	TNR	1
16184	TNRC18	9.762812e-01
16185	TNRC6A	7.197195e-01
16186	TNRC6B	9.994451e-01
16187	TNRC6C	9.495434e-01
16188	TNS1	3.154193e-01
16189	TNS3	8.247573e-01
16190	TNS4	8.587040e-01
16191	TNXB	1
16192	TOB1	6.102414e-01
16193	TOB2	1.744483e-01
16194	TOE1	8.240490e-01
Done

Running MutSig 2:
Scatter job 179: processing genes 16105 - 16194
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
TNR   10000 perm   4 sec   (2825 perm/sec)   p_kst 1.857000e-01   p_cons 5.060000e-02   p_joint 4.410000e-02

Joint ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
Cons ci ratio: 1.190752e-01	ci left: 4.833156e-02	ci right 5.449968e-02	k: 1027	n:20000
KS ci ratio: 5.801444e-02	ci left: 1.804306e-01	ci right 1.912609e-01	k: 3716	n:20000
TNR   20000 perm   10 sec   (1936 perm/sec)   p_kst 1.858000e-01   p_cons 5.135000e-02   p_joint 5.140000e-02

Joint ci ratio: 8.684030e-02	ci left: 6.083153e-02	ci right 6.638669e-02	k: 1907	n:30000
Cons ci ratio: 9.719201e-02	ci left: 4.892819e-02	ci right 5.395913e-02	k: 1542	n:30000
KS ci ratio: 4.705036e-02	ci left: 1.834603e-01	ci right 1.923335e-01	k: 5636	n:30000
TNR   30000 perm   14 sec   (2093 perm/sec)   p_kst 1.878667e-01   p_cons 5.140000e-02   p_joint 6.356667e-02

Outputting figure to mutsig2_images.part000000000179/TNR.40_4161_30000_0.18787_0.0514_0.063567.png
                gene_name: TNR
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 2 percent done.
TNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972988e-02	ci left: 6.252749e-01	ci right 6.442466e-01	k: 6348	n:10000
Cons ci ratio: 2.810815e-02	ci left: 6.510225e-01	ci right 6.696841e-01	k: 6604	n:10000
KS ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
TNN   10000 perm   3 sec   (3240 perm/sec)   p_kst 3.917000e-01   p_cons 6.604000e-01   p_joint 6.348000e-01

Outputting figure to mutsig2_images.part000000000179/TNN.34_3972_10000_0.3917_0.6604_0.6348.png
                gene_name: TNN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 4 percent done.
TMTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
Cons ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
KS ci ratio: 1.487993e-02	ci left: 8.674390e-01	ci right 8.805423e-01	k: 8741	n:10000
TMTC1   10000 perm   3 sec   (3681 perm/sec)   p_kst 8.741000e-01   p_cons 1.050000e-01   p_joint 4.908000e-01

Joint ci ratio: 3.616949e-02	ci left: 3.632533e-01	ci right 3.766845e-01	k: 7399	n:20000
Cons ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
KS ci ratio: 8.153260e-03	ci left: 9.165623e-01	ci right 9.241150e-01	k: 18408	n:20000
TMTC1   20000 perm   6 sec   (3398 perm/sec)   p_kst 9.204000e-01   p_cons 1.018000e-01   p_joint 3.699500e-01

Outputting figure to mutsig2_images.part000000000179/TMTC1.32_2393_20000_0.9204_0.1018_0.36995.png
                gene_name: TMTC1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 7 percent done.
TNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
Cons ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
KS ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
TNC   10000 perm   3 sec   (2907 perm/sec)   p_kst 3.989000e-01   p_cons 8.020000e-02   p_joint 1.777000e-01

Joint ci ratio: 5.525524e-02	ci left: 1.954648e-01	ci right 2.066223e-01	k: 4020	n:20000
Cons ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
KS ci ratio: 3.407967e-02	ci left: 3.913061e-01	ci right 4.049235e-01	k: 7962	n:20000
TNC   20000 perm   7 sec   (2718 perm/sec)   p_kst 3.981000e-01   p_cons 7.785000e-02   p_joint 2.010000e-01

Outputting figure to mutsig2_images.part000000000179/TNC.21_6714_20000_0.3981_0.07785_0.201.png
                gene_name: TNC
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
TNXB
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
TNXB   10000 perm   5 sec   (2095 perm/sec)   p_kst 3.650000e-02   p_cons 1.179000e-01   p_joint 1.108000e-01

Joint ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
Cons ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
KS ci ratio: 1.428166e-01	ci left: 3.370219e-02	ci right 3.893373e-02	k: 725	n:20000
TNXB   20000 perm   10 sec   (1977 perm/sec)   p_kst 3.625000e-02   p_cons 1.186000e-01   p_joint 5.010000e-02

Joint ci ratio: 1.409503e-01	ci left: 2.335931e-02	ci right 2.693346e-02	k: 753	n:30000
Cons ci ratio: 6.367279e-02	ci left: 1.085838e-01	ci right 1.157581e-01	k: 3364	n:30000
KS ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
TNXB   30000 perm   16 sec   (1930 perm/sec)   p_kst 3.606667e-02   p_cons 1.121333e-01   p_joint 2.510000e-02

Joint ci ratio: 1.153736e-01	ci left: 2.642943e-02	ci right 2.968957e-02	k: 1121	n:40000
Cons ci ratio: 5.610959e-02	ci left: 1.056904e-01	ci right 1.118166e-01	k: 4349	n:40000
KS ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
TNXB   40000 perm   21 sec   (1899 perm/sec)   p_kst 3.565000e-02   p_cons 1.087250e-01   p_joint 2.802500e-02

Joint ci ratio: 1.001662e-01	ci left: 2.822938e-02	ci right 3.122555e-02	k: 1485	n:50000
Cons ci ratio: 4.870843e-02	ci left: 1.118797e-01	ci right 1.174851e-01	k: 5733	n:50000
KS ci ratio: 9.100494e-02	ci left: 3.414937e-02	ci right 3.742481e-02	k: 1788	n:50000
TNXB   50000 perm   27 sec   (1872 perm/sec)   p_kst 3.576000e-02   p_cons 1.146600e-01   p_joint 2.970000e-02

Joint ci ratio: 9.227424e-02	ci left: 2.785099e-02	ci right 3.056147e-02	k: 1751	n:60000
Cons ci ratio: 4.442010e-02	ci left: 1.123256e-01	ci right 1.174450e-01	k: 6892	n:60000
KS ci ratio: 8.293177e-02	ci left: 3.440921e-02	ci right 3.740257e-02	k: 2153	n:60000
TNXB   60000 perm   32 sec   (1848 perm/sec)   p_kst 3.588333e-02   p_cons 1.148667e-01   p_joint 2.918333e-02

Outputting figure to mutsig2_images.part000000000179/TNXB.15_14886_60000_0.035883_0.11487_0.029183.png
                gene_name: TNXB
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 11 percent done.
TNNI3K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
KS ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
TNNI3K   10000 perm   2 sec   (4336 perm/sec)   p_kst 8.889000e-01   p_cons 9.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNNI3K.14_2963_10000_0.8889_0.9089_1.png
                gene_name: TNNI3K
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
TNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
Cons ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
KS ci ratio: 2.157537e-02	ci left: 7.590934e-01	ci right 7.757506e-01	k: 7675	n:10000
TNS1   10000 perm   3 sec   (3376 perm/sec)   p_kst 7.675000e-01   p_cons 9.289000e-01   p_joint 9.445000e-01

Outputting figure to mutsig2_images.part000000000179/TNS1.14_5320_10000_0.7675_0.9289_0.9445.png
                gene_name: TNS1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 16 percent done.
TNKS1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
Cons ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
KS ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
TNKS1BP1   10000 perm   3 sec   (3706 perm/sec)   p_kst 6.120000e-02   p_cons 6.635000e-01   p_joint 1.287000e-01

Joint ci ratio: 7.644287e-02	ci left: 1.117405e-01	ci right 1.206714e-01	k: 2323	n:20000
Cons ci ratio: 2.016724e-02	ci left: 6.472097e-01	ci right 6.604456e-01	k: 13077	n:20000
KS ci ratio: 1.081846e-01	ci left: 5.825809e-02	ci right 6.497006e-02	k: 1231	n:20000
TNKS1BP1   20000 perm   6 sec   (3401 perm/sec)   p_kst 6.155000e-02   p_cons 6.538500e-01   p_joint 1.161500e-01

Joint ci ratio: 6.105631e-02	ci left: 1.170995e-01	ci right 1.245074e-01	k: 3623	n:30000
Cons ci ratio: 1.634986e-02	ci left: 6.516635e-01	ci right 6.624394e-01	k: 19712	n:30000
KS ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
TNKS1BP1   30000 perm   9 sec   (3274 perm/sec)   p_kst 6.096667e-02   p_cons 6.570667e-01   p_joint 1.207667e-01

Outputting figure to mutsig2_images.part000000000179/TNKS1BP1.10_5230_30000_0.060967_0.65707_0.12077.png
                gene_name: TNKS1BP1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
TMTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
TMTC3   10000 perm   2 sec   (4581 perm/sec)   p_kst 7.817000e-01   p_cons 6.004000e-01   p_joint 8.720000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC3.9_2797_10000_0.7817_0.6004_0.872.png
                gene_name: TMTC3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 20 percent done.
TNRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
Cons ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
KS ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
TNRC6A   10000 perm   3 sec   (3661 perm/sec)   p_kst 7.060000e-01   p_cons 3.600000e-03   p_joint 1.440000e-02

Joint ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
Cons ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
KS ci ratio: 1.802686e-02	ci left: 6.963616e-01	ci right 7.090794e-01	k: 14055	n:20000
TNRC6A   20000 perm   6 sec   (3305 perm/sec)   p_kst 7.027500e-01   p_cons 3.700000e-03   p_joint 2.080000e-02

Joint ci ratio: 1.212501e-01	ci left: 3.162187e-02	ci right 3.573575e-02	k: 1009	n:30000
Cons ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
KS ci ratio: 1.458700e-02	ci left: 7.013107e-01	ci right 7.116493e-01	k: 21195	n:30000
TNRC6A   30000 perm   9 sec   (3204 perm/sec)   p_kst 7.065000e-01   p_cons 4.266667e-03   p_joint 3.363333e-02

Joint ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
Cons ci ratio: 3.073562e-01	ci left: 3.428260e-03	ci right 4.695408e-03	k: 161	n:40000
KS ci ratio: 1.258938e-02	ci left: 7.034414e-01	ci right 7.123784e-01	k: 28317	n:40000
TNRC6A   40000 perm   13 sec   (3101 perm/sec)   p_kst 7.079250e-01   p_cons 4.025000e-03   p_joint 2.650000e-02

Joint ci ratio: 1.019111e-01	ci left: 2.727346e-02	ci right 3.022160e-02	k: 1436	n:50000
Cons ci ratio: 2.673890e-01	ci left: 3.708066e-03	ci right 4.870645e-03	k: 213	n:50000
KS ci ratio: 1.128060e-02	ci left: 7.031694e-01	ci right 7.111666e-01	k: 35359	n:50000
TNRC6A   50000 perm   16 sec   (3050 perm/sec)   p_kst 7.071800e-01   p_cons 4.260000e-03   p_joint 2.872000e-02

Joint ci ratio: 9.329393e-02	ci left: 2.724824e-02	ci right 2.993095e-02	k: 1714	n:60000
Cons ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
KS ci ratio: 1.018298e-02	ci left: 7.081574e-01	ci right 7.154221e-01	k: 42708	n:60000
TNRC6A   60000 perm   20 sec   (3007 perm/sec)   p_kst 7.118000e-01   p_cons 4.300000e-03   p_joint 2.856667e-02

Joint ci ratio: 8.706653e-02	ci left: 2.691618e-02	ci right 2.938028e-02	k: 1969	n:70000
Cons ci ratio: 2.156066e-01	ci left: 4.193291e-03	ci right 5.219858e-03	k: 328	n:70000
KS ci ratio: 9.428935e-03	ci left: 7.083715e-01	ci right 7.150966e-01	k: 49822	n:70000
TNRC6A   70000 perm   24 sec   (2963 perm/sec)   p_kst 7.117429e-01   p_cons 4.685714e-03   p_joint 2.812857e-02

Joint ci ratio: 8.284394e-02	ci left: 2.609597e-02	ci right 2.836349e-02	k: 2177	n:80000
Cons ci ratio: 2.011449e-01	ci left: 4.249713e-03	ci right 5.211746e-03	k: 377	n:80000
KS ci ratio: 8.814441e-03	ci left: 7.088482e-01	ci right 7.151364e-01	k: 56960	n:80000
TNRC6A   80000 perm   27 sec   (2921 perm/sec)   p_kst 7.120000e-01   p_cons 4.712500e-03   p_joint 2.721250e-02

Joint ci ratio: 8.262348e-02	ci left: 2.339091e-02	ci right 2.541768e-02	k: 2195	n:90000
Cons ci ratio: 1.877108e-01	ci left: 4.369511e-03	ci right 5.285076e-03	k: 433	n:90000
KS ci ratio: 8.313042e-03	ci left: 7.088955e-01	ci right 7.148242e-01	k: 64068	n:90000
TNRC6A   90000 perm   31 sec   (2873 perm/sec)   p_kst 7.118667e-01   p_cons 4.811111e-03   p_joint 2.438889e-02

Joint ci ratio: 8.272678e-02	ci left: 2.105076e-02	ci right 2.287711e-02	k: 2195	n:100000
Cons ci ratio: 1.800054e-01	ci left: 4.295060e-03	ci right 5.154055e-03	k: 471	n:100000
KS ci ratio: 7.908881e-03	ci left: 7.078785e-01	ci right 7.135092e-01	k: 71070	n:100000
TNRC6A   100000 perm   35 sec   (2836 perm/sec)   p_kst 7.107000e-01   p_cons 4.710000e-03   p_joint 2.195000e-02

Joint ci ratio: 8.118523e-02	ci left: 1.991127e-02	ci right 2.160504e-02	k: 2282	n:110000
Cons ci ratio: 1.716617e-01	ci left: 4.313079e-03	ci right 5.131553e-03	k: 518	n:110000
KS ci ratio: 7.538992e-03	ci left: 7.081106e-01	ci right 7.134783e-01	k: 78188	n:110000
TNRC6A   110000 perm   39 sec   (2801 perm/sec)   p_kst 7.108000e-01   p_cons 4.709091e-03   p_joint 2.074545e-02

Joint ci ratio: 7.884419e-02	ci left: 1.938695e-02	ci right 2.098636e-02	k: 2421	n:120000
Cons ci ratio: 1.761842e-01	ci left: 3.746321e-03	ci right 4.477964e-03	k: 492	n:120000
KS ci ratio: 7.216282e-03	ci left: 7.083258e-01	ci right 7.134640e-01	k: 85308	n:120000
TNRC6A   120000 perm   43 sec   (2765 perm/sec)   p_kst 7.109000e-01   p_cons 4.100000e-03   p_joint 2.017500e-02

Joint ci ratio: 7.046221e-02	ci left: 2.243384e-02	ci right 2.407983e-02	k: 3022	n:130000
Cons ci ratio: 1.666427e-01	ci left: 3.885190e-03	ci right 4.598741e-03	k: 550	n:130000
KS ci ratio: 6.936166e-03	ci left: 7.082497e-01	ci right 7.131870e-01	k: 92394	n:130000
TNRC6A   130000 perm   48 sec   (2731 perm/sec)   p_kst 7.107231e-01   p_cons 4.230769e-03   p_joint 2.324615e-02

Joint ci ratio: 6.775582e-02	ci left: 2.255825e-02	ci right 2.414729e-02	k: 3268	n:140000
Cons ci ratio: 1.600919e-01	ci left: 3.922824e-03	ci right 4.612242e-03	k: 596	n:140000
KS ci ratio: 6.677384e-03	ci left: 7.087393e-01	ci right 7.134948e-01	k: 99557	n:140000
TNRC6A   140000 perm   52 sec   (2697 perm/sec)   p_kst 7.111214e-01   p_cons 4.257143e-03   p_joint 2.334286e-02

Joint ci ratio: 6.426145e-02	ci left: 2.342821e-02	ci right 2.499025e-02	k: 3630	n:150000
Cons ci ratio: 1.554764e-01	ci left: 3.891822e-03	ci right 4.554234e-03	k: 632	n:150000
KS ci ratio: 6.456224e-03	ci left: 7.084848e-01	ci right 7.130804e-01	k: 106618	n:150000
TNRC6A   150000 perm   56 sec   (2663 perm/sec)   p_kst 7.107867e-01   p_cons 4.213333e-03   p_joint 2.420000e-02

Joint ci ratio: 6.300950e-02	ci left: 2.287402e-02	ci right 2.436831e-02	k: 3778	n:160000
Cons ci ratio: 1.512383e-01	ci left: 3.864946e-03	ci right 4.503227e-03	k: 668	n:160000
KS ci ratio: 6.248445e-03	ci left: 7.087406e-01	ci right 7.131892e-01	k: 113755	n:160000
TNRC6A   160000 perm   61 sec   (2630 perm/sec)   p_kst 7.109688e-01   p_cons 4.175000e-03   p_joint 2.361250e-02

Joint ci ratio: 6.365119e-02	ci left: 2.112842e-02	ci right 2.252324e-02	k: 3709	n:170000
Cons ci ratio: 1.461880e-01	ci left: 3.903786e-03	ci right 4.525074e-03	k: 715	n:170000
KS ci ratio: 6.068190e-03	ci left: 7.083788e-01	ci right 7.126963e-01	k: 120792	n:170000
TNRC6A   170000 perm   65 sec   (2598 perm/sec)   p_kst 7.105412e-01   p_cons 4.205882e-03   p_joint 2.181765e-02

Joint ci ratio: 6.224968e-02	ci left: 2.088412e-02	ci right 2.223135e-02	k: 3879	n:180000
Cons ci ratio: 1.429350e-01	ci left: 3.863606e-03	ci right 4.463648e-03	k: 748	n:180000
KS ci ratio: 5.892157e-03	ci left: 7.087940e-01	ci right 7.129881e-01	k: 127961	n:180000
TNRC6A   180000 perm   70 sec   (2568 perm/sec)   p_kst 7.108944e-01   p_cons 4.155556e-03   p_joint 2.155000e-02

Joint ci ratio: 6.024122e-02	ci left: 2.114287e-02	ci right 2.246125e-02	k: 4141	n:190000
Cons ci ratio: 1.392653e-01	ci left: 3.863353e-03	ci right 4.446673e-03	k: 788	n:190000
KS ci ratio: 5.734120e-03	ci left: 7.089137e-01	ci right 7.129956e-01	k: 135082	n:190000
TNRC6A   190000 perm   75 sec   (2539 perm/sec)   p_kst 7.109579e-01   p_cons 4.147368e-03   p_joint 2.179474e-02

Joint ci ratio: 5.935930e-02	ci left: 2.070616e-02	ci right 2.197776e-02	k: 4267	n:200000
Cons ci ratio: 1.355365e-01	ci left: 3.882625e-03	ci right 4.451894e-03	k: 832	n:200000
KS ci ratio: 5.589513e-03	ci left: 7.089227e-01	ci right 7.129012e-01	k: 142183	n:200000
TNRC6A   200000 perm   80 sec   (2510 perm/sec)   p_kst 7.109150e-01   p_cons 4.160000e-03   p_joint 2.133500e-02

Joint ci ratio: 5.793139e-02	ci left: 2.071957e-02	ci right 2.196036e-02	k: 4480	n:210000
Cons ci ratio: 1.323195e-01	ci left: 3.886436e-03	ci right 4.441674e-03	k: 873	n:210000
KS ci ratio: 5.456080e-03	ci left: 7.088747e-01	ci right 7.127576e-01	k: 149272	n:210000
TNRC6A   210000 perm   85 sec   (2483 perm/sec)   p_kst 7.108190e-01   p_cons 4.157143e-03   p_joint 2.133333e-02

Joint ci ratio: 5.654030e-02	ci left: 2.077692e-02	ci right 2.199028e-02	k: 4703	n:220000
Cons ci ratio: 1.284779e-01	ci left: 3.942838e-03	ci right 4.488534e-03	k: 926	n:220000
KS ci ratio: 5.326346e-03	ci left: 7.092511e-01	ci right 7.130434e-01	k: 156453	n:220000
TNRC6A   220000 perm   90 sec   (2454 perm/sec)   p_kst 7.111500e-01   p_cons 4.209091e-03   p_joint 2.137727e-02

Joint ci ratio: 4.979350e-02	ci left: 2.558538e-02	ci right 2.689616e-02	k: 6034	n:230000
Cons ci ratio: 1.166375e-01	ci left: 4.601819e-03	ci right 5.175985e-03	k: 1123	n:230000
KS ci ratio: 5.211392e-03	ci left: 7.091252e-01	ci right 7.128347e-01	k: 163526	n:230000
TNRC6A   230000 perm   95 sec   (2428 perm/sec)   p_kst 7.109826e-01   p_cons 4.882609e-03   p_joint 2.623478e-02

Joint ci ratio: 4.714840e-02	ci left: 2.733537e-02	ci right 2.865940e-02	k: 6718	n:240000
Cons ci ratio: 1.142243e-01	ci left: 4.604302e-03	ci right 5.166091e-03	k: 1171	n:240000
KS ci ratio: 5.104347e-03	ci left: 7.089481e-01	ci right 7.125802e-01	k: 170584	n:240000
TNRC6A   240000 perm   100 sec   (2400 perm/sec)   p_kst 7.107667e-01   p_cons 4.879167e-03   p_joint 2.799167e-02

Joint ci ratio: 4.730231e-02	ci left: 2.610321e-02	ci right 2.737179e-02	k: 6683	n:250000
Cons ci ratio: 1.120010e-01	ci left: 4.602811e-03	ci right 5.152765e-03	k: 1218	n:250000
KS ci ratio: 5.001495e-03	ci left: 7.089622e-01	ci right 7.125209e-01	k: 177686	n:250000
TNRC6A   250000 perm   105 sec   (2374 perm/sec)   p_kst 7.107440e-01   p_cons 4.872000e-03   p_joint 2.673200e-02

Joint ci ratio: 4.703916e-02	ci left: 2.540309e-02	ci right 2.663059e-02	k: 6763	n:260000
Cons ci ratio: 1.102093e-01	ci left: 4.575347e-03	ci right 5.112706e-03	k: 1258	n:260000
KS ci ratio: 4.903747e-03	ci left: 7.090491e-01	ci right 7.125385e-01	k: 184807	n:260000
TNRC6A   260000 perm   111 sec   (2346 perm/sec)   p_kst 7.107962e-01   p_cons 4.838462e-03   p_joint 2.601154e-02

Joint ci ratio: 5.051269e-02	ci left: 2.126710e-02	ci right 2.237283e-02	k: 5890	n:270000
Cons ci ratio: 1.082917e-01	ci left: 4.568001e-03	ci right 5.094567e-03	k: 1303	n:270000
KS ci ratio: 4.816371e-03	ci left: 7.087147e-01	ci right 7.121400e-01	k: 191816	n:270000
TNRC6A   270000 perm   117 sec   (2316 perm/sec)   p_kst 7.104296e-01   p_cons 4.825926e-03   p_joint 2.181481e-02

Joint ci ratio: 4.998518e-02	ci left: 2.095535e-02	ci right 2.203316e-02	k: 6017	n:280000
Cons ci ratio: 1.065502e-01	ci left: 4.554301e-03	ci right 5.070316e-03	k: 1346	n:280000
KS ci ratio: 4.727789e-03	ci left: 7.089020e-01	ci right 7.122650e-01	k: 198964	n:280000
TNRC6A   280000 perm   122 sec   (2291 perm/sec)   p_kst 7.105857e-01   p_cons 4.807143e-03   p_joint 2.148929e-02

Joint ci ratio: 4.784067e-02	ci left: 2.208598e-02	ci right 2.317187e-02	k: 6561	n:290000
Cons ci ratio: 1.048144e-01	ci left: 4.548326e-03	ci right 5.054751e-03	k: 1391	n:290000
KS ci ratio: 4.645633e-03	ci left: 7.089250e-01	ci right 7.122294e-01	k: 206068	n:290000
TNRC6A   290000 perm   128 sec   (2268 perm/sec)   p_kst 7.105793e-01   p_cons 4.796552e-03   p_joint 2.262414e-02

Joint ci ratio: 4.679129e-02	ci left: 2.232484e-02	ci right 2.339774e-02	k: 6857	n:300000
Cons ci ratio: 1.032329e-01	ci left: 4.536318e-03	ci right 5.033323e-03	k: 1434	n:300000
KS ci ratio: 4.653293e-03	ci left: 7.012311e-01	ci right 7.045050e-01	k: 210861	n:300000
TNRC6A   300000 perm   134 sec   (2245 perm/sec)   p_kst 7.028700e-01   p_cons 4.780000e-03   p_joint 2.285667e-02

Joint ci ratio: 4.607568e-02	ci left: 2.229017e-02	ci right 2.334459e-02	k: 7072	n:310000
Cons ci ratio: 1.013769e-01	ci left: 4.556581e-03	ci right 5.046295e-03	k: 1487	n:310000
KS ci ratio: 4.578675e-03	ci left: 7.011618e-01	ci right 7.043828e-01	k: 217860	n:310000
TNRC6A   310000 perm   139 sec   (2224 perm/sec)   p_kst 7.027742e-01   p_cons 4.796774e-03   p_joint 2.281290e-02

Joint ci ratio: 4.637826e-02	ci left: 2.133080e-02	ci right 2.234664e-02	k: 6987	n:320000
Cons ci ratio: 1.000096e-01	ci left: 4.539084e-03	ci right 5.019952e-03	k: 1528	n:320000
KS ci ratio: 4.507366e-03	ci left: 7.011130e-01	ci right 7.042834e-01	k: 224864	n:320000
TNRC6A   320000 perm   145 sec   (2203 perm/sec)   p_kst 7.027000e-01   p_cons 4.775000e-03   p_joint 2.183437e-02

Joint ci ratio: 4.600204e-02	ci left: 2.103479e-02	ci right 2.202819e-02	k: 7104	n:330000
Cons ci ratio: 9.885440e-02	ci left: 4.507910e-03	ci right 4.979639e-03	k: 1564	n:330000
KS ci ratio: 4.439964e-03	ci left: 7.010037e-01	ci right 7.041261e-01	k: 231847	n:330000
TNRC6A   330000 perm   151 sec   (2182 perm/sec)   p_kst 7.025667e-01   p_cons 4.739394e-03   p_joint 2.152727e-02

Outputting figure to mutsig2_images.part000000000179/TNRC6A.9_5989_330000_0.70257_0.0047394_0.021527.png
                gene_name: TNRC6A
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.0047 
      ci_cons_bounds_left: 0.0045 
     ci_cons_bounds_right: 0.0050 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 22 percent done.
TNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
Cons ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
KS ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
TNS3   10000 perm   2 sec   (4074 perm/sec)   p_kst 9.960000e-02   p_cons 9.061000e-01   p_joint 2.336000e-01

Joint ci ratio: 5.298767e-02	ci left: 2.091251e-01	ci right 2.205579e-01	k: 4296	n:20000
Cons ci ratio: 9.080975e-03	ci left: 8.989164e-01	ci right 9.071660e-01	k: 18062	n:20000
KS ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
TNS3   20000 perm   5 sec   (3700 perm/sec)   p_kst 1.040500e-01   p_cons 9.031000e-01   p_joint 2.148000e-01

Outputting figure to mutsig2_images.part000000000179/TNS3.9_4442_20000_0.10405_0.9031_0.2148.png
                gene_name: TNS3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 24 percent done.
TMTC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
Cons ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TMTC4   10000 perm   2 sec   (4711 perm/sec)   p_kst 1   p_cons 6.065000e-01   p_joint 9.341000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC4.8_2355_10000_1_0.6065_0.9341.png
                gene_name: TMTC4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 27 percent done.
TNRC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
Cons ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
KS ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
TNRC18   10000 perm   4 sec   (2818 perm/sec)   p_kst 3.003000e-01   p_cons 7.180000e-02   p_joint 1.025000e-01

Joint ci ratio: 6.978939e-02	ci left: 1.314745e-01	ci right 1.410316e-01	k: 2724	n:20000
Cons ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
KS ci ratio: 4.239115e-02	ci left: 2.931068e-01	ci right 3.058515e-01	k: 5989	n:20000
TNRC18   20000 perm   8 sec   (2653 perm/sec)   p_kst 2.994500e-01   p_cons 6.965000e-02   p_joint 1.362000e-01

Joint ci ratio: 5.630323e-02	ci left: 1.351696e-01	ci right 1.430338e-01	k: 4172	n:30000
Cons ci ratio: 8.043108e-02	ci left: 7.040824e-02	ci right 7.634137e-02	k: 2200	n:30000
KS ci ratio: 3.455735e-02	ci left: 2.949500e-01	ci right 3.053554e-01	k: 9004	n:30000
TNRC18   30000 perm   12 sec   (2574 perm/sec)   p_kst 3.001333e-01   p_cons 7.333333e-02   p_joint 1.390667e-01

Outputting figure to mutsig2_images.part000000000179/TNRC18.8_9023_30000_0.30013_0.073333_0.13907.png
                gene_name: TNRC18
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
TNFRSF11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
Cons ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
KS ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
TNFRSF11A   10000 perm   2 sec   (5361 perm/sec)   p_kst 3.990000e-01   p_cons 2.079000e-01   p_joint 3.266000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF11A.7_1891_10000_0.399_0.2079_0.3266.png
                gene_name: TNFRSF11A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
TNIK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
Cons ci ratio: 3.899088e-02	ci left: 4.927508e-01	ci right 5.124477e-01	k: 5026	n:10000
KS ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
TNIK   10000 perm   2 sec   (4147 perm/sec)   p_kst 8.314000e-01   p_cons 5.026000e-01   p_joint 7.331000e-01

Outputting figure to mutsig2_images.part000000000179/TNIK.7_4215_10000_0.8314_0.5026_0.7331.png
                gene_name: TNIK
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 33 percent done.
TNKS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
TNKS2   10000 perm   2 sec   (4469 perm/sec)   p_kst 8.878000e-01   p_cons 1.261000e-01   p_joint 6.863000e-01

Joint ci ratio: 2.120260e-02	ci left: 6.241183e-01	ci right 6.375436e-01	k: 12617	n:20000
Cons ci ratio: 7.406493e-02	ci left: 1.182814e-01	ci right 1.274285e-01	k: 2456	n:20000
KS ci ratio: 9.884763e-03	ci left: 8.827343e-01	ci right 8.915528e-01	k: 17744	n:20000
TNKS2   20000 perm   5 sec   (3972 perm/sec)   p_kst 8.872000e-01   p_cons 1.228000e-01   p_joint 6.308500e-01

Outputting figure to mutsig2_images.part000000000179/TNKS2.6_3609_20000_0.8872_0.1228_0.63085.png
                gene_name: TNKS2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
TNRC6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
TNRC6C   10000 perm   2 sec   (4349 perm/sec)   p_kst 3.298000e-01   p_cons 4.960000e-02   p_joint 9.680000e-02

Joint ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
Cons ci ratio: 1.237119e-01	ci left: 4.483567e-02	ci right 5.079668e-02	k: 955	n:20000
KS ci ratio: 3.911929e-02	ci left: 3.276620e-01	ci right 3.407862e-01	k: 6684	n:20000
TNRC6C   20000 perm   5 sec   (3817 perm/sec)   p_kst 3.342000e-01   p_cons 4.775000e-02   p_joint 8.920000e-02

Joint ci ratio: 6.655995e-02	ci left: 1.001734e-01	ci right 1.071035e-01	k: 3108	n:30000
Cons ci ratio: 1.018720e-01	ci left: 4.463242e-02	ci right 4.945578e-02	k: 1410	n:30000
KS ci ratio: 3.160992e-02	ci left: 3.335097e-01	ci right 3.442548e-01	k: 10166	n:30000
TNRC6C   30000 perm   8 sec   (3652 perm/sec)   p_kst 3.388667e-01   p_cons 4.700000e-02   p_joint 1.036000e-01

Joint ci ratio: 6.205856e-02	ci left: 8.787830e-02	ci right 9.353128e-02	k: 3627	n:40000
Cons ci ratio: 8.865348e-02	ci left: 4.453039e-02	ci right 4.868575e-02	k: 1863	n:40000
KS ci ratio: 2.748071e-02	ci left: 3.325167e-01	ci right 3.418069e-01	k: 13486	n:40000
TNRC6C   40000 perm   11 sec   (3546 perm/sec)   p_kst 3.371500e-01   p_cons 4.657500e-02   p_joint 9.067500e-02

Outputting figure to mutsig2_images.part000000000179/TNRC6C.6_5266_40000_0.33715_0.046575_0.090675.png
                gene_name: TNRC6C
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 38 percent done.
TNFAIP8L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 1.230957e-02	ci left: 9.045292e-01	ci right 9.158305e-01	k: 9103	n:10000
TNFAIP8L3   10000 perm   2 sec   (6452 perm/sec)   p_kst 9.103000e-01   p_cons 5.981000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFAIP8L3.5_891_10000_0.9103_0.5981_1.png
                gene_name: TNFAIP8L3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
TMTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
Cons ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
KS ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
TMTC2   10000 perm   2 sec   (5226 perm/sec)   p_kst 2.900000e-01   p_cons 8.133000e-01   p_joint 4.510000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC2.4_2559_10000_0.29_0.8133_0.451.png
                gene_name: TMTC2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 42 percent done.
TNFRSF9
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
KS ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
TNFRSF9   10000 perm   2 sec   (6412 perm/sec)   p_kst 8.556000e-01   p_cons 8.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFRSF9.3_796_10000_0.8556_0.8494_1.png
                gene_name: TNFRSF9
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
TNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
TNK2   10000 perm   2 sec   (4738 perm/sec)   p_kst 3.660000e-01   p_cons 6.310000e-02   p_joint 1.574000e-01

Joint ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 3.636814e-02	ci left: 3.607133e-01	ci right 3.741253e-01	k: 7348	n:20000
TNK2   20000 perm   5 sec   (4185 perm/sec)   p_kst 3.674000e-01   p_cons 6.230000e-02   p_joint 1.108000e-01

Joint ci ratio: 5.374126e-02	ci left: 1.465701e-01	ci right 1.546977e-01	k: 4518	n:30000
Cons ci ratio: 8.895009e-02	ci left: 5.808925e-02	ci right 6.352952e-02	k: 1823	n:30000
KS ci ratio: 2.984726e-02	ci left: 3.595821e-01	ci right 3.705108e-01	k: 10951	n:30000
TNK2   30000 perm   7 sec   (4007 perm/sec)   p_kst 3.650333e-01   p_cons 6.076667e-02   p_joint 1.506000e-01

Outputting figure to mutsig2_images.part000000000179/TNK2.4_3415_30000_0.36503_0.060767_0.1506.png
                gene_name: TNK2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 47 percent done.
TNNI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
Cons ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
KS ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
TNNI2   10000 perm   2 sec   (6081 perm/sec)   p_kst 6.673000e-01   p_cons 5.642000e-01   p_joint 6.850000e-01

Outputting figure to mutsig2_images.part000000000179/TNNI2.4_592_10000_0.6673_0.5642_0.685.png
                gene_name: TNNI2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 49 percent done.
TNNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
Cons ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
TNNT2   10000 perm   2 sec   (5808 perm/sec)   p_kst 7.610000e-02   p_cons 5.705000e-01   p_joint 1.170000e-01

Joint ci ratio: 6.378337e-02	ci left: 1.537595e-01	ci right 1.639399e-01	k: 3176	n:20000
Cons ci ratio: 2.422373e-02	ci left: 5.600486e-01	ci right 5.738320e-01	k: 11339	n:20000
KS ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
TNNT2   20000 perm   4 sec   (5044 perm/sec)   p_kst 7.280000e-02   p_cons 5.669500e-01   p_joint 1.588000e-01

Outputting figure to mutsig2_images.part000000000179/TNNT2.4_979_20000_0.0728_0.56695_0.1588.png
                gene_name: TNNT2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
TNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
Cons ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
TNPO2   10000 perm   2 sec   (5055 perm/sec)   p_kst 4.863000e-01   p_cons 2.149000e-01   p_joint 5.318000e-01

Outputting figure to mutsig2_images.part000000000179/TNPO2.4_2786_10000_0.4863_0.2149_0.5318.png
                gene_name: TNPO2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
TNRC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
TNRC6B   10000 perm   2 sec   (4175 perm/sec)   p_kst 8.035000e-01   p_cons 3.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNRC6B.4_5715_10000_0.8035_0.3084_1.png
                gene_name: TNRC6B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
TMX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 3.114346e-02	ci left: 6.033719e-01	ci right 6.225622e-01	k: 6130	n:10000
TMX3   10000 perm   2 sec   (5945 perm/sec)   p_kst 6.130000e-01   p_cons 9.409000e-01   p_joint 6.707000e-01

Outputting figure to mutsig2_images.part000000000179/TMX3.3_1429_10000_0.613_0.9409_0.6707.png
                gene_name: TMX3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 58 percent done.
TMX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
Cons ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
TMX4   10000 perm   2 sec   (6150 perm/sec)   p_kst 5.910000e-02   p_cons 8.710000e-01   p_joint 2.136000e-01

Joint ci ratio: 6.975976e-02	ci left: 1.315730e-01	ci right 1.411330e-01	k: 2726	n:20000
Cons ci ratio: 1.079609e-02	ci left: 8.635348e-01	ci right 8.729579e-01	k: 17366	n:20000
KS ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
TMX4   20000 perm   4 sec   (5270 perm/sec)   p_kst 5.810000e-02   p_cons 8.683000e-01   p_joint 1.363000e-01

Joint ci ratio: 6.233483e-02	ci left: 1.128244e-01	ci right 1.201167e-01	k: 3493	n:30000
Cons ci ratio: 9.147074e-03	ci left: 8.556174e-01	ci right 8.635129e-01	k: 25788	n:30000
KS ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
TMX4   30000 perm   6 sec   (4962 perm/sec)   p_kst 6.050000e-02   p_cons 8.596000e-01   p_joint 1.164333e-01

Outputting figure to mutsig2_images.part000000000179/TMX4.3_1082_30000_0.0605_0.8596_0.11643.png
                gene_name: TMX4
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 60 percent done.
TNFSF4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
Cons ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
KS ci ratio: 7.090890e-03	ci left: 9.647821e-01	ci right 9.717416e-01	k: 9684	n:10000
TNFSF4   10000 perm   1 sec   (7450 perm/sec)   p_kst 9.684000e-01   p_cons 7.971000e-01   p_joint 9.938000e-01

Outputting figure to mutsig2_images.part000000000179/TNFSF4.2_564_10000_0.9684_0.7971_0.9938.png
                gene_name: TNFSF4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 62 percent done.
TNIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.172831e-02	ci left: 9.123470e-01	ci right 9.232082e-01	k: 9179	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
TNIP3   10000 perm   2 sec   (6254 perm/sec)   p_kst 5.242000e-01   p_cons 9.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNIP3.3_1022_10000_0.5242_0.9179_1.png
                gene_name: TNIP3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TNKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 9.408979e-03	ci left: 9.409733e-01	ci right 9.499650e-01	k: 9456	n:10000
TNKS   10000 perm   2 sec   (4728 perm/sec)   p_kst 9.456000e-01   p_cons 5.389000e-01   p_joint 9.634000e-01

Outputting figure to mutsig2_images.part000000000179/TNKS.3_4092_10000_0.9456_0.5389_0.9634.png
                gene_name: TNKS
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 67 percent done.
TNNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
Cons ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
TNNT3   10000 perm   2 sec   (6277 perm/sec)   p_kst 9.990000e-02   p_cons 3.059000e-01   p_joint 1.736000e-01

Joint ci ratio: 5.917104e-02	ci left: 1.745985e-01	ci right 1.852947e-01	k: 3598	n:20000
Cons ci ratio: 4.215993e-02	ci left: 2.953926e-01	ci right 3.081650e-01	k: 6035	n:20000
KS ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
TNNT3   20000 perm   4 sec   (5373 perm/sec)   p_kst 1.032500e-01   p_cons 3.017500e-01   p_joint 1.799000e-01

Outputting figure to mutsig2_images.part000000000179/TNNT3.3_923_20000_0.10325_0.30175_0.1799.png
                gene_name: TNNT3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 69 percent done.
TNPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KS ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
TNPO1   10000 perm   2 sec   (5347 perm/sec)   p_kst 8.319000e-01   p_cons 5.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNPO1.3_2793_10000_0.8319_0.5338_1.png
                gene_name: TNPO1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TNPO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
TNPO3   10000 perm   2 sec   (5300 perm/sec)   p_kst 2.257000e-01   p_cons 7.454000e-01   p_joint 3.687000e-01

Outputting figure to mutsig2_images.part000000000179/TNPO3.3_2860_10000_0.2257_0.7454_0.3687.png
                gene_name: TNPO3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 73 percent done.
TOB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
Cons ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
TOB2   10000 perm   2 sec   (6191 perm/sec)   p_kst 8.050000e-02   p_cons 9.703000e-01   p_joint 1.837000e-01

Joint ci ratio: 5.509237e-02	ci left: 1.964048e-01	ci right 2.075819e-01	k: 4039	n:20000
Cons ci ratio: 4.890784e-03	ci left: 9.673857e-01	ci right 9.721764e-01	k: 19397	n:20000
KS ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
TOB2   20000 perm   4 sec   (5312 perm/sec)   p_kst 8.270000e-02   p_cons 9.698500e-01   p_joint 2.019500e-01

Outputting figure to mutsig2_images.part000000000179/TOB2.3_1039_20000_0.0827_0.96985_0.20195.png
                gene_name: TOB2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 76 percent done.
TMX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
Cons ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
KS ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
TMX2   10000 perm   1 sec   (7248 perm/sec)   p_kst 6.536000e-01   p_cons 5.393000e-01   p_joint 6.928000e-01

Outputting figure to mutsig2_images.part000000000179/TMX2.2_923_10000_0.6536_0.5393_0.6928.png
                gene_name: TMX2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 78 percent done.
TNFRSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
Cons ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
KS ci ratio: 2.574045e-02	ci left: 6.896003e-01	ci right 7.076838e-01	k: 6987	n:10000
TNFRSF21   10000 perm   2 sec   (6060 perm/sec)   p_kst 6.987000e-01   p_cons 7.178000e-01   p_joint 9.237000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF21.2_1992_10000_0.6987_0.7178_0.9237.png
                gene_name: TNFRSF21
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 80 percent done.
TNFRSF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
Cons ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
KS ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
TNFRSF4   10000 perm   1 sec   (6800 perm/sec)   p_kst 3.021000e-01   p_cons 6.514000e-01   p_joint 6.280000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF4.2_862_10000_0.3021_0.6514_0.628.png
                gene_name: TNFRSF4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 82 percent done.
TNFRSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
Cons ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
KS ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
TNFRSF8   10000 perm   2 sec   (6058 perm/sec)   p_kst 1.402000e-01   p_cons 3.405000e-01   p_joint 3.543000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF8.2_1848_10000_0.1402_0.3405_0.3543.png
                gene_name: TNFRSF8
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 84 percent done.
TNMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
TNMD   10000 perm   2 sec   (6608 perm/sec)   p_kst 1.323000e-01   p_cons 2.290000e-01   p_joint 2.943000e-01

Joint ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
Cons ci ratio: 5.355960e-02	ci left: 2.055606e-01	ci right 2.169235e-01	k: 4224	n:20000
KS ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
TNMD   20000 perm   4 sec   (5632 perm/sec)   p_kst 1.294000e-01   p_cons 2.112000e-01   p_joint 1.213000e-01

Outputting figure to mutsig2_images.part000000000179/TNMD.2_982_20000_0.1294_0.2112_0.1213.png
                gene_name: TNMD
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 87 percent done.
TNNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
KS ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
TNNC2   10000 perm   1 sec   (7169 perm/sec)   p_kst 5.237000e-01   p_cons 3.488000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNNC2.2_507_10000_0.5237_0.3488_1.png
                gene_name: TNNC2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
TNNI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
TNNI1   10000 perm   1 sec   (7257 perm/sec)   p_kst 2.450000e-02   p_cons 6.198000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.165787e-02	ci left: 6.141339e-01	ci right 6.276309e-01	k: 12418	n:20000
KS ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
TNNI1   20000 perm   3 sec   (6163 perm/sec)   p_kst 2.490000e-02   p_cons 6.209000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.760883e-02	ci left: 6.173873e-01	ci right 6.283889e-01	k: 18687	n:30000
KS ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
TNNI1   30000 perm   5 sec   (5731 perm/sec)   p_kst 2.406667e-02   p_cons 6.229000e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.526442e-02	ci left: 6.176780e-01	ci right 6.272042e-01	k: 24898	n:40000
KS ci ratio: 1.217156e-01	ci left: 2.373461e-02	ci right 2.683483e-02	k: 1010	n:40000
TNNI1   40000 perm   7 sec   (5497 perm/sec)   p_kst 2.525000e-02   p_cons 6.224500e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.368059e-02	ci left: 6.172318e-01	ci right 6.257541e-01	k: 31075	n:50000
KS ci ratio: 1.080249e-01	ci left: 2.427217e-02	ci right 2.706327e-02	k: 1282	n:50000
TNNI1   50000 perm   10 sec   (5260 perm/sec)   p_kst 2.564000e-02   p_cons 6.215000e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 1.244181e-02	ci left: 6.193752e-01	ci right 6.271462e-01	k: 37396	n:60000
KS ci ratio: 9.866558e-02	ci left: 2.436717e-02	ci right 2.691233e-02	k: 1537	n:60000
TNNI1   60000 perm   12 sec   (5109 perm/sec)   p_kst 2.561667e-02   p_cons 6.232667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNNI1.2_588_60000_0.025617_0.62327_1.png
                gene_name: TNNI1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TNNI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.129725e-02	ci left: 7.637498e-01	ci right 7.802915e-01	k: 7721	n:10000
Cons ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
KS ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
TNNI3   10000 perm   1 sec   (6736 perm/sec)   p_kst 5.256000e-01   p_cons 3.592000e-01   p_joint 7.721000e-01

Outputting figure to mutsig2_images.part000000000179/TNNI3.2_660_10000_0.5256_0.3592_0.7721.png
                gene_name: TNNI3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 93 percent done.
TNP2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 96 percent done.
TNS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
Cons ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
TNS4   10000 perm   2 sec   (5803 perm/sec)   p_kst 7.169000e-01   p_cons 7.322000e-01   p_joint 7.161000e-01

Outputting figure to mutsig2_images.part000000000179/TNS4.2_2196_10000_0.7169_0.7322_0.7161.png
                gene_name: TNS4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 98 percent done.
TOE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
KS ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
TOE1   10000 perm   2 sec   (6107 perm/sec)   p_kst 2.807000e-01   p_cons 7.223000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000179/TOE1.2_1565_10000_0.2807_0.7223_0.5107.png
                gene_name: TOE1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000179
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 179 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 4422636: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000180> was used as the working directory.
Started at Wed Oct 24 18:09:44 2012
Results reported at Wed Oct 24 21:22:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000180.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000180.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 180  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000180.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11617.20 sec.
    Max Memory :      5238 MB
    Max Swap   :      7782 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
180
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 180
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 180: processing genes 16195 - 16285
Calculating significance of each gene.
Using projection method.
16195	TOLLIP	7.812123e-01
16196	TOM1	3.594454e-01
16197	TOM1L1	1.529101e-01
16198	TOM1L2	8.928660e-01
16199	TOMM20	1
16200	TOMM20L	4.476176e-01
16201	TOMM22	1
16202	TOMM34	8.204511e-01
16203	TOMM40	1
16204	TOMM40L	1
16205	TOMM5	1
16206	TOMM7	1
16207	TOMM70A	6.822891e-01
16208	TOP1	3.891457e-01
16209	TOP1MT	9.486772e-01
16210	TOP2A	8.882558e-01
16211	TOP2B	9.023105e-01
16212	TOP3A	5.995334e-01
16213	TOP3B	1
16214	TOPBP1	1
16215	TOPORS	6.535687e-01
16216	TOR1A	6.790540e-01
16217	TOR1AIP1	9.488273e-01
16218	TOR1AIP2	3.443210e-01
16219	TOR1B	7.504551e-01
16220	TOR2A	1
16221	TOR3A	2.267323e-01
16222	TOX	5.469094e-01
16223	TOX2	4.178591e-01
16224	TOX3	8.783259e-01
16225	TOX4	9.378530e-01
In gene TP53 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 1258    n = 1	mu =   4.02e-07
    LUAD-44-2666-TP	categ 6	N = 1258    n = 1	mu =   3.35e-07
    LUAD-50-5946-TP	categ 6	N = 1258    n = 1	mu =   7.03e-07
16226	TP53	0
16227	TP53AIP1	1
16228	TP53BP1	9.945798e-01
16229	TP53BP2	1
16230	TP53I11	1
16231	TP53I13	1
16232	TP53I3	1
16233	TP53INP1	6.312914e-01
16234	TP53INP2	1
16235	TP53RK	6.764992e-01
16236	TP53TG5	6.626979e-01
16237	TP63	9.289511e-01
16238	TP73	3.489700e-01
16239	TPBG	9.055738e-01
16240	TPCN1	9.811214e-01
16241	TPCN2	9.610347e-01
In gene TPD52 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 799     n = 1	mu =   7.03e-07
16242	TPD52	3.056698e-01
16243	TPD52L1	1
16244	TPD52L2	1
16245	TPD52L3	1
16246	TPH1	1.006743e-02
16247	TPH2	4.636060e-01
16248	TPI1	4.346165e-02
16249	TPK1	1.481999e-02
16250	TPM1	8.517680e-01
16251	TPM2	6.255856e-01
16252	TPM3	7.097456e-01
16253	TPM4	7.728379e-01
16254	TPMT	3.420742e-01
16255	TPO	8.692501e-01
16256	TPP1	2.891327e-01
16257	TPP2	9.967578e-01
16258	TPPP	5.527390e-01
16259	TPPP2	5.339712e-01
16260	TPPP3	7.228464e-01
In gene TPR the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 7296    n = 1	mu =   6.02e-07
16261	TPR	9.990760e-01
16262	TPRA1	1
16263	TPRG1	3.302475e-01
16264	TPRG1L	5.463874e-01
16265	TPRKB	1
16266	TPRN	1
16267	TPRX1	6.236762e-01
16268	TPSAB1	2.022413e-01
16269	TPSB2	3.067277e-01
16270	TPSD1	1
16271	TPSG1	1
16272	TPST1	1
16273	TPST2	5.224683e-01
16274	TPT1	1
16275	TPTE	2.054216e-02
16276	TPTE2	3.586092e-01
16277	TPX2	7.351288e-01
16278	TRA2A	7.406920e-01
16279	TRA2B	8.891222e-01
16280	TRABD	7.939564e-01
16281	TRADD	1
16282	TRAF1	1
16283	TRAF2	9.405167e-01
16284	TRAF3	6.522371e-01
16285	TRAF3IP1	6.343663e-01
Done

Running MutSig 2:
Scatter job 180: processing genes 16195 - 16285
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
TP53   10000 perm   5 sec   (2198 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
TP53   20000 perm   11 sec   (1782 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
TP53   30000 perm   16 sec   (1867 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
TP53   40000 perm   21 sec   (1900 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
TP53   50000 perm   26 sec   (1921 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
TP53   60000 perm   31 sec   (1930 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
TP53   70000 perm   36 sec   (1931 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
TP53   80000 perm   42 sec   (1927 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
TP53   90000 perm   47 sec   (1924 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
TP53   100000 perm   52 sec   (1919 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
TP53   110000 perm   58 sec   (1912 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
TP53   120000 perm   63 sec   (1904 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
TP53   130000 perm   69 sec   (1895 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
TP53   140000 perm   74 sec   (1886 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
TP53   150000 perm   80 sec   (1876 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
TP53   160000 perm   86 sec   (1867 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
TP53   170000 perm   92 sec   (1857 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
TP53   180000 perm   97 sec   (1848 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
TP53   190000 perm   103 sec   (1837 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
TP53   200000 perm   109 sec   (1829 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
TP53   210000 perm   115 sec   (1819 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
TP53   220000 perm   122 sec   (1809 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
TP53   230000 perm   128 sec   (1799 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
TP53   240000 perm   134 sec   (1790 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
TP53   250000 perm   140 sec   (1780 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
TP53   260000 perm   147 sec   (1770 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
TP53   270000 perm   153 sec   (1761 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
TP53   280000 perm   160 sec   (1752 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
TP53   290000 perm   166 sec   (1742 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
TP53   300000 perm   173 sec   (1733 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
TP53   310000 perm   180 sec   (1723 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
TP53   320000 perm   187 sec   (1714 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
TP53   330000 perm   194 sec   (1705 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
TP53   340000 perm   200 sec   (1696 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
TP53   350000 perm   207 sec   (1687 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
TP53   360000 perm   215 sec   (1678 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
TP53   370000 perm   222 sec   (1668 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
TP53   380000 perm   229 sec   (1660 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
TP53   390000 perm   236 sec   (1651 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
TP53   400000 perm   244 sec   (1642 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
TP53   410000 perm   251 sec   (1633 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
TP53   420000 perm   259 sec   (1624 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
TP53   430000 perm   266 sec   (1615 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
TP53   440000 perm   274 sec   (1606 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
TP53   450000 perm   282 sec   (1598 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
TP53   460000 perm   289 sec   (1589 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
TP53   470000 perm   297 sec   (1581 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
TP53   480000 perm   305 sec   (1573 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
TP53   490000 perm   313 sec   (1565 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
TP53   500000 perm   321 sec   (1557 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
TP53   510000 perm   329 sec   (1550 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
TP53   520000 perm   337 sec   (1542 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
TP53   530000 perm   345 sec   (1534 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
TP53   540000 perm   354 sec   (1526 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
TP53   550000 perm   362 sec   (1518 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
TP53   560000 perm   371 sec   (1510 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
TP53   570000 perm   379 sec   (1503 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
TP53   580000 perm   388 sec   (1495 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
TP53   590000 perm   397 sec   (1488 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
TP53   600000 perm   405 sec   (1480 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
TP53   610000 perm   414 sec   (1472 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
TP53   620000 perm   423 sec   (1465 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
TP53   630000 perm   432 sec   (1458 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
TP53   640000 perm   441 sec   (1451 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
TP53   650000 perm   450 sec   (1443 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
TP53   660000 perm   459 sec   (1436 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
TP53   670000 perm   469 sec   (1430 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
TP53   680000 perm   478 sec   (1423 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
TP53   690000 perm   487 sec   (1416 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
TP53   700000 perm   497 sec   (1409 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
TP53   710000 perm   506 sec   (1403 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
TP53   720000 perm   516 sec   (1396 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
TP53   730000 perm   525 sec   (1390 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
TP53   740000 perm   535 sec   (1383 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
TP53   750000 perm   545 sec   (1376 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
TP53   760000 perm   555 sec   (1370 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
TP53   770000 perm   565 sec   (1364 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
TP53   780000 perm   574 sec   (1358 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
TP53   790000 perm   584 sec   (1352 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
TP53   800000 perm   595 sec   (1345 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
TP53   810000 perm   605 sec   (1339 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
TP53   820000 perm   615 sec   (1333 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
TP53   830000 perm   626 sec   (1327 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
TP53   840000 perm   636 sec   (1321 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
TP53   850000 perm   646 sec   (1315 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
TP53   860000 perm   657 sec   (1309 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
TP53   870000 perm   667 sec   (1304 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
TP53   880000 perm   678 sec   (1298 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
TP53   890000 perm   689 sec   (1292 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
TP53   900000 perm   700 sec   (1286 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
TP53   910000 perm   711 sec   (1280 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
TP53   920000 perm   722 sec   (1275 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
TP53   930000 perm   733 sec   (1269 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
TP53   940000 perm   744 sec   (1264 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
TP53   950000 perm   755 sec   (1259 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
TP53   960000 perm   766 sec   (1253 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
TP53   970000 perm   777 sec   (1248 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
TP53   980000 perm   788 sec   (1243 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
TP53   990000 perm   800 sec   (1238 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
TP53   1000000 perm   811 sec   (1233 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
TP53   1010000 perm   823 sec   (1228 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
TP53   1020000 perm   834 sec   (1223 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
TP53   1030000 perm   846 sec   (1218 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
TP53   1040000 perm   857 sec   (1213 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
TP53   1050000 perm   869 sec   (1208 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
TP53   1060000 perm   881 sec   (1203 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
TP53   1070000 perm   893 sec   (1198 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
TP53   1080000 perm   905 sec   (1193 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
TP53   1090000 perm   918 sec   (1188 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
TP53   1100000 perm   930 sec   (1183 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
TP53   1110000 perm   942 sec   (1178 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
TP53   1120000 perm   955 sec   (1173 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
TP53   1130000 perm   967 sec   (1168 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
TP53   1140000 perm   980 sec   (1163 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
TP53   1150000 perm   992 sec   (1159 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
TP53   1160000 perm   1005 sec   (1154 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
TP53   1170000 perm   1018 sec   (1149 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
TP53   1180000 perm   1031 sec   (1145 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
TP53   1190000 perm   1043 sec   (1140 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
TP53   1200000 perm   1056 sec   (1136 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
TP53   1210000 perm   1069 sec   (1131 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
TP53   1220000 perm   1082 sec   (1127 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
TP53   1230000 perm   1096 sec   (1123 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
TP53   1240000 perm   1109 sec   (1118 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
TP53   1250000 perm   1122 sec   (1114 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
TP53   1260000 perm   1136 sec   (1110 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
TP53   1270000 perm   1149 sec   (1105 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
TP53   1280000 perm   1162 sec   (1101 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
TP53   1290000 perm   1176 sec   (1097 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
TP53   1300000 perm   1190 sec   (1093 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
TP53   1310000 perm   1203 sec   (1089 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
TP53   1320000 perm   1217 sec   (1084 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
TP53   1330000 perm   1231 sec   (1080 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
TP53   1340000 perm   1245 sec   (1076 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
TP53   1350000 perm   1259 sec   (1072 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
TP53   1360000 perm   1273 sec   (1068 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
TP53   1370000 perm   1287 sec   (1064 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
TP53   1380000 perm   1302 sec   (1060 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
TP53   1390000 perm   1316 sec   (1056 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
TP53   1400000 perm   1330 sec   (1053 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
TP53   1410000 perm   1344 sec   (1049 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
TP53   1420000 perm   1359 sec   (1045 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
TP53   1430000 perm   1374 sec   (1041 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
TP53   1440000 perm   1388 sec   (1037 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
TP53   1450000 perm   1403 sec   (1034 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
TP53   1460000 perm   1417 sec   (1030 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
TP53   1470000 perm   1432 sec   (1026 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
TP53   1480000 perm   1447 sec   (1023 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
TP53   1490000 perm   1462 sec   (1019 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
TP53   1500000 perm   1477 sec   (1016 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
TP53   1510000 perm   1492 sec   (1012 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
TP53   1520000 perm   1507 sec   (1009 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
TP53   1530000 perm   1522 sec   (1005 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
TP53   1540000 perm   1538 sec   (1001 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
TP53   1550000 perm   1553 sec   (998 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
TP53   1560000 perm   1569 sec   (994 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
TP53   1570000 perm   1584 sec   (991 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
TP53   1580000 perm   1599 sec   (988 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
TP53   1590000 perm   1615 sec   (985 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
TP53   1600000 perm   1630 sec   (981 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
TP53   1610000 perm   1646 sec   (978 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
TP53   1620000 perm   1662 sec   (975 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
TP53   1630000 perm   1678 sec   (972 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
TP53   1640000 perm   1693 sec   (969 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
TP53   1650000 perm   1709 sec   (965 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
TP53   1660000 perm   1725 sec   (962 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
TP53   1670000 perm   1741 sec   (959 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
TP53   1680000 perm   1757 sec   (956 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
TP53   1690000 perm   1774 sec   (953 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
TP53   1700000 perm   1790 sec   (950 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
TP53   1710000 perm   1806 sec   (947 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
TP53   1720000 perm   1823 sec   (944 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
TP53   1730000 perm   1839 sec   (941 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
TP53   1740000 perm   1856 sec   (938 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
TP53   1750000 perm   1873 sec   (935 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
TP53   1760000 perm   1890 sec   (931 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
TP53   1770000 perm   1906 sec   (928 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
TP53   1780000 perm   1924 sec   (925 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
TP53   1790000 perm   1940 sec   (922 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
TP53   1800000 perm   1957 sec   (920 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
TP53   1810000 perm   1974 sec   (917 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
TP53   1820000 perm   1991 sec   (914 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
TP53   1830000 perm   2009 sec   (911 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
TP53   1840000 perm   2026 sec   (908 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
TP53   1850000 perm   2043 sec   (905 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
TP53   1860000 perm   2061 sec   (902 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
TP53   1870000 perm   2079 sec   (900 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
TP53   1880000 perm   2096 sec   (897 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
TP53   1890000 perm   2114 sec   (894 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
TP53   1900000 perm   2132 sec   (891 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
TP53   1910000 perm   2149 sec   (889 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
TP53   1920000 perm   2167 sec   (886 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
TP53   1930000 perm   2185 sec   (883 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
TP53   1940000 perm   2202 sec   (881 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
TP53   1950000 perm   2220 sec   (878 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
TP53   1960000 perm   2238 sec   (876 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
TP53   1970000 perm   2256 sec   (873 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
TP53   1980000 perm   2274 sec   (871 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
TP53   1990000 perm   2292 sec   (868 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
TP53   2000000 perm   2311 sec   (866 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
TP53   2010000 perm   2329 sec   (863 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
TP53   2020000 perm   2347 sec   (861 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
TP53   2030000 perm   2366 sec   (858 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
TP53   2040000 perm   2384 sec   (856 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
TP53   2050000 perm   2403 sec   (853 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
TP53   2060000 perm   2422 sec   (851 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
TP53   2070000 perm   2441 sec   (848 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
TP53   2080000 perm   2460 sec   (846 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
TP53   2090000 perm   2479 sec   (843 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
TP53   2100000 perm   2498 sec   (841 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
TP53   2110000 perm   2517 sec   (838 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
TP53   2120000 perm   2536 sec   (836 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
TP53   2130000 perm   2555 sec   (834 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
TP53   2140000 perm   2574 sec   (831 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
TP53   2150000 perm   2593 sec   (829 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
TP53   2160000 perm   2613 sec   (827 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
TP53   2170000 perm   2632 sec   (824 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
TP53   2180000 perm   2652 sec   (822 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
TP53   2190000 perm   2671 sec   (820 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
TP53   2200000 perm   2691 sec   (818 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
TP53   2210000 perm   2711 sec   (815 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
TP53   2220000 perm   2731 sec   (813 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
TP53   2230000 perm   2751 sec   (811 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
TP53   2240000 perm   2771 sec   (808 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
TP53   2250000 perm   2792 sec   (806 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
TP53   2260000 perm   2812 sec   (804 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
TP53   2270000 perm   2833 sec   (801 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
TP53   2280000 perm   2853 sec   (799 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
TP53   2290000 perm   2873 sec   (797 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
TP53   2300000 perm   2894 sec   (795 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
TP53   2310000 perm   2914 sec   (793 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
TP53   2320000 perm   2935 sec   (790 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
TP53   2330000 perm   2956 sec   (788 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
TP53   2340000 perm   2976 sec   (786 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
TP53   2350000 perm   2997 sec   (784 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
TP53   2360000 perm   3018 sec   (782 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
TP53   2370000 perm   3039 sec   (780 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
TP53   2380000 perm   3060 sec   (778 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
TP53   2390000 perm   3081 sec   (776 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
TP53   2400000 perm   3103 sec   (774 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
TP53   2410000 perm   3124 sec   (771 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
TP53   2420000 perm   3146 sec   (769 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
TP53   2430000 perm   3168 sec   (767 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
TP53   2440000 perm   3190 sec   (765 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
TP53   2450000 perm   3211 sec   (763 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
TP53   2460000 perm   3233 sec   (761 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
TP53   2470000 perm   3255 sec   (759 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
TP53   2480000 perm   3276 sec   (757 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
TP53   2490000 perm   3299 sec   (755 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
TP53   2500000 perm   3321 sec   (753 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
TP53   2510000 perm   3342 sec   (751 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
TP53   2520000 perm   3364 sec   (749 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
TP53   2530000 perm   3386 sec   (747 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
TP53   2540000 perm   3408 sec   (745 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
TP53   2550000 perm   3431 sec   (743 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
TP53   2560000 perm   3453 sec   (741 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
TP53   2570000 perm   3475 sec   (740 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
TP53   2580000 perm   3497 sec   (738 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
TP53   2590000 perm   3520 sec   (736 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
TP53   2600000 perm   3542 sec   (734 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
TP53   2610000 perm   3564 sec   (732 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
TP53   2620000 perm   3587 sec   (730 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
TP53   2630000 perm   3610 sec   (729 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
TP53   2640000 perm   3632 sec   (727 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
TP53   2650000 perm   3655 sec   (725 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
TP53   2660000 perm   3678 sec   (723 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
TP53   2670000 perm   3701 sec   (722 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
TP53   2680000 perm   3724 sec   (720 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
TP53   2690000 perm   3747 sec   (718 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
TP53   2700000 perm   3770 sec   (716 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
TP53   2710000 perm   3793 sec   (714 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
TP53   2720000 perm   3817 sec   (713 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
TP53   2730000 perm   3840 sec   (711 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
TP53   2740000 perm   3864 sec   (709 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
TP53   2750000 perm   3887 sec   (707 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
TP53   2760000 perm   3911 sec   (706 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
TP53   2770000 perm   3935 sec   (704 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
TP53   2780000 perm   3959 sec   (702 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
TP53   2790000 perm   3983 sec   (701 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
TP53   2800000 perm   4007 sec   (699 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
TP53   2810000 perm   4031 sec   (697 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
TP53   2820000 perm   4055 sec   (695 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
TP53   2830000 perm   4079 sec   (694 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
TP53   2840000 perm   4103 sec   (692 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
TP53   2850000 perm   4128 sec   (690 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
TP53   2860000 perm   4152 sec   (689 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
TP53   2870000 perm   4176 sec   (687 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
TP53   2880000 perm   4200 sec   (686 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
TP53   2890000 perm   4225 sec   (684 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
TP53   2900000 perm   4250 sec   (682 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
TP53   2910000 perm   4274 sec   (681 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
TP53   2920000 perm   4299 sec   (679 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
TP53   2930000 perm   4324 sec   (678 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
TP53   2940000 perm   4349 sec   (676 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
TP53   2950000 perm   4373 sec   (675 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
TP53   2960000 perm   4398 sec   (673 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
TP53   2970000 perm   4423 sec   (671 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
TP53   2980000 perm   4449 sec   (670 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
TP53   2990000 perm   4474 sec   (668 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
TP53   3000000 perm   4500 sec   (667 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
TP53   3010000 perm   4525 sec   (665 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
TP53   3020000 perm   4550 sec   (664 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
TP53   3030000 perm   4576 sec   (662 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
TP53   3040000 perm   4601 sec   (661 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
TP53   3050000 perm   4627 sec   (659 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
TP53   3060000 perm   4653 sec   (658 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
TP53   3070000 perm   4679 sec   (656 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
TP53   3080000 perm   4704 sec   (655 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
TP53   3090000 perm   4730 sec   (653 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
TP53   3100000 perm   4757 sec   (652 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
TP53   3110000 perm   4783 sec   (650 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
TP53   3120000 perm   4809 sec   (649 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
TP53   3130000 perm   4835 sec   (647 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
TP53   3140000 perm   4862 sec   (646 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
TP53   3150000 perm   4888 sec   (644 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
TP53   3160000 perm   4915 sec   (643 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
TP53   3170000 perm   4942 sec   (641 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
TP53   3180000 perm   4968 sec   (640 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
TP53   3190000 perm   4995 sec   (639 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
TP53   3200000 perm   5022 sec   (637 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
TP53   3210000 perm   5049 sec   (636 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
TP53   3220000 perm   5075 sec   (634 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
TP53   3230000 perm   5102 sec   (633 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
TP53   3240000 perm   5129 sec   (632 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
TP53   3250000 perm   5157 sec   (630 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
TP53   3260000 perm   5183 sec   (629 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
TP53   3270000 perm   5211 sec   (628 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
TP53   3280000 perm   5239 sec   (626 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
TP53   3290000 perm   5266 sec   (625 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
TP53   3300000 perm   5293 sec   (623 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
TP53   3310000 perm   5320 sec   (622 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
TP53   3320000 perm   5348 sec   (621 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
TP53   3330000 perm   5375 sec   (620 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
TP53   3340000 perm   5403 sec   (618 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
TP53   3350000 perm   5430 sec   (617 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
TP53   3360000 perm   5457 sec   (616 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
TP53   3370000 perm   5484 sec   (614 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
TP53   3380000 perm   5512 sec   (613 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
TP53   3390000 perm   5540 sec   (612 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
TP53   3400000 perm   5568 sec   (611 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
TP53   3410000 perm   5595 sec   (609 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
TP53   3420000 perm   5624 sec   (608 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
TP53   3430000 perm   5653 sec   (607 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
TP53   3440000 perm   5681 sec   (606 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
TP53   3450000 perm   5710 sec   (604 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
TP53   3460000 perm   5738 sec   (603 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
TP53   3470000 perm   5766 sec   (602 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
TP53   3480000 perm   5795 sec   (601 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
TP53   3490000 perm   5823 sec   (599 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
TP53   3500000 perm   5852 sec   (598 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
TP53   3510000 perm   5881 sec   (597 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
TP53   3520000 perm   5910 sec   (596 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
TP53   3530000 perm   5939 sec   (594 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
TP53   3540000 perm   5968 sec   (593 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
TP53   3550000 perm   5998 sec   (592 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
TP53   3560000 perm   6027 sec   (591 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
TP53   3570000 perm   6056 sec   (590 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
TP53   3580000 perm   6085 sec   (588 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
TP53   3590000 perm   6115 sec   (587 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
TP53   3600000 perm   6144 sec   (586 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
TP53   3610000 perm   6173 sec   (585 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
TP53   3620000 perm   6203 sec   (584 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
TP53   3630000 perm   6232 sec   (582 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
TP53   3640000 perm   6262 sec   (581 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
TP53   3650000 perm   6292 sec   (580 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
TP53   3660000 perm   6322 sec   (579 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
TP53   3670000 perm   6351 sec   (578 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
TP53   3680000 perm   6381 sec   (577 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
TP53   3690000 perm   6412 sec   (576 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
TP53   3700000 perm   6442 sec   (574 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
TP53   3710000 perm   6472 sec   (573 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
TP53   3720000 perm   6502 sec   (572 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
TP53   3730000 perm   6532 sec   (571 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
TP53   3740000 perm   6563 sec   (570 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
TP53   3750000 perm   6593 sec   (569 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
TP53   3760000 perm   6623 sec   (568 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
TP53   3770000 perm   6654 sec   (567 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
TP53   3780000 perm   6685 sec   (565 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
TP53   3790000 perm   6715 sec   (564 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
TP53   3800000 perm   6746 sec   (563 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
TP53   3810000 perm   6776 sec   (562 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
TP53   3820000 perm   6807 sec   (561 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
TP53   3830000 perm   6838 sec   (560 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
TP53   3840000 perm   6870 sec   (559 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
TP53   3850000 perm   6901 sec   (558 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
TP53   3860000 perm   6933 sec   (557 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
TP53   3870000 perm   6964 sec   (556 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
TP53   3880000 perm   6995 sec   (555 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
TP53   3890000 perm   7026 sec   (554 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
TP53   3900000 perm   7058 sec   (553 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
TP53   3910000 perm   7089 sec   (552 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
TP53   3920000 perm   7121 sec   (550 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
TP53   3930000 perm   7153 sec   (549 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
TP53   3940000 perm   7184 sec   (548 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
TP53   3950000 perm   7215 sec   (547 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
TP53   3960000 perm   7247 sec   (546 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
TP53   3970000 perm   7279 sec   (545 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
TP53   3980000 perm   7311 sec   (544 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
TP53   3990000 perm   7343 sec   (543 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
TP53   4000000 perm   7375 sec   (542 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
TP53   4010000 perm   7407 sec   (541 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
TP53   4020000 perm   7439 sec   (540 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
TP53   4030000 perm   7471 sec   (539 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
TP53   4040000 perm   7504 sec   (538 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
TP53   4050000 perm   7536 sec   (537 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
TP53   4060000 perm   7569 sec   (536 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
TP53   4070000 perm   7602 sec   (535 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
TP53   4080000 perm   7634 sec   (534 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
TP53   4090000 perm   7667 sec   (533 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
TP53   4100000 perm   7700 sec   (532 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
TP53   4110000 perm   7733 sec   (531 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
TP53   4120000 perm   7766 sec   (531 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
TP53   4130000 perm   7799 sec   (530 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
TP53   4140000 perm   7833 sec   (529 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
TP53   4150000 perm   7866 sec   (528 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
TP53   4160000 perm   7900 sec   (527 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
TP53   4170000 perm   7934 sec   (526 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
TP53   4180000 perm   7967 sec   (525 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
TP53   4190000 perm   8001 sec   (524 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
TP53   4200000 perm   8034 sec   (523 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
TP53   4210000 perm   8068 sec   (522 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
TP53   4220000 perm   8102 sec   (521 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
TP53   4230000 perm   8136 sec   (520 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
TP53   4240000 perm   8170 sec   (519 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
TP53   4250000 perm   8204 sec   (518 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
TP53   4260000 perm   8238 sec   (517 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
TP53   4270000 perm   8272 sec   (516 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
TP53   4280000 perm   8306 sec   (515 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
TP53   4290000 perm   8340 sec   (514 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
TP53   4300000 perm   8375 sec   (513 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
TP53   4310000 perm   8410 sec   (513 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
TP53   4320000 perm   8444 sec   (512 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
TP53   4330000 perm   8479 sec   (511 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
TP53   4340000 perm   8513 sec   (510 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
TP53   4350000 perm   8549 sec   (509 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
TP53   4360000 perm   8584 sec   (508 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
TP53   4370000 perm   8619 sec   (507 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
TP53   4380000 perm   8654 sec   (506 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
TP53   4390000 perm   8689 sec   (505 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
TP53   4400000 perm   8724 sec   (504 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
TP53   4410000 perm   8759 sec   (503 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
TP53   4420000 perm   8794 sec   (503 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
TP53   4430000 perm   8830 sec   (502 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
TP53   4440000 perm   8866 sec   (501 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
TP53   4450000 perm   8901 sec   (500 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
TP53   4460000 perm   8937 sec   (499 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
TP53   4470000 perm   8972 sec   (498 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
TP53   4480000 perm   9008 sec   (497 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
TP53   4490000 perm   9043 sec   (496 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
TP53   4500000 perm   9079 sec   (496 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
TP53   4510000 perm   9115 sec   (495 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
TP53   4520000 perm   9151 sec   (494 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
TP53   4530000 perm   9188 sec   (493 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
TP53   4540000 perm   9225 sec   (492 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
TP53   4550000 perm   9261 sec   (491 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
TP53   4560000 perm   9297 sec   (490 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
TP53   4570000 perm   9334 sec   (490 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
TP53   4580000 perm   9370 sec   (489 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
TP53   4590000 perm   9406 sec   (488 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
TP53   4600000 perm   9442 sec   (487 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
TP53   4610000 perm   9478 sec   (486 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
TP53   4620000 perm   9515 sec   (486 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
TP53   4630000 perm   9551 sec   (485 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
TP53   4640000 perm   9589 sec   (484 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
TP53   4650000 perm   9625 sec   (483 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
TP53   4660000 perm   9661 sec   (482 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
TP53   4670000 perm   9698 sec   (482 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
TP53   4680000 perm   9735 sec   (481 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
TP53   4690000 perm   9773 sec   (480 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
TP53   4700000 perm   9810 sec   (479 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
TP53   4710000 perm   9847 sec   (478 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
TP53   4720000 perm   9884 sec   (478 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
TP53   4730000 perm   9921 sec   (477 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
TP53   4740000 perm   9958 sec   (476 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
TP53   4750000 perm   9995 sec   (475 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
TP53   4760000 perm   10033 sec   (474 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
TP53   4770000 perm   10070 sec   (474 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
TP53   4780000 perm   10108 sec   (473 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
TP53   4790000 perm   10145 sec   (472 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
TP53   4800000 perm   10183 sec   (471 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
TP53   4810000 perm   10221 sec   (471 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
TP53   4820000 perm   10259 sec   (470 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
TP53   4830000 perm   10297 sec   (469 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
TP53   4840000 perm   10334 sec   (468 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
TP53   4850000 perm   10373 sec   (468 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
TP53   4860000 perm   10410 sec   (467 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
TP53   4870000 perm   10449 sec   (466 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
TP53   4880000 perm   10486 sec   (465 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
TP53   4890000 perm   10525 sec   (465 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
TP53   4900000 perm   10569 sec   (464 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
TP53   4910000 perm   10613 sec   (463 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
TP53   4920000 perm   10657 sec   (462 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
TP53   4930000 perm   10702 sec   (461 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
TP53   4940000 perm   10746 sec   (460 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
TP53   4950000 perm   10790 sec   (459 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
TP53   4960000 perm   10835 sec   (458 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
TP53   4970000 perm   10879 sec   (457 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
TP53   4980000 perm   10924 sec   (456 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
TP53   4990000 perm   10967 sec   (455 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
TP53   5000000 perm   11006 sec   (454 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000180/TP53.126_1311_5000000_2e-07_2e-07_0.png
                gene_name: TP53
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
TPTE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
KS ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
TPTE   10000 perm   2 sec   (4112 perm/sec)   p_kst 1.129000e-01   p_cons 5.550000e-02   p_joint 5.890000e-02

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
KS ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
TPTE   20000 perm   5 sec   (3813 perm/sec)   p_kst 1.185000e-01   p_cons 5.630000e-02   p_joint 7.885000e-02

Joint ci ratio: 9.569744e-02	ci left: 5.042643e-02	ci right 5.552724e-02	k: 1588	n:30000
Cons ci ratio: 9.112414e-02	ci left: 5.544646e-02	ci right 6.077285e-02	k: 1742	n:30000
KS ci ratio: 6.158907e-02	ci left: 1.152906e-01	ci right 1.226500e-01	k: 3568	n:30000
TPTE   30000 perm   8 sec   (3682 perm/sec)   p_kst 1.189333e-01   p_cons 5.806667e-02   p_joint 5.293333e-02

Outputting figure to mutsig2_images.part000000000180/TPTE.24_1740_30000_0.11893_0.058067_0.052933.png
                gene_name: TPTE
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.056 

Current progress: 4 percent done.
TPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
Cons ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
KS ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
TPO   10000 perm   2 sec   (4437 perm/sec)   p_kst 1.603000e-01   p_cons 1.266000e-01   p_joint 1.873000e-01

Joint ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
Cons ci ratio: 7.318470e-02	ci left: 1.208400e-01	ci right 1.300692e-01	k: 2508	n:20000
KS ci ratio: 6.372376e-02	ci left: 1.540063e-01	ci right 1.641931e-01	k: 3181	n:20000
TPO   20000 perm   5 sec   (4085 perm/sec)   p_kst 1.590500e-01   p_cons 1.254000e-01   p_joint 1.613500e-01

Outputting figure to mutsig2_images.part000000000180/TPO.16_2866_20000_0.15905_0.1254_0.16135.png
                gene_name: TPO
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 6 percent done.
TPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.933545e-02	ci left: 4.883520e-01	ci right 5.080491e-01	k: 4982	n:10000
Cons ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
KS ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
TPR   10000 perm   3 sec   (3586 perm/sec)   p_kst 7.945000e-01   p_cons 1.544000e-01   p_joint 4.982000e-01

Outputting figure to mutsig2_images.part000000000180/TPR.13_7296_10000_0.7945_0.1544_0.4982.png
                gene_name: TPR
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 9 percent done.
TPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
Cons ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
KS ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
TPH1   10000 perm   2 sec   (4848 perm/sec)   p_kst 6.714000e-01   p_cons 3.247000e-01   p_joint 5.169000e-01

Outputting figure to mutsig2_images.part000000000180/TPH1.11_1375_10000_0.6714_0.3247_0.5169.png
                gene_name: TPH1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 11 percent done.
TPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
TPH2   10000 perm   2 sec   (5476 perm/sec)   p_kst 7.642000e-01   p_cons 7.622000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPH2.8_1517_10000_0.7642_0.7622_1.png
                gene_name: TPH2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
TOP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
KS ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
TOP2A   10000 perm   2 sec   (4704 perm/sec)   p_kst 5.480000e-02   p_cons 1.060000e-02   p_joint 8.100000e-03

Joint ci ratio: 2.114054e-01	ci left: 1.511171e-02	ci right 1.873069e-02	k: 337	n:20000
Cons ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
KS ci ratio: 1.154500e-01	ci left: 5.134529e-02	ci right 5.768501e-02	k: 1089	n:20000
TOP2A   20000 perm   4 sec   (4588 perm/sec)   p_kst 5.445000e-02   p_cons 1.085000e-02   p_joint 1.685000e-02

Joint ci ratio: 1.772951e-01	ci left: 1.461049e-02	ci right 1.748434e-02	k: 480	n:30000
Cons ci ratio: 2.126491e-01	ci left: 1.000844e-02	ci right 1.242095e-02	k: 335	n:30000
KS ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
TOP2A   30000 perm   7 sec   (4481 perm/sec)   p_kst 5.336667e-02   p_cons 1.116667e-02   p_joint 1.600000e-02

Joint ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
Cons ci ratio: 1.875776e-01	ci left: 9.786385e-03	ci right 1.183556e-02	k: 431	n:40000
KS ci ratio: 8.217600e-02	ci left: 5.160889e-02	ci right 5.605616e-02	k: 2152	n:40000
TOP2A   40000 perm   9 sec   (4414 perm/sec)   p_kst 5.380000e-02   p_cons 1.077500e-02   p_joint 1.512500e-02

Joint ci ratio: 1.337870e-01	ci left: 1.574962e-02	ci right 1.802697e-02	k: 843	n:50000
Cons ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
KS ci ratio: 7.334592e-02	ci left: 5.205449e-02	ci right 5.603748e-02	k: 2701	n:50000
TOP2A   50000 perm   11 sec   (4352 perm/sec)   p_kst 5.402000e-02   p_cons 1.172000e-02   p_joint 1.686000e-02

Joint ci ratio: 1.496925e-01	ci left: 1.045357e-02	ci right 1.216086e-02	k: 677	n:60000
Cons ci ratio: 1.469757e-01	ci left: 1.085493e-02	ci right 1.259278e-02	k: 702	n:60000
KS ci ratio: 6.741162e-02	ci left: 5.154872e-02	ci right 5.516131e-02	k: 3200	n:60000
TOP2A   60000 perm   14 sec   (4288 perm/sec)   p_kst 5.333333e-02   p_cons 1.170000e-02   p_joint 1.128333e-02

Joint ci ratio: 1.257789e-01	ci left: 1.282426e-02	ci right 1.455926e-02	k: 957	n:70000
Cons ci ratio: 1.360033e-01	ci left: 1.093036e-02	ci right 1.253907e-02	k: 820	n:70000
KS ci ratio: 6.231860e-02	ci left: 5.183031e-02	ci right 5.517825e-02	k: 3744	n:70000
TOP2A   70000 perm   17 sec   (4223 perm/sec)   p_kst 5.348571e-02   p_cons 1.171429e-02   p_joint 1.367143e-02

Joint ci ratio: 1.165201e-01	ci left: 1.313655e-02	ci right 1.477397e-02	k: 1115	n:80000
Cons ci ratio: 1.273079e-01	ci left: 1.096635e-02	ci right 1.246937e-02	k: 936	n:80000
KS ci ratio: 5.847441e-02	ci left: 5.163011e-02	ci right 5.475239e-02	k: 4254	n:80000
TOP2A   80000 perm   19 sec   (4163 perm/sec)   p_kst 5.317500e-02   p_cons 1.170000e-02   p_joint 1.393750e-02

Joint ci ratio: 1.099674e-01	ci left: 1.315607e-02	ci right 1.469772e-02	k: 1252	n:90000
Cons ci ratio: 1.203234e-01	ci left: 1.095378e-02	ci right 1.236684e-02	k: 1048	n:90000
KS ci ratio: 5.514165e-02	ci left: 5.169874e-02	ci right 5.464126e-02	k: 4784	n:90000
TOP2A   90000 perm   22 sec   (4103 perm/sec)   p_kst 5.315556e-02   p_cons 1.164444e-02   p_joint 1.391111e-02

Joint ci ratio: 1.094713e-01	ci left: 1.196649e-02	ci right 1.336199e-02	k: 1265	n:100000
Cons ci ratio: 1.185245e-01	ci left: 1.017830e-02	ci right 1.147031e-02	k: 1081	n:100000
KS ci ratio: 5.236749e-02	ci left: 5.166881e-02	ci right 5.445718e-02	k: 5305	n:100000
TOP2A   100000 perm   25 sec   (4048 perm/sec)   p_kst 5.305000e-02   p_cons 1.081000e-02   p_joint 1.265000e-02

Joint ci ratio: 1.060317e-01	ci left: 1.162157e-02	ci right 1.293160e-02	k: 1349	n:110000
Cons ci ratio: 1.135987e-01	ci left: 1.010038e-02	ci right 1.132563e-02	k: 1177	n:110000
KS ci ratio: 4.999653e-02	ci left: 5.160247e-02	ci right 5.425752e-02	k: 5821	n:110000
TOP2A   110000 perm   28 sec   (3995 perm/sec)   p_kst 5.291818e-02   p_cons 1.070000e-02   p_joint 1.226364e-02

Joint ci ratio: 9.592604e-02	ci left: 1.306619e-02	ci right 1.439080e-02	k: 1646	n:120000
Cons ci ratio: 1.081303e-01	ci left: 1.024720e-02	ci right 1.142662e-02	k: 1299	n:120000
KS ci ratio: 4.808537e-02	ci left: 5.121180e-02	ci right 5.374322e-02	k: 6296	n:120000
TOP2A   120000 perm   30 sec   (3940 perm/sec)   p_kst 5.246667e-02   p_cons 1.082500e-02   p_joint 1.371667e-02

Joint ci ratio: 9.871487e-02	ci left: 1.139265e-02	ci right 1.258312e-02	k: 1557	n:130000
Cons ci ratio: 1.036405e-01	ci left: 1.032017e-02	ci right 1.145565e-02	k: 1414	n:130000
KS ci ratio: 4.613029e-02	ci left: 5.140787e-02	ci right 5.384290e-02	k: 6840	n:130000
TOP2A   130000 perm   33 sec   (3889 perm/sec)   p_kst 5.261538e-02   p_cons 1.087692e-02   p_joint 1.197692e-02

Joint ci ratio: 9.719256e-02	ci left: 1.092715e-02	ci right 1.205036e-02	k: 1607	n:140000
Cons ci ratio: 9.989860e-02	ci left: 1.033481e-02	ci right 1.142844e-02	k: 1522	n:140000
KS ci ratio: 4.450404e-02	ci left: 5.133741e-02	ci right 5.368117e-02	k: 7350	n:140000
TOP2A   140000 perm   36 sec   (3837 perm/sec)   p_kst 5.250000e-02   p_cons 1.087143e-02   p_joint 1.147857e-02

Outputting figure to mutsig2_images.part000000000180/TOP2A.6_4736_140000_0.0525_0.010871_0.011479.png
                gene_name: TOP2A
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 15 percent done.
TOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
KS ci ratio: 1.248945e-02	ci left: 9.020630e-01	ci right 9.134982e-01	k: 9079	n:10000
TOX2   10000 perm   2 sec   (5927 perm/sec)   p_kst 9.079000e-01   p_cons 7.097000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TOX2.6_1687_10000_0.9079_0.7097_1.png
                gene_name: TOX2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
TPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
Cons ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KS ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
TPI1   10000 perm   1 sec   (6919 perm/sec)   p_kst 5.190000e-01   p_cons 1.634000e-01   p_joint 3.606000e-01

Outputting figure to mutsig2_images.part000000000180/TPI1.6_889_10000_0.519_0.1634_0.3606.png
                gene_name: TPI1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 19 percent done.
TPTE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
Cons ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
KS ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
TPTE2   10000 perm   2 sec   (6568 perm/sec)   p_kst 3.509000e-01   p_cons 6.527000e-01   p_joint 4.548000e-01

Outputting figure to mutsig2_images.part000000000180/TPTE2.6_1649_10000_0.3509_0.6527_0.4548.png
                gene_name: TPTE2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 21 percent done.
TOM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
Cons ci ratio: 2.675337e-02	ci left: 6.729719e-01	ci right 6.913219e-01	k: 6822	n:10000
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
TOM1L1   10000 perm   2 sec   (6127 perm/sec)   p_kst 2.318000e-01   p_cons 6.822000e-01   p_joint 4.722000e-01

Outputting figure to mutsig2_images.part000000000180/TOM1L1.5_1491_10000_0.2318_0.6822_0.4722.png
                gene_name: TOM1L1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 23 percent done.
TOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
TOP1   10000 perm   2 sec   (6088 perm/sec)   p_kst 3.640000e-01   p_cons 2.188000e-01   p_joint 4.292000e-01

Outputting figure to mutsig2_images.part000000000180/TOP1.5_2382_10000_0.364_0.2188_0.4292.png
                gene_name: TOP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 26 percent done.
TOP3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
Cons ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
KS ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
TOP3A   10000 perm   2 sec   (5739 perm/sec)   p_kst 7.740000e-02   p_cons 5.102000e-01   p_joint 1.784000e-01

Joint ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
Cons ci ratio: 2.729022e-02	ci left: 5.007956e-01	ci right 5.147021e-01	k: 10155	n:20000
KS ci ratio: 9.546324e-02	ci left: 7.402653e-02	ci right 8.149677e-02	k: 1554	n:20000
TOP3A   20000 perm   4 sec   (5165 perm/sec)   p_kst 7.770000e-02   p_cons 5.077500e-01   p_joint 1.242500e-01

Outputting figure to mutsig2_images.part000000000180/TOP3A.5_3082_20000_0.0777_0.50775_0.12425.png
                gene_name: TOP3A
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 28 percent done.
TOPORS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
Cons ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
KS ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
TOPORS   10000 perm   2 sec   (5886 perm/sec)   p_kst 9.039000e-01   p_cons 7.565000e-01   p_joint 9.149000e-01

Outputting figure to mutsig2_images.part000000000180/TOPORS.5_3150_10000_0.9039_0.7565_0.9149.png
                gene_name: TOPORS
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 30 percent done.
TOR1AIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 6.158604e-03	ci left: 9.728080e-01	ci right 9.789104e-01	k: 9760	n:10000
KS ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
TOR1AIP2   10000 perm   2 sec   (6177 perm/sec)   p_kst 2.854000e-01   p_cons 9.760000e-01   p_joint 4.912000e-01

Outputting figure to mutsig2_images.part000000000180/TOR1AIP2.5_1829_10000_0.2854_0.976_0.4912.png
                gene_name: TOR1AIP2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 32 percent done.
TP53BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
KS ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
TP53BP1   10000 perm   2 sec   (5087 perm/sec)   p_kst 5.871000e-01   p_cons 5.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TP53BP1.5_6046_10000_0.5871_0.5682_1.png
                gene_name: TP53BP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
TP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
Cons ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
KS ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
TP63   10000 perm   2 sec   (5911 perm/sec)   p_kst 9.262000e-01   p_cons 1.726000e-01   p_joint 5.153000e-01

Outputting figure to mutsig2_images.part000000000180/TP63.5_2264_10000_0.9262_0.1726_0.5153.png
                gene_name: TP63
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 36 percent done.
TPCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
KS ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
TPCN1   10000 perm   2 sec   (5819 perm/sec)   p_kst 1.968000e-01   p_cons 3.423000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000180/TPCN1.5_2779_10000_0.1968_0.3423_0.279.png
                gene_name: TPCN1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
TPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
TPK1   10000 perm   1 sec   (6703 perm/sec)   p_kst 3.598000e-01   p_cons 7.600000e-02   p_joint 1.301000e-01

Joint ci ratio: 6.053959e-02	ci left: 1.680276e-01	ci right 1.785675e-01	k: 3465	n:20000
Cons ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
KS ci ratio: 3.726903e-02	ci left: 3.494600e-01	ci right 3.627819e-01	k: 7122	n:20000
TPK1   20000 perm   3 sec   (5949 perm/sec)   p_kst 3.561000e-01   p_cons 8.405000e-02   p_joint 1.732500e-01

Outputting figure to mutsig2_images.part000000000180/TPK1.5_764_20000_0.3561_0.08405_0.17325.png
                gene_name: TPK1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 40 percent done.
TOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
TOM1   10000 perm   2 sec   (6564 perm/sec)   p_kst 4.694000e-01   p_cons 9.610000e-02   p_joint 1.634000e-01

Joint ci ratio: 5.583810e-02	ci left: 1.921502e-01	ci right 2.032378e-01	k: 3953	n:20000
Cons ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
KS ci ratio: 2.932329e-02	ci left: 4.649110e-01	ci right 4.787972e-01	k: 9437	n:20000
TOM1   20000 perm   3 sec   (5880 perm/sec)   p_kst 4.718500e-01   p_cons 1.022500e-01   p_joint 1.976500e-01

Outputting figure to mutsig2_images.part000000000180/TOM1.4_1542_20000_0.47185_0.10225_0.19765.png
                gene_name: TOM1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 43 percent done.
TOP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
Cons ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
TOP2B   10000 perm   2 sec   (5483 perm/sec)   p_kst 3.606000e-01   p_cons 7.419000e-01   p_joint 3.787000e-01

Outputting figure to mutsig2_images.part000000000180/TOP2B.4_5010_10000_0.3606_0.7419_0.3787.png
                gene_name: TOP2B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
TOR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
Cons ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
TOR3A   10000 perm   1 sec   (6942 perm/sec)   p_kst 6.923000e-01   p_cons 3.768000e-01   p_joint 7.304000e-01

Outputting figure to mutsig2_images.part000000000180/TOR3A.4_1218_10000_0.6923_0.3768_0.7304.png
                gene_name: TOR3A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
TP73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
Cons ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
KS ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
TP73   10000 perm   2 sec   (6355 perm/sec)   p_kst 4.734000e-01   p_cons 3.350000e-01   p_joint 4.382000e-01

Outputting figure to mutsig2_images.part000000000180/TP73.4_2006_10000_0.4734_0.335_0.4382.png
                gene_name: TP73
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 49 percent done.
TPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
TPP1   10000 perm   2 sec   (6584 perm/sec)   p_kst 7.047000e-01   p_cons 7.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPP1.4_1744_10000_0.7047_0.7921_1.png
                gene_name: TPP1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
TPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
Cons ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
KS ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
TPP2   10000 perm   2 sec   (5986 perm/sec)   p_kst 3.242000e-01   p_cons 2.760000e-02   p_joint 1.837000e-01

Joint ci ratio: 3.715554e-02	ci left: 3.508540e-01	ci right 3.641875e-01	k: 7150	n:20000
Cons ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
KS ci ratio: 4.054605e-02	ci left: 3.119952e-01	ci right 3.249576e-01	k: 6369	n:20000
TPP2   20000 perm   4 sec   (5366 perm/sec)   p_kst 3.184500e-01   p_cons 2.745000e-02   p_joint 3.575000e-01

Joint ci ratio: 3.229203e-02	ci left: 3.240485e-01	ci right 3.347179e-01	k: 9881	n:30000
Cons ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
KS ci ratio: 3.303216e-02	ci left: 3.141583e-01	ci right 3.247434e-01	k: 9583	n:30000
TPP2   30000 perm   6 sec   (5137 perm/sec)   p_kst 3.194333e-01   p_cons 5.340000e-02   p_joint 3.293667e-01

Outputting figure to mutsig2_images.part000000000180/TPP2.4_3866_30000_0.31943_0.0534_0.32937.png
                gene_name: TPP2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 53 percent done.
TOPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
Cons ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
TOPBP1   10000 perm   2 sec   (5773 perm/sec)   p_kst 9.240000e-02   p_cons 2.372000e-01   p_joint 1.466000e-01

Joint ci ratio: 7.534660e-02	ci left: 1.146907e-01	ci right 1.237203e-01	k: 2383	n:20000
Cons ci ratio: 4.973419e-02	ci left: 2.310705e-01	ci right 2.429060e-01	k: 4739	n:20000
KS ci ratio: 8.653582e-02	ci left: 8.900926e-02	ci right 9.710950e-02	k: 1860	n:20000
TOPBP1   20000 perm   4 sec   (5166 perm/sec)   p_kst 9.300000e-02   p_cons 2.369500e-01   p_joint 1.191500e-01

Outputting figure to mutsig2_images.part000000000180/TOPBP1.3_4677_20000_0.093_0.23695_0.11915.png
                gene_name: TOPBP1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 55 percent done.
TOR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
TOR1A   10000 perm   1 sec   (7418 perm/sec)   p_kst 4.264000e-01   p_cons 3.400000e-03   p_joint 2.360000e-02

Joint ci ratio: 1.151709e-01	ci left: 5.158846e-02	ci right 5.794177e-02	k: 1094	n:20000
Cons ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
KS ci ratio: 3.129027e-02	ci left: 4.327553e-01	ci right 4.465622e-01	k: 8793	n:20000
TOR1A   20000 perm   3 sec   (6538 perm/sec)   p_kst 4.396500e-01   p_cons 4.450000e-03   p_joint 5.470000e-02

Joint ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
Cons ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
KS ci ratio: 2.568179e-02	ci left: 4.314767e-01	ci right 4.427355e-01	k: 13113	n:30000
TOR1A   30000 perm   5 sec   (6196 perm/sec)   p_kst 4.371000e-01   p_cons 4.233333e-03   p_joint 3.090000e-02

Joint ci ratio: 9.207318e-02	ci left: 4.135059e-02	ci right 4.536604e-02	k: 1733	n:40000
Cons ci ratio: 2.965237e-01	ci left: 3.705617e-03	ci right 5.017941e-03	k: 173	n:40000
KS ci ratio: 2.222334e-02	ci left: 4.326307e-01	ci right 4.423784e-01	k: 17500	n:40000
TOR1A   40000 perm   7 sec   (5971 perm/sec)   p_kst 4.375000e-01   p_cons 4.325000e-03   p_joint 4.332500e-02

Joint ci ratio: 8.961157e-02	ci left: 3.520584e-02	ci right 3.852821e-02	k: 1842	n:50000
Cons ci ratio: 2.619140e-01	ci left: 3.876169e-03	ci right 5.062495e-03	k: 222	n:50000
KS ci ratio: 1.990805e-02	ci left: 4.323864e-01	ci right 4.411010e-01	k: 21837	n:50000
TOR1A   50000 perm   9 sec   (5804 perm/sec)   p_kst 4.367400e-01   p_cons 4.440000e-03   p_joint 3.684000e-02

Joint ci ratio: 8.297173e-02	ci left: 3.437654e-02	ci right 3.736857e-02	k: 2151	n:60000
Cons ci ratio: 2.345587e-01	ci left: 4.089995e-03	ci right 5.192096e-03	k: 277	n:60000
KS ci ratio: 1.819540e-02	ci left: 4.321768e-01	ci right 4.401293e-01	k: 26169	n:60000
TOR1A   60000 perm   11 sec   (5662 perm/sec)   p_kst 4.361500e-01   p_cons 4.616667e-03   p_joint 3.585000e-02

Joint ci ratio: 7.679583e-02	ci left: 3.450590e-02	ci right 3.727560e-02	k: 2511	n:70000
Cons ci ratio: 2.200174e-01	ci left: 4.017668e-03	ci right 5.024084e-03	k: 315	n:70000
KS ci ratio: 1.680153e-02	ci left: 4.337635e-01	ci right 4.411274e-01	k: 30621	n:70000
TOR1A   70000 perm   13 sec   (5540 perm/sec)   p_kst 4.374429e-01   p_cons 4.500000e-03   p_joint 3.587143e-02

Joint ci ratio: 6.853432e-02	ci left: 3.793943e-02	ci right 4.064411e-02	k: 3142	n:80000
Cons ci ratio: 2.075886e-01	ci left: 3.976864e-03	ci right 4.909636e-03	k: 354	n:80000
KS ci ratio: 1.571981e-02	ci left: 4.338961e-01	ci right 4.407834e-01	k: 34987	n:80000
TOR1A   80000 perm   15 sec   (5422 perm/sec)   p_kst 4.373375e-01   p_cons 4.425000e-03   p_joint 3.927500e-02

Joint ci ratio: 6.410581e-02	ci left: 3.860870e-02	ci right 4.117662e-02	k: 3589	n:90000
Cons ci ratio: 1.929163e-01	ci left: 4.126079e-03	ci right 5.017427e-03	k: 410	n:90000
KS ci ratio: 1.482462e-02	ci left: 4.339669e-01	ci right 4.404594e-01	k: 39349	n:90000
TOR1A   90000 perm   17 sec   (5317 perm/sec)   p_kst 4.372111e-01   p_cons 4.555556e-03   p_joint 3.987778e-02

Joint ci ratio: 5.687449e-02	ci left: 4.405873e-02	ci right 4.664773e-02	k: 4534	n:100000
Cons ci ratio: 1.819522e-01	ci left: 4.199572e-03	ci right 5.049554e-03	k: 461	n:100000
KS ci ratio: 1.405907e-02	ci left: 4.343023e-01	ci right 4.404614e-01	k: 43738	n:100000
TOR1A   100000 perm   19 sec   (5222 perm/sec)   p_kst 4.373800e-01   p_cons 4.610000e-03   p_joint 4.534000e-02

Joint ci ratio: 5.999216e-02	ci left: 3.624160e-02	ci right 3.849197e-02	k: 4109	n:110000
Cons ci ratio: 1.740361e-01	ci left: 4.191289e-03	ci right 4.998809e-03	k: 504	n:110000
KS ci ratio: 1.341790e-02	ci left: 4.339660e-01	ci right 4.398373e-01	k: 48059	n:110000
TOR1A   110000 perm   21 sec   (5128 perm/sec)   p_kst 4.369000e-01   p_cons 4.581818e-03   p_joint 3.735455e-02

Joint ci ratio: 6.026394e-02	ci left: 3.303100e-02	ci right 3.509160e-02	k: 4086	n:120000
Cons ci ratio: 1.672240e-01	ci left: 4.177069e-03	ci right 4.947175e-03	k: 546	n:120000
KS ci ratio: 1.285800e-02	ci left: 4.336580e-01	ci right 4.392784e-01	k: 52376	n:120000
TOR1A   120000 perm   24 sec   (5038 perm/sec)   p_kst 4.364667e-01   p_cons 4.550000e-03   p_joint 3.405000e-02

Joint ci ratio: 5.274649e-02	ci left: 3.967786e-02	ci right 4.183499e-02	k: 5297	n:130000
Cons ci ratio: 1.553024e-01	ci left: 4.498068e-03	ci right 5.262736e-03	k: 633	n:130000
KS ci ratio: 1.237150e-02	ci left: 4.330560e-01	ci right 4.384546e-01	k: 56648	n:130000
TOR1A   130000 perm   26 sec   (4944 perm/sec)   p_kst 4.357538e-01   p_cons 4.869231e-03   p_joint 4.074615e-02

Joint ci ratio: 4.754457e-02	ci left: 4.520511e-02	ci right 4.741373e-02	k: 6482	n:140000
Cons ci ratio: 1.500700e-01	ci left: 4.485925e-03	ci right 5.220528e-03	k: 678	n:140000
KS ci ratio: 1.190618e-02	ci left: 4.337857e-01	ci right 4.389884e-01	k: 61094	n:140000
TOR1A   140000 perm   29 sec   (4853 perm/sec)   p_kst 4.363857e-01   p_cons 4.842857e-03   p_joint 4.630000e-02

Joint ci ratio: 5.151069e-02	ci left: 3.621497e-02	ci right 3.813630e-02	k: 5575	n:150000
Cons ci ratio: 1.447318e-01	ci left: 4.514330e-03	ci right 5.225016e-03	k: 729	n:150000
KS ci ratio: 1.150260e-02	ci left: 4.338682e-01	ci right 4.388943e-01	k: 65457	n:150000
TOR1A   150000 perm   31 sec   (4771 perm/sec)   p_kst 4.363800e-01   p_cons 4.860000e-03   p_joint 3.716667e-02

Joint ci ratio: 4.874850e-02	ci left: 3.789604e-02	ci right 3.979572e-02	k: 6214	n:160000
Cons ci ratio: 1.401963e-01	ci left: 4.521494e-03	ci right 5.209137e-03	k: 777	n:160000
KS ci ratio: 1.114186e-02	ci left: 4.337494e-01	ci right 4.386154e-01	k: 69789	n:160000
TOR1A   160000 perm   34 sec   (4694 perm/sec)   p_kst 4.361813e-01   p_cons 4.856250e-03   p_joint 3.883750e-02

Joint ci ratio: 4.727601e-02	ci left: 3.795089e-02	ci right 3.979429e-02	k: 6607	n:170000
Cons ci ratio: 1.362279e-01	ci left: 4.516755e-03	ci right 5.182657e-03	k: 823	n:170000
KS ci ratio: 1.080827e-02	ci left: 4.338643e-01	ci right 4.385849e-01	k: 74158	n:170000
TOR1A   170000 perm   37 sec   (4620 perm/sec)   p_kst 4.362235e-01   p_cons 4.841176e-03   p_joint 3.886471e-02

Joint ci ratio: 4.776604e-02	ci left: 3.520451e-02	ci right 3.693270e-02	k: 6491	n:180000
Cons ci ratio: 1.320458e-01	ci left: 4.550394e-03	ci right 5.199044e-03	k: 876	n:180000
KS ci ratio: 1.050212e-02	ci left: 4.340072e-01	ci right 4.385948e-01	k: 78534	n:180000
TOR1A   180000 perm   40 sec   (4542 perm/sec)   p_kst 4.363000e-01   p_cons 4.866667e-03   p_joint 3.606111e-02

Joint ci ratio: 4.841865e-02	ci left: 3.253936e-02	ci right 3.415913e-02	k: 6335	n:190000
Cons ci ratio: 1.281573e-01	ci left: 4.585866e-03	ci right 5.218859e-03	k: 930	n:190000
KS ci ratio: 1.023461e-02	ci left: 4.334635e-01	ci right 4.379279e-01	k: 82782	n:190000
TOR1A   190000 perm   42 sec   (4472 perm/sec)   p_kst 4.356947e-01   p_cons 4.894737e-03   p_joint 3.334211e-02

Joint ci ratio: 4.947341e-02	ci left: 2.968152e-02	ci right 3.119213e-02	k: 6086	n:200000
Cons ci ratio: 1.242137e-01	ci left: 4.647113e-03	ci right 5.267369e-03	k: 990	n:200000
KS ci ratio: 9.982766e-03	ci left: 4.331605e-01	ci right 4.375113e-01	k: 87067	n:200000
TOR1A   200000 perm   45 sec   (4403 perm/sec)   p_kst 4.353350e-01   p_cons 4.950000e-03   p_joint 3.043000e-02

Joint ci ratio: 4.654908e-02	ci left: 3.190574e-02	ci right 3.343100e-02	k: 6859	n:210000
Cons ci ratio: 1.220809e-01	ci left: 4.587346e-03	ci right 5.188351e-03	k: 1025	n:210000
KS ci ratio: 9.735334e-03	ci left: 4.335587e-01	ci right 4.378049e-01	k: 91493	n:210000
TOR1A   210000 perm   48 sec   (4336 perm/sec)   p_kst 4.356810e-01   p_cons 4.880952e-03   p_joint 3.266190e-02

Joint ci ratio: 4.616620e-02	ci left: 3.099877e-02	ci right 3.246815e-02	k: 6980	n:220000
Cons ci ratio: 1.189884e-01	ci left: 4.616888e-03	ci right 5.205363e-03	k: 1079	n:220000
KS ci ratio: 9.508589e-03	ci left: 4.337584e-01	ci right 4.379070e-01	k: 95883	n:220000
TOR1A   220000 perm   52 sec   (4272 perm/sec)   p_kst 4.358318e-01   p_cons 4.904545e-03   p_joint 3.172727e-02

Joint ci ratio: 4.482679e-02	ci left: 3.145647e-02	ci right 3.290317e-02	k: 7400	n:230000
Cons ci ratio: 1.163777e-01	ci left: 4.622927e-03	ci right 5.198354e-03	k: 1128	n:230000
KS ci ratio: 9.303972e-03	ci left: 4.335723e-01	ci right 4.376294e-01	k: 100188	n:230000
TOR1A   230000 perm   55 sec   (4210 perm/sec)   p_kst 4.356000e-01   p_cons 4.904348e-03   p_joint 3.217391e-02

Joint ci ratio: 4.507510e-02	ci left: 2.986096e-02	ci right 3.124208e-02	k: 7331	n:240000
Cons ci ratio: 1.142733e-01	ci left: 4.600254e-03	ci right 5.161806e-03	k: 1170	n:240000
KS ci ratio: 9.101137e-03	ci left: 4.339898e-01	ci right 4.379618e-01	k: 104634	n:240000
TOR1A   240000 perm   58 sec   (4147 perm/sec)   p_kst 4.359750e-01   p_cons 4.875000e-03   p_joint 3.054583e-02

Joint ci ratio: 4.427665e-02	ci left: 2.972650e-02	ci right 3.107642e-02	k: 7599	n:250000
Cons ci ratio: 1.120010e-01	ci left: 4.602811e-03	ci right 5.152765e-03	k: 1218	n:250000
KS ci ratio: 8.920215e-03	ci left: 4.338670e-01	ci right 4.377585e-01	k: 108953	n:250000
TOR1A   250000 perm   61 sec   (4088 perm/sec)   p_kst 4.358120e-01   p_cons 4.872000e-03   p_joint 3.039600e-02

Joint ci ratio: 4.496589e-02	ci left: 2.776103e-02	ci right 2.904182e-02	k: 7383	n:260000
Cons ci ratio: 1.097287e-01	ci left: 4.616496e-03	ci right 5.156170e-03	k: 1269	n:260000
KS ci ratio: 8.748849e-03	ci left: 4.338005e-01	ci right 4.376163e-01	k: 113284	n:260000
TOR1A   260000 perm   65 sec   (4030 perm/sec)   p_kst 4.357077e-01   p_cons 4.880769e-03   p_joint 2.839615e-02

Joint ci ratio: 4.343072e-02	ci left: 2.865242e-02	ci right 2.992808e-02	k: 7907	n:270000
Cons ci ratio: 1.077944e-01	ci left: 4.611250e-03	ci right 5.140205e-03	k: 1315	n:270000
KS ci ratio: 8.587510e-03	ci left: 4.337101e-01	ci right 4.374543e-01	k: 117607	n:270000
TOR1A   270000 perm   68 sec   (3972 perm/sec)   p_kst 4.355815e-01   p_cons 4.870370e-03   p_joint 2.928519e-02

Joint ci ratio: 4.020529e-02	ci left: 3.217516e-02	ci right 3.349882e-02	k: 9193	n:280000
Cons ci ratio: 1.058419e-01	ci left: 4.616887e-03	ci right 5.136300e-03	k: 1364	n:280000
KS ci ratio: 8.431166e-03	ci left: 4.338373e-01	ci right 4.375140e-01	k: 121989	n:280000
TOR1A   280000 perm   72 sec   (3915 perm/sec)   p_kst 4.356750e-01   p_cons 4.871429e-03   p_joint 3.283214e-02

Joint ci ratio: 3.953900e-02	ci left: 3.213420e-02	ci right 3.343378e-02	k: 9506	n:290000
Cons ci ratio: 1.032967e-01	ci left: 4.686043e-03	ci right 5.199789e-03	k: 1432	n:290000
KS ci ratio: 8.287477e-03	ci left: 4.336944e-01	ci right 4.373069e-01	k: 126295	n:290000
TOR1A   290000 perm   75 sec   (3860 perm/sec)   p_kst 4.355000e-01   p_cons 4.937931e-03   p_joint 3.277931e-02

Joint ci ratio: 3.868134e-02	ci left: 3.245938e-02	ci right 3.374299e-02	k: 9929	n:300000
Cons ci ratio: 1.016437e-01	ci left: 4.682493e-03	ci right 5.187144e-03	k: 1479	n:300000
KS ci ratio: 8.147465e-03	ci left: 4.337680e-01	ci right 4.373199e-01	k: 130663	n:300000
TOR1A   300000 perm   79 sec   (3807 perm/sec)   p_kst 4.355433e-01   p_cons 4.930000e-03   p_joint 3.309667e-02

Joint ci ratio: 3.775088e-02	ci left: 3.297801e-02	ci right 3.425008e-02	k: 10419	n:310000
Cons ci ratio: 1.000347e-01	ci left: 4.682378e-03	ci right 5.178559e-03	k: 1527	n:310000
KS ci ratio: 8.014739e-03	ci left: 4.338116e-01	ci right 4.373057e-01	k: 135023	n:310000
TOR1A   310000 perm   83 sec   (3756 perm/sec)   p_kst 4.355581e-01   p_cons 4.925806e-03   p_joint 3.360968e-02

Joint ci ratio: 3.613151e-02	ci left: 3.483675e-02	ci right 3.612168e-02	k: 11352	n:320000
Cons ci ratio: 9.872033e-02	ci left: 4.660992e-03	ci right 5.148041e-03	k: 1568	n:320000
KS ci ratio: 7.887041e-03	ci left: 4.339311e-01	ci right 4.373701e-01	k: 139408	n:320000
TOR1A   320000 perm   86 sec   (3706 perm/sec)   p_kst 4.356500e-01   p_cons 4.900000e-03   p_joint 3.547500e-02

Outputting figure to mutsig2_images.part000000000180/TOR1A.3_1019_320000_0.43565_0.0049_0.035475.png
                gene_name: TOR1A
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0047 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.036 

Current progress: 57 percent done.
TOR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
Cons ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
KS ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
TOR1B   10000 perm   1 sec   (7172 perm/sec)   p_kst 3.880000e-02   p_cons 5.720000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
TOR1B   20000 perm   3 sec   (6335 perm/sec)   p_kst 4.085000e-02   p_cons 6.230000e-02   p_joint 4.750000e-02

Joint ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
Cons ci ratio: 8.703532e-02	ci left: 6.057029e-02	ci right 6.611464e-02	k: 1899	n:30000
KS ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
TOR1B   30000 perm   5 sec   (6028 perm/sec)   p_kst 4.143333e-02   p_cons 6.330000e-02   p_joint 3.416667e-02

Joint ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
Cons ci ratio: 7.560367e-02	ci left: 6.058918e-02	ci right 6.537451e-02	k: 2518	n:40000
KS ci ratio: 9.343317e-02	ci left: 4.017727e-02	ci right 4.413955e-02	k: 1685	n:40000
TOR1B   40000 perm   7 sec   (5838 perm/sec)   p_kst 4.212500e-02   p_cons 6.295000e-02   p_joint 3.362500e-02

Joint ci ratio: 7.614206e-02	ci left: 4.842003e-02	ci right 5.227238e-02	k: 2516	n:50000
Cons ci ratio: 6.760780e-02	ci left: 6.086611e-02	ci right 6.514480e-02	k: 3149	n:50000
KS ci ratio: 8.370421e-02	ci left: 4.025843e-02	ci right 4.379500e-02	k: 2100	n:50000
TOR1B   50000 perm   9 sec   (5679 perm/sec)   p_kst 4.200000e-02   p_cons 6.298000e-02   p_joint 5.032000e-02

Outputting figure to mutsig2_images.part000000000180/TOR1B.3_1031_50000_0.042_0.06298_0.05032.png
                gene_name: TOR1B
               theta_stop: 0.084 
                    nperm: 50000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 60 percent done.
TOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 7.262343e-03	ci left: 9.632049e-01	ci right 9.703198e-01	k: 9669	n:10000
KS ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
TOX   10000 perm   1 sec   (7050 perm/sec)   p_kst 1.287000e-01   p_cons 9.669000e-01   p_joint 3.460000e-01

Joint ci ratio: 5.151684e-02	ci left: 2.186831e-01	ci right 2.302971e-01	k: 4489	n:20000
Cons ci ratio: 5.035036e-03	ci left: 9.655704e-01	ci right 9.704923e-01	k: 19362	n:20000
KS ci ratio: 7.335194e-02	ci left: 1.203479e-01	ci right 1.295615e-01	k: 2498	n:20000
TOX   20000 perm   3 sec   (6246 perm/sec)   p_kst 1.249000e-01   p_cons 9.681000e-01   p_joint 2.244500e-01

Outputting figure to mutsig2_images.part000000000180/TOX.3_1617_20000_0.1249_0.9681_0.22445.png
                gene_name: TOX
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 62 percent done.
TPBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
KS ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
TPBG   10000 perm   1 sec   (6823 perm/sec)   p_kst 3.220000e-02   p_cons 6.630000e-02   p_joint 1.200000e-02

Joint ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
Cons ci ratio: 1.020935e-01	ci left: 6.513471e-02	ci right 7.219132e-02	k: 1372	n:20000
KS ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
TPBG   20000 perm   3 sec   (6066 perm/sec)   p_kst 3.100000e-02   p_cons 6.860000e-02   p_joint 1.895000e-02

Joint ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
Cons ci ratio: 8.276778e-02	ci left: 6.668016e-02	ci right 7.247020e-02	k: 2086	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
TPBG   30000 perm   5 sec   (5776 perm/sec)   p_kst 3.066667e-02   p_cons 6.953333e-02   p_joint 1.323333e-02

Joint ci ratio: 1.274588e-01	ci left: 2.162584e-02	ci right 2.459395e-02	k: 923	n:40000
Cons ci ratio: 7.128995e-02	ci left: 6.776424e-02	ci right 7.279836e-02	k: 2810	n:40000
KS ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
TPBG   40000 perm   7 sec   (5566 perm/sec)   p_kst 3.120000e-02   p_cons 7.025000e-02   p_joint 2.307500e-02

Joint ci ratio: 1.246356e-01	ci left: 1.818962e-02	ci right 2.062663e-02	k: 969	n:50000
Cons ci ratio: 6.395734e-02	ci left: 6.764067e-02	ci right 7.212943e-02	k: 3493	n:50000
KS ci ratio: 9.704672e-02	ci left: 3.006439e-02	ci right 3.315031e-02	k: 1579	n:50000
TPBG   50000 perm   9 sec   (5412 perm/sec)   p_kst 3.158000e-02   p_cons 6.986000e-02   p_joint 1.938000e-02

Joint ci ratio: 1.288846e-01	ci left: 1.420393e-02	ci right 1.617671e-02	k: 910	n:60000
Cons ci ratio: 5.877618e-02	ci left: 6.698453e-02	ci right 7.105728e-02	k: 4140	n:60000
KS ci ratio: 8.851898e-02	ci left: 3.024725e-02	ci right 3.306496e-02	k: 1898	n:60000
TPBG   60000 perm   11 sec   (5296 perm/sec)   p_kst 3.163333e-02   p_cons 6.900000e-02   p_joint 1.516667e-02

Joint ci ratio: 1.236375e-01	ci left: 1.328117e-02	ci right 1.504516e-02	k: 990	n:70000
Cons ci ratio: 5.442328e-02	ci left: 6.711906e-02	ci right 7.088819e-02	k: 4829	n:70000
KS ci ratio: 8.244398e-02	ci left: 2.999438e-02	ci right 3.258752e-02	k: 2189	n:70000
TPBG   70000 perm   13 sec   (5196 perm/sec)   p_kst 3.127143e-02   p_cons 6.898571e-02   p_joint 1.414286e-02

Joint ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
Cons ci ratio: 5.080956e-02	ci left: 6.748778e-02	ci right 7.101853e-02	k: 5539	n:80000
KS ci ratio: 7.703768e-02	ci left: 3.014095e-02	ci right 3.256819e-02	k: 2507	n:80000
TPBG   80000 perm   16 sec   (5094 perm/sec)   p_kst 3.133750e-02   p_cons 6.923750e-02   p_joint 1.313750e-02

Joint ci ratio: 1.068944e-01	ci left: 1.393467e-02	ci right 1.551906e-02	k: 1324	n:90000
Cons ci ratio: 4.772504e-02	ci left: 6.806669e-02	ci right 7.140556e-02	k: 6275	n:90000
KS ci ratio: 7.305393e-02	ci left: 2.986634e-02	ci right 3.214179e-02	k: 2789	n:90000
TPBG   90000 perm   18 sec   (5001 perm/sec)   p_kst 3.098889e-02   p_cons 6.972222e-02   p_joint 1.471111e-02

Joint ci ratio: 1.028079e-01	ci left: 1.359276e-02	ci right 1.507561e-02	k: 1432	n:100000
Cons ci ratio: 4.534357e-02	ci left: 6.796103e-02	ci right 7.112399e-02	k: 6953	n:100000
KS ci ratio: 6.897285e-02	ci left: 3.020971e-02	ci right 3.237759e-02	k: 3128	n:100000
TPBG   100000 perm   20 sec   (4914 perm/sec)   p_kst 3.128000e-02   p_cons 6.953000e-02   p_joint 1.432000e-02

Joint ci ratio: 1.110537e-01	ci left: 1.057763e-02	ci right 1.183015e-02	k: 1231	n:110000
Cons ci ratio: 4.314679e-02	ci left: 6.829201e-02	ci right 7.131254e-02	k: 7677	n:110000
KS ci ratio: 6.557547e-02	ci left: 3.043091e-02	ci right 3.250299e-02	k: 3460	n:110000
TPBG   110000 perm   23 sec   (4824 perm/sec)   p_kst 3.145455e-02   p_cons 6.979091e-02   p_joint 1.119091e-02

Joint ci ratio: 1.106533e-01	ci left: 9.776963e-03	ci right 1.093022e-02	k: 1241	n:120000
Cons ci ratio: 4.129138e-02	ci left: 6.841407e-02	ci right 7.130676e-02	k: 8382	n:120000
KS ci ratio: 6.296162e-02	ci left: 3.030556e-02	ci right 3.228384e-02	k: 3754	n:120000
TPBG   120000 perm   25 sec   (4744 perm/sec)   p_kst 3.128333e-02   p_cons 6.985000e-02   p_joint 1.034167e-02

Joint ci ratio: 1.080081e-01	ci left: 9.488693e-03	ci right 1.057948e-02	k: 1303	n:130000
Cons ci ratio: 3.958855e-02	ci left: 6.874073e-02	ci right 7.152463e-02	k: 9116	n:130000
KS ci ratio: 6.029234e-02	ci left: 3.054198e-02	ci right 3.244822e-02	k: 4093	n:130000
TPBG   130000 perm   28 sec   (4666 perm/sec)   p_kst 3.148462e-02   p_cons 7.012308e-02   p_joint 1.002308e-02

Joint ci ratio: 9.172168e-02	ci left: 1.228751e-02	ci right 1.347565e-02	k: 1802	n:140000
Cons ci ratio: 3.809075e-02	ci left: 6.898741e-02	ci right 7.167327e-02	k: 9845	n:140000
KS ci ratio: 5.800363e-02	ci left: 3.067572e-02	ci right 3.251518e-02	k: 4422	n:140000
TPBG   140000 perm   30 sec   (4591 perm/sec)   p_kst 3.158571e-02   p_cons 7.032143e-02   p_joint 1.287143e-02

Outputting figure to mutsig2_images.part000000000180/TPBG.3_1267_140000_0.031586_0.070321_0.012871.png
                gene_name: TPBG
               theta_stop: 0.092 
                    nperm: 140000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 64 percent done.
TPM3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
Cons ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
TPM3   10000 perm   1 sec   (7493 perm/sec)   p_kst 5.456000e-01   p_cons 2.672000e-01   p_joint 6.687000e-01

Outputting figure to mutsig2_images.part000000000180/TPM3.2_1285_10000_0.5456_0.2672_0.6687.png
                gene_name: TPM3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 66 percent done.
TPSAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
TPSAB1   10000 perm   1 sec   (7297 perm/sec)   p_kst 3.531000e-01   p_cons 3.525000e-01   p_joint 4.616000e-01

Outputting figure to mutsig2_images.part000000000180/TPSAB1.3_848_10000_0.3531_0.3525_0.4616.png
                gene_name: TPSAB1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 68 percent done.
TPX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
TPX2   10000 perm   2 sec   (6508 perm/sec)   p_kst 9.324000e-01   p_cons 2.516000e-01   p_joint 6.114000e-01

Outputting figure to mutsig2_images.part000000000180/TPX2.3_2308_10000_0.9324_0.2516_0.6114.png
                gene_name: TPX2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
TRAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
Cons ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
TRAF3   10000 perm   1 sec   (7487 perm/sec)   p_kst 2.300000e-02   p_cons 5.708000e-01   p_joint 1.021000e-01

Joint ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
Cons ci ratio: 2.406872e-02	ci left: 5.632041e-01	ci right 5.769755e-01	k: 11402	n:20000
KS ci ratio: 1.784803e-01	ci left: 2.144505e-02	ci right 2.569502e-02	k: 470	n:20000
TRAF3   20000 perm   3 sec   (6622 perm/sec)   p_kst 2.350000e-02   p_cons 5.701000e-01   p_joint 4.420000e-02

Joint ci ratio: 9.656684e-02	ci left: 4.954696e-02	ci right 5.460690e-02	k: 1561	n:30000
Cons ci ratio: 1.970459e-02	ci left: 5.631728e-01	ci right 5.744139e-01	k: 17064	n:30000
KS ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
TRAF3   30000 perm   5 sec   (6275 perm/sec)   p_kst 2.220000e-02   p_cons 5.688000e-01   p_joint 5.203333e-02

Joint ci ratio: 9.152281e-02	ci left: 4.183960e-02	ci right 4.587696e-02	k: 1753	n:40000
Cons ci ratio: 1.713452e-02	ci left: 5.619268e-01	ci right 5.716635e-01	k: 22672	n:40000
KS ci ratio: 1.337423e-01	ci left: 1.961722e-02	ci right 2.245291e-02	k: 840	n:40000
TRAF3   40000 perm   7 sec   (6047 perm/sec)   p_kst 2.100000e-02   p_cons 5.668000e-01   p_joint 4.382500e-02

Joint ci ratio: 7.800369e-02	ci left: 4.620146e-02	ci right 4.997123e-02	k: 2403	n:50000
Cons ci ratio: 1.532755e-02	ci left: 5.623828e-01	ci right 5.710894e-01	k: 28337	n:50000
KS ci ratio: 1.142563e-01	ci left: 2.168437e-02	ci right 2.433141e-02	k: 1149	n:50000
TRAF3   50000 perm   9 sec   (5856 perm/sec)   p_kst 2.298000e-02   p_cons 5.667400e-01   p_joint 4.806000e-02

Joint ci ratio: 5.900608e-02	ci left: 6.649137e-02	ci right 7.055048e-02	k: 4110	n:60000
Cons ci ratio: 1.402369e-02	ci left: 5.616558e-01	ci right 5.696046e-01	k: 33938	n:60000
KS ci ratio: 1.044954e-01	ci left: 2.171788e-02	ci right 2.412857e-02	k: 1374	n:60000
TRAF3   60000 perm   11 sec   (5695 perm/sec)   p_kst 2.290000e-02   p_cons 5.656333e-01   p_joint 6.850000e-02

Joint ci ratio: 7.467838e-02	ci left: 3.645537e-02	ci right 3.929739e-02	k: 2650	n:70000
Cons ci ratio: 1.268340e-02	ci left: 5.734157e-01	ci right 5.807493e-01	k: 40396	n:70000
KS ci ratio: 9.690386e-02	ci left: 2.173481e-02	ci right 2.396213e-02	k: 1598	n:70000
TRAF3   70000 perm   13 sec   (5566 perm/sec)   p_kst 2.282857e-02   p_cons 5.770857e-01   p_joint 3.785714e-02

Outputting figure to mutsig2_images.part000000000180/TRAF3.3_1747_70000_0.022829_0.57709_0.037857.png
                gene_name: TRAF3
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 72 percent done.
TRAF3IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
TRAF3IP1   10000 perm   1 sec   (6743 perm/sec)   p_kst 1.629000e-01   p_cons 5.240000e-02   p_joint 4.840000e-02

Joint ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 6.525467e-02	ci left: 1.478393e-01	ci right 1.578618e-01	k: 3056	n:20000
TRAF3IP1   20000 perm   3 sec   (5956 perm/sec)   p_kst 1.528000e-01   p_cons 5.225000e-02   p_joint 5.410000e-02

Joint ci ratio: 1.445296e-01	ci left: 2.220120e-02	ci right 2.569183e-02	k: 717	n:30000
Cons ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
KS ci ratio: 5.363649e-02	ci left: 1.470645e-01	ci right 1.552032e-01	k: 4533	n:30000
TRAF3IP1   30000 perm   5 sec   (5700 perm/sec)   p_kst 1.511000e-01   p_cons 5.553333e-02   p_joint 2.390000e-02

Joint ci ratio: 1.172691e-01	ci left: 2.557923e-02	ci right 2.878991e-02	k: 1086	n:40000
Cons ci ratio: 8.033883e-02	ci left: 5.391376e-02	ci right 5.845095e-02	k: 2246	n:40000
KS ci ratio: 4.527152e-02	ci left: 1.542646e-01	ci right 1.614351e-01	k: 6313	n:40000
TRAF3IP1   40000 perm   7 sec   (5528 perm/sec)   p_kst 1.578250e-01   p_cons 5.615000e-02   p_joint 2.715000e-02

Joint ci ratio: 1.055596e-01	ci left: 2.542144e-02	ci right 2.827385e-02	k: 1341	n:50000
Cons ci ratio: 7.209908e-02	ci left: 5.380391e-02	ci right 5.784786e-02	k: 2790	n:50000
KS ci ratio: 4.043589e-02	ci left: 1.550112e-01	ci right 1.614285e-01	k: 7910	n:50000
TRAF3IP1   50000 perm   9 sec   (5375 perm/sec)   p_kst 1.582000e-01   p_cons 5.580000e-02   p_joint 2.682000e-02

Joint ci ratio: 1.080469e-01	ci left: 2.030561e-02	ci right 2.264100e-02	k: 1287	n:60000
Cons ci ratio: 6.571548e-02	ci left: 5.414064e-02	ci right 5.783579e-02	k: 3358	n:60000
KS ci ratio: 3.694793e-02	ci left: 1.550402e-01	ci right 1.608930e-01	k: 9477	n:60000
TRAF3IP1   60000 perm   11 sec   (5257 perm/sec)   p_kst 1.579500e-01   p_cons 5.596667e-02   p_joint 2.145000e-02

Joint ci ratio: 1.044382e-01	ci left: 1.869726e-02	ci right 2.077140e-02	k: 1380	n:70000
Cons ci ratio: 6.079834e-02	ci left: 5.435028e-02	ci right 5.777235e-02	k: 3923	n:70000
KS ci ratio: 3.416619e-02	ci left: 1.555746e-01	ci right 1.609966e-01	k: 11079	n:70000
TRAF3IP1   70000 perm   14 sec   (5140 perm/sec)   p_kst 1.582714e-01   p_cons 5.604286e-02   p_joint 1.971429e-02

Joint ci ratio: 8.953419e-02	ci left: 2.235130e-02	ci right 2.445846e-02	k: 1871	n:80000
Cons ci ratio: 6.131170e-02	ci left: 4.712008e-02	ci right 5.011276e-02	k: 3888	n:80000
KS ci ratio: 3.187566e-02	ci left: 1.564474e-01	ci right 1.615274e-01	k: 12718	n:80000
TRAF3IP1   80000 perm   16 sec   (5040 perm/sec)   p_kst 1.589750e-01   p_cons 4.860000e-02   p_joint 2.338750e-02

Outputting figure to mutsig2_images.part000000000180/TRAF3IP1.3_2144_80000_0.15898_0.0486_0.023387.png
                gene_name: TRAF3IP1
               theta_stop: 0.090 
                    nperm: 80000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 74 percent done.
TOMM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
TOMM34   10000 perm   1 sec   (7231 perm/sec)   p_kst 5.800000e-02   p_cons 1.680000e-01   p_joint 2.413000e-01

Joint ci ratio: 5.308208e-02	ci left: 2.085310e-01	ci right 2.199522e-01	k: 4284	n:20000
Cons ci ratio: 6.327504e-02	ci left: 1.558816e-01	ci right 1.661172e-01	k: 3219	n:20000
KS ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
TOMM34   20000 perm   3 sec   (6472 perm/sec)   p_kst 5.775000e-02   p_cons 1.609500e-01   p_joint 2.142000e-01

Joint ci ratio: 4.292321e-02	ci left: 2.128426e-01	ci right 2.222122e-01	k: 6525	n:30000
Cons ci ratio: 5.181764e-02	ci left: 1.560328e-01	ci right 1.643664e-01	k: 4805	n:30000
KS ci ratio: 9.162750e-02	ci left: 5.485939e-02	ci right 6.016004e-02	k: 1724	n:30000
TOMM34   30000 perm   5 sec   (6208 perm/sec)   p_kst 5.746667e-02   p_cons 1.601667e-01   p_joint 2.175000e-01

Outputting figure to mutsig2_images.part000000000180/TOMM34.2_958_30000_0.057467_0.16017_0.2175.png
                gene_name: TOMM34
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 77 percent done.
TOMM70A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
Cons ci ratio: 1.090790e-02	ci left: 9.229644e-01	ci right 9.331845e-01	k: 9282	n:10000
KS ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
TOMM70A   10000 perm   1 sec   (6987 perm/sec)   p_kst 3.078000e-01   p_cons 9.282000e-01   p_joint 3.638000e-01

Outputting figure to mutsig2_images.part000000000180/TOMM70A.2_1875_10000_0.3078_0.9282_0.3638.png
                gene_name: TOMM70A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 79 percent done.
TP53I3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
TP53I3   10000 perm   1 sec   (7163 perm/sec)   p_kst 5.035000e-01   p_cons 1.997000e-01   p_joint 4.250000e-01

Outputting figure to mutsig2_images.part000000000180/TP53I3.2_1019_10000_0.5035_0.1997_0.425.png
                gene_name: TP53I3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 81 percent done.
TPCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
Cons ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
TPCN2   10000 perm   2 sec   (6239 perm/sec)   p_kst 2.111000e-01   p_cons 4.950000e-02   p_joint 7.330000e-02

Joint ci ratio: 6.336889e-02	ci left: 1.554867e-01	ci right 1.657121e-01	k: 3211	n:20000
Cons ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
KS ci ratio: 5.460164e-02	ci left: 1.992748e-01	ci right 2.105111e-01	k: 4097	n:20000
TPCN2   20000 perm   3 sec   (5791 perm/sec)   p_kst 2.048500e-01   p_cons 4.475000e-02   p_joint 1.605500e-01

Joint ci ratio: 8.361048e-02	ci left: 6.540533e-02	ci right 7.114529e-02	k: 2047	n:30000
Cons ci ratio: 1.047886e-01	ci left: 4.222667e-02	ci right 4.692870e-02	k: 1336	n:30000
KS ci ratio: 4.420268e-02	ci left: 2.030883e-01	ci right 2.123017e-01	k: 6230	n:30000
TPCN2   30000 perm   5 sec   (5612 perm/sec)   p_kst 2.076667e-01   p_cons 4.453333e-02   p_joint 6.823333e-02

Joint ci ratio: 8.197499e-02	ci left: 5.185404e-02	ci right 5.631098e-02	k: 2162	n:40000
Cons ci ratio: 9.125109e-02	ci left: 4.208413e-02	ci right 4.613239e-02	k: 1763	n:40000
KS ci ratio: 3.823425e-02	ci left: 2.041057e-01	ci right 2.120867e-01	k: 8323	n:40000
TPCN2   40000 perm   7 sec   (5422 perm/sec)   p_kst 2.080750e-01   p_cons 4.407500e-02   p_joint 5.405000e-02

Outputting figure to mutsig2_images.part000000000180/TPCN2.2_2359_40000_0.20808_0.044075_0.05405.png
                gene_name: TPCN2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 83 percent done.
TPD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
TPD52   10000 perm   1 sec   (6988 perm/sec)   p_kst 8.356000e-01   p_cons 6.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPD52.2_799_10000_0.8356_0.6817_1.png
                gene_name: TPD52
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
TPD52L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
TPD52L3   10000 perm   1 sec   (7900 perm/sec)   p_kst 5.211000e-01   p_cons 1.499000e-01   p_joint 1.781000e-01

Outputting figure to mutsig2_images.part000000000180/TPD52L3.2_511_10000_0.5211_0.1499_0.1781.png
                gene_name: TPD52L3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 87 percent done.
TPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
Cons ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
TPM2   10000 perm   1 sec   (7558 perm/sec)   p_kst 2.858000e-01   p_cons 3.106000e-01   p_joint 9.308000e-01

Outputting figure to mutsig2_images.part000000000180/TPM2.2_1058_10000_0.2858_0.3106_0.9308.png
                gene_name: TPM2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 89 percent done.
TPMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
KS ci ratio: 4.567292e-03	ci left: 9.842574e-01	ci right 9.888526e-01	k: 9867	n:10000
TPMT   10000 perm   1 sec   (7764 perm/sec)   p_kst 9.867000e-01   p_cons 6.431000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPMT.2_770_10000_0.9867_0.6431_1.png
                gene_name: TPMT
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TPPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
Cons ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
TPPP3   10000 perm   1 sec   (7835 perm/sec)   p_kst 1.130000e-01   p_cons 1.755000e-01   p_joint 3.613000e-01

Joint ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
Cons ci ratio: 5.975904e-02	ci left: 1.717327e-01	ci right 1.823614e-01	k: 3540	n:20000
KS ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
TPPP3   20000 perm   3 sec   (6869 perm/sec)   p_kst 1.124500e-01   p_cons 1.770000e-01   p_joint 1.243500e-01

Outputting figure to mutsig2_images.part000000000180/TPPP3.2_543_20000_0.11245_0.177_0.12435.png
                gene_name: TPPP3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 94 percent done.
TPRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
Cons ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
KS ci ratio: 3.153859e-02	ci left: 5.973472e-01	ci right 6.165905e-01	k: 6070	n:10000
TPRG1   10000 perm   1 sec   (7624 perm/sec)   p_kst 6.070000e-01   p_cons 9.881000e-01   p_joint 7.279000e-01

Outputting figure to mutsig2_images.part000000000180/TPRG1.2_848_10000_0.607_0.9881_0.7279.png
                gene_name: TPRG1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 96 percent done.
TPSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
Cons ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
KS ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
TPSD1   10000 perm   1 sec   (8093 perm/sec)   p_kst 1.751000e-01   p_cons 9.750000e-01   p_joint 7.389000e-01

Outputting figure to mutsig2_images.part000000000180/TPSD1.2_749_10000_0.1751_0.975_0.7389.png
                gene_name: TPSD1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
TPST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.791163e-02	ci left: 8.197466e-01	ci right 8.346623e-01	k: 8273	n:10000
KS ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
TPST2   10000 perm   1 sec   (7383 perm/sec)   p_kst 5.514000e-01   p_cons 8.273000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPST2.2_1150_10000_0.5514_0.8273_1.png
                gene_name: TPST2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000180
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 180 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 4422641: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000181> was used as the working directory.
Started at Wed Oct 24 18:19:06 2012
Results reported at Wed Oct 24 18:29:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000181.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000181.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 181  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000181.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    676.20 sec.
    Max Memory :      5291 MB
    Max Swap   :      7874 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
181
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 181
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 181: processing genes 16286 - 16375
Calculating significance of each gene.
Using projection method.
16286	TRAF3IP2	8.876945e-01
16287	TRAF3IP3	1
16288	TRAF4	8.953294e-01
16289	TRAF5	8.457612e-01
16290	TRAF6	1
16291	TRAF7	8.899970e-01
16292	TRAFD1	1
16293	TRAIP	6.360784e-01
16294	TRAK1	6.014996e-01
16295	TRAK2	7.116827e-01
16296	TRAM1	1.337718e-01
16297	TRAM1L1	7.946893e-02
16298	TRAM2	5.117043e-02
16299	TRANK1	9.999919e-01
16300	TRAP1	1
16301	TRAPPC1	1
16302	TRAPPC10	9.696358e-01
16303	TRAPPC2	1
16304	TRAPPC2L	5.729469e-01
16305	TRAPPC3	1
16306	TRAPPC4	1
16307	TRAPPC5	3.303506e-01
16308	TRAPPC6A	2.113421e-01
16309	TRAPPC6B	1.064704e-01
16310	TRAPPC9	1
16311	TRAT1	1.171047e-01
16312	TRDMT1	2.646631e-01
16313	TRDN	1.231089e-02
16314	TREH	9.035708e-01
16315	TREM1	4.534285e-01
16316	TREM2	7.215055e-01
16317	TREML1	2.176200e-01
16318	TREML2	8.240123e-01
16319	TREML4	6.984472e-02
16320	TRERF1	1
16321	TREX1	9.132427e-01
16322	TREX2	1
16323	TRH	8.676169e-01
16324	TRHDE	4.248473e-02
16325	TRHR	1
16326	TRIAP1	1
16327	TRIB1	4.563034e-01
16328	TRIB2	5.911247e-01
16329	TRIB3	1
16330	TRIL	1
16331	TRIM10	9.342367e-01
16332	TRIM11	6.775659e-01
16333	TRIM13	9.010023e-01
16334	TRIM14	1
16335	TRIM15	3.128183e-01
16336	TRIM16	2.922425e-01
16337	TRIM16L	9.201224e-01
16338	TRIM17	7.906955e-01
16339	TRIM2	6.081262e-01
16340	TRIM21	1
16341	TRIM22	2.136887e-01
16342	TRIM23	6.839000e-01
16343	TRIM24	9.622337e-01
16344	TRIM25	8.383975e-01
16345	TRIM26	9.235870e-01
16346	TRIM27	5.268068e-01
16347	TRIM28	9.261396e-01
16348	TRIM29	9.042821e-03
16349	TRIM3	1
16350	TRIM31	7.635905e-01
16351	TRIM32	9.834642e-01
16352	TRIM33	7.382251e-01
16353	TRIM34	1
16354	TRIM35	7.055076e-01
16355	TRIM36	1
16356	TRIM37	9.298252e-01
16357	TRIM38	1
16358	TRIM39	4.731331e-01
16359	TRIM4	4.578801e-01
16360	TRIM40	6.296773e-01
16361	TRIM41	9.544220e-01
16362	TRIM42	7.939966e-01
16363	TRIM43	3.070968e-01
16364	TRIM44	5.814206e-01
16365	TRIM45	9.083126e-01
16366	TRIM46	8.137126e-01
16367	TRIM47	6.503595e-01
16368	TRIM48	2.322063e-03
16369	TRIM49	2.306611e-02
16370	TRIM5	8.621650e-01
16371	TRIM50	1
16372	TRIM52	2.882408e-01
16373	TRIM54	5.274221e-01
16374	TRIM55	5.626913e-01
16375	TRIM56	9.123699e-01
Done

Running MutSig 2:
Scatter job 181: processing genes 16286 - 16375
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRHDE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.682605e-02	ci left: 2.473694e-01	ci right 2.645729e-01	k: 2559	n:10000
Cons ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
KS ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
TRHDE   10000 perm   2 sec   (4381 perm/sec)   p_kst 3.327000e-01   p_cons 8.970000e-02   p_joint 2.559000e-01

Joint ci ratio: 6.016202e-02	ci left: 1.698059e-01	ci right 1.803887e-01	k: 3501	n:20000
Cons ci ratio: 8.500824e-02	ci left: 9.200023e-02	ci right 1.002176e-01	k: 1921	n:20000
KS ci ratio: 4.076656e-02	ci left: 3.096583e-01	ci right 3.225952e-01	k: 6322	n:20000
TRHDE   20000 perm   7 sec   (3006 perm/sec)   p_kst 3.161000e-01   p_cons 9.605000e-02   p_joint 1.750500e-01

Outputting figure to mutsig2_images.part000000000181/TRHDE.19_3151_20000_0.3161_0.09605_0.17505.png
                gene_name: TRHDE
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 2 percent done.
TRIM42
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
Cons ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
KS ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
TRIM42   10000 perm   2 sec   (4669 perm/sec)   p_kst 6.497000e-01   p_cons 2.870000e-01   p_joint 4.293000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM42.13_2192_10000_0.6497_0.287_0.4293.png
                gene_name: TRIM42
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 3 percent done.
TRIM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
TRIM29   10000 perm   2 sec   (4672 perm/sec)   p_kst 2.391000e-01   p_cons 4.419000e-01   p_joint 3.487000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM29.12_1803_10000_0.2391_0.4419_0.3487.png
                gene_name: TRIM29
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 5 percent done.
TRIM48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
KS ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
TRIM48   10000 perm   2 sec   (5315 perm/sec)   p_kst 8.764000e-01   p_cons 1.740000e-02   p_joint 1.427000e-01

Joint ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
Cons ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
KS ci ratio: 9.034226e-03	ci left: 8.998333e-01	ci right 9.080488e-01	k: 18080	n:20000
TRIM48   20000 perm   4 sec   (4984 perm/sec)   p_kst 9.040000e-01   p_cons 1.595000e-02   p_joint 8.400000e-02

Joint ci ratio: 7.574083e-02	ci left: 7.885373e-02	ci right 8.509417e-02	k: 2458	n:30000
Cons ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
KS ci ratio: 7.419846e-03	ci left: 8.995613e-01	ci right 9.062937e-01	k: 27089	n:30000
TRIM48   30000 perm   6 sec   (4886 perm/sec)   p_kst 9.029667e-01   p_cons 1.560000e-02   p_joint 8.193333e-02

Joint ci ratio: 6.870850e-02	ci left: 7.265866e-02	ci right 7.785320e-02	k: 3009	n:40000
Cons ci ratio: 1.540725e-01	ci left: 1.469689e-02	ci right 1.717411e-02	k: 636	n:40000
KS ci ratio: 6.391338e-03	ci left: 9.009698e-01	ci right 9.067714e-01	k: 36156	n:40000
TRIM48   40000 perm   8 sec   (4790 perm/sec)   p_kst 9.039000e-01   p_cons 1.590000e-02   p_joint 7.522500e-02

Joint ci ratio: 5.907284e-02	ci left: 7.854399e-02	ci right 8.334479e-02	k: 4046	n:50000
Cons ci ratio: 1.316609e-01	ci left: 1.627197e-02	ci right 1.858454e-02	k: 870	n:50000
KS ci ratio: 5.772257e-03	ci left: 8.995629e-01	ci right 9.047903e-01	k: 45110	n:50000
TRIM48   50000 perm   11 sec   (4700 perm/sec)   p_kst 9.022000e-01   p_cons 1.740000e-02   p_joint 8.092000e-02

Joint ci ratio: 5.467922e-02	ci left: 7.673854e-02	ci right 8.106896e-02	k: 4733	n:60000
Cons ci ratio: 1.194474e-01	ci left: 1.657909e-02	ci right 1.870127e-02	k: 1057	n:60000
KS ci ratio: 5.266783e-03	ci left: 8.998796e-01	ci right 9.046481e-01	k: 54137	n:60000
TRIM48   60000 perm   13 sec   (4607 perm/sec)   p_kst 9.022833e-01   p_cons 1.761667e-02   p_joint 7.888333e-02

Joint ci ratio: 5.196298e-02	ci left: 7.322868e-02	ci right 7.714948e-02	k: 5262	n:70000
Cons ci ratio: 1.113857e-01	ci left: 1.641647e-02	ci right 1.836668e-02	k: 1216	n:70000
KS ci ratio: 4.874413e-03	ci left: 9.001199e-01	ci right 9.045324e-01	k: 63164	n:70000
TRIM48   70000 perm   16 sec   (4326 perm/sec)   p_kst 9.023429e-01   p_cons 1.737143e-02   p_joint 7.517143e-02

Joint ci ratio: 4.763279e-02	ci left: 7.618787e-02	ci right 7.991780e-02	k: 6243	n:80000
Cons ci ratio: 1.038828e-01	ci left: 1.657828e-02	ci right 1.840695e-02	k: 1398	n:80000
KS ci ratio: 4.575859e-03	ci left: 8.996287e-01	ci right 9.037671e-01	k: 72137	n:80000
TRIM48   80000 perm   19 sec   (4134 perm/sec)   p_kst 9.017125e-01   p_cons 1.747500e-02   p_joint 7.803750e-02

Joint ci ratio: 5.729182e-02	ci left: 4.802611e-02	ci right 5.086969e-02	k: 4449	n:90000
Cons ci ratio: 1.022545e-01	ci left: 1.524447e-02	ci right 1.689804e-02	k: 1445	n:90000
KS ci ratio: 4.331731e-03	ci left: 8.990191e-01	ci right 9.029328e-01	k: 81089	n:90000
TRIM48   90000 perm   22 sec   (4045 perm/sec)   p_kst 9.009889e-01   p_cons 1.605556e-02   p_joint 4.943333e-02

Joint ci ratio: 5.484633e-02	ci left: 4.726549e-02	ci right 4.994077e-02	k: 4859	n:100000
Cons ci ratio: 9.657032e-02	ci left: 1.542660e-02	ci right 1.700164e-02	k: 1620	n:100000
KS ci ratio: 4.106407e-03	ci left: 8.992533e-01	ci right 9.029634e-01	k: 90112	n:100000
TRIM48   100000 perm   26 sec   (3890 perm/sec)   p_kst 9.011200e-01   p_cons 1.620000e-02   p_joint 4.859000e-02

Outputting figure to mutsig2_images.part000000000181/TRIM48.9_695_100000_0.90112_0.0162_0.04859.png
                gene_name: TRIM48
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 6 percent done.
TRAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
TRAK1   10000 perm   3 sec   (3568 perm/sec)   p_kst 8.578000e-01   p_cons 1.764000e-01   p_joint 6.064000e-01

Outputting figure to mutsig2_images.part000000000181/TRAK1.8_3314_10000_0.8578_0.1764_0.6064.png
                gene_name: TRAK1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
TRDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
KS ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
TRDN   10000 perm   3 sec   (3800 perm/sec)   p_kst 6.496000e-01   p_cons 4.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRDN.8_2354_10000_0.6496_0.4411_1.png
                gene_name: TRDN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
TRAF3IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
Cons ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
KS ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
TRAF3IP3   10000 perm   2 sec   (5586 perm/sec)   p_kst 2.117000e-01   p_cons 2.645000e-01   p_joint 2.394000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF3IP3.6_1716_10000_0.2117_0.2645_0.2394.png
                gene_name: TRAF3IP3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 11 percent done.
TRAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
Cons ci ratio: 1.724346e-02	ci left: 8.305285e-01	ci right 8.450741e-01	k: 8379	n:10000
KS ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
TRAK2   10000 perm   2 sec   (4613 perm/sec)   p_kst 4.308000e-01   p_cons 8.379000e-01   p_joint 6.104000e-01

Outputting figure to mutsig2_images.part000000000181/TRAK2.6_2805_10000_0.4308_0.8379_0.6104.png
                gene_name: TRAK2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 12 percent done.
TRANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
Cons ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
TRANK1   10000 perm   3 sec   (3421 perm/sec)   p_kst 4.382000e-01   p_cons 5.177000e-01   p_joint 5.478000e-01

Outputting figure to mutsig2_images.part000000000181/TRANK1.6_8870_10000_0.4382_0.5177_0.5478.png
                gene_name: TRANK1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 14 percent done.
TRAPPC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
Cons ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
TRAPPC9   10000 perm   2 sec   (5041 perm/sec)   p_kst 2.918000e-01   p_cons 2.471000e-01   p_joint 4.779000e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC9.6_3833_10000_0.2918_0.2471_0.4779.png
                gene_name: TRAPPC9
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 16 percent done.
TRIM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.132144e-02	ci left: 7.633448e-01	ci right 7.798966e-01	k: 7717	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
TRIM10   10000 perm   2 sec   (5606 perm/sec)   p_kst 5.578000e-01   p_cons 9.192000e-01   p_joint 7.717000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM10.6_1562_10000_0.5578_0.9192_0.7717.png
                gene_name: TRIM10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 17 percent done.
TRAM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
Cons ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
KS ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
TRAM1L1   10000 perm   2 sec   (5936 perm/sec)   p_kst 4.523000e-01   p_cons 2.470000e-02   p_joint 1.285000e-01

Joint ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
Cons ci ratio: 1.689838e-01	ci left: 2.398245e-02	ci right 2.845673e-02	k: 523	n:20000
KS ci ratio: 3.143994e-02	ci left: 4.304097e-01	ci right 4.442085e-01	k: 8746	n:20000
TRAM1L1   20000 perm   4 sec   (5296 perm/sec)   p_kst 4.373000e-01   p_cons 2.615000e-02   p_joint 9.615000e-02

Joint ci ratio: 6.944937e-02	ci left: 9.265620e-02	ci right 9.935560e-02	k: 2879	n:30000
Cons ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
KS ci ratio: 2.566266e-02	ci left: 4.318428e-01	ci right 4.431027e-01	k: 13124	n:30000
TRAM1L1   30000 perm   6 sec   (5007 perm/sec)   p_kst 4.374667e-01   p_cons 2.233333e-02   p_joint 9.596667e-02

Joint ci ratio: 5.985245e-02	ci left: 9.394384e-02	ci right 9.976483e-02	k: 3873	n:40000
Cons ci ratio: 1.281706e-01	ci left: 2.138366e-02	ci right 2.433617e-02	k: 913	n:40000
KS ci ratio: 2.227420e-02	ci left: 4.315072e-01	ci right 4.412520e-01	k: 17455	n:40000
TRAM1L1   40000 perm   8 sec   (4825 perm/sec)   p_kst 4.363750e-01   p_cons 2.282500e-02   p_joint 9.682500e-02

Joint ci ratio: 5.731856e-02	ci left: 8.308288e-02	ci right 8.800536e-02	k: 4276	n:50000
Cons ci ratio: 1.142055e-01	ci left: 2.170381e-02	ci right 2.435197e-02	k: 1150	n:50000
KS ci ratio: 1.996236e-02	ci left: 4.310480e-01	ci right 4.397595e-01	k: 21770	n:50000
TRAM1L1   50000 perm   11 sec   (4689 perm/sec)   p_kst 4.354000e-01   p_cons 2.300000e-02   p_joint 8.552000e-02

Joint ci ratio: 5.031066e-02	ci left: 8.956697e-02	ci right 9.420592e-02	k: 5512	n:60000
Cons ci ratio: 9.674588e-02	ci left: 2.534334e-02	ci right 2.793605e-02	k: 1597	n:60000
KS ci ratio: 1.821020e-02	ci left: 4.317773e-01	ci right 4.397290e-01	k: 26145	n:60000
TRAM1L1   60000 perm   13 sec   (4580 perm/sec)   p_kst 4.357500e-01   p_cons 2.661667e-02   p_joint 9.186667e-02

Outputting figure to mutsig2_images.part000000000181/TRAM1L1.5_1114_60000_0.43575_0.026617_0.091867.png
                gene_name: TRAM1L1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 19 percent done.
TRAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
KS ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
TRAM2   10000 perm   2 sec   (5901 perm/sec)   p_kst 8.468000e-01   p_cons 6.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAM2.5_1157_10000_0.8468_0.6026_1.png
                gene_name: TRAM2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
TREML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
KS ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
TREML2   10000 perm   2 sec   (6101 perm/sec)   p_kst 9.127000e-01   p_cons 4.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TREML2.5_986_10000_0.9127_0.4501_1.png
                gene_name: TREML2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
TRIM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
Cons ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
KS ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
TRIM15   10000 perm   2 sec   (5959 perm/sec)   p_kst 3.417000e-01   p_cons 7.040000e-01   p_joint 5.211000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM15.5_1426_10000_0.3417_0.704_0.5211.png
                gene_name: TRIM15
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 23 percent done.
TRIM16
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
Cons ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
KS ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
TRIM16   10000 perm   2 sec   (6015 perm/sec)   p_kst 4.624000e-01   p_cons 3.490000e-01   p_joint 8.980000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM16.3_1719_10000_0.4624_0.349_0.898.png
                gene_name: TRIM16
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 25 percent done.
TRIM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
TRIM33   10000 perm   2 sec   (5174 perm/sec)   p_kst 4.968000e-01   p_cons 5.389000e-01   p_joint 5.981000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM33.5_3464_10000_0.4968_0.5389_0.5981.png
                gene_name: TRIM33
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 27 percent done.
TRIM46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
TRIM46   10000 perm   2 sec   (5340 perm/sec)   p_kst 2.535000e-01   p_cons 2.031000e-01   p_joint 2.466000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM46.5_2320_10000_0.2535_0.2031_0.2466.png
                gene_name: TRIM46
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 28 percent done.
TRIM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
KS ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
TRIM49   10000 perm   2 sec   (5720 perm/sec)   p_kst 7.965000e-01   p_cons 8.737000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM49.5_1383_10000_0.7965_0.8737_1.png
                gene_name: TRIM49
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
TRAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
TRAF6   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.170000e-01   p_cons 3.270000e-02   p_joint 3.420000e-02

Joint ci ratio: 1.195665e-01	ci left: 4.794292e-02	ci right 5.408845e-02	k: 1019	n:20000
Cons ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
KS ci ratio: 7.752260e-02	ci left: 1.089387e-01	ci right 1.177741e-01	k: 2266	n:20000
TRAF6   20000 perm   4 sec   (5259 perm/sec)   p_kst 1.133000e-01   p_cons 2.925000e-02   p_joint 5.095000e-02

Joint ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
Cons ci ratio: 1.327757e-01	ci left: 2.635586e-02	ci right 3.013624e-02	k: 846	n:30000
KS ci ratio: 6.336565e-02	ci left: 1.095370e-01	ci right 1.167381e-01	k: 3393	n:30000
TRAF6   30000 perm   6 sec   (5032 perm/sec)   p_kst 1.131000e-01   p_cons 2.820000e-02   p_joint 4.940000e-02

Joint ci ratio: 8.779239e-02	ci left: 4.538698e-02	ci right 4.957903e-02	k: 1898	n:40000
Cons ci ratio: 1.156923e-01	ci left: 2.628365e-02	ci right 2.953537e-02	k: 1115	n:40000
KS ci ratio: 5.488555e-02	ci left: 1.099872e-01	ci right 1.162191e-01	k: 4523	n:40000
TRAF6   40000 perm   8 sec   (4890 perm/sec)   p_kst 1.130750e-01   p_cons 2.787500e-02   p_joint 4.745000e-02

Joint ci ratio: 7.855448e-02	ci left: 4.557340e-02	ci right 4.931937e-02	k: 2371	n:50000
Cons ci ratio: 1.035932e-01	ci left: 2.639596e-02	ci right 2.929920e-02	k: 1391	n:50000
KS ci ratio: 4.918443e-02	ci left: 1.099407e-01	ci right 1.155043e-01	k: 5635	n:50000
TRAF6   50000 perm   10 sec   (4772 perm/sec)   p_kst 1.127000e-01   p_cons 2.782000e-02   p_joint 4.742000e-02

Joint ci ratio: 6.692709e-02	ci left: 5.227040e-02	ci right 5.590622e-02	k: 3244	n:60000
Cons ci ratio: 9.457901e-02	ci left: 2.651538e-02	ci right 2.916389e-02	k: 1669	n:60000
KS ci ratio: 4.504636e-02	ci left: 1.095366e-01	ci right 1.146010e-01	k: 6723	n:60000
TRAF6   60000 perm   13 sec   (4662 perm/sec)   p_kst 1.120500e-01   p_cons 2.781667e-02   p_joint 5.406667e-02

Outputting figure to mutsig2_images.part000000000181/TRAF6.4_1593_60000_0.11205_0.027817_0.054067.png
                gene_name: TRAF6
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 31 percent done.
TRAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
TRAM1   10000 perm   2 sec   (6506 perm/sec)   p_kst 7.961000e-01   p_cons 3.174000e-01   p_joint 7.632000e-01

Outputting figure to mutsig2_images.part000000000181/TRAM1.4_1169_10000_0.7961_0.3174_0.7632.png
                gene_name: TRAM1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
TRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.113523e-03	ci left: 9.959557e-01	ci right 9.981386e-01	k: 9972	n:10000
KS ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
TRHR   10000 perm   2 sec   (6127 perm/sec)   p_kst 7.578000e-01   p_cons 9.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRHR.4_1205_10000_0.7578_0.9972_1.png
                gene_name: TRHR
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
TRIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
Cons ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
KS ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
TRIM2   10000 perm   2 sec   (5622 perm/sec)   p_kst 2.685000e-01   p_cons 8.739000e-01   p_joint 6.415000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM2.4_2364_10000_0.2685_0.8739_0.6415.png
                gene_name: TRIM2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 36 percent done.
TRIM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
TRIM22   10000 perm   2 sec   (5962 perm/sec)   p_kst 7.331000e-01   p_cons 6.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM22.4_1525_10000_0.7331_0.6331_1.png
                gene_name: TRIM22
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
TRIM27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
TRIM27   10000 perm   2 sec   (6173 perm/sec)   p_kst 8.150000e-02   p_cons 8.600000e-03   p_joint 1.740000e-02

Joint ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
Cons ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
KS ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
TRIM27   20000 perm   4 sec   (5510 perm/sec)   p_kst 8.165000e-02   p_cons 7.250000e-03   p_joint 6.500000e-03

Joint ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
Cons ci ratio: 2.670038e-01	ci left: 6.181212e-03	ci right 8.116082e-03	k: 213	n:30000
KS ci ratio: 7.574083e-02	ci left: 7.885373e-02	ci right 8.509417e-02	k: 2458	n:30000
TRIM27   30000 perm   6 sec   (5225 perm/sec)   p_kst 8.193333e-02   p_cons 7.100000e-03   p_joint 5.133333e-03

Joint ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
Cons ci ratio: 2.313692e-01	ci left: 6.300632e-03	ci right 7.972121e-03	k: 284	n:40000
KS ci ratio: 6.620787e-02	ci left: 7.790107e-02	ci right 8.326001e-02	k: 3222	n:40000
TRIM27   40000 perm   8 sec   (5068 perm/sec)   p_kst 8.055000e-02   p_cons 7.100000e-03   p_joint 8.025000e-03

Joint ci ratio: 2.033106e-01	ci left: 6.629513e-03	ci right 8.148522e-03	k: 368	n:50000
Cons ci ratio: 2.061436e-01	ci left: 6.439702e-03	ci right 7.938370e-03	k: 358	n:50000
KS ci ratio: 5.932039e-02	ci left: 7.793240e-02	ci right 8.271646e-02	k: 4015	n:50000
TRIM27   50000 perm   10 sec   (4960 perm/sec)   p_kst 8.030000e-02   p_cons 7.160000e-03   p_joint 7.360000e-03

Joint ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
Cons ci ratio: 1.859779e-01	ci left: 6.666223e-03	ci right 8.048738e-03	k: 440	n:60000
KS ci ratio: 5.475460e-02	ci left: 7.654105e-02	ci right 8.086647e-02	k: 4721	n:60000
TRIM27   60000 perm   12 sec   (4878 perm/sec)   p_kst 7.868333e-02   p_cons 7.333333e-03   p_joint 6.600000e-03

Joint ci ratio: 1.309328e-01	ci left: 1.181447e-02	ci right 1.348344e-02	k: 884	n:70000
Cons ci ratio: 1.724357e-01	ci left: 6.696398e-03	ci right 7.973522e-03	k: 512	n:70000
KS ci ratio: 5.076300e-02	ci left: 7.650381e-02	ci right 8.050264e-02	k: 5494	n:70000
TRIM27   70000 perm   15 sec   (4784 perm/sec)   p_kst 7.848571e-02   p_cons 7.314286e-03   p_joint 1.262857e-02

Joint ci ratio: 1.076654e-01	ci left: 1.542169e-02	ci right 1.718864e-02	k: 1303	n:80000
Cons ci ratio: 1.640391e-01	ci left: 6.505885e-03	ci right 7.680287e-03	k: 566	n:80000
KS ci ratio: 4.748038e-02	ci left: 7.664532e-02	ci right 8.038532e-02	k: 6280	n:80000
TRIM27   80000 perm   17 sec   (4683 perm/sec)   p_kst 7.850000e-02   p_cons 7.075000e-03   p_joint 1.628750e-02

Joint ci ratio: 1.366877e-01	ci left: 8.436246e-03	ci right 9.684594e-03	k: 814	n:90000
Cons ci ratio: 1.451988e-01	ci left: 7.449760e-03	ci right 8.626725e-03	k: 722	n:90000
KS ci ratio: 4.483428e-02	ci left: 7.653096e-02	ci right 8.005183e-02	k: 7045	n:90000
TRIM27   90000 perm   20 sec   (4585 perm/sec)   p_kst 7.827778e-02   p_cons 8.022222e-03   p_joint 9.044444e-03

Joint ci ratio: 1.341205e-01	ci left: 7.901633e-03	ci right 9.047151e-03	k: 846	n:100000
Cons ci ratio: 1.373462e-01	ci left: 7.524775e-03	ci right 8.644040e-03	k: 807	n:100000
KS ci ratio: 4.258636e-02	ci left: 7.644416e-02	ci right 7.978036e-02	k: 7810	n:100000
TRIM27   100000 perm   22 sec   (4491 perm/sec)   p_kst 7.810000e-02   p_cons 8.070000e-03   p_joint 8.460000e-03

Joint ci ratio: 1.442056e-01	ci left: 6.191344e-03	ci right 7.162213e-03	k: 733	n:110000
Cons ci ratio: 1.303497e-01	ci left: 7.622739e-03	ci right 8.694345e-03	k: 896	n:110000
KS ci ratio: 4.057660e-02	ci left: 7.661997e-02	ci right 7.980231e-02	k: 8602	n:110000
TRIM27   110000 perm   25 sec   (4406 perm/sec)   p_kst 7.820000e-02   p_cons 8.145455e-03   p_joint 6.663636e-03

Joint ci ratio: 1.065264e-01	ci left: 1.056357e-02	ci right 1.176023e-02	k: 1338	n:120000
Cons ci ratio: 1.254186e-01	ci left: 7.568305e-03	ci right 8.589016e-03	k: 968	n:120000
KS ci ratio: 3.895301e-02	ci left: 7.630705e-02	ci right 7.934672e-02	k: 9338	n:120000
TRIM27   120000 perm   28 sec   (4326 perm/sec)   p_kst 7.781667e-02   p_cons 8.066667e-03   p_joint 1.115000e-02

Joint ci ratio: 1.029804e-01	ci left: 1.045509e-02	ci right 1.159765e-02	k: 1432	n:130000
Cons ci ratio: 1.207741e-01	ci left: 7.552741e-03	ci right 8.530933e-03	k: 1044	n:130000
KS ci ratio: 3.740531e-02	ci left: 7.644104e-02	ci right 7.936244e-02	k: 10126	n:130000
TRIM27   130000 perm   31 sec   (4249 perm/sec)   p_kst 7.789231e-02   p_cons 8.030769e-03   p_joint 1.101538e-02

Joint ci ratio: 1.099350e-01	ci left: 8.504970e-03	ci right 9.501240e-03	k: 1259	n:140000
Cons ci ratio: 1.159343e-01	ci left: 7.630174e-03	ci right 8.576083e-03	k: 1133	n:140000
KS ci ratio: 3.599101e-02	ci left: 7.670669e-02	ci right 7.952510e-02	k: 10935	n:140000
TRIM27   140000 perm   34 sec   (4177 perm/sec)   p_kst 7.810714e-02   p_cons 8.092857e-03   p_joint 8.992857e-03

Joint ci ratio: 1.177040e-01	ci left: 6.907772e-03	ci right 7.778101e-03	k: 1100	n:150000
Cons ci ratio: 1.116793e-01	ci left: 7.691478e-03	ci right 8.607687e-03	k: 1221	n:150000
KS ci ratio: 3.477569e-02	ci left: 7.673370e-02	ci right 7.945597e-02	k: 11713	n:150000
TRIM27   150000 perm   36 sec   (4110 perm/sec)   p_kst 7.808667e-02   p_cons 8.140000e-03   p_joint 7.333333e-03

Joint ci ratio: 1.122181e-01	ci left: 7.143822e-03	ci right 7.999167e-03	k: 1210	n:160000
Cons ci ratio: 1.083624e-01	ci left: 7.672686e-03	ci right 8.557777e-03	k: 1297	n:160000
KS ci ratio: 3.315877e-02	ci left: 7.899771e-02	ci right 8.166752e-02	k: 12852	n:160000
TRIM27   160000 perm   40 sec   (4047 perm/sec)   p_kst 8.032500e-02   p_cons 8.106250e-03   p_joint 7.562500e-03

Joint ci ratio: 1.141578e-01	ci left: 6.494840e-03	ci right 7.286823e-03	k: 1170	n:170000
Cons ci ratio: 1.053245e-01	ci left: 7.656461e-03	ci right 8.513384e-03	k: 1373	n:170000
KS ci ratio: 3.217042e-02	ci left: 7.902991e-02	ci right 8.161971e-02	k: 13654	n:170000
TRIM27   170000 perm   43 sec   (3986 perm/sec)   p_kst 8.031765e-02   p_cons 8.076471e-03   p_joint 6.882353e-03

Joint ci ratio: 1.167147e-01	ci left: 5.864145e-03	ci right 6.596339e-03	k: 1120	n:180000
Cons ci ratio: 1.027430e-01	ci left: 7.609862e-03	ci right 8.439434e-03	k: 1443	n:180000
KS ci ratio: 3.122675e-02	ci left: 7.924161e-02	ci right 8.176081e-02	k: 14489	n:180000
TRIM27   180000 perm   46 sec   (3926 perm/sec)   p_kst 8.049444e-02   p_cons 8.016667e-03   p_joint 6.222222e-03

Joint ci ratio: 1.138575e-01	ci left: 5.846852e-03	ci right 6.557814e-03	k: 1177	n:190000
Cons ci ratio: 1.004093e-01	ci left: 7.558135e-03	ci right 8.362249e-03	k: 1511	n:190000
KS ci ratio: 3.043394e-02	ci left: 7.908183e-02	ci right 8.153099e-02	k: 15257	n:190000
TRIM27   190000 perm   49 sec   (3866 perm/sec)   p_kst 8.030000e-02   p_cons 7.952632e-03   p_joint 6.194737e-03

Joint ci ratio: 1.107949e-01	ci left: 5.875243e-03	ci right 6.569185e-03	k: 1243	n:200000
Cons ci ratio: 9.739244e-02	ci left: 7.643496e-03	ci right 8.430863e-03	k: 1606	n:200000
KS ci ratio: 2.964633e-02	ci left: 7.919701e-02	ci right 8.158517e-02	k: 16077	n:200000
TRIM27   200000 perm   52 sec   (3811 perm/sec)   p_kst 8.038500e-02   p_cons 8.030000e-03   p_joint 6.215000e-03

Joint ci ratio: 8.714732e-02	ci left: 9.126787e-03	ci right 9.963025e-03	k: 2003	n:210000
Cons ci ratio: 9.471623e-02	ci left: 7.707104e-03	ci right 8.477996e-03	k: 1698	n:210000
KS ci ratio: 2.920160e-02	ci left: 7.787342e-02	ci right 8.018584e-02	k: 16595	n:210000
TRIM27   210000 perm   56 sec   (3758 perm/sec)   p_kst 7.902381e-02   p_cons 8.085714e-03   p_joint 9.538095e-03

Outputting figure to mutsig2_images.part000000000181/TRIM27.4_1574_210000_0.079024_0.0080857_0.0095381.png
                gene_name: TRIM27
               theta_stop: 0.095 
                    nperm: 210000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.0081 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0085 
                  p_joint: 0.0095 
     ci_joint_bounds_left: 0.0091 
    ci_joint_bounds_right: 0.0100 

Current progress: 39 percent done.
TRIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
Cons ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
KS ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
TRIM3   10000 perm   2 sec   (5608 perm/sec)   p_kst 2.561000e-01   p_cons 6.908000e-01   p_joint 4.034000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM3.4_2279_10000_0.2561_0.6908_0.4034.png
                gene_name: TRIM3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 41 percent done.
TRIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
Cons ci ratio: 2.953145e-02	ci left: 6.283912e-01	ci right 6.473284e-01	k: 6379	n:10000
KS ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
TRIM4   10000 perm   2 sec   (6255 perm/sec)   p_kst 1.473000e-01   p_cons 6.379000e-01   p_joint 2.788000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM4.4_1531_10000_0.1473_0.6379_0.2788.png
                gene_name: TRIM4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 42 percent done.
TRIM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
Cons ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
KS ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
TRIM43   10000 perm   2 sec   (6330 perm/sec)   p_kst 3.566000e-01   p_cons 1.773000e-01   p_joint 1.924000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM43.4_1365_10000_0.3566_0.1773_0.1924.png
                gene_name: TRIM43
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 44 percent done.
TRAPPC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
TRAPPC10   10000 perm   2 sec   (5397 perm/sec)   p_kst 2.269000e-01   p_cons 5.420000e-01   p_joint 3.460000e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC10.3_3872_10000_0.2269_0.542_0.346.png
                gene_name: TRAPPC10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 45 percent done.
TRAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
KS ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
TRAT1   10000 perm   1 sec   (6806 perm/sec)   p_kst 6.855000e-01   p_cons 8.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAT1.3_585_10000_0.6855_0.822_1.png
                gene_name: TRAT1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
TRDMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
KS ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
TRDMT1   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.752000e-01   p_cons 2.331000e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000181/TRDMT1.3_1220_10000_0.3752_0.2331_0.2467.png
                gene_name: TRDMT1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 48 percent done.
TREML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
Cons ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
TREML1   10000 perm   2 sec   (6346 perm/sec)   p_kst 2.391000e-01   p_cons 6.162000e-01   p_joint 4.062000e-01

Outputting figure to mutsig2_images.part000000000181/TREML1.3_958_10000_0.2391_0.6162_0.4062.png
                gene_name: TREML1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 50 percent done.
TREML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.797670e-02	ci left: 6.531359e-01	ci right 6.717694e-01	k: 6625	n:10000
KS ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
TREML4   10000 perm   2 sec   (6500 perm/sec)   p_kst 5.281000e-01   p_cons 6.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TREML4.3_623_10000_0.5281_0.6625_1.png
                gene_name: TREML4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
TRERF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
Cons ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
KS ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
TRERF1   10000 perm   2 sec   (5269 perm/sec)   p_kst 6.848000e-01   p_cons 3.906000e-01   p_joint 6.136000e-01

Outputting figure to mutsig2_images.part000000000181/TRERF1.3_3659_10000_0.6848_0.3906_0.6136.png
                gene_name: TRERF1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 53 percent done.
TRIM36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
TRIM36   10000 perm   2 sec   (5797 perm/sec)   p_kst 7.767000e-01   p_cons 2.948000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM36.3_2478_10000_0.7767_0.2948_0.6126.png
                gene_name: TRIM36
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
TRIM37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749511e-01	ci left: 4.360497e-02	ci right 5.206094e-02	k: 477	n:10000
Cons ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
KS ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
TRIM37   10000 perm   2 sec   (5486 perm/sec)   p_kst 3.120000e-02   p_cons 6.086000e-01   p_joint 4.770000e-02

Joint ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
Cons ci ratio: 2.236782e-02	ci left: 5.987868e-01	ci right 6.123825e-01	k: 12112	n:20000
KS ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
TRIM37   20000 perm   4 sec   (4931 perm/sec)   p_kst 3.025000e-02   p_cons 6.056000e-01   p_joint 3.750000e-02

Joint ci ratio: 1.191303e-01	ci left: 3.275459e-02	ci right 3.693612e-02	k: 1044	n:30000
Cons ci ratio: 1.828396e-02	ci left: 5.995084e-01	ci right 6.106045e-01	k: 18152	n:30000
KS ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
TRIM37   30000 perm   6 sec   (4719 perm/sec)   p_kst 2.930000e-02   p_cons 6.050667e-01   p_joint 3.480000e-02

Joint ci ratio: 1.012776e-01	ci left: 3.426880e-02	ci right 3.794894e-02	k: 1443	n:40000
Cons ci ratio: 1.593548e-02	ci left: 5.972084e-01	ci right 6.068268e-01	k: 24081	n:40000
KS ci ratio: 1.152680e-01	ci left: 2.647803e-02	ci right 2.974096e-02	k: 1123	n:40000
TRIM37   40000 perm   9 sec   (4575 perm/sec)   p_kst 2.807500e-02   p_cons 6.020250e-01   p_joint 3.607500e-02

Joint ci ratio: 8.991594e-02	ci left: 3.497104e-02	ci right 3.828304e-02	k: 1830	n:50000
Cons ci ratio: 1.426525e-02	ci left: 5.973131e-01	ci right 6.059151e-01	k: 30081	n:50000
KS ci ratio: 1.031368e-01	ci left: 2.662992e-02	ci right 2.954521e-02	k: 1403	n:50000
TRIM37   50000 perm   11 sec   (4456 perm/sec)   p_kst 2.806000e-02   p_cons 6.016200e-01   p_joint 3.660000e-02

Joint ci ratio: 7.310139e-02	ci left: 4.405906e-02	ci right 4.741839e-02	k: 2743	n:60000
Cons ci ratio: 1.299894e-02	ci left: 5.985543e-01	ci right 6.064025e-01	k: 36149	n:60000
KS ci ratio: 9.334997e-02	ci left: 2.721566e-02	ci right 2.989686e-02	k: 1712	n:60000
TRIM37   60000 perm   14 sec   (4364 perm/sec)   p_kst 2.853333e-02   p_cons 6.024833e-01   p_joint 4.571667e-02

Outputting figure to mutsig2_images.part000000000181/TRIM37.3_2999_60000_0.028533_0.60248_0.045717.png
                gene_name: TRIM37
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 56 percent done.
TRIM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
TRIM39   10000 perm   2 sec   (6110 perm/sec)   p_kst 8.468000e-01   p_cons 7.040000e-02   p_joint 2.131000e-01

Joint ci ratio: 5.262906e-02	ci left: 2.114028e-01	ci right 2.228796e-01	k: 4342	n:20000
Cons ci ratio: 1.023338e-01	ci left: 6.484186e-02	ci right 7.188426e-02	k: 1366	n:20000
KS ci ratio: 1.173375e-02	ci left: 8.429994e-01	ci right 8.529992e-01	k: 16961	n:20000
TRIM39   20000 perm   4 sec   (5547 perm/sec)   p_kst 8.480500e-01   p_cons 6.830000e-02   p_joint 2.171000e-01

Joint ci ratio: 4.057053e-02	ci left: 2.324949e-01	ci right 2.421560e-01	k: 7119	n:30000
Cons ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
KS ci ratio: 9.548762e-03	ci left: 8.447968e-01	ci right 8.529355e-01	k: 25467	n:30000
TRIM39   30000 perm   6 sec   (5313 perm/sec)   p_kst 8.489000e-01   p_cons 7.003333e-02   p_joint 2.373000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM39.3_1585_30000_0.8489_0.070033_0.2373.png
                gene_name: TRIM39
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 58 percent done.
TRIM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
Cons ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
TRIM45   10000 perm   2 sec   (6392 perm/sec)   p_kst 4.911000e-01   p_cons 4.020000e-02   p_joint 2.302000e-01

Joint ci ratio: 6.339240e-02	ci left: 1.553880e-01	ci right 1.656109e-01	k: 3209	n:20000
Cons ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
KS ci ratio: 2.831323e-02	ci left: 4.823990e-01	ci right 4.963041e-01	k: 9787	n:20000
TRIM45   20000 perm   3 sec   (5724 perm/sec)   p_kst 4.893500e-01   p_cons 3.690000e-02   p_joint 1.604500e-01

Joint ci ratio: 5.755085e-02	ci left: 1.300654e-01	ci right 1.378057e-01	k: 4017	n:30000
Cons ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
KS ci ratio: 2.316069e-02	ci left: 4.827616e-01	ci right 4.941073e-01	k: 14653	n:30000
TRIM45   30000 perm   6 sec   (5439 perm/sec)   p_kst 4.884333e-01   p_cons 3.646667e-02   p_joint 1.339000e-01

Joint ci ratio: 5.177346e-02	ci left: 1.220952e-01	ci right 1.286093e-01	k: 5013	n:40000
Cons ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
KS ci ratio: 2.018418e-02	ci left: 4.803909e-01	ci right 4.902112e-01	k: 19412	n:40000
TRIM45   40000 perm   8 sec   (5261 perm/sec)   p_kst 4.853000e-01   p_cons 3.565000e-02   p_joint 1.253250e-01

Joint ci ratio: 3.209598e-02	ci left: 2.260784e-01	ci right 2.334730e-01	k: 11488	n:50000
Cons ci ratio: 8.713779e-02	ci left: 3.720242e-02	ci right 4.061138e-02	k: 1944	n:50000
KS ci ratio: 1.809249e-02	ci left: 4.798306e-01	ci right 4.886112e-01	k: 24211	n:50000
TRIM45   50000 perm   10 sec   (5115 perm/sec)   p_kst 4.842200e-01   p_cons 3.888000e-02   p_joint 2.297600e-01

Outputting figure to mutsig2_images.part000000000181/TRIM45.3_1767_50000_0.48422_0.03888_0.22976.png
                gene_name: TRIM45
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 59 percent done.
TRIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
TRIM5   10000 perm   2 sec   (6319 perm/sec)   p_kst 1.132000e-01   p_cons 4.284000e-01   p_joint 1.240000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 3.217566e-02	ci left: 4.190831e-01	ci right 4.328385e-01	k: 8519	n:20000
KS ci ratio: 7.710129e-02	ci left: 1.100200e-01	ci right 1.188924e-01	k: 2288	n:20000
TRIM5   20000 perm   4 sec   (5539 perm/sec)   p_kst 1.144000e-01   p_cons 4.259500e-01   p_joint 1.517500e-01

Outputting figure to mutsig2_images.part000000000181/TRIM5.3_1749_20000_0.1144_0.42595_0.15175.png
                gene_name: TRIM5
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 61 percent done.
TRIM52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
Cons ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
TRIM52   10000 perm   2 sec   (5624 perm/sec)   p_kst 4.924000e-01   p_cons 5.343000e-01   p_joint 5.143000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM52.3_902_10000_0.4924_0.5343_0.5143.png
                gene_name: TRIM52
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 62 percent done.
TRIM55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
Cons ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
KS ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
TRIM55   10000 perm   2 sec   (6120 perm/sec)   p_kst 4.580000e-01   p_cons 4.040000e-01   p_joint 5.657000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM55.3_1779_10000_0.458_0.404_0.5657.png
                gene_name: TRIM55
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 64 percent done.
TRIM56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
Cons ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
KS ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
TRIM56   10000 perm   2 sec   (6016 perm/sec)   p_kst 6.184000e-01   p_cons 2.141000e-01   p_joint 4.846000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM56.3_2272_10000_0.6184_0.2141_0.4846.png
                gene_name: TRIM56
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 66 percent done.
TRAF3IP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
TRAF3IP2   10000 perm   1 sec   (6724 perm/sec)   p_kst 6.310000e-02   p_cons 2.670000e-01   p_joint 2.659000e-01

Joint ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
Cons ci ratio: 4.588559e-02	ci left: 2.611759e-01	ci right 2.734919e-01	k: 5346	n:20000
KS ci ratio: 1.052128e-01	ci left: 6.147550e-02	ci right 6.835165e-02	k: 1297	n:20000
TRAF3IP2   20000 perm   3 sec   (5835 perm/sec)   p_kst 6.485000e-02   p_cons 2.673000e-01   p_joint 1.039500e-01

Joint ci ratio: 7.142810e-02	ci left: 8.796527e-02	ci right 9.451414e-02	k: 2736	n:30000
Cons ci ratio: 3.747029e-02	ci left: 2.622651e-01	ci right 2.723133e-01	k: 8018	n:30000
KS ci ratio: 8.718238e-02	ci left: 6.037437e-02	ci right 6.591060e-02	k: 1893	n:30000
TRAF3IP2   30000 perm   5 sec   (5535 perm/sec)   p_kst 6.310000e-02   p_cons 2.672667e-01   p_joint 9.120000e-02

Outputting figure to mutsig2_images.part000000000181/TRAF3IP2.2_1730_30000_0.0631_0.26727_0.0912.png
                gene_name: TRAF3IP2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 67 percent done.
TRAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
KS ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
TRAF5   10000 perm   2 sec   (6406 perm/sec)   p_kst 6.251000e-01   p_cons 3.365000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAF5.2_1714_10000_0.6251_0.3365_1.png
                gene_name: TRAF5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
TRAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
KS ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
TRAF7   10000 perm   2 sec   (6253 perm/sec)   p_kst 4.769000e-01   p_cons 9.485000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF7.2_2093_10000_0.4769_0.9485_0.7053.png
                gene_name: TRAF7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 70 percent done.
TRAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
TRAIP   10000 perm   2 sec   (6438 perm/sec)   p_kst 7.593000e-01   p_cons 1.654000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAIP.2_1470_10000_0.7593_0.1654_1.png
                gene_name: TRAIP
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TRAPPC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
Cons ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
TRAPPC6A   10000 perm   2 sec   (5033 perm/sec)   p_kst 3.563000e-01   p_cons 3.180000e-02   p_joint 5.670000e-02

Joint ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
Cons ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
KS ci ratio: 3.726903e-02	ci left: 3.494600e-01	ci right 3.627819e-01	k: 7122	n:20000
TRAPPC6A   20000 perm   4 sec   (4562 perm/sec)   p_kst 3.561000e-01   p_cons 3.030000e-02   p_joint 5.690000e-02

Joint ci ratio: 8.742900e-02	ci left: 6.004786e-02	ci right 6.557051e-02	k: 1883	n:30000
Cons ci ratio: 1.273824e-01	ci left: 2.864765e-02	ci right 3.257728e-02	k: 917	n:30000
KS ci ratio: 3.052646e-02	ci left: 3.492506e-01	ci right 3.601108e-01	k: 10640	n:30000
TRAPPC6A   30000 perm   7 sec   (4522 perm/sec)   p_kst 3.546667e-01   p_cons 3.056667e-02   p_joint 6.276667e-02

Joint ci ratio: 7.688196e-02	ci left: 5.867404e-02	ci right 6.338994e-02	k: 2440	n:40000
Cons ci ratio: 1.121251e-01	ci left: 2.798515e-02	ci right 3.133359e-02	k: 1185	n:40000
KS ci ratio: 2.645835e-02	ci left: 3.496110e-01	ci right 3.590102e-01	k: 14172	n:40000
TRAPPC6A   40000 perm   9 sec   (4640 perm/sec)   p_kst 3.543000e-01   p_cons 2.962500e-02   p_joint 6.100000e-02

Joint ci ratio: 7.476041e-02	ci left: 5.016816e-02	ci right 5.408404e-02	k: 2605	n:50000
Cons ci ratio: 1.012241e-01	ci left: 2.764407e-02	ci right 3.061094e-02	k: 1455	n:50000
KS ci ratio: 2.367773e-02	ci left: 3.498668e-01	ci right 3.582701e-01	k: 17703	n:50000
TRAPPC6A   50000 perm   11 sec   (4690 perm/sec)   p_kst 3.540600e-01   p_cons 2.910000e-02   p_joint 5.210000e-02

Joint ci ratio: 6.883152e-02	ci left: 4.951541e-02	ci right 5.306149e-02	k: 3076	n:60000
Cons ci ratio: 9.246469e-02	ci left: 2.773695e-02	ci right 3.044219e-02	k: 1744	n:60000
KS ci ratio: 2.162874e-02	ci left: 3.499397e-01	ci right 3.576078e-01	k: 21226	n:60000
TRAPPC6A   60000 perm   13 sec   (4703 perm/sec)   p_kst 3.537667e-01   p_cons 2.906667e-02   p_joint 5.126667e-02

Outputting figure to mutsig2_images.part000000000181/TRAPPC6A.2_546_60000_0.35377_0.029067_0.051267.png
                gene_name: TRAPPC6A
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 73 percent done.
TRAPPC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
TRAPPC6B   10000 perm   1 sec   (7115 perm/sec)   p_kst 8.622000e-01   p_cons 3.740000e-02   p_joint 1.467000e-01

Joint ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
Cons ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
KS ci ratio: 1.096769e-02	ci left: 8.598308e-01	ci right 8.693629e-01	k: 17293	n:20000
TRAPPC6B   20000 perm   3 sec   (5935 perm/sec)   p_kst 8.646500e-01   p_cons 3.700000e-02   p_joint 1.662500e-01

Joint ci ratio: 9.005137e-03	ci left: 8.593945e-01	ci right 8.672016e-01	k: 25900	n:30000
Cons ci ratio: 1.137677e-01	ci left: 3.589704e-02	ci right 4.025967e-02	k: 1141	n:30000
KS ci ratio: 9.105356e-03	ci left: 8.567302e-01	ci right 8.645998e-01	k: 25821	n:30000
TRAPPC6B   30000 perm   5 sec   (5767 perm/sec)   p_kst 8.607000e-01   p_cons 3.803333e-02   p_joint 8.633333e-01

Joint ci ratio: 7.788935e-03	ci left: 8.602229e-01	ci right 8.669742e-01	k: 34545	n:40000
Cons ci ratio: 9.732521e-02	ci left: 3.707501e-02	ci right 4.089229e-02	k: 1558	n:40000
KS ci ratio: 7.884548e-03	ci left: 8.572933e-01	ci right 8.641043e-01	k: 34429	n:40000
TRAPPC6B   40000 perm   7 sec   (5618 perm/sec)   p_kst 8.607250e-01   p_cons 3.895000e-02   p_joint 8.636250e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC6B.2_501_40000_0.86072_0.03895_0.86362.png
                gene_name: TRAPPC6B
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 75 percent done.
TRIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
KS ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
TRIB2   10000 perm   2 sec   (6617 perm/sec)   p_kst 9.596000e-01   p_cons 5.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIB2.2_1044_10000_0.9596_0.5808_1.png
                gene_name: TRIB2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TRIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 3.065336e-02	ci left: 6.109050e-01	ci right 6.300247e-01	k: 6205	n:10000
TRIL   10000 perm   2 sec   (5409 perm/sec)   p_kst 6.205000e-01   p_cons 6.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIL.2_2440_10000_0.6205_0.6662_1.png
                gene_name: TRIL
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
TRIM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
Cons ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
KS ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
TRIM11   10000 perm   2 sec   (6603 perm/sec)   p_kst 4.230000e-01   p_cons 5.067000e-01   p_joint 6.395000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM11.2_1431_10000_0.423_0.5067_0.6395.png
                gene_name: TRIM11
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 80 percent done.
TRIM13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
Cons ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
KS ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
TRIM13   10000 perm   2 sec   (6579 perm/sec)   p_kst 3.558000e-01   p_cons 5.271000e-01   p_joint 5.262000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM13.2_1241_10000_0.3558_0.5271_0.5262.png
                gene_name: TRIM13
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 81 percent done.
TRIM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
TRIM17   10000 perm   1 sec   (6783 perm/sec)   p_kst 1.318000e-01   p_cons 1.899000e-01   p_joint 3.829000e-01

Joint ci ratio: 6.504133e-02	ci left: 1.486779e-01	ci right 1.587230e-01	k: 3073	n:20000
Cons ci ratio: 5.691682e-02	ci left: 1.862152e-01	ci right 1.971746e-01	k: 3833	n:20000
KS ci ratio: 7.090811e-02	ci left: 1.278300e-01	ci right 1.372771e-01	k: 2650	n:20000
TRIM17   20000 perm   3 sec   (5983 perm/sec)   p_kst 1.325000e-01   p_cons 1.916500e-01   p_joint 1.536500e-01

Outputting figure to mutsig2_images.part000000000181/TRIM17.2_1607_20000_0.1325_0.19165_0.15365.png
                gene_name: TRIM17
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 83 percent done.
TRIM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
Cons ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
KS ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
TRIM21   10000 perm   2 sec   (6624 perm/sec)   p_kst 8.044000e-01   p_cons 4.301000e-01   p_joint 7.467000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM21.2_1452_10000_0.8044_0.4301_0.7467.png
                gene_name: TRIM21
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 84 percent done.
TRIM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
KS ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
TRIM23   10000 perm   1 sec   (6739 perm/sec)   p_kst 9.556000e-01   p_cons 9.754000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM23.2_1836_10000_0.9556_0.9754_1.png
                gene_name: TRIM23
               theta_stop: 0.0085 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TRIM24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
Cons ci ratio: 4.644672e-02	ci left: 4.062155e-01	ci right 4.256335e-01	k: 4159	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
TRIM24   10000 perm   2 sec   (5914 perm/sec)   p_kst 5.860000e-02   p_cons 4.159000e-01   p_joint 4.768000e-01

Joint ci ratio: 4.867812e-02	ci left: 2.388535e-01	ci right 2.508208e-01	k: 4896	n:20000
Cons ci ratio: 3.292707e-02	ci left: 4.078599e-01	ci right 4.215649e-01	k: 8294	n:20000
KS ci ratio: 1.112983e-01	ci left: 5.514077e-02	ci right 6.168835e-02	k: 1167	n:20000
TRIM24   20000 perm   4 sec   (5303 perm/sec)   p_kst 5.835000e-02   p_cons 4.147000e-01   p_joint 2.448000e-01

Joint ci ratio: 3.744480e-02	ci left: 2.625301e-01	ci right 2.725816e-01	k: 8026	n:30000
Cons ci ratio: 2.674587e-02	ci left: 4.116450e-01	ci right 4.228377e-01	k: 12517	n:30000
KS ci ratio: 9.115190e-02	ci left: 5.541384e-02	ci right 6.073881e-02	k: 1741	n:30000
TRIM24   30000 perm   6 sec   (5068 perm/sec)   p_kst 5.803333e-02   p_cons 4.172333e-01   p_joint 2.675333e-01

Outputting figure to mutsig2_images.part000000000181/TRIM24.2_3229_30000_0.058033_0.41723_0.26753.png
                gene_name: TRIM24
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 88 percent done.
TRIM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
TRIM25   10000 perm   2 sec   (6324 perm/sec)   p_kst 9.460000e-02   p_cons 5.420000e-01   p_joint 4.367000e-01

Joint ci ratio: 3.288641e-02	ci left: 4.084584e-01	ci right 4.221663e-01	k: 8306	n:20000
Cons ci ratio: 2.560971e-02	ci left: 5.325118e-01	ci right 5.463768e-01	k: 10789	n:20000
KS ci ratio: 8.421077e-02	ci left: 9.361882e-02	ci right 1.018985e-01	k: 1954	n:20000
TRIM25   20000 perm   4 sec   (5607 perm/sec)   p_kst 9.770000e-02   p_cons 5.394500e-01   p_joint 4.153000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM25.2_1929_20000_0.0977_0.53945_0.4153.png
                gene_name: TRIM25
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 89 percent done.
TRIM28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
TRIM28   10000 perm   2 sec   (6193 perm/sec)   p_kst 4.458000e-01   p_cons 2.157000e-01   p_joint 2.583000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM28.2_2576_10000_0.4458_0.2157_0.2583.png
                gene_name: TRIM28
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 91 percent done.
TRIM31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
Cons ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
KS ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
TRIM31   10000 perm   2 sec   (6587 perm/sec)   p_kst 5.888000e-01   p_cons 4.460000e-01   p_joint 4.927000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM31.2_1310_10000_0.5888_0.446_0.4927.png
                gene_name: TRIM31
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 92 percent done.
TRIM35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
KS ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
TRIM35   10000 perm   2 sec   (6540 perm/sec)   p_kst 8.704000e-01   p_cons 8.569000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM35.2_1506_10000_0.8704_0.8569_1.png
                gene_name: TRIM35
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TRIM44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
Cons ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
KS ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
TRIM44   10000 perm   1 sec   (6711 perm/sec)   p_kst 5.247000e-01   p_cons 8.185000e-01   p_joint 6.124000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM44.2_1055_10000_0.5247_0.8185_0.6124.png
                gene_name: TRIM44
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 95 percent done.
TRIM47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
TRIM47   10000 perm   2 sec   (6254 perm/sec)   p_kst 9.500000e-02   p_cons 2.229000e-01   p_joint 2.060000e-01

Joint ci ratio: 6.548238e-02	ci left: 1.469515e-01	ci right 1.569499e-01	k: 3038	n:20000
Cons ci ratio: 5.249014e-02	ci left: 2.122941e-01	ci right 2.237880e-01	k: 4360	n:20000
KS ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
TRIM47   20000 perm   4 sec   (5522 perm/sec)   p_kst 9.430000e-02   p_cons 2.180000e-01   p_joint 1.519000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM47.2_1941_20000_0.0943_0.218_0.1519.png
                gene_name: TRIM47
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 97 percent done.
TRIM50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
Cons ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
KS ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
TRIM50   10000 perm   2 sec   (6441 perm/sec)   p_kst 2.489000e-01   p_cons 4.734000e-01   p_joint 3.943000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM50.2_1488_10000_0.2489_0.4734_0.3943.png
                gene_name: TRIM50
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 98 percent done.
TRIM54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
TRIM54   10000 perm   1 sec   (6916 perm/sec)   p_kst 2.923000e-01   p_cons 3.200000e-02   p_joint 9.747000e-01

Joint ci ratio: 1.662211e-02	ci left: 7.293283e-01	ci right 7.416032e-01	k: 14710	n:20000
Cons ci ratio: 1.498089e-01	ci left: 3.061553e-02	ci right 3.562141e-02	k: 661	n:20000
KS ci ratio: 4.371043e-02	ci left: 2.804887e-01	ci right 2.930733e-01	k: 5735	n:20000
TRIM54   20000 perm   3 sec   (6098 perm/sec)   p_kst 2.867500e-01   p_cons 3.305000e-02   p_joint 7.355000e-01

Joint ci ratio: 1.061464e-02	ci left: 8.153022e-01	ci right 8.240358e-01	k: 24591	n:30000
Cons ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
KS ci ratio: 3.597953e-02	ci left: 2.783713e-01	ci right 2.886040e-01	k: 8504	n:30000
TRIM54   30000 perm   5 sec   (5772 perm/sec)   p_kst 2.834667e-01   p_cons 4.286667e-02   p_joint 8.197000e-01

Joint ci ratio: 2.289630e-02	ci left: 4.180270e-01	ci right 4.277342e-01	k: 16915	n:40000
Cons ci ratio: 1.068538e-01	ci left: 3.080812e-02	ci right 3.431018e-02	k: 1301	n:40000
KS ci ratio: 3.116689e-02	ci left: 2.789622e-01	ci right 2.878193e-01	k: 11335	n:40000
TRIM54   40000 perm   7 sec   (5516 perm/sec)   p_kst 2.833750e-01   p_cons 3.252500e-02   p_joint 4.228750e-01

Joint ci ratio: 2.030631e-02	ci left: 4.226787e-01	ci right 4.313698e-01	k: 21351	n:50000
Cons ci ratio: 9.577098e-02	ci left: 3.086522e-02	ci right 3.398937e-02	k: 1620	n:50000
KS ci ratio: 2.797430e-02	ci left: 2.780188e-01	ci right 2.859265e-01	k: 14098	n:50000
TRIM54   50000 perm   9 sec   (5365 perm/sec)   p_kst 2.819600e-01   p_cons 3.240000e-02   p_joint 4.270200e-01

Outputting figure to mutsig2_images.part000000000181/TRIM54.2_1239_50000_0.28196_0.0324_0.42702.png
                gene_name: TRIM54
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000181
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 181 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1699>
Subject: Job 4422647: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1699>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000182> was used as the working directory.
Started at Wed Oct 24 18:10:06 2012
Results reported at Wed Oct 24 18:39:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000182.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000182.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 182  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000182.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1864.86 sec.
    Max Memory :      5348 MB
    Max Swap   :      7735 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
182
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 182
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 182: processing genes 16376 - 16466
Calculating significance of each gene.
Using projection method.
16376	TRIM58	5.509518e-08
16377	TRIM59	1
16378	TRIM6	1
16379	TRIM6-TRIM34	7.626948e-01
16380	TRIM60	1
16381	TRIM61	1
16382	TRIM62	1
16383	TRIM63	6.611900e-01
16384	TRIM65	3.356178e-01
16385	TRIM67	7.983115e-01
16386	TRIM68	1
16387	TRIM69	7.823579e-02
16388	TRIM7	5.866909e-01
16389	TRIM71	6.506489e-01
16390	TRIM72	2.588509e-03
16391	TRIM73	1
16392	TRIM74	1
16393	TRIM8	8.244695e-01
16394	TRIM9	1
16395	TRIML1	9.002693e-01
16396	TRIML2	2.982866e-02
16397	TRIO	9.971566e-01
16398	TRIOBP	9.401689e-01
16399	TRIP10	1
16400	TRIP11	9.931937e-01
16401	TRIP12	2.246375e-01
16402	TRIP13	3.377580e-02
16403	TRIP4	1
16404	TRIP6	9.518591e-01
16405	TRIT1	8.862498e-01
16406	TRMT1	9.765398e-01
16407	TRMT11	7.467047e-01
16408	TRMT112	1
16409	TRMT12	3.529221e-01
16410	TRMT2A	9.009277e-01
16411	TRMT2B	1.528691e-01
16412	TRMT5	8.707057e-01
16413	TRMT6	1
16414	TRMT61A	1
16415	TRMT61B	8.175659e-01
16416	TRMU	1
16417	TRNAU1AP	1
16418	TRNT1	7.025848e-01
16419	TRO	3.528429e-01
16420	TROAP	9.599748e-01
16421	TROVE2	8.007776e-01
16422	TRPA1	9.021201e-01
16423	TRPC1	1.828030e-01
16424	TRPC3	3.261387e-01
16425	TRPC4	1
16426	TRPC4AP	9.233103e-01
16427	TRPC5	3.274740e-01
16428	TRPC6	1.912904e-01
16429	TRPC7	1
16430	TRPM1	9.922359e-01
16431	TRPM2	9.484465e-01
16432	TRPM3	6.306690e-01
16433	TRPM4	6.825839e-01
16434	TRPM5	9.933840e-01
16435	TRPM6	9.174009e-01
16436	TRPM7	9.973867e-01
16437	TRPM8	9.990794e-01
16438	TRPS1	8.807989e-01
16439	TRPT1	3.439971e-01
16440	TRPV1	6.090763e-01
16441	TRPV2	6.550442e-01
16442	TRPV3	4.390682e-01
16443	TRPV4	9.495275e-01
16444	TRPV5	2.356035e-02
16445	TRPV6	8.424866e-01
16446	TRRAP	9.982910e-01
16447	TRUB1	1
16448	TRUB2	7.469857e-01
16449	TRYX3	6.624894e-01
16450	TSC1	6.687826e-01
16451	TSC2	1
16452	TSC22D1	8.320761e-01
16453	TSC22D2	9.451050e-01
16454	TSC22D3	1
16455	TSC22D4	3.490899e-01
16456	TSEN15	1
16457	TSEN2	1
16458	TSEN34	2.503942e-01
16459	TSEN54	1
16460	TSFM	1
16461	TSG101	3.401571e-01
16462	TSGA10	8.924112e-01
16463	TSGA10IP	2.905650e-01
16464	TSGA13	1
16465	TSGA14	4.005691e-01
16466	TSHB	1
Done

Running MutSig 2:
Scatter job 182: processing genes 16376 - 16466
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
Cons ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
KS ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
TRPS1   10000 perm   3 sec   (3860 perm/sec)   p_kst 6.582000e-01   p_cons 3.670000e-01   p_joint 6.908000e-01

Outputting figure to mutsig2_images.part000000000182/TRPS1.32_3909_10000_0.6582_0.367_0.6908.png
                gene_name: TRPS1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 2 percent done.
TRRAP
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
TRRAP   10000 perm   3 sec   (2877 perm/sec)   p_kst 6.529000e-01   p_cons 4.260000e-01   p_joint 7.810000e-01

Outputting figure to mutsig2_images.part000000000182/TRRAP.24_11773_10000_0.6529_0.426_0.781.png
                gene_name: TRRAP
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 3 percent done.
TRPM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
Cons ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
KS ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
TRPM6   10000 perm   3 sec   (3571 perm/sec)   p_kst 2.306000e-01   p_cons 5.438000e-01   p_joint 3.813000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM6.21_6269_10000_0.2306_0.5438_0.3813.png
                gene_name: TRPM6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
TRPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
Cons ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
KS ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
TRPM1   10000 perm   3 sec   (3858 perm/sec)   p_kst 7.253000e-01   p_cons 2.719000e-01   p_joint 7.753000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM1.18_4916_10000_0.7253_0.2719_0.7753.png
                gene_name: TRPM1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 6 percent done.
TRPM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
Cons ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
KS ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
TRPM3   10000 perm   3 sec   (3975 perm/sec)   p_kst 6.176000e-01   p_cons 5.100000e-03   p_joint 3.350000e-02

Joint ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
Cons ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
KS ci ratio: 2.278207e-02	ci left: 5.899629e-01	ci right 6.036089e-01	k: 11936	n:20000
TRPM3   20000 perm   5 sec   (3671 perm/sec)   p_kst 5.968000e-01   p_cons 5.850000e-03   p_joint 2.580000e-02

Joint ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
Cons ci ratio: 3.181960e-01	ci left: 4.233429e-03	ci right 5.864692e-03	k: 150	n:30000
KS ci ratio: 1.872058e-02	ci left: 5.881502e-01	ci right 5.992983e-01	k: 17812	n:30000
TRPM3   30000 perm   8 sec   (3532 perm/sec)   p_kst 5.937333e-01   p_cons 5.000000e-03   p_joint 1.380000e-02

Joint ci ratio: 1.382602e-01	ci left: 1.833645e-02	ci right 2.108390e-02	k: 787	n:40000
Cons ci ratio: 2.737508e-01	ci left: 4.402273e-03	ci right 5.821036e-03	k: 203	n:40000
KS ci ratio: 1.618857e-02	ci left: 5.896191e-01	ci right 5.992672e-01	k: 23778	n:40000
TRPM3   40000 perm   12 sec   (3446 perm/sec)   p_kst 5.944500e-01   p_cons 5.075000e-03   p_joint 1.967500e-02

Joint ci ratio: 1.152866e-01	ci left: 2.129561e-02	ci right 2.392022e-02	k: 1129	n:50000
Cons ci ratio: 2.237707e-01	ci left: 5.417421e-03	ci right 6.800864e-03	k: 304	n:50000
KS ci ratio: 1.495323e-02	ci left: 5.744977e-01	ci right 5.831731e-01	k: 28942	n:50000
TRPM3   50000 perm   15 sec   (3378 perm/sec)   p_kst 5.788400e-01   p_cons 6.080000e-03   p_joint 2.258000e-02

Joint ci ratio: 1.036879e-01	ci left: 2.205897e-02	ci right 2.448745e-02	k: 1395	n:60000
Cons ci ratio: 2.037148e-01	ci left: 5.508443e-03	ci right 6.773375e-03	k: 367	n:60000
KS ci ratio: 1.364222e-02	ci left: 5.751709e-01	ci right 5.830881e-01	k: 34748	n:60000
TRPM3   60000 perm   18 sec   (3323 perm/sec)   p_kst 5.791333e-01   p_cons 6.116667e-03   p_joint 2.325000e-02

Joint ci ratio: 1.077907e-01	ci left: 1.754244e-02	ci right 1.955489e-02	k: 1297	n:70000
Cons ci ratio: 1.930258e-01	ci left: 5.291679e-03	ci right 6.435580e-03	k: 409	n:70000
KS ci ratio: 1.261005e-02	ci left: 5.762475e-01	ci right 5.835744e-01	k: 40594	n:70000
TRPM3   70000 perm   21 sec   (3269 perm/sec)   p_kst 5.799143e-01   p_cons 5.842857e-03   p_joint 1.852857e-02

Joint ci ratio: 9.782867e-02	ci left: 1.871162e-02	ci right 2.064843e-02	k: 1573	n:80000
Cons ci ratio: 1.800905e-01	ci left: 5.357158e-03	ci right 6.429151e-03	k: 470	n:80000
KS ci ratio: 1.181295e-02	ci left: 5.757699e-01	ci right 5.826243e-01	k: 46336	n:80000
TRPM3   80000 perm   25 sec   (3223 perm/sec)   p_kst 5.792000e-01   p_cons 5.875000e-03   p_joint 1.966250e-02

Joint ci ratio: 9.225374e-02	ci left: 1.875861e-02	ci right 2.058365e-02	k: 1769	n:90000
Cons ci ratio: 1.696100e-01	ci left: 5.399438e-03	ci right 6.410585e-03	k: 530	n:90000
KS ci ratio: 1.115668e-02	ci left: 5.751213e-01	ci right 5.815848e-01	k: 52052	n:90000
TRPM3   90000 perm   28 sec   (3179 perm/sec)   p_kst 5.783556e-01   p_cons 5.888889e-03   p_joint 1.965556e-02

Joint ci ratio: 8.540981e-02	ci left: 1.974814e-02	ci right 2.151981e-02	k: 2062	n:100000
Cons ci ratio: 1.630038e-01	ci left: 5.281158e-03	ci right 6.227855e-03	k: 574	n:100000
KS ci ratio: 1.057583e-02	ci left: 5.756724e-01	ci right 5.818030e-01	k: 57874	n:100000
TRPM3   100000 perm   32 sec   (3136 perm/sec)   p_kst 5.787400e-01   p_cons 5.740000e-03   p_joint 2.062000e-02

Joint ci ratio: 8.538620e-02	ci left: 1.799664e-02	ci right 1.961069e-02	k: 2067	n:110000
Cons ci ratio: 1.548650e-01	ci left: 5.342295e-03	ci right 6.247697e-03	k: 636	n:110000
KS ci ratio: 1.007153e-02	ci left: 5.764033e-01	ci right 5.822470e-01	k: 63726	n:110000
TRPM3   110000 perm   36 sec   (3096 perm/sec)   p_kst 5.793273e-01   p_cons 5.781818e-03   p_joint 1.879091e-02

Joint ci ratio: 8.249962e-02	ci left: 1.770425e-02	ci right 1.923581e-02	k: 2215	n:120000
Cons ci ratio: 1.477287e-01	ci left: 5.402248e-03	ci right 6.271895e-03	k: 699	n:120000
KS ci ratio: 9.632588e-03	ci left: 5.770429e-01	ci right 5.826365e-01	k: 69581	n:120000
TRPM3   120000 perm   39 sec   (3061 perm/sec)   p_kst 5.798417e-01   p_cons 5.825000e-03   p_joint 1.845833e-02

Joint ci ratio: 7.233378e-02	ci left: 2.129258e-02	ci right 2.289807e-02	k: 2871	n:130000
Cons ci ratio: 1.418705e-01	ci left: 5.424102e-03	ci right 6.259711e-03	k: 758	n:130000
KS ci ratio: 8.786210e-03	ci left: 6.022595e-01	ci right 6.075820e-01	k: 78640	n:130000
TRPM3   130000 perm   43 sec   (3025 perm/sec)   p_kst 6.049231e-01   p_cons 5.830769e-03   p_joint 2.208462e-02

Joint ci ratio: 7.244366e-02	ci left: 1.974305e-02	ci right 2.123404e-02	k: 2867	n:140000
Cons ci ratio: 1.381091e-01	ci left: 5.326140e-03	ci right 6.123113e-03	k: 800	n:140000
KS ci ratio: 8.472586e-03	ci left: 6.020188e-01	ci right 6.071483e-01	k: 84642	n:140000
TRPM3   140000 perm   47 sec   (2989 perm/sec)   p_kst 6.045857e-01   p_cons 5.714286e-03   p_joint 2.047857e-02

Joint ci ratio: 7.090987e-02	ci left: 1.925817e-02	ci right 2.068047e-02	k: 2994	n:150000
Cons ci ratio: 1.325140e-01	ci left: 5.415513e-03	ci right 6.190444e-03	k: 869	n:150000
KS ci ratio: 8.187224e-03	ci left: 6.019935e-01	ci right 6.069491e-01	k: 90671	n:150000
TRPM3   150000 perm   51 sec   (2955 perm/sec)   p_kst 6.044733e-01   p_cons 5.793333e-03   p_joint 1.996000e-02

Joint ci ratio: 6.395174e-02	ci left: 2.220949e-02	ci right 2.368287e-02	k: 3670	n:160000
Cons ci ratio: 1.284455e-01	ci left: 5.415619e-03	ci right 6.164959e-03	k: 925	n:160000
KS ci ratio: 7.932196e-03	ci left: 6.017738e-01	ci right 6.065724e-01	k: 96668	n:160000
TRPM3   160000 perm   55 sec   (2925 perm/sec)   p_kst 6.041750e-01   p_cons 5.781250e-03   p_joint 2.293750e-02

Joint ci ratio: 6.114527e-02	ci left: 2.288360e-02	ci right 2.433271e-02	k: 4012	n:170000
Cons ci ratio: 1.249863e-01	ci left: 5.393236e-03	ci right 6.117893e-03	k: 977	n:170000
KS ci ratio: 7.683420e-03	ci left: 6.025890e-01	ci right 6.072427e-01	k: 102836	n:170000
TRPM3   170000 perm   59 sec   (2892 perm/sec)   p_kst 6.049176e-01   p_cons 5.747059e-03   p_joint 2.360000e-02

Joint ci ratio: 5.894868e-02	ci left: 2.327048e-02	ci right 2.468935e-02	k: 4315	n:180000
Cons ci ratio: 1.214372e-01	ci left: 5.405906e-03	ci right 6.110156e-03	k: 1035	n:180000
KS ci ratio: 7.462969e-03	ci left: 6.029096e-01	ci right 6.074315e-01	k: 108931	n:180000
TRPM3   180000 perm   63 sec   (2862 perm/sec)   p_kst 6.051722e-01   p_cons 5.750000e-03   p_joint 2.397222e-02

Joint ci ratio: 5.764783e-02	ci left: 2.307256e-02	ci right 2.444728e-02	k: 4513	n:190000
Cons ci ratio: 1.178495e-01	ci left: 5.448153e-03	ci right 6.135478e-03	k: 1099	n:190000
KS ci ratio: 7.270462e-03	ci left: 6.025395e-01	ci right 6.069415e-01	k: 114901	n:190000
TRPM3   190000 perm   67 sec   (2834 perm/sec)   p_kst 6.047421e-01   p_cons 5.784211e-03   p_joint 2.375263e-02

Joint ci ratio: 5.657710e-02	ci left: 2.277641e-02	ci right 2.410745e-02	k: 4687	n:200000
Cons ci ratio: 1.154635e-01	ci left: 5.399026e-03	ci right 6.065423e-03	k: 1145	n:200000
KS ci ratio: 7.089813e-03	ci left: 6.023631e-01	ci right 6.066539e-01	k: 120902	n:200000
TRPM3   200000 perm   71 sec   (2808 perm/sec)   p_kst 6.045100e-01   p_cons 5.725000e-03   p_joint 2.343500e-02

Joint ci ratio: 5.523314e-02	ci left: 2.277644e-02	ci right 2.407486e-02	k: 4918	n:210000
Cons ci ratio: 1.124602e-01	ci left: 5.428757e-03	ci right 6.080238e-03	k: 1207	n:210000
KS ci ratio: 6.917648e-03	ci left: 6.025050e-01	ci right 6.066921e-01	k: 126966	n:210000
TRPM3   210000 perm   76 sec   (2780 perm/sec)   p_kst 6.046000e-01   p_cons 5.747619e-03   p_joint 2.341905e-02

Joint ci ratio: 5.380436e-02	ci left: 2.292483e-02	ci right 2.419685e-02	k: 5182	n:220000
Cons ci ratio: 1.106477e-01	ci left: 5.358729e-03	ci right 5.990766e-03	k: 1247	n:220000
KS ci ratio: 6.761365e-03	ci left: 6.023576e-01	ci right 6.064487e-01	k: 132969	n:220000
TRPM3   220000 perm   80 sec   (2753 perm/sec)   p_kst 6.044045e-01   p_cons 5.668182e-03   p_joint 2.355455e-02

Joint ci ratio: 5.627474e-02	ci left: 2.007912e-02	ci right 2.124605e-02	k: 4751	n:230000
Cons ci ratio: 1.083714e-01	ci left: 5.349863e-03	ci right 5.967043e-03	k: 1300	n:230000
KS ci ratio: 6.609384e-03	ci left: 6.026462e-01	ci right 6.066468e-01	k: 139069	n:230000
TRPM3   230000 perm   84 sec   (2728 perm/sec)   p_kst 6.046478e-01   p_cons 5.652174e-03   p_joint 2.065652e-02

Joint ci ratio: 4.989784e-02	ci left: 2.444489e-02	ci right 2.569994e-02	k: 6016	n:240000
Cons ci ratio: 1.058377e-01	ci left: 5.382425e-03	ci right 5.987940e-03	k: 1363	n:240000
KS ci ratio: 6.469800e-03	ci left: 6.027198e-01	ci right 6.066360e-01	k: 145123	n:240000
TRPM3   240000 perm   89 sec   (2702 perm/sec)   p_kst 6.046792e-01   p_cons 5.679167e-03   p_joint 2.506667e-02

Joint ci ratio: 5.044568e-02	ci left: 2.298873e-02	ci right 2.418235e-02	k: 5895	n:250000
Cons ci ratio: 1.039141e-01	ci left: 5.365774e-03	ci right 5.957775e-03	k: 1414	n:250000
KS ci ratio: 6.364455e-03	ci left: 6.008467e-01	ci right 6.046869e-01	k: 150692	n:250000
TRPM3   250000 perm   93 sec   (2676 perm/sec)   p_kst 6.027680e-01   p_cons 5.656000e-03   p_joint 2.358000e-02

Joint ci ratio: 5.120709e-02	ci left: 2.147757e-02	ci right 2.261005e-02	k: 5730	n:260000
Cons ci ratio: 1.021618e-01	ci left: 5.343000e-03	ci right 5.921950e-03	k: 1463	n:260000
KS ci ratio: 6.242551e-03	ci left: 6.007544e-01	ci right 6.045202e-01	k: 156686	n:260000
TRPM3   260000 perm   98 sec   (2649 perm/sec)   p_kst 6.026385e-01   p_cons 5.626923e-03   p_joint 2.203846e-02

Joint ci ratio: 4.779216e-02	ci left: 2.372978e-02	ci right 2.489528e-02	k: 6563	n:270000
Cons ci ratio: 1.001299e-01	ci left: 5.361714e-03	ci right 5.930458e-03	k: 1523	n:270000
KS ci ratio: 6.131326e-03	ci left: 6.003620e-01	ci right 6.040580e-01	k: 162597	n:270000
TRPM3   270000 perm   103 sec   (2619 perm/sec)   p_kst 6.022111e-01   p_cons 5.640741e-03   p_joint 2.430741e-02

Joint ci ratio: 4.615879e-02	ci left: 2.453079e-02	ci right 2.569336e-02	k: 7030	n:280000
Cons ci ratio: 9.837080e-02	ci left: 5.361777e-03	ci right 5.919959e-03	k: 1578	n:280000
KS ci ratio: 6.017303e-03	ci left: 6.006774e-01	ci right 6.043062e-01	k: 168698	n:280000
TRPM3   280000 perm   108 sec   (2593 perm/sec)   p_kst 6.024929e-01   p_cons 5.635714e-03   p_joint 2.510714e-02

Outputting figure to mutsig2_images.part000000000182/TRPM3.18_5347_280000_0.60249_0.0056357_0.025107.png
                gene_name: TRPM3
               theta_stop: 0.098 
                    nperm: 280000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 8 percent done.
TRIP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
TRIP12   10000 perm   3 sec   (3783 perm/sec)   p_kst 5.070000e-01   p_cons 4.157000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP12.16_6139_10000_0.507_0.4157_0.6924.png
                gene_name: TRIP12
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 9 percent done.
TRPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
Cons ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
KS ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
TRPC5   10000 perm   2 sec   (4656 perm/sec)   p_kst 4.221000e-01   p_cons 4.614000e-01   p_joint 4.477000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC5.16_2962_10000_0.4221_0.4614_0.4477.png
                gene_name: TRPC5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 11 percent done.
TRIM58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
Cons ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
KS ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
TRIM58   10000 perm   2 sec   (4823 perm/sec)   p_kst 2.420000e-02   p_cons 1.625000e-01   p_joint 6.640000e-02

Joint ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
Cons ci ratio: 5.966693e-02	ci left: 1.721773e-01	ci right 1.828166e-01	k: 3549	n:20000
KS ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
TRIM58   20000 perm   5 sec   (4410 perm/sec)   p_kst 2.525000e-02   p_cons 1.774500e-01   p_joint 3.745000e-02

Joint ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
Cons ci ratio: 4.876819e-02	ci left: 1.728609e-01	ci right 1.815350e-01	k: 5315	n:30000
KS ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
TRIM58   30000 perm   7 sec   (4253 perm/sec)   p_kst 2.603333e-02   p_cons 1.771667e-01   p_joint 3.453333e-02

Joint ci ratio: 1.118823e-01	ci left: 2.810675e-02	ci right 3.146198e-02	k: 1190	n:40000
Cons ci ratio: 4.224545e-02	ci left: 1.733699e-01	ci right 1.808770e-01	k: 7084	n:40000
KS ci ratio: 1.207390e-01	ci left: 2.412277e-02	ci right 2.724661e-02	k: 1026	n:40000
TRIM58   40000 perm   10 sec   (4140 perm/sec)   p_kst 2.565000e-02   p_cons 1.771000e-01   p_joint 2.975000e-02

Joint ci ratio: 1.115081e-01	ci left: 2.277345e-02	ci right 2.548219e-02	k: 1205	n:50000
Cons ci ratio: 3.975737e-02	ci left: 1.595340e-01	ci right 1.660252e-01	k: 8138	n:50000
KS ci ratio: 1.089434e-01	ci left: 2.386329e-02	ci right 2.663220e-02	k: 1261	n:50000
TRIM58   50000 perm   12 sec   (4050 perm/sec)   p_kst 2.522000e-02   p_cons 1.627600e-01   p_joint 2.410000e-02

Joint ci ratio: 8.538810e-02	ci left: 3.248252e-02	ci right 3.539612e-02	k: 2035	n:60000
Cons ci ratio: 3.444511e-02	ci left: 1.744666e-01	ci right 1.805980e-01	k: 10651	n:60000
KS ci ratio: 9.304291e-02	ci left: 2.739484e-02	ci right 3.008433e-02	k: 1723	n:60000
TRIM58   60000 perm   15 sec   (3964 perm/sec)   p_kst 2.871667e-02   p_cons 1.775167e-01   p_joint 3.391667e-02

Outputting figure to mutsig2_images.part000000000182/TRIM58.15_1485_60000_0.028717_0.17752_0.033917.png
                gene_name: TRIM58
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 12 percent done.
TRIO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.510880e-02	ci left: 1.382511e-01	ci right 1.521563e-01	k: 1451	n:10000
Cons ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KS ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
TRIO   10000 perm   3 sec   (3219 perm/sec)   p_kst 9.050000e-02   p_cons 5.247000e-01   p_joint 1.451000e-01

Joint ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
Cons ci ratio: 2.685147e-02	ci left: 5.088971e-01	ci right 5.227983e-01	k: 10317	n:20000
KS ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
TRIO   20000 perm   7 sec   (3039 perm/sec)   p_kst 9.060000e-02   p_cons 5.158500e-01   p_joint 1.564500e-01

Outputting figure to mutsig2_images.part000000000182/TRIO.15_9522_20000_0.0906_0.51585_0.15645.png
                gene_name: TRIO
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 14 percent done.
TRPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
KS ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
TRPM2   10000 perm   3 sec   (3938 perm/sec)   p_kst 9.007000e-01   p_cons 6.781000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRPM2.15_4640_10000_0.9007_0.6781_1.png
                gene_name: TRPM2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
TRPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
TRPC4   10000 perm   2 sec   (5106 perm/sec)   p_kst 2.746000e-01   p_cons 1.286000e-01   p_joint 2.275000e-01

Joint ci ratio: 5.150945e-02	ci left: 2.187326e-01	ci right 2.303475e-01	k: 4490	n:20000
Cons ci ratio: 7.729207e-02	ci left: 1.095285e-01	ci right 1.183841e-01	k: 2278	n:20000
KS ci ratio: 4.730319e-02	ci left: 2.495160e-01	ci right 2.616552e-01	k: 5111	n:20000
TRPC4   20000 perm   4 sec   (4626 perm/sec)   p_kst 2.555500e-01   p_cons 1.139000e-01   p_joint 2.245000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4.14_2989_20000_0.25555_0.1139_0.2245.png
                gene_name: TRPC4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
TRPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
Cons ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
KS ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
TRPA1   10000 perm   2 sec   (4371 perm/sec)   p_kst 1.834000e-01   p_cons 8.810000e-02   p_joint 1.453000e-01

Joint ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
Cons ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
KS ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
TRPA1   20000 perm   5 sec   (4005 perm/sec)   p_kst 1.794000e-01   p_cons 8.880000e-02   p_joint 1.051500e-01

Outputting figure to mutsig2_images.part000000000182/TRPA1.13_3468_20000_0.1794_0.0888_0.10515.png
                gene_name: TRPA1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
TRPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
TRPC6   10000 perm   2 sec   (4895 perm/sec)   p_kst 2.140000e-02   p_cons 2.389000e-01   p_joint 3.040000e-02

Joint ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
Cons ci ratio: 5.032577e-02	ci left: 2.268580e-01	ci right 2.386198e-01	k: 4654	n:20000
KS ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
TRPC6   20000 perm   5 sec   (4424 perm/sec)   p_kst 2.255000e-02   p_cons 2.327000e-01   p_joint 4.995000e-02

Joint ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
Cons ci ratio: 4.105073e-02	ci left: 2.282919e-01	ci right 2.378932e-01	k: 6992	n:30000
KS ci ratio: 1.441188e-01	ci left: 2.232982e-02	ci right 2.582984e-02	k: 721	n:30000
TRPC6   30000 perm   7 sec   (4225 perm/sec)   p_kst 2.403333e-02   p_cons 2.330667e-01   p_joint 5.343333e-02

Joint ci ratio: 1.140215e-01	ci left: 2.706128e-02	ci right 3.035761e-02	k: 1147	n:40000
Cons ci ratio: 3.655146e-02	ci left: 2.192265e-01	ci right 2.274137e-01	k: 8932	n:40000
KS ci ratio: 1.272475e-01	ci left: 2.169850e-02	ci right 2.467128e-02	k: 926	n:40000
TRPC6   40000 perm   10 sec   (4105 perm/sec)   p_kst 2.315000e-02   p_cons 2.233000e-01   p_joint 2.867500e-02

Joint ci ratio: 8.448374e-02	ci left: 3.953335e-02	ci right 4.304016e-02	k: 2063	n:50000
Cons ci ratio: 3.264796e-02	ci left: 2.201330e-01	ci right 2.274591e-01	k: 11189	n:50000
KS ci ratio: 1.161306e-01	ci left: 2.098468e-02	ci right 2.359120e-02	k: 1113	n:50000
TRPC6   50000 perm   12 sec   (4014 perm/sec)   p_kst 2.226000e-02   p_cons 2.237800e-01   p_joint 4.126000e-02

Joint ci ratio: 7.797731e-02	ci left: 3.883847e-02	ci right 4.200618e-02	k: 2424	n:60000
Cons ci ratio: 2.976769e-02	ci left: 2.208680e-01	ci right 2.275587e-01	k: 13452	n:60000
KS ci ratio: 1.064941e-01	ci left: 2.090607e-02	ci right 2.327381e-02	k: 1324	n:60000
TRPC6   60000 perm   15 sec   (3935 perm/sec)   p_kst 2.206667e-02   p_cons 2.242000e-01   p_joint 4.040000e-02

Joint ci ratio: 7.637113e-02	ci left: 3.488448e-02	ci right 3.766841e-02	k: 2538	n:70000
Cons ci ratio: 2.764717e-02	ci left: 2.200203e-01	ci right 2.262027e-01	k: 15617	n:70000
KS ci ratio: 9.931407e-02	ci left: 2.068911e-02	ci right 2.286507e-02	k: 1523	n:70000
TRPC6   70000 perm   18 sec   (3860 perm/sec)   p_kst 2.175714e-02   p_cons 2.231000e-01   p_joint 3.625714e-02

Outputting figure to mutsig2_images.part000000000182/TRPC6.13_2848_70000_0.021757_0.2231_0.036257.png
                gene_name: TRPC6
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 20 percent done.
TRIML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
Cons ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
KS ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
TRIML1   10000 perm   2 sec   (5447 perm/sec)   p_kst 3.953000e-01   p_cons 3.311000e-01   p_joint 5.409000e-01

Outputting figure to mutsig2_images.part000000000182/TRIML1.12_1431_10000_0.3953_0.3311_0.5409.png
                gene_name: TRIML1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 22 percent done.
TRPM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
TRPM8   10000 perm   2 sec   (5017 perm/sec)   p_kst 5.828000e-01   p_cons 1.900000e-02   p_joint 8.340000e-02

Joint ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
Cons ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
KS ci ratio: 2.303617e-02	ci left: 5.845995e-01	ci right 5.982739e-01	k: 11829	n:20000
TRPM8   20000 perm   4 sec   (4558 perm/sec)   p_kst 5.914500e-01   p_cons 2.040000e-02   p_joint 1.067500e-01

Joint ci ratio: 7.499583e-02	ci left: 8.032787e-02	ci right 8.661974e-02	k: 2503	n:30000
Cons ci ratio: 1.557932e-01	ci left: 1.905463e-02	ci right 2.230579e-02	k: 619	n:30000
KS ci ratio: 1.897778e-02	ci left: 5.815371e-01	ci right 5.927127e-01	k: 17614	n:30000
TRPM8   30000 perm   7 sec   (4383 perm/sec)   p_kst 5.871333e-01   p_cons 2.063333e-02   p_joint 8.343333e-02

Joint ci ratio: 6.287190e-02	ci left: 8.578338e-02	ci right 9.137652e-02	k: 3542	n:40000
Cons ci ratio: 1.360745e-01	ci left: 1.894039e-02	ci right 2.172985e-02	k: 812	n:40000
KS ci ratio: 1.638488e-02	ci left: 5.837839e-01	ci right 5.934532e-01	k: 23545	n:40000
TRPM8   40000 perm   9 sec   (4272 perm/sec)   p_kst 5.886250e-01   p_cons 2.030000e-02   p_joint 8.855000e-02

Joint ci ratio: 5.606620e-02	ci left: 8.655756e-02	ci right 9.157027e-02	k: 4452	n:50000
Cons ci ratio: 1.208769e-01	ci left: 1.935346e-02	ci right 2.186263e-02	k: 1029	n:50000
KS ci ratio: 1.465169e-02	ci left: 5.844119e-01	ci right 5.930578e-01	k: 29437	n:50000
TRPM8   50000 perm   12 sec   (4169 perm/sec)   p_kst 5.887400e-01   p_cons 2.058000e-02   p_joint 8.904000e-02

Joint ci ratio: 5.345075e-02	ci left: 8.006353e-02	ci right 8.447698e-02	k: 4935	n:60000
Cons ci ratio: 1.111280e-01	ci left: 1.918650e-02	ci right 2.146023e-02	k: 1218	n:60000
KS ci ratio: 1.343203e-02	ci left: 5.827307e-01	ci right 5.906276e-01	k: 35201	n:60000
TRPM8   60000 perm   15 sec   (4085 perm/sec)   p_kst 5.866833e-01   p_cons 2.030000e-02   p_joint 8.225000e-02

Joint ci ratio: 5.079812e-02	ci left: 7.640498e-02	ci right 8.040148e-02	k: 5487	n:70000
Cons ci ratio: 1.035995e-01	ci left: 1.900352e-02	ci right 2.109368e-02	k: 1402	n:70000
KS ci ratio: 1.245798e-02	ci left: 5.821546e-01	ci right 5.894668e-01	k: 41007	n:70000
TRPM8   70000 perm   17 sec   (4009 perm/sec)   p_kst 5.858143e-01   p_cons 2.002857e-02   p_joint 7.838571e-02

Joint ci ratio: 4.438867e-02	ci left: 8.684992e-02	ci right 9.080495e-02	k: 7105	n:80000
Cons ci ratio: 9.676790e-02	ci left: 1.912647e-02	ci right 2.108355e-02	k: 1607	n:80000
KS ci ratio: 1.166545e-02	ci left: 5.818893e-01	ci right 5.887296e-01	k: 46825	n:80000
TRPM8   80000 perm   20 sec   (3928 perm/sec)   p_kst 5.853125e-01   p_cons 2.008750e-02   p_joint 8.881250e-02

Outputting figure to mutsig2_images.part000000000182/TRPM8.12_3411_80000_0.58531_0.020088_0.088813.png
                gene_name: TRPM8
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.091 

Current progress: 23 percent done.
TRPV5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
Cons ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
KS ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
TRPV5   10000 perm   2 sec   (4879 perm/sec)   p_kst 7.123000e-01   p_cons 4.537000e-01   p_joint 7.851000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV5.12_2250_10000_0.7123_0.4537_0.7851.png
                gene_name: TRPV5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 25 percent done.
TRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
TRO   10000 perm   2 sec   (4754 perm/sec)   p_kst 4.889000e-01   p_cons 2.932000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000182/TRO.10_4479_10000_0.4889_0.2932_0.6035.png
                gene_name: TRO
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 27 percent done.
TRIML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
TRIML2   10000 perm   2 sec   (5529 perm/sec)   p_kst 7.664000e-01   p_cons 1.977000e-01   p_joint 6.435000e-01

Outputting figure to mutsig2_images.part000000000182/TRIML2.9_1192_10000_0.7664_0.1977_0.6435.png
                gene_name: TRIML2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 28 percent done.
TRPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
Cons ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
KS ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
TRPC1   10000 perm   2 sec   (4979 perm/sec)   p_kst 4.562000e-01   p_cons 2.751000e-01   p_joint 3.913000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC1.9_2328_10000_0.4562_0.2751_0.3913.png
                gene_name: TRPC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 30 percent done.
TRPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
Cons ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
KS ci ratio: 4.534601e-02	ci left: 4.178757e-01	ci right 4.373665e-01	k: 4276	n:10000
TRPC3   10000 perm   2 sec   (5269 perm/sec)   p_kst 4.276000e-01   p_cons 4.969000e-01   p_joint 6.736000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC3.9_2814_10000_0.4276_0.4969_0.6736.png
                gene_name: TRPC3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 31 percent done.
TSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
Cons ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
KS ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
TSC1   10000 perm   2 sec   (4752 perm/sec)   p_kst 1.702000e-01   p_cons 7.420000e-01   p_joint 4.001000e-01

Outputting figure to mutsig2_images.part000000000182/TSC1.9_3579_10000_0.1702_0.742_0.4001.png
                gene_name: TSC1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
TRIOBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
Cons ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KS ci ratio: 3.933545e-02	ci left: 4.883520e-01	ci right 5.080491e-01	k: 4982	n:10000
TRIOBP   10000 perm   3 sec   (3889 perm/sec)   p_kst 4.982000e-01   p_cons 6.567000e-01   p_joint 7.231000e-01

Outputting figure to mutsig2_images.part000000000182/TRIOBP.8_7484_10000_0.4982_0.6567_0.7231.png
                gene_name: TRIOBP
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 34 percent done.
TRPC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
Cons ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
KS ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
TRPC7   10000 perm   2 sec   (5344 perm/sec)   p_kst 5.183000e-01   p_cons 4.081000e-01   p_joint 6.476000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC7.8_2637_10000_0.5183_0.4081_0.6476.png
                gene_name: TRPC7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 36 percent done.
TRPM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
Cons ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
KS ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
TRPM4   10000 perm   2 sec   (4531 perm/sec)   p_kst 4.868000e-01   p_cons 3.233000e-01   p_joint 5.611000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM4.8_3745_10000_0.4868_0.3233_0.5611.png
                gene_name: TRPM4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
TRPV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
Cons ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
KS ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
TRPV6   10000 perm   2 sec   (5176 perm/sec)   p_kst 5.923000e-01   p_cons 4.607000e-01   p_joint 6.556000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV6.8_2238_10000_0.5923_0.4607_0.6556.png
                gene_name: TRPV6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 39 percent done.
TRPV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
KS ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
TRPV2   10000 perm   2 sec   (5158 perm/sec)   p_kst 6.540000e-01   p_cons 9.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRPV2.7_2351_10000_0.654_0.9817_1.png
                gene_name: TRPV2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
TRIM72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
Cons ci ratio: 9.461386e-02	ci left: 1.395251e-01	ci right 1.534815e-01	k: 1464	n:10000
KS ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
TRIM72   10000 perm   2 sec   (5340 perm/sec)   p_kst 5.000000e-03   p_cons 1.464000e-01   p_joint 2.780000e-02

Joint ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
Cons ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
KS ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
TRIM72   20000 perm   4 sec   (4853 perm/sec)   p_kst 5.900000e-03   p_cons 1.564500e-01   p_joint 1.950000e-02

Joint ci ratio: 1.488334e-01	ci left: 2.091575e-02	ci right 2.431090e-02	k: 677	n:30000
Cons ci ratio: 5.620159e-02	ci left: 1.355978e-01	ci right 1.434721e-01	k: 4185	n:30000
KS ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
TRIM72   30000 perm   6 sec   (4657 perm/sec)   p_kst 5.966667e-03   p_cons 1.395000e-01   p_joint 2.256667e-02

Joint ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
Cons ci ratio: 4.863839e-02	ci left: 1.362916e-01	ci right 1.431108e-01	k: 5587	n:40000
KS ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
TRIM72   40000 perm   9 sec   (4523 perm/sec)   p_kst 5.800000e-03   p_cons 1.396750e-01   p_joint 1.882500e-02

Joint ci ratio: 1.348472e-01	ci left: 1.549822e-02	ci right 1.775840e-02	k: 830	n:50000
Cons ci ratio: 4.352530e-02	ci left: 1.365336e-01	ci right 1.426283e-01	k: 6978	n:50000
KS ci ratio: 2.275547e-01	ci left: 5.228668e-03	ci right 6.589658e-03	k: 294	n:50000
TRIM72   50000 perm   11 sec   (4417 perm/sec)   p_kst 5.880000e-03   p_cons 1.395600e-01   p_joint 1.660000e-02

Joint ci ratio: 1.443996e-01	ci left: 1.125657e-02	ci right 1.302442e-02	k: 727	n:60000
Cons ci ratio: 3.972696e-02	ci left: 1.368360e-01	ci right 1.423989e-01	k: 8376	n:60000
KS ci ratio: 2.083212e-01	ci left: 5.255462e-03	ci right 6.493069e-03	k: 351	n:60000
TRIM72   60000 perm   14 sec   (4319 perm/sec)   p_kst 5.850000e-03   p_cons 1.396000e-01   p_joint 1.211667e-02

Joint ci ratio: 1.499265e-01	ci left: 8.945919e-03	ci right 1.040944e-02	k: 676	n:70000
Cons ci ratio: 3.483150e-02	ci left: 1.505391e-01	ci right 1.558897e-01	k: 10724	n:70000
KS ci ratio: 1.949482e-01	ci left: 5.182916e-03	ci right 6.315788e-03	k: 401	n:70000
TRIM72   70000 perm   17 sec   (4237 perm/sec)   p_kst 5.728571e-03   p_cons 1.532000e-01   p_joint 9.657143e-03

Joint ci ratio: 1.458393e-01	ci left: 8.296935e-03	ci right 9.614046e-03	k: 715	n:80000
Cons ci ratio: 3.249295e-02	ci left: 1.514182e-01	ci right 1.564319e-01	k: 12313	n:80000
KS ci ratio: 1.836543e-01	ci left: 5.142349e-03	ci right 6.193988e-03	k: 452	n:80000
TRIM72   80000 perm   19 sec   (4160 perm/sec)   p_kst 5.650000e-03   p_cons 1.539125e-01   p_joint 8.937500e-03

Joint ci ratio: 1.438018e-01	ci left: 7.599732e-03	ci right 8.787850e-03	k: 736	n:90000
Cons ci ratio: 3.155009e-02	ci left: 1.440963e-01	ci right 1.487265e-01	k: 13176	n:90000
KS ci ratio: 1.725773e-01	ci left: 5.207958e-03	ci right 6.202086e-03	k: 512	n:90000
TRIM72   90000 perm   22 sec   (4086 perm/sec)   p_kst 5.688889e-03   p_cons 1.464000e-01   p_joint 8.177778e-03

Joint ci ratio: 1.393599e-01	ci left: 7.302678e-03	ci right 8.406155e-03	k: 784	n:100000
Cons ci ratio: 2.991563e-02	ci left: 1.443435e-01	ci right 1.487371e-01	k: 14653	n:100000
KS ci ratio: 1.648891e-01	ci left: 5.156465e-03	ci right 6.092561e-03	k: 561	n:100000
TRIM72   100000 perm   25 sec   (4017 perm/sec)   p_kst 5.610000e-03   p_cons 1.465300e-01   p_joint 7.840000e-03

Joint ci ratio: 1.430333e-01	ci left: 6.296539e-03	ci right 7.275192e-03	k: 745	n:110000
Cons ci ratio: 2.847626e-02	ci left: 1.448580e-01	ci right 1.490516e-01	k: 16164	n:110000
KS ci ratio: 1.572412e-01	ci left: 5.176278e-03	ci right 6.068274e-03	k: 617	n:110000
TRIM72   110000 perm   28 sec   (3947 perm/sec)   p_kst 5.609091e-03   p_cons 1.469455e-01   p_joint 6.772727e-03

Joint ci ratio: 1.173801e-01	ci left: 8.667533e-03	ci right 9.756384e-03	k: 1104	n:120000
Cons ci ratio: 2.728168e-02	ci left: 1.447854e-01	ci right 1.487983e-01	k: 17614	n:120000
KS ci ratio: 1.496768e-01	ci left: 5.257800e-03	ci right 6.116354e-03	k: 681	n:120000
TRIM72   120000 perm   31 sec   (3884 perm/sec)   p_kst 5.675000e-03   p_cons 1.467833e-01   p_joint 9.200000e-03

Joint ci ratio: 1.199666e-01	ci left: 7.657214e-03	ci right 8.641838e-03	k: 1058	n:130000
Cons ci ratio: 2.622180e-02	ci left: 1.447655e-01	ci right 1.486195e-01	k: 19069	n:130000
KS ci ratio: 1.434959e-01	ci left: 5.297976e-03	ci right 6.124307e-03	k: 741	n:130000
TRIM72   130000 perm   34 sec   (3818 perm/sec)   p_kst 5.700000e-03   p_cons 1.466846e-01   p_joint 8.138462e-03

Joint ci ratio: 1.102001e-01	ci left: 8.463283e-03	ci right 9.457215e-03	k: 1253	n:140000
Cons ci ratio: 2.526142e-02	ci left: 1.449002e-01	ci right 1.486145e-01	k: 20545	n:140000
KS ci ratio: 1.326399e-01	ci left: 5.788598e-03	ci right 6.617768e-03	k: 867	n:140000
TRIM72   140000 perm   37 sec   (3756 perm/sec)   p_kst 6.192857e-03   p_cons 1.467500e-01   p_joint 8.950000e-03

Joint ci ratio: 1.095308e-01	ci left: 8.002695e-03	ci right 8.936454e-03	k: 1269	n:150000
Cons ci ratio: 2.438186e-02	ci left: 1.451982e-01	ci right 1.487887e-01	k: 22048	n:150000
KS ci ratio: 1.291949e-01	ci left: 5.705747e-03	ci right 6.500193e-03	k: 914	n:150000
TRIM72   150000 perm   41 sec   (3696 perm/sec)   p_kst 6.093333e-03   p_cons 1.469867e-01   p_joint 8.460000e-03

Joint ci ratio: 1.095601e-01	ci left: 7.502420e-03	ci right 8.378052e-03	k: 1269	n:160000
Cons ci ratio: 2.359467e-02	ci left: 1.453926e-01	ci right 1.488702e-01	k: 23540	n:160000
KS ci ratio: 1.245161e-01	ci left: 5.772769e-03	ci right 6.545291e-03	k: 984	n:160000
TRIM72   160000 perm   44 sec   (3641 perm/sec)   p_kst 6.150000e-03   p_cons 1.471250e-01   p_joint 7.931250e-03

Joint ci ratio: 1.179711e-01	ci left: 6.072102e-03	ci right 6.838993e-03	k: 1096	n:170000
Cons ci ratio: 2.284486e-02	ci left: 1.459404e-01	ci right 1.493187e-01	k: 25096	n:170000
KS ci ratio: 1.206571e-01	ci left: 5.798126e-03	ci right 6.548277e-03	k: 1048	n:170000
TRIM72   170000 perm   47 sec   (3588 perm/sec)   p_kst 6.164706e-03   p_cons 1.476235e-01   p_joint 6.447059e-03

Joint ci ratio: 1.144259e-01	ci left: 6.106962e-03	ci right 6.853511e-03	k: 1165	n:180000
Cons ci ratio: 2.217298e-02	ci left: 1.463072e-01	ci right 1.495931e-01	k: 26630	n:180000
KS ci ratio: 1.167147e-01	ci left: 5.864145e-03	ci right 6.596339e-03	k: 1120	n:180000
TRIM72   180000 perm   51 sec   (3536 perm/sec)   p_kst 6.222222e-03   p_cons 1.479444e-01   p_joint 6.472222e-03

Joint ci ratio: 1.056022e-01	ci left: 6.819615e-03	ci right 7.585010e-03	k: 1367	n:190000
Cons ci ratio: 2.158994e-02	ci left: 1.462541e-01	ci right 1.494514e-01	k: 28091	n:190000
KS ci ratio: 1.180656e-01	ci left: 5.427718e-03	ci right 6.113809e-03	k: 1095	n:190000
TRIM72   190000 perm   54 sec   (3487 perm/sec)   p_kst 5.763158e-03   p_cons 1.478474e-01   p_joint 7.194737e-03

Joint ci ratio: 1.047763e-01	ci left: 6.585699e-03	ci right 7.318701e-03	k: 1389	n:200000
Cons ci ratio: 2.106104e-02	ci left: 1.460829e-01	ci right 1.491973e-01	k: 29527	n:200000
KS ci ratio: 1.152614e-01	ci left: 5.418452e-03	ci right 6.085996e-03	k: 1149	n:200000
TRIM72   200000 perm   58 sec   (3440 perm/sec)   p_kst 5.745000e-03   p_cons 1.476350e-01   p_joint 6.945000e-03

Joint ci ratio: 9.594796e-02	ci left: 7.507187e-03	ci right 8.268396e-03	k: 1655	n:210000
Cons ci ratio: 2.057583e-02	ci left: 1.458483e-01	ci right 1.488852e-01	k: 30946	n:210000
KS ci ratio: 1.125540e-01	ci left: 5.419500e-03	ci right 6.070448e-03	k: 1205	n:210000
TRIM72   210000 perm   62 sec   (3394 perm/sec)   p_kst 5.738095e-03   p_cons 1.473619e-01   p_joint 7.880952e-03

Joint ci ratio: 9.593612e-02	ci left: 7.170328e-03	ci right 7.897284e-03	k: 1656	n:220000
Cons ci ratio: 2.012667e-02	ci left: 1.455861e-01	ci right 1.485505e-01	k: 32354	n:220000
KS ci ratio: 1.106477e-01	ci left: 5.358729e-03	ci right 5.990766e-03	k: 1247	n:220000
TRIM72   220000 perm   66 sec   (3349 perm/sec)   p_kst 5.668182e-03   p_cons 1.470636e-01   p_joint 7.527273e-03

Joint ci ratio: 9.606882e-02	ci left: 6.841545e-03	ci right 7.536179e-03	k: 1652	n:230000
Cons ci ratio: 1.967189e-02	ci left: 1.457760e-01	ci right 1.486764e-01	k: 33861	n:230000
KS ci ratio: 1.078722e-01	ci left: 5.400633e-03	ci right 6.020619e-03	k: 1312	n:230000
TRIM72   230000 perm   70 sec   (3304 perm/sec)   p_kst 5.704348e-03   p_cons 1.472217e-01   p_joint 7.182609e-03

Joint ci ratio: 9.535987e-02	ci left: 6.658123e-03	ci right 7.328866e-03	k: 1677	n:240000
Cons ci ratio: 1.926898e-02	ci left: 1.456602e-01	ci right 1.484983e-01	k: 35298	n:240000
KS ci ratio: 1.052956e-01	ci left: 5.439226e-03	ci right 6.047804e-03	k: 1377	n:240000
TRIM72   240000 perm   74 sec   (3262 perm/sec)   p_kst 5.737500e-03   p_cons 1.470750e-01   p_joint 6.987500e-03

Joint ci ratio: 9.335034e-02	ci left: 6.676911e-03	ci right 7.334597e-03	k: 1750	n:250000
Cons ci ratio: 1.888442e-02	ci left: 1.456260e-01	ci right 1.484062e-01	k: 36753	n:250000
KS ci ratio: 1.035468e-01	ci left: 5.404742e-03	ci right 5.998806e-03	k: 1424	n:250000
TRIM72   250000 perm   78 sec   (3221 perm/sec)   p_kst 5.696000e-03   p_cons 1.470120e-01   p_joint 7.000000e-03

Joint ci ratio: 9.233335e-02	ci left: 6.566606e-03	ci right 7.205999e-03	k: 1789	n:260000
Cons ci ratio: 1.851292e-02	ci left: 1.457175e-01	ci right 1.484442e-01	k: 38240	n:260000
KS ci ratio: 1.021618e-01	ci left: 5.343000e-03	ci right 5.921950e-03	k: 1463	n:260000
TRIM72   260000 perm   82 sec   (3179 perm/sec)   p_kst 5.626923e-03   p_cons 1.470769e-01   p_joint 6.880769e-03

Joint ci ratio: 8.064920e-02	ci left: 8.324102e-03	ci right 9.027247e-03	k: 2341	n:270000
Cons ci ratio: 1.816465e-02	ci left: 1.457733e-01	ci right 1.484491e-01	k: 39719	n:270000
KS ci ratio: 1.004953e-01	ci left: 5.321990e-03	ci right 5.888702e-03	k: 1512	n:270000
TRIM72   270000 perm   86 sec   (3138 perm/sec)   p_kst 5.600000e-03   p_cons 1.471074e-01   p_joint 8.670370e-03

Joint ci ratio: 8.069656e-02	ci left: 8.019763e-03	ci right 8.697615e-03	k: 2339	n:280000
Cons ci ratio: 1.784549e-02	ci left: 1.456832e-01	ci right 1.483099e-01	k: 41158	n:280000
KS ci ratio: 9.855930e-02	ci left: 5.340873e-03	ci right 5.898006e-03	k: 1572	n:280000
TRIM72   280000 perm   90 sec   (3099 perm/sec)   p_kst 5.614286e-03   p_cons 1.469929e-01   p_joint 8.353571e-03

Outputting figure to mutsig2_images.part000000000182/TRIM72.6_1458_280000_0.0056143_0.14699_0.0083536.png
                gene_name: TRIM72
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0056 
        ci_ks_bounds_left: 0.0053 
       ci_ks_bounds_right: 0.0059 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0087 

Current progress: 42 percent done.
TRIP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
TRIP13   10000 perm   2 sec   (5322 perm/sec)   p_kst 4.474000e-01   p_cons 1.398000e-01   p_joint 2.420000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP13.6_1355_10000_0.4474_0.1398_0.242.png
                gene_name: TRIP13
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
TRYX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
Cons ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
KS ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
TRYX3   10000 perm   2 sec   (5770 perm/sec)   p_kst 1.359000e-01   p_cons 5.309000e-01   p_joint 1.966000e-01

Outputting figure to mutsig2_images.part000000000182/TRYX3.6_746_10000_0.1359_0.5309_0.1966.png
                gene_name: TRYX3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 45 percent done.
TSC22D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
Cons ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
KS ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
TSC22D1   10000 perm   2 sec   (4917 perm/sec)   p_kst 1.867000e-01   p_cons 9.537000e-01   p_joint 3.484000e-01

Outputting figure to mutsig2_images.part000000000182/TSC22D1.6_3363_10000_0.1867_0.9537_0.3484.png
                gene_name: TSC22D1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 47 percent done.
TSG101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
Cons ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
KS ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
TSG101   10000 perm   2 sec   (5834 perm/sec)   p_kst 3.893000e-01   p_cons 5.847000e-01   p_joint 5.042000e-01

Outputting figure to mutsig2_images.part000000000182/TSG101.6_1213_10000_0.3893_0.5847_0.5042.png
                gene_name: TSG101
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 48 percent done.
TRIM6-TRIM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
KS ci ratio: 2.346460e-02	ci left: 7.274446e-01	ci right 7.448176e-01	k: 7362	n:10000
TRIM6-TRIM34   10000 perm   2 sec   (5198 perm/sec)   p_kst 7.362000e-01   p_cons 8.876000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM6-TRIM34.5_2558_10000_0.7362_0.8876_1.png
                gene_name: TRIM6-TRIM34
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
TRIM60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
Cons ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
KS ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
TRIM60   10000 perm   2 sec   (5852 perm/sec)   p_kst 6.320000e-01   p_cons 3.242000e-01   p_joint 7.419000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM60.5_1420_10000_0.632_0.3242_0.7419.png
                gene_name: TRIM60
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 52 percent done.
TRIM69
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.075757e-02	ci left: 6.092978e-01	ci right 6.284329e-01	k: 6189	n:10000
Cons ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
KS ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
TRIM69   10000 perm   2 sec   (5858 perm/sec)   p_kst 7.897000e-01   p_cons 2.239000e-01   p_joint 6.189000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM69.4_1531_10000_0.7897_0.2239_0.6189.png
                gene_name: TRIM69
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 53 percent done.
TRMT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
TRMT2B   10000 perm   2 sec   (6153 perm/sec)   p_kst 2.740000e-01   p_cons 5.600000e-03   p_joint 3.690000e-02

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
KS ci ratio: 4.596184e-02	ci left: 2.605307e-01	ci right 2.728372e-01	k: 5333	n:20000
TRMT2B   20000 perm   4 sec   (5532 perm/sec)   p_kst 2.666500e-01   p_cons 5.700000e-03   p_joint 1.650000e-02

Joint ci ratio: 1.932223e-01	ci left: 1.222473e-02	ci right 1.487072e-02	k: 405	n:30000
Cons ci ratio: 2.954537e-01	ci left: 4.972185e-03	ci right 6.725594e-03	k: 174	n:30000
KS ci ratio: 3.691087e-02	ci left: 2.681631e-01	ci right 2.782808e-01	k: 8196	n:30000
TRMT2B   30000 perm   6 sec   (5263 perm/sec)   p_kst 2.732000e-01   p_cons 5.800000e-03   p_joint 1.350000e-02

Joint ci ratio: 1.053982e-01	ci left: 3.166062e-02	ci right 3.520754e-02	k: 1336	n:40000
Cons ci ratio: 2.466476e-01	ci left: 5.501199e-03	ci right 7.071772e-03	k: 250	n:40000
KS ci ratio: 3.210791e-02	ci left: 2.670962e-01	ci right 2.758370e-01	k: 10858	n:40000
TRMT2B   40000 perm   8 sec   (5097 perm/sec)   p_kst 2.714500e-01   p_cons 6.250000e-03   p_joint 3.340000e-02

Joint ci ratio: 1.052377e-01	ci left: 2.557733e-02	ci right 2.843794e-02	k: 1349	n:50000
Cons ci ratio: 2.205205e-01	ci left: 5.587458e-03	ci right 6.990790e-03	k: 313	n:50000
KS ci ratio: 2.854604e-02	ci left: 2.699346e-01	ci right 2.777717e-01	k: 13692	n:50000
TRMT2B   50000 perm   10 sec   (4961 perm/sec)   p_kst 2.738400e-01   p_cons 6.260000e-03   p_joint 2.698000e-02

Joint ci ratio: 1.036119e-01	ci left: 2.209146e-02	ci right 2.452162e-02	k: 1397	n:60000
Cons ci ratio: 2.031601e-01	ci left: 5.540088e-03	ci right 6.808392e-03	k: 369	n:60000
KS ci ratio: 2.613837e-02	ci left: 2.690729e-01	ci right 2.762158e-01	k: 16358	n:60000
TRMT2B   60000 perm   12 sec   (4831 perm/sec)   p_kst 2.726333e-01   p_cons 6.150000e-03   p_joint 2.328333e-02

Joint ci ratio: 1.039022e-01	ci left: 1.889214e-02	ci right 2.097649e-02	k: 1394	n:70000
Cons ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
KS ci ratio: 2.420162e-02	ci left: 2.693036e-01	ci right 2.759153e-01	k: 19082	n:70000
TRMT2B   70000 perm   15 sec   (4712 perm/sec)   p_kst 2.726000e-01   p_cons 6.171429e-03   p_joint 1.991429e-02

Joint ci ratio: 1.080450e-01	ci left: 1.531218e-02	ci right 1.707316e-02	k: 1294	n:80000
Cons ci ratio: 1.751107e-01	ci left: 5.679737e-03	ci right 6.781532e-03	k: 497	n:80000
KS ci ratio: 2.263436e-02	ci left: 2.695911e-01	ci right 2.757754e-01	k: 21814	n:80000
TRMT2B   80000 perm   17 sec   (4616 perm/sec)   p_kst 2.726750e-01   p_cons 6.212500e-03   p_joint 1.617500e-02

Joint ci ratio: 9.883630e-02	ci left: 1.632809e-02	ci right 1.803657e-02	k: 1545	n:90000
Cons ci ratio: 1.643963e-01	ci left: 5.761515e-03	ci right 6.804025e-03	k: 564	n:90000
KS ci ratio: 2.180670e-02	ci left: 2.612994e-01	ci right 2.670714e-01	k: 23776	n:90000
TRMT2B   90000 perm   20 sec   (4527 perm/sec)   p_kst 2.641778e-01   p_cons 6.266667e-03   p_joint 1.716667e-02

Joint ci ratio: 9.161135e-02	ci left: 1.715565e-02	ci right 1.881247e-02	k: 1797	n:100000
Cons ci ratio: 1.656317e-01	ci left: 5.108523e-03	ci right 6.040508e-03	k: 556	n:100000
KS ci ratio: 2.034209e-02	ci left: 2.680275e-01	ci right 2.735458e-01	k: 27078	n:100000
TRMT2B   100000 perm   23 sec   (4436 perm/sec)   p_kst 2.707800e-01   p_cons 5.560000e-03   p_joint 1.797000e-02

Joint ci ratio: 9.592445e-02	ci left: 1.423669e-02	ci right 1.567996e-02	k: 1644	n:110000
Cons ci ratio: 1.563532e-01	ci left: 5.237430e-03	ci right 6.134389e-03	k: 624	n:110000
KS ci ratio: 1.935928e-02	ci left: 2.688915e-01	ci right 2.741569e-01	k: 29867	n:110000
TRMT2B   110000 perm   25 sec   (4345 perm/sec)   p_kst 2.715182e-01   p_cons 5.672727e-03   p_joint 1.494545e-02

Joint ci ratio: 8.897819e-02	ci left: 1.520796e-02	ci right 1.663224e-02	k: 1909	n:120000
Cons ci ratio: 1.507927e-01	ci left: 5.177583e-03	ci right 6.029910e-03	k: 671	n:120000
KS ci ratio: 1.856571e-02	ci left: 2.683536e-01	ci right 2.733908e-01	k: 32504	n:120000
TRMT2B   120000 perm   28 sec   (4260 perm/sec)   p_kst 2.708667e-01   p_cons 5.591667e-03   p_joint 1.590833e-02

Joint ci ratio: 8.595657e-02	ci left: 1.506886e-02	ci right 1.642979e-02	k: 2046	n:130000
Cons ci ratio: 1.440830e-01	ci left: 5.253474e-03	ci right 6.076504e-03	k: 735	n:130000
KS ci ratio: 1.786162e-02	ci left: 2.679178e-01	ci right 2.727540e-01	k: 35143	n:130000
TRMT2B   130000 perm   31 sec   (4182 perm/sec)   p_kst 2.703308e-01   p_cons 5.653846e-03   p_joint 1.573846e-02

Joint ci ratio: 7.586329e-02	ci left: 1.800383e-02	ci right 1.943049e-02	k: 2619	n:140000
Cons ci ratio: 1.298107e-01	ci left: 6.051168e-03	ci right 6.898039e-03	k: 905	n:140000
KS ci ratio: 1.721918e-02	ci left: 2.678395e-01	ci right 2.724986e-01	k: 37823	n:140000
TRMT2B   140000 perm   34 sec   (4114 perm/sec)   p_kst 2.701643e-01   p_cons 6.464286e-03   p_joint 1.870714e-02

Joint ci ratio: 7.632768e-02	ci left: 1.662001e-02	ci right 1.794541e-02	k: 2591	n:150000
Cons ci ratio: 1.251960e-01	ci left: 6.086640e-03	ci right 6.905945e-03	k: 973	n:150000
KS ci ratio: 1.664198e-02	ci left: 2.677611e-01	ci right 2.722612e-01	k: 40501	n:150000
TRMT2B   150000 perm   37 sec   (4049 perm/sec)   p_kst 2.700067e-01   p_cons 6.486667e-03   p_joint 1.727333e-02

Joint ci ratio: 8.218725e-02	ci left: 1.344225e-02	ci right 1.460046e-02	k: 2242	n:160000
Cons ci ratio: 1.211580e-01	ci left: 6.106019e-03	ci right 6.899522e-03	k: 1039	n:160000
KS ci ratio: 1.610335e-02	ci left: 2.680813e-01	ci right 2.724395e-01	k: 43241	n:160000
TRMT2B   160000 perm   40 sec   (3981 perm/sec)   p_kst 2.702562e-01   p_cons 6.493750e-03   p_joint 1.401250e-02

Joint ci ratio: 7.985558e-02	ci left: 1.341802e-02	ci right 1.453982e-02	k: 2375	n:170000
Cons ci ratio: 1.177014e-01	ci left: 6.100652e-03	ci right 6.869265e-03	k: 1101	n:170000
KS ci ratio: 1.563621e-02	ci left: 2.678026e-01	ci right 2.720288e-01	k: 45885	n:170000
TRMT2B   170000 perm   43 sec   (3918 perm/sec)   p_kst 2.699118e-01   p_cons 6.476471e-03   p_joint 1.397059e-02

Joint ci ratio: 7.815516e-02	ci left: 1.324434e-02	ci right 1.432696e-02	k: 2480	n:180000
Cons ci ratio: 1.143766e-01	ci left: 6.112359e-03	ci right 6.859225e-03	k: 1166	n:180000
KS ci ratio: 1.519571e-02	ci left: 2.678613e-01	ci right 2.719683e-01	k: 48584	n:180000
TRMT2B   180000 perm   47 sec   (3857 perm/sec)   p_kst 2.699111e-01   p_cons 6.477778e-03   p_joint 1.377778e-02

Joint ci ratio: 6.955517e-02	ci left: 1.586988e-02	ci right 1.701863e-02	k: 3123	n:190000
Cons ci ratio: 1.113184e-01	ci left: 6.123107e-03	ci right 6.849968e-03	k: 1231	n:190000
KS ci ratio: 1.480290e-02	ci left: 2.675846e-01	ci right 2.715804e-01	k: 51220	n:190000
TRMT2B   190000 perm   50 sec   (3799 perm/sec)   p_kst 2.695789e-01   p_cons 6.478947e-03   p_joint 1.643684e-02

Joint ci ratio: 6.426246e-02	ci left: 1.767770e-02	ci right 1.885632e-02	k: 3652	n:200000
Cons ci ratio: 1.152110e-01	ci left: 5.423309e-03	ci right 6.091139e-03	k: 1150	n:200000
KS ci ratio: 1.442476e-02	ci left: 2.677259e-01	ci right 2.716208e-01	k: 53934	n:200000
TRMT2B   200000 perm   53 sec   (3741 perm/sec)   p_kst 2.696700e-01   p_cons 5.750000e-03   p_joint 1.826000e-02

Joint ci ratio: 6.435370e-02	ci left: 1.680286e-02	ci right 1.792480e-02	k: 3645	n:210000
Cons ci ratio: 1.124134e-01	ci left: 5.433386e-03	ci right 6.085133e-03	k: 1208	n:210000
KS ci ratio: 1.407555e-02	ci left: 2.678169e-01	ci right 2.716180e-01	k: 56640	n:210000
TRMT2B   210000 perm   57 sec   (3685 perm/sec)   p_kst 2.697143e-01   p_cons 5.752381e-03   p_joint 1.735714e-02

Joint ci ratio: 6.648764e-02	ci left: 1.503711e-02	ci right 1.607571e-02	k: 3421	n:220000
Cons ci ratio: 1.102045e-01	ci left: 5.402935e-03	ci right 6.037467e-03	k: 1257	n:220000
KS ci ratio: 1.375767e-02	ci left: 2.676966e-01	ci right 2.714095e-01	k: 59301	n:220000
TRMT2B   220000 perm   61 sec   (3630 perm/sec)   p_kst 2.695500e-01   p_cons 5.713636e-03   p_joint 1.555000e-02

Joint ci ratio: 6.374022e-02	ci left: 1.566232e-02	ci right 1.669775e-02	k: 3720	n:230000
Cons ci ratio: 1.078309e-01	ci left: 5.404864e-03	ci right 6.025083e-03	k: 1313	n:230000
KS ci ratio: 1.364280e-02	ci left: 2.623338e-01	ci right 2.659417e-01	k: 60751	n:230000
TRMT2B   230000 perm   64 sec   (3577 perm/sec)   p_kst 2.641348e-01   p_cons 5.708696e-03   p_joint 1.617391e-02

Joint ci ratio: 6.319516e-02	ci left: 1.528026e-02	ci right 1.628148e-02	k: 3786	n:240000
Cons ci ratio: 1.054111e-01	ci left: 5.427054e-03	ci right 6.034977e-03	k: 1374	n:240000
KS ci ratio: 1.336764e-02	ci left: 2.620210e-01	ci right 2.655513e-01	k: 63308	n:240000
TRMT2B   240000 perm   68 sec   (3525 perm/sec)   p_kst 2.637833e-01   p_cons 5.725000e-03   p_joint 1.577500e-02

Joint ci ratio: 6.297105e-02	ci left: 1.478310e-02	ci right 1.574819e-02	k: 3815	n:250000
Cons ci ratio: 1.038035e-01	ci left: 5.377464e-03	ci right 5.970085e-03	k: 1417	n:250000
KS ci ratio: 1.308757e-02	ci left: 2.623527e-01	ci right 2.658128e-01	k: 66020	n:250000
TRMT2B   250000 perm   72 sec   (3474 perm/sec)   p_kst 2.640800e-01   p_cons 5.668000e-03   p_joint 1.526000e-02

Joint ci ratio: 5.905295e-02	ci left: 1.617300e-02	ci right 1.716089e-02	k: 4332	n:260000
Cons ci ratio: 1.021267e-01	ci left: 5.346748e-03	ci right 5.925894e-03	k: 1464	n:260000
KS ci ratio: 1.282781e-02	ci left: 2.625559e-01	ci right 2.659494e-01	k: 68705	n:260000
TRMT2B   260000 perm   76 sec   (3424 perm/sec)   p_kst 2.642500e-01   p_cons 5.630769e-03   p_joint 1.666154e-02

Joint ci ratio: 5.688269e-02	ci left: 1.679326e-02	ci right 1.778010e-02	k: 4666	n:270000
Cons ci ratio: 1.001299e-01	ci left: 5.361714e-03	ci right 5.930458e-03	k: 1523	n:270000
KS ci ratio: 1.259396e-02	ci left: 2.624045e-01	ci right 2.657339e-01	k: 71298	n:270000
TRMT2B   270000 perm   80 sec   (3376 perm/sec)   p_kst 2.640667e-01   p_cons 5.640741e-03   p_joint 1.728148e-02

Joint ci ratio: 5.706867e-02	ci left: 1.609828e-02	ci right 1.704748e-02	k: 4639	n:280000
Cons ci ratio: 9.818338e-02	ci left: 5.382681e-03	ci right 5.941911e-03	k: 1584	n:280000
KS ci ratio: 1.236449e-02	ci left: 2.625141e-01	ci right 2.657837e-01	k: 73961	n:280000
TRMT2B   280000 perm   84 sec   (3329 perm/sec)   p_kst 2.641464e-01   p_cons 5.657143e-03   p_joint 1.656786e-02

Outputting figure to mutsig2_images.part000000000182/TRMT2B.5_1563_280000_0.26415_0.0056571_0.016568.png
                gene_name: TRMT2B
               theta_stop: 0.098 
                    nperm: 280000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 55 percent done.
TRPV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
KS ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
TRPV3   10000 perm   2 sec   (5057 perm/sec)   p_kst 2.793000e-01   p_cons 9.780000e-02   p_joint 1.725000e-01

Joint ci ratio: 6.524207e-02	ci left: 1.478886e-01	ci right 1.579125e-01	k: 3057	n:20000
Cons ci ratio: 8.296989e-02	ci left: 9.621914e-02	ci right 1.045974e-01	k: 2007	n:20000
KS ci ratio: 4.618022e-02	ci left: 2.586946e-01	ci right 2.709739e-01	k: 5296	n:20000
TRPV3   20000 perm   4 sec   (4611 perm/sec)   p_kst 2.648000e-01   p_cons 1.003500e-01   p_joint 1.528500e-01

Outputting figure to mutsig2_images.part000000000182/TRPV3.5_2441_20000_0.2648_0.10035_0.15285.png
                gene_name: TRPV3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 56 percent done.
TSGA10IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
TSGA10IP   10000 perm   2 sec   (5702 perm/sec)   p_kst 2.263000e-01   p_cons 6.160000e-02   p_joint 9.320000e-02

Joint ci ratio: 7.561694e-02	ci left: 1.139531e-01	ci right 1.229581e-01	k: 2368	n:20000
Cons ci ratio: 1.072141e-01	ci left: 5.928153e-02	ci right 6.604631e-02	k: 1252	n:20000
KS ci ratio: 5.233669e-02	ci left: 2.132845e-01	ci right 2.247973e-01	k: 4380	n:20000
TSGA10IP   20000 perm   4 sec   (5137 perm/sec)   p_kst 2.190000e-01   p_cons 6.260000e-02   p_joint 1.184000e-01

Joint ci ratio: 6.154016e-02	ci left: 1.154551e-01	ci right 1.228189e-01	k: 3573	n:30000
Cons ci ratio: 8.750336e-02	ci left: 5.994991e-02	ci right 6.546848e-02	k: 1880	n:30000
KS ci ratio: 4.275997e-02	ci left: 2.141324e-01	ci right 2.235221e-01	k: 6564	n:30000
TSGA10IP   30000 perm   6 sec   (4907 perm/sec)   p_kst 2.188000e-01   p_cons 6.266667e-02   p_joint 1.191000e-01

Outputting figure to mutsig2_images.part000000000182/TSGA10IP.5_1703_30000_0.2188_0.062667_0.1191.png
                gene_name: TSGA10IP
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 58 percent done.
TRIM67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
KS ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
TRIM67   10000 perm   2 sec   (5870 perm/sec)   p_kst 1.475000e-01   p_cons 6.600000e-03   p_joint 4.250000e-02

Joint ci ratio: 1.264445e-01	ci left: 4.294396e-02	ci right 4.878899e-02	k: 916	n:20000
Cons ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
KS ci ratio: 6.525467e-02	ci left: 1.478393e-01	ci right 1.578618e-01	k: 3056	n:20000
TRIM67   20000 perm   4 sec   (5273 perm/sec)   p_kst 1.528000e-01   p_cons 6.450000e-03   p_joint 4.580000e-02

Joint ci ratio: 8.064878e-02	ci left: 7.004841e-02	ci right 7.596794e-02	k: 2189	n:30000
Cons ci ratio: 2.645252e-01	ci left: 6.305714e-03	ci right 8.258200e-03	k: 217	n:30000
KS ci ratio: 5.293009e-02	ci left: 1.504600e-01	ci right 1.586736e-01	k: 4636	n:30000
TRIM67   30000 perm   6 sec   (4993 perm/sec)   p_kst 1.545333e-01   p_cons 7.233333e-03   p_joint 7.296667e-02

Joint ci ratio: 8.366497e-02	ci left: 4.984426e-02	ci right 5.422106e-02	k: 2080	n:40000
Cons ci ratio: 2.293515e-01	ci left: 6.418461e-03	ci right 8.104261e-03	k: 289	n:40000
KS ci ratio: 4.592975e-02	ci left: 1.505002e-01	ci right 1.576001e-01	k: 6161	n:40000
TRIM67   40000 perm   8 sec   (4820 perm/sec)   p_kst 1.540250e-01   p_cons 7.225000e-03   p_joint 5.200000e-02

Joint ci ratio: 7.649474e-02	ci left: 4.798801e-02	ci right 5.182446e-02	k: 2494	n:50000
Cons ci ratio: 2.055676e-01	ci left: 6.477653e-03	ci right 7.980412e-03	k: 360	n:50000
KS ci ratio: 4.128223e-02	ci left: 1.496169e-01	ci right 1.559435e-01	k: 7638	n:50000
TRIM67   50000 perm   11 sec   (4695 perm/sec)   p_kst 1.527600e-01   p_cons 7.200000e-03   p_joint 4.988000e-02

Joint ci ratio: 7.465419e-02	ci left: 4.229084e-02	ci right 4.558679e-02	k: 2635	n:60000
Cons ci ratio: 1.861907e-01	ci left: 6.650328e-03	ci right 8.031302e-03	k: 439	n:60000
KS ci ratio: 3.771647e-02	ci left: 1.496815e-01	ci right 1.554521e-01	k: 9153	n:60000
TRIM67   60000 perm   13 sec   (4587 perm/sec)   p_kst 1.525500e-01   p_cons 7.316667e-03   p_joint 4.391667e-02

Joint ci ratio: 7.198338e-02	ci left: 3.917796e-02	ci right 4.211742e-02	k: 2844	n:70000
Cons ci ratio: 1.712625e-01	ci left: 6.792125e-03	ci right 8.077783e-03	k: 519	n:70000
KS ci ratio: 3.495282e-02	ci left: 1.496455e-01	ci right 1.549833e-01	k: 10661	n:70000
TRIM67   70000 perm   16 sec   (4496 perm/sec)   p_kst 1.523000e-01   p_cons 7.414286e-03   p_joint 4.062857e-02

Joint ci ratio: 7.072993e-02	ci left: 3.566567e-02	ci right 3.829304e-02	k: 2957	n:80000
Cons ci ratio: 1.607867e-01	ci left: 6.781776e-03	ci right 7.979366e-03	k: 589	n:80000
KS ci ratio: 3.275112e-02	ci left: 1.493820e-01	ci right 1.543683e-01	k: 12149	n:80000
TRIM67   80000 perm   18 sec   (4406 perm/sec)   p_kst 1.518625e-01   p_cons 7.362500e-03   p_joint 3.696250e-02

Joint ci ratio: 5.784784e-02	ci left: 4.713842e-02	ci right 4.995743e-02	k: 4368	n:90000
Cons ci ratio: 1.492036e-01	ci left: 7.042976e-03	ci right 8.189103e-03	k: 684	n:90000
KS ci ratio: 3.129592e-02	ci left: 1.461164e-01	ci right 1.507730e-01	k: 13359	n:90000
TRIM67   90000 perm   21 sec   (4319 perm/sec)   p_kst 1.484333e-01   p_cons 7.600000e-03   p_joint 4.853333e-02

Joint ci ratio: 5.547304e-02	ci left: 4.623914e-02	ci right 4.888718e-02	k: 4755	n:100000
Cons ci ratio: 1.431779e-01	ci left: 6.907067e-03	ci right 7.981799e-03	k: 743	n:100000
KS ci ratio: 2.968928e-02	ci left: 1.462416e-01	ci right 1.506588e-01	k: 14844	n:100000
TRIM67   100000 perm   24 sec   (4237 perm/sec)   p_kst 1.484400e-01   p_cons 7.430000e-03   p_joint 4.755000e-02

Joint ci ratio: 5.849304e-02	ci left: 3.807868e-02	ci right 4.038206e-02	k: 4314	n:110000
Cons ci ratio: 1.370557e-01	ci left: 6.875660e-03	ci right 7.896026e-03	k: 811	n:110000
KS ci ratio: 2.830508e-02	ci left: 1.463672e-01	ci right 1.505786e-01	k: 16331	n:110000
TRIM67   110000 perm   26 sec   (4162 perm/sec)   p_kst 1.484636e-01   p_cons 7.372727e-03   p_joint 3.921818e-02

Joint ci ratio: 5.748234e-02	ci left: 3.623487e-02	ci right 3.838756e-02	k: 4476	n:120000
Cons ci ratio: 1.318082e-01	ci left: 6.834185e-03	ci right 7.806520e-03	k: 877	n:120000
KS ci ratio: 2.714276e-02	ci left: 1.460615e-01	ci right 1.500888e-01	k: 17768	n:120000
TRIM67   120000 perm   29 sec   (4090 perm/sec)   p_kst 1.480667e-01   p_cons 7.308333e-03   p_joint 3.730000e-02

Joint ci ratio: 5.427018e-02	ci left: 3.753650e-02	ci right 3.963799e-02	k: 5015	n:130000
Cons ci ratio: 1.271206e-01	ci left: 6.799722e-03	ci right 7.730153e-03	k: 943	n:130000
KS ci ratio: 2.603330e-02	ci left: 1.465710e-01	ci right 1.504447e-01	k: 19305	n:130000
TRIM67   130000 perm   32 sec   (4024 perm/sec)   p_kst 1.485000e-01   p_cons 7.253846e-03   p_joint 3.857692e-02

Joint ci ratio: 4.987639e-02	ci left: 4.120220e-02	ci right 4.331681e-02	k: 5915	n:140000
Cons ci ratio: 1.218710e-01	ci left: 6.888445e-03	ci right 7.789284e-03	k: 1026	n:140000
KS ci ratio: 2.511902e-02	ci left: 1.463142e-01	ci right 1.500433e-01	k: 20744	n:140000
TRIM67   140000 perm   35 sec   (3962 perm/sec)   p_kst 1.481714e-01   p_cons 7.328571e-03   p_joint 4.225000e-02

Joint ci ratio: 5.368860e-02	ci left: 3.339781e-02	ci right 3.524691e-02	k: 5147	n:150000
Cons ci ratio: 1.170630e-01	ci left: 6.985439e-03	ci right 7.860430e-03	k: 1112	n:150000
KS ci ratio: 2.421600e-02	ci left: 1.469096e-01	ci right 1.505173e-01	k: 22306	n:150000
TRIM67   150000 perm   38 sec   (3898 perm/sec)   p_kst 1.487067e-01   p_cons 7.413333e-03   p_joint 3.431333e-02

Joint ci ratio: 5.657512e-02	ci left: 2.830646e-02	ci right 2.996066e-02	k: 4660	n:160000
Cons ci ratio: 1.146768e-01	ci left: 6.834054e-03	ci right 7.671450e-03	k: 1159	n:160000
KS ci ratio: 2.341650e-02	ci left: 1.472958e-01	ci right 1.507920e-01	k: 23846	n:160000
TRIM67   160000 perm   42 sec   (3837 perm/sec)   p_kst 1.490375e-01   p_cons 7.243750e-03   p_joint 2.912500e-02

Joint ci ratio: 5.530904e-02	ci left: 2.790563e-02	ci right 2.949873e-02	k: 4878	n:170000
Cons ci ratio: 1.119643e-01	ci left: 6.757826e-03	ci right 7.565000e-03	k: 1216	n:170000
KS ci ratio: 2.271283e-02	ci left: 1.473982e-01	ci right 1.507903e-01	k: 25345	n:170000
TRIM67   170000 perm   45 sec   (3778 perm/sec)   p_kst 1.490882e-01   p_cons 7.152941e-03   p_joint 2.869412e-02

Joint ci ratio: 5.433281e-02	ci left: 2.734139e-02	ci right 2.887386e-02	k: 5058	n:180000
Cons ci ratio: 1.086226e-01	ci left: 6.792973e-03	ci right 7.578580e-03	k: 1292	n:180000
KS ci ratio: 2.208207e-02	ci left: 1.473413e-01	ci right 1.506367e-01	k: 26817	n:180000
TRIM67   180000 perm   48 sec   (3722 perm/sec)   p_kst 1.489833e-01   p_cons 7.177778e-03   p_joint 2.810000e-02

Joint ci ratio: 5.464104e-02	ci left: 2.565256e-02	ci right 2.709878e-02	k: 5010	n:190000
Cons ci ratio: 1.061901e-01	ci left: 6.742745e-03	ci right 7.503988e-03	k: 1352	n:190000
KS ci ratio: 2.150511e-02	ci left: 1.472444e-01	ci right 1.504505e-01	k: 28280	n:190000
TRIM67   190000 perm   52 sec   (3670 perm/sec)   p_kst 1.488421e-01   p_cons 7.115789e-03   p_joint 2.636842e-02

Joint ci ratio: 5.409945e-02	ci left: 2.488753e-02	ci right 2.627627e-02	k: 5115	n:200000
Cons ci ratio: 1.039882e-01	ci left: 6.687975e-03	ci right 7.426421e-03	k: 1410	n:200000
KS ci ratio: 2.095665e-02	ci left: 1.473325e-01	ci right 1.504577e-01	k: 29778	n:200000
TRIM67   200000 perm   55 sec   (3622 perm/sec)   p_kst 1.488900e-01   p_cons 7.050000e-03   p_joint 2.557500e-02

Joint ci ratio: 5.539480e-02	ci left: 2.264491e-02	ci right 2.393972e-02	k: 4890	n:210000
Cons ci ratio: 1.013633e-01	ci left: 6.712837e-03	ci right 7.434203e-03	k: 1484	n:210000
KS ci ratio: 2.044083e-02	ci left: 1.475032e-01	ci right 1.505541e-01	k: 31295	n:210000
TRIM67   210000 perm   59 sec   (3575 perm/sec)   p_kst 1.490238e-01   p_cons 7.066667e-03   p_joint 2.328571e-02

Joint ci ratio: 5.265560e-02	ci left: 2.392530e-02	ci right 2.522363e-02	k: 5405	n:220000
Cons ci ratio: 9.883194e-02	ci left: 6.748952e-03	ci right 7.455037e-03	k: 1561	n:220000
KS ci ratio: 1.995916e-02	ci left: 1.476864e-01	ci right 1.506683e-01	k: 32818	n:220000
TRIM67   220000 perm   62 sec   (3531 perm/sec)   p_kst 1.491727e-01   p_cons 7.095455e-03   p_joint 2.456818e-02

Outputting figure to mutsig2_images.part000000000182/TRIM67.4_2392_220000_0.14917_0.0070955_0.024568.png
                gene_name: TRIM67
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0071 
      ci_cons_bounds_left: 0.0067 
     ci_cons_bounds_right: 0.0075 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 59 percent done.
TRIM71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
Cons ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
TRIM71   10000 perm   2 sec   (5626 perm/sec)   p_kst 1.911000e-01   p_cons 3.254000e-01   p_joint 1.749000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM71.4_2623_10000_0.1911_0.3254_0.1749.png
                gene_name: TRIM71
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
TRIM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
KS ci ratio: 1.661754e-02	ci left: 8.405065e-01	ci right 8.546904e-01	k: 8477	n:10000
TRIM9   10000 perm   2 sec   (5815 perm/sec)   p_kst 8.477000e-01   p_cons 5.606000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM9.4_2223_10000_0.8477_0.5606_1.png
                gene_name: TRIM9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TRIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
Cons ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
KS ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
TRIP11   10000 perm   2 sec   (4390 perm/sec)   p_kst 4.627000e-01   p_cons 1.789000e-01   p_joint 4.459000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP11.4_6024_10000_0.4627_0.1789_0.4459.png
                gene_name: TRIP11
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
TRMT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
Cons ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
TRMT12   10000 perm   2 sec   (5997 perm/sec)   p_kst 3.462000e-01   p_cons 5.610000e-02   p_joint 1.522000e-01

Joint ci ratio: 5.669738e-02	ci left: 1.874020e-01	ci right 1.983874e-01	k: 3857	n:20000
Cons ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
KS ci ratio: 3.822674e-02	ci left: 3.379619e-01	ci right 3.511833e-01	k: 6891	n:20000
TRMT12   20000 perm   4 sec   (5360 perm/sec)   p_kst 3.445500e-01   p_cons 5.270000e-02   p_joint 1.928500e-01

Joint ci ratio: 5.501576e-02	ci left: 1.407370e-01	ci right 1.487320e-01	k: 4341	n:30000
Cons ci ratio: 9.324420e-02	ci left: 5.303346e-02	ci right 5.825301e-02	k: 1668	n:30000
KS ci ratio: 3.122811e-02	ci left: 3.389552e-01	ci right 3.497416e-01	k: 10330	n:30000
TRMT12   30000 perm   6 sec   (5081 perm/sec)   p_kst 3.443333e-01   p_cons 5.560000e-02   p_joint 1.447000e-01

Outputting figure to mutsig2_images.part000000000182/TRMT12.4_1351_30000_0.34433_0.0556_0.1447.png
                gene_name: TRMT12
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 66 percent done.
TRMT61B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
Cons ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
KS ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
TRMT61B   10000 perm   2 sec   (6157 perm/sec)   p_kst 5.100000e-02   p_cons 6.450000e-02   p_joint 4.930000e-02

Joint ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
Cons ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
KS ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
TRMT61B   20000 perm   4 sec   (5494 perm/sec)   p_kst 5.090000e-02   p_cons 6.495000e-02   p_joint 4.585000e-02

Joint ci ratio: 1.210642e-01	ci left: 3.171894e-02	ci right 3.583866e-02	k: 1012	n:30000
Cons ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
KS ci ratio: 9.579296e-02	ci left: 5.032870e-02	ci right 5.542499e-02	k: 1585	n:30000
TRMT61B   30000 perm   6 sec   (5231 perm/sec)   p_kst 5.283333e-02   p_cons 6.576667e-02   p_joint 3.373333e-02

Joint ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
Cons ci ratio: 7.383633e-02	ci left: 6.338939e-02	ci right 6.827387e-02	k: 2632	n:40000
KS ci ratio: 8.289049e-02	ci left: 5.075100e-02	ci right 5.516419e-02	k: 2117	n:40000
TRMT61B   40000 perm   8 sec   (5052 perm/sec)   p_kst 5.292500e-02   p_cons 6.580000e-02   p_joint 1.980000e-02

Joint ci ratio: 1.098850e-01	ci left: 2.345452e-02	ci right 2.620103e-02	k: 1240	n:50000
Cons ci ratio: 6.619489e-02	ci left: 6.336639e-02	ci right 6.772421e-02	k: 3276	n:50000
KS ci ratio: 7.423595e-02	ci left: 5.085580e-02	ci right 5.479632e-02	k: 2640	n:50000
TRMT61B   50000 perm   10 sec   (4917 perm/sec)   p_kst 5.280000e-02   p_cons 6.552000e-02   p_joint 2.480000e-02

Joint ci ratio: 1.220569e-01	ci left: 1.586755e-02	ci right 1.794623e-02	k: 1013	n:60000
Cons ci ratio: 6.072048e-02	ci left: 6.297444e-02	ci right 6.693444e-02	k: 3896	n:60000
KS ci ratio: 6.779279e-02	ci left: 5.099112e-02	ci right 5.458563e-02	k: 3166	n:60000
TRMT61B   60000 perm   13 sec   (4794 perm/sec)   p_kst 5.276667e-02   p_cons 6.493333e-02   p_joint 1.688333e-02

Joint ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
Cons ci ratio: 5.652607e-02	ci left: 6.246567e-02	ci right 6.611340e-02	k: 4499	n:70000
KS ci ratio: 6.275353e-02	ci left: 5.114067e-02	ci right 5.446795e-02	k: 3695	n:70000
TRMT61B   70000 perm   15 sec   (4689 perm/sec)   p_kst 5.278571e-02   p_cons 6.427143e-02   p_joint 1.585714e-02

Joint ci ratio: 1.111385e-01	ci left: 1.446081e-02	ci right 1.617460e-02	k: 1224	n:80000
Cons ci ratio: 5.296817e-02	ci left: 6.237529e-02	ci right 6.578141e-02	k: 5125	n:80000
KS ci ratio: 5.895150e-02	ci left: 5.082891e-02	ci right 5.392866e-02	k: 4189	n:80000
TRMT61B   80000 perm   17 sec   (4600 perm/sec)   p_kst 5.236250e-02   p_cons 6.406250e-02   p_joint 1.530000e-02

Joint ci ratio: 8.008067e-02	ci left: 2.489382e-02	ci right 2.698133e-02	k: 2333	n:90000
Cons ci ratio: 5.007705e-02	ci left: 6.214594e-02	ci right 6.534891e-02	k: 5736	n:90000
KS ci ratio: 5.562208e-02	ci left: 5.084343e-02	ci right 5.376329e-02	k: 4706	n:90000
TRMT61B   90000 perm   20 sec   (4513 perm/sec)   p_kst 5.228889e-02   p_cons 6.373333e-02   p_joint 2.592222e-02

Outputting figure to mutsig2_images.part000000000182/TRMT61B.4_1462_90000_0.052289_0.063733_0.025922.png
                gene_name: TRMT61B
               theta_stop: 0.080 
                    nperm: 90000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 67 percent done.
TROAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
TROAP   10000 perm   2 sec   (5677 perm/sec)   p_kst 6.100000e-03   p_cons 6.845000e-01   p_joint 3.340000e-02

Joint ci ratio: 1.865486e-01	ci left: 1.958233e-02	ci right 2.365841e-02	k: 431	n:20000
Cons ci ratio: 1.969929e-02	ci left: 6.578072e-01	ci right 6.709450e-01	k: 13288	n:20000
KS ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
TROAP   20000 perm   4 sec   (5106 perm/sec)   p_kst 5.250000e-03   p_cons 6.644000e-01   p_joint 2.155000e-02

Joint ci ratio: 1.803684e-01	ci left: 1.410070e-02	ci right 1.692759e-02	k: 464	n:30000
Cons ci ratio: 1.617366e-02	ci left: 6.565482e-01	ci right 6.672871e-01	k: 19858	n:30000
KS ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
TROAP   30000 perm   6 sec   (4884 perm/sec)   p_kst 5.466667e-03   p_cons 6.619333e-01   p_joint 1.546667e-02

Joint ci ratio: 1.212856e-01	ci left: 2.390442e-02	ci right 2.701500e-02	k: 1017	n:40000
Cons ci ratio: 1.338197e-02	ci left: 6.774608e-01	ci right 6.866127e-01	k: 27282	n:40000
KS ci ratio: 2.555046e-01	ci left: 5.102800e-03	ci right 6.620287e-03	k: 233	n:40000
TROAP   40000 perm   8 sec   (4733 perm/sec)   p_kst 5.825000e-03   p_cons 6.820500e-01   p_joint 2.542500e-02

Joint ci ratio: 1.127599e-01	ci left: 2.226771e-02	ci right 2.494799e-02	k: 1179	n:50000
Cons ci ratio: 1.194028e-02	ci left: 6.790013e-01	ci right 6.871775e-01	k: 34155	n:50000
KS ci ratio: 2.287276e-01	ci left: 5.172081e-03	ci right 6.526259e-03	k: 291	n:50000
TROAP   50000 perm   11 sec   (4607 perm/sec)   p_kst 5.820000e-03   p_cons 6.831000e-01   p_joint 2.358000e-02

Joint ci ratio: 1.120224e-01	ci left: 1.887851e-02	ci right 2.113492e-02	k: 1199	n:60000
Cons ci ratio: 1.088276e-02	ci left: 6.800455e-01	ci right 6.875034e-01	k: 41027	n:60000
KS ci ratio: 2.126167e-01	ci left: 5.034365e-03	ci right 6.247539e-03	k: 337	n:60000
TROAP   60000 perm   13 sec   (4502 perm/sec)   p_kst 5.616667e-03   p_cons 6.837833e-01   p_joint 1.998333e-02

Joint ci ratio: 9.988506e-02	ci left: 2.045218e-02	ci right 2.261631e-02	k: 1506	n:70000
Cons ci ratio: 1.004948e-02	ci left: 6.814438e-01	ci right 6.883408e-01	k: 47943	n:70000
KS ci ratio: 1.949482e-01	ci left: 5.182916e-03	ci right 6.315788e-03	k: 401	n:70000
TROAP   70000 perm   16 sec   (4411 perm/sec)   p_kst 5.728571e-03   p_cons 6.849000e-01   p_joint 2.151429e-02

Joint ci ratio: 8.890403e-02	ci left: 2.266921e-02	ci right 2.479052e-02	k: 1897	n:80000
Cons ci ratio: 9.421136e-03	ci left: 6.807154e-01	ci right 6.871713e-01	k: 54716	n:80000
KS ci ratio: 1.836543e-01	ci left: 5.142349e-03	ci right 6.193988e-03	k: 452	n:80000
TROAP   80000 perm   19 sec   (4270 perm/sec)   p_kst 5.650000e-03   p_cons 6.839500e-01   p_joint 2.371250e-02

Joint ci ratio: 9.007191e-02	ci left: 1.968194e-02	ci right 2.154914e-02	k: 1854	n:90000
Cons ci ratio: 8.884052e-03	ci left: 6.808175e-01	ci right 6.869040e-01	k: 61548	n:90000
KS ci ratio: 1.749952e-01	ci left: 5.059135e-03	ci right 6.039815e-03	k: 498	n:90000
TROAP   90000 perm   22 sec   (4184 perm/sec)   p_kst 5.533333e-03   p_cons 6.838667e-01   p_joint 2.060000e-02

Joint ci ratio: 8.926385e-02	ci left: 1.807477e-02	ci right 1.977330e-02	k: 1891	n:100000
Cons ci ratio: 8.425170e-03	ci left: 6.811282e-01	ci right 6.869011e-01	k: 68402	n:100000
KS ci ratio: 1.653335e-01	ci left: 5.127698e-03	ci right 6.061330e-03	k: 558	n:100000
TROAP   100000 perm   24 sec   (4131 perm/sec)   p_kst 5.580000e-03   p_cons 6.840200e-01   p_joint 1.891000e-02

Joint ci ratio: 7.903766e-02	ci left: 2.100752e-02	ci right 2.274509e-02	k: 2405	n:110000
Cons ci ratio: 8.029744e-03	ci left: 6.814437e-01	ci right 6.869466e-01	k: 75262	n:110000
KS ci ratio: 1.561022e-01	ci left: 5.254905e-03	ci right 6.153277e-03	k: 626	n:110000
TROAP   110000 perm   27 sec   (4074 perm/sec)   p_kst 5.690909e-03   p_cons 6.842000e-01   p_joint 2.186364e-02

Joint ci ratio: 8.050527e-02	ci left: 1.859441e-02	ci right 2.016227e-02	k: 2324	n:120000
Cons ci ratio: 7.682710e-03	ci left: 6.818537e-01	ci right 6.871207e-01	k: 82139	n:120000
KS ci ratio: 1.491280e-01	ci left: 5.297917e-03	ci right 6.159567e-03	k: 686	n:120000
TROAP   120000 perm   30 sec   (4018 perm/sec)   p_kst 5.716667e-03   p_cons 6.844917e-01   p_joint 1.936667e-02

Joint ci ratio: 6.979149e-02	ci left: 2.286479e-02	ci right 2.452578e-02	k: 3079	n:130000
Cons ci ratio: 7.373546e-03	ci left: 6.824130e-01	ci right 6.874711e-01	k: 89043	n:130000
KS ci ratio: 1.430121e-01	ci left: 5.335066e-03	ci right 6.164137e-03	k: 746	n:130000
TROAP   130000 perm   33 sec   (3963 perm/sec)   p_kst 5.738462e-03   p_cons 6.849462e-01   p_joint 2.368462e-02

Joint ci ratio: 6.930180e-02	ci left: 2.156798e-02	ci right 2.312332e-02	k: 3127	n:140000
Cons ci ratio: 7.109265e-03	ci left: 6.822659e-01	ci right 6.871407e-01	k: 95859	n:140000
KS ci ratio: 1.379360e-01	ci left: 5.339935e-03	ci right 6.137888e-03	k: 802	n:140000
TROAP   140000 perm   36 sec   (3908 perm/sec)   p_kst 5.728571e-03   p_cons 6.847071e-01   p_joint 2.233571e-02

Joint ci ratio: 7.771207e-02	ci left: 1.603137e-02	ci right 1.733407e-02	k: 2501	n:150000
Cons ci ratio: 7.219335e-03	ci left: 6.603944e-01	ci right 6.651859e-01	k: 99419	n:150000
KS ci ratio: 1.328987e-01	ci left: 5.383280e-03	ci right 6.156012e-03	k: 864	n:150000
TROAP   150000 perm   39 sec   (3853 perm/sec)   p_kst 5.760000e-03   p_cons 6.627933e-01   p_joint 1.667333e-02

Joint ci ratio: 7.247402e-02	ci left: 1.730506e-02	ci right 1.861249e-02	k: 2872	n:160000
Cons ci ratio: 6.976799e-03	ci left: 6.613227e-01	ci right 6.659589e-01	k: 106183	n:160000
KS ci ratio: 1.285852e-01	ci left: 5.403519e-03	ci right 6.152060e-03	k: 923	n:160000
TROAP   160000 perm   42 sec   (3802 perm/sec)   p_kst 5.768750e-03   p_cons 6.636437e-01   p_joint 1.795000e-02

Joint ci ratio: 6.638244e-02	ci left: 1.943233e-02	ci right 2.077234e-02	k: 3416	n:170000
Cons ci ratio: 6.757030e-03	ci left: 6.621496e-01	ci right 6.666448e-01	k: 112948	n:170000
KS ci ratio: 1.242221e-01	ci left: 5.461636e-03	ci right 6.190666e-03	k: 989	n:170000
TROAP   170000 perm   45 sec   (3749 perm/sec)   p_kst 5.817647e-03   p_cons 6.644000e-01   p_joint 2.009412e-02

Joint ci ratio: 6.516773e-02	ci left: 1.906298e-02	ci right 2.035255e-02	k: 3546	n:180000
Cons ci ratio: 6.561665e-03	ci left: 6.625526e-01	ci right 6.669199e-01	k: 119653	n:180000
KS ci ratio: 1.210850e-01	ci left: 5.438233e-03	ci right 6.144493e-03	k: 1041	n:180000
TROAP   180000 perm   49 sec   (3698 perm/sec)   p_kst 5.783333e-03   p_cons 6.647389e-01   p_joint 1.970000e-02

Joint ci ratio: 6.285033e-02	ci left: 1.943220e-02	ci right 2.069830e-02	k: 3811	n:190000
Cons ci ratio: 6.386535e-03	ci left: 6.626196e-01	ci right 6.668702e-01	k: 126302	n:190000
KS ci ratio: 1.141504e-01	ci left: 5.816169e-03	ci right 6.525341e-03	k: 1171	n:190000
TROAP   190000 perm   52 sec   (3647 perm/sec)   p_kst 6.163158e-03   p_cons 6.647474e-01   p_joint 2.005789e-02

Joint ci ratio: 6.232642e-02	ci left: 1.879015e-02	ci right 2.000384e-02	k: 3878	n:200000
Cons ci ratio: 6.223742e-03	ci left: 6.627513e-01	ci right 6.668939e-01	k: 132965	n:200000
KS ci ratio: 1.109296e-01	ci left: 5.860657e-03	ci right 6.553773e-03	k: 1240	n:200000
TROAP   200000 perm   56 sec   (3598 perm/sec)   p_kst 6.200000e-03   p_cons 6.648250e-01   p_joint 1.939000e-02

Joint ci ratio: 5.851447e-02	ci left: 2.031119e-02	ci right 2.154018e-02	k: 4393	n:210000
Cons ci ratio: 6.067798e-03	ci left: 6.632389e-01	ci right 6.672803e-01	k: 139705	n:210000
KS ci ratio: 1.084259e-01	ci left: 5.850190e-03	ci right 6.525455e-03	k: 1298	n:210000
TROAP   210000 perm   59 sec   (3550 perm/sec)   p_kst 6.180952e-03   p_cons 6.652619e-01   p_joint 2.091905e-02

Joint ci ratio: 5.821256e-02	ci left: 1.960722e-02	ci right 2.078728e-02	k: 4442	n:220000
Cons ci ratio: 5.925847e-03	ci left: 6.634694e-01	ci right 6.674172e-01	k: 146398	n:220000
KS ci ratio: 1.062816e-01	ci left: 5.818708e-03	ci right 6.476225e-03	k: 1351	n:220000
TROAP   220000 perm   63 sec   (3507 perm/sec)   p_kst 6.140909e-03   p_cons 6.654455e-01   p_joint 2.019091e-02

Joint ci ratio: 5.811207e-02	ci left: 1.883592e-02	ci right 1.996754e-02	k: 4461	n:230000
Cons ci ratio: 5.795563e-03	ci left: 6.635153e-01	ci right 6.673762e-01	k: 153053	n:230000
KS ci ratio: 1.037409e-01	ci left: 5.849379e-03	ci right 6.493597e-03	k: 1418	n:230000
TROAP   230000 perm   66 sec   (3463 perm/sec)   p_kst 6.165217e-03   p_cons 6.654478e-01   p_joint 1.939565e-02

Joint ci ratio: 5.210275e-02	ci left: 2.244098e-02	ci right 2.364558e-02	k: 5529	n:240000
Cons ci ratio: 5.676166e-03	ci left: 6.633496e-01	ci right 6.671297e-01	k: 159658	n:240000
KS ci ratio: 1.044227e-01	ci left: 5.532560e-03	ci right 6.146134e-03	k: 1400	n:240000
TROAP   240000 perm   70 sec   (3422 perm/sec)   p_kst 5.833333e-03   p_cons 6.652417e-01   p_joint 2.303750e-02

Joint ci ratio: 4.904930e-02	ci left: 2.430061e-02	ci right 2.552644e-02	k: 6227	n:250000
Cons ci ratio: 5.563353e-03	ci left: 6.632381e-01	ci right 6.669421e-01	k: 166273	n:250000
KS ci ratio: 1.024321e-01	ci left: 5.525565e-03	ci right 6.125979e-03	k: 1455	n:250000
TROAP   250000 perm   74 sec   (3382 perm/sec)   p_kst 5.820000e-03   p_cons 6.650920e-01   p_joint 2.490800e-02

Joint ci ratio: 4.842800e-02	ci left: 2.398516e-02	ci right 2.517932e-02	k: 6390	n:260000
Cons ci ratio: 5.457339e-03	ci left: 6.631088e-01	ci right 6.667413e-01	k: 172881	n:260000
KS ci ratio: 1.002514e-01	ci left: 5.552962e-03	ci right 6.142751e-03	k: 1519	n:260000
TROAP   260000 perm   78 sec   (3341 perm/sec)   p_kst 5.842308e-03   p_cons 6.649269e-01   p_joint 2.457692e-02

Joint ci ratio: 4.850114e-02	ci left: 2.304899e-02	ci right 2.419831e-02	k: 6377	n:270000
Cons ci ratio: 5.356939e-03	ci left: 6.630084e-01	ci right 6.665733e-01	k: 179494	n:270000
KS ci ratio: 9.811077e-02	ci left: 5.589295e-03	ci right 6.169537e-03	k: 1586	n:270000
TROAP   270000 perm   82 sec   (3301 perm/sec)   p_kst 5.874074e-03   p_cons 6.647926e-01   p_joint 2.361852e-02

Outputting figure to mutsig2_images.part000000000182/TROAP.4_2495_270000_0.0058741_0.66479_0.023619.png
                gene_name: TROAP
               theta_stop: 0.098 
                    nperm: 270000 
                     p_ks: 0.0059 
        ci_ks_bounds_left: 0.0056 
       ci_ks_bounds_right: 0.0062 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 69 percent done.
TRPV1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
Cons ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
TRPV1   10000 perm   2 sec   (5823 perm/sec)   p_kst 8.500000e-02   p_cons 1.720000e-01   p_joint 1.272000e-01

Joint ci ratio: 6.639951e-02	ci left: 1.434502e-01	ci right 1.533522e-01	k: 2967	n:20000
Cons ci ratio: 6.026635e-02	ci left: 1.693119e-01	ci right 1.798828e-01	k: 3491	n:20000
KS ci ratio: 9.195033e-02	ci left: 7.945708e-02	ci right 8.716457e-02	k: 1665	n:20000
TRPV1   20000 perm   4 sec   (5248 perm/sec)   p_kst 8.325000e-02   p_cons 1.745500e-01   p_joint 1.483500e-01

Outputting figure to mutsig2_images.part000000000182/TRPV1.3_2253_20000_0.08325_0.17455_0.14835.png
                gene_name: TRPV1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 70 percent done.
TSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459481e-02	ci left: 8.717317e-01	ci right 8.846470e-01	k: 8783	n:10000
Cons ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
TSC2   10000 perm   2 sec   (4499 perm/sec)   p_kst 5.025000e-01   p_cons 9.384000e-01   p_joint 8.783000e-01

Outputting figure to mutsig2_images.part000000000182/TSC2.4_5588_10000_0.5025_0.9384_0.8783.png
                gene_name: TSC2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 72 percent done.
TSEN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
KS ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
TSEN2   10000 perm   2 sec   (5853 perm/sec)   p_kst 2.755000e-01   p_cons 3.573000e-01   p_joint 4.116000e-01

Outputting figure to mutsig2_images.part000000000182/TSEN2.4_1481_10000_0.2755_0.3573_0.4116.png
                gene_name: TSEN2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 73 percent done.
TSGA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
Cons ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
TSGA14   10000 perm   2 sec   (5729 perm/sec)   p_kst 4.142000e-01   p_cons 3.646000e-01   p_joint 5.574000e-01

Outputting figure to mutsig2_images.part000000000182/TSGA14.4_1166_10000_0.4142_0.3646_0.5574.png
                gene_name: TSGA14
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
TROVE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
Cons ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
KS ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
TROVE2   10000 perm   2 sec   (6170 perm/sec)   p_kst 3.982000e-01   p_cons 1.234000e-01   p_joint 4.545000e-01

Joint ci ratio: 2.713779e-02	ci left: 5.035959e-01	ci right 5.175010e-01	k: 10211	n:20000
Cons ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
KS ci ratio: 3.415444e-02	ci left: 3.902593e-01	ci right 4.038706e-01	k: 7941	n:20000
TROVE2   20000 perm   4 sec   (5424 perm/sec)   p_kst 3.970500e-01   p_cons 1.234000e-01   p_joint 5.105500e-01

Outputting figure to mutsig2_images.part000000000182/TROVE2.3_1706_20000_0.39705_0.1234_0.51055.png
                gene_name: TROVE2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 77 percent done.
TRPC4AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
TRPC4AP   10000 perm   2 sec   (5924 perm/sec)   p_kst 4.127000e-01   p_cons 5.571000e-01   p_joint 7.355000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4AP.3_2470_10000_0.4127_0.5571_0.7355.png
                gene_name: TRPC4AP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 78 percent done.
TRPM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
TRPM7   10000 perm   2 sec   (4774 perm/sec)   p_kst 2.176000e-01   p_cons 6.750000e-01   p_joint 4.867000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM7.3_5754_10000_0.2176_0.675_0.4867.png
                gene_name: TRPM7
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 80 percent done.
TSC22D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
KS ci ratio: 1.464252e-02	ci left: 8.710161e-01	ci right 8.839631e-01	k: 8776	n:10000
TSC22D4   10000 perm   2 sec   (6463 perm/sec)   p_kst 8.776000e-01   p_cons 3.099000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000182/TSC22D4.3_1204_10000_0.8776_0.3099_0.6374.png
                gene_name: TSC22D4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
TSEN34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
Cons ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
KS ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
TSEN34   10000 perm   1 sec   (6691 perm/sec)   p_kst 3.944000e-01   p_cons 4.480000e-02   p_joint 9.150000e-02

Joint ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
Cons ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
KS ci ratio: 3.472824e-02	ci left: 3.823346e-01	ci right 3.958976e-01	k: 7782	n:20000
TSEN34   20000 perm   3 sec   (5808 perm/sec)   p_kst 3.891000e-01   p_cons 4.590000e-02   p_joint 8.565000e-02

Joint ci ratio: 8.133187e-02	ci left: 6.893634e-02	ci right 7.481356e-02	k: 2155	n:30000
Cons ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
KS ci ratio: 2.818816e-02	ci left: 3.864032e-01	ci right 3.974844e-01	k: 11758	n:30000
TSEN34   30000 perm   5 sec   (5495 perm/sec)   p_kst 3.919333e-01   p_cons 4.670000e-02   p_joint 7.183333e-02

Joint ci ratio: 6.729248e-02	ci left: 7.556246e-02	ci right 8.084897e-02	k: 3127	n:40000
Cons ci ratio: 8.786528e-02	ci left: 4.531355e-02	ci right 4.950247e-02	k: 1895	n:40000
KS ci ratio: 2.453069e-02	ci left: 3.848416e-01	ci right 3.944244e-01	k: 15585	n:40000
TSEN34   40000 perm   8 sec   (5276 perm/sec)   p_kst 3.896250e-01   p_cons 4.737500e-02   p_joint 7.817500e-02

Outputting figure to mutsig2_images.part000000000182/TSEN34.3_949_40000_0.38962_0.047375_0.078175.png
                gene_name: TSEN34
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 83 percent done.
TSGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
TSGA10   10000 perm   2 sec   (5890 perm/sec)   p_kst 7.410000e-02   p_cons 4.894000e-01   p_joint 1.584000e-01

Joint ci ratio: 5.799528e-02	ci left: 1.805294e-01	ci right 1.913620e-01	k: 3718	n:20000
Cons ci ratio: 2.828775e-02	ci left: 4.828488e-01	ci right 4.967541e-01	k: 9796	n:20000
KS ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
TSGA10   20000 perm   4 sec   (5242 perm/sec)   p_kst 7.275000e-02   p_cons 4.898000e-01   p_joint 1.859000e-01

Outputting figure to mutsig2_images.part000000000182/TSGA10.3_2161_20000_0.07275_0.4898_0.1859.png
                gene_name: TSGA10
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 84 percent done.
TRIM63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
KS ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
TRIM63   10000 perm   2 sec   (6574 perm/sec)   p_kst 8.430000e-01   p_cons 2.513000e-01   p_joint 5.464000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM63.2_1098_10000_0.843_0.2513_0.5464.png
                gene_name: TRIM63
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 86 percent done.
TRIM65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
Cons ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
TRIM65   10000 perm   2 sec   (6234 perm/sec)   p_kst 1.000000e-03   p_cons 5.860000e-01   p_joint 3.800000e-03

Joint ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
Cons ci ratio: 2.352807e-02	ci left: 5.743261e-01	ci right 5.880503e-01	k: 11624	n:20000
KS ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
TRIM65   20000 perm   4 sec   (5588 perm/sec)   p_kst 1.100000e-03   p_cons 5.812000e-01   p_joint 2.300000e-03

Joint ci ratio: 1.736614e-01	ci left: 1.524830e-02	ci right 1.817970e-02	k: 500	n:30000
Cons ci ratio: 1.933223e-02	ci left: 5.725209e-01	ci right 5.837306e-01	k: 17344	n:30000
KS ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
TRIM65   30000 perm   6 sec   (5324 perm/sec)   p_kst 1.433333e-03   p_cons 5.781333e-01   p_joint 1.666667e-02

Joint ci ratio: 2.039596e-01	ci left: 8.216425e-03	ci right 1.010586e-02	k: 365	n:40000
Cons ci ratio: 1.672979e-02	ci left: 5.736428e-01	ci right 5.833458e-01	k: 23140	n:40000
KS ci ratio: 4.896017e-01	ci left: 1.210479e-03	ci right 2.014666e-03	k: 63	n:40000
TRIM65   40000 perm   8 sec   (5150 perm/sec)   p_kst 1.575000e-03   p_cons 5.785000e-01   p_joint 9.125000e-03

Joint ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
Cons ci ratio: 1.501035e-02	ci left: 5.726353e-01	ci right 5.813158e-01	k: 28849	n:50000
KS ci ratio: 4.248179e-01	ci left: 1.340248e-03	ci right 2.079538e-03	k: 84	n:50000
TRIM65   50000 perm   10 sec   (5006 perm/sec)   p_kst 1.680000e-03   p_cons 5.769800e-01   p_joint 8.760000e-03

Joint ci ratio: 2.107438e-01	ci left: 5.129090e-03	ci right 6.352797e-03	k: 343	n:60000
Cons ci ratio: 1.369078e-02	ci left: 5.734355e-01	ci right 5.813570e-01	k: 34644	n:60000
KS ci ratio: 3.976905e-01	ci left: 1.296191e-03	ci right 1.953528e-03	k: 96	n:60000
TRIM65   60000 perm   12 sec   (4896 perm/sec)   p_kst 1.600000e-03   p_cons 5.774000e-01   p_joint 5.716667e-03

Joint ci ratio: 1.605640e-01	ci left: 7.764634e-03	ci right 9.133724e-03	k: 590	n:70000
Cons ci ratio: 1.268451e-02	ci left: 5.733728e-01	ci right 5.807065e-01	k: 40393	n:70000
KS ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
TRIM65   70000 perm   15 sec   (4790 perm/sec)   p_kst 1.571429e-03   p_cons 5.770429e-01   p_joint 8.428571e-03

Joint ci ratio: 1.818464e-01	ci left: 5.249728e-03	ci right 6.311595e-03	k: 461	n:80000
Cons ci ratio: 1.184691e-02	ci left: 5.743684e-01	ci right 5.812259e-01	k: 46224	n:80000
KS ci ratio: 3.531805e-01	ci left: 1.266576e-03	ci right 1.820583e-03	k: 122	n:80000
TRIM65   80000 perm   17 sec   (4685 perm/sec)   p_kst 1.525000e-03   p_cons 5.778000e-01   p_joint 5.762500e-03

Joint ci ratio: 1.717376e-01	ci left: 5.261132e-03	ci right 6.260018e-03	k: 517	n:90000
Cons ci ratio: 1.117066e-02	ci left: 5.745095e-01	ci right 5.809743e-01	k: 51997	n:90000
KS ci ratio: 3.264034e-01	ci left: 1.339307e-03	ci right 1.871423e-03	k: 143	n:90000
TRIM65   90000 perm   20 sec   (4498 perm/sec)   p_kst 1.588889e-03   p_cons 5.777444e-01   p_joint 5.744444e-03

Joint ci ratio: 1.630038e-01	ci left: 5.281158e-03	ci right 6.227855e-03	k: 574	n:100000
Cons ci ratio: 1.059123e-02	ci left: 5.749618e-01	ci right 5.810937e-01	k: 57803	n:100000
KS ci ratio: 3.146163e-01	ci left: 1.306526e-03	ci right 1.803105e-03	k: 154	n:100000
TRIM65   100000 perm   23 sec   (4427 perm/sec)   p_kst 1.540000e-03   p_cons 5.780300e-01   p_joint 5.740000e-03

Joint ci ratio: 1.166393e-01	ci left: 9.570473e-03	ci right 1.076466e-02	k: 1117	n:110000
Cons ci ratio: 1.010481e-02	ci left: 5.747928e-01	ci right 5.806395e-01	k: 63549	n:110000
KS ci ratio: 3.022022e-01	ci left: 1.296790e-03	ci right 1.766485e-03	k: 167	n:110000
TRIM65   110000 perm   26 sec   (4301 perm/sec)   p_kst 1.518182e-03   p_cons 5.777182e-01   p_joint 1.015455e-02

Joint ci ratio: 1.113805e-01	ci left: 9.647296e-03	ci right 1.079323e-02	k: 1225	n:120000
Cons ci ratio: 9.665740e-03	ci left: 5.753665e-01	ci right 5.809631e-01	k: 69380	n:120000
KS ci ratio: 2.911503e-01	ci left: 1.288997e-03	ci right 1.735650e-03	k: 180	n:120000
TRIM65   120000 perm   29 sec   (4194 perm/sec)   p_kst 1.500000e-03   p_cons 5.781667e-01   p_joint 1.020833e-02

Joint ci ratio: 8.370014e-02	ci left: 1.589735e-02	ci right 1.729357e-02	k: 2156	n:130000
Cons ci ratio: 9.272888e-03	ci left: 5.761951e-01	ci right 5.815706e-01	k: 75255	n:130000
KS ci ratio: 2.790757e-01	ci left: 1.304125e-03	ci right 1.733988e-03	k: 196	n:130000
TRIM65   130000 perm   31 sec   (4137 perm/sec)   p_kst 1.507692e-03   p_cons 5.788846e-01   p_joint 1.658462e-02

Joint ci ratio: 8.077798e-02	ci left: 1.587417e-02	ci right 1.721739e-02	k: 2315	n:140000
Cons ci ratio: 8.943814e-03	ci left: 5.758439e-01	ci right 5.810243e-01	k: 80981	n:140000
KS ci ratio: 2.683886e-01	ci left: 1.317419e-03	ci right 1.732238e-03	k: 212	n:140000
TRIM65   140000 perm   34 sec   (4079 perm/sec)   p_kst 1.514286e-03   p_cons 5.784357e-01   p_joint 1.653571e-02

Joint ci ratio: 7.791818e-02	ci left: 1.594637e-02	ci right 1.724575e-02	k: 2488	n:150000
Cons ci ratio: 8.641183e-03	ci left: 5.758962e-01	ci right 5.809008e-01	k: 86760	n:150000
KS ci ratio: 2.555114e-01	ci left: 1.366637e-03	ci right 1.773020e-03	k: 234	n:150000
TRIM65   150000 perm   37 sec   (4006 perm/sec)   p_kst 1.560000e-03   p_cons 5.784000e-01   p_joint 1.658667e-02

Joint ci ratio: 7.282325e-02	ci left: 1.713932e-02	ci right 1.844073e-02	k: 2845	n:160000
Cons ci ratio: 8.366150e-03	ci left: 5.760134e-01	ci right 5.808588e-01	k: 92550	n:160000
KS ci ratio: 2.477280e-01	ci left: 1.369062e-03	ci right 1.761855e-03	k: 249	n:160000
TRIM65   160000 perm   40 sec   (3951 perm/sec)   p_kst 1.556250e-03   p_cons 5.784375e-01   p_joint 1.778125e-02

Joint ci ratio: 9.428947e-02	ci left: 9.589899e-03	ci right 1.054457e-02	k: 1710	n:170000
Cons ci ratio: 8.108373e-03	ci left: 5.765664e-01	ci right 5.812662e-01	k: 98416	n:170000
KS ci ratio: 2.419910e-01	ci left: 1.354785e-03	ci right 1.733129e-03	k: 261	n:170000
TRIM65   170000 perm   44 sec   (3898 perm/sec)   p_kst 1.535294e-03   p_cons 5.789176e-01   p_joint 1.005882e-02

Joint ci ratio: 9.496262e-02	ci left: 8.932228e-03	ci right 9.828124e-03	k: 1687	n:180000
Cons ci ratio: 7.882905e-03	ci left: 5.764483e-01	ci right 5.810159e-01	k: 104172	n:180000
KS ci ratio: 2.353480e-01	ci left: 1.357870e-03	ci right 1.725150e-03	k: 276	n:180000
TRIM65   180000 perm   47 sec   (3844 perm/sec)   p_kst 1.533333e-03   p_cons 5.787333e-01   p_joint 9.372222e-03

Joint ci ratio: 8.931391e-02	ci left: 9.588344e-03	ci right 1.048986e-02	k: 1906	n:190000
Cons ci ratio: 7.674343e-03	ci left: 5.764022e-01	ci right 5.808480e-01	k: 109939	n:190000
KS ci ratio: 2.300140e-01	ci left: 1.350836e-03	ci right 1.706756e-03	k: 289	n:190000
TRIM65   190000 perm   50 sec   (3791 perm/sec)   p_kst 1.521053e-03   p_cons 5.786263e-01   p_joint 1.003158e-02

Joint ci ratio: 8.723631e-02	ci left: 9.558765e-03	ci right 1.043553e-02	k: 1998	n:200000
Cons ci ratio: 7.482118e-03	ci left: 5.763222e-01	ci right 5.806555e-01	k: 115698	n:200000
KS ci ratio: 2.265294e-01	ci left: 1.325719e-03	ci right 1.668990e-03	k: 298	n:200000
TRIM65   200000 perm   53 sec   (3739 perm/sec)   p_kst 1.490000e-03   p_cons 5.784900e-01   p_joint 9.990000e-03

Joint ci ratio: 8.507152e-02	ci left: 9.583499e-03	ci right 1.043963e-02	k: 2101	n:210000
Cons ci ratio: 7.306429e-03	ci left: 5.760653e-01	ci right 5.802944e-01	k: 121418	n:210000
KS ci ratio: 2.207007e-01	ci left: 1.334514e-03	ci right 1.669964e-03	k: 314	n:210000
TRIM65   210000 perm   57 sec   (3692 perm/sec)   p_kst 1.495238e-03   p_cons 5.781810e-01   p_joint 1.000476e-02

Joint ci ratio: 6.630092e-02	ci left: 1.512206e-02	ci right 1.616349e-02	k: 3440	n:220000
Cons ci ratio: 7.137833e-03	ci left: 5.761558e-01	ci right 5.802876e-01	k: 127209	n:220000
KS ci ratio: 2.136897e-01	ci left: 1.364119e-03	ci right 1.694692e-03	k: 335	n:220000
TRIM65   220000 perm   60 sec   (3644 perm/sec)   p_kst 1.522727e-03   p_cons 5.782227e-01   p_joint 1.563636e-02

Joint ci ratio: 6.049186e-02	ci left: 1.738774e-02	ci right 1.847663e-02	k: 4123	n:230000
Cons ci ratio: 6.978217e-03	ci left: 5.763918e-01	ci right 5.804323e-01	k: 133035	n:230000
KS ci ratio: 2.090740e-01	ci left: 1.366575e-03	ci right 1.689674e-03	k: 350	n:230000
TRIM65   230000 perm   64 sec   (3598 perm/sec)   p_kst 1.521739e-03   p_cons 5.784130e-01   p_joint 1.792609e-02

Joint ci ratio: 6.139164e-02	ci left: 1.619108e-02	ci right 1.722064e-02	k: 4008	n:240000
Cons ci ratio: 6.828440e-03	ci left: 5.766381e-01	ci right 5.805933e-01	k: 138868	n:240000
KS ci ratio: 2.058748e-01	ci left: 1.353086e-03	ci right 1.667484e-03	k: 361	n:240000
TRIM65   240000 perm   68 sec   (3551 perm/sec)   p_kst 1.504167e-03   p_cons 5.786167e-01   p_joint 1.670000e-02

Joint ci ratio: 5.723125e-02	ci left: 1.789255e-02	ci right 1.895065e-02	k: 4604	n:250000
Cons ci ratio: 6.690104e-03	ci left: 5.767055e-01	ci right 5.805806e-01	k: 144661	n:250000
KS ci ratio: 2.006742e-01	ci left: 1.371096e-03	ci right 1.680645e-03	k: 380	n:250000
TRIM65   250000 perm   71 sec   (3506 perm/sec)   p_kst 1.520000e-03   p_cons 5.786440e-01   p_joint 1.841600e-02

Joint ci ratio: 5.627088e-02	ci left: 1.780722e-02	ci right 1.884202e-02	k: 4763	n:260000
Cons ci ratio: 6.558710e-03	ci left: 5.768531e-01	ci right 5.806528e-01	k: 150476	n:260000
KS ci ratio: 1.973367e-01	ci left: 1.365870e-03	ci right 1.668494e-03	k: 393	n:260000
TRIM65   260000 perm   75 sec   (3460 perm/sec)   p_kst 1.511538e-03   p_cons 5.787538e-01   p_joint 1.831923e-02

Joint ci ratio: 5.532292e-02	ci left: 1.775026e-02	ci right 1.876382e-02	k: 4928	n:270000
Cons ci ratio: 6.437063e-03	ci left: 5.768163e-01	ci right 5.805450e-01	k: 156244	n:270000
KS ci ratio: 1.946399e-01	ci left: 1.354023e-03	ci right 1.649436e-03	k: 404	n:270000
TRIM65   270000 perm   79 sec   (3415 perm/sec)   p_kst 1.496296e-03   p_cons 5.786815e-01   p_joint 1.825185e-02

Joint ci ratio: 5.437783e-02	ci left: 1.772570e-02	ci right 1.872002e-02	k: 5101	n:280000
Cons ci ratio: 6.318008e-03	ci left: 5.770865e-01	ci right 5.807476e-01	k: 162097	n:280000
KS ci ratio: 1.906784e-01	ci left: 1.363451e-03	ci right 1.654166e-03	k: 421	n:280000
TRIM65   280000 perm   83 sec   (3372 perm/sec)   p_kst 1.503571e-03   p_cons 5.789179e-01   p_joint 1.821786e-02

Joint ci ratio: 7.635440e-02	ci left: 8.662851e-03	ci right 9.353912e-03	k: 2611	n:290000
Cons ci ratio: 6.209623e-03	ci left: 5.770005e-01	ci right 5.805980e-01	k: 167852	n:290000
KS ci ratio: 1.875925e-01	ci left: 1.362426e-03	ci right 1.647685e-03	k: 435	n:290000
TRIM65   290000 perm   87 sec   (3334 perm/sec)   p_kst 1.500000e-03   p_cons 5.788000e-01   p_joint 9.003448e-03

Joint ci ratio: 5.401433e-02	ci left: 1.678709e-02	ci right 1.772227e-02	k: 5175	n:300000
Cons ci ratio: 6.106338e-03	ci left: 5.769440e-01	ci right 5.804811e-01	k: 173614	n:300000
KS ci ratio: 1.848574e-01	ci left: 1.358325e-03	ci right 1.638114e-03	k: 448	n:300000
TRIM65   300000 perm   91 sec   (3299 perm/sec)   p_kst 1.493333e-03   p_cons 5.787133e-01   p_joint 1.725000e-02

Joint ci ratio: 7.393234e-02	ci left: 8.654700e-03	ci right 9.322269e-03	k: 2785	n:310000
Cons ci ratio: 6.006809e-03	ci left: 5.769918e-01	ci right 5.804713e-01	k: 179407	n:310000
KS ci ratio: 1.808715e-01	ci left: 1.376072e-03	ci right 1.652736e-03	k: 468	n:310000
TRIM65   310000 perm   95 sec   (3261 perm/sec)   p_kst 1.509677e-03   p_cons 5.787323e-01   p_joint 8.983871e-03

Joint ci ratio: 7.272807e-02	ci left: 8.669539e-03	ci right 9.326899e-03	k: 2878	n:320000
Cons ci ratio: 5.913092e-03	ci left: 5.769463e-01	ci right 5.803710e-01	k: 185171	n:320000
KS ci ratio: 1.778628e-01	ci left: 1.380825e-03	ci right 1.653330e-03	k: 484	n:320000
TRIM65   320000 perm   99 sec   (3227 perm/sec)   p_kst 1.512500e-03   p_cons 5.786594e-01   p_joint 8.993750e-03

Joint ci ratio: 7.148377e-02	ci left: 8.707374e-03	ci right 9.355838e-03	k: 2979	n:330000
Cons ci ratio: 5.823122e-03	ci left: 5.769464e-01	ci right 5.803189e-01	k: 190949	n:330000
KS ci ratio: 1.757033e-01	ci left: 1.373736e-03	ci right 1.641201e-03	k: 496	n:330000
TRIM65   330000 perm   103 sec   (3192 perm/sec)   p_kst 1.503030e-03   p_cons 5.786333e-01   p_joint 9.027273e-03

Joint ci ratio: 7.052099e-02	ci left: 8.688166e-03	ci right 9.326127e-03	k: 3061	n:340000
Cons ci ratio: 5.741222e-03	ci left: 5.765997e-01	ci right 5.799225e-01	k: 196609	n:340000
KS ci ratio: 1.741353e-01	ci left: 1.358643e-03	ci right 1.620560e-03	k: 505	n:340000
TRIM65   340000 perm   108 sec   (3154 perm/sec)   p_kst 1.485294e-03   p_cons 5.782618e-01   p_joint 9.002941e-03

Joint ci ratio: 6.366939e-02	ci left: 1.037302e-02	ci right 1.105797e-02	k: 3749	n:350000
Cons ci ratio: 5.662444e-03	ci left: 5.762931e-01	ci right 5.795684e-01	k: 202276	n:350000
KS ci ratio: 1.714455e-01	ci left: 1.363562e-03	ci right 1.621947e-03	k: 521	n:350000
TRIM65   350000 perm   112 sec   (3117 perm/sec)   p_kst 1.488571e-03   p_cons 5.779314e-01   p_joint 1.071143e-02

Joint ci ratio: 6.278004e-02	ci left: 1.037740e-02	ci right 1.105273e-02	k: 3856	n:360000
Cons ci ratio: 5.584591e-03	ci left: 5.761985e-01	ci right 5.794280e-01	k: 208013	n:360000
KS ci ratio: 1.680962e-01	ci left: 1.381541e-03	ci right 1.637701e-03	k: 542	n:360000
TRIM65   360000 perm   117 sec   (3081 perm/sec)   p_kst 1.505556e-03   p_cons 5.778139e-01   p_joint 1.071111e-02

Joint ci ratio: 6.194275e-02	ci left: 1.037629e-02	ci right 1.104221e-02	k: 3961	n:370000
Cons ci ratio: 5.513007e-03	ci left: 5.758307e-01	ci right 5.790167e-01	k: 213647	n:370000
KS ci ratio: 1.653768e-01	ci left: 1.390822e-03	ci right 1.644115e-03	k: 560	n:370000
TRIM65   370000 perm   121 sec   (3047 perm/sec)   p_kst 1.513514e-03   p_cons 5.774243e-01   p_joint 1.070541e-02

Joint ci ratio: 6.113809e-02	ci left: 1.037530e-02	ci right 1.103220e-02	k: 4066	n:380000
Cons ci ratio: 5.439317e-03	ci left: 5.759118e-01	ci right 5.790555e-01	k: 219444	n:380000
KS ci ratio: 1.627853e-01	ci left: 1.399645e-03	ci right 1.650160e-03	k: 578	n:380000
TRIM65   380000 perm   126 sec   (3014 perm/sec)   p_kst 1.521053e-03   p_cons 5.774842e-01   p_joint 1.070000e-02

Joint ci ratio: 5.982280e-02	ci left: 1.056385e-02	ci right 1.121781e-02	k: 4246	n:390000
Cons ci ratio: 5.369266e-03	ci left: 5.759197e-01	ci right 5.790228e-01	k: 225214	n:390000
KS ci ratio: 1.608525e-01	ci left: 1.398200e-03	ci right 1.645198e-03	k: 592	n:390000
TRIM65   390000 perm   131 sec   (2983 perm/sec)   p_kst 1.517949e-03   p_cons 5.774718e-01   p_joint 1.088718e-02

Joint ci ratio: 5.904903e-02	ci left: 1.057560e-02	ci right 1.122152e-02	k: 4358	n:400000
Cons ci ratio: 5.303375e-03	ci left: 5.757873e-01	ci right 5.788515e-01	k: 230928	n:400000
KS ci ratio: 1.580767e-01	ci left: 1.413651e-03	ci right 1.658660e-03	k: 613	n:400000
TRIM65   400000 perm   136 sec   (2952 perm/sec)   p_kst 1.532500e-03   p_cons 5.773200e-01   p_joint 1.089500e-02

Joint ci ratio: 5.816657e-02	ci left: 1.063730e-02	ci right 1.127696e-02	k: 4491	n:410000
Cons ci ratio: 5.238018e-03	ci left: 5.758325e-01	ci right 5.788591e-01	k: 236712	n:410000
KS ci ratio: 1.558088e-01	ci left: 1.421351e-03	ci right 1.663830e-03	k: 631	n:410000
TRIM65   410000 perm   140 sec   (2922 perm/sec)   p_kst 1.539024e-03   p_cons 5.773463e-01   p_joint 1.095366e-02

Joint ci ratio: 5.747980e-02	ci left: 1.063746e-02	ci right 1.126932e-02	k: 4599	n:420000
Cons ci ratio: 5.174136e-03	ci left: 5.759591e-01	ci right 5.789493e-01	k: 242531	n:420000
KS ci ratio: 1.542311e-01	ci left: 1.417260e-03	ci right 1.656367e-03	k: 644	n:420000
TRIM65   420000 perm   145 sec   (2892 perm/sec)   p_kst 1.533333e-03   p_cons 5.774548e-01   p_joint 1.095000e-02

Joint ci ratio: 5.711189e-02	ci left: 1.052759e-02	ci right 1.114879e-02	k: 4659	n:430000
Cons ci ratio: 5.111804e-03	ci left: 5.761499e-01	ci right 5.791049e-01	k: 248380	n:430000
KS ci ratio: 1.524685e-01	ci left: 1.417846e-03	ci right 1.654069e-03	k: 659	n:430000
TRIM65   430000 perm   150 sec   (2863 perm/sec)   p_kst 1.532558e-03   p_cons 5.776279e-01   p_joint 1.083488e-02

Joint ci ratio: 5.611146e-02	ci left: 1.066252e-02	ci right 1.128031e-02	k: 4826	n:440000
Cons ci ratio: 5.054000e-03	ci left: 5.761070e-01	ci right 5.790283e-01	k: 254130	n:440000
KS ci ratio: 1.513273e-01	ci left: 1.407485e-03	ci right 1.640067e-03	k: 669	n:440000
TRIM65   440000 perm   155 sec   (2835 perm/sec)   p_kst 1.520455e-03   p_cons 5.775682e-01   p_joint 1.096818e-02

Joint ci ratio: 5.745686e-02	ci left: 9.943522e-03	ci right 1.053392e-02	k: 4606	n:450000
Cons ci ratio: 4.998432e-03	ci left: 5.760352e-01	ci right 5.789238e-01	k: 259866	n:450000
KS ci ratio: 1.496613e-01	ci left: 1.408286e-03	ci right 1.638209e-03	k: 684	n:450000
TRIM65   450000 perm   160 sec   (2806 perm/sec)   p_kst 1.520000e-03   p_cons 5.774800e-01   p_joint 1.023556e-02

Joint ci ratio: 5.703346e-02	ci left: 9.875202e-03	ci right 1.045708e-02	k: 4675	n:460000
Cons ci ratio: 4.946024e-03	ci left: 5.758317e-01	ci right 5.786890e-01	k: 265540	n:460000
KS ci ratio: 1.484746e-01	ci left: 1.400692e-03	ci right 1.627401e-03	k: 695	n:460000
TRIM65   460000 perm   166 sec   (2778 perm/sec)   p_kst 1.510870e-03   p_cons 5.772609e-01   p_joint 1.016304e-02

Joint ci ratio: 5.671593e-02	ci left: 9.776239e-03	ci right 1.034897e-02	k: 4728	n:470000
Cons ci ratio: 4.892817e-03	ci left: 5.758777e-01	ci right 5.787043e-01	k: 271327	n:470000
KS ci ratio: 1.474201e-01	ci left: 1.391378e-03	ci right 1.614839e-03	k: 705	n:470000
TRIM65   470000 perm   171 sec   (2750 perm/sec)   p_kst 1.500000e-03   p_cons 5.772915e-01   p_joint 1.005957e-02

Joint ci ratio: 5.546234e-02	ci left: 1.001424e-02	ci right 1.058753e-02	k: 4943	n:480000
Cons ci ratio: 4.842428e-03	ci left: 5.758072e-01	ci right 5.786043e-01	k: 277059	n:480000
KS ci ratio: 1.464903e-01	ci left: 1.380451e-03	ci right 1.600637e-03	k: 714	n:480000
TRIM65   480000 perm   176 sec   (2724 perm/sec)   p_kst 1.487500e-03   p_cons 5.772063e-01   p_joint 1.029792e-02

Joint ci ratio: 5.554204e-02	ci left: 9.783670e-03	ci right 1.034460e-02	k: 4930	n:490000
Cons ci ratio: 4.791520e-03	ci left: 5.759481e-01	ci right 5.787163e-01	k: 282893	n:490000
KS ci ratio: 1.452767e-01	ci left: 1.375874e-03	ci right 1.593354e-03	k: 726	n:490000
TRIM65   490000 perm   182 sec   (2696 perm/sec)   p_kst 1.481633e-03   p_cons 5.773327e-01   p_joint 1.006122e-02

Joint ci ratio: 5.470789e-02	ci left: 9.885847e-03	ci right 1.044385e-02	k: 5081	n:500000
Cons ci ratio: 4.742086e-03	ci left: 5.760934e-01	ci right 5.788337e-01	k: 288732	n:500000
KS ci ratio: 1.434141e-01	ci left: 1.384985e-03	ci right 1.600858e-03	k: 745	n:500000
TRIM65   500000 perm   187 sec   (2670 perm/sec)   p_kst 1.490000e-03   p_cons 5.774640e-01   p_joint 1.016200e-02

Joint ci ratio: 5.428878e-02	ci left: 9.844793e-03	ci right 1.039609e-02	k: 5160	n:510000
Cons ci ratio: 4.696302e-03	ci left: 5.760095e-01	ci right 5.787229e-01	k: 294457	n:510000
KS ci ratio: 1.415288e-01	ci left: 1.395647e-03	ci right 1.610080e-03	k: 765	n:510000
TRIM65   510000 perm   193 sec   (2643 perm/sec)   p_kst 1.500000e-03   p_cons 5.773667e-01   p_joint 1.011765e-02

Joint ci ratio: 4.174453e-02	ci left: 1.632679e-02	ci right 1.702476e-02	k: 8670	n:520000
Cons ci ratio: 4.651305e-03	ci left: 5.759829e-01	ci right 5.786701e-01	k: 300210	n:520000
KS ci ratio: 1.401631e-01	ci left: 1.396637e-03	ci right 1.608979e-03	k: 780	n:520000
TRIM65   520000 perm   199 sec   (2613 perm/sec)   p_kst 1.500000e-03   p_cons 5.773269e-01   p_joint 1.667308e-02

Joint ci ratio: 4.119211e-02	ci left: 1.645382e-02	ci right 1.714770e-02	k: 8903	n:530000
Cons ci ratio: 4.607399e-03	ci left: 5.759763e-01	ci right 5.786380e-01	k: 305973	n:530000
KS ci ratio: 1.388362e-01	ci left: 1.397600e-03	ci right 1.607910e-03	k: 795	n:530000
TRIM65   530000 perm   205 sec   (2585 perm/sec)   p_kst 1.500000e-03   p_cons 5.773075e-01   p_joint 1.679811e-02

Joint ci ratio: 4.082265e-02	ci left: 1.644605e-02	ci right 1.713323e-02	k: 9065	n:540000
Cons ci ratio: 4.566151e-03	ci left: 5.758162e-01	ci right 5.784533e-01	k: 311653	n:540000
KS ci ratio: 1.371236e-01	ci left: 1.407477e-03	ci right 1.616448e-03	k: 815	n:540000
TRIM65   540000 perm   211 sec   (2558 perm/sec)   p_kst 1.509259e-03   p_cons 5.771352e-01   p_joint 1.678704e-02

Joint ci ratio: 4.041844e-02	ci left: 1.647458e-02	ci right 1.715598e-02	k: 9247	n:550000
Cons ci ratio: 4.524304e-03	ci left: 5.758440e-01	ci right 5.784570e-01	k: 317433	n:550000
KS ci ratio: 1.360445e-01	ci left: 1.404715e-03	ci right 1.611502e-03	k: 828	n:550000
TRIM65   550000 perm   217 sec   (2530 perm/sec)   p_kst 1.505455e-03   p_cons 5.771509e-01   p_joint 1.681273e-02

Joint ci ratio: 5.211588e-02	ci left: 9.741046e-03	ci right 1.026404e-02	k: 5600	n:560000
Cons ci ratio: 4.483161e-03	ci left: 5.759174e-01	ci right 5.785068e-01	k: 323239	n:560000
KS ci ratio: 1.350708e-01	ci left: 1.400333e-03	ci right 1.604880e-03	k: 840	n:560000
TRIM65   560000 perm   224 sec   (2499 perm/sec)   p_kst 1.500000e-03   p_cons 5.772125e-01   p_joint 1.000000e-02

Joint ci ratio: 5.124972e-02	ci left: 9.899197e-03	ci right 1.042159e-02	k: 5790	n:570000
Cons ci ratio: 4.444398e-03	ci left: 5.758478e-01	ci right 5.784145e-01	k: 328965	n:570000
KS ci ratio: 1.343545e-01	ci left: 1.391022e-03	ci right 1.593046e-03	k: 849	n:570000
TRIM65   570000 perm   231 sec   (2471 perm/sec)   p_kst 1.489474e-03   p_cons 5.771316e-01   p_joint 1.015789e-02

Joint ci ratio: 5.083038e-02	ci left: 9.891925e-03	ci right 1.040954e-02	k: 5886	n:580000
Cons ci ratio: 4.405316e-03	ci left: 5.759257e-01	ci right 5.784701e-01	k: 334775	n:580000
KS ci ratio: 1.334164e-01	ci left: 1.387036e-03	ci right 1.586962e-03	k: 861	n:580000
TRIM65   580000 perm   237 sec   (2448 perm/sec)   p_kst 1.484483e-03   p_cons 5.771983e-01   p_joint 1.014828e-02

Joint ci ratio: 5.082172e-02	ci left: 9.729265e-03	ci right 1.023828e-02	k: 5889	n:590000
Cons ci ratio: 4.368885e-03	ci left: 5.758179e-01	ci right 5.783407e-01	k: 340477	n:590000
KS ci ratio: 1.325736e-01	ci left: 1.381550e-03	ci right 1.579329e-03	k: 872	n:590000
TRIM65   590000 perm   243 sec   (2427 perm/sec)   p_kst 1.477966e-03   p_cons 5.770797e-01   p_joint 9.981356e-03

Joint ci ratio: 5.043825e-02	ci left: 9.715209e-03	ci right 1.021954e-02	k: 5979	n:600000
Cons ci ratio: 4.332706e-03	ci left: 5.757854e-01	ci right 5.782872e-01	k: 346222	n:600000
KS ci ratio: 1.315976e-01	ci left: 1.379475e-03	ci right 1.575389e-03	k: 885	n:600000
TRIM65   600000 perm   249 sec   (2405 perm/sec)   p_kst 1.475000e-03   p_cons 5.770367e-01   p_joint 9.965000e-03

Joint ci ratio: 4.953844e-02	ci left: 9.908878e-03	ci right 1.041382e-02	k: 6197	n:610000
Cons ci ratio: 4.296214e-03	ci left: 5.758902e-01	ci right 5.783713e-01	k: 352050	n:610000
KS ci ratio: 1.306428e-01	ci left: 1.377473e-03	ci right 1.571574e-03	k: 898	n:610000
TRIM65   610000 perm   256 sec   (2385 perm/sec)   p_kst 1.472131e-03   p_cons 5.771311e-01   p_joint 1.015902e-02

Joint ci ratio: 4.958296e-02	ci left: 9.733107e-03	ci right 1.022955e-02	k: 6187	n:620000
Cons ci ratio: 4.261712e-03	ci left: 5.758675e-01	ci right 5.783285e-01	k: 357801	n:620000
KS ci ratio: 1.297798e-01	ci left: 1.373980e-03	ci right 1.566211e-03	k: 910	n:620000
TRIM65   620000 perm   262 sec   (2362 perm/sec)   p_kst 1.467742e-03   p_cons 5.770984e-01   p_joint 9.979032e-03

Joint ci ratio: 5.158584e-02	ci left: 8.848177e-03	ci right 9.318258e-03	k: 5721	n:630000
Cons ci ratio: 4.228001e-03	ci left: 5.758488e-01	ci right 5.782902e-01	k: 363554	n:630000
KS ci ratio: 1.287244e-01	ci left: 1.375210e-03	ci right 1.565929e-03	k: 925	n:630000
TRIM65   630000 perm   269 sec   (2341 perm/sec)   p_kst 1.468254e-03   p_cons 5.770698e-01   p_joint 9.080952e-03

Joint ci ratio: 5.116271e-02	ci left: 8.856456e-03	ci right 9.323004e-03	k: 5816	n:640000
Cons ci ratio: 4.194742e-03	ci left: 5.758698e-01	ci right 5.782920e-01	k: 369332	n:640000
KS ci ratio: 1.276943e-01	ci left: 1.376408e-03	ci right 1.565650e-03	k: 940	n:640000
TRIM65   640000 perm   276 sec   (2321 perm/sec)   p_kst 1.468750e-03   p_cons 5.770812e-01   p_joint 9.087500e-03

Joint ci ratio: 5.025041e-02	ci left: 9.042243e-03	ci right 9.509838e-03	k: 6028	n:650000
Cons ci ratio: 4.164040e-03	ci left: 5.756809e-01	ci right 5.780846e-01	k: 374974	n:650000
KS ci ratio: 1.266222e-01	ci left: 1.379065e-03	ci right 1.566961e-03	k: 956	n:650000
TRIM65   650000 perm   282 sec   (2302 perm/sec)   p_kst 1.470769e-03   p_cons 5.768831e-01   p_joint 9.273846e-03

Joint ci ratio: 5.035522e-02	ci left: 8.869314e-03	ci right 9.328950e-03	k: 6004	n:660000
Cons ci ratio: 4.132372e-03	ci left: 5.756903e-01	ci right 5.780757e-01	k: 380743	n:660000
KS ci ratio: 1.263594e-01	ci left: 1.364039e-03	ci right 1.549472e-03	k: 960	n:660000
TRIM65   660000 perm   289 sec   (2283 perm/sec)   p_kst 1.454545e-03   p_cons 5.768833e-01   p_joint 9.096970e-03

Joint ci ratio: 5.004843e-02	ci left: 8.845994e-03	ci right 9.301549e-03	k: 6078	n:670000
Cons ci ratio: 4.101842e-03	ci left: 5.756487e-01	ci right 5.780163e-01	k: 386478	n:670000
KS ci ratio: 1.257075e-01	ci left: 1.358134e-03	ci right 1.541742e-03	k: 970	n:670000
TRIM65   670000 perm   296 sec   (2264 perm/sec)   p_kst 1.447761e-03   p_cons 5.768328e-01   p_joint 9.071642e-03

Joint ci ratio: 5.018107e-02	ci left: 8.670870e-03	ci right 9.118623e-03	k: 6047	n:680000
Cons ci ratio: 4.071242e-03	ci left: 5.756967e-01	ci right 5.780467e-01	k: 392273	n:680000
KS ci ratio: 1.247476e-01	ci left: 1.359530e-03	ci right 1.541819e-03	k: 985	n:680000
TRIM65   680000 perm   303 sec   (2245 perm/sec)   p_kst 1.448529e-03   p_cons 5.768721e-01   p_joint 8.892647e-03

Joint ci ratio: 4.711356e-02	ci left: 9.699242e-03	ci right 1.016865e-02	k: 6853	n:690000
Cons ci ratio: 4.041366e-03	ci left: 5.757376e-01	ci right 5.780705e-01	k: 398064	n:690000
KS ci ratio: 1.239334e-01	ci left: 1.358081e-03	ci right 1.538900e-03	k: 998	n:690000
TRIM65   690000 perm   310 sec   (2228 perm/sec)   p_kst 1.446377e-03   p_cons 5.769043e-01   p_joint 9.931884e-03

Joint ci ratio: 4.670577e-02	ci left: 9.730103e-03	ci right 1.019682e-02	k: 6973	n:700000
Cons ci ratio: 4.012161e-03	ci left: 5.757745e-01	ci right 5.780906e-01	k: 403853	n:700000
KS ci ratio: 1.227107e-01	ci left: 1.366370e-03	ci right 1.546368e-03	k: 1018	n:700000
TRIM65   700000 perm   317 sec   (2209 perm/sec)   p_kst 1.454286e-03   p_cons 5.769329e-01   p_joint 9.961429e-03

Joint ci ratio: 4.804174e-02	ci left: 9.066895e-03	ci right 9.514587e-03	k: 6595	n:710000
Cons ci ratio: 3.982948e-03	ci left: 5.758879e-01	ci right 5.781876e-01	k: 409697	n:710000
KS ci ratio: 1.213481e-01	ci left: 1.378531e-03	ci right 1.557970e-03	k: 1041	n:710000
TRIM65   710000 perm   324 sec   (2190 perm/sec)   p_kst 1.466197e-03   p_cons 5.770380e-01   p_joint 9.288732e-03

Joint ci ratio: 4.771019e-02	ci left: 9.067214e-03	ci right 9.511747e-03	k: 6687	n:720000
Cons ci ratio: 3.955500e-03	ci left: 5.758579e-01	ci right 5.781415e-01	k: 415440	n:720000
KS ci ratio: 1.203700e-01	ci left: 1.382283e-03	ci right 1.560656e-03	k: 1058	n:720000
TRIM65   720000 perm   332 sec   (2171 perm/sec)   p_kst 1.469444e-03   p_cons 5.770000e-01   p_joint 9.287500e-03

Joint ci ratio: 4.767729e-02	ci left: 8.956529e-03	ci right 9.395324e-03	k: 6697	n:730000
Cons ci ratio: 3.928171e-03	ci left: 5.758835e-01	ci right 5.781515e-01	k: 421223	n:730000
KS ci ratio: 1.196940e-01	ci left: 1.379292e-03	ci right 1.556209e-03	k: 1070	n:730000
TRIM65   730000 perm   339 sec   (2154 perm/sec)   p_kst 1.465753e-03   p_cons 5.770178e-01   p_joint 9.173973e-03

Joint ci ratio: 4.735671e-02	ci left: 8.957007e-03	ci right 9.392794e-03	k: 6788	n:740000
Cons ci ratio: 3.901249e-03	ci left: 5.759275e-01	ci right 5.781800e-01	k: 427020	n:740000
KS ci ratio: 1.188097e-01	ci left: 1.381630e-03	ci right 1.557445e-03	k: 1086	n:740000
TRIM65   740000 perm   346 sec   (2136 perm/sec)   p_kst 1.467568e-03   p_cons 5.770541e-01   p_joint 9.172973e-03

Joint ci ratio: 5.657119e-02	ci left: 6.181330e-03	ci right 6.542499e-03	k: 4770	n:750000
Cons ci ratio: 3.875170e-03	ci left: 5.759330e-01	ci right 5.781704e-01	k: 432789	n:750000
KS ci ratio: 1.182673e-01	ci left: 1.376146e-03	ci right 1.550408e-03	k: 1096	n:750000
TRIM65   750000 perm   354 sec   (2119 perm/sec)   p_kst 1.461333e-03   p_cons 5.770520e-01   p_joint 6.360000e-03

Joint ci ratio: 5.620137e-02	ci left: 6.181723e-03	ci right 6.540477e-03	k: 4833	n:760000
Cons ci ratio: 3.849472e-03	ci left: 5.759555e-01	ci right 5.781782e-01	k: 438571	n:760000
KS ci ratio: 1.173612e-01	ci left: 1.379748e-03	ci right 1.553035e-03	k: 1113	n:760000
TRIM65   760000 perm   361 sec   (2103 perm/sec)   p_kst 1.464474e-03   p_cons 5.770671e-01   p_joint 6.359211e-03

Joint ci ratio: 6.227489e-02	ci left: 4.960012e-03	ci right 5.280092e-03	k: 3941	n:770000
Cons ci ratio: 3.824472e-03	ci left: 5.759528e-01	ci right 5.781610e-01	k: 444334	n:770000
KS ci ratio: 1.163727e-01	ci left: 1.385783e-03	ci right 1.558262e-03	k: 1132	n:770000
TRIM65   770000 perm   369 sec   (2087 perm/sec)   p_kst 1.470130e-03   p_cons 5.770571e-01   p_joint 5.118182e-03

Joint ci ratio: 6.194613e-02	ci left: 4.949431e-03	ci right 5.267082e-03	k: 3983	n:780000
Cons ci ratio: 3.800112e-03	ci left: 5.759296e-01	ci right 5.781236e-01	k: 450081	n:780000
KS ci ratio: 1.159136e-01	ci left: 1.379220e-03	ci right 1.550158e-03	k: 1141	n:780000
TRIM65   780000 perm   377 sec   (2072 perm/sec)   p_kst 1.462821e-03   p_cons 5.770269e-01   p_joint 5.106410e-03

Joint ci ratio: 6.156107e-02	ci left: 4.949094e-03	ci right 5.264678e-03	k: 4033	n:790000
Cons ci ratio: 3.775595e-03	ci left: 5.759869e-01	ci right 5.781670e-01	k: 455891	n:790000
KS ci ratio: 1.152097e-01	ci left: 1.378971e-03	ci right 1.548769e-03	k: 1155	n:790000
TRIM65   790000 perm   384 sec   (2056 perm/sec)   p_kst 1.462025e-03   p_cons 5.770772e-01   p_joint 5.105063e-03

Joint ci ratio: 6.120571e-02	ci left: 4.945078e-03	ci right 5.258522e-03	k: 4080	n:800000
Cons ci ratio: 3.751384e-03	ci left: 5.760641e-01	ci right 5.782304e-01	k: 461718	n:800000
KS ci ratio: 1.145183e-01	ci left: 1.378731e-03	ci right 1.547412e-03	k: 1169	n:800000
TRIM65   800000 perm   392 sec   (2041 perm/sec)   p_kst 1.461250e-03   p_cons 5.771475e-01   p_joint 5.100000e-03

Joint ci ratio: 6.090093e-02	ci left: 4.933871e-03	ci right 5.244993e-03	k: 4121	n:810000
Cons ci ratio: 3.728065e-03	ci left: 5.760825e-01	ci right 5.782354e-01	k: 467499	n:810000
KS ci ratio: 1.139840e-01	ci left: 1.374901e-03	ci right 1.542277e-03	k: 1180	n:810000
TRIM65   810000 perm   400 sec   (2025 perm/sec)   p_kst 1.456790e-03   p_cons 5.771593e-01   p_joint 5.087654e-03

Joint ci ratio: 6.049850e-02	ci left: 4.939758e-03	ci right 5.249120e-03	k: 4176	n:820000
Cons ci ratio: 3.705241e-03	ci left: 5.760921e-01	ci right 5.782318e-01	k: 473273	n:820000
KS ci ratio: 1.133619e-01	ci left: 1.373537e-03	ci right 1.539773e-03	k: 1193	n:820000
TRIM65   820000 perm   408 sec   (2010 perm/sec)   p_kst 1.454878e-03   p_cons 5.771622e-01   p_joint 5.092683e-03

Joint ci ratio: 6.015397e-02	ci left: 4.937201e-03	ci right 5.244581e-03	k: 4224	n:830000
Cons ci ratio: 3.682759e-03	ci left: 5.761110e-01	ci right 5.782378e-01	k: 479055	n:830000
KS ci ratio: 1.126565e-01	ci left: 1.374550e-03	ci right 1.539804e-03	k: 1208	n:830000
TRIM65   830000 perm   416 sec   (1995 perm/sec)   p_kst 1.455422e-03   p_cons 5.771747e-01   p_joint 5.089157e-03

Joint ci ratio: 5.974503e-02	ci left: 4.946439e-03	ci right 5.252228e-03	k: 4282	n:840000
Cons ci ratio: 3.660832e-03	ci left: 5.761094e-01	ci right 5.782234e-01	k: 484820	n:840000
KS ci ratio: 1.120557e-01	ci left: 1.373227e-03	ci right 1.537384e-03	k: 1221	n:840000
TRIM65   840000 perm   424 sec   (1979 perm/sec)   p_kst 1.453571e-03   p_cons 5.771667e-01   p_joint 5.097619e-03

Joint ci ratio: 5.943383e-02	ci left: 4.940397e-03	ci right 5.244167e-03	k: 4327	n:850000
Cons ci ratio: 3.639310e-03	ci left: 5.761054e-01	ci right 5.782070e-01	k: 490583	n:850000
KS ci ratio: 1.116003e-01	ci left: 1.368507e-03	ci right 1.531391e-03	k: 1231	n:850000
TRIM65   850000 perm   433 sec   (1963 perm/sec)   p_kst 1.448235e-03   p_cons 5.771565e-01   p_joint 5.090588e-03

Joint ci ratio: 5.291109e-02	ci left: 6.174022e-03	ci right 6.510712e-03	k: 5453	n:860000
Cons ci ratio: 3.618008e-03	ci left: 5.761225e-01	ci right 5.782118e-01	k: 496364	n:860000
KS ci ratio: 1.108825e-01	ci left: 1.370682e-03	ci right 1.532706e-03	k: 1247	n:860000
TRIM65   860000 perm   442 sec   (1948 perm/sec)   p_kst 1.450000e-03   p_cons 5.771674e-01   p_joint 6.340698e-03

Joint ci ratio: 5.875894e-02	ci left: 4.940069e-03	ci right 5.240252e-03	k: 4427	n:870000
Cons ci ratio: 3.596305e-03	ci left: 5.762439e-01	ci right 5.783211e-01	k: 502236	n:870000
KS ci ratio: 1.104412e-01	ci left: 1.366102e-03	ci right 1.526901e-03	k: 1257	n:870000
TRIM65   870000 perm   450 sec   (1933 perm/sec)   p_kst 1.444828e-03   p_cons 5.772828e-01   p_joint 5.088506e-03

Joint ci ratio: 5.985741e-02	ci left: 4.704793e-03	ci right 4.996209e-03	k: 4267	n:880000
Cons ci ratio: 3.575978e-03	ci left: 5.762273e-01	ci right 5.782927e-01	k: 507989	n:880000
KS ci ratio: 1.098318e-01	ci left: 1.366049e-03	ci right 1.525897e-03	k: 1271	n:880000
TRIM65   880000 perm   459 sec   (1919 perm/sec)   p_kst 1.444318e-03   p_cons 5.772602e-01   p_joint 4.848864e-03

Joint ci ratio: 5.317243e-02	ci left: 5.908235e-03	ci right 6.232071e-03	k: 5401	n:890000
Cons ci ratio: 3.555329e-03	ci left: 5.763021e-01	ci right 5.783558e-01	k: 513823	n:890000
KS ci ratio: 1.094885e-01	ci left: 1.359443e-03	ci right 1.517988e-03	k: 1279	n:890000
TRIM65   890000 perm   467 sec   (1904 perm/sec)   p_kst 1.437079e-03   p_cons 5.773292e-01   p_joint 6.068539e-03

Joint ci ratio: 4.344577e-02	ci left: 8.769641e-03	ci right 9.160196e-03	k: 8067	n:900000
Cons ci ratio: 3.535637e-03	ci left: 5.762920e-01	ci right 5.783342e-01	k: 519582	n:900000
KS ci ratio: 1.086845e-01	ci left: 1.364873e-03	ci right 1.522808e-03	k: 1298	n:900000
TRIM65   900000 perm   476 sec   (1890 perm/sec)   p_kst 1.442222e-03   p_cons 5.773133e-01   p_joint 8.963333e-03

Joint ci ratio: 5.150028e-02	ci left: 6.163410e-03	ci right 6.490294e-03	k: 5756	n:910000
Cons ci ratio: 3.516016e-03	ci left: 5.763172e-01	ci right 5.783482e-01	k: 525373	n:910000
KS ci ratio: 1.081448e-01	ci left: 1.363773e-03	ci right 1.520747e-03	k: 1311	n:910000
TRIM65   910000 perm   485 sec   (1875 perm/sec)   p_kst 1.440659e-03   p_cons 5.773330e-01   p_joint 6.325275e-03

Joint ci ratio: 5.116332e-02	ci left: 6.177966e-03	ci right 6.503415e-03	k: 5832	n:920000
Cons ci ratio: 3.497037e-03	ci left: 5.762974e-01	ci right 5.783173e-01	k: 531123	n:920000
KS ci ratio: 1.075724e-01	ci left: 1.363756e-03	ci right 1.519845e-03	k: 1325	n:920000
TRIM65   920000 perm   494 sec   (1861 perm/sec)   p_kst 1.440217e-03   p_cons 5.773076e-01   p_joint 6.339130e-03

Joint ci ratio: 4.270037e-02	ci left: 8.788839e-03	ci right 9.173368e-03	k: 8351	n:930000
Cons ci ratio: 3.477833e-03	ci left: 5.763523e-01	ci right 5.783612e-01	k: 536942	n:930000
KS ci ratio: 1.070891e-01	ci left: 1.361649e-03	ci right 1.516752e-03	k: 1337	n:930000
TRIM65   930000 perm   504 sec   (1847 perm/sec)   p_kst 1.437634e-03   p_cons 5.773570e-01   p_joint 8.979570e-03

Joint ci ratio: 4.361802e-02	ci left: 8.333289e-03	ci right 8.705919e-03	k: 8007	n:940000
Cons ci ratio: 3.459228e-03	ci left: 5.763655e-01	ci right 5.783638e-01	k: 542723	n:940000
KS ci ratio: 1.065727e-01	ci left: 1.360623e-03	ci right 1.514816e-03	k: 1350	n:940000
TRIM65   940000 perm   512 sec   (1834 perm/sec)   p_kst 1.436170e-03   p_cons 5.773649e-01   p_joint 8.518085e-03

Joint ci ratio: 4.342626e-02	ci left: 8.319493e-03	ci right 8.689829e-03	k: 8078	n:950000
Cons ci ratio: 3.441535e-03	ci left: 5.762911e-01	ci right 5.782789e-01	k: 548421	n:950000
KS ci ratio: 1.061026e-01	ci left: 1.358596e-03	ci right 1.511838e-03	k: 1362	n:950000
TRIM65   950000 perm   522 sec   (1821 perm/sec)   p_kst 1.433684e-03   p_cons 5.772853e-01   p_joint 8.503158e-03

Joint ci ratio: 4.276068e-02	ci left: 8.492519e-03	ci right 8.864621e-03	k: 8330	n:960000
Cons ci ratio: 3.423548e-03	ci left: 5.762986e-01	ci right 5.782760e-01	k: 554196	n:960000
KS ci ratio: 1.056387e-01	ci left: 1.356613e-03	ci right 1.508920e-03	k: 1374	n:960000
TRIM65   960000 perm   531 sec   (1807 perm/sec)   p_kst 1.431250e-03   p_cons 5.772875e-01   p_joint 8.677083e-03

Joint ci ratio: 4.187190e-02	ci left: 8.767100e-03	ci right 9.143057e-03	k: 8685	n:970000
Cons ci ratio: 3.405760e-03	ci left: 5.763172e-01	ci right 5.782844e-01	k: 559982	n:970000
KS ci ratio: 1.051809e-01	ci left: 1.354672e-03	ci right 1.506062e-03	k: 1386	n:970000
TRIM65   970000 perm   540 sec   (1795 perm/sec)   p_kst 1.428866e-03   p_cons 5.773010e-01   p_joint 8.953608e-03

Joint ci ratio: 4.062973e-02	ci left: 9.217971e-03	ci right 9.601263e-03	k: 9220	n:980000
Cons ci ratio: 3.388510e-03	ci left: 5.762978e-01	ci right 5.782548e-01	k: 565731	n:980000
KS ci ratio: 1.047290e-01	ci left: 1.352773e-03	ci right 1.503260e-03	k: 1398	n:980000
TRIM65   980000 perm   550 sec   (1783 perm/sec)   p_kst 1.426531e-03   p_cons 5.772765e-01   p_joint 9.408163e-03

Joint ci ratio: 4.049009e-02	ci left: 9.188849e-03	ci right 9.569586e-03	k: 9284	n:990000
Cons ci ratio: 3.371330e-03	ci left: 5.763060e-01	ci right 5.782532e-01	k: 571507	n:990000
KS ci ratio: 1.045055e-01	ci left: 1.345010e-03	ci right 1.494295e-03	k: 1404	n:990000
TRIM65   990000 perm   559 sec   (1770 perm/sec)   p_kst 1.418182e-03   p_cons 5.772798e-01   p_joint 9.377778e-03

Joint ci ratio: 4.024770e-02	ci left: 9.207832e-03	ci right 9.587018e-03	k: 9396	n:1000000
Cons ci ratio: 3.354416e-03	ci left: 5.763131e-01	ci right 5.782505e-01	k: 577282	n:1000000
KS ci ratio: 1.040254e-01	ci left: 1.344221e-03	ci right 1.492691e-03	k: 1417	n:1000000
TRIM65   1000000 perm   569 sec   (1758 perm/sec)   p_kst 1.417000e-03   p_cons 5.772820e-01   p_joint 9.396000e-03

Joint ci ratio: 4.172703e-02	ci left: 8.481587e-03	ci right 8.844011e-03	k: 8748	n:1010000
Cons ci ratio: 3.337476e-03	ci left: 5.763606e-01	ci right 5.782884e-01	k: 583098	n:1010000
KS ci ratio: 1.034434e-01	ci left: 1.346342e-03	ci right 1.494164e-03	k: 1433	n:1010000
TRIM65   1010000 perm   579 sec   (1746 perm/sec)   p_kst 1.418812e-03   p_cons 5.773248e-01   p_joint 8.661386e-03

Joint ci ratio: 3.942556e-02	ci left: 9.409732e-03	ci right 9.789139e-03	k: 9790	n:1020000
Cons ci ratio: 3.321645e-03	ci left: 5.762818e-01	ci right 5.782001e-01	k: 588786	n:1020000
KS ci ratio: 1.029777e-01	ci left: 1.345559e-03	ci right 1.492590e-03	k: 1446	n:1020000
TRIM65   1020000 perm   588 sec   (1734 perm/sec)   p_kst 1.417647e-03   p_cons 5.772412e-01   p_joint 9.598039e-03

Joint ci ratio: 3.922968e-02	ci left: 9.412586e-03	ci right 9.790180e-03	k: 9888	n:1030000
Cons ci ratio: 3.305017e-03	ci left: 5.763550e-01	ci right 5.782640e-01	k: 594629	n:1030000
KS ci ratio: 1.026239e-01	ci left: 1.341954e-03	ci right 1.488057e-03	k: 1456	n:1030000
TRIM65   1030000 perm   598 sec   (1723 perm/sec)   p_kst 1.413592e-03   p_cons 5.773097e-01   p_joint 9.600000e-03

Joint ci ratio: 3.906435e-02	ci left: 9.402058e-03	ci right 9.777604e-03	k: 9972	n:1040000
Cons ci ratio: 3.288837e-03	ci left: 5.763970e-01	ci right 5.782968e-01	k: 600441	n:1040000
KS ci ratio: 1.020997e-01	ci left: 1.343105e-03	ci right 1.488541e-03	k: 1471	n:1040000
TRIM65   1040000 perm   608 sec   (1711 perm/sec)   p_kst 1.414423e-03   p_cons 5.773471e-01   p_joint 9.588462e-03

Joint ci ratio: 3.886209e-02	ci left: 9.410598e-03	ci right 9.784496e-03	k: 10076	n:1050000
Cons ci ratio: 3.273090e-03	ci left: 5.764087e-01	ci right 5.782994e-01	k: 606222	n:1050000
KS ci ratio: 1.016176e-01	ci left: 1.343307e-03	ci right 1.488037e-03	k: 1485	n:1050000
TRIM65   1050000 perm   618 sec   (1700 perm/sec)   p_kst 1.414286e-03   p_cons 5.773543e-01   p_joint 9.596190e-03

Joint ci ratio: 3.906001e-02	ci left: 9.228381e-03	ci right 9.596948e-03	k: 9976	n:1060000
Cons ci ratio: 3.257353e-03	ci left: 5.764523e-01	ci right 5.783340e-01	k: 612037	n:1060000
KS ci ratio: 1.011085e-01	ci left: 1.344427e-03	ci right 1.488509e-03	k: 1500	n:1060000
TRIM65   1060000 perm   628 sec   (1689 perm/sec)   p_kst 1.415094e-03   p_cons 5.773934e-01   p_joint 9.411321e-03

Joint ci ratio: 3.849329e-02	ci left: 9.414254e-03	ci right 9.784669e-03	k: 10270	n:1070000
Cons ci ratio: 3.241674e-03	ci left: 5.765204e-01	ci right 5.783932e-01	k: 617879	n:1070000
KS ci ratio: 1.006070e-01	ci left: 1.345527e-03	ci right 1.488969e-03	k: 1515	n:1070000
TRIM65   1070000 perm   638 sec   (1678 perm/sec)   p_kst 1.415888e-03   p_cons 5.774570e-01   p_joint 9.598131e-03

Joint ci ratio: 3.832025e-02	ci left: 9.412369e-03	ci right 9.781009e-03	k: 10363	n:1080000
Cons ci ratio: 3.227082e-03	ci left: 5.764566e-01	ci right 5.783208e-01	k: 623580	n:1080000
KS ci ratio: 1.001129e-01	ci left: 1.346609e-03	ci right 1.489420e-03	k: 1530	n:1080000
TRIM65   1080000 perm   648 sec   (1668 perm/sec)   p_kst 1.416667e-03   p_cons 5.773889e-01   p_joint 9.595370e-03

Joint ci ratio: 3.811090e-02	ci left: 9.429607e-03	ci right 9.796859e-03	k: 10477	n:1090000
Cons ci ratio: 3.211888e-03	ci left: 5.765151e-01	ci right 5.783707e-01	k: 629413	n:1090000
KS ci ratio: 9.956158e-02	ci left: 1.349462e-03	ci right 1.491741e-03	k: 1547	n:1090000
TRIM65   1090000 perm   658 sec   (1658 perm/sec)   p_kst 1.419266e-03   p_cons 5.774431e-01   p_joint 9.611927e-03

Outputting figure to mutsig2_images.part000000000182/TRIM65.2_1578_1090000_0.0014193_0.57744_0.0096119.png
                gene_name: TRIM65
               theta_stop: 0.100 
                    nperm: 1090000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.0096 
     ci_joint_bounds_left: 0.0094 
    ci_joint_bounds_right: 0.0098 

Current progress: 88 percent done.
TRIM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
Cons ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
KS ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
TRIM7   10000 perm   2 sec   (6475 perm/sec)   p_kst 3.247000e-01   p_cons 1.250000e-02   p_joint 2.180000e-02

Joint ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
Cons ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
KS ci ratio: 4.029523e-02	ci left: 3.146803e-01	ci right 3.276717e-01	k: 6423	n:20000
TRIM7   20000 perm   3 sec   (5781 perm/sec)   p_kst 3.211500e-01   p_cons 1.030000e-02   p_joint 1.030000e-02

Joint ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
Cons ci ratio: 2.315018e-01	ci left: 8.370517e-03	ci right 1.059270e-02	k: 283	n:30000
KS ci ratio: 3.285070e-02	ci left: 3.165476e-01	ci right 3.271536e-01	k: 9655	n:30000
TRIM7   30000 perm   5 sec   (5498 perm/sec)   p_kst 3.218333e-01   p_cons 9.433333e-03   p_joint 9.733333e-03

Joint ci ratio: 2.285590e-01	ci left: 6.465611e-03	ci right 8.157099e-03	k: 291	n:40000
Cons ci ratio: 1.982961e-01	ci left: 8.715205e-03	ci right 1.065697e-02	k: 386	n:40000
KS ci ratio: 2.847999e-02	ci left: 3.167990e-01	ci right 3.259769e-01	k: 12855	n:40000
TRIM7   40000 perm   8 sec   (5317 perm/sec)   p_kst 3.213750e-01   p_cons 9.650000e-03   p_joint 7.275000e-03

Joint ci ratio: 9.048170e-02	ci left: 3.454061e-02	ci right 3.783352e-02	k: 1808	n:50000
Cons ci ratio: 1.604273e-01	ci left: 1.085271e-02	ci right 1.276460e-02	k: 589	n:50000
KS ci ratio: 2.542081e-02	ci left: 3.181840e-01	ci right 3.263967e-01	k: 16114	n:50000
TRIM7   50000 perm   10 sec   (5167 perm/sec)   p_kst 3.222800e-01   p_cons 1.178000e-02   p_joint 3.616000e-02

Joint ci ratio: 1.569985e-01	ci left: 9.475512e-03	ci right 1.110571e-02	k: 616	n:60000
Cons ci ratio: 1.636978e-01	ci left: 8.691314e-03	ci right 1.025668e-02	k: 567	n:60000
KS ci ratio: 2.319177e-02	ci left: 3.188100e-01	ci right 3.263072e-01	k: 19353	n:60000
TRIM7   60000 perm   12 sec   (5045 perm/sec)   p_kst 3.225500e-01   p_cons 9.450000e-03   p_joint 1.026667e-02

Joint ci ratio: 1.641012e-01	ci left: 7.421892e-03	ci right 8.762223e-03	k: 565	n:70000
Cons ci ratio: 1.524477e-01	ci left: 8.643420e-03	ci right 1.008340e-02	k: 654	n:70000
KS ci ratio: 2.142773e-02	ci left: 3.199777e-01	ci right 3.269226e-01	k: 22641	n:70000
TRIM7   70000 perm   14 sec   (4928 perm/sec)   p_kst 3.234429e-01   p_cons 9.342857e-03   p_joint 8.071429e-03

Joint ci ratio: 1.780113e-01	ci left: 5.488528e-03	ci right 6.572765e-03	k: 481	n:80000
Cons ci ratio: 1.432379e-01	ci left: 8.610279e-03	ci right 9.950670e-03	k: 741	n:80000
KS ci ratio: 2.004127e-02	ci left: 3.202585e-01	ci right 3.267543e-01	k: 25880	n:80000
TRIM7   80000 perm   17 sec   (4821 perm/sec)   p_kst 3.235000e-01   p_cons 9.262500e-03   p_joint 6.012500e-03

Joint ci ratio: 1.600360e-01	ci left: 6.092059e-03	ci right 7.162336e-03	k: 595	n:90000
Cons ci ratio: 1.350257e-01	ci left: 8.650978e-03	ci right 9.914288e-03	k: 834	n:90000
KS ci ratio: 1.892060e-02	ci left: 3.198564e-01	ci right 3.259772e-01	k: 29062	n:90000
TRIM7   90000 perm   19 sec   (4723 perm/sec)   p_kst 3.229111e-01   p_cons 9.266667e-03   p_joint 6.611111e-03

Joint ci ratio: 1.519648e-01	ci left: 6.107494e-03	ci right 7.121442e-03	k: 660	n:100000
Cons ci ratio: 1.289963e-01	ci left: 8.559441e-03	ci right 9.749291e-03	k: 914	n:100000
KS ci ratio: 1.799995e-02	ci left: 3.187950e-01	ci right 3.245954e-01	k: 32169	n:100000
TRIM7   100000 perm   22 sec   (4631 perm/sec)   p_kst 3.216900e-01   p_cons 9.140000e-03   p_joint 6.600000e-03

Joint ci ratio: 1.473717e-01	ci left: 5.919745e-03	ci right 6.870199e-03	k: 702	n:110000
Cons ci ratio: 1.233338e-01	ci left: 8.538453e-03	ci right 9.669475e-03	k: 1000	n:110000
KS ci ratio: 1.714085e-02	ci left: 3.194748e-01	ci right 3.250073e-01	k: 35446	n:110000
TRIM7   110000 perm   24 sec   (4555 perm/sec)   p_kst 3.222364e-01   p_cons 9.090909e-03   p_joint 6.381818e-03

Joint ci ratio: 1.360894e-01	ci left: 6.399163e-03	ci right 7.341572e-03	k: 823	n:120000
Cons ci ratio: 1.182472e-01	ci left: 8.538095e-03	ci right 9.619163e-03	k: 1088	n:120000
KS ci ratio: 1.641314e-02	ci left: 3.195395e-01	ci right 3.248358e-01	k: 38662	n:120000
TRIM7   120000 perm   27 sec   (4476 perm/sec)   p_kst 3.221833e-01   p_cons 9.066667e-03   p_joint 6.858333e-03

Joint ci ratio: 1.326850e-01	ci left: 6.226532e-03	ci right 7.118765e-03	k: 866	n:130000
Cons ci ratio: 1.138397e-01	ci left: 8.523654e-03	ci right 9.559962e-03	k: 1174	n:130000
KS ci ratio: 1.575922e-02	ci left: 3.199208e-01	ci right 3.250102e-01	k: 41920	n:130000
TRIM7   130000 perm   30 sec   (4394 perm/sec)   p_kst 3.224615e-01   p_cons 9.030769e-03   p_joint 6.661538e-03

Joint ci ratio: 1.335721e-01	ci left: 5.705722e-03	ci right 6.529221e-03	k: 855	n:140000
Cons ci ratio: 1.092373e-01	ci left: 8.616150e-03	ci right 9.618626e-03	k: 1275	n:140000
KS ci ratio: 1.517348e-02	ci left: 3.203724e-01	ci right 3.252778e-01	k: 45195	n:140000
TRIM7   140000 perm   32 sec   (4315 perm/sec)   p_kst 3.228214e-01   p_cons 9.107143e-03   p_joint 6.107143e-03

Joint ci ratio: 1.243000e-01	ci left: 6.177078e-03	ci right 7.002168e-03	k: 987	n:150000
Cons ci ratio: 1.062868e-01	ci left: 8.508777e-03	ci right 9.470347e-03	k: 1347	n:150000
KS ci ratio: 1.468165e-02	ci left: 3.197820e-01	ci right 3.245182e-01	k: 48322	n:150000
TRIM7   150000 perm   35 sec   (4240 perm/sec)   p_kst 3.221467e-01   p_cons 8.980000e-03   p_joint 6.580000e-03

Joint ci ratio: 1.202879e-01	ci left: 6.196955e-03	ci right 6.996082e-03	k: 1054	n:160000
Cons ci ratio: 1.027629e-01	ci left: 8.549130e-03	ci right 9.481292e-03	k: 1441	n:160000
KS ci ratio: 1.420864e-02	ci left: 3.200662e-01	ci right 3.246527e-01	k: 51577	n:160000
TRIM7   160000 perm   38 sec   (4170 perm/sec)   p_kst 3.223563e-01   p_cons 9.006250e-03   p_joint 6.587500e-03

Joint ci ratio: 1.172206e-01	ci left: 6.152047e-03	ci right 6.923750e-03	k: 1110	n:170000
Cons ci ratio: 9.979739e-02	ci left: 8.545041e-03	ci right 9.448294e-03	k: 1528	n:170000
KS ci ratio: 1.379213e-02	ci left: 3.198906e-01	ci right 3.243390e-01	k: 54759	n:170000
TRIM7   170000 perm   41 sec   (4100 perm/sec)   p_kst 3.221118e-01   p_cons 8.988235e-03   p_joint 6.529412e-03

Joint ci ratio: 1.145248e-01	ci left: 6.096167e-03	ci right 6.842085e-03	k: 1163	n:180000
Cons ci ratio: 9.692348e-02	ci left: 8.568859e-03	ci right 9.447063e-03	k: 1620	n:180000
KS ci ratio: 1.340801e-02	ci left: 3.198083e-01	ci right 3.241308e-01	k: 57954	n:180000
TRIM7   180000 perm   45 sec   (4033 perm/sec)   p_kst 3.219667e-01   p_cons 9.000000e-03   p_joint 6.461111e-03

Joint ci ratio: 1.111370e-01	ci left: 6.143578e-03	ci right 6.871602e-03	k: 1235	n:190000
Cons ci ratio: 9.414580e-02	ci left: 8.616206e-03	ci right 9.472559e-03	k: 1717	n:190000
KS ci ratio: 1.305098e-02	ci left: 3.198466e-01	ci right 3.240536e-01	k: 61170	n:190000
TRIM7   190000 perm   48 sec   (3974 perm/sec)   p_kst 3.219474e-01   p_cons 9.036842e-03   p_joint 6.500000e-03

Joint ci ratio: 1.079499e-01	ci left: 6.196271e-03	ci right 6.908145e-03	k: 1309	n:200000
Cons ci ratio: 9.134042e-02	ci left: 8.708006e-03	ci right 9.546315e-03	k: 1824	n:200000
KS ci ratio: 1.273051e-02	ci left: 3.195580e-01	ci right 3.236572e-01	k: 64321	n:200000
TRIM7   200000 perm   51 sec   (3916 perm/sec)   p_kst 3.216050e-01   p_cons 9.120000e-03   p_joint 6.545000e-03

Joint ci ratio: 1.051753e-01	ci left: 6.225664e-03	ci right 6.921394e-03	k: 1379	n:210000
Cons ci ratio: 8.926262e-02	ci left: 8.693611e-03	ci right 9.510502e-03	k: 1910	n:210000
KS ci ratio: 1.242169e-02	ci left: 3.196784e-01	ci right 3.236789e-01	k: 67552	n:210000
TRIM7   210000 perm   54 sec   (3859 perm/sec)   p_kst 3.216762e-01   p_cons 9.095238e-03   p_joint 6.566667e-03

Joint ci ratio: 1.020390e-01	ci left: 6.323476e-03	ci right 7.007801e-03	k: 1465	n:220000
Cons ci ratio: 8.738671e-02	ci left: 8.667381e-03	ci right 9.463816e-03	k: 1993	n:220000
KS ci ratio: 1.213493e-02	ci left: 3.197663e-01	ci right 3.236748e-01	k: 70778	n:220000
TRIM7   220000 perm   58 sec   (3804 perm/sec)   p_kst 3.217182e-01   p_cons 9.059091e-03   p_joint 6.659091e-03

Joint ci ratio: 1.008493e-01	ci left: 6.196835e-03	ci right 6.859172e-03	k: 1500	n:230000
Cons ci ratio: 8.535516e-02	ci left: 8.698920e-03	ci right 9.478744e-03	k: 2089	n:230000
KS ci ratio: 1.187710e-02	ci left: 3.194828e-01	ci right 3.233043e-01	k: 73920	n:230000
TRIM7   230000 perm   61 sec   (3751 perm/sec)   p_kst 3.213913e-01   p_cons 9.082609e-03   p_joint 6.521739e-03

Joint ci ratio: 9.445706e-02	ci left: 6.788313e-03	ci right 7.465339e-03	k: 1709	n:240000
Cons ci ratio: 8.347827e-02	ci left: 8.723946e-03	ci right 9.487980e-03	k: 2184	n:240000
KS ci ratio: 1.162547e-02	ci left: 3.195816e-01	ci right 3.233227e-01	k: 77148	n:240000
TRIM7   240000 perm   65 sec   (3699 perm/sec)   p_kst 3.214500e-01   p_cons 9.100000e-03   p_joint 7.120833e-03

Outputting figure to mutsig2_images.part000000000182/TRIM7.2_1684_240000_0.32145_0.0091_0.0071208.png
                gene_name: TRIM7
               theta_stop: 0.094 
                    nperm: 240000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0091 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0075 

Current progress: 89 percent done.
TRIM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
KS ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
TRIM8   10000 perm   2 sec   (6277 perm/sec)   p_kst 2.936000e-01   p_cons 2.020000e-02   p_joint 1.050000e-02

Joint ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
Cons ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
KS ci ratio: 4.277820e-02	ci left: 2.893307e-01	ci right 3.020287e-01	k: 5913	n:20000
TRIM8   20000 perm   4 sec   (5594 perm/sec)   p_kst 2.956500e-01   p_cons 1.880000e-02   p_joint 7.400000e-03

Joint ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
Cons ci ratio: 1.627664e-01	ci left: 1.742115e-02	ci right 2.053966e-02	k: 568	n:30000
KS ci ratio: 3.493669e-02	ci left: 2.904066e-01	ci right 3.007663e-01	k: 8867	n:30000
TRIM8   30000 perm   6 sec   (5317 perm/sec)   p_kst 2.955667e-01   p_cons 1.893333e-02   p_joint 7.766667e-03

Joint ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
Cons ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
KS ci ratio: 3.045341e-02	ci left: 2.884179e-01	ci right 2.973621e-01	k: 11715	n:40000
TRIM8   40000 perm   8 sec   (5149 perm/sec)   p_kst 2.928750e-01   p_cons 1.877500e-02   p_joint 1.030000e-02

Joint ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
Cons ci ratio: 1.247668e-01	ci left: 1.815085e-02	ci right 2.058541e-02	k: 967	n:50000
KS ci ratio: 2.719503e-02	ci left: 2.895505e-01	ci right 2.975534e-01	k: 14677	n:50000
TRIM8   50000 perm   10 sec   (5030 perm/sec)   p_kst 2.935400e-01   p_cons 1.934000e-02   p_joint 9.380000e-03

Joint ci ratio: 1.783915e-01	ci left: 7.270879e-03	ci right 8.710656e-03	k: 478	n:60000
Cons ci ratio: 1.135775e-01	ci left: 1.835994e-02	ci right 2.058688e-02	k: 1167	n:60000
KS ci ratio: 2.472874e-02	ci left: 2.915187e-01	ci right 2.988345e-01	k: 17710	n:60000
TRIM8   60000 perm   12 sec   (4921 perm/sec)   p_kst 2.951667e-01   p_cons 1.945000e-02   p_joint 7.966667e-03

Joint ci ratio: 1.655823e-01	ci left: 7.284886e-03	ci right 8.613531e-03	k: 555	n:70000
Cons ci ratio: 1.054554e-01	ci left: 1.833540e-02	ci right 2.039043e-02	k: 1354	n:70000
KS ci ratio: 2.286441e-02	ci left: 2.923349e-01	ci right 2.991106e-01	k: 20700	n:70000
TRIM8   70000 perm   15 sec   (4819 perm/sec)   p_kst 2.957143e-01   p_cons 1.934286e-02   p_joint 7.928571e-03

Joint ci ratio: 1.455320e-01	ci left: 8.333079e-03	ci right 9.652898e-03	k: 718	n:80000
Cons ci ratio: 9.776533e-02	ci left: 1.873602e-02	ci right 2.067403e-02	k: 1575	n:80000
KS ci ratio: 2.138467e-02	ci left: 2.926136e-01	ci right 2.989512e-01	k: 23662	n:80000
TRIM8   80000 perm   17 sec   (4717 perm/sec)   p_kst 2.957750e-01   p_cons 1.968750e-02   p_joint 8.975000e-03

Joint ci ratio: 1.362665e-01	ci left: 8.489920e-03	ci right 9.742026e-03	k: 819	n:90000
Cons ci ratio: 9.172651e-02	ci left: 1.897581e-02	ci right 2.081087e-02	k: 1789	n:90000
KS ci ratio: 2.022848e-02	ci left: 2.914234e-01	ci right 2.973898e-01	k: 26496	n:90000
TRIM8   90000 perm   19 sec   (4626 perm/sec)   p_kst 2.944000e-01   p_cons 1.987778e-02   p_joint 9.100000e-03

Joint ci ratio: 1.296413e-01	ci left: 8.472328e-03	ci right 9.656411e-03	k: 905	n:100000
Cons ci ratio: 8.666201e-02	ci left: 1.918038e-02	ci right 2.092762e-02	k: 2004	n:100000
KS ci ratio: 1.922471e-02	ci left: 2.908382e-01	ci right 2.964937e-01	k: 29366	n:100000
TRIM8   100000 perm   22 sec   (4535 perm/sec)   p_kst 2.936600e-01   p_cons 2.004000e-02   p_joint 9.050000e-03

Joint ci ratio: 1.240233e-01	ci left: 8.441521e-03	ci right 9.566413e-03	k: 989	n:110000
Cons ci ratio: 8.310127e-02	ci left: 1.900268e-02	ci right 2.065914e-02	k: 2180	n:110000
KS ci ratio: 1.835083e-02	ci left: 2.905017e-01	ci right 2.958910e-01	k: 32251	n:110000
TRIM8   110000 perm   25 sec   (4450 perm/sec)   p_kst 2.931909e-01   p_cons 1.981818e-02   p_joint 8.990909e-03

Joint ci ratio: 1.189101e-01	ci left: 8.441037e-03	ci right 9.516227e-03	k: 1076	n:120000
Cons ci ratio: 7.931336e-02	ci left: 1.915814e-02	ci right 2.074851e-02	k: 2393	n:120000
KS ci ratio: 1.759009e-02	ci left: 2.901348e-01	ci right 2.952919e-01	k: 35125	n:120000
TRIM8   120000 perm   27 sec   (4367 perm/sec)   p_kst 2.927083e-01   p_cons 1.994167e-02   p_joint 8.966667e-03

Joint ci ratio: 1.144309e-01	ci left: 8.433960e-03	ci right 9.465046e-03	k: 1162	n:130000
Cons ci ratio: 7.605982e-02	ci left: 1.926094e-02	ci right 2.079135e-02	k: 2602	n:130000
KS ci ratio: 1.692868e-02	ci left: 2.895369e-01	ci right 2.944878e-01	k: 37961	n:130000
TRIM8   130000 perm   30 sec   (4287 perm/sec)   p_kst 2.920077e-01   p_cons 2.001538e-02   p_joint 8.938462e-03

Joint ci ratio: 1.109163e-01	ci left: 8.352131e-03	ci right 9.339801e-03	k: 1237	n:140000
Cons ci ratio: 7.364548e-02	ci left: 1.910469e-02	ci right 2.057243e-02	k: 2776	n:140000
KS ci ratio: 1.632477e-02	ci left: 2.893269e-01	ci right 2.940960e-01	k: 40839	n:140000
TRIM8   140000 perm   33 sec   (4211 perm/sec)   p_kst 2.917071e-01   p_cons 1.982857e-02   p_joint 8.835714e-03

Joint ci ratio: 1.070101e-01	ci left: 8.391951e-03	ci right 9.347178e-03	k: 1329	n:150000
Cons ci ratio: 7.111609e-02	ci left: 1.914681e-02	ci right 2.056517e-02	k: 2977	n:150000
KS ci ratio: 1.576669e-02	ci left: 2.895268e-01	ci right 2.941346e-01	k: 43774	n:150000
TRIM8   150000 perm   36 sec   (4140 perm/sec)   p_kst 2.918267e-01   p_cons 1.984667e-02   p_joint 8.860000e-03

Joint ci ratio: 1.034528e-01	ci left: 8.433417e-03	ci right 9.359511e-03	k: 1422	n:160000
Cons ci ratio: 6.899687e-02	ci left: 1.909225e-02	ci right 2.046273e-02	k: 3163	n:160000
KS ci ratio: 1.526795e-02	ci left: 2.895483e-01	ci right 2.940093e-01	k: 46684	n:160000
TRIM8   160000 perm   39 sec   (4069 perm/sec)   p_kst 2.917750e-01   p_cons 1.976875e-02   p_joint 8.887500e-03

Joint ci ratio: 9.999556e-02	ci left: 8.510621e-03	ci right 9.412127e-03	k: 1522	n:170000
Cons ci ratio: 6.694443e-02	ci left: 1.910830e-02	ci right 2.043756e-02	k: 3360	n:170000
KS ci ratio: 1.480784e-02	ci left: 2.897336e-01	ci right 2.940617e-01	k: 49622	n:170000
TRIM8   170000 perm   42 sec   (4004 perm/sec)   p_kst 2.918941e-01   p_cons 1.976471e-02   p_joint 8.952941e-03

Outputting figure to mutsig2_images.part000000000182/TRIM8.2_1680_170000_0.29189_0.019765_0.0089529.png
                gene_name: TRIM8
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0085 
    ci_joint_bounds_right: 0.0094 

Current progress: 91 percent done.
TRMT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
Cons ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
TRMT11   10000 perm   2 sec   (6320 perm/sec)   p_kst 8.155000e-01   p_cons 7.065000e-01   p_joint 9.803000e-01

Outputting figure to mutsig2_images.part000000000182/TRMT11.2_1444_10000_0.8155_0.7065_0.9803.png
                gene_name: TRMT11
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 92 percent done.
TRMT2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
Cons ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
KS ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
TRMT2A   10000 perm   2 sec   (6221 perm/sec)   p_kst 8.315000e-01   p_cons 4.619000e-01   p_joint 7.083000e-01

Outputting figure to mutsig2_images.part000000000182/TRMT2A.2_1926_10000_0.8315_0.4619_0.7083.png
                gene_name: TRMT2A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 94 percent done.
TRMT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
Cons ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
TRMT6   10000 perm   2 sec   (6439 perm/sec)   p_kst 4.710000e-02   p_cons 7.351000e-01   p_joint 3.294000e-01

Joint ci ratio: 6.645210e-02	ci left: 1.432530e-01	ci right 1.531495e-01	k: 2963	n:20000
Cons ci ratio: 1.706249e-02	ci left: 7.189557e-01	ci right 7.313788e-01	k: 14504	n:20000
KS ci ratio: 1.253030e-01	ci left: 4.371988e-02	ci right 4.961282e-02	k: 932	n:20000
TRMT6   20000 perm   3 sec   (5759 perm/sec)   p_kst 4.660000e-02   p_cons 7.252000e-01   p_joint 1.481500e-01

Joint ci ratio: 5.067338e-02	ci left: 1.620693e-01	ci right 1.705287e-01	k: 4988	n:30000
Cons ci ratio: 1.396884e-02	ci left: 7.190375e-01	ci right 7.291857e-01	k: 21724	n:30000
KS ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
TRMT6   30000 perm   5 sec   (5458 perm/sec)   p_kst 4.733333e-02   p_cons 7.241333e-01   p_joint 1.662667e-01

Joint ci ratio: 5.798146e-02	ci left: 9.956877e-02	ci right 1.055391e-01	k: 4101	n:40000
Cons ci ratio: 1.211583e-02	ci left: 7.191134e-01	ci right 7.279042e-01	k: 28941	n:40000
KS ci ratio: 8.803601e-02	ci left: 4.514222e-02	ci right 4.932383e-02	k: 1888	n:40000
TRMT6   40000 perm   8 sec   (5246 perm/sec)   p_kst 4.720000e-02   p_cons 7.235250e-01   p_joint 1.025250e-01

Outputting figure to mutsig2_images.part000000000182/TRMT6.2_1538_40000_0.0472_0.72352_0.10253.png
                gene_name: TRMT6
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 95 percent done.
TRNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
Cons ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
KS ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
TRNT1   10000 perm   2 sec   (6437 perm/sec)   p_kst 7.542000e-01   p_cons 5.229000e-01   p_joint 9.243000e-01

Outputting figure to mutsig2_images.part000000000182/TRNT1.2_1333_10000_0.7542_0.5229_0.9243.png
                gene_name: TRNT1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 97 percent done.
TRPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
TRPT1   10000 perm   1 sec   (6770 perm/sec)   p_kst 7.638000e-01   p_cons 2.171000e-01   p_joint 2.306000e-01

Outputting figure to mutsig2_images.part000000000182/TRPT1.2_799_10000_0.7638_0.2171_0.2306.png
                gene_name: TRPT1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
TRPV4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
Cons ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
KS ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
TRPV4   10000 perm   2 sec   (5830 perm/sec)   p_kst 5.048000e-01   p_cons 2.195000e-01   p_joint 5.136000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV4.2_2676_10000_0.5048_0.2195_0.5136.png
                gene_name: TRPV4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000182
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 182 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 4422652: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000183> was used as the working directory.
Started at Wed Oct 24 18:10:06 2012
Results reported at Wed Oct 24 18:25:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000183.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000183.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 183  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000183.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    997.31 sec.
    Max Memory :      5379 MB
    Max Swap   :      7701 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
183
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 183
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 183: processing genes 16467 - 16556
Calculating significance of each gene.
Using projection method.
16467	TSHR	8.334955e-01
16468	TSHZ1	9.956513e-01
16469	TSHZ2	1
16470	TSHZ3	9.985962e-01
16471	TSKS	6.960740e-01
16472	TSKU	7.744591e-01
16473	TSLP	3.971898e-02
16474	TSN	6.907213e-01
16475	TSNARE1	9.224639e-01
16476	TSNAX	1
16477	TSNAXIP1	9.760395e-01
16478	TSPAN1	7.029904e-01
In gene TSPAN10 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 721     n = 1	mu =   9.71e-07
16479	TSPAN10	1.437599e-01
16480	TSPAN11	1
16481	TSPAN12	2.650589e-01
16482	TSPAN13	1
16483	TSPAN14	1
16484	TSPAN15	1
16485	TSPAN16	3.864053e-01
16486	TSPAN17	1
16487	TSPAN18	8.622487e-01
16488	TSPAN19	5.875250e-02
16489	TSPAN2	3.564629e-01
16490	TSPAN3	4.998464e-01
16491	TSPAN31	2.587229e-01
16492	TSPAN32	1
16493	TSPAN33	4.396334e-01
16494	TSPAN4	1
16495	TSPAN5	8.349625e-01
16496	TSPAN6	5.416719e-01
16497	TSPAN7	1.073102e-01
16498	TSPAN8	1.841629e-01
16499	TSPAN9	1
16500	TSPO	1
16501	TSPO2	3.001754e-01
16502	TSPY1	2.866697e-01
16503	TSPY2	5.369608e-01
16504	TSPYL1	9.394641e-01
16505	TSPYL2	4.282257e-01
16506	TSPYL4	1
16507	TSPYL5	4.439693e-01
16508	TSPYL6	9.152682e-01
16509	TSR1	8.690180e-01
16510	TSR2	1
16511	TSSC1	1
16512	TSSC4	7.739586e-01
16513	TSSK1B	1.931081e-02
16514	TSSK2	1
16515	TSSK3	3.472505e-01
16516	TSSK4	7.135770e-01
16517	TSSK6	9.321718e-01
16518	TST	1
16519	TSTA3	7.487099e-01
16520	TSTD2	8.903865e-01
16521	TTBK1	9.907681e-01
16522	TTBK2	1
16523	TTC1	7.917762e-01
16524	TTC12	1.032879e-01
16525	TTC13	4.533961e-01
16526	TTC14	6.032480e-01
16527	TTC15	1.736964e-01
16528	TTC16	3.214097e-01
16529	TTC17	5.163929e-01
16530	TTC18	2.317592e-01
16531	TTC19	1
16532	TTC21A	9.594067e-01
16533	TTC21B	9.628021e-01
16534	TTC22	3.956916e-01
16535	TTC23	1.586823e-01
16536	TTC23L	2.945939e-01
16537	TTC24	2.097871e-01
16538	TTC25	9.578300e-01
16539	TTC26	1
16540	TTC27	4.912433e-01
16541	TTC29	2.324133e-01
16542	TTC3	9.764125e-01
16543	TTC30A	8.780640e-01
16544	TTC30B	8.600152e-01
16545	TTC31	8.396160e-01
16546	TTC32	3.009167e-01
16547	TTC33	4.601144e-01
16548	TTC35	8.453554e-01
16549	TTC36	5.343231e-01
16550	TTC37	1
16551	TTC38	6.337209e-01
16552	TTC39A	1
16553	TTC39B	8.670420e-01
16554	TTC39C	8.097721e-01
16555	TTC4	1
16556	TTC5	8.258022e-01
Done

Running MutSig 2:
Scatter job 183: processing genes 16467 - 16556
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TSHZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
TSHZ3   10000 perm   3 sec   (3704 perm/sec)   p_kst 1.770000e-02   p_cons 5.519000e-01   p_joint 3.170000e-02

Joint ci ratio: 1.665517e-01	ci left: 2.470171e-02	ci right 2.923722e-02	k: 538	n:20000
Cons ci ratio: 2.512146e-02	ci left: 5.420721e-01	ci right 5.559136e-01	k: 10980	n:20000
KS ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
TSHZ3   20000 perm   8 sec   (2461 perm/sec)   p_kst 1.520000e-02   p_cons 5.490000e-01   p_joint 2.690000e-02

Joint ci ratio: 1.221922e-01	ci left: 3.113662e-02	ci right 3.522111e-02	k: 994	n:30000
Cons ci ratio: 2.044722e-02	ci left: 5.449164e-01	ci right 5.562071e-01	k: 16517	n:30000
KS ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
TSHZ3   30000 perm   12 sec   (2600 perm/sec)   p_kst 1.526667e-02   p_cons 5.505667e-01   p_joint 3.313333e-02

Joint ci ratio: 1.172137e-01	ci left: 2.560351e-02	ci right 2.881562e-02	k: 1087	n:40000
Cons ci ratio: 1.763805e-02	ci left: 5.476360e-01	ci right 5.574063e-01	k: 22101	n:40000
KS ci ratio: 1.586924e-01	ci left: 1.383162e-02	ci right 1.623954e-02	k: 600	n:40000
TSHZ3   40000 perm   15 sec   (2711 perm/sec)   p_kst 1.500000e-02   p_cons 5.525250e-01   p_joint 2.717500e-02

Joint ci ratio: 1.126134e-01	ci left: 2.232606e-02	ci right 2.500964e-02	k: 1182	n:50000
Cons ci ratio: 1.578515e-02	ci left: 5.478684e-01	ci right 5.566055e-01	k: 27612	n:50000
KS ci ratio: 1.402662e-01	ci left: 1.430026e-02	ci right 1.647653e-02	k: 768	n:50000
TSHZ3   50000 perm   18 sec   (2773 perm/sec)   p_kst 1.536000e-02   p_cons 5.522400e-01   p_joint 2.364000e-02

Joint ci ratio: 9.211190e-02	ci left: 2.794875e-02	ci right 3.066370e-02	k: 1757	n:60000
Cons ci ratio: 1.439113e-02	ci left: 5.488942e-01	ci right 5.568673e-01	k: 33173	n:60000
KS ci ratio: 1.289565e-01	ci left: 1.418779e-02	ci right 1.615951e-02	k: 909	n:60000
TSHZ3   60000 perm   21 sec   (2810 perm/sec)   p_kst 1.515000e-02   p_cons 5.528833e-01   p_joint 2.928333e-02

Joint ci ratio: 8.632539e-02	ci left: 2.737767e-02	ci right 2.986161e-02	k: 2002	n:70000
Cons ci ratio: 1.332550e-02	ci left: 5.491218e-01	ci right 5.565024e-01	k: 38697	n:70000
KS ci ratio: 1.183572e-01	ci left: 1.451466e-02	ci right 1.635440e-02	k: 1079	n:70000
TSHZ3   70000 perm   25 sec   (2822 perm/sec)   p_kst 1.541429e-02   p_cons 5.528143e-01   p_joint 2.860000e-02

Joint ci ratio: 8.546133e-02	ci left: 2.452878e-02	ci right 2.673080e-02	k: 2049	n:80000
Cons ci ratio: 1.246493e-02	ci left: 5.493590e-01	ci right 5.562622e-01	k: 44225	n:80000
KS ci ratio: 1.098702e-01	ci left: 1.480128e-02	ci right 1.653411e-02	k: 1252	n:80000
TSHZ3   80000 perm   28 sec   (2825 perm/sec)   p_kst 1.565000e-02   p_cons 5.528125e-01   p_joint 2.561250e-02

Joint ci ratio: 7.160983e-02	ci left: 3.106715e-02	ci right 3.338536e-02	k: 2899	n:90000
Cons ci ratio: 1.174867e-02	ci left: 5.497001e-01	ci right 5.562076e-01	k: 49766	n:90000
KS ci ratio: 1.033125e-01	ci left: 1.493041e-02	ci right 1.656769e-02	k: 1416	n:90000
TSHZ3   90000 perm   32 sec   (2820 perm/sec)   p_kst 1.573333e-02   p_cons 5.529556e-01   p_joint 3.221111e-02

Joint ci ratio: 7.062063e-02	ci left: 2.883341e-02	ci right 3.095397e-02	k: 2988	n:100000
Cons ci ratio: 1.114140e-02	ci left: 5.500621e-01	ci right 5.562348e-01	k: 55315	n:100000
KS ci ratio: 9.831088e-02	ci left: 1.488004e-02	ci right 1.642824e-02	k: 1564	n:100000
TSHZ3   100000 perm   36 sec   (2811 perm/sec)   p_kst 1.564000e-02   p_cons 5.531500e-01   p_joint 2.988000e-02

Outputting figure to mutsig2_images.part000000000183/TSHZ3.39_3254_100000_0.01564_0.55315_0.02988.png
                gene_name: TSHZ3
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 2 percent done.
TSHZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
Cons ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
TSHZ2   10000 perm   2 sec   (4715 perm/sec)   p_kst 1.900000e-02   p_cons 7.299000e-01   p_joint 5.190000e-02

Joint ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
Cons ci ratio: 1.605227e-02	ci left: 7.427788e-01	ci right 7.548488e-01	k: 14977	n:20000
KS ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
TSHZ2   20000 perm   5 sec   (4316 perm/sec)   p_kst 1.855000e-02   p_cons 7.488500e-01   p_joint 4.055000e-02

Joint ci ratio: 1.055762e-01	ci left: 4.160929e-02	ci right 4.627955e-02	k: 1317	n:30000
Cons ci ratio: 1.297949e-02	ci left: 7.475756e-01	ci right 7.573755e-01	k: 22575	n:30000
KS ci ratio: 1.651492e-01	ci left: 1.690934e-02	ci right 1.998493e-02	k: 552	n:30000
TSHZ2   30000 perm   7 sec   (4168 perm/sec)   p_kst 1.840000e-02   p_cons 7.525000e-01   p_joint 4.390000e-02

Joint ci ratio: 1.051948e-01	ci left: 3.178243e-02	ci right 3.533570e-02	k: 1341	n:40000
Cons ci ratio: 1.117948e-02	ci left: 7.502766e-01	ci right 7.587364e-01	k: 30181	n:40000
KS ci ratio: 1.428596e-01	ci left: 1.715376e-02	ci right 1.981679e-02	k: 738	n:40000
TSHZ2   40000 perm   10 sec   (4049 perm/sec)   p_kst 1.845000e-02   p_cons 7.545250e-01   p_joint 3.352500e-02

Joint ci ratio: 8.539404e-02	ci left: 3.871048e-02	ci right 4.218313e-02	k: 2021	n:50000
Cons ci ratio: 9.972378e-03	ci left: 7.517281e-01	ci right 7.592822e-01	k: 37776	n:50000
KS ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
TSHZ2   50000 perm   13 sec   (3939 perm/sec)   p_kst 1.844000e-02   p_cons 7.555200e-01   p_joint 4.042000e-02

Joint ci ratio: 7.261739e-02	ci left: 4.463225e-02	ci right 4.801180e-02	k: 2778	n:60000
Cons ci ratio: 8.900624e-03	ci left: 7.603301e-01	ci right 7.671444e-01	k: 45825	n:60000
KS ci ratio: 1.192182e-01	ci left: 1.664380e-02	ci right 1.876989e-02	k: 1061	n:60000
TSHZ2   60000 perm   16 sec   (3865 perm/sec)   p_kst 1.768333e-02   p_cons 7.637500e-01   p_joint 4.630000e-02

Joint ci ratio: 7.417096e-02	ci left: 3.694641e-02	ci right 3.980630e-02	k: 2685	n:70000
Cons ci ratio: 8.416275e-03	ci left: 7.528437e-01	ci right 7.592208e-01	k: 52923	n:70000
KS ci ratio: 1.104201e-01	ci left: 1.670829e-02	ci right 1.867484e-02	k: 1237	n:70000
TSHZ2   70000 perm   19 sec   (3767 perm/sec)   p_kst 1.767143e-02   p_cons 7.560429e-01   p_joint 3.835714e-02

Joint ci ratio: 7.123155e-02	ci left: 3.517423e-02	ci right 3.778453e-02	k: 2917	n:80000
Cons ci ratio: 7.852279e-03	ci left: 7.540124e-01	ci right 7.599689e-01	k: 60560	n:80000
KS ci ratio: 1.029505e-01	ci left: 1.688284e-02	ci right 1.872737e-02	k: 1423	n:80000
TSHZ2   80000 perm   21 sec   (3723 perm/sec)   p_kst 1.778750e-02   p_cons 7.570000e-01   p_joint 3.646250e-02

Joint ci ratio: 6.417100e-02	ci left: 3.853212e-02	ci right 4.109765e-02	k: 3582	n:90000
Cons ci ratio: 7.410131e-03	ci left: 7.538383e-01	ci right 7.594562e-01	k: 68099	n:90000
KS ci ratio: 9.697032e-02	ci left: 1.696786e-02	ci right 1.870786e-02	k: 1604	n:90000
TSHZ2   90000 perm   25 sec   (3609 perm/sec)   p_kst 1.782222e-02   p_cons 7.566556e-01   p_joint 3.980000e-02

Outputting figure to mutsig2_images.part000000000183/TSHZ2.19_3113_90000_0.017822_0.75666_0.0398.png
                gene_name: TSHZ2
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 4 percent done.
TSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
Cons ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
KS ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
TSHR   10000 perm   2 sec   (4968 perm/sec)   p_kst 6.263000e-01   p_cons 8.077000e-01   p_joint 8.327000e-01

Outputting figure to mutsig2_images.part000000000183/TSHR.10_2472_10000_0.6263_0.8077_0.8327.png
                gene_name: TSHR
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 6 percent done.
TTBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
KS ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
TTBK1   10000 perm   2 sec   (4687 perm/sec)   p_kst 3.025000e-01   p_cons 9.304000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000183/TTBK1.10_4022_10000_0.3025_0.9304_0.6024.png
                gene_name: TTBK1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 7 percent done.
TTC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
TTC17   10000 perm   2 sec   (4807 perm/sec)   p_kst 5.806000e-01   p_cons 8.310000e-02   p_joint 2.408000e-01

Joint ci ratio: 4.067717e-02	ci left: 3.106030e-01	ci right 3.235502e-01	k: 6341	n:20000
Cons ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
KS ci ratio: 2.332328e-02	ci left: 5.785854e-01	ci right 5.922897e-01	k: 11709	n:20000
TTC17   20000 perm   5 sec   (4374 perm/sec)   p_kst 5.854500e-01   p_cons 8.545000e-02   p_joint 3.170500e-01

Outputting figure to mutsig2_images.part000000000183/TTC17.10_3522_20000_0.58545_0.08545_0.31705.png
                gene_name: TTC17
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
TTC21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
Cons ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
KS ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
TTC21B   10000 perm   2 sec   (4313 perm/sec)   p_kst 1.685000e-01   p_cons 1.258000e-01   p_joint 1.301000e-01

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
KS ci ratio: 6.119201e-02	ci left: 1.650149e-01	ci right 1.754812e-01	k: 3404	n:20000
TTC21B   20000 perm   5 sec   (3954 perm/sec)   p_kst 1.702000e-01   p_cons 1.242500e-01   p_joint 9.105000e-02

Outputting figure to mutsig2_images.part000000000183/TTC21B.10_4067_20000_0.1702_0.12425_0.09105.png
                gene_name: TTC21B
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 11 percent done.
TTC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
Cons ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
TTC12   10000 perm   2 sec   (5203 perm/sec)   p_kst 9.123000e-01   p_cons 4.710000e-02   p_joint 2.495000e-01

Joint ci ratio: 5.901115e-02	ci left: 1.753892e-01	ci right 1.861038e-01	k: 3614	n:20000
Cons ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
KS ci ratio: 8.627876e-03	ci left: 9.076827e-01	ci right 9.155972e-01	k: 18234	n:20000
TTC12   20000 perm   4 sec   (4688 perm/sec)   p_kst 9.117000e-01   p_cons 4.610000e-02   p_joint 1.807000e-01

Joint ci ratio: 4.327082e-02	ci left: 2.101308e-01	ci right 2.194578e-01	k: 6443	n:30000
Cons ci ratio: 1.030657e-01	ci left: 4.362438e-02	ci right 4.839737e-02	k: 1379	n:30000
KS ci ratio: 7.108166e-03	ci left: 9.069422e-01	ci right 9.134448e-01	k: 27307	n:30000
TTC12   30000 perm   7 sec   (4494 perm/sec)   p_kst 9.102333e-01   p_cons 4.596667e-02   p_joint 2.147667e-01

Joint ci ratio: 3.725841e-02	ci left: 2.126955e-01	ci right 2.207956e-01	k: 8669	n:40000
Cons ci ratio: 8.930874e-02	ci left: 4.389420e-02	ci right 4.802204e-02	k: 1837	n:40000
KS ci ratio: 6.092700e-03	ci left: 9.090798e-01	ci right 9.146602e-01	k: 36476	n:40000
TTC12   40000 perm   9 sec   (4370 perm/sec)   p_kst 9.119000e-01   p_cons 4.592500e-02   p_joint 2.167250e-01

Outputting figure to mutsig2_images.part000000000183/TTC12.9_2202_40000_0.9119_0.045925_0.21673.png
                gene_name: TTC12
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 13 percent done.
TTC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
Cons ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
TTC14   10000 perm   2 sec   (5221 perm/sec)   p_kst 1.536000e-01   p_cons 2.967000e-01   p_joint 3.171000e-01

Outputting figure to mutsig2_images.part000000000183/TTC14.8_2391_10000_0.1536_0.2967_0.3171.png
                gene_name: TTC14
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 15 percent done.
TTC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
TTC18   10000 perm   2 sec   (4589 perm/sec)   p_kst 9.600000e-02   p_cons 7.683000e-01   p_joint 2.413000e-01

Joint ci ratio: 6.170594e-02	ci left: 1.626940e-01	ci right 1.731028e-01	k: 3357	n:20000
Cons ci ratio: 1.540350e-02	ci left: 7.581024e-01	ci right 7.699207e-01	k: 15281	n:20000
KS ci ratio: 8.503271e-02	ci left: 9.195118e-02	ci right 1.001667e-01	k: 1920	n:20000
TTC18   20000 perm   5 sec   (4175 perm/sec)   p_kst 9.600000e-02   p_cons 7.640500e-01   p_joint 1.678500e-01

Outputting figure to mutsig2_images.part000000000183/TTC18.8_3474_20000_0.096_0.76405_0.16785.png
                gene_name: TTC18
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 17 percent done.
TTC21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.517048e-02	ci left: 4.197698e-01	ci right 4.392713e-01	k: 4295	n:10000
Cons ci ratio: 3.415440e-02	ci left: 5.586236e-01	ci right 5.781366e-01	k: 5684	n:10000
KS ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
TTC21A   10000 perm   2 sec   (4498 perm/sec)   p_kst 2.269000e-01   p_cons 5.684000e-01   p_joint 4.295000e-01

Outputting figure to mutsig2_images.part000000000183/TTC21A.8_4082_10000_0.2269_0.5684_0.4295.png
                gene_name: TTC21A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 19 percent done.
TSHZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
TSHZ1   10000 perm   2 sec   (4786 perm/sec)   p_kst 1.834000e-01   p_cons 4.600000e-03   p_joint 1.310000e-02

Joint ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
Cons ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
KS ci ratio: 5.813935e-02	ci left: 1.797879e-01	ci right 1.906037e-01	k: 3703	n:20000
TSHZ1   20000 perm   5 sec   (4358 perm/sec)   p_kst 1.851500e-01   p_cons 5.450000e-03   p_joint 8.250000e-03

Joint ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
Cons ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
KS ci ratio: 4.787308e-02	ci left: 1.782755e-01	ci right 1.870527e-01	k: 5479	n:30000
TSHZ1   30000 perm   7 sec   (4193 perm/sec)   p_kst 1.826333e-01   p_cons 5.333333e-03   p_joint 1.106667e-02

Joint ci ratio: 2.119985e-01	ci left: 7.576304e-03	ci right 9.396133e-03	k: 338	n:40000
Cons ci ratio: 2.653809e-01	ci left: 4.705407e-03	ci right 6.167803e-03	k: 216	n:40000
KS ci ratio: 4.167120e-02	ci left: 1.773616e-01	ci right 1.849347e-01	k: 7245	n:40000
TSHZ1   40000 perm   10 sec   (4083 perm/sec)   p_kst 1.811250e-01   p_cons 5.400000e-03   p_joint 8.450000e-03

Joint ci ratio: 2.103143e-01	ci left: 6.174213e-03	ci right 7.643912e-03	k: 344	n:50000
Cons ci ratio: 2.503367e-01	ci left: 4.269324e-03	ci right 5.509234e-03	k: 243	n:50000
KS ci ratio: 3.732098e-02	ci left: 1.773757e-01	ci right 1.841414e-01	k: 9037	n:50000
TSHZ1   50000 perm   13 sec   (3988 perm/sec)   p_kst 1.807400e-01   p_cons 4.860000e-03   p_joint 6.880000e-03

Joint ci ratio: 1.901488e-01	ci left: 6.364370e-03	ci right 7.717305e-03	k: 421	n:60000
Cons ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
KS ci ratio: 3.391023e-02	ci left: 1.790522e-01	ci right 1.852452e-01	k: 10928	n:60000
TSHZ1   60000 perm   15 sec   (3909 perm/sec)   p_kst 1.821333e-01   p_cons 4.733333e-03   p_joint 7.016667e-03

Joint ci ratio: 1.600188e-01	ci left: 7.819502e-03	ci right 9.193135e-03	k: 594	n:70000
Cons ci ratio: 2.130199e-01	ci left: 4.301468e-03	ci right 5.340234e-03	k: 336	n:70000
KS ci ratio: 3.138952e-02	ci left: 1.793323e-01	ci right 1.850655e-01	k: 12753	n:70000
TSHZ1   70000 perm   18 sec   (3838 perm/sec)   p_kst 1.821857e-01   p_cons 4.800000e-03   p_joint 8.485714e-03

Joint ci ratio: 1.544513e-01	ci left: 7.370292e-03	ci right 8.615786e-03	k: 638	n:80000
Cons ci ratio: 1.980113e-01	ci left: 4.392248e-03	ci right 5.369190e-03	k: 389	n:80000
KS ci ratio: 2.927018e-02	ci left: 1.804502e-01	ci right 1.858228e-01	k: 14650	n:80000
TSHZ1   80000 perm   21 sec   (3766 perm/sec)   p_kst 1.831250e-01   p_cons 4.862500e-03   p_joint 7.975000e-03

Joint ci ratio: 1.468458e-01	ci left: 7.278431e-03	ci right 8.442515e-03	k: 706	n:90000
Cons ci ratio: 1.849476e-01	ci left: 4.507247e-03	ci right 5.436212e-03	k: 446	n:90000
KS ci ratio: 2.754035e-02	ci left: 1.812079e-01	ci right 1.862792e-01	k: 16536	n:90000
TSHZ1   90000 perm   24 sec   (3704 perm/sec)   p_kst 1.837333e-01   p_cons 4.955556e-03   p_joint 7.844444e-03

Joint ci ratio: 1.262404e-01	ci left: 8.946781e-03	ci right 1.016192e-02	k: 954	n:100000
Cons ci ratio: 1.761113e-01	ci left: 4.495741e-03	ci right 5.373352e-03	k: 492	n:100000
KS ci ratio: 2.635263e-02	ci left: 1.787871e-01	ci right 1.835714e-01	k: 18117	n:100000
TSHZ1   100000 perm   27 sec   (3643 perm/sec)   p_kst 1.811700e-01   p_cons 4.920000e-03   p_joint 9.540000e-03

Joint ci ratio: 1.275137e-01	ci left: 7.974737e-03	ci right 9.069594e-03	k: 936	n:110000
Cons ci ratio: 1.673429e-01	ci left: 4.548166e-03	ci right 5.387352e-03	k: 545	n:110000
KS ci ratio: 2.517625e-02	ci left: 1.783125e-01	ci right 1.828680e-01	k: 19864	n:110000
TSHZ1   110000 perm   31 sec   (3591 perm/sec)   p_kst 1.805818e-01   p_cons 4.954545e-03   p_joint 8.509091e-03

Joint ci ratio: 1.241335e-01	ci left: 7.729809e-03	ci right 8.760835e-03	k: 988	n:120000
Cons ci ratio: 1.599001e-01	ci left: 4.584755e-03	ci right 5.389454e-03	k: 597	n:120000
KS ci ratio: 2.408470e-02	ci left: 1.786510e-01	ci right 1.830145e-01	k: 21699	n:120000
TSHZ1   120000 perm   34 sec   (3541 perm/sec)   p_kst 1.808250e-01   p_cons 4.975000e-03   p_joint 8.233333e-03

Joint ci ratio: 1.201957e-01	ci left: 7.627362e-03	ci right 8.610153e-03	k: 1054	n:130000
Cons ci ratio: 1.533696e-01	ci left: 4.616413e-03	ci right 5.390536e-03	k: 649	n:130000
KS ci ratio: 2.306939e-02	ci left: 1.796378e-01	ci right 1.838379e-01	k: 23625	n:130000
TSHZ1   130000 perm   37 sec   (3491 perm/sec)   p_kst 1.817308e-01   p_cons 4.992308e-03   p_joint 8.107692e-03

Joint ci ratio: 1.136819e-01	ci left: 7.942444e-03	ci right 8.906654e-03	k: 1178	n:140000
Cons ci ratio: 1.480033e-01	ci left: 4.616601e-03	ci right 5.361271e-03	k: 697	n:140000
KS ci ratio: 2.222242e-02	ci left: 1.798183e-01	ci right 1.838663e-01	k: 25457	n:140000
TSHZ1   140000 perm   41 sec   (3446 perm/sec)   p_kst 1.818357e-01   p_cons 4.978571e-03   p_joint 8.414286e-03

Joint ci ratio: 1.124708e-01	ci left: 7.581298e-03	ci right 8.491206e-03	k: 1204	n:150000
Cons ci ratio: 1.426838e-01	ci left: 4.649319e-03	ci right 5.370018e-03	k: 750	n:150000
KS ci ratio: 2.151588e-02	ci left: 1.792403e-01	ci right 1.831454e-01	k: 27178	n:150000
TSHZ1   150000 perm   44 sec   (3381 perm/sec)   p_kst 1.811867e-01   p_cons 5.000000e-03   p_joint 8.026667e-03

Joint ci ratio: 1.093001e-01	ci left: 7.538901e-03	ci right 8.416569e-03	k: 1275	n:160000
Cons ci ratio: 1.372151e-01	ci left: 4.726654e-03	ci right 5.428965e-03	k: 811	n:160000
KS ci ratio: 2.084757e-02	ci left: 1.790912e-01	ci right 1.828704e-01	k: 28956	n:160000
TSHZ1   160000 perm   48 sec   (3339 perm/sec)   p_kst 1.809750e-01   p_cons 5.068750e-03   p_joint 7.968750e-03

Joint ci ratio: 1.057912e-01	ci left: 7.587722e-03	ci right 8.440949e-03	k: 1361	n:170000
Cons ci ratio: 1.326362e-01	ci left: 4.772600e-03	ci right 5.456209e-03	k: 868	n:170000
KS ci ratio: 2.022504e-02	ci left: 1.791488e-01	ci right 1.828150e-01	k: 30766	n:170000
TSHZ1   170000 perm   52 sec   (3294 perm/sec)   p_kst 1.809765e-01   p_cons 5.105882e-03   p_joint 8.005882e-03

Joint ci ratio: 1.038359e-01	ci left: 7.447469e-03	ci right 8.268500e-03	k: 1413	n:180000
Cons ci ratio: 1.297609e-01	ci left: 4.717002e-03	ci right 5.376871e-03	k: 907	n:180000
KS ci ratio: 1.966030e-02	ci left: 1.791241e-01	ci right 1.826862e-01	k: 32562	n:180000
TSHZ1   180000 perm   55 sec   (3250 perm/sec)   p_kst 1.809000e-01   p_cons 5.038889e-03   p_joint 7.850000e-03

Joint ci ratio: 1.025148e-01	ci left: 7.245169e-03	ci right 8.033122e-03	k: 1450	n:190000
Cons ci ratio: 1.264622e-01	ci left: 4.713274e-03	ci right 5.354602e-03	k: 955	n:190000
KS ci ratio: 1.912814e-02	ci left: 1.792920e-01	ci right 1.827598e-01	k: 34394	n:190000
TSHZ1   190000 perm   59 sec   (3205 perm/sec)   p_kst 1.810211e-01   p_cons 5.026316e-03   p_joint 7.631579e-03

Joint ci ratio: 9.472502e-02	ci left: 8.087653e-03	ci right 8.896690e-03	k: 1697	n:200000
Cons ci ratio: 1.233412e-01	ci left: 4.714956e-03	ci right 5.339523e-03	k: 1004	n:200000
KS ci ratio: 1.864389e-02	ci left: 1.793347e-01	ci right 1.827146e-01	k: 36204	n:200000
TSHZ1   200000 perm   63 sec   (3160 perm/sec)   p_kst 1.810200e-01   p_cons 5.020000e-03   p_joint 8.485000e-03

Joint ci ratio: 9.361158e-02	ci left: 7.893129e-03	ci right 8.672916e-03	k: 1738	n:210000
Cons ci ratio: 1.202685e-01	ci left: 4.730511e-03	ci right 5.340418e-03	k: 1056	n:210000
KS ci ratio: 1.820693e-02	ci left: 1.791750e-01	ci right 1.824719e-01	k: 37972	n:210000
TSHZ1   210000 perm   67 sec   (3121 perm/sec)   p_kst 1.808190e-01   p_cons 5.028571e-03   p_joint 8.276190e-03

Joint ci ratio: 9.266737e-02	ci left: 7.694138e-03	ci right 8.446182e-03	k: 1774	n:220000
Cons ci ratio: 1.182208e-01	ci left: 4.678645e-03	ci right 5.270876e-03	k: 1093	n:220000
KS ci ratio: 1.775217e-02	ci left: 1.798143e-01	ci right 1.830395e-01	k: 39913	n:220000
TSHZ1   220000 perm   71 sec   (3081 perm/sec)   p_kst 1.814227e-01   p_cons 4.968182e-03   p_joint 8.063636e-03

Joint ci ratio: 9.205861e-02	ci left: 7.461507e-03	ci right 8.185762e-03	k: 1798	n:230000
Cons ci ratio: 1.157101e-01	ci left: 4.677816e-03	ci right 5.256507e-03	k: 1141	n:230000
KS ci ratio: 1.735823e-02	ci left: 1.799137e-01	ci right 1.830683e-01	k: 41742	n:230000
TSHZ1   230000 perm   76 sec   (3044 perm/sec)   p_kst 1.814870e-01   p_cons 4.960870e-03   p_joint 7.817391e-03

Joint ci ratio: 8.471962e-02	ci left: 8.466920e-03	ci right 9.220014e-03	k: 2121	n:240000
Cons ci ratio: 1.131142e-01	ci left: 4.697423e-03	ci right 5.264633e-03	k: 1194	n:240000
KS ci ratio: 1.699511e-02	ci left: 1.799058e-01	ci right 1.829936e-01	k: 43547	n:240000
TSHZ1   240000 perm   80 sec   (3006 perm/sec)   p_kst 1.814458e-01   p_cons 4.975000e-03   p_joint 8.837500e-03

Joint ci ratio: 7.548531e-02	ci left: 1.026897e-02	ci right 1.107843e-02	k: 2667	n:250000
Cons ci ratio: 1.105078e-01	ci left: 4.731154e-03	ci right 5.288416e-03	k: 1251	n:250000
KS ci ratio: 1.663953e-02	ci left: 1.801543e-01	ci right 1.831811e-01	k: 45416	n:250000
TSHZ1   250000 perm   84 sec   (2969 perm/sec)   p_kst 1.816640e-01   p_cons 5.004000e-03   p_joint 1.066800e-02

Joint ci ratio: 7.523079e-02	ci left: 9.945649e-03	ci right 1.072686e-02	k: 2686	n:260000
Cons ci ratio: 1.086170e-01	ci left: 4.713778e-03	ci right 5.258885e-03	k: 1295	n:260000
KS ci ratio: 1.630326e-02	ci left: 1.804227e-01	ci right 1.833921e-01	k: 47295	n:260000
TSHZ1   260000 perm   89 sec   (2933 perm/sec)   p_kst 1.819038e-01   p_cons 4.980769e-03   p_joint 1.033077e-02

Joint ci ratio: 7.233745e-02	ci left: 1.036989e-02	ci right 1.115178e-02	k: 2904	n:270000
Cons ci ratio: 1.068601e-01	ci left: 4.694158e-03	ci right 5.227664e-03	k: 1338	n:270000
KS ci ratio: 1.599613e-02	ci left: 1.804945e-01	ci right 1.834086e-01	k: 49126	n:270000
TSHZ1   270000 perm   93 sec   (2899 perm/sec)   p_kst 1.819481e-01   p_cons 4.955556e-03   p_joint 1.075556e-02

Joint ci ratio: 7.128065e-02	ci left: 1.030466e-02	ci right 1.106981e-02	k: 2991	n:280000
Cons ci ratio: 1.049190e-01	ci left: 4.700353e-03	ci right 5.224260e-03	k: 1388	n:280000
KS ci ratio: 1.569706e-02	ci left: 1.807255e-01	ci right 1.835883e-01	k: 51003	n:280000
TSHZ1   280000 perm   98 sec   (2863 perm/sec)   p_kst 1.821536e-01   p_cons 4.957143e-03   p_joint 1.068214e-02

Joint ci ratio: 7.080536e-02	ci left: 1.008815e-02	ci right 1.083203e-02	k: 3032	n:290000
Cons ci ratio: 1.028290e-01	ci left: 4.729721e-03	ci right 5.245765e-03	k: 1445	n:290000
KS ci ratio: 1.542201e-02	ci left: 1.807897e-01	ci right 1.836029e-01	k: 52836	n:290000
TSHZ1   290000 perm   102 sec   (2831 perm/sec)   p_kst 1.821931e-01   p_cons 4.982759e-03   p_joint 1.045517e-02

Joint ci ratio: 7.392117e-02	ci left: 8.943239e-03	ci right 9.632957e-03	k: 2785	n:300000
Cons ci ratio: 1.046342e-01	ci left: 4.412930e-03	ci right 4.903381e-03	k: 1396	n:300000
KS ci ratio: 1.516822e-02	ci left: 1.807071e-01	ci right 1.834724e-01	k: 54626	n:300000
TSHZ1   300000 perm   107 sec   (2799 perm/sec)   p_kst 1.820867e-01   p_cons 4.653333e-03   p_joint 9.283333e-03

Joint ci ratio: 7.454222e-02	ci left: 8.512211e-03	ci right 9.174439e-03	k: 2740	n:310000
Cons ci ratio: 1.030607e-01	ci left: 4.405683e-03	ci right 4.887520e-03	k: 1439	n:310000
KS ci ratio: 1.491865e-02	ci left: 1.807879e-01	ci right 1.835084e-01	k: 56465	n:310000
TSHZ1   310000 perm   112 sec   (2768 perm/sec)   p_kst 1.821452e-01   p_cons 4.641935e-03   p_joint 8.838710e-03

Joint ci ratio: 7.061747e-02	ci left: 9.200563e-03	ci right 9.877114e-03	k: 3051	n:320000
Cons ci ratio: 1.015217e-01	ci left: 4.401987e-03	ci right 4.875802e-03	k: 1483	n:320000
KS ci ratio: 1.469255e-02	ci left: 1.806302e-01	ci right 1.833068e-01	k: 58229	n:320000
TSHZ1   320000 perm   117 sec   (2737 perm/sec)   p_kst 1.819656e-01   p_cons 4.634375e-03   p_joint 9.534375e-03

Joint ci ratio: 6.719031e-02	ci left: 9.865932e-03	ci right 1.055483e-02	k: 3368	n:330000
Cons ci ratio: 9.019829e-02	ci left: 5.434129e-03	ci right 5.950367e-03	k: 1877	n:330000
KS ci ratio: 1.446759e-02	ci left: 1.806637e-01	ci right 1.832995e-01	k: 60053	n:330000
TSHZ1   330000 perm   122 sec   (2707 perm/sec)   p_kst 1.819788e-01   p_cons 5.687879e-03   p_joint 1.020606e-02

Outputting figure to mutsig2_images.part000000000183/TSHZ1.7_3103_330000_0.18198_0.0056879_0.010206.png
                gene_name: TSHZ1
               theta_stop: 0.090 
                    nperm: 330000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0060 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0099 
    ci_joint_bounds_right: 0.011 

Current progress: 20 percent done.
TTC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
KS ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
TTC13   10000 perm   2 sec   (4716 perm/sec)   p_kst 4.440000e-01   p_cons 1.692000e-01   p_joint 2.983000e-01

Outputting figure to mutsig2_images.part000000000183/TTC13.7_2675_10000_0.444_0.1692_0.2983.png
                gene_name: TTC13
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 22 percent done.
TTC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
TTC27   10000 perm   2 sec   (5099 perm/sec)   p_kst 2.500000e-03   p_cons 4.280000e-02   p_joint 9.100000e-03

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 1.306830e-01	ci left: 4.023021e-02	ci right 4.590360e-02	k: 860	n:20000
KS ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
TTC27   20000 perm   4 sec   (4624 perm/sec)   p_kst 2.500000e-03   p_cons 4.300000e-02   p_joint 5.350000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 1.149767e-01	ci left: 3.515152e-02	ci right 3.947201e-02	k: 1118	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
TTC27   30000 perm   7 sec   (4421 perm/sec)   p_kst 2.533333e-03   p_cons 3.726667e-02   p_joint 2.966667e-03

Joint ci ratio: 3.975279e-01	ci left: 1.944427e-03	ci right 2.930033e-03	k: 96	n:40000
Cons ci ratio: 9.885272e-02	ci left: 3.595217e-02	ci right 3.971530e-02	k: 1512	n:40000
KS ci ratio: 3.915048e-01	ci left: 2.011999e-03	ci right 3.012412e-03	k: 99	n:40000
TTC27   40000 perm   9 sec   (4310 perm/sec)   p_kst 2.475000e-03   p_cons 3.780000e-02   p_joint 2.400000e-03

Joint ci ratio: 2.124959e-01	ci left: 6.041582e-03	ci right 7.496570e-03	k: 337	n:50000
Cons ci ratio: 8.592687e-02	ci left: 3.824036e-02	ci right 4.169331e-02	k: 1997	n:50000
KS ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
TTC27   50000 perm   12 sec   (4225 perm/sec)   p_kst 2.440000e-03   p_cons 3.994000e-02   p_joint 6.740000e-03

Joint ci ratio: 2.171872e-01	ci left: 4.813530e-03	ci right 6.001748e-03	k: 323	n:60000
Cons ci ratio: 7.882805e-02	ci left: 3.802083e-02	ci right 4.115724e-02	k: 2374	n:60000
KS ci ratio: 3.196637e-01	ci left: 2.100991e-03	ci right 2.914990e-03	k: 149	n:60000
TTC27   60000 perm   14 sec   (4147 perm/sec)   p_kst 2.483333e-03   p_cons 3.956667e-02   p_joint 5.383333e-03

Joint ci ratio: 2.069372e-01	ci left: 4.572224e-03	ci right 5.640860e-03	k: 356	n:70000
Cons ci ratio: 7.307454e-02	ci left: 3.804097e-02	ci right 4.094022e-02	k: 2763	n:70000
KS ci ratio: 2.901897e-01	ci left: 2.223115e-03	ci right 2.990471e-03	k: 181	n:70000
TTC27   70000 perm   17 sec   (4075 perm/sec)   p_kst 2.585714e-03   p_cons 3.947143e-02   p_joint 5.085714e-03

Joint ci ratio: 2.146897e-01	ci left: 3.704506e-03	ci right 4.607037e-03	k: 331	n:80000
Cons ci ratio: 6.865948e-02	ci left: 3.780420e-02	ci right 4.050435e-02	k: 3131	n:80000
KS ci ratio: 2.833007e-01	ci left: 2.049609e-03	ci right 2.737273e-03	k: 190	n:80000
TTC27   80000 perm   20 sec   (4008 perm/sec)   p_kst 2.375000e-03   p_cons 3.913750e-02   p_joint 4.137500e-03

Joint ci ratio: 2.395427e-01	ci left: 2.611451e-03	ci right 3.332287e-03	k: 266	n:90000
Cons ci ratio: 6.649576e-02	ci left: 3.594016e-02	ci right 3.842312e-02	k: 3345	n:90000
KS ci ratio: 2.682745e-01	ci left: 2.049426e-03	ci right 2.694429e-03	k: 212	n:90000
TTC27   90000 perm   23 sec   (3901 perm/sec)   p_kst 2.355556e-03   p_cons 3.716667e-02   p_joint 2.955556e-03

Joint ci ratio: 2.404832e-01	ci left: 2.331467e-03	ci right 2.977918e-03	k: 264	n:100000
Cons ci ratio: 6.285358e-02	ci left: 3.626198e-02	ci right 3.862495e-02	k: 3743	n:100000
KS ci ratio: 2.554107e-01	ci left: 2.050052e-03	ci right 2.659388e-03	k: 234	n:100000
TTC27   100000 perm   26 sec   (3848 perm/sec)   p_kst 2.340000e-03   p_cons 3.743000e-02   p_joint 2.640000e-03

Joint ci ratio: 2.290949e-01	ci left: 2.350541e-03	ci right 2.967056e-03	k: 291	n:110000
Cons ci ratio: 6.011381e-02	ci left: 3.609824e-02	ci right 3.834442e-02	k: 4093	n:110000
KS ci ratio: 2.466527e-01	ci left: 2.008503e-03	ci right 2.581880e-03	k: 251	n:110000
TTC27   110000 perm   29 sec   (3795 perm/sec)   p_kst 2.281818e-03   p_cons 3.720909e-02   p_joint 2.645455e-03

Joint ci ratio: 2.283379e-01	ci left: 2.170351e-03	ci right 2.737455e-03	k: 293	n:120000
Cons ci ratio: 5.732293e-02	ci left: 3.643211e-02	ci right 3.859032e-02	k: 4500	n:120000
KS ci ratio: 2.331572e-01	ci left: 2.076119e-03	ci right 2.631702e-03	k: 281	n:120000
TTC27   120000 perm   32 sec   (3743 perm/sec)   p_kst 2.341667e-03   p_cons 3.750000e-02   p_joint 2.441667e-03

Joint ci ratio: 2.279712e-01	ci left: 2.010634e-03	ci right 2.535040e-03	k: 294	n:130000
Cons ci ratio: 5.520411e-02	ci left: 3.630675e-02	ci right 3.837549e-02	k: 4853	n:130000
KS ci ratio: 2.220159e-01	ci left: 2.126789e-03	ci right 2.665022e-03	k: 310	n:130000
TTC27   130000 perm   35 sec   (3693 perm/sec)   p_kst 2.384615e-03   p_cons 3.733077e-02   p_joint 2.261538e-03

Joint ci ratio: 2.486988e-01	ci left: 1.551264e-03	ci right 1.998348e-03	k: 247	n:140000
Cons ci ratio: 5.324570e-02	ci left: 3.627814e-02	ci right 3.826965e-02	k: 5217	n:140000
KS ci ratio: 2.145583e-01	ci left: 2.123429e-03	ci right 2.640384e-03	k: 332	n:140000
TTC27   140000 perm   38 sec   (3638 perm/sec)   p_kst 2.371429e-03   p_cons 3.726429e-02   p_joint 1.764286e-03

Joint ci ratio: 2.433658e-01	ci left: 1.516655e-03	ci right 1.942975e-03	k: 258	n:150000
Cons ci ratio: 5.141978e-02	ci left: 3.634007e-02	ci right 3.826453e-02	k: 5594	n:150000
KS ci ratio: 2.086907e-01	ci left: 2.101818e-03	ci right 2.597731e-03	k: 351	n:150000
TTC27   150000 perm   42 sec   (3582 perm/sec)   p_kst 2.340000e-03   p_cons 3.729333e-02   p_joint 1.720000e-03

Joint ci ratio: 1.600004e-01	ci left: 3.438401e-03	ci right 4.042301e-03	k: 597	n:160000
Cons ci ratio: 4.978699e-02	ci left: 3.637058e-02	ci right 3.823374e-02	k: 5967	n:160000
KS ci ratio: 1.998008e-01	ci left: 2.160237e-03	ci right 2.645576e-03	k: 383	n:160000
TTC27   160000 perm   45 sec   (3528 perm/sec)   p_kst 2.393750e-03   p_cons 3.729375e-02   p_joint 3.731250e-03

Joint ci ratio: 1.602873e-01	ci left: 3.224820e-03	ci right 3.792320e-03	k: 595	n:170000
Cons ci ratio: 4.837979e-02	ci left: 3.628207e-02	ci right 3.808669e-02	k: 6320	n:170000
KS ci ratio: 1.955239e-01	ci left: 2.128211e-03	ci right 2.594901e-03	k: 400	n:170000
TTC27   170000 perm   49 sec   (3476 perm/sec)   p_kst 2.352941e-03   p_cons 3.717647e-02   p_joint 3.500000e-03

Joint ci ratio: 1.633561e-01	ci left: 2.928353e-03	ci right 3.454515e-03	k: 573	n:180000
Cons ci ratio: 4.706356e-02	ci left: 3.623703e-02	ci right 3.798903e-02	k: 6679	n:180000
KS ci ratio: 1.888127e-01	ci left: 2.163343e-03	ci right 2.619587e-03	k: 429	n:180000
TTC27   180000 perm   53 sec   (3426 perm/sec)   p_kst 2.383333e-03   p_cons 3.710556e-02   p_joint 3.183333e-03

Joint ci ratio: 1.588531e-01	ci left: 2.940914e-03	ci right 3.453377e-03	k: 606	n:190000
Cons ci ratio: 4.579520e-02	ci left: 3.628060e-02	ci right 3.798619e-02	k: 7054	n:190000
KS ci ratio: 1.847770e-01	ci left: 2.144805e-03	ci right 2.586387e-03	k: 448	n:190000
TTC27   190000 perm   56 sec   (3378 perm/sec)   p_kst 2.357895e-03   p_cons 3.712632e-02   p_joint 3.189474e-03

Joint ci ratio: 1.606001e-01	ci left: 2.731442e-03	ci right 3.213143e-03	k: 593	n:200000
Cons ci ratio: 4.469292e-02	ci left: 3.621157e-02	ci right 3.787188e-02	k: 7407	n:200000
KS ci ratio: 1.809895e-01	ci left: 2.128214e-03	ci right 2.556414e-03	k: 467	n:200000
TTC27   200000 perm   60 sec   (3333 perm/sec)   p_kst 2.335000e-03   p_cons 3.703500e-02   p_joint 2.965000e-03

Joint ci ratio: 1.574530e-01	ci left: 2.711109e-03	ci right 3.178969e-03	k: 617	n:210000
Cons ci ratio: 4.353858e-02	ci left: 3.635689e-02	ci right 3.797973e-02	k: 7804	n:210000
KS ci ratio: 1.744006e-01	ci left: 2.190682e-03	ci right 2.613716e-03	k: 503	n:210000
TTC27   210000 perm   64 sec   (3287 perm/sec)   p_kst 2.395238e-03   p_cons 3.716190e-02   p_joint 2.938095e-03

Joint ci ratio: 1.598146e-01	ci left: 2.509285e-03	ci right 2.949434e-03	k: 599	n:220000
Cons ci ratio: 4.246659e-02	ci left: 3.649399e-02	ci right 3.808186e-02	k: 8202	n:220000
KS ci ratio: 1.697476e-01	ci left: 2.212900e-03	ci right 2.627656e-03	k: 531	n:220000
TTC27   220000 perm   68 sec   (3245 perm/sec)   p_kst 2.413636e-03   p_cons 3.728182e-02   p_joint 2.722727e-03

Joint ci ratio: 1.559622e-01	ci left: 2.525469e-03	ci right 2.956779e-03	k: 629	n:230000
Cons ci ratio: 4.156806e-02	ci left: 3.645175e-02	ci right 3.800342e-02	k: 8561	n:230000
KS ci ratio: 1.650056e-01	ci left: 2.245828e-03	ci right 2.653829e-03	k: 562	n:230000
TTC27   230000 perm   72 sec   (3201 perm/sec)   p_kst 2.443478e-03   p_cons 3.722174e-02   p_joint 2.734783e-03

Joint ci ratio: 1.609118e-01	ci left: 2.268159e-03	ci right 2.669007e-03	k: 591	n:240000
Cons ci ratio: 4.063209e-02	ci left: 3.657426e-02	ci right 3.809527e-02	k: 8959	n:240000
KS ci ratio: 1.615974e-01	ci left: 2.248165e-03	ci right 2.647336e-03	k: 586	n:240000
TTC27   240000 perm   76 sec   (3157 perm/sec)   p_kst 2.441667e-03   p_cons 3.732917e-02   p_joint 2.462500e-03

Joint ci ratio: 1.616053e-01	ci left: 2.158230e-03	ci right 2.541453e-03	k: 586	n:250000
Cons ci ratio: 3.981855e-02	ci left: 3.657640e-02	ci right 3.806635e-02	k: 9329	n:250000
KS ci ratio: 1.573626e-01	ci left: 2.281134e-03	ci right 2.674542e-03	k: 618	n:250000
TTC27   250000 perm   80 sec   (3117 perm/sec)   p_kst 2.472000e-03   p_cons 3.731600e-02   p_joint 2.344000e-03

Joint ci ratio: 1.699394e-01	ci left: 1.868743e-03	ci right 2.219429e-03	k: 530	n:260000
Cons ci ratio: 3.899357e-02	ci left: 3.668534e-02	ci right 3.814807e-02	k: 9727	n:260000
KS ci ratio: 1.470175e-01	ci left: 2.526407e-03	ci right 2.930959e-03	k: 708	n:260000
TTC27   260000 perm   84 sec   (3080 perm/sec)   p_kst 2.723077e-03   p_cons 3.741154e-02   p_joint 2.038462e-03

Joint ci ratio: 1.375277e-01	ci left: 2.793634e-03	ci right 3.209740e-03	k: 809	n:270000
Cons ci ratio: 3.818062e-02	ci left: 3.685623e-02	ci right 3.829446e-02	k: 10144	n:270000
KS ci ratio: 1.436126e-01	ci left: 2.554186e-03	ci right 2.952903e-03	k: 742	n:270000
TTC27   270000 perm   89 sec   (3045 perm/sec)   p_kst 2.748148e-03   p_cons 3.757037e-02   p_joint 2.996296e-03

Joint ci ratio: 1.352111e-01	ci left: 2.790449e-03	ci right 3.198517e-03	k: 837	n:280000
Cons ci ratio: 3.744225e-02	ci left: 3.696565e-02	ci right 3.837965e-02	k: 10547	n:280000
KS ci ratio: 1.411643e-01	ci left: 2.552514e-03	ci right 2.943605e-03	k: 768	n:280000
TTC27   280000 perm   93 sec   (3010 perm/sec)   p_kst 2.742857e-03   p_cons 3.766786e-02   p_joint 2.989286e-03

Joint ci ratio: 1.332394e-01	ci left: 2.777538e-03	ci right 3.177325e-03	k: 862	n:290000
Cons ci ratio: 3.678704e-02	ci left: 3.698575e-02	ci right 3.837523e-02	k: 10926	n:290000
KS ci ratio: 1.383147e-01	ci left: 2.570985e-03	ci right 2.956300e-03	k: 800	n:290000
TTC27   290000 perm   97 sec   (2974 perm/sec)   p_kst 2.758621e-03   p_cons 3.767586e-02   p_joint 2.972414e-03

Joint ci ratio: 1.333236e-01	ci left: 2.681722e-03	ci right 3.067980e-03	k: 861	n:300000
Cons ci ratio: 3.615343e-02	ci left: 3.702784e-02	ci right 3.839445e-02	k: 11312	n:300000
KS ci ratio: 1.362061e-01	ci left: 2.565757e-03	ci right 2.943950e-03	k: 825	n:300000
TTC27   300000 perm   102 sec   (2944 perm/sec)   p_kst 2.750000e-03   p_cons 3.770667e-02   p_joint 2.870000e-03

Joint ci ratio: 1.314321e-01	ci left: 2.673189e-03	ci right 3.052329e-03	k: 886	n:310000
Cons ci ratio: 3.556885e-02	ci left: 3.703222e-02	ci right 3.837644e-02	k: 11687	n:310000
KS ci ratio: 1.345084e-01	ci left: 2.548437e-03	ci right 2.919021e-03	k: 846	n:310000
TTC27   310000 perm   106 sec   (2914 perm/sec)   p_kst 2.729032e-03   p_cons 3.770000e-02   p_joint 2.858065e-03

Joint ci ratio: 1.296902e-01	ci left: 2.662201e-03	ci right 3.034393e-03	k: 910	n:320000
Cons ci ratio: 3.500722e-02	ci left: 3.704579e-02	ci right 3.836885e-02	k: 12065	n:320000
KS ci ratio: 1.323387e-01	ci left: 2.553378e-03	ci right 2.918220e-03	k: 874	n:320000
TTC27   320000 perm   111 sec   (2883 perm/sec)   p_kst 2.731250e-03   p_cons 3.770312e-02   p_joint 2.843750e-03

Joint ci ratio: 1.309265e-01	ci left: 2.531681e-03	ci right 2.889262e-03	k: 893	n:330000
Cons ci ratio: 3.450309e-02	ci left: 3.699259e-02	ci right 3.829434e-02	k: 12421	n:330000
KS ci ratio: 1.299105e-01	ci left: 2.572725e-03	ci right 2.933065e-03	k: 907	n:330000
TTC27   330000 perm   116 sec   (2851 perm/sec)   p_kst 2.748485e-03   p_cons 3.763939e-02   p_joint 2.706061e-03

Joint ci ratio: 1.299158e-01	ci left: 2.497050e-03	ci right 2.846806e-03	k: 907	n:340000
Cons ci ratio: 3.405614e-02	ci left: 3.686680e-02	ci right 3.814698e-02	k: 12751	n:340000
KS ci ratio: 1.287830e-01	ci left: 2.542590e-03	ci right 2.895382e-03	k: 923	n:340000
TTC27   340000 perm   120 sec   (2822 perm/sec)   p_kst 2.714706e-03   p_cons 3.750294e-02   p_joint 2.667647e-03

Joint ci ratio: 1.479078e-01	ci left: 1.854697e-03	ci right 2.153644e-03	k: 700	n:350000
Cons ci ratio: 3.357016e-02	ci left: 3.686733e-02	ci right 3.812891e-02	k: 13123	n:350000
KS ci ratio: 1.268748e-01	ci left: 2.547386e-03	ci right 2.895214e-03	k: 951	n:350000
TTC27   350000 perm   126 sec   (2786 perm/sec)   p_kst 2.717143e-03   p_cons 3.749429e-02   p_joint 2.000000e-03

Joint ci ratio: 1.478063e-01	ci left: 1.805850e-03	ci right 2.096705e-03	k: 701	n:360000
Cons ci ratio: 3.307387e-02	ci left: 3.693409e-02	ci right 3.817892e-02	k: 13519	n:360000
KS ci ratio: 1.249213e-01	ci left: 2.557335e-03	ci right 2.900747e-03	k: 981	n:360000
TTC27   360000 perm   131 sec   (2756 perm/sec)   p_kst 2.725000e-03   p_cons 3.755278e-02   p_joint 1.947222e-03

Joint ci ratio: 1.135958e-01	ci left: 3.025820e-03	ci right 3.392839e-03	k: 1186	n:370000
Cons ci ratio: 3.262454e-02	ci left: 3.694106e-02	ci right 3.816890e-02	k: 13894	n:370000
KS ci ratio: 1.232386e-01	ci left: 2.558926e-03	ci right 2.897585e-03	k: 1008	n:370000
TTC27   370000 perm   136 sec   (2724 perm/sec)   p_kst 2.724324e-03   p_cons 3.755135e-02   p_joint 3.205405e-03

Joint ci ratio: 1.123727e-01	ci left: 3.012679e-03	ci right 3.373909e-03	k: 1212	n:380000
Cons ci ratio: 3.220712e-02	ci left: 3.691644e-02	ci right 3.812747e-02	k: 14257	n:380000
KS ci ratio: 1.217991e-01	ci left: 2.552808e-03	ci right 2.886426e-03	k: 1032	n:380000
TTC27   380000 perm   141 sec   (2695 perm/sec)   p_kst 2.715789e-03   p_cons 3.751842e-02   p_joint 3.189474e-03

Joint ci ratio: 1.120996e-01	ci left: 2.950379e-03	ci right 3.303222e-03	k: 1218	n:390000
Cons ci ratio: 3.175795e-02	ci left: 3.700005e-02	ci right 3.819658e-02	k: 14662	n:390000
KS ci ratio: 1.201811e-01	ci left: 2.556974e-03	ci right 2.886381e-03	k: 1060	n:390000
TTC27   390000 perm   146 sec   (2666 perm/sec)   p_kst 2.717949e-03   p_cons 3.759487e-02   p_joint 3.123077e-03

Joint ci ratio: 1.345499e-01	ci left: 1.974999e-03	ci right 2.262289e-03	k: 846	n:400000
Cons ci ratio: 3.134653e-02	ci left: 3.703492e-02	ci right 3.821679e-02	k: 15049	n:400000
KS ci ratio: 1.190101e-01	ci left: 2.543978e-03	ci right 2.868293e-03	k: 1081	n:400000
TTC27   400000 perm   152 sec   (2638 perm/sec)   p_kst 2.702500e-03   p_cons 3.762250e-02   p_joint 2.115000e-03

Joint ci ratio: 1.332977e-01	ci left: 1.964545e-03	ci right 2.247444e-03	k: 862	n:410000
Cons ci ratio: 3.096946e-02	ci left: 3.702462e-02	ci right 3.819169e-02	k: 15418	n:410000
KS ci ratio: 1.176589e-01	ci left: 2.541100e-03	ci right 2.861115e-03	k: 1106	n:410000
TTC27   410000 perm   157 sec   (2610 perm/sec)   p_kst 2.697561e-03   p_cons 3.760488e-02   p_joint 2.102439e-03

Joint ci ratio: 1.310381e-01	ci left: 1.986838e-03	ci right 2.267720e-03	k: 892	n:420000
Cons ci ratio: 3.059762e-02	ci left: 3.703379e-02	ci right 3.818689e-02	k: 15795	n:420000
KS ci ratio: 1.159426e-01	ci left: 2.556875e-03	ci right 2.873857e-03	k: 1139	n:420000
TTC27   420000 perm   163 sec   (2582 perm/sec)   p_kst 2.711905e-03   p_cons 3.760714e-02   p_joint 2.123810e-03

Joint ci ratio: 1.295951e-01	ci left: 1.985628e-03	ci right 2.263010e-03	k: 912	n:430000
Cons ci ratio: 3.024178e-02	ci left: 3.703569e-02	ci right 3.817520e-02	k: 16169	n:430000
KS ci ratio: 1.141530e-01	ci left: 2.578726e-03	ci right 2.893151e-03	k: 1175	n:430000
TTC27   430000 perm   168 sec   (2555 perm/sec)   p_kst 2.732558e-03   p_cons 3.760233e-02   p_joint 2.120930e-03

Joint ci ratio: 1.283367e-01	ci left: 1.980089e-03	ci right 2.253806e-03	k: 930	n:440000
Cons ci ratio: 2.992439e-02	ci left: 3.697440e-02	ci right 3.809988e-02	k: 16515	n:440000
KS ci ratio: 1.133857e-01	ci left: 2.555445e-03	ci right 2.864797e-03	k: 1191	n:440000
TTC27   440000 perm   174 sec   (2528 perm/sec)   p_kst 2.706818e-03   p_cons 3.753409e-02   p_joint 2.113636e-03

Joint ci ratio: 1.267799e-01	ci left: 1.985567e-03	ci right 2.256463e-03	k: 953	n:450000
Cons ci ratio: 2.961040e-02	ci left: 3.693134e-02	ci right 3.804351e-02	k: 16868	n:450000
KS ci ratio: 1.119849e-01	ci left: 2.563446e-03	ci right 2.869679e-03	k: 1221	n:450000
TTC27   450000 perm   180 sec   (2503 perm/sec)   p_kst 2.713333e-03   p_cons 3.748444e-02   p_joint 2.117778e-03

Joint ci ratio: 9.991888e-02	ci left: 3.168110e-03	ci right 3.503411e-03	k: 1533	n:460000
Cons ci ratio: 2.928931e-02	ci left: 3.693123e-02	ci right 3.803113e-02	k: 17240	n:460000
KS ci ratio: 1.108569e-01	ci left: 2.560552e-03	ci right 2.863157e-03	k: 1246	n:460000
TTC27   460000 perm   186 sec   (2477 perm/sec)   p_kst 2.708696e-03   p_cons 3.747826e-02   p_joint 3.332609e-03

Joint ci ratio: 9.873485e-02	ci left: 3.177472e-03	ci right 3.509548e-03	k: 1570	n:470000
Cons ci ratio: 2.897417e-02	ci left: 3.694174e-02	ci right 3.802993e-02	k: 17617	n:470000
KS ci ratio: 1.096760e-01	ci left: 2.561935e-03	ci right 2.861269e-03	k: 1273	n:470000
TTC27   470000 perm   192 sec   (2453 perm/sec)   p_kst 2.708511e-03   p_cons 3.748298e-02   p_joint 3.340426e-03

Joint ci ratio: 9.979541e-02	ci left: 3.044221e-03	ci right 3.365989e-03	k: 1537	n:480000
Cons ci ratio: 2.865411e-02	ci left: 3.698912e-02	ci right 3.806647e-02	k: 18012	n:480000
KS ci ratio: 1.086996e-01	ci left: 2.555169e-03	ci right 2.850885e-03	k: 1296	n:480000
TTC27   480000 perm   198 sec   (2430 perm/sec)   p_kst 2.700000e-03   p_cons 3.752500e-02   p_joint 3.202083e-03

Joint ci ratio: 9.896304e-02	ci left: 3.033835e-03	ci right 3.351676e-03	k: 1563	n:490000
Cons ci ratio: 2.837326e-02	ci left: 3.696166e-02	ci right 3.802749e-02	k: 18371	n:490000
KS ci ratio: 1.075449e-01	ci left: 2.558620e-03	ci right 2.851391e-03	k: 1324	n:490000
TTC27   490000 perm   203 sec   (2409 perm/sec)   p_kst 2.702041e-03   p_cons 3.749184e-02   p_joint 3.189796e-03

Joint ci ratio: 9.874479e-02	ci left: 2.986809e-03	ci right 3.298992e-03	k: 1570	n:500000
Cons ci ratio: 2.809349e-02	ci left: 3.695323e-02	ci right 3.800814e-02	k: 18739	n:500000
KS ci ratio: 1.065842e-01	ci left: 2.554162e-03	ci right 2.843648e-03	k: 1348	n:500000
TTC27   500000 perm   209 sec   (2388 perm/sec)   p_kst 2.696000e-03   p_cons 3.747800e-02   p_joint 3.140000e-03

Joint ci ratio: 9.799978e-02	ci left: 2.974144e-03	ci right 3.282524e-03	k: 1594	n:510000
Cons ci ratio: 2.781580e-02	ci left: 3.696076e-02	ci right 3.800529e-02	k: 19115	n:510000
KS ci ratio: 1.059200e-01	ci left: 2.536527e-03	ci right 2.822111e-03	k: 1365	n:510000
TTC27   510000 perm   215 sec   (2368 perm/sec)   p_kst 2.676471e-03   p_cons 3.748039e-02   p_joint 3.125490e-03

Joint ci ratio: 9.715107e-02	ci left: 2.969481e-03	ci right 3.274558e-03	k: 1622	n:520000
Cons ci ratio: 2.754691e-02	ci left: 3.696614e-02	ci right 3.800056e-02	k: 19490	n:520000
KS ci ratio: 1.050398e-01	ci left: 2.530811e-03	ci right 2.813237e-03	k: 1388	n:520000
TTC27   520000 perm   222 sec   (2347 perm/sec)   p_kst 2.669231e-03   p_cons 3.748077e-02   p_joint 3.119231e-03

Joint ci ratio: 9.881671e-02	ci left: 2.814052e-03	ci right 3.108404e-03	k: 1568	n:530000
Cons ci ratio: 2.726572e-02	ci left: 3.702385e-02	ci right 3.804914e-02	k: 19893	n:530000
KS ci ratio: 1.039967e-01	ci left: 2.534509e-03	ci right 2.814368e-03	k: 1416	n:530000
TTC27   530000 perm   228 sec   (2325 perm/sec)   p_kst 2.671698e-03   p_cons 3.753396e-02   p_joint 2.958491e-03

Joint ci ratio: 9.904125e-02	ci left: 2.749293e-03	ci right 3.037563e-03	k: 1561	n:540000
Cons ci ratio: 2.702688e-02	ci left: 3.698932e-02	ci right 3.800454e-02	k: 20247	n:540000
KS ci ratio: 1.030914e-01	ci left: 2.532671e-03	ci right 2.809745e-03	k: 1441	n:540000
TTC27   540000 perm   234 sec   (2304 perm/sec)   p_kst 2.668519e-03   p_cons 3.749444e-02   p_joint 2.890741e-03

Joint ci ratio: 9.794940e-02	ci left: 2.761375e-03	ci right 3.047537e-03	k: 1596	n:550000
Cons ci ratio: 2.677665e-02	ci left: 3.700305e-02	ci right 3.800910e-02	k: 20627	n:550000
KS ci ratio: 1.020004e-01	ci left: 2.541541e-03	ci right 2.816467e-03	k: 1472	n:550000
TTC27   550000 perm   241 sec   (2284 perm/sec)   p_kst 2.676364e-03   p_cons 3.750364e-02   p_joint 2.901818e-03

Joint ci ratio: 9.701218e-02	ci left: 2.766073e-03	ci right 3.049823e-03	k: 1627	n:560000
Cons ci ratio: 2.652866e-02	ci left: 3.702875e-02	ci right 3.802604e-02	k: 21014	n:560000
KS ci ratio: 1.010445e-01	ci left: 2.544887e-03	ci right 2.817442e-03	k: 1500	n:560000
TTC27   560000 perm   247 sec   (2264 perm/sec)   p_kst 2.678571e-03   p_cons 3.752500e-02   p_joint 2.905357e-03

Joint ci ratio: 9.636387e-02	ci left: 2.755208e-03	ci right 3.035848e-03	k: 1649	n:570000
Cons ci ratio: 2.629254e-02	ci left: 3.703965e-02	ci right 3.802822e-02	k: 21393	n:570000
KS ci ratio: 9.978822e-02	ci left: 2.565233e-03	ci right 2.836352e-03	k: 1538	n:570000
TTC27   570000 perm   254 sec   (2244 perm/sec)   p_kst 2.698246e-03   p_cons 3.753158e-02   p_joint 2.892982e-03

Outputting figure to mutsig2_images.part000000000183/TTC27.7_2612_570000_0.0026982_0.037532_0.002893.png
                gene_name: TTC27
               theta_stop: 0.100 
                    nperm: 570000 
                     p_ks: 0.0027 
        ci_ks_bounds_left: 0.0026 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0028 
    ci_joint_bounds_right: 0.0030 

Current progress: 24 percent done.
TSSK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
TSSK1B   10000 perm   2 sec   (5369 perm/sec)   p_kst 7.231000e-01   p_cons 6.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSSK1B.6_1108_10000_0.7231_0.6439_1.png
                gene_name: TSSK1B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TTBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 1.630117e-02	ci left: 8.454992e-01	ci right 8.594947e-01	k: 8526	n:10000
KS ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
TTBK2   10000 perm   2 sec   (5018 perm/sec)   p_kst 5.620000e-02   p_cons 8.526000e-01   p_joint 1.240000e-01

Joint ci ratio: 7.318470e-02	ci left: 1.208400e-01	ci right 1.300692e-01	k: 2508	n:20000
Cons ci ratio: 1.134885e-02	ci left: 8.515138e-01	ci right 8.612824e-01	k: 17129	n:20000
KS ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
TTBK2   20000 perm   4 sec   (4552 perm/sec)   p_kst 5.490000e-02   p_cons 8.564500e-01   p_joint 1.254000e-01

Joint ci ratio: 6.866098e-02	ci left: 9.462518e-02	ci right 1.013862e-01	k: 2939	n:30000
Cons ci ratio: 9.217679e-03	ci left: 8.537291e-01	ci right 8.616681e-01	k: 25732	n:30000
KS ci ratio: 9.851152e-02	ci left: 4.765843e-02	ci right 5.262915e-02	k: 1503	n:30000
TTBK2   30000 perm   7 sec   (4353 perm/sec)   p_kst 5.010000e-02   p_cons 8.577333e-01   p_joint 9.796667e-02

Outputting figure to mutsig2_images.part000000000183/TTBK2.6_3791_30000_0.0501_0.85773_0.097967.png
                gene_name: TTBK2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 28 percent done.
TTC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
Cons ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
KS ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
TTC15   10000 perm   2 sec   (5232 perm/sec)   p_kst 3.100000e-02   p_cons 3.072000e-01   p_joint 4.410000e-02

Joint ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
Cons ci ratio: 4.399527e-02	ci left: 2.778565e-01	ci right 2.904063e-01	k: 5682	n:20000
KS ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
TTC15   20000 perm   4 sec   (4708 perm/sec)   p_kst 3.375000e-02   p_cons 2.841000e-01   p_joint 5.515000e-02

Joint ci ratio: 9.154307e-02	ci left: 5.495723e-02	ci right 6.026218e-02	k: 1727	n:30000
Cons ci ratio: 3.446982e-02	ci left: 2.960113e-01	ci right 3.064272e-01	k: 9036	n:30000
KS ci ratio: 1.199052e-01	ci left: 3.233379e-02	ci right 3.649034e-02	k: 1031	n:30000
TTC15   30000 perm   7 sec   (4485 perm/sec)   p_kst 3.436667e-02   p_cons 3.012000e-01   p_joint 5.756667e-02

Joint ci ratio: 8.657873e-02	ci left: 4.663549e-02	ci right 5.088032e-02	k: 1949	n:40000
Cons ci ratio: 2.986654e-02	ci left: 2.965070e-01	ci right 3.055219e-01	k: 12040	n:40000
KS ci ratio: 1.051948e-01	ci left: 3.178243e-02	ci right 3.533570e-02	k: 1341	n:40000
TTC15   40000 perm   9 sec   (4346 perm/sec)   p_kst 3.352500e-02   p_cons 3.010000e-01   p_joint 4.872500e-02

Joint ci ratio: 8.401777e-02	ci left: 3.996446e-02	ci right 4.348900e-02	k: 2085	n:50000
Cons ci ratio: 2.676719e-02	ci left: 2.961444e-01	ci right 3.041989e-01	k: 15008	n:50000
KS ci ratio: 9.474882e-02	ci left: 3.152953e-02	ci right 3.468498e-02	k: 1654	n:50000
TTC15   50000 perm   12 sec   (4239 perm/sec)   p_kst 3.308000e-02   p_cons 3.001600e-01   p_joint 4.170000e-02

Outputting figure to mutsig2_images.part000000000183/TTC15.6_2252_50000_0.03308_0.30016_0.0417.png
                gene_name: TTC15
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 30 percent done.
TTC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
Cons ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
KS ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
TTC16   10000 perm   2 sec   (4935 perm/sec)   p_kst 1.188000e-01   p_cons 3.903000e-01   p_joint 1.738000e-01

Joint ci ratio: 5.834242e-02	ci left: 1.787499e-01	ci right 1.895421e-01	k: 3682	n:20000
Cons ci ratio: 3.553791e-02	ci left: 3.714723e-01	ci right 3.849631e-01	k: 7564	n:20000
KS ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
TTC16   20000 perm   4 sec   (4503 perm/sec)   p_kst 1.177000e-01   p_cons 3.782000e-01   p_joint 1.841000e-01

Outputting figure to mutsig2_images.part000000000183/TTC16.6_2678_20000_0.1177_0.3782_0.1841.png
                gene_name: TTC16
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 31 percent done.
TTC23L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
KS ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
TTC23L   10000 perm   2 sec   (6323 perm/sec)   p_kst 4.952000e-01   p_cons 5.120000e-02   p_joint 1.329000e-01

Joint ci ratio: 7.439322e-02	ci left: 1.173467e-01	ci right 1.264635e-01	k: 2437	n:20000
Cons ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
KS ci ratio: 2.783315e-02	ci left: 4.909463e-01	ci right 5.048543e-01	k: 9958	n:20000
TTC23L   20000 perm   4 sec   (5631 perm/sec)   p_kst 4.979000e-01   p_cons 4.610000e-02   p_joint 1.218500e-01

Joint ci ratio: 6.959649e-02	ci left: 9.229527e-02	ci right 9.898328e-02	k: 2868	n:30000
Cons ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
KS ci ratio: 2.273079e-02	ci left: 4.921259e-01	ci right 5.034745e-01	k: 14934	n:30000
TTC23L   30000 perm   6 sec   (5347 perm/sec)   p_kst 4.978000e-01   p_cons 4.633333e-02   p_joint 9.560000e-02

Joint ci ratio: 5.621841e-02	ci left: 1.053200e-01	ci right 1.114370e-01	k: 4334	n:40000
Cons ci ratio: 8.855387e-02	ci left: 4.462828e-02	ci right 4.878785e-02	k: 1867	n:40000
KS ci ratio: 1.968569e-02	ci left: 4.928879e-01	ci right 5.027124e-01	k: 19912	n:40000
TTC23L   40000 perm   8 sec   (5147 perm/sec)   p_kst 4.978000e-01   p_cons 4.667500e-02   p_joint 1.083500e-01

Outputting figure to mutsig2_images.part000000000183/TTC23L.6_1122_40000_0.4978_0.046675_0.10835.png
                gene_name: TTC23L
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 33 percent done.
TTC37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
Cons ci ratio: 2.166601e-02	ci left: 7.575753e-01	ci right 7.742695e-01	k: 7660	n:10000
KS ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
TTC37   10000 perm   2 sec   (4538 perm/sec)   p_kst 5.017000e-01   p_cons 7.660000e-01   p_joint 7.069000e-01

Outputting figure to mutsig2_images.part000000000183/TTC37.6_4855_10000_0.5017_0.766_0.7069.png
                gene_name: TTC37
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 35 percent done.
TTC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
Cons ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
TTC24   10000 perm   2 sec   (6014 perm/sec)   p_kst 6.170000e-02   p_cons 7.662000e-01   p_joint 1.377000e-01

Joint ci ratio: 6.375951e-02	ci left: 1.538582e-01	ci right 1.640411e-01	k: 3178	n:20000
Cons ci ratio: 1.489031e-02	ci left: 7.702074e-01	ci right 7.818122e-01	k: 15521	n:20000
KS ci ratio: 1.098571e-01	ci left: 5.655298e-02	ci right 6.317570e-02	k: 1196	n:20000
TTC24   20000 perm   4 sec   (5389 perm/sec)   p_kst 5.980000e-02   p_cons 7.760500e-01   p_joint 1.589000e-01

Joint ci ratio: 6.032958e-02	ci left: 1.196324e-01	ci right 1.271074e-01	k: 3700	n:30000
Cons ci ratio: 1.241699e-02	ci left: 7.638188e-01	ci right 7.733958e-01	k: 23059	n:30000
KS ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
TTC24   30000 perm   6 sec   (5151 perm/sec)   p_kst 6.100000e-02   p_cons 7.686333e-01   p_joint 1.233333e-01

Outputting figure to mutsig2_images.part000000000183/TTC24.5_1789_30000_0.061_0.76863_0.12333.png
                gene_name: TTC24
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 37 percent done.
TTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
Cons ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
KS ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
TTC3   10000 perm   2 sec   (4308 perm/sec)   p_kst 5.366000e-01   p_cons 5.003000e-01   p_joint 8.365000e-01

Outputting figure to mutsig2_images.part000000000183/TTC3.5_6258_10000_0.5366_0.5003_0.8365.png
                gene_name: TTC3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 39 percent done.
TTC30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
Cons ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
TTC30A   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.946000e-01   p_cons 2.582000e-01   p_joint 7.277000e-01

Outputting figure to mutsig2_images.part000000000183/TTC30A.5_2002_10000_0.6946_0.2582_0.7277.png
                gene_name: TTC30A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 41 percent done.
TSPAN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
KS ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
TSPAN8   10000 perm   2 sec   (6263 perm/sec)   p_kst 8.361000e-01   p_cons 2.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPAN8.4_746_10000_0.8361_0.2424_1.png
                gene_name: TSPAN8
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
TSPYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
TSPYL2   10000 perm   2 sec   (5685 perm/sec)   p_kst 2.947000e-01   p_cons 9.502000e-01   p_joint 4.707000e-01

Outputting figure to mutsig2_images.part000000000183/TSPYL2.4_2110_10000_0.2947_0.9502_0.4707.png
                gene_name: TSPYL2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 44 percent done.
TSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
KS ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
TSR1   10000 perm   2 sec   (5518 perm/sec)   p_kst 8.524000e-01   p_cons 4.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSR1.4_2475_10000_0.8524_0.4972_1.png
                gene_name: TSR1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
TSSK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
Cons ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
KS ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
TSSK3   10000 perm   2 sec   (6259 perm/sec)   p_kst 4.953000e-01   p_cons 3.778000e-01   p_joint 6.785000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK3.4_815_10000_0.4953_0.3778_0.6785.png
                gene_name: TSSK3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 48 percent done.
TSTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
TSTD2   10000 perm   2 sec   (5699 perm/sec)   p_kst 5.469000e-01   p_cons 4.320000e-02   p_joint 2.037000e-01

Joint ci ratio: 6.943580e-02	ci left: 1.326567e-01	ci right 1.422490e-01	k: 2748	n:20000
Cons ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
KS ci ratio: 2.552994e-02	ci left: 5.340633e-01	ci right 5.479248e-01	k: 10820	n:20000
TSTD2   20000 perm   4 sec   (5135 perm/sec)   p_kst 5.410000e-01   p_cons 4.065000e-02   p_joint 1.374000e-01

Joint ci ratio: 6.563347e-02	ci left: 1.027681e-01	ci right 1.097750e-01	k: 3187	n:30000
Cons ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
KS ci ratio: 2.086377e-02	ci left: 5.349070e-01	ci right 5.462185e-01	k: 16217	n:30000
TSTD2   30000 perm   6 sec   (4915 perm/sec)   p_kst 5.405667e-01   p_cons 4.110000e-02   p_joint 1.062333e-01

Joint ci ratio: 5.315840e-02	ci left: 1.164846e-01	ci right 1.228707e-01	k: 4786	n:40000
Cons ci ratio: 9.601890e-02	ci left: 3.807617e-02	ci right 4.194097e-02	k: 1599	n:40000
KS ci ratio: 1.812126e-02	ci left: 5.342249e-01	ci right 5.440194e-01	k: 21565	n:40000
TSTD2   40000 perm   8 sec   (4753 perm/sec)   p_kst 5.391250e-01   p_cons 3.997500e-02   p_joint 1.196500e-01

Outputting figure to mutsig2_images.part000000000183/TSTD2.4_1587_40000_0.53912_0.039975_0.11965.png
                gene_name: TSTD2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 50 percent done.
TTC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
Cons ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
TTC23   10000 perm   2 sec   (5852 perm/sec)   p_kst 2.031000e-01   p_cons 8.037000e-01   p_joint 3.939000e-01

Outputting figure to mutsig2_images.part000000000183/TTC23.4_1384_10000_0.2031_0.8037_0.3939.png
                gene_name: TTC23
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 52 percent done.
TTC29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
Cons ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
TTC29   10000 perm   2 sec   (5901 perm/sec)   p_kst 1.514000e-01   p_cons 2.418000e-01   p_joint 2.218000e-01

Outputting figure to mutsig2_images.part000000000183/TTC29.4_1472_10000_0.1514_0.2418_0.2218.png
                gene_name: TTC29
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 54 percent done.
TSKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
TSKS   10000 perm   2 sec   (5873 perm/sec)   p_kst 8.663000e-01   p_cons 3.335000e-01   p_joint 7.666000e-01

Outputting figure to mutsig2_images.part000000000183/TSKS.3_1823_10000_0.8663_0.3335_0.7666.png
                gene_name: TSKS
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
TSLP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
Cons ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
TSLP   10000 perm   2 sec   (6530 perm/sec)   p_kst 5.160000e-02   p_cons 1.750000e-01   p_joint 1.176000e-01

Joint ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
Cons ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
KS ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
TSLP   20000 perm   3 sec   (5746 perm/sec)   p_kst 5.310000e-02   p_cons 1.628500e-01   p_joint 9.825000e-02

Joint ci ratio: 8.792804e-02	ci left: 5.939490e-02	ci right 6.489027e-02	k: 1863	n:30000
Cons ci ratio: 5.094924e-02	ci left: 1.605848e-01	ci right 1.690136e-01	k: 4943	n:30000
KS ci ratio: 9.509857e-02	ci left: 5.104544e-02	ci right 5.617477e-02	k: 1607	n:30000
TSLP   30000 perm   5 sec   (5455 perm/sec)   p_kst 5.356667e-02   p_cons 1.647667e-01   p_joint 6.210000e-02

Outputting figure to mutsig2_images.part000000000183/TSLP.3_496_30000_0.053567_0.16477_0.0621.png
                gene_name: TSLP
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 57 percent done.
TSNAXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
KS ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
TSNAXIP1   10000 perm   2 sec   (5743 perm/sec)   p_kst 6.149000e-01   p_cons 8.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSNAXIP1.3_2033_10000_0.6149_0.8696_1.png
                gene_name: TSNAXIP1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
TSPAN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
Cons ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
KS ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
TSPAN10   10000 perm   2 sec   (6369 perm/sec)   p_kst 3.431000e-01   p_cons 7.910000e-02   p_joint 3.008000e-01

Joint ci ratio: 5.078088e-02	ci left: 2.236868e-01	ci right 2.353920e-01	k: 4590	n:20000
Cons ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
KS ci ratio: 3.856769e-02	ci left: 3.339808e-01	ci right 3.471655e-01	k: 6811	n:20000
TSPAN10   20000 perm   4 sec   (5658 perm/sec)   p_kst 3.405500e-01   p_cons 7.785000e-02   p_joint 2.295000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN10.3_1080_20000_0.34055_0.07785_0.2295.png
                gene_name: TSPAN10
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 61 percent done.
TSPAN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
Cons ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
TSPAN12   10000 perm   2 sec   (6423 perm/sec)   p_kst 6.380000e-01   p_cons 8.480000e-02   p_joint 2.735000e-01

Joint ci ratio: 4.337625e-02	ci left: 2.836178e-01	ci right 2.962433e-01	k: 5798	n:20000
Cons ci ratio: 9.132389e-02	ci left: 8.048507e-02	ci right 8.823627e-02	k: 1686	n:20000
KS ci ratio: 2.074969e-02	ci left: 6.341560e-01	ci right 6.475030e-01	k: 12817	n:20000
TSPAN12   20000 perm   4 sec   (5586 perm/sec)   p_kst 6.408500e-01   p_cons 8.430000e-02   p_joint 2.899000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN12.3_946_20000_0.64085_0.0843_0.2899.png
                gene_name: TSPAN12
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 63 percent done.
TSPAN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
KS ci ratio: 1.712913e-02	ci left: 8.323605e-01	ci right 8.468411e-01	k: 8397	n:10000
TSPAN7   10000 perm   1 sec   (7113 perm/sec)   p_kst 8.397000e-01   p_cons 5.681000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPAN7.3_778_10000_0.8397_0.5681_1.png
                gene_name: TSPAN7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
TSPYL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
TSPYL5   10000 perm   2 sec   (6265 perm/sec)   p_kst 1.881000e-01   p_cons 2.680000e-02   p_joint 1.241000e-01

Joint ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
Cons ci ratio: 1.716948e-01	ci left: 2.321577e-02	ci right 2.762368e-02	k: 507	n:20000
KS ci ratio: 5.772848e-02	ci left: 1.819136e-01	ci right 1.927774e-01	k: 3746	n:20000
TSPYL5   20000 perm   4 sec   (5577 perm/sec)   p_kst 1.873000e-01   p_cons 2.535000e-02   p_joint 6.150000e-02

Joint ci ratio: 1.057021e-01	ci left: 4.151182e-02	ci right 4.617704e-02	k: 1314	n:30000
Cons ci ratio: 1.409503e-01	ci left: 2.335931e-02	ci right 2.693346e-02	k: 753	n:30000
KS ci ratio: 4.708636e-02	ci left: 1.832291e-01	ci right 1.920981e-01	k: 5629	n:30000
TSPYL5   30000 perm   6 sec   (5296 perm/sec)   p_kst 1.876333e-01   p_cons 2.510000e-02   p_joint 4.380000e-02

Joint ci ratio: 1.117856e-01	ci left: 2.815539e-02	ci right 3.151333e-02	k: 1192	n:40000
Cons ci ratio: 1.207390e-01	ci left: 2.412277e-02	ci right 2.724661e-02	k: 1026	n:40000
KS ci ratio: 4.090446e-02	ci left: 1.828916e-01	ci right 1.905539e-01	k: 7468	n:40000
TSPYL5   40000 perm   8 sec   (5102 perm/sec)   p_kst 1.867000e-01   p_cons 2.565000e-02   p_joint 2.980000e-02

Joint ci ratio: 9.586270e-02	ci left: 3.080662e-02	ci right 3.392798e-02	k: 1617	n:50000
Cons ci ratio: 1.084595e-01	ci left: 2.407746e-02	ci right 2.685801e-02	k: 1272	n:50000
KS ci ratio: 3.658912e-02	ci left: 1.832729e-01	ci right 1.901236e-01	k: 9334	n:50000
TSPYL5   50000 perm   10 sec   (4946 perm/sec)   p_kst 1.866800e-01   p_cons 2.544000e-02   p_joint 3.234000e-02

Joint ci ratio: 9.798121e-02	ci left: 2.470877e-02	ci right 2.727069e-02	k: 1558	n:60000
Cons ci ratio: 9.896315e-02	ci left: 2.422079e-02	ci right 2.675873e-02	k: 1528	n:60000
KS ci ratio: 3.339384e-02	ci left: 1.836386e-01	ci right 1.898917e-01	k: 11205	n:60000
TSPYL5   60000 perm   12 sec   (4820 perm/sec)   p_kst 1.867500e-01   p_cons 2.546667e-02   p_joint 2.596667e-02

Outputting figure to mutsig2_images.part000000000183/TSPYL5.3_1258_60000_0.18675_0.025467_0.025967.png
                gene_name: TSPYL5
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 67 percent done.
TSSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
Cons ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
KS ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
TSSC1   10000 perm   2 sec   (6352 perm/sec)   p_kst 6.978000e-01   p_cons 1.520000e-01   p_joint 5.106000e-01

Outputting figure to mutsig2_images.part000000000183/TSSC1.3_1200_10000_0.6978_0.152_0.5106.png
                gene_name: TSSC1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 69 percent done.
TTC33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
TTC33   10000 perm   2 sec   (6269 perm/sec)   p_kst 1.010000e-01   p_cons 2.174000e-01   p_joint 1.838000e-01

Joint ci ratio: 5.931176e-02	ci left: 1.739067e-01	ci right 1.845867e-01	k: 3584	n:20000
Cons ci ratio: 5.297197e-02	ci left: 2.092241e-01	ci right 2.206589e-01	k: 4298	n:20000
KS ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
TTC33   20000 perm   4 sec   (5575 perm/sec)   p_kst 1.005500e-01   p_cons 2.149000e-01   p_joint 1.792000e-01

Outputting figure to mutsig2_images.part000000000183/TTC33.3_805_20000_0.10055_0.2149_0.1792.png
                gene_name: TTC33
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 70 percent done.
TTC39C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
KS ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
TTC39C   10000 perm   2 sec   (6136 perm/sec)   p_kst 5.118000e-01   p_cons 1.772000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000183/TTC39C.3_1808_10000_0.5118_0.1772_0.4849.png
                gene_name: TTC39C
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 72 percent done.
TTC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
TTC5   10000 perm   2 sec   (6225 perm/sec)   p_kst 7.616000e-01   p_cons 4.759000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000183/TTC5.3_1363_10000_0.7616_0.4759_0.7781.png
                gene_name: TTC5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 74 percent done.
TSKU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
KS ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
TSKU   10000 perm   1 sec   (6756 perm/sec)   p_kst 9.613000e-01   p_cons 9.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSKU.2_1066_10000_0.9613_0.9038_1.png
                gene_name: TSKU
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TSNAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.615328e-02	ci left: 5.304715e-01	ci right 5.501050e-01	k: 5403	n:10000
KS ci ratio: 3.686500e-02	ci left: 5.207608e-01	ci right 5.404213e-01	k: 5306	n:10000
TSNAX   10000 perm   1 sec   (6810 perm/sec)   p_kst 5.306000e-01   p_cons 5.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSNAX.2_897_10000_0.5306_0.5403_1.png
                gene_name: TSNAX
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
TSPAN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
Cons ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
KS ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
TSPAN11   10000 perm   1 sec   (6976 perm/sec)   p_kst 2.158000e-01   p_cons 4.552000e-01   p_joint 2.331000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN11.2_790_10000_0.2158_0.4552_0.2331.png
                gene_name: TSPAN11
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 80 percent done.
TSPAN16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.164863e-03	ci left: 9.544052e-01	ci right 9.623250e-01	k: 9585	n:10000
Cons ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
KS ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
TSPAN16   10000 perm   1 sec   (6914 perm/sec)   p_kst 3.690000e-01   p_cons 8.522000e-01   p_joint 9.585000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN16.2_766_10000_0.369_0.8522_0.9585.png
                gene_name: TSPAN16
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 81 percent done.
TSPAN19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
Cons ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
KS ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
TSPAN19   10000 perm   1 sec   (7074 perm/sec)   p_kst 3.662000e-01   p_cons 1.650000e-01   p_joint 4.124000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN19.2_779_10000_0.3662_0.165_0.4124.png
                gene_name: TSPAN19
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 83 percent done.
TSPAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
Cons ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
TSPAN2   10000 perm   1 sec   (7108 perm/sec)   p_kst 4.863000e-01   p_cons 9.210000e-01   p_joint 5.797000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN2.2_698_10000_0.4863_0.921_0.5797.png
                gene_name: TSPAN2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 85 percent done.
TSPAN31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
Cons ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
KS ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
TSPAN31   10000 perm   1 sec   (7147 perm/sec)   p_kst 1.236000e-01   p_cons 6.784000e-01   p_joint 8.662000e-01

Joint ci ratio: 1.111247e-02	ci left: 8.566859e-01	ci right 8.663087e-01	k: 17231	n:20000
Cons ci ratio: 1.898358e-02	ci left: 6.741879e-01	ci right 6.871595e-01	k: 13614	n:20000
KS ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
TSPAN31   20000 perm   3 sec   (6249 perm/sec)   p_kst 1.222000e-01   p_cons 6.807000e-01   p_joint 8.615500e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN31.2_657_20000_0.1222_0.6807_0.86155.png
                gene_name: TSPAN31
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 87 percent done.
TSPAN33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
Cons ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
KS ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
TSPAN33   10000 perm   1 sec   (6687 perm/sec)   p_kst 8.382000e-01   p_cons 3.757000e-01   p_joint 8.902000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN33.2_884_10000_0.8382_0.3757_0.8902.png
                gene_name: TSPAN33
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 89 percent done.
TSPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
TSPO2   10000 perm   1 sec   (6974 perm/sec)   p_kst 9.539000e-01   p_cons 8.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPO2.2_525_10000_0.9539_0.8413_1.png
                gene_name: TSPO2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TTC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
KS ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
TTC22   10000 perm   2 sec   (6272 perm/sec)   p_kst 3.838000e-01   p_cons 2.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TTC22.2_1841_10000_0.3838_0.2224_1.png
                gene_name: TTC22
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
TTC30B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
Cons ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
KS ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
TTC30B   10000 perm   2 sec   (6154 perm/sec)   p_kst 4.455000e-01   p_cons 4.626000e-01   p_joint 6.400000e-01

Outputting figure to mutsig2_images.part000000000183/TTC30B.2_2002_10000_0.4455_0.4626_0.64.png
                gene_name: TTC30B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 94 percent done.
TTC31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
KS ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
TTC31   10000 perm   2 sec   (6417 perm/sec)   p_kst 5.841000e-01   p_cons 8.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TTC31.2_1612_10000_0.5841_0.8044_1.png
                gene_name: TTC31
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
TTC38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.615380e-03	ci left: 9.497099e-01	ci right 9.580231e-01	k: 9540	n:10000
Cons ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
TTC38   10000 perm   2 sec   (5762 perm/sec)   p_kst 8.385000e-01   p_cons 8.569000e-01   p_joint 9.540000e-01

Outputting figure to mutsig2_images.part000000000183/TTC38.2_1466_10000_0.8385_0.8569_0.954.png
                gene_name: TTC38
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 98 percent done.
TTC39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
KS ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
TTC39B   10000 perm   2 sec   (5484 perm/sec)   p_kst 2.080000e-02   p_cons 1.215000e-01   p_joint 1.230000e-02

Joint ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
Cons ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
KS ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
TTC39B   20000 perm   4 sec   (5053 perm/sec)   p_kst 2.010000e-02   p_cons 1.214500e-01   p_joint 2.240000e-02

Joint ci ratio: 4.070923e-02	ci left: 2.312703e-01	ci right 2.409142e-01	k: 7082	n:30000
Cons ci ratio: 6.082745e-02	ci left: 1.178889e-01	ci right 1.253179e-01	k: 3647	n:30000
KS ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
TTC39B   30000 perm   6 sec   (4873 perm/sec)   p_kst 2.066667e-02   p_cons 1.215667e-01   p_joint 2.360667e-01

Joint ci ratio: 3.054926e-02	ci left: 2.871239e-01	ci right 2.960564e-01	k: 11663	n:40000
Cons ci ratio: 5.229346e-02	ci left: 1.199446e-01	ci right 1.264102e-01	k: 4926	n:40000
KS ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
TTC39B   40000 perm   8 sec   (4760 perm/sec)   p_kst 2.075000e-02   p_cons 1.231500e-01   p_joint 2.915750e-01

Joint ci ratio: 2.218783e-02	ci left: 3.800531e-01	ci right 3.886003e-01	k: 19216	n:50000
Cons ci ratio: 4.655214e-02	ci left: 1.213012e-01	ci right 1.271025e-01	k: 6209	n:50000
KS ci ratio: 1.202231e-01	ci left: 1.956696e-02	ci right 2.208911e-02	k: 1040	n:50000
TTC39B   50000 perm   11 sec   (4666 perm/sec)   p_kst 2.080000e-02   p_cons 1.241800e-01   p_joint 3.843200e-01

Joint ci ratio: 2.489116e-02	ci left: 2.888120e-01	ci right 2.961081e-01	k: 17547	n:60000
Cons ci ratio: 4.245387e-02	ci left: 1.217691e-01	ci right 1.270673e-01	k: 7464	n:60000
KS ci ratio: 1.099372e-01	ci left: 1.960809e-02	ci right 2.190526e-02	k: 1244	n:60000
TTC39B   60000 perm   13 sec   (4576 perm/sec)   p_kst 2.073333e-02   p_cons 1.244000e-01   p_joint 2.924500e-01

Joint ci ratio: 1.899314e-02	ci left: 3.747054e-01	ci right 3.819047e-01	k: 26481	n:70000
Cons ci ratio: 3.941632e-02	ci left: 1.213545e-01	ci right 1.262482e-01	k: 8665	n:70000
KS ci ratio: 1.019436e-01	ci left: 1.963017e-02	ci right 2.175268e-02	k: 1447	n:70000
TTC39B   70000 perm   16 sec   (4499 perm/sec)   p_kst 2.067143e-02   p_cons 1.237857e-01   p_joint 3.783000e-01

Joint ci ratio: 1.756521e-02	ci left: 3.803033e-01	ci right 3.870551e-01	k: 30694	n:80000
Cons ci ratio: 3.686212e-02	ci left: 1.215624e-01	ci right 1.261400e-01	k: 9907	n:80000
KS ci ratio: 9.597901e-02	ci left: 1.944379e-02	ci right 2.141620e-02	k: 1633	n:80000
TTC39B   80000 perm   18 sec   (4423 perm/sec)   p_kst 2.041250e-02   p_cons 1.238375e-01   p_joint 3.836750e-01

Outputting figure to mutsig2_images.part000000000183/TTC39B.2_2150_80000_0.020413_0.12384_0.38367.png
                gene_name: TTC39B
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000183
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 183 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 4422658: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000184> was used as the working directory.
Started at Wed Oct 24 18:10:21 2012
Results reported at Wed Oct 24 18:36:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000184.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000184.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 184  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000184.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1667.24 sec.
    Max Memory :      5286 MB
    Max Swap   :      7847 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
184
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 184
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 184: processing genes 16557 - 16646
Calculating significance of each gene.
Using projection method.
16557	TTC7A	4.047320e-01
16558	TTC7B	9.733777e-01
16559	TTC8	4.669322e-01
16560	TTC9	1
16561	TTC9B	7.253397e-01
16562	TTC9C	6.452354e-01
16563	TTF1	3.223435e-01
16564	TTF2	3.546637e-01
16565	TTK	1.336701e-03
16566	TTL	1
16567	TTLL1	5.879450e-01
16568	TTLL10	5.306738e-01
16569	TTLL11	3.178365e-01
16570	TTLL12	7.995069e-01
16571	TTLL13	1
16572	TTLL2	9.084648e-01
16573	TTLL3	9.294911e-01
16574	TTLL4	9.706545e-01
16575	TTLL5	2.284424e-01
16576	TTLL6	8.539236e-01
16577	TTLL7	2.752262e-01
16578	TTLL8	9.782540e-01
16579	TTLL9	8.313084e-01
16580	TTN	1
16581	TTPA	2.229470e-01
16582	TTPAL	1
16583	TTR	4.822583e-01
16584	TTYH1	6.207704e-01
16585	TTYH2	8.506992e-01
16586	TTYH3	8.520214e-01
16587	TUB	7.903006e-01
16588	TUBA1A	6.488925e-01
16589	TUBA1B	9.065640e-01
16590	TUBA1C	5.701780e-01
16591	TUBA3C	4.537568e-04
16592	TUBA3D	9.020568e-01
16593	TUBA3E	1
16594	TUBA4A	4.973869e-01
16595	TUBA8	9.073409e-01
16596	TUBAL3	1
16597	TUBB	1
16598	TUBB1	8.911407e-01
16599	TUBB2A	6.062390e-01
16600	TUBB2B	7.968140e-01
16601	TUBB2C	7.701840e-01
16602	TUBB3	1
16603	TUBB4	1
16604	TUBB4Q	3.245788e-04
16605	TUBB6	1
16606	TUBB8	8.317409e-01
16607	TUBD1	2.968962e-01
16608	TUBE1	1
16609	TUBG1	7.690609e-01
16610	TUBG2	8.671448e-01
16611	TUBGCP2	9.909029e-01
16612	TUBGCP3	8.823364e-01
16613	TUBGCP4	1
In gene TUBGCP5 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 3075    n = 1	mu =   5.69e-07
16614	TUBGCP5	9.827588e-01
16615	TUBGCP6	9.436578e-01
16616	TUFM	6.063075e-01
16617	TUFT1	8.348389e-01
16618	TULP1	1
16619	TULP2	9.321285e-01
16620	TULP3	1
16621	TULP4	9.836710e-01
16622	TUSC2	1
16623	TUSC3	2.377635e-02
16624	TUSC5	1
16625	TUT1	9.690671e-01
16626	TWF1	1
16627	TWF2	7.082302e-01
16628	TWIST1	3.790134e-01
16629	TWISTNB	2.517313e-03
16630	TWSG1	6.229482e-01
16631	TXK	2.621340e-01
16632	TXLNA	1
16633	TXLNB	1.202058e-01
16634	TXLNG	9.322244e-01
16635	TXN	1
16636	TXN2	1
16637	TXNDC11	7.174670e-01
16638	TXNDC12	5.150864e-01
16639	TXNDC15	3.939450e-01
16640	TXNDC16	8.232788e-01
16641	TXNDC17	1
16642	TXNDC2	3.661862e-01
16643	TXNDC3	1.132789e-01
16644	TXNDC5	5.300722e-01
16645	TXNDC6	7.097784e-01
16646	TXNDC8	1
Done

Running MutSig 2:
Scatter job 184: processing genes 16557 - 16646
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TTN
Processing conservation and coverage...
8% 17% 26% 35% 44% 53% 62% 71% 80% 89% 98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
Cons ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
KS ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
TTN   10000 perm   45 sec   (221 perm/sec)   p_kst 1.884000e-01   p_cons 4.941000e-01   p_joint 2.707000e-01

Outputting figure to mutsig2_images.part000000000184/TTN.375_111433_10000_0.1884_0.4941_0.2707.png
                gene_name: TTN
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 2 percent done.
TTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
Cons ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
KS ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
TTF2   10000 perm   2 sec   (4416 perm/sec)   p_kst 3.046000e-01   p_cons 7.800000e-03   p_joint 5.070000e-02

Joint ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
Cons ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
KS ci ratio: 4.206011e-02	ci left: 2.963865e-01	ci right 3.091708e-01	k: 6055	n:20000
TTF2   20000 perm   5 sec   (4059 perm/sec)   p_kst 3.027500e-01   p_cons 6.750000e-03   p_joint 9.535000e-02

Joint ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
Cons ci ratio: 2.657559e-01	ci left: 6.243453e-03	ci right 8.187151e-03	k: 215	n:30000
KS ci ratio: 3.426891e-02	ci left: 2.984657e-01	ci right 3.089057e-01	k: 9110	n:30000
TTF2   30000 perm   8 sec   (3909 perm/sec)   p_kst 3.036667e-01   p_cons 7.166667e-03   p_joint 6.753333e-02

Joint ci ratio: 1.068114e-01	ci left: 3.083247e-02	ci right 3.433582e-02	k: 1302	n:40000
Cons ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
KS ci ratio: 2.918007e-02	ci left: 3.063405e-01	ci right 3.154370e-01	k: 12435	n:40000
TTF2   40000 perm   10 sec   (3812 perm/sec)   p_kst 3.108750e-01   p_cons 7.025000e-03   p_joint 3.255000e-02

Joint ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
Cons ci ratio: 2.058550e-01	ci left: 6.458676e-03	ci right 7.959392e-03	k: 359	n:50000
KS ci ratio: 2.615437e-02	ci left: 3.059273e-01	ci right 3.140547e-01	k: 15499	n:50000
TTF2   50000 perm   13 sec   (3727 perm/sec)   p_kst 3.099800e-01   p_cons 7.180000e-03   p_joint 2.870000e-02

Joint ci ratio: 1.055610e-01	ci left: 2.127945e-02	ci right 2.366705e-02	k: 1347	n:60000
Cons ci ratio: 1.908331e-01	ci left: 6.316740e-03	ci right 7.664943e-03	k: 418	n:60000
KS ci ratio: 2.386813e-02	ci left: 3.064166e-01	ci right 3.138352e-01	k: 18607	n:60000
TTF2   60000 perm   16 sec   (3655 perm/sec)   p_kst 3.101167e-01   p_cons 6.966667e-03   p_joint 2.245000e-02

Joint ci ratio: 8.414474e-02	ci left: 2.880464e-02	ci right 3.134880e-02	k: 2104	n:70000
Cons ci ratio: 1.641012e-01	ci left: 7.421892e-03	ci right 8.762223e-03	k: 565	n:70000
KS ci ratio: 2.209563e-02	ci left: 3.067313e-01	ci right 3.135987e-01	k: 21711	n:70000
TTF2   70000 perm   20 sec   (3588 perm/sec)   p_kst 3.101571e-01   p_cons 8.071429e-03   p_joint 3.005714e-02

Joint ci ratio: 9.240523e-02	ci left: 2.098245e-02	ci right 2.302742e-02	k: 1759	n:80000
Cons ci ratio: 1.667255e-01	ci left: 6.290140e-03	ci right 7.446058e-03	k: 548	n:80000
KS ci ratio: 2.071559e-02	ci left: 3.059857e-01	ci right 3.124032e-01	k: 24735	n:80000
TTF2   80000 perm   23 sec   (3524 perm/sec)   p_kst 3.091875e-01   p_cons 6.850000e-03   p_joint 2.198750e-02

Joint ci ratio: 8.233570e-02	ci left: 2.355423e-02	ci right 2.558769e-02	k: 2210	n:90000
Cons ci ratio: 1.588332e-01	ci left: 6.188093e-03	ci right 7.266292e-03	k: 604	n:90000
KS ci ratio: 1.953491e-02	ci left: 3.060815e-01	ci right 3.121308e-01	k: 27819	n:90000
TTF2   90000 perm   26 sec   (3466 perm/sec)   p_kst 3.091000e-01   p_cons 6.711111e-03   p_joint 2.455556e-02

Joint ci ratio: 8.635486e-02	ci left: 1.931741e-02	ci right 2.107058e-02	k: 2018	n:100000
Cons ci ratio: 1.509339e-01	ci left: 6.194104e-03	ci right 7.214825e-03	k: 669	n:100000
KS ci ratio: 1.850735e-02	ci left: 3.068149e-01	ci right 3.125562e-01	k: 30968	n:100000
TTF2   100000 perm   29 sec   (3412 perm/sec)   p_kst 3.096800e-01   p_cons 6.690000e-03   p_joint 2.018000e-02

Joint ci ratio: 8.308184e-02	ci left: 1.901158e-02	ci right 2.066842e-02	k: 2181	n:110000
Cons ci ratio: 1.447026e-01	ci left: 6.147523e-03	ci right 7.115129e-03	k: 728	n:110000
KS ci ratio: 1.764753e-02	ci left: 3.069137e-01	ci right 3.123872e-01	k: 34061	n:110000
TTF2   110000 perm   33 sec   (3365 perm/sec)   p_kst 3.096455e-01   p_cons 6.618182e-03   p_joint 1.982727e-02

Joint ci ratio: 7.813918e-02	ci left: 1.973839e-02	ci right 2.135157e-02	k: 2464	n:120000
Cons ci ratio: 1.391844e-01	ci left: 6.109430e-03	ci right 7.031326e-03	k: 787	n:120000
KS ci ratio: 1.699772e-02	ci left: 3.044823e-01	ci right 3.097104e-01	k: 36851	n:120000
TTF2   120000 perm   36 sec   (3323 perm/sec)   p_kst 3.070917e-01   p_cons 6.558333e-03   p_joint 2.053333e-02

Joint ci ratio: 7.869173e-02	ci left: 1.799316e-02	ci right 1.947457e-02	k: 2434	n:130000
Cons ci ratio: 1.333837e-01	ci left: 6.159591e-03	ci right 7.047248e-03	k: 857	n:130000
KS ci ratio: 1.634476e-02	ci left: 3.042245e-01	ci right 3.092456e-01	k: 39875	n:130000
TTF2   130000 perm   40 sec   (3283 perm/sec)   p_kst 3.067308e-01   p_cons 6.592308e-03   p_joint 1.872308e-02

Joint ci ratio: 6.564795e-02	ci left: 2.401977e-02	ci right 2.565713e-02	k: 3476	n:140000
Cons ci ratio: 1.342046e-01	ci left: 5.650482e-03	ci right 6.470178e-03	k: 847	n:140000
KS ci ratio: 1.575190e-02	ci left: 3.042707e-01	ci right 3.091087e-01	k: 42936	n:140000
TTF2   140000 perm   43 sec   (3245 perm/sec)   p_kst 3.066857e-01   p_cons 6.050000e-03   p_joint 2.482857e-02

Joint ci ratio: 6.700744e-02	ci left: 2.155867e-02	ci right 2.305987e-02	k: 3345	n:150000
Cons ci ratio: 1.299111e-01	ci left: 5.641229e-03	ci right 6.431382e-03	k: 904	n:150000
KS ci ratio: 1.524404e-02	ci left: 3.036218e-01	ci right 3.082924e-01	k: 45893	n:150000
TTF2   150000 perm   47 sec   (3209 perm/sec)   p_kst 3.059533e-01   p_cons 6.026667e-03   p_joint 2.230000e-02

Joint ci ratio: 6.634979e-02	ci left: 2.064114e-02	ci right 2.206378e-02	k: 3415	n:160000
Cons ci ratio: 1.258078e-01	ci left: 5.651660e-03	ci right 6.416405e-03	k: 964	n:160000
KS ci ratio: 1.474145e-02	ci left: 3.042289e-01	ci right 3.087531e-01	k: 49038	n:160000
TTF2   160000 perm   50 sec   (3172 perm/sec)   p_kst 3.064875e-01   p_cons 6.025000e-03   p_joint 2.134375e-02

Joint ci ratio: 6.963446e-02	ci left: 1.766236e-02	ci right 1.894238e-02	k: 3110	n:170000
Cons ci ratio: 1.221902e-01	ci left: 5.649804e-03	ci right 6.390724e-03	k: 1022	n:170000
KS ci ratio: 1.429457e-02	ci left: 3.044966e-01	ci right 3.088864e-01	k: 52137	n:170000
TTF2   170000 perm   54 sec   (3136 perm/sec)   p_kst 3.066882e-01   p_cons 6.011765e-03   p_joint 1.829412e-02

Joint ci ratio: 6.145312e-02	ci left: 2.142579e-02	ci right 2.278966e-02	k: 3978	n:180000
Cons ci ratio: 1.181551e-01	ci left: 5.718526e-03	ci right 6.441965e-03	k: 1093	n:180000
KS ci ratio: 1.389999e-02	ci left: 3.043095e-01	ci right 3.085745e-01	k: 55159	n:180000
TTF2   180000 perm   58 sec   (3100 perm/sec)   p_kst 3.064389e-01   p_cons 6.072222e-03   p_joint 2.210000e-02

Joint ci ratio: 6.501566e-02	ci left: 1.816294e-02	ci right 1.938865e-02	k: 3566	n:190000
Cons ci ratio: 1.149926e-01	ci left: 5.729245e-03	ci right 6.433322e-03	k: 1154	n:190000
KS ci ratio: 1.353151e-02	ci left: 3.042960e-01	ci right 3.084468e-01	k: 58210	n:190000
TTF2   190000 perm   62 sec   (3054 perm/sec)   p_kst 3.063684e-01   p_cons 6.073684e-03   p_joint 1.876842e-02

Joint ci ratio: 6.435223e-02	ci left: 1.762849e-02	ci right 1.880553e-02	k: 3642	n:200000
Cons ci ratio: 1.112004e-01	ci left: 5.831485e-03	ci right 6.522945e-03	k: 1234	n:200000
KS ci ratio: 1.318419e-02	ci left: 3.044997e-01	ci right 3.085459e-01	k: 61304	n:200000
TTF2   200000 perm   66 sec   (3022 perm/sec)   p_kst 3.065200e-01   p_cons 6.170000e-03   p_joint 1.821000e-02

Joint ci ratio: 6.306340e-02	ci left: 1.749659e-02	ci right 1.864057e-02	k: 3793	n:210000
Cons ci ratio: 1.090186e-01	ci left: 5.785326e-03	ci right 6.456988e-03	k: 1284	n:210000
KS ci ratio: 1.286908e-02	ci left: 3.044619e-01	ci right 3.084101e-01	k: 64351	n:210000
TTF2   210000 perm   70 sec   (2990 perm/sec)   p_kst 3.064333e-01   p_cons 6.114286e-03   p_joint 1.806190e-02

Joint ci ratio: 6.320855e-02	ci left: 1.663843e-02	ci right 1.772889e-02	k: 3779	n:220000
Cons ci ratio: 1.062421e-01	ci left: 5.823133e-03	ci right 6.480890e-03	k: 1352	n:220000
KS ci ratio: 1.257043e-02	ci left: 3.046010e-01	ci right 3.084587e-01	k: 67436	n:220000
TTF2   220000 perm   74 sec   (2958 perm/sec)   p_kst 3.065273e-01   p_cons 6.145455e-03   p_joint 1.717727e-02

Joint ci ratio: 6.030600e-02	ci left: 1.749483e-02	ci right 1.858693e-02	k: 4148	n:230000
Cons ci ratio: 1.034479e-01	ci left: 5.883265e-03	ci right 6.529274e-03	k: 1426	n:230000
KS ci ratio: 1.230070e-02	ci left: 3.044164e-01	ci right 3.081884e-01	k: 70449	n:230000
TTF2   230000 perm   79 sec   (2924 perm/sec)   p_kst 3.063000e-01   p_cons 6.200000e-03   p_joint 1.803478e-02

Joint ci ratio: 6.023313e-02	ci left: 1.681905e-02	ci right 1.786765e-02	k: 4161	n:240000
Cons ci ratio: 1.008631e-01	ci left: 5.938593e-03	ci right 6.573419e-03	k: 1500	n:240000
KS ci ratio: 1.203641e-02	ci left: 3.046433e-01	ci right 3.083364e-01	k: 73557	n:240000
TTF2   240000 perm   83 sec   (2893 perm/sec)   p_kst 3.064875e-01   p_cons 6.250000e-03   p_joint 1.733750e-02

Joint ci ratio: 5.735828e-02	ci left: 1.781368e-02	ci right 1.886953e-02	k: 4584	n:250000
Cons ci ratio: 9.836865e-02	ci left: 6.001386e-03	ci right 6.626143e-03	k: 1577	n:250000
KS ci ratio: 1.179388e-02	ci left: 3.046571e-01	ci right 3.082754e-01	k: 76616	n:250000
TTF2   250000 perm   87 sec   (2863 perm/sec)   p_kst 3.064640e-01   p_cons 6.308000e-03   p_joint 1.833600e-02

Outputting figure to mutsig2_images.part000000000184/TTF2.17_3581_250000_0.30646_0.006308_0.018336.png
                gene_name: TTF2
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 4 percent done.
TTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
Cons ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
KS ci ratio: 2.866778e-02	ci left: 6.420678e-01	ci right 6.608439e-01	k: 6515	n:10000
TTK   10000 perm   2 sec   (4471 perm/sec)   p_kst 6.515000e-01   p_cons 1.598000e-01   p_joint 4.606000e-01

Outputting figure to mutsig2_images.part000000000184/TTK.13_2658_10000_0.6515_0.1598_0.4606.png
                gene_name: TTK
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 5 percent done.
TTLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
Cons ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
KS ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
TTLL5   10000 perm   2 sec   (4310 perm/sec)   p_kst 4.747000e-01   p_cons 2.224000e-01   p_joint 4.078000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL5.12_3970_10000_0.4747_0.2224_0.4078.png
                gene_name: TTLL5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 7 percent done.
TUBA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092186e-02	ci left: 7.700281e-01	ci right 7.864095e-01	k: 7783	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
TUBA3C   10000 perm   2 sec   (5267 perm/sec)   p_kst 8.373000e-01   p_cons 3.510000e-01   p_joint 7.783000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3C.12_1373_10000_0.8373_0.351_0.7783.png
                gene_name: TUBA3C
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 9 percent done.
TUBB4Q
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
Cons ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
TUBB4Q   10000 perm   2 sec   (5607 perm/sec)   p_kst 4.837000e-01   p_cons 1.449000e-01   p_joint 3.224000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB4Q.12_1318_10000_0.4837_0.1449_0.3224.png
                gene_name: TUBB4Q
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 11 percent done.
TTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
TTF1   10000 perm   2 sec   (5194 perm/sec)   p_kst 6.681000e-01   p_cons 5.360000e-02   p_joint 2.297000e-01

Joint ci ratio: 8.224334e-02	ci left: 9.778957e-02	ci right 1.062265e-01	k: 2039	n:20000
Cons ci ratio: 1.237119e-01	ci left: 4.483567e-02	ci right 5.079668e-02	k: 955	n:20000
KS ci ratio: 1.954491e-02	ci left: 6.613238e-01	ci right 6.744274e-01	k: 13358	n:20000
TTF1   20000 perm   4 sec   (4697 perm/sec)   p_kst 6.679000e-01   p_cons 4.775000e-02   p_joint 1.019500e-01

Joint ci ratio: 5.569237e-02	ci left: 1.377718e-01	ci right 1.456977e-01	k: 4251	n:30000
Cons ci ratio: 1.011965e-01	ci left: 4.521789e-02	ci right 5.007020e-02	k: 1428	n:30000
KS ci ratio: 1.598853e-02	ci left: 6.617013e-01	ci right 6.723997e-01	k: 20012	n:30000
TTF1   30000 perm   7 sec   (4495 perm/sec)   p_kst 6.670667e-01   p_cons 4.760000e-02   p_joint 1.417000e-01

Joint ci ratio: 5.261672e-02	ci left: 1.186347e-01	ci right 1.250703e-01	k: 4873	n:40000
Cons ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
KS ci ratio: 1.383929e-02	ci left: 6.626580e-01	ci right 6.719177e-01	k: 26692	n:40000
TTF1   40000 perm   9 sec   (4362 perm/sec)   p_kst 6.673000e-01   p_cons 4.775000e-02   p_joint 1.218250e-01

Outputting figure to mutsig2_images.part000000000184/TTF1.9_2758_40000_0.6673_0.04775_0.12183.png
                gene_name: TTF1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 13 percent done.
TTLL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
TTLL7   10000 perm   2 sec   (4894 perm/sec)   p_kst 2.810000e-02   p_cons 2.300000e-03   p_joint 1.120000e-02

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
KS ci ratio: 1.612488e-01	ci left: 2.638175e-02	ci right 3.105661e-02	k: 573	n:20000
TTLL7   20000 perm   4 sec   (4461 perm/sec)   p_kst 2.865000e-02   p_cons 2.350000e-03   p_joint 6.600000e-03

Joint ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
Cons ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
KS ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
TTLL7   30000 perm   7 sec   (4284 perm/sec)   p_kst 2.823333e-02   p_cons 2.366667e-03   p_joint 4.666667e-03

Joint ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
Cons ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
KS ci ratio: 1.203786e-01	ci left: 2.426835e-02	ci right 2.740100e-02	k: 1032	n:40000
TTLL7   40000 perm   10 sec   (4169 perm/sec)   p_kst 2.580000e-02   p_cons 2.625000e-03   p_joint 3.175000e-03

Joint ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 1.085470e-01	ci left: 2.403851e-02	ci right 2.681696e-02	k: 1270	n:50000
TTLL7   50000 perm   12 sec   (4087 perm/sec)   p_kst 2.540000e-02   p_cons 3.100000e-03   p_joint 1.760000e-03

Joint ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
Cons ci ratio: 2.885404e-01	ci left: 2.624630e-03	ci right 3.524501e-03	k: 183	n:60000
KS ci ratio: 9.794896e-02	ci left: 2.472504e-02	ci right 2.728775e-02	k: 1559	n:60000
TTLL7   60000 perm   15 sec   (4010 perm/sec)   p_kst 2.598333e-02   p_cons 3.050000e-03   p_joint 1.566667e-03

Joint ci ratio: 3.652389e-01	ci left: 1.343553e-03	ci right 1.956091e-03	k: 114	n:70000
Cons ci ratio: 2.707451e-01	ci left: 2.581796e-03	ci right 3.403118e-03	k: 208	n:70000
KS ci ratio: 9.045386e-02	ci left: 2.494543e-02	ci right 2.732264e-02	k: 1828	n:70000
TTLL7   70000 perm   18 sec   (3935 perm/sec)   p_kst 2.611429e-02   p_cons 2.971429e-03   p_joint 1.628571e-03

Joint ci ratio: 3.701435e-01	ci left: 1.141550e-03	ci right 1.670671e-03	k: 111	n:80000
Cons ci ratio: 2.564319e-01	ci left: 2.539254e-03	ci right 3.297507e-03	k: 232	n:80000
KS ci ratio: 8.197744e-02	ci left: 2.664719e-02	ci right 2.893723e-02	k: 2222	n:80000
TTLL7   80000 perm   21 sec   (3871 perm/sec)   p_kst 2.777500e-02   p_cons 2.900000e-03   p_joint 1.387500e-03

Joint ci ratio: 3.621665e-01	ci left: 1.065147e-03	ci right 1.545701e-03	k: 116	n:90000
Cons ci ratio: 2.446500e-01	ci left: 2.496624e-03	ci right 3.202691e-03	k: 255	n:90000
KS ci ratio: 7.770357e-02	ci left: 2.643038e-02	ci right 2.857799e-02	k: 2474	n:90000
TTLL7   90000 perm   24 sec   (3812 perm/sec)   p_kst 2.748889e-02   p_cons 2.833333e-03   p_joint 1.288889e-03

Joint ci ratio: 3.591301e-01	ci left: 9.768116e-04	ci right 1.412951e-03	k: 118	n:100000
Cons ci ratio: 2.331021e-01	ci left: 2.491407e-03	ci right 3.157950e-03	k: 281	n:100000
KS ci ratio: 7.355127e-02	ci left: 2.660317e-02	ci right 2.864435e-02	k: 2761	n:100000
TTLL7   100000 perm   27 sec   (3754 perm/sec)   p_kst 2.761000e-02   p_cons 2.810000e-03   p_joint 1.180000e-03

Joint ci ratio: 2.144883e-01	ci left: 2.702634e-03	ci right 3.360365e-03	k: 332	n:110000
Cons ci ratio: 2.101035e-01	ci left: 2.823159e-03	ci right 3.494369e-03	k: 346	n:110000
KS ci ratio: 7.040535e-02	ci left: 2.644323e-02	ci right 2.838180e-02	k: 3014	n:110000
TTLL7   110000 perm   30 sec   (3699 perm/sec)   p_kst 2.740000e-02   p_cons 3.145455e-03   p_joint 3.018182e-03

Joint ci ratio: 2.260373e-01	ci left: 2.217511e-03	ci right 2.790287e-03	k: 299	n:120000
Cons ci ratio: 2.007723e-01	ci left: 2.848758e-03	ci right 3.492289e-03	k: 379	n:120000
KS ci ratio: 6.720963e-02	ci left: 2.663937e-02	ci right 2.850022e-02	k: 3307	n:120000
TTLL7   120000 perm   33 sec   (3648 perm/sec)   p_kst 2.755833e-02   p_cons 3.158333e-03   p_joint 2.491667e-03

Joint ci ratio: 2.168355e-01	ci left: 2.235847e-03	ci right 2.786719e-03	k: 325	n:130000
Cons ci ratio: 1.921171e-01	ci left: 2.885622e-03	ci right 3.506097e-03	k: 414	n:130000
KS ci ratio: 6.461622e-02	ci left: 2.664045e-02	ci right 2.842686e-02	k: 3578	n:130000
TTLL7   130000 perm   36 sec   (3598 perm/sec)   p_kst 2.752308e-02   p_cons 3.184615e-03   p_joint 2.500000e-03

Joint ci ratio: 2.117095e-01	ci left: 2.184290e-03	ci right 2.708086e-03	k: 341	n:140000
Cons ci ratio: 1.863718e-01	ci left: 2.856419e-03	ci right 3.450169e-03	k: 440	n:140000
KS ci ratio: 6.224342e-02	ci left: 2.669180e-02	ci right 2.841356e-02	k: 3856	n:140000
TTLL7   140000 perm   39 sec   (3547 perm/sec)   p_kst 2.754286e-02   p_cons 3.142857e-03   p_joint 2.435714e-03

Joint ci ratio: 2.410461e-01	ci left: 1.547969e-03	ci right 1.978324e-03	k: 263	n:150000
Cons ci ratio: 1.793870e-01	ci left: 2.888649e-03	ci right 3.464153e-03	k: 475	n:150000
KS ci ratio: 6.013661e-02	ci left: 2.671764e-02	ci right 2.838069e-02	k: 4131	n:150000
TTLL7   150000 perm   43 sec   (3486 perm/sec)   p_kst 2.754000e-02   p_cons 3.166667e-03   p_joint 1.753333e-03

Joint ci ratio: 2.340590e-01	ci left: 1.545270e-03	ci right 1.960619e-03	k: 279	n:160000
Cons ci ratio: 1.738167e-01	ci left: 2.893296e-03	ci right 3.449948e-03	k: 506	n:160000
KS ci ratio: 5.823020e-02	ci left: 2.674111e-02	ci right 2.835107e-02	k: 4406	n:160000
TTLL7   160000 perm   46 sec   (3444 perm/sec)   p_kst 2.753750e-02   p_cons 3.162500e-03   p_joint 1.743750e-03

Joint ci ratio: 1.506927e-01	ci left: 3.665868e-03	ci right 4.268889e-03	k: 673	n:170000
Cons ci ratio: 1.679539e-01	ci left: 2.925816e-03	ci right 3.467817e-03	k: 542	n:170000
KS ci ratio: 5.648191e-02	ci left: 2.677415e-02	ci right 2.833613e-02	k: 4683	n:170000
TTLL7   170000 perm   50 sec   (3404 perm/sec)   p_kst 2.754706e-02   p_cons 3.188235e-03   p_joint 3.958824e-03

Joint ci ratio: 1.467204e-01	ci left: 3.660115e-03	ci right 4.244928e-03	k: 710	n:180000
Cons ci ratio: 1.636424e-01	ci left: 2.917696e-03	ci right 3.442951e-03	k: 571	n:180000
KS ci ratio: 5.488788e-02	ci left: 2.679869e-02	ci right 2.831658e-02	k: 4959	n:180000
TTLL7   180000 perm   54 sec   (3362 perm/sec)   p_kst 2.755000e-02   p_cons 3.172222e-03   p_joint 3.944444e-03

Joint ci ratio: 1.435290e-01	ci left: 3.629779e-03	ci right 4.196049e-03	k: 742	n:190000
Cons ci ratio: 1.604521e-01	ci left: 2.880272e-03	ci right 3.387707e-03	k: 594	n:190000
KS ci ratio: 5.339017e-02	ci left: 2.685237e-02	ci right 2.833051e-02	k: 5241	n:190000
TTLL7   190000 perm   57 sec   (3322 perm/sec)   p_kst 2.758421e-02   p_cons 3.126316e-03   p_joint 3.905263e-03

Joint ci ratio: 1.431568e-01	ci left: 3.467552e-03	ci right 4.006989e-03	k: 746	n:200000
Cons ci ratio: 1.569327e-01	ci left: 2.865896e-03	ci right 3.358680e-03	k: 621	n:200000
KS ci ratio: 5.201357e-02	ci left: 2.689625e-02	ci right 2.833749e-02	k: 5522	n:200000
TTLL7   200000 perm   61 sec   (3280 perm/sec)   p_kst 2.761000e-02   p_cons 3.105000e-03   p_joint 3.730000e-03

Joint ci ratio: 1.466586e-01	ci left: 3.141767e-03	ci right 3.643524e-03	k: 711	n:210000
Cons ci ratio: 1.529277e-01	ci left: 2.880477e-03	ci right 3.361971e-03	k: 654	n:210000
KS ci ratio: 5.091897e-02	ci left: 2.674827e-02	ci right 2.815053e-02	k: 5763	n:210000
TTLL7   210000 perm   65 sec   (3240 perm/sec)   p_kst 2.744286e-02   p_cons 3.114286e-03   p_joint 3.385714e-03

Joint ci ratio: 1.461560e-01	ci left: 3.020840e-03	ci right 3.501486e-03	k: 716	n:220000
Cons ci ratio: 1.497613e-01	ci left: 2.871999e-03	ci right 3.341245e-03	k: 682	n:220000
KS ci ratio: 4.972489e-02	ci left: 2.678917e-02	ci right 2.815968e-02	k: 6043	n:220000
TTLL7   220000 perm   69 sec   (3202 perm/sec)   p_kst 2.746818e-02   p_cons 3.100000e-03   p_joint 3.254545e-03

Joint ci ratio: 1.458606e-01	ci left: 2.902053e-03	ci right 3.362784e-03	k: 719	n:230000
Cons ci ratio: 1.480422e-01	ci left: 2.814096e-03	ci right 3.268136e-03	k: 698	n:230000
KS ci ratio: 4.869822e-02	ci left: 2.673234e-02	ci right 2.807091e-02	k: 6301	n:230000
TTLL7   230000 perm   73 sec   (3165 perm/sec)   p_kst 2.739565e-02   p_cons 3.034783e-03   p_joint 3.126087e-03

Joint ci ratio: 1.484783e-01	ci left: 2.680780e-03	ci right 3.114697e-03	k: 694	n:240000
Cons ci ratio: 1.457687e-01	ci left: 2.785136e-03	ci right 3.227002e-03	k: 720	n:240000
KS ci ratio: 4.759852e-02	ci left: 2.682877e-02	ci right 2.814101e-02	k: 6595	n:240000
TTLL7   240000 perm   77 sec   (3128 perm/sec)   p_kst 2.747917e-02   p_cons 3.000000e-03   p_joint 2.891667e-03

Joint ci ratio: 1.547528e-01	ci left: 2.361861e-03	ci right 2.761811e-03	k: 639	n:250000
Cons ci ratio: 1.668131e-01	ci left: 2.020134e-03	ci right 2.391557e-03	k: 550	n:250000
KS ci ratio: 4.661881e-02	ci left: 2.686244e-02	ci right 2.814855e-02	k: 6875	n:250000
TTLL7   250000 perm   81 sec   (3094 perm/sec)   p_kst 2.750000e-02   p_cons 2.200000e-03   p_joint 2.556000e-03

Joint ci ratio: 1.514741e-01	ci left: 2.374588e-03	ci right 2.767401e-03	k: 667	n:260000
Cons ci ratio: 1.637227e-01	ci left: 2.019866e-03	ci right 2.383681e-03	k: 571	n:260000
KS ci ratio: 4.576302e-02	ci left: 2.681770e-02	ci right 2.807748e-02	k: 7135	n:260000
TTLL7   260000 perm   85 sec   (3060 perm/sec)   p_kst 2.744231e-02   p_cons 2.196154e-03   p_joint 2.565385e-03

Joint ci ratio: 1.496947e-01	ci left: 2.343664e-03	ci right 2.726399e-03	k: 683	n:270000
Cons ci ratio: 1.613442e-01	ci left: 2.005456e-03	ci right 2.360920e-03	k: 588	n:270000
KS ci ratio: 4.492147e-02	ci left: 2.681311e-02	ci right 2.804891e-02	k: 7405	n:270000
TTLL7   270000 perm   89 sec   (3026 perm/sec)   p_kst 2.742593e-02   p_cons 2.177778e-03   p_joint 2.529630e-03

Joint ci ratio: 1.286755e-01	ci left: 3.090943e-03	ci right 3.519439e-03	k: 924	n:280000
Cons ci ratio: 1.589351e-01	ci left: 1.995542e-03	ci right 2.343463e-03	k: 606	n:280000
KS ci ratio: 4.411289e-02	ci left: 2.682318e-02	ci right 2.803663e-02	k: 7679	n:280000
TTLL7   280000 perm   94 sec   (2985 perm/sec)   p_kst 2.742500e-02   p_cons 2.164286e-03   p_joint 3.300000e-03

Joint ci ratio: 1.276487e-01	ci left: 3.034419e-03	ci right 3.451468e-03	k: 939	n:290000
Cons ci ratio: 1.562553e-01	ci left: 1.996288e-03	ci right 2.337921e-03	k: 627	n:290000
KS ci ratio: 4.343074e-02	ci left: 2.673039e-02	ci right 2.792047e-02	k: 7923	n:290000
TTLL7   290000 perm   98 sec   (2954 perm/sec)   p_kst 2.732069e-02   p_cons 2.162069e-03   p_joint 3.237931e-03

Joint ci ratio: 9.842074e-02	ci left: 5.001028e-03	ci right 5.521933e-03	k: 1577	n:300000
Cons ci ratio: 1.537067e-01	ci left: 1.997031e-03	ci right 2.332703e-03	k: 648	n:300000
KS ci ratio: 4.272016e-02	ci left: 2.671648e-02	ci right 2.788601e-02	k: 8189	n:300000
TTLL7   300000 perm   103 sec   (2924 perm/sec)   p_kst 2.729667e-02   p_cons 2.160000e-03   p_joint 5.256667e-03

Joint ci ratio: 1.009011e-01	ci left: 4.600605e-03	ci right 5.092593e-03	k: 1501	n:310000
Cons ci ratio: 1.509405e-01	ci left: 2.007080e-03	ci right 2.337821e-03	k: 672	n:310000
KS ci ratio: 4.209713e-02	ci left: 2.663658e-02	ci right 2.778519e-02	k: 8434	n:310000
TTLL7   310000 perm   107 sec   (2895 perm/sec)   p_kst 2.720645e-02   p_cons 2.167742e-03   p_joint 4.841935e-03

Joint ci ratio: 1.052949e-01	ci left: 4.085355e-03	ci right 4.542444e-03	k: 1379	n:320000
Cons ci ratio: 1.487469e-01	ci left: 2.004515e-03	ci right 2.329606e-03	k: 692	n:320000
KS ci ratio: 4.149320e-02	ci left: 2.657107e-02	ci right 2.770002e-02	k: 8682	n:320000
TTLL7   320000 perm   112 sec   (2866 perm/sec)   p_kst 2.713125e-02   p_cons 2.162500e-03   p_joint 4.309375e-03

Joint ci ratio: 1.036918e-01	ci left: 4.088454e-03	ci right 4.538501e-03	k: 1422	n:330000
Cons ci ratio: 1.459301e-01	ci left: 2.022575e-03	ci right 2.343843e-03	k: 719	n:330000
KS ci ratio: 4.088631e-02	ci left: 2.654564e-02	ci right 2.765662e-02	k: 8942	n:330000
TTLL7   330000 perm   116 sec   (2838 perm/sec)   p_kst 2.709697e-02   p_cons 2.178788e-03   p_joint 4.309091e-03

Joint ci ratio: 1.030460e-01	ci left: 4.019770e-03	ci right 4.459334e-03	k: 1440	n:340000
Cons ci ratio: 1.443364e-01	ci left: 2.008437e-03	ci right 2.323674e-03	k: 735	n:340000
KS ci ratio: 4.025586e-02	ci left: 2.658589e-02	ci right 2.768101e-02	k: 9224	n:340000
TTLL7   340000 perm   121 sec   (2810 perm/sec)   p_kst 2.712941e-02   p_cons 2.161765e-03   p_joint 4.235294e-03

Joint ci ratio: 1.017834e-01	ci left: 4.005141e-03	ci right 4.437417e-03	k: 1476	n:350000
Cons ci ratio: 1.423205e-01	ci left: 2.008901e-03	ci right 2.319433e-03	k: 756	n:350000
KS ci ratio: 3.973110e-02	ci left: 2.652211e-02	ci right 2.760003e-02	k: 9470	n:350000
TTLL7   350000 perm   126 sec   (2779 perm/sec)   p_kst 2.705714e-02   p_cons 2.160000e-03   p_joint 4.217143e-03

Joint ci ratio: 1.002009e-01	ci left: 4.021146e-03	ci right 4.448005e-03	k: 1523	n:360000
Cons ci ratio: 1.399367e-01	ci left: 2.022772e-03	ci right 2.329774e-03	k: 782	n:360000
KS ci ratio: 3.918904e-02	ci left: 2.651148e-02	ci right 2.757393e-02	k: 9734	n:360000
TTLL7   360000 perm   131 sec   (2752 perm/sec)   p_kst 2.703889e-02   p_cons 2.172222e-03   p_joint 4.230556e-03

Joint ci ratio: 1.007391e-01	ci left: 3.870295e-03	ci right 4.283477e-03	k: 1507	n:370000
Cons ci ratio: 1.372445e-01	ci left: 2.048983e-03	ci right 2.353492e-03	k: 813	n:370000
KS ci ratio: 3.869245e-02	ci left: 2.646939e-02	ci right 2.751642e-02	k: 9986	n:370000
TTLL7   370000 perm   136 sec   (2725 perm/sec)   p_kst 2.698919e-02   p_cons 2.197297e-03   p_joint 4.072973e-03

Joint ci ratio: 9.917215e-02	ci left: 3.891605e-03	ci right 4.300224e-03	k: 1555	n:380000
Cons ci ratio: 1.352646e-01	ci left: 2.056068e-03	ci right 2.356867e-03	k: 837	n:380000
KS ci ratio: 3.817023e-02	ci left: 2.648956e-02	ci right 2.752293e-02	k: 10261	n:380000
TTLL7   380000 perm   141 sec   (2699 perm/sec)   p_kst 2.700263e-02   p_cons 2.202632e-03   p_joint 4.092105e-03

Joint ci ratio: 9.829336e-02	ci left: 3.861840e-03	ci right 4.263533e-03	k: 1583	n:390000
Cons ci ratio: 1.338356e-01	ci left: 2.047948e-03	ci right 2.344142e-03	k: 855	n:390000
KS ci ratio: 3.768698e-02	ci left: 2.648338e-02	ci right 2.750315e-02	k: 10526	n:390000
TTLL7   390000 perm   146 sec   (2674 perm/sec)   p_kst 2.698974e-02   p_cons 2.192308e-03   p_joint 4.058974e-03

Joint ci ratio: 9.876899e-02	ci left: 3.728705e-03	ci right 4.118535e-03	k: 1568	n:400000
Cons ci ratio: 1.315489e-01	ci left: 2.069261e-03	ci right 2.363025e-03	k: 885	n:400000
KS ci ratio: 3.724825e-02	ci left: 2.644043e-02	ci right 2.744644e-02	k: 10776	n:400000
TTLL7   400000 perm   151 sec   (2649 perm/sec)   p_kst 2.694000e-02   p_cons 2.212500e-03   p_joint 3.920000e-03

Joint ci ratio: 9.858469e-02	ci left: 3.652027e-03	ci right 4.033087e-03	k: 1574	n:410000
Cons ci ratio: 1.294464e-01	ci left: 2.087215e-03	ci right 2.378428e-03	k: 914	n:410000
KS ci ratio: 3.676628e-02	ci left: 2.648182e-02	ci right 2.747610e-02	k: 11060	n:410000
TTLL7   410000 perm   156 sec   (2624 perm/sec)   p_kst 2.697561e-02   p_cons 2.229268e-03   p_joint 3.839024e-03

Joint ci ratio: 9.729554e-02	ci left: 3.662625e-03	ci right 4.039508e-03	k: 1616	n:420000
Cons ci ratio: 1.279862e-01	ci left: 2.085909e-03	ci right 2.373408e-03	k: 935	n:420000
KS ci ratio: 3.633053e-02	ci left: 2.648121e-02	ci right 2.746343e-02	k: 11327	n:420000
TTLL7   420000 perm   162 sec   (2600 perm/sec)   p_kst 2.696905e-02   p_cons 2.226190e-03   p_joint 3.847619e-03

Joint ci ratio: 9.726972e-02	ci left: 3.579710e-03	ci right 3.947957e-03	k: 1617	n:430000
Cons ci ratio: 1.269071e-01	ci left: 2.073422e-03	ci right 2.356608e-03	k: 951	n:430000
KS ci ratio: 3.592744e-02	ci left: 2.645533e-02	ci right 2.742548e-02	k: 11583	n:430000
TTLL7   430000 perm   167 sec   (2576 perm/sec)   p_kst 2.693721e-02   p_cons 2.211628e-03   p_joint 3.760465e-03

Joint ci ratio: 9.709338e-02	ci left: 3.511652e-03	ci right 3.872205e-03	k: 1623	n:440000
Cons ci ratio: 1.257247e-01	ci left: 2.065915e-03	ci right 2.345251e-03	k: 969	n:440000
KS ci ratio: 3.550358e-02	ci left: 2.648025e-02	ci right 2.743962e-02	k: 11861	n:440000
TTLL7   440000 perm   173 sec   (2549 perm/sec)   p_kst 2.695682e-02   p_cons 2.202273e-03   p_joint 3.688636e-03

Joint ci ratio: 9.603489e-02	ci left: 3.511683e-03	ci right 3.868088e-03	k: 1659	n:450000
Cons ci ratio: 1.243856e-01	ci left: 2.065212e-03	ci right 2.341260e-03	k: 990	n:450000
KS ci ratio: 3.511967e-02	ci left: 2.646668e-02	ci right 2.741498e-02	k: 12122	n:450000
TTLL7   450000 perm   178 sec   (2525 perm/sec)   p_kst 2.693778e-02   p_cons 2.200000e-03   p_joint 3.686667e-03

Joint ci ratio: 9.586503e-02	ci left: 3.448067e-03	ci right 3.797362e-03	k: 1665	n:460000
Cons ci ratio: 1.231494e-01	ci left: 2.062448e-03	ci right 2.335187e-03	k: 1010	n:460000
KS ci ratio: 3.474938e-02	ci left: 2.645159e-02	ci right 2.738916e-02	k: 12382	n:460000
TTLL7   460000 perm   184 sec   (2502 perm/sec)   p_kst 2.691739e-02   p_cons 2.195652e-03   p_joint 3.619565e-03

Joint ci ratio: 9.630480e-02	ci left: 3.343547e-03	ci right 3.683895e-03	k: 1650	n:470000
Cons ci ratio: 1.220086e-01	ci left: 2.057752e-03	ci right 2.327167e-03	k: 1029	n:470000
KS ci ratio: 3.433757e-02	ci left: 2.651737e-02	ci right 2.744592e-02	k: 12680	n:470000
TTLL7   470000 perm   190 sec   (2479 perm/sec)   p_kst 2.697872e-02   p_cons 2.189362e-03   p_joint 3.510638e-03

Joint ci ratio: 9.541362e-02	ci left: 3.336924e-03	ci right 3.673279e-03	k: 1681	n:480000
Cons ci ratio: 1.207261e-01	ci left: 2.059324e-03	ci right 2.325909e-03	k: 1051	n:480000
KS ci ratio: 3.397236e-02	ci left: 2.653089e-02	ci right 2.744983e-02	k: 12954	n:480000
TTLL7   480000 perm   195 sec   (2457 perm/sec)   p_kst 2.698750e-02   p_cons 2.189583e-03   p_joint 3.502083e-03

Joint ci ratio: 1.136886e-01	ci left: 2.282770e-03	ci right 2.559900e-03	k: 1185	n:490000
Cons ci ratio: 1.198754e-01	ci left: 2.046987e-03	ci right 2.309975e-03	k: 1066	n:490000
KS ci ratio: 3.361072e-02	ci left: 2.655605e-02	ci right 2.746588e-02	k: 13234	n:490000
TTLL7   490000 perm   201 sec   (2435 perm/sec)   p_kst 2.700816e-02   p_cons 2.175510e-03   p_joint 2.418367e-03

Joint ci ratio: 1.129304e-01	ci left: 2.268207e-03	ci right 2.541610e-03	k: 1201	n:500000
Cons ci ratio: 1.190975e-01	ci left: 2.033210e-03	ci right 2.292613e-03	k: 1080	n:500000
KS ci ratio: 3.325028e-02	ci left: 2.659612e-02	ci right 2.749737e-02	k: 13522	n:500000
TTLL7   500000 perm   207 sec   (2414 perm/sec)   p_kst 2.704400e-02   p_cons 2.160000e-03   p_joint 2.402000e-03

Joint ci ratio: 1.119111e-01	ci left: 2.265656e-03	ci right 2.536124e-03	k: 1223	n:510000
Cons ci ratio: 1.180111e-01	ci left: 2.031395e-03	ci right 2.288038e-03	k: 1100	n:510000
KS ci ratio: 3.292079e-02	ci left: 2.660355e-02	ci right 2.749595e-02	k: 13794	n:510000
TTLL7   510000 perm   213 sec   (2392 perm/sec)   p_kst 2.704706e-02   p_cons 2.156863e-03   p_joint 2.398039e-03

Joint ci ratio: 1.136486e-01	ci left: 2.152932e-03	ci right 2.414201e-03	k: 1186	n:520000
Cons ci ratio: 1.170061e-01	ci left: 2.027794e-03	ci right 2.281650e-03	k: 1119	n:520000
KS ci ratio: 3.260925e-02	ci left: 2.659738e-02	ci right 2.748097e-02	k: 14059	n:520000
TTLL7   520000 perm   219 sec   (2372 perm/sec)   p_kst 2.703654e-02   p_cons 2.151923e-03   p_joint 2.280769e-03

Joint ci ratio: 1.126099e-01	ci left: 2.152646e-03	ci right 2.411334e-03	k: 1208	n:530000
Cons ci ratio: 1.157720e-01	ci left: 2.033499e-03	ci right 2.285200e-03	k: 1143	n:530000
KS ci ratio: 3.226706e-02	ci left: 2.665513e-02	ci right 2.753118e-02	k: 14358	n:530000
TTLL7   530000 perm   225 sec   (2352 perm/sec)   p_kst 2.709057e-02   p_cons 2.156604e-03   p_joint 2.279245e-03

Joint ci ratio: 1.199438e-01	ci left: 1.855644e-03	ci right 2.094194e-03	k: 1065	n:540000
Cons ci ratio: 1.149714e-01	ci left: 2.024616e-03	ci right 2.273366e-03	k: 1159	n:540000
KS ci ratio: 3.196569e-02	ci left: 2.666118e-02	ci right 2.752909e-02	k: 14630	n:540000
TTLL7   540000 perm   232 sec   (2331 perm/sec)   p_kst 2.709259e-02   p_cons 2.146296e-03   p_joint 1.972222e-03

Joint ci ratio: 1.196651e-01	ci left: 1.830722e-03	ci right 2.065483e-03	k: 1070	n:550000
Cons ci ratio: 1.140900e-01	ci left: 2.019594e-03	ci right 2.265697e-03	k: 1177	n:550000
KS ci ratio: 3.169337e-02	ci left: 2.663276e-02	ci right 2.749223e-02	k: 14883	n:550000
TTLL7   550000 perm   238 sec   (2307 perm/sec)   p_kst 2.706000e-02   p_cons 2.140000e-03   p_joint 1.945455e-03

Joint ci ratio: 1.185632e-01	ci left: 1.832681e-03	ci right 2.065377e-03	k: 1090	n:560000
Cons ci ratio: 1.129921e-01	ci left: 2.023435e-03	ci right 2.267476e-03	k: 1200	n:560000
KS ci ratio: 3.142471e-02	ci left: 2.661071e-02	ci right 2.746205e-02	k: 15139	n:560000
TTLL7   560000 perm   245 sec   (2288 perm/sec)   p_kst 2.703393e-02   p_cons 2.142857e-03   p_joint 1.946429e-03

Joint ci ratio: 1.173325e-01	ci left: 1.839689e-03	ci right 2.070683e-03	k: 1113	n:570000
Cons ci ratio: 1.116514e-01	ci left: 2.037385e-03	ci right 2.280000e-03	k: 1229	n:570000
KS ci ratio: 3.114716e-02	ci left: 2.661558e-02	ci right 2.745942e-02	k: 15410	n:570000
TTLL7   570000 perm   251 sec   (2270 perm/sec)   p_kst 2.703509e-02   p_cons 2.156140e-03   p_joint 1.952632e-03

Joint ci ratio: 1.160882e-01	ci left: 1.848142e-03	ci right 2.077568e-03	k: 1137	n:580000
Cons ci ratio: 1.106218e-01	ci left: 2.040811e-03	ci right 2.281447e-03	k: 1252	n:580000
KS ci ratio: 3.087381e-02	ci left: 2.662544e-02	ci right 2.746205e-02	k: 15684	n:580000
TTLL7   580000 perm   258 sec   (2252 perm/sec)   p_kst 2.704138e-02   p_cons 2.158621e-03   p_joint 1.960345e-03

Joint ci ratio: 1.156329e-01	ci left: 1.831629e-03	ci right 2.058052e-03	k: 1146	n:590000
Cons ci ratio: 1.094912e-01	ci left: 2.049076e-03	ci right 2.288058e-03	k: 1278	n:590000
KS ci ratio: 3.063418e-02	ci left: 2.658958e-02	ci right 2.741847e-02	k: 15931	n:590000
TTLL7   590000 perm   264 sec   (2234 perm/sec)   p_kst 2.700169e-02   p_cons 2.166102e-03   p_joint 1.942373e-03

Joint ci ratio: 1.145394e-01	ci left: 1.836714e-03	ci right 2.061472e-03	k: 1168	n:600000
Cons ci ratio: 1.086871e-01	ci left: 2.045727e-03	ci right 2.282454e-03	k: 1297	n:600000
KS ci ratio: 3.035668e-02	ci left: 2.662938e-02	ci right 2.745186e-02	k: 16223	n:600000
TTLL7   600000 perm   271 sec   (2216 perm/sec)   p_kst 2.703833e-02   p_cons 2.161667e-03   p_joint 1.946667e-03

Joint ci ratio: 1.136678e-01	ci left: 1.835269e-03	ci right 2.058028e-03	k: 1186	n:610000
Cons ci ratio: 1.077776e-01	ci left: 2.047280e-03	ci right 2.282078e-03	k: 1319	n:610000
KS ci ratio: 3.011471e-02	ci left: 2.661909e-02	ci right 2.743459e-02	k: 16485	n:610000
TTLL7   610000 perm   278 sec   (2198 perm/sec)   p_kst 2.702459e-02   p_cons 2.162295e-03   p_joint 1.944262e-03

Joint ci ratio: 1.184114e-01	ci left: 1.660011e-03	ci right 1.870494e-03	k: 1093	n:620000
Cons ci ratio: 1.069704e-01	ci left: 2.045651e-03	ci right 2.278395e-03	k: 1339	n:620000
KS ci ratio: 2.987935e-02	ci left: 2.660756e-02	ci right 2.741622e-02	k: 16746	n:620000
TTLL7   620000 perm   285 sec   (2179 perm/sec)   p_kst 2.700968e-02   p_cons 2.159677e-03   p_joint 1.762903e-03

Joint ci ratio: 1.177678e-01	ci left: 1.652146e-03	ci right 1.860415e-03	k: 1105	n:630000
Cons ci ratio: 1.060249e-01	ci left: 2.050261e-03	ci right 2.281339e-03	k: 1363	n:630000
KS ci ratio: 2.960651e-02	ci left: 2.667206e-02	ci right 2.747515e-02	k: 17055	n:630000
TTLL7   630000 perm   291 sec   (2162 perm/sec)   p_kst 2.707143e-02   p_cons 2.163492e-03   p_joint 1.753968e-03

Joint ci ratio: 1.170821e-01	ci left: 1.646047e-03	ci right 1.852255e-03	k: 1118	n:640000
Cons ci ratio: 1.052562e-01	ci left: 2.048650e-03	ci right 2.277769e-03	k: 1383	n:640000
KS ci ratio: 2.938802e-02	ci left: 2.665080e-02	ci right 2.744724e-02	k: 17310	n:640000
TTLL7   640000 perm   298 sec   (2145 perm/sec)   p_kst 2.704688e-02   p_cons 2.160938e-03   p_joint 1.746875e-03

Joint ci ratio: 1.163054e-01	ci left: 1.643127e-03	ci right 1.847509e-03	k: 1133	n:650000
Cons ci ratio: 1.045039e-01	ci left: 2.047094e-03	ci right 2.274302e-03	k: 1403	n:650000
KS ci ratio: 2.917343e-02	ci left: 2.663175e-02	ci right 2.742170e-02	k: 17566	n:650000
TTLL7   650000 perm   305 sec   (2129 perm/sec)   p_kst 2.702462e-02   p_cons 2.158462e-03   p_joint 1.743077e-03

Joint ci ratio: 1.164614e-01	ci left: 1.613816e-03	ci right 1.814840e-03	k: 1130	n:660000
Cons ci ratio: 1.035492e-01	ci left: 2.054447e-03	ci right 2.280261e-03	k: 1429	n:660000
KS ci ratio: 2.896682e-02	ci left: 2.660728e-02	ci right 2.739082e-02	k: 17818	n:660000
TTLL7   660000 perm   312 sec   (2113 perm/sec)   p_kst 2.699697e-02   p_cons 2.165152e-03   p_joint 1.712121e-03

Joint ci ratio: 1.180953e-01	ci left: 1.544815e-03	ci right 1.740132e-03	k: 1099	n:670000
Cons ci ratio: 1.027972e-01	ci left: 2.054318e-03	ci right 2.278379e-03	k: 1450	n:670000
KS ci ratio: 2.874248e-02	ci left: 2.662357e-02	ci right 2.740142e-02	k: 18097	n:670000
TTLL7   670000 perm   320 sec   (2097 perm/sec)   p_kst 2.701045e-02   p_cons 2.164179e-03   p_joint 1.640299e-03

Joint ci ratio: 1.171406e-01	ci left: 1.547789e-03	ci right 1.741790e-03	k: 1117	n:680000
Cons ci ratio: 1.020961e-01	ci left: 2.052766e-03	ci right 2.275039e-03	k: 1470	n:680000
KS ci ratio: 2.851769e-02	ci left: 2.664963e-02	ci right 2.742205e-02	k: 18383	n:680000
TTLL7   680000 perm   327 sec   (2079 perm/sec)   p_kst 2.703382e-02   p_cons 2.161765e-03   p_joint 1.642647e-03

Joint ci ratio: 1.177235e-01	ci left: 1.509882e-03	ci right 1.700139e-03	k: 1106	n:690000
Cons ci ratio: 1.012731e-01	ci left: 2.056914e-03	ci right 2.277734e-03	k: 1494	n:690000
KS ci ratio: 2.830978e-02	ci left: 2.665337e-02	ci right 2.742018e-02	k: 18654	n:690000
TTLL7   690000 perm   334 sec   (2064 perm/sec)   p_kst 2.703478e-02   p_cons 2.165217e-03   p_joint 1.602899e-03

Joint ci ratio: 1.168819e-01	ci left: 1.510498e-03	ci right 1.699379e-03	k: 1122	n:700000
Cons ci ratio: 1.004035e-01	ci left: 2.063736e-03	ci right 2.283274e-03	k: 1520	n:700000
KS ci ratio: 2.810712e-02	ci left: 2.665560e-02	ci right 2.741689e-02	k: 18924	n:700000
TTLL7   700000 perm   342 sec   (2049 perm/sec)   p_kst 2.703429e-02   p_cons 2.171429e-03   p_joint 1.602857e-03

Joint ci ratio: 1.164169e-01	ci left: 1.501530e-03	ci right 1.688490e-03	k: 1131	n:710000
Cons ci ratio: 9.962045e-02	ci left: 2.067626e-03	ci right 2.285763e-03	k: 1544	n:710000
KS ci ratio: 2.791472e-02	ci left: 2.664659e-02	ci right 2.740234e-02	k: 19186	n:710000
TTLL7   710000 perm   349 sec   (2034 perm/sec)   p_kst 2.702254e-02   p_cons 2.174648e-03   p_joint 1.592958e-03

Joint ci ratio: 1.153014e-01	ci left: 1.510345e-03	ci right 1.696479e-03	k: 1153	n:720000
Cons ci ratio: 9.869796e-02	ci left: 2.078189e-03	ci right 2.295292e-03	k: 1573	n:720000
KS ci ratio: 2.770647e-02	ci left: 2.667511e-02	ci right 2.742593e-02	k: 19475	n:720000
TTLL7   720000 perm   357 sec   (2019 perm/sec)   p_kst 2.704861e-02   p_cons 2.184722e-03   p_joint 1.601389e-03

Joint ci ratio: 1.297230e-01	ci left: 1.168259e-03	ci right 1.331631e-03	k: 911	n:730000
Cons ci ratio: 9.801534e-02	ci left: 2.079116e-03	ci right 2.294728e-03	k: 1595	n:730000
KS ci ratio: 2.702318e-02	ci left: 2.763908e-02	ci right 2.839755e-02	k: 20452	n:730000
TTLL7   730000 perm   364 sec   (2005 perm/sec)   p_kst 2.801644e-02   p_cons 2.184932e-03   p_joint 1.247945e-03

Joint ci ratio: 1.287385e-01	ci left: 1.170779e-03	ci right 1.333166e-03	k: 925	n:740000
Cons ci ratio: 9.737686e-02	ci left: 2.078705e-03	ci right 2.292789e-03	k: 1616	n:740000
KS ci ratio: 2.684209e-02	ci left: 2.763738e-02	ci right 2.839065e-02	k: 20729	n:740000
TTLL7   740000 perm   372 sec   (1990 perm/sec)   p_kst 2.801216e-02   p_cons 2.183784e-03   p_joint 1.250000e-03

Joint ci ratio: 1.279124e-01	ci left: 1.170655e-03	ci right 1.331903e-03	k: 937	n:750000
Cons ci ratio: 9.678030e-02	ci left: 2.077008e-03	ci right 2.289533e-03	k: 1636	n:750000
KS ci ratio: 2.664958e-02	ci left: 2.766621e-02	ci right 2.841477e-02	k: 21029	n:750000
TTLL7   750000 perm   380 sec   (1976 perm/sec)   p_kst 2.803867e-02   p_cons 2.181333e-03   p_joint 1.249333e-03

Joint ci ratio: 1.142696e-01	ci left: 1.457690e-03	ci right 1.635618e-03	k: 1174	n:760000
Cons ci ratio: 9.625281e-02	ci left: 2.072791e-03	ci right 2.283663e-03	k: 1654	n:760000
KS ci ratio: 2.646690e-02	ci left: 2.768254e-02	ci right 2.842633e-02	k: 21320	n:760000
TTLL7   760000 perm   388 sec   (1961 perm/sec)   p_kst 2.805263e-02   p_cons 2.176316e-03   p_joint 1.544737e-03

Joint ci ratio: 1.146132e-01	ci left: 1.429927e-03	ci right 1.605027e-03	k: 1167	n:770000
Cons ci ratio: 9.564794e-02	ci left: 2.072490e-03	ci right 2.281932e-03	k: 1675	n:770000
KS ci ratio: 2.629231e-02	ci left: 2.768942e-02	ci right 2.842842e-02	k: 21604	n:770000
TTLL7   770000 perm   396 sec   (1946 perm/sec)   p_kst 2.805714e-02   p_cons 2.175325e-03   p_joint 1.515584e-03

Joint ci ratio: 1.149103e-01	ci left: 1.404122e-03	ci right 1.576538e-03	k: 1161	n:780000
Cons ci ratio: 9.497024e-02	ci left: 2.075956e-03	ci right 2.284179e-03	k: 1699	n:780000
KS ci ratio: 2.611806e-02	ci left: 2.770252e-02	ci right 2.843689e-02	k: 21893	n:780000
TTLL7   780000 perm   404 sec   (1932 perm/sec)   p_kst 2.806795e-02   p_cons 2.178205e-03   p_joint 1.488462e-03

Joint ci ratio: 1.145663e-01	ci left: 1.394954e-03	ci right 1.565697e-03	k: 1168	n:790000
Cons ci ratio: 9.469285e-02	ci left: 2.062035e-03	ci right 2.268225e-03	k: 1709	n:790000
KS ci ratio: 2.596229e-02	ci left: 2.768385e-02	ci right 2.841329e-02	k: 22157	n:790000
TTLL7   790000 perm   412 sec   (1919 perm/sec)   p_kst 2.804684e-02   p_cons 2.163291e-03   p_joint 1.478481e-03

Joint ci ratio: 1.136462e-01	ci left: 1.400590e-03	ci right 1.570553e-03	k: 1187	n:800000
Cons ci ratio: 9.411675e-02	ci left: 2.061890e-03	ci right 2.266741e-03	k: 1730	n:800000
KS ci ratio: 2.580512e-02	ci left: 2.767436e-02	ci right 2.839906e-02	k: 22428	n:800000
TTLL7   800000 perm   420 sec   (1905 perm/sec)   p_kst 2.803500e-02   p_cons 2.162500e-03   p_joint 1.483750e-03

Joint ci ratio: 1.167906e-01	ci left: 1.307758e-03	ci right 1.471150e-03	k: 1124	n:810000
Cons ci ratio: 9.344418e-02	ci left: 2.066575e-03	ci right 2.270345e-03	k: 1755	n:810000
KS ci ratio: 2.564496e-02	ci left: 2.767738e-02	ci right 2.839760e-02	k: 22709	n:810000
TTLL7   810000 perm   428 sec   (1892 perm/sec)   p_kst 2.803580e-02   p_cons 2.166667e-03   p_joint 1.387654e-03

Joint ci ratio: 9.744767e-02	ci left: 1.873515e-03	ci right 2.066615e-03	k: 1614	n:820000
Cons ci ratio: 9.286425e-02	ci left: 2.067577e-03	ci right 2.270112e-03	k: 1777	n:820000
KS ci ratio: 2.549346e-02	ci left: 2.766823e-02	ci right 2.838389e-02	k: 22980	n:820000
TTLL7   820000 perm   437 sec   (1878 perm/sec)   p_kst 2.802439e-02   p_cons 2.167073e-03   p_joint 1.968293e-03

Outputting figure to mutsig2_images.part000000000184/TTLL7.9_2744_820000_0.028024_0.0021671_0.0019683.png
                gene_name: TTLL7
               theta_stop: 0.097 
                    nperm: 820000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.0022 
      ci_cons_bounds_left: 0.0021 
     ci_cons_bounds_right: 0.0023 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 15 percent done.
TUBA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
KS ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
TUBA3D   10000 perm   2 sec   (5400 perm/sec)   p_kst 8.157000e-01   p_cons 9.014000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBA3D.9_1373_10000_0.8157_0.9014_1.png
                gene_name: TUBA3D
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
TULP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
TULP4   10000 perm   2 sec   (4639 perm/sec)   p_kst 2.689000e-01   p_cons 1.030000e-01   p_joint 2.394000e-01

Joint ci ratio: 6.981906e-02	ci left: 1.313760e-01	ci right 1.409301e-01	k: 2722	n:20000
Cons ci ratio: 8.032737e-02	ci left: 1.021099e-01	ci right 1.107049e-01	k: 2127	n:20000
KS ci ratio: 4.643057e-02	ci left: 2.566105e-01	ci right 2.688586e-01	k: 5254	n:20000
TULP4   20000 perm   5 sec   (4245 perm/sec)   p_kst 2.627000e-01   p_cons 1.063500e-01   p_joint 1.361000e-01

Outputting figure to mutsig2_images.part000000000184/TULP4.9_4688_20000_0.2627_0.10635_0.1361.png
                gene_name: TULP4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
TUBGCP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
Cons ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
KS ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
TUBGCP5   10000 perm   2 sec   (4916 perm/sec)   p_kst 1.377000e-01   p_cons 6.627000e-01   p_joint 1.918000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP5.8_3214_10000_0.1377_0.6627_0.1918.png
                gene_name: TUBGCP5
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 20 percent done.
TWISTNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
Cons ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
KS ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
TWISTNB   10000 perm   2 sec   (6293 perm/sec)   p_kst 6.941000e-01   p_cons 5.901000e-01   p_joint 7.286000e-01

Outputting figure to mutsig2_images.part000000000184/TWISTNB.8_1033_10000_0.6941_0.5901_0.7286.png
                gene_name: TWISTNB
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 22 percent done.
TTLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
Cons ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
TTLL4   10000 perm   2 sec   (5104 perm/sec)   p_kst 3.297000e-01   p_cons 1.367000e-01   p_joint 4.855000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL4.7_3672_10000_0.3297_0.1367_0.4855.png
                gene_name: TTLL4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
TTYH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
TTYH2   10000 perm   2 sec   (5400 perm/sec)   p_kst 9.739000e-01   p_cons 3.611000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000184/TTYH2.7_1661_10000_0.9739_0.3611_0.7134.png
                gene_name: TTYH2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 25 percent done.
TUBB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
TUBB8   10000 perm   2 sec   (6113 perm/sec)   p_kst 1.200000e-02   p_cons 2.686000e-01   p_joint 1.310000e-02

Joint ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
Cons ci ratio: 4.568150e-02	ci left: 2.629129e-01	ci right 2.752543e-01	k: 5381	n:20000
KS ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
TUBB8   20000 perm   4 sec   (5469 perm/sec)   p_kst 1.145000e-02   p_cons 2.690500e-01   p_joint 1.515000e-02

Joint ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
Cons ci ratio: 3.734000e-02	ci left: 2.636235e-01	ci right 2.736880e-01	k: 8059	n:30000
KS ci ratio: 2.059352e-01	ci left: 1.070373e-02	ci right 1.319213e-02	k: 357	n:30000
TUBB8   30000 perm   6 sec   (4996 perm/sec)   p_kst 1.190000e-02   p_cons 2.686333e-01   p_joint 1.553333e-02

Joint ci ratio: 1.673883e-01	ci left: 1.239200e-02	ci right 1.467943e-02	k: 540	n:40000
Cons ci ratio: 3.258334e-02	ci left: 2.613511e-01	ci right 2.700329e-01	k: 10627	n:40000
KS ci ratio: 1.749164e-01	ci left: 1.131462e-02	ci right 1.350702e-02	k: 495	n:40000
TUBB8   40000 perm   8 sec   (4881 perm/sec)   p_kst 1.237500e-02   p_cons 2.656750e-01   p_joint 1.350000e-02

Joint ci ratio: 1.381822e-01	ci left: 1.474446e-02	ci right 1.695227e-02	k: 791	n:50000
Cons ci ratio: 2.920481e-02	ci left: 2.609960e-01	ci right 2.687513e-01	k: 13243	n:50000
KS ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
TUBB8   50000 perm   10 sec   (4781 perm/sec)   p_kst 1.216000e-02   p_cons 2.648600e-01   p_joint 1.582000e-02

Joint ci ratio: 1.269184e-01	ci left: 1.465587e-02	ci right 1.665804e-02	k: 938	n:60000
Cons ci ratio: 2.660535e-02	ci left: 2.621356e-01	ci right 2.692204e-01	k: 15940	n:60000
KS ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
TUBB8   60000 perm   13 sec   (4700 perm/sec)   p_kst 1.186667e-02   p_cons 2.656667e-01   p_joint 1.563333e-02

Joint ci ratio: 1.176949e-01	ci left: 1.468110e-02	ci right 1.653080e-02	k: 1091	n:70000
Cons ci ratio: 2.461991e-02	ci left: 2.625870e-01	ci right 2.691467e-01	k: 18610	n:70000
KS ci ratio: 1.356693e-01	ci left: 1.098558e-02	ci right 1.259813e-02	k: 824	n:70000
TUBB8   70000 perm   15 sec   (4620 perm/sec)   p_kst 1.177143e-02   p_cons 2.658571e-01   p_joint 1.558571e-02

Joint ci ratio: 1.144072e-01	ci left: 1.363445e-02	ci right 1.530103e-02	k: 1156	n:80000
Cons ci ratio: 2.305175e-02	ci left: 2.624298e-01	ci right 2.685622e-01	k: 21239	n:80000
KS ci ratio: 1.265583e-01	ci left: 1.109954e-02	ci right 1.261118e-02	k: 947	n:80000
TUBB8   80000 perm   18 sec   (4544 perm/sec)   p_kst 1.183750e-02   p_cons 2.654875e-01   p_joint 1.445000e-02

Joint ci ratio: 1.075138e-01	ci left: 1.377241e-02	ci right 1.534800e-02	k: 1309	n:90000
Cons ci ratio: 2.174703e-02	ci left: 2.623623e-01	ci right 2.681417e-01	k: 23872	n:90000
KS ci ratio: 1.189541e-01	ci left: 1.121256e-02	ci right 1.264138e-02	k: 1072	n:90000
TUBB8   90000 perm   20 sec   (4462 perm/sec)   p_kst 1.191111e-02   p_cons 2.652444e-01   p_joint 1.454444e-02

Joint ci ratio: 1.014168e-01	ci left: 1.397293e-02	ci right 1.547541e-02	k: 1471	n:100000
Cons ci ratio: 2.063029e-02	ci left: 2.625256e-01	ci right 2.680080e-01	k: 26526	n:100000
KS ci ratio: 1.125266e-01	ci left: 1.131487e-02	ci right 1.267365e-02	k: 1198	n:100000
TUBB8   100000 perm   23 sec   (4388 perm/sec)   p_kst 1.198000e-02   p_cons 2.652600e-01   p_joint 1.471000e-02

Joint ci ratio: 1.076582e-01	ci left: 1.126754e-02	ci right 1.255838e-02	k: 1309	n:110000
Cons ci ratio: 1.966182e-02	ci left: 2.628195e-01	ci right 2.680474e-01	k: 29197	n:110000
KS ci ratio: 1.076582e-01	ci left: 1.126754e-02	ci right 1.255838e-02	k: 1309	n:110000
TUBB8   110000 perm   25 sec   (4316 perm/sec)   p_kst 1.190000e-02   p_cons 2.654273e-01   p_joint 1.190000e-02

Joint ci ratio: 9.746763e-02	ci left: 1.265133e-02	ci right 1.395568e-02	k: 1595	n:120000
Cons ci ratio: 1.884303e-02	ci left: 2.625544e-01	ci right 2.675570e-01	k: 31806	n:120000
KS ci ratio: 1.026790e-01	ci left: 1.138346e-02	ci right 1.262362e-02	k: 1439	n:120000
TUBB8   120000 perm   28 sec   (4244 perm/sec)   p_kst 1.199167e-02   p_cons 2.650500e-01   p_joint 1.329167e-02

Joint ci ratio: 9.425350e-02	ci left: 1.251149e-02	ci right 1.375653e-02	k: 1706	n:130000
Cons ci ratio: 1.809436e-02	ci left: 2.628555e-01	ci right 2.676627e-01	k: 34483	n:130000
KS ci ratio: 9.919932e-02	ci left: 1.128009e-02	ci right 1.246491e-02	k: 1542	n:130000
TUBB8   130000 perm   31 sec   (4178 perm/sec)   p_kst 1.186154e-02   p_cons 2.652538e-01   p_joint 1.312308e-02

Outputting figure to mutsig2_images.part000000000184/TUBB8.7_1351_130000_0.011862_0.26525_0.013123.png
                gene_name: TUBB8
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 27 percent done.
TUBGCP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
Cons ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
KS ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
TUBGCP6   10000 perm   2 sec   (4470 perm/sec)   p_kst 3.168000e-01   p_cons 8.553000e-01   p_joint 6.484000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP6.7_5560_10000_0.3168_0.8553_0.6484.png
                gene_name: TUBGCP6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
TUSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
Cons ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
KS ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
TUSC3   10000 perm   2 sec   (6239 perm/sec)   p_kst 8.082000e-01   p_cons 2.396000e-01   p_joint 6.807000e-01

Outputting figure to mutsig2_images.part000000000184/TUSC3.7_1107_10000_0.8082_0.2396_0.6807.png
                gene_name: TUSC3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 31 percent done.
TXLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.758489e-02	ci left: 8.250345e-01	ci right 8.397713e-01	k: 8325	n:10000
Cons ci ratio: 2.254729e-02	ci left: 7.428065e-01	ci right 7.598468e-01	k: 7514	n:10000
KS ci ratio: 2.900308e-02	ci left: 6.367370e-01	ci right 6.555778e-01	k: 6462	n:10000
TXLNB   10000 perm   2 sec   (5420 perm/sec)   p_kst 6.462000e-01   p_cons 7.514000e-01   p_joint 8.325000e-01

Outputting figure to mutsig2_images.part000000000184/TXLNB.7_2091_10000_0.6462_0.7514_0.8325.png
                gene_name: TXLNB
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 33 percent done.
TTC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
Cons ci ratio: 2.637165e-02	ci left: 6.792186e-01	ci right 6.974716e-01	k: 6884	n:10000
KS ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
TTC7A   10000 perm   2 sec   (5350 perm/sec)   p_kst 3.138000e-01   p_cons 6.884000e-01   p_joint 4.803000e-01

Outputting figure to mutsig2_images.part000000000184/TTC7A.6_2657_10000_0.3138_0.6884_0.4803.png
                gene_name: TTC7A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
TTLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
Cons ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
TTLL2   10000 perm   2 sec   (5452 perm/sec)   p_kst 4.097000e-01   p_cons 4.323000e-01   p_joint 5.128000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL2.6_1791_10000_0.4097_0.4323_0.5128.png
                gene_name: TTLL2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 36 percent done.
TXNDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
Cons ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
KS ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
TXNDC3   10000 perm   2 sec   (5936 perm/sec)   p_kst 7.374000e-01   p_cons 6.234000e-01   p_joint 8.348000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC3.6_1827_10000_0.7374_0.6234_0.8348.png
                gene_name: TXNDC3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 38 percent done.
TTLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
Cons ci ratio: 7.656007e-02	ci left: 1.996866e-01	ci right 2.156840e-01	k: 2076	n:10000
KS ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
TTLL1   10000 perm   2 sec   (6612 perm/sec)   p_kst 2.839000e-01   p_cons 2.076000e-01   p_joint 3.497000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL1.5_1308_10000_0.2839_0.2076_0.3497.png
                gene_name: TTLL1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 40 percent done.
TUBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
KS ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
TUBB4   10000 perm   2 sec   (6112 perm/sec)   p_kst 8.114000e-01   p_cons 5.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB4.5_1351_10000_0.8114_0.5066_1.png
                gene_name: TUBB4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
TUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
Cons ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
KS ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
TUT1   10000 perm   2 sec   (5334 perm/sec)   p_kst 2.731000e-01   p_cons 9.281000e-01   p_joint 5.931000e-01

Outputting figure to mutsig2_images.part000000000184/TUT1.5_2775_10000_0.2731_0.9281_0.5931.png
                gene_name: TUT1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 44 percent done.
TXK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
TXK   10000 perm   2 sec   (5721 perm/sec)   p_kst 8.881000e-01   p_cons 4.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TXK.5_1644_10000_0.8881_0.4978_1.png
                gene_name: TXK
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
TTLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
Cons ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
KS ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
TTLL3   10000 perm   2 sec   (5798 perm/sec)   p_kst 3.878000e-01   p_cons 3.338000e-01   p_joint 4.711000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL3.4_2367_10000_0.3878_0.3338_0.4711.png
                gene_name: TTLL3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 47 percent done.
TTLL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
TTLL9   10000 perm   2 sec   (6535 perm/sec)   p_kst 2.108000e-01   p_cons 5.791000e-01   p_joint 4.199000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL9.4_1376_10000_0.2108_0.5791_0.4199.png
                gene_name: TTLL9
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 49 percent done.
TXNDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
TXNDC11   10000 perm   2 sec   (4856 perm/sec)   p_kst 4.344000e-01   p_cons 3.460000e-01   p_joint 4.447000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC11.4_2925_10000_0.4344_0.346_0.4447.png
                gene_name: TXNDC11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 51 percent done.
TXNDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
TXNDC2   10000 perm   2 sec   (6014 perm/sec)   p_kst 5.500000e-02   p_cons 6.499000e-01   p_joint 1.748000e-01

Joint ci ratio: 8.510625e-02	ci left: 9.180406e-02	ci right 1.000139e-01	k: 1917	n:20000
Cons ci ratio: 1.925924e-02	ci left: 6.678557e-01	ci right 6.808936e-01	k: 13488	n:20000
KS ci ratio: 1.127405e-01	ci left: 5.377780e-02	ci right 6.025175e-02	k: 1139	n:20000
TXNDC2   20000 perm   4 sec   (5404 perm/sec)   p_kst 5.695000e-02   p_cons 6.744000e-01   p_joint 9.585000e-02

Joint ci ratio: 5.417955e-02	ci left: 1.445266e-01	ci right 1.526082e-01	k: 4456	n:30000
Cons ci ratio: 1.572171e-02	ci left: 6.691645e-01	ci right 6.798017e-01	k: 20235	n:30000
KS ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
TXNDC2   30000 perm   6 sec   (5176 perm/sec)   p_kst 6.050000e-02   p_cons 6.745000e-01   p_joint 1.485333e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC2.4_1670_30000_0.0605_0.6745_0.14853.png
                gene_name: TXNDC2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 53 percent done.
TXNDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
KS ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
TXNDC5   10000 perm   2 sec   (6013 perm/sec)   p_kst 2.215000e-01   p_cons 1.669000e-01   p_joint 2.930000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC5.4_1339_10000_0.2215_0.1669_0.293.png
                gene_name: TXNDC5
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 55 percent done.
TTC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
Cons ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
KS ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
TTC8   10000 perm   2 sec   (6271 perm/sec)   p_kst 3.417000e-01   p_cons 6.514000e-01   p_joint 4.952000e-01

Outputting figure to mutsig2_images.part000000000184/TTC8.3_1608_10000_0.3417_0.6514_0.4952.png
                gene_name: TTC8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 56 percent done.
TTLL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
KS ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
TTLL11   10000 perm   2 sec   (5842 perm/sec)   p_kst 1.757000e-01   p_cons 3.382000e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL11.3_2517_10000_0.1757_0.3382_0.2181.png
                gene_name: TTLL11
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 58 percent done.
TTLL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
Cons ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
TTLL6   10000 perm   2 sec   (5895 perm/sec)   p_kst 8.760000e-02   p_cons 9.848000e-01   p_joint 2.197000e-01

Joint ci ratio: 5.468557e-02	ci left: 1.987800e-01	ci right 2.100061e-01	k: 4087	n:20000
Cons ci ratio: 3.466146e-03	ci left: 9.828489e-01	ci right 9.863081e-01	k: 19693	n:20000
KS ci ratio: 8.939873e-02	ci left: 8.376601e-02	ci right 9.165433e-02	k: 1753	n:20000
TTLL6   20000 perm   4 sec   (5290 perm/sec)   p_kst 8.765000e-02   p_cons 9.846500e-01   p_joint 2.043500e-01

Outputting figure to mutsig2_images.part000000000184/TTLL6.3_2817_20000_0.08765_0.98465_0.20435.png
                gene_name: TTLL6
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
TUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
Cons ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
KS ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
TUB   10000 perm   2 sec   (6060 perm/sec)   p_kst 9.847000e-01   p_cons 5.078000e-01   p_joint 8.945000e-01

Outputting figure to mutsig2_images.part000000000184/TUB.3_1780_10000_0.9847_0.5078_0.8945.png
                gene_name: TUB
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 62 percent done.
TUBA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
KS ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
TUBA1A   10000 perm   2 sec   (6498 perm/sec)   p_kst 9.436000e-01   p_cons 4.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBA1A.3_1372_10000_0.9436_0.4019_1.png
                gene_name: TUBA1A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TUBA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
Cons ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
KS ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
TUBA1C   10000 perm   2 sec   (6248 perm/sec)   p_kst 4.400000e-02   p_cons 5.190000e-01   p_joint 6.390000e-02

Joint ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
Cons ci ratio: 2.711879e-02	ci left: 5.039460e-01	ci right 5.178509e-01	k: 10218	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
TUBA1C   20000 perm   4 sec   (5540 perm/sec)   p_kst 4.475000e-02   p_cons 5.109000e-01   p_joint 6.955000e-02

Joint ci ratio: 8.078814e-02	ci left: 6.981943e-02	ci right 7.573029e-02	k: 2182	n:30000
Cons ci ratio: 2.216806e-02	ci left: 5.046592e-01	ci right 5.160055e-01	k: 15310	n:30000
KS ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
TUBA1C   30000 perm   6 sec   (5285 perm/sec)   p_kst 4.603333e-02   p_cons 5.103333e-01   p_joint 7.273333e-02

Joint ci ratio: 7.226242e-02	ci left: 6.604343e-02	ci right 7.101942e-02	k: 2740	n:40000
Cons ci ratio: 1.919001e-02	ci left: 5.056381e-01	ci right 5.154604e-01	k: 20422	n:40000
KS ci ratio: 8.890390e-02	ci left: 4.428569e-02	ci right 4.843049e-02	k: 1853	n:40000
TUBA1C   40000 perm   8 sec   (5119 perm/sec)   p_kst 4.632500e-02   p_cons 5.105500e-01   p_joint 6.850000e-02

Outputting figure to mutsig2_images.part000000000184/TUBA1C.3_1366_40000_0.046325_0.51055_0.0685.png
                gene_name: TUBA1C
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 65 percent done.
TUBA4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
Cons ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
TUBA4A   10000 perm   2 sec   (6606 perm/sec)   p_kst 3.404000e-01   p_cons 5.695000e-01   p_joint 3.966000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA4A.3_1363_10000_0.3404_0.5695_0.3966.png
                gene_name: TUBA4A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 67 percent done.
TUBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
Cons ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
KS ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
TUBB1   10000 perm   2 sec   (6374 perm/sec)   p_kst 6.900000e-03   p_cons 4.555000e-01   p_joint 1.370000e-02

Joint ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
Cons ci ratio: 3.046565e-02	ci left: 4.459336e-01	ci right 4.597801e-01	k: 9057	n:20000
KS ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
TUBB1   20000 perm   4 sec   (5688 perm/sec)   p_kst 6.400000e-03   p_cons 4.528500e-01   p_joint 7.650000e-03

Joint ci ratio: 2.520166e-01	ci left: 6.991898e-03	ci right 9.038438e-03	k: 239	n:30000
Cons ci ratio: 2.437240e-02	ci left: 4.573447e-01	ci right 4.686624e-01	k: 13890	n:30000
KS ci ratio: 2.721755e-01	ci left: 5.932465e-03	ci right 7.831589e-03	k: 205	n:30000
TUBB1   30000 perm   6 sec   (5436 perm/sec)   p_kst 6.833333e-03   p_cons 4.630000e-01   p_joint 7.966667e-03

Joint ci ratio: 2.165547e-01	ci left: 7.244952e-03	ci right 9.027564e-03	k: 324	n:40000
Cons ci ratio: 2.116054e-02	ci left: 4.568549e-01	ci right 4.666507e-01	k: 18470	n:40000
KS ci ratio: 2.342847e-01	ci left: 6.135779e-03	ci right 7.787018e-03	k: 277	n:40000
TUBB1   40000 perm   8 sec   (5245 perm/sec)   p_kst 6.925000e-03   p_cons 4.617500e-01   p_joint 8.100000e-03

Joint ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
Cons ci ratio: 1.892253e-02	ci left: 4.574825e-01	ci right 4.662420e-01	k: 23093	n:50000
KS ci ratio: 2.103143e-01	ci left: 6.174213e-03	ci right 7.643912e-03	k: 344	n:50000
TUBB1   50000 perm   10 sec   (5094 perm/sec)   p_kst 6.880000e-03   p_cons 4.618600e-01   p_joint 8.080000e-03

Joint ci ratio: 1.758197e-01	ci left: 7.493942e-03	ci right 8.954226e-03	k: 492	n:60000
Cons ci ratio: 1.725690e-02	ci left: 4.583542e-01	ci right 4.663495e-01	k: 27741	n:60000
KS ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
TUBB1   60000 perm   12 sec   (4963 perm/sec)   p_kst 6.950000e-03   p_cons 4.623500e-01   p_joint 8.200000e-03

Joint ci ratio: 1.528013e-01	ci left: 8.602186e-03	ci right 1.003893e-02	k: 651	n:70000
Cons ci ratio: 1.600833e-02	ci left: 4.576730e-01	ci right 4.650730e-01	k: 32296	n:70000
KS ci ratio: 1.755656e-01	ci left: 6.450383e-03	ci right 7.705285e-03	k: 494	n:70000
TUBB1   70000 perm   14 sec   (4851 perm/sec)   p_kst 7.057143e-03   p_cons 4.613714e-01   p_joint 9.300000e-03

Joint ci ratio: 1.466684e-01	ci left: 8.200565e-03	ci right 9.510425e-03	k: 707	n:80000
Cons ci ratio: 1.498680e-02	ci left: 4.575035e-01	ci right 4.644243e-01	k: 36877	n:80000
KS ci ratio: 1.633154e-01	ci left: 6.565841e-03	ci right 7.745325e-03	k: 571	n:80000
TUBB1   80000 perm   17 sec   (4758 perm/sec)   p_kst 7.137500e-03   p_cons 4.609625e-01   p_joint 8.837500e-03

Joint ci ratio: 1.377145e-01	ci left: 8.307452e-03	ci right 9.546733e-03	k: 802	n:90000
Cons ci ratio: 1.411729e-02	ci left: 4.581389e-01	ci right 4.646636e-01	k: 41526	n:90000
KS ci ratio: 1.528431e-01	ci left: 6.700766e-03	ci right 7.820235e-03	k: 652	n:90000
TUBB1   90000 perm   19 sec   (4668 perm/sec)   p_kst 7.244444e-03   p_cons 4.614000e-01   p_joint 8.911111e-03

Joint ci ratio: 1.354164e-01	ci left: 7.746986e-03	ci right 8.881810e-03	k: 830	n:100000
Cons ci ratio: 1.339043e-02	ci left: 4.583964e-01	ci right 4.645858e-01	k: 46149	n:100000
KS ci ratio: 1.452577e-01	ci left: 6.704594e-03	ci right 7.764289e-03	k: 722	n:100000
TUBB1   100000 perm   22 sec   (4583 perm/sec)   p_kst 7.220000e-03   p_cons 4.614900e-01   p_joint 8.300000e-03

Joint ci ratio: 1.197628e-01	ci left: 9.067470e-03	ci right 1.023133e-02	k: 1060	n:110000
Cons ci ratio: 1.275747e-02	ci left: 4.589231e-01	ci right 4.648244e-01	k: 50806	n:110000
KS ci ratio: 1.413266e-01	ci left: 6.454391e-03	ci right 7.444601e-03	k: 763	n:110000
TUBB1   110000 perm   24 sec   (4503 perm/sec)   p_kst 6.936364e-03   p_cons 4.618727e-01   p_joint 9.636364e-03

Joint ci ratio: 1.158553e-01	ci left: 8.902211e-03	ci right 1.000502e-02	k: 1133	n:120000
Cons ci ratio: 1.220203e-02	ci left: 4.595508e-01	ci right 4.652010e-01	k: 55485	n:120000
KS ci ratio: 1.365911e-01	ci left: 6.350858e-03	ci right 7.289880e-03	k: 817	n:120000
TUBB1   120000 perm   27 sec   (4425 perm/sec)   p_kst 6.808333e-03   p_cons 4.623750e-01   p_joint 9.441667e-03

Joint ci ratio: 1.120725e-01	ci left: 8.800297e-03	ci right 9.852534e-03	k: 1211	n:130000
Cons ci ratio: 1.171822e-02	ci left: 4.598790e-01	ci right 4.653073e-01	k: 60137	n:130000
KS ci ratio: 1.312449e-01	ci left: 6.367890e-03	ci right 7.269705e-03	k: 885	n:130000
TUBB1   130000 perm   30 sec   (4345 perm/sec)   p_kst 6.807692e-03   p_cons 4.625923e-01   p_joint 9.315385e-03

Joint ci ratio: 1.081310e-01	ci left: 8.796859e-03	ci right 9.809335e-03	k: 1301	n:140000
Cons ci ratio: 1.129569e-02	ci left: 4.598141e-01	ci right 4.650446e-01	k: 64740	n:140000
KS ci ratio: 1.266818e-01	ci left: 6.362348e-03	ci right 7.229697e-03	k: 950	n:140000
TUBB1   140000 perm   33 sec   (4258 perm/sec)   p_kst 6.785714e-03   p_cons 4.624286e-01   p_joint 9.292857e-03

Joint ci ratio: 1.035689e-01	ci left: 8.969797e-03	ci right 9.955970e-03	k: 1418	n:150000
Cons ci ratio: 1.092063e-02	ci left: 4.595411e-01	ci right 4.645937e-01	k: 69310	n:150000
KS ci ratio: 1.225637e-01	ci left: 6.358017e-03	ci right 7.194553e-03	k: 1015	n:150000
TUBB1   150000 perm   36 sec   (4186 perm/sec)   p_kst 6.766667e-03   p_cons 4.620667e-01   p_joint 9.453333e-03

Joint ci ratio: 1.000668e-01	ci left: 9.024374e-03	ci right 9.981026e-03	k: 1519	n:160000
Cons ci ratio: 1.058752e-02	ci left: 4.589799e-01	ci right 4.638715e-01	k: 73828	n:160000
KS ci ratio: 1.188228e-01	ci left: 6.354626e-03	ci right 7.163403e-03	k: 1080	n:160000
TUBB1   160000 perm   39 sec   (4117 perm/sec)   p_kst 6.750000e-03   p_cons 4.614250e-01   p_joint 9.493750e-03

Joint ci ratio: 9.713985e-02	ci left: 9.027097e-03	ci right 9.954452e-03	k: 1612	n:170000
Cons ci ratio: 1.027241e-02	ci left: 4.590045e-01	ci right 4.637498e-01	k: 78434	n:170000
KS ci ratio: 1.150515e-01	ci left: 6.391973e-03	ci right 7.177930e-03	k: 1152	n:170000
TUBB1   170000 perm   42 sec   (4052 perm/sec)   p_kst 6.776471e-03   p_cons 4.613765e-01   p_joint 9.482353e-03

Joint ci ratio: 9.473626e-02	ci left: 8.975628e-03	ci right 9.873612e-03	k: 1695	n:180000
Cons ci ratio: 1.020393e-02	ci left: 4.482162e-01	ci right 4.528187e-01	k: 81093	n:180000
KS ci ratio: 1.118942e-01	ci left: 6.393124e-03	ci right 7.156225e-03	k: 1218	n:180000
TUBB1   180000 perm   45 sec   (3988 perm/sec)   p_kst 6.766667e-03   p_cons 4.505167e-01   p_joint 9.416667e-03

Joint ci ratio: 9.234559e-02	ci left: 8.960686e-03	ci right 9.833328e-03	k: 1784	n:190000
Cons ci ratio: 9.720290e-03	ci left: 4.589513e-01	ci right 4.634394e-01	k: 87627	n:190000
KS ci ratio: 1.088980e-01	ci left: 6.404659e-03	ci right 7.147352e-03	k: 1286	n:190000
TUBB1   190000 perm   48 sec   (3929 perm/sec)   p_kst 6.768421e-03   p_cons 4.611947e-01   p_joint 9.389474e-03

Joint ci ratio: 8.986136e-02	ci left: 9.001268e-03	ci right 9.853041e-03	k: 1884	n:200000
Cons ci ratio: 9.469306e-03	ci left: 4.592633e-01	ci right 4.636378e-01	k: 92290	n:200000
KS ci ratio: 1.062883e-01	ci left: 6.395813e-03	ci right 7.118595e-03	k: 1350	n:200000
TUBB1   200000 perm   52 sec   (3870 perm/sec)   p_kst 6.750000e-03   p_cons 4.614500e-01   p_joint 9.420000e-03

Joint ci ratio: 9.220513e-02	ci left: 8.139692e-03	ci right 8.931106e-03	k: 1791	n:210000
Cons ci ratio: 9.237781e-03	ci left: 4.594945e-01	ci right 4.637637e-01	k: 96942	n:210000
KS ci ratio: 1.043039e-01	ci left: 6.332337e-03	ci right 7.033765e-03	k: 1402	n:210000
TUBB1   210000 perm   55 sec   (3813 perm/sec)   p_kst 6.676190e-03   p_cons 4.616286e-01   p_joint 8.528571e-03

Joint ci ratio: 9.006907e-02	ci left: 8.151708e-03	ci right 8.924961e-03	k: 1877	n:220000
Cons ci ratio: 9.030618e-03	ci left: 4.592561e-01	ci right 4.634268e-01	k: 101495	n:220000
KS ci ratio: 1.018294e-01	ci left: 6.350058e-03	ci right 7.035764e-03	k: 1471	n:220000
TUBB1   220000 perm   59 sec   (3757 perm/sec)   p_kst 6.686364e-03   p_cons 4.613409e-01   p_joint 8.531818e-03

Joint ci ratio: 8.807491e-02	ci left: 8.162872e-03	ci right 8.919157e-03	k: 1963	n:230000
Cons ci ratio: 8.840502e-03	ci left: 4.588308e-01	ci right 4.629094e-01	k: 106000	n:230000
KS ci ratio: 9.958821e-02	ci left: 6.357937e-03	ci right 7.028499e-03	k: 1538	n:230000
TUBB1   230000 perm   62 sec   (3704 perm/sec)   p_kst 6.686957e-03   p_cons 4.608696e-01   p_joint 8.534783e-03

Outputting figure to mutsig2_images.part000000000184/TUBB1.3_1372_230000_0.006687_0.46087_0.0085348.png
                gene_name: TUBB1
               theta_stop: 0.100 
                    nperm: 230000 
                     p_ks: 0.0067 
        ci_ks_bounds_left: 0.0064 
       ci_ks_bounds_right: 0.0070 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0089 

Current progress: 69 percent done.
TUBB2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
Cons ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
TUBB2C   10000 perm   2 sec   (6357 perm/sec)   p_kst 7.197000e-01   p_cons 6.285000e-01   p_joint 7.448000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB2C.3_1354_10000_0.7197_0.6285_0.7448.png
                gene_name: TUBB2C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 71 percent done.
TUBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
Cons ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
KS ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
TUBD1   10000 perm   2 sec   (6326 perm/sec)   p_kst 1.553000e-01   p_cons 4.476000e-01   p_joint 2.646000e-01

Outputting figure to mutsig2_images.part000000000184/TUBD1.3_1394_10000_0.1553_0.4476_0.2646.png
                gene_name: TUBD1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 73 percent done.
TUBGCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
Cons ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
TUBGCP2   10000 perm   2 sec   (5121 perm/sec)   p_kst 6.530000e-02   p_cons 2.600000e-03   p_joint 1.480000e-02

Joint ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
Cons ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
KS ci ratio: 1.054301e-01	ci left: 6.123167e-02	ci right 6.809556e-02	k: 1292	n:20000
TUBGCP2   20000 perm   4 sec   (4844 perm/sec)   p_kst 6.460000e-02   p_cons 2.300000e-03   p_joint 7.850000e-03

Joint ci ratio: 2.186510e-01	ci left: 9.440543e-03	ci right 1.178901e-02	k: 317	n:30000
Cons ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
KS ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
TUBGCP2   30000 perm   6 sec   (4683 perm/sec)   p_kst 6.550000e-02   p_cons 2.533333e-03   p_joint 1.056667e-02

Joint ci ratio: 1.975245e-01	ci left: 8.786519e-03	ci right 1.073564e-02	k: 389	n:40000
Cons ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
KS ci ratio: 7.438214e-02	ci left: 6.250497e-02	ci right 6.735842e-02	k: 2596	n:40000
TUBGCP2   40000 perm   9 sec   (4584 perm/sec)   p_kst 6.490000e-02   p_cons 2.600000e-03   p_joint 9.725000e-03

Joint ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
Cons ci ratio: 3.501734e-01	ci left: 2.063146e-03	ci right 2.956181e-03	k: 124	n:50000
KS ci ratio: 6.691894e-02	ci left: 6.206691e-02	ci right 6.638385e-02	k: 3210	n:50000
TUBGCP2   50000 perm   11 sec   (4501 perm/sec)   p_kst 6.420000e-02   p_cons 2.480000e-03   p_joint 9.460000e-03

Joint ci ratio: 1.621204e-01	ci left: 8.867236e-03	ci right 1.044740e-02	k: 578	n:60000
Cons ci ratio: 3.251420e-01	ci left: 2.024388e-03	ci right 2.824957e-03	k: 144	n:60000
KS ci ratio: 6.122610e-02	ci left: 6.198868e-02	ci right 6.592029e-02	k: 3836	n:60000
TUBGCP2   60000 perm   14 sec   (4423 perm/sec)   p_kst 6.393333e-02   p_cons 2.400000e-03   p_joint 9.633333e-03

Joint ci ratio: 1.204706e-01	ci left: 1.400165e-02	ci right 1.581032e-02	k: 1042	n:70000
Cons ci ratio: 2.985276e-01	ci left: 2.090783e-03	ci right 2.837130e-03	k: 171	n:70000
KS ci ratio: 5.671487e-02	ci left: 6.207097e-02	ci right 6.570814e-02	k: 4471	n:70000
TUBGCP2   70000 perm   16 sec   (4348 perm/sec)   p_kst 6.387143e-02   p_cons 2.442857e-03   p_joint 1.488571e-02

Joint ci ratio: 1.116487e-01	ci left: 1.432709e-02	ci right 1.603334e-02	k: 1213	n:80000
Cons ci ratio: 2.782356e-01	ci left: 2.130961e-03	ci right 2.830899e-03	k: 197	n:80000
KS ci ratio: 5.337541e-02	ci left: 6.147413e-02	ci right 6.485764e-02	k: 5052	n:80000
TUBGCP2   80000 perm   19 sec   (4278 perm/sec)   p_kst 6.315000e-02   p_cons 2.462500e-03   p_joint 1.516250e-02

Joint ci ratio: 9.394620e-02	ci left: 1.808546e-02	ci right 1.987906e-02	k: 1707	n:90000
Cons ci ratio: 2.598498e-01	ci left: 2.194708e-03	ci right 2.860225e-03	k: 226	n:90000
KS ci ratio: 5.024564e-02	ci left: 6.175063e-02	ci right 6.494425e-02	k: 5700	n:90000
TUBGCP2   90000 perm   21 sec   (4209 perm/sec)   p_kst 6.333333e-02   p_cons 2.511111e-03   p_joint 1.896667e-02

Joint ci ratio: 9.863149e-02	ci left: 1.478247e-02	ci right 1.632582e-02	k: 1554	n:100000
Cons ci ratio: 2.442073e-01	ci left: 2.256314e-03	ci right 2.893085e-03	k: 256	n:100000
KS ci ratio: 4.770118e-02	ci left: 6.174903e-02	ci right 6.477637e-02	k: 6325	n:100000
TUBGCP2   100000 perm   24 sec   (4141 perm/sec)   p_kst 6.325000e-02   p_cons 2.560000e-03   p_joint 1.554000e-02

Joint ci ratio: 1.079504e-01	ci left: 1.120560e-02	ci right 1.249305e-02	k: 1302	n:110000
Cons ci ratio: 2.360882e-01	ci left: 2.204979e-03	ci right 2.803551e-03	k: 274	n:110000
KS ci ratio: 4.548340e-02	ci left: 6.181404e-02	ci right 6.469995e-02	k: 6957	n:110000
TUBGCP2   110000 perm   27 sec   (4076 perm/sec)   p_kst 6.324545e-02   p_cons 2.490909e-03   p_joint 1.183636e-02

Joint ci ratio: 1.032979e-01	ci left: 1.124540e-02	ci right 1.247836e-02	k: 1422	n:120000
Cons ci ratio: 2.275632e-01	ci left: 2.186068e-03	ci right 2.755069e-03	k: 295	n:120000
KS ci ratio: 4.354873e-02	ci left: 6.187094e-02	ci right 6.463354e-02	k: 7589	n:120000
TUBGCP2   120000 perm   30 sec   (4012 perm/sec)   p_kst 6.324167e-02   p_cons 2.458333e-03   p_joint 1.185000e-02

Joint ci ratio: 9.955908e-02	ci left: 1.119755e-02	ci right 1.237822e-02	k: 1531	n:130000
Cons ci ratio: 2.202482e-01	ci left: 2.163125e-03	ci right 2.705604e-03	k: 315	n:130000
KS ci ratio: 4.191515e-02	ci left: 6.171564e-02	ci right 6.436543e-02	k: 8194	n:130000
TUBGCP2   130000 perm   33 sec   (3957 perm/sec)   p_kst 6.303077e-02   p_cons 2.423077e-03   p_joint 1.177692e-02

Joint ci ratio: 9.261031e-02	ci left: 1.205018e-02	ci right 1.322727e-02	k: 1768	n:140000
Cons ci ratio: 2.132781e-01	ci left: 2.150472e-03	ci right 2.670479e-03	k: 336	n:140000
KS ci ratio: 4.068994e-02	ci left: 6.090500e-02	ci right 6.344174e-02	k: 8703	n:140000
TUBGCP2   140000 perm   36 sec   (3899 perm/sec)   p_kst 6.216429e-02   p_cons 2.400000e-03   p_joint 1.262857e-02

Joint ci ratio: 8.849067e-02	ci left: 1.234156e-02	ci right 1.349071e-02	k: 1936	n:150000
Cons ci ratio: 2.095878e-01	ci left: 2.082864e-03	ci right 2.576688e-03	k: 348	n:150000
KS ci ratio: 3.931632e-02	ci left: 6.093006e-02	ci right 6.338023e-02	k: 9322	n:150000
TUBGCP2   150000 perm   39 sec   (3844 perm/sec)   p_kst 6.214667e-02   p_cons 2.320000e-03   p_joint 1.290667e-02

Joint ci ratio: 8.939514e-02	ci left: 1.134385e-02	ci right 1.241145e-02	k: 1899	n:160000
Cons ci ratio: 2.032795e-01	ci left: 2.083078e-03	ci right 2.560242e-03	k: 370	n:160000
KS ci ratio: 3.809756e-02	ci left: 6.087893e-02	ci right 6.324947e-02	k: 9929	n:160000
TUBGCP2   160000 perm   42 sec   (3791 perm/sec)   p_kst 6.205625e-02   p_cons 2.312500e-03   p_joint 1.186875e-02

Joint ci ratio: 8.753595e-02	ci left: 1.114819e-02	ci right 1.217444e-02	k: 1981	n:170000
Cons ci ratio: 1.975086e-01	ci left: 2.083463e-03	ci right 2.545536e-03	k: 392	n:170000
KS ci ratio: 3.699677e-02	ci left: 6.079986e-02	ci right 6.309746e-02	k: 10530	n:170000
TUBGCP2   170000 perm   45 sec   (3740 perm/sec)   p_kst 6.194118e-02   p_cons 2.305882e-03   p_joint 1.165294e-02

Joint ci ratio: 8.506122e-02	ci left: 1.116482e-02	ci right 1.216211e-02	k: 2098	n:180000
Cons ci ratio: 1.922027e-01	ci left: 2.083976e-03	ci right 2.532295e-03	k: 414	n:180000
KS ci ratio: 3.592088e-02	ci left: 6.093980e-02	ci right 6.317433e-02	k: 11169	n:180000
TUBGCP2   180000 perm   49 sec   (3688 perm/sec)   p_kst 6.205000e-02   p_cons 2.300000e-03   p_joint 1.165556e-02

Joint ci ratio: 8.439913e-02	ci left: 1.075226e-02	ci right 1.170484e-02	k: 2132	n:190000
Cons ci ratio: 1.851909e-01	ci left: 2.134765e-03	ci right 2.575375e-03	k: 446	n:190000
KS ci ratio: 3.495738e-02	ci left: 6.098757e-02	ci right 6.316266e-02	k: 11793	n:190000
TUBGCP2   190000 perm   52 sec   (3639 perm/sec)   p_kst 6.206842e-02   p_cons 2.347368e-03   p_joint 1.122105e-02

Joint ci ratio: 9.037093e-02	ci left: 8.898614e-03	ci right 9.745700e-03	k: 1863	n:200000
Cons ci ratio: 1.807960e-01	ci left: 2.132988e-03	ci right 2.561640e-03	k: 468	n:200000
KS ci ratio: 3.404117e-02	ci left: 6.112057e-02	ci right 6.324214e-02	k: 12435	n:200000
TUBGCP2   200000 perm   56 sec   (3590 perm/sec)   p_kst 6.217500e-02   p_cons 2.340000e-03   p_joint 9.315000e-03

Joint ci ratio: 9.542659e-02	ci left: 7.590865e-03	ci right 8.356143e-03	k: 1673	n:210000
Cons ci ratio: 1.768804e-01	ci left: 2.126940e-03	ci right 2.544130e-03	k: 489	n:210000
KS ci ratio: 3.321238e-02	ci left: 6.117542e-02	ci right 6.324621e-02	k: 13063	n:210000
TUBGCP2   210000 perm   59 sec   (3543 perm/sec)   p_kst 6.220476e-02   p_cons 2.328571e-03   p_joint 7.966667e-03

Joint ci ratio: 8.562737e-02	ci left: 9.032116e-03	ci right 9.844524e-03	k: 2075	n:220000
Cons ci ratio: 1.712054e-01	ci left: 2.173733e-03	ci right 2.585008e-03	k: 522	n:220000
KS ci ratio: 3.243626e-02	ci left: 6.124390e-02	ci right 6.326765e-02	k: 13695	n:220000
TUBGCP2   220000 perm   63 sec   (3496 perm/sec)   p_kst 6.225000e-02   p_cons 2.372727e-03   p_joint 9.431818e-03

Joint ci ratio: 8.812017e-02	ci left: 8.154366e-03	ci right 8.910272e-03	k: 1961	n:230000
Cons ci ratio: 1.684914e-01	ci left: 2.149991e-03	ci right 2.549672e-03	k: 539	n:230000
KS ci ratio: 3.177841e-02	ci left: 6.106526e-02	ci right 6.304144e-02	k: 14271	n:230000
TUBGCP2   230000 perm   67 sec   (3451 perm/sec)   p_kst 6.204783e-02   p_cons 2.343478e-03   p_joint 8.526087e-03

Joint ci ratio: 9.143577e-02	ci left: 7.252351e-03	ci right 7.951286e-03	k: 1823	n:240000
Cons ci ratio: 1.648674e-01	ci left: 2.156238e-03	ci right 2.547602e-03	k: 563	n:240000
KS ci ratio: 3.107765e-02	ci left: 6.120386e-02	ci right 6.314006e-02	k: 14920	n:240000
TUBGCP2   240000 perm   70 sec   (3408 perm/sec)   p_kst 6.216667e-02   p_cons 2.345833e-03   p_joint 7.595833e-03

Joint ci ratio: 9.206188e-02	ci left: 6.868397e-03	ci right 7.535104e-03	k: 1799	n:250000
Cons ci ratio: 1.621601e-01	ci left: 2.142877e-03	ci right 2.524807e-03	k: 582	n:250000
KS ci ratio: 3.051335e-02	ci left: 6.098231e-02	ci right 6.287586e-02	k: 15481	n:250000
TUBGCP2   250000 perm   74 sec   (3363 perm/sec)   p_kst 6.192400e-02   p_cons 2.328000e-03   p_joint 7.196000e-03

Joint ci ratio: 9.754457e-02	ci left: 5.871846e-03	ci right 6.477703e-03	k: 1604	n:260000
Cons ci ratio: 1.583995e-01	ci left: 2.163834e-03	ci right 2.539705e-03	k: 610	n:260000
KS ci ratio: 2.996276e-02	ci left: 6.083922e-02	ci right 6.269365e-02	k: 16058	n:260000
TUBGCP2   260000 perm   78 sec   (3321 perm/sec)   p_kst 6.176154e-02   p_cons 2.346154e-03   p_joint 6.169231e-03

Joint ci ratio: 8.572371e-02	ci left: 7.355606e-03	ci right 8.017991e-03	k: 2074	n:270000
Cons ci ratio: 1.566181e-01	ci left: 2.133497e-03	ci right 2.499539e-03	k: 624	n:270000
KS ci ratio: 2.936763e-02	ci left: 6.099391e-02	ci right 6.281551e-02	k: 16713	n:270000
TUBGCP2   270000 perm   82 sec   (3281 perm/sec)   p_kst 6.190000e-02   p_cons 2.311111e-03   p_joint 7.681481e-03

Joint ci ratio: 8.742820e-02	ci left: 6.816788e-03	ci right 7.443479e-03	k: 1995	n:280000
Cons ci ratio: 1.533399e-01	ci left: 2.149991e-03	ci right 2.510433e-03	k: 651	n:280000
KS ci ratio: 2.883670e-02	ci left: 6.101728e-02	ci right 6.280608e-02	k: 17334	n:280000
TUBGCP2   280000 perm   86 sec   (3241 perm/sec)   p_kst 6.190714e-02   p_cons 2.325000e-03   p_joint 7.125000e-03

Joint ci ratio: 8.867767e-02	ci left: 6.396186e-03	ci right 6.993047e-03	k: 1940	n:290000
Cons ci ratio: 1.517221e-01	ci left: 2.122285e-03	ci right 2.473987e-03	k: 665	n:290000
KS ci ratio: 2.834366e-02	ci left: 6.099821e-02	ci right 6.275538e-02	k: 17943	n:290000
TUBGCP2   290000 perm   91 sec   (3202 perm/sec)   p_kst 6.187241e-02   p_cons 2.293103e-03   p_joint 6.689655e-03

Joint ci ratio: 8.094616e-02	ci left: 7.442565e-03	ci right 8.073667e-03	k: 2326	n:300000
Cons ci ratio: 1.491683e-01	ci left: 2.125323e-03	ci right 2.471071e-03	k: 688	n:300000
KS ci ratio: 2.786707e-02	ci left: 6.101378e-02	ci right 6.274136e-02	k: 18562	n:300000
TUBGCP2   300000 perm   95 sec   (3164 perm/sec)   p_kst 6.187333e-02   p_cons 2.293333e-03   p_joint 7.753333e-03

Joint ci ratio: 7.662867e-02	ci left: 8.050070e-03	ci right 8.694655e-03	k: 2594	n:310000
Cons ci ratio: 1.470500e-01	ci left: 2.118889e-03	ci right 2.458265e-03	k: 708	n:310000
KS ci ratio: 2.740537e-02	ci left: 6.106382e-02	ci right 6.276373e-02	k: 19192	n:310000
TUBGCP2   310000 perm   99 sec   (3128 perm/sec)   p_kst 6.190968e-02   p_cons 2.283871e-03   p_joint 8.367742e-03

Joint ci ratio: 7.563154e-02	ci left: 8.010019e-03	ci right 8.642684e-03	k: 2663	n:320000
Cons ci ratio: 1.441305e-01	ci left: 2.139999e-03	ci right 2.475366e-03	k: 737	n:320000
KS ci ratio: 2.698402e-02	ci left: 6.103333e-02	ci right 6.270586e-02	k: 19797	n:320000
TUBGCP2   320000 perm   103 sec   (3093 perm/sec)   p_kst 6.186563e-02   p_cons 2.303125e-03   p_joint 8.321875e-03

Joint ci ratio: 7.693266e-02	ci left: 7.505636e-03	ci right 8.109116e-03	k: 2575	n:330000
Cons ci ratio: 1.418424e-01	ci left: 2.145276e-03	ci right 2.475682e-03	k: 761	n:330000
KS ci ratio: 2.656834e-02	ci left: 6.106210e-02	ci right 6.270924e-02	k: 20421	n:330000
TUBGCP2   330000 perm   108 sec   (3057 perm/sec)   p_kst 6.188182e-02   p_cons 2.306061e-03   p_joint 7.803030e-03

Joint ci ratio: 7.402894e-02	ci left: 7.876500e-03	ci right 8.484868e-03	k: 2780	n:340000
Cons ci ratio: 1.398383e-01	ci left: 2.144606e-03	ci right 2.469852e-03	k: 783	n:340000
KS ci ratio: 2.618390e-02	ci left: 6.103381e-02	ci right 6.265602e-02	k: 21026	n:340000
TUBGCP2   340000 perm   112 sec   (3024 perm/sec)   p_kst 6.184118e-02   p_cons 2.302941e-03   p_joint 8.176471e-03

Joint ci ratio: 7.294823e-02	ci left: 7.884243e-03	ci right 8.483943e-03	k: 2863	n:350000
Cons ci ratio: 1.379168e-01	ci left: 2.144004e-03	ci right 2.464325e-03	k: 805	n:350000
KS ci ratio: 2.581441e-02	ci left: 6.101299e-02	ci right 6.261142e-02	k: 21633	n:350000
TUBGCP2   350000 perm   117 sec   (2989 perm/sec)   p_kst 6.180857e-02   p_cons 2.300000e-03   p_joint 8.180000e-03

Joint ci ratio: 7.703322e-02	ci left: 6.866458e-03	ci right 7.419298e-03	k: 2570	n:360000
Cons ci ratio: 1.359902e-01	ci left: 2.146149e-03	ci right 2.461948e-03	k: 828	n:360000
KS ci ratio: 2.545708e-02	ci left: 6.100728e-02	ci right 6.258311e-02	k: 22245	n:360000
TUBGCP2   360000 perm   122 sec   (2956 perm/sec)   p_kst 6.179167e-02   p_cons 2.300000e-03   p_joint 7.138889e-03

Joint ci ratio: 7.584670e-02	ci left: 6.895616e-03	ci right 7.441875e-03	k: 2651	n:370000
Cons ci ratio: 1.340633e-01	ci left: 2.150819e-03	ci right 2.462463e-03	k: 852	n:370000
KS ci ratio: 2.511770e-02	ci left: 6.098591e-02	ci right 6.253988e-02	k: 22851	n:370000
TUBGCP2   370000 perm   127 sec   (2924 perm/sec)   p_kst 6.175946e-02   p_cons 2.302703e-03   p_joint 7.164865e-03

Joint ci ratio: 7.472714e-02	ci left: 6.920718e-03	ci right 7.460522e-03	k: 2731	n:380000
Cons ci ratio: 1.319899e-01	ci left: 2.162907e-03	ci right 2.471076e-03	k: 879	n:380000
KS ci ratio: 2.480000e-02	ci left: 6.092655e-02	ci right 6.245909e-02	k: 23442	n:380000
TUBGCP2   380000 perm   131 sec   (2892 perm/sec)   p_kst 6.168947e-02   p_cons 2.313158e-03   p_joint 7.186842e-03

Joint ci ratio: 7.591841e-02	ci left: 6.531887e-03	ci right 7.049841e-03	k: 2647	n:390000
Cons ci ratio: 1.305156e-01	ci left: 2.157046e-03	ci right 2.460681e-03	k: 899	n:390000
KS ci ratio: 2.447832e-02	ci left: 6.094428e-02	ci right 6.245711e-02	k: 24062	n:390000
TUBGCP2   390000 perm   136 sec   (2861 perm/sec)   p_kst 6.169744e-02   p_cons 2.305128e-03   p_joint 6.787179e-03

Joint ci ratio: 7.503157e-02	ci left: 6.523116e-03	ci right 7.034069e-03	k: 2710	n:400000
Cons ci ratio: 1.284614e-01	ci left: 2.173272e-03	ci right 2.474010e-03	k: 928	n:400000
KS ci ratio: 2.417510e-02	ci left: 6.093142e-02	ci right 6.242493e-02	k: 24670	n:400000
TUBGCP2   400000 perm   141 sec   (2830 perm/sec)   p_kst 6.167500e-02   p_cons 2.320000e-03   p_joint 6.775000e-03

Joint ci ratio: 7.410789e-02	ci left: 6.526777e-03	ci right 7.031451e-03	k: 2778	n:410000
Cons ci ratio: 1.267002e-01	ci left: 2.181657e-03	ci right 2.479105e-03	k: 954	n:410000
KS ci ratio: 2.388691e-02	ci left: 6.089990e-02	ci right 6.237460e-02	k: 25270	n:410000
TUBGCP2   410000 perm   146 sec   (2799 perm/sec)   p_kst 6.163415e-02   p_cons 2.326829e-03   p_joint 6.775610e-03

Joint ci ratio: 7.332128e-02	ci left: 6.511599e-03	ci right 7.009528e-03	k: 2838	n:420000
Cons ci ratio: 1.255236e-01	ci left: 2.171217e-03	ci right 2.464288e-03	k: 972	n:420000
KS ci ratio: 2.359858e-02	ci left: 6.091970e-02	ci right 6.237683e-02	k: 25891	n:420000
TUBGCP2   420000 perm   152 sec   (2770 perm/sec)   p_kst 6.164524e-02   p_cons 2.314286e-03   p_joint 6.757143e-03

Joint ci ratio: 7.364108e-02	ci left: 6.305354e-03	ci right 6.789704e-03	k: 2814	n:430000
Cons ci ratio: 1.243163e-01	ci left: 2.163528e-03	ci right 2.452546e-03	k: 991	n:430000
KS ci ratio: 2.334438e-02	ci left: 6.082073e-02	ci right 6.225961e-02	k: 26461	n:430000
TUBGCP2   430000 perm   157 sec   (2741 perm/sec)   p_kst 6.153721e-02   p_cons 2.304651e-03   p_joint 6.544186e-03

Joint ci ratio: 7.449017e-02	ci left: 6.021487e-03	ci right 6.489596e-03	k: 2751	n:440000
Cons ci ratio: 1.225373e-01	ci left: 2.178233e-03	ci right 2.464748e-03	k: 1020	n:440000
KS ci ratio: 2.308230e-02	ci left: 6.080545e-02	ci right 6.222760e-02	k: 27066	n:440000
TUBGCP2   440000 perm   162 sec   (2714 perm/sec)   p_kst 6.151364e-02   p_cons 2.318182e-03   p_joint 6.252273e-03

Joint ci ratio: 7.374419e-02	ci left: 6.009813e-03	ci right 6.472135e-03	k: 2807	n:450000
Cons ci ratio: 1.211219e-01	ci left: 2.181536e-03	ci right 2.464933e-03	k: 1044	n:450000
KS ci ratio: 2.283721e-02	ci left: 6.074894e-02	ci right 6.215449e-02	k: 27652	n:450000
TUBGCP2   450000 perm   168 sec   (2685 perm/sec)   p_kst 6.144889e-02   p_cons 2.320000e-03   p_joint 6.237778e-03

Joint ci ratio: 7.287948e-02	ci left: 6.022148e-03	ci right 6.479756e-03	k: 2874	n:460000
Cons ci ratio: 1.193633e-01	ci left: 2.199476e-03	ci right 2.480764e-03	k: 1075	n:460000
KS ci ratio: 2.257379e-02	ci left: 6.082688e-02	ci right 6.221778e-02	k: 28299	n:460000
TUBGCP2   460000 perm   173 sec   (2659 perm/sec)   p_kst 6.151957e-02   p_cons 2.336957e-03   p_joint 6.247826e-03

Joint ci ratio: 7.056321e-02	ci left: 6.293144e-03	ci right 6.755524e-03	k: 3065	n:470000
Cons ci ratio: 1.178929e-01	ci left: 2.208422e-03	ci right 2.487131e-03	k: 1102	n:470000
KS ci ratio: 2.233903e-02	ci left: 6.079999e-02	ci right 6.217564e-02	k: 28898	n:470000
TUBGCP2   470000 perm   178 sec   (2635 perm/sec)   p_kst 6.148511e-02   p_cons 2.344681e-03   p_joint 6.521277e-03

Joint ci ratio: 6.986064e-02	ci left: 6.288935e-03	ci right 6.746219e-03	k: 3127	n:480000
Cons ci ratio: 1.164755e-01	ci left: 2.217015e-03	ci right 2.493214e-03	k: 1129	n:480000
KS ci ratio: 2.210705e-02	ci left: 6.079709e-02	ci right 6.215821e-02	k: 29508	n:480000
TUBGCP2   480000 perm   184 sec   (2610 perm/sec)   p_kst 6.147500e-02   p_cons 2.352083e-03   p_joint 6.514583e-03

Joint ci ratio: 6.890737e-02	ci left: 6.335065e-03	ci right 6.789166e-03	k: 3214	n:490000
Cons ci ratio: 1.154084e-01	ci left: 2.213384e-03	ci right 2.486431e-03	k: 1150	n:490000
KS ci ratio: 2.188216e-02	ci left: 6.079438e-02	ci right 6.214142e-02	k: 30118	n:490000
TUBGCP2   490000 perm   189 sec   (2587 perm/sec)   p_kst 6.146531e-02   p_cons 2.346939e-03   p_joint 6.559184e-03

Joint ci ratio: 6.712775e-02	ci left: 6.546537e-03	ci right 7.003206e-03	k: 3386	n:500000
Cons ci ratio: 1.144680e-01	ci left: 2.206023e-03	ci right 2.475795e-03	k: 1169	n:500000
KS ci ratio: 2.166136e-02	ci left: 6.080578e-02	ci right 6.213931e-02	k: 30735	n:500000
TUBGCP2   500000 perm   195 sec   (2562 perm/sec)   p_kst 6.147000e-02   p_cons 2.338000e-03   p_joint 6.772000e-03

Joint ci ratio: 6.750442e-02	ci left: 6.346824e-03	ci right 6.792143e-03	k: 3349	n:510000
Cons ci ratio: 1.137903e-01	ci left: 2.189434e-03	ci right 2.455486e-03	k: 1183	n:510000
KS ci ratio: 2.144638e-02	ci left: 6.082070e-02	ci right 6.214115e-02	k: 31354	n:510000
TUBGCP2   510000 perm   201 sec   (2540 perm/sec)   p_kst 6.147843e-02   p_cons 2.319608e-03   p_joint 6.566667e-03

Joint ci ratio: 7.274074e-02	ci left: 5.351763e-03	ci right 5.757622e-03	k: 2887	n:520000
Cons ci ratio: 1.130771e-01	ci left: 2.175356e-03	ci right 2.437930e-03	k: 1198	n:520000
KS ci ratio: 2.122566e-02	ci left: 6.090017e-02	ci right 6.220857e-02	k: 32007	n:520000
TUBGCP2   520000 perm   207 sec   (2517 perm/sec)   p_kst 6.155192e-02   p_cons 2.303846e-03   p_joint 5.551923e-03

Joint ci ratio: 6.547827e-02	ci left: 6.496977e-03	ci right 6.938630e-03	k: 3559	n:530000
Cons ci ratio: 1.121921e-01	ci left: 2.169150e-03	ci right 2.428791e-03	k: 1217	n:530000
KS ci ratio: 2.102121e-02	ci left: 6.092413e-02	ci right 6.222029e-02	k: 32632	n:530000
TUBGCP2   530000 perm   212 sec   (2496 perm/sec)   p_kst 6.156981e-02   p_cons 2.296226e-03   p_joint 6.715094e-03

Joint ci ratio: 6.487969e-02	ci left: 6.496893e-03	ci right 6.934351e-03	k: 3625	n:540000
Cons ci ratio: 1.114179e-01	ci left: 2.159581e-03	ci right 2.416175e-03	k: 1234	n:540000
KS ci ratio: 2.082457e-02	ci left: 6.093621e-02	ci right 6.222035e-02	k: 33251	n:540000
TUBGCP2   540000 perm   218 sec   (2474 perm/sec)   p_kst 6.157593e-02   p_cons 2.285185e-03   p_joint 6.712963e-03

Joint ci ratio: 6.434111e-02	ci left: 6.487884e-03	ci right 6.920973e-03	k: 3686	n:550000
Cons ci ratio: 1.100445e-01	ci left: 2.175120e-03	ci right 2.430168e-03	k: 1265	n:550000
KS ci ratio: 2.063658e-02	ci left: 6.092981e-02	ci right 6.220209e-02	k: 33860	n:550000
TUBGCP2   550000 perm   224 sec   (2453 perm/sec)   p_kst 6.156364e-02   p_cons 2.300000e-03   p_joint 6.701818e-03

Joint ci ratio: 6.393605e-02	ci left: 6.454608e-03	ci right 6.882663e-03	k: 3733	n:560000
Cons ci ratio: 1.090583e-01	ci left: 2.176225e-03	ci right 2.428968e-03	k: 1288	n:560000
KS ci ratio: 2.045076e-02	ci left: 6.093968e-02	ci right 6.220057e-02	k: 34478	n:560000
TUBGCP2   560000 perm   230 sec   (2432 perm/sec)   p_kst 6.156786e-02   p_cons 2.300000e-03   p_joint 6.666071e-03

Joint ci ratio: 6.334486e-02	ci left: 6.462222e-03	ci right 6.886675e-03	k: 3803	n:570000
Cons ci ratio: 1.077285e-01	ci left: 2.192665e-03	ci right 2.444016e-03	k: 1320	n:570000
KS ci ratio: 2.026679e-02	ci left: 6.096672e-02	ci right 6.221669e-02	k: 35106	n:570000
TUBGCP2   570000 perm   236 sec   (2412 perm/sec)   p_kst 6.158947e-02   p_cons 2.315789e-03   p_joint 6.671930e-03

Joint ci ratio: 6.255879e-02	ci left: 6.513722e-03	ci right 6.936055e-03	k: 3899	n:580000
Cons ci ratio: 1.069224e-01	ci left: 2.188417e-03	ci right 2.437286e-03	k: 1340	n:580000
KS ci ratio: 2.009219e-02	ci left: 6.096713e-02	ci right 6.220622e-02	k: 35719	n:580000
TUBGCP2   580000 perm   243 sec   (2390 perm/sec)   p_kst 6.158448e-02   p_cons 2.310345e-03   p_joint 6.722414e-03

Joint ci ratio: 6.208343e-02	ci left: 6.503429e-03	ci right 6.921776e-03	k: 3959	n:590000
Cons ci ratio: 1.063694e-01	ci left: 2.174420e-03	ci right 2.420338e-03	k: 1354	n:590000
KS ci ratio: 1.991472e-02	ci left: 6.100975e-02	ci right 6.223863e-02	k: 36357	n:590000
TUBGCP2   590000 perm   249 sec   (2370 perm/sec)   p_kst 6.162203e-02   p_cons 2.294915e-03   p_joint 6.710169e-03

Joint ci ratio: 6.189057e-02	ci left: 6.436052e-03	ci right 6.848733e-03	k: 3984	n:600000
Cons ci ratio: 1.052867e-01	ci left: 2.183612e-03	ci right 2.427900e-03	k: 1382	n:600000
KS ci ratio: 1.975013e-02	ci left: 6.100288e-02	ci right 6.222135e-02	k: 36966	n:600000
TUBGCP2   600000 perm   255 sec   (2350 perm/sec)   p_kst 6.161000e-02   p_cons 2.303333e-03   p_joint 6.640000e-03

Joint ci ratio: 6.131583e-02	ci left: 6.451602e-03	ci right 6.861301e-03	k: 4059	n:610000
Cons ci ratio: 1.045712e-01	ci left: 2.178145e-03	ci right 2.420064e-03	k: 1401	n:610000
KS ci ratio: 1.958539e-02	ci left: 6.102076e-02	ci right 6.222931e-02	k: 37590	n:610000
TUBGCP2   610000 perm   262 sec   (2331 perm/sec)   p_kst 6.162295e-02   p_cons 2.296721e-03   p_joint 6.654098e-03

Joint ci ratio: 6.694389e-02	ci left: 5.315829e-03	ci right 5.685589e-03	k: 3409	n:620000
Cons ci ratio: 1.039067e-01	ci left: 2.171288e-03	ci right 2.410820e-03	k: 1419	n:620000
KS ci ratio: 1.942280e-02	ci left: 6.104934e-02	ci right 6.224831e-02	k: 38221	n:620000
TUBGCP2   620000 perm   268 sec   (2312 perm/sec)   p_kst 6.164677e-02   p_cons 2.288710e-03   p_joint 5.498387e-03

Joint ci ratio: 6.633351e-02	ci left: 5.329785e-03	ci right 5.697007e-03	k: 3472	n:630000
Cons ci ratio: 1.031470e-01	ci left: 2.169293e-03	ci right 2.406749e-03	k: 1440	n:630000
KS ci ratio: 1.927292e-02	ci left: 6.102491e-02	ci right 6.221404e-02	k: 38819	n:630000
TUBGCP2   630000 perm   275 sec   (2293 perm/sec)   p_kst 6.161746e-02   p_cons 2.285714e-03   p_joint 5.511111e-03

Joint ci ratio: 6.583319e-02	ci left: 5.327951e-03	ci right 5.692172e-03	k: 3525	n:640000
Cons ci ratio: 1.020892e-01	ci left: 2.181071e-03	ci right 2.417220e-03	k: 1470	n:640000
KS ci ratio: 1.912207e-02	ci left: 6.102772e-02	ci right 6.220750e-02	k: 39434	n:640000
TUBGCP2   640000 perm   281 sec   (2275 perm/sec)   p_kst 6.161563e-02   p_cons 2.296875e-03   p_joint 5.507812e-03

Joint ci ratio: 5.925620e-02	ci left: 6.489468e-03	ci right 6.887255e-03	k: 4346	n:650000
Cons ci ratio: 1.014024e-01	ci left: 2.177502e-03	ci right 2.411585e-03	k: 1490	n:650000
KS ci ratio: 1.898632e-02	ci left: 6.096003e-02	ci right 6.213004e-02	k: 40003	n:650000
TUBGCP2   650000 perm   288 sec   (2256 perm/sec)   p_kst 6.154308e-02   p_cons 2.292308e-03   p_joint 6.686154e-03

Joint ci ratio: 5.881146e-02	ci left: 6.489667e-03	ci right 6.884379e-03	k: 4412	n:660000
Cons ci ratio: 1.006625e-01	ci left: 2.177000e-03	ci right 2.409221e-03	k: 1512	n:660000
KS ci ratio: 1.883686e-02	ci left: 6.099548e-02	ci right 6.215686e-02	k: 40639	n:660000
TUBGCP2   660000 perm   295 sec   (2238 perm/sec)   p_kst 6.157424e-02   p_cons 2.290909e-03   p_joint 6.684848e-03

Joint ci ratio: 5.855452e-02	ci left: 6.450157e-03	ci right 6.840694e-03	k: 4451	n:670000
Cons ci ratio: 1.000367e-01	ci left: 2.172154e-03	ci right 2.402332e-03	k: 1531	n:670000
KS ci ratio: 1.868918e-02	ci left: 6.104031e-02	ci right 6.219333e-02	k: 41282	n:670000
TUBGCP2   670000 perm   302 sec   (2221 perm/sec)   p_kst 6.161493e-02   p_cons 2.285075e-03   p_joint 6.643284e-03

Joint ci ratio: 5.809940e-02	ci left: 6.456742e-03	ci right 6.844537e-03	k: 4521	n:680000
Cons ci ratio: 9.945448e-02	ci left: 2.166021e-03	ci right 2.394135e-03	k: 1549	n:680000
KS ci ratio: 1.855295e-02	ci left: 6.103408e-02	ci right 6.217849e-02	k: 41891	n:680000
TUBGCP2   680000 perm   308 sec   (2204 perm/sec)   p_kst 6.160441e-02   p_cons 2.277941e-03   p_joint 6.648529e-03

Outputting figure to mutsig2_images.part000000000184/TUBGCP2.3_2777_680000_0.061604_0.0022779_0.0066485.png
                gene_name: TUBGCP2
               theta_stop: 0.099 
                    nperm: 680000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.0023 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0024 
                  p_joint: 0.0066 
     ci_joint_bounds_left: 0.0065 
    ci_joint_bounds_right: 0.0068 

Current progress: 75 percent done.
TUBGCP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
TUBGCP3   10000 perm   2 sec   (5764 perm/sec)   p_kst 1.238000e-01   p_cons 7.202000e-01   p_joint 2.507000e-01

Joint ci ratio: 5.965671e-02	ci left: 1.722267e-01	ci right 1.828672e-01	k: 3550	n:20000
Cons ci ratio: 1.681227e-02	ci left: 7.248464e-01	ci right 7.371864e-01	k: 14621	n:20000
KS ci ratio: 7.213646e-02	ci left: 1.239898e-01	ci right 1.333184e-01	k: 2572	n:20000
TUBGCP3   20000 perm   4 sec   (5191 perm/sec)   p_kst 1.286000e-01   p_cons 7.310500e-01   p_joint 1.775000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP3.3_2812_20000_0.1286_0.73105_0.1775.png
                gene_name: TUBGCP3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 76 percent done.
TULP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.021851e-02	ci left: 4.772584e-01	ci right 4.969491e-01	k: 4871	n:10000
Cons ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
KS ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
TULP3   10000 perm   2 sec   (6274 perm/sec)   p_kst 3.392000e-01   p_cons 7.985000e-01   p_joint 4.871000e-01

Outputting figure to mutsig2_images.part000000000184/TULP3.3_1574_10000_0.3392_0.7985_0.4871.png
                gene_name: TULP3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
TWF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
Cons ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
KS ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
TWF2   10000 perm   2 sec   (6372 perm/sec)   p_kst 3.744000e-01   p_cons 2.280000e-01   p_joint 9.407000e-01

Outputting figure to mutsig2_images.part000000000184/TWF2.3_1086_10000_0.3744_0.228_0.9407.png
                gene_name: TWF2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 80 percent done.
TXNDC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
Cons ci ratio: 4.075338e-02	ci left: 4.706645e-01	ci right 4.903468e-01	k: 4805	n:10000
KS ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
TXNDC15   10000 perm   2 sec   (6189 perm/sec)   p_kst 5.955000e-01   p_cons 4.805000e-01   p_joint 9.788000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC15.3_1103_10000_0.5955_0.4805_0.9788.png
                gene_name: TXNDC15
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
TXNDC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
Cons ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
KS ci ratio: 2.058822e-02	ci left: 7.755997e-01	ci right 7.918347e-01	k: 7838	n:10000
TXNDC16   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.838000e-01   p_cons 5.579000e-01   p_joint 7.654000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC16.3_2554_10000_0.7838_0.5579_0.7654.png
                gene_name: TXNDC16
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 84 percent done.
TTC7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.598880e-02	ci left: 8.503927e-01	ci right 8.641985e-01	k: 8574	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
TTC7B   10000 perm   2 sec   (6175 perm/sec)   p_kst 7.030000e-01   p_cons 8.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC7B.2_2612_10000_0.703_0.8574_1.png
                gene_name: TTC7B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
TTLL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
Cons ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
KS ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
TTLL10   10000 perm   2 sec   (6388 perm/sec)   p_kst 4.664000e-01   p_cons 9.159000e-01   p_joint 7.629000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL10.2_2107_10000_0.4664_0.9159_0.7629.png
                gene_name: TTLL10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 87 percent done.
TTLL12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
Cons ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
KS ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
TTLL12   10000 perm   2 sec   (6633 perm/sec)   p_kst 7.618000e-01   p_cons 4.500000e-01   p_joint 5.049000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL12.2_1991_10000_0.7618_0.45_0.5049.png
                gene_name: TTLL12
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 89 percent done.
TTPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
TTPA   10000 perm   2 sec   (6178 perm/sec)   p_kst 3.859000e-01   p_cons 8.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTPA.2_857_10000_0.3859_0.8338_1.png
                gene_name: TTPA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TTYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
TTYH1   10000 perm   1 sec   (6694 perm/sec)   p_kst 1.955000e-01   p_cons 4.130000e-02   p_joint 3.560000e-02

Joint ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
Cons ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
KS ci ratio: 5.602359e-02	ci left: 1.911114e-01	ci right 2.021769e-01	k: 3932	n:20000
TTYH1   20000 perm   3 sec   (5912 perm/sec)   p_kst 1.966000e-01   p_cons 4.165000e-02   p_joint 7.415000e-02

Joint ci ratio: 7.923314e-02	ci left: 7.243676e-02	ci right 7.844577e-02	k: 2262	n:30000
Cons ci ratio: 1.090398e-01	ci left: 3.904373e-02	ci right 4.357898e-02	k: 1238	n:30000
KS ci ratio: 4.562057e-02	ci left: 1.929748e-01	ci right 2.020172e-01	k: 5924	n:30000
TTYH1   30000 perm   5 sec   (5612 perm/sec)   p_kst 1.974667e-01   p_cons 4.126667e-02   p_joint 7.540000e-02

Joint ci ratio: 6.297923e-02	ci left: 8.551230e-02	ci right 9.109763e-02	k: 3531	n:40000
Cons ci ratio: 9.360719e-02	ci left: 4.003064e-02	ci right 4.398620e-02	k: 1679	n:40000
KS ci ratio: 3.964629e-02	ci left: 1.924916e-01	ci right 2.003025e-01	k: 7855	n:40000
TTYH1   40000 perm   7 sec   (5411 perm/sec)   p_kst 1.963750e-01   p_cons 4.197500e-02   p_joint 8.827500e-02

Outputting figure to mutsig2_images.part000000000184/TTYH1.2_1485_40000_0.19637_0.041975_0.088275.png
                gene_name: TTYH1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 93 percent done.
TUBA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
Cons ci ratio: 3.755631e-03	ci left: 9.889489e-01	ci right 9.927569e-01	k: 9910	n:10000
KS ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
TUBA3E   10000 perm   1 sec   (6790 perm/sec)   p_kst 2.712000e-01   p_cons 9.910000e-01   p_joint 9.244000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3E.2_1373_10000_0.2712_0.991_0.9244.png
                gene_name: TUBA3E
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
TUBB2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
KS ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
TUBB2A   10000 perm   1 sec   (6800 perm/sec)   p_kst 9.476000e-01   p_cons 9.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB2A.2_1354_10000_0.9476_0.9831_1.png
                gene_name: TUBB2A
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
TUBG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
Cons ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
KS ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
TUBG1   10000 perm   1 sec   (6740 perm/sec)   p_kst 2.673000e-01   p_cons 7.272000e-01   p_joint 3.888000e-01

Outputting figure to mutsig2_images.part000000000184/TUBG1.2_1400_10000_0.2673_0.7272_0.3888.png
                gene_name: TUBG1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 98 percent done.
TUFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
KS ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
TUFM   10000 perm   1 sec   (6990 perm/sec)   p_kst 4.867000e-01   p_cons 2.325000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUFM.2_1408_10000_0.4867_0.2325_1.png
                gene_name: TUFM
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000184
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 184 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 4422663: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000185> was used as the working directory.
Started at Wed Oct 24 18:10:21 2012
Results reported at Wed Oct 24 21:12:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000185.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000185.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 185  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000185.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11072.33 sec.
    Max Memory :      5419 MB
    Max Swap   :      7687 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
185
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 185
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 185: processing genes 16647 - 16737
Calculating significance of each gene.
Using projection method.
16647	TXNDC9	1
16648	TXNIP	9.335647e-01
16649	TXNL1	1
16650	TXNL4A	2.119967e-01
16651	TXNL4B	3.180808e-01
16652	TXNRD1	1
16653	TXNRD2	9.168580e-01
16654	TXNRD3IT1	1
16655	TYK2	9.742811e-01
16656	TYMP	6.982682e-01
16657	TYMS	1
16658	TYR	1.530850e-04
16659	TYRO3	9.878992e-01
16660	TYROBP	1
16661	TYRP1	3.447357e-01
16662	TYSND1	8.614344e-01
16663	TYW1	9.375277e-01
16664	TYW1B	4.602464e-01
16665	TYW3	1
16666	U2AF1	5.567968e-03
16667	U2AF1L4	4.949430e-01
16668	U2AF2	7.433570e-02
16669	UACA	2.514537e-01
16670	UAP1	3.169878e-01
16671	UAP1L1	1
16672	UBA1	1
16673	UBA2	5.676041e-01
16674	UBA3	7.599525e-01
16675	UBA5	1
16676	UBA52	1
16677	UBA6	5.413640e-02
16678	UBA7	8.683074e-01
16679	UBAC1	4.124474e-01
16680	UBAC2	7.867803e-01
16681	UBAP1	3.462408e-01
16682	UBAP2	1
16683	UBAP2L	5.656234e-01
16684	UBASH3A	2.984237e-01
16685	UBASH3B	9.201600e-01
16686	UBB	1
16687	UBC	4.534479e-01
16688	UBD	8.603298e-02
16689	UBE2A	2.410983e-02
16690	UBE2B	1
16691	UBE2C	1
16692	UBE2CBP	6.423108e-02
16693	UBE2D1	1
16694	UBE2D2	3.501229e-01
16695	UBE2D3	1.609991e-02
16696	UBE2D4	6.810118e-02
16697	UBE2E1	1
16698	UBE2E2	3.723916e-01
16699	UBE2E3	4.060227e-01
16700	UBE2F	1
16701	UBE2G1	1
16702	UBE2G2	5.673932e-01
16703	UBE2H	6.798749e-01
16704	UBE2I	6.163321e-01
16705	UBE2J1	3.251004e-01
16706	UBE2J2	1
16707	UBE2K	6.543632e-01
16708	UBE2L3	1
16709	UBE2L6	4.261508e-01
16710	UBE2M	5.649337e-01
16711	UBE2N	4.322556e-01
16712	UBE2NL	5.950803e-03
16713	UBE2O	7.785008e-01
16714	UBE2Q1	9.169880e-01
16715	UBE2Q2	2.231435e-01
16716	UBE2R2	4.819213e-01
16717	UBE2S	1
16718	UBE2T	3.013854e-01
16719	UBE2U	1
16720	UBE2V1	1
16721	UBE2V2	2.948646e-01
16722	UBE2W	4.790113e-01
16723	UBE2Z	1
16724	UBE3A	2.216242e-01
16725	UBE3B	8.329739e-01
16726	UBE3C	6.228331e-01
16727	UBE4A	9.873148e-01
16728	UBE4B	9.911281e-01
16729	UBFD1	1.656320e-01
16730	UBIAD1	4.563979e-01
16731	UBL3	1
16732	UBL4A	1
16733	UBL4B	1
16734	UBL5	1
16735	UBL7	1
16736	UBLCP1	1
In gene UBN1 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 3473    n = 1	mu =   3.35e-07
16737	UBN1	9.943732e-01
Done

Running MutSig 2:
Scatter job 185: processing genes 16647 - 16737
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UBA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
Cons ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
KS ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
UBA6   10000 perm   2 sec   (4302 perm/sec)   p_kst 2.884000e-01   p_cons 4.803000e-01   p_joint 4.646000e-01

Outputting figure to mutsig2_images.part000000000185/UBA6.15_3291_10000_0.2884_0.4803_0.4646.png
                gene_name: UBA6
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 2 percent done.
TYR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
KS ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
TYR   10000 perm   2 sec   (5014 perm/sec)   p_kst 8.874000e-01   p_cons 9.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TYR.14_1610_10000_0.8874_0.964_1.png
                gene_name: TYR
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
UACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
KS ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
UACA   10000 perm   2 sec   (4530 perm/sec)   p_kst 2.574000e-01   p_cons 6.040000e-02   p_joint 9.320000e-02

Joint ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
Cons ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
KS ci ratio: 4.737165e-02	ci left: 2.489703e-01	ci right 2.611010e-01	k: 5100	n:20000
UACA   20000 perm   5 sec   (4120 perm/sec)   p_kst 2.550000e-01   p_cons 6.070000e-02   p_joint 9.840000e-02

Joint ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
Cons ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
KS ci ratio: 3.868738e-02	ci left: 2.500089e-01	ci right 2.599053e-01	k: 7648	n:30000
UACA   30000 perm   8 sec   (3939 perm/sec)   p_kst 2.549333e-01   p_cons 5.993333e-02   p_joint 6.966667e-02

Outputting figure to mutsig2_images.part000000000185/UACA.13_4370_30000_0.25493_0.059933_0.069667.png
                gene_name: UACA
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.073 

Current progress: 7 percent done.
UBE3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
Cons ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
KS ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
UBE3C   10000 perm   2 sec   (4714 perm/sec)   p_kst 4.255000e-01   p_cons 4.724000e-01   p_joint 6.597000e-01

Outputting figure to mutsig2_images.part000000000185/UBE3C.11_3344_10000_0.4255_0.4724_0.6597.png
                gene_name: UBE3C
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 9 percent done.
UBC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
UBC   10000 perm   2 sec   (4968 perm/sec)   p_kst 7.210000e-02   p_cons 3.288000e-01   p_joint 9.330000e-02

Joint ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
Cons ci ratio: 3.992850e-02	ci left: 3.186588e-01	ci right 3.316921e-01	k: 6503	n:20000
KS ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
UBC   20000 perm   4 sec   (4538 perm/sec)   p_kst 7.120000e-02   p_cons 3.251500e-01   p_joint 7.750000e-02

Joint ci ratio: 7.793689e-02	ci left: 7.472782e-02	ci right 8.082091e-02	k: 2332	n:30000
Cons ci ratio: 3.265604e-02	ci left: 3.191362e-01	ci right 3.297645e-01	k: 9733	n:30000
KS ci ratio: 8.172050e-02	ci left: 6.831499e-02	ci right 7.416837e-02	k: 2136	n:30000
UBC   30000 perm   7 sec   (4354 perm/sec)   p_kst 7.120000e-02   p_cons 3.244333e-01   p_joint 7.773333e-02

Outputting figure to mutsig2_images.part000000000185/UBC.10_2062_30000_0.0712_0.32443_0.077733.png
                gene_name: UBC
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 11 percent done.
UBAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
UBAP2L   10000 perm   2 sec   (4564 perm/sec)   p_kst 7.824000e-01   p_cons 2.333000e-01   p_joint 5.266000e-01

Outputting figure to mutsig2_images.part000000000185/UBAP2L.9_3422_10000_0.7824_0.2333_0.5266.png
                gene_name: UBAP2L
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 13 percent done.
TYRO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
Cons ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
KS ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
TYRO3   10000 perm   2 sec   (4944 perm/sec)   p_kst 2.174000e-01   p_cons 8.663000e-01   p_joint 3.586000e-01

Outputting figure to mutsig2_images.part000000000185/TYRO3.8_2749_10000_0.2174_0.8663_0.3586.png
                gene_name: TYRO3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
UBE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
KS ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
UBE3A   10000 perm   2 sec   (5014 perm/sec)   p_kst 8.052000e-01   p_cons 4.775000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000185/UBE3A.8_2696_10000_0.8052_0.4775_0.7965.png
                gene_name: UBE3A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 18 percent done.
UBE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
Cons ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
UBE3B   10000 perm   2 sec   (4692 perm/sec)   p_kst 5.729000e-01   p_cons 3.479000e-01   p_joint 5.774000e-01

Outputting figure to mutsig2_images.part000000000185/UBE3B.7_3311_10000_0.5729_0.3479_0.5774.png
                gene_name: UBE3B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 20 percent done.
U2AF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
U2AF1   10000 perm   1 sec   (7159 perm/sec)   p_kst 2.000000e-04   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
U2AF1   20000 perm   3 sec   (6279 perm/sec)   p_kst 2.000000e-04   p_cons 1.300000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
U2AF1   30000 perm   5 sec   (5897 perm/sec)   p_kst 2.000000e-04   p_cons 1.400000e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
KS ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
U2AF1   40000 perm   7 sec   (5660 perm/sec)   p_kst 1.500000e-04   p_cons 1.175000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 4.935574e-01	ci left: 9.508290e-04	ci right 1.589346e-03	k: 62	n:50000
KS ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
U2AF1   50000 perm   9 sec   (5508 perm/sec)   p_kst 2.600000e-04   p_cons 1.240000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 4.616953e-01	ci left: 9.243052e-04	ci right 1.492383e-03	k: 71	n:60000
KS ci ratio: 9.505970e-01	ci left: 1.524305e-04	ci right 4.330139e-04	k: 16	n:60000
U2AF1   60000 perm   11 sec   (5341 perm/sec)   p_kst 2.666667e-04   p_cons 1.183333e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.274473e-01	ci left: 9.445220e-04	ci right 1.469662e-03	k: 83	n:70000
KS ci ratio: 8.552797e-01	ci left: 1.745302e-04	ci right 4.412282e-04	k: 20	n:70000
U2AF1   70000 perm   13 sec   (5198 perm/sec)   p_kst 2.857143e-04   p_cons 1.185714e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 4.040770e-01	ci left: 9.383869e-04	ci right 1.423955e-03	k: 93	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
U2AF1   80000 perm   16 sec   (5079 perm/sec)   p_kst 2.750000e-04   p_cons 1.162500e-03   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 3.823275e-01	ci left: 9.442672e-04	ci right 1.399978e-03	k: 104	n:90000
KS ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
U2AF1   90000 perm   18 sec   (4973 perm/sec)   p_kst 2.777778e-04   p_cons 1.155556e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.669305e-01	ci left: 9.313678e-04	ci right 1.358416e-03	k: 113	n:100000
KS ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
U2AF1   100000 perm   21 sec   (4874 perm/sec)   p_kst 2.700000e-04   p_cons 1.130000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.518263e-01	ci left: 9.294020e-04	ci right 1.334005e-03	k: 123	n:110000
KS ci ratio: 7.039504e-01	ci left: 1.840153e-04	ci right 3.893124e-04	k: 30	n:110000
U2AF1   110000 perm   23 sec   (4782 perm/sec)   p_kst 2.727273e-04   p_cons 1.118182e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.397173e-01	ci left: 9.204398e-04	ci right 1.304326e-03	k: 132	n:120000
KS ci ratio: 6.928694e-01	ci left: 1.755315e-04	ci right 3.666637e-04	k: 31	n:120000
U2AF1   120000 perm   26 sec   (4689 perm/sec)   p_kst 2.583333e-04   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 5.059511e-01	ci left: 3.455061e-04	ci right 5.853900e-04	k: 59	n:130000
Cons ci ratio: 3.242380e-01	ci left: 9.413080e-04	ci right 1.312292e-03	k: 145	n:130000
KS ci ratio: 6.532404e-01	ci left: 1.875360e-04	ci right 3.744151e-04	k: 35	n:130000
U2AF1   130000 perm   28 sec   (4603 perm/sec)   p_kst 2.692308e-04   p_cons 1.115385e-03   p_joint 4.538462e-04

Joint ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
Cons ci ratio: 3.188319e-01	ci left: 9.069011e-04	ci right 1.257149e-03	k: 150	n:140000
KS ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
U2AF1   140000 perm   31 sec   (4520 perm/sec)   p_kst 2.785714e-04   p_cons 1.071429e-03   p_joint 4.428571e-04

Joint ci ratio: 4.787957e-01	ci left: 3.403118e-04	ci right 5.597544e-04	k: 66	n:150000
Cons ci ratio: 3.031688e-01	ci left: 9.447914e-04	ci right 1.288295e-03	k: 166	n:150000
KS ci ratio: 5.908736e-01	ci left: 2.074696e-04	ci right 3.861189e-04	k: 43	n:150000
U2AF1   150000 perm   34 sec   (4445 perm/sec)   p_kst 2.866667e-04   p_cons 1.106667e-03   p_joint 4.400000e-04

Joint ci ratio: 5.237387e-01	ci left: 2.589697e-04	ci right 4.474147e-04	k: 55	n:160000
Cons ci ratio: 2.912055e-01	ci left: 9.667229e-04	ci right 1.301776e-03	k: 180	n:160000
KS ci ratio: 5.599125e-01	ci left: 2.212043e-04	ci right 3.977370e-04	k: 48	n:160000
U2AF1   160000 perm   37 sec   (4368 perm/sec)   p_kst 3.000000e-04   p_cons 1.125000e-03   p_joint 3.437500e-04

Joint ci ratio: 5.435214e-01	ci left: 2.233776e-04	ci right 3.944260e-04	k: 51	n:170000
Cons ci ratio: 2.784192e-01	ci left: 1.002720e-03	ci right 1.332318e-03	k: 197	n:170000
KS ci ratio: 5.488258e-01	ci left: 2.183074e-04	ci right 3.877393e-04	k: 50	n:170000
U2AF1   170000 perm   40 sec   (4293 perm/sec)   p_kst 2.941176e-04   p_cons 1.158824e-03   p_joint 3.000000e-04

Joint ci ratio: 5.284905e-01	ci left: 2.253770e-04	ci right 3.914170e-04	k: 54	n:180000
Cons ci ratio: 2.716453e-01	ci left: 9.987383e-04	ci right 1.317678e-03	k: 207	n:180000
KS ci ratio: 5.333629e-01	ci left: 2.205666e-04	ci right 3.851231e-04	k: 53	n:180000
U2AF1   180000 perm   43 sec   (4218 perm/sec)   p_kst 2.944444e-04   p_cons 1.150000e-03   p_joint 3.000000e-04

Joint ci ratio: 5.284948e-01	ci left: 2.135147e-04	ci right 3.708170e-04	k: 54	n:190000
Cons ci ratio: 2.659542e-01	ci left: 9.903492e-04	ci right 1.298880e-03	k: 216	n:190000
KS ci ratio: 5.191374e-01	ci left: 2.226485e-04	ci right 3.827235e-04	k: 56	n:190000
U2AF1   190000 perm   46 sec   (4148 perm/sec)   p_kst 2.947368e-04   p_cons 1.136842e-03   p_joint 2.842105e-04

Joint ci ratio: 5.717221e-01	ci left: 1.683937e-04	ci right 3.067760e-04	k: 46	n:200000
Cons ci ratio: 2.617687e-01	ci left: 9.735157e-04	ci right 1.271248e-03	k: 223	n:200000
KS ci ratio: 4.899204e-01	ci left: 2.420629e-04	ci right 4.030041e-04	k: 63	n:200000
U2AF1   200000 perm   49 sec   (4083 perm/sec)   p_kst 3.150000e-04   p_cons 1.115000e-03   p_joint 2.300000e-04

Joint ci ratio: 6.276426e-01	ci left: 1.280558e-04	ci right 2.483629e-04	k: 38	n:210000
Cons ci ratio: 2.588990e-01	ci left: 9.494121e-04	ci right 1.236074e-03	k: 228	n:210000
KS ci ratio: 4.861397e-01	ci left: 2.347115e-04	ci right 3.891577e-04	k: 64	n:210000
U2AF1   210000 perm   52 sec   (4021 perm/sec)   p_kst 3.047619e-04   p_cons 1.085714e-03   p_joint 1.809524e-04

Joint ci ratio: 7.687281e-01	ci left: 7.354077e-05	ci right 1.677452e-04	k: 25	n:220000
Cons ci ratio: 2.534254e-01	ci left: 9.487935e-04	ci right 1.228256e-03	k: 238	n:220000
KS ci ratio: 4.718375e-01	ci left: 2.400289e-04	ci right 3.918302e-04	k: 68	n:220000
U2AF1   220000 perm   56 sec   (3959 perm/sec)   p_kst 3.090909e-04   p_cons 1.081818e-03   p_joint 1.136364e-04

Joint ci ratio: 7.687301e-01	ci left: 7.034329e-05	ci right 1.604521e-04	k: 25	n:230000
Cons ci ratio: 2.497958e-01	ci left: 9.360566e-04	ci right 1.207204e-03	k: 245	n:230000
KS ci ratio: 4.684573e-01	ci left: 2.334252e-04	ci right 3.796541e-04	k: 69	n:230000
U2AF1   230000 perm   59 sec   (3901 perm/sec)   p_kst 3.000000e-04   p_cons 1.065217e-03   p_joint 1.086957e-04

Joint ci ratio: 7.687320e-01	ci left: 6.741227e-05	ci right 1.537667e-04	k: 25	n:240000
Cons ci ratio: 2.463178e-01	ci left: 9.244072e-04	ci right 1.187881e-03	k: 252	n:240000
KS ci ratio: 4.556195e-01	ci left: 2.384255e-04	ci right 3.824289e-04	k: 73	n:240000
U2AF1   240000 perm   62 sec   (3848 perm/sec)   p_kst 3.041667e-04   p_cons 1.050000e-03   p_joint 1.041667e-04

Joint ci ratio: 7.040077e-01	ci left: 8.096491e-05	ci right 1.713031e-04	k: 30	n:250000
Cons ci ratio: 2.406755e-01	ci left: 9.325031e-04	ci right 1.191288e-03	k: 264	n:250000
KS ci ratio: 4.354841e-01	ci left: 2.537480e-04	ci right 3.982521e-04	k: 80	n:250000
U2AF1   250000 perm   66 sec   (3796 perm/sec)   p_kst 3.200000e-04   p_cons 1.056000e-03   p_joint 1.200000e-04

Joint ci ratio: 6.929207e-01	ci left: 8.101292e-05	ci right 1.692343e-04	k: 31	n:260000
Cons ci ratio: 2.375601e-01	ci left: 9.219471e-04	ci right 1.174004e-03	k: 271	n:260000
KS ci ratio: 4.251134e-01	ci left: 2.577067e-04	ci right 3.999758e-04	k: 84	n:260000
U2AF1   260000 perm   69 sec   (3749 perm/sec)   p_kst 3.230769e-04   p_cons 1.042308e-03   p_joint 1.192308e-04

Joint ci ratio: 6.823414e-01	ci left: 8.106795e-05	ci right 1.673087e-04	k: 32	n:270000
Cons ci ratio: 2.345625e-01	ci left: 9.121930e-04	ci right 1.157979e-03	k: 278	n:270000
KS ci ratio: 4.178045e-01	ci left: 2.580946e-04	ci right 3.974450e-04	k: 87	n:270000
U2AF1   270000 perm   73 sec   (3700 perm/sec)   p_kst 3.222222e-04   p_cons 1.029630e-03   p_joint 1.185185e-04

Joint ci ratio: 7.687382e-01	ci left: 5.778181e-05	ci right 1.318005e-04	k: 25	n:280000
Cons ci ratio: 2.304688e-01	ci left: 9.132487e-04	ci right 1.154414e-03	k: 288	n:280000
KS ci ratio: 4.131371e-01	ci left: 2.552729e-04	ci right 3.911362e-04	k: 89	n:280000
U2AF1   280000 perm   77 sec   (3651 perm/sec)   p_kst 3.178571e-04   p_cons 1.028571e-03   p_joint 8.928571e-05

Joint ci ratio: 7.687395e-01	ci left: 5.578931e-05	ci right 1.272558e-04	k: 25	n:290000
Cons ci ratio: 2.262038e-01	ci left: 9.175192e-04	ci right 1.154703e-03	k: 299	n:290000
KS ci ratio: 4.108625e-01	ci left: 2.495610e-04	ci right 3.814529e-04	k: 90	n:290000
U2AF1   290000 perm   81 sec   (3593 perm/sec)   p_kst 3.103448e-04   p_cons 1.031034e-03   p_joint 8.620690e-05

Joint ci ratio: 7.543691e-01	ci left: 5.661430e-05	ci right 1.269842e-04	k: 26	n:300000
Cons ci ratio: 2.236113e-01	ci left: 9.089536e-04	ci right 1.140859e-03	k: 306	n:300000
KS ci ratio: 4.000186e-01	ci left: 2.562096e-04	ci right 3.870949e-04	k: 95	n:300000
U2AF1   300000 perm   85 sec   (3548 perm/sec)   p_kst 3.166667e-04   p_cons 1.020000e-03   p_joint 8.666667e-05

Joint ci ratio: 7.543703e-01	ci left: 5.478801e-05	ci right 1.228880e-04	k: 26	n:310000
Cons ci ratio: 2.207544e-01	ci left: 9.040026e-04	ci right 1.131298e-03	k: 314	n:310000
KS ci ratio: 3.959166e-01	ci left: 2.537505e-04	ci right 3.817023e-04	k: 97	n:310000
U2AF1   310000 perm   89 sec   (3502 perm/sec)   p_kst 3.129032e-04   p_cons 1.012903e-03   p_joint 8.387097e-05

Joint ci ratio: 7.278916e-01	ci left: 5.814388e-05	ci right 1.264594e-04	k: 28	n:320000
Cons ci ratio: 2.180042e-01	ci left: 8.993786e-04	ci right 1.122317e-03	k: 322	n:320000
KS ci ratio: 3.899924e-01	ci left: 2.542695e-04	ci right 3.800709e-04	k: 100	n:320000
U2AF1   320000 perm   93 sec   (3452 perm/sec)   p_kst 3.125000e-04   p_cons 1.006250e-03   p_joint 8.750000e-05

Joint ci ratio: 7.278926e-01	ci left: 5.638192e-05	ci right 1.226274e-04	k: 28	n:330000
Cons ci ratio: 2.160085e-01	ci left: 8.893179e-04	ci right 1.107476e-03	k: 328	n:330000
KS ci ratio: 3.843265e-01	ci left: 2.547704e-04	ci right 3.785252e-04	k: 103	n:330000
U2AF1   330000 perm   97 sec   (3403 perm/sec)   p_kst 3.121212e-04   p_cons 9.939394e-04   p_joint 8.484848e-05

Joint ci ratio: 7.156582e-01	ci left: 5.712353e-05	ci right 1.224943e-04	k: 29	n:340000
Cons ci ratio: 2.131136e-01	ci left: 8.882096e-04	ci right 1.102795e-03	k: 337	n:340000
KS ci ratio: 3.824932e-01	ci left: 2.499347e-04	ci right 3.706157e-04	k: 104	n:340000
U2AF1   340000 perm   101 sec   (3356 perm/sec)   p_kst 3.058824e-04   p_cons 9.911765e-04   p_joint 8.529412e-05

Joint ci ratio: 7.156591e-01	ci left: 5.549141e-05	ci right 1.189945e-04	k: 29	n:350000
Cons ci ratio: 2.091289e-01	ci left: 8.980119e-04	ci right 1.110389e-03	k: 350	n:350000
KS ci ratio: 3.789022e-01	ci left: 2.479611e-04	ci right 3.662854e-04	k: 106	n:350000
U2AF1   350000 perm   106 sec   (3313 perm/sec)   p_kst 3.028571e-04   p_cons 1.000000e-03   p_joint 8.285714e-05

Joint ci ratio: 7.156600e-01	ci left: 5.394996e-05	ci right 1.156892e-04	k: 29	n:360000
Cons ci ratio: 2.070751e-01	ci left: 8.914980e-04	ci right 1.100002e-03	k: 357	n:360000
KS ci ratio: 3.789039e-01	ci left: 2.410731e-04	ci right 3.561111e-04	k: 106	n:360000
U2AF1   360000 perm   110 sec   (3271 perm/sec)   p_kst 2.944444e-04   p_cons 9.916667e-04   p_joint 8.055556e-05

Joint ci ratio: 7.278962e-01	ci left: 5.028651e-05	ci right 1.093706e-04	k: 28	n:370000
Cons ci ratio: 2.056454e-01	ci left: 8.802181e-04	ci right 1.084484e-03	k: 362	n:370000
KS ci ratio: 3.771466e-01	ci left: 2.370034e-04	ci right 3.494450e-04	k: 107	n:370000
U2AF1   370000 perm   115 sec   (3230 perm/sec)   p_kst 2.891892e-04   p_cons 9.783784e-04   p_joint 7.567568e-05

Joint ci ratio: 6.929346e-01	ci left: 5.542959e-05	ci right 1.157928e-04	k: 31	n:380000
Cons ci ratio: 2.017898e-01	ci left: 8.920179e-04	ci right 1.094663e-03	k: 376	n:380000
KS ci ratio: 3.687073e-01	ci left: 2.426914e-04	ci right 3.546344e-04	k: 112	n:380000
U2AF1   380000 perm   119 sec   (3188 perm/sec)   p_kst 2.947368e-04   p_cons 9.894737e-04   p_joint 8.157895e-05

Joint ci ratio: 6.823547e-01	ci left: 5.612367e-05	ci right 1.158300e-04	k: 32	n:390000
Cons ci ratio: 1.996828e-01	ci left: 8.886273e-04	ci right 1.088137e-03	k: 384	n:390000
KS ci ratio: 3.639083e-01	ci left: 2.434529e-04	ci right 3.539385e-04	k: 115	n:390000
U2AF1   390000 perm   124 sec   (3148 perm/sec)   p_kst 2.948718e-04   p_cons 9.846154e-04   p_joint 8.205128e-05

Joint ci ratio: 6.625711e-01	ci left: 5.886567e-05	ci right 1.187770e-04	k: 34	n:400000
Cons ci ratio: 1.981458e-01	ci left: 8.806642e-04	ci right 1.076680e-03	k: 390	n:400000
KS ci ratio: 3.577913e-01	ci left: 2.464601e-04	ci right 3.559927e-04	k: 119	n:400000
U2AF1   400000 perm   129 sec   (3111 perm/sec)   p_kst 2.975000e-04   p_cons 9.750000e-04   p_joint 8.500000e-05

Joint ci ratio: 6.625718e-01	ci left: 5.742990e-05	ci right 1.158800e-04	k: 34	n:410000
Cons ci ratio: 1.956595e-01	ci left: 8.823725e-04	ci right 1.076011e-03	k: 400	n:410000
KS ci ratio: 3.563106e-01	ci left: 2.426690e-04	ci right 3.499670e-04	k: 120	n:410000
U2AF1   410000 perm   133 sec   (3076 perm/sec)   p_kst 2.926829e-04   p_cons 9.756098e-04   p_joint 8.292683e-05

Joint ci ratio: 6.625725e-01	ci left: 5.606251e-05	ci right 1.131210e-04	k: 34	n:420000
Cons ci ratio: 1.920984e-01	ci left: 8.953451e-04	ci right 1.087837e-03	k: 415	n:420000
KS ci ratio: 3.534023e-01	ci left: 2.412286e-04	ci right 3.468192e-04	k: 122	n:420000
U2AF1   420000 perm   138 sec   (3041 perm/sec)   p_kst 2.904762e-04   p_cons 9.880952e-04   p_joint 8.095238e-05

Joint ci ratio: 6.625732e-01	ci left: 5.475871e-05	ci right 1.104903e-04	k: 34	n:430000
Cons ci ratio: 1.889444e-01	ci left: 9.055288e-04	ci right 1.096647e-03	k: 429	n:430000
KS ci ratio: 3.519752e-01	ci left: 2.377381e-04	ci right 3.412846e-04	k: 123	n:430000
U2AF1   430000 perm   143 sec   (3007 perm/sec)   p_kst 2.860465e-04   p_cons 9.976744e-04   p_joint 7.906977e-05

Joint ci ratio: 6.625738e-01	ci left: 5.351418e-05	ci right 1.079792e-04	k: 34	n:440000
Cons ci ratio: 1.874257e-01	ci left: 9.001080e-04	ci right 1.088381e-03	k: 436	n:440000
KS ci ratio: 3.437556e-01	ci left: 2.447803e-04	ci right 3.483508e-04	k: 129	n:440000
U2AF1   440000 perm   148 sec   (2975 perm/sec)   p_kst 2.931818e-04   p_cons 9.909091e-04   p_joint 7.727273e-05

Joint ci ratio: 6.625744e-01	ci left: 5.232497e-05	ci right 1.055797e-04	k: 34	n:450000
Cons ci ratio: 1.853173e-01	ci left: 9.012911e-04	ci right 1.087452e-03	k: 446	n:450000
KS ci ratio: 3.398565e-01	ci left: 2.454352e-04	ci right 3.478464e-04	k: 132	n:450000
U2AF1   450000 perm   153 sec   (2940 perm/sec)   p_kst 2.933333e-04   p_cons 9.911111e-04   p_joint 7.555556e-05

Joint ci ratio: 6.625750e-01	ci left: 5.118746e-05	ci right 1.032846e-04	k: 34	n:460000
Cons ci ratio: 1.838837e-01	ci left: 8.962118e-04	ci right 1.079732e-03	k: 453	n:460000
KS ci ratio: 3.324395e-01	ci left: 2.520425e-04	ci right 3.544246e-04	k: 138	n:460000
U2AF1   460000 perm   158 sec   (2906 perm/sec)   p_kst 3.000000e-04   p_cons 9.847826e-04   p_joint 7.391304e-05

Joint ci ratio: 6.533076e-01	ci left: 5.187028e-05	ci right 1.035656e-04	k: 35	n:470000
Cons ci ratio: 1.824828e-01	ci left: 8.913539e-04	ci right 1.072335e-03	k: 460	n:470000
KS ci ratio: 3.266163e-01	ci left: 2.564384e-04	ci right 3.583987e-04	k: 143	n:470000
U2AF1   470000 perm   163 sec   (2876 perm/sec)   p_kst 3.042553e-04   p_cons 9.787234e-04   p_joint 7.446809e-05

Joint ci ratio: 6.533082e-01	ci left: 5.078964e-05	ci right 1.014080e-04	k: 35	n:480000
Cons ci ratio: 1.803437e-01	ci left: 8.946602e-04	ci right 1.073951e-03	k: 471	n:480000
KS ci ratio: 3.243718e-01	ci left: 2.549221e-04	ci right 3.554380e-04	k: 145	n:480000
U2AF1   480000 perm   169 sec   (2846 perm/sec)   p_kst 3.020833e-04   p_cons 9.812500e-04   p_joint 7.291667e-05

Joint ci ratio: 6.533087e-01	ci left: 4.975311e-05	ci right 9.933847e-05	k: 35	n:490000
Cons ci ratio: 1.780936e-01	ci left: 8.997933e-04	ci right 1.077621e-03	k: 483	n:490000
KS ci ratio: 3.232673e-01	ci left: 2.515945e-04	ci right 3.503905e-04	k: 146	n:490000
U2AF1   490000 perm   174 sec   (2816 perm/sec)   p_kst 2.979592e-04   p_cons 9.857143e-04   p_joint 7.142857e-05

Joint ci ratio: 6.358832e-01	ci left: 5.210335e-05	ci right 1.019978e-04	k: 37	n:500000
Cons ci ratio: 1.759257e-01	ci left: 9.047343e-04	ci right 1.081130e-03	k: 495	n:500000
KS ci ratio: 3.179053e-01	ci left: 2.557581e-04	ci right 3.541844e-04	k: 151	n:500000
U2AF1   500000 perm   179 sec   (2786 perm/sec)   p_kst 3.020000e-04   p_cons 9.900000e-04   p_joint 7.400000e-05

Joint ci ratio: 6.358837e-01	ci left: 5.108170e-05	ci right 9.999789e-05	k: 37	n:510000
Cons ci ratio: 1.741786e-01	ci left: 9.057432e-04	ci right 1.080398e-03	k: 505	n:510000
KS ci ratio: 3.158346e-01	ci left: 2.543530e-04	ci right 3.514721e-04	k: 153	n:510000
U2AF1   510000 perm   185 sec   (2756 perm/sec)   p_kst 3.000000e-04   p_cons 9.901961e-04   p_joint 7.254902e-05

Joint ci ratio: 6.358841e-01	ci left: 5.009935e-05	ci right 9.807488e-05	k: 37	n:520000
Cons ci ratio: 1.728181e-01	ci left: 9.030415e-04	ci right 1.075673e-03	k: 513	n:520000
KS ci ratio: 3.128025e-01	ci left: 2.547758e-04	ci right 3.509358e-04	k: 156	n:520000
U2AF1   520000 perm   191 sec   (2725 perm/sec)   p_kst 3.000000e-04   p_cons 9.865385e-04   p_joint 7.115385e-05

Joint ci ratio: 6.444209e-01	ci left: 4.757394e-05	ci right 9.403495e-05	k: 36	n:530000
Cons ci ratio: 1.705109e-01	ci left: 9.112835e-04	ci right 1.082926e-03	k: 527	n:530000
KS ci ratio: 3.118117e-01	ci left: 2.517075e-04	ci right 3.463487e-04	k: 157	n:530000
U2AF1   530000 perm   196 sec   (2700 perm/sec)   p_kst 2.962264e-04   p_cons 9.943396e-04   p_joint 6.792453e-05

Joint ci ratio: 6.358850e-01	ci left: 4.824380e-05	ci right 9.444253e-05	k: 37	n:540000
Cons ci ratio: 1.689188e-01	ci left: 9.121398e-04	ci right 1.082176e-03	k: 537	n:540000
KS ci ratio: 3.088929e-01	ci left: 2.521692e-04	ci right 3.459217e-04	k: 160	n:540000
U2AF1   540000 perm   202 sec   (2672 perm/sec)   p_kst 2.962963e-04   p_cons 9.944444e-04   p_joint 6.851852e-05

Joint ci ratio: 6.276795e-01	ci left: 4.889329e-05	ci right 9.483145e-05	k: 38	n:550000
Cons ci ratio: 1.672179e-01	ci left: 9.147143e-04	ci right 1.083340e-03	k: 548	n:550000
KS ci ratio: 3.069923e-01	ci left: 2.509397e-04	ci right 3.435487e-04	k: 162	n:550000
U2AF1   550000 perm   208 sec   (2648 perm/sec)   p_kst 2.945455e-04   p_cons 9.963636e-04   p_joint 6.909091e-05

Joint ci ratio: 6.121782e-01	ci left: 5.103009e-05	ci right 9.726418e-05	k: 40	n:560000
Cons ci ratio: 1.651251e-01	ci left: 9.223408e-04	ci right 1.090033e-03	k: 562	n:560000
KS ci ratio: 3.051264e-01	ci left: 2.497558e-04	ci right 3.412588e-04	k: 164	n:560000
U2AF1   560000 perm   213 sec   (2624 perm/sec)   p_kst 2.928571e-04   p_cons 1.003571e-03   p_joint 7.142857e-05

Joint ci ratio: 6.121786e-01	ci left: 5.013482e-05	ci right 9.555782e-05	k: 40	n:570000
Cons ci ratio: 1.638210e-01	ci left: 9.212989e-04	ci right 1.087349e-03	k: 571	n:570000
KS ci ratio: 3.042064e-01	ci left: 2.469944e-04	ci right 3.371600e-04	k: 165	n:570000
U2AF1   570000 perm   219 sec   (2598 perm/sec)   p_kst 2.894737e-04   p_cons 1.001754e-03   p_joint 7.017544e-05

Joint ci ratio: 5.977717e-01	ci left: 5.218998e-05	ci right 9.788117e-05	k: 42	n:580000
Cons ci ratio: 1.621289e-01	ci left: 9.252604e-04	ci right 1.090134e-03	k: 583	n:580000
KS ci ratio: 3.014943e-01	ci left: 2.475153e-04	ci right 3.369111e-04	k: 168	n:580000
U2AF1   580000 perm   225 sec   (2573 perm/sec)   p_kst 2.896552e-04   p_cons 1.005172e-03   p_joint 7.241379e-05

Joint ci ratio: 6.048471e-01	ci left: 4.986877e-05	ci right 9.427193e-05	k: 41	n:590000
Cons ci ratio: 1.610300e-01	ci left: 9.225890e-04	ci right 1.085764e-03	k: 591	n:590000
KS ci ratio: 2.997262e-01	ci left: 2.464543e-04	ci right 3.348455e-04	k: 170	n:590000
U2AF1   590000 perm   231 sec   (2549 perm/sec)   p_kst 2.881356e-04   p_cons 1.001695e-03   p_joint 6.949153e-05

Joint ci ratio: 6.048475e-01	ci left: 4.903761e-05	ci right 9.270075e-05	k: 41	n:600000
Cons ci ratio: 1.592902e-01	ci left: 9.280110e-04	ci right 1.090202e-03	k: 604	n:600000
KS ci ratio: 2.988541e-01	ci left: 2.438882e-04	ci right 3.310563e-04	k: 171	n:600000
U2AF1   600000 perm   238 sec   (2524 perm/sec)   p_kst 2.850000e-04   p_cons 1.006667e-03   p_joint 6.833333e-05

Joint ci ratio: 5.977728e-01	ci left: 4.962323e-05	ci right 9.306740e-05	k: 42	n:610000
Cons ci ratio: 1.577333e-01	ci left: 9.316897e-04	ci right 1.092782e-03	k: 616	n:610000
KS ci ratio: 2.979896e-01	ci left: 2.414066e-04	ci right 3.273909e-04	k: 172	n:610000
U2AF1   610000 perm   244 sec   (2500 perm/sec)   p_kst 2.819672e-04   p_cons 1.009836e-03   p_joint 6.885246e-05

Joint ci ratio: 5.977732e-01	ci left: 4.882285e-05	ci right 9.156633e-05	k: 42	n:620000
Cons ci ratio: 1.567208e-01	ci left: 9.290579e-04	ci right 1.088567e-03	k: 624	n:620000
KS ci ratio: 2.971325e-01	ci left: 2.390054e-04	ci right 3.238435e-04	k: 173	n:620000
U2AF1   620000 perm   250 sec   (2477 perm/sec)   p_kst 2.790323e-04   p_cons 1.006452e-03   p_joint 6.774194e-05

Joint ci ratio: 3.862172e-01	ci left: 1.320159e-04	ci right 1.965379e-04	k: 102	n:630000
Cons ci ratio: 1.549940e-01	ci left: 9.356667e-04	ci right 1.094376e-03	k: 638	n:630000
KS ci ratio: 3.098636e-01	ci left: 2.146803e-04	ci right 2.947953e-04	k: 159	n:630000
U2AF1   630000 perm   257 sec   (2454 perm/sec)   p_kst 2.523810e-04   p_cons 1.012698e-03   p_joint 1.619048e-04

Joint ci ratio: 3.843561e-01	ci left: 1.313642e-04	ci right 1.951802e-04	k: 103	n:640000
Cons ci ratio: 1.535586e-01	ci left: 9.390732e-04	ci right 1.096750e-03	k: 650	n:640000
KS ci ratio: 3.098642e-01	ci left: 2.113258e-04	ci right 2.901892e-04	k: 159	n:640000
U2AF1   640000 perm   263 sec   (2431 perm/sec)   p_kst 2.484375e-04   p_cons 1.015625e-03   p_joint 1.609375e-04

Joint ci ratio: 3.843566e-01	ci left: 1.293432e-04	ci right 1.921775e-04	k: 103	n:650000
Cons ci ratio: 1.521624e-01	ci left: 9.423815e-04	ci right 1.099043e-03	k: 662	n:650000
KS ci ratio: 3.089008e-01	ci left: 2.094937e-04	ci right 2.873823e-04	k: 160	n:650000
U2AF1   650000 perm   270 sec   (2409 perm/sec)   p_kst 2.461538e-04   p_cons 1.018462e-03   p_joint 1.584615e-04

Joint ci ratio: 3.807132e-01	ci left: 1.301224e-04	ci right 1.925860e-04	k: 105	n:660000
Cons ci ratio: 1.513658e-01	ci left: 9.383061e-04	ci right 1.093400e-03	k: 669	n:660000
KS ci ratio: 3.060623e-01	ci left: 2.105143e-04	ci right 2.879231e-04	k: 163	n:660000
U2AF1   660000 perm   276 sec   (2387 perm/sec)   p_kst 2.469697e-04   p_cons 1.013636e-03   p_joint 1.590909e-04

Joint ci ratio: 3.771715e-01	ci left: 1.308810e-04	ci right 1.929797e-04	k: 107	n:670000
Cons ci ratio: 1.504704e-01	ci left: 9.357909e-04	ci right 1.089472e-03	k: 677	n:670000
KS ci ratio: 3.033007e-01	ci left: 2.115077e-04	ci right 2.884445e-04	k: 166	n:670000
U2AF1   670000 perm   283 sec   (2366 perm/sec)   p_kst 2.477612e-04   p_cons 1.010448e-03   p_joint 1.597015e-04

Joint ci ratio: 3.754375e-01	ci left: 1.302878e-04	ci right 1.917508e-04	k: 108	n:680000
Cons ci ratio: 1.498094e-01	ci left: 9.305211e-04	ci right 1.082605e-03	k: 683	n:680000
KS ci ratio: 3.023970e-01	ci left: 2.097561e-04	ci right 2.857847e-04	k: 167	n:680000
U2AF1   680000 perm   290 sec   (2344 perm/sec)   p_kst 2.455882e-04   p_cons 1.004412e-03   p_joint 1.588235e-04

Joint ci ratio: 3.720397e-01	ci left: 1.310259e-04	ci right 1.921414e-04	k: 110	n:690000
Cons ci ratio: 1.481928e-01	ci left: 9.379642e-04	ci right 1.089464e-03	k: 698	n:690000
KS ci ratio: 2.988597e-01	ci left: 2.120762e-04	ci right 2.878759e-04	k: 171	n:690000
U2AF1   690000 perm   297 sec   (2323 perm/sec)   p_kst 2.478261e-04   p_cons 1.011594e-03   p_joint 1.594203e-04

Joint ci ratio: 3.703753e-01	ci left: 1.304494e-04	ci right 1.909578e-04	k: 111	n:700000
Cons ci ratio: 1.467303e-01	ci left: 9.438270e-04	ci right 1.094637e-03	k: 712	n:700000
KS ci ratio: 2.962869e-01	ci left: 2.130123e-04	ci right 2.883681e-04	k: 174	n:700000
U2AF1   700000 perm   304 sec   (2302 perm/sec)   p_kst 2.485714e-04   p_cons 1.017143e-03   p_joint 1.585714e-04

Joint ci ratio: 3.703757e-01	ci left: 1.286120e-04	ci right 1.882683e-04	k: 111	n:710000
Cons ci ratio: 1.459142e-01	ci left: 9.413887e-04	ci right 1.090900e-03	k: 720	n:710000
KS ci ratio: 2.937794e-01	ci left: 2.139248e-04	ci right 2.888437e-04	k: 177	n:710000
U2AF1   710000 perm   311 sec   (2283 perm/sec)   p_kst 2.492958e-04   p_cons 1.014085e-03   p_joint 1.563380e-04

Joint ci ratio: 3.687334e-01	ci left: 1.280856e-04	ci right 1.871708e-04	k: 112	n:720000
Cons ci ratio: 1.442231e-01	ci left: 9.510683e-04	ci right 1.100215e-03	k: 737	n:720000
KS ci ratio: 2.913345e-01	ci left: 2.148146e-04	ci right 2.893035e-04	k: 180	n:720000
U2AF1   720000 perm   318 sec   (2264 perm/sec)   p_kst 2.500000e-04   p_cons 1.023611e-03   p_joint 1.555556e-04

Joint ci ratio: 3.671127e-01	ci left: 1.275742e-04	ci right 1.861028e-04	k: 113	n:730000
Cons ci ratio: 1.427789e-01	ci left: 9.578504e-04	ci right 1.106429e-03	k: 752	n:730000
KS ci ratio: 2.866219e-01	ci left: 2.194956e-04	ci right 2.941536e-04	k: 186	n:730000
U2AF1   730000 perm   325 sec   (2244 perm/sec)   p_kst 2.547945e-04   p_cons 1.030137e-03   p_joint 1.547945e-04

Joint ci ratio: 3.655132e-01	ci left: 1.270772e-04	ci right 1.850631e-04	k: 114	n:740000
Cons ci ratio: 1.416545e-01	ci left: 9.605458e-04	ci right 1.108270e-03	k: 764	n:740000
KS ci ratio: 2.858589e-01	ci left: 2.177837e-04	ci right 2.916267e-04	k: 187	n:740000
U2AF1   740000 perm   332 sec   (2226 perm/sec)   p_kst 2.527027e-04   p_cons 1.032432e-03   p_joint 1.540541e-04

Joint ci ratio: 3.639345e-01	ci left: 1.265940e-04	ci right 1.840506e-04	k: 115	n:750000
Cons ci ratio: 1.407377e-01	ci left: 9.606008e-04	ci right 1.107297e-03	k: 774	n:750000
KS ci ratio: 2.836049e-01	ci left: 2.185943e-04	ci right 2.920232e-04	k: 190	n:750000
U2AF1   750000 perm   340 sec   (2207 perm/sec)   p_kst 2.533333e-04   p_cons 1.032000e-03   p_joint 1.533333e-04

Joint ci ratio: 3.623760e-01	ci left: 1.261240e-04	ci right 1.830643e-04	k: 116	n:760000
Cons ci ratio: 1.400171e-01	ci left: 9.581179e-04	ci right 1.103623e-03	k: 782	n:760000
KS ci ratio: 2.814035e-01	ci left: 2.193859e-04	ci right 2.924070e-04	k: 193	n:760000
U2AF1   760000 perm   347 sec   (2188 perm/sec)   p_kst 2.539474e-04   p_cons 1.028947e-03   p_joint 1.526316e-04

Joint ci ratio: 3.608374e-01	ci left: 1.256667e-04	ci right 1.821030e-04	k: 117	n:770000
Cons ci ratio: 1.391315e-01	ci left: 9.582083e-04	ci right 1.102731e-03	k: 792	n:770000
KS ci ratio: 2.814040e-01	ci left: 2.165366e-04	ci right 2.886096e-04	k: 193	n:770000
U2AF1   770000 perm   355 sec   (2170 perm/sec)   p_kst 2.506494e-04   p_cons 1.028571e-03   p_joint 1.519481e-04

Joint ci ratio: 3.578176e-01	ci left: 1.263883e-04	ci right 1.825630e-04	k: 119	n:780000
Cons ci ratio: 1.382625e-01	ci left: 9.582992e-04	ci right 1.101858e-03	k: 802	n:780000
KS ci ratio: 2.799646e-01	ci left: 2.161442e-04	ci right 2.876536e-04	k: 195	n:780000
U2AF1   780000 perm   362 sec   (2154 perm/sec)   p_kst 2.500000e-04   p_cons 1.028205e-03   p_joint 1.525641e-04

Joint ci ratio: 3.548725e-01	ci left: 1.270935e-04	ci right 1.830094e-04	k: 121	n:790000
Cons ci ratio: 1.370724e-01	ci left: 9.632802e-04	ci right 1.106242e-03	k: 816	n:790000
KS ci ratio: 2.778463e-01	ci left: 2.169401e-04	ci right 2.880748e-04	k: 198	n:790000
U2AF1   790000 perm   370 sec   (2137 perm/sec)   p_kst 2.506329e-04   p_cons 1.032911e-03   p_joint 1.531646e-04

Joint ci ratio: 3.687363e-01	ci left: 1.152769e-04	ci right 1.684540e-04	k: 112	n:800000
Cons ci ratio: 1.363237e-01	ci left: 9.621044e-04	ci right 1.104048e-03	k: 825	n:800000
KS ci ratio: 2.744197e-01	ci left: 2.200457e-04	ci right 2.911554e-04	k: 203	n:800000
U2AF1   800000 perm   377 sec   (2120 perm/sec)   p_kst 2.537500e-04   p_cons 1.031250e-03   p_joint 1.400000e-04

Joint ci ratio: 3.687366e-01	ci left: 1.138537e-04	ci right 1.663743e-04	k: 112	n:810000
Cons ci ratio: 1.356685e-01	ci left: 9.597670e-04	ci right 1.100631e-03	k: 833	n:810000
KS ci ratio: 2.737499e-01	ci left: 2.184788e-04	ci right 2.888801e-04	k: 204	n:810000
U2AF1   810000 perm   385 sec   (2103 perm/sec)   p_kst 2.518519e-04   p_cons 1.028395e-03   p_joint 1.382716e-04

Joint ci ratio: 3.655160e-01	ci left: 1.146793e-04	ci right 1.670084e-04	k: 114	n:820000
Cons ci ratio: 1.351030e-01	ci left: 9.563099e-04	ci right 1.096034e-03	k: 840	n:820000
KS ci ratio: 2.711173e-01	ci left: 2.203593e-04	ci right 2.905676e-04	k: 208	n:820000
U2AF1   820000 perm   393 sec   (2086 perm/sec)   p_kst 2.536585e-04   p_cons 1.024390e-03   p_joint 1.390244e-04

Joint ci ratio: 3.639372e-01	ci left: 1.143920e-04	ci right 1.663110e-04	k: 115	n:830000
Cons ci ratio: 1.340705e-01	ci left: 9.599235e-04	ci right 1.099018e-03	k: 853	n:830000
KS ci ratio: 2.685593e-01	ci left: 2.221977e-04	ci right 2.922112e-04	k: 212	n:830000
U2AF1   830000 perm   401 sec   (2070 perm/sec)   p_kst 2.554217e-04   p_cons 1.027711e-03   p_joint 1.385542e-04

Joint ci ratio: 3.639375e-01	ci left: 1.130302e-04	ci right 1.643312e-04	k: 115	n:840000
Cons ci ratio: 1.337581e-01	ci left: 9.530979e-04	ci right 1.090856e-03	k: 857	n:840000
KS ci ratio: 2.679314e-01	ci left: 2.206629e-04	ci right 2.900029e-04	k: 213	n:840000
U2AF1   840000 perm   409 sec   (2054 perm/sec)   p_kst 2.535714e-04   p_cons 1.020238e-03   p_joint 1.369048e-04

Joint ci ratio: 3.703806e-01	ci left: 1.074286e-04	ci right 1.572598e-04	k: 111	n:850000
Cons ci ratio: 1.330622e-01	ci left: 9.521198e-04	ci right 1.088964e-03	k: 866	n:850000
KS ci ratio: 2.666882e-01	ci left: 2.202621e-04	ci right 2.891014e-04	k: 215	n:850000
U2AF1   850000 perm   417 sec   (2038 perm/sec)   p_kst 2.529412e-04   p_cons 1.018824e-03   p_joint 1.305882e-04

Joint ci ratio: 3.720457e-01	ci left: 1.051251e-04	ci right 1.541605e-04	k: 110	n:860000
Cons ci ratio: 1.322260e-01	ci left: 9.534150e-04	ci right 1.089517e-03	k: 877	n:860000
KS ci ratio: 2.654621e-01	ci left: 2.198714e-04	ci right 2.882201e-04	k: 217	n:860000
U2AF1   860000 perm   425 sec   (2023 perm/sec)   p_kst 2.523256e-04   p_cons 1.019767e-03   p_joint 1.279070e-04

Joint ci ratio: 3.720460e-01	ci left: 1.039168e-04	ci right 1.523885e-04	k: 110	n:870000
Cons ci ratio: 1.314794e-01	ci left: 9.535713e-04	ci right 1.088867e-03	k: 887	n:870000
KS ci ratio: 2.630595e-01	ci left: 2.216373e-04	ci right 2.898087e-04	k: 221	n:870000
U2AF1   870000 perm   433 sec   (2007 perm/sec)   p_kst 2.540230e-04   p_cons 1.019540e-03   p_joint 1.264368e-04

Joint ci ratio: 3.703814e-01	ci left: 1.037662e-04	ci right 1.518988e-04	k: 111	n:880000
Cons ci ratio: 1.308912e-01	ci left: 9.515278e-04	ci right 1.085882e-03	k: 895	n:880000
KS ci ratio: 2.612998e-01	ci left: 2.223038e-04	ci right 2.901481e-04	k: 224	n:880000
U2AF1   880000 perm   442 sec   (1992 perm/sec)   p_kst 2.545455e-04   p_cons 1.017045e-03   p_joint 1.261364e-04

Joint ci ratio: 3.687390e-01	ci left: 1.036196e-04	ci right 1.514195e-04	k: 112	n:890000
Cons ci ratio: 1.301669e-01	ci left: 9.517055e-04	ci right 1.085284e-03	k: 905	n:890000
KS ci ratio: 2.595749e-01	ci left: 2.229567e-04	ci right 2.904783e-04	k: 227	n:890000
U2AF1   890000 perm   450 sec   (1976 perm/sec)   p_kst 2.550562e-04   p_cons 1.016854e-03   p_joint 1.258427e-04

Joint ci ratio: 3.687392e-01	ci left: 1.024682e-04	ci right 1.497371e-04	k: 112	n:900000
Cons ci ratio: 1.295961e-01	ci left: 9.497310e-04	ci right 1.082403e-03	k: 913	n:900000
KS ci ratio: 2.590078e-01	ci left: 2.215183e-04	ci right 2.884340e-04	k: 228	n:900000
U2AF1   900000 perm   459 sec   (1962 perm/sec)   p_kst 2.533333e-04   p_cons 1.014444e-03   p_joint 1.244444e-04

Joint ci ratio: 3.687395e-01	ci left: 1.013422e-04	ci right 1.480917e-04	k: 112	n:910000
Cons ci ratio: 1.288930e-01	ci left: 9.499281e-04	ci right 1.081853e-03	k: 923	n:910000
KS ci ratio: 2.590082e-01	ci left: 2.190840e-04	ci right 2.852644e-04	k: 228	n:910000
U2AF1   910000 perm   467 sec   (1947 perm/sec)   p_kst 2.505495e-04   p_cons 1.014286e-03   p_joint 1.230769e-04

Joint ci ratio: 3.671187e-01	ci left: 1.012271e-04	ci right 1.476690e-04	k: 113	n:920000
Cons ci ratio: 1.279955e-01	ci left: 9.532793e-04	ci right 1.084677e-03	k: 936	n:920000
KS ci ratio: 2.573280e-01	ci left: 2.197526e-04	ci right 2.856351e-04	k: 231	n:920000
U2AF1   920000 perm   476 sec   (1933 perm/sec)   p_kst 2.510870e-04   p_cons 1.017391e-03   p_joint 1.228261e-04

Joint ci ratio: 3.671189e-01	ci left: 1.001386e-04	ci right 1.460812e-04	k: 113	n:930000
Cons ci ratio: 1.271836e-01	ci left: 9.555205e-04	ci right 1.086329e-03	k: 948	n:930000
KS ci ratio: 2.573284e-01	ci left: 2.173896e-04	ci right 2.825638e-04	k: 231	n:930000
U2AF1   930000 perm   484 sec   (1920 perm/sec)   p_kst 2.483871e-04   p_cons 1.019355e-03   p_joint 1.215054e-04

Joint ci ratio: 3.671192e-01	ci left: 9.907333e-05	ci right 1.445271e-04	k: 113	n:940000
Cons ci ratio: 1.267837e-01	ci left: 9.515355e-04	ci right 1.081358e-03	k: 954	n:940000
KS ci ratio: 2.562264e-01	ci left: 2.170677e-04	ci right 2.818221e-04	k: 233	n:940000
U2AF1   940000 perm   493 sec   (1906 perm/sec)   p_kst 2.478723e-04   p_cons 1.014894e-03   p_joint 1.202128e-04

Joint ci ratio: 3.639404e-01	ci left: 9.994236e-05	ci right 1.453036e-04	k: 115	n:950000
Cons ci ratio: 1.263876e-01	ci left: 9.476350e-04	ci right 1.076491e-03	k: 960	n:950000
KS ci ratio: 2.540639e-01	ci left: 2.187241e-04	ci right 2.833348e-04	k: 237	n:950000
U2AF1   950000 perm   502 sec   (1893 perm/sec)   p_kst 2.494737e-04   p_cons 1.010526e-03   p_joint 1.210526e-04

Joint ci ratio: 3.639407e-01	ci left: 9.890129e-05	ci right 1.437900e-04	k: 115	n:960000
Cons ci ratio: 1.256703e-01	ci left: 9.488609e-04	ci right 1.077097e-03	k: 971	n:960000
KS ci ratio: 2.524776e-01	ci left: 2.193723e-04	ci right 2.837063e-04	k: 240	n:960000
U2AF1   960000 perm   511 sec   (1880 perm/sec)   p_kst 2.500000e-04   p_cons 1.011458e-03   p_joint 1.197917e-04

Joint ci ratio: 3.534319e-01	ci left: 1.044481e-04	ci right 1.501715e-04	k: 122	n:970000
Cons ci ratio: 1.249016e-01	ci left: 9.510623e-04	ci right 1.078752e-03	k: 983	n:970000
KS ci ratio: 2.514365e-01	ci left: 2.190424e-04	ci right 2.829733e-04	k: 242	n:970000
U2AF1   970000 perm   520 sec   (1867 perm/sec)   p_kst 2.494845e-04   p_cons 1.013402e-03   p_joint 1.257732e-04

Joint ci ratio: 3.534321e-01	ci left: 1.033823e-04	ci right 1.486392e-04	k: 122	n:980000
Cons ci ratio: 1.244599e-01	ci left: 9.482776e-04	ci right 1.075110e-03	k: 990	n:980000
KS ci ratio: 2.509209e-01	ci left: 2.177635e-04	ci right 2.811703e-04	k: 243	n:980000
U2AF1   980000 perm   528 sec   (1855 perm/sec)   p_kst 2.479592e-04   p_cons 1.010204e-03   p_joint 1.244898e-04

Joint ci ratio: 3.478213e-01	ci left: 1.060227e-04	ci right 1.515326e-04	k: 126	n:990000
Cons ci ratio: 1.240228e-01	ci left: 9.455499e-04	ci right 1.071540e-03	k: 997	n:990000
KS ci ratio: 2.478911e-01	ci left: 2.212457e-04	ci right 2.847688e-04	k: 249	n:990000
U2AF1   990000 perm   538 sec   (1840 perm/sec)   p_kst 2.515152e-04   p_cons 1.007071e-03   p_joint 1.272727e-04

Joint ci ratio: 3.520044e-01	ci left: 1.022260e-04	ci right 1.467547e-04	k: 123	n:1000000
Cons ci ratio: 1.235288e-01	ci left: 9.438467e-04	ci right 1.069073e-03	k: 1005	n:1000000
KS ci ratio: 2.454485e-01	ci left: 2.237243e-04	ci right 2.872295e-04	k: 254	n:1000000
U2AF1   1000000 perm   547 sec   (1828 perm/sec)   p_kst 2.540000e-04   p_cons 1.005000e-03   p_joint 1.230000e-04

Joint ci ratio: 3.491994e-01	ci left: 1.030197e-04	ci right 1.474555e-04	k: 125	n:1010000
Cons ci ratio: 1.229800e-01	ci left: 9.431378e-04	ci right 1.067673e-03	k: 1014	n:1010000
KS ci ratio: 2.421469e-01	ci left: 2.280166e-04	ci right 2.917388e-04	k: 261	n:1010000
U2AF1   1010000 perm   556 sec   (1816 perm/sec)   p_kst 2.584158e-04   p_cons 1.003960e-03   p_joint 1.237624e-04

Joint ci ratio: 3.478219e-01	ci left: 1.029043e-04	ci right 1.470758e-04	k: 126	n:1020000
Cons ci ratio: 1.223786e-01	ci left: 9.433944e-04	ci right 1.067310e-03	k: 1024	n:1020000
KS ci ratio: 2.416863e-01	ci left: 2.267021e-04	ci right 2.899183e-04	k: 262	n:1020000
U2AF1   1020000 perm   565 sec   (1804 perm/sec)   p_kst 2.568627e-04   p_cons 1.003922e-03   p_joint 1.235294e-04

Joint ci ratio: 3.464606e-01	ci left: 1.027915e-04	ci right 1.467030e-04	k: 127	n:1030000
Cons ci ratio: 1.216684e-01	ci left: 9.455302e-04	ci right 1.068954e-03	k: 1036	n:1030000
KS ci ratio: 2.412283e-01	ci left: 2.254132e-04	ci right 2.881331e-04	k: 263	n:1030000
U2AF1   1030000 perm   574 sec   (1793 perm/sec)   p_kst 2.553398e-04   p_cons 1.005825e-03   p_joint 1.233010e-04

Joint ci ratio: 3.437851e-01	ci left: 1.035595e-04	ci right 1.473815e-04	k: 129	n:1040000
Cons ci ratio: 1.209704e-01	ci left: 9.476269e-04	ci right 1.070564e-03	k: 1048	n:1040000
KS ci ratio: 2.407729e-01	ci left: 2.241492e-04	ci right 2.863821e-04	k: 264	n:1040000
U2AF1   1040000 perm   584 sec   (1782 perm/sec)   p_kst 2.538462e-04   p_cons 1.007692e-03   p_joint 1.240385e-04

Joint ci ratio: 3.398854e-01	ci left: 1.051851e-04	ci right 1.490794e-04	k: 132	n:1050000
Cons ci ratio: 1.202275e-01	ci left: 9.506094e-04	ci right 1.073122e-03	k: 1061	n:1050000
KS ci ratio: 2.394214e-01	ci left: 2.246997e-04	ci right 2.866834e-04	k: 267	n:1050000
U2AF1   1050000 perm   593 sec   (1770 perm/sec)   p_kst 2.542857e-04   p_cons 1.010476e-03   p_joint 1.257143e-04

Joint ci ratio: 3.398856e-01	ci left: 1.041928e-04	ci right 1.476730e-04	k: 132	n:1060000
Cons ci ratio: 1.195539e-01	ci left: 9.526227e-04	ci right 1.074659e-03	k: 1073	n:1060000
KS ci ratio: 2.389762e-01	ci left: 2.234668e-04	ci right 2.849786e-04	k: 268	n:1060000
U2AF1   1060000 perm   603 sec   (1758 perm/sec)   p_kst 2.528302e-04   p_cons 1.012264e-03   p_joint 1.245283e-04

Joint ci ratio: 3.373584e-01	ci left: 1.049293e-04	ci right 1.483203e-04	k: 134	n:1070000
Cons ci ratio: 1.188914e-01	ci left: 9.546003e-04	ci right 1.076164e-03	k: 1085	n:1070000
KS ci ratio: 2.376546e-01	ci left: 2.240146e-04	ci right 2.852861e-04	k: 271	n:1070000
U2AF1   1070000 perm   613 sec   (1747 perm/sec)   p_kst 2.532710e-04   p_cons 1.014019e-03   p_joint 1.252336e-04

Joint ci ratio: 3.373586e-01	ci left: 1.039577e-04	ci right 1.469470e-04	k: 134	n:1080000
Cons ci ratio: 1.179178e-01	ci left: 9.619346e-04	ci right 1.083360e-03	k: 1103	n:1080000
KS ci ratio: 2.372191e-01	ci left: 2.228113e-04	ci right 2.836255e-04	k: 272	n:1080000
U2AF1   1080000 perm   622 sec   (1735 perm/sec)   p_kst 2.518519e-04   p_cons 1.021296e-03   p_joint 1.240741e-04

Joint ci ratio: 3.373588e-01	ci left: 1.030040e-04	ci right 1.455989e-04	k: 134	n:1090000
Cons ci ratio: 1.171769e-01	ci left: 9.655760e-04	ci right 1.086642e-03	k: 1117	n:1090000
KS ci ratio: 2.367860e-01	ci left: 2.216301e-04	ci right 2.819953e-04	k: 273	n:1090000
U2AF1   1090000 perm   633 sec   (1723 perm/sec)   p_kst 2.504587e-04   p_cons 1.024771e-03   p_joint 1.229358e-04

Joint ci ratio: 3.361163e-01	ci left: 1.028998e-04	ci right 1.452609e-04	k: 135	n:1100000
Cons ci ratio: 1.167601e-01	ci left: 9.638580e-04	ci right 1.084249e-03	k: 1125	n:1100000
KS ci ratio: 2.359266e-01	ci left: 2.213257e-04	ci right 2.813573e-04	k: 275	n:1100000
U2AF1   1100000 perm   642 sec   (1712 perm/sec)   p_kst 2.500000e-04   p_cons 1.022727e-03   p_joint 1.227273e-04

Joint ci ratio: 3.348874e-01	ci left: 1.027978e-04	ci right 1.449288e-04	k: 136	n:1110000
Cons ci ratio: 1.165020e-01	ci left: 9.595475e-04	ci right 1.079117e-03	k: 1130	n:1110000
KS ci ratio: 2.342352e-01	ci left: 2.227232e-04	ci right 2.826380e-04	k: 279	n:1110000
U2AF1   1110000 perm   652 sec   (1701 perm/sec)   p_kst 2.513514e-04   p_cons 1.018018e-03   p_joint 1.225225e-04

Joint ci ratio: 3.336719e-01	ci left: 1.026979e-04	ci right 1.446023e-04	k: 137	n:1120000
Cons ci ratio: 1.158887e-01	ci left: 9.613831e-04	ci right 1.080507e-03	k: 1142	n:1120000
KS ci ratio: 2.329903e-01	ci left: 2.232564e-04	ci right 2.829495e-04	k: 282	n:1120000
U2AF1   1120000 perm   662 sec   (1691 perm/sec)   p_kst 2.517857e-04   p_cons 1.019643e-03   p_joint 1.223214e-04

Joint ci ratio: 3.324695e-01	ci left: 1.026000e-04	ci right 1.442813e-04	k: 138	n:1130000
Cons ci ratio: 1.152850e-01	ci left: 9.631878e-04	ci right 1.081872e-03	k: 1154	n:1130000
KS ci ratio: 2.325799e-01	ci left: 2.221140e-04	ci right 2.813820e-04	k: 283	n:1130000
U2AF1   1130000 perm   672 sec   (1681 perm/sec)   p_kst 2.504425e-04   p_cons 1.021239e-03   p_joint 1.221239e-04

Joint ci ratio: 3.289385e-01	ci left: 1.041131e-04	ci right 1.458650e-04	k: 141	n:1140000
Cons ci ratio: 1.145434e-01	ci left: 9.675186e-04	ci right 1.085917e-03	k: 1169	n:1140000
KS ci ratio: 2.313611e-01	ci left: 2.226443e-04	ci right 2.816980e-04	k: 286	n:1140000
U2AF1   1140000 perm   682 sec   (1671 perm/sec)   p_kst 2.508772e-04   p_cons 1.025439e-03   p_joint 1.236842e-04

Joint ci ratio: 3.266461e-01	ci left: 1.048038e-04	ci right 1.464783e-04	k: 143	n:1150000
Cons ci ratio: 1.140570e-01	ci left: 9.675524e-04	ci right 1.085419e-03	k: 1179	n:1150000
KS ci ratio: 2.305592e-01	ci left: 2.223468e-04	ci right 2.810880e-04	k: 288	n:1150000
U2AF1   1150000 perm   693 sec   (1660 perm/sec)   p_kst 2.504348e-04   p_cons 1.025217e-03   p_joint 1.243478e-04

Joint ci ratio: 3.244010e-01	ci left: 1.054836e-04	ci right 1.470801e-04	k: 145	n:1160000
Cons ci ratio: 1.133387e-01	ci left: 9.717749e-04	ci right 1.089360e-03	k: 1194	n:1160000
KS ci ratio: 2.289798e-01	ci left: 2.236798e-04	ci right 2.823113e-04	k: 292	n:1160000
U2AF1   1160000 perm   703 sec   (1650 perm/sec)   p_kst 2.517241e-04   p_cons 1.029310e-03   p_joint 1.250000e-04

Joint ci ratio: 3.232957e-01	ci left: 1.053673e-04	ci right 1.467470e-04	k: 146	n:1170000
Cons ci ratio: 1.129613e-01	ci left: 9.701131e-04	ci right 1.087080e-03	k: 1202	n:1170000
KS ci ratio: 2.285902e-01	ci left: 2.225738e-04	ci right 2.808020e-04	k: 293	n:1170000
U2AF1   1170000 perm   714 sec   (1639 perm/sec)   p_kst 2.504274e-04   p_cons 1.027350e-03   p_joint 1.247863e-04

Joint ci ratio: 3.211185e-01	ci left: 1.060322e-04	ci right 1.473349e-04	k: 148	n:1180000
Cons ci ratio: 1.124020e-01	ci left: 9.717748e-04	ci right 1.088324e-03	k: 1214	n:1180000
KS ci ratio: 2.278167e-01	ci left: 2.222856e-04	ci right 2.802139e-04	k: 295	n:1180000
U2AF1   1180000 perm   724 sec   (1630 perm/sec)   p_kst 2.500000e-04   p_cons 1.028814e-03   p_joint 1.254237e-04

Joint ci ratio: 3.189847e-01	ci left: 1.066868e-04	ci right 1.479120e-04	k: 150	n:1190000
Cons ci ratio: 1.119881e-01	ci left: 9.709594e-04	ci right 1.086953e-03	k: 1223	n:1190000
KS ci ratio: 2.266709e-01	ci left: 2.227951e-04	ci right 2.805235e-04	k: 298	n:1190000
U2AF1   1190000 perm   735 sec   (1620 perm/sec)   p_kst 2.504202e-04   p_cons 1.027731e-03   p_joint 1.260504e-04

Joint ci ratio: 3.179337e-01	ci left: 1.065645e-04	ci right 1.475791e-04	k: 151	n:1200000
Cons ci ratio: 1.115334e-01	ci left: 9.709684e-04	ci right 1.086462e-03	k: 1233	n:1200000
KS ci ratio: 2.255422e-01	ci left: 2.232969e-04	ci right 2.808271e-04	k: 301	n:1200000
U2AF1   1200000 perm   746 sec   (1610 perm/sec)   p_kst 2.508333e-04   p_cons 1.027500e-03   p_joint 1.258333e-04

Joint ci ratio: 3.179339e-01	ci left: 1.056838e-04	ci right 1.463594e-04	k: 151	n:1210000
Cons ci ratio: 1.110842e-01	ci left: 9.709783e-04	ci right 1.085977e-03	k: 1243	n:1210000
KS ci ratio: 2.255424e-01	ci left: 2.214515e-04	ci right 2.785063e-04	k: 301	n:1210000
U2AF1   1210000 perm   756 sec   (1600 perm/sec)   p_kst 2.487603e-04   p_cons 1.027273e-03   p_joint 1.247934e-04

Joint ci ratio: 3.179340e-01	ci left: 1.048175e-04	ci right 1.451598e-04	k: 151	n:1220000
Cons ci ratio: 1.105522e-01	ci left: 9.725829e-04	ci right 1.087184e-03	k: 1255	n:1220000
KS ci ratio: 2.255426e-01	ci left: 2.196363e-04	ci right 2.762235e-04	k: 301	n:1220000
U2AF1   1220000 perm   767 sec   (1592 perm/sec)   p_kst 2.467213e-04   p_cons 1.028689e-03   p_joint 1.237705e-04

Joint ci ratio: 3.168934e-01	ci left: 1.047136e-04	ci right 1.448572e-04	k: 152	n:1230000
Cons ci ratio: 1.102019e-01	ci left: 9.710002e-04	ci right 1.085029e-03	k: 1263	n:1230000
KS ci ratio: 2.251703e-01	ci left: 2.186177e-04	ci right 2.748366e-04	k: 302	n:1230000
U2AF1   1230000 perm   777 sec   (1583 perm/sec)   p_kst 2.455285e-04   p_cons 1.026829e-03   p_joint 1.235772e-04

Joint ci ratio: 3.148422e-01	ci left: 1.053542e-04	ci right 1.454293e-04	k: 154	n:1240000
Cons ci ratio: 1.096824e-01	ci left: 9.725809e-04	ci right 1.086222e-03	k: 1275	n:1240000
KS ci ratio: 2.247998e-01	ci left: 2.176157e-04	ci right 2.734720e-04	k: 303	n:1240000
U2AF1   1240000 perm   788 sec   (1573 perm/sec)   p_kst 2.443548e-04   p_cons 1.028226e-03   p_joint 1.241935e-04

Joint ci ratio: 3.211196e-01	ci left: 1.000943e-04	ci right 1.390842e-04	k: 148	n:1250000
Cons ci ratio: 1.093829e-01	ci left: 9.702468e-04	ci right 1.083286e-03	k: 1282	n:1250000
KS ci ratio: 2.236987e-01	ci left: 2.181399e-04	ci right 2.738188e-04	k: 306	n:1250000
U2AF1   1250000 perm   799 sec   (1564 perm/sec)   p_kst 2.448000e-04   p_cons 1.025600e-03   p_joint 1.184000e-04

Joint ci ratio: 3.200475e-01	ci left: 1.000297e-04	ci right 1.388376e-04	k: 149	n:1260000
Cons ci ratio: 1.087070e-01	ci left: 9.748986e-04	ci right 1.087733e-03	k: 1298	n:1260000
KS ci ratio: 2.233353e-01	ci left: 2.171579e-04	ci right 2.724837e-04	k: 307	n:1260000
U2AF1   1260000 perm   810 sec   (1555 perm/sec)   p_kst 2.436508e-04   p_cons 1.030159e-03   p_joint 1.182540e-04

Joint ci ratio: 3.200476e-01	ci left: 9.924208e-05	ci right 1.377444e-04	k: 149	n:1270000
Cons ci ratio: 1.083324e-01	ci left: 9.741165e-04	ci right 1.086447e-03	k: 1307	n:1270000
KS ci ratio: 2.226138e-01	ci left: 2.169348e-04	ci right 2.720007e-04	k: 309	n:1270000
U2AF1   1270000 perm   821 sec   (1546 perm/sec)   p_kst 2.433071e-04   p_cons 1.029134e-03   p_joint 1.173228e-04

Joint ci ratio: 3.200478e-01	ci left: 9.846675e-05	ci right 1.366683e-04	k: 149	n:1280000
Cons ci ratio: 1.078388e-01	ci left: 9.756278e-04	ci right 1.087587e-03	k: 1319	n:1280000
KS ci ratio: 2.226140e-01	ci left: 2.152400e-04	ci right 2.698758e-04	k: 309	n:1280000
U2AF1   1280000 perm   833 sec   (1537 perm/sec)   p_kst 2.414063e-04   p_cons 1.030469e-03   p_joint 1.164063e-04

Joint ci ratio: 3.158636e-01	ci left: 1.005568e-04	ci right 1.389562e-04	k: 153	n:1290000
Cons ci ratio: 1.073115e-01	ci left: 9.778712e-04	ci right 1.089505e-03	k: 1332	n:1290000
KS ci ratio: 2.211914e-01	ci left: 2.164999e-04	ci right 2.710565e-04	k: 313	n:1290000
U2AF1   1290000 perm   844 sec   (1529 perm/sec)   p_kst 2.426357e-04   p_cons 1.032558e-03   p_joint 1.186047e-04

Joint ci ratio: 3.148431e-01	ci left: 1.004917e-04	ci right 1.387173e-04	k: 154	n:1300000
Cons ci ratio: 1.069113e-01	ci left: 9.778354e-04	ci right 1.089022e-03	k: 1342	n:1300000
KS ci ratio: 2.211916e-01	ci left: 2.148345e-04	ci right 2.689715e-04	k: 313	n:1300000
U2AF1   1300000 perm   855 sec   (1521 perm/sec)   p_kst 2.407692e-04   p_cons 1.032308e-03   p_joint 1.184615e-04

Joint ci ratio: 3.138324e-01	ci left: 1.004277e-04	ci right 1.384817e-04	k: 155	n:1310000
Cons ci ratio: 1.063582e-01	ci left: 9.807730e-04	ci right 1.091681e-03	k: 1356	n:1310000
KS ci ratio: 2.201424e-01	ci left: 2.153581e-04	ci right 2.693347e-04	k: 316	n:1310000
U2AF1   1310000 perm   866 sec   (1512 perm/sec)   p_kst 2.412214e-04   p_cons 1.035115e-03   p_joint 1.183206e-04

Joint ci ratio: 3.118397e-01	ci left: 1.010631e-04	ci right 1.390663e-04	k: 157	n:1320000
Cons ci ratio: 1.058910e-01	ci left: 9.821926e-04	ci right 1.092743e-03	k: 1368	n:1320000
KS ci ratio: 2.184263e-01	ci left: 2.173064e-04	ci right 2.712899e-04	k: 321	n:1320000
U2AF1   1320000 perm   878 sec   (1504 perm/sec)   p_kst 2.431818e-04   p_cons 1.036364e-03   p_joint 1.189394e-04

Joint ci ratio: 3.108575e-01	ci left: 1.009964e-04	ci right 1.388312e-04	k: 158	n:1330000
Cons ci ratio: 1.055446e-01	ci left: 9.813957e-04	ci right 1.091472e-03	k: 1377	n:1330000
KS ci ratio: 2.174158e-01	ci left: 2.178051e-04	ci right 2.716286e-04	k: 324	n:1330000
U2AF1   1330000 perm   889 sec   (1496 perm/sec)   p_kst 2.436090e-04   p_cons 1.035338e-03   p_joint 1.187970e-04

Joint ci ratio: 3.089206e-01	ci left: 1.016192e-04	ci right 1.394033e-04	k: 160	n:1340000
Cons ci ratio: 1.050880e-01	ci left: 9.827912e-04	ci right 1.092518e-03	k: 1389	n:1340000
KS ci ratio: 2.170822e-01	ci left: 2.168853e-04	ci right 2.703884e-04	k: 325	n:1340000
U2AF1   1340000 perm   901 sec   (1488 perm/sec)   p_kst 2.425373e-04   p_cons 1.036567e-03   p_joint 1.194030e-04

Joint ci ratio: 3.089207e-01	ci left: 1.008664e-04	ci right 1.383707e-04	k: 160	n:1350000
Cons ci ratio: 1.048997e-01	ci left: 9.791176e-04	ci right 1.088226e-03	k: 1394	n:1350000
KS ci ratio: 2.170824e-01	ci left: 2.152788e-04	ci right 2.683855e-04	k: 325	n:1350000
U2AF1   1350000 perm   912 sec   (1480 perm/sec)   p_kst 2.407407e-04   p_cons 1.032593e-03   p_joint 1.185185e-04

Joint ci ratio: 3.060820e-01	ci left: 1.021605e-04	ci right 1.397288e-04	k: 163	n:1360000
Cons ci ratio: 1.046750e-01	ci left: 9.762143e-04	ci right 1.084752e-03	k: 1400	n:1360000
KS ci ratio: 2.160904e-01	ci left: 2.157821e-04	ci right 2.687375e-04	k: 328	n:1360000
U2AF1   1360000 perm   924 sec   (1472 perm/sec)   p_kst 2.411765e-04   p_cons 1.029412e-03   p_joint 1.198529e-04

Joint ci ratio: 3.042325e-01	ci left: 1.027629e-04	ci right 1.402802e-04	k: 165	n:1370000
Cons ci ratio: 1.043405e-01	ci left: 9.754862e-04	ci right 1.083575e-03	k: 1409	n:1370000
KS ci ratio: 2.154366e-01	ci left: 2.155880e-04	ci right 2.683145e-04	k: 330	n:1370000
U2AF1   1370000 perm   935 sec   (1465 perm/sec)   p_kst 2.408759e-04   p_cons 1.028467e-03   p_joint 1.204380e-04

Joint ci ratio: 3.070199e-01	ci left: 1.000109e-04	ci right 1.369236e-04	k: 162	n:1380000
Cons ci ratio: 1.040825e-01	ci left: 9.733577e-04	ci right 1.080928e-03	k: 1416	n:1380000
KS ci ratio: 2.141464e-01	ci left: 2.167684e-04	ci right 2.694244e-04	k: 334	n:1380000
U2AF1   1380000 perm   947 sec   (1457 perm/sec)   p_kst 2.420290e-04   p_cons 1.026087e-03   p_joint 1.173913e-04

Joint ci ratio: 3.070200e-01	ci left: 9.929144e-05	ci right 1.359386e-04	k: 162	n:1390000
Cons ci ratio: 1.038996e-01	ci left: 9.698586e-04	ci right 1.076842e-03	k: 1421	n:1390000
KS ci ratio: 2.141466e-01	ci left: 2.152089e-04	ci right 2.674861e-04	k: 334	n:1390000
U2AF1   1390000 perm   959 sec   (1450 perm/sec)   p_kst 2.402878e-04   p_cons 1.022302e-03   p_joint 1.165468e-04

Joint ci ratio: 3.033205e-01	ci left: 1.012206e-04	ci right 1.380428e-04	k: 166	n:1400000
Cons ci ratio: 1.034278e-01	ci left: 9.719761e-04	ci right 1.078677e-03	k: 1434	n:1400000
KS ci ratio: 2.128793e-01	ci left: 2.163761e-04	ci right 2.685852e-04	k: 338	n:1400000
U2AF1   1400000 perm   971 sec   (1442 perm/sec)   p_kst 2.414286e-04   p_cons 1.024286e-03   p_joint 1.185714e-04

Joint ci ratio: 3.033206e-01	ci left: 1.005027e-04	ci right 1.370638e-04	k: 166	n:1410000
Cons ci ratio: 1.030693e-01	ci left: 9.719917e-04	ci right 1.078302e-03	k: 1444	n:1410000
KS ci ratio: 2.119435e-01	ci left: 2.168560e-04	ci right 2.689210e-04	k: 341	n:1410000
U2AF1   1410000 perm   983 sec   (1435 perm/sec)   p_kst 2.418440e-04   p_cons 1.024113e-03   p_joint 1.177305e-04

Joint ci ratio: 3.179369e-01	ci left: 9.005439e-05	ci right 1.247149e-04	k: 151	n:1420000
Cons ci ratio: 1.027145e-01	ci left: 9.720077e-04	ci right 1.077932e-03	k: 1454	n:1420000
KS ci ratio: 2.113266e-01	ci left: 2.166626e-04	ci right 2.685102e-04	k: 343	n:1420000
U2AF1   1420000 perm   995 sec   (1427 perm/sec)   p_kst 2.415493e-04   p_cons 1.023944e-03   p_joint 1.063380e-04

Joint ci ratio: 3.168962e-01	ci left: 9.006823e-05	ci right 1.245976e-04	k: 152	n:1430000
Cons ci ratio: 1.022586e-01	ci left: 9.740684e-04	ci right 1.079718e-03	k: 1467	n:1430000
KS ci ratio: 2.110202e-01	ci left: 2.158098e-04	ci right 2.673687e-04	k: 344	n:1430000
U2AF1   1430000 perm   1007 sec   (1420 perm/sec)   p_kst 2.405594e-04   p_cons 1.025874e-03   p_joint 1.062937e-04

Joint ci ratio: 3.168963e-01	ci left: 8.944276e-05	ci right 1.237324e-04	k: 152	n:1440000
Cons ci ratio: 1.018431e-01	ci left: 9.754247e-04	ci right 1.080765e-03	k: 1479	n:1440000
KS ci ratio: 2.104112e-01	ci left: 2.156267e-04	ci right 2.669741e-04	k: 346	n:1440000
U2AF1   1440000 perm   1019 sec   (1413 perm/sec)   p_kst 2.402778e-04   p_cons 1.027083e-03   p_joint 1.055556e-04

Joint ci ratio: 3.148450e-01	ci left: 9.009589e-05	ci right 1.243673e-04	k: 154	n:1450000
Cons ci ratio: 1.015349e-01	ci left: 9.747466e-04	ci right 1.079677e-03	k: 1488	n:1450000
KS ci ratio: 2.095075e-01	ci left: 2.160998e-04	ci right 2.673105e-04	k: 349	n:1450000
U2AF1   1450000 perm   1032 sec   (1406 perm/sec)   p_kst 2.406897e-04   p_cons 1.026207e-03   p_joint 1.062069e-04

Joint ci ratio: 3.128331e-01	ci left: 9.074078e-05	ci right 1.249929e-04	k: 156	n:1460000
Cons ci ratio: 1.012295e-01	ci left: 9.740784e-04	ci right 1.078602e-03	k: 1497	n:1460000
KS ci ratio: 2.086153e-01	ci left: 2.165669e-04	ci right 2.676418e-04	k: 352	n:1460000
U2AF1   1460000 perm   1044 sec   (1399 perm/sec)   p_kst 2.410959e-04   p_cons 1.025342e-03   p_joint 1.068493e-04

Joint ci ratio: 3.118416e-01	ci left: 9.075046e-05	ci right 1.248760e-04	k: 157	n:1470000
Cons ci ratio: 1.008598e-01	ci left: 9.747459e-04	ci right 1.078937e-03	k: 1508	n:1470000
KS ci ratio: 2.080268e-01	ci left: 2.163832e-04	ci right 2.672525e-04	k: 354	n:1470000
U2AF1   1470000 perm   1056 sec   (1392 perm/sec)   p_kst 2.408163e-04   p_cons 1.025850e-03   p_joint 1.068027e-04

Joint ci ratio: 3.108594e-01	ci left: 9.076017e-05	ci right 1.247606e-04	k: 158	n:1480000
Cons ci ratio: 1.006268e-01	ci left: 9.727703e-04	ci right 1.076496e-03	k: 1515	n:1480000
KS ci ratio: 2.074433e-01	ci left: 2.162023e-04	ci right 2.668683e-04	k: 356	n:1480000
U2AF1   1480000 perm   1069 sec   (1385 perm/sec)   p_kst 2.405405e-04   p_cons 1.023649e-03   p_joint 1.067568e-04

Joint ci ratio: 3.098865e-01	ci left: 9.076991e-05	ci right 1.246465e-04	k: 159	n:1490000
Cons ci ratio: 1.002966e-01	ci left: 9.727844e-04	ci right 1.076151e-03	k: 1525	n:1490000
KS ci ratio: 2.068647e-01	ci left: 2.160239e-04	ci right 2.664891e-04	k: 358	n:1490000
U2AF1   1490000 perm   1082 sec   (1377 perm/sec)   p_kst 2.402685e-04   p_cons 1.023490e-03   p_joint 1.067114e-04

Joint ci ratio: 3.079676e-01	ci left: 9.139477e-05	ci right 1.252519e-04	k: 161	n:1500000
Cons ci ratio: 9.996957e-02	ci left: 9.727989e-04	ci right 1.075810e-03	k: 1535	n:1500000
KS ci ratio: 2.057217e-01	ci left: 2.171127e-04	ci right 2.675167e-04	k: 362	n:1500000
U2AF1   1500000 perm   1095 sec   (1370 perm/sec)   p_kst 2.413333e-04   p_cons 1.023333e-03   p_joint 1.073333e-04

Joint ci ratio: 3.070214e-01	ci left: 9.140067e-05	ci right 1.251356e-04	k: 162	n:1510000
Cons ci ratio: 9.951695e-02	ci left: 9.753968e-04	ci right 1.078188e-03	k: 1549	n:1510000
KS ci ratio: 2.054390e-01	ci left: 2.163030e-04	ci right 2.664414e-04	k: 363	n:1510000
U2AF1   1510000 perm   1108 sec   (1363 perm/sec)   p_kst 2.403974e-04   p_cons 1.025828e-03   p_joint 1.072848e-04

Joint ci ratio: 3.070215e-01	ci left: 9.079934e-05	ci right 1.243123e-04	k: 162	n:1520000
Cons ci ratio: 9.929310e-02	ci left: 9.734705e-04	ci right 1.075814e-03	k: 1556	n:1520000
KS ci ratio: 2.054392e-01	ci left: 2.148799e-04	ci right 2.646885e-04	k: 363	n:1520000
U2AF1   1520000 perm   1121 sec   (1356 perm/sec)   p_kst 2.388158e-04   p_cons 1.023684e-03   p_joint 1.065789e-04

Joint ci ratio: 3.060841e-01	ci left: 9.080921e-05	ci right 1.242036e-04	k: 163	n:1530000
Cons ci ratio: 9.894418e-02	ci left: 9.741192e-04	ci right 1.076151e-03	k: 1567	n:1530000
KS ci ratio: 2.051576e-01	ci left: 2.140954e-04	ci right 2.636456e-04	k: 364	n:1530000
U2AF1   1530000 perm   1134 sec   (1350 perm/sec)   p_kst 2.379085e-04   p_cons 1.024183e-03   p_joint 1.065359e-04

Joint ci ratio: 3.060842e-01	ci left: 9.021953e-05	ci right 1.233970e-04	k: 163	n:1540000
Cons ci ratio: 9.859891e-02	ci left: 9.747602e-04	ci right 1.076482e-03	k: 1578	n:1540000
KS ci ratio: 2.045979e-01	ci left: 2.139373e-04	ci right 2.632989e-04	k: 366	n:1540000
U2AF1   1540000 perm   1146 sec   (1343 perm/sec)   p_kst 2.376623e-04   p_cons 1.024675e-03   p_joint 1.058442e-04

Joint ci ratio: 3.051552e-01	ci left: 9.023317e-05	ci right 1.232954e-04	k: 164	n:1550000
Cons ci ratio: 9.828817e-02	ci left: 9.747642e-04	ci right 1.076147e-03	k: 1588	n:1550000
KS ci ratio: 2.043198e-01	ci left: 2.131692e-04	ci right 2.622784e-04	k: 367	n:1550000
U2AF1   1550000 perm   1159 sec   (1337 perm/sec)   p_kst 2.367742e-04   p_cons 1.024516e-03   p_joint 1.058065e-04

Joint ci ratio: 3.051553e-01	ci left: 8.965474e-05	ci right 1.225051e-04	k: 164	n:1560000
Cons ci ratio: 9.810326e-02	ci left: 9.722674e-04	ci right 1.073190e-03	k: 1594	n:1560000
KS ci ratio: 2.040428e-01	ci left: 2.124110e-04	ci right 2.612709e-04	k: 368	n:1560000
U2AF1   1560000 perm   1173 sec   (1330 perm/sec)   p_kst 2.358974e-04   p_cons 1.021795e-03   p_joint 1.051282e-04

Joint ci ratio: 3.042348e-01	ci left: 8.967195e-05	ci right 1.224103e-04	k: 165	n:1570000
Cons ci ratio: 9.782769e-02	ci left: 9.716666e-04	ci right 1.072227e-03	k: 1603	n:1570000
KS ci ratio: 2.032184e-01	ci left: 2.128714e-04	ci right 2.616148e-04	k: 371	n:1570000
U2AF1   1570000 perm   1186 sec   (1324 perm/sec)   p_kst 2.363057e-04   p_cons 1.021019e-03   p_joint 1.050955e-04

Joint ci ratio: 3.336779e-01	ci left: 7.279829e-05	ci right 1.025032e-04	k: 137	n:1580000
Cons ci ratio: 9.749393e-02	ci left: 9.723088e-04	ci right 1.072573e-03	k: 1614	n:1580000
KS ci ratio: 2.026743e-01	ci left: 2.127256e-04	ci right 2.612891e-04	k: 373	n:1580000
U2AF1   1580000 perm   1199 sec   (1318 perm/sec)   p_kst 2.360759e-04   p_cons 1.021519e-03   p_joint 8.670886e-05

Joint ci ratio: 3.324754e-01	ci left: 7.291678e-05	ci right 1.025399e-04	k: 138	n:1590000
Cons ci ratio: 9.710381e-02	ci left: 9.741709e-04	ci right 1.074202e-03	k: 1627	n:1590000
KS ci ratio: 2.018663e-01	ci left: 2.131790e-04	ci right 2.616280e-04	k: 376	n:1590000
U2AF1   1590000 perm   1212 sec   (1312 perm/sec)   p_kst 2.364780e-04   p_cons 1.023270e-03   p_joint 8.679245e-05

Joint ci ratio: 3.324755e-01	ci left: 7.246105e-05	ci right 1.018990e-04	k: 138	n:1600000
Cons ci ratio: 9.701469e-02	ci left: 9.699117e-04	ci right 1.069409e-03	k: 1630	n:1600000
KS ci ratio: 2.018664e-01	ci left: 2.118466e-04	ci right 2.599928e-04	k: 376	n:1600000
U2AF1   1600000 perm   1226 sec   (1305 perm/sec)   p_kst 2.350000e-04   p_cons 1.018750e-03   p_joint 8.625000e-05

Joint ci ratio: 3.324756e-01	ci left: 7.201098e-05	ci right 1.012661e-04	k: 138	n:1610000
Cons ci ratio: 9.671864e-02	ci left: 9.699481e-04	ci right 1.069128e-03	k: 1640	n:1610000
KS ci ratio: 2.018666e-01	ci left: 2.105308e-04	ci right 2.583780e-04	k: 376	n:1610000
U2AF1   1610000 perm   1239 sec   (1299 perm/sec)   p_kst 2.335404e-04   p_cons 1.018634e-03   p_joint 8.571429e-05

Joint ci ratio: 3.312860e-01	ci left: 7.213232e-05	ci right 1.013096e-04	k: 139	n:1620000
Cons ci ratio: 9.639608e-02	ci left: 9.705869e-04	ci right 1.069482e-03	k: 1651	n:1620000
KS ci ratio: 2.013333e-01	ci left: 2.104034e-04	ci right 2.580799e-04	k: 378	n:1620000
U2AF1   1620000 perm   1253 sec   (1293 perm/sec)   p_kst 2.333333e-04   p_cons 1.019136e-03   p_joint 8.580247e-05

Joint ci ratio: 3.301092e-01	ci left: 7.225235e-05	ci right 1.013523e-04	k: 140	n:1630000
Cons ci ratio: 9.619259e-02	ci left: 9.688234e-04	ci right 1.067319e-03	k: 1658	n:1630000
KS ci ratio: 2.010683e-01	ci left: 2.096952e-04	ci right 2.571409e-04	k: 379	n:1630000
U2AF1   1630000 perm   1267 sec   (1286 perm/sec)   p_kst 2.325153e-04   p_cons 1.017178e-03   p_joint 8.588957e-05

Joint ci ratio: 3.289448e-01	ci left: 7.237111e-05	ci right 1.013943e-04	k: 141	n:1640000
Cons ci ratio: 9.590399e-02	ci left: 9.688671e-04	ci right 1.067055e-03	k: 1668	n:1640000
KS ci ratio: 2.005412e-01	ci left: 2.095748e-04	ci right 2.568538e-04	k: 381	n:1640000
U2AF1   1640000 perm   1281 sec   (1280 perm/sec)   p_kst 2.323171e-04   p_cons 1.017073e-03   p_joint 8.597561e-05

Joint ci ratio: 3.373660e-01	ci left: 6.804482e-05	ci right 9.618388e-05	k: 134	n:1650000
Cons ci ratio: 9.558948e-02	ci left: 9.695022e-04	ci right 1.067414e-03	k: 1679	n:1650000
KS ci ratio: 1.994993e-01	ci left: 2.106075e-04	ci right 2.578425e-04	k: 385	n:1650000
U2AF1   1650000 perm   1295 sec   (1274 perm/sec)   p_kst 2.333333e-04   p_cons 1.017576e-03   p_joint 8.121212e-05

Joint ci ratio: 3.373661e-01	ci left: 6.763491e-05	ci right 9.560446e-05	k: 134	n:1660000
Cons ci ratio: 9.519355e-02	ci left: 9.718944e-04	ci right 1.069619e-03	k: 1693	n:1660000
KS ci ratio: 1.994995e-01	ci left: 2.093387e-04	ci right 2.562893e-04	k: 385	n:1660000
U2AF1   1660000 perm   1309 sec   (1269 perm/sec)   p_kst 2.319277e-04   p_cons 1.019880e-03   p_joint 8.072289e-05

Joint ci ratio: 3.361234e-01	ci left: 6.777809e-05	ci right 9.568123e-05	k: 135	n:1670000
Cons ci ratio: 9.491382e-02	ci left: 9.719204e-04	ci right 1.069344e-03	k: 1703	n:1670000
KS ci ratio: 1.989847e-01	ci left: 2.092231e-04	ci right 2.560119e-04	k: 387	n:1670000
U2AF1   1670000 perm   1323 sec   (1263 perm/sec)   p_kst 2.317365e-04   p_cons 1.019760e-03   p_joint 8.083832e-05

Joint ci ratio: 3.361235e-01	ci left: 6.737464e-05	ci right 9.511170e-05	k: 135	n:1680000
Cons ci ratio: 9.477502e-02	ci left: 9.690406e-04	ci right 1.066026e-03	k: 1708	n:1680000
KS ci ratio: 1.987288e-01	ci left: 2.085433e-04	ci right 2.551129e-04	k: 388	n:1680000
U2AF1   1680000 perm   1336 sec   (1257 perm/sec)   p_kst 2.309524e-04   p_cons 1.016667e-03   p_joint 8.035714e-05

Joint ci ratio: 3.361236e-01	ci left: 6.697598e-05	ci right 9.454892e-05	k: 135	n:1690000
Cons ci ratio: 9.441652e-02	ci left: 9.708170e-04	ci right 1.067592e-03	k: 1721	n:1690000
KS ci ratio: 1.987290e-01	ci left: 2.073093e-04	ci right 2.536033e-04	k: 388	n:1690000
U2AF1   1690000 perm   1351 sec   (1251 perm/sec)   p_kst 2.295858e-04   p_cons 1.018343e-03   p_joint 7.988166e-05

Joint ci ratio: 3.336789e-01	ci left: 6.765956e-05	ci right 9.526777e-05	k: 137	n:1700000
Cons ci ratio: 9.400783e-02	ci left: 9.737221e-04	ci right 1.070344e-03	k: 1736	n:1700000
KS ci ratio: 1.979670e-01	ci left: 2.077669e-04	ci right 2.539638e-04	k: 391	n:1700000
U2AF1   1700000 perm   1365 sec   (1245 perm/sec)   p_kst 2.300000e-04   p_cons 1.021176e-03   p_joint 8.058824e-05

Joint ci ratio: 3.324764e-01	ci left: 6.779978e-05	ci right 9.534417e-05	k: 138	n:1710000
Cons ci ratio: 9.371155e-02	ci left: 9.743095e-04	ci right 1.070668e-03	k: 1747	n:1710000
KS ci ratio: 1.974639e-01	ci left: 2.076636e-04	ci right 2.537060e-04	k: 393	n:1710000
U2AF1   1710000 perm   1380 sec   (1239 perm/sec)   p_kst 2.298246e-04   p_cons 1.021637e-03   p_joint 8.070175e-05

Joint ci ratio: 3.301099e-01	ci left: 6.847168e-05	ci right 9.604900e-05	k: 140	n:1720000
Cons ci ratio: 9.341806e-02	ci left: 9.748907e-04	ci right 1.070988e-03	k: 1758	n:1720000
KS ci ratio: 1.967164e-01	ci left: 2.081144e-04	ci right 2.540611e-04	k: 396	n:1720000
U2AF1   1720000 perm   1394 sec   (1233 perm/sec)   p_kst 2.302326e-04   p_cons 1.022093e-03   p_joint 8.139535e-05

Joint ci ratio: 3.301100e-01	ci left: 6.807589e-05	ci right 9.549381e-05	k: 140	n:1730000
Cons ci ratio: 9.310098e-02	ci left: 9.760301e-04	ci right 1.071896e-03	k: 1770	n:1730000
KS ci ratio: 1.962228e-01	ci left: 2.080106e-04	ci right 2.538054e-04	k: 398	n:1730000
U2AF1   1730000 perm   1409 sec   (1228 perm/sec)   p_kst 2.300578e-04   p_cons 1.023121e-03   p_joint 8.092486e-05

Joint ci ratio: 3.289456e-01	ci left: 6.821182e-05	ci right 9.556708e-05	k: 141	n:1740000
Cons ci ratio: 9.283925e-02	ci left: 9.760343e-04	ci right 1.071616e-03	k: 1780	n:1740000
KS ci ratio: 1.957328e-01	ci left: 2.079081e-04	ci right 2.535525e-04	k: 400	n:1740000
U2AF1   1740000 perm   1424 sec   (1222 perm/sec)   p_kst 2.298851e-04   p_cons 1.022989e-03   p_joint 8.103448e-05

Joint ci ratio: 3.277934e-01	ci left: 6.834637e-05	ci right 9.563935e-05	k: 142	n:1750000
Cons ci ratio: 9.265742e-02	ci left: 9.743641e-04	ci right 1.069585e-03	k: 1787	n:1750000
KS ci ratio: 1.952466e-01	ci left: 2.078070e-04	ci right 2.533024e-04	k: 402	n:1750000
U2AF1   1750000 perm   1438 sec   (1217 perm/sec)   p_kst 2.297143e-04   p_cons 1.021143e-03   p_joint 8.114286e-05

Joint ci ratio: 3.289457e-01	ci left: 6.743669e-05	ci right 9.448110e-05	k: 141	n:1760000
Cons ci ratio: 9.229669e-02	ci left: 9.765986e-04	ci right 1.071647e-03	k: 1801	n:1760000
KS ci ratio: 1.947639e-01	ci left: 2.077072e-04	ci right 2.530550e-04	k: 404	n:1760000
U2AF1   1760000 perm   1453 sec   (1211 perm/sec)   p_kst 2.295455e-04   p_cons 1.023295e-03   p_joint 8.011364e-05

Joint ci ratio: 3.289458e-01	ci left: 6.705568e-05	ci right 9.394731e-05	k: 141	n:1770000
Cons ci ratio: 9.206709e-02	ci left: 9.760486e-04	ci right 1.070794e-03	k: 1810	n:1770000
KS ci ratio: 1.945240e-01	ci left: 2.070711e-04	ci right 2.522177e-04	k: 405	n:1770000
U2AF1   1770000 perm   1468 sec   (1206 perm/sec)   p_kst 2.288136e-04   p_cons 1.022599e-03   p_joint 7.966102e-05

Joint ci ratio: 3.289459e-01	ci left: 6.667896e-05	ci right 9.341952e-05	k: 141	n:1780000
Cons ci ratio: 9.178873e-02	ci left: 9.766029e-04	ci right 1.071100e-03	k: 1821	n:1780000
KS ci ratio: 1.940466e-01	ci left: 2.069767e-04	ci right 2.519790e-04	k: 407	n:1780000
U2AF1   1780000 perm   1483 sec   (1200 perm/sec)   p_kst 2.286517e-04   p_cons 1.023034e-03   p_joint 7.921348e-05

Joint ci ratio: 3.277937e-01	ci left: 6.681907e-05	ci right 9.350217e-05	k: 142	n:1790000
Cons ci ratio: 9.153788e-02	ci left: 9.766055e-04	ci right 1.070831e-03	k: 1831	n:1790000
KS ci ratio: 1.928683e-01	ci left: 2.084785e-04	ci right 2.534997e-04	k: 412	n:1790000
U2AF1   1790000 perm   1499 sec   (1194 perm/sec)   p_kst 2.301676e-04   p_cons 1.022905e-03   p_joint 7.932961e-05

Joint ci ratio: 3.277938e-01	ci left: 6.644785e-05	ci right 9.298272e-05	k: 142	n:1800000
Cons ci ratio: 9.136358e-02	ci left: 9.749799e-04	ci right 1.068860e-03	k: 1838	n:1800000
KS ci ratio: 1.928684e-01	ci left: 2.073203e-04	ci right 2.520914e-04	k: 412	n:1800000
U2AF1   1800000 perm   1516 sec   (1188 perm/sec)   p_kst 2.288889e-04   p_cons 1.021111e-03   p_joint 7.888889e-05

Joint ci ratio: 3.277938e-01	ci left: 6.608073e-05	ci right 9.246901e-05	k: 142	n:1810000
Cons ci ratio: 9.119027e-02	ci left: 9.733723e-04	ci right 1.066910e-03	k: 1845	n:1810000
KS ci ratio: 1.921717e-01	ci left: 2.077524e-04	ci right 2.524358e-04	k: 415	n:1810000
U2AF1   1810000 perm   1531 sec   (1182 perm/sec)   p_kst 2.292818e-04   p_cons 1.019337e-03   p_joint 7.845304e-05

Joint ci ratio: 3.255252e-01	ci left: 6.672645e-05	ci right 9.314963e-05	k: 144	n:1820000
Cons ci ratio: 9.091977e-02	ci left: 9.739305e-04	ci right 1.067229e-03	k: 1856	n:1820000
KS ci ratio: 1.912543e-01	ci left: 2.087032e-04	ci right 2.533520e-04	k: 419	n:1820000
U2AF1   1820000 perm   1546 sec   (1178 perm/sec)   p_kst 2.302198e-04   p_cons 1.019780e-03   p_joint 7.912088e-05

Joint ci ratio: 3.244085e-01	ci left: 6.686370e-05	ci right 9.323148e-05	k: 145	n:1830000
Cons ci ratio: 9.070027e-02	ci left: 9.734148e-04	ci right 1.066427e-03	k: 1865	n:1830000
KS ci ratio: 1.903499e-01	ci left: 2.096442e-04	ci right 2.542576e-04	k: 423	n:1830000
U2AF1   1830000 perm   1561 sec   (1172 perm/sec)   p_kst 2.311475e-04   p_cons 1.019126e-03   p_joint 7.923497e-05

Joint ci ratio: 3.244085e-01	ci left: 6.650031e-05	ci right 9.272479e-05	k: 145	n:1840000
Cons ci ratio: 9.043409e-02	ci left: 9.739674e-04	ci right 1.066745e-03	k: 1876	n:1840000
KS ci ratio: 1.896800e-01	ci left: 2.100577e-04	ci right 2.545837e-04	k: 426	n:1840000
U2AF1   1840000 perm   1577 sec   (1167 perm/sec)   p_kst 2.315217e-04   p_cons 1.019565e-03   p_joint 7.880435e-05

Joint ci ratio: 3.233032e-01	ci left: 6.663745e-05	ci right 9.280791e-05	k: 146	n:1850000
Cons ci ratio: 9.012247e-02	ci left: 9.755711e-04	ci right 1.068165e-03	k: 1889	n:1850000
KS ci ratio: 1.892374e-01	ci left: 2.099521e-04	ci right 2.543398e-04	k: 428	n:1850000
U2AF1   1850000 perm   1592 sec   (1162 perm/sec)   p_kst 2.313514e-04   p_cons 1.021081e-03   p_joint 7.891892e-05

Joint ci ratio: 3.222091e-01	ci left: 6.677327e-05	ci right 9.288998e-05	k: 147	n:1860000
Cons ci ratio: 8.988500e-02	ci left: 9.755814e-04	ci right 1.067919e-03	k: 1899	n:1860000
KS ci ratio: 1.890173e-01	ci left: 2.093355e-04	ci right 2.535355e-04	k: 429	n:1860000
U2AF1   1860000 perm   1608 sec   (1157 perm/sec)   p_kst 2.306452e-04   p_cons 1.020968e-03   p_joint 7.903226e-05

Joint ci ratio: 3.424799e-01	ci left: 5.808302e-05	ci right 8.254729e-05	k: 130	n:1870000
Cons ci ratio: 8.964939e-02	ci left: 9.755919e-04	ci right 1.067676e-03	k: 1909	n:1870000
KS ci ratio: 1.885793e-01	ci left: 2.092350e-04	ci right 2.532997e-04	k: 431	n:1870000
U2AF1   1870000 perm   1623 sec   (1152 perm/sec)   p_kst 2.304813e-04   p_cons 1.020856e-03   p_joint 6.951872e-05

Joint ci ratio: 3.424800e-01	ci left: 5.777407e-05	ci right 8.210821e-05	k: 130	n:1880000
Cons ci ratio: 8.936905e-02	ci left: 9.766427e-04	ci right 1.068522e-03	k: 1921	n:1880000
KS ci ratio: 1.881443e-01	ci left: 2.091357e-04	ci right 2.530663e-04	k: 433	n:1880000
U2AF1   1880000 perm   1638 sec   (1147 perm/sec)   p_kst 2.303191e-04   p_cons 1.021809e-03   p_joint 6.914894e-05

Joint ci ratio: 3.424800e-01	ci left: 5.746838e-05	ci right 8.167378e-05	k: 130	n:1890000
Cons ci ratio: 8.913747e-02	ci left: 9.766482e-04	ci right 1.068278e-03	k: 1931	n:1890000
KS ci ratio: 1.879279e-01	ci left: 2.085333e-04	ci right 2.522813e-04	k: 434	n:1890000
U2AF1   1890000 perm   1654 sec   (1143 perm/sec)   p_kst 2.296296e-04   p_cons 1.021693e-03   p_joint 6.878307e-05

Joint ci ratio: 3.424801e-01	ci left: 5.716592e-05	ci right 8.124392e-05	k: 130	n:1900000
Cons ci ratio: 8.883902e-02	ci left: 9.781979e-04	ci right 1.069650e-03	k: 1944	n:1900000
KS ci ratio: 1.874974e-01	ci left: 2.084390e-04	ci right 2.520555e-04	k: 436	n:1900000
U2AF1   1900000 perm   1670 sec   (1138 perm/sec)   p_kst 2.294737e-04   p_cons 1.023158e-03   p_joint 6.842105e-05

Joint ci ratio: 3.411803e-01	ci left: 5.734524e-05	ci right 8.138689e-05	k: 131	n:1910000
Cons ci ratio: 8.849831e-02	ci left: 9.807557e-04	ci right 1.072077e-03	k: 1959	n:1910000
KS ci ratio: 1.872833e-01	ci left: 2.078467e-04	ci right 2.512840e-04	k: 437	n:1910000
U2AF1   1910000 perm   1686 sec   (1133 perm/sec)   p_kst 2.287958e-04   p_cons 1.025654e-03   p_joint 6.858639e-05

Joint ci ratio: 3.411804e-01	ci left: 5.704656e-05	ci right 8.096301e-05	k: 131	n:1920000
Cons ci ratio: 8.840829e-02	ci left: 9.776848e-04	ci right 1.068623e-03	k: 1963	n:1920000
KS ci ratio: 1.872834e-01	ci left: 2.067641e-04	ci right 2.499752e-04	k: 437	n:1920000
U2AF1   1920000 perm   1702 sec   (1128 perm/sec)   p_kst 2.276042e-04   p_cons 1.022396e-03   p_joint 6.822917e-05

Joint ci ratio: 3.386246e-01	ci left: 5.769882e-05	ci right 8.166789e-05	k: 133	n:1930000
Cons ci ratio: 8.825123e-02	ci left: 9.761659e-04	ci right 1.066793e-03	k: 1970	n:1930000
KS ci ratio: 1.866453e-01	ci left: 2.071745e-04	ci right 2.503071e-04	k: 440	n:1930000
U2AF1   1930000 perm   1718 sec   (1123 perm/sec)   p_kst 2.279793e-04   p_cons 1.020725e-03   p_joint 6.891192e-05

Joint ci ratio: 3.386246e-01	ci left: 5.740140e-05	ci right 8.124692e-05	k: 133	n:1940000
Cons ci ratio: 8.807272e-02	ci left: 9.751669e-04	ci right 1.065509e-03	k: 1978	n:1940000
KS ci ratio: 1.866454e-01	ci left: 2.061065e-04	ci right 2.490169e-04	k: 440	n:1940000
U2AF1   1940000 perm   1734 sec   (1119 perm/sec)   p_kst 2.268041e-04   p_cons 1.019588e-03   p_joint 6.855670e-05

Joint ci ratio: 3.373681e-01	ci left: 5.757633e-05	ci right 8.138646e-05	k: 134	n:1950000
Cons ci ratio: 8.787317e-02	ci left: 9.746798e-04	ci right 1.064761e-03	k: 1987	n:1950000
KS ci ratio: 1.853883e-01	ci left: 2.079832e-04	ci right 2.509599e-04	k: 446	n:1950000
U2AF1   1950000 perm   1751 sec   (1114 perm/sec)   p_kst 2.287179e-04   p_cons 1.018974e-03   p_joint 6.871795e-05

Joint ci ratio: 3.361255e-01	ci left: 5.774964e-05	ci right 8.152440e-05	k: 135	n:1960000
Cons ci ratio: 8.767496e-02	ci left: 9.741980e-04	ci right 1.064021e-03	k: 1996	n:1960000
KS ci ratio: 1.849750e-01	ci left: 2.078952e-04	ci right 2.507471e-04	k: 448	n:1960000
U2AF1   1960000 perm   1767 sec   (1109 perm/sec)   p_kst 2.285714e-04   p_cons 1.018367e-03   p_joint 6.887755e-05

Joint ci ratio: 3.361255e-01	ci left: 5.745650e-05	ci right 8.111058e-05	k: 135	n:1970000
Cons ci ratio: 8.723898e-02	ci left: 9.791832e-04	ci right 1.068995e-03	k: 2016	n:1970000
KS ci ratio: 1.845644e-01	ci left: 2.078082e-04	ci right 2.505364e-04	k: 450	n:1970000
U2AF1   1970000 perm   1784 sec   (1105 perm/sec)   p_kst 2.284264e-04   p_cons 1.023350e-03   p_joint 6.852792e-05

Joint ci ratio: 3.324783e-01	ci left: 5.855431e-05	ci right 8.234278e-05	k: 138	n:1980000
Cons ci ratio: 8.691628e-02	ci left: 9.816487e-04	ci right 1.071336e-03	k: 2031	n:1980000
KS ci ratio: 1.831483e-01	ci left: 2.101313e-04	ci right 2.529689e-04	k: 457	n:1980000
U2AF1   1980000 perm   1800 sec   (1100 perm/sec)   p_kst 2.308081e-04   p_cons 1.025758e-03   p_joint 6.969697e-05

Joint ci ratio: 3.324784e-01	ci left: 5.826006e-05	ci right 8.192900e-05	k: 138	n:1990000
Cons ci ratio: 8.657597e-02	ci left: 9.845816e-04	ci right 1.074167e-03	k: 2047	n:1990000
KS ci ratio: 1.827498e-01	ci left: 2.100344e-04	ci right 2.527487e-04	k: 459	n:1990000
U2AF1   1990000 perm   1817 sec   (1095 perm/sec)   p_kst 2.306533e-04   p_cons 1.028643e-03   p_joint 6.934673e-05

Joint ci ratio: 3.301118e-01	ci left: 5.888560e-05	ci right 8.260222e-05	k: 140	n:2000000
Cons ci ratio: 8.632341e-02	ci left: 9.855290e-04	ci right 1.074926e-03	k: 2059	n:2000000
KS ci ratio: 1.823538e-01	ci left: 2.099385e-04	ci right 2.525306e-04	k: 461	n:2000000
U2AF1   2000000 perm   1834 sec   (1091 perm/sec)   p_kst 2.305000e-04   p_cons 1.029500e-03   p_joint 7.000000e-05

Joint ci ratio: 3.301119e-01	ci left: 5.859263e-05	ci right 8.219127e-05	k: 140	n:2010000
Cons ci ratio: 8.617718e-02	ci left: 9.840333e-04	ci right 1.073136e-03	k: 2066	n:2010000
KS ci ratio: 1.819604e-01	ci left: 2.098437e-04	ci right 2.523146e-04	k: 463	n:2010000
U2AF1   2010000 perm   1851 sec   (1086 perm/sec)   p_kst 2.303483e-04   p_cons 1.027861e-03   p_joint 6.965174e-05

Joint ci ratio: 3.289474e-01	ci left: 5.875667e-05	ci right 8.232024e-05	k: 141	n:2020000
Cons ci ratio: 8.590740e-02	ci left: 9.854591e-04	ci right 1.074397e-03	k: 2079	n:2020000
KS ci ratio: 1.815695e-01	ci left: 2.097499e-04	ci right 2.521006e-04	k: 465	n:2020000
U2AF1   2020000 perm   1868 sec   (1082 perm/sec)   p_kst 2.301980e-04   p_cons 1.029208e-03   p_joint 6.980198e-05

Joint ci ratio: 3.289475e-01	ci left: 5.846723e-05	ci right 8.191473e-05	k: 141	n:2030000
Cons ci ratio: 8.561966e-02	ci left: 9.873533e-04	ci right 1.076149e-03	k: 2093	n:2030000
KS ci ratio: 1.813751e-01	ci left: 2.091869e-04	ci right 2.513737e-04	k: 466	n:2030000
U2AF1   2030000 perm   1884 sec   (1077 perm/sec)   p_kst 2.295567e-04   p_cons 1.031034e-03   p_joint 6.945813e-05

Joint ci ratio: 3.266551e-01	ci left: 5.908035e-05	ci right 8.257396e-05	k: 143	n:2040000
Cons ci ratio: 8.547698e-02	ci left: 9.858713e-04	ci right 1.074379e-03	k: 2100	n:2040000
KS ci ratio: 1.807952e-01	ci left: 2.095654e-04	ci right 2.516787e-04	k: 469	n:2040000
U2AF1   2040000 perm   1901 sec   (1073 perm/sec)   p_kst 2.299020e-04   p_cons 1.029412e-03   p_joint 7.009804e-05

Joint ci ratio: 3.233045e-01	ci left: 6.013620e-05	ci right 8.375354e-05	k: 146	n:2050000
Cons ci ratio: 8.521370e-02	ci left: 9.872683e-04	ci right 1.075614e-03	k: 2113	n:2050000
KS ci ratio: 1.802210e-01	ci left: 2.099404e-04	ci right 2.519804e-04	k: 472	n:2050000
U2AF1   2050000 perm   1918 sec   (1069 perm/sec)   p_kst 2.302439e-04   p_cons 1.030732e-03   p_joint 7.121951e-05

Joint ci ratio: 3.233045e-01	ci left: 5.984428e-05	ci right 8.334697e-05	k: 146	n:2060000
Cons ci ratio: 8.501287e-02	ci left: 9.872268e-04	ci right 1.075351e-03	k: 2123	n:2060000
KS ci ratio: 1.802211e-01	ci left: 2.089213e-04	ci right 2.507572e-04	k: 472	n:2060000
U2AF1   2060000 perm   1935 sec   (1065 perm/sec)   p_kst 2.291262e-04   p_cons 1.030583e-03   p_joint 7.087379e-05

Joint ci ratio: 3.233046e-01	ci left: 5.955517e-05	ci right 8.294433e-05	k: 146	n:2070000
Cons ci ratio: 8.483336e-02	ci left: 9.867130e-04	ci right 1.074596e-03	k: 2132	n:2070000
KS ci ratio: 1.802212e-01	ci left: 2.079120e-04	ci right 2.495459e-04	k: 472	n:2070000
U2AF1   2070000 perm   1952 sec   (1060 perm/sec)   p_kst 2.280193e-04   p_cons 1.029952e-03   p_joint 7.053140e-05

Joint ci ratio: 3.233046e-01	ci left: 5.926885e-05	ci right 8.254556e-05	k: 146	n:2080000
Cons ci ratio: 8.467476e-02	ci left: 9.857338e-04	ci right 1.073357e-03	k: 2140	n:2080000
KS ci ratio: 1.800310e-01	ci left: 2.073715e-04	ci right 2.488486e-04	k: 473	n:2080000
U2AF1   2080000 perm   1969 sec   (1056 perm/sec)   p_kst 2.274038e-04   p_cons 1.028846e-03   p_joint 7.019231e-05

Joint ci ratio: 3.233047e-01	ci left: 5.898526e-05	ci right 8.215061e-05	k: 146	n:2090000
Cons ci ratio: 8.451706e-02	ci left: 9.847642e-04	ci right 1.072130e-03	k: 2148	n:2090000
KS ci ratio: 1.800311e-01	ci left: 2.063793e-04	ci right 2.476579e-04	k: 473	n:2090000
U2AF1   2090000 perm   1986 sec   (1052 perm/sec)   p_kst 2.263158e-04   p_cons 1.027751e-03   p_joint 6.985646e-05

Joint ci ratio: 3.233048e-01	ci left: 5.870438e-05	ci right 8.175942e-05	k: 146	n:2100000
Cons ci ratio: 8.434066e-02	ci left: 9.842700e-04	ci right 1.071401e-03	k: 2157	n:2100000
KS ci ratio: 1.796525e-01	ci left: 2.063060e-04	ci right 2.474738e-04	k: 475	n:2100000
U2AF1   2100000 perm   2003 sec   (1049 perm/sec)   p_kst 2.261905e-04   p_cons 1.027143e-03   p_joint 6.952381e-05

Joint ci ratio: 3.506050e-01	ci left: 4.888022e-05	ci right 7.006800e-05	k: 124	n:2110000
Cons ci ratio: 8.420427e-02	ci left: 9.828528e-04	ci right 1.069711e-03	k: 2164	n:2110000
KS ci ratio: 1.790890e-01	ci left: 2.066863e-04	ci right 2.477865e-04	k: 478	n:2110000
U2AF1   2110000 perm   2020 sec   (1044 perm/sec)   p_kst 2.265403e-04   p_cons 1.025592e-03   p_joint 5.876777e-05

Joint ci ratio: 3.506050e-01	ci left: 4.864965e-05	ci right 6.973749e-05	k: 124	n:2120000
Cons ci ratio: 8.391398e-02	ci left: 9.851435e-04	ci right 1.071889e-03	k: 2179	n:2120000
KS ci ratio: 1.790891e-01	ci left: 2.057113e-04	ci right 2.466177e-04	k: 478	n:2120000
U2AF1   2120000 perm   2038 sec   (1040 perm/sec)   p_kst 2.254717e-04   p_cons 1.027830e-03   p_joint 5.849057e-05

Joint ci ratio: 3.492109e-01	ci left: 4.884948e-05	ci right 6.992067e-05	k: 125	n:2130000
Cons ci ratio: 8.377964e-02	ci left: 9.837359e-04	ci right 1.070212e-03	k: 2186	n:2130000
KS ci ratio: 1.789025e-01	ci left: 2.051940e-04	ci right 2.459504e-04	k: 479	n:2130000
U2AF1   2130000 perm   2055 sec   (1036 perm/sec)   p_kst 2.248826e-04   p_cons 1.026291e-03   p_joint 5.868545e-05

Joint ci ratio: 3.478333e-01	ci left: 4.904760e-05	ci right 7.010197e-05	k: 126	n:2140000
Cons ci ratio: 8.364595e-02	ci left: 9.823415e-04	ci right 1.068551e-03	k: 2193	n:2140000
KS ci ratio: 1.781616e-01	ci left: 2.060208e-04	ci right 2.467537e-04	k: 483	n:2140000
U2AF1   2140000 perm   2073 sec   (1032 perm/sec)   p_kst 2.257009e-04   p_cons 1.024766e-03   p_joint 5.887850e-05

Joint ci ratio: 3.451263e-01	ci left: 4.966876e-05	ci right 7.078677e-05	k: 128	n:2150000
Cons ci ratio: 8.341810e-02	ci left: 9.832373e-04	ci right 1.069279e-03	k: 2205	n:2150000
KS ci ratio: 1.770673e-01	ci left: 2.077292e-04	ci right 2.485206e-04	k: 489	n:2150000
U2AF1   2150000 perm   2091 sec   (1028 perm/sec)   p_kst 2.274419e-04   p_cons 1.025581e-03   p_joint 5.953488e-05

Joint ci ratio: 3.451264e-01	ci left: 4.943881e-05	ci right 7.045906e-05	k: 128	n:2160000
Cons ci ratio: 8.334270e-02	ci left: 9.804985e-04	ci right 1.066219e-03	k: 2209	n:2160000
KS ci ratio: 1.768870e-01	ci left: 2.072099e-04	ci right 2.478535e-04	k: 490	n:2160000
U2AF1   2160000 perm   2108 sec   (1025 perm/sec)   p_kst 2.268519e-04   p_cons 1.022685e-03   p_joint 5.925926e-05

Joint ci ratio: 3.451264e-01	ci left: 4.921098e-05	ci right 7.013436e-05	k: 128	n:2170000
Cons ci ratio: 8.317353e-02	ci left: 9.800411e-04	ci right 1.065539e-03	k: 2218	n:2170000
KS ci ratio: 1.768871e-01	ci left: 2.062550e-04	ci right 2.467113e-04	k: 490	n:2170000
U2AF1   2170000 perm   2125 sec   (1021 perm/sec)   p_kst 2.258065e-04   p_cons 1.022120e-03   p_joint 5.898618e-05

Joint ci ratio: 3.451265e-01	ci left: 4.898524e-05	ci right 6.981265e-05	k: 128	n:2180000
Cons ci ratio: 8.300540e-02	ci left: 9.795882e-04	ci right 1.064866e-03	k: 2227	n:2180000
KS ci ratio: 1.763491e-01	ci left: 2.066242e-04	ci right 2.470165e-04	k: 493	n:2180000
U2AF1   2180000 perm   2146 sec   (1016 perm/sec)   p_kst 2.261468e-04   p_cons 1.021560e-03   p_joint 5.871560e-05

Joint ci ratio: 3.437965e-01	ci left: 4.917869e-05	ci right 6.998984e-05	k: 129	n:2190000
Cons ci ratio: 8.278273e-02	ci left: 9.804811e-04	ci right 1.065596e-03	k: 2239	n:2190000
KS ci ratio: 1.761709e-01	ci left: 2.061172e-04	ci right 2.463654e-04	k: 494	n:2190000
U2AF1   2190000 perm   2166 sec   (1011 perm/sec)   p_kst 2.255708e-04   p_cons 1.022374e-03   p_joint 5.890411e-05

Joint ci ratio: 3.563538e-01	ci left: 4.522380e-05	ci right 6.522265e-05	k: 120	n:2200000
Cons ci ratio: 8.258020e-02	ci left: 9.809210e-04	ci right 1.065856e-03	k: 2250	n:2200000
KS ci ratio: 1.758161e-01	ci left: 2.060493e-04	ci right 2.461946e-04	k: 496	n:2200000
U2AF1   2200000 perm   2185 sec   (1007 perm/sec)   p_kst 2.254545e-04   p_cons 1.022727e-03   p_joint 5.454545e-05

Joint ci ratio: 3.563538e-01	ci left: 4.501917e-05	ci right 6.492752e-05	k: 120	n:2210000
Cons ci ratio: 8.228816e-02	ci left: 9.835731e-04	ci right 1.068422e-03	k: 2266	n:2210000
KS ci ratio: 1.758162e-01	ci left: 2.051170e-04	ci right 2.450806e-04	k: 496	n:2210000
U2AF1   2210000 perm   2203 sec   (1003 perm/sec)   p_kst 2.244344e-04   p_cons 1.025339e-03   p_joint 5.429864e-05

Joint ci ratio: 3.563538e-01	ci left: 4.481638e-05	ci right 6.463506e-05	k: 120	n:2220000
Cons ci ratio: 8.201718e-02	ci left: 9.857605e-04	ci right 1.070505e-03	k: 2281	n:2220000
KS ci ratio: 1.758163e-01	ci left: 2.041930e-04	ci right 2.439767e-04	k: 496	n:2220000
U2AF1   2220000 perm   2221 sec   (1000 perm/sec)   p_kst 2.234234e-04   p_cons 1.027477e-03   p_joint 5.405405e-05

Joint ci ratio: 3.548903e-01	ci left: 4.502378e-05	ci right 6.483354e-05	k: 121	n:2230000
Cons ci ratio: 8.182020e-02	ci left: 9.861718e-04	ci right 1.070738e-03	k: 2292	n:2230000
KS ci ratio: 1.754636e-01	ci left: 2.041348e-04	ci right 2.438188e-04	k: 498	n:2230000
U2AF1   2230000 perm   2239 sec   (996 perm/sec)   p_kst 2.233184e-04   p_cons 1.027803e-03   p_joint 5.426009e-05

Joint ci ratio: 3.534447e-01	ci left: 4.522950e-05	ci right 6.503009e-05	k: 122	n:2240000
Cons ci ratio: 8.166012e-02	ci left: 9.857050e-04	ci right 1.070058e-03	k: 2301	n:2240000
KS ci ratio: 1.747645e-01	ci left: 2.049309e-04	ci right 2.445943e-04	k: 502	n:2240000
U2AF1   2240000 perm   2258 sec   (992 perm/sec)   p_kst 2.241071e-04   p_cons 1.027232e-03   p_joint 5.446429e-05

Joint ci ratio: 3.506056e-01	ci left: 4.583877e-05	ci right 6.570824e-05	k: 124	n:2250000
Cons ci ratio: 8.144808e-02	ci left: 9.865486e-04	ci right 1.070744e-03	k: 2313	n:2250000
KS ci ratio: 1.742456e-01	ci left: 2.052952e-04	ci right 2.448987e-04	k: 505	n:2250000
U2AF1   2250000 perm   2277 sec   (988 perm/sec)   p_kst 2.244444e-04   p_cons 1.028000e-03   p_joint 5.511111e-05

Joint ci ratio: 3.478339e-01	ci left: 4.644329e-05	ci right 6.637976e-05	k: 126	n:2260000
Cons ci ratio: 8.132523e-02	ci left: 9.852176e-04	ci right 1.069167e-03	k: 2320	n:2260000
KS ci ratio: 1.737313e-01	ci left: 2.056565e-04	ci right 2.452002e-04	k: 508	n:2260000
U2AF1   2260000 perm   2296 sec   (984 perm/sec)   p_kst 2.247788e-04   p_cons 1.026549e-03   p_joint 5.575221e-05

Joint ci ratio: 3.478339e-01	ci left: 4.623869e-05	ci right 6.608734e-05	k: 126	n:2270000
Cons ci ratio: 8.109838e-02	ci left: 9.864881e-04	ci right 1.070300e-03	k: 2333	n:2270000
KS ci ratio: 1.733910e-01	ci left: 2.055933e-04	ci right 2.450394e-04	k: 510	n:2270000
U2AF1   2270000 perm   2315 sec   (981 perm/sec)   p_kst 2.246696e-04   p_cons 1.027753e-03   p_joint 5.550661e-05

Joint ci ratio: 3.478340e-01	ci left: 4.603589e-05	ci right 6.579748e-05	k: 126	n:2280000
Cons ci ratio: 8.101174e-02	ci left: 9.843099e-04	ci right 1.067843e-03	k: 2338	n:2280000
KS ci ratio: 1.728843e-01	ci left: 2.059503e-04	ci right 2.453374e-04	k: 513	n:2280000
U2AF1   2280000 perm   2334 sec   (977 perm/sec)   p_kst 2.250000e-04   p_cons 1.025439e-03   p_joint 5.526316e-05

Joint ci ratio: 3.464726e-01	ci left: 4.623347e-05	ci right 6.598476e-05	k: 127	n:2290000
Cons ci ratio: 8.085636e-02	ci left: 9.838621e-04	ci right 1.067190e-03	k: 2347	n:2290000
KS ci ratio: 1.720494e-01	ci left: 2.071402e-04	ci right 2.465436e-04	k: 518	n:2290000
U2AF1   2290000 perm   2352 sec   (974 perm/sec)   p_kst 2.262009e-04   p_cons 1.024891e-03   p_joint 5.545852e-05

Joint ci ratio: 3.464726e-01	ci left: 4.603245e-05	ci right 6.569788e-05	k: 127	n:2300000
Cons ci ratio: 8.061631e-02	ci left: 9.855486e-04	ci right 1.068759e-03	k: 2361	n:2300000
KS ci ratio: 1.720494e-01	ci left: 2.062395e-04	ci right 2.454717e-04	k: 518	n:2300000
U2AF1   2300000 perm   2371 sec   (970 perm/sec)   p_kst 2.252174e-04   p_cons 1.026522e-03   p_joint 5.521739e-05

Joint ci ratio: 3.451270e-01	ci left: 4.622849e-05	ci right 6.588382e-05	k: 128	n:2310000
Cons ci ratio: 8.046318e-02	ci left: 9.850998e-04	ci right 1.068107e-03	k: 2370	n:2310000
KS ci ratio: 1.717189e-01	ci left: 2.061753e-04	ci right 2.453120e-04	k: 520	n:2310000
U2AF1   2310000 perm   2390 sec   (966 perm/sec)   p_kst 2.251082e-04   p_cons 1.025974e-03   p_joint 5.541126e-05

Joint ci ratio: 3.451271e-01	ci left: 4.602922e-05	ci right 6.559984e-05	k: 128	n:2320000
Cons ci ratio: 8.036164e-02	ci left: 9.833878e-04	ci right 1.066142e-03	k: 2376	n:2320000
KS ci ratio: 1.717190e-01	ci left: 2.052866e-04	ci right 2.442547e-04	k: 520	n:2320000
U2AF1   2320000 perm   2410 sec   (963 perm/sec)   p_kst 2.241379e-04   p_cons 1.024138e-03   p_joint 5.517241e-05

Joint ci ratio: 3.437971e-01	ci left: 4.622373e-05	ci right 6.578446e-05	k: 129	n:2330000
Cons ci ratio: 8.019313e-02	ci left: 9.833730e-04	ci right 1.065944e-03	k: 2386	n:2330000
KS ci ratio: 1.712267e-01	ci left: 2.056378e-04	ci right 2.445491e-04	k: 523	n:2330000
U2AF1   2330000 perm   2429 sec   (959 perm/sec)   p_kst 2.244635e-04   p_cons 1.024034e-03   p_joint 5.536481e-05

Joint ci ratio: 3.437971e-01	ci left: 4.602619e-05	ci right 6.550333e-05	k: 129	n:2340000
Cons ci ratio: 7.999229e-02	ci left: 9.841960e-04	ci right 1.066619e-03	k: 2398	n:2340000
KS ci ratio: 1.707386e-01	ci left: 2.059862e-04	ci right 2.448409e-04	k: 526	n:2340000
U2AF1   2340000 perm   2448 sec   (956 perm/sec)   p_kst 2.247863e-04   p_cons 1.024786e-03   p_joint 5.512821e-05

Joint ci ratio: 3.424824e-01	ci left: 4.621920e-05	ci right 6.568666e-05	k: 130	n:2350000
Cons ci ratio: 7.971025e-02	ci left: 9.870976e-04	ci right 1.069459e-03	k: 2415	n:2350000
KS ci ratio: 1.699343e-01	ci left: 2.071467e-04	ci right 2.460173e-04	k: 531	n:2350000
U2AF1   2350000 perm   2467 sec   (952 perm/sec)   p_kst 2.259574e-04   p_cons 1.027660e-03   p_joint 5.531915e-05

Joint ci ratio: 3.424824e-01	ci left: 4.602336e-05	ci right 6.540832e-05	k: 130	n:2360000
Cons ci ratio: 7.956221e-02	ci left: 9.866526e-04	ci right 1.068817e-03	k: 2424	n:2360000
KS ci ratio: 1.696158e-01	ci left: 2.070804e-04	ci right 2.458583e-04	k: 533	n:2360000
U2AF1   2360000 perm   2487 sec   (949 perm/sec)   p_kst 2.258475e-04   p_cons 1.027119e-03   p_joint 5.508475e-05

Joint ci ratio: 3.437972e-01	ci left: 4.544358e-05	ci right 6.467418e-05	k: 129	n:2370000
Cons ci ratio: 7.936606e-02	ci left: 9.874522e-04	ci right 1.069471e-03	k: 2436	n:2370000
KS ci ratio: 1.692990e-01	ci left: 2.070147e-04	ci right 2.457005e-04	k: 535	n:2370000
U2AF1   2370000 perm   2506 sec   (946 perm/sec)   p_kst 2.257384e-04   p_cons 1.027848e-03   p_joint 5.443038e-05

Joint ci ratio: 3.464729e-01	ci left: 4.448514e-05	ci right 6.348955e-05	k: 127	n:2380000
Cons ci ratio: 7.923615e-02	ci left: 9.865979e-04	ci right 1.068405e-03	k: 2444	n:2380000
KS ci ratio: 1.688272e-01	ci left: 2.073521e-04	ci right 2.459820e-04	k: 538	n:2380000
U2AF1   2380000 perm   2526 sec   (942 perm/sec)   p_kst 2.260504e-04   p_cons 1.026891e-03   p_joint 5.336134e-05

Joint ci ratio: 3.451274e-01	ci left: 4.468108e-05	ci right 6.367851e-05	k: 128	n:2390000
Cons ci ratio: 7.904239e-02	ci left: 9.873915e-04	ci right 1.069055e-03	k: 2456	n:2390000
KS ci ratio: 1.685149e-01	ci left: 2.072860e-04	ci right 2.458249e-04	k: 540	n:2390000
U2AF1   2390000 perm   2546 sec   (939 perm/sec)   p_kst 2.259414e-04   p_cons 1.027615e-03   p_joint 5.355649e-05

Joint ci ratio: 3.451274e-01	ci left: 4.449491e-05	ci right 6.341319e-05	k: 128	n:2400000
Cons ci ratio: 7.889804e-02	ci left: 9.869533e-04	ci right 1.068425e-03	k: 2465	n:2400000
KS ci ratio: 1.682042e-01	ci left: 2.072205e-04	ci right 2.456690e-04	k: 542	n:2400000
U2AF1   2400000 perm   2566 sec   (935 perm/sec)   p_kst 2.258333e-04   p_cons 1.027083e-03   p_joint 5.333333e-05

Joint ci ratio: 3.437974e-01	ci left: 4.468933e-05	ci right 6.360076e-05	k: 129	n:2410000
Cons ci ratio: 7.869085e-02	ci left: 9.881460e-04	ci right 1.069492e-03	k: 2478	n:2410000
KS ci ratio: 1.678953e-01	ci left: 2.071556e-04	ci right 2.455144e-04	k: 544	n:2410000
U2AF1   2410000 perm   2585 sec   (932 perm/sec)   p_kst 2.257261e-04   p_cons 1.028216e-03   p_joint 5.352697e-05

Joint ci ratio: 3.424826e-01	ci left: 4.488228e-05	ci right 6.378664e-05	k: 130	n:2420000
Cons ci ratio: 7.848528e-02	ci left: 9.893291e-04	ci right 1.070550e-03	k: 2491	n:2420000
KS ci ratio: 1.675881e-01	ci left: 2.070914e-04	ci right 2.453610e-04	k: 546	n:2420000
U2AF1   2420000 perm   2605 sec   (929 perm/sec)   p_kst 2.256198e-04   p_cons 1.029339e-03   p_joint 5.371901e-05

Joint ci ratio: 3.424827e-01	ci left: 4.469758e-05	ci right 6.352414e-05	k: 130	n:2430000
Cons ci ratio: 7.840675e-02	ci left: 9.872750e-04	ci right 1.068243e-03	k: 2496	n:2430000
KS ci ratio: 1.674352e-01	ci left: 2.066334e-04	ci right 2.447800e-04	k: 547	n:2430000
U2AF1   2430000 perm   2625 sec   (926 perm/sec)   p_kst 2.251029e-04   p_cons 1.027160e-03   p_joint 5.349794e-05

Joint ci ratio: 3.386271e-01	ci left: 4.563877e-05	ci right 6.459805e-05	k: 133	n:2440000
Cons ci ratio: 7.820340e-02	ci left: 9.884523e-04	ci right 1.069297e-03	k: 2509	n:2440000
KS ci ratio: 1.666764e-01	ci left: 2.077501e-04	ci right 2.459116e-04	k: 552	n:2440000
U2AF1   2440000 perm   2645 sec   (922 perm/sec)   p_kst 2.262295e-04   p_cons 1.028279e-03   p_joint 5.450820e-05

Joint ci ratio: 3.386271e-01	ci left: 4.545249e-05	ci right 6.433438e-05	k: 133	n:2450000
Cons ci ratio: 7.800162e-02	ci left: 9.896203e-04	ci right 1.070342e-03	k: 2522	n:2450000
KS ci ratio: 1.663759e-01	ci left: 2.076844e-04	ci right 2.457582e-04	k: 554	n:2450000
U2AF1   2450000 perm   2665 sec   (919 perm/sec)   p_kst 2.261224e-04   p_cons 1.029388e-03   p_joint 5.428571e-05

Joint ci ratio: 3.386271e-01	ci left: 4.526772e-05	ci right 6.407286e-05	k: 133	n:2460000
Cons ci ratio: 7.784750e-02	ci left: 9.895833e-04	ci right 1.070135e-03	k: 2532	n:2460000
KS ci ratio: 1.662262e-01	ci left: 2.072298e-04	ci right 2.451826e-04	k: 555	n:2460000
U2AF1   2460000 perm   2685 sec   (916 perm/sec)   p_kst 2.256098e-04   p_cons 1.029268e-03   p_joint 5.406504e-05

Joint ci ratio: 3.386272e-01	ci left: 4.508445e-05	ci right 6.381346e-05	k: 133	n:2470000
Cons ci ratio: 7.764846e-02	ci left: 9.907378e-04	ci right 1.071168e-03	k: 2545	n:2470000
KS ci ratio: 1.662263e-01	ci left: 2.063908e-04	ci right 2.441899e-04	k: 555	n:2470000
U2AF1   2470000 perm   2705 sec   (913 perm/sec)   p_kst 2.246964e-04   p_cons 1.030364e-03   p_joint 5.384615e-05

Joint ci ratio: 3.361279e-01	ci left: 4.564080e-05	ci right 6.443066e-05	k: 135	n:2480000
Cons ci ratio: 7.749642e-02	ci left: 9.906969e-04	ci right 1.070959e-03	k: 2555	n:2480000
KS ci ratio: 1.657796e-01	ci left: 2.067180e-04	ci right 2.444652e-04	k: 558	n:2480000
U2AF1   2480000 perm   2726 sec   (910 perm/sec)   p_kst 2.250000e-04   p_cons 1.030242e-03   p_joint 5.443548e-05

Joint ci ratio: 3.348989e-01	ci left: 4.582528e-05	ci right 6.460722e-05	k: 136	n:2490000
Cons ci ratio: 7.730005e-02	ci left: 9.918381e-04	ci right 1.071980e-03	k: 2568	n:2490000
KS ci ratio: 1.656316e-01	ci left: 2.062727e-04	ci right 2.439016e-04	k: 559	n:2490000
U2AF1   2490000 perm   2746 sec   (907 perm/sec)   p_kst 2.244980e-04   p_cons 1.031325e-03   p_joint 5.461847e-05

Joint ci ratio: 3.348990e-01	ci left: 4.564198e-05	ci right 6.434879e-05	k: 136	n:2500000
Cons ci ratio: 7.715005e-02	ci left: 9.917935e-04	ci right 1.071770e-03	k: 2578	n:2500000
KS ci ratio: 1.654839e-01	ci left: 2.058311e-04	ci right 2.433426e-04	k: 560	n:2500000
U2AF1   2500000 perm   2767 sec   (904 perm/sec)   p_kst 2.240000e-04   p_cons 1.031200e-03   p_joint 5.440000e-05

Joint ci ratio: 3.348990e-01	ci left: 4.546013e-05	ci right 6.409242e-05	k: 136	n:2510000
Cons ci ratio: 7.697116e-02	ci left: 9.925309e-04	ci right 1.072373e-03	k: 2590	n:2510000
KS ci ratio: 1.654840e-01	ci left: 2.050110e-04	ci right 2.423731e-04	k: 560	n:2510000
U2AF1   2510000 perm   2787 sec   (901 perm/sec)   p_kst 2.231076e-04   p_cons 1.031873e-03   p_joint 5.418327e-05

Joint ci ratio: 3.411832e-01	ci left: 4.346399e-05	ci right 6.168619e-05	k: 131	n:2520000
Cons ci ratio: 7.688225e-02	ci left: 9.909274e-04	ci right 1.070544e-03	k: 2596	n:2520000
KS ci ratio: 1.653367e-01	ci left: 2.045779e-04	ci right 2.418246e-04	k: 561	n:2520000
U2AF1   2520000 perm   2808 sec   (897 perm/sec)   p_kst 2.226190e-04   p_cons 1.030159e-03   p_joint 5.198413e-05

Joint ci ratio: 3.398981e-01	ci left: 4.365366e-05	ci right 6.187130e-05	k: 132	n:2530000
Cons ci ratio: 7.671994e-02	ci left: 9.912750e-04	ci right 1.070744e-03	k: 2607	n:2530000
KS ci ratio: 1.648972e-01	ci left: 2.049060e-04	ci right 2.421035e-04	k: 564	n:2530000
U2AF1   2530000 perm   2829 sec   (894 perm/sec)   p_kst 2.229249e-04   p_cons 1.030435e-03   p_joint 5.217391e-05

Joint ci ratio: 3.398981e-01	ci left: 4.348179e-05	ci right 6.162772e-05	k: 132	n:2540000
Cons ci ratio: 7.660257e-02	ci left: 9.904616e-04	ci right 1.069738e-03	k: 2615	n:2540000
KS ci ratio: 1.646061e-01	ci left: 2.048543e-04	ci right 2.419701e-04	k: 566	n:2540000
U2AF1   2540000 perm   2849 sec   (891 perm/sec)   p_kst 2.228346e-04   p_cons 1.029528e-03   p_joint 5.196850e-05

Joint ci ratio: 3.398982e-01	ci left: 4.331128e-05	ci right 6.138604e-05	k: 132	n:2550000
Cons ci ratio: 7.650034e-02	ci left: 9.892699e-04	ci right 1.068341e-03	k: 2622	n:2550000
KS ci ratio: 1.644612e-01	ci left: 2.044269e-04	ci right 2.414295e-04	k: 567	n:2550000
U2AF1   2550000 perm   2870 sec   (888 perm/sec)   p_kst 2.223529e-04   p_cons 1.028235e-03   p_joint 5.176471e-05

Joint ci ratio: 3.398982e-01	ci left: 4.314209e-05	ci right 6.114625e-05	k: 132	n:2560000
Cons ci ratio: 7.634042e-02	ci left: 9.896204e-04	ci right 1.068547e-03	k: 2633	n:2560000
KS ci ratio: 1.643167e-01	ci left: 2.040029e-04	ci right 2.408931e-04	k: 568	n:2560000
U2AF1   2560000 perm   2891 sec   (885 perm/sec)   p_kst 2.218750e-04   p_cons 1.028516e-03   p_joint 5.156250e-05

Joint ci ratio: 3.386275e-01	ci left: 4.333018e-05	ci right 6.133046e-05	k: 133	n:2570000
Cons ci ratio: 7.613829e-02	ci left: 9.911133e-04	ci right 1.069940e-03	k: 2647	n:2570000
KS ci ratio: 1.633150e-01	ci left: 2.058212e-04	ci right 2.427911e-04	k: 575	n:2570000
U2AF1   2570000 perm   2912 sec   (882 perm/sec)   p_kst 2.237354e-04   p_cons 1.029961e-03   p_joint 5.175097e-05

Joint ci ratio: 2.771751e-01	ci left: 6.678727e-05	ci right 8.862458e-05	k: 199	n:2580000
Cons ci ratio: 7.598063e-02	ci left: 9.914543e-04	ci right 1.070138e-03	k: 2658	n:2580000
KS ci ratio: 1.627508e-01	ci left: 2.065106e-04	ci right 2.434636e-04	k: 579	n:2580000
U2AF1   2580000 perm   2933 sec   (880 perm/sec)   p_kst 2.244186e-04   p_cons 1.030233e-03   p_joint 7.713178e-05

Joint ci ratio: 2.771751e-01	ci left: 6.652940e-05	ci right 8.828241e-05	k: 199	n:2590000
Cons ci ratio: 7.580974e-02	ci left: 9.921716e-04	ci right 1.070727e-03	k: 2670	n:2590000
KS ci ratio: 1.624709e-01	ci left: 2.064540e-04	ci right 2.433272e-04	k: 581	n:2590000
U2AF1   2590000 perm   2955 sec   (877 perm/sec)   p_kst 2.243243e-04   p_cons 1.030888e-03   p_joint 7.683398e-05

Joint ci ratio: 2.757995e-01	ci left: 6.698943e-05	ci right 8.876528e-05	k: 201	n:2600000
Cons ci ratio: 7.565410e-02	ci left: 9.925062e-04	ci right 1.070920e-03	k: 2681	n:2600000
KS ci ratio: 1.623316e-01	ci left: 2.060290e-04	ci right 2.427916e-04	k: 582	n:2600000
U2AF1   2600000 perm   2976 sec   (874 perm/sec)   p_kst 2.238462e-04   p_cons 1.031154e-03   p_joint 7.730769e-05

Joint ci ratio: 2.751193e-01	ci left: 6.708944e-05	ci right 8.883472e-05	k: 202	n:2610000
Cons ci ratio: 7.549942e-02	ci left: 9.928384e-04	ci right 1.071111e-03	k: 2692	n:2610000
KS ci ratio: 1.620539e-01	ci left: 2.059748e-04	ci right 2.426587e-04	k: 584	n:2610000
U2AF1   2610000 perm   2998 sec   (871 perm/sec)   p_kst 2.237548e-04   p_cons 1.031418e-03   p_joint 7.739464e-05

Joint ci ratio: 2.744442e-01	ci left: 6.718876e-05	ci right 8.890357e-05	k: 203	n:2620000
Cons ci ratio: 7.535964e-02	ci left: 9.927937e-04	ci right 1.070911e-03	k: 2702	n:2620000
KS ci ratio: 1.616399e-01	ci left: 2.062873e-04	ci right 2.429239e-04	k: 587	n:2620000
U2AF1   2620000 perm   3019 sec   (868 perm/sec)   p_kst 2.240458e-04   p_cons 1.031298e-03   p_joint 7.748092e-05

Joint ci ratio: 2.744442e-01	ci left: 6.693329e-05	ci right 8.856553e-05	k: 203	n:2630000
Cons ci ratio: 7.524840e-02	ci left: 9.920034e-04	ci right 1.069938e-03	k: 2710	n:2630000
KS ci ratio: 1.615027e-01	ci left: 2.058678e-04	ci right 2.423958e-04	k: 588	n:2630000
U2AF1   2630000 perm   3041 sec   (865 perm/sec)   p_kst 2.235741e-04   p_cons 1.030418e-03   p_joint 7.718631e-05

Joint ci ratio: 2.737740e-01	ci left: 6.703251e-05	ci right 8.863481e-05	k: 204	n:2640000
Cons ci ratio: 7.505480e-02	ci left: 9.934492e-04	ci right 1.071288e-03	k: 2724	n:2640000
KS ci ratio: 1.612292e-01	ci left: 2.058149e-04	ci right 2.422658e-04	k: 590	n:2640000
U2AF1   2640000 perm   3062 sec   (862 perm/sec)   p_kst 2.234848e-04   p_cons 1.031818e-03   p_joint 7.727273e-05

Joint ci ratio: 2.737740e-01	ci left: 6.677956e-05	ci right 8.830034e-05	k: 204	n:2650000
Cons ci ratio: 7.487637e-02	ci left: 9.945141e-04	ci right 1.072243e-03	k: 2737	n:2650000
KS ci ratio: 1.609571e-01	ci left: 2.057626e-04	ci right 2.421367e-04	k: 592	n:2650000
U2AF1   2650000 perm   3084 sec   (859 perm/sec)   p_kst 2.233962e-04   p_cons 1.032830e-03   p_joint 7.698113e-05

Joint ci ratio: 2.731087e-01	ci left: 6.687868e-05	ci right 8.837004e-05	k: 205	n:2660000
Cons ci ratio: 7.472640e-02	ci left: 9.948333e-04	ci right 1.072425e-03	k: 2748	n:2660000
KS ci ratio: 1.608216e-01	ci left: 2.053498e-04	ci right 2.416175e-04	k: 593	n:2660000
U2AF1   2660000 perm   3106 sec   (856 perm/sec)   p_kst 2.229323e-04   p_cons 1.033083e-03   p_joint 7.706767e-05

Joint ci ratio: 2.731088e-01	ci left: 6.662819e-05	ci right 8.803907e-05	k: 205	n:2670000
Cons ci ratio: 7.463149e-02	ci left: 9.936801e-04	ci right 1.071079e-03	k: 2755	n:2670000
KS ci ratio: 1.605515e-01	ci left: 2.052997e-04	ci right 2.414917e-04	k: 595	n:2670000
U2AF1   2670000 perm   3128 sec   (854 perm/sec)   p_kst 2.228464e-04   p_cons 1.031835e-03   p_joint 7.677903e-05

Joint ci ratio: 2.731088e-01	ci left: 6.637958e-05	ci right 8.771056e-05	k: 205	n:2680000
Cons ci ratio: 7.453694e-02	ci left: 9.925355e-04	ci right 1.069743e-03	k: 2762	n:2680000
KS ci ratio: 1.598822e-01	ci left: 2.063245e-04	ci right 2.425310e-04	k: 600	n:2680000
U2AF1   2680000 perm   3150 sec   (851 perm/sec)   p_kst 2.238806e-04   p_cons 1.030597e-03   p_joint 7.649254e-05

Joint ci ratio: 2.731088e-01	ci left: 6.613281e-05	ci right 8.738450e-05	k: 205	n:2690000
Cons ci ratio: 7.441586e-02	ci left: 9.921292e-04	ci right 1.069174e-03	k: 2771	n:2690000
KS ci ratio: 1.593527e-01	ci left: 2.069851e-04	ci right 2.431757e-04	k: 604	n:2690000
U2AF1   2690000 perm   3172 sec   (848 perm/sec)   p_kst 2.245353e-04   p_cons 1.030112e-03   p_joint 7.620818e-05

Joint ci ratio: 2.731089e-01	ci left: 6.588788e-05	ci right 8.706086e-05	k: 205	n:2700000
Cons ci ratio: 7.412214e-02	ci left: 9.964516e-04	ci right 1.073514e-03	k: 2793	n:2700000
KS ci ratio: 1.590900e-01	ci left: 2.069297e-04	ci right 2.430453e-04	k: 606	n:2700000
U2AF1   2700000 perm   3194 sec   (845 perm/sec)   p_kst 2.244444e-04   p_cons 1.034444e-03   p_joint 7.592593e-05

Joint ci ratio: 2.731089e-01	ci left: 6.564475e-05	ci right 8.673960e-05	k: 205	n:2710000
Cons ci ratio: 7.392391e-02	ci left: 9.982073e-04	ci right 1.075190e-03	k: 2808	n:2710000
KS ci ratio: 1.588285e-01	ci left: 2.068748e-04	ci right 2.429158e-04	k: 608	n:2710000
U2AF1   2710000 perm   3216 sec   (843 perm/sec)   p_kst 2.243542e-04   p_cons 1.036162e-03   p_joint 7.564576e-05

Joint ci ratio: 2.724484e-01	ci left: 6.574591e-05	ci right 8.681344e-05	k: 206	n:2720000
Cons ci ratio: 7.377958e-02	ci left: 9.985068e-04	ci right 1.075356e-03	k: 2819	n:2720000
KS ci ratio: 1.588286e-01	ci left: 2.061142e-04	ci right 2.420227e-04	k: 608	n:2720000
U2AF1   2720000 perm   3238 sec   (840 perm/sec)   p_kst 2.235294e-04   p_cons 1.036397e-03   p_joint 7.573529e-05

Joint ci ratio: 2.717927e-01	ci left: 6.584639e-05	ci right 8.688667e-05	k: 207	n:2730000
Cons ci ratio: 7.367518e-02	ci left: 9.977256e-04	ci right 1.074401e-03	k: 2827	n:2730000
KS ci ratio: 1.584388e-01	ci left: 2.064145e-04	ci right 2.422787e-04	k: 611	n:2730000
U2AF1   2730000 perm   3261 sec   (837 perm/sec)   p_kst 2.238095e-04   p_cons 1.035531e-03   p_joint 7.582418e-05

Joint ci ratio: 2.744446e-01	ci left: 6.424618e-05	ci right 8.501000e-05	k: 203	n:2740000
Cons ci ratio: 7.346757e-02	ci left: 9.998163e-04	ci right 1.076427e-03	k: 2843	n:2740000
KS ci ratio: 1.581806e-01	ci left: 2.063622e-04	ci right 2.421533e-04	k: 613	n:2740000
U2AF1   2740000 perm   3283 sec   (835 perm/sec)   p_kst 2.237226e-04   p_cons 1.037591e-03   p_joint 7.408759e-05

Joint ci ratio: 2.737744e-01	ci left: 6.435120e-05	ci right 8.508944e-05	k: 204	n:2750000
Cons ci ratio: 7.337737e-02	ci left: 9.986793e-04	ci right 1.075105e-03	k: 2850	n:2750000
KS ci ratio: 1.579236e-01	ci left: 2.063103e-04	ci right 2.420287e-04	k: 615	n:2750000
U2AF1   2750000 perm   3306 sec   (832 perm/sec)   p_kst 2.236364e-04   p_cons 1.036364e-03   p_joint 7.418182e-05

Joint ci ratio: 2.731091e-01	ci left: 6.445552e-05	ci right 8.516824e-05	k: 205	n:2760000
Cons ci ratio: 7.321061e-02	ci left: 9.996848e-04	ci right 1.076006e-03	k: 2863	n:2760000
KS ci ratio: 1.576678e-01	ci left: 2.062588e-04	ci right 2.419050e-04	k: 617	n:2760000
U2AF1   2760000 perm   3328 sec   (829 perm/sec)   p_kst 2.235507e-04   p_cons 1.037319e-03   p_joint 7.427536e-05

Joint ci ratio: 2.704954e-01	ci left: 6.556849e-05	ci right 8.640297e-05	k: 209	n:2770000
Cons ci ratio: 7.310861e-02	ci left: 9.989110e-04	ci right 1.075062e-03	k: 2871	n:2770000
KS ci ratio: 1.571600e-01	ci left: 2.069014e-04	ci right 2.425326e-04	k: 621	n:2770000
U2AF1   2770000 perm   3351 sec   (827 perm/sec)   p_kst 2.241877e-04   p_cons 1.036462e-03   p_joint 7.545126e-05

Joint ci ratio: 2.843769e-01	ci left: 5.863848e-05	ci right 7.839908e-05	k: 189	n:2780000
Cons ci ratio: 7.296899e-02	ci left: 9.992024e-04	ci right 1.075224e-03	k: 2882	n:2780000
KS ci ratio: 1.566570e-01	ci left: 2.075395e-04	ci right 2.431555e-04	k: 625	n:2780000
U2AF1   2780000 perm   3374 sec   (824 perm/sec)   p_kst 2.248201e-04   p_cons 1.036691e-03   p_joint 6.798561e-05

Joint ci ratio: 2.843770e-01	ci left: 5.842830e-05	ci right 7.811808e-05	k: 189	n:2790000
Cons ci ratio: 7.284278e-02	ci left: 9.991399e-04	ci right 1.075020e-03	k: 2892	n:2790000
KS ci ratio: 1.566571e-01	ci left: 2.067956e-04	ci right 2.422840e-04	k: 625	n:2790000
U2AF1   2790000 perm   3397 sec   (821 perm/sec)   p_kst 2.240143e-04   p_cons 1.036559e-03   p_joint 6.774194e-05

Joint ci ratio: 2.843770e-01	ci left: 5.821963e-05	ci right 7.783909e-05	k: 189	n:2800000
Cons ci ratio: 7.276741e-02	ci left: 9.976754e-04	ci right 1.073363e-03	k: 2898	n:2800000
KS ci ratio: 1.564075e-01	ci left: 2.067433e-04	ci right 2.421609e-04	k: 627	n:2800000
U2AF1   2800000 perm   3420 sec   (819 perm/sec)   p_kst 2.239286e-04   p_cons 1.035000e-03   p_joint 6.750000e-05

Joint ci ratio: 2.828919e-01	ci left: 5.867357e-05	ci right 7.832431e-05	k: 191	n:2810000
Cons ci ratio: 7.260477e-02	ci left: 9.986672e-04	ci right 1.074253e-03	k: 2911	n:2810000
KS ci ratio: 1.561590e-01	ci left: 2.066915e-04	ci right 2.420387e-04	k: 629	n:2810000
U2AF1   2810000 perm   3443 sec   (816 perm/sec)   p_kst 2.238434e-04   p_cons 1.035943e-03   p_joint 6.797153e-05

Joint ci ratio: 2.821581e-01	ci left: 5.879499e-05	ci right 7.842623e-05	k: 192	n:2820000
Cons ci ratio: 7.245561e-02	ci left: 9.993040e-04	ci right 1.074776e-03	k: 2923	n:2820000
KS ci ratio: 1.559117e-01	ci left: 2.066401e-04	ci right 2.419173e-04	k: 631	n:2820000
U2AF1   2820000 perm   3466 sec   (814 perm/sec)   p_kst 2.237589e-04   p_cons 1.036525e-03   p_joint 6.808511e-05

Joint ci ratio: 2.814299e-01	ci left: 5.891563e-05	ci right 7.852737e-05	k: 193	n:2830000
Cons ci ratio: 7.231970e-02	ci left: 9.995895e-04	ci right 1.074936e-03	k: 2934	n:2830000
KS ci ratio: 1.555430e-01	ci left: 2.069287e-04	ci right 2.421638e-04	k: 634	n:2830000
U2AF1   2830000 perm   3489 sec   (811 perm/sec)   p_kst 2.240283e-04   p_cons 1.036749e-03   p_joint 6.819788e-05

Joint ci ratio: 2.814299e-01	ci left: 5.870817e-05	ci right 7.825087e-05	k: 193	n:2840000
Cons ci ratio: 7.219682e-02	ci left: 9.995273e-04	ci right 1.074735e-03	k: 2944	n:2840000
KS ci ratio: 1.555430e-01	ci left: 2.062000e-04	ci right 2.413111e-04	k: 634	n:2840000
U2AF1   2840000 perm   3513 sec   (808 perm/sec)   p_kst 2.232394e-04   p_cons 1.036620e-03   p_joint 6.795775e-05

Joint ci ratio: 2.807074e-01	ci left: 5.882833e-05	ci right 7.835185e-05	k: 194	n:2850000
Cons ci ratio: 7.202577e-02	ci left: 1.000844e-03	ci right 1.075965e-03	k: 2958	n:2850000
KS ci ratio: 1.552987e-01	ci left: 2.061510e-04	ci right 2.411934e-04	k: 636	n:2850000
U2AF1   2850000 perm   3536 sec   (806 perm/sec)   p_kst 2.231579e-04   p_cons 1.037895e-03   p_joint 6.807018e-05

Joint ci ratio: 2.792788e-01	ci left: 5.927284e-05	ci right 7.882616e-05	k: 196	n:2860000
Cons ci ratio: 7.196507e-02	ci left: 9.990612e-04	ci right 1.073983e-03	k: 2963	n:2860000
KS ci ratio: 1.549342e-01	ci left: 2.064384e-04	ci right 2.414397e-04	k: 639	n:2860000
U2AF1   2860000 perm   3559 sec   (804 perm/sec)   p_kst 2.234266e-04   p_cons 1.036014e-03   p_joint 6.853147e-05

Joint ci ratio: 2.792788e-01	ci left: 5.906632e-05	ci right 7.855150e-05	k: 196	n:2870000
Cons ci ratio: 7.185607e-02	ci left: 9.986596e-04	ci right 1.073433e-03	k: 2972	n:2870000
KS ci ratio: 1.548134e-01	ci left: 2.060541e-04	ci right 2.409604e-04	k: 640	n:2870000
U2AF1   2870000 perm   3583 sec   (801 perm/sec)   p_kst 2.229965e-04   p_cons 1.035540e-03   p_joint 6.829268e-05

Joint ci ratio: 2.792788e-01	ci left: 5.886123e-05	ci right 7.827876e-05	k: 196	n:2880000
Cons ci ratio: 7.179579e-02	ci left: 9.968970e-04	ci right 1.071473e-03	k: 2977	n:2880000
KS ci ratio: 1.546928e-01	ci left: 2.056724e-04	ci right 2.404844e-04	k: 641	n:2880000
U2AF1   2880000 perm   3606 sec   (799 perm/sec)   p_kst 2.225694e-04   p_cons 1.033681e-03   p_joint 6.805556e-05

Joint ci ratio: 2.785727e-01	ci left: 5.897938e-05	ci right 7.837806e-05	k: 197	n:2890000
Cons ci ratio: 7.160363e-02	ci left: 9.988846e-04	ci right 1.073401e-03	k: 2993	n:2890000
KS ci ratio: 1.538562e-01	ci left: 2.072894e-04	ci right 2.421678e-04	k: 648	n:2890000
U2AF1   2890000 perm   3630 sec   (796 perm/sec)   p_kst 2.242215e-04   p_cons 1.035640e-03   p_joint 6.816609e-05

Joint ci ratio: 2.778719e-01	ci left: 5.909677e-05	ci right 7.847661e-05	k: 198	n:2900000
Cons ci ratio: 7.154398e-02	ci left: 9.971334e-04	ci right 1.071455e-03	k: 2998	n:2900000
KS ci ratio: 1.536196e-01	ci left: 2.072377e-04	ci right 2.420489e-04	k: 650	n:2900000
U2AF1   2900000 perm   3654 sec   (794 perm/sec)   p_kst 2.241379e-04   p_cons 1.033793e-03   p_joint 6.827586e-05

Joint ci ratio: 2.751204e-01	ci left: 6.017298e-05	ci right 7.967655e-05	k: 202	n:2910000
Cons ci ratio: 7.143688e-02	ci left: 9.967443e-04	ci right 1.070921e-03	k: 3007	n:2910000
KS ci ratio: 1.533842e-01	ci left: 2.071864e-04	ci right 2.419308e-04	k: 652	n:2910000
U2AF1   2910000 perm   3677 sec   (791 perm/sec)   p_kst 2.240550e-04   p_cons 1.033333e-03   p_joint 6.941581e-05

Joint ci ratio: 2.744453e-01	ci left: 6.028578e-05	ci right 7.976969e-05	k: 203	n:2920000
Cons ci ratio: 7.130661e-02	ci left: 9.970307e-04	ci right 1.071088e-03	k: 3018	n:2920000
KS ci ratio: 1.531499e-01	ci left: 2.071355e-04	ci right 2.418135e-04	k: 654	n:2920000
U2AF1   2920000 perm   3701 sec   (789 perm/sec)   p_kst 2.239726e-04   p_cons 1.033562e-03   p_joint 6.952055e-05

Joint ci ratio: 2.744453e-01	ci left: 6.008002e-05	ci right 7.949744e-05	k: 203	n:2930000
Cons ci ratio: 7.117705e-02	ci left: 9.973153e-04	ci right 1.071253e-03	k: 3029	n:2930000
KS ci ratio: 1.530331e-01	ci left: 2.067568e-04	ci right 2.413425e-04	k: 655	n:2930000
U2AF1   2930000 perm   3725 sec   (787 perm/sec)   p_kst 2.235495e-04   p_cons 1.033788e-03   p_joint 6.928328e-05

Joint ci ratio: 2.737751e-01	ci left: 6.019243e-05	ci right 7.959049e-05	k: 204	n:2940000
Cons ci ratio: 7.107160e-02	ci left: 9.969298e-04	ci right 1.070725e-03	k: 3038	n:2940000
KS ci ratio: 1.529167e-01	ci left: 2.063807e-04	ci right 2.408748e-04	k: 656	n:2940000
U2AF1   2940000 perm   3749 sec   (784 perm/sec)   p_kst 2.231293e-04   p_cons 1.033333e-03   p_joint 6.938776e-05

Joint ci ratio: 2.731098e-01	ci left: 6.030413e-05	ci right 7.968286e-05	k: 205	n:2950000
Cons ci ratio: 7.093167e-02	ci left: 9.975460e-04	ci right 1.071236e-03	k: 3050	n:2950000
KS ci ratio: 1.524532e-01	ci left: 2.069852e-04	ci right 2.414660e-04	k: 660	n:2950000
U2AF1   2950000 perm   3773 sec   (782 perm/sec)   p_kst 2.237288e-04   p_cons 1.033898e-03   p_joint 6.949153e-05

Joint ci ratio: 2.089242e-01	ci left: 1.064993e-04	ci right 1.316579e-04	k: 351	n:2960000
Cons ci ratio: 7.079257e-02	ci left: 9.981582e-04	ci right 1.071743e-03	k: 3062	n:2960000
KS ci ratio: 1.521084e-01	ci left: 2.072608e-04	ci right 2.417023e-04	k: 663	n:2960000
U2AF1   2960000 perm   3797 sec   (780 perm/sec)   p_kst 2.239865e-04   p_cons 1.034459e-03   p_joint 1.185811e-04

Joint ci ratio: 2.089243e-01	ci left: 1.061408e-04	ci right 1.312146e-04	k: 351	n:2970000
Cons ci ratio: 7.070033e-02	ci left: 9.974433e-04	ci right 1.070875e-03	k: 3070	n:2970000
KS ci ratio: 1.521085e-01	ci left: 2.065630e-04	ci right 2.408885e-04	k: 663	n:2970000
U2AF1   2970000 perm   3821 sec   (777 perm/sec)   p_kst 2.232323e-04   p_cons 1.033670e-03   p_joint 1.181818e-04

Joint ci ratio: 2.086282e-01	ci left: 1.061026e-04	ci right 1.311274e-04	k: 352	n:2980000
Cons ci ratio: 7.055113e-02	ci left: 9.983816e-04	ci right 1.071721e-03	k: 3083	n:2980000
KS ci ratio: 1.518799e-01	ci left: 2.065154e-04	ci right 2.407768e-04	k: 665	n:2980000
U2AF1   2980000 perm   3845 sec   (775 perm/sec)   p_kst 2.231544e-04   p_cons 1.034564e-03   p_joint 1.181208e-04

Joint ci ratio: 2.080396e-01	ci left: 1.063818e-04	ci right 1.313926e-04	k: 354	n:2990000
Cons ci ratio: 7.043703e-02	ci left: 9.983280e-04	ci right 1.071540e-03	k: 3093	n:2990000
KS ci ratio: 1.515390e-01	ci left: 2.067900e-04	ci right 2.410129e-04	k: 668	n:2990000
U2AF1   2990000 perm   3870 sec   (773 perm/sec)   p_kst 2.234114e-04   p_cons 1.034448e-03   p_joint 1.183946e-04

Joint ci ratio: 2.077472e-01	ci left: 1.063431e-04	ci right 1.313053e-04	k: 355	n:3000000
Cons ci ratio: 7.035752e-02	ci left: 9.972925e-04	ci right 1.070343e-03	k: 3100	n:3000000
KS ci ratio: 1.514259e-01	ci left: 2.064214e-04	ci right 2.405555e-04	k: 669	n:3000000
U2AF1   3000000 perm   3895 sec   (770 perm/sec)   p_kst 2.230000e-04   p_cons 1.033333e-03   p_joint 1.183333e-04

Joint ci ratio: 2.071661e-01	ci left: 1.066198e-04	ci right 1.315680e-04	k: 357	n:3010000
Cons ci ratio: 7.024436e-02	ci left: 9.972431e-04	ci right 1.070167e-03	k: 3110	n:3010000
KS ci ratio: 1.512004e-01	ci left: 2.063749e-04	ci right 2.404459e-04	k: 671	n:3010000
U2AF1   3010000 perm   3919 sec   (768 perm/sec)   p_kst 2.229236e-04   p_cons 1.033223e-03   p_joint 1.186047e-04

Joint ci ratio: 2.071661e-01	ci left: 1.062667e-04	ci right 1.311323e-04	k: 357	n:3020000
Cons ci ratio: 7.018804e-02	ci left: 9.955675e-04	ci right 1.068309e-03	k: 3115	n:3020000
KS ci ratio: 1.510880e-01	ci left: 2.060101e-04	ci right 2.399934e-04	k: 672	n:3020000
U2AF1   3020000 perm   3945 sec   (766 perm/sec)   p_kst 2.225166e-04   p_cons 1.031457e-03   p_joint 1.182119e-04

Joint ci ratio: 2.154509e-01	ci left: 9.747641e-05	ci right 1.213180e-04	k: 330	n:3030000
Cons ci ratio: 7.013186e-02	ci left: 9.939030e-04	ci right 1.066462e-03	k: 3120	n:3030000
KS ci ratio: 1.504189e-01	ci left: 2.072358e-04	ci right 2.412561e-04	k: 678	n:3030000
U2AF1   3030000 perm   3974 sec   (762 perm/sec)   p_kst 2.237624e-04   p_cons 1.029703e-03   p_joint 1.089109e-04

Joint ci ratio: 2.151262e-01	ci left: 9.746698e-05	ci right 1.212656e-04	k: 331	n:3040000
Cons ci ratio: 6.998622e-02	ci left: 9.948350e-04	ci right 1.067305e-03	k: 3133	n:3040000
KS ci ratio: 1.504190e-01	ci left: 2.065541e-04	ci right 2.404625e-04	k: 678	n:3040000
U2AF1   3040000 perm   3999 sec   (760 perm/sec)   p_kst 2.230263e-04   p_cons 1.030592e-03   p_joint 1.088816e-04

Joint ci ratio: 2.148029e-01	ci left: 9.745763e-05	ci right 1.212135e-04	k: 332	n:3050000
Cons ci ratio: 6.984148e-02	ci left: 9.957610e-04	ci right 1.068142e-03	k: 3146	n:3050000
KS ci ratio: 1.503084e-01	ci left: 2.061924e-04	ci right 2.400143e-04	k: 679	n:3050000
U2AF1   3050000 perm   4024 sec   (758 perm/sec)   p_kst 2.226230e-04   p_cons 1.031475e-03   p_joint 1.088525e-04

Joint ci ratio: 2.148030e-01	ci left: 9.713914e-05	ci right 1.208174e-04	k: 332	n:3060000
Cons ci ratio: 6.976398e-02	ci left: 9.947545e-04	ci right 1.066979e-03	k: 3153	n:3060000
KS ci ratio: 1.501980e-01	ci left: 2.058330e-04	ci right 2.395690e-04	k: 680	n:3060000
U2AF1   3060000 perm   4049 sec   (756 perm/sec)   p_kst 2.222222e-04   p_cons 1.030392e-03   p_joint 1.084967e-04

Joint ci ratio: 2.144812e-01	ci left: 9.713095e-05	ci right 1.207671e-04	k: 333	n:3070000
Cons ci ratio: 6.965364e-02	ci left: 9.947149e-04	ci right 1.066818e-03	k: 3163	n:3070000
KS ci ratio: 1.500879e-01	ci left: 2.054761e-04	ci right 2.391267e-04	k: 681	n:3070000
U2AF1   3070000 perm   4074 sec   (754 perm/sec)   p_kst 2.218241e-04   p_cons 1.030293e-03   p_joint 1.084691e-04

Joint ci ratio: 2.141608e-01	ci left: 9.712284e-05	ci right 1.207170e-04	k: 334	n:3080000
Cons ci ratio: 6.958774e-02	ci left: 9.933994e-04	ci right 1.065336e-03	k: 3169	n:3080000
KS ci ratio: 1.498683e-01	ci left: 2.054339e-04	ci right 2.390240e-04	k: 683	n:3080000
U2AF1   3080000 perm   4099 sec   (751 perm/sec)   p_kst 2.217532e-04   p_cons 1.028896e-03   p_joint 1.084416e-04

Joint ci ratio: 2.138419e-01	ci left: 9.711481e-05	ci right 1.206673e-04	k: 335	n:3090000
Cons ci ratio: 6.947825e-02	ci left: 9.933645e-04	ci right 1.065181e-03	k: 3179	n:3090000
KS ci ratio: 1.495407e-01	ci left: 2.057036e-04	ci right 2.392576e-04	k: 686	n:3090000
U2AF1   3090000 perm   4124 sec   (749 perm/sec)   p_kst 2.220065e-04   p_cons 1.028803e-03   p_joint 1.084142e-04

Joint ci ratio: 2.132082e-01	ci left: 9.741220e-05	ci right 1.209577e-04	k: 337	n:3100000
Cons ci ratio: 6.940194e-02	ci left: 9.923789e-04	ci right 1.064042e-03	k: 3186	n:3100000
KS ci ratio: 1.492152e-01	ci left: 2.059716e-04	ci right 2.394897e-04	k: 689	n:3100000
U2AF1   3100000 perm   4149 sec   (747 perm/sec)   p_kst 2.222581e-04   p_cons 1.027742e-03   p_joint 1.087097e-04

Joint ci ratio: 2.122682e-01	ci left: 9.801222e-05	ci right 1.215847e-04	k: 340	n:3110000
Cons ci ratio: 6.927163e-02	ci left: 9.929796e-04	ci right 1.064546e-03	k: 3198	n:3110000
KS ci ratio: 1.487845e-01	ci left: 2.065475e-04	ci right 2.400537e-04	k: 693	n:3110000
U2AF1   3110000 perm   4174 sec   (745 perm/sec)   p_kst 2.228296e-04   p_cons 1.028296e-03   p_joint 1.093248e-04

Joint ci ratio: 2.116484e-01	ci left: 9.830508e-05	ci right 1.218700e-04	k: 342	n:3120000
Cons ci ratio: 6.912050e-02	ci left: 9.942065e-04	ci right 1.065699e-03	k: 3212	n:3120000
KS ci ratio: 1.484640e-01	ci left: 2.068113e-04	ci right 2.402816e-04	k: 696	n:3120000
U2AF1   3120000 perm   4200 sec   (743 perm/sec)   p_kst 2.230769e-04   p_cons 1.029487e-03   p_joint 1.096154e-04

Joint ci ratio: 2.113406e-01	ci left: 9.829357e-05	ci right 1.218170e-04	k: 343	n:3130000
Cons ci ratio: 6.901319e-02	ci left: 9.941699e-04	ci right 1.065544e-03	k: 3222	n:3130000
KS ci ratio: 1.483576e-01	ci left: 2.064582e-04	ci right 2.398453e-04	k: 697	n:3130000
U2AF1   3130000 perm   4225 sec   (741 perm/sec)   p_kst 2.226837e-04   p_cons 1.029393e-03   p_joint 1.095847e-04

Joint ci ratio: 2.104250e-01	ci left: 9.888550e-05	ci right 1.224349e-04	k: 346	n:3140000
Cons ci ratio: 6.891705e-02	ci left: 9.938205e-04	ci right 1.065067e-03	k: 3231	n:3140000
KS ci ratio: 1.481455e-01	ci left: 2.064140e-04	ci right 2.397420e-04	k: 699	n:3140000
U2AF1   3140000 perm   4251 sec   (739 perm/sec)   p_kst 2.226115e-04   p_cons 1.028981e-03   p_joint 1.101911e-04

Joint ci ratio: 2.101224e-01	ci left: 9.887232e-05	ci right 1.223803e-04	k: 347	n:3150000
Cons ci ratio: 6.887451e-02	ci left: 9.919135e-04	ci right 1.062977e-03	k: 3235	n:3150000
KS ci ratio: 1.479344e-01	ci left: 2.063701e-04	ci right 2.396393e-04	k: 701	n:3150000
U2AF1   3150000 perm   4277 sec   (737 perm/sec)   p_kst 2.225397e-04   p_cons 1.026984e-03   p_joint 1.101587e-04

Joint ci ratio: 2.089250e-01	ci left: 9.975885e-05	ci right 1.233252e-04	k: 351	n:3160000
Cons ci ratio: 6.880018e-02	ci left: 9.909516e-04	ci right 1.061867e-03	k: 3242	n:3160000
KS ci ratio: 1.473061e-01	ci left: 2.075457e-04	ci right 2.408498e-04	k: 707	n:3160000
U2AF1   3160000 perm   4303 sec   (734 perm/sec)   p_kst 2.237342e-04   p_cons 1.025949e-03   p_joint 1.110759e-04

Joint ci ratio: 2.101225e-01	ci left: 9.824852e-05	ci right 1.216082e-04	k: 347	n:3170000
Cons ci ratio: 6.871550e-02	ci left: 9.903058e-04	ci right 1.061084e-03	k: 3250	n:3170000
KS ci ratio: 1.472022e-01	ci left: 2.071948e-04	ci right 2.404171e-04	k: 708	n:3170000
U2AF1   3170000 perm   4328 sec   (732 perm/sec)   p_kst 2.233438e-04   p_cons 1.025237e-03   p_joint 1.094637e-04

Joint ci ratio: 2.095212e-01	ci left: 9.853545e-05	ci right 1.218877e-04	k: 349	n:3180000
Cons ci ratio: 6.864167e-02	ci left: 9.893551e-04	ci right 1.059986e-03	k: 3257	n:3180000
KS ci ratio: 1.466858e-01	ci left: 2.080578e-04	ci right 2.412911e-04	k: 713	n:3180000
U2AF1   3180000 perm   4354 sec   (730 perm/sec)   p_kst 2.242138e-04   p_cons 1.024214e-03   p_joint 1.097484e-04

Joint ci ratio: 2.092226e-01	ci left: 9.852360e-05	ci right 1.218355e-04	k: 350	n:3190000
Cons ci ratio: 6.854708e-02	ci left: 9.890266e-04	ci right 1.059533e-03	k: 3266	n:3190000
KS ci ratio: 1.464808e-01	ci left: 2.080095e-04	ci right 2.411847e-04	k: 715	n:3190000
U2AF1   3190000 perm   4381 sec   (728 perm/sec)   p_kst 2.241379e-04   p_cons 1.023824e-03   p_joint 1.097179e-04

Joint ci ratio: 2.089252e-01	ci left: 9.851185e-05	ci right 1.217836e-04	k: 351	n:3200000
Cons ci ratio: 6.842151e-02	ci left: 9.896217e-04	ci right 1.060036e-03	k: 3278	n:3200000
KS ci ratio: 1.462767e-01	ci left: 2.079616e-04	ci right 2.410789e-04	k: 717	n:3200000
U2AF1   3200000 perm   4407 sec   (726 perm/sec)   p_kst 2.240625e-04   p_cons 1.024375e-03   p_joint 1.096875e-04

Joint ci ratio: 2.110343e-01	ci left: 9.613893e-05	ci right 1.191091e-04	k: 344	n:3210000
Cons ci ratio: 6.826550e-02	ci left: 9.911318e-04	ci right 1.061487e-03	k: 3293	n:3210000
KS ci ratio: 1.460734e-01	ci left: 2.079140e-04	ci right 2.409737e-04	k: 719	n:3210000
U2AF1   3210000 perm   4433 sec   (724 perm/sec)   p_kst 2.239875e-04   p_cons 1.025857e-03   p_joint 1.071651e-04

Joint ci ratio: 2.107292e-01	ci left: 9.613452e-05	ci right 1.190661e-04	k: 345	n:3220000
Cons ci ratio: 6.814147e-02	ci left: 9.917169e-04	ci right 1.061980e-03	k: 3305	n:3220000
KS ci ratio: 1.457700e-01	ci left: 2.081660e-04	ci right 2.411910e-04	k: 722	n:3220000
U2AF1   3220000 perm   4459 sec   (722 perm/sec)   p_kst 2.242236e-04   p_cons 1.026398e-03   p_joint 1.071429e-04

Joint ci ratio: 2.104253e-01	ci left: 9.613016e-05	ci right 1.190234e-04	k: 346	n:3230000
Cons ci ratio: 6.802838e-02	ci left: 9.919942e-04	ci right 1.062156e-03	k: 3316	n:3230000
KS ci ratio: 1.455688e-01	ci left: 2.081181e-04	ci right 2.410860e-04	k: 724	n:3230000
U2AF1   3230000 perm   4485 sec   (720 perm/sec)   p_kst 2.241486e-04   p_cons 1.026625e-03   p_joint 1.071207e-04

Joint ci ratio: 2.098215e-01	ci left: 9.641827e-05	ci right 1.193057e-04	k: 348	n:3240000
Cons ci ratio: 6.796699e-02	ci left: 9.907528e-04	ci right 1.060761e-03	k: 3322	n:3240000
KS ci ratio: 1.453684e-01	ci left: 2.080706e-04	ci right 2.409816e-04	k: 726	n:3240000
U2AF1   3240000 perm   4512 sec   (718 perm/sec)   p_kst 2.240741e-04   p_cons 1.025309e-03   p_joint 1.074074e-04

Joint ci ratio: 2.098215e-01	ci left: 9.612159e-05	ci right 1.189387e-04	k: 348	n:3250000
Cons ci ratio: 6.791596e-02	ci left: 9.892166e-04	ci right 1.059062e-03	k: 3327	n:3250000
KS ci ratio: 1.452686e-01	ci left: 2.077269e-04	ci right 2.405590e-04	k: 727	n:3250000
U2AF1   3250000 perm   4538 sec   (716 perm/sec)   p_kst 2.236923e-04   p_cons 1.023692e-03   p_joint 1.070769e-04

Joint ci ratio: 2.098215e-01	ci left: 9.582674e-05	ci right 1.185738e-04	k: 348	n:3260000
Cons ci ratio: 6.785487e-02	ci left: 9.879915e-04	ci right 1.057685e-03	k: 3333	n:3260000
KS ci ratio: 1.452686e-01	ci left: 2.070897e-04	ci right 2.398211e-04	k: 727	n:3260000
U2AF1   3260000 perm   4565 sec   (714 perm/sec)   p_kst 2.230061e-04   p_cons 1.022393e-03   p_joint 1.067485e-04

Joint ci ratio: 2.098216e-01	ci left: 9.553369e-05	ci right 1.182112e-04	k: 348	n:3270000
Cons ci ratio: 6.771281e-02	ci left: 9.891789e-04	ci right 1.058804e-03	k: 3347	n:3270000
KS ci ratio: 1.452687e-01	ci left: 2.064564e-04	ci right 2.390877e-04	k: 727	n:3270000
U2AF1   3270000 perm   4591 sec   (712 perm/sec)   p_kst 2.223242e-04   p_cons 1.023547e-03   p_joint 1.064220e-04

Joint ci ratio: 2.098216e-01	ci left: 9.524243e-05	ci right 1.178508e-04	k: 348	n:3280000
Cons ci ratio: 6.759177e-02	ci left: 9.897597e-04	ci right 1.059297e-03	k: 3359	n:3280000
KS ci ratio: 1.451690e-01	ci left: 2.061207e-04	ci right 2.386747e-04	k: 728	n:3280000
U2AF1   3280000 perm   4618 sec   (710 perm/sec)   p_kst 2.219512e-04   p_cons 1.024085e-03   p_joint 1.060976e-04

Joint ci ratio: 2.098216e-01	ci left: 9.495294e-05	ci right 1.174926e-04	k: 348	n:3290000
Cons ci ratio: 6.752150e-02	ci left: 9.888431e-04	ci right 1.058241e-03	k: 3366	n:3290000
KS ci ratio: 1.449703e-01	ci left: 2.060801e-04	ci right 2.385792e-04	k: 730	n:3290000
U2AF1   3290000 perm   4644 sec   (708 perm/sec)   p_kst 2.218845e-04   p_cons 1.023100e-03   p_joint 1.057751e-04

Joint ci ratio: 2.092230e-01	ci left: 9.523946e-05	ci right 1.177744e-04	k: 350	n:3300000
Cons ci ratio: 6.741147e-02	ci left: 9.891237e-04	ci right 1.058423e-03	k: 3377	n:3300000
KS ci ratio: 1.445753e-01	ci left: 2.066238e-04	ci right 2.391123e-04	k: 734	n:3300000
U2AF1   3300000 perm   4670 sec   (707 perm/sec)   p_kst 2.224242e-04   p_cons 1.023333e-03   p_joint 1.060606e-04

Joint ci ratio: 2.089256e-01	ci left: 9.523803e-05	ci right 1.177365e-04	k: 351	n:3310000
Cons ci ratio: 6.731191e-02	ci left: 9.891056e-04	ci right 1.058298e-03	k: 3387	n:3310000
KS ci ratio: 1.444770e-01	ci left: 2.062907e-04	ci right 2.387029e-04	k: 735	n:3310000
U2AF1   3310000 perm   4698 sec   (705 perm/sec)   p_kst 2.220544e-04   p_cons 1.023263e-03   p_joint 1.060423e-04

Joint ci ratio: 2.086294e-01	ci left: 9.523662e-05	ci right 1.176988e-04	k: 352	n:3320000
Cons ci ratio: 6.722270e-02	ci left: 9.887917e-04	ci right 1.057867e-03	k: 3396	n:3320000
KS ci ratio: 1.443790e-01	ci left: 2.059597e-04	ci right 2.382960e-04	k: 736	n:3320000
U2AF1   3320000 perm   4725 sec   (703 perm/sec)   p_kst 2.216867e-04   p_cons 1.022892e-03   p_joint 1.060241e-04

Joint ci ratio: 2.074572e-01	ci left: 9.608926e-05	ci right 1.186090e-04	k: 356	n:3330000
Cons ci ratio: 6.716345e-02	ci left: 9.875938e-04	ci right 1.056522e-03	k: 3402	n:3330000
KS ci ratio: 1.438917e-01	ci left: 2.067886e-04	ci right 2.391360e-04	k: 741	n:3330000
U2AF1   3330000 perm   4752 sec   (701 perm/sec)   p_kst 2.225225e-04   p_cons 1.021622e-03   p_joint 1.069069e-04

Joint ci ratio: 2.068785e-01	ci left: 9.636931e-05	ci right 1.188837e-04	k: 358	n:3340000
Cons ci ratio: 6.706499e-02	ci left: 9.875807e-04	ci right 1.056403e-03	k: 3412	n:3340000
KS ci ratio: 1.436981e-01	ci left: 2.067467e-04	ci right 2.390404e-04	k: 743	n:3340000
U2AF1   3340000 perm   4779 sec   (699 perm/sec)   p_kst 2.224551e-04   p_cons 1.021557e-03   p_joint 1.071856e-04

Joint ci ratio: 2.065910e-01	ci left: 9.636469e-05	ci right 1.188428e-04	k: 359	n:3350000
Cons ci ratio: 6.696696e-02	ci left: 9.875678e-04	ci right 1.056284e-03	k: 3422	n:3350000
KS ci ratio: 1.435054e-01	ci left: 2.067051e-04	ci right 2.389453e-04	k: 745	n:3350000
U2AF1   3350000 perm   4805 sec   (697 perm/sec)   p_kst 2.223881e-04   p_cons 1.021493e-03   p_joint 1.071642e-04

Joint ci ratio: 2.065910e-01	ci left: 9.607789e-05	ci right 1.184891e-04	k: 359	n:3360000
Cons ci ratio: 6.683039e-02	ci left: 9.887256e-04	ci right 1.057377e-03	k: 3436	n:3360000
KS ci ratio: 1.435054e-01	ci left: 2.060899e-04	ci right 2.382341e-04	k: 745	n:3360000
U2AF1   3360000 perm   4832 sec   (695 perm/sec)   p_kst 2.217262e-04   p_cons 1.022619e-03   p_joint 1.068452e-04

Joint ci ratio: 2.065911e-01	ci left: 9.579279e-05	ci right 1.181375e-04	k: 359	n:3370000
Cons ci ratio: 6.676247e-02	ci left: 9.878341e-04	ci right 1.056351e-03	k: 3443	n:3370000
KS ci ratio: 1.433135e-01	ci left: 2.060505e-04	ci right 2.381419e-04	k: 747	n:3370000
U2AF1   3370000 perm   4858 sec   (694 perm/sec)   p_kst 2.216617e-04   p_cons 1.021662e-03   p_joint 1.065282e-04

Joint ci ratio: 2.095219e-01	ci left: 9.270492e-05	ci right 1.146755e-04	k: 349	n:3380000
Cons ci ratio: 6.666576e-02	ci left: 9.878207e-04	ci right 1.056234e-03	k: 3453	n:3380000
KS ci ratio: 1.433135e-01	ci left: 2.054409e-04	ci right 2.374374e-04	k: 747	n:3380000
U2AF1   3380000 perm   4885 sec   (692 perm/sec)   p_kst 2.210059e-04   p_cons 1.021598e-03   p_joint 1.032544e-04

Joint ci ratio: 2.095220e-01	ci left: 9.243145e-05	ci right 1.143372e-04	k: 349	n:3390000
Cons ci ratio: 6.655024e-02	ci left: 9.883877e-04	ci right 1.056717e-03	k: 3465	n:3390000
KS ci ratio: 1.431223e-01	ci left: 2.054037e-04	ci right 2.373481e-04	k: 749	n:3390000
U2AF1   3390000 perm   4912 sec   (690 perm/sec)   p_kst 2.209440e-04   p_cons 1.022124e-03   p_joint 1.029499e-04

Joint ci ratio: 2.089259e-01	ci left: 9.271701e-05	ci right 1.146199e-04	k: 351	n:3400000
Cons ci ratio: 6.645444e-02	ci left: 9.883729e-04	ci right 1.056599e-03	k: 3475	n:3400000
KS ci ratio: 1.429319e-01	ci left: 2.053668e-04	ci right 2.372593e-04	k: 751	n:3400000
U2AF1   3400000 perm   4940 sec   (688 perm/sec)   p_kst 2.208824e-04   p_cons 1.022059e-03   p_joint 1.032353e-04

Joint ci ratio: 2.089259e-01	ci left: 9.244511e-05	ci right 1.142838e-04	k: 351	n:3410000
Cons ci ratio: 6.633049e-02	ci left: 9.892235e-04	ci right 1.057376e-03	k: 3488	n:3410000
KS ci ratio: 1.427422e-01	ci left: 2.053301e-04	ci right 2.371710e-04	k: 753	n:3410000
U2AF1   3410000 perm   4968 sec   (686 perm/sec)   p_kst 2.208211e-04   p_cons 1.022874e-03   p_joint 1.029326e-04

Joint ci ratio: 2.089259e-01	ci left: 9.217480e-05	ci right 1.139496e-04	k: 351	n:3420000
Cons ci ratio: 6.623564e-02	ci left: 9.892066e-04	ci right 1.057257e-03	k: 3498	n:3420000
KS ci ratio: 1.427422e-01	ci left: 2.047297e-04	ci right 2.364775e-04	k: 753	n:3420000
U2AF1   3420000 perm   4995 sec   (685 perm/sec)   p_kst 2.201754e-04   p_cons 1.022807e-03   p_joint 1.026316e-04

Joint ci ratio: 2.086298e-01	ci left: 9.218237e-05	ci right 1.139242e-04	k: 352	n:3430000
Cons ci ratio: 6.616007e-02	ci left: 9.886163e-04	ci right 1.056545e-03	k: 3506	n:3430000
KS ci ratio: 1.424591e-01	ci left: 2.049763e-04	ci right 2.366939e-04	k: 756	n:3430000
U2AF1   3430000 perm   5022 sec   (683 perm/sec)   p_kst 2.204082e-04   p_cons 1.022157e-03   p_joint 1.026239e-04

Joint ci ratio: 2.083349e-01	ci left: 9.218992e-05	ci right 1.138989e-04	k: 353	n:3440000
Cons ci ratio: 6.607536e-02	ci left: 9.883155e-04	ci right 1.056134e-03	k: 3515	n:3440000
KS ci ratio: 1.423651e-01	ci left: 2.046607e-04	ci right 2.363068e-04	k: 757	n:3440000
U2AF1   3440000 perm   5050 sec   (681 perm/sec)   p_kst 2.200581e-04   p_cons 1.021802e-03   p_joint 1.026163e-04

Joint ci ratio: 2.101234e-01	ci left: 9.027468e-05	ci right 1.117386e-04	k: 347	n:3450000
Cons ci ratio: 6.599096e-02	ci left: 9.880164e-04	ci right 1.055724e-03	k: 3524	n:3450000
KS ci ratio: 1.422713e-01	ci left: 2.043470e-04	ci right 2.359221e-04	k: 758	n:3450000
U2AF1   3450000 perm   5077 sec   (679 perm/sec)   p_kst 2.197101e-04   p_cons 1.021449e-03   p_joint 1.005797e-04

Joint ci ratio: 2.098222e-01	ci left: 9.028759e-05	ci right 1.117199e-04	k: 348	n:3460000
Cons ci ratio: 6.586027e-02	ci left: 9.891404e-04	ci right 1.056786e-03	k: 3538	n:3460000
KS ci ratio: 1.420842e-01	ci left: 2.043139e-04	ci right 2.358388e-04	k: 760	n:3460000
U2AF1   3460000 perm   5105 sec   (678 perm/sec)   p_kst 2.196532e-04   p_cons 1.022543e-03   p_joint 1.005780e-04

Joint ci ratio: 2.095222e-01	ci left: 9.030045e-05	ci right 1.117012e-04	k: 349	n:3470000
Cons ci ratio: 6.578598e-02	ci left: 9.885574e-04	ci right 1.056084e-03	k: 3546	n:3470000
KS ci ratio: 1.417123e-01	ci left: 2.048369e-04	ci right 2.363528e-04	k: 764	n:3470000
U2AF1   3470000 perm   5132 sec   (676 perm/sec)   p_kst 2.201729e-04   p_cons 1.021902e-03   p_joint 1.005764e-04

Joint ci ratio: 2.089261e-01	ci left: 9.058557e-05	ci right 1.119850e-04	k: 351	n:3480000
Cons ci ratio: 6.567496e-02	ci left: 9.891083e-04	ci right 1.056554e-03	k: 3558	n:3480000
KS ci ratio: 1.415274e-01	ci left: 2.048027e-04	ci right 2.362687e-04	k: 766	n:3480000
U2AF1   3480000 perm   5160 sec   (674 perm/sec)   p_kst 2.201149e-04   p_cons 1.022414e-03   p_joint 1.008621e-04

Joint ci ratio: 2.083351e-01	ci left: 9.086914e-05	ci right 1.122671e-04	k: 353	n:3490000
Cons ci ratio: 6.554613e-02	ci left: 9.902199e-04	ci right 1.057604e-03	k: 3572	n:3490000
KS ci ratio: 1.412514e-01	ci left: 2.050450e-04	ci right 2.364817e-04	k: 769	n:3490000
U2AF1   3490000 perm   5188 sec   (673 perm/sec)   p_kst 2.203438e-04   p_cons 1.023496e-03   p_joint 1.011461e-04

Joint ci ratio: 2.080414e-01	ci left: 9.088034e-05	ci right 1.122469e-04	k: 354	n:3500000
Cons ci ratio: 6.543632e-02	ci left: 9.907631e-04	ci right 1.058067e-03	k: 3584	n:3500000
KS ci ratio: 1.409770e-01	ci left: 2.052861e-04	ci right 2.366934e-04	k: 772	n:3500000
U2AF1   3500000 perm   5215 sec   (671 perm/sec)   p_kst 2.205714e-04   p_cons 1.024000e-03   p_joint 1.011429e-04

Joint ci ratio: 2.080414e-01	ci left: 9.062142e-05	ci right 1.119271e-04	k: 354	n:3510000
Cons ci ratio: 6.530889e-02	ci left: 9.918639e-04	ci right 1.059106e-03	k: 3598	n:3510000
KS ci ratio: 1.407950e-01	ci left: 2.052509e-04	ci right 2.366089e-04	k: 774	n:3510000
U2AF1   3510000 perm   5244 sec   (669 perm/sec)   p_kst 2.205128e-04   p_cons 1.025071e-03   p_joint 1.008547e-04

Joint ci ratio: 2.080415e-01	ci left: 9.036397e-05	ci right 1.116092e-04	k: 354	n:3520000
Cons ci ratio: 6.526362e-02	ci left: 9.904433e-04	ci right 1.057541e-03	k: 3603	n:3520000
KS ci ratio: 1.406137e-01	ci left: 2.052160e-04	ci right 2.365249e-04	k: 776	n:3520000
U2AF1   3520000 perm   5272 sec   (668 perm/sec)   p_kst 2.204545e-04   p_cons 1.023580e-03   p_joint 1.005682e-04

Joint ci ratio: 2.074579e-01	ci left: 9.064508e-05	ci right 1.118890e-04	k: 356	n:3530000
Cons ci ratio: 6.511018e-02	ci left: 9.923749e-04	ci right 1.059439e-03	k: 3620	n:3530000
KS ci ratio: 1.403430e-01	ci left: 2.054547e-04	ci right 2.367346e-04	k: 779	n:3530000
U2AF1   3530000 perm   5300 sec   (666 perm/sec)   p_kst 2.206799e-04   p_cons 1.025496e-03   p_joint 1.008499e-04

Joint ci ratio: 2.074579e-01	ci left: 9.038902e-05	ci right 1.115729e-04	k: 356	n:3540000
Cons ci ratio: 6.499359e-02	ci left: 9.931842e-04	ci right 1.060179e-03	k: 3633	n:3540000
KS ci ratio: 1.402531e-01	ci left: 2.051468e-04	ci right 2.363582e-04	k: 780	n:3540000
U2AF1   3540000 perm   5328 sec   (664 perm/sec)   p_kst 2.203390e-04   p_cons 1.026271e-03   p_joint 1.005650e-04

Joint ci ratio: 2.074579e-01	ci left: 9.013440e-05	ci right 1.112586e-04	k: 356	n:3550000
Cons ci ratio: 6.494897e-02	ci left: 9.917721e-04	ci right 1.058624e-03	k: 3638	n:3550000
KS ci ratio: 1.401635e-01	ci left: 2.048408e-04	ci right 2.359840e-04	k: 781	n:3550000
U2AF1   3550000 perm   5356 sec   (663 perm/sec)   p_kst 2.200000e-04   p_cons 1.024789e-03   p_joint 1.002817e-04

Joint ci ratio: 2.065917e-01	ci left: 9.068023e-05	ci right 1.118324e-04	k: 359	n:3560000
Cons ci ratio: 6.488662e-02	ci left: 9.909205e-04	ci right 1.057648e-03	k: 3645	n:3560000
KS ci ratio: 1.397174e-01	ci left: 2.056207e-04	ci right 2.367747e-04	k: 786	n:3560000
U2AF1   3560000 perm   5385 sec   (661 perm/sec)   p_kst 2.207865e-04   p_cons 1.023876e-03   p_joint 1.008427e-04

Joint ci ratio: 2.535552e-01	ci left: 5.846554e-05	ci right 7.569603e-05	k: 238	n:3570000
Cons ci ratio: 6.482445e-02	ci left: 9.900738e-04	ci right 1.056678e-03	k: 3652	n:3570000
KS ci ratio: 1.363784e-01	ci left: 2.155919e-04	ci right 2.474128e-04	k: 825	n:3570000
U2AF1   3570000 perm   5413 sec   (659 perm/sec)   p_kst 2.310924e-04   p_cons 1.022969e-03   p_joint 6.666667e-05

Joint ci ratio: 2.535552e-01	ci left: 5.830223e-05	ci right 7.548459e-05	k: 238	n:3580000
Cons ci ratio: 6.472707e-02	ci left: 9.903311e-04	ci right 1.056849e-03	k: 3663	n:3580000
KS ci ratio: 1.362136e-01	ci left: 2.155293e-04	ci right 2.472994e-04	k: 827	n:3580000
U2AF1   3580000 perm   5442 sec   (658 perm/sec)   p_kst 2.310056e-04   p_cons 1.023184e-03   p_joint 6.648045e-05

Joint ci ratio: 2.525009e-01	ci left: 5.866160e-05	ci right 7.586668e-05	k: 240	n:3590000
Cons ci ratio: 6.464773e-02	ci left: 9.900389e-04	ci right 1.056453e-03	k: 3672	n:3590000
KS ci ratio: 1.357227e-01	ci left: 2.165434e-04	ci right 2.483387e-04	k: 833	n:3590000
U2AF1   3590000 perm   5470 sec   (656 perm/sec)   p_kst 2.320334e-04   p_cons 1.022841e-03   p_joint 6.685237e-05

Joint ci ratio: 2.525009e-01	ci left: 5.849866e-05	ci right 7.565594e-05	k: 240	n:3600000
Cons ci ratio: 6.463021e-02	ci left: 9.878354e-04	ci right 1.054083e-03	k: 3674	n:3600000
KS ci ratio: 1.356414e-01	ci left: 2.162103e-04	ci right 2.479360e-04	k: 834	n:3600000
U2AF1   3600000 perm   5499 sec   (655 perm/sec)   p_kst 2.316667e-04   p_cons 1.020556e-03   p_joint 6.666667e-05

Joint ci ratio: 2.525009e-01	ci left: 5.833661e-05	ci right 7.544637e-05	k: 240	n:3610000
Cons ci ratio: 6.451617e-02	ci left: 9.886420e-04	ci right 1.054822e-03	k: 3687	n:3610000
KS ci ratio: 1.354793e-01	ci left: 2.161466e-04	ci right 2.478220e-04	k: 836	n:3610000
U2AF1   3610000 perm   5528 sec   (653 perm/sec)   p_kst 2.315789e-04   p_cons 1.021330e-03   p_joint 6.648199e-05

Joint ci ratio: 2.567994e-01	ci left: 5.610653e-05	ci right 7.288729e-05	k: 232	n:3620000
Cons ci ratio: 6.441145e-02	ci left: 9.891724e-04	ci right 1.055276e-03	k: 3699	n:3620000
KS ci ratio: 1.353177e-01	ci left: 2.160833e-04	ci right 2.477086e-04	k: 838	n:3620000
U2AF1   3620000 perm   5556 sec   (652 perm/sec)   p_kst 2.314917e-04   p_cons 1.021823e-03   p_joint 6.408840e-05

Joint ci ratio: 2.562501e-01	ci left: 5.620974e-05	ci right 7.297966e-05	k: 233	n:3630000
Cons ci ratio: 6.435933e-02	ci left: 9.880737e-04	ci right 1.054049e-03	k: 3705	n:3630000
KS ci ratio: 1.349963e-01	ci left: 2.165527e-04	ci right 2.481654e-04	k: 842	n:3630000
U2AF1   3630000 perm   5585 sec   (650 perm/sec)   p_kst 2.319559e-04   p_cons 1.020661e-03   p_joint 6.418733e-05

Joint ci ratio: 2.562501e-01	ci left: 5.605532e-05	ci right 7.277916e-05	k: 233	n:3640000
Cons ci ratio: 6.425537e-02	ci left: 9.886029e-04	ci right 1.054503e-03	k: 3717	n:3640000
KS ci ratio: 1.348364e-01	ci left: 2.164887e-04	ci right 2.480516e-04	k: 844	n:3640000
U2AF1   3640000 perm   5613 sec   (648 perm/sec)   p_kst 2.318681e-04   p_cons 1.021154e-03   p_joint 6.401099e-05

Joint ci ratio: 2.562502e-01	ci left: 5.590174e-05	ci right 7.257977e-05	k: 233	n:3650000
Cons ci ratio: 6.413470e-02	ci left: 9.896685e-04	ci right 1.055511e-03	k: 3731	n:3650000
KS ci ratio: 1.345977e-01	ci left: 2.166898e-04	ci right 2.482216e-04	k: 847	n:3650000
U2AF1   3650000 perm   5642 sec   (647 perm/sec)   p_kst 2.320548e-04   p_cons 1.022192e-03   p_joint 6.383562e-05

Joint ci ratio: 2.551620e-01	ci left: 5.626043e-05	ci right 7.296285e-05	k: 235	n:3660000
Cons ci ratio: 6.404038e-02	ci left: 9.899218e-04	ci right 1.055681e-03	k: 3742	n:3660000
KS ci ratio: 1.342026e-01	ci left: 2.174179e-04	ci right 2.489554e-04	k: 852	n:3660000
U2AF1   3660000 perm   5674 sec   (645 perm/sec)   p_kst 2.327869e-04   p_cons 1.022404e-03   p_joint 6.420765e-05

Joint ci ratio: 2.551620e-01	ci left: 5.610713e-05	ci right 7.276405e-05	k: 235	n:3670000
Cons ci ratio: 6.395501e-02	ci left: 9.899056e-04	ci right 1.055572e-03	k: 3752	n:3670000
KS ci ratio: 1.340455e-01	ci left: 2.173522e-04	ci right 2.488403e-04	k: 854	n:3670000
U2AF1   3670000 perm   5703 sec   (643 perm/sec)   p_kst 2.326975e-04   p_cons 1.022343e-03   p_joint 6.403270e-05

Joint ci ratio: 2.546231e-01	ci left: 5.620905e-05	ci right 7.285538e-05	k: 236	n:3680000
Cons ci ratio: 6.385299e-02	ci left: 9.904244e-04	ci right 1.056017e-03	k: 3764	n:3680000
KS ci ratio: 1.336553e-01	ci left: 2.180747e-04	ci right 2.495683e-04	k: 859	n:3680000
U2AF1   3680000 perm   5733 sec   (642 perm/sec)   p_kst 2.334239e-04   p_cons 1.022826e-03   p_joint 6.413043e-05

Joint ci ratio: 2.540876e-01	ci left: 5.631045e-05	ci right 7.294618e-05	k: 237	n:3690000
Cons ci ratio: 6.381068e-02	ci left: 9.890737e-04	ci right 1.054532e-03	k: 3769	n:3690000
KS ci ratio: 1.332684e-01	ci left: 2.187935e-04	ci right 2.502922e-04	k: 864	n:3690000
U2AF1   3690000 perm   5762 sec   (640 perm/sec)   p_kst 2.341463e-04   p_cons 1.021409e-03   p_joint 6.422764e-05

Joint ci ratio: 2.540877e-01	ci left: 5.615826e-05	ci right 7.274903e-05	k: 237	n:3700000
Cons ci ratio: 6.375155e-02	ci left: 9.882623e-04	ci right 1.053604e-03	k: 3776	n:3700000
KS ci ratio: 1.331146e-01	ci left: 2.187247e-04	ci right 2.501742e-04	k: 866	n:3700000
U2AF1   3700000 perm   5791 sec   (639 perm/sec)   p_kst 2.340541e-04   p_cons 1.020541e-03   p_joint 6.405405e-05

Joint ci ratio: 2.540877e-01	ci left: 5.600689e-05	ci right 7.255294e-05	k: 237	n:3710000
Cons ci ratio: 6.365050e-02	ci left: 9.887815e-04	ci right 1.054050e-03	k: 3788	n:3710000
KS ci ratio: 1.329613e-01	ci left: 2.186563e-04	ci right 2.500569e-04	k: 868	n:3710000
U2AF1   3710000 perm   5821 sec   (637 perm/sec)   p_kst 2.339623e-04   p_cons 1.021024e-03   p_joint 6.388140e-05

Joint ci ratio: 2.540877e-01	ci left: 5.585633e-05	ci right 7.235791e-05	k: 237	n:3720000
Cons ci ratio: 6.356667e-02	ci left: 9.887689e-04	ci right 1.053947e-03	k: 3798	n:3720000
KS ci ratio: 1.326563e-01	ci left: 2.191081e-04	ci right 2.504957e-04	k: 872	n:3720000
U2AF1   3720000 perm   5851 sec   (636 perm/sec)   p_kst 2.344086e-04   p_cons 1.020968e-03   p_joint 6.370968e-05

Joint ci ratio: 2.540877e-01	ci left: 5.570658e-05	ci right 7.216392e-05	k: 237	n:3730000
Cons ci ratio: 6.350822e-02	ci left: 9.879649e-04	ci right 1.053028e-03	k: 3805	n:3730000
KS ci ratio: 1.325046e-01	ci left: 2.190390e-04	ci right 2.503781e-04	k: 874	n:3730000
U2AF1   3730000 perm   5881 sec   (634 perm/sec)   p_kst 2.343164e-04   p_cons 1.020107e-03   p_joint 6.353887e-05

Joint ci ratio: 2.177683e-01	ci left: 7.720132e-05	ci right 9.631416e-05	k: 323	n:3740000
Cons ci ratio: 6.351666e-02	ci left: 9.850601e-04	ci right 1.049941e-03	k: 3804	n:3740000
KS ci ratio: 1.324290e-01	ci left: 2.187119e-04	ci right 2.499849e-04	k: 875	n:3740000
U2AF1   3740000 perm   5912 sec   (633 perm/sec)   p_kst 2.339572e-04   p_cons 1.017112e-03   p_joint 8.636364e-05

Joint ci ratio: 2.177683e-01	ci left: 7.699544e-05	ci right 9.605732e-05	k: 323	n:3750000
Cons ci ratio: 6.343336e-02	ci left: 9.850576e-04	ci right 1.049850e-03	k: 3814	n:3750000
KS ci ratio: 1.322781e-01	ci left: 2.186443e-04	ci right 2.498692e-04	k: 877	n:3750000
U2AF1   3750000 perm   5941 sec   (631 perm/sec)   p_kst 2.338667e-04   p_cons 1.017067e-03   p_joint 8.613333e-05

Joint ci ratio: 2.174331e-01	ci left: 7.704213e-05	ci right 9.608228e-05	k: 324	n:3760000
Cons ci ratio: 6.335868e-02	ci left: 9.847934e-04	ci right 1.049490e-03	k: 3823	n:3760000
KS ci ratio: 1.320527e-01	ci left: 2.188343e-04	ci right 2.500289e-04	k: 880	n:3760000
U2AF1   3760000 perm   5971 sec   (630 perm/sec)   p_kst 2.340426e-04   p_cons 1.016755e-03   p_joint 8.617021e-05

Joint ci ratio: 2.170993e-01	ci left: 7.708860e-05	ci right 9.610708e-05	k: 325	n:3770000
Cons ci ratio: 6.324298e-02	ci left: 9.858360e-04	ci right 1.050478e-03	k: 3837	n:3770000
KS ci ratio: 1.318284e-01	ci left: 2.190234e-04	ci right 2.501877e-04	k: 883	n:3770000
U2AF1   3770000 perm   6002 sec   (628 perm/sec)   p_kst 2.342175e-04   p_cons 1.017772e-03   p_joint 8.620690e-05

Joint ci ratio: 2.170993e-01	ci left: 7.688466e-05	ci right 9.585283e-05	k: 325	n:3780000
Cons ci ratio: 6.318542e-02	ci left: 9.850505e-04	ci right 1.049580e-03	k: 3844	n:3780000
KS ci ratio: 1.317539e-01	ci left: 2.186998e-04	ci right 2.497991e-04	k: 884	n:3780000
U2AF1   3780000 perm   6033 sec   (627 perm/sec)   p_kst 2.338624e-04   p_cons 1.016931e-03   p_joint 8.597884e-05

Joint ci ratio: 2.167671e-01	ci left: 7.693131e-05	ci right 9.587809e-05	k: 326	n:3790000
Cons ci ratio: 6.307066e-02	ci left: 9.860871e-04	ci right 1.050563e-03	k: 3858	n:3790000
KS ci ratio: 1.314571e-01	ci left: 2.191434e-04	ci right 2.502301e-04	k: 888	n:3790000
U2AF1   3790000 perm   6062 sec   (625 perm/sec)   p_kst 2.343008e-04   p_cons 1.017942e-03   p_joint 8.601583e-05

Joint ci ratio: 2.167671e-01	ci left: 7.672886e-05	ci right 9.562578e-05	k: 326	n:3800000
Cons ci ratio: 6.300541e-02	ci left: 9.855642e-04	ci right 1.049937e-03	k: 3866	n:3800000
KS ci ratio: 1.313095e-01	ci left: 2.190757e-04	ci right 2.501152e-04	k: 890	n:3800000
U2AF1   3800000 perm   6092 sec   (624 perm/sec)   p_kst 2.342105e-04   p_cons 1.017368e-03   p_joint 8.578947e-05

Joint ci ratio: 2.164364e-01	ci left: 7.677570e-05	ci right 9.565148e-05	k: 327	n:3810000
Cons ci ratio: 6.294849e-02	ci left: 9.847858e-04	ci right 1.049047e-03	k: 3873	n:3810000
KS ci ratio: 1.311624e-01	ci left: 2.190084e-04	ci right 2.500009e-04	k: 892	n:3810000
U2AF1   3810000 perm   6122 sec   (622 perm/sec)   p_kst 2.341207e-04   p_cons 1.016535e-03   p_joint 8.582677e-05

Joint ci ratio: 2.164365e-01	ci left: 7.657472e-05	ci right 9.540108e-05	k: 327	n:3820000
Cons ci ratio: 6.284311e-02	ci left: 9.855574e-04	ci right 1.049758e-03	k: 3886	n:3820000
KS ci ratio: 1.309426e-01	ci left: 2.191947e-04	ci right 2.501576e-04	k: 895	n:3820000
U2AF1   3820000 perm   6154 sec   (621 perm/sec)   p_kst 2.342932e-04   p_cons 1.017277e-03   p_joint 8.560209e-05

Joint ci ratio: 2.164365e-01	ci left: 7.637478e-05	ci right 9.515199e-05	k: 327	n:3830000
Cons ci ratio: 6.276243e-02	ci left: 9.855541e-04	ci right 1.049669e-03	k: 3896	n:3830000
KS ci ratio: 1.309427e-01	ci left: 2.186224e-04	ci right 2.495044e-04	k: 895	n:3830000
U2AF1   3830000 perm   6184 sec   (619 perm/sec)   p_kst 2.336815e-04   p_cons 1.017232e-03   p_joint 8.537859e-05

Joint ci ratio: 2.164365e-01	ci left: 7.617589e-05	ci right 9.490420e-05	k: 327	n:3840000
Cons ci ratio: 6.269009e-02	ci left: 9.852946e-04	ci right 1.049316e-03	k: 3905	n:3840000
KS ci ratio: 1.307240e-01	ci left: 2.188087e-04	ci right 2.496615e-04	k: 898	n:3840000
U2AF1   3840000 perm   6215 sec   (618 perm/sec)   p_kst 2.338542e-04   p_cons 1.016927e-03   p_joint 8.515625e-05

Joint ci ratio: 2.161073e-01	ci left: 7.622370e-05	ci right 9.493149e-05	k: 328	n:3850000
Cons ci ratio: 6.260200e-02	ci left: 9.855478e-04	ci right 1.049492e-03	k: 3916	n:3850000
KS ci ratio: 1.305788e-01	ci left: 2.187429e-04	ci right 2.495494e-04	k: 900	n:3850000
U2AF1   3850000 perm   6246 sec   (616 perm/sec)   p_kst 2.337662e-04   p_cons 1.017143e-03   p_joint 8.519481e-05

Joint ci ratio: 2.161074e-01	ci left: 7.602623e-05	ci right 9.468555e-05	k: 328	n:3860000
Cons ci ratio: 6.253021e-02	ci left: 9.852896e-04	ci right 1.049141e-03	k: 3925	n:3860000
KS ci ratio: 1.305065e-01	ci left: 2.184268e-04	ci right 2.491705e-04	k: 901	n:3860000
U2AF1   3860000 perm   6277 sec   (615 perm/sec)   p_kst 2.334197e-04   p_cons 1.016839e-03   p_joint 8.497409e-05

Joint ci ratio: 2.157797e-01	ci left: 7.607420e-05	ci right 9.471324e-05	k: 329	n:3870000
Cons ci ratio: 6.246662e-02	ci left: 9.847786e-04	ci right 1.048530e-03	k: 3933	n:3870000
KS ci ratio: 1.302900e-01	ci left: 2.186123e-04	ci right 2.493271e-04	k: 904	n:3870000
U2AF1   3870000 perm   6308 sec   (614 perm/sec)   p_kst 2.335917e-04   p_cons 1.016279e-03   p_joint 8.501292e-05

Joint ci ratio: 2.184440e-01	ci left: 7.392838e-05	ci right 9.229535e-05	k: 321	n:3880000
Cons ci ratio: 6.237155e-02	ci left: 9.852850e-04	ci right 1.048969e-03	k: 3945	n:3880000
KS ci ratio: 1.300029e-01	ci left: 2.190462e-04	ci right 2.497490e-04	k: 908	n:3880000
U2AF1   3880000 perm   6339 sec   (612 perm/sec)   p_kst 2.340206e-04   p_cons 1.016753e-03   p_joint 8.273196e-05

Joint ci ratio: 2.177687e-01	ci left: 7.422439e-05	ci right 9.260026e-05	k: 323	n:3890000
Cons ci ratio: 6.229267e-02	ci left: 9.852827e-04	ci right 1.048883e-03	k: 3955	n:3890000
KS ci ratio: 1.298602e-01	ci left: 2.189806e-04	ci right 2.496378e-04	k: 910	n:3890000
U2AF1   3890000 perm   6370 sec   (611 perm/sec)   p_kst 2.339332e-04   p_cons 1.016710e-03   p_joint 8.303342e-05

Joint ci ratio: 2.177687e-01	ci left: 7.403407e-05	ci right 9.236283e-05	k: 323	n:3900000
Cons ci ratio: 6.225338e-02	ci left: 9.840184e-04	ci right 1.047495e-03	k: 3960	n:3900000
KS ci ratio: 1.297890e-01	ci left: 2.186671e-04	ci right 2.492624e-04	k: 911	n:3900000
U2AF1   3900000 perm   6401 sec   (609 perm/sec)   p_kst 2.335897e-04   p_cons 1.015385e-03   p_joint 8.282051e-05

Joint ci ratio: 2.170996e-01	ci left: 7.432838e-05	ci right 9.266593e-05	k: 325	n:3910000
Cons ci ratio: 6.212016e-02	ci left: 9.857820e-04	ci right 1.049232e-03	k: 3977	n:3910000
KS ci ratio: 1.294346e-01	ci left: 2.193452e-04	ci right 2.499451e-04	k: 916	n:3910000
U2AF1   3910000 perm   6432 sec   (608 perm/sec)   p_kst 2.342711e-04   p_cons 1.017136e-03   p_joint 8.312020e-05

Joint ci ratio: 2.167674e-01	ci left: 7.438001e-05	ci right 9.269847e-05	k: 326	n:3920000
Cons ci ratio: 6.203445e-02	ci left: 9.860298e-04	ci right 1.049405e-03	k: 3988	n:3920000
KS ci ratio: 1.292937e-01	ci left: 2.192794e-04	ci right 2.498342e-04	k: 918	n:3920000
U2AF1   3920000 perm   6463 sec   (606 perm/sec)   p_kst 2.341837e-04   p_cons 1.017347e-03   p_joint 8.316327e-05

Joint ci ratio: 2.164367e-01	ci left: 7.443140e-05	ci right 9.273083e-05	k: 327	n:3930000
Cons ci ratio: 6.194133e-02	ci left: 9.865270e-04	ci right 1.049835e-03	k: 4000	n:3930000
KS ci ratio: 1.288736e-01	ci left: 2.201988e-04	ci right 2.507745e-04	k: 924	n:3930000
U2AF1   3930000 perm   6495 sec   (605 perm/sec)   p_kst 2.351145e-04   p_cons 1.017812e-03   p_joint 8.320611e-05

Joint ci ratio: 2.164368e-01	ci left: 7.424248e-05	ci right 9.249548e-05	k: 327	n:3940000
Cons ci ratio: 6.180241e-02	ci left: 9.885210e-04	ci right 1.051810e-03	k: 4018	n:3940000
KS ci ratio: 1.286651e-01	ci left: 2.203768e-04	ci right 2.509239e-04	k: 927	n:3940000
U2AF1   3940000 perm   6526 sec   (604 perm/sec)   p_kst 2.352792e-04   p_cons 1.019797e-03   p_joint 8.299492e-05

Joint ci ratio: 2.161076e-01	ci left: 7.429398e-05	ci right 9.252817e-05	k: 328	n:3950000
Cons ci ratio: 6.168736e-02	ci left: 9.897573e-04	ci right 1.053003e-03	k: 4033	n:3950000
KS ci ratio: 1.285267e-01	ci left: 2.203090e-04	ci right 2.508113e-04	k: 929	n:3950000
U2AF1   3950000 perm   6558 sec   (602 perm/sec)   p_kst 2.351899e-04   p_cons 1.021013e-03   p_joint 8.303797e-05

Joint ci ratio: 2.161076e-01	ci left: 7.410637e-05	ci right 9.229451e-05	k: 328	n:3960000
Cons ci ratio: 6.155013e-02	ci left: 9.917333e-04	ci right 1.054960e-03	k: 4051	n:3960000
KS ci ratio: 1.284577e-01	ci left: 2.199970e-04	ci right 2.504386e-04	k: 930	n:3960000
U2AF1   3960000 perm   6590 sec   (601 perm/sec)   p_kst 2.348485e-04   p_cons 1.022980e-03   p_joint 8.282828e-05

Joint ci ratio: 2.157799e-01	ci left: 7.415797e-05	ci right 9.232752e-05	k: 329	n:3970000
Cons ci ratio: 6.148190e-02	ci left: 9.914674e-04	ci right 1.054604e-03	k: 4060	n:3970000
KS ci ratio: 1.281141e-01	ci left: 2.206619e-04	ci right 2.511076e-04	k: 935	n:3970000
U2AF1   3970000 perm   6621 sec   (600 perm/sec)   p_kst 2.355164e-04   p_cons 1.022670e-03   p_joint 8.287154e-05

Joint ci ratio: 2.157799e-01	ci left: 7.397164e-05	ci right 9.209555e-05	k: 329	n:3980000
Cons ci ratio: 6.139879e-02	ci left: 9.916976e-04	ci right 1.054761e-03	k: 4071	n:3980000
KS ci ratio: 1.278412e-01	ci left: 2.210803e-04	ci right 2.515138e-04	k: 939	n:3980000
U2AF1   3980000 perm   6653 sec   (598 perm/sec)   p_kst 2.359296e-04   p_cons 1.022864e-03   p_joint 8.266332e-05

Joint ci ratio: 2.157799e-01	ci left: 7.378625e-05	ci right 9.186473e-05	k: 329	n:3990000
Cons ci ratio: 6.134611e-02	ci left: 9.909396e-04	ci right 1.053898e-03	k: 4078	n:3990000
KS ci ratio: 1.277733e-01	ci left: 2.207689e-04	ci right 2.511421e-04	k: 940	n:3990000
U2AF1   3990000 perm   6684 sec   (597 perm/sec)   p_kst 2.355890e-04   p_cons 1.022055e-03   p_joint 8.245614e-05

Joint ci ratio: 2.157800e-01	ci left: 7.360178e-05	ci right 9.163507e-05	k: 329	n:4000000
Cons ci ratio: 6.123359e-02	ci left: 9.921548e-04	ci right 1.055071e-03	k: 4093	n:4000000
KS ci ratio: 1.275025e-01	ci left: 2.211850e-04	ci right 2.515462e-04	k: 944	n:4000000
U2AF1   4000000 perm   6716 sec   (596 perm/sec)   p_kst 2.360000e-04   p_cons 1.023250e-03   p_joint 8.225000e-05

Joint ci ratio: 2.157800e-01	ci left: 7.341824e-05	ci right 9.140655e-05	k: 329	n:4010000
Cons ci ratio: 6.118880e-02	ci left: 9.911540e-04	ci right 1.053959e-03	k: 4099	n:4010000
KS ci ratio: 1.274351e-01	ci left: 2.208749e-04	ci right 2.511762e-04	k: 945	n:4010000
U2AF1   4010000 perm   6748 sec   (594 perm/sec)   p_kst 2.356608e-04   p_cons 1.022195e-03   p_joint 8.204489e-05

Joint ci ratio: 2.154538e-01	ci left: 7.347093e-05	ci right 9.144134e-05	k: 330	n:4020000
Cons ci ratio: 6.112921e-02	ci left: 9.906480e-04	ci right 1.053358e-03	k: 4107	n:4020000
KS ci ratio: 1.273679e-01	ci left: 2.205662e-04	ci right 2.508081e-04	k: 946	n:4020000
U2AF1   4020000 perm   6780 sec   (593 perm/sec)   p_kst 2.353234e-04   p_cons 1.021642e-03   p_joint 8.208955e-05

Joint ci ratio: 2.154538e-01	ci left: 7.328862e-05	ci right 9.121444e-05	k: 330	n:4030000
Cons ci ratio: 6.102528e-02	ci left: 9.916108e-04	ci right 1.054271e-03	k: 4121	n:4030000
KS ci ratio: 1.273679e-01	ci left: 2.200189e-04	ci right 2.501857e-04	k: 946	n:4030000
U2AF1   4030000 perm   6812 sec   (592 perm/sec)   p_kst 2.347395e-04   p_cons 1.022581e-03   p_joint 8.188586e-05

Joint ci ratio: 2.151291e-01	ci left: 7.334139e-05	ci right 9.124952e-05	k: 331	n:4040000
Cons ci ratio: 6.093663e-02	ci left: 9.920813e-04	ci right 1.054677e-03	k: 4133	n:4040000
KS ci ratio: 1.271666e-01	ci left: 2.201933e-04	ci right 2.503326e-04	k: 949	n:4040000
U2AF1   4040000 perm   6844 sec   (590 perm/sec)   p_kst 2.349010e-04   p_cons 1.023020e-03   p_joint 8.193069e-05

Joint ci ratio: 2.148058e-01	ci left: 7.339392e-05	ci right 9.128439e-05	k: 332	n:4050000
Cons ci ratio: 6.087778e-02	ci left: 9.915769e-04	ci right 1.054078e-03	k: 4141	n:4050000
KS ci ratio: 1.269663e-01	ci left: 2.203668e-04	ci right 2.504788e-04	k: 952	n:4050000
U2AF1   4050000 perm   6877 sec   (589 perm/sec)   p_kst 2.350617e-04   p_cons 1.022469e-03   p_joint 8.197531e-05

Joint ci ratio: 2.148058e-01	ci left: 7.321315e-05	ci right 9.105956e-05	k: 332	n:4060000
Cons ci ratio: 6.078977e-02	ci left: 9.920453e-04	ci right 1.054483e-03	k: 4153	n:4060000
KS ci ratio: 1.267669e-01	ci left: 2.205395e-04	ci right 2.506242e-04	k: 955	n:4060000
U2AF1   4060000 perm   6909 sec   (588 perm/sec)   p_kst 2.352217e-04   p_cons 1.022906e-03   p_joint 8.177340e-05

Joint ci ratio: 2.148059e-01	ci left: 7.303326e-05	ci right 9.083582e-05	k: 332	n:4070000
Cons ci ratio: 6.072403e-02	ci left: 9.917856e-04	ci right 1.054137e-03	k: 4162	n:4070000
KS ci ratio: 1.266345e-01	ci left: 2.204734e-04	ci right 2.505154e-04	k: 957	n:4070000
U2AF1   4070000 perm   6941 sec   (586 perm/sec)   p_kst 2.351351e-04   p_cons 1.022604e-03   p_joint 8.157248e-05

Joint ci ratio: 2.148059e-01	ci left: 7.285426e-05	ci right 9.061319e-05	k: 332	n:4080000
Cons ci ratio: 6.064396e-02	ci left: 9.920099e-04	ci right 1.054290e-03	k: 4173	n:4080000
KS ci ratio: 1.265685e-01	ci left: 2.201704e-04	ci right 2.501542e-04	k: 958	n:4080000
U2AF1   4080000 perm   6973 sec   (585 perm/sec)   p_kst 2.348039e-04   p_cons 1.022794e-03   p_joint 8.137255e-05

Joint ci ratio: 2.148059e-01	ci left: 7.267613e-05	ci right 9.039164e-05	k: 332	n:4090000
Cons ci ratio: 6.059319e-02	ci left: 9.912700e-04	ci right 1.053450e-03	k: 4180	n:4090000
KS ci ratio: 1.262398e-01	ci left: 2.208159e-04	ci right 2.508037e-04	k: 963	n:4090000
U2AF1   4090000 perm   7005 sec   (584 perm/sec)   p_kst 2.354523e-04   p_cons 1.022005e-03   p_joint 8.117359e-05

Joint ci ratio: 2.148059e-01	ci left: 7.249887e-05	ci right 9.017117e-05	k: 332	n:4100000
Cons ci ratio: 6.052086e-02	ci left: 9.912544e-04	ci right 1.053356e-03	k: 4190	n:4100000
KS ci ratio: 1.260438e-01	ci left: 2.209859e-04	ci right 2.509468e-04	k: 966	n:4100000
U2AF1   4100000 perm   7038 sec   (583 perm/sec)   p_kst 2.356098e-04   p_cons 1.021951e-03   p_joint 8.097561e-05

Joint ci ratio: 2.144841e-01	ci left: 7.255270e-05	ci right 9.020815e-05	k: 333	n:4110000
Cons ci ratio: 6.044159e-02	ci left: 9.914785e-04	ci right 1.053510e-03	k: 4201	n:4110000
KS ci ratio: 1.259787e-01	ci left: 2.206839e-04	ci right 2.505872e-04	k: 967	n:4110000
U2AF1   4110000 perm   7069 sec   (581 perm/sec)   p_kst 2.352798e-04   p_cons 1.022141e-03   p_joint 8.102190e-05

Joint ci ratio: 2.144841e-01	ci left: 7.237660e-05	ci right 8.998920e-05	k: 333	n:4120000
Cons ci ratio: 6.037697e-02	ci left: 9.912234e-04	ci right 1.053171e-03	k: 4210	n:4120000
KS ci ratio: 1.259137e-01	ci left: 2.203833e-04	ci right 2.502294e-04	k: 968	n:4120000
U2AF1   4120000 perm   7101 sec   (580 perm/sec)   p_kst 2.349515e-04   p_cons 1.021845e-03   p_joint 8.082524e-05

Joint ci ratio: 2.144842e-01	ci left: 7.220136e-05	ci right 8.977131e-05	k: 333	n:4130000
Cons ci ratio: 6.030541e-02	ci left: 9.912082e-04	ci right 1.053078e-03	k: 4220	n:4130000
KS ci ratio: 1.258488e-01	ci left: 2.200842e-04	ci right 2.498732e-04	k: 969	n:4130000
U2AF1   4130000 perm   7134 sec   (579 perm/sec)   p_kst 2.346247e-04   p_cons 1.021792e-03   p_joint 8.062954e-05

Joint ci ratio: 2.144842e-01	ci left: 7.202696e-05	ci right 8.955447e-05	k: 333	n:4140000
Cons ci ratio: 6.026976e-02	ci left: 9.900034e-04	ci right 1.051761e-03	k: 4225	n:4140000
KS ci ratio: 1.256546e-01	ci left: 2.202545e-04	ci right 2.500171e-04	k: 972	n:4140000
U2AF1   4140000 perm   7166 sec   (578 perm/sec)   p_kst 2.347826e-04   p_cons 1.020531e-03   p_joint 8.043478e-05

Joint ci ratio: 2.144842e-01	ci left: 7.185340e-05	ci right 8.933868e-05	k: 333	n:4150000
Cons ci ratio: 6.018436e-02	ci left: 9.904659e-04	ci right 1.052161e-03	k: 4237	n:4150000
KS ci ratio: 1.254614e-01	ci left: 2.204239e-04	ci right 2.501602e-04	k: 975	n:4150000
U2AF1   4150000 perm   7199 sec   (576 perm/sec)   p_kst 2.349398e-04   p_cons 1.020964e-03   p_joint 8.024096e-05

Joint ci ratio: 2.141638e-01	ci left: 7.190815e-05	ci right 8.937719e-05	k: 334	n:4160000
Cons ci ratio: 6.010640e-02	ci left: 9.906895e-04	ci right 1.052316e-03	k: 4248	n:4160000
KS ci ratio: 1.253330e-01	ci left: 2.203597e-04	ci right 2.500547e-04	k: 977	n:4160000
U2AF1   4160000 perm   7233 sec   (575 perm/sec)   p_kst 2.348558e-04   p_cons 1.021154e-03   p_joint 8.028846e-05

Joint ci ratio: 2.154541e-01	ci left: 7.082808e-05	ci right 8.815210e-05	k: 330	n:4170000
Cons ci ratio: 6.003580e-02	ci left: 9.906758e-04	ci right 1.052227e-03	k: 4258	n:4170000
KS ci ratio: 1.252051e-01	ci left: 2.202959e-04	ci right 2.499497e-04	k: 979	n:4170000
U2AF1   4170000 perm   7266 sec   (574 perm/sec)   p_kst 2.347722e-04   p_cons 1.021103e-03   p_joint 7.913669e-05

Joint ci ratio: 2.151294e-01	ci left: 7.088497e-05	ci right 8.819333e-05	k: 331	n:4180000
Cons ci ratio: 5.997951e-02	ci left: 9.901909e-04	ci right 1.051652e-03	k: 4266	n:4180000
KS ci ratio: 1.251413e-01	ci left: 2.200006e-04	ci right 2.495985e-04	k: 980	n:4180000
U2AF1   4180000 perm   7299 sec   (573 perm/sec)   p_kst 2.344498e-04   p_cons 1.020574e-03   p_joint 7.918660e-05

Joint ci ratio: 2.148061e-01	ci left: 7.094161e-05	ci right 8.823433e-05	k: 332	n:4190000
Cons ci ratio: 5.992338e-02	ci left: 9.897083e-04	ci right 1.051080e-03	k: 4274	n:4190000
KS ci ratio: 1.250776e-01	ci left: 2.197067e-04	ci right 2.492489e-04	k: 981	n:4190000
U2AF1   4190000 perm   7333 sec   (571 perm/sec)   p_kst 2.341289e-04   p_cons 1.020048e-03   p_joint 7.923628e-05

Joint ci ratio: 2.144843e-01	ci left: 7.099800e-05	ci right 8.827513e-05	k: 333	n:4200000
Cons ci ratio: 5.981151e-02	ci left: 9.911044e-04	ci right 1.052444e-03	k: 4290	n:4200000
KS ci ratio: 1.249504e-01	ci left: 2.196449e-04	ci right 2.491465e-04	k: 983	n:4200000
U2AF1   4200000 perm   7366 sec   (570 perm/sec)   p_kst 2.340476e-04   p_cons 1.021429e-03   p_joint 7.928571e-05

Joint ci ratio: 2.138450e-01	ci left: 7.127894e-05	ci right 8.856595e-05	k: 335	n:4210000
Cons ci ratio: 5.972110e-02	ci left: 9.917920e-04	ci right 1.053078e-03	k: 4303	n:4210000
KS ci ratio: 1.248236e-01	ci left: 2.195834e-04	ci right 2.490446e-04	k: 985	n:4210000
U2AF1   4210000 perm   7398 sec   (569 perm/sec)   p_kst 2.339667e-04   p_cons 1.022090e-03   p_joint 7.957245e-05

Joint ci ratio: 2.135275e-01	ci left: 7.133431e-05	ci right 8.860570e-05	k: 336	n:4220000
Cons ci ratio: 5.963800e-02	ci left: 9.922430e-04	ci right 1.053469e-03	k: 4315	n:4220000
KS ci ratio: 1.245711e-01	ci left: 2.199814e-04	ci right 2.494319e-04	k: 989	n:4220000
U2AF1   4220000 perm   7432 sec   (568 perm/sec)   p_kst 2.343602e-04   p_cons 1.022512e-03   p_joint 7.962085e-05

Joint ci ratio: 2.135275e-01	ci left: 7.116567e-05	ci right 8.839623e-05	k: 336	n:4230000
Cons ci ratio: 5.956904e-02	ci left: 9.922261e-04	ci right 1.053378e-03	k: 4325	n:4230000
KS ci ratio: 1.245712e-01	ci left: 2.194613e-04	ci right 2.488422e-04	k: 989	n:4230000
U2AF1   4230000 perm   7466 sec   (567 perm/sec)   p_kst 2.338061e-04   p_cons 1.022459e-03   p_joint 7.943262e-05

Joint ci ratio: 2.135275e-01	ci left: 7.099783e-05	ci right 8.818775e-05	k: 336	n:4240000
Cons ci ratio: 5.950718e-02	ci left: 9.919769e-04	ci right 1.053047e-03	k: 4334	n:4240000
KS ci ratio: 1.243203e-01	ci left: 2.198578e-04	ci right 2.492281e-04	k: 993	n:4240000
U2AF1   4240000 perm   7499 sec   (565 perm/sec)   p_kst 2.341981e-04   p_cons 1.022170e-03   p_joint 7.924528e-05

Joint ci ratio: 2.135275e-01	ci left: 7.083078e-05	ci right 8.798025e-05	k: 336	n:4250000
Cons ci ratio: 5.945236e-02	ci left: 9.914972e-04	ci right 1.052480e-03	k: 4342	n:4250000
KS ci ratio: 1.241954e-01	ci left: 2.197964e-04	ci right 2.491268e-04	k: 995	n:4250000
U2AF1   4250000 perm   7532 sec   (564 perm/sec)   p_kst 2.341176e-04   p_cons 1.021647e-03   p_joint 7.905882e-05

Joint ci ratio: 2.135275e-01	ci left: 7.066451e-05	ci right 8.777373e-05	k: 336	n:4260000
Cons ci ratio: 5.936356e-02	ci left: 9.921761e-04	ci right 1.053106e-03	k: 4355	n:4260000
KS ci ratio: 1.241954e-01	ci left: 2.192805e-04	ci right 2.485420e-04	k: 995	n:4260000
U2AF1   4260000 perm   7565 sec   (563 perm/sec)   p_kst 2.335681e-04   p_cons 1.022300e-03   p_joint 7.887324e-05

Joint ci ratio: 2.132114e-01	ci left: 7.072069e-05	ci right 8.781486e-05	k: 337	n:4270000
Cons ci ratio: 5.930914e-02	ci left: 9.916982e-04	ci right 1.052541e-03	k: 4363	n:4270000
KS ci ratio: 1.239468e-01	ci left: 2.196746e-04	ci right 2.489258e-04	k: 999	n:4270000
U2AF1   4270000 perm   7599 sec   (562 perm/sec)   p_kst 2.339578e-04   p_cons 1.021780e-03   p_joint 7.892272e-05

Joint ci ratio: 2.128967e-01	ci left: 7.077664e-05	ci right 8.785577e-05	k: 338	n:4280000
Cons ci ratio: 5.926844e-02	ci left: 9.907623e-04	ci right 1.051505e-03	k: 4369	n:4280000
KS ci ratio: 1.238230e-01	ci left: 2.196142e-04	ci right 2.488260e-04	k: 1001	n:4280000
U2AF1   4280000 perm   7632 sec   (561 perm/sec)   p_kst 2.338785e-04   p_cons 1.020794e-03   p_joint 7.897196e-05

Joint ci ratio: 2.128967e-01	ci left: 7.061166e-05	ci right 8.765098e-05	k: 338	n:4290000
Cons ci ratio: 5.922105e-02	ci left: 9.900603e-04	ci right 1.050710e-03	k: 4376	n:4290000
KS ci ratio: 1.238230e-01	ci left: 2.191022e-04	ci right 2.482460e-04	k: 1001	n:4290000
U2AF1   4290000 perm   7667 sec   (560 perm/sec)   p_kst 2.333333e-04   p_cons 1.020047e-03   p_joint 7.878788e-05

Joint ci ratio: 2.128968e-01	ci left: 7.044744e-05	ci right 8.744714e-05	k: 338	n:4300000
Cons ci ratio: 5.915351e-02	ci left: 9.900490e-04	ci right 1.050626e-03	k: 4386	n:4300000
KS ci ratio: 1.236381e-01	ci left: 2.192688e-04	ci right 2.483879e-04	k: 1004	n:4300000
U2AF1   4300000 perm   7701 sec   (558 perm/sec)   p_kst 2.334884e-04   p_cons 1.020000e-03   p_joint 7.860465e-05

Joint ci ratio: 2.122715e-01	ci left: 7.072333e-05	ci right 8.773295e-05	k: 340	n:4310000
Cons ci ratio: 5.908621e-02	ci left: 9.900378e-04	ci right 1.050543e-03	k: 4396	n:4310000
KS ci ratio: 1.232706e-01	ci left: 2.201092e-04	ci right 2.492467e-04	k: 1010	n:4310000
U2AF1   4310000 perm   7735 sec   (557 perm/sec)   p_kst 2.343387e-04   p_cons 1.019954e-03   p_joint 7.888631e-05

Joint ci ratio: 2.122715e-01	ci left: 7.055961e-05	ci right 8.752987e-05	k: 340	n:4320000
Cons ci ratio: 5.901244e-02	ci left: 9.902548e-04	ci right 1.050695e-03	k: 4407	n:4320000
KS ci ratio: 1.232097e-01	ci left: 2.198240e-04	ci right 2.489083e-04	k: 1011	n:4320000
U2AF1   4320000 perm   7770 sec   (556 perm/sec)   p_kst 2.340278e-04   p_cons 1.020139e-03   p_joint 7.870370e-05

Joint ci ratio: 2.119609e-01	ci left: 7.061534e-05	ci right 8.757092e-05	k: 341	n:4330000
Cons ci ratio: 5.894561e-02	ci left: 9.902432e-04	ci right 1.050612e-03	k: 4417	n:4330000
KS ci ratio: 1.231489e-01	ci left: 2.195401e-04	ci right 2.485715e-04	k: 1012	n:4330000
U2AF1   4330000 perm   7804 sec   (555 perm/sec)   p_kst 2.337182e-04   p_cons 1.020092e-03   p_joint 7.875289e-05

Joint ci ratio: 2.116517e-01	ci left: 7.067082e-05	ci right 8.761176e-05	k: 342	n:4340000
Cons ci ratio: 5.889899e-02	ci left: 9.895507e-04	ci right 1.049828e-03	k: 4424	n:4340000
KS ci ratio: 1.229669e-01	ci left: 2.197043e-04	ci right 2.487113e-04	k: 1015	n:4340000
U2AF1   4340000 perm   7839 sec   (554 perm/sec)   p_kst 2.338710e-04   p_cons 1.019355e-03   p_joint 7.880184e-05

Joint ci ratio: 2.113439e-01	ci left: 7.072607e-05	ci right 8.765240e-05	k: 343	n:4350000
Cons ci ratio: 5.885913e-02	ci left: 9.886348e-04	ci right 1.048814e-03	k: 4430	n:4350000
KS ci ratio: 1.228461e-01	ci left: 2.196448e-04	ci right 2.486135e-04	k: 1017	n:4350000
U2AF1   4350000 perm   7874 sec   (552 perm/sec)   p_kst 2.337931e-04   p_cons 1.018391e-03   p_joint 7.885057e-05

Joint ci ratio: 2.110373e-01	ci left: 7.078108e-05	ci right 8.769283e-05	k: 344	n:4360000
Cons ci ratio: 5.876634e-02	ci left: 9.895311e-04	ci right 1.049667e-03	k: 4444	n:4360000
KS ci ratio: 1.226655e-01	ci left: 2.198080e-04	ci right 2.487524e-04	k: 1020	n:4360000
U2AF1   4360000 perm   7909 sec   (551 perm/sec)   p_kst 2.339450e-04   p_cons 1.019266e-03   p_joint 7.889908e-05

Joint ci ratio: 2.110374e-01	ci left: 7.061911e-05	ci right 8.749216e-05	k: 344	n:4370000
Cons ci ratio: 5.871354e-02	ci left: 9.890705e-04	ci right 1.049122e-03	k: 4452	n:4370000
KS ci ratio: 1.226055e-01	ci left: 2.195268e-04	ci right 2.484191e-04	k: 1021	n:4370000
U2AF1   4370000 perm   7944 sec   (550 perm/sec)   p_kst 2.336384e-04   p_cons 1.018764e-03   p_joint 7.871854e-05

Joint ci ratio: 2.110374e-01	ci left: 7.045788e-05	ci right 8.729241e-05	k: 344	n:4380000
Cons ci ratio: 5.861487e-02	ci left: 9.901868e-04	ci right 1.050202e-03	k: 4467	n:4380000
KS ci ratio: 1.224857e-01	ci left: 2.194682e-04	ci right 2.483225e-04	k: 1023	n:4380000
U2AF1   4380000 perm   7978 sec   (549 perm/sec)   p_kst 2.335616e-04   p_cons 1.019863e-03   p_joint 7.853881e-05

Joint ci ratio: 2.107322e-01	ci left: 7.051315e-05	ci right 8.733337e-05	k: 345	n:4390000
Cons ci ratio: 5.854939e-02	ci left: 9.901758e-04	ci right 1.050121e-03	k: 4477	n:4390000
KS ci ratio: 1.223662e-01	ci left: 2.194099e-04	ci right 2.482264e-04	k: 1025	n:4390000
U2AF1   4390000 perm   8013 sec   (548 perm/sec)   p_kst 2.334852e-04   p_cons 1.019818e-03   p_joint 7.858770e-05

Joint ci ratio: 2.104283e-01	ci left: 7.056818e-05	ci right 8.737412e-05	k: 346	n:4400000
Cons ci ratio: 5.848412e-02	ci left: 9.901649e-04	ci right 1.050040e-03	k: 4487	n:4400000
KS ci ratio: 1.223067e-01	ci left: 2.191316e-04	ci right 2.478964e-04	k: 1026	n:4400000
U2AF1   4400000 perm   8048 sec   (547 perm/sec)   p_kst 2.331818e-04   p_cons 1.019773e-03   p_joint 7.863636e-05

Joint ci ratio: 2.101257e-01	ci left: 7.062297e-05	ci right 8.741467e-05	k: 347	n:4410000
Cons ci ratio: 5.841908e-02	ci left: 9.901540e-04	ci right 1.049960e-03	k: 4497	n:4410000
KS ci ratio: 1.221284e-01	ci left: 2.192942e-04	ci right 2.480354e-04	k: 1029	n:4410000
U2AF1   4410000 perm   8082 sec   (546 perm/sec)   p_kst 2.333333e-04   p_cons 1.019728e-03   p_joint 7.868481e-05

Joint ci ratio: 2.101258e-01	ci left: 7.046319e-05	ci right 8.721690e-05	k: 347	n:4420000
Cons ci ratio: 5.834777e-02	ci left: 9.903662e-04	ci right 1.050110e-03	k: 4508	n:4420000
KS ci ratio: 1.221284e-01	ci left: 2.187980e-04	ci right 2.474742e-04	k: 1029	n:4420000
U2AF1   4420000 perm   8117 sec   (545 perm/sec)   p_kst 2.328054e-04   p_cons 1.019910e-03   p_joint 7.850679e-05

Joint ci ratio: 2.101258e-01	ci left: 7.030413e-05	ci right 8.702003e-05	k: 347	n:4430000
Cons ci ratio: 5.827027e-02	ci left: 9.908000e-04	ci right 1.050487e-03	k: 4520	n:4430000
KS ci ratio: 1.221285e-01	ci left: 2.183041e-04	ci right 2.469156e-04	k: 1029	n:4430000
U2AF1   4430000 perm   8151 sec   (543 perm/sec)   p_kst 2.322799e-04   p_cons 1.020316e-03   p_joint 7.832957e-05

Joint ci ratio: 2.101258e-01	ci left: 7.014579e-05	ci right 8.682404e-05	k: 347	n:4440000
Cons ci ratio: 5.823811e-02	ci left: 9.896781e-04	ci right 1.049264e-03	k: 4525	n:4440000
KS ci ratio: 1.218920e-01	ci left: 2.186859e-04	ci right 2.472879e-04	k: 1033	n:4440000
U2AF1   4440000 perm   8186 sec   (542 perm/sec)   p_kst 2.326577e-04   p_cons 1.019144e-03   p_joint 7.815315e-05

Joint ci ratio: 2.101258e-01	ci left: 6.998816e-05	ci right 8.662893e-05	k: 347	n:4450000
Cons ci ratio: 5.817388e-02	ci left: 9.896686e-04	ci right 1.049186e-03	k: 4535	n:4450000
KS ci ratio: 1.218331e-01	ci left: 2.184123e-04	ci right 2.469637e-04	k: 1034	n:4450000
U2AF1   4450000 perm   8222 sec   (541 perm/sec)   p_kst 2.323596e-04   p_cons 1.019101e-03   p_joint 7.797753e-05

Joint ci ratio: 2.092259e-01	ci left: 7.046856e-05	ci right 8.714260e-05	k: 350	n:4460000
Cons ci ratio: 5.809707e-02	ci left: 9.901011e-04	ci right 1.049563e-03	k: 4547	n:4460000
KS ci ratio: 1.216569e-01	ci left: 2.185748e-04	ci right 2.471031e-04	k: 1037	n:4460000
U2AF1   4460000 perm   8257 sec   (540 perm/sec)   p_kst 2.325112e-04   p_cons 1.019507e-03   p_joint 7.847534e-05

Joint ci ratio: 2.089285e-01	ci left: 7.052292e-05	ci right 8.718306e-05	k: 351	n:4470000
Cons ci ratio: 5.805881e-02	ci left: 9.892089e-04	ci right 1.048577e-03	k: 4553	n:4470000
KS ci ratio: 1.215984e-01	ci left: 2.183027e-04	ci right 2.467808e-04	k: 1038	n:4470000
U2AF1   4470000 perm   8292 sec   (539 perm/sec)   p_kst 2.322148e-04   p_cons 1.018568e-03   p_joint 7.852349e-05

Joint ci ratio: 2.086323e-01	ci left: 7.057705e-05	ci right 8.722333e-05	k: 352	n:4480000
Cons ci ratio: 5.797611e-02	ci left: 9.898605e-04	ci right 1.049180e-03	k: 4566	n:4480000
KS ci ratio: 1.214232e-01	ci left: 2.184647e-04	ci right 2.469200e-04	k: 1041	n:4480000
U2AF1   4480000 perm   8327 sec   (538 perm/sec)   p_kst 2.323661e-04   p_cons 1.019196e-03   p_joint 7.857143e-05

Joint ci ratio: 2.083374e-01	ci left: 7.063095e-05	ci right 8.726339e-05	k: 353	n:4490000
Cons ci ratio: 5.792541e-02	ci left: 9.894119e-04	ci right 1.048651e-03	k: 4574	n:4490000
KS ci ratio: 1.213650e-01	ci left: 2.181941e-04	ci right 2.465995e-04	k: 1042	n:4490000
U2AF1   4490000 perm   8364 sec   (537 perm/sec)   p_kst 2.320713e-04   p_cons 1.018708e-03   p_joint 7.861915e-05

Joint ci ratio: 2.083374e-01	ci left: 7.047399e-05	ci right 8.706948e-05	k: 353	n:4500000
Cons ci ratio: 5.784958e-02	ci left: 9.898413e-04	ci right 1.049026e-03	k: 4586	n:4500000
KS ci ratio: 1.213069e-01	ci left: 2.179247e-04	ci right 2.462805e-04	k: 1043	n:4500000
U2AF1   4500000 perm   8399 sec   (536 perm/sec)   p_kst 2.317778e-04   p_cons 1.019111e-03   p_joint 7.844444e-05

Joint ci ratio: 2.074602e-01	ci left: 7.094829e-05	ci right 8.757618e-05	k: 356	n:4510000
Cons ci ratio: 5.782441e-02	ci left: 9.885206e-04	ci right 1.047600e-03	k: 4590	n:4510000
KS ci ratio: 1.210751e-01	ci left: 2.183015e-04	ci right 2.466482e-04	k: 1047	n:4510000
U2AF1   4510000 perm   8435 sec   (535 perm/sec)   p_kst 2.321508e-04   p_cons 1.017738e-03   p_joint 7.893570e-05

Joint ci ratio: 2.068814e-01	ci left: 7.121085e-05	ci right 8.784783e-05	k: 358	n:4520000
Cons ci ratio: 5.775526e-02	ci left: 9.887320e-04	ci right 1.047751e-03	k: 4601	n:4520000
KS ci ratio: 1.207873e-01	ci left: 2.188913e-04	ci right 2.472421e-04	k: 1052	n:4520000
U2AF1   4520000 perm   8470 sec   (534 perm/sec)   p_kst 2.327434e-04   p_cons 1.017920e-03   p_joint 7.920354e-05

Joint ci ratio: 2.138456e-01	ci left: 6.624376e-05	ci right 8.230966e-05	k: 335	n:4530000
Cons ci ratio: 5.771767e-02	ci left: 9.878548e-04	ci right 1.046782e-03	k: 4607	n:4530000
KS ci ratio: 1.207300e-01	ci left: 2.186222e-04	ci right 2.469238e-04	k: 1053	n:4530000
U2AF1   4530000 perm   8505 sec   (533 perm/sec)   p_kst 2.324503e-04   p_cons 1.016998e-03   p_joint 7.395143e-05

Joint ci ratio: 2.135281e-01	ci left: 6.630633e-05	ci right 8.236039e-05	k: 336	n:4540000
Cons ci ratio: 5.764890e-02	ci left: 9.880668e-04	ci right 1.046934e-03	k: 4618	n:4540000
KS ci ratio: 1.205585e-01	ci left: 2.187815e-04	ci right 2.470606e-04	k: 1056	n:4540000
U2AF1   4540000 perm   8541 sec   (532 perm/sec)   p_kst 2.325991e-04   p_cons 1.017181e-03   p_joint 7.400881e-05

Joint ci ratio: 2.135281e-01	ci left: 6.616060e-05	ci right 8.217938e-05	k: 336	n:4550000
Cons ci ratio: 5.761152e-02	ci left: 9.871949e-04	ci right 1.045971e-03	k: 4624	n:4550000
KS ci ratio: 1.205016e-01	ci left: 2.185138e-04	ci right 2.467440e-04	k: 1057	n:4550000
U2AF1   4550000 perm   8578 sec   (530 perm/sec)   p_kst 2.323077e-04   p_cons 1.016264e-03   p_joint 7.384615e-05

Joint ci ratio: 2.128972e-01	ci left: 6.643069e-05	ci right 8.246114e-05	k: 338	n:4560000
Cons ci ratio: 5.752449e-02	ci left: 9.880560e-04	ci right 1.046791e-03	k: 4638	n:4560000
KS ci ratio: 1.202178e-01	ci left: 2.190981e-04	ci right 2.473324e-04	k: 1062	n:4560000
U2AF1   4560000 perm   8614 sec   (529 perm/sec)   p_kst 2.328947e-04   p_cons 1.017105e-03   p_joint 7.412281e-05

Joint ci ratio: 2.128973e-01	ci left: 6.628532e-05	ci right 8.228070e-05	k: 338	n:4570000
Cons ci ratio: 5.748736e-02	ci left: 9.871880e-04	ci right 1.045832e-03	k: 4644	n:4570000
KS ci ratio: 1.202178e-01	ci left: 2.186186e-04	ci right 2.467912e-04	k: 1062	n:4570000
U2AF1   4570000 perm   8650 sec   (528 perm/sec)   p_kst 2.323851e-04   p_cons 1.016193e-03   p_joint 7.396061e-05

Joint ci ratio: 2.125839e-01	ci left: 6.634730e-05	ci right 8.233101e-05	k: 339	n:4580000
Cons ci ratio: 5.741940e-02	ci left: 9.873998e-04	ci right 1.045985e-03	k: 4655	n:4580000
KS ci ratio: 1.200485e-01	ci left: 2.187766e-04	ci right 2.469270e-04	k: 1065	n:4580000
U2AF1   4580000 perm   8686 sec   (527 perm/sec)   p_kst 2.325328e-04   p_cons 1.016376e-03   p_joint 7.401747e-05

Joint ci ratio: 2.125840e-01	ci left: 6.620276e-05	ci right 8.215164e-05	k: 339	n:4590000
Cons ci ratio: 5.727802e-02	ci left: 9.901877e-04	ci right 1.048789e-03	k: 4678	n:4590000
KS ci ratio: 1.200486e-01	ci left: 2.183000e-04	ci right 2.463891e-04	k: 1065	n:4590000
U2AF1   4590000 perm   8722 sec   (526 perm/sec)   p_kst 2.320261e-04   p_cons 1.019172e-03   p_joint 7.385621e-05

Joint ci ratio: 2.125840e-01	ci left: 6.605884e-05	ci right 8.197305e-05	k: 339	n:4600000
Cons ci ratio: 5.722913e-02	ci left: 9.897493e-04	ci right 1.048273e-03	k: 4686	n:4600000
KS ci ratio: 1.200486e-01	ci left: 2.178254e-04	ci right 2.458534e-04	k: 1065	n:4600000
U2AF1   4600000 perm   8758 sec   (525 perm/sec)   p_kst 2.315217e-04   p_cons 1.018696e-03   p_joint 7.369565e-05

Joint ci ratio: 2.122720e-01	ci left: 6.612092e-05	ci right 8.202367e-05	k: 340	n:4610000
Cons ci ratio: 5.714383e-02	ci left: 9.905959e-04	ci right 1.049079e-03	k: 4700	n:4610000
KS ci ratio: 1.198800e-01	ci left: 2.179842e-04	ci right 2.459904e-04	k: 1068	n:4610000
U2AF1   4610000 perm   8797 sec   (524 perm/sec)   p_kst 2.316703e-04   p_cons 1.019523e-03   p_joint 7.375271e-05

Joint ci ratio: 2.122720e-01	ci left: 6.597780e-05	ci right 8.184614e-05	k: 340	n:4620000
Cons ci ratio: 5.711957e-02	ci left: 9.893051e-04	ci right 1.047687e-03	k: 4704	n:4620000
KS ci ratio: 1.198240e-01	ci left: 2.177223e-04	ci right 2.456809e-04	k: 1069	n:4620000
U2AF1   4620000 perm   8833 sec   (523 perm/sec)   p_kst 2.313853e-04   p_cons 1.018182e-03   p_joint 7.359307e-05

Joint ci ratio: 2.116522e-01	ci left: 6.624434e-05	ci right 8.212422e-05	k: 342	n:4630000
Cons ci ratio: 5.705291e-02	ci left: 9.895103e-04	ci right 1.047834e-03	k: 4715	n:4630000
KS ci ratio: 1.195450e-01	ci left: 2.182996e-04	ci right 2.462625e-04	k: 1074	n:4630000
U2AF1   4630000 perm   8870 sec   (522 perm/sec)   p_kst 2.319654e-04   p_cons 1.018359e-03   p_joint 7.386609e-05

Joint ci ratio: 2.107326e-01	ci left: 6.671393e-05	ci right 8.262792e-05	k: 345	n:4640000
Cons ci ratio: 5.699856e-02	ci left: 9.892897e-04	ci right 1.047543e-03	k: 4724	n:4640000
KS ci ratio: 1.193232e-01	ci left: 2.186655e-04	ci right 2.466196e-04	k: 1078	n:4640000
U2AF1   4640000 perm   8907 sec   (521 perm/sec)   p_kst 2.323276e-04   p_cons 1.018103e-03   p_joint 7.435345e-05

Joint ci ratio: 2.104288e-01	ci left: 6.677417e-05	ci right 8.267661e-05	k: 346	n:4650000
Cons ci ratio: 5.694436e-02	ci left: 9.890701e-04	ci right 1.047253e-03	k: 4733	n:4650000
KS ci ratio: 1.191576e-01	ci left: 2.188212e-04	ci right 2.467536e-04	k: 1081	n:4650000
U2AF1   4650000 perm   8944 sec   (520 perm/sec)   p_kst 2.324731e-04   p_cons 1.017849e-03   p_joint 7.440860e-05

Joint ci ratio: 2.104288e-01	ci left: 6.663088e-05	ci right 8.249919e-05	k: 346	n:4660000
Cons ci ratio: 5.688431e-02	ci left: 9.890631e-04	ci right 1.047182e-03	k: 4743	n:4660000
KS ci ratio: 1.190477e-01	ci left: 2.187680e-04	ci right 2.466661e-04	k: 1083	n:4660000
U2AF1   4660000 perm   8980 sec   (519 perm/sec)   p_kst 2.324034e-04   p_cons 1.017811e-03   p_joint 7.424893e-05

Joint ci ratio: 2.104288e-01	ci left: 6.648820e-05	ci right 8.232253e-05	k: 346	n:4670000
Cons ci ratio: 5.681249e-02	ci left: 9.894782e-04	ci right 1.047546e-03	k: 4755	n:4670000
KS ci ratio: 1.189928e-01	ci left: 2.185073e-04	ci right 2.463584e-04	k: 1084	n:4670000
U2AF1   4670000 perm   9017 sec   (518 perm/sec)   p_kst 2.321199e-04   p_cons 1.018201e-03   p_joint 7.408994e-05

Joint ci ratio: 2.029618e-01	ci left: 7.161426e-05	ci right 8.798921e-05	k: 372	n:4680000
Cons ci ratio: 5.674094e-02	ci left: 9.898917e-04	ci right 1.047908e-03	k: 4767	n:4680000
KS ci ratio: 1.188286e-01	ci left: 2.186623e-04	ci right 2.464920e-04	k: 1087	n:4680000
U2AF1   4680000 perm   9054 sec   (517 perm/sec)   p_kst 2.322650e-04   p_cons 1.018590e-03   p_joint 7.948718e-05

Joint ci ratio: 2.029618e-01	ci left: 7.146157e-05	ci right 8.780160e-05	k: 372	n:4690000
Cons ci ratio: 5.666967e-02	ci left: 9.903034e-04	ci right 1.048269e-03	k: 4779	n:4690000
KS ci ratio: 1.188287e-01	ci left: 2.181961e-04	ci right 2.459665e-04	k: 1087	n:4690000
U2AF1   4690000 perm   9091 sec   (516 perm/sec)   p_kst 2.317697e-04   p_cons 1.018977e-03   p_joint 7.931770e-05

Joint ci ratio: 2.029618e-01	ci left: 7.130952e-05	ci right 8.761479e-05	k: 372	n:4700000
Cons ci ratio: 5.660457e-02	ci left: 9.905036e-04	ci right 1.048412e-03	k: 4790	n:4700000
KS ci ratio: 1.187196e-01	ci left: 2.181448e-04	ci right 2.458813e-04	k: 1089	n:4700000
U2AF1   4700000 perm   9128 sec   (515 perm/sec)   p_kst 2.317021e-04   p_cons 1.019149e-03   p_joint 7.914894e-05

Joint ci ratio: 2.029618e-01	ci left: 7.115812e-05	ci right 8.742877e-05	k: 372	n:4710000
Cons ci ratio: 5.656328e-02	ci left: 9.898658e-04	ci right 1.047693e-03	k: 4797	n:4710000
KS ci ratio: 1.186108e-01	ci left: 2.180936e-04	ci right 2.457965e-04	k: 1091	n:4710000
U2AF1   4710000 perm   9166 sec   (514 perm/sec)   p_kst 2.316348e-04   p_cons 1.018471e-03   p_joint 7.898089e-05

Joint ci ratio: 2.026903e-01	ci left: 7.120847e-05	ci right 8.746615e-05	k: 373	n:4720000
Cons ci ratio: 5.650443e-02	ci left: 9.898573e-04	ci right 1.047622e-03	k: 4807	n:4720000
KS ci ratio: 1.183402e-01	ci left: 2.186595e-04	ci right 2.463664e-04	k: 1096	n:4720000
U2AF1   4720000 perm   9203 sec   (513 perm/sec)   p_kst 2.322034e-04   p_cons 1.018432e-03   p_joint 7.902542e-05

Joint ci ratio: 2.024199e-01	ci left: 7.125861e-05	ci right 8.750336e-05	k: 374	n:4730000
Cons ci ratio: 5.643990e-02	ci left: 9.900574e-04	ci right 1.047766e-03	k: 4818	n:4730000
KS ci ratio: 1.182325e-01	ci left: 2.186075e-04	ci right 2.462809e-04	k: 1098	n:4730000
U2AF1   4730000 perm   9241 sec   (512 perm/sec)   p_kst 2.321353e-04   p_cons 1.018605e-03   p_joint 7.906977e-05

Joint ci ratio: 2.024199e-01	ci left: 7.110828e-05	ci right 8.731875e-05	k: 374	n:4740000
Cons ci ratio: 5.636975e-02	ci left: 9.904646e-04	ci right 1.048122e-03	k: 4830	n:4740000
KS ci ratio: 1.181787e-01	ci left: 2.183511e-04	ci right 2.459785e-04	k: 1099	n:4740000
U2AF1   4740000 perm   9279 sec   (511 perm/sec)   p_kst 2.318565e-04   p_cons 1.018987e-03   p_joint 7.890295e-05

Joint ci ratio: 2.035083e-01	ci left: 7.015926e-05	ci right 8.625009e-05	k: 370	n:4750000
Cons ci ratio: 5.633480e-02	ci left: 9.896247e-04	ci right 1.047197e-03	k: 4836	n:4750000
KS ci ratio: 1.180179e-01	ci left: 2.185043e-04	ci right 2.461109e-04	k: 1102	n:4750000
U2AF1   4750000 perm   9317 sec   (510 perm/sec)   p_kst 2.320000e-04   p_cons 1.018105e-03   p_joint 7.789474e-05

Joint ci ratio: 2.032346e-01	ci left: 7.021126e-05	ci right 8.628966e-05	k: 371	n:4760000
Cons ci ratio: 5.627085e-02	ci left: 9.898241e-04	ci right 1.047340e-03	k: 4847	n:4760000
KS ci ratio: 1.179110e-01	ci left: 2.184530e-04	ci right 2.460264e-04	k: 1104	n:4760000
U2AF1   4760000 perm   9356 sec   (509 perm/sec)   p_kst 2.319328e-04   p_cons 1.018277e-03   p_joint 7.794118e-05

Joint ci ratio: 2.026904e-01	ci left: 7.046204e-05	ci right 8.654932e-05	k: 373	n:4770000
Cons ci ratio: 5.621290e-02	ci left: 9.898160e-04	ci right 1.047271e-03	k: 4857	n:4770000
KS ci ratio: 1.177513e-01	ci left: 2.186055e-04	ci right 2.461581e-04	k: 1107	n:4770000
U2AF1   4770000 perm   9393 sec   (508 perm/sec)   p_kst 2.320755e-04   p_cons 1.018239e-03   p_joint 7.819706e-05

Joint ci ratio: 2.016151e-01	ci left: 7.110910e-05	ci right 8.724737e-05	k: 377	n:4780000
Cons ci ratio: 5.612629e-02	ci left: 9.908392e-04	ci right 1.048262e-03	k: 4872	n:4780000
KS ci ratio: 1.174865e-01	ci left: 2.191634e-04	ci right 2.467199e-04	k: 1112	n:4780000
U2AF1   4780000 perm   9431 sec   (507 perm/sec)   p_kst 2.326360e-04   p_cons 1.019247e-03   p_joint 7.887029e-05

Joint ci ratio: 2.016151e-01	ci left: 7.096064e-05	ci right 8.706523e-05	k: 377	n:4790000
Cons ci ratio: 5.609755e-02	ci left: 9.897999e-04	ci right 1.047132e-03	k: 4877	n:4790000
KS ci ratio: 1.174337e-01	ci left: 2.189085e-04	ci right 2.464198e-04	k: 1113	n:4790000
U2AF1   4790000 perm   9470 sec   (506 perm/sec)   p_kst 2.323591e-04   p_cons 1.018163e-03   p_joint 7.870564e-05

Joint ci ratio: 2.010838e-01	ci left: 7.120847e-05	ci right 8.732149e-05	k: 379	n:4800000
Cons ci ratio: 5.604588e-02	ci left: 9.895865e-04	ci right 1.046852e-03	k: 4886	n:4800000
KS ci ratio: 1.172759e-01	ci left: 2.190591e-04	ci right 2.465497e-04	k: 1116	n:4800000
U2AF1   4800000 perm   9507 sec   (505 perm/sec)   p_kst 2.325000e-04   p_cons 1.017917e-03   p_joint 7.895833e-05

Joint ci ratio: 2.010838e-01	ci left: 7.106043e-05	ci right 8.713995e-05	k: 379	n:4810000
Cons ci ratio: 5.596575e-02	ci left: 9.903990e-04	ci right 1.047626e-03	k: 4900	n:4810000
KS ci ratio: 1.172235e-01	ci left: 2.188054e-04	ci right 2.462511e-04	k: 1117	n:4810000
U2AF1   4810000 perm   9546 sec   (504 perm/sec)   p_kst 2.322245e-04   p_cons 1.018711e-03   p_joint 7.879418e-05

Joint ci ratio: 2.008197e-01	ci left: 7.111003e-05	ci right 8.717705e-05	k: 380	n:4820000
Cons ci ratio: 5.590874e-02	ci left: 9.903899e-04	ci right 1.047557e-03	k: 4910	n:4820000
KS ci ratio: 1.170665e-01	ci left: 2.189557e-04	ci right 2.463809e-04	k: 1120	n:4820000
U2AF1   4820000 perm   9584 sec   (503 perm/sec)   p_kst 2.323651e-04   p_cons 1.018672e-03   p_joint 7.883817e-05

Joint ci ratio: 2.005567e-01	ci left: 7.115944e-05	ci right 8.721399e-05	k: 381	n:4830000
Cons ci ratio: 5.582352e-02	ci left: 9.914016e-04	ci right 1.048537e-03	k: 4925	n:4830000
KS ci ratio: 1.170144e-01	ci left: 2.187033e-04	ci right 2.460839e-04	k: 1121	n:4830000
U2AF1   4830000 perm   9623 sec   (502 perm/sec)   p_kst 2.320911e-04   p_cons 1.019669e-03   p_joint 7.888199e-05

Joint ci ratio: 1.995148e-01	ci left: 7.179747e-05	ci right 8.790158e-05	k: 385	n:4840000
Cons ci ratio: 5.575564e-02	ci left: 9.917980e-04	ci right 1.048884e-03	k: 4937	n:4840000
KS ci ratio: 1.167545e-01	ci left: 2.192543e-04	ci right 2.466387e-04	k: 1126	n:4840000
U2AF1   4840000 perm   9661 sec   (501 perm/sec)   p_kst 2.326446e-04   p_cons 1.020041e-03   p_joint 7.954545e-05

Joint ci ratio: 1.995148e-01	ci left: 7.164944e-05	ci right 8.772034e-05	k: 385	n:4850000
Cons ci ratio: 5.571055e-02	ci left: 9.913796e-04	ci right 1.048394e-03	k: 4945	n:4850000
KS ci ratio: 1.167545e-01	ci left: 2.188022e-04	ci right 2.461302e-04	k: 1126	n:4850000
U2AF1   4850000 perm   9700 sec   (500 perm/sec)   p_kst 2.321649e-04   p_cons 1.019588e-03   p_joint 7.938144e-05

Joint ci ratio: 1.992568e-01	ci left: 7.169750e-05	ci right 8.775586e-05	k: 386	n:4860000
Cons ci ratio: 5.564869e-02	ci left: 9.915716e-04	ci right 1.048532e-03	k: 4956	n:4860000
KS ci ratio: 1.165478e-01	ci left: 2.191510e-04	ci right 2.464708e-04	k: 1130	n:4860000
U2AF1   4860000 perm   9738 sec   (499 perm/sec)   p_kst 2.325103e-04   p_cons 1.019753e-03   p_joint 7.942387e-05

Joint ci ratio: 1.989999e-01	ci left: 7.174538e-05	ci right 8.779123e-05	k: 387	n:4870000
Cons ci ratio: 5.558705e-02	ci left: 9.917628e-04	ci right 1.048669e-03	k: 4967	n:4870000
KS ci ratio: 1.164964e-01	ci left: 2.189004e-04	ci right 2.461760e-04	k: 1131	n:4870000
U2AF1   4870000 perm   9777 sec   (498 perm/sec)   p_kst 2.322382e-04   p_cons 1.019918e-03   p_joint 7.946612e-05

Joint ci ratio: 1.987439e-01	ci left: 7.179307e-05	ci right 8.782644e-05	k: 388	n:4880000
Cons ci ratio: 5.554794e-02	ci left: 9.911450e-04	ci right 1.047974e-03	k: 4974	n:4880000
KS ci ratio: 1.163936e-01	ci left: 2.188497e-04	ci right 2.460933e-04	k: 1133	n:4880000
U2AF1   4880000 perm   9816 sec   (497 perm/sec)   p_kst 2.321721e-04   p_cons 1.019262e-03   p_joint 7.950820e-05

Joint ci ratio: 1.987440e-01	ci left: 7.164626e-05	ci right 8.764683e-05	k: 388	n:4890000
Cons ci ratio: 5.549777e-02	ci left: 9.909330e-04	ci right 1.047697e-03	k: 4983	n:4890000
KS ci ratio: 1.163936e-01	ci left: 2.184022e-04	ci right 2.455900e-04	k: 1133	n:4890000
U2AF1   4890000 perm   9854 sec   (496 perm/sec)   p_kst 2.316973e-04   p_cons 1.019018e-03   p_joint 7.934560e-05

Joint ci ratio: 1.984890e-01	ci left: 7.169397e-05	ci right 8.768218e-05	k: 389	n:4900000
Cons ci ratio: 5.543663e-02	ci left: 9.911245e-04	ci right 1.047835e-03	k: 4994	n:4900000
KS ci ratio: 1.163423e-01	ci left: 2.181546e-04	ci right 2.452989e-04	k: 1134	n:4900000
U2AF1   4900000 perm   9893 sec   (495 perm/sec)   p_kst 2.314286e-04   p_cons 1.019184e-03   p_joint 7.938776e-05

Joint ci ratio: 1.977299e-01	ci left: 7.212865e-05	ci right 8.814486e-05	k: 392	n:4910000
Cons ci ratio: 5.541448e-02	ci left: 9.899093e-04	ci right 1.046527e-03	k: 4998	n:4910000
KS ci ratio: 1.161379e-01	ci left: 2.185013e-04	ci right 2.456376e-04	k: 1138	n:4910000
U2AF1   4910000 perm   9932 sec   (494 perm/sec)   p_kst 2.317719e-04   p_cons 1.017923e-03   p_joint 7.983707e-05

Joint ci ratio: 1.974788e-01	ci left: 7.217525e-05	ci right 8.817900e-05	k: 393	n:4920000
Cons ci ratio: 5.537574e-02	ci left: 9.893003e-04	ci right 1.045842e-03	k: 5005	n:4920000
KS ci ratio: 1.159344e-01	ci left: 2.188466e-04	ci right 2.459749e-04	k: 1142	n:4920000
U2AF1   4920000 perm   9971 sec   (493 perm/sec)   p_kst 2.321138e-04   p_cons 1.017276e-03   p_joint 7.987805e-05

Joint ci ratio: 1.767184e-01	ci left: 9.097906e-05	ci right 1.088055e-04	k: 491	n:4930000
Cons ci ratio: 5.530396e-02	ci left: 9.898941e-04	ci right 1.046394e-03	k: 5018	n:4930000
KS ci ratio: 1.158331e-01	ci left: 2.187966e-04	ci right 2.458934e-04	k: 1144	n:4930000
U2AF1   4930000 perm   10009 sec   (493 perm/sec)   p_kst 2.320487e-04   p_cons 1.017850e-03   p_joint 9.959432e-05

Joint ci ratio: 1.767184e-01	ci left: 9.079489e-05	ci right 1.085852e-04	k: 491	n:4940000
Cons ci ratio: 5.524345e-02	ci left: 9.900862e-04	ci right 1.046534e-03	k: 5029	n:4940000
KS ci ratio: 1.157826e-01	ci left: 2.185503e-04	ci right 2.456040e-04	k: 1145	n:4940000
U2AF1   4940000 perm   10047 sec   (492 perm/sec)   p_kst 2.317814e-04   p_cons 1.018016e-03   p_joint 9.939271e-05

Joint ci ratio: 1.765391e-01	ci left: 9.080455e-05	ci right 1.085768e-04	k: 492	n:4950000
Cons ci ratio: 5.520507e-02	ci left: 9.894806e-04	ci right 1.045853e-03	k: 5036	n:4950000
KS ci ratio: 1.157321e-01	ci left: 2.183049e-04	ci right 2.453157e-04	k: 1146	n:4950000
U2AF1   4950000 perm   10087 sec   (491 perm/sec)   p_kst 2.315152e-04   p_cons 1.017374e-03   p_joint 9.939394e-05

Joint ci ratio: 1.931165e-01	ci left: 7.504481e-05	ci right 9.127410e-05	k: 411	n:4960000
Cons ci ratio: 5.515035e-02	ci left: 9.894740e-04	ci right 1.045789e-03	k: 5046	n:4960000
KS ci ratio: 1.156314e-01	ci left: 2.182563e-04	ci right 2.452360e-04	k: 1148	n:4960000
U2AF1   4960000 perm   10126 sec   (490 perm/sec)   p_kst 2.314516e-04   p_cons 1.017339e-03   p_joint 8.286290e-05

Joint ci ratio: 1.926494e-01	ci left: 7.527680e-05	ci right 9.151227e-05	k: 413	n:4970000
Cons ci ratio: 5.506855e-02	ci left: 9.904596e-04	ci right 1.046744e-03	k: 5061	n:4970000
KS ci ratio: 1.155309e-01	ci left: 2.182080e-04	ci right 2.451566e-04	k: 1150	n:4970000
U2AF1   4970000 perm   10164 sec   (489 perm/sec)   p_kst 2.313883e-04   p_cons 1.018310e-03   p_joint 8.309859e-05

Joint ci ratio: 1.926495e-01	ci left: 7.512564e-05	ci right 9.132851e-05	k: 413	n:4980000
Cons ci ratio: 5.501967e-02	ci left: 9.902531e-04	ci right 1.046474e-03	k: 5070	n:4980000
KS ci ratio: 1.155309e-01	ci left: 2.177698e-04	ci right 2.446643e-04	k: 1150	n:4980000
U2AF1   4980000 perm   10203 sec   (488 perm/sec)   p_kst 2.309237e-04   p_cons 1.018072e-03   p_joint 8.293173e-05

Joint ci ratio: 1.924172e-01	ci left: 7.516583e-05	ci right 9.135554e-05	k: 414	n:4990000
Cons ci ratio: 5.494386e-02	ci left: 9.910357e-04	ci right 1.047221e-03	k: 5084	n:4990000
KS ci ratio: 1.154808e-01	ci left: 2.175280e-04	ci right 2.443802e-04	k: 1151	n:4990000
U2AF1   4990000 perm   10240 sec   (487 perm/sec)   p_kst 2.306613e-04   p_cons 1.018838e-03   p_joint 8.296593e-05

Joint ci ratio: 1.674449e-01	ci left: 1.004234e-04	ci right 1.189637e-04	k: 547	n:5000000
Cons ci ratio: 4.092490e-02	ci left: 1.794112e-03	ci right 1.869266e-03	k: 9157	n:5000000
KS ci ratio: 1.153807e-01	ci left: 2.174814e-04	ci right 2.443030e-04	k: 1153	n:5000000
U2AF1   5000000 perm   10279 sec   (486 perm/sec)   p_kst 2.306000e-04   p_cons 1.831400e-03   p_joint 1.094000e-04

Outputting figure to mutsig2_images.part000000000185/U2AF1.6_826_5000000_0.0002306_0.0018314_0.0001094.png
                gene_name: U2AF1
               theta_stop: 0.17 
                    nperm: 5000000 
                     p_ks: 0.00023 
        ci_ks_bounds_left: 0.00022 
       ci_ks_bounds_right: 0.00024 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0018 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.00011 
     ci_joint_bounds_left: 0.00010 
    ci_joint_bounds_right: 0.00012 

Current progress: 22 percent done.
UAP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
UAP1   10000 perm   2 sec   (5587 perm/sec)   p_kst 5.691000e-01   p_cons 5.209000e-01   p_joint 6.615000e-01

Outputting figure to mutsig2_images.part000000000185/UAP1.5_1554_10000_0.5691_0.5209_0.6615.png
                gene_name: UAP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 24 percent done.
UBASH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
Cons ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
KS ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
UBASH3A   10000 perm   2 sec   (4741 perm/sec)   p_kst 3.958000e-01   p_cons 7.156000e-01   p_joint 5.498000e-01

Outputting figure to mutsig2_images.part000000000185/UBASH3A.6_2046_10000_0.3958_0.7156_0.5498.png
                gene_name: UBASH3A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 27 percent done.
UBE2O
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
Cons ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
UBE2O   10000 perm   2 sec   (5290 perm/sec)   p_kst 4.510000e-02   p_cons 1.010000e-02   p_joint 4.010000e-02

Joint ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
Cons ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
KS ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
UBE2O   20000 perm   4 sec   (4460 perm/sec)   p_kst 4.390000e-02   p_cons 1.020000e-02   p_joint 1.670000e-02

Joint ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
Cons ci ratio: 2.244287e-01	ci left: 8.936542e-03	ci right 1.122650e-02	k: 301	n:30000
KS ci ratio: 1.019858e-01	ci left: 4.453486e-02	ci right 4.935337e-02	k: 1407	n:30000
UBE2O   30000 perm   7 sec   (4338 perm/sec)   p_kst 4.690000e-02   p_cons 1.003333e-02   p_joint 1.206667e-02

Joint ci ratio: 2.062467e-01	ci left: 8.026618e-03	ci right 9.895715e-03	k: 357	n:40000
Cons ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
KS ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
UBE2O   40000 perm   9 sec   (4250 perm/sec)   p_kst 4.637500e-02   p_cons 9.950000e-03   p_joint 8.925000e-03

Joint ci ratio: 1.441215e-01	ci left: 1.352833e-02	ci right 1.564858e-02	k: 728	n:50000
Cons ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
KS ci ratio: 8.212546e-02	ci left: 4.178744e-02	ci right 4.538579e-02	k: 2178	n:50000
UBE2O   50000 perm   12 sec   (4173 perm/sec)   p_kst 4.356000e-02   p_cons 1.000000e-02   p_joint 1.456000e-02

Joint ci ratio: 1.379271e-01	ci left: 1.236644e-02	ci right 1.421441e-02	k: 796	n:60000
Cons ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
KS ci ratio: 7.455071e-02	ci left: 4.240542e-02	ci right 4.570553e-02	k: 2642	n:60000
UBE2O   60000 perm   15 sec   (4101 perm/sec)   p_kst 4.403333e-02   p_cons 1.011667e-02   p_joint 1.326667e-02

Joint ci ratio: 1.288833e-01	ci left: 1.220162e-02	ci right 1.389624e-02	k: 912	n:70000
Cons ci ratio: 1.469947e-01	ci left: 9.317433e-03	ci right 1.080931e-02	k: 703	n:70000
KS ci ratio: 6.939222e-02	ci left: 4.208502e-02	ci right 4.512439e-02	k: 3051	n:70000
UBE2O   70000 perm   17 sec   (4037 perm/sec)   p_kst 4.358571e-02   p_cons 1.004286e-02   p_joint 1.302857e-02

Joint ci ratio: 9.278326e-02	ci left: 2.081142e-02	ci right 2.284846e-02	k: 1745	n:80000
Cons ci ratio: 1.331847e-01	ci left: 9.998587e-03	ci right 1.143723e-02	k: 856	n:80000
KS ci ratio: 6.484253e-02	ci left: 4.226913e-02	ci right 4.511408e-02	k: 3494	n:80000
UBE2O   80000 perm   20 sec   (3971 perm/sec)   p_kst 4.367500e-02   p_cons 1.070000e-02   p_joint 2.181250e-02

Joint ci ratio: 1.129770e-01	ci left: 1.245373e-02	ci right 1.395567e-02	k: 1187	n:90000
Cons ci ratio: 1.265079e-01	ci left: 9.887377e-03	ci right 1.123334e-02	k: 949	n:90000
KS ci ratio: 6.034304e-02	ci left: 4.343574e-02	ci right 4.614925e-02	k: 4030	n:90000
UBE2O   90000 perm   23 sec   (3912 perm/sec)   p_kst 4.477778e-02   p_cons 1.054444e-02   p_joint 1.318889e-02

Joint ci ratio: 9.361971e-02	ci left: 1.642273e-02	ci right 1.804544e-02	k: 1722	n:100000
Cons ci ratio: 1.197614e-01	ci left: 9.964795e-03	ci right 1.124383e-02	k: 1059	n:100000
KS ci ratio: 5.729260e-02	ci left: 4.343731e-02	ci right 4.600918e-02	k: 4471	n:100000
UBE2O   100000 perm   26 sec   (3856 perm/sec)   p_kst 4.471000e-02   p_cons 1.059000e-02   p_joint 1.722000e-02

Joint ci ratio: 9.453390e-02	ci left: 1.466281e-02	ci right 1.612654e-02	k: 1692	n:110000
Cons ci ratio: 1.144363e-01	ci left: 9.950195e-03	ci right 1.116673e-02	k: 1160	n:110000
KS ci ratio: 5.457529e-02	ci left: 4.357603e-02	ci right 4.602986e-02	k: 4927	n:110000
UBE2O   110000 perm   29 sec   (3801 perm/sec)   p_kst 4.479091e-02   p_cons 1.054545e-02   p_joint 1.538182e-02

Joint ci ratio: 9.993995e-02	ci left: 1.202531e-02	ci right 1.329840e-02	k: 1518	n:120000
Cons ci ratio: 1.100727e-01	ci left: 9.882334e-03	ci right 1.104151e-02	k: 1254	n:120000
KS ci ratio: 5.228753e-02	ci left: 4.357059e-02	ci right 4.591815e-02	k: 5368	n:120000
UBE2O   120000 perm   32 sec   (3747 perm/sec)   p_kst 4.473333e-02   p_cons 1.045000e-02   p_joint 1.265000e-02

Joint ci ratio: 8.454100e-02	ci left: 1.558096e-02	ci right 1.696382e-02	k: 2114	n:130000
Cons ci ratio: 1.056596e-01	ci left: 9.923040e-03	ci right 1.103742e-02	k: 1361	n:130000
KS ci ratio: 4.995110e-02	ci left: 4.409983e-02	ci right 4.636667e-02	k: 5879	n:130000
UBE2O   130000 perm   35 sec   (3689 perm/sec)   p_kst 4.522308e-02   p_cons 1.046923e-02   p_joint 1.626154e-02

Joint ci ratio: 8.377031e-02	ci left: 1.475446e-02	ci right 1.605144e-02	k: 2155	n:140000
Cons ci ratio: 1.019134e-01	ci left: 9.923913e-03	ci right 1.099651e-02	k: 1463	n:140000
KS ci ratio: 4.819515e-02	ci left: 4.403293e-02	ci right 4.621454e-02	k: 6316	n:140000
UBE2O   140000 perm   39 sec   (3598 perm/sec)   p_kst 4.511429e-02   p_cons 1.045000e-02   p_joint 1.539286e-02

Joint ci ratio: 8.613360e-02	ci left: 1.303300e-02	ci right 1.421258e-02	k: 2042	n:150000
Cons ci ratio: 9.882676e-02	ci left: 9.866741e-03	ci right 1.089898e-02	k: 1556	n:150000
KS ci ratio: 4.663030e-02	ci left: 4.394320e-02	ci right 4.604777e-02	k: 6748	n:150000
UBE2O   150000 perm   42 sec   (3551 perm/sec)   p_kst 4.498667e-02   p_cons 1.037333e-02   p_joint 1.361333e-02

Outputting figure to mutsig2_images.part000000000185/UBE2O.6_3951_150000_0.044987_0.010373_0.013613.png
                gene_name: UBE2O
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 29 percent done.
UBE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
UBE4A   10000 perm   2 sec   (4874 perm/sec)   p_kst 6.269000e-01   p_cons 2.279000e-01   p_joint 6.456000e-01

Outputting figure to mutsig2_images.part000000000185/UBE4A.6_3298_10000_0.6269_0.2279_0.6456.png
                gene_name: UBE4A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 31 percent done.
U2AF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
Cons ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
U2AF2   10000 perm   2 sec   (5556 perm/sec)   p_kst 8.340000e-02   p_cons 9.699000e-01   p_joint 1.602000e-01

Joint ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
Cons ci ratio: 4.977775e-03	ci left: 9.662963e-01	ci right 9.711662e-01	k: 19376	n:20000
KS ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
U2AF2   20000 perm   4 sec   (5017 perm/sec)   p_kst 8.235000e-02   p_cons 9.688000e-01   p_joint 1.167000e-01

Outputting figure to mutsig2_images.part000000000185/U2AF2.5_1476_20000_0.08235_0.9688_0.1167.png
                gene_name: U2AF2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
UBA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
UBA7   10000 perm   2 sec   (5301 perm/sec)   p_kst 9.190000e-02   p_cons 9.573000e-01   p_joint 2.680000e-01

Joint ci ratio: 5.238263e-02	ci left: 2.129874e-01	ci right 2.244945e-01	k: 4374	n:20000
Cons ci ratio: 5.924605e-03	ci left: 9.534263e-01	ci right 9.591401e-01	k: 19127	n:20000
KS ci ratio: 8.681902e-02	ci left: 8.847004e-02	ci right 9.654888e-02	k: 1849	n:20000
UBA7   20000 perm   4 sec   (4710 perm/sec)   p_kst 9.245000e-02   p_cons 9.563500e-01   p_joint 2.187000e-01

Outputting figure to mutsig2_images.part000000000185/UBA7.5_3135_20000_0.09245_0.95635_0.2187.png
                gene_name: UBA7
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 36 percent done.
UBAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
Cons ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
UBAP2   10000 perm   2 sec   (5140 perm/sec)   p_kst 4.906000e-01   p_cons 2.335000e-01   p_joint 5.126000e-01

Outputting figure to mutsig2_images.part000000000185/UBAP2.5_3472_10000_0.4906_0.2335_0.5126.png
                gene_name: UBAP2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
UBE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
Cons ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
KS ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
UBE4B   10000 perm   2 sec   (4741 perm/sec)   p_kst 6.593000e-01   p_cons 6.080000e-02   p_joint 1.881000e-01

Joint ci ratio: 4.880350e-02	ci left: 2.379115e-01	ci right 2.498631e-01	k: 4877	n:20000
Cons ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
KS ci ratio: 1.994496e-02	ci left: 6.522318e-01	ci right 6.654220e-01	k: 13177	n:20000
UBE4B   20000 perm   5 sec   (4354 perm/sec)   p_kst 6.588500e-01   p_cons 6.030000e-02   p_joint 2.438500e-01

Joint ci ratio: 3.977252e-02	ci left: 2.397110e-01	ci right 2.494718e-01	k: 7337	n:30000
Cons ci ratio: 8.339218e-02	ci left: 6.573218e-02	ci right 7.148503e-02	k: 2057	n:30000
KS ci ratio: 1.635711e-02	ci left: 6.514627e-01	ci right 6.622402e-01	k: 19706	n:30000
UBE4B   30000 perm   7 sec   (4178 perm/sec)   p_kst 6.568667e-01   p_cons 6.856667e-02   p_joint 2.445667e-01

Outputting figure to mutsig2_images.part000000000185/UBE4B.5_4021_30000_0.65687_0.068567_0.24457.png
                gene_name: UBE4B
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 40 percent done.
TXNIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
Cons ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
KS ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
TXNIP   10000 perm   2 sec   (6299 perm/sec)   p_kst 1.096000e-01   p_cons 5.911000e-01   p_joint 1.463000e-01

Joint ci ratio: 5.898128e-02	ci left: 1.755374e-01	ci right 1.862555e-01	k: 3617	n:20000
Cons ci ratio: 2.302426e-02	ci left: 5.848501e-01	ci right 5.985232e-01	k: 11834	n:20000
KS ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
TXNIP   20000 perm   4 sec   (5621 perm/sec)   p_kst 1.088500e-01   p_cons 5.917000e-01   p_joint 1.808500e-01

Outputting figure to mutsig2_images.part000000000185/TXNIP.4_1208_20000_0.10885_0.5917_0.18085.png
                gene_name: TXNIP
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
TYRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
TYRP1   10000 perm   2 sec   (5825 perm/sec)   p_kst 4.361000e-01   p_cons 3.560000e-02   p_joint 1.725000e-01

Joint ci ratio: 5.842020e-02	ci left: 1.783545e-01	ci right 1.891376e-01	k: 3674	n:20000
Cons ci ratio: 1.485373e-01	ci left: 3.114563e-02	ci right 3.619113e-02	k: 672	n:20000
KS ci ratio: 3.211324e-02	ci left: 4.200310e-01	ci right 4.337903e-01	k: 8538	n:20000
TYRP1   20000 perm   4 sec   (5216 perm/sec)   p_kst 4.269000e-01   p_cons 3.360000e-02   p_joint 1.837000e-01

Joint ci ratio: 5.996054e-02	ci left: 1.209484e-01	ci right 1.284578e-01	k: 3740	n:30000
Cons ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
KS ci ratio: 2.635195e-02	ci left: 4.188645e-01	ci right 4.300834e-01	k: 12734	n:30000
TYRP1   30000 perm   6 sec   (4999 perm/sec)   p_kst 4.244667e-01   p_cons 3.623333e-02   p_joint 1.246667e-01

Joint ci ratio: 4.801100e-02	ci left: 1.394096e-01	ci right 1.462923e-01	k: 5713	n:40000
Cons ci ratio: 1.009877e-01	ci left: 3.446392e-02	ci right 3.815379e-02	k: 1451	n:40000
KS ci ratio: 2.275265e-02	ci left: 4.210971e-01	ci right 4.308136e-01	k: 17038	n:40000
TYRP1   40000 perm   8 sec   (4846 perm/sec)   p_kst 4.259500e-01   p_cons 3.627500e-02   p_joint 1.428250e-01

Joint ci ratio: 4.269342e-02	ci left: 1.411910e-01	ci right 1.473703e-01	k: 7213	n:50000
Cons ci ratio: 8.973804e-02	ci left: 3.510800e-02	ci right 3.842606e-02	k: 1837	n:50000
KS ci ratio: 2.031794e-02	ci left: 4.223990e-01	ci right 4.310895e-01	k: 21337	n:50000
TYRP1   50000 perm   11 sec   (4726 perm/sec)   p_kst 4.267400e-01   p_cons 3.674000e-02   p_joint 1.442600e-01

Outputting figure to mutsig2_images.part000000000185/TYRP1.4_1642_50000_0.42674_0.03674_0.14426.png
                gene_name: TYRP1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 44 percent done.
TYW1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
KS ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
TYW1B   10000 perm   2 sec   (5574 perm/sec)   p_kst 4.354000e-01   p_cons 3.426000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000185/TYW1B.4_2185_10000_0.4354_0.3426_0.4518.png
                gene_name: TYW1B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
UBAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
Cons ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
UBAP1   10000 perm   2 sec   (6211 perm/sec)   p_kst 6.000000e-03   p_cons 4.808000e-01   p_joint 1.780000e-02

Joint ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
Cons ci ratio: 2.895815e-02	ci left: 4.711557e-01	ci right 4.850506e-01	k: 9562	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
UBAP1   20000 perm   4 sec   (5538 perm/sec)   p_kst 5.400000e-03   p_cons 4.781000e-01   p_joint 5.600000e-03

Joint ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
Cons ci ratio: 2.372397e-02	ci left: 4.707675e-01	ci right 4.821037e-01	k: 14293	n:30000
KS ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
UBAP1   30000 perm   6 sec   (5136 perm/sec)   p_kst 5.766667e-03   p_cons 4.764333e-01   p_joint 1.380000e-02

Joint ci ratio: 1.747381e-01	ci left: 1.133853e-02	ci right 1.353310e-02	k: 496	n:40000
Cons ci ratio: 2.057812e-02	ci left: 4.707453e-01	ci right 4.805582e-01	k: 19026	n:40000
KS ci ratio: 2.461547e-01	ci left: 5.524664e-03	ci right 7.098301e-03	k: 251	n:40000
UBAP1   40000 perm   8 sec   (4977 perm/sec)   p_kst 6.275000e-03   p_cons 4.756500e-01   p_joint 1.240000e-02

Joint ci ratio: 1.198123e-01	ci left: 1.970283e-02	ci right 2.223321e-02	k: 1047	n:50000
Cons ci ratio: 1.843199e-02	ci left: 4.705545e-01	ci right 4.793285e-01	k: 23747	n:50000
KS ci ratio: 2.144204e-01	ci left: 5.927960e-03	ci right 7.370215e-03	k: 331	n:50000
UBAP1   50000 perm   10 sec   (4850 perm/sec)   p_kst 6.620000e-03   p_cons 4.749400e-01   p_joint 2.094000e-02

Joint ci ratio: 1.242564e-01	ci left: 1.530191e-02	ci right 1.734526e-02	k: 978	n:60000
Cons ci ratio: 1.684998e-02	ci left: 4.702309e-01	ci right 4.782383e-01	k: 28454	n:60000
KS ci ratio: 1.986195e-01	ci left: 5.809248e-03	ci right 7.105852e-03	k: 386	n:60000
UBAP1   60000 perm   13 sec   (4740 perm/sec)   p_kst 6.433333e-03   p_cons 4.742333e-01   p_joint 1.630000e-02

Joint ci ratio: 9.094005e-02	ci left: 2.468000e-02	ci right 2.704523e-02	k: 1809	n:70000
Cons ci ratio: 1.525981e-02	ci left: 4.815340e-01	ci right 4.889529e-01	k: 33967	n:70000
KS ci ratio: 1.846077e-01	ci left: 5.809024e-03	ci right 7.003874e-03	k: 447	n:70000
UBAP1   70000 perm   15 sec   (4642 perm/sec)   p_kst 6.385714e-03   p_cons 4.852429e-01   p_joint 2.584286e-02

Joint ci ratio: 9.091116e-02	ci left: 2.167897e-02	ci right 2.375585e-02	k: 1816	n:80000
Cons ci ratio: 1.429409e-02	ci left: 4.810813e-01	ci right 4.880199e-01	k: 38764	n:80000
KS ci ratio: 1.735397e-01	ci left: 5.787356e-03	ci right 6.898901e-03	k: 506	n:80000
UBAP1   80000 perm   18 sec   (4554 perm/sec)   p_kst 6.325000e-03   p_cons 4.845500e-01   p_joint 2.270000e-02

Joint ci ratio: 9.151807e-02	ci left: 1.906270e-02	ci right 2.090175e-02	k: 1797	n:90000
Cons ci ratio: 1.348337e-02	ci left: 4.810300e-01	ci right 4.875710e-01	k: 43587	n:90000
KS ci ratio: 1.642501e-01	ci left: 5.772172e-03	ci right 6.815589e-03	k: 565	n:90000
UBAP1   90000 perm   20 sec   (4467 perm/sec)   p_kst 6.277778e-03   p_cons 4.843000e-01   p_joint 1.996667e-02

Joint ci ratio: 8.890530e-02	ci left: 1.822149e-02	ci right 1.992657e-02	k: 1906	n:100000
Cons ci ratio: 1.278763e-02	ci left: 4.813480e-01	ci right 4.875529e-01	k: 48445	n:100000
KS ci ratio: 1.564344e-01	ci left: 5.751686e-03	ci right 6.737283e-03	k: 623	n:100000
UBAP1   100000 perm   23 sec   (4381 perm/sec)   p_kst 6.230000e-03   p_cons 4.844500e-01   p_joint 1.906000e-02

Joint ci ratio: 8.676465e-02	ci left: 1.742712e-02	ci right 1.901660e-02	k: 2003	n:110000
Cons ci ratio: 1.219066e-02	ci left: 4.815698e-01	ci right 4.874855e-01	k: 53298	n:110000
KS ci ratio: 1.477955e-01	ci left: 5.884716e-03	ci right 6.832503e-03	k: 698	n:110000
UBAP1   110000 perm   26 sec   (4304 perm/sec)   p_kst 6.345455e-03   p_cons 4.845273e-01   p_joint 1.820909e-02

Joint ci ratio: 8.499549e-02	ci left: 1.667586e-02	ci right 1.816426e-02	k: 2089	n:120000
Cons ci ratio: 1.166337e-02	ci left: 4.820519e-01	ci right 4.877155e-01	k: 58186	n:120000
KS ci ratio: 1.415544e-01	ci left: 5.900327e-03	ci right 6.807111e-03	k: 761	n:120000
UBAP1   120000 perm   28 sec   (4230 perm/sec)   p_kst 6.341667e-03   p_cons 4.848833e-01   p_joint 1.740833e-02

Joint ci ratio: 8.629988e-02	ci left: 1.494840e-02	ci right 1.630410e-02	k: 2030	n:130000
Cons ci ratio: 1.122357e-02	ci left: 4.813722e-01	ci right 4.868131e-01	k: 62932	n:130000
KS ci ratio: 1.354655e-01	ci left: 5.966277e-03	ci right 6.840575e-03	k: 831	n:130000
UBAP1   130000 perm   31 sec   (4159 perm/sec)   p_kst 6.392308e-03   p_cons 4.840923e-01   p_joint 1.561538e-02

Joint ci ratio: 8.789874e-02	ci left: 1.339107e-02	ci right 1.462918e-02	k: 1960	n:140000
Cons ci ratio: 1.081020e-02	ci left: 4.817075e-01	ci right 4.869503e-01	k: 67806	n:140000
KS ci ratio: 1.307583e-01	ci left: 5.961320e-03	ci right 6.802179e-03	k: 892	n:140000
UBAP1   140000 perm   34 sec   (4090 perm/sec)   p_kst 6.371429e-03   p_cons 4.843286e-01   p_joint 1.400000e-02

Joint ci ratio: 7.653829e-02	ci left: 1.652843e-02	ci right 1.785033e-02	k: 2577	n:150000
Cons ci ratio: 1.043909e-02	ci left: 4.820146e-01	ci right 4.870794e-01	k: 72682	n:150000
KS ci ratio: 1.296232e-01	ci left: 5.667034e-03	ci right 6.458908e-03	k: 908	n:150000
UBAP1   150000 perm   37 sec   (4026 perm/sec)   p_kst 6.053333e-03   p_cons 4.845467e-01   p_joint 1.718000e-02

Joint ci ratio: 7.413350e-02	ci left: 1.653789e-02	ci right 1.781719e-02	k: 2747	n:160000
Cons ci ratio: 1.057342e-02	ci left: 4.596422e-01	ci right 4.645342e-01	k: 73934	n:160000
KS ci ratio: 1.261369e-01	ci left: 5.621390e-03	ci right 6.384178e-03	k: 959	n:160000
UBAP1   160000 perm   40 sec   (3962 perm/sec)   p_kst 5.993750e-03   p_cons 4.620875e-01   p_joint 1.716875e-02

Joint ci ratio: 7.389874e-02	ci left: 1.568028e-02	ci right 1.688924e-02	k: 2767	n:170000
Cons ci ratio: 1.025723e-02	ci left: 4.597395e-01	ci right 4.644853e-01	k: 78559	n:170000
KS ci ratio: 1.222503e-01	ci left: 5.644100e-03	ci right 6.384663e-03	k: 1021	n:170000
UBAP1   170000 perm   44 sec   (3901 perm/sec)   p_kst 6.005882e-03   p_cons 4.621118e-01   p_joint 1.627647e-02

Joint ci ratio: 7.484416e-02	ci left: 1.444896e-02	ci right 1.557785e-02	k: 2701	n:180000
Cons ci ratio: 9.981628e-03	ci left: 4.591393e-01	ci right 4.637508e-01	k: 83060	n:180000
KS ci ratio: 1.187573e-01	ci left: 5.659216e-03	ci right 6.379056e-03	k: 1082	n:180000
UBAP1   180000 perm   47 sec   (3845 perm/sec)   p_kst 6.011111e-03   p_cons 4.614444e-01   p_joint 1.500556e-02

Joint ci ratio: 7.583367e-02	ci left: 1.334221e-02	ci right 1.439901e-02	k: 2634	n:190000
Cons ci ratio: 9.715350e-03	ci left: 4.592038e-01	ci right 4.636921e-01	k: 87675	n:190000
KS ci ratio: 1.148926e-01	ci left: 5.739470e-03	ci right 6.444149e-03	k: 1156	n:190000
UBAP1   190000 perm   50 sec   (3791 perm/sec)   p_kst 6.084211e-03   p_cons 4.614474e-01   p_joint 1.386316e-02

Joint ci ratio: 8.101702e-02	ci left: 1.110101e-02	ci right 1.204322e-02	k: 2313	n:200000
Cons ci ratio: 9.466640e-03	ci left: 4.594032e-01	ci right 4.637779e-01	k: 92318	n:200000
KS ci ratio: 1.124908e-01	ci left: 5.695380e-03	ci right 6.379057e-03	k: 1206	n:200000
UBAP1   200000 perm   54 sec   (3737 perm/sec)   p_kst 6.030000e-03   p_cons 4.615900e-01   p_joint 1.156500e-02

Joint ci ratio: 7.883017e-02	ci left: 1.117909e-02	ci right 1.210113e-02	k: 2443	n:210000
Cons ci ratio: 9.244510e-03	ci left: 4.591328e-01	ci right 4.634016e-01	k: 96866	n:210000
KS ci ratio: 1.098823e-01	ci left: 5.692680e-03	ci right 6.359161e-03	k: 1264	n:210000
UBAP1   210000 perm   57 sec   (3678 perm/sec)   p_kst 6.019048e-03   p_cons 4.612667e-01   p_joint 1.163333e-02

Joint ci ratio: 7.771761e-02	ci left: 1.098731e-02	ci right 1.188017e-02	k: 2514	n:220000
Cons ci ratio: 9.033096e-03	ci left: 4.591198e-01	ci right 4.632903e-01	k: 101465	n:220000
KS ci ratio: 1.072436e-01	ci left: 5.712513e-03	ci right 6.364241e-03	k: 1327	n:220000
UBAP1   220000 perm   61 sec   (3622 perm/sec)   p_kst 6.031818e-03   p_cons 4.612045e-01   p_joint 1.142727e-02

Joint ci ratio: 7.671063e-02	ci left: 1.079524e-02	ci right 1.166062e-02	k: 2581	n:230000
Cons ci ratio: 8.835553e-03	ci left: 4.591089e-01	ci right 4.631877e-01	k: 106064	n:230000
KS ci ratio: 1.054364e-01	ci left: 5.658815e-03	ci right 6.292863e-03	k: 1373	n:230000
UBAP1   230000 perm   64 sec   (3566 perm/sec)   p_kst 5.969565e-03   p_cons 4.611478e-01   p_joint 1.122174e-02

Joint ci ratio: 7.418549e-02	ci left: 1.107317e-02	ci right 1.193035e-02	k: 2759	n:240000
Cons ci ratio: 8.646296e-03	ci left: 4.593373e-01	ci right 4.633303e-01	k: 110720	n:240000
KS ci ratio: 1.051805e-01	ci left: 5.451399e-03	ci right 6.060631e-03	k: 1380	n:240000
UBAP1   240000 perm   68 sec   (3506 perm/sec)   p_kst 5.750000e-03   p_cons 4.613333e-01   p_joint 1.149583e-02

Joint ci ratio: 7.228079e-02	ci left: 1.120751e-02	ci right 1.205187e-02	k: 2906	n:250000
Cons ci ratio: 8.467813e-03	ci left: 4.596003e-01	ci right 4.635126e-01	k: 115389	n:250000
KS ci ratio: 1.027878e-01	ci left: 5.486586e-03	ci right 6.084959e-03	k: 1445	n:250000
UBAP1   250000 perm   72 sec   (3456 perm/sec)   p_kst 5.780000e-03   p_cons 4.615560e-01   p_joint 1.162400e-02

Joint ci ratio: 5.926892e-02	ci left: 1.605551e-02	ci right 1.703993e-02	k: 4301	n:260000
Cons ci ratio: 8.100546e-03	ci left: 4.719483e-01	ci right 4.757907e-01	k: 123206	n:260000
KS ci ratio: 1.008876e-01	ci left: 5.481713e-03	ci right 6.067848e-03	k: 1500	n:260000
UBAP1   260000 perm   76 sec   (3411 perm/sec)   p_kst 5.769231e-03   p_cons 4.738692e-01   p_joint 1.654231e-02

Joint ci ratio: 5.911309e-02	ci left: 1.555196e-02	ci right 1.650291e-02	k: 4326	n:270000
Cons ci ratio: 7.946448e-03	ci left: 4.721520e-01	ci right 4.759226e-01	k: 127990	n:270000
KS ci ratio: 9.928171e-02	ci left: 5.455622e-03	ci right 6.029140e-03	k: 1549	n:270000
UBAP1   270000 perm   80 sec   (3366 perm/sec)   p_kst 5.737037e-03   p_cons 4.740370e-01   p_joint 1.602222e-02

Outputting figure to mutsig2_images.part000000000185/UBAP1.4_1770_270000_0.005737_0.47404_0.016022.png
                gene_name: UBAP1
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0057 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0060 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 49 percent done.
UBE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
UBE2A   10000 perm   2 sec   (6150 perm/sec)   p_kst 8.367000e-01   p_cons 2.130000e-02   p_joint 2.321000e-01

Joint ci ratio: 3.075621e-02	ci left: 4.412408e-01	ci right 4.550743e-01	k: 8963	n:20000
Cons ci ratio: 1.874375e-01	ci left: 1.939152e-02	ci right 2.344929e-02	k: 427	n:20000
KS ci ratio: 1.223721e-02	ci left: 8.317058e-01	ci right 8.419961e-01	k: 16738	n:20000
UBE2A   20000 perm   4 sec   (5492 perm/sec)   p_kst 8.369000e-01   p_cons 2.135000e-02   p_joint 4.481500e-01

Joint ci ratio: 2.628375e-02	ci left: 4.201289e-01	ci right 4.313521e-01	k: 12772	n:30000
Cons ci ratio: 1.554097e-01	ci left: 1.915081e-02	ci right 2.240959e-02	k: 622	n:30000
KS ci ratio: 1.009011e-02	ci left: 8.299426e-01	ci right 8.383925e-01	k: 25026	n:30000
UBE2A   30000 perm   6 sec   (5254 perm/sec)   p_kst 8.342000e-01   p_cons 2.073333e-02   p_joint 4.257333e-01

Joint ci ratio: 2.225497e-02	ci left: 4.319316e-01	ci right 4.416776e-01	k: 17472	n:40000
Cons ci ratio: 1.327778e-01	ci left: 1.990741e-02	ci right 2.276267e-02	k: 852	n:40000
KS ci ratio: 8.783194e-03	ci left: 8.290813e-01	ci right 8.364203e-01	k: 33311	n:40000
UBE2A   40000 perm   8 sec   (5089 perm/sec)   p_kst 8.327750e-01   p_cons 2.130000e-02   p_joint 4.368000e-01

Joint ci ratio: 2.000872e-02	ci left: 4.299094e-01	ci right 4.386183e-01	k: 21713	n:50000
Cons ci ratio: 1.203412e-01	ci left: 1.952814e-02	ci right 2.204793e-02	k: 1038	n:50000
KS ci ratio: 7.786835e-03	ci left: 8.319388e-01	ci right 8.384622e-01	k: 41761	n:50000
UBE2A   50000 perm   10 sec   (4958 perm/sec)   p_kst 8.352200e-01   p_cons 2.076000e-02   p_joint 4.342600e-01

Joint ci ratio: 1.821082e-02	ci left: 4.317606e-01	ci right 4.397123e-01	k: 26144	n:60000
Cons ci ratio: 1.104822e-01	ci left: 1.941349e-02	ci right 2.169988e-02	k: 1232	n:60000
KS ci ratio: 7.102844e-03	ci left: 8.324419e-01	ci right 8.383923e-01	k: 50126	n:60000
UBE2A   60000 perm   12 sec   (4826 perm/sec)   p_kst 8.354333e-01   p_cons 2.053333e-02   p_joint 4.357333e-01

Joint ci ratio: 1.477784e-02	ci left: 4.975746e-01	ci right 5.049967e-01	k: 35090	n:70000
Cons ci ratio: 1.027434e-01	ci left: 1.932377e-02	ci right 2.143053e-02	k: 1425	n:70000
KS ci ratio: 6.600295e-03	ci left: 8.316397e-01	ci right 8.371611e-01	k: 58409	n:70000
UBE2A   70000 perm   15 sec   (4722 perm/sec)   p_kst 8.344143e-01   p_cons 2.035714e-02   p_joint 5.012857e-01

Joint ci ratio: 1.411889e-02	ci left: 4.872425e-01	ci right 4.941832e-01	k: 39257	n:80000
Cons ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
KS ci ratio: 6.196367e-03	ci left: 8.308122e-01	ci right 8.359886e-01	k: 66673	n:80000
UBE2A   80000 perm   17 sec   (4625 perm/sec)   p_kst 8.334125e-01   p_cons 2.022500e-02   p_joint 4.907125e-01

Outputting figure to mutsig2_images.part000000000185/UBE2A.4_483_80000_0.83341_0.020225_0.49071.png
                gene_name: UBE2A
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.49 

Current progress: 51 percent done.
UBE2CBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
Cons ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
KS ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
UBE2CBP   10000 perm   2 sec   (6121 perm/sec)   p_kst 4.964000e-01   p_cons 4.170000e-01   p_joint 6.357000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2CBP.4_1210_10000_0.4964_0.417_0.6357.png
                gene_name: UBE2CBP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 53 percent done.
UBE2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
Cons ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
KS ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
UBE2D3   10000 perm   2 sec   (6151 perm/sec)   p_kst 1.330000e-01   p_cons 6.436000e-01   p_joint 1.750000e-01

Joint ci ratio: 6.496643e-02	ci left: 1.489738e-01	ci right 1.590270e-01	k: 3079	n:20000
Cons ci ratio: 2.068438e-02	ci left: 6.356117e-01	ci right 6.489469e-01	k: 12846	n:20000
KS ci ratio: 7.093896e-02	ci left: 1.277315e-01	ci right 1.371756e-01	k: 2648	n:20000
UBE2D3   20000 perm   4 sec   (5555 perm/sec)   p_kst 1.324000e-01   p_cons 6.423000e-01   p_joint 1.539500e-01

Outputting figure to mutsig2_images.part000000000185/UBE2D3.4_559_20000_0.1324_0.6423_0.15395.png
                gene_name: UBE2D3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 56 percent done.
UBE2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
Cons ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
UBE2NL   10000 perm   2 sec   (6511 perm/sec)   p_kst 3.171000e-01   p_cons 6.349000e-01   p_joint 3.826000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2NL.4_466_10000_0.3171_0.6349_0.3826.png
                gene_name: UBE2NL
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 58 percent done.
TXNL4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
Cons ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
TXNL4A   10000 perm   2 sec   (6610 perm/sec)   p_kst 2.394000e-01   p_cons 7.110000e-01   p_joint 2.803000e-01

Outputting figure to mutsig2_images.part000000000185/TXNL4A.3_441_10000_0.2394_0.711_0.2803.png
                gene_name: TXNL4A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 60 percent done.
UBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
UBA2   10000 perm   2 sec   (5927 perm/sec)   p_kst 7.360000e-01   p_cons 5.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBA2.3_1991_10000_0.736_0.5651_1.png
                gene_name: UBA2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
UBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
KS ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
UBA3   10000 perm   2 sec   (6206 perm/sec)   p_kst 8.920000e-01   p_cons 4.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBA3.3_1464_10000_0.892_0.4209_1.png
                gene_name: UBA3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
UBAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
Cons ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
KS ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
UBAC1   10000 perm   2 sec   (6286 perm/sec)   p_kst 3.602000e-01   p_cons 8.690000e-01   p_joint 4.302000e-01

Outputting figure to mutsig2_images.part000000000185/UBAC1.3_1258_10000_0.3602_0.869_0.4302.png
                gene_name: UBAC1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 67 percent done.
UBD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
Cons ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
KS ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
UBD   10000 perm   1 sec   (6879 perm/sec)   p_kst 2.382000e-01   p_cons 5.561000e-01   p_joint 3.921000e-01

Outputting figure to mutsig2_images.part000000000185/UBD.3_506_10000_0.2382_0.5561_0.3921.png
                gene_name: UBD
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 69 percent done.
UBE2D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
UBE2D4   10000 perm   2 sec   (6219 perm/sec)   p_kst 2.491000e-01   p_cons 6.913000e-01   p_joint 3.394000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2D4.3_472_10000_0.2491_0.6913_0.3394.png
                gene_name: UBE2D4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 71 percent done.
UBE2J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510632e-02	ci left: 7.000883e-01	ci right 7.179898e-01	k: 7091	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
UBE2J1   10000 perm   2 sec   (6564 perm/sec)   p_kst 4.308000e-01   p_cons 7.904000e-01   p_joint 7.091000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2J1.3_989_10000_0.4308_0.7904_0.7091.png
                gene_name: UBE2J1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 73 percent done.
UBE2Q2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
Cons ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
UBE2Q2   10000 perm   2 sec   (6660 perm/sec)   p_kst 1.490000e-02   p_cons 1.600000e-02   p_joint 2.190000e-02

Joint ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
Cons ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
KS ci ratio: 2.253759e-01	ci left: 1.321953e-02	ci right 1.662363e-02	k: 297	n:20000
UBE2Q2   20000 perm   3 sec   (5895 perm/sec)   p_kst 1.485000e-02   p_cons 1.585000e-02   p_joint 1.435000e-02

Joint ci ratio: 1.457825e-01	ci left: 2.181541e-02	ci right 2.527771e-02	k: 705	n:30000
Cons ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
KS ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
UBE2Q2   30000 perm   5 sec   (5573 perm/sec)   p_kst 1.660000e-02   p_cons 1.510000e-02   p_joint 2.350000e-02

Joint ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
Cons ci ratio: 1.564608e-01	ci left: 1.424009e-02	ci right 1.668099e-02	k: 617	n:40000
KS ci ratio: 1.528578e-01	ci left: 1.493743e-02	ci right 1.743352e-02	k: 646	n:40000
UBE2Q2   40000 perm   7 sec   (5375 perm/sec)   p_kst 1.615000e-02   p_cons 1.542500e-02   p_joint 1.275000e-02

Joint ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
Cons ci ratio: 1.420592e-01	ci left: 1.393349e-02	ci right 1.608335e-02	k: 749	n:50000
KS ci ratio: 1.366132e-01	ci left: 1.509227e-02	ci right 1.732441e-02	k: 809	n:50000
UBE2Q2   50000 perm   10 sec   (5112 perm/sec)   p_kst 1.618000e-02   p_cons 1.498000e-02   p_joint 1.254000e-02

Joint ci ratio: 1.447017e-01	ci left: 1.120836e-02	ci right 1.297264e-02	k: 724	n:60000
Cons ci ratio: 1.300492e-01	ci left: 1.394578e-02	ci right 1.590155e-02	k: 894	n:60000
KS ci ratio: 1.256333e-01	ci left: 1.496268e-02	ci right 1.698453e-02	k: 957	n:60000
UBE2Q2   60000 perm   12 sec   (4996 perm/sec)   p_kst 1.595000e-02   p_cons 1.490000e-02   p_joint 1.206667e-02

Joint ci ratio: 1.364243e-01	ci left: 1.086134e-02	ci right 1.246524e-02	k: 815	n:70000
Cons ci ratio: 1.207648e-01	ci left: 1.393235e-02	ci right 1.573677e-02	k: 1037	n:70000
KS ci ratio: 1.161381e-01	ci left: 1.508344e-02	ci right 1.695699e-02	k: 1120	n:70000
UBE2Q2   70000 perm   14 sec   (4894 perm/sec)   p_kst 1.600000e-02   p_cons 1.481429e-02   p_joint 1.164286e-02

Joint ci ratio: 1.378104e-01	ci left: 9.322086e-03	ci right 1.071379e-02	k: 800	n:80000
Cons ci ratio: 1.131243e-01	ci left: 1.395033e-02	ci right 1.563513e-02	k: 1182	n:80000
KS ci ratio: 1.093395e-01	ci left: 1.494722e-02	ci right 1.668815e-02	k: 1264	n:80000
UBE2Q2   80000 perm   17 sec   (4802 perm/sec)   p_kst 1.580000e-02   p_cons 1.477500e-02   p_joint 1.000000e-02

Joint ci ratio: 1.244072e-01	ci left: 1.023188e-02	ci right 1.159991e-02	k: 981	n:90000
Cons ci ratio: 1.067718e-01	ci left: 1.396712e-02	ci right 1.555327e-02	k: 1327	n:90000
KS ci ratio: 1.021827e-01	ci left: 1.526613e-02	ci right 1.692082e-02	k: 1447	n:90000
UBE2Q2   90000 perm   19 sec   (4713 perm/sec)   p_kst 1.607778e-02   p_cons 1.474444e-02   p_joint 1.090000e-02

Joint ci ratio: 1.232771e-01	ci left: 9.392556e-03	ci right 1.063611e-02	k: 1000	n:100000
Cons ci ratio: 1.009308e-01	ci left: 1.410944e-02	ci right 1.561889e-02	k: 1485	n:100000
KS ci ratio: 9.678295e-02	ci left: 1.535827e-02	ci right 1.692998e-02	k: 1613	n:100000
UBE2Q2   100000 perm   22 sec   (4626 perm/sec)   p_kst 1.613000e-02   p_cons 1.485000e-02   p_joint 1.000000e-02

Joint ci ratio: 1.174916e-01	ci left: 9.429238e-03	ci right 1.061499e-02	k: 1101	n:110000
Cons ci ratio: 9.634149e-02	ci left: 1.411243e-02	ci right 1.554968e-02	k: 1630	n:110000
KS ci ratio: 9.263492e-02	ci left: 1.527562e-02	ci right 1.676823e-02	k: 1761	n:110000
UBE2Q2   110000 perm   24 sec   (4543 perm/sec)   p_kst 1.600909e-02   p_cons 1.481818e-02   p_joint 1.000909e-02

Joint ci ratio: 1.063259e-01	ci left: 1.060414e-02	ci right 1.180299e-02	k: 1343	n:120000
Cons ci ratio: 9.206349e-02	ci left: 1.419767e-02	ci right 1.557592e-02	k: 1785	n:120000
KS ci ratio: 8.876591e-02	ci left: 1.528132e-02	ci right 1.670888e-02	k: 1918	n:120000
UBE2Q2   120000 perm   27 sec   (4462 perm/sec)   p_kst 1.598333e-02   p_cons 1.487500e-02   p_joint 1.119167e-02

Joint ci ratio: 1.039754e-01	ci left: 1.025272e-02	ci right 1.138465e-02	k: 1405	n:130000
Cons ci ratio: 8.886842e-02	ci left: 1.409040e-02	ci right 1.540830e-02	k: 1916	n:130000
KS ci ratio: 8.519856e-02	ci left: 1.533995e-02	ci right 1.671253e-02	k: 2082	n:130000
UBE2Q2   130000 perm   30 sec   (4397 perm/sec)   p_kst 1.601538e-02   p_cons 1.473846e-02   p_joint 1.080769e-02

Joint ci ratio: 1.012515e-01	ci left: 1.005621e-02	ci right 1.113563e-02	k: 1482	n:140000
Cons ci ratio: 8.502053e-02	ci left: 1.432082e-02	ci right 1.559939e-02	k: 2093	n:140000
KS ci ratio: 8.202940e-02	ci left: 1.539119e-02	ci right 1.671468e-02	k: 2246	n:140000
UBE2Q2   140000 perm   32 sec   (4329 perm/sec)   p_kst 1.604286e-02   p_cons 1.495000e-02   p_joint 1.058571e-02

Joint ci ratio: 1.029844e-01	ci left: 9.073733e-03	ci right 1.006536e-02	k: 1434	n:150000
Cons ci ratio: 8.152327e-02	ci left: 1.456077e-02	ci right 1.580474e-02	k: 2276	n:150000
KS ci ratio: 7.920616e-02	ci left: 1.542988e-02	ci right 1.670892e-02	k: 2409	n:150000
UBE2Q2   150000 perm   35 sec   (4260 perm/sec)   p_kst 1.606000e-02   p_cons 1.517333e-02   p_joint 9.560000e-03

Joint ci ratio: 9.683821e-02	ci left: 9.646326e-03	ci right 1.063405e-02	k: 1621	n:160000
Cons ci ratio: 7.926328e-02	ci left: 1.445910e-02	ci right 1.565856e-02	k: 2408	n:160000
KS ci ratio: 7.717558e-02	ci left: 1.525595e-02	ci right 1.648669e-02	k: 2538	n:160000
UBE2Q2   160000 perm   38 sec   (4195 perm/sec)   p_kst 1.586250e-02   p_cons 1.505000e-02   p_joint 1.013125e-02

Outputting figure to mutsig2_images.part000000000185/UBE2Q2.3_1316_160000_0.015863_0.01505_0.010131.png
                gene_name: UBE2Q2
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.011 

Current progress: 76 percent done.
UBFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
Cons ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
KS ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
UBFD1   10000 perm   2 sec   (6476 perm/sec)   p_kst 5.638000e-01   p_cons 9.231000e-01   p_joint 5.738000e-01

Outputting figure to mutsig2_images.part000000000185/UBFD1.3_958_10000_0.5638_0.9231_0.5738.png
                gene_name: UBFD1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 78 percent done.
UBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
UBN1   10000 perm   2 sec   (5446 perm/sec)   p_kst 5.481000e-01   p_cons 3.227000e-01   p_joint 7.295000e-01

Outputting figure to mutsig2_images.part000000000185/UBN1.3_3473_10000_0.5481_0.3227_0.7295.png
                gene_name: UBN1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 80 percent done.
TYK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
Cons ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
KS ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
TYK2   10000 perm   2 sec   (5488 perm/sec)   p_kst 7.513000e-01   p_cons 1.303000e-01   p_joint 5.328000e-01

Joint ci ratio: 3.903156e-02	ci left: 3.286570e-01	ci right 3.417909e-01	k: 6704	n:20000
Cons ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
KS ci ratio: 1.594346e-02	ci left: 7.453488e-01	ci right 7.573780e-01	k: 15028	n:20000
TYK2   20000 perm   4 sec   (4919 perm/sec)   p_kst 7.514000e-01   p_cons 1.275500e-01   p_joint 3.352000e-01

Outputting figure to mutsig2_images.part000000000185/TYK2.2_3656_20000_0.7514_0.12755_0.3352.png
                gene_name: TYK2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 82 percent done.
TYW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
Cons ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
KS ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
TYW1   10000 perm   2 sec   (5286 perm/sec)   p_kst 5.862000e-01   p_cons 2.670000e-02   p_joint 8.633000e-01

Joint ci ratio: 1.478567e-01	ci left: 3.143485e-02	ci right 3.650181e-02	k: 678	n:20000
Cons ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
KS ci ratio: 2.325608e-02	ci left: 5.799886e-01	ci right 5.936861e-01	k: 11737	n:20000
TYW1   20000 perm   4 sec   (4597 perm/sec)   p_kst 5.868500e-01   p_cons 2.390000e-02   p_joint 3.390000e-02

Joint ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
Cons ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
KS ci ratio: 1.902871e-02	ci left: 5.802346e-01	ci right 5.914154e-01	k: 17575	n:30000
TYW1   30000 perm   7 sec   (4235 perm/sec)   p_kst 5.858333e-01   p_cons 2.353333e-02   p_joint 2.386667e-02

Joint ci ratio: 1.243924e-01	ci left: 2.271618e-02	ci right 2.575343e-02	k: 968	n:40000
Cons ci ratio: 1.253906e-01	ci left: 2.235264e-02	ci right 2.536703e-02	k: 953	n:40000
KS ci ratio: 1.650187e-02	ci left: 5.803282e-01	ci right 5.900095e-01	k: 23407	n:40000
TYW1   40000 perm   9 sec   (4246 perm/sec)   p_kst 5.851750e-01   p_cons 2.382500e-02   p_joint 2.420000e-02

Joint ci ratio: 1.116505e-01	ci left: 2.271509e-02	ci right 2.542056e-02	k: 1202	n:50000
Cons ci ratio: 1.125160e-01	ci left: 2.236495e-02	ci right 2.505074e-02	k: 1184	n:50000
KS ci ratio: 1.474811e-02	ci left: 5.812272e-01	ci right 5.898829e-01	k: 29278	n:50000
TYW1   50000 perm   12 sec   (4289 perm/sec)   p_kst 5.855600e-01   p_cons 2.368000e-02   p_joint 2.404000e-02

Joint ci ratio: 1.028611e-01	ci left: 2.241637e-02	ci right 2.486334e-02	k: 1417	n:60000
Cons ci ratio: 1.037640e-01	ci left: 2.202648e-02	ci right 2.445327e-02	k: 1393	n:60000
KS ci ratio: 1.342973e-02	ci left: 5.828142e-01	ci right 5.907108e-01	k: 35206	n:60000
TYW1   60000 perm   14 sec   (4284 perm/sec)   p_kst 5.867667e-01   p_cons 2.321667e-02   p_joint 2.361667e-02

Joint ci ratio: 9.568609e-02	ci left: 2.229278e-02	ci right 2.454696e-02	k: 1638	n:70000
Cons ci ratio: 9.647253e-02	ci left: 2.193008e-02	ci right 2.416684e-02	k: 1612	n:70000
KS ci ratio: 1.244918e-02	ci left: 5.824979e-01	ci right 5.898092e-01	k: 41031	n:70000
TYW1   70000 perm   16 sec   (4262 perm/sec)   p_kst 5.861571e-01   p_cons 2.302857e-02   p_joint 2.340000e-02

Outputting figure to mutsig2_images.part000000000185/TYW1.2_2263_70000_0.58616_0.023029_0.0234.png
                gene_name: TYW1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.025 

Current progress: 84 percent done.
TYW3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
TYW3   10000 perm   1 sec   (6740 perm/sec)   p_kst 9.737000e-01   p_cons 3.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TYW3.2_804_10000_0.9737_0.3334_1.png
                gene_name: TYW3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
U2AF1L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
Cons ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
KS ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
U2AF1L4   10000 perm   1 sec   (7045 perm/sec)   p_kst 1.548000e-01   p_cons 3.031000e-01   p_joint 1.633000e-01

Outputting figure to mutsig2_images.part000000000185/U2AF1L4.2_691_10000_0.1548_0.3031_0.1633.png
                gene_name: U2AF1L4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 89 percent done.
UBASH3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
UBASH3B   10000 perm   2 sec   (6143 perm/sec)   p_kst 1.969000e-01   p_cons 8.451000e-01   p_joint 7.419000e-01

Outputting figure to mutsig2_images.part000000000185/UBASH3B.2_2006_10000_0.1969_0.8451_0.7419.png
                gene_name: UBASH3B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 91 percent done.
UBE2J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
UBE2J2   10000 perm   1 sec   (6863 perm/sec)   p_kst 2.750000e-02   p_cons 6.946000e-01   p_joint 2.372000e-01

Joint ci ratio: 2.147198e-02	ci left: 6.181976e-01	ci right 6.316661e-01	k: 12499	n:20000
Cons ci ratio: 1.854826e-02	ci left: 6.842419e-01	ci right 6.971026e-01	k: 13814	n:20000
KS ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
UBE2J2   20000 perm   3 sec   (5969 perm/sec)   p_kst 2.810000e-02   p_cons 6.907000e-01   p_joint 6.249500e-01

Joint ci ratio: 1.760633e-02	ci left: 6.174541e-01	ci right 6.284554e-01	k: 18689	n:30000
Cons ci ratio: 1.522158e-02	ci left: 6.832583e-01	ci right 6.937718e-01	k: 20656	n:30000
KS ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
UBE2J2   30000 perm   6 sec   (4945 perm/sec)   p_kst 2.723333e-02   p_cons 6.885333e-01   p_joint 6.229667e-01

Joint ci ratio: 9.738042e-03	ci left: 7.980857e-01	ci right 8.059204e-01	k: 32081	n:40000
Cons ci ratio: 1.318490e-02	ci left: 6.838854e-01	ci right 6.929872e-01	k: 27538	n:40000
KS ci ratio: 1.172137e-01	ci left: 2.560351e-02	ci right 2.881562e-02	k: 1087	n:40000
UBE2J2   40000 perm   8 sec   (4987 perm/sec)   p_kst 2.717500e-02   p_cons 6.884500e-01   p_joint 8.020250e-01

Joint ci ratio: 8.723800e-03	ci left: 7.979965e-01	ci right 8.050085e-01	k: 40076	n:50000
Cons ci ratio: 1.182845e-02	ci left: 6.830752e-01	ci right 6.912230e-01	k: 34358	n:50000
KS ci ratio: 1.054789e-01	ci left: 2.546041e-02	ci right 2.831488e-02	k: 1343	n:50000
UBE2J2   50000 perm   10 sec   (4973 perm/sec)   p_kst 2.686000e-02   p_cons 6.871600e-01   p_joint 8.015200e-01

Joint ci ratio: 7.957519e-03	ci left: 7.985538e-01	ci right 8.049503e-01	k: 48106	n:60000
Cons ci ratio: 1.077134e-02	ci left: 6.844928e-01	ci right 6.919223e-01	k: 41293	n:60000
KS ci ratio: 9.721565e-02	ci left: 2.509925e-02	ci right 2.768017e-02	k: 1582	n:60000
UBE2J2   60000 perm   12 sec   (4938 perm/sec)   p_kst 2.636667e-02   p_cons 6.882167e-01   p_joint 8.017667e-01

Outputting figure to mutsig2_images.part000000000185/UBE2J2.2_856_60000_0.026367_0.68822_0.80177.png
                gene_name: UBE2J2
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.80 

Current progress: 93 percent done.
UBE2R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
KS ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
UBE2R2   10000 perm   3 sec   (3696 perm/sec)   p_kst 6.262000e-01   p_cons 8.384000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2R2.2_737_10000_0.6262_0.8384_1.png
                gene_name: UBE2R2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
UBE2T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
KS ci ratio: 1.146988e-02	ci left: 9.157457e-01	ci right 9.264074e-01	k: 9212	n:10000
UBE2T   10000 perm   2 sec   (5786 perm/sec)   p_kst 9.212000e-01   p_cons 8.503000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2T.2_618_10000_0.9212_0.8503_1.png
                gene_name: UBE2T
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
UBIAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 7.308596e-02	ci left: 2.151691e-01	ci right 2.315924e-01	k: 2233	n:10000
KS ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
UBIAD1   10000 perm   2 sec   (5533 perm/sec)   p_kst 6.523000e-01   p_cons 2.233000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000185/UBIAD1.2_1025_10000_0.6523_0.2233_0.6978.png
                gene_name: UBIAD1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000185
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 185 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4422667: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000186> was used as the working directory.
Started at Wed Oct 24 18:10:27 2012
Results reported at Wed Oct 24 19:30:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000186.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000186.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 186  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000186.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4909.50 sec.
    Max Memory :      5244 MB
    Max Swap   :      7721 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
186
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 186
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 186: processing genes 16738 - 16827
Calculating significance of each gene.
Using projection method.
16738	UBN2	1.767947e-01
16739	UBOX5	1
16740	UBP1	8.773552e-01
16741	UBQLN1	6.597522e-01
16742	UBQLN2	2.409557e-01
16743	UBQLN3	5.065868e-02
16744	UBQLN4	7.470235e-01
16745	UBQLNL	8.172665e-02
16746	UBR1	9.424934e-01
16747	UBR2	9.852554e-01
16748	UBR3	7.668355e-01
16749	UBR4	9.977104e-01
16750	UBR5	9.999997e-01
16751	UBR7	1.395372e-01
16752	UBTD1	1
16753	UBTD2	6.105607e-01
16754	UBTF	8.233018e-01
16755	UBTFL1	1.283617e-02
16756	UBXN1	6.013703e-01
16757	UBXN10	1.433118e-01
In gene UBXN11 the following bins exceed PROBCAP:
    LUAD-17-Z004-TP	categ 6	N = 1560    n = 1	mu =   2.01e-07
16758	UBXN11	6.807120e-01
16759	UBXN2A	3.783594e-01
16760	UBXN2B	2.916907e-01
16761	UBXN4	8.989018e-01
16762	UBXN6	1
16763	UBXN7	5.563309e-01
16764	UBXN8	1
16765	UCHL1	4.179159e-01
16766	UCHL3	1
16767	UCHL5	3.526591e-01
16768	UCK1	1
16769	UCK2	7.047507e-01
16770	UCKL1	1
16771	UCMA	9.313557e-02
16772	UCN	1
16773	UCN2	1
16774	UCN3	1
16775	UCP1	4.781671e-01
16776	UCP2	1
16777	UCP3	9.180665e-01
16778	UEVLD	1
16779	UFC1	1
16780	UFD1L	7.023145e-01
16781	UFM1	1
16782	UFSP1	1
16783	UFSP2	1
16784	UGCG	1
16785	UGDH	3.129442e-01
16786	UGGT1	7.744701e-01
16787	UGGT2	6.405151e-01
16788	UGP2	9.474718e-01
16789	UGT1A1	8.130098e-01
16790	UGT1A10	1
16791	UGT1A3	5.831064e-01
16792	UGT1A4	1
16793	UGT1A5	9.640563e-01
16794	UGT1A6	3.874901e-01
16795	UGT1A7	9.369558e-01
16796	UGT1A8	1
16797	UGT1A9	4.638512e-01
16798	UGT2A1	1
16799	UGT2A2	1
16800	UGT2A3	5.454334e-01
16801	UGT2B10	4.218988e-04
16802	UGT2B11	8.025975e-02
16803	UGT2B15	9.876807e-01
16804	UGT2B17	1
16805	UGT2B28	1.327588e-01
16806	UGT2B4	6.161864e-01
16807	UGT2B7	8.480046e-01
16808	UGT3A1	2.735522e-02
16809	UGT3A2	1.461961e-01
16810	UGT8	9.042374e-01
16811	UHMK1	8.624231e-01
16812	UHRF1	9.803337e-01
16813	UHRF1BP1	1
16814	UHRF1BP1L	4.984599e-01
16815	UHRF2	7.107078e-01
16816	UIMC1	9.361707e-01
16817	ULBP1	7.505995e-01
16818	ULBP2	6.062128e-01
16819	ULBP3	6.400639e-01
16820	ULK1	9.401414e-01
16821	ULK2	1
16822	ULK3	6.446965e-01
16823	ULK4	9.939929e-01
16824	UMOD	1
16825	UMODL1	8.797809e-01
16826	UMPS	1
16827	UNC119	7.717179e-01
Done

Running MutSig 2:
Scatter job 186: processing genes 16738 - 16827
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UBR4
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
Cons ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
UBR4   10000 perm   4 sec   (2531 perm/sec)   p_kst 1.597000e-01   p_cons 9.141000e-01   p_joint 3.081000e-01

Outputting figure to mutsig2_images.part000000000186/UBR4.22_15976_10000_0.1597_0.9141_0.3081.png
                gene_name: UBR4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 2 percent done.
UGT2B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
UGT2B10   10000 perm   2 sec   (4471 perm/sec)   p_kst 2.419000e-01   p_cons 3.360000e-02   p_joint 6.370000e-02

Joint ci ratio: 9.409227e-02	ci left: 7.608071e-02	ci right 8.364197e-02	k: 1596	n:20000
Cons ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
KS ci ratio: 4.890294e-02	ci left: 2.371678e-01	ci right 2.491070e-01	k: 4862	n:20000
UGT2B10   20000 perm   5 sec   (4074 perm/sec)   p_kst 2.431000e-01   p_cons 3.195000e-02   p_joint 7.980000e-02

Joint ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
Cons ci ratio: 1.204502e-01	ci left: 3.204252e-02	ci right 3.618168e-02	k: 1022	n:30000
KS ci ratio: 4.000710e-02	ci left: 2.375592e-01	ci right 2.472907e-01	k: 7272	n:30000
UGT2B10   30000 perm   8 sec   (3926 perm/sec)   p_kst 2.424000e-01   p_cons 3.406667e-02   p_joint 6.520000e-02

Joint ci ratio: 7.864699e-02	ci left: 5.617065e-02	ci right 6.079370e-02	k: 2338	n:40000
Cons ci ratio: 1.045915e-01	ci left: 3.214791e-02	ci right 3.572017e-02	k: 1356	n:40000
KS ci ratio: 3.496936e-02	ci left: 2.348521e-01	ci right 2.432359e-01	k: 9561	n:40000
UGT2B10   40000 perm   10 sec   (3828 perm/sec)   p_kst 2.390250e-01   p_cons 3.390000e-02   p_joint 5.845000e-02

Joint ci ratio: 6.905819e-02	ci left: 5.844551e-02	ci right 6.264569e-02	k: 3026	n:50000
Cons ci ratio: 9.378606e-02	ci left: 3.217447e-02	ci right 3.535995e-02	k: 1687	n:50000
KS ci ratio: 3.141142e-02	ci left: 2.337554e-01	ci right 2.412351e-01	k: 11874	n:50000
UGT2B10   50000 perm   13 sec   (3749 perm/sec)   p_kst 2.374800e-01   p_cons 3.374000e-02   p_joint 6.052000e-02

Outputting figure to mutsig2_images.part000000000186/UGT2B10.19_3196_50000_0.23748_0.03374_0.06052.png
                gene_name: UGT2B10
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 3 percent done.
UBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
UBR2   10000 perm   2 sec   (4005 perm/sec)   p_kst 6.190000e-02   p_cons 2.847000e-01   p_joint 9.240000e-02

Joint ci ratio: 8.416306e-02	ci left: 9.371693e-02	ci right 1.020004e-01	k: 1956	n:20000
Cons ci ratio: 4.232557e-02	ci left: 2.937528e-01	ci right 3.065053e-01	k: 6002	n:20000
KS ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
UBR2   20000 perm   5 sec   (3671 perm/sec)   p_kst 5.875000e-02   p_cons 3.001000e-01   p_joint 9.780000e-02

Joint ci ratio: 7.085977e-02	ci left: 8.927715e-02	ci right 9.586866e-02	k: 2776	n:30000
Cons ci ratio: 3.459852e-02	ci left: 2.944525e-01	ci right 3.048530e-01	k: 8989	n:30000
KS ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
UBR2   30000 perm   8 sec   (3545 perm/sec)   p_kst 5.893333e-02   p_cons 2.996333e-01   p_joint 9.253333e-02

Outputting figure to mutsig2_images.part000000000186/UBR2.14_5602_30000_0.058933_0.29963_0.092533.png
                gene_name: UBR2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 5 percent done.
UGT2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
Cons ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
KS ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
UGT2B4   10000 perm   2 sec   (5129 perm/sec)   p_kst 8.437000e-01   p_cons 5.704000e-01   p_joint 9.304000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B4.13_1611_10000_0.8437_0.5704_0.9304.png
                gene_name: UGT2B4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 7 percent done.
UBR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
UBR5   10000 perm   3 sec   (3536 perm/sec)   p_kst 8.542000e-01   p_cons 2.626000e-01   p_joint 6.530000e-01

Outputting figure to mutsig2_images.part000000000186/UBR5.12_8636_10000_0.8542_0.2626_0.653.png
                gene_name: UBR5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 9 percent done.
UBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
Cons ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
UBN2   10000 perm   2 sec   (4772 perm/sec)   p_kst 1.730000e-01   p_cons 2.556000e-01   p_joint 1.354000e-01

Outputting figure to mutsig2_images.part000000000186/UBN2.11_4116_10000_0.173_0.2556_0.1354.png
                gene_name: UBN2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 10 percent done.
UGT2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
UGT2B11   10000 perm   2 sec   (5343 perm/sec)   p_kst 4.819000e-01   p_cons 6.770000e-02   p_joint 2.322000e-01

Joint ci ratio: 5.920113e-02	ci left: 1.744503e-01	ci right 1.851430e-01	k: 3595	n:20000
Cons ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
KS ci ratio: 2.839833e-02	ci left: 4.808997e-01	ci right 4.948038e-01	k: 9757	n:20000
UGT2B11   20000 perm   4 sec   (4828 perm/sec)   p_kst 4.878500e-01   p_cons 6.095000e-02   p_joint 1.797500e-01

Joint ci ratio: 4.405548e-02	ci left: 2.041793e-01	ci right 2.134105e-01	k: 6263	n:30000
Cons ci ratio: 8.363240e-02	ci left: 6.537265e-02	ci right 7.111131e-02	k: 2046	n:30000
KS ci ratio: 2.307743e-02	ci left: 4.845610e-01	ci right 4.959076e-01	k: 14707	n:30000
UGT2B11   30000 perm   6 sec   (4630 perm/sec)   p_kst 4.902333e-01   p_cons 6.820000e-02   p_joint 2.087667e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B11.11_1614_30000_0.49023_0.0682_0.20877.png
                gene_name: UGT2B11
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
UGT3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
KS ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
UGT3A1   10000 perm   2 sec   (4745 perm/sec)   p_kst 8.409000e-01   p_cons 9.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT3A1.11_1682_10000_0.8409_0.9843_1.png
                gene_name: UGT3A1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
UMODL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
UMODL1   10000 perm   2 sec   (4328 perm/sec)   p_kst 2.070000e-02   p_cons 2.170000e-02   p_joint 1.280000e-02

Joint ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
UMODL1   20000 perm   5 sec   (3979 perm/sec)   p_kst 1.975000e-02   p_cons 1.990000e-02   p_joint 6.050000e-03

Joint ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
Cons ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
KS ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
UMODL1   30000 perm   8 sec   (3809 perm/sec)   p_kst 1.926667e-02   p_cons 2.306667e-02   p_joint 4.166667e-03

Joint ci ratio: 3.500628e-01	ci left: 2.579060e-03	ci right 3.695006e-03	k: 124	n:40000
Cons ci ratio: 1.392550e-01	ci left: 1.807082e-02	ci right 2.079957e-02	k: 776	n:40000
KS ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
UMODL1   40000 perm   11 sec   (3711 perm/sec)   p_kst 1.952500e-02   p_cons 1.940000e-02   p_joint 3.100000e-03

Joint ci ratio: 3.394514e-01	ci left: 2.209321e-03	ci right 3.129935e-03	k: 132	n:50000
Cons ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
KS ci ratio: 1.230916e-01	ci left: 1.865502e-02	ci right 2.112117e-02	k: 993	n:50000
UMODL1   50000 perm   14 sec   (3635 perm/sec)   p_kst 1.986000e-02   p_cons 1.948000e-02   p_joint 2.640000e-03

Joint ci ratio: 3.165063e-01	ci left: 2.147007e-03	ci right 2.968956e-03	k: 152	n:60000
Cons ci ratio: 1.107576e-01	ci left: 1.931621e-02	ci right 2.159718e-02	k: 1226	n:60000
KS ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
UMODL1   60000 perm   17 sec   (3568 perm/sec)   p_kst 1.960000e-02   p_cons 2.043333e-02   p_joint 2.533333e-03

Joint ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
Cons ci ratio: 9.671832e-02	ci left: 2.181850e-02	ci right 2.404986e-02	k: 1604	n:70000
KS ci ratio: 1.056145e-01	ci left: 1.827974e-02	ci right 2.033181e-02	k: 1350	n:70000
UMODL1   70000 perm   20 sec   (3515 perm/sec)   p_kst 1.928571e-02   p_cons 2.291429e-02   p_joint 1.485714e-03

Joint ci ratio: 2.038723e-01	ci left: 4.131025e-03	ci right 5.080451e-03	k: 367	n:80000
Cons ci ratio: 9.022756e-02	ci left: 2.200899e-02	ci right 2.410080e-02	k: 1843	n:80000
KS ci ratio: 9.863067e-02	ci left: 1.840666e-02	ci right 2.032842e-02	k: 1548	n:80000
UMODL1   80000 perm   23 sec   (3462 perm/sec)   p_kst 1.935000e-02   p_cons 2.303750e-02   p_joint 4.587500e-03

Joint ci ratio: 1.960558e-01	ci left: 3.988641e-03	ci right 4.865995e-03	k: 397	n:90000
Cons ci ratio: 8.511993e-02	ci left: 2.204137e-02	ci right 2.401176e-02	k: 2071	n:90000
KS ci ratio: 9.276290e-02	ci left: 1.855229e-02	ci right 2.036776e-02	k: 1750	n:90000
UMODL1   90000 perm   27 sec   (3387 perm/sec)   p_kst 1.944444e-02   p_cons 2.301111e-02   p_joint 4.411111e-03

Joint ci ratio: 1.871079e-01	ci left: 3.961072e-03	ci right 4.788081e-03	k: 436	n:100000
Cons ci ratio: 8.848054e-02	ci left: 1.839757e-02	ci right 2.011048e-02	k: 1924	n:100000
KS ci ratio: 8.792332e-02	ci left: 1.863237e-02	ci right 2.035566e-02	k: 1948	n:100000
UMODL1   100000 perm   30 sec   (3340 perm/sec)   p_kst 1.948000e-02   p_cons 1.924000e-02   p_joint 4.360000e-03

Joint ci ratio: 1.544995e-01	ci left: 5.368517e-03	ci right 6.276018e-03	k: 639	n:110000
Cons ci ratio: 8.457698e-02	ci left: 1.834379e-02	ci right 1.997261e-02	k: 2106	n:110000
KS ci ratio: 8.384958e-02	ci left: 1.866430e-02	ci right 2.030663e-02	k: 2142	n:110000
UMODL1   110000 perm   33 sec   (3296 perm/sec)   p_kst 1.947273e-02   p_cons 1.914545e-02   p_joint 5.809091e-03

Joint ci ratio: 1.520492e-01	ci left: 5.089372e-03	ci right 5.934795e-03	k: 660	n:120000
Cons ci ratio: 8.109412e-02	ci left: 1.832487e-02	ci right 1.988183e-02	k: 2291	n:120000
KS ci ratio: 8.011958e-02	ci left: 1.877413e-02	ci right 2.034921e-02	k: 2346	n:120000
UMODL1   120000 perm   37 sec   (3252 perm/sec)   p_kst 1.955000e-02   p_cons 1.909167e-02   p_joint 5.500000e-03

Joint ci ratio: 1.525462e-01	ci left: 4.668207e-03	ci right 5.446430e-03	k: 656	n:130000
Cons ci ratio: 7.818604e-02	ci left: 1.822703e-02	ci right 1.971761e-02	k: 2465	n:130000
KS ci ratio: 7.720255e-02	ci left: 1.869486e-02	ci right 2.020361e-02	k: 2527	n:130000
UMODL1   130000 perm   40 sec   (3211 perm/sec)   p_kst 1.943846e-02   p_cons 1.896154e-02   p_joint 5.046154e-03

Joint ci ratio: 1.521094e-01	ci left: 4.362193e-03	ci right 5.087126e-03	k: 660	n:140000
Cons ci ratio: 7.519337e-02	ci left: 1.832631e-02	ci right 1.976514e-02	k: 2665	n:140000
KS ci ratio: 7.430332e-02	ci left: 1.876806e-02	ci right 2.022337e-02	k: 2728	n:140000
UMODL1   140000 perm   44 sec   (3181 perm/sec)   p_kst 1.948571e-02   p_cons 1.903571e-02   p_joint 4.714286e-03

Joint ci ratio: 1.528318e-01	ci left: 4.032853e-03	ci right 4.706526e-03	k: 654	n:150000
Cons ci ratio: 7.290994e-02	ci left: 1.821687e-02	ci right 1.960182e-02	k: 2835	n:150000
KS ci ratio: 7.211061e-02	ci left: 1.862284e-02	ci right 2.002249e-02	k: 2897	n:150000
UMODL1   150000 perm   48 sec   (3150 perm/sec)   p_kst 1.931333e-02   p_cons 1.890000e-02   p_joint 4.360000e-03

Joint ci ratio: 1.578940e-01	ci left: 3.534437e-03	ci right 4.146258e-03	k: 613	n:160000
Cons ci ratio: 7.031178e-02	ci left: 1.838578e-02	ci right 1.973173e-02	k: 3048	n:160000
KS ci ratio: 6.954829e-02	ci left: 1.879120e-02	ci right 2.015129e-02	k: 3114	n:160000
UMODL1   160000 perm   51 sec   (3119 perm/sec)   p_kst 1.946250e-02   p_cons 1.905000e-02   p_joint 3.831250e-03

Joint ci ratio: 1.552692e-01	ci left: 3.445206e-03	ci right 4.030742e-03	k: 634	n:170000
Cons ci ratio: 6.819704e-02	ci left: 1.841412e-02	ci right 1.972000e-02	k: 3240	n:170000
KS ci ratio: 6.767734e-02	ci left: 1.869755e-02	ci right 2.001303e-02	k: 3289	n:170000
UMODL1   170000 perm   55 sec   (3088 perm/sec)   p_kst 1.934706e-02   p_cons 1.905882e-02   p_joint 3.729412e-03

Joint ci ratio: 1.513872e-01	ci left: 3.430103e-03	ci right 3.997177e-03	k: 667	n:180000
Cons ci ratio: 6.645001e-02	ci left: 1.833602e-02	ci right 1.960176e-02	k: 3413	n:180000
KS ci ratio: 6.582385e-02	ci left: 1.868581e-02	ci right 1.996307e-02	k: 3477	n:180000
UMODL1   180000 perm   59 sec   (3049 perm/sec)   p_kst 1.931667e-02   p_cons 1.896111e-02   p_joint 3.705556e-03

Joint ci ratio: 1.282959e-01	ci left: 4.575676e-03	ci right 5.207997e-03	k: 928	n:190000
Cons ci ratio: 6.470210e-02	ci left: 1.833904e-02	ci right 1.957044e-02	k: 3600	n:190000
KS ci ratio: 6.389297e-02	ci left: 1.880525e-02	ci right 2.005158e-02	k: 3690	n:190000
UMODL1   190000 perm   63 sec   (3018 perm/sec)   p_kst 1.942105e-02   p_cons 1.894737e-02   p_joint 4.884211e-03

Joint ci ratio: 1.245933e-01	ci left: 4.618043e-03	ci right 5.236441e-03	k: 984	n:200000
Cons ci ratio: 6.305132e-02	ci left: 1.836184e-02	ci right 1.956216e-02	k: 3791	n:200000
KS ci ratio: 6.219574e-02	ci left: 1.886893e-02	ci right 2.008506e-02	k: 3894	n:200000
UMODL1   200000 perm   67 sec   (2988 perm/sec)   p_kst 1.947000e-02   p_cons 1.895500e-02   p_joint 4.920000e-03

Joint ci ratio: 1.493121e-01	ci left: 3.027113e-03	ci right 3.520088e-03	k: 686	n:210000
Cons ci ratio: 5.771461e-02	ci left: 2.087449e-02	ci right 2.211972e-02	k: 4513	n:210000
KS ci ratio: 6.063449e-02	ci left: 1.892224e-02	ci right 2.011012e-02	k: 4097	n:210000
UMODL1   210000 perm   71 sec   (2959 perm/sec)   p_kst 1.950952e-02   p_cons 2.149048e-02   p_joint 3.266667e-03

Joint ci ratio: 1.475037e-01	ci left: 2.963913e-03	ci right 3.440234e-03	k: 703	n:220000
Cons ci ratio: 5.646063e-02	ci left: 2.083519e-02	ci right 2.205019e-02	k: 4716	n:220000
KS ci ratio: 5.917818e-02	ci left: 1.897554e-02	ci right 2.013717e-02	k: 4301	n:220000
UMODL1   220000 perm   75 sec   (2930 perm/sec)   p_kst 1.955000e-02   p_cons 2.143636e-02   p_joint 3.195455e-03

Joint ci ratio: 1.504356e-01	ci left: 2.722006e-03	ci right 3.168927e-03	k: 676	n:230000
Cons ci ratio: 5.523338e-02	ci left: 2.083818e-02	ci right 2.202610e-02	k: 4928	n:230000
KS ci ratio: 5.780238e-02	ci left: 1.903737e-02	ci right 2.017478e-02	k: 4508	n:230000
UMODL1   230000 perm   79 sec   (2901 perm/sec)   p_kst 1.960000e-02   p_cons 2.142609e-02   p_joint 2.939130e-03

Joint ci ratio: 1.518000e-01	ci left: 2.560463e-03	ci right 2.985020e-03	k: 664	n:240000
Cons ci ratio: 5.393826e-02	ci left: 2.095220e-02	ci right 2.211773e-02	k: 5167	n:240000
KS ci ratio: 5.657336e-02	ci left: 1.905735e-02	ci right 2.017096e-02	k: 4706	n:240000
UMODL1   240000 perm   84 sec   (2873 perm/sec)   p_kst 1.960833e-02   p_cons 2.152917e-02   p_joint 2.766667e-03

Joint ci ratio: 1.480603e-01	ci left: 2.588946e-03	ci right 3.006714e-03	k: 698	n:250000
Cons ci ratio: 5.282009e-02	ci left: 2.098632e-02	ci right 2.212881e-02	k: 5388	n:250000
KS ci ratio: 5.546570e-02	ci left: 1.904441e-02	ci right 2.013477e-02	k: 4896	n:250000
UMODL1   250000 perm   88 sec   (2845 perm/sec)   p_kst 1.958400e-02   p_cons 2.155200e-02   p_joint 2.792000e-03

Joint ci ratio: 1.550035e-01	ci left: 2.263617e-03	ci right 2.647608e-03	k: 637	n:260000
Cons ci ratio: 5.185852e-02	ci left: 2.094589e-02	ci right 2.206481e-02	k: 5590	n:260000
KS ci ratio: 5.431728e-02	ci left: 1.910476e-02	ci right 2.017522e-02	k: 5105	n:260000
UMODL1   260000 perm   92 sec   (2818 perm/sec)   p_kst 1.963462e-02   p_cons 2.150000e-02   p_joint 2.450000e-03

Joint ci ratio: 1.523989e-01	ci left: 2.258126e-03	ci right 2.634162e-03	k: 659	n:270000
Cons ci ratio: 5.093413e-02	ci left: 2.091961e-02	ci right 2.201662e-02	k: 5795	n:270000
KS ci ratio: 5.312023e-02	ci left: 1.924493e-02	ci right 2.029875e-02	k: 5337	n:270000
UMODL1   270000 perm   97 sec   (2782 perm/sec)   p_kst 1.976667e-02   p_cons 2.146296e-02   p_joint 2.440741e-03

Joint ci ratio: 1.570027e-01	ci left: 2.047000e-03	ci right 2.399145e-03	k: 621	n:280000
Cons ci ratio: 5.007454e-02	ci left: 2.088127e-02	ci right 2.195724e-02	k: 5996	n:280000
KS ci ratio: 5.208966e-02	ci left: 1.930833e-02	ci right 2.034450e-02	k: 5550	n:280000
UMODL1   280000 perm   102 sec   (2754 perm/sec)   p_kst 1.982143e-02   p_cons 2.141429e-02   p_joint 2.217857e-03

Joint ci ratio: 1.541778e-01	ci left: 2.052636e-03	ci right 2.398811e-03	k: 644	n:290000
Cons ci ratio: 4.918007e-02	ci left: 2.091044e-02	ci right 2.196812e-02	k: 6216	n:290000
KS ci ratio: 5.120754e-02	ci left: 1.929945e-02	ci right 2.031708e-02	k: 5743	n:290000
UMODL1   290000 perm   106 sec   (2726 perm/sec)   p_kst 1.980345e-02   p_cons 2.143448e-02   p_joint 2.220690e-03

Joint ci ratio: 1.527660e-01	ci left: 2.022677e-03	ci right 2.360388e-03	k: 656	n:300000
Cons ci ratio: 4.833571e-02	ci left: 2.093453e-02	ci right 2.197475e-02	k: 6435	n:300000
KS ci ratio: 5.037744e-02	ci left: 1.928471e-02	ci right 2.028460e-02	k: 5934	n:300000
UMODL1   300000 perm   111 sec   (2699 perm/sec)   p_kst 1.978000e-02   p_cons 2.145000e-02   p_joint 2.186667e-03

Joint ci ratio: 1.498291e-01	ci left: 2.038126e-03	ci right 2.371289e-03	k: 682	n:310000
Cons ci ratio: 4.750424e-02	ci left: 2.098272e-02	ci right 2.200690e-02	k: 6662	n:310000
KS ci ratio: 4.966091e-02	ci left: 1.921369e-02	ci right 2.019532e-02	k: 6107	n:310000
UMODL1   310000 perm   116 sec   (2668 perm/sec)   p_kst 1.970000e-02   p_cons 2.149032e-02   p_joint 2.200000e-03

Joint ci ratio: 1.488546e-01	ci left: 2.001506e-03	ci right 2.326365e-03	k: 691	n:320000
Cons ci ratio: 4.675934e-02	ci left: 2.098787e-02	ci right 2.199582e-02	k: 6876	n:320000
KS ci ratio: 4.892248e-02	ci left: 1.918734e-02	ci right 2.015264e-02	k: 6293	n:320000
UMODL1   320000 perm   121 sec   (2642 perm/sec)   p_kst 1.966562e-02   p_cons 2.148750e-02   p_joint 2.159375e-03

Joint ci ratio: 1.488595e-01	ci left: 1.940850e-03	ci right 2.255875e-03	k: 691	n:330000
Cons ci ratio: 4.599542e-02	ci left: 2.104078e-02	ci right 2.203432e-02	k: 7106	n:330000
KS ci ratio: 4.809128e-02	ci left: 1.926151e-02	ci right 2.021362e-02	k: 6512	n:330000
UMODL1   330000 perm   126 sec   (2618 perm/sec)   p_kst 1.973333e-02   p_cons 2.153333e-02   p_joint 2.093939e-03

Joint ci ratio: 1.463427e-01	ci left: 1.951748e-03	ci right 2.262718e-03	k: 715	n:340000
Cons ci ratio: 4.523626e-02	ci left: 2.111978e-02	ci right 2.210016e-02	k: 7346	n:340000
KS ci ratio: 4.744867e-02	ci left: 1.921226e-02	ci right 2.014889e-02	k: 6690	n:340000
UMODL1   340000 perm   131 sec   (2594 perm/sec)   p_kst 1.967647e-02   p_cons 2.160588e-02   p_joint 2.102941e-03

Joint ci ratio: 1.449341e-01	ci left: 1.934525e-03	ci right 2.239527e-03	k: 729	n:350000
Cons ci ratio: 4.460973e-02	ci left: 2.110397e-02	ci right 2.206969e-02	k: 7554	n:350000
KS ci ratio: 4.669265e-02	ci left: 1.927888e-02	ci right 2.020338e-02	k: 6908	n:350000
UMODL1   350000 perm   136 sec   (2571 perm/sec)   p_kst 1.973714e-02   p_cons 2.158286e-02   p_joint 2.082857e-03

Joint ci ratio: 1.540917e-01	ci left: 1.656157e-03	ci right 1.935294e-03	k: 645	n:360000
Cons ci ratio: 4.401433e-02	ci left: 2.108362e-02	ci right 2.203521e-02	k: 7760	n:360000
KS ci ratio: 4.596178e-02	ci left: 1.935015e-02	ci right 2.026316e-02	k: 7129	n:360000
UMODL1   360000 perm   141 sec   (2547 perm/sec)   p_kst 1.980278e-02   p_cons 2.155556e-02   p_joint 1.791667e-03

Joint ci ratio: 1.516459e-01	ci left: 1.665982e-03	ci right 1.941914e-03	k: 666	n:370000
Cons ci ratio: 4.333388e-02	ci left: 2.116874e-02	ci right 2.210904e-02	k: 8005	n:370000
KS ci ratio: 4.541570e-02	ci left: 1.928938e-02	ci right 2.018843e-02	k: 7302	n:370000
UMODL1   370000 perm   147 sec   (2523 perm/sec)   p_kst 1.973514e-02   p_cons 2.163514e-02   p_joint 1.800000e-03

Joint ci ratio: 1.498596e-01	ci left: 1.662658e-03	ci right 1.934503e-03	k: 682	n:380000
Cons ci ratio: 4.272108e-02	ci left: 2.121304e-02	ci right 2.214165e-02	k: 8236	n:380000
KS ci ratio: 4.485802e-02	ci left: 1.925790e-02	ci right 2.014418e-02	k: 7485	n:380000
UMODL1   380000 perm   152 sec   (2501 perm/sec)   p_kst 1.969737e-02   p_cons 2.167368e-02   p_joint 1.794737e-03

Joint ci ratio: 1.319187e-01	ci left: 2.109924e-03	ci right 2.410369e-03	k: 880	n:390000
Cons ci ratio: 4.351408e-02	ci left: 1.994086e-02	ci right 2.083039e-02	k: 7949	n:390000
KS ci ratio: 4.374493e-02	ci left: 1.973285e-02	ci right 2.061789e-02	k: 7867	n:390000
UMODL1   390000 perm   157 sec   (2479 perm/sec)   p_kst 2.017179e-02   p_cons 2.038205e-02   p_joint 2.256410e-03

Joint ci ratio: 1.306650e-01	ci left: 2.098279e-03	ci right 2.394006e-03	k: 897	n:400000
Cons ci ratio: 4.300130e-02	ci left: 1.991467e-02	ci right 2.079230e-02	k: 8140	n:400000
KS ci ratio: 4.325143e-02	ci left: 1.968710e-02	ci right 2.055987e-02	k: 8048	n:400000
UMODL1   400000 perm   163 sec   (2457 perm/sec)   p_kst 2.012000e-02   p_cons 2.035000e-02   p_joint 2.242500e-03

Joint ci ratio: 1.323028e-01	ci left: 1.995201e-03	ci right 2.280201e-03	k: 875	n:410000
Cons ci ratio: 4.244129e-02	ci left: 1.995015e-02	ci right 2.081762e-02	k: 8356	n:410000
KS ci ratio: 4.270811e-02	ci left: 1.970397e-02	ci right 2.056625e-02	k: 8254	n:410000
UMODL1   410000 perm   168 sec   (2434 perm/sec)   p_kst 2.013171e-02   p_cons 2.038049e-02   p_joint 2.134146e-03

Joint ci ratio: 1.351980e-01	ci left: 1.862539e-03	ci right 2.134880e-03	k: 838	n:420000
Cons ci ratio: 4.194257e-02	ci left: 1.994632e-02	ci right 2.080318e-02	k: 8556	n:420000
KS ci ratio: 4.222552e-02	ci left: 1.968240e-02	ci right 2.053376e-02	k: 8444	n:420000
UMODL1   420000 perm   174 sec   (2412 perm/sec)   p_kst 2.010476e-02   p_cons 2.037143e-02   p_joint 1.995238e-03

Joint ci ratio: 1.341637e-01	ci left: 1.848438e-03	ci right 2.116484e-03	k: 851	n:430000
Cons ci ratio: 4.147795e-02	ci left: 1.992660e-02	ci right 2.077290e-02	k: 8749	n:430000
KS ci ratio: 4.176881e-02	ci left: 1.965268e-02	ci right 2.049334e-02	k: 8630	n:430000
UMODL1   430000 perm   180 sec   (2391 perm/sec)   p_kst 2.006977e-02   p_cons 2.034651e-02   p_joint 1.979070e-03

Joint ci ratio: 1.360188e-01	ci left: 1.755916e-03	ci right 2.014351e-03	k: 828	n:440000
Cons ci ratio: 4.104249e-02	ci left: 1.989433e-02	ci right 2.073018e-02	k: 8936	n:440000
KS ci ratio: 4.125265e-02	ci left: 1.969410e-02	ci right 2.052588e-02	k: 8847	n:440000
UMODL1   440000 perm   186 sec   (2370 perm/sec)   p_kst 2.010682e-02   p_cons 2.030909e-02   p_joint 1.881818e-03

Joint ci ratio: 1.348052e-01	ci left: 1.749099e-03	ci right 2.004050e-03	k: 843	n:450000
Cons ci ratio: 4.060004e-02	ci left: 1.988334e-02	ci right 2.070952e-02	k: 9132	n:450000
KS ci ratio: 4.079423e-02	ci left: 1.969634e-02	ci right 2.051875e-02	k: 9047	n:450000
UMODL1   450000 perm   192 sec   (2350 perm/sec)   p_kst 2.010444e-02   p_cons 2.029333e-02   p_joint 1.873333e-03

Joint ci ratio: 1.374434e-01	ci left: 1.643873e-03	ci right 1.888558e-03	k: 811	n:460000
Cons ci ratio: 4.017598e-02	ci left: 1.986857e-02	ci right 2.068531e-02	k: 9326	n:460000
KS ci ratio: 4.035743e-02	ci left: 1.969207e-02	ci right 2.050529e-02	k: 9244	n:460000
UMODL1   460000 perm   197 sec   (2330 perm/sec)   p_kst 2.009565e-02   p_cons 2.027391e-02   p_joint 1.763043e-03

Joint ci ratio: 1.162151e-01	ci left: 2.274518e-03	ci right 2.557204e-03	k: 1134	n:470000
Cons ci ratio: 3.973726e-02	ci left: 1.988186e-02	ci right 2.069002e-02	k: 9533	n:470000
KS ci ratio: 3.991712e-02	ci left: 1.970488e-02	ci right 2.050956e-02	k: 9449	n:470000
UMODL1   470000 perm   203 sec   (2310 perm/sec)   p_kst 2.010426e-02   p_cons 2.028298e-02   p_joint 2.412766e-03

Joint ci ratio: 1.148567e-01	ci left: 2.281757e-03	ci right 2.561803e-03	k: 1161	n:480000
Cons ci ratio: 3.930437e-02	ci left: 1.990290e-02	ci right 2.070290e-02	k: 9744	n:480000
KS ci ratio: 3.937454e-02	ci left: 1.983275e-02	ci right 2.063139e-02	k: 9710	n:480000
UMODL1   480000 perm   210 sec   (2289 perm/sec)   p_kst 2.022917e-02   p_cons 2.030000e-02   p_joint 2.418750e-03

Joint ci ratio: 1.136406e-01	ci left: 2.284753e-03	ci right 2.561999e-03	k: 1186	n:490000
Cons ci ratio: 3.890327e-02	ci left: 1.990493e-02	ci right 2.069667e-02	k: 9946	n:490000
KS ci ratio: 3.896529e-02	ci left: 1.984227e-02	ci right 2.063280e-02	k: 9915	n:490000
UMODL1   490000 perm   216 sec   (2269 perm/sec)   p_kst 2.023469e-02   p_cons 2.029796e-02   p_joint 2.420408e-03

Joint ci ratio: 1.138841e-01	ci left: 2.229339e-03	ci right 2.500479e-03	k: 1181	n:500000
Cons ci ratio: 3.851809e-02	ci left: 1.990296e-02	ci right 2.068661e-02	k: 10146	n:500000
KS ci ratio: 3.857439e-02	ci left: 1.984551e-02	ci right 2.062806e-02	k: 10117	n:500000
UMODL1   500000 perm   222 sec   (2251 perm/sec)   p_kst 2.023400e-02   p_cons 2.029200e-02   p_joint 2.362000e-03

Joint ci ratio: 1.126516e-01	ci left: 2.235163e-03	ci right 2.503873e-03	k: 1207	n:510000
Cons ci ratio: 3.811781e-02	ci left: 1.992830e-02	ci right 2.070461e-02	k: 10360	n:510000
KS ci ratio: 3.822527e-02	ci left: 1.981758e-02	ci right 2.059180e-02	k: 10303	n:510000
UMODL1   510000 perm   228 sec   (2233 perm/sec)   p_kst 2.020196e-02   p_cons 2.031373e-02   p_joint 2.366667e-03

Joint ci ratio: 1.112776e-01	ci left: 2.248257e-03	ci right 2.515028e-03	k: 1237	n:520000
Cons ci ratio: 3.776439e-02	ci left: 1.991651e-02	ci right 2.068501e-02	k: 10555	n:520000
KS ci ratio: 3.785785e-02	ci left: 1.981934e-02	ci right 2.058602e-02	k: 10504	n:520000
UMODL1   520000 perm   235 sec   (2214 perm/sec)   p_kst 2.020000e-02   p_cons 2.029808e-02   p_joint 2.378846e-03

Joint ci ratio: 1.114155e-01	ci left: 2.200331e-03	ci right 2.461761e-03	k: 1234	n:530000
Cons ci ratio: 3.742241e-02	ci left: 1.990332e-02	ci right 2.066420e-02	k: 10749	n:530000
KS ci ratio: 3.751513e-02	ci left: 1.980610e-02	ci right 2.056519e-02	k: 10697	n:530000
UMODL1   530000 perm   241 sec   (2196 perm/sec)   p_kst 2.018302e-02   p_cons 2.028113e-02   p_joint 2.328302e-03

Joint ci ratio: 1.156730e-01	ci left: 1.999436e-03	ci right 2.246695e-03	k: 1145	n:540000
Cons ci ratio: 3.709647e-02	ci left: 1.988331e-02	ci right 2.063667e-02	k: 10939	n:540000
KS ci ratio: 3.717284e-02	ci left: 1.980257e-02	ci right 2.055445e-02	k: 10895	n:540000
UMODL1   540000 perm   248 sec   (2178 perm/sec)   p_kst 2.017593e-02   p_cons 2.025741e-02   p_joint 2.120370e-03

Joint ci ratio: 1.149736e-01	ci left: 1.987802e-03	ci right 2.232035e-03	k: 1159	n:550000
Cons ci ratio: 3.677384e-02	ci left: 1.986946e-02	ci right 2.061561e-02	k: 11132	n:550000
KS ci ratio: 3.680929e-02	ci left: 1.983162e-02	ci right 2.057708e-02	k: 11111	n:550000
UMODL1   550000 perm   255 sec   (2158 perm/sec)   p_kst 2.020182e-02   p_cons 2.024000e-02   p_joint 2.107273e-03

Joint ci ratio: 1.143844e-01	ci left: 1.973119e-03	ci right 2.214221e-03	k: 1171	n:560000
Cons ci ratio: 3.648910e-02	ci left: 1.982428e-02	ci right 2.056284e-02	k: 11307	n:560000
KS ci ratio: 3.647428e-02	ci left: 1.984020e-02	ci right 2.057906e-02	k: 11316	n:560000
UMODL1   560000 perm   262 sec   (2140 perm/sec)   p_kst 2.020714e-02   p_cons 2.019107e-02   p_joint 2.091071e-03

Joint ci ratio: 1.133732e-01	ci left: 1.974296e-03	ci right 2.213266e-03	k: 1192	n:570000
Cons ci ratio: 3.616909e-02	ci left: 1.982591e-02	ci right 2.055793e-02	k: 11508	n:570000
KS ci ratio: 3.617551e-02	ci left: 1.981895e-02	ci right 2.055085e-02	k: 11504	n:570000
UMODL1   570000 perm   268 sec   (2123 perm/sec)   p_kst 2.018246e-02   p_cons 2.018947e-02   p_joint 2.091228e-03

Joint ci ratio: 1.125278e-01	ci left: 1.970414e-03	ci right 2.207018e-03	k: 1210	n:580000
Cons ci ratio: 3.585736e-02	ci left: 1.982751e-02	ci right 2.055315e-02	k: 11709	n:580000
KS ci ratio: 3.586986e-02	ci left: 1.981384e-02	ci right 2.053924e-02	k: 11701	n:580000
UMODL1   580000 perm   276 sec   (2103 perm/sec)   p_kst 2.017414e-02   p_cons 2.018793e-02   p_joint 2.086207e-03

Joint ci ratio: 1.130926e-01	ci left: 1.917249e-03	ci right 2.148702e-03	k: 1198	n:590000
Cons ci ratio: 3.559322e-02	ci left: 1.978541e-02	ci right 2.050406e-02	k: 11884	n:590000
KS ci ratio: 3.560851e-02	ci left: 1.976861e-02	ci right 2.048696e-02	k: 11874	n:590000
UMODL1   590000 perm   283 sec   (2085 perm/sec)   p_kst 2.012542e-02   p_cons 2.014237e-02   p_joint 2.030508e-03

Joint ci ratio: 1.158373e-01	ci left: 1.794626e-03	ci right 2.016894e-03	k: 1142	n:600000
Cons ci ratio: 3.310129e-02	ci left: 2.246181e-02	ci right 2.321948e-02	k: 13703	n:600000
KS ci ratio: 3.531690e-02	ci left: 1.976455e-02	ci right 2.047676e-02	k: 12071	n:600000
UMODL1   600000 perm   290 sec   (2070 perm/sec)   p_kst 2.011833e-02   p_cons 2.283833e-02   p_joint 1.903333e-03

Joint ci ratio: 1.149856e-01	ci left: 1.792271e-03	ci right 2.012503e-03	k: 1159	n:610000
Cons ci ratio: 3.284139e-02	ci left: 2.244801e-02	ci right 2.319915e-02	k: 13921	n:610000
KS ci ratio: 3.503379e-02	ci left: 1.975903e-02	ci right 2.046521e-02	k: 12267	n:610000
UMODL1   610000 perm   297 sec   (2054 perm/sec)   p_kst 2.010984e-02   p_cons 2.282131e-02   p_joint 1.900000e-03

Joint ci ratio: 1.180337e-01	ci left: 1.670968e-03	ci right 1.882118e-03	k: 1100	n:620000
Cons ci ratio: 3.257809e-02	ci left: 2.244748e-02	ci right 2.319247e-02	k: 14147	n:620000
KS ci ratio: 3.476308e-02	ci left: 1.974731e-02	ci right 2.044751e-02	k: 12459	n:620000
UMODL1   620000 perm   304 sec   (2038 perm/sec)   p_kst 2.009516e-02   p_cons 2.281774e-02   p_joint 1.774194e-03

Joint ci ratio: 1.181429e-01	ci left: 1.641363e-03	ci right 1.848976e-03	k: 1098	n:630000
Cons ci ratio: 3.232218e-02	ci left: 2.244542e-02	ci right 2.318438e-02	k: 14372	n:630000
KS ci ratio: 3.447770e-02	ci left: 1.975959e-02	ci right 2.045436e-02	k: 12666	n:630000
UMODL1   630000 perm   312 sec   (2022 perm/sec)   p_kst 2.010476e-02   p_cons 2.281270e-02   p_joint 1.742857e-03

Joint ci ratio: 1.172397e-01	ci left: 1.641497e-03	ci right 1.847430e-03	k: 1115	n:640000
Cons ci ratio: 3.203404e-02	ci left: 2.249615e-02	ci right 2.323006e-02	k: 14631	n:640000
KS ci ratio: 3.420195e-02	ci left: 1.976841e-02	ci right 2.045782e-02	k: 12871	n:640000
UMODL1   640000 perm   319 sec   (2007 perm/sec)   p_kst 2.011094e-02   p_cons 2.286094e-02   p_joint 1.742188e-03

Joint ci ratio: 1.159984e-01	ci left: 1.652090e-03	ci right 1.857007e-03	k: 1139	n:650000
Cons ci ratio: 3.180817e-02	ci left: 2.246902e-02	ci right 2.319678e-02	k: 14840	n:650000
KS ci ratio: 3.392344e-02	ci left: 1.978766e-02	ci right 2.047202e-02	k: 13083	n:650000
UMODL1   650000 perm   326 sec   (1992 perm/sec)   p_kst 2.012769e-02   p_cons 2.283077e-02   p_joint 1.752308e-03

Joint ci ratio: 1.152430e-01	ci left: 1.649128e-03	ci right 1.852255e-03	k: 1154	n:660000
Cons ci ratio: 3.156556e-02	ci left: 2.247280e-02	ci right 2.319503e-02	k: 15069	n:660000
KS ci ratio: 3.366067e-02	ci left: 1.979583e-02	ci right 2.047506e-02	k: 13288	n:660000
UMODL1   660000 perm   334 sec   (1977 perm/sec)   p_kst 2.013333e-02   p_cons 2.283182e-02   p_joint 1.748485e-03

Joint ci ratio: 1.160525e-01	ci left: 1.601322e-03	ci right 1.800041e-03	k: 1138	n:670000
Cons ci ratio: 3.135359e-02	ci left: 2.244094e-02	ci right 2.315722e-02	k: 15274	n:670000
KS ci ratio: 3.341150e-02	ci left: 1.979489e-02	ci right 2.046897e-02	k: 13487	n:670000
UMODL1   670000 perm   341 sec   (1962 perm/sec)   p_kst 2.012985e-02   p_cons 2.279701e-02   p_joint 1.698507e-03

Joint ci ratio: 1.170358e-01	ci left: 1.550644e-03	ci right 1.744818e-03	k: 1119	n:680000
Cons ci ratio: 3.112937e-02	ci left: 2.243339e-02	ci right 2.314421e-02	k: 15495	n:680000
KS ci ratio: 3.318386e-02	ci left: 1.977504e-02	ci right 2.044377e-02	k: 13673	n:680000
UMODL1   680000 perm   349 sec   (1948 perm/sec)   p_kst 2.010735e-02   p_cons 2.278676e-02   p_joint 1.645588e-03

Joint ci ratio: 1.164142e-01	ci left: 1.545054e-03	ci right 1.737430e-03	k: 1131	n:690000
Cons ci ratio: 3.091996e-02	ci left: 2.241169e-02	ci right 2.311696e-02	k: 15706	n:690000
KS ci ratio: 3.295596e-02	ci left: 1.976153e-02	ci right 2.042512e-02	k: 13863	n:690000
UMODL1   690000 perm   357 sec   (1933 perm/sec)   p_kst 2.009130e-02   p_cons 2.276232e-02   p_joint 1.639130e-03

Joint ci ratio: 1.173011e-01	ci left: 1.499404e-03	ci right 1.687616e-03	k: 1114	n:700000
Cons ci ratio: 3.069302e-02	ci left: 2.242182e-02	ci right 2.312214e-02	k: 15939	n:700000
KS ci ratio: 3.270776e-02	ci left: 1.977817e-02	ci right 2.043723e-02	k: 14074	n:700000
UMODL1   700000 perm   365 sec   (1918 perm/sec)   p_kst 2.010571e-02   p_cons 2.277000e-02   p_joint 1.591429e-03

Joint ci ratio: 1.163654e-01	ci left: 1.502897e-03	ci right 1.689940e-03	k: 1132	n:710000
Cons ci ratio: 3.049128e-02	ci left: 2.240232e-02	ci right 2.309736e-02	k: 16151	n:710000
KS ci ratio: 3.246393e-02	ci left: 1.979577e-02	ci right 2.045041e-02	k: 14286	n:710000
UMODL1   710000 perm   373 sec   (1905 perm/sec)   p_kst 2.012113e-02   p_cons 2.274789e-02   p_joint 1.594366e-03

Joint ci ratio: 1.047770e-01	ci left: 1.838593e-03	ci right 2.043225e-03	k: 1396	n:720000
Cons ci ratio: 3.029156e-02	ci left: 2.238614e-02	ci right 2.307604e-02	k: 16365	n:720000
KS ci ratio: 3.225841e-02	ci left: 1.977294e-02	ci right 2.042260e-02	k: 14469	n:720000
UMODL1   720000 perm   381 sec   (1892 perm/sec)   p_kst 2.009583e-02   p_cons 2.272917e-02   p_joint 1.938889e-03

Joint ci ratio: 1.043675e-01	ci left: 1.828081e-03	ci right 2.030699e-03	k: 1407	n:730000
Cons ci ratio: 3.008829e-02	ci left: 2.238129e-02	ci right 2.306634e-02	k: 16587	n:730000
KS ci ratio: 3.205228e-02	ci left: 1.975618e-02	ci right 2.040107e-02	k: 14656	n:730000
UMODL1   730000 perm   389 sec   (1879 perm/sec)   p_kst 2.007671e-02   p_cons 2.272192e-02   p_joint 1.927397e-03

Joint ci ratio: 1.041468e-01	ci left: 1.811273e-03	ci right 2.011577e-03	k: 1413	n:740000
Cons ci ratio: 2.989725e-02	ci left: 2.236452e-02	ci right 2.304463e-02	k: 16800	n:740000
KS ci ratio: 3.183692e-02	ci left: 1.975597e-02	ci right 2.039644e-02	k: 14855	n:740000
UMODL1   740000 perm   397 sec   (1865 perm/sec)   p_kst 2.007432e-02   p_cons 2.270270e-02   p_joint 1.909459e-03

Joint ci ratio: 1.069905e-01	ci left: 1.691055e-03	ci right 1.883493e-03	k: 1339	n:750000
Cons ci ratio: 2.970802e-02	ci left: 2.235085e-02	ci right 2.302617e-02	k: 17015	n:750000
KS ci ratio: 3.163872e-02	ci left: 1.973991e-02	ci right 2.037580e-02	k: 15042	n:750000
UMODL1   750000 perm   405 sec   (1852 perm/sec)   p_kst 2.005600e-02   p_cons 2.268667e-02   p_joint 1.785333e-03

Joint ci ratio: 1.066732e-01	ci left: 1.679049e-03	ci right 1.869518e-03	k: 1347	n:760000
Cons ci ratio: 2.949170e-02	ci left: 2.238328e-02	ci right 2.305457e-02	k: 17265	n:760000
KS ci ratio: 3.140841e-02	ci left: 1.976868e-02	ci right 2.040078e-02	k: 15263	n:760000
UMODL1   760000 perm   413 sec   (1839 perm/sec)   p_kst 2.008289e-02   p_cons 2.271711e-02   p_joint 1.772368e-03

Joint ci ratio: 1.062411e-01	ci left: 1.671148e-03	ci right 1.859905e-03	k: 1358	n:770000
Cons ci ratio: 2.931001e-02	ci left: 2.236975e-02	ci right 2.303644e-02	k: 17480	n:770000
KS ci ratio: 3.121496e-02	ci left: 1.975676e-02	ci right 2.038452e-02	k: 15453	n:770000
UMODL1   770000 perm   422 sec   (1825 perm/sec)   p_kst 2.006883e-02   p_cons 2.270130e-02   p_joint 1.763636e-03

Joint ci ratio: 1.056983e-01	ci left: 1.667196e-03	ci right 1.854484e-03	k: 1372	n:780000
Cons ci ratio: 2.910809e-02	ci left: 2.239223e-02	ci right 2.305491e-02	k: 17723	n:780000
KS ci ratio: 3.103720e-02	ci left: 1.972989e-02	ci right 2.035317e-02	k: 15631	n:780000
UMODL1   780000 perm   430 sec   (1813 perm/sec)   p_kst 2.003974e-02   p_cons 2.272179e-02   p_joint 1.758974e-03

Joint ci ratio: 1.052017e-01	ci left: 1.662113e-03	ci right 1.847900e-03	k: 1385	n:790000
Cons ci ratio: 2.892017e-02	ci left: 2.239907e-02	ci right 2.305760e-02	k: 17954	n:790000
KS ci ratio: 3.083955e-02	ci left: 1.973261e-02	ci right 2.035193e-02	k: 15832	n:790000
UMODL1   790000 perm   439 sec   (1801 perm/sec)   p_kst 2.004051e-02   p_cons 2.272658e-02   p_joint 1.753165e-03

Joint ci ratio: 1.048624e-01	ci left: 1.652291e-03	ci right 1.836347e-03	k: 1394	n:800000
Cons ci ratio: 2.875445e-02	ci left: 2.237720e-02	ci right 2.303126e-02	k: 18162	n:800000
KS ci ratio: 3.063588e-02	ci left: 1.974768e-02	ci right 2.036330e-02	k: 16043	n:800000
UMODL1   800000 perm   447 sec   (1789 perm/sec)   p_kst 2.005375e-02   p_cons 2.270250e-02   p_joint 1.742500e-03

Joint ci ratio: 1.041923e-01	ci left: 1.653534e-03	ci right 1.836479e-03	k: 1412	n:810000
Cons ci ratio: 2.857326e-02	ci left: 2.238408e-02	ci right 2.303415e-02	k: 18393	n:810000
KS ci ratio: 3.045436e-02	ci left: 1.973910e-02	ci right 2.035075e-02	k: 16235	n:810000
UMODL1   810000 perm   456 sec   (1778 perm/sec)   p_kst 2.004321e-02   p_cons 2.270741e-02   p_joint 1.743210e-03

Joint ci ratio: 1.050912e-01	ci left: 1.604864e-03	ci right 1.784051e-03	k: 1388	n:820000
Cons ci ratio: 2.838843e-02	ci left: 2.240171e-02	ci right 2.304801e-02	k: 18633	n:820000
KS ci ratio: 3.024598e-02	ci left: 1.976949e-02	ci right 2.037781e-02	k: 16459	n:820000
UMODL1   820000 perm   464 sec   (1766 perm/sec)   p_kst 2.007195e-02   p_cons 2.272317e-02   p_joint 1.692683e-03

Joint ci ratio: 1.042314e-01	ci left: 1.612514e-03	ci right 1.790992e-03	k: 1411	n:830000
Cons ci ratio: 2.821325e-02	ci left: 2.240935e-02	ci right 2.305182e-02	k: 18865	n:830000
KS ci ratio: 3.003540e-02	ci left: 1.980752e-02	ci right 2.041270e-02	k: 16690	n:830000
UMODL1   830000 perm   473 sec   (1754 perm/sec)   p_kst 2.010843e-02   p_cons 2.272892e-02   p_joint 1.700000e-03

Joint ci ratio: 1.041218e-01	ci left: 1.596795e-03	ci right 1.773336e-03	k: 1414	n:840000
Cons ci ratio: 2.804805e-02	ci left: 2.240618e-02	ci right 2.304474e-02	k: 19088	n:840000
KS ci ratio: 2.983095e-02	ci left: 1.984230e-02	ci right 2.044435e-02	k: 16919	n:840000
UMODL1   840000 perm   482 sec   (1741 perm/sec)   p_kst 2.014167e-02   p_cons 2.272381e-02   p_joint 1.683333e-03

Joint ci ratio: 1.046800e-01	ci left: 1.560822e-03	ci right 1.734367e-03	k: 1399	n:850000
Cons ci ratio: 2.788645e-02	ci left: 2.240193e-02	ci right 2.303663e-02	k: 19310	n:850000
KS ci ratio: 2.965003e-02	ci left: 1.985058e-02	ci right 2.044917e-02	k: 17126	n:850000
UMODL1   850000 perm   491 sec   (1729 perm/sec)   p_kst 2.014824e-02   p_cons 2.271765e-02   p_joint 1.645882e-03

Joint ci ratio: 1.040134e-01	ci left: 1.563057e-03	ci right 1.735677e-03	k: 1417	n:860000
Cons ci ratio: 2.774288e-02	ci left: 2.237353e-02	ci right 2.300411e-02	k: 19511	n:860000
KS ci ratio: 2.947670e-02	ci left: 1.985291e-02	ci right 2.044800e-02	k: 17328	n:860000
UMODL1   860000 perm   501 sec   (1718 perm/sec)   p_kst 2.014884e-02   p_cons 2.268721e-02   p_joint 1.647674e-03

Joint ci ratio: 9.323861e-02	ci left: 1.933027e-03	ci right 2.123186e-03	k: 1763	n:870000
Cons ci ratio: 2.759577e-02	ci left: 2.235493e-02	ci right 2.298159e-02	k: 19720	n:870000
KS ci ratio: 2.932431e-02	ci left: 1.983123e-02	ci right 2.042255e-02	k: 17509	n:870000
UMODL1   870000 perm   510 sec   (1706 perm/sec)   p_kst 2.012529e-02   p_cons 2.266667e-02   p_joint 2.026437e-03

Outputting figure to mutsig2_images.part000000000186/UMODL1.11_4425_870000_0.020125_0.022667_0.0020264.png
                gene_name: UMODL1
               theta_stop: 0.093 
                    nperm: 870000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 16 percent done.
UBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
KS ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
UBR1   10000 perm   2 sec   (4279 perm/sec)   p_kst 3.814000e-01   p_cons 1.074000e-01   p_joint 2.637000e-01

Joint ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
Cons ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
KS ci ratio: 3.468446e-02	ci left: 3.829326e-01	ci right 3.964994e-01	k: 7794	n:20000
UBR1   20000 perm   5 sec   (3920 perm/sec)   p_kst 3.897000e-01   p_cons 1.079500e-01   p_joint 2.302500e-01

Outputting figure to mutsig2_images.part000000000186/UBR1.9_5438_20000_0.3897_0.10795_0.23025.png
                gene_name: UBR1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 17 percent done.
UGGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
KS ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
UGGT1   10000 perm   2 sec   (4425 perm/sec)   p_kst 7.641000e-01   p_cons 7.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGGT1.9_4832_10000_0.7641_0.7442_1.png
                gene_name: UGGT1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
UGGT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
UGGT2   10000 perm   2 sec   (4265 perm/sec)   p_kst 2.896000e-01   p_cons 1.897000e-01   p_joint 2.712000e-01

Outputting figure to mutsig2_images.part000000000186/UGGT2.9_4707_10000_0.2896_0.1897_0.2712.png
                gene_name: UGGT2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 21 percent done.
ULK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
Cons ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
ULK4   10000 perm   2 sec   (4477 perm/sec)   p_kst 8.091000e-01   p_cons 1.330000e-01   p_joint 4.907000e-01

Joint ci ratio: 3.359742e-02	ci left: 3.981361e-01	ci right 4.117916e-01	k: 8099	n:20000
Cons ci ratio: 7.078503e-02	ci left: 1.282239e-01	ci right 1.376831e-01	k: 2658	n:20000
KS ci ratio: 1.289252e-02	ci left: 8.167788e-01	ci right 8.274274e-01	k: 16443	n:20000
ULK4   20000 perm   5 sec   (4095 perm/sec)   p_kst 8.221500e-01   p_cons 1.329000e-01   p_joint 4.049500e-01

Outputting figure to mutsig2_images.part000000000186/ULK4.9_3972_20000_0.82215_0.1329_0.40495.png
                gene_name: ULK4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
UBQLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
Cons ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
KS ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
UBQLN3   10000 perm   2 sec   (5139 perm/sec)   p_kst 1.326000e-01   p_cons 1.013000e-01   p_joint 1.383000e-01

Joint ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
Cons ci ratio: 8.224334e-02	ci left: 9.778957e-02	ci right 1.062265e-01	k: 2039	n:20000
KS ci ratio: 6.885612e-02	ci left: 1.346274e-01	ci right 1.442777e-01	k: 2788	n:20000
UBQLN3   20000 perm   4 sec   (4660 perm/sec)   p_kst 1.394000e-01   p_cons 1.019500e-01   p_joint 9.310000e-02

Outputting figure to mutsig2_images.part000000000186/UBQLN3.8_1972_20000_0.1394_0.10195_0.0931.png
                gene_name: UBQLN3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 24 percent done.
UBXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
UBXN1   10000 perm   2 sec   (5769 perm/sec)   p_kst 5.405000e-01   p_cons 3.090000e-02   p_joint 1.568000e-01

Joint ci ratio: 7.655473e-02	ci left: 1.114456e-01	ci right 1.203665e-01	k: 2317	n:20000
Cons ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
KS ci ratio: 2.592052e-02	ci left: 5.265066e-01	ci right 5.403837e-01	k: 10669	n:20000
UBXN1   20000 perm   4 sec   (5164 perm/sec)   p_kst 5.334500e-01   p_cons 3.115000e-02   p_joint 1.158500e-01

Joint ci ratio: 5.860797e-02	ci left: 1.259504e-01	ci right 1.335881e-01	k: 3892	n:30000
Cons ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
KS ci ratio: 2.155668e-02	ci left: 5.186300e-01	ci right 5.299653e-01	k: 15729	n:30000
UBXN1   30000 perm   6 sec   (4909 perm/sec)   p_kst 5.243000e-01   p_cons 3.263333e-02   p_joint 1.297333e-01

Joint ci ratio: 4.688702e-02	ci left: 1.452511e-01	ci right 1.522499e-01	k: 5949	n:40000
Cons ci ratio: 1.080607e-01	ci left: 3.012635e-02	ci right 3.359205e-02	k: 1273	n:40000
KS ci ratio: 1.859507e-02	ci left: 5.213676e-01	ci right 5.311786e-01	k: 21051	n:40000
UBXN1   40000 perm   8 sec   (4761 perm/sec)   p_kst 5.262750e-01   p_cons 3.182500e-02   p_joint 1.487250e-01

Joint ci ratio: 4.878535e-02	ci left: 1.115631e-01	ci right 1.171617e-01	k: 5717	n:50000
Cons ci ratio: 9.860414e-02	ci left: 2.912718e-02	ci right 3.216764e-02	k: 1531	n:50000
KS ci ratio: 1.666192e-02	ci left: 5.209917e-01	ci right 5.297654e-01	k: 26269	n:50000
UBXN1   50000 perm   11 sec   (4641 perm/sec)   p_kst 5.253800e-01   p_cons 3.062000e-02   p_joint 1.143400e-01

Outputting figure to mutsig2_images.part000000000186/UBXN1.8_971_50000_0.52538_0.03062_0.11434.png
                gene_name: UBXN1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 26 percent done.
UGT2B28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
KS ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
UGT2B28   10000 perm   2 sec   (5731 perm/sec)   p_kst 3.500000e-02   p_cons 1.940000e-02   p_joint 1.190000e-02

Joint ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
UGT2B28   20000 perm   4 sec   (5119 perm/sec)   p_kst 3.515000e-02   p_cons 1.690000e-02   p_joint 1.845000e-02

Joint ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
Cons ci ratio: 1.714134e-01	ci left: 1.566320e-02	ci right 1.863136e-02	k: 513	n:30000
KS ci ratio: 1.120449e-01	ci left: 3.699955e-02	ci right 4.142359e-02	k: 1175	n:30000
UGT2B28   30000 perm   6 sec   (4847 perm/sec)   p_kst 3.916667e-02   p_cons 1.710000e-02   p_joint 1.483333e-02

Joint ci ratio: 1.811182e-01	ci left: 1.052598e-02	ci right 1.264582e-02	k: 462	n:40000
Cons ci ratio: 1.433544e-01	ci left: 1.703317e-02	ci right 1.968741e-02	k: 733	n:40000
KS ci ratio: 9.636447e-02	ci left: 3.780753e-02	ci right 4.165966e-02	k: 1588	n:40000
UGT2B28   40000 perm   9 sec   (4681 perm/sec)   p_kst 3.970000e-02   p_cons 1.832500e-02   p_joint 1.155000e-02

Joint ci ratio: 1.175965e-01	ci left: 2.046014e-02	ci right 2.303581e-02	k: 1086	n:50000
Cons ci ratio: 1.293378e-01	ci left: 1.687206e-02	ci right 1.922437e-02	k: 901	n:50000
KS ci ratio: 8.517478e-02	ci left: 3.890639e-02	ci right 4.238720e-02	k: 2031	n:50000
UGT2B28   50000 perm   11 sec   (4557 perm/sec)   p_kst 4.062000e-02   p_cons 1.802000e-02   p_joint 2.172000e-02

Joint ci ratio: 9.983764e-02	ci left: 2.379797e-02	ci right 2.631493e-02	k: 1502	n:60000
Cons ci ratio: 1.102087e-01	ci left: 1.951079e-02	ci right 2.180257e-02	k: 1238	n:60000
KS ci ratio: 7.791037e-02	ci left: 3.890389e-02	ci right 4.207409e-02	k: 2428	n:60000
UGT2B28   60000 perm   13 sec   (4451 perm/sec)   p_kst 4.046667e-02   p_cons 2.063333e-02   p_joint 2.503333e-02

Joint ci ratio: 1.981975e-01	ci left: 5.006296e-03	ci right 6.121005e-03	k: 388	n:70000
Cons ci ratio: 1.123764e-01	ci left: 1.612473e-02	ci right 1.805845e-02	k: 1195	n:70000
KS ci ratio: 7.191753e-02	ci left: 3.924815e-02	ci right 4.219008e-02	k: 2849	n:70000
UGT2B28   70000 perm   16 sec   (4358 perm/sec)   p_kst 4.070000e-02   p_cons 1.707143e-02   p_joint 5.542857e-03

Joint ci ratio: 1.891940e-01	ci left: 4.832441e-03	ci right 5.853937e-03	k: 426	n:80000
Cons ci ratio: 1.050349e-01	ci left: 1.621292e-02	ci right 1.802234e-02	k: 1368	n:80000
KS ci ratio: 6.678416e-02	ci left: 3.990695e-02	ci right 4.267644e-02	k: 3302	n:80000
UGT2B28   80000 perm   19 sec   (4271 perm/sec)   p_kst 4.127500e-02   p_cons 1.710000e-02   p_joint 5.325000e-03

Joint ci ratio: 1.583072e-01	ci left: 6.230784e-03	ci right 7.312485e-03	k: 608	n:90000
Cons ci ratio: 9.919597e-02	ci left: 1.620884e-02	ci right 1.791138e-02	k: 1534	n:90000
KS ci ratio: 6.323035e-02	ci left: 3.965907e-02	ci right 4.225951e-02	k: 3685	n:90000
UGT2B28   90000 perm   21 sec   (4190 perm/sec)   p_kst 4.094444e-02   p_cons 1.704444e-02   p_joint 6.755556e-03

Joint ci ratio: 9.964527e-02	ci left: 1.448004e-02	ci right 1.600826e-02	k: 1523	n:100000
Cons ci ratio: 9.367504e-02	ci left: 1.640319e-02	ci right 1.802498e-02	k: 1720	n:100000
KS ci ratio: 6.002042e-02	ci left: 3.968077e-02	ci right 4.214594e-02	k: 4090	n:100000
UGT2B28   100000 perm   24 sec   (4117 perm/sec)   p_kst 4.090000e-02   p_cons 1.720000e-02   p_joint 1.523000e-02

Outputting figure to mutsig2_images.part000000000186/UGT2B28.8_1614_100000_0.0409_0.0172_0.01523.png
                gene_name: UGT2B28
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 28 percent done.
UGT2B7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.852876e-02	ci left: 8.096859e-01	ci right 8.249288e-01	k: 8174	n:10000
Cons ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
KS ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
UGT2B7   10000 perm   2 sec   (5591 perm/sec)   p_kst 5.857000e-01   p_cons 4.964000e-01   p_joint 8.174000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B7.8_1614_10000_0.5857_0.4964_0.8174.png
                gene_name: UGT2B7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 29 percent done.
UHRF1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
Cons ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
KS ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
UHRF1BP1   10000 perm   2 sec   (4815 perm/sec)   p_kst 3.089000e-01   p_cons 9.537000e-01   p_joint 6.270000e-01

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1.7_4407_10000_0.3089_0.9537_0.627.png
                gene_name: UHRF1BP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 31 percent done.
UHRF1BP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
Cons ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
UHRF1BP1L   10000 perm   2 sec   (4476 perm/sec)   p_kst 1.323000e-01   p_cons 4.720000e-01   p_joint 2.086000e-01

Joint ci ratio: 5.521227e-02	ci left: 1.957122e-01	ci right 2.068748e-01	k: 4025	n:20000
Cons ci ratio: 2.932623e-02	ci left: 4.648610e-01	ci right 4.787472e-01	k: 9436	n:20000
KS ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
UHRF1BP1L   20000 perm   5 sec   (4061 perm/sec)   p_kst 1.343500e-01   p_cons 4.718000e-01   p_joint 2.012500e-01

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1L.7_4503_20000_0.13435_0.4718_0.20125.png
                gene_name: UHRF1BP1L
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
UMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
UMOD   10000 perm   2 sec   (5658 perm/sec)   p_kst 6.322000e-01   p_cons 2.145000e-01   p_joint 4.011000e-01

Outputting figure to mutsig2_images.part000000000186/UMOD.7_1963_10000_0.6322_0.2145_0.4011.png
                gene_name: UMOD
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 34 percent done.
UGT2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
Cons ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
KS ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
UGT2A3   10000 perm   2 sec   (6046 perm/sec)   p_kst 3.810000e-02   p_cons 1.936000e-01   p_joint 6.830000e-02

Joint ci ratio: 1.160707e-01	ci left: 5.081038e-02	ci right 5.712009e-02	k: 1078	n:20000
Cons ci ratio: 5.654308e-02	ci left: 1.882428e-01	ci right 1.992464e-01	k: 3874	n:20000
KS ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
UGT2A3   20000 perm   4 sec   (5367 perm/sec)   p_kst 4.020000e-02   p_cons 1.937000e-01   p_joint 5.390000e-02

Joint ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
Cons ci ratio: 4.839792e-02	ci left: 1.750728e-01	ci right 1.837894e-01	k: 5382	n:30000
KS ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
UGT2A3   30000 perm   6 sec   (5129 perm/sec)   p_kst 4.003333e-02   p_cons 1.794000e-01   p_joint 5.900000e-02

Joint ci ratio: 9.031771e-02	ci left: 4.294013e-02	ci right 4.702626e-02	k: 1798	n:40000
Cons ci ratio: 4.189022e-02	ci left: 1.758244e-01	ci right 1.833722e-01	k: 7183	n:40000
KS ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
UGT2A3   40000 perm   8 sec   (4975 perm/sec)   p_kst 3.680000e-02   p_cons 1.795750e-01   p_joint 4.495000e-02

Joint ci ratio: 7.291896e-02	ci left: 5.264412e-02	ci right 5.664779e-02	k: 2731	n:50000
Cons ci ratio: 3.749326e-02	ci left: 1.760257e-01	ci right 1.827715e-01	k: 8969	n:50000
KS ci ratio: 9.032639e-02	ci left: 3.465799e-02	ci right 3.795612e-02	k: 1814	n:50000
UGT2A3   50000 perm   10 sec   (4850 perm/sec)   p_kst 3.628000e-02   p_cons 1.793800e-01   p_joint 5.462000e-02

Outputting figure to mutsig2_images.part000000000186/UGT2A3.6_1608_50000_0.03628_0.17938_0.05462.png
                gene_name: UGT2A3
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 36 percent done.
UGT2B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
KS ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
UGT2B15   10000 perm   2 sec   (4980 perm/sec)   p_kst 5.010000e-02   p_cons 6.752000e-01   p_joint 1.140000e-01

Joint ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
Cons ci ratio: 1.914971e-02	ci left: 6.703683e-01	ci right 6.833802e-01	k: 13538	n:20000
KS ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
UGT2B15   20000 perm   4 sec   (4498 perm/sec)   p_kst 5.045000e-02   p_cons 6.769000e-01   p_joint 1.300000e-01

Joint ci ratio: 6.177586e-02	ci left: 1.146658e-01	ci right 1.220083e-01	k: 3549	n:30000
Cons ci ratio: 1.563109e-02	ci left: 6.717083e-01	ci right 6.823241e-01	k: 20311	n:30000
KS ci ratio: 9.906753e-02	ci left: 4.713763e-02	ci right 5.208339e-02	k: 1487	n:30000
UGT2B15   30000 perm   7 sec   (4306 perm/sec)   p_kst 4.956667e-02   p_cons 6.770333e-01   p_joint 1.183000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B15.6_3234_30000_0.049567_0.67703_0.1183.png
                gene_name: UGT2B15
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
UBQLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
Cons ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
UBQLN1   10000 perm   2 sec   (5510 perm/sec)   p_kst 1.132000e-01   p_cons 3.726000e-01   p_joint 2.305000e-01

Joint ci ratio: 6.200576e-02	ci left: 1.613609e-01	ci right 1.717363e-01	k: 3330	n:20000
Cons ci ratio: 3.580381e-02	ci left: 3.679852e-01	ci right 3.814512e-01	k: 7494	n:20000
KS ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
UBQLN1   20000 perm   4 sec   (4925 perm/sec)   p_kst 1.159000e-01   p_cons 3.747000e-01   p_joint 1.665000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN1.5_1814_20000_0.1159_0.3747_0.1665.png
                gene_name: UBQLN1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
UBQLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
UBQLNL   10000 perm   2 sec   (6198 perm/sec)   p_kst 7.820000e-02   p_cons 4.271000e-01   p_joint 1.388000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 3.259028e-02	ci left: 4.128475e-01	ci right 4.265758e-01	k: 8394	n:20000
KS ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
UBQLNL   20000 perm   4 sec   (5504 perm/sec)   p_kst 7.815000e-02   p_cons 4.197000e-01   p_joint 1.517500e-01

Outputting figure to mutsig2_images.part000000000186/UBQLNL.5_1432_20000_0.07815_0.4197_0.15175.png
                gene_name: UBQLNL
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 41 percent done.
UGT1A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
Cons ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
UGT1A10   10000 perm   2 sec   (5721 perm/sec)   p_kst 3.840000e-02   p_cons 9.932000e-01   p_joint 7.240000e-02

Joint ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
Cons ci ratio: 2.241761e-03	ci left: 9.923407e-01	ci right 9.946122e-01	k: 19871	n:20000
KS ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
UGT1A10   20000 perm   4 sec   (5097 perm/sec)   p_kst 4.055000e-02   p_cons 9.935500e-01   p_joint 1.076000e-01

Joint ci ratio: 6.967708e-02	ci left: 9.209840e-02	ci right 9.878018e-02	k: 2862	n:30000
Cons ci ratio: 1.811474e-03	ci left: 9.927028e-01	ci right 9.945329e-01	k: 29810	n:30000
KS ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
UGT1A10   30000 perm   6 sec   (4899 perm/sec)   p_kst 4.006667e-02   p_cons 9.936667e-01   p_joint 9.540000e-02

Joint ci ratio: 6.566646e-02	ci left: 7.910757e-02	ci right 8.450333e-02	k: 3271	n:40000
Cons ci ratio: 1.566747e-03	ci left: 9.928487e-01	ci right 9.944284e-01	k: 39747	n:40000
KS ci ratio: 9.552247e-02	ci left: 3.846696e-02	ci right 4.235012e-02	k: 1615	n:40000
UGT1A10   40000 perm   8 sec   (4759 perm/sec)   p_kst 4.037500e-02   p_cons 9.936750e-01   p_joint 8.177500e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A10.5_1613_40000_0.040375_0.99367_0.081775.png
                gene_name: UGT1A10
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 43 percent done.
UGT1A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
UGT1A9   10000 perm   2 sec   (5602 perm/sec)   p_kst 4.000000e-04   p_cons 9.581000e-01   p_joint 9.600000e-03

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 5.885512e-03	ci left: 9.539933e-01	ci right 9.596729e-01	k: 19138	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
UGT1A9   20000 perm   4 sec   (5016 perm/sec)   p_kst 4.500000e-04   p_cons 9.569000e-01   p_joint 5.750000e-03

Joint ci ratio: 3.800645e-01	ci left: 2.863519e-03	ci right 4.235401e-03	k: 105	n:30000
Cons ci ratio: 4.530434e-03	ci left: 9.592610e-01	ci right 9.636490e-01	k: 28845	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
UGT1A9   30000 perm   6 sec   (4778 perm/sec)   p_kst 4.333333e-04   p_cons 9.615000e-01   p_joint 3.500000e-03

Joint ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
Cons ci ratio: 4.005785e-03	ci left: 9.579567e-01	ci right 9.618261e-01	k: 38397	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
UGT1A9   40000 perm   9 sec   (4634 perm/sec)   p_kst 4.250000e-04   p_cons 9.599250e-01   p_joint 2.550000e-03

Joint ci ratio: 3.821471e-01	ci left: 1.699817e-03	ci right 2.519713e-03	k: 104	n:50000
Cons ci ratio: 3.628298e-03	ci left: 9.571639e-01	ci right 9.606626e-01	k: 47947	n:50000
KS ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
UGT1A9   50000 perm   11 sec   (4524 perm/sec)   p_kst 4.800000e-04   p_cons 9.589400e-01   p_joint 2.080000e-03

Joint ci ratio: 3.545362e-01	ci left: 1.673650e-03	ci right 2.409186e-03	k: 121	n:60000
Cons ci ratio: 3.271487e-03	ci left: 9.582994e-01	ci right 9.614559e-01	k: 57594	n:60000
KS ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
UGT1A9   60000 perm   14 sec   (4406 perm/sec)   p_kst 5.000000e-04   p_cons 9.599000e-01   p_joint 2.016667e-03

Joint ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
Cons ci ratio: 3.041073e-03	ci left: 9.581006e-01	ci right 9.610326e-01	k: 67171	n:70000
KS ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
UGT1A9   70000 perm   16 sec   (4307 perm/sec)   p_kst 5.000000e-04   p_cons 9.595857e-01   p_joint 4.071429e-03

Joint ci ratio: 1.947754e-01	ci left: 4.546792e-03	ci right 5.539624e-03	k: 402	n:80000
Cons ci ratio: 2.833068e-03	ci left: 9.585174e-01	ci right 9.612491e-01	k: 76792	n:80000
KS ci ratio: 5.716192e-01	ci left: 4.210021e-04	ci right 7.668958e-04	k: 46	n:80000
UGT1A9   80000 perm   19 sec   (4214 perm/sec)   p_kst 5.750000e-04   p_cons 9.599000e-01   p_joint 5.025000e-03

Joint ci ratio: 2.022757e-01	ci left: 3.735220e-03	ci right 4.586117e-03	k: 373	n:90000
Cons ci ratio: 2.667533e-03	ci left: 9.586993e-01	ci right 9.612710e-01	k: 86400	n:90000
KS ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
UGT1A9   90000 perm   22 sec   (4126 perm/sec)   p_kst 5.666667e-04   p_cons 9.600000e-01   p_joint 4.144444e-03

Joint ci ratio: 2.045254e-01	ci left: 3.285693e-03	ci right 4.043545e-03	k: 365	n:100000
Cons ci ratio: 2.540153e-03	ci left: 9.584728e-01	ci right 9.609204e-01	k: 95971	n:100000
KS ci ratio: 5.190661e-01	ci left: 4.230448e-04	ci right 7.271458e-04	k: 56	n:100000
UGT1A9   100000 perm   25 sec   (4047 perm/sec)   p_kst 5.600000e-04   p_cons 9.597100e-01   p_joint 3.650000e-03

Joint ci ratio: 2.094987e-01	ci left: 2.840388e-03	ci right 3.513501e-03	k: 348	n:110000
Cons ci ratio: 2.419383e-03	ci left: 9.586133e-01	ci right 9.609442e-01	k: 105577	n:110000
KS ci ratio: 4.898552e-01	ci left: 4.401266e-04	ci right 7.327083e-04	k: 63	n:110000
UGT1A9   110000 perm   28 sec   (3973 perm/sec)   p_kst 5.727273e-04   p_cons 9.597909e-01   p_joint 3.163636e-03

Joint ci ratio: 2.077432e-01	ci left: 2.651049e-03	ci right 3.273356e-03	k: 354	n:120000
Cons ci ratio: 2.317342e-03	ci left: 9.586311e-01	ci right 9.608633e-01	k: 115171	n:120000
KS ci ratio: 4.787685e-01	ci left: 4.253947e-04	ci right 6.996825e-04	k: 66	n:120000
UGT1A9   120000 perm   31 sec   (3902 perm/sec)   p_kst 5.500000e-04   p_cons 9.597583e-01   p_joint 2.950000e-03

Joint ci ratio: 2.080610e-01	ci left: 2.439802e-03	ci right 3.013506e-03	k: 353	n:130000
Cons ci ratio: 2.223883e-03	ci left: 9.587648e-01	ci right 9.609069e-01	k: 124780	n:130000
KS ci ratio: 4.525103e-01	ci left: 4.469942e-04	ci right 7.145652e-04	k: 74	n:130000
UGT1A9   130000 perm   34 sec   (3837 perm/sec)   p_kst 5.692308e-04   p_cons 9.598462e-01   p_joint 2.715385e-03

Joint ci ratio: 2.016175e-01	ci left: 2.421389e-03	ci right 2.970959e-03	k: 376	n:140000
Cons ci ratio: 2.141279e-03	ci left: 9.588664e-01	ci right 9.609288e-01	k: 134387	n:140000
KS ci ratio: 4.354280e-01	ci left: 4.531325e-04	ci right 7.111426e-04	k: 80	n:140000
UGT1A9   140000 perm   37 sec   (3773 perm/sec)   p_kst 5.714286e-04   p_cons 9.599071e-01   p_joint 2.685714e-03

Joint ci ratio: 1.972266e-01	ci left: 2.367631e-03	ci right 2.891889e-03	k: 393	n:150000
Cons ci ratio: 2.195504e-03	ci left: 9.540062e-01	ci right 9.561095e-01	k: 143260	n:150000
KS ci ratio: 4.250618e-01	ci left: 4.467018e-04	ci right 6.932719e-04	k: 84	n:150000
UGT1A9   150000 perm   40 sec   (3713 perm/sec)   p_kst 5.600000e-04   p_cons 9.550667e-01   p_joint 2.620000e-03

Joint ci ratio: 1.955094e-01	ci left: 2.261240e-03	ci right 2.757061e-03	k: 400	n:160000
Cons ci ratio: 2.121546e-03	ci left: 9.542129e-01	ci right 9.562456e-01	k: 152838	n:160000
KS ci ratio: 4.085695e-01	ci left: 4.579460e-04	ci right 6.982537e-04	k: 91	n:160000
UGT1A9   160000 perm   44 sec   (3646 perm/sec)   p_kst 5.687500e-04   p_cons 9.552375e-01   p_joint 2.500000e-03

Joint ci ratio: 1.519426e-01	ci left: 3.603603e-03	ci right 4.201746e-03	k: 662	n:170000
Cons ci ratio: 2.058248e-03	ci left: 9.542416e-01	ci right 9.562134e-01	k: 162390	n:170000
KS ci ratio: 3.979010e-01	ci left: 4.574368e-04	ci right 6.895595e-04	k: 96	n:170000
UGT1A9   170000 perm   47 sec   (3592 perm/sec)   p_kst 5.647059e-04   p_cons 9.552353e-01   p_joint 3.894118e-03

Joint ci ratio: 1.532403e-01	ci left: 3.344591e-03	ci right 3.904917e-03	k: 651	n:180000
Cons ci ratio: 1.943107e-03	ci left: 9.567095e-01	ci right 9.585757e-01	k: 172377	n:180000
KS ci ratio: 3.824402e-01	ci left: 4.721100e-04	ci right 7.000317e-04	k: 104	n:180000
UGT1A9   180000 perm   51 sec   (3539 perm/sec)   p_kst 5.777778e-04   p_cons 9.576500e-01   p_joint 3.616667e-03

Joint ci ratio: 1.495049e-01	ci left: 3.335664e-03	ci right 3.879654e-03	k: 684	n:190000
Cons ci ratio: 1.894035e-03	ci left: 9.566152e-01	ci right 9.584340e-01	k: 181931	n:190000
KS ci ratio: 3.719603e-01	ci left: 4.758476e-04	ci right 6.977467e-04	k: 110	n:190000
UGT1A9   190000 perm   55 sec   (3481 perm/sec)   p_kst 5.789474e-04   p_cons 9.575316e-01   p_joint 3.600000e-03

Joint ci ratio: 2.075741e-01	ci left: 1.595277e-03	ci right 1.969400e-03	k: 355	n:200000
Cons ci ratio: 1.847129e-03	ci left: 9.565916e-01	ci right 9.583651e-01	k: 191497	n:200000
KS ci ratio: 3.654359e-01	ci left: 4.702020e-04	ci right 6.847048e-04	k: 114	n:200000
UGT1A9   200000 perm   58 sec   (3434 perm/sec)   p_kst 5.700000e-04   p_cons 9.574850e-01   p_joint 1.775000e-03

Joint ci ratio: 2.055683e-01	ci left: 1.550917e-03	ci right 1.910680e-03	k: 362	n:210000
Cons ci ratio: 1.803542e-03	ci left: 9.565708e-01	ci right 9.583023e-01	k: 201063	n:210000
KS ci ratio: 3.577423e-01	ci left: 4.694581e-04	ci right 6.780634e-04	k: 119	n:210000
UGT1A9   210000 perm   62 sec   (3390 perm/sec)   p_kst 5.666667e-04   p_cons 9.574429e-01   p_joint 1.723810e-03

Joint ci ratio: 2.038954e-01	ci left: 1.506292e-03	ci right 1.852505e-03	k: 368	n:220000
Cons ci ratio: 1.765944e-03	ci left: 9.564101e-01	ci right 9.581051e-01	k: 210598	n:220000
KS ci ratio: 3.491205e-01	ci left: 4.729710e-04	ci right 6.769262e-04	k: 125	n:220000
UGT1A9   220000 perm   66 sec   (3347 perm/sec)   p_kst 5.681818e-04   p_cons 9.572636e-01   p_joint 1.672727e-03

Joint ci ratio: 2.130627e-01	ci left: 1.313037e-03	ci right 1.630175e-03	k: 337	n:230000
Cons ci ratio: 1.728283e-03	ci left: 9.563736e-01	ci right 9.580322e-01	k: 220158	n:230000
KS ci ratio: 3.360371e-01	ci left: 4.921471e-04	ci right 6.946966e-04	k: 135	n:230000
UGT1A9   230000 perm   69 sec   (3309 perm/sec)   p_kst 5.869565e-04   p_cons 9.572087e-01   p_joint 1.465217e-03

Joint ci ratio: 2.081915e-01	ci left: 1.321478e-03	ci right 1.632428e-03	k: 353	n:240000
Cons ci ratio: 1.693189e-03	ci left: 9.563279e-01	ci right 9.579527e-01	k: 229715	n:240000
KS ci ratio: 3.277085e-01	ci left: 4.983781e-04	ci right 6.973385e-04	k: 142	n:240000
UGT1A9   240000 perm   73 sec   (3273 perm/sec)   p_kst 5.916667e-04   p_cons 9.571458e-01   p_joint 1.470833e-03

Joint ci ratio: 2.036398e-01	ci left: 1.329320e-03	ci right 1.634425e-03	k: 369	n:250000
Cons ci ratio: 1.657638e-03	ci left: 9.564114e-01	ci right 9.580020e-01	k: 239303	n:250000
KS ci ratio: 3.210426e-01	ci left: 5.004892e-04	ci right 6.953922e-04	k: 148	n:250000
UGT1A9   250000 perm   77 sec   (3236 perm/sec)   p_kst 5.920000e-04   p_cons 9.572120e-01   p_joint 1.476000e-03

Joint ci ratio: 2.012097e-01	ci left: 1.311052e-03	ci right 1.607932e-03	k: 378	n:260000
Cons ci ratio: 1.625760e-03	ci left: 9.564111e-01	ci right 9.579710e-01	k: 248871	n:260000
KS ci ratio: 3.168193e-01	ci left: 4.953926e-04	ci right 6.852587e-04	k: 152	n:260000
UGT1A9   260000 perm   81 sec   (3196 perm/sec)   p_kst 5.846154e-04   p_cons 9.571962e-01   p_joint 1.453846e-03

Joint ci ratio: 1.986083e-01	ci left: 1.297677e-03	ci right 1.587269e-03	k: 388	n:270000
Cons ci ratio: 1.594427e-03	ci left: 9.564746e-01	ci right 9.580045e-01	k: 258456	n:270000
KS ci ratio: 3.127585e-01	ci left: 4.906891e-04	ci right 6.758605e-04	k: 156	n:270000
UGT1A9   270000 perm   86 sec   (3157 perm/sec)   p_kst 5.777778e-04   p_cons 9.572444e-01   p_joint 1.437037e-03

Joint ci ratio: 1.973474e-01	ci left: 1.268301e-03	ci right 1.549324e-03	k: 393	n:280000
Cons ci ratio: 1.565315e-03	ci left: 9.565086e-01	ci right 9.580105e-01	k: 268034	n:280000
KS ci ratio: 3.069482e-01	ci left: 4.929272e-04	ci right 6.748119e-04	k: 162	n:280000
UGT1A9   280000 perm   90 sec   (3120 perm/sec)   p_kst 5.785714e-04   p_cons 9.572643e-01   p_joint 1.403571e-03

Joint ci ratio: 1.944098e-01	ci left: 1.263916e-03	ci right 1.539306e-03	k: 405	n:290000
Cons ci ratio: 1.539555e-03	ci left: 9.564431e-01	ci right 9.579201e-01	k: 277584	n:290000
KS ci ratio: 3.032508e-01	ci left: 4.886669e-04	ci right 6.663886e-04	k: 166	n:290000
UGT1A9   290000 perm   94 sec   (3077 perm/sec)   p_kst 5.724138e-04   p_cons 9.571862e-01   p_joint 1.396552e-03

Joint ci ratio: 1.976080e-01	ci left: 1.180574e-03	ci right 1.442545e-03	k: 392	n:300000
Cons ci ratio: 1.512683e-03	ci left: 9.565099e-01	ci right 9.579612e-01	k: 287172	n:300000
KS ci ratio: 3.005646e-01	ci left: 4.816203e-04	ci right 6.549313e-04	k: 169	n:300000
UGT1A9   300000 perm   99 sec   (3041 perm/sec)   p_kst 5.633333e-04   p_cons 9.572400e-01   p_joint 1.306667e-03

Joint ci ratio: 1.464303e-01	ci left: 2.137534e-03	ci right 2.478328e-03	k: 714	n:310000
Cons ci ratio: 1.487931e-03	ci left: 9.565304e-01	ci right 9.579578e-01	k: 296747	n:310000
KS ci ratio: 2.953968e-01	ci left: 4.839925e-04	ci right 6.546017e-04	k: 175	n:310000
UGT1A9   310000 perm   103 sec   (3008 perm/sec)   p_kst 5.645161e-04   p_cons 9.572484e-01   p_joint 2.303226e-03

Joint ci ratio: 1.443266e-01	ci left: 2.133974e-03	ci right 2.468891e-03	k: 735	n:320000
Cons ci ratio: 1.464020e-03	ci left: 9.565686e-01	ci right 9.579731e-01	k: 306328	n:320000
KS ci ratio: 2.904866e-01	ci left: 4.862402e-04	ci right 6.542691e-04	k: 181	n:320000
UGT1A9   320000 perm   108 sec   (2974 perm/sec)   p_kst 5.656250e-04   p_cons 9.572750e-01   p_joint 2.296875e-03

Joint ci ratio: 1.422170e-01	ci left: 2.133585e-03	ci right 2.463131e-03	k: 757	n:330000
Cons ci ratio: 1.439782e-03	ci left: 9.566871e-01	ci right 9.580685e-01	k: 315936	n:330000
KS ci ratio: 2.865771e-01	ci left: 4.855608e-04	ci right 6.506878e-04	k: 186	n:330000
UGT1A9   330000 perm   112 sec   (2940 perm/sec)   p_kst 5.636364e-04   p_cons 9.573818e-01   p_joint 2.293939e-03

Joint ci ratio: 1.526693e-01	ci left: 1.787527e-03	ci right 2.085770e-03	k: 657	n:340000
Cons ci ratio: 1.417673e-03	ci left: 9.567425e-01	ci right 9.581027e-01	k: 325525	n:340000
KS ci ratio: 2.865795e-01	ci left: 4.712790e-04	ci right 6.315508e-04	k: 186	n:340000
UGT1A9   340000 perm   117 sec   (2903 perm/sec)   p_kst 5.470588e-04   p_cons 9.574265e-01   p_joint 1.932353e-03

Joint ci ratio: 1.508471e-01	ci left: 1.780432e-03	ci right 2.073626e-03	k: 673	n:350000
Cons ci ratio: 1.399097e-03	ci left: 9.566451e-01	ci right 9.579873e-01	k: 335062	n:350000
KS ci ratio: 2.806384e-01	ci left: 4.790459e-04	ci right 6.379845e-04	k: 194	n:350000
UGT1A9   350000 perm   122 sec   (2873 perm/sec)   p_kst 5.542857e-04   p_cons 9.573200e-01   p_joint 1.922857e-03

Joint ci ratio: 1.584514e-01	ci left: 1.562730e-03	ci right 1.834281e-03	k: 610	n:360000
Cons ci ratio: 1.379677e-03	ci left: 9.566457e-01	ci right 9.579692e-01	k: 344632	n:360000
KS ci ratio: 2.778042e-01	ci left: 4.760722e-04	ci right 6.321499e-04	k: 198	n:360000
UGT1A9   360000 perm   127 sec   (2843 perm/sec)   p_kst 5.500000e-04   p_cons 9.573111e-01   p_joint 1.694444e-03

Joint ci ratio: 1.569190e-01	ci left: 1.551646e-03	ci right 1.818418e-03	k: 622	n:370000
Cons ci ratio: 1.360324e-03	ci left: 9.566899e-01	ci right 9.579948e-01	k: 354218	n:370000
KS ci ratio: 2.750542e-01	ci left: 4.732668e-04	ci right 6.266232e-04	k: 202	n:370000
UGT1A9   370000 perm   132 sec   (2813 perm/sec)   p_kst 5.459459e-04   p_cons 9.573459e-01   p_joint 1.681081e-03

Joint ci ratio: 1.554302e-01	ci left: 1.541157e-03	ci right 1.803378e-03	k: 634	n:380000
Cons ci ratio: 1.341762e-03	ci left: 9.567319e-01	ci right 9.580190e-01	k: 363804	n:380000
KS ci ratio: 2.704306e-01	ci left: 4.779741e-04	ci right 6.298105e-04	k: 209	n:380000
UGT1A9   380000 perm   137 sec   (2784 perm/sec)   p_kst 5.500000e-04   p_cons 9.573789e-01   p_joint 1.668421e-03

Joint ci ratio: 1.545825e-01	ci left: 1.518892e-03	ci right 1.775783e-03	k: 641	n:390000
Cons ci ratio: 1.324772e-03	ci left: 9.567202e-01	ci right 9.579910e-01	k: 373370	n:390000
KS ci ratio: 2.697906e-01	ci left: 4.681085e-04	ci right 6.163994e-04	k: 210	n:390000
UGT1A9   390000 perm   142 sec   (2755 perm/sec)   p_kst 5.384615e-04   p_cons 9.573590e-01   p_joint 1.643590e-03

Joint ci ratio: 1.524597e-01	ci left: 1.524191e-03	ci right 1.778116e-03	k: 659	n:400000
Cons ci ratio: 1.308570e-03	ci left: 9.566991e-01	ci right 9.579543e-01	k: 382932	n:400000
KS ci ratio: 2.642133e-01	ci left: 4.774002e-04	ci right 6.249913e-04	k: 219	n:400000
UGT1A9   400000 perm   147 sec   (2727 perm/sec)   p_kst 5.475000e-04   p_cons 9.573300e-01   p_joint 1.647500e-03

Joint ci ratio: 1.636457e-01	ci left: 1.283189e-03	ci right 1.514193e-03	k: 572	n:410000
Cons ci ratio: 1.294029e-03	ci left: 9.566104e-01	ci right 9.578515e-01	k: 392466	n:410000
KS ci ratio: 2.612613e-01	ci left: 4.771483e-04	ci right 6.227441e-04	k: 224	n:410000
UGT1A9   410000 perm   152 sec   (2700 perm/sec)   p_kst 5.463415e-04   p_cons 9.572341e-01   p_joint 1.395122e-03

Joint ci ratio: 1.615447e-01	ci left: 1.286898e-03	ci right 1.515307e-03	k: 587	n:420000
Cons ci ratio: 1.278654e-03	ci left: 9.566099e-01	ci right 9.578362e-01	k: 402035	n:420000
KS ci ratio: 2.584061e-01	ci left: 4.769171e-04	ci right 6.205953e-04	k: 229	n:420000
UGT1A9   420000 perm   157 sec   (2674 perm/sec)   p_kst 5.452381e-04   p_cons 9.572262e-01   p_joint 1.397619e-03

Joint ci ratio: 1.625189e-01	ci left: 1.241349e-03	ci right 1.463132e-03	k: 580	n:430000
Cons ci ratio: 1.262630e-03	ci left: 9.566868e-01	ci right 9.578978e-01	k: 411637	n:430000
KS ci ratio: 2.540252e-01	ci left: 4.832362e-04	ci right 6.259593e-04	k: 237	n:430000
UGT1A9   430000 perm   162 sec   (2647 perm/sec)   p_kst 5.511628e-04   p_cons 9.572953e-01   p_joint 1.348837e-03

Joint ci ratio: 1.607308e-01	ci left: 1.241487e-03	ci right 1.460618e-03	k: 593	n:440000
Cons ci ratio: 1.249654e-03	ci left: 9.565978e-01	ci right 9.577962e-01	k: 421168	n:440000
KS ci ratio: 2.498599e-01	ci left: 4.892877e-04	ci right 6.310601e-04	k: 245	n:440000
UGT1A9   440000 perm   168 sec   (2621 perm/sec)   p_kst 5.568182e-04   p_cons 9.572000e-01   p_joint 1.347727e-03

Joint ci ratio: 1.605979e-01	ci left: 1.216030e-03	ci right 1.430473e-03	k: 594	n:450000
Cons ci ratio: 1.234852e-03	ci left: 9.566605e-01	ci right 9.578447e-01	k: 430765	n:450000
KS ci ratio: 2.483509e-01	ci left: 4.846650e-04	ci right 6.241188e-04	k: 248	n:450000
UGT1A9   450000 perm   173 sec   (2594 perm/sec)   p_kst 5.511111e-04   p_cons 9.572556e-01   p_joint 1.320000e-03

Joint ci ratio: 1.593976e-01	ci left: 1.208376e-03	ci right 1.419725e-03	k: 603	n:460000
Cons ci ratio: 1.220887e-03	ci left: 9.566986e-01	ci right 9.578695e-01	k: 440352	n:460000
KS ci ratio: 2.468689e-01	ci left: 4.802457e-04	ci right 6.174768e-04	k: 251	n:460000
UGT1A9   460000 perm   179 sec   (2564 perm/sec)   p_kst 5.456522e-04   p_cons 9.572870e-01   p_joint 1.310870e-03

Joint ci ratio: 1.573269e-01	ci left: 1.215360e-03	ci right 1.424908e-03	k: 619	n:470000
Cons ci ratio: 1.206473e-03	ci left: 9.567973e-01	ci right 9.579545e-01	k: 449968	n:470000
KS ci ratio: 2.435096e-01	ci left: 4.840065e-04	ci right 6.201457e-04	k: 258	n:470000
UGT1A9   470000 perm   185 sec   (2539 perm/sec)   p_kst 5.489362e-04   p_cons 9.573787e-01   p_joint 1.317021e-03

Joint ci ratio: 1.557031e-01	ci left: 1.216062e-03	ci right 1.423365e-03	k: 632	n:480000
Cons ci ratio: 1.194898e-03	ci left: 9.567305e-01	ci right 9.578764e-01	k: 459507	n:480000
KS ci ratio: 2.411927e-01	ci left: 4.837071e-04	ci right 6.182740e-04	k: 263	n:480000
UGT1A9   480000 perm   191 sec   (2514 perm/sec)   p_kst 5.479167e-04   p_cons 9.573063e-01   p_joint 1.316667e-03

Joint ci ratio: 1.547292e-01	ci left: 1.206937e-03	ci right 1.411278e-03	k: 640	n:490000
Cons ci ratio: 1.182349e-03	ci left: 9.567569e-01	ci right 9.578908e-01	k: 469090	n:490000
KS ci ratio: 2.393864e-01	ci left: 4.815073e-04	ci right 6.143101e-04	k: 267	n:490000
UGT1A9   490000 perm   197 sec   (2490 perm/sec)   p_kst 5.448980e-04   p_cons 9.573265e-01   p_joint 1.306122e-03

Joint ci ratio: 1.552169e-01	ci left: 1.175107e-03	ci right 1.374744e-03	k: 636	n:500000
Cons ci ratio: 1.169985e-03	ci left: 9.567963e-01	ci right 9.579184e-01	k: 478680	n:500000
KS ci ratio: 2.367507e-01	ci left: 4.831615e-04	ci right 6.147383e-04	k: 273	n:500000
UGT1A9   500000 perm   203 sec   (2467 perm/sec)   p_kst 5.460000e-04   p_cons 9.573600e-01   p_joint 1.272000e-03

Joint ci ratio: 1.536569e-01	ci left: 1.176571e-03	ci right 1.374263e-03	k: 649	n:510000
Cons ci ratio: 1.158168e-03	ci left: 9.568224e-01	ci right 9.579332e-01	k: 488264	n:510000
KS ci ratio: 2.342003e-01	ci left: 4.847584e-04	ci right 6.151420e-04	k: 279	n:510000
UGT1A9   510000 perm   209 sec   (2444 perm/sec)   p_kst 5.470588e-04   p_cons 9.573804e-01   p_joint 1.272549e-03

Joint ci ratio: 1.520282e-01	ci left: 1.179838e-03	ci right 1.375787e-03	k: 663	n:520000
Cons ci ratio: 1.147675e-03	ci left: 9.567779e-01	ci right 9.578785e-01	k: 497812	n:520000
KS ci ratio: 2.325455e-01	ci left: 4.826787e-04	ci right 6.114537e-04	k: 283	n:520000
UGT1A9   520000 perm   215 sec   (2422 perm/sec)   p_kst 5.442308e-04   p_cons 9.573308e-01   p_joint 1.275000e-03

Joint ci ratio: 1.498978e-01	ci left: 1.192072e-03	ci right 1.387030e-03	k: 682	n:530000
Cons ci ratio: 1.137329e-03	ci left: 9.567446e-01	ci right 9.578353e-01	k: 507365	n:530000
KS ci ratio: 2.297312e-01	ci left: 4.860145e-04	ci right 6.138877e-04	k: 290	n:530000
UGT1A9   530000 perm   221 sec   (2400 perm/sec)   p_kst 5.471698e-04   p_cons 9.572925e-01   p_joint 1.286792e-03

Joint ci ratio: 1.500096e-01	ci left: 1.168213e-03	ci right 1.359424e-03	k: 681	n:540000
Cons ci ratio: 1.125930e-03	ci left: 9.568095e-01	ci right 9.578893e-01	k: 516970	n:540000
KS ci ratio: 2.273987e-01	ci left: 4.874892e-04	ci right 6.142655e-04	k: 296	n:540000
UGT1A9   540000 perm   227 sec   (2378 perm/sec)   p_kst 5.481481e-04   p_cons 9.573519e-01   p_joint 1.261111e-03

Joint ci ratio: 1.276789e-01	ci left: 1.601651e-03	ci right 1.821833e-03	k: 940	n:550000
Cons ci ratio: 1.116256e-03	ci left: 9.567697e-01	ci right 9.578401e-01	k: 526519	n:550000
KS ci ratio: 2.251359e-01	ci left: 4.889166e-04	ci right 6.146234e-04	k: 302	n:550000
UGT1A9   550000 perm   233 sec   (2356 perm/sec)   p_kst 5.490909e-04   p_cons 9.573073e-01   p_joint 1.709091e-03

Joint ci ratio: 1.263430e-01	ci left: 1.607630e-03	ci right 1.826148e-03	k: 960	n:560000
Cons ci ratio: 1.105641e-03	ci left: 9.568193e-01	ci right 9.578795e-01	k: 536117	n:560000
KS ci ratio: 2.233011e-01	ci left: 4.886131e-04	ci right 6.130772e-04	k: 307	n:560000
UGT1A9   560000 perm   240 sec   (2335 perm/sec)   p_kst 5.482143e-04   p_cons 9.573518e-01   p_joint 1.714286e-03

Joint ci ratio: 1.258213e-01	ci left: 1.593017e-03	ci right 1.808589e-03	k: 968	n:570000
Cons ci ratio: 1.095370e-03	ci left: 9.568637e-01	ci right 9.579141e-01	k: 545713	n:570000
KS ci ratio: 2.218654e-01	ci left: 4.866671e-04	ci right 6.097297e-04	k: 311	n:570000
UGT1A9   570000 perm   247 sec   (2311 perm/sec)   p_kst 5.456140e-04   p_cons 9.573912e-01   p_joint 1.698246e-03

Joint ci ratio: 1.321933e-01	ci left: 1.413707e-03	ci right 1.615463e-03	k: 877	n:580000
Cons ci ratio: 1.022997e-03	ci left: 9.615065e-01	ci right 9.624923e-01	k: 557961	n:580000
KS ci ratio: 2.204570e-01	ci left: 4.847908e-04	ci right 6.064952e-04	k: 315	n:580000
UGT1A9   580000 perm   253 sec   (2292 perm/sec)   p_kst 5.431034e-04   p_cons 9.620017e-01   p_joint 1.512069e-03

Joint ci ratio: 1.315216e-01	ci left: 1.404496e-03	ci right 1.603840e-03	k: 886	n:590000
Cons ci ratio: 1.014667e-03	ci left: 9.614834e-01	ci right 9.624612e-01	k: 567565	n:590000
KS ci ratio: 2.183933e-01	ci left: 4.861847e-04	ci right 6.069430e-04	k: 321	n:590000
UGT1A9   590000 perm   260 sec   (2271 perm/sec)   p_kst 5.440678e-04   p_cons 9.619746e-01   p_joint 1.501695e-03

Joint ci ratio: 1.300629e-01	ci left: 1.413331e-03	ci right 1.611532e-03	k: 906	n:600000
Cons ci ratio: 1.006009e-03	ci left: 9.614997e-01	ci right 9.624691e-01	k: 577192	n:600000
KS ci ratio: 2.157294e-01	ci left: 4.906902e-04	ci right 6.108842e-04	k: 329	n:600000
UGT1A9   600000 perm   266 sec   (2252 perm/sec)   p_kst 5.483333e-04   p_cons 9.619867e-01   p_joint 1.510000e-03

Joint ci ratio: 1.291410e-01	ci left: 1.410782e-03	ci right 1.607116e-03	k: 919	n:610000
Cons ci ratio: 9.982401e-04	ci left: 9.614661e-01	ci right 9.624279e-01	k: 586789	n:610000
KS ci ratio: 2.147559e-01	ci left: 4.872990e-04	ci right 6.060526e-04	k: 332	n:610000
UGT1A9   610000 perm   273 sec   (2233 perm/sec)   p_kst 5.442623e-04   p_cons 9.619492e-01   p_joint 1.506557e-03

Joint ci ratio: 1.312304e-01	ci left: 1.342773e-03	ci right 1.532902e-03	k: 890	n:620000
Cons ci ratio: 9.897093e-04	ci left: 9.615033e-01	ci right 9.624569e-01	k: 596429	n:620000
KS ci ratio: 2.122213e-01	ci left: 4.916528e-04	ci right 6.098695e-04	k: 340	n:620000
UGT1A9   620000 perm   280 sec   (2214 perm/sec)   p_kst 5.483871e-04   p_cons 9.619823e-01   p_joint 1.435484e-03

Joint ci ratio: 1.304281e-01	ci left: 1.338348e-03	ci right 1.526602e-03	k: 901	n:630000
Cons ci ratio: 9.821811e-04	ci left: 9.614802e-01	ci right 9.624266e-01	k: 606032	n:630000
KS ci ratio: 2.106825e-01	ci left: 4.913650e-04	ci right 6.085452e-04	k: 345	n:630000
UGT1A9   630000 perm   287 sec   (2196 perm/sec)   p_kst 5.476190e-04   p_cons 9.619556e-01   p_joint 1.430159e-03

Joint ci ratio: 1.293569e-01	ci left: 1.340112e-03	ci right 1.526947e-03	k: 916	n:640000
Cons ci ratio: 9.744889e-04	ci left: 9.614831e-01	ci right 9.624221e-01	k: 615651	n:640000
KS ci ratio: 2.094753e-01	ci left: 4.896086e-04	ci right 6.056151e-04	k: 349	n:640000
UGT1A9   640000 perm   294 sec   (2177 perm/sec)   p_kst 5.453125e-04   p_cons 9.619547e-01   p_joint 1.431250e-03

Joint ci ratio: 1.290767e-01	ci left: 1.325450e-03	ci right 1.509809e-03	k: 920	n:650000
Cons ci ratio: 9.670153e-04	ci left: 9.614828e-01	ci right 9.624146e-01	k: 625268	n:650000
KS ci ratio: 2.082887e-01	ci left: 4.879081e-04	ci right 6.027733e-04	k: 353	n:650000
UGT1A9   650000 perm   301 sec   (2159 perm/sec)   p_kst 5.430769e-04   p_cons 9.619508e-01   p_joint 1.415385e-03

Joint ci ratio: 1.296432e-01	ci left: 1.293637e-03	ci right 1.474422e-03	k: 912	n:660000
Cons ci ratio: 9.597904e-04	ci left: 9.614765e-01	ci right 9.624013e-01	k: 634881	n:660000
KS ci ratio: 2.062592e-01	ci left: 4.905712e-04	ci right 6.047960e-04	k: 360	n:660000
UGT1A9   660000 perm   308 sec   (2141 perm/sec)   p_kst 5.454545e-04   p_cons 9.619409e-01   p_joint 1.381818e-03

Joint ci ratio: 1.290795e-01	ci left: 1.285882e-03	ci right 1.464742e-03	k: 920	n:670000
Cons ci ratio: 9.525892e-04	ci left: 9.614809e-01	ci right 9.623987e-01	k: 644501	n:670000
KS ci ratio: 2.048456e-01	ci left: 4.903278e-04	ci right 6.036155e-04	k: 365	n:670000
UGT1A9   670000 perm   316 sec   (2120 perm/sec)   p_kst 5.447761e-04   p_cons 9.619418e-01   p_joint 1.373134e-03

Joint ci ratio: 1.279041e-01	ci left: 1.291169e-03	ci right 1.469005e-03	k: 937	n:680000
Cons ci ratio: 9.453197e-04	ci left: 9.615029e-01	ci right 9.624137e-01	k: 654133	n:680000
KS ci ratio: 2.034606e-01	ci left: 4.900941e-04	ci right 6.024671e-04	k: 370	n:680000
UGT1A9   680000 perm   323 sec   (2103 perm/sec)   p_kst 5.441176e-04   p_cons 9.619603e-01   p_joint 1.377941e-03

Joint ci ratio: 1.270270e-01	ci left: 1.290696e-03	ci right 1.467156e-03	k: 950	n:690000
Cons ci ratio: 9.388457e-04	ci left: 9.614748e-01	ci right 9.623793e-01	k: 663731	n:690000
KS ci ratio: 2.018350e-01	ci left: 4.912458e-04	ci right 6.028720e-04	k: 376	n:690000
UGT1A9   690000 perm   331 sec   (2083 perm/sec)   p_kst 5.449275e-04   p_cons 9.619290e-01   p_joint 1.376812e-03

Joint ci ratio: 1.265627e-01	ci left: 1.281940e-03	ci right 1.456514e-03	k: 957	n:700000
Cons ci ratio: 9.317024e-04	ci left: 9.615107e-01	ci right 9.624083e-01	k: 673373	n:700000
KS ci ratio: 2.015685e-01	ci left: 4.855842e-04	ci right 5.957604e-04	k: 377	n:700000
UGT1A9   700000 perm   339 sec   (2066 perm/sec)   p_kst 5.385714e-04   p_cons 9.619614e-01   p_joint 1.367143e-03

Joint ci ratio: 1.368132e-01	ci left: 1.075904e-03	ci right 1.235254e-03	k: 819	n:710000
Cons ci ratio: 9.254668e-04	ci left: 9.614861e-01	ci right 9.623777e-01	k: 682973	n:710000
KS ci ratio: 1.994684e-01	ci left: 4.894470e-04	ci right 5.992018e-04	k: 385	n:710000
UGT1A9   710000 perm   346 sec   (2050 perm/sec)   p_kst 5.422535e-04   p_cons 9.619338e-01   p_joint 1.153521e-03

Joint ci ratio: 1.360687e-01	ci left: 1.073034e-03	ci right 1.231024e-03	k: 828	n:720000
Cons ci ratio: 9.186745e-04	ci left: 9.615167e-01	ci right 9.624018e-01	k: 692612	n:720000
KS ci ratio: 1.979359e-01	ci left: 4.905679e-04	ci right 5.996269e-04	k: 391	n:720000
UGT1A9   720000 perm   354 sec   (2034 perm/sec)   p_kst 5.430556e-04   p_cons 9.619611e-01   p_joint 1.150000e-03

Joint ci ratio: 1.354172e-01	ci left: 1.068921e-03	ci right 1.225492e-03	k: 836	n:730000
Cons ci ratio: 9.122000e-04	ci left: 9.615327e-01	ci right 9.624116e-01	k: 702241	n:730000
KS ci ratio: 1.979366e-01	ci left: 4.838477e-04	ci right 5.914131e-04	k: 391	n:730000
UGT1A9   730000 perm   362 sec   (2018 perm/sec)   p_kst 5.356164e-04   p_cons 9.619740e-01   p_joint 1.145205e-03

Joint ci ratio: 1.344568e-01	ci left: 1.070145e-03	ci right 1.225694e-03	k: 848	n:740000
Cons ci ratio: 9.060779e-04	ci left: 9.615306e-01	ci right 9.624036e-01	k: 711857	n:740000
KS ci ratio: 1.959469e-01	ci left: 4.875870e-04	ci right 5.947641e-04	k: 399	n:740000
UGT1A9   740000 perm   370 sec   (2002 perm/sec)   p_kst 5.391892e-04   p_cons 9.619689e-01   p_joint 1.145946e-03

Joint ci ratio: 1.339846e-01	ci left: 1.063608e-03	ci right 1.217620e-03	k: 854	n:750000
Cons ci ratio: 9.005201e-04	ci left: 9.614924e-01	ci right 9.623600e-01	k: 721446	n:750000
KS ci ratio: 1.952165e-01	ci left: 4.848899e-04	ci right 5.910296e-04	k: 402	n:750000
UGT1A9   750000 perm   377 sec   (1987 perm/sec)   p_kst 5.360000e-04   p_cons 9.619280e-01   p_joint 1.138667e-03

Joint ci ratio: 1.331310e-01	ci left: 1.063603e-03	ci right 1.216556e-03	k: 865	n:760000
Cons ci ratio: 8.946929e-04	ci left: 9.614857e-01	ci right 9.623476e-01	k: 731058	n:760000
KS ci ratio: 1.940167e-01	ci left: 4.847682e-04	ci right 5.901520e-04	k: 407	n:760000
UGT1A9   760000 perm   386 sec   (1971 perm/sec)   p_kst 5.355263e-04   p_cons 9.619184e-01   p_joint 1.138158e-03

Joint ci ratio: 1.324448e-01	ci left: 1.061090e-03	ci right 1.212833e-03	k: 874	n:770000
Cons ci ratio: 8.886936e-04	ci left: 9.615027e-01	ci right 9.623588e-01	k: 740688	n:770000
KS ci ratio: 1.937799e-01	ci left: 4.797080e-04	ci right 5.838496e-04	k: 408	n:770000
UGT1A9   770000 perm   394 sec   (1956 perm/sec)   p_kst 5.298701e-04   p_cons 9.619325e-01   p_joint 1.135065e-03

Joint ci ratio: 1.147620e-01	ci left: 1.407858e-03	ci right 1.580494e-03	k: 1164	n:780000
Cons ci ratio: 9.097065e-04	ci left: 9.592483e-01	ci right 9.601226e-01	k: 748556	n:780000
KS ci ratio: 1.923739e-01	ci left: 4.808784e-04	ci right 5.844280e-04	k: 414	n:780000
UGT1A9   780000 perm   402 sec   (1941 perm/sec)   p_kst 5.307692e-04   p_cons 9.596872e-01   p_joint 1.492308e-03

Joint ci ratio: 1.147138e-01	ci left: 1.391265e-03	ci right 1.561791e-03	k: 1165	n:790000
Cons ci ratio: 9.040911e-04	ci left: 9.592373e-01	ci right 9.601062e-01	k: 758142	n:790000
KS ci ratio: 1.905458e-01	ci left: 4.844327e-04	ci right 5.876414e-04	k: 422	n:790000
UGT1A9   790000 perm   410 sec   (1927 perm/sec)   p_kst 5.341772e-04   p_cons 9.596734e-01   p_joint 1.474684e-03

Joint ci ratio: 1.137421e-01	ci left: 1.398161e-03	ci right 1.567982e-03	k: 1185	n:800000
Cons ci ratio: 8.978963e-04	ci left: 9.592856e-01	ci right 9.601486e-01	k: 767775	n:800000
KS ci ratio: 1.892085e-01	ci left: 4.855208e-04	ci right 5.881520e-04	k: 428	n:800000
UGT1A9   800000 perm   418 sec   (1913 perm/sec)   p_kst 5.350000e-04   p_cons 9.597187e-01   p_joint 1.481250e-03

Joint ci ratio: 1.128885e-01	ci left: 1.402492e-03	ci right 1.571476e-03	k: 1203	n:810000
Cons ci ratio: 8.923391e-04	ci left: 9.592881e-01	ci right 9.601457e-01	k: 777372	n:810000
KS ci ratio: 1.872541e-01	ci left: 4.901144e-04	ci right 5.925248e-04	k: 437	n:810000
UGT1A9   810000 perm   426 sec   (1899 perm/sec)   p_kst 5.395062e-04   p_cons 9.597185e-01   p_joint 1.485185e-03

Joint ci ratio: 1.122840e-01	ci left: 1.400795e-03	ci right 1.568611e-03	k: 1216	n:820000
Cons ci ratio: 8.867019e-04	ci left: 9.593064e-01	ci right 9.601586e-01	k: 786982	n:820000
KS ci ratio: 1.868284e-01	ci left: 4.864621e-04	ci right 5.878521e-04	k: 439	n:820000
UGT1A9   820000 perm   435 sec   (1886 perm/sec)   p_kst 5.353659e-04   p_cons 9.597341e-01   p_joint 1.482927e-03

Joint ci ratio: 1.115078e-01	ci left: 1.403827e-03	ci right 1.570767e-03	k: 1233	n:830000
Cons ci ratio: 8.809364e-04	ci left: 9.593449e-01	ci right 9.601916e-01	k: 796609	n:830000
KS ci ratio: 1.861950e-01	ci left: 4.840467e-04	ci right 5.845526e-04	k: 442	n:830000
UGT1A9   830000 perm   443 sec   (1872 perm/sec)   p_kst 5.325301e-04   p_cons 9.597699e-01   p_joint 1.485542e-03

Joint ci ratio: 1.107918e-01	ci left: 1.405633e-03	ci right 1.571645e-03	k: 1249	n:840000
Cons ci ratio: 8.751868e-04	ci left: 9.593909e-01	ci right 9.602321e-01	k: 806243	n:840000
KS ci ratio: 1.853602e-01	ci left: 4.828247e-04	ci right 5.825768e-04	k: 446	n:840000
UGT1A9   840000 perm   452 sec   (1859 perm/sec)   p_kst 5.309524e-04   p_cons 9.598131e-01   p_joint 1.486905e-03

Joint ci ratio: 1.130807e-01	ci left: 1.331917e-03	ci right 1.492688e-03	k: 1199	n:850000
Cons ci ratio: 8.697862e-04	ci left: 9.594145e-01	ci right 9.602506e-01	k: 815859	n:850000
KS ci ratio: 1.845365e-01	ci left: 4.816324e-04	ci right 5.806465e-04	k: 450	n:850000
UGT1A9   850000 perm   461 sec   (1845 perm/sec)   p_kst 5.294118e-04   p_cons 9.598341e-01   p_joint 1.410588e-03

Joint ci ratio: 1.126127e-01	ci left: 1.327729e-03	ci right 1.487288e-03	k: 1209	n:860000
Cons ci ratio: 8.647318e-04	ci left: 9.594154e-01	ci right 9.602466e-01	k: 825456	n:860000
KS ci ratio: 1.831207e-01	ci left: 4.837971e-04	ci right 5.824084e-04	k: 457	n:860000
UGT1A9   860000 perm   469 sec   (1832 perm/sec)   p_kst 5.313953e-04   p_cons 9.598326e-01   p_joint 1.405814e-03

Joint ci ratio: 1.122427e-01	ci left: 1.321404e-03	ci right 1.479647e-03	k: 1217	n:870000
Cons ci ratio: 8.598287e-04	ci left: 9.594105e-01	ci right 9.602370e-01	k: 835048	n:870000
KS ci ratio: 1.829216e-01	ci left: 4.793328e-04	ci right 5.769162e-04	k: 458	n:870000
UGT1A9   870000 perm   478 sec   (1820 perm/sec)   p_kst 5.264368e-04   p_cons 9.598253e-01   p_joint 1.398851e-03

Joint ci ratio: 1.115578e-01	ci left: 1.322957e-03	ci right 1.480355e-03	k: 1232	n:880000
Cons ci ratio: 8.547183e-04	ci left: 9.594320e-01	ci right 9.602536e-01	k: 844663	n:880000
KS ci ratio: 1.821298e-01	ci left: 4.782236e-04	ci right 5.751133e-04	k: 462	n:880000
UGT1A9   880000 perm   487 sec   (1807 perm/sec)   p_kst 5.250000e-04   p_cons 9.598443e-01   p_joint 1.400000e-03

Joint ci ratio: 1.111980e-01	ci left: 1.316830e-03	ci right 1.472961e-03	k: 1240	n:890000
Cons ci ratio: 8.500445e-04	ci left: 9.594215e-01	ci right 9.602385e-01	k: 854250	n:890000
KS ci ratio: 1.815428e-01	ci left: 4.760676e-04	ci right 5.721755e-04	k: 465	n:890000
UGT1A9   890000 perm   496 sec   (1794 perm/sec)   p_kst 5.224719e-04   p_cons 9.598315e-01   p_joint 1.393258e-03

Joint ci ratio: 1.105319e-01	ci left: 1.318403e-03	ci right 1.473723e-03	k: 1255	n:900000
Cons ci ratio: 8.452395e-04	ci left: 9.594301e-01	ci right 9.602425e-01	k: 863854	n:900000
KS ci ratio: 1.803852e-01	ci left: 4.771427e-04	ci right 5.727863e-04	k: 471	n:900000
UGT1A9   900000 perm   505 sec   (1781 perm/sec)   p_kst 5.233333e-04   p_cons 9.598378e-01   p_joint 1.394444e-03

Joint ci ratio: 1.317797e-01	ci left: 9.074038e-04	ci right 1.036466e-03	k: 883	n:910000
Cons ci ratio: 8.928288e-04	ci left: 9.544937e-01	ci right 9.553474e-01	k: 868979	n:910000
KS ci ratio: 1.794373e-01	ci left: 4.771464e-04	ci right 5.722336e-04	k: 476	n:910000
UGT1A9   910000 perm   514 sec   (1769 perm/sec)   p_kst 5.230769e-04   p_cons 9.549220e-01   p_joint 9.703297e-04

Joint ci ratio: 1.311876e-01	ci left: 9.059503e-04	ci right 1.034182e-03	k: 891	n:920000
Cons ci ratio: 8.879656e-04	ci left: 9.544958e-01	ci right 9.553448e-01	k: 878528	n:920000
KS ci ratio: 1.788759e-01	ci left: 4.750747e-04	ci right 5.694207e-04	k: 479	n:920000
UGT1A9   920000 perm   524 sec   (1757 perm/sec)   p_kst 5.206522e-04   p_cons 9.549217e-01   p_joint 9.684783e-04

Joint ci ratio: 1.343934e-01	ci left: 8.525461e-04	ci right 9.764028e-04	k: 849	n:930000
Cons ci ratio: 8.833464e-04	ci left: 9.544817e-01	ci right 9.553262e-01	k: 888062	n:930000
KS ci ratio: 1.785047e-01	ci left: 4.720206e-04	ci right 5.655446e-04	k: 481	n:930000
UGT1A9   930000 perm   533 sec   (1746 perm/sec)   p_kst 5.172043e-04   p_cons 9.549054e-01   p_joint 9.129032e-04

Joint ci ratio: 1.340001e-01	ci left: 8.486169e-04	ci right 9.715133e-04	k: 854	n:940000
Cons ci ratio: 8.786465e-04	ci left: 9.544828e-01	ci right 9.553229e-01	k: 897610	n:940000
KS ci ratio: 1.777687e-01	ci left: 4.710647e-04	ci right 5.639731e-04	k: 485	n:940000
UGT1A9   940000 perm   542 sec   (1734 perm/sec)   p_kst 5.159574e-04   p_cons 9.549043e-01   p_joint 9.085106e-04

Joint ci ratio: 1.331462e-01	ci left: 8.508762e-04	ci right 9.732524e-04	k: 865	n:950000
Cons ci ratio: 8.739782e-04	ci left: 9.544882e-01	ci right 9.553238e-01	k: 907162	n:950000
KS ci ratio: 1.765020e-01	ci left: 4.731479e-04	ci right 5.657312e-04	k: 492	n:950000
UGT1A9   950000 perm   552 sec   (1722 perm/sec)   p_kst 5.178947e-04   p_cons 9.549074e-01   p_joint 9.105263e-04

Joint ci ratio: 1.336888e-01	ci left: 8.349641e-04	ci right 9.555800e-04	k: 858	n:960000
Cons ci ratio: 8.694886e-04	ci left: 9.544830e-01	ci right 9.553143e-01	k: 916704	n:960000
KS ci ratio: 1.761454e-01	ci left: 4.702106e-04	ci right 5.620135e-04	k: 494	n:960000
UGT1A9   960000 perm   561 sec   (1711 perm/sec)   p_kst 5.145833e-04   p_cons 9.549000e-01   p_joint 8.937500e-04

Joint ci ratio: 1.329939e-01	ci left: 8.353251e-04	ci right 9.553164e-04	k: 867	n:970000
Cons ci ratio: 8.652331e-04	ci left: 9.544613e-01	ci right 9.552885e-01	k: 926230	n:970000
KS ci ratio: 1.750874e-01	ci left: 4.712767e-04	ci right 5.626767e-04	k: 500	n:970000
UGT1A9   970000 perm   571 sec   (1699 perm/sec)   p_kst 5.154639e-04   p_cons 9.548763e-01   p_joint 8.938144e-04

Joint ci ratio: 1.121133e-01	ci left: 1.176054e-03	ci right 1.316717e-03	k: 1220	n:980000
Cons ci ratio: 8.611207e-04	ci left: 9.544319e-01	ci right 9.552552e-01	k: 935748	n:980000
KS ci ratio: 1.745657e-01	ci left: 4.693950e-04	ci right 5.601302e-04	k: 503	n:980000
UGT1A9   980000 perm   580 sec   (1688 perm/sec)   p_kst 5.132653e-04   p_cons 9.548449e-01   p_joint 1.244898e-03

Joint ci ratio: 1.114760e-01	ci left: 1.177920e-03	ci right 1.317953e-03	k: 1234	n:990000
Cons ci ratio: 8.567750e-04	ci left: 9.544326e-01	ci right 9.552516e-01	k: 945295	n:990000
KS ci ratio: 1.737062e-01	ci left: 4.694841e-04	ci right 5.597427e-04	k: 508	n:990000
UGT1A9   990000 perm   590 sec   (1677 perm/sec)   p_kst 5.131313e-04   p_cons 9.548434e-01   p_joint 1.246465e-03

Joint ci ratio: 1.037328e-01	ci left: 1.352013e-03	ci right 1.500899e-03	k: 1425	n:1000000
Cons ci ratio: 8.520990e-04	ci left: 9.544734e-01	ci right 9.552880e-01	k: 954882	n:1000000
KS ci ratio: 1.723567e-01	ci left: 4.724428e-04	ci right 5.624913e-04	k: 516	n:1000000
UGT1A9   1000000 perm   600 sec   (1666 perm/sec)   p_kst 5.160000e-04   p_cons 9.548820e-01   p_joint 1.425000e-03

Joint ci ratio: 1.032992e-01	ci left: 1.350201e-03	ci right 1.498227e-03	k: 1437	n:1010000
Cons ci ratio: 8.474494e-04	ci left: 9.545183e-01	ci right 9.553286e-01	k: 964474	n:1010000
KS ci ratio: 1.720246e-01	ci left: 4.696600e-04	ci right 5.589876e-04	k: 518	n:1010000
UGT1A9   1010000 perm   610 sec   (1656 perm/sec)   p_kst 5.128713e-04   p_cons 9.549248e-01   p_joint 1.422772e-03

Joint ci ratio: 1.034803e-01	ci left: 1.332188e-03	ci right 1.478510e-03	k: 1432	n:1020000
Cons ci ratio: 8.434889e-04	ci left: 9.544994e-01	ci right 9.553058e-01	k: 974002	n:1020000
KS ci ratio: 1.710387e-01	ci left: 4.706853e-04	ci right 5.596420e-04	k: 524	n:1020000
UGT1A9   1020000 perm   620 sec   (1645 perm/sec)   p_kst 5.137255e-04   p_cons 9.549039e-01   p_joint 1.403922e-03

Joint ci ratio: 1.052233e-01	ci left: 1.274811e-03	ci right 1.417337e-03	k: 1385	n:1030000
Cons ci ratio: 8.393752e-04	ci left: 9.545023e-01	ci right 9.553048e-01	k: 983552	n:1030000
KS ci ratio: 1.699096e-01	ci left: 4.726217e-04	ci right 5.612943e-04	k: 531	n:1030000
UGT1A9   1030000 perm   630 sec   (1635 perm/sec)   p_kst 5.155340e-04   p_cons 9.549049e-01   p_joint 1.344660e-03

Joint ci ratio: 1.049212e-01	ci left: 1.270044e-03	ci right 1.411603e-03	k: 1393	n:1040000
Cons ci ratio: 8.352931e-04	ci left: 9.545081e-01	ci right 9.553067e-01	k: 993105	n:1040000
KS ci ratio: 1.692745e-01	ci left: 4.717602e-04	ci right 5.599065e-04	k: 535	n:1040000
UGT1A9   1040000 perm   640 sec   (1625 perm/sec)   p_kst 5.144231e-04   p_cons 9.549087e-01   p_joint 1.339423e-03

Joint ci ratio: 1.051866e-01	ci left: 1.251456e-03	ci right 1.391318e-03	k: 1386	n:1050000
Cons ci ratio: 8.312975e-04	ci left: 9.545109e-01	ci right 9.553056e-01	k: 1002655	n:1050000
KS ci ratio: 1.680250e-01	ci left: 4.745648e-04	ci right 5.625144e-04	k: 543	n:1050000
UGT1A9   1050000 perm   650 sec   (1615 perm/sec)   p_kst 5.171429e-04   p_cons 9.549095e-01   p_joint 1.320000e-03

Joint ci ratio: 1.048472e-01	ci left: 1.247917e-03	ci right 1.386906e-03	k: 1395	n:1060000
Cons ci ratio: 8.272953e-04	ci left: 9.545203e-01	ci right 9.553112e-01	k: 1012212	n:1060000
KS ci ratio: 1.677172e-01	ci left: 4.718952e-04	ci right 5.591737e-04	k: 545	n:1060000
UGT1A9   1060000 perm   660 sec   (1606 perm/sec)   p_kst 5.141509e-04   p_cons 9.549170e-01   p_joint 1.316038e-03

Joint ci ratio: 1.047353e-01	ci left: 1.238984e-03	ci right 1.376822e-03	k: 1398	n:1070000
Cons ci ratio: 8.233592e-04	ci left: 9.545286e-01	ci right 9.553157e-01	k: 1021768	n:1070000
KS ci ratio: 1.669545e-01	ci left: 4.719622e-04	ci right 5.588162e-04	k: 550	n:1070000
UGT1A9   1070000 perm   670 sec   (1596 perm/sec)   p_kst 5.140187e-04   p_cons 9.549234e-01   p_joint 1.306542e-03

Joint ci ratio: 1.042151e-01	ci left: 1.240136e-03	ci right 1.377375e-03	k: 1412	n:1080000
Cons ci ratio: 8.195669e-04	ci left: 9.545274e-01	ci right 9.553109e-01	k: 1031314	n:1080000
KS ci ratio: 1.657553e-01	ci left: 4.746912e-04	ci right 5.613574e-04	k: 558	n:1080000
UGT1A9   1080000 perm   681 sec   (1587 perm/sec)   p_kst 5.166667e-04   p_cons 9.549204e-01   p_joint 1.307407e-03

Joint ci ratio: 1.038119e-01	ci left: 1.238588e-03	ci right 1.375093e-03	k: 1423	n:1090000
Cons ci ratio: 8.157831e-04	ci left: 9.545309e-01	ci right 9.553108e-01	k: 1040865	n:1090000
KS ci ratio: 1.648728e-01	ci left: 4.756131e-04	ci right 5.619394e-04	k: 564	n:1090000
UGT1A9   1090000 perm   691 sec   (1578 perm/sec)   p_kst 5.174312e-04   p_cons 9.549220e-01   p_joint 1.305505e-03

Joint ci ratio: 1.034133e-01	ci left: 1.237069e-03	ci right 1.372851e-03	k: 1434	n:1100000
Cons ci ratio: 8.116910e-04	ci left: 9.545726e-01	ci right 9.553486e-01	k: 1050458	n:1100000
KS ci ratio: 1.642924e-01	ci left: 4.747759e-04	ci right 5.606169e-04	k: 568	n:1100000
UGT1A9   1100000 perm   701 sec   (1569 perm/sec)   p_kst 5.163636e-04   p_cons 9.549618e-01   p_joint 1.303636e-03

Joint ci ratio: 1.027351e-01	ci left: 1.242600e-03	ci right 1.378041e-03	k: 1453	n:1110000
Cons ci ratio: 8.079809e-04	ci left: 9.545792e-01	ci right 9.553517e-01	k: 1060013	n:1110000
KS ci ratio: 1.631492e-01	ci left: 4.774107e-04	ci right 5.630685e-04	k: 576	n:1110000
UGT1A9   1110000 perm   712 sec   (1560 perm/sec)   p_kst 5.189189e-04   p_cons 9.549667e-01   p_joint 1.309009e-03

Joint ci ratio: 1.022092e-01	ci left: 1.244555e-03	ci right 1.379473e-03	k: 1468	n:1120000
Cons ci ratio: 8.042627e-04	ci left: 9.545920e-01	ci right 9.553610e-01	k: 1069575	n:1120000
KS ci ratio: 1.625867e-01	ci left: 4.765739e-04	ci right 5.617580e-04	k: 580	n:1120000
UGT1A9   1120000 perm   723 sec   (1550 perm/sec)   p_kst 5.178571e-04   p_cons 9.549777e-01   p_joint 1.310714e-03

Joint ci ratio: 1.018288e-01	ci left: 1.243028e-03	ci right 1.377248e-03	k: 1479	n:1130000
Cons ci ratio: 8.007354e-04	ci left: 9.545895e-01	ci right 9.553551e-01	k: 1079120	n:1130000
KS ci ratio: 1.620300e-01	ci left: 4.757525e-04	ci right 5.604702e-04	k: 584	n:1130000
UGT1A9   1130000 perm   733 sec   (1541 perm/sec)   p_kst 5.168142e-04   p_cons 9.549735e-01   p_joint 1.308850e-03

Joint ci ratio: 1.016918e-01	ci left: 1.235543e-03	ci right 1.368766e-03	k: 1483	n:1140000
Cons ci ratio: 7.973760e-04	ci left: 9.545738e-01	ci right 9.553361e-01	k: 1088650	n:1140000
KS ci ratio: 1.613420e-01	ci left: 4.757877e-04	ci right 5.601171e-04	k: 589	n:1140000
UGT1A9   1140000 perm   744 sec   (1531 perm/sec)   p_kst 5.166667e-04   p_cons 9.549561e-01   p_joint 1.300877e-03

Joint ci ratio: 1.019334e-01	ci left: 1.218867e-03	ci right 1.350622e-03	k: 1476	n:1150000
Cons ci ratio: 7.941307e-04	ci left: 9.545506e-01	ci right 9.553098e-01	k: 1098171	n:1150000
KS ci ratio: 1.607979e-01	ci left: 4.749885e-04	ci right 5.588648e-04	k: 593	n:1150000
UGT1A9   1150000 perm   756 sec   (1522 perm/sec)   p_kst 5.156522e-04   p_cons 9.549313e-01   p_joint 1.283478e-03

Joint ci ratio: 1.034890e-01	ci left: 1.171401e-03	ci right 1.300075e-03	k: 1432	n:1160000
Cons ci ratio: 7.904731e-04	ci left: 9.545770e-01	ci right 9.553328e-01	k: 1107749	n:1160000
KS ci ratio: 1.597257e-01	ci left: 4.775138e-04	ci right 5.612199e-04	k: 601	n:1160000
UGT1A9   1160000 perm   767 sec   (1513 perm/sec)   p_kst 5.181034e-04   p_cons 9.549560e-01   p_joint 1.234483e-03

Joint ci ratio: 1.030942e-01	ci left: 1.170548e-03	ci right 1.298608e-03	k: 1443	n:1170000
Cons ci ratio: 7.870764e-04	ci left: 9.545799e-01	ci right 9.553324e-01	k: 1117300	n:1170000
KS ci ratio: 1.590665e-01	ci left: 4.775355e-04	ci right 5.608670e-04	k: 606	n:1170000
UGT1A9   1170000 perm   778 sec   (1505 perm/sec)   p_kst 5.179487e-04   p_cons 9.549573e-01   p_joint 1.233333e-03

Joint ci ratio: 1.201211e-01	ci left: 8.475225e-04	ci right 9.566461e-04	k: 1063	n:1180000
Cons ci ratio: 7.839239e-04	ci left: 9.545606e-01	ci right 9.553100e-01	k: 1126825	n:1180000
KS ci ratio: 1.526588e-01	ci left: 5.158391e-04	ci right 6.018973e-04	k: 658	n:1180000
UGT1A9   1180000 perm   789 sec   (1495 perm/sec)   p_kst 5.576271e-04   p_cons 9.549364e-01   p_joint 9.008475e-04

Joint ci ratio: 1.197280e-01	ci left: 8.461063e-04	ci right 9.546658e-04	k: 1070	n:1190000
Cons ci ratio: 7.803515e-04	ci left: 9.545923e-01	ci right 9.553383e-01	k: 1136410	n:1190000
KS ci ratio: 1.520830e-01	ci left: 5.155458e-04	ci right 6.012011e-04	k: 663	n:1190000
UGT1A9   1190000 perm   800 sec   (1487 perm/sec)   p_kst 5.571429e-04   p_cons 9.549664e-01   p_joint 8.991597e-04

Joint ci ratio: 1.195053e-01	ci left: 8.422890e-04	ci right 9.501434e-04	k: 1074	n:1200000
Cons ci ratio: 7.770078e-04	ci left: 9.546033e-01	ci right 9.553462e-01	k: 1145971	n:1200000
KS ci ratio: 1.516271e-01	ci left: 5.144563e-04	ci right 5.996511e-04	k: 667	n:1200000
UGT1A9   1200000 perm   812 sec   (1479 perm/sec)   p_kst 5.558333e-04   p_cons 9.549758e-01   p_joint 8.950000e-04

Joint ci ratio: 1.188984e-01	ci left: 8.441478e-04	ci right 9.516528e-04	k: 1085	n:1210000
Cons ci ratio: 7.737439e-04	ci left: 9.546100e-01	ci right 9.553498e-01	k: 1155527	n:1210000
KS ci ratio: 1.509506e-01	ci left: 5.149755e-04	ci right 5.998415e-04	k: 673	n:1210000
UGT1A9   1210000 perm   823 sec   (1470 perm/sec)   p_kst 5.561983e-04   p_cons 9.549810e-01   p_joint 8.966942e-04

Joint ci ratio: 1.203495e-01	ci left: 8.165540e-04	ci right 9.219043e-04	k: 1059	n:1220000
Cons ci ratio: 7.705649e-04	ci left: 9.546117e-01	ci right 9.553484e-01	k: 1165077	n:1220000
KS ci ratio: 1.507274e-01	ci left: 5.123318e-04	ci right 5.966260e-04	k: 675	n:1220000
UGT1A9   1220000 perm   835 sec   (1462 perm/sec)   p_kst 5.532787e-04   p_cons 9.549811e-01   p_joint 8.680328e-04

Joint ci ratio: 1.200104e-01	ci left: 8.146467e-04	ci right 9.194339e-04	k: 1065	n:1230000
Cons ci ratio: 7.675625e-04	ci left: 9.545979e-01	ci right 9.553317e-01	k: 1174608	n:1230000
KS ci ratio: 1.501731e-01	ci left: 5.120786e-04	ci right 5.959933e-04	k: 680	n:1230000
UGT1A9   1230000 perm   847 sec   (1452 perm/sec)   p_kst 5.528455e-04   p_cons 9.549659e-01   p_joint 8.658537e-04

Joint ci ratio: 1.193404e-01	ci left: 8.174648e-04	ci right 9.219860e-04	k: 1077	n:1240000
Cons ci ratio: 7.643656e-04	ci left: 9.546102e-01	ci right 9.553409e-01	k: 1184171	n:1240000
KS ci ratio: 1.491903e-01	ci left: 5.149352e-04	ci right 5.987166e-04	k: 689	n:1240000
UGT1A9   1240000 perm   859 sec   (1444 perm/sec)   p_kst 5.556452e-04   p_cons 9.549766e-01   p_joint 8.685484e-04

Joint ci ratio: 1.191750e-01	ci left: 8.132534e-04	ci right 9.170818e-04	k: 1080	n:1250000
Cons ci ratio: 7.613215e-04	ci left: 9.546094e-01	ci right 9.553373e-01	k: 1193718	n:1250000
KS ci ratio: 1.490825e-01	ci left: 5.115858e-04	ci right 5.947568e-04	k: 690	n:1250000
UGT1A9   1250000 perm   871 sec   (1435 perm/sec)   p_kst 5.520000e-04   p_cons 9.549744e-01   p_joint 8.640000e-04

Joint ci ratio: 1.186275e-01	ci left: 8.144995e-04	ci right 9.179758e-04	k: 1090	n:1260000
Cons ci ratio: 7.584255e-04	ci left: 9.545960e-01	ci right 9.553210e-01	k: 1203249	n:1260000
KS ci ratio: 1.484395e-01	ci left: 5.121102e-04	ci right 5.949755e-04	k: 696	n:1260000
UGT1A9   1260000 perm   883 sec   (1427 perm/sec)   p_kst 5.523810e-04   p_cons 9.549595e-01   p_joint 8.650794e-04

Joint ci ratio: 1.182488e-01	ci left: 8.134346e-04	ci right 9.164227e-04	k: 1097	n:1270000
Cons ci ratio: 7.553271e-04	ci left: 9.546096e-01	ci right 9.553317e-01	k: 1212814	n:1270000
KS ci ratio: 1.481212e-01	ci left: 5.103524e-04	ci right 5.927405e-04	k: 699	n:1270000
UGT1A9   1270000 perm   895 sec   (1420 perm/sec)   p_kst 5.503937e-04   p_cons 9.549717e-01   p_joint 8.637795e-04

Joint ci ratio: 1.176078e-01	ci left: 8.161782e-04	ci right 9.189144e-04	k: 1109	n:1280000
Cons ci ratio: 7.523483e-04	ci left: 9.546136e-01	ci right 9.553328e-01	k: 1222367	n:1280000
KS ci ratio: 1.473860e-01	ci left: 5.116319e-04	ci right 5.937804e-04	k: 706	n:1280000
UGT1A9   1280000 perm   907 sec   (1412 perm/sec)   p_kst 5.515625e-04   p_cons 9.549742e-01   p_joint 8.664062e-04

Joint ci ratio: 1.169770e-01	ci left: 8.188807e-04	ci right 9.213661e-04	k: 1121	n:1290000
Cons ci ratio: 7.493843e-04	ci left: 9.546198e-01	ci right 9.553362e-01	k: 1231923	n:1290000
KS ci ratio: 1.466617e-01	ci left: 5.128925e-04	ci right 5.948033e-04	k: 713	n:1290000
UGT1A9   1290000 perm   919 sec   (1404 perm/sec)   p_kst 5.527132e-04   p_cons 9.549791e-01   p_joint 8.689922e-04

Joint ci ratio: 1.162537e-01	ci left: 8.230368e-04	ci right 9.253618e-04	k: 1135	n:1300000
Cons ci ratio: 7.467421e-04	ci left: 9.545928e-01	ci right 9.553067e-01	k: 1241436	n:1300000
KS ci ratio: 1.457458e-01	ci left: 5.156171e-04	ci right 5.974040e-04	k: 722	n:1300000
UGT1A9   1300000 perm   932 sec   (1395 perm/sec)   p_kst 5.553846e-04   p_cons 9.549508e-01   p_joint 8.730769e-04

Joint ci ratio: 1.167178e-01	ci left: 8.100837e-04	ci right 9.112280e-04	k: 1126	n:1310000
Cons ci ratio: 7.437248e-04	ci left: 9.546130e-01	ci right 9.553239e-01	k: 1251010	n:1310000
KS ci ratio: 1.454445e-01	ci left: 5.138877e-04	ci right 5.952171e-04	k: 725	n:1310000
UGT1A9   1310000 perm   944 sec   (1387 perm/sec)   p_kst 5.534351e-04   p_cons 9.549695e-01   p_joint 8.595420e-04

Joint ci ratio: 1.052389e-01	ci left: 9.947317e-04	ci right 1.105961e-03	k: 1385	n:1320000
Cons ci ratio: 7.407240e-04	ci left: 9.546351e-01	ci right 9.553432e-01	k: 1260587	n:1320000
KS ci ratio: 1.450455e-01	ci left: 5.129148e-04	ci right 5.938483e-04	k: 729	n:1320000
UGT1A9   1320000 perm   957 sec   (1380 perm/sec)   p_kst 5.522727e-04   p_cons 9.549902e-01   p_joint 1.049242e-03

Joint ci ratio: 1.047862e-01	ci left: 9.960381e-04	ci right 1.106905e-03	k: 1397	n:1330000
Cons ci ratio: 7.377462e-04	ci left: 9.546584e-01	ci right 9.553637e-01	k: 1270166	n:1330000
KS ci ratio: 1.443550e-01	ci left: 5.141309e-04	ci right 5.948368e-04	k: 736	n:1330000
UGT1A9   1330000 perm   970 sec   (1371 perm/sec)   p_kst 5.533835e-04   p_cons 9.550120e-01   p_joint 1.050376e-03

Joint ci ratio: 1.094722e-01	ci left: 9.036275e-04	ci right 1.008996e-03	k: 1280	n:1340000
Cons ci ratio: 7.350528e-04	ci left: 9.546521e-01	ci right 9.553548e-01	k: 1279706	n:1340000
KS ci ratio: 1.438678e-01	ci left: 5.138909e-04	ci right 5.942635e-04	k: 741	n:1340000
UGT1A9   1340000 perm   982 sec   (1364 perm/sec)   p_kst 5.529851e-04   p_cons 9.550045e-01   p_joint 9.552239e-04

Joint ci ratio: 1.090896e-01	ci left: 9.034184e-04	ci right 1.008371e-03	k: 1289	n:1350000
Cons ci ratio: 7.324203e-04	ci left: 9.546423e-01	ci right 9.553424e-01	k: 1289241	n:1350000
KS ci ratio: 1.432896e-01	ci left: 5.143691e-04	ci right 5.944655e-04	k: 747	n:1350000
UGT1A9   1350000 perm   995 sec   (1357 perm/sec)   p_kst 5.533333e-04   p_cons 9.549933e-01   p_joint 9.548148e-04

Joint ci ratio: 1.087111e-01	ci left: 9.032131e-04	ci right 1.007754e-03	k: 1298	n:1360000
Cons ci ratio: 7.297034e-04	ci left: 9.546458e-01	ci right 9.553434e-01	k: 1298794	n:1360000
KS ci ratio: 1.428131e-01	ci left: 5.141318e-04	ci right 5.939024e-04	k: 752	n:1360000
UGT1A9   1360000 perm   1007 sec   (1350 perm/sec)   p_kst 5.529412e-04   p_cons 9.549956e-01   p_joint 9.544118e-04

Joint ci ratio: 1.082123e-01	ci left: 9.051418e-04	ci right 1.009395e-03	k: 1310	n:1370000
Cons ci ratio: 7.268931e-04	ci left: 9.546640e-01	ci right 9.553589e-01	k: 1308367	n:1370000
KS ci ratio: 1.419671e-01	ci left: 5.167144e-04	ci right 5.963705e-04	k: 761	n:1370000
UGT1A9   1370000 perm   1020 sec   (1343 perm/sec)   p_kst 5.554745e-04   p_cons 9.550124e-01   p_joint 9.562044e-04

Joint ci ratio: 1.078428e-01	ci left: 9.049283e-04	ci right 1.008779e-03	k: 1319	n:1380000
Cons ci ratio: 7.243897e-04	ci left: 9.546492e-01	ci right 9.553417e-01	k: 1317895	n:1380000
KS ci ratio: 1.413194e-01	ci left: 5.178628e-04	ci right 5.973011e-04	k: 768	n:1380000
UGT1A9   1380000 perm   1033 sec   (1336 perm/sec)   p_kst 5.565217e-04   p_cons 9.549964e-01   p_joint 9.557971e-04

Joint ci ratio: 1.073962e-01	ci left: 9.061188e-04	ci right 1.009648e-03	k: 1330	n:1390000
Cons ci ratio: 7.218938e-04	ci left: 9.546367e-01	ci right 9.553268e-01	k: 1327426	n:1390000
KS ci ratio: 1.408622e-01	ci left: 5.176073e-04	ci right 5.967280e-04	k: 773	n:1390000
UGT1A9   1390000 perm   1046 sec   (1329 perm/sec)   p_kst 5.561151e-04   p_cons 9.549827e-01   p_joint 9.568345e-04

Joint ci ratio: 1.070749e-01	ci left: 9.052075e-04	ci right 1.008304e-03	k: 1338	n:1400000
Cons ci ratio: 7.192980e-04	ci left: 9.546395e-01	ci right 9.553272e-01	k: 1336978	n:1400000
KS ci ratio: 1.404997e-01	ci left: 5.166667e-04	ci right 5.954233e-04	k: 777	n:1400000
UGT1A9   1400000 perm   1059 sec   (1322 perm/sec)   p_kst 5.550000e-04   p_cons 9.549843e-01   p_joint 9.557143e-04

Joint ci ratio: 1.067566e-01	ci left: 9.043096e-04	ci right 1.006978e-03	k: 1346	n:1410000
Cons ci ratio: 7.165407e-04	ci left: 9.546651e-01	ci right 9.553501e-01	k: 1346562	n:1410000
KS ci ratio: 1.401400e-01	ci left: 5.157397e-04	ci right 5.941369e-04	k: 781	n:1410000
UGT1A9   1410000 perm   1072 sec   (1315 perm/sec)   p_kst 5.539007e-04   p_cons 9.550085e-01   p_joint 9.546099e-04

Joint ci ratio: 1.067966e-01	ci left: 8.972556e-04	ci right 9.991637e-04	k: 1345	n:1420000
Cons ci ratio: 7.138498e-04	ci left: 9.546860e-01	ci right 9.553685e-01	k: 1356140	n:1420000
KS ci ratio: 1.396941e-01	ci left: 5.155056e-04	ci right 5.935971e-04	k: 786	n:1420000
UGT1A9   1420000 perm   1085 sec   (1309 perm/sec)   p_kst 5.535211e-04   p_cons 9.550282e-01   p_joint 9.471831e-04

Joint ci ratio: 1.065990e-01	ci left: 8.943842e-04	ci right 9.957664e-04	k: 1350	n:1430000
Cons ci ratio: 7.114148e-04	ci left: 9.546793e-01	ci right 9.553594e-01	k: 1365679	n:1430000
KS ci ratio: 1.394288e-01	ci left: 5.139253e-04	ci right 5.916172e-04	k: 789	n:1430000
UGT1A9   1430000 perm   1098 sec   (1303 perm/sec)   p_kst 5.517483e-04   p_cons 9.550203e-01   p_joint 9.440559e-04

Joint ci ratio: 1.082562e-01	ci left: 8.604652e-04	ci right 9.596154e-04	k: 1309	n:1440000
Cons ci ratio: 7.089758e-04	ci left: 9.546762e-01	ci right 9.553539e-01	k: 1375223	n:1440000
KS ci ratio: 1.389023e-01	ci left: 5.143779e-04	ci right 5.918204e-04	k: 795	n:1440000
UGT1A9   1440000 perm   1111 sec   (1296 perm/sec)   p_kst 5.520833e-04   p_cons 9.550160e-01   p_joint 9.090278e-04

Joint ci ratio: 1.080503e-01	ci left: 8.578859e-04	ci right 9.565389e-04	k: 1314	n:1450000
Cons ci ratio: 7.066751e-04	ci left: 9.546592e-01	ci right 9.553348e-01	k: 1384747	n:1450000
KS ci ratio: 1.386414e-01	ci left: 5.128276e-04	ci right 5.898797e-04	k: 798	n:1450000
UGT1A9   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 5.503448e-04   p_cons 9.549979e-01   p_joint 9.062069e-04

Joint ci ratio: 1.073987e-01	ci left: 8.626737e-04	ci right 9.612412e-04	k: 1330	n:1460000
Cons ci ratio: 7.041721e-04	ci left: 9.546701e-01	ci right 9.553432e-01	k: 1394311	n:1460000
KS ci ratio: 1.377816e-01	ci left: 5.159276e-04	ci right 5.929254e-04	k: 808	n:1460000
UGT1A9   1460000 perm   1137 sec   (1284 perm/sec)   p_kst 5.534247e-04   p_cons 9.550075e-01   p_joint 9.109589e-04

Joint ci ratio: 1.071575e-01	ci left: 8.607772e-04	ci right 9.588933e-04	k: 1336	n:1470000
Cons ci ratio: 7.016733e-04	ci left: 9.546834e-01	ci right 9.553542e-01	k: 1403879	n:1470000
KS ci ratio: 1.375270e-01	ci left: 5.143884e-04	ci right 5.910029e-04	k: 811	n:1470000
UGT1A9   1470000 perm   1151 sec   (1278 perm/sec)   p_kst 5.517007e-04   p_cons 9.550197e-01   p_joint 9.088435e-04

Joint ci ratio: 1.067193e-01	ci left: 8.621948e-04	ci right 9.600454e-04	k: 1347	n:1480000
Cons ci ratio: 6.993933e-04	ci left: 9.546729e-01	ci right 9.553415e-01	k: 1413412	n:1480000
KS ci ratio: 1.371055e-01	ci left: 5.141751e-04	ci right 5.905041e-04	k: 816	n:1480000
UGT1A9   1480000 perm   1164 sec   (1272 perm/sec)   p_kst 5.513514e-04   p_cons 9.550081e-01   p_joint 9.101351e-04

Joint ci ratio: 1.064827e-01	ci left: 8.603277e-04	ci right 9.577364e-04	k: 1353	n:1490000
Cons ci ratio: 6.969176e-04	ci left: 9.546895e-01	ci right 9.553557e-01	k: 1422985	n:1490000
KS ci ratio: 1.367712e-01	ci left: 5.133169e-04	ci right 5.893174e-04	k: 820	n:1490000
UGT1A9   1490000 perm   1177 sec   (1266 perm/sec)   p_kst 5.503356e-04   p_cons 9.550235e-01   p_joint 9.080537e-04

Joint ci ratio: 1.062868e-01	ci left: 8.578368e-04	ci right 9.547736e-04	k: 1358	n:1500000
Cons ci ratio: 6.945973e-04	ci left: 9.546898e-01	ci right 9.553538e-01	k: 1432534	n:1500000
KS ci ratio: 1.367715e-01	ci left: 5.098947e-04	ci right 5.853887e-04	k: 820	n:1500000
UGT1A9   1500000 perm   1190 sec   (1260 perm/sec)   p_kst 5.466667e-04   p_cons 9.550227e-01   p_joint 9.053333e-04

Joint ci ratio: 1.060920e-01	ci left: 8.553790e-04	ci right 9.518498e-04	k: 1363	n:1510000
Cons ci ratio: 6.922947e-04	ci left: 9.546907e-01	ci right 9.553525e-01	k: 1442084	n:1510000
KS ci ratio: 1.366053e-01	ci left: 5.077971e-04	ci right 5.828818e-04	k: 822	n:1510000
UGT1A9   1510000 perm   1204 sec   (1254 perm/sec)   p_kst 5.443709e-04   p_cons 9.550225e-01   p_joint 9.026490e-04

Joint ci ratio: 1.058595e-01	ci left: 8.535942e-04	ci right 9.496396e-04	k: 1369	n:1520000
Cons ci ratio: 6.901363e-04	ci left: 9.546765e-01	ci right 9.553362e-01	k: 1451611	n:1520000
KS ci ratio: 1.363571e-01	ci left: 5.063626e-04	ci right 5.810881e-04	k: 825	n:1520000
UGT1A9   1520000 perm   1217 sec   (1249 perm/sec)   p_kst 5.427632e-04   p_cons 9.550072e-01   p_joint 9.006579e-04

Joint ci ratio: 1.055135e-01	ci left: 8.537420e-04	ci right 9.494706e-04	k: 1378	n:1530000
Cons ci ratio: 6.878881e-04	ci left: 9.546762e-01	ci right 9.553338e-01	k: 1461159	n:1530000
KS ci ratio: 1.360282e-01	ci left: 5.055783e-04	ci right 5.799936e-04	k: 829	n:1530000
UGT1A9   1530000 perm   1231 sec   (1243 perm/sec)   p_kst 5.418301e-04   p_cons 9.550059e-01   p_joint 9.006536e-04

Joint ci ratio: 1.051709e-01	ci left: 8.538884e-04	ci right 9.493033e-04	k: 1387	n:1540000
Cons ci ratio: 6.857187e-04	ci left: 9.546688e-01	ci right 9.553243e-01	k: 1470696	n:1540000
KS ci ratio: 1.357832e-01	ci left: 5.041771e-04	ci right 5.782417e-04	k: 832	n:1540000
UGT1A9   1540000 perm   1244 sec   (1238 perm/sec)   p_kst 5.402597e-04   p_cons 9.549974e-01   p_joint 9.006494e-04

Joint ci ratio: 1.048691e-01	ci left: 8.534052e-04	ci right 9.484756e-04	k: 1395	n:1550000
Cons ci ratio: 6.835594e-04	ci left: 9.546628e-01	ci right 9.553162e-01	k: 1480235	n:1550000
KS ci ratio: 1.353775e-01	ci left: 5.040408e-04	ci right 5.778462e-04	k: 837	n:1550000
UGT1A9   1550000 perm   1258 sec   (1232 perm/sec)   p_kst 5.400000e-04   p_cons 9.549903e-01   p_joint 9.000000e-04

Joint ci ratio: 1.053616e-01	ci left: 8.398201e-04	ci right 9.338436e-04	k: 1382	n:1560000
Cons ci ratio: 6.815930e-04	ci left: 9.546349e-01	ci right 9.552865e-01	k: 1489740	n:1560000
KS ci ratio: 1.351359e-01	ci left: 5.026677e-04	ci right 5.761302e-04	k: 840	n:1560000
UGT1A9   1560000 perm   1272 sec   (1226 perm/sec)   p_kst 5.384615e-04   p_cons 9.549615e-01   p_joint 8.858974e-04

Joint ci ratio: 1.051339e-01	ci left: 8.381919e-04	ci right 9.318178e-04	k: 1388	n:1570000
Cons ci ratio: 6.793968e-04	ci left: 9.546388e-01	ci right 9.552882e-01	k: 1499294	n:1570000
KS ci ratio: 1.346564e-01	ci left: 5.031587e-04	ci right 5.764112e-04	k: 846	n:1570000
UGT1A9   1570000 perm   1286 sec   (1221 perm/sec)   p_kst 5.388535e-04   p_cons 9.549643e-01   p_joint 8.840764e-04

Joint ci ratio: 1.047199e-01	ci left: 8.396663e-04	ci right 9.330649e-04	k: 1399	n:1580000
Cons ci ratio: 6.773014e-04	ci left: 9.546324e-01	ci right 9.552798e-01	k: 1508832	n:1580000
KS ci ratio: 1.341820e-01	ci left: 5.036439e-04	ci right 5.766881e-04	k: 852	n:1580000
UGT1A9   1580000 perm   1300 sec   (1216 perm/sec)   p_kst 5.392405e-04   p_cons 9.549570e-01   p_joint 8.854430e-04

Joint ci ratio: 1.043479e-01	ci left: 8.405103e-04	ci right 9.336502e-04	k: 1409	n:1590000
Cons ci ratio: 6.752795e-04	ci left: 9.546192e-01	ci right 9.552647e-01	k: 1518359	n:1590000
KS ci ratio: 1.338685e-01	ci left: 5.029077e-04	ci right 5.756611e-04	k: 856	n:1590000
UGT1A9   1590000 perm   1314 sec   (1210 perm/sec)   p_kst 5.383648e-04   p_cons 9.549428e-01   p_joint 8.861635e-04

Joint ci ratio: 1.050213e-01	ci left: 8.243013e-04	ci right 9.162709e-04	k: 1391	n:1600000
Cons ci ratio: 6.731925e-04	ci left: 9.546168e-01	ci right 9.552603e-01	k: 1527903	n:1600000
KS ci ratio: 1.330941e-01	ci left: 5.058059e-04	ci right 5.785218e-04	k: 866	n:1600000
UGT1A9   1600000 perm   1329 sec   (1204 perm/sec)   p_kst 5.412500e-04   p_cons 9.549394e-01   p_joint 8.693750e-04

Joint ci ratio: 1.047208e-01	ci left: 8.240200e-04	ci right 9.156790e-04	k: 1399	n:1610000
Cons ci ratio: 6.709309e-04	ci left: 9.546394e-01	ci right 9.552807e-01	k: 1537487	n:1610000
KS ci ratio: 1.327120e-01	ci left: 5.056666e-04	ci right 5.781373e-04	k: 871	n:1610000
UGT1A9   1610000 perm   1343 sec   (1199 perm/sec)   p_kst 5.409938e-04   p_cons 9.549609e-01   p_joint 8.689441e-04

Joint ci ratio: 1.045344e-01	ci left: 8.219390e-04	ci right 9.131939e-04	k: 1404	n:1620000
Cons ci ratio: 6.688262e-04	ci left: 9.546443e-01	ci right 9.552837e-01	k: 1547043	n:1620000
KS ci ratio: 1.324844e-01	ci left: 5.043356e-04	ci right 5.764818e-04	k: 874	n:1620000
UGT1A9   1620000 perm   1358 sec   (1193 perm/sec)   p_kst 5.395062e-04   p_cons 9.549648e-01   p_joint 8.666667e-04

Joint ci ratio: 1.042012e-01	ci left: 8.222738e-04	ci right 9.132570e-04	k: 1413	n:1630000
Cons ci ratio: 6.667697e-04	ci left: 9.546456e-01	ci right 9.552829e-01	k: 1556593	n:1630000
KS ci ratio: 1.321075e-01	ci left: 5.042075e-04	ci right 5.761140e-04	k: 879	n:1630000
UGT1A9   1630000 perm   1373 sec   (1187 perm/sec)   p_kst 5.392638e-04   p_cons 9.549650e-01   p_joint 8.668712e-04

Joint ci ratio: 1.039809e-01	ci left: 8.208232e-04	ci right 9.114421e-04	k: 1419	n:1640000
Cons ci ratio: 6.645860e-04	ci left: 9.546657e-01	ci right 9.553010e-01	k: 1566174	n:1640000
KS ci ratio: 1.317338e-01	ci left: 5.040812e-04	ci right 5.757505e-04	k: 884	n:1640000
UGT1A9   1640000 perm   1388 sec   (1181 perm/sec)   p_kst 5.390244e-04   p_cons 9.549841e-01   p_joint 8.652439e-04

Joint ci ratio: 1.036530e-01	ci left: 8.211615e-04	ci right 9.115144e-04	k: 1428	n:1650000
Cons ci ratio: 6.625403e-04	ci left: 9.546704e-01	ci right 9.553037e-01	k: 1575730	n:1650000
KS ci ratio: 1.312158e-01	ci left: 5.051291e-04	ci right 5.766430e-04	k: 891	n:1650000
UGT1A9   1650000 perm   1403 sec   (1176 perm/sec)   p_kst 5.400000e-04   p_cons 9.549879e-01   p_joint 8.654545e-04

Joint ci ratio: 1.034361e-01	ci left: 8.197355e-04	ci right 9.097314e-04	k: 1434	n:1660000
Cons ci ratio: 6.606151e-04	ci left: 9.546618e-01	ci right 9.552932e-01	k: 1585264	n:1660000
KS ci ratio: 1.309226e-01	ci left: 5.044167e-04	ci right 5.756578e-04	k: 895	n:1660000
UGT1A9   1660000 perm   1418 sec   (1171 perm/sec)   p_kst 5.391566e-04   p_cons 9.549783e-01   p_joint 8.638554e-04

Joint ci ratio: 1.038355e-01	ci left: 8.084106e-04	ci right 8.975267e-04	k: 1423	n:1670000
Cons ci ratio: 6.586791e-04	ci left: 9.546569e-01	ci right 9.552865e-01	k: 1594804	n:1670000
KS ci ratio: 1.306314e-01	ci left: 5.037131e-04	ci right 5.746843e-04	k: 899	n:1670000
UGT1A9   1670000 perm   1432 sec   (1166 perm/sec)   p_kst 5.383234e-04   p_cons 9.549725e-01   p_joint 8.520958e-04

Joint ci ratio: 1.036175e-01	ci left: 8.070774e-04	ci right 8.958483e-04	k: 1429	n:1680000
Cons ci ratio: 6.566646e-04	ci left: 9.546645e-01	ci right 9.552922e-01	k: 1604365	n:1680000
KS ci ratio: 1.304866e-01	ci left: 5.018664e-04	ci right 5.724930e-04	k: 901	n:1680000
UGT1A9   1680000 perm   1447 sec   (1161 perm/sec)   p_kst 5.363095e-04   p_cons 9.549792e-01   p_joint 8.505952e-04

Joint ci ratio: 9.505410e-02	ci left: 9.575297e-04	ci right 1.053661e-03	k: 1698	n:1690000
Cons ci ratio: 6.544566e-04	ci left: 9.547000e-01	ci right 9.553256e-01	k: 1613973	n:1690000
KS ci ratio: 1.299832e-01	ci left: 5.029038e-04	ci right 5.733823e-04	k: 908	n:1690000
UGT1A9   1690000 perm   1461 sec   (1156 perm/sec)   p_kst 5.372781e-04   p_cons 9.550136e-01   p_joint 1.004734e-03

Joint ci ratio: 9.494257e-02	ci left: 9.541941e-04	ci right 1.049872e-03	k: 1702	n:1700000
Cons ci ratio: 6.524669e-04	ci left: 9.547091e-01	ci right 9.553328e-01	k: 1623537	n:1700000
KS ci ratio: 1.296982e-01	ci left: 5.022221e-04	ci right 5.724388e-04	k: 912	n:1700000
UGT1A9   1700000 perm   1476 sec   (1152 perm/sec)   p_kst 5.364706e-04   p_cons 9.550218e-01   p_joint 1.001176e-03

Joint ci ratio: 9.460977e-02	ci left: 9.554653e-04	ci right 1.050916e-03	k: 1714	n:1710000
Cons ci ratio: 6.505573e-04	ci left: 9.547099e-01	ci right 9.553318e-01	k: 1633087	n:1710000
KS ci ratio: 1.291336e-01	ci left: 5.038120e-04	ci right 5.739209e-04	k: 920	n:1710000
UGT1A9   1710000 perm   1491 sec   (1147 perm/sec)   p_kst 5.380117e-04   p_cons 9.550216e-01   p_joint 1.002339e-03

Joint ci ratio: 9.419858e-02	ci left: 9.584254e-04	ci right 1.053733e-03	k: 1729	n:1720000
Cons ci ratio: 6.486160e-04	ci left: 9.547171e-01	ci right 9.553371e-01	k: 1642648	n:1720000
KS ci ratio: 1.285763e-01	ci left: 5.053842e-04	ci right 5.753851e-04	k: 928	n:1720000
UGT1A9   1720000 perm   1506 sec   (1142 perm/sec)   p_kst 5.395349e-04   p_cons 9.550279e-01   p_joint 1.005233e-03

Joint ci ratio: 9.387352e-02	ci left: 9.596587e-04	ci right 1.054741e-03	k: 1741	n:1730000
Cons ci ratio: 6.467312e-04	ci left: 9.547190e-01	ci right 9.553372e-01	k: 1652200	n:1730000
KS ci ratio: 1.281630e-01	ci left: 5.058197e-04	ci right 5.756387e-04	k: 934	n:1730000
UGT1A9   1730000 perm   1521 sec   (1138 perm/sec)   p_kst 5.398844e-04   p_cons 9.550289e-01   p_joint 1.006358e-03

Joint ci ratio: 9.349845e-02	ci left: 9.620009e-04	ci right 1.056914e-03	k: 1755	n:1740000
Cons ci ratio: 6.449835e-04	ci left: 9.547048e-01	ci right 9.553213e-01	k: 1661724	n:1740000
KS ci ratio: 1.275505e-01	ci left: 5.079197e-04	ci right 5.776682e-04	k: 943	n:1740000
UGT1A9   1740000 perm   1536 sec   (1133 perm/sec)   p_kst 5.419540e-04   p_cons 9.550138e-01   p_joint 1.008621e-03

Joint ci ratio: 9.339231e-02	ci left: 9.587360e-04	ci right 1.053214e-03	k: 1759	n:1750000
Cons ci ratio: 6.430787e-04	ci left: 9.547136e-01	ci right 9.553283e-01	k: 1671288	n:1750000
KS ci ratio: 1.274157e-01	ci left: 5.061237e-04	ci right 5.755465e-04	k: 945	n:1750000
UGT1A9   1750000 perm   1552 sec   (1128 perm/sec)   p_kst 5.400000e-04   p_cons 9.550217e-01   p_joint 1.005143e-03

Joint ci ratio: 9.310179e-02	ci left: 9.593929e-04	ci right 1.053625e-03	k: 1770	n:1760000
Cons ci ratio: 6.413815e-04	ci left: 9.546967e-01	ci right 9.553098e-01	k: 1680807	n:1760000
KS ci ratio: 1.270135e-01	ci left: 5.065486e-04	ci right 5.757939e-04	k: 951	n:1760000
UGT1A9   1760000 perm   1567 sec   (1123 perm/sec)   p_kst 5.403409e-04   p_cons 9.550040e-01   p_joint 1.005682e-03

Joint ci ratio: 9.289228e-02	ci left: 9.583872e-04	ci right 1.052297e-03	k: 1778	n:1770000
Cons ci ratio: 6.395547e-04	ci left: 9.546992e-01	ci right 9.553106e-01	k: 1690360	n:1770000
KS ci ratio: 1.265491e-01	ci left: 5.075161e-04	ci right 5.766210e-04	k: 958	n:1770000
UGT1A9   1770000 perm   1583 sec   (1118 perm/sec)   p_kst 5.412429e-04   p_cons 9.550056e-01   p_joint 1.004520e-03

Joint ci ratio: 9.268417e-02	ci left: 9.573931e-04	ci right 1.050984e-03	k: 1786	n:1780000
Cons ci ratio: 6.378392e-04	ci left: 9.546888e-01	ci right 9.552985e-01	k: 1699890	n:1780000
KS ci ratio: 1.263517e-01	ci left: 5.062970e-04	ci right 5.751202e-04	k: 961	n:1780000
UGT1A9   1780000 perm   1599 sec   (1114 perm/sec)   p_kst 5.398876e-04   p_cons 9.549944e-01   p_joint 1.003371e-03

Joint ci ratio: 9.252907e-02	ci left: 9.553188e-04	ci right 1.048542e-03	k: 1792	n:1790000
Cons ci ratio: 6.360920e-04	ci left: 9.546846e-01	ci right 9.552927e-01	k: 1709431	n:1790000
KS ci ratio: 1.256999e-01	ci left: 5.088790e-04	ci right 5.776698e-04	k: 971	n:1790000
UGT1A9   1790000 perm   1614 sec   (1109 perm/sec)   p_kst 5.424581e-04   p_cons 9.549894e-01   p_joint 1.001117e-03

Joint ci ratio: 9.216983e-02	ci left: 9.576097e-04	ci right 1.050674e-03	k: 1806	n:1800000
Cons ci ratio: 6.342853e-04	ci left: 9.546906e-01	ci right 9.552969e-01	k: 1718990	n:1800000
KS ci ratio: 1.253137e-01	ci left: 5.092806e-04	ci right 5.778985e-04	k: 977	n:1800000
UGT1A9   1800000 perm   1630 sec   (1104 perm/sec)   p_kst 5.427778e-04   p_cons 9.549944e-01   p_joint 1.003333e-03

Joint ci ratio: 9.227237e-02	ci left: 9.501599e-04	ci right 1.042609e-03	k: 1802	n:1810000
Cons ci ratio: 6.326687e-04	ci left: 9.546726e-01	ci right 9.552773e-01	k: 1728506	n:1810000
KS ci ratio: 1.251859e-01	ci left: 5.075372e-04	ci right 5.758453e-04	k: 979	n:1810000
UGT1A9   1810000 perm   1646 sec   (1099 perm/sec)   p_kst 5.408840e-04   p_cons 9.549757e-01   p_joint 9.955801e-04

Joint ci ratio: 9.350053e-02	ci left: 9.197142e-04	ci right 1.010457e-03	k: 1755	n:1820000
Cons ci ratio: 6.310441e-04	ci left: 9.546576e-01	ci right 9.552607e-01	k: 1738027	n:1820000
KS ci ratio: 1.249948e-01	ci left: 5.063453e-04	ci right 5.743812e-04	k: 982	n:1820000
UGT1A9   1820000 perm   1663 sec   (1095 perm/sec)   p_kst 5.395604e-04   p_cons 9.549599e-01   p_joint 9.642857e-04

Joint ci ratio: 9.384915e-02	ci left: 9.077508e-04	ci right 9.976657e-04	k: 1742	n:1830000
Cons ci ratio: 6.292360e-04	ci left: 9.546696e-01	ci right 9.552710e-01	k: 1747597	n:1830000
KS ci ratio: 1.244891e-01	ci left: 5.078136e-04	ci right 5.757504e-04	k: 990	n:1830000
UGT1A9   1830000 perm   1679 sec   (1090 perm/sec)   p_kst 5.409836e-04   p_cons 9.549710e-01   p_joint 9.519126e-04

Joint ci ratio: 9.366133e-02	ci left: 9.065325e-04	ci right 9.961372e-04	k: 1749	n:1840000
Cons ci ratio: 6.277090e-04	ci left: 9.546450e-01	ci right 9.552449e-01	k: 1757100	n:1840000
KS ci ratio: 1.243012e-01	ci left: 5.066334e-04	ci right 5.743025e-04	k: 993	n:1840000
UGT1A9   1840000 perm   1695 sec   (1086 perm/sec)   p_kst 5.396739e-04   p_cons 9.549457e-01   p_joint 9.505435e-04

Joint ci ratio: 9.336830e-02	ci left: 9.074392e-04	ci right 9.968376e-04	k: 1760	n:1850000
Cons ci ratio: 6.260434e-04	ci left: 9.546412e-01	ci right 9.552395e-01	k: 1766641	n:1850000
KS ci ratio: 1.239898e-01	ci left: 5.065136e-04	ci right 5.739848e-04	k: 998	n:1850000
UGT1A9   1850000 perm   1713 sec   (1080 perm/sec)   p_kst 5.394595e-04   p_cons 9.549411e-01   p_joint 9.513514e-04

Joint ci ratio: 9.305174e-02	ci left: 9.088618e-04	ci right 9.980802e-04	k: 1772	n:1860000
Cons ci ratio: 6.244378e-04	ci left: 9.546310e-01	ci right 9.552278e-01	k: 1776170	n:1860000
KS ci ratio: 1.237423e-01	ci left: 5.058743e-04	ci right 5.731160e-04	k: 1002	n:1860000
UGT1A9   1860000 perm   1729 sec   (1076 perm/sec)   p_kst 5.387097e-04   p_cons 9.549301e-01   p_joint 9.526882e-04

Joint ci ratio: 9.268641e-02	ci left: 9.113143e-04	ci right 1.000403e-03	k: 1786	n:1870000
Cons ci ratio: 6.227980e-04	ci left: 9.546273e-01	ci right 9.552226e-01	k: 1785711	n:1870000
KS ci ratio: 1.233739e-01	ci left: 5.062785e-04	ci right 5.733589e-04	k: 1008	n:1870000
UGT1A9   1870000 perm   1746 sec   (1071 perm/sec)   p_kst 5.390374e-04   p_cons 9.549257e-01   p_joint 9.550802e-04

Joint ci ratio: 9.245390e-02	ci left: 9.111433e-04	ci right 9.999800e-04	k: 1795	n:1880000
Cons ci ratio: 6.212325e-04	ci left: 9.546152e-01	ci right 9.552089e-01	k: 1795236	n:1880000
KS ci ratio: 1.231301e-01	ci left: 5.056476e-04	ci right 5.725023e-04	k: 1012	n:1880000
UGT1A9   1880000 perm   1762 sec   (1067 perm/sec)   p_kst 5.382979e-04   p_cons 9.549128e-01   p_joint 9.547872e-04

Joint ci ratio: 9.212102e-02	ci left: 9.130421e-04	ci right 1.001726e-03	k: 1808	n:1890000
Cons ci ratio: 6.195950e-04	ci left: 9.546149e-01	ci right 9.552070e-01	k: 1804783	n:1890000
KS ci ratio: 1.226467e-01	ci left: 5.070749e-04	ci right 5.738360e-04	k: 1020	n:1890000
UGT1A9   1890000 perm   1779 sec   (1062 perm/sec)   p_kst 5.396825e-04   p_cons 9.549116e-01   p_joint 9.566138e-04

Joint ci ratio: 9.184217e-02	ci left: 9.138929e-04	ci right 1.002376e-03	k: 1819	n:1900000
Cons ci ratio: 6.179287e-04	ci left: 9.546203e-01	ci right 9.552109e-01	k: 1814341	n:1900000
KS ci ratio: 1.223475e-01	ci left: 5.069571e-04	ci right 5.735280e-04	k: 1025	n:1900000
UGT1A9   1900000 perm   1796 sec   (1058 perm/sec)   p_kst 5.394737e-04   p_cons 9.549163e-01   p_joint 9.573684e-04

Joint ci ratio: 9.154083e-02	ci left: 9.152468e-04	ci right 1.003555e-03	k: 1831	n:1910000
Cons ci ratio: 6.162084e-04	ci left: 9.546352e-01	ci right 9.552241e-01	k: 1823917	n:1910000
KS ci ratio: 1.219322e-01	ci left: 5.078558e-04	ci right 5.743021e-04	k: 1032	n:1910000
UGT1A9   1910000 perm   1813 sec   (1054 perm/sec)   p_kst 5.403141e-04   p_cons 9.549304e-01   p_joint 9.586387e-04

Joint ci ratio: 9.121768e-02	ci left: 9.170960e-04	ci right 1.005254e-03	k: 1844	n:1920000
Cons ci ratio: 6.146399e-04	ci left: 9.546306e-01	ci right 9.552180e-01	k: 1833456	n:1920000
KS ci ratio: 1.214627e-01	ci left: 5.092506e-04	ci right 5.756043e-04	k: 1040	n:1920000
UGT1A9   1920000 perm   1830 sec   (1049 perm/sec)   p_kst 5.416667e-04   p_cons 9.549250e-01   p_joint 9.604167e-04

Joint ci ratio: 9.102059e-02	ci left: 9.163949e-04	ci right 1.004285e-03	k: 1852	n:1930000
Cons ci ratio: 6.131386e-04	ci left: 9.546182e-01	ci right 9.552042e-01	k: 1842980	n:1930000
KS ci ratio: 1.212300e-01	ci left: 5.086216e-04	ci right 5.747574e-04	k: 1044	n:1930000
UGT1A9   1930000 perm   1846 sec   (1045 perm/sec)   p_kst 5.409326e-04   p_cons 9.549119e-01   p_joint 9.595855e-04

Joint ci ratio: 9.080037e-02	ci left: 9.162049e-04	ci right 1.003853e-03	k: 1861	n:1940000
Cons ci ratio: 6.115458e-04	ci left: 9.546205e-01	ci right 9.552050e-01	k: 1852532	n:1940000
KS ci ratio: 1.209987e-01	ci left: 5.079992e-04	ci right 5.739190e-04	k: 1048	n:1940000
UGT1A9   1940000 perm   1865 sec   (1040 perm/sec)   p_kst 5.402062e-04   p_cons 9.549134e-01   p_joint 9.592784e-04

Joint ci ratio: 9.048497e-02	ci left: 9.180220e-04	ci right 1.005522e-03	k: 1874	n:1950000
Cons ci ratio: 6.099616e-04	ci left: 9.546232e-01	ci right 9.552062e-01	k: 1862085	n:1950000
KS ci ratio: 1.205399e-01	ci left: 5.093727e-04	ci right 5.752022e-04	k: 1056	n:1950000
UGT1A9   1950000 perm   1881 sec   (1037 perm/sec)   p_kst 5.415385e-04   p_cons 9.549154e-01   p_joint 9.610256e-04

Joint ci ratio: 9.019674e-02	ci left: 9.193223e-04	ci right 1.006653e-03	k: 1886	n:1960000
Cons ci ratio: 6.085051e-04	ci left: 9.546096e-01	ci right 9.551911e-01	k: 1871606	n:1960000
KS ci ratio: 1.203125e-01	ci left: 5.087532e-04	ci right 5.743698e-04	k: 1060	n:1960000
UGT1A9   1960000 perm   1898 sec   (1033 perm/sec)   p_kst 5.408163e-04   p_cons 9.549010e-01   p_joint 9.622449e-04

Joint ci ratio: 9.002997e-02	ci left: 9.181289e-04	ci right 1.005176e-03	k: 1893	n:1970000
Cons ci ratio: 6.067620e-04	ci left: 9.546383e-01	ci right 9.552182e-01	k: 1881210	n:1970000
KS ci ratio: 1.199737e-01	ci left: 5.091249e-04	ci right 5.745914e-04	k: 1066	n:1970000
UGT1A9   1970000 perm   1915 sec   (1029 perm/sec)   p_kst 5.411168e-04   p_cons 9.549289e-01   p_joint 9.609137e-04

Joint ci ratio: 8.988779e-02	ci left: 9.164540e-04	ci right 1.003198e-03	k: 1899	n:1980000
Cons ci ratio: 6.053282e-04	ci left: 9.546247e-01	ci right 9.552032e-01	k: 1890731	n:1980000
KS ci ratio: 1.198055e-01	ci left: 5.080232e-04	ci right 5.732500e-04	k: 1069	n:1980000
UGT1A9   1980000 perm   1933 sec   (1024 perm/sec)   p_kst 5.398990e-04   p_cons 9.549146e-01   p_joint 9.590909e-04

Joint ci ratio: 8.960521e-02	ci left: 9.177436e-04	ci right 1.004322e-03	k: 1911	n:1990000
Cons ci ratio: 6.037354e-04	ci left: 9.546355e-01	ci right 9.552125e-01	k: 1900300	n:1990000
KS ci ratio: 1.195266e-01	ci left: 5.079077e-04	ci right 5.729571e-04	k: 1074	n:1990000
UGT1A9   1990000 perm   1950 sec   (1021 perm/sec)   p_kst 5.396985e-04   p_cons 9.549246e-01   p_joint 9.603015e-04

Joint ci ratio: 8.937180e-02	ci left: 9.180430e-04	ci right 1.004413e-03	k: 1921	n:2000000
Cons ci ratio: 6.022320e-04	ci left: 9.546351e-01	ci right 9.552106e-01	k: 1909847	n:2000000
KS ci ratio: 1.194156e-01	ci left: 5.063383e-04	ci right 5.711222e-04	k: 1076	n:2000000
UGT1A9   2000000 perm   1967 sec   (1017 perm/sec)   p_kst 5.380000e-04   p_cons 9.549235e-01   p_joint 9.605000e-04

Joint ci ratio: 8.907100e-02	ci left: 9.197990e-04	ci right 1.006027e-03	k: 1934	n:2010000
Cons ci ratio: 6.007988e-04	ci left: 9.546262e-01	ci right 9.552004e-01	k: 1919377	n:2010000
KS ci ratio: 1.189745e-01	ci left: 5.076806e-04	ci right 5.723795e-04	k: 1084	n:2010000
UGT1A9   2010000 perm   1985 sec   (1013 perm/sec)   p_kst 5.393035e-04   p_cons 9.549139e-01   p_joint 9.621891e-04

Joint ci ratio: 8.884172e-02	ci left: 9.200859e-04	ci right 1.006108e-03	k: 1944	n:2020000
Cons ci ratio: 5.993448e-04	ci left: 9.546219e-01	ci right 9.551947e-01	k: 1928916	n:2020000
KS ci ratio: 1.187558e-01	ci left: 5.070887e-04	ci right 5.715850e-04	k: 1088	n:2020000
UGT1A9   2020000 perm   2002 sec   (1009 perm/sec)   p_kst 5.386139e-04   p_cons 9.549089e-01   p_joint 9.623762e-04

Joint ci ratio: 8.872785e-02	ci left: 9.179618e-04	ci right 1.003669e-03	k: 1949	n:2030000
Cons ci ratio: 5.978465e-04	ci left: 9.546255e-01	ci right 9.551969e-01	k: 1938471	n:2030000
KS ci ratio: 1.185927e-01	ci left: 5.060246e-04	ci right 5.702910e-04	k: 1091	n:2030000
UGT1A9   2030000 perm   2020 sec   (1005 perm/sec)   p_kst 5.374384e-04   p_cons 9.549118e-01   p_joint 9.600985e-04

Joint ci ratio: 8.863711e-02	ci left: 9.153792e-04	ci right 1.000754e-03	k: 1953	n:2040000
Cons ci ratio: 5.962745e-04	ci left: 9.546414e-01	ci right 9.552113e-01	k: 1948051	n:2040000
KS ci ratio: 1.184843e-01	ci left: 5.044954e-04	ci right 5.685049e-04	k: 1093	n:2040000
UGT1A9   2040000 perm   2037 sec   (1001 perm/sec)   p_kst 5.357843e-04   p_cons 9.549270e-01   p_joint 9.573529e-04

Joint ci ratio: 8.955960e-02	ci left: 8.918360e-04	ci right 9.759256e-04	k: 1913	n:2050000
Cons ci ratio: 5.947755e-04	ci left: 9.546483e-01	ci right 9.552168e-01	k: 1957613	n:2050000
KS ci ratio: 1.181070e-01	ci left: 5.053481e-04	ci right 5.692473e-04	k: 1100	n:2050000
UGT1A9   2050000 perm   2055 sec   (997 perm/sec)   p_kst 5.365854e-04   p_cons 9.549332e-01   p_joint 9.331707e-04

Joint ci ratio: 8.939633e-02	ci left: 8.908287e-04	ci right 9.746622e-04	k: 1920	n:2060000
Cons ci ratio: 5.933379e-04	ci left: 9.546479e-01	ci right 9.552149e-01	k: 1967160	n:2060000
KS ci ratio: 1.178931e-01	ci left: 5.047794e-04	ci right 5.684830e-04	k: 1104	n:2060000
UGT1A9   2060000 perm   2073 sec   (994 perm/sec)   p_kst 5.359223e-04   p_cons 9.549320e-01   p_joint 9.320388e-04

Joint ci ratio: 8.923395e-02	ci left: 8.898313e-04	ci right 9.734108e-04	k: 1927	n:2070000
Cons ci ratio: 5.918741e-04	ci left: 9.546528e-01	ci right 9.552184e-01	k: 1976718	n:2070000
KS ci ratio: 1.176803e-01	ci left: 5.042162e-04	ci right 5.677260e-04	k: 1108	n:2070000
UGT1A9   2070000 perm   2091 sec   (990 perm/sec)   p_kst 5.352657e-04   p_cons 9.549362e-01   p_joint 9.309179e-04

Joint ci ratio: 8.900341e-02	ci left: 8.902538e-04	ci right 9.736458e-04	k: 1937	n:2080000
Cons ci ratio: 5.904146e-04	ci left: 9.546586e-01	ci right 9.552229e-01	k: 1986278	n:2080000
KS ci ratio: 1.174687e-01	ci left: 5.036586e-04	ci right 5.669762e-04	k: 1112	n:2080000
UGT1A9   2080000 perm   2109 sec   (986 perm/sec)   p_kst 5.346154e-04   p_cons 9.549413e-01   p_joint 9.312500e-04

Joint ci ratio: 8.576455e-02	ci left: 9.557300e-04	ci right 1.041834e-03	k: 2086	n:2090000
Cons ci ratio: 5.888969e-04	ci left: 9.546744e-01	ci right 9.552372e-01	k: 1995859	n:2090000
KS ci ratio: 1.173634e-01	ci left: 5.021776e-04	ci right 5.652484e-04	k: 1114	n:2090000
UGT1A9   2090000 perm   2127 sec   (983 perm/sec)   p_kst 5.330144e-04   p_cons 9.549565e-01   p_joint 9.980861e-04

Joint ci ratio: 8.549861e-02	ci left: 9.572369e-04	ci right 1.043196e-03	k: 2099	n:2100000
Cons ci ratio: 5.876315e-04	ci left: 9.546548e-01	ci right 9.552164e-01	k: 2005366	n:2100000
KS ci ratio: 1.171535e-01	ci left: 5.016352e-04	ci right 5.645174e-04	k: 1118	n:2100000
UGT1A9   2100000 perm   2145 sec   (979 perm/sec)   p_kst 5.323810e-04   p_cons 9.549362e-01   p_joint 9.995238e-04

Joint ci ratio: 8.527554e-02	ci left: 9.578022e-04	ci right 1.043577e-03	k: 2110	n:2110000
Cons ci ratio: 5.861804e-04	ci left: 9.546638e-01	ci right 9.552240e-01	k: 2014933	n:2110000
KS ci ratio: 1.166851e-01	ci left: 5.033984e-04	ci right 5.662320e-04	k: 1127	n:2110000
UGT1A9   2110000 perm   2163 sec   (975 perm/sec)   p_kst 5.341232e-04   p_cons 9.549445e-01   p_joint 1.000000e-03

Joint ci ratio: 8.509436e-02	ci left: 9.574391e-04	ci right 1.042990e-03	k: 2119	n:2120000
Cons ci ratio: 5.848458e-04	ci left: 9.546572e-01	ci right 9.552161e-01	k: 2024467	n:2120000
KS ci ratio: 1.163760e-01	ci left: 5.037716e-04	ci right 5.664738e-04	k: 1133	n:2120000
UGT1A9   2120000 perm   2182 sec   (972 perm/sec)   p_kst 5.344340e-04   p_cons 9.549373e-01   p_joint 9.995283e-04

Joint ci ratio: 8.495428e-02	ci left: 9.561606e-04	ci right 1.041450e-03	k: 2126	n:2130000
Cons ci ratio: 5.834852e-04	ci left: 9.546558e-01	ci right 9.552134e-01	k: 2034012	n:2130000
KS ci ratio: 1.162224e-01	ci left: 5.027739e-04	ci right 5.652637e-04	k: 1136	n:2130000
UGT1A9   2130000 perm   2201 sec   (968 perm/sec)   p_kst 5.333333e-04   p_cons 9.549352e-01   p_joint 9.981221e-04

Joint ci ratio: 8.473543e-02	ci left: 9.567237e-04	ci right 1.041832e-03	k: 2137	n:2140000
Cons ci ratio: 5.820993e-04	ci left: 9.546595e-01	ci right 9.552159e-01	k: 2043568	n:2140000
KS ci ratio: 1.157650e-01	ci left: 5.045082e-04	ci right 5.669498e-04	k: 1145	n:2140000
UGT1A9   2140000 perm   2219 sec   (964 perm/sec)   p_kst 5.350467e-04   p_cons 9.549383e-01   p_joint 9.985981e-04

Joint ci ratio: 8.459712e-02	ci left: 9.554606e-04	ci right 1.040311e-03	k: 2144	n:2150000
Cons ci ratio: 5.806447e-04	ci left: 9.546749e-01	ci right 9.552299e-01	k: 2053149	n:2150000
KS ci ratio: 1.156642e-01	ci left: 5.030649e-04	ci right 5.652700e-04	k: 1147	n:2150000
UGT1A9   2150000 perm   2238 sec   (961 perm/sec)   p_kst 5.334884e-04   p_cons 9.549530e-01   p_joint 9.972093e-04

Joint ci ratio: 8.428324e-02	ci left: 9.582883e-04	ci right 1.043059e-03	k: 2160	n:2160000
Cons ci ratio: 5.793070e-04	ci left: 9.546744e-01	ci right 9.552281e-01	k: 2062696	n:2160000
KS ci ratio: 1.151139e-01	ci left: 5.056815e-04	ci right 5.678925e-04	k: 1158	n:2160000
UGT1A9   2160000 perm   2257 sec   (957 perm/sec)   p_kst 5.361111e-04   p_cons 9.549519e-01   p_joint 1.000000e-03

Joint ci ratio: 8.414712e-02	ci left: 9.570300e-04	ci right 1.041546e-03	k: 2167	n:2170000
Cons ci ratio: 5.779413e-04	ci left: 9.546794e-01	ci right 9.552318e-01	k: 2072255	n:2170000
KS ci ratio: 1.149158e-01	ci left: 5.051415e-04	ci right 5.671718e-04	k: 1162	n:2170000
UGT1A9   2170000 perm   2275 sec   (954 perm/sec)   p_kst 5.354839e-04   p_cons 9.549562e-01   p_joint 9.986175e-04

Joint ci ratio: 8.395373e-02	ci left: 9.571307e-04	ci right 1.041452e-03	k: 2177	n:2180000
Cons ci ratio: 5.765390e-04	ci left: 9.546913e-01	ci right 9.552423e-01	k: 2081829	n:2180000
KS ci ratio: 1.143760e-01	ci left: 5.077255e-04	ci right 5.697605e-04	k: 1173	n:2180000
UGT1A9   2180000 perm   2294 sec   (950 perm/sec)   p_kst 5.380734e-04   p_cons 9.549674e-01   p_joint 9.986239e-04

Joint ci ratio: 8.376166e-02	ci left: 9.572307e-04	ci right 1.041358e-03	k: 2187	n:2190000
Cons ci ratio: 5.752782e-04	ci left: 9.546834e-01	ci right 9.552332e-01	k: 2091360	n:2190000
KS ci ratio: 1.143274e-01	ci left: 5.058507e-04	ci right 5.676286e-04	k: 1174	n:2190000
UGT1A9   2190000 perm   2313 sec   (947 perm/sec)   p_kst 5.360731e-04   p_cons 9.549589e-01   p_joint 9.986301e-04

Joint ci ratio: 8.357090e-02	ci left: 9.573300e-04	ci right 1.041265e-03	k: 2197	n:2200000
Cons ci ratio: 5.740105e-04	ci left: 9.546778e-01	ci right 9.552264e-01	k: 2100896	n:2200000
KS ci ratio: 1.140850e-01	ci left: 5.057592e-04	ci right 5.673861e-04	k: 1179	n:2200000
UGT1A9   2200000 perm   2332 sec   (943 perm/sec)   p_kst 5.359091e-04   p_cons 9.549527e-01   p_joint 9.986364e-04

Joint ci ratio: 8.340034e-02	ci left: 9.569856e-04	ci right 1.040711e-03	k: 2206	n:2210000
Cons ci ratio: 5.727360e-04	ci left: 9.546746e-01	ci right 9.552220e-01	k: 2110437	n:2210000
KS ci ratio: 1.137960e-01	ci left: 5.061082e-04	ci right 5.676110e-04	k: 1185	n:2210000
UGT1A9   2210000 perm   2351 sec   (940 perm/sec)   p_kst 5.361991e-04   p_cons 9.549489e-01   p_joint 9.981900e-04

Joint ci ratio: 8.328728e-02	ci left: 9.553212e-04	ci right 1.038782e-03	k: 2212	n:2220000
Cons ci ratio: 5.715029e-04	ci left: 9.546664e-01	ci right 9.552126e-01	k: 2119967	n:2220000
KS ci ratio: 1.137003e-01	ci left: 5.047037e-04	ci right 5.659807e-04	k: 1187	n:2220000
UGT1A9   2220000 perm   2370 sec   (937 perm/sec)   p_kst 5.346847e-04   p_cons 9.549401e-01   p_joint 9.963964e-04

Joint ci ratio: 8.315593e-02	ci left: 9.541109e-04	ci right 1.037328e-03	k: 2219	n:2230000
Cons ci ratio: 5.702629e-04	ci left: 9.546605e-01	ci right 9.552055e-01	k: 2129502	n:2230000
KS ci ratio: 1.136048e-01	ci left: 5.033118e-04	ci right 5.643651e-04	k: 1189	n:2230000
UGT1A9   2230000 perm   2390 sec   (933 perm/sec)   p_kst 5.331839e-04   p_cons 9.549336e-01   p_joint 9.950673e-04

Joint ci ratio: 8.467788e-02	ci left: 9.153229e-04	ci right 9.966905e-04	k: 2140	n:2240000
Cons ci ratio: 5.689275e-04	ci left: 9.546704e-01	ci right 9.552141e-01	k: 2139072	n:2240000
KS ci ratio: 1.132721e-01	ci left: 5.041012e-04	ci right 5.650592e-04	k: 1196	n:2240000
UGT1A9   2240000 perm   2409 sec   (930 perm/sec)   p_kst 5.339286e-04   p_cons 9.549429e-01   p_joint 9.553571e-04

Joint ci ratio: 7.846647e-02	ci left: 1.064516e-03	ci right 1.151888e-03	k: 2492	n:2250000
Cons ci ratio: 5.677188e-04	ci left: 9.546624e-01	ci right 9.552049e-01	k: 2148602	n:2250000
KS ci ratio: 1.130362e-01	ci left: 5.040201e-04	ci right 5.648329e-04	k: 1201	n:2250000
UGT1A9   2250000 perm   2429 sec   (926 perm/sec)   p_kst 5.337778e-04   p_cons 9.549342e-01   p_joint 1.107556e-03

Joint ci ratio: 7.837230e-02	ci left: 1.062408e-03	ci right 1.149498e-03	k: 2498	n:2260000
Cons ci ratio: 5.665177e-04	ci left: 9.546544e-01	ci right 9.551958e-01	k: 2158132	n:2260000
KS ci ratio: 1.129424e-01	ci left: 5.026499e-04	ci right 5.632436e-04	k: 1203	n:2260000
UGT1A9   2260000 perm   2448 sec   (923 perm/sec)   p_kst 5.323009e-04   p_cons 9.549257e-01   p_joint 1.105310e-03

Joint ci ratio: 7.816921e-02	ci left: 1.063343e-03	ci right 1.150273e-03	k: 2511	n:2270000
Cons ci ratio: 5.653126e-04	ci left: 9.546482e-01	ci right 9.551885e-01	k: 2167666	n:2270000
KS ci ratio: 1.126620e-01	ci left: 5.030041e-04	ci right 5.634801e-04	k: 1209	n:2270000
UGT1A9   2270000 perm   2468 sec   (920 perm/sec)   p_kst 5.325991e-04   p_cons 9.549189e-01   p_joint 1.106167e-03

Joint ci ratio: 7.810717e-02	ci left: 1.060399e-03	ci right 1.147016e-03	k: 2515	n:2280000
Cons ci ratio: 5.640721e-04	ci left: 9.546487e-01	ci right 9.551878e-01	k: 2177215	n:2280000
KS ci ratio: 1.125227e-01	ci left: 5.020767e-04	ci right 5.623616e-04	k: 1212	n:2280000
UGT1A9   2280000 perm   2488 sec   (916 perm/sec)   p_kst 5.315789e-04   p_cons 9.549189e-01   p_joint 1.103070e-03

Joint ci ratio: 7.876829e-02	ci left: 1.037787e-03	ci right 1.123308e-03	k: 2473	n:2290000
Cons ci ratio: 5.629139e-04	ci left: 9.546379e-01	ci right 9.551758e-01	k: 2186738	n:2290000
KS ci ratio: 1.121534e-01	ci left: 5.032795e-04	ci right 5.634974e-04	k: 1220	n:2290000
UGT1A9   2290000 perm   2508 sec   (913 perm/sec)   p_kst 5.327511e-04   p_cons 9.549074e-01   p_joint 1.079913e-03

Joint ci ratio: 7.857793e-02	ci left: 1.038390e-03	ci right 1.123744e-03	k: 2485	n:2300000
Cons ci ratio: 5.616975e-04	ci left: 9.546371e-01	ci right 9.551739e-01	k: 2196284	n:2300000
KS ci ratio: 1.118332e-01	ci left: 5.040496e-04	ci right 5.641761e-04	k: 1227	n:2300000
UGT1A9   2300000 perm   2527 sec   (910 perm/sec)   p_kst 5.334783e-04   p_cons 9.549061e-01   p_joint 1.080435e-03

Joint ci ratio: 7.835755e-02	ci left: 1.039836e-03	ci right 1.125059e-03	k: 2499	n:2310000
Cons ci ratio: 5.605369e-04	ci left: 9.546290e-01	ci right 9.551647e-01	k: 2205813	n:2310000
KS ci ratio: 1.115158e-01	ci left: 5.048132e-04	ci right 5.648486e-04	k: 1234	n:2310000
UGT1A9   2310000 perm   2547 sec   (907 perm/sec)   p_kst 5.341991e-04   p_cons 9.548974e-01   p_joint 1.081818e-03

Joint ci ratio: 7.827941e-02	ci left: 1.037467e-03	ci right 1.122407e-03	k: 2504	n:2320000
Cons ci ratio: 5.593023e-04	ci left: 9.546335e-01	ci right 9.551680e-01	k: 2215371	n:2320000
KS ci ratio: 1.110669e-01	ci left: 5.068277e-04	ci right 5.668442e-04	k: 1244	n:2320000
UGT1A9   2320000 perm   2568 sec   (904 perm/sec)   p_kst 5.362069e-04   p_cons 9.549013e-01   p_joint 1.079310e-03

Joint ci ratio: 7.848372e-02	ci left: 1.027544e-03	ci right 1.111901e-03	k: 2491	n:2330000
Cons ci ratio: 5.581286e-04	ci left: 9.546297e-01	ci right 9.551631e-01	k: 2224910	n:2330000
KS ci ratio: 1.108002e-01	ci left: 5.071562e-04	ci right 5.670579e-04	k: 1250	n:2330000
UGT1A9   2330000 perm   2588 sec   (900 perm/sec)   p_kst 5.364807e-04   p_cons 9.548970e-01   p_joint 1.069099e-03

Joint ci ratio: 7.840520e-02	ci left: 1.025248e-03	ci right 1.109328e-03	k: 2496	n:2340000
Cons ci ratio: 5.569678e-04	ci left: 9.546252e-01	ci right 9.551574e-01	k: 2234447	n:2340000
KS ci ratio: 1.106677e-01	ci left: 5.062354e-04	ci right 5.659521e-04	k: 1253	n:2340000
UGT1A9   2340000 perm   2607 sec   (897 perm/sec)   p_kst 5.354701e-04   p_cons 9.548919e-01   p_joint 1.066667e-03

Joint ci ratio: 7.826431e-02	ci left: 1.024640e-03	ci right 1.108512e-03	k: 2505	n:2350000
Cons ci ratio: 5.557977e-04	ci left: 9.546232e-01	ci right 9.551544e-01	k: 2243990	n:2350000
KS ci ratio: 1.104477e-01	ci left: 5.061500e-04	ci right 5.657303e-04	k: 1258	n:2350000
UGT1A9   2350000 perm   2627 sec   (894 perm/sec)   p_kst 5.353191e-04   p_cons 9.548894e-01   p_joint 1.065957e-03

Joint ci ratio: 7.800009e-02	ci left: 1.027361e-03	ci right 1.111159e-03	k: 2522	n:2360000
Cons ci ratio: 5.545914e-04	ci left: 9.546281e-01	ci right 9.551581e-01	k: 2253549	n:2360000
KS ci ratio: 1.099682e-01	ci left: 5.085379e-04	ci right 5.681226e-04	k: 1269	n:2360000
UGT1A9   2360000 perm   2648 sec   (891 perm/sec)   p_kst 5.377119e-04   p_cons 9.548936e-01   p_joint 1.068644e-03

Joint ci ratio: 7.784598e-02	ci left: 1.027163e-03	ci right 1.110772e-03	k: 2532	n:2370000
Cons ci ratio: 5.534118e-04	ci left: 9.546300e-01	ci right 9.551588e-01	k: 2263101	n:2370000
KS ci ratio: 1.097094e-01	ci left: 5.088542e-04	ci right 5.683266e-04	k: 1275	n:2370000
UGT1A9   2370000 perm   2667 sec   (889 perm/sec)   p_kst 5.379747e-04   p_cons 9.548949e-01   p_joint 1.068354e-03

Joint ci ratio: 7.763168e-02	ci left: 1.028615e-03	ci right 1.112102e-03	k: 2546	n:2380000
Cons ci ratio: 5.523097e-04	ci left: 9.546208e-01	ci right 9.551486e-01	k: 2272627	n:2380000
KS ci ratio: 1.093244e-01	ci left: 5.103941e-04	ci right 5.698237e-04	k: 1284	n:2380000
UGT1A9   2380000 perm   2688 sec   (886 perm/sec)   p_kst 5.394958e-04   p_cons 9.548853e-01   p_joint 1.069748e-03

Joint ci ratio: 7.749491e-02	ci left: 1.028004e-03	ci right 1.111288e-03	k: 2555	n:2390000
Cons ci ratio: 5.510724e-04	ci left: 9.546340e-01	ci right 9.551607e-01	k: 2282206	n:2390000
KS ci ratio: 1.091971e-01	ci left: 5.094795e-04	ci right 5.687290e-04	k: 1287	n:2390000
UGT1A9   2390000 perm   2708 sec   (883 perm/sec)   p_kst 5.384937e-04   p_cons 9.548979e-01   p_joint 1.069038e-03

Joint ci ratio: 7.737397e-02	ci left: 1.026990e-03	ci right 1.110055e-03	k: 2563	n:2400000
Cons ci ratio: 5.499018e-04	ci left: 9.546379e-01	ci right 9.551635e-01	k: 2291763	n:2400000
KS ci ratio: 1.088175e-01	ci left: 5.110045e-04	ci right 5.702115e-04	k: 1296	n:2400000
UGT1A9   2400000 perm   2728 sec   (880 perm/sec)   p_kst 5.400000e-04   p_cons 9.549013e-01   p_joint 1.067917e-03

Joint ci ratio: 7.717852e-02	ci left: 1.028018e-03	ci right 1.110947e-03	k: 2576	n:2410000
Cons ci ratio: 5.487148e-04	ci left: 9.546456e-01	ci right 9.551699e-01	k: 2301329	n:2410000
KS ci ratio: 1.085250e-01	ci left: 5.117097e-04	ci right 5.708289e-04	k: 1303	n:2410000
UGT1A9   2410000 perm   2748 sec   (877 perm/sec)   p_kst 5.406639e-04   p_cons 9.549083e-01   p_joint 1.068880e-03

Joint ci ratio: 7.701432e-02	ci left: 1.028228e-03	ci right 1.110990e-03	k: 2587	n:2420000
Cons ci ratio: 5.476563e-04	ci left: 9.546341e-01	ci right 9.551574e-01	k: 2310849	n:2420000
KS ci ratio: 1.082761e-01	ci left: 5.120074e-04	ci right 5.710167e-04	k: 1309	n:2420000
UGT1A9   2420000 perm   2768 sec   (874 perm/sec)   p_kst 5.409091e-04   p_cons 9.548963e-01   p_joint 1.069008e-03

Joint ci ratio: 7.688078e-02	ci left: 1.027629e-03	ci right 1.110193e-03	k: 2596	n:2430000
Cons ci ratio: 5.464942e-04	ci left: 9.546400e-01	ci right 9.551622e-01	k: 2320411	n:2430000
KS ci ratio: 1.079880e-01	ci left: 5.127031e-04	ci right 5.716253e-04	k: 1316	n:2430000
UGT1A9   2430000 perm   2789 sec   (871 perm/sec)   p_kst 5.415638e-04   p_cons 9.549016e-01   p_joint 1.068313e-03

Joint ci ratio: 7.668904e-02	ci left: 1.028643e-03	ci right 1.111073e-03	k: 2609	n:2440000
Cons ci ratio: 5.453629e-04	ci left: 9.546422e-01	ci right 9.551633e-01	k: 2329964	n:2440000
KS ci ratio: 1.076208e-01	ci left: 5.141909e-04	ci right 5.730705e-04	k: 1325	n:2440000
UGT1A9   2440000 perm   2809 sec   (869 perm/sec)   p_kst 5.430328e-04   p_cons 9.549033e-01   p_joint 1.069262e-03

Joint ci ratio: 7.652794e-02	ci left: 1.028848e-03	ci right 1.111114e-03	k: 2620	n:2450000
Cons ci ratio: 5.443417e-04	ci left: 9.546279e-01	ci right 9.551481e-01	k: 2339477	n:2450000
KS ci ratio: 1.073781e-01	ci left: 5.144753e-04	ci right 5.732462e-04	k: 1331	n:2450000
UGT1A9   2450000 perm   2830 sec   (866 perm/sec)   p_kst 5.432653e-04   p_cons 9.548886e-01   p_joint 1.069388e-03

Joint ci ratio: 7.641146e-02	ci left: 1.027856e-03	ci right 1.109911e-03	k: 2628	n:2460000
Cons ci ratio: 5.433338e-04	ci left: 9.546126e-01	ci right 9.551318e-01	k: 2348987	n:2460000
KS ci ratio: 1.072977e-01	ci left: 5.131751e-04	ci right 5.717508e-04	k: 1333	n:2460000
UGT1A9   2460000 perm   2851 sec   (863 perm/sec)   p_kst 5.418699e-04   p_cons 9.548728e-01   p_joint 1.068293e-03

Joint ci ratio: 7.628103e-02	ci left: 1.027269e-03	ci right 1.109131e-03	k: 2637	n:2470000
Cons ci ratio: 5.421965e-04	ci left: 9.546189e-01	ci right 9.551371e-01	k: 2358550	n:2470000
KS ci ratio: 1.070172e-01	ci left: 5.138556e-04	ci right 5.723460e-04	k: 1340	n:2470000
UGT1A9   2470000 perm   2872 sec   (860 perm/sec)   p_kst 5.425101e-04   p_cons 9.548785e-01   p_joint 1.067611e-03

Joint ci ratio: 7.607937e-02	ci left: 1.028664e-03	ci right 1.110411e-03	k: 2651	n:2480000
Cons ci ratio: 5.410637e-04	ci left: 9.546256e-01	ci right 9.551427e-01	k: 2368114	n:2480000
KS ci ratio: 1.066598e-01	ci left: 5.153157e-04	ci right 5.737641e-04	k: 1349	n:2480000
UGT1A9   2480000 perm   2894 sec   (857 perm/sec)   p_kst 5.439516e-04   p_cons 9.548847e-01   p_joint 1.068952e-03

Joint ci ratio: 7.599352e-02	ci left: 1.026897e-03	ci right 1.108407e-03	k: 2657	n:2490000
Cons ci ratio: 5.399657e-04	ci left: 9.546278e-01	ci right 9.551438e-01	k: 2377667	n:2490000
KS ci ratio: 1.065416e-01	ci left: 5.144188e-04	ci right 5.726967e-04	k: 1352	n:2490000
UGT1A9   2490000 perm   2916 sec   (854 perm/sec)   p_kst 5.429719e-04   p_cons 9.548863e-01   p_joint 1.067068e-03

Joint ci ratio: 7.580833e-02	ci left: 1.027890e-03	ci right 1.109272e-03	k: 2670	n:2500000
Cons ci ratio: 5.388017e-04	ci left: 9.546416e-01	ci right 9.551565e-01	k: 2387249	n:2500000
KS ci ratio: 1.063845e-01	ci left: 5.139185e-04	ci right 5.720485e-04	k: 1356	n:2500000
UGT1A9   2500000 perm   2939 sec   (851 perm/sec)   p_kst 5.424000e-04   p_cons 9.548996e-01   p_joint 1.068000e-03

Joint ci ratio: 7.569509e-02	ci left: 1.026922e-03	ci right 1.108101e-03	k: 2678	n:2510000
Cons ci ratio: 5.377398e-04	ci left: 9.546401e-01	ci right 9.551540e-01	k: 2396793	n:2510000
KS ci ratio: 1.061500e-01	ci left: 5.141979e-04	ci right 5.722234e-04	k: 1362	n:2510000
UGT1A9   2510000 perm   2960 sec   (848 perm/sec)   p_kst 5.426295e-04   p_cons 9.548976e-01   p_joint 1.066932e-03

Joint ci ratio: 7.704577e-02	ci left: 9.866462e-04	ci right 1.066095e-03	k: 2585	n:2520000
Cons ci ratio: 5.366222e-04	ci left: 9.546486e-01	ci right 9.551614e-01	k: 2406362	n:2520000
KS ci ratio: 1.058785e-01	ci left: 5.148616e-04	ci right 5.728041e-04	k: 1369	n:2520000
UGT1A9   2520000 perm   2983 sec   (845 perm/sec)   p_kst 5.432540e-04   p_cons 9.549056e-01   p_joint 1.025794e-03

Joint ci ratio: 7.015848e-02	ci left: 1.189166e-03	ci right 1.276014e-03	k: 3117	n:2530000
Cons ci ratio: 5.199975e-04	ci left: 9.571286e-01	ci right 9.576268e-01	k: 2422167	n:2530000
KS ci ratio: 1.055706e-01	ci left: 5.159050e-04	ci right 5.737856e-04	k: 1377	n:2530000
UGT1A9   2530000 perm   3004 sec   (842 perm/sec)   p_kst 5.442688e-04   p_cons 9.573783e-01   p_joint 1.232016e-03

Joint ci ratio: 7.019246e-02	ci left: 1.183323e-03	ci right 1.269789e-03	k: 3114	n:2540000
Cons ci ratio: 5.189648e-04	ci left: 9.571304e-01	ci right 9.576276e-01	k: 2431744	n:2540000
KS ci ratio: 1.052275e-01	ci left: 5.173238e-04	ci right 5.751633e-04	k: 1386	n:2540000
UGT1A9   2540000 perm   3025 sec   (840 perm/sec)   p_kst 5.456693e-04   p_cons 9.573795e-01   p_joint 1.225984e-03

Joint ci ratio: 7.003523e-02	ci left: 1.184077e-03	ci right 1.270396e-03	k: 3128	n:2550000
Cons ci ratio: 5.179831e-04	ci left: 9.571251e-01	ci right 9.576213e-01	k: 2441303	n:2550000
KS ci ratio: 1.050761e-01	ci left: 5.168225e-04	ci right 5.745176e-04	k: 1390	n:2550000
UGT1A9   2550000 perm   3048 sec   (837 perm/sec)   p_kst 5.450980e-04   p_cons 9.573737e-01   p_joint 1.226667e-03

Joint ci ratio: 7.040812e-02	ci left: 1.166787e-03	ci right 1.252317e-03	k: 3095	n:2560000
Cons ci ratio: 5.170069e-04	ci left: 9.571198e-01	ci right 9.576151e-01	k: 2450862	n:2560000
KS ci ratio: 1.049254e-01	ci left: 5.163251e-04	ci right 5.738770e-04	k: 1394	n:2560000
UGT1A9   2560000 perm   3069 sec   (834 perm/sec)   p_kst 5.445312e-04   p_cons 9.573680e-01   p_joint 1.208984e-03

Joint ci ratio: 7.029471e-02	ci left: 1.166070e-03	ci right 1.251403e-03	k: 3105	n:2570000
Cons ci ratio: 5.159107e-04	ci left: 9.571344e-01	ci right 9.576287e-01	k: 2460472	n:2570000
KS ci ratio: 1.048503e-01	ci left: 5.150738e-04	ci right 5.724426e-04	k: 1396	n:2570000
UGT1A9   2570000 perm   3091 sec   (831 perm/sec)   p_kst 5.431907e-04   p_cons 9.573821e-01   p_joint 1.208171e-03

Joint ci ratio: 7.011430e-02	ci left: 1.167643e-03	ci right 1.252863e-03	k: 3121	n:2580000
Cons ci ratio: 5.150146e-04	ci left: 9.571183e-01	ci right 9.576117e-01	k: 2470003	n:2580000
KS ci ratio: 1.044769e-01	ci left: 5.168520e-04	ci right 5.742012e-04	k: 1406	n:2580000
UGT1A9   2580000 perm   3113 sec   (829 perm/sec)   p_kst 5.449612e-04   p_cons 9.573655e-01   p_joint 1.209690e-03

Joint ci ratio: 6.997994e-02	ci left: 1.167686e-03	ci right 1.252740e-03	k: 3133	n:2590000
Cons ci ratio: 5.140477e-04	ci left: 9.571142e-01	ci right 9.576067e-01	k: 2479565	n:2590000
KS ci ratio: 1.043288e-01	ci left: 5.163605e-04	ci right 5.735689e-04	k: 1410	n:2590000
UGT1A9   2590000 perm   3135 sec   (826 perm/sec)   p_kst 5.444015e-04   p_cons 9.573610e-01   p_joint 1.209653e-03

Joint ci ratio: 6.983524e-02	ci left: 1.168108e-03	ci right 1.253009e-03	k: 3146	n:2600000
Cons ci ratio: 5.130693e-04	ci left: 9.571129e-01	ci right 9.576045e-01	k: 2489134	n:2600000
KS ci ratio: 1.041077e-01	ci left: 5.166220e-04	ci right 5.737307e-04	k: 1416	n:2600000
UGT1A9   2600000 perm   3157 sec   (824 perm/sec)   p_kst 5.446154e-04   p_cons 9.573592e-01   p_joint 1.210000e-03

Joint ci ratio: 6.969143e-02	ci left: 1.168526e-03	ci right 1.253276e-03	k: 3159	n:2610000
Cons ci ratio: 5.120365e-04	ci left: 9.571213e-01	ci right 9.576118e-01	k: 2498728	n:2610000
KS ci ratio: 1.039245e-01	ci left: 5.165085e-04	ci right 5.734980e-04	k: 1421	n:2610000
UGT1A9   2610000 perm   3180 sec   (821 perm/sec)   p_kst 5.444444e-04   p_cons 9.573670e-01   p_joint 1.210345e-03

Joint ci ratio: 7.138529e-02	ci left: 1.108573e-03	ci right 1.191010e-03	k: 3011	n:2620000
Cons ci ratio: 5.110576e-04	ci left: 9.571218e-01	ci right 9.576115e-01	k: 2508302	n:2620000
KS ci ratio: 1.037059e-01	ci left: 5.167677e-04	ci right 5.736586e-04	k: 1427	n:2620000
UGT1A9   2620000 perm   3202 sec   (818 perm/sec)   p_kst 5.446565e-04   p_cons 9.573672e-01   p_joint 1.149237e-03

Joint ci ratio: 7.126710e-02	ci left: 1.108092e-03	ci right 1.190351e-03	k: 3021	n:2630000
Cons ci ratio: 5.100510e-04	ci left: 9.571278e-01	ci right 9.576165e-01	k: 2517890	n:2630000
KS ci ratio: 1.035248e-01	ci left: 5.166547e-04	ci right 5.734278e-04	k: 1432	n:2630000
UGT1A9   2630000 perm   3224 sec   (816 perm/sec)   p_kst 5.444867e-04   p_cons 9.573726e-01   p_joint 1.148669e-03

Joint ci ratio: 7.107912e-02	ci left: 1.109848e-03	ci right 1.192011e-03	k: 3037	n:2640000
Cons ci ratio: 5.090149e-04	ci left: 9.571394e-01	ci right 9.576271e-01	k: 2527493	n:2640000
KS ci ratio: 1.032012e-01	ci left: 5.180186e-04	ci right 5.747529e-04	k: 1441	n:2640000
UGT1A9   2640000 perm   3246 sec   (813 perm/sec)   p_kst 5.458333e-04   p_cons 9.573837e-01   p_joint 1.150379e-03

Joint ci ratio: 7.085779e-02	ci left: 1.112702e-03	ci right 1.194809e-03	k: 3056	n:2650000
Cons ci ratio: 5.080203e-04	ci left: 9.571452e-01	ci right 9.576319e-01	k: 2537081	n:2650000
KS ci ratio: 1.028451e-01	ci left: 5.197402e-04	ci right 5.764548e-04	k: 1451	n:2650000
UGT1A9   2650000 perm   3268 sec   (811 perm/sec)   p_kst 5.475472e-04   p_cons 9.573891e-01   p_joint 1.153208e-03

Joint ci ratio: 7.071912e-02	ci left: 1.112950e-03	ci right 1.194909e-03	k: 3068	n:2660000
Cons ci ratio: 5.070876e-04	ci left: 9.571419e-01	ci right 9.576278e-01	k: 2546645	n:2660000
KS ci ratio: 1.028098e-01	ci left: 5.181526e-04	ci right 5.746733e-04	k: 1452	n:2660000
UGT1A9   2660000 perm   3290 sec   (808 perm/sec)   p_kst 5.458647e-04   p_cons 9.573853e-01   p_joint 1.153383e-03

Joint ci ratio: 7.054688e-02	ci left: 1.114301e-03	ci right 1.196151e-03	k: 3083	n:2670000
Cons ci ratio: 5.061623e-04	ci left: 9.571383e-01	ci right 9.576233e-01	k: 2556208	n:2670000
KS ci ratio: 1.025630e-01	ci left: 5.187663e-04	ci right 5.752100e-04	k: 1459	n:2670000
UGT1A9   2670000 perm   3313 sec   (806 perm/sec)   p_kst 5.464419e-04   p_cons 9.573813e-01   p_joint 1.154682e-03

Joint ci ratio: 7.068485e-02	ci left: 1.105744e-03	ci right 1.187131e-03	k: 3071	n:2680000
Cons ci ratio: 5.051473e-04	ci left: 9.571500e-01	ci right 9.576340e-01	k: 2565812	n:2680000
KS ci ratio: 1.021787e-01	ci left: 5.208300e-04	ci right 5.772732e-04	k: 1470	n:2680000
UGT1A9   2680000 perm   3335 sec   (804 perm/sec)   p_kst 5.485075e-04   p_cons 9.573925e-01   p_joint 1.145896e-03

Joint ci ratio: 7.054719e-02	ci left: 1.106016e-03	ci right 1.187257e-03	k: 3083	n:2690000
Cons ci ratio: 5.041913e-04	ci left: 9.571531e-01	ci right 9.576362e-01	k: 2575393	n:2690000
KS ci ratio: 1.020055e-01	ci left: 5.207051e-04	ci right 5.770333e-04	k: 1475	n:2690000
UGT1A9   2690000 perm   3358 sec   (801 perm/sec)   p_kst 5.483271e-04   p_cons 9.573952e-01   p_joint 1.146097e-03

Joint ci ratio: 7.035348e-02	ci left: 1.108105e-03	ci right 1.189267e-03	k: 3100	n:2700000
Cons ci ratio: 5.032269e-04	ci left: 9.571584e-01	ci right 9.576406e-01	k: 2584980	n:2700000
KS ci ratio: 1.017301e-01	ci left: 5.216641e-04	ci right 5.779346e-04	k: 1483	n:2700000
UGT1A9   2700000 perm   3380 sec   (799 perm/sec)   p_kst 5.492593e-04   p_cons 9.574000e-01   p_joint 1.148148e-03

Joint ci ratio: 7.022903e-02	ci left: 1.108004e-03	ci right 1.189009e-03	k: 3111	n:2710000
Cons ci ratio: 5.022817e-04	ci left: 9.571615e-01	ci right 9.576427e-01	k: 2594561	n:2710000
KS ci ratio: 1.015592e-01	ci left: 5.215372e-04	ci right 5.776939e-04	k: 1488	n:2710000
UGT1A9   2710000 perm   3402 sec   (797 perm/sec)   p_kst 5.490775e-04   p_cons 9.574026e-01   p_joint 1.147970e-03

Joint ci ratio: 7.011649e-02	ci left: 1.107542e-03	ci right 1.188379e-03	k: 3121	n:2720000
Cons ci ratio: 5.012807e-04	ci left: 9.571744e-01	ci right 9.576547e-01	k: 2604169	n:2720000
KS ci ratio: 1.013552e-01	ci left: 5.217697e-04	ci right 5.778319e-04	k: 1494	n:2720000
UGT1A9   2720000 perm   3427 sec   (794 perm/sec)   p_kst 5.492647e-04   p_cons 9.574151e-01   p_joint 1.147426e-03

Joint ci ratio: 7.003807e-02	ci left: 1.106004e-03	ci right 1.186635e-03	k: 3128	n:2730000
Cons ci ratio: 5.003486e-04	ci left: 9.571770e-01	ci right 9.576564e-01	k: 2613749	n:2730000
KS ci ratio: 1.012199e-01	ci left: 5.212866e-04	ci right 5.772176e-04	k: 1498	n:2730000
UGT1A9   2730000 perm   3450 sec   (791 perm/sec)   p_kst 5.487179e-04   p_cons 9.574172e-01   p_joint 1.145788e-03

Joint ci ratio: 6.990415e-02	ci left: 1.106271e-03	ci right 1.186760e-03	k: 3140	n:2740000
Cons ci ratio: 4.994105e-04	ci left: 9.571814e-01	ci right 9.576599e-01	k: 2623334	n:2740000
KS ci ratio: 1.010515e-01	ci left: 5.211627e-04	ci right 5.769819e-04	k: 1503	n:2740000
UGT1A9   2740000 perm   3473 sec   (789 perm/sec)   p_kst 5.485401e-04   p_cons 9.574212e-01   p_joint 1.145985e-03

Joint ci ratio: 7.027485e-02	ci left: 1.090458e-03	ci right 1.170235e-03	k: 3107	n:2750000
Cons ci ratio: 4.984888e-04	ci left: 9.571840e-01	ci right 9.576616e-01	k: 2632914	n:2750000
KS ci ratio: 1.008171e-01	ci left: 5.217488e-04	ci right 5.774935e-04	k: 1510	n:2750000
UGT1A9   2750000 perm   3495 sec   (787 perm/sec)   p_kst 5.490909e-04   p_cons 9.574233e-01   p_joint 1.129818e-03

Joint ci ratio: 7.022976e-02	ci left: 1.087931e-03	ci right 1.167470e-03	k: 3111	n:2760000
Cons ci ratio: 4.975854e-04	ci left: 9.571843e-01	ci right 9.576611e-01	k: 2642488	n:2760000
KS ci ratio: 1.007506e-01	ci left: 5.205648e-04	ci right 5.761440e-04	k: 1512	n:2760000
UGT1A9   2760000 perm   3518 sec   (784 perm/sec)   p_kst 5.478261e-04   p_cons 9.574232e-01   p_joint 1.127174e-03

Joint ci ratio: 7.010598e-02	ci left: 1.087905e-03	ci right 1.167296e-03	k: 3122	n:2770000
Cons ci ratio: 4.966738e-04	ci left: 9.571869e-01	ci right 9.576627e-01	k: 2652068	n:2770000
KS ci ratio: 1.004852e-01	ci left: 5.215009e-04	ci right 5.770248e-04	k: 1520	n:2770000
UGT1A9   2770000 perm   3543 sec   (782 perm/sec)   p_kst 5.487365e-04   p_cons 9.574253e-01   p_joint 1.127076e-03

Joint ci ratio: 7.068631e-02	ci left: 1.065969e-03	ci right 1.144429e-03	k: 3071	n:2780000
Cons ci ratio: 4.958327e-04	ci left: 9.571785e-01	ci right 9.576536e-01	k: 2661618	n:2780000
KS ci ratio: 1.004523e-01	ci left: 5.199756e-04	ci right 5.753179e-04	k: 1521	n:2780000
UGT1A9   2780000 perm   3566 sec   (780 perm/sec)   p_kst 5.471223e-04   p_cons 9.574165e-01   p_joint 1.104676e-03

Joint ci ratio: 7.053719e-02	ci left: 1.066725e-03	ci right 1.145069e-03	k: 3084	n:2790000
Cons ci ratio: 4.950002e-04	ci left: 9.571696e-01	ci right 9.576438e-01	k: 2671166	n:2790000
KS ci ratio: 1.002548e-01	ci left: 5.202085e-04	ci right 5.754604e-04	k: 1527	n:2790000
UGT1A9   2790000 perm   3590 sec   (777 perm/sec)   p_kst 5.473118e-04   p_cons 9.574072e-01   p_joint 1.105376e-03

Joint ci ratio: 7.043455e-02	ci left: 1.066073e-03	ci right 1.144250e-03	k: 3093	n:2800000
Cons ci ratio: 4.941719e-04	ci left: 9.571607e-01	ci right 9.576341e-01	k: 2680714	n:2800000
KS ci ratio: 1.001239e-01	ci left: 5.197434e-04	ci right 5.748695e-04	k: 1531	n:2800000
UGT1A9   2800000 perm   3613 sec   (775 perm/sec)   p_kst 5.467857e-04   p_cons 9.573979e-01   p_joint 1.104643e-03

Joint ci ratio: 7.024177e-02	ci left: 1.068223e-03	ci right 1.146334e-03	k: 3110	n:2810000
Cons ci ratio: 4.933154e-04	ci left: 9.571572e-01	ci right 9.576298e-01	k: 2690277	n:2810000
KS ci ratio: 9.992840e-02	ci left: 5.199756e-04	ci right 5.750123e-04	k: 1537	n:2810000
UGT1A9   2810000 perm   3636 sec   (773 perm/sec)   p_kst 5.469751e-04   p_cons 9.573940e-01   p_joint 1.106762e-03

Outputting figure to mutsig2_images.part000000000186/UGT1A9.5_1613_2810000_0.00054698_0.95739_0.0011068.png
                gene_name: UGT1A9
               theta_stop: 0.100 
                    nperm: 2810000 
                     p_ks: 0.00055 
        ci_ks_bounds_left: 0.00052 
       ci_ks_bounds_right: 0.00058 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0011 

Current progress: 45 percent done.
UGT3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149320e-01	ci left: 9.818038e-02	ci right 1.102513e-01	k: 1041	n:10000
Cons ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
KS ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
UGT3A2   10000 perm   2 sec   (5830 perm/sec)   p_kst 7.500000e-02   p_cons 4.975000e-01   p_joint 1.041000e-01

Joint ci ratio: 6.968580e-02	ci left: 1.318193e-01	ci right 1.413866e-01	k: 2731	n:20000
Cons ci ratio: 2.754246e-02	ci left: 4.961956e-01	ci right 5.101035e-01	k: 10063	n:20000
KS ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
UGT3A2   20000 perm   4 sec   (5202 perm/sec)   p_kst 7.385000e-02   p_cons 5.031500e-01   p_joint 1.365500e-01

Outputting figure to mutsig2_images.part000000000186/UGT3A2.5_1600_20000_0.07385_0.50315_0.13655.png
                gene_name: UGT3A2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 47 percent done.
UBQLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
Cons ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
KS ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
UBQLN2   10000 perm   2 sec   (5746 perm/sec)   p_kst 2.009000e-01   p_cons 9.405000e-01   p_joint 3.319000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN2.4_1879_10000_0.2009_0.9405_0.3319.png
                gene_name: UBQLN2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
UBTFL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
Cons ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
KS ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
UBTFL1   10000 perm   2 sec   (5962 perm/sec)   p_kst 7.174000e-01   p_cons 3.030000e-02   p_joint 1.025000e-01

Joint ci ratio: 7.830386e-02	ci left: 1.069730e-01	ci right 1.157403e-01	k: 2226	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 1.741387e-02	ci left: 7.107009e-01	ci right 7.232360e-01	k: 14340	n:20000
UBTFL1   20000 perm   4 sec   (5286 perm/sec)   p_kst 7.170000e-01   p_cons 3.070000e-02   p_joint 1.113000e-01

Joint ci ratio: 9.566566e-02	ci left: 5.045901e-02	ci right 5.556133e-02	k: 1589	n:30000
Cons ci ratio: 1.347532e-01	ci left: 2.558194e-02	ci right 2.931033e-02	k: 822	n:30000
KS ci ratio: 1.430609e-02	ci left: 7.093519e-01	ci right 7.196065e-01	k: 21435	n:30000
UBTFL1   30000 perm   6 sec   (5035 perm/sec)   p_kst 7.145000e-01   p_cons 2.740000e-02   p_joint 5.296667e-02

Joint ci ratio: 6.161136e-02	ci left: 8.906153e-02	ci right 9.474788e-02	k: 3675	n:40000
Cons ci ratio: 1.154265e-01	ci left: 2.640513e-02	ci right 2.966387e-02	k: 1120	n:40000
KS ci ratio: 1.237810e-02	ci left: 7.104226e-01	ci right 7.192961e-01	k: 28595	n:40000
UBTFL1   40000 perm   8 sec   (4873 perm/sec)   p_kst 7.148750e-01   p_cons 2.800000e-02   p_joint 9.187500e-02

Joint ci ratio: 5.701298e-02	ci left: 8.391196e-02	ci right 8.885619e-02	k: 4318	n:50000
Cons ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
KS ci ratio: 1.108695e-02	ci left: 7.103180e-01	ci right 7.182571e-01	k: 35715	n:50000
UBTFL1   50000 perm   11 sec   (4735 perm/sec)   p_kst 7.143000e-01   p_cons 2.870000e-02   p_joint 8.636000e-02

Joint ci ratio: 5.095444e-02	ci left: 8.749100e-02	ci right 9.208210e-02	k: 5386	n:60000
Cons ci ratio: 9.360340e-02	ci left: 2.706907e-02	ci right 2.974347e-02	k: 1703	n:60000
KS ci ratio: 1.015982e-02	ci left: 7.090942e-01	ci right 7.163519e-01	k: 42764	n:60000
UBTFL1   60000 perm   13 sec   (4622 perm/sec)   p_kst 7.127333e-01   p_cons 2.838333e-02   p_joint 8.976667e-02

Outputting figure to mutsig2_images.part000000000186/UBTFL1.4_1185_60000_0.71273_0.028383_0.089767.png
                gene_name: UBTFL1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 50 percent done.
UFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
UFC1   10000 perm   2 sec   (6285 perm/sec)   p_kst 1.232000e-01   p_cons 6.010000e-02   p_joint 6.010000e-02

Joint ci ratio: 1.075810e-01	ci left: 5.889161e-02	ci right 6.563634e-02	k: 1244	n:20000
Cons ci ratio: 1.072141e-01	ci left: 5.928153e-02	ci right 6.604631e-02	k: 1252	n:20000
KS ci ratio: 7.358769e-02	ci left: 1.196590e-01	ci right 1.288505e-01	k: 2484	n:20000
UFC1   20000 perm   4 sec   (5567 perm/sec)   p_kst 1.242000e-01   p_cons 6.260000e-02   p_joint 6.220000e-02

Joint ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
Cons ci ratio: 8.750336e-02	ci left: 5.994991e-02	ci right 6.546848e-02	k: 1880	n:30000
KS ci ratio: 5.930135e-02	ci left: 1.233504e-01	ci right 1.309219e-01	k: 3813	n:30000
UFC1   30000 perm   6 sec   (5285 perm/sec)   p_kst 1.271000e-01   p_cons 6.266667e-02   p_joint 6.036667e-02

Outputting figure to mutsig2_images.part000000000186/UFC1.4_528_30000_0.1271_0.062667_0.060367.png
                gene_name: UFC1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 52 percent done.
UGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
KS ci ratio: 1.175161e-02	ci left: 9.120382e-01	ci right 9.229172e-01	k: 9176	n:10000
UGDH   10000 perm   2 sec   (5941 perm/sec)   p_kst 9.176000e-01   p_cons 3.188000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGDH.4_1529_10000_0.9176_0.3188_1.png
                gene_name: UGDH
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
UGT1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
UGT1A1   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.760000e-02   p_cons 6.503000e-01   p_joint 1.183000e-01

Joint ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
Cons ci ratio: 2.003376e-02	ci left: 6.502228e-01	ci right 6.634315e-01	k: 13137	n:20000
KS ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
UGT1A1   20000 perm   4 sec   (5418 perm/sec)   p_kst 4.590000e-02   p_cons 6.568500e-01   p_joint 8.620000e-02

Joint ci ratio: 6.005227e-02	ci left: 1.206194e-01	ci right 1.281202e-01	k: 3730	n:30000
Cons ci ratio: 1.625805e-02	ci left: 6.542061e-01	ci right 6.649629e-01	k: 19788	n:30000
KS ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
UGT1A1   30000 perm   6 sec   (5137 perm/sec)   p_kst 4.510000e-02   p_cons 6.596000e-01   p_joint 1.243333e-01

Joint ci ratio: 5.931985e-02	ci left: 9.549780e-02	ci right 1.013606e-01	k: 3936	n:40000
Cons ci ratio: 1.406979e-02	ci left: 6.552585e-01	ci right 6.645683e-01	k: 26397	n:40000
KS ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
UGT1A1   40000 perm   8 sec   (4934 perm/sec)   p_kst 4.547500e-02   p_cons 6.599250e-01   p_joint 9.840000e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A1.4_1622_40000_0.045475_0.65992_0.0984.png
                gene_name: UGT1A1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 55 percent done.
UGT1A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
Cons ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
KS ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
UGT1A6   10000 perm   2 sec   (5784 perm/sec)   p_kst 7.200000e-03   p_cons 6.315000e-01   p_joint 3.170000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 2.112983e-02	ci left: 6.257242e-01	ci right 6.391373e-01	k: 12649	n:20000
KS ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
UGT1A6   20000 perm   4 sec   (5139 perm/sec)   p_kst 7.850000e-03   p_cons 6.324500e-01   p_joint 1.635000e-02

Joint ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
Cons ci ratio: 1.731770e-02	ci left: 6.252097e-01	ci right 6.361650e-01	k: 18921	n:30000
KS ci ratio: 2.569179e-01	ci left: 6.710907e-03	ci right 8.719528e-03	k: 230	n:30000
UGT1A6   30000 perm   6 sec   (4895 perm/sec)   p_kst 7.666667e-03   p_cons 6.307000e-01   p_joint 1.340000e-02

Joint ci ratio: 1.276712e-01	ci left: 2.155318e-02	ci right 2.451662e-02	k: 920	n:40000
Cons ci ratio: 1.530505e-02	ci left: 6.164251e-01	ci right 6.259573e-01	k: 24848	n:40000
KS ci ratio: 2.297509e-01	ci left: 6.394890e-03	ci right 8.077838e-03	k: 288	n:40000
UGT1A6   40000 perm   8 sec   (4753 perm/sec)   p_kst 7.200000e-03   p_cons 6.212000e-01   p_joint 2.300000e-02

Joint ci ratio: 1.325935e-01	ci left: 1.603978e-02	ci right 1.833677e-02	k: 858	n:50000
Cons ci ratio: 1.367245e-02	ci left: 6.175124e-01	ci right 6.260335e-01	k: 31089	n:50000
KS ci ratio: 2.035887e-01	ci left: 6.610526e-03	ci right 8.127513e-03	k: 367	n:50000
UGT1A6   50000 perm   11 sec   (4645 perm/sec)   p_kst 7.340000e-03   p_cons 6.217800e-01   p_joint 1.716000e-02

Joint ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
Cons ci ratio: 1.240915e-02	ci left: 6.206110e-01	ci right 6.283770e-01	k: 37470	n:60000
KS ci ratio: 1.866184e-01	ci left: 6.618540e-03	ci right 7.996428e-03	k: 437	n:60000
UGT1A6   60000 perm   13 sec   (4551 perm/sec)   p_kst 7.283333e-03   p_cons 6.245000e-01   p_joint 2.410000e-02

Joint ci ratio: 9.628938e-02	ci left: 2.201377e-02	ci right 2.425457e-02	k: 1618	n:70000
Cons ci ratio: 1.146559e-02	ci left: 6.218451e-01	ci right 6.290303e-01	k: 43781	n:70000
KS ci ratio: 1.622334e-01	ci left: 7.600078e-03	ci right 8.955443e-03	k: 578	n:70000
UGT1A6   70000 perm   16 sec   (4468 perm/sec)   p_kst 8.257143e-03   p_cons 6.254429e-01   p_joint 2.311429e-02

Joint ci ratio: 9.491707e-02	ci left: 1.988326e-02	ci right 2.187670e-02	k: 1669	n:80000
Cons ci ratio: 1.072779e-02	ci left: 6.219601e-01	ci right 6.286808e-01	k: 50026	n:80000
KS ci ratio: 1.514919e-01	ci left: 7.670918e-03	ci right 8.940127e-03	k: 663	n:80000
UGT1A6   80000 perm   18 sec   (4387 perm/sec)   p_kst 8.287500e-03   p_cons 6.253250e-01   p_joint 2.086250e-02

Joint ci ratio: 8.180621e-02	ci left: 2.385910e-02	ci right 2.590501e-02	k: 2238	n:90000
Cons ci ratio: 1.012057e-02	ci left: 6.218610e-01	ci right 6.281976e-01	k: 56253	n:90000
KS ci ratio: 1.431181e-01	ci left: 7.674739e-03	ci right 8.868392e-03	k: 743	n:90000
UGT1A6   90000 perm   21 sec   (4309 perm/sec)   p_kst 8.255556e-03   p_cons 6.250333e-01   p_joint 2.486667e-02

Joint ci ratio: 8.200424e-02	ci left: 2.142310e-02	ci right 2.326475e-02	k: 2233	n:100000
Cons ci ratio: 9.594739e-03	ci left: 6.223414e-01	ci right 6.283513e-01	k: 62535	n:100000
KS ci ratio: 1.357463e-01	ci left: 7.708333e-03	ci right 8.840467e-03	k: 826	n:100000
UGT1A6   100000 perm   24 sec   (4223 perm/sec)   p_kst 8.260000e-03   p_cons 6.253500e-01   p_joint 2.233000e-02

Joint ci ratio: 8.011666e-02	ci left: 2.044595e-02	ci right 2.216124e-02	k: 2342	n:110000
Cons ci ratio: 9.141401e-03	ci left: 6.228323e-01	ci right 6.285611e-01	k: 68827	n:110000
KS ci ratio: 1.297675e-01	ci left: 7.693118e-03	ci right 8.769416e-03	k: 904	n:110000
UGT1A6   110000 perm   26 sec   (4154 perm/sec)   p_kst 8.218182e-03   p_cons 6.257000e-01   p_joint 2.129091e-02

Joint ci ratio: 7.726368e-02	ci left: 2.018799e-02	ci right 2.181861e-02	k: 2519	n:120000
Cons ci ratio: 8.764848e-03	ci left: 6.222787e-01	ci right 6.277652e-01	k: 75003	n:120000
KS ci ratio: 1.238812e-01	ci left: 7.762116e-03	ci right 8.795192e-03	k: 992	n:120000
UGT1A6   120000 perm   29 sec   (4082 perm/sec)   p_kst 8.266667e-03   p_cons 6.250250e-01   p_joint 2.099167e-02

Joint ci ratio: 8.557510e-02	ci left: 1.520440e-02	ci right 1.657116e-02	k: 2064	n:130000
Cons ci ratio: 8.427668e-03	ci left: 6.220151e-01	ci right 6.272870e-01	k: 81205	n:130000
KS ci ratio: 1.195123e-01	ci left: 7.716924e-03	ci right 8.705202e-03	k: 1066	n:130000
UGT1A6   130000 perm   32 sec   (4010 perm/sec)   p_kst 8.200000e-03   p_cons 6.246538e-01   p_joint 1.587692e-02

Joint ci ratio: 8.656531e-02	ci left: 1.381042e-02	ci right 1.506695e-02	k: 2020	n:140000
Cons ci ratio: 8.112395e-03	ci left: 6.226153e-01	ci right 6.276938e-01	k: 87522	n:140000
KS ci ratio: 1.152194e-01	ci left: 7.727305e-03	ci right 8.678947e-03	k: 1147	n:140000
UGT1A6   140000 perm   36 sec   (3942 perm/sec)   p_kst 8.192857e-03   p_cons 6.251571e-01   p_joint 1.442857e-02

Joint ci ratio: 8.959841e-02	ci left: 1.203512e-02	ci right 1.317050e-02	k: 1889	n:150000
Cons ci ratio: 7.837831e-03	ci left: 6.226711e-01	ci right 6.275774e-01	k: 93769	n:150000
KS ci ratio: 1.114955e-01	ci left: 7.717406e-03	ci right 8.635091e-03	k: 1225	n:150000
UGT1A6   150000 perm   39 sec   (3878 perm/sec)   p_kst 8.166667e-03   p_cons 6.251267e-01   p_joint 1.259333e-02

Joint ci ratio: 8.725881e-02	ci left: 1.191241e-02	ci right 1.300537e-02	k: 1992	n:160000
Cons ci ratio: 7.590293e-03	ci left: 6.226663e-01	ci right 6.274167e-01	k: 100007	n:160000
KS ci ratio: 1.085734e-01	ci left: 7.642278e-03	ci right 8.525687e-03	k: 1292	n:160000
UGT1A6   160000 perm   42 sec   (3817 perm/sec)   p_kst 8.075000e-03   p_cons 6.250438e-01   p_joint 1.245000e-02

Joint ci ratio: 6.422876e-02	ci left: 2.075206e-02	ci right 2.213492e-02	k: 3644	n:170000
Cons ci ratio: 7.358073e-03	ci left: 6.230941e-01	ci right 6.277016e-01	k: 106318	n:170000
KS ci ratio: 1.054406e-01	ci left: 7.639275e-03	ci right 8.495276e-03	k: 1370	n:170000
UGT1A6   170000 perm   45 sec   (3763 perm/sec)   p_kst 8.058824e-03   p_cons 6.254000e-01   p_joint 2.143529e-02

Joint ci ratio: 6.263853e-02	ci left: 2.062700e-02	ci right 2.196626e-02	k: 3832	n:180000
Cons ci ratio: 7.155767e-03	ci left: 6.228310e-01	ci right 6.273094e-01	k: 112513	n:180000
KS ci ratio: 1.030673e-01	ci left: 7.561139e-03	ci right 8.388159e-03	k: 1434	n:180000
UGT1A6   180000 perm   49 sec   (3706 perm/sec)   p_kst 7.966667e-03   p_cons 6.250722e-01   p_joint 2.128889e-02

Joint ci ratio: 5.627728e-02	ci left: 2.419879e-02	ci right 2.560523e-02	k: 4730	n:190000
Cons ci ratio: 6.863431e-03	ci left: 6.297531e-01	ci right 6.340955e-01	k: 120066	n:190000
KS ci ratio: 1.006108e-01	ci left: 7.527344e-03	ci right 8.329884e-03	k: 1505	n:190000
UGT1A6   190000 perm   52 sec   (3654 perm/sec)   p_kst 7.921053e-03   p_cons 6.319263e-01   p_joint 2.489474e-02

Joint ci ratio: 5.308070e-02	ci left: 2.583993e-02	ci right 2.725384e-02	k: 5308	n:200000
Cons ci ratio: 6.693046e-03	ci left: 6.295717e-01	ci right 6.338045e-01	k: 126338	n:200000
KS ci ratio: 9.797803e-02	ci left: 7.550800e-03	ci right 8.333563e-03	k: 1587	n:200000
UGT1A6   200000 perm   55 sec   (3604 perm/sec)   p_kst 7.935000e-03   p_cons 6.316900e-01   p_joint 2.654000e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A6.4_1619_200000_0.007935_0.63169_0.02654.png
                gene_name: UGT1A6
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0076 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 57 percent done.
UHRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 4.147021e-02	ci left: 4.619752e-01	ci right 4.816412e-01	k: 4718	n:10000
UHRF2   10000 perm   2 sec   (5506 perm/sec)   p_kst 4.718000e-01   p_cons 1.164000e-01   p_joint 2.579000e-01

Joint ci ratio: 4.546763e-02	ci left: 2.647494e-01	ci right 2.771173e-01	k: 5418	n:20000
Cons ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
KS ci ratio: 2.926159e-02	ci left: 4.659600e-01	ci right 4.798479e-01	k: 9458	n:20000
UHRF2   20000 perm   4 sec   (4867 perm/sec)   p_kst 4.729000e-01   p_cons 1.180500e-01   p_joint 2.709000e-01

Outputting figure to mutsig2_images.part000000000186/UHRF2.4_2473_20000_0.4729_0.11805_0.2709.png
                gene_name: UHRF2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 59 percent done.
UBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
Cons ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
KS ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
UBP1   10000 perm   2 sec   (6630 perm/sec)   p_kst 5.944000e-01   p_cons 1.363000e-01   p_joint 3.766000e-01

Outputting figure to mutsig2_images.part000000000186/UBP1.3_1687_10000_0.5944_0.1363_0.3766.png
                gene_name: UBP1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
UBR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
Cons ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
KS ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
UBR3   10000 perm   2 sec   (4618 perm/sec)   p_kst 1.114000e-01   p_cons 9.275000e-01   p_joint 2.119000e-01

Joint ci ratio: 5.562776e-02	ci left: 1.933374e-01	ci right 2.044502e-01	k: 3977	n:20000
Cons ci ratio: 8.033090e-03	ci left: 9.187587e-01	ci right 9.262180e-01	k: 18451	n:20000
KS ci ratio: 7.777433e-02	ci left: 1.082998e-01	ci right 1.171132e-01	k: 2253	n:20000
UBR3   20000 perm   5 sec   (4163 perm/sec)   p_kst 1.126500e-01   p_cons 9.225500e-01   p_joint 1.988500e-01

Outputting figure to mutsig2_images.part000000000186/UBR3.3_5823_20000_0.11265_0.92255_0.19885.png
                gene_name: UBR3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 62 percent done.
UBR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
KS ci ratio: 1.149320e-01	ci left: 9.818038e-02	ci right 1.102513e-01	k: 1041	n:10000
UBR7   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.041000e-01   p_cons 7.140000e-01   p_joint 1.612000e-01

Joint ci ratio: 5.555804e-02	ci left: 1.937332e-01	ci right 2.048543e-01	k: 3985	n:20000
Cons ci ratio: 1.822985e-02	ci left: 6.916338e-01	ci right 7.044086e-01	k: 13961	n:20000
KS ci ratio: 8.056057e-02	ci left: 1.015697e-01	ci right 1.101452e-01	k: 2116	n:20000
UBR7   20000 perm   4 sec   (5363 perm/sec)   p_kst 1.058000e-01   p_cons 6.980500e-01   p_joint 1.992500e-01

Outputting figure to mutsig2_images.part000000000186/UBR7.3_1322_20000_0.1058_0.69805_0.19925.png
                gene_name: UBR7
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 64 percent done.
UBTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
Cons ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
KS ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
UBTF   10000 perm   2 sec   (5755 perm/sec)   p_kst 7.198000e-01   p_cons 1.032000e-01   p_joint 3.451000e-01

Joint ci ratio: 3.017530e-02	ci left: 4.506770e-01	ci right 4.645353e-01	k: 9152	n:20000
Cons ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
KS ci ratio: 1.721880e-02	ci left: 7.152810e-01	ci right 7.277546e-01	k: 14431	n:20000
UBTF   20000 perm   4 sec   (5132 perm/sec)   p_kst 7.215500e-01   p_cons 1.009500e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000186/UBTF.3_2375_20000_0.72155_0.10095_0.4576.png
                gene_name: UBTF
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 66 percent done.
UBXN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
Cons ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
KS ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
UBXN10   10000 perm   2 sec   (6358 perm/sec)   p_kst 9.341000e-01   p_cons 3.160000e-01   p_joint 7.475000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN10.3_847_10000_0.9341_0.316_0.7475.png
                gene_name: UBXN10
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 67 percent done.
UBXN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
KS ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
UBXN2B   10000 perm   2 sec   (6444 perm/sec)   p_kst 2.991000e-01   p_cons 9.795000e-01   p_joint 3.673000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN2B.3_1028_10000_0.2991_0.9795_0.3673.png
                gene_name: UBXN2B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 69 percent done.
UBXN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
KS ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
UBXN7   10000 perm   2 sec   (5948 perm/sec)   p_kst 9.426000e-01   p_cons 7.120000e-02   p_joint 5.213000e-01

Joint ci ratio: 3.106900e-02	ci left: 4.362491e-01	ci right 4.500674e-01	k: 8863	n:20000
Cons ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
KS ci ratio: 6.836077e-03	ci left: 9.393891e-01	ci right 9.458815e-01	k: 18854	n:20000
UBXN7   20000 perm   4 sec   (5285 perm/sec)   p_kst 9.427000e-01   p_cons 7.190000e-02   p_joint 4.431500e-01

Outputting figure to mutsig2_images.part000000000186/UBXN7.3_1514_20000_0.9427_0.0719_0.44315.png
                gene_name: UBXN7
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 71 percent done.
UGT1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
Cons ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
KS ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
UGT1A3   10000 perm   2 sec   (6211 perm/sec)   p_kst 1.612000e-01   p_cons 9.244000e-01   p_joint 3.510000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A3.3_1625_10000_0.1612_0.9244_0.351.png
                gene_name: UGT1A3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 72 percent done.
UGT1A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
UGT1A5   10000 perm   2 sec   (6058 perm/sec)   p_kst 1.752000e-01   p_cons 8.315000e-01   p_joint 2.728000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A5.3_1625_10000_0.1752_0.8315_0.2728.png
                gene_name: UGT1A5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 74 percent done.
UGT1A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
Cons ci ratio: 7.842084e-03	ci left: 9.576469e-01	ci right 9.652813e-01	k: 9616	n:10000
KS ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
UGT1A7   10000 perm   2 sec   (6241 perm/sec)   p_kst 5.460000e-02   p_cons 9.616000e-01   p_joint 1.672000e-01

Joint ci ratio: 5.240563e-02	ci left: 2.128388e-01	ci right 2.243431e-01	k: 4371	n:20000
Cons ci ratio: 5.351994e-03	ci left: 9.614283e-01	ci right 9.666357e-01	k: 19282	n:20000
KS ci ratio: 1.152823e-01	ci left: 5.149119e-02	ci right 5.783907e-02	k: 1092	n:20000
UGT1A7   20000 perm   4 sec   (5518 perm/sec)   p_kst 5.460000e-02   p_cons 9.641000e-01   p_joint 2.185500e-01

Joint ci ratio: 4.912799e-02	ci left: 1.707483e-01	ci right 1.793814e-01	k: 5251	n:30000
Cons ci ratio: 4.360604e-03	ci left: 9.620698e-01	ci right 9.663064e-01	k: 28927	n:30000
KS ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
UGT1A7   30000 perm   6 sec   (5234 perm/sec)   p_kst 5.470000e-02   p_cons 9.642333e-01   p_joint 1.750333e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A7.3_1613_30000_0.0547_0.96423_0.17503.png
                gene_name: UGT1A7
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 76 percent done.
UGT2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
KS ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
UGT2A1   10000 perm   2 sec   (6218 perm/sec)   p_kst 8.028000e-01   p_cons 4.558000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT2A1.3_1608_10000_0.8028_0.4558_1.png
                gene_name: UGT2A1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ULK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
Cons ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
KS ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
ULK1   10000 perm   2 sec   (5305 perm/sec)   p_kst 1.081000e-01   p_cons 8.938000e-01   p_joint 2.564000e-01

Joint ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
Cons ci ratio: 9.711135e-03	ci left: 8.862938e-01	ci right 8.949922e-01	k: 17814	n:20000
KS ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
ULK1   20000 perm   4 sec   (4741 perm/sec)   p_kst 1.055000e-01   p_cons 8.907000e-01   p_joint 2.037500e-01

Outputting figure to mutsig2_images.part000000000186/ULK1.3_3265_20000_0.1055_0.8907_0.20375.png
                gene_name: ULK1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
UBOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
Cons ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
KS ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
UBOX5   10000 perm   2 sec   (6650 perm/sec)   p_kst 8.381000e-01   p_cons 2.218000e-01   p_joint 5.268000e-01

Outputting figure to mutsig2_images.part000000000186/UBOX5.2_1642_10000_0.8381_0.2218_0.5268.png
                gene_name: UBOX5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 81 percent done.
UBQLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
Cons ci ratio: 5.494609e-02	ci left: 3.279327e-01	ci right 3.465622e-01	k: 3372	n:10000
KS ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
UBQLN4   10000 perm   2 sec   (6297 perm/sec)   p_kst 7.942000e-01   p_cons 3.372000e-01   p_joint 9.804000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN4.2_1850_10000_0.7942_0.3372_0.9804.png
                gene_name: UBQLN4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 83 percent done.
UBXN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
Cons ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
KS ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
UBXN11   10000 perm   2 sec   (6237 perm/sec)   p_kst 9.896000e-01   p_cons 5.970000e-01   p_joint 7.257000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN11.2_1619_10000_0.9896_0.597_0.7257.png
                gene_name: UBXN11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 84 percent done.
UBXN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
Cons ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
KS ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
UBXN2A   10000 perm   1 sec   (6887 perm/sec)   p_kst 4.972000e-01   p_cons 4.070000e-01   p_joint 9.829000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN2A.2_804_10000_0.4972_0.407_0.9829.png
                gene_name: UBXN2A
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
UCHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
Cons ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
KS ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
UCHL5   10000 perm   1 sec   (7007 perm/sec)   p_kst 3.687000e-01   p_cons 3.920000e-02   p_joint 3.250000e-02

Joint ci ratio: 2.672276e-02	ci left: 5.112979e-01	ci right 5.251968e-01	k: 10365	n:20000
Cons ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
KS ci ratio: 3.644650e-02	ci left: 3.597173e-01	ci right 3.731216e-01	k: 7328	n:20000
UCHL5   20000 perm   3 sec   (6128 perm/sec)   p_kst 3.664000e-01   p_cons 8.470000e-02   p_joint 5.182500e-01

Outputting figure to mutsig2_images.part000000000186/UCHL5.2_1034_20000_0.3664_0.0847_0.51825.png
                gene_name: UCHL5
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 88 percent done.
UCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
Cons ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
KS ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
UCK2   10000 perm   1 sec   (6892 perm/sec)   p_kst 1.600000e-01   p_cons 3.101000e-01   p_joint 2.032000e-01

Outputting figure to mutsig2_images.part000000000186/UCK2.2_814_10000_0.16_0.3101_0.2032.png
                gene_name: UCK2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 90 percent done.
UCMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
UCMA   10000 perm   1 sec   (6964 perm/sec)   p_kst 9.567000e-01   p_cons 1.293000e-01   p_joint 6.710000e-01

Joint ci ratio: 1.938214e-02	ci left: 6.650418e-01	ci right 6.781083e-01	k: 13432	n:20000
Cons ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
KS ci ratio: 5.770542e-03	ci left: 9.556435e-01	ci right 9.612223e-01	k: 19170	n:20000
UCMA   20000 perm   3 sec   (6089 perm/sec)   p_kst 9.585000e-01   p_cons 1.293000e-01   p_joint 6.716000e-01

Outputting figure to mutsig2_images.part000000000186/UCMA.2_437_20000_0.9585_0.1293_0.6716.png
                gene_name: UCMA
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 91 percent done.
UCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
Cons ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
KS ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
UCP1   10000 perm   1 sec   (6807 perm/sec)   p_kst 2.310000e-01   p_cons 5.643000e-01   p_joint 4.236000e-01

Outputting figure to mutsig2_images.part000000000186/UCP1.2_946_10000_0.231_0.5643_0.4236.png
                gene_name: UCP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 93 percent done.
UGT1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
UGT1A4   10000 perm   2 sec   (6324 perm/sec)   p_kst 3.042000e-01   p_cons 8.827000e-01   p_joint 6.964000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A4.2_1625_10000_0.3042_0.8827_0.6964.png
                gene_name: UGT1A4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 95 percent done.
UIMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
Cons ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
KS ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
UIMC1   10000 perm   2 sec   (6074 perm/sec)   p_kst 2.504000e-01   p_cons 7.653000e-01   p_joint 6.773000e-01

Outputting figure to mutsig2_images.part000000000186/UIMC1.2_2216_10000_0.2504_0.7653_0.6773.png
                gene_name: UIMC1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 97 percent done.
ULK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
Cons ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
KS ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
ULK2   10000 perm   2 sec   (5917 perm/sec)   p_kst 2.056000e-01   p_cons 4.806000e-01   p_joint 4.004000e-01

Outputting figure to mutsig2_images.part000000000186/ULK2.2_3219_10000_0.2056_0.4806_0.4004.png
                gene_name: ULK2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 98 percent done.
UMPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
UMPS   10000 perm   2 sec   (6443 perm/sec)   p_kst 9.792000e-01   p_cons 5.880000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
KS ci ratio: 3.969387e-03	ci left: 9.779111e-01	ci right 9.818476e-01	k: 19599	n:20000
UMPS   20000 perm   4 sec   (5621 perm/sec)   p_kst 9.799500e-01   p_cons 5.875000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.071046e-02	ci left: 5.593575e-02	ci right 6.128346e-02	k: 1757	n:30000
KS ci ratio: 3.273887e-03	ci left: 9.778672e-01	ci right 9.811056e-01	k: 29386	n:30000
UMPS   30000 perm   6 sec   (5341 perm/sec)   p_kst 9.795333e-01   p_cons 5.856667e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UMPS.2_1467_30000_0.97953_0.058567_1.png
                gene_name: UMPS
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000186
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 186 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 4422673: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000187> was used as the working directory.
Started at Wed Oct 24 18:10:34 2012
Results reported at Wed Oct 24 18:37:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000187.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000187.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 187  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000187.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1709.87 sec.
    Max Memory :      5413 MB
    Max Swap   :      7788 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
187
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 187
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 187: processing genes 16828 - 16918
Calculating significance of each gene.
Using projection method.
16828	UNC119B	1
16829	UNC13A	1
16830	UNC13B	8.939726e-01
16831	UNC13C	9.694853e-01
16832	UNC13D	9.068539e-01
16833	UNC45A	9.908855e-01
16834	UNC45B	9.891694e-01
16835	UNC50	7.924090e-01
16836	UNC5A	7.950517e-01
16837	UNC5B	9.461787e-01
16838	UNC5C	9.453445e-01
16839	UNC5CL	8.406233e-01
16840	UNC5D	9.287828e-02
16841	UNC93A	4.279329e-02
16842	UNC93B1	1
16843	UNCX	1.176499e-01
16844	UNG	7.300470e-02
16845	UNK	6.238793e-01
16846	UNKL	1
16847	UPB1	1
16848	UPF1	9.744331e-01
16849	UPF2	9.426395e-01
16850	UPF3A	8.657883e-01
16851	UPF3B	1.985399e-01
16852	UPK1A	1
16853	UPK1B	2.752525e-01
16854	UPK2	1
16855	UPK3A	1
16856	UPK3B	8.580238e-01
16857	UPP1	9.367085e-02
16858	UPP2	1.444907e-02
16859	UPRT	9.898708e-02
16860	UQCC	1.331785e-01
16861	UQCR10	1
16862	UQCR11	3.960152e-02
16863	UQCRB	4.629043e-03
16864	UQCRC1	1
16865	UQCRC2	5.340559e-01
16866	UQCRFS1	3.691239e-01
16867	UQCRH	1
16868	UQCRHL	1
16869	UQCRQ	3.352681e-01
In gene URB2 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 4611    n = 1	mu =   3.68e-07
16870	URB2	9.853606e-01
16871	URGCP	4.545043e-01
16872	URM1	1
16873	UROC1	1.930094e-01
16874	UROD	1
16875	UROS	1
16876	USE1	1
16877	USF1	9.066177e-01
16878	USF2	6.265990e-02
16879	USH1C	9.360370e-01
16880	USH1G	7.051748e-01
16881	USH2A	1
16882	USHBP1	3.222207e-01
16883	USMG5	1
16884	USO1	5.997827e-01
16885	USP1	1.859970e-01
16886	USP10	8.640335e-01
16887	USP11	7.923363e-01
16888	USP12	6.418654e-01
16889	USP13	4.873065e-01
16890	USP14	5.817679e-01
16891	USP15	2.873875e-01
16892	USP16	1
16893	USP17L2	4.433902e-01
16894	USP18	8.540055e-01
16895	USP19	9.781765e-01
16896	USP2	9.884305e-01
16897	USP20	1
16898	USP21	1
16899	USP22	6.060666e-01
16900	USP24	9.981157e-01
16901	USP25	5.943027e-01
16902	USP26	1.072606e-01
16903	USP28	9.430109e-01
16904	USP29	3.078099e-01
16905	USP3	8.412430e-01
16906	USP30	7.284559e-01
16907	USP31	1
16908	USP32	9.997563e-01
16909	USP33	3.781267e-02
16910	USP34	9.999998e-01
16911	USP35	1
16912	USP36	9.963423e-01
16913	USP37	9.913493e-01
16914	USP38	8.752565e-01
16915	USP39	2.140907e-01
16916	USP4	9.171483e-01
16917	USP40	1
16918	USP42	9.938818e-01
Done

Running MutSig 2:
Scatter job 187: processing genes 16828 - 16918
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
USH2A
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
USH2A   10000 perm   12 sec   (805 perm/sec)   p_kst 5.500000e-03   p_cons 8.483000e-01   p_joint 3.780000e-02

Joint ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
Cons ci ratio: 1.166540e-02	ci left: 8.445195e-01	ci right 8.544787e-01	k: 16991	n:20000
KS ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
USH2A   20000 perm   33 sec   (614 perm/sec)   p_kst 6.450000e-03   p_cons 8.495500e-01   p_joint 3.395000e-02

Joint ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
Cons ci ratio: 9.632969e-03	ci left: 8.425056e-01	ci right 8.506939e-01	k: 25399	n:30000
KS ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
USH2A   30000 perm   44 sec   (677 perm/sec)   p_kst 6.200000e-03   p_cons 8.466333e-01   p_joint 1.896667e-02

Joint ci ratio: 1.168828e-01	ci left: 2.574923e-02	ci right 2.896987e-02	k: 1093	n:40000
Cons ci ratio: 8.336961e-03	ci left: 8.432326e-01	ci right 8.503169e-01	k: 33872	n:40000
KS ci ratio: 2.623588e-01	ci left: 4.822176e-03	ci right 6.300997e-03	k: 221	n:40000
USH2A   40000 perm   56 sec   (716 perm/sec)   p_kst 5.525000e-03   p_cons 8.468000e-01   p_joint 2.732500e-02

Joint ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
Cons ci ratio: 7.446413e-03	ci left: 8.439758e-01	ci right 8.503038e-01	k: 42358	n:50000
KS ci ratio: 2.374745e-01	ci left: 4.776484e-03	ci right 6.081948e-03	k: 270	n:50000
USH2A   50000 perm   68 sec   (739 perm/sec)   p_kst 5.400000e-03   p_cons 8.471600e-01   p_joint 2.206000e-02

Joint ci ratio: 9.785240e-02	ci left: 2.477385e-02	ci right 2.733894e-02	k: 1562	n:60000
Cons ci ratio: 6.828881e-03	ci left: 8.430532e-01	ci right 8.488466e-01	k: 50758	n:60000
KS ci ratio: 2.168510e-01	ci left: 4.829295e-03	ci right 6.019314e-03	k: 324	n:60000
USH2A   60000 perm   79 sec   (755 perm/sec)   p_kst 5.400000e-03   p_cons 8.459667e-01   p_joint 2.603333e-02

Joint ci ratio: 1.067480e-01	ci left: 1.789017e-02	ci right 1.992142e-02	k: 1322	n:70000
Cons ci ratio: 6.311783e-03	ci left: 8.437075e-01	ci right 8.490638e-01	k: 59248	n:70000
KS ci ratio: 2.000152e-01	ci left: 4.911258e-03	ci right 6.016058e-03	k: 381	n:70000
USH2A   70000 perm   91 sec   (766 perm/sec)   p_kst 5.442857e-03   p_cons 8.464000e-01   p_joint 1.888571e-02

Joint ci ratio: 1.010873e-01	ci left: 1.751654e-02	ci right 1.939362e-02	k: 1475	n:80000
Cons ci ratio: 5.875143e-03	ci left: 8.451661e-01	ci right 8.501586e-01	k: 67814	n:80000
KS ci ratio: 1.898657e-01	ci left: 4.796712e-03	ci right 5.814670e-03	k: 423	n:80000
USH2A   80000 perm   103 sec   (774 perm/sec)   p_kst 5.287500e-03   p_cons 8.476750e-01   p_joint 1.843750e-02

Joint ci ratio: 9.454036e-02	ci left: 1.785753e-02	ci right 1.964035e-02	k: 1686	n:90000
Cons ci ratio: 5.538593e-03	ci left: 8.453358e-01	ci right 8.500418e-01	k: 76293	n:90000
KS ci ratio: 1.803424e-01	ci left: 4.751172e-03	ci right 5.703369e-03	k: 469	n:90000
USH2A   90000 perm   116 sec   (779 perm/sec)   p_kst 5.211111e-03   p_cons 8.477000e-01   p_joint 1.873333e-02

Joint ci ratio: 9.181958e-02	ci left: 1.707746e-02	ci right 1.873068e-02	k: 1789	n:100000
Cons ci ratio: 4.598668e-03	ci left: 8.769929e-01	ci right 8.810451e-01	k: 87903	n:100000
KS ci ratio: 1.714550e-01	ci left: 4.754051e-03	ci right 5.655015e-03	k: 519	n:100000
USH2A   100000 perm   128 sec   (783 perm/sec)   p_kst 5.190000e-03   p_cons 8.790300e-01   p_joint 1.789000e-02

Joint ci ratio: 9.012069e-02	ci left: 1.614649e-02	ci right 1.767913e-02	k: 1859	n:110000
Cons ci ratio: 4.386205e-03	ci left: 8.770124e-01	ci right 8.808766e-01	k: 96685	n:110000
KS ci ratio: 1.633325e-01	ci left: 4.783512e-03	ci right 5.642894e-03	k: 572	n:110000
USH2A   110000 perm   140 sec   (784 perm/sec)   p_kst 5.200000e-03   p_cons 8.789545e-01   p_joint 1.690000e-02

Joint ci ratio: 9.531182e-02	ci left: 1.323706e-02	ci right 1.456992e-02	k: 1667	n:120000
Cons ci ratio: 4.193303e-03	ci left: 8.774099e-01	ci right 8.811051e-01	k: 105512	n:120000
KS ci ratio: 1.557654e-01	ci left: 4.840939e-03	ci right 5.666582e-03	k: 629	n:120000
USH2A   120000 perm   153 sec   (785 perm/sec)   p_kst 5.241667e-03   p_cons 8.792667e-01   p_joint 1.389167e-02

Joint ci ratio: 9.248522e-02	ci left: 1.299996e-02	ci right 1.426803e-02	k: 1771	n:130000
Cons ci ratio: 4.028011e-03	ci left: 8.775245e-01	ci right 8.810739e-01	k: 114310	n:130000
KS ci ratio: 1.482955e-01	ci left: 4.949566e-03	ci right 5.749665e-03	k: 694	n:130000
USH2A   130000 perm   166 sec   (785 perm/sec)   p_kst 5.338462e-03   p_cons 8.793077e-01   p_joint 1.362308e-02

Joint ci ratio: 8.314582e-02	ci left: 1.497833e-02	ci right 1.628470e-02	k: 2187	n:140000
Cons ci ratio: 3.876921e-03	ci left: 8.778408e-01	ci right 8.812578e-01	k: 123138	n:140000
KS ci ratio: 1.437202e-01	ci left: 4.905705e-03	ci right 5.672147e-03	k: 739	n:140000
USH2A   140000 perm   178 sec   (785 perm/sec)   p_kst 5.278571e-03   p_cons 8.795571e-01   p_joint 1.562143e-02

Joint ci ratio: 7.687271e-02	ci left: 1.638453e-02	ci right 1.770090e-02	k: 2555	n:150000
Cons ci ratio: 3.741518e-03	ci left: 8.781235e-01	ci right 8.814218e-01	k: 131967	n:150000
KS ci ratio: 1.390991e-01	ci left: 4.900198e-03	ci right 5.639123e-03	k: 789	n:150000
USH2A   150000 perm   191 sec   (785 perm/sec)   p_kst 5.260000e-03   p_cons 8.797800e-01   p_joint 1.703333e-02

Joint ci ratio: 7.545746e-02	ci left: 1.596120e-02	ci right 1.721891e-02	k: 2653	n:160000
Cons ci ratio: 4.033267e-03	ci left: 8.534222e-01	ci right 8.568774e-01	k: 136825	n:160000
KS ci ratio: 1.336235e-01	ci left: 4.992383e-03	ci right 5.713220e-03	k: 855	n:160000
USH2A   160000 perm   204 sec   (785 perm/sec)   p_kst 5.343750e-03   p_cons 8.551562e-01   p_joint 1.658125e-02

Joint ci ratio: 8.573752e-02	ci left: 1.162597e-02	ci right 1.267312e-02	k: 2064	n:170000
Cons ci ratio: 3.574050e-03	ci left: 8.746073e-01	ci right 8.777446e-01	k: 148951	n:170000
KS ci ratio: 1.298134e-01	ci left: 4.988827e-03	ci right 5.687029e-03	k: 906	n:170000
USH2A   170000 perm   217 sec   (784 perm/sec)   p_kst 5.329412e-03   p_cons 8.761824e-01   p_joint 1.214118e-02

Joint ci ratio: 8.071730e-02	ci left: 1.241100e-02	ci right 1.346033e-02	k: 2327	n:180000
Cons ci ratio: 3.469598e-03	ci left: 8.748875e-01	ci right 8.779337e-01	k: 157755	n:180000
KS ci ratio: 1.259158e-01	ci left: 5.018214e-03	ci right 5.697867e-03	k: 963	n:180000
USH2A   180000 perm   230 sec   (783 perm/sec)   p_kst 5.350000e-03   p_cons 8.764167e-01   p_joint 1.292778e-02

Joint ci ratio: 7.818391e-02	ci left: 1.254709e-02	ci right 1.357311e-02	k: 2480	n:190000
Cons ci ratio: 3.375348e-03	ci left: 8.750387e-01	ci right 8.780024e-01	k: 166540	n:190000
KS ci ratio: 1.222893e-01	ci left: 5.049889e-03	ci right 5.712708e-03	k: 1021	n:190000
USH2A   190000 perm   243 sec   (781 perm/sec)   p_kst 5.373684e-03   p_cons 8.765263e-01   p_joint 1.305263e-02

Joint ci ratio: 7.471919e-02	ci left: 1.306750e-02	ci right 1.408667e-02	k: 2714	n:200000
Cons ci ratio: 3.290432e-03	ci left: 8.750401e-01	ci right 8.779290e-01	k: 175298	n:200000
KS ci ratio: 1.194605e-01	ci left: 5.034985e-03	ci right 5.679480e-03	k: 1070	n:200000
USH2A   200000 perm   256 sec   (781 perm/sec)   p_kst 5.350000e-03   p_cons 8.764900e-01   p_joint 1.357000e-02

Joint ci ratio: 7.184966e-02	ci left: 1.347376e-02	ci right 1.448257e-02	k: 2934	n:210000
Cons ci ratio: 3.205967e-03	ci left: 8.754250e-01	ci right 8.782408e-01	k: 184136	n:210000
KS ci ratio: 1.164021e-01	ci left: 5.058649e-03	ci right 5.688456e-03	k: 1127	n:210000
USH2A   210000 perm   269 sec   (780 perm/sec)   p_kst 5.366667e-03   p_cons 8.768381e-01   p_joint 1.397143e-02

Joint ci ratio: 7.141793e-02	ci left: 1.302638e-02	ci right 1.399559e-02	k: 2971	n:220000
Cons ci ratio: 3.132742e-03	ci left: 8.754239e-01	ci right 8.781752e-01	k: 192897	n:220000
KS ci ratio: 1.110061e-01	ci left: 5.323368e-03	ci right 5.953401e-03	k: 1239	n:220000
USH2A   220000 perm   283 sec   (779 perm/sec)   p_kst 5.631818e-03   p_cons 8.768045e-01   p_joint 1.350455e-02

Joint ci ratio: 6.902066e-02	ci left: 1.335284e-02	ci right 1.431165e-02	k: 3180	n:230000
Cons ci ratio: 3.063390e-03	ci left: 8.754892e-01	ci right 8.781796e-01	k: 201673	n:230000
KS ci ratio: 1.087927e-01	ci left: 5.307559e-03	ci right 5.922392e-03	k: 1290	n:230000
USH2A   230000 perm   296 sec   (777 perm/sec)   p_kst 5.608696e-03   p_cons 8.768391e-01   p_joint 1.382609e-02

Joint ci ratio: 6.597619e-02	ci left: 1.401734e-02	ci right 1.497777e-02	k: 3478	n:240000
Cons ci ratio: 2.998507e-03	ci left: 8.755454e-01	ci right 8.781788e-01	k: 210448	n:240000
KS ci ratio: 1.061906e-01	ci left: 5.345914e-03	ci right 5.949453e-03	k: 1354	n:240000
USH2A   240000 perm   310 sec   (775 perm/sec)   p_kst 5.641667e-03   p_cons 8.768667e-01   p_joint 1.449167e-02

Joint ci ratio: 6.414180e-02	ci left: 1.424762e-02	ci right 1.519568e-02	k: 3679	n:250000
Cons ci ratio: 2.938940e-03	ci left: 8.754972e-01	ci right 8.780780e-01	k: 219198	n:250000
KS ci ratio: 1.038403e-01	ci left: 5.373567e-03	ci right 5.965981e-03	k: 1416	n:250000
USH2A   250000 perm   323 sec   (773 perm/sec)   p_kst 5.664000e-03   p_cons 8.767920e-01   p_joint 1.471600e-02

Joint ci ratio: 6.421335e-02	ci left: 1.367680e-02	ci right 1.458793e-02	k: 3673	n:260000
Cons ci ratio: 2.878630e-03	ci left: 8.757662e-01	ci right 8.782946e-01	k: 228029	n:260000
KS ci ratio: 1.019868e-01	ci left: 5.361742e-03	ci right 5.941669e-03	k: 1468	n:260000
USH2A   260000 perm   337 sec   (771 perm/sec)   p_kst 5.646154e-03   p_cons 8.770346e-01   p_joint 1.412692e-02

Joint ci ratio: 6.483235e-02	ci left: 1.292594e-02	ci right 1.379566e-02	k: 3606	n:270000
Cons ci ratio: 2.826775e-03	ci left: 8.756399e-01	ci right 8.781223e-01	k: 236759	n:270000
KS ci ratio: 9.999798e-02	ci left: 5.376160e-03	ci right 5.945641e-03	k: 1527	n:270000
USH2A   270000 perm   351 sec   (769 perm/sec)   p_kst 5.655556e-03   p_cons 8.768852e-01   p_joint 1.335556e-02

Outputting figure to mutsig2_images.part000000000187/USH2A.116_15907_270000_0.0056556_0.87689_0.013356.png
                gene_name: USH2A
               theta_stop: 0.100 
                    nperm: 270000 
                     p_ks: 0.0057 
        ci_ks_bounds_left: 0.0054 
       ci_ks_bounds_right: 0.0059 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 1 percent done.
UNC13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
Cons ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
KS ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
UNC13C   10000 perm   3 sec   (2873 perm/sec)   p_kst 7.439000e-01   p_cons 6.259000e-01   p_joint 9.268000e-01

Outputting figure to mutsig2_images.part000000000187/UNC13C.27_6769_10000_0.7439_0.6259_0.9268.png
                gene_name: UNC13C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 3 percent done.
URB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
Cons ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
URB2   10000 perm   3 sec   (3341 perm/sec)   p_kst 1.323000e-01   p_cons 6.259000e-01   p_joint 3.298000e-01

Joint ci ratio: 4.780563e-02	ci left: 2.455480e-01	ci right 2.576243e-01	k: 5031	n:20000
Cons ci ratio: 2.168088e-02	ci left: 6.136323e-01	ci right 6.271327e-01	k: 12408	n:20000
KS ci ratio: 7.014744e-02	ci left: 1.302923e-01	ci right 1.398140e-01	k: 2700	n:20000
URB2   20000 perm   7 sec   (3072 perm/sec)   p_kst 1.350000e-01   p_cons 6.204000e-01   p_joint 2.515500e-01

Outputting figure to mutsig2_images.part000000000187/URB2.18_4611_20000_0.135_0.6204_0.25155.png
                gene_name: URB2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
UNC5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
Cons ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
KS ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
UNC5D   10000 perm   2 sec   (4333 perm/sec)   p_kst 3.100000e-01   p_cons 7.764000e-01   p_joint 5.063000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5D.17_2930_10000_0.31_0.7764_0.5063.png
                gene_name: UNC5D
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 6 percent done.
USP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
Cons ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
KS ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
USP29   10000 perm   2 sec   (4163 perm/sec)   p_kst 2.802000e-01   p_cons 9.465000e-01   p_joint 4.710000e-01

Outputting figure to mutsig2_images.part000000000187/USP29.17_2773_10000_0.2802_0.9465_0.471.png
                gene_name: USP29
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 7 percent done.
USP34
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
USP34   10000 perm   4 sec   (2397 perm/sec)   p_kst 3.953000e-01   p_cons 9.476000e-01   p_joint 6.974000e-01

Outputting figure to mutsig2_images.part000000000187/USP34.14_10961_10000_0.3953_0.9476_0.6974.png
                gene_name: USP34
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 9 percent done.
UNC5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
UNC5C   10000 perm   2 sec   (4060 perm/sec)   p_kst 9.698000e-01   p_cons 4.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC5C.11_2860_10000_0.9698_0.4542_1.png
                gene_name: UNC5C
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
UNC45B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
UNC45B   10000 perm   2 sec   (4173 perm/sec)   p_kst 7.104000e-01   p_cons 5.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC45B.10_2872_10000_0.7104_0.5111_1.png
                gene_name: UNC45B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
USP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
KS ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
USP28   10000 perm   2 sec   (4285 perm/sec)   p_kst 2.351000e-01   p_cons 1.031000e-01   p_joint 1.378000e-01

Joint ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
Cons ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
KS ci ratio: 4.976171e-02	ci left: 2.308723e-01	ci right 2.427043e-01	k: 4735	n:20000
USP28   20000 perm   5 sec   (3887 perm/sec)   p_kst 2.367500e-01   p_cons 1.048000e-01   p_joint 1.168500e-01

Outputting figure to mutsig2_images.part000000000187/USP28.10_3334_20000_0.23675_0.1048_0.11685.png
                gene_name: USP28
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
UROC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
Cons ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
KS ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
UROC1   10000 perm   2 sec   (4741 perm/sec)   p_kst 3.739000e-01   p_cons 3.173000e-01   p_joint 3.451000e-01

Outputting figure to mutsig2_images.part000000000187/UROC1.9_2295_10000_0.3739_0.3173_0.3451.png
                gene_name: UROC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 15 percent done.
USP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
USP1   10000 perm   2 sec   (4647 perm/sec)   p_kst 1.572000e-01   p_cons 2.885000e-01   p_joint 3.069000e-01

Outputting figure to mutsig2_images.part000000000187/USP1.9_2390_10000_0.1572_0.2885_0.3069.png
                gene_name: USP1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 16 percent done.
USP26
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
KS ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
USP26   10000 perm   2 sec   (4578 perm/sec)   p_kst 7.458000e-01   p_cons 9.244000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP26.8_2745_10000_0.7458_0.9244_1.png
                gene_name: USP26
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
USP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545961e-02	ci left: 6.942385e-01	ci right 7.122429e-01	k: 7033	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
USP33   10000 perm   2 sec   (4303 perm/sec)   p_kst 8.637000e-01   p_cons 2.990000e-01   p_joint 7.033000e-01

Outputting figure to mutsig2_images.part000000000187/USP33.9_2937_10000_0.8637_0.299_0.7033.png
                gene_name: USP33
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 19 percent done.
UNC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
Cons ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
KS ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
UNC5B   10000 perm   2 sec   (4068 perm/sec)   p_kst 2.862000e-01   p_cons 6.069000e-01   p_joint 4.613000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5B.8_2906_10000_0.2862_0.6069_0.4613.png
                gene_name: UNC5B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 21 percent done.
UNC93A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
Cons ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
KS ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
UNC93A   10000 perm   2 sec   (5035 perm/sec)   p_kst 7.531000e-01   p_cons 6.782000e-01   p_joint 8.929000e-01

Outputting figure to mutsig2_images.part000000000187/UNC93A.8_1406_10000_0.7531_0.6782_0.8929.png
                gene_name: UNC93A
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 22 percent done.
UPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
UPP2   10000 perm   2 sec   (5274 perm/sec)   p_kst 1.868000e-01   p_cons 9.480000e-01   p_joint 3.346000e-01

Outputting figure to mutsig2_images.part000000000187/UPP2.8_1161_10000_0.1868_0.948_0.3346.png
                gene_name: UPP2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 24 percent done.
UNC13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
UNC13A   10000 perm   3 sec   (3766 perm/sec)   p_kst 3.373000e-01   p_cons 5.500000e-03   p_joint 1.190000e-02

Joint ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
Cons ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
KS ci ratio: 3.920735e-02	ci left: 3.266671e-01	ci right 3.397814e-01	k: 6664	n:20000
UNC13A   20000 perm   6 sec   (3439 perm/sec)   p_kst 3.332000e-01   p_cons 5.900000e-03   p_joint 3.455000e-02

Joint ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
Cons ci ratio: 2.812540e-01	ci left: 5.529030e-03	ci right 7.368516e-03	k: 192	n:30000
KS ci ratio: 3.080857e-02	ci left: 3.450657e-01	ci right 3.558966e-01	k: 10514	n:30000
UNC13A   30000 perm   9 sec   (3321 perm/sec)   p_kst 3.504667e-01   p_cons 6.400000e-03   p_joint 3.623333e-02

Joint ci ratio: 1.223378e-01	ci left: 2.349206e-02	ci right 2.657742e-02	k: 1000	n:40000
Cons ci ratio: 2.432572e-01	ci left: 5.665515e-03	ci right 7.257410e-03	k: 257	n:40000
KS ci ratio: 2.679566e-02	ci left: 3.438540e-01	ci right 3.532180e-01	k: 13941	n:40000
UNC13A   40000 perm   12 sec   (3242 perm/sec)   p_kst 3.485250e-01   p_cons 6.425000e-03   p_joint 2.500000e-02

Joint ci ratio: 1.028732e-01	ci left: 2.676641e-02	ci right 2.968870e-02	k: 1410	n:50000
Cons ci ratio: 2.115527e-01	ci left: 6.098414e-03	ci right 7.559726e-03	k: 340	n:50000
KS ci ratio: 2.398842e-02	ci left: 3.439434e-01	ci right 3.523143e-01	k: 17406	n:50000
UNC13A   50000 perm   16 sec   (3174 perm/sec)   p_kst 3.481200e-01   p_cons 6.800000e-03   p_joint 2.820000e-02

Joint ci ratio: 9.708973e-02	ci left: 2.516434e-02	ci right 2.774841e-02	k: 1586	n:60000
Cons ci ratio: 1.901488e-01	ci left: 6.364370e-03	ci right 7.717305e-03	k: 421	n:60000
KS ci ratio: 2.195586e-02	ci left: 3.431238e-01	ci right 3.507577e-01	k: 20816	n:60000
UNC13A   60000 perm   19 sec   (3116 perm/sec)   p_kst 3.469333e-01   p_cons 7.016667e-03   p_joint 2.643333e-02

Joint ci ratio: 9.724672e-02	ci left: 2.158140e-02	ci right 2.380127e-02	k: 1587	n:70000
Cons ci ratio: 1.743285e-01	ci left: 6.546031e-03	ci right 7.809624e-03	k: 501	n:70000
KS ci ratio: 2.033134e-02	ci left: 3.433162e-01	ci right 3.503822e-01	k: 24279	n:70000
UNC13A   70000 perm   23 sec   (3064 perm/sec)   p_kst 3.468429e-01   p_cons 7.157143e-03   p_joint 2.267143e-02

Joint ci ratio: 8.280487e-02	ci left: 2.612047e-02	ci right 2.838899e-02	k: 2179	n:80000
Cons ci ratio: 1.534857e-01	ci left: 7.466467e-03	ci right 8.719600e-03	k: 646	n:80000
KS ci ratio: 1.905742e-02	ci left: 3.426158e-01	ci right 3.492204e-01	k: 27673	n:80000
UNC13A   80000 perm   27 sec   (3015 perm/sec)   p_kst 3.459125e-01   p_cons 8.075000e-03   p_joint 2.723750e-02

Joint ci ratio: 7.144453e-02	ci left: 3.120909e-02	ci right 3.353229e-02	k: 2912	n:90000
Cons ci ratio: 1.430213e-01	ci left: 7.685456e-03	ci right 8.879897e-03	k: 744	n:90000
KS ci ratio: 1.795924e-02	ci left: 3.430136e-01	ci right 3.492408e-01	k: 31151	n:90000
UNC13A   90000 perm   30 sec   (2970 perm/sec)   p_kst 3.461222e-01   p_cons 8.266667e-03   p_joint 3.235556e-02

Joint ci ratio: 7.411896e-02	ci left: 2.620054e-02	ci right 2.822701e-02	k: 2720	n:100000
Cons ci ratio: 1.344410e-01	ci left: 7.862966e-03	ci right 9.005821e-03	k: 842	n:100000
KS ci ratio: 1.701932e-02	ci left: 3.436599e-01	ci right 3.495690e-01	k: 34661	n:100000
UNC13A   100000 perm   34 sec   (2931 perm/sec)   p_kst 3.466100e-01   p_cons 8.420000e-03   p_joint 2.720000e-02

Joint ci ratio: 6.998877e-02	ci left: 2.675597e-02	ci right 2.870540e-02	k: 3049	n:110000
Cons ci ratio: 1.284853e-01	ci left: 7.851509e-03	ci right 8.938287e-03	k: 922	n:110000
KS ci ratio: 1.623061e-02	ci left: 3.437056e-01	ci right 3.493388e-01	k: 38117	n:110000
UNC13A   110000 perm   38 sec   (2892 perm/sec)   p_kst 3.465182e-01   p_cons 8.381818e-03   p_joint 2.771818e-02

Joint ci ratio: 6.866419e-02	ci left: 2.553298e-02	ci right 2.735667e-02	k: 3172	n:120000
Cons ci ratio: 1.220960e-01	ci left: 7.996405e-03	ci right 9.044221e-03	k: 1021	n:120000
KS ci ratio: 1.553484e-02	ci left: 3.439653e-01	ci right 3.493588e-01	k: 41599	n:120000
UNC13A   120000 perm   42 sec   (2854 perm/sec)   p_kst 3.466583e-01   p_cons 8.508333e-03   p_joint 2.643333e-02

Joint ci ratio: 6.303982e-02	ci left: 2.797329e-02	ci right 2.980165e-02	k: 3754	n:130000
Cons ci ratio: 1.176370e-01	ci left: 7.970765e-03	ci right 8.974422e-03	k: 1100	n:130000
KS ci ratio: 1.493165e-02	ci left: 3.438822e-01	ci right 3.490632e-01	k: 45041	n:130000
UNC13A   130000 perm   46 sec   (2816 perm/sec)   p_kst 3.464692e-01   p_cons 8.461538e-03   p_joint 2.887692e-02

Joint ci ratio: 6.252739e-02	ci left: 2.645263e-02	ci right 2.816702e-02	k: 3822	n:140000
Cons ci ratio: 1.131987e-01	ci left: 8.011862e-03	ci right 8.980089e-03	k: 1188	n:140000
KS ci ratio: 1.438504e-02	ci left: 3.440854e-01	ci right 3.490781e-01	k: 48521	n:140000
UNC13A   140000 perm   50 sec   (2775 perm/sec)   p_kst 3.465786e-01   p_cons 8.485714e-03   p_joint 2.730000e-02

Joint ci ratio: 6.188352e-02	ci left: 2.524648e-02	ci right 2.686524e-02	k: 3907	n:150000
Cons ci ratio: 1.087562e-01	ci left: 8.119445e-03	ci right 9.059698e-03	k: 1287	n:150000
KS ci ratio: 1.387783e-02	ci left: 3.448037e-01	ci right 3.496289e-01	k: 52082	n:150000
UNC13A   150000 perm   55 sec   (2741 perm/sec)   p_kst 3.472133e-01   p_cons 8.580000e-03   p_joint 2.604667e-02

Joint ci ratio: 5.697932e-02	ci left: 2.791198e-02	ci right 2.955516e-02	k: 4596	n:160000
Cons ci ratio: 1.053750e-01	ci left: 8.122922e-03	ci right 9.032520e-03	k: 1371	n:160000
KS ci ratio: 1.343978e-02	ci left: 3.447920e-01	ci right 3.494635e-01	k: 55540	n:160000
UNC13A   160000 perm   59 sec   (2710 perm/sec)   p_kst 3.471250e-01   p_cons 8.568750e-03   p_joint 2.872500e-02

Joint ci ratio: 5.573387e-02	ci left: 2.748781e-02	ci right 2.906951e-02	k: 4806	n:170000
Cons ci ratio: 1.023617e-01	ci left: 8.114924e-03	ci right 8.996077e-03	k: 1453	n:170000
KS ci ratio: 1.304482e-02	ci left: 3.446429e-01	ci right 3.491741e-01	k: 58974	n:170000
UNC13A   170000 perm   64 sec   (2673 perm/sec)   p_kst 3.469059e-01   p_cons 8.547059e-03   p_joint 2.827059e-02

Joint ci ratio: 5.436045e-02	ci left: 2.731398e-02	ci right 2.884572e-02	k: 5053	n:180000
Cons ci ratio: 9.923512e-02	ci left: 8.167748e-03	ci right 9.025969e-03	k: 1546	n:180000
KS ci ratio: 1.266721e-02	ci left: 3.450669e-01	ci right 3.494713e-01	k: 62508	n:180000
UNC13A   180000 perm   68 sec   (2639 perm/sec)   p_kst 3.472667e-01   p_cons 8.588889e-03   p_joint 2.807222e-02

Outputting figure to mutsig2_images.part000000000187/UNC13A.7_5280_180000_0.34727_0.0085889_0.028072.png
                gene_name: UNC13A
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.0086 
      ci_cons_bounds_left: 0.0082 
     ci_cons_bounds_right: 0.0090 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 25 percent done.
UNC13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
Cons ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
KS ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
UNC13B   10000 perm   3 sec   (3916 perm/sec)   p_kst 2.315000e-01   p_cons 3.293000e-01   p_joint 3.030000e-01

Outputting figure to mutsig2_images.part000000000187/UNC13B.7_4932_10000_0.2315_0.3293_0.303.png
                gene_name: UNC13B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
URGCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
Cons ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
KS ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
URGCP   10000 perm   2 sec   (4678 perm/sec)   p_kst 7.370000e-01   p_cons 9.720000e-02   p_joint 6.427000e-01

Joint ci ratio: 3.784481e-02	ci left: 3.424909e-01	ci right 3.557530e-01	k: 6982	n:20000
Cons ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
KS ci ratio: 1.666911e-02	ci left: 7.282203e-01	ci right 7.405115e-01	k: 14688	n:20000
URGCP   20000 perm   5 sec   (4164 perm/sec)   p_kst 7.344000e-01   p_cons 9.205000e-02   p_joint 3.491000e-01

Outputting figure to mutsig2_images.part000000000187/URGCP.7_2820_20000_0.7344_0.09205_0.3491.png
                gene_name: URGCP
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 28 percent done.
USP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
Cons ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
KS ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
USP15   10000 perm   2 sec   (4322 perm/sec)   p_kst 3.306000e-01   p_cons 4.825000e-01   p_joint 4.432000e-01

Outputting figure to mutsig2_images.part000000000187/USP15.7_2943_10000_0.3306_0.4825_0.4432.png
                gene_name: USP15
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 30 percent done.
USP24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
KS ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
USP24   10000 perm   3 sec   (3110 perm/sec)   p_kst 4.487000e-01   p_cons 1.346000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000187/USP24.7_8135_10000_0.4487_0.1346_0.4522.png
                gene_name: USP24
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 31 percent done.
USP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
USP32   10000 perm   2 sec   (4078 perm/sec)   p_kst 6.469000e-01   p_cons 6.864000e-01   p_joint 8.045000e-01

Outputting figure to mutsig2_images.part000000000187/USP32.7_4951_10000_0.6469_0.6864_0.8045.png
                gene_name: USP32
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 33 percent done.
UPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
UPF2   10000 perm   2 sec   (4239 perm/sec)   p_kst 1.812000e-01   p_cons 9.049000e-01   p_joint 3.229000e-01

Outputting figure to mutsig2_images.part000000000187/UPF2.6_3903_10000_0.1812_0.9049_0.3229.png
                gene_name: UPF2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 34 percent done.
UPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
Cons ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
UPP1   10000 perm   2 sec   (5653 perm/sec)   p_kst 1.200000e-02   p_cons 1.106000e-01   p_joint 2.760000e-02

Joint ci ratio: 2.410476e-01	ci left: 1.147624e-02	ci right 1.466766e-02	k: 260	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 2.515060e-01	ci left: 1.049034e-02	ci right 1.355399e-02	k: 239	n:20000
UPP1   20000 perm   4 sec   (5040 perm/sec)   p_kst 1.195000e-02   p_cons 1.088000e-01   p_joint 1.300000e-02

Joint ci ratio: 1.573553e-01	ci left: 1.867001e-02	ci right 2.189050e-02	k: 607	n:30000
Cons ci ratio: 6.415697e-02	ci left: 1.071050e-01	ci right 1.142373e-01	k: 3319	n:30000
KS ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
UPP1   30000 perm   6 sec   (4623 perm/sec)   p_kst 1.120000e-02   p_cons 1.106333e-01   p_joint 2.023333e-02

Joint ci ratio: 1.157456e-01	ci left: 2.625936e-02	ci right 2.950967e-02	k: 1114	n:40000
Cons ci ratio: 5.552414e-02	ci left: 1.077151e-01	ci right 1.138915e-01	k: 4431	n:40000
KS ci ratio: 1.852084e-01	ci left: 1.004868e-02	ci right 1.212322e-02	k: 442	n:40000
UPP1   40000 perm   9 sec   (4506 perm/sec)   p_kst 1.105000e-02   p_cons 1.107750e-01   p_joint 2.785000e-02

Joint ci ratio: 1.004452e-01	ci left: 2.807328e-02	ci right 3.106167e-02	k: 1477	n:50000
Cons ci ratio: 4.955683e-02	ci left: 1.084570e-01	ci right 1.139882e-01	k: 5560	n:50000
KS ci ratio: 1.693674e-01	ci left: 9.701701e-03	ci right 1.151579e-02	k: 529	n:50000
UPP1   50000 perm   11 sec   (4410 perm/sec)   p_kst 1.058000e-02   p_cons 1.112000e-01   p_joint 2.954000e-02

Joint ci ratio: 9.785240e-02	ci left: 2.477385e-02	ci right 2.733894e-02	k: 1562	n:60000
Cons ci ratio: 4.522456e-02	ci left: 1.087610e-01	ci right 1.138100e-01	k: 6676	n:60000
KS ci ratio: 1.526814e-01	ci left: 1.003646e-02	ci right 1.171136e-02	k: 651	n:60000
UPP1   60000 perm   14 sec   (4325 perm/sec)   p_kst 1.085000e-02   p_cons 1.112667e-01   p_joint 2.603333e-02

Joint ci ratio: 1.059750e-01	ci left: 1.815450e-02	ci right 2.019991e-02	k: 1341	n:70000
Cons ci ratio: 4.192082e-02	ci left: 1.087102e-01	ci right 1.133792e-01	k: 7772	n:70000
KS ci ratio: 1.388550e-01	ci left: 1.047497e-02	ci right 1.205165e-02	k: 787	n:70000
UPP1   70000 perm   17 sec   (4231 perm/sec)   p_kst 1.124286e-02   p_cons 1.110286e-01   p_joint 1.915714e-02

Joint ci ratio: 1.054273e-01	ci left: 1.609116e-02	ci right 1.789411e-02	k: 1358	n:80000
Cons ci ratio: 3.916980e-02	ci left: 1.090789e-01	ci right 1.134493e-01	k: 8900	n:80000
KS ci ratio: 1.299288e-01	ci left: 1.051858e-02	ci right 1.199219e-02	k: 899	n:80000
UPP1   80000 perm   19 sec   (4156 perm/sec)   p_kst 1.123750e-02   p_cons 1.112500e-01   p_joint 1.697500e-02

Joint ci ratio: 1.094371e-01	ci left: 1.328579e-02	ci right 1.483465e-02	k: 1264	n:90000
Cons ci ratio: 3.698085e-02	ci left: 1.089327e-01	ci right 1.130480e-01	k: 9988	n:90000
KS ci ratio: 1.229595e-01	ci left: 1.047961e-02	ci right 1.186327e-02	k: 1004	n:90000
UPP1   90000 perm   22 sec   (4066 perm/sec)   p_kst 1.115556e-02   p_cons 1.109778e-01   p_joint 1.404444e-02

Joint ci ratio: 1.044469e-01	ci left: 1.316401e-02	ci right 1.462439e-02	k: 1388	n:100000
Cons ci ratio: 3.508293e-02	ci left: 1.090395e-01	ci right 1.129431e-01	k: 11098	n:100000
KS ci ratio: 1.177567e-01	ci left: 1.031421e-02	ci right 1.161439e-02	k: 1095	n:100000
UPP1   100000 perm   25 sec   (3998 perm/sec)   p_kst 1.095000e-02   p_cons 1.109800e-01   p_joint 1.388000e-02

Joint ci ratio: 1.083297e-01	ci left: 1.112597e-02	ci right 1.240905e-02	k: 1293	n:110000
Cons ci ratio: 3.349333e-02	ci left: 1.088786e-01	ci right 1.125965e-01	k: 12180	n:110000
KS ci ratio: 1.125887e-01	ci left: 1.028594e-02	ci right 1.152187e-02	k: 1198	n:110000
UPP1   110000 perm   28 sec   (3931 perm/sec)   p_kst 1.089091e-02   p_cons 1.107273e-01   p_joint 1.175455e-02

Joint ci ratio: 1.037787e-01	ci left: 1.113984e-02	ci right 1.236725e-02	k: 1409	n:120000
Cons ci ratio: 3.209238e-02	ci left: 1.088059e-01	ci right 1.123629e-01	k: 13269	n:120000
KS ci ratio: 1.078372e-01	ci left: 1.030398e-02	ci right 1.148650e-02	k: 1306	n:120000
UPP1   120000 perm   31 sec   (3866 perm/sec)   p_kst 1.088333e-02   p_cons 1.105750e-01   p_joint 1.174167e-02

Joint ci ratio: 1.003239e-01	ci left: 1.102500e-02	ci right 1.219694e-02	k: 1508	n:130000
Cons ci ratio: 3.088876e-02	ci left: 1.085256e-01	ci right 1.119380e-01	k: 14329	n:130000
KS ci ratio: 1.036776e-01	ci left: 1.031267e-02	ci right 1.144776e-02	k: 1413	n:130000
UPP1   130000 perm   34 sec   (3805 perm/sec)   p_kst 1.086923e-02   p_cons 1.102231e-01   p_joint 1.160000e-02

Joint ci ratio: 8.787602e-02	ci left: 1.339806e-02	ci right 1.463648e-02	k: 1961	n:140000
Cons ci ratio: 2.979044e-02	ci left: 1.084223e-01	ci right 1.117082e-01	k: 15408	n:140000
KS ci ratio: 9.986546e-02	ci left: 1.034178e-02	ci right 1.143576e-02	k: 1523	n:140000
UPP1   140000 perm   37 sec   (3742 perm/sec)   p_kst 1.087857e-02   p_cons 1.100571e-01   p_joint 1.400714e-02

Outputting figure to mutsig2_images.part000000000187/UPP1.6_961_140000_0.010879_0.11006_0.014007.png
                gene_name: UPP1
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 36 percent done.
USHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
Cons ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
KS ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
USHBP1   10000 perm   2 sec   (5563 perm/sec)   p_kst 4.495000e-01   p_cons 8.138000e-01   p_joint 6.783000e-01

Outputting figure to mutsig2_images.part000000000187/USHBP1.6_2160_10000_0.4495_0.8138_0.6783.png
                gene_name: USHBP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 37 percent done.
USP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
Cons ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
KS ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
USP4   10000 perm   2 sec   (4487 perm/sec)   p_kst 1.160000e-01   p_cons 9.750000e-02   p_joint 1.135000e-01

Joint ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
Cons ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
KS ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
USP4   20000 perm   5 sec   (4062 perm/sec)   p_kst 1.097500e-01   p_cons 9.830000e-02   p_joint 1.123000e-01

Outputting figure to mutsig2_images.part000000000187/USP4.6_2980_20000_0.10975_0.0983_0.1123.png
                gene_name: USP4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 39 percent done.
UNC13D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KS ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
UNC13D   10000 perm   2 sec   (4871 perm/sec)   p_kst 2.696000e-01   p_cons 5.250000e-02   p_joint 1.831000e-01

Joint ci ratio: 9.620311e-02	ci left: 7.295085e-02	ci right 8.037278e-02	k: 1532	n:20000
Cons ci ratio: 1.220452e-01	ci left: 4.604902e-02	ci right 5.208294e-02	k: 980	n:20000
KS ci ratio: 4.541590e-02	ci left: 2.651961e-01	ci right 2.775704e-01	k: 5427	n:20000
UNC13D   20000 perm   5 sec   (4293 perm/sec)   p_kst 2.713500e-01   p_cons 4.900000e-02   p_joint 7.660000e-02

Joint ci ratio: 8.352297e-02	ci left: 6.553607e-02	ci right 7.128119e-02	k: 2051	n:30000
Cons ci ratio: 9.692741e-02	ci left: 4.918871e-02	ci right 5.423189e-02	k: 1550	n:30000
KS ci ratio: 3.722002e-02	ci left: 2.648826e-01	ci right 2.749620e-01	k: 8097	n:30000
UNC13D   30000 perm   7 sec   (4081 perm/sec)   p_kst 2.699000e-01   p_cons 5.166667e-02   p_joint 6.836667e-02

Outputting figure to mutsig2_images.part000000000187/UNC13D.5_3401_30000_0.2699_0.051667_0.068367.png
                gene_name: UNC13D
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 40 percent done.
UNC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
UNC5A   10000 perm   2 sec   (4931 perm/sec)   p_kst 9.240000e-02   p_cons 2.630000e-01   p_joint 1.491000e-01

Joint ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
Cons ci ratio: 4.611509e-02	ci left: 2.592404e-01	ci right 2.715279e-01	k: 5307	n:20000
KS ci ratio: 8.545162e-02	ci left: 9.111751e-02	ci right 9.930061e-02	k: 1903	n:20000
UNC5A   20000 perm   5 sec   (4427 perm/sec)   p_kst 9.515000e-02   p_cons 2.653500e-01   p_joint 8.695000e-02

Outputting figure to mutsig2_images.part000000000187/UNC5A.5_2589_20000_0.09515_0.26535_0.08695.png
                gene_name: UNC5A
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 42 percent done.
UNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
Cons ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
KS ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
UNG   10000 perm   2 sec   (5261 perm/sec)   p_kst 4.219000e-01   p_cons 1.427000e-01   p_joint 2.797000e-01

Outputting figure to mutsig2_images.part000000000187/UNG.5_1075_10000_0.4219_0.1427_0.2797.png
                gene_name: UNG
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 43 percent done.
UNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
UNK   10000 perm   2 sec   (4953 perm/sec)   p_kst 6.974000e-01   p_cons 9.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNK.5_2729_10000_0.6974_0.9031_1.png
                gene_name: UNK
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
USP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
USP13   10000 perm   2 sec   (4912 perm/sec)   p_kst 9.321000e-01   p_cons 2.754000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP13.5_2676_10000_0.9321_0.2754_1.png
                gene_name: USP13
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
USP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
Cons ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
KS ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
USP25   10000 perm   2 sec   (4959 perm/sec)   p_kst 5.430000e-02   p_cons 6.812000e-01   p_joint 1.219000e-01

Joint ci ratio: 7.350328e-02	ci left: 1.199050e-01	ci right 1.291044e-01	k: 2489	n:20000
Cons ci ratio: 1.872860e-02	ci left: 6.800691e-01	ci right 6.929767e-01	k: 13731	n:20000
KS ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
USP25   20000 perm   5 sec   (4417 perm/sec)   p_kst 5.530000e-02   p_cons 6.865500e-01   p_joint 1.244500e-01

Joint ci ratio: 6.391909e-02	ci left: 1.078279e-01	ci right 1.149808e-01	k: 3341	n:30000
Cons ci ratio: 1.537199e-02	ci left: 6.790061e-01	ci right 6.895582e-01	k: 20529	n:30000
KS ci ratio: 9.363095e-02	ci left: 5.260970e-02	ci right 5.781019e-02	k: 1655	n:30000
USP25   30000 perm   7 sec   (4165 perm/sec)   p_kst 5.516667e-02   p_cons 6.843000e-01   p_joint 1.113667e-01

Outputting figure to mutsig2_images.part000000000187/USP25.5_3264_30000_0.055167_0.6843_0.11137.png
                gene_name: USP25
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 48 percent done.
USP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
Cons ci ratio: 2.105514e-02	ci left: 7.678000e-01	ci right 7.842389e-01	k: 7761	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
USP31   10000 perm   2 sec   (4334 perm/sec)   p_kst 3.080000e-01   p_cons 7.761000e-01   p_joint 4.985000e-01

Outputting figure to mutsig2_images.part000000000187/USP31.5_4123_10000_0.308_0.7761_0.4985.png
                gene_name: USP31
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 49 percent done.
USP39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
Cons ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
KS ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
USP39   10000 perm   2 sec   (4912 perm/sec)   p_kst 7.916000e-01   p_cons 4.139000e-01   p_joint 7.732000e-01

Outputting figure to mutsig2_images.part000000000187/USP39.5_1750_10000_0.7916_0.4139_0.7732.png
                gene_name: USP39
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 51 percent done.
UPF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
Cons ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
KS ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
UPF3B   10000 perm   2 sec   (5587 perm/sec)   p_kst 1.970000e-01   p_cons 5.633000e-01   p_joint 4.637000e-01

Outputting figure to mutsig2_images.part000000000187/UPF3B.4_1496_10000_0.197_0.5633_0.4637.png
                gene_name: UPF3B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 52 percent done.
UPK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
UPK1B   10000 perm   2 sec   (6349 perm/sec)   p_kst 4.535000e-01   p_cons 3.525000e-01   p_joint 5.101000e-01

Outputting figure to mutsig2_images.part000000000187/UPK1B.4_811_10000_0.4535_0.3525_0.5101.png
                gene_name: UPK1B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 54 percent done.
UPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
Cons ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
KS ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
UPRT   10000 perm   2 sec   (6626 perm/sec)   p_kst 9.358000e-01   p_cons 1.495000e-01   p_joint 4.972000e-01

Outputting figure to mutsig2_images.part000000000187/UPRT.4_958_10000_0.9358_0.1495_0.4972.png
                gene_name: UPRT
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 55 percent done.
UQCC
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
UQCC   10000 perm   2 sec   (5975 perm/sec)   p_kst 9.851000e-01   p_cons 7.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UQCC.3_940_10000_0.9851_0.7318_1.png
                gene_name: UQCC
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
UQCRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
UQCRB   10000 perm   2 sec   (6484 perm/sec)   p_kst 7.265000e-01   p_cons 9.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UQCRB.4_352_10000_0.7265_0.9557_1.png
                gene_name: UQCRB
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
UQCRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 2.771443e-02	ci left: 6.573633e-01	ci right 6.759395e-01	k: 6667	n:10000
UQCRC2   10000 perm   2 sec   (5323 perm/sec)   p_kst 6.667000e-01   p_cons 3.764000e-01   p_joint 8.107000e-01

Outputting figure to mutsig2_images.part000000000187/UQCRC2.4_1418_10000_0.6667_0.3764_0.8107.png
                gene_name: UQCRC2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 60 percent done.
USH1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
USH1C   10000 perm   2 sec   (5057 perm/sec)   p_kst 8.942000e-01   p_cons 2.013000e-01   p_joint 7.132000e-01

Outputting figure to mutsig2_images.part000000000187/USH1C.4_2886_10000_0.8942_0.2013_0.7132.png
                gene_name: USH1C
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 61 percent done.
USO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
Cons ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
KS ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
USO1   10000 perm   2 sec   (4780 perm/sec)   p_kst 6.185000e-01   p_cons 9.386000e-01   p_joint 6.919000e-01

Outputting figure to mutsig2_images.part000000000187/USO1.4_2826_10000_0.6185_0.9386_0.6919.png
                gene_name: USO1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 63 percent done.
USP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
Cons ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
KS ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
USP11   10000 perm   2 sec   (4690 perm/sec)   p_kst 2.211000e-01   p_cons 4.080000e-02   p_joint 8.930000e-02

Joint ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
Cons ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
KS ci ratio: 5.286234e-02	ci left: 2.099173e-01	ci right 2.213655e-01	k: 4312	n:20000
USP11   20000 perm   5 sec   (4329 perm/sec)   p_kst 2.156000e-01   p_cons 4.010000e-02   p_joint 9.295000e-02

Joint ci ratio: 7.976814e-02	ci left: 7.152057e-02	ci right 7.749548e-02	k: 2234	n:30000
Cons ci ratio: 1.114056e-01	ci left: 3.742123e-02	ci right 4.186849e-02	k: 1188	n:30000
KS ci ratio: 4.311748e-02	ci left: 2.113213e-01	ci right 2.206671e-01	k: 6479	n:30000
USP11   30000 perm   7 sec   (4167 perm/sec)   p_kst 2.159667e-01   p_cons 3.960000e-02   p_joint 7.446667e-02

Joint ci ratio: 7.056362e-02	ci left: 6.909203e-02	ci right 7.417037e-02	k: 2864	n:40000
Cons ci ratio: 9.601890e-02	ci left: 3.807617e-02	ci right 4.194097e-02	k: 1599	n:40000
KS ci ratio: 3.718996e-02	ci left: 2.133163e-01	ci right 2.214248e-01	k: 8694	n:40000
USP11   40000 perm   10 sec   (4042 perm/sec)   p_kst 2.173500e-01   p_cons 3.997500e-02   p_joint 7.160000e-02

Outputting figure to mutsig2_images.part000000000187/USP11.4_2976_40000_0.21735_0.039975_0.0716.png
                gene_name: USP11
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 64 percent done.
USP17L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
Cons ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
USP17L2   10000 perm   2 sec   (5253 perm/sec)   p_kst 2.999000e-01   p_cons 1.674000e-01   p_joint 3.154000e-01

Outputting figure to mutsig2_images.part000000000187/USP17L2.4_1597_10000_0.2999_0.1674_0.3154.png
                gene_name: USP17L2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 66 percent done.
USP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
Cons ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KS ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
USP30   10000 perm   2 sec   (5302 perm/sec)   p_kst 7.277000e-01   p_cons 3.400000e-02   p_joint 2.113000e-01

Joint ci ratio: 4.283475e-02	ci left: 2.887842e-01	ci right 3.014754e-01	k: 5902	n:20000
Cons ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
KS ci ratio: 1.692344e-02	ci left: 7.222282e-01	ci right 7.346054e-01	k: 14569	n:20000
USP30   20000 perm   4 sec   (4800 perm/sec)   p_kst 7.284500e-01   p_cons 3.995000e-02   p_joint 2.951000e-01

Joint ci ratio: 5.449585e-02	ci left: 1.430765e-01	ci right 1.511253e-01	k: 4412	n:30000
Cons ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
KS ci ratio: 1.382674e-02	ci left: 7.231271e-01	ci right 7.332287e-01	k: 21846	n:30000
USP30   30000 perm   7 sec   (4613 perm/sec)   p_kst 7.282000e-01   p_cons 3.380000e-02   p_joint 1.470667e-01

Joint ci ratio: 4.706370e-02	ci left: 1.443104e-01	ci right 1.512908e-01	k: 5911	n:40000
Cons ci ratio: 1.058082e-01	ci left: 3.141701e-02	ci right 3.495118e-02	k: 1326	n:40000
KS ci ratio: 1.198266e-02	ci left: 7.235349e-01	ci right 7.322820e-01	k: 29117	n:40000
USP30   40000 perm   9 sec   (4469 perm/sec)   p_kst 7.279250e-01   p_cons 3.315000e-02   p_joint 1.477750e-01

Joint ci ratio: 4.267614e-02	ci left: 1.412901e-01	ci right 1.474712e-01	k: 7218	n:50000
Cons ci ratio: 9.570998e-02	ci left: 3.090430e-02	ci right 3.403029e-02	k: 1622	n:50000
KS ci ratio: 1.069883e-02	ci left: 7.246992e-01	ci right 7.325143e-01	k: 36431	n:50000
USP30   50000 perm   11 sec   (4357 perm/sec)   p_kst 7.286200e-01   p_cons 3.244000e-02   p_joint 1.443600e-01

Outputting figure to mutsig2_images.part000000000187/USP30.4_1606_50000_0.72862_0.03244_0.14436.png
                gene_name: USP30
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 67 percent done.
USP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
USP36   10000 perm   2 sec   (4868 perm/sec)   p_kst 1.431000e-01   p_cons 7.249000e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000187/USP36.4_3444_10000_0.1431_0.7249_0.2181.png
                gene_name: USP36
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 69 percent done.
USP38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
USP38   10000 perm   2 sec   (4815 perm/sec)   p_kst 7.218000e-01   p_cons 5.560000e-02   p_joint 2.227000e-01

Joint ci ratio: 5.525524e-02	ci left: 1.954648e-01	ci right 2.066223e-01	k: 4020	n:20000
Cons ci ratio: 1.135347e-01	ci left: 5.304786e-02	ci right 5.948191e-02	k: 1124	n:20000
KS ci ratio: 1.724879e-02	ci left: 7.145763e-01	ci right 7.270594e-01	k: 14417	n:20000
USP38   20000 perm   5 sec   (4269 perm/sec)   p_kst 7.208500e-01   p_cons 5.620000e-02   p_joint 2.010000e-01

Joint ci ratio: 4.130106e-02	ci left: 2.261410e-01	ci right 2.357112e-01	k: 6927	n:30000
Cons ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
KS ci ratio: 1.406093e-02	ci left: 7.163896e-01	ci right 7.265675e-01	k: 21645	n:30000
USP38   30000 perm   7 sec   (4100 perm/sec)   p_kst 7.215000e-01   p_cons 5.660000e-02   p_joint 2.309000e-01

Outputting figure to mutsig2_images.part000000000187/USP38.4_3169_30000_0.7215_0.0566_0.2309.png
                gene_name: USP38
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 70 percent done.
UNC45A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
UNC45A   10000 perm   2 sec   (5102 perm/sec)   p_kst 8.930000e-02   p_cons 7.083000e-01   p_joint 2.372000e-01

Joint ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
Cons ci ratio: 1.756627e-02	ci left: 7.071279e-01	ci right 7.197100e-01	k: 14269	n:20000
KS ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
UNC45A   20000 perm   5 sec   (4385 perm/sec)   p_kst 9.180000e-02   p_cons 7.134500e-01   p_joint 1.718000e-01

Outputting figure to mutsig2_images.part000000000187/UNC45A.3_2915_20000_0.0918_0.71345_0.1718.png
                gene_name: UNC45A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 72 percent done.
UPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
UPF1   10000 perm   2 sec   (4806 perm/sec)   p_kst 7.787000e-01   p_cons 2.581000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UPF1.3_3449_10000_0.7787_0.2581_1.png
                gene_name: UPF1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
USF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.437940e-01	ci left: 2.212298e-02	ci right 2.835777e-02	k: 251	n:10000
Cons ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
USF2   10000 perm   2 sec   (6106 perm/sec)   p_kst 2.700000e-03   p_cons 3.056000e-01   p_joint 2.510000e-02

Joint ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
Cons ci ratio: 4.056007e-02	ci left: 3.118460e-01	ci right 3.248068e-01	k: 6366	n:20000
KS ci ratio: 5.278323e-01	ci left: 2.028954e-03	ci right 3.521464e-03	k: 54	n:20000
USF2   20000 perm   4 sec   (5286 perm/sec)   p_kst 2.700000e-03   p_cons 3.183000e-01   p_joint 1.160000e-02

Joint ci ratio: 3.404351e-01	ci left: 3.652208e-03	ci right 5.179552e-03	k: 131	n:30000
Cons ci ratio: 3.333074e-02	ci left: 3.102759e-01	ci right 3.208265e-01	k: 9466	n:30000
KS ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
USF2   30000 perm   6 sec   (4987 perm/sec)   p_kst 2.833333e-03   p_cons 3.155333e-01   p_joint 4.366667e-03

Joint ci ratio: 3.205363e-01	ci left: 3.128777e-03	ci right 4.345020e-03	k: 148	n:40000
Cons ci ratio: 2.896861e-02	ci left: 3.094529e-01	ci right 3.185741e-01	k: 12560	n:40000
KS ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
USF2   40000 perm   8 sec   (4781 perm/sec)   p_kst 3.200000e-03   p_cons 3.140000e-01   p_joint 3.700000e-03

Joint ci ratio: 3.019230e-01	ci left: 2.853302e-03	ci right 3.885687e-03	k: 167	n:50000
Cons ci ratio: 2.601927e-02	ci left: 3.081393e-01	ci right 3.162825e-01	k: 15610	n:50000
KS ci ratio: 3.065342e-01	ci left: 2.760914e-03	ci right 3.778109e-03	k: 162	n:50000
USF2   50000 perm   11 sec   (4648 perm/sec)   p_kst 3.240000e-03   p_cons 3.122000e-01   p_joint 3.340000e-03

Joint ci ratio: 2.074339e-01	ci left: 5.302872e-03	ci right 6.545650e-03	k: 354	n:60000
Cons ci ratio: 2.454282e-02	ci left: 2.946573e-01	ci right 3.019955e-01	k: 17899	n:60000
KS ci ratio: 2.854448e-01	ci left: 2.686511e-03	ci right 3.595935e-03	k: 187	n:60000
USF2   60000 perm   13 sec   (4528 perm/sec)   p_kst 3.116667e-03   p_cons 2.983167e-01   p_joint 5.900000e-03

Joint ci ratio: 1.386771e-01	ci left: 1.050256e-02	ci right 1.208120e-02	k: 789	n:70000
Cons ci ratio: 2.273801e-02	ci left: 2.946415e-01	ci right 3.014324e-01	k: 20862	n:70000
KS ci ratio: 2.638688e-01	ci left: 2.728437e-03	ci right 3.570726e-03	k: 219	n:70000
USF2   70000 perm   16 sec   (4435 perm/sec)   p_kst 3.128571e-03   p_cons 2.980286e-01   p_joint 1.127143e-02

Joint ci ratio: 1.411409e-01	ci left: 8.875580e-03	ci right 1.023534e-02	k: 763	n:80000
Cons ci ratio: 2.128118e-02	ci left: 2.946323e-01	ci right 3.009823e-01	k: 23824	n:80000
KS ci ratio: 2.475333e-01	ci left: 2.738372e-03	ci right 3.523346e-03	k: 249	n:80000
USF2   80000 perm   18 sec   (4344 perm/sec)   p_kst 3.112500e-03   p_cons 2.978000e-01   p_joint 9.537500e-03

Joint ci ratio: 1.473719e-01	ci left: 7.224905e-03	ci right 8.384934e-03	k: 701	n:90000
Cons ci ratio: 2.005457e-02	ci left: 2.950128e-01	ci right 3.010002e-01	k: 26820	n:90000
KS ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
USF2   90000 perm   21 sec   (4262 perm/sec)   p_kst 3.077778e-03   p_cons 2.980000e-01   p_joint 7.788889e-03

Joint ci ratio: 1.570689e-01	ci left: 5.703636e-03	ci right 6.685337e-03	k: 618	n:100000
Cons ci ratio: 1.902185e-02	ci left: 2.952459e-01	ci right 3.009259e-01	k: 29808	n:100000
KS ci ratio: 2.248556e-01	ci left: 2.689395e-03	ci right 3.379930e-03	k: 302	n:100000
USF2   100000 perm   24 sec   (4182 perm/sec)   p_kst 3.020000e-03   p_cons 2.980800e-01   p_joint 6.180000e-03

Joint ci ratio: 1.667302e-01	ci left: 4.583017e-03	ci right 5.425226e-03	k: 549	n:110000
Cons ci ratio: 1.815472e-02	ci left: 2.949624e-01	ci right 3.003755e-01	k: 32743	n:110000
KS ci ratio: 2.188147e-01	ci left: 2.590848e-03	ci right 3.235803e-03	k: 319	n:110000
USF2   110000 perm   27 sec   (4103 perm/sec)   p_kst 2.900000e-03   p_cons 2.976636e-01   p_joint 4.990909e-03

Joint ci ratio: 1.820227e-01	ci left: 3.499526e-03	ci right 4.208117e-03	k: 461	n:120000
Cons ci ratio: 1.741296e-02	ci left: 2.943323e-01	ci right 2.995108e-01	k: 35630	n:120000
KS ci ratio: 2.101313e-01	ci left: 2.587862e-03	ci right 3.203218e-03	k: 346	n:120000
USF2   120000 perm   30 sec   (4029 perm/sec)   p_kst 2.883333e-03   p_cons 2.969167e-01   p_joint 3.841667e-03

Joint ci ratio: 1.778491e-01	ci left: 3.391923e-03	ci right 4.061283e-03	k: 483	n:130000
Cons ci ratio: 1.672005e-02	ci left: 2.946780e-01	ci right 2.996542e-01	k: 38631	n:130000
KS ci ratio: 2.048931e-01	ci left: 2.520053e-03	ci right 3.102476e-03	k: 364	n:130000
USF2   130000 perm   33 sec   (3957 perm/sec)   p_kst 2.800000e-03   p_cons 2.971615e-01   p_joint 3.715385e-03

Joint ci ratio: 1.725855e-01	ci left: 3.354526e-03	ci right 3.994873e-03	k: 513	n:140000
Cons ci ratio: 1.611452e-02	ci left: 2.946998e-01	ci right 2.994944e-01	k: 41593	n:140000
KS ci ratio: 1.982195e-01	ci left: 2.509609e-03	ci right 3.068443e-03	k: 389	n:140000
USF2   140000 perm   36 sec   (3885 perm/sec)   p_kst 2.778571e-03   p_cons 2.970929e-01   p_joint 3.664286e-03

Joint ci ratio: 1.674544e-01	ci left: 3.335145e-03	ci right 3.950954e-03	k: 545	n:150000
Cons ci ratio: 1.557631e-02	ci left: 2.945619e-01	ci right 2.991927e-01	k: 44531	n:150000
KS ci ratio: 1.930936e-01	ci left: 2.475440e-03	ci right 3.010736e-03	k: 410	n:150000
USF2   150000 perm   39 sec   (3817 perm/sec)   p_kst 2.733333e-03   p_cons 2.968733e-01   p_joint 3.633333e-03

Joint ci ratio: 1.577651e-01	ci left: 3.540441e-03	ci right 4.152754e-03	k: 614	n:160000
Cons ci ratio: 1.507465e-02	ci left: 2.948302e-01	ci right 2.993146e-01	k: 47531	n:160000
KS ci ratio: 1.870477e-01	ci left: 2.481447e-03	ci right 2.999333e-03	k: 437	n:160000
USF2   160000 perm   43 sec   (3752 perm/sec)   p_kst 2.731250e-03   p_cons 2.970687e-01   p_joint 3.837500e-03

Joint ci ratio: 1.529886e-01	ci left: 3.552675e-03	ci right 4.146796e-03	k: 653	n:170000
Cons ci ratio: 1.462533e-02	ci left: 2.948754e-01	ci right 2.992256e-01	k: 50498	n:170000
KS ci ratio: 1.825230e-01	ci left: 2.458903e-03	ci right 2.958297e-03	k: 459	n:170000
USF2   170000 perm   46 sec   (3685 perm/sec)   p_kst 2.700000e-03   p_cons 2.970471e-01   p_joint 3.841176e-03

Joint ci ratio: 1.502625e-01	ci left: 3.483569e-03	ci right 4.054819e-03	k: 677	n:180000
Cons ci ratio: 1.419901e-02	ci left: 2.953553e-01	ci right 2.995846e-01	k: 53544	n:180000
KS ci ratio: 1.770271e-01	ci left: 2.476161e-03	ci right 2.962297e-03	k: 488	n:180000
USF2   180000 perm   50 sec   (3623 perm/sec)   p_kst 2.711111e-03   p_cons 2.974667e-01   p_joint 3.761111e-03

Joint ci ratio: 1.436261e-01	ci left: 3.624704e-03	ci right 4.190597e-03	k: 741	n:190000
Cons ci ratio: 1.382879e-02	ci left: 2.951560e-01	ci right 2.992713e-01	k: 56470	n:190000
KS ci ratio: 1.719995e-01	ci left: 2.491804e-03	ci right 2.965676e-03	k: 517	n:190000
USF2   190000 perm   53 sec   (3564 perm/sec)   p_kst 2.721053e-03   p_cons 2.972105e-01   p_joint 3.900000e-03

Joint ci ratio: 1.386636e-01	ci left: 3.703947e-03	ci right 4.260582e-03	k: 795	n:200000
Cons ci ratio: 1.348641e-02	ci left: 2.949679e-01	ci right 2.989779e-01	k: 59394	n:200000
KS ci ratio: 1.687753e-01	ci left: 2.462946e-03	ci right 2.921657e-03	k: 537	n:200000
USF2   200000 perm   57 sec   (3502 perm/sec)   p_kst 2.685000e-03   p_cons 2.969700e-01   p_joint 3.975000e-03

Joint ci ratio: 1.700585e-01	ci left: 2.309167e-03	ci right 2.742842e-03	k: 529	n:210000
Cons ci ratio: 1.272986e-02	ci left: 3.090965e-01	ci right 3.130611e-01	k: 65326	n:210000
KS ci ratio: 1.651334e-01	ci left: 2.455173e-03	ci right 2.901588e-03	k: 561	n:210000
USF2   210000 perm   61 sec   (3444 perm/sec)   p_kst 2.671429e-03   p_cons 3.110762e-01   p_joint 2.519048e-03

Joint ci ratio: 1.655872e-01	ci left: 2.330490e-03	ci right 2.755514e-03	k: 558	n:220000
Cons ci ratio: 1.243940e-02	ci left: 3.090659e-01	ci right 3.129391e-01	k: 68420	n:220000
KS ci ratio: 1.602167e-01	ci left: 2.496194e-03	ci right 2.935253e-03	k: 596	n:220000
USF2   220000 perm   65 sec   (3390 perm/sec)   p_kst 2.709091e-03   p_cons 3.110000e-01   p_joint 2.536364e-03

Joint ci ratio: 1.610396e-01	ci left: 2.362612e-03	ci right 2.780516e-03	k: 590	n:230000
Cons ci ratio: 1.216672e-02	ci left: 3.090824e-01	ci right 3.128702e-01	k: 71524	n:230000
KS ci ratio: 1.559622e-01	ci left: 2.525469e-03	ci right 2.956779e-03	k: 629	n:230000
USF2   230000 perm   69 sec   (3339 perm/sec)   p_kst 2.734783e-03   p_cons 3.109739e-01   p_joint 2.565217e-03

Joint ci ratio: 1.363248e-01	ci left: 3.199219e-03	ci right 3.671232e-03	k: 823	n:240000
Cons ci ratio: 1.191678e-02	ci left: 3.088987e-01	ci right 3.126059e-01	k: 74580	n:240000
KS ci ratio: 1.533101e-01	ci left: 2.508359e-03	ci right 2.928793e-03	k: 651	n:240000
USF2   240000 perm   73 sec   (3287 perm/sec)   p_kst 2.712500e-03   p_cons 3.107500e-01   p_joint 3.429167e-03

Joint ci ratio: 1.334405e-01	ci left: 3.210392e-03	ci right 3.673238e-03	k: 859	n:250000
Cons ci ratio: 1.167880e-02	ci left: 3.088342e-01	ci right 3.124662e-01	k: 77662	n:250000
KS ci ratio: 1.504534e-01	ci left: 2.504224e-03	ci right 2.915440e-03	k: 676	n:250000
USF2   250000 perm   77 sec   (3241 perm/sec)   p_kst 2.704000e-03   p_cons 3.106480e-01   p_joint 3.436000e-03

Joint ci ratio: 1.308786e-01	ci left: 3.213362e-03	ci right 3.667049e-03	k: 893	n:260000
Cons ci ratio: 1.144866e-02	ci left: 3.089943e-01	ci right 3.125561e-01	k: 80801	n:260000
KS ci ratio: 1.474352e-01	ci left: 2.511587e-03	ci right 2.915010e-03	k: 704	n:260000
USF2   260000 perm   81 sec   (3195 perm/sec)   p_kst 2.707692e-03   p_cons 3.107731e-01   p_joint 3.434615e-03

Joint ci ratio: 1.283201e-01	ci left: 3.223360e-03	ci right 3.668885e-03	k: 929	n:270000
Cons ci ratio: 1.123317e-02	ci left: 3.090840e-01	ci right 3.125793e-01	k: 83924	n:270000
KS ci ratio: 1.446906e-01	ci left: 2.514911e-03	ci right 2.910698e-03	k: 731	n:270000
USF2   270000 perm   86 sec   (3150 perm/sec)   p_kst 2.707407e-03   p_cons 3.108296e-01   p_joint 3.440741e-03

Joint ci ratio: 1.256452e-01	ci left: 3.246562e-03	ci right 3.685243e-03	k: 969	n:280000
Cons ci ratio: 1.103428e-02	ci left: 3.089789e-01	ci right 3.124107e-01	k: 86994	n:280000
KS ci ratio: 1.414412e-01	ci left: 2.542178e-03	ci right 2.932513e-03	k: 765	n:280000
USF2   280000 perm   90 sec   (3105 perm/sec)   p_kst 2.732143e-03   p_cons 3.106929e-01   p_joint 3.460714e-03

Joint ci ratio: 1.232534e-01	ci left: 3.261568e-03	ci right 3.693276e-03	k: 1007	n:290000
Cons ci ratio: 1.084848e-02	ci left: 3.087680e-01	ci right 3.121393e-01	k: 90031	n:290000
KS ci ratio: 1.389248e-01	ci left: 2.547683e-03	ci right 2.931328e-03	k: 793	n:290000
USF2   290000 perm   95 sec   (3056 perm/sec)   p_kst 2.734483e-03   p_cons 3.104517e-01   p_joint 3.472414e-03

Joint ci ratio: 1.209932e-01	ci left: 3.275648e-03	ci right 3.700699e-03	k: 1045	n:300000
Cons ci ratio: 1.066610e-02	ci left: 3.087979e-01	ci right 3.121125e-01	k: 93136	n:300000
KS ci ratio: 1.361235e-01	ci left: 2.568977e-03	ci right 2.947397e-03	k: 826	n:300000
USF2   300000 perm   100 sec   (3013 perm/sec)   p_kst 2.753333e-03   p_cons 3.104533e-01   p_joint 3.483333e-03

Joint ci ratio: 1.192955e-01	ci left: 3.263846e-03	ci right 3.681005e-03	k: 1075	n:310000
Cons ci ratio: 1.050014e-02	ci left: 3.085203e-01	ci right 3.117801e-01	k: 96146	n:310000
KS ci ratio: 1.342702e-01	ci left: 2.557790e-03	ci right 2.929022e-03	k: 849	n:310000
USF2   310000 perm   104 sec   (2973 perm/sec)   p_kst 2.738710e-03   p_cons 3.101484e-01   p_joint 3.467742e-03

Joint ci ratio: 1.194134e-01	ci left: 3.155777e-03	ci right 3.559549e-03	k: 1073	n:320000
Cons ci ratio: 1.033685e-02	ci left: 3.084601e-01	ci right 3.116683e-01	k: 99220	n:320000
KS ci ratio: 1.325668e-01	ci left: 2.544313e-03	ci right 2.908535e-03	k: 871	n:320000
USF2   320000 perm   109 sec   (2934 perm/sec)   p_kst 2.721875e-03   p_cons 3.100625e-01   p_joint 3.353125e-03

Joint ci ratio: 1.408272e-01	ci left: 2.177434e-03	ci right 2.510190e-03	k: 772	n:330000
Cons ci ratio: 1.017806e-02	ci left: 3.085251e-01	ci right 3.116843e-01	k: 102334	n:330000
KS ci ratio: 1.303430e-01	ci left: 2.555133e-03	ci right 2.914294e-03	k: 901	n:330000
USF2   330000 perm   114 sec   (2895 perm/sec)   p_kst 2.730303e-03   p_cons 3.101030e-01   p_joint 2.339394e-03

Joint ci ratio: 1.389529e-01	ci left: 2.172994e-03	ci right 2.500286e-03	k: 793	n:340000
Cons ci ratio: 1.002458e-02	ci left: 3.086629e-01	ci right 3.117756e-01	k: 105474	n:340000
KS ci ratio: 1.282966e-01	ci left: 2.562518e-03	ci right 2.916630e-03	k: 930	n:340000
USF2   340000 perm   119 sec   (2859 perm/sec)   p_kst 2.735294e-03   p_cons 3.102176e-01   p_joint 2.332353e-03

Joint ci ratio: 1.367317e-01	ci left: 2.182633e-03	ci right 2.505695e-03	k: 819	n:350000
Cons ci ratio: 9.877713e-03	ci left: 3.087989e-01	ci right 3.118671e-01	k: 108616	n:350000
KS ci ratio: 1.260150e-01	ci left: 2.583357e-03	ci right 2.933527e-03	k: 964	n:350000
USF2   350000 perm   124 sec   (2820 perm/sec)   p_kst 2.754286e-03   p_cons 3.103314e-01   p_joint 2.340000e-03

Joint ci ratio: 1.345341e-01	ci left: 2.194460e-03	ci right 2.513634e-03	k: 846	n:360000
Cons ci ratio: 9.732946e-03	ci left: 3.091107e-01	ci right 3.121367e-01	k: 111824	n:360000
KS ci ratio: 1.237268e-01	ci left: 2.608476e-03	ci right 2.955160e-03	k: 1000	n:360000
USF2   360000 perm   129 sec   (2784 perm/sec)   p_kst 2.777778e-03   p_cons 3.106222e-01   p_joint 2.350000e-03

Joint ci ratio: 1.326675e-01	ci left: 2.197848e-03	ci right 2.512730e-03	k: 870	n:370000
Cons ci ratio: 9.602776e-03	ci left: 3.090308e-01	ci right 3.120154e-01	k: 114893	n:370000
KS ci ratio: 1.220913e-01	ci left: 2.608706e-03	ci right 2.950506e-03	k: 1027	n:370000
USF2   370000 perm   134 sec   (2751 perm/sec)   p_kst 2.775676e-03   p_cons 3.105216e-01   p_joint 2.351351e-03

Joint ci ratio: 1.204046e-01	ci left: 2.614057e-03	ci right 2.951490e-03	k: 1056	n:380000
Cons ci ratio: 9.475596e-03	ci left: 3.090500e-01	ci right 3.119950e-01	k: 117998	n:380000
KS ci ratio: 1.199503e-01	ci left: 2.634479e-03	ci right 2.973173e-03	k: 1064	n:380000
USF2   380000 perm   140 sec   (2719 perm/sec)   p_kst 2.800000e-03   p_cons 3.105211e-01   p_joint 2.778947e-03

Joint ci ratio: 1.190059e-01	ci left: 2.609213e-03	ci right 2.941833e-03	k: 1081	n:390000
Cons ci ratio: 9.351266e-03	ci left: 3.091632e-01	ci right 3.120704e-01	k: 121140	n:390000
KS ci ratio: 1.185127e-01	ci left: 2.631606e-03	ci right 2.965593e-03	k: 1090	n:390000
USF2   390000 perm   145 sec   (2688 perm/sec)   p_kst 2.794872e-03   p_cons 3.106154e-01   p_joint 2.771795e-03

Joint ci ratio: 1.270974e-01	ci left: 2.221678e-03	ci right 2.525603e-03	k: 948	n:400000
Cons ci ratio: 9.232244e-03	ci left: 3.092460e-01	ci right 3.121167e-01	k: 124272	n:400000
KS ci ratio: 1.169682e-01	ci left: 2.636181e-03	ci right 2.966087e-03	k: 1119	n:400000
USF2   400000 perm   151 sec   (2656 perm/sec)   p_kst 2.797500e-03   p_cons 3.106800e-01   p_joint 2.370000e-03

Joint ci ratio: 1.071116e-01	ci left: 3.081643e-03	ci right 3.432752e-03	k: 1334	n:410000
Cons ci ratio: 9.427124e-03	ci left: 2.952289e-01	ci right 2.980276e-01	k: 121617	n:410000
KS ci ratio: 1.155834e-01	ci left: 2.635822e-03	ci right 2.961511e-03	k: 1146	n:410000
USF2   410000 perm   156 sec   (2625 perm/sec)   p_kst 2.795122e-03   p_cons 2.966268e-01   p_joint 3.253659e-03

Joint ci ratio: 1.028018e-01	ci left: 3.272593e-03	ci right 3.629550e-03	k: 1448	n:420000
Cons ci ratio: 9.313651e-03	ci left: 2.952712e-01	ci right 2.980364e-01	k: 124594	n:420000
KS ci ratio: 1.146391e-01	ci left: 2.616999e-03	ci right 2.937541e-03	k: 1165	n:420000
USF2   420000 perm   162 sec   (2596 perm/sec)   p_kst 2.773810e-03   p_cons 2.966524e-01   p_joint 3.447619e-03

Joint ci ratio: 1.048212e-01	ci left: 3.071883e-03	ci right 3.413935e-03	k: 1393	n:430000
Cons ci ratio: 9.204385e-03	ci left: 2.953023e-01	ci right 2.980353e-01	k: 127567	n:430000
KS ci ratio: 1.133821e-01	ci left: 2.614879e-03	ci right 2.931415e-03	k: 1191	n:430000
USF2   430000 perm   168 sec   (2566 perm/sec)   p_kst 2.769767e-03   p_cons 2.966674e-01   p_joint 3.239535e-03

Joint ci ratio: 9.033533e-02	ci left: 4.068804e-03	ci right 4.455951e-03	k: 1874	n:440000
Cons ci ratio: 9.100611e-03	ci left: 2.952529e-01	ci right 2.979544e-01	k: 130505	n:440000
KS ci ratio: 1.117068e-01	ci left: 2.634966e-03	ci right 2.948911e-03	k: 1227	n:440000
USF2   440000 perm   173 sec   (2537 perm/sec)   p_kst 2.788636e-03   p_cons 2.966023e-01   p_joint 4.259091e-03

Joint ci ratio: 8.908400e-02	ci left: 4.093524e-03	ci right 4.477347e-03	k: 1927	n:450000
Cons ci ratio: 8.997010e-03	ci left: 2.953567e-01	ci right 2.980282e-01	k: 133511	n:450000
KS ci ratio: 1.102787e-01	ci left: 2.645549e-03	ci right 2.956463e-03	k: 1259	n:450000
USF2   450000 perm   179 sec   (2509 perm/sec)   p_kst 2.797778e-03   p_cons 2.966911e-01   p_joint 4.282222e-03

Joint ci ratio: 9.167888e-02	ci left: 3.777153e-03	ci right 4.142182e-03	k: 1820	n:460000
Cons ci ratio: 8.897471e-03	ci left: 2.954279e-01	ci right 2.980703e-01	k: 136504	n:460000
KS ci ratio: 1.093718e-01	ci left: 2.632435e-03	ci right 2.939099e-03	k: 1280	n:460000
USF2   460000 perm   185 sec   (2482 perm/sec)   p_kst 2.782609e-03   p_cons 2.967478e-01   p_joint 3.956522e-03

Joint ci ratio: 9.188560e-02	ci left: 3.680150e-03	ci right 4.036648e-03	k: 1812	n:470000
Cons ci ratio: 8.799639e-03	ci left: 2.955685e-01	ci right 2.981830e-01	k: 139531	n:470000
KS ci ratio: 1.082787e-01	ci left: 2.630239e-03	ci right 2.933389e-03	k: 1306	n:470000
USF2   470000 perm   191 sec   (2456 perm/sec)   p_kst 2.778723e-03   p_cons 2.968745e-01   p_joint 3.855319e-03

Joint ci ratio: 9.059429e-02	ci left: 3.709344e-03	ci right 4.063353e-03	k: 1864	n:480000
Cons ci ratio: 8.708744e-03	ci left: 2.955223e-01	ci right 2.981093e-01	k: 142471	n:480000
KS ci ratio: 1.068566e-01	ci left: 2.646398e-03	ci right 2.947153e-03	k: 1341	n:480000
USF2   480000 perm   198 sec   (2430 perm/sec)   p_kst 2.793750e-03   p_cons 2.968146e-01   p_joint 3.883333e-03

Joint ci ratio: 8.961441e-02	ci left: 3.715431e-03	ci right 4.065985e-03	k: 1905	n:490000
Cons ci ratio: 8.617785e-03	ci left: 2.956148e-01	ci right 2.981754e-01	k: 145478	n:490000
KS ci ratio: 1.056817e-01	ci left: 2.651987e-03	ci right 2.949858e-03	k: 1371	n:490000
USF2   490000 perm   204 sec   (2404 perm/sec)   p_kst 2.797959e-03   p_cons 2.968939e-01   p_joint 3.887755e-03

Joint ci ratio: 9.026194e-02	ci left: 3.588327e-03	ci right 3.929463e-03	k: 1878	n:500000
Cons ci ratio: 8.532805e-03	ci left: 2.955479e-01	ci right 2.980825e-01	k: 148407	n:500000
KS ci ratio: 1.049962e-01	ci left: 2.633998e-03	ci right 2.927811e-03	k: 1389	n:500000
USF2   500000 perm   210 sec   (2379 perm/sec)   p_kst 2.778000e-03   p_cons 2.968140e-01   p_joint 3.756000e-03

Joint ci ratio: 9.041028e-02	ci left: 3.506462e-03	ci right 3.840392e-03	k: 1872	n:510000
Cons ci ratio: 8.448822e-03	ci left: 2.955562e-01	ci right 2.980658e-01	k: 151373	n:510000
KS ci ratio: 1.039912e-01	ci left: 2.633908e-03	ci right 2.924727e-03	k: 1416	n:510000
USF2   510000 perm   217 sec   (2355 perm/sec)   p_kst 2.776471e-03   p_cons 2.968098e-01   p_joint 3.670588e-03

Joint ci ratio: 8.720101e-02	ci left: 3.702299e-03	ci right 4.041727e-03	k: 2012	n:520000
Cons ci ratio: 8.365999e-03	ci left: 2.956276e-01	ci right 2.981131e-01	k: 154372	n:520000
KS ci ratio: 1.032298e-01	ci left: 2.622594e-03	ci right 2.909914e-03	k: 1437	n:520000
USF2   520000 perm   223 sec   (2331 perm/sec)   p_kst 2.763462e-03   p_cons 2.968692e-01   p_joint 3.869231e-03

Joint ci ratio: 9.494930e-02	ci left: 3.053411e-03	ci right 3.359607e-03	k: 1698	n:530000
Cons ci ratio: 8.286650e-03	ci left: 2.956418e-01	ci right 2.981038e-01	k: 157342	n:530000
KS ci ratio: 1.019952e-01	ci left: 2.637455e-03	ci right 2.922741e-03	k: 1472	n:530000
USF2   530000 perm   230 sec   (2307 perm/sec)   p_kst 2.777358e-03   p_cons 2.968717e-01   p_joint 3.203774e-03

Joint ci ratio: 8.036157e-02	ci left: 4.210688e-03	ci right 4.565032e-03	k: 2368	n:540000
Cons ci ratio: 8.209408e-03	ci left: 2.956612e-01	ci right 2.981002e-01	k: 160315	n:540000
KS ci ratio: 1.006702e-01	ci left: 2.659006e-03	ci right 2.942666e-03	k: 1511	n:540000
USF2   540000 perm   236 sec   (2284 perm/sec)   p_kst 2.798148e-03   p_cons 2.968796e-01   p_joint 4.385185e-03

Joint ci ratio: 8.673583e-02	ci left: 3.539473e-03	ci right 3.862154e-03	k: 2034	n:550000
Cons ci ratio: 8.131737e-03	ci left: 2.958107e-01	ci right 2.982278e-01	k: 163360	n:550000
KS ci ratio: 9.971835e-02	ci left: 2.662067e-03	ci right 2.943211e-03	k: 1540	n:550000
USF2   550000 perm   243 sec   (2261 perm/sec)   p_kst 2.800000e-03   p_cons 2.970182e-01   p_joint 3.698182e-03

Outputting figure to mutsig2_images.part000000000187/USF2.3_1081_550000_0.0028_0.29702_0.0036982.png
                gene_name: USF2
               theta_stop: 0.100 
                    nperm: 550000 
                     p_ks: 0.0028 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0029 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0039 

Current progress: 75 percent done.
USP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
Cons ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
KS ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
USP16   10000 perm   2 sec   (5424 perm/sec)   p_kst 5.495000e-01   p_cons 9.460000e-02   p_joint 4.403000e-01

Joint ci ratio: 3.200847e-02	ci left: 4.216275e-01	ci right 4.353933e-01	k: 8570	n:20000
Cons ci ratio: 8.390194e-02	ci left: 9.425655e-02	ci right 1.025606e-01	k: 1967	n:20000
KS ci ratio: 2.548115e-02	ci left: 5.350142e-01	ci right 5.488736e-01	k: 10839	n:20000
USP16   20000 perm   4 sec   (4768 perm/sec)   p_kst 5.419500e-01   p_cons 9.835000e-02   p_joint 4.285000e-01

Outputting figure to mutsig2_images.part000000000187/USP16.3_2540_20000_0.54195_0.09835_0.4285.png
                gene_name: USP16
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 76 percent done.
USP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
Cons ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
KS ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
USP19   10000 perm   2 sec   (4730 perm/sec)   p_kst 1.791000e-01   p_cons 1.974000e-01   p_joint 1.552000e-01

Outputting figure to mutsig2_images.part000000000187/USP19.3_4057_10000_0.1791_0.1974_0.1552.png
                gene_name: USP19
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 78 percent done.
USP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
Cons ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
USP22   10000 perm   2 sec   (5831 perm/sec)   p_kst 4.911000e-01   p_cons 1.360000e-01   p_joint 5.049000e-01

Outputting figure to mutsig2_images.part000000000187/USP22.3_1630_10000_0.4911_0.136_0.5049.png
                gene_name: USP22
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 79 percent done.
USP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
Cons ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
KS ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
USP42   10000 perm   2 sec   (5540 perm/sec)   p_kst 8.510000e-02   p_cons 2.453000e-01   p_joint 1.045000e-01

Joint ci ratio: 6.762135e-02	ci left: 1.389641e-01	ci right 1.487397e-01	k: 2876	n:20000
Cons ci ratio: 4.760968e-02	ci left: 2.470855e-01	ci right 2.591864e-01	k: 5062	n:20000
KS ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
USP42   20000 perm   4 sec   (4729 perm/sec)   p_kst 8.660000e-02   p_cons 2.531000e-01   p_joint 1.438000e-01

Outputting figure to mutsig2_images.part000000000187/USP42.3_2571_20000_0.0866_0.2531_0.1438.png
                gene_name: USP42
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 81 percent done.
UNC5CL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
KS ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
UNC5CL   10000 perm   2 sec   (6103 perm/sec)   p_kst 9.015000e-01   p_cons 2.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC5CL.2_1589_10000_0.9015_0.2692_1.png
                gene_name: UNC5CL
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
UNCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
UNCX   10000 perm   2 sec   (6131 perm/sec)   p_kst 2.260000e-02   p_cons 5.170000e-02   p_joint 3.000000e-02

Joint ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
Cons ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
KS ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
UNCX   20000 perm   4 sec   (5379 perm/sec)   p_kst 2.200000e-02   p_cons 5.270000e-02   p_joint 4.495000e-02

Joint ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
Cons ci ratio: 1.021382e-01	ci left: 4.440477e-02	ci right 4.921682e-02	k: 1403	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
UNCX   30000 perm   6 sec   (5096 perm/sec)   p_kst 2.090000e-02   p_cons 4.676667e-02   p_joint 9.333333e-03

Joint ci ratio: 9.346211e-02	ci left: 4.015283e-02	ci right 4.411399e-02	k: 1684	n:40000
Cons ci ratio: 8.803601e-02	ci left: 4.514222e-02	ci right 4.932383e-02	k: 1888	n:40000
KS ci ratio: 1.353119e-01	ci left: 1.915790e-02	ci right 2.196231e-02	k: 821	n:40000
UNCX   40000 perm   8 sec   (4907 perm/sec)   p_kst 2.052500e-02   p_cons 4.720000e-02   p_joint 4.210000e-02

Joint ci ratio: 7.657553e-02	ci left: 4.788983e-02	ci right 5.172265e-02	k: 2489	n:50000
Cons ci ratio: 7.902781e-02	ci left: 4.504354e-02	ci right 4.876929e-02	k: 2344	n:50000
KS ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
UNCX   50000 perm   10 sec   (4771 perm/sec)   p_kst 2.046000e-02   p_cons 4.688000e-02   p_joint 4.978000e-02

Joint ci ratio: 6.704731e-02	ci left: 5.208997e-02	ci right 5.572000e-02	k: 3233	n:60000
Cons ci ratio: 7.211542e-02	ci left: 4.523828e-02	ci right 4.863905e-02	k: 2815	n:60000
KS ci ratio: 1.092669e-01	ci left: 1.985137e-02	ci right 2.216196e-02	k: 1259	n:60000
UNCX   60000 perm   13 sec   (4652 perm/sec)   p_kst 2.098333e-02   p_cons 4.691667e-02   p_joint 5.388333e-02

Joint ci ratio: 8.684001e-02	ci left: 2.705602e-02	ci right 2.952615e-02	k: 1979	n:70000
Cons ci ratio: 6.704840e-02	ci left: 4.499399e-02	ci right 4.812945e-02	k: 3258	n:70000
KS ci ratio: 1.002939e-01	ci left: 2.028496e-02	ci right 2.244069e-02	k: 1494	n:70000
UNCX   70000 perm   15 sec   (4541 perm/sec)   p_kst 2.134286e-02   p_cons 4.654286e-02   p_joint 2.827143e-02

Joint ci ratio: 8.084361e-02	ci left: 2.739459e-02	ci right 2.971477e-02	k: 2283	n:80000
Cons ci ratio: 6.263498e-02	ci left: 4.521117e-02	ci right 4.814682e-02	k: 3733	n:80000
KS ci ratio: 9.402957e-02	ci left: 2.026179e-02	ci right 2.227314e-02	k: 1700	n:80000
UNCX   80000 perm   18 sec   (4438 perm/sec)   p_kst 2.125000e-02   p_cons 4.666250e-02   p_joint 2.853750e-02

Outputting figure to mutsig2_images.part000000000187/UNCX.2_1607_80000_0.02125_0.046663_0.028538.png
                gene_name: UNCX
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 84 percent done.
UQCR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
Cons ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
UQCR11   10000 perm   1 sec   (7357 perm/sec)   p_kst 1.233000e-01   p_cons 3.103000e-01   p_joint 6.139000e-01

Joint ci ratio: 2.202752e-02	ci left: 6.061084e-01	ci right 6.196587e-01	k: 12258	n:20000
Cons ci ratio: 4.118028e-02	ci left: 3.053331e-01	ci right 3.182216e-01	k: 6235	n:20000
KS ci ratio: 7.300184e-02	ci left: 1.213813e-01	ci right 1.306278e-01	k: 2519	n:20000
UQCR11   20000 perm   3 sec   (6305 perm/sec)   p_kst 1.259500e-01   p_cons 3.117500e-01   p_joint 6.129000e-01

Outputting figure to mutsig2_images.part000000000187/UQCR11.2_179_20000_0.12595_0.31175_0.6129.png
                gene_name: UQCR11
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 85 percent done.
UQCRFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
Cons ci ratio: 6.146986e-02	ci left: 2.801280e-01	ci right 2.979950e-01	k: 2890	n:10000
KS ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
UQCRFS1   10000 perm   1 sec   (6746 perm/sec)   p_kst 8.180000e-02   p_cons 2.890000e-01   p_joint 2.732000e-01

Joint ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
Cons ci ratio: 4.199048e-02	ci left: 2.970823e-01	ci right 3.098749e-01	k: 6069	n:20000
KS ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
UQCRFS1   20000 perm   3 sec   (5844 perm/sec)   p_kst 7.815000e-02   p_cons 3.034500e-01   p_joint 1.069000e-01

Outputting figure to mutsig2_images.part000000000187/UQCRFS1.2_833_20000_0.07815_0.30345_0.1069.png
                gene_name: UQCRFS1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 87 percent done.
USH1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.857206e-03	ci left: 9.357874e-01	ci right 9.451540e-01	k: 9406	n:10000
Cons ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
USH1G   10000 perm   2 sec   (6618 perm/sec)   p_kst 5.094000e-01   p_cons 7.947000e-01   p_joint 9.406000e-01

Outputting figure to mutsig2_images.part000000000187/USH1G.2_1398_10000_0.5094_0.7947_0.9406.png
                gene_name: USH1G
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 88 percent done.
USP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
KS ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
USP10   10000 perm   2 sec   (5754 perm/sec)   p_kst 2.097000e-01   p_cons 3.919000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP10.2_2453_10000_0.2097_0.3919_1.png
                gene_name: USP10
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
USP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
KS ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
USP12   10000 perm   2 sec   (6556 perm/sec)   p_kst 9.874000e-01   p_cons 5.529000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP12.2_1149_10000_0.9874_0.5529_1.png
                gene_name: USP12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
USP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
Cons ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
KS ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
USP14   10000 perm   2 sec   (6217 perm/sec)   p_kst 5.430000e-02   p_cons 7.625000e-01   p_joint 5.082000e-01

Joint ci ratio: 6.711915e-03	ci left: 9.413908e-01	ci right 9.477792e-01	k: 18893	n:20000
Cons ci ratio: 1.539496e-02	ci left: 7.583041e-01	ci right 7.701190e-01	k: 15285	n:20000
KS ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
USP14   20000 perm   4 sec   (5455 perm/sec)   p_kst 5.200000e-02   p_cons 7.642500e-01   p_joint 9.446500e-01

Joint ci ratio: 5.485723e-03	ci left: 9.418832e-01	ci right 9.470969e-01	k: 28336	n:30000
Cons ci ratio: 1.255773e-02	ci left: 7.597571e-01	ci right 7.693916e-01	k: 22938	n:30000
KS ci ratio: 9.712567e-02	ci left: 4.899332e-02	ci right 5.402732e-02	k: 1544	n:30000
USP14   30000 perm   6 sec   (5160 perm/sec)   p_kst 5.146667e-02   p_cons 7.646000e-01   p_joint 9.445333e-01

Outputting figure to mutsig2_images.part000000000187/USP14.2_1549_30000_0.051467_0.7646_0.94453.png
                gene_name: USP14
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 93 percent done.
USP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
KS ci ratio: 6.851645e-02	ci left: 2.380779e-01	ci right 2.550700e-01	k: 2465	n:10000
USP2   10000 perm   2 sec   (6274 perm/sec)   p_kst 2.465000e-01   p_cons 2.661000e-01   p_joint 8.890000e-02

Joint ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
Cons ci ratio: 4.586218e-02	ci left: 2.613744e-01	ci right 2.736933e-01	k: 5350	n:20000
KS ci ratio: 4.981684e-02	ci left: 2.304758e-01	ci right 2.423009e-01	k: 4727	n:20000
USP2   20000 perm   4 sec   (5447 perm/sec)   p_kst 2.363500e-01   p_cons 2.675000e-01   p_joint 9.020000e-02

Outputting figure to mutsig2_images.part000000000187/USP2.2_2017_20000_0.23635_0.2675_0.0902.png
                gene_name: USP2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 94 percent done.
USP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
USP3   10000 perm   2 sec   (6220 perm/sec)   p_kst 8.886000e-01   p_cons 1.633000e-01   p_joint 8.838000e-01

Outputting figure to mutsig2_images.part000000000187/USP3.2_1623_10000_0.8886_0.1633_0.8838.png
                gene_name: USP3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 96 percent done.
USP35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
Cons ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KS ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
USP35   10000 perm   2 sec   (5375 perm/sec)   p_kst 6.643000e-01   p_cons 4.213000e-01   p_joint 9.185000e-01

Outputting figure to mutsig2_images.part000000000187/USP35.2_3097_10000_0.6643_0.4213_0.9185.png
                gene_name: USP35
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 97 percent done.
USP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.119598e-02	ci left: 6.025685e-01	ci right 6.217661e-01	k: 6122	n:10000
Cons ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
KS ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
USP37   10000 perm   2 sec   (5689 perm/sec)   p_kst 5.988000e-01   p_cons 3.233000e-01   p_joint 6.122000e-01

Outputting figure to mutsig2_images.part000000000187/USP37.2_3032_10000_0.5988_0.3233_0.6122.png
                gene_name: USP37
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 99 percent done.
USP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635899e-03	ci left: 9.838246e-01	ci right 9.884858e-01	k: 9863	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
USP40   10000 perm   2 sec   (5032 perm/sec)   p_kst 4.857000e-01   p_cons 4.556000e-01   p_joint 9.863000e-01

Outputting figure to mutsig2_images.part000000000187/USP40.2_3796_10000_0.4857_0.4556_0.9863.png
                gene_name: USP40
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000187
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 187 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 4422678: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000188> was used as the working directory.
Started at Wed Oct 24 18:10:34 2012
Results reported at Wed Oct 24 18:20:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000188.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000188.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 188  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000188.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    639.19 sec.
    Max Memory :      5266 MB
    Max Swap   :      7643 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
188
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 188
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 188: processing genes 16919 - 17008
Calculating significance of each gene.
Using projection method.
16919	USP43	9.827089e-01
16920	USP44	3.606005e-01
16921	USP45	9.247907e-01
16922	USP46	5.139648e-01
16923	USP47	5.816448e-01
16924	USP48	5.623091e-01
16925	USP49	8.549521e-01
16926	USP5	9.968405e-01
16927	USP50	2.750605e-01
16928	USP51	5.905768e-01
16929	USP53	8.755741e-01
16930	USP54	9.204164e-01
In gene USP6 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 4337    n = 1	mu =   7.03e-07
16931	USP6	3.400617e-01
16932	USP6NL	9.476258e-01
16933	USP7	9.270140e-01
16934	USP8	8.045211e-01
16935	USP9X	9.976706e-01
16936	USP9Y	9.999874e-01
16937	USPL1	9.544131e-01
16938	UST	7.645408e-01
16939	UTP11L	1
16940	UTP14A	9.667317e-01
16941	UTP14C	8.401490e-01
16942	UTP15	1
16943	UTP18	6.591634e-01
16944	UTP20	9.999955e-01
16945	UTP23	1.084628e-01
16946	UTP3	1
16947	UTP6	1.516539e-01
16948	UTRN	9.999979e-01
16949	UTS2	2.377076e-01
16950	UTS2D	1.206757e-02
16951	UTS2R	5.183945e-01
16952	UTY	9.809366e-01
16953	UVRAG	9.430147e-01
16954	UXS1	9.157984e-02
16955	UXT	1.729957e-01
16956	VAC14	8.838516e-01
16957	VAMP1	1
16958	VAMP2	1
16959	VAMP3	1
16960	VAMP4	1
16961	VAMP5	1
16962	VAMP7	1
16963	VAMP8	1
16964	VANGL1	1
16965	VANGL2	5.653236e-01
16966	VAPA	7.358169e-01
16967	VAPB	6.081819e-01
16968	VARS	8.521488e-01
16969	VARS2	8.622020e-01
16970	VASH1	6.189758e-01
16971	VASH2	6.852507e-01
16972	VASN	1
16973	VASP	2.691047e-01
16974	VAT1	1
16975	VAT1L	3.051534e-01
16976	VAV1	9.840354e-01
16977	VAV2	9.901226e-01
16978	VAV3	6.777026e-01
16979	VAX1	2.321123e-02
16980	VAX2	4.861446e-01
16981	VBP1	1
16982	VCAM1	9.284262e-01
16983	VCAN	9.988421e-01
16984	VCL	9.747058e-01
16985	VCP	5.152494e-01
16986	VCPIP1	9.701258e-01
16987	VCX	6.602943e-01
16988	VCX2	1
16989	VCX3A	4.344669e-01
16990	VCX3B	3.569434e-01
16991	VDAC1	1
16992	VDAC2	1
16993	VDAC3	7.994239e-01
16994	VDR	1
16995	VEGFA	8.822089e-01
16996	VEGFB	1
16997	VEGFC	5.600906e-01
16998	VENTX	2.677700e-01
16999	VEPH1	9.935884e-01
17000/18094 17000	VEZF1	7.200845e-01
17001	VEZT	9.262717e-01
17002	VGF	9.165323e-01
17003	VGLL1	2.935409e-01
17004	VGLL2	1
17005	VGLL3	4.766272e-01
17006	VGLL4	1
17007	VHL	6.571995e-01
17008	VHLL	3.130578e-01
Done

Running MutSig 2:
Scatter job 188: processing genes 16919 - 17008
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VCAN
Processing conservation and coverage...
97% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
VCAN   10000 perm   3 sec   (2907 perm/sec)   p_kst 8.527000e-01   p_cons 4.551000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VCAN.34_10247_10000_0.8527_0.4551_1.png
                gene_name: VCAN
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
UTRN
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.408478e-02	ci left: 3.349839e-01	ci right 3.537069e-01	k: 3443	n:10000
Cons ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
UTRN   10000 perm   3 sec   (3259 perm/sec)   p_kst 4.237000e-01   p_cons 2.363000e-01   p_joint 3.443000e-01

Outputting figure to mutsig2_images.part000000000188/UTRN.18_10598_10000_0.4237_0.2363_0.3443.png
                gene_name: UTRN
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 4 percent done.
VCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
Cons ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
KS ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
VCAM1   10000 perm   2 sec   (4984 perm/sec)   p_kst 2.956000e-01   p_cons 2.378000e-01   p_joint 2.044000e-01

Outputting figure to mutsig2_images.part000000000188/VCAM1.16_2256_10000_0.2956_0.2378_0.2044.png
                gene_name: VCAM1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 6 percent done.
VAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
VAV3   10000 perm   2 sec   (4858 perm/sec)   p_kst 3.570000e-02   p_cons 7.921000e-01   p_joint 1.015000e-01

Joint ci ratio: 1.153940e-01	ci left: 5.139392e-02	ci right 5.773637e-02	k: 1090	n:20000
Cons ci ratio: 1.432577e-02	ci left: 7.834804e-01	ci right 7.948354e-01	k: 15784	n:20000
KS ci ratio: 1.529431e-01	ci left: 2.936331e-02	ci right 3.427405e-02	k: 635	n:20000
VAV3   20000 perm   5 sec   (4432 perm/sec)   p_kst 3.175000e-02   p_cons 7.892000e-01   p_joint 5.450000e-02

Joint ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
Cons ci ratio: 1.171564e-02	ci left: 7.840024e-01	ci right 7.932750e-01	k: 23660	n:30000
KS ci ratio: 1.246089e-01	ci left: 2.994019e-02	ci right 3.395113e-02	k: 957	n:30000
VAV3   30000 perm   7 sec   (4261 perm/sec)   p_kst 3.190000e-02   p_cons 7.886667e-01   p_joint 6.626667e-02

Joint ci ratio: 7.338977e-02	ci left: 6.412651e-02	ci right 6.903664e-02	k: 2662	n:40000
Cons ci ratio: 1.012446e-02	ci left: 7.853457e-01	ci right 7.933623e-01	k: 31575	n:40000
KS ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
VAV3   40000 perm   10 sec   (4143 perm/sec)   p_kst 3.217500e-02   p_cons 7.893750e-01   p_joint 6.655000e-02

Joint ci ratio: 6.528287e-02	ci left: 6.506003e-02	ci right 6.947037e-02	k: 3362	n:50000
Cons ci ratio: 9.047822e-03	ci left: 7.860610e-01	ci right 7.932254e-01	k: 39483	n:50000
KS ci ratio: 9.644949e-02	ci left: 3.043547e-02	ci right 3.353918e-02	k: 1598	n:50000
VAV3   50000 perm   12 sec   (4050 perm/sec)   p_kst 3.196000e-02   p_cons 7.896600e-01   p_joint 6.724000e-02

Outputting figure to mutsig2_images.part000000000188/VAV3.14_2677_50000_0.03196_0.78966_0.06724.png
                gene_name: VAV3
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 8 percent done.
USP9X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
Cons ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
USP9X   10000 perm   3 sec   (3770 perm/sec)   p_kst 4.570000e-01   p_cons 7.010000e-02   p_joint 1.549000e-01

Joint ci ratio: 5.172485e-02	ci left: 2.172962e-01	ci right 2.288844e-01	k: 4461	n:20000
Cons ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
KS ci ratio: 2.990623e-02	ci left: 4.551214e-01	ci right 4.689896e-01	k: 9241	n:20000
USP9X   20000 perm   6 sec   (3467 perm/sec)   p_kst 4.620500e-01   p_cons 7.835000e-02   p_joint 2.230500e-01

Outputting figure to mutsig2_images.part000000000188/USP9X.13_7889_20000_0.46205_0.07835_0.22305.png
                gene_name: USP9X
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 9 percent done.
VEGFC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
Cons ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KS ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
VEGFC   10000 perm   2 sec   (5095 perm/sec)   p_kst 2.370000e-02   p_cons 7.914000e-01   p_joint 5.180000e-02

Joint ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
Cons ci ratio: 1.448061e-02	ci left: 7.798459e-01	ci right 7.912710e-01	k: 15712	n:20000
KS ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
VEGFC   20000 perm   4 sec   (4650 perm/sec)   p_kst 2.245000e-02   p_cons 7.856000e-01   p_joint 5.305000e-02

Joint ci ratio: 1.031441e-01	ci left: 4.355936e-02	ci right 4.832908e-02	k: 1377	n:30000
Cons ci ratio: 1.202664e-02	ci left: 7.750673e-01	ci right 7.844785e-01	k: 23394	n:30000
KS ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
VEGFC   30000 perm   7 sec   (4473 perm/sec)   p_kst 2.323333e-02   p_cons 7.798000e-01   p_joint 4.590000e-02

Joint ci ratio: 9.021275e-02	ci left: 4.303797e-02	ci right 4.712840e-02	k: 1802	n:40000
Cons ci ratio: 1.041157e-02	ci left: 7.758322e-01	ci right 7.839771e-01	k: 31197	n:40000
KS ci ratio: 1.264814e-01	ci left: 2.196496e-02	ci right 2.495477e-02	k: 937	n:40000
VEGFC   40000 perm   9 sec   (4362 perm/sec)   p_kst 2.342500e-02   p_cons 7.799250e-01   p_joint 4.505000e-02

Joint ci ratio: 7.867643e-02	ci left: 4.543602e-02	ci right 4.917676e-02	k: 2364	n:50000
Cons ci ratio: 9.270198e-03	ci left: 7.778316e-01	ci right 7.850957e-01	k: 39074	n:50000
KS ci ratio: 1.132524e-01	ci left: 2.207324e-02	ci right 2.474249e-02	k: 1169	n:50000
VEGFC   50000 perm   12 sec   (4267 perm/sec)   p_kst 2.338000e-02   p_cons 7.814800e-01   p_joint 4.728000e-02

Joint ci ratio: 6.924764e-02	ci left: 4.894163e-02	ci right 5.246866e-02	k: 3041	n:60000
Cons ci ratio: 8.488417e-03	ci left: 7.770992e-01	ci right 7.837403e-01	k: 46826	n:60000
KS ci ratio: 1.026389e-01	ci left: 2.251386e-02	ci right 2.496584e-02	k: 1423	n:60000
VEGFC   60000 perm   14 sec   (4182 perm/sec)   p_kst 2.371667e-02   p_cons 7.804333e-01   p_joint 5.068333e-02

Joint ci ratio: 6.269088e-02	ci left: 5.123919e-02	ci right 5.456942e-02	k: 3702	n:70000
Cons ci ratio: 7.855906e-03	ci left: 7.774725e-01	ci right 7.836185e-01	k: 54639	n:70000
KS ci ratio: 9.483052e-02	ci left: 2.269742e-02	ci right 2.497086e-02	k: 1667	n:70000
VEGFC   70000 perm   17 sec   (4105 perm/sec)   p_kst 2.381429e-02   p_cons 7.805571e-01   p_joint 5.288571e-02

Outputting figure to mutsig2_images.part000000000188/VEGFC.11_1291_70000_0.023814_0.78056_0.052886.png
                gene_name: VEGFC
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 11 percent done.
USP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
Cons ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KS ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
USP6   10000 perm   3 sec   (3448 perm/sec)   p_kst 4.043000e-01   p_cons 6.309000e-01   p_joint 5.840000e-01

Outputting figure to mutsig2_images.part000000000188/USP6.10_4337_10000_0.4043_0.6309_0.584.png
                gene_name: USP6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 13 percent done.
USP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 4.162025e-02	ci left: 4.601778e-01	ci right 4.798397e-01	k: 4700	n:10000
USP54   10000 perm   2 sec   (4637 perm/sec)   p_kst 4.700000e-01   p_cons 5.358000e-01   p_joint 7.125000e-01

Outputting figure to mutsig2_images.part000000000188/USP54.9_5143_10000_0.47_0.5358_0.7125.png
                gene_name: USP54
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 15 percent done.
USP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
Cons ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
KS ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
USP7   10000 perm   2 sec   (4702 perm/sec)   p_kst 6.330000e-02   p_cons 2.599000e-01   p_joint 7.490000e-02

Joint ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
Cons ci ratio: 4.667146e-02	ci left: 2.546258e-01	ci right 2.668438e-01	k: 5214	n:20000
KS ci ratio: 1.070320e-01	ci left: 5.947650e-02	ci right 6.625128e-02	k: 1256	n:20000
USP7   20000 perm   5 sec   (4314 perm/sec)   p_kst 6.280000e-02   p_cons 2.607000e-01   p_joint 7.870000e-02

Joint ci ratio: 6.770759e-02	ci left: 9.708702e-02	ci right 1.039239e-01	k: 3014	n:30000
Cons ci ratio: 3.819138e-02	ci left: 2.549107e-01	ci right 2.648691e-01	k: 7796	n:30000
KS ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
USP7   30000 perm   7 sec   (4146 perm/sec)   p_kst 6.376667e-02   p_cons 2.598667e-01   p_joint 1.004667e-01

Outputting figure to mutsig2_images.part000000000188/USP7.9_3433_30000_0.063767_0.25987_0.10047.png
                gene_name: USP7
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 17 percent done.
UTP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 1.573964e-02	ci left: 8.542685e-01	ci right 8.679204e-01	k: 8612	n:10000
UTP20   10000 perm   3 sec   (3813 perm/sec)   p_kst 8.612000e-01   p_cons 2.046000e-01   p_joint 5.690000e-01

Outputting figure to mutsig2_images.part000000000188/UTP20.8_8606_10000_0.8612_0.2046_0.569.png
                gene_name: UTP20
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
VANGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
KS ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
VANGL2   10000 perm   2 sec   (5247 perm/sec)   p_kst 9.410000e-01   p_cons 5.790000e-02   p_joint 2.153000e-01

Joint ci ratio: 5.461002e-02	ci left: 1.992253e-01	ci right 2.104606e-01	k: 4096	n:20000
Cons ci ratio: 1.126358e-01	ci left: 5.387513e-02	ci right 6.035438e-02	k: 1141	n:20000
KS ci ratio: 7.550969e-03	ci left: 9.273481e-01	ci right 9.344260e-01	k: 18619	n:20000
VANGL2   20000 perm   4 sec   (4761 perm/sec)   p_kst 9.309500e-01   p_cons 5.705000e-02   p_joint 2.048000e-01

Joint ci ratio: 4.619947e-02	ci left: 1.890429e-01	ci right 1.980165e-01	k: 5805	n:30000
Cons ci ratio: 9.280342e-02	ci left: 5.352247e-02	ci right 5.876390e-02	k: 1683	n:30000
KS ci ratio: 6.122362e-03	ci left: 9.289227e-01	ci right 9.346600e-01	k: 27955	n:30000
VANGL2   30000 perm   7 sec   (4588 perm/sec)   p_kst 9.318333e-01   p_cons 5.610000e-02   p_joint 1.935000e-01

Outputting figure to mutsig2_images.part000000000188/VANGL2.8_1594_30000_0.93183_0.0561_0.1935.png
                gene_name: VANGL2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 21 percent done.
VARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
VARS2   10000 perm   2 sec   (5244 perm/sec)   p_kst 1.759000e-01   p_cons 2.210000e-02   p_joint 1.291000e-01

Joint ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
Cons ci ratio: 1.668701e-01	ci left: 2.460579e-02	ci right 2.913318e-02	k: 536	n:20000
KS ci ratio: 6.031868e-02	ci left: 1.690650e-01	ci right 1.796299e-01	k: 3486	n:20000
VARS2   20000 perm   4 sec   (4731 perm/sec)   p_kst 1.743000e-01   p_cons 2.680000e-02   p_joint 9.840000e-02

Joint ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
Cons ci ratio: 1.410463e-01	ci left: 2.332713e-02	ci right 2.689898e-02	k: 752	n:30000
KS ci ratio: 4.936171e-02	ci left: 1.693950e-01	ci right 1.780016e-01	k: 5210	n:30000
VARS2   30000 perm   7 sec   (4528 perm/sec)   p_kst 1.736667e-01   p_cons 2.506667e-02   p_joint 6.243333e-02

Joint ci ratio: 7.447418e-02	ci left: 6.235758e-02	ci right 6.720584e-02	k: 2590	n:40000
Cons ci ratio: 1.215308e-01	ci left: 2.380738e-02	ci right 2.691205e-02	k: 1013	n:40000
KS ci ratio: 4.267058e-02	ci left: 1.704944e-01	ci right 1.779530e-01	k: 6968	n:40000
VARS2   40000 perm   9 sec   (4394 perm/sec)   p_kst 1.742000e-01   p_cons 2.532500e-02   p_joint 6.475000e-02

Joint ci ratio: 7.979847e-02	ci left: 4.419984e-02	ci right 4.789310e-02	k: 2301	n:50000
Cons ci ratio: 1.086787e-01	ci left: 2.398011e-02	ci right 2.675537e-02	k: 1267	n:50000
KS ci ratio: 3.802644e-02	ci left: 1.719365e-01	ci right 1.786213e-01	k: 8763	n:50000
VARS2   50000 perm   12 sec   (4295 perm/sec)   p_kst 1.752600e-01   p_cons 2.534000e-02   p_joint 4.602000e-02

Joint ci ratio: 6.970749e-02	ci left: 4.831875e-02	ci right 5.182494e-02	k: 3003	n:60000
Cons ci ratio: 9.922986e-02	ci left: 2.409068e-02	ci right 2.662218e-02	k: 1520	n:60000
KS ci ratio: 3.462109e-02	ci left: 1.729934e-01	ci right 1.791047e-01	k: 10562	n:60000
VARS2   60000 perm   14 sec   (4210 perm/sec)   p_kst 1.760333e-01   p_cons 2.533333e-02   p_joint 5.005000e-02

Outputting figure to mutsig2_images.part000000000188/VARS2.8_3402_60000_0.17603_0.025333_0.05005.png
                gene_name: VARS2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 23 percent done.
USP47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
USP47   10000 perm   2 sec   (4827 perm/sec)   p_kst 3.945000e-01   p_cons 2.275000e-01   p_joint 4.734000e-01

Outputting figure to mutsig2_images.part000000000188/USP47.7_3972_10000_0.3945_0.2275_0.4734.png
                gene_name: USP47
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 25 percent done.
USP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
Cons ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
KS ci ratio: 8.566287e-03	ci left: 9.502311e-01	ci right 9.585016e-01	k: 9545	n:10000
USP8   10000 perm   2 sec   (5089 perm/sec)   p_kst 9.545000e-01   p_cons 1.300000e-02   p_joint 6.020000e-02

Joint ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
Cons ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
KS ci ratio: 4.424291e-03	ci left: 9.729494e-01	ci right 9.773110e-01	k: 19504	n:20000
USP8   20000 perm   4 sec   (4621 perm/sec)   p_kst 9.752000e-01   p_cons 1.380000e-02   p_joint 7.545000e-02

Joint ci ratio: 7.488169e-02	ci left: 8.055721e-02	ci right 8.685702e-02	k: 2510	n:30000
Cons ci ratio: 1.867970e-01	ci left: 1.311422e-02	ci right 1.584766e-02	k: 433	n:30000
KS ci ratio: 3.655819e-03	ci left: 9.727563e-01	ci right 9.763510e-01	k: 29238	n:30000
USP8   30000 perm   7 sec   (4434 perm/sec)   p_kst 9.746000e-01   p_cons 1.443333e-02   p_joint 8.366667e-02

Joint ci ratio: 6.656795e-02	ci left: 7.711325e-02	ci right 8.244795e-02	k: 3190	n:40000
Cons ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
KS ci ratio: 3.167163e-03	ci left: 9.729850e-01	ci right 9.760956e-01	k: 38983	n:40000
USP8   40000 perm   9 sec   (4313 perm/sec)   p_kst 9.745750e-01   p_cons 1.392500e-02   p_joint 7.975000e-02

Joint ci ratio: 5.501475e-02	ci left: 8.963837e-02	ci right 9.472909e-02	k: 4608	n:50000
Cons ci ratio: 1.472265e-01	ci left: 1.294991e-02	ci right 1.502708e-02	k: 698	n:50000
KS ci ratio: 2.878757e-03	ci left: 9.723211e-01	ci right 9.751435e-01	k: 48688	n:50000
USP8   50000 perm   12 sec   (4220 perm/sec)   p_kst 9.737600e-01   p_cons 1.396000e-02   p_joint 9.216000e-02

Joint ci ratio: 6.155236e-02	ci left: 6.136444e-02	ci right 6.527793e-02	k: 3798	n:60000
Cons ci ratio: 1.343017e-01	ci left: 1.305901e-02	ci right 1.495509e-02	k: 839	n:60000
KS ci ratio: 2.725186e-03	ci left: 9.704781e-01	ci right 9.731426e-01	k: 58310	n:60000
USP8   60000 perm   15 sec   (4130 perm/sec)   p_kst 9.718333e-01   p_cons 1.398333e-02   p_joint 6.330000e-02

Joint ci ratio: 5.411106e-02	ci left: 6.785256e-02	ci right 7.164034e-02	k: 4881	n:70000
Cons ci ratio: 1.270626e-01	ci left: 1.256130e-02	ci right 1.427938e-02	k: 938	n:70000
KS ci ratio: 2.501360e-03	ci left: 9.710574e-01	ci right 9.735033e-01	k: 68061	n:70000
USP8   70000 perm   17 sec   (4052 perm/sec)   p_kst 9.723000e-01   p_cons 1.340000e-02   p_joint 6.972857e-02

Joint ci ratio: 3.469457e-02	ci left: 1.352198e-01	ci right 1.400065e-01	k: 11008	n:80000
Cons ci ratio: 1.084286e-01	ci left: 1.520268e-02	ci right 1.695767e-02	k: 1285	n:80000
KS ci ratio: 2.400373e-03	ci left: 9.696990e-01	ci right 9.720417e-01	k: 77671	n:80000
USP8   80000 perm   20 sec   (3987 perm/sec)   p_kst 9.708875e-01   p_cons 1.606250e-02   p_joint 1.376000e-01

Joint ci ratio: 3.465203e-02	ci left: 1.223276e-01	ci right 1.266522e-01	k: 11203	n:90000
Cons ci ratio: 1.023625e-01	ci left: 1.521198e-02	ci right 1.686387e-02	k: 1442	n:90000
KS ci ratio: 2.254527e-03	ci left: 9.699847e-01	ci right 9.721848e-01	k: 87399	n:90000
USP8   90000 perm   23 sec   (3918 perm/sec)   p_kst 9.711000e-01   p_cons 1.602222e-02   p_joint 1.244778e-01

Joint ci ratio: 4.206001e-02	ci left: 7.823660e-02	ci right 8.160781e-02	k: 7991	n:100000
Cons ci ratio: 1.031003e-01	ci left: 1.351479e-02	ci right 1.499358e-02	k: 1424	n:100000
KS ci ratio: 2.134602e-03	ci left: 9.701548e-01	ci right 9.722377e-01	k: 97121	n:100000
USP8   100000 perm   26 sec   (3852 perm/sec)   p_kst 9.712100e-01   p_cons 1.424000e-02   p_joint 7.991000e-02

Joint ci ratio: 3.415598e-02	ci left: 1.051069e-01	ci right 1.087684e-01	k: 11762	n:110000
Cons ci ratio: 9.889603e-02	ci left: 1.338493e-02	ci right 1.478632e-02	k: 1548	n:110000
KS ci ratio: 2.022998e-03	ci left: 9.705458e-01	ci right 9.725201e-01	k: 106870	n:110000
USP8   110000 perm   29 sec   (3789 perm/sec)   p_kst 9.715455e-01   p_cons 1.407273e-02   p_joint 1.069273e-01

Outputting figure to mutsig2_images.part000000000188/USP8.7_3433_110000_0.97155_0.014073_0.10693.png
                gene_name: USP8
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 26 percent done.
VCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
VCP   10000 perm   2 sec   (5339 perm/sec)   p_kst 2.742000e-01   p_cons 1.581000e-01   p_joint 2.726000e-01

Outputting figure to mutsig2_images.part000000000188/VCP.7_2489_10000_0.2742_0.1581_0.2726.png
                gene_name: VCP
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 28 percent done.
USPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
Cons ci ratio: 3.735622e-02	ci left: 5.141557e-01	ci right 5.338303e-01	k: 5240	n:10000
KS ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
USPL1   10000 perm   2 sec   (5362 perm/sec)   p_kst 2.157000e-01   p_cons 5.240000e-01   p_joint 5.164000e-01

Outputting figure to mutsig2_images.part000000000188/USPL1.6_3311_10000_0.2157_0.524_0.5164.png
                gene_name: USPL1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 30 percent done.
UTP14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
KS ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
UTP14A   10000 perm   2 sec   (5491 perm/sec)   p_kst 7.971000e-01   p_cons 9.094000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTP14A.6_2376_10000_0.7971_0.9094_1.png
                gene_name: UTP14A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
UTP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
Cons ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
KS ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
UTP6   10000 perm   2 sec   (5555 perm/sec)   p_kst 4.934000e-01   p_cons 3.425000e-01   p_joint 4.747000e-01

Outputting figure to mutsig2_images.part000000000188/UTP6.6_1870_10000_0.4934_0.3425_0.4747.png
                gene_name: UTP6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 34 percent done.
UVRAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
UVRAG   10000 perm   2 sec   (5628 perm/sec)   p_kst 2.628000e-01   p_cons 1.078000e-01   p_joint 6.310000e-02

Joint ci ratio: 7.084650e-02	ci left: 1.280270e-01	ci right 1.374801e-01	k: 2654	n:20000
Cons ci ratio: 7.657341e-02	ci left: 1.113964e-01	ci right 1.203156e-01	k: 2316	n:20000
KS ci ratio: 4.789466e-02	ci left: 2.448536e-01	ci right 2.569189e-01	k: 5017	n:20000
UVRAG   20000 perm   4 sec   (5083 perm/sec)   p_kst 2.508500e-01   p_cons 1.158000e-01   p_joint 1.327000e-01

Outputting figure to mutsig2_images.part000000000188/UVRAG.6_2160_20000_0.25085_0.1158_0.1327.png
                gene_name: UVRAG
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 36 percent done.
VARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
Cons ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
KS ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
VARS   10000 perm   2 sec   (4841 perm/sec)   p_kst 2.582000e-01   p_cons 7.620000e-02   p_joint 1.320000e-01

Joint ci ratio: 5.174724e-02	ci left: 2.171476e-01	ci right 2.287331e-01	k: 4458	n:20000
Cons ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
KS ci ratio: 4.725352e-02	ci left: 2.499128e-01	ci right 2.620582e-01	k: 5119	n:20000
VARS   20000 perm   5 sec   (4434 perm/sec)   p_kst 2.559500e-01   p_cons 7.515000e-02   p_joint 2.229000e-01

Outputting figure to mutsig2_images.part000000000188/VARS.6_3911_20000_0.25595_0.07515_0.2229.png
                gene_name: VARS
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 38 percent done.
USP48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.877030e-02	ci left: 8.057249e-01	ci right 8.210921e-01	k: 8135	n:10000
Cons ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
KS ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
USP48   10000 perm   2 sec   (5724 perm/sec)   p_kst 6.648000e-01   p_cons 7.671000e-01   p_joint 8.135000e-01

Outputting figure to mutsig2_images.part000000000188/USP48.5_3224_10000_0.6648_0.7671_0.8135.png
                gene_name: USP48
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 40 percent done.
USP51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
Cons ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
USP51   10000 perm   2 sec   (6085 perm/sec)   p_kst 2.845000e-01   p_cons 5.324000e-01   p_joint 4.912000e-01

Outputting figure to mutsig2_images.part000000000188/USP51.5_2140_10000_0.2845_0.5324_0.4912.png
                gene_name: USP51
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 42 percent done.
USP6NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
Cons ci ratio: 8.633875e-02	ci left: 1.634706e-01	ci right 1.783216e-01	k: 1708	n:10000
KS ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
USP6NL   10000 perm   2 sec   (5390 perm/sec)   p_kst 3.729000e-01   p_cons 1.708000e-01   p_joint 2.923000e-01

Outputting figure to mutsig2_images.part000000000188/USP6NL.5_2602_10000_0.3729_0.1708_0.2923.png
                gene_name: USP6NL
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
UTP14C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
Cons ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
UTP14C   10000 perm   2 sec   (5357 perm/sec)   p_kst 7.469000e-01   p_cons 6.915000e-01   p_joint 8.416000e-01

Outputting figure to mutsig2_images.part000000000188/UTP14C.5_2305_10000_0.7469_0.6915_0.8416.png
                gene_name: UTP14C
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
VAC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.090944e-02	ci left: 1.823522e-01	ci right 1.978288e-01	k: 1900	n:10000
Cons ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
KS ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
VAC14   10000 perm   2 sec   (5642 perm/sec)   p_kst 6.810000e-01   p_cons 2.580000e-02   p_joint 1.900000e-01

Joint ci ratio: 5.385059e-02	ci left: 2.037786e-01	ci right 2.151060e-01	k: 4188	n:20000
Cons ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
KS ci ratio: 1.968384e-02	ci left: 6.581589e-01	ci right 6.712932e-01	k: 13295	n:20000
VAC14   20000 perm   4 sec   (5080 perm/sec)   p_kst 6.647500e-01   p_cons 2.635000e-02   p_joint 2.094000e-01

Joint ci ratio: 4.833229e-02	ci left: 1.754690e-01	ci right 1.841931e-01	k: 5394	n:30000
Cons ci ratio: 1.430065e-01	ci left: 2.268361e-02	ci right 2.620931e-02	k: 732	n:30000
KS ci ratio: 1.622427e-02	ci left: 6.551429e-01	ci right 6.658926e-01	k: 19816	n:30000
VAC14   30000 perm   6 sec   (4834 perm/sec)   p_kst 6.605333e-01   p_cons 2.440000e-02   p_joint 1.798000e-01

Joint ci ratio: 3.990245e-02	ci left: 1.904820e-01	ci right 1.982624e-01	k: 7774	n:40000
Cons ci ratio: 1.239344e-01	ci left: 2.288587e-02	ci right 2.593371e-02	k: 975	n:40000
KS ci ratio: 1.400793e-02	ci left: 6.572399e-01	ci right 6.665365e-01	k: 26476	n:40000
VAC14   40000 perm   9 sec   (4688 perm/sec)   p_kst 6.619000e-01   p_cons 2.437500e-02   p_joint 1.943500e-01

Joint ci ratio: 3.767251e-02	ci left: 1.746361e-01	ci right 1.813613e-01	k: 8899	n:50000
Cons ci ratio: 1.254291e-01	ci left: 1.795699e-02	ci right 2.037929e-02	k: 957	n:50000
KS ci ratio: 1.277013e-02	ci left: 6.491297e-01	ci right 6.574925e-01	k: 32666	n:50000
VAC14   50000 perm   11 sec   (4567 perm/sec)   p_kst 6.533200e-01   p_cons 1.914000e-02   p_joint 1.779800e-01

Joint ci ratio: 3.656382e-02	ci left: 1.578192e-01	ci right 1.637137e-01	k: 9645	n:60000
Cons ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
KS ci ratio: 1.164002e-02	ci left: 6.501780e-01	ci right 6.578071e-01	k: 39240	n:60000
VAC14   60000 perm   13 sec   (4458 perm/sec)   p_kst 6.540000e-01   p_cons 1.941667e-02   p_joint 1.607500e-01

Joint ci ratio: 3.317370e-02	ci left: 1.635342e-01	ci right 1.690649e-01	k: 11640	n:70000
Cons ci ratio: 1.038263e-01	ci left: 1.891999e-02	ci right 2.100579e-02	k: 1396	n:70000
KS ci ratio: 1.075686e-02	ci left: 6.512931e-01	ci right 6.583512e-01	k: 45838	n:70000
VAC14   70000 perm   16 sec   (4363 perm/sec)   p_kst 6.548286e-01   p_cons 1.994286e-02   p_joint 1.662857e-01

Joint ci ratio: 3.077899e-02	ci left: 1.659741e-01	ci right 1.711749e-01	k: 13485	n:80000
Cons ci ratio: 9.640146e-02	ci left: 1.927292e-02	ci right 2.123709e-02	k: 1619	n:80000
KS ci ratio: 1.007780e-02	ci left: 6.508172e-01	ci right 6.574217e-01	k: 52330	n:80000
VAC14   80000 perm   19 sec   (4281 perm/sec)   p_kst 6.541250e-01   p_cons 2.023750e-02   p_joint 1.685625e-01

Outputting figure to mutsig2_images.part000000000188/VAC14.5_2425_80000_0.65412_0.020237_0.16856.png
                gene_name: VAC14
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 47 percent done.
VGLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.111089e-02	ci left: 9.203848e-01	ci right 9.307656e-01	k: 9257	n:10000
KS ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
VGLL3   10000 perm   2 sec   (5933 perm/sec)   p_kst 8.718000e-01   p_cons 9.257000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VGLL3.5_997_10000_0.8718_0.9257_1.png
                gene_name: VGLL3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
USP44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 3.308762e-02	ci left: 5.741659e-01	ci right 5.935853e-01	k: 5839	n:10000
USP44   10000 perm   2 sec   (5831 perm/sec)   p_kst 5.839000e-01   p_cons 6.160000e-02   p_joint 1.540000e-01

Joint ci ratio: 6.312323e-02	ci left: 1.565232e-01	ci right 1.667754e-01	k: 3232	n:20000
Cons ci ratio: 1.056925e-01	ci left: 6.093909e-02	ci right 6.778824e-02	k: 1286	n:20000
KS ci ratio: 2.432748e-02	ci left: 5.579450e-01	ci right 5.717361e-01	k: 11297	n:20000
USP44   20000 perm   4 sec   (5261 perm/sec)   p_kst 5.648500e-01   p_cons 6.430000e-02   p_joint 1.616000e-01

Joint ci ratio: 5.987828e-02	ci left: 1.212445e-01	ci right 1.287616e-01	k: 3749	n:30000
Cons ci ratio: 8.735481e-02	ci left: 6.014581e-02	ci right 6.567254e-02	k: 1886	n:30000
KS ci ratio: 1.989538e-02	ci left: 5.584327e-01	ci right 5.696882e-01	k: 16922	n:30000
USP44   30000 perm   6 sec   (5023 perm/sec)   p_kst 5.640667e-01   p_cons 6.286667e-02   p_joint 1.249667e-01

Outputting figure to mutsig2_images.part000000000188/USP44.4_2159_30000_0.56407_0.062867_0.12497.png
                gene_name: USP44
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
UXS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
Cons ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
KS ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
UXS1   10000 perm   2 sec   (5983 perm/sec)   p_kst 5.877000e-01   p_cons 1.605000e-01   p_joint 4.790000e-01

Outputting figure to mutsig2_images.part000000000188/UXS1.4_1323_10000_0.5877_0.1605_0.479.png
                gene_name: UXS1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 53 percent done.
VAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
VAX1   10000 perm   2 sec   (6456 perm/sec)   p_kst 4.250000e-02   p_cons 6.200000e-01   p_joint 7.920000e-02

Joint ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
Cons ci ratio: 2.183304e-02	ci left: 6.103216e-01	ci right 6.238444e-01	k: 12342	n:20000
KS ci ratio: 1.326265e-01	ci left: 3.906816e-02	ci right 4.466603e-02	k: 836	n:20000
VAX1   20000 perm   4 sec   (5459 perm/sec)   p_kst 4.180000e-02   p_cons 6.171000e-01   p_joint 9.860000e-02

Joint ci ratio: 6.549563e-02	ci left: 1.031623e-01	ci right 1.101808e-01	k: 3199	n:30000
Cons ci ratio: 1.776911e-02	ci left: 6.131090e-01	ci right 6.241347e-01	k: 18559	n:30000
KS ci ratio: 1.084930e-01	ci left: 3.943328e-02	ci right 4.398935e-02	k: 1250	n:30000
VAX1   30000 perm   6 sec   (5345 perm/sec)   p_kst 4.166667e-02   p_cons 6.186333e-01   p_joint 1.066333e-01

Joint ci ratio: 6.127239e-02	ci left: 8.997369e-02	ci right 9.568558e-02	k: 3712	n:40000
Cons ci ratio: 1.575154e-02	ci left: 6.027697e-01	ci right 6.123647e-01	k: 24303	n:40000
KS ci ratio: 9.155011e-02	ci left: 4.181515e-02	ci right 4.585141e-02	k: 1752	n:40000
VAX1   40000 perm   8 sec   (5203 perm/sec)   p_kst 4.380000e-02   p_cons 6.075750e-01   p_joint 9.280000e-02

Outputting figure to mutsig2_images.part000000000188/VAX1.4_1157_40000_0.0438_0.60757_0.0928.png
                gene_name: VAX1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 55 percent done.
VENTX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
Cons ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
KS ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
VENTX   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.758000e-01   p_cons 8.240000e-01   p_joint 7.728000e-01

Outputting figure to mutsig2_images.part000000000188/VENTX.4_789_10000_0.5758_0.824_0.7728.png
                gene_name: VENTX
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 57 percent done.
VEPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
VEPH1   10000 perm   2 sec   (5419 perm/sec)   p_kst 6.405000e-01   p_cons 3.332000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000188/VEPH1.4_2676_10000_0.6405_0.3332_0.7677.png
                gene_name: VEPH1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 58 percent done.
VEZT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
Cons ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
VEZT   10000 perm   2 sec   (5910 perm/sec)   p_kst 1.835000e-01   p_cons 1.942000e-01   p_joint 2.025000e-01

Outputting figure to mutsig2_images.part000000000188/VEZT.4_2388_10000_0.1835_0.1942_0.2025.png
                gene_name: VEZT
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
VGLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
Cons ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
KS ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
VGLL1   10000 perm   2 sec   (6372 perm/sec)   p_kst 6.721000e-01   p_cons 4.510000e-01   p_joint 7.296000e-01

Outputting figure to mutsig2_images.part000000000188/VGLL1.4_793_10000_0.6721_0.451_0.7296.png
                gene_name: VGLL1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 62 percent done.
USP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
Cons ci ratio: 5.595672e-02	ci left: 3.198913e-01	ci right 3.384084e-01	k: 3291	n:10000
KS ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
USP5   10000 perm   2 sec   (5738 perm/sec)   p_kst 2.499000e-01   p_cons 3.291000e-01   p_joint 3.471000e-01

Outputting figure to mutsig2_images.part000000000188/USP5.3_2657_10000_0.2499_0.3291_0.3471.png
                gene_name: USP5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 64 percent done.
USP50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
Cons ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KS ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
USP50   10000 perm   2 sec   (6456 perm/sec)   p_kst 2.731000e-01   p_cons 1.952000e-01   p_joint 2.307000e-01

Outputting figure to mutsig2_images.part000000000188/USP50.3_1033_10000_0.2731_0.1952_0.2307.png
                gene_name: USP50
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 66 percent done.
USP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.383810e-03	ci left: 9.908300e-01	ci right 9.942737e-01	k: 9927	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
USP53   10000 perm   2 sec   (5666 perm/sec)   p_kst 5.741000e-01   p_cons 9.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP53.3_3282_10000_0.5741_0.9927_1.png
                gene_name: USP53
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
UTP23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
UTP23   10000 perm   2 sec   (6600 perm/sec)   p_kst 2.344000e-01   p_cons 3.087000e-01   p_joint 2.643000e-01

Outputting figure to mutsig2_images.part000000000188/UTP23.3_762_10000_0.2344_0.3087_0.2643.png
                gene_name: UTP23
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 70 percent done.
UTS2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
UTS2D   10000 perm   1 sec   (6819 perm/sec)   p_kst 1.960000e-02   p_cons 4.826000e-01   p_joint 5.160000e-02

Joint ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
Cons ci ratio: 2.850081e-02	ci left: 4.791006e-01	ci right 4.930034e-01	k: 9721	n:20000
KS ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
UTS2D   20000 perm   3 sec   (6073 perm/sec)   p_kst 2.005000e-02   p_cons 4.860500e-01   p_joint 6.520000e-02

Joint ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
Cons ci ratio: 2.320708e-02	ci left: 4.817620e-01	ci right 4.931071e-01	k: 14623	n:30000
KS ci ratio: 1.640943e-01	ci left: 1.713322e-02	ci right 2.022766e-02	k: 559	n:30000
UTS2D   30000 perm   5 sec   (5770 perm/sec)   p_kst 1.863333e-02   p_cons 4.874333e-01   p_joint 4.373333e-02

Joint ci ratio: 9.277446e-02	ci left: 4.073943e-02	ci right 4.472729e-02	k: 1708	n:40000
Cons ci ratio: 2.008545e-02	ci left: 4.828401e-01	ci right 4.926617e-01	k: 19510	n:40000
KS ci ratio: 1.400846e-01	ci left: 1.785355e-02	ci right 2.056689e-02	k: 767	n:40000
UTS2D   40000 perm   7 sec   (5433 perm/sec)   p_kst 1.917500e-02   p_cons 4.877500e-01   p_joint 4.270000e-02

Joint ci ratio: 9.332926e-02	ci left: 3.248723e-02	ci right 3.568716e-02	k: 1703	n:50000
Cons ci ratio: 1.881024e-02	ci left: 4.604404e-01	ci right 4.692037e-01	k: 23241	n:50000
KS ci ratio: 1.248326e-01	ci left: 1.813146e-02	ci right 2.056480e-02	k: 966	n:50000
UTS2D   50000 perm   10 sec   (5082 perm/sec)   p_kst 1.932000e-02   p_cons 4.648200e-01   p_joint 3.406000e-02

Joint ci ratio: 8.040991e-02	ci left: 3.656591e-02	ci right 3.964564e-02	k: 2285	n:60000
Cons ci ratio: 1.717038e-02	ci left: 4.608526e-01	ci right 4.688508e-01	k: 27891	n:60000
KS ci ratio: 1.149398e-01	ci left: 1.792257e-02	ci right 2.012430e-02	k: 1140	n:60000
UTS2D   60000 perm   12 sec   (5015 perm/sec)   p_kst 1.900000e-02   p_cons 4.648500e-01   p_joint 3.808333e-02

Joint ci ratio: 8.361383e-02	ci left: 2.916850e-02	ci right 3.172776e-02	k: 2130	n:70000
Cons ci ratio: 1.585368e-02	ci left: 4.624988e-01	ci right 4.699040e-01	k: 32634	n:70000
KS ci ratio: 1.065839e-01	ci left: 1.794581e-02	ci right 1.998005e-02	k: 1326	n:70000
UTS2D   70000 perm   14 sec   (4949 perm/sec)   p_kst 1.894286e-02   p_cons 4.662000e-01   p_joint 3.042857e-02

Joint ci ratio: 7.170470e-02	ci left: 3.471970e-02	ci right 3.731409e-02	k: 2880	n:80000
Cons ci ratio: 1.482571e-02	ci left: 4.628756e-01	ci right 4.698018e-01	k: 37307	n:80000
KS ci ratio: 9.995483e-02	ci left: 1.791885e-02	ci right 1.981627e-02	k: 1508	n:80000
UTS2D   80000 perm   16 sec   (4886 perm/sec)   p_kst 1.885000e-02   p_cons 4.663375e-01   p_joint 3.600000e-02

Outputting figure to mutsig2_images.part000000000188/UTS2D.3_380_80000_0.01885_0.46634_0.036.png
                gene_name: UTS2D
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 72 percent done.
VANGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
VANGL1   10000 perm   2 sec   (6177 perm/sec)   p_kst 6.751000e-01   p_cons 4.900000e-02   p_joint 1.350000e-01

Joint ci ratio: 4.437134e-02	ci left: 2.744301e-01	ci right 2.869337e-01	k: 5613	n:20000
Cons ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
KS ci ratio: 1.859385e-02	ci left: 6.831861e-01	ci right 6.960588e-01	k: 13793	n:20000
VANGL1   20000 perm   4 sec   (5521 perm/sec)   p_kst 6.896500e-01   p_cons 4.920000e-02   p_joint 2.806500e-01

Joint ci ratio: 4.695806e-02	ci left: 1.840549e-01	ci right 1.929389e-01	k: 5654	n:30000
Cons ci ratio: 1.065523e-01	ci left: 4.086211e-02	ci right 4.549355e-02	k: 1294	n:30000
KS ci ratio: 1.519083e-02	ci left: 6.841289e-01	ci right 6.946344e-01	k: 20682	n:30000
VANGL1   30000 perm   6 sec   (5259 perm/sec)   p_kst 6.894000e-01   p_cons 4.313333e-02   p_joint 1.884667e-01

Joint ci ratio: 3.391866e-02	ci left: 2.460606e-01	ci right 2.545757e-01	k: 10012	n:40000
Cons ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
KS ci ratio: 1.309738e-02	ci left: 6.867466e-01	ci right 6.958256e-01	k: 27652	n:40000
VANGL1   40000 perm   8 sec   (4962 perm/sec)   p_kst 6.913000e-01   p_cons 4.280000e-02   p_joint 2.503000e-01

Outputting figure to mutsig2_images.part000000000188/VANGL1.3_1603_40000_0.6913_0.0428_0.2503.png
                gene_name: VANGL1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.25 

Current progress: 74 percent done.
VASP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
VASP   10000 perm   2 sec   (6120 perm/sec)   p_kst 2.150000e-02   p_cons 3.854000e-01   p_joint 1.834000e-01

Joint ci ratio: 6.855648e-02	ci left: 1.356621e-01	ci right 1.453426e-01	k: 2809	n:20000
Cons ci ratio: 3.486375e-02	ci left: 3.804908e-01	ci right 3.940420e-01	k: 7745	n:20000
KS ci ratio: 1.775177e-01	ci left: 2.168415e-02	ci right 2.595584e-02	k: 475	n:20000
VASP   20000 perm   4 sec   (5558 perm/sec)   p_kst 2.375000e-02   p_cons 3.872500e-01   p_joint 1.404500e-01

Joint ci ratio: 7.537415e-02	ci left: 7.957438e-02	ci right 8.584004e-02	k: 2480	n:30000
Cons ci ratio: 2.834251e-02	ci left: 3.838100e-01	ci right 3.948781e-01	k: 11680	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
VASP   30000 perm   6 sec   (5326 perm/sec)   p_kst 2.303333e-02   p_cons 3.893333e-01   p_joint 8.266667e-02

Joint ci ratio: 9.922822e-02	ci left: 3.568374e-02	ci right 3.943378e-02	k: 1501	n:40000
Cons ci ratio: 2.456295e-02	ci left: 3.842181e-01	ci right 3.937981e-01	k: 15560	n:40000
KS ci ratio: 1.353960e-01	ci left: 1.913373e-02	ci right 2.193649e-02	k: 820	n:40000
VASP   40000 perm   8 sec   (5177 perm/sec)   p_kst 2.050000e-02   p_cons 3.890000e-01   p_joint 3.752500e-02

Joint ci ratio: 1.002705e-01	ci left: 2.817084e-02	ci right 3.116409e-02	k: 1482	n:50000
Cons ci ratio: 2.188243e-02	ci left: 3.866194e-01	ci right 3.951932e-01	k: 19545	n:50000
KS ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
VASP   50000 perm   10 sec   (5055 perm/sec)   p_kst 2.046000e-02   p_cons 3.909000e-01   p_joint 2.964000e-02

Joint ci ratio: 7.655718e-02	ci left: 4.026159e-02	ci right 4.348292e-02	k: 2511	n:60000
Cons ci ratio: 1.994942e-02	ci left: 3.876248e-01	ci right 3.954523e-01	k: 23492	n:60000
KS ci ratio: 1.123573e-01	ci left: 1.876505e-02	ci right 2.101506e-02	k: 1192	n:60000
VASP   60000 perm   12 sec   (4945 perm/sec)   p_kst 1.986667e-02   p_cons 3.915333e-01   p_joint 4.185000e-02

Joint ci ratio: 8.063717e-02	ci left: 3.133872e-02	ci right 3.398592e-02	k: 2285	n:70000
Cons ci ratio: 1.846929e-02	ci left: 3.879245e-01	ci right 3.951702e-01	k: 27408	n:70000
KS ci ratio: 1.036372e-01	ci left: 1.898960e-02	ci right 2.107903e-02	k: 1401	n:70000
VASP   70000 perm   14 sec   (4837 perm/sec)   p_kst 2.001429e-02   p_cons 3.915429e-01   p_joint 3.264286e-02

Joint ci ratio: 8.060777e-02	ci left: 2.755390e-02	ci right 2.988045e-02	k: 2296	n:80000
Cons ci ratio: 1.727171e-02	ci left: 3.882903e-01	ci right 3.950676e-01	k: 31334	n:80000
KS ci ratio: 9.729406e-02	ci left: 1.891903e-02	ci right 2.086600e-02	k: 1590	n:80000
VASP   80000 perm   17 sec   (4735 perm/sec)   p_kst 1.987500e-02   p_cons 3.916750e-01   p_joint 2.870000e-02

Outputting figure to mutsig2_images.part000000000188/VASP.3_1195_80000_0.019875_0.39167_0.0287.png
                gene_name: VASP
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 75 percent done.
VAT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
VAT1L   10000 perm   2 sec   (6336 perm/sec)   p_kst 3.295000e-01   p_cons 8.780000e-02   p_joint 4.273000e-01

Joint ci ratio: 3.532355e-02	ci left: 3.743121e-01	ci right 3.878225e-01	k: 7621	n:20000
Cons ci ratio: 8.914826e-02	ci left: 8.420687e-02	ci right 9.211334e-02	k: 1762	n:20000
KS ci ratio: 4.007450e-02	ci left: 3.170673e-01	ci right 3.300840e-01	k: 6471	n:20000
VAT1L   20000 perm   4 sec   (5624 perm/sec)   p_kst 3.235500e-01   p_cons 8.810000e-02   p_joint 3.810500e-01

Outputting figure to mutsig2_images.part000000000188/VAT1L.3_1296_20000_0.32355_0.0881_0.38105.png
                gene_name: VAT1L
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 77 percent done.
VAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
VAV2   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.503000e-01   p_cons 2.208000e-01   p_joint 4.903000e-01

Outputting figure to mutsig2_images.part000000000188/VAV2.3_2757_10000_0.4503_0.2208_0.4903.png
                gene_name: VAV2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 79 percent done.
USP45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
Cons ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
KS ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
USP45   10000 perm   2 sec   (6212 perm/sec)   p_kst 8.999000e-01   p_cons 4.410000e-01   p_joint 9.875000e-01

Outputting figure to mutsig2_images.part000000000188/USP45.2_2513_10000_0.8999_0.441_0.9875.png
                gene_name: USP45
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
USP46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
KS ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
USP46   10000 perm   1 sec   (6886 perm/sec)   p_kst 7.135000e-01   p_cons 8.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP46.2_1156_10000_0.7135_0.816_1.png
                gene_name: USP46
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
USP49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 4.267935e-02	ci left: 4.476992e-01	ci right 4.673255e-01	k: 4575	n:10000
USP49   10000 perm   2 sec   (6653 perm/sec)   p_kst 4.575000e-01   p_cons 6.369000e-01   p_joint 8.945000e-01

Outputting figure to mutsig2_images.part000000000188/USP49.2_1939_10000_0.4575_0.6369_0.8945.png
                gene_name: USP49
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 85 percent done.
USP9Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.754382e-02	ci left: 5.116542e-01	ci right 5.313333e-01	k: 5215	n:10000
Cons ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
KS ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
USP9Y   10000 perm   2 sec   (4364 perm/sec)   p_kst 4.337000e-01   p_cons 1.235000e-01   p_joint 5.215000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
KS ci ratio: 3.143036e-02	ci left: 4.305594e-01	ci right 4.443588e-01	k: 8749	n:20000
USP9Y   20000 perm   5 sec   (3998 perm/sec)   p_kst 4.374500e-01   p_cons 1.224500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP9Y.2_7844_20000_0.43745_0.12245_1.png
                gene_name: USP9Y
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
UTP18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
Cons ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
KS ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
UTP18   10000 perm   2 sec   (6583 perm/sec)   p_kst 4.081000e-01   p_cons 6.172000e-01   p_joint 5.874000e-01

Outputting figure to mutsig2_images.part000000000188/UTP18.2_1723_10000_0.4081_0.6172_0.5874.png
                gene_name: UTP18
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 89 percent done.
UTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
UTS2   10000 perm   1 sec   (7280 perm/sec)   p_kst 5.832000e-01   p_cons 5.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTS2.2_520_10000_0.5832_0.5736_1.png
                gene_name: UTS2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
UTY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
Cons ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
UTY   10000 perm   2 sec   (5348 perm/sec)   p_kst 8.300000e-01   p_cons 5.254000e-01   p_joint 8.727000e-01

Outputting figure to mutsig2_images.part000000000188/UTY.2_4419_10000_0.83_0.5254_0.8727.png
                gene_name: UTY
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 92 percent done.
UXT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
UXT   10000 perm   1 sec   (7120 perm/sec)   p_kst 2.693000e-01   p_cons 2.290000e-01   p_joint 1.525000e-01

Outputting figure to mutsig2_images.part000000000188/UXT.2_534_10000_0.2693_0.229_0.1525.png
                gene_name: UXT
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 94 percent done.
VCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114056e-03	ci left: 9.869754e-01	ci right 9.911324e-01	k: 9892	n:10000
Cons ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
KS ci ratio: 1.411309e-02	ci left: 8.788919e-01	ci right 8.914828e-01	k: 8853	n:10000
VCL   10000 perm   2 sec   (5611 perm/sec)   p_kst 8.853000e-01   p_cons 7.012000e-01   p_joint 9.892000e-01

Outputting figure to mutsig2_images.part000000000188/VCL.2_3493_10000_0.8853_0.7012_0.9892.png
                gene_name: VCL
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
VCPIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
KS ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
VCPIP1   10000 perm   2 sec   (5648 perm/sec)   p_kst 7.584000e-01   p_cons 6.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VCPIP1.2_3681_10000_0.7584_0.6617_1.png
                gene_name: VCPIP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
VEZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
KS ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
VEZF1   10000 perm   1 sec   (6673 perm/sec)   p_kst 1.512000e-01   p_cons 7.110000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000188/VEZF1.2_1590_10000_0.1512_0.711_0.354.png
                gene_name: VEZF1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000188
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 188 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 4422684: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000189> was used as the working directory.
Started at Wed Oct 24 18:10:34 2012
Results reported at Wed Oct 24 18:42:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000189.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000189.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 189  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000189.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1970.11 sec.
    Max Memory :      5164 MB
    Max Swap   :      7909 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
189
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 189
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 189: processing genes 17009 - 17099
Calculating significance of each gene.
Using projection method.
17009	VIL1	8.365823e-01
17010	VILL	9.910144e-01
17011	VIM	7.160052e-01
17012	VIP	3.283167e-01
17013	VIPAR	8.567558e-01
17014	VIPR1	1
17015	VIPR2	5.633440e-01
17016	VIT	9.656862e-01
17017	VKORC1	7.168546e-01
17018	VKORC1L1	1
17019	VLDLR	9.487015e-01
17020	VMA21	1
17021	VMAC	1
17022	VMO1	7.123016e-01
17023	VN1R1	1
17024	VN1R2	7.623723e-05
17025	VN1R4	2.465700e-01
17026	VN1R5	8.083509e-02
17027	VNN1	3.622407e-01
17028	VNN2	8.441437e-01
17029	VOPP1	5.464698e-01
17030	VPRBP	8.316626e-01
17031	VPREB1	2.243624e-01
17032	VPREB3	1
17033	VPS11	9.973578e-01
17034	VPS13A	9.999378e-01
17035	VPS13B	1
17036	VPS13C	5.707728e-01
17037	VPS13D	1
17038	VPS16	5.884353e-01
17039	VPS18	9.398781e-01
17040	VPS24	1
17041	VPS25	1
17042	VPS26A	1
17043	VPS26B	5.447320e-01
17044	VPS28	1.422727e-01
17045	VPS29	1
17046	VPS33A	7.639835e-01
17047	VPS33B	7.599267e-01
17048	VPS35	9.811037e-01
17049	VPS36	7.175779e-01
17050	VPS37A	1
17051	VPS37B	1
17052	VPS37C	6.808637e-01
17053	VPS37D	3.260957e-01
17054	VPS39	9.723863e-01
17055	VPS41	2.571051e-01
17056	VPS45	5.866231e-01
17057	VPS4A	7.908595e-01
17058	VPS4B	3.689753e-01
In gene VPS52 the following bins exceed PROBCAP:
    LUAD-44-2666-TP	categ 6	N = 2250    n = 1	mu =   3.35e-07
17059	VPS52	4.806686e-01
17060	VPS53	8.218510e-01
17061	VPS54	9.959688e-01
17062	VPS72	9.405494e-01
17063	VPS8	9.959785e-01
17064	VRK1	6.722534e-01
17065	VRK2	8.659597e-01
17066	VRK3	4.198539e-01
17067	VSIG1	1.379839e-01
17068	VSIG10	6.710284e-01
17069	VSIG2	8.331582e-01
17070	VSIG4	1
17071	VSIG8	1
17072	VSNL1	1
17073	VSTM1	1
17074	VSTM2A	2.990905e-01
17075	VSTM2L	5.247573e-01
17076	VSX1	1
17077	VSX2	1
17078	VTA1	5.433470e-02
17079	VTCN1	2.415954e-01
17080	VTI1A	6.450828e-01
17081	VTI1B	1
17082	VTN	8.824412e-01
17083	VWA1	1
17084	VWA2	1
17085	VWA3A	9.914301e-01
17086	VWA3B	6.091499e-03
17087	VWA5A	7.841828e-01
17088	VWC2	5.285682e-03
17089	VWC2L	3.851026e-02
17090	VWCE	6.898361e-01
17091	VWF	9.132364e-01
17092	WAC	3.594236e-01
17093	WAPAL	6.238844e-01
17094	WARS	4.932176e-01
17095	WARS2	8.226152e-02
17096	WAS	8.077178e-01
17097	WASF1	2.137318e-02
17098	WASF2	9.166784e-01
17099	WASF3	4.102487e-01
Done

Running MutSig 2:
Scatter job 189: processing genes 17009 - 17099
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VPS13B
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
Cons ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
KS ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
VPS13B   10000 perm   3 sec   (2911 perm/sec)   p_kst 7.810000e-02   p_cons 6.137000e-01   p_joint 1.509000e-01

Joint ci ratio: 6.887046e-02	ci left: 1.345781e-01	ci right 1.442270e-01	k: 2787	n:20000
Cons ci ratio: 2.196259e-02	ci left: 6.075128e-01	ci right 6.210540e-01	k: 12286	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
VPS13B   20000 perm   9 sec   (2161 perm/sec)   p_kst 8.010000e-02   p_cons 6.143000e-01   p_joint 1.393500e-01

Outputting figure to mutsig2_images.part000000000189/VPS13B.26_12507_20000_0.0801_0.6143_0.13935.png
                gene_name: VPS13B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 2 percent done.
VPS13C
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
KS ci ratio: 8.741968e-03	ci left: 9.483556e-01	ci right 9.567782e-01	k: 9527	n:10000
VPS13C   10000 perm   3 sec   (2951 perm/sec)   p_kst 9.527000e-01   p_cons 7.289000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS13C.25_11630_10000_0.9527_0.7289_1.png
                gene_name: VPS13C
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
VWA3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.693458e-03	ci left: 9.488764e-01	ci right 9.572571e-01	k: 9532	n:10000
KS ci ratio: 1.670749e-02	ci left: 8.390805e-01	ci right 8.533172e-01	k: 8463	n:10000
VWA3B   10000 perm   2 sec   (4573 perm/sec)   p_kst 8.463000e-01   p_cons 9.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VWA3B.15_3993_10000_0.8463_0.9532_1.png
                gene_name: VWA3B
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
VPS13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
Cons ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
VPS13A   10000 perm   3 sec   (3376 perm/sec)   p_kst 3.400000e-02   p_cons 2.753000e-01   p_joint 6.090000e-02

Joint ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
Cons ci ratio: 4.509087e-02	ci left: 2.680255e-01	ci right 2.804402e-01	k: 5484	n:20000
KS ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
VPS13A   20000 perm   6 sec   (3111 perm/sec)   p_kst 3.300000e-02   p_cons 2.742000e-01   p_joint 4.715000e-02

Joint ci ratio: 1.023295e-01	ci left: 4.424217e-02	ci right 4.904611e-02	k: 1398	n:30000
Cons ci ratio: 3.659135e-02	ci left: 2.716097e-01	ci right 2.817669e-01	k: 8300	n:30000
KS ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
VPS13A   30000 perm   10 sec   (3002 perm/sec)   p_kst 3.393333e-02   p_cons 2.766667e-01   p_joint 4.660000e-02

Joint ci ratio: 1.062646e-01	ci left: 3.114908e-02	ci right 3.466916e-02	k: 1315	n:40000
Cons ci ratio: 3.217704e-02	ci left: 2.662505e-01	ci right 2.749828e-01	k: 10824	n:40000
KS ci ratio: 1.090369e-01	ci left: 2.959084e-02	ci right 3.302765e-02	k: 1251	n:40000
VPS13A   40000 perm   14 sec   (2945 perm/sec)   p_kst 3.127500e-02   p_cons 2.706000e-01   p_joint 3.287500e-02

Joint ci ratio: 9.439546e-02	ci left: 3.176404e-02	ci right 3.493044e-02	k: 1666	n:50000
Cons ci ratio: 2.874545e-02	ci left: 2.671871e-01	ci right 2.749995e-01	k: 13554	n:50000
KS ci ratio: 9.679396e-02	ci left: 3.022063e-02	ci right 3.331405e-02	k: 1587	n:50000
VPS13A   50000 perm   17 sec   (2892 perm/sec)   p_kst 3.174000e-02   p_cons 2.710800e-01   p_joint 3.332000e-02

Outputting figure to mutsig2_images.part000000000189/VPS13A.14_9941_50000_0.03174_0.27108_0.03332.png
                gene_name: VPS13A
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 7 percent done.
VWF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
Cons ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
KS ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
VWF   10000 perm   3 sec   (3354 perm/sec)   p_kst 6.975000e-01   p_cons 9.970000e-01   p_joint 8.318000e-01

Outputting figure to mutsig2_images.part000000000189/VWF.13_8646_10000_0.6975_0.997_0.8318.png
                gene_name: VWF
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 8 percent done.
VIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
VIL1   10000 perm   2 sec   (4881 perm/sec)   p_kst 7.170000e-02   p_cons 1.809000e-01   p_joint 7.340000e-02

Joint ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
Cons ci ratio: 5.892164e-02	ci left: 1.758339e-01	ci right 1.865589e-01	k: 3623	n:20000
KS ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
VIL1   20000 perm   5 sec   (4434 perm/sec)   p_kst 7.160000e-02   p_cons 1.811500e-01   p_joint 8.085000e-02

Outputting figure to mutsig2_images.part000000000189/VIL1.11_2560_20000_0.0716_0.18115_0.08085.png
                gene_name: VIL1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 10 percent done.
VPS13D
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
VPS13D   10000 perm   3 sec   (3186 perm/sec)   p_kst 1.373000e-01   p_cons 7.349000e-01   p_joint 2.500000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13D.10_13443_10000_0.1373_0.7349_0.25.png
                gene_name: VPS13D
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 11 percent done.
VN1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
Cons ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
KS ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
VN1R2   10000 perm   2 sec   (5583 perm/sec)   p_kst 3.313000e-01   p_cons 7.078000e-01   p_joint 4.992000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R2.9_1192_10000_0.3313_0.7078_0.4992.png
                gene_name: VN1R2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 13 percent done.
WARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
Cons ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
KS ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
WARS2   10000 perm   2 sec   (5599 perm/sec)   p_kst 7.176000e-01   p_cons 1.583000e-01   p_joint 5.541000e-01

Outputting figure to mutsig2_images.part000000000189/WARS2.9_1136_10000_0.7176_0.1583_0.5541.png
                gene_name: WARS2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 15 percent done.
WASF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
Cons ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
KS ci ratio: 5.298924e-02	ci left: 3.442234e-01	ci right 3.630619e-01	k: 3536	n:10000
WASF1   10000 perm   2 sec   (6125 perm/sec)   p_kst 3.536000e-01   p_cons 4.275000e-01   p_joint 5.149000e-01

Outputting figure to mutsig2_images.part000000000189/WASF1.8_1712_10000_0.3536_0.4275_0.5149.png
                gene_name: WASF1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 16 percent done.
VPRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
VPRBP   10000 perm   2 sec   (4873 perm/sec)   p_kst 8.046000e-01   p_cons 5.131000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPRBP.6_4453_10000_0.8046_0.5131_1.png
                gene_name: VPRBP
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
VPS41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
KS ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
VPS41   10000 perm   2 sec   (5652 perm/sec)   p_kst 4.149000e-01   p_cons 7.390000e-02   p_joint 1.544000e-01

Joint ci ratio: 6.381919e-02	ci left: 1.536115e-01	ci right 1.637879e-01	k: 3173	n:20000
Cons ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
KS ci ratio: 3.305968e-02	ci left: 4.059149e-01	ci right 4.196105e-01	k: 8255	n:20000
VPS41   20000 perm   4 sec   (5109 perm/sec)   p_kst 4.127500e-01   p_cons 7.245000e-02   p_joint 1.586500e-01

Outputting figure to mutsig2_images.part000000000189/VPS41.6_2681_20000_0.41275_0.07245_0.15865.png
                gene_name: VPS41
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 20 percent done.
VPS52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
Cons ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
KS ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
VPS52   10000 perm   2 sec   (5575 perm/sec)   p_kst 3.561000e-01   p_cons 8.902000e-01   p_joint 5.138000e-01

Outputting figure to mutsig2_images.part000000000189/VPS52.6_2252_10000_0.3561_0.8902_0.5138.png
                gene_name: VPS52
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
VWCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
Cons ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
VWCE   10000 perm   2 sec   (5041 perm/sec)   p_kst 2.702000e-01   p_cons 8.724000e-01   p_joint 3.638000e-01

Outputting figure to mutsig2_images.part000000000189/VWCE.6_2948_10000_0.2702_0.8724_0.3638.png
                gene_name: VWCE
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 23 percent done.
WAPAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
Cons ci ratio: 3.538158e-02	ci left: 5.411876e-01	ci right 5.607827e-01	k: 5510	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
WAPAL   10000 perm   2 sec   (4922 perm/sec)   p_kst 4.130000e-02   p_cons 5.510000e-01   p_joint 7.090000e-02

Joint ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
Cons ci ratio: 2.503282e-02	ci left: 5.438243e-01	ci right 5.576609e-01	k: 11015	n:20000
KS ci ratio: 1.350876e-01	ci left: 3.766484e-02	ci right 4.316980e-02	k: 807	n:20000
WAPAL   20000 perm   5 sec   (4440 perm/sec)   p_kst 4.035000e-02   p_cons 5.507500e-01   p_joint 8.300000e-02

Joint ci ratio: 7.806395e-02	ci left: 7.449868e-02	ci right 8.058343e-02	k: 2325	n:30000
Cons ci ratio: 2.038258e-02	ci left: 5.464848e-01	ci right 5.577718e-01	k: 16564	n:30000
KS ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
WAPAL   30000 perm   7 sec   (4256 perm/sec)   p_kst 4.006667e-02   p_cons 5.521333e-01   p_joint 7.750000e-02

Joint ci ratio: 6.509399e-02	ci left: 8.041276e-02	ci right 8.584794e-02	k: 3324	n:40000
Cons ci ratio: 1.763181e-02	ci left: 5.478112e-01	ci right 5.575811e-01	k: 22108	n:40000
KS ci ratio: 9.552247e-02	ci left: 3.846696e-02	ci right 4.235012e-02	k: 1615	n:40000
WAPAL   40000 perm   10 sec   (4138 perm/sec)   p_kst 4.037500e-02   p_cons 5.527000e-01   p_joint 8.310000e-02

Outputting figure to mutsig2_images.part000000000189/WAPAL.6_3645_40000_0.040375_0.5527_0.0831.png
                gene_name: WAPAL
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 25 percent done.
VN1R5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 1.312847e-02	ci left: 8.931325e-01	ci right 9.050339e-01	k: 8992	n:10000
VN1R5   10000 perm   2 sec   (6153 perm/sec)   p_kst 8.992000e-01   p_cons 7.093000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VN1R5.5_1077_10000_0.8992_0.7093_1.png
                gene_name: VN1R5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
VPS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
KS ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
VPS16   10000 perm   2 sec   (5041 perm/sec)   p_kst 8.670000e-01   p_cons 9.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS16.5_2616_10000_0.867_0.9018_1.png
                gene_name: VPS16
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
VPS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
Cons ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KS ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
VPS18   10000 perm   2 sec   (5370 perm/sec)   p_kst 7.158000e-01   p_cons 3.418000e-01   p_joint 5.530000e-01

Outputting figure to mutsig2_images.part000000000189/VPS18.5_2942_10000_0.7158_0.3418_0.553.png
                gene_name: VPS18
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 30 percent done.
VPS33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
Cons ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
VPS33A   10000 perm   2 sec   (5328 perm/sec)   p_kst 6.950000e-02   p_cons 8.040000e-02   p_joint 2.670000e-02

Joint ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
Cons ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
KS ci ratio: 1.015781e-01	ci left: 6.576929e-02	ci right 7.285655e-02	k: 1385	n:20000
VPS33A   20000 perm   4 sec   (4844 perm/sec)   p_kst 6.925000e-02   p_cons 7.900000e-02   p_joint 3.605000e-02

Joint ci ratio: 1.330994e-01	ci left: 2.622685e-02	ci right 2.999862e-02	k: 842	n:30000
Cons ci ratio: 7.743416e-02	ci left: 7.564447e-02	ci right 8.177074e-02	k: 2360	n:30000
KS ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
VPS33A   30000 perm   6 sec   (4619 perm/sec)   p_kst 6.970000e-02   p_cons 7.866667e-02   p_joint 2.806667e-02

Joint ci ratio: 8.516486e-02	ci left: 4.815383e-02	ci right 5.246175e-02	k: 2011	n:40000
Cons ci ratio: 6.679569e-02	ci left: 7.662090e-02	ci right 8.194037e-02	k: 3170	n:40000
KS ci ratio: 7.179950e-02	ci left: 6.685462e-02	ci right 7.185812e-02	k: 2773	n:40000
VPS33A   40000 perm   9 sec   (4498 perm/sec)   p_kst 6.932500e-02   p_cons 7.925000e-02   p_joint 5.027500e-02

Outputting figure to mutsig2_images.part000000000189/VPS33A.5_1843_40000_0.069325_0.07925_0.050275.png
                gene_name: VPS33A
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 31 percent done.
VSIG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
VSIG10   10000 perm   2 sec   (5563 perm/sec)   p_kst 9.500000e-03   p_cons 4.673000e-01   p_joint 7.680000e-02

Joint ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
Cons ci ratio: 2.927334e-02	ci left: 4.657602e-01	ci right 4.796477e-01	k: 9454	n:20000
KS ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
VSIG10   20000 perm   4 sec   (5027 perm/sec)   p_kst 9.100000e-03   p_cons 4.727000e-01   p_joint 3.465000e-02

Joint ci ratio: 1.019479e-01	ci left: 4.456738e-02	ci right 4.938751e-02	k: 1408	n:30000
Cons ci ratio: 2.394221e-02	ci left: 4.662040e-01	ci right 4.775348e-01	k: 14156	n:30000
KS ci ratio: 2.335866e-01	ci left: 8.213484e-03	ci right 1.041645e-02	k: 278	n:30000
VSIG10   30000 perm   6 sec   (4810 perm/sec)   p_kst 9.266667e-03   p_cons 4.718667e-01   p_joint 4.693333e-02

Joint ci ratio: 1.066845e-01	ci left: 3.090553e-02	ci right 3.441275e-02	k: 1305	n:40000
Cons ci ratio: 2.076572e-02	ci left: 4.662230e-01	ci right 4.760312e-01	k: 18845	n:40000
KS ci ratio: 2.003982e-01	ci left: 8.525105e-03	ci right 1.044712e-02	k: 378	n:40000
VSIG10   40000 perm   9 sec   (4666 perm/sec)   p_kst 9.450000e-03   p_cons 4.711250e-01   p_joint 3.262500e-02

Joint ci ratio: 9.273926e-02	ci left: 3.289778e-02	ci right 3.611656e-02	k: 1724	n:50000
Cons ci ratio: 1.860211e-02	ci left: 4.659769e-01	ci right 4.747465e-01	k: 23518	n:50000
KS ci ratio: 1.775008e-01	ci left: 8.802120e-03	ci right 1.053552e-02	k: 482	n:50000
VSIG10   50000 perm   11 sec   (4550 perm/sec)   p_kst 9.640000e-03   p_cons 4.703600e-01   p_joint 3.448000e-02

Joint ci ratio: 8.832703e-02	ci left: 3.037772e-02	ci right 3.320114e-02	k: 1906	n:60000
Cons ci ratio: 1.692280e-02	ci left: 4.680819e-01	ci right 4.760875e-01	k: 28325	n:60000
KS ci ratio: 1.603129e-01	ci left: 9.075238e-03	ci right 1.067271e-02	k: 591	n:60000
VSIG10   60000 perm   13 sec   (4449 perm/sec)   p_kst 9.850000e-03   p_cons 4.720833e-01   p_joint 3.176667e-02

Joint ci ratio: 9.512303e-02	ci left: 2.255788e-02	ci right 2.482470e-02	k: 1657	n:70000
Cons ci ratio: 1.565847e-02	ci left: 4.686672e-01	ci right 4.760780e-01	k: 33066	n:70000
KS ci ratio: 1.421768e-01	ci left: 9.978581e-03	ci right 1.151952e-02	k: 751	n:70000
VSIG10   70000 perm   16 sec   (4358 perm/sec)   p_kst 1.072857e-02   p_cons 4.723714e-01   p_joint 2.367143e-02

Joint ci ratio: 9.037817e-02	ci left: 2.193565e-02	ci right 2.402415e-02	k: 1837	n:80000
Cons ci ratio: 1.507758e-02	ci left: 4.545053e-01	ci right 4.614227e-01	k: 36637	n:80000
KS ci ratio: 1.314891e-01	ci left: 1.026457e-02	ci right 1.172122e-02	k: 878	n:80000
VSIG10   80000 perm   19 sec   (4277 perm/sec)   p_kst 1.097500e-02   p_cons 4.579625e-01   p_joint 2.296250e-02

Joint ci ratio: 8.948265e-02	ci left: 1.994273e-02	ci right 2.182166e-02	k: 1878	n:90000
Cons ci ratio: 1.420248e-02	ci left: 4.551517e-01	ci right 4.616733e-01	k: 41257	n:90000
KS ci ratio: 1.244713e-01	ci left: 1.022112e-02	ci right 1.158846e-02	k: 980	n:90000
VSIG10   90000 perm   21 sec   (4198 perm/sec)   p_kst 1.088889e-02   p_cons 4.584111e-01   p_joint 2.086667e-02

Joint ci ratio: 8.675036e-02	ci left: 1.914123e-02	ci right 2.088677e-02	k: 2000	n:100000
Cons ci ratio: 1.346177e-02	ci left: 4.557578e-01	ci right 4.619446e-01	k: 45885	n:100000
KS ci ratio: 1.177567e-01	ci left: 1.031421e-02	ci right 1.161439e-02	k: 1095	n:100000
VSIG10   100000 perm   24 sec   (4124 perm/sec)   p_kst 1.095000e-02   p_cons 4.588500e-01   p_joint 2.000000e-02

Joint ci ratio: 8.252408e-02	ci left: 1.926986e-02	ci right 2.093739e-02	k: 2210	n:110000
Cons ci ratio: 1.281407e-02	ci left: 4.567241e-01	ci right 4.626234e-01	k: 50564	n:110000
KS ci ratio: 1.117437e-01	ci left: 1.044503e-02	ci right 1.169004e-02	k: 1216	n:110000
VSIG10   110000 perm   27 sec   (4054 perm/sec)   p_kst 1.105455e-02   p_cons 4.596727e-01   p_joint 2.009091e-02

Joint ci ratio: 7.967065e-02	ci left: 1.898655e-02	ci right 2.057011e-02	k: 2372	n:120000
Cons ci ratio: 1.225760e-02	ci left: 4.572935e-01	ci right 4.629417e-01	k: 55214	n:120000
KS ci ratio: 1.072579e-01	ci left: 1.041754e-02	ci right 1.160627e-02	k: 1320	n:120000
VSIG10   120000 perm   30 sec   (3989 perm/sec)   p_kst 1.100000e-02   p_cons 4.601167e-01   p_joint 1.976667e-02

Joint ci ratio: 7.309209e-02	ci left: 2.085437e-02	ci right 2.244399e-02	k: 2813	n:130000
Cons ci ratio: 1.179173e-02	ci left: 4.567727e-01	ci right 4.621984e-01	k: 59733	n:130000
KS ci ratio: 1.029440e-01	ci left: 1.046259e-02	ci right 1.160554e-02	k: 1433	n:130000
VSIG10   130000 perm   33 sec   (3926 perm/sec)   p_kst 1.102308e-02   p_cons 4.594846e-01   p_joint 2.163846e-02

Joint ci ratio: 7.423399e-02	ci left: 1.880312e-02	ci right 2.025973e-02	k: 2733	n:140000
Cons ci ratio: 1.106298e-02	ci left: 4.701746e-01	ci right 4.754122e-01	k: 66191	n:140000
KS ci ratio: 9.914448e-02	ci left: 1.049505e-02	ci right 1.159677e-02	k: 1545	n:140000
VSIG10   140000 perm   36 sec   (3867 perm/sec)   p_kst 1.103571e-02   p_cons 4.727929e-01   p_joint 1.952143e-02

Outputting figure to mutsig2_images.part000000000189/VSIG10.5_1659_140000_0.011036_0.47279_0.019521.png
                gene_name: VSIG10
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 33 percent done.
WAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
WAC   10000 perm   2 sec   (5673 perm/sec)   p_kst 9.190000e-02   p_cons 1.170000e-02   p_joint 1.150000e-02

Joint ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
Cons ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
KS ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
WAC   20000 perm   4 sec   (5088 perm/sec)   p_kst 9.375000e-02   p_cons 1.050000e-02   p_joint 1.220000e-02

Joint ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
Cons ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
KS ci ratio: 7.205264e-02	ci left: 8.655523e-02	ci right 9.305780e-02	k: 2693	n:30000
WAC   30000 perm   6 sec   (4843 perm/sec)   p_kst 8.976667e-02   p_cons 1.036667e-02   p_joint 1.483333e-02

Joint ci ratio: 1.735050e-01	ci left: 1.150599e-02	ci right 1.371561e-02	k: 503	n:40000
Cons ci ratio: 1.862743e-01	ci left: 9.929432e-03	ci right 1.199249e-02	k: 437	n:40000
KS ci ratio: 6.315590e-02	ci left: 8.506875e-02	ci right 9.064125e-02	k: 3513	n:40000
WAC   40000 perm   9 sec   (4680 perm/sec)   p_kst 8.782500e-02   p_cons 1.092500e-02   p_joint 1.257500e-02

Joint ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
Cons ci ratio: 1.653165e-01	ci left: 1.020014e-02	ci right 1.205728e-02	k: 555	n:50000
KS ci ratio: 5.649905e-02	ci left: 8.533339e-02	ci right 9.031459e-02	k: 4390	n:50000
WAC   50000 perm   11 sec   (4546 perm/sec)   p_kst 8.780000e-02   p_cons 1.110000e-02   p_joint 1.020000e-02

Joint ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
Cons ci ratio: 1.523275e-01	ci left: 1.008457e-02	ci right 1.176324e-02	k: 654	n:60000
KS ci ratio: 5.151855e-02	ci left: 8.572837e-02	ci right 9.027824e-02	k: 5279	n:60000
WAC   60000 perm   14 sec   (4439 perm/sec)   p_kst 8.798333e-02   p_cons 1.090000e-02   p_joint 9.466667e-03

Joint ci ratio: 1.550989e-01	ci left: 8.341128e-03	ci right 9.757161e-03	k: 632	n:70000
Cons ci ratio: 1.411370e-01	ci left: 1.013021e-02	ci right 1.168216e-02	k: 762	n:70000
KS ci ratio: 4.787185e-02	ci left: 8.531783e-02	ci right 8.951645e-02	k: 6118	n:70000
WAC   70000 perm   16 sec   (4346 perm/sec)   p_kst 8.740000e-02   p_cons 1.088571e-02   p_joint 9.028571e-03

Joint ci ratio: 1.229346e-01	ci left: 1.177794e-02	ci right 1.333271e-02	k: 1003	n:80000
Cons ci ratio: 1.312628e-01	ci left: 1.030085e-02	ci right 1.175993e-02	k: 881	n:80000
KS ci ratio: 4.479107e-02	ci left: 8.541458e-02	ci right 8.934040e-02	k: 6989	n:80000
WAC   80000 perm   19 sec   (4258 perm/sec)   p_kst 8.736250e-02   p_cons 1.101250e-02   p_joint 1.253750e-02

Joint ci ratio: 1.171443e-01	ci left: 1.156852e-02	ci right 1.301873e-02	k: 1105	n:90000
Cons ci ratio: 1.228977e-01	ci left: 1.049039e-02	ci right 1.187472e-02	k: 1005	n:90000
KS ci ratio: 4.229948e-02	ci left: 8.526553e-02	ci right 8.896114e-02	k: 7839	n:90000
WAC   90000 perm   22 sec   (4180 perm/sec)   p_kst 8.710000e-02   p_cons 1.116667e-02   p_joint 1.227778e-02

Joint ci ratio: 1.257759e-01	ci left: 9.014594e-03	ci right 1.023410e-02	k: 961	n:100000
Cons ci ratio: 1.166850e-01	ci left: 1.050840e-02	ci right 1.182018e-02	k: 1115	n:100000
KS ci ratio: 4.014173e-02	ci left: 8.530974e-02	ci right 8.881425e-02	k: 8705	n:100000
WAC   100000 perm   24 sec   (4106 perm/sec)   p_kst 8.705000e-02   p_cons 1.115000e-02   p_joint 9.610000e-03

Joint ci ratio: 9.781288e-02	ci left: 1.368652e-02	ci right 1.510289e-02	k: 1582	n:110000
Cons ci ratio: 1.100641e-01	ci left: 1.077216e-02	ci right 1.203561e-02	k: 1253	n:110000
KS ci ratio: 3.827716e-02	ci left: 8.537690e-02	ci right 8.871764e-02	k: 9574	n:110000
WAC   110000 perm   27 sec   (4037 perm/sec)   p_kst 8.703636e-02   p_cons 1.139091e-02   p_joint 1.438182e-02

Joint ci ratio: 8.421961e-02	ci left: 1.698594e-02	ci right 1.848749e-02	k: 2127	n:120000
Cons ci ratio: 1.042284e-01	ci left: 1.104242e-02	ci right 1.226469e-02	k: 1397	n:120000
KS ci ratio: 3.672748e-02	ci left: 8.510546e-02	ci right 8.829788e-02	k: 10403	n:120000
WAC   120000 perm   30 sec   (3969 perm/sec)   p_kst 8.669167e-02   p_cons 1.164167e-02   p_joint 1.772500e-02

Joint ci ratio: 7.851120e-02	ci left: 1.807614e-02	ci right 1.956081e-02	k: 2445	n:130000
Cons ci ratio: 1.001227e-01	ci left: 1.107001e-02	ci right 1.224423e-02	k: 1514	n:130000
KS ci ratio: 3.519780e-02	ci left: 8.556490e-02	ci right 8.863816e-02	k: 11322	n:130000
WAC   130000 perm   33 sec   (3905 perm/sec)   p_kst 8.709231e-02   p_cons 1.164615e-02   p_joint 1.880769e-02

Joint ci ratio: 7.437283e-02	ci left: 1.873299e-02	ci right 2.018701e-02	k: 2723	n:140000
Cons ci ratio: 9.661675e-02	ci left: 1.105961e-02	ci right 1.218932e-02	k: 1626	n:140000
KS ci ratio: 3.389615e-02	ci left: 8.572005e-02	ci right 8.868279e-02	k: 12207	n:140000
WAC   140000 perm   36 sec   (3844 perm/sec)   p_kst 8.719286e-02   p_cons 1.161429e-02   p_joint 1.945000e-02

Outputting figure to mutsig2_images.part000000000189/WAC.5_2000_140000_0.087193_0.011614_0.01945.png
                gene_name: WAC
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 34 percent done.
VIPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
Cons ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
VIPR2   10000 perm   2 sec   (6261 perm/sec)   p_kst 1.919000e-01   p_cons 1.000000e-03   p_joint 8.800000e-03

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
VIPR2   20000 perm   4 sec   (5601 perm/sec)   p_kst 1.815000e-01   p_cons 8.500000e-04   p_joint 5.750000e-03

Joint ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
Cons ci ratio: 6.622033e-01	ci left: 7.849900e-04	ci right 1.583363e-03	k: 34	n:30000
KS ci ratio: 4.848026e-02	ci left: 1.745776e-01	ci right 1.832847e-01	k: 5367	n:30000
VIPR2   30000 perm   6 sec   (5307 perm/sec)   p_kst 1.789000e-01   p_cons 1.133333e-03   p_joint 4.566667e-03

Joint ci ratio: 3.331123e-01	ci left: 2.876268e-03	ci right 4.047646e-03	k: 137	n:40000
Cons ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
KS ci ratio: 4.218758e-02	ci left: 1.737666e-01	ci right 1.812803e-01	k: 7100	n:40000
VIPR2   40000 perm   8 sec   (5004 perm/sec)   p_kst 1.775000e-01   p_cons 1.175000e-03   p_joint 3.425000e-03

Joint ci ratio: 1.957063e-01	ci left: 7.180741e-03	ci right 8.757189e-03	k: 397	n:50000
Cons ci ratio: 5.144175e-01	ci left: 8.635357e-04	ci right 1.476753e-03	k: 57	n:50000
KS ci ratio: 3.675624e-02	ci left: 1.819027e-01	ci right 1.887339e-01	k: 9265	n:50000
VIPR2   50000 perm   10 sec   (4906 perm/sec)   p_kst 1.853000e-01   p_cons 1.140000e-03   p_joint 7.940000e-03

Joint ci ratio: 1.919901e-01	ci left: 6.237376e-03	ci right 7.577653e-03	k: 413	n:60000
Cons ci ratio: 4.554059e-01	ci left: 9.537900e-04	ci right 1.529536e-03	k: 73	n:60000
KS ci ratio: 3.366751e-02	ci left: 1.811880e-01	ci right 1.874092e-01	k: 11057	n:60000
VIPR2   60000 perm   12 sec   (4814 perm/sec)   p_kst 1.842833e-01   p_cons 1.216667e-03   p_joint 6.883333e-03

Joint ci ratio: 1.880169e-01	ci left: 5.591054e-03	ci right 6.764732e-03	k: 431	n:70000
Cons ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
KS ci ratio: 3.118490e-02	ci left: 1.812775e-01	ci right 1.870344e-01	k: 12890	n:70000
VIPR2   70000 perm   15 sec   (4735 perm/sec)   p_kst 1.841429e-01   p_cons 1.200000e-03   p_joint 6.157143e-03

Joint ci ratio: 2.052781e-01	ci left: 4.071714e-03	ci right 5.014771e-03	k: 362	n:80000
Cons ci ratio: 4.200369e-01	ci left: 8.599484e-04	ci right 1.327449e-03	k: 86	n:80000
KS ci ratio: 2.919702e-02	ci left: 1.811959e-01	ci right 1.865771e-01	k: 14710	n:80000
VIPR2   80000 perm   17 sec   (4660 perm/sec)   p_kst 1.838750e-01   p_cons 1.075000e-03   p_joint 4.525000e-03

Joint ci ratio: 2.033706e-01	ci left: 3.693025e-03	ci right 4.539429e-03	k: 369	n:90000
Cons ci ratio: 3.977989e-01	ci left: 8.640862e-04	ci right 1.302429e-03	k: 96	n:90000
KS ci ratio: 2.749148e-02	ci left: 1.817384e-01	ci right 1.868153e-01	k: 16584	n:90000
VIPR2   90000 perm   20 sec   (4588 perm/sec)   p_kst 1.842667e-01   p_cons 1.066667e-03   p_joint 4.100000e-03

Joint ci ratio: 2.106803e-01	ci left: 3.086574e-03	ci right 3.822691e-03	k: 344	n:100000
Cons ci ratio: 3.823500e-01	ci left: 8.498320e-04	ci right 1.259995e-03	k: 104	n:100000
KS ci ratio: 2.609615e-02	ci left: 1.816921e-01	ci right 1.865062e-01	k: 18409	n:100000
VIPR2   100000 perm   22 sec   (4516 perm/sec)   p_kst 1.840900e-01   p_cons 1.040000e-03   p_joint 3.440000e-03

Joint ci ratio: 2.026246e-01	ci left: 3.047347e-03	ci right 3.742879e-03	k: 372	n:110000
Cons ci ratio: 3.702149e-01	ci left: 8.301917e-04	ci right 1.215080e-03	k: 111	n:110000
KS ci ratio: 2.486215e-02	ci left: 1.820397e-01	ci right 1.866315e-01	k: 20276	n:110000
VIPR2   110000 perm   25 sec   (4444 perm/sec)   p_kst 1.843273e-01   p_cons 1.009091e-03   p_joint 3.381818e-03

Joint ci ratio: 2.065791e-01	ci left: 2.682658e-03	ci right 3.308410e-03	k: 358	n:120000
Cons ci ratio: 3.860817e-01	ci left: 6.931249e-04	ci right 1.031748e-03	k: 102	n:120000
KS ci ratio: 2.380856e-02	ci left: 1.820766e-01	ci right 1.864720e-01	k: 22112	n:120000
VIPR2   120000 perm   27 sec   (4375 perm/sec)   p_kst 1.842667e-01   p_cons 8.500000e-04   p_joint 2.983333e-03

Joint ci ratio: 1.961901e-01	ci left: 2.761191e-03	ci right 3.369003e-03	k: 397	n:130000
Cons ci ratio: 3.653788e-01	ci left: 7.234062e-04	ci right 1.053359e-03	k: 114	n:130000
KS ci ratio: 2.285100e-02	ci left: 1.824712e-01	ci right 1.866967e-01	k: 23995	n:130000
VIPR2   130000 perm   30 sec   (4312 perm/sec)   p_kst 1.845769e-01   p_cons 8.769231e-04   p_joint 3.053846e-03

Joint ci ratio: 2.145583e-01	ci left: 2.123429e-03	ci right 2.640384e-03	k: 332	n:140000
Cons ci ratio: 3.547442e-01	ci left: 7.172116e-04	ci right 1.032624e-03	k: 121	n:140000
KS ci ratio: 2.204219e-02	ci left: 1.822435e-01	ci right 1.863124e-01	k: 25798	n:140000
VIPR2   140000 perm   33 sec   (4246 perm/sec)   p_kst 1.842714e-01   p_cons 8.642857e-04   p_joint 2.371429e-03

Joint ci ratio: 1.202613e-01	ci left: 6.610171e-03	ci right 7.462385e-03	k: 1054	n:150000
Cons ci ratio: 3.423413e-01	ci left: 7.241469e-04	ci right 1.029013e-03	k: 130	n:150000
KS ci ratio: 2.128100e-02	ci left: 1.825066e-01	ci right 1.864389e-01	k: 27670	n:150000
VIPR2   150000 perm   36 sec   (4181 perm/sec)   p_kst 1.844667e-01   p_cons 8.666667e-04   p_joint 7.026667e-03

Joint ci ratio: 1.228335e-01	ci left: 5.936328e-03	ci right 6.719223e-03	k: 1011	n:160000
Cons ci ratio: 3.372365e-01	ci left: 7.017533e-04	ci right 9.918271e-04	k: 134	n:160000
KS ci ratio: 2.061369e-02	ci left: 1.824463e-01	ci right 1.862526e-01	k: 29495	n:160000
VIPR2   160000 perm   39 sec   (4118 perm/sec)   p_kst 1.843438e-01   p_cons 8.375000e-04   p_joint 6.318750e-03

Joint ci ratio: 1.217123e-01	ci left: 5.695435e-03	ci right 6.439208e-03	k: 1030	n:170000
Cons ci ratio: 3.231754e-01	ci left: 7.252144e-04	ci right 1.009899e-03	k: 146	n:170000
KS ci ratio: 2.000154e-02	ci left: 1.824535e-01	ci right 1.861455e-01	k: 31330	n:170000
VIPR2   170000 perm   42 sec   (4051 perm/sec)   p_kst 1.842941e-01   p_cons 8.588235e-04   p_joint 6.058824e-03

Joint ci ratio: 1.527707e-01	ci left: 3.365965e-03	ci right 3.927986e-03	k: 655	n:180000
Cons ci ratio: 3.167776e-01	ci left: 7.155807e-04	ci right 9.897960e-04	k: 152	n:180000
KS ci ratio: 1.958471e-02	ci left: 1.802642e-01	ci right 1.838350e-01	k: 32768	n:180000
VIPR2   180000 perm   45 sec   (3985 perm/sec)   p_kst 1.820444e-01   p_cons 8.444444e-04   p_joint 3.638889e-03

Joint ci ratio: 1.487440e-01	ci left: 3.371136e-03	ci right 3.917864e-03	k: 691	n:190000
Cons ci ratio: 3.097719e-01	ci left: 7.118644e-04	ci right 9.774310e-04	k: 159	n:190000
KS ci ratio: 1.906758e-02	ci left: 1.802306e-01	ci right 1.837054e-01	k: 34573	n:190000
VIPR2   190000 perm   48 sec   (3922 perm/sec)   p_kst 1.819632e-01   p_cons 8.368421e-04   p_joint 3.636842e-03

Joint ci ratio: 1.516434e-01	ci left: 3.077429e-03	ci right 3.587134e-03	k: 665	n:200000
Cons ci ratio: 3.005217e-01	ci left: 7.224446e-04	ci right 9.823744e-04	k: 169	n:200000
KS ci ratio: 1.860719e-02	ci left: 1.799175e-01	ci right 1.833017e-01	k: 36321	n:200000
VIPR2   200000 perm   52 sec   (3858 perm/sec)   p_kst 1.816050e-01   p_cons 8.450000e-04   p_joint 3.325000e-03

Joint ci ratio: 1.473874e-01	ci left: 3.109656e-03	ci right 3.608970e-03	k: 704	n:210000
Cons ci ratio: 2.928690e-01	ci left: 7.277108e-04	ci right 9.816316e-04	k: 178	n:210000
KS ci ratio: 1.816140e-02	ci left: 1.799152e-01	ci right 1.832174e-01	k: 38128	n:210000
VIPR2   210000 perm   55 sec   (3797 perm/sec)   p_kst 1.815619e-01   p_cons 8.476190e-04   p_joint 3.352381e-03

Joint ci ratio: 1.461560e-01	ci left: 3.020840e-03	ci right 3.501486e-03	k: 716	n:220000
Cons ci ratio: 2.842632e-01	ci left: 7.410159e-04	ci right 9.906192e-04	k: 189	n:220000
KS ci ratio: 1.774023e-02	ci left: 1.800136e-01	ci right 1.832402e-01	k: 39957	n:220000
VIPR2   220000 perm   59 sec   (3738 perm/sec)   p_kst 1.816227e-01   p_cons 8.590909e-04   p_joint 3.254545e-03

Joint ci ratio: 1.449546e-01	ci left: 2.939764e-03	ci right 3.403332e-03	k: 728	n:230000
Cons ci ratio: 2.763740e-01	ci left: 7.532634e-04	ci right 9.987267e-04	k: 200	n:230000
KS ci ratio: 1.735569e-02	ci left: 1.799570e-01	ci right 1.831119e-01	k: 41752	n:230000
VIPR2   230000 perm   62 sec   (3681 perm/sec)   p_kst 1.815304e-01   p_cons 8.695652e-04   p_joint 3.165217e-03

Joint ci ratio: 1.431056e-01	ci left: 2.893582e-03	ci right 3.343550e-03	k: 747	n:240000
Cons ci ratio: 2.697447e-01	ci left: 7.606924e-04	ci right 1.001625e-03	k: 210	n:240000
KS ci ratio: 1.698630e-02	ci left: 1.800594e-01	ci right 1.831483e-01	k: 43584	n:240000
VIPR2   240000 perm   66 sec   (3625 perm/sec)   p_kst 1.816000e-01   p_cons 8.750000e-04   p_joint 3.112500e-03

Joint ci ratio: 1.447740e-01	ci left: 2.712269e-03	ci right 3.139384e-03	k: 730	n:250000
Cons ci ratio: 2.623850e-01	ci left: 7.750645e-04	ci right 1.012752e-03	k: 222	n:250000
KS ci ratio: 1.663506e-02	ci left: 1.802340e-01	ci right 1.832613e-01	k: 45436	n:250000
VIPR2   250000 perm   70 sec   (3572 perm/sec)   p_kst 1.817440e-01   p_cons 8.880000e-04   p_joint 2.920000e-03

Joint ci ratio: 1.441900e-01	ci left: 2.630186e-03	ci right 3.042559e-03	k: 736	n:260000
Cons ci ratio: 2.555965e-01	ci left: 7.884133e-04	ci right 1.022942e-03	k: 234	n:260000
KS ci ratio: 1.631338e-02	ci left: 1.802386e-01	ci right 1.832069e-01	k: 47247	n:260000
VIPR2   260000 perm   74 sec   (3521 perm/sec)   p_kst 1.817192e-01   p_cons 9.000000e-04   p_joint 2.830769e-03

Joint ci ratio: 1.418058e-01	ci left: 2.622051e-03	ci right 3.025776e-03	k: 761	n:270000
Cons ci ratio: 2.518737e-01	ci left: 7.834899e-04	ci right 1.012627e-03	k: 241	n:270000
KS ci ratio: 1.601127e-02	ci left: 1.802139e-01	ci right 1.831263e-01	k: 49050	n:270000
VIPR2   270000 perm   78 sec   (3471 perm/sec)   p_kst 1.816667e-01   p_cons 8.925926e-04   p_joint 2.818519e-03

Joint ci ratio: 1.417198e-01	ci left: 2.531842e-03	ci right 2.921421e-03	k: 762	n:280000
Cons ci ratio: 2.493131e-01	ci left: 7.722433e-04	ci right 9.954389e-04	k: 246	n:280000
KS ci ratio: 1.572875e-02	ci left: 1.801273e-01	ci right 1.829864e-01	k: 50835	n:280000
VIPR2   280000 perm   82 sec   (3423 perm/sec)   p_kst 1.815536e-01   p_cons 8.785714e-04   p_joint 2.721429e-03

Joint ci ratio: 1.427620e-01	ci left: 2.407945e-03	ci right 2.781416e-03	k: 751	n:290000
Cons ci ratio: 2.434677e-01	ci left: 7.844396e-04	ci right 1.005041e-03	k: 258	n:290000
KS ci ratio: 1.545923e-02	ci left: 1.800746e-01	ci right 1.828835e-01	k: 52628	n:290000
VIPR2   290000 perm   86 sec   (3376 perm/sec)   p_kst 1.814759e-01   p_cons 8.896552e-04   p_joint 2.589655e-03

Joint ci ratio: 1.413617e-01	ci left: 2.375900e-03	ci right 2.740482e-03	k: 766	n:300000
Cons ci ratio: 2.402436e-01	ci left: 7.802108e-04	ci right 9.962850e-04	k: 265	n:300000
KS ci ratio: 1.520431e-02	ci left: 1.800025e-01	ci right 1.827636e-01	k: 54414	n:300000
VIPR2   300000 perm   90 sec   (3330 perm/sec)   p_kst 1.813800e-01   p_cons 8.833333e-04   p_joint 2.553333e-03

Joint ci ratio: 1.422064e-01	ci left: 2.271247e-03	ci right 2.622028e-03	k: 757	n:310000
Cons ci ratio: 2.375802e-01	ci left: 7.732386e-04	ci right 9.846586e-04	k: 271	n:310000
KS ci ratio: 1.495931e-02	ci left: 1.799805e-01	ci right 1.826964e-01	k: 56214	n:310000
VIPR2   310000 perm   94 sec   (3286 perm/sec)   p_kst 1.813355e-01   p_cons 8.741935e-04   p_joint 2.441935e-03

Joint ci ratio: 1.425895e-01	ci left: 2.188209e-03	ci right 2.527153e-03	k: 753	n:320000
Cons ci ratio: 2.354276e-01	ci left: 7.637737e-04	ci right 9.704379e-04	k: 276	n:320000
KS ci ratio: 1.472378e-02	ci left: 1.800007e-01	ci right 1.826738e-01	k: 58027	n:320000
VIPR2   320000 perm   99 sec   (3242 perm/sec)   p_kst 1.813344e-01   p_cons 8.625000e-04   p_joint 2.353125e-03

Joint ci ratio: 1.068284e-01	ci left: 3.846484e-03	ci right 4.283508e-03	k: 1340	n:330000
Cons ci ratio: 2.329195e-01	ci left: 7.577439e-04	ci right 9.602777e-04	k: 282	n:330000
KS ci ratio: 1.488230e-02	ci left: 1.724239e-01	ci right 1.750122e-01	k: 57326	n:330000
VIPR2   330000 perm   103 sec   (3201 perm/sec)   p_kst 1.737152e-01   p_cons 8.545455e-04   p_joint 4.060606e-03

Joint ci ratio: 1.058099e-01	ci left: 3.807785e-03	ci right 4.236030e-03	k: 1366	n:340000
Cons ci ratio: 2.281319e-01	ci left: 7.687139e-04	ci right 9.693622e-04	k: 294	n:340000
KS ci ratio: 1.465629e-02	ci left: 1.725510e-01	ci right 1.751016e-01	k: 59100	n:340000
VIPR2   340000 perm   108 sec   (3160 perm/sec)   p_kst 1.738235e-01   p_cons 8.647059e-04   p_joint 4.017647e-03

Joint ci ratio: 1.062067e-01	ci left: 3.671164e-03	ci right 4.085688e-03	k: 1356	n:350000
Cons ci ratio: 2.262240e-01	ci left: 7.602230e-04	ci right 9.567640e-04	k: 299	n:350000
KS ci ratio: 1.444989e-02	ci left: 1.724804e-01	ci right 1.749936e-01	k: 60807	n:350000
VIPR2   350000 perm   112 sec   (3119 perm/sec)   p_kst 1.737343e-01   p_cons 8.542857e-04   p_joint 3.874286e-03

Joint ci ratio: 1.049014e-01	ci left: 3.661137e-03	ci right 4.069135e-03	k: 1390	n:360000
Cons ci ratio: 2.232669e-01	ci left: 7.600770e-04	ci right 9.536584e-04	k: 307	n:360000
KS ci ratio: 1.425666e-02	ci left: 1.723196e-01	ci right 1.747967e-01	k: 62480	n:360000
VIPR2   360000 perm   117 sec   (3080 perm/sec)   p_kst 1.735556e-01   p_cons 8.527778e-04   p_joint 3.861111e-03

Joint ci ratio: 9.399801e-02	ci left: 4.458399e-03	ci right 4.900765e-03	k: 1730	n:370000
Cons ci ratio: 2.200745e-01	ci left: 7.625083e-04	ci right 9.535565e-04	k: 316	n:370000
KS ci ratio: 1.406581e-02	ci left: 1.722730e-01	ci right 1.747159e-01	k: 64192	n:370000
VIPR2   370000 perm   122 sec   (3043 perm/sec)   p_kst 1.734919e-01   p_cons 8.540541e-04   p_joint 4.675676e-03

Joint ci ratio: 9.354350e-02	ci left: 4.384752e-03	ci right 4.817592e-03	k: 1747	n:380000
Cons ci ratio: 2.163521e-01	ci left: 7.698080e-04	ci right 9.589894e-04	k: 327	n:380000
KS ci ratio: 1.388701e-02	ci left: 1.721345e-01	ci right 1.745442e-01	k: 65868	n:380000
VIPR2   380000 perm   126 sec   (3008 perm/sec)   p_kst 1.733368e-01   p_cons 8.605263e-04   p_joint 4.597368e-03

Joint ci ratio: 9.403663e-02	ci left: 4.227235e-03	ci right 4.646847e-03	k: 1729	n:390000
Cons ci ratio: 2.150461e-01	ci left: 7.597712e-04	ci right 9.452102e-04	k: 331	n:390000
KS ci ratio: 1.370394e-02	ci left: 1.722309e-01	ci right 1.746099e-01	k: 67633	n:390000
VIPR2   390000 perm   131 sec   (2973 perm/sec)   p_kst 1.734179e-01   p_cons 8.487179e-04   p_joint 4.433333e-03

Joint ci ratio: 9.398733e-02	ci left: 4.126427e-03	ci right 4.535804e-03	k: 1731	n:400000
Cons ci ratio: 2.115691e-01	ci left: 7.668083e-04	ci right 9.505463e-04	k: 342	n:400000
KS ci ratio: 1.353335e-02	ci left: 1.722079e-01	ci right 1.745568e-01	k: 69352	n:400000
VIPR2   400000 perm   136 sec   (2937 perm/sec)   p_kst 1.733800e-01   p_cons 8.550000e-04   p_joint 4.327500e-03

Joint ci ratio: 9.286822e-02	ci left: 4.125828e-03	ci right 4.530007e-03	k: 1773	n:410000
Cons ci ratio: 2.088467e-01	ci left: 7.689014e-04	ci right 9.504673e-04	k: 351	n:410000
KS ci ratio: 1.336545e-02	ci left: 1.722617e-01	ci right 1.745819e-01	k: 71102	n:410000
VIPR2   410000 perm   141 sec   (2903 perm/sec)   p_kst 1.734195e-01   p_cons 8.560976e-04   p_joint 4.324390e-03

Joint ci ratio: 9.550372e-02	ci left: 3.804375e-03	ci right 4.188232e-03	k: 1677	n:420000
Cons ci ratio: 2.070899e-01	ci left: 7.641358e-04	ci right 9.428660e-04	k: 357	n:420000
KS ci ratio: 1.321100e-02	ci left: 1.721540e-01	ci right 1.744458e-01	k: 72785	n:420000
VIPR2   420000 perm   146 sec   (2872 perm/sec)   p_kst 1.732976e-01   p_cons 8.500000e-04   p_joint 3.992857e-03

Joint ci ratio: 9.496990e-02	ci left: 3.759031e-03	ci right 4.136074e-03	k: 1696	n:430000
Cons ci ratio: 2.048142e-01	ci left: 7.640104e-04	ci right 9.405018e-04	k: 365	n:430000
KS ci ratio: 1.306306e-02	ci left: 1.720236e-01	ci right 1.742878e-01	k: 74456	n:430000
VIPR2   430000 perm   151 sec   (2840 perm/sec)   p_kst 1.731535e-01   p_cons 8.488372e-04   p_joint 3.944186e-03

Joint ci ratio: 9.389712e-02	ci left: 3.760141e-03	ci right 4.132801e-03	k: 1735	n:440000
Cons ci ratio: 2.018035e-01	ci left: 7.703741e-04	ci right 9.453973e-04	k: 376	n:440000
KS ci ratio: 1.291023e-02	ci left: 1.721146e-01	ci right 1.743533e-01	k: 76222	n:440000
VIPR2   440000 perm   157 sec   (2809 perm/sec)   p_kst 1.732318e-01   p_cons 8.545455e-04   p_joint 3.943182e-03

Joint ci ratio: 9.349662e-02	ci left: 3.709130e-03	ci right 4.075081e-03	k: 1750	n:450000
Cons ci ratio: 1.996960e-01	ci left: 7.701389e-04	ci right 9.430587e-04	k: 384	n:450000
KS ci ratio: 1.275879e-02	ci left: 1.722882e-01	ci right 1.745027e-01	k: 78027	n:450000
VIPR2   450000 perm   162 sec   (2779 perm/sec)   p_kst 1.733933e-01   p_cons 8.533333e-04   p_joint 3.888889e-03

Joint ci ratio: 9.273287e-02	ci left: 3.690071e-03	ci right 4.051005e-03	k: 1779	n:460000
Cons ci ratio: 1.989237e-01	ci left: 7.595926e-04	ci right 9.294048e-04	k: 387	n:460000
KS ci ratio: 1.261695e-02	ci left: 1.723546e-01	ci right 1.745451e-01	k: 79786	n:460000
VIPR2   460000 perm   167 sec   (2748 perm/sec)   p_kst 1.734478e-01   p_cons 8.413043e-04   p_joint 3.867391e-03

Joint ci ratio: 9.168276e-02	ci left: 3.696782e-03	ci right 4.054058e-03	k: 1820	n:470000
Cons ci ratio: 1.961619e-01	ci left: 7.656780e-04	ci right 9.341903e-04	k: 398	n:470000
KS ci ratio: 1.248038e-02	ci left: 1.724035e-01	ci right 1.745708e-01	k: 81538	n:470000
VIPR2   470000 perm   173 sec   (2719 perm/sec)   p_kst 1.734851e-01   p_cons 8.468085e-04   p_joint 3.872340e-03

Joint ci ratio: 9.669107e-02	ci left: 3.247452e-03	ci right 3.579420e-03	k: 1637	n:480000
Cons ci ratio: 1.935121e-01	ci left: 7.715254e-04	ci right 9.387608e-04	k: 409	n:480000
KS ci ratio: 1.235166e-02	ci left: 1.723694e-01	ci right 1.745137e-01	k: 83251	n:480000
VIPR2   480000 perm   178 sec   (2690 perm/sec)   p_kst 1.734396e-01   p_cons 8.520833e-04   p_joint 3.410417e-03

Joint ci ratio: 8.841172e-02	ci left: 3.819200e-03	ci right 4.174459e-03	k: 1957	n:490000
Cons ci ratio: 1.921120e-01	ci left: 7.674337e-04	ci right 9.324379e-04	k: 415	n:490000
KS ci ratio: 1.222736e-02	ci left: 1.723246e-01	ci right 1.744466e-01	k: 84958	n:490000
VIPR2   490000 perm   184 sec   (2662 perm/sec)   p_kst 1.733837e-01   p_cons 8.469388e-04   p_joint 3.993878e-03

Joint ci ratio: 8.769869e-02	ci left: 3.805406e-03	ci right 4.156380e-03	k: 1989	n:500000
Cons ci ratio: 1.911959e-01	ci left: 7.597008e-04	ci right 9.221730e-04	k: 419	n:500000
KS ci ratio: 1.210336e-02	ci left: 1.723615e-01	ci right 1.744623e-01	k: 86705	n:500000
VIPR2   500000 perm   190 sec   (2635 perm/sec)   p_kst 1.734100e-01   p_cons 8.380000e-04   p_joint 3.978000e-03

Joint ci ratio: 8.739405e-02	ci left: 3.757636e-03	ci right 4.102939e-03	k: 2003	n:510000
Cons ci ratio: 1.898451e-01	ci left: 7.560082e-04	ci right 9.164165e-04	k: 425	n:510000
KS ci ratio: 1.197535e-02	ci left: 1.725809e-01	ci right 1.746620e-01	k: 88546	n:510000
VIPR2   510000 perm   196 sec   (2608 perm/sec)   p_kst 1.736196e-01   p_cons 8.333333e-04   p_joint 3.927451e-03

Joint ci ratio: 8.715756e-02	ci left: 3.706061e-03	ci right 4.045657e-03	k: 2014	n:520000
Cons ci ratio: 1.885225e-01	ci left: 7.524614e-04	ci right 9.108776e-04	k: 431	n:520000
KS ci ratio: 1.186245e-02	ci left: 1.725234e-01	ci right 1.745841e-01	k: 90247	n:520000
VIPR2   520000 perm   201 sec   (2582 perm/sec)   p_kst 1.735519e-01   p_cons 8.288462e-04   p_joint 3.873077e-03

Joint ci ratio: 8.653786e-02	ci left: 3.689663e-03	ci right 4.025230e-03	k: 2043	n:530000
Cons ci ratio: 1.872273e-01	ci left: 7.490522e-04	ci right 9.055440e-04	k: 437	n:530000
KS ci ratio: 1.174943e-02	ci left: 1.725472e-01	ci right 1.745884e-01	k: 91990	n:530000
VIPR2   530000 perm   207 sec   (2556 perm/sec)   p_kst 1.735660e-01   p_cons 8.245283e-04   p_joint 3.854717e-03

Joint ci ratio: 8.609812e-02	ci left: 3.659383e-03	ci right 3.990420e-03	k: 2064	n:540000
Cons ci ratio: 1.855405e-01	ci left: 7.493045e-04	ci right 9.042800e-04	k: 445	n:540000
KS ci ratio: 1.163845e-02	ci left: 1.725980e-01	ci right 1.746203e-01	k: 93748	n:540000
VIPR2   540000 perm   213 sec   (2531 perm/sec)   p_kst 1.736074e-01   p_cons 8.240741e-04   p_joint 3.822222e-03

Joint ci ratio: 8.695052e-02	ci left: 3.521684e-03	ci right 3.843579e-03	k: 2024	n:550000
Cons ci ratio: 1.843053e-01	ci left: 7.460847e-04	ci right 8.992522e-04	k: 451	n:550000
KS ci ratio: 1.153327e-02	ci left: 1.725799e-01	ci right 1.745836e-01	k: 95469	n:550000
VIPR2   550000 perm   219 sec   (2506 perm/sec)   p_kst 1.735800e-01   p_cons 8.200000e-04   p_joint 3.680000e-03

Joint ci ratio: 8.648316e-02	ci left: 3.497229e-03	ci right 3.815083e-03	k: 2046	n:560000
Cons ci ratio: 1.828948e-01	ci left: 7.446873e-04	ci right 8.962681e-04	k: 458	n:560000
KS ci ratio: 1.143166e-02	ci left: 1.725428e-01	ci right 1.745284e-01	k: 97179	n:560000
VIPR2   560000 perm   226 sec   (2482 perm/sec)   p_kst 1.735339e-01   p_cons 8.178571e-04   p_joint 3.653571e-03

Joint ci ratio: 8.020109e-02	ci left: 4.006248e-03	ci right 4.342682e-03	k: 2378	n:570000
Cons ci ratio: 1.807414e-01	ci left: 7.500427e-04	ci right 9.007194e-04	k: 469	n:570000
KS ci ratio: 1.132584e-02	ci left: 1.726805e-01	ci right 1.746491e-01	k: 98988	n:570000
VIPR2   570000 perm   232 sec   (2458 perm/sec)   p_kst 1.736632e-01   p_cons 8.228070e-04   p_joint 4.171930e-03

Joint ci ratio: 7.560290e-02	ci left: 4.439313e-03	ci right 4.789802e-03	k: 2675	n:580000
Cons ci ratio: 1.786623e-01	ci left: 7.552236e-04	ci right 9.050073e-04	k: 480	n:580000
KS ci ratio: 1.122809e-02	ci left: 1.726810e-01	ci right 1.746326e-01	k: 100720	n:580000
VIPR2   580000 perm   238 sec   (2434 perm/sec)   p_kst 1.736552e-01   p_cons 8.275862e-04   p_joint 4.612069e-03

Joint ci ratio: 7.498905e-02	ci left: 4.437242e-03	ci right 4.784599e-03	k: 2719	n:590000
Cons ci ratio: 1.768333e-01	ci left: 7.586184e-04	ci right 9.073705e-04	k: 490	n:590000
KS ci ratio: 1.113027e-02	ci left: 1.727476e-01	ci right 1.746827e-01	k: 102491	n:590000
VIPR2   590000 perm   245 sec   (2410 perm/sec)   p_kst 1.737136e-01   p_cons 8.305085e-04   p_joint 4.608475e-03

Joint ci ratio: 7.511689e-02	ci left: 4.348562e-03	ci right 4.689583e-03	k: 2710	n:600000
Cons ci ratio: 1.759403e-01	ci left: 7.539400e-04	ci right 9.009487e-04	k: 495	n:600000
KS ci ratio: 1.103259e-02	ci left: 1.728735e-01	ci right 1.747930e-01	k: 104299	n:600000
VIPR2   600000 perm   251 sec   (2388 perm/sec)   p_kst 1.738317e-01   p_cons 8.250000e-04   p_joint 4.516667e-03

Joint ci ratio: 7.465092e-02	ci left: 4.331967e-03	ci right 4.669487e-03	k: 2744	n:610000
Cons ci ratio: 1.747119e-01	ci left: 7.525521e-04	ci right 8.981576e-04	k: 502	n:610000
KS ci ratio: 1.094125e-02	ci left: 1.728956e-01	ci right 1.747993e-01	k: 106046	n:610000
VIPR2   610000 perm   258 sec   (2366 perm/sec)   p_kst 1.738459e-01   p_cons 8.229508e-04   p_joint 4.498361e-03

Joint ci ratio: 6.831719e-02	ci left: 5.101749e-03	ci right 5.464187e-03	k: 3274	n:620000
Cons ci ratio: 1.719967e-01	ci left: 7.651014e-04	ci right 9.105957e-04	k: 518	n:620000
KS ci ratio: 1.085305e-02	ci left: 1.728929e-01	ci right 1.747811e-01	k: 107778	n:620000
VIPR2   620000 perm   264 sec   (2344 perm/sec)   p_kst 1.738355e-01   p_cons 8.354839e-04   p_joint 5.280645e-03

Joint ci ratio: 6.763833e-02	ci left: 5.123752e-03	ci right 5.483994e-03	k: 3340	n:630000
Cons ci ratio: 1.708486e-01	ci left: 7.635913e-04	ci right 9.077292e-04	k: 525	n:630000
KS ci ratio: 1.076415e-02	ci left: 1.729648e-01	ci right 1.748382e-01	k: 109557	n:630000
VIPR2   630000 perm   271 sec   (2323 perm/sec)   p_kst 1.739000e-01   p_cons 8.333333e-04   p_joint 5.301587e-03

Joint ci ratio: 6.721773e-02	ci left: 5.108211e-03	ci right 5.465040e-03	k: 3382	n:640000
Cons ci ratio: 1.692472e-01	ci left: 7.666203e-04	ci right 9.098352e-04	k: 535	n:640000
KS ci ratio: 1.068205e-02	ci left: 1.729097e-01	ci right 1.747682e-01	k: 111256	n:640000
VIPR2   640000 perm   278 sec   (2301 perm/sec)   p_kst 1.738375e-01   p_cons 8.359375e-04   p_joint 5.284375e-03

Joint ci ratio: 6.741104e-02	ci left: 5.000875e-03	ci right 5.351250e-03	k: 3363	n:650000
Cons ci ratio: 1.681529e-01	ci left: 7.651406e-04	ci right 9.070613e-04	k: 542	n:650000
KS ci ratio: 1.060350e-02	ci left: 1.728104e-01	ci right 1.746541e-01	k: 112925	n:650000
VIPR2   650000 perm   285 sec   (2281 perm/sec)   p_kst 1.737308e-01   p_cons 8.338462e-04   p_joint 5.173846e-03

Joint ci ratio: 6.708377e-02	ci left: 4.974261e-03	ci right 5.321013e-03	k: 3396	n:660000
Cons ci ratio: 1.667764e-01	ci left: 7.666125e-04	ci right 9.075252e-04	k: 551	n:660000
KS ci ratio: 1.052822e-02	ci left: 1.726718e-01	ci right 1.745008e-01	k: 114566	n:660000
VIPR2   660000 perm   292 sec   (2261 perm/sec)   p_kst 1.735848e-01   p_cons 8.348485e-04   p_joint 5.145455e-03

Joint ci ratio: 7.134892e-02	ci left: 4.325008e-03	ci right 4.646464e-03	k: 3004	n:670000
Cons ci ratio: 1.660266e-01	ci left: 7.623223e-04	ci right 9.017535e-04	k: 556	n:670000
KS ci ratio: 1.045119e-02	ci left: 1.726282e-01	ci right 1.744433e-01	k: 116268	n:670000
VIPR2   670000 perm   299 sec   (2241 perm/sec)   p_kst 1.735343e-01   p_cons 8.298507e-04   p_joint 4.483582e-03

Joint ci ratio: 7.300463e-02	ci left: 4.067883e-03	ci right 4.377541e-03	k: 2870	n:680000
Cons ci ratio: 1.648470e-01	ci left: 7.623893e-04	ci right 9.007438e-04	k: 564	n:680000
KS ci ratio: 1.037456e-02	ci left: 1.726212e-01	ci right 1.744228e-01	k: 117994	n:680000
VIPR2   680000 perm   306 sec   (2222 perm/sec)   p_kst 1.735206e-01   p_cons 8.294118e-04   p_joint 4.220588e-03

Joint ci ratio: 7.230216e-02	ci left: 4.088614e-03	ci right 4.396730e-03	k: 2926	n:690000
Cons ci ratio: 1.634071e-01	ci left: 7.652377e-04	ci right 9.027769e-04	k: 574	n:690000
KS ci ratio: 1.029876e-02	ci left: 1.726375e-01	ci right 1.744261e-01	k: 119736	n:690000
VIPR2   690000 perm   313 sec   (2203 perm/sec)   p_kst 1.735304e-01   p_cons 8.318841e-04   p_joint 4.240580e-03

Joint ci ratio: 7.214366e-02	ci left: 4.048439e-03	ci right 4.352830e-03	k: 2939	n:700000
Cons ci ratio: 1.625614e-01	ci left: 7.625275e-04	ci right 8.988009e-04	k: 580	n:700000
KS ci ratio: 1.022388e-02	ci left: 1.726734e-01	ci right 1.744493e-01	k: 121492	n:700000
VIPR2   700000 perm   321 sec   (2184 perm/sec)   p_kst 1.735600e-01   p_cons 8.285714e-04   p_joint 4.198571e-03

Joint ci ratio: 7.188844e-02	ci left: 4.020461e-03	ci right 4.321635e-03	k: 2960	n:710000
Cons ci ratio: 1.617287e-01	ci left: 7.598954e-04	ci right 8.949352e-04	k: 586	n:710000
KS ci ratio: 1.015315e-02	ci left: 1.726367e-01	ci right 1.743998e-01	k: 123197	n:710000
VIPR2   710000 perm   328 sec   (2167 perm/sec)   p_kst 1.735169e-01   p_cons 8.253521e-04   p_joint 4.169014e-03

Joint ci ratio: 4.892847e-02	ci left: 8.619858e-03	ci right 9.053553e-03	k: 6361	n:720000
Cons ci ratio: 1.484086e-01	ci left: 8.962062e-04	ci right 1.041190e-03	k: 696	n:720000
KS ci ratio: 1.008494e-02	ci left: 1.725705e-01	ci right 1.743210e-01	k: 124880	n:720000
VIPR2   720000 perm   335 sec   (2150 perm/sec)   p_kst 1.734444e-01   p_cons 9.666667e-04   p_joint 8.834722e-03

Joint ci ratio: 4.864686e-02	ci left: 8.601909e-03	ci right 9.032140e-03	k: 6435	n:730000
Cons ci ratio: 1.465278e-01	ci left: 9.076776e-04	ci right 1.052494e-03	k: 714	n:730000
KS ci ratio: 1.001809e-02	ci left: 1.725062e-01	ci right 1.742444e-01	k: 126563	n:730000
VIPR2   730000 perm   342 sec   (2133 perm/sec)   p_kst 1.733740e-01   p_cons 9.780822e-04   p_joint 8.815068e-03

Joint ci ratio: 4.739195e-02	ci left: 8.943652e-03	ci right 9.379122e-03	k: 6778	n:740000
Cons ci ratio: 1.451136e-01	ci left: 9.136405e-04	ci right 1.057879e-03	k: 728	n:740000
KS ci ratio: 9.952271e-03	ci left: 1.724517e-01	ci right 1.741779e-01	k: 128252	n:740000
VIPR2   740000 perm   350 sec   (2116 perm/sec)   p_kst 1.733135e-01   p_cons 9.837838e-04   p_joint 9.159459e-03

Joint ci ratio: 4.710473e-02	ci left: 8.933762e-03	ci right 9.366042e-03	k: 6861	n:750000
Cons ci ratio: 1.444221e-01	ci left: 9.104538e-04	ci right 1.053446e-03	k: 735	n:750000
KS ci ratio: 9.885615e-03	ci left: 1.724599e-01	ci right 1.741746e-01	k: 129987	n:750000
VIPR2   750000 perm   357 sec   (2101 perm/sec)   p_kst 1.733160e-01   p_cons 9.800000e-04   p_joint 9.148000e-03

Joint ci ratio: 4.766806e-02	ci left: 8.609446e-03	ci right 9.031152e-03	k: 6702	n:760000
Cons ci ratio: 1.429720e-01	ci left: 9.175016e-04	ci right 1.060030e-03	k: 750	n:760000
KS ci ratio: 9.815593e-03	ci left: 1.726046e-01	ci right 1.743084e-01	k: 131826	n:760000
VIPR2   760000 perm   365 sec   (2085 perm/sec)   p_kst 1.734553e-01   p_cons 9.868421e-04   p_joint 8.818421e-03

Joint ci ratio: 4.766723e-02	ci left: 8.498907e-03	ci right 8.915191e-03	k: 6703	n:770000
Cons ci ratio: 1.414724e-01	ci left: 9.256262e-04	ci right 1.067781e-03	k: 766	n:770000
KS ci ratio: 9.753351e-03	ci left: 1.725601e-01	ci right 1.742527e-01	k: 133522	n:770000
VIPR2   770000 perm   372 sec   (2067 perm/sec)   p_kst 1.734052e-01   p_cons 9.948052e-04   p_joint 8.705195e-03

Joint ci ratio: 4.829137e-02	ci left: 8.174580e-03	ci right 8.580366e-03	k: 6533	n:780000
Cons ci ratio: 1.411972e-01	ci left: 9.174690e-04	ci right 1.058074e-03	k: 769	n:780000
KS ci ratio: 9.690327e-03	ci left: 1.725745e-01	ci right 1.742562e-01	k: 135263	n:780000
VIPR2   780000 perm   380 sec   (2051 perm/sec)   p_kst 1.734141e-01   p_cons 9.858974e-04   p_joint 8.375641e-03

Joint ci ratio: 4.968530e-02	ci left: 7.623435e-03	ci right 8.013098e-03	k: 6175	n:790000
Cons ci ratio: 1.408324e-01	ci left: 9.107399e-04	ci right 1.049923e-03	k: 773	n:790000
KS ci ratio: 9.626682e-03	ci left: 1.726428e-01	ci right 1.743140e-01	k: 137047	n:790000
VIPR2   790000 perm   388 sec   (2034 perm/sec)   p_kst 1.734772e-01   p_cons 9.784810e-04   p_joint 7.816456e-03

Joint ci ratio: 4.957864e-02	ci left: 7.561468e-03	ci right 7.947110e-03	k: 6202	n:800000
Cons ci ratio: 1.400207e-01	ci left: 9.102104e-04	ci right 1.048444e-03	k: 782	n:800000
KS ci ratio: 9.569404e-03	ci left: 1.725560e-01	ci right 1.742164e-01	k: 138708	n:800000
VIPR2   800000 perm   396 sec   (2018 perm/sec)   p_kst 1.733850e-01   p_cons 9.775000e-04   p_joint 7.752500e-03

Joint ci ratio: 4.618640e-02	ci left: 8.611176e-03	ci right 9.019508e-03	k: 7139	n:810000
Cons ci ratio: 1.389597e-01	ci left: 9.132711e-04	ci right 1.050832e-03	k: 794	n:810000
KS ci ratio: 9.508589e-03	ci left: 1.726081e-01	ci right 1.742584e-01	k: 140480	n:810000
VIPR2   810000 perm   405 sec   (2002 perm/sec)   p_kst 1.734321e-01   p_cons 9.802469e-04   p_joint 8.813580e-03

Joint ci ratio: 4.506282e-02	ci left: 8.937801e-03	ci right 9.351044e-03	k: 7497	n:820000
Cons ci ratio: 1.380939e-01	ci left: 9.139062e-04	ci right 1.050634e-03	k: 804	n:820000
KS ci ratio: 9.451611e-03	ci left: 1.725775e-01	ci right 1.742175e-01	k: 142185	n:820000
VIPR2   820000 perm   413 sec   (1986 perm/sec)   p_kst 1.733963e-01   p_cons 9.804878e-04   p_joint 9.142683e-03

Joint ci ratio: 4.496558e-02	ci left: 8.869421e-03	ci right 9.278595e-03	k: 7530	n:830000
Cons ci ratio: 1.375825e-01	ci left: 9.098748e-04	ci right 1.045454e-03	k: 810	n:830000
KS ci ratio: 9.392645e-03	ci left: 1.726390e-01	ci right 1.742693e-01	k: 143966	n:830000
VIPR2   830000 perm   421 sec   (1971 perm/sec)   p_kst 1.734530e-01   p_cons 9.759036e-04   p_joint 9.072289e-03

Joint ci ratio: 4.510117e-02	ci left: 8.712026e-03	ci right 9.115181e-03	k: 7486	n:840000
Cons ci ratio: 1.364926e-01	ci left: 9.139887e-04	ci right 1.049014e-03	k: 823	n:840000
KS ci ratio: 9.338567e-03	ci left: 1.725826e-01	ci right 1.742030e-01	k: 145649	n:840000
VIPR2   840000 perm   429 sec   (1956 perm/sec)   p_kst 1.733917e-01   p_cons 9.797619e-04   p_joint 8.911905e-03

Joint ci ratio: 4.483547e-02	ci left: 8.713060e-03	ci right 9.113827e-03	k: 7575	n:850000
Cons ci ratio: 1.353473e-01	ci left: 9.191465e-04	ci right 1.053703e-03	k: 837	n:850000
KS ci ratio: 9.282212e-03	ci left: 1.726262e-01	ci right 1.742372e-01	k: 147416	n:850000
VIPR2   850000 perm   438 sec   (1941 perm/sec)   p_kst 1.734306e-01   p_cons 9.847059e-04   p_joint 8.911765e-03

Joint ci ratio: 4.518204e-02	ci left: 8.480656e-03	ci right 8.873827e-03	k: 7461	n:860000
Cons ci ratio: 1.341516e-01	ci left: 9.253129e-04	ci right 1.059480e-03	k: 852	n:860000
KS ci ratio: 9.227576e-03	ci left: 1.726468e-01	ci right 1.742484e-01	k: 149164	n:860000
VIPR2   860000 perm   446 sec   (1926 perm/sec)   p_kst 1.734465e-01   p_cons 9.906977e-04   p_joint 8.675581e-03

Joint ci ratio: 4.492693e-02	ci left: 8.479778e-03	ci right 8.870630e-03	k: 7546	n:870000
Cons ci ratio: 1.336826e-01	ci left: 9.213425e-04	ci right 1.054430e-03	k: 858	n:870000
KS ci ratio: 9.174886e-03	ci left: 1.726360e-01	ci right 1.742283e-01	k: 150885	n:870000
VIPR2   870000 perm   455 sec   (1912 perm/sec)   p_kst 1.734310e-01   p_cons 9.862069e-04   p_joint 8.673563e-03

Joint ci ratio: 4.467019e-02	ci left: 8.481173e-03	ci right 8.869799e-03	k: 7633	n:880000
Cons ci ratio: 1.329111e-01	ci left: 9.218574e-04	ci right 1.054190e-03	k: 868	n:880000
KS ci ratio: 9.120884e-03	ci left: 1.726946e-01	ci right 1.742780e-01	k: 152667	n:880000
VIPR2   880000 perm   464 sec   (1897 perm/sec)   p_kst 1.734852e-01   p_cons 9.863636e-04   p_joint 8.673864e-03

Joint ci ratio: 4.370674e-02	ci left: 8.761486e-03	ci right 9.154080e-03	k: 7971	n:890000
Cons ci ratio: 1.320778e-01	ci left: 9.234494e-04	ci right 1.055114e-03	k: 879	n:890000
KS ci ratio: 9.067611e-03	ci left: 1.727586e-01	ci right 1.743334e-01	k: 154455	n:890000
VIPR2   890000 perm   473 sec   (1883 perm/sec)   p_kst 1.735449e-01   p_cons 9.876404e-04   p_joint 8.956180e-03

Joint ci ratio: 4.414968e-02	ci left: 8.491582e-03	ci right 8.876035e-03	k: 7814	n:900000
Cons ci ratio: 1.315558e-01	ci left: 9.207100e-04	ci right 1.051425e-03	k: 886	n:900000
KS ci ratio: 9.014876e-03	ci left: 1.728335e-01	ci right 1.743997e-01	k: 156254	n:900000
VIPR2   900000 perm   481 sec   (1869 perm/sec)   p_kst 1.736156e-01   p_cons 9.844444e-04   p_joint 8.682222e-03

Joint ci ratio: 4.400437e-02	ci left: 8.454777e-03	ci right 8.836273e-03	k: 7866	n:910000
Cons ci ratio: 1.307475e-01	ci left: 9.222837e-04	ci right 1.052355e-03	k: 897	n:910000
KS ci ratio: 8.967204e-03	ci left: 1.727740e-01	ci right 1.743314e-01	k: 157932	n:910000
VIPR2   910000 perm   490 sec   (1856 perm/sec)   p_kst 1.735516e-01   p_cons 9.857143e-04   p_joint 8.643956e-03

Joint ci ratio: 4.373809e-02	ci left: 8.466082e-03	ci right 8.845717e-03	k: 7962	n:920000
Cons ci ratio: 1.301691e-01	ci left: 9.206707e-04	ci right 1.049896e-03	k: 905	n:920000
KS ci ratio: 8.916935e-03	ci left: 1.728233e-01	ci right 1.743723e-01	k: 159709	n:920000
VIPR2   920000 perm   499 sec   (1843 perm/sec)   p_kst 1.735967e-01   p_cons 9.836957e-04   p_joint 8.654348e-03

Joint ci ratio: 4.357486e-02	ci left: 8.438858e-03	ci right 8.815825e-03	k: 8022	n:930000
Cons ci ratio: 1.288246e-01	ci left: 9.305396e-04	ci right 1.059698e-03	k: 924	n:930000
KS ci ratio: 8.868133e-03	ci left: 1.728511e-01	ci right 1.743918e-01	k: 161467	n:930000
VIPR2   930000 perm   508 sec   (1829 perm/sec)   p_kst 1.736204e-01   p_cons 9.935484e-04   p_joint 8.625806e-03

Joint ci ratio: 4.336207e-02	ci left: 8.432211e-03	ci right 8.806996e-03	k: 8101	n:940000
Cons ci ratio: 1.278604e-01	ci left: 9.350558e-04	ci right 1.063796e-03	k: 938	n:940000
KS ci ratio: 8.824507e-03	ci left: 1.727360e-01	ci right 1.742681e-01	k: 163091	n:940000
VIPR2   940000 perm   518 sec   (1816 perm/sec)   p_kst 1.735011e-01   p_cons 9.978723e-04   p_joint 8.618085e-03

Joint ci ratio: 4.315236e-02	ci left: 8.425709e-03	ci right 8.798349e-03	k: 8180	n:950000
Cons ci ratio: 1.273867e-01	ci left: 9.323462e-04	ci right 1.060201e-03	k: 945	n:950000
KS ci ratio: 8.780680e-03	ci left: 1.726507e-01	ci right 1.741744e-01	k: 164741	n:950000
VIPR2   950000 perm   527 sec   (1804 perm/sec)   p_kst 1.734116e-01   p_cons 9.947368e-04   p_joint 8.610526e-03

Joint ci ratio: 4.350430e-02	ci left: 8.203971e-03	ci right 8.569838e-03	k: 8050	n:960000
Cons ci ratio: 1.269181e-01	ci left: 9.296939e-04	ci right 1.056681e-03	k: 952	n:960000
KS ci ratio: 8.751021e-03	ci left: 1.721253e-01	ci right 1.736392e-01	k: 165966	n:960000
VIPR2   960000 perm   536 sec   (1791 perm/sec)   p_kst 1.728812e-01   p_cons 9.916667e-04   p_joint 8.385417e-03

Joint ci ratio: 4.331671e-02	ci left: 8.190775e-03	ci right 8.554438e-03	k: 8120	n:970000
Cons ci ratio: 1.262574e-01	ci left: 9.300923e-04	ci right 1.056423e-03	k: 962	n:970000
KS ci ratio: 8.705727e-03	ci left: 1.721314e-01	ci right 1.736375e-01	k: 167697	n:970000
VIPR2   970000 perm   545 sec   (1778 perm/sec)   p_kst 1.728835e-01   p_cons 9.917526e-04   p_joint 8.371134e-03

Joint ci ratio: 4.436042e-02	ci left: 7.729705e-03	ci right 8.081377e-03	k: 7746	n:980000
Cons ci ratio: 1.254136e-01	ci left: 9.334494e-04	ci right 1.059326e-03	k: 975	n:980000
KS ci ratio: 8.660759e-03	ci left: 1.721497e-01	ci right 1.736481e-01	k: 169440	n:980000
VIPR2   980000 perm   555 sec   (1766 perm/sec)   p_kst 1.728980e-01   p_cons 9.948980e-04   p_joint 7.904082e-03

Joint ci ratio: 4.414449e-02	ci left: 7.727545e-03	ci right 8.077364e-03	k: 7822	n:990000
Cons ci ratio: 1.249029e-01	ci left: 9.318484e-04	ci right 1.056959e-03	k: 983	n:990000
KS ci ratio: 8.616602e-03	ci left: 1.721636e-01	ci right 1.736545e-01	k: 171179	n:990000
VIPR2   990000 perm   564 sec   (1755 perm/sec)   p_kst 1.729081e-01   p_cons 9.929293e-04   p_joint 7.901010e-03

Joint ci ratio: 4.434954e-02	ci left: 7.580042e-03	ci right 7.924818e-03	k: 7751	n:1000000
Cons ci ratio: 1.242105e-01	ci left: 9.331872e-04	ci right 1.057732e-03	k: 994	n:1000000
KS ci ratio: 8.574733e-03	ci left: 1.721233e-01	ci right 1.736066e-01	k: 172864	n:1000000
VIPR2   1000000 perm   574 sec   (1744 perm/sec)   p_kst 1.728640e-01   p_cons 9.940000e-04   p_joint 7.751000e-03

Joint ci ratio: 4.949862e-02	ci left: 6.018499e-03	ci right 6.324937e-03	k: 6232	n:1010000
Cons ci ratio: 1.235909e-01	ci left: 9.335418e-04	ci right 1.057467e-03	k: 1004	n:1010000
KS ci ratio: 8.273379e-03	ci left: 1.810987e-01	ci right 1.826041e-01	k: 183669	n:1010000
VIPR2   1010000 perm   583 sec   (1732 perm/sec)   p_kst 1.818505e-01   p_cons 9.940594e-04   p_joint 6.170297e-03

Joint ci ratio: 4.928971e-02	ci left: 6.010813e-03	ci right 6.315531e-03	k: 6285	n:1020000
Cons ci ratio: 1.228595e-01	ci left: 9.357916e-04	ci right 1.059227e-03	k: 1016	n:1020000
KS ci ratio: 8.234989e-03	ci left: 1.810206e-01	ci right 1.825184e-01	k: 185404	n:1020000
VIPR2   1020000 perm   592 sec   (1722 perm/sec)   p_kst 1.817686e-01   p_cons 9.960784e-04   p_joint 6.161765e-03

Joint ci ratio: 4.906397e-02	ci left: 6.008074e-03	ci right 6.311219e-03	k: 6343	n:1030000
Cons ci ratio: 1.224390e-01	ci left: 9.332938e-04	ci right 1.055948e-03	k: 1023	n:1030000
KS ci ratio: 8.193678e-03	ci left: 1.810692e-01	ci right 1.825598e-01	k: 187268	n:1030000
VIPR2   1030000 perm   602 sec   (1711 perm/sec)   p_kst 1.818136e-01   p_cons 9.932039e-04   p_joint 6.158252e-03

Joint ci ratio: 4.880679e-02	ci left: 6.013939e-03	ci right 6.315745e-03	k: 6410	n:1040000
Cons ci ratio: 1.217866e-01	ci left: 9.345737e-04	ci right 1.056694e-03	k: 1034	n:1040000
KS ci ratio: 8.153798e-03	ci left: 1.810870e-01	ci right 1.825705e-01	k: 189101	n:1040000
VIPR2   1040000 perm   612 sec   (1700 perm/sec)   p_kst 1.818279e-01   p_cons 9.942308e-04   p_joint 6.163462e-03

Joint ci ratio: 4.855361e-02	ci left: 6.019697e-03	ci right 6.320180e-03	k: 6477	n:1050000
Cons ci ratio: 1.211445e-01	ci left: 9.358309e-04	ci right 1.057425e-03	k: 1045	n:1050000
KS ci ratio: 8.114626e-03	ci left: 1.810998e-01	ci right 1.825763e-01	k: 190929	n:1050000
VIPR2   1050000 perm   621 sec   (1690 perm/sec)   p_kst 1.818371e-01   p_cons 9.952381e-04   p_joint 6.168571e-03

Joint ci ratio: 4.934288e-02	ci left: 5.772791e-03	ci right 6.065767e-03	k: 6273	n:1060000
Cons ci ratio: 1.206267e-01	ci left: 9.352361e-04	ci right 1.056196e-03	k: 1054	n:1060000
KS ci ratio: 8.075910e-03	ci left: 1.811161e-01	ci right 1.825856e-01	k: 192761	n:1060000
VIPR2   1060000 perm   631 sec   (1679 perm/sec)   p_kst 1.818500e-01   p_cons 9.943396e-04   p_joint 5.917925e-03

Joint ci ratio: 4.909301e-02	ci left: 5.777917e-03	ci right 6.069627e-03	k: 6337	n:1070000
Cons ci ratio: 1.201155e-01	ci left: 9.346535e-04	ci right 1.054990e-03	k: 1063	n:1070000
KS ci ratio: 8.037061e-03	ci left: 1.811573e-01	ci right 1.826201e-01	k: 194620	n:1070000
VIPR2   1070000 perm   641 sec   (1669 perm/sec)   p_kst 1.818879e-01   p_cons 9.934579e-04   p_joint 5.922430e-03

Joint ci ratio: 4.905545e-02	ci left: 5.733561e-03	ci right 6.022803e-03	k: 6347	n:1080000
Cons ci ratio: 1.197785e-01	ci left: 9.313881e-04	ci right 1.050944e-03	k: 1069	n:1080000
KS ci ratio: 8.000460e-03	ci left: 1.811349e-01	ci right 1.825908e-01	k: 196411	n:1080000
VIPR2   1080000 perm   651 sec   (1658 perm/sec)   p_kst 1.818620e-01   p_cons 9.898148e-04   p_joint 5.876852e-03

Joint ci ratio: 5.012008e-02	ci left: 5.440833e-03	ci right 5.721437e-03	k: 6082	n:1090000
Cons ci ratio: 1.194999e-01	ci left: 9.272930e-04	ci right 1.046027e-03	k: 1074	n:1090000
KS ci ratio: 7.964527e-03	ci left: 1.811066e-01	ci right 1.825557e-01	k: 198195	n:1090000
VIPR2   1090000 perm   662 sec   (1648 perm/sec)   p_kst 1.818303e-01   p_cons 9.853211e-04   p_joint 5.579817e-03

Joint ci ratio: 4.985829e-02	ci left: 5.448826e-03	ci right 5.728332e-03	k: 6146	n:1100000
Cons ci ratio: 1.194448e-01	ci left: 9.197448e-04	ci right 1.037454e-03	k: 1075	n:1100000
KS ci ratio: 7.927111e-03	ci left: 1.811523e-01	ci right 1.825949e-01	k: 200060	n:1100000
VIPR2   1100000 perm   672 sec   (1637 perm/sec)   p_kst 1.818727e-01   p_cons 9.772727e-04   p_joint 5.587273e-03

Joint ci ratio: 4.979037e-02	ci left: 5.414860e-03	ci right 5.692234e-03	k: 6163	n:1110000
Cons ci ratio: 1.188388e-01	ci left: 9.210734e-04	ci right 1.038312e-03	k: 1086	n:1110000
KS ci ratio: 7.891292e-03	ci left: 1.811567e-01	ci right 1.825928e-01	k: 201880	n:1110000
VIPR2   1110000 perm   682 sec   (1626 perm/sec)   p_kst 1.818739e-01   p_cons 9.783784e-04   p_joint 5.552252e-03

Joint ci ratio: 4.965812e-02	ci left: 5.395610e-03	ci right 5.671243e-03	k: 6196	n:1120000
Cons ci ratio: 1.184582e-01	ci left: 9.189140e-04	ci right 1.035477e-03	k: 1093	n:1120000
KS ci ratio: 7.856874e-03	ci left: 1.811262e-01	ci right 1.825558e-01	k: 203661	n:1120000
VIPR2   1120000 perm   693 sec   (1616 perm/sec)   p_kst 1.818402e-01   p_cons 9.758929e-04   p_joint 5.532143e-03

Joint ci ratio: 4.941936e-02	ci left: 5.400301e-03	ci right 5.674809e-03	k: 6256	n:1130000
Cons ci ratio: 1.179204e-01	ci left: 9.193700e-04	ci right 1.035425e-03	k: 1103	n:1130000
KS ci ratio: 7.821786e-03	ci left: 1.811387e-01	ci right 1.825620e-01	k: 205490	n:1130000
VIPR2   1130000 perm   704 sec   (1606 perm/sec)   p_kst 1.818496e-01   p_cons 9.761062e-04   p_joint 5.536283e-03

Joint ci ratio: 4.929792e-02	ci left: 5.379786e-03	ci right 5.652560e-03	k: 6287	n:1140000
Cons ci ratio: 1.173900e-01	ci left: 9.198191e-04	ci right 1.035372e-03	k: 1113	n:1140000
KS ci ratio: 7.789735e-03	ci left: 1.810530e-01	ci right 1.824697e-01	k: 207207	n:1140000
VIPR2   1140000 perm   714 sec   (1596 perm/sec)   p_kst 1.817605e-01   p_cons 9.763158e-04   p_joint 5.514912e-03

Joint ci ratio: 4.744185e-02	ci left: 5.761698e-03	ci right 6.042538e-03	k: 6786	n:1150000
Cons ci ratio: 1.167627e-01	ci left: 9.219499e-04	ci right 1.037109e-03	k: 1125	n:1150000
KS ci ratio: 7.755557e-03	ci left: 1.810651e-01	ci right 1.824757e-01	k: 209035	n:1150000
VIPR2   1150000 perm   725 sec   (1586 perm/sec)   p_kst 1.817696e-01   p_cons 9.782609e-04   p_joint 5.900870e-03

Joint ci ratio: 4.721963e-02	ci left: 5.766548e-03	ci right 6.046272e-03	k: 6850	n:1160000
Cons ci ratio: 1.160942e-01	ci left: 9.248827e-04	ci right 1.039701e-03	k: 1138	n:1160000
KS ci ratio: 7.721736e-03	ci left: 1.810804e-01	ci right 1.824849e-01	k: 210867	n:1160000
VIPR2   1160000 perm   736 sec   (1576 perm/sec)   p_kst 1.817819e-01   p_cons 9.810345e-04   p_joint 5.905172e-03

Joint ci ratio: 4.699026e-02	ci left: 5.773853e-03	ci right 6.052533e-03	k: 6917	n:1170000
Cons ci ratio: 1.152870e-01	ci left: 9.302574e-04	ci right 1.044886e-03	k: 1154	n:1170000
KS ci ratio: 7.686962e-03	ci left: 1.811493e-01	ci right 1.825480e-01	k: 212762	n:1170000
VIPR2   1170000 perm   747 sec   (1566 perm/sec)   p_kst 1.818479e-01   p_cons 9.863248e-04   p_joint 5.911966e-03

Joint ci ratio: 4.678441e-02	ci left: 5.776011e-03	ci right 6.053542e-03	k: 6978	n:1180000
Cons ci ratio: 1.147419e-01	ci left: 9.314277e-04	ci right 1.045621e-03	k: 1165	n:1180000
KS ci ratio: 7.655072e-03	ci left: 1.811231e-01	ci right 1.825158e-01	k: 214546	n:1180000
VIPR2   1180000 perm   758 sec   (1557 perm/sec)   p_kst 1.818186e-01   p_cons 9.872881e-04   p_joint 5.913559e-03

Joint ci ratio: 4.658125e-02	ci left: 5.778135e-03	ci right 6.054530e-03	k: 7039	n:1190000
Cons ci ratio: 1.141559e-01	ci left: 9.333960e-04	ci right 1.047206e-03	k: 1177	n:1190000
KS ci ratio: 7.622500e-03	ci left: 1.811393e-01	ci right 1.825261e-01	k: 216380	n:1190000
VIPR2   1190000 perm   769 sec   (1547 perm/sec)   p_kst 1.818319e-01   p_cons 9.890756e-04   p_joint 5.915126e-03

Joint ci ratio: 4.756061e-02	ci left: 5.495260e-03	ci right 5.763801e-03	k: 6754	n:1200000
Cons ci ratio: 1.134833e-01	ci left: 9.369523e-04	ci right 1.050478e-03	k: 1191	n:1200000
KS ci ratio: 7.590064e-03	ci left: 1.811660e-01	ci right 1.825472e-01	k: 218227	n:1200000
VIPR2   1200000 perm   780 sec   (1538 perm/sec)   p_kst 1.818558e-01   p_cons 9.925000e-04   p_joint 5.628333e-03

Joint ci ratio: 4.509350e-02	ci left: 6.066628e-03	ci right 6.347314e-03	k: 7509	n:1210000
Cons ci ratio: 1.127757e-01	ci left: 9.412550e-04	ci right 1.054544e-03	k: 1206	n:1210000
KS ci ratio: 7.558710e-03	ci left: 1.811660e-01	ci right 1.825413e-01	k: 220042	n:1210000
VIPR2   1210000 perm   792 sec   (1529 perm/sec)   p_kst 1.818529e-01   p_cons 9.966942e-04   p_joint 6.205785e-03

Joint ci ratio: 4.490851e-02	ci left: 6.067149e-03	ci right 6.346678e-03	k: 7571	n:1220000
Cons ci ratio: 1.123576e-01	ci left: 9.407091e-04	ci right 1.053485e-03	k: 1215	n:1220000
KS ci ratio: 7.527658e-03	ci left: 1.811692e-01	ci right 1.825389e-01	k: 221861	n:1220000
VIPR2   1220000 perm   803 sec   (1519 perm/sec)   p_kst 1.818533e-01   p_cons 9.959016e-04   p_joint 6.205738e-03

Joint ci ratio: 4.480261e-02	ci left: 6.046761e-03	ci right 6.324677e-03	k: 7607	n:1230000
Cons ci ratio: 1.118072e-01	ci left: 9.425437e-04	ci right 1.054949e-03	k: 1227	n:1230000
KS ci ratio: 7.495593e-03	ci left: 1.812275e-01	ci right 1.825918e-01	k: 223748	n:1230000
VIPR2   1230000 perm   814 sec   (1510 perm/sec)   p_kst 1.819089e-01   p_cons 9.975610e-04   p_joint 6.184553e-03

Joint ci ratio: 4.379564e-02	ci left: 6.278740e-03	ci right 6.560669e-03	k: 7959	n:1240000
Cons ci ratio: 1.114449e-01	ci left: 9.412140e-04	ci right 1.053073e-03	k: 1235	n:1240000
KS ci ratio: 7.464420e-03	ci left: 1.812657e-01	ci right 1.826245e-01	k: 225611	n:1240000
VIPR2   1240000 perm   826 sec   (1502 perm/sec)   p_kst 1.819444e-01   p_cons 9.959677e-04   p_joint 6.418548e-03

Joint ci ratio: 4.360970e-02	ci left: 6.282316e-03	ci right 6.563178e-03	k: 8027	n:1250000
Cons ci ratio: 1.107302e-01	ci left: 9.461287e-04	ci right 1.057804e-03	k: 1251	n:1250000
KS ci ratio: 7.434971e-03	ci left: 1.812496e-01	ci right 1.826030e-01	k: 227407	n:1250000
VIPR2   1250000 perm   837 sec   (1493 perm/sec)   p_kst 1.819256e-01   p_cons 1.000800e-03   p_joint 6.421600e-03

Joint ci ratio: 4.344772e-02	ci left: 6.279557e-03	ci right 6.559227e-03	k: 8087	n:1260000
Cons ci ratio: 1.102906e-01	ci left: 9.463369e-04	ci right 1.057565e-03	k: 1261	n:1260000
KS ci ratio: 7.405216e-03	ci left: 1.812601e-01	ci right 1.826081e-01	k: 229236	n:1260000
VIPR2   1260000 perm   849 sec   (1485 perm/sec)   p_kst 1.819333e-01   p_cons 1.000794e-03   p_joint 6.418254e-03

Joint ci ratio: 4.154259e-02	ci left: 6.817546e-03	ci right 7.107544e-03	k: 8841	n:1270000
Cons ci ratio: 1.096837e-01	ci left: 9.496059e-04	ci right 1.060564e-03	k: 1275	n:1270000
KS ci ratio: 7.377201e-03	ci left: 1.812145e-01	ci right 1.825570e-01	k: 230994	n:1270000
VIPR2   1270000 perm   860 sec   (1477 perm/sec)   p_kst 1.818850e-01   p_cons 1.003937e-03   p_joint 6.961417e-03

Joint ci ratio: 4.141422e-02	ci left: 6.806806e-03	ci right 7.095432e-03	k: 8896	n:1280000
Cons ci ratio: 1.093416e-01	ci left: 9.482659e-04	ci right 1.058700e-03	k: 1283	n:1280000
KS ci ratio: 7.349695e-03	ci left: 1.811618e-01	ci right 1.824990e-01	k: 232742	n:1280000
VIPR2   1280000 perm   872 sec   (1469 perm/sec)   p_kst 1.818297e-01   p_cons 1.002344e-03   p_joint 6.950000e-03

Joint ci ratio: 4.126615e-02	ci left: 6.803139e-03	ci right 7.090554e-03	k: 8960	n:1290000
Cons ci ratio: 1.088762e-01	ci left: 9.492094e-04	ci right 1.059252e-03	k: 1294	n:1290000
KS ci ratio: 7.321253e-03	ci left: 1.811603e-01	ci right 1.824923e-01	k: 234555	n:1290000
VIPR2   1290000 perm   883 sec   (1460 perm/sec)   p_kst 1.818256e-01   p_cons 1.003101e-03   p_joint 6.945736e-03

Joint ci ratio: 4.198809e-02	ci left: 6.520136e-03	ci right 6.800530e-03	k: 8657	n:1300000
Cons ci ratio: 1.085415e-01	ci left: 9.478943e-04	ci right 1.057425e-03	k: 1302	n:1300000
KS ci ratio: 7.292310e-03	ci left: 1.811926e-01	ci right 1.825195e-01	k: 236412	n:1300000
VIPR2   1300000 perm   895 sec   (1453 perm/sec)   p_kst 1.818554e-01   p_cons 1.001538e-03   p_joint 6.659231e-03

Joint ci ratio: 4.205277e-02	ci left: 6.450721e-03	ci right 6.728567e-03	k: 8631	n:1310000
Cons ci ratio: 1.082099e-01	ci left: 9.465998e-04	ci right 1.055626e-03	k: 1310	n:1310000
KS ci ratio: 7.265608e-03	ci left: 1.811467e-01	ci right 1.824684e-01	k: 238167	n:1310000
VIPR2   1310000 perm   907 sec   (1445 perm/sec)   p_kst 1.818069e-01   p_cons 1.000000e-03   p_joint 6.588550e-03

Joint ci ratio: 4.299909e-02	ci left: 6.122258e-03	ci right 6.392037e-03	k: 8258	n:1320000
Cons ci ratio: 1.078814e-01	ci left: 9.453254e-04	ci right 1.053853e-03	k: 1318	n:1320000
KS ci ratio: 7.237557e-03	ci left: 1.811689e-01	ci right 1.824856e-01	k: 240011	n:1320000
VIPR2   1320000 perm   918 sec   (1437 perm/sec)   p_kst 1.818265e-01   p_cons 9.984848e-04   p_joint 6.256061e-03

Joint ci ratio: 4.294520e-02	ci left: 6.091844e-03	ci right 6.359938e-03	k: 8279	n:1330000
Cons ci ratio: 1.073132e-01	ci left: 9.484608e-04	ci right 1.056739e-03	k: 1332	n:1330000
KS ci ratio: 7.208990e-03	ci left: 1.812252e-01	ci right 1.825371e-01	k: 241901	n:1330000
VIPR2   1330000 perm   931 sec   (1429 perm/sec)   p_kst 1.818805e-01   p_cons 1.001504e-03   p_joint 6.224812e-03

Joint ci ratio: 4.279048e-02	ci left: 6.090678e-03	ci right 6.357731e-03	k: 8339	n:1340000
Cons ci ratio: 1.070726e-01	ci left: 9.457402e-04	ci right 1.053450e-03	k: 1338	n:1340000
KS ci ratio: 7.181173e-03	ci left: 1.812636e-01	ci right 1.825707e-01	k: 243768	n:1340000
VIPR2   1340000 perm   943 sec   (1421 perm/sec)   p_kst 1.819164e-01   p_cons 9.985075e-04   p_joint 6.223134e-03

Joint ci ratio: 4.270654e-02	ci left: 6.069744e-03	ci right 6.335344e-03	k: 8372	n:1350000
Cons ci ratio: 1.065960e-01	ci left: 9.473862e-04	ci right 1.054773e-03	k: 1350	n:1350000
KS ci ratio: 7.153461e-03	ci left: 1.813102e-01	ci right 1.826126e-01	k: 245647	n:1350000
VIPR2   1350000 perm   955 sec   (1413 perm/sec)   p_kst 1.819607e-01   p_cons 1.000000e-03   p_joint 6.201481e-03

Joint ci ratio: 4.256707e-02	ci left: 6.065123e-03	ci right 6.329634e-03	k: 8427	n:1360000
Cons ci ratio: 1.062818e-01	ci left: 9.461458e-04	ci right 1.053056e-03	k: 1358	n:1360000
KS ci ratio: 7.126983e-03	ci left: 1.813181e-01	ci right 1.826156e-01	k: 247474	n:1360000
VIPR2   1360000 perm   967 sec   (1406 perm/sec)   p_kst 1.819662e-01   p_cons 9.985294e-04   p_joint 6.196324e-03

Joint ci ratio: 4.237872e-02	ci left: 6.075016e-03	ci right 6.338757e-03	k: 8502	n:1370000
Cons ci ratio: 1.058156e-01	ci left: 9.477665e-04	ci right 1.054361e-03	k: 1370	n:1370000
KS ci ratio: 7.102034e-03	ci left: 1.812740e-01	ci right 1.825667e-01	k: 249230	n:1370000
VIPR2   1370000 perm   980 sec   (1398 perm/sec)   p_kst 1.819197e-01   p_cons 1.000000e-03   p_joint 6.205839e-03

Joint ci ratio: 4.224492e-02	ci left: 6.069710e-03	ci right 6.332369e-03	k: 8556	n:1380000
Cons ci ratio: 1.055083e-01	ci left: 9.465425e-04	ci right 1.052671e-03	k: 1378	n:1380000
KS ci ratio: 7.075931e-03	ci left: 1.812900e-01	ci right 1.825780e-01	k: 251068	n:1380000
VIPR2   1380000 perm   992 sec   (1391 perm/sec)   p_kst 1.819333e-01   p_cons 9.985507e-04   p_joint 6.200000e-03

Joint ci ratio: 4.262850e-02	ci left: 5.917841e-03	ci right 6.176310e-03	k: 8404	n:1390000
Cons ci ratio: 1.049766e-01	ci left: 9.495397e-04	ci right 1.055435e-03	k: 1392	n:1390000
KS ci ratio: 7.050267e-03	ci left: 1.812992e-01	ci right 1.825827e-01	k: 252897	n:1390000
VIPR2   1390000 perm   1004 sec   (1384 perm/sec)   p_kst 1.819403e-01   p_cons 1.001439e-03   p_joint 6.046043e-03

Joint ci ratio: 4.248726e-02	ci left: 5.915145e-03	ci right 6.172619e-03	k: 8460	n:1400000
Cons ci ratio: 1.046018e-01	ci left: 9.497129e-04	ci right 1.055226e-03	k: 1402	n:1400000
KS ci ratio: 7.023853e-03	ci left: 1.813519e-01	ci right 1.826309e-01	k: 254787	n:1400000
VIPR2   1400000 perm   1017 sec   (1376 perm/sec)   p_kst 1.819907e-01   p_cons 1.001429e-03   p_joint 6.042857e-03

Joint ci ratio: 4.236494e-02	ci left: 5.907576e-03	ci right 6.163963e-03	k: 8509	n:1410000
Cons ci ratio: 1.041205e-01	ci left: 9.519567e-04	ci right 1.057202e-03	k: 1415	n:1410000
KS ci ratio: 6.998467e-03	ci left: 1.813726e-01	ci right 1.826471e-01	k: 256633	n:1410000
VIPR2   1410000 perm   1030 sec   (1369 perm/sec)   p_kst 1.820092e-01   p_cons 1.003546e-03   p_joint 6.034752e-03

Joint ci ratio: 4.234332e-02	ci left: 5.872242e-03	ci right 6.126962e-03	k: 8518	n:1420000
Cons ci ratio: 1.037912e-01	ci left: 9.514260e-04	ci right 1.056260e-03	k: 1424	n:1420000
KS ci ratio: 6.973799e-03	ci left: 1.813741e-01	ci right 1.826441e-01	k: 258452	n:1420000
VIPR2   1420000 perm   1042 sec   (1363 perm/sec)   p_kst 1.820085e-01   p_cons 1.002817e-03   p_joint 5.998592e-03

Joint ci ratio: 4.287396e-02	ci left: 5.687261e-03	ci right 5.937124e-03	k: 8310	n:1430000
Cons ci ratio: 1.031773e-01	ci left: 9.563532e-04	ci right 1.061069e-03	k: 1441	n:1430000
KS ci ratio: 6.948802e-03	ci left: 1.814007e-01	ci right 1.826663e-01	k: 260307	n:1430000
VIPR2   1430000 perm   1055 sec   (1355 perm/sec)   p_kst 1.820329e-01   p_cons 1.007692e-03   p_joint 5.811189e-03

Joint ci ratio: 4.408903e-02	ci left: 5.339329e-03	ci right 5.580722e-03	k: 7861	n:1440000
Cons ci ratio: 1.028569e-01	ci left: 9.558008e-04	ci right 1.060112e-03	k: 1450	n:1440000
KS ci ratio: 6.925365e-03	ci left: 1.813715e-01	ci right 1.826326e-01	k: 262082	n:1440000
VIPR2   1440000 perm   1068 sec   (1348 perm/sec)   p_kst 1.820014e-01   p_cons 1.006944e-03   p_joint 5.459028e-03

Joint ci ratio: 4.395237e-02	ci left: 5.335927e-03	ci right 5.576400e-03	k: 7910	n:1450000
Cons ci ratio: 1.026803e-01	ci left: 9.525686e-04	ci right 1.056338e-03	k: 1455	n:1450000
KS ci ratio: 6.902067e-03	ci left: 1.813468e-01	ci right 1.826035e-01	k: 263863	n:1450000
VIPR2   1450000 perm   1081 sec   (1341 perm/sec)   p_kst 1.819745e-01   p_cons 1.003448e-03   p_joint 5.455172e-03

Joint ci ratio: 4.377551e-02	ci left: 5.342735e-03	ci right 5.582521e-03	k: 7974	n:1460000
Cons ci ratio: 1.022597e-01	ci left: 9.540528e-04	ci right 1.057532e-03	k: 1467	n:1460000
KS ci ratio: 6.878796e-03	ci left: 1.813313e-01	ci right 1.825836e-01	k: 265657	n:1460000
VIPR2   1460000 perm   1094 sec   (1334 perm/sec)   p_kst 1.819568e-01   p_cons 1.004795e-03   p_joint 5.461644e-03

Joint ci ratio: 4.372949e-02	ci left: 5.317826e-03	ci right 5.556238e-03	k: 7991	n:1470000
Cons ci ratio: 1.019477e-01	ci left: 9.535287e-04	ci right 1.056617e-03	k: 1476	n:1470000
KS ci ratio: 6.855744e-03	ci left: 1.813168e-01	ci right 1.825648e-01	k: 267452	n:1470000
VIPR2   1470000 perm   1108 sec   (1327 perm/sec)   p_kst 1.819401e-01   p_cons 1.004082e-03   p_joint 5.436054e-03

Joint ci ratio: 4.384906e-02	ci left: 5.253155e-03	ci right 5.489327e-03	k: 7948	n:1480000
Cons ci ratio: 1.017414e-01	ci left: 9.510367e-04	ci right 1.053635e-03	k: 1482	n:1480000
KS ci ratio: 6.833341e-03	ci left: 1.812842e-01	ci right 1.825279e-01	k: 269220	n:1480000
VIPR2   1480000 perm   1121 sec   (1320 perm/sec)   p_kst 1.819054e-01   p_cons 1.001351e-03   p_joint 5.370270e-03

Joint ci ratio: 4.382768e-02	ci left: 5.223208e-03	ci right 5.457916e-03	k: 7956	n:1490000
Cons ci ratio: 1.014341e-01	ci left: 9.505407e-04	ci right 1.052757e-03	k: 1491	n:1490000
KS ci ratio: 6.810450e-03	ci left: 1.812829e-01	ci right 1.825224e-01	k: 271034	n:1490000
VIPR2   1490000 perm   1135 sec   (1313 perm/sec)   p_kst 1.819020e-01   p_cons 1.000671e-03   p_joint 5.339597e-03

Joint ci ratio: 4.366601e-02	ci left: 5.227290e-03	ci right 5.461293e-03	k: 8015	n:1500000
Cons ci ratio: 1.011971e-01	ci left: 9.487521e-04	ci right 1.050524e-03	k: 1498	n:1500000
KS ci ratio: 6.786905e-03	ci left: 1.813202e-01	ci right 1.825557e-01	k: 272906	n:1500000
VIPR2   1500000 perm   1148 sec   (1306 perm/sec)   p_kst 1.819373e-01   p_cons 9.986667e-04   p_joint 5.343333e-03

Joint ci ratio: 4.359304e-02	ci left: 5.210357e-03	ci right 5.443203e-03	k: 8042	n:1510000
Cons ci ratio: 1.006611e-01	ci left: 9.527976e-04	ci right 1.054430e-03	k: 1514	n:1510000
KS ci ratio: 6.766056e-03	ci left: 1.812493e-01	ci right 1.824804e-01	k: 274615	n:1510000
VIPR2   1510000 perm   1161 sec   (1300 perm/sec)   p_kst 1.818642e-01   p_cons 1.002649e-03   p_joint 5.325828e-03

Joint ci ratio: 4.344473e-02	ci left: 5.211868e-03	ci right 5.443970e-03	k: 8097	n:1520000
Cons ci ratio: 1.003635e-01	ci left: 9.523014e-04	ci right 1.053563e-03	k: 1523	n:1520000
KS ci ratio: 6.742848e-03	ci left: 1.812916e-01	ci right 1.825188e-01	k: 276495	n:1520000
VIPR2   1520000 perm   1175 sec   (1294 perm/sec)   p_kst 1.819046e-01   p_cons 1.001974e-03   p_joint 5.326974e-03

Joint ci ratio: 4.355919e-02	ci left: 5.150648e-03	ci right 5.380643e-03	k: 8055	n:1530000
Cons ci ratio: 1.000684e-01	ci left: 9.518121e-04	ci right 1.052706e-03	k: 1532	n:1530000
KS ci ratio: 6.720482e-03	ci left: 1.813066e-01	ci right 1.825299e-01	k: 278334	n:1530000
VIPR2   1530000 perm   1188 sec   (1287 perm/sec)   p_kst 1.819176e-01   p_cons 1.001307e-03   p_joint 5.264706e-03

Joint ci ratio: 4.345973e-02	ci left: 5.140966e-03	ci right 5.369991e-03	k: 8092	n:1540000
Cons ci ratio: 9.993835e-02	ci left: 9.481639e-04	ci right 1.048533e-03	k: 1536	n:1540000
KS ci ratio: 6.699316e-03	ci left: 1.812780e-01	ci right 1.824972e-01	k: 280106	n:1540000
VIPR2   1540000 perm   1202 sec   (1281 perm/sec)   p_kst 1.818870e-01   p_cons 9.974026e-04   p_joint 5.254545e-03

Outputting figure to mutsig2_images.part000000000189/VIPR2.4_1369_1540000_0.18189_0.0009974_0.0052545.png
                gene_name: VIPR2
               theta_stop: 0.100 
                    nperm: 1540000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.00100 
      ci_cons_bounds_left: 0.00095 
     ci_cons_bounds_right: 0.0010 
                  p_joint: 0.0053 
     ci_joint_bounds_left: 0.0051 
    ci_joint_bounds_right: 0.0054 

Current progress: 36 percent done.
VIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
VIT   10000 perm   2 sec   (5442 perm/sec)   p_kst 8.169000e-01   p_cons 1.769000e-01   p_joint 5.481000e-01

Outputting figure to mutsig2_images.part000000000189/VIT.4_2267_10000_0.8169_0.1769_0.5481.png
                gene_name: VIT
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 38 percent done.
VNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
Cons ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
KS ci ratio: 1.205944e-02	ci left: 9.079222e-01	ci right 9.190356e-01	k: 9136	n:10000
VNN1   10000 perm   2 sec   (6180 perm/sec)   p_kst 9.136000e-01   p_cons 3.004000e-01   p_joint 7.597000e-01

Outputting figure to mutsig2_images.part000000000189/VNN1.4_1570_10000_0.9136_0.3004_0.7597.png
                gene_name: VNN1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 39 percent done.
VNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
VNN2   10000 perm   2 sec   (5738 perm/sec)   p_kst 6.870000e-02   p_cons 9.578000e-01   p_joint 2.280000e-01

Joint ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
Cons ci ratio: 5.620381e-03	ci left: 9.577594e-01	ci right 9.632057e-01	k: 19211	n:20000
KS ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
VNN2   20000 perm   4 sec   (5172 perm/sec)   p_kst 6.695000e-02   p_cons 9.605500e-01   p_joint 1.360000e-01

Joint ci ratio: 5.452482e-02	ci left: 1.429447e-01	ci right 1.509904e-01	k: 4408	n:30000
Cons ci ratio: 4.479238e-03	ci left: 9.601170e-01	ci right 9.644595e-01	k: 28870	n:30000
KS ci ratio: 8.396303e-02	ci left: 6.488241e-02	ci right 7.060165e-02	k: 2031	n:30000
VNN2   30000 perm   6 sec   (4932 perm/sec)   p_kst 6.770000e-02   p_cons 9.623333e-01   p_joint 1.469333e-01

Outputting figure to mutsig2_images.part000000000189/VNN2.4_1591_30000_0.0677_0.96233_0.14693.png
                gene_name: VNN2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 41 percent done.
VPS4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 8.828742e-03	ci left: 9.474185e-01	ci right 9.559159e-01	k: 9518	n:10000
VPS4B   10000 perm   2 sec   (5889 perm/sec)   p_kst 9.518000e-01   p_cons 1.380000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS4B.4_1379_10000_0.9518_0.138_1.png
                gene_name: VPS4B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
VPS54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
Cons ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
KS ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
VPS54   10000 perm   2 sec   (5613 perm/sec)   p_kst 6.137000e-01   p_cons 7.390000e-02   p_joint 2.009000e-01

Joint ci ratio: 3.865370e-02	ci left: 3.329857e-01	ci right 3.461610e-01	k: 6791	n:20000
Cons ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
KS ci ratio: 2.201360e-02	ci left: 6.064093e-01	ci right 6.199577e-01	k: 12264	n:20000
VPS54   20000 perm   4 sec   (5023 perm/sec)   p_kst 6.132000e-01   p_cons 6.495000e-02   p_joint 3.395500e-01

Joint ci ratio: 2.857835e-02	ci left: 3.798873e-01	ci right 3.909349e-01	k: 11562	n:30000
Cons ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
KS ci ratio: 1.790621e-02	ci left: 6.094662e-01	ci right 6.205116e-01	k: 18450	n:30000
VPS54   30000 perm   6 sec   (4801 perm/sec)   p_kst 6.150000e-01   p_cons 6.663333e-02   p_joint 3.854000e-01

Outputting figure to mutsig2_images.part000000000189/VPS54.4_3022_30000_0.615_0.066633_0.3854.png
                gene_name: VPS54
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 44 percent done.
VPS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
Cons ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
VPS8   10000 perm   2 sec   (5141 perm/sec)   p_kst 4.140000e-02   p_cons 4.825000e-01   p_joint 9.300000e-02

Joint ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
Cons ci ratio: 2.827361e-02	ci left: 4.830987e-01	ci right 4.970042e-01	k: 9801	n:20000
KS ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
VPS8   20000 perm   4 sec   (4599 perm/sec)   p_kst 4.025000e-02   p_cons 4.900500e-01   p_joint 6.255000e-02

Joint ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
Cons ci ratio: 2.321947e-02	ci left: 4.814954e-01	ci right 4.928404e-01	k: 14615	n:30000
KS ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
VPS8   30000 perm   7 sec   (4398 perm/sec)   p_kst 4.203333e-02   p_cons 4.871667e-01   p_joint 6.950000e-02

Joint ci ratio: 6.537315e-02	ci left: 7.977245e-02	ci right 8.518835e-02	k: 3298	n:40000
Cons ci ratio: 2.022057e-02	ci left: 4.794913e-01	ci right 4.893110e-01	k: 19376	n:40000
KS ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
VPS8   40000 perm   9 sec   (4267 perm/sec)   p_kst 4.055000e-02   p_cons 4.844000e-01   p_joint 8.245000e-02

Outputting figure to mutsig2_images.part000000000189/VPS8.4_4471_40000_0.04055_0.4844_0.08245.png
                gene_name: VPS8
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 46 percent done.
VRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
KS ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
VRK3   10000 perm   2 sec   (5867 perm/sec)   p_kst 8.613000e-01   p_cons 6.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VRK3.4_1473_10000_0.8613_0.6685_1.png
                gene_name: VRK3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
VSIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
Cons ci ratio: 1.447860e-02	ci left: 8.734700e-01	ci right 8.863078e-01	k: 8800	n:10000
KS ci ratio: 7.479096e-02	ci left: 2.073764e-01	ci right 2.235897e-01	k: 2154	n:10000
VSIG1   10000 perm   2 sec   (6275 perm/sec)   p_kst 2.154000e-01   p_cons 8.800000e-01   p_joint 4.280000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG1.4_1304_10000_0.2154_0.88_0.428.png
                gene_name: VSIG1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 49 percent done.
VSIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
Cons ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
KS ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
VSIG4   10000 perm   2 sec   (6416 perm/sec)   p_kst 2.158000e-01   p_cons 3.508000e-01   p_joint 3.719000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG4.4_1236_10000_0.2158_0.3508_0.3719.png
                gene_name: VSIG4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 51 percent done.
VSTM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
KS ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
VSTM2A   10000 perm   2 sec   (6086 perm/sec)   p_kst 5.243000e-01   p_cons 6.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VSTM2A.4_731_10000_0.5243_0.6812_1.png
                gene_name: VSTM2A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
VTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
VTA1   10000 perm   2 sec   (5936 perm/sec)   p_kst 3.298000e-01   p_cons 4.136000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000189/VTA1.4_956_10000_0.3298_0.4136_0.4014.png
                gene_name: VTA1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 54 percent done.
VWA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
Cons ci ratio: 4.008997e-02	ci left: 4.788572e-01	ci right 4.985494e-01	k: 4887	n:10000
KS ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
VWA5A   10000 perm   2 sec   (5411 perm/sec)   p_kst 7.006000e-01   p_cons 4.887000e-01   p_joint 8.134000e-01

Outputting figure to mutsig2_images.part000000000189/VWA5A.4_2433_10000_0.7006_0.4887_0.8134.png
                gene_name: VWA5A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
VWC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
Cons ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
KS ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
VWC2L   10000 perm   1 sec   (6675 perm/sec)   p_kst 2.012000e-01   p_cons 4.391000e-01   p_joint 3.535000e-01

Outputting figure to mutsig2_images.part000000000189/VWC2L.4_681_10000_0.2012_0.4391_0.3535.png
                gene_name: VWC2L
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 57 percent done.
WASF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
Cons ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
WASF3   10000 perm   2 sec   (5722 perm/sec)   p_kst 2.326000e-01   p_cons 1.729000e-01   p_joint 1.537000e-01

Outputting figure to mutsig2_images.part000000000189/WASF3.4_1541_10000_0.2326_0.1729_0.1537.png
                gene_name: WASF3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 59 percent done.
VN1R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
KS ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
VN1R4   10000 perm   2 sec   (6565 perm/sec)   p_kst 6.099000e-01   p_cons 9.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VN1R4.3_909_10000_0.6099_0.9018_1.png
                gene_name: VN1R4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
VPREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
VPREB1   10000 perm   1 sec   (6707 perm/sec)   p_kst 6.820000e-02   p_cons 7.828000e-01   p_joint 3.097000e-01

Joint ci ratio: 5.531551e-02	ci left: 1.951185e-01	ci right 2.062687e-01	k: 4013	n:20000
Cons ci ratio: 1.470816e-02	ci left: 7.744962e-01	ci right 7.860222e-01	k: 15606	n:20000
KS ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
VPREB1   20000 perm   3 sec   (5869 perm/sec)   p_kst 6.950000e-02   p_cons 7.803000e-01   p_joint 2.006500e-01

Joint ci ratio: 4.937318e-02	ci left: 1.693290e-01	ci right 1.779343e-01	k: 5208	n:30000
Cons ci ratio: 1.198578e-02	ci left: 7.762428e-01	ci right 7.856361e-01	k: 23429	n:30000
KS ci ratio: 8.088809e-02	ci left: 6.965589e-02	ci right 7.556053e-02	k: 2177	n:30000
VPREB1   30000 perm   5 sec   (5568 perm/sec)   p_kst 7.256667e-02   p_cons 7.809667e-01   p_joint 1.736000e-01

Outputting figure to mutsig2_images.part000000000189/VPREB1.3_446_30000_0.072567_0.78097_0.1736.png
                gene_name: VPREB1
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
VPS28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
Cons ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
VPS28   10000 perm   2 sec   (6498 perm/sec)   p_kst 1   p_cons 3.596000e-01   p_joint 6.239000e-01

Outputting figure to mutsig2_images.part000000000189/VPS28.3_816_10000_1_0.3596_0.6239.png
                gene_name: VPS28
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 64 percent done.
VPS33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
VPS33B   10000 perm   2 sec   (5956 perm/sec)   p_kst 1.253000e-01   p_cons 1.869000e-01   p_joint 1.510000e-01

Joint ci ratio: 6.661047e-02	ci left: 1.426613e-01	ci right 1.525414e-01	k: 2951	n:20000
Cons ci ratio: 6.026635e-02	ci left: 1.693119e-01	ci right 1.798828e-01	k: 3491	n:20000
KS ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
VPS33B   20000 perm   4 sec   (5310 perm/sec)   p_kst 1.283500e-01   p_cons 1.745500e-01   p_joint 1.475500e-01

Outputting figure to mutsig2_images.part000000000189/VPS33B.3_1946_20000_0.12835_0.17455_0.14755.png
                gene_name: VPS33B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 66 percent done.
VPS45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
VPS45   10000 perm   2 sec   (6211 perm/sec)   p_kst 3.260000e-01   p_cons 7.240000e-02   p_joint 2.756000e-01

Joint ci ratio: 3.562116e-02	ci left: 3.703763e-01	ci right 3.838594e-01	k: 7542	n:20000
Cons ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
KS ci ratio: 3.929574e-02	ci left: 3.256721e-01	ci right 3.387767e-01	k: 6644	n:20000
VPS45   20000 perm   4 sec   (5466 perm/sec)   p_kst 3.322000e-01   p_cons 7.525000e-02   p_joint 3.771000e-01

Outputting figure to mutsig2_images.part000000000189/VPS45.3_1773_20000_0.3322_0.07525_0.3771.png
                gene_name: VPS45
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 67 percent done.
VPS53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
VPS53   10000 perm   2 sec   (5572 perm/sec)   p_kst 8.200000e-02   p_cons 9.364000e-01   p_joint 2.144000e-01

Joint ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
Cons ci ratio: 7.658995e-03	ci left: 9.254552e-01	ci right 9.326195e-01	k: 18582	n:20000
KS ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
VPS53   20000 perm   4 sec   (5000 perm/sec)   p_kst 8.275000e-02   p_cons 9.291000e-01   p_joint 1.767500e-01

Outputting figure to mutsig2_images.part000000000189/VPS53.3_2602_20000_0.08275_0.9291_0.17675.png
                gene_name: VPS53
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
VSIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
VSIG2   10000 perm   1 sec   (6922 perm/sec)   p_kst 8.380000e-01   p_cons 3.878000e-01   p_joint 6.112000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG2.3_1012_10000_0.838_0.3878_0.6112.png
                gene_name: VSIG2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
VTCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
Cons ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
KS ci ratio: 3.241811e-02	ci left: 5.840980e-01	ci right 6.034473e-01	k: 5938	n:10000
VTCN1   10000 perm   2 sec   (6592 perm/sec)   p_kst 5.938000e-01   p_cons 6.090000e-02   p_joint 2.941000e-01

Joint ci ratio: 4.805445e-02	ci left: 2.436138e-01	ci right 2.556591e-01	k: 4992	n:20000
Cons ci ratio: 1.078120e-01	ci left: 5.864794e-02	ci right 6.538009e-02	k: 1239	n:20000
KS ci ratio: 2.276077e-02	ci left: 5.904141e-01	ci right 6.040576e-01	k: 11945	n:20000
VTCN1   20000 perm   3 sec   (5838 perm/sec)   p_kst 5.972500e-01   p_cons 6.195000e-02   p_joint 2.496000e-01

Joint ci ratio: 5.153066e-02	ci left: 1.575170e-01	ci right 1.658819e-01	k: 4850	n:30000
Cons ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
KS ci ratio: 1.853876e-02	ci left: 5.928601e-01	ci right 6.039875e-01	k: 17953	n:30000
VTCN1   30000 perm   5 sec   (5544 perm/sec)   p_kst 5.984333e-01   p_cons 6.213333e-02   p_joint 1.616667e-01

Outputting figure to mutsig2_images.part000000000189/VTCN1.3_869_30000_0.59843_0.062133_0.16167.png
                gene_name: VTCN1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 72 percent done.
VWA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
VWA3A   10000 perm   2 sec   (5422 perm/sec)   p_kst 2.469000e-01   p_cons 2.359000e-01   p_joint 2.869000e-01

Outputting figure to mutsig2_images.part000000000189/VWA3A.3_3687_10000_0.2469_0.2359_0.2869.png
                gene_name: VWA3A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 74 percent done.
VWC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
VWC2   10000 perm   2 sec   (6440 perm/sec)   p_kst 7.300000e-03   p_cons 1.378000e-01   p_joint 1.190000e-02

Joint ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
Cons ci ratio: 6.931891e-02	ci left: 1.330508e-01	ci right 1.426547e-01	k: 2756	n:20000
KS ci ratio: 3.126171e-01	ci left: 6.581657e-03	ci right 9.064647e-03	k: 155	n:20000
VWC2   20000 perm   4 sec   (5700 perm/sec)   p_kst 7.750000e-03   p_cons 1.378000e-01   p_joint 1.315000e-02

Joint ci ratio: 2.011555e-01	ci left: 1.124182e-02	ci right 1.378722e-02	k: 374	n:30000
Cons ci ratio: 5.757567e-02	ci left: 1.299666e-01	ci right 1.377045e-01	k: 4014	n:30000
KS ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
VWC2   30000 perm   6 sec   (5382 perm/sec)   p_kst 7.900000e-03   p_cons 1.338000e-01   p_joint 1.246667e-02

Joint ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
Cons ci ratio: 5.033722e-02	ci left: 1.283262e-01	ci right 1.349774e-01	k: 5265	n:40000
KS ci ratio: 2.148943e-01	ci left: 7.363245e-03	ci right 9.159242e-03	k: 329	n:40000
VWC2   40000 perm   8 sec   (5182 perm/sec)   p_kst 8.225000e-03   p_cons 1.316250e-01   p_joint 1.252500e-02

Joint ci ratio: 1.612591e-01	ci left: 1.073749e-02	ci right 1.263984e-02	k: 583	n:50000
Cons ci ratio: 4.511585e-02	ci left: 1.282125e-01	ci right 1.341503e-01	k: 6558	n:50000
KS ci ratio: 1.860528e-01	ci left: 7.980916e-03	ci right 9.636869e-03	k: 439	n:50000
VWC2   50000 perm   10 sec   (5033 perm/sec)   p_kst 8.780000e-03   p_cons 1.311600e-01   p_joint 1.166000e-02

Joint ci ratio: 1.422396e-01	ci left: 1.161024e-02	ci right 1.340404e-02	k: 749	n:60000
Cons ci ratio: 4.123868e-02	ci left: 1.281777e-01	ci right 1.335914e-01	k: 7852	n:60000
KS ci ratio: 1.706595e-01	ci left: 7.972428e-03	ci right 9.475671e-03	k: 522	n:60000
VWC2   60000 perm   12 sec   (4902 perm/sec)   p_kst 8.700000e-03   p_cons 1.308667e-01   p_joint 1.248333e-02

Joint ci ratio: 1.293868e-01	ci left: 1.210481e-02	ci right 1.379306e-02	k: 905	n:70000
Cons ci ratio: 3.821283e-02	ci left: 1.281828e-01	ci right 1.331907e-01	k: 9147	n:70000
KS ci ratio: 1.549754e-01	ci left: 8.354864e-03	ci right 9.771995e-03	k: 633	n:70000
VWC2   70000 perm   15 sec   (4789 perm/sec)   p_kst 9.042857e-03   p_cons 1.306714e-01   p_joint 1.292857e-02

Joint ci ratio: 1.220755e-01	ci left: 1.194764e-02	ci right 1.351299e-02	k: 1017	n:80000
Cons ci ratio: 3.570726e-02	ci left: 1.285823e-01	ci right 1.332695e-01	k: 10473	n:80000
KS ci ratio: 1.454300e-01	ci left: 8.345128e-03	ci right 9.665848e-03	k: 719	n:80000
VWC2   80000 perm   17 sec   (4695 perm/sec)   p_kst 8.987500e-03   p_cons 1.309125e-01   p_joint 1.271250e-02

Joint ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
Cons ci ratio: 3.367049e-02	ci left: 1.286807e-01	ci right 1.330987e-01	k: 11779	n:90000
KS ci ratio: 1.376281e-01	ci left: 8.318183e-03	ci right 9.558223e-03	k: 803	n:90000
VWC2   90000 perm   20 sec   (4596 perm/sec)   p_kst 8.922222e-03   p_cons 1.308778e-01   p_joint 1.264444e-02

Joint ci ratio: 1.077600e-01	ci left: 1.235575e-02	ci right 1.377270e-02	k: 1305	n:100000
Cons ci ratio: 3.193406e-02	ci left: 1.288549e-01	ci right 1.330465e-01	k: 13094	n:100000
KS ci ratio: 1.294253e-01	ci left: 8.501364e-03	ci right 9.687372e-03	k: 908	n:100000
VWC2   100000 perm   22 sec   (4503 perm/sec)   p_kst 9.080000e-03   p_cons 1.309400e-01   p_joint 1.305000e-02

Joint ci ratio: 1.028395e-01	ci left: 1.236550e-02	ci right 1.371490e-02	k: 1433	n:110000
Cons ci ratio: 3.045342e-02	ci left: 1.289120e-01	ci right 1.329075e-01	k: 14399	n:110000
KS ci ratio: 1.230858e-01	ci left: 8.573705e-03	ci right 9.706947e-03	k: 1004	n:110000
VWC2   110000 perm   25 sec   (4418 perm/sec)   p_kst 9.127273e-03   p_cons 1.309000e-01   p_joint 1.302727e-02

Joint ci ratio: 9.885797e-02	ci left: 1.229356e-02	ci right 1.358014e-02	k: 1551	n:120000
Cons ci ratio: 2.920411e-02	ci left: 1.286320e-01	ci right 1.324525e-01	k: 15664	n:120000
KS ci ratio: 1.171129e-01	ci left: 8.707988e-03	ci right 9.799260e-03	k: 1109	n:120000
VWC2   120000 perm   28 sec   (4336 perm/sec)   p_kst 9.241667e-03   p_cons 1.305333e-01   p_joint 1.292500e-02

Joint ci ratio: 9.389188e-02	ci left: 1.260916e-02	ci right 1.385884e-02	k: 1719	n:130000
Cons ci ratio: 2.809595e-02	ci left: 1.284057e-01	ci right 1.320724e-01	k: 16930	n:130000
KS ci ratio: 1.125894e-01	ci left: 8.718039e-03	ci right 9.765566e-03	k: 1200	n:130000
VWC2   130000 perm   31 sec   (4261 perm/sec)   p_kst 9.230769e-03   p_cons 1.302308e-01   p_joint 1.322308e-02

Joint ci ratio: 9.421453e-02	ci left: 1.163848e-02	ci right 1.279614e-02	k: 1709	n:140000
Cons ci ratio: 2.714621e-02	ci left: 1.278732e-01	ci right 1.313993e-01	k: 18148	n:140000
KS ci ratio: 1.088933e-01	ci left: 8.671747e-03	ci right 9.677311e-03	k: 1283	n:140000
VWC2   140000 perm   33 sec   (4187 perm/sec)   p_kst 9.164286e-03   p_cons 1.296286e-01   p_joint 1.220714e-02

Joint ci ratio: 9.135218e-02	ci left: 1.157237e-02	ci right 1.268661e-02	k: 1818	n:150000
Cons ci ratio: 2.622214e-02	ci left: 1.279638e-01	ci right 1.313705e-01	k: 19449	n:150000
KS ci ratio: 1.053446e-01	ci left: 8.664578e-03	ci right 9.634537e-03	k: 1371	n:150000
VWC2   150000 perm   36 sec   (4118 perm/sec)   p_kst 9.140000e-03   p_cons 1.296600e-01   p_joint 1.212000e-02

Joint ci ratio: 8.871248e-02	ci left: 1.152111e-02	ci right 1.259668e-02	k: 1928	n:160000
Cons ci ratio: 2.540754e-02	ci left: 1.278584e-01	ci right 1.311550e-01	k: 20720	n:160000
KS ci ratio: 1.022631e-01	ci left: 8.634405e-03	ci right 9.571013e-03	k: 1455	n:160000
VWC2   160000 perm   40 sec   (4050 perm/sec)   p_kst 9.093750e-03   p_cons 1.295000e-01   p_joint 1.205000e-02

Joint ci ratio: 9.303427e-02	ci left: 9.854210e-03	ci right 1.082142e-02	k: 1756	n:170000
Cons ci ratio: 2.464319e-02	ci left: 1.279600e-01	ci right 1.311585e-01	k: 22024	n:170000
KS ci ratio: 9.882372e-02	ci left: 8.717166e-03	ci right 9.629103e-03	k: 1558	n:170000
VWC2   170000 perm   43 sec   (3985 perm/sec)   p_kst 9.164706e-03   p_cons 1.295529e-01   p_joint 1.032941e-02

Outputting figure to mutsig2_images.part000000000189/VWC2.3_990_170000_0.0091647_0.12955_0.010329.png
                gene_name: VWC2
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0099 
    ci_joint_bounds_right: 0.011 

Current progress: 75 percent done.
WARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
KS ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
WARS   10000 perm   2 sec   (6144 perm/sec)   p_kst 4.412000e-01   p_cons 5.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/WARS.3_1456_10000_0.4412_0.5352_1.png
                gene_name: WARS
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
WAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
KS ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
WAS   10000 perm   2 sec   (6310 perm/sec)   p_kst 2.234000e-01   p_cons 3.910000e-02   p_joint 4.200000e-02

Joint ci ratio: 9.917709e-02	ci left: 6.884579e-02	ci right 7.607910e-02	k: 1448	n:20000
Cons ci ratio: 1.287420e-01	ci left: 4.144132e-02	ci right 4.719210e-02	k: 885	n:20000
KS ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
WAS   20000 perm   4 sec   (5591 perm/sec)   p_kst 2.302500e-01   p_cons 4.425000e-02   p_joint 7.240000e-02

Joint ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
Cons ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
KS ci ratio: 4.159388e-02	ci left: 2.236594e-01	ci right 2.331933e-01	k: 6852	n:30000
WAS   30000 perm   6 sec   (5291 perm/sec)   p_kst 2.284000e-01   p_cons 4.343333e-02   p_joint 5.730000e-02

Joint ci ratio: 8.293185e-02	ci left: 5.070198e-02	ci right 5.511321e-02	k: 2115	n:40000
Cons ci ratio: 9.122405e-02	ci left: 4.210859e-02	ci right 4.615793e-02	k: 1764	n:40000
KS ci ratio: 3.618656e-02	ci left: 2.227037e-01	ci right 2.309360e-01	k: 9072	n:40000
WAS   40000 perm   8 sec   (5098 perm/sec)   p_kst 2.268000e-01   p_cons 4.410000e-02   p_joint 5.287500e-02

Outputting figure to mutsig2_images.part000000000189/WAS.3_1557_40000_0.2268_0.0441_0.052875.png
                gene_name: WAS
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 79 percent done.
VIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
VIM   10000 perm   1 sec   (6774 perm/sec)   p_kst 6.882000e-01   p_cons 9.820000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.445036e-02	ci left: 9.312830e-02	ci right 1.013892e-01	k: 1944	n:20000
KS ci ratio: 1.865033e-02	ci left: 6.818789e-01	ci right 6.947663e-01	k: 13767	n:20000
VIM   20000 perm   3 sec   (5952 perm/sec)   p_kst 6.883500e-01   p_cons 9.720000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VIM.2_1437_20000_0.68835_0.0972_1.png
                gene_name: VIM
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
VLDLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
VLDLR   10000 perm   2 sec   (5881 perm/sec)   p_kst 9.891000e-01   p_cons 8.500000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
KS ci ratio: 2.778431e-03	ci left: 9.886293e-01	ci right 9.914255e-01	k: 19802	n:20000
VLDLR   20000 perm   4 sec   (5212 perm/sec)   p_kst 9.901000e-01   p_cons 8.465000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VLDLR.2_2698_20000_0.9901_0.08465_1.png
                gene_name: VLDLR
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
VPS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
VPS11   10000 perm   2 sec   (5869 perm/sec)   p_kst 3.140000e-02   p_cons 2.500000e-02   p_joint 1.940000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 1.716948e-01	ci left: 2.321577e-02	ci right 2.762368e-02	k: 507	n:20000
KS ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
VPS11   20000 perm   4 sec   (5227 perm/sec)   p_kst 2.955000e-02   p_cons 2.535000e-02   p_joint 6.750000e-03

Joint ci ratio: 1.707387e-01	ci left: 1.579092e-02	ci right 1.877029e-02	k: 517	n:30000
Cons ci ratio: 1.393472e-01	ci left: 2.390657e-02	ci right 2.751941e-02	k: 770	n:30000
KS ci ratio: 1.288374e-01	ci left: 2.800174e-02	ci right 3.188999e-02	k: 897	n:30000
VPS11   30000 perm   6 sec   (4981 perm/sec)   p_kst 2.990000e-02   p_cons 2.566667e-02   p_joint 1.723333e-02

Joint ci ratio: 1.398065e-01	ci left: 1.792597e-02	ci right 2.064446e-02	k: 770	n:40000
Cons ci ratio: 1.201400e-01	ci left: 2.436542e-02	ci right 2.750392e-02	k: 1036	n:40000
KS ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
VPS11   40000 perm   8 sec   (4816 perm/sec)   p_kst 3.032500e-02   p_cons 2.590000e-02   p_joint 1.925000e-02

Joint ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
Cons ci ratio: 1.067926e-01	ci left: 2.483697e-02	ci right 2.765839e-02	k: 1311	n:50000
KS ci ratio: 9.937633e-02	ci left: 2.867823e-02	ci right 3.169664e-02	k: 1508	n:50000
VPS11   50000 perm   11 sec   (4690 perm/sec)   p_kst 3.016000e-02   p_cons 2.622000e-02   p_joint 1.948000e-02

Joint ci ratio: 1.207908e-01	ci left: 1.620708e-02	ci right 1.830665e-02	k: 1034	n:60000
Cons ci ratio: 9.833797e-02	ci left: 2.452983e-02	ci right 2.708298e-02	k: 1547	n:60000
KS ci ratio: 9.079031e-02	ci left: 2.876357e-02	ci right 3.151546e-02	k: 1807	n:60000
VPS11   60000 perm   13 sec   (4588 perm/sec)   p_kst 3.011667e-02   p_cons 2.578333e-02   p_joint 1.723333e-02

Joint ci ratio: 1.124243e-01	ci left: 1.611084e-02	ci right 1.804377e-02	k: 1194	n:70000
Cons ci ratio: 9.106925e-02	ci left: 2.461016e-02	ci right 2.697223e-02	k: 1804	n:70000
KS ci ratio: 8.418598e-02	ci left: 2.877665e-02	ci right 3.131965e-02	k: 2102	n:70000
VPS11   70000 perm   16 sec   (4496 perm/sec)   p_kst 3.002857e-02   p_cons 2.577143e-02   p_joint 1.705714e-02

Joint ci ratio: 1.044158e-01	ci left: 1.640777e-02	ci right 1.822748e-02	k: 1384	n:80000
Cons ci ratio: 8.459707e-02	ci left: 2.503065e-02	ci right 2.725389e-02	k: 2090	n:80000
KS ci ratio: 7.833695e-02	ci left: 2.915979e-02	ci right 3.154943e-02	k: 2427	n:80000
VPS11   80000 perm   18 sec   (4402 perm/sec)   p_kst 3.033750e-02   p_cons 2.612500e-02   p_joint 1.730000e-02

Joint ci ratio: 1.455034e-01	ci left: 7.417630e-03	ci right 8.592192e-03	k: 719	n:90000
Cons ci ratio: 7.962652e-02	ci left: 2.517708e-02	ci right 2.727583e-02	k: 2359	n:90000
KS ci ratio: 7.354503e-02	ci left: 2.947346e-02	ci right 3.173471e-02	k: 2753	n:90000
VPS11   90000 perm   21 sec   (4315 perm/sec)   p_kst 3.058889e-02   p_cons 2.621111e-02   p_joint 7.988889e-03

Joint ci ratio: 8.675036e-02	ci left: 1.914123e-02	ci right 2.088677e-02	k: 2000	n:100000
Cons ci ratio: 7.507453e-02	ci left: 2.554271e-02	ci right 2.754488e-02	k: 2653	n:100000
KS ci ratio: 6.975922e-02	ci left: 2.954115e-02	ci right 3.168619e-02	k: 3060	n:100000
VPS11   100000 perm   24 sec   (4234 perm/sec)   p_kst 3.060000e-02   p_cons 2.653000e-02   p_joint 2.000000e-02

Outputting figure to mutsig2_images.part000000000189/VPS11.2_2889_100000_0.0306_0.02653_0.02.png
                gene_name: VPS11
               theta_stop: 0.087 
                    nperm: 100000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 84 percent done.
VPS26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
Cons ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
KS ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
VPS26B   10000 perm   2 sec   (6664 perm/sec)   p_kst 4.245000e-01   p_cons 4.582000e-01   p_joint 7.754000e-01

Outputting figure to mutsig2_images.part000000000189/VPS26B.2_1035_10000_0.4245_0.4582_0.7754.png
                gene_name: VPS26B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 85 percent done.
VPS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
KS ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
VPS36   10000 perm   2 sec   (6553 perm/sec)   p_kst 5.283000e-01   p_cons 8.548000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS36.2_1217_10000_0.5283_0.8548_1.png
                gene_name: VPS36
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
VPS39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
Cons ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
KS ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
VPS39   10000 perm   2 sec   (5854 perm/sec)   p_kst 3.037000e-01   p_cons 3.758000e-01   p_joint 7.981000e-01

Outputting figure to mutsig2_images.part000000000189/VPS39.2_2728_10000_0.3037_0.3758_0.7981.png
                gene_name: VPS39
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 89 percent done.
VPS4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
Cons ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
VPS4A   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.226000e-01   p_cons 8.815000e-01   p_joint 6.172000e-01

Outputting figure to mutsig2_images.part000000000189/VPS4A.2_1358_10000_0.3226_0.8815_0.6172.png
                gene_name: VPS4A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 90 percent done.
VPS72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
Cons ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
KS ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
VPS72   10000 perm   1 sec   (6958 perm/sec)   p_kst 3.138000e-01   p_cons 1.950000e-01   p_joint 6.538000e-01

Outputting figure to mutsig2_images.part000000000189/VPS72.2_1119_10000_0.3138_0.195_0.6538.png
                gene_name: VPS72
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 92 percent done.
VRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
KS ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
VRK1   10000 perm   2 sec   (6664 perm/sec)   p_kst 9.747000e-01   p_cons 5.164000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VRK1.2_1239_10000_0.9747_0.5164_1.png
                gene_name: VRK1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
VRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
Cons ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
KS ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
VRK2   10000 perm   2 sec   (6462 perm/sec)   p_kst 3.423000e-01   p_cons 1.968000e-01   p_joint 3.808000e-01

Outputting figure to mutsig2_images.part000000000189/VRK2.2_1588_10000_0.3423_0.1968_0.3808.png
                gene_name: VRK2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 95 percent done.
VSNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
Cons ci ratio: 2.324121e-02	ci left: 7.311828e-01	ci right 7.484773e-01	k: 7399	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
VSNL1   10000 perm   1 sec   (7026 perm/sec)   p_kst 1.418000e-01   p_cons 7.399000e-01   p_joint 2.715000e-01

Outputting figure to mutsig2_images.part000000000189/VSNL1.2_588_10000_0.1418_0.7399_0.2715.png
                gene_name: VSNL1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 97 percent done.
VTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
Cons ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
KS ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
VTN   10000 perm   2 sec   (6460 perm/sec)   p_kst 1.942000e-01   p_cons 1.013000e-01   p_joint 2.919000e-01

Joint ci ratio: 6.396297e-02	ci left: 1.530194e-01	ci right 1.631802e-01	k: 3161	n:20000
Cons ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
KS ci ratio: 5.612130e-02	ci left: 1.905673e-01	ci right 2.016211e-01	k: 3921	n:20000
VTN   20000 perm   4 sec   (5686 perm/sec)   p_kst 1.960500e-01   p_cons 1.072000e-01   p_joint 1.580500e-01

Outputting figure to mutsig2_images.part000000000189/VTN.2_1469_20000_0.19605_0.1072_0.15805.png
                gene_name: VTN
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
VWA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
KS ci ratio: 1.929411e-02	ci left: 7.970962e-01	ci right 8.127257e-01	k: 8050	n:10000
VWA2   10000 perm   2 sec   (6354 perm/sec)   p_kst 8.050000e-01   p_cons 9.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VWA2.2_2222_10000_0.805_0.9338_1.png
                gene_name: VWA2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000189
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 189 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 4422691: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000190> was used as the working directory.
Started at Wed Oct 24 18:10:34 2012
Results reported at Wed Oct 24 19:22:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000190.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000190.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 190  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000190.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4237.17 sec.
    Max Memory :      5244 MB
    Max Swap   :      7729 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
190
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 190
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 190: processing genes 17100 - 17189
Calculating significance of each gene.
Using projection method.
17100	WASL	7.261987e-01
17101	WBP1	2.447524e-01
17102	WBP11	7.085463e-01
17103	WBP2	7.456732e-01
17104	WBP2NL	2.972044e-01
17105	WBP4	4.314260e-01
17106	WBP5	8.314021e-02
17107	WBSCR16	5.678860e-01
17108	WBSCR17	8.089716e-01
17109	WBSCR22	1
17110	WBSCR27	2.234887e-01
17111	WBSCR28	8.806443e-02
17112	WDFY1	8.266153e-01
17113	WDFY2	7.008724e-01
In gene WDFY3 the following bins exceed PROBCAP:
    LUAD-17-Z005-TP	categ 6	N = 10865   n = 1	mu =   3.01e-07
17114	WDFY3	9.986235e-01
In gene WDHD1 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 3490    n = 1	mu =   9.71e-07
17115	WDHD1	2.952706e-01
17116	WDR1	8.315793e-01
17117	WDR11	9.725787e-01
17118	WDR12	1
17119	WDR13	2.533916e-01
17120	WDR16	2.129298e-03
17121	WDR17	3.743843e-01
17122	WDR18	9.192515e-01
17123	WDR19	1
17124	WDR20	9.069381e-01
17125	WDR24	9.884829e-01
17126	WDR25	9.229156e-01
17127	WDR26	9.346383e-01
17128	WDR27	8.421937e-01
17129	WDR3	1
17130	WDR31	7.660692e-01
17131	WDR33	1
17132	WDR34	1
17133	WDR35	4.960744e-01
17134	WDR36	9.908954e-01
17135	WDR37	8.180552e-01
17136	WDR38	3.792042e-01
17137	WDR4	1
17138	WDR41	9.059182e-01
17139	WDR43	8.106091e-01
17140	WDR44	9.441811e-01
17141	WDR45	1
17142	WDR45L	8.482285e-01
17143	WDR46	9.888950e-01
17144	WDR47	8.537061e-01
17145	WDR48	9.312046e-01
17146	WDR49	1.763895e-05
17147	WDR5	6.827329e-01
17148	WDR52	9.870783e-01
17149	WDR53	1.883910e-01
17150	WDR54	5.215801e-01
17151	WDR55	1
17152	WDR59	9.621097e-01
17153	WDR5B	6.591234e-01
17154	WDR6	8.914738e-01
17155	WDR60	5.540657e-01
17156	WDR61	5.878808e-01
17157	WDR62	9.271767e-01
17158	WDR63	8.021627e-01
17159	WDR64	1.249682e-03
17160	WDR65	4.565389e-01
17161	WDR66	7.264586e-01
17162	WDR67	6.278439e-01
17163	WDR69	7.806360e-01
17164	WDR7	9.996999e-01
17165	WDR70	1.920015e-01
17166	WDR72	9.669673e-01
17167	WDR73	6.922930e-01
17168	WDR74	8.984971e-01
17169	WDR75	3.246934e-01
17170	WDR76	9.746487e-01
In gene WDR77 the following bins exceed PROBCAP:
    LUAD-17-Z048-TP	categ 6	N = 967     n = 1	mu =   5.69e-07
17171	WDR77	6.635477e-01
17172	WDR78	9.787771e-01
17173	WDR8	1
17174	WDR81	9.948585e-01
17175	WDR82	8.731915e-01
17176	WDR83	1
17177	WDR85	1
17178	WDR86	1
17179	WDR88	8.007924e-01
17180	WDR89	7.623040e-02
17181	WDR90	9.977282e-01
17182	WDR91	9.177762e-01
17183	WDR92	9.111749e-01
17184	WDR93	6.360716e-01
17185	WDSUB1	8.000179e-01
17186	WDTC1	3.666433e-01
17187	WDYHV1	1.045745e-01
17188	WEE1	2.857342e-01
17189	WEE2	1
Done

Running MutSig 2:
Scatter job 190: processing genes 17100 - 17189
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WDFY3
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
KS ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
WDFY3   10000 perm   5 sec   (2092 perm/sec)   p_kst 7.259000e-01   p_cons 1.850000e-02   p_joint 7.570000e-02

Joint ci ratio: 7.435849e-02	ci left: 1.174451e-01	ci right 1.265651e-01	k: 2439	n:20000
Cons ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
KS ci ratio: 1.743104e-02	ci left: 7.102983e-01	ci right 7.228387e-01	k: 14332	n:20000
WDFY3   20000 perm   13 sec   (1555 perm/sec)   p_kst 7.166000e-01   p_cons 1.820000e-02   p_joint 1.219500e-01

Joint ci ratio: 7.640274e-02	ci left: 7.757640e-02	ci right 8.377176e-02	k: 2419	n:30000
Cons ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
KS ci ratio: 1.424183e-02	ci left: 7.111950e-01	ci right 7.214298e-01	k: 21490	n:30000
WDFY3   30000 perm   17 sec   (1761 perm/sec)   p_kst 7.163333e-01   p_cons 1.846667e-02   p_joint 8.063333e-02

Joint ci ratio: 6.888187e-02	ci left: 7.231422e-02	ci right 7.749770e-02	k: 2995	n:40000
Cons ci ratio: 1.424672e-01	ci left: 1.725026e-02	ci right 1.992028e-02	k: 742	n:40000
KS ci ratio: 1.283104e-02	ci left: 6.954823e-01	ci right 7.044887e-01	k: 28000	n:40000
WDFY3   40000 perm   21 sec   (1894 perm/sec)   p_kst 7.000000e-01   p_cons 1.855000e-02   p_joint 7.487500e-02

Joint ci ratio: 6.098725e-02	ci left: 7.398767e-02	ci right 7.866166e-02	k: 3815	n:50000
Cons ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
KS ci ratio: 1.147373e-02	ci left: 6.960621e-01	ci right 7.041146e-01	k: 35005	n:50000
WDFY3   50000 perm   25 sec   (1974 perm/sec)   p_kst 7.001000e-01   p_cons 1.864000e-02   p_joint 7.630000e-02

Joint ci ratio: 5.306511e-02	ci left: 8.115015e-02	ci right 8.559025e-02	k: 5001	n:60000
Cons ci ratio: 1.168868e-01	ci left: 1.732347e-02	ci right 1.949013e-02	k: 1103	n:60000
KS ci ratio: 1.050233e-02	ci left: 6.952784e-01	ci right 7.026357e-01	k: 41938	n:60000
WDFY3   60000 perm   30 sec   (2025 perm/sec)   p_kst 6.989667e-01   p_cons 1.838333e-02   p_joint 8.335000e-02

Joint ci ratio: 5.140534e-02	ci left: 7.472494e-02	ci right 7.868166e-02	k: 5368	n:70000
Cons ci ratio: 1.086900e-01	ci left: 1.725042e-02	ci right 1.924694e-02	k: 1276	n:70000
KS ci ratio: 9.722837e-03	ci left: 6.955723e-01	ci right 7.023826e-01	k: 48929	n:70000
WDFY3   70000 perm   34 sec   (2060 perm/sec)   p_kst 6.989857e-01   p_cons 1.822857e-02   p_joint 7.668571e-02

Joint ci ratio: 4.457827e-02	ci left: 8.616935e-02	ci right 9.011057e-02	k: 7050	n:80000
Cons ci ratio: 1.028403e-01	ci left: 1.691939e-02	ci right 1.876582e-02	k: 1426	n:80000
KS ci ratio: 9.105659e-03	ci left: 6.952940e-01	ci right 7.016666e-01	k: 55879	n:80000
WDFY3   80000 perm   39 sec   (2073 perm/sec)   p_kst 6.984875e-01   p_cons 1.782500e-02   p_joint 8.812500e-02

Joint ci ratio: 4.220814e-02	ci left: 8.560667e-02	ci right 8.930886e-02	k: 7870	n:90000
Cons ci ratio: 9.790610e-02	ci left: 1.664251e-02	ci right 1.836657e-02	k: 1574	n:90000
KS ci ratio: 8.596200e-03	ci left: 6.949217e-01	ci right 7.009322e-01	k: 62814	n:90000
WDFY3   90000 perm   43 sec   (2087 perm/sec)   p_kst 6.979333e-01   p_cons 1.748889e-02   p_joint 8.744444e-02

Outputting figure to mutsig2_images.part000000000190/WDFY3.26_10884_90000_0.69793_0.017489_0.087444.png
                gene_name: WDFY3
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.089 

Current progress: 2 percent done.
WDR49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
WDR49   10000 perm   2 sec   (4577 perm/sec)   p_kst 2.308000e-01   p_cons 1.452000e-01   p_joint 1.803000e-01

Outputting figure to mutsig2_images.part000000000190/WDR49.18_2150_10000_0.2308_0.1452_0.1803.png
                gene_name: WDR49
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 3 percent done.
WBSCR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
WBSCR17   10000 perm   2 sec   (5052 perm/sec)   p_kst 1.650000e-01   p_cons 2.356000e-01   p_joint 1.807000e-01

Outputting figure to mutsig2_images.part000000000190/WBSCR17.16_1841_10000_0.165_0.2356_0.1807.png
                gene_name: WBSCR17
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 5 percent done.
WDR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
Cons ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
KS ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
WDR17   10000 perm   2 sec   (4359 perm/sec)   p_kst 3.180000e-02   p_cons 8.790000e-02   p_joint 3.070000e-02

Joint ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
Cons ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
WDR17   20000 perm   5 sec   (3949 perm/sec)   p_kst 3.330000e-02   p_cons 8.855000e-02   p_joint 3.200000e-02

Joint ci ratio: 1.208175e-01	ci left: 3.184836e-02	ci right 3.597588e-02	k: 1016	n:30000
Cons ci ratio: 6.942271e-02	ci left: 9.272183e-02	ci right 9.942330e-02	k: 2881	n:30000
KS ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
WDR17   30000 perm   8 sec   (3787 perm/sec)   p_kst 3.310000e-02   p_cons 9.603333e-02   p_joint 3.386667e-02

Joint ci ratio: 1.110679e-01	ci left: 2.852023e-02	ci right 3.189842e-02	k: 1207	n:40000
Cons ci ratio: 5.973302e-02	ci left: 9.428915e-02	ci right 1.001195e-01	k: 3887	n:40000
KS ci ratio: 1.058495e-01	ci left: 3.139265e-02	ci right 3.492554e-02	k: 1325	n:40000
WDR17   40000 perm   11 sec   (3685 perm/sec)   p_kst 3.312500e-02   p_cons 9.717500e-02   p_joint 3.017500e-02

Joint ci ratio: 9.009486e-02	ci left: 3.483408e-02	ci right 3.814002e-02	k: 1823	n:50000
Cons ci ratio: 5.415193e-02	ci left: 9.228542e-02	ci right 9.744173e-02	k: 4742	n:50000
KS ci ratio: 9.486745e-02	ci left: 3.145137e-02	ci right 3.460315e-02	k: 1650	n:50000
WDR17   50000 perm   14 sec   (3609 perm/sec)   p_kst 3.300000e-02   p_cons 9.484000e-02   p_joint 3.646000e-02

Outputting figure to mutsig2_images.part000000000190/WDR17.16_4089_50000_0.033_0.09484_0.03646.png
                gene_name: WDR17
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 6 percent done.
WDR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
Cons ci ratio: 4.990243e-02	ci left: 3.719650e-01	ci right 3.911040e-01	k: 3815	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
WDR7   10000 perm   2 sec   (4337 perm/sec)   p_kst 3.963000e-01   p_cons 3.815000e-01   p_joint 4.942000e-01

Outputting figure to mutsig2_images.part000000000190/WDR7.14_4581_10000_0.3963_0.3815_0.4942.png
                gene_name: WDR7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 8 percent done.
WDR16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
Cons ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
WDR16   10000 perm   2 sec   (5086 perm/sec)   p_kst 1.955000e-01   p_cons 5.348000e-01   p_joint 3.083000e-01

Outputting figure to mutsig2_images.part000000000190/WDR16.11_1919_10000_0.1955_0.5348_0.3083.png
                gene_name: WDR16
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
WDR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
Cons ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
WDR64   10000 perm   2 sec   (4351 perm/sec)   p_kst 2.203000e-01   p_cons 8.250000e-01   p_joint 3.888000e-01

Outputting figure to mutsig2_images.part000000000190/WDR64.11_3354_10000_0.2203_0.825_0.3888.png
                gene_name: WDR64
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 11 percent done.
WDR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
Cons ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
KS ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
WDR3   10000 perm   2 sec   (4791 perm/sec)   p_kst 6.279000e-01   p_cons 8.399000e-01   p_joint 7.378000e-01

Outputting figure to mutsig2_images.part000000000190/WDR3.9_2936_10000_0.6279_0.8399_0.7378.png
                gene_name: WDR3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 12 percent done.
WDR70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
KS ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
WDR70   10000 perm   2 sec   (4322 perm/sec)   p_kst 5.107000e-01   p_cons 1.228000e-01   p_joint 4.182000e-01

Joint ci ratio: 3.942005e-02	ci left: 3.242793e-01	ci right 3.373699e-01	k: 6616	n:20000
Cons ci ratio: 7.165781e-02	ci left: 1.254666e-01	ci right 1.348412e-01	k: 2602	n:20000
KS ci ratio: 2.715136e-02	ci left: 5.033459e-01	ci right 5.172511e-01	k: 10206	n:20000
WDR70   20000 perm   5 sec   (4071 perm/sec)   p_kst 5.103000e-01   p_cons 1.301000e-01   p_joint 3.308000e-01

Outputting figure to mutsig2_images.part000000000190/WDR70.9_2037_20000_0.5103_0.1301_0.3308.png
                gene_name: WDR70
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 14 percent done.
WDR60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
Cons ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
KS ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
WDR60   10000 perm   2 sec   (4725 perm/sec)   p_kst 6.050000e-02   p_cons 3.588000e-01   p_joint 1.364000e-01

Joint ci ratio: 6.606010e-02	ci left: 1.447323e-01	ci right 1.546698e-01	k: 2993	n:20000
Cons ci ratio: 3.724061e-02	ci left: 3.498085e-01	ci right 3.631333e-01	k: 7129	n:20000
KS ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
WDR60   20000 perm   5 sec   (4392 perm/sec)   p_kst 6.015000e-02   p_cons 3.564500e-01   p_joint 1.496500e-01

Joint ci ratio: 5.338016e-02	ci left: 1.482842e-01	ci right 1.564499e-01	k: 4570	n:30000
Cons ci ratio: 3.055315e-02	ci left: 3.488521e-01	ci right 3.597095e-01	k: 10628	n:30000
KS ci ratio: 8.955279e-02	ci left: 5.733867e-02	ci right 6.274692e-02	k: 1800	n:30000
WDR60   30000 perm   7 sec   (4249 perm/sec)   p_kst 6.000000e-02   p_cons 3.542667e-01   p_joint 1.523333e-01

Outputting figure to mutsig2_images.part000000000190/WDR60.8_3301_30000_0.06_0.35427_0.15233.png
                gene_name: WDR60
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
WDR67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
WDR67   10000 perm   2 sec   (5352 perm/sec)   p_kst 3.667000e-01   p_cons 1.024000e-01   p_joint 1.674000e-01

Joint ci ratio: 5.580292e-02	ci left: 1.923481e-01	ci right 2.034399e-01	k: 3957	n:20000
Cons ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
KS ci ratio: 3.676255e-02	ci left: 3.557334e-01	ci right 3.691066e-01	k: 7248	n:20000
WDR67   20000 perm   4 sec   (4774 perm/sec)   p_kst 3.624000e-01   p_cons 1.015500e-01   p_joint 1.978500e-01

Outputting figure to mutsig2_images.part000000000190/WDR67.8_3289_20000_0.3624_0.10155_0.19785.png
                gene_name: WDR67
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
WDR72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
KS ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
WDR72   10000 perm   2 sec   (5062 perm/sec)   p_kst 9.211000e-01   p_cons 6.733000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR72.8_3385_10000_0.9211_0.6733_1.png
                gene_name: WDR72
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
WDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.724346e-02	ci left: 8.305285e-01	ci right 8.450741e-01	k: 8379	n:10000
Cons ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
KS ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
WDHD1   10000 perm   2 sec   (4704 perm/sec)   p_kst 6.504000e-01   p_cons 9.407000e-01   p_joint 8.379000e-01

Outputting figure to mutsig2_images.part000000000190/WDHD1.7_3490_10000_0.6504_0.9407_0.8379.png
                gene_name: WDHD1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 20 percent done.
WDR35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
WDR35   10000 perm   2 sec   (4534 perm/sec)   p_kst 9.756000e-01   p_cons 4.090000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR35.7_3658_10000_0.9756_0.409_1.png
                gene_name: WDR35
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
WDR59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
Cons ci ratio: 2.095216e-02	ci left: 7.695217e-01	ci right 7.859162e-01	k: 7778	n:10000
KS ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
WDR59   10000 perm   2 sec   (4881 perm/sec)   p_kst 3.748000e-01   p_cons 7.778000e-01   p_joint 5.177000e-01

Outputting figure to mutsig2_images.part000000000190/WDR59.7_3029_10000_0.3748_0.7778_0.5177.png
                gene_name: WDR59
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 23 percent done.
WDR62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
WDR62   10000 perm   2 sec   (4526 perm/sec)   p_kst 6.660000e-02   p_cons 6.560000e-02   p_joint 8.230000e-02

Joint ci ratio: 9.283455e-02	ci left: 7.803778e-02	ci right 8.568430e-02	k: 1636	n:20000
Cons ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
KS ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
WDR62   20000 perm   5 sec   (4116 perm/sec)   p_kst 6.630000e-02   p_cons 6.605000e-02   p_joint 8.180000e-02

Joint ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
Cons ci ratio: 8.321865e-02	ci left: 6.599368e-02	ci right 7.175682e-02	k: 2065	n:30000
KS ci ratio: 8.543815e-02	ci left: 6.275856e-02	ci right 6.839259e-02	k: 1966	n:30000
WDR62   30000 perm   8 sec   (3931 perm/sec)   p_kst 6.553333e-02   p_cons 6.883333e-02   p_joint 7.570000e-02

Outputting figure to mutsig2_images.part000000000190/WDR62.7_4700_30000_0.065533_0.068833_0.0757.png
                gene_name: WDR62
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 25 percent done.
WDR66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
WDR66   10000 perm   2 sec   (4785 perm/sec)   p_kst 2.031000e-01   p_cons 2.145000e-01   p_joint 2.327000e-01

Outputting figure to mutsig2_images.part000000000190/WDR66.7_3593_10000_0.2031_0.2145_0.2327.png
                gene_name: WDR66
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 27 percent done.
WDR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
Cons ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
KS ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
WDR75   10000 perm   2 sec   (4989 perm/sec)   p_kst 3.952000e-01   p_cons 3.667000e-01   p_joint 6.203000e-01

Outputting figure to mutsig2_images.part000000000190/WDR75.7_2577_10000_0.3952_0.3667_0.6203.png
                gene_name: WDR75
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 28 percent done.
WDR90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
Cons ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
KS ci ratio: 2.449905e-02	ci left: 7.101782e-01	ci right 7.278940e-01	k: 7191	n:10000
WDR90   10000 perm   2 sec   (4104 perm/sec)   p_kst 7.191000e-01   p_cons 3.609000e-01   p_joint 8.398000e-01

Outputting figure to mutsig2_images.part000000000190/WDR90.7_5411_10000_0.7191_0.3609_0.8398.png
                gene_name: WDR90
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 30 percent done.
WDR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
KS ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
WDR19   10000 perm   2 sec   (4713 perm/sec)   p_kst 8.271000e-01   p_cons 4.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR19.6_4173_10000_0.8271_0.4115_1.png
                gene_name: WDR19
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
WDR44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
Cons ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
KS ci ratio: 6.145499e-03	ci left: 9.729141e-01	ci right 9.790043e-01	k: 9761	n:10000
WDR44   10000 perm   2 sec   (4969 perm/sec)   p_kst 9.761000e-01   p_cons 3.326000e-01   p_joint 6.395000e-01

Outputting figure to mutsig2_images.part000000000190/WDR44.6_2822_10000_0.9761_0.3326_0.6395.png
                gene_name: WDR44
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 33 percent done.
WDR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
Cons ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
WDR6   10000 perm   2 sec   (4997 perm/sec)   p_kst 6.581000e-01   p_cons 9.705000e-01   p_joint 8.460000e-01

Outputting figure to mutsig2_images.part000000000190/WDR6.6_3480_10000_0.6581_0.9705_0.846.png
                gene_name: WDR6
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 34 percent done.
WASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
WASL   10000 perm   2 sec   (5425 perm/sec)   p_kst 1.969000e-01   p_cons 3.178000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000190/WASL.5_1562_10000_0.1969_0.3178_0.6322.png
                gene_name: WASL
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
WBP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
KS ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
WBP11   10000 perm   2 sec   (5557 perm/sec)   p_kst 2.294000e-01   p_cons 2.209000e-01   p_joint 1.831000e-01

Outputting figure to mutsig2_images.part000000000190/WBP11.5_1970_10000_0.2294_0.2209_0.1831.png
                gene_name: WBP11
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 38 percent done.
WDR36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
WDR36   10000 perm   2 sec   (5196 perm/sec)   p_kst 9.541000e-01   p_cons 8.860000e-02   p_joint 2.960000e-01

Joint ci ratio: 3.938891e-02	ci left: 3.246275e-01	ci right 3.377216e-01	k: 6623	n:20000
Cons ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
KS ci ratio: 6.054571e-03	ci left: 9.515200e-01	ci right 9.573469e-01	k: 19090	n:20000
WDR36   20000 perm   4 sec   (4671 perm/sec)   p_kst 9.545000e-01   p_cons 8.645000e-02   p_joint 3.311500e-01

Outputting figure to mutsig2_images.part000000000190/WDR36.5_2948_20000_0.9545_0.08645_0.33115.png
                gene_name: WDR36
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 39 percent done.
WDR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
WDR63   10000 perm   2 sec   (5046 perm/sec)   p_kst 9.387000e-01   p_cons 6.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR63.5_2764_10000_0.9387_0.6965_1.png
                gene_name: WDR63
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
WDTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
Cons ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
KS ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
WDTC1   10000 perm   2 sec   (5207 perm/sec)   p_kst 3.588000e-01   p_cons 1.709000e-01   p_joint 3.196000e-01

Outputting figure to mutsig2_images.part000000000190/WDTC1.5_2091_10000_0.3588_0.1709_0.3196.png
                gene_name: WDTC1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 42 percent done.
WBSCR28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
Cons ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
KS ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
WBSCR28   10000 perm   2 sec   (6098 perm/sec)   p_kst 5.083000e-01   p_cons 8.540000e-02   p_joint 1.772000e-01

Joint ci ratio: 6.076237e-02	ci left: 1.669904e-01	ci right 1.775051e-01	k: 3444	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 2.739413e-02	ci left: 4.988955e-01	ci right 5.128028e-01	k: 10117	n:20000
WBSCR28   20000 perm   4 sec   (5439 perm/sec)   p_kst 5.058500e-01   p_cons 8.740000e-02   p_joint 1.722000e-01

Outputting figure to mutsig2_images.part000000000190/WBSCR28.4_810_20000_0.50585_0.0874_0.1722.png
                gene_name: WBSCR28
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 44 percent done.
WDR13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
KS ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
WDR13   10000 perm   2 sec   (6111 perm/sec)   p_kst 3.468000e-01   p_cons 7.216000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000190/WDR13.4_1494_10000_0.3468_0.7216_0.4437.png
                gene_name: WDR13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
WDR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
WDR52   10000 perm   2 sec   (4417 perm/sec)   p_kst 8.940000e-02   p_cons 5.800000e-03   p_joint 1.240000e-02

Joint ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
Cons ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
KS ci ratio: 8.840785e-02	ci left: 8.552962e-02	ci right 9.349019e-02	k: 1789	n:20000
WDR52   20000 perm   5 sec   (4049 perm/sec)   p_kst 8.945000e-02   p_cons 5.300000e-03   p_joint 5.850000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 3.181960e-01	ci left: 4.233429e-03	ci right 5.864692e-03	k: 150	n:30000
KS ci ratio: 7.237779e-02	ci left: 8.583391e-02	ci right 9.231260e-02	k: 2671	n:30000
WDR52   30000 perm   8 sec   (3897 perm/sec)   p_kst 8.903333e-02   p_cons 5.000000e-03   p_joint 2.966667e-03

Joint ci ratio: 2.132711e-01	ci left: 7.481591e-03	ci right 9.290869e-03	k: 334	n:40000
Cons ci ratio: 2.737508e-01	ci left: 4.402273e-03	ci right 5.821036e-03	k: 203	n:40000
KS ci ratio: 6.311653e-02	ci left: 8.516731e-02	ci right 9.074267e-02	k: 3517	n:40000
WDR52   40000 perm   11 sec   (3790 perm/sec)   p_kst 8.792500e-02   p_cons 5.075000e-03   p_joint 8.350000e-03

Joint ci ratio: 2.073101e-01	ci left: 6.363818e-03	ci right 7.854269e-03	k: 354	n:50000
Cons ci ratio: 2.468039e-01	ci left: 4.400639e-03	ci right 5.657885e-03	k: 250	n:50000
KS ci ratio: 5.645677e-02	ci left: 8.545185e-02	ci right 9.043611e-02	k: 4396	n:50000
WDR52   50000 perm   13 sec   (3713 perm/sec)   p_kst 8.792000e-02   p_cons 5.000000e-03   p_joint 7.080000e-03

Joint ci ratio: 2.345587e-01	ci left: 4.089995e-03	ci right 5.192096e-03	k: 277	n:60000
Cons ci ratio: 2.265130e-01	ci left: 4.404161e-03	ci right 5.544532e-03	k: 297	n:60000
KS ci ratio: 5.143847e-02	ci left: 8.597545e-02	ci right 9.053113e-02	k: 5294	n:60000
WDR52   60000 perm   16 sec   (3645 perm/sec)   p_kst 8.823333e-02   p_cons 4.950000e-03   p_joint 4.616667e-03

Joint ci ratio: 2.301101e-01	ci left: 3.653608e-03	ci right 4.616782e-03	k: 288	n:70000
Cons ci ratio: 2.093076e-01	ci left: 4.463869e-03	ci right 5.520662e-03	k: 348	n:70000
KS ci ratio: 4.751113e-02	ci left: 8.651898e-02	ci right 9.074376e-02	k: 6203	n:70000
WDR52   70000 perm   20 sec   (3588 perm/sec)   p_kst 8.861429e-02   p_cons 4.971429e-03   p_joint 4.114286e-03

Joint ci ratio: 2.229310e-01	ci left: 3.420885e-03	ci right 4.290704e-03	k: 307	n:80000
Cons ci ratio: 1.940508e-01	ci left: 4.582475e-03	ci right 5.578936e-03	k: 405	n:80000
KS ci ratio: 4.430661e-02	ci left: 8.714691e-02	ci right 9.110794e-02	k: 7129	n:80000
WDR52   80000 perm   23 sec   (3531 perm/sec)   p_kst 8.911250e-02   p_cons 5.062500e-03   p_joint 3.837500e-03

Joint ci ratio: 2.218972e-01	ci left: 3.072200e-03	ci right 3.849236e-03	k: 310	n:90000
Cons ci ratio: 1.829027e-01	ci left: 4.613265e-03	ci right 5.552404e-03	k: 456	n:90000
KS ci ratio: 4.179630e-02	ci left: 8.716943e-02	ci right 9.090155e-02	k: 8012	n:90000
WDR52   90000 perm   26 sec   (3479 perm/sec)   p_kst 8.902222e-02   p_cons 5.066667e-03   p_joint 3.444444e-03

Joint ci ratio: 1.508206e-01	ci left: 6.203728e-03	ci right 7.225199e-03	k: 670	n:100000
Cons ci ratio: 1.798141e-01	ci left: 4.304611e-03	ci right 5.164503e-03	k: 472	n:100000
KS ci ratio: 3.964006e-02	ci left: 8.731148e-02	ci right 9.085239e-02	k: 8907	n:100000
WDR52   100000 perm   29 sec   (3431 perm/sec)   p_kst 8.907000e-02   p_cons 4.720000e-03   p_joint 6.700000e-03

Joint ci ratio: 1.442056e-01	ci left: 6.191344e-03	ci right 7.162213e-03	k: 733	n:110000
Cons ci ratio: 1.713304e-01	ci left: 4.330483e-03	ci right 5.150510e-03	k: 520	n:110000
KS ci ratio: 3.780550e-02	ci left: 8.735065e-02	ci right 9.072560e-02	k: 9793	n:110000
WDR52   110000 perm   33 sec   (3383 perm/sec)   p_kst 8.902727e-02   p_cons 4.727273e-03   p_joint 6.663636e-03

Joint ci ratio: 1.447429e-01	ci left: 5.635120e-03	ci right 6.522338e-03	k: 728	n:120000
Cons ci ratio: 1.639442e-01	ci left: 4.352837e-03	ci right 5.138058e-03	k: 568	n:120000
KS ci ratio: 3.627876e-02	ci left: 8.705585e-02	ci right 9.028072e-02	k: 10639	n:120000
WDR52   120000 perm   36 sec   (3342 perm/sec)   p_kst 8.865833e-02   p_cons 4.733333e-03   p_joint 6.066667e-03

Joint ci ratio: 1.583427e-01	ci left: 4.320666e-03	ci right 5.070922e-03	k: 609	n:130000
Cons ci ratio: 1.586042e-01	ci left: 4.305889e-03	ci right 5.054931e-03	k: 607	n:130000
KS ci ratio: 3.499170e-02	ci left: 8.649590e-02	ci right 8.958404e-02	k: 11444	n:130000
WDR52   130000 perm   39 sec   (3301 perm/sec)   p_kst 8.803077e-02   p_cons 4.669231e-03   p_joint 4.684615e-03

Joint ci ratio: 1.727542e-01	ci left: 3.347691e-03	ci right 3.987423e-03	k: 512	n:140000
Cons ci ratio: 1.515347e-01	ci left: 4.396556e-03	ci right 5.124189e-03	k: 665	n:140000
KS ci ratio: 3.357180e-02	ci left: 8.725112e-02	ci right 9.023737e-02	k: 12423	n:140000
WDR52   140000 perm   43 sec   (3259 perm/sec)   p_kst 8.873571e-02   p_cons 4.750000e-03   p_joint 3.657143e-03

Joint ci ratio: 1.690149e-01	ci left: 3.271276e-03	ci right 3.881494e-03	k: 535	n:150000
Cons ci ratio: 1.462494e-01	ci left: 4.417955e-03	ci right 5.121398e-03	k: 714	n:150000
KS ci ratio: 3.241264e-02	ci left: 8.740482e-02	ci right 9.029110e-02	k: 13326	n:150000
WDR52   150000 perm   47 sec   (3220 perm/sec)   p_kst 8.884000e-02   p_cons 4.760000e-03   p_joint 3.566667e-03

Joint ci ratio: 1.429935e-01	ci left: 4.340607e-03	ci right 5.015035e-03	k: 747	n:160000
Cons ci ratio: 1.421369e-01	ci left: 4.394859e-03	ci right 5.073279e-03	k: 756	n:160000
KS ci ratio: 3.074379e-02	ci left: 9.081772e-02	ci right 9.365957e-02	k: 14757	n:160000
WDR52   160000 perm   51 sec   (3166 perm/sec)   p_kst 9.223125e-02   p_cons 4.725000e-03   p_joint 4.668750e-03

Joint ci ratio: 1.428217e-01	ci left: 4.096584e-03	ci right 4.732264e-03	k: 749	n:170000
Cons ci ratio: 1.380927e-01	ci left: 4.391765e-03	ci right 5.048831e-03	k: 801	n:170000
KS ci ratio: 2.981997e-02	ci left: 9.089303e-02	ci right 9.365030e-02	k: 15685	n:170000
WDR52   170000 perm   54 sec   (3127 perm/sec)   p_kst 9.226471e-02   p_cons 4.711765e-03   p_joint 4.405882e-03

Joint ci ratio: 1.423635e-01	ci left: 3.895754e-03	ci right 4.498165e-03	k: 754	n:180000
Cons ci ratio: 1.346149e-01	ci left: 4.373149e-03	ci right 5.009632e-03	k: 843	n:180000
KS ci ratio: 2.900935e-02	ci left: 9.076242e-02	ci right 9.343962e-02	k: 16577	n:180000
WDR52   180000 perm   58 sec   (3089 perm/sec)   p_kst 9.209444e-02   p_cons 4.683333e-03   p_joint 4.188889e-03

Joint ci ratio: 1.407051e-01	ci left: 3.782080e-03	ci right 4.359528e-03	k: 772	n:190000
Cons ci ratio: 1.309425e-01	ci left: 4.387225e-03	ci right 5.006983e-03	k: 891	n:190000
KS ci ratio: 2.822586e-02	ci left: 9.085567e-02	ci right 9.346206e-02	k: 17509	n:190000
WDR52   190000 perm   62 sec   (3049 perm/sec)   p_kst 9.215263e-02   p_cons 4.689474e-03   p_joint 4.063158e-03

Joint ci ratio: 1.374552e-01	ci left: 3.771538e-03	ci right 4.332987e-03	k: 809	n:200000
Cons ci ratio: 1.275552e-01	ci left: 4.400106e-03	ci right 5.004387e-03	k: 939	n:200000
KS ci ratio: 2.756109e-02	ci left: 9.058766e-02	ci right 9.312418e-02	k: 18370	n:200000
WDR52   200000 perm   66 sec   (3012 perm/sec)   p_kst 9.185000e-02   p_cons 4.695000e-03   p_joint 4.045000e-03

Joint ci ratio: 1.386768e-01	ci left: 3.527546e-03	ci right 4.057724e-03	k: 795	n:210000
Cons ci ratio: 1.311937e-01	ci left: 3.955519e-03	ci right 4.515444e-03	k: 888	n:210000
KS ci ratio: 2.694501e-02	ci left: 9.032219e-02	ci right 9.279386e-02	k: 19226	n:210000
WDR52   210000 perm   71 sec   (2978 perm/sec)   p_kst 9.155238e-02   p_cons 4.228571e-03   p_joint 3.785714e-03

Joint ci ratio: 1.405620e-01	ci left: 3.275052e-03	ci right 3.774533e-03	k: 774	n:220000
Cons ci ratio: 1.285475e-01	ci left: 3.938438e-03	ci right 4.483843e-03	k: 925	n:220000
KS ci ratio: 2.630794e-02	ci left: 9.046099e-02	ci right 9.287705e-02	k: 20166	n:220000
WDR52   220000 perm   75 sec   (2945 perm/sec)   p_kst 9.166364e-02   p_cons 4.204545e-03   p_joint 3.518182e-03

Joint ci ratio: 1.374066e-01	ci left: 3.283739e-03	ci right 3.772382e-03	k: 810	n:230000
Cons ci ratio: 1.263190e-01	ci left: 3.906102e-03	ci right 4.436948e-03	k: 958	n:230000
KS ci ratio: 2.576648e-02	ci left: 9.025119e-02	ci right 9.261129e-02	k: 21028	n:230000
WDR52   230000 perm   79 sec   (2911 perm/sec)   p_kst 9.142609e-02   p_cons 4.165217e-03   p_joint 3.521739e-03

Joint ci ratio: 1.387098e-01	ci left: 3.086554e-03	ci right 3.550569e-03	k: 795	n:240000
Cons ci ratio: 1.234548e-01	ci left: 3.924993e-03	ci right 4.445427e-03	k: 1003	n:240000
KS ci ratio: 2.523936e-02	ci left: 9.017535e-02	ci right 9.248453e-02	k: 21918	n:240000
WDR52   240000 perm   83 sec   (2878 perm/sec)   p_kst 9.132500e-02   p_cons 4.179167e-03   p_joint 3.312500e-03

Joint ci ratio: 1.218312e-01	ci left: 3.872673e-03	ci right 4.378930e-03	k: 1030	n:250000
Cons ci ratio: 1.213007e-01	ci left: 3.907582e-03	ci right 4.416019e-03	k: 1039	n:250000
KS ci ratio: 2.474152e-02	ci left: 9.011798e-02	ci right 9.237951e-02	k: 22811	n:250000
WDR52   250000 perm   88 sec   (2847 perm/sec)   p_kst 9.124400e-02   p_cons 4.156000e-03   p_joint 4.120000e-03

Joint ci ratio: 1.195908e-01	ci left: 3.869194e-03	ci right 4.365037e-03	k: 1069	n:260000
Cons ci ratio: 1.189783e-01	ci left: 3.910245e-03	ci right 4.408601e-03	k: 1080	n:260000
KS ci ratio: 2.426696e-02	ci left: 9.009986e-02	ci right 9.231696e-02	k: 23713	n:260000
WDR52   260000 perm   92 sec   (2817 perm/sec)   p_kst 9.120385e-02   p_cons 4.153846e-03   p_joint 4.111538e-03

Joint ci ratio: 1.190982e-01	ci left: 3.758216e-03	ci right 4.237712e-03	k: 1078	n:270000
Cons ci ratio: 1.167321e-01	ci left: 3.916391e-03	ci right 4.405458e-03	k: 1122	n:270000
KS ci ratio: 2.382082e-02	ci left: 9.006873e-02	ci right 9.224376e-02	k: 24611	n:270000
WDR52   270000 perm   97 sec   (2788 perm/sec)   p_kst 9.115185e-02   p_cons 4.155556e-03   p_joint 3.992593e-03

Joint ci ratio: 1.193289e-01	ci left: 3.610118e-03	ci right 4.071674e-03	k: 1074	n:280000
Cons ci ratio: 1.144115e-01	ci left: 3.936059e-03	ci right 4.417150e-03	k: 1168	n:280000
KS ci ratio: 2.339388e-02	ci left: 9.007215e-02	ci right 9.220775e-02	k: 25518	n:280000
WDR52   280000 perm   102 sec   (2758 perm/sec)   p_kst 9.113571e-02   p_cons 4.171429e-03   p_joint 3.835714e-03

Joint ci ratio: 1.179679e-01	ci left: 3.569275e-03	ci right 4.020041e-03	k: 1099	n:290000
Cons ci ratio: 1.126906e-01	ci left: 3.920943e-03	ci right 4.392499e-03	k: 1204	n:290000
KS ci ratio: 2.298193e-02	ci left: 9.012712e-02	ci right 9.222589e-02	k: 26440	n:290000
WDR52   290000 perm   106 sec   (2728 perm/sec)   p_kst 9.117241e-02   p_cons 4.151724e-03   p_joint 3.789655e-03

Joint ci ratio: 1.136975e-01	ci left: 3.722205e-03	ci right 4.174127e-03	k: 1183	n:300000
Cons ci ratio: 1.105542e-01	ci left: 3.942540e-03	ci right 4.407119e-03	k: 1251	n:300000
KS ci ratio: 2.277603e-02	ci left: 8.884226e-02	ci right 9.089233e-02	k: 26959	n:300000
WDR52   300000 perm   111 sec   (2699 perm/sec)   p_kst 8.986333e-02   p_cons 4.170000e-03   p_joint 3.943333e-03

Joint ci ratio: 1.136085e-01	ci left: 3.608390e-03	ci right 4.046127e-03	k: 1185	n:310000
Cons ci ratio: 1.082007e-01	ci left: 3.987932e-03	ci right 4.447219e-03	k: 1306	n:310000
KS ci ratio: 2.241746e-02	ci left: 8.877335e-02	ci right 9.078916e-02	k: 27831	n:310000
WDR52   310000 perm   116 sec   (2671 perm/sec)   p_kst 8.977742e-02   p_cons 4.212903e-03   p_joint 3.822581e-03

Joint ci ratio: 1.120150e-01	ci left: 3.598879e-03	ci right 4.028934e-03	k: 1219	n:320000
Cons ci ratio: 1.068216e-01	ci left: 3.966700e-03	ci right 4.417352e-03	k: 1340	n:320000
KS ci ratio: 2.205378e-02	ci left: 8.886757e-02	ci right 9.085237e-02	k: 28754	n:320000
WDR52   320000 perm   121 sec   (2642 perm/sec)   p_kst 8.985625e-02   p_cons 4.187500e-03   p_joint 3.809375e-03

Joint ci ratio: 1.202081e-01	ci left: 3.018982e-03	ci right 3.408004e-03	k: 1059	n:330000
Cons ci ratio: 1.053018e-01	ci left: 3.961543e-03	ci right 4.404809e-03	k: 1379	n:330000
KS ci ratio: 2.170645e-02	ci left: 8.896235e-02	ci right 9.091758e-02	k: 29679	n:330000
WDR52   330000 perm   126 sec   (2615 perm/sec)   p_kst 8.993636e-02   p_cons 4.178788e-03   p_joint 3.209091e-03

Joint ci ratio: 1.193139e-01	ci left: 2.975834e-03	ci right 3.356242e-03	k: 1075	n:340000
Cons ci ratio: 1.038451e-01	ci left: 3.956732e-03	ci right 4.392962e-03	k: 1418	n:340000
KS ci ratio: 2.137272e-02	ci left: 8.906935e-02	ci right 9.099647e-02	k: 30610	n:340000
WDR52   340000 perm   131 sec   (2589 perm/sec)   p_kst 9.002941e-02   p_cons 4.170588e-03   p_joint 3.161765e-03

Joint ci ratio: 1.178453e-01	ci left: 2.965663e-03	ci right 3.339780e-03	k: 1102	n:350000
Cons ci ratio: 1.021661e-01	ci left: 3.974511e-03	ci right 4.405191e-03	k: 1465	n:350000
KS ci ratio: 2.107596e-02	ci left: 8.899984e-02	ci right 9.089839e-02	k: 31481	n:350000
WDR52   350000 perm   137 sec   (2563 perm/sec)   p_kst 8.994571e-02   p_cons 4.185714e-03   p_joint 3.148571e-03

Joint ci ratio: 9.564372e-02	ci left: 4.422237e-03	ci right 4.869128e-03	k: 1671	n:360000
Cons ci ratio: 1.008005e-01	ci left: 3.972398e-03	ci right 4.396755e-03	k: 1505	n:360000
KS ci ratio: 2.080147e-02	ci left: 8.885418e-02	ci right 9.072465e-02	k: 32323	n:360000
WDR52   360000 perm   142 sec   (2538 perm/sec)   p_kst 8.978611e-02   p_cons 4.180556e-03   p_joint 4.641667e-03

Joint ci ratio: 9.468745e-02	ci left: 4.392418e-03	ci right 4.831612e-03	k: 1705	n:370000
Cons ci ratio: 9.942363e-02	ci left: 3.975708e-03	ci right 4.394278e-03	k: 1547	n:370000
KS ci ratio: 2.051604e-02	ci left: 8.888604e-02	ci right 9.073120e-02	k: 33228	n:370000
WDR52   370000 perm   147 sec   (2513 perm/sec)   p_kst 8.980541e-02   p_cons 4.181081e-03   p_joint 4.608108e-03

Outputting figure to mutsig2_images.part000000000190/WDR52.4_5716_370000_0.089805_0.0041811_0.0046081.png
                gene_name: WDR52
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.0042 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0044 
                  p_joint: 0.0046 
     ci_joint_bounds_left: 0.0044 
    ci_joint_bounds_right: 0.0048 

Current progress: 47 percent done.
WDR53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
Cons ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
KS ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
WDR53   10000 perm   2 sec   (6329 perm/sec)   p_kst 3.731000e-01   p_cons 2.440000e-01   p_joint 3.751000e-01

Outputting figure to mutsig2_images.part000000000190/WDR53.4_1085_10000_0.3731_0.244_0.3751.png
                gene_name: WDR53
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 48 percent done.
WDR65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
WDR65   10000 perm   2 sec   (5348 perm/sec)   p_kst 1.650000e-01   p_cons 3.888000e-01   p_joint 3.107000e-01

Outputting figure to mutsig2_images.part000000000190/WDR65.4_2137_10000_0.165_0.3888_0.3107.png
                gene_name: WDR65
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 50 percent done.
WDR89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
Cons ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
WDR89   10000 perm   2 sec   (5911 perm/sec)   p_kst 7.039000e-01   p_cons 4.037000e-01   p_joint 7.219000e-01

Outputting figure to mutsig2_images.part000000000190/WDR89.4_1168_10000_0.7039_0.4037_0.7219.png
                gene_name: WDR89
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 52 percent done.
WDR91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
WDR91   10000 perm   2 sec   (5551 perm/sec)   p_kst 4.483000e-01   p_cons 1.300000e-03   p_joint 9.500000e-03

Joint ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 3.137933e-02	ci left: 4.313579e-01	ci right 4.451600e-01	k: 8765	n:20000
WDR91   20000 perm   4 sec   (4997 perm/sec)   p_kst 4.382500e-01   p_cons 1.100000e-03   p_joint 3.700000e-03

Joint ci ratio: 4.551208e-01	ci left: 1.907815e-03	ci right 3.058593e-03	k: 73	n:30000
Cons ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
KS ci ratio: 2.607520e-02	ci left: 4.240221e-01	ci right 4.352582e-01	k: 12889	n:30000
WDR91   30000 perm   6 sec   (4788 perm/sec)   p_kst 4.296333e-01   p_cons 1.200000e-03   p_joint 2.433333e-03

Joint ci ratio: 2.098245e-01	ci left: 7.742128e-03	ci right 9.580270e-03	k: 345	n:40000
Cons ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
KS ci ratio: 2.267143e-02	ci left: 4.228445e-01	ci right 4.325660e-01	k: 17108	n:40000
WDR91   40000 perm   9 sec   (4643 perm/sec)   p_kst 4.277000e-01   p_cons 1.250000e-03   p_joint 8.625000e-03

Joint ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
Cons ci ratio: 4.858952e-01	ci left: 9.858912e-04	ci right 1.634242e-03	k: 64	n:50000
KS ci ratio: 2.032043e-02	ci left: 4.223391e-01	ci right 4.310294e-01	k: 21334	n:50000
WDR91   50000 perm   11 sec   (4525 perm/sec)   p_kst 4.266800e-01   p_cons 1.280000e-03   p_joint 6.680000e-03

Joint ci ratio: 2.530561e-01	ci left: 3.479507e-03	ci right 4.502723e-03	k: 238	n:60000
Cons ci ratio: 4.585183e-01	ci left: 9.390409e-04	ci right 1.510966e-03	k: 72	n:60000
KS ci ratio: 1.861261e-02	ci left: 4.210732e-01	ci right 4.290007e-01	k: 25502	n:60000
WDR91   60000 perm   14 sec   (4426 perm/sec)   p_kst 4.250333e-01   p_cons 1.200000e-03   p_joint 3.966667e-03

Joint ci ratio: 2.367844e-01	ci left: 3.438357e-03	ci right 4.374932e-03	k: 272	n:70000
Cons ci ratio: 4.200039e-01	ci left: 9.828124e-04	ci right 1.517057e-03	k: 86	n:70000
KS ci ratio: 1.721707e-02	ci left: 4.217906e-01	ci right 4.291299e-01	k: 29782	n:70000
WDR91   70000 perm   16 sec   (4340 perm/sec)   p_kst 4.254571e-01   p_cons 1.228571e-03   p_joint 3.885714e-03

Joint ci ratio: 2.377179e-01	ci left: 2.984963e-03	ci right 3.801706e-03	k: 270	n:80000
Cons ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
KS ci ratio: 1.609385e-02	ci left: 4.223701e-01	ci right 4.292353e-01	k: 34064	n:80000
WDR91   80000 perm   19 sec   (4258 perm/sec)   p_kst 4.258000e-01   p_cons 1.225000e-03   p_joint 3.375000e-03

Joint ci ratio: 1.859959e-01	ci left: 4.454259e-03	ci right 5.378095e-03	k: 441	n:90000
Cons ci ratio: 3.769737e-01	ci left: 9.744223e-04	ci right 1.436473e-03	k: 107	n:90000
KS ci ratio: 1.518623e-02	ci left: 4.221557e-01	ci right 4.286268e-01	k: 38285	n:90000
WDR91   90000 perm   22 sec   (4183 perm/sec)   p_kst 4.253889e-01   p_cons 1.188889e-03   p_joint 4.900000e-03

Joint ci ratio: 2.028631e-01	ci left: 3.342642e-03	ci right 4.106588e-03	k: 371	n:100000
Cons ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
KS ci ratio: 1.443998e-02	ci left: 4.212040e-01	ci right 4.273404e-01	k: 42427	n:100000
WDR91   100000 perm   24 sec   (4113 perm/sec)   p_kst 4.242700e-01   p_cons 1.220000e-03   p_joint 3.710000e-03

Joint ci ratio: 2.065509e-01	ci left: 2.926575e-03	ci right 3.609121e-03	k: 358	n:110000
Cons ci ratio: 3.462791e-01	ci left: 9.625806e-04	ci right 1.373539e-03	k: 127	n:110000
KS ci ratio: 1.376844e-02	ci left: 4.213314e-01	ci right 4.271817e-01	k: 46668	n:110000
WDR91   110000 perm   27 sec   (4041 perm/sec)   p_kst 4.242545e-01   p_cons 1.154545e-03   p_joint 3.254545e-03

Joint ci ratio: 1.834229e-01	ci left: 3.443852e-03	ci right 4.147130e-03	k: 454	n:120000
Cons ci ratio: 3.264693e-01	ci left: 1.004451e-03	ci right 1.403617e-03	k: 143	n:120000
KS ci ratio: 1.319772e-02	ci left: 4.208852e-01	ci right 4.264851e-01	k: 50842	n:120000
WDR91   120000 perm   30 sec   (3975 perm/sec)   p_kst 4.236833e-01   p_cons 1.191667e-03   p_joint 3.783333e-03

Joint ci ratio: 1.799129e-01	ci left: 3.311084e-03	ci right 3.972899e-03	k: 472	n:130000
Cons ci ratio: 3.126599e-01	ci left: 1.019169e-03	ci right 1.403636e-03	k: 156	n:130000
KS ci ratio: 1.269413e-02	ci left: 4.204507e-01	ci right 4.258297e-01	k: 55008	n:130000
WDR91   130000 perm   33 sec   (3903 perm/sec)   p_kst 4.231385e-01   p_cons 1.200000e-03   p_joint 3.630769e-03

Joint ci ratio: 1.760571e-01	ci left: 3.217882e-03	ci right 3.845815e-03	k: 493	n:140000
Cons ci ratio: 3.031567e-01	ci left: 1.012282e-03	ci right 1.380307e-03	k: 166	n:140000
KS ci ratio: 1.223352e-02	ci left: 4.205030e-01	ci right 4.256859e-01	k: 59233	n:140000
WDR91   140000 perm   36 sec   (3836 perm/sec)   p_kst 4.230929e-01   p_cons 1.185714e-03   p_joint 3.521429e-03

Joint ci ratio: 1.773430e-01	ci left: 2.958718e-03	ci right 3.540745e-03	k: 486	n:150000
Cons ci ratio: 2.953067e-01	ci left: 1.000292e-03	ci right 1.352779e-03	k: 175	n:150000
KS ci ratio: 1.180661e-02	ci left: 4.210909e-01	ci right 4.260987e-01	k: 63539	n:150000
WDR91   150000 perm   40 sec   (3775 perm/sec)   p_kst 4.235933e-01   p_cons 1.166667e-03   p_joint 3.240000e-03

Joint ci ratio: 1.752089e-01	ci left: 2.845474e-03	ci right 3.397774e-03	k: 498	n:160000
Cons ci ratio: 2.912055e-01	ci left: 9.667229e-04	ci right 1.301776e-03	k: 180	n:160000
KS ci ratio: 1.143550e-02	ci left: 4.210085e-01	ci right 4.258568e-01	k: 67749	n:160000
WDR91   160000 perm   43 sec   (3717 perm/sec)   p_kst 4.234312e-01   p_cons 1.125000e-03   p_joint 3.112500e-03

Joint ci ratio: 1.755783e-01	ci left: 2.666823e-03	ci right 3.185653e-03	k: 496	n:170000
Cons ci ratio: 2.827410e-01	ci left: 9.699069e-04	ci right 1.294551e-03	k: 191	n:170000
KS ci ratio: 1.109104e-02	ci left: 4.212142e-01	ci right 4.259178e-01	k: 72006	n:170000
WDR91   170000 perm   46 sec   (3662 perm/sec)   p_kst 4.235647e-01   p_cons 1.123529e-03   p_joint 2.917647e-03

Joint ci ratio: 1.325020e-01	ci left: 4.518159e-03	ci right 5.164614e-03	k: 870	n:180000
Cons ci ratio: 2.756547e-01	ci left: 9.676897e-04	ci right 1.282066e-03	k: 201	n:180000
KS ci ratio: 1.079079e-02	ci left: 4.207273e-01	ci right 4.252974e-01	k: 76142	n:180000
WDR91   180000 perm   50 sec   (3608 perm/sec)   p_kst 4.230111e-01   p_cons 1.116667e-03   p_joint 4.833333e-03

Joint ci ratio: 1.400697e-01	ci left: 3.817633e-03	ci right 4.397658e-03	k: 779	n:190000
Cons ci ratio: 2.710022e-01	ci left: 9.510750e-04	ci right 1.253952e-03	k: 208	n:190000
KS ci ratio: 1.049870e-02	ci left: 4.209875e-01	ci right 4.254359e-01	k: 80410	n:190000
WDR91   190000 perm   53 sec   (3555 perm/sec)   p_kst 4.232105e-01   p_cons 1.094737e-03   p_joint 4.100000e-03

Joint ci ratio: 1.407195e-01	ci left: 3.592951e-03	ci right 4.141583e-03	k: 772	n:200000
Cons ci ratio: 2.617687e-01	ci left: 9.735157e-04	ci right 1.271248e-03	k: 223	n:200000
KS ci ratio: 1.022964e-02	ci left: 4.211982e-01	ci right 4.255340e-01	k: 84673	n:200000
WDR91   200000 perm   57 sec   (3505 perm/sec)   p_kst 4.233650e-01   p_cons 1.115000e-03   p_joint 3.860000e-03

Joint ci ratio: 1.366245e-01	ci left: 3.637910e-03	ci right 4.175926e-03	k: 819	n:210000
Cons ci ratio: 2.566646e-01	ci left: 9.672302e-04	ci right 1.256348e-03	k: 232	n:210000
KS ci ratio: 9.978595e-03	ci left: 4.214710e-01	ci right 4.257025e-01	k: 88953	n:210000
WDR91   210000 perm   61 sec   (3457 perm/sec)   p_kst 4.235857e-01   p_cons 1.104762e-03   p_joint 3.900000e-03

Joint ci ratio: 1.443493e-01	ci left: 3.099693e-03	ci right 3.586265e-03	k: 734	n:220000
Cons ci ratio: 2.523705e-01	ci left: 9.573088e-04	ci right 1.237921e-03	k: 240	n:220000
KS ci ratio: 9.752066e-03	ci left: 4.213750e-01	ci right 4.255089e-01	k: 93157	n:220000
WDR91   220000 perm   65 sec   (3411 perm/sec)   p_kst 4.234409e-01   p_cons 1.090909e-03   p_joint 3.336364e-03

Joint ci ratio: 1.410300e-01	ci left: 3.111667e-03	ci right 3.587941e-03	k: 769	n:230000
Cons ci ratio: 2.477873e-01	ci left: 9.523646e-04	ci right 1.225676e-03	k: 249	n:230000
KS ci ratio: 9.536728e-03	ci left: 4.214708e-01	ci right 4.255138e-01	k: 97403	n:230000
WDR91   230000 perm   68 sec   (3364 perm/sec)   p_kst 4.234913e-01   p_cons 1.082609e-03   p_joint 3.343478e-03

Joint ci ratio: 1.448646e-01	ci left: 2.821276e-03	ci right 3.265860e-03	k: 729	n:240000
Cons ci ratio: 2.434450e-01	ci left: 9.478746e-04	ci right 1.214410e-03	k: 258	n:240000
KS ci ratio: 9.335212e-03	ci left: 4.215512e-01	ci right 4.255090e-01	k: 101647	n:240000
WDR91   240000 perm   72 sec   (3323 perm/sec)   p_kst 4.235292e-01   p_cons 1.075000e-03   p_joint 3.037500e-03

Joint ci ratio: 1.365005e-01	ci left: 3.063509e-03	ci right 3.516128e-03	k: 821	n:250000
Cons ci ratio: 2.388775e-01	ci left: 9.475427e-04	ci right 1.208247e-03	k: 268	n:250000
KS ci ratio: 9.140560e-03	ci left: 4.219138e-01	ci right 4.257920e-01	k: 105963	n:250000
WDR91   250000 perm   76 sec   (3281 perm/sec)   p_kst 4.238520e-01   p_cons 1.072000e-03   p_joint 3.284000e-03

Joint ci ratio: 1.430269e-01	ci left: 2.674686e-03	ci right 3.090365e-03	k: 748	n:260000
Cons ci ratio: 2.341382e-01	ci left: 9.508999e-04	ci right 1.206585e-03	k: 279	n:260000
KS ci ratio: 8.958439e-03	ci left: 4.222031e-01	ci right 4.260062e-01	k: 110267	n:260000
WDR91   260000 perm   80 sec   (3239 perm/sec)   p_kst 4.241038e-01   p_cons 1.073077e-03   p_joint 2.876923e-03

Joint ci ratio: 1.400654e-01	ci left: 2.689946e-03	ci right 3.098618e-03	k: 780	n:270000
Cons ci ratio: 2.304644e-01	ci left: 9.470747e-04	ci right 1.197167e-03	k: 288	n:270000
KS ci ratio: 8.790982e-03	ci left: 4.222386e-01	ci right 4.259705e-01	k: 114508	n:270000
WDR91   270000 perm   84 sec   (3200 perm/sec)   p_kst 4.241037e-01   p_cons 1.066667e-03   p_joint 2.888889e-03

Joint ci ratio: 1.490476e-01	ci left: 2.280583e-03	ci right 2.651263e-03	k: 689	n:280000
Cons ci ratio: 2.254486e-01	ci left: 9.570288e-04	ci right 1.203485e-03	k: 301	n:280000
KS ci ratio: 8.631820e-03	ci left: 4.223149e-01	ci right 4.259795e-01	k: 118761	n:280000
WDR91   280000 perm   89 sec   (3160 perm/sec)   p_kst 4.241464e-01   p_cons 1.075000e-03   p_joint 2.460714e-03

Joint ci ratio: 1.473512e-01	ci left: 2.255067e-03	ci right 2.617060e-03	k: 705	n:290000
Cons ci ratio: 2.214515e-01	ci left: 9.598361e-04	ci right 1.202036e-03	k: 312	n:290000
KS ci ratio: 8.483097e-03	ci left: 4.222659e-01	ci right 4.258667e-01	k: 122979	n:290000
WDR91   290000 perm   93 sec   (3123 perm/sec)   p_kst 4.240655e-01   p_cons 1.075862e-03   p_joint 2.431034e-03

Joint ci ratio: 1.453085e-01	ci left: 2.244123e-03	ci right 2.598932e-03	k: 725	n:300000
Cons ci ratio: 2.166580e-01	ci left: 9.719488e-04	ci right 1.211190e-03	k: 326	n:300000
KS ci ratio: 8.337480e-03	ci left: 4.224739e-01	ci right 4.260143e-01	k: 127273	n:300000
WDR91   300000 perm   97 sec   (3086 perm/sec)   p_kst 4.242433e-01   p_cons 1.086667e-03   p_joint 2.416667e-03

Joint ci ratio: 1.430603e-01	ci left: 2.243249e-03	ci right 2.591964e-03	k: 748	n:310000
Cons ci ratio: 2.137373e-01	ci left: 9.680630e-04	ci right 1.202715e-03	k: 335	n:310000
KS ci ratio: 8.202144e-03	ci left: 4.224884e-01	ci right 4.259711e-01	k: 131511	n:310000
WDR91   310000 perm   102 sec   (3049 perm/sec)   p_kst 4.242290e-01   p_cons 1.080645e-03   p_joint 2.412903e-03

Joint ci ratio: 1.417440e-01	ci left: 2.215336e-03	ci right 2.556275e-03	k: 762	n:320000
Cons ci ratio: 2.106262e-01	ci left: 9.674005e-04	ci right 1.198038e-03	k: 345	n:320000
KS ci ratio: 8.073604e-03	ci left: 4.224774e-01	ci right 4.259052e-01	k: 135741	n:320000
WDR91   320000 perm   106 sec   (3012 perm/sec)   p_kst 4.241906e-01   p_cons 1.078125e-03   p_joint 2.381250e-03

Joint ci ratio: 1.465433e-01	ci left: 2.005057e-03	ci right 2.324998e-03	k: 713	n:330000
Cons ci ratio: 2.079397e-01	ci left: 9.639286e-04	ci right 1.190434e-03	k: 354	n:330000
KS ci ratio: 7.949248e-03	ci left: 4.225705e-01	ci right 4.259460e-01	k: 140005	n:330000
WDR91   330000 perm   111 sec   (2977 perm/sec)   p_kst 4.242576e-01   p_cons 1.072727e-03   p_joint 2.160606e-03

Joint ci ratio: 1.502853e-01	ci left: 1.846955e-03	ci right 2.149869e-03	k: 678	n:340000
Cons ci ratio: 2.056365e-01	ci left: 9.578884e-04	ci right 1.180168e-03	k: 362	n:340000
KS ci ratio: 7.836314e-03	ci left: 4.222940e-01	ci right 4.256191e-01	k: 144145	n:340000
WDR91   340000 perm   116 sec   (2943 perm/sec)   p_kst 4.239559e-01   p_cons 1.064706e-03   p_joint 1.994118e-03

Joint ci ratio: 1.484392e-01	ci left: 1.840940e-03	ci right 2.138830e-03	k: 695	n:350000
Cons ci ratio: 2.028614e-01	ci left: 9.576304e-04	ci right 1.176480e-03	k: 372	n:350000
KS ci ratio: 7.721278e-03	ci left: 4.224619e-01	ci right 4.257393e-01	k: 148435	n:350000
WDR91   350000 perm   120 sec   (2910 perm/sec)   p_kst 4.241000e-01   p_cons 1.062857e-03   p_joint 1.985714e-03

Joint ci ratio: 1.235413e-01	ci left: 2.616552e-03	ci right 2.963750e-03	k: 1003	n:360000
Cons ci ratio: 1.996746e-01	ci left: 9.626833e-04	ci right 1.178810e-03	k: 384	n:360000
KS ci ratio: 7.617658e-03	ci left: 4.222044e-01	ci right 4.254357e-01	k: 152575	n:360000
WDR91   360000 perm   125 sec   (2876 perm/sec)   p_kst 4.238194e-01   p_cons 1.066667e-03   p_joint 2.786111e-03

Joint ci ratio: 1.217947e-01	ci left: 2.621808e-03	ci right 2.964430e-03	k: 1032	n:370000
Cons ci ratio: 1.968817e-01	ci left: 9.649188e-04	ci right 1.178154e-03	k: 395	n:370000
KS ci ratio: 7.512649e-03	ci left: 4.223150e-01	ci right 4.255024e-01	k: 156846	n:370000
WDR91   370000 perm   130 sec   (2843 perm/sec)   p_kst 4.239081e-01   p_cons 1.067568e-03   p_joint 2.789189e-03

Joint ci ratio: 1.209220e-01	ci left: 2.591086e-03	ci right 2.927094e-03	k: 1047	n:380000
Cons ci ratio: 1.954081e-01	ci left: 9.545398e-04	ci right 1.163715e-03	k: 401	n:380000
KS ci ratio: 7.411586e-03	ci left: 4.224385e-01	ci right 4.255837e-01	k: 161124	n:380000
WDR91   380000 perm   135 sec   (2811 perm/sec)   p_kst 4.240105e-01   p_cons 1.055263e-03   p_joint 2.755263e-03

Joint ci ratio: 1.199546e-01	ci left: 2.566923e-03	ci right 2.896945e-03	k: 1064	n:390000
Cons ci ratio: 1.907191e-01	ci left: 9.788692e-04	ci right 1.187632e-03	k: 421	n:390000
KS ci ratio: 7.316261e-03	ci left: 4.224380e-01	ci right 4.255426e-01	k: 165356	n:390000
WDR91   390000 perm   140 sec   (2776 perm/sec)   p_kst 4.239897e-01   p_cons 1.079487e-03   p_joint 2.728205e-03

Joint ci ratio: 1.182455e-01	ci left: 2.577942e-03	ci right 2.904328e-03	k: 1095	n:400000
Cons ci ratio: 1.884990e-01	ci left: 9.782108e-04	ci right 1.184126e-03	k: 431	n:400000
KS ci ratio: 7.224780e-03	ci left: 4.224203e-01	ci right 4.254858e-01	k: 169581	n:400000
WDR91   400000 perm   146 sec   (2746 perm/sec)   p_kst 4.239525e-01   p_cons 1.077500e-03   p_joint 2.737500e-03

Joint ci ratio: 1.170246e-01	ci left: 2.569511e-03	ci right 2.891239e-03	k: 1118	n:410000
Cons ci ratio: 1.859340e-01	ci left: 9.822488e-04	ci right 1.185883e-03	k: 443	n:410000
KS ci ratio: 7.135365e-03	ci left: 4.224915e-01	ci right 4.255193e-01	k: 173842	n:410000
WDR91   410000 perm   151 sec   (2717 perm/sec)   p_kst 4.240049e-01   p_cons 1.080488e-03   p_joint 2.726829e-03

Joint ci ratio: 1.154864e-01	ci left: 2.577685e-03	ci right 2.895904e-03	k: 1148	n:420000
Cons ci ratio: 1.836726e-01	ci left: 9.838409e-04	ci right 1.185049e-03	k: 454	n:420000
KS ci ratio: 7.051870e-03	ci left: 4.223739e-01	ci right 4.253653e-01	k: 178025	n:420000
WDR91   420000 perm   156 sec   (2690 perm/sec)   p_kst 4.238690e-01   p_cons 1.080952e-03   p_joint 2.733333e-03

Joint ci ratio: 1.227753e-01	ci left: 2.219875e-03	ci right 2.512476e-03	k: 1016	n:430000
Cons ci ratio: 1.816871e-01	ci left: 9.831532e-04	ci right 1.181808e-03	k: 464	n:430000
KS ci ratio: 6.968716e-03	ci left: 4.224386e-01	ci right 4.253950e-01	k: 182284	n:430000
WDR91   430000 perm   162 sec   (2662 perm/sec)   p_kst 4.239163e-01   p_cons 1.079070e-03   p_joint 2.362791e-03

Joint ci ratio: 1.224172e-01	ci left: 2.182639e-03	ci right 2.469432e-03	k: 1022	n:440000
Cons ci ratio: 1.797646e-01	ci left: 9.825079e-04	ci right 1.178703e-03	k: 474	n:440000
KS ci ratio: 6.886353e-03	ci left: 4.226482e-01	ci right 4.255710e-01	k: 186608	n:440000
WDR91   440000 perm   167 sec   (2635 perm/sec)   p_kst 4.241091e-01   p_cons 1.077273e-03   p_joint 2.322727e-03

Joint ci ratio: 1.213549e-01	ci left: 2.172916e-03	ci right 2.455776e-03	k: 1040	n:450000
Cons ci ratio: 1.779019e-01	ci left: 9.819019e-04	ci right 1.175725e-03	k: 484	n:450000
KS ci ratio: 6.808389e-03	ci left: 4.227376e-01	ci right 4.256278e-01	k: 190882	n:450000
WDR91   450000 perm   173 sec   (2608 perm/sec)   p_kst 4.241822e-01   p_cons 1.075556e-03   p_joint 2.311111e-03

Joint ci ratio: 1.210089e-01	ci left: 2.138324e-03	ci right 2.415831e-03	k: 1046	n:460000
Cons ci ratio: 1.757408e-01	ci left: 9.854887e-04	ci right 1.177406e-03	k: 496	n:460000
KS ci ratio: 6.733584e-03	ci left: 4.227821e-01	ci right 4.256406e-01	k: 195137	n:460000
WDR91   460000 perm   178 sec   (2581 perm/sec)   p_kst 4.242109e-01   p_cons 1.078261e-03   p_joint 2.273913e-03

Joint ci ratio: 1.200391e-01	ci left: 2.127907e-03	ci right 2.401691e-03	k: 1063	n:470000
Cons ci ratio: 1.738277e-01	ci left: 9.869013e-04	ci right 1.176782e-03	k: 507	n:470000
KS ci ratio: 6.660959e-03	ci left: 4.228418e-01	ci right 4.256698e-01	k: 199400	n:470000
WDR91   470000 perm   184 sec   (2555 perm/sec)   p_kst 4.242553e-01   p_cons 1.078723e-03   p_joint 2.261702e-03

Joint ci ratio: 9.619148e-02	ci left: 3.282018e-03	ci right 3.615687e-03	k: 1654	n:480000
Cons ci ratio: 1.721418e-01	ci left: 9.862722e-04	ci right 1.174000e-03	k: 517	n:480000
KS ci ratio: 6.370243e-03	ci left: 4.395885e-01	ci right 4.423997e-01	k: 211677	n:480000
WDR91   480000 perm   190 sec   (2529 perm/sec)   p_kst 4.409938e-01   p_cons 1.077083e-03   p_joint 3.445833e-03

Joint ci ratio: 1.020532e-01	ci left: 2.848795e-03	ci right 3.157128e-03	k: 1470	n:490000
Cons ci ratio: 1.693837e-01	ci left: 9.993559e-04	ci right 1.186216e-03	k: 534	n:490000
KS ci ratio: 6.304513e-03	ci left: 4.396336e-01	ci right 4.424161e-01	k: 216102	n:490000
WDR91   490000 perm   196 sec   (2504 perm/sec)   p_kst 4.410245e-01   p_cons 1.089796e-03   p_joint 3.000000e-03

Joint ci ratio: 1.014357e-01	ci left: 2.826902e-03	ci right 3.130903e-03	k: 1488	n:500000
Cons ci ratio: 1.685987e-01	ci left: 9.889454e-04	ci right 1.172914e-03	k: 539	n:500000
KS ci ratio: 6.240599e-03	ci left: 4.396911e-01	ci right 4.424456e-01	k: 220534	n:500000
WDR91   500000 perm   202 sec   (2479 perm/sec)   p_kst 4.410680e-01   p_cons 1.078000e-03   p_joint 2.976000e-03

Joint ci ratio: 1.006285e-01	ci left: 2.817341e-03	ci right 3.117761e-03	k: 1512	n:510000
Cons ci ratio: 1.666048e-01	ci left: 9.939756e-04	ci right 1.176474e-03	k: 552	n:510000
KS ci ratio: 6.178394e-03	ci left: 4.397621e-01	ci right 4.424895e-01	k: 224974	n:510000
WDR91   510000 perm   208 sec   (2455 perm/sec)   p_kst 4.411255e-01   p_cons 1.082353e-03   p_joint 2.964706e-03

Joint ci ratio: 1.006314e-01	ci left: 2.763158e-03	ci right 3.057808e-03	k: 1512	n:520000
Cons ci ratio: 1.652657e-01	ci left: 9.914495e-04	ci right 1.171876e-03	k: 561	n:520000
KS ci ratio: 6.119277e-03	ci left: 4.397287e-01	ci right 4.424297e-01	k: 229361	n:520000
WDR91   520000 perm   214 sec   (2431 perm/sec)   p_kst 4.410788e-01   p_cons 1.078846e-03   p_joint 2.907692e-03

Joint ci ratio: 9.061097e-02	ci left: 3.359378e-03	ci right 3.680049e-03	k: 1864	n:530000
Cons ci ratio: 1.636716e-01	ci left: 9.926434e-04	ci right 1.171373e-03	k: 572	n:530000
KS ci ratio: 6.059599e-03	ci left: 4.398777e-01	ci right 4.425531e-01	k: 233844	n:530000
WDR91   530000 perm   220 sec   (2408 perm/sec)   p_kst 4.412151e-01   p_cons 1.079245e-03   p_joint 3.516981e-03

Joint ci ratio: 8.939559e-02	ci left: 3.389489e-03	ci right 3.708467e-03	k: 1915	n:540000
Cons ci ratio: 1.615699e-01	ci left: 1.000909e-03	ci right 1.178588e-03	k: 587	n:540000
KS ci ratio: 6.002895e-03	ci left: 4.399176e-01	ci right 4.425682e-01	k: 238271	n:540000
WDR91   540000 perm   226 sec   (2388 perm/sec)   p_kst 4.412426e-01   p_cons 1.087037e-03   p_joint 3.546296e-03

Joint ci ratio: 8.849914e-02	ci left: 3.397194e-03	ci right 3.713526e-03	k: 1954	n:550000
Cons ci ratio: 1.595471e-01	ci left: 1.008888e-03	ci right 1.185526e-03	k: 602	n:550000
KS ci ratio: 5.950078e-03	ci left: 4.397636e-01	ci right 4.423898e-01	k: 242592	n:550000
WDR91   550000 perm   233 sec   (2365 perm/sec)   p_kst 4.410764e-01   p_cons 1.094545e-03   p_joint 3.552727e-03

Joint ci ratio: 9.342552e-02	ci left: 2.987475e-03	ci right 3.281988e-03	k: 1754	n:560000
Cons ci ratio: 1.590215e-01	ci left: 9.977296e-04	ci right 1.171784e-03	k: 606	n:560000
KS ci ratio: 5.897520e-03	ci left: 4.397079e-01	ci right 4.423105e-01	k: 246965	n:560000
WDR91   560000 perm   239 sec   (2343 perm/sec)   p_kst 4.410089e-01   p_cons 1.082143e-03   p_joint 3.132143e-03

Joint ci ratio: 9.255922e-02	ci left: 2.991612e-03	ci right 3.283650e-03	k: 1787	n:570000
Cons ci ratio: 1.572183e-01	ci left: 1.003815e-03	ci right 1.176758e-03	k: 620	n:570000
KS ci ratio: 5.846143e-03	ci left: 4.396701e-01	ci right 4.422498e-01	k: 251347	n:570000
WDR91   570000 perm   245 sec   (2323 perm/sec)   p_kst 4.409596e-01   p_cons 1.087719e-03   p_joint 3.135088e-03

Joint ci ratio: 9.335059e-02	ci left: 2.889504e-03	ci right 3.174117e-03	k: 1757	n:580000
Cons ci ratio: 1.559677e-01	ci left: 1.003074e-03	ci right 1.174386e-03	k: 630	n:580000
KS ci ratio: 5.795944e-03	ci left: 4.396458e-01	ci right 4.422031e-01	k: 255736	n:580000
WDR91   580000 perm   252 sec   (2303 perm/sec)   p_kst 4.409241e-01   p_cons 1.086207e-03   p_joint 3.029310e-03

Joint ci ratio: 9.292980e-02	ci left: 2.867015e-03	ci right 3.148070e-03	k: 1773	n:590000
Cons ci ratio: 1.551102e-01	ci left: 9.974751e-04	ci right 1.166807e-03	k: 637	n:590000
KS ci ratio: 5.746266e-03	ci left: 4.396868e-01	ci right 4.422223e-01	k: 260163	n:590000
WDR91   590000 perm   258 sec   (2283 perm/sec)   p_kst 4.409542e-01   p_cons 1.079661e-03   p_joint 3.005085e-03

Joint ci ratio: 9.192416e-02	ci left: 2.882730e-03	ci right 3.162103e-03	k: 1812	n:600000
Cons ci ratio: 1.539088e-01	ci left: 9.968728e-04	ci right 1.164671e-03	k: 647	n:600000
KS ci ratio: 5.697304e-03	ci left: 4.397731e-01	ci right 4.422874e-01	k: 264618	n:600000
WDR91   600000 perm   265 sec   (2263 perm/sec)   p_kst 4.410300e-01   p_cons 1.078333e-03   p_joint 3.020000e-03

Joint ci ratio: 9.112337e-02	ci left: 2.886730e-03	ci right 3.163925e-03	k: 1844	n:610000
Cons ci ratio: 1.521573e-01	ci left: 1.004179e-03	ci right 1.171109e-03	k: 662	n:610000
KS ci ratio: 5.650380e-03	ci left: 4.397863e-01	ci right 4.422799e-01	k: 269030	n:610000
WDR91   610000 perm   272 sec   (2243 perm/sec)   p_kst 4.410328e-01   p_cons 1.085246e-03   p_joint 3.022951e-03

Joint ci ratio: 9.039146e-02	ci left: 2.887459e-03	ci right 3.162379e-03	k: 1874	n:620000
Cons ci ratio: 1.511352e-01	ci left: 1.001948e-03	ci right 1.167287e-03	k: 671	n:620000
KS ci ratio: 5.604707e-03	ci left: 4.397894e-01	ci right 4.422628e-01	k: 273436	n:620000
WDR91   620000 perm   279 sec   (2224 perm/sec)   p_kst 4.410258e-01   p_cons 1.082258e-03   p_joint 3.022581e-03

Joint ci ratio: 8.984263e-02	ci left: 2.877311e-03	ci right 3.149513e-03	k: 1897	n:630000
Cons ci ratio: 1.503546e-01	ci left: 9.967361e-04	ci right 1.160288e-03	k: 678	n:630000
KS ci ratio: 5.561914e-03	ci left: 4.396338e-01	ci right 4.420874e-01	k: 277742	n:630000
WDR91   630000 perm   286 sec   (2205 perm/sec)   p_kst 4.408603e-01   p_cons 1.076190e-03   p_joint 3.011111e-03

Joint ci ratio: 8.928036e-02	ci left: 2.869012e-03	ci right 3.138643e-03	k: 1921	n:640000
Cons ci ratio: 1.494769e-01	ci left: 9.931930e-04	ci right 1.155128e-03	k: 686	n:640000
KS ci ratio: 5.518861e-03	ci left: 4.395925e-01	ci right 4.420268e-01	k: 282118	n:640000
WDR91   640000 perm   293 sec   (2186 perm/sec)   p_kst 4.408094e-01   p_cons 1.071875e-03   p_joint 3.001562e-03

Joint ci ratio: 8.859164e-02	ci left: 2.870001e-03	ci right 3.137536e-03	k: 1951	n:650000
Cons ci ratio: 1.485075e-01	ci left: 9.912430e-04	ci right 1.151719e-03	k: 695	n:650000
KS ci ratio: 5.476792e-03	ci left: 4.395525e-01	ci right 4.419680e-01	k: 286494	n:650000
WDR91   650000 perm   300 sec   (2167 perm/sec)   p_kst 4.407600e-01   p_cons 1.069231e-03   p_joint 3.001538e-03

Joint ci ratio: 8.807475e-02	ci left: 2.860594e-03	ci right 3.125616e-03	k: 1974	n:660000
Cons ci ratio: 1.475568e-01	ci left: 9.893554e-04	ci right 1.148409e-03	k: 704	n:660000
KS ci ratio: 5.433867e-03	ci left: 4.396775e-01	ci right 4.420746e-01	k: 290978	n:660000
WDR91   660000 perm   307 sec   (2149 perm/sec)   p_kst 4.408758e-01   p_cons 1.066667e-03   p_joint 2.990909e-03

Joint ci ratio: 8.785393e-02	ci left: 2.832494e-03	ci right 3.094221e-03	k: 1984	n:670000
Cons ci ratio: 1.466240e-01	ci left: 9.875273e-04	ci right 1.145196e-03	k: 713	n:670000
KS ci ratio: 5.393421e-03	ci left: 4.396629e-01	ci right 4.420421e-01	k: 295371	n:670000
WDR91   670000 perm   314 sec   (2132 perm/sec)   p_kst 4.408522e-01   p_cons 1.064179e-03   p_joint 2.961194e-03

Joint ci ratio: 7.857177e-02	ci left: 3.503724e-03	ci right 3.791706e-03	k: 2479	n:680000
Cons ci ratio: 1.454071e-01	ci left: 9.900073e-04	ci right 1.146646e-03	k: 725	n:680000
KS ci ratio: 5.352699e-03	ci left: 4.397562e-01	ci right 4.421178e-01	k: 299837	n:680000
WDR91   680000 perm   322 sec   (2115 perm/sec)   p_kst 4.409368e-01   p_cons 1.066176e-03   p_joint 3.645588e-03

Joint ci ratio: 7.792997e-02	ci left: 3.511204e-03	ci right 3.797336e-03	k: 2520	n:690000
Cons ci ratio: 1.442199e-01	ci left: 9.924206e-04	ci right 1.148049e-03	k: 737	n:690000
KS ci ratio: 5.313416e-03	ci left: 4.397976e-01	ci right 4.421420e-01	k: 304269	n:690000
WDR91   690000 perm   329 sec   (2098 perm/sec)   p_kst 4.409696e-01   p_cons 1.068116e-03   p_joint 3.652174e-03

Joint ci ratio: 7.739466e-02	ci left: 3.510073e-03	ci right 3.794059e-03	k: 2555	n:700000
Cons ci ratio: 1.435411e-01	ci left: 9.878830e-04	ci right 1.142008e-03	k: 744	n:700000
KS ci ratio: 5.276821e-03	ci left: 4.396665e-01	ci right 4.419940e-01	k: 308581	n:700000
WDR91   700000 perm   336 sec   (2081 perm/sec)   p_kst 4.408300e-01   p_cons 1.062857e-03   p_joint 3.650000e-03

Joint ci ratio: 7.694478e-02	ci left: 3.502073e-03	ci right 3.783691e-03	k: 2585	n:710000
Cons ci ratio: 1.419303e-01	ci left: 9.970581e-04	ci right 1.150721e-03	k: 761	n:710000
KS ci ratio: 5.238769e-03	ci left: 4.397461e-01	ci right 4.420572e-01	k: 313040	n:710000
WDR91   710000 perm   344 sec   (2064 perm/sec)   p_kst 4.409014e-01   p_cons 1.071831e-03   p_joint 3.640845e-03

Joint ci ratio: 7.782757e-02	ci left: 3.374427e-03	ci right 3.649036e-03	k: 2527	n:720000
Cons ci ratio: 1.414675e-01	ci left: 9.899081e-04	ci right 1.141930e-03	k: 766	n:720000
KS ci ratio: 5.202423e-03	ci left: 4.397388e-01	ci right 4.420339e-01	k: 317438	n:720000
WDR91   720000 perm   352 sec   (2048 perm/sec)   p_kst 4.408861e-01   p_cons 1.063889e-03   p_joint 3.509722e-03

Joint ci ratio: 7.762941e-02	ci left: 3.345662e-03	ci right 3.617205e-03	k: 2540	n:730000
Cons ci ratio: 1.409178e-01	ci left: 9.842763e-04	ci right 1.134797e-03	k: 772	n:730000
KS ci ratio: 5.166350e-03	ci left: 4.397770e-01	ci right 4.420563e-01	k: 321869	n:730000
WDR91   730000 perm   359 sec   (2032 perm/sec)   p_kst 4.409164e-01   p_cons 1.057534e-03   p_joint 3.479452e-03

Joint ci ratio: 7.221356e-02	ci left: 3.822953e-03	ci right 4.110681e-03	k: 2934	n:740000
Cons ci ratio: 1.398365e-01	ci left: 9.866221e-04	ci right 1.136247e-03	k: 784	n:740000
KS ci ratio: 5.130370e-03	ci left: 4.398764e-01	ci right 4.421403e-01	k: 326346	n:740000
WDR91   740000 perm   367 sec   (2016 perm/sec)   p_kst 4.410081e-01   p_cons 1.059459e-03   p_joint 3.964865e-03

Joint ci ratio: 7.162980e-02	ci left: 3.834830e-03	ci right 4.121022e-03	k: 2982	n:750000
Cons ci ratio: 1.390418e-01	ci left: 9.850484e-04	ci right 1.133515e-03	k: 793	n:750000
KS ci ratio: 5.095434e-03	ci left: 4.399439e-01	ci right 4.421926e-01	k: 330801	n:750000
WDR91   750000 perm   375 sec   (2000 perm/sec)   p_kst 4.410680e-01   p_cons 1.057333e-03   p_joint 3.976000e-03

Joint ci ratio: 7.191054e-02	ci left: 3.754647e-03	ci right 4.035998e-03	k: 2959	n:760000
Cons ci ratio: 1.380028e-01	ci left: 9.873296e-04	ci right 1.134937e-03	k: 805	n:760000
KS ci ratio: 5.061512e-03	ci left: 4.399793e-01	ci right 4.422132e-01	k: 335233	n:760000
WDR91   760000 perm   383 sec   (1985 perm/sec)   p_kst 4.410961e-01   p_cons 1.059211e-03   p_joint 3.893421e-03

Joint ci ratio: 7.094443e-02	ci left: 3.809205e-03	ci right 4.090651e-03	k: 3040	n:770000
Cons ci ratio: 1.366526e-01	ci left: 9.945727e-04	ci right 1.141690e-03	k: 821	n:770000
KS ci ratio: 5.028763e-03	ci left: 4.399646e-01	ci right 4.421839e-01	k: 339627	n:770000
WDR91   770000 perm   391 sec   (1970 perm/sec)   p_kst 4.410740e-01   p_cons 1.066234e-03   p_joint 3.948052e-03

Joint ci ratio: 7.047089e-02	ci left: 3.812004e-03	ci right 4.091700e-03	k: 3081	n:780000
Cons ci ratio: 1.359927e-01	ci left: 9.917283e-04	ci right 1.137659e-03	k: 829	n:780000
KS ci ratio: 4.996563e-03	ci left: 4.399580e-01	ci right 4.421630e-01	k: 344027	n:780000
WDR91   780000 perm   399 sec   (1955 perm/sec)   p_kst 4.410603e-01   p_cons 1.062821e-03   p_joint 3.950000e-03

Joint ci ratio: 7.093628e-02	ci left: 3.714006e-03	ci right 3.988386e-03	k: 3041	n:790000
Cons ci ratio: 1.353422e-01	ci left: 9.889576e-04	ci right 1.133728e-03	k: 837	n:790000
KS ci ratio: 4.965687e-03	ci left: 4.398807e-01	ci right 4.420717e-01	k: 348371	n:790000
WDR91   790000 perm   407 sec   (1941 perm/sec)   p_kst 4.409759e-01   p_cons 1.059494e-03   p_joint 3.849367e-03

Joint ci ratio: 6.546068e-02	ci left: 4.316385e-03	ci right 4.609720e-03	k: 3569	n:800000
Cons ci ratio: 1.346214e-01	ci left: 9.874656e-04	ci right 1.131186e-03	k: 846	n:800000
KS ci ratio: 4.935052e-03	ci left: 4.398379e-01	ci right 4.420151e-01	k: 352741	n:800000
WDR91   800000 perm   415 sec   (1926 perm/sec)   p_kst 4.409263e-01   p_cons 1.057500e-03   p_joint 4.461250e-03

Joint ci ratio: 6.648018e-02	ci left: 4.131950e-03	ci right 4.417292e-03	k: 3461	n:810000
Cons ci ratio: 1.330588e-01	ci left: 9.991397e-04	ci right 1.142738e-03	k: 866	n:810000
KS ci ratio: 4.911048e-03	ci left: 4.391864e-01	ci right 4.413498e-01	k: 356617	n:810000
WDR91   810000 perm   424 sec   (1911 perm/sec)   p_kst 4.402679e-01   p_cons 1.069136e-03   p_joint 4.272840e-03

Joint ci ratio: 6.713748e-02	ci left: 4.001209e-03	ci right 4.280361e-03	k: 3394	n:820000
Cons ci ratio: 1.326012e-01	ci left: 9.940288e-04	ci right 1.136363e-03	k: 872	n:820000
KS ci ratio: 4.881092e-03	ci left: 4.391849e-01	ci right 4.413350e-01	k: 361013	n:820000
WDR91   820000 perm   432 sec   (1897 perm/sec)   p_kst 4.402598e-01   p_cons 1.063415e-03   p_joint 4.139024e-03

Joint ci ratio: 6.778370e-02	ci left: 3.877185e-03	ci right 4.150390e-03	k: 3330	n:830000
Cons ci ratio: 1.312544e-01	ci left: 1.003024e-03	ci right 1.145073e-03	k: 890	n:830000
KS ci ratio: 4.849851e-03	ci left: 4.393689e-01	ci right 4.415062e-01	k: 365563	n:830000
WDR91   830000 perm   441 sec   (1884 perm/sec)   p_kst 4.404373e-01   p_cons 1.072289e-03   p_joint 4.012048e-03

Joint ci ratio: 6.887324e-02	ci left: 3.709323e-03	ci right 3.975069e-03	k: 3226	n:840000
Cons ci ratio: 1.301629e-01	ci left: 1.008357e-03	ci right 1.149882e-03	k: 905	n:840000
KS ci ratio: 4.821541e-03	ci left: 4.393094e-01	ci right 4.414338e-01	k: 369912	n:840000
WDR91   840000 perm   449 sec   (1870 perm/sec)   p_kst 4.403714e-01   p_cons 1.077381e-03   p_joint 3.840476e-03

Joint ci ratio: 6.969249e-02	ci left: 3.578969e-03	ci right 3.838549e-03	k: 3151	n:850000
Cons ci ratio: 1.293093e-01	ci left: 1.010153e-03	ci right 1.150930e-03	k: 917	n:850000
KS ci ratio: 4.792109e-03	ci left: 4.394172e-01	ci right 4.415291e-01	k: 374402	n:850000
WDR91   850000 perm   458 sec   (1857 perm/sec)   p_kst 4.404729e-01   p_cons 1.078824e-03   p_joint 3.707059e-03

Joint ci ratio: 6.957226e-02	ci left: 3.549919e-03	ci right 3.806930e-03	k: 3162	n:860000
Cons ci ratio: 1.283342e-01	ci left: 1.014162e-03	ci right 1.154350e-03	k: 931	n:860000
KS ci ratio: 4.763905e-03	ci left: 4.394504e-01	ci right 4.415500e-01	k: 378830	n:860000
WDR91   860000 perm   466 sec   (1844 perm/sec)   p_kst 4.405000e-01   p_cons 1.082558e-03   p_joint 3.676744e-03

Joint ci ratio: 6.966221e-02	ci left: 3.500077e-03	ci right 3.753820e-03	k: 3154	n:870000
Cons ci ratio: 1.277191e-01	ci left: 1.012518e-03	ci right 1.151758e-03	k: 940	n:870000
KS ci ratio: 4.735773e-03	ci left: 4.395265e-01	ci right 4.416141e-01	k: 383296	n:870000
WDR91   870000 perm   475 sec   (1831 perm/sec)   p_kst 4.405701e-01   p_cons 1.080460e-03   p_joint 3.625287e-03

Joint ci ratio: 6.941019e-02	ci left: 3.485985e-03	ci right 3.737755e-03	k: 3177	n:880000
Cons ci ratio: 1.271799e-01	ci left: 1.009813e-03	ci right 1.148050e-03	k: 948	n:880000
KS ci ratio: 4.709144e-03	ci left: 4.394953e-01	ci right 4.415710e-01	k: 387669	n:880000
WDR91   880000 perm   484 sec   (1817 perm/sec)   p_kst 4.405330e-01   p_cons 1.077273e-03   p_joint 3.610227e-03

Joint ci ratio: 6.456484e-02	ci left: 3.991514e-03	ci right 4.258920e-03	k: 3670	n:890000
Cons ci ratio: 1.265151e-01	ci left: 1.009346e-03	ci right 1.146743e-03	k: 958	n:890000
KS ci ratio: 4.683001e-03	ci left: 4.394604e-01	ci right 4.415243e-01	k: 392038	n:890000
WDR91   890000 perm   493 sec   (1805 perm/sec)   p_kst 4.404921e-01   p_cons 1.076404e-03   p_joint 4.123596e-03

Joint ci ratio: 6.426817e-02	ci left: 3.984333e-03	ci right 4.249985e-03	k: 3704	n:900000
Cons ci ratio: 1.258607e-01	ci left: 1.008892e-03	ci right 1.145463e-03	k: 968	n:900000
KS ci ratio: 4.657982e-03	ci left: 4.393529e-01	ci right 4.414053e-01	k: 396341	n:900000
WDR91   900000 perm   502 sec   (1794 perm/sec)   p_kst 4.403789e-01   p_cons 1.075556e-03   p_joint 4.115556e-03

Joint ci ratio: 6.046294e-02	ci left: 4.458753e-03	ci right 4.737821e-03	k: 4183	n:910000
Cons ci ratio: 1.252803e-01	ci left: 1.007384e-03	ci right 1.143076e-03	k: 977	n:910000
KS ci ratio: 4.632078e-03	ci left: 4.393841e-01	ci right 4.414251e-01	k: 400768	n:910000
WDR91   910000 perm   511 sec   (1782 perm/sec)   p_kst 4.404044e-01   p_cons 1.073626e-03   p_joint 4.596703e-03

Joint ci ratio: 6.016902e-02	ci left: 4.454181e-03	ci right 4.731561e-03	k: 4224	n:920000
Cons ci ratio: 1.248346e-01	ci left: 1.003805e-03	ci right 1.138498e-03	k: 984	n:920000
KS ci ratio: 4.607394e-03	ci left: 4.393298e-01	ci right 4.413597e-01	k: 405117	n:920000
WDR91   920000 perm   520 sec   (1770 perm/sec)   p_kst 4.403446e-01   p_cons 1.069565e-03   p_joint 4.591304e-03

Joint ci ratio: 6.071425e-02	ci left: 4.326852e-03	ci right 4.598829e-03	k: 4149	n:930000
Cons ci ratio: 1.246455e-01	ci left: 9.961365e-04	ci right 1.129583e-03	k: 987	n:930000
KS ci ratio: 4.581871e-03	ci left: 4.394090e-01	ci right 4.414280e-01	k: 409589	n:930000
WDR91   930000 perm   529 sec   (1758 perm/sec)   p_kst 4.404183e-01   p_cons 1.061290e-03   p_joint 4.461290e-03

Joint ci ratio: 6.040942e-02	ci left: 4.324826e-03	ci right 4.595263e-03	k: 4191	n:940000
Cons ci ratio: 1.239573e-01	ci left: 9.968776e-04	ci right 1.129632e-03	k: 998	n:940000
KS ci ratio: 4.557535e-03	ci left: 4.394035e-01	ci right 4.414117e-01	k: 413983	n:940000
WDR91   940000 perm   538 sec   (1746 perm/sec)   p_kst 4.404074e-01   p_cons 1.061702e-03   p_joint 4.458511e-03

Joint ci ratio: 6.057069e-02	ci left: 4.256489e-03	ci right 4.523389e-03	k: 4169	n:950000
Cons ci ratio: 1.230368e-01	ci left: 1.001686e-03	ci right 1.134018e-03	k: 1013	n:950000
KS ci ratio: 4.534260e-03	ci left: 4.393246e-01	ci right 4.413221e-01	k: 418307	n:950000
WDR91   950000 perm   548 sec   (1735 perm/sec)   p_kst 4.403232e-01   p_cons 1.066316e-03   p_joint 4.388421e-03

Joint ci ratio: 6.126202e-02	ci left: 4.116742e-03	ci right 4.377930e-03	k: 4076	n:960000
Cons ci ratio: 1.224346e-01	ci left: 1.001349e-03	ci right 1.132942e-03	k: 1023	n:960000
KS ci ratio: 4.509707e-03	ci left: 4.394253e-01	ci right 4.414125e-01	k: 422802	n:960000
WDR91   960000 perm   557 sec   (1723 perm/sec)   p_kst 4.404188e-01   p_cons 1.065625e-03   p_joint 4.245833e-03

Joint ci ratio: 6.169799e-02	ci left: 4.016436e-03	ci right 4.273137e-03	k: 4019	n:970000
Cons ci ratio: 1.217234e-01	ci left: 1.003019e-03	ci right 1.134010e-03	k: 1035	n:970000
KS ci ratio: 4.486947e-03	ci left: 4.393705e-01	ci right 4.413474e-01	k: 427148	n:970000
WDR91   970000 perm   567 sec   (1711 perm/sec)   p_kst 4.403588e-01   p_cons 1.067010e-03   p_joint 4.143299e-03

Joint ci ratio: 6.143135e-02	ci left: 4.010616e-03	ci right 4.265798e-03	k: 4054	n:980000
Cons ci ratio: 1.211402e-01	ci left: 1.002678e-03	ci right 1.132953e-03	k: 1045	n:980000
KS ci ratio: 4.463724e-03	ci left: 4.394056e-01	ci right 4.413723e-01	k: 431581	n:980000
WDR91   980000 perm   576 sec   (1700 perm/sec)   p_kst 4.403888e-01   p_cons 1.066327e-03   p_joint 4.136735e-03

Joint ci ratio: 6.124336e-02	ci left: 3.994969e-03	ci right 4.248350e-03	k: 4079	n:990000
Cons ci ratio: 1.204511e-01	ci left: 1.004305e-03	ci right 1.133996e-03	k: 1057	n:990000
KS ci ratio: 4.441550e-03	ci left: 4.393632e-01	ci right 4.413200e-01	k: 435938	n:990000
WDR91   990000 perm   586 sec   (1689 perm/sec)   p_kst 4.403414e-01   p_cons 1.067677e-03   p_joint 4.120202e-03

Joint ci ratio: 6.093053e-02	ci left: 3.996378e-03	ci right 4.248508e-03	k: 4121	n:1000000
Cons ci ratio: 1.199421e-01	ci left: 1.002991e-03	ci right 1.131927e-03	k: 1066	n:1000000
KS ci ratio: 4.418886e-03	ci left: 4.394127e-01	ci right 4.413597e-01	k: 440386	n:1000000
WDR91   1000000 perm   596 sec   (1678 perm/sec)   p_kst 4.403860e-01   p_cons 1.066000e-03   p_joint 4.121000e-03

Joint ci ratio: 6.085030e-02	ci left: 3.967533e-03	ci right 4.217502e-03	k: 4132	n:1010000
Cons ci ratio: 1.197184e-01	ci left: 9.969022e-04	ci right 1.124799e-03	k: 1070	n:1010000
KS ci ratio: 4.397158e-03	ci left: 4.393949e-01	ci right 4.413322e-01	k: 444767	n:1010000
WDR91   1010000 perm   606 sec   (1667 perm/sec)   p_kst 4.403634e-01   p_cons 1.059406e-03   p_joint 4.091089e-03

Joint ci ratio: 6.109692e-02	ci left: 3.896772e-03	ci right 4.143313e-03	k: 4099	n:1020000
Cons ci ratio: 1.192739e-01	ci left: 9.947373e-04	ci right 1.121849e-03	k: 1078	n:1020000
KS ci ratio: 4.375713e-03	ci left: 4.393814e-01	ci right 4.413092e-01	k: 449152	n:1020000
WDR91   1020000 perm   616 sec   (1656 perm/sec)   p_kst 4.403451e-01   p_cons 1.056863e-03   p_joint 4.018627e-03

Joint ci ratio: 6.099365e-02	ci left: 3.872322e-03	ci right 4.116888e-03	k: 4113	n:1030000
Cons ci ratio: 1.189988e-01	ci left: 9.897892e-04	ci right 1.115956e-03	k: 1083	n:1030000
KS ci ratio: 4.354467e-03	ci left: 4.393808e-01	ci right 4.412992e-01	k: 453550	n:1030000
WDR91   1030000 perm   626 sec   (1645 perm/sec)   p_kst 4.403398e-01   p_cons 1.051456e-03   p_joint 3.993204e-03

Joint ci ratio: 6.138554e-02	ci left: 3.785848e-03	ci right 4.026543e-03	k: 4061	n:1040000
Cons ci ratio: 1.185622e-01	ci left: 9.877357e-04	ci right 1.113147e-03	k: 1091	n:1040000
KS ci ratio: 4.332850e-03	ci left: 4.394571e-01	ci right 4.413663e-01	k: 458028	n:1040000
WDR91   1040000 perm   636 sec   (1635 perm/sec)   p_kst 4.404115e-01   p_cons 1.049038e-03   p_joint 3.904808e-03

Joint ci ratio: 5.914120e-02	ci left: 4.043413e-03	ci right 4.290763e-03	k: 4374	n:1050000
Cons ci ratio: 1.178626e-01	ci left: 9.903436e-04	ci right 1.115292e-03	k: 1104	n:1050000
KS ci ratio: 4.311886e-03	ci left: 4.394939e-01	ci right 4.413940e-01	k: 462466	n:1050000
WDR91   1050000 perm   646 sec   (1625 perm/sec)   p_kst 4.404438e-01   p_cons 1.051429e-03   p_joint 4.165714e-03

Joint ci ratio: 6.004484e-02	ci left: 3.884444e-03	ci right 4.125826e-03	k: 4244	n:1060000
Cons ci ratio: 1.171752e-01	ci left: 9.929045e-04	ci right 1.117395e-03	k: 1117	n:1060000
KS ci ratio: 4.291765e-03	ci left: 4.394678e-01	ci right 4.413589e-01	k: 466838	n:1060000
WDR91   1060000 perm   656 sec   (1615 perm/sec)   p_kst 4.404132e-01   p_cons 1.053774e-03   p_joint 4.003774e-03

Joint ci ratio: 6.043310e-02	ci left: 3.798428e-03	ci right 4.036045e-03	k: 4190	n:1070000
Cons ci ratio: 1.169144e-01	ci left: 9.881610e-04	ci right 1.111762e-03	k: 1122	n:1070000
KS ci ratio: 4.271308e-03	ci left: 4.395133e-01	ci right 4.413955e-01	k: 471286	n:1070000
WDR91   1070000 perm   667 sec   (1605 perm/sec)   p_kst 4.404542e-01   p_cons 1.048598e-03   p_joint 3.915888e-03

Joint ci ratio: 6.020389e-02	ci left: 3.792440e-03	ci right 4.028751e-03	k: 4222	n:1080000
Cons ci ratio: 1.165519e-01	ci left: 9.853035e-04	ci right 1.108138e-03	k: 1129	n:1080000
KS ci ratio: 4.251788e-03	ci left: 4.394829e-01	ci right 4.413563e-01	k: 475653	n:1080000
WDR91   1080000 perm   677 sec   (1595 perm/sec)   p_kst 4.404194e-01   p_cons 1.045370e-03   p_joint 3.909259e-03

Joint ci ratio: 6.009792e-02	ci left: 3.771200e-03	ci right 4.005760e-03	k: 4237	n:1090000
Cons ci ratio: 1.161927e-01	ci left: 9.824990e-04	ci right 1.104581e-03	k: 1136	n:1090000
KS ci ratio: 4.232627e-03	ci left: 4.394421e-01	ci right 4.413069e-01	k: 480008	n:1090000
WDR91   1090000 perm   688 sec   (1585 perm/sec)   p_kst 4.403743e-01   p_cons 1.042202e-03   p_joint 3.887156e-03

Joint ci ratio: 6.023469e-02	ci left: 3.719901e-03	ci right 3.951815e-03	k: 4218	n:1100000
Cons ci ratio: 1.153834e-01	ci left: 9.876915e-04	ci right 1.109506e-03	k: 1152	n:1100000
KS ci ratio: 4.212852e-03	ci left: 4.395038e-01	ci right 4.413601e-01	k: 484475	n:1100000
WDR91   1100000 perm   698 sec   (1576 perm/sec)   p_kst 4.404318e-01   p_cons 1.047273e-03   p_joint 3.834545e-03

Joint ci ratio: 6.014992e-02	ci left: 3.697035e-03	ci right 3.927188e-03	k: 4230	n:1110000
Cons ci ratio: 1.149854e-01	ci left: 9.857929e-04	ci right 1.106925e-03	k: 1160	n:1110000
KS ci ratio: 4.193697e-03	ci left: 4.395239e-01	ci right 4.413719e-01	k: 488897	n:1110000
WDR91   1110000 perm   709 sec   (1567 perm/sec)   p_kst 4.404477e-01   p_cons 1.045045e-03   p_joint 3.810811e-03

Joint ci ratio: 6.017237e-02	ci left: 3.661386e-03	ci right 3.889407e-03	k: 4227	n:1120000
Cons ci ratio: 1.144444e-01	ci left: 9.865308e-04	ci right 1.107145e-03	k: 1171	n:1120000
KS ci ratio: 4.175247e-03	ci left: 4.394910e-01	ci right 4.413307e-01	k: 493260	n:1120000
WDR91   1120000 perm   719 sec   (1557 perm/sec)   p_kst 4.404107e-01   p_cons 1.045536e-03   p_joint 3.774107e-03

Joint ci ratio: 5.998852e-02	ci left: 3.651647e-03	ci right 3.878342e-03	k: 4253	n:1130000
Cons ci ratio: 1.142014e-01	ci left: 9.820986e-04	ci right 1.101898e-03	k: 1176	n:1130000
KS ci ratio: 4.156710e-03	ci left: 4.394977e-01	ci right 4.413292e-01	k: 497667	n:1130000
WDR91   1130000 perm   730 sec   (1548 perm/sec)   p_kst 4.404133e-01   p_cons 1.040708e-03   p_joint 3.763717e-03

Joint ci ratio: 5.968747e-02	ci left: 3.656770e-03	ci right 3.882605e-03	k: 4296	n:1140000
Cons ci ratio: 1.137673e-01	ci left: 9.811533e-04	ci right 1.100352e-03	k: 1185	n:1140000
KS ci ratio: 4.138152e-03	ci left: 4.395358e-01	ci right 4.413593e-01	k: 502110	n:1140000
WDR91   1140000 perm   741 sec   (1539 perm/sec)   p_kst 4.404474e-01   p_cons 1.039474e-03   p_joint 3.768421e-03

Joint ci ratio: 5.940465e-02	ci left: 3.660093e-03	ci right 3.885026e-03	k: 4337	n:1150000
Cons ci ratio: 1.133857e-01	ci left: 9.793804e-04	ci right 1.097938e-03	k: 1193	n:1150000
KS ci ratio: 4.119986e-03	ci left: 4.395559e-01	ci right 4.413714e-01	k: 506533	n:1150000
WDR91   1150000 perm   752 sec   (1529 perm/sec)   p_kst 4.404635e-01   p_cons 1.037391e-03   p_joint 3.771304e-03

Joint ci ratio: 5.918010e-02	ci left: 3.656567e-03	ci right 3.880405e-03	k: 4370	n:1160000
Cons ci ratio: 1.130549e-01	ci left: 9.768010e-04	ci right 1.094679e-03	k: 1200	n:1160000
KS ci ratio: 4.102330e-03	ci left: 4.395429e-01	ci right 4.413505e-01	k: 510918	n:1160000
WDR91   1160000 perm   763 sec   (1520 perm/sec)   p_kst 4.404466e-01   p_cons 1.034483e-03   p_joint 3.767241e-03

Joint ci ratio: 5.920145e-02	ci left: 3.622786e-03	ci right 3.844639e-03	k: 4367	n:1170000
Cons ci ratio: 1.125872e-01	ci left: 9.767581e-04	ci right 1.094111e-03	k: 1210	n:1170000
KS ci ratio: 4.084644e-03	ci left: 4.395609e-01	ci right 4.413608e-01	k: 515339	n:1170000
WDR91   1170000 perm   774 sec   (1511 perm/sec)   p_kst 4.404607e-01   p_cons 1.034188e-03   p_joint 3.732479e-03

Joint ci ratio: 5.589504e-02	ci left: 4.034803e-03	ci right 4.267642e-03	k: 4897	n:1180000
Cons ci ratio: 1.118504e-01	ci left: 9.816593e-04	ci right 1.098778e-03	k: 1226	n:1180000
KS ci ratio: 4.067080e-03	ci left: 4.395913e-01	ci right 4.413836e-01	k: 519775	n:1180000
WDR91   1180000 perm   785 sec   (1503 perm/sec)   p_kst 4.404873e-01   p_cons 1.038983e-03   p_joint 4.150000e-03

Joint ci ratio: 5.586167e-02	ci left: 4.005867e-03	ci right 4.236893e-03	k: 4903	n:1190000
Cons ci ratio: 1.111727e-01	ci left: 9.856637e-04	ci right 1.102501e-03	k: 1241	n:1190000
KS ci ratio: 4.049823e-03	ci left: 4.396111e-01	ci right 4.413959e-01	k: 524199	n:1190000
WDR91   1190000 perm   796 sec   (1494 perm/sec)   p_kst 4.405034e-01   p_cons 1.042857e-03   p_joint 4.120168e-03

Joint ci ratio: 5.568052e-02	ci left: 3.998779e-03	ci right 4.228625e-03	k: 4935	n:1200000
Cons ci ratio: 1.108165e-01	ci left: 9.839314e-04	ci right 1.100165e-03	k: 1249	n:1200000
KS ci ratio: 4.032416e-03	ci left: 4.396756e-01	ci right 4.414530e-01	k: 528677	n:1200000
WDR91   1200000 perm   808 sec   (1486 perm/sec)   p_kst 4.405642e-01   p_cons 1.040833e-03   p_joint 4.112500e-03

Joint ci ratio: 5.573251e-02	ci left: 3.958394e-03	ci right 4.186138e-03	k: 4926	n:1210000
Cons ci ratio: 1.105077e-01	ci left: 9.814246e-04	ci right 1.097018e-03	k: 1256	n:1210000
KS ci ratio: 4.015104e-03	ci left: 4.397548e-01	ci right 4.415248e-01	k: 533174	n:1210000
WDR91   1210000 perm   819 sec   (1477 perm/sec)   p_kst 4.406397e-01   p_cons 1.038017e-03   p_joint 4.071074e-03

Joint ci ratio: 5.553574e-02	ci left: 3.954238e-03	ci right 4.180913e-03	k: 4961	n:1220000
Cons ci ratio: 1.099839e-01	ci left: 9.829450e-04	ci right 1.098133e-03	k: 1268	n:1220000
KS ci ratio: 3.999216e-03	ci left: 4.396844e-01	ci right 4.414471e-01	k: 537490	n:1220000
WDR91   1220000 perm   831 sec   (1469 perm/sec)   p_kst 4.405656e-01   p_cons 1.039344e-03   p_joint 4.066393e-03

Joint ci ratio: 5.546376e-02	ci left: 3.932511e-03	ci right 4.157639e-03	k: 4974	n:1230000
Cons ci ratio: 1.093394e-01	ci left: 9.868144e-04	ci right 1.101735e-03	k: 1283	n:1230000
KS ci ratio: 3.983508e-03	ci left: 4.396159e-01	ci right 4.413714e-01	k: 541807	n:1230000
WDR91   1230000 perm   842 sec   (1461 perm/sec)   p_kst 4.404935e-01   p_cons 1.043089e-03   p_joint 4.043902e-03

Joint ci ratio: 5.422032e-02	ci left: 4.083746e-03	ci right 4.312128e-03	k: 5204	n:1240000
Cons ci ratio: 1.089582e-01	ci left: 9.859161e-04	ci right 1.100306e-03	k: 1292	n:1240000
KS ci ratio: 3.967166e-03	ci left: 4.396501e-01	ci right 4.413985e-01	k: 546250	n:1240000
WDR91   1240000 perm   853 sec   (1453 perm/sec)   p_kst 4.405242e-01   p_cons 1.041935e-03   p_joint 4.196774e-03

Joint ci ratio: 5.415337e-02	ci left: 4.061334e-03	ci right 4.288173e-03	k: 5217	n:1250000
Cons ci ratio: 1.086646e-01	ci left: 9.834763e-04	ci right 1.097256e-03	k: 1299	n:1250000
KS ci ratio: 3.951274e-03	ci left: 4.396526e-01	ci right 4.413940e-01	k: 550654	n:1250000
WDR91   1250000 perm   865 sec   (1445 perm/sec)   p_kst 4.405232e-01   p_cons 1.039200e-03   p_joint 4.173600e-03

Joint ci ratio: 5.394188e-02	ci left: 4.061201e-03	ci right 4.287119e-03	k: 5258	n:1260000
Cons ci ratio: 1.082905e-01	ci left: 9.826199e-04	ci right 1.095884e-03	k: 1308	n:1260000
KS ci ratio: 3.935121e-03	ci left: 4.397115e-01	ci right 4.414460e-01	k: 555129	n:1260000
WDR91   1260000 perm   877 sec   (1437 perm/sec)   p_kst 4.405786e-01   p_cons 1.038095e-03   p_joint 4.173016e-03

Joint ci ratio: 5.371758e-02	ci left: 4.063403e-03	ci right 4.288474e-03	k: 5302	n:1270000
Cons ci ratio: 1.078383e-01	ci left: 9.833101e-04	ci right 1.096151e-03	k: 1319	n:1270000
KS ci ratio: 3.919289e-03	ci left: 4.397536e-01	ci right 4.414813e-01	k: 559584	n:1270000
WDR91   1270000 perm   889 sec   (1429 perm/sec)   p_kst 4.406173e-01   p_cons 1.038583e-03   p_joint 4.174803e-03

Joint ci ratio: 5.346595e-02	ci left: 4.070197e-03	ci right 4.294556e-03	k: 5352	n:1280000
Cons ci ratio: 1.075131e-01	ci left: 9.817096e-04	ci right 1.094005e-03	k: 1327	n:1280000
KS ci ratio: 3.904223e-03	ci left: 4.397225e-01	ci right 4.414434e-01	k: 563946	n:1280000
WDR91   1280000 perm   900 sec   (1422 perm/sec)   p_kst 4.405828e-01   p_cons 1.036719e-03   p_joint 4.181250e-03

Joint ci ratio: 5.328718e-02	ci left: 4.066179e-03	ci right 4.289544e-03	k: 5388	n:1290000
Cons ci ratio: 1.071507e-01	ci left: 9.808889e-04	ci right 1.092689e-03	k: 1336	n:1290000
KS ci ratio: 3.889464e-03	ci left: 4.396748e-01	ci right 4.413890e-01	k: 568286	n:1290000
WDR91   1290000 perm   912 sec   (1414 perm/sec)   p_kst 4.405318e-01   p_cons 1.035659e-03   p_joint 4.176744e-03

Joint ci ratio: 5.312004e-02	ci left: 4.060706e-03	ci right 4.283050e-03	k: 5422	n:1300000
Cons ci ratio: 1.067522e-01	ci left: 9.808302e-04	ci right 1.092181e-03	k: 1346	n:1300000
KS ci ratio: 3.874568e-03	ci left: 4.396664e-01	ci right 4.413739e-01	k: 572676	n:1300000
WDR91   1300000 perm   924 sec   (1406 perm/sec)   p_kst 4.405200e-01   p_cons 1.035385e-03   p_joint 4.170769e-03

Joint ci ratio: 5.293497e-02	ci left: 4.058332e-03	ci right 4.279747e-03	k: 5460	n:1310000
Cons ci ratio: 1.063582e-01	ci left: 9.807730e-04	ci right 1.091681e-03	k: 1356	n:1310000
KS ci ratio: 3.860003e-03	ci left: 4.396374e-01	ci right 4.413384e-01	k: 577039	n:1310000
WDR91   1310000 perm   936 sec   (1399 perm/sec)   p_kst 4.404878e-01   p_cons 1.035115e-03   p_joint 4.167939e-03

Joint ci ratio: 5.305300e-02	ci left: 4.009643e-03	ci right 4.228905e-03	k: 5436	n:1320000
Cons ci ratio: 1.060462e-01	ci left: 9.792425e-04	ci right 1.089632e-03	k: 1364	n:1320000
KS ci ratio: 3.844993e-03	ci left: 4.396869e-01	ci right 4.413815e-01	k: 581505	n:1320000
WDR91   1320000 perm   948 sec   (1392 perm/sec)   p_kst 4.405341e-01   p_cons 1.033333e-03   p_joint 4.118182e-03

Joint ci ratio: 5.325087e-02	ci left: 3.949817e-03	ci right 4.166637e-03	k: 5396	n:1330000
Cons ci ratio: 1.054298e-01	ci left: 9.835918e-04	ci right 1.093788e-03	k: 1380	n:1330000
KS ci ratio: 3.830525e-03	ci left: 4.396884e-01	ci right 4.413766e-01	k: 585908	n:1330000
WDR91   1330000 perm   960 sec   (1385 perm/sec)   p_kst 4.405323e-01   p_cons 1.037594e-03   p_joint 4.057143e-03

Joint ci ratio: 5.000201e-02	ci left: 4.451489e-03	ci right 4.680511e-03	k: 6117	n:1340000
Cons ci ratio: 1.050124e-01	ci left: 9.842446e-04	ci right 1.094050e-03	k: 1391	n:1340000
KS ci ratio: 3.815947e-03	ci left: 4.397249e-01	ci right 4.414067e-01	k: 590358	n:1340000
WDR91   1340000 perm   973 sec   (1378 perm/sec)   p_kst 4.405657e-01   p_cons 1.038060e-03   p_joint 4.564925e-03

Joint ci ratio: 5.014302e-02	ci left: 4.393642e-03	ci right 4.620344e-03	k: 6083	n:1350000
Cons ci ratio: 1.045999e-01	ci left: 9.848884e-04	ci right 1.094307e-03	k: 1402	n:1350000
KS ci ratio: 3.801369e-03	ci left: 4.397823e-01	ci right 4.414580e-01	k: 594837	n:1350000
WDR91   1350000 perm   985 sec   (1371 perm/sec)   p_kst 4.406200e-01   p_cons 1.038519e-03   p_joint 4.505926e-03

Joint ci ratio: 5.024766e-02	ci left: 4.343181e-03	ci right 4.567761e-03	k: 6058	n:1360000
Cons ci ratio: 1.042291e-01	ci left: 9.848075e-04	ci right 1.093806e-03	k: 1412	n:1360000
KS ci ratio: 3.787278e-03	ci left: 4.397970e-01	ci right 4.414665e-01	k: 599259	n:1360000
WDR91   1360000 perm   997 sec   (1363 perm/sec)   p_kst 4.406316e-01   p_cons 1.038235e-03   p_joint 4.454412e-03

Joint ci ratio: 5.000863e-02	ci left: 4.353285e-03	ci right 4.577285e-03	k: 6116	n:1370000
Cons ci ratio: 1.038623e-01	ci left: 9.847285e-04	ci right 1.093311e-03	k: 1422	n:1370000
KS ci ratio: 3.773298e-03	ci left: 4.398173e-01	ci right 4.414807e-01	k: 603689	n:1370000
WDR91   1370000 perm   1010 sec   (1357 perm/sec)   p_kst 4.406489e-01   p_cons 1.037956e-03   p_joint 4.464234e-03

Joint ci ratio: 4.982569e-02	ci left: 4.353941e-03	ci right 4.577132e-03	k: 6161	n:1380000
Cons ci ratio: 1.035354e-01	ci left: 9.839453e-04	ci right 1.092079e-03	k: 1431	n:1380000
KS ci ratio: 3.759605e-03	ci left: 4.398200e-01	ci right 4.414774e-01	k: 608095	n:1380000
WDR91   1380000 perm   1023 sec   (1350 perm/sec)   p_kst 4.406486e-01   p_cons 1.036957e-03   p_joint 4.464493e-03

Joint ci ratio: 4.967690e-02	ci left: 4.348905e-03	ci right 4.571153e-03	k: 6198	n:1390000
Cons ci ratio: 1.033553e-01	ci left: 9.803706e-04	ci right 1.087913e-03	k: 1436	n:1390000
KS ci ratio: 3.746207e-03	ci left: 4.398032e-01	ci right 4.414546e-01	k: 612474	n:1390000
WDR91   1390000 perm   1035 sec   (1343 perm/sec)   p_kst 4.406288e-01   p_cons 1.033094e-03   p_joint 4.458993e-03

Joint ci ratio: 4.948165e-02	ci left: 4.352408e-03	ci right 4.573936e-03	k: 6247	n:1400000
Cons ci ratio: 1.029264e-01	ci left: 9.817183e-04	ci right 1.088935e-03	k: 1448	n:1400000
KS ci ratio: 3.732583e-03	ci left: 4.398352e-01	ci right 4.414807e-01	k: 616921	n:1400000
WDR91   1400000 perm   1048 sec   (1336 perm/sec)   p_kst 4.406579e-01   p_cons 1.034286e-03   p_joint 4.462143e-03

Joint ci ratio: 4.968653e-02	ci left: 4.285814e-03	ci right 4.504882e-03	k: 6196	n:1410000
Cons ci ratio: 1.025731e-01	ci left: 9.816657e-04	ci right 1.088486e-03	k: 1458	n:1410000
KS ci ratio: 3.719316e-03	ci left: 4.398392e-01	ci right 4.414788e-01	k: 621329	n:1410000
WDR91   1410000 perm   1061 sec   (1329 perm/sec)   p_kst 4.406589e-01   p_cons 1.034043e-03   p_joint 4.394326e-03

Joint ci ratio: 4.956295e-02	ci left: 4.277192e-03	ci right 4.495259e-03	k: 6227	n:1420000
Cons ci ratio: 1.023980e-01	ci left: 9.781833e-04	ci right 1.084432e-03	k: 1463	n:1420000
KS ci ratio: 3.705591e-03	ci left: 4.399226e-01	ci right 4.415565e-01	k: 625850	n:1420000
WDR91   1420000 perm   1074 sec   (1323 perm/sec)   p_kst 4.407394e-01   p_cons 1.030282e-03   p_joint 4.385211e-03

Joint ci ratio: 5.095033e-02	ci left: 4.017326e-03	ci right 4.228046e-03	k: 5894	n:1430000
Cons ci ratio: 1.019808e-01	ci left: 9.795200e-04	ci right 1.085455e-03	k: 1475	n:1430000
KS ci ratio: 3.692284e-03	ci left: 4.399693e-01	ci right 4.415974e-01	k: 630320	n:1430000
WDR91   1430000 perm   1086 sec   (1316 perm/sec)   p_kst 4.407832e-01   p_cons 1.031469e-03   p_joint 4.121678e-03

Joint ci ratio: 5.099886e-02	ci left: 3.981885e-03	ci right 4.190951e-03	k: 5883	n:1440000
Cons ci ratio: 1.017400e-01	ci left: 9.774550e-04	ci right 1.082902e-03	k: 1482	n:1440000
KS ci ratio: 3.678964e-03	ci left: 4.400361e-01	ci right 4.416586e-01	k: 634820	n:1440000
WDR91   1440000 perm   1101 sec   (1308 perm/sec)   p_kst 4.408472e-01   p_cons 1.029167e-03   p_joint 4.085417e-03

Joint ci ratio: 5.113501e-02	ci left: 3.933315e-03	ci right 4.140398e-03	k: 5852	n:1450000
Cons ci ratio: 1.013308e-01	ci left: 9.787797e-04	ci right 1.083919e-03	k: 1494	n:1450000
KS ci ratio: 3.665673e-03	ci left: 4.401172e-01	ci right 4.417341e-01	k: 639342	n:1450000
WDR91   1450000 perm   1114 sec   (1302 perm/sec)   p_kst 4.409255e-01   p_cons 1.030345e-03   p_joint 4.035862e-03

Joint ci ratio: 5.099159e-02	ci left: 3.928688e-03	ci right 4.134931e-03	k: 5885	n:1460000
Cons ci ratio: 1.008595e-01	ci left: 9.814224e-04	ci right 1.086327e-03	k: 1508	n:1460000
KS ci ratio: 3.653252e-03	ci left: 4.400992e-01	ci right 4.417106e-01	k: 643721	n:1460000
WDR91   1460000 perm   1127 sec   (1296 perm/sec)   p_kst 4.409048e-01   p_cons 1.032877e-03   p_joint 4.030822e-03

Joint ci ratio: 5.081921e-02	ci left: 3.928827e-03	ci right 4.134359e-03	k: 5925	n:1470000
Cons ci ratio: 1.004608e-01	ci left: 9.827038e-04	ci right 1.087305e-03	k: 1520	n:1470000
KS ci ratio: 3.640965e-03	ci left: 4.400802e-01	ci right 4.416861e-01	k: 648098	n:1470000
WDR91   1470000 perm   1140 sec   (1290 perm/sec)   p_kst 4.408830e-01   p_cons 1.034014e-03   p_joint 4.030612e-03

Joint ci ratio: 5.061451e-02	ci left: 3.934302e-03	ci right 4.139268e-03	k: 5973	n:1480000
Cons ci ratio: 1.001977e-01	ci left: 9.813337e-04	ci right 1.085500e-03	k: 1528	n:1480000
KS ci ratio: 3.628718e-03	ci left: 4.400729e-01	ci right 4.416733e-01	k: 652492	n:1480000
WDR91   1480000 perm   1153 sec   (1284 perm/sec)   p_kst 4.408730e-01   p_cons 1.032432e-03   p_joint 4.035811e-03

Joint ci ratio: 5.096326e-02	ci left: 3.854222e-03	ci right 4.056439e-03	k: 5892	n:1490000
Cons ci ratio: 1.000018e-01	ci left: 9.786735e-04	ci right 1.082342e-03	k: 1534	n:1490000
KS ci ratio: 3.616155e-03	ci left: 4.401254e-01	ci right 4.417205e-01	k: 656975	n:1490000
WDR91   1490000 perm   1166 sec   (1277 perm/sec)   p_kst 4.409228e-01   p_cons 1.029530e-03   p_joint 3.954362e-03

Joint ci ratio: 5.079116e-02	ci left: 3.854854e-03	ci right 4.056402e-03	k: 5932	n:1500000
Cons ci ratio: 9.964540e-02	ci left: 9.792993e-04	ci right 1.082643e-03	k: 1545	n:1500000
KS ci ratio: 3.604243e-03	ci left: 4.401059e-01	ci right 4.416957e-01	k: 661351	n:1500000
WDR91   1500000 perm   1180 sec   (1271 perm/sec)   p_kst 4.409007e-01   p_cons 1.030000e-03   p_joint 3.954667e-03

Outputting figure to mutsig2_images.part000000000190/WDR91.4_2304_1500000_0.4409_0.00103_0.0039547.png
                gene_name: WDR91
               theta_stop: 0.100 
                    nperm: 1500000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.0010 
      ci_cons_bounds_left: 0.00098 
     ci_cons_bounds_right: 0.0011 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0041 

Current progress: 53 percent done.
WDR93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
KS ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
WDR93   10000 perm   2 sec   (5147 perm/sec)   p_kst 9.304000e-01   p_cons 9.660000e-02   p_joint 2.968000e-01

Joint ci ratio: 4.514190e-02	ci left: 2.675787e-01	ci right 2.799871e-01	k: 5475	n:20000
Cons ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
KS ci ratio: 7.367392e-03	ci left: 9.305217e-01	ci right 9.374515e-01	k: 18681	n:20000
WDR93   20000 perm   4 sec   (4886 perm/sec)   p_kst 9.340500e-01   p_cons 8.905000e-02   p_joint 2.737500e-01

Outputting figure to mutsig2_images.part000000000190/WDR93.4_2125_20000_0.93405_0.08905_0.27375.png
                gene_name: WDR93
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 55 percent done.
WBP2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
KS ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
WBP2NL   10000 perm   2 sec   (6268 perm/sec)   p_kst 3.503000e-01   p_cons 1.418000e-01   p_joint 3.029000e-01

Outputting figure to mutsig2_images.part000000000190/WBP2NL.3_954_10000_0.3503_0.1418_0.3029.png
                gene_name: WBP2NL
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 56 percent done.
WBSCR27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
Cons ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
KS ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
WBSCR27   10000 perm   2 sec   (6614 perm/sec)   p_kst 7.864000e-01   p_cons 7.253000e-01   p_joint 9.733000e-01

Outputting figure to mutsig2_images.part000000000190/WBSCR27.3_758_10000_0.7864_0.7253_0.9733.png
                gene_name: WBSCR27
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 58 percent done.
WDR25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
WDR25   10000 perm   2 sec   (5880 perm/sec)   p_kst 4.834000e-01   p_cons 4.870000e-01   p_joint 6.951000e-01

Outputting figure to mutsig2_images.part000000000190/WDR25.3_1659_10000_0.4834_0.487_0.6951.png
                gene_name: WDR25
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 59 percent done.
WDR27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
WDR27   10000 perm   2 sec   (5957 perm/sec)   p_kst 7.465000e-01   p_cons 1.200000e-03   p_joint 4.500000e-02

Joint ci ratio: 2.415168e-01	ci left: 1.142923e-02	ci right 1.461469e-02	k: 259	n:20000
Cons ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
KS ci ratio: 1.644703e-02	ci left: 7.334584e-01	ci right 7.456719e-01	k: 14792	n:20000
WDR27   20000 perm   4 sec   (5296 perm/sec)   p_kst 7.396000e-01   p_cons 1.550000e-03   p_joint 1.295000e-02

Joint ci ratio: 1.347532e-01	ci left: 2.558194e-02	ci right 2.931033e-02	k: 822	n:30000
Cons ci ratio: 5.484339e-01	ci left: 1.237277e-03	ci right 2.196709e-03	k: 50	n:30000
KS ci ratio: 1.337788e-02	ci left: 7.360699e-01	ci right 7.460167e-01	k: 22232	n:30000
WDR27   30000 perm   6 sec   (5082 perm/sec)   p_kst 7.410667e-01   p_cons 1.666667e-03   p_joint 2.740000e-02

Joint ci ratio: 1.584250e-01	ci left: 1.387966e-02	ci right 1.629149e-02	k: 602	n:40000
Cons ci ratio: 4.784970e-01	ci left: 1.276333e-03	ci right 2.098733e-03	k: 66	n:40000
KS ci ratio: 1.158460e-02	ci left: 7.367775e-01	ci right 7.453875e-01	k: 29644	n:40000
WDR27   40000 perm   8 sec   (4930 perm/sec)   p_kst 7.411000e-01   p_cons 1.650000e-03   p_joint 1.505000e-02

Joint ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
Cons ci ratio: 4.325322e-01	ci left: 1.286716e-03	ci right 2.013116e-03	k: 81	n:50000
KS ci ratio: 1.037563e-02	ci left: 7.367142e-01	ci right 7.444179e-01	k: 37029	n:50000
WDR27   50000 perm   10 sec   (4791 perm/sec)   p_kst 7.405800e-01   p_cons 1.620000e-03   p_joint 1.254000e-02

Joint ci ratio: 2.051216e-01	ci left: 5.429353e-03	ci right 6.685813e-03	k: 362	n:60000
Cons ci ratio: 3.916699e-01	ci left: 1.341235e-03	ci right 2.008455e-03	k: 99	n:60000
KS ci ratio: 9.451001e-03	ci left: 7.378932e-01	ci right 7.449168e-01	k: 44485	n:60000
WDR27   60000 perm   13 sec   (4688 perm/sec)   p_kst 7.414167e-01   p_cons 1.650000e-03   p_joint 6.033333e-03

Joint ci ratio: 2.060687e-01	ci left: 4.612875e-03	ci right 5.685917e-03	k: 359	n:70000
Cons ci ratio: 3.652389e-01	ci left: 1.343553e-03	ci right 1.956091e-03	k: 114	n:70000
KS ci ratio: 8.721627e-03	ci left: 7.394014e-01	ci right 7.458927e-01	k: 51986	n:70000
WDR27   70000 perm   15 sec   (4591 perm/sec)   p_kst 7.426571e-01   p_cons 1.628571e-03   p_joint 5.128571e-03

Joint ci ratio: 2.115144e-01	ci left: 3.822859e-03	ci right 4.738665e-03	k: 341	n:80000
Cons ci ratio: 3.489441e-01	ci left: 1.300773e-03	ci right 1.861370e-03	k: 125	n:80000
KS ci ratio: 8.158491e-03	ci left: 7.396056e-01	ci right 7.456768e-01	k: 59412	n:80000
WDR27   80000 perm   18 sec   (4508 perm/sec)   p_kst 7.426500e-01   p_cons 1.562500e-03   p_joint 4.262500e-03

Joint ci ratio: 2.521697e-01	ci left: 2.340307e-03	ci right 3.025707e-03	k: 240	n:90000
Cons ci ratio: 3.371249e-01	ci left: 1.247624e-03	ci right 1.763142e-03	k: 134	n:90000
KS ci ratio: 7.688659e-03	ci left: 7.399422e-01	ci right 7.456644e-01	k: 66853	n:90000
WDR27   90000 perm   20 sec   (4431 perm/sec)   p_kst 7.428111e-01   p_cons 1.488889e-03   p_joint 2.666667e-03

Joint ci ratio: 1.775650e-01	ci left: 4.419267e-03	ci right 5.289835e-03	k: 484	n:100000
Cons ci ratio: 3.264298e-01	ci left: 1.205362e-03	ci right 1.684305e-03	k: 143	n:100000
KS ci ratio: 7.312834e-03	ci left: 7.391056e-01	ci right 7.445404e-01	k: 74183	n:100000
WDR27   100000 perm   23 sec   (4355 perm/sec)   p_kst 7.418300e-01   p_cons 1.430000e-03   p_joint 4.840000e-03

Joint ci ratio: 1.687463e-01	ci left: 4.469774e-03	ci right 5.302115e-03	k: 536	n:110000
Cons ci ratio: 3.146386e-01	ci left: 1.187739e-03	ci right 1.639206e-03	k: 154	n:110000
KS ci ratio: 6.980343e-03	ci left: 7.388015e-01	ci right 7.439857e-01	k: 81554	n:110000
WDR27   110000 perm   26 sec   (4278 perm/sec)   p_kst 7.414000e-01   p_cons 1.400000e-03   p_joint 4.872727e-03

Joint ci ratio: 1.527479e-01	ci left: 5.041270e-03	ci right 5.882901e-03	k: 654	n:120000
Cons ci ratio: 3.384459e-01	ci left: 9.280642e-04	ci right 1.313366e-03	k: 133	n:120000
KS ci ratio: 6.681137e-03	ci left: 7.390296e-01	ci right 7.439920e-01	k: 88982	n:120000
WDR27   120000 perm   28 sec   (4211 perm/sec)   p_kst 7.415167e-01   p_cons 1.108333e-03   p_joint 5.450000e-03

Joint ci ratio: 1.204838e-01	ci left: 7.590050e-03	ci right 8.570545e-03	k: 1049	n:130000
Cons ci ratio: 3.231321e-01	ci left: 9.483759e-04	ci right 1.320607e-03	k: 146	n:130000
KS ci ratio: 6.420984e-03	ci left: 7.390106e-01	ci right 7.437787e-01	k: 96382	n:130000
WDR27   130000 perm   31 sec   (4146 perm/sec)   p_kst 7.414000e-01   p_cons 1.123077e-03   p_joint 8.069231e-03

Joint ci ratio: 1.240810e-01	ci left: 6.639159e-03	ci right 7.524298e-03	k: 990	n:140000
Cons ci ratio: 3.097250e-01	ci left: 9.661224e-04	ci right 1.326480e-03	k: 159	n:140000
KS ci ratio: 6.195599e-03	ci left: 7.385892e-01	ci right 7.431865e-01	k: 103725	n:140000
WDR27   140000 perm   34 sec   (4079 perm/sec)   p_kst 7.408929e-01   p_cons 1.135714e-03   p_joint 7.071429e-03

Joint ci ratio: 1.242367e-01	ci left: 6.183539e-03	ci right 7.009041e-03	k: 988	n:150000
Cons ci ratio: 2.995980e-01	ci left: 9.694437e-04	ci right 1.316969e-03	k: 170	n:150000
KS ci ratio: 5.981665e-03	ci left: 7.389154e-01	ci right 7.433552e-01	k: 111171	n:150000
WDR27   150000 perm   37 sec   (4018 perm/sec)   p_kst 7.411400e-01   p_cons 1.133333e-03   p_joint 6.586667e-03

Joint ci ratio: 1.218081e-01	ci left: 6.039346e-03	ci right 6.828699e-03	k: 1028	n:160000
Cons ci ratio: 2.936520e-01	ci left: 9.493469e-04	ci right 1.281657e-03	k: 177	n:160000
KS ci ratio: 5.791666e-03	ci left: 7.389901e-01	ci right 7.432887e-01	k: 118583	n:160000
WDR27   160000 perm   40 sec   (3957 perm/sec)   p_kst 7.411437e-01   p_cons 1.106250e-03   p_joint 6.425000e-03

Joint ci ratio: 1.271623e-01	ci left: 5.205209e-03	ci right 5.917695e-03	k: 944	n:170000
Cons ci ratio: 2.849787e-01	ci left: 9.535149e-04	ci right 1.275652e-03	k: 188	n:170000
KS ci ratio: 5.619210e-03	ci left: 7.390225e-01	ci right 7.431928e-01	k: 125989	n:170000
WDR27   170000 perm   44 sec   (3897 perm/sec)   p_kst 7.411118e-01   p_cons 1.105882e-03   p_joint 5.552941e-03

Joint ci ratio: 1.251352e-01	ci left: 5.082797e-03	ci right 5.766613e-03	k: 975	n:180000
Cons ci ratio: 2.736280e-01	ci left: 9.832098e-04	ci right 1.299876e-03	k: 204	n:180000
KS ci ratio: 5.464537e-03	ci left: 7.388247e-01	ci right 7.428786e-01	k: 133354	n:180000
WDR27   180000 perm   47 sec   (3837 perm/sec)   p_kst 7.408556e-01   p_cons 1.133333e-03   p_joint 5.416667e-03

Joint ci ratio: 1.139062e-01	ci left: 5.841738e-03	ci right 6.552402e-03	k: 1176	n:190000
Cons ci ratio: 2.684427e-01	ci left: 9.707054e-04	ci right 1.276423e-03	k: 212	n:190000
KS ci ratio: 5.318758e-03	ci left: 7.388814e-01	ci right 7.428270e-01	k: 140763	n:190000
WDR27   190000 perm   50 sec   (3782 perm/sec)   p_kst 7.408579e-01   p_cons 1.115789e-03   p_joint 6.189474e-03

Joint ci ratio: 1.119323e-01	ci left: 5.753705e-03	ci right 6.440729e-03	k: 1218	n:200000
Cons ci ratio: 2.594597e-01	ci left: 9.922105e-04	ci right 1.292549e-03	k: 227	n:200000
KS ci ratio: 5.180681e-03	ci left: 7.391843e-01	ci right 7.430287e-01	k: 148222	n:200000
WDR27   200000 perm   54 sec   (3727 perm/sec)   p_kst 7.411100e-01   p_cons 1.135000e-03   p_joint 6.090000e-03

Joint ci ratio: 1.101894e-01	ci left: 5.660259e-03	ci right 6.324917e-03	k: 1257	n:210000
Cons ci ratio: 2.539512e-01	ci left: 9.895177e-04	ci right 1.281676e-03	k: 237	n:210000
KS ci ratio: 5.053889e-03	ci left: 7.393784e-01	ci right 7.431293e-01	k: 155664	n:210000
WDR27   210000 perm   57 sec   (3676 perm/sec)   p_kst 7.412571e-01   p_cons 1.128571e-03   p_joint 5.985714e-03

Joint ci ratio: 1.076521e-01	ci left: 5.668273e-03	ci right 6.317574e-03	k: 1317	n:220000
Cons ci ratio: 2.513286e-01	ci left: 9.658264e-04	ci right 1.247584e-03	k: 242	n:220000
KS ci ratio: 4.935268e-03	ci left: 7.396104e-01	ci right 7.432741e-01	k: 163118	n:220000
WDR27   220000 perm   61 sec   (3624 perm/sec)   p_kst 7.414455e-01   p_cons 1.100000e-03   p_joint 5.986364e-03

Joint ci ratio: 9.645157e-02	ci left: 6.786375e-03	ci right 7.478308e-03	k: 1639	n:230000
Cons ci ratio: 2.468009e-01	ci left: 9.605219e-04	ci right 1.234909e-03	k: 251	n:230000
KS ci ratio: 4.826922e-03	ci left: 7.396402e-01	ci right 7.432233e-01	k: 170530	n:230000
WDR27   230000 perm   64 sec   (3576 perm/sec)   p_kst 7.414348e-01   p_cons 1.091304e-03   p_joint 7.126087e-03

Joint ci ratio: 9.620059e-02	ci left: 6.540166e-03	ci right 7.205161e-03	k: 1648	n:240000
Cons ci ratio: 2.402169e-01	ci left: 9.752757e-04	ci right 1.245339e-03	k: 265	n:240000
KS ci ratio: 4.722896e-03	ci left: 7.398729e-01	ci right 7.433796e-01	k: 177991	n:240000
WDR27   240000 perm   68 sec   (3525 perm/sec)   p_kst 7.416292e-01   p_cons 1.104167e-03   p_joint 6.866667e-03

Joint ci ratio: 9.065215e-02	ci left: 7.087315e-03	ci right 7.764180e-03	k: 1855	n:250000
Cons ci ratio: 2.341331e-01	ci left: 9.889383e-04	ci right 1.254845e-03	k: 279	n:250000
KS ci ratio: 4.628454e-03	ci left: 7.398271e-01	ci right 7.432633e-01	k: 185387	n:250000
WDR27   250000 perm   72 sec   (3479 perm/sec)   p_kst 7.415480e-01   p_cons 1.116000e-03   p_joint 7.420000e-03

Joint ci ratio: 9.116121e-02	ci left: 6.739497e-03	ci right 7.386949e-03	k: 1835	n:260000
Cons ci ratio: 2.300615e-01	ci left: 9.871274e-04	ci right 1.247276e-03	k: 289	n:260000
KS ci ratio: 4.538913e-03	ci left: 7.398318e-01	ci right 7.432013e-01	k: 192795	n:260000
WDR27   260000 perm   76 sec   (3434 perm/sec)   p_kst 7.415192e-01   p_cons 1.111538e-03   p_joint 7.057692e-03

Joint ci ratio: 9.084994e-02	ci left: 6.536907e-03	ci right 7.162638e-03	k: 1848	n:270000
Cons ci ratio: 2.239640e-01	ci left: 1.006458e-03	ci right 1.263702e-03	k: 305	n:270000
KS ci ratio: 4.453946e-03	ci left: 7.398739e-01	ci right 7.431802e-01	k: 200213	n:270000
WDR27   270000 perm   80 sec   (3387 perm/sec)   p_kst 7.415296e-01   p_cons 1.129630e-03   p_joint 6.844444e-03

Joint ci ratio: 7.822291e-02	ci left: 8.541421e-03	ci right 9.240229e-03	k: 2488	n:280000
Cons ci ratio: 2.190090e-01	ci left: 1.017740e-03	ci right 1.271338e-03	k: 319	n:280000
KS ci ratio: 4.375045e-03	ci left: 7.397846e-01	ci right 7.430318e-01	k: 207595	n:280000
WDR27   280000 perm   84 sec   (3344 perm/sec)   p_kst 7.414107e-01   p_cons 1.139286e-03   p_joint 8.885714e-03

Joint ci ratio: 7.282175e-02	ci left: 9.532687e-03	ci right 1.025647e-02	k: 2868	n:290000
Cons ci ratio: 2.156657e-01	ci left: 1.015252e-03	ci right 1.263856e-03	k: 329	n:290000
KS ci ratio: 4.299072e-03	ci left: 7.398022e-01	ci right 7.429929e-01	k: 215006	n:290000
WDR27   290000 perm   88 sec   (3302 perm/sec)   p_kst 7.414000e-01   p_cons 1.134483e-03   p_joint 9.889655e-03

Joint ci ratio: 7.058311e-02	ci left: 9.817318e-03	ci right 1.053886e-02	k: 3052	n:300000
Cons ci ratio: 2.109240e-01	ci left: 1.028740e-03	ci right 1.274393e-03	k: 344	n:300000
KS ci ratio: 4.226556e-03	ci left: 7.398525e-01	ci right 7.429895e-01	k: 222427	n:300000
WDR27   300000 perm   92 sec   (3262 perm/sec)   p_kst 7.414233e-01   p_cons 1.146667e-03   p_joint 1.017333e-02

Joint ci ratio: 6.974610e-02	ci left: 9.735137e-03	ci right 1.044181e-02	k: 3126	n:310000
Cons ci ratio: 2.070584e-01	ci left: 1.035296e-03	ci right 1.277410e-03	k: 357	n:310000
KS ci ratio: 4.160704e-03	ci left: 7.396124e-01	ci right 7.426993e-01	k: 229759	n:310000
WDR27   310000 perm   96 sec   (3221 perm/sec)   p_kst 7.411581e-01   p_cons 1.151613e-03   p_joint 1.008387e-02

Joint ci ratio: 7.125668e-02	ci left: 9.034779e-03	ci right 9.705401e-03	k: 2997	n:320000
Cons ci ratio: 2.053466e-01	ci left: 1.020724e-03	ci right 1.257209e-03	k: 363	n:320000
KS ci ratio: 4.095263e-03	ci left: 7.396287e-01	ci right 7.426669e-01	k: 237168	n:320000
WDR27   320000 perm   101 sec   (3183 perm/sec)   p_kst 7.411500e-01   p_cons 1.134375e-03   p_joint 9.365625e-03

Joint ci ratio: 6.597439e-02	ci left: 1.023550e-02	ci right 1.093677e-02	k: 3492	n:330000
Cons ci ratio: 2.012409e-01	ci left: 1.032935e-03	ci right 1.266876e-03	k: 378	n:330000
KS ci ratio: 4.031255e-03	ci left: 7.397931e-01	ci right 7.427844e-01	k: 244626	n:330000
WDR27   330000 perm   105 sec   (3149 perm/sec)   p_kst 7.412909e-01   p_cons 1.145455e-03   p_joint 1.058182e-02

Joint ci ratio: 6.818863e-02	ci left: 9.298091e-03	ci right 9.957366e-03	k: 3272	n:340000
Cons ci ratio: 1.983827e-01	ci left: 1.033289e-03	ci right 1.263585e-03	k: 389	n:340000
KS ci ratio: 3.971192e-03	ci left: 7.398481e-01	ci right 7.427949e-01	k: 252050	n:340000
WDR27   340000 perm   109 sec   (3111 perm/sec)   p_kst 7.413235e-01   p_cons 1.144118e-03   p_joint 9.623529e-03

Joint ci ratio: 6.859053e-02	ci left: 8.928466e-03	ci right 9.565413e-03	k: 3235	n:350000
Cons ci ratio: 1.958877e-01	ci left: 1.030927e-03	ci right 1.257462e-03	k: 399	n:350000
KS ci ratio: 3.912015e-03	ci left: 7.400690e-01	ci right 7.429727e-01	k: 259533	n:350000
WDR27   350000 perm   114 sec   (3076 perm/sec)   p_kst 7.415229e-01   p_cons 1.140000e-03   p_joint 9.242857e-03

Joint ci ratio: 6.839710e-02	ci left: 8.732297e-03	ci right 9.353422e-03	k: 3254	n:360000
Cons ci ratio: 1.934845e-01	ci left: 1.028714e-03	ci right 1.251663e-03	k: 409	n:360000
KS ci ratio: 3.858815e-03	ci left: 7.399385e-01	ci right 7.428020e-01	k: 266894	n:360000
WDR27   360000 perm   118 sec   (3040 perm/sec)   p_kst 7.413722e-01   p_cons 1.136111e-03   p_joint 9.038889e-03

Joint ci ratio: 6.575646e-02	ci left: 9.200567e-03	ci right 9.828772e-03	k: 3519	n:370000
Cons ci ratio: 1.902627e-01	ci left: 1.036932e-03	ci right 1.257487e-03	k: 423	n:370000
KS ci ratio: 3.807404e-03	ci left: 7.398478e-01	ci right 7.426727e-01	k: 274267	n:370000
WDR27   370000 perm   123 sec   (3005 perm/sec)   p_kst 7.412622e-01   p_cons 1.143243e-03   p_joint 9.510811e-03

Joint ci ratio: 6.082891e-02	ci left: 1.048156e-02	ci right 1.114172e-02	k: 4107	n:380000
Cons ci ratio: 1.869830e-01	ci left: 1.047254e-03	ci right 1.265730e-03	k: 438	n:380000
KS ci ratio: 3.755185e-03	ci left: 7.400495e-01	ci right 7.428363e-01	k: 281749	n:380000
WDR27   380000 perm   128 sec   (2969 perm/sec)   p_kst 7.414447e-01   p_cons 1.152632e-03   p_joint 1.080789e-02

Joint ci ratio: 6.315440e-02	ci left: 9.473007e-03	ci right 1.009328e-02	k: 3814	n:390000
Cons ci ratio: 1.848895e-01	ci left: 1.044849e-03	ci right 1.260109e-03	k: 448	n:390000
KS ci ratio: 3.708896e-03	ci left: 7.398429e-01	ci right 7.425945e-01	k: 289076	n:390000
WDR27   390000 perm   133 sec   (2935 perm/sec)   p_kst 7.412205e-01   p_cons 1.148718e-03   p_joint 9.779487e-03

Joint ci ratio: 5.728776e-02	ci left: 1.123842e-02	ci right 1.190368e-02	k: 4627	n:400000
Cons ci ratio: 1.828647e-01	ci left: 1.042577e-03	ci right 1.254756e-03	k: 458	n:400000
KS ci ratio: 3.660934e-03	ci left: 7.399975e-01	ci right 7.427140e-01	k: 296543	n:400000
WDR27   400000 perm   138 sec   (2901 perm/sec)   p_kst 7.413575e-01   p_cons 1.145000e-03   p_joint 1.156750e-02

Joint ci ratio: 5.278921e-02	ci left: 1.292028e-02	ci right 1.362321e-02	k: 5440	n:410000
Cons ci ratio: 1.799472e-01	ci left: 1.052073e-03	ci right 1.262396e-03	k: 473	n:410000
KS ci ratio: 3.618280e-03	ci left: 7.397734e-01	ci right 7.424573e-01	k: 303858	n:410000
WDR27   410000 perm   143 sec   (2869 perm/sec)   p_kst 7.411171e-01   p_cons 1.153659e-03   p_joint 1.326829e-02

Joint ci ratio: 5.336189e-02	ci left: 1.234708e-02	ci right 1.302634e-02	k: 5327	n:420000
Cons ci ratio: 1.543510e-01	ci left: 1.414971e-03	ci right 1.653895e-03	k: 643	n:420000
KS ci ratio: 3.574750e-03	ci left: 7.398106e-01	ci right 7.424623e-01	k: 311278	n:420000
WDR27   420000 perm   150 sec   (2809 perm/sec)   p_kst 7.411381e-01   p_cons 1.530952e-03   p_joint 1.268333e-02

Joint ci ratio: 5.480418e-02	ci left: 1.143578e-02	ci right 1.208245e-02	k: 5055	n:430000
Cons ci ratio: 1.528167e-01	ci left: 1.411135e-03	ci right 1.646826e-03	k: 656	n:430000
KS ci ratio: 3.532883e-03	ci left: 7.398322e-01	ci right 7.424529e-01	k: 318692	n:430000
WDR27   430000 perm   155 sec   (2779 perm/sec)   p_kst 7.411442e-01   p_cons 1.525581e-03   p_joint 1.175581e-02

Joint ci ratio: 5.031173e-02	ci left: 1.326657e-02	ci right 1.395349e-02	k: 5987	n:440000
Cons ci ratio: 1.512143e-01	ci left: 1.409672e-03	ci right 1.642426e-03	k: 670	n:440000
KS ci ratio: 3.491832e-03	ci left: 7.399214e-01	ci right 7.425118e-01	k: 326136	n:440000
WDR27   440000 perm   160 sec   (2751 perm/sec)   p_kst 7.412182e-01   p_cons 1.522727e-03   p_joint 1.360682e-02

Joint ci ratio: 4.933507e-02	ci left: 1.349410e-02	ci right 1.417885e-02	k: 6225	n:450000
Cons ci ratio: 1.491172e-01	ci left: 1.418982e-03	ci right 1.649734e-03	k: 689	n:450000
KS ci ratio: 3.452340e-03	ci left: 7.399889e-01	ci right 7.425502e-01	k: 333572	n:450000
WDR27   450000 perm   165 sec   (2721 perm/sec)   p_kst 7.412711e-01   p_cons 1.531111e-03   p_joint 1.383333e-02

Joint ci ratio: 4.705100e-02	ci left: 1.451533e-02	ci right 1.521688e-02	k: 6837	n:460000
Cons ci ratio: 1.471050e-01	ci left: 1.427909e-03	ci right 1.656704e-03	k: 708	n:460000
KS ci ratio: 3.416131e-03	ci left: 7.398316e-01	ci right 7.423654e-01	k: 340906	n:460000
WDR27   460000 perm   172 sec   (2677 perm/sec)   p_kst 7.411000e-01   p_cons 1.539130e-03   p_joint 1.486304e-02

Joint ci ratio: 4.951122e-02	ci left: 1.283572e-02	ci right 1.348945e-02	k: 6185	n:470000
Cons ci ratio: 1.456740e-01	ci left: 1.426224e-03	ci right 1.652333e-03	k: 722	n:470000
KS ci ratio: 3.380475e-03	ci left: 7.397450e-01	ci right 7.422520e-01	k: 348270	n:470000
WDR27   470000 perm   178 sec   (2646 perm/sec)   p_kst 7.410000e-01   p_cons 1.536170e-03   p_joint 1.315957e-02

Joint ci ratio: 4.898341e-02	ci left: 1.284404e-02	ci right 1.349102e-02	k: 6319	n:480000
Cons ci ratio: 1.442840e-01	ci left: 1.424620e-03	ci right 1.648133e-03	k: 736	n:480000
KS ci ratio: 3.345675e-03	ci left: 7.396893e-01	ci right 7.421703e-01	k: 355647	n:480000
WDR27   480000 perm   184 sec   (2615 perm/sec)   p_kst 7.409313e-01   p_cons 1.533333e-03   p_joint 1.316458e-02

Joint ci ratio: 4.869432e-02	ci left: 1.273511e-02	ci right 1.337271e-02	k: 6395	n:490000
Cons ci ratio: 1.432198e-01	ci left: 1.417187e-03	ci right 1.637754e-03	k: 747	n:490000
KS ci ratio: 3.310591e-03	ci left: 7.397914e-01	ci right 7.422466e-01	k: 363100	n:490000
WDR27   490000 perm   189 sec   (2592 perm/sec)   p_kst 7.410204e-01   p_cons 1.524490e-03   p_joint 1.305102e-02

Joint ci ratio: 4.913842e-02	ci left: 1.225907e-02	ci right 1.287860e-02	k: 6283	n:500000
Cons ci ratio: 1.413420e-01	ci left: 1.427420e-03	ci right 1.646421e-03	k: 767	n:500000
KS ci ratio: 3.277167e-03	ci left: 7.398214e-01	ci right 7.422518e-01	k: 370519	n:500000
WDR27   500000 perm   195 sec   (2570 perm/sec)   p_kst 7.410380e-01   p_cons 1.534000e-03   p_joint 1.256600e-02

Joint ci ratio: 4.862233e-02	ci left: 1.227823e-02	ci right 1.289203e-02	k: 6417	n:510000
Cons ci ratio: 1.393591e-01	ci left: 1.441054e-03	ci right 1.658789e-03	k: 789	n:510000
KS ci ratio: 3.244421e-03	ci left: 7.398876e-01	ci right 7.422940e-01	k: 377957	n:510000
WDR27   510000 perm   200 sec   (2544 perm/sec)   p_kst 7.410922e-01   p_cons 1.547059e-03   p_joint 1.258235e-02

Joint ci ratio: 4.811846e-02	ci left: 1.229859e-02	ci right 1.290686e-02	k: 6552	n:520000
Cons ci ratio: 1.381407e-01	ci left: 1.439330e-03	ci right 1.654746e-03	k: 803	n:520000
KS ci ratio: 3.212944e-03	ci left: 7.399148e-01	ci right 7.422979e-01	k: 385376	n:520000
WDR27   520000 perm   206 sec   (2521 perm/sec)   p_kst 7.411077e-01   p_cons 1.544231e-03   p_joint 1.260000e-02

Joint ci ratio: 4.494281e-02	ci left: 1.383281e-02	ci right 1.447063e-02	k: 7499	n:530000
Cons ci ratio: 1.367863e-01	ci left: 1.441324e-03	ci right 1.654751e-03	k: 819	n:530000
KS ci ratio: 3.182724e-03	ci left: 7.398977e-01	ci right 7.422582e-01	k: 392772	n:530000
WDR27   530000 perm   212 sec   (2500 perm/sec)   p_kst 7.410792e-01   p_cons 1.545283e-03   p_joint 1.414906e-02

Joint ci ratio: 4.670737e-02	ci left: 1.257509e-02	ci right 1.317830e-02	k: 6952	n:540000
Cons ci ratio: 1.350670e-01	ci left: 1.452199e-03	ci right 1.664317e-03	k: 840	n:540000
KS ci ratio: 3.153433e-03	ci left: 7.398701e-01	ci right 7.422088e-01	k: 400162	n:540000
WDR27   540000 perm   218 sec   (2477 perm/sec)   p_kst 7.410407e-01   p_cons 1.555556e-03   p_joint 1.287407e-02

Joint ci ratio: 4.658415e-02	ci left: 1.241471e-02	ci right 1.300862e-02	k: 6990	n:550000
Cons ci ratio: 1.338002e-01	ci left: 1.453908e-03	ci right 1.664125e-03	k: 856	n:550000
KS ci ratio: 3.123737e-03	ci left: 7.399912e-01	ci right 7.423081e-01	k: 407633	n:550000
WDR27   550000 perm   224 sec   (2455 perm/sec)   p_kst 7.411509e-01   p_cons 1.556364e-03   p_joint 1.270909e-02

Joint ci ratio: 4.565617e-02	ci left: 1.269612e-02	ci right 1.329107e-02	k: 7275	n:560000
Cons ci ratio: 1.321897e-01	ci left: 1.464199e-03	ci right 1.673155e-03	k: 877	n:560000
KS ci ratio: 3.095513e-03	ci left: 7.400275e-01	ci right 7.423236e-01	k: 415059	n:560000
WDR27   560000 perm   230 sec   (2433 perm/sec)   p_kst 7.411768e-01   p_cons 1.566071e-03   p_joint 1.299107e-02

Joint ci ratio: 4.289178e-02	ci left: 1.413224e-02	ci right 1.475341e-02	k: 8231	n:570000
Cons ci ratio: 1.311485e-01	ci left: 1.462263e-03	ci right 1.669172e-03	k: 891	n:570000
KS ci ratio: 3.068222e-03	ci left: 7.400398e-01	ci right 7.423156e-01	k: 422472	n:570000
WDR27   570000 perm   236 sec   (2412 perm/sec)   p_kst 7.411789e-01   p_cons 1.563158e-03   p_joint 1.444035e-02

Joint ci ratio: 4.308607e-02	ci left: 1.376743e-02	ci right 1.437537e-02	k: 8160	n:580000
Cons ci ratio: 1.298446e-01	ci left: 1.467073e-03	ci right 1.672440e-03	k: 909	n:580000
KS ci ratio: 3.041448e-03	ci left: 7.400760e-01	ci right 7.423320e-01	k: 429899	n:580000
WDR27   580000 perm   243 sec   (2390 perm/sec)   p_kst 7.412052e-01   p_cons 1.567241e-03   p_joint 1.406897e-02

Joint ci ratio: 4.274996e-02	ci left: 1.375038e-02	ci right 1.435271e-02	k: 8289	n:590000
Cons ci ratio: 1.285790e-01	ci left: 1.471730e-03	ci right 1.675587e-03	k: 927	n:590000
KS ci ratio: 3.015151e-03	ci left: 7.401381e-01	ci right 7.423748e-01	k: 437342	n:590000
WDR27   590000 perm   249 sec   (2369 perm/sec)   p_kst 7.412576e-01   p_cons 1.571186e-03   p_joint 1.404915e-02

Joint ci ratio: 4.240627e-02	ci left: 1.374381e-02	ci right 1.434090e-02	k: 8424	n:600000
Cons ci ratio: 1.276201e-01	ci left: 1.469787e-03	ci right 1.671741e-03	k: 941	n:600000
KS ci ratio: 2.989667e-03	ci left: 7.401799e-01	ci right 7.423978e-01	k: 444774	n:600000
WDR27   600000 perm   256 sec   (2348 perm/sec)   p_kst 7.412900e-01   p_cons 1.568333e-03   p_joint 1.404000e-02

Joint ci ratio: 4.267392e-02	ci left: 1.335301e-02	ci right 1.393687e-02	k: 8322	n:610000
Cons ci ratio: 1.267488e-01	ci left: 1.466325e-03	ci right 1.666325e-03	k: 954	n:610000
KS ci ratio: 2.965274e-03	ci left: 7.401613e-01	ci right 7.423610e-01	k: 452170	n:610000
WDR27   610000 perm   262 sec   (2327 perm/sec)   p_kst 7.412623e-01   p_cons 1.563934e-03   p_joint 1.364262e-02

Joint ci ratio: 4.262162e-02	ci left: 1.317272e-02	ci right 1.374797e-02	k: 8344	n:620000
Cons ci ratio: 1.257650e-01	ci left: 1.466104e-03	ci right 1.664406e-03	k: 969	n:620000
KS ci ratio: 2.941593e-03	ci left: 7.401273e-01	ci right 7.423092e-01	k: 459556	n:620000
WDR27   620000 perm   269 sec   (2306 perm/sec)   p_kst 7.412194e-01   p_cons 1.562903e-03   p_joint 1.345806e-02

Joint ci ratio: 4.406101e-02	ci left: 1.213447e-02	ci right 1.268273e-02	k: 7816	n:630000
Cons ci ratio: 1.249946e-01	ci left: 1.461283e-03	ci right 1.657632e-03	k: 981	n:630000
KS ci ratio: 2.918349e-03	ci left: 7.401102e-01	ci right 7.422748e-01	k: 466952	n:630000
WDR27   630000 perm   276 sec   (2287 perm/sec)   p_kst 7.411937e-01   p_cons 1.557143e-03   p_joint 1.240635e-02

Joint ci ratio: 4.488934e-02	ci left: 1.151060e-02	ci right 1.204070e-02	k: 7535	n:640000
Cons ci ratio: 1.241132e-01	ci left: 1.459644e-03	ci right 1.654288e-03	k: 995	n:640000
KS ci ratio: 2.895978e-03	ci left: 7.400500e-01	ci right 7.421978e-01	k: 474320	n:640000
WDR27   640000 perm   282 sec   (2266 perm/sec)   p_kst 7.411250e-01   p_cons 1.554688e-03   p_joint 1.177344e-02

Joint ci ratio: 4.814645e-02	ci left: 9.852256e-03	ci right 1.033982e-02	k: 6561	n:650000
Cons ci ratio: 1.234953e-01	ci left: 1.452095e-03	ci right 1.644699e-03	k: 1005	n:650000
KS ci ratio: 2.873502e-03	ci left: 7.400733e-01	ci right 7.422045e-01	k: 481741	n:650000
WDR27   650000 perm   289 sec   (2247 perm/sec)   p_kst 7.411400e-01   p_cons 1.546154e-03   p_joint 1.009385e-02

Joint ci ratio: 4.775120e-02	ci left: 9.866153e-03	ci right 1.035028e-02	k: 6670	n:660000
Cons ci ratio: 1.225247e-01	ci left: 1.453590e-03	ci right 1.644767e-03	k: 1021	n:660000
KS ci ratio: 2.851159e-03	ci left: 7.401476e-01	ci right 7.422624e-01	k: 489196	n:660000
WDR27   660000 perm   296 sec   (2228 perm/sec)   p_kst 7.412061e-01   p_cons 1.546970e-03   p_joint 1.010606e-02

Joint ci ratio: 4.466810e-02	ci left: 1.111027e-02	ci right 1.161934e-02	k: 7613	n:670000
Cons ci ratio: 1.215767e-01	ci left: 1.455047e-03	ci right 1.644827e-03	k: 1037	n:670000
KS ci ratio: 2.830463e-03	ci left: 7.400658e-01	ci right 7.421650e-01	k: 496548	n:670000
WDR27   670000 perm   303 sec   (2210 perm/sec)   p_kst 7.411164e-01   p_cons 1.547761e-03   p_joint 1.136269e-02

Joint ci ratio: 4.451545e-02	ci left: 1.102394e-02	ci right 1.152729e-02	k: 7666	n:680000
Cons ci ratio: 1.208227e-01	ci left: 1.452187e-03	ci right 1.640336e-03	k: 1050	n:680000
KS ci ratio: 2.809361e-03	ci left: 7.401028e-01	ci right 7.421863e-01	k: 503979	n:680000
WDR27   680000 perm   310 sec   (2191 perm/sec)   p_kst 7.411456e-01   p_cons 1.544118e-03   p_joint 1.127353e-02

Joint ci ratio: 4.509360e-02	ci left: 1.058898e-02	ci right 1.107891e-02	k: 7474	n:690000
Cons ci ratio: 1.203661e-01	ci left: 1.442385e-03	ci right 1.628507e-03	k: 1058	n:690000
KS ci ratio: 2.788554e-03	ci left: 7.401620e-01	ci right 7.422302e-01	k: 511426	n:690000
WDR27   690000 perm   317 sec   (2174 perm/sec)   p_kst 7.411971e-01   p_cons 1.533333e-03   p_joint 1.083188e-02

Joint ci ratio: 4.587579e-02	ci left: 1.008598e-02	ci right 1.056094e-02	k: 7225	n:700000
Cons ci ratio: 1.196343e-01	ci left: 1.439793e-03	ci right 1.624372e-03	k: 1071	n:700000
KS ci ratio: 2.769152e-03	ci left: 7.400879e-01	ci right 7.421415e-01	k: 518781	n:700000
WDR27   700000 perm   325 sec   (2157 perm/sec)   p_kst 7.411157e-01   p_cons 1.530000e-03   p_joint 1.032143e-02

Joint ci ratio: 4.577687e-02	ci left: 9.988465e-03	ci right 1.045780e-02	k: 7257	n:710000
Cons ci ratio: 1.184247e-01	ci left: 1.449578e-03	ci right 1.633401e-03	k: 1093	n:710000
KS ci ratio: 2.749411e-03	ci left: 7.401189e-01	ci right 7.421580e-01	k: 526209	n:710000
WDR27   710000 perm   332 sec   (2139 perm/sec)   p_kst 7.411394e-01   p_cons 1.539437e-03   p_joint 1.022113e-02

Joint ci ratio: 4.705760e-02	ci left: 9.321143e-03	ci right 9.771705e-03	k: 6872	n:720000
Cons ci ratio: 1.181020e-01	ci left: 1.437531e-03	ci right 1.619295e-03	k: 1099	n:720000
KS ci ratio: 2.730166e-03	ci left: 7.401380e-01	ci right 7.421628e-01	k: 533629	n:720000
WDR27   720000 perm   339 sec   (2122 perm/sec)   p_kst 7.411514e-01   p_cons 1.526389e-03   p_joint 9.544444e-03

Joint ci ratio: 4.755919e-02	ci left: 9.001201e-03	ci right 9.441063e-03	k: 6730	n:730000
Cons ci ratio: 1.174633e-01	ci left: 1.433793e-03	ci right 1.614035e-03	k: 1111	n:730000
KS ci ratio: 2.711494e-03	ci left: 7.401319e-01	ci right 7.421429e-01	k: 541031	n:730000
WDR27   730000 perm   347 sec   (2106 perm/sec)   p_kst 7.411384e-01   p_cons 1.521918e-03   p_joint 9.219178e-03

Joint ci ratio: 4.729347e-02	ci left: 8.981046e-03	ci right 9.417404e-03	k: 6806	n:740000
Cons ci ratio: 1.168349e-01	ci left: 1.430158e-03	ci right 1.608916e-03	k: 1123	n:740000
KS ci ratio: 2.693380e-03	ci left: 7.401004e-01	ci right 7.420977e-01	k: 548414	n:740000
WDR27   740000 perm   354 sec   (2090 perm/sec)   p_kst 7.411000e-01   p_cons 1.517568e-03   p_joint 9.197297e-03

Joint ci ratio: 4.696334e-02	ci left: 8.987791e-03	ci right 9.421346e-03	k: 6902	n:750000
Cons ci ratio: 1.158595e-01	ci left: 1.435686e-03	ci right 1.613533e-03	k: 1142	n:750000
KS ci ratio: 2.674955e-03	ci left: 7.401658e-01	ci right 7.421497e-01	k: 555869	n:750000
WDR27   750000 perm   362 sec   (2073 perm/sec)   p_kst 7.411587e-01   p_cons 1.522667e-03   p_joint 9.202667e-03

Joint ci ratio: 4.662658e-02	ci left: 8.999571e-03	ci right 9.430498e-03	k: 7002	n:760000
Cons ci ratio: 1.151066e-01	ci left: 1.435962e-03	ci right 1.612609e-03	k: 1157	n:760000
KS ci ratio: 2.656566e-03	ci left: 7.402783e-01	ci right 7.422488e-01	k: 563361	n:760000
WDR27   760000 perm   369 sec   (2057 perm/sec)   p_kst 7.412645e-01   p_cons 1.522368e-03   p_joint 9.213158e-03

Joint ci ratio: 4.460391e-02	ci left: 9.709600e-03	ci right 1.015384e-02	k: 7646	n:770000
Cons ci ratio: 1.142708e-01	ci left: 1.438758e-03	ci right 1.614377e-03	k: 1174	n:770000
KS ci ratio: 2.639023e-03	ci left: 7.403190e-01	ci right 7.422766e-01	k: 570800	n:770000
WDR27   770000 perm   377 sec   (2042 perm/sec)   p_kst 7.412987e-01   p_cons 1.524675e-03   p_joint 9.929870e-03

Joint ci ratio: 4.436717e-02	ci left: 9.689074e-03	ci right 1.012996e-02	k: 7728	n:780000
Cons ci ratio: 1.137880e-01	ci left: 1.432767e-03	ci right 1.606866e-03	k: 1184	n:780000
KS ci ratio: 2.621535e-03	ci left: 7.404011e-01	ci right 7.423459e-01	k: 578272	n:780000
WDR27   780000 perm   385 sec   (2027 perm/sec)   p_kst 7.413744e-01   p_cons 1.517949e-03   p_joint 9.907692e-03

Joint ci ratio: 4.560776e-02	ci left: 9.053209e-03	ci right 9.476983e-03	k: 7318	n:790000
Cons ci ratio: 1.128394e-01	ci left: 1.439230e-03	ci right 1.612560e-03	k: 1204	n:790000
KS ci ratio: 2.604853e-03	ci left: 7.404127e-01	ci right 7.423451e-01	k: 585690	n:790000
WDR27   790000 perm   393 sec   (2010 perm/sec)   p_kst 7.413797e-01   p_cons 1.524051e-03   p_joint 9.263291e-03

Joint ci ratio: 4.526221e-02	ci left: 9.078456e-03	ci right 9.500108e-03	k: 7430	n:800000
Cons ci ratio: 1.117772e-01	ci left: 1.449182e-03	ci right 1.621959e-03	k: 1227	n:800000
KS ci ratio: 2.588756e-03	ci left: 7.403839e-01	ci right 7.423043e-01	k: 593076	n:800000
WDR27   800000 perm   401 sec   (1996 perm/sec)   p_kst 7.413450e-01   p_cons 1.533750e-03   p_joint 9.287500e-03

Joint ci ratio: 4.460318e-02	ci left: 9.234947e-03	ci right 9.657462e-03	k: 7650	n:810000
Cons ci ratio: 1.109221e-01	ci left: 1.454095e-03	ci right 1.626045e-03	k: 1246	n:810000
KS ci ratio: 2.572317e-03	ci left: 7.404511e-01	ci right 7.423595e-01	k: 600539	n:810000
WDR27   810000 perm   409 sec   (1981 perm/sec)   p_kst 7.414062e-01   p_cons 1.538272e-03   p_joint 9.444444e-03

Joint ci ratio: 4.431726e-02	ci left: 9.241715e-03	ci right 9.661761e-03	k: 7749	n:820000
Cons ci ratio: 1.100863e-01	ci left: 1.458892e-03	ci right 1.630026e-03	k: 1265	n:820000
KS ci ratio: 2.556438e-03	ci left: 7.404789e-01	ci right 7.423755e-01	k: 607971	n:820000
WDR27   820000 perm   417 sec   (1967 perm/sec)   p_kst 7.414280e-01   p_cons 1.542683e-03   p_joint 9.450000e-03

Joint ci ratio: 4.417047e-02	ci left: 9.192322e-03	ci right 9.608703e-03	k: 7801	n:830000
Cons ci ratio: 1.093545e-01	ci left: 1.461235e-03	ci right 1.631431e-03	k: 1282	n:830000
KS ci ratio: 2.541217e-03	ci left: 7.404505e-01	ci right 7.423357e-01	k: 615357	n:830000
WDR27   830000 perm   425 sec   (1953 perm/sec)   p_kst 7.413940e-01   p_cons 1.544578e-03   p_joint 9.398795e-03

Joint ci ratio: 4.542365e-02	ci left: 8.588428e-03	ci right 8.988780e-03	k: 7381	n:840000
Cons ci ratio: 1.088890e-01	ci left: 1.456577e-03	ci right 1.625461e-03	k: 1293	n:840000
KS ci ratio: 2.526382e-03	ci left: 7.404050e-01	ci right 7.422791e-01	k: 622728	n:840000
WDR27   840000 perm   433 sec   (1939 perm/sec)   p_kst 7.413429e-01   p_cons 1.539286e-03   p_joint 8.786905e-03

Joint ci ratio: 4.139729e-02	ci left: 1.022267e-02	ci right 1.065597e-02	k: 8872	n:850000
Cons ci ratio: 1.084710e-01	ci left: 1.450886e-03	ci right 1.618423e-03	k: 1303	n:850000
KS ci ratio: 2.511642e-03	ci left: 7.403853e-01	ci right 7.422484e-01	k: 630120	n:850000
WDR27   850000 perm   442 sec   (1924 perm/sec)   p_kst 7.413176e-01   p_cons 1.532941e-03   p_joint 1.043765e-02

Joint ci ratio: 4.115680e-02	ci left: 1.022349e-02	ci right 1.065424e-02	k: 8976	n:860000
Cons ci ratio: 1.077298e-01	ci left: 1.454379e-03	ci right 1.621100e-03	k: 1321	n:860000
KS ci ratio: 2.497172e-03	ci left: 7.403638e-01	ci right 7.422160e-01	k: 637510	n:860000
WDR27   860000 perm   450 sec   (1911 perm/sec)   p_kst 7.412907e-01   p_cons 1.536047e-03   p_joint 1.043721e-02

Joint ci ratio: 4.296842e-02	ci left: 9.272207e-03	ci right 9.680494e-03	k: 8243	n:870000
Cons ci ratio: 1.075679e-01	ci left: 1.442136e-03	ci right 1.607189e-03	k: 1325	n:870000
KS ci ratio: 2.483091e-03	ci left: 7.403209e-01	ci right 7.421626e-01	k: 644881	n:870000
WDR27   870000 perm   459 sec   (1897 perm/sec)   p_kst 7.412425e-01   p_cons 1.522989e-03   p_joint 9.474713e-03

Joint ci ratio: 4.286590e-02	ci left: 9.211801e-03	ci right 9.616438e-03	k: 8283	n:880000
Cons ci ratio: 1.070446e-01	ci left: 1.440124e-03	ci right 1.604094e-03	k: 1338	n:880000
KS ci ratio: 2.469018e-03	ci left: 7.403143e-01	ci right 7.421455e-01	k: 652283	n:880000
WDR27   880000 perm   467 sec   (1883 perm/sec)   p_kst 7.412307e-01   p_cons 1.520455e-03   p_joint 9.412500e-03

Joint ci ratio: 3.940985e-02	ci left: 1.077766e-02	ci right 1.121205e-02	k: 9784	n:890000
Cons ci ratio: 1.064501e-01	ci left: 1.440347e-03	ci right 1.603375e-03	k: 1353	n:890000
KS ci ratio: 2.455470e-03	ci left: 7.402629e-01	ci right 7.420839e-01	k: 659645	n:890000
WDR27   890000 perm   476 sec   (1868 perm/sec)   p_kst 7.411742e-01   p_cons 1.520225e-03   p_joint 1.099326e-02

Joint ci ratio: 3.938787e-02	ci left: 1.067110e-02	ci right 1.110095e-02	k: 9796	n:900000
Cons ci ratio: 1.058653e-01	ci left: 1.440567e-03	ci right 1.602668e-03	k: 1368	n:900000
KS ci ratio: 2.442347e-03	ci left: 7.401804e-01	ci right 7.419914e-01	k: 666978	n:900000
WDR27   900000 perm   485 sec   (1856 perm/sec)   p_kst 7.410867e-01   p_cons 1.520000e-03   p_joint 1.088444e-02

Joint ci ratio: 3.930720e-02	ci left: 1.059844e-02	ci right 1.102446e-02	k: 9837	n:910000
Cons ci ratio: 1.053663e-01	ci left: 1.438645e-03	ci right 1.599720e-03	k: 1381	n:910000
KS ci ratio: 2.428848e-03	ci left: 7.401921e-01	ci right 7.419932e-01	k: 674395	n:910000
WDR27   910000 perm   494 sec   (1842 perm/sec)   p_kst 7.410934e-01   p_cons 1.517582e-03   p_joint 1.080989e-02

Joint ci ratio: 3.939665e-02	ci left: 1.043694e-02	ci right 1.085745e-02	k: 9794	n:920000
Cons ci ratio: 1.049497e-01	ci left: 1.434649e-03	ci right 1.594602e-03	k: 1392	n:920000
KS ci ratio: 2.415625e-03	ci left: 7.401949e-01	ci right 7.419862e-01	k: 681804	n:920000
WDR27   920000 perm   503 sec   (1830 perm/sec)   p_kst 7.410913e-01   p_cons 1.513043e-03   p_joint 1.064565e-02

Joint ci ratio: 3.963682e-02	ci left: 1.020119e-02	ci right 1.061477e-02	k: 9678	n:930000
Cons ci ratio: 1.041303e-01	ci left: 1.442261e-03	ci right 1.601730e-03	k: 1414	n:930000
KS ci ratio: 2.402912e-03	ci left: 7.401503e-01	ci right 7.419320e-01	k: 689169	n:930000
WDR27   930000 perm   512 sec   (1818 perm/sec)   p_kst 7.410419e-01   p_cons 1.520430e-03   p_joint 1.040645e-02

Joint ci ratio: 3.951752e-02	ci left: 1.015481e-02	ci right 1.056524e-02	k: 9737	n:940000
Cons ci ratio: 1.032219e-01	ci left: 1.452824e-03	ci right 1.611975e-03	k: 1439	n:940000
KS ci ratio: 2.389893e-03	ci left: 7.401877e-01	ci right 7.419598e-01	k: 696610	n:940000
WDR27   940000 perm   521 sec   (1804 perm/sec)   p_kst 7.410745e-01   p_cons 1.530851e-03   p_joint 1.035851e-02

Joint ci ratio: 3.930615e-02	ci left: 1.015735e-02	ci right 1.056564e-02	k: 9842	n:950000
Cons ci ratio: 1.027592e-01	ci left: 1.450863e-03	ci right 1.609043e-03	k: 1452	n:950000
KS ci ratio: 2.377261e-03	ci left: 7.401958e-01	ci right 7.419585e-01	k: 704024	n:950000
WDR27   950000 perm   530 sec   (1791 perm/sec)   p_kst 7.410779e-01   p_cons 1.528421e-03   p_joint 1.036000e-02

Joint ci ratio: 3.909416e-02	ci left: 1.016192e-02	ci right 1.056813e-02	k: 9949	n:960000
Cons ci ratio: 1.023726e-01	ci left: 1.446914e-03	ci right 1.604035e-03	k: 1463	n:960000
KS ci ratio: 2.364909e-03	ci left: 7.401902e-01	ci right 7.419438e-01	k: 711425	n:960000
WDR27   960000 perm   541 sec   (1773 perm/sec)   p_kst 7.410677e-01   p_cons 1.523958e-03   p_joint 1.036354e-02

Joint ci ratio: 3.937713e-02	ci left: 9.914215e-03	ci right 1.031346e-02	k: 9809	n:970000
Cons ci ratio: 1.018177e-01	ci left: 1.448071e-03	ci right 1.604414e-03	k: 1479	n:970000
KS ci ratio: 2.352256e-03	ci left: 7.402653e-01	ci right 7.420096e-01	k: 718904	n:970000
WDR27   970000 perm   551 sec   (1761 perm/sec)   p_kst 7.411381e-01   p_cons 1.524742e-03   p_joint 1.011237e-02

Joint ci ratio: 3.949729e-02	ci left: 9.754433e-03	ci right 1.014847e-02	k: 9751	n:980000
Cons ci ratio: 1.014417e-01	ci left: 1.444234e-03	ci right 1.599553e-03	k: 1490	n:980000
KS ci ratio: 2.339784e-03	ci left: 7.403419e-01	ci right 7.420771e-01	k: 726386	n:980000
WDR27   980000 perm   560 sec   (1749 perm/sec)   p_kst 7.412102e-01   p_cons 1.520408e-03   p_joint 9.950000e-03

Joint ci ratio: 3.692386e-02	ci left: 1.104868e-02	ci right 1.146530e-02	k: 11143	n:990000
Cons ci ratio: 1.008682e-01	ci left: 1.446383e-03	ci right 1.601001e-03	k: 1507	n:990000
KS ci ratio: 2.327717e-03	ci left: 7.403826e-01	ci right 7.421090e-01	k: 733834	n:990000
WDR27   990000 perm   570 sec   (1738 perm/sec)   p_kst 7.412465e-01   p_cons 1.522222e-03   p_joint 1.125556e-02

Joint ci ratio: 3.696288e-02	ci left: 1.091638e-02	ci right 1.132846e-02	k: 11121	n:1000000
Cons ci ratio: 1.004033e-01	ci left: 1.445567e-03	ci right 1.599344e-03	k: 1521	n:1000000
KS ci ratio: 2.315949e-03	ci left: 7.404035e-01	ci right 7.421211e-01	k: 741263	n:1000000
WDR27   1000000 perm   579 sec   (1726 perm/sec)   p_kst 7.412630e-01   p_cons 1.521000e-03   p_joint 1.112100e-02

Joint ci ratio: 3.692802e-02	ci left: 1.082987e-02	ci right 1.123829e-02	k: 11143	n:1010000
Cons ci ratio: 9.981462e-02	ci left: 1.448630e-03	ci right 1.601776e-03	k: 1539	n:1010000
KS ci ratio: 2.304424e-03	ci left: 7.404130e-01	ci right 7.421222e-01	k: 748681	n:1010000
WDR27   1010000 perm   589 sec   (1715 perm/sec)   p_kst 7.412683e-01   p_cons 1.523762e-03   p_joint 1.103267e-02

Outputting figure to mutsig2_images.part000000000190/WDR27.3_2670_1010000_0.74127_0.0015238_0.011033.png
                gene_name: WDR27
               theta_stop: 0.100 
                    nperm: 1010000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.0015 
      ci_cons_bounds_left: 0.0014 
     ci_cons_bounds_right: 0.0016 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 61 percent done.
WDR47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
Cons ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
KS ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
WDR47   10000 perm   2 sec   (5480 perm/sec)   p_kst 7.100000e-03   p_cons 1.010000e-01   p_joint 3.580000e-02

Joint ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
Cons ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
WDR47   20000 perm   4 sec   (4733 perm/sec)   p_kst 5.400000e-03   p_cons 7.680000e-02   p_joint 8.800000e-03

Joint ci ratio: 2.603472e-01	ci left: 6.523791e-03	ci right 8.506710e-03	k: 224	n:30000
Cons ci ratio: 7.887557e-02	ci left: 7.305854e-02	ci right 7.909053e-02	k: 2281	n:30000
KS ci ratio: 3.034031e-01	ci left: 4.694616e-03	ci right 6.403287e-03	k: 165	n:30000
WDR47   30000 perm   8 sec   (3807 perm/sec)   p_kst 5.500000e-03   p_cons 7.603333e-02   p_joint 7.466667e-03

Joint ci ratio: 1.683371e-01	ci left: 1.224823e-02	ci right 1.452323e-02	k: 534	n:40000
Cons ci ratio: 6.853629e-02	ci left: 7.300312e-02	ci right 7.820869e-02	k: 3023	n:40000
KS ci ratio: 2.691479e-01	ci left: 4.565414e-03	ci right 6.007842e-03	k: 210	n:40000
WDR47   40000 perm   11 sec   (3799 perm/sec)   p_kst 5.250000e-03   p_cons 7.557500e-02   p_joint 1.335000e-02

Joint ci ratio: 2.093994e-01	ci left: 6.231079e-03	ci right 7.707035e-03	k: 347	n:50000
Cons ci ratio: 6.145046e-02	ci left: 7.294263e-02	ci right 7.758682e-02	k: 3762	n:50000
KS ci ratio: 2.406192e-01	ci left: 4.644831e-03	ci right 5.933632e-03	k: 263	n:50000
WDR47   50000 perm   13 sec   (3845 perm/sec)   p_kst 5.260000e-03   p_cons 7.524000e-02   p_joint 6.940000e-03

Joint ci ratio: 1.883590e-01	ci left: 6.491426e-03	ci right 7.856896e-03	k: 429	n:60000
Cons ci ratio: 5.614753e-02	ci left: 7.301988e-02	ci right 7.725466e-02	k: 4507	n:60000
KS ci ratio: 2.155215e-01	ci left: 4.892369e-03	ci right 6.089561e-03	k: 328	n:60000
WDR47   60000 perm   16 sec   (3854 perm/sec)   p_kst 5.466667e-03   p_cons 7.511667e-02   p_joint 7.150000e-03

Joint ci ratio: 1.402110e-01	ci left: 1.026809e-02	ci right 1.182998e-02	k: 772	n:70000
Cons ci ratio: 5.194164e-02	ci left: 7.328514e-02	ci right 7.720730e-02	k: 5266	n:70000
KS ci ratio: 2.029748e-01	ci left: 4.762007e-03	ci right 5.851048e-03	k: 370	n:70000
WDR47   70000 perm   18 sec   (3851 perm/sec)   p_kst 5.285714e-03   p_cons 7.522857e-02   p_joint 1.102857e-02

Joint ci ratio: 1.311877e-01	ci left: 1.031295e-02	ci right 1.177284e-02	k: 882	n:80000
Cons ci ratio: 4.850178e-02	ci left: 7.365369e-02	ci right 7.732716e-02	k: 6038	n:80000
KS ci ratio: 1.900912e-01	ci left: 4.784804e-03	ci right 5.801580e-03	k: 422	n:80000
WDR47   80000 perm   21 sec   (3829 perm/sec)   p_kst 5.275000e-03   p_cons 7.547500e-02   p_joint 1.102500e-02

Joint ci ratio: 1.239613e-01	ci left: 1.030727e-02	ci right 1.168008e-02	k: 988	n:90000
Cons ci ratio: 4.577853e-02	ci left: 7.360619e-02	ci right 7.706569e-02	k: 6779	n:90000
KS ci ratio: 1.801498e-01	ci left: 4.761784e-03	ci right 5.714978e-03	k: 470	n:90000
WDR47   90000 perm   24 sec   (3797 perm/sec)   p_kst 5.222222e-03   p_cons 7.532222e-02   p_joint 1.097778e-02

Joint ci ratio: 1.173245e-01	ci left: 1.039188e-02	ci right 1.169671e-02	k: 1103	n:100000
Cons ci ratio: 4.352418e-02	ci left: 7.339466e-02	ci right 7.667004e-02	k: 7502	n:100000
KS ci ratio: 1.688630e-01	ci left: 4.907269e-03	ci right 5.821781e-03	k: 535	n:100000
WDR47   100000 perm   27 sec   (3759 perm/sec)   p_kst 5.350000e-03   p_cons 7.502000e-02   p_joint 1.103000e-02

Joint ci ratio: 1.118367e-01	ci left: 1.042735e-02	ci right 1.167136e-02	k: 1214	n:110000
Cons ci ratio: 4.136420e-02	ci left: 7.391837e-02	ci right 7.704951e-02	k: 8302	n:110000
KS ci ratio: 1.598637e-01	ci left: 5.001638e-03	ci right 5.879293e-03	k: 597	n:110000
WDR47   110000 perm   30 sec   (3721 perm/sec)   p_kst 5.427273e-03   p_cons 7.547273e-02   p_joint 1.103636e-02

Joint ci ratio: 1.072990e-01	ci left: 1.040943e-02	ci right 1.159772e-02	k: 1319	n:120000
Cons ci ratio: 3.970958e-02	ci left: 7.361495e-02	ci right 7.660562e-02	k: 9012	n:120000
KS ci ratio: 1.533374e-01	ci left: 5.001191e-03	ci right 5.839650e-03	k: 649	n:120000
WDR47   120000 perm   33 sec   (3666 perm/sec)   p_kst 5.408333e-03   p_cons 7.510000e-02   p_joint 1.099167e-02

Joint ci ratio: 9.565439e-02	ci left: 1.214340e-02	ci right 1.337078e-02	k: 1657	n:130000
Cons ci ratio: 3.820695e-02	ci left: 7.347474e-02	ci right 7.634426e-02	k: 9737	n:130000
KS ci ratio: 1.467121e-01	ci left: 5.060713e-03	ci right 5.869279e-03	k: 709	n:130000
WDR47   130000 perm   36 sec   (3630 perm/sec)   p_kst 5.453846e-03   p_cons 7.490000e-02   p_joint 1.274615e-02

Joint ci ratio: 1.002653e-01	ci left: 1.025819e-02	ci right 1.134793e-02	k: 1511	n:140000
Cons ci ratio: 3.686481e-02	ci left: 7.334933e-02	ci right 7.611117e-02	k: 10461	n:140000
KS ci ratio: 1.422777e-01	ci left: 5.009033e-03	ci right 5.783098e-03	k: 754	n:140000
WDR47   140000 perm   39 sec   (3590 perm/sec)   p_kst 5.385714e-03   p_cons 7.472143e-02   p_joint 1.079286e-02

Joint ci ratio: 9.692602e-02	ci left: 1.026355e-02	ci right 1.131549e-02	k: 1617	n:150000
Cons ci ratio: 3.573776e-02	ci left: 7.292482e-02	ci right 7.558500e-02	k: 11137	n:150000
KS ci ratio: 1.368532e-01	ci left: 5.067578e-03	ci right 5.818400e-03	k: 815	n:150000
WDR47   150000 perm   42 sec   (3540 perm/sec)   p_kst 5.433333e-03   p_cons 7.424667e-02   p_joint 1.078000e-02

Joint ci ratio: 9.329964e-02	ci left: 1.040309e-02	ci right 1.142725e-02	k: 1745	n:160000
Cons ci ratio: 3.471914e-02	ci left: 7.251115e-02	ci right 7.507932e-02	k: 11806	n:160000
KS ci ratio: 1.327686e-01	ci left: 5.058853e-03	ci right 5.784246e-03	k: 866	n:160000
WDR47   160000 perm   46 sec   (3504 perm/sec)   p_kst 5.412500e-03   p_cons 7.378750e-02   p_joint 1.090625e-02

Joint ci ratio: 9.027136e-02	ci left: 1.047509e-02	ci right 1.147110e-02	k: 1864	n:170000
Cons ci ratio: 3.370855e-02	ci left: 7.244479e-02	ci right 7.493448e-02	k: 12526	n:170000
KS ci ratio: 1.283978e-01	ci left: 5.102694e-03	ci right 5.808451e-03	k: 926	n:170000
WDR47   170000 perm   49 sec   (3470 perm/sec)   p_kst 5.447059e-03   p_cons 7.368235e-02   p_joint 1.096471e-02

Joint ci ratio: 8.863340e-02	ci left: 1.027328e-02	ci right 1.123146e-02	k: 1934	n:180000
Cons ci ratio: 3.275733e-02	ci left: 7.248603e-02	ci right 7.490550e-02	k: 13264	n:180000
KS ci ratio: 1.250064e-01	ci left: 5.093562e-03	ci right 5.778070e-03	k: 977	n:180000
WDR47   180000 perm   52 sec   (3437 perm/sec)   p_kst 5.427778e-03   p_cons 7.368889e-02   p_joint 1.074444e-02

Joint ci ratio: 8.638708e-02	ci left: 1.025767e-02	ci right 1.118892e-02	k: 2036	n:190000
Cons ci ratio: 3.186393e-02	ci left: 7.260218e-02	ci right 7.495822e-02	k: 14017	n:190000
KS ci ratio: 1.217514e-01	ci left: 5.095819e-03	ci right 5.761513e-03	k: 1030	n:190000
WDR47   190000 perm   56 sec   (3401 perm/sec)   p_kst 5.421053e-03   p_cons 7.377368e-02   p_joint 1.071579e-02

Joint ci ratio: 8.420390e-02	ci left: 1.026838e-02	ci right 1.117588e-02	k: 2143	n:200000
Cons ci ratio: 3.108988e-02	ci left: 7.248909e-02	ci right 7.478329e-02	k: 14726	n:200000
KS ci ratio: 1.180286e-01	ci left: 5.161143e-03	ci right 5.813316e-03	k: 1096	n:200000
WDR47   200000 perm   59 sec   (3366 perm/sec)   p_kst 5.480000e-03   p_cons 7.363000e-02   p_joint 1.071500e-02

Joint ci ratio: 8.210459e-02	ci left: 1.029700e-02	ci right 1.118325e-02	k: 2254	n:210000
Cons ci ratio: 3.034417e-02	ci left: 7.250089e-02	ci right 7.473947e-02	k: 15459	n:210000
KS ci ratio: 1.150762e-01	ci left: 5.178892e-03	ci right 5.815827e-03	k: 1153	n:210000
WDR47   210000 perm   63 sec   (3331 perm/sec)   p_kst 5.490476e-03   p_cons 7.361429e-02   p_joint 1.073333e-02

Joint ci ratio: 8.013772e-02	ci left: 1.032772e-02	ci right 1.119433e-02	k: 2366	n:220000
Cons ci ratio: 2.959741e-02	ci left: 7.275149e-02	ci right 7.494157e-02	k: 16245	n:220000
KS ci ratio: 1.121952e-01	ci left: 5.208468e-03	ci right 5.831941e-03	k: 1213	n:220000
WDR47   220000 perm   67 sec   (3296 perm/sec)   p_kst 5.513636e-03   p_cons 7.384091e-02   p_joint 1.075455e-02

Joint ci ratio: 7.846590e-02	ci left: 1.031337e-02	ci right 1.115990e-02	k: 2468	n:230000
Cons ci ratio: 2.899244e-02	ci left: 7.256197e-02	ci right 7.470096e-02	k: 16934	n:230000
KS ci ratio: 1.099988e-01	ci left: 5.189134e-03	ci right 5.797344e-03	k: 1262	n:230000
WDR47   230000 perm   71 sec   (3251 perm/sec)   p_kst 5.486957e-03   p_cons 7.362609e-02   p_joint 1.073043e-02

Joint ci ratio: 7.995260e-02	ci left: 9.520001e-03	ci right 1.031690e-02	k: 2379	n:240000
Cons ci ratio: 2.838401e-02	ci left: 7.257495e-02	ci right 7.466869e-02	k: 17668	n:240000
KS ci ratio: 1.134487e-01	ci left: 4.669079e-03	ci right 5.234645e-03	k: 1187	n:240000
WDR47   240000 perm   75 sec   (3217 perm/sec)   p_kst 4.945833e-03   p_cons 7.361667e-02   p_joint 9.912500e-03

Joint ci ratio: 7.824431e-02	ci left: 9.550899e-03	ci right 1.033253e-02	k: 2484	n:250000
Cons ci ratio: 2.777326e-02	ci left: 7.277810e-02	ci right 7.483180e-02	k: 18450	n:250000
KS ci ratio: 1.108643e-01	ci left: 4.700036e-03	ci right 5.255536e-03	k: 1243	n:250000
WDR47   250000 perm   79 sec   (3183 perm/sec)   p_kst 4.972000e-03   p_cons 7.380000e-02   p_joint 9.936000e-03

Joint ci ratio: 7.664104e-02	ci left: 9.579587e-03	ci right 1.034678e-02	k: 2589	n:260000
Cons ci ratio: 2.721023e-02	ci left: 7.291637e-02	ci right 7.493160e-02	k: 19219	n:260000
KS ci ratio: 1.085328e-01	ci left: 4.721262e-03	ci right 5.266785e-03	k: 1297	n:260000
WDR47   260000 perm   83 sec   (3149 perm/sec)   p_kst 4.988462e-03   p_cons 7.391923e-02   p_joint 9.957692e-03

Joint ci ratio: 7.533034e-02	ci left: 9.555416e-03	ci right 1.030701e-02	k: 2680	n:270000
Cons ci ratio: 2.671838e-02	ci left: 7.284970e-02	ci right 7.482613e-02	k: 19935	n:270000
KS ci ratio: 1.068601e-01	ci left: 4.694158e-03	ci right 5.227664e-03	k: 1338	n:270000
WDR47   270000 perm   87 sec   (3117 perm/sec)   p_kst 4.955556e-03   p_cons 7.383333e-02   p_joint 9.925926e-03

Joint ci ratio: 7.396347e-02	ci left: 9.564628e-03	ci right 1.030271e-02	k: 2780	n:280000
Cons ci ratio: 2.626531e-02	ci left: 7.272065e-02	ci right 7.465962e-02	k: 20632	n:280000
KS ci ratio: 1.048432e-01	ci left: 4.707309e-03	ci right 5.231589e-03	k: 1390	n:280000
WDR47   280000 perm   91 sec   (3084 perm/sec)   p_kst 4.964286e-03   p_cons 7.368571e-02   p_joint 9.928571e-03

Joint ci ratio: 7.277053e-02	ci left: 9.546231e-03	ci right 1.027051e-02	k: 2872	n:290000
Cons ci ratio: 2.581364e-02	ci left: 7.271045e-02	ci right 7.461532e-02	k: 21361	n:290000
KS ci ratio: 1.035147e-01	ci left: 4.665886e-03	ci right 5.178567e-03	k: 1426	n:290000
WDR47   290000 perm   95 sec   (3049 perm/sec)   p_kst 4.917241e-03   p_cons 7.365862e-02   p_joint 9.903448e-03

Joint ci ratio: 7.146330e-02	ci left: 9.574990e-03	ci right 1.028786e-02	k: 2978	n:300000
Cons ci ratio: 2.539132e-02	ci left: 7.266476e-02	ci right 7.453682e-02	k: 22079	n:300000
KS ci ratio: 1.018167e-01	ci left: 4.666248e-03	ci right 5.170055e-03	k: 1474	n:300000
WDR47   300000 perm   100 sec   (3014 perm/sec)   p_kst 4.913333e-03   p_cons 7.359667e-02   p_joint 9.926667e-03

Joint ci ratio: 7.617119e-02	ci left: 8.148175e-03	ci right 8.796548e-03	k: 2625	n:310000
Cons ci ratio: 2.497311e-02	ci left: 7.270884e-02	ci right 7.455075e-02	k: 22824	n:310000
KS ci ratio: 9.996898e-02	ci left: 4.688669e-03	ci right 5.185171e-03	k: 1529	n:310000
WDR47   310000 perm   104 sec   (2981 perm/sec)   p_kst 4.932258e-03   p_cons 7.362581e-02   p_joint 8.467742e-03

Outputting figure to mutsig2_images.part000000000190/WDR47.3_2840_310000_0.0049323_0.073626_0.0084677.png
                gene_name: WDR47
               theta_stop: 0.100 
                    nperm: 310000 
                     p_ks: 0.0049 
        ci_ks_bounds_left: 0.0047 
       ci_ks_bounds_right: 0.0052 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0088 

Current progress: 62 percent done.
WDR69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
Cons ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
KS ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
WDR69   10000 perm   2 sec   (6102 perm/sec)   p_kst 4.024000e-01   p_cons 8.429000e-01   p_joint 4.646000e-01

Outputting figure to mutsig2_images.part000000000190/WDR69.3_1300_10000_0.4024_0.8429_0.4646.png
                gene_name: WDR69
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 64 percent done.
WDR78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
WDR78   10000 perm   2 sec   (5582 perm/sec)   p_kst 8.645000e-01   p_cons 1.862000e-01   p_joint 6.293000e-01

Outputting figure to mutsig2_images.part000000000190/WDR78.3_2672_10000_0.8645_0.1862_0.6293.png
                gene_name: WDR78
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 66 percent done.
WDYHV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
WDYHV1   10000 perm   2 sec   (6454 perm/sec)   p_kst 4.200000e-02   p_cons 3.357000e-01   p_joint 5.170000e-02

Joint ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
Cons ci ratio: 4.001051e-02	ci left: 3.177636e-01	ci right 3.307875e-01	k: 6485	n:20000
KS ci ratio: 1.304457e-01	ci left: 4.037551e-02	ci right 4.605825e-02	k: 863	n:20000
WDYHV1   20000 perm   3 sec   (5835 perm/sec)   p_kst 4.315000e-02   p_cons 3.242500e-01   p_joint 6.380000e-02

Joint ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
Cons ci ratio: 3.273566e-02	ci left: 3.180742e-01	ci right 3.286934e-01	k: 9701	n:30000
KS ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
WDYHV1   30000 perm   5 sec   (5571 perm/sec)   p_kst 4.286667e-02   p_cons 3.233667e-01   p_joint 4.846667e-02

Joint ci ratio: 8.089338e-02	ci left: 5.320256e-02	ci right 5.771225e-02	k: 2217	n:40000
Cons ci ratio: 2.849468e-02	ci left: 3.165749e-01	ci right 3.257511e-01	k: 12846	n:40000
KS ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
WDYHV1   40000 perm   7 sec   (5379 perm/sec)   p_kst 4.235000e-02   p_cons 3.211500e-01   p_joint 5.542500e-02

Outputting figure to mutsig2_images.part000000000190/WDYHV1.3_642_40000_0.04235_0.32115_0.055425.png
                gene_name: WDYHV1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 67 percent done.
WEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
WEE1   10000 perm   2 sec   (5873 perm/sec)   p_kst 7.802000e-01   p_cons 5.500000e-02   p_joint 2.913000e-01

Joint ci ratio: 4.952880e-02	ci left: 2.325575e-01	ci right 2.444186e-01	k: 4769	n:20000
Cons ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
KS ci ratio: 1.471459e-02	ci left: 7.743448e-01	ci right 7.858736e-01	k: 15603	n:20000
WEE1   20000 perm   4 sec   (5087 perm/sec)   p_kst 7.801500e-01   p_cons 5.485000e-02   p_joint 2.384500e-01

Joint ci ratio: 4.568303e-02	ci left: 1.925452e-01	ci right 2.015802e-01	k: 5911	n:30000
Cons ci ratio: 9.531799e-02	ci left: 5.081738e-02	ci right 5.593622e-02	k: 1600	n:30000
KS ci ratio: 1.203831e-02	ci left: 7.747314e-01	ci right 7.841477e-01	k: 23384	n:30000
WEE1   30000 perm   6 sec   (4892 perm/sec)   p_kst 7.794667e-01   p_cons 5.333333e-02   p_joint 1.970333e-01

Outputting figure to mutsig2_images.part000000000190/WEE1.3_1985_30000_0.77947_0.053333_0.19703.png
                gene_name: WEE1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 69 percent done.
WBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
Cons ci ratio: 2.350084e-02	ci left: 7.268385e-01	ci right 7.442241e-01	k: 7356	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
WBP1   10000 perm   1 sec   (7050 perm/sec)   p_kst 1.300000e-03   p_cons 7.356000e-01   p_joint 3.450000e-02

Joint ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
Cons ci ratio: 1.755339e-02	ci left: 7.074299e-01	ci right 7.200080e-01	k: 14275	n:20000
KS ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
WBP1   20000 perm   3 sec   (6081 perm/sec)   p_kst 1.100000e-03   p_cons 7.137500e-01   p_joint 3.300000e-03

Joint ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
Cons ci ratio: 1.448039e-02	ci left: 7.043594e-01	ci right 7.146667e-01	k: 21286	n:30000
KS ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
WBP1   30000 perm   5 sec   (5795 perm/sec)   p_kst 9.666667e-04   p_cons 7.095333e-01   p_joint 2.600000e-03

Joint ci ratio: 2.571681e-01	ci left: 5.032596e-03	ci right 6.540513e-03	k: 230	n:40000
Cons ci ratio: 1.249431e-02	ci left: 7.065803e-01	ci right 7.154891e-01	k: 28442	n:40000
KS ci ratio: 5.906298e-01	ci left: 7.780887e-04	ci right 1.447748e-03	k: 43	n:40000
WBP1   40000 perm   7 sec   (5609 perm/sec)   p_kst 1.075000e-03   p_cons 7.110500e-01   p_joint 5.750000e-03

Joint ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
Cons ci ratio: 1.117174e-02	ci left: 7.071853e-01	ci right 7.151502e-01	k: 35559	n:50000
KS ci ratio: 5.144175e-01	ci left: 8.635357e-04	ci right 1.476753e-03	k: 57	n:50000
WBP1   50000 perm   9 sec   (5457 perm/sec)   p_kst 1.140000e-03   p_cons 7.111800e-01   p_joint 5.200000e-03

Joint ci ratio: 1.647256e-01	ci left: 8.579401e-03	ci right 1.013528e-02	k: 560	n:60000
Cons ci ratio: 1.021567e-02	ci left: 7.068359e-01	ci right 7.141104e-01	k: 42629	n:60000
KS ci ratio: 4.750964e-01	ci left: 8.655029e-04	ci right 1.417913e-03	k: 67	n:60000
WBP1   60000 perm   11 sec   (5321 perm/sec)   p_kst 1.116667e-03   p_cons 7.104833e-01   p_joint 9.333333e-03

Joint ci ratio: 1.524477e-01	ci left: 8.643420e-03	ci right 1.008340e-02	k: 654	n:70000
Cons ci ratio: 9.455858e-03	ci left: 7.071961e-01	ci right 7.139293e-01	k: 49740	n:70000
KS ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
WBP1   70000 perm   13 sec   (5195 perm/sec)   p_kst 1.071429e-03   p_cons 7.105714e-01   p_joint 9.342857e-03

Joint ci ratio: 1.488037e-01	ci left: 7.959734e-03	ci right 9.251282e-03	k: 687	n:80000
Cons ci ratio: 8.837281e-03	ci left: 7.077823e-01	ci right 7.140774e-01	k: 56875	n:80000
KS ci ratio: 4.249551e-01	ci left: 8.376049e-04	ci right 1.299809e-03	k: 84	n:80000
WBP1   80000 perm   16 sec   (5083 perm/sec)   p_kst 1.050000e-03   p_cons 7.109375e-01   p_joint 8.587500e-03

Joint ci ratio: 1.890282e-01	ci left: 4.305975e-03	ci right 5.215287e-03	k: 427	n:90000
Cons ci ratio: 8.340518e-03	ci left: 7.075358e-01	ci right 7.134728e-01	k: 63946	n:90000
KS ci ratio: 3.998677e-01	ci left: 8.540888e-04	ci right 1.290210e-03	k: 95	n:90000
WBP1   90000 perm   18 sec   (4981 perm/sec)   p_kst 1.055556e-03   p_cons 7.105111e-01   p_joint 4.744444e-03

Joint ci ratio: 1.360785e-01	ci left: 7.669683e-03	ci right 8.799120e-03	k: 822	n:100000
Cons ci ratio: 7.917729e-03	ci left: 7.074172e-01	ci right 7.130506e-01	k: 71024	n:100000
KS ci ratio: 3.823500e-01	ci left: 8.498320e-04	ci right 1.259995e-03	k: 104	n:100000
WBP1   100000 perm   21 sec   (4878 perm/sec)   p_kst 1.040000e-03   p_cons 7.102400e-01   p_joint 8.220000e-03

Joint ci ratio: 1.297675e-01	ci left: 7.693118e-03	ci right 8.769416e-03	k: 904	n:110000
Cons ci ratio: 7.162655e-03	ci left: 7.287610e-01	ci right 7.340086e-01	k: 80453	n:110000
KS ci ratio: 3.622097e-01	ci left: 8.714672e-04	ci right 1.264694e-03	k: 116	n:110000
WBP1   110000 perm   23 sec   (4785 perm/sec)   p_kst 1.054545e-03   p_cons 7.313909e-01   p_joint 8.218182e-03

Joint ci ratio: 1.678416e-01	ci left: 4.145128e-03	ci right 4.912453e-03	k: 542	n:120000
Cons ci ratio: 6.849128e-03	ci left: 7.293672e-01	ci right 7.343882e-01	k: 87826	n:120000
KS ci ratio: 3.436190e-01	ci left: 8.975828e-04	ci right 1.277192e-03	k: 129	n:120000
WBP1   120000 perm   26 sec   (4689 perm/sec)   p_kst 1.075000e-03   p_cons 7.318833e-01   p_joint 4.516667e-03

Joint ci ratio: 1.603355e-01	ci left: 4.209863e-03	ci right 4.950964e-03	k: 594	n:130000
Cons ci ratio: 6.573058e-03	ci left: 7.299073e-01	ci right 7.347285e-01	k: 95202	n:130000
KS ci ratio: 3.242380e-01	ci left: 9.413080e-04	ci right 1.312292e-03	k: 145	n:130000
WBP1   130000 perm   28 sec   (4606 perm/sec)   p_kst 1.115385e-03   p_cons 7.323231e-01   p_joint 4.569231e-03

Joint ci ratio: 2.182009e-01	ci left: 2.049106e-03	ci right 2.557573e-03	k: 321	n:140000
Cons ci ratio: 6.327407e-03	ci left: 7.304021e-01	ci right 7.350454e-01	k: 102582	n:140000
KS ci ratio: 3.126735e-01	ci left: 9.463656e-04	ci right 1.303386e-03	k: 156	n:140000
WBP1   140000 perm   31 sec   (4521 perm/sec)   p_kst 1.114286e-03   p_cons 7.327286e-01   p_joint 2.292857e-03

Joint ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
Cons ci ratio: 6.122459e-03	ci left: 7.298644e-01	ci right 7.343533e-01	k: 109817	n:150000
KS ci ratio: 3.013675e-01	ci left: 9.571146e-04	ci right 1.302635e-03	k: 168	n:150000
WBP1   150000 perm   34 sec   (4441 perm/sec)   p_kst 1.120000e-03   p_cons 7.321133e-01   p_joint 4.446667e-03

Joint ci ratio: 1.173562e-01	ci left: 6.518423e-03	ci right 7.337098e-03	k: 1107	n:160000
Cons ci ratio: 5.932499e-03	ci left: 7.296407e-01	ci right 7.339884e-01	k: 117091	n:160000
KS ci ratio: 2.904035e-01	ci left: 9.725175e-04	ci right 1.308480e-03	k: 181	n:160000
WBP1   160000 perm   37 sec   (4364 perm/sec)   p_kst 1.131250e-03   p_cons 7.318187e-01   p_joint 6.918750e-03

Joint ci ratio: 1.903591e-01	ci left: 2.251386e-03	ci right 2.730538e-03	k: 422	n:170000
Cons ci ratio: 5.754955e-03	ci left: 7.297343e-01	ci right 7.339519e-01	k: 124414	n:170000
KS ci ratio: 2.827410e-01	ci left: 9.699069e-04	ci right 1.294551e-03	k: 191	n:170000
WBP1   170000 perm   40 sec   (4290 perm/sec)   p_kst 1.123529e-03   p_cons 7.318471e-01   p_joint 2.482353e-03

Joint ci ratio: 1.919711e-01	ci left: 2.089265e-03	ci right 2.538116e-03	k: 415	n:180000
Cons ci ratio: 5.591028e-03	ci left: 7.299195e-01	ci right 7.340175e-01	k: 131755	n:180000
KS ci ratio: 2.763403e-01	ci left: 9.625182e-04	ci right 1.276128e-03	k: 200	n:180000
WBP1   180000 perm   43 sec   (4219 perm/sec)   p_kst 1.111111e-03   p_cons 7.319722e-01   p_joint 2.305556e-03

Joint ci ratio: 1.870883e-01	ci left: 2.089599e-03	ci right 2.525808e-03	k: 437	n:190000
Cons ci ratio: 5.434150e-03	ci left: 7.305351e-01	ci right 7.345210e-01	k: 139181	n:190000
KS ci ratio: 2.678140e-01	ci left: 9.756151e-04	ci right 1.282038e-03	k: 213	n:190000
WBP1   190000 perm   46 sec   (4150 perm/sec)   p_kst 1.121053e-03   p_cons 7.325316e-01   p_joint 2.300000e-03

Joint ci ratio: 1.819664e-01	ci left: 2.104347e-03	ci right 2.530283e-03	k: 462	n:200000
Cons ci ratio: 5.298604e-03	ci left: 7.304339e-01	ci right 7.343194e-01	k: 146476	n:200000
KS ci ratio: 2.577674e-01	ci left: 1.006239e-03	ci right 1.308518e-03	k: 230	n:200000
WBP1   200000 perm   49 sec   (4083 perm/sec)   p_kst 1.150000e-03   p_cons 7.323800e-01   p_joint 2.310000e-03

Joint ci ratio: 1.910846e-01	ci left: 1.808907e-03	ci right 2.195522e-03	k: 419	n:210000
Cons ci ratio: 5.168195e-03	ci left: 7.306871e-01	ci right 7.344779e-01	k: 153843	n:210000
KS ci ratio: 2.492763e-01	ci left: 1.029675e-03	ci right 1.327226e-03	k: 246	n:210000
WBP1   210000 perm   52 sec   (4019 perm/sec)   p_kst 1.171429e-03   p_cons 7.325857e-01   p_joint 1.995238e-03

Joint ci ratio: 1.864791e-01	ci left: 1.817628e-03	ci right 2.195685e-03	k: 440	n:220000
Cons ci ratio: 5.053872e-03	ci left: 7.303808e-01	ci right 7.340859e-01	k: 161092	n:220000
KS ci ratio: 2.443795e-01	ci left: 1.025515e-03	ci right 1.315158e-03	k: 256	n:220000
WBP1   220000 perm   56 sec   (3958 perm/sec)   p_kst 1.163636e-03   p_cons 7.322364e-01   p_joint 2.000000e-03

Joint ci ratio: 1.812113e-01	ci left: 1.846445e-03	ci right 2.218457e-03	k: 466	n:230000
Cons ci ratio: 4.943846e-03	ci left: 7.303373e-01	ci right 7.339612e-01	k: 168395	n:230000
KS ci ratio: 2.388663e-01	ci left: 1.029943e-03	ci right 1.313304e-03	k: 268	n:230000
WBP1   230000 perm   59 sec   (3898 perm/sec)   p_kst 1.165217e-03   p_cons 7.321522e-01   p_joint 2.026087e-03

Joint ci ratio: 1.781862e-01	ci left: 1.833177e-03	ci right 2.195685e-03	k: 482	n:240000
Cons ci ratio: 4.842454e-03	ci left: 7.301563e-01	ci right 7.337048e-01	k: 175664	n:240000
KS ci ratio: 2.353935e-01	ci left: 1.018381e-03	ci right 1.293894e-03	k: 276	n:240000
WBP1   240000 perm   62 sec   (3843 perm/sec)   p_kst 1.150000e-03   p_cons 7.319333e-01   p_joint 2.008333e-03

Joint ci ratio: 1.871403e-01	ci left: 1.588056e-03	ci right 1.919666e-03	k: 437	n:250000
Cons ci ratio: 4.742457e-03	ci left: 7.303713e-01	ci right 7.338473e-01	k: 183028	n:250000
KS ci ratio: 2.300563e-01	ci left: 1.026615e-03	ci right 1.297164e-03	k: 289	n:250000
WBP1   250000 perm   66 sec   (3790 perm/sec)   p_kst 1.156000e-03   p_cons 7.321120e-01   p_joint 1.748000e-03

Joint ci ratio: 1.893240e-01	ci left: 1.490321e-03	ci right 1.805571e-03	k: 427	n:260000
Cons ci ratio: 4.647130e-03	ci left: 7.306784e-01	ci right 7.340857e-01	k: 190420	n:260000
KS ci ratio: 2.269489e-01	ci left: 1.016137e-03	ci right 1.279801e-03	k: 297	n:260000
WBP1   260000 perm   70 sec   (3735 perm/sec)   p_kst 1.142308e-03   p_cons 7.323846e-01   p_joint 1.642308e-03

Joint ci ratio: 1.668268e-01	ci left: 1.870483e-03	ci right 2.214421e-03	k: 550	n:270000
Cons ci ratio: 4.559090e-03	ci left: 7.308111e-01	ci right 7.341542e-01	k: 197771	n:270000
KS ci ratio: 2.232349e-01	ci left: 1.013451e-03	ci right 1.271523e-03	k: 307	n:270000
WBP1   270000 perm   73 sec   (3683 perm/sec)   p_kst 1.137037e-03   p_cons 7.324852e-01   p_joint 2.037037e-03

Joint ci ratio: 1.635924e-01	ci left: 1.879003e-03	ci right 2.217151e-03	k: 572	n:280000
Cons ci ratio: 4.477013e-03	ci left: 7.308348e-01	ci right 7.341176e-01	k: 205094	n:280000
KS ci ratio: 2.186672e-01	ci left: 1.021116e-03	ci right 1.275105e-03	k: 320	n:280000
WBP1   280000 perm   77 sec   (3632 perm/sec)   p_kst 1.142857e-03   p_cons 7.324786e-01   p_joint 2.042857e-03

Joint ci ratio: 1.612193e-01	ci left: 1.870448e-03	ci right 2.201699e-03	k: 589	n:290000
Cons ci ratio: 4.399564e-03	ci left: 7.308262e-01	ci right 7.340520e-01	k: 212408	n:290000
KS ci ratio: 2.130952e-01	ci left: 1.041358e-03	ci right 1.292919e-03	k: 337	n:290000
WBP1   290000 perm   81 sec   (3583 perm/sec)   p_kst 1.162069e-03   p_cons 7.324414e-01   p_joint 2.031034e-03

Joint ci ratio: 1.576506e-01	ci left: 1.894511e-03	ci right 2.221894e-03	k: 616	n:300000
Cons ci ratio: 4.322762e-03	ci left: 7.311125e-01	ci right 7.342830e-01	k: 219810	n:300000
KS ci ratio: 2.091113e-01	ci left: 1.047689e-03	ci right 1.295442e-03	k: 350	n:300000
WBP1   300000 perm   85 sec   (3535 perm/sec)   p_kst 1.166667e-03   p_cons 7.327000e-01   p_joint 2.053333e-03

Joint ci ratio: 1.551561e-01	ci left: 1.895389e-03	ci right 2.217260e-03	k: 636	n:310000
Cons ci ratio: 4.254220e-03	ci left: 7.309768e-01	ci right 7.340963e-01	k: 227087	n:310000
KS ci ratio: 2.061953e-01	ci left: 1.044473e-03	ci right 1.287587e-03	k: 360	n:310000
WBP1   310000 perm   89 sec   (3491 perm/sec)   p_kst 1.161290e-03   p_cons 7.325387e-01   p_joint 2.051613e-03

Joint ci ratio: 1.528931e-01	ci left: 1.893244e-03	ci right 2.209632e-03	k: 655	n:320000
Cons ci ratio: 4.188603e-03	ci left: 7.308719e-01	ci right 7.339427e-01	k: 234371	n:320000
KS ci ratio: 2.031240e-01	ci left: 1.044447e-03	ci right 1.283484e-03	k: 371	n:320000
WBP1   320000 perm   93 sec   (3439 perm/sec)   p_kst 1.159375e-03   p_cons 7.324094e-01   p_joint 2.046875e-03

Joint ci ratio: 1.503917e-01	ci left: 1.900011e-03	ci right 2.211867e-03	k: 677	n:330000
Cons ci ratio: 4.123570e-03	ci left: 7.309983e-01	ci right 7.340218e-01	k: 241729	n:330000
KS ci ratio: 1.991476e-01	ci left: 1.055963e-03	ci right 1.292331e-03	k: 386	n:330000
WBP1   330000 perm   98 sec   (3380 perm/sec)   p_kst 1.169697e-03   p_cons 7.325121e-01   p_joint 2.051515e-03

Joint ci ratio: 1.487564e-01	ci left: 1.886594e-03	ci right 2.192581e-03	k: 692	n:340000
Cons ci ratio: 4.061657e-03	ci left: 7.311000e-01	ci right 7.340784e-01	k: 249081	n:340000
KS ci ratio: 1.973720e-01	ci left: 1.044471e-03	ci right 1.275931e-03	k: 393	n:340000
WBP1   340000 perm   102 sec   (3336 perm/sec)   p_kst 1.155882e-03   p_cons 7.325912e-01   p_joint 2.035294e-03

Joint ci ratio: 1.470693e-01	ci left: 1.876713e-03	ci right 2.177342e-03	k: 708	n:350000
Cons ci ratio: 4.004524e-03	ci left: 7.309930e-01	ci right 7.339289e-01	k: 256362	n:350000
KS ci ratio: 1.946734e-01	ci left: 1.044515e-03	ci right 1.272445e-03	k: 404	n:350000
WBP1   350000 perm   106 sec   (3298 perm/sec)   p_kst 1.154286e-03   p_cons 7.324629e-01   p_joint 2.022857e-03

Joint ci ratio: 1.447398e-01	ci left: 1.886139e-03	ci right 2.183079e-03	k: 731	n:360000
Cons ci ratio: 3.950099e-03	ci left: 7.308560e-01	ci right 7.337514e-01	k: 263630	n:360000
KS ci ratio: 1.918517e-01	ci left: 1.047222e-03	ci right 1.272043e-03	k: 416	n:360000
WBP1   360000 perm   110 sec   (3259 perm/sec)   p_kst 1.155556e-03   p_cons 7.323056e-01   p_joint 2.030556e-03

Joint ci ratio: 1.426123e-01	ci left: 1.892485e-03	ci right 2.185672e-03	k: 753	n:370000
Cons ci ratio: 3.898020e-03	ci left: 7.307078e-01	ci right 7.335643e-01	k: 270891	n:370000
KS ci ratio: 1.880554e-01	ci left: 1.062680e-03	ci right 1.285791e-03	k: 433	n:370000
WBP1   370000 perm   115 sec   (3222 perm/sec)   p_kst 1.170270e-03   p_cons 7.321378e-01   p_joint 2.035135e-03

Joint ci ratio: 1.409403e-01	ci left: 1.888370e-03	ci right 2.177202e-03	k: 771	n:380000
Cons ci ratio: 3.845856e-03	ci left: 7.307811e-01	ci right 7.335996e-01	k: 278233	n:380000
KS ci ratio: 1.857167e-01	ci left: 1.062308e-03	ci right 1.282254e-03	k: 444	n:380000
WBP1   380000 perm   119 sec   (3184 perm/sec)   p_kst 1.168421e-03   p_cons 7.321921e-01   p_joint 2.028947e-03

Joint ci ratio: 1.390615e-01	ci left: 1.891911e-03	ci right 2.177107e-03	k: 792	n:390000
Cons ci ratio: 3.796576e-03	ci left: 7.307636e-01	ci right 7.335458e-01	k: 285541	n:390000
KS ci ratio: 1.832622e-01	ci left: 1.064418e-03	ci right 1.281564e-03	k: 456	n:390000
WBP1   390000 perm   124 sec   (3147 perm/sec)   p_kst 1.169231e-03   p_cons 7.321564e-01   p_joint 2.030769e-03

Joint ci ratio: 1.378511e-01	ci left: 1.878400e-03	ci right 2.158892e-03	k: 806	n:400000
Cons ci ratio: 3.748498e-03	ci left: 7.308148e-01	ci right 7.335618e-01	k: 292876	n:400000
KS ci ratio: 1.807096e-01	ci left: 1.068827e-03	ci right 1.283504e-03	k: 469	n:400000
WBP1   400000 perm   129 sec   (3110 perm/sec)   p_kst 1.172500e-03   p_cons 7.321900e-01   p_joint 2.015000e-03

Joint ci ratio: 1.361740e-01	ci left: 1.879694e-03	ci right 2.156688e-03	k: 826	n:410000
Cons ci ratio: 3.700496e-03	ci left: 7.310445e-01	ci right 7.337571e-01	k: 300285	n:410000
KS ci ratio: 1.771626e-01	ci left: 1.087025e-03	ci right 1.300613e-03	k: 488	n:410000
WBP1   410000 perm   133 sec   (3073 perm/sec)   p_kst 1.190244e-03   p_cons 7.324024e-01   p_joint 2.014634e-03

Joint ci ratio: 1.343186e-01	ci left: 1.887849e-03	ci right 2.161951e-03	k: 849	n:420000
Cons ci ratio: 3.657311e-03	ci left: 7.309391e-01	ci right 7.336196e-01	k: 307558	n:420000
KS ci ratio: 1.755550e-01	ci left: 1.081626e-03	ci right 1.292019e-03	k: 497	n:420000
WBP1   420000 perm   138 sec   (3039 perm/sec)   p_kst 1.183333e-03   p_cons 7.322810e-01   p_joint 2.021429e-03

Joint ci ratio: 1.331497e-01	ci left: 1.877661e-03	ci right 2.147724e-03	k: 864	n:430000
Cons ci ratio: 3.614423e-03	ci left: 7.309669e-01	ci right 7.336160e-01	k: 314886	n:430000
KS ci ratio: 1.736479e-01	ci left: 1.080935e-03	ci right 1.288671e-03	k: 508	n:430000
WBP1   430000 perm   143 sec   (3008 perm/sec)   p_kst 1.181395e-03   p_cons 7.322930e-01   p_joint 2.009302e-03

Joint ci ratio: 1.381212e-01	ci left: 1.701043e-03	ci right 1.955589e-03	k: 803	n:440000
Cons ci ratio: 3.571372e-03	ci left: 7.311735e-01	ci right 7.337917e-01	k: 322293	n:440000
KS ci ratio: 1.716364e-01	ci left: 1.082463e-03	ci right 1.287833e-03	k: 520	n:440000
WBP1   440000 perm   148 sec   (2976 perm/sec)   p_kst 1.181818e-03   p_cons 7.324841e-01   p_joint 1.825000e-03

Joint ci ratio: 1.297437e-01	ci left: 1.893072e-03	ci right 2.157850e-03	k: 910	n:450000
Cons ci ratio: 3.531264e-03	ci left: 7.312107e-01	ci right 7.337996e-01	k: 329628	n:450000
KS ci ratio: 1.696933e-01	ci left: 1.083936e-03	ci right 1.287019e-03	k: 532	n:450000
WBP1   450000 perm   153 sec   (2945 perm/sec)   p_kst 1.182222e-03   p_cons 7.325067e-01   p_joint 2.022222e-03

Joint ci ratio: 1.282047e-01	ci left: 1.898201e-03	ci right 2.160308e-03	k: 932	n:460000
Cons ci ratio: 3.493640e-03	ci left: 7.311159e-01	ci right 7.336768e-01	k: 336903	n:460000
KS ci ratio: 1.681238e-01	ci left: 1.081192e-03	ci right 1.281698e-03	k: 542	n:460000
WBP1   460000 perm   158 sec   (2914 perm/sec)   p_kst 1.178261e-03   p_cons 7.323978e-01   p_joint 2.026087e-03

Joint ci ratio: 1.265202e-01	ci left: 1.909311e-03	ci right 2.169229e-03	k: 957	n:470000
Cons ci ratio: 3.457587e-03	ci left: 7.309806e-01	ci right 7.335145e-01	k: 344157	n:470000
KS ci ratio: 1.664465e-01	ci left: 1.080612e-03	ci right 1.278811e-03	k: 553	n:470000
WBP1   470000 perm   163 sec   (2882 perm/sec)   p_kst 1.176596e-03   p_cons 7.322489e-01   p_joint 2.036170e-03

Joint ci ratio: 1.253484e-01	ci left: 1.905853e-03	ci right 2.162718e-03	k: 975	n:480000
Cons ci ratio: 3.422098e-03	ci left: 7.309115e-01	ci right 7.334191e-01	k: 351440	n:480000
KS ci ratio: 1.648184e-01	ci left: 1.080066e-03	ci right 1.276035e-03	k: 564	n:480000
WBP1   480000 perm   168 sec   (2852 perm/sec)   p_kst 1.175000e-03   p_cons 7.321667e-01   p_joint 2.031250e-03

Joint ci ratio: 1.239589e-01	ci left: 1.910456e-03	ci right 2.164878e-03	k: 997	n:490000
Cons ci ratio: 3.387205e-03	ci left: 7.309005e-01	ci right 7.333824e-01	k: 358750	n:490000
KS ci ratio: 1.626726e-01	ci left: 1.087382e-03	ci right 1.281858e-03	k: 579	n:490000
WBP1   490000 perm   174 sec   (2822 perm/sec)   p_kst 1.181633e-03   p_cons 7.321429e-01   p_joint 2.034694e-03

Joint ci ratio: 1.229168e-01	ci left: 1.905197e-03	ci right 2.156630e-03	k: 1014	n:500000
Cons ci ratio: 3.352605e-03	ci left: 7.309783e-01	ci right 7.334350e-01	k: 366104	n:500000
KS ci ratio: 1.612884e-01	ci left: 1.084824e-03	ci right 1.277031e-03	k: 589	n:500000
WBP1   500000 perm   179 sec   (2793 perm/sec)   p_kst 1.178000e-03   p_cons 7.322080e-01   p_joint 2.028000e-03

Joint ci ratio: 1.215471e-01	ci left: 1.911559e-03	ci right 2.160819e-03	k: 1037	n:510000
Cons ci ratio: 3.319376e-03	ci left: 7.310138e-01	ci right 7.334463e-01	k: 373438	n:510000
KS ci ratio: 1.594079e-01	ci left: 1.089902e-03	ci right 1.280543e-03	k: 603	n:510000
WBP1   510000 perm   185 sec   (2764 perm/sec)   p_kst 1.182353e-03   p_cons 7.322314e-01   p_joint 2.033333e-03

Joint ci ratio: 1.235329e-01	ci left: 1.813276e-03	ci right 2.053866e-03	k: 1004	n:520000
Cons ci ratio: 3.285745e-03	ci left: 7.312118e-01	ci right 7.336202e-01	k: 380857	n:520000
KS ci ratio: 1.583632e-01	ci left: 1.083715e-03	ci right 1.271913e-03	k: 611	n:520000
WBP1   520000 perm   190 sec   (2736 perm/sec)   p_kst 1.175000e-03   p_cons 7.324173e-01   p_joint 1.930769e-03

Joint ci ratio: 1.191049e-01	ci left: 1.918116e-03	ci right 2.162851e-03	k: 1080	n:530000
Cons ci ratio: 3.255777e-03	ci left: 7.310812e-01	ci right 7.334672e-01	k: 388106	n:530000
KS ci ratio: 1.568330e-01	ci left: 1.085017e-03	ci right 1.271448e-03	k: 623	n:530000
WBP1   530000 perm   196 sec   (2710 perm/sec)   p_kst 1.175472e-03   p_cons 7.322755e-01   p_joint 2.037736e-03

Joint ci ratio: 1.210874e-01	ci left: 1.819721e-03	ci right 2.056044e-03	k: 1045	n:540000
Cons ci ratio: 3.225441e-03	ci left: 7.310984e-01	ci right 7.334621e-01	k: 395432	n:540000
KS ci ratio: 1.552243e-01	ci left: 1.088058e-03	ci right 1.272916e-03	k: 636	n:540000
WBP1   540000 perm   201 sec   (2684 perm/sec)   p_kst 1.177778e-03   p_cons 7.322815e-01   p_joint 1.935185e-03

Joint ci ratio: 1.171703e-01	ci left: 1.911886e-03	ci right 2.151590e-03	k: 1116	n:550000
Cons ci ratio: 3.196278e-03	ci left: 7.310731e-01	ci right 7.334153e-01	k: 402735	n:550000
KS ci ratio: 1.536640e-01	ci left: 1.090998e-03	ci right 1.274321e-03	k: 649	n:550000
WBP1   550000 perm   207 sec   (2655 perm/sec)   p_kst 1.180000e-03   p_cons 7.322455e-01   p_joint 2.029091e-03

Joint ci ratio: 1.188912e-01	ci left: 1.822284e-03	ci right 2.054345e-03	k: 1084	n:560000
Cons ci ratio: 3.167690e-03	ci left: 7.310739e-01	ci right 7.333951e-01	k: 410052	n:560000
KS ci ratio: 1.519207e-01	ci left: 1.097278e-03	ci right 1.279374e-03	k: 664	n:560000
WBP1   560000 perm   213 sec   (2628 perm/sec)   p_kst 1.185714e-03   p_cons 7.322357e-01   p_joint 1.935714e-03

Joint ci ratio: 1.180245e-01	ci left: 1.817553e-03	ci right 2.047206e-03	k: 1100	n:570000
Cons ci ratio: 3.139813e-03	ci left: 7.310800e-01	ci right 7.333808e-01	k: 417372	n:570000
KS ci ratio: 1.510155e-01	ci left: 1.091530e-03	ci right 1.271496e-03	k: 672	n:570000
WBP1   570000 perm   219 sec   (2598 perm/sec)   p_kst 1.178947e-03   p_cons 7.322316e-01   p_joint 1.929825e-03

Joint ci ratio: 1.170192e-01	ci left: 1.818011e-03	ci right 2.045631e-03	k: 1119	n:580000
Cons ci ratio: 3.112660e-03	ci left: 7.310860e-01	ci right 7.333669e-01	k: 424692	n:580000
KS ci ratio: 1.496869e-01	ci left: 1.092622e-03	ci right 1.271041e-03	k: 684	n:580000
WBP1   580000 perm   226 sec   (2564 perm/sec)   p_kst 1.179310e-03   p_cons 7.322276e-01   p_joint 1.929310e-03

Joint ci ratio: 1.156834e-01	ci left: 1.829983e-03	ci right 2.056308e-03	k: 1145	n:590000
Cons ci ratio: 3.085946e-03	ci left: 7.311241e-01	ci right 7.333855e-01	k: 432031	n:590000
KS ci ratio: 1.484994e-01	ci left: 1.092052e-03	ci right 1.268837e-03	k: 695	n:590000
WBP1   590000 perm   233 sec   (2537 perm/sec)   p_kst 1.177966e-03   p_cons 7.322559e-01   p_joint 1.940678e-03

Joint ci ratio: 1.120690e-01	ci left: 1.920929e-03	ci right 2.150588e-03	k: 1220	n:600000
Cons ci ratio: 3.059856e-03	ci left: 7.311677e-01	ci right 7.334100e-01	k: 439374	n:600000
KS ci ratio: 1.465122e-01	ci left: 1.104349e-03	ci right 1.280524e-03	k: 714	n:600000
WBP1   600000 perm   239 sec   (2513 perm/sec)   p_kst 1.190000e-03   p_cons 7.322900e-01   p_joint 2.033333e-03

Joint ci ratio: 1.109386e-01	ci left: 1.929279e-03	ci right 2.157459e-03	k: 1245	n:610000
Cons ci ratio: 3.035013e-03	ci left: 7.311328e-01	ci right 7.333568e-01	k: 446670	n:610000
KS ci ratio: 1.451980e-01	ci left: 1.106779e-03	ci right 1.281620e-03	k: 727	n:610000
WBP1   610000 perm   245 sec   (2490 perm/sec)   p_kst 1.191803e-03   p_cons 7.322459e-01   p_joint 2.040984e-03

Joint ci ratio: 7.949663e-02	ci left: 3.751114e-03	ci right 4.063227e-03	k: 2421	n:620000
Cons ci ratio: 3.010814e-03	ci left: 7.310926e-01	ci right 7.332987e-01	k: 453962	n:620000
KS ci ratio: 1.435313e-01	ci left: 1.115357e-03	ci right 1.289357e-03	k: 744	n:620000
WBP1   620000 perm   251 sec   (2466 perm/sec)   p_kst 1.200000e-03   p_cons 7.321968e-01   p_joint 3.904839e-03

Joint ci ratio: 7.161461e-02	ci left: 4.563776e-03	ci right 4.904295e-03	k: 2981	n:630000
Cons ci ratio: 2.987802e-03	ci left: 7.309728e-01	ci right 7.331616e-01	k: 461203	n:630000
KS ci ratio: 1.425778e-01	ci left: 1.112958e-03	ci right 1.285332e-03	k: 754	n:630000
WBP1   630000 perm   258 sec   (2437 perm/sec)   p_kst 1.196825e-03   p_cons 7.320683e-01   p_joint 4.731746e-03

Joint ci ratio: 7.097449e-02	ci left: 4.575339e-03	ci right 4.913543e-03	k: 3035	n:640000
Cons ci ratio: 2.964577e-03	ci left: 7.309537e-01	ci right 7.331254e-01	k: 468506	n:640000
KS ci ratio: 1.415505e-01	ci left: 1.112144e-03	ci right 1.283047e-03	k: 765	n:640000
WBP1   640000 perm   265 sec   (2416 perm/sec)   p_kst 1.195312e-03   p_cons 7.320406e-01   p_joint 4.742187e-03

Joint ci ratio: 7.037413e-02	ci left: 4.583536e-03	ci right 4.919363e-03	k: 3087	n:650000
Cons ci ratio: 2.941585e-03	ci left: 7.309754e-01	ci right 7.331303e-01	k: 475835	n:650000
KS ci ratio: 1.400945e-01	ci left: 1.118783e-03	ci right 1.288790e-03	k: 781	n:650000
WBP1   650000 perm   272 sec   (2394 perm/sec)   p_kst 1.201538e-03   p_cons 7.320538e-01   p_joint 4.749231e-03

Joint ci ratio: 7.208519e-02	ci left: 4.299770e-03	ci right 4.622785e-03	k: 2943	n:660000
Cons ci ratio: 2.918883e-03	ci left: 7.310283e-01	ci right 7.331667e-01	k: 483185	n:660000
KS ci ratio: 1.387696e-01	ci left: 1.123766e-03	ci right 1.292782e-03	k: 796	n:660000
WBP1   660000 perm   278 sec   (2372 perm/sec)   p_kst 1.206061e-03   p_cons 7.320985e-01   p_joint 4.459091e-03

Joint ci ratio: 1.052232e-01	ci left: 1.958368e-03	ci right 2.177317e-03	k: 1384	n:670000
Cons ci ratio: 2.897052e-03	ci left: 7.310318e-01	ci right 7.331542e-01	k: 490503	n:670000
KS ci ratio: 1.378218e-01	ci left: 1.122843e-03	ci right 1.290472e-03	k: 807	n:670000
WBP1   670000 perm   285 sec   (2350 perm/sec)   p_kst 1.204478e-03   p_cons 7.320940e-01   p_joint 2.065672e-03

Joint ci ratio: 6.884198e-02	ci left: 4.582175e-03	ci right 4.910301e-03	k: 3226	n:680000
Cons ci ratio: 2.875789e-03	ci left: 7.310236e-01	ci right 7.331303e-01	k: 497813	n:680000
KS ci ratio: 1.366429e-01	ci left: 1.126213e-03	ci right 1.292789e-03	k: 821	n:680000
WBP1   680000 perm   292 sec   (2330 perm/sec)   p_kst 1.207353e-03   p_cons 7.320779e-01   p_joint 4.744118e-03

Joint ci ratio: 6.834608e-02	ci left: 4.582715e-03	ci right 4.908421e-03	k: 3273	n:690000
Cons ci ratio: 2.854808e-03	ci left: 7.310403e-01	ci right 7.331317e-01	k: 505140	n:690000
KS ci ratio: 1.351704e-01	ci left: 1.135091e-03	ci right 1.301026e-03	k: 839	n:690000
WBP1   690000 perm   299 sec   (2309 perm/sec)   p_kst 1.215942e-03   p_cons 7.320870e-01   p_joint 4.743478e-03

Joint ci ratio: 9.627296e-02	ci left: 2.249075e-03	ci right 2.477932e-03	k: 1653	n:700000
Cons ci ratio: 2.987222e-03	ci left: 7.099208e-01	ci right 7.120460e-01	k: 497689	n:700000
KS ci ratio: 1.343731e-01	ci left: 1.132679e-03	ci right 1.297207e-03	k: 849	n:700000
WBP1   700000 perm   306 sec   (2290 perm/sec)   p_kst 1.212857e-03   p_cons 7.109843e-01   p_joint 2.361429e-03

Joint ci ratio: 1.017548e-01	ci left: 1.979751e-03	ci right 2.193358e-03	k: 1480	n:710000
Cons ci ratio: 2.966495e-03	ci left: 7.098750e-01	ci right 7.119853e-01	k: 504761	n:710000
KS ci ratio: 1.332027e-01	ci left: 1.137146e-03	ci right 1.300770e-03	k: 864	n:710000
WBP1   710000 perm   313 sec   (2270 perm/sec)   p_kst 1.216901e-03   p_cons 7.109310e-01   p_joint 2.084507e-03

Joint ci ratio: 1.010409e-01	ci left: 1.980681e-03	ci right 2.192801e-03	k: 1501	n:720000
Cons ci ratio: 2.946035e-03	ci left: 7.098527e-01	ci right 7.119484e-01	k: 511849	n:720000
KS ci ratio: 1.328200e-01	ci left: 1.128065e-03	ci right 1.289880e-03	k: 869	n:720000
WBP1   720000 perm   320 sec   (2252 perm/sec)   p_kst 1.206944e-03   p_cons 7.109014e-01   p_joint 2.084722e-03

Joint ci ratio: 9.413421e-02	ci left: 2.258279e-03	ci right 2.482686e-03	k: 1729	n:730000
Cons ci ratio: 2.925611e-03	ci left: 7.098846e-01	ci right 7.119658e-01	k: 518976	n:730000
KS ci ratio: 1.321386e-01	ci left: 1.124532e-03	ci right 1.284947e-03	k: 878	n:730000
WBP1   730000 perm   327 sec   (2234 perm/sec)   p_kst 1.202740e-03   p_cons 7.109260e-01   p_joint 2.368493e-03

Joint ci ratio: 9.351468e-02	ci left: 2.258113e-03	ci right 2.480946e-03	k: 1752	n:740000
Cons ci ratio: 2.905588e-03	ci left: 7.099184e-01	ci right 7.119854e-01	k: 526105	n:740000
KS ci ratio: 1.312458e-01	ci left: 1.125018e-03	ci right 1.284333e-03	k: 890	n:740000
WBP1   740000 perm   334 sec   (2215 perm/sec)   p_kst 1.202703e-03   p_cons 7.109527e-01   p_joint 2.367568e-03

Joint ci ratio: 9.924079e-02	ci left: 1.972950e-03	ci right 2.180259e-03	k: 1556	n:750000
Cons ci ratio: 2.886691e-03	ci left: 7.098485e-01	ci right 7.119019e-01	k: 533157	n:750000
KS ci ratio: 1.305882e-01	ci left: 1.121625e-03	ci right 1.279602e-03	k: 899	n:750000
WBP1   750000 perm   341 sec   (2198 perm/sec)   p_kst 1.198667e-03   p_cons 7.108760e-01   p_joint 2.074667e-03

Joint ci ratio: 9.860953e-02	ci left: 1.972655e-03	ci right 2.178538e-03	k: 1576	n:760000
Cons ci ratio: 2.867010e-03	ci left: 7.099452e-01	ci right 7.119848e-01	k: 540334	n:760000
KS ci ratio: 1.298688e-01	ci left: 1.119596e-03	ci right 1.276351e-03	k: 909	n:760000
WBP1   760000 perm   349 sec   (2180 perm/sec)   p_kst 1.196053e-03   p_cons 7.109658e-01   p_joint 2.073684e-03

Joint ci ratio: 9.802092e-02	ci left: 1.971105e-03	ci right 2.175527e-03	k: 1595	n:770000
Cons ci ratio: 2.847925e-03	ci left: 7.100108e-01	ci right 7.120370e-01	k: 547489	n:770000
KS ci ratio: 1.288811e-01	ci left: 1.122649e-03	ci right 1.278545e-03	k: 923	n:770000
WBP1   770000 perm   356 sec   (2164 perm/sec)   p_kst 1.198701e-03   p_cons 7.110247e-01   p_joint 2.071429e-03

Joint ci ratio: 9.738233e-02	ci left: 1.972100e-03	ci right 2.175217e-03	k: 1616	n:780000
Cons ci ratio: 2.829956e-03	ci left: 7.099669e-01	ci right 7.119802e-01	k: 554560	n:780000
KS ci ratio: 1.277792e-01	ci left: 1.128110e-03	ci right 1.283324e-03	k: 939	n:780000
WBP1   780000 perm   363 sec   (2147 perm/sec)   p_kst 1.203846e-03   p_cons 7.109744e-01   p_joint 2.071795e-03

Joint ci ratio: 9.663788e-02	ci left: 1.978014e-03	ci right 2.180095e-03	k: 1641	n:790000
Cons ci ratio: 2.812237e-03	ci left: 7.099369e-01	ci right 7.119375e-01	k: 561641	n:790000
KS ci ratio: 1.269046e-01	ci left: 1.129762e-03	ci right 1.284059e-03	k: 952	n:790000
WBP1   790000 perm   371 sec   (2129 perm/sec)   p_kst 1.205063e-03   p_cons 7.109380e-01   p_joint 2.077215e-03

Joint ci ratio: 9.588144e-02	ci left: 1.985007e-03	ci right 2.186126e-03	k: 1667	n:800000
Cons ci ratio: 2.793895e-03	ci left: 7.100478e-01	ci right 7.120356e-01	k: 568834	n:800000
KS ci ratio: 1.260477e-01	ci left: 1.131376e-03	ci right 1.284772e-03	k: 965	n:800000
WBP1   800000 perm   379 sec   (2111 perm/sec)   p_kst 1.206250e-03   p_cons 7.110425e-01   p_joint 2.083750e-03

Joint ci ratio: 9.531178e-02	ci left: 1.984602e-03	ci right 2.184418e-03	k: 1687	n:810000
Cons ci ratio: 2.777174e-03	ci left: 7.099682e-01	ci right 7.119439e-01	k: 575875	n:810000
KS ci ratio: 1.251440e-01	ci left: 1.134149e-03	ci right 1.286738e-03	k: 979	n:810000
WBP1   810000 perm   387 sec   (2094 perm/sec)   p_kst 1.208642e-03   p_cons 7.109568e-01   p_joint 2.082716e-03

Joint ci ratio: 9.455818e-02	ci left: 1.992545e-03	ci right 2.191487e-03	k: 1714	n:820000
Cons ci ratio: 2.760471e-03	ci left: 7.099321e-01	ci right 7.118957e-01	k: 582950	n:820000
KS ci ratio: 1.245735e-01	ci left: 1.130951e-03	ci right 1.282364e-03	k: 988	n:820000
WBP1   820000 perm   395 sec   (2076 perm/sec)   p_kst 1.204878e-03   p_cons 7.109146e-01   p_joint 2.090244e-03

Joint ci ratio: 9.403881e-02	ci left: 1.990890e-03	ci right 2.188514e-03	k: 1733	n:830000
Cons ci ratio: 2.743712e-03	ci left: 7.099499e-01	ci right 7.119016e-01	k: 590069	n:830000
KS ci ratio: 1.242603e-01	ci left: 1.123161e-03	ci right 1.273126e-03	k: 993	n:830000
WBP1   830000 perm   403 sec   (2060 perm/sec)   p_kst 1.196386e-03   p_cons 7.109265e-01   p_joint 2.087952e-03

Joint ci ratio: 9.368871e-02	ci left: 1.982301e-03	ci right 2.178301e-03	k: 1746	n:840000
Cons ci ratio: 2.727460e-03	ci left: 7.099364e-01	ci right 7.118765e-01	k: 597162	n:840000
KS ci ratio: 1.237636e-01	ci left: 1.119019e-03	ci right 1.267789e-03	k: 1001	n:840000
WBP1   840000 perm   411 sec   (2043 perm/sec)   p_kst 1.191667e-03   p_cons 7.109071e-01   p_joint 2.078571e-03

Joint ci ratio: 9.315703e-02	ci left: 1.981960e-03	ci right 2.176753e-03	k: 1766	n:850000
Cons ci ratio: 2.711587e-03	ci left: 7.099090e-01	ci right 7.118378e-01	k: 604243	n:850000
KS ci ratio: 1.229683e-01	ci left: 1.120676e-03	ci right 1.268639e-03	k: 1014	n:850000
WBP1   850000 perm   419 sec   (2027 perm/sec)   p_kst 1.192941e-03   p_cons 7.108741e-01   p_joint 2.077647e-03

Joint ci ratio: 9.253059e-02	ci left: 1.986173e-03	ci right 2.179996e-03	k: 1790	n:860000
Cons ci ratio: 2.696010e-03	ci left: 7.098789e-01	ci right 7.117964e-01	k: 611321	n:860000
KS ci ratio: 1.220102e-01	ci left: 1.125680e-03	ci right 1.273062e-03	k: 1030	n:860000
WBP1   860000 perm   428 sec   (2010 perm/sec)   p_kst 1.197674e-03   p_cons 7.108384e-01   p_joint 2.081395e-03

Joint ci ratio: 9.186591e-02	ci left: 1.992540e-03	ci right 2.185512e-03	k: 1816	n:870000
Cons ci ratio: 2.680144e-03	ci left: 7.099346e-01	ci right 7.118410e-01	k: 618473	n:870000
KS ci ratio: 1.214229e-01	ci left: 1.123885e-03	ci right 1.270273e-03	k: 1040	n:870000
WBP1   870000 perm   436 sec   (1994 perm/sec)   p_kst 1.195402e-03   p_cons 7.108885e-01   p_joint 2.087356e-03

Joint ci ratio: 9.146434e-02	ci left: 1.987662e-03	ci right 2.179276e-03	k: 1832	n:880000
Cons ci ratio: 2.665203e-03	ci left: 7.098890e-01	ci right 7.117846e-01	k: 625537	n:880000
KS ci ratio: 1.206717e-01	ci left: 1.125439e-03	ci right 1.271058e-03	k: 1053	n:880000
WBP1   880000 perm   445 sec   (1979 perm/sec)   p_kst 1.196591e-03   p_cons 7.108375e-01   p_joint 2.081818e-03

Joint ci ratio: 9.077330e-02	ci left: 1.996073e-03	ci right 2.186966e-03	k: 1860	n:890000
Cons ci ratio: 2.649908e-03	ci left: 7.099378e-01	ci right 7.118226e-01	k: 632684	n:890000
KS ci ratio: 1.198780e-01	ci left: 1.128051e-03	ci right 1.272980e-03	k: 1067	n:890000
WBP1   890000 perm   453 sec   (1964 perm/sec)   p_kst 1.198876e-03   p_cons 7.108809e-01   p_joint 2.089888e-03

Joint ci ratio: 6.720952e-02	ci left: 3.638968e-03	ci right 3.893131e-03	k: 3388	n:900000
Cons ci ratio: 2.635172e-03	ci left: 7.099388e-01	ci right 7.118132e-01	k: 639789	n:900000
KS ci ratio: 1.191549e-01	ci left: 1.129530e-03	ci right 1.273712e-03	k: 1080	n:900000
WBP1   900000 perm   462 sec   (1950 perm/sec)   p_kst 1.200000e-03   p_cons 7.108767e-01   p_joint 3.764444e-03

Joint ci ratio: 6.684564e-02	ci left: 3.638958e-03	ci right 3.891690e-03	k: 3425	n:910000
Cons ci ratio: 2.621079e-03	ci left: 7.098771e-01	ci right 7.117413e-01	k: 646837	n:910000
KS ci ratio: 1.183906e-01	ci left: 1.132045e-03	ci right 1.275556e-03	k: 1094	n:910000
WBP1   910000 perm   470 sec   (1935 perm/sec)   p_kst 1.202198e-03   p_cons 7.108099e-01   p_joint 3.763736e-03

Joint ci ratio: 6.637227e-02	ci left: 3.651778e-03	ci right 3.903536e-03	k: 3474	n:920000
Cons ci ratio: 2.607030e-03	ci left: 7.098451e-01	ci right 7.116992e-01	k: 653911	n:920000
KS ci ratio: 1.176940e-01	ci left: 1.133453e-03	ci right 1.276239e-03	k: 1107	n:920000
WBP1   920000 perm   479 sec   (1920 perm/sec)   p_kst 1.203261e-03   p_cons 7.107728e-01   p_joint 3.776087e-03

Joint ci ratio: 6.606897e-02	ci left: 3.646350e-03	ci right 3.896541e-03	k: 3506	n:930000
Cons ci ratio: 2.593164e-03	ci left: 7.098203e-01	ci right 7.116644e-01	k: 660991	n:930000
KS ci ratio: 1.174826e-01	ci left: 1.125440e-03	ci right 1.266944e-03	k: 1111	n:930000
WBP1   930000 perm   488 sec   (1906 perm/sec)   p_kst 1.194624e-03   p_cons 7.107430e-01   p_joint 3.769892e-03

Joint ci ratio: 6.572321e-02	ci left: 3.646273e-03	ci right 3.895099e-03	k: 3543	n:940000
Cons ci ratio: 2.579577e-03	ci left: 7.097864e-01	ci right 7.116208e-01	k: 668062	n:940000
KS ci ratio: 1.168018e-01	ci left: 1.126892e-03	ci right 1.267700e-03	k: 1124	n:940000
WBP1   940000 perm   497 sec   (1892 perm/sec)   p_kst 1.195745e-03   p_cons 7.107043e-01   p_joint 3.769149e-03

Joint ci ratio: 6.535534e-02	ci left: 3.649306e-03	ci right 3.896892e-03	k: 3583	n:950000
Cons ci ratio: 2.565938e-03	ci left: 7.097955e-01	ci right 7.116201e-01	k: 675173	n:950000
KS ci ratio: 1.161838e-01	ci left: 1.127293e-03	ci right 1.267356e-03	k: 1136	n:950000
WBP1   950000 perm   506 sec   (1877 perm/sec)   p_kst 1.195789e-03   p_cons 7.107084e-01   p_joint 3.771579e-03

Joint ci ratio: 8.723526e-02	ci left: 2.007374e-03	ci right 2.191484e-03	k: 2014	n:960000
Cons ci ratio: 2.552417e-03	ci left: 7.098199e-01	ci right 7.116350e-01	k: 682299	n:960000
KS ci ratio: 1.156763e-01	ci left: 1.125665e-03	ci right 1.264873e-03	k: 1146	n:960000
WBP1   960000 perm   515 sec   (1864 perm/sec)   p_kst 1.193750e-03   p_cons 7.107281e-01   p_joint 2.097917e-03

Joint ci ratio: 8.693409e-02	ci left: 2.000798e-03	ci right 2.183639e-03	k: 2028	n:970000
Cons ci ratio: 2.539508e-03	ci left: 7.097790e-01	ci right 7.115847e-01	k: 689362	n:970000
KS ci ratio: 1.152253e-01	ci left: 1.123071e-03	ci right 1.261379e-03	k: 1155	n:970000
WBP1   970000 perm   524 sec   (1851 perm/sec)   p_kst 1.190722e-03   p_cons 7.106825e-01   p_joint 2.090722e-03

Joint ci ratio: 8.655116e-02	ci left: 1.998350e-03	ci right 2.180123e-03	k: 2046	n:980000
Cons ci ratio: 2.526203e-03	ci left: 7.098348e-01	ci right 7.116313e-01	k: 696519	n:980000
KS ci ratio: 1.149774e-01	ci left: 1.116566e-03	ci right 1.253757e-03	k: 1160	n:980000
WBP1   980000 perm   533 sec   (1838 perm/sec)   p_kst 1.183673e-03   p_cons 7.107337e-01   p_joint 2.087755e-03

Joint ci ratio: 8.602725e-02	ci left: 2.002873e-03	ci right 2.183899e-03	k: 2071	n:990000
Cons ci ratio: 2.513581e-03	ci left: 7.098117e-01	ci right 7.115991e-01	k: 703599	n:990000
KS ci ratio: 1.144366e-01	ci left: 1.116080e-03	ci right 1.252522e-03	k: 1171	n:990000
WBP1   990000 perm   542 sec   (1825 perm/sec)   p_kst 1.182828e-03   p_cons 7.107061e-01   p_joint 2.091919e-03

Joint ci ratio: 8.551274e-02	ci left: 2.007308e-03	ci right 2.187596e-03	k: 2096	n:1000000
Cons ci ratio: 2.501006e-03	ci left: 7.098122e-01	ci right 7.115906e-01	k: 710702	n:1000000
KS ci ratio: 1.136631e-01	ci left: 1.120462e-03	ci right 1.256453e-03	k: 1187	n:1000000
WBP1   1000000 perm   552 sec   (1813 perm/sec)   p_kst 1.187000e-03   p_cons 7.107020e-01   p_joint 2.096000e-03

Joint ci ratio: 8.512804e-02	ci left: 2.005844e-03	ci right 2.185150e-03	k: 2115	n:1010000
Cons ci ratio: 2.488289e-03	ci left: 7.098671e-01	ci right 7.116366e-01	k: 717860	n:1010000
KS ci ratio: 1.131406e-01	ci left: 1.119951e-03	ci right 1.255213e-03	k: 1198	n:1010000
WBP1   1010000 perm   561 sec   (1800 perm/sec)   p_kst 1.186139e-03   p_cons 7.107525e-01   p_joint 2.094059e-03

Joint ci ratio: 8.478829e-02	ci left: 2.002491e-03	ci right 2.180747e-03	k: 2132	n:1020000
Cons ci ratio: 2.475964e-03	ci left: 7.098876e-01	ci right 7.116484e-01	k: 724984	n:1020000
KS ci ratio: 1.127652e-01	ci left: 1.116592e-03	ci right 1.250972e-03	k: 1206	n:1020000
WBP1   1020000 perm   570 sec   (1788 perm/sec)   p_kst 1.182353e-03   p_cons 7.107686e-01   p_joint 2.090196e-03

Joint ci ratio: 8.427600e-02	ci left: 2.007759e-03	ci right 2.185351e-03	k: 2158	n:1030000
Cons ci ratio: 2.464001e-03	ci left: 7.098777e-01	ci right 7.116299e-01	k: 732077	n:1030000
KS ci ratio: 1.120708e-01	ci left: 1.119905e-03	ci right 1.253799e-03	k: 1221	n:1030000
WBP1   1030000 perm   580 sec   (1776 perm/sec)   p_kst 1.185437e-03   p_cons 7.107544e-01   p_joint 2.095146e-03

Joint ci ratio: 8.384983e-02	ci left: 2.009163e-03	ci right 2.185936e-03	k: 2180	n:1040000
Cons ci ratio: 2.451957e-03	ci left: 7.099102e-01	ci right 7.116540e-01	k: 739214	n:1040000
KS ci ratio: 1.114342e-01	ci left: 1.122222e-03	ci right 1.255581e-03	k: 1235	n:1040000
WBP1   1040000 perm   589 sec   (1765 perm/sec)   p_kst 1.187500e-03   p_cons 7.107827e-01   p_joint 2.096154e-03

Joint ci ratio: 8.348704e-02	ci left: 2.007744e-03	ci right 2.183592e-03	k: 2199	n:1050000
Cons ci ratio: 2.440541e-03	ci left: 7.098660e-01	ci right 7.116015e-01	k: 746271	n:1050000
KS ci ratio: 1.110308e-01	ci left: 1.119868e-03	ci right 1.252433e-03	k: 1244	n:1050000
WBP1   1050000 perm   599 sec   (1753 perm/sec)   p_kst 1.184762e-03   p_cons 7.107343e-01   p_joint 2.094286e-03

Joint ci ratio: 8.305394e-02	ci left: 2.010050e-03	ci right 2.185142e-03	k: 2222	n:1060000
Cons ci ratio: 2.429260e-03	ci left: 7.098263e-01	ci right 7.115537e-01	k: 753332	n:1060000
KS ci ratio: 1.101928e-01	ci left: 1.126732e-03	ci right 1.259037e-03	k: 1263	n:1060000
WBP1   1060000 perm   609 sec   (1742 perm/sec)   p_kst 1.191509e-03   p_cons 7.106906e-01   p_joint 2.096226e-03

Joint ci ratio: 8.255388e-02	ci left: 2.015976e-03	ci right 2.190475e-03	k: 2249	n:1070000
Cons ci ratio: 2.417705e-03	ci left: 7.098604e-01	ci right 7.115796e-01	k: 760471	n:1070000
KS ci ratio: 1.095875e-01	ci left: 1.128926e-03	ci right 1.260714e-03	k: 1277	n:1070000
WBP1   1070000 perm   618 sec   (1730 perm/sec)   p_kst 1.193458e-03   p_cons 7.107206e-01   p_joint 2.101869e-03

Joint ci ratio: 8.222575e-02	ci left: 2.013632e-03	ci right 2.187203e-03	k: 2267	n:1080000
Cons ci ratio: 2.406682e-03	ci left: 7.098308e-01	ci right 7.115421e-01	k: 767542	n:1080000
KS ci ratio: 1.091613e-01	ci left: 1.127479e-03	ci right 1.258553e-03	k: 1287	n:1080000
WBP1   1080000 perm   628 sec   (1719 perm/sec)   p_kst 1.191667e-03   p_cons 7.106870e-01   p_joint 2.099074e-03

Joint ci ratio: 8.191946e-02	ci left: 2.010435e-03	ci right 2.183054e-03	k: 2284	n:1090000
Cons ci ratio: 2.395467e-03	ci left: 7.098606e-01	ci right 7.115640e-01	k: 774677	n:1090000
KS ci ratio: 1.087821e-01	ci left: 1.125167e-03	ci right 1.255489e-03	k: 1296	n:1090000
WBP1   1090000 perm   638 sec   (1708 perm/sec)   p_kst 1.188991e-03   p_cons 7.107128e-01   p_joint 2.095413e-03

Joint ci ratio: 8.362444e-02	ci left: 1.910249e-03	ci right 2.077846e-03	k: 2192	n:1100000
Cons ci ratio: 2.384565e-03	ci left: 7.098625e-01	ci right 7.115582e-01	k: 781782	n:1100000
KS ci ratio: 1.084067e-01	ci left: 1.122898e-03	ci right 1.252479e-03	k: 1305	n:1100000
WBP1   1100000 perm   648 sec   (1697 perm/sec)   p_kst 1.186364e-03   p_cons 7.107109e-01   p_joint 1.992727e-03

Joint ci ratio: 8.330229e-02	ci left: 1.908035e-03	ci right 2.074761e-03	k: 2209	n:1110000
Cons ci ratio: 2.373716e-03	ci left: 7.098807e-01	ci right 7.115686e-01	k: 788905	n:1110000
KS ci ratio: 1.079942e-01	ci left: 1.121546e-03	ci right 1.250448e-03	k: 1315	n:1110000
WBP1   1110000 perm   659 sec   (1686 perm/sec)   p_kst 1.184685e-03   p_cons 7.107252e-01   p_joint 1.990090e-03

Joint ci ratio: 8.300252e-02	ci left: 1.904987e-03	ci right 2.070819e-03	k: 2225	n:1120000
Cons ci ratio: 2.363071e-03	ci left: 7.098887e-01	ci right 7.115691e-01	k: 796017	n:1120000
KS ci ratio: 1.075051e-01	ci left: 1.121958e-03	ci right 1.250287e-03	k: 1327	n:1120000
WBP1   1120000 perm   669 sec   (1675 perm/sec)   p_kst 1.184821e-03   p_cons 7.107295e-01   p_joint 1.986607e-03

Joint ci ratio: 8.263213e-02	ci left: 1.905462e-03	ci right 2.070559e-03	k: 2245	n:1130000
Cons ci ratio: 2.352512e-03	ci left: 7.099064e-01	ci right 7.115793e-01	k: 803140	n:1130000
KS ci ratio: 1.070627e-01	ci left: 1.121503e-03	ci right 1.249218e-03	k: 1338	n:1130000
WBP1   1130000 perm   679 sec   (1665 perm/sec)   p_kst 1.184071e-03   p_cons 7.107434e-01   p_joint 1.986726e-03

Joint ci ratio: 8.030203e-02	ci left: 2.002182e-03	ci right 2.170539e-03	k: 2377	n:1140000
Cons ci ratio: 2.341684e-03	ci left: 7.099957e-01	ci right 7.116611e-01	k: 810345	n:1140000
KS ci ratio: 1.063892e-01	ci left: 1.126179e-03	ci right 1.253570e-03	k: 1355	n:1140000
WBP1   1140000 perm   689 sec   (1655 perm/sec)   p_kst 1.188596e-03   p_cons 7.108289e-01   p_joint 2.085088e-03

Joint ci ratio: 7.998320e-02	ci left: 2.000962e-03	ci right 2.168518e-03	k: 2396	n:1150000
Cons ci ratio: 2.331896e-03	ci left: 7.099260e-01	ci right 7.115842e-01	k: 817369	n:1150000
KS ci ratio: 1.060769e-01	ci left: 1.123158e-03	ci right 1.249811e-03	k: 1363	n:1150000
WBP1   1150000 perm   699 sec   (1645 perm/sec)   p_kst 1.185217e-03   p_cons 7.107557e-01   p_joint 2.083478e-03

Joint ci ratio: 7.978405e-02	ci left: 1.993850e-03	ci right 2.160376e-03	k: 2408	n:1160000
Cons ci ratio: 2.321539e-03	ci left: 7.099800e-01	ci right 7.116310e-01	k: 824535	n:1160000
KS ci ratio: 1.058447e-01	ci left: 1.118511e-03	ci right 1.244346e-03	k: 1369	n:1160000
WBP1   1160000 perm   709 sec   (1635 perm/sec)   p_kst 1.180172e-03   p_cons 7.108060e-01   p_joint 2.075862e-03

Joint ci ratio: 7.938945e-02	ci left: 1.996914e-03	ci right 2.162832e-03	k: 2432	n:1170000
Cons ci ratio: 2.311462e-03	ci left: 7.100075e-01	ci right 7.116513e-01	k: 831671	n:1170000
KS ci ratio: 1.054988e-01	ci left: 1.116440e-03	ci right 1.241606e-03	k: 1378	n:1170000
WBP1   1170000 perm   720 sec   (1625 perm/sec)   p_kst 1.177778e-03   p_cons 7.108299e-01   p_joint 2.078632e-03

Joint ci ratio: 7.911367e-02	ci left: 1.994112e-03	ci right 2.159195e-03	k: 2449	n:1180000
Cons ci ratio: 2.301587e-03	ci left: 7.100217e-01	ci right 7.116586e-01	k: 838792	n:1180000
KS ci ratio: 1.051564e-01	ci left: 1.114405e-03	ci right 1.238912e-03	k: 1387	n:1180000
WBP1   1180000 perm   731 sec   (1615 perm/sec)   p_kst 1.175424e-03   p_cons 7.108407e-01   p_joint 2.075424e-03

Joint ci ratio: 7.869702e-02	ci left: 1.998772e-03	ci right 2.163330e-03	k: 2475	n:1190000
Cons ci ratio: 2.292090e-03	ci left: 7.099903e-01	ci right 7.116204e-01	k: 845859	n:1190000
KS ci ratio: 1.047797e-01	ci left: 1.113223e-03	ci right 1.237125e-03	k: 1397	n:1190000
WBP1   1190000 perm   741 sec   (1606 perm/sec)   p_kst 1.173950e-03   p_cons 7.108059e-01   p_joint 2.079832e-03

Joint ci ratio: 7.842836e-02	ci left: 1.996004e-03	ci right 2.159747e-03	k: 2492	n:1200000
Cons ci ratio: 2.282969e-03	ci left: 7.099128e-01	ci right 7.115362e-01	k: 852870	n:1200000
KS ci ratio: 1.043699e-01	ci left: 1.112873e-03	ci right 1.236222e-03	k: 1408	n:1200000
WBP1   1200000 perm   752 sec   (1597 perm/sec)   p_kst 1.173333e-03   p_cons 7.107250e-01   p_joint 2.076667e-03

Joint ci ratio: 7.819366e-02	ci left: 1.991662e-03	ci right 2.154538e-03	k: 2507	n:1210000
Cons ci ratio: 2.273754e-03	ci left: 7.098730e-01	ci right 7.114897e-01	k: 859925	n:1210000
KS ci ratio: 1.040016e-01	ci left: 1.111724e-03	ci right 1.234485e-03	k: 1418	n:1210000
WBP1   1210000 perm   762 sec   (1588 perm/sec)   p_kst 1.171901e-03   p_cons 7.106818e-01   p_joint 2.071901e-03

Joint ci ratio: 7.954039e-02	ci left: 1.907839e-03	ci right 2.066671e-03	k: 2423	n:1220000
Cons ci ratio: 2.264582e-03	ci left: 7.098461e-01	ci right 7.114562e-01	k: 866995	n:1220000
KS ci ratio: 1.033479e-01	ci left: 1.116984e-03	ci right 1.239503e-03	k: 1436	n:1220000
WBP1   1220000 perm   772 sec   (1579 perm/sec)   p_kst 1.177049e-03   p_cons 7.106516e-01   p_joint 1.986066e-03

Joint ci ratio: 7.756227e-02	ci left: 1.991962e-03	ci right 2.153487e-03	k: 2548	n:1230000
Cons ci ratio: 2.255316e-03	ci left: 7.098571e-01	ci right 7.114606e-01	k: 874111	n:1230000
KS ci ratio: 1.029902e-01	ci left: 1.115823e-03	ci right 1.237765e-03	k: 1446	n:1230000
WBP1   1230000 perm   783 sec   (1570 perm/sec)   p_kst 1.175610e-03   p_cons 7.106593e-01   p_joint 2.071545e-03

Joint ci ratio: 7.902076e-02	ci left: 1.902362e-03	ci right 2.059656e-03	k: 2455	n:1240000
Cons ci ratio: 2.246320e-03	ci left: 7.098389e-01	ci right 7.114360e-01	k: 881191	n:1240000
KS ci ratio: 1.027069e-01	ci left: 1.113110e-03	ci right 1.234401e-03	k: 1454	n:1240000
WBP1   1240000 perm   794 sec   (1561 perm/sec)   p_kst 1.172581e-03   p_cons 7.106379e-01   p_joint 1.979839e-03

Joint ci ratio: 7.881267e-02	ci left: 1.897338e-03	ci right 2.053784e-03	k: 2468	n:1250000
Cons ci ratio: 2.237488e-03	ci left: 7.098105e-01	ci right 7.114013e-01	k: 888258	n:1250000
KS ci ratio: 1.024609e-01	ci left: 1.109661e-03	ci right 1.230269e-03	k: 1461	n:1250000
WBP1   1250000 perm   806 sec   (1551 perm/sec)   p_kst 1.168800e-03   p_cons 7.106064e-01   p_joint 1.974400e-03

Joint ci ratio: 7.843225e-02	ci left: 1.900953e-03	ci right 2.056906e-03	k: 2492	n:1260000
Cons ci ratio: 2.228506e-03	ci left: 7.098295e-01	ci right 7.114139e-01	k: 895384	n:1260000
KS ci ratio: 1.020429e-01	ci left: 1.110135e-03	ci right 1.230273e-03	k: 1473	n:1260000
WBP1   1260000 perm   817 sec   (1542 perm/sec)   p_kst 1.169048e-03   p_cons 7.106222e-01   p_joint 1.977778e-03

Joint ci ratio: 7.815068e-02	ci left: 1.899880e-03	ci right 2.055161e-03	k: 2510	n:1270000
Cons ci ratio: 2.219240e-03	ci left: 7.099208e-01	ci right 7.114988e-01	k: 902602	n:1270000
KS ci ratio: 1.016643e-01	ci left: 1.109834e-03	ci right 1.229467e-03	k: 1484	n:1270000
WBP1   1270000 perm   829 sec   (1533 perm/sec)   p_kst 1.168504e-03   p_cons 7.107102e-01   p_joint 1.976378e-03

Joint ci ratio: 7.776436e-02	ci left: 1.904188e-03	ci right 2.059017e-03	k: 2535	n:1280000
Cons ci ratio: 2.210445e-03	ci left: 7.099441e-01	ci right 7.115159e-01	k: 909735	n:1280000
KS ci ratio: 1.010535e-01	ci left: 1.114870e-03	ci right 1.234281e-03	k: 1502	n:1280000
WBP1   1280000 perm   840 sec   (1524 perm/sec)   p_kst 1.173438e-03   p_cons 7.107305e-01   p_joint 1.980469e-03

Joint ci ratio: 7.748990e-02	ci left: 1.903110e-03	ci right 2.057280e-03	k: 2553	n:1290000
Cons ci ratio: 2.201958e-03	ci left: 7.099291e-01	ci right 7.114948e-01	k: 916819	n:1290000
KS ci ratio: 1.007524e-01	ci left: 1.113028e-03	ci right 1.231866e-03	k: 1511	n:1290000
WBP1   1290000 perm   852 sec   (1515 perm/sec)   p_kst 1.171318e-03   p_cons 7.107124e-01   p_joint 1.979070e-03

Joint ci ratio: 7.720329e-02	ci left: 1.902803e-03	ci right 2.056352e-03	k: 2572	n:1300000
Cons ci ratio: 2.193732e-03	ci left: 7.098835e-01	ci right 7.114432e-01	k: 923863	n:1300000
KS ci ratio: 1.005202e-01	ci left: 1.109715e-03	ci right 1.227910e-03	k: 1518	n:1300000
WBP1   1300000 perm   863 sec   (1506 perm/sec)   p_kst 1.167692e-03   p_cons 7.106638e-01   p_joint 1.978462e-03

Joint ci ratio: 7.684560e-02	ci left: 1.906246e-03	ci right 2.059328e-03	k: 2596	n:1310000
Cons ci ratio: 2.185398e-03	ci left: 7.098761e-01	ci right 7.114299e-01	k: 930956	n:1310000
KS ci ratio: 1.000927e-01	ci left: 1.110919e-03	ci right 1.228709e-03	k: 1531	n:1310000
WBP1   1310000 perm   875 sec   (1497 perm/sec)   p_kst 1.168702e-03   p_cons 7.106534e-01   p_joint 1.981679e-03

Joint ci ratio: 7.658072e-02	ci left: 1.905179e-03	ci right 2.057625e-03	k: 2614	n:1320000
Cons ci ratio: 2.177050e-03	ci left: 7.098892e-01	ci right 7.114371e-01	k: 938076	n:1320000
KS ci ratio: 9.976769e-02	ci left: 1.109889e-03	ci right 1.227166e-03	k: 1541	n:1320000
WBP1   1320000 perm   887 sec   (1488 perm/sec)   p_kst 1.167424e-03   p_cons 7.106636e-01   p_joint 1.980303e-03

Outputting figure to mutsig2_images.part000000000190/WBP1.2_826_1320000_0.0011674_0.71066_0.0019803.png
                gene_name: WBP1
               theta_stop: 0.100 
                    nperm: 1320000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 70 percent done.
WBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
KS ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
WBP4   10000 perm   2 sec   (6393 perm/sec)   p_kst 3.050000e-02   p_cons 6.960000e-02   p_joint 1.130000e-02

Joint ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
Cons ci ratio: 1.024545e-01	ci left: 6.469544e-02	ci right 7.173072e-02	k: 1363	n:20000
KS ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
WBP4   20000 perm   4 sec   (5617 perm/sec)   p_kst 2.985000e-02   p_cons 6.815000e-02   p_joint 1.560000e-02

Joint ci ratio: 4.700416e-02	ci left: 1.837576e-01	ci right 1.926362e-01	k: 5645	n:30000
Cons ci ratio: 8.306762e-02	ci left: 6.622250e-02	ci right 7.199462e-02	k: 2072	n:30000
KS ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
WBP4   30000 perm   6 sec   (5327 perm/sec)   p_kst 3.020000e-02   p_cons 6.906667e-02   p_joint 1.881667e-01

Joint ci ratio: 1.919577e-02	ci left: 5.054880e-01	ci right 5.153104e-01	k: 20416	n:40000
Cons ci ratio: 7.191098e-02	ci left: 6.665796e-02	ci right 7.165481e-02	k: 2765	n:40000
KS ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
WBP4   40000 perm   8 sec   (5144 perm/sec)   p_kst 2.995000e-02   p_cons 6.912500e-02   p_joint 5.104000e-01

Joint ci ratio: 2.253304e-02	ci left: 3.727892e-01	ci right 3.813051e-01	k: 18852	n:50000
Cons ci ratio: 6.478854e-02	ci left: 6.600550e-02	ci right 7.044479e-02	k: 3410	n:50000
KS ci ratio: 9.978618e-02	ci left: 2.844404e-02	ci right 3.145086e-02	k: 1496	n:50000
WBP4   50000 perm   10 sec   (4997 perm/sec)   p_kst 2.992000e-02   p_cons 6.820000e-02   p_joint 3.770400e-01

Outputting figure to mutsig2_images.part000000000190/WBP4.2_1171_50000_0.02992_0.0682_0.37704.png
                gene_name: WBP4
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 72 percent done.
WBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
KS ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
WBP5   10000 perm   1 sec   (7320 perm/sec)   p_kst 5.879000e-01   p_cons 3.167000e-01   p_joint 3.955000e-01

Outputting figure to mutsig2_images.part000000000190/WBP5.2_319_10000_0.5879_0.3167_0.3955.png
                gene_name: WBP5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 73 percent done.
WDFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.285505e-02	ci left: 2.162545e-01	ci right 2.327063e-01	k: 2244	n:10000
Cons ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
KS ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
WDFY1   10000 perm   2 sec   (6321 perm/sec)   p_kst 6.282000e-01   p_cons 1.820000e-02   p_joint 2.244000e-01

Joint ci ratio: 6.992313e-02	ci left: 1.310312e-01	ci right 1.405750e-01	k: 2715	n:20000
Cons ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
KS ci ratio: 2.111166e-02	ci left: 6.261256e-01	ci right 6.395357e-01	k: 12657	n:20000
WDFY1   20000 perm   4 sec   (5552 perm/sec)   p_kst 6.328500e-01   p_cons 1.935000e-02   p_joint 1.357500e-01

Joint ci ratio: 6.532438e-02	ci left: 1.036550e-01	ci right 1.106879e-01	k: 3214	n:30000
Cons ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
KS ci ratio: 1.722859e-02	ci left: 6.276169e-01	ci right 6.385573e-01	k: 18993	n:30000
WDFY1   30000 perm   6 sec   (5190 perm/sec)   p_kst 6.331000e-01   p_cons 1.926667e-02   p_joint 1.071333e-01

Joint ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
Cons ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
KS ci ratio: 1.498722e-02	ci left: 6.262744e-01	ci right 6.357565e-01	k: 25241	n:40000
WDFY1   40000 perm   8 sec   (5060 perm/sec)   p_kst 6.310250e-01   p_cons 1.952500e-02   p_joint 2.982500e-02

Joint ci ratio: 1.006912e-01	ci left: 2.793671e-02	ci right 3.091826e-02	k: 1470	n:50000
Cons ci ratio: 1.244395e-01	ci left: 1.824778e-02	ci right 2.068846e-02	k: 972	n:50000
KS ci ratio: 1.338619e-02	ci left: 6.274346e-01	ci right 6.359102e-01	k: 31584	n:50000
WDFY1   50000 perm   10 sec   (4948 perm/sec)   p_kst 6.316800e-01   p_cons 1.944000e-02   p_joint 2.940000e-02

Joint ci ratio: 8.764111e-02	ci left: 3.085075e-02	ci right 3.369473e-02	k: 1935	n:60000
Cons ci ratio: 1.130359e-01	ci left: 1.853818e-02	ci right 2.077529e-02	k: 1178	n:60000
KS ci ratio: 1.222200e-02	ci left: 6.277257e-01	ci right 6.354616e-01	k: 37896	n:60000
WDFY1   60000 perm   13 sec   (4771 perm/sec)   p_kst 6.316000e-01   p_cons 1.963333e-02   p_joint 3.225000e-02

Joint ci ratio: 8.453891e-02	ci left: 2.853877e-02	ci right 3.107183e-02	k: 2085	n:70000
Cons ci ratio: 1.042842e-01	ci left: 1.875294e-02	ci right 2.083000e-02	k: 1384	n:70000
KS ci ratio: 1.131436e-02	ci left: 6.280570e-01	ci right 6.352178e-01	k: 44215	n:70000
WDFY1   70000 perm   15 sec   (4685 perm/sec)   p_kst 6.316429e-01   p_cons 1.977143e-02   p_joint 2.978571e-02

Joint ci ratio: 7.931935e-02	ci left: 2.844867e-02	ci right 3.081061e-02	k: 2369	n:80000
Cons ci ratio: 9.805131e-02	ci left: 1.862622e-02	ci right 2.055884e-02	k: 1566	n:80000
KS ci ratio: 1.058973e-02	ci left: 6.280210e-01	ci right 6.347195e-01	k: 50510	n:80000
WDFY1   80000 perm   17 sec   (4605 perm/sec)   p_kst 6.313750e-01   p_cons 1.957500e-02   p_joint 2.961250e-02

Outputting figure to mutsig2_images.part000000000190/WDFY1.2_1281_80000_0.63138_0.019575_0.029612.png
                gene_name: WDFY1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 75 percent done.
WDFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
Cons ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
KS ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
WDFY2   10000 perm   2 sec   (6046 perm/sec)   p_kst 5.189000e-01   p_cons 4.731000e-01   p_joint 7.279000e-01

Outputting figure to mutsig2_images.part000000000190/WDFY2.2_1251_10000_0.5189_0.4731_0.7279.png
                gene_name: WDFY2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 77 percent done.
WDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
KS ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
WDR1   10000 perm   2 sec   (6292 perm/sec)   p_kst 9.726000e-01   p_cons 7.360000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR1.2_1881_10000_0.9726_0.736_1.png
                gene_name: WDR1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
WDR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.980685e-02	ci left: 6.240687e-01	ci right 6.430535e-01	k: 6336	n:10000
KS ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
WDR11   10000 perm   2 sec   (5307 perm/sec)   p_kst 5.228000e-01   p_cons 6.336000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR11.2_3791_10000_0.5228_0.6336_1.png
                gene_name: WDR11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
WDR33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
KS ci ratio: 4.536454e-02	ci left: 4.176764e-01	ci right 4.371659e-01	k: 4274	n:10000
WDR33   10000 perm   2 sec   (5172 perm/sec)   p_kst 4.274000e-01   p_cons 2.065000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR33.2_4504_10000_0.4274_0.2065_1.png
                gene_name: WDR33
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
WDR37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
WDR37   10000 perm   2 sec   (6234 perm/sec)   p_kst 1.380000e-01   p_cons 2.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR37.2_1537_10000_0.138_0.2641_1.png
                gene_name: WDR37
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
WDR38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
Cons ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
KS ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
WDR38   10000 perm   2 sec   (6536 perm/sec)   p_kst 2.573000e-01   p_cons 3.180000e-01   p_joint 2.957000e-01

Outputting figure to mutsig2_images.part000000000190/WDR38.2_981_10000_0.2573_0.318_0.2957.png
                gene_name: WDR38
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 84 percent done.
WDR43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
KS ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
WDR43   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.883000e-01   p_cons 1.576000e-01   p_joint 1.957000e-01

Outputting figure to mutsig2_images.part000000000190/WDR43.2_2106_10000_0.1883_0.1576_0.1957.png
                gene_name: WDR43
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 86 percent done.
WDR48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.124885e-02	ci left: 7.645598e-01	ci right 7.810810e-01	k: 7729	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
WDR48   10000 perm   2 sec   (5963 perm/sec)   p_kst 6.812000e-01   p_cons 3.913000e-01   p_joint 7.729000e-01

Outputting figure to mutsig2_images.part000000000190/WDR48.2_2110_10000_0.6812_0.3913_0.7729.png
                gene_name: WDR48
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 88 percent done.
WDR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
Cons ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
KS ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
WDR5   10000 perm   2 sec   (6489 perm/sec)   p_kst 1.242000e-01   p_cons 3.659000e-01   p_joint 4.154000e-01

Joint ci ratio: 5.443463e-02	ci left: 2.002646e-01	ci right 2.115211e-01	k: 4117	n:20000
Cons ci ratio: 3.676653e-02	ci left: 3.556837e-01	ci right 3.690564e-01	k: 7247	n:20000
KS ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
WDR5   20000 perm   4 sec   (5698 perm/sec)   p_kst 1.283500e-01   p_cons 3.623500e-01   p_joint 2.058500e-01

Outputting figure to mutsig2_images.part000000000190/WDR5.2_1057_20000_0.12835_0.36235_0.20585.png
                gene_name: WDR5
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 89 percent done.
WDR54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
Cons ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
KS ci ratio: 5.335044e-02	ci left: 3.411431e-01	ci right 3.599440e-01	k: 3505	n:10000
WDR54   10000 perm   2 sec   (6406 perm/sec)   p_kst 3.505000e-01   p_cons 9.475000e-01   p_joint 6.720000e-01

Outputting figure to mutsig2_images.part000000000190/WDR54.2_1041_10000_0.3505_0.9475_0.672.png
                gene_name: WDR54
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 91 percent done.
WDR61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
Cons ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KS ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
WDR61   10000 perm   2 sec   (6586 perm/sec)   p_kst 5.719000e-01   p_cons 6.282000e-01   p_joint 6.893000e-01

Outputting figure to mutsig2_images.part000000000190/WDR61.2_958_10000_0.5719_0.6282_0.6893.png
                gene_name: WDR61
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 92 percent done.
WDR76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
Cons ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
KS ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
WDR76   10000 perm   2 sec   (6098 perm/sec)   p_kst 3.247000e-01   p_cons 3.311000e-01   p_joint 5.916000e-01

Outputting figure to mutsig2_images.part000000000190/WDR76.2_1933_10000_0.3247_0.3311_0.5916.png
                gene_name: WDR76
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
WDR82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
Cons ci ratio: 9.510880e-02	ci left: 1.382511e-01	ci right 1.521563e-01	k: 1451	n:10000
KS ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
WDR82   10000 perm   2 sec   (6642 perm/sec)   p_kst 6.646000e-01   p_cons 1.451000e-01   p_joint 8.789000e-01

Outputting figure to mutsig2_images.part000000000190/WDR82.2_978_10000_0.6646_0.1451_0.8789.png
                gene_name: WDR82
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 95 percent done.
WDR88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
Cons ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
WDR88   10000 perm   2 sec   (6263 perm/sec)   p_kst 2.100000e-03   p_cons 5.049000e-01   p_joint 4.200000e-03

Joint ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
Cons ci ratio: 2.744349e-02	ci left: 4.979955e-01	ci right 5.119030e-01	k: 10099	n:20000
KS ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
WDR88   20000 perm   4 sec   (5497 perm/sec)   p_kst 2.100000e-03   p_cons 5.049500e-01   p_joint 3.200000e-03

Joint ci ratio: 4.582351e-01	ci left: 1.878312e-03	ci right 3.021462e-03	k: 72	n:30000
Cons ci ratio: 2.221097e-02	ci left: 5.036924e-01	ci right 5.150391e-01	k: 15281	n:30000
KS ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
WDR88   30000 perm   6 sec   (5225 perm/sec)   p_kst 1.933333e-03   p_cons 5.093667e-01   p_joint 2.400000e-03

Joint ci ratio: 4.198056e-01	ci left: 1.720071e-03	ci right 2.654562e-03	k: 86	n:40000
Cons ci ratio: 1.925347e-02	ci left: 5.039879e-01	ci right 5.138108e-01	k: 20356	n:40000
KS ci ratio: 4.615547e-01	ci left: 1.386542e-03	ci right 2.238401e-03	k: 71	n:40000
WDR88   40000 perm   8 sec   (5062 perm/sec)   p_kst 1.775000e-03   p_cons 5.089000e-01   p_joint 2.150000e-03

Joint ci ratio: 2.787349e-01	ci left: 3.391256e-03	ci right 4.507551e-03	k: 196	n:50000
Cons ci ratio: 1.785153e-02	ci left: 4.865287e-01	ci right 4.953123e-01	k: 24546	n:50000
KS ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
WDR88   50000 perm   10 sec   (4935 perm/sec)   p_kst 1.760000e-03   p_cons 4.909200e-01   p_joint 3.920000e-03

Joint ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
Cons ci ratio: 1.628167e-02	ci left: 4.873587e-01	ci right 4.953755e-01	k: 29482	n:60000
KS ci ratio: 3.700562e-01	ci left: 1.522126e-03	ci right 2.227456e-03	k: 111	n:60000
WDR88   60000 perm   12 sec   (4828 perm/sec)   p_kst 1.850000e-03   p_cons 4.913667e-01   p_joint 2.316667e-03

Joint ci ratio: 2.329603e-01	ci left: 3.559389e-03	ci right 4.511020e-03	k: 281	n:70000
Cons ci ratio: 1.450713e-02	ci left: 5.068179e-01	ci right 5.142384e-01	k: 35737	n:70000
KS ci ratio: 3.517120e-01	ci left: 1.460564e-03	ci right 2.096164e-03	k: 123	n:70000
WDR88   70000 perm   15 sec   (4725 perm/sec)   p_kst 1.757143e-03   p_cons 5.105286e-01   p_joint 4.014286e-03

Joint ci ratio: 2.470382e-01	ci left: 2.750099e-03	ci right 3.536617e-03	k: 250	n:80000
Cons ci ratio: 1.356964e-02	ci left: 5.070794e-01	ci right 5.140198e-01	k: 40844	n:80000
KS ci ratio: 3.334025e-01	ci left: 1.437945e-03	ci right 2.024139e-03	k: 137	n:80000
WDR88   80000 perm   17 sec   (4614 perm/sec)   p_kst 1.712500e-03   p_cons 5.105500e-01   p_joint 3.125000e-03

Joint ci ratio: 2.848369e-01	ci left: 1.801201e-03	ci right 2.409384e-03	k: 188	n:90000
Cons ci ratio: 1.277158e-02	ci left: 5.081395e-01	ci right 5.146820e-01	k: 46027	n:90000
KS ci ratio: 3.197981e-01	ci left: 1.400575e-03	ci right 1.943467e-03	k: 149	n:90000
WDR88   90000 perm   20 sec   (4528 perm/sec)   p_kst 1.655556e-03   p_cons 5.114111e-01   p_joint 2.088889e-03

Joint ci ratio: 2.708672e-01	ci left: 1.807155e-03	ci right 2.382337e-03	k: 208	n:100000
Cons ci ratio: 1.213734e-02	ci left: 5.074364e-01	ci right 5.136429e-01	k: 51054	n:100000
KS ci ratio: 3.030838e-01	ci left: 1.417242e-03	ci right 1.932354e-03	k: 166	n:100000
WDR88   100000 perm   22 sec   (4446 perm/sec)   p_kst 1.660000e-03   p_cons 5.105400e-01   p_joint 2.080000e-03

Joint ci ratio: 2.570879e-01	ci left: 1.838135e-03	ci right 2.388644e-03	k: 231	n:110000
Cons ci ratio: 1.157533e-02	ci left: 5.074593e-01	ci right 5.133765e-01	k: 56146	n:110000
KS ci ratio: 2.903279e-01	ci left: 1.414620e-03	ci right 1.903167e-03	k: 181	n:110000
WDR88   110000 perm   25 sec   (4367 perm/sec)   p_kst 1.645455e-03   p_cons 5.104182e-01   p_joint 2.100000e-03

Joint ci ratio: 2.452179e-01	ci left: 1.864569e-03	ci right 2.393287e-03	k: 254	n:120000
Cons ci ratio: 1.108536e-02	ci left: 5.074589e-01	ci right 5.131239e-01	k: 61235	n:120000
KS ci ratio: 2.769536e-01	ci left: 1.436073e-03	ci right 1.905204e-03	k: 199	n:120000
WDR88   120000 perm   28 sec   (4295 perm/sec)   p_kst 1.658333e-03   p_cons 5.102917e-01   p_joint 2.116667e-03

Joint ci ratio: 2.369990e-01	ci left: 1.851238e-03	ci right 2.356000e-03	k: 272	n:130000
Cons ci ratio: 1.064309e-02	ci left: 5.079170e-01	ci right 5.133594e-01	k: 66383	n:130000
KS ci ratio: 2.683728e-01	ci left: 1.418769e-03	ci right 1.865472e-03	k: 212	n:130000
WDR88   130000 perm   31 sec   (4225 perm/sec)   p_kst 1.630769e-03   p_cons 5.106385e-01   p_joint 2.092308e-03

Joint ci ratio: 2.276036e-01	ci left: 1.873737e-03	ci right 2.361538e-03	k: 295	n:140000
Cons ci ratio: 1.025659e-02	ci left: 5.079849e-01	ci right 5.132290e-01	k: 71485	n:140000
KS ci ratio: 2.582638e-01	ci left: 1.430846e-03	ci right 1.861646e-03	k: 229	n:140000
WDR88   140000 perm   34 sec   (4156 perm/sec)   p_kst 1.635714e-03   p_cons 5.106071e-01   p_joint 2.107143e-03

Joint ci ratio: 2.182177e-01	ci left: 1.912484e-03	ci right 2.387089e-03	k: 321	n:150000
Cons ci ratio: 9.911069e-03	ci left: 5.079601e-01	ci right 5.130262e-01	k: 76574	n:150000
KS ci ratio: 2.472203e-01	ci left: 1.466595e-03	ci right 1.886377e-03	k: 250	n:150000
WDR88   150000 perm   37 sec   (4088 perm/sec)   p_kst 1.666667e-03   p_cons 5.104933e-01   p_joint 2.140000e-03

Joint ci ratio: 2.102077e-01	ci left: 1.940827e-03	ci right 2.402510e-03	k: 346	n:160000
Cons ci ratio: 9.607516e-03	ci left: 5.074597e-01	ci right 5.123649e-01	k: 81586	n:160000
KS ci ratio: 2.374821e-01	ci left: 1.498219e-03	ci right 1.907677e-03	k: 271	n:160000
WDR88   160000 perm   40 sec   (4016 perm/sec)   p_kst 1.693750e-03   p_cons 5.099125e-01   p_joint 2.162500e-03

Joint ci ratio: 2.058105e-01	ci left: 1.910297e-03	ci right 2.354015e-03	k: 361	n:170000
Cons ci ratio: 9.329128e-03	ci left: 5.070794e-01	ci right 5.118380e-01	k: 86608	n:170000
KS ci ratio: 2.324141e-01	ci left: 1.476520e-03	ci right 1.870199e-03	k: 283	n:170000
WDR88   170000 perm   43 sec   (3955 perm/sec)   p_kst 1.664706e-03   p_cons 5.094588e-01   p_joint 2.123529e-03

Joint ci ratio: 1.993081e-01	ci left: 1.930743e-03	ci right 2.363320e-03	k: 385	n:180000
Cons ci ratio: 9.391509e-03	ci left: 4.895267e-01	ci right 4.941513e-01	k: 88531	n:180000
KS ci ratio: 2.246369e-01	ci left: 1.499245e-03	ci right 1.883757e-03	k: 303	n:180000
WDR88   180000 perm   46 sec   (3887 perm/sec)   p_kst 1.683333e-03   p_cons 4.918389e-01   p_joint 2.138889e-03

Joint ci ratio: 1.938599e-01	ci left: 1.939217e-03	ci right 2.360415e-03	k: 407	n:190000
Cons ci ratio: 9.133465e-03	ci left: 4.900022e-01	ci right 4.945033e-01	k: 93528	n:190000
KS ci ratio: 2.182673e-01	ci left: 1.509821e-03	ci right 1.884593e-03	k: 321	n:190000
WDR88   190000 perm   50 sec   (3828 perm/sec)   p_kst 1.689474e-03   p_cons 4.922526e-01   p_joint 2.142105e-03

Joint ci ratio: 1.926908e-01	ci left: 1.866039e-03	ci right 2.268611e-03	k: 412	n:200000
Cons ci ratio: 8.903765e-03	ci left: 4.899716e-01	ci right 4.943586e-01	k: 98433	n:200000
KS ci ratio: 2.136733e-01	ci left: 1.500543e-03	ci right 1.864145e-03	k: 335	n:200000
WDR88   200000 perm   53 sec   (3770 perm/sec)   p_kst 1.675000e-03   p_cons 4.921650e-01   p_joint 2.060000e-03

Joint ci ratio: 1.877544e-01	ci left: 1.876955e-03	ci right 2.270326e-03	k: 434	n:210000
Cons ci ratio: 8.688745e-03	ci left: 4.900500e-01	ci right 4.943312e-01	k: 103360	n:210000
KS ci ratio: 2.090587e-01	ci left: 1.496736e-03	ci right 1.850581e-03	k: 350	n:210000
WDR88   210000 perm   57 sec   (3713 perm/sec)   p_kst 1.666667e-03   p_cons 4.921905e-01   p_joint 2.066667e-03

Joint ci ratio: 1.833801e-01	ci left: 1.882660e-03	ci right 2.267012e-03	k: 455	n:220000
Cons ci ratio: 8.492370e-03	ci left: 4.898997e-01	ci right 4.940823e-01	k: 108238	n:220000
KS ci ratio: 2.038954e-01	ci left: 1.506292e-03	ci right 1.852505e-03	k: 368	n:220000
WDR88   220000 perm   60 sec   (3660 perm/sec)   p_kst 1.672727e-03   p_cons 4.919909e-01   p_joint 2.068182e-03

Joint ci ratio: 1.787355e-01	ci left: 1.900426e-03	ci right 2.277516e-03	k: 479	n:230000
Cons ci ratio: 8.302592e-03	ci left: 4.901330e-01	ci right 4.942237e-01	k: 113201	n:230000
KS ci ratio: 1.988395e-01	ci left: 1.519246e-03	ci right 1.858728e-03	k: 387	n:230000
WDR88   230000 perm   64 sec   (3609 perm/sec)   p_kst 1.682609e-03   p_cons 4.921783e-01   p_joint 2.082609e-03

Joint ci ratio: 1.754767e-01	ci left: 1.892916e-03	ci right 2.260942e-03	k: 497	n:240000
Cons ci ratio: 8.127226e-03	ci left: 4.902104e-01	ci right 4.942148e-01	k: 118131	n:240000
KS ci ratio: 1.953476e-01	ci left: 1.511398e-03	ci right 1.842490e-03	k: 401	n:240000
WDR88   240000 perm   67 sec   (3561 perm/sec)   p_kst 1.670833e-03   p_cons 4.922125e-01   p_joint 2.070833e-03

Joint ci ratio: 1.985968e-01	ci left: 1.401498e-03	ci right 1.714240e-03	k: 388	n:250000
Cons ci ratio: 7.965901e-03	ci left: 4.900704e-01	ci right 4.939938e-01	k: 123008	n:250000
KS ci ratio: 1.918027e-01	ci left: 1.508034e-03	ci right 1.831695e-03	k: 416	n:250000
WDR88   250000 perm   71 sec   (3512 perm/sec)   p_kst 1.664000e-03   p_cons 4.920320e-01   p_joint 1.552000e-03

Joint ci ratio: 1.936786e-01	ci left: 1.420742e-03	ci right 1.729001e-03	k: 408	n:260000
Cons ci ratio: 7.803481e-03	ci left: 4.906034e-01	ci right 4.944506e-01	k: 128057	n:260000
KS ci ratio: 1.886628e-01	ci left: 1.501314e-03	ci right 1.817653e-03	k: 430	n:260000
WDR88   260000 perm   75 sec   (3463 perm/sec)   p_kst 1.653846e-03   p_cons 4.925269e-01   p_joint 1.569231e-03

Joint ci ratio: 1.913555e-01	ci left: 1.403373e-03	ci right 1.703786e-03	k: 418	n:270000
Cons ci ratio: 7.653371e-03	ci left: 4.909162e-01	ci right 4.946914e-01	k: 133057	n:270000
KS ci ratio: 1.858816e-01	ci left: 1.491600e-03	ci right 1.800737e-03	k: 443	n:270000
WDR88   270000 perm   79 sec   (3414 perm/sec)   p_kst 1.640741e-03   p_cons 4.928037e-01   p_joint 1.548148e-03

Joint ci ratio: 1.893351e-01	ci left: 1.383862e-03	ci right 1.676611e-03	k: 427	n:280000
Cons ci ratio: 7.517935e-03	ci left: 4.907858e-01	ci right 4.944929e-01	k: 137939	n:280000
KS ci ratio: 1.832198e-01	ci left: 1.482612e-03	ci right 1.784997e-03	k: 456	n:280000
WDR88   280000 perm   83 sec   (3365 perm/sec)   p_kst 1.628571e-03   p_cons 4.926393e-01   p_joint 1.525000e-03

Joint ci ratio: 1.867365e-01	ci left: 1.375573e-03	ci right 1.662123e-03	k: 439	n:290000
Cons ci ratio: 7.390819e-03	ci left: 4.905719e-01	ci right 4.942145e-01	k: 142794	n:290000
KS ci ratio: 1.808620e-01	ci left: 1.470980e-03	ci right 1.766709e-03	k: 468	n:290000
WDR88   290000 perm   87 sec   (3315 perm/sec)   p_kst 1.613793e-03   p_cons 4.923931e-01   p_joint 1.513793e-03

Joint ci ratio: 1.836327e-01	ci left: 1.377403e-03	ci right 1.659034e-03	k: 454	n:300000
Cons ci ratio: 7.267949e-03	ci left: 4.905094e-01	ci right 4.940907e-01	k: 147690	n:300000
KS ci ratio: 1.774876e-01	ci left: 1.479257e-03	ci right 1.770506e-03	k: 486	n:300000
WDR88   300000 perm   92 sec   (3272 perm/sec)   p_kst 1.620000e-03   p_cons 4.923000e-01   p_joint 1.513333e-03

Joint ci ratio: 1.810649e-01	ci left: 1.372992e-03	ci right 1.649364e-03	k: 467	n:310000
Cons ci ratio: 7.150088e-03	ci left: 4.905160e-01	ci right 4.940390e-01	k: 152606	n:310000
KS ci ratio: 1.749908e-01	ci left: 1.474708e-03	ci right 1.760545e-03	k: 500	n:310000
WDR88   310000 perm   96 sec   (3234 perm/sec)   p_kst 1.612903e-03   p_cons 4.922774e-01   p_joint 1.506452e-03

Joint ci ratio: 1.782312e-01	ci left: 1.374853e-03	ci right 1.646802e-03	k: 482	n:320000
Cons ci ratio: 7.035800e-03	ci left: 4.906632e-01	ci right 4.941307e-01	k: 157567	n:320000
KS ci ratio: 1.725965e-01	ci left: 1.470470e-03	ci right 1.751180e-03	k: 514	n:320000
WDR88   320000 perm   100 sec   (3197 perm/sec)   p_kst 1.606250e-03   p_cons 4.923969e-01   p_joint 1.506250e-03

Joint ci ratio: 1.739593e-01	ci left: 1.402715e-03	ci right 1.672826e-03	k: 506	n:330000
Cons ci ratio: 6.930309e-03	ci left: 4.905504e-01	ci right 4.939649e-01	k: 162445	n:330000
KS ci ratio: 1.687082e-01	ci left: 1.495533e-03	ci right 1.773942e-03	k: 538	n:330000
WDR88   330000 perm   104 sec   (3162 perm/sec)   p_kst 1.630303e-03   p_cons 4.922576e-01   p_joint 1.533333e-03

Joint ci ratio: 1.714417e-01	ci left: 1.403669e-03	ci right 1.669648e-03	k: 521	n:340000
Cons ci ratio: 6.826572e-03	ci left: 4.906534e-01	ci right 4.940173e-01	k: 167394	n:340000
KS ci ratio: 1.664089e-01	ci left: 1.493814e-03	ci right 1.767733e-03	k: 553	n:340000
WDR88   340000 perm   109 sec   (3123 perm/sec)   p_kst 1.626471e-03   p_cons 4.923353e-01   p_joint 1.532353e-03

Joint ci ratio: 1.685595e-01	ci left: 1.412806e-03	ci right 1.675558e-03	k: 539	n:350000
Cons ci ratio: 6.727895e-03	ci left: 4.907109e-01	ci right 4.940263e-01	k: 172329	n:350000
KS ci ratio: 1.639128e-01	ci left: 1.497698e-03	ci right 1.767804e-03	k: 570	n:350000
WDR88   350000 perm   114 sec   (3083 perm/sec)   p_kst 1.628571e-03   p_cons 4.923686e-01   p_joint 1.540000e-03

Joint ci ratio: 1.656693e-01	ci left: 1.424132e-03	ci right 1.683997e-03	k: 558	n:360000
Cons ci ratio: 6.634926e-03	ci left: 4.906489e-01	ci right 4.939179e-01	k: 177222	n:360000
KS ci ratio: 1.607066e-01	ci left: 1.517391e-03	ci right 1.785178e-03	k: 593	n:360000
WDR88   360000 perm   118 sec   (3046 perm/sec)   p_kst 1.647222e-03   p_cons 4.922833e-01   p_joint 1.550000e-03

Joint ci ratio: 1.632059e-01	ci left: 1.429698e-03	ci right 1.686318e-03	k: 575	n:370000
Cons ci ratio: 6.544646e-03	ci left: 4.906716e-01	ci right 4.938961e-01	k: 182145	n:370000
KS ci ratio: 1.583253e-01	ci left: 1.523087e-03	ci right 1.787518e-03	k: 611	n:370000
WDR88   370000 perm   123 sec   (3010 perm/sec)   p_kst 1.651351e-03   p_cons 4.922838e-01   p_joint 1.554054e-03

Joint ci ratio: 1.612583e-01	ci left: 1.427420e-03	ci right 1.680278e-03	k: 589	n:380000
Cons ci ratio: 6.457987e-03	ci left: 4.906908e-01	ci right 4.938725e-01	k: 187067	n:380000
KS ci ratio: 1.561710e-01	ci left: 1.525982e-03	ci right 1.786974e-03	k: 628	n:380000
WDR88   380000 perm   128 sec   (2974 perm/sec)   p_kst 1.652632e-03   p_cons 4.922816e-01   p_joint 1.550000e-03

Joint ci ratio: 1.587221e-01	ci left: 1.437588e-03	ci right 1.687860e-03	k: 608	n:390000
Cons ci ratio: 6.375336e-03	ci left: 4.906579e-01	ci right 4.937986e-01	k: 191969	n:390000
KS ci ratio: 1.531554e-01	ci left: 1.548478e-03	ci right 1.807734e-03	k: 653	n:390000
WDR88   390000 perm   133 sec   (2940 perm/sec)   p_kst 1.674359e-03   p_cons 4.922282e-01   p_joint 1.558974e-03

Joint ci ratio: 1.568029e-01	ci left: 1.437668e-03	ci right 1.684643e-03	k: 623	n:400000
Cons ci ratio: 6.294520e-03	ci left: 4.907270e-01	ci right 4.938281e-01	k: 196911	n:400000
KS ci ratio: 1.516562e-01	ci left: 1.541026e-03	ci right 1.796280e-03	k: 666	n:400000
WDR88   400000 perm   138 sec   (2905 perm/sec)   p_kst 1.665000e-03   p_cons 4.922775e-01   p_joint 1.557500e-03

Joint ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
Cons ci ratio: 6.217156e-03	ci left: 4.907564e-01	ci right 4.938194e-01	k: 201838	n:410000
KS ci ratio: 1.509806e-01	ci left: 1.517519e-03	ci right 1.767658e-03	k: 672	n:410000
WDR88   410000 perm   143 sec   (2871 perm/sec)   p_kst 1.639024e-03   p_cons 4.922878e-01   p_joint 1.534146e-03

Joint ci ratio: 1.538731e-01	ci left: 1.424128e-03	ci right 1.663785e-03	k: 647	n:420000
Cons ci ratio: 6.143220e-03	ci left: 4.907321e-01	ci right 4.937584e-01	k: 206743	n:420000
KS ci ratio: 1.488931e-01	ci left: 1.524929e-03	ci right 1.772504e-03	k: 691	n:420000
WDR88   420000 perm   148 sec   (2837 perm/sec)   p_kst 1.645238e-03   p_cons 4.922452e-01   p_joint 1.540476e-03

Joint ci ratio: 1.523529e-01	ci left: 1.420083e-03	ci right 1.656483e-03	k: 660	n:430000
Cons ci ratio: 6.069037e-03	ci left: 4.909418e-01	ci right 4.939327e-01	k: 211748	n:430000
KS ci ratio: 1.469933e-01	ci left: 1.529776e-03	ci right 1.774692e-03	k: 709	n:430000
WDR88   430000 perm   153 sec   (2808 perm/sec)   p_kst 1.648837e-03   p_cons 4.924372e-01   p_joint 1.534884e-03

Joint ci ratio: 1.502088e-01	ci left: 1.429356e-03	ci right 1.663650e-03	k: 679	n:440000
Cons ci ratio: 6.000230e-03	ci left: 4.909126e-01	ci right 4.938693e-01	k: 216652	n:440000
KS ci ratio: 1.452644e-01	ci left: 1.532233e-03	ci right 1.774406e-03	k: 726	n:440000
WDR88   440000 perm   158 sec   (2779 perm/sec)   p_kst 1.650000e-03   p_cons 4.923909e-01   p_joint 1.543182e-03

Joint ci ratio: 1.487936e-01	ci left: 1.425401e-03	ci right 1.656649e-03	k: 692	n:450000
Cons ci ratio: 5.935374e-03	ci left: 4.907449e-01	ci right 4.936685e-01	k: 221493	n:450000
KS ci ratio: 1.436919e-01	ci left: 1.532453e-03	ci right 1.771814e-03	k: 742	n:450000
WDR88   450000 perm   164 sec   (2749 perm/sec)   p_kst 1.648889e-03   p_cons 4.922067e-01   p_joint 1.537778e-03

Joint ci ratio: 1.473133e-01	ci left: 1.423721e-03	ci right 1.652196e-03	k: 706	n:460000
Cons ci ratio: 5.871043e-03	ci left: 4.907151e-01	ci right 4.936067e-01	k: 226394	n:460000
KS ci ratio: 1.424517e-01	ci left: 1.526388e-03	ci right 1.762569e-03	k: 755	n:460000
WDR88   460000 perm   169 sec   (2721 perm/sec)   p_kst 1.641304e-03   p_cons 4.921609e-01   p_joint 1.534783e-03

Joint ci ratio: 1.452721e-01	ci left: 1.434425e-03	ci right 1.661152e-03	k: 726	n:470000
Cons ci ratio: 5.808017e-03	ci left: 4.907506e-01	ci right 4.936112e-01	k: 231325	n:470000
KS ci ratio: 1.404223e-01	ci left: 1.539065e-03	ci right 1.773530e-03	k: 777	n:470000
WDR88   470000 perm   175 sec   (2693 perm/sec)   p_kst 1.653191e-03   p_cons 4.921809e-01   p_joint 1.544681e-03

Joint ci ratio: 1.436994e-01	ci left: 1.436670e-03	ci right 1.661082e-03	k: 742	n:480000
Cons ci ratio: 5.746692e-03	ci left: 4.908097e-01	ci right 4.936404e-01	k: 236268	n:480000
KS ci ratio: 1.387381e-01	ci left: 1.545202e-03	ci right 1.777546e-03	k: 796	n:480000
WDR88   480000 perm   180 sec   (2664 perm/sec)   p_kst 1.658333e-03   p_cons 4.922250e-01   p_joint 1.545833e-03

Joint ci ratio: 1.425533e-01	ci left: 1.430963e-03	ci right 1.652549e-03	k: 754	n:490000
Cons ci ratio: 5.686061e-03	ci left: 4.909727e-01	ci right 4.937743e-01	k: 241263	n:490000
KS ci ratio: 1.381341e-01	ci left: 1.527457e-03	ci right 1.756051e-03	k: 803	n:490000
WDR88   490000 perm   186 sec   (2636 perm/sec)   p_kst 1.638776e-03   p_cons 4.923735e-01   p_joint 1.538776e-03

Joint ci ratio: 1.407922e-01	ci left: 1.438997e-03	ci right 1.658844e-03	k: 773	n:500000
Cons ci ratio: 5.628975e-03	ci left: 4.909813e-01	ci right 4.937548e-01	k: 246184	n:500000
KS ci ratio: 1.366131e-01	ci left: 1.531671e-03	ci right 1.758166e-03	k: 821	n:500000
WDR88   500000 perm   192 sec   (2609 perm/sec)   p_kst 1.642000e-03   p_cons 4.923680e-01   p_joint 1.546000e-03

Joint ci ratio: 1.392709e-01	ci left: 1.442947e-03	ci right 1.660818e-03	k: 790	n:510000
Cons ci ratio: 5.572897e-03	ci left: 4.910505e-01	ci right 4.937966e-01	k: 251136	n:510000
KS ci ratio: 1.357905e-01	ci left: 1.520577e-03	ci right 1.743969e-03	k: 831	n:510000
WDR88   510000 perm   197 sec   (2583 perm/sec)   p_kst 1.629412e-03   p_cons 4.924235e-01   p_joint 1.549020e-03

Joint ci ratio: 1.382268e-01	ci left: 1.437474e-03	ci right 1.652757e-03	k: 802	n:520000
Cons ci ratio: 5.519566e-03	ci left: 4.910172e-01	ci right 4.937368e-01	k: 256036	n:520000
KS ci ratio: 1.344241e-01	ci left: 1.522923e-03	ci right 1.744228e-03	k: 848	n:520000
WDR88   520000 perm   203 sec   (2556 perm/sec)   p_kst 1.630769e-03   p_cons 4.923769e-01   p_joint 1.542308e-03

Joint ci ratio: 1.366195e-01	ci left: 1.444968e-03	ci right 1.658653e-03	k: 821	n:530000
Cons ci ratio: 5.467985e-03	ci left: 4.909626e-01	ci right 4.936564e-01	k: 260924	n:530000
KS ci ratio: 1.334070e-01	ci left: 1.517895e-03	ci right 1.736667e-03	k: 861	n:530000
WDR88   530000 perm   209 sec   (2530 perm/sec)   p_kst 1.624528e-03   p_cons 4.923094e-01   p_joint 1.549057e-03

Joint ci ratio: 1.357150e-01	ci left: 1.437886e-03	ci right 1.649002e-03	k: 832	n:540000
Cons ci ratio: 5.418005e-03	ci left: 4.908935e-01	ci right 4.935622e-01	k: 265803	n:540000
KS ci ratio: 1.325645e-01	ci left: 1.509478e-03	ci right 1.725555e-03	k: 872	n:540000
WDR88   540000 perm   216 sec   (2505 perm/sec)   p_kst 1.614815e-03   p_cons 4.922278e-01   p_joint 1.540741e-03

Joint ci ratio: 1.345889e-01	ci left: 1.436336e-03	ci right 1.645334e-03	k: 846	n:550000
Cons ci ratio: 5.367963e-03	ci left: 4.909579e-01	ci right 4.936022e-01	k: 270754	n:550000
KS ci ratio: 1.313662e-01	ci left: 1.510163e-03	ci right 1.724232e-03	k: 888	n:550000
WDR88   550000 perm   222 sec   (2479 perm/sec)   p_kst 1.614545e-03   p_cons 4.922800e-01   p_joint 1.538182e-03

Joint ci ratio: 1.334904e-01	ci left: 1.434849e-03	ci right 1.641791e-03	k: 860	n:560000
Cons ci ratio: 5.320443e-03	ci left: 4.909112e-01	ci right 4.935318e-01	k: 275644	n:560000
KS ci ratio: 1.299125e-01	ci left: 1.517744e-03	ci right 1.730323e-03	k: 908	n:560000
WDR88   560000 perm   228 sec   (2456 perm/sec)   p_kst 1.621429e-03   p_cons 4.922214e-01   p_joint 1.535714e-03

Joint ci ratio: 1.324183e-01	ci left: 1.433420e-03	ci right 1.638366e-03	k: 874	n:570000
Cons ci ratio: 5.273940e-03	ci left: 4.908873e-01	ci right 4.934847e-01	k: 280546	n:570000
KS ci ratio: 1.286448e-01	ci left: 1.521674e-03	ci right 1.732566e-03	k: 926	n:570000
WDR88   570000 perm   234 sec   (2434 perm/sec)   p_kst 1.624561e-03   p_cons 4.921860e-01   p_joint 1.533333e-03

Joint ci ratio: 1.312977e-01	ci left: 1.433715e-03	ci right 1.636833e-03	k: 889	n:580000
Cons ci ratio: 5.227951e-03	ci left: 4.909298e-01	ci right 4.935048e-01	k: 285486	n:580000
KS ci ratio: 1.275488e-01	ci left: 1.522141e-03	ci right 1.731164e-03	k: 942	n:580000
WDR88   580000 perm   240 sec   (2413 perm/sec)   p_kst 1.624138e-03   p_cons 4.922172e-01   p_joint 1.532759e-03

Joint ci ratio: 1.302772e-01	ci left: 1.432367e-03	ci right 1.633595e-03	k: 903	n:590000
Cons ci ratio: 5.183091e-03	ci left: 4.909761e-01	ci right 4.935291e-01	k: 290429	n:590000
KS ci ratio: 1.267454e-01	ci left: 1.516034e-03	ci right 1.722808e-03	k: 954	n:590000
WDR88   590000 perm   247 sec   (2392 perm/sec)   p_kst 1.616949e-03   p_cons 4.922525e-01   p_joint 1.530508e-03

Joint ci ratio: 1.289290e-01	ci left: 1.439135e-03	ci right 1.639061e-03	k: 922	n:600000
Cons ci ratio: 5.141097e-03	ci left: 4.908525e-01	ci right 4.933842e-01	k: 295271	n:600000
KS ci ratio: 1.257617e-01	ci left: 1.514977e-03	ci right 1.719884e-03	k: 969	n:600000
WDR88   600000 perm   253 sec   (2370 perm/sec)   p_kst 1.615000e-03   p_cons 4.921183e-01   p_joint 1.536667e-03

Joint ci ratio: 1.280308e-01	ci left: 1.436169e-03	ci right 1.634187e-03	k: 935	n:610000
Cons ci ratio: 5.098101e-03	ci left: 4.909299e-01	ci right 4.934407e-01	k: 300233	n:610000
KS ci ratio: 1.250552e-01	ci left: 1.507608e-03	ci right 1.710287e-03	k: 980	n:610000
WDR88   610000 perm   260 sec   (2350 perm/sec)   p_kst 1.606557e-03   p_cons 4.921852e-01   p_joint 1.532787e-03

Joint ci ratio: 1.268169e-01	ci left: 1.441112e-03	ci right 1.637786e-03	k: 953	n:620000
Cons ci ratio: 5.057487e-03	ci left: 4.908742e-01	ci right 4.933646e-01	k: 305114	n:620000
KS ci ratio: 1.237992e-01	ci left: 1.514546e-03	ci right 1.715963e-03	k: 1000	n:620000
WDR88   620000 perm   266 sec   (2329 perm/sec)   p_kst 1.612903e-03   p_cons 4.921194e-01   p_joint 1.537097e-03

Joint ci ratio: 1.255077e-01	ci left: 1.448982e-03	ci right 1.644537e-03	k: 973	n:630000
Cons ci ratio: 5.016824e-03	ci left: 4.909203e-01	ci right 4.933909e-01	k: 310058	n:630000
KS ci ratio: 1.225803e-01	ci left: 1.521274e-03	ci right 1.721449e-03	k: 1020	n:630000
WDR88   630000 perm   273 sec   (2308 perm/sec)   p_kst 1.619048e-03   p_cons 4.921556e-01   p_joint 1.544444e-03

Joint ci ratio: 1.241132e-01	ci left: 1.459644e-03	ci right 1.654288e-03	k: 995	n:640000
Cons ci ratio: 4.977594e-03	ci left: 4.909182e-01	ci right 4.933694e-01	k: 314972	n:640000
KS ci ratio: 1.213383e-01	ci left: 1.529316e-03	ci right 1.728364e-03	k: 1041	n:640000
WDR88   640000 perm   280 sec   (2288 perm/sec)   p_kst 1.626562e-03   p_cons 4.921437e-01   p_joint 1.554688e-03

Joint ci ratio: 1.229457e-01	ci left: 1.465515e-03	ci right 1.658971e-03	k: 1014	n:650000
Cons ci ratio: 4.938707e-03	ci left: 4.909731e-01	ci right 4.934054e-01	k: 319923	n:650000
KS ci ratio: 1.203035e-01	ci left: 1.532643e-03	ci right 1.730303e-03	k: 1059	n:650000
WDR88   650000 perm   287 sec   (2267 perm/sec)   p_kst 1.629231e-03   p_cons 4.921892e-01   p_joint 1.560000e-03

Joint ci ratio: 1.219879e-01	ci left: 1.466810e-03	ci right 1.658819e-03	k: 1030	n:660000
Cons ci ratio: 4.901282e-03	ci left: 4.909689e-01	ci right 4.933827e-01	k: 324836	n:660000
KS ci ratio: 1.194614e-01	ci left: 1.531467e-03	ci right 1.727494e-03	k: 1074	n:660000
WDR88   660000 perm   294 sec   (2247 perm/sec)   p_kst 1.627273e-03   p_cons 4.921758e-01   p_joint 1.560606e-03

Joint ci ratio: 1.212845e-01	ci left: 1.462283e-03	ci right 1.652516e-03	k: 1042	n:670000
Cons ci ratio: 4.865233e-03	ci left: 4.909097e-01	ci right 4.933053e-01	k: 329712	n:670000
KS ci ratio: 1.188005e-01	ci left: 1.525986e-03	ci right 1.720155e-03	k: 1086	n:670000
WDR88   670000 perm   301 sec   (2227 perm/sec)   p_kst 1.620896e-03   p_cons 4.921075e-01   p_joint 1.555224e-03

Joint ci ratio: 1.204788e-01	ci left: 1.460744e-03	ci right 1.649425e-03	k: 1056	n:680000
Cons ci ratio: 4.829754e-03	ci left: 4.908743e-01	ci right 4.932523e-01	k: 334603	n:680000
KS ci ratio: 1.181505e-01	ci left: 1.520669e-03	ci right 1.713029e-03	k: 1098	n:680000
WDR88   680000 perm   308 sec   (2209 perm/sec)   p_kst 1.614706e-03   p_cons 4.920632e-01   p_joint 1.552941e-03

Joint ci ratio: 1.199697e-01	ci left: 1.452225e-03	ci right 1.638956e-03	k: 1065	n:690000
Cons ci ratio: 4.792955e-03	ci left: 4.910574e-01	ci right 4.934181e-01	k: 339644	n:690000
KS ci ratio: 1.175111e-01	ci left: 1.515508e-03	ci right 1.706106e-03	k: 1110	n:690000
WDR88   690000 perm   315 sec   (2191 perm/sec)   p_kst 1.608696e-03   p_cons 4.922377e-01   p_joint 1.543478e-03

Joint ci ratio: 1.193558e-01	ci left: 1.446723e-03	ci right 1.631727e-03	k: 1076	n:700000
Cons ci ratio: 4.758208e-03	ci left: 4.911067e-01	ci right 4.934505e-01	k: 344595	n:700000
KS ci ratio: 1.168298e-01	ci left: 1.511885e-03	ci right 1.700849e-03	k: 1123	n:700000
WDR88   700000 perm   322 sec   (2174 perm/sec)   p_kst 1.604286e-03   p_cons 4.922786e-01   p_joint 1.537143e-03

Joint ci ratio: 1.179934e-01	ci left: 1.460513e-03	ci right 1.645001e-03	k: 1101	n:710000
Cons ci ratio: 4.724977e-03	ci left: 4.910731e-01	ci right 4.934002e-01	k: 349488	n:710000
KS ci ratio: 1.158545e-01	ci left: 1.516573e-03	ci right 1.704432e-03	k: 1142	n:710000
WDR88   710000 perm   329 sec   (2156 perm/sec)   p_kst 1.608451e-03   p_cons 4.922366e-01   p_joint 1.550704e-03

Joint ci ratio: 1.174621e-01	ci left: 1.453708e-03	ci right 1.636452e-03	k: 1111	n:720000
Cons ci ratio: 4.691755e-03	ci left: 4.911126e-01	ci right 4.934236e-01	k: 354433	n:720000
KS ci ratio: 1.152514e-01	ci left: 1.511694e-03	ci right 1.697908e-03	k: 1154	n:720000
WDR88   720000 perm   337 sec   (2139 perm/sec)   p_kst 1.602778e-03   p_cons 4.922681e-01   p_joint 1.543056e-03

Joint ci ratio: 1.168337e-01	ci left: 1.449750e-03	ci right 1.630954e-03	k: 1123	n:730000
Cons ci ratio: 4.660795e-03	ci left: 4.909826e-01	ci right 4.932777e-01	k: 359255	n:730000
KS ci ratio: 1.146576e-01	ci left: 1.506952e-03	ci right 1.691560e-03	k: 1166	n:730000
WDR88   730000 perm   344 sec   (2123 perm/sec)   p_kst 1.597260e-03   p_cons 4.921301e-01   p_joint 1.538356e-03

Joint ci ratio: 1.160618e-01	ci left: 1.449839e-03	ci right 1.629775e-03	k: 1138	n:740000
Cons ci ratio: 4.629575e-03	ci left: 4.909495e-01	ci right 4.932290e-01	k: 364146	n:740000
KS ci ratio: 1.136393e-01	ci left: 1.514156e-03	ci right 1.697889e-03	k: 1187	n:740000
WDR88   740000 perm   351 sec   (2106 perm/sec)   p_kst 1.604054e-03   p_cons 4.920892e-01   p_joint 1.537838e-03

Joint ci ratio: 1.153051e-01	ci left: 1.449929e-03	ci right 1.628623e-03	k: 1153	n:750000
Cons ci ratio: 4.599146e-03	ci left: 4.908986e-01	ci right 4.931628e-01	k: 369023	n:750000
KS ci ratio: 1.127879e-01	ci left: 1.517288e-03	ci right 1.699930e-03	k: 1205	n:750000
WDR88   750000 perm   359 sec   (2089 perm/sec)   p_kst 1.606667e-03   p_cons 4.920307e-01   p_joint 1.537333e-03

Joint ci ratio: 1.146121e-01	ci left: 1.448742e-03	ci right 1.626144e-03	k: 1167	n:760000
Cons ci ratio: 4.568684e-03	ci left: 4.909175e-01	ci right 4.931668e-01	k: 373952	n:760000
KS ci ratio: 1.122313e-01	ci left: 1.512668e-03	ci right 1.693796e-03	k: 1217	n:760000
WDR88   760000 perm   366 sec   (2074 perm/sec)   p_kst 1.601316e-03   p_cons 4.920421e-01   p_joint 1.535526e-03

Joint ci ratio: 1.138832e-01	ci left: 1.448851e-03	ci right 1.625063e-03	k: 1182	n:770000
Cons ci ratio: 4.539385e-03	ci left: 4.908736e-01	ci right 4.931082e-01	k: 378833	n:770000
KS ci ratio: 1.116827e-01	ci left: 1.508171e-03	ci right 1.687820e-03	k: 1229	n:770000
WDR88   770000 perm   374 sec   (2059 perm/sec)   p_kst 1.596104e-03   p_cons 4.919909e-01   p_joint 1.535065e-03

Joint ci ratio: 1.133577e-01	ci left: 1.443978e-03	ci right 1.618732e-03	k: 1193	n:780000
Cons ci ratio: 4.510666e-03	ci left: 4.908284e-01	ci right 4.930486e-01	k: 383712	n:780000
KS ci ratio: 1.111422e-01	ci left: 1.503791e-03	ci right 1.681994e-03	k: 1241	n:780000
WDR88   780000 perm   382 sec   (2043 perm/sec)   p_kst 1.591026e-03   p_cons 4.919385e-01   p_joint 1.529487e-03

Joint ci ratio: 1.127925e-01	ci left: 1.440460e-03	ci right 1.613861e-03	k: 1205	n:790000
Cons ci ratio: 4.481918e-03	ci left: 4.908476e-01	ci right 4.930537e-01	k: 388641	n:790000
KS ci ratio: 1.103892e-01	ci left: 1.505679e-03	ci right 1.682818e-03	k: 1258	n:790000
WDR88   790000 perm   390 sec   (2027 perm/sec)   p_kst 1.592405e-03   p_cons 4.919506e-01   p_joint 1.525316e-03

Joint ci ratio: 1.119141e-01	ci left: 1.445537e-03	ci right 1.618105e-03	k: 1224	n:800000
Cons ci ratio: 4.453656e-03	ci left: 4.908726e-01	ci right 4.930649e-01	k: 393575	n:800000
KS ci ratio: 1.096513e-01	ci left: 1.507523e-03	ci right 1.683617e-03	k: 1275	n:800000
WDR88   800000 perm   398 sec   (2012 perm/sec)   p_kst 1.593750e-03   p_cons 4.919688e-01   p_joint 1.530000e-03

Joint ci ratio: 1.110113e-01	ci left: 1.451694e-03	ci right 1.623507e-03	k: 1244	n:810000
Cons ci ratio: 4.426437e-03	ci left: 4.908391e-01	ci right 4.930178e-01	k: 398462	n:810000
KS ci ratio: 1.090548e-01	ci left: 1.505723e-03	ci right 1.680589e-03	k: 1289	n:810000
WDR88   810000 perm   406 sec   (1997 perm/sec)   p_kst 1.591358e-03   p_cons 4.919284e-01   p_joint 1.535802e-03

Joint ci ratio: 1.104364e-01	ci left: 1.449405e-03	ci right 1.620001e-03	k: 1257	n:820000
Cons ci ratio: 4.399163e-03	ci left: 4.908686e-01	ci right 4.930339e-01	k: 403400	n:820000
KS ci ratio: 1.083017e-01	ci left: 1.508715e-03	ci right 1.682641e-03	k: 1307	n:820000
WDR88   820000 perm   414 sec   (1981 perm/sec)   p_kst 1.593902e-03   p_cons 4.919512e-01   p_joint 1.532927e-03

Joint ci ratio: 1.096115e-01	ci left: 1.454204e-03	ci right 1.624004e-03	k: 1276	n:830000
Cons ci ratio: 4.372513e-03	ci left: 4.908829e-01	ci right 4.930352e-01	k: 408326	n:830000
KS ci ratio: 1.074828e-01	ci left: 1.513984e-03	ci right 1.687114e-03	k: 1327	n:830000
WDR88   830000 perm   422 sec   (1966 perm/sec)   p_kst 1.598795e-03   p_cons 4.919590e-01   p_joint 1.537349e-03

Joint ci ratio: 1.091852e-01	ci left: 1.448471e-03	ci right 1.616901e-03	k: 1286	n:840000
Cons ci ratio: 4.345493e-03	ci left: 4.909946e-01	ci right 4.931340e-01	k: 413334	n:840000
KS ci ratio: 1.070808e-01	ci left: 1.507546e-03	ci right 1.679254e-03	k: 1337	n:840000
WDR88   840000 perm   431 sec   (1950 perm/sec)   p_kst 1.591667e-03   p_cons 4.920643e-01   p_joint 1.530952e-03

Joint ci ratio: 1.087218e-01	ci left: 1.444018e-03	ci right 1.611173e-03	k: 1297	n:850000
Cons ci ratio: 4.319700e-03	ci left: 4.910190e-01	ci right 4.931458e-01	k: 418270	n:850000
KS ci ratio: 1.065251e-01	ci left: 1.505840e-03	ci right 1.676409e-03	k: 1351	n:850000
WDR88   850000 perm   439 sec   (1936 perm/sec)   p_kst 1.589412e-03   p_cons 4.920824e-01   p_joint 1.525882e-03

Joint ci ratio: 1.078525e-01	ci left: 1.450985e-03	ci right 1.617518e-03	k: 1318	n:860000
Cons ci ratio: 4.295439e-03	ci left: 4.909173e-01	ci right 4.930316e-01	k: 423098	n:860000
KS ci ratio: 1.058615e-01	ci left: 1.507573e-03	ci right 1.677208e-03	k: 1368	n:860000
WDR88   860000 perm   447 sec   (1922 perm/sec)   p_kst 1.590698e-03   p_cons 4.919744e-01   p_joint 1.532558e-03

Joint ci ratio: 1.072847e-01	ci left: 1.449966e-03	ci right 1.615450e-03	k: 1332	n:870000
Cons ci ratio: 4.270394e-03	ci left: 4.909570e-01	ci right 4.930592e-01	k: 428047	n:870000
KS ci ratio: 1.054008e-01	ci left: 1.503673e-03	ci right 1.672087e-03	k: 1380	n:870000
WDR88   870000 perm   456 sec   (1907 perm/sec)   p_kst 1.586207e-03   p_cons 4.920080e-01   p_joint 1.531034e-03

Joint ci ratio: 1.068849e-01	ci left: 1.444548e-03	ci right 1.608761e-03	k: 1342	n:880000
Cons ci ratio: 4.246294e-03	ci left: 4.909356e-01	ci right 4.930258e-01	k: 432943	n:880000
KS ci ratio: 1.049838e-01	ci left: 1.498757e-03	ci right 1.665915e-03	k: 1391	n:880000
WDR88   880000 perm   465 sec   (1893 perm/sec)   p_kst 1.580682e-03   p_cons 4.919807e-01   p_joint 1.525000e-03

Joint ci ratio: 1.062146e-01	ci left: 1.446909e-03	ci right 1.610295e-03	k: 1359	n:890000
Cons ci ratio: 4.221819e-03	ci left: 4.910069e-01	ci right 4.930853e-01	k: 437921	n:890000
KS ci ratio: 1.043485e-01	ci left: 1.500518e-03	ci right 1.666798e-03	k: 1408	n:890000
WDR88   890000 perm   474 sec   (1876 perm/sec)   p_kst 1.582022e-03   p_cons 4.920461e-01   p_joint 1.526966e-03

Joint ci ratio: 1.056337e-01	ci left: 1.447058e-03	ci right 1.609511e-03	k: 1374	n:900000
Cons ci ratio: 4.198397e-03	ci left: 4.910011e-01	ci right 4.930679e-01	k: 442831	n:900000
KS ci ratio: 1.037610e-01	ci left: 1.501161e-03	ci right 1.666518e-03	k: 1424	n:900000
WDR88   900000 perm   483 sec   (1862 perm/sec)   p_kst 1.582222e-03   p_cons 4.920344e-01   p_joint 1.526667e-03

Joint ci ratio: 1.051001e-01	ci left: 1.446135e-03	ci right 1.607614e-03	k: 1388	n:910000
Cons ci ratio: 4.175048e-03	ci left: 4.910327e-01	ci right 4.930882e-01	k: 447775	n:910000
KS ci ratio: 1.032911e-01	ci left: 1.498580e-03	ci right 1.662860e-03	k: 1437	n:910000
WDR88   910000 perm   492 sec   (1849 perm/sec)   p_kst 1.579121e-03   p_cons 4.920604e-01   p_joint 1.525275e-03

Joint ci ratio: 1.044999e-01	ci left: 1.447352e-03	ci right 1.607987e-03	k: 1404	n:920000
Cons ci ratio: 4.151894e-03	ci left: 4.910866e-01	ci right 4.931308e-01	k: 452740	n:920000
KS ci ratio: 1.027566e-01	ci left: 1.498176e-03	ci right 1.661510e-03	k: 1452	n:920000
WDR88   920000 perm   501 sec   (1835 perm/sec)   p_kst 1.578261e-03   p_cons 4.921087e-01   p_joint 1.526087e-03

Joint ci ratio: 1.039099e-01	ci left: 1.448545e-03	ci right 1.608349e-03	k: 1420	n:930000
Cons ci ratio: 4.128918e-03	ci left: 4.911641e-01	ci right 4.931973e-01	k: 457728	n:930000
KS ci ratio: 1.022652e-01	ci left: 1.496734e-03	ci right 1.659084e-03	k: 1466	n:930000
WDR88   930000 perm   510 sec   (1822 perm/sec)   p_kst 1.576344e-03   p_cons 4.921806e-01   p_joint 1.526882e-03

Joint ci ratio: 1.032219e-01	ci left: 1.452824e-03	ci right 1.611975e-03	k: 1439	n:940000
Cons ci ratio: 4.106345e-03	ci left: 4.912367e-01	ci right 4.932591e-01	k: 462713	n:940000
KS ci ratio: 1.016777e-01	ci left: 1.498435e-03	ci right 1.659980e-03	k: 1483	n:940000
WDR88   940000 perm   519 sec   (1810 perm/sec)   p_kst 1.577660e-03   p_cons 4.922479e-01   p_joint 1.530851e-03

Joint ci ratio: 1.026531e-01	ci left: 1.453940e-03	ci right 1.612282e-03	k: 1455	n:950000
Cons ci ratio: 4.085617e-03	ci left: 4.911268e-01	ci right 4.931385e-01	k: 467526	n:950000
KS ci ratio: 1.012354e-01	ci left: 1.495999e-03	ci right 1.656538e-03	k: 1496	n:950000
WDR88   950000 perm   528 sec   (1798 perm/sec)   p_kst 1.574737e-03   p_cons 4.921326e-01   p_joint 1.531579e-03

Joint ci ratio: 1.019896e-01	ci left: 1.458080e-03	ci right 1.615785e-03	k: 1474	n:960000
Cons ci ratio: 4.064437e-03	ci left: 4.911130e-01	ci right 4.931142e-01	k: 472429	n:960000
KS ci ratio: 1.006654e-01	ci left: 1.497677e-03	ci right 1.657438e-03	k: 1513	n:960000
WDR88   960000 perm   537 sec   (1786 perm/sec)   p_kst 1.576042e-03   p_cons 4.921135e-01   p_joint 1.535417e-03

Joint ci ratio: 1.016117e-01	ci left: 1.454099e-03	ci right 1.610757e-03	k: 1485	n:970000
Cons ci ratio: 4.043442e-03	ci left: 4.911170e-01	ci right 4.931078e-01	k: 477349	n:970000
KS ci ratio: 1.002033e-01	ci left: 1.496307e-03	ci right 1.655146e-03	k: 1527	n:970000
WDR88   970000 perm   547 sec   (1774 perm/sec)   p_kst 1.574227e-03   p_cons 4.921124e-01   p_joint 1.530928e-03

Joint ci ratio: 1.012040e-01	ci left: 1.451196e-03	ci right 1.606876e-03	k: 1497	n:980000
Cons ci ratio: 4.022161e-03	ci left: 4.911964e-01	ci right 4.931771e-01	k: 482343	n:980000
KS ci ratio: 9.961810e-02	ci left: 1.498947e-03	ci right 1.657083e-03	k: 1545	n:980000
WDR88   980000 perm   556 sec   (1763 perm/sec)   p_kst 1.576531e-03   p_cons 4.921867e-01   p_joint 1.527551e-03

Joint ci ratio: 1.005017e-01	ci left: 1.457215e-03	ci right 1.612392e-03	k: 1518	n:990000
Cons ci ratio: 4.001228e-03	ci left: 4.912723e-01	ci right 4.932429e-01	k: 487335	n:990000
KS ci ratio: 9.894808e-02	ci left: 1.504492e-03	ci right 1.662083e-03	k: 1566	n:990000
WDR88   990000 perm   565 sec   (1751 perm/sec)   p_kst 1.581818e-03   p_cons 4.922576e-01   p_joint 1.533333e-03

Joint ci ratio: 1.001073e-01	ci left: 1.454341e-03	ci right 1.608569e-03	k: 1530	n:1000000
Cons ci ratio: 3.981702e-03	ci left: 4.912107e-01	ci right 4.931714e-01	k: 492191	n:1000000
KS ci ratio: 9.866548e-02	ci left: 1.498225e-03	ci right 1.654685e-03	k: 1575	n:1000000
WDR88   1000000 perm   575 sec   (1739 perm/sec)   p_kst 1.575000e-03   p_cons 4.921910e-01   p_joint 1.530000e-03

Joint ci ratio: 9.945949e-02	ci left: 1.459250e-03	ci right 1.612938e-03	k: 1550	n:1010000
Cons ci ratio: 3.961768e-03	ci left: 4.912374e-01	ci right 4.931884e-01	k: 497135	n:1010000
KS ci ratio: 9.804512e-02	ci left: 1.502706e-03	ci right 1.658591e-03	k: 1595	n:1010000
WDR88   1010000 perm   584 sec   (1728 perm/sec)   p_kst 1.579208e-03   p_cons 4.922129e-01   p_joint 1.534653e-03

Outputting figure to mutsig2_images.part000000000190/WDR88.2_1463_1010000_0.0015792_0.49221_0.0015347.png
                gene_name: WDR88
               theta_stop: 0.099 
                    nperm: 1010000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 97 percent done.
WDR92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
Cons ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
KS ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
WDR92   10000 perm   2 sec   (6300 perm/sec)   p_kst 3.816000e-01   p_cons 4.541000e-01   p_joint 4.992000e-01

Outputting figure to mutsig2_images.part000000000190/WDR92.2_1106_10000_0.3816_0.4541_0.4992.png
                gene_name: WDR92
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 98 percent done.
WEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
Cons ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
KS ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
WEE2   10000 perm   2 sec   (6144 perm/sec)   p_kst 7.210000e-01   p_cons 7.794000e-01   p_joint 8.290000e-01

Outputting figure to mutsig2_images.part000000000190/WEE2.2_1752_10000_0.721_0.7794_0.829.png
                gene_name: WEE2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000190
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 190 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 4422695: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000191> was used as the working directory.
Started at Wed Oct 24 18:10:34 2012
Results reported at Wed Oct 24 21:31:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000191.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000191.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 191  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000191.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12202.21 sec.
    Max Memory :      5333 MB
    Max Swap   :      7729 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
191
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 191
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 191: processing genes 17190 - 17280
Calculating significance of each gene.
Using projection method.
17190	WFDC1	1
17191	WFDC10A	1
17192	WFDC10B	2.669557e-01
17193	WFDC11	3.150892e-01
17194	WFDC12	4.715701e-02
17195	WFDC13	1
17196	WFDC2	1
17197	WFDC3	7.644056e-01
17198	WFDC5	1
17199	WFDC6	1
17200	WFDC8	1
17201	WFDC9	1
17202	WFIKKN1	1
17203	WFIKKN2	9.731661e-01
17204	WFS1	9.139437e-01
17205	WHAMM	1
17206	WHSC1	9.989839e-01
17207	WHSC1L1	1
17208	WHSC2	1
17209	WIBG	3.876337e-01
17210	WIF1	1
17211	WIPF1	2.407140e-02
17212	WIPF2	9.115311e-01
17213	WIPF3	3.097442e-01
17214	WIPI1	2.200832e-01
17215	WIPI2	4.438828e-01
17216	WISP1	8.049668e-01
17217	WISP2	7.271364e-01
17218	WISP3	5.460007e-01
17219	WIZ	9.705284e-01
17220	WLS	7.998860e-01
17221	WNK1	9.999995e-01
17222	WNK2	1
In gene WNK3 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 5389    n = 1	mu =   6.02e-07
17223	WNK3	1.589237e-01
17224	WNK4	8.336030e-01
17225	WNT1	2.320267e-01
17226	WNT10A	1.445842e-01
17227	WNT10B	1
17228	WNT11	5.241722e-01
17229	WNT16	5.066684e-01
17230	WNT2	3.030494e-01
17231	WNT2B	5.919753e-01
17232	WNT3	1
17233	WNT3A	1.809061e-01
17234	WNT4	7.835743e-01
17235	WNT5A	7.768248e-01
17236	WNT5B	5.895475e-01
17237	WNT6	8.529167e-01
17238	WNT7A	7.071251e-02
17239	WNT7B	5.777778e-01
17240	WNT8A	3.499237e-01
17241	WNT8B	5.288119e-01
17242	WNT9A	1
17243	WNT9B	7.442030e-02
17244	WRAP53	1
17245	WRB	1
17246	WRN	3.856870e-01
17247	WRNIP1	8.788099e-01
17248	WSB1	5.897518e-01
17249	WSB2	1
17250	WSCD1	1
17251	WSCD2	5.025326e-03
17252	WT1	4.323297e-01
17253	WTAP	1.005244e-01
17254	WTIP	1
17255	WWC1	9.772492e-01
17256	WWC2	8.339518e-01
17257	WWC3	9.894260e-01
17258	WWOX	6.743728e-01
17259	WWP1	9.618062e-01
17260	WWP2	1
17261	WWTR1	6.022950e-01
17262	XAB2	1
17263	XAF1	6.959828e-01
17264	XAGE3	1
17265	XAGE5	1.168978e-01
17266	XBP1	1
17267	XCL1	2.299970e-02
17268	XCL2	1.517268e-02
17269	XCR1	8.889971e-01
17270	XDH	9.822594e-01
17271	XG	4.845487e-01
17272	XIAP	1.693323e-01
17273	XIRP1	1
17274	XIRP2	4.314524e-01
17275	XK	1
17276	XKR3	1
17277	XKR4	7.046121e-01
17278	XKR5	1
17279	XKR6	1.156271e-01
17280	XKR7	1
Done

Running MutSig 2:
Scatter job 191: processing genes 17190 - 17280
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
XIRP2
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
Cons ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
XIRP2   10000 perm   5 sec   (2006 perm/sec)   p_kst 2.700000e-03   p_cons 2.100000e-01   p_joint 2.230000e-02

Joint ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
Cons ci ratio: 5.435984e-02	ci left: 2.007100e-01	ci right 2.119755e-01	k: 4126	n:20000
KS ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
XIRP2   20000 perm   12 sec   (1618 perm/sec)   p_kst 1.700000e-03   p_cons 2.063000e-01   p_joint 1.100000e-02

Joint ci ratio: 2.374838e-01	ci left: 7.931051e-03	ci right 1.009897e-02	k: 269	n:30000
Cons ci ratio: 4.446400e-02	ci left: 2.011710e-01	ci right 2.103527e-01	k: 6172	n:30000
KS ci ratio: 5.484339e-01	ci left: 1.237277e-03	ci right 2.196709e-03	k: 50	n:30000
XIRP2   30000 perm   18 sec   (1686 perm/sec)   p_kst 1.666667e-03   p_cons 2.057333e-01   p_joint 8.966667e-03

Joint ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
Cons ci ratio: 3.637066e-02	ci left: 2.209402e-01	ci right 2.291498e-01	k: 9001	n:40000
KS ci ratio: 4.858149e-01	ci left: 1.232406e-03	ci right 2.042711e-03	k: 64	n:40000
XIRP2   40000 perm   23 sec   (1717 perm/sec)   p_kst 1.600000e-03   p_cons 2.250250e-01   p_joint 2.625000e-03

Joint ci ratio: 2.410786e-01	ci left: 4.626033e-03	ci right 5.912435e-03	k: 262	n:50000
Cons ci ratio: 3.466961e-02	ci left: 2.000777e-01	ci right 2.071567e-01	k: 10180	n:50000
KS ci ratio: 4.435018e-01	ci left: 1.215529e-03	ci right 1.924365e-03	k: 77	n:50000
XIRP2   50000 perm   29 sec   (1735 perm/sec)   p_kst 1.540000e-03   p_cons 2.036000e-01   p_joint 5.240000e-03

Joint ci ratio: 2.324677e-01	ci left: 4.168472e-03	ci right 5.280269e-03	k: 282	n:60000
Cons ci ratio: 2.980911e-02	ci left: 2.203872e-01	ci right 2.270728e-01	k: 13423	n:60000
KS ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
XIRP2   60000 perm   35 sec   (1724 perm/sec)   p_kst 1.633333e-03   p_cons 2.237167e-01   p_joint 4.700000e-03

Joint ci ratio: 2.359184e-01	ci left: 3.465243e-03	ci right 4.405185e-03	k: 274	n:70000
Cons ci ratio: 2.767682e-02	ci left: 2.196507e-01	ci right 2.258295e-01	k: 15591	n:70000
KS ci ratio: 3.620986e-01	ci left: 1.369517e-03	ci right 1.987257e-03	k: 116	n:70000
XIRP2   70000 perm   40 sec   (1731 perm/sec)   p_kst 1.657143e-03   p_cons 2.227286e-01   p_joint 3.914286e-03

Joint ci ratio: 1.720099e-01	ci left: 5.895018e-03	ci right 7.016225e-03	k: 515	n:80000
Cons ci ratio: 2.589157e-02	ci left: 2.198208e-01	ci right 2.255994e-01	k: 17816	n:80000
KS ci ratio: 3.321990e-01	ci left: 1.449402e-03	ci right 2.037678e-03	k: 138	n:80000
XIRP2   80000 perm   46 sec   (1726 perm/sec)   p_kst 1.725000e-03   p_cons 2.227000e-01   p_joint 6.437500e-03

Joint ci ratio: 1.788189e-01	ci left: 4.836084e-03	ci right 5.796225e-03	k: 477	n:90000
Cons ci ratio: 2.442424e-02	ci left: 2.197972e-01	ci right 2.252430e-01	k: 20026	n:90000
KS ci ratio: 3.145890e-01	ci left: 1.451714e-03	ci right 2.003421e-03	k: 154	n:90000
XIRP2   90000 perm   52 sec   (1723 perm/sec)   p_kst 1.711111e-03   p_cons 2.225111e-01   p_joint 5.300000e-03

Joint ci ratio: 1.862537e-01	ci left: 3.999210e-03	ci right 4.829939e-03	k: 440	n:100000
Cons ci ratio: 2.319516e-02	ci left: 2.195767e-01	ci right 2.247395e-01	k: 22215	n:100000
KS ci ratio: 2.960633e-01	ci left: 1.491239e-03	ci right 2.018335e-03	k: 174	n:100000
XIRP2   100000 perm   58 sec   (1722 perm/sec)   p_kst 1.740000e-03   p_cons 2.221500e-01   p_joint 4.400000e-03

Joint ci ratio: 1.423623e-01	ci left: 6.357917e-03	ci right 7.341082e-03	k: 752	n:110000
Cons ci ratio: 2.212538e-02	ci left: 2.195469e-01	ci right 2.244678e-01	k: 24420	n:110000
KS ci ratio: 2.741990e-01	ci left: 1.600495e-03	ci right 2.117245e-03	k: 203	n:110000
XIRP2   110000 perm   64 sec   (1720 perm/sec)   p_kst 1.845455e-03   p_cons 2.220000e-01   p_joint 6.836364e-03

Joint ci ratio: 1.433644e-01	ci left: 5.747605e-03	ci right 6.643178e-03	k: 742	n:120000
Cons ci ratio: 2.116256e-02	ci left: 2.199916e-01	ci right 2.247052e-01	k: 26681	n:120000
KS ci ratio: 2.634437e-01	ci left: 1.599243e-03	ci right 2.091998e-03	k: 220	n:120000
XIRP2   120000 perm   70 sec   (1707 perm/sec)   p_kst 1.833333e-03   p_cons 2.223417e-01   p_joint 6.183333e-03

Joint ci ratio: 1.457859e-01	ci left: 5.127423e-03	ci right 5.941026e-03	k: 718	n:130000
Cons ci ratio: 2.033934e-02	ci left: 2.199655e-01	ci right 2.244931e-01	k: 28889	n:130000
KS ci ratio: 2.507157e-01	ci left: 1.641758e-03	ci right 2.119361e-03	k: 243	n:130000
XIRP2   130000 perm   76 sec   (1704 perm/sec)   p_kst 1.869231e-03   p_cons 2.222231e-01   p_joint 5.523077e-03

Joint ci ratio: 1.431380e-01	ci left: 4.947032e-03	ci right 5.716532e-03	k: 745	n:140000
Cons ci ratio: 1.959840e-02	ci left: 2.200672e-01	ci right 2.244300e-01	k: 31114	n:140000
KS ci ratio: 2.442975e-01	ci left: 1.611585e-03	ci right 2.066588e-03	k: 256	n:140000
XIRP2   140000 perm   82 sec   (1697 perm/sec)   p_kst 1.828571e-03   p_cons 2.222429e-01   p_joint 5.321429e-03

Joint ci ratio: 1.425884e-01	ci left: 4.655749e-03	ci right 5.376922e-03	k: 751	n:150000
Cons ci ratio: 1.893476e-02	ci left: 2.201248e-01	ci right 2.243393e-01	k: 33334	n:150000
KS ci ratio: 2.370324e-01	ci left: 1.604381e-03	ci right 2.041902e-03	k: 272	n:150000
XIRP2   150000 perm   89 sec   (1690 perm/sec)   p_kst 1.813333e-03   p_cons 2.222267e-01   p_joint 5.006667e-03

Joint ci ratio: 1.439636e-01	ci left: 4.280341e-03	ci right 4.950304e-03	k: 737	n:160000
Cons ci ratio: 1.834954e-02	ci left: 2.198908e-01	ci right 2.239693e-01	k: 35508	n:160000
KS ci ratio: 2.280200e-01	ci left: 1.633603e-03	ci right 2.059773e-03	k: 294	n:160000
XIRP2   160000 perm   95 sec   (1683 perm/sec)   p_kst 1.837500e-03   p_cons 2.219250e-01   p_joint 4.606250e-03

Joint ci ratio: 1.417811e-01	ci left: 4.158996e-03	ci right 4.799261e-03	k: 760	n:170000
Cons ci ratio: 1.781299e-02	ci left: 2.197331e-01	ci right 2.236882e-01	k: 37690	n:170000
KS ci ratio: 2.231596e-01	ci left: 1.609656e-03	ci right 2.019398e-03	k: 307	n:170000
XIRP2   170000 perm   102 sec   (1672 perm/sec)   p_kst 1.805882e-03   p_cons 2.217059e-01   p_joint 4.470588e-03

Joint ci ratio: 1.406891e-01	ci left: 3.992227e-03	ci right 4.601686e-03	k: 772	n:180000
Cons ci ratio: 1.729640e-02	ci left: 2.200818e-01	ci right 2.239271e-01	k: 39960	n:180000
KS ci ratio: 2.175811e-01	ci left: 1.604213e-03	ci right 2.000997e-03	k: 323	n:180000
XIRP2   180000 perm   108 sec   (1662 perm/sec)   p_kst 1.794444e-03   p_cons 2.220000e-01   p_joint 4.288889e-03

Joint ci ratio: 1.393540e-01	ci left: 3.858272e-03	ci right 4.441227e-03	k: 787	n:190000
Cons ci ratio: 1.684998e-02	ci left: 2.198286e-01	ci right 2.235694e-01	k: 42122	n:190000
KS ci ratio: 2.099410e-01	ci left: 1.639339e-03	ci right 2.028744e-03	k: 347	n:190000
XIRP2   190000 perm   115 sec   (1653 perm/sec)   p_kst 1.826316e-03   p_cons 2.216947e-01   p_joint 4.142105e-03

Joint ci ratio: 1.367787e-01	ci left: 3.810171e-03	ci right 4.374352e-03	k: 817	n:200000
Cons ci ratio: 1.642904e-02	ci left: 2.197564e-01	ci right 2.234017e-01	k: 44315	n:200000
KS ci ratio: 2.064156e-01	ci left: 1.614242e-03	ci right 1.990433e-03	k: 359	n:200000
XIRP2   200000 perm   122 sec   (1644 perm/sec)   p_kst 1.795000e-03   p_cons 2.215750e-01   p_joint 4.085000e-03

Joint ci ratio: 1.377248e-01	ci left: 3.578122e-03	ci right 4.111908e-03	k: 806	n:210000
Cons ci ratio: 1.602709e-02	ci left: 2.199296e-01	ci right 2.234876e-01	k: 46558	n:210000
KS ci ratio: 2.006449e-01	ci left: 1.632279e-03	ci right 2.000738e-03	k: 380	n:210000
XIRP2   210000 perm   129 sec   (1634 perm/sec)   p_kst 1.809524e-03   p_cons 2.217048e-01   p_joint 3.838095e-03

Joint ci ratio: 1.466700e-01	ci left: 2.998943e-03	ci right 3.477930e-03	k: 711	n:220000
Cons ci ratio: 1.565512e-02	ci left: 2.200472e-01	ci right 2.235238e-01	k: 48792	n:220000
KS ci ratio: 1.955765e-01	ci left: 1.644486e-03	ci right 2.005206e-03	k: 400	n:220000
XIRP2   220000 perm   135 sec   (1624 perm/sec)   p_kst 1.818182e-03   p_cons 2.217818e-01   p_joint 3.231818e-03

Joint ci ratio: 1.491159e-01	ci left: 2.772230e-03	ci right 3.223048e-03	k: 688	n:230000
Cons ci ratio: 1.529345e-02	ci left: 2.204807e-01	ci right 2.238829e-01	k: 51101	n:230000
KS ci ratio: 1.917887e-01	ci left: 1.639178e-03	ci right 1.990958e-03	k: 416	n:230000
XIRP2   230000 perm   142 sec   (1615 perm/sec)   p_kst 1.808696e-03   p_cons 2.221783e-01   p_joint 2.991304e-03

Joint ci ratio: 1.537838e-01	ci left: 2.492331e-03	ci right 2.911489e-03	k: 647	n:240000
Cons ci ratio: 1.498587e-02	ci left: 2.201848e-01	ci right 2.235135e-01	k: 53243	n:240000
KS ci ratio: 1.864947e-01	ci left: 1.666147e-03	ci right 2.012728e-03	k: 440	n:240000
XIRP2   240000 perm   150 sec   (1604 perm/sec)   p_kst 1.833333e-03   p_cons 2.218458e-01   p_joint 2.695833e-03

Joint ci ratio: 1.576181e-01	ci left: 2.273448e-03	ci right 2.666228e-03	k: 616	n:250000
Cons ci ratio: 1.468573e-02	ci left: 2.201567e-01	ci right 2.234177e-01	k: 55446	n:250000
KS ci ratio: 1.838072e-01	ci left: 1.649090e-03	ci right 1.986628e-03	k: 453	n:250000
XIRP2   250000 perm   157 sec   (1594 perm/sec)   p_kst 1.812000e-03   p_cons 2.217840e-01   p_joint 2.464000e-03

Joint ci ratio: 1.576256e-01	ci left: 2.186000e-03	ci right 2.563691e-03	k: 616	n:260000
Cons ci ratio: 1.440486e-02	ci left: 2.200853e-01	ci right 2.232824e-01	k: 57637	n:260000
KS ci ratio: 1.789440e-01	ci left: 1.677454e-03	ci right 2.010731e-03	k: 478	n:260000
XIRP2   260000 perm   164 sec   (1583 perm/sec)   p_kst 1.838462e-03   p_cons 2.216808e-01   p_joint 2.369231e-03

Joint ci ratio: 1.548889e-01	ci left: 2.183332e-03	ci right 2.553405e-03	k: 638	n:270000
Cons ci ratio: 1.413951e-02	ci left: 2.200198e-01	ci right 2.231566e-01	k: 59828	n:270000
KS ci ratio: 1.756738e-01	ci left: 1.679034e-03	ci right 2.005881e-03	k: 496	n:270000
XIRP2   270000 perm   172 sec   (1573 perm/sec)   p_kst 1.837037e-03   p_cons 2.215852e-01   p_joint 2.362963e-03

Joint ci ratio: 1.548955e-01	ci left: 2.105350e-03	ci right 2.462220e-03	k: 638	n:280000
Cons ci ratio: 1.388514e-02	ci left: 2.200378e-01	ci right 2.231180e-01	k: 62041	n:280000
KS ci ratio: 1.725766e-01	ci left: 1.680553e-03	ci right 2.001327e-03	k: 514	n:280000
XIRP2   280000 perm   179 sec   (1564 perm/sec)   p_kst 1.835714e-03   p_cons 2.215750e-01   p_joint 2.278571e-03

Joint ci ratio: 1.518364e-01	ci left: 2.118967e-03	ci right 2.470408e-03	k: 664	n:290000
Cons ci ratio: 1.364497e-02	ci left: 2.200310e-01	ci right 2.230573e-01	k: 64247	n:290000
KS ci ratio: 1.677562e-01	ci left: 1.721649e-03	ci right 2.040161e-03	k: 544	n:290000
XIRP2   290000 perm   187 sec   (1554 perm/sec)   p_kst 1.875862e-03   p_cons 2.215414e-01   p_joint 2.289655e-03

Joint ci ratio: 1.510476e-01	ci left: 2.070780e-03	ci right 2.412283e-03	k: 671	n:300000
Cons ci ratio: 1.340222e-02	ci left: 2.204008e-01	ci right 2.233779e-01	k: 66566	n:300000
KS ci ratio: 1.649063e-01	ci left: 1.724958e-03	ci right 2.038123e-03	k: 563	n:300000
XIRP2   300000 perm   194 sec   (1546 perm/sec)   p_kst 1.876667e-03   p_cons 2.218867e-01   p_joint 2.236667e-03

Joint ci ratio: 1.476776e-01	ci left: 2.100246e-03	ci right 2.438199e-03	k: 702	n:310000
Cons ci ratio: 1.317676e-02	ci left: 2.206217e-01	ci right 2.235512e-01	k: 68846	n:310000
KS ci ratio: 1.619188e-01	ci left: 1.734287e-03	ci right 2.042886e-03	k: 584	n:310000
XIRP2   310000 perm   202 sec   (1538 perm/sec)   p_kst 1.883871e-03   p_cons 2.220839e-01   p_joint 2.264516e-03

Joint ci ratio: 1.464356e-01	ci left: 2.070731e-03	ci right 2.400887e-03	k: 714	n:320000
Cons ci ratio: 1.296020e-02	ci left: 2.208853e-01	ci right 2.237697e-01	k: 71144	n:320000
KS ci ratio: 1.596167e-01	ci left: 1.731078e-03	ci right 2.034307e-03	k: 601	n:320000
XIRP2   320000 perm   209 sec   (1529 perm/sec)   p_kst 1.878125e-03   p_cons 2.223250e-01   p_joint 2.231250e-03

Joint ci ratio: 1.301262e-01	ci left: 2.563929e-03	ci right 2.923680e-03	k: 904	n:330000
Cons ci ratio: 1.276706e-02	ci left: 2.207795e-01	ci right 2.236193e-01	k: 73325	n:330000
KS ci ratio: 1.571559e-01	ci left: 1.733915e-03	ci right 2.032517e-03	k: 620	n:330000
XIRP2   330000 perm   217 sec   (1521 perm/sec)   p_kst 1.878788e-03   p_cons 2.221970e-01   p_joint 2.739394e-03

Joint ci ratio: 1.287132e-01	ci left: 2.545436e-03	ci right 2.898418e-03	k: 924	n:340000
Cons ci ratio: 1.257052e-02	ci left: 2.210031e-01	ci right 2.238017e-01	k: 75616	n:340000
KS ci ratio: 1.540835e-01	ci left: 1.753585e-03	ci right 2.049126e-03	k: 645	n:340000
XIRP2   340000 perm   225 sec   (1512 perm/sec)   p_kst 1.897059e-03   p_cons 2.224000e-01   p_joint 2.717647e-03

Joint ci ratio: 1.166837e-01	ci left: 3.026682e-03	ci right 3.404474e-03	k: 1124	n:350000
Cons ci ratio: 1.239067e-02	ci left: 2.209947e-01	ci right 2.237528e-01	k: 77830	n:350000
KS ci ratio: 1.518664e-01	ci left: 1.755690e-03	ci right 2.046941e-03	k: 664	n:350000
XIRP2   350000 perm   233 sec   (1503 perm/sec)   p_kst 1.897143e-03   p_cons 2.223714e-01   p_joint 3.211429e-03

Joint ci ratio: 1.155104e-01	ci left: 3.004639e-03	ci right 3.375651e-03	k: 1147	n:360000
Cons ci ratio: 1.222117e-02	ci left: 2.209066e-01	ci right 2.236257e-01	k: 80015	n:360000
KS ci ratio: 1.505159e-01	ci left: 1.738992e-03	ci right 2.024677e-03	k: 676	n:360000
XIRP2   360000 perm   241 sec   (1495 perm/sec)   p_kst 1.877778e-03   p_cons 2.222639e-01   p_joint 3.186111e-03

Joint ci ratio: 1.144698e-01	ci left: 2.978555e-03	ci right 3.342809e-03	k: 1168	n:370000
Cons ci ratio: 1.205354e-02	ci left: 2.209638e-01	ci right 2.236460e-01	k: 82252	n:370000
KS ci ratio: 1.479158e-01	ci left: 1.754437e-03	ci right 2.037239e-03	k: 700	n:370000
XIRP2   370000 perm   249 sec   (1487 perm/sec)   p_kst 1.891892e-03   p_cons 2.223027e-01   p_joint 3.156757e-03

Joint ci ratio: 1.153690e-01	ci left: 2.854154e-03	ci right 3.206123e-03	k: 1150	n:380000
Cons ci ratio: 1.189760e-02	ci left: 2.208738e-01	ci right 2.235199e-01	k: 84434	n:380000
KS ci ratio: 1.453456e-01	ci left: 1.771644e-03	ci right 2.051828e-03	k: 725	n:380000
XIRP2   380000 perm   257 sec   (1479 perm/sec)   p_kst 1.907895e-03   p_cons 2.221947e-01   p_joint 3.026316e-03

Joint ci ratio: 1.143811e-01	ci left: 2.830778e-03	ci right 3.176672e-03	k: 1170	n:390000
Cons ci ratio: 1.175113e-02	ci left: 2.206837e-01	ci right 2.232948e-01	k: 86575	n:390000
KS ci ratio: 1.439651e-01	ci left: 1.760815e-03	ci right 2.036413e-03	k: 739	n:390000
XIRP2   390000 perm   265 sec   (1470 perm/sec)   p_kst 1.894872e-03   p_cons 2.219872e-01   p_joint 3.000000e-03

Joint ci ratio: 1.127553e-01	ci left: 2.842594e-03	ci right 3.184668e-03	k: 1204	n:400000
Cons ci ratio: 1.160490e-02	ci left: 2.206530e-01	ci right 2.232310e-01	k: 88776	n:400000
KS ci ratio: 1.426232e-01	ci left: 1.750539e-03	ci right 2.021758e-03	k: 753	n:400000
XIRP2   400000 perm   274 sec   (1461 perm/sec)   p_kst 1.882500e-03   p_cons 2.219400e-01   p_joint 3.010000e-03

Joint ci ratio: 1.145367e-01	ci left: 2.685572e-03	ci right 3.014200e-03	k: 1167	n:410000
Cons ci ratio: 1.146634e-02	ci left: 2.205534e-01	ci right 2.230993e-01	k: 90948	n:410000
KS ci ratio: 1.415954e-01	ci left: 1.733717e-03	ci right 2.000231e-03	k: 764	n:410000
XIRP2   410000 perm   282 sec   (1453 perm/sec)   p_kst 1.863415e-03   p_cons 2.218244e-01   p_joint 2.846341e-03

Joint ci ratio: 1.001325e-01	ci left: 3.453610e-03	ci right 3.819957e-03	k: 1526	n:420000
Cons ci ratio: 1.132927e-02	ci left: 2.205609e-01	ci right 2.230763e-01	k: 93163	n:420000
KS ci ratio: 1.396018e-01	ci left: 1.742977e-03	ci right 2.006828e-03	k: 786	n:420000
XIRP2   420000 perm   291 sec   (1445 perm/sec)   p_kst 1.871429e-03   p_cons 2.218167e-01   p_joint 3.633333e-03

Joint ci ratio: 1.038540e-01	ci left: 3.130775e-03	ci right 3.475972e-03	k: 1419	n:430000
Cons ci ratio: 1.119791e-02	ci left: 2.205404e-01	ci right 2.230262e-01	k: 95366	n:430000
KS ci ratio: 1.390747e-01	ci left: 1.715908e-03	ci right 1.974599e-03	k: 792	n:430000
XIRP2   430000 perm   299 sec   (1437 perm/sec)   p_kst 1.841860e-03   p_cons 2.217814e-01   p_joint 3.300000e-03

Joint ci ratio: 1.041526e-01	ci left: 3.041905e-03	ci right 3.378326e-03	k: 1411	n:440000
Cons ci ratio: 1.107094e-02	ci left: 2.205232e-01	ci right 2.229804e-01	k: 97570	n:440000
KS ci ratio: 1.374379e-01	ci left: 1.718599e-03	ci right 1.974396e-03	k: 811	n:440000
XIRP2   440000 perm   308 sec   (1429 perm/sec)   p_kst 1.843182e-03   p_cons 2.217500e-01   p_joint 3.206818e-03

Joint ci ratio: 1.065286e-01	ci left: 2.840143e-03	ci right 3.161865e-03	k: 1349	n:450000
Cons ci ratio: 1.094756e-02	ci left: 2.205269e-01	ci right 2.229566e-01	k: 99783	n:450000
KS ci ratio: 1.365174e-01	ci left: 1.704013e-03	ci right 1.955803e-03	k: 822	n:450000
XIRP2   450000 perm   317 sec   (1421 perm/sec)   p_kst 1.826667e-03   p_cons 2.217400e-01   p_joint 2.997778e-03

Joint ci ratio: 1.059045e-01	ci left: 2.812257e-03	ci right 3.128837e-03	k: 1365	n:460000
Cons ci ratio: 1.083230e-02	ci left: 2.204005e-01	ci right 2.228030e-01	k: 101936	n:460000
KS ci ratio: 1.349683e-01	ci left: 1.706872e-03	ci right 1.955992e-03	k: 841	n:460000
XIRP2   460000 perm   325 sec   (1414 perm/sec)   p_kst 1.828261e-03   p_cons 2.216000e-01   p_joint 2.967391e-03

Joint ci ratio: 1.056754e-01	ci left: 2.764846e-03	ci right 3.075374e-03	k: 1371	n:470000
Cons ci ratio: 1.072068e-02	ci left: 2.202774e-01	ci right 2.226537e-01	k: 104088	n:470000
KS ci ratio: 1.337824e-01	ci left: 1.701397e-03	ci right 1.947363e-03	k: 856	n:470000
XIRP2   470000 perm   334 sec   (1407 perm/sec)   p_kst 1.821277e-03   p_cons 2.214638e-01   p_joint 2.917021e-03

Joint ci ratio: 1.134463e-01	ci left: 2.340453e-03	ci right 2.623939e-03	k: 1190	n:480000
Cons ci ratio: 1.060750e-02	ci left: 2.203197e-01	ci right 2.226712e-01	k: 106317	n:480000
KS ci ratio: 1.329330e-01	ci left: 1.688102e-03	ci right 1.930474e-03	k: 867	n:480000
XIRP2   480000 perm   343 sec   (1399 perm/sec)   p_kst 1.806250e-03   p_cons 2.214937e-01   p_joint 2.479167e-03

Joint ci ratio: 1.121816e-01	ci left: 2.346236e-03	ci right 2.627045e-03	k: 1217	n:490000
Cons ci ratio: 1.050087e-02	ci left: 2.202605e-01	ci right 2.225877e-01	k: 108497	n:490000
KS ci ratio: 1.314272e-01	ci left: 1.693118e-03	ci right 1.933242e-03	k: 887	n:490000
XIRP2   490000 perm   352 sec   (1392 perm/sec)   p_kst 1.810204e-03   p_cons 2.214224e-01   p_joint 2.483673e-03

Joint ci ratio: 1.110925e-01	ci left: 2.345971e-03	ci right 2.623844e-03	k: 1241	n:500000
Cons ci ratio: 1.039722e-02	ci left: 2.202099e-01	ci right 2.225134e-01	k: 110680	n:500000
KS ci ratio: 1.296856e-01	ci left: 1.705689e-03	ci right 1.944143e-03	k: 911	n:500000
XIRP2   500000 perm   361 sec   (1386 perm/sec)   p_kst 1.822000e-03   p_cons 2.213600e-01   p_joint 2.482000e-03

Joint ci ratio: 1.108272e-01	ci left: 2.311407e-03	ci right 2.584490e-03	k: 1247	n:510000
Cons ci ratio: 1.029564e-02	ci left: 2.201926e-01	ci right 2.224733e-01	k: 112879	n:510000
KS ci ratio: 1.284245e-01	ci left: 1.706399e-03	ci right 1.942456e-03	k: 929	n:510000
XIRP2   510000 perm   370 sec   (1379 perm/sec)   p_kst 1.821569e-03   p_cons 2.213314e-01   p_joint 2.445098e-03

Joint ci ratio: 1.120514e-01	ci left: 2.216475e-03	ci right 2.481426e-03	k: 1220	n:520000
Cons ci ratio: 1.019629e-02	ci left: 2.201992e-01	ci right 2.224578e-01	k: 115090	n:520000
KS ci ratio: 1.267316e-01	ci left: 1.720127e-03	ci right 1.954710e-03	k: 954	n:520000
XIRP2   520000 perm   379 sec   (1372 perm/sec)   p_kst 1.834615e-03   p_cons 2.213269e-01   p_joint 2.346154e-03

Joint ci ratio: 1.119620e-01	ci left: 2.178320e-03	ci right 2.438489e-03	k: 1222	n:530000
Cons ci ratio: 1.009894e-02	ci left: 2.202338e-01	ci right 2.224711e-01	k: 117316	n:530000
KS ci ratio: 1.256186e-01	ci left: 1.718734e-03	ci right 1.950916e-03	k: 971	n:530000
XIRP2   530000 perm   388 sec   (1366 perm/sec)   p_kst 1.832075e-03   p_cons 2.213509e-01   p_joint 2.305660e-03

Joint ci ratio: 1.130347e-01	ci left: 2.096582e-03	ci right 2.349547e-03	k: 1199	n:540000
Cons ci ratio: 1.000277e-02	ci left: 2.203209e-01	ci right 2.225376e-01	k: 119571	n:540000
KS ci ratio: 1.237843e-01	ci left: 1.738936e-03	ci right 1.970165e-03	k: 1000	n:540000
XIRP2   540000 perm   397 sec   (1359 perm/sec)   p_kst 1.851852e-03   p_cons 2.214278e-01   p_joint 2.220370e-03

Joint ci ratio: 9.838283e-02	ci left: 2.736544e-03	ci right 3.021460e-03	k: 1582	n:550000
Cons ci ratio: 9.910959e-03	ci left: 2.203469e-01	ci right 2.225434e-01	k: 121794	n:550000
KS ci ratio: 1.226863e-01	ci left: 1.739037e-03	ci right 1.968080e-03	k: 1018	n:550000
XIRP2   550000 perm   407 sec   (1353 perm/sec)   p_kst 1.850909e-03   p_cons 2.214436e-01   p_joint 2.876364e-03

Joint ci ratio: 9.851026e-02	ci left: 2.680706e-03	ci right 2.960191e-03	k: 1578	n:560000
Cons ci ratio: 9.824077e-03	ci left: 2.202864e-01	ci right 2.224629e-01	k: 123969	n:560000
KS ci ratio: 1.217935e-01	ci left: 1.733949e-03	ci right 1.960540e-03	k: 1033	n:560000
XIRP2   560000 perm   416 sec   (1347 perm/sec)   p_kst 1.844643e-03   p_cons 2.213732e-01   p_joint 2.817857e-03

Joint ci ratio: 9.792367e-02	ci left: 2.666190e-03	ci right 2.942411e-03	k: 1597	n:570000
Cons ci ratio: 9.739193e-03	ci left: 2.202369e-01	ci right 2.223940e-01	k: 126149	n:570000
KS ci ratio: 1.209777e-01	ci left: 1.727344e-03	ci right 1.951452e-03	k: 1047	n:570000
XIRP2   570000 perm   426 sec   (1339 perm/sec)   p_kst 1.836842e-03   p_cons 2.213140e-01   p_joint 2.801754e-03

Joint ci ratio: 9.808003e-02	ci left: 2.611808e-03	ci right 2.882852e-03	k: 1592	n:580000
Cons ci ratio: 9.655456e-03	ci left: 2.202253e-01	ci right 2.223637e-01	k: 128350	n:580000
KS ci ratio: 1.197833e-01	ci left: 1.732679e-03	ci right 1.955102e-03	k: 1068	n:580000
XIRP2   580000 perm   435 sec   (1333 perm/sec)   p_kst 1.841379e-03   p_cons 2.212931e-01   p_joint 2.744828e-03

Joint ci ratio: 9.731956e-02	ci left: 2.608878e-03	ci right 2.877398e-03	k: 1617	n:590000
Cons ci ratio: 9.575209e-03	ci left: 2.201651e-01	ci right 2.222851e-01	k: 130522	n:590000
KS ci ratio: 1.190070e-01	ci left: 1.726332e-03	ci right 1.946403e-03	k: 1082	n:590000
XIRP2   590000 perm   445 sec   (1327 perm/sec)   p_kst 1.833898e-03   p_cons 2.212237e-01   p_joint 2.740678e-03

Joint ci ratio: 9.672420e-02	ci left: 2.597920e-03	ci right 2.863584e-03	k: 1637	n:600000
Cons ci ratio: 9.498492e-03	ci left: 2.200505e-01	ci right 2.221522e-01	k: 132660	n:600000
KS ci ratio: 1.184079e-01	ci left: 1.715348e-03	ci right 1.932841e-03	k: 1093	n:600000
XIRP2   600000 perm   454 sec   (1321 perm/sec)   p_kst 1.821667e-03   p_cons 2.211000e-01   p_joint 2.728333e-03

Joint ci ratio: 9.596567e-02	ci left: 2.596927e-03	ci right 2.860290e-03	k: 1663	n:610000
Cons ci ratio: 9.419373e-03	ci left: 2.200935e-01	ci right 2.221780e-01	k: 134892	n:610000
KS ci ratio: 1.174457e-01	ci left: 1.715865e-03	ci right 1.931533e-03	k: 1111	n:610000
XIRP2   610000 perm   464 sec   (1314 perm/sec)   p_kst 1.821311e-03   p_cons 2.211344e-01   p_joint 2.726230e-03

Joint ci ratio: 9.608365e-02	ci left: 2.548741e-03	ci right 2.807553e-03	k: 1659	n:620000
Cons ci ratio: 9.340362e-03	ci left: 2.202028e-01	ci right 2.222708e-01	k: 137166	n:620000
KS ci ratio: 1.166100e-01	ci left: 1.713241e-03	ci right 1.926941e-03	k: 1127	n:620000
XIRP2   620000 perm   474 sec   (1308 perm/sec)   p_kst 1.817742e-03   p_cons 2.212355e-01   p_joint 2.675806e-03

Joint ci ratio: 9.548204e-02	ci left: 2.540820e-03	ci right 2.797121e-03	k: 1680	n:630000
Cons ci ratio: 9.263221e-03	ci left: 2.203119e-01	ci right 2.223637e-01	k: 139442	n:630000
KS ci ratio: 1.155896e-01	ci left: 1.716871e-03	ci right 1.929022e-03	k: 1147	n:630000
XIRP2   630000 perm   484 sec   (1302 perm/sec)   p_kst 1.820635e-03   p_cons 2.213365e-01   p_joint 2.666667e-03

Joint ci ratio: 9.582758e-02	ci left: 2.482814e-03	ci right 2.734222e-03	k: 1668	n:640000
Cons ci ratio: 9.191250e-03	ci left: 2.202944e-01	ci right 2.223300e-01	k: 141639	n:640000
KS ci ratio: 1.143506e-01	ci left: 1.727984e-03	ci right 1.939066e-03	k: 1172	n:640000
XIRP2   640000 perm   494 sec   (1296 perm/sec)   p_kst 1.831250e-03   p_cons 2.213109e-01   p_joint 2.606250e-03

Joint ci ratio: 9.568592e-02	ci left: 2.452123e-03	ci right 2.700035e-03	k: 1673	n:650000
Cons ci ratio: 9.118569e-03	ci left: 2.203666e-01	ci right 2.223867e-01	k: 143894	n:650000
KS ci ratio: 1.131979e-01	ci left: 1.737273e-03	ci right 1.947207e-03	k: 1196	n:650000
XIRP2   650000 perm   504 sec   (1290 perm/sec)   p_kst 1.840000e-03   p_cons 2.213754e-01   p_joint 2.573846e-03

Joint ci ratio: 9.545939e-02	ci left: 2.426800e-03	ci right 2.671538e-03	k: 1681	n:660000
Cons ci ratio: 9.049177e-03	ci left: 2.203761e-01	ci right 2.223809e-01	k: 146109	n:660000
KS ci ratio: 1.124955e-01	ci left: 1.733036e-03	ci right 1.941072e-03	k: 1211	n:660000
XIRP2   660000 perm   514 sec   (1284 perm/sec)   p_kst 1.834848e-03   p_cons 2.213773e-01   p_joint 2.546970e-03

Joint ci ratio: 9.439812e-02	ci left: 2.445950e-03	ci right 2.689726e-03	k: 1719	n:670000
Cons ci ratio: 8.984340e-03	ci left: 2.202707e-01	ci right 2.222601e-01	k: 148247	n:670000
KS ci ratio: 1.115786e-01	ci left: 1.736184e-03	ci right 1.942788e-03	k: 1231	n:670000
XIRP2   670000 perm   524 sec   (1278 perm/sec)   p_kst 1.837313e-03   p_cons 2.212642e-01   p_joint 2.565672e-03

Joint ci ratio: 9.621131e-02	ci left: 2.318098e-03	ci right 2.553819e-03	k: 1655	n:680000
Cons ci ratio: 8.916461e-03	ci left: 2.203387e-01	ci right 2.223136e-01	k: 150501	n:680000
KS ci ratio: 1.108612e-01	ci left: 1.733527e-03	ci right 1.938401e-03	k: 1247	n:680000
XIRP2   680000 perm   535 sec   (1272 perm/sec)   p_kst 1.833824e-03   p_cons 2.213250e-01   p_joint 2.433824e-03

Joint ci ratio: 8.866773e-02	ci left: 2.699362e-03	ci right 2.951217e-03	k: 1948	n:690000
Cons ci ratio: 8.851995e-03	ci left: 2.203311e-01	ci right 2.222915e-01	k: 152704	n:690000
KS ci ratio: 1.102012e-01	ci left: 1.729541e-03	ci right 1.932649e-03	k: 1262	n:690000
XIRP2   690000 perm   545 sec   (1265 perm/sec)   p_kst 1.828986e-03   p_cons 2.213101e-01   p_joint 2.823188e-03

Joint ci ratio: 8.777089e-02	ci left: 2.716683e-03	ci right 2.967459e-03	k: 1988	n:700000
Cons ci ratio: 8.789636e-03	ci left: 2.202952e-01	ci right 2.222414e-01	k: 154887	n:700000
KS ci ratio: 1.091684e-01	ci left: 1.738179e-03	ci right 1.940265e-03	k: 1286	n:700000
XIRP2   700000 perm   556 sec   (1259 perm/sec)   p_kst 1.837143e-03   p_cons 2.212671e-01   p_joint 2.840000e-03

Joint ci ratio: 8.783910e-02	ci left: 2.674285e-03	ci right 2.921349e-03	k: 1985	n:710000
Cons ci ratio: 8.728042e-03	ci left: 2.202814e-01	ci right 2.222138e-01	k: 157085	n:710000
KS ci ratio: 1.085380e-01	ci left: 1.734249e-03	ci right 1.934639e-03	k: 1301	n:710000
XIRP2   710000 perm   567 sec   (1253 perm/sec)   p_kst 1.832394e-03   p_cons 2.212465e-01   p_joint 2.795775e-03

Joint ci ratio: 8.737877e-02	ci left: 2.665669e-03	ci right 2.910581e-03	k: 2006	n:720000
Cons ci ratio: 8.664791e-03	ci left: 2.203846e-01	ci right 2.223038e-01	k: 159367	n:720000
KS ci ratio: 1.081242e-01	ci left: 1.723674e-03	ci right 1.922035e-03	k: 1311	n:720000
XIRP2   720000 perm   578 sec   (1247 perm/sec)   p_kst 1.820833e-03   p_cons 2.213431e-01   p_joint 2.786111e-03

Joint ci ratio: 8.673282e-02	ci left: 2.669355e-03	ci right 2.912700e-03	k: 2036	n:730000
Cons ci ratio: 8.604706e-03	ci left: 2.204124e-01	ci right 2.223185e-01	k: 161596	n:730000
KS ci ratio: 1.072689e-01	ci left: 1.728055e-03	ci right 1.925247e-03	k: 1332	n:730000
XIRP2   730000 perm   589 sec   (1240 perm/sec)   p_kst 1.824658e-03   p_cons 2.213644e-01   p_joint 2.789041e-03

Joint ci ratio: 8.618465e-02	ci left: 2.667658e-03	ci right 2.909234e-03	k: 2062	n:740000
Cons ci ratio: 8.545955e-03	ci left: 2.204356e-01	ci right 2.223288e-01	k: 163822	n:740000
KS ci ratio: 1.067500e-01	ci left: 1.721800e-03	ci right 1.917268e-03	k: 1345	n:740000
XIRP2   740000 perm   599 sec   (1235 perm/sec)   p_kst 1.817568e-03   p_cons 2.213811e-01   p_joint 2.786486e-03

Joint ci ratio: 8.439989e-02	ci left: 2.746924e-03	ci right 2.990274e-03	k: 2150	n:750000
Cons ci ratio: 8.487866e-03	ci left: 2.204794e-01	ci right 2.223601e-01	k: 166064	n:750000
KS ci ratio: 1.059267e-01	ci left: 1.726098e-03	ci right 1.920449e-03	k: 1366	n:750000
XIRP2   750000 perm   610 sec   (1229 perm/sec)   p_kst 1.821333e-03   p_cons 2.214187e-01   p_joint 2.866667e-03

Joint ci ratio: 8.381734e-02	ci left: 2.749424e-03	ci right 2.991232e-03	k: 2180	n:760000
Cons ci ratio: 8.432844e-03	ci left: 2.204446e-01	ci right 2.223128e-01	k: 168247	n:760000
KS ci ratio: 1.053123e-01	ci left: 1.723883e-03	ci right 1.916788e-03	k: 1382	n:760000
XIRP2   760000 perm   621 sec   (1223 perm/sec)   p_kst 1.818421e-03   p_cons 2.213776e-01   p_joint 2.868421e-03

Joint ci ratio: 8.353134e-02	ci left: 2.732789e-03	ci right 2.972274e-03	k: 2195	n:770000
Cons ci ratio: 8.380552e-03	ci left: 2.203421e-01	ci right 2.221977e-01	k: 170377	n:770000
KS ci ratio: 1.046711e-01	ci left: 1.722993e-03	ci right 1.914553e-03	k: 1399	n:770000
XIRP2   770000 perm   632 sec   (1218 perm/sec)   p_kst 1.816883e-03   p_cons 2.212688e-01   p_joint 2.850649e-03

Joint ci ratio: 8.287318e-02	ci left: 2.741692e-03	ci right 2.979972e-03	k: 2230	n:780000
Cons ci ratio: 8.326710e-03	ci left: 2.203459e-01	ci right 2.221895e-01	k: 172588	n:780000
KS ci ratio: 1.040782e-01	ci left: 1.720880e-03	ci right 1.911055e-03	k: 1415	n:780000
XIRP2   780000 perm   643 sec   (1212 perm/sec)   p_kst 1.814103e-03   p_cons 2.212667e-01   p_joint 2.858974e-03

Joint ci ratio: 8.237630e-02	ci left: 2.740458e-03	ci right 2.977135e-03	k: 2257	n:790000
Cons ci ratio: 8.273801e-03	ci left: 2.203534e-01	ci right 2.221854e-01	k: 174802	n:790000
KS ci ratio: 1.033507e-01	ci left: 1.723757e-03	ci right 1.912838e-03	k: 1435	n:790000
XIRP2   790000 perm   655 sec   (1207 perm/sec)   p_kst 1.816456e-03   p_cons 2.212684e-01   p_joint 2.856962e-03

Joint ci ratio: 7.524310e-02	ci left: 3.253994e-03	ci right 3.509623e-03	k: 2704	n:800000
Cons ci ratio: 8.221679e-03	ci left: 2.203695e-01	ci right 2.221900e-01	k: 177023	n:800000
KS ci ratio: 1.028508e-01	ci left: 1.719258e-03	ci right 1.906878e-03	k: 1449	n:800000
XIRP2   800000 perm   666 sec   (1201 perm/sec)   p_kst 1.811250e-03   p_cons 2.212787e-01   p_joint 3.380000e-03

Joint ci ratio: 7.495332e-02	ci left: 3.239259e-03	ci right 3.492708e-03	k: 2725	n:810000
Cons ci ratio: 8.170589e-03	ci left: 2.203828e-01	ci right 2.221920e-01	k: 179242	n:810000
KS ci ratio: 1.020791e-01	ci left: 1.724498e-03	ci right 1.911193e-03	k: 1471	n:810000
XIRP2   810000 perm   678 sec   (1195 perm/sec)   p_kst 1.816049e-03   p_cons 2.212864e-01   p_joint 3.364198e-03

Joint ci ratio: 6.966556e-02	ci left: 3.712312e-03	ci right 3.981455e-03	k: 3153	n:820000
Cons ci ratio: 8.119233e-03	ci left: 2.204469e-01	ci right 2.222453e-01	k: 181503	n:820000
KS ci ratio: 1.012566e-01	ci left: 1.731992e-03	ci right 1.917897e-03	k: 1495	n:820000
XIRP2   820000 perm   689 sec   (1190 perm/sec)   p_kst 1.823171e-03   p_cons 2.213451e-01   p_joint 3.845122e-03

Joint ci ratio: 6.978945e-02	ci left: 3.654560e-03	ci right 3.920006e-03	k: 3142	n:830000
Cons ci ratio: 8.071598e-03	ci left: 2.203917e-01	ci right 2.221790e-01	k: 183666	n:830000
KS ci ratio: 1.002886e-01	ci left: 1.745184e-03	ci right 1.930610e-03	k: 1524	n:830000
XIRP2   830000 perm   701 sec   (1184 perm/sec)   p_kst 1.836145e-03   p_cons 2.212843e-01   p_joint 3.785542e-03

Joint ci ratio: 7.010517e-02	ci left: 3.578298e-03	ci right 3.839429e-03	k: 3114	n:840000
Cons ci ratio: 8.024597e-03	ci left: 2.203461e-01	ci right 2.221225e-01	k: 185836	n:840000
KS ci ratio: 9.976674e-02	ci left: 1.742979e-03	ci right 1.927150e-03	k: 1540	n:840000
XIRP2   840000 perm   712 sec   (1179 perm/sec)   p_kst 1.833333e-03   p_cons 2.212333e-01   p_joint 3.707143e-03

Outputting figure to mutsig2_images.part000000000191/XIRP2.85_12236_840000_0.0018333_0.22123_0.0037071.png
                gene_name: XIRP2
               theta_stop: 0.100 
                    nperm: 840000 
                     p_ks: 0.0018 
        ci_ks_bounds_left: 0.0017 
       ci_ks_bounds_right: 0.0019 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0036 
    ci_joint_bounds_right: 0.0038 

Current progress: 2 percent done.
WNK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
Cons ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
KS ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
WNK3   10000 perm   3 sec   (3793 perm/sec)   p_kst 3.688000e-01   p_cons 1.310000e-02   p_joint 6.100000e-02

Joint ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
Cons ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
KS ci ratio: 3.429034e-02	ci left: 3.883652e-01	ci right 4.019653e-01	k: 7903	n:20000
WNK3   20000 perm   6 sec   (3522 perm/sec)   p_kst 3.951500e-01   p_cons 1.325000e-02   p_joint 6.375000e-02

Joint ci ratio: 9.927831e-02	ci left: 4.694235e-02	ci right 5.187871e-02	k: 1481	n:30000
Cons ci ratio: 2.011555e-01	ci left: 1.124182e-02	ci right 1.378722e-02	k: 374	n:30000
KS ci ratio: 2.805653e-02	ci left: 3.886307e-01	ci right 3.997231e-01	k: 11825	n:30000
WNK3   30000 perm   9 sec   (3414 perm/sec)   p_kst 3.941667e-01   p_cons 1.246667e-02   p_joint 4.936667e-02

Joint ci ratio: 9.485163e-02	ci left: 3.900438e-02	ci right 4.291261e-02	k: 1637	n:40000
Cons ci ratio: 1.714496e-01	ci left: 1.179319e-02	ci right 1.402836e-02	k: 515	n:40000
KS ci ratio: 2.422277e-02	ci left: 3.908532e-01	ci right 4.004619e-01	k: 15826	n:40000
WNK3   40000 perm   12 sec   (3340 perm/sec)   p_kst 3.956500e-01   p_cons 1.287500e-02   p_joint 4.092500e-02

Joint ci ratio: 8.374583e-02	ci left: 4.021923e-02	ci right 4.375420e-02	k: 2098	n:50000
Cons ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
KS ci ratio: 2.165348e-02	ci left: 3.916295e-01	ci right 4.002226e-01	k: 19796	n:50000
WNK3   50000 perm   15 sec   (3278 perm/sec)   p_kst 3.959200e-01   p_cons 1.254000e-02   p_joint 4.196000e-02

Joint ci ratio: 7.124374e-02	ci left: 4.631949e-02	ci right 4.975773e-02	k: 2881	n:60000
Cons ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
KS ci ratio: 1.975953e-02	ci left: 3.921833e-01	ci right 4.000267e-01	k: 23766	n:60000
WNK3   60000 perm   19 sec   (3233 perm/sec)   p_kst 3.961000e-01   p_cons 1.241667e-02   p_joint 4.801667e-02

Joint ci ratio: 6.620060e-02	ci left: 4.611871e-02	ci right 4.929035e-02	k: 3338	n:70000
Cons ci ratio: 1.304115e-01	ci left: 1.191124e-02	ci right 1.358666e-02	k: 891	n:70000
KS ci ratio: 1.914809e-02	ci left: 3.708985e-01	ci right 3.780834e-01	k: 26214	n:70000
WNK3   70000 perm   22 sec   (3191 perm/sec)   p_kst 3.744857e-01   p_cons 1.272857e-02   p_joint 4.768571e-02

Joint ci ratio: 6.371643e-02	ci left: 4.373378e-02	ci right 4.662432e-02	k: 3613	n:80000
Cons ci ratio: 1.218333e-01	ci left: 1.199613e-02	ci right 1.356450e-02	k: 1021	n:80000
KS ci ratio: 1.794729e-02	ci left: 3.701963e-01	ci right 3.769129e-01	k: 29884	n:80000
WNK3   80000 perm   25 sec   (3154 perm/sec)   p_kst 3.735500e-01   p_cons 1.276250e-02   p_joint 4.516250e-02

Joint ci ratio: 5.253643e-02	ci left: 5.672303e-02	ci right 5.979440e-02	k: 5242	n:90000
Cons ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
KS ci ratio: 1.622518e-02	ci left: 3.902064e-01	ci right 3.966005e-01	k: 35406	n:90000
WNK3   90000 perm   29 sec   (3120 perm/sec)   p_kst 3.934000e-01   p_cons 1.264444e-02   p_joint 5.824444e-02

Joint ci ratio: 5.338452e-02	ci left: 4.979260e-02	ci right 5.253350e-02	k: 5115	n:100000
Cons ci ratio: 1.106728e-01	ci left: 1.170384e-02	ci right 1.308466e-02	k: 1238	n:100000
KS ci ratio: 1.539194e-02	ci left: 3.903904e-01	ci right 3.964558e-01	k: 39342	n:100000
WNK3   100000 perm   32 sec   (3085 perm/sec)   p_kst 3.934200e-01   p_cons 1.238000e-02   p_joint 5.115000e-02

Joint ci ratio: 5.123980e-02	ci left: 4.922227e-02	ci right 5.181968e-02	k: 5556	n:110000
Cons ci ratio: 1.052841e-01	ci left: 1.178979e-02	ci right 1.310883e-02	k: 1368	n:110000
KS ci ratio: 1.467433e-02	ci left: 3.905750e-01	ci right 3.963579e-01	k: 43281	n:110000
WNK3   110000 perm   36 sec   (3052 perm/sec)   p_kst 3.934636e-01   p_cons 1.243636e-02   p_joint 5.050909e-02

Joint ci ratio: 4.888108e-02	ci left: 4.962194e-02	ci right 5.211649e-02	k: 6103	n:120000
Cons ci ratio: 1.008175e-01	ci left: 1.181402e-02	ci right 1.307637e-02	k: 1492	n:120000
KS ci ratio: 1.404683e-02	ci left: 3.907926e-01	ci right 3.963292e-01	k: 47227	n:120000
WNK3   120000 perm   40 sec   (3018 perm/sec)   p_kst 3.935583e-01   p_cons 1.243333e-02   p_joint 5.085833e-02

Joint ci ratio: 5.574316e-02	ci left: 3.562369e-02	ci right 3.767396e-02	k: 4763	n:130000
Cons ci ratio: 1.012443e-01	ci left: 1.082249e-02	ci right 1.198408e-02	k: 1481	n:130000
KS ci ratio: 1.347961e-02	ci left: 3.914730e-01	ci right 3.967933e-01	k: 51237	n:130000
WNK3   130000 perm   44 sec   (2985 perm/sec)   p_kst 3.941308e-01   p_cons 1.139231e-02   p_joint 3.663846e-02

Joint ci ratio: 5.597106e-02	ci left: 3.290175e-02	ci right 3.480333e-02	k: 4738	n:140000
Cons ci ratio: 9.790333e-02	ci left: 1.076683e-02	ci right 1.188212e-02	k: 1584	n:140000
KS ci ratio: 1.298973e-02	ci left: 3.915532e-01	ci right 3.966797e-01	k: 55176	n:140000
WNK3   140000 perm   47 sec   (2951 perm/sec)   p_kst 3.941143e-01   p_cons 1.131429e-02   p_joint 3.384286e-02

Outputting figure to mutsig2_images.part000000000191/WNK3.12_5495_140000_0.39411_0.011314_0.033843.png
                gene_name: WNK3
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 4 percent done.
WRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
WRN   10000 perm   2 sec   (4492 perm/sec)   p_kst 9.755000e-01   p_cons 7.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WRN.12_4435_10000_0.9755_0.7808_1.png
                gene_name: WRN
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
WSCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
WSCD2   10000 perm   2 sec   (4725 perm/sec)   p_kst 2.616000e-01   p_cons 1.352000e-01   p_joint 2.069000e-01

Outputting figure to mutsig2_images.part000000000191/WSCD2.12_1730_10000_0.2616_0.1352_0.2069.png
                gene_name: WSCD2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 7 percent done.
XDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
Cons ci ratio: 8.478738e-02	ci left: 1.685812e-01	ci right 1.836080e-01	k: 1760	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
XDH   10000 perm   2 sec   (4705 perm/sec)   p_kst 8.443000e-01   p_cons 1.760000e-01   p_joint 4.836000e-01

Outputting figure to mutsig2_images.part000000000191/XDH.11_4146_10000_0.8443_0.176_0.4836.png
                gene_name: XDH
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 9 percent done.
XIRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
XIRP1   10000 perm   2 sec   (4329 perm/sec)   p_kst 4.741000e-01   p_cons 3.024000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000191/XIRP1.10_5536_10000_0.4741_0.3024_0.5298.png
                gene_name: XIRP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 11 percent done.
WNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
Cons ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
KS ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
WNK1   10000 perm   3 sec   (3587 perm/sec)   p_kst 3.175000e-01   p_cons 2.330000e-01   p_joint 5.258000e-01

Outputting figure to mutsig2_images.part000000000191/WNK1.9_8763_10000_0.3175_0.233_0.5258.png
                gene_name: WNK1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 12 percent done.
WIPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
Cons ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
KS ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
WIPF1   10000 perm   2 sec   (5488 perm/sec)   p_kst 1.785000e-01   p_cons 8.615000e-01   p_joint 3.908000e-01

Outputting figure to mutsig2_images.part000000000191/WIPF1.8_1540_10000_0.1785_0.8615_0.3908.png
                gene_name: WIPF1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 14 percent done.
WNK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
KS ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
WNK4   10000 perm   2 sec   (4999 perm/sec)   p_kst 4.754000e-01   p_cons 7.017000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000191/WNK4.8_3808_10000_0.4754_0.7017_0.5864.png
                gene_name: WNK4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 16 percent done.
WT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
WT1   10000 perm   2 sec   (5555 perm/sec)   p_kst 1.000000e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
WT1   20000 perm   4 sec   (5013 perm/sec)   p_kst 2.500000e-04   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
WT1   30000 perm   6 sec   (4800 perm/sec)   p_kst 2.666667e-04   p_cons 5.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 8.763085e-01	ci left: 2.860045e-04	ci right 7.416724e-04	k: 19	n:40000
KS ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
WT1   40000 perm   9 sec   (4659 perm/sec)   p_kst 3.000000e-04   p_cons 4.750000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 7.999666e-01	ci left: 2.916222e-04	ci right 6.901464e-04	k: 23	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
WT1   50000 perm   11 sec   (4557 perm/sec)   p_kst 2.400000e-04   p_cons 4.600000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
WT1   60000 perm   13 sec   (4478 perm/sec)   p_kst 2.500000e-04   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 6.624305e-01	ci left: 3.363940e-04	ci right 6.786715e-04	k: 34	n:70000
KS ci ratio: 8.764072e-01	ci left: 1.634254e-04	ci right 4.238370e-04	k: 19	n:70000
WT1   70000 perm   16 sec   (4404 perm/sec)   p_kst 2.714286e-04   p_cons 4.857143e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 6.442910e-01	ci left: 3.151937e-04	ci right 6.229358e-04	k: 36	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
WT1   80000 perm   18 sec   (4333 perm/sec)   p_kst 2.750000e-04   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 6.196652e-01	ci left: 3.081599e-04	ci right 5.923338e-04	k: 39	n:90000
KS ci ratio: 7.278044e-01	ci left: 2.067407e-04	ci right 4.496110e-04	k: 28	n:90000
WT1   90000 perm   21 sec   (4264 perm/sec)   p_kst 3.111111e-04   p_cons 4.333333e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
KS ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
WT1   100000 perm   24 sec   (4198 perm/sec)   p_kst 3.000000e-04   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 5.145832e-01	ci left: 3.924887e-04	ci right 6.713132e-04	k: 57	n:110000
KS ci ratio: 6.532234e-01	ci left: 2.216350e-04	ci right 4.424864e-04	k: 35	n:110000
WT1   110000 perm   27 sec   (4132 perm/sec)   p_kst 3.181818e-04   p_cons 5.181818e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 5.017749e-01	ci left: 3.815737e-04	ci right 6.435529e-04	k: 60	n:120000
KS ci ratio: 6.443420e-01	ci left: 2.101249e-04	ci right 4.153025e-04	k: 36	n:120000
WT1   120000 perm   29 sec   (4070 perm/sec)   p_kst 3.000000e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.898775e-01	ci left: 3.724112e-04	ci right 6.199916e-04	k: 63	n:130000
KS ci ratio: 6.197087e-01	ci left: 2.133378e-04	ci right 4.100873e-04	k: 39	n:130000
WT1   130000 perm   32 sec   (4010 perm/sec)   p_kst 3.000000e-04   p_cons 4.846154e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 4.618560e-01	ci left: 3.961034e-04	ci right 6.396493e-04	k: 71	n:140000
KS ci ratio: 5.842631e-01	ci left: 2.283695e-04	ci right 4.218912e-04	k: 44	n:140000
WT1   140000 perm   35 sec   (3949 perm/sec)   p_kst 3.142857e-04   p_cons 5.071429e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 4.466093e-01	ci left: 3.992158e-04	ci right 6.341285e-04	k: 76	n:150000
KS ci ratio: 5.657108e-01	ci left: 2.302343e-04	ci right 4.166454e-04	k: 47	n:150000
WT1   150000 perm   39 sec   (3892 perm/sec)   p_kst 3.133333e-04   p_cons 5.066667e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 4.409242e-01	ci left: 3.853670e-04	ci right 6.083853e-04	k: 78	n:160000
KS ci ratio: 5.542834e-01	ci left: 2.265738e-04	ci right 4.048588e-04	k: 49	n:160000
WT1   160000 perm   42 sec   (3837 perm/sec)   p_kst 3.062500e-04   p_cons 4.875000e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 4.301696e-01	ci left: 3.836474e-04	ci right 5.986923e-04	k: 82	n:170000
KS ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
WT1   170000 perm   45 sec   (3779 perm/sec)   p_kst 3.058824e-04   p_cons 4.823529e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 4.154153e-01	ci left: 3.921211e-04	ci right 6.022906e-04	k: 88	n:180000
KS ci ratio: 5.284905e-01	ci left: 2.253770e-04	ci right 3.914170e-04	k: 54	n:180000
WT1   180000 perm   48 sec   (3722 perm/sec)   p_kst 3.000000e-04   p_cons 4.888889e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.999812e-01	ci left: 4.045481e-04	ci right 6.111901e-04	k: 95	n:190000
KS ci ratio: 5.237535e-01	ci left: 2.180784e-04	ci right 3.767733e-04	k: 55	n:190000
WT1   190000 perm   52 sec   (3669 perm/sec)   p_kst 2.894737e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.899551e-01	ci left: 4.068379e-04	ci right 6.081011e-04	k: 100	n:200000
KS ci ratio: 5.018268e-01	ci left: 2.289392e-04	ci right 3.861428e-04	k: 60	n:200000
WT1   200000 perm   55 sec   (3620 perm/sec)   p_kst 3.000000e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.771043e-01	ci left: 4.175853e-04	ci right 6.156747e-04	k: 107	n:210000
KS ci ratio: 4.899242e-01	ci left: 2.305357e-04	ci right 3.838142e-04	k: 63	n:210000
WT1   210000 perm   59 sec   (3572 perm/sec)   p_kst 3.000000e-04   p_cons 5.095238e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.686670e-01	ci left: 4.192018e-04	ci right 6.125370e-04	k: 112	n:220000
KS ci ratio: 4.752953e-01	ci left: 2.360261e-04	ci right 3.867461e-04	k: 67	n:220000
WT1   220000 perm   62 sec   (3526 perm/sec)   p_kst 3.045455e-04   p_cons 5.090909e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.592521e-01	ci left: 4.246775e-04	ci right 6.143668e-04	k: 118	n:230000
KS ci ratio: 4.684573e-01	ci left: 2.334252e-04	ci right 3.796541e-04	k: 69	n:230000
WT1   230000 perm   66 sec   (3479 perm/sec)   p_kst 3.000000e-04   p_cons 5.130435e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.548092e-01	ci left: 4.183612e-04	ci right 6.023852e-04	k: 121	n:240000
KS ci ratio: 4.525709e-01	ci left: 2.421155e-04	ci right 3.870690e-04	k: 74	n:240000
WT1   240000 perm   70 sec   (3430 perm/sec)   p_kst 3.083333e-04   p_cons 5.041667e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.491326e-01	ci left: 4.162122e-04	ci right 5.956989e-04	k: 125	n:250000
KS ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
WT1   250000 perm   74 sec   (3383 perm/sec)   p_kst 3.120000e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.411049e-01	ci left: 4.212813e-04	ci right 5.978564e-04	k: 131	n:260000
KS ci ratio: 4.354869e-01	ci left: 2.439882e-04	ci right 3.829353e-04	k: 80	n:260000
WT1   260000 perm   78 sec   (3335 perm/sec)   p_kst 3.076923e-04   p_cons 5.038462e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.336067e-01	ci left: 4.260185e-04	ci right 5.998108e-04	k: 137	n:270000
KS ci ratio: 4.226364e-01	ci left: 2.514704e-04	ci right 3.892589e-04	k: 85	n:270000
WT1   270000 perm   82 sec   (3290 perm/sec)   p_kst 3.148148e-04   p_cons 5.074074e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.300398e-01	ci left: 4.206251e-04	ci right 5.899930e-04	k: 140	n:280000
KS ci ratio: 4.202021e-01	ci left: 2.456818e-04	ci right 3.793052e-04	k: 86	n:280000
WT1   280000 perm   86 sec   (3245 perm/sec)   p_kst 3.071429e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 3.254563e-01	ci left: 4.187791e-04	ci right 5.845726e-04	k: 144	n:290000
KS ci ratio: 4.131394e-01	ci left: 2.464702e-04	ci right 3.776493e-04	k: 89	n:290000
WT1   290000 perm   91 sec   (3200 perm/sec)   p_kst 3.068966e-04   p_cons 4.965517e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 3.189243e-01	ci left: 4.232028e-04	ci right 5.866984e-04	k: 150	n:300000
KS ci ratio: 4.086249e-01	ci left: 2.442319e-04	ci right 3.724132e-04	k: 91	n:300000
WT1   300000 perm   95 sec   (3156 perm/sec)   p_kst 3.033333e-04   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 3.127703e-01	ci left: 4.273721e-04	ci right 5.886564e-04	k: 156	n:310000
KS ci ratio: 4.021212e-01	ci left: 2.450441e-04	ci right 3.710590e-04	k: 94	n:310000
WT1   310000 perm   100 sec   (3113 perm/sec)   p_kst 3.032258e-04   p_cons 5.032258e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 3.032591e-01	ci left: 4.428527e-04	ci right 6.039173e-04	k: 166	n:320000
KS ci ratio: 3.939133e-01	ci left: 2.486353e-04	ci right 3.732082e-04	k: 98	n:320000
WT1   320000 perm   104 sec   (3074 perm/sec)   p_kst 3.062500e-04   p_cons 5.187500e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.996918e-01	ci left: 4.406373e-04	ci right 5.986522e-04	k: 170	n:330000
KS ci ratio: 3.919400e-01	ci left: 2.438317e-04	ci right 3.652273e-04	k: 99	n:330000
WT1   330000 perm   109 sec   (3034 perm/sec)   p_kst 3.000000e-04   p_cons 5.151515e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.912933e-01	ci left: 4.549101e-04	ci right 6.126293e-04	k: 180	n:340000
KS ci ratio: 3.880790e-01	ci left: 2.419656e-04	ci right 3.609419e-04	k: 101	n:340000
WT1   340000 perm   113 sec   (2997 perm/sec)   p_kst 2.970588e-04   p_cons 5.294118e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.873516e-01	ci left: 4.551618e-04	ci right 6.104451e-04	k: 185	n:350000
KS ci ratio: 3.824949e-01	ci left: 2.427935e-04	ci right 3.600270e-04	k: 104	n:350000
WT1   350000 perm   118 sec   (2962 perm/sec)   p_kst 2.971429e-04   p_cons 5.285714e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.835656e-01	ci left: 4.554131e-04	ci right 6.083688e-04	k: 190	n:360000
KS ci ratio: 3.806875e-01	ci left: 2.385604e-04	ci right 3.530694e-04	k: 105	n:360000
WT1   360000 perm   123 sec   (2927 perm/sec)   p_kst 2.916667e-04   p_cons 5.277778e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.813654e-01	ci left: 4.506383e-04	ci right 6.006076e-04	k: 193	n:370000
KS ci ratio: 3.720136e-01	ci left: 2.443484e-04	ci right 3.583127e-04	k: 110	n:370000
WT1   370000 perm   128 sec   (2894 perm/sec)   p_kst 2.972973e-04   p_cons 5.216216e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771125e-01	ci left: 4.534635e-04	ci right 6.016943e-04	k: 199	n:380000
KS ci ratio: 3.737027e-01	ci left: 2.355329e-04	ci right 3.460067e-04	k: 109	n:380000
WT1   380000 perm   133 sec   (2859 perm/sec)   p_kst 2.868421e-04   p_cons 5.236842e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771144e-01	ci left: 4.418358e-04	ci right 5.862668e-04	k: 199	n:390000
KS ci ratio: 3.720165e-01	ci left: 2.318174e-04	ci right 3.399382e-04	k: 110	n:390000
WT1   390000 perm   138 sec   (2826 perm/sec)   p_kst 2.820513e-04   p_cons 5.102564e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.743846e-01	ci left: 4.400985e-04	ci right 5.822999e-04	k: 203	n:400000
KS ci ratio: 3.654889e-01	ci left: 2.350954e-04	ci right 3.423622e-04	k: 114	n:400000
WT1   400000 perm   143 sec   (2794 perm/sec)   p_kst 2.850000e-04   p_cons 5.075000e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.710826e-01	ci left: 4.407257e-04	ci right 5.811244e-04	k: 208	n:410000
KS ci ratio: 3.577926e-01	ci left: 2.404487e-04	ci right 3.473102e-04	k: 119	n:410000
WT1   410000 perm   148 sec   (2763 perm/sec)   p_kst 2.902439e-04   p_cons 5.073171e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.672730e-01	ci left: 4.435541e-04	ci right 5.825355e-04	k: 214	n:420000
KS ci ratio: 3.577939e-01	ci left: 2.347236e-04	ci right 3.390411e-04	k: 119	n:420000
WT1   420000 perm   154 sec   (2734 perm/sec)   p_kst 2.833333e-04   p_cons 5.095238e-04   p_joint 0

Joint ci ratio: 3.754199e-01	ci left: 2.060381e-04	ci right 3.032310e-04	k: 108	n:430000
Cons ci ratio: 2.630249e-01	ci left: 4.484361e-04	ci right 5.863465e-04	k: 221	n:430000
KS ci ratio: 3.548494e-01	ci left: 2.334997e-04	ci right 3.362223e-04	k: 121	n:430000
WT1   430000 perm   159 sec   (2706 perm/sec)   p_kst 2.813953e-04   p_cons 5.139535e-04   p_joint 2.511628e-04

Joint ci ratio: 4.131615e-01	ci left: 1.624447e-04	ci right 2.489082e-04	k: 89	n:440000
Cons ci ratio: 2.584093e-01	ci left: 4.552384e-04	ci right 5.923874e-04	k: 229	n:440000
KS ci ratio: 3.534047e-01	ci left: 2.302634e-04	ci right 3.310551e-04	k: 122	n:440000
WT1   440000 perm   164 sec   (2676 perm/sec)   p_kst 2.772727e-04   p_cons 5.204545e-04   p_joint 2.022727e-04

Joint ci ratio: 4.086460e-01	ci left: 1.628197e-04	ci right 2.482784e-04	k: 91	n:450000
Cons ci ratio: 2.556455e-01	ci left: 4.555173e-04	ci right 5.910486e-04	k: 234	n:450000
KS ci ratio: 3.437567e-01	ci left: 2.393406e-04	ci right 3.406099e-04	k: 129	n:450000
WT1   450000 perm   170 sec   (2650 perm/sec)   p_kst 2.866667e-04   p_cons 5.200000e-04   p_joint 2.022222e-04

Joint ci ratio: 3.687169e-01	ci left: 2.004833e-04	ci right 2.929604e-04	k: 112	n:460000
Cons ci ratio: 2.402809e-01	ci left: 5.088243e-04	ci right 6.497639e-04	k: 265	n:460000
KS ci ratio: 3.424428e-01	ci left: 2.361241e-04	ci right 3.355660e-04	k: 130	n:460000
WT1   460000 perm   176 sec   (2617 perm/sec)   p_kst 2.826087e-04   p_cons 5.760870e-04   p_joint 2.434783e-04

Joint ci ratio: 3.623586e-01	ci left: 2.039468e-04	ci right 2.960160e-04	k: 116	n:470000
Cons ci ratio: 2.371800e-01	ci left: 5.120012e-04	ci right 6.517218e-04	k: 272	n:470000
KS ci ratio: 3.398587e-01	ci left: 2.349909e-04	ci right 3.330448e-04	k: 132	n:470000
WT1   470000 perm   181 sec   (2592 perm/sec)   p_kst 2.808511e-04   p_cons 5.787234e-04   p_joint 2.468085e-04

Joint ci ratio: 3.593009e-01	ci left: 2.034868e-04	ci right 2.943919e-04	k: 118	n:480000
Cons ci ratio: 2.346158e-01	ci left: 5.130958e-04	ci right 6.513816e-04	k: 278	n:480000
KS ci ratio: 3.373321e-01	ci left: 2.339077e-04	ci right 3.306261e-04	k: 134	n:480000
WT1   480000 perm   187 sec   (2566 perm/sec)   p_kst 2.791667e-04   p_cons 5.791667e-04   p_joint 2.458333e-04

Joint ci ratio: 3.608214e-01	ci left: 1.974777e-04	ci right 2.861594e-04	k: 117	n:490000
Cons ci ratio: 2.535016e-01	ci left: 4.259738e-04	ci right 5.514840e-04	k: 238	n:490000
KS ci ratio: 3.324426e-01	ci left: 2.366110e-04	ci right 3.327256e-04	k: 138	n:490000
WT1   490000 perm   193 sec   (2543 perm/sec)   p_kst 2.816327e-04   p_cons 4.857143e-04   p_joint 2.387755e-04

Joint ci ratio: 3.593027e-01	ci left: 1.953472e-04	ci right 2.826165e-04	k: 118	n:500000
Cons ci ratio: 2.519259e-01	ci left: 4.230743e-04	ci right 5.468337e-04	k: 241	n:500000
KS ci ratio: 3.312538e-01	ci left: 2.337121e-04	ci right 3.282373e-04	k: 139	n:500000
WT1   500000 perm   198 sec   (2520 perm/sec)   p_kst 2.780000e-04   p_cons 4.820000e-04   p_joint 2.360000e-04

Joint ci ratio: 3.593035e-01	ci left: 1.915168e-04	ci right 2.770751e-04	k: 118	n:510000
Cons ci ratio: 2.498695e-01	ci left: 4.221287e-04	ci right 5.444468e-04	k: 245	n:510000
KS ci ratio: 3.289130e-01	ci left: 2.327261e-04	ci right 3.260467e-04	k: 141	n:510000
WT1   510000 perm   204 sec   (2494 perm/sec)   p_kst 2.764706e-04   p_cons 4.803922e-04   p_joint 2.313725e-04

Joint ci ratio: 3.578038e-01	ci left: 1.895836e-04	ci right 2.738424e-04	k: 119	n:520000
Cons ci ratio: 2.468767e-01	ci left: 4.248312e-04	ci right 5.462317e-04	k: 251	n:520000
KS ci ratio: 3.277615e-01	ci left: 2.300151e-04	ci right 3.218577e-04	k: 142	n:520000
WT1   520000 perm   211 sec   (2470 perm/sec)   p_kst 2.730769e-04   p_cons 4.826923e-04   p_joint 2.288462e-04

Joint ci ratio: 3.548589e-01	ci left: 1.894424e-04	ci right 2.727856e-04	k: 121	n:530000
Cons ci ratio: 2.459035e-01	ci left: 4.203560e-04	ci right 5.399318e-04	k: 253	n:530000
KS ci ratio: 3.221767e-01	ci left: 2.343398e-04	ci right 3.259856e-04	k: 147	n:530000
WT1   530000 perm   217 sec   (2447 perm/sec)   p_kst 2.773585e-04   p_cons 4.773585e-04   p_joint 2.283019e-04

Joint ci ratio: 3.534139e-01	ci left: 1.876212e-04	ci right 2.697500e-04	k: 122	n:540000
Cons ci ratio: 2.444645e-01	ci left: 4.177858e-04	ci right 5.358293e-04	k: 256	n:540000
KS ci ratio: 3.189602e-01	ci left: 2.351088e-04	ci right 3.259499e-04	k: 150	n:540000
WT1   540000 perm   223 sec   (2422 perm/sec)   p_kst 2.777778e-04   p_cons 4.740741e-04   p_joint 2.259259e-04

Joint ci ratio: 3.519864e-01	ci left: 1.858670e-04	ci right 2.668241e-04	k: 123	n:550000
Cons ci ratio: 2.407454e-01	ci left: 4.238512e-04	ci right 5.415147e-04	k: 264	n:550000
KS ci ratio: 3.168688e-01	ci left: 2.341803e-04	ci right 3.239491e-04	k: 152	n:550000
WT1   550000 perm   229 sec   (2400 perm/sec)   p_kst 2.763636e-04   p_cons 4.800000e-04   p_joint 2.236364e-04

Joint ci ratio: 3.478040e-01	ci left: 1.874344e-04	ci right 2.678854e-04	k: 126	n:560000
Cons ci ratio: 2.385059e-01	ci left: 4.246750e-04	ci right 5.413084e-04	k: 269	n:560000
KS ci ratio: 3.138072e-01	ci left: 2.349318e-04	ci right 3.239440e-04	k: 155	n:560000
WT1   560000 perm   235 sec   (2379 perm/sec)   p_kst 2.767857e-04   p_cons 4.803571e-04   p_joint 2.250000e-04

Joint ci ratio: 3.424523e-01	ci left: 1.905554e-04	ci right 2.708090e-04	k: 130	n:570000
Cons ci ratio: 2.350484e-01	ci left: 4.304272e-04	ci right 5.466777e-04	k: 277	n:570000
KS ci ratio: 3.088954e-01	ci left: 2.388969e-04	ci right 3.277157e-04	k: 160	n:570000
WT1   570000 perm   242 sec   (2359 perm/sec)   p_kst 2.807018e-04   p_cons 4.859649e-04   p_joint 2.280702e-04

Joint ci ratio: 3.411531e-01	ci left: 1.888461e-04	ci right 2.680115e-04	k: 131	n:580000
Cons ci ratio: 2.313328e-01	ci left: 4.376171e-04	ci right 5.536740e-04	k: 286	n:580000
KS ci ratio: 3.060570e-01	ci left: 2.395514e-04	ci right 3.276357e-04	k: 163	n:580000
WT1   580000 perm   248 sec   (2338 perm/sec)   p_kst 2.810345e-04   p_cons 4.931034e-04   p_joint 2.258621e-04

Joint ci ratio: 3.360982e-01	ci left: 1.918486e-04	ci right 2.708229e-04	k: 135	n:590000
Cons ci ratio: 2.289518e-01	ci left: 4.397831e-04	ci right 5.550444e-04	k: 292	n:590000
KS ci ratio: 3.006067e-01	ci left: 2.448870e-04	ci right 3.330234e-04	k: 169	n:590000
WT1   590000 perm   255 sec   (2316 perm/sec)   p_kst 2.864407e-04   p_cons 4.949153e-04   p_joint 2.288136e-04

Joint ci ratio: 3.348697e-01	ci left: 1.901774e-04	ci right 2.681157e-04	k: 136	n:600000
Cons ci ratio: 2.274050e-01	ci left: 4.387390e-04	ci right 5.528408e-04	k: 296	n:600000
KS ci ratio: 2.997269e-01	ci left: 2.423466e-04	ci right 3.292649e-04	k: 170	n:600000
WT1   600000 perm   262 sec   (2294 perm/sec)   p_kst 2.833333e-04   p_cons 4.933333e-04   p_joint 2.266667e-04

Joint ci ratio: 3.424549e-01	ci left: 1.780598e-04	ci right 2.530514e-04	k: 130	n:610000
Cons ci ratio: 2.251420e-01	ci left: 4.408252e-04	ci right 5.541704e-04	k: 302	n:610000
KS ci ratio: 2.962814e-01	ci left: 2.444410e-04	ci right 3.309132e-04	k: 174	n:610000
WT1   610000 perm   268 sec   (2275 perm/sec)   p_kst 2.852459e-04   p_cons 4.950820e-04   p_joint 2.131148e-04

Joint ci ratio: 3.411556e-01	ci left: 1.766623e-04	ci right 2.507208e-04	k: 131	n:620000
Cons ci ratio: 2.229453e-01	ci left: 4.428495e-04	ci right 5.554517e-04	k: 308	n:620000
KS ci ratio: 2.937740e-01	ci left: 2.449790e-04	ci right 3.307717e-04	k: 177	n:620000
WT1   620000 perm   275 sec   (2256 perm/sec)   p_kst 2.854839e-04   p_cons 4.967742e-04   p_joint 2.112903e-04

Joint ci ratio: 3.639291e-01	ci left: 1.507075e-04	ci right 2.191072e-04	k: 115	n:630000
Cons ci ratio: 2.215163e-01	ci left: 4.418159e-04	ci right 5.533371e-04	k: 312	n:630000
KS ci ratio: 2.858525e-01	ci left: 2.558102e-04	ci right 3.425444e-04	k: 187	n:630000
WT1   630000 perm   282 sec   (2238 perm/sec)   p_kst 2.968254e-04   p_cons 4.952381e-04   p_joint 1.825397e-04

Joint ci ratio: 3.655088e-01	ci left: 1.469333e-04	ci right 2.139787e-04	k: 114	n:640000
Cons ci ratio: 2.208124e-01	ci left: 4.378643e-04	ci right 5.479892e-04	k: 314	n:640000
KS ci ratio: 2.835987e-01	ci left: 2.561660e-04	ci right 3.422135e-04	k: 190	n:640000
WT1   640000 perm   288 sec   (2220 perm/sec)   p_kst 2.968750e-04   p_cons 4.906250e-04   p_joint 1.781250e-04

Joint ci ratio: 3.623712e-01	ci left: 1.474684e-04	ci right 2.140438e-04	k: 116	n:650000
Cons ci ratio: 2.187389e-01	ci left: 4.398507e-04	ci right 5.492966e-04	k: 320	n:650000
KS ci ratio: 2.821257e-01	ci left: 2.550836e-04	ci right 3.402433e-04	k: 192	n:650000
WT1   650000 perm   295 sec   (2202 perm/sec)   p_kst 2.953846e-04   p_cons 4.923077e-04   p_joint 1.784615e-04

Joint ci ratio: 3.639306e-01	ci left: 1.438571e-04	ci right 2.091480e-04	k: 115	n:660000
Cons ci ratio: 2.173888e-01	ci left: 4.389158e-04	ci right 5.473651e-04	k: 324	n:660000
KS ci ratio: 2.806753e-01	ci left: 2.540352e-04	ci right 3.383317e-04	k: 194	n:660000
WT1   660000 perm   302 sec   (2183 perm/sec)   p_kst 2.939394e-04   p_cons 4.909091e-04   p_joint 1.742424e-04

Joint ci ratio: 3.843575e-01	ci left: 1.254822e-04	ci right 1.864409e-04	k: 103	n:670000
Cons ci ratio: 2.141188e-01	ci left: 4.464840e-04	ci right 5.549258e-04	k: 334	n:670000
KS ci ratio: 2.778400e-01	ci left: 2.557958e-04	ci right 3.396691e-04	k: 198	n:670000
WT1   670000 perm   309 sec   (2166 perm/sec)   p_kst 2.955224e-04   p_cons 4.985075e-04   p_joint 1.537313e-04

Joint ci ratio: 3.825230e-01	ci left: 1.249657e-04	ci right 1.853108e-04	k: 104	n:680000
Cons ci ratio: 2.131667e-01	ci left: 4.440937e-04	ci right 5.514127e-04	k: 337	n:680000
KS ci ratio: 2.757691e-01	ci left: 2.561396e-04	ci right 3.393912e-04	k: 201	n:680000
WT1   680000 perm   317 sec   (2146 perm/sec)   p_kst 2.955882e-04   p_cons 4.955882e-04   p_joint 1.529412e-04

Joint ci ratio: 3.807145e-01	ci left: 1.244648e-04	ci right 1.842128e-04	k: 105	n:690000
Cons ci ratio: 2.116073e-01	ci left: 4.445185e-04	ci right 5.510524e-04	k: 342	n:690000
KS ci ratio: 2.744141e-01	ci left: 2.551261e-04	ci right 3.375705e-04	k: 203	n:690000
WT1   690000 perm   324 sec   (2127 perm/sec)   p_kst 2.942029e-04   p_cons 4.956522e-04   p_joint 1.521739e-04

Joint ci ratio: 3.789315e-01	ci left: 1.239789e-04	ci right 1.831456e-04	k: 106	n:700000
Cons ci ratio: 2.088840e-01	ci left: 4.503486e-04	ci right 5.567132e-04	k: 351	n:700000
KS ci ratio: 2.737444e-01	ci left: 2.528118e-04	ci right 3.342746e-04	k: 204	n:700000
WT1   700000 perm   332 sec   (2110 perm/sec)   p_kst 2.914286e-04   p_cons 5.014286e-04   p_joint 1.514286e-04

Joint ci ratio: 3.789319e-01	ci left: 1.222327e-04	ci right 1.805661e-04	k: 106	n:710000
Cons ci ratio: 2.071261e-01	ci left: 4.520163e-04	ci right 5.577623e-04	k: 357	n:710000
KS ci ratio: 2.724189e-01	ci left: 2.518751e-04	ci right 3.325758e-04	k: 206	n:710000
WT1   710000 perm   339 sec   (2094 perm/sec)   p_kst 2.901408e-04   p_cons 5.028169e-04   p_joint 1.492958e-04

Joint ci ratio: 3.789323e-01	ci left: 1.205350e-04	ci right 1.780583e-04	k: 106	n:720000
Cons ci ratio: 2.056946e-01	ci left: 4.523238e-04	ci right 5.573185e-04	k: 362	n:720000
KS ci ratio: 2.717636e-01	ci left: 2.496709e-04	ci right 3.294402e-04	k: 207	n:720000
WT1   720000 perm   347 sec   (2077 perm/sec)   p_kst 2.875000e-04   p_cons 5.027778e-04   p_joint 1.472222e-04

Joint ci ratio: 3.754396e-01	ci left: 1.213638e-04	ci right 1.786174e-04	k: 108	n:730000
Cons ci ratio: 2.048502e-01	ci left: 4.500259e-04	ci right 5.540046e-04	k: 365	n:730000
KS ci ratio: 2.698247e-01	ci left: 2.500814e-04	ci right 3.293152e-04	k: 210	n:730000
WT1   730000 perm   354 sec   (2060 perm/sec)   p_kst 2.876712e-04   p_cons 5.000000e-04   p_joint 1.479452e-04

Joint ci ratio: 3.737293e-01	ci left: 1.209479e-04	ci right 1.776817e-04	k: 109	n:740000
Cons ci ratio: 2.034651e-01	ci left: 4.503558e-04	ci right 5.536198e-04	k: 370	n:740000
KS ci ratio: 2.685551e-01	ci left: 2.492222e-04	ci right 3.277497e-04	k: 212	n:740000
WT1   740000 perm   362 sec   (2043 perm/sec)   p_kst 2.864865e-04   p_cons 5.000000e-04   p_joint 1.472973e-04

Joint ci ratio: 3.703773e-01	ci left: 1.217526e-04	ci right 1.782275e-04	k: 111	n:750000
Cons ci ratio: 2.013059e-01	ci left: 4.544773e-04	ci right 5.574445e-04	k: 378	n:750000
KS ci ratio: 2.666836e-01	ci left: 2.496309e-04	ci right 3.276474e-04	k: 215	n:750000
WT1   750000 perm   372 sec   (2014 perm/sec)   p_kst 2.866667e-04   p_cons 5.040000e-04   p_joint 1.480000e-04

Joint ci ratio: 3.687349e-01	ci left: 1.213442e-04	ci right 1.773198e-04	k: 112	n:760000
Cons ci ratio: 2.002520e-01	ci left: 4.534959e-04	ci right 5.556372e-04	k: 382	n:760000
KS ci ratio: 2.666841e-01	ci left: 2.463462e-04	ci right 3.233364e-04	k: 215	n:760000
WT1   760000 perm   382 sec   (1990 perm/sec)   p_kst 2.828947e-04   p_cons 5.026316e-04   p_joint 1.473684e-04

Joint ci ratio: 3.671142e-01	ci left: 1.209469e-04	ci right 1.764353e-04	k: 113	n:770000
Cons ci ratio: 1.997316e-01	ci left: 4.500736e-04	ci right 5.511485e-04	k: 384	n:770000
KS ci ratio: 2.654581e-01	ci left: 2.455711e-04	ci right 3.219075e-04	k: 217	n:770000
WT1   770000 perm   391 sec   (1968 perm/sec)   p_kst 2.818182e-04   p_cons 4.987013e-04   p_joint 1.467532e-04

Joint ci ratio: 3.639356e-01	ci left: 1.217249e-04	ci right 1.769719e-04	k: 115	n:780000
Cons ci ratio: 1.981931e-01	ci left: 4.516126e-04	ci right 5.521575e-04	k: 390	n:780000
KS ci ratio: 2.648517e-01	ci left: 2.436195e-04	ci right 3.191476e-04	k: 218	n:780000
WT1   780000 perm   399 sec   (1953 perm/sec)   p_kst 2.794872e-04   p_cons 5.000000e-04   p_joint 1.474359e-04

Joint ci ratio: 3.623771e-01	ci left: 1.213344e-04	ci right 1.761125e-04	k: 116	n:790000
Cons ci ratio: 1.966896e-01	ci left: 4.531155e-04	ci right 5.531380e-04	k: 396	n:790000
KS ci ratio: 2.624654e-01	ci left: 2.452644e-04	ci right 3.205049e-04	k: 222	n:790000
WT1   790000 perm   408 sec   (1938 perm/sec)   p_kst 2.810127e-04   p_cons 5.012658e-04   p_joint 1.468354e-04

Joint ci ratio: 3.623774e-01	ci left: 1.198177e-04	ci right 1.739112e-04	k: 116	n:800000
Cons ci ratio: 1.952198e-01	ci left: 4.545836e-04	ci right 5.540912e-04	k: 402	n:800000
KS ci ratio: 2.624659e-01	ci left: 2.421986e-04	ci right 3.164986e-04	k: 222	n:800000
WT1   800000 perm   416 sec   (1923 perm/sec)   p_kst 2.775000e-04   p_cons 5.025000e-04   p_joint 1.450000e-04

Joint ci ratio: 3.608387e-01	ci left: 1.194609e-04	ci right 1.731104e-04	k: 117	n:810000
Cons ci ratio: 1.930753e-01	ci left: 4.595426e-04	ci right 5.589010e-04	k: 411	n:810000
KS ci ratio: 2.612969e-01	ci left: 2.415155e-04	ci right 3.152221e-04	k: 224	n:810000
WT1   810000 perm   424 sec   (1910 perm/sec)   p_kst 2.765432e-04   p_cons 5.074074e-04   p_joint 1.444444e-04

Joint ci ratio: 3.593195e-01	ci left: 1.191133e-04	ci right 1.723287e-04	k: 118	n:820000
Cons ci ratio: 1.912273e-01	ci left: 4.632253e-04	ci right 5.623098e-04	k: 419	n:820000
KS ci ratio: 2.590046e-01	ci left: 2.431302e-04	ci right 3.165733e-04	k: 228	n:820000
WT1   820000 perm   432 sec   (1896 perm/sec)   p_kst 2.780488e-04   p_cons 5.109756e-04   p_joint 1.439024e-04

Joint ci ratio: 3.771774e-01	ci left: 1.056507e-04	ci right 1.557793e-04	k: 107	n:830000
Cons ci ratio: 1.905482e-01	ci left: 4.610860e-04	ci right 5.593221e-04	k: 422	n:830000
KS ci ratio: 2.567715e-01	ci left: 2.447088e-04	ci right 3.178893e-04	k: 232	n:830000
WT1   830000 perm   441 sec   (1883 perm/sec)   p_kst 2.795181e-04   p_cons 5.084337e-04   p_joint 1.289157e-04

Joint ci ratio: 3.754433e-01	ci left: 1.054708e-04	ci right 1.552273e-04	k: 108	n:840000
Cons ci ratio: 1.887712e-01	ci left: 4.646686e-04	ci right 5.626388e-04	k: 430	n:840000
KS ci ratio: 2.556767e-01	ci left: 2.440236e-04	ci right 3.166384e-04	k: 234	n:840000
WT1   840000 perm   449 sec   (1869 perm/sec)   p_kst 2.785714e-04   p_cons 5.119048e-04   p_joint 1.285714e-04

Joint ci ratio: 3.720454e-01	ci left: 1.063619e-04	ci right 1.559741e-04	k: 110	n:850000
Cons ci ratio: 1.879014e-01	ci left: 4.636859e-04	ci right 5.609471e-04	k: 434	n:850000
KS ci ratio: 2.540601e-01	ci left: 2.444567e-04	ci right 3.166676e-04	k: 237	n:850000
WT1   850000 perm   458 sec   (1856 perm/sec)   p_kst 2.788235e-04   p_cons 5.105882e-04   p_joint 1.294118e-04

Joint ci ratio: 3.703808e-01	ci left: 1.061794e-04	ci right 1.554312e-04	k: 111	n:860000
Cons ci ratio: 1.872570e-01	ci left: 4.616187e-04	ci right 5.580765e-04	k: 437	n:860000
KS ci ratio: 2.529995e-01	ci left: 2.437920e-04	ci right 3.154585e-04	k: 239	n:860000
WT1   860000 perm   467 sec   (1842 perm/sec)   p_kst 2.779070e-04   p_cons 5.081395e-04   p_joint 1.290698e-04

Joint ci ratio: 3.919772e-01	ci left: 9.248635e-05	ci right 1.385373e-04	k: 99	n:870000
Cons ci ratio: 1.853619e-01	ci left: 4.661752e-04	ci right 5.624885e-04	k: 446	n:870000
KS ci ratio: 2.509169e-01	ci left: 2.452972e-04	ci right 3.167199e-04	k: 243	n:870000
WT1   870000 perm   476 sec   (1829 perm/sec)   p_kst 2.793103e-04   p_cons 5.126437e-04   p_joint 1.137931e-04

Joint ci ratio: 3.900320e-01	ci left: 9.246001e-05	ci right 1.382106e-04	k: 100	n:880000
Cons ci ratio: 1.839271e-01	ci left: 4.684647e-04	ci right 5.644183e-04	k: 453	n:880000
KS ci ratio: 2.504046e-01	ci left: 2.435747e-04	ci right 3.143285e-04	k: 244	n:880000
WT1   880000 perm   485 sec   (1815 perm/sec)   p_kst 2.772727e-04   p_cons 5.147727e-04   p_joint 1.136364e-04

Joint ci ratio: 3.843649e-01	ci left: 9.446380e-05	ci right 1.403550e-04	k: 103	n:890000
Cons ci ratio: 1.827236e-01	ci left: 4.696333e-04	ci right 5.651271e-04	k: 459	n:890000
KS ci ratio: 2.493889e-01	ci left: 2.429444e-04	ci right 3.131843e-04	k: 246	n:890000
WT1   890000 perm   494 sec   (1803 perm/sec)   p_kst 2.764045e-04   p_cons 5.157303e-04   p_joint 1.157303e-04

Joint ci ratio: 3.843652e-01	ci left: 9.341420e-05	ci right 1.387955e-04	k: 103	n:900000
Cons ci ratio: 1.817386e-01	ci left: 4.697173e-04	ci right 5.646566e-04	k: 464	n:900000
KS ci ratio: 2.493893e-01	ci left: 2.402449e-04	ci right 3.097046e-04	k: 246	n:900000
WT1   900000 perm   503 sec   (1791 perm/sec)   p_kst 2.733333e-04   p_cons 5.155556e-04   p_joint 1.144444e-04

Joint ci ratio: 3.771796e-01	ci left: 9.636260e-05	ci right 1.420846e-04	k: 107	n:910000
Cons ci ratio: 1.798149e-01	ci left: 4.750474e-04	ci right 5.699372e-04	k: 474	n:910000
KS ci ratio: 2.478884e-01	ci left: 2.406962e-04	ci right 3.098029e-04	k: 249	n:910000
WT1   910000 perm   512 sec   (1779 perm/sec)   p_kst 2.736264e-04   p_cons 5.208791e-04   p_joint 1.175824e-04

Joint ci ratio: 3.754455e-01	ci left: 9.629933e-05	ci right 1.417295e-04	k: 108	n:920000
Cons ci ratio: 1.788759e-01	ci left: 4.750747e-04	ci right 5.694207e-04	k: 479	n:920000
KS ci ratio: 2.459286e-01	ci left: 2.421588e-04	ci right 3.110518e-04	k: 253	n:920000
WT1   920000 perm   521 sec   (1766 perm/sec)   p_kst 2.750000e-04   p_cons 5.206522e-04   p_joint 1.173913e-04

Joint ci ratio: 3.771801e-01	ci left: 9.429026e-05	ci right 1.390290e-04	k: 107	n:930000
Cons ci ratio: 1.783198e-01	ci left: 4.730479e-04	ci right 5.666678e-04	k: 482	n:930000
KS ci ratio: 2.440146e-01	ci left: 2.435920e-04	ci right 3.122717e-04	k: 257	n:930000
WT1   930000 perm   530 sec   (1755 perm/sec)   p_kst 2.763441e-04   p_cons 5.182796e-04   p_joint 1.150538e-04

Joint ci ratio: 3.807224e-01	ci left: 9.136215e-05	ci right 1.352206e-04	k: 105	n:940000
Cons ci ratio: 1.770413e-01	ci left: 4.751311e-04	ci right 5.684170e-04	k: 489	n:940000
KS ci ratio: 2.421445e-01	ci left: 2.449968e-04	ci right 3.134636e-04	k: 261	n:940000
WT1   940000 perm   539 sec   (1742 perm/sec)   p_kst 2.776596e-04   p_cons 5.202128e-04   p_joint 1.117021e-04

Joint ci ratio: 3.789392e-01	ci left: 9.135258e-05	ci right 1.349499e-04	k: 106	n:950000
Cons ci ratio: 1.757899e-01	ci left: 4.771729e-04	ci right 5.701271e-04	k: 496	n:950000
KS ci ratio: 2.407700e-01	ci left: 2.453847e-04	ci right 3.135126e-04	k: 264	n:950000
WT1   950000 perm   549 sec   (1732 perm/sec)   p_kst 2.778947e-04   p_cons 5.221053e-04   p_joint 1.115789e-04

Joint ci ratio: 3.754464e-01	ci left: 9.228682e-05	ci right 1.358242e-04	k: 108	n:960000
Cons ci ratio: 1.750869e-01	ci left: 4.761860e-04	ci right 5.685378e-04	k: 500	n:960000
KS ci ratio: 2.394186e-01	ci left: 2.457657e-04	ci right 3.135594e-04	k: 267	n:960000
WT1   960000 perm   558 sec   (1721 perm/sec)   p_kst 2.781250e-04   p_cons 5.208333e-04   p_joint 1.125000e-04

Joint ci ratio: 3.754466e-01	ci left: 9.133540e-05	ci right 1.344239e-04	k: 108	n:970000
Cons ci ratio: 1.745652e-01	ci left: 4.742343e-04	ci right 5.659046e-04	k: 503	n:970000
KS ci ratio: 2.380897e-01	ci left: 2.461398e-04	ci right 3.136043e-04	k: 270	n:970000
WT1   970000 perm   567 sec   (1711 perm/sec)   p_kst 2.783505e-04   p_cons 5.185567e-04   p_joint 1.113402e-04

Joint ci ratio: 3.807233e-01	ci left: 8.763305e-05	ci right 1.297015e-04	k: 105	n:980000
Cons ci ratio: 1.733653e-01	ci left: 4.762270e-04	ci right 5.675836e-04	k: 510	n:980000
KS ci ratio: 2.367826e-01	ci left: 2.465073e-04	ci right 3.136473e-04	k: 273	n:980000
WT1   980000 perm   577 sec   (1699 perm/sec)   p_kst 2.785714e-04   p_cons 5.204082e-04   p_joint 1.071429e-04

Joint ci ratio: 3.789400e-01	ci left: 8.766153e-05	ci right 1.294975e-04	k: 106	n:990000
Cons ci ratio: 1.726908e-01	ci left: 4.752821e-04	ci right 5.660656e-04	k: 514	n:990000
KS ci ratio: 2.363519e-01	ci left: 2.449675e-04	ci right 3.115490e-04	k: 274	n:990000
WT1   990000 perm   586 sec   (1688 perm/sec)   p_kst 2.767677e-04   p_cons 5.191919e-04   p_joint 1.070707e-04

Joint ci ratio: 3.825326e-01	ci left: 8.497630e-05	ci right 1.260120e-04	k: 104	n:1000000
Cons ci ratio: 1.715289e-01	ci left: 4.772278e-04	ci right 5.677062e-04	k: 521	n:1000000
KS ci ratio: 2.354972e-01	ci left: 2.443996e-04	ci right 3.105515e-04	k: 276	n:1000000
WT1   1000000 perm   596 sec   (1677 perm/sec)   p_kst 2.760000e-04   p_cons 5.210000e-04   p_joint 1.040000e-04

Joint ci ratio: 3.807239e-01	ci left: 8.503007e-05	ci right 1.258490e-04	k: 105	n:1010000
Cons ci ratio: 1.707132e-01	ci left: 4.772412e-04	ci right 5.672476e-04	k: 526	n:1010000
KS ci ratio: 2.346517e-01	ci left: 2.438434e-04	ci right 3.095734e-04	k: 278	n:1010000
WT1   1010000 perm   606 sec   (1666 perm/sec)   p_kst 2.752475e-04   p_cons 5.207921e-04   p_joint 1.039604e-04

Joint ci ratio: 4.155008e-01	ci left: 6.919524e-05	ci right 1.062915e-04	k: 88	n:1020000
Cons ci ratio: 1.699091e-01	ci left: 4.772554e-04	ci right 5.667971e-04	k: 531	n:1020000
KS ci ratio: 2.338153e-01	ci left: 2.432985e-04	ci right 3.086140e-04	k: 280	n:1020000
WT1   1020000 perm   616 sec   (1656 perm/sec)   p_kst 2.745098e-04   p_cons 5.205882e-04   p_joint 8.627451e-05

Joint ci ratio: 4.202502e-01	ci left: 6.678586e-05	ci right 1.031148e-04	k: 86	n:1030000
Cons ci ratio: 1.694323e-01	ci left: 4.754107e-04	ci right 5.643304e-04	k: 534	n:1030000
KS ci ratio: 2.329877e-01	ci left: 2.427646e-04	ci right 3.076728e-04	k: 282	n:1030000
WT1   1030000 perm   626 sec   (1645 perm/sec)   p_kst 2.737864e-04   p_cons 5.184466e-04   p_joint 8.349515e-05

Joint ci ratio: 4.202503e-01	ci left: 6.614369e-05	ci right 1.021233e-04	k: 86	n:1040000
Cons ci ratio: 1.691167e-01	ci left: 4.726810e-04	ci right 5.609087e-04	k: 536	n:1040000
KS ci ratio: 2.321688e-01	ci left: 2.422413e-04	ci right 3.067494e-04	k: 284	n:1040000
WT1   1040000 perm   636 sec   (1634 perm/sec)   p_kst 2.730769e-04   p_cons 5.153846e-04   p_joint 8.269231e-05

Joint ci ratio: 4.131864e-01	ci left: 6.807131e-05	ci right 1.043058e-04	k: 89	n:1050000
Cons ci ratio: 1.675634e-01	ci left: 4.773020e-04	ci right 5.654913e-04	k: 546	n:1050000
KS ci ratio: 2.297625e-01	ci left: 2.453180e-04	ci right 3.098722e-04	k: 290	n:1050000
WT1   1050000 perm   646 sec   (1624 perm/sec)   p_kst 2.761905e-04   p_cons 5.200000e-04   p_joint 8.476190e-05

Joint ci ratio: 4.109098e-01	ci left: 6.827471e-05	ci right 1.043625e-04	k: 90	n:1060000
Cons ci ratio: 1.669541e-01	ci left: 4.764147e-04	ci right 5.640879e-04	k: 550	n:1060000
KS ci ratio: 2.278134e-01	ci left: 2.474503e-04	ci right 3.119357e-04	k: 295	n:1060000
WT1   1060000 perm   656 sec   (1615 perm/sec)   p_kst 2.783019e-04   p_cons 5.188679e-04   p_joint 8.490566e-05

Joint ci ratio: 4.086705e-01	ci left: 6.847486e-05	ci right 1.044175e-04	k: 91	n:1070000
Cons ci ratio: 1.663515e-01	ci left: 4.755446e-04	ci right 5.627102e-04	k: 554	n:1070000
KS ci ratio: 2.274298e-01	ci left: 2.460190e-04	ci right 3.100082e-04	k: 296	n:1070000
WT1   1070000 perm   667 sec   (1605 perm/sec)   p_kst 2.766355e-04   p_cons 5.177570e-04   p_joint 8.504673e-05

Joint ci ratio: 4.086707e-01	ci left: 6.784083e-05	ci right 1.034507e-04	k: 91	n:1080000
Cons ci ratio: 1.654595e-01	ci left: 4.764664e-04	ci right 5.632859e-04	k: 560	n:1080000
KS ci ratio: 2.270481e-01	ci left: 2.446142e-04	ci right 3.081164e-04	k: 297	n:1080000
WT1   1080000 perm   677 sec   (1595 perm/sec)   p_kst 2.750000e-04   p_cons 5.185185e-04   p_joint 8.425926e-05

Joint ci ratio: 4.064675e-01	ci left: 6.804180e-05	ci right 1.035126e-04	k: 92	n:1090000
Cons ci ratio: 1.645816e-01	ci left: 4.773724e-04	ci right 5.638498e-04	k: 566	n:1090000
KS ci ratio: 2.266683e-01	ci left: 2.432354e-04	ci right 3.062591e-04	k: 298	n:1090000
WT1   1090000 perm   687 sec   (1586 perm/sec)   p_kst 2.733945e-04   p_cons 5.192661e-04   p_joint 8.440367e-05

Joint ci ratio: 4.042997e-01	ci left: 6.823962e-05	ci right 1.035729e-04	k: 93	n:1100000
Cons ci ratio: 1.640042e-01	ci left: 4.765195e-04	ci right 5.625097e-04	k: 570	n:1100000
KS ci ratio: 2.251670e-01	ci left: 2.444547e-04	ci right 3.073167e-04	k: 302	n:1100000
WT1   1100000 perm   698 sec   (1577 perm/sec)   p_kst 2.745455e-04   p_cons 5.181818e-04   p_joint 8.454545e-05

Joint ci ratio: 4.109106e-01	ci left: 6.519925e-05	ci right 9.966149e-05	k: 90	n:1110000
Cons ci ratio: 1.632909e-01	ci left: 4.765465e-04	ci right 5.621308e-04	k: 575	n:1110000
KS ci ratio: 2.247965e-01	ci left: 2.431025e-04	ci right 3.054997e-04	k: 303	n:1110000
WT1   1110000 perm   708 sec   (1568 perm/sec)   p_kst 2.729730e-04   p_cons 5.180180e-04   p_joint 8.108108e-05

Joint ci ratio: 4.043000e-01	ci left: 6.702104e-05	ci right 1.017234e-04	k: 93	n:1120000
Cons ci ratio: 1.620296e-01	ci left: 4.800003e-04	ci right 5.654743e-04	k: 584	n:1120000
KS ci ratio: 2.226101e-01	ci left: 2.459890e-04	ci right 3.084288e-04	k: 309	n:1120000
WT1   1120000 perm   719 sec   (1559 perm/sec)   p_kst 2.758929e-04   p_cons 5.214286e-04   p_joint 8.303571e-05

Joint ci ratio: 4.043001e-01	ci left: 6.642793e-05	ci right 1.008232e-04	k: 93	n:1130000
Cons ci ratio: 1.614786e-01	ci left: 4.791491e-04	ci right 5.641531e-04	k: 588	n:1130000
KS ci ratio: 2.215407e-01	ci left: 2.463193e-04	ci right 3.085017e-04	k: 312	n:1130000
WT1   1130000 perm   729 sec   (1550 perm/sec)   p_kst 2.761062e-04   p_cons 5.203540e-04   p_joint 8.230088e-05

Joint ci ratio: 4.000663e-01	ci left: 6.742215e-05	ci right 1.018697e-04	k: 95	n:1140000
Cons ci ratio: 1.605274e-01	ci left: 4.808390e-04	ci right 5.655919e-04	k: 595	n:1140000
KS ci ratio: 2.187622e-01	ci left: 2.507893e-04	ci right 3.131993e-04	k: 320	n:1140000
WT1   1140000 perm   741 sec   (1539 perm/sec)   p_kst 2.807018e-04   p_cons 5.219298e-04   p_joint 8.333333e-05

Joint ci ratio: 4.000665e-01	ci left: 6.683587e-05	ci right 1.009839e-04	k: 95	n:1150000
Cons ci ratio: 1.595928e-01	ci left: 4.825010e-04	ci right 5.670042e-04	k: 602	n:1150000
KS ci ratio: 2.184224e-01	ci left: 2.494305e-04	ci right 3.113929e-04	k: 321	n:1150000
WT1   1150000 perm   752 sec   (1529 perm/sec)   p_kst 2.791304e-04   p_cons 5.234783e-04   p_joint 8.260870e-05

Joint ci ratio: 3.979989e-01	ci left: 6.703525e-05	ci right 1.010615e-04	k: 96	n:1160000
Cons ci ratio: 1.589353e-01	ci left: 4.824800e-04	ci right 5.665982e-04	k: 607	n:1160000
KS ci ratio: 2.167458e-01	ci left: 2.513557e-04	ci right 3.132534e-04	k: 326	n:1160000
WT1   1160000 perm   763 sec   (1519 perm/sec)   p_kst 2.810345e-04   p_cons 5.232759e-04   p_joint 8.275862e-05

Joint ci ratio: 3.959630e-01	ci left: 6.723167e-05	ci right 1.011373e-04	k: 97	n:1170000
Cons ci ratio: 1.584151e-01	ci left: 4.816393e-04	ci right 5.653100e-04	k: 611	n:1170000
KS ci ratio: 2.154321e-01	ci left: 2.524411e-04	ci right 3.141795e-04	k: 330	n:1170000
WT1   1170000 perm   775 sec   (1510 perm/sec)   p_kst 2.820513e-04   p_cons 5.222222e-04   p_joint 8.290598e-05

Joint ci ratio: 3.959632e-01	ci left: 6.666190e-05	ci right 1.002803e-04	k: 97	n:1180000
Cons ci ratio: 1.579000e-01	ci left: 4.808133e-04	ci right 5.640431e-04	k: 615	n:1180000
KS ci ratio: 2.147843e-01	ci left: 2.519054e-04	ci right 3.133031e-04	k: 332	n:1180000
WT1   1180000 perm   786 sec   (1501 perm/sec)   p_kst 2.813559e-04   p_cons 5.211864e-04   p_joint 8.220339e-05

Joint ci ratio: 3.979993e-01	ci left: 6.534527e-05	ci right 9.851377e-05	k: 96	n:1190000
Cons ci ratio: 1.575171e-01	ci left: 4.791943e-04	ci right 5.619237e-04	k: 618	n:1190000
KS ci ratio: 2.135057e-01	ci left: 2.529697e-04	ci right 3.142116e-04	k: 336	n:1190000
WT1   1190000 perm   797 sec   (1492 perm/sec)   p_kst 2.823529e-04   p_cons 5.193277e-04   p_joint 8.067227e-05

Joint ci ratio: 3.959635e-01	ci left: 6.555086e-05	ci right 9.860894e-05	k: 97	n:1200000
Cons ci ratio: 1.570106e-01	ci left: 4.784032e-04	ci right 5.607054e-04	k: 622	n:1200000
KS ci ratio: 2.125616e-01	ci left: 2.532282e-04	ci right 3.142263e-04	k: 339	n:1200000
WT1   1200000 perm   809 sec   (1484 perm/sec)   p_kst 2.825000e-04   p_cons 5.183333e-04   p_joint 8.083333e-05

Joint ci ratio: 3.900381e-01	ci left: 6.724346e-05	ci right 1.005171e-04	k: 100	n:1210000
Cons ci ratio: 1.560120e-01	ci left: 4.808021e-04	ci right 5.629418e-04	k: 630	n:1210000
KS ci ratio: 2.113221e-01	ci left: 2.542658e-04	ci right 3.151104e-04	k: 343	n:1210000
WT1   1210000 perm   820 sec   (1476 perm/sec)   p_kst 2.834711e-04   p_cons 5.206612e-04   p_joint 8.264463e-05

Joint ci ratio: 3.900383e-01	ci left: 6.669228e-05	ci right 9.969321e-05	k: 100	n:1220000
Cons ci ratio: 1.555199e-01	ci left: 4.800120e-04	ci right 5.617339e-04	k: 634	n:1220000
KS ci ratio: 2.107105e-01	ci left: 2.537343e-04	ci right 3.142534e-04	k: 345	n:1220000
WT1   1220000 perm   831 sec   (1468 perm/sec)   p_kst 2.827869e-04   p_cons 5.196721e-04   p_joint 8.196721e-05

Joint ci ratio: 3.825363e-01	ci left: 6.908631e-05	ci right 1.024490e-04	k: 104	n:1230000
Cons ci ratio: 1.550325e-01	ci left: 4.792351e-04	ci right 5.605453e-04	k: 638	n:1230000
KS ci ratio: 2.101042e-01	ci left: 2.532118e-04	ci right 3.134101e-04	k: 347	n:1230000
WT1   1230000 perm   842 sec   (1461 perm/sec)   p_kst 2.821138e-04   p_cons 5.186992e-04   p_joint 8.455285e-05

Joint ci ratio: 3.825365e-01	ci left: 6.852916e-05	ci right 1.016228e-04	k: 104	n:1240000
Cons ci ratio: 1.545496e-01	ci left: 4.784712e-04	ci right 5.593754e-04	k: 642	n:1240000
KS ci ratio: 2.098032e-01	ci left: 2.519338e-04	ci right 3.117314e-04	k: 348	n:1240000
WT1   1240000 perm   853 sec   (1453 perm/sec)   p_kst 2.806452e-04   p_cons 5.177419e-04   p_joint 8.387097e-05

Joint ci ratio: 3.807278e-01	ci left: 6.870418e-05	ci right 1.016862e-04	k: 105	n:1250000
Cons ci ratio: 1.531269e-01	ci left: 4.838739e-04	ci right 5.648695e-04	k: 654	n:1250000
KS ci ratio: 2.089072e-01	ci left: 2.521925e-04	ci right 3.117632e-04	k: 351	n:1250000
WT1   1250000 perm   865 sec   (1445 perm/sec)   p_kst 2.808000e-04   p_cons 5.232000e-04   p_joint 8.400000e-05

Joint ci ratio: 3.789445e-01	ci left: 6.887678e-05	ci right 1.017483e-04	k: 106	n:1260000
Cons ci ratio: 1.527775e-01	ci left: 4.823235e-04	ci right 5.628585e-04	k: 657	n:1260000
KS ci ratio: 2.083163e-01	ci left: 2.516953e-04	ci right 3.109590e-04	k: 353	n:1260000
WT1   1260000 perm   877 sec   (1437 perm/sec)   p_kst 2.801587e-04   p_cons 5.214286e-04   p_joint 8.412698e-05

Joint ci ratio: 3.881221e-01	ci left: 6.477696e-05	ci right 9.663237e-05	k: 101	n:1270000
Cons ci ratio: 1.523154e-01	ci left: 4.815550e-04	ci right 5.616963e-04	k: 661	n:1270000
KS ci ratio: 2.077304e-01	ci left: 2.512062e-04	ci right 3.101672e-04	k: 355	n:1270000
WT1   1270000 perm   889 sec   (1428 perm/sec)   p_kst 2.795276e-04   p_cons 5.204724e-04   p_joint 7.952756e-05

Joint ci ratio: 3.862334e-01	ci left: 6.497609e-05	ci right 9.673436e-05	k: 102	n:1280000
Cons ci ratio: 1.520860e-01	ci left: 4.792958e-04	ci right 5.589300e-04	k: 663	n:1280000
KS ci ratio: 2.071494e-01	ci left: 2.507250e-04	ci right 3.093876e-04	k: 357	n:1280000
WT1   1280000 perm   901 sec   (1421 perm/sec)   p_kst 2.789063e-04   p_cons 5.179687e-04   p_joint 7.968750e-05

Joint ci ratio: 3.843720e-01	ci left: 6.517250e-05	ci right 9.683441e-05	k: 103	n:1290000
Cons ci ratio: 1.511778e-01	ci left: 4.815467e-04	ci right 5.610339e-04	k: 671	n:1290000
KS ci ratio: 2.060016e-01	ci left: 2.517218e-04	ci right 3.102502e-04	k: 361	n:1290000
WT1   1290000 perm   913 sec   (1413 perm/sec)   p_kst 2.798450e-04   p_cons 5.201550e-04   p_joint 7.984496e-05

Joint ci ratio: 3.807284e-01	ci left: 6.606169e-05	ci right 9.777525e-05	k: 105	n:1300000
Cons ci ratio: 1.505074e-01	ci left: 4.822837e-04	ci right 5.615077e-04	k: 677	n:1300000
KS ci ratio: 2.045934e-01	ci left: 2.534340e-04	ci right 3.119072e-04	k: 366	n:1300000
WT1   1300000 perm   924 sec   (1406 perm/sec)   p_kst 2.815385e-04   p_cons 5.207692e-04   p_joint 8.076923e-05

Joint ci ratio: 3.807285e-01	ci left: 6.555740e-05	ci right 9.702888e-05	k: 105	n:1310000
Cons ci ratio: 1.498458e-01	ci left: 4.830102e-04	ci right 5.619735e-04	k: 683	n:1310000
KS ci ratio: 2.043153e-01	ci left: 2.522236e-04	ci right 3.103286e-04	k: 367	n:1310000
WT1   1310000 perm   936 sec   (1399 perm/sec)   p_kst 2.801527e-04   p_cons 5.213740e-04   p_joint 8.015267e-05

Joint ci ratio: 3.807286e-01	ci left: 6.506075e-05	ci right 9.629382e-05	k: 105	n:1320000
Cons ci ratio: 1.496273e-01	ci left: 4.808093e-04	ci right 5.592880e-04	k: 685	n:1320000
KS ci ratio: 2.034876e-01	ci left: 2.524695e-04	ci right 3.103663e-04	k: 370	n:1320000
WT1   1320000 perm   948 sec   (1392 perm/sec)   p_kst 2.803030e-04   p_cons 5.189394e-04   p_joint 7.954545e-05

Joint ci ratio: 3.807287e-01	ci left: 6.457157e-05	ci right 9.556981e-05	k: 105	n:1330000
Cons ci ratio: 1.490850e-01	ci left: 4.808131e-04	ci right 5.589826e-04	k: 690	n:1330000
KS ci ratio: 2.023993e-01	ci left: 2.534260e-04	ci right 3.111928e-04	k: 374	n:1330000
WT1   1330000 perm   961 sec   (1385 perm/sec)   p_kst 2.812030e-04   p_cons 5.187970e-04   p_joint 7.894737e-05

Joint ci ratio: 3.807289e-01	ci left: 6.408969e-05	ci right 9.485661e-05	k: 105	n:1340000
Cons ci ratio: 1.487626e-01	ci left: 4.793803e-04	ci right 5.571333e-04	k: 693	n:1340000
KS ci ratio: 2.018618e-01	ci left: 2.529517e-04	ci right 3.104385e-04	k: 376	n:1340000
WT1   1340000 perm   973 sec   (1377 perm/sec)   p_kst 2.805970e-04   p_cons 5.171642e-04   p_joint 7.835821e-05

Joint ci ratio: 3.807290e-01	ci left: 6.361494e-05	ci right 9.415397e-05	k: 105	n:1350000
Cons ci ratio: 1.479123e-01	ci left: 4.815354e-04	ci right 5.591521e-04	k: 701	n:1350000
KS ci ratio: 2.018620e-01	ci left: 2.510780e-04	ci right 3.081389e-04	k: 376	n:1350000
WT1   1350000 perm   985 sec   (1370 perm/sec)   p_kst 2.785185e-04   p_cons 5.192593e-04   p_joint 7.777778e-05

Joint ci ratio: 3.807291e-01	ci left: 6.314718e-05	ci right 9.346167e-05	k: 105	n:1360000
Cons ci ratio: 1.475974e-01	ci left: 4.801190e-04	ci right 5.573281e-04	k: 704	n:1360000
KS ci ratio: 2.013287e-01	ci left: 2.506282e-04	ci right 3.074179e-04	k: 378	n:1360000
WT1   1360000 perm   998 sec   (1363 perm/sec)   p_kst 2.779412e-04   p_cons 5.176471e-04   p_joint 7.720588e-05

Joint ci ratio: 3.771872e-01	ci left: 6.400706e-05	ci right 9.437773e-05	k: 107	n:1370000
Cons ci ratio: 1.470768e-01	ci left: 4.801296e-04	ci right 5.570441e-04	k: 709	n:1370000
KS ci ratio: 2.010638e-01	ci left: 2.494919e-04	ci right 3.059407e-04	k: 379	n:1370000
WT1   1370000 perm   1011 sec   (1355 perm/sec)   p_kst 2.766423e-04   p_cons 5.175182e-04   p_joint 7.810219e-05

Joint ci ratio: 3.771873e-01	ci left: 6.354323e-05	ci right 9.369384e-05	k: 107	n:1380000
Cons ci ratio: 1.468703e-01	ci left: 4.780463e-04	ci right 5.545101e-04	k: 711	n:1380000
KS ci ratio: 2.007999e-01	ci left: 2.483721e-04	ci right 3.044848e-04	k: 380	n:1380000
WT1   1380000 perm   1024 sec   (1348 perm/sec)   p_kst 2.753623e-04   p_cons 5.152174e-04   p_joint 7.753623e-05

Joint ci ratio: 3.754530e-01	ci left: 6.373747e-05	ci right 9.380695e-05	k: 108	n:1390000
Cons ci ratio: 1.464595e-01	ci left: 4.773792e-04	ci right 5.535041e-04	k: 715	n:1390000
KS ci ratio: 1.997540e-01	ci left: 2.493187e-04	ci right 3.053161e-04	k: 384	n:1390000
WT1   1390000 perm   1038 sec   (1339 perm/sec)   p_kst 2.762590e-04   p_cons 5.143885e-04   p_joint 7.769784e-05

Joint ci ratio: 3.737425e-01	ci left: 6.392924e-05	ci right 9.391813e-05	k: 109	n:1400000
Cons ci ratio: 1.460522e-01	ci left: 4.767219e-04	ci right 5.525121e-04	k: 719	n:1400000
KS ci ratio: 1.987242e-01	ci left: 2.502525e-04	ci right 3.061347e-04	k: 388	n:1400000
WT1   1400000 perm   1051 sec   (1332 perm/sec)   p_kst 2.771429e-04   p_cons 5.135714e-04   p_joint 7.785714e-05

Joint ci ratio: 3.720552e-01	ci left: 6.411859e-05	ci right 9.402744e-05	k: 110	n:1410000
Cons ci ratio: 1.458499e-01	ci left: 4.747075e-04	ci right 5.500638e-04	k: 721	n:1410000
KS ci ratio: 1.979623e-01	ci left: 2.504996e-04	ci right 3.061967e-04	k: 391	n:1410000
WT1   1410000 perm   1065 sec   (1324 perm/sec)   p_kst 2.773050e-04   p_cons 5.113475e-04   p_joint 7.801418e-05

Joint ci ratio: 3.687478e-01	ci left: 6.494441e-05	ci right 9.490424e-05	k: 112	n:1420000
Cons ci ratio: 1.454476e-01	ci left: 4.740788e-04	ci right 5.491096e-04	k: 725	n:1420000
KS ci ratio: 1.974593e-01	ci left: 2.500743e-04	ci right 3.055185e-04	k: 393	n:1420000
WT1   1420000 perm   1078 sec   (1317 perm/sec)   p_kst 2.767606e-04   p_cons 5.105634e-04   p_joint 7.887324e-05

Joint ci ratio: 3.655271e-01	ci left: 6.575984e-05	ci right 9.576764e-05	k: 114	n:1430000
Cons ci ratio: 1.451481e-01	ci left: 4.727851e-04	ci right 5.474438e-04	k: 728	n:1430000
KS ci ratio: 1.969601e-01	ci left: 2.496551e-04	ci right 3.048496e-04	k: 395	n:1430000
WT1   1430000 perm   1091 sec   (1310 perm/sec)   p_kst 2.762238e-04   p_cons 5.090909e-04   p_joint 7.972028e-05

Joint ci ratio: 3.623893e-01	ci left: 6.656506e-05	ci right 9.661794e-05	k: 116	n:1440000
Cons ci ratio: 1.446529e-01	ci left: 4.728483e-04	ci right 5.472402e-04	k: 733	n:1440000
KS ci ratio: 1.967120e-01	ci left: 2.485815e-04	ci right 3.034612e-04	k: 396	n:1440000
WT1   1440000 perm   1105 sec   (1303 perm/sec)   p_kst 2.750000e-04   p_cons 5.090278e-04   p_joint 8.055556e-05

Joint ci ratio: 3.608504e-01	ci left: 6.673299e-05	ci right 9.670366e-05	k: 117	n:1450000
Cons ci ratio: 1.437740e-01	ci left: 4.755702e-04	ci right 5.498967e-04	k: 742	n:1450000
KS ci ratio: 1.964648e-01	ci left: 2.475229e-04	ci right 3.020919e-04	k: 397	n:1450000
WT1   1450000 perm   1118 sec   (1297 perm/sec)   p_kst 2.737931e-04   p_cons 5.117241e-04   p_joint 8.068966e-05

Joint ci ratio: 3.737431e-01	ci left: 6.130199e-05	ci right 9.005851e-05	k: 109	n:1460000
Cons ci ratio: 1.431969e-01	ci left: 4.762750e-04	ci right 5.503873e-04	k: 748	n:1460000
KS ci ratio: 1.962186e-01	ci left: 2.464788e-04	ci right 3.007414e-04	k: 398	n:1460000
WT1   1460000 perm   1132 sec   (1290 perm/sec)   p_kst 2.726027e-04   p_cons 5.123288e-04   p_joint 7.465753e-05

Joint ci ratio: 3.720558e-01	ci left: 6.150149e-05	ci right 9.018961e-05	k: 110	n:1470000
Cons ci ratio: 1.427213e-01	ci left: 4.763147e-04	ci right 5.501661e-04	k: 753	n:1470000
KS ci ratio: 1.954850e-01	ci left: 2.467428e-04	ci right 3.008363e-04	k: 401	n:1470000
WT1   1470000 perm   1145 sec   (1284 perm/sec)   p_kst 2.727891e-04   p_cons 5.122449e-04   p_joint 7.482993e-05

Joint ci ratio: 3.843740e-01	ci left: 5.680571e-05	ci right 8.440306e-05	k: 103	n:1480000
Cons ci ratio: 1.325568e-01	ci left: 5.513906e-04	ci right 6.303147e-04	k: 873	n:1480000
KS ci ratio: 1.954852e-01	ci left: 2.450756e-04	ci right 2.988037e-04	k: 401	n:1480000
WT1   1480000 perm   1158 sec   (1278 perm/sec)   p_kst 2.709459e-04   p_cons 5.898649e-04   p_joint 6.959459e-05

Joint ci ratio: 3.825392e-01	ci left: 5.703091e-05	ci right 8.457213e-05	k: 104	n:1490000
Cons ci ratio: 1.320291e-01	ci left: 5.522325e-04	ci right 6.309378e-04	k: 880	n:1490000
KS ci ratio: 1.947598e-01	ci left: 2.453459e-04	ci right 2.989099e-04	k: 404	n:1490000
WT1   1490000 perm   1172 sec   (1271 perm/sec)   p_kst 2.711409e-04   p_cons 5.906040e-04   p_joint 6.979866e-05

Joint ci ratio: 3.807305e-01	ci left: 5.725341e-05	ci right 8.473864e-05	k: 105	n:1500000
Cons ci ratio: 1.315076e-01	ci left: 5.530638e-04	ci right 6.315519e-04	k: 887	n:1500000
KS ci ratio: 1.940425e-01	ci left: 2.456129e-04	ci right 2.990144e-04	k: 407	n:1500000
WT1   1500000 perm   1186 sec   (1265 perm/sec)   p_kst 2.713333e-04   p_cons 5.913333e-04   p_joint 7.000000e-05

Joint ci ratio: 3.807306e-01	ci left: 5.687425e-05	ci right 8.417746e-05	k: 105	n:1510000
Cons ci ratio: 1.311390e-01	ci left: 5.526036e-04	ci right 6.307894e-04	k: 892	n:1510000
KS ci ratio: 1.938052e-01	ci left: 2.446164e-04	ci right 2.977286e-04	k: 408	n:1510000
WT1   1510000 perm   1200 sec   (1258 perm/sec)   p_kst 2.701987e-04   p_cons 5.907285e-04   p_joint 6.953642e-05

Joint ci ratio: 3.754543e-01	ci left: 5.828620e-05	ci right 8.578405e-05	k: 108	n:1520000
Cons ci ratio: 1.306279e-01	ci left: 5.534226e-04	ci right 6.313955e-04	k: 899	n:1520000
KS ci ratio: 1.923989e-01	ci left: 2.467636e-04	ci right 2.999077e-04	k: 414	n:1520000
WT1   1520000 perm   1214 sec   (1252 perm/sec)   p_kst 2.723684e-04   p_cons 5.914474e-04   p_joint 7.105263e-05

Joint ci ratio: 3.754544e-01	ci left: 5.790525e-05	ci right 8.522337e-05	k: 108	n:1530000
Cons ci ratio: 1.304832e-01	ci left: 5.510699e-04	ci right 6.286186e-04	k: 901	n:1530000
KS ci ratio: 1.917072e-01	ci left: 2.470173e-04	ci right 3.000025e-04	k: 417	n:1530000
WT1   1530000 perm   1228 sec   (1245 perm/sec)   p_kst 2.725490e-04   p_cons 5.888889e-04   p_joint 7.058824e-05

Joint ci ratio: 3.737439e-01	ci left: 5.811745e-05	ci right 8.538018e-05	k: 109	n:1540000
Cons ci ratio: 1.301949e-01	ci left: 5.500042e-04	ci right 6.272187e-04	k: 905	n:1540000
KS ci ratio: 1.907964e-01	ci left: 2.478864e-04	ci right 3.007760e-04	k: 421	n:1540000
WT1   1540000 perm   1242 sec   (1239 perm/sec)   p_kst 2.733766e-04   p_cons 5.876623e-04   p_joint 7.077922e-05

Joint ci ratio: 3.703917e-01	ci left: 5.891218e-05	ci right 8.623978e-05	k: 111	n:1550000
Cons ci ratio: 1.297659e-01	ci left: 5.502009e-04	ci right 6.271689e-04	k: 911	n:1550000
KS ci ratio: 1.901218e-01	ci left: 2.481303e-04	ci right 3.008632e-04	k: 424	n:1550000
WT1   1550000 perm   1257 sec   (1233 perm/sec)   p_kst 2.735484e-04   p_cons 5.877419e-04   p_joint 7.161290e-05

Joint ci ratio: 3.687491e-01	ci left: 5.911603e-05	ci right 8.638726e-05	k: 112	n:1560000
Cons ci ratio: 1.292707e-01	ci left: 5.510158e-04	ci right 6.277811e-04	k: 918	n:1560000
KS ci ratio: 1.894543e-01	ci left: 2.483714e-04	ci right 3.009489e-04	k: 427	n:1560000
WT1   1560000 perm   1271 sec   (1227 perm/sec)   p_kst 2.737179e-04   p_cons 5.884615e-04   p_joint 7.179487e-05

Joint ci ratio: 3.671282e-01	ci left: 5.931755e-05	ci right 8.653260e-05	k: 113	n:1570000
Cons ci ratio: 1.288508e-01	ci left: 5.512044e-04	ci right 6.277274e-04	k: 924	n:1570000
KS ci ratio: 1.885751e-01	ci left: 2.492167e-04	ci right 3.017002e-04	k: 431	n:1570000
WT1   1570000 perm   1285 sec   (1222 perm/sec)   p_kst 2.745223e-04   p_cons 5.885350e-04   p_joint 7.197452e-05

Joint ci ratio: 3.671283e-01	ci left: 5.894212e-05	ci right 8.598493e-05	k: 113	n:1580000
Cons ci ratio: 1.284349e-01	ci left: 5.513910e-04	ci right 6.276741e-04	k: 930	n:1580000
KS ci ratio: 1.872788e-01	ci left: 2.512582e-04	ci right 3.037666e-04	k: 437	n:1580000
WT1   1580000 perm   1299 sec   (1216 perm/sec)   p_kst 2.765823e-04   p_cons 5.886076e-04   p_joint 7.151899e-05

Joint ci ratio: 3.655286e-01	ci left: 5.914245e-05	ci right 8.613071e-05	k: 114	n:1590000
Cons ci ratio: 1.276149e-01	ci left: 5.552287e-04	ci right 6.315151e-04	k: 942	n:1590000
KS ci ratio: 1.866407e-01	ci left: 2.514765e-04	ci right 3.038311e-04	k: 440	n:1590000
WT1   1590000 perm   1314 sec   (1210 perm/sec)   p_kst 2.767296e-04   p_cons 5.924528e-04   p_joint 7.169811e-05

Joint ci ratio: 3.639496e-01	ci left: 5.934054e-05	ci right 8.627443e-05	k: 115	n:1600000
Cons ci ratio: 1.271438e-01	ci left: 5.559941e-04	ci right 6.320825e-04	k: 949	n:1600000
KS ci ratio: 1.857999e-01	ci left: 2.522882e-04	ci right 3.045486e-04	k: 444	n:1600000
WT1   1600000 perm   1329 sec   (1204 perm/sec)   p_kst 2.775000e-04   p_cons 5.931250e-04   p_joint 7.187500e-05

Joint ci ratio: 3.639496e-01	ci left: 5.897196e-05	ci right 8.573857e-05	k: 115	n:1610000
Cons ci ratio: 1.267442e-01	ci left: 5.561491e-04	ci right 6.320015e-04	k: 955	n:1610000
KS ci ratio: 1.851768e-01	ci left: 2.524980e-04	ci right 3.046068e-04	k: 447	n:1610000
WT1   1610000 perm   1347 sec   (1196 perm/sec)   p_kst 2.776398e-04   p_cons 5.931677e-04   p_joint 7.142857e-05

Joint ci ratio: 3.593325e-01	ci left: 6.029154e-05	ci right 8.722871e-05	k: 118	n:1620000
Cons ci ratio: 1.262826e-01	ci left: 5.569003e-04	ci right 6.325579e-04	k: 962	n:1620000
KS ci ratio: 1.843555e-01	ci left: 2.532943e-04	ci right 3.053097e-04	k: 451	n:1620000
WT1   1620000 perm   1361 sec   (1190 perm/sec)   p_kst 2.783951e-04   p_cons 5.938272e-04   p_joint 7.283951e-05

Joint ci ratio: 3.563503e-01	ci left: 6.103836e-05	ci right 8.803040e-05	k: 120	n:1630000
Cons ci ratio: 1.255029e-01	ci left: 5.606139e-04	ci right 6.362708e-04	k: 974	n:1630000
KS ci ratio: 1.837467e-01	ci left: 2.534961e-04	ci right 3.053618e-04	k: 454	n:1630000
WT1   1630000 perm   1376 sec   (1184 perm/sec)   p_kst 2.785276e-04   p_cons 5.975460e-04   p_joint 7.361963e-05

Joint ci ratio: 3.639499e-01	ci left: 5.789320e-05	ci right 8.417019e-05	k: 115	n:1640000
Cons ci ratio: 1.254388e-01	ci left: 5.577861e-04	ci right 6.330200e-04	k: 975	n:1640000
KS ci ratio: 1.833443e-01	ci left: 2.531139e-04	ci right 3.047753e-04	k: 456	n:1640000
WT1   1640000 perm   1392 sec   (1178 perm/sec)   p_kst 2.780488e-04   p_cons 5.945122e-04   p_joint 7.012195e-05

Joint ci ratio: 3.623912e-01	ci left: 5.809309e-05	ci right 8.432120e-05	k: 116	n:1650000
Cons ci ratio: 1.247376e-01	ci left: 5.608637e-04	ci right 6.360586e-04	k: 986	n:1650000
KS ci ratio: 1.827454e-01	ci left: 2.533147e-04	ci right 3.048296e-04	k: 459	n:1650000
WT1   1650000 perm   1407 sec   (1173 perm/sec)   p_kst 2.781818e-04   p_cons 5.975758e-04   p_joint 7.030303e-05

Joint ci ratio: 3.623912e-01	ci left: 5.774313e-05	ci right 8.381324e-05	k: 116	n:1660000
Cons ci ratio: 1.242976e-01	ci left: 5.615706e-04	ci right 6.365751e-04	k: 993	n:1660000
KS ci ratio: 1.819559e-01	ci left: 2.540884e-04	ci right 3.055128e-04	k: 463	n:1660000
WT1   1660000 perm   1421 sec   (1168 perm/sec)   p_kst 2.789157e-04   p_cons 5.981928e-04   p_joint 6.987952e-05

Joint ci ratio: 3.623913e-01	ci left: 5.739736e-05	ci right 8.331137e-05	k: 116	n:1670000
Cons ci ratio: 1.240483e-01	ci left: 5.605287e-04	ci right 6.352328e-04	k: 997	n:1670000
KS ci ratio: 1.813705e-01	ci left: 2.542816e-04	ci right 3.055614e-04	k: 466	n:1670000
WT1   1670000 perm   1438 sec   (1162 perm/sec)   p_kst 2.790419e-04   p_cons 5.970060e-04   p_joint 6.946108e-05

Joint ci ratio: 3.623914e-01	ci left: 5.705571e-05	ci right 8.281547e-05	k: 116	n:1680000
Cons ci ratio: 1.238005e-01	ci left: 5.594993e-04	ci right 6.339064e-04	k: 1001	n:1680000
KS ci ratio: 1.807908e-01	ci left: 2.544728e-04	ci right 3.056091e-04	k: 469	n:1680000
WT1   1680000 perm   1453 sec   (1156 perm/sec)   p_kst 2.791667e-04   p_cons 5.958333e-04   p_joint 6.904762e-05

Joint ci ratio: 3.623915e-01	ci left: 5.671810e-05	ci right 8.232544e-05	k: 116	n:1690000
Cons ci ratio: 1.234315e-01	ci left: 5.596292e-04	ci right 6.338155e-04	k: 1007	n:1690000
KS ci ratio: 1.805988e-01	ci left: 2.535320e-04	ci right 3.044192e-04	k: 470	n:1690000
WT1   1690000 perm   1468 sec   (1151 perm/sec)   p_kst 2.781065e-04   p_cons 5.958580e-04   p_joint 6.863905e-05

Joint ci ratio: 3.623916e-01	ci left: 5.638446e-05	ci right 8.184118e-05	k: 116	n:1700000
Cons ci ratio: 1.231266e-01	ci left: 5.591877e-04	ci right 6.331191e-04	k: 1012	n:1700000
KS ci ratio: 1.802167e-01	ci left: 2.531640e-04	ci right 3.038581e-04	k: 472	n:1700000
WT1   1700000 perm   1484 sec   (1146 perm/sec)   p_kst 2.776471e-04   p_cons 5.952941e-04   p_joint 6.823529e-05

Joint ci ratio: 3.593332e-01	ci left: 5.711829e-05	ci right 8.263776e-05	k: 118	n:1710000
Cons ci ratio: 1.228843e-01	ci left: 5.581848e-04	ci right 6.318277e-04	k: 1016	n:1710000
KS ci ratio: 1.796478e-01	ci left: 2.533589e-04	ci right 3.039144e-04	k: 475	n:1710000
WT1   1710000 perm   1499 sec   (1141 perm/sec)   p_kst 2.777778e-04   p_cons 5.941520e-04   p_joint 6.900585e-05

Joint ci ratio: 3.563510e-01	ci left: 5.784447e-05	ci right 8.342419e-05	k: 120	n:1720000
Cons ci ratio: 1.224037e-01	ci left: 5.594480e-04	ci right 6.329481e-04	k: 1024	n:1720000
KS ci ratio: 1.790844e-01	ci left: 2.535517e-04	ci right 3.039699e-04	k: 478	n:1720000
WT1   1720000 perm   1514 sec   (1136 perm/sec)   p_kst 2.779070e-04   p_cons 5.953488e-04   p_joint 6.976744e-05

Joint ci ratio: 3.534418e-01	ci left: 5.856312e-05	ci right 8.420068e-05	k: 122	n:1730000
Cons ci ratio: 1.221063e-01	ci left: 5.590160e-04	ci right 6.322679e-04	k: 1029	n:1730000
KS ci ratio: 1.781568e-01	ci left: 2.548471e-04	ci right 3.052321e-04	k: 483	n:1730000
WT1   1730000 perm   1529 sec   (1132 perm/sec)   p_kst 2.791908e-04   p_cons 5.947977e-04   p_joint 7.052023e-05

Joint ci ratio: 3.520137e-01	ci left: 5.875035e-05	ci right 8.434219e-05	k: 123	n:1740000
Cons ci ratio: 1.220472e-01	ci left: 5.563604e-04	ci right 6.292265e-04	k: 1030	n:1740000
KS ci ratio: 1.779732e-01	ci left: 2.539315e-04	ci right 3.040782e-04	k: 484	n:1740000
WT1   1740000 perm   1545 sec   (1126 perm/sec)   p_kst 2.781609e-04   p_cons 5.919540e-04   p_joint 7.068966e-05

Joint ci ratio: 3.506028e-01	ci left: 5.893564e-05	ci right 8.448189e-05	k: 124	n:1750000
Cons ci ratio: 1.216936e-01	ci left: 5.565052e-04	ci right 6.291640e-04	k: 1036	n:1750000
KS ci ratio: 1.776074e-01	ci left: 2.535725e-04	ci right 3.035343e-04	k: 486	n:1750000
WT1   1750000 perm   1563 sec   (1119 perm/sec)   p_kst 2.777143e-04   p_cons 5.920000e-04   p_joint 7.085714e-05

Joint ci ratio: 3.492088e-01	ci left: 5.911903e-05	ci right 8.461980e-05	k: 125	n:1760000
Cons ci ratio: 1.215766e-01	ci left: 5.544450e-04	ci right 6.267602e-04	k: 1038	n:1760000
KS ci ratio: 1.772438e-01	ci left: 2.532176e-04	ci right 3.029964e-04	k: 488	n:1760000
WT1   1760000 perm   1579 sec   (1114 perm/sec)   p_kst 2.772727e-04   p_cons 5.897727e-04   p_joint 7.102273e-05

Joint ci ratio: 3.478312e-01	ci left: 5.930054e-05	ci right 8.475595e-05	k: 126	n:1770000
Cons ci ratio: 1.211111e-01	ci left: 5.556952e-04	ci right 6.278760e-04	k: 1046	n:1770000
KS ci ratio: 1.768825e-01	ci left: 2.528669e-04	ci right 3.024646e-04	k: 490	n:1770000
WT1   1770000 perm   1595 sec   (1110 perm/sec)   p_kst 2.768362e-04   p_cons 5.909605e-04   p_joint 7.118644e-05

Joint ci ratio: 3.478312e-01	ci left: 5.896739e-05	ci right 8.427980e-05	k: 126	n:1780000
Cons ci ratio: 1.208805e-01	ci left: 5.547525e-04	ci right 6.266638e-04	k: 1050	n:1780000
KS ci ratio: 1.763446e-01	ci left: 2.530572e-04	ci right 3.025252e-04	k: 493	n:1780000
WT1   1780000 perm   1611 sec   (1105 perm/sec)   p_kst 2.769663e-04   p_cons 5.898876e-04   p_joint 7.078652e-05

Joint ci ratio: 3.655300e-01	ci left: 5.253432e-05	ci right 7.650723e-05	k: 114	n:1790000
Cons ci ratio: 1.203094e-01	ci left: 5.570714e-04	ci right 6.289179e-04	k: 1060	n:1790000
KS ci ratio: 1.745860e-01	ci left: 2.569847e-04	ci right 3.066667e-04	k: 503	n:1790000
WT1   1790000 perm   1626 sec   (1101 perm/sec)   p_kst 2.810056e-04   p_cons 5.921788e-04   p_joint 6.368715e-05

Joint ci ratio: 3.655301e-01	ci left: 5.224247e-05	ci right 7.608219e-05	k: 114	n:1800000
Cons ci ratio: 1.199706e-01	ci left: 5.572097e-04	ci right 6.288574e-04	k: 1066	n:1800000
KS ci ratio: 1.742407e-01	ci left: 2.566196e-04	ci right 3.061226e-04	k: 505	n:1800000
WT1   1800000 perm   1642 sec   (1096 perm/sec)   p_kst 2.805556e-04   p_cons 5.922222e-04   p_joint 6.333333e-05

Joint ci ratio: 3.623923e-01	ci left: 5.295776e-05	ci right 7.686744e-05	k: 116	n:1810000
Cons ci ratio: 1.195790e-01	ci left: 5.578828e-04	ci right 6.293662e-04	k: 1073	n:1810000
KS ci ratio: 1.740689e-01	ci left: 2.557302e-04	ci right 3.050078e-04	k: 506	n:1810000
WT1   1810000 perm   1659 sec   (1091 perm/sec)   p_kst 2.795580e-04   p_cons 5.928177e-04   p_joint 6.408840e-05

Joint ci ratio: 3.608535e-01	ci left: 5.316632e-05	ci right 7.704425e-05	k: 117	n:1820000
Cons ci ratio: 1.190810e-01	ci left: 5.596150e-04	ci right 6.310007e-04	k: 1082	n:1820000
KS ci ratio: 1.735561e-01	ci left: 2.559018e-04	ci right 3.050520e-04	k: 509	n:1820000
WT1   1820000 perm   1676 sec   (1086 perm/sec)   p_kst 2.796703e-04   p_cons 5.945055e-04   p_joint 6.428571e-05

Joint ci ratio: 3.578336e-01	ci left: 5.387003e-05	ci right 7.781439e-05	k: 119	n:1830000
Cons ci ratio: 1.186980e-01	ci left: 5.602683e-04	ci right 6.314914e-04	k: 1089	n:1830000
KS ci ratio: 1.730479e-01	ci left: 2.560717e-04	ci right 3.050954e-04	k: 512	n:1830000
WT1   1830000 perm   1692 sec   (1082 perm/sec)   p_kst 2.797814e-04   p_cons 5.950820e-04   p_joint 6.502732e-05

Joint ci ratio: 3.563518e-01	ci left: 5.407199e-05	ci right 7.798352e-05	k: 120	n:1840000
Cons ci ratio: 1.183186e-01	ci left: 5.609150e-04	ci right 6.319765e-04	k: 1096	n:1840000
KS ci ratio: 1.727116e-01	ci left: 2.557199e-04	ci right 3.045712e-04	k: 514	n:1840000
WT1   1840000 perm   1711 sec   (1075 perm/sec)   p_kst 2.793478e-04   p_cons 5.956522e-04   p_joint 6.521739e-05

Joint ci ratio: 3.548883e-01	ci left: 5.427196e-05	ci right 7.815062e-05	k: 121	n:1850000
Cons ci ratio: 1.177297e-01	ci left: 5.636535e-04	ci right 6.346817e-04	k: 1107	n:1850000
KS ci ratio: 1.723773e-01	ci left: 2.553720e-04	ci right 3.040526e-04	k: 516	n:1850000
WT1   1850000 perm   1728 sec   (1071 perm/sec)   p_kst 2.789189e-04   p_cons 5.983784e-04   p_joint 6.540541e-05

Joint ci ratio: 3.548884e-01	ci left: 5.398017e-05	ci right 7.773045e-05	k: 121	n:1860000
Cons ci ratio: 1.173595e-01	ci left: 5.642759e-04	ci right 6.351435e-04	k: 1114	n:1860000
KS ci ratio: 1.715496e-01	ci left: 2.565715e-04	ci right 3.052217e-04	k: 521	n:1860000
WT1   1860000 perm   1744 sec   (1066 perm/sec)   p_kst 2.801075e-04   p_cons 5.989247e-04   p_joint 6.505376e-05

Joint ci ratio: 3.548885e-01	ci left: 5.369151e-05	ci right 7.731479e-05	k: 121	n:1870000
Cons ci ratio: 1.170973e-01	ci left: 5.638538e-04	ci right 6.344992e-04	k: 1119	n:1870000
KS ci ratio: 1.713856e-01	ci left: 2.557113e-04	ci right 3.041472e-04	k: 522	n:1870000
WT1   1870000 perm   1761 sec   (1062 perm/sec)   p_kst 2.791444e-04   p_cons 5.983957e-04   p_joint 6.470588e-05

Joint ci ratio: 3.548885e-01	ci left: 5.340591e-05	ci right 7.690354e-05	k: 121	n:1880000
Cons ci ratio: 1.169409e-01	ci left: 5.624035e-04	ci right 6.327666e-04	k: 1122	n:1880000
KS ci ratio: 1.707339e-01	ci left: 2.563877e-04	ci right 3.047480e-04	k: 526	n:1880000
WT1   1880000 perm   1777 sec   (1058 perm/sec)   p_kst 2.797872e-04   p_cons 5.968085e-04   p_joint 6.436170e-05

Joint ci ratio: 3.520148e-01	ci left: 5.408760e-05	ci right 7.764841e-05	k: 123	n:1890000
Cons ci ratio: 1.166297e-01	ci left: 5.625097e-04	ci right 6.326860e-04	k: 1128	n:1890000
KS ci ratio: 1.702500e-01	ci left: 2.565507e-04	ci right 3.047906e-04	k: 529	n:1890000
WT1   1890000 perm   1794 sec   (1054 perm/sec)   p_kst 2.798942e-04   p_cons 5.968254e-04   p_joint 6.507937e-05

Joint ci ratio: 3.506038e-01	ci left: 5.428280e-05	ci right 7.781231e-05	k: 124	n:1900000
Cons ci ratio: 1.163210e-01	ci left: 5.626151e-04	ci right 6.326059e-04	k: 1134	n:1900000
KS ci ratio: 1.699297e-01	ci left: 2.562083e-04	ci right 3.042838e-04	k: 531	n:1900000
WT1   1900000 perm   1811 sec   (1049 perm/sec)   p_kst 2.794737e-04   p_cons 5.968421e-04   p_joint 6.526316e-05

Joint ci ratio: 3.506039e-01	ci left: 5.399860e-05	ci right 7.740492e-05	k: 124	n:1910000
Cons ci ratio: 1.161167e-01	ci left: 5.617028e-04	ci right 6.314489e-04	k: 1138	n:1910000
KS ci ratio: 1.692944e-01	ci left: 2.568722e-04	ci right 3.048737e-04	k: 535	n:1910000
WT1   1910000 perm   1828 sec   (1045 perm/sec)   p_kst 2.801047e-04   p_cons 5.958115e-04   p_joint 6.492147e-05

Joint ci ratio: 3.506040e-01	ci left: 5.371735e-05	ci right 7.700177e-05	k: 124	n:1920000
Cons ci ratio: 1.158120e-01	ci left: 5.618116e-04	ci right 6.313757e-04	k: 1144	n:1920000
KS ci ratio: 1.689795e-01	ci left: 2.565319e-04	ci right 3.043716e-04	k: 537	n:1920000
WT1   1920000 perm   1845 sec   (1041 perm/sec)   p_kst 2.796875e-04   p_cons 5.958333e-04   p_joint 6.458333e-05

Joint ci ratio: 3.478322e-01	ci left: 5.438441e-05	ci right 7.772960e-05	k: 126	n:1930000
Cons ci ratio: 1.154596e-01	ci left: 5.624227e-04	ci right 6.318362e-04	k: 1151	n:1930000
KS ci ratio: 1.678906e-01	ci left: 2.586768e-04	ci right 3.065742e-04	k: 544	n:1930000
WT1   1930000 perm   1862 sec   (1037 perm/sec)   p_kst 2.818653e-04   p_cons 5.963731e-04   p_joint 6.528497e-05

Joint ci ratio: 3.478323e-01	ci left: 5.410408e-05	ci right 7.732893e-05	k: 126	n:1940000
Cons ci ratio: 1.152099e-01	ci left: 5.620266e-04	ci right 6.312309e-04	k: 1156	n:1940000
KS ci ratio: 1.671256e-01	ci left: 2.598127e-04	ci right 3.076792e-04	k: 549	n:1940000
WT1   1940000 perm   1879 sec   (1032 perm/sec)   p_kst 2.829897e-04   p_cons 5.958763e-04   p_joint 6.494845e-05

Joint ci ratio: 3.478323e-01	ci left: 5.382662e-05	ci right 7.693237e-05	k: 126	n:1950000
Cons ci ratio: 1.150609e-01	ci left: 5.606385e-04	ci right 6.295766e-04	k: 1159	n:1950000
KS ci ratio: 1.665211e-01	ci left: 2.604460e-04	ci right 3.082381e-04	k: 553	n:1950000
WT1   1950000 perm   1896 sec   (1028 perm/sec)   p_kst 2.835897e-04   p_cons 5.943590e-04   p_joint 6.461538e-05

Joint ci ratio: 3.478324e-01	ci left: 5.355199e-05	ci right 7.653986e-05	k: 126	n:1960000
Cons ci ratio: 1.149125e-01	ci left: 5.592647e-04	ci right 6.279391e-04	k: 1162	n:1960000
KS ci ratio: 1.662214e-01	ci left: 2.600951e-04	ci right 3.077284e-04	k: 555	n:1960000
WT1   1960000 perm   1913 sec   (1024 perm/sec)   p_kst 2.831633e-04   p_cons 5.928571e-04   p_joint 6.428571e-05

Joint ci ratio: 3.464710e-01	ci left: 5.374351e-05	ci right 7.670304e-05	k: 127	n:1970000
Cons ci ratio: 1.147646e-01	ci left: 5.579049e-04	ci right 6.263182e-04	k: 1165	n:1970000
KS ci ratio: 1.660722e-01	ci left: 2.592613e-04	ci right 3.066950e-04	k: 556	n:1970000
WT1   1970000 perm   1931 sec   (1020 perm/sec)   p_kst 2.822335e-04   p_cons 5.913706e-04   p_joint 6.446701e-05

Joint ci ratio: 3.451254e-01	ci left: 5.393327e-05	ci right 7.686439e-05	k: 128	n:1980000
Cons ci ratio: 1.145684e-01	ci left: 5.570494e-04	ci right 6.252331e-04	k: 1169	n:1980000
KS ci ratio: 1.657749e-01	ci left: 2.589201e-04	ci right 3.061981e-04	k: 558	n:1980000
WT1   1980000 perm   1948 sec   (1016 perm/sec)   p_kst 2.818182e-04   p_cons 5.904040e-04   p_joint 6.464646e-05

Joint ci ratio: 3.451255e-01	ci left: 5.366225e-05	ci right 7.647814e-05	k: 128	n:1990000
Cons ci ratio: 1.142757e-01	ci left: 5.571789e-04	ci right 6.251926e-04	k: 1175	n:1990000
KS ci ratio: 1.656269e-01	ci left: 2.581006e-04	ci right 3.051827e-04	k: 559	n:1990000
WT1   1990000 perm   1966 sec   (1012 perm/sec)   p_kst 2.809045e-04   p_cons 5.904523e-04   p_joint 6.432161e-05

Joint ci ratio: 3.437955e-01	ci left: 5.385069e-05	ci right 7.663883e-05	k: 129	n:2000000
Cons ci ratio: 1.140336e-01	ci left: 5.568217e-04	ci right 6.246380e-04	k: 1180	n:2000000
KS ci ratio: 1.651850e-01	ci left: 2.582480e-04	ci right 3.052188e-04	k: 562	n:2000000
WT1   2000000 perm   1983 sec   (1008 perm/sec)   p_kst 2.810000e-04   p_cons 5.900000e-04   p_joint 6.450000e-05

Joint ci ratio: 3.437955e-01	ci left: 5.358277e-05	ci right 7.625755e-05	k: 129	n:2010000
Cons ci ratio: 1.135061e-01	ci left: 5.593684e-04	ci right 6.271586e-04	k: 1191	n:2010000
KS ci ratio: 1.650386e-01	ci left: 2.574402e-04	ci right 3.042184e-04	k: 563	n:2010000
WT1   2010000 perm   2001 sec   (1005 perm/sec)   p_kst 2.800995e-04   p_cons 5.925373e-04   p_joint 6.417910e-05

Joint ci ratio: 3.437956e-01	ci left: 5.331751e-05	ci right 7.588004e-05	k: 129	n:2020000
Cons ci ratio: 1.133161e-01	ci left: 5.585232e-04	ci right 6.260902e-04	k: 1195	n:2020000
KS ci ratio: 1.644564e-01	ci left: 2.580643e-04	ci right 3.047741e-04	k: 567	n:2020000
WT1   2020000 perm   2019 sec   (1001 perm/sec)   p_kst 2.806931e-04   p_cons 5.915842e-04   p_joint 6.386139e-05

Joint ci ratio: 3.424809e-01	ci left: 5.350503e-05	ci right 7.604114e-05	k: 130	n:2030000
Cons ci ratio: 1.132216e-01	ci left: 5.567292e-04	ci right 6.240192e-04	k: 1197	n:2030000
KS ci ratio: 1.638803e-01	ci left: 2.586825e-04	ci right 3.053241e-04	k: 571	n:2030000
WT1   2030000 perm   2036 sec   (997 perm/sec)   p_kst 2.812808e-04   p_cons 5.896552e-04   p_joint 6.403941e-05

Joint ci ratio: 3.411811e-01	ci left: 5.369087e-05	ci right 7.620051e-05	k: 131	n:2040000
Cons ci ratio: 1.128923e-01	ci left: 5.573344e-04	ci right 6.244886e-04	k: 1204	n:2040000
KS ci ratio: 1.634522e-01	ci left: 2.588248e-04	ci right 3.053582e-04	k: 574	n:2040000
WT1   2040000 perm   2054 sec   (993 perm/sec)   p_kst 2.813725e-04   p_cons 5.901961e-04   p_joint 6.421569e-05

Joint ci ratio: 3.492105e-01	ci left: 5.075581e-05	ci right 7.264926e-05	k: 125	n:2050000
Cons ci ratio: 1.127988e-01	ci left: 5.555638e-04	ci right 6.224455e-04	k: 1206	n:2050000
KS ci ratio: 1.630275e-01	ci left: 2.589659e-04	ci right 3.053918e-04	k: 577	n:2050000
WT1   2050000 perm   2073 sec   (989 perm/sec)   p_kst 2.814634e-04   p_cons 5.882927e-04   p_joint 6.097561e-05

Joint ci ratio: 3.451259e-01	ci left: 5.183877e-05	ci right 7.387938e-05	k: 128	n:2060000
Cons ci ratio: 1.121500e-01	ci left: 5.594719e-04	ci right 6.264111e-04	k: 1220	n:2060000
KS ci ratio: 1.626060e-01	ci left: 2.591058e-04	ci right 3.054249e-04	k: 580	n:2060000
WT1   2060000 perm   2090 sec   (985 perm/sec)   p_kst 2.815534e-04   p_cons 5.922330e-04   p_joint 6.213592e-05

Joint ci ratio: 3.437959e-01	ci left: 5.202964e-05	ci right 7.404720e-05	k: 129	n:2070000
Cons ci ratio: 1.120126e-01	ci left: 5.581777e-04	ci right 6.248748e-04	k: 1223	n:2070000
KS ci ratio: 1.624663e-01	ci left: 2.583175e-04	ci right 3.044521e-04	k: 581	n:2070000
WT1   2070000 perm   2109 sec   (982 perm/sec)   p_kst 2.806763e-04   p_cons 5.908213e-04   p_joint 6.231884e-05

Joint ci ratio: 3.424811e-01	ci left: 5.221884e-05	ci right 7.421324e-05	k: 130	n:2080000
Cons ci ratio: 1.118756e-01	ci left: 5.568961e-04	ci right 6.233533e-04	k: 1226	n:2080000
KS ci ratio: 1.621879e-01	ci left: 2.579980e-04	ci right 3.039890e-04	k: 583	n:2080000
WT1   2080000 perm   2127 sec   (978 perm/sec)   p_kst 2.802885e-04   p_cons 5.894231e-04   p_joint 6.250000e-05

Joint ci ratio: 3.398962e-01	ci left: 5.284395e-05	ci right 7.489677e-05	k: 132	n:2090000
Cons ci ratio: 1.116938e-01	ci left: 5.560919e-04	ci right 6.223381e-04	k: 1230	n:2090000
KS ci ratio: 1.620493e-01	ci left: 2.572226e-04	ci right 3.030324e-04	k: 584	n:2090000
WT1   2090000 perm   2145 sec   (974 perm/sec)   p_kst 2.794258e-04   p_cons 5.885167e-04   p_joint 6.315789e-05

Joint ci ratio: 3.386255e-01	ci left: 5.302794e-05	ci right 7.505672e-05	k: 133	n:2100000
Cons ci ratio: 1.114677e-01	ci left: 5.557583e-04	ci right 6.218220e-04	k: 1235	n:2100000
KS ci ratio: 1.619111e-01	ci left: 2.564547e-04	ci right 3.020848e-04	k: 585	n:2100000
WT1   2100000 perm   2163 sec   (971 perm/sec)   p_kst 2.785714e-04   p_cons 5.880952e-04   p_joint 6.333333e-05

Joint ci ratio: 3.386256e-01	ci left: 5.277662e-05	ci right 7.470100e-05	k: 133	n:2110000
Cons ci ratio: 1.112878e-01	ci left: 5.549673e-04	ci right 6.208235e-04	k: 1239	n:2110000
KS ci ratio: 1.619112e-01	ci left: 2.552392e-04	ci right 3.006532e-04	k: 585	n:2110000
WT1   2110000 perm   2182 sec   (967 perm/sec)   p_kst 2.772512e-04   p_cons 5.872038e-04   p_joint 6.303318e-05

Joint ci ratio: 3.373691e-01	ci left: 5.295934e-05	ci right 7.486022e-05	k: 134	n:2120000
Cons ci ratio: 1.109750e-01	ci left: 5.555596e-04	ci right 6.212887e-04	k: 1246	n:2120000
KS ci ratio: 1.609526e-01	ci left: 2.572038e-04	ci right 3.026701e-04	k: 592	n:2120000
WT1   2120000 perm   2200 sec   (963 perm/sec)   p_kst 2.792453e-04   p_cons 5.877358e-04   p_joint 6.320755e-05

Joint ci ratio: 3.373691e-01	ci left: 5.271070e-05	ci right 7.450877e-05	k: 134	n:2130000
Cons ci ratio: 1.105766e-01	ci left: 5.570597e-04	ci right 6.227142e-04	k: 1255	n:2130000
KS ci ratio: 1.608171e-01	ci left: 2.564468e-04	ci right 3.017375e-04	k: 593	n:2130000
WT1   2130000 perm   2219 sec   (960 perm/sec)   p_kst 2.784038e-04   p_cons 5.892019e-04   p_joint 6.291080e-05

Joint ci ratio: 3.373692e-01	ci left: 5.246439e-05	ci right 7.416060e-05	k: 134	n:2140000
Cons ci ratio: 1.104009e-01	ci left: 5.562741e-04	ci right 6.217252e-04	k: 1259	n:2140000
KS ci ratio: 1.604125e-01	ci left: 2.565940e-04	ci right 3.017857e-04	k: 596	n:2140000
WT1   2140000 perm   2238 sec   (956 perm/sec)   p_kst 2.785047e-04   p_cons 5.883178e-04   p_joint 6.261682e-05

Joint ci ratio: 3.437963e-01	ci left: 5.009365e-05	ci right 7.129197e-05	k: 129	n:2150000
Cons ci ratio: 1.101390e-01	ci left: 5.564005e-04	ci right 6.217010e-04	k: 1265	n:2150000
KS ci ratio: 1.600110e-01	ci left: 2.567399e-04	ci right 3.018333e-04	k: 599	n:2150000
WT1   2150000 perm   2257 sec   (953 perm/sec)   p_kst 2.786047e-04   p_cons 5.883721e-04   p_joint 6.000000e-05

Joint ci ratio: 3.386258e-01	ci left: 5.155493e-05	ci right 7.297182e-05	k: 133	n:2160000
Cons ci ratio: 1.098789e-01	ci left: 5.565259e-04	ci right 6.216770e-04	k: 1271	n:2160000
KS ci ratio: 1.594802e-01	ci left: 2.573292e-04	ci right 3.023617e-04	k: 603	n:2160000
WT1   2160000 perm   2275 sec   (949 perm/sec)   p_kst 2.791667e-04   p_cons 5.884259e-04   p_joint 6.157407e-05

Joint ci ratio: 3.386259e-01	ci left: 5.131735e-05	ci right 7.263555e-05	k: 133	n:2170000
Cons ci ratio: 1.097066e-01	ci left: 5.557540e-04	ci right 6.207060e-04	k: 1275	n:2170000
KS ci ratio: 1.590856e-01	ci left: 2.574707e-04	ci right 3.024059e-04	k: 606	n:2170000
WT1   2170000 perm   2294 sec   (946 perm/sec)   p_kst 2.792627e-04   p_cons 5.875576e-04   p_joint 6.129032e-05

Joint ci ratio: 3.373694e-01	ci left: 5.150174e-05	ci right 7.279986e-05	k: 134	n:2180000
Cons ci ratio: 1.094496e-01	ci left: 5.558815e-04	ci right 6.206865e-04	k: 1281	n:2180000
KS ci ratio: 1.586939e-01	ci left: 2.576111e-04	ci right 3.024495e-04	k: 609	n:2180000
WT1   2180000 perm   2314 sec   (942 perm/sec)   p_kst 2.793578e-04   p_cons 5.876147e-04   p_joint 6.146789e-05

Joint ci ratio: 3.373694e-01	ci left: 5.126657e-05	ci right 7.246744e-05	k: 134	n:2190000
Cons ci ratio: 1.091944e-01	ci left: 5.560080e-04	ci right 6.206669e-04	k: 1287	n:2190000
KS ci ratio: 1.580474e-01	ci left: 2.586274e-04	ci right 3.034420e-04	k: 614	n:2190000
WT1   2190000 perm   2333 sec   (939 perm/sec)   p_kst 2.803653e-04   p_cons 5.876712e-04   p_joint 6.118721e-05

Joint ci ratio: 3.373695e-01	ci left: 5.103354e-05	ci right 7.213805e-05	k: 134	n:2200000
Cons ci ratio: 1.091098e-01	ci left: 5.543650e-04	ci right 6.187796e-04	k: 1289	n:2200000
KS ci ratio: 1.576633e-01	ci left: 2.587616e-04	ci right 3.034802e-04	k: 617	n:2200000
WT1   2200000 perm   2352 sec   (935 perm/sec)   p_kst 2.804545e-04   p_cons 5.859091e-04   p_joint 6.090909e-05

Joint ci ratio: 3.451266e-01	ci left: 4.832028e-05	ci right 6.886497e-05	k: 128	n:2210000
Cons ci ratio: 1.088149e-01	ci left: 5.549377e-04	ci right 6.192334e-04	k: 1296	n:2210000
KS ci ratio: 1.571555e-01	ci left: 2.593294e-04	ci right 3.039881e-04	k: 621	n:2210000
WT1   2210000 perm   2371 sec   (932 perm/sec)   p_kst 2.809955e-04   p_cons 5.864253e-04   p_joint 5.791855e-05

Joint ci ratio: 3.437966e-01	ci left: 4.851411e-05	ci right 6.904404e-05	k: 129	n:2220000
Cons ci ratio: 1.085641e-01	ci left: 5.550672e-04	ci right 6.192202e-04	k: 1302	n:2220000
KS ci ratio: 1.567779e-01	ci left: 2.594595e-04	ci right 3.040232e-04	k: 624	n:2220000
WT1   2220000 perm   2391 sec   (929 perm/sec)   p_kst 2.810811e-04   p_cons 5.864865e-04   p_joint 5.810811e-05

Joint ci ratio: 3.478338e-01	ci left: 4.706809e-05	ci right 6.727276e-05	k: 126	n:2230000
Cons ci ratio: 1.084810e-01	ci left: 5.534506e-04	ci right 6.173646e-04	k: 1304	n:2230000
KS ci ratio: 1.561544e-01	ci left: 2.604504e-04	ci right 3.049897e-04	k: 629	n:2230000
WT1   2230000 perm   2410 sec   (925 perm/sec)   p_kst 2.820628e-04   p_cons 5.847534e-04   p_joint 5.650224e-05

Joint ci ratio: 3.478338e-01	ci left: 4.685796e-05	ci right 6.697243e-05	k: 126	n:2240000
Cons ci ratio: 1.082738e-01	ci left: 5.531514e-04	ci right 6.169012e-04	k: 1309	n:2240000
KS ci ratio: 1.557840e-01	ci left: 2.605747e-04	ci right 3.050197e-04	k: 632	n:2240000
WT1   2240000 perm   2429 sec   (922 perm/sec)   p_kst 2.821429e-04   p_cons 5.843750e-04   p_joint 5.625000e-05

Joint ci ratio: 3.520166e-01	ci left: 4.543354e-05	ci right 6.522473e-05	k: 123	n:2250000
Cons ci ratio: 1.080678e-01	ci left: 5.528551e-04	ci right 6.164417e-04	k: 1314	n:2250000
KS ci ratio: 1.556611e-01	ci left: 2.598437e-04	ci right 3.041258e-04	k: 633	n:2250000
WT1   2250000 perm   2449 sec   (919 perm/sec)   p_kst 2.813333e-04   p_cons 5.840000e-04   p_joint 5.466667e-05

Joint ci ratio: 3.520167e-01	ci left: 4.523251e-05	ci right 6.493613e-05	k: 123	n:2260000
Cons ci ratio: 1.078629e-01	ci left: 5.525615e-04	ci right 6.159862e-04	k: 1319	n:2260000
KS ci ratio: 1.554162e-01	ci left: 2.595445e-04	ci right 3.036995e-04	k: 635	n:2260000
WT1   2260000 perm   2468 sec   (916 perm/sec)   p_kst 2.809735e-04   p_cons 5.836283e-04   p_joint 5.442478e-05

Joint ci ratio: 3.520167e-01	ci left: 4.503325e-05	ci right 6.465007e-05	k: 123	n:2270000
Cons ci ratio: 1.076186e-01	ci left: 5.526992e-04	ci right 6.159870e-04	k: 1325	n:2270000
KS ci ratio: 1.552942e-01	ci left: 2.588245e-04	ci right 3.028193e-04	k: 636	n:2270000
WT1   2270000 perm   2488 sec   (912 perm/sec)   p_kst 2.801762e-04   p_cons 5.837004e-04   p_joint 5.418502e-05

Joint ci ratio: 3.520167e-01	ci left: 4.483573e-05	ci right 6.436652e-05	k: 123	n:2280000
Cons ci ratio: 1.072150e-01	ci left: 5.545433e-04	ci right 6.177890e-04	k: 1335	n:2280000
KS ci ratio: 1.550510e-01	ci left: 2.585324e-04	ci right 3.024023e-04	k: 638	n:2280000
WT1   2280000 perm   2508 sec   (909 perm/sec)   p_kst 2.798246e-04   p_cons 5.855263e-04   p_joint 5.394737e-05

Joint ci ratio: 3.506058e-01	ci left: 4.503809e-05	ci right 6.456050e-05	k: 124	n:2290000
Cons ci ratio: 1.070949e-01	ci left: 5.533966e-04	ci right 6.164364e-04	k: 1338	n:2290000
KS ci ratio: 1.545680e-01	ci left: 2.590825e-04	ci right 3.028961e-04	k: 642	n:2290000
WT1   2290000 perm   2528 sec   (906 perm/sec)   p_kst 2.803493e-04   p_cons 5.842795e-04   p_joint 5.414847e-05

Joint ci ratio: 3.478341e-01	ci left: 4.563557e-05	ci right 6.522533e-05	k: 126	n:2300000
Cons ci ratio: 1.069353e-01	ci left: 5.526831e-04	ci right 6.155419e-04	k: 1342	n:2300000
KS ci ratio: 1.538517e-01	ci left: 2.604641e-04	ci right 3.042884e-04	k: 648	n:2300000
WT1   2300000 perm   2548 sec   (903 perm/sec)   p_kst 2.817391e-04   p_cons 5.834783e-04   p_joint 5.478261e-05

Joint ci ratio: 3.464726e-01	ci left: 4.583318e-05	ci right 6.541347e-05	k: 127	n:2310000
Cons ci ratio: 1.066577e-01	ci left: 5.532399e-04	ci right 6.159884e-04	k: 1349	n:2310000
KS ci ratio: 1.538518e-01	ci left: 2.593366e-04	ci right 3.029712e-04	k: 648	n:2310000
WT1   2310000 perm   2568 sec   (899 perm/sec)   p_kst 2.805195e-04   p_cons 5.839827e-04   p_joint 5.497835e-05

Joint ci ratio: 3.464727e-01	ci left: 4.563562e-05	ci right 6.513152e-05	k: 127	n:2320000
Cons ci ratio: 1.063430e-01	ci left: 5.542117e-04	ci right 6.168734e-04	k: 1357	n:2320000
KS ci ratio: 1.536153e-01	ci left: 2.590476e-04	ci right 3.025605e-04	k: 650	n:2320000
WT1   2320000 perm   2589 sec   (896 perm/sec)   p_kst 2.801724e-04   p_cons 5.849138e-04   p_joint 5.474138e-05

Joint ci ratio: 3.464727e-01	ci left: 4.543976e-05	ci right 6.485198e-05	k: 127	n:2330000
Cons ci ratio: 1.061868e-01	ci left: 5.535042e-04	ci right 6.159882e-04	k: 1361	n:2330000
KS ci ratio: 1.533799e-01	ci left: 2.587613e-04	ci right 3.021533e-04	k: 652	n:2330000
WT1   2330000 perm   2609 sec   (893 perm/sec)   p_kst 2.798283e-04   p_cons 5.841202e-04   p_joint 5.450644e-05

Joint ci ratio: 3.451272e-01	ci left: 4.563581e-05	ci right 6.503916e-05	k: 128	n:2340000
Cons ci ratio: 1.059924e-01	ci left: 5.532188e-04	ci right 6.155492e-04	k: 1366	n:2340000
KS ci ratio: 1.527960e-01	ci left: 2.597103e-04	ci right 3.030805e-04	k: 657	n:2340000
WT1   2340000 perm   2630 sec   (890 perm/sec)   p_kst 2.807692e-04   p_cons 5.837607e-04   p_joint 5.470085e-05

Joint ci ratio: 3.437972e-01	ci left: 4.583034e-05	ci right 6.522460e-05	k: 129	n:2350000
Cons ci ratio: 1.057991e-01	ci left: 5.529360e-04	ci right 6.151139e-04	k: 1371	n:2350000
KS ci ratio: 1.519895e-01	ci left: 2.614704e-04	ci right 3.048830e-04	k: 664	n:2350000
WT1   2350000 perm   2650 sec   (887 perm/sec)   p_kst 2.825532e-04   p_cons 5.834043e-04   p_joint 5.489362e-05

Joint ci ratio: 3.437972e-01	ci left: 4.563614e-05	ci right 6.494822e-05	k: 129	n:2360000
Cons ci ratio: 1.056453e-01	ci left: 5.522432e-04	ci right 6.142472e-04	k: 1375	n:2360000
KS ci ratio: 1.518754e-01	ci left: 2.607700e-04	ci right 3.040310e-04	k: 665	n:2360000
WT1   2360000 perm   2671 sec   (884 perm/sec)   p_kst 2.817797e-04   p_cons 5.826271e-04   p_joint 5.466102e-05

Joint ci ratio: 3.424825e-01	ci left: 4.582917e-05	ci right 6.513234e-05	k: 130	n:2370000
Cons ci ratio: 1.054157e-01	ci left: 5.523779e-04	ci right 6.142539e-04	k: 1381	n:2370000
KS ci ratio: 1.514214e-01	ci left: 2.612935e-04	ci right 3.044999e-04	k: 669	n:2370000
WT1   2370000 perm   2691 sec   (881 perm/sec)   p_kst 2.822785e-04   p_cons 5.827004e-04   p_joint 5.485232e-05

Joint ci ratio: 3.424825e-01	ci left: 4.563661e-05	ci right 6.485868e-05	k: 130	n:2380000
Cons ci ratio: 1.050740e-01	ci left: 5.537389e-04	ci right 6.155540e-04	k: 1390	n:2380000
KS ci ratio: 1.509713e-01	ci left: 2.618127e-04	ci right 3.049647e-04	k: 673	n:2380000
WT1   2380000 perm   2712 sec   (878 perm/sec)   p_kst 2.827731e-04   p_cons 5.840336e-04   p_joint 5.462185e-05

Joint ci ratio: 3.424825e-01	ci left: 4.544566e-05	ci right 6.458730e-05	k: 130	n:2390000
Cons ci ratio: 1.047357e-01	ci left: 5.550889e-04	ci right 6.168429e-04	k: 1399	n:2390000
KS ci ratio: 1.508595e-01	ci left: 2.611198e-04	ci right 3.041229e-04	k: 674	n:2390000
WT1   2390000 perm   2732 sec   (875 perm/sec)   p_kst 2.820084e-04   p_cons 5.853556e-04   p_joint 5.439331e-05

Joint ci ratio: 3.424826e-01	ci left: 4.525630e-05	ci right 6.431819e-05	k: 130	n:2400000
Cons ci ratio: 1.046610e-01	ci left: 5.535876e-04	ci right 6.151279e-04	k: 1401	n:2400000
KS ci ratio: 1.505254e-01	ci left: 2.612347e-04	ci right 3.041528e-04	k: 677	n:2400000
WT1   2400000 perm   2753 sec   (872 perm/sec)   p_kst 2.820833e-04   p_cons 5.837500e-04   p_joint 5.416667e-05

Joint ci ratio: 3.424826e-01	ci left: 4.506851e-05	ci right 6.405131e-05	k: 130	n:2410000
Cons ci ratio: 1.044749e-01	ci left: 5.533109e-04	ci right 6.147044e-04	k: 1406	n:2410000
KS ci ratio: 1.501935e-01	ci left: 2.613487e-04	ci right 3.041824e-04	k: 680	n:2410000
WT1   2410000 perm   2774 sec   (869 perm/sec)   p_kst 2.821577e-04   p_cons 5.834025e-04   p_joint 5.394191e-05

Joint ci ratio: 3.424826e-01	ci left: 4.488228e-05	ci right 6.378664e-05	k: 130	n:2420000
Cons ci ratio: 1.043268e-01	ci left: 5.526343e-04	ci right 6.138603e-04	k: 1410	n:2420000
KS ci ratio: 1.499734e-01	ci left: 2.610642e-04	ci right 3.037829e-04	k: 682	n:2420000
WT1   2420000 perm   2795 sec   (866 perm/sec)   p_kst 2.818182e-04   p_cons 5.826446e-04   p_joint 5.371901e-05

Joint ci ratio: 3.411829e-01	ci left: 4.507378e-05	ci right 6.397086e-05	k: 131	n:2430000
Cons ci ratio: 1.040322e-01	ci left: 5.535665e-04	ci right 6.147121e-04	k: 1418	n:2430000
KS ci ratio: 1.495362e-01	ci left: 2.615743e-04	ci right 3.042405e-04	k: 686	n:2430000
WT1   2430000 perm   2816 sec   (863 perm/sec)   p_kst 2.823045e-04   p_cons 5.835391e-04   p_joint 5.390947e-05

Joint ci ratio: 3.398978e-01	ci left: 4.526384e-05	ci right 6.415343e-05	k: 132	n:2440000
Cons ci ratio: 1.037038e-01	ci left: 5.548905e-04	ci right 6.159770e-04	k: 1427	n:2440000
KS ci ratio: 1.493190e-01	ci left: 2.612913e-04	ci right 3.038439e-04	k: 688	n:2440000
WT1   2440000 perm   2837 sec   (860 perm/sec)   p_kst 2.819672e-04   p_cons 5.848361e-04   p_joint 5.409836e-05

Joint ci ratio: 3.386271e-01	ci left: 4.545249e-05	ci right 6.433438e-05	k: 133	n:2450000
Cons ci ratio: 1.035589e-01	ci left: 5.542159e-04	ci right 6.151378e-04	k: 1431	n:2450000
KS ci ratio: 1.491028e-01	ci left: 2.610106e-04	ci right 3.034505e-04	k: 690	n:2450000
WT1   2450000 perm   2858 sec   (857 perm/sec)   p_kst 2.816327e-04   p_cons 5.840816e-04   p_joint 5.428571e-05

Joint ci ratio: 3.373706e-01	ci left: 4.563973e-05	ci right 6.451374e-05	k: 134	n:2460000
Cons ci ratio: 1.032350e-01	ci left: 5.555270e-04	ci right 6.163904e-04	k: 1440	n:2460000
KS ci ratio: 1.491029e-01	ci left: 2.599496e-04	ci right 3.022170e-04	k: 690	n:2460000
WT1   2460000 perm   2879 sec   (854 perm/sec)   p_kst 2.804878e-04   p_cons 5.853659e-04   p_joint 5.447154e-05

Joint ci ratio: 3.373706e-01	ci left: 4.545495e-05	ci right 6.425255e-05	k: 134	n:2470000
Cons ci ratio: 1.030563e-01	ci left: 5.552499e-04	ci right 6.159713e-04	k: 1445	n:2470000
KS ci ratio: 1.488876e-01	ci left: 2.596767e-04	ci right 3.018333e-04	k: 692	n:2470000
WT1   2470000 perm   2900 sec   (852 perm/sec)   p_kst 2.801619e-04   p_cons 5.850202e-04   p_joint 5.425101e-05

Joint ci ratio: 3.373706e-01	ci left: 4.527166e-05	ci right 6.399347e-05	k: 134	n:2480000
Cons ci ratio: 1.028078e-01	ci left: 5.557610e-04	ci right 6.163828e-04	k: 1452	n:2480000
KS ci ratio: 1.484597e-01	ci left: 2.601825e-04	ci right 3.022891e-04	k: 696	n:2480000
WT1   2480000 perm   2922 sec   (849 perm/sec)   p_kst 2.806452e-04   p_cons 5.854839e-04   p_joint 5.403226e-05

Joint ci ratio: 3.361280e-01	ci left: 4.545750e-05	ci right 6.417190e-05	k: 135	n:2490000
Cons ci ratio: 1.027019e-01	ci left: 5.547028e-04	ci right 6.151432e-04	k: 1455	n:2490000
KS ci ratio: 1.482472e-01	ci left: 2.599110e-04	ci right 3.019081e-04	k: 698	n:2490000
WT1   2490000 perm   2944 sec   (846 perm/sec)   p_kst 2.803213e-04   p_cons 5.843373e-04   p_joint 5.421687e-05

Joint ci ratio: 3.361280e-01	ci left: 4.527567e-05	ci right 6.391522e-05	k: 135	n:2500000
Cons ci ratio: 1.025260e-01	ci left: 5.544327e-04	ci right 6.147339e-04	k: 1460	n:2500000
KS ci ratio: 1.478248e-01	ci left: 2.604121e-04	ci right 3.023597e-04	k: 702	n:2500000
WT1   2500000 perm   2965 sec   (843 perm/sec)   p_kst 2.808000e-04   p_cons 5.840000e-04   p_joint 5.400000e-05

Joint ci ratio: 3.361281e-01	ci left: 4.509529e-05	ci right 6.366058e-05	k: 135	n:2510000
Cons ci ratio: 1.023510e-01	ci left: 5.541648e-04	ci right 6.143278e-04	k: 1465	n:2510000
KS ci ratio: 1.474060e-01	ci left: 2.609094e-04	ci right 3.028075e-04	k: 706	n:2510000
WT1   2510000 perm   2987 sec   (840 perm/sec)   p_kst 2.812749e-04   p_cons 5.836653e-04   p_joint 5.378486e-05

Joint ci ratio: 3.348990e-01	ci left: 4.527974e-05	ci right 6.383809e-05	k: 136	n:2520000
Cons ci ratio: 1.021422e-01	ci left: 5.542858e-04	ci right 6.143318e-04	k: 1471	n:2520000
KS ci ratio: 1.467844e-01	ci left: 2.621674e-04	ci right 3.040744e-04	k: 712	n:2520000
WT1   2520000 perm   3008 sec   (838 perm/sec)   p_kst 2.825397e-04   p_cons 5.837302e-04   p_joint 5.396825e-05

Joint ci ratio: 3.336834e-01	ci left: 4.546285e-05	ci right 6.401407e-05	k: 137	n:2530000
Cons ci ratio: 1.019692e-01	ci left: 5.540208e-04	ci right 6.139303e-04	k: 1476	n:2530000
KS ci ratio: 1.466816e-01	ci left: 2.615119e-04	ci right 3.032823e-04	k: 713	n:2530000
WT1   2530000 perm   3030 sec   (835 perm/sec)   p_kst 2.818182e-04   p_cons 5.833992e-04   p_joint 5.415020e-05

Joint ci ratio: 3.336834e-01	ci left: 4.528386e-05	ci right 6.376205e-05	k: 137	n:2540000
Cons ci ratio: 1.016941e-01	ci left: 5.549090e-04	ci right 6.147431e-04	k: 1484	n:2540000
KS ci ratio: 1.464766e-01	ci left: 2.612408e-04	ci right 3.029045e-04	k: 715	n:2540000
WT1   2540000 perm   3052 sec   (832 perm/sec)   p_kst 2.814961e-04   p_cons 5.842520e-04   p_joint 5.393701e-05

Joint ci ratio: 3.336835e-01	ci left: 4.510628e-05	ci right 6.351200e-05	k: 137	n:2550000
Cons ci ratio: 1.015575e-01	ci left: 5.542616e-04	ci right 6.139408e-04	k: 1488	n:2550000
KS ci ratio: 1.462725e-01	ci left: 2.609719e-04	ci right 3.025297e-04	k: 717	n:2550000
WT1   2550000 perm   3074 sec   (830 perm/sec)   p_kst 2.811765e-04   p_cons 5.835294e-04   p_joint 5.372549e-05

Joint ci ratio: 3.336835e-01	ci left: 4.493008e-05	ci right 6.326391e-05	k: 137	n:2560000
Cons ci ratio: 1.012181e-01	ci left: 5.559038e-04	ci right 6.155478e-04	k: 1498	n:2560000
KS ci ratio: 1.460692e-01	ci left: 2.607052e-04	ci right 3.021577e-04	k: 719	n:2560000
WT1   2560000 perm   3096 sec   (827 perm/sec)   p_kst 2.808594e-04   p_cons 5.851562e-04   p_joint 5.351563e-05

Joint ci ratio: 2.897644e-01	ci left: 6.090229e-05	ci right 8.188592e-05	k: 182	n:2570000
Cons ci ratio: 1.009825e-01	ci left: 5.563956e-04	ci right 6.159453e-04	k: 1505	n:2570000
KS ci ratio: 1.457658e-01	ci left: 2.608155e-04	ci right 3.021919e-04	k: 722	n:2570000
WT1   2570000 perm   3119 sec   (824 perm/sec)   p_kst 2.809339e-04   p_cons 5.856031e-04   p_joint 7.081712e-05

Joint ci ratio: 2.889759e-01	ci left: 6.102571e-05	ci right 8.198418e-05	k: 183	n:2580000
Cons ci ratio: 1.008153e-01	ci left: 5.561281e-04	ci right 6.155448e-04	k: 1510	n:2580000
KS ci ratio: 1.452643e-01	ci left: 2.616720e-04	ci right 3.030291e-04	k: 727	n:2580000
WT1   2580000 perm   3141 sec   (821 perm/sec)   p_kst 2.817829e-04   p_cons 5.852713e-04   p_joint 7.093023e-05

Joint ci ratio: 2.881938e-01	ci left: 6.114824e-05	ci right 8.208161e-05	k: 184	n:2590000
Cons ci ratio: 1.006489e-01	ci left: 5.558627e-04	ci right 6.151473e-04	k: 1515	n:2590000
KS ci ratio: 1.448669e-01	ci left: 2.621500e-04	ci right 3.034595e-04	k: 731	n:2590000
WT1   2590000 perm   3164 sec   (819 perm/sec)   p_kst 2.822394e-04   p_cons 5.849421e-04   p_joint 7.104247e-05

Joint ci ratio: 2.866484e-01	ci left: 6.162685e-05	ci right 8.259044e-05	k: 186	n:2600000
Cons ci ratio: 1.005165e-01	ci left: 5.552246e-04	ci right 6.143585e-04	k: 1519	n:2600000
KS ci ratio: 1.444726e-01	ci left: 2.626245e-04	ci right 3.038865e-04	k: 735	n:2600000
WT1   2600000 perm   3186 sec   (816 perm/sec)   p_kst 2.826923e-04   p_cons 5.842308e-04   p_joint 7.153846e-05

Joint ci ratio: 2.858850e-01	ci left: 6.174636e-05	ci right 8.268458e-05	k: 187	n:2610000
Cons ci ratio: 1.002529e-01	ci left: 5.560855e-04	ci right 6.151467e-04	k: 1527	n:2610000
KS ci ratio: 1.443746e-01	ci left: 2.619876e-04	ci right 3.031191e-04	k: 736	n:2610000
WT1   2610000 perm   3208 sec   (813 perm/sec)   p_kst 2.819923e-04   p_cons 5.850575e-04   p_joint 7.164751e-05

Joint ci ratio: 2.858851e-01	ci left: 6.151069e-05	ci right 8.236899e-05	k: 187	n:2620000
Cons ci ratio: 1.000241e-01	ci left: 5.565678e-04	ci right 6.155374e-04	k: 1534	n:2620000
KS ci ratio: 1.443747e-01	ci left: 2.609876e-04	ci right 3.019622e-04	k: 736	n:2620000
WT1   2620000 perm   3231 sec   (811 perm/sec)   p_kst 2.809160e-04   p_cons 5.854962e-04   p_joint 7.137405e-05

Joint ci ratio: 2.851277e-01	ci left: 6.162982e-05	ci right 8.246318e-05	k: 188	n:2630000
Cons ci ratio: 9.989404e-02	ci left: 5.559345e-04	ci right 6.147559e-04	k: 1538	n:2630000
KS ci ratio: 1.440818e-01	ci left: 2.610948e-04	ci right 3.019959e-04	k: 739	n:2630000
WT1   2630000 perm   3254 sec   (808 perm/sec)   p_kst 2.809886e-04   p_cons 5.847909e-04   p_joint 7.148289e-05

Joint ci ratio: 2.836309e-01	ci left: 6.209992e-05	ci right 8.296227e-05	k: 190	n:2640000
Cons ci ratio: 9.973218e-02	ci left: 5.556753e-04	ci right 6.143685e-04	k: 1543	n:2640000
KS ci ratio: 1.437906e-01	ci left: 2.612013e-04	ci right 3.020292e-04	k: 742	n:2640000
WT1   2640000 perm   3276 sec   (806 perm/sec)   p_kst 2.810606e-04   p_cons 5.844697e-04   p_joint 7.196970e-05

Joint ci ratio: 2.821574e-01	ci left: 6.256676e-05	ci right 8.345732e-05	k: 192	n:2650000
Cons ci ratio: 9.960328e-02	ci left: 5.550503e-04	ci right 6.135972e-04	k: 1547	n:2650000
KS ci ratio: 1.435975e-01	ci left: 2.609432e-04	ci right 3.016713e-04	k: 744	n:2650000
WT1   2650000 perm   3299 sec   (803 perm/sec)   p_kst 2.807547e-04   p_cons 5.837736e-04   p_joint 7.245283e-05

Joint ci ratio: 2.821575e-01	ci left: 6.233155e-05	ci right 8.314358e-05	k: 192	n:2660000
Cons ci ratio: 9.941080e-02	ci left: 5.551631e-04	ci right 6.136022e-04	k: 1553	n:2660000
KS ci ratio: 1.433092e-01	ci left: 2.610495e-04	ci right 3.017055e-04	k: 747	n:2660000
WT1   2660000 perm   3321 sec   (801 perm/sec)   p_kst 2.808271e-04   p_cons 5.838346e-04   p_joint 7.218045e-05

Joint ci ratio: 2.814293e-01	ci left: 6.244617e-05	ci right 8.323311e-05	k: 193	n:2670000
Cons ci ratio: 9.931504e-02	ci left: 5.541795e-04	ci right 6.124556e-04	k: 1556	n:2670000
KS ci ratio: 1.430227e-01	ci left: 2.611552e-04	ci right 3.017393e-04	k: 750	n:2670000
WT1   2670000 perm   3344 sec   (799 perm/sec)   p_kst 2.808989e-04   p_cons 5.827715e-04   p_joint 7.228464e-05

Joint ci ratio: 2.814294e-01	ci left: 6.221316e-05	ci right 8.292254e-05	k: 193	n:2680000
Cons ci ratio: 9.906083e-02	ci left: 5.550227e-04	ci right 6.132294e-04	k: 1564	n:2680000
KS ci ratio: 1.425489e-01	ci left: 2.619797e-04	ci right 3.025457e-04	k: 755	n:2680000
WT1   2680000 perm   3367 sec   (796 perm/sec)   p_kst 2.817164e-04   p_cons 5.835821e-04   p_joint 7.201493e-05

Joint ci ratio: 2.807068e-01	ci left: 6.232743e-05	ci right 8.301215e-05	k: 194	n:2690000
Cons ci ratio: 9.887148e-02	ci left: 5.551347e-04	ci right 6.132354e-04	k: 1570	n:2690000
KS ci ratio: 1.422669e-01	ci left: 2.620813e-04	ci right 3.025759e-04	k: 758	n:2690000
WT1   2690000 perm   3390 sec   (794 perm/sec)   p_kst 2.817844e-04   p_cons 5.836431e-04   p_joint 7.211896e-05

Joint ci ratio: 2.807068e-01	ci left: 6.209659e-05	ci right 8.270470e-05	k: 194	n:2700000
Cons ci ratio: 9.877726e-02	ci left: 5.541623e-04	ci right 6.121027e-04	k: 1573	n:2700000
KS ci ratio: 1.421733e-01	ci left: 2.614678e-04	ci right 3.018388e-04	k: 759	n:2700000
WT1   2700000 perm   3413 sec   (791 perm/sec)   p_kst 2.811111e-04   p_cons 5.825926e-04   p_joint 7.185185e-05

Joint ci ratio: 2.785720e-01	ci left: 6.289684e-05	ci right 8.358395e-05	k: 197	n:2710000
Cons ci ratio: 9.858953e-02	ci left: 5.542768e-04	ci right 6.121127e-04	k: 1579	n:2710000
KS ci ratio: 1.414307e-01	ci left: 2.633503e-04	ci right 3.037817e-04	k: 767	n:2710000
WT1   2710000 perm   3436 sec   (789 perm/sec)   p_kst 2.830258e-04   p_cons 5.826568e-04   p_joint 7.269373e-05

Joint ci ratio: 2.778712e-01	ci left: 6.300761e-05	ci right 8.366989e-05	k: 198	n:2720000
Cons ci ratio: 9.837184e-02	ci left: 5.547492e-04	ci right 6.124992e-04	k: 1586	n:2720000
KS ci ratio: 1.410638e-01	ci left: 2.638008e-04	ci right 3.041874e-04	k: 771	n:2720000
WT1   2720000 perm   3459 sec   (786 perm/sec)   p_kst 2.834559e-04   p_cons 5.830882e-04   p_joint 7.279412e-05

Joint ci ratio: 2.778713e-01	ci left: 6.277681e-05	ci right 8.336340e-05	k: 198	n:2730000
Cons ci ratio: 9.821725e-02	ci left: 5.545036e-04	ci right 6.121321e-04	k: 1591	n:2730000
KS ci ratio: 1.410639e-01	ci left: 2.628345e-04	ci right 3.030732e-04	k: 771	n:2730000
WT1   2730000 perm   3482 sec   (784 perm/sec)   p_kst 2.824176e-04   p_cons 5.827839e-04   p_joint 7.252747e-05

Joint ci ratio: 2.778713e-01	ci left: 6.254769e-05	ci right 8.305916e-05	k: 198	n:2740000
Cons ci ratio: 9.812489e-02	ci left: 5.535479e-04	ci right 6.110198e-04	k: 1594	n:2740000
KS ci ratio: 1.410640e-01	ci left: 2.618752e-04	ci right 3.019671e-04	k: 771	n:2740000
WT1   2740000 perm   3506 sec   (782 perm/sec)   p_kst 2.813869e-04   p_cons 5.817518e-04   p_joint 7.226277e-05

Joint ci ratio: 2.771757e-01	ci left: 6.265858e-05	ci right 8.314600e-05	k: 199	n:2750000
Cons ci ratio: 9.794085e-02	ci left: 5.536633e-04	ci right 6.110332e-04	k: 1600	n:2750000
KS ci ratio: 1.406999e-01	ci left: 2.623262e-04	ci right 3.023748e-04	k: 775	n:2750000
WT1   2750000 perm   3529 sec   (779 perm/sec)   p_kst 2.818182e-04   p_cons 5.818182e-04   p_joint 7.236364e-05

Joint ci ratio: 2.758001e-01	ci left: 6.310596e-05	ci right 8.361949e-05	k: 201	n:2760000
Cons ci ratio: 9.775784e-02	ci left: 5.537780e-04	ci right 6.110464e-04	k: 1606	n:2760000
KS ci ratio: 1.405190e-01	ci left: 2.620749e-04	ci right 3.020293e-04	k: 777	n:2760000
WT1   2760000 perm   3553 sec   (777 perm/sec)   p_kst 2.815217e-04   p_cons 5.818841e-04   p_joint 7.282609e-05

Joint ci ratio: 2.758001e-01	ci left: 6.287814e-05	ci right 8.331762e-05	k: 201	n:2770000
Cons ci ratio: 9.754559e-02	ci left: 5.542441e-04	ci right 6.114292e-04	k: 1613	n:2770000
KS ci ratio: 1.404288e-01	ci left: 2.614771e-04	ci right 3.013127e-04	k: 778	n:2770000
WT1   2770000 perm   3576 sec   (775 perm/sec)   p_kst 2.808664e-04   p_cons 5.823105e-04   p_joint 7.256318e-05

Joint ci ratio: 2.744448e-01	ci left: 6.332177e-05	ci right 8.378684e-05	k: 203	n:2780000
Cons ci ratio: 9.748528e-02	ci left: 5.529523e-04	ci right 6.099668e-04	k: 1615	n:2780000
KS ci ratio: 1.401592e-01	ci left: 2.615778e-04	ci right 3.013458e-04	k: 781	n:2780000
WT1   2780000 perm   3599 sec   (772 perm/sec)   p_kst 2.809353e-04   p_cons 5.809353e-04   p_joint 7.302158e-05

Joint ci ratio: 2.744448e-01	ci left: 6.309480e-05	ci right 8.348653e-05	k: 203	n:2790000
Cons ci ratio: 9.727481e-02	ci left: 5.534183e-04	ci right 6.103506e-04	k: 1622	n:2790000
KS ci ratio: 1.400697e-01	ci left: 2.609861e-04	ci right 3.006367e-04	k: 782	n:2790000
WT1   2790000 perm   3623 sec   (770 perm/sec)   p_kst 2.802867e-04   p_cons 5.813620e-04   p_joint 7.275986e-05

Joint ci ratio: 2.737746e-01	ci left: 6.320207e-05	ci right 8.356999e-05	k: 204	n:2800000
Cons ci ratio: 9.703591e-02	ci left: 5.542295e-04	ci right 6.110973e-04	k: 1630	n:2800000
KS ci ratio: 1.397132e-01	ci left: 2.614326e-04	ci right 3.010415e-04	k: 786	n:2800000
WT1   2800000 perm   3647 sec   (768 perm/sec)   p_kst 2.807143e-04   p_cons 5.821429e-04   p_joint 7.285714e-05

Joint ci ratio: 2.737746e-01	ci left: 6.297715e-05	ci right 8.327259e-05	k: 204	n:2810000
Cons ci ratio: 9.688753e-02	ci left: 5.539934e-04	ci right 6.107451e-04	k: 1635	n:2810000
KS ci ratio: 1.395361e-01	ci left: 2.611891e-04	ci right 3.007068e-04	k: 788	n:2810000
WT1   2810000 perm   3671 sec   (765 perm/sec)   p_kst 2.804270e-04   p_cons 5.818505e-04   p_joint 7.259786e-05

Joint ci ratio: 2.737747e-01	ci left: 6.275382e-05	ci right 8.297730e-05	k: 204	n:2820000
Cons ci ratio: 9.671035e-02	ci left: 5.541050e-04	ci right 6.107585e-04	k: 1641	n:2820000
KS ci ratio: 1.391837e-01	ci left: 2.616319e-04	ci right 3.011083e-04	k: 792	n:2820000
WT1   2820000 perm   3695 sec   (763 perm/sec)   p_kst 2.808511e-04   p_cons 5.819149e-04   p_joint 7.234043e-05

Joint ci ratio: 2.828920e-01	ci left: 5.825891e-05	ci right 7.777079e-05	k: 191	n:2830000
Cons ci ratio: 9.656345e-02	ci left: 5.538711e-04	ci right 6.104098e-04	k: 1646	n:2830000
KS ci ratio: 1.391838e-01	ci left: 2.607074e-04	ci right 3.000443e-04	k: 792	n:2830000
WT1   2830000 perm   3719 sec   (761 perm/sec)   p_kst 2.798587e-04   p_cons 5.816254e-04   p_joint 6.749117e-05

Joint ci ratio: 2.828920e-01	ci left: 5.805377e-05	ci right 7.749695e-05	k: 191	n:2840000
Cons ci ratio: 9.632975e-02	ci left: 5.546698e-04	ci right 6.111453e-04	k: 1654	n:2840000
KS ci ratio: 1.390961e-01	ci left: 2.601292e-04	ci right 2.993522e-04	k: 793	n:2840000
WT1   2840000 perm   3743 sec   (759 perm/sec)   p_kst 2.792254e-04   p_cons 5.823944e-04   p_joint 6.725352e-05

Joint ci ratio: 2.828921e-01	ci left: 5.785007e-05	ci right 7.722503e-05	k: 191	n:2850000
Cons ci ratio: 9.612665e-02	ci left: 5.551207e-04	ci right 6.115161e-04	k: 1661	n:2850000
KS ci ratio: 1.390962e-01	ci left: 2.592165e-04	ci right 2.983019e-04	k: 793	n:2850000
WT1   2850000 perm   3767 sec   (757 perm/sec)   p_kst 2.782456e-04   p_cons 5.828070e-04   p_joint 6.701754e-05

Joint ci ratio: 2.828921e-01	ci left: 5.764780e-05	ci right 7.695501e-05	k: 191	n:2860000
Cons ci ratio: 9.601121e-02	ci left: 5.545447e-04	ci right 6.108102e-04	k: 1665	n:2860000
KS ci ratio: 1.388342e-01	ci left: 2.593226e-04	ci right 2.983442e-04	k: 796	n:2860000
WT1   2860000 perm   3791 sec   (754 perm/sec)   p_kst 2.783217e-04   p_cons 5.821678e-04   p_joint 6.678322e-05

Joint ci ratio: 2.821582e-01	ci left: 5.777068e-05	ci right 7.705993e-05	k: 192	n:2870000
Cons ci ratio: 9.578149e-02	ci left: 5.553331e-04	ci right 6.115362e-04	k: 1673	n:2870000
KS ci ratio: 1.384006e-01	ci left: 2.601008e-04	ci right 2.991073e-04	k: 801	n:2870000
WT1   2870000 perm   3816 sec   (752 perm/sec)   p_kst 2.790941e-04   p_cons 5.829268e-04   p_joint 6.689895e-05

Joint ci ratio: 2.821583e-01	ci left: 5.757009e-05	ci right 7.679236e-05	k: 192	n:2880000
Cons ci ratio: 9.555340e-02	ci left: 5.561162e-04	ci right 6.122570e-04	k: 1681	n:2880000
KS ci ratio: 1.383145e-01	ci left: 2.595329e-04	ci right 2.984279e-04	k: 802	n:2880000
WT1   2880000 perm   3840 sec   (750 perm/sec)   p_kst 2.784722e-04   p_cons 5.836806e-04   p_joint 6.666667e-05

Joint ci ratio: 2.814301e-01	ci left: 5.769246e-05	ci right 7.689705e-05	k: 193	n:2890000
Cons ci ratio: 9.538342e-02	ci left: 5.562185e-04	ci right 6.122641e-04	k: 1687	n:2890000
KS ci ratio: 1.380568e-01	ci left: 2.596370e-04	ci right 2.984692e-04	k: 805	n:2890000
WT1   2890000 perm   3865 sec   (748 perm/sec)   p_kst 2.785467e-04   p_cons 5.837370e-04   p_joint 6.678201e-05

Joint ci ratio: 2.807075e-01	ci left: 5.781404e-05	ci right 7.700096e-05	k: 194	n:2900000
Cons ci ratio: 9.521435e-02	ci left: 5.563201e-04	ci right 6.122711e-04	k: 1693	n:2900000
KS ci ratio: 1.378859e-01	ci left: 2.594076e-04	ci right 2.981535e-04	k: 807	n:2900000
WT1   2900000 perm   3889 sec   (746 perm/sec)   p_kst 2.782759e-04   p_cons 5.837931e-04   p_joint 6.689655e-05

Joint ci ratio: 2.799905e-01	ci left: 5.793486e-05	ci right 7.710409e-05	k: 195	n:2910000
Cons ci ratio: 9.490663e-02	ci left: 5.580986e-04	ci right 6.140370e-04	k: 1704	n:2910000
KS ci ratio: 1.376306e-01	ci left: 2.595115e-04	ci right 2.981953e-04	k: 810	n:2910000
WT1   2910000 perm   3914 sec   (743 perm/sec)   p_kst 2.783505e-04   p_cons 5.855670e-04   p_joint 6.701031e-05

Joint ci ratio: 2.799906e-01	ci left: 5.773645e-05	ci right 7.684003e-05	k: 195	n:2920000
Cons ci ratio: 9.468472e-02	ci left: 5.588621e-04	ci right 6.147388e-04	k: 1712	n:2920000
KS ci ratio: 1.376307e-01	ci left: 2.586228e-04	ci right 2.971741e-04	k: 810	n:2920000
WT1   2920000 perm   3938 sec   (741 perm/sec)   p_kst 2.773973e-04   p_cons 5.863014e-04   p_joint 6.678082e-05

Joint ci ratio: 2.799906e-01	ci left: 5.753940e-05	ci right 7.657778e-05	k: 195	n:2930000
Cons ci ratio: 9.465717e-02	ci left: 5.572879e-04	ci right 6.129901e-04	k: 1713	n:2930000
KS ci ratio: 1.374613e-01	ci left: 2.583992e-04	ci right 2.968659e-04	k: 812	n:2930000
WT1   2930000 perm   3963 sec   (739 perm/sec)   p_kst 2.771331e-04   p_cons 5.846416e-04   p_joint 6.655290e-05

Joint ci ratio: 2.778720e-01	ci left: 5.829273e-05	ci right 7.740891e-05	k: 198	n:2940000
Cons ci ratio: 9.440958e-02	ci left: 5.583812e-04	ci right 6.140386e-04	k: 1722	n:2940000
KS ci ratio: 1.372084e-01	ci left: 2.585057e-04	ci right 2.969116e-04	k: 815	n:2940000
WT1   2940000 perm   3988 sec   (737 perm/sec)   p_kst 2.772109e-04   p_cons 5.857143e-04   p_joint 6.734694e-05

Joint ci ratio: 2.771764e-01	ci left: 5.841052e-05	ci right 7.750901e-05	k: 199	n:2950000
Cons ci ratio: 9.427291e-02	ci left: 5.581433e-04	ci right 6.136921e-04	k: 1727	n:2950000
KS ci ratio: 1.368733e-01	ci left: 2.589388e-04	ci right 2.973075e-04	k: 819	n:2950000
WT1   2950000 perm   4012 sec   (735 perm/sec)   p_kst 2.776271e-04   p_cons 5.854237e-04   p_joint 6.745763e-05

Joint ci ratio: 2.751206e-01	ci left: 5.915654e-05	ci right 7.833067e-05	k: 202	n:2960000
Cons ci ratio: 9.408252e-02	ci left: 5.585669e-04	ci right 6.140393e-04	k: 1734	n:2960000
KS ci ratio: 1.363752e-01	ci left: 2.600218e-04	ci right 2.983994e-04	k: 825	n:2960000
WT1   2960000 perm   4037 sec   (733 perm/sec)   p_kst 2.787162e-04   p_cons 5.858108e-04   p_joint 6.824324e-05

Joint ci ratio: 2.744454e-01	ci left: 5.927086e-05	ci right 7.842677e-05	k: 203	n:2970000
Cons ci ratio: 9.392026e-02	ci left: 5.586589e-04	ci right 6.140395e-04	k: 1740	n:2970000
KS ci ratio: 1.362928e-01	ci left: 2.594715e-04	ci right 2.977429e-04	k: 826	n:2970000
WT1   2970000 perm   4063 sec   (731 perm/sec)   p_kst 2.781145e-04   p_cons 5.858586e-04   p_joint 6.835017e-05

Joint ci ratio: 2.744455e-01	ci left: 5.907196e-05	ci right 7.816359e-05	k: 203	n:2980000
Cons ci ratio: 9.381258e-02	ci left: 5.580950e-04	ci right 6.133528e-04	k: 1744	n:2980000
KS ci ratio: 1.361283e-01	ci left: 2.592490e-04	ci right 2.974377e-04	k: 828	n:2980000
WT1   2980000 perm   4088 sec   (729 perm/sec)   p_kst 2.778523e-04   p_cons 5.852349e-04   p_joint 6.812081e-05

Joint ci ratio: 2.744455e-01	ci left: 5.887440e-05	ci right 7.790218e-05	k: 203	n:2990000
Cons ci ratio: 9.381267e-02	ci left: 5.562284e-04	ci right 6.113015e-04	k: 1744	n:2990000
KS ci ratio: 1.358826e-01	ci left: 2.593512e-04	ci right 2.974804e-04	k: 831	n:2990000
WT1   2990000 perm   4113 sec   (727 perm/sec)   p_kst 2.779264e-04   p_cons 5.832776e-04   p_joint 6.789298e-05

Joint ci ratio: 2.744455e-01	ci left: 5.867815e-05	ci right 7.764250e-05	k: 203	n:3000000
Cons ci ratio: 9.365180e-02	ci left: 5.563274e-04	ci right 6.113106e-04	k: 1750	n:3000000
KS ci ratio: 1.358011e-01	ci left: 2.588087e-04	ci right 2.968335e-04	k: 832	n:3000000
WT1   3000000 perm   4139 sec   (725 perm/sec)   p_kst 2.773333e-04   p_cons 5.833333e-04   p_joint 6.766667e-05

Joint ci ratio: 2.744456e-01	ci left: 5.848320e-05	ci right 7.738456e-05	k: 203	n:3010000
Cons ci ratio: 9.351839e-02	ci left: 5.561014e-04	ci right 6.109797e-04	k: 1755	n:3010000
KS ci ratio: 1.357197e-01	ci left: 2.582698e-04	ci right 2.961908e-04	k: 833	n:3010000
WT1   3010000 perm   4164 sec   (723 perm/sec)   p_kst 2.767442e-04   p_cons 5.830565e-04   p_joint 6.744186e-05

Joint ci ratio: 2.744456e-01	ci left: 5.828955e-05	ci right 7.712832e-05	k: 203	n:3020000
Cons ci ratio: 9.325318e-02	ci left: 5.574940e-04	ci right 6.123451e-04	k: 1765	n:3020000
KS ci ratio: 1.355572e-01	ci left: 2.580544e-04	ci right 2.958948e-04	k: 835	n:3020000
WT1   3020000 perm   4190 sec   (721 perm/sec)   p_kst 2.764901e-04   p_cons 5.844371e-04   p_joint 6.721854e-05

Joint ci ratio: 2.744456e-01	ci left: 5.809718e-05	ci right 7.687377e-05	k: 203	n:3030000
Cons ci ratio: 9.312146e-02	ci left: 5.572658e-04	ci right 6.120128e-04	k: 1770	n:3030000
KS ci ratio: 1.352341e-01	ci left: 2.584781e-04	ci right 2.962830e-04	k: 839	n:3030000
WT1   3030000 perm   4215 sec   (719 perm/sec)   p_kst 2.768977e-04   p_cons 5.841584e-04   p_joint 6.699670e-05

Joint ci ratio: 2.737754e-01	ci left: 5.821241e-05	ci right 7.697239e-05	k: 204	n:3040000
Cons ci ratio: 9.304273e-02	ci left: 5.563965e-04	ci right 6.110094e-04	k: 1773	n:3040000
KS ci ratio: 1.349932e-01	ci left: 2.585814e-04	ci right 2.963286e-04	k: 842	n:3040000
WT1   3040000 perm   4241 sec   (717 perm/sec)   p_kst 2.769737e-04   p_cons 5.832237e-04   p_joint 6.710526e-05

Joint ci ratio: 2.731101e-01	ci left: 5.832694e-05	ci right 7.707032e-05	k: 205	n:3050000
Cons ci ratio: 9.288578e-02	ci left: 5.564937e-04	ci right 6.110191e-04	k: 1779	n:3050000
KS ci ratio: 1.347537e-01	ci left: 2.586840e-04	ci right 2.963738e-04	k: 845	n:3050000
WT1   3050000 perm   4267 sec   (715 perm/sec)   p_kst 2.770492e-04   p_cons 5.832787e-04   p_joint 6.721311e-05

Joint ci ratio: 2.724496e-01	ci left: 5.844078e-05	ci right 7.716755e-05	k: 206	n:3060000
Cons ci ratio: 9.280765e-02	ci left: 5.556328e-04	ci right 6.100254e-04	k: 1782	n:3060000
KS ci ratio: 1.343572e-01	ci left: 2.594176e-04	ci right 2.970942e-04	k: 850	n:3060000
WT1   3060000 perm   4293 sec   (713 perm/sec)   p_kst 2.777778e-04   p_cons 5.823529e-04   p_joint 6.732026e-05

Joint ci ratio: 2.724496e-01	ci left: 5.825042e-05	ci right 7.691619e-05	k: 206	n:3070000
Cons ci ratio: 9.267780e-02	ci left: 5.554138e-04	ci right 6.097048e-04	k: 1787	n:3070000
KS ci ratio: 1.342783e-01	ci left: 2.588874e-04	ci right 2.964632e-04	k: 851	n:3070000
WT1   3070000 perm   4318 sec   (711 perm/sec)   p_kst 2.771987e-04   p_cons 5.820847e-04   p_joint 6.710098e-05

Joint ci ratio: 2.717939e-01	ci left: 5.836382e-05	ci right 7.701323e-05	k: 207	n:3080000
Cons ci ratio: 9.254850e-02	ci left: 5.551962e-04	ci right 6.093862e-04	k: 1792	n:3080000
KS ci ratio: 1.340425e-01	ci left: 2.589882e-04	ci right 2.965073e-04	k: 854	n:3080000
WT1   3080000 perm   4344 sec   (709 perm/sec)   p_kst 2.772727e-04   p_cons 5.818182e-04   p_joint 6.720779e-05

Joint ci ratio: 2.711429e-01	ci left: 5.847654e-05	ci right 7.710959e-05	k: 208	n:3090000
Cons ci ratio: 9.239404e-02	ci left: 5.552963e-04	ci right 6.094007e-04	k: 1798	n:3090000
KS ci ratio: 1.338080e-01	ci left: 2.590884e-04	ci right 2.965511e-04	k: 857	n:3090000
WT1   3090000 perm   4370 sec   (707 perm/sec)   p_kst 2.773463e-04   p_cons 5.818770e-04   p_joint 6.731392e-05

Joint ci ratio: 2.711429e-01	ci left: 5.828790e-05	ci right 7.686085e-05	k: 208	n:3100000
Cons ci ratio: 9.224035e-02	ci left: 5.553959e-04	ci right 6.094151e-04	k: 1804	n:3100000
KS ci ratio: 1.334971e-01	ci left: 2.594998e-04	ci right 2.969279e-04	k: 861	n:3100000
WT1   3100000 perm   4396 sec   (705 perm/sec)   p_kst 2.777419e-04   p_cons 5.819355e-04   p_joint 6.709677e-05

Joint ci ratio: 2.711429e-01	ci left: 5.810048e-05	ci right 7.661372e-05	k: 208	n:3110000
Cons ci ratio: 9.216383e-02	ci left: 5.545524e-04	ci right 6.084424e-04	k: 1807	n:3110000
KS ci ratio: 1.334198e-01	ci left: 2.589762e-04	ci right 2.963055e-04	k: 862	n:3110000
WT1   3110000 perm   4422 sec   (703 perm/sec)   p_kst 2.771704e-04   p_cons 5.810289e-04   p_joint 6.688103e-05

Joint ci ratio: 2.711429e-01	ci left: 5.791426e-05	ci right 7.636816e-05	k: 208	n:3120000
Cons ci ratio: 9.198591e-02	ci left: 5.549669e-04	ci right 6.087875e-04	k: 1814	n:3120000
KS ci ratio: 1.333426e-01	ci left: 2.584559e-04	ci right 2.956870e-04	k: 863	n:3120000
WT1   3120000 perm   4448 sec   (701 perm/sec)   p_kst 2.766026e-04   p_cons 5.814103e-04   p_joint 6.666667e-05

Joint ci ratio: 2.704966e-01	ci left: 5.802703e-05	ci right 7.646530e-05	k: 209	n:3130000
Cons ci ratio: 9.178383e-02	ci left: 5.556911e-04	ci right 6.094571e-04	k: 1822	n:3130000
KS ci ratio: 1.331886e-01	ci left: 2.582479e-04	ci right 2.954026e-04	k: 865	n:3130000
WT1   3130000 perm   4474 sec   (700 perm/sec)   p_kst 2.763578e-04   p_cons 5.821086e-04   p_joint 6.677316e-05

Joint ci ratio: 2.704966e-01	ci left: 5.784223e-05	ci right 7.622178e-05	k: 209	n:3140000
Cons ci ratio: 9.165823e-02	ci left: 5.554772e-04	ci right 6.091451e-04	k: 1827	n:3140000
KS ci ratio: 1.326534e-01	ci left: 2.595806e-04	ci right 2.967652e-04	k: 872	n:3140000
WT1   3140000 perm   4499 sec   (698 perm/sec)   p_kst 2.777070e-04   p_cons 5.818471e-04   p_joint 6.656051e-05

Joint ci ratio: 2.704966e-01	ci left: 5.765860e-05	ci right 7.597981e-05	k: 209	n:3150000
Cons ci ratio: 9.155813e-02	ci left: 5.549545e-04	ci right 6.085102e-04	k: 1831	n:3150000
KS ci ratio: 1.324261e-01	ci left: 2.596773e-04	ci right 2.968070e-04	k: 875	n:3150000
WT1   3150000 perm   4525 sec   (696 perm/sec)   p_kst 2.777778e-04   p_cons 5.812698e-04   p_joint 6.634921e-05

Joint ci ratio: 2.704967e-01	ci left: 5.747614e-05	ci right 7.573937e-05	k: 209	n:3160000
Cons ci ratio: 9.143346e-02	ci left: 5.547444e-04	ci right 6.082030e-04	k: 1836	n:3160000
KS ci ratio: 1.319748e-01	ci left: 2.606915e-04	ci right 2.978292e-04	k: 881	n:3160000
WT1   3160000 perm   4552 sec   (694 perm/sec)   p_kst 2.787975e-04   p_cons 5.810127e-04   p_joint 6.613924e-05

Joint ci ratio: 2.704967e-01	ci left: 5.729482e-05	ci right 7.550044e-05	k: 209	n:3170000
Cons ci ratio: 9.130929e-02	ci left: 5.545356e-04	ci right 6.078977e-04	k: 1841	n:3170000
KS ci ratio: 1.319749e-01	ci left: 2.598692e-04	ci right 2.968897e-04	k: 881	n:3170000
WT1   3170000 perm   4578 sec   (692 perm/sec)   p_kst 2.779180e-04   p_cons 5.807571e-04   p_joint 6.593060e-05

Joint ci ratio: 2.704967e-01	ci left: 5.711465e-05	ci right 7.526302e-05	k: 209	n:3180000
Cons ci ratio: 9.111162e-02	ci left: 5.552502e-04	ci right 6.085592e-04	k: 1849	n:3180000
KS ci ratio: 1.316766e-01	ci left: 2.602683e-04	ci right 2.972554e-04	k: 885	n:3180000
WT1   3180000 perm   4605 sec   (691 perm/sec)   p_kst 2.783019e-04   p_cons 5.814465e-04   p_joint 6.572327e-05

Joint ci ratio: 2.704968e-01	ci left: 5.693561e-05	ci right 7.502709e-05	k: 209	n:3190000
Cons ci ratio: 9.098876e-02	ci left: 5.550413e-04	ci right 6.082545e-04	k: 1854	n:3190000
KS ci ratio: 1.316024e-01	ci left: 2.597556e-04	ci right 2.966474e-04	k: 886	n:3190000
WT1   3190000 perm   4631 sec   (689 perm/sec)   p_kst 2.777429e-04   p_cons 5.811912e-04   p_joint 6.551724e-05

Joint ci ratio: 2.698550e-01	ci left: 5.704902e-05	ci right 7.512624e-05	k: 210	n:3200000
Cons ci ratio: 9.086639e-02	ci left: 5.548337e-04	ci right 6.079518e-04	k: 1859	n:3200000
KS ci ratio: 1.313804e-01	ci left: 2.598505e-04	ci right 2.966887e-04	k: 889	n:3200000
WT1   3200000 perm   4658 sec   (687 perm/sec)   p_kst 2.778125e-04   p_cons 5.809375e-04   p_joint 6.562500e-05

Joint ci ratio: 2.692178e-01	ci left: 5.716177e-05	ci right 7.522473e-05	k: 211	n:3210000
Cons ci ratio: 9.067158e-02	ci left: 5.555409e-04	ci right 6.086066e-04	k: 1867	n:3210000
KS ci ratio: 1.312331e-01	ci left: 2.596436e-04	ci right 2.964079e-04	k: 891	n:3210000
WT1   3210000 perm   4685 sec   (685 perm/sec)   p_kst 2.775701e-04   p_cons 5.816199e-04   p_joint 6.573209e-05

Joint ci ratio: 2.692178e-01	ci left: 5.698425e-05	ci right 7.499112e-05	k: 211	n:3220000
Cons ci ratio: 9.042979e-02	ci left: 5.568509e-04	ci right 6.098924e-04	k: 1877	n:3220000
KS ci ratio: 1.311596e-01	ci left: 2.591376e-04	ci right 2.958081e-04	k: 892	n:3220000
WT1   3220000 perm   4711 sec   (684 perm/sec)   p_kst 2.770186e-04   p_cons 5.829193e-04   p_joint 6.552795e-05

Joint ci ratio: 2.692178e-01	ci left: 5.680783e-05	ci right 7.475895e-05	k: 211	n:3230000
Cons ci ratio: 9.028568e-02	ci left: 5.569425e-04	ci right 6.099037e-04	k: 1883	n:3230000
KS ci ratio: 1.310130e-01	ci left: 2.589342e-04	ci right 2.955318e-04	k: 894	n:3230000
WT1   3230000 perm   4738 sec   (682 perm/sec)   p_kst 2.767802e-04   p_cons 5.829721e-04   p_joint 6.532508e-05

Joint ci ratio: 2.692179e-01	ci left: 5.663250e-05	ci right 7.452821e-05	k: 211	n:3240000
Cons ci ratio: 9.019001e-02	ci left: 5.564303e-04	ci right 6.092837e-04	k: 1887	n:3240000
KS ci ratio: 1.307939e-01	ci left: 2.590307e-04	ci right 2.955759e-04	k: 897	n:3240000
WT1   3240000 perm   4765 sec   (680 perm/sec)   p_kst 2.768519e-04   p_cons 5.824074e-04   p_joint 6.512346e-05

Joint ci ratio: 2.685851e-01	ci left: 5.674519e-05	ci right 7.462728e-05	k: 212	n:3250000
Cons ci ratio: 9.002326e-02	ci left: 5.568235e-04	ci right 6.096114e-04	k: 1894	n:3250000
KS ci ratio: 1.305760e-01	ci left: 2.591265e-04	ci right 2.956197e-04	k: 900	n:3250000
WT1   3250000 perm   4792 sec   (678 perm/sec)   p_kst 2.769231e-04   p_cons 5.827692e-04   p_joint 6.523077e-05

Joint ci ratio: 2.685852e-01	ci left: 5.657113e-05	ci right 7.439836e-05	k: 212	n:3260000
Cons ci ratio: 8.990474e-02	ci left: 5.566147e-04	ci right 6.093096e-04	k: 1899	n:3260000
KS ci ratio: 1.305036e-01	ci left: 2.586284e-04	ci right 2.950296e-04	k: 901	n:3260000
WT1   3260000 perm   4819 sec   (677 perm/sec)   p_kst 2.763804e-04   p_cons 5.825153e-04   p_joint 6.503067e-05

Joint ci ratio: 2.679569e-01	ci left: 5.668337e-05	ci right 7.449717e-05	k: 213	n:3270000
Cons ci ratio: 8.981028e-02	ci left: 5.561083e-04	ci right 6.086970e-04	k: 1903	n:3270000
KS ci ratio: 1.302152e-01	ci left: 2.590208e-04	ci right 2.953905e-04	k: 905	n:3270000
WT1   3270000 perm   4846 sec   (675 perm/sec)   p_kst 2.767584e-04   p_cons 5.819572e-04   p_joint 6.513761e-05

Joint ci ratio: 2.667134e-01	ci left: 5.707945e-05	ci right 7.492057e-05	k: 215	n:3280000
Cons ci ratio: 8.973965e-02	ci left: 5.553069e-04	ci right 6.077764e-04	k: 1906	n:3280000
KS ci ratio: 1.300717e-01	ci left: 2.588210e-04	ci right 2.951195e-04	k: 907	n:3280000
WT1   3280000 perm   4873 sec   (673 perm/sec)   p_kst 2.765244e-04   p_cons 5.810976e-04   p_joint 6.554878e-05

Joint ci ratio: 2.667134e-01	ci left: 5.690596e-05	ci right 7.469285e-05	k: 215	n:3290000
Cons ci ratio: 8.955198e-02	ci left: 5.559961e-04	ci right 6.084152e-04	k: 1914	n:3290000
KS ci ratio: 1.297862e-01	ci left: 2.592106e-04	ci right 2.954778e-04	k: 911	n:3290000
WT1   3290000 perm   4900 sec   (671 perm/sec)   p_kst 2.768997e-04   p_cons 5.817629e-04   p_joint 6.534954e-05

Joint ci ratio: 2.667134e-01	ci left: 5.673351e-05	ci right 7.446651e-05	k: 215	n:3300000
Cons ci ratio: 8.941201e-02	ci left: 5.560888e-04	ci right 6.084303e-04	k: 1920	n:3300000
KS ci ratio: 1.295024e-01	ci left: 2.595980e-04	ci right 2.958338e-04	k: 915	n:3300000
WT1   3300000 perm   4928 sec   (670 perm/sec)   p_kst 2.772727e-04   p_cons 5.818182e-04   p_joint 6.515152e-05

Joint ci ratio: 2.667135e-01	ci left: 5.656211e-05	ci right 7.424153e-05	k: 215	n:3310000
Cons ci ratio: 8.927270e-02	ci left: 5.561810e-04	ci right 6.084454e-04	k: 1926	n:3310000
KS ci ratio: 1.295025e-01	ci left: 2.588137e-04	ci right 2.949401e-04	k: 915	n:3310000
WT1   3310000 perm   4956 sec   (668 perm/sec)   p_kst 2.764350e-04   p_cons 5.818731e-04   p_joint 6.495468e-05

Joint ci ratio: 2.660982e-01	ci left: 5.667284e-05	ci right 7.433919e-05	k: 216	n:3320000
Cons ci ratio: 8.920333e-02	ci left: 5.553892e-04	ci right 6.075365e-04	k: 1929	n:3320000
KS ci ratio: 1.293614e-01	ci left: 2.586170e-04	ci right 2.946736e-04	k: 917	n:3320000
WT1   3320000 perm   4984 sec   (666 perm/sec)   p_kst 2.762048e-04   p_cons 5.810241e-04   p_joint 6.506024e-05

Joint ci ratio: 2.660982e-01	ci left: 5.650265e-05	ci right 7.411595e-05	k: 216	n:3330000
Cons ci ratio: 8.897307e-02	ci left: 5.566574e-04	ci right 6.087819e-04	k: 1939	n:3330000
KS ci ratio: 1.292207e-01	ci left: 2.584216e-04	ci right 2.944087e-04	k: 919	n:3330000
WT1   3330000 perm   5012 sec   (664 perm/sec)   p_kst 2.759760e-04   p_cons 5.822823e-04   p_joint 6.486486e-05

Joint ci ratio: 2.660983e-01	ci left: 5.633348e-05	ci right 7.389404e-05	k: 216	n:3340000
Cons ci ratio: 8.879016e-02	ci left: 5.573328e-04	ci right 6.094076e-04	k: 1947	n:3340000
KS ci ratio: 1.289407e-01	ci left: 2.588068e-04	ci right 2.947635e-04	k: 923	n:3340000
WT1   3340000 perm   5040 sec   (663 perm/sec)   p_kst 2.763473e-04   p_cons 5.829341e-04   p_joint 6.467066e-05

Joint ci ratio: 2.660983e-01	ci left: 5.616532e-05	ci right 7.367347e-05	k: 216	n:3350000
Cons ci ratio: 8.860837e-02	ci left: 5.580042e-04	ci right 6.100295e-04	k: 1955	n:3350000
KS ci ratio: 1.288014e-01	ci left: 2.586120e-04	ci right 2.944999e-04	k: 925	n:3350000
WT1   3350000 perm   5068 sec   (661 perm/sec)   p_kst 2.761194e-04   p_cons 5.835821e-04   p_joint 6.447761e-05

Joint ci ratio: 2.642777e-01	ci left: 5.683167e-05	ci right 7.440627e-05	k: 219	n:3360000
Cons ci ratio: 8.845023e-02	ci left: 5.583807e-04	ci right 6.103434e-04	k: 1962	n:3360000
KS ci ratio: 1.285241e-01	ci left: 2.589945e-04	ci right 2.948521e-04	k: 929	n:3360000
WT1   3360000 perm   5096 sec   (659 perm/sec)   p_kst 2.764881e-04   p_cons 5.839286e-04   p_joint 6.517857e-05

Joint ci ratio: 2.642777e-01	ci left: 5.666303e-05	ci right 7.418548e-05	k: 219	n:3370000
Cons ci ratio: 8.829293e-02	ci left: 5.587550e-04	ci right 6.106553e-04	k: 1969	n:3370000
KS ci ratio: 1.283173e-01	ci left: 2.590876e-04	ci right 2.948960e-04	k: 932	n:3370000
WT1   3370000 perm   5124 sec   (658 perm/sec)   p_kst 2.765579e-04   p_cons 5.842730e-04   p_joint 6.498516e-05

Joint ci ratio: 2.642777e-01	ci left: 5.649538e-05	ci right 7.396600e-05	k: 219	n:3380000
Cons ci ratio: 8.811417e-02	ci left: 5.594166e-04	ci right 6.112677e-04	k: 1977	n:3380000
KS ci ratio: 1.281800e-01	ci left: 2.588938e-04	ci right 2.946342e-04	k: 934	n:3380000
WT1   3380000 perm   5153 sec   (656 perm/sec)   p_kst 2.763314e-04   p_cons 5.849112e-04   p_joint 6.479290e-05

Joint ci ratio: 2.630845e-01	ci left: 5.687971e-05	ci right 7.437669e-05	k: 221	n:3390000
Cons ci ratio: 8.800302e-02	ci left: 5.592088e-04	ci right 6.109720e-04	k: 1982	n:3390000
KS ci ratio: 1.278386e-01	ci left: 2.595578e-04	ci right 2.952872e-04	k: 939	n:3390000
WT1   3390000 perm   5181 sec   (654 perm/sec)   p_kst 2.769912e-04   p_cons 5.846608e-04   p_joint 6.519174e-05

Joint ci ratio: 2.630845e-01	ci left: 5.671242e-05	ci right 7.415793e-05	k: 221	n:3400000
Cons ci ratio: 8.784809e-02	ci left: 5.595777e-04	ci right 6.112791e-04	k: 1989	n:3400000
KS ci ratio: 1.278386e-01	ci left: 2.587944e-04	ci right 2.944187e-04	k: 939	n:3400000
WT1   3400000 perm   5209 sec   (653 perm/sec)   p_kst 2.761765e-04   p_cons 5.850000e-04   p_joint 6.500000e-05

Joint ci ratio: 2.624940e-01	ci left: 5.682004e-05	ci right 7.425299e-05	k: 222	n:3410000
Cons ci ratio: 8.773795e-02	ci left: 5.593707e-04	ci right 6.109849e-04	k: 1994	n:3410000
KS ci ratio: 1.276351e-01	ci left: 2.588871e-04	ci right 2.944632e-04	k: 942	n:3410000
WT1   3410000 perm   5237 sec   (651 perm/sec)   p_kst 2.762463e-04   p_cons 5.847507e-04   p_joint 6.510264e-05

Joint ci ratio: 2.624940e-01	ci left: 5.665390e-05	ci right 7.403587e-05	k: 222	n:3420000
Cons ci ratio: 8.762822e-02	ci left: 5.591651e-04	ci right 6.106924e-04	k: 1999	n:3420000
KS ci ratio: 1.274325e-01	ci left: 2.589793e-04	ci right 2.945074e-04	k: 945	n:3420000
WT1   3420000 perm   5265 sec   (650 perm/sec)   p_kst 2.763158e-04   p_cons 5.845029e-04   p_joint 6.491228e-05

Joint ci ratio: 2.624940e-01	ci left: 5.648873e-05	ci right 7.382003e-05	k: 222	n:3430000
Cons ci ratio: 8.747526e-02	ci left: 5.595310e-04	ci right 6.109975e-04	k: 2006	n:3430000
KS ci ratio: 1.272981e-01	ci left: 2.587888e-04	ci right 2.942504e-04	k: 947	n:3430000
WT1   3430000 perm   5294 sec   (648 perm/sec)   p_kst 2.760933e-04   p_cons 5.848397e-04   p_joint 6.472303e-05

Joint ci ratio: 2.613247e-01	ci left: 5.686775e-05	ci right 7.422491e-05	k: 224	n:3440000
Cons ci ratio: 8.732309e-02	ci left: 5.598949e-04	ci right 6.113007e-04	k: 2013	n:3440000
KS ci ratio: 1.270971e-01	ci left: 2.588808e-04	ci right 2.942948e-04	k: 950	n:3440000
WT1   3440000 perm   5323 sec   (646 perm/sec)   p_kst 2.761628e-04   p_cons 5.851744e-04   p_joint 6.511628e-05

Joint ci ratio: 2.613248e-01	ci left: 5.670291e-05	ci right 7.400977e-05	k: 224	n:3450000
Cons ci ratio: 8.723653e-02	ci left: 5.594061e-04	ci right 6.107135e-04	k: 2017	n:3450000
KS ci ratio: 1.270972e-01	ci left: 2.581305e-04	ci right 2.934418e-04	k: 950	n:3450000
WT1   3450000 perm   5352 sec   (645 perm/sec)   p_kst 2.753623e-04   p_cons 5.846377e-04   p_joint 6.492754e-05

Joint ci ratio: 2.613248e-01	ci left: 5.653903e-05	ci right 7.379587e-05	k: 224	n:3460000
Cons ci ratio: 8.708560e-02	ci left: 5.597683e-04	ci right 6.110156e-04	k: 2024	n:3460000
KS ci ratio: 1.269637e-01	ci left: 2.579441e-04	ci right 2.931901e-04	k: 952	n:3460000
WT1   3460000 perm   5381 sec   (643 perm/sec)   p_kst 2.751445e-04   p_cons 5.849711e-04   p_joint 6.473988e-05

Joint ci ratio: 2.607460e-01	ci left: 5.664542e-05	ci right 7.389020e-05	k: 225	n:3470000
Cons ci ratio: 8.697830e-02	ci left: 5.595647e-04	ci right 6.107271e-04	k: 2029	n:3470000
KS ci ratio: 1.264999e-01	ci left: 2.591541e-04	ci right 2.944264e-04	k: 959	n:3470000
WT1   3470000 perm   5410 sec   (641 perm/sec)   p_kst 2.763689e-04   p_cons 5.847262e-04   p_joint 6.484150e-05

Joint ci ratio: 2.595998e-01	ci left: 5.701989e-05	ci right 7.428997e-05	k: 227	n:3480000
Cons ci ratio: 8.687139e-02	ci left: 5.593623e-04	ci right 6.104401e-04	k: 2034	n:3480000
KS ci ratio: 1.261717e-01	ci left: 2.598008e-04	ci right 2.950625e-04	k: 964	n:3480000
WT1   3480000 perm   5438 sec   (640 perm/sec)   p_kst 2.770115e-04   p_cons 5.844828e-04   p_joint 6.522989e-05

Joint ci ratio: 2.584686e-01	ci left: 5.739237e-05	ci right 7.468730e-05	k: 229	n:3490000
Cons ci ratio: 8.674361e-02	ci left: 5.594415e-04	ci right 6.104475e-04	k: 2040	n:3490000
KS ci ratio: 1.258461e-01	ci left: 2.604439e-04	ci right 2.956948e-04	k: 969	n:3490000
WT1   3490000 perm   5467 sec   (638 perm/sec)   p_kst 2.776504e-04   p_cons 5.845272e-04   p_joint 6.561605e-05

Joint ci ratio: 2.584686e-01	ci left: 5.722839e-05	ci right 7.447391e-05	k: 229	n:3500000
Cons ci ratio: 8.661638e-02	ci left: 5.595202e-04	ci right 6.104548e-04	k: 2046	n:3500000
KS ci ratio: 1.256519e-01	ci left: 2.605299e-04	ci right 2.957341e-04	k: 972	n:3500000
WT1   3500000 perm   5496 sec   (637 perm/sec)   p_kst 2.777143e-04   p_cons 5.845714e-04   p_joint 6.542857e-05

Joint ci ratio: 2.584686e-01	ci left: 5.706535e-05	ci right 7.426173e-05	k: 229	n:3510000
Cons ci ratio: 8.648972e-02	ci left: 5.595985e-04	ci right 6.104620e-04	k: 2052	n:3510000
KS ci ratio: 1.255875e-01	ci left: 2.600636e-04	ci right 2.951854e-04	k: 973	n:3510000
WT1   3510000 perm   5525 sec   (635 perm/sec)   p_kst 2.772080e-04   p_cons 5.846154e-04   p_joint 6.524217e-05

Joint ci ratio: 2.584687e-01	ci left: 5.690323e-05	ci right 7.405076e-05	k: 229	n:3520000
Cons ci ratio: 8.636361e-02	ci left: 5.596765e-04	ci right 6.104691e-04	k: 2058	n:3520000
KS ci ratio: 1.254587e-01	ci left: 2.598751e-04	ci right 2.949328e-04	k: 975	n:3520000
WT1   3520000 perm   5554 sec   (634 perm/sec)   p_kst 2.769886e-04   p_cons 5.846591e-04   p_joint 6.505682e-05

Joint ci ratio: 2.584687e-01	ci left: 5.674203e-05	ci right 7.384099e-05	k: 229	n:3530000
Cons ci ratio: 8.630079e-02	ci left: 5.589225e-04	ci right 6.096080e-04	k: 2061	n:3530000
KS ci ratio: 1.254588e-01	ci left: 2.591389e-04	ci right 2.940973e-04	k: 975	n:3530000
WT1   3530000 perm   5584 sec   (632 perm/sec)   p_kst 2.762040e-04   p_cons 5.838527e-04   p_joint 6.487252e-05

Joint ci ratio: 2.584687e-01	ci left: 5.658174e-05	ci right 7.363240e-05	k: 229	n:3540000
Cons ci ratio: 8.623812e-02	ci left: 5.581728e-04	ci right 6.087517e-04	k: 2064	n:3540000
KS ci ratio: 1.252025e-01	ci left: 2.595014e-04	ci right 2.944319e-04	k: 979	n:3540000
WT1   3540000 perm   5613 sec   (631 perm/sec)   p_kst 2.765537e-04   p_cons 5.830508e-04   p_joint 6.468927e-05

Joint ci ratio: 2.573522e-01	ci left: 5.694932e-05	ci right 7.402470e-05	k: 231	n:3550000
Cons ci ratio: 8.607153e-02	ci left: 5.588054e-04	ci right 6.093389e-04	k: 2072	n:3550000
KS ci ratio: 1.248842e-01	ci left: 2.601348e-04	ci right 2.950550e-04	k: 984	n:3550000
WT1   3550000 perm   5642 sec   (629 perm/sec)   p_kst 2.771831e-04   p_cons 5.836620e-04   p_joint 6.507042e-05

Joint ci ratio: 2.562500e-01	ci left: 5.731499e-05	ci right 7.441464e-05	k: 233	n:3560000
Cons ci ratio: 8.594724e-02	ci left: 5.588849e-04	ci right 6.093489e-04	k: 2078	n:3560000
KS ci ratio: 1.248209e-01	ci left: 2.596762e-04	ci right 2.945158e-04	k: 985	n:3560000
WT1   3560000 perm   5672 sec   (628 perm/sec)   p_kst 2.766854e-04   p_cons 5.837079e-04   p_joint 6.544944e-05

Joint ci ratio: 2.551618e-01	ci left: 5.767877e-05	ci right 7.480225e-05	k: 235	n:3570000
Cons ci ratio: 8.586470e-02	ci left: 5.584158e-04	ci right 6.087866e-04	k: 2082	n:3570000
KS ci ratio: 1.245685e-01	ci left: 2.600344e-04	ci right 2.948462e-04	k: 989	n:3570000
WT1   3570000 perm   5701 sec   (626 perm/sec)   p_kst 2.770308e-04   p_cons 5.831933e-04   p_joint 6.582633e-05

Joint ci ratio: 2.551618e-01	ci left: 5.751765e-05	ci right 7.459330e-05	k: 235	n:3580000
Cons ci ratio: 8.578239e-02	ci left: 5.579493e-04	ci right 6.082274e-04	k: 2086	n:3580000
KS ci ratio: 1.244429e-01	ci left: 2.598493e-04	ci right 2.945987e-04	k: 991	n:3580000
WT1   3580000 perm   5731 sec   (625 perm/sec)   p_kst 2.768156e-04   p_cons 5.826816e-04   p_joint 6.564246e-05

Joint ci ratio: 2.551618e-01	ci left: 5.735744e-05	ci right 7.438552e-05	k: 235	n:3590000
Cons ci ratio: 8.559799e-02	ci left: 5.588483e-04	ci right 6.090938e-04	k: 2095	n:3590000
KS ci ratio: 1.241927e-01	ci left: 2.602050e-04	ci right 2.949269e-04	k: 995	n:3590000
WT1   3590000 perm   5761 sec   (623 perm/sec)   p_kst 2.771588e-04   p_cons 5.835655e-04   p_joint 6.545961e-05

Joint ci ratio: 2.551619e-01	ci left: 5.719811e-05	ci right 7.417890e-05	k: 235	n:3600000
Cons ci ratio: 8.545539e-02	ci left: 5.591989e-04	ci right 6.093879e-04	k: 2102	n:3600000
KS ci ratio: 1.240682e-01	ci left: 2.600205e-04	ci right 2.946805e-04	k: 997	n:3600000
WT1   3600000 perm   5791 sec   (622 perm/sec)   p_kst 2.769444e-04   p_cons 5.838889e-04   p_joint 6.527778e-05

Joint ci ratio: 2.540874e-01	ci left: 5.755833e-05	ci right 7.456271e-05	k: 237	n:3610000
Cons ci ratio: 8.533375e-02	ci left: 5.592764e-04	ci right 6.093974e-04	k: 2108	n:3610000
KS ci ratio: 1.238203e-01	ci left: 2.603739e-04	ci right 2.950066e-04	k: 1001	n:3610000
WT1   3610000 perm   5821 sec   (620 perm/sec)   p_kst 2.772853e-04   p_cons 5.839335e-04   p_joint 6.565097e-05

Joint ci ratio: 2.535553e-01	ci left: 5.765800e-05	ci right 7.465051e-05	k: 238	n:3620000
Cons ci ratio: 8.521262e-02	ci left: 5.593535e-04	ci right 6.094067e-04	k: 2114	n:3620000
KS ci ratio: 1.237586e-01	ci left: 2.599223e-04	ci right 2.944764e-04	k: 1002	n:3620000
WT1   3620000 perm   5851 sec   (619 perm/sec)   p_kst 2.767956e-04   p_cons 5.839779e-04   p_joint 6.574586e-05

Joint ci ratio: 2.530265e-01	ci left: 5.775716e-05	ci right 7.473780e-05	k: 239	n:3630000
Cons ci ratio: 8.503186e-02	ci left: 5.602392e-04	ci right 6.102600e-04	k: 2123	n:3630000
KS ci ratio: 1.235125e-01	ci left: 2.602742e-04	ci right 2.948012e-04	k: 1006	n:3630000
WT1   3630000 perm   5881 sec   (617 perm/sec)   p_kst 2.771350e-04   p_cons 5.848485e-04   p_joint 6.584022e-05

Joint ci ratio: 2.525010e-01	ci left: 5.785581e-05	ci right 7.482456e-05	k: 240	n:3640000
Cons ci ratio: 8.489207e-02	ci left: 5.605823e-04	ci right 6.105474e-04	k: 2130	n:3640000
KS ci ratio: 1.232679e-01	ci left: 2.606241e-04	ci right 2.951241e-04	k: 1010	n:3640000
WT1   3640000 perm   5911 sec   (616 perm/sec)   p_kst 2.774725e-04   p_cons 5.851648e-04   p_joint 6.593407e-05

Joint ci ratio: 2.525010e-01	ci left: 5.769730e-05	ci right 7.461957e-05	k: 240	n:3650000
Cons ci ratio: 8.477281e-02	ci left: 5.606554e-04	ci right 6.105534e-04	k: 2136	n:3650000
KS ci ratio: 1.232680e-01	ci left: 2.599101e-04	ci right 2.943155e-04	k: 1010	n:3650000
WT1   3650000 perm   5941 sec   (614 perm/sec)   p_kst 2.767123e-04   p_cons 5.852055e-04   p_joint 6.575342e-05

Joint ci ratio: 2.519788e-01	ci left: 5.779561e-05	ci right 7.470615e-05	k: 241	n:3660000
Cons ci ratio: 8.465405e-02	ci left: 5.607282e-04	ci right 6.105592e-04	k: 2142	n:3660000
KS ci ratio: 1.230248e-01	ci left: 2.602592e-04	ci right 2.946379e-04	k: 1014	n:3660000
WT1   3660000 perm   5971 sec   (613 perm/sec)   p_kst 2.770492e-04   p_cons 5.852459e-04   p_joint 6.584699e-05

Joint ci ratio: 2.519788e-01	ci left: 5.763813e-05	ci right 7.450259e-05	k: 241	n:3670000
Cons ci ratio: 8.449646e-02	ci left: 5.613341e-04	ci right 6.111215e-04	k: 2150	n:3670000
KS ci ratio: 1.228434e-01	ci left: 2.603423e-04	ci right 2.946777e-04	k: 1017	n:3670000
WT1   3670000 perm   6003 sec   (611 perm/sec)   p_kst 2.771117e-04   p_cons 5.858311e-04   p_joint 6.566757e-05

Joint ci ratio: 2.514598e-01	ci left: 5.773610e-05	ci right 7.458898e-05	k: 242	n:3680000
Cons ci ratio: 8.439843e-02	ci left: 5.611387e-04	ci right 6.108482e-04	k: 2155	n:3680000
KS ci ratio: 1.225428e-01	ci left: 2.609519e-04	ci right 2.952773e-04	k: 1022	n:3680000
WT1   3680000 perm   6035 sec   (610 perm/sec)   p_kst 2.777174e-04   p_cons 5.855978e-04   p_joint 6.576087e-05

Joint ci ratio: 2.514598e-01	ci left: 5.757964e-05	ci right 7.438684e-05	k: 242	n:3690000
Cons ci ratio: 8.424226e-02	ci left: 5.617403e-04	ci right 6.114065e-04	k: 2163	n:3690000
KS ci ratio: 1.224232e-01	ci left: 2.607701e-04	ci right 2.950357e-04	k: 1024	n:3690000
WT1   3690000 perm   6065 sec   (608 perm/sec)   p_kst 2.775068e-04   p_cons 5.861789e-04   p_joint 6.558266e-05

Joint ci ratio: 2.514598e-01	ci left: 5.742401e-05	ci right 7.418580e-05	k: 242	n:3700000
Cons ci ratio: 8.416453e-02	ci left: 5.612804e-04	ci right 6.108579e-04	k: 2167	n:3700000
KS ci ratio: 1.222444e-01	ci left: 2.608513e-04	ci right 2.950739e-04	k: 1027	n:3700000
WT1   3700000 perm   6096 sec   (607 perm/sec)   p_kst 2.775676e-04   p_cons 5.856757e-04   p_joint 6.540541e-05

Joint ci ratio: 2.509440e-01	ci left: 5.752181e-05	ci right 7.427231e-05	k: 243	n:3710000
Cons ci ratio: 8.410639e-02	ci left: 5.605591e-04	ci right 6.100371e-04	k: 2170	n:3710000
KS ci ratio: 1.220665e-01	ci left: 2.609321e-04	ci right 2.951119e-04	k: 1030	n:3710000
WT1   3710000 perm   6127 sec   (606 perm/sec)   p_kst 2.776280e-04   p_cons 5.849057e-04   p_joint 6.549865e-05

Joint ci ratio: 2.504313e-01	ci left: 5.761911e-05	ci right 7.435833e-05	k: 244	n:3720000
Cons ci ratio: 8.402904e-02	ci left: 5.601049e-04	ci right 6.094951e-04	k: 2174	n:3720000
KS ci ratio: 1.217715e-01	ci left: 2.615338e-04	ci right 2.957036e-04	k: 1035	n:3720000
WT1   3720000 perm   6158 sec   (604 perm/sec)   p_kst 2.782258e-04   p_cons 5.844086e-04   p_joint 6.559140e-05

Joint ci ratio: 2.499218e-01	ci left: 5.771592e-05	ci right 7.444384e-05	k: 245	n:3730000
Cons ci ratio: 8.391337e-02	ci left: 5.601781e-04	ci right 6.095034e-04	k: 2180	n:3730000
KS ci ratio: 1.216541e-01	ci left: 2.613525e-04	ci right 2.954633e-04	k: 1037	n:3730000
WT1   3730000 perm   6188 sec   (603 perm/sec)   p_kst 2.780161e-04   p_cons 5.844504e-04   p_joint 6.568365e-05

Joint ci ratio: 2.494154e-01	ci left: 5.781225e-05	ci right 7.452887e-05	k: 246	n:3740000
Cons ci ratio: 8.377902e-02	ci left: 5.605127e-04	ci right 6.097846e-04	k: 2187	n:3740000
KS ci ratio: 1.215371e-01	ci left: 2.611722e-04	ci right 2.952244e-04	k: 1039	n:3740000
WT1   3740000 perm   6219 sec   (601 perm/sec)   p_kst 2.778075e-04   p_cons 5.847594e-04   p_joint 6.577540e-05

Joint ci ratio: 2.484116e-01	ci left: 5.815816e-05	ci right 7.489666e-05	k: 248	n:3750000
Cons ci ratio: 8.374080e-02	ci left: 5.595402e-04	ci right 6.087030e-04	k: 2189	n:3750000
KS ci ratio: 1.212460e-01	ci left: 2.617686e-04	ci right 2.958109e-04	k: 1044	n:3750000
WT1   3750000 perm   6250 sec   (600 perm/sec)   p_kst 2.784000e-04   p_cons 5.837333e-04   p_joint 6.613333e-05

Joint ci ratio: 2.474199e-01	ci left: 5.850235e-05	ci right 7.526236e-05	k: 250	n:3760000
Cons ci ratio: 8.366445e-02	ci left: 5.590936e-04	ci right 6.081702e-04	k: 2193	n:3760000
KS ci ratio: 1.210146e-01	ci left: 2.621040e-04	ci right 2.961202e-04	k: 1048	n:3760000
WT1   3760000 perm   6281 sec   (599 perm/sec)   p_kst 2.787234e-04   p_cons 5.832447e-04   p_joint 6.648936e-05

Joint ci ratio: 2.454716e-01	ci left: 5.934267e-05	ci right 7.618912e-05	k: 254	n:3770000
Cons ci ratio: 8.351231e-02	ci left: 5.596882e-04	ci right 6.087234e-04	k: 2201	n:3770000
KS ci ratio: 1.208419e-01	ci left: 2.621804e-04	ci right 2.961545e-04	k: 1051	n:3770000
WT1   3770000 perm   6312 sec   (597 perm/sec)   p_kst 2.787798e-04   p_cons 5.838196e-04   p_joint 6.737401e-05

Joint ci ratio: 2.454716e-01	ci left: 5.918567e-05	ci right 7.598756e-05	k: 254	n:3780000
Cons ci ratio: 8.336099e-02	ci left: 5.602798e-04	ci right 6.092735e-04	k: 2209	n:3780000
KS ci ratio: 1.207272e-01	ci left: 2.619999e-04	ci right 2.959161e-04	k: 1053	n:3780000
WT1   3780000 perm   6343 sec   (596 perm/sec)   p_kst 2.785714e-04   p_cons 5.843915e-04   p_joint 6.719577e-05

Joint ci ratio: 2.449917e-01	ci left: 5.927715e-05	ci right 7.606710e-05	k: 255	n:3790000
Cons ci ratio: 8.326686e-02	ci left: 5.600933e-04	ci right 6.090127e-04	k: 2214	n:3790000
KS ci ratio: 1.204988e-01	ci left: 2.623322e-04	ci right 2.962226e-04	k: 1057	n:3790000
WT1   3790000 perm   6374 sec   (595 perm/sec)   p_kst 2.788918e-04   p_cons 5.841689e-04   p_joint 6.728232e-05

Joint ci ratio: 2.445146e-01	ci left: 5.936818e-05	ci right 7.614619e-05	k: 256	n:3800000
Cons ci ratio: 8.321056e-02	ci left: 5.593924e-04	ci right 6.082159e-04	k: 2217	n:3800000
KS ci ratio: 1.201020e-01	ci left: 2.634285e-04	ci right 2.973406e-04	k: 1064	n:3800000
WT1   3800000 perm   6406 sec   (593 perm/sec)   p_kst 2.800000e-04   p_cons 5.834211e-04   p_joint 6.736842e-05

Joint ci ratio: 2.445146e-01	ci left: 5.921235e-05	ci right 7.594633e-05	k: 256	n:3810000
Cons ci ratio: 8.306088e-02	ci left: 5.599803e-04	ci right 6.087629e-04	k: 2225	n:3810000
KS ci ratio: 1.199894e-01	ci left: 2.632463e-04	ci right 2.971008e-04	k: 1066	n:3810000
WT1   3810000 perm   6437 sec   (592 perm/sec)   p_kst 2.797900e-04   p_cons 5.839895e-04   p_joint 6.719160e-05

Joint ci ratio: 2.445146e-01	ci left: 5.905735e-05	ci right 7.574752e-05	k: 256	n:3820000
Cons ci ratio: 8.300500e-02	ci left: 5.592834e-04	ci right 6.079710e-04	k: 2228	n:3820000
KS ci ratio: 1.199333e-01	ci left: 2.628111e-04	ci right 2.965927e-04	k: 1067	n:3820000
WT1   3820000 perm   6469 sec   (591 perm/sec)   p_kst 2.793194e-04   p_cons 5.832461e-04   p_joint 6.701571e-05

Joint ci ratio: 2.445146e-01	ci left: 5.890315e-05	ci right 7.554974e-05	k: 256	n:3830000
Cons ci ratio: 8.291206e-02	ci left: 5.591015e-04	ci right 6.077161e-04	k: 2233	n:3830000
KS ci ratio: 1.198211e-01	ci left: 2.626314e-04	ci right 2.963562e-04	k: 1069	n:3830000
WT1   3830000 perm   6501 sec   (589 perm/sec)   p_kst 2.791123e-04   p_cons 5.830287e-04   p_joint 6.684073e-05

Joint ci ratio: 2.445147e-01	ci left: 5.874976e-05	ci right 7.535300e-05	k: 256	n:3840000
Cons ci ratio: 8.280095e-02	ci left: 5.591756e-04	ci right 6.077284e-04	k: 2239	n:3840000
KS ci ratio: 1.198212e-01	ci left: 2.619475e-04	ci right 2.955844e-04	k: 1069	n:3840000
WT1   3840000 perm   6533 sec   (588 perm/sec)   p_kst 2.783854e-04   p_cons 5.830729e-04   p_joint 6.666667e-05

Joint ci ratio: 2.445147e-01	ci left: 5.859716e-05	ci right 7.515728e-05	k: 256	n:3850000
Cons ci ratio: 8.269027e-02	ci left: 5.592494e-04	ci right 6.077406e-04	k: 2245	n:3850000
KS ci ratio: 1.196536e-01	ci left: 2.620230e-04	ci right 2.956192e-04	k: 1072	n:3850000
WT1   3850000 perm   6565 sec   (586 perm/sec)   p_kst 2.784416e-04   p_cons 5.831169e-04   p_joint 6.649351e-05

Joint ci ratio: 2.440404e-01	ci left: 5.868856e-05	ci right 7.523747e-05	k: 257	n:3860000
Cons ci ratio: 8.261676e-02	ci left: 5.588154e-04	ci right 6.072238e-04	k: 2249	n:3860000
KS ci ratio: 1.194311e-01	ci left: 2.623495e-04	ci right 2.959206e-04	k: 1076	n:3860000
WT1   3860000 perm   6595 sec   (585 perm/sec)   p_kst 2.787565e-04   p_cons 5.826425e-04   p_joint 6.658031e-05

Joint ci ratio: 2.440404e-01	ci left: 5.853691e-05	ci right 7.504305e-05	k: 257	n:3870000
Cons ci ratio: 8.258010e-02	ci left: 5.578776e-04	ci right 6.061822e-04	k: 2251	n:3870000
KS ci ratio: 1.193204e-01	ci left: 2.621729e-04	ci right 2.956882e-04	k: 1078	n:3870000
WT1   3870000 perm   6626 sec   (584 perm/sec)   p_kst 2.785530e-04   p_cons 5.816537e-04   p_joint 6.640827e-05

Joint ci ratio: 2.440404e-01	ci left: 5.838604e-05	ci right 7.484965e-05	k: 257	n:3880000
Cons ci ratio: 8.254350e-02	ci left: 5.569446e-04	ci right 6.051460e-04	k: 2253	n:3880000
KS ci ratio: 1.190449e-01	ci left: 2.627475e-04	ci right 2.962531e-04	k: 1083	n:3880000
WT1   3880000 perm   6657 sec   (583 perm/sec)   p_kst 2.791237e-04   p_cons 5.806701e-04   p_joint 6.623711e-05

Joint ci ratio: 2.435688e-01	ci left: 5.847732e-05	ci right 7.492997e-05	k: 258	n:3890000
Cons ci ratio: 8.247037e-02	ci left: 5.565199e-04	ci right 6.046399e-04	k: 2257	n:3890000
KS ci ratio: 1.188258e-01	ci left: 2.630697e-04	ci right 2.965504e-04	k: 1087	n:3890000
WT1   3890000 perm   6688 sec   (582 perm/sec)   p_kst 2.794344e-04   p_cons 5.802057e-04   p_joint 6.632391e-05

Joint ci ratio: 2.435688e-01	ci left: 5.832738e-05	ci right 7.473785e-05	k: 258	n:3900000
Cons ci ratio: 8.237922e-02	ci left: 5.563485e-04	ci right 6.043980e-04	k: 2262	n:3900000
KS ci ratio: 1.186623e-01	ci left: 2.631416e-04	ci right 2.965821e-04	k: 1090	n:3900000
WT1   3900000 perm   6720 sec   (580 perm/sec)   p_kst 2.794872e-04   p_cons 5.800000e-04   p_joint 6.615385e-05

Joint ci ratio: 2.435688e-01	ci left: 5.817820e-05	ci right 7.454670e-05	k: 258	n:3910000
Cons ci ratio: 8.232470e-02	ci left: 5.556771e-04	ci right 6.036353e-04	k: 2265	n:3910000
KS ci ratio: 1.183913e-01	ci left: 2.637094e-04	ci right 2.971402e-04	k: 1095	n:3910000
WT1   3910000 perm   6753 sec   (579 perm/sec)   p_kst 2.800512e-04   p_cons 5.792839e-04   p_joint 6.598465e-05

Joint ci ratio: 2.435689e-01	ci left: 5.802979e-05	ci right 7.435653e-05	k: 258	n:3920000
Cons ci ratio: 8.221593e-02	ci left: 5.557587e-04	ci right 6.036575e-04	k: 2271	n:3920000
KS ci ratio: 1.183374e-01	ci left: 2.632842e-04	ci right 2.966449e-04	k: 1096	n:3920000
WT1   3920000 perm   6785 sec   (578 perm/sec)   p_kst 2.795918e-04   p_cons 5.793367e-04   p_joint 6.581633e-05

Joint ci ratio: 2.435689e-01	ci left: 5.788213e-05	ci right 7.416733e-05	k: 258	n:3930000
Cons ci ratio: 8.214367e-02	ci left: 5.553414e-04	ci right 6.031602e-04	k: 2275	n:3930000
KS ci ratio: 1.179615e-01	ci left: 2.643428e-04	ci right 2.977238e-04	k: 1103	n:3930000
WT1   3930000 perm   6818 sec   (576 perm/sec)   p_kst 2.806616e-04   p_cons 5.788804e-04   p_joint 6.564885e-05

Joint ci ratio: 2.435689e-01	ci left: 5.773522e-05	ci right 7.397909e-05	k: 258	n:3940000
Cons ci ratio: 8.203561e-02	ci left: 5.554235e-04	ci right 6.031834e-04	k: 2281	n:3940000
KS ci ratio: 1.178549e-01	ci left: 2.641646e-04	ci right 2.974908e-04	k: 1105	n:3940000
WT1   3940000 perm   6850 sec   (575 perm/sec)   p_kst 2.804569e-04   p_cons 5.789340e-04   p_joint 6.548223e-05

Joint ci ratio: 2.435689e-01	ci left: 5.758905e-05	ci right 7.379180e-05	k: 258	n:3950000
Cons ci ratio: 8.194589e-02	ci left: 5.552573e-04	ci right 6.029482e-04	k: 2286	n:3950000
KS ci ratio: 1.178016e-01	ci left: 2.637415e-04	ci right 2.969983e-04	k: 1106	n:3950000
WT1   3950000 perm   6883 sec   (574 perm/sec)   p_kst 2.800000e-04   p_cons 5.787342e-04   p_joint 6.531646e-05

Joint ci ratio: 2.426339e-01	ci left: 5.791791e-05	ci right 7.414121e-05	k: 260	n:3960000
Cons ci ratio: 8.189222e-02	ci left: 5.545971e-04	ci right 6.021987e-04	k: 2289	n:3960000
KS ci ratio: 1.176423e-01	ci left: 2.638107e-04	ci right 2.970281e-04	k: 1109	n:3960000
WT1   3960000 perm   6915 sec   (573 perm/sec)   p_kst 2.800505e-04   p_cons 5.780303e-04   p_joint 6.565657e-05

Joint ci ratio: 2.426339e-01	ci left: 5.777202e-05	ci right 7.395446e-05	k: 260	n:3970000
Cons ci ratio: 8.182081e-02	ci left: 5.541871e-04	ci right 6.017100e-04	k: 2293	n:3970000
KS ci ratio: 1.174837e-01	ci left: 2.638797e-04	ci right 2.970578e-04	k: 1112	n:3970000
WT1   3970000 perm   6948 sec   (571 perm/sec)   p_kst 2.801008e-04   p_cons 5.775819e-04   p_joint 6.549118e-05

Joint ci ratio: 2.417095e-01	ci left: 5.809889e-05	ci right 7.430159e-05	k: 262	n:3980000
Cons ci ratio: 8.173180e-02	ci left: 5.540253e-04	ci right 6.014801e-04	k: 2298	n:3980000
KS ci ratio: 1.172206e-01	ci left: 2.644361e-04	ci right 2.976046e-04	k: 1117	n:3980000
WT1   3980000 perm   6981 sec   (570 perm/sec)   p_kst 2.806533e-04   p_cons 5.773869e-04   p_joint 6.582915e-05

Joint ci ratio: 2.407957e-01	ci left: 5.842424e-05	ci right 7.464686e-05	k: 264	n:3990000
Cons ci ratio: 8.160764e-02	ci left: 5.543553e-04	ci right 6.017628e-04	k: 2305	n:3990000
KS ci ratio: 1.170115e-01	ci left: 2.647465e-04	ci right 2.978906e-04	k: 1121	n:3990000
WT1   3990000 perm   7014 sec   (569 perm/sec)   p_kst 2.809524e-04   p_cons 5.776942e-04   p_joint 6.616541e-05

Joint ci ratio: 2.403426e-01	ci left: 5.851311e-05	ci right 7.472528e-05	k: 265	n:4000000
Cons ci ratio: 8.150168e-02	ci left: 5.544388e-04	ci right 6.017890e-04	k: 2311	n:4000000
KS ci ratio: 1.168035e-01	ci left: 2.650554e-04	ci right 2.981751e-04	k: 1125	n:4000000
WT1   4000000 perm   7047 sec   (568 perm/sec)   p_kst 2.812500e-04   p_cons 5.777500e-04   p_joint 6.625000e-05

Joint ci ratio: 2.394441e-01	ci left: 5.883597e-05	ci right 7.506761e-05	k: 267	n:4010000
Cons ci ratio: 8.130843e-02	ci left: 5.557435e-04	ci right 6.030872e-04	k: 2322	n:4010000
KS ci ratio: 1.166482e-01	ci left: 2.651207e-04	ci right 2.982015e-04	k: 1128	n:4010000
WT1   4010000 perm   7080 sec   (566 perm/sec)   p_kst 2.812968e-04   p_cons 5.790524e-04   p_joint 6.658354e-05

Joint ci ratio: 2.394441e-01	ci left: 5.868961e-05	ci right 7.488088e-05	k: 267	n:4020000
Cons ci ratio: 8.113394e-02	ci left: 5.567981e-04	ci right 6.041251e-04	k: 2332	n:4020000
KS ci ratio: 1.165966e-01	ci left: 2.647027e-04	ci right 2.977157e-04	k: 1129	n:4020000
WT1   4020000 perm   7113 sec   (565 perm/sec)   p_kst 2.808458e-04   p_cons 5.800995e-04   p_joint 6.641791e-05

Joint ci ratio: 2.394441e-01	ci left: 5.854397e-05	ci right 7.469507e-05	k: 267	n:4030000
Cons ci ratio: 8.099517e-02	ci left: 5.573613e-04	ci right 6.046514e-04	k: 2340	n:4030000
KS ci ratio: 1.164935e-01	ci left: 2.645276e-04	ci right 2.974877e-04	k: 1131	n:4030000
WT1   4030000 perm   7146 sec   (564 perm/sec)   p_kst 2.806452e-04   p_cons 5.806452e-04   p_joint 6.625310e-05

Joint ci ratio: 2.389986e-01	ci left: 5.863175e-05	ci right 7.477251e-05	k: 268	n:4040000
Cons ci ratio: 8.089157e-02	ci left: 5.574368e-04	ci right 6.046699e-04	k: 2346	n:4040000
KS ci ratio: 1.164421e-01	ci left: 2.641132e-04	ci right 2.970060e-04	k: 1132	n:4040000
WT1   4040000 perm   7180 sec   (563 perm/sec)   p_kst 2.801980e-04   p_cons 5.806931e-04   p_joint 6.633663e-05

Joint ci ratio: 2.403427e-01	ci left: 5.779072e-05	ci right 7.380275e-05	k: 265	n:4050000
Cons ci ratio: 8.078837e-02	ci left: 5.575120e-04	ci right 6.046883e-04	k: 2352	n:4050000
KS ci ratio: 1.162371e-01	ci left: 2.644200e-04	ci right 2.972891e-04	k: 1136	n:4050000
WT1   4050000 perm   7214 sec   (561 perm/sec)   p_kst 2.804938e-04   p_cons 5.807407e-04   p_joint 6.543210e-05

Joint ci ratio: 2.394442e-01	ci left: 5.811138e-05	ci right 7.414314e-05	k: 267	n:4060000
Cons ci ratio: 8.068556e-02	ci left: 5.575868e-04	ci right 6.047066e-04	k: 2358	n:4060000
KS ci ratio: 1.161350e-01	ci left: 2.642470e-04	ci right 2.970638e-04	k: 1138	n:4060000
WT1   4060000 perm   7248 sec   (560 perm/sec)   p_kst 2.802956e-04   p_cons 5.807882e-04   p_joint 6.576355e-05

Joint ci ratio: 2.394442e-01	ci left: 5.796860e-05	ci right 7.396097e-05	k: 267	n:4070000
Cons ci ratio: 8.068562e-02	ci left: 5.562168e-04	ci right 6.032208e-04	k: 2358	n:4070000
KS ci ratio: 1.160841e-01	ci left: 2.638363e-04	ci right 2.965867e-04	k: 1139	n:4070000
WT1   4070000 perm   7282 sec   (559 perm/sec)   p_kst 2.798526e-04   p_cons 5.793612e-04   p_joint 6.560197e-05

Joint ci ratio: 2.381151e-01	ci left: 5.851783e-05	ci right 7.455889e-05	k: 270	n:4080000
Cons ci ratio: 8.061732e-02	ci left: 5.558141e-04	ci right 6.027425e-04	k: 2362	n:4080000
KS ci ratio: 1.159317e-01	ci left: 2.639036e-04	ci right 2.966164e-04	k: 1142	n:4080000
WT1   4080000 perm   7316 sec   (558 perm/sec)   p_kst 2.799020e-04   p_cons 5.789216e-04   p_joint 6.617647e-05

Joint ci ratio: 2.394442e-01	ci left: 5.768514e-05	ci right 7.359930e-05	k: 267	n:4090000
Cons ci ratio: 8.051516e-02	ci left: 5.558926e-04	ci right 6.027654e-04	k: 2368	n:4090000
KS ci ratio: 1.157293e-01	ci left: 2.642080e-04	ci right 2.968975e-04	k: 1146	n:4090000
WT1   4090000 perm   7350 sec   (556 perm/sec)   p_kst 2.801956e-04   p_cons 5.789731e-04   p_joint 6.528117e-05

Joint ci ratio: 2.385557e-01	ci left: 5.800304e-05	ci right 7.393675e-05	k: 269	n:4100000
Cons ci ratio: 8.036262e-02	ci left: 5.566877e-04	ci right 6.035345e-04	k: 2377	n:4100000
KS ci ratio: 1.155783e-01	ci left: 2.642741e-04	ci right 2.969262e-04	k: 1149	n:4100000
WT1   4100000 perm   7384 sec   (555 perm/sec)   p_kst 2.802439e-04   p_cons 5.797561e-04   p_joint 6.560976e-05

Joint ci ratio: 2.385557e-01	ci left: 5.786191e-05	ci right 7.375686e-05	k: 269	n:4110000
Cons ci ratio: 8.031201e-02	ci left: 5.560485e-04	ci right 6.028106e-04	k: 2380	n:4110000
KS ci ratio: 1.153778e-01	ci left: 2.645763e-04	ci right 2.972051e-04	k: 1153	n:4110000
WT1   4110000 perm   7418 sec   (554 perm/sec)   p_kst 2.805353e-04   p_cons 5.790754e-04   p_joint 6.545012e-05

Joint ci ratio: 2.381152e-01	ci left: 5.794969e-05	ci right 7.383502e-05	k: 270	n:4120000
Cons ci ratio: 8.022782e-02	ci left: 5.558881e-04	ci right 6.025854e-04	k: 2385	n:4120000
KS ci ratio: 1.152281e-01	ci left: 2.646412e-04	ci right 2.972329e-04	k: 1156	n:4120000
WT1   4120000 perm   7452 sec   (553 perm/sec)   p_kst 2.805825e-04   p_cons 5.788835e-04   p_joint 6.553398e-05

Joint ci ratio: 2.376771e-01	ci left: 5.803708e-05	ci right 7.391278e-05	k: 271	n:4130000
Cons ci ratio: 8.014390e-02	ci left: 5.557285e-04	ci right 6.023613e-04	k: 2390	n:4130000
KS ci ratio: 1.151783e-01	ci left: 2.642356e-04	ci right 2.967623e-04	k: 1157	n:4130000
WT1   4130000 perm   7486 sec   (552 perm/sec)   p_kst 2.801453e-04   p_cons 5.786925e-04   p_joint 6.561743e-05

Joint ci ratio: 2.376771e-01	ci left: 5.789689e-05	ci right 7.373424e-05	k: 271	n:4140000
Cons ci ratio: 8.011044e-02	ci left: 5.548596e-04	ci right 6.013991e-04	k: 2392	n:4140000
KS ci ratio: 1.150790e-01	ci left: 2.640665e-04	ci right 2.965425e-04	k: 1159	n:4140000
WT1   4140000 perm   7520 sec   (551 perm/sec)   p_kst 2.799517e-04   p_cons 5.777778e-04   p_joint 6.545894e-05

Joint ci ratio: 2.376771e-01	ci left: 5.775738e-05	ci right 7.355657e-05	k: 271	n:4150000
Cons ci ratio: 8.001019e-02	ci left: 5.549394e-04	ci right 6.014247e-04	k: 2398	n:4150000
KS ci ratio: 1.149305e-01	ci left: 2.641323e-04	ci right 2.965716e-04	k: 1162	n:4150000
WT1   4150000 perm   7554 sec   (549 perm/sec)   p_kst 2.800000e-04   p_cons 5.778313e-04   p_joint 6.530120e-05

Joint ci ratio: 2.372414e-01	ci left: 5.784463e-05	ci right 7.363441e-05	k: 272	n:4160000
Cons ci ratio: 7.996024e-02	ci left: 5.543121e-04	ci right 6.007145e-04	k: 2401	n:4160000
KS ci ratio: 1.148318e-01	ci left: 2.639644e-04	ci right 2.963533e-04	k: 1164	n:4160000
WT1   4160000 perm   7589 sec   (548 perm/sec)   p_kst 2.798077e-04   p_cons 5.771635e-04   p_joint 6.538462e-05

Joint ci ratio: 2.372414e-01	ci left: 5.770591e-05	ci right 7.345783e-05	k: 272	n:4170000
Cons ci ratio: 7.992701e-02	ci left: 5.534529e-04	ci right 5.997632e-04	k: 2403	n:4170000
KS ci ratio: 1.147826e-01	ci left: 2.635643e-04	ci right 2.958893e-04	k: 1165	n:4170000
WT1   4170000 perm   7623 sec   (547 perm/sec)   p_kst 2.793765e-04   p_cons 5.762590e-04   p_joint 6.522782e-05

Joint ci ratio: 2.372414e-01	ci left: 5.756786e-05	ci right 7.328210e-05	k: 272	n:4180000
Cons ci ratio: 7.986061e-02	ci left: 5.530666e-04	ci right 5.993044e-04	k: 2407	n:4180000
KS ci ratio: 1.146843e-01	ci left: 2.633985e-04	ci right 2.956736e-04	k: 1167	n:4180000
WT1   4180000 perm   7658 sec   (546 perm/sec)   p_kst 2.791866e-04   p_cons 5.758373e-04   p_joint 6.507177e-05

Joint ci ratio: 2.372414e-01	ci left: 5.743046e-05	ci right 7.310720e-05	k: 272	n:4190000
Cons ci ratio: 7.977784e-02	ci left: 5.529162e-04	ci right 5.990912e-04	k: 2412	n:4190000
KS ci ratio: 1.145862e-01	ci left: 2.632335e-04	ci right 2.954589e-04	k: 1169	n:4190000
WT1   4190000 perm   7692 sec   (545 perm/sec)   p_kst 2.789976e-04   p_cons 5.756563e-04   p_joint 6.491647e-05

Joint ci ratio: 2.368081e-01	ci left: 5.751768e-05	ci right 7.318534e-05	k: 273	n:4200000
Cons ci ratio: 7.974483e-02	ci left: 5.520664e-04	ci right 5.981505e-04	k: 2414	n:4200000
KS ci ratio: 1.144884e-01	ci left: 2.630693e-04	ci right 2.952453e-04	k: 1171	n:4200000
WT1   4200000 perm   7727 sec   (544 perm/sec)   p_kst 2.788095e-04   p_cons 5.747619e-04   p_joint 6.500000e-05

Joint ci ratio: 2.148062e-01	ci left: 7.060459e-05	ci right 8.781517e-05	k: 332	n:4210000
Cons ci ratio: 7.961306e-02	ci left: 5.526174e-04	ci right 5.986678e-04	k: 2422	n:4210000
KS ci ratio: 1.180697e-01	ci left: 2.463007e-04	ci right 2.774338e-04	k: 1101	n:4210000
WT1   4210000 perm   7762 sec   (542 perm/sec)   p_kst 2.615202e-04   p_cons 5.752969e-04   p_joint 7.885986e-05

Joint ci ratio: 2.144843e-01	ci left: 7.066151e-05	ci right 8.785676e-05	k: 333	n:4220000
Cons ci ratio: 7.951467e-02	ci left: 5.527014e-04	ci right 5.986992e-04	k: 2428	n:4220000
KS ci ratio: 1.179093e-01	ci left: 2.464069e-04	ci right 2.775083e-04	k: 1104	n:4220000
WT1   4220000 perm   7796 sec   (541 perm/sec)   p_kst 2.616114e-04   p_cons 5.753555e-04   p_joint 7.890995e-05

Joint ci ratio: 2.144844e-01	ci left: 7.049446e-05	ci right 8.764906e-05	k: 333	n:4230000
Cons ci ratio: 7.943296e-02	ci left: 5.525534e-04	ci right 5.984894e-04	k: 2433	n:4230000
KS ci ratio: 1.176964e-01	ci left: 2.467422e-04	ci right 2.778257e-04	k: 1108	n:4230000
WT1   4230000 perm   7831 sec   (540 perm/sec)   p_kst 2.619385e-04   p_cons 5.751773e-04   p_joint 7.872340e-05

Joint ci ratio: 2.144844e-01	ci left: 7.032820e-05	ci right 8.744235e-05	k: 333	n:4240000
Cons ci ratio: 7.936779e-02	ci left: 5.521748e-04	ci right 5.980400e-04	k: 2437	n:4240000
KS ci ratio: 1.176434e-01	ci left: 2.463892e-04	ci right 2.774132e-04	k: 1109	n:4240000
WT1   4240000 perm   7866 sec   (539 perm/sec)   p_kst 2.615566e-04   p_cons 5.747642e-04   p_joint 7.853774e-05

Joint ci ratio: 2.144844e-01	ci left: 7.016272e-05	ci right 8.723660e-05	k: 333	n:4250000
Cons ci ratio: 7.933529e-02	ci left: 5.513368e-04	ci right 5.971128e-04	k: 2439	n:4250000
KS ci ratio: 1.175905e-01	ci left: 2.460378e-04	ci right 2.770027e-04	k: 1110	n:4250000
WT1   4250000 perm   7901 sec   (538 perm/sec)   p_kst 2.611765e-04   p_cons 5.738824e-04   p_joint 7.835294e-05

Joint ci ratio: 2.144844e-01	ci left: 6.999802e-05	ci right 8.703182e-05	k: 333	n:4260000
Cons ci ratio: 7.930283e-02	ci left: 5.505028e-04	ci right 5.961899e-04	k: 2441	n:4260000
KS ci ratio: 1.175376e-01	ci left: 2.456881e-04	ci right 2.765941e-04	k: 1111	n:4260000
WT1   4260000 perm   7937 sec   (537 perm/sec)   p_kst 2.607981e-04   p_cons 5.730047e-04   p_joint 7.816901e-05

Joint ci ratio: 2.144844e-01	ci left: 6.983409e-05	ci right 8.682800e-05	k: 333	n:4270000
Cons ci ratio: 7.920558e-02	ci left: 5.505908e-04	ci right 5.962267e-04	k: 2447	n:4270000
KS ci ratio: 1.174321e-01	ci left: 2.455673e-04	ci right 2.764285e-04	k: 1113	n:4270000
WT1   4270000 perm   7972 sec   (536 perm/sec)   p_kst 2.606557e-04   p_cons 5.730679e-04   p_joint 7.798595e-05

Joint ci ratio: 2.141641e-01	ci left: 6.989203e-05	ci right 8.687130e-05	k: 334	n:4280000
Cons ci ratio: 7.909257e-02	ci left: 5.509076e-04	ci right 5.965015e-04	k: 2454	n:4280000
KS ci ratio: 1.173268e-01	ci left: 2.454471e-04	ci right 2.762636e-04	k: 1115	n:4280000
WT1   4280000 perm   8007 sec   (535 perm/sec)   p_kst 2.605140e-04   p_cons 5.733645e-04   p_joint 7.803738e-05

Joint ci ratio: 2.138451e-01	ci left: 6.994972e-05	ci right 8.691437e-05	k: 335	n:4290000
Cons ci ratio: 7.894796e-02	ci left: 5.516799e-04	ci right 5.972504e-04	k: 2463	n:4290000
KS ci ratio: 1.171171e-01	ci left: 2.457800e-04	ci right 2.765794e-04	k: 1119	n:4290000
WT1   4290000 perm   8043 sec   (533 perm/sec)   p_kst 2.608392e-04   p_cons 5.741259e-04   p_joint 7.808858e-05

Joint ci ratio: 2.138452e-01	ci left: 6.978704e-05	ci right 8.671225e-05	k: 335	n:4300000
Cons ci ratio: 7.886799e-02	ci left: 5.515367e-04	ci right 5.970471e-04	k: 2468	n:4300000
KS ci ratio: 1.170127e-01	ci left: 2.456600e-04	ci right 2.764149e-04	k: 1121	n:4300000
WT1   4300000 perm   8078 sec   (532 perm/sec)   p_kst 2.606977e-04   p_cons 5.739535e-04   p_joint 7.790698e-05

Joint ci ratio: 2.135276e-01	ci left: 6.984473e-05	ci right 8.675548e-05	k: 336	n:4310000
Cons ci ratio: 7.875641e-02	ci left: 5.518492e-04	ci right 5.973180e-04	k: 2475	n:4310000
KS ci ratio: 1.167010e-01	ci left: 2.464414e-04	ci right 2.772063e-04	k: 1127	n:4310000
WT1   4310000 perm   8113 sec   (531 perm/sec)   p_kst 2.614849e-04   p_cons 5.742459e-04   p_joint 7.795824e-05

Joint ci ratio: 2.135277e-01	ci left: 6.968305e-05	ci right 8.655465e-05	k: 336	n:4320000
Cons ci ratio: 7.870877e-02	ci left: 5.512525e-04	ci right 5.966435e-04	k: 2478	n:4320000
KS ci ratio: 1.164946e-01	ci left: 2.467699e-04	ci right 2.775176e-04	k: 1131	n:4320000
WT1   4320000 perm   8149 sec   (530 perm/sec)   p_kst 2.618056e-04   p_cons 5.736111e-04   p_joint 7.777778e-05

Joint ci ratio: 2.135277e-01	ci left: 6.952212e-05	ci right 8.635476e-05	k: 336	n:4330000
Cons ci ratio: 7.862952e-02	ci left: 5.511114e-04	ci right 5.964430e-04	k: 2483	n:4330000
KS ci ratio: 1.164947e-01	ci left: 2.462000e-04	ci right 2.768767e-04	k: 1131	n:4330000
WT1   4330000 perm   8185 sec   (529 perm/sec)   p_kst 2.612009e-04   p_cons 5.734411e-04   p_joint 7.759815e-05

Joint ci ratio: 2.128968e-01	ci left: 6.979815e-05	ci right 8.664118e-05	k: 338	n:4340000
Cons ci ratio: 7.853472e-02	ci left: 5.511969e-04	ci right 5.964783e-04	k: 2489	n:4340000
KS ci ratio: 1.163406e-01	ci left: 2.463038e-04	ci right 2.769501e-04	k: 1134	n:4340000
WT1   4340000 perm   8220 sec   (528 perm/sec)   p_kst 2.612903e-04   p_cons 5.735023e-04   p_joint 7.788018e-05

Joint ci ratio: 2.128969e-01	ci left: 6.963770e-05	ci right 8.644201e-05	k: 338	n:4350000
Cons ci ratio: 7.848748e-02	ci left: 5.506059e-04	ci right 5.958103e-04	k: 2492	n:4350000
KS ci ratio: 1.160852e-01	ci left: 2.468536e-04	ci right 2.774962e-04	k: 1139	n:4350000
WT1   4350000 perm   8256 sec   (527 perm/sec)   p_kst 2.618391e-04   p_cons 5.728736e-04   p_joint 7.770115e-05

Joint ci ratio: 2.125835e-01	ci left: 6.969512e-05	ci right 8.648531e-05	k: 339	n:4360000
Cons ci ratio: 7.840890e-02	ci left: 5.504673e-04	ci right 5.956131e-04	k: 2497	n:4360000
KS ci ratio: 1.159327e-01	ci left: 2.469555e-04	ci right 2.775678e-04	k: 1142	n:4360000
WT1   4360000 perm   8292 sec   (526 perm/sec)   p_kst 2.619266e-04   p_cons 5.727064e-04   p_joint 7.775229e-05

Joint ci ratio: 2.125836e-01	ci left: 6.953563e-05	ci right 8.628740e-05	k: 339	n:4370000
Cons ci ratio: 7.829926e-02	ci left: 5.507781e-04	ci right 5.958833e-04	k: 2504	n:4370000
KS ci ratio: 1.158820e-01	ci left: 2.466126e-04	ci right 2.771681e-04	k: 1143	n:4370000
WT1   4370000 perm   8328 sec   (525 perm/sec)   p_kst 2.615561e-04   p_cons 5.729977e-04   p_joint 7.757437e-05

Joint ci ratio: 2.122716e-01	ci left: 6.959304e-05	ci right 8.633084e-05	k: 340	n:4380000
Cons ci ratio: 7.826805e-02	ci left: 5.499683e-04	ci right 5.949884e-04	k: 2506	n:4380000
KS ci ratio: 1.156800e-01	ci left: 2.469364e-04	ci right 2.774750e-04	k: 1147	n:4380000
WT1   4380000 perm   8364 sec   (524 perm/sec)   p_kst 2.618721e-04   p_cons 5.721461e-04   p_joint 7.762557e-05

Joint ci ratio: 2.119610e-01	ci left: 6.965020e-05	ci right 8.637405e-05	k: 341	n:4390000
Cons ci ratio: 7.820570e-02	ci left: 5.496089e-04	ci right 5.945621e-04	k: 2510	n:4390000
KS ci ratio: 1.155793e-01	ci left: 2.468163e-04	ci right 2.773117e-04	k: 1149	n:4390000
WT1   4390000 perm   8400 sec   (523 perm/sec)   p_kst 2.617312e-04   p_cons 5.717540e-04   p_joint 7.767654e-05

Joint ci ratio: 2.119611e-01	ci left: 6.949191e-05	ci right 8.617775e-05	k: 341	n:4400000
Cons ci ratio: 7.809691e-02	ci left: 5.499196e-04	ci right 5.948328e-04	k: 2517	n:4400000
KS ci ratio: 1.153788e-01	ci left: 2.471382e-04	ci right 2.776167e-04	k: 1153	n:4400000
WT1   4400000 perm   8436 sec   (522 perm/sec)   p_kst 2.620455e-04   p_cons 5.720455e-04   p_joint 7.750000e-05

Joint ci ratio: 2.116518e-01	ci left: 6.954906e-05	ci right 8.622110e-05	k: 342	n:4410000
Cons ci ratio: 7.800403e-02	ci left: 5.500066e-04	ci right 5.948710e-04	k: 2523	n:4410000
KS ci ratio: 1.152790e-01	ci left: 2.470182e-04	ci right 2.774538e-04	k: 1155	n:4410000
WT1   4410000 perm   8472 sec   (521 perm/sec)   p_kst 2.619048e-04   p_cons 5.721088e-04   p_joint 7.755102e-05

Joint ci ratio: 2.113440e-01	ci left: 6.960597e-05	ci right 8.626424e-05	k: 343	n:4420000
Cons ci ratio: 7.789607e-02	ci left: 5.503151e-04	ci right 5.951398e-04	k: 2530	n:4420000
KS ci ratio: 1.150800e-01	ci left: 2.473382e-04	ci right 2.777571e-04	k: 1159	n:4420000
WT1   4420000 perm   8509 sec   (519 perm/sec)   p_kst 2.622172e-04   p_cons 5.723982e-04   p_joint 7.760181e-05

Joint ci ratio: 2.113440e-01	ci left: 6.944885e-05	ci right 8.606952e-05	k: 343	n:4430000
Cons ci ratio: 7.784997e-02	ci left: 5.497369e-04	ci right 5.944867e-04	k: 2533	n:4430000
KS ci ratio: 1.148821e-01	ci left: 2.476569e-04	ci right 2.780590e-04	k: 1163	n:4430000
WT1   4430000 perm   8546 sec   (518 perm/sec)   p_kst 2.625282e-04   p_cons 5.717833e-04   p_joint 7.742664e-05

Joint ci ratio: 2.110375e-01	ci left: 6.950574e-05	ci right 8.611279e-05	k: 344	n:4440000
Cons ci ratio: 7.760526e-02	ci left: 5.520323e-04	ci right 5.968214e-04	k: 2549	n:4440000
KS ci ratio: 1.147836e-01	ci left: 2.475366e-04	ci right 2.778961e-04	k: 1165	n:4440000
WT1   4440000 perm   8582 sec   (517 perm/sec)   p_kst 2.623874e-04   p_cons 5.740991e-04   p_joint 7.747748e-05

Joint ci ratio: 2.110375e-01	ci left: 6.934955e-05	ci right 8.591927e-05	k: 344	n:4450000
Cons ci ratio: 7.755968e-02	ci left: 5.514528e-04	ci right 5.961674e-04	k: 2552	n:4450000
KS ci ratio: 1.146362e-01	ci left: 2.476352e-04	ci right 2.779651e-04	k: 1168	n:4450000
WT1   4450000 perm   8619 sec   (516 perm/sec)   p_kst 2.624719e-04   p_cons 5.734831e-04   p_joint 7.730337e-05

Joint ci ratio: 2.110375e-01	ci left: 6.919406e-05	ci right 8.572663e-05	k: 344	n:4460000
Cons ci ratio: 7.742330e-02	ci left: 5.521952e-04	ci right 5.968878e-04	k: 2561	n:4460000
KS ci ratio: 1.145383e-01	ci left: 2.475155e-04	ci right 2.778032e-04	k: 1170	n:4460000
WT1   4460000 perm   8655 sec   (515 perm/sec)   p_kst 2.623318e-04   p_cons 5.742152e-04   p_joint 7.713004e-05

Joint ci ratio: 2.110375e-01	ci left: 6.903926e-05	ci right 8.553485e-05	k: 344	n:4470000
Cons ci ratio: 7.734787e-02	ci left: 5.520568e-04	ci right 5.966927e-04	k: 2566	n:4470000
KS ci ratio: 1.144894e-01	ci left: 2.471791e-04	ci right 2.774118e-04	k: 1171	n:4470000
WT1   4470000 perm   8691 sec   (514 perm/sec)   p_kst 2.619687e-04   p_cons 5.740492e-04   p_joint 7.695749e-05

Joint ci ratio: 2.107323e-01	ci left: 6.909658e-05	ci right 8.557891e-05	k: 345	n:4480000
Cons ci ratio: 7.728769e-02	ci left: 5.517002e-04	ci right 5.962709e-04	k: 2570	n:4480000
KS ci ratio: 1.142945e-01	ci left: 2.474946e-04	ci right 2.777110e-04	k: 1175	n:4480000
WT1   4480000 perm   8729 sec   (513 perm/sec)   p_kst 2.622768e-04   p_cons 5.736607e-04   p_joint 7.700893e-05

Joint ci ratio: 2.135280e-01	ci left: 6.704471e-05	ci right 8.327754e-05	k: 336	n:4490000
Cons ci ratio: 7.721265e-02	ci left: 5.515635e-04	ci right 5.960780e-04	k: 2575	n:4490000
KS ci ratio: 1.141006e-01	ci left: 2.478089e-04	ci right 2.780088e-04	k: 1179	n:4490000
WT1   4490000 perm   8766 sec   (512 perm/sec)   p_kst 2.625835e-04   p_cons 5.734967e-04   p_joint 7.483296e-05

Joint ci ratio: 2.135280e-01	ci left: 6.689572e-05	ci right 8.309248e-05	k: 336	n:4500000
Cons ci ratio: 7.713783e-02	ci left: 5.514275e-04	ci right 5.958859e-04	k: 2580	n:4500000
KS ci ratio: 1.140040e-01	ci left: 2.476899e-04	ci right 2.778481e-04	k: 1181	n:4500000
WT1   4500000 perm   8803 sec   (511 perm/sec)   p_kst 2.624444e-04   p_cons 5.733333e-04   p_joint 7.466667e-05

Joint ci ratio: 2.132119e-01	ci left: 6.695727e-05	ci right 8.314180e-05	k: 337	n:4510000
Cons ci ratio: 7.703343e-02	ci left: 5.517270e-04	ci right 5.961467e-04	k: 2587	n:4510000
KS ci ratio: 1.139077e-01	ci left: 2.475716e-04	ci right 2.776881e-04	k: 1183	n:4510000
WT1   4510000 perm   8840 sec   (510 perm/sec)   p_kst 2.623060e-04   p_cons 5.736142e-04   p_joint 7.472284e-05

Joint ci ratio: 2.128972e-01	ci left: 6.701857e-05	ci right 8.319088e-05	k: 338	n:4520000
Cons ci ratio: 7.692945e-02	ci left: 5.520252e-04	ci right 5.964062e-04	k: 2594	n:4520000
KS ci ratio: 1.138116e-01	ci left: 2.474537e-04	ci right 2.775288e-04	k: 1185	n:4520000
WT1   4520000 perm   8877 sec   (509 perm/sec)   p_kst 2.621681e-04   p_cons 5.738938e-04   p_joint 7.477876e-05

Joint ci ratio: 2.128972e-01	ci left: 6.687063e-05	ci right 8.300724e-05	k: 338	n:4530000
Cons ci ratio: 7.678162e-02	ci left: 5.529717e-04	ci right 5.973396e-04	k: 2604	n:4530000
KS ci ratio: 1.138117e-01	ci left: 2.469074e-04	ci right 2.769162e-04	k: 1185	n:4530000
WT1   4530000 perm   8917 sec   (508 perm/sec)   p_kst 2.615894e-04   p_cons 5.748344e-04   p_joint 7.461369e-05

Joint ci ratio: 2.125839e-01	ci left: 6.693186e-05	ci right 8.305639e-05	k: 339	n:4540000
Cons ci ratio: 7.675219e-02	ci left: 5.521858e-04	ci right 5.964728e-04	k: 2606	n:4540000
KS ci ratio: 1.137158e-01	ci left: 2.467916e-04	ci right 2.767593e-04	k: 1187	n:4540000
WT1   4540000 perm   8954 sec   (507 perm/sec)   p_kst 2.614537e-04   p_cons 5.740088e-04   p_joint 7.466960e-05

Joint ci ratio: 2.122719e-01	ci left: 6.699285e-05	ci right 8.310530e-05	k: 340	n:4550000
Cons ci ratio: 7.666402e-02	ci left: 5.522656e-04	ci right 5.965059e-04	k: 2612	n:4550000
KS ci ratio: 1.135249e-01	ci left: 2.471033e-04	ci right 2.770551e-04	k: 1191	n:4550000
WT1   4550000 perm   8991 sec   (506 perm/sec)   p_kst 2.617582e-04   p_cons 5.740659e-04   p_joint 7.472527e-05

Joint ci ratio: 2.119614e-01	ci left: 6.705359e-05	ci right 8.315398e-05	k: 341	n:4560000
Cons ci ratio: 7.654691e-02	ci left: 5.527752e-04	ci right 5.969857e-04	k: 2620	n:4560000
KS ci ratio: 1.134773e-01	ci left: 2.467745e-04	ci right 2.766731e-04	k: 1192	n:4560000
WT1   4560000 perm   9028 sec   (505 perm/sec)   p_kst 2.614035e-04   p_cons 5.745614e-04   p_joint 7.478070e-05

Joint ci ratio: 2.119614e-01	ci left: 6.690686e-05	ci right 8.297203e-05	k: 341	n:4570000
Cons ci ratio: 7.645944e-02	ci left: 5.528535e-04	ci right 5.970174e-04	k: 2626	n:4570000
KS ci ratio: 1.133823e-01	ci left: 2.466597e-04	ci right 2.765177e-04	k: 1194	n:4570000
WT1   4570000 perm   9066 sec   (504 perm/sec)   p_kst 2.612691e-04   p_cons 5.746171e-04   p_joint 7.461707e-05

Joint ci ratio: 2.119614e-01	ci left: 6.676077e-05	ci right 8.279087e-05	k: 341	n:4580000
Cons ci ratio: 7.643038e-02	ci left: 5.520747e-04	ci right 5.961589e-04	k: 2628	n:4580000
KS ci ratio: 1.133823e-01	ci left: 2.461212e-04	ci right 2.759140e-04	k: 1194	n:4580000
WT1   4580000 perm   9106 sec   (503 perm/sec)   p_kst 2.606987e-04   p_cons 5.737991e-04   p_joint 7.445415e-05

Joint ci ratio: 2.135281e-01	ci left: 6.558403e-05	ci right 8.146322e-05	k: 336	n:4590000
Cons ci ratio: 7.637232e-02	ci left: 5.517267e-04	ci right 5.957482e-04	k: 2632	n:4590000
KS ci ratio: 1.132876e-01	ci left: 2.460083e-04	ci right 2.757609e-04	k: 1196	n:4590000
WT1   4590000 perm   9145 sec   (502 perm/sec)   p_kst 2.605664e-04   p_cons 5.734205e-04   p_joint 7.320261e-05

Joint ci ratio: 2.132120e-01	ci left: 6.564723e-05	ci right 8.151512e-05	k: 337	n:4600000
Cons ci ratio: 7.629992e-02	ci left: 5.515935e-04	ci right 5.955608e-04	k: 2637	n:4600000
KS ci ratio: 1.130988e-01	ci left: 2.463185e-04	ci right 2.760556e-04	k: 1200	n:4600000
WT1   4600000 perm   9182 sec   (501 perm/sec)   p_kst 2.608696e-04   p_cons 5.732609e-04   p_joint 7.326087e-05

Joint ci ratio: 2.128973e-01	ci left: 6.571018e-05	ci right 8.156677e-05	k: 338	n:4610000
Cons ci ratio: 7.618447e-02	ci left: 5.520993e-04	ci right 5.960374e-04	k: 2645	n:4610000
KS ci ratio: 1.130988e-01	ci left: 2.457842e-04	ci right 2.754568e-04	k: 1200	n:4610000
WT1   4610000 perm   9220 sec   (500 perm/sec)   p_kst 2.603037e-04   p_cons 5.737527e-04   p_joint 7.331887e-05

Joint ci ratio: 2.125840e-01	ci left: 6.577287e-05	ci right 8.161819e-05	k: 339	n:4620000
Cons ci ratio: 7.614134e-02	ci left: 5.515412e-04	ci right 5.954090e-04	k: 2648	n:4620000
KS ci ratio: 1.130517e-01	ci left: 2.454625e-04	ci right 2.750832e-04	k: 1201	n:4620000
WT1   4620000 perm   9257 sec   (499 perm/sec)   p_kst 2.599567e-04   p_cons 5.731602e-04   p_joint 7.337662e-05

Joint ci ratio: 2.119615e-01	ci left: 6.603981e-05	ci right 8.189680e-05	k: 341	n:4630000
Cons ci ratio: 7.604092e-02	ci left: 5.518331e-04	ci right 5.956636e-04	k: 2655	n:4630000
KS ci ratio: 1.130048e-01	ci left: 2.451422e-04	ci right 2.747111e-04	k: 1202	n:4630000
WT1   4630000 perm   9299 sec   (498 perm/sec)   p_kst 2.596112e-04   p_cons 5.734341e-04   p_joint 7.365011e-05

Joint ci ratio: 2.119615e-01	ci left: 6.589748e-05	ci right 8.172030e-05	k: 341	n:4640000
Cons ci ratio: 7.595518e-02	ci left: 5.519124e-04	ci right 5.956975e-04	k: 2661	n:4640000
KS ci ratio: 1.129110e-01	ci left: 2.450327e-04	ci right 2.745623e-04	k: 1204	n:4640000
WT1   4640000 perm   9336 sec   (497 perm/sec)   p_kst 2.594828e-04   p_cons 5.734914e-04   p_joint 7.349138e-05

Joint ci ratio: 2.107326e-01	ci left: 6.657046e-05	ci right 8.245023e-05	k: 345	n:4650000
Cons ci ratio: 7.586972e-02	ci left: 5.519913e-04	ci right 5.957313e-04	k: 2667	n:4650000
KS ci ratio: 1.126774e-01	ci left: 2.455507e-04	ci right 2.750774e-04	k: 1209	n:4650000
WT1   4650000 perm   9374 sec   (496 perm/sec)   p_kst 2.600000e-04   p_cons 5.735484e-04   p_joint 7.419355e-05

Joint ci ratio: 2.101262e-01	ci left: 6.683417e-05	ci right 8.272507e-05	k: 347	n:4660000
Cons ci ratio: 7.578455e-02	ci left: 5.520699e-04	ci right 5.957649e-04	k: 2673	n:4660000
KS ci ratio: 1.125844e-01	ci left: 2.454409e-04	ci right 2.749284e-04	k: 1211	n:4660000
WT1   4660000 perm   9413 sec   (495 perm/sec)   p_kst 2.598712e-04   p_cons 5.736052e-04   p_joint 7.446352e-05

Joint ci ratio: 2.098249e-01	ci left: 6.689393e-05	ci right 8.277330e-05	k: 348	n:4670000
Cons ci ratio: 7.565731e-02	ci left: 5.527784e-04	ci right 5.964528e-04	k: 2682	n:4670000
KS ci ratio: 1.123529e-01	ci left: 2.459559e-04	ci right 2.754404e-04	k: 1216	n:4670000
WT1   4670000 perm   9450 sec   (494 perm/sec)   p_kst 2.603854e-04   p_cons 5.743041e-04   p_joint 7.451820e-05

Joint ci ratio: 2.098249e-01	ci left: 6.675100e-05	ci right 8.259643e-05	k: 348	n:4680000
Cons ci ratio: 7.555880e-02	ci left: 5.530647e-04	ci right 5.967023e-04	k: 2689	n:4680000
KS ci ratio: 1.123067e-01	ci left: 2.456380e-04	ci right 2.750716e-04	k: 1217	n:4680000
WT1   4680000 perm   9487 sec   (493 perm/sec)   p_kst 2.600427e-04   p_cons 5.745726e-04   p_joint 7.435897e-05

Joint ci ratio: 2.119616e-01	ci left: 6.519495e-05	ci right 8.084908e-05	k: 341	n:4690000
Cons ci ratio: 7.547467e-02	ci left: 5.531407e-04	ci right 5.967335e-04	k: 2695	n:4690000
KS ci ratio: 1.122607e-01	ci left: 2.453215e-04	ci right 2.747043e-04	k: 1218	n:4690000
WT1   4690000 perm   9525 sec   (492 perm/sec)   p_kst 2.597015e-04   p_cons 5.746269e-04   p_joint 7.270789e-05

Joint ci ratio: 2.116524e-01	ci left: 6.525772e-05	ci right 8.090110e-05	k: 342	n:4700000
Cons ci ratio: 7.536292e-02	ci left: 5.536338e-04	ci right 5.971981e-04	k: 2703	n:4700000
KS ci ratio: 1.121687e-01	ci left: 2.452131e-04	ci right 2.745573e-04	k: 1220	n:4700000
WT1   4700000 perm   9563 sec   (491 perm/sec)   p_kst 2.595745e-04   p_cons 5.751064e-04   p_joint 7.276596e-05

Joint ci ratio: 2.113445e-01	ci left: 6.532024e-05	ci right 8.095288e-05	k: 343	n:4710000
Cons ci ratio: 7.534903e-02	ci left: 5.526667e-04	ci right 5.961465e-04	k: 2704	n:4710000
KS ci ratio: 1.120312e-01	ci left: 2.453116e-04	ci right 2.746291e-04	k: 1223	n:4710000
WT1   4710000 perm   9601 sec   (491 perm/sec)   p_kst 2.596603e-04   p_cons 5.740977e-04   p_joint 7.282378e-05

Joint ci ratio: 2.113445e-01	ci left: 6.518185e-05	ci right 8.078137e-05	k: 343	n:4720000
Cons ci ratio: 7.522396e-02	ci left: 5.533666e-04	ci right 5.968261e-04	k: 2713	n:4720000
KS ci ratio: 1.118030e-01	ci left: 2.458215e-04	ci right 2.751363e-04	k: 1228	n:4720000
WT1   4720000 perm   9639 sec   (490 perm/sec)   p_kst 2.601695e-04   p_cons 5.747881e-04   p_joint 7.266949e-05

Joint ci ratio: 2.113445e-01	ci left: 6.504404e-05	ci right 8.061058e-05	k: 343	n:4730000
Cons ci ratio: 7.516860e-02	ci left: 5.530265e-04	ci right 5.964259e-04	k: 2717	n:4730000
KS ci ratio: 1.117122e-01	ci left: 2.457128e-04	ci right 2.749892e-04	k: 1230	n:4730000
WT1   4730000 perm   9677 sec   (489 perm/sec)   p_kst 2.600423e-04   p_cons 5.744186e-04   p_joint 7.251586e-05

Joint ci ratio: 2.110380e-01	ci left: 6.510663e-05	ci right 8.066263e-05	k: 344	n:4740000
Cons ci ratio: 7.511337e-02	ci left: 5.526878e-04	ci right 5.960273e-04	k: 2721	n:4740000
KS ci ratio: 1.116215e-01	ci left: 2.456046e-04	ci right 2.748428e-04	k: 1232	n:4740000
WT1   4740000 perm   9714 sec   (488 perm/sec)   p_kst 2.599156e-04   p_cons 5.740506e-04   p_joint 7.257384e-05

Joint ci ratio: 2.104289e-01	ci left: 6.536840e-05	ci right 8.093605e-05	k: 346	n:4750000
Cons ci ratio: 7.503072e-02	ci left: 5.527637e-04	ci right 5.960594e-04	k: 2727	n:4750000
KS ci ratio: 1.115311e-01	ci left: 2.454968e-04	ci right 2.746970e-04	k: 1234	n:4750000
WT1   4750000 perm   9753 sec   (487 perm/sec)   p_kst 2.597895e-04   p_cons 5.741053e-04   p_joint 7.284211e-05

Joint ci ratio: 2.101264e-01	ci left: 6.543009e-05	ci right 8.098715e-05	k: 347	n:4760000
Cons ci ratio: 7.496206e-02	ci left: 5.526331e-04	ci right 5.958773e-04	k: 2732	n:4760000
KS ci ratio: 1.113060e-01	ci left: 2.460022e-04	ci right 2.751996e-04	k: 1239	n:4760000
WT1   4760000 perm   9793 sec   (486 perm/sec)   p_kst 2.602941e-04   p_cons 5.739496e-04   p_joint 7.289916e-05

Joint ci ratio: 2.098251e-01	ci left: 6.549154e-05	ci right 8.103802e-05	k: 348	n:4770000
Cons ci ratio: 7.486623e-02	ci left: 5.529146e-04	ci right 5.961231e-04	k: 2739	n:4770000
KS ci ratio: 1.112164e-01	ci left: 2.458941e-04	ci right 2.750536e-04	k: 1241	n:4770000
WT1   4770000 perm   9831 sec   (485 perm/sec)   p_kst 2.601677e-04   p_cons 5.742138e-04   p_joint 7.295597e-05

Joint ci ratio: 2.089290e-01	ci left: 6.594924e-05	ci right 8.152895e-05	k: 351	n:4780000
Cons ci ratio: 7.472995e-02	ci left: 5.538108e-04	ci right 5.970071e-04	k: 2749	n:4780000
KS ci ratio: 1.110823e-01	ci left: 2.459899e-04	ci right 2.751232e-04	k: 1244	n:4780000
WT1   4780000 perm   9871 sec   (484 perm/sec)   p_kst 2.602510e-04   p_cons 5.751046e-04   p_joint 7.343096e-05

Joint ci ratio: 2.089290e-01	ci left: 6.581156e-05	ci right 8.135875e-05	k: 351	n:4790000
Cons ci ratio: 7.460794e-02	ci left: 5.544985e-04	ci right 5.976747e-04	k: 2758	n:4790000
KS ci ratio: 1.109932e-01	ci left: 2.458823e-04	ci right 2.749780e-04	k: 1246	n:4790000
WT1   4790000 perm   9910 sec   (483 perm/sec)   p_kst 2.601253e-04   p_cons 5.757829e-04   p_joint 7.327766e-05

Joint ci ratio: 2.086329e-01	ci left: 6.587189e-05	ci right 8.140846e-05	k: 352	n:4800000
Cons ci ratio: 7.458094e-02	ci left: 5.537521e-04	ci right 5.968540e-04	k: 2760	n:4800000
KS ci ratio: 1.108156e-01	ci left: 2.461802e-04	ci right 2.752615e-04	k: 1250	n:4800000
WT1   4800000 perm   9949 sec   (482 perm/sec)   p_kst 2.604167e-04   p_cons 5.750000e-04   p_joint 7.333333e-05

Joint ci ratio: 2.083380e-01	ci left: 6.593199e-05	ci right 8.145795e-05	k: 353	n:4810000
Cons ci ratio: 7.445966e-02	ci left: 5.544371e-04	ci right 5.975191e-04	k: 2769	n:4810000
KS ci ratio: 1.107713e-01	ci left: 2.458705e-04	ci right 2.749029e-04	k: 1251	n:4810000
WT1   4810000 perm   9988 sec   (482 perm/sec)   p_kst 2.600832e-04   p_cons 5.756757e-04   p_joint 7.338877e-05

Joint ci ratio: 2.077519e-01	ci left: 6.618852e-05	ci right 8.172547e-05	k: 355	n:4820000
Cons ci ratio: 7.437915e-02	ci left: 5.545085e-04	ci right 5.975474e-04	k: 2775	n:4820000
KS ci ratio: 1.107271e-01	ci left: 2.455622e-04	ci right 2.745458e-04	k: 1252	n:4820000
WT1   4820000 perm   10028 sec   (481 perm/sec)   p_kst 2.597510e-04   p_cons 5.757261e-04   p_joint 7.365145e-05

Joint ci ratio: 2.074607e-01	ci left: 6.624776e-05	ci right 8.177406e-05	k: 356	n:4830000
Cons ci ratio: 7.425884e-02	ci left: 5.551892e-04	ci right 5.982082e-04	k: 2784	n:4830000
KS ci ratio: 1.106830e-01	ci left: 2.452551e-04	ci right 2.741902e-04	k: 1253	n:4830000
WT1   4830000 perm   10067 sec   (480 perm/sec)   p_kst 2.594203e-04   p_cons 5.763975e-04   p_joint 7.370600e-05

Joint ci ratio: 2.074607e-01	ci left: 6.611089e-05	ci right 8.160510e-05	k: 356	n:4840000
Cons ci ratio: 7.416569e-02	ci left: 5.554615e-04	ci right 5.984454e-04	k: 2791	n:4840000
KS ci ratio: 1.105948e-01	ci left: 2.451501e-04	ci right 2.740483e-04	k: 1255	n:4840000
WT1   4840000 perm   10107 sec   (479 perm/sec)   p_kst 2.592975e-04   p_cons 5.766529e-04   p_joint 7.355372e-05

Joint ci ratio: 2.068820e-01	ci left: 6.636556e-05	ci right 8.187058e-05	k: 358	n:4850000
Cons ci ratio: 7.407288e-02	ci left: 5.557328e-04	ci right 5.986815e-04	k: 2798	n:4850000
KS ci ratio: 1.104630e-01	ci left: 2.452461e-04	ci right 2.741189e-04	k: 1258	n:4850000
WT1   4850000 perm   10147 sec   (478 perm/sec)   p_kst 2.593814e-04   p_cons 5.769072e-04   p_joint 7.381443e-05

Joint ci ratio: 2.068820e-01	ci left: 6.622900e-05	ci right 8.170212e-05	k: 358	n:4860000
Cons ci ratio: 7.402002e-02	ci left: 5.553971e-04	ci right 5.982879e-04	k: 2802	n:4860000
KS ci ratio: 1.102443e-01	ci left: 2.457419e-04	ci right 2.746121e-04	k: 1263	n:4860000
WT1   4860000 perm   10187 sec   (477 perm/sec)   p_kst 2.598765e-04   p_cons 5.765432e-04   p_joint 7.366255e-05

Joint ci ratio: 2.068820e-01	ci left: 6.609301e-05	ci right 8.153436e-05	k: 358	n:4870000
Cons ci ratio: 7.399366e-02	ci left: 5.546598e-04	ci right 5.974777e-04	k: 2804	n:4870000
KS ci ratio: 1.101572e-01	ci left: 2.456367e-04	ci right 2.744702e-04	k: 1265	n:4870000
WT1   4870000 perm   10227 sec   (476 perm/sec)   p_kst 2.597536e-04   p_cons 5.757700e-04   p_joint 7.351129e-05

Joint ci ratio: 2.065945e-01	ci left: 6.615188e-05	ci right 8.158279e-05	k: 359	n:4880000
Cons ci ratio: 7.394097e-02	ci left: 5.543277e-04	ci right 5.970882e-04	k: 2808	n:4880000
KS ci ratio: 1.100269e-01	ci left: 2.457311e-04	ci right 2.745394e-04	k: 1268	n:4880000
WT1   4880000 perm   10267 sec   (475 perm/sec)   p_kst 2.598361e-04   p_cons 5.754098e-04   p_joint 7.356557e-05

Joint ci ratio: 2.063082e-01	ci left: 6.621053e-05	ci right 8.163101e-05	k: 360	n:4890000
Cons ci ratio: 7.390153e-02	ci left: 5.537962e-04	ci right 5.964920e-04	k: 2811	n:4890000
KS ci ratio: 1.098539e-01	ci left: 2.460241e-04	ci right 2.748184e-04	k: 1272	n:4890000
WT1   4890000 perm   10307 sec   (474 perm/sec)   p_kst 2.601227e-04   p_cons 5.748466e-04   p_joint 7.361963e-05

Joint ci ratio: 2.068821e-01	ci left: 6.568836e-05	ci right 8.103517e-05	k: 358	n:4900000
Cons ci ratio: 7.383593e-02	ci left: 5.536676e-04	ci right 5.963139e-04	k: 2816	n:4900000
KS ci ratio: 1.098107e-01	ci left: 2.457205e-04	ci right 2.744673e-04	k: 1273	n:4900000
WT1   4900000 perm   10347 sec   (474 perm/sec)   p_kst 2.597959e-04   p_cons 5.746939e-04   p_joint 7.306122e-05

Joint ci ratio: 2.068821e-01	ci left: 6.555457e-05	ci right 8.087013e-05	k: 358	n:4910000
Cons ci ratio: 7.377049e-02	ci left: 5.535395e-04	ci right 5.961366e-04	k: 2821	n:4910000
KS ci ratio: 1.095959e-01	ci left: 2.462104e-04	ci right 2.749545e-04	k: 1278	n:4910000
WT1   4910000 perm   10388 sec   (473 perm/sec)   p_kst 2.602851e-04   p_cons 5.745418e-04   p_joint 7.291242e-05

Joint ci ratio: 2.065946e-01	ci left: 6.561406e-05	ci right 8.091952e-05	k: 359	n:4920000
Cons ci ratio: 7.370523e-02	ci left: 5.534119e-04	ci right 5.959599e-04	k: 2826	n:4920000
KS ci ratio: 1.093822e-01	ci left: 2.466985e-04	ci right 2.754398e-04	k: 1283	n:4920000
WT1   4920000 perm   10429 sec   (472 perm/sec)   p_kst 2.607724e-04   p_cons 5.743902e-04   p_joint 7.296748e-05

Joint ci ratio: 2.063082e-01	ci left: 6.567332e-05	ci right 8.096869e-05	k: 360	n:4930000
Cons ci ratio: 7.365316e-02	ci left: 5.530858e-04	ci right 5.955774e-04	k: 2830	n:4930000
KS ci ratio: 1.092122e-01	ci left: 2.469872e-04	ci right 2.757146e-04	k: 1287	n:4930000
WT1   4930000 perm   10469 sec   (471 perm/sec)   p_kst 2.610548e-04   p_cons 5.740365e-04   p_joint 7.302231e-05

Joint ci ratio: 2.116527e-01	ci left: 6.208729e-05	ci right 7.697070e-05	k: 342	n:4940000
Cons ci ratio: 7.357523e-02	ci left: 5.531584e-04	ci right 5.956087e-04	k: 2836	n:4940000
KS ci ratio: 1.092123e-01	ci left: 2.464873e-04	ci right 2.751565e-04	k: 1287	n:4940000
WT1   4940000 perm   10510 sec   (470 perm/sec)   p_kst 2.605263e-04   p_cons 5.740891e-04   p_joint 6.923077e-05

Joint ci ratio: 2.113449e-01	ci left: 6.215318e-05	ci right 7.702791e-05	k: 343	n:4950000
Cons ci ratio: 7.351048e-02	ci left: 5.530324e-04	ci right 5.954341e-04	k: 2841	n:4950000
KS ci ratio: 1.091276e-01	ci left: 2.463823e-04	ci right 2.750157e-04	k: 1289	n:4950000
WT1   4950000 perm   10551 sec   (469 perm/sec)   p_kst 2.604040e-04   p_cons 5.739394e-04   p_joint 6.929293e-05

Joint ci ratio: 2.113449e-01	ci left: 6.202787e-05	ci right 7.687261e-05	k: 343	n:4960000
Cons ci ratio: 7.343301e-02	ci left: 5.531049e-04	ci right 5.954655e-04	k: 2847	n:4960000
KS ci ratio: 1.090431e-01	ci left: 2.462778e-04	ci right 2.748754e-04	k: 1291	n:4960000
WT1   4960000 perm   10591 sec   (468 perm/sec)   p_kst 2.602823e-04   p_cons 5.739919e-04   p_joint 6.915323e-05

Joint ci ratio: 2.113449e-01	ci left: 6.190307e-05	ci right 7.671793e-05	k: 343	n:4970000
Cons ci ratio: 7.335577e-02	ci left: 5.531771e-04	ci right 5.954968e-04	k: 2853	n:4970000
KS ci ratio: 1.089588e-01	ci left: 2.461737e-04	ci right 2.747357e-04	k: 1293	n:4970000
WT1   4970000 perm   10632 sec   (467 perm/sec)   p_kst 2.601610e-04   p_cons 5.740443e-04   p_joint 6.901408e-05

Joint ci ratio: 2.113449e-01	ci left: 6.177877e-05	ci right 7.656388e-05	k: 343	n:4980000
Cons ci ratio: 7.326597e-02	ci left: 5.534462e-04	ci right 5.957324e-04	k: 2860	n:4980000
KS ci ratio: 1.089167e-01	ci left: 2.458747e-04	ci right 2.743903e-04	k: 1294	n:4980000
WT1   4980000 perm   10673 sec   (467 perm/sec)   p_kst 2.598394e-04   p_cons 5.742972e-04   p_joint 6.887550e-05

Joint ci ratio: 2.110384e-01	ci left: 6.184476e-05	ci right 7.662143e-05	k: 344	n:4990000
Cons ci ratio: 7.318926e-02	ci left: 5.535175e-04	ci right 5.957629e-04	k: 2866	n:4990000
KS ci ratio: 1.089168e-01	ci left: 2.453820e-04	ci right 2.738405e-04	k: 1294	n:4990000
WT1   4990000 perm   10714 sec   (466 perm/sec)   p_kst 2.593186e-04   p_cons 5.743487e-04   p_joint 6.893788e-05

Joint ci ratio: 2.171016e-01	ci left: 5.812474e-05	ci right 7.246483e-05	k: 325	n:5000000
Cons ci ratio: 7.860089e-02	ci left: 4.776539e-04	ci right 5.169283e-04	k: 2485	n:5000000
KS ci ratio: 1.088748e-01	ci left: 2.450858e-04	ci right 2.734982e-04	k: 1295	n:5000000
WT1   5000000 perm   10754 sec   (465 perm/sec)   p_kst 2.590000e-04   p_cons 4.970000e-04   p_joint 6.500000e-05

Outputting figure to mutsig2_images.part000000000191/WT1.8_1594_5000000_0.000259_0.000497_6.5e-05.png
                gene_name: WT1
               theta_stop: 0.22 
                    nperm: 5000000 
                     p_ks: 0.00026 
        ci_ks_bounds_left: 0.00025 
       ci_ks_bounds_right: 0.00027 
                   p_cons: 0.00050 
      ci_cons_bounds_left: 0.00048 
     ci_cons_bounds_right: 0.00052 
                  p_joint: 6.50e-05 
     ci_joint_bounds_left: 5.81e-05 
    ci_joint_bounds_right: 7.25e-05 

Current progress: 18 percent done.
XKR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
XKR6   10000 perm   2 sec   (5252 perm/sec)   p_kst 1.359000e-01   p_cons 2.103000e-01   p_joint 1.180000e-01

Joint ci ratio: 6.867025e-02	ci left: 1.352679e-01	ci right 1.449369e-01	k: 2801	n:20000
Cons ci ratio: 5.426046e-02	ci left: 2.013038e-01	ci right 2.125815e-01	k: 4138	n:20000
KS ci ratio: 6.857068e-02	ci left: 1.356129e-01	ci right 1.452919e-01	k: 2808	n:20000
XKR6   20000 perm   4 sec   (4716 perm/sec)   p_kst 1.404000e-01   p_cons 2.069000e-01   p_joint 1.400500e-01

Outputting figure to mutsig2_images.part000000000191/XKR6.8_1938_20000_0.1404_0.2069_0.14005.png
                gene_name: XKR6
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 20 percent done.
XKR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
KS ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
XKR7   10000 perm   2 sec   (5617 perm/sec)   p_kst 2.087000e-01   p_cons 3.889000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000191/XKR7.8_1752_10000_0.2087_0.3889_0.3088.png
                gene_name: XKR7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 21 percent done.
WWC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
Cons ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
KS ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
WWC3   10000 perm   2 sec   (4942 perm/sec)   p_kst 5.056000e-01   p_cons 1.786000e-01   p_joint 3.429000e-01

Outputting figure to mutsig2_images.part000000000191/WWC3.7_3367_10000_0.5056_0.1786_0.3429.png
                gene_name: WWC3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 23 percent done.
WNT7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
WNT7A   10000 perm   2 sec   (6010 perm/sec)   p_kst 7.220000e-02   p_cons 2.137000e-01   p_joint 1.184000e-01

Joint ci ratio: 8.689668e-02	ci left: 8.832299e-02	ci right 9.639598e-02	k: 1846	n:20000
Cons ci ratio: 5.669738e-02	ci left: 1.874020e-01	ci right 1.983874e-01	k: 3857	n:20000
KS ci ratio: 9.980974e-02	ci left: 6.801542e-02	ci right 7.520972e-02	k: 1431	n:20000
WNT7A   20000 perm   4 sec   (5263 perm/sec)   p_kst 7.155000e-02   p_cons 1.928500e-01   p_joint 9.230000e-02

Outputting figure to mutsig2_images.part000000000191/WNT7A.6_1066_20000_0.07155_0.19285_0.0923.png
                gene_name: WNT7A
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 25 percent done.
WNT9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
WNT9B   10000 perm   2 sec   (5981 perm/sec)   p_kst 6.392000e-01   p_cons 5.436000e-01   p_joint 7.911000e-01

Outputting figure to mutsig2_images.part000000000191/WNT9B.5_1090_10000_0.6392_0.5436_0.7911.png
                gene_name: WNT9B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 27 percent done.
WSCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
Cons ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
KS ci ratio: 3.832596e-02	ci left: 5.013506e-01	ci right 5.210429e-01	k: 5112	n:10000
WSCD1   10000 perm   2 sec   (5442 perm/sec)   p_kst 5.112000e-01   p_cons 2.980000e-02   p_joint 6.080000e-02

Joint ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
Cons ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
KS ci ratio: 2.696188e-02	ci left: 5.068465e-01	ci right 5.207495e-01	k: 10276	n:20000
WSCD1   20000 perm   4 sec   (4859 perm/sec)   p_kst 5.138000e-01   p_cons 3.105000e-02   p_joint 9.130000e-02

Joint ci ratio: 5.893896e-02	ci left: 1.246997e-01	ci right 1.323057e-01	k: 3854	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 2.196200e-02	ci left: 5.093267e-01	ci right 5.206704e-01	k: 15450	n:30000
WSCD1   30000 perm   6 sec   (4629 perm/sec)   p_kst 5.150000e-01   p_cons 3.020000e-02   p_joint 1.284667e-01

Joint ci ratio: 5.187405e-02	ci left: 1.216749e-01	ci right 1.281796e-01	k: 4996	n:40000
Cons ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
KS ci ratio: 1.906371e-02	ci left: 5.089386e-01	ci right 5.187594e-01	k: 20554	n:40000
WSCD1   40000 perm   9 sec   (4476 perm/sec)   p_kst 5.138500e-01   p_cons 3.030000e-02   p_joint 1.249000e-01

Joint ci ratio: 4.756334e-02	ci left: 1.167481e-01	ci right 1.224562e-01	k: 5979	n:50000
Cons ci ratio: 9.944430e-02	ci left: 2.863920e-02	ci right 3.165568e-02	k: 1506	n:50000
KS ci ratio: 1.706044e-02	ci left: 5.091883e-01	ci right 5.179701e-01	k: 25679	n:50000
WSCD1   50000 perm   12 sec   (4343 perm/sec)   p_kst 5.135800e-01   p_cons 3.012000e-02   p_joint 1.195800e-01

Outputting figure to mutsig2_images.part000000000191/WSCD1.5_1760_50000_0.51358_0.03012_0.11958.png
                gene_name: WSCD1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 29 percent done.
WWC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
Cons ci ratio: 2.965300e-02	ci left: 6.264811e-01	ci right 6.454396e-01	k: 6360	n:10000
KS ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
WWC2   10000 perm   2 sec   (4992 perm/sec)   p_kst 5.737000e-01   p_cons 6.360000e-01   p_joint 7.535000e-01

Outputting figure to mutsig2_images.part000000000191/WWC2.5_3671_10000_0.5737_0.636_0.7535.png
                gene_name: WWC2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 30 percent done.
XCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
Cons ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
KS ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
XCL2   10000 perm   2 sec   (5982 perm/sec)   p_kst 5.690000e-02   p_cons 6.699000e-01   p_joint 1.256000e-01

Joint ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
Cons ci ratio: 1.939971e-02	ci left: 6.646398e-01	ci right 6.777104e-01	k: 13424	n:20000
KS ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
XCL2   20000 perm   4 sec   (5268 perm/sec)   p_kst 5.570000e-02   p_cons 6.712000e-01   p_joint 1.123000e-01

Joint ci ratio: 5.518677e-02	ci left: 1.399792e-01	ci right 1.479566e-01	k: 4318	n:30000
Cons ci ratio: 1.581009e-02	ci left: 6.666877e-01	ci right 6.773456e-01	k: 20161	n:30000
KS ci ratio: 9.441802e-02	ci left: 5.176232e-02	ci right 5.692442e-02	k: 1629	n:30000
XCL2   30000 perm   6 sec   (5020 perm/sec)   p_kst 5.430000e-02   p_cons 6.720333e-01   p_joint 1.439333e-01

Outputting figure to mutsig2_images.part000000000191/XCL2.5_357_30000_0.0543_0.67203_0.14393.png
                gene_name: XCL2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
XIAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
XIAP   10000 perm   2 sec   (6132 perm/sec)   p_kst 9.223000e-01   p_cons 3.343000e-01   p_joint 8.899000e-01

Outputting figure to mutsig2_images.part000000000191/XIAP.5_1518_10000_0.9223_0.3343_0.8899.png
                gene_name: XIAP
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 34 percent done.
WHSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
Cons ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
WHSC1   10000 perm   2 sec   (5132 perm/sec)   p_kst 8.355000e-01   p_cons 1.330000e-01   p_joint 4.905000e-01

Joint ci ratio: 3.233406e-02	ci left: 4.166885e-01	ci right 4.304337e-01	k: 8471	n:20000
Cons ci ratio: 7.095440e-02	ci left: 1.276823e-01	ci right 1.371249e-01	k: 2647	n:20000
KS ci ratio: 1.227528e-02	ci left: 8.308452e-01	ci right 8.411569e-01	k: 16721	n:20000
WHSC1   20000 perm   4 sec   (4542 perm/sec)   p_kst 8.360500e-01   p_cons 1.323500e-01   p_joint 4.235500e-01

Outputting figure to mutsig2_images.part000000000191/WHSC1.4_4258_20000_0.83605_0.13235_0.42355.png
                gene_name: WHSC1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 36 percent done.
WIPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
WIPI1   10000 perm   1 sec   (6705 perm/sec)   p_kst 5.816000e-01   p_cons 4.369000e-01   p_joint 6.236000e-01

Outputting figure to mutsig2_images.part000000000191/WIPI1.4_1393_10000_0.5816_0.4369_0.6236.png
                gene_name: WIPI1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 38 percent done.
WIPI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
Cons ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
KS ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
WIPI2   10000 perm   2 sec   (5904 perm/sec)   p_kst 4.111000e-01   p_cons 1.253000e-01   p_joint 3.713000e-01

Joint ci ratio: 4.152340e-02	ci left: 3.018038e-01	ci right 3.146519e-01	k: 6164	n:20000
Cons ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
KS ci ratio: 3.269420e-02	ci left: 4.113013e-01	ci right 4.250225e-01	k: 8363	n:20000
WIPI2   20000 perm   4 sec   (5176 perm/sec)   p_kst 4.181500e-01   p_cons 1.237500e-01   p_joint 3.082000e-01

Outputting figure to mutsig2_images.part000000000191/WIPI2.4_1451_20000_0.41815_0.12375_0.3082.png
                gene_name: WIPI2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 39 percent done.
WISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
KS ci ratio: 1.470375e-02	ci left: 8.700961e-01	ci right 8.830836e-01	k: 8767	n:10000
WISP1   10000 perm   2 sec   (5951 perm/sec)   p_kst 8.767000e-01   p_cons 2.663000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000191/WISP1.4_1124_10000_0.8767_0.2663_0.7965.png
                gene_name: WISP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 41 percent done.
WNT10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
Cons ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
KS ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
WNT10A   10000 perm   2 sec   (5879 perm/sec)   p_kst 6.800000e-02   p_cons 8.939000e-01   p_joint 1.250000e-01

Joint ci ratio: 6.478008e-02	ci left: 1.497138e-01	ci right 1.597868e-01	k: 3094	n:20000
Cons ci ratio: 9.653706e-03	ci left: 8.874637e-01	ci right 8.961220e-01	k: 17837	n:20000
KS ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
WNT10A   20000 perm   4 sec   (5207 perm/sec)   p_kst 7.225000e-02   p_cons 8.918500e-01   p_joint 1.547000e-01

Outputting figure to mutsig2_images.part000000000191/WNT10A.4_1270_20000_0.07225_0.89185_0.1547.png
                gene_name: WNT10A
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 43 percent done.
WNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.894413e-02	ci left: 4.933506e-01	ci right 5.130475e-01	k: 5032	n:10000
Cons ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
WNT2   10000 perm   2 sec   (6033 perm/sec)   p_kst 3.032000e-01   p_cons 4.971000e-01   p_joint 5.032000e-01

Outputting figure to mutsig2_images.part000000000191/WNT2.4_1103_10000_0.3032_0.4971_0.5032.png
                gene_name: WNT2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 45 percent done.
WNT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
Cons ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
KS ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
WNT3A   10000 perm   2 sec   (6053 perm/sec)   p_kst 8.740000e-02   p_cons 9.640000e-01   p_joint 1.936000e-01

Joint ci ratio: 5.250553e-02	ci left: 2.121950e-01	ci right 2.236871e-01	k: 4358	n:20000
Cons ci ratio: 5.443974e-03	ci left: 9.601874e-01	ci right 9.654770e-01	k: 19258	n:20000
KS ci ratio: 8.510625e-02	ci left: 9.180406e-02	ci right 1.000139e-01	k: 1917	n:20000
WNT3A   20000 perm   4 sec   (5304 perm/sec)   p_kst 9.585000e-02   p_cons 9.629000e-01   p_joint 2.179000e-01

Outputting figure to mutsig2_images.part000000000191/WNT3A.4_1075_20000_0.09585_0.9629_0.2179.png
                gene_name: WNT3A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
WTAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
WTAP   10000 perm   2 sec   (6312 perm/sec)   p_kst 7.942000e-01   p_cons 1.092000e-01   p_joint 3.732000e-01

Joint ci ratio: 3.878765e-02	ci left: 3.314432e-01	ci right 3.446039e-01	k: 6760	n:20000
Cons ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
KS ci ratio: 1.408869e-02	ci left: 7.890344e-01	ci right 8.002798e-01	k: 15894	n:20000
WTAP   20000 perm   4 sec   (5542 perm/sec)   p_kst 7.947000e-01   p_cons 1.055500e-01   p_joint 3.380000e-01

Outputting figure to mutsig2_images.part000000000191/WTAP.4_1223_20000_0.7947_0.10555_0.338.png
                gene_name: WTAP
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
WWC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
Cons ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
WWC1   10000 perm   2 sec   (5061 perm/sec)   p_kst 4.341000e-01   p_cons 8.602000e-01   p_joint 6.855000e-01

Outputting figure to mutsig2_images.part000000000191/WWC1.4_3452_10000_0.4341_0.8602_0.6855.png
                gene_name: WWC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 50 percent done.
WWTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
WWTR1   10000 perm   2 sec   (5814 perm/sec)   p_kst 6.218000e-01   p_cons 4.090000e-02   p_joint 1.803000e-01

Joint ci ratio: 5.947352e-02	ci left: 1.731161e-01	ci right 1.837775e-01	k: 3568	n:20000
Cons ci ratio: 1.322969e-01	ci left: 3.926179e-02	ci right 4.487233e-02	k: 840	n:20000
KS ci ratio: 2.197649e-02	ci left: 6.072118e-01	ci right 6.207550e-01	k: 12280	n:20000
WWTR1   20000 perm   4 sec   (5125 perm/sec)   p_kst 6.140000e-01   p_cons 4.200000e-02   p_joint 1.784000e-01

Joint ci ratio: 4.777179e-02	ci left: 1.789029e-01	ci right 1.876919e-01	k: 5498	n:30000
Cons ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
KS ci ratio: 1.797686e-02	ci left: 6.075947e-01	ci right 6.186500e-01	k: 18394	n:30000
WWTR1   30000 perm   6 sec   (4880 perm/sec)   p_kst 6.131333e-01   p_cons 4.083333e-02   p_joint 1.832667e-01

Joint ci ratio: 4.084731e-02	ci left: 1.833133e-01	ci right 1.909822e-01	k: 7485	n:40000
Cons ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
KS ci ratio: 1.559262e-02	ci left: 6.076050e-01	ci right 6.171787e-01	k: 24496	n:40000
WWTR1   40000 perm   8 sec   (4723 perm/sec)   p_kst 6.124000e-01   p_cons 4.130000e-02   p_joint 1.871250e-01

Outputting figure to mutsig2_images.part000000000191/WWTR1.4_1227_40000_0.6124_0.0413_0.18713.png
                gene_name: WWTR1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 52 percent done.
XKR4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
KS ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
XKR4   10000 perm   2 sec   (6042 perm/sec)   p_kst 7.725000e-01   p_cons 4.563000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/XKR4.3_1965_10000_0.7725_0.4563_1.png
                gene_name: XKR4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
WFIKKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
KS ci ratio: 2.376668e-02	ci left: 7.223943e-01	ci right 7.398709e-01	k: 7312	n:10000
WFIKKN2   10000 perm   2 sec   (5894 perm/sec)   p_kst 7.312000e-01   p_cons 8.027000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WFIKKN2.3_1739_10000_0.7312_0.8027_1.png
                gene_name: WFIKKN2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
WFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
Cons ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
KS ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
WFS1   10000 perm   2 sec   (5469 perm/sec)   p_kst 1.869000e-01   p_cons 6.000000e-02   p_joint 8.350000e-02

Joint ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
Cons ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
KS ci ratio: 5.715669e-02	ci left: 1.849296e-01	ci right 1.958606e-01	k: 3807	n:20000
WFS1   20000 perm   4 sec   (4820 perm/sec)   p_kst 1.903500e-01   p_cons 6.215000e-02   p_joint 6.650000e-02

Joint ci ratio: 7.946123e-02	ci left: 7.204409e-02	ci right 7.803852e-02	k: 2250	n:30000
Cons ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
KS ci ratio: 4.633310e-02	ci left: 1.881509e-01	ci right 1.971087e-01	k: 5778	n:30000
WFS1   30000 perm   7 sec   (4596 perm/sec)   p_kst 1.926000e-01   p_cons 6.263333e-02   p_joint 7.500000e-02

Outputting figure to mutsig2_images.part000000000191/WFS1.3_2701_30000_0.1926_0.062633_0.075.png
                gene_name: WFS1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 57 percent done.
WIPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
Cons ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
WIPF3   10000 perm   2 sec   (6082 perm/sec)   p_kst 5.160000e-02   p_cons 7.760000e-02   p_joint 5.570000e-02

Joint ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
Cons ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
KS ci ratio: 1.222419e-01	ci left: 4.590339e-02	ci right 5.192862e-02	k: 977	n:20000
WIPF3   20000 perm   4 sec   (5329 perm/sec)   p_kst 4.885000e-02   p_cons 7.635000e-02   p_joint 2.890000e-02

Joint ci ratio: 1.226391e-01	ci left: 3.091021e-02	ci right 3.498090e-02	k: 987	n:30000
Cons ci ratio: 7.887557e-02	ci left: 7.305854e-02	ci right 7.909053e-02	k: 2281	n:30000
KS ci ratio: 1.009741e-01	ci left: 4.541306e-02	ci right 5.027498e-02	k: 1434	n:30000
WIPF3   30000 perm   6 sec   (5072 perm/sec)   p_kst 4.780000e-02   p_cons 7.603333e-02   p_joint 3.290000e-02

Joint ci ratio: 1.114012e-01	ci left: 2.834996e-02	ci right 3.171872e-02	k: 1200	n:40000
Cons ci ratio: 6.779933e-02	ci left: 7.450416e-02	ci right 7.975742e-02	k: 3084	n:40000
KS ci ratio: 8.887877e-02	ci left: 4.431016e-02	ci right 4.845601e-02	k: 1854	n:40000
WIPF3   40000 perm   8 sec   (4887 perm/sec)   p_kst 4.635000e-02   p_cons 7.710000e-02   p_joint 3.000000e-02

Joint ci ratio: 9.784898e-02	ci left: 2.957621e-02	ci right 3.263855e-02	k: 1554	n:50000
Cons ci ratio: 6.105656e-02	ci left: 7.382992e-02	ci right 7.849943e-02	k: 3807	n:50000
KS ci ratio: 7.992594e-02	ci left: 4.406251e-02	ci right 4.775045e-02	k: 2294	n:50000
WIPF3   50000 perm   11 sec   (4746 perm/sec)   p_kst 4.588000e-02   p_cons 7.614000e-02   p_joint 3.108000e-02

Outputting figure to mutsig2_images.part000000000191/WIPF3.3_1480_50000_0.04588_0.07614_0.03108.png
                gene_name: WIPF3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 59 percent done.
WNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
Cons ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
KS ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
WNK2   10000 perm   2 sec   (4364 perm/sec)   p_kst 5.991000e-01   p_cons 3.403000e-01   p_joint 6.145000e-01

Outputting figure to mutsig2_images.part000000000191/WNK2.3_6770_10000_0.5991_0.3403_0.6145.png
                gene_name: WNK2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 61 percent done.
WNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
Cons ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
WNT1   10000 perm   2 sec   (6241 perm/sec)   p_kst 1.431000e-01   p_cons 2.684000e-01   p_joint 1.683000e-01

Outputting figure to mutsig2_images.part000000000191/WNT1.3_1129_10000_0.1431_0.2684_0.1683.png
                gene_name: WNT1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
WNT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
WNT5B   10000 perm   2 sec   (6146 perm/sec)   p_kst 9.097000e-01   p_cons 8.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT5B.3_1096_10000_0.9097_0.8176_1.png
                gene_name: WNT5B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
WNT8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
Cons ci ratio: 1.280331e-01	ci left: 8.018782e-02	ci right 9.125491e-02	k: 856	n:10000
KS ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
WNT8A   10000 perm   2 sec   (6413 perm/sec)   p_kst 3.082000e-01   p_cons 8.560000e-02   p_joint 3.712000e-01

Joint ci ratio: 4.932513e-02	ci left: 2.340446e-01	ci right 2.459311e-01	k: 4799	n:20000
Cons ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
KS ci ratio: 4.155750e-02	ci left: 3.014559e-01	ci right 3.143000e-01	k: 6157	n:20000
WNT8A   20000 perm   4 sec   (5566 perm/sec)   p_kst 3.078500e-01   p_cons 7.860000e-02   p_joint 2.399500e-01

Outputting figure to mutsig2_images.part000000000191/WNT8A.3_1080_20000_0.30785_0.0786_0.23995.png
                gene_name: WNT8A
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 66 percent done.
WWP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
WWP1   10000 perm   2 sec   (5658 perm/sec)   p_kst 2.144000e-01   p_cons 6.692000e-01   p_joint 2.144000e-01

Outputting figure to mutsig2_images.part000000000191/WWP1.3_2861_10000_0.2144_0.6692_0.2144.png
                gene_name: WWP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
WWP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
KS ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
WWP2   10000 perm   2 sec   (5604 perm/sec)   p_kst 5.132000e-01   p_cons 2.067000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WWP2.3_2709_10000_0.5132_0.2067_1.png
                gene_name: WWP2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
XCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
Cons ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
KS ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
XCL1   10000 perm   2 sec   (6663 perm/sec)   p_kst 2.120000e-01   p_cons 6.140000e-01   p_joint 5.025000e-01

Outputting figure to mutsig2_images.part000000000191/XCL1.3_357_10000_0.212_0.614_0.5025.png
                gene_name: XCL1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 71 percent done.
WFDC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
WFDC12   10000 perm   1 sec   (6957 perm/sec)   p_kst 9.417000e-01   p_cons 5.159000e-01   p_joint 6.517000e-01

Outputting figure to mutsig2_images.part000000000191/WFDC12.2_348_10000_0.9417_0.5159_0.6517.png
                gene_name: WFDC12
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 73 percent done.
WHSC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.936930e-03	ci left: 9.567051e-01	ci right 9.644236e-01	k: 9607	n:10000
Cons ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
WHSC1L1   10000 perm   2 sec   (5197 perm/sec)   p_kst 9.400000e-01   p_cons 8.879000e-01   p_joint 9.607000e-01

Outputting figure to mutsig2_images.part000000000191/WHSC1L1.2_4493_10000_0.94_0.8879_0.9607.png
                gene_name: WHSC1L1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 75 percent done.
WIBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
KS ci ratio: 5.028518e-02	ci left: 3.683836e-01	ci right 3.874876e-01	k: 3779	n:10000
WIBG   10000 perm   2 sec   (6500 perm/sec)   p_kst 3.779000e-01   p_cons 6.420000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WIBG.2_665_10000_0.3779_0.642_1.png
                gene_name: WIBG
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
WISP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
WISP3   10000 perm   2 sec   (6410 perm/sec)   p_kst 2.446000e-01   p_cons 8.010000e-02   p_joint 2.592000e-01

Joint ci ratio: 3.994215e-02	ci left: 3.185096e-01	ci right 3.315413e-01	k: 6500	n:20000
Cons ci ratio: 9.523102e-02	ci left: 7.436884e-02	ci right 8.185436e-02	k: 1561	n:20000
KS ci ratio: 4.883660e-02	ci left: 2.376636e-01	ci right 2.496111e-01	k: 4872	n:20000
WISP3   20000 perm   4 sec   (5575 perm/sec)   p_kst 2.436000e-01   p_cons 7.805000e-02   p_joint 3.250000e-01

Outputting figure to mutsig2_images.part000000000191/WISP3.2_1139_20000_0.2436_0.07805_0.325.png
                gene_name: WISP3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 79 percent done.
WLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
WLS   10000 perm   2 sec   (5991 perm/sec)   p_kst 2.941000e-01   p_cons 3.037000e-01   p_joint 8.715000e-01

Outputting figure to mutsig2_images.part000000000191/WLS.2_1800_10000_0.2941_0.3037_0.8715.png
                gene_name: WLS
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 80 percent done.
WNT10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
Cons ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
WNT10B   10000 perm   2 sec   (6636 perm/sec)   p_kst 6.850000e-02   p_cons 2.008000e-01   p_joint 5.200000e-02

Joint ci ratio: 1.175168e-01	ci left: 4.959502e-02	ci right 5.583583e-02	k: 1053	n:20000
Cons ci ratio: 5.720308e-02	ci left: 1.846823e-01	ci right 1.956079e-01	k: 3802	n:20000
KS ci ratio: 1.038504e-01	ci left: 6.303638e-02	ci right 6.999029e-02	k: 1329	n:20000
WNT10B   20000 perm   4 sec   (5678 perm/sec)   p_kst 6.645000e-02   p_cons 1.901000e-01   p_joint 5.265000e-02

Joint ci ratio: 4.935598e-02	ci left: 1.694281e-01	ci right 1.780352e-01	k: 5211	n:30000
Cons ci ratio: 4.659290e-02	ci left: 1.864331e-01	ci right 1.953601e-01	k: 5726	n:30000
KS ci ratio: 8.398520e-02	ci left: 6.484973e-02	ci right 7.056767e-02	k: 2030	n:30000
WNT10B   30000 perm   6 sec   (5303 perm/sec)   p_kst 6.766667e-02   p_cons 1.908667e-01   p_joint 1.737000e-01

Outputting figure to mutsig2_images.part000000000191/WNT10B.2_1186_30000_0.067667_0.19087_0.1737.png
                gene_name: WNT10B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 82 percent done.
WNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KS ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
WNT11   10000 perm   2 sec   (6455 perm/sec)   p_kst 8.084000e-01   p_cons 6.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT11.2_1085_10000_0.8084_0.6077_1.png
                gene_name: WNT11
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
WNT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
KS ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
WNT16   10000 perm   2 sec   (6368 perm/sec)   p_kst 2.398000e-01   p_cons 6.098000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT16.2_1183_10000_0.2398_0.6098_1.png
                gene_name: WNT16
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
WNT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.820875e-03	ci left: 9.578562e-01	ci right 9.654718e-01	k: 9618	n:10000
KS ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
WNT2B   10000 perm   2 sec   (6464 perm/sec)   p_kst 8.707000e-01   p_cons 9.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT2B.2_1329_10000_0.8707_0.9618_1.png
                gene_name: WNT2B
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
WNT7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.487993e-02	ci left: 8.674390e-01	ci right 8.805423e-01	k: 8741	n:10000
KS ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
WNT7B   10000 perm   2 sec   (6413 perm/sec)   p_kst 1.462000e-01   p_cons 8.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT7B.2_1066_10000_0.1462_0.8741_1.png
                gene_name: WNT7B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
WNT8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
Cons ci ratio: 1.075182e-02	ci left: 9.249261e-01	ci right 9.350217e-01	k: 9301	n:10000
KS ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
WNT8B   10000 perm   2 sec   (6498 perm/sec)   p_kst 3.953000e-01   p_cons 9.301000e-01   p_joint 9.501000e-01

Outputting figure to mutsig2_images.part000000000191/WNT8B.2_1080_10000_0.3953_0.9301_0.9501.png
                gene_name: WNT8B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
WNT9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
WNT9A   10000 perm   2 sec   (6505 perm/sec)   p_kst 5.724000e-01   p_cons 2.776000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000191/WNT9A.2_1114_10000_0.5724_0.2776_0.6558.png
                gene_name: WNT9A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 93 percent done.
WSB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
Cons ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
KS ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
WSB1   10000 perm   2 sec   (6404 perm/sec)   p_kst 3.240000e-02   p_cons 5.023000e-01   p_joint 4.710000e-02

Joint ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
Cons ci ratio: 2.769158e-02	ci left: 4.934958e-01	ci right 5.074040e-01	k: 10009	n:20000
KS ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
WSB1   20000 perm   4 sec   (5538 perm/sec)   p_kst 3.000000e-02   p_cons 5.004500e-01   p_joint 3.000000e-02

Joint ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
Cons ci ratio: 2.263402e-02	ci left: 4.942590e-01	ci right 5.056077e-01	k: 14998	n:30000
KS ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
WSB1   30000 perm   6 sec   (5251 perm/sec)   p_kst 2.936667e-02   p_cons 4.999333e-01   p_joint 2.936667e-02

Joint ci ratio: 1.119792e-01	ci left: 2.805811e-02	ci right 3.141062e-02	k: 1188	n:40000
Cons ci ratio: 2.034342e-02	ci left: 4.764675e-01	ci right 4.862852e-01	k: 19255	n:40000
KS ci ratio: 1.119792e-01	ci left: 2.805811e-02	ci right 3.141062e-02	k: 1188	n:40000
WSB1   40000 perm   8 sec   (5017 perm/sec)   p_kst 2.970000e-02   p_cons 4.813750e-01   p_joint 2.970000e-02

Joint ci ratio: 1.007264e-01	ci left: 2.791720e-02	ci right 3.089777e-02	k: 1469	n:50000
Cons ci ratio: 1.824018e-02	ci left: 4.757721e-01	ci right 4.845502e-01	k: 24008	n:50000
KS ci ratio: 1.007264e-01	ci left: 2.791720e-02	ci right 3.089777e-02	k: 1469	n:50000
WSB1   50000 perm   10 sec   (4861 perm/sec)   p_kst 2.938000e-02   p_cons 4.801600e-01   p_joint 2.938000e-02

Joint ci ratio: 9.107637e-02	ci left: 2.858429e-02	ci right 3.132810e-02	k: 1796	n:60000
Cons ci ratio: 1.662136e-02	ci left: 4.770448e-01	ci right 4.850571e-01	k: 28863	n:60000
KS ci ratio: 9.107637e-02	ci left: 2.858429e-02	ci right 3.132810e-02	k: 1796	n:60000
WSB1   60000 perm   13 sec   (4733 perm/sec)   p_kst 2.993333e-02   p_cons 4.810500e-01   p_joint 2.993333e-02

Outputting figure to mutsig2_images.part000000000191/WSB1.2_1302_60000_0.029933_0.48105_0.029933.png
                gene_name: WSB1
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 95 percent done.
WWOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
Cons ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
KS ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
WWOX   10000 perm   2 sec   (6305 perm/sec)   p_kst 6.282000e-01   p_cons 9.230000e-02   p_joint 1.330000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 2.107760e-02	ci left: 6.268784e-01	ci right 6.402827e-01	k: 12672	n:20000
WWOX   20000 perm   4 sec   (5509 perm/sec)   p_kst 6.336000e-01   p_cons 9.020000e-02   p_joint 1.613000e-01

Outputting figure to mutsig2_images.part000000000191/WWOX.2_1343_20000_0.6336_0.0902_0.1613.png
                gene_name: WWOX
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 96 percent done.
XAGE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
KS ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
XAGE5   10000 perm   1 sec   (7394 perm/sec)   p_kst 3.560000e-02   p_cons 3.848000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.491523e-02	ci left: 3.797931e-01	ci right 3.933399e-01	k: 7731	n:20000
KS ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
XAGE5   20000 perm   3 sec   (6250 perm/sec)   p_kst 3.455000e-02   p_cons 3.865500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 2.843611e-02	ci left: 3.822475e-01	ci right 3.933075e-01	k: 11633	n:30000
KS ci ratio: 1.176226e-01	ci left: 3.359645e-02	ci right 3.782741e-02	k: 1070	n:30000
XAGE5   30000 perm   5 sec   (5866 perm/sec)   p_kst 3.566667e-02   p_cons 3.877667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 2.465102e-02	ci left: 3.825220e-01	ci right 3.920944e-01	k: 15492	n:40000
KS ci ratio: 1.005930e-01	ci left: 3.473223e-02	ci right 3.843544e-02	k: 1462	n:40000
XAGE5   40000 perm   7 sec   (5546 perm/sec)   p_kst 3.655000e-02   p_cons 3.873000e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 2.197831e-02	ci left: 3.845437e-01	ci right 3.931092e-01	k: 19441	n:50000
KS ci ratio: 9.055963e-02	ci left: 3.448192e-02	ci right 3.777222e-02	k: 1805	n:50000
XAGE5   50000 perm   9 sec   (5387 perm/sec)   p_kst 3.610000e-02   p_cons 3.888200e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/XAGE5.2_343_50000_0.0361_0.38882_1.png
                gene_name: XAGE5
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
XKR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
Cons ci ratio: 1.444432e-02	ci left: 8.739813e-01	ci right 8.867962e-01	k: 8805	n:10000
KS ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
XKR3   10000 perm   2 sec   (6399 perm/sec)   p_kst 1.988000e-01   p_cons 8.805000e-01   p_joint 9.630000e-01

Outputting figure to mutsig2_images.part000000000191/XKR3.2_1392_10000_0.1988_0.8805_0.963.png
                gene_name: XKR3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000191
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 191 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 4422699: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000192> was used as the working directory.
Started at Wed Oct 24 18:10:49 2012
Results reported at Wed Oct 24 18:23:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000192.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000192.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 192  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000192.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    821.12 sec.
    Max Memory :      5244 MB
    Max Swap   :      7938 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
192
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 192
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 192: processing genes 17281 - 17370
Calculating significance of each gene.
Using projection method.
17281	XKR8	1
17282	XKR9	8.062240e-01
17283	XKRX	5.107792e-01
17284	XPA	2.957481e-01
17285	XPC	6.968655e-01
17286	XPNPEP1	7.625055e-01
17287	XPNPEP2	4.978207e-01
17288	XPNPEP3	8.369817e-01
17289	XPO1	9.261329e-01
17290	XPO4	9.874132e-01
17291	XPO5	1
17292	XPO6	9.233425e-01
17293	XPO7	1
17294	XPOT	9.813090e-01
17295	XPR1	6.824106e-01
17296	XRCC1	8.937169e-01
17297	XRCC2	1
17298	XRCC3	1
17299	XRCC4	1.483575e-01
17300	XRCC5	2.273957e-01
17301	XRCC6	5.477759e-01
17302	XRCC6BP1	1
17303	XRN1	9.991374e-01
17304	XRN2	7.510501e-01
17305	XRRA1	8.813907e-01
17306	XYLB	6.608620e-01
17307	XYLT1	3.446984e-01
17308	XYLT2	1
17309	YAF2	1
17310	YAP1	1
17311	YARS	9.751591e-01
17312	YARS2	1
17313	YBX1	6.773424e-01
17314	YBX2	1
17315	YDJC	1
17316	YEATS2	9.035481e-01
17317	YEATS4	1
17318	YES1	4.058058e-01
17319	YIF1A	8.821849e-01
17320	YIF1B	1
17321	YIPF1	2.094327e-01
17322	YIPF2	1
17323	YIPF3	9.183941e-01
17324	YIPF4	5.122936e-01
17325	YIPF5	1.710983e-01
17326	YIPF6	5.002429e-01
17327	YIPF7	4.653224e-02
17328	YJEFN3	1
17329	YKT6	1
17330	YLPM1	9.873594e-01
17331	YME1L1	1
17332	YOD1	7.410877e-01
17333	YPEL1	1
17334	YPEL2	5.012919e-01
17335	YPEL3	3.243789e-01
17336	YPEL4	1
17337	YPEL5	1.848263e-01
17338	YRDC	3.176181e-01
17339	YSK4	1
17340	YTHDC1	5.761607e-01
17341	YTHDC2	1
17342	YTHDF1	9.741406e-01
17343	YTHDF2	3.169967e-01
17344	YTHDF3	4.947751e-01
17345	YWHAB	1
17346	YWHAE	1
17347	YWHAG	4.540846e-01
17348	YWHAH	1
17349	YWHAQ	1
17350	YWHAZ	1
17351	YY1	3.901733e-01
17352	YY1AP1	9.373936e-01
17353	YY2	6.630096e-01
17354	ZACN	8.604413e-01
17355	ZADH2	7.151529e-01
17356	ZAK	8.635010e-01
17357	ZAN	1
17358	ZAP70	9.531013e-01
17359	ZAR1	1
17360	ZBBX	7.280895e-04
17361	ZBED1	6.022076e-01
17362	ZBED2	7.617452e-01
17363	ZBED4	9.711976e-01
17364	ZBP1	6.445157e-01
17365	ZBTB1	1
17366	ZBTB10	3.823328e-01
17367	ZBTB11	9.956647e-01
17368	ZBTB12	1
17369	ZBTB16	8.883162e-01
17370	ZBTB17	9.928292e-01
Done

Running MutSig 2:
Scatter job 192: processing genes 17281 - 17370
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
Cons ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
KS ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
ZAN   10000 perm   3 sec   (2920 perm/sec)   p_kst 5.447000e-01   p_cons 7.972000e-01   p_joint 8.017000e-01

Outputting figure to mutsig2_images.part000000000192/ZAN.29_8691_10000_0.5447_0.7972_0.8017.png
                gene_name: ZAN
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
XYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
XYLT1   10000 perm   2 sec   (4497 perm/sec)   p_kst 5.950000e-02   p_cons 1.050000e-02   p_joint 8.100000e-03

Joint ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
Cons ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
KS ci ratio: 1.063118e-01	ci left: 6.025648e-02	ci right 6.707105e-02	k: 1272	n:20000
XYLT1   20000 perm   5 sec   (4093 perm/sec)   p_kst 6.360000e-02   p_cons 9.900000e-03   p_joint 1.355000e-02

Joint ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
Cons ci ratio: 2.290713e-01	ci left: 8.559072e-03	ci right 1.080409e-02	k: 289	n:30000
KS ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
XYLT1   30000 perm   8 sec   (3934 perm/sec)   p_kst 5.846667e-02   p_cons 9.633333e-03   p_joint 1.030000e-02

Joint ci ratio: 1.691400e-01	ci left: 1.212844e-02	ci right 1.439304e-02	k: 529	n:40000
Cons ci ratio: 2.003982e-01	ci left: 8.525105e-03	ci right 1.044712e-02	k: 378	n:40000
KS ci ratio: 7.747522e-02	ci left: 5.781490e-02	ci right 6.249921e-02	k: 2405	n:40000
XYLT1   40000 perm   10 sec   (3832 perm/sec)   p_kst 6.012500e-02   p_cons 9.450000e-03   p_joint 1.322500e-02

Joint ci ratio: 1.739011e-01	ci left: 9.184683e-03	ci right 1.095289e-02	k: 502	n:50000
Cons ci ratio: 1.807405e-01	ci left: 8.477237e-03	ci right 1.018046e-02	k: 465	n:50000
KS ci ratio: 6.922876e-02	ci left: 5.817006e-02	ci right 6.236118e-02	k: 3012	n:50000
XYLT1   50000 perm   13 sec   (3754 perm/sec)   p_kst 6.024000e-02   p_cons 9.300000e-03   p_joint 1.004000e-02

Joint ci ratio: 1.311695e-01	ci left: 1.370384e-02	ci right 1.564352e-02	k: 879	n:60000
Cons ci ratio: 1.718233e-01	ci left: 7.860724e-03	ci right 9.354058e-03	k: 515	n:60000
KS ci ratio: 6.306349e-02	ci left: 5.858889e-02	ci right 6.242043e-02	k: 3629	n:60000
XYLT1   60000 perm   16 sec   (3687 perm/sec)   p_kst 6.048333e-02   p_cons 8.583333e-03   p_joint 1.465000e-02

Joint ci ratio: 1.520965e-01	ci left: 8.684658e-03	ci right 1.012788e-02	k: 657	n:70000
Cons ci ratio: 1.613923e-01	ci left: 7.682347e-03	ci right 9.044593e-03	k: 584	n:70000
KS ci ratio: 5.821742e-02	ci left: 5.905495e-02	ci right 6.261013e-02	k: 4257	n:70000
XYLT1   70000 perm   19 sec   (3625 perm/sec)   p_kst 6.081429e-02   p_cons 8.342857e-03   p_joint 9.385714e-03

Joint ci ratio: 1.540871e-01	ci left: 7.406355e-03	ci right 8.654719e-03	k: 641	n:80000
Cons ci ratio: 1.500181e-01	ci left: 7.827335e-03	ci right 9.108695e-03	k: 676	n:80000
KS ci ratio: 5.445320e-02	ci left: 5.917848e-02	ci right 6.250346e-02	k: 4866	n:80000
XYLT1   80000 perm   22 sec   (3567 perm/sec)   p_kst 6.082500e-02   p_cons 8.450000e-03   p_joint 8.012500e-03

Joint ci ratio: 1.630942e-01	ci left: 5.857440e-03	ci right 6.908090e-03	k: 573	n:90000
Cons ci ratio: 1.404767e-01	ci left: 7.974898e-03	ci right 9.190428e-03	k: 771	n:90000
KS ci ratio: 5.114224e-02	ci left: 5.970848e-02	ci right 6.285320e-02	k: 5514	n:90000
XYLT1   90000 perm   26 sec   (3512 perm/sec)   p_kst 6.126667e-02   p_cons 8.566667e-03   p_joint 6.366667e-03

Joint ci ratio: 1.221723e-01	ci left: 9.567082e-03	ci right 1.082157e-02	k: 1018	n:100000
Cons ci ratio: 1.183036e-01	ci left: 1.021713e-02	ci right 1.151148e-02	k: 1085	n:100000
KS ci ratio: 4.849159e-02	ci left: 5.985064e-02	ci right 6.283487e-02	k: 6133	n:100000
XYLT1   100000 perm   29 sec   (3459 perm/sec)   p_kst 6.133000e-02   p_cons 1.085000e-02   p_joint 1.018000e-02

Joint ci ratio: 1.020493e-01	ci left: 1.256044e-02	ci right 1.391995e-02	k: 1455	n:110000
Cons ci ratio: 1.131144e-01	ci left: 1.018873e-02	ci right 1.141908e-02	k: 1187	n:110000
KS ci ratio: 4.627660e-02	ci left: 5.981752e-02	ci right 6.266021e-02	k: 6735	n:110000
XYLT1   110000 perm   32 sec   (3413 perm/sec)   p_kst 6.122727e-02   p_cons 1.079091e-02   p_joint 1.322727e-02

Joint ci ratio: 9.043253e-02	ci left: 1.471901e-02	ci right 1.612122e-02	k: 1849	n:120000
Cons ci ratio: 1.080463e-01	ci left: 1.026342e-02	ci right 1.144373e-02	k: 1301	n:120000
KS ci ratio: 4.432050e-02	ci left: 5.984201e-02	ci right 6.256257e-02	k: 7343	n:120000
XYLT1   120000 perm   36 sec   (3367 perm/sec)   p_kst 6.119167e-02   p_cons 1.084167e-02   p_joint 1.540833e-02

Joint ci ratio: 7.368306e-02	ci left: 2.052199e-02	ci right 2.209947e-02	k: 2769	n:130000
Cons ci ratio: 1.046547e-01	ci left: 1.011783e-02	ci right 1.124262e-02	k: 1387	n:130000
KS ci ratio: 4.257038e-02	ci left: 5.992582e-02	ci right 6.253995e-02	k: 7959	n:130000
XYLT1   130000 perm   39 sec   (3323 perm/sec)   p_kst 6.122308e-02   p_cons 1.066923e-02   p_joint 2.130000e-02

Joint ci ratio: 1.026601e-01	ci left: 9.777713e-03	ci right 1.084272e-02	k: 1442	n:140000
Cons ci ratio: 1.119705e-01	ci left: 8.192388e-03	ci right 9.170982e-03	k: 1214	n:140000
KS ci ratio: 4.110699e-02	ci left: 5.973772e-02	ci right 6.225193e-02	k: 8538	n:140000
XYLT1   140000 perm   43 sec   (3280 perm/sec)   p_kst 6.098571e-02   p_cons 8.671429e-03   p_joint 1.030000e-02

Joint ci ratio: 9.980292e-02	ci left: 9.671661e-03	ci right 1.069407e-02	k: 1526	n:150000
Cons ci ratio: 1.075829e-01	ci left: 8.301102e-03	ci right 9.251365e-03	k: 1315	n:150000
KS ci ratio: 3.973610e-02	ci left: 5.971475e-02	ci right 6.214226e-02	k: 9138	n:150000
XYLT1   150000 perm   46 sec   (3239 perm/sec)   p_kst 6.092000e-02   p_cons 8.766667e-03   p_joint 1.017333e-02

Joint ci ratio: 9.838173e-02	ci left: 9.341383e-03	ci right 1.031400e-02	k: 1571	n:160000
Cons ci ratio: 1.045708e-01	ci left: 8.250754e-03	ci right 9.167182e-03	k: 1392	n:160000
KS ci ratio: 3.847278e-02	ci left: 5.975782e-02	ci right 6.210813e-02	k: 9748	n:160000
XYLT1   160000 perm   50 sec   (3201 perm/sec)   p_kst 6.092500e-02   p_cons 8.700000e-03   p_joint 9.818750e-03

Joint ci ratio: 8.452349e-02	ci left: 1.196573e-02	ci right 1.302746e-02	k: 2123	n:170000
Cons ci ratio: 1.011753e-01	ci left: 8.309875e-03	ci right 9.201117e-03	k: 1487	n:170000
KS ci ratio: 3.728063e-02	ci left: 5.992518e-02	ci right 6.220747e-02	k: 10380	n:170000
XYLT1   170000 perm   54 sec   (3163 perm/sec)   p_kst 6.105882e-02   p_cons 8.747059e-03   p_joint 1.248824e-02

Joint ci ratio: 7.870379e-02	ci left: 1.305910e-02	ci right 1.413442e-02	k: 2446	n:180000
Cons ci ratio: 9.774830e-02	ci left: 8.422480e-03	ci right 9.293449e-03	k: 1593	n:180000
KS ci ratio: 3.620334e-02	ci left: 6.004189e-02	ci right 6.226116e-02	k: 11006	n:180000
XYLT1   180000 perm   58 sec   (3125 perm/sec)   p_kst 6.114444e-02   p_cons 8.850000e-03   p_joint 1.358889e-02

Outputting figure to mutsig2_images.part000000000192/XYLT1.19_2928_180000_0.061144_0.00885_0.013589.png
                gene_name: XYLT1
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.0089 
      ci_cons_bounds_left: 0.0084 
     ci_cons_bounds_right: 0.0093 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 4 percent done.
ZBBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
Cons ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KS ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
ZBBX   10000 perm   2 sec   (4893 perm/sec)   p_kst 1.825000e-01   p_cons 7.007000e-01   p_joint 4.362000e-01

Outputting figure to mutsig2_images.part000000000192/ZBBX.14_2475_10000_0.1825_0.7007_0.4362.png
                gene_name: ZBBX
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 6 percent done.
YEATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 7.847161e-02	ci left: 1.918044e-01	ci right 2.075710e-01	k: 1996	n:10000
YEATS2   10000 perm   2 sec   (4710 perm/sec)   p_kst 1.996000e-01   p_cons 5.709000e-01   p_joint 3.309000e-01

Outputting figure to mutsig2_images.part000000000192/YEATS2.10_4389_10000_0.1996_0.5709_0.3309.png
                gene_name: YEATS2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 7 percent done.
YLPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
Cons ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
YLPM1   10000 perm   3 sec   (3866 perm/sec)   p_kst 8.350000e-02   p_cons 8.091000e-01   p_joint 1.805000e-01

Joint ci ratio: 5.874355e-02	ci left: 1.767235e-01	ci right 1.874691e-01	k: 3641	n:20000
Cons ci ratio: 1.287709e-02	ci left: 8.171328e-01	ci right 8.277733e-01	k: 16450	n:20000
KS ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
YLPM1   20000 perm   6 sec   (3581 perm/sec)   p_kst 8.545000e-02   p_cons 8.225000e-01   p_joint 1.820500e-01

Outputting figure to mutsig2_images.part000000000192/YLPM1.10_6521_20000_0.08545_0.8225_0.18205.png
                gene_name: YLPM1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
ZBED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
Cons ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
KS ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
ZBED1   10000 perm   2 sec   (5134 perm/sec)   p_kst 3.395000e-01   p_cons 6.679000e-01   p_joint 4.822000e-01

Outputting figure to mutsig2_images.part000000000192/ZBED1.9_2089_10000_0.3395_0.6679_0.4822.png
                gene_name: ZBED1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 11 percent done.
YSK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
YSK4   10000 perm   2 sec   (4845 perm/sec)   p_kst 3.414000e-01   p_cons 6.936000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000192/YSK4.8_4027_10000_0.3414_0.6936_0.5145.png
                gene_name: YSK4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 13 percent done.
ZBED4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.449905e-02	ci left: 7.101782e-01	ci right 7.278940e-01	k: 7191	n:10000
Cons ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
KS ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
ZBED4   10000 perm   2 sec   (4377 perm/sec)   p_kst 4.701000e-01   p_cons 6.777000e-01   p_joint 7.191000e-01

Outputting figure to mutsig2_images.part000000000192/ZBED4.8_3520_10000_0.4701_0.6777_0.7191.png
                gene_name: ZBED4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 15 percent done.
XPNPEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
KS ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
XPNPEP2   10000 perm   2 sec   (5383 perm/sec)   p_kst 7.506000e-01   p_cons 6.549000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPNPEP2.7_2109_10000_0.7506_0.6549_1.png
                gene_name: XPNPEP2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
XRCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
Cons ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
KS ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
XRCC5   10000 perm   2 sec   (5371 perm/sec)   p_kst 8.589000e-01   p_cons 5.278000e-01   p_joint 8.464000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC5.6_2283_10000_0.8589_0.5278_0.8464.png
                gene_name: XRCC5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 19 percent done.
XRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
Cons ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
KS ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
XRN1   10000 perm   2 sec   (4343 perm/sec)   p_kst 2.546000e-01   p_cons 1.170000e-01   p_joint 1.893000e-01

Joint ci ratio: 6.538094e-02	ci left: 1.473461e-01	ci right 1.573552e-01	k: 3046	n:20000
Cons ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
KS ci ratio: 4.756566e-02	ci left: 2.474327e-01	ci right 2.595391e-01	k: 5069	n:20000
XRN1   20000 perm   6 sec   (3231 perm/sec)   p_kst 2.534500e-01   p_cons 1.144500e-01   p_joint 1.523000e-01

Outputting figure to mutsig2_images.part000000000192/XRN1.6_5289_20000_0.25345_0.11445_0.1523.png
                gene_name: XRN1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 20 percent done.
XRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
Cons ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
XRN2   10000 perm   2 sec   (5331 perm/sec)   p_kst 4.920000e-01   p_cons 7.796000e-01   p_joint 5.904000e-01

Outputting figure to mutsig2_images.part000000000192/XRN2.5_2973_10000_0.492_0.7796_0.5904.png
                gene_name: XRN2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
YTHDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
Cons ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
KS ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
YTHDF2   10000 perm   2 sec   (5383 perm/sec)   p_kst 6.867000e-01   p_cons 7.570000e-02   p_joint 3.150000e-01

Joint ci ratio: 4.559456e-02	ci left: 2.636574e-01	ci right 2.760096e-01	k: 5396	n:20000
Cons ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
KS ci ratio: 1.881785e-02	ci left: 6.780080e-01	ci right 6.909383e-01	k: 13690	n:20000
YTHDF2   20000 perm   4 sec   (4868 perm/sec)   p_kst 6.845000e-01   p_cons 7.785000e-02   p_joint 2.698000e-01

Outputting figure to mutsig2_images.part000000000192/YTHDF2.5_1760_20000_0.6845_0.07785_0.2698.png
                gene_name: YTHDF2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 24 percent done.
YY2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
Cons ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
KS ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
YY2   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.386000e-01   p_cons 1.276000e-01   p_joint 3.125000e-01

Joint ci ratio: 4.632892e-02	ci left: 2.574540e-01	ci right 2.697148e-01	k: 5271	n:20000
Cons ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
KS ci ratio: 3.139526e-02	ci left: 4.311084e-01	ci right 4.449096e-01	k: 8760	n:20000
YY2   20000 perm   4 sec   (4906 perm/sec)   p_kst 4.380000e-01   p_cons 1.254500e-01   p_joint 2.635500e-01

Outputting figure to mutsig2_images.part000000000192/YY2.4_1123_20000_0.438_0.12545_0.26355.png
                gene_name: YY2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 26 percent done.
XPOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
Cons ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
KS ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
XPOT   10000 perm   2 sec   (5227 perm/sec)   p_kst 9.690000e-02   p_cons 3.272000e-01   p_joint 1.192000e-01

Joint ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
Cons ci ratio: 3.941114e-02	ci left: 3.243788e-01	ci right 3.374704e-01	k: 6618	n:20000
KS ci ratio: 8.421077e-02	ci left: 9.361882e-02	ci right 1.018985e-01	k: 1954	n:20000
XPOT   20000 perm   4 sec   (4761 perm/sec)   p_kst 9.770000e-02   p_cons 3.309000e-01   p_joint 8.560000e-02

Outputting figure to mutsig2_images.part000000000192/XPOT.4_2985_20000_0.0977_0.3309_0.0856.png
                gene_name: XPOT
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 28 percent done.
XRCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
KS ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
XRCC4   10000 perm   2 sec   (6522 perm/sec)   p_kst 3.265000e-01   p_cons 2.287000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC4.4_1039_10000_0.3265_0.2287_0.3927.png
                gene_name: XRCC4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 30 percent done.
XRCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
XRCC6   10000 perm   2 sec   (5702 perm/sec)   p_kst 4.023000e-01   p_cons 2.170000e-02   p_joint 7.510000e-02

Joint ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
Cons ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
KS ci ratio: 3.359394e-02	ci left: 3.981859e-01	ci right 4.118417e-01	k: 8100	n:20000
XRCC6   20000 perm   4 sec   (5093 perm/sec)   p_kst 4.050000e-01   p_cons 2.140000e-02   p_joint 7.415000e-02

Joint ci ratio: 7.863341e-02	ci left: 7.348400e-02	ci right 7.953165e-02	k: 2294	n:30000
Cons ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
KS ci ratio: 2.726396e-02	ci left: 4.023646e-01	ci right 4.135199e-01	k: 12238	n:30000
XRCC6   30000 perm   6 sec   (4886 perm/sec)   p_kst 4.079333e-01   p_cons 2.383333e-02   p_joint 7.646667e-02

Joint ci ratio: 7.509591e-02	ci left: 6.137507e-02	ci right 6.618850e-02	k: 2550	n:40000
Cons ci ratio: 1.282424e-01	ci left: 2.135945e-02	ci right 2.431039e-02	k: 912	n:40000
KS ci ratio: 2.381858e-02	ci left: 3.989114e-01	ci right 4.085526e-01	k: 16149	n:40000
XRCC6   40000 perm   8 sec   (4737 perm/sec)   p_kst 4.037250e-01   p_cons 2.280000e-02   p_joint 6.375000e-02

Joint ci ratio: 7.359096e-02	ci left: 5.172040e-02	ci right 5.569161e-02	k: 2684	n:50000
Cons ci ratio: 1.161306e-01	ci left: 2.098468e-02	ci right 2.359120e-02	k: 1113	n:50000
KS ci ratio: 2.122585e-02	ci left: 4.011920e-01	ci right 4.098190e-01	k: 20275	n:50000
XRCC6   50000 perm   11 sec   (4617 perm/sec)   p_kst 4.055000e-01   p_cons 2.226000e-02   p_joint 5.368000e-02

Joint ci ratio: 6.404576e-02	ci left: 5.688144e-02	ci right 6.066138e-02	k: 3525	n:60000
Cons ci ratio: 1.059638e-01	ci left: 2.111710e-02	ci right 2.349609e-02	k: 1337	n:60000
KS ci ratio: 1.912039e-02	ci left: 4.079911e-01	ci right 4.158841e-01	k: 24716	n:60000
XRCC6   60000 perm   13 sec   (4517 perm/sec)   p_kst 4.119333e-01   p_cons 2.228333e-02   p_joint 5.875000e-02

Joint ci ratio: 5.660677e-02	ci left: 6.229651e-02	ci right 6.593972e-02	k: 4487	n:70000
Cons ci ratio: 9.800721e-02	ci left: 2.124674e-02	ci right 2.345025e-02	k: 1563	n:70000
KS ci ratio: 1.773208e-02	ci left: 4.074659e-01	ci right 4.147700e-01	k: 28778	n:70000
XRCC6   70000 perm   16 sec   (4424 perm/sec)   p_kst 4.111143e-01   p_cons 2.232857e-02   p_joint 6.410000e-02

Outputting figure to mutsig2_images.part000000000192/XRCC6.4_1878_70000_0.41111_0.022329_0.0641.png
                gene_name: XRCC6
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 31 percent done.
YIPF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
Cons ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
KS ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
YIPF7   10000 perm   2 sec   (6646 perm/sec)   p_kst 3.328000e-01   p_cons 4.009000e-01   p_joint 5.801000e-01

Outputting figure to mutsig2_images.part000000000192/YIPF7.4_867_10000_0.3328_0.4009_0.5801.png
                gene_name: YIPF7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
YTHDF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
Cons ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
KS ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
YTHDF1   10000 perm   2 sec   (5750 perm/sec)   p_kst 5.231000e-01   p_cons 3.350000e-02   p_joint 1.404000e-01

Joint ci ratio: 4.408194e-02	ci left: 2.770620e-01	ci right 2.896011e-01	k: 5666	n:20000
Cons ci ratio: 1.335450e-01	ci left: 3.853576e-02	ci right 4.409860e-02	k: 825	n:20000
KS ci ratio: 2.688105e-02	ci left: 5.083469e-01	ci right 5.222486e-01	k: 10306	n:20000
YTHDF1   20000 perm   4 sec   (5208 perm/sec)   p_kst 5.153000e-01   p_cons 4.125000e-02   p_joint 2.833000e-01

Joint ci ratio: 3.179421e-02	ci left: 3.309201e-01	ci right 3.416450e-01	k: 10088	n:30000
Cons ci ratio: 1.094088e-01	ci left: 3.878406e-02	ci right 4.330537e-02	k: 1230	n:30000
KS ci ratio: 2.196933e-02	ci left: 5.091600e-01	ci right 5.205038e-01	k: 15445	n:30000
YTHDF1   30000 perm   6 sec   (4990 perm/sec)   p_kst 5.148333e-01   p_cons 4.100000e-02   p_joint 3.362667e-01

Joint ci ratio: 3.192626e-02	ci left: 2.693347e-01	ci right 2.780981e-01	k: 10948	n:40000
Cons ci ratio: 9.524641e-02	ci left: 3.868680e-02	ci right 4.258024e-02	k: 1624	n:40000
KS ci ratio: 1.900751e-02	ci left: 5.104139e-01	ci right 5.202338e-01	k: 20613	n:40000
YTHDF1   40000 perm   8 sec   (4843 perm/sec)   p_kst 5.153250e-01   p_cons 4.060000e-02   p_joint 2.737000e-01

Outputting figure to mutsig2_images.part000000000192/YTHDF1.4_1700_40000_0.51533_0.0406_0.2737.png
                gene_name: YTHDF1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
ZADH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
KS ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
ZADH2   10000 perm   2 sec   (6015 perm/sec)   p_kst 9.086000e-01   p_cons 8.445000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/ZADH2.4_1142_10000_0.9086_0.8445_1.png
                gene_name: ZADH2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
ZAP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.474170e-02	ci left: 7.061416e-01	ci right 7.239330e-01	k: 7151	n:10000
Cons ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
ZAP70   10000 perm   2 sec   (5947 perm/sec)   p_kst 3.789000e-01   p_cons 6.982000e-01   p_joint 7.151000e-01

Outputting figure to mutsig2_images.part000000000192/ZAP70.4_1908_10000_0.3789_0.6982_0.7151.png
                gene_name: ZAP70
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 39 percent done.
ZBTB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
Cons ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
ZBTB10   10000 perm   2 sec   (5149 perm/sec)   p_kst 1.610000e-02   p_cons 7.594000e-01   p_joint 6.030000e-02

Joint ci ratio: 1.135882e-01	ci left: 5.299920e-02	ci right 5.943059e-02	k: 1123	n:20000
Cons ci ratio: 1.503586e-02	ci left: 7.667770e-01	ci right 7.784437e-01	k: 15453	n:20000
KS ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
ZBTB10   20000 perm   4 sec   (4760 perm/sec)   p_kst 1.460000e-02   p_cons 7.726500e-01   p_joint 5.615000e-02

Joint ci ratio: 7.976814e-02	ci left: 7.152057e-02	ci right 7.749548e-02	k: 2234	n:30000
Cons ci ratio: 1.242746e-02	ci left: 7.635167e-01	ci right 7.730980e-01	k: 23050	n:30000
KS ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
ZBTB10   30000 perm   7 sec   (4591 perm/sec)   p_kst 1.543333e-02   p_cons 7.683333e-01   p_joint 7.446667e-02

Joint ci ratio: 7.827447e-02	ci left: 5.668596e-02	ci right 6.132832e-02	k: 2359	n:40000
Cons ci ratio: 1.069623e-02	ci left: 7.663722e-01	ci right 7.746385e-01	k: 30821	n:40000
KS ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
ZBTB10   40000 perm   9 sec   (4460 perm/sec)   p_kst 1.557500e-02   p_cons 7.705250e-01   p_joint 5.897500e-02

Joint ci ratio: 8.066550e-02	ci left: 4.327785e-02	ci right 4.693520e-02	k: 2254	n:50000
Cons ci ratio: 9.557394e-03	ci left: 7.671706e-01	ci right 7.745579e-01	k: 38544	n:50000
KS ci ratio: 1.393488e-01	ci left: 1.449336e-02	ci right 1.668340e-02	k: 778	n:50000
ZBTB10   50000 perm   12 sec   (4345 perm/sec)   p_kst 1.556000e-02   p_cons 7.708800e-01   p_joint 4.508000e-02

Joint ci ratio: 7.809484e-02	ci left: 3.872399e-02	ci right 4.188734e-02	k: 2417	n:60000
Cons ci ratio: 8.736520e-03	ci left: 7.670134e-01	ci right 7.737604e-01	k: 46224	n:60000
KS ci ratio: 1.267813e-01	ci left: 1.468817e-02	ci right 1.669241e-02	k: 940	n:60000
ZBTB10   60000 perm   14 sec   (4252 perm/sec)   p_kst 1.566667e-02   p_cons 7.704000e-01   p_joint 4.028333e-02

Joint ci ratio: 6.459165e-02	ci left: 4.836887e-02	ci right 5.161142e-02	k: 3498	n:70000
Cons ci ratio: 8.078646e-03	ci left: 7.676967e-01	ci right 7.739380e-01	k: 53958	n:70000
KS ci ratio: 1.178045e-01	ci left: 1.465335e-02	ci right 1.650140e-02	k: 1089	n:70000
ZBTB10   70000 perm   17 sec   (4174 perm/sec)   p_kst 1.555714e-02   p_cons 7.708286e-01   p_joint 4.997143e-02

Joint ci ratio: 6.201041e-02	ci left: 4.609781e-02	ci right 4.906011e-02	k: 3805	n:80000
Cons ci ratio: 7.543054e-03	ci left: 7.685494e-01	ci right 7.743810e-01	k: 61718	n:80000
KS ci ratio: 1.106806e-01	ci left: 1.458239e-02	ci right 1.630301e-02	k: 1234	n:80000
ZBTB10   80000 perm   20 sec   (4096 perm/sec)   p_kst 1.542500e-02   p_cons 7.714750e-01   p_joint 4.756250e-02

Joint ci ratio: 6.589469e-02	ci left: 3.658527e-02	ci right 3.908908e-02	k: 3404	n:90000
Cons ci ratio: 7.113620e-03	ci left: 7.686199e-01	ci right 7.741181e-01	k: 69424	n:90000
KS ci ratio: 1.047487e-01	ci left: 1.451901e-02	ci right 1.613467e-02	k: 1378	n:90000
ZBTB10   90000 perm   22 sec   (4022 perm/sec)   p_kst 1.531111e-02   p_cons 7.713778e-01   p_joint 3.782222e-02

Joint ci ratio: 6.057054e-02	ci left: 3.898105e-02	ci right 4.142571e-02	k: 4019	n:100000
Cons ci ratio: 6.891530e-03	ci left: 7.612552e-01	ci right 7.665295e-01	k: 76390	n:100000
KS ci ratio: 9.941368e-02	ci left: 1.454833e-02	ci right 1.607997e-02	k: 1530	n:100000
ZBTB10   100000 perm   25 sec   (3953 perm/sec)   p_kst 1.530000e-02   p_cons 7.639000e-01   p_joint 4.019000e-02

Outputting figure to mutsig2_images.part000000000192/ZBTB10.4_2640_100000_0.0153_0.7639_0.04019.png
                gene_name: ZBTB10
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 41 percent done.
ZBTB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
Cons ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
KS ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
ZBTB11   10000 perm   2 sec   (5159 perm/sec)   p_kst 5.592000e-01   p_cons 4.105000e-01   p_joint 6.589000e-01

Outputting figure to mutsig2_images.part000000000192/ZBTB11.4_3206_10000_0.5592_0.4105_0.6589.png
                gene_name: ZBTB11
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 43 percent done.
XKRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
Cons ci ratio: 5.134966e-02	ci left: 3.586369e-01	ci right 3.776400e-01	k: 3681	n:10000
KS ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
XKRX   10000 perm   2 sec   (6051 perm/sec)   p_kst 6.258000e-01   p_cons 3.681000e-01   p_joint 5.818000e-01

Outputting figure to mutsig2_images.part000000000192/XKRX.3_1362_10000_0.6258_0.3681_0.5818.png
                gene_name: XKRX
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 44 percent done.
XPC
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 46 percent done.
XPNPEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
Cons ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
KS ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
XPNPEP1   10000 perm   2 sec   (5694 perm/sec)   p_kst 1.844000e-01   p_cons 1.701000e-01   p_joint 1.202000e-01

Joint ci ratio: 7.712032e-02	ci left: 1.099708e-01	ci right 1.188416e-01	k: 2287	n:20000
Cons ci ratio: 6.086913e-02	ci left: 1.664965e-01	ci right 1.769991e-01	k: 3434	n:20000
KS ci ratio: 5.833271e-02	ci left: 1.787993e-01	ci right 1.895926e-01	k: 3683	n:20000
XPNPEP1   20000 perm   4 sec   (5149 perm/sec)   p_kst 1.841500e-01   p_cons 1.717000e-01   p_joint 1.143500e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP1.3_2085_20000_0.18415_0.1717_0.11435.png
                gene_name: XPNPEP1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
XPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
KS ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
XPO1   10000 perm   2 sec   (5291 perm/sec)   p_kst 3.700000e-03   p_cons 6.594000e-01   p_joint 9.200000e-03

Joint ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
Cons ci ratio: 1.971476e-02	ci left: 6.574556e-01	ci right 6.705967e-01	k: 13281	n:20000
KS ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
XPO1   20000 perm   4 sec   (4825 perm/sec)   p_kst 3.600000e-03   p_cons 6.640500e-01   p_joint 4.600000e-03

Joint ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
Cons ci ratio: 1.607620e-02	ci left: 6.592585e-01	ci right 6.699763e-01	k: 19939	n:30000
KS ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
XPO1   30000 perm   6 sec   (4637 perm/sec)   p_kst 3.400000e-03   p_cons 6.646333e-01   p_joint 4.466667e-03

Joint ci ratio: 2.582951e-01	ci left: 4.985810e-03	ci right 6.487312e-03	k: 228	n:40000
Cons ci ratio: 1.387437e-02	ci left: 6.615292e-01	ci right 6.707967e-01	k: 26647	n:40000
KS ci ratio: 3.027011e-01	ci left: 3.543725e-03	ci right 4.829897e-03	k: 166	n:40000
XPO1   40000 perm   9 sec   (4502 perm/sec)   p_kst 4.150000e-03   p_cons 6.661750e-01   p_joint 5.700000e-03

Joint ci ratio: 2.556555e-01	ci left: 4.081954e-03	ci right 5.296654e-03	k: 233	n:50000
Cons ci ratio: 1.246760e-02	ci left: 6.599407e-01	ci right 6.682402e-01	k: 33205	n:50000
KS ci ratio: 2.712345e-01	ci left: 3.596140e-03	ci right 4.742604e-03	k: 207	n:50000
XPO1   50000 perm   11 sec   (4402 perm/sec)   p_kst 4.140000e-03   p_cons 6.641000e-01   p_joint 4.660000e-03

Joint ci ratio: 2.308343e-01	ci left: 4.231286e-03	ci right 5.350776e-03	k: 286	n:60000
Cons ci ratio: 1.138899e-02	ci left: 6.600038e-01	ci right 6.675803e-01	k: 39828	n:60000
KS ci ratio: 2.454395e-01	ci left: 3.713948e-03	ci right 4.768227e-03	k: 253	n:60000
XPO1   60000 perm   14 sec   (4310 perm/sec)   p_kst 4.216667e-03   p_cons 6.638000e-01   p_joint 4.766667e-03

Joint ci ratio: 2.156066e-01	ci left: 4.193291e-03	ci right 5.219858e-03	k: 328	n:70000
Cons ci ratio: 1.056341e-02	ci left: 6.594702e-01	ci right 6.664877e-01	k: 46409	n:70000
KS ci ratio: 2.293147e-01	ci left: 3.680541e-03	ci right 4.646986e-03	k: 290	n:70000
XPO1   70000 perm   17 sec   (4225 perm/sec)   p_kst 4.142857e-03   p_cons 6.629857e-01   p_joint 4.685714e-03

Joint ci ratio: 1.832480e-01	ci left: 5.166207e-03	ci right 6.220127e-03	k: 454	n:80000
Cons ci ratio: 9.875340e-03	ci left: 6.599630e-01	ci right 6.665252e-01	k: 53060	n:80000
KS ci ratio: 2.134026e-01	ci left: 3.751835e-03	ci right 4.659700e-03	k: 335	n:80000
XPO1   80000 perm   19 sec   (4151 perm/sec)   p_kst 4.187500e-03   p_cons 6.632500e-01   p_joint 5.675000e-03

Joint ci ratio: 1.725773e-01	ci left: 5.207958e-03	ci right 6.202086e-03	k: 512	n:90000
Cons ci ratio: 9.304897e-03	ci left: 6.604245e-01	ci right 6.666094e-01	k: 59717	n:90000
KS ci ratio: 2.028209e-01	ci left: 3.714121e-03	ci right 4.562775e-03	k: 371	n:90000
XPO1   90000 perm   22 sec   (4075 perm/sec)   p_kst 4.122222e-03   p_cons 6.635222e-01   p_joint 5.688889e-03

Joint ci ratio: 1.627194e-01	ci left: 5.300347e-03	ci right 6.248664e-03	k: 576	n:100000
Cons ci ratio: 8.819348e-03	ci left: 6.609926e-01	ci right 6.668579e-01	k: 66393	n:100000
KS ci ratio: 1.941500e-01	ci left: 3.665808e-03	ci right 4.463381e-03	k: 405	n:100000
XPO1   100000 perm   25 sec   (4006 perm/sec)   p_kst 4.050000e-03   p_cons 6.639300e-01   p_joint 5.760000e-03

Joint ci ratio: 1.562276e-01	ci left: 5.246167e-03	ci right 6.143833e-03	k: 625	n:110000
Cons ci ratio: 8.409661e-03	ci left: 6.610906e-01	ci right 6.666826e-01	k: 73028	n:110000
KS ci ratio: 1.862913e-01	ci left: 3.635581e-03	ci right 4.390939e-03	k: 440	n:110000
XPO1   110000 perm   28 sec   (3943 perm/sec)   p_kst 4.000000e-03   p_cons 6.638909e-01   p_joint 5.681818e-03

Joint ci ratio: 1.502316e-01	ci left: 5.217689e-03	ci right 6.073135e-03	k: 676	n:120000
Cons ci ratio: 8.038402e-03	ci left: 6.619457e-01	ci right 6.672964e-01	k: 79755	n:120000
KS ci ratio: 1.789384e-01	ci left: 3.626856e-03	ci right 4.347440e-03	k: 477	n:120000
XPO1   120000 perm   31 sec   (3881 perm/sec)   p_kst 3.975000e-03   p_cons 6.646250e-01   p_joint 5.633333e-03

Joint ci ratio: 1.442802e-01	ci left: 5.238642e-03	ci right 6.060568e-03	k: 733	n:130000
Cons ci ratio: 7.720818e-03	ci left: 6.621802e-01	ci right 6.673202e-01	k: 86418	n:130000
KS ci ratio: 1.713932e-01	ci left: 3.664145e-03	ci right 4.358267e-03	k: 520	n:130000
XPO1   130000 perm   34 sec   (3822 perm/sec)   p_kst 4.000000e-03   p_cons 6.647538e-01   p_joint 5.638462e-03

Joint ci ratio: 1.398763e-01	ci left: 5.188225e-03	ci right 5.975322e-03	k: 780	n:140000
Cons ci ratio: 7.440988e-03	ci left: 6.622129e-01	ci right 6.671660e-01	k: 93057	n:140000
KS ci ratio: 1.662144e-01	ci left: 3.628172e-03	ci right 4.292632e-03	k: 553	n:140000
XPO1   140000 perm   37 sec   (3766 perm/sec)   p_kst 3.950000e-03   p_cons 6.646929e-01   p_joint 5.571429e-03

Joint ci ratio: 1.355237e-01	ci left: 5.170628e-03	ci right 5.928677e-03	k: 831	n:150000
Cons ci ratio: 7.184372e-03	ci left: 6.625649e-01	ci right 6.673488e-01	k: 99744	n:150000
KS ci ratio: 1.614783e-01	ci left: 3.597269e-03	ci right 4.235476e-03	k: 586	n:150000
XPO1   150000 perm   40 sec   (3710 perm/sec)   p_kst 3.906667e-03   p_cons 6.649600e-01   p_joint 5.540000e-03

Joint ci ratio: 1.306638e-01	ci left: 5.228116e-03	ci right 5.964974e-03	k: 894	n:160000
Cons ci ratio: 6.958543e-03	ci left: 6.624934e-01	ci right 6.671257e-01	k: 106370	n:160000
KS ci ratio: 1.557442e-01	ci left: 3.636532e-03	ci right 4.256656e-03	k: 630	n:160000
XPO1   160000 perm   44 sec   (3655 perm/sec)   p_kst 3.937500e-03   p_cons 6.648125e-01   p_joint 5.587500e-03

Joint ci ratio: 1.271623e-01	ci left: 5.205209e-03	ci right 5.917695e-03	k: 944	n:170000
Cons ci ratio: 6.751504e-03	ci left: 6.625149e-01	ci right 6.670089e-01	k: 113010	n:170000
KS ci ratio: 1.517130e-01	ci left: 3.614922e-03	ci right 4.213956e-03	k: 664	n:170000
XPO1   170000 perm   47 sec   (3604 perm/sec)   p_kst 3.905882e-03   p_cons 6.647647e-01   p_joint 5.552941e-03

Joint ci ratio: 1.229992e-01	ci left: 5.265854e-03	ci right 5.961325e-03	k: 1009	n:180000
Cons ci ratio: 6.561746e-03	ci left: 6.625470e-01	ci right 6.669143e-01	k: 119652	n:180000
KS ci ratio: 1.470322e-01	ci left: 3.644059e-03	ci right 4.227652e-03	k: 707	n:180000
XPO1   180000 perm   51 sec   (3553 perm/sec)   p_kst 3.927778e-03   p_cons 6.647333e-01   p_joint 5.605556e-03

Joint ci ratio: 1.215147e-01	ci left: 5.116234e-03	ci right 5.783202e-03	k: 1034	n:190000
Cons ci ratio: 6.389024e-03	ci left: 6.624456e-01	ci right 6.666968e-01	k: 126269	n:190000
KS ci ratio: 1.428550e-01	ci left: 3.665306e-03	ci right 4.234204e-03	k: 749	n:190000
XPO1   190000 perm   54 sec   (3502 perm/sec)   p_kst 3.942105e-03   p_cons 6.645737e-01   p_joint 5.442105e-03

Joint ci ratio: 1.211203e-01	ci left: 4.894326e-03	ci right 5.530144e-03	k: 1041	n:200000
Cons ci ratio: 6.232192e-03	ci left: 6.621454e-01	ci right 6.662899e-01	k: 132844	n:200000
KS ci ratio: 1.399941e-01	ci left: 3.631552e-03	ci right 4.182980e-03	k: 780	n:200000
XPO1   200000 perm   58 sec   (3453 perm/sec)   p_kst 3.900000e-03   p_cons 6.642200e-01   p_joint 5.205000e-03

Joint ci ratio: 1.185339e-01	ci left: 4.873742e-03	ci right 5.492418e-03	k: 1087	n:210000
Cons ci ratio: 6.084673e-03	ci left: 6.619990e-01	ci right 6.660441e-01	k: 139445	n:210000
KS ci ratio: 1.370446e-01	ci left: 3.614912e-03	ci right 4.151306e-03	k: 814	n:210000
XPO1   210000 perm   62 sec   (3404 perm/sec)   p_kst 3.876190e-03   p_cons 6.640238e-01   p_joint 5.176190e-03

Joint ci ratio: 1.155445e-01	ci left: 4.903719e-03	ci right 5.509430e-03	k: 1144	n:220000
Cons ci ratio: 5.944732e-03	ci left: 6.620491e-01	ci right 6.660011e-01	k: 146086	n:220000
KS ci ratio: 1.339575e-01	ci left: 3.617471e-03	ci right 4.141189e-03	k: 852	n:220000
XPO1   220000 perm   65 sec   (3360 perm/sec)   p_kst 3.872727e-03   p_cons 6.640273e-01   p_joint 5.200000e-03

Joint ci ratio: 1.128648e-01	ci left: 4.922816e-03	ci right 5.515845e-03	k: 1199	n:230000
Cons ci ratio: 5.819575e-03	ci left: 6.616692e-01	ci right 6.655354e-01	k: 152629	n:230000
KS ci ratio: 1.311439e-01	ci left: 3.615724e-03	ci right 4.127339e-03	k: 889	n:230000
XPO1   230000 perm   69 sec   (3315 perm/sec)   p_kst 3.865217e-03   p_cons 6.636043e-01   p_joint 5.213043e-03

Joint ci ratio: 1.087209e-01	ci left: 5.094487e-03	ci right 5.684222e-03	k: 1292	n:240000
Cons ci ratio: 5.697153e-03	ci left: 6.617015e-01	ci right 6.654862e-01	k: 159263	n:240000
KS ci ratio: 1.280851e-01	ci left: 3.638429e-03	ci right 4.140336e-03	k: 932	n:240000
XPO1   240000 perm   73 sec   (3272 perm/sec)   p_kst 3.883333e-03   p_cons 6.635958e-01   p_joint 5.383333e-03

Joint ci ratio: 1.066387e-01	ci left: 5.089212e-03	ci right 5.666346e-03	k: 1343	n:250000
Cons ci ratio: 5.582846e-03	ci left: 6.616759e-01	ci right 6.653843e-01	k: 165883	n:250000
KS ci ratio: 1.258144e-01	ci left: 3.624571e-03	ci right 4.115041e-03	k: 966	n:250000
XPO1   250000 perm   77 sec   (3230 perm/sec)   p_kst 3.864000e-03   p_cons 6.635320e-01   p_joint 5.372000e-03

Joint ci ratio: 1.043714e-01	ci left: 5.114412e-03	ci right 5.681315e-03	k: 1402	n:260000
Cons ci ratio: 5.475579e-03	ci left: 6.616184e-01	ci right 6.652549e-01	k: 172494	n:260000
KS ci ratio: 1.234748e-01	ci left: 3.623035e-03	ci right 4.103513e-03	k: 1003	n:260000
XPO1   260000 perm   82 sec   (3190 perm/sec)   p_kst 3.857692e-03   p_cons 6.634385e-01   p_joint 5.392308e-03

Joint ci ratio: 1.033140e-01	ci left: 5.029596e-03	ci right 5.581105e-03	k: 1431	n:270000
Cons ci ratio: 5.371725e-03	ci left: 6.617772e-01	ci right 6.653453e-01	k: 179162	n:270000
KS ci ratio: 1.234836e-01	ci left: 3.488834e-03	ci right 3.951549e-03	k: 1003	n:270000
XPO1   270000 perm   86 sec   (3150 perm/sec)   p_kst 3.714815e-03   p_cons 6.635630e-01   p_joint 5.300000e-03

Joint ci ratio: 1.133932e-01	ci left: 4.008930e-03	ci right 4.494276e-03	k: 1189	n:280000
Cons ci ratio: 5.274830e-03	ci left: 6.618179e-01	ci right 6.653216e-01	k: 185800	n:280000
KS ci ratio: 1.211526e-01	ci left: 3.499258e-03	ci right 3.953967e-03	k: 1042	n:280000
XPO1   280000 perm   90 sec   (3114 perm/sec)   p_kst 3.721429e-03   p_cons 6.635714e-01   p_joint 4.246429e-03

Joint ci ratio: 1.113077e-01	ci left: 4.021505e-03	ci right 4.498831e-03	k: 1234	n:290000
Cons ci ratio: 5.181835e-03	ci left: 6.619564e-01	ci right 6.653989e-01	k: 192467	n:290000
KS ci ratio: 1.190593e-01	ci left: 3.502347e-03	ci right 3.949040e-03	k: 1079	n:290000
XPO1   290000 perm   94 sec   (3079 perm/sec)   p_kst 3.720690e-03   p_cons 6.636793e-01   p_joint 4.255172e-03

Joint ci ratio: 1.090767e-01	ci left: 4.052773e-03	ci right 4.523549e-03	k: 1285	n:300000
Cons ci ratio: 5.093743e-03	ci left: 6.620729e-01	ci right 6.654572e-01	k: 199130	n:300000
KS ci ratio: 1.165483e-01	ci left: 3.537656e-03	ci right 3.978682e-03	k: 1126	n:300000
XPO1   300000 perm   99 sec   (3042 perm/sec)   p_kst 3.753333e-03   p_cons 6.637667e-01   p_joint 4.283333e-03

Joint ci ratio: 1.074601e-01	ci left: 4.044437e-03	ci right 4.506841e-03	k: 1324	n:310000
Cons ci ratio: 5.012747e-03	ci left: 6.619369e-01	ci right 6.652665e-01	k: 205717	n:310000
KS ci ratio: 1.147802e-01	ci left: 3.533174e-03	ci right 3.966507e-03	k: 1161	n:310000
XPO1   310000 perm   103 sec   (3005 perm/sec)   p_kst 3.745161e-03   p_cons 6.636032e-01   p_joint 4.270968e-03

Joint ci ratio: 1.057577e-01	ci left: 4.048841e-03	ci right 4.503959e-03	k: 1367	n:320000
Cons ci ratio: 4.932318e-03	ci left: 6.620976e-01	ci right 6.653744e-01	k: 212396	n:320000
KS ci ratio: 1.129481e-01	ci left: 3.538131e-03	ci right 3.964683e-03	k: 1199	n:320000
XPO1   320000 perm   108 sec   (2970 perm/sec)   p_kst 3.746875e-03   p_cons 6.637375e-01   p_joint 4.271875e-03

Joint ci ratio: 1.040967e-01	ci left: 4.055983e-03	ci right 4.504306e-03	k: 1411	n:330000
Cons ci ratio: 4.857123e-03	ci left: 6.621124e-01	ci right 6.653392e-01	k: 219030	n:330000
KS ci ratio: 1.110661e-01	ci left: 3.551678e-03	ci right 3.972262e-03	k: 1240	n:330000
XPO1   330000 perm   112 sec   (2935 perm/sec)   p_kst 3.757576e-03   p_cons 6.637273e-01   p_joint 4.275758e-03

Joint ci ratio: 1.037351e-01	ci left: 3.965327e-03	ci right 4.402013e-03	k: 1421	n:340000
Cons ci ratio: 4.786558e-03	ci left: 6.620061e-01	ci right 6.651853e-01	k: 225623	n:340000
KS ci ratio: 1.107146e-01	ci left: 3.470086e-03	ci right 3.879622e-03	k: 1248	n:340000
XPO1   340000 perm   118 sec   (2879 perm/sec)   p_kst 3.670588e-03   p_cons 6.635971e-01   p_joint 4.179412e-03

Joint ci ratio: 1.046316e-01	ci left: 3.785229e-03	ci right 4.205905e-03	k: 1397	n:350000
Cons ci ratio: 4.716022e-03	ci left: 6.621864e-01	ci right 6.653195e-01	k: 232314	n:350000
KS ci ratio: 1.095817e-01	ci left: 3.443177e-03	ci right 3.845110e-03	k: 1274	n:350000
XPO1   350000 perm   123 sec   (2840 perm/sec)   p_kst 3.640000e-03   p_cons 6.637543e-01   p_joint 3.991429e-03

Joint ci ratio: 1.032382e-01	ci left: 3.782895e-03	ci right 4.197374e-03	k: 1435	n:360000
Cons ci ratio: 4.651465e-03	ci left: 6.620734e-01	ci right 6.651629e-01	k: 238903	n:360000
KS ci ratio: 1.081910e-01	ci left: 3.436702e-03	ci right 3.832465e-03	k: 1307	n:360000
XPO1   360000 perm   128 sec   (2804 perm/sec)   p_kst 3.630556e-03   p_cons 6.636194e-01   p_joint 3.986111e-03

Joint ci ratio: 1.019685e-01	ci left: 3.775455e-03	ci right 4.183725e-03	k: 1471	n:370000
Cons ci ratio: 4.589099e-03	ci left: 6.620046e-01	ci right 6.650523e-01	k: 245506	n:370000
KS ci ratio: 1.068920e-01	ci left: 3.427978e-03	ci right 3.817698e-03	k: 1339	n:370000
XPO1   370000 perm   134 sec   (2753 perm/sec)   p_kst 3.618919e-03   p_cons 6.635297e-01   p_joint 3.975676e-03

Joint ci ratio: 1.005106e-01	ci left: 3.786394e-03	ci right 4.189648e-03	k: 1514	n:380000
Cons ci ratio: 4.526988e-03	ci left: 6.621558e-01	ci right 6.651628e-01	k: 252191	n:380000
KS ci ratio: 1.052544e-01	ci left: 3.445364e-03	ci right 3.830687e-03	k: 1381	n:380000
XPO1   380000 perm   141 sec   (2694 perm/sec)   p_kst 3.634211e-03   p_cons 6.636605e-01   p_joint 3.984211e-03

Joint ci ratio: 9.946660e-02	ci left: 3.769305e-03	ci right 4.166326e-03	k: 1546	n:390000
Cons ci ratio: 4.469589e-03	ci left: 6.620736e-01	ci right 6.650419e-01	k: 258788	n:390000
KS ci ratio: 1.040941e-01	ci left: 3.434426e-03	ci right 3.814033e-03	k: 1412	n:390000
XPO1   390000 perm   147 sec   (2650 perm/sec)   p_kst 3.620513e-03   p_cons 6.635590e-01   p_joint 3.964103e-03

Joint ci ratio: 9.581001e-02	ci left: 3.967768e-03	ci right 4.369467e-03	k: 1666	n:400000
Cons ci ratio: 4.414295e-03	ci left: 6.619982e-01	ci right 6.649294e-01	k: 265386	n:400000
KS ci ratio: 1.022981e-01	ci left: 3.470342e-03	ci right 3.846904e-03	k: 1462	n:400000
XPO1   400000 perm   152 sec   (2624 perm/sec)   p_kst 3.655000e-03   p_cons 6.634650e-01   p_joint 4.165000e-03

Joint ci ratio: 9.666279e-02	ci left: 3.801948e-03	ci right 4.190479e-03	k: 1637	n:410000
Cons ci ratio: 4.358145e-03	ci left: 6.622198e-01	ci right 6.651145e-01	k: 272104	n:410000
KS ci ratio: 1.012319e-01	ci left: 3.459384e-03	ci right 3.830612e-03	k: 1493	n:410000
XPO1   410000 perm   158 sec   (2595 perm/sec)   p_kst 3.641463e-03   p_cons 6.636683e-01   p_joint 3.992683e-03

Joint ci ratio: 9.558955e-02	ci left: 3.797402e-03	ci right 4.180919e-03	k: 1674	n:420000
Cons ci ratio: 4.307114e-03	ci left: 6.621163e-01	ci right 6.649766e-01	k: 278690	n:420000
KS ci ratio: 1.000011e-01	ci left: 3.462897e-03	ci right 3.829718e-03	k: 1530	n:420000
XPO1   420000 perm   163 sec   (2572 perm/sec)   p_kst 3.642857e-03   p_cons 6.635476e-01   p_joint 3.985714e-03

Joint ci ratio: 9.433026e-02	ci left: 3.811258e-03	ci right 4.190823e-03	k: 1719	n:430000
Cons ci ratio: 4.255816e-03	ci left: 6.622298e-01	ci right 6.650564e-01	k: 285367	n:430000
KS ci ratio: 9.875099e-02	ci left: 3.470808e-03	ci right 3.833605e-03	k: 1569	n:430000
XPO1   430000 perm   169 sec   (2550 perm/sec)   p_kst 3.648837e-03   p_cons 6.636442e-01   p_joint 3.997674e-03

Outputting figure to mutsig2_images.part000000000192/XPO1.3_3312_430000_0.0036488_0.66364_0.0039977.png
                gene_name: XPO1
               theta_stop: 0.099 
                    nperm: 430000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0042 

Current progress: 50 percent done.
XPO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
Cons ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
KS ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
XPO5   10000 perm   2 sec   (5318 perm/sec)   p_kst 3.954000e-01   p_cons 6.610000e-01   p_joint 5.203000e-01

Outputting figure to mutsig2_images.part000000000192/XPO5.3_3743_10000_0.3954_0.661_0.5203.png
                gene_name: XPO5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 52 percent done.
XPO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
Cons ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
KS ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
XPO6   10000 perm   2 sec   (5327 perm/sec)   p_kst 2.063000e-01   p_cons 6.730000e-02   p_joint 4.313000e-01

Joint ci ratio: 4.388200e-02	ci left: 2.788994e-01	ci right 2.914631e-01	k: 5703	n:20000
Cons ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
KS ci ratio: 5.439305e-02	ci left: 2.005120e-01	ci right 2.117736e-01	k: 4122	n:20000
XPO6   20000 perm   4 sec   (4820 perm/sec)   p_kst 2.061000e-01   p_cons 6.795000e-02   p_joint 2.851500e-01

Joint ci ratio: 4.009443e-02	ci left: 2.367647e-01	ci right 2.464853e-01	k: 7248	n:30000
Cons ci ratio: 8.465779e-02	ci left: 6.386939e-02	ci right 6.954820e-02	k: 2000	n:30000
KS ci ratio: 4.409106e-02	ci left: 2.039148e-01	ci right 2.131417e-01	k: 6255	n:30000
XPO6   30000 perm   7 sec   (4605 perm/sec)   p_kst 2.085000e-01   p_cons 6.666667e-02   p_joint 2.416000e-01

Outputting figure to mutsig2_images.part000000000192/XPO6.3_3474_30000_0.2085_0.066667_0.2416.png
                gene_name: XPO6
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 54 percent done.
XPO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
Cons ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
KS ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
XPO7   10000 perm   2 sec   (5287 perm/sec)   p_kst 1.874000e-01   p_cons 5.451000e-01   p_joint 2.366000e-01

Outputting figure to mutsig2_images.part000000000192/XPO7.3_3428_10000_0.1874_0.5451_0.2366.png
                gene_name: XPO7
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 56 percent done.
XPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
Cons ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
KS ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
XPR1   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.720000e-01   p_cons 3.721000e-01   p_joint 3.134000e-01

Outputting figure to mutsig2_images.part000000000192/XPR1.3_2151_10000_0.172_0.3721_0.3134.png
                gene_name: XPR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 57 percent done.
XYLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
Cons ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
KS ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
XYLB   10000 perm   2 sec   (6065 perm/sec)   p_kst 3.982000e-01   p_cons 8.443000e-01   p_joint 5.665000e-01

Outputting figure to mutsig2_images.part000000000192/XYLB.3_1687_10000_0.3982_0.8443_0.5665.png
                gene_name: XYLB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 59 percent done.
YES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 1.094871e-02	ci left: 9.224484e-01	ci right 9.327009e-01	k: 9277	n:10000
YES1   10000 perm   2 sec   (5900 perm/sec)   p_kst 9.277000e-01   p_cons 4.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YES1.3_1676_10000_0.9277_0.4723_1.png
                gene_name: YES1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
YIPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
KS ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
YIPF1   10000 perm   1 sec   (7022 perm/sec)   p_kst 5.155000e-01   p_cons 2.273000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000192/YIPF1.3_953_10000_0.5155_0.2273_0.4533.png
                gene_name: YIPF1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
YIPF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
YIPF5   10000 perm   2 sec   (6661 perm/sec)   p_kst 3.093000e-01   p_cons 5.114000e-01   p_joint 3.516000e-01

Outputting figure to mutsig2_images.part000000000192/YIPF5.3_794_10000_0.3093_0.5114_0.3516.png
                gene_name: YIPF5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 65 percent done.
YTHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
YTHDC1   10000 perm   2 sec   (5761 perm/sec)   p_kst 8.837000e-01   p_cons 2.021000e-01   p_joint 4.881000e-01

Outputting figure to mutsig2_images.part000000000192/YTHDC1.3_2252_10000_0.8837_0.2021_0.4881.png
                gene_name: YTHDC1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 67 percent done.
YTHDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
YTHDC2   10000 perm   2 sec   (4998 perm/sec)   p_kst 1.291000e-01   p_cons 1.550000e-02   p_joint 9.580000e-02

Joint ci ratio: 1.678361e-01	ci left: 2.431805e-02	ci right 2.882102e-02	k: 530	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 7.154726e-02	ci left: 1.258113e-01	ci right 1.351964e-01	k: 2609	n:20000
YTHDC2   20000 perm   4 sec   (4521 perm/sec)   p_kst 1.304500e-01   p_cons 1.420000e-02   p_joint 2.650000e-02

Joint ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
Cons ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
KS ci ratio: 5.921245e-02	ci left: 1.236795e-01	ci right 1.312595e-01	k: 3823	n:30000
YTHDC2   30000 perm   7 sec   (4330 perm/sec)   p_kst 1.274333e-01   p_cons 1.323333e-02   p_joint 2.526667e-02

Joint ci ratio: 1.197848e-01	ci left: 2.451102e-02	ci right 2.765829e-02	k: 1042	n:40000
Cons ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
KS ci ratio: 5.102001e-02	ci left: 1.253093e-01	ci right 1.318948e-01	k: 5143	n:40000
YTHDC2   40000 perm   9 sec   (4226 perm/sec)   p_kst 1.285750e-01   p_cons 1.332500e-02   p_joint 2.605000e-02

Joint ci ratio: 1.120328e-01	ci left: 2.255946e-02	ci right 2.525620e-02	k: 1194	n:50000
Cons ci ratio: 1.484154e-01	ci left: 1.273795e-02	ci right 1.479907e-02	k: 687	n:50000
KS ci ratio: 4.560528e-02	ci left: 1.257962e-01	ci right 1.316869e-01	k: 6436	n:50000
YTHDC2   50000 perm   12 sec   (4134 perm/sec)   p_kst 1.287200e-01   p_cons 1.374000e-02   p_joint 2.388000e-02

Joint ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
Cons ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
KS ci ratio: 4.159286e-02	ci left: 1.262615e-01	ci right 1.316411e-01	k: 7736	n:60000
YTHDC2   60000 perm   15 sec   (4040 perm/sec)   p_kst 1.289333e-01   p_cons 1.355000e-02   p_joint 1.898333e-02

Joint ci ratio: 1.040545e-01	ci left: 1.883646e-02	ci right 2.091789e-02	k: 1390	n:70000
Cons ci ratio: 1.259791e-01	ci left: 1.278273e-02	ci right 1.451507e-02	k: 954	n:70000
KS ci ratio: 3.840624e-02	ci left: 1.270493e-01	ci right 1.320386e-01	k: 9067	n:70000
YTHDC2   70000 perm   18 sec   (3959 perm/sec)   p_kst 1.295286e-01   p_cons 1.362857e-02   p_joint 1.985714e-02

Joint ci ratio: 1.028036e-01	ci left: 1.693157e-02	ci right 1.877863e-02	k: 1427	n:80000
Cons ci ratio: 1.172683e-01	ci left: 1.296661e-02	ci right 1.459394e-02	k: 1101	n:80000
KS ci ratio: 3.599449e-02	ci left: 1.267837e-01	ci right 1.314432e-01	k: 10328	n:80000
YTHDC2   80000 perm   21 sec   (3896 perm/sec)   p_kst 1.291000e-01   p_cons 1.376250e-02   p_joint 1.783750e-02

Joint ci ratio: 9.311604e-02	ci left: 1.841114e-02	ci right 2.022003e-02	k: 1737	n:90000
Cons ci ratio: 1.110967e-01	ci left: 1.288587e-02	ci right 1.441238e-02	k: 1227	n:90000
KS ci ratio: 3.402869e-02	ci left: 1.263091e-01	ci right 1.306927e-01	k: 11564	n:90000
YTHDC2   90000 perm   23 sec   (3837 perm/sec)   p_kst 1.284889e-01   p_cons 1.363333e-02   p_joint 1.930000e-02

Joint ci ratio: 8.885781e-02	ci left: 1.824105e-02	ci right 1.994700e-02	k: 1908	n:100000
Cons ci ratio: 1.049074e-01	ci left: 1.304711e-02	ci right 1.450129e-02	k: 1376	n:100000
KS ci ratio: 3.219770e-02	ci left: 1.270077e-01	ci right 1.311739e-01	k: 12908	n:100000
YTHDC2   100000 perm   26 sec   (3779 perm/sec)   p_kst 1.290800e-01   p_cons 1.376000e-02   p_joint 1.908000e-02

Joint ci ratio: 8.593842e-02	ci left: 1.776525e-02	ci right 1.936937e-02	k: 2041	n:110000
Cons ci ratio: 1.004532e-01	ci left: 1.296817e-02	ci right 1.434856e-02	k: 1501	n:110000
KS ci ratio: 3.074395e-02	ci left: 1.267805e-01	ci right 1.307481e-01	k: 14163	n:110000
YTHDC2   110000 perm   30 sec   (3722 perm/sec)   p_kst 1.287545e-01   p_cons 1.364545e-02   p_joint 1.855455e-02

Joint ci ratio: 7.818777e-02	ci left: 1.971386e-02	ci right 2.132609e-02	k: 2461	n:120000
Cons ci ratio: 9.601474e-02	ci left: 1.304178e-02	ci right 1.436521e-02	k: 1643	n:120000
KS ci ratio: 2.949059e-02	ci left: 1.264458e-01	ci right 1.302388e-01	k: 15400	n:120000
YTHDC2   120000 perm   33 sec   (3667 perm/sec)   p_kst 1.283333e-01   p_cons 1.369167e-02   p_joint 2.050833e-02

Outputting figure to mutsig2_images.part000000000192/YTHDC2.3_4409_120000_0.12833_0.013692_0.020508.png
                gene_name: YTHDC2
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 69 percent done.
YTHDF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
Cons ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
KS ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
YTHDF3   10000 perm   2 sec   (5950 perm/sec)   p_kst 3.630000e-02   p_cons 1.250000e-01   p_joint 4.070000e-02

Joint ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
Cons ci ratio: 7.250885e-02	ci left: 1.228577e-01	ci right 1.321509e-01	k: 2549	n:20000
KS ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
YTHDF3   20000 perm   4 sec   (5320 perm/sec)   p_kst 3.650000e-02   p_cons 1.274500e-01   p_joint 3.085000e-02

Joint ci ratio: 1.134068e-01	ci left: 3.612399e-02	ci right 4.049934e-02	k: 1148	n:30000
Cons ci ratio: 5.946220e-02	ci left: 1.227581e-01	ci right 1.303144e-01	k: 3795	n:30000
KS ci ratio: 1.168330e-01	ci left: 3.404990e-02	ci right 3.830720e-02	k: 1084	n:30000
YTHDF3   30000 perm   6 sec   (5064 perm/sec)   p_kst 3.613333e-02   p_cons 1.265000e-01   p_joint 3.826667e-02

Joint ci ratio: 9.915964e-02	ci left: 3.573254e-02	ci right 3.948497e-02	k: 1503	n:40000
Cons ci ratio: 5.155620e-02	ci left: 1.230099e-01	ci right 1.295445e-01	k: 5050	n:40000
KS ci ratio: 1.014600e-01	ci left: 3.414686e-02	ci right 3.782090e-02	k: 1438	n:40000
YTHDF3   40000 perm   8 sec   (4896 perm/sec)   p_kst 3.595000e-02   p_cons 1.262500e-01   p_joint 3.757500e-02

Joint ci ratio: 1.040555e-01	ci left: 2.616203e-02	ci right 2.905316e-02	k: 1379	n:50000
Cons ci ratio: 4.617510e-02	ci left: 1.230634e-01	ci right 1.289001e-01	k: 6298	n:50000
KS ci ratio: 8.981416e-02	ci left: 3.504930e-02	ci right 3.836477e-02	k: 1834	n:50000
YTHDF3   50000 perm   11 sec   (4759 perm/sec)   p_kst 3.668000e-02   p_cons 1.259600e-01   p_joint 2.758000e-02

Joint ci ratio: 6.156101e-02	ci left: 6.134801e-02	ci right 6.526103e-02	k: 3797	n:60000
Cons ci ratio: 4.413844e-02	ci left: 1.136131e-01	ci right 1.187575e-01	k: 6970	n:60000
KS ci ratio: 8.214389e-02	ci left: 3.506260e-02	ci right 3.808244e-02	k: 2193	n:60000
YTHDF3   60000 perm   13 sec   (4650 perm/sec)   p_kst 3.655000e-02   p_cons 1.161667e-01   p_joint 6.328333e-02

Outputting figure to mutsig2_images.part000000000192/YTHDF3.3_1777_60000_0.03655_0.11617_0.063283.png
                gene_name: YTHDF3
               theta_stop: 0.082 
                    nperm: 60000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 70 percent done.
ZAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
Cons ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
ZAK   10000 perm   2 sec   (5677 perm/sec)   p_kst 1.627000e-01   p_cons 8.319000e-01   p_joint 5.285000e-01

Outputting figure to mutsig2_images.part000000000192/ZAK.3_2864_10000_0.1627_0.8319_0.5285.png
                gene_name: ZAK
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 72 percent done.
ZBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
Cons ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
KS ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
ZBP1   10000 perm   2 sec   (6005 perm/sec)   p_kst 4.958000e-01   p_cons 3.494000e-01   p_joint 8.289000e-01

Outputting figure to mutsig2_images.part000000000192/ZBP1.3_1399_10000_0.4958_0.3494_0.8289.png
                gene_name: ZBP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 74 percent done.
XPA
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 76 percent done.
XPNPEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
KS ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
XPNPEP3   10000 perm   2 sec   (6324 perm/sec)   p_kst 3.822000e-01   p_cons 3.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPNPEP3.2_1564_10000_0.3822_0.3892_1.png
                gene_name: XPNPEP3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
XPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
Cons ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
KS ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
XPO4   10000 perm   2 sec   (5483 perm/sec)   p_kst 5.690000e-02   p_cons 2.057000e-01   p_joint 1.192000e-01

Joint ci ratio: 8.925935e-02	ci left: 8.401093e-02	ci right 9.190934e-02	k: 1758	n:20000
Cons ci ratio: 5.476134e-02	ci left: 1.983346e-01	ci right 2.095516e-01	k: 4078	n:20000
KS ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
XPO4   20000 perm   4 sec   (4984 perm/sec)   p_kst 5.935000e-02   p_cons 2.039000e-01   p_joint 8.790000e-02

Joint ci ratio: 5.904445e-02	ci left: 1.243048e-01	ci right 1.319007e-01	k: 3842	n:30000
Cons ci ratio: 4.493646e-02	ci left: 1.977666e-01	ci right 2.068911e-01	k: 6069	n:30000
KS ci ratio: 8.968531e-02	ci left: 5.717552e-02	ci right 6.257677e-02	k: 1795	n:30000
XPO4   30000 perm   6 sec   (4746 perm/sec)   p_kst 5.983333e-02   p_cons 2.023000e-01   p_joint 1.280667e-01

Outputting figure to mutsig2_images.part000000000192/XPO4.2_3548_30000_0.059833_0.2023_0.12807.png
                gene_name: XPO4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 80 percent done.
XRCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
Cons ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
KS ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
XRCC1   10000 perm   2 sec   (5595 perm/sec)   p_kst 9.672000e-01   p_cons 3.229000e-01   p_joint 4.922000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC1.2_1970_10000_0.9672_0.3229_0.4922.png
                gene_name: XRCC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 81 percent done.
XRRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
XRRA1   10000 perm   2 sec   (5881 perm/sec)   p_kst 5.469000e-01   p_cons 9.365000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XRRA1.2_2447_10000_0.5469_0.9365_1.png
                gene_name: XRRA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
YARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
Cons ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
KS ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
YARS2   10000 perm   2 sec   (6636 perm/sec)   p_kst 2.805000e-01   p_cons 3.995000e-01   p_joint 3.000000e-01

Outputting figure to mutsig2_images.part000000000192/YARS2.2_1454_10000_0.2805_0.3995_0.3.png
                gene_name: YARS2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 85 percent done.
YBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
YBX1   10000 perm   1 sec   (7018 perm/sec)   p_kst 8.502000e-01   p_cons 1.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YBX1.2_1003_10000_0.8502_0.1596_1.png
                gene_name: YBX1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
YME1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
KS ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
YME1L1   10000 perm   2 sec   (5895 perm/sec)   p_kst 6.612000e-01   p_cons 2.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YME1L1.2_2402_10000_0.6612_0.2888_1.png
                gene_name: YME1L1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
YPEL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
Cons ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
KS ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
YPEL3   10000 perm   1 sec   (6945 perm/sec)   p_kst 2.546000e-01   p_cons 1.300000e-01   p_joint 3.840000e-01

Joint ci ratio: 3.680235e-02	ci left: 3.552355e-01	ci right 3.686047e-01	k: 7238	n:20000
Cons ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
KS ci ratio: 4.623959e-02	ci left: 2.581983e-01	ci right 2.704703e-01	k: 5286	n:20000
YPEL3   20000 perm   3 sec   (6168 perm/sec)   p_kst 2.643000e-01   p_cons 1.313000e-01   p_joint 3.619000e-01

Outputting figure to mutsig2_images.part000000000192/YPEL3.2_490_20000_0.2643_0.1313_0.3619.png
                gene_name: YPEL3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 91 percent done.
YPEL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
Cons ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
KS ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
YPEL5   10000 perm   1 sec   (7323 perm/sec)   p_kst 9.160000e-02   p_cons 4.470000e-01   p_joint 8.664000e-01

Joint ci ratio: 9.055022e-03	ci left: 8.994258e-01	ci right 9.076565e-01	k: 18072	n:20000
Cons ci ratio: 3.097789e-02	ci left: 4.376966e-01	ci right 4.515195e-01	k: 8892	n:20000
KS ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
YPEL5   20000 perm   3 sec   (6483 perm/sec)   p_kst 9.225000e-02   p_cons 4.446000e-01   p_joint 9.036000e-01

Outputting figure to mutsig2_images.part000000000192/YPEL5.2_374_20000_0.09225_0.4446_0.9036.png
                gene_name: YPEL5
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 93 percent done.
YWHAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
YWHAG   10000 perm   1 sec   (6890 perm/sec)   p_kst 5.333000e-01   p_cons 2.277000e-01   p_joint 7.390000e-01

Outputting figure to mutsig2_images.part000000000192/YWHAG.2_752_10000_0.5333_0.2277_0.739.png
                gene_name: YWHAG
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 94 percent done.
YY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
KS ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
YY1   10000 perm   2 sec   (6505 perm/sec)   p_kst 9.405000e-01   p_cons 5.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YY1.2_1265_10000_0.9405_0.5279_1.png
                gene_name: YY1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
YY1AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
Cons ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KS ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
YY1AP1   10000 perm   2 sec   (6070 perm/sec)   p_kst 7.839000e-01   p_cons 8.512000e-01   p_joint 8.641000e-01

Outputting figure to mutsig2_images.part000000000192/YY1AP1.2_2495_10000_0.7839_0.8512_0.8641.png
                gene_name: YY1AP1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 98 percent done.
ZBTB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
Cons ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
KS ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
ZBTB16   10000 perm   2 sec   (6080 perm/sec)   p_kst 6.974000e-01   p_cons 6.968000e-01   p_joint 9.671000e-01

Outputting figure to mutsig2_images.part000000000192/ZBTB16.2_2046_10000_0.6974_0.6968_0.9671.png
                gene_name: ZBTB16
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000192
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 192 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1549>
Subject: Job 4422703: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1549>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000193> was used as the working directory.
Started at Wed Oct 24 18:11:25 2012
Results reported at Wed Oct 24 19:08:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000193.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000193.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 193  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000193.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3803.86 sec.
    Max Memory :      5297 MB
    Max Swap   :      7678 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
193
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 193
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 193: processing genes 17371 - 17461
Calculating significance of each gene.
Using projection method.
17371	ZBTB2	7.971598e-01
17372	ZBTB20	9.822973e-01
17373	ZBTB22	9.557298e-01
17374	ZBTB24	8.216449e-01
17375	ZBTB25	7.695805e-01
17376	ZBTB26	1
17377	ZBTB3	1
17378	ZBTB32	1
17379	ZBTB33	8.061747e-01
17380	ZBTB34	8.049071e-01
17381	ZBTB37	8.967520e-01
17382	ZBTB38	9.990859e-01
17383	ZBTB39	1
17384	ZBTB4	9.742390e-01
17385	ZBTB40	9.981714e-01
17386	ZBTB41	9.595765e-01
17387	ZBTB43	1
17388	ZBTB44	4.661700e-01
17389	ZBTB45	4.462135e-01
17390	ZBTB46	1
17391	ZBTB47	7.754586e-01
17392	ZBTB48	1
17393	ZBTB49	9.472417e-01
17394	ZBTB5	9.433060e-01
17395	ZBTB6	1
17396	ZBTB7A	1
17397	ZBTB7B	6.984049e-01
17398	ZBTB7C	9.029983e-01
17399	ZBTB8A	5.049115e-01
17400	ZBTB8OS	1.101075e-01
17401	ZBTB9	7.735801e-01
17402	ZC3H10	4.879443e-01
17403	ZC3H11A	2.485244e-01
17404	ZC3H12A	1
17405	ZC3H12B	8.935670e-01
17406	ZC3H12C	5.119012e-01
17407	ZC3H12D	1
17408	ZC3H13	9.807035e-01
17409	ZC3H14	4.272158e-01
17410	ZC3H15	1
17411	ZC3H18	9.950427e-01
17412	ZC3H3	9.492784e-01
17413	ZC3H4	7.167344e-01
17414	ZC3H6	9.807173e-01
17415	ZC3H7A	9.243519e-01
17416	ZC3H7B	1
17417	ZC3H8	1
17418	ZC3HAV1	5.515936e-01
17419	ZC3HAV1L	5.694764e-01
17420	ZC3HC1	1
17421	ZC4H2	8.676729e-02
17422	ZCCHC10	1
17423	ZCCHC11	9.093903e-01
17424	ZCCHC12	4.593316e-02
17425	ZCCHC13	3.737096e-02
17426	ZCCHC14	1
17427	ZCCHC16	9.197283e-03
17428	ZCCHC17	6.833950e-01
17429	ZCCHC18	1
17430	ZCCHC2	6.979556e-01
17431	ZCCHC24	1
17432	ZCCHC3	7.060254e-01
17433	ZCCHC4	8.957109e-01
17434	ZCCHC5	3.369107e-03
17435	ZCCHC6	9.964795e-01
17436	ZCCHC7	2.832571e-01
17437	ZCCHC8	4.949879e-01
17438	ZCCHC9	3.933351e-01
17439	ZCRB1	1
17440	ZCWPW1	9.328677e-01
17441	ZCWPW2	6.766514e-01
17442	ZDBF2	1
17443	ZDHHC1	1
17444	ZDHHC11	8.205498e-01
17445	ZDHHC12	1
17446	ZDHHC13	9.405144e-01
17447	ZDHHC14	6.847116e-01
17448	ZDHHC15	5.574556e-02
17449	ZDHHC16	7.968261e-01
17450	ZDHHC17	9.615482e-01
17451	ZDHHC18	1
17452	ZDHHC19	1
17453	ZDHHC2	6.366677e-01
17454	ZDHHC20	1
17455	ZDHHC21	1
17456	ZDHHC22	3.544245e-02
17457	ZDHHC23	5.129906e-01
17458	ZDHHC24	1
17459	ZDHHC3	4.160830e-01
17460	ZDHHC4	7.586883e-01
17461	ZDHHC5	9.510340e-01
Done

Running MutSig 2:
Scatter job 193: processing genes 17371 - 17461
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZDBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.002544e-02	ci left: 6.206514e-01	ci right 6.396727e-01	k: 6302	n:10000
Cons ci ratio: 1.010152e-02	ci left: 9.328874e-01	ci right 9.424556e-01	k: 9378	n:10000
KS ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
ZDBF2   10000 perm   3 sec   (3055 perm/sec)   p_kst 4.668000e-01   p_cons 9.378000e-01   p_joint 6.302000e-01

Outputting figure to mutsig2_images.part000000000193/ZDBF2.20_7077_10000_0.4668_0.9378_0.6302.png
                gene_name: ZDBF2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
ZC3H13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
Cons ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
KS ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
ZC3H13   10000 perm   3 sec   (3362 perm/sec)   p_kst 1.980000e-02   p_cons 3.628000e-01   p_joint 5.830000e-02

Joint ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
Cons ci ratio: 3.666729e-02	ci left: 3.569285e-01	ci right 3.703111e-01	k: 7272	n:20000
KS ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
ZC3H13   20000 perm   6 sec   (3145 perm/sec)   p_kst 1.895000e-02   p_cons 3.636000e-01   p_joint 3.075000e-02

Joint ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
Cons ci ratio: 3.138318e-02	ci left: 3.367304e-01	ci right 3.475001e-01	k: 10263	n:30000
KS ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
ZC3H13   30000 perm   10 sec   (3082 perm/sec)   p_kst 1.876667e-02   p_cons 3.421000e-01   p_joint 2.930000e-02

Joint ci ratio: 1.133624e-01	ci left: 2.737729e-02	ci right 3.069155e-02	k: 1160	n:40000
Cons ci ratio: 2.704234e-02	ci left: 3.397174e-01	ci right 3.490552e-01	k: 13775	n:40000
KS ci ratio: 1.426630e-01	ci left: 1.720201e-02	ci right 1.986854e-02	k: 740	n:40000
ZC3H13   40000 perm   13 sec   (3028 perm/sec)   p_kst 1.850000e-02   p_cons 3.443750e-01   p_joint 2.900000e-02

Joint ci ratio: 8.452647e-02	ci left: 3.949417e-02	ci right 4.299935e-02	k: 2061	n:50000
Cons ci ratio: 2.414461e-02	ci left: 3.410119e-01	ci right 3.493661e-01	k: 17259	n:50000
KS ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
ZC3H13   50000 perm   17 sec   (2986 perm/sec)   p_kst 1.948000e-02   p_cons 3.451800e-01   p_joint 4.122000e-02

Joint ci ratio: 7.935132e-02	ci left: 3.753034e-02	ci right 4.064778e-02	k: 2344	n:60000
Cons ci ratio: 2.200683e-02	ci left: 3.420766e-01	ci right 3.497050e-01	k: 20753	n:60000
KS ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
ZC3H13   60000 perm   20 sec   (2948 perm/sec)   p_kst 1.940000e-02   p_cons 3.458833e-01   p_joint 3.906667e-02

Joint ci ratio: 8.506575e-02	ci left: 2.818898e-02	ci right 3.070737e-02	k: 2060	n:70000
Cons ci ratio: 2.031148e-02	ci left: 3.437580e-01	ci right 3.508261e-01	k: 24310	n:70000
KS ci ratio: 1.052575e-01	ci left: 1.840498e-02	ci right 2.046370e-02	k: 1359	n:70000
ZC3H13   70000 perm   24 sec   (2910 perm/sec)   p_kst 1.941429e-02   p_cons 3.472857e-01   p_joint 2.942857e-02

Joint ci ratio: 7.766327e-02	ci left: 2.966260e-02	ci right 3.207158e-02	k: 2468	n:80000
Cons ci ratio: 1.897192e-02	ci left: 3.446486e-01	ci right 3.512624e-01	k: 27836	n:80000
KS ci ratio: 9.908827e-02	ci left: 1.823590e-02	ci right 2.014919e-02	k: 1534	n:80000
ZC3H13   80000 perm   28 sec   (2870 perm/sec)   p_kst 1.917500e-02   p_cons 3.479500e-01   p_joint 3.085000e-02

Outputting figure to mutsig2_images.part000000000193/ZC3H13.17_4759_80000_0.019175_0.34795_0.03085.png
                gene_name: ZC3H13
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 4 percent done.
ZCCHC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
Cons ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
KS ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
ZCCHC5   10000 perm   2 sec   (5105 perm/sec)   p_kst 4.899000e-01   p_cons 8.642000e-01   p_joint 7.850000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC5.16_1432_10000_0.4899_0.8642_0.785.png
                gene_name: ZCCHC5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 5 percent done.
ZC3H11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
Cons ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
KS ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
ZC3H11A   10000 perm   2 sec   (4832 perm/sec)   p_kst 5.251000e-01   p_cons 1.648000e-01   p_joint 3.809000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H11A.8_2497_10000_0.5251_0.1648_0.3809.png
                gene_name: ZC3H11A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 7 percent done.
ZC3H12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
Cons ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
KS ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
ZC3H12B   10000 perm   2 sec   (4911 perm/sec)   p_kst 6.005000e-01   p_cons 5.774000e-01   p_joint 6.956000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12B.8_2531_10000_0.6005_0.5774_0.6956.png
                gene_name: ZC3H12B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 9 percent done.
ZC3H12C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
KS ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
ZC3H12C   10000 perm   2 sec   (4849 perm/sec)   p_kst 2.314000e-01   p_cons 3.851000e-01   p_joint 3.581000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12C.8_2676_10000_0.2314_0.3851_0.3581.png
                gene_name: ZC3H12C
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 11 percent done.
ZC3H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
Cons ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
ZC3H4   10000 perm   2 sec   (4116 perm/sec)   p_kst 6.680000e-02   p_cons 6.300000e-02   p_joint 2.610000e-02

Joint ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
Cons ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
KS ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
ZC3H4   20000 perm   5 sec   (3787 perm/sec)   p_kst 6.755000e-02   p_cons 6.540000e-02   p_joint 5.170000e-02

Joint ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
Cons ci ratio: 8.486246e-02	ci left: 6.357533e-02	ci right 6.924233e-02	k: 1991	n:30000
KS ci ratio: 8.465779e-02	ci left: 6.386939e-02	ci right 6.954820e-02	k: 2000	n:30000
ZC3H4   30000 perm   8 sec   (3650 perm/sec)   p_kst 6.666667e-02   p_cons 6.636667e-02   p_joint 5.936667e-02

Outputting figure to mutsig2_images.part000000000193/ZC3H4.8_3968_30000_0.066667_0.066367_0.059367.png
                gene_name: ZC3H4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 13 percent done.
ZCCHC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
ZCCHC11   10000 perm   3 sec   (3711 perm/sec)   p_kst 7.460000e-02   p_cons 1.426000e-01   p_joint 5.550000e-02

Joint ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
Cons ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
KS ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
ZCCHC11   20000 perm   6 sec   (3420 perm/sec)   p_kst 7.560000e-02   p_cons 1.431500e-01   p_joint 6.270000e-02

Joint ci ratio: 8.506848e-02	ci left: 6.328128e-02	ci right 6.893644e-02	k: 1982	n:30000
Cons ci ratio: 5.536660e-02	ci left: 1.391884e-01	ci right 1.471475e-01	k: 4294	n:30000
KS ci ratio: 7.846694e-02	ci left: 7.377857e-02	ci right 7.983702e-02	k: 2303	n:30000
ZCCHC11   30000 perm   9 sec   (3288 perm/sec)   p_kst 7.676667e-02   p_cons 1.431333e-01   p_joint 6.606667e-02

Outputting figure to mutsig2_images.part000000000193/ZCCHC11.8_5054_30000_0.076767_0.14313_0.066067.png
                gene_name: ZCCHC11
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.069 

Current progress: 15 percent done.
ZCCHC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
KS ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
ZCCHC16   10000 perm   2 sec   (5630 perm/sec)   p_kst 6.357000e-01   p_cons 6.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC16.8_937_10000_0.6357_0.6672_1.png
                gene_name: ZCCHC16
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ZBTB7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
ZBTB7B   10000 perm   2 sec   (5344 perm/sec)   p_kst 2.317000e-01   p_cons 8.471000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB7B.7_1628_10000_0.2317_0.8471_0.3499.png
                gene_name: ZBTB7B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 18 percent done.
ZBTB20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
Cons ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
ZBTB20   10000 perm   2 sec   (5079 perm/sec)   p_kst 6.422000e-01   p_cons 5.880000e-01   p_joint 9.172000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB20.6_2242_10000_0.6422_0.588_0.9172.png
                gene_name: ZBTB20
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 20 percent done.
ZBTB38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
Cons ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
KS ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
ZBTB38   10000 perm   2 sec   (4554 perm/sec)   p_kst 2.919000e-01   p_cons 5.330000e-01   p_joint 3.596000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB38.6_3592_10000_0.2919_0.533_0.3596.png
                gene_name: ZBTB38
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
ZC3H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
Cons ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
KS ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
ZC3H6   10000 perm   2 sec   (5043 perm/sec)   p_kst 4.684000e-01   p_cons 9.464000e-01   p_joint 7.909000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H6.6_3618_10000_0.4684_0.9464_0.7909.png
                gene_name: ZC3H6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 24 percent done.
ZC3HAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
ZC3HAV1   10000 perm   2 sec   (5042 perm/sec)   p_kst 2.371000e-01   p_cons 6.913000e-01   p_joint 4.290000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3HAV1.6_2765_10000_0.2371_0.6913_0.429.png
                gene_name: ZC3HAV1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 25 percent done.
ZCCHC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
Cons ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
ZCCHC12   10000 perm   2 sec   (5237 perm/sec)   p_kst 8.982000e-01   p_cons 3.219000e-01   p_joint 8.740000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC12.6_1213_10000_0.8982_0.3219_0.874.png
                gene_name: ZCCHC12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 27 percent done.
ZC3H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
ZC3H14   10000 perm   2 sec   (5537 perm/sec)   p_kst 7.502000e-01   p_cons 8.780000e-02   p_joint 2.989000e-01

Joint ci ratio: 4.422347e-02	ci left: 2.757708e-01	ci right 2.882926e-01	k: 5640	n:20000
Cons ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
KS ci ratio: 1.499306e-02	ci left: 7.677859e-01	ci right 7.794345e-01	k: 15473	n:20000
ZC3H14   20000 perm   4 sec   (4897 perm/sec)   p_kst 7.736500e-01   p_cons 8.760000e-02   p_joint 2.820000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H14.5_2668_20000_0.77365_0.0876_0.282.png
                gene_name: ZC3H14
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
ZC3H18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
Cons ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
KS ci ratio: 1.389693e-02	ci left: 8.820651e-01	ci right 8.945077e-01	k: 8884	n:10000
ZC3H18   10000 perm   2 sec   (5209 perm/sec)   p_kst 8.884000e-01   p_cons 3.292000e-01   p_joint 7.393000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H18.5_2930_10000_0.8884_0.3292_0.7393.png
                gene_name: ZC3H18
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 31 percent done.
ZC3H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
ZC3H3   10000 perm   2 sec   (4859 perm/sec)   p_kst 2.732000e-01   p_cons 8.655000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H3.5_2895_10000_0.2732_0.8655_0.4522.png
                gene_name: ZC3H3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 33 percent done.
ZDHHC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
ZDHHC15   10000 perm   2 sec   (5685 perm/sec)   p_kst 7.204000e-01   p_cons 3.420000e-01   p_joint 6.739000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC15.5_1138_10000_0.7204_0.342_0.6739.png
                gene_name: ZDHHC15
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 35 percent done.
ZBTB22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
KS ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
ZBTB22   10000 perm   2 sec   (5640 perm/sec)   p_kst 8.600000e-03   p_cons 3.270000e-02   p_joint 1.230000e-02

Joint ci ratio: 2.976019e-01	ci left: 7.320842e-03	ci right 9.925044e-03	k: 171	n:20000
Cons ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
KS ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
ZBTB22   20000 perm   4 sec   (4979 perm/sec)   p_kst 8.200000e-03   p_cons 3.120000e-02   p_joint 8.550000e-03

Joint ci ratio: 3.090706e-01	ci left: 4.509917e-03	ci right 6.188071e-03	k: 159	n:30000
Cons ci ratio: 1.287635e-01	ci left: 2.803403e-02	ci right 3.192436e-02	k: 898	n:30000
KS ci ratio: 2.597662e-01	ci left: 6.554965e-03	ci right 8.542192e-03	k: 225	n:30000
ZBTB22   30000 perm   6 sec   (4756 perm/sec)   p_kst 7.500000e-03   p_cons 2.993333e-02   p_joint 5.300000e-03

Joint ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
Cons ci ratio: 1.126647e-01	ci left: 2.771767e-02	ci right 3.105112e-02	k: 1174	n:40000
KS ci ratio: 2.277745e-01	ci left: 6.512771e-03	ci right 8.209927e-03	k: 293	n:40000
ZBTB22   40000 perm   9 sec   (4597 perm/sec)   p_kst 7.325000e-03   p_cons 2.935000e-02   p_joint 1.182500e-02

Joint ci ratio: 1.710055e-01	ci left: 9.510141e-03	ci right 1.130738e-02	k: 519	n:50000
Cons ci ratio: 1.011526e-01	ci left: 2.768309e-02	ci right 3.065191e-02	k: 1457	n:50000
KS ci ratio: 2.097031e-01	ci left: 6.212122e-03	ci right 7.685996e-03	k: 346	n:50000
ZBTB22   50000 perm   11 sec   (4478 perm/sec)   p_kst 6.920000e-03   p_cons 2.914000e-02   p_joint 1.038000e-02

Joint ci ratio: 1.679277e-01	ci left: 8.243851e-03	ci right 9.770876e-03	k: 539	n:60000
Cons ci ratio: 9.224713e-02	ci left: 2.786729e-02	ci right 3.057851e-02	k: 1752	n:60000
KS ci ratio: 1.922240e-01	ci left: 6.221507e-03	ci right 7.560192e-03	k: 412	n:60000
ZBTB22   60000 perm   14 sec   (4367 perm/sec)   p_kst 6.866667e-03   p_cons 2.920000e-02   p_joint 8.983333e-03

Joint ci ratio: 1.724357e-01	ci left: 6.696398e-03	ci right 7.973522e-03	k: 512	n:70000
Cons ci ratio: 8.639201e-02	ci left: 2.733571e-02	ci right 2.981786e-02	k: 1999	n:70000
KS ci ratio: 1.796305e-01	ci left: 6.149982e-03	ci right 7.377155e-03	k: 472	n:70000
ZBTB22   70000 perm   16 sec   (4268 perm/sec)   p_kst 6.742857e-03   p_cons 2.855714e-02   p_joint 7.314286e-03

Joint ci ratio: 1.747580e-01	ci left: 5.703649e-03	ci right 6.807618e-03	k: 499	n:80000
Cons ci ratio: 8.071637e-02	ci left: 2.748037e-02	ci right 2.980398e-02	k: 2290	n:80000
KS ci ratio: 1.684329e-01	ci left: 6.158372e-03	ci right 7.302841e-03	k: 537	n:80000
ZBTB22   80000 perm   19 sec   (4172 perm/sec)   p_kst 6.712500e-03   p_cons 2.862500e-02   p_joint 6.237500e-03

Joint ci ratio: 1.835091e-01	ci left: 4.581453e-03	ci right 5.517552e-03	k: 453	n:90000
Cons ci ratio: 7.642705e-02	ci left: 2.731351e-02	ci right 2.949481e-02	k: 2555	n:90000
KS ci ratio: 1.565061e-01	ci left: 6.380250e-03	ci right 7.474115e-03	k: 622	n:90000
ZBTB22   90000 perm   22 sec   (4097 perm/sec)   p_kst 6.911111e-03   p_cons 2.838889e-02   p_joint 5.033333e-03

Joint ci ratio: 1.852021e-01	ci left: 4.046895e-03	ci right 4.882249e-03	k: 445	n:100000
Cons ci ratio: 7.254455e-02	ci left: 2.733984e-02	ci right 2.940763e-02	k: 2836	n:100000
KS ci ratio: 1.484988e-01	ci left: 6.405913e-03	ci right 7.442997e-03	k: 691	n:100000
ZBTB22   100000 perm   25 sec   (4020 perm/sec)   p_kst 6.910000e-03   p_cons 2.836000e-02   p_joint 4.450000e-03

Joint ci ratio: 1.946679e-01	ci left: 3.315196e-03	ci right 4.038633e-03	k: 403	n:110000
Cons ci ratio: 6.898335e-02	ci left: 2.753352e-02	ci right 2.950963e-02	k: 3136	n:110000
KS ci ratio: 1.413266e-01	ci left: 6.454391e-03	ci right 7.444601e-03	k: 763	n:110000
ZBTB22   110000 perm   28 sec   (3951 perm/sec)   p_kst 6.936364e-03   p_cons 2.850909e-02   p_joint 3.663636e-03

Joint ci ratio: 1.939766e-01	ci left: 3.062674e-03	ci right 3.728349e-03	k: 406	n:120000
Cons ci ratio: 6.623788e-02	ci left: 2.741819e-02	ci right 2.930469e-02	k: 3402	n:120000
KS ci ratio: 1.360894e-01	ci left: 6.399163e-03	ci right 7.341572e-03	k: 823	n:120000
ZBTB22   120000 perm   31 sec   (3865 perm/sec)   p_kst 6.858333e-03   p_cons 2.835000e-02   p_joint 3.383333e-03

Joint ci ratio: 1.916544e-01	ci left: 2.900269e-03	ci right 3.522217e-03	k: 416	n:130000
Cons ci ratio: 6.351163e-02	ci left: 2.756429e-02	ci right 2.937990e-02	k: 3700	n:130000
KS ci ratio: 1.303590e-01	ci left: 6.457196e-03	ci right 7.365008e-03	k: 897	n:130000
ZBTB22   130000 perm   34 sec   (3791 perm/sec)   p_kst 6.900000e-03   p_cons 2.846154e-02   p_joint 3.200000e-03

Joint ci ratio: 1.849054e-01	ci left: 2.904102e-03	ci right 3.502481e-03	k: 447	n:140000
Cons ci ratio: 6.123846e-02	ci left: 2.756422e-02	ci right 2.931253e-02	k: 3980	n:140000
KS ci ratio: 1.250376e-01	ci left: 6.535333e-03	ci right 7.413844e-03	k: 975	n:140000
ZBTB22   140000 perm   38 sec   (3729 perm/sec)   p_kst 6.964286e-03   p_cons 2.842857e-02   p_joint 3.192857e-03

Joint ci ratio: 1.889879e-01	ci left: 2.589715e-03	ci right 3.136449e-03	k: 428	n:150000
Cons ci ratio: 5.912175e-02	ci left: 2.763087e-02	ci right 2.932076e-02	k: 4270	n:150000
KS ci ratio: 1.196347e-01	ci left: 6.681318e-03	ci right 7.537900e-03	k: 1065	n:150000
ZBTB22   150000 perm   41 sec   (3673 perm/sec)   p_kst 7.100000e-03   p_cons 2.846667e-02   p_joint 2.853333e-03

Joint ci ratio: 1.337808e-01	ci left: 4.980299e-03	ci right 5.700305e-03	k: 853	n:160000
Cons ci ratio: 5.719746e-02	ci left: 2.770243e-02	ci right 2.933972e-02	k: 4562	n:160000
KS ci ratio: 1.155327e-01	ci left: 6.730843e-03	ci right 7.562167e-03	k: 1142	n:160000
ZBTB22   160000 perm   44 sec   (3613 perm/sec)   p_kst 7.137500e-03   p_cons 2.851250e-02   p_joint 5.331250e-03

Joint ci ratio: 1.402164e-01	ci left: 4.255482e-03	ci right 4.902768e-03	k: 777	n:170000
Cons ci ratio: 5.539678e-02	ci left: 2.781858e-02	ci right 2.940932e-02	k: 4863	n:170000
KS ci ratio: 1.125714e-01	ci left: 6.683489e-03	ci right 7.486400e-03	k: 1203	n:170000
ZBTB22   170000 perm   48 sec   (3557 perm/sec)   p_kst 7.076471e-03   p_cons 2.860588e-02   p_joint 4.570588e-03

Joint ci ratio: 1.392491e-01	ci left: 4.078015e-03	ci right 4.693671e-03	k: 788	n:180000
Cons ci ratio: 5.382050e-02	ci left: 2.785675e-02	ci right 2.940293e-02	k: 5152	n:180000
KS ci ratio: 1.100460e-01	ci left: 6.614620e-03	ci right 7.390274e-03	k: 1259	n:180000
ZBTB22   180000 perm   52 sec   (3495 perm/sec)   p_kst 6.994444e-03   p_cons 2.862222e-02   p_joint 4.377778e-03

Joint ci ratio: 1.383874e-01	ci left: 3.914163e-03	ci right 4.501123e-03	k: 798	n:190000
Cons ci ratio: 5.248085e-02	ci left: 2.777716e-02	ci right 2.927938e-02	k: 5419	n:190000
KS ci ratio: 1.067880e-01	ci left: 6.665887e-03	ci right 7.422955e-03	k: 1337	n:190000
ZBTB22   190000 perm   55 sec   (3442 perm/sec)   p_kst 7.036842e-03   p_cons 2.852105e-02   p_joint 4.200000e-03

Joint ci ratio: 1.366948e-01	ci left: 3.815000e-03	ci right 4.379522e-03	k: 818	n:200000
Cons ci ratio: 5.121332e-02	ci left: 2.773065e-02	ci right 2.919306e-02	k: 5691	n:200000
KS ci ratio: 1.045871e-01	ci left: 6.610048e-03	ci right 7.344351e-03	k: 1394	n:200000
ZBTB22   200000 perm   59 sec   (3391 perm/sec)   p_kst 6.970000e-03   p_cons 2.845500e-02   p_joint 4.090000e-03

Joint ci ratio: 1.104992e-01	ci left: 5.627841e-03	ci right 6.290670e-03	k: 1250	n:210000
Cons ci ratio: 5.002477e-02	ci left: 2.769838e-02	ci right 2.912421e-02	k: 5965	n:210000
KS ci ratio: 1.019877e-01	ci left: 6.629288e-03	ci right 7.346327e-03	k: 1466	n:210000
ZBTB22   210000 perm   63 sec   (3343 perm/sec)   p_kst 6.980952e-03   p_cons 2.840476e-02   p_joint 5.952381e-03

Joint ci ratio: 1.516665e-01	ci left: 2.797632e-03	ci right 3.261070e-03	k: 665	n:220000
Cons ci ratio: 4.893144e-02	ci left: 2.765143e-02	ci right 2.904285e-02	k: 6235	n:220000
KS ci ratio: 1.017946e-01	ci left: 6.354488e-03	ci right 7.040424e-03	k: 1472	n:220000
ZBTB22   220000 perm   67 sec   (3294 perm/sec)   p_kst 6.690909e-03   p_cons 2.834091e-02   p_joint 3.022727e-03

Joint ci ratio: 1.483619e-01	ci left: 2.801535e-03	ci right 3.254611e-03	k: 695	n:230000
Cons ci ratio: 4.774842e-02	ci left: 2.778936e-02	ci right 2.915299e-02	k: 6547	n:230000
KS ci ratio: 9.994844e-02	ci left: 6.311297e-03	ci right 6.979489e-03	k: 1527	n:230000
ZBTB22   230000 perm   71 sec   (3250 perm/sec)   p_kst 6.639130e-03   p_cons 2.846522e-02   p_joint 3.021739e-03

Joint ci ratio: 1.470008e-01	ci left: 2.736963e-03	ci right 3.175178e-03	k: 708	n:240000
Cons ci ratio: 4.668578e-02	ci left: 2.787086e-02	ci right 2.920723e-02	k: 6848	n:240000
KS ci ratio: 9.810561e-02	ci left: 6.284003e-03	ci right 6.936332e-03	k: 1585	n:240000
ZBTB22   240000 perm   75 sec   (3205 perm/sec)   p_kst 6.604167e-03   p_cons 2.853333e-02   p_joint 2.950000e-03

Joint ci ratio: 1.434999e-01	ci left: 2.762399e-03	ci right 3.193252e-03	k: 743	n:250000
Cons ci ratio: 4.568778e-02	ci left: 2.795010e-02	ci right 2.926086e-02	k: 7150	n:250000
KS ci ratio: 9.659794e-02	ci left: 6.227764e-03	ci right 6.863757e-03	k: 1635	n:250000
ZBTB22   250000 perm   79 sec   (3161 perm/sec)   p_kst 6.540000e-03   p_cons 2.860000e-02   p_joint 2.972000e-03

Joint ci ratio: 1.428358e-01	ci left: 2.682104e-03	ci right 3.098331e-03	k: 750	n:260000
Cons ci ratio: 4.474805e-02	ci left: 2.802733e-02	ci right 2.931398e-02	k: 7453	n:260000
KS ci ratio: 9.504425e-02	ci left: 6.190944e-03	ci right 6.812441e-03	k: 1689	n:260000
ZBTB22   260000 perm   83 sec   (3120 perm/sec)   p_kst 6.496154e-03   p_cons 2.866538e-02   p_joint 2.884615e-03

Joint ci ratio: 1.429390e-01	ci left: 2.579185e-03	ci right 2.979754e-03	k: 749	n:270000
Cons ci ratio: 4.392236e-02	ci left: 2.802580e-02	ci right 2.928805e-02	k: 7736	n:270000
KS ci ratio: 9.308090e-02	ci left: 6.222048e-03	ci right 6.833062e-03	k: 1761	n:270000
ZBTB22   270000 perm   88 sec   (3081 perm/sec)   p_kst 6.522222e-03   p_cons 2.865185e-02   p_joint 2.774074e-03

Joint ci ratio: 1.407976e-01	ci left: 2.566297e-03	ci right 2.958393e-03	k: 772	n:280000
Cons ci ratio: 4.317678e-02	ci left: 2.797865e-02	ci right 2.921685e-02	k: 8006	n:280000
KS ci ratio: 9.143536e-02	ci left: 6.223130e-03	ci right 6.822867e-03	k: 1825	n:280000
ZBTB22   280000 perm   92 sec   (3041 perm/sec)   p_kst 6.517857e-03   p_cons 2.859286e-02   p_joint 2.757143e-03

Joint ci ratio: 1.146662e-01	ci left: 3.783568e-03	ci right 4.247120e-03	k: 1163	n:290000
Cons ci ratio: 4.231555e-02	ci left: 2.813286e-02	ci right 2.935244e-02	k: 8334	n:290000
KS ci ratio: 8.930514e-02	ci left: 6.305141e-03	ci right 6.897887e-03	k: 1913	n:290000
ZBTB22   290000 perm   97 sec   (3004 perm/sec)   p_kst 6.596552e-03   p_cons 2.873793e-02   p_joint 4.010345e-03

Joint ci ratio: 1.136012e-01	ci left: 3.728683e-03	ci right 4.180982e-03	k: 1185	n:300000
Cons ci ratio: 4.157061e-02	ci left: 2.818793e-02	ci right 2.938787e-02	k: 8635	n:300000
KS ci ratio: 8.749327e-02	ci left: 6.355748e-03	ci right 6.940510e-03	k: 1993	n:300000
ZBTB22   300000 perm   101 sec   (2967 perm/sec)   p_kst 6.643333e-03   p_cons 2.878333e-02   p_joint 3.950000e-03

Joint ci ratio: 1.133688e-01	ci left: 3.624063e-03	ci right 4.062712e-03	k: 1190	n:310000
Cons ci ratio: 4.081432e-02	ci left: 2.830668e-02	ci right 2.948924e-02	k: 8957	n:310000
KS ci ratio: 8.601731e-02	ci left: 6.368478e-03	ci right 6.944029e-03	k: 2062	n:310000
ZBTB22   310000 perm   106 sec   (2928 perm/sec)   p_kst 6.651613e-03   p_cons 2.889355e-02   p_joint 3.838710e-03

Joint ci ratio: 1.108356e-01	ci left: 3.677873e-03	ci right 4.112438e-03	k: 1245	n:320000
Cons ci ratio: 4.019609e-02	ci left: 2.828204e-02	ci right 2.944526e-02	k: 9235	n:320000
KS ci ratio: 8.065231e-02	ci left: 7.032458e-03	ci right 7.626516e-03	k: 2344	n:320000
ZBTB22   320000 perm   111 sec   (2891 perm/sec)   p_kst 7.325000e-03   p_cons 2.885937e-02   p_joint 3.890625e-03

Joint ci ratio: 1.149423e-01	ci left: 3.310191e-03	ci right 3.716786e-03	k: 1158	n:330000
Cons ci ratio: 3.958585e-02	ci left: 2.828603e-02	ci right 2.943135e-02	k: 9522	n:330000
KS ci ratio: 7.909670e-02	ci left: 7.095552e-03	ci right 7.682846e-03	k: 2437	n:330000
ZBTB22   330000 perm   116 sec   (2855 perm/sec)   p_kst 7.384848e-03   p_cons 2.885455e-02   p_joint 3.509091e-03

Joint ci ratio: 1.146508e-01	ci left: 3.229965e-03	ci right 3.625632e-03	k: 1164	n:340000
Cons ci ratio: 3.899441e-02	ci left: 2.830157e-02	ci right 2.943001e-02	k: 9813	n:340000
KS ci ratio: 7.792294e-02	ci left: 7.100233e-03	ci right 7.678798e-03	k: 2511	n:340000
ZBTB22   340000 perm   121 sec   (2820 perm/sec)   p_kst 7.385294e-03   p_cons 2.886176e-02   p_joint 3.423529e-03

Joint ci ratio: 1.162697e-01	ci left: 3.048876e-03	ci right 3.427994e-03	k: 1132	n:350000
Cons ci ratio: 3.842478e-02	ci left: 2.832200e-02	ci right 2.943439e-02	k: 10106	n:350000
KS ci ratio: 7.687484e-02	ci left: 7.090695e-03	ci right 7.660364e-03	k: 2580	n:350000
ZBTB22   350000 perm   126 sec   (2785 perm/sec)   p_kst 7.371429e-03   p_cons 2.887429e-02   p_joint 3.234286e-03

Joint ci ratio: 1.147606e-01	ci left: 3.045110e-03	ci right 3.418513e-03	k: 1162	n:360000
Cons ci ratio: 3.790382e-02	ci left: 2.830563e-02	ci right 2.940198e-02	k: 10386	n:360000
KS ci ratio: 7.568113e-02	ci left: 7.117168e-03	ci right 7.679694e-03	k: 2662	n:360000
ZBTB22   360000 perm   131 sec   (2753 perm/sec)   p_kst 7.394444e-03   p_cons 2.885000e-02   p_joint 3.227778e-03

Joint ci ratio: 1.125542e-01	ci left: 3.083603e-03	ci right 3.453974e-03	k: 1208	n:370000
Cons ci ratio: 3.734944e-02	ci left: 2.837058e-02	ci right 2.945303e-02	k: 10696	n:370000
KS ci ratio: 7.476119e-02	ci left: 7.099833e-03	ci right 7.653870e-03	k: 2728	n:370000
ZBTB22   370000 perm   136 sec   (2720 perm/sec)   p_kst 7.372973e-03   p_cons 2.890811e-02   p_joint 3.264865e-03

Joint ci ratio: 8.371590e-02	ci left: 5.496596e-03	ci right 5.979409e-03	k: 2179	n:380000
Cons ci ratio: 3.684110e-02	ci left: 2.839832e-02	ci right 2.946677e-02	k: 10993	n:380000
KS ci ratio: 7.398072e-02	ci left: 7.062783e-03	ci right 7.607928e-03	k: 2786	n:380000
ZBTB22   380000 perm   141 sec   (2689 perm/sec)   p_kst 7.331579e-03   p_cons 2.892895e-02   p_joint 5.734211e-03

Outputting figure to mutsig2_images.part000000000193/ZBTB22.4_1909_380000_0.0073316_0.028929_0.0057342.png
                gene_name: ZBTB22
               theta_stop: 0.084 
                    nperm: 380000 
                     p_ks: 0.0073 
        ci_ks_bounds_left: 0.0071 
       ci_ks_bounds_right: 0.0076 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0060 

Current progress: 36 percent done.
ZBTB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
Cons ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
ZBTB41   10000 perm   2 sec   (5507 perm/sec)   p_kst 3.309000e-01   p_cons 8.256000e-01   p_joint 6.856000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB41.4_2770_10000_0.3309_0.8256_0.6856.png
                gene_name: ZBTB41
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 38 percent done.
ZBTB45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
ZBTB45   10000 perm   2 sec   (6109 perm/sec)   p_kst 5.513000e-01   p_cons 6.297000e-01   p_joint 7.665000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB45.4_1544_10000_0.5513_0.6297_0.7665.png
                gene_name: ZBTB45
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 40 percent done.
ZCCHC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
Cons ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
KS ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
ZCCHC7   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.209000e-01   p_cons 1.056000e-01   p_joint 1.997000e-01

Joint ci ratio: 6.106238e-02	ci left: 1.656075e-01	ci right 1.760884e-01	k: 3416	n:20000
Cons ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
KS ci ratio: 5.208558e-02	ci left: 2.149188e-01	ci right 2.264625e-01	k: 4413	n:20000
ZCCHC7   20000 perm   4 sec   (5090 perm/sec)   p_kst 2.206500e-01   p_cons 1.022000e-01   p_joint 1.708000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC7.4_1664_20000_0.22065_0.1022_0.1708.png
                gene_name: ZCCHC7
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 42 percent done.
ZCCHC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
Cons ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KS ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
ZCCHC8   10000 perm   2 sec   (5484 perm/sec)   p_kst 2.626000e-01   p_cons 7.002000e-01   p_joint 5.170000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC8.4_2180_10000_0.2626_0.7002_0.517.png
                gene_name: ZCCHC8
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 44 percent done.
ZBTB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
Cons ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
KS ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
ZBTB3   10000 perm   2 sec   (6093 perm/sec)   p_kst 2.965000e-01   p_cons 4.653000e-01   p_joint 3.791000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB3.3_1733_10000_0.2965_0.4653_0.3791.png
                gene_name: ZBTB3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
ZBTB44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
Cons ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
ZBTB44   10000 perm   2 sec   (6411 perm/sec)   p_kst 3.787000e-01   p_cons 4.162000e-01   p_joint 4.290000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB44.3_1382_10000_0.3787_0.4162_0.429.png
                gene_name: ZBTB44
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 47 percent done.
ZBTB8OS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.249880e-02	ci left: 5.828939e-01	ci right 6.022522e-01	k: 5926	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
ZBTB8OS   10000 perm   2 sec   (6600 perm/sec)   p_kst 9.349000e-01   p_cons 5.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB8OS.3_568_10000_0.9349_0.5926_1.png
                gene_name: ZBTB8OS
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ZC3H10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
ZC3H10   10000 perm   2 sec   (6400 perm/sec)   p_kst 4.221000e-01   p_cons 7.666000e-01   p_joint 7.616000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H10.3_1309_10000_0.4221_0.7666_0.7616.png
                gene_name: ZC3H10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 51 percent done.
ZC3H7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
ZC3H7A   10000 perm   2 sec   (5179 perm/sec)   p_kst 9.481000e-01   p_cons 8.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H7A.3_3004_10000_0.9481_0.811_1.png
                gene_name: ZC3H7A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ZC3H7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
ZC3H7B   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.473000e-01   p_cons 3.611000e-01   p_joint 4.714000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H7B.3_3022_10000_0.3473_0.3611_0.4714.png
                gene_name: ZC3H7B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 55 percent done.
ZC4H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
ZC4H2   10000 perm   2 sec   (6549 perm/sec)   p_kst 2.869000e-01   p_cons 3.680000e-01   p_joint 3.896000e-01

Outputting figure to mutsig2_images.part000000000193/ZC4H2.3_714_10000_0.2869_0.368_0.3896.png
                gene_name: ZC4H2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 56 percent done.
ZCCHC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.557553e-02	ci left: 6.923226e-01	ci right 7.103600e-01	k: 7014	n:10000
Cons ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
KS ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
ZCCHC13   10000 perm   2 sec   (6650 perm/sec)   p_kst 5.788000e-01   p_cons 3.981000e-01   p_joint 7.014000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC13.3_505_10000_0.5788_0.3981_0.7014.png
                gene_name: ZCCHC13
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 58 percent done.
ZCCHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
Cons ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
KS ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
ZCCHC2   10000 perm   2 sec   (4971 perm/sec)   p_kst 3.701000e-01   p_cons 4.646000e-01   p_joint 4.706000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC2.3_3593_10000_0.3701_0.4646_0.4706.png
                gene_name: ZCCHC2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
ZCCHC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.653175e-02	ci left: 3.154251e-01	ci right 3.338771e-01	k: 3246	n:10000
Cons ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
KS ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
ZCCHC6   10000 perm   2 sec   (4678 perm/sec)   p_kst 4.046000e-01   p_cons 1.535000e-01   p_joint 3.246000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC6.3_4592_10000_0.4046_0.1535_0.3246.png
                gene_name: ZCCHC6
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 62 percent done.
ZDHHC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
KS ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
ZDHHC11   10000 perm   2 sec   (6052 perm/sec)   p_kst 4.196000e-01   p_cons 6.387000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC11.3_1287_10000_0.4196_0.6387_0.9841.png
                gene_name: ZDHHC11
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 64 percent done.
ZDHHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
Cons ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
KS ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
ZDHHC14   10000 perm   2 sec   (6268 perm/sec)   p_kst 1.567000e-01   p_cons 7.200000e-02   p_joint 1.671000e-01

Joint ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
Cons ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
KS ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
ZDHHC14   20000 perm   4 sec   (5514 perm/sec)   p_kst 1.630500e-01   p_cons 7.055000e-02   p_joint 1.453500e-01

Joint ci ratio: 8.139290e-02	ci left: 6.883823e-02	ci right 7.471169e-02	k: 2152	n:30000
Cons ci ratio: 7.917639e-02	ci left: 7.253493e-02	ci right 7.854757e-02	k: 2265	n:30000
KS ci ratio: 5.204347e-02	ci left: 1.548786e-01	ci right 1.631876e-01	k: 4770	n:30000
ZDHHC14   30000 perm   6 sec   (5224 perm/sec)   p_kst 1.590000e-01   p_cons 7.550000e-02   p_joint 7.173333e-02

Outputting figure to mutsig2_images.part000000000193/ZDHHC14.3_1503_30000_0.159_0.0755_0.071733.png
                gene_name: ZDHHC14
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 65 percent done.
ZDHHC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
Cons ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
ZDHHC17   10000 perm   2 sec   (5986 perm/sec)   p_kst 1.500000e-03   p_cons 1.057000e-01   p_joint 9.400000e-03

Joint ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
Cons ci ratio: 8.124902e-02	ci left: 9.999854e-02	ci right 1.085169e-01	k: 2084	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
ZDHHC17   20000 perm   4 sec   (5281 perm/sec)   p_kst 1.200000e-03   p_cons 1.042000e-01   p_joint 1.600000e-03

Joint ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
Cons ci ratio: 6.611012e-02	ci left: 1.014214e-01	ci right 1.083886e-01	k: 3146	n:30000
KS ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
ZDHHC17   30000 perm   6 sec   (5028 perm/sec)   p_kst 1.033333e-03   p_cons 1.048667e-01   p_joint 1.400000e-03

Joint ci ratio: 5.143415e-01	ci left: 1.079454e-03	ci right 1.845864e-03	k: 57	n:40000
Cons ci ratio: 5.723037e-02	ci left: 1.019627e-01	ci right 1.079948e-01	k: 4198	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
ZDHHC17   40000 perm   8 sec   (4823 perm/sec)   p_kst 9.750000e-04   p_cons 1.049500e-01   p_joint 1.425000e-03

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 5.146141e-02	ci left: 1.012978e-01	ci right 1.066683e-01	k: 5198	n:50000
KS ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
ZDHHC17   50000 perm   11 sec   (4701 perm/sec)   p_kst 9.400000e-04   p_cons 1.039600e-01   p_joint 1.340000e-03

Joint ci ratio: 4.407404e-01	ci left: 1.027728e-03	ci right 1.622197e-03	k: 78	n:60000
Cons ci ratio: 4.708642e-02	ci left: 1.011065e-01	ci right 1.059986e-01	k: 6212	n:60000
KS ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
ZDHHC17   60000 perm   13 sec   (4573 perm/sec)   p_kst 9.166667e-04   p_cons 1.035333e-01   p_joint 1.300000e-03

Joint ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
Cons ci ratio: 4.341176e-02	ci left: 1.020592e-01	ci right 1.066022e-01	k: 7302	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
ZDHHC17   70000 perm   16 sec   (4476 perm/sec)   p_kst 8.285714e-04   p_cons 1.043143e-01   p_joint 1.285714e-03

Joint ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
Cons ci ratio: 4.065503e-02	ci left: 1.019919e-01	ci right 1.062368e-01	k: 8328	n:80000
KS ci ratio: 4.898009e-01	ci left: 6.051880e-04	ci right 1.007444e-03	k: 63	n:80000
ZDHHC17   80000 perm   18 sec   (4381 perm/sec)   p_kst 7.875000e-04   p_cons 1.041000e-01   p_joint 1.250000e-03

Joint ci ratio: 3.735268e-01	ci left: 9.945505e-04	ci right 1.460778e-03	k: 109	n:90000
Cons ci ratio: 3.832795e-02	ci left: 1.021231e-01	ci right 1.061247e-01	k: 9370	n:90000
KS ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
ZDHHC17   90000 perm   21 sec   (4293 perm/sec)   p_kst 7.555556e-04   p_cons 1.041111e-01   p_joint 1.211111e-03

Joint ci ratio: 3.591301e-01	ci left: 9.768116e-04	ci right 1.412951e-03	k: 118	n:100000
Cons ci ratio: 3.635374e-02	ci left: 1.022633e-01	ci right 1.060597e-01	k: 10415	n:100000
KS ci ratio: 4.555198e-01	ci left: 5.722458e-04	ci right 9.177792e-04	k: 73	n:100000
ZDHHC17   100000 perm   24 sec   (4214 perm/sec)   p_kst 7.300000e-04   p_cons 1.041500e-01   p_joint 1.180000e-03

Joint ci ratio: 3.359278e-01	ci left: 1.029086e-03	ci right 1.452462e-03	k: 135	n:110000
Cons ci ratio: 3.459726e-02	ci left: 1.026981e-01	ci right 1.063228e-01	k: 11495	n:110000
KS ci ratio: 4.250175e-01	ci left: 6.091506e-04	ci right 9.453478e-04	k: 84	n:110000
ZDHHC17   110000 perm   27 sec   (4135 perm/sec)   p_kst 7.636364e-04   p_cons 1.045000e-01   p_joint 1.227273e-03

Joint ci ratio: 3.198652e-01	ci left: 1.050399e-03	ci right 1.457653e-03	k: 149	n:120000
Cons ci ratio: 3.317178e-02	ci left: 1.025099e-01	ci right 1.059759e-01	k: 12508	n:120000
KS ci ratio: 4.085299e-01	ci left: 6.106053e-04	ci right 9.309849e-04	k: 91	n:120000
ZDHHC17   120000 perm   30 sec   (4060 perm/sec)   p_kst 7.583333e-04   p_cons 1.042333e-01   p_joint 1.241667e-03

Joint ci ratio: 3.087467e-01	ci left: 1.047542e-03	ci right 1.436793e-03	k: 160	n:130000
Cons ci ratio: 3.180290e-02	ci left: 1.029719e-01	ci right 1.063073e-01	k: 13602	n:130000
KS ci ratio: 3.958290e-01	ci left: 6.051209e-04	ci right 9.101697e-04	k: 97	n:130000
ZDHHC17   130000 perm   33 sec   (3983 perm/sec)   p_kst 7.461538e-04   p_cons 1.046308e-01   p_joint 1.230769e-03

Joint ci ratio: 2.978468e-01	ci left: 1.051912e-03	ci right 1.426380e-03	k: 172	n:140000
Cons ci ratio: 3.072620e-02	ci left: 1.025475e-01	ci right 1.057546e-01	k: 14580	n:140000
KS ci ratio: 3.788145e-01	ci left: 6.199269e-04	ci right 9.156698e-04	k: 106	n:140000
ZDHHC17   140000 perm   36 sec   (3917 perm/sec)   p_kst 7.571429e-04   p_cons 1.041429e-01   p_joint 1.228571e-03

Joint ci ratio: 2.311680e-01	ci left: 1.692250e-03	ci right 2.140687e-03	k: 286	n:150000
Cons ci ratio: 2.963724e-02	ci left: 1.028966e-01	ci right 1.059987e-01	k: 15666	n:150000
KS ci ratio: 3.670009e-01	ci left: 6.208924e-04	ci right 9.056454e-04	k: 113	n:150000
ZDHHC17   150000 perm   39 sec   (3851 perm/sec)   p_kst 7.533333e-04   p_cons 1.044400e-01   p_joint 1.906667e-03

Joint ci ratio: 2.784090e-01	ci left: 1.065395e-03	ci right 1.415580e-03	k: 197	n:160000
Cons ci ratio: 2.871962e-02	ci left: 1.027940e-01	ci right 1.057954e-01	k: 16686	n:160000
KS ci ratio: 3.547637e-01	ci left: 6.275546e-04	ci right 9.035557e-04	k: 121	n:160000
ZDHHC17   160000 perm   42 sec   (3787 perm/sec)   p_kst 7.562500e-04   p_cons 1.042875e-01   p_joint 1.231250e-03

Joint ci ratio: 2.653248e-01	ci left: 1.112361e-03	ci right 1.457948e-03	k: 217	n:170000
Cons ci ratio: 2.783579e-02	ci left: 1.030146e-01	ci right 1.059283e-01	k: 17759	n:170000
KS ci ratio: 3.436743e-01	ci left: 6.335721e-04	ci right 9.015744e-04	k: 129	n:170000
ZDHHC17   170000 perm   46 sec   (3726 perm/sec)   p_kst 7.588235e-04   p_cons 1.044647e-01   p_joint 1.276471e-03

Joint ci ratio: 2.566408e-01	ci left: 1.128448e-03	ci right 1.465721e-03	k: 232	n:180000
Cons ci ratio: 2.698005e-02	ci left: 1.035488e-01	ci right 1.063862e-01	k: 18893	n:180000
KS ci ratio: 3.299933e-01	ci left: 6.543195e-04	ci right 9.177440e-04	k: 140	n:180000
ZDHHC17   180000 perm   49 sec   (3664 perm/sec)   p_kst 7.777778e-04   p_cons 1.049611e-01   p_joint 1.288889e-03

Joint ci ratio: 2.462835e-01	ci left: 1.167691e-03	ci right 1.500455e-03	k: 252	n:190000
Cons ci ratio: 2.623450e-02	ci left: 1.037715e-01	ci right 1.065353e-01	k: 19978	n:190000
KS ci ratio: 3.178259e-01	ci left: 6.730720e-04	ci right 9.320246e-04	k: 151	n:190000
ZDHHC17   190000 perm   53 sec   (3608 perm/sec)   p_kst 7.947368e-04   p_cons 1.051474e-01   p_joint 1.326316e-03

Joint ci ratio: 2.388452e-01	ci left: 1.184446e-03	ci right 1.510282e-03	k: 268	n:200000
Cons ci ratio: 2.559031e-02	ci left: 1.036597e-01	ci right 1.063517e-01	k: 21000	n:200000
KS ci ratio: 3.059743e-01	ci left: 6.947253e-04	ci right 9.501013e-04	k: 163	n:200000
ZDHHC17   200000 perm   56 sec   (3556 perm/sec)   p_kst 8.150000e-04   p_cons 1.050000e-01   p_joint 1.340000e-03

Joint ci ratio: 2.328622e-01	ci left: 1.190772e-03	ci right 1.508962e-03	k: 282	n:210000
Cons ci ratio: 2.498628e-02	ci left: 1.035972e-01	ci right 1.062232e-01	k: 22030	n:210000
KS ci ratio: 3.005278e-01	ci left: 6.880406e-04	ci right 9.355977e-04	k: 169	n:210000
ZDHHC17   210000 perm   60 sec   (3504 perm/sec)   p_kst 8.047619e-04   p_cons 1.049048e-01   p_joint 1.342857e-03

Joint ci ratio: 2.280776e-01	ci left: 1.188043e-03	ci right 1.498062e-03	k: 294	n:220000
Cons ci ratio: 2.441423e-02	ci left: 1.036089e-01	ci right 1.061742e-01	k: 23075	n:220000
KS ci ratio: 2.953622e-01	ci left: 6.820002e-04	ci right 9.223763e-04	k: 175	n:220000
ZDHHC17   220000 perm   64 sec   (3452 perm/sec)   p_kst 7.954545e-04   p_cons 1.048864e-01   p_joint 1.336364e-03

Joint ci ratio: 2.228507e-01	ci left: 1.193821e-03	ci right 1.497230e-03	k: 308	n:230000
Cons ci ratio: 2.389913e-02	ci left: 1.034689e-01	ci right 1.059759e-01	k: 24085	n:230000
KS ci ratio: 2.904541e-01	ci left: 6.765182e-04	ci right 9.102717e-04	k: 181	n:230000
ZDHHC17   230000 perm   68 sec   (3399 perm/sec)   p_kst 7.869565e-04   p_cons 1.047174e-01   p_joint 1.339130e-03

Joint ci ratio: 2.937068e-01	ci left: 6.328820e-04	ci right 8.544628e-04	k: 177	n:240000
Cons ci ratio: 2.340177e-02	ci left: 1.034488e-01	ci right 1.059024e-01	k: 25121	n:240000
KS ci ratio: 2.937068e-01	ci left: 6.328820e-04	ci right 8.544628e-04	k: 177	n:240000
ZDHHC17   240000 perm   72 sec   (3348 perm/sec)   p_kst 7.375000e-04   p_cons 1.046708e-01   p_joint 7.375000e-04

Joint ci ratio: 2.873208e-01	ci left: 6.372356e-04	ci right 8.546091e-04	k: 185	n:250000
Cons ci ratio: 2.291465e-02	ci left: 1.035900e-01	ci right 1.059952e-01	k: 26197	n:250000
KS ci ratio: 2.873208e-01	ci left: 6.372356e-04	ci right 8.546091e-04	k: 185	n:250000
ZDHHC17   250000 perm   76 sec   (3299 perm/sec)   p_kst 7.400000e-04   p_cons 1.047880e-01   p_joint 7.400000e-04

Joint ci ratio: 2.850338e-01	ci left: 6.234362e-04	ci right 8.341050e-04	k: 188	n:260000
Cons ci ratio: 2.245215e-02	ci left: 1.037591e-01	ci right 1.061190e-01	k: 27283	n:260000
KS ci ratio: 2.850338e-01	ci left: 6.234362e-04	ci right 8.341050e-04	k: 188	n:260000
ZDHHC17   260000 perm   80 sec   (3249 perm/sec)   p_kst 7.230769e-04   p_cons 1.049346e-01   p_joint 7.230769e-04

Joint ci ratio: 2.770827e-01	ci left: 6.382166e-04	ci right 8.468155e-04	k: 199	n:270000
Cons ci ratio: 2.203000e-02	ci left: 1.038019e-01	ci right 1.061177e-01	k: 28338	n:270000
KS ci ratio: 2.770827e-01	ci left: 6.382166e-04	ci right 8.468155e-04	k: 199	n:270000
ZDHHC17   270000 perm   84 sec   (3201 perm/sec)   p_kst 7.370370e-04   p_cons 1.049556e-01   p_joint 7.370370e-04

Joint ci ratio: 2.704038e-01	ci left: 6.486871e-04	ci right 8.547306e-04	k: 209	n:280000
Cons ci ratio: 2.162794e-02	ci left: 1.038668e-01	ci right 1.061413e-01	k: 29400	n:280000
KS ci ratio: 2.704038e-01	ci left: 6.486871e-04	ci right 8.547306e-04	k: 209	n:280000
ZDHHC17   280000 perm   89 sec   (3153 perm/sec)   p_kst 7.464286e-04   p_cons 1.050000e-01   p_joint 7.464286e-04

Joint ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
Cons ci ratio: 2.125139e-02	ci left: 1.038899e-01	ci right 1.061249e-01	k: 30451	n:290000
KS ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
ZDHHC17   290000 perm   93 sec   (3110 perm/sec)   p_kst 7.655172e-04   p_cons 1.050034e-01   p_joint 7.655172e-04

Joint ci ratio: 1.956243e-01	ci left: 1.205929e-03	ci right 1.470521e-03	k: 400	n:300000
Cons ci ratio: 2.088423e-02	ci left: 1.039981e-01	ci right 1.061962e-01	k: 31528	n:300000
KS ci ratio: 2.561580e-01	ci left: 6.801669e-04	ci right 8.830107e-04	k: 233	n:300000
ZDHHC17   300000 perm   98 sec   (3070 perm/sec)   p_kst 7.766667e-04   p_cons 1.050933e-01   p_joint 1.333333e-03

Joint ci ratio: 2.534655e-01	ci left: 6.733248e-04	ci right 8.716839e-04	k: 238	n:310000
Cons ci ratio: 2.051788e-02	ci left: 1.042601e-01	ci right 1.064247e-01	k: 32655	n:310000
KS ci ratio: 2.534655e-01	ci left: 6.733248e-04	ci right 8.716839e-04	k: 238	n:310000
ZDHHC17   310000 perm   102 sec   (3029 perm/sec)   p_kst 7.677419e-04   p_cons 1.053387e-01   p_joint 7.677419e-04

Joint ci ratio: 2.463505e-01	ci left: 6.932948e-04	ci right 8.909264e-04	k: 252	n:320000
Cons ci ratio: 2.019221e-02	ci left: 1.043008e-01	ci right 1.064314e-01	k: 33716	n:320000
KS ci ratio: 2.463505e-01	ci left: 6.932948e-04	ci right 8.909264e-04	k: 252	n:320000
ZDHHC17   320000 perm   107 sec   (2988 perm/sec)   p_kst 7.875000e-04   p_cons 1.053625e-01   p_joint 7.875000e-04

Joint ci ratio: 2.425456e-01	ci left: 6.950436e-04	ci right 8.896530e-04	k: 260	n:330000
Cons ci ratio: 1.987263e-02	ci left: 1.044237e-01	ci right 1.065227e-01	k: 34805	n:330000
KS ci ratio: 2.425456e-01	ci left: 6.950436e-04	ci right 8.896530e-04	k: 260	n:330000
ZDHHC17   330000 perm   112 sec   (2949 perm/sec)   p_kst 7.878788e-04   p_cons 1.054697e-01   p_joint 7.878788e-04

Joint ci ratio: 2.393574e-01	ci left: 6.939464e-04	ci right 8.853157e-04	k: 267	n:340000
Cons ci ratio: 1.958209e-02	ci left: 1.044020e-01	ci right 1.064695e-01	k: 35847	n:340000
KS ci ratio: 2.393574e-01	ci left: 6.939464e-04	ci right 8.853157e-04	k: 267	n:340000
ZDHHC17   340000 perm   117 sec   (2911 perm/sec)   p_kst 7.852941e-04   p_cons 1.054324e-01   p_joint 7.852941e-04

Joint ci ratio: 2.371563e-01	ci left: 6.875520e-04	ci right 8.751583e-04	k: 272	n:350000
Cons ci ratio: 1.930159e-02	ci left: 1.044045e-01	ci right 1.064421e-01	k: 36897	n:350000
KS ci ratio: 2.371563e-01	ci left: 6.875520e-04	ci right 8.751583e-04	k: 272	n:350000
ZDHHC17   350000 perm   122 sec   (2871 perm/sec)   p_kst 7.771429e-04   p_cons 1.054200e-01   p_joint 7.771429e-04

Joint ci ratio: 2.325171e-01	ci left: 6.972118e-04	ci right 8.831977e-04	k: 283	n:360000
Cons ci ratio: 1.904600e-02	ci left: 1.042770e-01	ci right 1.062849e-01	k: 37900	n:360000
KS ci ratio: 2.325171e-01	ci left: 6.972118e-04	ci right 8.831977e-04	k: 283	n:360000
ZDHHC17   360000 perm   127 sec   (2836 perm/sec)   p_kst 7.861111e-04   p_cons 1.052778e-01   p_joint 7.861111e-04

Joint ci ratio: 1.750138e-01	ci left: 1.235553e-03	ci right 1.475069e-03	k: 500	n:370000
Cons ci ratio: 1.879435e-02	ci left: 1.042158e-01	ci right 1.061958e-01	k: 38925	n:370000
KS ci ratio: 2.297038e-01	ci left: 6.961918e-04	ci right 8.793399e-04	k: 290	n:370000
ZDHHC17   370000 perm   132 sec   (2801 perm/sec)   p_kst 7.837838e-04   p_cons 1.052027e-01   p_joint 1.351351e-03

Joint ci ratio: 1.721173e-01	ci left: 1.245832e-03	ci right 1.482929e-03	k: 517	n:380000
Cons ci ratio: 1.853377e-02	ci left: 1.043468e-01	ci right 1.063014e-01	k: 40022	n:380000
KS ci ratio: 2.269901e-01	ci left: 6.952383e-04	ci right 8.756724e-04	k: 297	n:380000
ZDHHC17   380000 perm   137 sec   (2768 perm/sec)   p_kst 7.815789e-04   p_cons 1.053211e-01   p_joint 1.360526e-03

Joint ci ratio: 1.695186e-01	ci left: 1.253160e-03	ci right 1.487682e-03	k: 533	n:390000
Cons ci ratio: 1.828870e-02	ci left: 1.044201e-01	ci right 1.063499e-01	k: 41099	n:390000
KS ci ratio: 2.236379e-01	ci left: 6.991864e-04	ci right 8.775963e-04	k: 306	n:390000
ZDHHC17   390000 perm   143 sec   (2735 perm/sec)   p_kst 7.846154e-04   p_cons 1.053821e-01   p_joint 1.366667e-03

Joint ci ratio: 1.670342e-01	ci left: 1.260147e-03	ci right 1.492173e-03	k: 549	n:400000
Cons ci ratio: 1.805957e-02	ci left: 1.044226e-01	ci right 1.063281e-01	k: 42149	n:400000
KS ci ratio: 2.197350e-01	ci left: 7.076802e-04	ci right 8.846804e-04	k: 317	n:400000
ZDHHC17   400000 perm   148 sec   (2704 perm/sec)   p_kst 7.925000e-04   p_cons 1.053725e-01   p_joint 1.372500e-03

Joint ci ratio: 1.658337e-01	ci left: 1.248110e-03	ci right 1.476104e-03	k: 557	n:410000
Cons ci ratio: 1.784715e-02	ci left: 1.043378e-01	ci right 1.062191e-01	k: 43163	n:410000
KS ci ratio: 2.173560e-01	ci left: 7.065583e-04	ci right 8.811091e-04	k: 324	n:410000
ZDHHC17   410000 perm   153 sec   (2672 perm/sec)   p_kst 7.902439e-04   p_cons 1.052756e-01   p_joint 1.358537e-03

Joint ci ratio: 1.642234e-01	ci left: 1.243502e-03	ci right 1.468230e-03	k: 568	n:420000
Cons ci ratio: 1.764317e-02	ci left: 1.042452e-01	ci right 1.061031e-01	k: 44172	n:420000
KS ci ratio: 2.144073e-01	ci left: 7.100057e-04	ci right 8.827155e-04	k: 333	n:420000
ZDHHC17   420000 perm   159 sec   (2642 perm/sec)   p_kst 7.928571e-04   p_cons 1.051714e-01   p_joint 1.352381e-03

Joint ci ratio: 1.621004e-01	ci left: 1.248043e-03	ci right 1.470391e-03	k: 583	n:430000
Cons ci ratio: 1.744494e-02	ci left: 1.041686e-01	ci right 1.060041e-01	k: 45186	n:430000
KS ci ratio: 2.125075e-01	ci left: 7.067014e-04	ci right 8.768858e-04	k: 339	n:430000
ZDHHC17   430000 perm   164 sec   (2614 perm/sec)   p_kst 7.883721e-04   p_cons 1.050837e-01   p_joint 1.355814e-03

Joint ci ratio: 1.601916e-01	ci left: 1.250213e-03	ci right 1.470074e-03	k: 597	n:440000
Cons ci ratio: 1.724179e-02	ci left: 1.042202e-01	ci right 1.060350e-01	k: 46255	n:440000
KS ci ratio: 2.094492e-01	ci left: 7.121667e-04	ci right 8.808826e-04	k: 349	n:440000
ZDHHC17   440000 perm   170 sec   (2586 perm/sec)   p_kst 7.931818e-04   p_cons 1.051250e-01   p_joint 1.356818e-03

Joint ci ratio: 1.588694e-01	ci left: 1.243766e-03	ci right 1.460514e-03	k: 607	n:450000
Cons ci ratio: 1.705342e-02	ci left: 1.041832e-01	ci right 1.059774e-01	k: 47285	n:450000
KS ci ratio: 2.070958e-01	ci left: 7.131914e-04	ci right 8.800110e-04	k: 357	n:450000
ZDHHC17   450000 perm   176 sec   (2558 perm/sec)   p_kst 7.933333e-04   p_cons 1.050778e-01   p_joint 1.348889e-03

Joint ci ratio: 1.565679e-01	ci left: 1.254314e-03	ci right 1.469437e-03	k: 625	n:460000
Cons ci ratio: 1.687324e-02	ci left: 1.041242e-01	ci right 1.058982e-01	k: 48304	n:460000
KS ci ratio: 2.042622e-01	ci left: 7.183070e-04	ci right 8.837373e-04	k: 367	n:460000
ZDHHC17   460000 perm   182 sec   (2531 perm/sec)   p_kst 7.978261e-04   p_cons 1.050087e-01   p_joint 1.358696e-03

Joint ci ratio: 1.538858e-01	ci left: 1.272618e-03	ci right 1.486796e-03	k: 647	n:470000
Cons ci ratio: 1.669544e-02	ci left: 1.041038e-01	ci right 1.058586e-01	k: 49340	n:470000
KS ci ratio: 2.007461e-01	ci left: 7.292814e-04	ci right 8.939940e-04	k: 380	n:470000
ZDHHC17   470000 perm   188 sec   (2506 perm/sec)   p_kst 8.085106e-04   p_cons 1.049787e-01   p_joint 1.376596e-03

Joint ci ratio: 1.529455e-01	ci left: 1.262131e-03	ci right 1.473128e-03	k: 655	n:480000
Cons ci ratio: 1.651966e-02	ci left: 1.041237e-01	ci right 1.058602e-01	k: 50395	n:480000
KS ci ratio: 1.997014e-01	ci left: 7.220034e-04	ci right 8.841201e-04	k: 384	n:480000
ZDHHC17   480000 perm   194 sec   (2479 perm/sec)   p_kst 8.000000e-04   p_cons 1.049896e-01   p_joint 1.364583e-03

Joint ci ratio: 1.515658e-01	ci left: 1.259930e-03	ci right 1.468487e-03	k: 667	n:490000
Cons ci ratio: 1.634755e-02	ci left: 1.041633e-01	ci right 1.058822e-01	k: 51460	n:490000
KS ci ratio: 1.981636e-01	ci left: 7.189035e-04	ci right 8.789310e-04	k: 390	n:490000
ZDHHC17   490000 perm   200 sec   (2454 perm/sec)   p_kst 7.959184e-04   p_cons 1.050204e-01   p_joint 1.361224e-03

Joint ci ratio: 1.497822e-01	ci left: 1.265525e-03	ci right 1.472322e-03	k: 683	n:500000
Cons ci ratio: 1.618157e-02	ci left: 1.041914e-01	ci right 1.058931e-01	k: 52520	n:500000
KS ci ratio: 1.959214e-01	ci left: 7.216375e-04	ci right 8.802391e-04	k: 399	n:500000
ZDHHC17   500000 perm   206 sec   (2429 perm/sec)   p_kst 7.980000e-04   p_cons 1.050400e-01   p_joint 1.366000e-03

Joint ci ratio: 1.482725e-01	ci left: 1.267138e-03	ci right 1.471927e-03	k: 697	n:510000
Cons ci ratio: 1.601670e-02	ci left: 1.042635e-01	ci right 1.059488e-01	k: 53603	n:510000
KS ci ratio: 1.935170e-01	ci left: 7.261399e-04	ci right 8.835419e-04	k: 409	n:510000
ZDHHC17   510000 perm   212 sec   (2406 perm/sec)   p_kst 8.019608e-04   p_cons 1.051039e-01   p_joint 1.366667e-03

Joint ci ratio: 1.468075e-01	ci left: 1.268700e-03	ci right 1.471537e-03	k: 711	n:520000
Cons ci ratio: 1.585677e-02	ci left: 1.043328e-01	ci right 1.060023e-01	k: 54686	n:520000
KS ci ratio: 1.921167e-01	ci left: 7.231570e-04	ci right 8.786456e-04	k: 415	n:520000
ZDHHC17   520000 perm   218 sec   (2381 perm/sec)   p_kst 7.980769e-04   p_cons 1.051654e-01   p_joint 1.367308e-03

Joint ci ratio: 1.449856e-01	ci left: 1.277485e-03	ci right 1.478972e-03	k: 729	n:530000
Cons ci ratio: 1.570673e-02	ci left: 1.043376e-01	ci right 1.059912e-01	k: 55736	n:530000
KS ci ratio: 1.898481e-01	ci left: 7.274785e-04	ci right 8.818362e-04	k: 425	n:530000
ZDHHC17   530000 perm   225 sec   (2359 perm/sec)   p_kst 8.018868e-04   p_cons 1.051623e-01   p_joint 1.375472e-03

Joint ci ratio: 1.428480e-01	ci left: 1.293102e-03	ci right 1.493790e-03	k: 751	n:540000
Cons ci ratio: 1.555704e-02	ci left: 1.043884e-01	ci right 1.060269e-01	k: 56811	n:540000
KS ci ratio: 1.870152e-01	ci left: 7.369456e-04	ci right 8.907138e-04	k: 438	n:540000
ZDHHC17   540000 perm   231 sec   (2336 perm/sec)   p_kst 8.111111e-04   p_cons 1.052056e-01   p_joint 1.390741e-03

Joint ci ratio: 1.419081e-01	ci left: 1.287125e-03	ci right 1.485459e-03	k: 761	n:550000
Cons ci ratio: 1.540798e-02	ci left: 1.044809e-01	ci right 1.061051e-01	k: 57910	n:550000
KS ci ratio: 1.855419e-01	ci left: 7.356803e-04	ci right 8.878392e-04	k: 445	n:550000
ZDHHC17   550000 perm   238 sec   (2313 perm/sec)   p_kst 8.090909e-04   p_cons 1.052909e-01   p_joint 1.383636e-03

Joint ci ratio: 1.405315e-01	ci left: 1.289980e-03	ci right 1.486665e-03	k: 776	n:560000
Cons ci ratio: 1.526255e-02	ci left: 1.045773e-01	ci right 1.061875e-01	k: 59013	n:560000
KS ci ratio: 1.832949e-01	ci left: 7.412794e-04	ci right 8.925333e-04	k: 456	n:560000
ZDHHC17   560000 perm   244 sec   (2291 perm/sec)   p_kst 8.142857e-04   p_cons 1.053804e-01   p_joint 1.385714e-03

Joint ci ratio: 1.396363e-01	ci left: 1.284278e-03	ci right 1.478742e-03	k: 786	n:570000
Cons ci ratio: 1.513100e-02	ci left: 1.045480e-01	ci right 1.061437e-01	k: 60046	n:570000
KS ci ratio: 1.824986e-01	ci left: 7.349705e-04	ci right 8.842136e-04	k: 460	n:570000
ZDHHC17   570000 perm   251 sec   (2268 perm/sec)   p_kst 8.070175e-04   p_cons 1.053439e-01   p_joint 1.378947e-03

Joint ci ratio: 1.388452e-01	ci left: 1.277111e-03	ci right 1.469304e-03	k: 795	n:580000
Cons ci ratio: 1.500596e-02	ci left: 1.044803e-01	ci right 1.060616e-01	k: 61056	n:580000
KS ci ratio: 1.813228e-01	ci left: 7.321723e-04	ci right 8.797840e-04	k: 466	n:580000
ZDHHC17   580000 perm   258 sec   (2247 perm/sec)   p_kst 8.034483e-04   p_cons 1.052690e-01   p_joint 1.370690e-03

Joint ci ratio: 1.378105e-01	ci left: 1.275100e-03	ci right 1.465443e-03	k: 807	n:590000
Cons ci ratio: 1.487821e-02	ci left: 1.044875e-01	ci right 1.060554e-01	k: 62109	n:590000
KS ci ratio: 1.796003e-01	ci left: 7.343279e-04	ci right 8.808149e-04	k: 475	n:590000
ZDHHC17   590000 perm   265 sec   (2226 perm/sec)   p_kst 8.050847e-04   p_cons 1.052695e-01   p_joint 1.367797e-03

Joint ci ratio: 1.366319e-01	ci left: 1.276381e-03	ci right 1.465153e-03	k: 821	n:600000
Cons ci ratio: 1.475249e-02	ci left: 1.045095e-01	ci right 1.060643e-01	k: 63171	n:600000
KS ci ratio: 1.779259e-01	ci left: 7.364180e-04	ci right 8.818051e-04	k: 484	n:600000
ZDHHC17   600000 perm   272 sec   (2205 perm/sec)   p_kst 8.066667e-04   p_cons 1.052850e-01   p_joint 1.368333e-03

Joint ci ratio: 1.356456e-01	ci left: 1.274459e-03	ci right 1.461476e-03	k: 833	n:610000
Cons ci ratio: 1.463309e-02	ci left: 1.044899e-01	ci right 1.060318e-01	k: 64208	n:610000
KS ci ratio: 1.768358e-01	ci left: 7.337448e-04	ci right 8.776217e-04	k: 490	n:610000
ZDHHC17   610000 perm   279 sec   (2185 perm/sec)   p_kst 8.032787e-04   p_cons 1.052590e-01   p_joint 1.365574e-03

Joint ci ratio: 1.346007e-01	ci left: 1.274162e-03	ci right 1.459580e-03	k: 846	n:620000
Cons ci ratio: 1.452003e-02	ci left: 1.044261e-01	ci right 1.059550e-01	k: 65217	n:620000
KS ci ratio: 1.755887e-01	ci left: 7.327025e-04	ci right 8.752544e-04	k: 497	n:620000
ZDHHC17   620000 perm   286 sec   (2165 perm/sec)   p_kst 8.016129e-04   p_cons 1.051887e-01   p_joint 1.364516e-03

Joint ci ratio: 1.336574e-01	ci left: 1.272346e-03	ci right 1.456098e-03	k: 858	n:630000
Cons ci ratio: 1.440553e-02	ci left: 1.044165e-01	ci right 1.059332e-01	k: 66259	n:630000
KS ci ratio: 1.743676e-01	ci left: 7.316968e-04	ci right 8.729587e-04	k: 504	n:630000
ZDHHC17   630000 perm   294 sec   (2146 perm/sec)   p_kst 8.000000e-04   p_cons 1.051730e-01   p_joint 1.361905e-03

Joint ci ratio: 1.327336e-01	ci left: 1.270590e-03	ci right 1.452721e-03	k: 870	n:640000
Cons ci ratio: 1.429180e-02	ci left: 1.044322e-01	ci right 1.059370e-01	k: 67317	n:640000
KS ci ratio: 1.733412e-01	ci left: 7.292310e-04	ci right 8.691014e-04	k: 510	n:640000
ZDHHC17   640000 perm   301 sec   (2126 perm/sec)   p_kst 7.968750e-04   p_cons 1.051828e-01   p_joint 1.359375e-03

Joint ci ratio: 1.322041e-01	ci left: 1.261455e-03	ci right 1.441498e-03	k: 877	n:650000
Cons ci ratio: 1.418188e-02	ci left: 1.044321e-01	ci right 1.059252e-01	k: 68365	n:650000
KS ci ratio: 1.724997e-01	ci left: 7.253713e-04	ci right 8.637557e-04	k: 515	n:650000
ZDHHC17   650000 perm   309 sec   (2107 perm/sec)   p_kst 7.923077e-04   p_cons 1.051769e-01   p_joint 1.349231e-03

Joint ci ratio: 1.312362e-01	ci left: 1.261390e-03	ci right 1.440003e-03	k: 890	n:660000
Cons ci ratio: 1.407639e-02	ci left: 1.044064e-01	ci right 1.058880e-01	k: 69396	n:660000
KS ci ratio: 1.710146e-01	ci left: 7.274311e-04	ci right 8.648904e-04	k: 524	n:660000
ZDHHC17   660000 perm   316 sec   (2088 perm/sec)   p_kst 7.939394e-04   p_cons 1.051455e-01   p_joint 1.348485e-03

Joint ci ratio: 1.300732e-01	ci left: 1.265663e-03	ci right 1.443171e-03	k: 906	n:670000
Cons ci ratio: 1.396712e-02	ci left: 1.044633e-01	ci right 1.059341e-01	k: 70482	n:670000
KS ci ratio: 1.694086e-01	ci left: 7.308636e-04	ci right 8.675421e-04	k: 534	n:670000
ZDHHC17   670000 perm   324 sec   (2070 perm/sec)   p_kst 7.970149e-04   p_cons 1.051970e-01   p_joint 1.352239e-03

Joint ci ratio: 1.821157e-01	ci left: 6.188818e-04	ci right 7.442588e-04	k: 462	n:680000
Cons ci ratio: 1.386166e-02	ci left: 1.045010e-01	ci right 1.059611e-01	k: 71556	n:680000
KS ci ratio: 1.821157e-01	ci left: 6.188818e-04	ci right 7.442588e-04	k: 462	n:680000
ZDHHC17   680000 perm   331 sec   (2053 perm/sec)   p_kst 6.794118e-04   p_cons 1.052294e-01   p_joint 6.794118e-04

Joint ci ratio: 1.803708e-01	ci left: 6.223643e-04	ci right 7.471069e-04	k: 471	n:690000
Cons ci ratio: 1.375961e-02	ci left: 1.045232e-01	ci right 1.059728e-01	k: 72620	n:690000
KS ci ratio: 1.803708e-01	ci left: 6.223643e-04	ci right 7.471069e-04	k: 471	n:690000
ZDHHC17   690000 perm   339 sec   (2036 perm/sec)   p_kst 6.826087e-04   p_cons 1.052464e-01   p_joint 6.826087e-04

Joint ci ratio: 1.783045e-01	ci left: 6.284825e-04	ci right 7.528527e-04	k: 482	n:700000
Cons ci ratio: 1.366693e-02	ci left: 1.044466e-01	ci right 1.058853e-01	k: 73615	n:700000
KS ci ratio: 1.783045e-01	ci left: 6.284825e-04	ci right 7.528527e-04	k: 482	n:700000
ZDHHC17   700000 perm   347 sec   (2019 perm/sec)   p_kst 6.885714e-04   p_cons 1.051643e-01   p_joint 6.885714e-04

Joint ci ratio: 1.763076e-01	ci left: 6.344362e-04	ci right 7.584287e-04	k: 493	n:710000
Cons ci ratio: 1.357315e-02	ci left: 1.044128e-01	ci right 1.058411e-01	k: 74639	n:710000
KS ci ratio: 1.763076e-01	ci left: 6.344362e-04	ci right 7.584287e-04	k: 493	n:710000
ZDHHC17   710000 perm   355 sec   (2002 perm/sec)   p_kst 6.943662e-04   p_cons 1.051254e-01   p_joint 6.943662e-04

Joint ci ratio: 1.755985e-01	ci left: 6.309353e-04	ci right 7.536951e-04	k: 497	n:720000
Cons ci ratio: 1.347869e-02	ci left: 1.044160e-01	ci right 1.058344e-01	k: 75689	n:720000
KS ci ratio: 1.755985e-01	ci left: 6.309353e-04	ci right 7.536951e-04	k: 497	n:720000
ZDHHC17   720000 perm   363 sec   (1985 perm/sec)   p_kst 6.902778e-04   p_cons 1.051236e-01   p_joint 6.902778e-04

Joint ci ratio: 1.736902e-01	ci left: 6.367024e-04	ci right 7.590968e-04	k: 508	n:730000
Cons ci ratio: 1.338959e-02	ci left: 1.043714e-01	ci right 1.057797e-01	k: 76704	n:730000
KS ci ratio: 1.736902e-01	ci left: 6.367024e-04	ci right 7.590968e-04	k: 508	n:730000
ZDHHC17   730000 perm   371 sec   (1968 perm/sec)   p_kst 6.958904e-04   p_cons 1.050740e-01   p_joint 6.958904e-04

Joint ci ratio: 1.723411e-01	ci left: 6.384410e-04	ci right 7.601172e-04	k: 516	n:740000
Cons ci ratio: 1.329888e-02	ci left: 1.043752e-01	ci right 1.057739e-01	k: 77754	n:740000
KS ci ratio: 1.723411e-01	ci left: 6.384410e-04	ci right 7.601172e-04	k: 516	n:740000
ZDHHC17   740000 perm   379 sec   (1952 perm/sec)   p_kst 6.972973e-04   p_cons 1.050730e-01   p_joint 6.972973e-04

Joint ci ratio: 1.706978e-01	ci left: 6.426896e-04	ci right 7.638873e-04	k: 526	n:750000
Cons ci ratio: 1.320878e-02	ci left: 1.043961e-01	ci right 1.057856e-01	k: 78817	n:750000
KS ci ratio: 1.706978e-01	ci left: 6.426896e-04	ci right 7.638873e-04	k: 526	n:750000
ZDHHC17   750000 perm   387 sec   (1937 perm/sec)   p_kst 7.013333e-04   p_cons 1.050893e-01   p_joint 7.013333e-04

Joint ci ratio: 1.689433e-01	ci left: 6.480918e-04	ci right 7.689242e-04	k: 537	n:760000
Cons ci ratio: 1.311901e-02	ci left: 1.044376e-01	ci right 1.058180e-01	k: 79896	n:760000
KS ci ratio: 1.689433e-01	ci left: 6.480918e-04	ci right 7.689242e-04	k: 537	n:760000
ZDHHC17   760000 perm   396 sec   (1921 perm/sec)   p_kst 7.065789e-04   p_cons 1.051263e-01   p_joint 7.065789e-04

Joint ci ratio: 1.684746e-01	ci left: 6.434065e-04	ci right 7.629988e-04	k: 540	n:770000
Cons ci ratio: 1.303024e-02	ci left: 1.044896e-01	ci right 1.058614e-01	k: 80984	n:770000
KS ci ratio: 1.684746e-01	ci left: 6.434065e-04	ci right 7.629988e-04	k: 540	n:770000
ZDHHC17   770000 perm   404 sec   (1906 perm/sec)   p_kst 7.012987e-04   p_cons 1.051740e-01   p_joint 7.012987e-04

Joint ci ratio: 1.677017e-01	ci left: 6.412982e-04	ci right 7.598965e-04	k: 545	n:780000
Cons ci ratio: 1.294546e-02	ci left: 1.045084e-01	ci right 1.058714e-01	k: 82047	n:780000
KS ci ratio: 1.677017e-01	ci left: 6.412982e-04	ci right 7.598965e-04	k: 545	n:780000
ZDHHC17   780000 perm   413 sec   (1890 perm/sec)   p_kst 6.987179e-04   p_cons 1.051885e-01   p_joint 6.987179e-04

Joint ci ratio: 1.673959e-01	ci left: 6.356059e-04	ci right 7.529155e-04	k: 547	n:790000
Cons ci ratio: 1.286291e-02	ci left: 1.045179e-01	ci right 1.058723e-01	k: 83103	n:790000
KS ci ratio: 1.673959e-01	ci left: 6.356059e-04	ci right 7.529155e-04	k: 547	n:790000
ZDHHC17   790000 perm   421 sec   (1875 perm/sec)   p_kst 6.924051e-04   p_cons 1.051937e-01   p_joint 6.924051e-04

Joint ci ratio: 1.666376e-01	ci left: 6.336495e-04	ci right 7.500152e-04	k: 552	n:800000
Cons ci ratio: 1.278030e-02	ci left: 1.045509e-01	ci right 1.058969e-01	k: 84178	n:800000
KS ci ratio: 1.666376e-01	ci left: 6.336495e-04	ci right 7.500152e-04	k: 552	n:800000
ZDHHC17   800000 perm   430 sec   (1860 perm/sec)   p_kst 6.900000e-04   p_cons 1.052225e-01   p_joint 6.900000e-04

Joint ci ratio: 1.655929e-01	ci left: 6.341094e-04	ci right 7.497566e-04	k: 559	n:810000
Cons ci ratio: 1.270210e-02	ci left: 1.045413e-01	ci right 1.058788e-01	k: 85219	n:810000
KS ci ratio: 1.655929e-01	ci left: 6.341094e-04	ci right 7.497566e-04	k: 559	n:810000
ZDHHC17   810000 perm   439 sec   (1845 perm/sec)   p_kst 6.901235e-04   p_cons 1.052086e-01   p_joint 6.901235e-04

Joint ci ratio: 1.641336e-01	ci left: 6.380684e-04	ci right 7.533109e-04	k: 569	n:820000
Cons ci ratio: 1.262843e-02	ci left: 1.044856e-01	ci right 1.058147e-01	k: 86222	n:820000
KS ci ratio: 1.641336e-01	ci left: 6.380684e-04	ci right 7.533109e-04	k: 569	n:820000
ZDHHC17   820000 perm   448 sec   (1830 perm/sec)   p_kst 6.939024e-04   p_cons 1.051488e-01   p_joint 6.939024e-04

Joint ci ratio: 1.629936e-01	ci left: 6.396249e-04	ci right 7.542676e-04	k: 577	n:830000
Cons ci ratio: 1.255337e-02	ci left: 1.044710e-01	ci right 1.057920e-01	k: 87258	n:830000
KS ci ratio: 1.629936e-01	ci left: 6.396249e-04	ci right 7.542676e-04	k: 577	n:830000
ZDHHC17   830000 perm   457 sec   (1816 perm/sec)   p_kst 6.951807e-04   p_cons 1.051301e-01   p_joint 6.951807e-04

Joint ci ratio: 1.611904e-01	ci left: 6.468590e-04	ci right 7.613914e-04	k: 590	n:840000
Cons ci ratio: 1.248121e-02	ci left: 1.044331e-01	ci right 1.057459e-01	k: 88274	n:840000
KS ci ratio: 1.611904e-01	ci left: 6.468590e-04	ci right 7.613914e-04	k: 590	n:840000
ZDHHC17   840000 perm   466 sec   (1803 perm/sec)   p_kst 7.023810e-04   p_cons 1.050881e-01   p_joint 7.023810e-04

Joint ci ratio: 1.603785e-01	ci left: 6.460236e-04	ci right 7.597765e-04	k: 596	n:850000
Cons ci ratio: 1.240897e-02	ci left: 1.044159e-01	ci right 1.057209e-01	k: 89307	n:850000
KS ci ratio: 1.603785e-01	ci left: 6.460236e-04	ci right 7.597765e-04	k: 596	n:850000
ZDHHC17   850000 perm   475 sec   (1788 perm/sec)   p_kst 7.011765e-04   p_cons 1.050671e-01   p_joint 7.011765e-04

Joint ci ratio: 1.598442e-01	ci left: 6.429765e-04	ci right 7.557794e-04	k: 600	n:860000
Cons ci ratio: 1.233743e-02	ci left: 1.044074e-01	ci right 1.057046e-01	k: 90347	n:860000
KS ci ratio: 1.598442e-01	ci left: 6.429765e-04	ci right 7.557794e-04	k: 600	n:860000
ZDHHC17   860000 perm   485 sec   (1775 perm/sec)   p_kst 6.976744e-04   p_cons 1.050547e-01   p_joint 6.976744e-04

Joint ci ratio: 1.593151e-01	ci left: 6.399999e-04	ci right 7.518735e-04	k: 604	n:870000
Cons ci ratio: 1.226486e-02	ci left: 1.044334e-01	ci right 1.057233e-01	k: 91417	n:870000
KS ci ratio: 1.593151e-01	ci left: 6.399999e-04	ci right 7.518735e-04	k: 604	n:870000
ZDHHC17   870000 perm   494 sec   (1761 perm/sec)   p_kst 6.942529e-04   p_cons 1.050770e-01   p_joint 6.942529e-04

Joint ci ratio: 1.584014e-01	ci left: 6.403655e-04	ci right 7.516000e-04	k: 611	n:880000
Cons ci ratio: 1.219459e-02	ci left: 1.044430e-01	ci right 1.057255e-01	k: 92473	n:880000
KS ci ratio: 1.584014e-01	ci left: 6.403655e-04	ci right 7.516000e-04	k: 611	n:880000
ZDHHC17   880000 perm   503 sec   (1748 perm/sec)   p_kst 6.943182e-04   p_cons 1.050830e-01   p_joint 6.943182e-04

Joint ci ratio: 1.576307e-01	ci left: 6.396454e-04	ci right 7.501630e-04	k: 617	n:890000
Cons ci ratio: 1.212921e-02	ci left: 1.043952e-01	ci right 1.056703e-01	k: 93478	n:890000
KS ci ratio: 1.576307e-01	ci left: 6.396454e-04	ci right 7.501630e-04	k: 617	n:890000
ZDHHC17   890000 perm   513 sec   (1735 perm/sec)   p_kst 6.932584e-04   p_cons 1.050315e-01   p_joint 6.932584e-04

Joint ci ratio: 1.566201e-01	ci left: 6.410777e-04	ci right 7.510659e-04	k: 625	n:900000
Cons ci ratio: 1.205952e-02	ci left: 1.044317e-01	ci right 1.056998e-01	k: 94558	n:900000
KS ci ratio: 1.566201e-01	ci left: 6.410777e-04	ci right 7.510659e-04	k: 625	n:900000
ZDHHC17   900000 perm   523 sec   (1722 perm/sec)   p_kst 6.944444e-04   p_cons 1.050644e-01   p_joint 6.944444e-04

Joint ci ratio: 1.555061e-01	ci left: 6.435368e-04	ci right 7.530884e-04	k: 634	n:910000
Cons ci ratio: 1.199326e-02	ci left: 1.044322e-01	ci right 1.056934e-01	k: 95606	n:910000
KS ci ratio: 1.555061e-01	ci left: 6.435368e-04	ci right 7.530884e-04	k: 634	n:910000
ZDHHC17   910000 perm   532 sec   (1709 perm/sec)   p_kst 6.967033e-04   p_cons 1.050615e-01   p_joint 6.967033e-04

Joint ci ratio: 1.551404e-01	ci left: 6.396759e-04	ci right 7.482903e-04	k: 637	n:920000
Cons ci ratio: 1.192740e-02	ci left: 1.044437e-01	ci right 1.056979e-01	k: 96664	n:920000
KS ci ratio: 1.551404e-01	ci left: 6.396759e-04	ci right 7.482903e-04	k: 637	n:920000
ZDHHC17   920000 perm   542 sec   (1696 perm/sec)   p_kst 6.923913e-04   p_cons 1.050696e-01   p_joint 6.923913e-04

Joint ci ratio: 1.540574e-01	ci left: 6.421007e-04	ci right 7.502956e-04	k: 646	n:930000
Cons ci ratio: 1.186301e-02	ci left: 1.044484e-01	ci right 1.056960e-01	k: 97716	n:930000
KS ci ratio: 1.540574e-01	ci left: 6.421007e-04	ci right 7.502956e-04	k: 646	n:930000
ZDHHC17   930000 perm   552 sec   (1684 perm/sec)   p_kst 6.946237e-04   p_cons 1.050710e-01   p_joint 6.946237e-04

Joint ci ratio: 1.529968e-01	ci left: 6.444766e-04	ci right 7.522556e-04	k: 655	n:940000
Cons ci ratio: 1.179385e-02	ci left: 1.045454e-01	ci right 1.057868e-01	k: 98855	n:940000
KS ci ratio: 1.529968e-01	ci left: 6.444766e-04	ci right 7.522556e-04	k: 655	n:940000
ZDHHC17   940000 perm   562 sec   (1672 perm/sec)   p_kst 6.968085e-04   p_cons 1.051649e-01   p_joint 6.968085e-04

Joint ci ratio: 1.526485e-01	ci left: 6.407297e-04	ci right 7.476158e-04	k: 658	n:950000
Cons ci ratio: 1.173323e-02	ci left: 1.045228e-01	ci right 1.057575e-01	k: 99882	n:950000
KS ci ratio: 1.526485e-01	ci left: 6.407297e-04	ci right 7.476158e-04	k: 658	n:950000
ZDHHC17   950000 perm   572 sec   (1661 perm/sec)   p_kst 6.926316e-04   p_cons 1.051389e-01   p_joint 6.926316e-04

Joint ci ratio: 1.515031e-01	ci left: 6.440758e-04	ci right 7.506408e-04	k: 668	n:960000
Cons ci ratio: 1.167108e-02	ci left: 1.045402e-01	ci right 1.057685e-01	k: 100947	n:960000
KS ci ratio: 1.515031e-01	ci left: 6.440758e-04	ci right 7.506408e-04	k: 668	n:960000
ZDHHC17   960000 perm   582 sec   (1649 perm/sec)   p_kst 6.958333e-04   p_cons 1.051531e-01   p_joint 6.958333e-04

Joint ci ratio: 1.506052e-01	ci left: 6.453716e-04	ci right 7.514611e-04	k: 676	n:970000
Cons ci ratio: 1.161392e-02	ci left: 1.044924e-01	ci right 1.057141e-01	k: 101949	n:970000
KS ci ratio: 1.506052e-01	ci left: 6.453716e-04	ci right 7.514611e-04	k: 676	n:970000
ZDHHC17   970000 perm   592 sec   (1637 perm/sec)   p_kst 6.969072e-04   p_cons 1.051021e-01   p_joint 6.969072e-04

Joint ci ratio: 1.502729e-01	ci left: 6.417320e-04	ci right 7.469696e-04	k: 679	n:980000
Cons ci ratio: 1.155357e-02	ci left: 1.045108e-01	ci right 1.057263e-01	k: 103015	n:980000
KS ci ratio: 1.502729e-01	ci left: 6.417320e-04	ci right 7.469696e-04	k: 679	n:980000
ZDHHC17   980000 perm   603 sec   (1627 perm/sec)   p_kst 6.928571e-04   p_cons 1.051173e-01   p_joint 6.928571e-04

Joint ci ratio: 1.498331e-01	ci left: 6.391385e-04	ci right 7.436166e-04	k: 683	n:990000
Cons ci ratio: 1.149286e-02	ci left: 1.045499e-01	ci right 1.057594e-01	k: 104102	n:990000
KS ci ratio: 1.498331e-01	ci left: 6.391385e-04	ci right 7.436166e-04	k: 683	n:990000
ZDHHC17   990000 perm   613 sec   (1615 perm/sec)   p_kst 6.898990e-04   p_cons 1.051535e-01   p_joint 6.898990e-04

Joint ci ratio: 1.490722e-01	ci left: 6.394854e-04	ci right 7.434420e-04	k: 690	n:1000000
Cons ci ratio: 1.143711e-02	ci left: 1.045225e-01	ci right 1.057258e-01	k: 105123	n:1000000
KS ci ratio: 1.490722e-01	ci left: 6.394854e-04	ci right 7.434420e-04	k: 690	n:1000000
ZDHHC17   1000000 perm   623 sec   (1604 perm/sec)   p_kst 6.900000e-04   p_cons 1.051230e-01   p_joint 6.900000e-04

Joint ci ratio: 1.485359e-01	ci left: 6.379200e-04	ci right 7.412159e-04	k: 695	n:1010000
Cons ci ratio: 1.138031e-02	ci left: 1.045262e-01	ci right 1.057236e-01	k: 106175	n:1010000
KS ci ratio: 1.485359e-01	ci left: 6.379200e-04	ci right 7.412159e-04	k: 695	n:1010000
ZDHHC17   1010000 perm   634 sec   (1593 perm/sec)   p_kst 6.881188e-04   p_cons 1.051238e-01   p_joint 6.881188e-04

Joint ci ratio: 1.478999e-01	ci left: 6.373301e-04	ci right 7.400494e-04	k: 701	n:1020000
Cons ci ratio: 1.132458e-02	ci left: 1.045260e-01	ci right 1.057174e-01	k: 107223	n:1020000
KS ci ratio: 1.478999e-01	ci left: 6.373301e-04	ci right 7.400494e-04	k: 701	n:1020000
ZDHHC17   1020000 perm   644 sec   (1583 perm/sec)   p_kst 6.872549e-04   p_cons 1.051206e-01   p_joint 6.872549e-04

Joint ci ratio: 1.468574e-01	ci left: 6.404932e-04	ci right 7.429309e-04	k: 711	n:1030000
Cons ci ratio: 1.127134e-02	ci left: 1.044977e-01	ci right 1.056832e-01	k: 108242	n:1030000
KS ci ratio: 1.468574e-01	ci left: 6.404932e-04	ci right 7.429309e-04	k: 711	n:1030000
ZDHHC17   1030000 perm   655 sec   (1572 perm/sec)   p_kst 6.902913e-04   p_cons 1.050893e-01   p_joint 6.902913e-04

Joint ci ratio: 1.460391e-01	ci left: 6.417451e-04	ci right 7.437613e-04	k: 719	n:1040000
Cons ci ratio: 1.121564e-02	ci left: 1.045237e-01	ci right 1.057035e-01	k: 109317	n:1040000
KS ci ratio: 1.460391e-01	ci left: 6.417451e-04	ci right 7.437613e-04	k: 719	n:1040000
ZDHHC17   1040000 perm   666 sec   (1562 perm/sec)   p_kst 6.913462e-04   p_cons 1.051125e-01   p_joint 6.913462e-04

Joint ci ratio: 1.452344e-01	ci left: 6.429747e-04	ci right 7.445743e-04	k: 727	n:1050000
Cons ci ratio: 1.116505e-02	ci left: 1.044770e-01	ci right 1.056509e-01	k: 110316	n:1050000
KS ci ratio: 1.452344e-01	ci left: 6.429747e-04	ci right 7.445743e-04	k: 727	n:1050000
ZDHHC17   1050000 perm   676 sec   (1552 perm/sec)   p_kst 6.923810e-04   p_cons 1.050629e-01   p_joint 6.923810e-04

Joint ci ratio: 1.447384e-01	ci left: 6.414547e-04	ci right 7.424380e-04	k: 732	n:1060000
Cons ci ratio: 1.111146e-02	ci left: 1.044933e-01	ci right 1.056617e-01	k: 111381	n:1060000
KS ci ratio: 1.447384e-01	ci left: 6.414547e-04	ci right 7.424380e-04	k: 732	n:1060000
ZDHHC17   1060000 perm   687 sec   (1542 perm/sec)   p_kst 6.905660e-04   p_cons 1.050764e-01   p_joint 6.905660e-04

Joint ci ratio: 1.441497e-01	ci left: 6.408646e-04	ci right 7.413094e-04	k: 738	n:1070000
Cons ci ratio: 1.106039e-02	ci left: 1.044794e-01	ci right 1.056423e-01	k: 112414	n:1070000
KS ci ratio: 1.441497e-01	ci left: 6.408646e-04	ci right 7.413094e-04	k: 738	n:1070000
ZDHHC17   1070000 perm   698 sec   (1532 perm/sec)   p_kst 6.897196e-04   p_cons 1.050598e-01   p_joint 6.897196e-04

Joint ci ratio: 1.431839e-01	ci left: 6.438572e-04	ci right 7.440372e-04	k: 748	n:1080000
Cons ci ratio: 1.101008e-02	ci left: 1.044649e-01	ci right 1.056224e-01	k: 113446	n:1080000
KS ci ratio: 1.431839e-01	ci left: 6.438572e-04	ci right 7.440372e-04	k: 748	n:1080000
ZDHHC17   1080000 perm   709 sec   (1522 perm/sec)   p_kst 6.925926e-04   p_cons 1.050426e-01   p_joint 6.925926e-04

Joint ci ratio: 1.422374e-01	ci left: 6.467971e-04	ci right 7.467127e-04	k: 758	n:1090000
Cons ci ratio: 1.096017e-02	ci left: 1.044553e-01	ci right 1.056074e-01	k: 114483	n:1090000
KS ci ratio: 1.422374e-01	ci left: 6.467971e-04	ci right 7.467127e-04	k: 758	n:1090000
ZDHHC17   1090000 perm   721 sec   (1513 perm/sec)   p_kst 6.954128e-04   p_cons 1.050303e-01   p_joint 6.954128e-04

Joint ci ratio: 1.414014e-01	ci left: 6.488086e-04	ci right 7.483963e-04	k: 767	n:1100000
Cons ci ratio: 1.090984e-02	ci left: 1.044649e-01	ci right 1.056117e-01	k: 115541	n:1100000
KS ci ratio: 1.414014e-01	ci left: 6.488086e-04	ci right 7.483963e-04	k: 767	n:1100000
ZDHHC17   1100000 perm   732 sec   (1503 perm/sec)   p_kst 6.972727e-04   p_cons 1.050373e-01   p_joint 6.972727e-04

Joint ci ratio: 1.403992e-01	ci left: 6.525242e-04	ci right 7.519129e-04	k: 778	n:1110000
Cons ci ratio: 1.085894e-02	ci left: 1.044959e-01	ci right 1.056377e-01	k: 116623	n:1110000
KS ci ratio: 1.403992e-01	ci left: 6.525242e-04	ci right 7.519129e-04	k: 778	n:1110000
ZDHHC17   1110000 perm   743 sec   (1493 perm/sec)   p_kst 7.009009e-04   p_cons 1.050658e-01   p_joint 7.009009e-04

Joint ci ratio: 1.397726e-01	ci left: 6.527290e-04	ci right 7.516683e-04	k: 785	n:1120000
Cons ci ratio: 1.081023e-02	ci left: 1.045005e-01	ci right 1.056372e-01	k: 117676	n:1120000
KS ci ratio: 1.397726e-01	ci left: 6.527290e-04	ci right 7.516683e-04	k: 785	n:1120000
ZDHHC17   1120000 perm   755 sec   (1483 perm/sec)   p_kst 7.008929e-04   p_cons 1.050679e-01   p_joint 7.008929e-04

Joint ci ratio: 1.393303e-01	ci left: 6.512229e-04	ci right 7.495956e-04	k: 790	n:1130000
Cons ci ratio: 1.076440e-02	ci left: 1.044663e-01	ci right 1.055977e-01	k: 118685	n:1130000
KS ci ratio: 1.393303e-01	ci left: 6.512229e-04	ci right 7.495956e-04	k: 790	n:1130000
ZDHHC17   1130000 perm   768 sec   (1471 perm/sec)   p_kst 6.991150e-04   p_cons 1.050310e-01   p_joint 6.991150e-04

Joint ci ratio: 1.388049e-01	ci left: 6.505905e-04	ci right 7.484664e-04	k: 796	n:1140000
Cons ci ratio: 1.071650e-02	ci left: 1.044790e-01	ci right 1.056055e-01	k: 119747	n:1140000
KS ci ratio: 1.388049e-01	ci left: 6.505905e-04	ci right 7.484664e-04	k: 796	n:1140000
ZDHHC17   1140000 perm   780 sec   (1462 perm/sec)   p_kst 6.982456e-04   p_cons 1.050412e-01   p_joint 6.982456e-04

Joint ci ratio: 1.377713e-01	ci left: 6.550070e-04	ci right 7.527534e-04	k: 808	n:1150000
Cons ci ratio: 1.066993e-02	ci left: 1.044793e-01	ci right 1.056009e-01	k: 120795	n:1150000
KS ci ratio: 1.377713e-01	ci left: 6.550070e-04	ci right 7.527534e-04	k: 808	n:1150000
ZDHHC17   1150000 perm   791 sec   (1453 perm/sec)   p_kst 7.026087e-04   p_cons 1.050391e-01   p_joint 7.026087e-04

Joint ci ratio: 1.370112e-01	ci left: 6.568524e-04	ci right 7.542892e-04	k: 817	n:1160000
Cons ci ratio: 1.062191e-02	ci left: 1.045158e-01	ci right 1.056327e-01	k: 121885	n:1160000
KS ci ratio: 1.370112e-01	ci left: 6.568524e-04	ci right 7.542892e-04	k: 817	n:1160000
ZDHHC17   1160000 perm   803 sec   (1444 perm/sec)   p_kst 7.043103e-04   p_cons 1.050733e-01   p_joint 7.043103e-04

Joint ci ratio: 1.361811e-01	ci left: 6.594933e-04	ci right 7.566812e-04	k: 827	n:1170000
Cons ci ratio: 1.057597e-02	ci left: 1.045261e-01	ci right 1.056383e-01	k: 122945	n:1170000
KS ci ratio: 1.361811e-01	ci left: 6.594933e-04	ci right 7.566812e-04	k: 827	n:1170000
ZDHHC17   1170000 perm   815 sec   (1436 perm/sec)   p_kst 7.068376e-04   p_cons 1.050812e-01   p_joint 7.068376e-04

Joint ci ratio: 1.356905e-01	ci left: 6.588161e-04	ci right 7.555262e-04	k: 833	n:1180000
Cons ci ratio: 1.053120e-02	ci left: 1.045261e-01	ci right 1.056335e-01	k: 123993	n:1180000
KS ci ratio: 1.356905e-01	ci left: 6.588161e-04	ci right 7.555262e-04	k: 833	n:1180000
ZDHHC17   1180000 perm   827 sec   (1427 perm/sec)   p_kst 7.059322e-04   p_cons 1.050788e-01   p_joint 7.059322e-04

Joint ci ratio: 1.353664e-01	ci left: 6.565272e-04	ci right 7.526525e-04	k: 837	n:1190000
Cons ci ratio: 1.048760e-02	ci left: 1.045152e-01	ci right 1.056179e-01	k: 125028	n:1190000
KS ci ratio: 1.353664e-01	ci left: 6.565272e-04	ci right 7.526525e-04	k: 837	n:1190000
ZDHHC17   1190000 perm   839 sec   (1418 perm/sec)   p_kst 7.033613e-04   p_cons 1.050655e-01   p_joint 7.033613e-04

Joint ci ratio: 1.349645e-01	ci left: 6.550819e-04	ci right 7.506880e-04	k: 842	n:1200000
Cons ci ratio: 1.044411e-02	ci left: 1.045119e-01	ci right 1.056100e-01	k: 126072	n:1200000
KS ci ratio: 1.349645e-01	ci left: 6.550819e-04	ci right 7.506880e-04	k: 842	n:1200000
ZDHHC17   1200000 perm   852 sec   (1409 perm/sec)   p_kst 7.016667e-04   p_cons 1.050600e-01   p_joint 7.016667e-04

Joint ci ratio: 1.344076e-01	ci left: 6.552582e-04	ci right 7.504639e-04	k: 849	n:1210000
Cons ci ratio: 1.039857e-02	ci left: 1.045557e-01	ci right 1.056495e-01	k: 127173	n:1210000
KS ci ratio: 1.344076e-01	ci left: 6.552582e-04	ci right 7.504639e-04	k: 849	n:1210000
ZDHHC17   1210000 perm   864 sec   (1401 perm/sec)   p_kst 7.016529e-04   p_cons 1.051017e-01   p_joint 7.016529e-04

Joint ci ratio: 1.340926e-01	ci left: 6.530557e-04	ci right 7.477013e-04	k: 853	n:1220000
Cons ci ratio: 1.035609e-02	ci left: 1.045539e-01	ci right 1.056431e-01	k: 128219	n:1220000
KS ci ratio: 1.340926e-01	ci left: 6.530557e-04	ci right 7.477013e-04	k: 853	n:1220000
ZDHHC17   1220000 perm   876 sec   (1393 perm/sec)   p_kst 6.991803e-04   p_cons 1.050975e-01   p_joint 6.991803e-04

Joint ci ratio: 1.338579e-01	ci left: 6.501035e-04	ci right 7.441433e-04	k: 856	n:1230000
Cons ci ratio: 1.031190e-02	ci left: 1.045926e-01	ci right 1.056775e-01	k: 129315	n:1230000
KS ci ratio: 1.338579e-01	ci left: 6.501035e-04	ci right 7.441433e-04	k: 856	n:1230000
ZDHHC17   1230000 perm   888 sec   (1384 perm/sec)   p_kst 6.959350e-04   p_cons 1.051341e-01   p_joint 6.959350e-04

Joint ci ratio: 1.334693e-01	ci left: 6.487582e-04	ci right 7.423092e-04	k: 861	n:1240000
Cons ci ratio: 1.026937e-02	ci left: 1.046106e-01	ci right 1.056912e-01	k: 130386	n:1240000
KS ci ratio: 1.334693e-01	ci left: 6.487582e-04	ci right 7.423092e-04	k: 861	n:1240000
ZDHHC17   1240000 perm   901 sec   (1376 perm/sec)   p_kst 6.943548e-04   p_cons 1.051500e-01   p_joint 6.943548e-04

Joint ci ratio: 1.329306e-01	ci left: 6.489815e-04	ci right 7.421572e-04	k: 868	n:1250000
Cons ci ratio: 1.022849e-02	ci left: 1.046076e-01	ci right 1.056838e-01	k: 131431	n:1250000
KS ci ratio: 1.329306e-01	ci left: 6.489815e-04	ci right 7.421572e-04	k: 868	n:1250000
ZDHHC17   1250000 perm   914 sec   (1368 perm/sec)   p_kst 6.944000e-04   p_cons 1.051448e-01   p_joint 6.944000e-04

Joint ci ratio: 1.324741e-01	ci left: 6.484347e-04	ci right 7.411870e-04	k: 874	n:1260000
Cons ci ratio: 1.018827e-02	ci left: 1.046014e-01	ci right 1.056734e-01	k: 132472	n:1260000
KS ci ratio: 1.324741e-01	ci left: 6.484347e-04	ci right 7.411870e-04	k: 874	n:1260000
ZDHHC17   1260000 perm   926 sec   (1360 perm/sec)   p_kst 6.936508e-04   p_cons 1.051365e-01   p_joint 6.936508e-04

Joint ci ratio: 1.319474e-01	ci left: 6.486584e-04	ci right 7.410448e-04	k: 881	n:1270000
Cons ci ratio: 1.014746e-02	ci left: 1.046151e-01	ci right 1.056828e-01	k: 133538	n:1270000
KS ci ratio: 1.319474e-01	ci left: 6.486584e-04	ci right 7.410448e-04	k: 881	n:1270000
ZDHHC17   1270000 perm   939 sec   (1352 perm/sec)   p_kst 6.937008e-04   p_cons 1.051480e-01   p_joint 6.937008e-04

Joint ci ratio: 1.315751e-01	ci left: 6.473682e-04	ci right 7.392904e-04	k: 886	n:1280000
Cons ci ratio: 1.010642e-02	ci left: 1.046417e-01	ci right 1.057054e-01	k: 134621	n:1280000
KS ci ratio: 1.315751e-01	ci left: 6.473682e-04	ci right 7.392904e-04	k: 886	n:1280000
ZDHHC17   1280000 perm   952 sec   (1344 perm/sec)   p_kst 6.921875e-04   p_cons 1.051727e-01   p_joint 6.921875e-04

Joint ci ratio: 1.309856e-01	ci left: 6.483478e-04	ci right 7.399646e-04	k: 894	n:1290000
Cons ci ratio: 1.006708e-02	ci left: 1.046455e-01	ci right 1.057051e-01	k: 135675	n:1290000
KS ci ratio: 1.309856e-01	ci left: 6.483478e-04	ci right 7.399646e-04	k: 894	n:1290000
ZDHHC17   1290000 perm   965 sec   (1336 perm/sec)   p_kst 6.930233e-04   p_cons 1.051744e-01   p_joint 6.930233e-04

Joint ci ratio: 1.306214e-01	ci left: 6.470807e-04	ci right 7.382445e-04	k: 899	n:1300000
Cons ci ratio: 1.002639e-02	ci left: 1.046831e-01	ci right 1.057387e-01	k: 136773	n:1300000
KS ci ratio: 1.306214e-01	ci left: 6.470807e-04	ci right 7.382445e-04	k: 899	n:1300000
ZDHHC17   1300000 perm   978 sec   (1329 perm/sec)   p_kst 6.915385e-04   p_cons 1.052100e-01   p_joint 6.915385e-04

Joint ci ratio: 1.299015e-01	ci left: 6.495261e-04	ci right 7.404912e-04	k: 909	n:1310000
Cons ci ratio: 9.987768e-03	ci left: 1.046903e-01	ci right 1.057419e-01	k: 137832	n:1310000
KS ci ratio: 1.299015e-01	ci left: 6.495261e-04	ci right 7.404912e-04	k: 909	n:1310000
ZDHHC17   1310000 perm   991 sec   (1322 perm/sec)   p_kst 6.938931e-04   p_cons 1.052153e-01   p_joint 6.938931e-04

Joint ci ratio: 1.295462e-01	ci left: 6.482704e-04	ci right 7.387922e-04	k: 914	n:1320000
Cons ci ratio: 9.950230e-03	ci left: 1.046854e-01	ci right 1.057330e-01	k: 138875	n:1320000
KS ci ratio: 1.295462e-01	ci left: 6.482704e-04	ci right 7.387922e-04	k: 914	n:1320000
ZDHHC17   1320000 perm   1004 sec   (1314 perm/sec)   p_kst 6.924242e-04   p_cons 1.052083e-01   p_joint 6.924242e-04

Joint ci ratio: 1.291938e-01	ci left: 6.470338e-04	ci right 7.371184e-04	k: 919	n:1330000
Cons ci ratio: 9.912044e-03	ci left: 1.047008e-01	ci right 1.057445e-01	k: 139945	n:1330000
KS ci ratio: 1.291938e-01	ci left: 6.470338e-04	ci right 7.371184e-04	k: 919	n:1330000
ZDHHC17   1330000 perm   1018 sec   (1307 perm/sec)   p_kst 6.909774e-04   p_cons 1.052218e-01   p_joint 6.909774e-04

Joint ci ratio: 1.289839e-01	ci left: 6.443717e-04	ci right 7.339286e-04	k: 922	n:1340000
Cons ci ratio: 9.874607e-03	ci left: 1.047100e-01	ci right 1.057499e-01	k: 141007	n:1340000
KS ci ratio: 1.289839e-01	ci left: 6.443717e-04	ci right 7.339286e-04	k: 922	n:1340000
ZDHHC17   1340000 perm   1031 sec   (1299 perm/sec)   p_kst 6.880597e-04   p_cons 1.052291e-01   p_joint 6.880597e-04

Joint ci ratio: 1.284285e-01	ci left: 6.453337e-04	ci right 7.346087e-04	k: 930	n:1350000
Cons ci ratio: 9.837436e-03	ci left: 1.047221e-01	ci right 1.057581e-01	k: 142073	n:1350000
KS ci ratio: 1.284285e-01	ci left: 6.453337e-04	ci right 7.346087e-04	k: 930	n:1350000
ZDHHC17   1350000 perm   1045 sec   (1292 perm/sec)   p_kst 6.888889e-04   p_cons 1.052393e-01   p_joint 6.888889e-04

Joint ci ratio: 1.280851e-01	ci left: 6.441471e-04	ci right 7.330016e-04	k: 935	n:1360000
Cons ci ratio: 9.802404e-03	ci left: 1.047010e-01	ci right 1.057331e-01	k: 143094	n:1360000
KS ci ratio: 1.280851e-01	ci left: 6.441471e-04	ci right 7.330016e-04	k: 935	n:1360000
ZDHHC17   1360000 perm   1058 sec   (1285 perm/sec)   p_kst 6.875000e-04   p_cons 1.052162e-01   p_joint 6.875000e-04

Joint ci ratio: 1.276765e-01	ci left: 6.436847e-04	ci right 7.321708e-04	k: 941	n:1370000
Cons ci ratio: 9.765623e-03	ci left: 1.047209e-01	ci right 1.057493e-01	k: 144171	n:1370000
KS ci ratio: 1.276765e-01	ci left: 6.436847e-04	ci right 7.321708e-04	k: 941	n:1370000
ZDHHC17   1370000 perm   1072 sec   (1278 perm/sec)   p_kst 6.868613e-04   p_cons 1.052343e-01   p_joint 6.868613e-04

Joint ci ratio: 1.270041e-01	ci left: 6.460360e-04	ci right 7.343422e-04	k: 951	n:1380000
Cons ci ratio: 9.731238e-03	ci left: 1.047023e-01	ci right 1.057269e-01	k: 145195	n:1380000
KS ci ratio: 1.270041e-01	ci left: 6.460360e-04	ci right 7.343422e-04	k: 951	n:1380000
ZDHHC17   1380000 perm   1086 sec   (1271 perm/sec)   p_kst 6.891304e-04   p_cons 1.052138e-01   p_joint 6.891304e-04

Joint ci ratio: 1.268046e-01	ci left: 6.434779e-04	ci right 7.312860e-04	k: 954	n:1390000
Cons ci ratio: 9.699437e-03	ci left: 1.046409e-01	ci right 1.056615e-01	k: 146159	n:1390000
KS ci ratio: 1.268046e-01	ci left: 6.434779e-04	ci right 7.312860e-04	k: 954	n:1390000
ZDHHC17   1390000 perm   1099 sec   (1265 perm/sec)   p_kst 6.863309e-04   p_cons 1.051504e-01   p_joint 6.863309e-04

Joint ci ratio: 1.262767e-01	ci left: 6.444151e-04	ci right 7.319576e-04	k: 962	n:1400000
Cons ci ratio: 9.667102e-03	ci left: 1.045967e-01	ci right 1.056135e-01	k: 147146	n:1400000
KS ci ratio: 1.262767e-01	ci left: 6.444151e-04	ci right 7.319576e-04	k: 962	n:1400000
ZDHHC17   1400000 perm   1113 sec   (1258 perm/sec)   p_kst 6.871429e-04   p_cons 1.051043e-01   p_joint 6.871429e-04

Joint ci ratio: 1.254327e-01	ci left: 6.487744e-04	ci right 7.362763e-04	k: 975	n:1410000
Cons ci ratio: 9.632944e-03	ci left: 1.045950e-01	ci right 1.056081e-01	k: 148192	n:1410000
KS ci ratio: 1.254327e-01	ci left: 6.487744e-04	ci right 7.362763e-04	k: 975	n:1410000
ZDHHC17   1410000 perm   1127 sec   (1251 perm/sec)   p_kst 6.914894e-04   p_cons 1.051007e-01   p_joint 6.914894e-04

Joint ci ratio: 1.249853e-01	ci left: 6.489808e-04	ci right 7.361751e-04	k: 982	n:1420000
Cons ci ratio: 9.597923e-03	ci left: 1.046171e-01	ci right 1.056267e-01	k: 149272	n:1420000
KS ci ratio: 1.249853e-01	ci left: 6.489808e-04	ci right 7.361751e-04	k: 982	n:1420000
ZDHHC17   1420000 perm   1142 sec   (1244 perm/sec)   p_kst 6.915493e-04   p_cons 1.051211e-01   p_joint 6.915493e-04

Joint ci ratio: 1.243542e-01	ci left: 6.512174e-04	ci right 7.382380e-04	k: 992	n:1430000
Cons ci ratio: 9.564206e-03	ci left: 1.046208e-01	ci right 1.056269e-01	k: 150326	n:1430000
KS ci ratio: 1.243542e-01	ci left: 6.512174e-04	ci right 7.382380e-04	k: 992	n:1430000
ZDHHC17   1430000 perm   1156 sec   (1237 perm/sec)   p_kst 6.937063e-04   p_cons 1.051231e-01   p_joint 6.937063e-04

Joint ci ratio: 1.238562e-01	ci left: 6.520782e-04	ci right 7.388392e-04	k: 1000	n:1440000
Cons ci ratio: 9.530174e-03	ci left: 1.046377e-01	ci right 1.056403e-01	k: 151399	n:1440000
KS ci ratio: 1.238562e-01	ci left: 6.520782e-04	ci right 7.388392e-04	k: 1000	n:1440000
ZDHHC17   1440000 perm   1170 sec   (1231 perm/sec)   p_kst 6.944444e-04   p_cons 1.051382e-01   p_joint 6.944444e-04

Joint ci ratio: 1.236096e-01	ci left: 6.502543e-04	ci right 7.365878e-04	k: 1004	n:1450000
Cons ci ratio: 9.499845e-03	ci left: 1.045882e-01	ci right 1.055872e-01	k: 152376	n:1450000
KS ci ratio: 1.236096e-01	ci left: 6.502543e-04	ci right 7.365878e-04	k: 1004	n:1450000
ZDHHC17   1450000 perm   1184 sec   (1224 perm/sec)   p_kst 6.924138e-04   p_cons 1.050869e-01   p_joint 6.924138e-04

Joint ci ratio: 1.231814e-01	ci left: 6.504470e-04	ci right 7.364851e-04	k: 1011	n:1460000
Cons ci ratio: 9.467147e-03	ci left: 1.045920e-01	ci right 1.055876e-01	k: 153430	n:1460000
KS ci ratio: 1.231814e-01	ci left: 6.504470e-04	ci right 7.364851e-04	k: 1011	n:1460000
ZDHHC17   1460000 perm   1199 sec   (1218 perm/sec)   p_kst 6.924658e-04   p_cons 1.050890e-01   p_joint 6.924658e-04

Joint ci ratio: 1.225172e-01	ci left: 6.532753e-04	ci right 7.391878e-04	k: 1022	n:1470000
Cons ci ratio: 9.435570e-03	ci left: 1.045802e-01	ci right 1.055723e-01	k: 154461	n:1470000
KS ci ratio: 1.225172e-01	ci left: 6.532753e-04	ci right 7.391878e-04	k: 1022	n:1470000
ZDHHC17   1470000 perm   1213 sec   (1212 perm/sec)   p_kst 6.952381e-04   p_cons 1.050755e-01   p_joint 6.952381e-04

Joint ci ratio: 1.221001e-01	ci left: 6.534463e-04	ci right 7.390676e-04	k: 1029	n:1480000
Cons ci ratio: 9.405186e-03	ci left: 1.045511e-01	ci right 1.055397e-01	k: 155466	n:1480000
KS ci ratio: 1.221001e-01	ci left: 6.534463e-04	ci right 7.390676e-04	k: 1029	n:1480000
ZDHHC17   1480000 perm   1227 sec   (1206 perm/sec)   p_kst 6.952703e-04   p_cons 1.050446e-01   p_joint 6.952703e-04

Joint ci ratio: 1.216873e-01	ci left: 6.536155e-04	ci right 7.389486e-04	k: 1036	n:1490000
Cons ci ratio: 9.374122e-03	ci left: 1.045417e-01	ci right 1.055270e-01	k: 156500	n:1490000
KS ci ratio: 1.216873e-01	ci left: 6.536155e-04	ci right 7.389486e-04	k: 1036	n:1490000
ZDHHC17   1490000 perm   1242 sec   (1200 perm/sec)   p_kst 6.953020e-04   p_cons 1.050336e-01   p_joint 6.953020e-04

Joint ci ratio: 1.212787e-01	ci left: 6.537830e-04	ci right 7.388307e-04	k: 1043	n:1500000
Cons ci ratio: 9.342139e-03	ci left: 1.045571e-01	ci right 1.055391e-01	k: 157571	n:1500000
KS ci ratio: 1.212787e-01	ci left: 6.537830e-04	ci right 7.388307e-04	k: 1043	n:1500000
ZDHHC17   1500000 perm   1257 sec   (1194 perm/sec)   p_kst 6.953333e-04   p_cons 1.050473e-01   p_joint 6.953333e-04

Joint ci ratio: 1.209894e-01	ci left: 6.526642e-04	ci right 7.373493e-04	k: 1048	n:1510000
Cons ci ratio: 9.310710e-03	ci left: 1.045677e-01	ci right 1.055464e-01	k: 158635	n:1510000
KS ci ratio: 1.209894e-01	ci left: 6.526642e-04	ci right 7.373493e-04	k: 1048	n:1510000
ZDHHC17   1510000 perm   1271 sec   (1188 perm/sec)   p_kst 6.940397e-04   p_cons 1.050563e-01   p_joint 6.940397e-04

Joint ci ratio: 1.203030e-01	ci left: 6.560269e-04	ci right 7.406311e-04	k: 1060	n:1520000
Cons ci ratio: 9.278979e-03	ci left: 1.045906e-01	ci right 1.055662e-01	k: 159718	n:1520000
KS ci ratio: 1.203030e-01	ci left: 6.560269e-04	ci right 7.406311e-04	k: 1060	n:1520000
ZDHHC17   1520000 perm   1286 sec   (1182 perm/sec)   p_kst 6.973684e-04   p_cons 1.050776e-01   p_joint 6.973684e-04

Joint ci ratio: 1.197959e-01	ci left: 6.574449e-04	ci right 7.418493e-04	k: 1069	n:1530000
Cons ci ratio: 9.249113e-03	ci left: 1.045819e-01	ci right 1.055543e-01	k: 160753	n:1530000
KS ci ratio: 1.197959e-01	ci left: 6.574449e-04	ci right 7.418493e-04	k: 1069	n:1530000
ZDHHC17   1530000 perm   1301 sec   (1176 perm/sec)   p_kst 6.986928e-04   p_cons 1.050673e-01   p_joint 6.986928e-04

Joint ci ratio: 1.194615e-01	ci left: 6.569553e-04	ci right 7.410447e-04	k: 1075	n:1540000
Cons ci ratio: 9.219852e-03	ci left: 1.045668e-01	ci right 1.055360e-01	k: 161778	n:1540000
KS ci ratio: 1.194615e-01	ci left: 6.569553e-04	ci right 7.410447e-04	k: 1075	n:1540000
ZDHHC17   1540000 perm   1316 sec   (1170 perm/sec)   p_kst 6.980519e-04   p_cons 1.050506e-01   p_joint 6.980519e-04

Joint ci ratio: 1.190748e-01	ci left: 6.570982e-04	ci right 7.409146e-04	k: 1082	n:1550000
Cons ci ratio: 9.189763e-03	ci left: 1.045745e-01	ci right 1.055406e-01	k: 162838	n:1550000
KS ci ratio: 1.190748e-01	ci left: 6.570982e-04	ci right 7.409146e-04	k: 1082	n:1550000
ZDHHC17   1550000 perm   1332 sec   (1164 perm/sec)   p_kst 6.980645e-04   p_cons 1.050568e-01   p_joint 6.980645e-04

Joint ci ratio: 1.186374e-01	ci left: 6.578618e-04	ci right 7.414457e-04	k: 1090	n:1560000
Cons ci ratio: 9.159811e-03	ci left: 1.045853e-01	ci right 1.055483e-01	k: 163903	n:1560000
KS ci ratio: 1.186374e-01	ci left: 6.578618e-04	ci right 7.414457e-04	k: 1090	n:1560000
ZDHHC17   1560000 perm   1347 sec   (1158 perm/sec)   p_kst 6.987179e-04   p_cons 1.050660e-01   p_joint 6.987179e-04

Joint ci ratio: 1.182586e-01	ci left: 6.579981e-04	ci right 7.413138e-04	k: 1097	n:1570000
Cons ci ratio: 9.130026e-03	ci left: 1.045984e-01	ci right 1.055584e-01	k: 164972	n:1570000
KS ci ratio: 1.182586e-01	ci left: 6.579981e-04	ci right 7.413138e-04	k: 1097	n:1570000
ZDHHC17   1570000 perm   1363 sec   (1152 perm/sec)   p_kst 6.987261e-04   p_cons 1.050777e-01   p_joint 6.987261e-04

Joint ci ratio: 1.177768e-01	ci left: 6.593617e-04	ci right 7.424862e-04	k: 1106	n:1580000
Cons ci ratio: 9.101173e-03	ci left: 1.045982e-01	ci right 1.055551e-01	k: 166020	n:1580000
KS ci ratio: 1.177768e-01	ci left: 6.593617e-04	ci right 7.424862e-04	k: 1106	n:1580000
ZDHHC17   1580000 perm   1378 sec   (1147 perm/sec)   p_kst 7.000000e-04   p_cons 1.050759e-01   p_joint 7.000000e-04

Joint ci ratio: 1.174062e-01	ci left: 6.594878e-04	ci right 7.423484e-04	k: 1113	n:1590000
Cons ci ratio: 9.073260e-03	ci left: 1.045842e-01	ci right 1.055380e-01	k: 167046	n:1590000
KS ci ratio: 1.174062e-01	ci left: 6.594878e-04	ci right 7.423484e-04	k: 1113	n:1590000
ZDHHC17   1590000 perm   1393 sec   (1142 perm/sec)   p_kst 7.000000e-04   p_cons 1.050604e-01   p_joint 7.000000e-04

Joint ci ratio: 1.168827e-01	ci left: 6.614329e-04	ci right 7.441417e-04	k: 1123	n:1600000
Cons ci ratio: 9.045571e-03	ci left: 1.045709e-01	ci right 1.055217e-01	k: 168073	n:1600000
KS ci ratio: 1.168827e-01	ci left: 6.614329e-04	ci right 7.441417e-04	k: 1123	n:1600000
ZDHHC17   1600000 perm   1408 sec   (1136 perm/sec)   p_kst 7.018750e-04   p_cons 1.050456e-01   p_joint 7.018750e-04

Joint ci ratio: 1.165720e-01	ci left: 6.609425e-04	ci right 7.433552e-04	k: 1129	n:1610000
Cons ci ratio: 9.018492e-03	ci left: 1.045504e-01	ci right 1.054982e-01	k: 169088	n:1610000
KS ci ratio: 1.165720e-01	ci left: 6.609425e-04	ci right 7.433552e-04	k: 1129	n:1610000
ZDHHC17   1610000 perm   1423 sec   (1131 perm/sec)   p_kst 7.012422e-04   p_cons 1.050236e-01   p_joint 7.012422e-04

Joint ci ratio: 1.163150e-01	ci left: 6.598591e-04	ci right 7.419429e-04	k: 1134	n:1620000
Cons ci ratio: 8.990651e-03	ci left: 1.045511e-01	ci right 1.054960e-01	k: 170137	n:1620000
KS ci ratio: 1.163150e-01	ci left: 6.598591e-04	ci right 7.419429e-04	k: 1134	n:1620000
ZDHHC17   1620000 perm   1439 sec   (1126 perm/sec)   p_kst 7.000000e-04   p_cons 1.050228e-01   p_joint 7.000000e-04

Joint ci ratio: 1.160597e-01	ci left: 6.587892e-04	ci right 7.405477e-04	k: 1139	n:1630000
Cons ci ratio: 8.964704e-03	ci left: 1.045175e-01	ci right 1.054593e-01	k: 171130	n:1630000
KS ci ratio: 1.160597e-01	ci left: 6.587892e-04	ci right 7.405477e-04	k: 1139	n:1630000
ZDHHC17   1630000 perm   1455 sec   (1120 perm/sec)   p_kst 6.987730e-04   p_cons 1.049877e-01   p_joint 6.987730e-04

Joint ci ratio: 1.155539e-01	ci left: 6.606931e-04	ci right 7.423062e-04	k: 1149	n:1640000
Cons ci ratio: 8.938082e-03	ci left: 1.045032e-01	ci right 1.054421e-01	k: 172154	n:1640000
KS ci ratio: 1.155539e-01	ci left: 6.606931e-04	ci right 7.423062e-04	k: 1149	n:1640000
ZDHHC17   1640000 perm   1471 sec   (1115 perm/sec)   p_kst 7.006098e-04   p_cons 1.049720e-01   p_joint 7.006098e-04

Joint ci ratio: 1.150051e-01	ci left: 6.631634e-04	ci right 7.446662e-04	k: 1160	n:1650000
Cons ci ratio: 8.911063e-03	ci left: 1.045024e-01	ci right 1.054384e-01	k: 173200	n:1650000
KS ci ratio: 1.150051e-01	ci left: 6.631634e-04	ci right 7.446662e-04	k: 1160	n:1650000
ZDHHC17   1650000 perm   1486 sec   (1110 perm/sec)   p_kst 7.030303e-04   p_cons 1.049697e-01   p_joint 7.030303e-04

Joint ci ratio: 1.147091e-01	ci left: 6.626791e-04	ci right 7.438985e-04	k: 1166	n:1660000
Cons ci ratio: 8.884743e-03	ci left: 1.044920e-01	ci right 1.054251e-01	k: 174230	n:1660000
KS ci ratio: 1.147091e-01	ci left: 6.626791e-04	ci right 7.438985e-04	k: 1166	n:1660000
ZDHHC17   1660000 perm   1503 sec   (1105 perm/sec)   p_kst 7.024096e-04   p_cons 1.049578e-01   p_joint 7.024096e-04

Joint ci ratio: 1.144154e-01	ci left: 6.622008e-04	ci right 7.431398e-04	k: 1172	n:1670000
Cons ci ratio: 8.858513e-03	ci left: 1.044846e-01	ci right 1.054149e-01	k: 175265	n:1670000
KS ci ratio: 1.144154e-01	ci left: 6.622008e-04	ci right 7.431398e-04	k: 1172	n:1670000
ZDHHC17   1670000 perm   1519 sec   (1100 perm/sec)   p_kst 7.017964e-04   p_cons 1.049491e-01   p_joint 7.017964e-04

Joint ci ratio: 1.140755e-01	ci left: 6.623067e-04	ci right 7.430020e-04	k: 1179	n:1680000
Cons ci ratio: 8.833803e-03	ci left: 1.044501e-01	ci right 1.053775e-01	k: 176254	n:1680000
KS ci ratio: 1.140755e-01	ci left: 6.623067e-04	ci right 7.430020e-04	k: 1179	n:1680000
ZDHHC17   1680000 perm   1534 sec   (1095 perm/sec)   p_kst 7.017857e-04   p_cons 1.049131e-01   p_joint 7.017857e-04

Joint ci ratio: 1.137386e-01	ci left: 6.624118e-04	ci right 7.428655e-04	k: 1186	n:1690000
Cons ci ratio: 8.806467e-03	ci left: 1.044762e-01	ci right 1.054009e-01	k: 177345	n:1690000
KS ci ratio: 1.137386e-01	ci left: 6.624118e-04	ci right 7.428655e-04	k: 1186	n:1690000
ZDHHC17   1690000 perm   1551 sec   (1090 perm/sec)   p_kst 7.017751e-04   p_cons 1.049379e-01   p_joint 7.017751e-04

Joint ci ratio: 1.136431e-01	ci left: 6.596582e-04	ci right 7.397057e-04	k: 1188	n:1700000
Cons ci ratio: 8.780593e-03	ci left: 1.044762e-01	ci right 1.053981e-01	k: 178392	n:1700000
KS ci ratio: 1.136431e-01	ci left: 6.596582e-04	ci right 7.397057e-04	k: 1188	n:1700000
ZDHHC17   1700000 perm   1568 sec   (1084 perm/sec)   p_kst 6.988235e-04   p_cons 1.049365e-01   p_joint 6.988235e-04

Joint ci ratio: 1.133575e-01	ci left: 6.592097e-04	ci right 7.389883e-04	k: 1194	n:1710000
Cons ci ratio: 8.753720e-03	ci left: 1.045024e-01	ci right 1.054218e-01	k: 179484	n:1710000
KS ci ratio: 1.133575e-01	ci left: 6.592097e-04	ci right 7.389883e-04	k: 1194	n:1710000
ZDHHC17   1710000 perm   1584 sec   (1079 perm/sec)   p_kst 6.982456e-04   p_cons 1.049614e-01   p_joint 6.982456e-04

Joint ci ratio: 1.130740e-01	ci left: 6.587667e-04	ci right 7.382789e-04	k: 1200	n:1720000
Cons ci ratio: 8.728252e-03	ci left: 1.045034e-01	ci right 1.054201e-01	k: 180533	n:1720000
KS ci ratio: 1.130740e-01	ci left: 6.587667e-04	ci right 7.382789e-04	k: 1200	n:1720000
ZDHHC17   1720000 perm   1601 sec   (1074 perm/sec)   p_kst 6.976744e-04   p_cons 1.049610e-01   p_joint 6.976744e-04

Joint ci ratio: 1.127926e-01	ci left: 6.583290e-04	ci right 7.375776e-04	k: 1206	n:1730000
Cons ci ratio: 8.703809e-03	ci left: 1.044870e-01	ci right 1.054010e-01	k: 181552	n:1730000
KS ci ratio: 1.127926e-01	ci left: 6.583290e-04	ci right 7.375776e-04	k: 1206	n:1730000
ZDHHC17   1730000 perm   1618 sec   (1069 perm/sec)   p_kst 6.971098e-04   p_cons 1.049434e-01   p_joint 6.971098e-04

Joint ci ratio: 1.125134e-01	ci left: 6.578966e-04	ci right 7.368840e-04	k: 1212	n:1740000
Cons ci ratio: 8.677500e-03	ci left: 1.045156e-01	ci right 1.054271e-01	k: 182649	n:1740000
KS ci ratio: 1.125134e-01	ci left: 6.578966e-04	ci right 7.368840e-04	k: 1212	n:1740000
ZDHHC17   1740000 perm   1635 sec   (1065 perm/sec)   p_kst 6.965517e-04   p_cons 1.049707e-01   p_joint 6.965517e-04

Joint ci ratio: 1.121901e-01	ci left: 6.580248e-04	ci right 7.367856e-04	k: 1219	n:1750000
Cons ci ratio: 8.652848e-03	ci left: 1.045131e-01	ci right 1.054219e-01	k: 183692	n:1750000
KS ci ratio: 1.121901e-01	ci left: 6.580248e-04	ci right 7.367856e-04	k: 1219	n:1750000
ZDHHC17   1750000 perm   1651 sec   (1060 perm/sec)   p_kst 6.965714e-04   p_cons 1.049669e-01   p_joint 6.965714e-04

Joint ci ratio: 1.120984e-01	ci left: 6.553904e-04	ci right 7.337676e-04	k: 1221	n:1760000
Cons ci ratio: 8.628640e-03	ci left: 1.045055e-01	ci right 1.054117e-01	k: 184726	n:1760000
KS ci ratio: 1.120984e-01	ci left: 6.553904e-04	ci right 7.337676e-04	k: 1221	n:1760000
ZDHHC17   1760000 perm   1668 sec   (1055 perm/sec)   p_kst 6.937500e-04   p_cons 1.049580e-01   p_joint 6.937500e-04

Joint ci ratio: 1.119612e-01	ci left: 6.533351e-04	ci right 7.313645e-04	k: 1224	n:1770000
Cons ci ratio: 8.604453e-03	ci left: 1.045019e-01	ci right 1.054056e-01	k: 185767	n:1770000
KS ci ratio: 1.119612e-01	ci left: 6.533351e-04	ci right 7.313645e-04	k: 1224	n:1770000
ZDHHC17   1770000 perm   1685 sec   (1050 perm/sec)   p_kst 6.915254e-04   p_cons 1.049531e-01   p_joint 6.915254e-04

Joint ci ratio: 1.116427e-01	ci left: 6.534872e-04	ci right 7.312982e-04	k: 1231	n:1780000
Cons ci ratio: 8.580674e-03	ci left: 1.044939e-01	ci right 1.053950e-01	k: 186800	n:1780000
KS ci ratio: 1.116427e-01	ci left: 6.534872e-04	ci right 7.312982e-04	k: 1231	n:1780000
ZDHHC17   1780000 perm   1702 sec   (1046 perm/sec)   p_kst 6.915730e-04   p_cons 1.049438e-01   p_joint 6.915730e-04

Joint ci ratio: 1.115071e-01	ci left: 6.514656e-04	ci right 7.289355e-04	k: 1234	n:1790000
Cons ci ratio: 8.555716e-03	ci left: 1.045161e-01	ci right 1.054147e-01	k: 187887	n:1790000
KS ci ratio: 1.115071e-01	ci left: 6.514656e-04	ci right 7.289355e-04	k: 1234	n:1790000
ZDHHC17   1790000 perm   1719 sec   (1041 perm/sec)   p_kst 6.893855e-04   p_cons 1.049648e-01   p_joint 6.893855e-04

Joint ci ratio: 1.114171e-01	ci left: 6.489265e-04	ci right 7.260280e-04	k: 1236	n:1800000
Cons ci ratio: 8.532539e-03	ci left: 1.045037e-01	ci right 1.053998e-01	k: 188912	n:1800000
KS ci ratio: 1.114171e-01	ci left: 6.489265e-04	ci right 7.260280e-04	k: 1236	n:1800000
ZDHHC17   1800000 perm   1737 sec   (1036 perm/sec)   p_kst 6.866667e-04   p_cons 1.049511e-01   p_joint 6.866667e-04

Joint ci ratio: 1.111032e-01	ci left: 6.491010e-04	ci right 7.259918e-04	k: 1243	n:1810000
Cons ci ratio: 8.508524e-03	ci left: 1.045141e-01	ci right 1.054077e-01	k: 189978	n:1810000
KS ci ratio: 1.111032e-01	ci left: 6.491010e-04	ci right 7.259918e-04	k: 1243	n:1810000
ZDHHC17   1810000 perm   1754 sec   (1032 perm/sec)   p_kst 6.867403e-04   p_cons 1.049602e-01   p_joint 6.867403e-04

Joint ci ratio: 1.109251e-01	ci left: 6.476713e-04	ci right 7.242616e-04	k: 1247	n:1820000
Cons ci ratio: 8.485752e-03	ci left: 1.045012e-01	ci right 1.053923e-01	k: 191002	n:1820000
KS ci ratio: 1.109251e-01	ci left: 6.476713e-04	ci right 7.242616e-04	k: 1247	n:1820000
ZDHHC17   1820000 perm   1772 sec   (1027 perm/sec)   p_kst 6.851648e-04   p_cons 1.049462e-01   p_joint 6.851648e-04

Joint ci ratio: 1.107036e-01	ci left: 6.467886e-04	ci right 7.231119e-04	k: 1252	n:1830000
Cons ci ratio: 8.461537e-03	ci left: 1.045246e-01	ci right 1.054133e-01	k: 192092	n:1830000
KS ci ratio: 1.107036e-01	ci left: 6.467886e-04	ci right 7.231119e-04	k: 1252	n:1830000
ZDHHC17   1830000 perm   1789 sec   (1023 perm/sec)   p_kst 6.841530e-04   p_cons 1.049683e-01   p_joint 6.841530e-04

Joint ci ratio: 1.104395e-01	ci left: 6.464441e-04	ci right 7.225330e-04	k: 1258	n:1840000
Cons ci ratio: 8.438725e-03	ci left: 1.045211e-01	ci right 1.054074e-01	k: 193133	n:1840000
KS ci ratio: 1.104395e-01	ci left: 6.464441e-04	ci right 7.225330e-04	k: 1258	n:1840000
ZDHHC17   1840000 perm   1807 sec   (1018 perm/sec)   p_kst 6.836957e-04   p_cons 1.049636e-01   p_joint 6.836957e-04

Joint ci ratio: 1.100903e-01	ci left: 6.471549e-04	ci right 7.230709e-04	k: 1266	n:1850000
Cons ci ratio: 8.414910e-03	ci left: 1.045440e-01	ci right 1.054280e-01	k: 194223	n:1850000
KS ci ratio: 1.100903e-01	ci left: 6.471549e-04	ci right 7.230709e-04	k: 1266	n:1850000
ZDHHC17   1850000 perm   1825 sec   (1014 perm/sec)   p_kst 6.843243e-04   p_cons 1.049854e-01   p_joint 6.843243e-04

Joint ci ratio: 1.098737e-01	ci left: 6.462898e-04	ci right 7.219455e-04	k: 1271	n:1860000
Cons ci ratio: 8.391991e-03	ci left: 1.045512e-01	ci right 1.054328e-01	k: 195284	n:1860000
KS ci ratio: 1.098737e-01	ci left: 6.462898e-04	ci right 7.219455e-04	k: 1271	n:1860000
ZDHHC17   1860000 perm   1843 sec   (1009 perm/sec)   p_kst 6.833333e-04   p_cons 1.049914e-01   p_joint 6.833333e-04

Joint ci ratio: 1.096585e-01	ci left: 6.454341e-04	ci right 7.208320e-04	k: 1276	n:1870000
Cons ci ratio: 8.370235e-03	ci left: 1.045364e-01	ci right 1.054156e-01	k: 196304	n:1870000
KS ci ratio: 1.096585e-01	ci left: 6.454341e-04	ci right 7.208320e-04	k: 1276	n:1870000
ZDHHC17   1870000 perm   1860 sec   (1005 perm/sec)   p_kst 6.823529e-04   p_cons 1.049754e-01   p_joint 6.823529e-04

Joint ci ratio: 1.093591e-01	ci left: 6.456223e-04	ci right 7.208232e-04	k: 1283	n:1880000
Cons ci ratio: 8.347678e-03	ci left: 1.045436e-01	ci right 1.054204e-01	k: 197365	n:1880000
KS ci ratio: 1.093591e-01	ci left: 6.456223e-04	ci right 7.208232e-04	k: 1283	n:1880000
ZDHHC17   1880000 perm   1878 sec   (1001 perm/sec)   p_kst 6.824468e-04   p_cons 1.049814e-01   p_joint 6.824468e-04

Joint ci ratio: 1.092317e-01	ci left: 6.437502e-04	ci right 7.186400e-04	k: 1286	n:1890000
Cons ci ratio: 8.325889e-03	ci left: 1.045374e-01	ci right 1.054119e-01	k: 198401	n:1890000
KS ci ratio: 1.092317e-01	ci left: 6.437502e-04	ci right 7.186400e-04	k: 1286	n:1890000
ZDHHC17   1890000 perm   1895 sec   (997 perm/sec)   p_kst 6.804233e-04   p_cons 1.049741e-01   p_joint 6.804233e-04

Joint ci ratio: 1.091471e-01	ci left: 6.413859e-04	ci right 7.159391e-04	k: 1288	n:1900000
Cons ci ratio: 8.305038e-03	ci left: 1.045140e-01	ci right 1.053861e-01	k: 199404	n:1900000
KS ci ratio: 1.091471e-01	ci left: 6.413859e-04	ci right 7.159391e-04	k: 1288	n:1900000
ZDHHC17   1900000 perm   1913 sec   (993 perm/sec)   p_kst 6.778947e-04   p_cons 1.049495e-01   p_joint 6.778947e-04

Joint ci ratio: 1.089361e-01	ci left: 6.405743e-04	ci right 7.148799e-04	k: 1293	n:1910000
Cons ci ratio: 8.282287e-03	ci left: 1.045374e-01	ci right 1.054073e-01	k: 200496	n:1910000
KS ci ratio: 1.089361e-01	ci left: 6.405743e-04	ci right 7.148799e-04	k: 1293	n:1910000
ZDHHC17   1910000 perm   1931 sec   (989 perm/sec)   p_kst 6.769634e-04   p_cons 1.049717e-01   p_joint 6.769634e-04

Joint ci ratio: 1.086008e-01	ci left: 6.412913e-04	ci right 7.154366e-04	k: 1301	n:1920000
Cons ci ratio: 8.260043e-03	ci left: 1.045532e-01	ci right 1.054209e-01	k: 201574	n:1920000
KS ci ratio: 1.086008e-01	ci left: 6.412913e-04	ci right 7.154366e-04	k: 1301	n:1920000
ZDHHC17   1920000 perm   1949 sec   (985 perm/sec)   p_kst 6.776042e-04   p_cons 1.049865e-01   p_joint 6.776042e-04

Joint ci ratio: 1.084345e-01	ci left: 6.399848e-04	ci right 7.138584e-04	k: 1305	n:1930000
Cons ci ratio: 8.239727e-03	ci left: 1.045291e-01	ci right 1.053944e-01	k: 202575	n:1930000
KS ci ratio: 1.084345e-01	ci left: 6.399848e-04	ci right 7.138584e-04	k: 1305	n:1930000
ZDHHC17   1930000 perm   1967 sec   (981 perm/sec)   p_kst 6.761658e-04   p_cons 1.049611e-01   p_joint 6.761658e-04

Joint ci ratio: 1.081863e-01	ci left: 6.396949e-04	ci right 7.133553e-04	k: 1311	n:1940000
Cons ci ratio: 8.217936e-03	ci left: 1.045422e-01	ci right 1.054054e-01	k: 203648	n:1940000
KS ci ratio: 1.081863e-01	ci left: 6.396949e-04	ci right 7.133553e-04	k: 1311	n:1940000
ZDHHC17   1940000 perm   1986 sec   (977 perm/sec)   p_kst 6.757732e-04   p_cons 1.049732e-01   p_joint 6.757732e-04

Joint ci ratio: 1.081452e-01	ci left: 6.369133e-04	ci right 7.102238e-04	k: 1312	n:1950000
Cons ci ratio: 8.196563e-03	ci left: 1.045496e-01	ci right 1.054106e-01	k: 204710	n:1950000
KS ci ratio: 1.081452e-01	ci left: 6.369133e-04	ci right 7.102238e-04	k: 1312	n:1950000
ZDHHC17   1950000 perm   2004 sec   (973 perm/sec)   p_kst 6.728205e-04   p_cons 1.049795e-01   p_joint 6.728205e-04

Joint ci ratio: 1.079809e-01	ci left: 6.356494e-04	ci right 7.086962e-04	k: 1316	n:1960000
Cons ci ratio: 8.174490e-03	ci left: 1.045768e-01	ci right 1.054356e-01	k: 205811	n:1960000
KS ci ratio: 1.079809e-01	ci left: 6.356494e-04	ci right 7.086962e-04	k: 1316	n:1960000
ZDHHC17   1960000 perm   2022 sec   (969 perm/sec)   p_kst 6.714286e-04   p_cons 1.050056e-01   p_joint 6.714286e-04

Joint ci ratio: 1.075327e-01	ci left: 6.378560e-04	ci right 7.108329e-04	k: 1327	n:1970000
Cons ci ratio: 8.154466e-03	ci left: 1.045606e-01	ci right 1.054172e-01	k: 206827	n:1970000
KS ci ratio: 1.075327e-01	ci left: 6.378560e-04	ci right 7.108329e-04	k: 1327	n:1970000
ZDHHC17   1970000 perm   2040 sec   (966 perm/sec)   p_kst 6.736041e-04   p_cons 1.049883e-01   p_joint 6.736041e-04

Joint ci ratio: 1.072504e-01	ci left: 6.380749e-04	ci right 7.108731e-04	k: 1334	n:1980000
Cons ci ratio: 8.134261e-03	ci left: 1.045522e-01	ci right 1.054066e-01	k: 207858	n:1980000
KS ci ratio: 1.072504e-01	ci left: 6.380749e-04	ci right 7.108731e-04	k: 1334	n:1980000
ZDHHC17   1980000 perm   2059 sec   (962 perm/sec)   p_kst 6.737374e-04   p_cons 1.049788e-01   p_joint 6.737374e-04

Joint ci ratio: 1.071302e-01	ci left: 6.363356e-04	ci right 7.088488e-04	k: 1337	n:1990000
Cons ci ratio: 8.114205e-03	ci left: 1.045438e-01	ci right 1.053960e-01	k: 208889	n:1990000
KS ci ratio: 1.071302e-01	ci left: 6.363356e-04	ci right 7.088488e-04	k: 1337	n:1990000
ZDHHC17   1990000 perm   2077 sec   (958 perm/sec)   p_kst 6.718593e-04   p_cons 1.049693e-01   p_joint 6.718593e-04

Joint ci ratio: 1.069306e-01	ci left: 6.355870e-04	ci right 7.078715e-04	k: 1342	n:2000000
Cons ci ratio: 8.094017e-03	ci left: 1.045420e-01	ci right 1.053921e-01	k: 209933	n:2000000
KS ci ratio: 1.069306e-01	ci left: 6.355870e-04	ci right 7.078715e-04	k: 1342	n:2000000
ZDHHC17   2000000 perm   2096 sec   (954 perm/sec)   p_kst 6.710000e-04   p_cons 1.049665e-01   p_joint 6.710000e-04

Joint ci ratio: 1.067718e-01	ci left: 6.343617e-04	ci right 7.063930e-04	k: 1346	n:2010000
Cons ci ratio: 8.073530e-03	ci left: 1.045507e-01	ci right 1.053987e-01	k: 210998	n:2010000
KS ci ratio: 1.067718e-01	ci left: 6.343617e-04	ci right 7.063930e-04	k: 1346	n:2010000
ZDHHC17   2010000 perm   2115 sec   (950 perm/sec)   p_kst 6.696517e-04   p_cons 1.049741e-01   p_joint 6.696517e-04

Joint ci ratio: 1.064561e-01	ci left: 6.350761e-04	ci right 7.069620e-04	k: 1354	n:2020000
Cons ci ratio: 8.054556e-03	ci left: 1.045277e-01	ci right 1.053735e-01	k: 211999	n:2020000
KS ci ratio: 1.064561e-01	ci left: 6.350761e-04	ci right 7.069620e-04	k: 1354	n:2020000
ZDHHC17   2020000 perm   2135 sec   (946 perm/sec)   p_kst 6.702970e-04   p_cons 1.049500e-01   p_joint 6.702970e-04

Joint ci ratio: 1.062603e-01	ci left: 6.343452e-04	ci right 7.060079e-04	k: 1359	n:2030000
Cons ci ratio: 8.033966e-03	ci left: 1.045457e-01	ci right 1.053894e-01	k: 213083	n:2030000
KS ci ratio: 1.062603e-01	ci left: 6.343452e-04	ci right 7.060079e-04	k: 1359	n:2030000
ZDHHC17   2030000 perm   2154 sec   (942 perm/sec)   p_kst 6.694581e-04   p_cons 1.049670e-01   p_joint 6.694581e-04

Joint ci ratio: 1.060267e-01	ci left: 6.340988e-04	ci right 7.055664e-04	k: 1365	n:2040000
Cons ci ratio: 8.015812e-03	ci left: 1.045102e-01	ci right 1.053517e-01	k: 214058	n:2040000
KS ci ratio: 1.060267e-01	ci left: 6.340988e-04	ci right 7.055664e-04	k: 1365	n:2040000
ZDHHC17   2040000 perm   2173 sec   (939 perm/sec)   p_kst 6.691176e-04   p_cons 1.049304e-01   p_joint 6.691176e-04

Joint ci ratio: 1.057946e-01	ci left: 6.338549e-04	ci right 7.051289e-04	k: 1371	n:2050000
Cons ci ratio: 7.996535e-03	ci left: 1.045042e-01	ci right 1.053437e-01	k: 215093	n:2050000
KS ci ratio: 1.057946e-01	ci left: 6.338549e-04	ci right 7.051289e-04	k: 1371	n:2050000
ZDHHC17   2050000 perm   2193 sec   (935 perm/sec)   p_kst 6.687805e-04   p_cons 1.049234e-01   p_joint 6.687805e-04

Joint ci ratio: 1.054875e-01	ci left: 6.345588e-04	ci right 7.056920e-04	k: 1379	n:2060000
Cons ci ratio: 7.977127e-03	ci left: 1.045046e-01	ci right 1.053421e-01	k: 216141	n:2060000
KS ci ratio: 1.054875e-01	ci left: 6.345588e-04	ci right 7.056920e-04	k: 1379	n:2060000
ZDHHC17   2060000 perm   2212 sec   (931 perm/sec)   p_kst 6.694175e-04   p_cons 1.049228e-01   p_joint 6.694175e-04

Joint ci ratio: 1.051451e-01	ci left: 6.357266e-04	ci right 7.067451e-04	k: 1388	n:2070000
Cons ci ratio: 7.958066e-03	ci left: 1.045002e-01	ci right 1.053356e-01	k: 217179	n:2070000
KS ci ratio: 1.051451e-01	ci left: 6.357266e-04	ci right 7.067451e-04	k: 1388	n:2070000
ZDHHC17   2070000 perm   2232 sec   (928 perm/sec)   p_kst 6.705314e-04   p_cons 1.049174e-01   p_joint 6.705314e-04

Joint ci ratio: 1.049941e-01	ci left: 6.345428e-04	ci right 7.053210e-04	k: 1392	n:2080000
Cons ci ratio: 7.938672e-03	ci left: 1.045069e-01	ci right 1.053403e-01	k: 218240	n:2080000
KS ci ratio: 1.049941e-01	ci left: 6.345428e-04	ci right 7.053210e-04	k: 1392	n:2080000
ZDHHC17   2080000 perm   2251 sec   (924 perm/sec)   p_kst 6.692308e-04   p_cons 1.049231e-01   p_joint 6.692308e-04

Joint ci ratio: 1.045819e-01	ci left: 6.366320e-04	ci right 7.073472e-04	k: 1403	n:2090000
Cons ci ratio: 7.919097e-03	ci left: 1.045212e-01	ci right 1.053526e-01	k: 219317	n:2090000
KS ci ratio: 1.045819e-01	ci left: 6.366320e-04	ci right 7.073472e-04	k: 1403	n:2090000
ZDHHC17   2090000 perm   2272 sec   (920 perm/sec)   p_kst 6.712919e-04   p_cons 1.049364e-01   p_joint 6.712919e-04

Joint ci ratio: 1.042852e-01	ci left: 6.373104e-04	ci right 7.078879e-04	k: 1411	n:2100000
Cons ci ratio: 7.900808e-03	ci left: 1.045082e-01	ci right 1.053376e-01	k: 220337	n:2100000
KS ci ratio: 1.042852e-01	ci left: 6.373104e-04	ci right 7.078879e-04	k: 1411	n:2100000
ZDHHC17   2100000 perm   2291 sec   (916 perm/sec)   p_kst 6.719048e-04   p_cons 1.049224e-01   p_joint 6.719048e-04

Joint ci ratio: 1.039910e-01	ci left: 6.379827e-04	ci right 7.084231e-04	k: 1419	n:2110000
Cons ci ratio: 7.881571e-03	ci left: 1.045209e-01	ci right 1.053484e-01	k: 221411	n:2110000
KS ci ratio: 1.039910e-01	ci left: 6.379827e-04	ci right 7.084231e-04	k: 1419	n:2110000
ZDHHC17   2110000 perm   2312 sec   (913 perm/sec)   p_kst 6.725118e-04   p_cons 1.049341e-01   p_joint 6.725118e-04

Joint ci ratio: 1.038814e-01	ci left: 6.363516e-04	ci right 7.065334e-04	k: 1422	n:2120000
Cons ci ratio: 7.862434e-03	ci left: 1.045344e-01	ci right 1.053600e-01	k: 222487	n:2120000
KS ci ratio: 1.038814e-01	ci left: 6.363516e-04	ci right 7.065334e-04	k: 1422	n:2120000
ZDHHC17   2120000 perm   2332 sec   (909 perm/sec)   p_kst 6.707547e-04   p_cons 1.049467e-01   p_joint 6.707547e-04

Joint ci ratio: 1.036268e-01	ci left: 6.365652e-04	ci right 7.065880e-04	k: 1429	n:2130000
Cons ci ratio: 7.845201e-03	ci left: 1.045057e-01	ci right 1.053292e-01	k: 223473	n:2130000
KS ci ratio: 1.036268e-01	ci left: 6.365652e-04	ci right 7.065880e-04	k: 1429	n:2130000
ZDHHC17   2130000 perm   2352 sec   (905 perm/sec)   p_kst 6.708920e-04   p_cons 1.049169e-01   p_joint 6.708920e-04

Joint ci ratio: 1.034822e-01	ci left: 6.354113e-04	ci right 7.052037e-04	k: 1433	n:2140000
Cons ci ratio: 7.825976e-03	ci left: 1.045275e-01	ci right 1.053492e-01	k: 224567	n:2140000
KS ci ratio: 1.034822e-01	ci left: 6.354113e-04	ci right 7.052037e-04	k: 1433	n:2140000
ZDHHC17   2140000 perm   2373 sec   (902 perm/sec)   p_kst 6.696262e-04   p_cons 1.049379e-01   p_joint 6.696262e-04

Joint ci ratio: 1.031948e-01	ci left: 6.360807e-04	ci right 7.057408e-04	k: 1441	n:2150000
Cons ci ratio: 7.808362e-03	ci left: 1.045139e-01	ci right 1.053337e-01	k: 225585	n:2150000
KS ci ratio: 1.031948e-01	ci left: 6.360807e-04	ci right 7.057408e-04	k: 1441	n:2150000
ZDHHC17   2150000 perm   2393 sec   (899 perm/sec)   p_kst 6.702326e-04   p_cons 1.049233e-01   p_joint 6.702326e-04

Joint ci ratio: 1.026973e-01	ci left: 6.394505e-04	ci right 7.091217e-04	k: 1455	n:2160000
Cons ci ratio: 7.790847e-03	ci left: 1.045009e-01	ci right 1.053187e-01	k: 226604	n:2160000
KS ci ratio: 1.026973e-01	ci left: 6.394505e-04	ci right 7.091217e-04	k: 1455	n:2160000
ZDHHC17   2160000 perm   2414 sec   (895 perm/sec)   p_kst 6.736111e-04   p_cons 1.049093e-01   p_joint 6.736111e-04

Joint ci ratio: 1.024863e-01	ci left: 6.391978e-04	ci right 7.086897e-04	k: 1461	n:2170000
Cons ci ratio: 7.773182e-03	ci left: 1.044944e-01	ci right 1.053103e-01	k: 227637	n:2170000
KS ci ratio: 1.024863e-01	ci left: 6.391978e-04	ci right 7.086897e-04	k: 1461	n:2170000
ZDHHC17   2170000 perm   2434 sec   (891 perm/sec)   p_kst 6.732719e-04   p_cons 1.049018e-01   p_joint 6.732719e-04

Joint ci ratio: 1.022767e-01	ci left: 6.389475e-04	ci right 7.082616e-04	k: 1467	n:2180000
Cons ci ratio: 7.755447e-03	ci left: 1.044926e-01	ci right 1.053066e-01	k: 228680	n:2180000
KS ci ratio: 1.022767e-01	ci left: 6.389475e-04	ci right 7.082616e-04	k: 1467	n:2180000
ZDHHC17   2180000 perm   2455 sec   (888 perm/sec)   p_kst 6.729358e-04   p_cons 1.048991e-01   p_joint 6.729358e-04

Joint ci ratio: 1.019646e-01	ci left: 6.400346e-04	ci right 7.092420e-04	k: 1476	n:2190000
Cons ci ratio: 7.736535e-03	ci left: 1.045223e-01	ci right 1.053345e-01	k: 229792	n:2190000
KS ci ratio: 1.019646e-01	ci left: 6.400346e-04	ci right 7.092420e-04	k: 1476	n:2190000
ZDHHC17   2190000 perm   2475 sec   (885 perm/sec)   p_kst 6.739726e-04   p_cons 1.049279e-01   p_joint 6.739726e-04

Joint ci ratio: 1.017924e-01	ci left: 6.393401e-04	ci right 7.083489e-04	k: 1481	n:2200000
Cons ci ratio: 7.719049e-03	ci left: 1.045203e-01	ci right 1.053307e-01	k: 230835	n:2200000
KS ci ratio: 1.017924e-01	ci left: 6.393401e-04	ci right 7.083489e-04	k: 1481	n:2200000
ZDHHC17   2200000 perm   2496 sec   (881 perm/sec)   p_kst 6.731818e-04   p_cons 1.049250e-01   p_joint 6.731818e-04

Joint ci ratio: 1.016212e-01	ci left: 6.386521e-04	ci right 7.074636e-04	k: 1486	n:2210000
Cons ci ratio: 7.702443e-03	ci left: 1.044999e-01	ci right 1.053084e-01	k: 231837	n:2210000
KS ci ratio: 1.016212e-01	ci left: 6.386521e-04	ci right 7.074636e-04	k: 1486	n:2210000
ZDHHC17   2210000 perm   2517 sec   (878 perm/sec)   p_kst 6.723982e-04   p_cons 1.049036e-01   p_joint 6.723982e-04

Joint ci ratio: 1.015530e-01	ci left: 6.366532e-04	ci right 7.052007e-04	k: 1488	n:2220000
Cons ci ratio: 7.685629e-03	ci left: 1.044873e-01	ci right 1.052939e-01	k: 232856	n:2220000
KS ci ratio: 1.015530e-01	ci left: 6.366532e-04	ci right 7.052007e-04	k: 1488	n:2220000
ZDHHC17   2220000 perm   2538 sec   (875 perm/sec)   p_kst 6.702703e-04   p_cons 1.048901e-01   p_joint 6.702703e-04

Joint ci ratio: 1.012813e-01	ci left: 6.372947e-04	ci right 7.057167e-04	k: 1496	n:2230000
Cons ci ratio: 7.667680e-03	ci left: 1.045053e-01	ci right 1.053101e-01	k: 233943	n:2230000
KS ci ratio: 1.012813e-01	ci left: 6.372947e-04	ci right 7.057167e-04	k: 1496	n:2230000
ZDHHC17   2230000 perm   2559 sec   (872 perm/sec)   p_kst 6.708520e-04   p_cons 1.049072e-01   p_joint 6.708520e-04

Joint ci ratio: 1.009446e-01	ci left: 6.388011e-04	ci right 7.071433e-04	k: 1506	n:2240000
Cons ci ratio: 7.650729e-03	ci left: 1.045017e-01	ci right 1.053047e-01	k: 234982	n:2240000
KS ci ratio: 1.009446e-01	ci left: 6.388011e-04	ci right 7.071433e-04	k: 1506	n:2240000
ZDHHC17   2240000 perm   2580 sec   (868 perm/sec)   p_kst 6.723214e-04   p_cons 1.049027e-01   p_joint 6.723214e-04

Joint ci ratio: 1.007110e-01	ci left: 6.389946e-04	ci right 7.071900e-04	k: 1513	n:2250000
Cons ci ratio: 7.633961e-03	ci left: 1.044963e-01	ci right 1.052976e-01	k: 236017	n:2250000
KS ci ratio: 1.007110e-01	ci left: 6.389946e-04	ci right 7.071900e-04	k: 1513	n:2250000
ZDHHC17   2250000 perm   2601 sec   (865 perm/sec)   p_kst 6.724444e-04   p_cons 1.048964e-01   p_joint 6.724444e-04

Joint ci ratio: 1.005451e-01	ci left: 6.383239e-04	ci right 7.063289e-04	k: 1518	n:2260000
Cons ci ratio: 7.617735e-03	ci left: 1.044805e-01	ci right 1.052798e-01	k: 237028	n:2260000
KS ci ratio: 1.005451e-01	ci left: 6.383239e-04	ci right 7.063289e-04	k: 1518	n:2260000
ZDHHC17   2260000 perm   2623 sec   (862 perm/sec)   p_kst 6.716814e-04   p_cons 1.048796e-01   p_joint 6.716814e-04

Joint ci ratio: 1.002814e-01	ci left: 6.389477e-04	ci right 7.068300e-04	k: 1526	n:2270000
Cons ci ratio: 7.600452e-03	ci left: 1.044933e-01	ci right 1.052910e-01	k: 238104	n:2270000
KS ci ratio: 1.002814e-01	ci left: 6.389477e-04	ci right 7.068300e-04	k: 1526	n:2270000
ZDHHC17   2270000 perm   2644 sec   (859 perm/sec)   p_kst 6.722467e-04   p_cons 1.048916e-01   p_joint 6.722467e-04

Joint ci ratio: 9.998711e-02	ci left: 6.399938e-04	ci right 7.077761e-04	k: 1535	n:2280000
Cons ci ratio: 7.582968e-03	ci left: 1.045139e-01	ci right 1.053099e-01	k: 239198	n:2280000
KS ci ratio: 9.998711e-02	ci left: 6.399938e-04	ci right 7.077761e-04	k: 1535	n:2280000
ZDHHC17   2280000 perm   2665 sec   (855 perm/sec)   p_kst 6.732456e-04   p_cons 1.049114e-01   p_joint 6.732456e-04

Outputting figure to mutsig2_images.part000000000193/ZDHHC17.3_1967_2280000_0.00067325_0.10491_0.00067325.png
                gene_name: ZDHHC17
               theta_stop: 0.100 
                    nperm: 2280000 
                     p_ks: 0.00067 
        ci_ks_bounds_left: 0.00064 
       ci_ks_bounds_right: 0.00071 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.00067 
     ci_joint_bounds_left: 0.00064 
    ci_joint_bounds_right: 0.00071 

Current progress: 67 percent done.
ZDHHC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
ZDHHC22   10000 perm   1 sec   (6763 perm/sec)   p_kst 4.576000e-01   p_cons 7.009000e-01   p_joint 6.381000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC22.3_800_10000_0.4576_0.7009_0.6381.png
                gene_name: ZDHHC22
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 69 percent done.
ZDHHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
ZDHHC3   10000 perm   2 sec   (6368 perm/sec)   p_kst 5.410000e-02   p_cons 7.070000e-02   p_joint 6.940000e-02

Joint ci ratio: 1.308419e-01	ci left: 4.013335e-02	ci right 4.580049e-02	k: 858	n:20000
Cons ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
ZDHHC3   20000 perm   4 sec   (5567 perm/sec)   p_kst 5.360000e-02   p_cons 7.135000e-02   p_joint 4.290000e-02

Joint ci ratio: 7.764855e-02	ci left: 7.525161e-02	ci right 8.136369e-02	k: 2348	n:30000
Cons ci ratio: 8.143365e-02	ci left: 6.877282e-02	ci right 7.464378e-02	k: 2150	n:30000
KS ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
ZDHHC3   30000 perm   6 sec   (5269 perm/sec)   p_kst 5.286667e-02   p_cons 7.166667e-02   p_joint 7.826667e-02

Outputting figure to mutsig2_images.part000000000193/ZDHHC3.3_1265_30000_0.052867_0.071667_0.078267.png
                gene_name: ZDHHC3
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 71 percent done.
ZBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
ZBTB2   10000 perm   2 sec   (6355 perm/sec)   p_kst 6.748000e-01   p_cons 2.060000e-01   p_joint 5.441000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB2.2_1553_10000_0.6748_0.206_0.5441.png
                gene_name: ZBTB2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 73 percent done.
ZBTB24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
Cons ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
KS ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
ZBTB24   10000 perm   2 sec   (5959 perm/sec)   p_kst 1.483000e-01   p_cons 6.530000e-02   p_joint 2.740000e-02

Joint ci ratio: 1.478567e-01	ci left: 3.143485e-02	ci right 3.650181e-02	k: 678	n:20000
Cons ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
KS ci ratio: 6.589195e-02	ci left: 1.453734e-01	ci right 1.553285e-01	k: 3006	n:20000
ZBTB24   20000 perm   4 sec   (5184 perm/sec)   p_kst 1.503000e-01   p_cons 6.880000e-02   p_joint 3.390000e-02

Joint ci ratio: 6.831375e-02	ci left: 9.551137e-02	ci right 1.022999e-01	k: 2966	n:30000
Cons ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
KS ci ratio: 5.352528e-02	ci left: 1.475919e-01	ci right 1.557423e-01	k: 4549	n:30000
ZBTB24   30000 perm   6 sec   (4954 perm/sec)   p_kst 1.516333e-01   p_cons 6.726667e-02   p_joint 9.886667e-02

Outputting figure to mutsig2_images.part000000000193/ZBTB24.2_2168_30000_0.15163_0.067267_0.098867.png
                gene_name: ZBTB24
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 75 percent done.
ZBTB26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
KS ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
ZBTB26   10000 perm   2 sec   (6602 perm/sec)   p_kst 7.250000e-02   p_cons 1.598000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 6.282217e-02	ci left: 1.578065e-01	ci right 1.680917e-01	k: 3258	n:20000
KS ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
ZBTB26   20000 perm   3 sec   (5749 perm/sec)   p_kst 7.220000e-02   p_cons 1.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB26.2_1330_20000_0.0722_0.1629_1.png
                gene_name: ZBTB26
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ZBTB33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
Cons ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
KS ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
ZBTB33   10000 perm   2 sec   (6048 perm/sec)   p_kst 8.258000e-01   p_cons 1.595000e-01   p_joint 7.931000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB33.2_2023_10000_0.8258_0.1595_0.7931.png
                gene_name: ZBTB33
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 78 percent done.
ZBTB34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
KS ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
ZBTB34   10000 perm   1 sec   (6697 perm/sec)   p_kst 6.670000e-01   p_cons 5.910000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB34.2_1507_10000_0.667_0.591_0.9245.png
                gene_name: ZBTB34
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 80 percent done.
ZBTB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
Cons ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
KS ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
ZBTB4   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.487000e-01   p_cons 1.298000e-01   p_joint 3.741000e-01

Joint ci ratio: 5.597046e-02	ci left: 1.914082e-01	ci right 2.024800e-01	k: 3938	n:20000
Cons ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
KS ci ratio: 1.169276e-02	ci left: 8.439114e-01	ci right 8.538869e-01	k: 16979	n:20000
ZBTB4   20000 perm   4 sec   (5084 perm/sec)   p_kst 8.489500e-01   p_cons 1.299500e-01   p_joint 1.969000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB4.2_3050_20000_0.84895_0.12995_0.1969.png
                gene_name: ZBTB4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 82 percent done.
ZBTB40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
Cons ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
KS ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
ZBTB40   10000 perm   2 sec   (5045 perm/sec)   p_kst 6.660000e-01   p_cons 5.385000e-01   p_joint 9.100000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB40.2_3788_10000_0.666_0.5385_0.91.png
                gene_name: ZBTB40
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 84 percent done.
ZBTB46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
Cons ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
KS ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
ZBTB46   10000 perm   2 sec   (6548 perm/sec)   p_kst 2.672000e-01   p_cons 2.750000e-02   p_joint 2.740000e-02

Joint ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
Cons ci ratio: 1.621233e-01	ci left: 2.609357e-02	ci right 3.074488e-02	k: 567	n:20000
KS ci ratio: 4.554256e-02	ci left: 2.641041e-01	ci right 2.764627e-01	k: 5405	n:20000
ZBTB46   20000 perm   4 sec   (5575 perm/sec)   p_kst 2.702500e-01   p_cons 2.835000e-02   p_joint 6.720000e-02

Joint ci ratio: 1.034988e-01	ci left: 4.326677e-02	ci right 4.802173e-02	k: 1368	n:30000
Cons ci ratio: 1.313464e-01	ci left: 2.693656e-02	ci right 3.075541e-02	k: 864	n:30000
KS ci ratio: 3.708826e-02	ci left: 2.662743e-01	ci right 2.763700e-01	k: 8139	n:30000
ZBTB46   30000 perm   6 sec   (5239 perm/sec)   p_kst 2.713000e-01   p_cons 2.880000e-02   p_joint 4.560000e-02

Joint ci ratio: 9.058164e-02	ci left: 4.269554e-02	ci right 4.677089e-02	k: 1788	n:40000
Cons ci ratio: 1.129622e-01	ci left: 2.757178e-02	ci right 3.089703e-02	k: 1168	n:40000
KS ci ratio: 3.227514e-02	ci left: 2.650567e-01	ci right 2.737768e-01	k: 10776	n:40000
ZBTB46   40000 perm   8 sec   (5051 perm/sec)   p_kst 2.694000e-01   p_cons 2.920000e-02   p_joint 4.470000e-02

Joint ci ratio: 7.988946e-02	ci left: 4.410174e-02	ci right 4.779120e-02	k: 2296	n:50000
Cons ci ratio: 1.004102e-01	ci left: 2.809280e-02	ci right 3.108215e-02	k: 1478	n:50000
KS ci ratio: 2.883153e-02	ci left: 2.660125e-01	ci right 2.738142e-01	k: 13495	n:50000
ZBTB46   50000 perm   10 sec   (4849 perm/sec)   p_kst 2.699000e-01   p_cons 2.956000e-02   p_joint 4.592000e-02

Joint ci ratio: 9.423134e-02	ci left: 2.671079e-02	ci right 2.936846e-02	k: 1681	n:60000
Cons ci ratio: 9.123350e-02	ci left: 2.848650e-02	ci right 3.122589e-02	k: 1790	n:60000
KS ci ratio: 2.633529e-02	ci left: 2.661186e-01	ci right 2.732371e-01	k: 16180	n:60000
ZBTB46   60000 perm   13 sec   (4749 perm/sec)   p_kst 2.696667e-01   p_cons 2.983333e-02   p_joint 2.801667e-02

Outputting figure to mutsig2_images.part000000000193/ZBTB46.2_1786_60000_0.26967_0.029833_0.028017.png
                gene_name: ZBTB46
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 85 percent done.
ZBTB49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
Cons ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
KS ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
ZBTB49   10000 perm   2 sec   (6088 perm/sec)   p_kst 7.620000e-02   p_cons 4.906000e-01   p_joint 3.791000e-01

Joint ci ratio: 5.207801e-02	ci left: 2.149683e-01	ci right 2.265130e-01	k: 4414	n:20000
Cons ci ratio: 2.948261e-02	ci left: 4.622136e-01	ci right 4.760954e-01	k: 9383	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
ZBTB49   20000 perm   4 sec   (5346 perm/sec)   p_kst 7.190000e-02   p_cons 4.691500e-01   p_joint 2.207000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB49.2_2326_20000_0.0719_0.46915_0.2207.png
                gene_name: ZBTB49
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 87 percent done.
ZBTB8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
KS ci ratio: 3.102546e-02	ci left: 6.051797e-01	ci right 6.243534e-01	k: 6148	n:10000
ZBTB8A   10000 perm   2 sec   (6485 perm/sec)   p_kst 6.148000e-01   p_cons 4.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB8A.2_1338_10000_0.6148_0.4432_1.png
                gene_name: ZBTB8A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ZBTB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
Cons ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
KS ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
ZBTB9   10000 perm   1 sec   (6835 perm/sec)   p_kst 9.100000e-02   p_cons 9.053000e-01   p_joint 4.376000e-01

Joint ci ratio: 9.731065e-03	ci left: 8.858870e-01	ci right 8.945992e-01	k: 17806	n:20000
Cons ci ratio: 9.078381e-03	ci left: 8.989673e-01	ci right 9.072150e-01	k: 18063	n:20000
KS ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
ZBTB9   20000 perm   3 sec   (5922 perm/sec)   p_kst 9.145000e-02   p_cons 9.031500e-01   p_joint 8.903000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB9.2_1426_20000_0.09145_0.90315_0.8903.png
                gene_name: ZBTB9
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.89 

Current progress: 91 percent done.
ZCCHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
Cons ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
KS ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
ZCCHC14   10000 perm   2 sec   (5552 perm/sec)   p_kst 8.774000e-01   p_cons 2.724000e-01   p_joint 7.782000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC14.2_2902_10000_0.8774_0.2724_0.7782.png
                gene_name: ZCCHC14
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 93 percent done.
ZCCHC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
KS ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
ZCCHC9   10000 perm   2 sec   (6608 perm/sec)   p_kst 2.346000e-01   p_cons 8.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC9.2_836_10000_0.2346_0.8468_1.png
                gene_name: ZCCHC9
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
ZCWPW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
Cons ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
KS ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
ZCWPW1   10000 perm   2 sec   (6007 perm/sec)   p_kst 5.854000e-01   p_cons 8.051000e-01   p_joint 9.578000e-01

Outputting figure to mutsig2_images.part000000000193/ZCWPW1.2_2011_10000_0.5854_0.8051_0.9578.png
                gene_name: ZCWPW1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 96 percent done.
ZDHHC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
KS ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
ZDHHC19   10000 perm   1 sec   (6822 perm/sec)   p_kst 4.819000e-01   p_cons 5.834000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZDHHC19.2_958_10000_0.4819_0.5834_1.png
                gene_name: ZDHHC19
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZDHHC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
ZDHHC23   10000 perm   2 sec   (6556 perm/sec)   p_kst 8.069000e-01   p_cons 9.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZDHHC23.2_1250_10000_0.8069_0.9468_1.png
                gene_name: ZDHHC23
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000193
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 193 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 4422707: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000194> was used as the working directory.
Started at Wed Oct 24 18:11:33 2012
Results reported at Wed Oct 24 20:39:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000194.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000194.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 194  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000194.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8939.46 sec.
    Max Memory :      9526 MB
    Max Swap   :     11938 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
194
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 194
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 194: processing genes 17462 - 17551
Calculating significance of each gene.
Using projection method.
17462	ZDHHC6	4.259329e-01
17463	ZDHHC7	8.813411e-01
17464	ZDHHC8	8.825987e-01
17465	ZDHHC9	1
17466	ZEB1	9.880151e-01
17467	ZEB2	8.720453e-01
17468	ZER1	9.728381e-01
17469	ZFAND1	2.948396e-02
17470	ZFAND2A	1
17471	ZFAND2B	7.454685e-01
17472	ZFAND3	1
17473	ZFAND5	1
17474	ZFAND6	7.077026e-01
17475	ZFAT	9.516246e-01
17476	ZFC3H1	9.998258e-01
17477	ZFHX3	1
17478	ZFHX4	9.885768e-01
17479	ZFP1	7.964214e-01
17480	ZFP106	9.999835e-01
17481	ZFP112	8.287333e-01
17482	ZFP14	2.680309e-02
17483	ZFP161	6.698478e-02
17484	ZFP2	6.830168e-01
17485	ZFP28	1
17486	ZFP3	6.524004e-01
17487	ZFP30	2.756283e-01
17488	ZFP36	6.732078e-01
17489	ZFP36L1	4.834059e-01
17490	ZFP36L2	1
17491	ZFP37	5.439295e-01
17492	ZFP41	3.562288e-01
17493	ZFP42	1.139187e-01
17494	ZFP57	1.569035e-01
17495	ZFP64	9.355661e-01
In gene ZFP82 the following bins exceed PROBCAP:
    LUAD-17-Z037-TP	categ 6	N = 1615    n = 1	mu =   6.02e-07
17496	ZFP82	6.025505e-01
17497	ZFP90	9.542219e-01
17498	ZFP91	6.774527e-02
17499	ZFPL1	8.696301e-01
17500	ZFPM1	1
17501	ZFPM2	1
17502	ZFR	9.977716e-01
17503	ZFR2	8.976688e-01
17504	ZFX	9.665627e-01
17505	ZFY	9.678338e-01
17506	ZFYVE1	1
17507	ZFYVE16	9.985890e-01
17508	ZFYVE19	7.074630e-01
17509	ZFYVE20	9.666911e-01
17510	ZFYVE21	6.951488e-01
17511	ZFYVE26	9.516185e-01
17512	ZFYVE27	8.664495e-01
17513	ZFYVE28	4.584601e-01
17514	ZFYVE9	8.914314e-01
17515	ZG16B	5.100296e-01
17516	ZGLP1	1
17517	ZGPAT	4.994128e-01
17518	ZHX1	5.935188e-01
17519	ZHX2	9.587608e-01
In gene ZHX3 the following bins exceed PROBCAP:
    LUAD-17-Z047-TP	categ 6	N = 2879    n = 1	mu =   4.02e-07
17520	ZHX3	7.854550e-01
17521	ZIC1	3.220657e-02
17522	ZIC2	6.187896e-03
17523	ZIC3	1
17524	ZIC4	6.039765e-06
17525	ZIC5	4.020987e-01
17526	ZIK1	1.046774e-01
17527	ZIM2	4.287754e-02
17528	ZIM3	8.715756e-01
17529	ZKSCAN1	5.736763e-01
17530	ZKSCAN2	4.521367e-01
17531	ZKSCAN3	1
17532	ZKSCAN4	1
17533	ZKSCAN5	8.525294e-01
17534	ZMAT1	2.934824e-01
17535	ZMAT2	1
17536	ZMAT3	7.540820e-01
17537	ZMAT4	1.100227e-01
17538	ZMAT5	3.372718e-01
17539	ZMIZ1	8.857220e-01
17540	ZMIZ2	8.901017e-01
17541	ZMPSTE24	7.256144e-01
17542	ZMYM1	9.537946e-01
17543	ZMYM2	9.793480e-01
17544	ZMYM3	8.993789e-01
17545	ZMYM4	9.727679e-01
17546	ZMYM5	6.094794e-01
In gene ZMYM6 the following bins exceed PROBCAP:
    LUAD-75-6205-TP	categ 6	N = 2901    n = 1	mu =   1.67e-07
17547	ZMYM6	3.537663e-01
17548	ZMYND10	1
17549	ZMYND11	9.555337e-01
17550	ZMYND12	9.036190e-01
17551	ZMYND15	1
Done

Running MutSig 2:
Scatter job 194: processing genes 17462 - 17551
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZFHX4
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
Cons ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
ZFHX4   10000 perm   5 sec   (2006 perm/sec)   p_kst 4.101000e-01   p_cons 5.100000e-03   p_joint 1.580000e-02

Joint ci ratio: 2.967330e-01	ci left: 7.367140e-03	ci right 9.978720e-03	k: 172	n:20000
Cons ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
KS ci ratio: 3.261371e-02	ci left: 4.124984e-01	ci right 4.262251e-01	k: 8387	n:20000
ZFHX4   20000 perm   12 sec   (1652 perm/sec)   p_kst 4.193500e-01   p_cons 4.350000e-03   p_joint 8.600000e-03

Joint ci ratio: 1.714134e-01	ci left: 1.566320e-02	ci right 1.863136e-02	k: 513	n:30000
Cons ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
KS ci ratio: 2.631782e-02	ci left: 4.194967e-01	ci right 4.307178e-01	k: 12753	n:30000
ZFHX4   30000 perm   18 sec   (1714 perm/sec)   p_kst 4.251000e-01   p_cons 3.900000e-03   p_joint 1.710000e-02

Joint ci ratio: 1.697905e-01	ci left: 1.203263e-02	ci right 1.428886e-02	k: 525	n:40000
Cons ci ratio: 3.122316e-01	ci left: 3.312947e-03	ci right 4.560770e-03	k: 156	n:40000
KS ci ratio: 2.284595e-02	ci left: 4.191003e-01	ci right 4.288108e-01	k: 16958	n:40000
ZFHX4   40000 perm   23 sec   (1740 perm/sec)   p_kst 4.239500e-01   p_cons 3.900000e-03   p_joint 1.312500e-02

Joint ci ratio: 1.297044e-01	ci left: 1.677525e-02	ci right 1.912119e-02	k: 896	n:50000
Cons ci ratio: 2.699344e-01	ci left: 3.633436e-03	ci right 4.785298e-03	k: 209	n:50000
KS ci ratio: 2.055644e-02	ci left: 4.167071e-01	ci right 4.253821e-01	k: 21052	n:50000
ZFHX4   50000 perm   29 sec   (1748 perm/sec)   p_kst 4.210400e-01   p_cons 4.180000e-03   p_joint 1.792000e-02

Joint ci ratio: 1.327867e-01	ci left: 1.336524e-02	ci right 1.528216e-02	k: 858	n:60000
Cons ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
KS ci ratio: 1.874972e-02	ci left: 4.174945e-01	ci right 4.254131e-01	k: 25287	n:60000
ZFHX4   60000 perm   34 sec   (1753 perm/sec)   p_kst 4.214500e-01   p_cons 4.300000e-03   p_joint 1.430000e-02

Joint ci ratio: 1.273378e-01	ci left: 1.250596e-02	ci right 1.422045e-02	k: 934	n:70000
Cons ci ratio: 2.262132e-01	ci left: 3.788330e-03	ci right 4.767749e-03	k: 298	n:70000
KS ci ratio: 1.731604e-02	ci left: 4.189939e-01	ci right 4.263268e-01	k: 29586	n:70000
ZFHX4   70000 perm   40 sec   (1755 perm/sec)   p_kst 4.226571e-01   p_cons 4.257143e-03   p_joint 1.334286e-02

Joint ci ratio: 1.216526e-01	ci left: 1.203250e-02	ci right 1.360312e-02	k: 1024	n:80000
Cons ci ratio: 2.108960e-01	ci left: 3.846541e-03	ci right 4.764978e-03	k: 343	n:80000
KS ci ratio: 1.622787e-02	ci left: 4.183246e-01	ci right 4.251811e-01	k: 33740	n:80000
ZFHX4   80000 perm   46 sec   (1753 perm/sec)   p_kst 4.217500e-01   p_cons 4.287500e-03   p_joint 1.280000e-02

Joint ci ratio: 1.204979e-01	ci left: 1.092144e-02	ci right 1.233252e-02	k: 1045	n:90000
Cons ci ratio: 1.980653e-01	ci left: 3.904121e-03	ci right 4.772748e-03	k: 389	n:90000
KS ci ratio: 1.528536e-02	ci left: 4.189813e-01	ci right 4.254460e-01	k: 37999	n:90000
ZFHX4   90000 perm   51 sec   (1750 perm/sec)   p_kst 4.222111e-01   p_cons 4.322222e-03   p_joint 1.161111e-02

Joint ci ratio: 1.205106e-01	ci left: 9.838664e-03	ci right 1.110997e-02	k: 1046	n:100000
Cons ci ratio: 1.886314e-01	ci left: 3.894352e-03	ci right 4.714809e-03	k: 429	n:100000
KS ci ratio: 1.480751e-02	ci left: 4.089869e-01	ci right 4.150982e-01	k: 41204	n:100000
ZFHX4   100000 perm   57 sec   (1745 perm/sec)   p_kst 4.120400e-01   p_cons 4.290000e-03   p_joint 1.046000e-02

Joint ci ratio: 1.246602e-01	ci left: 8.353417e-03	ci right 9.472706e-03	k: 979	n:110000
Cons ci ratio: 1.814002e-01	ci left: 3.843759e-03	ci right 4.619102e-03	k: 464	n:110000
KS ci ratio: 1.409896e-02	ci left: 4.097975e-01	ci right 4.156253e-01	k: 45398	n:110000
ZFHX4   110000 perm   63 sec   (1739 perm/sec)   p_kst 4.127091e-01   p_cons 4.218182e-03   p_joint 8.900000e-03

Joint ci ratio: 1.228254e-01	ci left: 7.899445e-03	ci right 8.941188e-03	k: 1009	n:120000
Cons ci ratio: 1.728705e-01	ci left: 3.897764e-03	ci right 4.643173e-03	k: 511	n:120000
KS ci ratio: 1.349041e-02	ci left: 4.102205e-01	ci right 4.158004e-01	k: 49561	n:120000
ZFHX4   120000 perm   69 sec   (1732 perm/sec)   p_kst 4.130083e-01   p_cons 4.258333e-03   p_joint 8.408333e-03

Joint ci ratio: 1.106978e-01	ci left: 9.024694e-03	ci right 1.008966e-02	k: 1241	n:130000
Cons ci ratio: 1.654409e-01	ci left: 3.944181e-03	ci right 4.662822e-03	k: 558	n:130000
KS ci ratio: 1.294764e-02	ci left: 4.108365e-01	ci right 4.161981e-01	k: 53757	n:130000
ZFHX4   130000 perm   75 sec   (1725 perm/sec)   p_kst 4.135154e-01   p_cons 4.292308e-03   p_joint 9.546154e-03

Joint ci ratio: 1.066928e-01	ci left: 9.040202e-03	ci right 1.006598e-02	k: 1336	n:140000
Cons ci ratio: 1.592900e-01	ci left: 3.963975e-03	ci right 4.656802e-03	k: 602	n:140000
KS ci ratio: 1.247927e-02	ci left: 4.108330e-01	ci right 4.159992e-01	k: 57878	n:140000
ZFHX4   140000 perm   82 sec   (1718 perm/sec)   p_kst 4.134143e-01   p_cons 4.300000e-03   p_joint 9.542857e-03

Joint ci ratio: 9.447717e-02	ci left: 1.081029e-02	ci right 1.188872e-02	k: 1701	n:150000
Cons ci ratio: 1.533027e-01	ci left: 4.007204e-03	ci right 4.678844e-03	k: 650	n:150000
KS ci ratio: 1.205732e-02	ci left: 4.108730e-01	ci right 4.158637e-01	k: 62005	n:150000
ZFHX4   150000 perm   88 sec   (1710 perm/sec)   p_kst 4.133667e-01   p_cons 4.333333e-03   p_joint 1.134000e-02

Joint ci ratio: 8.806776e-02	ci left: 1.169228e-02	ci right 1.277550e-02	k: 1956	n:160000
Cons ci ratio: 1.482632e-01	ci left: 4.027397e-03	ci right 4.678264e-03	k: 695	n:160000
KS ci ratio: 1.167110e-02	ci left: 4.110917e-01	ci right 4.159239e-01	k: 66161	n:160000
ZFHX4   160000 perm   94 sec   (1701 perm/sec)   p_kst 4.135063e-01   p_cons 4.343750e-03   p_joint 1.222500e-02

Joint ci ratio: 8.639639e-02	ci left: 1.144750e-02	ci right 1.248689e-02	k: 2033	n:170000
Cons ci ratio: 1.438853e-01	ci left: 4.034190e-03	ci right 4.665250e-03	k: 738	n:170000
KS ci ratio: 1.131619e-02	ci left: 4.114397e-01	ci right 4.161280e-01	k: 70343	n:170000
ZFHX4   170000 perm   101 sec   (1691 perm/sec)   p_kst 4.137824e-01   p_cons 4.341176e-03   p_joint 1.195882e-02

Joint ci ratio: 9.379177e-02	ci left: 9.160104e-03	ci right 1.006691e-02	k: 1729	n:180000
Cons ci ratio: 1.390722e-01	ci left: 4.088741e-03	ci right 4.705167e-03	k: 790	n:180000
KS ci ratio: 1.099281e-02	ci left: 4.117066e-01	ci right 4.162629e-01	k: 74517	n:180000
ZFHX4   180000 perm   107 sec   (1681 perm/sec)   p_kst 4.139833e-01   p_cons 4.388889e-03   p_joint 9.605556e-03

Joint ci ratio: 9.172512e-02	ci left: 9.084120e-03	ci right 9.962521e-03	k: 1808	n:190000
Cons ci ratio: 1.356033e-01	ci left: 4.081918e-03	ci right 4.680727e-03	k: 831	n:190000
KS ci ratio: 1.069311e-02	ci left: 4.120627e-01	ci right 4.164978e-01	k: 78713	n:190000
ZFHX4   190000 perm   114 sec   (1671 perm/sec)   p_kst 4.142789e-01   p_cons 4.373684e-03   p_joint 9.515789e-03

Joint ci ratio: 8.750199e-02	ci left: 9.500063e-03	ci right 1.037423e-02	k: 1986	n:200000
Cons ci ratio: 1.316266e-01	ci left: 4.124305e-03	ci right 4.710202e-03	k: 882	n:200000
KS ci ratio: 1.043039e-02	ci left: 4.117452e-01	ci right 4.160673e-01	k: 82781	n:200000
ZFHX4   200000 perm   120 sec   (1662 perm/sec)   p_kst 4.139050e-01   p_cons 4.410000e-03   p_joint 9.930000e-03

Joint ci ratio: 9.002642e-02	ci left: 8.544617e-03	ci right 9.354739e-03	k: 1878	n:210000
Cons ci ratio: 1.278430e-01	ci left: 4.172107e-03	ci right 4.746465e-03	k: 935	n:210000
KS ci ratio: 1.017773e-02	ci left: 4.118589e-01	ci right 4.160768e-01	k: 86933	n:210000
ZFHX4   210000 perm   127 sec   (1653 perm/sec)   p_kst 4.139667e-01   p_cons 4.452381e-03   p_joint 8.942857e-03

Joint ci ratio: 8.513198e-02	ci left: 9.138899e-03	ci right 9.955920e-03	k: 2099	n:220000
Cons ci ratio: 1.245579e-01	ci left: 4.202568e-03	ci right 4.765156e-03	k: 985	n:220000
KS ci ratio: 9.950880e-03	ci left: 4.115591e-01	ci right 4.156795e-01	k: 90996	n:220000
ZFHX4   220000 perm   134 sec   (1645 perm/sec)   p_kst 4.136182e-01   p_cons 4.477273e-03   p_joint 9.540909e-03

Joint ci ratio: 8.325028e-02	ci left: 9.150161e-03	ci right 9.949229e-03	k: 2195	n:230000
Cons ci ratio: 1.214547e-01	ci left: 4.234768e-03	ci right 4.786529e-03	k: 1036	n:230000
KS ci ratio: 9.735750e-03	ci left: 4.114255e-01	ci right 4.154549e-01	k: 95091	n:230000
ZFHX4   230000 perm   141 sec   (1637 perm/sec)   p_kst 4.134391e-01   p_cons 4.504348e-03   p_joint 9.543478e-03

Joint ci ratio: 8.384696e-02	ci left: 8.646422e-03	ci right 9.407173e-03	k: 2165	n:240000
Cons ci ratio: 1.187371e-01	ci left: 4.252314e-03	ci right 4.793093e-03	k: 1084	n:240000
KS ci ratio: 9.529734e-03	ci left: 4.115204e-01	ci right 4.154650e-01	k: 99238	n:240000
ZFHX4   240000 perm   148 sec   (1627 perm/sec)   p_kst 4.134917e-01   p_cons 4.516667e-03   p_joint 9.020833e-03

Joint ci ratio: 7.848391e-02	ci left: 9.492064e-03	ci right 1.027136e-02	k: 2469	n:250000
Cons ci ratio: 1.168171e-01	ci left: 4.221975e-03	ci right 4.749614e-03	k: 1120	n:250000
KS ci ratio: 9.416649e-03	ci left: 4.074595e-01	ci right 4.113186e-01	k: 102347	n:250000
ZFHX4   250000 perm   154 sec   (1619 perm/sec)   p_kst 4.093880e-01   p_cons 4.480000e-03   p_joint 9.876000e-03

Joint ci ratio: 7.770877e-02	ci left: 9.315503e-03	ci right 1.007241e-02	k: 2519	n:260000
Cons ci ratio: 1.148877e-01	ci left: 4.201507e-03	ci right 4.717327e-03	k: 1158	n:260000
KS ci ratio: 9.231795e-03	ci left: 4.076012e-01	ci right 4.113854e-01	k: 106468	n:260000
ZFHX4   260000 perm   161 sec   (1611 perm/sec)   p_kst 4.094923e-01   p_cons 4.453846e-03   p_joint 9.688462e-03

Joint ci ratio: 7.670019e-02	ci left: 9.213823e-03	ci right 9.952317e-03	k: 2586	n:270000
Cons ci ratio: 1.128615e-01	ci left: 4.197020e-03	ci right 4.702597e-03	k: 1200	n:270000
KS ci ratio: 9.063245e-03	ci left: 4.074222e-01	ci right 4.111353e-01	k: 110505	n:270000
ZFHX4   270000 perm   168 sec   (1603 perm/sec)   p_kst 4.092778e-01   p_cons 4.444444e-03   p_joint 9.577778e-03

Joint ci ratio: 8.076620e-02	ci left: 8.005763e-03	ci right 8.683044e-03	k: 2335	n:280000
Cons ci ratio: 1.204590e-01	ci left: 3.540824e-03	ci right 3.998113e-03	k: 1054	n:280000
KS ci ratio: 8.900641e-03	ci left: 4.074172e-01	ci right 4.110632e-01	k: 114587	n:280000
ZFHX4   280000 perm   176 sec   (1594 perm/sec)   p_kst 4.092393e-01   p_cons 3.764286e-03   p_joint 8.339286e-03

Joint ci ratio: 7.669587e-02	ci left: 8.585045e-03	ci right 9.273099e-03	k: 2588	n:290000
Cons ci ratio: 1.173802e-01	ci left: 3.606094e-03	ci right 4.059083e-03	k: 1110	n:290000
KS ci ratio: 8.746299e-03	ci left: 4.074235e-01	ci right 4.110059e-01	k: 118672	n:290000
ZFHX4   290000 perm   183 sec   (1585 perm/sec)   p_kst 4.092138e-01   p_cons 3.827586e-03   p_joint 8.924138e-03

Joint ci ratio: 7.548183e-02	ci left: 8.573547e-03	ci right 9.249324e-03	k: 2672	n:300000
Cons ci ratio: 1.152720e-01	ci left: 3.618582e-03	ci right 4.064420e-03	k: 1151	n:300000
KS ci ratio: 8.597523e-03	ci left: 4.075530e-01	ci right 4.110754e-01	k: 122794	n:300000
ZFHX4   300000 perm   190 sec   (1576 perm/sec)   p_kst 4.093133e-01   p_cons 3.836667e-03   p_joint 8.906667e-03

Joint ci ratio: 5.686069e-02	ci left: 1.467045e-02	ci right 1.553220e-02	k: 4680	n:310000
Cons ci ratio: 9.264563e-02	ci left: 5.475822e-03	ci right 6.010901e-03	k: 1779	n:310000
KS ci ratio: 8.458911e-03	ci left: 4.075135e-01	ci right 4.109785e-01	k: 126866	n:310000
ZFHX4   310000 perm   198 sec   (1568 perm/sec)   p_kst 4.092452e-01   p_cons 5.738710e-03   p_joint 1.509677e-02

Outputting figure to mutsig2_images.part000000000194/ZFHX4.111_10891_310000_0.40925_0.0057387_0.015097.png
                gene_name: ZFHX4
               theta_stop: 0.093 
                    nperm: 310000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0060 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 2 percent done.
ZEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
Cons ci ratio: 7.056164e-03	ci left: 9.650977e-01	ci right 9.720258e-01	k: 9687	n:10000
KS ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
ZEB2   10000 perm   2 sec   (4569 perm/sec)   p_kst 6.710000e-02   p_cons 9.687000e-01   p_joint 1.415000e-01

Joint ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
Cons ci ratio: 4.550479e-03	ci left: 9.714912e-01	ci right 9.759696e-01	k: 19476	n:20000
KS ci ratio: 1.031050e-01	ci left: 6.391463e-02	ci right 7.091178e-02	k: 1347	n:20000
ZEB2   20000 perm   5 sec   (4191 perm/sec)   p_kst 6.735000e-02   p_cons 9.738000e-01   p_joint 1.197000e-01

Joint ci ratio: 5.478729e-02	ci left: 1.417584e-01	ci right 1.497770e-01	k: 4372	n:30000
Cons ci ratio: 3.704691e-03	ci left: 9.720671e-01	ci right 9.757070e-01	k: 29218	n:30000
KS ci ratio: 8.696205e-02	ci left: 6.066825e-02	ci right 6.621666e-02	k: 1902	n:30000
ZEB2   30000 perm   7 sec   (4038 perm/sec)   p_kst 6.340000e-02   p_cons 9.739333e-01   p_joint 1.457333e-01

Outputting figure to mutsig2_images.part000000000194/ZEB2.22_3681_30000_0.0634_0.97393_0.14573.png
                gene_name: ZEB2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 3 percent done.
ZFPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
Cons ci ratio: 3.471454e-02	ci left: 5.506055e-01	ci right 5.701593e-01	k: 5604	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
ZFPM2   10000 perm   2 sec   (5114 perm/sec)   p_kst 1.410000e-02   p_cons 5.604000e-01   p_joint 5.170000e-02

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 2.391441e-02	ci left: 5.663600e-01	ci right 5.801187e-01	k: 11465	n:20000
KS ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
ZFPM2   20000 perm   4 sec   (4656 perm/sec)   p_kst 1.480000e-02   p_cons 5.732500e-01   p_joint 6.980000e-02

Joint ci ratio: 8.650189e-02	ci left: 6.128872e-02	ci right 6.686273e-02	k: 1921	n:30000
Cons ci ratio: 1.962838e-02	ci left: 5.650756e-01	ci right 5.763107e-01	k: 17121	n:30000
KS ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
ZFPM2   30000 perm   7 sec   (4482 perm/sec)   p_kst 1.446667e-02   p_cons 5.707000e-01   p_joint 6.403333e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.691660e-02	ci left: 5.682100e-01	ci right 5.779293e-01	k: 22923	n:40000
KS ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
ZFPM2   40000 perm   9 sec   (4363 perm/sec)   p_kst 1.450000e-02   p_cons 5.730750e-01   p_joint 5.670000e-02

Joint ci ratio: 7.194903e-02	ci left: 5.402017e-02	ci right 5.807157e-02	k: 2801	n:50000
Cons ci ratio: 1.510650e-02	ci left: 5.695113e-01	ci right 5.782001e-01	k: 28693	n:50000
KS ci ratio: 1.430303e-01	ci left: 1.374053e-02	ci right 1.587634e-02	k: 739	n:50000
ZFPM2   50000 perm   12 sec   (4269 perm/sec)   p_kst 1.478000e-02   p_cons 5.738600e-01   p_joint 5.602000e-02

Joint ci ratio: 7.370864e-02	ci left: 4.335496e-02	ci right 4.668923e-02	k: 2700	n:60000
Cons ci ratio: 1.375682e-02	ci left: 5.710827e-01	ci right 5.790101e-01	k: 34503	n:60000
KS ci ratio: 1.309431e-01	ci left: 1.375222e-02	ci right 1.569514e-02	k: 882	n:60000
ZFPM2   60000 perm   14 sec   (4193 perm/sec)   p_kst 1.470000e-02   p_cons 5.750500e-01   p_joint 4.500000e-02

Joint ci ratio: 7.395648e-02	ci left: 3.715688e-02	ci right 4.002439e-02	k: 2700	n:70000
Cons ci ratio: 1.271758e-02	ci left: 5.721000e-01	ci right 5.794366e-01	k: 40304	n:70000
KS ci ratio: 1.217810e-01	ci left: 1.369676e-02	ci right 1.548667e-02	k: 1020	n:70000
ZFPM2   70000 perm   17 sec   (4126 perm/sec)   p_kst 1.457143e-02   p_cons 5.757714e-01   p_joint 3.857143e-02

Joint ci ratio: 7.157594e-02	ci left: 3.484254e-02	ci right 3.744124e-02	k: 2890	n:80000
Cons ci ratio: 1.189310e-02	ci left: 5.724664e-01	ci right 5.793281e-01	k: 46072	n:80000
KS ci ratio: 1.138592e-01	ci left: 1.376808e-02	ci right 1.544240e-02	k: 1167	n:80000
ZFPM2   80000 perm   20 sec   (4065 perm/sec)   p_kst 1.458750e-02   p_cons 5.759000e-01   p_joint 3.612500e-02

Joint ci ratio: 7.107970e-02	ci left: 3.152575e-02	ci right 3.386005e-02	k: 2941	n:90000
Cons ci ratio: 1.120784e-02	ci left: 5.728857e-01	ci right 5.793538e-01	k: 51851	n:90000
KS ci ratio: 1.066090e-01	ci left: 1.401040e-02	ci right 1.559888e-02	k: 1331	n:90000
ZFPM2   90000 perm   22 sec   (4005 perm/sec)   p_kst 1.478889e-02   p_cons 5.761222e-01   p_joint 3.267778e-02

Joint ci ratio: 7.070602e-02	ci left: 2.876461e-02	ci right 3.088277e-02	k: 2981	n:100000
Cons ci ratio: 1.065432e-02	ci left: 5.720591e-01	ci right 5.781966e-01	k: 57513	n:100000
KS ci ratio: 1.018743e-01	ci left: 1.384619e-02	ci right 1.534216e-02	k: 1458	n:100000
ZFPM2   100000 perm   25 sec   (3948 perm/sec)   p_kst 1.458000e-02   p_cons 5.751300e-01   p_joint 2.981000e-02

Joint ci ratio: 6.772691e-02	ci left: 2.855267e-02	ci right 3.056314e-02	k: 3250	n:110000
Cons ci ratio: 1.016084e-02	ci left: 5.720904e-01	ci right 5.779420e-01	k: 63252	n:110000
KS ci ratio: 9.250163e-02	ci left: 1.532004e-02	ci right 1.681472e-02	k: 1766	n:110000
ZFPM2   110000 perm   28 sec   (3892 perm/sec)   p_kst 1.605455e-02   p_cons 5.750182e-01   p_joint 2.954545e-02

Outputting figure to mutsig2_images.part000000000194/ZFPM2.21_3488_110000_0.016055_0.57502_0.029545.png
                gene_name: ZFPM2
               theta_stop: 0.093 
                    nperm: 110000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 5 percent done.
ZIC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
Cons ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
KS ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
ZIC4   10000 perm   2 sec   (5538 perm/sec)   p_kst 1.293000e-01   p_cons 1.791000e-01   p_joint 1.508000e-01

Joint ci ratio: 5.474448e-02	ci left: 1.984336e-01	ci right 2.096526e-01	k: 4080	n:20000
Cons ci ratio: 5.870414e-02	ci left: 1.769212e-01	ci right 1.876713e-01	k: 3645	n:20000
KS ci ratio: 7.063193e-02	ci left: 1.287164e-01	ci right 1.381905e-01	k: 2668	n:20000
ZIC4   20000 perm   4 sec   (5007 perm/sec)   p_kst 1.334000e-01   p_cons 1.822500e-01   p_joint 2.040000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC4.19_1278_20000_0.1334_0.18225_0.204.png
                gene_name: ZIC4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 6 percent done.
ZEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
Cons ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
KS ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
ZEB1   10000 perm   2 sec   (5080 perm/sec)   p_kst 3.259000e-01   p_cons 1.870000e-02   p_joint 5.240000e-02

Joint ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
Cons ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
KS ci ratio: 4.060684e-02	ci left: 3.113488e-01	ci right 3.243042e-01	k: 6356	n:20000
ZEB1   20000 perm   4 sec   (4641 perm/sec)   p_kst 3.178000e-01   p_cons 2.310000e-02   p_joint 7.315000e-02

Joint ci ratio: 7.748761e-02	ci left: 7.554626e-02	ci right 8.166898e-02	k: 2357	n:30000
Cons ci ratio: 1.461008e-01	ci left: 2.171899e-02	ci right 2.517415e-02	k: 702	n:30000
KS ci ratio: 3.253229e-02	ci left: 3.207957e-01	ci right 3.314380e-01	k: 9783	n:30000
ZEB1   30000 perm   7 sec   (4466 perm/sec)   p_kst 3.261000e-01   p_cons 2.340000e-02   p_joint 7.856667e-02

Joint ci ratio: 7.096464e-02	ci left: 6.835434e-02	ci right 7.340817e-02	k: 2834	n:40000
Cons ci ratio: 1.260691e-01	ci left: 2.211033e-02	ci right 2.510938e-02	k: 943	n:40000
KS ci ratio: 2.820159e-02	ci left: 3.210828e-01	ci right 3.302925e-01	k: 13027	n:40000
ZEB1   40000 perm   9 sec   (4340 perm/sec)   p_kst 3.256750e-01   p_cons 2.357500e-02   p_joint 7.085000e-02

Joint ci ratio: 6.248909e-02	ci left: 7.067555e-02	ci right 7.525418e-02	k: 3647	n:50000
Cons ci ratio: 1.137511e-01	ci left: 2.187879e-02	ci right 2.453696e-02	k: 1159	n:50000
KS ci ratio: 2.522657e-02	ci left: 3.215327e-01	ci right 3.297675e-01	k: 16282	n:50000
ZEB1   50000 perm   12 sec   (4254 perm/sec)   p_kst 3.256400e-01   p_cons 2.318000e-02   p_joint 7.294000e-02

Joint ci ratio: 5.624201e-02	ci left: 7.278957e-02	ci right 7.701832e-02	k: 4493	n:60000
Cons ci ratio: 1.033850e-01	ci left: 2.218892e-02	ci right 2.462414e-02	k: 1403	n:60000
KS ci ratio: 2.302825e-02	ci left: 3.219005e-01	ci right 3.294163e-01	k: 19539	n:60000
ZEB1   60000 perm   14 sec   (4181 perm/sec)   p_kst 3.256500e-01   p_cons 2.338333e-02   p_joint 7.488333e-02

Joint ci ratio: 5.878546e-02	ci left: 5.797005e-02	ci right 6.149512e-02	k: 4180	n:70000
Cons ci ratio: 9.592609e-02	ci left: 2.218117e-02	ci right 2.443001e-02	k: 1630	n:70000
KS ci ratio: 2.133852e-02	ci left: 3.218011e-01	ci right 3.287562e-01	k: 22769	n:70000
ZEB1   70000 perm   17 sec   (4116 perm/sec)   p_kst 3.252714e-01   p_cons 2.328571e-02   p_joint 5.971429e-02

Outputting figure to mutsig2_images.part000000000194/ZEB1.18_3425_70000_0.32527_0.023286_0.059714.png
                gene_name: ZEB1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 8 percent done.
ZFHX3
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.932088e-02	ci left: 6.317090e-01	ci right 6.506087e-01	k: 6412	n:10000
Cons ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
KS ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
ZFHX3   10000 perm   3 sec   (3633 perm/sec)   p_kst 5.465000e-01   p_cons 6.191000e-01   p_joint 6.412000e-01

Outputting figure to mutsig2_images.part000000000194/ZFHX3.14_11148_10000_0.5465_0.6191_0.6412.png
                gene_name: ZFHX3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 9 percent done.
ZFYVE26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
KS ci ratio: 1.699539e-02	ci left: 8.344982e-01	ci right 8.489022e-01	k: 8418	n:10000
ZFYVE26   10000 perm   2 sec   (4084 perm/sec)   p_kst 8.418000e-01   p_cons 5.190000e-02   p_joint 1.987000e-01

Joint ci ratio: 5.886214e-02	ci left: 1.761304e-01	ci right 1.868623e-01	k: 3629	n:20000
Cons ci ratio: 1.195048e-01	ci left: 4.799150e-02	ci right 5.413986e-02	k: 1020	n:20000
KS ci ratio: 1.215420e-02	ci left: 8.335790e-01	ci right 8.438223e-01	k: 16775	n:20000
ZFYVE26   20000 perm   5 sec   (3746 perm/sec)   p_kst 8.387500e-01   p_cons 5.100000e-02   p_joint 1.814500e-01

Joint ci ratio: 4.442775e-02	ci left: 2.014355e-01	ci right 2.106215e-01	k: 6180	n:30000
Cons ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
KS ci ratio: 9.936534e-03	ci left: 8.341854e-01	ci right 8.425489e-01	k: 25152	n:30000
ZFYVE26   30000 perm   8 sec   (3615 perm/sec)   p_kst 8.384000e-01   p_cons 5.256667e-02   p_joint 2.060000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE26.14_7784_30000_0.8384_0.052567_0.206.png
                gene_name: ZFYVE26
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
ZIC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
Cons ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KS ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
ZIC1   10000 perm   2 sec   (5823 perm/sec)   p_kst 3.857000e-01   p_cons 5.927000e-01   p_joint 5.511000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC1.11_1356_10000_0.3857_0.5927_0.5511.png
                gene_name: ZIC1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 12 percent done.
ZFC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
Cons ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
KS ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
ZFC3H1   10000 perm   2 sec   (4459 perm/sec)   p_kst 7.320000e-01   p_cons 4.830000e-02   p_joint 1.852000e-01

Joint ci ratio: 7.072369e-02	ci left: 1.284209e-01	ci right 1.378860e-01	k: 2662	n:20000
Cons ci ratio: 1.313219e-01	ci left: 3.984279e-02	ci right 4.549114e-02	k: 852	n:20000
KS ci ratio: 1.676097e-02	ci left: 7.260549e-01	ci right 7.383775e-01	k: 14645	n:20000
ZFC3H1   20000 perm   5 sec   (4106 perm/sec)   p_kst 7.322500e-01   p_cons 4.260000e-02   p_joint 1.331000e-01

Joint ci ratio: 5.674628e-02	ci left: 1.333253e-01	ci right 1.411451e-01	k: 4116	n:30000
Cons ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
KS ci ratio: 1.365220e-02	ci left: 7.281561e-01	ci right 7.381988e-01	k: 21996	n:30000
ZFC3H1   30000 perm   8 sec   (3969 perm/sec)   p_kst 7.332000e-01   p_cons 4.183333e-02   p_joint 1.372000e-01

Joint ci ratio: 4.315129e-02	ci left: 1.673218e-01	ci right 1.747261e-01	k: 6840	n:40000
Cons ci ratio: 9.308785e-02	ci left: 4.047056e-02	ci right 4.444621e-02	k: 1697	n:40000
KS ci ratio: 1.260308e-02	ci left: 7.029894e-01	ci right 7.119305e-01	k: 28299	n:40000
ZFC3H1   40000 perm   10 sec   (3879 perm/sec)   p_kst 7.074750e-01   p_cons 4.242500e-02   p_joint 1.710000e-01

Outputting figure to mutsig2_images.part000000000194/ZFC3H1.10_6110_40000_0.70747_0.042425_0.171.png
                gene_name: ZFC3H1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 14 percent done.
ZIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
ZIM3   10000 perm   2 sec   (6251 perm/sec)   p_kst 9.717000e-01   p_cons 1.347000e-01   p_joint 4.863000e-01

Outputting figure to mutsig2_images.part000000000194/ZIM3.8_1435_10000_0.9717_0.1347_0.4863.png
                gene_name: ZIM3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 15 percent done.
ZKSCAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
Cons ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
ZKSCAN2   10000 perm   2 sec   (5637 perm/sec)   p_kst 7.520000e-02   p_cons 5.590000e-01   p_joint 2.833000e-01

Joint ci ratio: 7.117140e-02	ci left: 1.269929e-01	ci right 1.364144e-01	k: 2633	n:20000
Cons ci ratio: 2.358611e-02	ci left: 5.731235e-01	ci right 5.868532e-01	k: 11600	n:20000
KS ci ratio: 9.630520e-02	ci left: 7.280418e-02	ci right 8.021950e-02	k: 1529	n:20000
ZKSCAN2   20000 perm   4 sec   (5117 perm/sec)   p_kst 7.645000e-02   p_cons 5.800000e-01   p_joint 1.316500e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN2.8_2932_20000_0.07645_0.58_0.13165.png
                gene_name: ZKSCAN2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 17 percent done.
ZFP106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
ZFP106   10000 perm   2 sec   (5212 perm/sec)   p_kst 3.457000e-01   p_cons 1.380000e-01   p_joint 2.242000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP106.7_5728_10000_0.3457_0.138_0.2242.png
                gene_name: ZFP106
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
ZFP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
Cons ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
KS ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
ZFP14   10000 perm   2 sec   (6577 perm/sec)   p_kst 4.463000e-01   p_cons 4.332000e-01   p_joint 5.340000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP14.7_1618_10000_0.4463_0.4332_0.534.png
                gene_name: ZFP14
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
ZFP57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
ZFP57   10000 perm   2 sec   (6194 perm/sec)   p_kst 5.659000e-01   p_cons 9.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP57.7_1627_10000_0.5659_0.9982_1.png
                gene_name: ZFP57
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ZFYVE28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
ZFYVE28   10000 perm   2 sec   (5744 perm/sec)   p_kst 1.780000e-02   p_cons 2.206000e-01   p_joint 1.620000e-02

Joint ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
Cons ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
KS ci ratio: 2.002444e-01	ci left: 1.691536e-02	ci right 2.072636e-02	k: 375	n:20000
ZFYVE28   20000 perm   4 sec   (5198 perm/sec)   p_kst 1.875000e-02   p_cons 2.178000e-01   p_joint 3.940000e-02

Joint ci ratio: 1.289855e-01	ci left: 2.793717e-02	ci right 3.182125e-02	k: 895	n:30000
Cons ci ratio: 4.363757e-02	ci left: 2.073202e-01	ci right 2.166023e-01	k: 6358	n:30000
KS ci ratio: 1.621863e-01	ci left: 1.754916e-02	ci right 2.067829e-02	k: 572	n:30000
ZFYVE28   30000 perm   6 sec   (4991 perm/sec)   p_kst 1.906667e-02   p_cons 2.119333e-01   p_joint 2.983333e-02

Joint ci ratio: 1.046314e-01	ci left: 3.212354e-02	ci right 3.569454e-02	k: 1355	n:40000
Cons ci ratio: 3.757677e-02	ci left: 2.098402e-01	ci right 2.179013e-01	k: 8554	n:40000
KS ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
ZFYVE28   40000 perm   8 sec   (4854 perm/sec)   p_kst 1.877500e-02   p_cons 2.138500e-01   p_joint 3.387500e-02

Joint ci ratio: 1.053581e-01	ci left: 2.551887e-02	ci right 2.837641e-02	k: 1346	n:50000
Cons ci ratio: 3.350363e-02	ci left: 2.113262e-01	ci right 2.185470e-01	k: 10746	n:50000
KS ci ratio: 1.274793e-01	ci left: 1.737564e-02	ci right 1.976072e-02	k: 927	n:50000
ZFYVE28   50000 perm   11 sec   (4738 perm/sec)   p_kst 1.854000e-02   p_cons 2.149200e-01   p_joint 2.692000e-02

Joint ci ratio: 1.026020e-01	ci left: 2.253011e-02	ci right 2.498292e-02	k: 1424	n:60000
Cons ci ratio: 2.963427e-02	ci left: 2.224263e-01	ci right 2.291335e-01	k: 13546	n:60000
KS ci ratio: 1.168868e-01	ci left: 1.732347e-02	ci right 1.949013e-02	k: 1103	n:60000
ZFYVE28   60000 perm   13 sec   (4622 perm/sec)   p_kst 1.838333e-02   p_cons 2.257667e-01   p_joint 2.373333e-02

Joint ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
Cons ci ratio: 2.749876e-02	ci left: 2.218824e-01	ci right 2.280832e-01	k: 15748	n:70000
KS ci ratio: 1.091260e-01	ci left: 1.711139e-02	ci right 1.910027e-02	k: 1266	n:70000
ZFYVE28   70000 perm   15 sec   (4534 perm/sec)   p_kst 1.808571e-02   p_cons 2.249714e-01   p_joint 2.027143e-02

Joint ci ratio: 9.814718e-02	ci left: 1.858963e-02	ci right 2.052044e-02	k: 1563	n:80000
Cons ci ratio: 2.569959e-02	ci left: 2.223963e-01	ci right 2.281986e-01	k: 18023	n:80000
KS ci ratio: 1.013324e-01	ci left: 1.743121e-02	ci right 1.930395e-02	k: 1468	n:80000
ZFYVE28   80000 perm   18 sec   (4448 perm/sec)   p_kst 1.835000e-02   p_cons 2.252875e-01   p_joint 1.953750e-02

Joint ci ratio: 9.039586e-02	ci left: 1.954069e-02	ci right 2.140151e-02	k: 1841	n:90000
Cons ci ratio: 2.418516e-02	ci left: 2.232045e-01	ci right 2.286799e-01	k: 20334	n:90000
KS ci ratio: 9.505849e-02	ci left: 1.766219e-02	ci right 1.943570e-02	k: 1668	n:90000
ZFYVE28   90000 perm   21 sec   (4367 perm/sec)   p_kst 1.853333e-02   p_cons 2.259333e-01   p_joint 2.045556e-02

Outputting figure to mutsig2_images.part000000000194/ZFYVE28.7_2936_90000_0.018533_0.22593_0.020456.png
                gene_name: ZFYVE28
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 23 percent done.
ZMIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
ZMIZ1   10000 perm   2 sec   (5849 perm/sec)   p_kst 1.616000e-01   p_cons 1.681000e-01   p_joint 2.116000e-01

Outputting figure to mutsig2_images.part000000000194/ZMIZ1.7_3288_10000_0.1616_0.1681_0.2116.png
                gene_name: ZMIZ1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 25 percent done.
ZMYM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
Cons ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
KS ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
ZMYM6   10000 perm   2 sec   (5685 perm/sec)   p_kst 1.238000e-01   p_cons 7.236000e-01   p_joint 2.499000e-01

Joint ci ratio: 5.362397e-02	ci left: 2.051646e-01	ci right 2.165196e-01	k: 4216	n:20000
Cons ci ratio: 1.720809e-02	ci left: 7.155327e-01	ci right 7.280028e-01	k: 14436	n:20000
KS ci ratio: 7.409931e-02	ci left: 1.181830e-01	ci right 1.273270e-01	k: 2454	n:20000
ZMYM6   20000 perm   4 sec   (5100 perm/sec)   p_kst 1.227000e-01   p_cons 7.218000e-01   p_joint 2.108000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM6.7_4038_20000_0.1227_0.7218_0.2108.png
                gene_name: ZMYM6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 26 percent done.
ZFP161
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
Cons ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
KS ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
ZFP161   10000 perm   2 sec   (6375 perm/sec)   p_kst 3.355000e-01   p_cons 7.603000e-01   p_joint 4.788000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP161.6_1358_10000_0.3355_0.7603_0.4788.png
                gene_name: ZFP161
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 28 percent done.
ZFP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
ZFP91   10000 perm   2 sec   (6170 perm/sec)   p_kst 1.405000e-01   p_cons 5.240000e-02   p_joint 7.880000e-02

Joint ci ratio: 7.406493e-02	ci left: 1.182814e-01	ci right 1.274285e-01	k: 2456	n:20000
Cons ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
KS ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
ZFP91   20000 perm   4 sec   (5598 perm/sec)   p_kst 1.504000e-01   p_cons 5.285000e-02   p_joint 1.228000e-01

Joint ci ratio: 8.064878e-02	ci left: 7.004841e-02	ci right 7.596794e-02	k: 2189	n:30000
Cons ci ratio: 9.484952e-02	ci left: 5.130611e-02	ci right 5.644738e-02	k: 1615	n:30000
KS ci ratio: 5.548727e-02	ci left: 1.386613e-01	ci right 1.466080e-01	k: 4278	n:30000
ZFP91   30000 perm   6 sec   (5378 perm/sec)   p_kst 1.426000e-01   p_cons 5.383333e-02   p_joint 7.296667e-02

Outputting figure to mutsig2_images.part000000000194/ZFP91.6_1757_30000_0.1426_0.053833_0.072967.png
                gene_name: ZFP91
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 29 percent done.
ZIC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
KS ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
ZIC2   10000 perm   2 sec   (6603 perm/sec)   p_kst 6.240000e-02   p_cons 7.779000e-01   p_joint 2.280000e-01

Joint ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
Cons ci ratio: 1.494812e-02	ci left: 7.688453e-01	ci right 7.804748e-01	k: 15494	n:20000
KS ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
ZIC2   20000 perm   3 sec   (5852 perm/sec)   p_kst 6.275000e-02   p_cons 7.747000e-01   p_joint 1.144500e-01

Joint ci ratio: 6.909169e-02	ci left: 9.354219e-02	ci right 1.002694e-01	k: 2906	n:30000
Cons ci ratio: 1.199045e-02	ci left: 7.761084e-01	ci right 7.855038e-01	k: 23425	n:30000
KS ci ratio: 8.856300e-02	ci left: 5.857883e-02	ci right 6.403984e-02	k: 1838	n:30000
ZIC2   30000 perm   5 sec   (5603 perm/sec)   p_kst 6.126667e-02   p_cons 7.808333e-01   p_joint 9.686667e-02

Outputting figure to mutsig2_images.part000000000194/ZIC2.6_1611_30000_0.061267_0.78083_0.096867.png
                gene_name: ZIC2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 31 percent done.
ZIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
ZIM2   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.537000e-01   p_cons 5.462000e-01   p_joint 4.721000e-01

Outputting figure to mutsig2_images.part000000000194/ZIM2.6_1600_10000_0.1537_0.5462_0.4721.png
                gene_name: ZIM2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 32 percent done.
ZMYM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
ZMYM4   10000 perm   2 sec   (5429 perm/sec)   p_kst 2.444000e-01   p_cons 5.000000e-04   p_joint 1.230000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
KS ci ratio: 4.678674e-02	ci left: 2.536831e-01	ci right 2.658868e-01	k: 5195	n:20000
ZMYM4   20000 perm   4 sec   (4930 perm/sec)   p_kst 2.597500e-01   p_cons 3.000000e-04   p_joint 6.300000e-03

Joint ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
Cons ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
KS ci ratio: 3.851503e-02	ci left: 2.516979e-01	ci right 2.616159e-01	k: 7699	n:30000
ZMYM4   30000 perm   6 sec   (4740 perm/sec)   p_kst 2.566333e-01   p_cons 4.000000e-04   p_joint 4.200000e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
KS ci ratio: 3.334557e-02	ci left: 2.524743e-01	ci right 2.610610e-01	k: 10270	n:40000
ZMYM4   40000 perm   9 sec   (4613 perm/sec)   p_kst 2.567500e-01   p_cons 3.750000e-04   p_joint 3.250000e-03

Joint ci ratio: 3.785512e-01	ci left: 1.735999e-03	ci right 2.563509e-03	k: 106	n:50000
Cons ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
KS ci ratio: 2.991730e-02	ci left: 2.517610e-01	ci right 2.594274e-01	k: 12779	n:50000
ZMYM4   50000 perm   11 sec   (4504 perm/sec)   p_kst 2.555800e-01   p_cons 3.800000e-04   p_joint 2.120000e-03

Joint ci ratio: 3.502471e-01	ci left: 1.719231e-03	ci right 2.463582e-03	k: 124	n:60000
Cons ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
KS ci ratio: 2.728556e-02	ci left: 2.524451e-01	ci right 2.594452e-01	k: 15356	n:60000
ZMYM4   60000 perm   14 sec   (4408 perm/sec)   p_kst 2.559333e-01   p_cons 3.333333e-04   p_joint 2.066667e-03

Joint ci ratio: 3.461629e-01	ci left: 1.512706e-03	ci right 2.158284e-03	k: 127	n:70000
Cons ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
KS ci ratio: 2.526200e-02	ci left: 2.526989e-01	ci right 2.591785e-01	k: 17915	n:70000
ZMYM4   70000 perm   16 sec   (4318 perm/sec)   p_kst 2.559286e-01   p_cons 3.285714e-04   p_joint 1.814286e-03

Joint ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
Cons ci ratio: 7.277892e-01	ci left: 2.325847e-04	ci right 5.058080e-04	k: 28	n:80000
KS ci ratio: 2.370312e-02	ci left: 2.517458e-01	ci right 2.577970e-01	k: 20381	n:80000
ZMYM4   80000 perm   19 sec   (4240 perm/sec)   p_kst 2.547625e-01   p_cons 3.500000e-04   p_joint 1.637500e-03

Joint ci ratio: 2.091238e-01	ci left: 3.482238e-03	ci right 4.305802e-03	k: 349	n:90000
Cons ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
KS ci ratio: 2.232384e-02	ci left: 2.523209e-01	ci right 2.580283e-01	k: 22965	n:90000
ZMYM4   90000 perm   22 sec   (4169 perm/sec)   p_kst 2.551667e-01   p_cons 3.444444e-04   p_joint 3.877778e-03

Joint ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
Cons ci ratio: 6.721568e-01	ci left: 2.271674e-04	ci right 4.634118e-04	k: 33	n:100000
KS ci ratio: 2.119263e-02	ci left: 2.522110e-01	ci right 2.576232e-01	k: 25491	n:100000
ZMYM4   100000 perm   24 sec   (4099 perm/sec)   p_kst 2.549100e-01   p_cons 3.300000e-04   p_joint 3.520000e-03

Joint ci ratio: 2.062629e-01	ci left: 2.935197e-03	ci right 3.618680e-03	k: 359	n:110000
Cons ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
KS ci ratio: 2.021616e-02	ci left: 2.521544e-01	ci right 2.573131e-01	k: 28020	n:110000
ZMYM4   110000 perm   27 sec   (4029 perm/sec)   p_kst 2.547273e-01   p_cons 3.363636e-04   p_joint 3.263636e-03

Joint ci ratio: 2.245415e-01	ci left: 2.248967e-03	ci right 2.825493e-03	k: 303	n:120000
Cons ci ratio: 6.047608e-01	ci left: 2.451967e-04	ci right 4.634812e-04	k: 41	n:120000
KS ci ratio: 1.956042e-02	ci left: 2.482995e-01	ci right 2.532126e-01	k: 30090	n:120000
ZMYM4   120000 perm   30 sec   (3969 perm/sec)   p_kst 2.507500e-01   p_cons 3.416667e-04   p_joint 2.525000e-03

Joint ci ratio: 2.148622e-01	ci left: 2.279511e-03	ci right 2.835357e-03	k: 331	n:130000
Cons ci ratio: 5.778680e-01	ci left: 2.524978e-04	ci right 4.631540e-04	k: 45	n:130000
KS ci ratio: 1.879558e-02	ci left: 2.483457e-01	ci right 2.530654e-01	k: 32591	n:130000
ZMYM4   130000 perm   33 sec   (3911 perm/sec)   p_kst 2.507000e-01   p_cons 3.461538e-04   p_joint 2.546154e-03

Joint ci ratio: 2.257012e-01	ci left: 1.907427e-03	ci right 2.399271e-03	k: 300	n:140000
Cons ci ratio: 5.716927e-01	ci left: 2.405653e-04	ci right 4.382442e-04	k: 46	n:140000
KS ci ratio: 1.811810e-02	ci left: 2.483031e-01	ci right 2.528501e-01	k: 35080	n:140000
ZMYM4   140000 perm   36 sec   (3851 perm/sec)   p_kst 2.505714e-01   p_cons 3.285714e-04   p_joint 2.142857e-03

Joint ci ratio: 2.162083e-01	ci left: 1.950312e-03	ci right 2.429256e-03	k: 327	n:150000
Cons ci ratio: 5.435101e-01	ci left: 2.531625e-04	ci right 4.470133e-04	k: 51	n:150000
KS ci ratio: 1.749623e-02	ci left: 2.485414e-01	ci right 2.529349e-01	k: 37610	n:150000
ZMYM4   150000 perm   40 sec   (3792 perm/sec)   p_kst 2.507333e-01   p_cons 3.400000e-04   p_joint 2.180000e-03

Joint ci ratio: 2.126788e-01	ci left: 1.893469e-03	ci right 2.349873e-03	k: 338	n:160000
Cons ci ratio: 5.333527e-01	ci left: 2.481385e-04	ci right 4.332611e-04	k: 53	n:160000
KS ci ratio: 1.695825e-02	ci left: 2.482225e-01	ci right 2.524741e-01	k: 40055	n:160000
ZMYM4   160000 perm   43 sec   (3742 perm/sec)   p_kst 2.503437e-01   p_cons 3.312500e-04   p_joint 2.112500e-03

Joint ci ratio: 2.075413e-01	ci left: 1.876826e-03	ci right 2.316902e-03	k: 355	n:170000
Cons ci ratio: 5.146319e-01	ci left: 2.539581e-04	ci right 4.343909e-04	k: 57	n:170000
KS ci ratio: 1.646056e-02	ci left: 2.480896e-01	ci right 2.522130e-01	k: 42525	n:170000
ZMYM4   170000 perm   46 sec   (3693 perm/sec)   p_kst 2.501471e-01   p_cons 3.352941e-04   p_joint 2.088235e-03

Joint ci ratio: 2.024871e-01	ci left: 1.867423e-03	ci right 2.293313e-03	k: 373	n:180000
Cons ci ratio: 5.018181e-01	ci left: 2.543778e-04	ci right 4.290455e-04	k: 60	n:180000
KS ci ratio: 1.600213e-02	ci left: 2.480230e-01	ci right 2.520295e-01	k: 45004	n:180000
ZMYM4   180000 perm   49 sec   (3644 perm/sec)   p_kst 2.500222e-01   p_cons 3.333333e-04   p_joint 2.072222e-03

Joint ci ratio: 1.982926e-01	ci left: 1.849122e-03	ci right 2.261045e-03	k: 389	n:190000
Cons ci ratio: 4.824336e-01	ci left: 2.640392e-04	ci right 4.360208e-04	k: 65	n:190000
KS ci ratio: 1.556273e-02	ci left: 2.483796e-01	ci right 2.522806e-01	k: 47562	n:190000
ZMYM4   190000 perm   53 sec   (3596 perm/sec)   p_kst 2.503263e-01   p_cons 3.421053e-04   p_joint 2.047368e-03

Joint ci ratio: 1.998490e-01	ci left: 1.728150e-03	ci right 2.116514e-03	k: 383	n:200000
Cons ci ratio: 4.718300e-01	ci left: 2.640327e-04	ci right 4.310114e-04	k: 68	n:200000
KS ci ratio: 1.517864e-02	ci left: 2.481832e-01	ci right 2.519840e-01	k: 50016	n:200000
ZMYM4   200000 perm   56 sec   (3553 perm/sec)   p_kst 2.500800e-01   p_cons 3.400000e-04   p_joint 1.915000e-03

Joint ci ratio: 1.988234e-01	ci left: 1.663948e-03	ci right 2.035732e-03	k: 387	n:210000
Cons ci ratio: 4.651387e-01	ci left: 2.598586e-04	ci right 4.211281e-04	k: 70	n:210000
KS ci ratio: 1.480642e-02	ci left: 2.483913e-01	ci right 2.521013e-01	k: 52551	n:210000
ZMYM4   210000 perm   60 sec   (3508 perm/sec)   p_kst 2.502429e-01   p_cons 3.333333e-04   p_joint 1.842857e-03

Joint ci ratio: 1.955765e-01	ci left: 1.644486e-03	ci right 2.005206e-03	k: 400	n:220000
Cons ci ratio: 4.587241e-01	ci left: 2.560793e-04	ci right 4.121283e-04	k: 72	n:220000
KS ci ratio: 1.446485e-02	ci left: 2.484637e-01	ci right 2.520884e-01	k: 55060	n:220000
ZMYM4   220000 perm   63 sec   (3468 perm/sec)   p_kst 2.502727e-01   p_cons 3.272727e-04   p_joint 1.818182e-03

Joint ci ratio: 1.917887e-01	ci left: 1.639178e-03	ci right 1.990958e-03	k: 416	n:230000
Cons ci ratio: 4.495796e-01	ci left: 2.564964e-04	ci right 4.087359e-04	k: 75	n:230000
KS ci ratio: 1.415376e-02	ci left: 2.483224e-01	ci right 2.518665e-01	k: 57521	n:230000
ZMYM4   230000 perm   67 sec   (3428 perm/sec)   p_kst 2.500913e-01   p_cons 3.260870e-04   p_joint 1.808696e-03

Joint ci ratio: 1.931933e-01	ci left: 1.547077e-03	ci right 1.881808e-03	k: 410	n:240000
Cons ci ratio: 4.409609e-01	ci left: 2.569072e-04	ci right 4.055984e-04	k: 78	n:240000
KS ci ratio: 1.385082e-02	ci left: 2.484930e-01	ci right 2.519630e-01	k: 60054	n:240000
ZMYM4   240000 perm   71 sec   (3388 perm/sec)   p_kst 2.502250e-01   p_cons 3.250000e-04   p_joint 1.708333e-03

Joint ci ratio: 1.573626e-01	ci left: 2.281134e-03	ci right 2.674542e-03	k: 618	n:250000
Cons ci ratio: 4.276343e-01	ci left: 2.644446e-04	ci right 4.115476e-04	k: 83	n:250000
KS ci ratio: 1.356018e-02	ci left: 2.488263e-01	ci right 2.522274e-01	k: 62631	n:250000
ZMYM4   250000 perm   75 sec   (3347 perm/sec)   p_kst 2.505240e-01   p_cons 3.320000e-04   p_joint 2.472000e-03

Joint ci ratio: 1.618893e-01	ci left: 2.067833e-03	ci right 2.435712e-03	k: 584	n:260000
Cons ci ratio: 4.201970e-01	ci left: 2.645809e-04	ci right 4.084814e-04	k: 86	n:260000
KS ci ratio: 1.329294e-02	ci left: 2.489697e-01	ci right 2.523051e-01	k: 65165	n:260000
ZMYM4   260000 perm   79 sec   (3308 perm/sec)   p_kst 2.506346e-01   p_cons 3.307692e-04   p_joint 2.246154e-03

Joint ci ratio: 1.598551e-01	ci left: 2.044563e-03	ci right 2.403293e-03	k: 599	n:270000
Cons ci ratio: 4.131346e-01	ci left: 2.647278e-04	ci right 4.056222e-04	k: 89	n:270000
KS ci ratio: 1.305119e-02	ci left: 2.488073e-01	ci right 2.520795e-01	k: 67619	n:270000
ZMYM4   270000 perm   83 sec   (3270 perm/sec)   p_kst 2.504407e-01   p_cons 3.296296e-04   p_joint 2.218519e-03

Joint ci ratio: 1.568764e-01	ci left: 2.050431e-03	ci right 2.402856e-03	k: 622	n:280000
Cons ci ratio: 4.064168e-01	ci left: 2.648829e-04	ci right 4.029487e-04	k: 92	n:280000
KS ci ratio: 1.282144e-02	ci left: 2.486785e-01	ci right 2.518910e-01	k: 70079	n:280000
ZMYM4   280000 perm   87 sec   (3231 perm/sec)   p_kst 2.502821e-01   p_cons 3.285714e-04   p_joint 2.221429e-03

Joint ci ratio: 1.560065e-01	ci left: 2.002916e-03	ci right 2.345086e-03	k: 629	n:290000
Cons ci ratio: 3.979484e-01	ci left: 2.681470e-04	ci right 4.042350e-04	k: 96	n:290000
KS ci ratio: 1.259935e-02	ci left: 2.486794e-01	ci right 2.518359e-01	k: 72574	n:290000
ZMYM4   290000 perm   91 sec   (3195 perm/sec)   p_kst 2.502552e-01   p_cons 3.310345e-04   p_joint 2.168966e-03

Joint ci ratio: 1.545442e-01	ci left: 1.974595e-03	ci right 2.308472e-03	k: 641	n:300000
Cons ci ratio: 3.919340e-01	ci left: 2.682156e-04	ci right 4.017487e-04	k: 99	n:300000
KS ci ratio: 1.238225e-02	ci left: 2.488671e-01	ci right 2.519711e-01	k: 75125	n:300000
ZMYM4   300000 perm   95 sec   (3161 perm/sec)   p_kst 2.504167e-01   p_cons 3.300000e-04   p_joint 2.136667e-03

Joint ci ratio: 1.551561e-01	ci left: 1.895389e-03	ci right 2.217260e-03	k: 636	n:310000
Cons ci ratio: 3.824874e-01	ci left: 2.741226e-04	ci right 4.064804e-04	k: 104	n:310000
KS ci ratio: 1.218459e-02	ci left: 2.487790e-01	ci right 2.518321e-01	k: 77594	n:310000
ZMYM4   310000 perm   99 sec   (3128 perm/sec)   p_kst 2.503032e-01   p_cons 3.354839e-04   p_joint 2.051613e-03

Joint ci ratio: 1.550393e-01	ci left: 1.839157e-03	ci right 2.151222e-03	k: 637	n:320000
Cons ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
KS ci ratio: 1.199420e-02	ci left: 2.487562e-01	ci right 2.517609e-01	k: 80082	n:320000
ZMYM4   320000 perm   103 sec   (3096 perm/sec)   p_kst 2.502563e-01   p_cons 3.312500e-04   p_joint 1.990625e-03

Joint ci ratio: 1.531319e-01	ci left: 1.830040e-03	ci right 2.136387e-03	k: 653	n:330000
Cons ci ratio: 3.771399e-01	ci left: 2.657319e-04	ci right 3.918005e-04	k: 107	n:330000
KS ci ratio: 1.180036e-02	ci left: 2.491191e-01	ci right 2.520792e-01	k: 82697	n:330000
ZMYM4   330000 perm   108 sec   (3065 perm/sec)   p_kst 2.505970e-01   p_cons 3.242424e-04   p_joint 1.978788e-03

Joint ci ratio: 1.612435e-01	ci left: 1.595363e-03	ci right 1.877943e-03	k: 589	n:340000
Cons ci ratio: 3.720086e-01	ci left: 2.659091e-04	ci right 3.899275e-04	k: 110	n:340000
KS ci ratio: 1.163017e-02	ci left: 2.489914e-01	ci right 2.519070e-01	k: 85152	n:340000
ZMYM4   340000 perm   112 sec   (3034 perm/sec)   p_kst 2.504471e-01   p_cons 3.235294e-04   p_joint 1.732353e-03

Joint ci ratio: 1.597626e-01	ci left: 1.579947e-03	ci right 1.856979e-03	k: 600	n:350000
Cons ci ratio: 3.670813e-01	ci left: 2.660872e-04	ci right 3.881507e-04	k: 113	n:350000
KS ci ratio: 1.146348e-02	ci left: 2.489910e-01	ci right 2.518646e-01	k: 87649	n:350000
ZMYM4   350000 perm   117 sec   (3001 perm/sec)   p_kst 2.504257e-01   p_cons 3.228571e-04   p_joint 1.714286e-03

Joint ci ratio: 1.578059e-01	ci left: 1.576070e-03	ci right 1.848718e-03	k: 615	n:360000
Cons ci ratio: 3.577853e-01	ci left: 2.738453e-04	ci right 3.955461e-04	k: 119	n:360000
KS ci ratio: 1.130392e-02	ci left: 2.489854e-01	ci right 2.518186e-01	k: 90144	n:360000
ZMYM4   360000 perm   121 sec   (2969 perm/sec)   p_kst 2.504000e-01   p_cons 3.305556e-04   p_joint 1.708333e-03

Joint ci ratio: 1.650823e-01	ci left: 1.396004e-03	ci right 1.649743e-03	k: 562	n:370000
Cons ci ratio: 3.548411e-01	ci left: 2.713655e-04	ci right 3.907431e-04	k: 121	n:370000
KS ci ratio: 1.114948e-02	ci left: 2.490262e-01	ci right 2.518209e-01	k: 92656	n:370000
ZMYM4   370000 perm   126 sec   (2939 perm/sec)   p_kst 2.504216e-01   p_cons 3.270270e-04   p_joint 1.518919e-03

Joint ci ratio: 1.192783e-01	ci left: 2.665115e-03	ci right 3.005694e-03	k: 1076	n:380000
Cons ci ratio: 3.533968e-01	ci left: 2.666217e-04	ci right 3.833254e-04	k: 122	n:380000
KS ci ratio: 1.127037e-02	ci left: 2.401162e-01	ci right 2.428403e-01	k: 91761	n:380000
ZMYM4   380000 perm   131 sec   (2910 perm/sec)   p_kst 2.414763e-01   p_cons 3.210526e-04   p_joint 2.831579e-03

Joint ci ratio: 1.181872e-01	ci left: 2.646537e-03	ci right 2.981431e-03	k: 1096	n:390000
Cons ci ratio: 3.519700e-01	ci left: 2.621221e-04	ci right 3.762871e-04	k: 123	n:390000
KS ci ratio: 1.112555e-02	ci left: 2.401139e-01	ci right 2.428028e-01	k: 94168	n:390000
ZMYM4   390000 perm   135 sec   (2881 perm/sec)   p_kst 2.414564e-01   p_cons 3.153846e-04   p_joint 2.810256e-03

Joint ci ratio: 1.528079e-01	ci left: 1.516977e-03	ci right 1.770330e-03	k: 656	n:400000
Cons ci ratio: 3.464264e-01	ci left: 2.646921e-04	ci right 3.777534e-04	k: 127	n:400000
KS ci ratio: 1.049937e-02	ci left: 2.570689e-01	ci right 2.597846e-01	k: 103370	n:400000
ZMYM4   400000 perm   140 sec   (2853 perm/sec)   p_kst 2.584250e-01   p_cons 3.175000e-04   p_joint 1.640000e-03

Joint ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
Cons ci ratio: 3.411369e-01	ci left: 2.671501e-04	ci right 3.791349e-04	k: 131	n:410000
KS ci ratio: 1.037373e-02	ci left: 2.569680e-01	ci right 2.596500e-01	k: 105906	n:410000
ZMYM4   410000 perm   145 sec   (2827 perm/sec)   p_kst 2.583073e-01   p_cons 3.195122e-04   p_joint 1.534146e-03

Joint ci ratio: 1.565577e-01	ci left: 1.373779e-03	ci right 1.609375e-03	k: 625	n:420000
Cons ci ratio: 3.360824e-01	ci left: 2.695036e-04	ci right 3.804384e-04	k: 135	n:420000
KS ci ratio: 1.024918e-02	ci left: 2.569958e-01	ci right 2.596457e-01	k: 108494	n:420000
ZMYM4   420000 perm   150 sec   (2802 perm/sec)   p_kst 2.583190e-01   p_cons 3.214286e-04   p_joint 1.488095e-03

Joint ci ratio: 1.547151e-01	ci left: 1.375356e-03	ci right 1.608189e-03	k: 640	n:430000
Cons ci ratio: 3.312461e-01	ci left: 2.717592e-04	ci right 3.816697e-04	k: 139	n:430000
KS ci ratio: 1.013103e-02	ci left: 2.569458e-01	ci right 2.595644e-01	k: 111049	n:430000
ZMYM4   430000 perm   155 sec   (2775 perm/sec)   p_kst 2.582535e-01   p_cons 3.232558e-04   p_joint 1.488372e-03

Joint ci ratio: 1.528194e-01	ci left: 1.379062e-03	ci right 1.609400e-03	k: 656	n:440000
Cons ci ratio: 3.254843e-01	ci left: 2.760100e-04	ci right 3.852923e-04	k: 144	n:440000
KS ci ratio: 1.001676e-02	ci left: 2.569028e-01	ci right 2.594913e-01	k: 113606	n:440000
ZMYM4   440000 perm   160 sec   (2749 perm/sec)   p_kst 2.581955e-01   p_cons 3.272727e-04   p_joint 1.490909e-03

Joint ci ratio: 1.561912e-01	ci left: 1.288595e-03	ci right 1.509016e-03	k: 628	n:450000
Cons ci ratio: 3.221687e-01	ci left: 2.760012e-04	ci right 3.839369e-04	k: 147	n:450000
KS ci ratio: 9.904036e-03	ci left: 2.569484e-01	ci right 2.595081e-01	k: 116202	n:450000
ZMYM4   450000 perm   165 sec   (2723 perm/sec)   p_kst 2.582267e-01   p_cons 3.266667e-04   p_joint 1.395556e-03

Joint ci ratio: 1.555756e-01	ci left: 1.271027e-03	ci right 1.487506e-03	k: 633	n:460000
Cons ci ratio: 3.189524e-01	ci left: 2.759983e-04	ci right 3.826352e-04	k: 150	n:460000
KS ci ratio: 9.799923e-03	ci left: 2.568012e-01	ci right 2.593323e-01	k: 118710	n:460000
ZMYM4   460000 perm   170 sec   (2698 perm/sec)   p_kst 2.580652e-01   p_cons 3.260870e-04   p_joint 1.376087e-03

Joint ci ratio: 1.540048e-01	ci left: 1.270572e-03	ci right 1.484587e-03	k: 646	n:470000
Cons ci ratio: 3.179022e-01	ci left: 2.720835e-04	ci right 3.767913e-04	k: 151	n:470000
KS ci ratio: 9.694821e-03	ci left: 2.568260e-01	ci right 2.593301e-01	k: 121296	n:470000
ZMYM4   470000 perm   176 sec   (2673 perm/sec)   p_kst 2.580766e-01   p_cons 3.212766e-04   p_joint 1.374468e-03

Joint ci ratio: 1.519056e-01	ci left: 1.280167e-03	ci right 1.492592e-03	k: 664	n:480000
Cons ci ratio: 3.098512e-01	ci left: 2.817695e-04	ci right 3.869162e-04	k: 159	n:480000
KS ci ratio: 9.593970e-03	ci left: 2.568126e-01	ci right 2.592903e-01	k: 123864	n:480000
ZMYM4   480000 perm   181 sec   (2648 perm/sec)   p_kst 2.580500e-01   p_cons 3.312500e-04   p_joint 1.383333e-03

Joint ci ratio: 1.507768e-01	ci left: 1.273676e-03	ci right 1.483311e-03	k: 674	n:490000
Cons ci ratio: 3.069867e-01	ci left: 2.816677e-04	ci right 3.856148e-04	k: 162	n:490000
KS ci ratio: 9.494531e-03	ci left: 2.568670e-01	ci right 2.593195e-01	k: 126465	n:490000
ZMYM4   490000 perm   187 sec   (2623 perm/sec)   p_kst 2.580918e-01   p_cons 3.306122e-04   p_joint 1.375510e-03

Joint ci ratio: 1.294016e-01	ci left: 1.713430e-03	ci right 1.952402e-03	k: 915	n:500000
Cons ci ratio: 3.023835e-01	ci left: 2.852701e-04	ci right 3.886644e-04	k: 167	n:500000
KS ci ratio: 9.401214e-03	ci left: 2.567936e-01	ci right 2.592212e-01	k: 129003	n:500000
ZMYM4   500000 perm   192 sec   (2598 perm/sec)   p_kst 2.580060e-01   p_cons 3.340000e-04   p_joint 1.830000e-03

Joint ci ratio: 1.282175e-01	ci left: 1.712093e-03	ci right 1.948526e-03	k: 932	n:510000
Cons ci ratio: 3.014882e-01	ci left: 2.814887e-04	ci right 3.831526e-04	k: 168	n:510000
KS ci ratio: 9.304924e-03	ci left: 2.569562e-01	ci right 2.593603e-01	k: 131660	n:510000
ZMYM4   510000 perm   198 sec   (2575 perm/sec)   p_kst 2.581569e-01   p_cons 3.294118e-04   p_joint 1.827451e-03

Joint ci ratio: 1.293355e-01	ci left: 1.649386e-03	ci right 1.879299e-03	k: 916	n:520000
Cons ci ratio: 2.962740e-01	ci left: 2.867491e-04	ci right 3.881851e-04	k: 174	n:520000
KS ci ratio: 9.216712e-03	ci left: 2.568976e-01	ci right 2.592782e-01	k: 134205	n:520000
ZMYM4   520000 perm   204 sec   (2553 perm/sec)   p_kst 2.580865e-01   p_cons 3.346154e-04   p_joint 1.761538e-03

Joint ci ratio: 1.287065e-01	ci left: 1.634698e-03	ci right 1.861370e-03	k: 925	n:530000
Cons ci ratio: 2.929448e-01	ci left: 2.883282e-04	ci right 3.889641e-04	k: 178	n:530000
KS ci ratio: 9.129028e-03	ci left: 2.569223e-01	ci right 2.592803e-01	k: 136793	n:530000
ZMYM4   530000 perm   209 sec   (2531 perm/sec)   p_kst 2.581000e-01   p_cons 3.358491e-04   p_joint 1.745283e-03

Joint ci ratio: 1.272710e-01	ci left: 1.642070e-03	ci right 1.867033e-03	k: 946	n:540000
Cons ci ratio: 2.881545e-01	ci left: 2.932904e-04	ci right 3.936795e-04	k: 184	n:540000
KS ci ratio: 9.044631e-03	ci left: 2.569111e-01	ci right 2.592471e-01	k: 139362	n:540000
ZMYM4   540000 perm   215 sec   (2509 perm/sec)   p_kst 2.580778e-01   p_cons 3.407407e-04   p_joint 1.751852e-03

Joint ci ratio: 1.273404e-01	ci left: 1.610452e-03	ci right 1.831213e-03	k: 945	n:550000
Cons ci ratio: 2.835917e-01	ci left: 2.980850e-04	ci right 3.982106e-04	k: 190	n:550000
KS ci ratio: 8.962362e-03	ci left: 2.569076e-01	ci right 2.592222e-01	k: 141935	n:550000
ZMYM4   550000 perm   221 sec   (2488 perm/sec)   p_kst 2.580636e-01   p_cons 3.454545e-04   p_joint 1.718182e-03

Joint ci ratio: 1.265410e-01	ci left: 1.602442e-03	ci right 1.820622e-03	k: 957	n:560000
Cons ci ratio: 2.821189e-01	ci left: 2.960801e-04	ci right 3.949239e-04	k: 192	n:560000
KS ci ratio: 8.881345e-03	ci left: 2.569453e-01	ci right 2.592393e-01	k: 144531	n:560000
ZMYM4   560000 perm   227 sec   (2468 perm/sec)   p_kst 2.580911e-01   p_cons 3.428571e-04   p_joint 1.708929e-03

Joint ci ratio: 1.277507e-01	ci left: 1.543751e-03	ci right 1.756102e-03	k: 939	n:570000
Cons ci ratio: 2.764465e-01	ci left: 3.039382e-04	ci right 4.030105e-04	k: 200	n:570000
KS ci ratio: 8.804623e-03	ci left: 2.568890e-01	ci right 2.591626e-01	k: 147074	n:570000
ZMYM4   570000 perm   233 sec   (2447 perm/sec)   p_kst 2.580246e-01   p_cons 3.508772e-04   p_joint 1.647368e-03

Joint ci ratio: 1.278889e-01	ci left: 1.513795e-03	ci right 1.722268e-03	k: 937	n:580000
Cons ci ratio: 2.737361e-01	ci left: 3.051189e-04	ci right 4.034331e-04	k: 204	n:580000
KS ci ratio: 8.726594e-03	ci left: 2.569776e-01	ci right 2.592317e-01	k: 149700	n:580000
ZMYM4   580000 perm   239 sec   (2426 perm/sec)   p_kst 2.581034e-01   p_cons 3.517241e-04   p_joint 1.615517e-03

Joint ci ratio: 1.046419e-01	ci left: 2.248683e-03	ci right 2.498616e-03	k: 1399	n:590000
Cons ci ratio: 2.717550e-01	ci left: 3.046844e-04	ci right 4.020269e-04	k: 207	n:590000
KS ci ratio: 8.641311e-03	ci left: 2.574746e-01	ci right 2.597108e-01	k: 152569	n:590000
ZMYM4   590000 perm   245 sec   (2405 perm/sec)   p_kst 2.585915e-01   p_cons 3.508475e-04   p_joint 2.371186e-03

Joint ci ratio: 1.038295e-01	ci left: 2.246916e-03	ci right 2.494595e-03	k: 1421	n:600000
Cons ci ratio: 2.698162e-01	ci left: 3.042669e-04	ci right 4.006651e-04	k: 210	n:600000
KS ci ratio: 8.573430e-03	ci left: 2.572860e-01	ci right 2.595030e-01	k: 155036	n:600000
ZMYM4   600000 perm   252 sec   (2385 perm/sec)   p_kst 2.583933e-01   p_cons 3.500000e-04   p_joint 2.368333e-03

Joint ci ratio: 1.029285e-01	ci left: 2.250005e-03	ci right 2.495743e-03	k: 1446	n:610000
Cons ci ratio: 2.679185e-01	ci left: 3.038654e-04	ci right 3.993455e-04	k: 213	n:610000
KS ci ratio: 8.502900e-03	ci left: 2.572936e-01	ci right 2.594923e-01	k: 157619	n:610000
ZMYM4   610000 perm   258 sec   (2366 perm/sec)   p_kst 2.583918e-01   p_cons 3.491803e-04   p_joint 2.370492e-03

Joint ci ratio: 1.069304e-01	ci left: 2.047221e-03	ci right 2.280051e-03	k: 1340	n:620000
Cons ci ratio: 2.666755e-01	ci left: 3.019740e-04	ci right 3.963460e-04	k: 215	n:620000
KS ci ratio: 8.434864e-03	ci left: 2.572656e-01	ci right 2.594464e-01	k: 160180	n:620000
ZMYM4   620000 perm   264 sec   (2347 perm/sec)   p_kst 2.583548e-01   p_cons 3.467742e-04   p_joint 2.161290e-03

Joint ci ratio: 1.068126e-01	ci left: 2.019358e-03	ci right 2.248751e-03	k: 1343	n:630000
Cons ci ratio: 2.654498e-01	ci left: 3.001436e-04	ci right 3.934407e-04	k: 217	n:630000
KS ci ratio: 8.370654e-03	ci left: 2.571371e-01	ci right 2.593001e-01	k: 162677	n:630000
ZMYM4   630000 perm   271 sec   (2327 perm/sec)   p_kst 2.582175e-01   p_cons 3.444444e-04   p_joint 2.131746e-03

Joint ci ratio: 1.088627e-01	ci left: 1.911782e-03	ci right 2.133389e-03	k: 1293	n:640000
Cons ci ratio: 2.624567e-01	ci left: 3.027495e-04	ci right 3.956214e-04	k: 222	n:640000
KS ci ratio: 8.304601e-03	ci left: 2.571640e-01	ci right 2.593101e-01	k: 165271	n:640000
ZMYM4   640000 perm   277 sec   (2310 perm/sec)   p_kst 2.582359e-01   p_cons 3.468750e-04   p_joint 2.020312e-03

Joint ci ratio: 1.084870e-01	ci left: 1.895839e-03	ci right 2.114791e-03	k: 1302	n:650000
Cons ci ratio: 2.612879e-01	ci left: 3.009668e-04	ci right 3.928134e-04	k: 224	n:650000
KS ci ratio: 8.242967e-03	ci left: 2.570565e-01	ci right 2.591857e-01	k: 167778	n:650000
ZMYM4   650000 perm   284 sec   (2292 perm/sec)   p_kst 2.581200e-01   p_cons 3.446154e-04   p_joint 2.003077e-03

Joint ci ratio: 1.383358e-01	ci left: 1.131080e-03	ci right 1.300620e-03	k: 801	n:660000
Cons ci ratio: 2.806753e-01	ci left: 2.540352e-04	ci right 3.383317e-04	k: 194	n:660000
KS ci ratio: 8.180483e-03	ci left: 2.570552e-01	ci right 2.591681e-01	k: 170353	n:660000
ZMYM4   660000 perm   290 sec   (2275 perm/sec)   p_kst 2.581106e-01   p_cons 2.939394e-04   p_joint 1.213636e-03

Joint ci ratio: 1.372280e-01	ci left: 1.132932e-03	ci right 1.301279e-03	k: 814	n:670000
Cons ci ratio: 2.792472e-01	ci left: 2.530191e-04	ci right 3.364761e-04	k: 196	n:670000
KS ci ratio: 8.117532e-03	ci left: 2.571419e-01	ci right 2.592393e-01	k: 172987	n:670000
ZMYM4   670000 perm   297 sec   (2257 perm/sec)   p_kst 2.581896e-01   p_cons 2.925373e-04   p_joint 1.214925e-03

Joint ci ratio: 1.359820e-01	ci left: 1.137577e-03	ci right 1.304954e-03	k: 829	n:680000
Cons ci ratio: 2.757691e-01	ci left: 2.561396e-04	ci right 3.393912e-04	k: 201	n:680000
KS ci ratio: 8.058239e-03	ci left: 2.571204e-01	ci right 2.592022e-01	k: 175549	n:680000
ZMYM4   680000 perm   304 sec   (2238 perm/sec)   p_kst 2.581603e-01   p_cons 2.955882e-04   p_joint 1.219118e-03

Joint ci ratio: 1.368945e-01	ci left: 1.105691e-03	ci right 1.269558e-03	k: 818	n:690000
Cons ci ratio: 2.737438e-01	ci left: 2.564758e-04	ci right 3.391191e-04	k: 204	n:690000
KS ci ratio: 7.999985e-03	ci left: 2.571112e-01	ci right 2.591778e-01	k: 178119	n:690000
ZMYM4   690000 perm   311 sec   (2221 perm/sec)   p_kst 2.581435e-01   p_cons 2.956522e-04   p_joint 1.185507e-03

Joint ci ratio: 1.374851e-01	ci left: 1.080237e-03	ci right 1.241079e-03	k: 811	n:700000
Cons ci ratio: 2.730790e-01	ci left: 2.541425e-04	ci right 3.358008e-04	k: 205	n:700000
KS ci ratio: 7.942502e-03	ci left: 2.571251e-01	ci right 2.591769e-01	k: 180705	n:700000
ZMYM4   700000 perm   318 sec   (2204 perm/sec)   p_kst 2.581500e-01   p_cons 2.928571e-04   p_joint 1.158571e-03

Joint ci ratio: 1.370644e-01	ci left: 1.071823e-03	ci right 1.230884e-03	k: 816	n:710000
Cons ci ratio: 2.724189e-01	ci left: 2.518751e-04	ci right 3.325758e-04	k: 206	n:710000
KS ci ratio: 7.884501e-03	ci left: 2.572231e-01	ci right 2.592606e-01	k: 183351	n:710000
ZMYM4   710000 perm   325 sec   (2187 perm/sec)   p_kst 2.582408e-01   p_cons 2.901408e-04   p_joint 1.149296e-03

Joint ci ratio: 1.363986e-01	ci left: 1.067667e-03	ci right 1.225279e-03	k: 824	n:720000
Cons ci ratio: 2.717636e-01	ci left: 2.496709e-04	ci right 3.294402e-04	k: 207	n:720000
KS ci ratio: 7.829199e-03	ci left: 2.572476e-01	ci right 2.592710e-01	k: 185946	n:720000
ZMYM4   720000 perm   332 sec   (2169 perm/sec)   p_kst 2.582583e-01   p_cons 2.875000e-04   p_joint 1.144444e-03

Joint ci ratio: 1.361520e-01	ci left: 1.057011e-03	ci right 1.212745e-03	k: 827	n:730000
Cons ci ratio: 2.698247e-01	ci left: 2.500814e-04	ci right 3.293152e-04	k: 210	n:730000
KS ci ratio: 7.776462e-03	ci left: 2.572018e-01	ci right 2.592111e-01	k: 188490	n:730000
ZMYM4   730000 perm   339 sec   (2152 perm/sec)   p_kst 2.582055e-01   p_cons 2.876712e-04   p_joint 1.132877e-03

Joint ci ratio: 1.133055e-01	ci left: 1.523347e-03	ci right 1.707616e-03	k: 1194	n:740000
Cons ci ratio: 2.666831e-01	ci left: 2.530044e-04	ci right 3.320750e-04	k: 215	n:740000
KS ci ratio: 7.724205e-03	ci left: 2.571856e-01	ci right 2.591812e-01	k: 191055	n:740000
ZMYM4   740000 perm   347 sec   (2135 perm/sec)   p_kst 2.581824e-01   p_cons 2.905405e-04   p_joint 1.613514e-03

Joint ci ratio: 1.127411e-01	ci left: 1.518583e-03	ci right 1.701301e-03	k: 1206	n:750000
Cons ci ratio: 2.660683e-01	ci left: 2.508752e-04	ci right 3.290696e-04	k: 216	n:750000
KS ci ratio: 7.672240e-03	ci left: 2.572071e-01	ci right 2.591894e-01	k: 193648	n:750000
ZMYM4   750000 perm   354 sec   (2119 perm/sec)   p_kst 2.581973e-01   p_cons 2.880000e-04   p_joint 1.608000e-03

Joint ci ratio: 1.121391e-01	ci left: 1.515226e-03	ci right 1.696501e-03	k: 1219	n:760000
Cons ci ratio: 2.648507e-01	ci left: 2.500307e-04	ci right 3.275460e-04	k: 218	n:760000
KS ci ratio: 7.619739e-03	ci left: 2.573070e-01	ci right 2.592764e-01	k: 196301	n:760000
ZMYM4   760000 perm   361 sec   (2104 perm/sec)   p_kst 2.582908e-01   p_cons 2.868421e-04   p_joint 1.603947e-03

Joint ci ratio: 1.117738e-01	ci left: 1.505646e-03	ci right 1.685150e-03	k: 1227	n:770000
Cons ci ratio: 2.648512e-01	ci left: 2.467835e-04	ci right 3.232923e-04	k: 218	n:770000
KS ci ratio: 7.570070e-03	ci left: 2.573148e-01	ci right 2.592714e-01	k: 198885	n:770000
ZMYM4   770000 perm   369 sec   (2088 perm/sec)   p_kst 2.582922e-01   p_cons 2.831169e-04   p_joint 1.593506e-03

Joint ci ratio: 1.113219e-01	ci left: 1.498805e-03	ci right 1.676724e-03	k: 1237	n:780000
Cons ci ratio: 2.612955e-01	ci left: 2.508048e-04	ci right 3.273458e-04	k: 224	n:780000
KS ci ratio: 7.522594e-03	ci left: 2.572598e-01	ci right 2.592036e-01	k: 201420	n:780000
ZMYM4   780000 perm   376 sec   (2073 perm/sec)   p_kst 2.582308e-01   p_cons 2.871795e-04   p_joint 1.585897e-03

Joint ci ratio: 1.106094e-01	ci left: 1.499524e-03	ci right 1.676314e-03	k: 1253	n:790000
Cons ci ratio: 2.601420e-01	ci left: 2.499962e-04	ci right 3.258989e-04	k: 226	n:790000
KS ci ratio: 7.473851e-03	ci left: 2.573161e-01	ci right 2.592477e-01	k: 204042	n:790000
ZMYM4   790000 perm   384 sec   (2059 perm/sec)   p_kst 2.582810e-01   p_cons 2.860759e-04   p_joint 1.586076e-03

Joint ci ratio: 1.128405e-01	ci left: 1.421239e-03	ci right 1.592404e-03	k: 1204	n:800000
Cons ci ratio: 2.595712e-01	ci left: 2.480398e-04	ci right 3.231565e-04	k: 227	n:800000
KS ci ratio: 7.427716e-03	ci left: 2.572849e-01	ci right 2.592043e-01	k: 206595	n:800000
ZMYM4   800000 perm   391 sec   (2044 perm/sec)   p_kst 2.582437e-01   p_cons 2.837500e-04   p_joint 1.505000e-03

Joint ci ratio: 1.129354e-01	ci left: 1.401292e-03	ci right 1.570206e-03	k: 1202	n:810000
Cons ci ratio: 2.584403e-01	ci left: 2.472864e-04	ci right 3.217960e-04	k: 229	n:810000
KS ci ratio: 7.381353e-03	ci left: 2.573101e-01	ci right 2.592176e-01	k: 209193	n:810000
ZMYM4   810000 perm   399 sec   (2029 perm/sec)   p_kst 2.582630e-01   p_cons 2.827160e-04   p_joint 1.483951e-03

Joint ci ratio: 1.144714e-01	ci left: 1.346286e-03	ci right 1.510926e-03	k: 1170	n:820000
Cons ci ratio: 2.578806e-01	ci left: 2.454113e-04	ci right 3.191700e-04	k: 230	n:820000
KS ci ratio: 7.335218e-03	ci left: 2.573675e-01	ci right 2.592635e-01	k: 211818	n:820000
ZMYM4   820000 perm   407 sec   (2015 perm/sec)   p_kst 2.583146e-01   p_cons 2.804878e-04   p_joint 1.426829e-03

Joint ci ratio: 1.145704e-01	ci left: 1.327725e-03	ci right 1.490245e-03	k: 1168	n:830000
Cons ci ratio: 2.567715e-01	ci left: 2.447088e-04	ci right 3.178893e-04	k: 232	n:830000
KS ci ratio: 7.290579e-03	ci left: 2.573899e-01	ci right 2.592744e-01	k: 214415	n:830000
ZMYM4   830000 perm   415 sec   (2001 perm/sec)   p_kst 2.583313e-01   p_cons 2.795181e-04   p_joint 1.407229e-03

Joint ci ratio: 1.138905e-01	ci left: 1.328109e-03	ci right 1.489646e-03	k: 1182	n:840000
Cons ci ratio: 2.540597e-01	ci left: 2.473670e-04	ci right 3.204374e-04	k: 237	n:840000
KS ci ratio: 7.246722e-03	ci left: 2.574130e-01	ci right 2.592863e-01	k: 217013	n:840000
ZMYM4   840000 perm   423 sec   (1987 perm/sec)   p_kst 2.583488e-01   p_cons 2.821429e-04   p_joint 1.407143e-03

Joint ci ratio: 1.137951e-01	ci left: 1.314770e-03	ci right 1.474542e-03	k: 1184	n:850000
Cons ci ratio: 2.529990e-01	ci left: 2.466602e-04	ci right 3.191697e-04	k: 239	n:850000
KS ci ratio: 7.204665e-03	ci left: 2.573815e-01	ci right 2.592437e-01	k: 219565	n:850000
ZMYM4   850000 perm   431 sec   (1973 perm/sec)   p_kst 2.583118e-01   p_cons 2.811765e-04   p_joint 1.392941e-03

Joint ci ratio: 1.137961e-01	ci left: 1.299481e-03	ci right 1.457396e-03	k: 1184	n:860000
Cons ci ratio: 2.514324e-01	ci left: 2.470599e-04	ci right 3.191668e-04	k: 242	n:860000
KS ci ratio: 7.161788e-03	ci left: 2.574332e-01	ci right 2.592847e-01	k: 222188	n:860000
ZMYM4   860000 perm   439 sec   (1960 perm/sec)   p_kst 2.583581e-01   p_cons 2.813953e-04   p_joint 1.376744e-03

Joint ci ratio: 1.140381e-01	ci left: 1.278960e-03	ci right 1.434735e-03	k: 1179	n:870000
Cons ci ratio: 2.514329e-01	ci left: 2.442201e-04	ci right 3.154983e-04	k: 242	n:870000
KS ci ratio: 7.120159e-03	ci left: 2.574574e-01	ci right 2.592982e-01	k: 224788	n:870000
ZMYM4   870000 perm   447 sec   (1947 perm/sec)   p_kst 2.583770e-01   p_cons 2.781609e-04   p_joint 1.355172e-03

Joint ci ratio: 1.132252e-01	ci left: 1.283196e-03	ci right 1.438298e-03	k: 1196	n:880000
Cons ci ratio: 2.483846e-01	ci left: 2.478362e-04	ci right 3.191573e-04	k: 248	n:880000
KS ci ratio: 7.078325e-03	ci left: 2.575310e-01	ci right 2.593615e-01	k: 227432	n:880000
ZMYM4   880000 perm   455 sec   (1934 perm/sec)   p_kst 2.584455e-01   p_cons 2.818182e-04   p_joint 1.359091e-03

Joint ci ratio: 1.136547e-01	ci left: 1.258952e-03	ci right 1.411739e-03	k: 1187	n:890000
Cons ci ratio: 2.478876e-01	ci left: 2.461052e-04	ci right 3.167647e-04	k: 249	n:890000
KS ci ratio: 7.038704e-03	ci left: 2.575222e-01	ci right 2.593423e-01	k: 230004	n:890000
ZMYM4   890000 perm   463 sec   (1921 perm/sec)   p_kst 2.584315e-01   p_cons 2.797753e-04   p_joint 1.333708e-03

Joint ci ratio: 1.137035e-01	ci left: 1.243883e-03	ci right 1.394911e-03	k: 1186	n:900000
Cons ci ratio: 2.464135e-01	ci left: 2.464976e-04	ci right 3.167844e-04	k: 252	n:900000
KS ci ratio: 6.999558e-03	ci left: 2.575236e-01	ci right 2.593335e-01	k: 232585	n:900000
ZMYM4   900000 perm   471 sec   (1909 perm/sec)   p_kst 2.584278e-01   p_cons 2.800000e-04   p_joint 1.317778e-03

Joint ci ratio: 1.132752e-01	ci left: 1.239823e-03	ci right 1.389753e-03	k: 1195	n:910000
Cons ci ratio: 2.459282e-01	ci left: 2.448199e-04	ci right 3.144699e-04	k: 253	n:910000
KS ci ratio: 6.961777e-03	ci left: 2.574854e-01	ci right 2.592853e-01	k: 235130	n:910000
ZMYM4   910000 perm   480 sec   (1897 perm/sec)   p_kst 2.583846e-01   p_cons 2.780220e-04   p_joint 1.313187e-03

Joint ci ratio: 1.121548e-01	ci left: 1.251699e-03	ci right 1.401469e-03	k: 1219	n:920000
Cons ci ratio: 2.449658e-01	ci left: 2.441990e-04	ci right 3.133591e-04	k: 255	n:920000
KS ci ratio: 6.923972e-03	ci left: 2.574829e-01	ci right 2.592730e-01	k: 237707	n:920000
ZMYM4   920000 perm   488 sec   (1884 perm/sec)   p_kst 2.583772e-01   p_cons 2.771739e-04   p_joint 1.325000e-03

Joint ci ratio: 1.115167e-01	ci left: 1.252873e-03	ci right 1.401874e-03	k: 1233	n:930000
Cons ci ratio: 2.440146e-01	ci left: 2.435920e-04	ci right 3.122717e-04	k: 257	n:930000
KS ci ratio: 6.886816e-03	ci left: 2.574783e-01	ci right 2.592587e-01	k: 240282	n:930000
ZMYM4   930000 perm   497 sec   (1873 perm/sec)   p_kst 2.583677e-01   p_cons 2.763441e-04   p_joint 1.325806e-03

Joint ci ratio: 1.112470e-01	ci left: 1.245749e-03	ci right 1.393522e-03	k: 1239	n:940000
Cons ci ratio: 2.426081e-01	ci left: 2.439975e-04	ci right 3.123353e-04	k: 260	n:940000
KS ci ratio: 6.849605e-03	ci left: 2.575100e-01	ci right 2.592809e-01	k: 242891	n:940000
ZMYM4   940000 perm   505 sec   (1860 perm/sec)   p_kst 2.583947e-01   p_cons 2.765957e-04   p_joint 1.318085e-03

Joint ci ratio: 1.007646e-01	ci left: 1.510364e-03	ci right 1.671647e-03	k: 1510	n:950000
Cons ci ratio: 2.394182e-01	ci left: 2.483527e-04	ci right 3.168600e-04	k: 267	n:950000
KS ci ratio: 6.813551e-03	ci left: 2.575094e-01	ci right 2.592710e-01	k: 245470	n:950000
ZMYM4   950000 perm   514 sec   (1849 perm/sec)   p_kst 2.583895e-01   p_cons 2.810526e-04   p_joint 1.589474e-03

Joint ci ratio: 1.010673e-01	ci left: 1.485492e-03	ci right 1.644623e-03	k: 1501	n:960000
Cons ci ratio: 2.389730e-01	ci left: 2.467449e-04	ci right 3.146634e-04	k: 268	n:960000
KS ci ratio: 6.776607e-03	ci left: 2.575911e-01	ci right 2.593437e-01	k: 248128	n:960000
ZMYM4   960000 perm   522 sec   (1838 perm/sec)   p_kst 2.584667e-01   p_cons 2.791667e-04   p_joint 1.563542e-03

Joint ci ratio: 1.076985e-01	ci left: 1.290447e-03	ci right 1.438329e-03	k: 1322	n:970000
Cons ci ratio: 2.013174e-01	ci left: 3.513981e-04	ci right 4.310164e-04	k: 378	n:970000
KS ci ratio: 6.740365e-03	ci left: 2.576650e-01	ci right 2.594086e-01	k: 250780	n:970000
ZMYM4   970000 perm   531 sec   (1826 perm/sec)   p_kst 2.585361e-01   p_cons 3.896907e-04   p_joint 1.362887e-03

Joint ci ratio: 1.088589e-01	ci left: 1.249480e-03	ci right 1.394309e-03	k: 1294	n:980000
Cons ci ratio: 2.007885e-01	ci left: 3.497504e-04	ci right 4.287618e-04	k: 380	n:980000
KS ci ratio: 6.705251e-03	ci left: 2.577058e-01	ci right 2.594406e-01	k: 253401	n:980000
ZMYM4   980000 perm   540 sec   (1815 perm/sec)   p_kst 2.585724e-01   p_cons 3.877551e-04   p_joint 1.320408e-03

Joint ci ratio: 1.095822e-01	ci left: 1.220155e-03	ci right 1.362586e-03	k: 1277	n:990000
Cons ci ratio: 2.002638e-01	ci left: 3.481363e-04	ci right 4.265524e-04	k: 382	n:990000
KS ci ratio: 6.671823e-03	ci left: 2.576802e-01	ci right 2.594061e-01	k: 255957	n:990000
ZMYM4   990000 perm   549 sec   (1804 perm/sec)   p_kst 2.585424e-01   p_cons 3.858586e-04   p_joint 1.289899e-03

Joint ci ratio: 1.092411e-01	ci left: 1.215735e-03	ci right 1.357179e-03	k: 1285	n:1000000
Cons ci ratio: 1.994841e-01	ci left: 3.475048e-04	ci right 4.254368e-04	k: 385	n:1000000
KS ci ratio: 6.637349e-03	ci left: 2.577440e-01	ci right 2.594614e-01	k: 258602	n:1000000
ZMYM4   1000000 perm   558 sec   (1794 perm/sec)   p_kst 2.586020e-01   p_cons 3.850000e-04   p_joint 1.285000e-03

Joint ci ratio: 1.088190e-01	ci left: 1.213329e-03	ci right 1.353913e-03	k: 1295	n:1010000
Cons ci ratio: 1.989695e-01	ci left: 3.459456e-04	ci right 4.233034e-04	k: 387	n:1010000
KS ci ratio: 6.604563e-03	ci left: 2.577393e-01	ci right 2.594482e-01	k: 261179	n:1010000
ZMYM4   1010000 perm   566 sec   (1783 perm/sec)   p_kst 2.585931e-01   p_cons 3.831683e-04   p_joint 1.282178e-03

Joint ci ratio: 1.086101e-01	ci left: 1.206202e-03	ci right 1.345675e-03	k: 1300	n:1020000
Cons ci ratio: 1.987139e-01	ci left: 3.434855e-04	ci right 4.201826e-04	k: 388	n:1020000
KS ci ratio: 6.572292e-03	ci left: 2.577328e-01	ci right 2.594333e-01	k: 263754	n:1020000
ZMYM4   1020000 perm   576 sec   (1772 perm/sec)   p_kst 2.585824e-01   p_cons 3.803922e-04   p_joint 1.274510e-03

Joint ci ratio: 1.088624e-01	ci left: 1.188824e-03	ci right 1.326627e-03	k: 1294	n:1030000
Cons ci ratio: 1.979521e-01	ci left: 3.429186e-04	ci right 4.191603e-04	k: 391	n:1030000
KS ci ratio: 6.539677e-03	ci left: 2.577740e-01	ci right 2.594662e-01	k: 266378	n:1030000
ZMYM4   1030000 perm   585 sec   (1761 perm/sec)   p_kst 2.586194e-01   p_cons 3.796117e-04   p_joint 1.256311e-03

Joint ci ratio: 1.114342e-01	ci left: 1.122222e-03	ci right 1.255581e-03	k: 1235	n:1040000
Cons ci ratio: 1.974492e-01	ci left: 3.414492e-04	ci right 4.171481e-04	k: 393	n:1040000
KS ci ratio: 6.508278e-03	ci left: 2.577711e-01	ci right 2.594552e-01	k: 268957	n:1040000
ZMYM4   1040000 perm   594 sec   (1751 perm/sec)   p_kst 2.586125e-01   p_cons 3.778846e-04   p_joint 1.187500e-03

Joint ci ratio: 1.107196e-01	ci left: 1.126350e-03	ci right 1.259284e-03	k: 1251	n:1050000
Cons ci ratio: 1.957180e-01	ci left: 3.445359e-04	ci right 4.201695e-04	k: 400	n:1050000
KS ci ratio: 6.478083e-03	ci left: 2.577237e-01	ci right 2.593996e-01	k: 271489	n:1050000
ZMYM4   1050000 perm   603 sec   (1741 perm/sec)   p_kst 2.585610e-01   p_cons 3.809524e-04   p_joint 1.191429e-03

Joint ci ratio: 1.112104e-01	ci left: 1.105634e-03	ci right 1.236739e-03	k: 1240	n:1060000
Cons ci ratio: 1.947491e-01	ci left: 3.448747e-04	ci right 4.201635e-04	k: 404	n:1060000
KS ci ratio: 6.447654e-03	ci left: 2.577157e-01	ci right 2.593837e-01	k: 274062	n:1060000
ZMYM4   1060000 perm   613 sec   (1730 perm/sec)   p_kst 2.585491e-01   p_cons 3.811321e-04   p_joint 1.169811e-03

Joint ci ratio: 1.107209e-01	ci left: 1.105296e-03	ci right 1.235747e-03	k: 1251	n:1070000
Cons ci ratio: 1.937944e-01	ci left: 3.452081e-04	ci right 4.201566e-04	k: 408	n:1070000
KS ci ratio: 6.417368e-03	ci left: 2.577248e-01	ci right 2.593849e-01	k: 276653	n:1070000
ZMYM4   1070000 perm   622 sec   (1720 perm/sec)   p_kst 2.585542e-01   p_cons 3.813084e-04   p_joint 1.169159e-03

Joint ci ratio: 1.101504e-01	ci left: 1.106766e-03	ci right 1.236674e-03	k: 1264	n:1080000
Cons ci ratio: 1.926205e-01	ci left: 3.464174e-04	ci right 4.211195e-04	k: 413	n:1080000
KS ci ratio: 6.387536e-03	ci left: 2.577318e-01	ci right 2.593843e-01	k: 279242	n:1080000
ZMYM4   1080000 perm   631 sec   (1711 perm/sec)   p_kst 2.585574e-01   p_cons 3.824074e-04   p_joint 1.170370e-03

Joint ci ratio: 1.099771e-01	ci left: 1.100181e-03	ci right 1.229099e-03	k: 1268	n:1090000
Cons ci ratio: 1.914676e-01	ci left: 3.476059e-04	ci right 4.220635e-04	k: 418	n:1090000
KS ci ratio: 6.359242e-03	ci left: 2.576709e-01	ci right 2.593157e-01	k: 281757	n:1090000
ZMYM4   1090000 perm   641 sec   (1701 perm/sec)   p_kst 2.584927e-01   p_cons 3.834862e-04   p_joint 1.163303e-03

Joint ci ratio: 1.097614e-01	ci left: 1.094599e-03	ci right 1.222596e-03	k: 1273	n:1100000
Cons ci ratio: 1.912398e-01	ci left: 3.453114e-04	ci right 4.191792e-04	k: 419	n:1100000
KS ci ratio: 6.331095e-03	ci left: 2.576248e-01	ci right 2.592619e-01	k: 284287	n:1100000
ZMYM4   1100000 perm   650 sec   (1691 perm/sec)   p_kst 2.584427e-01   p_cons 3.809091e-04   p_joint 1.157273e-03

Joint ci ratio: 1.092480e-01	ci left: 1.095253e-03	ci right 1.222688e-03	k: 1285	n:1110000
Cons ci ratio: 1.898881e-01	ci left: 3.473480e-04	ci right 4.210657e-04	k: 425	n:1110000
KS ci ratio: 6.300875e-03	ci left: 2.577280e-01	ci right 2.593579e-01	k: 286982	n:1110000
ZMYM4   1110000 perm   660 sec   (1682 perm/sec)   p_kst 2.585423e-01   p_cons 3.828829e-04   p_joint 1.157658e-03

Joint ci ratio: 1.087838e-01	ci left: 1.095027e-03	ci right 1.221861e-03	k: 1296	n:1120000
Cons ci ratio: 1.892230e-01	ci left: 3.467982e-04	ci right 4.201117e-04	k: 428	n:1120000
KS ci ratio: 6.272484e-03	ci left: 2.577438e-01	ci right 2.593664e-01	k: 289581	n:1120000
ZMYM4   1120000 perm   670 sec   (1672 perm/sec)   p_kst 2.585545e-01   p_cons 3.821429e-04   p_joint 1.157143e-03

Joint ci ratio: 1.084085e-01	ci left: 1.093085e-03	ci right 1.219229e-03	k: 1305	n:1130000
Cons ci ratio: 1.890031e-01	ci left: 3.445722e-04	ci right 4.173208e-04	k: 429	n:1130000
KS ci ratio: 6.244835e-03	ci left: 2.577372e-01	ci right 2.593526e-01	k: 292155	n:1130000
ZMYM4   1130000 perm   680 sec   (1663 perm/sec)   p_kst 2.585442e-01   p_cons 3.796460e-04   p_joint 1.154867e-03

Joint ci ratio: 1.125856e-01	ci left: 1.002463e-03	ci right 1.122902e-03	k: 1210	n:1140000
Cons ci ratio: 1.879137e-01	ci left: 3.457287e-04	ci right 4.182527e-04	k: 434	n:1140000
KS ci ratio: 6.216965e-03	ci left: 2.577666e-01	ci right 2.593750e-01	k: 294770	n:1140000
ZMYM4   1140000 perm   690 sec   (1653 perm/sec)   p_kst 2.585702e-01   p_cons 3.807018e-04   p_joint 1.061404e-03

Joint ci ratio: 1.118489e-01	ci left: 1.007269e-03	ci right 1.127441e-03	k: 1226	n:1150000
Cons ci ratio: 1.864195e-01	ci left: 3.485241e-04	ci right 4.209875e-04	k: 441	n:1150000
KS ci ratio: 6.189759e-03	ci left: 2.577773e-01	ci right 2.593787e-01	k: 297364	n:1150000
ZMYM4   1150000 perm   700 sec   (1643 perm/sec)   p_kst 2.585774e-01   p_cons 3.834783e-04   p_joint 1.066087e-03

Joint ci ratio: 1.112610e-01	ci left: 1.009479e-03	ci right 1.129241e-03	k: 1239	n:1160000
Cons ci ratio: 1.855816e-01	ci left: 3.488074e-04	ci right 4.209669e-04	k: 445	n:1160000
KS ci ratio: 6.163697e-03	ci left: 2.577388e-01	ci right 2.593331e-01	k: 299901	n:1160000
ZMYM4   1160000 perm   710 sec   (1634 perm/sec)   p_kst 2.585353e-01   p_cons 3.836207e-04   p_joint 1.068103e-03

Joint ci ratio: 1.107264e-01	ci left: 1.010823e-03	ci right 1.130130e-03	k: 1251	n:1170000
Cons ci ratio: 1.843456e-01	ci left: 3.507169e-04	ci right 4.227343e-04	k: 451	n:1170000
KS ci ratio: 6.137551e-03	ci left: 2.577265e-01	ci right 2.593140e-01	k: 302468	n:1170000
ZMYM4   1170000 perm   720 sec   (1625 perm/sec)   p_kst 2.585197e-01   p_cons 3.854701e-04   p_joint 1.069231e-03

Joint ci ratio: 1.103745e-01	ci left: 1.008849e-03	ci right 1.127520e-03	k: 1259	n:1180000
Cons ci ratio: 1.831339e-01	ci left: 3.525956e-04	ci right 4.244701e-04	k: 457	n:1180000
KS ci ratio: 6.110898e-03	ci left: 2.577670e-01	ci right 2.593478e-01	k: 305097	n:1180000
ZMYM4   1180000 perm   730 sec   (1617 perm/sec)   p_kst 2.585568e-01   p_cons 3.872881e-04   p_joint 1.066949e-03

Joint ci ratio: 1.107717e-01	ci left: 9.930170e-04	ci right 1.110274e-03	k: 1250	n:1190000
Cons ci ratio: 1.823394e-01	ci left: 3.528402e-04	ci right 4.244181e-04	k: 461	n:1190000
KS ci ratio: 6.084175e-03	ci left: 2.578328e-01	ci right 2.594071e-01	k: 307757	n:1190000
ZMYM4   1190000 perm   740 sec   (1608 perm/sec)   p_kst 2.586193e-01   p_cons 3.873950e-04   p_joint 1.050420e-03

Joint ci ratio: 1.125421e-01	ci left: 9.531483e-04	ci right 1.067615e-03	k: 1211	n:1200000
Cons ci ratio: 1.821426e-01	ci left: 3.506952e-04	ci right 4.217526e-04	k: 462	n:1200000
KS ci ratio: 6.059340e-03	ci left: 2.578001e-01	ci right 2.593677e-01	k: 310300	n:1200000
ZMYM4   1200000 perm   750 sec   (1599 perm/sec)   p_kst 2.585833e-01   p_cons 3.850000e-04   p_joint 1.009167e-03

Joint ci ratio: 1.124034e-01	ci left: 9.476805e-04	ci right 1.061341e-03	k: 1214	n:1210000
Cons ci ratio: 1.817506e-01	ci left: 3.493745e-04	ci right 4.199952e-04	k: 464	n:1210000
KS ci ratio: 6.034872e-03	ci left: 2.577638e-01	ci right 2.593249e-01	k: 312838	n:1210000
ZMYM4   1210000 perm   761 sec   (1590 perm/sec)   p_kst 2.585438e-01   p_cons 3.834711e-04   p_joint 1.003306e-03

Joint ci ratio: 1.124966e-01	ci left: 9.383192e-04	ci right 1.050957e-03	k: 1212	n:1220000
Cons ci ratio: 1.817509e-01	ci left: 3.465107e-04	ci right 4.165526e-04	k: 464	n:1220000
KS ci ratio: 6.010094e-03	ci left: 2.577667e-01	ci right 2.593213e-01	k: 315423	n:1220000
ZMYM4   1220000 perm   771 sec   (1581 perm/sec)   p_kst 2.585434e-01   p_cons 3.803279e-04   p_joint 9.934426e-04

Joint ci ratio: 9.999091e-02	ci left: 1.185554e-03	ci right 1.311122e-03	k: 1534	n:1230000
Cons ci ratio: 1.802071e-01	ci left: 3.499030e-04	ci right 4.199643e-04	k: 472	n:1230000
KS ci ratio: 5.984819e-03	ci left: 2.578207e-01	ci right 2.593691e-01	k: 318071	n:1230000
ZMYM4   1230000 perm   782 sec   (1573 perm/sec)   p_kst 2.585943e-01   p_cons 3.837398e-04   p_joint 1.247154e-03

Joint ci ratio: 9.963461e-02	ci left: 1.184642e-03	ci right 1.309641e-03	k: 1545	n:1240000
Cons ci ratio: 1.802073e-01	ci left: 3.470812e-04	ci right 4.165776e-04	k: 472	n:1240000
KS ci ratio: 5.960788e-03	ci left: 2.578142e-01	ci right 2.593563e-01	k: 320645	n:1240000
ZMYM4   1240000 perm   792 sec   (1565 perm/sec)   p_kst 2.585847e-01   p_cons 3.806452e-04   p_joint 1.245968e-03

Joint ci ratio: 9.918647e-02	ci left: 1.186087e-03	ci right 1.310642e-03	k: 1559	n:1250000
Cons ci ratio: 1.794501e-01	ci left: 3.473605e-04	ci right 4.165889e-04	k: 476	n:1250000
KS ci ratio: 5.937465e-03	ci left: 2.577806e-01	ci right 2.593165e-01	k: 323185	n:1250000
ZMYM4   1250000 perm   803 sec   (1557 perm/sec)   p_kst 2.585480e-01   p_cons 3.808000e-04   p_joint 1.247200e-03

Joint ci ratio: 9.909161e-02	ci left: 1.178995e-03	ci right 1.302681e-03	k: 1562	n:1260000
Cons ci ratio: 1.788885e-01	ci left: 3.468778e-04	ci right 4.157702e-04	k: 479	n:1260000
KS ci ratio: 5.913801e-03	ci left: 2.577872e-01	ci right 2.593170e-01	k: 325775	n:1260000
ZMYM4   1260000 perm   814 sec   (1549 perm/sec)   p_kst 2.585516e-01   p_cons 3.801587e-04   p_joint 1.239683e-03

Joint ci ratio: 9.890221e-02	ci left: 1.174319e-03	ci right 1.297265e-03	k: 1568	n:1270000
Cons ci ratio: 1.783322e-01	ci left: 3.464031e-04	ci right 4.149642e-04	k: 482	n:1270000
KS ci ratio: 5.890430e-03	ci left: 2.577930e-01	ci right 2.593168e-01	k: 328364	n:1270000
ZMYM4   1270000 perm   824 sec   (1541 perm/sec)   p_kst 2.585543e-01   p_cons 3.795276e-04   p_joint 1.234646e-03

Joint ci ratio: 9.906085e-02	ci left: 1.161335e-03	ci right 1.283128e-03	k: 1563	n:1280000
Cons ci ratio: 1.774162e-01	ci left: 3.474292e-04	ci right 4.158022e-04	k: 487	n:1280000
KS ci ratio: 5.868004e-03	ci left: 2.577550e-01	ci right 2.592727e-01	k: 330897	n:1280000
ZMYM4   1280000 perm   835 sec   (1533 perm/sec)   p_kst 2.585133e-01   p_cons 3.804688e-04   p_joint 1.221094e-03

Joint ci ratio: 9.858909e-02	ci left: 1.163673e-03	ci right 1.285096e-03	k: 1578	n:1290000
Cons ci ratio: 1.772349e-01	ci left: 3.454767e-04	ci right 4.133886e-04	k: 488	n:1290000
KS ci ratio: 5.846695e-03	ci left: 2.576610e-01	ci right 2.591726e-01	k: 333357	n:1290000
ZMYM4   1290000 perm   846 sec   (1525 perm/sec)   p_kst 2.584163e-01   p_cons 3.782946e-04   p_joint 1.223256e-03

Joint ci ratio: 9.806244e-02	ci left: 1.167477e-03	ci right 1.288609e-03	k: 1595	n:1300000
Cons ci ratio: 1.763356e-01	ci left: 3.464951e-04	ci right 4.142248e-04	k: 493	n:1300000
KS ci ratio: 5.823944e-03	ci left: 2.576784e-01	ci right 2.591842e-01	k: 335960	n:1300000
ZMYM4   1300000 perm   857 sec   (1517 perm/sec)   p_kst 2.584308e-01   p_cons 3.792308e-04   p_joint 1.226923e-03

Joint ci ratio: 9.760474e-02	ci left: 1.169735e-03	ci right 1.290503e-03	k: 1610	n:1310000
Cons ci ratio: 1.763358e-01	ci left: 3.438501e-04	ci right 4.110628e-04	k: 493	n:1310000
KS ci ratio: 5.802127e-03	ci left: 2.576513e-01	ci right 2.591513e-01	k: 338505	n:1310000
ZMYM4   1310000 perm   868 sec   (1509 perm/sec)   p_kst 2.584008e-01   p_cons 3.763359e-04   p_joint 1.229008e-03

Joint ci ratio: 9.715339e-02	ci left: 1.171961e-03	ci right 1.292366e-03	k: 1625	n:1320000
Cons ci ratio: 1.754501e-01	ci left: 3.448663e-04	ci right 4.119032e-04	k: 498	n:1320000
KS ci ratio: 5.779868e-03	ci left: 2.576700e-01	ci right 2.591644e-01	k: 341110	n:1320000
ZMYM4   1320000 perm   879 sec   (1502 perm/sec)   p_kst 2.584167e-01   p_cons 3.772727e-04   p_joint 1.231061e-03

Joint ci ratio: 9.700463e-02	ci left: 1.166817e-03	ci right 1.286500e-03	k: 1630	n:1330000
Cons ci ratio: 1.749251e-01	ci left: 3.444301e-04	ci right 4.111606e-04	k: 501	n:1330000
KS ci ratio: 5.758145e-03	ci left: 2.576697e-01	ci right 2.591584e-01	k: 343690	n:1330000
ZMYM4   1330000 perm   890 sec   (1495 perm/sec)   p_kst 2.584135e-01   p_cons 3.766917e-04   p_joint 1.225564e-03

Joint ci ratio: 9.721417e-02	ci left: 1.153012e-03	ci right 1.271549e-03	k: 1623	n:1340000
Cons ci ratio: 1.744048e-01	ci left: 3.440006e-04	ci right 4.104288e-04	k: 504	n:1340000
KS ci ratio: 5.735929e-03	ci left: 2.577186e-01	ci right 2.592018e-01	k: 346336	n:1340000
ZMYM4   1340000 perm   901 sec   (1487 perm/sec)   p_kst 2.584597e-01   p_cons 3.761194e-04   p_joint 1.211194e-03

Joint ci ratio: 9.739490e-02	ci left: 1.140134e-03	ci right 1.257578e-03	k: 1617	n:1350000
Cons ci ratio: 1.733777e-01	ci left: 3.457035e-04	ci right 4.120263e-04	k: 510	n:1350000
KS ci ratio: 5.714674e-03	ci left: 2.577194e-01	ci right 2.591972e-01	k: 348918	n:1350000
ZMYM4   1350000 perm   912 sec   (1480 perm/sec)   p_kst 2.584578e-01   p_cons 3.777778e-04   p_joint 1.197778e-03

Joint ci ratio: 9.706555e-02	ci left: 1.139642e-03	ci right 1.256616e-03	k: 1628	n:1360000
Cons ci ratio: 1.727031e-01	ci left: 3.459754e-04	ci right 4.120651e-04	k: 514	n:1360000
KS ci ratio: 5.693085e-03	ci left: 2.577585e-01	ci right 2.592308e-01	k: 351552	n:1360000
ZMYM4   1360000 perm   923 sec   (1473 perm/sec)   p_kst 2.584941e-01   p_cons 3.779412e-04   p_joint 1.197059e-03

Joint ci ratio: 9.751651e-02	ci left: 1.120641e-03	ci right 1.236229e-03	k: 1613	n:1370000
Cons ci ratio: 1.720362e-01	ci left: 3.462437e-04	ci right 4.121029e-04	k: 518	n:1370000
KS ci ratio: 5.672842e-03	ci left: 2.577225e-01	ci right 2.591894e-01	k: 354084	n:1370000
ZMYM4   1370000 perm   935 sec   (1466 perm/sec)   p_kst 2.584555e-01   p_cons 3.781022e-04   p_joint 1.177372e-03

Joint ci ratio: 9.694730e-02	ci left: 1.125954e-03	ci right 1.241373e-03	k: 1632	n:1380000
Cons ci ratio: 1.717058e-01	ci left: 3.451217e-04	ci right 4.106282e-04	k: 520	n:1380000
KS ci ratio: 5.653186e-03	ci left: 2.576618e-01	ci right 2.591233e-01	k: 356581	n:1380000
ZMYM4   1380000 perm   946 sec   (1458 perm/sec)   p_kst 2.583920e-01   p_cons 3.768116e-04   p_joint 1.182609e-03

Joint ci ratio: 1.032475e-01	ci left: 9.824731e-04	ci right 1.090127e-03	k: 1439	n:1390000
Cons ci ratio: 1.713773e-01	ci left: 3.440158e-04	ci right 4.091746e-04	k: 522	n:1390000
KS ci ratio: 5.631915e-03	ci left: 2.577256e-01	ci right 2.591819e-01	k: 359250	n:1390000
ZMYM4   1390000 perm   958 sec   (1451 perm/sec)   p_kst 2.584532e-01   p_cons 3.755396e-04   p_joint 1.035252e-03

Joint ci ratio: 1.030332e-01	ci left: 9.796305e-04	ci right 1.086737e-03	k: 1445	n:1400000
Cons ci ratio: 1.708879e-01	ci left: 3.436096e-04	ci right 4.084865e-04	k: 525	n:1400000
KS ci ratio: 5.611802e-03	ci left: 2.577257e-01	ci right 2.591767e-01	k: 361831	n:1400000
ZMYM4   1400000 perm   969 sec   (1444 perm/sec)   p_kst 2.584507e-01   p_cons 3.750000e-04   p_joint 1.032143e-03

Joint ci ratio: 1.027849e-01	ci left: 9.775195e-04	ci right 1.084122e-03	k: 1452	n:1410000
Cons ci ratio: 1.705641e-01	ci left: 3.425305e-04	ci right 4.070685e-04	k: 527	n:1410000
KS ci ratio: 5.591541e-03	ci left: 2.577506e-01	ci right 2.591965e-01	k: 364447	n:1410000
ZMYM4   1410000 perm   981 sec   (1437 perm/sec)   p_kst 2.584730e-01   p_cons 3.737589e-04   p_joint 1.029787e-03

Joint ci ratio: 1.023630e-01	ci left: 9.788695e-04	ci right 1.085154e-03	k: 1464	n:1420000
Cons ci ratio: 1.697621e-01	ci left: 3.434895e-04	ci right 4.078727e-04	k: 532	n:1420000
KS ci ratio: 5.571395e-03	ci left: 2.577822e-01	ci right 2.592231e-01	k: 367073	n:1420000
ZMYM4   1420000 perm   993 sec   (1430 perm/sec)   p_kst 2.585021e-01   p_cons 3.746479e-04   p_joint 1.030986e-03

Joint ci ratio: 1.020847e-01	ci left: 9.774756e-04	ci right 1.083303e-03	k: 1472	n:1430000
Cons ci ratio: 1.691287e-01	ci left: 3.437661e-04	ci right 4.079362e-04	k: 536	n:1430000
KS ci ratio: 5.552742e-03	ci left: 2.577253e-01	ci right 2.591610e-01	k: 369573	n:1430000
ZMYM4   1430000 perm   1005 sec   (1423 perm/sec)   p_kst 2.584427e-01   p_cons 3.748252e-04   p_joint 1.029371e-03

Joint ci ratio: 1.020504e-01	ci left: 9.713642e-04	ci right 1.076493e-03	k: 1473	n:1440000
Cons ci ratio: 1.685022e-01	ci left: 3.440392e-04	ci right 4.079983e-04	k: 540	n:1440000
KS ci ratio: 5.533061e-03	ci left: 2.577531e-01	ci right 2.591839e-01	k: 372194	n:1440000
ZMYM4   1440000 perm   1018 sec   (1415 perm/sec)   p_kst 2.584681e-01   p_cons 3.750000e-04   p_joint 1.022917e-03

Joint ci ratio: 1.029283e-01	ci left: 9.478651e-04	ci right 1.051386e-03	k: 1448	n:1450000
Cons ci ratio: 1.681917e-01	ci left: 3.429877e-04	ci right 4.066219e-04	k: 542	n:1450000
KS ci ratio: 5.513410e-03	ci left: 2.577930e-01	ci right 2.592190e-01	k: 374833	n:1450000
ZMYM4   1450000 perm   1030 sec   (1408 perm/sec)   p_kst 2.585055e-01   p_cons 3.737931e-04   p_joint 9.986207e-04

Joint ci ratio: 1.025046e-01	ci left: 9.493809e-04	ci right 1.052615e-03	k: 1460	n:1460000
Cons ci ratio: 1.678830e-01	ci left: 3.419507e-04	ci right 4.052643e-04	k: 544	n:1460000
KS ci ratio: 5.494732e-03	ci left: 2.577790e-01	ci right 2.592000e-01	k: 377394	n:1460000
ZMYM4   1460000 perm   1043 sec   (1400 perm/sec)   p_kst 2.584890e-01   p_cons 3.726027e-04   p_joint 1.000000e-03

Joint ci ratio: 1.020169e-01	ci left: 9.522028e-04	ci right 1.055222e-03	k: 1474	n:1470000
Cons ci ratio: 1.675759e-01	ci left: 3.409279e-04	ci right 4.039250e-04	k: 546	n:1470000
KS ci ratio: 5.475388e-03	ci left: 2.578250e-01	ci right 2.592412e-01	k: 380043	n:1470000
ZMYM4   1470000 perm   1055 sec   (1393 perm/sec)   p_kst 2.585327e-01   p_cons 3.714286e-04   p_joint 1.002721e-03

Joint ci ratio: 1.016385e-01	ci left: 9.530122e-04	ci right 1.055713e-03	k: 1485	n:1480000
Cons ci ratio: 1.666642e-01	ci left: 3.425089e-04	ci right 4.054192e-04	k: 552	n:1480000
KS ci ratio: 5.456237e-03	ci left: 2.578711e-01	ci right 2.592826e-01	k: 382693	n:1480000
ZMYM4   1480000 perm   1067 sec   (1387 perm/sec)   p_kst 2.585764e-01   p_cons 3.729730e-04   p_joint 1.003378e-03

Joint ci ratio: 1.027877e-01	ci left: 9.250340e-04	ci right 1.025915e-03	k: 1452	n:1490000
Cons ci ratio: 1.653240e-01	ci left: 3.459996e-04	ci right 4.089892e-04	k: 561	n:1490000
KS ci ratio: 5.438465e-03	ci left: 2.578334e-01	ci right 2.592401e-01	k: 385219	n:1490000
ZMYM4   1490000 perm   1079 sec   (1380 perm/sec)   p_kst 2.585362e-01   p_cons 3.765101e-04   p_joint 9.744966e-04

Joint ci ratio: 1.023658e-01	ci left: 9.266619e-04	ci right 1.027281e-03	k: 1464	n:1500000
Cons ci ratio: 1.647387e-01	ci left: 3.462495e-04	ci right 4.090393e-04	k: 565	n:1500000
KS ci ratio: 5.420160e-03	ci left: 2.578461e-01	ci right 2.592481e-01	k: 387820	n:1500000
ZMYM4   1500000 perm   1092 sec   (1374 perm/sec)   p_kst 2.585467e-01   p_cons 3.766667e-04   p_joint 9.760000e-04

Joint ci ratio: 1.020875e-01	ci left: 9.256876e-04	ci right 1.025911e-03	k: 1472	n:1510000
Cons ci ratio: 1.643039e-01	ci left: 3.458614e-04	ci right 4.083989e-04	k: 568	n:1510000
KS ci ratio: 5.402308e-03	ci left: 2.578395e-01	ci right 2.592369e-01	k: 390392	n:1510000
ZMYM4   1510000 perm   1104 sec   (1367 perm/sec)   p_kst 2.585377e-01   p_cons 3.761589e-04   p_joint 9.748344e-04

Joint ci ratio: 1.017427e-01	ci left: 9.260088e-04	ci right 1.025908e-03	k: 1482	n:1520000
Cons ci ratio: 1.640160e-01	ci left: 3.448477e-04	ci right 4.070819e-04	k: 570	n:1520000
KS ci ratio: 5.384354e-03	ci left: 2.578528e-01	ci right 2.592455e-01	k: 392994	n:1520000
ZMYM4   1520000 perm   1118 sec   (1360 perm/sec)   p_kst 2.585487e-01   p_cons 3.750000e-04   p_joint 9.750000e-04

Joint ci ratio: 8.945183e-02	ci left: 1.197508e-03	ci right 1.310276e-03	k: 1917	n:1530000
Cons ci ratio: 1.631609e-01	ci left: 3.463548e-04	ci right 4.085031e-04	k: 576	n:1530000
KS ci ratio: 5.366377e-03	ci left: 2.578802e-01	ci right 2.592684e-01	k: 395618	n:1530000
ZMYM4   1530000 perm   1130 sec   (1354 perm/sec)   p_kst 2.585739e-01   p_cons 3.764706e-04   p_joint 1.252941e-03

Joint ci ratio: 8.910401e-02	ci left: 1.199255e-03	ci right 1.311725e-03	k: 1932	n:1540000
Cons ci ratio: 1.623190e-01	ci left: 3.478432e-04	ci right 4.099051e-04	k: 582	n:1540000
KS ci ratio: 5.349675e-03	ci left: 2.578288e-01	ci right 2.592124e-01	k: 398121	n:1540000
ZMYM4   1540000 perm   1143 sec   (1348 perm/sec)   p_kst 2.585201e-01   p_cons 3.779221e-04   p_joint 1.254545e-03

Joint ci ratio: 8.862367e-02	ci left: 1.204765e-03	ci right 1.317112e-03	k: 1953	n:1550000
Cons ci ratio: 1.616274e-01	ci left: 3.486941e-04	ci right 4.106170e-04	k: 587	n:1550000
KS ci ratio: 5.332177e-03	ci left: 2.578463e-01	ci right 2.592255e-01	k: 400730	n:1550000
ZMYM4   1550000 perm   1156 sec   (1341 perm/sec)   p_kst 2.585355e-01   p_cons 3.787097e-04   p_joint 1.260000e-03

Joint ci ratio: 8.853334e-02	ci left: 1.199549e-03	ci right 1.311290e-03	k: 1957	n:1560000
Cons ci ratio: 1.612167e-01	ci left: 3.483043e-04	ci right 4.099856e-04	k: 590	n:1560000
KS ci ratio: 5.315053e-03	ci left: 2.578490e-01	ci right 2.592237e-01	k: 403316	n:1560000
ZMYM4   1560000 perm   1169 sec   (1335 perm/sec)   p_kst 2.585359e-01   p_cons 3.782051e-04   p_joint 1.254487e-03

Joint ci ratio: 8.819609e-02	ci left: 1.201252e-03	ci right 1.312703e-03	k: 1972	n:1570000
Cons ci ratio: 1.602701e-01	ci left: 3.503651e-04	ci right 4.120120e-04	k: 597	n:1570000
KS ci ratio: 5.297971e-03	ci left: 2.578605e-01	ci right 2.592309e-01	k: 405916	n:1570000
ZMYM4   1570000 perm   1182 sec   (1328 perm/sec)   p_kst 2.585452e-01   p_cons 3.802548e-04   p_joint 1.256051e-03

Joint ci ratio: 8.786266e-02	ci left: 1.202934e-03	ci right 1.314097e-03	k: 1987	n:1580000
Cons ci ratio: 1.596042e-01	ci left: 3.511855e-04	ci right 4.126954e-04	k: 602	n:1580000
KS ci ratio: 5.281348e-03	ci left: 2.578503e-01	ci right 2.592164e-01	k: 408482	n:1580000
ZMYM4   1580000 perm   1195 sec   (1322 perm/sec)   p_kst 2.585329e-01   p_cons 3.810127e-04   p_joint 1.257595e-03

Joint ci ratio: 8.762063e-02	ci left: 1.202135e-03	ci right 1.312902e-03	k: 1998	n:1590000
Cons ci ratio: 1.593403e-01	ci left: 3.501844e-04	ci right 4.114078e-04	k: 604	n:1590000
KS ci ratio: 5.265209e-03	ci left: 2.578165e-01	ci right 2.591781e-01	k: 411010	n:1590000
ZMYM4   1590000 perm   1208 sec   (1317 perm/sec)   p_kst 2.584969e-01   p_cons 3.798742e-04   p_joint 1.256604e-03

Joint ci ratio: 8.740236e-02	ci left: 1.200734e-03	ci right 1.311084e-03	k: 2008	n:1600000
Cons ci ratio: 1.588161e-01	ci left: 3.503963e-04	ci right 4.114360e-04	k: 608	n:1600000
KS ci ratio: 5.248344e-03	ci left: 2.578467e-01	ci right 2.592042e-01	k: 413640	n:1600000
ZMYM4   1600000 perm   1221 sec   (1310 perm/sec)   p_kst 2.585250e-01   p_cons 3.800000e-04   p_joint 1.255000e-03

Joint ci ratio: 8.714250e-02	ci left: 1.200567e-03	ci right 1.310556e-03	k: 2020	n:1610000
Cons ci ratio: 1.582971e-01	ci left: 3.506058e-04	ci right 4.114634e-04	k: 612	n:1610000
KS ci ratio: 5.231971e-03	ci left: 2.578524e-01	ci right 2.592056e-01	k: 416231	n:1610000
ZMYM4   1610000 perm   1234 sec   (1305 perm/sec)   p_kst 2.585286e-01   p_cons 3.801242e-04   p_joint 1.254658e-03

Joint ci ratio: 9.260178e-02	ci left: 1.053762e-03	ci right 1.156677e-03	k: 1789	n:1620000
Cons ci ratio: 1.579112e-01	ci left: 3.502201e-04	ci right 4.108486e-04	k: 615	n:1620000
KS ci ratio: 5.215817e-03	ci left: 2.578531e-01	ci right 2.592021e-01	k: 418814	n:1620000
ZMYM4   1620000 perm   1247 sec   (1299 perm/sec)   p_kst 2.585272e-01   p_cons 3.796296e-04   p_joint 1.104321e-03

Joint ci ratio: 9.226729e-02	ci left: 1.055088e-03	ci right 1.157741e-03	k: 1802	n:1630000
Cons ci ratio: 1.575281e-01	ci left: 3.498394e-04	ci right 4.102411e-04	k: 618	n:1630000
KS ci ratio: 5.200028e-03	ci left: 2.578378e-01	ci right 2.591827e-01	k: 421371	n:1630000
ZMYM4   1630000 perm   1261 sec   (1293 perm/sec)   p_kst 2.585098e-01   p_cons 3.791411e-04   p_joint 1.105521e-03

Joint ci ratio: 8.143248e-02	ci left: 1.353507e-03	ci right 1.468997e-03	k: 2313	n:1640000
Cons ci ratio: 1.565197e-01	ci left: 3.523926e-04	ci right 4.128092e-04	k: 626	n:1640000
KS ci ratio: 5.183962e-03	ci left: 2.578538e-01	ci right 2.591946e-01	k: 423979	n:1640000
ZMYM4   1640000 perm   1274 sec   (1287 perm/sec)   p_kst 2.585238e-01   p_cons 3.817073e-04   p_joint 1.410366e-03

Joint ci ratio: 8.340511e-02	ci left: 1.281196e-03	ci right 1.393293e-03	k: 2205	n:1650000
Cons ci ratio: 1.560228e-01	ci left: 3.525864e-04	ci right 4.128263e-04	k: 630	n:1650000
KS ci ratio: 5.167888e-03	ci left: 2.578811e-01	ci right 2.592179e-01	k: 426606	n:1650000
ZMYM4   1650000 perm   1288 sec   (1282 perm/sec)   p_kst 2.585491e-01   p_cons 3.818182e-04   p_joint 1.336364e-03

Joint ci ratio: 7.647921e-02	ci left: 1.519677e-03	ci right 1.641108e-03	k: 2622	n:1660000
Cons ci ratio: 1.554083e-01	ci left: 3.533571e-04	ci right 4.134687e-04	k: 635	n:1660000
KS ci ratio: 5.152772e-03	ci left: 2.578480e-01	ci right 2.591806e-01	k: 429133	n:1660000
ZMYM4   1660000 perm   1301 sec   (1276 perm/sec)   p_kst 2.585139e-01   p_cons 3.825301e-04   p_joint 1.579518e-03

Joint ci ratio: 7.621809e-02	ci left: 1.521150e-03	ci right 1.642265e-03	k: 2640	n:1670000
Cons ci ratio: 1.551646e-01	ci left: 3.523922e-04	ci right 4.122369e-04	k: 637	n:1670000
KS ci ratio: 5.137178e-03	ci left: 2.578606e-01	ci right 2.591893e-01	k: 431736	n:1670000
ZMYM4   1670000 perm   1314 sec   (1271 perm/sec)   p_kst 2.585246e-01   p_cons 3.814371e-04   p_joint 1.580838e-03

Joint ci ratio: 7.604561e-02	ci left: 1.519103e-03	ci right 1.639769e-03	k: 2652	n:1680000
Cons ci ratio: 1.549220e-01	ci left: 3.514389e-04	ci right 4.110198e-04	k: 639	n:1680000
KS ci ratio: 5.122385e-03	ci left: 2.578238e-01	ci right 2.591484e-01	k: 434256	n:1680000
ZMYM4   1680000 perm   1328 sec   (1265 perm/sec)   p_kst 2.584857e-01   p_cons 3.803571e-04   p_joint 1.578571e-03

Joint ci ratio: 7.587429e-02	ci left: 1.517079e-03	ci right 1.637302e-03	k: 2664	n:1690000
Cons ci ratio: 1.545603e-01	ci left: 3.510658e-04	ci right 4.104316e-04	k: 642	n:1690000
KS ci ratio: 5.107206e-03	ci left: 2.578259e-01	ci right 2.591466e-01	k: 436841	n:1690000
ZMYM4   1690000 perm   1341 sec   (1260 perm/sec)   p_kst 2.584858e-01   p_cons 3.798817e-04   p_joint 1.576331e-03

Joint ci ratio: 7.578924e-02	ci left: 1.511618e-03	ci right 1.631267e-03	k: 2670	n:1700000
Cons ci ratio: 1.539627e-01	ci left: 3.518284e-04	ci right 4.110719e-04	k: 647	n:1700000
KS ci ratio: 5.092420e-03	ci left: 2.578085e-01	ci right 2.591253e-01	k: 439393	n:1700000
ZMYM4   1700000 perm   1355 sec   (1255 perm/sec)   p_kst 2.584665e-01   p_cons 3.805882e-04   p_joint 1.570588e-03

Joint ci ratio: 7.563376e-02	ci left: 1.509089e-03	ci right 1.628282e-03	k: 2681	n:1710000
Cons ci ratio: 1.534897e-01	ci left: 3.520201e-04	ci right 4.110970e-04	k: 651	n:1710000
KS ci ratio: 5.077010e-03	ci left: 2.578480e-01	ci right 2.591610e-01	k: 442042	n:1710000
ZMYM4   1710000 perm   1369 sec   (1249 perm/sec)   p_kst 2.585041e-01   p_cons 3.807018e-04   p_joint 1.567836e-03

Joint ci ratio: 7.550733e-02	ci left: 1.505449e-03	ci right 1.624147e-03	k: 2690	n:1720000
Cons ci ratio: 1.529045e-01	ci left: 3.527690e-04	ci right 4.117252e-04	k: 656	n:1720000
KS ci ratio: 5.062683e-03	ci left: 2.578156e-01	ci right 2.591247e-01	k: 444568	n:1720000
ZMYM4   1720000 perm   1383 sec   (1244 perm/sec)   p_kst 2.584698e-01   p_cons 3.813953e-04   p_joint 1.563953e-03

Joint ci ratio: 7.150698e-02	ci left: 1.672084e-03	ci right 1.796646e-03	k: 2999	n:1730000
Cons ci ratio: 1.526724e-01	ci left: 3.518417e-04	ci right 4.105456e-04	k: 658	n:1730000
KS ci ratio: 5.048423e-03	ci left: 2.577877e-01	ci right 2.590929e-01	k: 447101	n:1730000
ZMYM4   1730000 perm   1397 sec   (1239 perm/sec)   p_kst 2.584399e-01   p_cons 3.803468e-04   p_joint 1.733526e-03

Joint ci ratio: 7.128158e-02	ci left: 1.673199e-03	ci right 1.797435e-03	k: 3018	n:1740000
Cons ci ratio: 1.523261e-01	ci left: 3.514780e-04	ci right 4.099760e-04	k: 661	n:1740000
KS ci ratio: 5.033747e-03	ci left: 2.578008e-01	ci right 2.591023e-01	k: 449705	n:1740000
ZMYM4   1740000 perm   1410 sec   (1234 perm/sec)   p_kst 2.584511e-01   p_cons 3.798851e-04   p_joint 1.734483e-03

Joint ci ratio: 7.112869e-02	ci left: 1.670934e-03	ci right 1.794725e-03	k: 3031	n:1750000
Cons ci ratio: 1.516404e-01	ci left: 3.527678e-04	ci right 4.111921e-04	k: 667	n:1750000
KS ci ratio: 5.018563e-03	ci left: 2.578623e-01	ci right 2.591602e-01	k: 452394	n:1750000
ZMYM4   1750000 perm   1424 sec   (1229 perm/sec)   p_kst 2.585109e-01   p_cons 3.811429e-04   p_joint 1.732000e-03

Joint ci ratio: 7.108208e-02	ci left: 1.663672e-03	ci right 1.786841e-03	k: 3035	n:1760000
Cons ci ratio: 1.510760e-01	ci left: 3.534967e-04	ci right 4.118042e-04	k: 672	n:1760000
KS ci ratio: 5.004004e-03	ci left: 2.578857e-01	ci right 2.591799e-01	k: 455017	n:1760000
ZMYM4   1760000 perm   1439 sec   (1223 perm/sec)   p_kst 2.585324e-01   p_cons 3.818182e-04   p_joint 1.724432e-03

Joint ci ratio: 7.134183e-02	ci left: 1.642064e-03	ci right 1.764096e-03	k: 3013	n:1770000
Cons ci ratio: 1.508521e-01	ci left: 3.525868e-04	ci right 4.106502e-04	k: 674	n:1770000
KS ci ratio: 4.989733e-03	ci left: 2.578963e-01	ci right 2.591869e-01	k: 457618	n:1770000
ZMYM4   1770000 perm   1453 sec   (1218 perm/sec)   p_kst 2.585412e-01   p_cons 3.807910e-04   p_joint 1.702260e-03

Joint ci ratio: 7.114148e-02	ci left: 1.642219e-03	ci right 1.763906e-03	k: 3030	n:1780000
Cons ci ratio: 1.504071e-01	ci left: 3.527685e-04	ci right 4.106750e-04	k: 678	n:1780000
KS ci ratio: 4.975176e-03	ci left: 2.579383e-01	ci right 2.592254e-01	k: 460275	n:1780000
ZMYM4   1780000 perm   1467 sec   (1213 perm/sec)   p_kst 2.585815e-01   p_cons 3.808989e-04   p_joint 1.702247e-03

Joint ci ratio: 7.095447e-02	ci left: 1.641825e-03	ci right 1.763149e-03	k: 3046	n:1790000
Cons ci ratio: 1.500759e-01	ci left: 3.524107e-04	ci right 4.101197e-04	k: 681	n:1790000
KS ci ratio: 4.961532e-03	ci left: 2.579190e-01	ci right 2.592024e-01	k: 462823	n:1790000
ZMYM4   1790000 perm   1482 sec   (1208 perm/sec)   p_kst 2.585603e-01   p_cons 3.804469e-04   p_joint 1.701676e-03

Joint ci ratio: 7.071114e-02	ci left: 1.644163e-03	ci right 1.765227e-03	k: 3067	n:1800000
Cons ci ratio: 1.494200e-01	ci left: 3.536613e-04	ci right 4.112994e-04	k: 687	n:1800000
KS ci ratio: 4.947671e-03	ci left: 2.579255e-01	ci right 2.592053e-01	k: 465417	n:1800000
ZMYM4   1800000 perm   1497 sec   (1203 perm/sec)   p_kst 2.585650e-01   p_cons 3.816667e-04   p_joint 1.703889e-03

Joint ci ratio: 7.045887e-02	ci left: 1.647020e-03	ci right 1.767843e-03	k: 3089	n:1810000
Cons ci ratio: 1.487726e-01	ci left: 3.548986e-04	ci right 4.124655e-04	k: 693	n:1810000
KS ci ratio: 4.933804e-03	ci left: 2.579412e-01	ci right 2.592175e-01	k: 468028	n:1810000
ZMYM4   1810000 perm   1512 sec   (1197 perm/sec)   p_kst 2.585790e-01   p_cons 3.828729e-04   p_joint 1.706630e-03

Joint ci ratio: 7.029986e-02	ci left: 1.645527e-03	ci right 1.765957e-03	k: 3103	n:1820000
Cons ci ratio: 1.484521e-01	ci left: 3.545357e-04	ci right 4.119088e-04	k: 696	n:1820000
KS ci ratio: 4.920293e-03	ci left: 2.579382e-01	ci right 2.592110e-01	k: 470605	n:1820000
ZMYM4   1820000 perm   1527 sec   (1192 perm/sec)   p_kst 2.585742e-01   p_cons 3.824176e-04   p_joint 1.704945e-03

Joint ci ratio: 7.076992e-02	ci left: 1.614525e-03	ci right 1.733509e-03	k: 3062	n:1830000
Cons ci ratio: 1.477121e-01	ci left: 3.562818e-04	ci right 4.136247e-04	k: 703	n:1830000
KS ci ratio: 4.906466e-03	ci left: 2.579684e-01	ci right 2.592378e-01	k: 473243	n:1830000
ZMYM4   1830000 perm   1541 sec   (1187 perm/sec)   p_kst 2.586027e-01   p_cons 3.841530e-04   p_joint 1.673224e-03

Joint ci ratio: 7.058581e-02	ci left: 1.614292e-03	ci right 1.732937e-03	k: 3078	n:1840000
Cons ci ratio: 1.473984e-01	ci left: 3.559157e-04	ci right 4.130673e-04	k: 706	n:1840000
KS ci ratio: 4.893247e-03	ci left: 2.579598e-01	ci right 2.592257e-01	k: 475810	n:1840000
ZMYM4   1840000 perm   1557 sec   (1182 perm/sec)   p_kst 2.585924e-01   p_cons 3.836957e-04   p_joint 1.672826e-03

Joint ci ratio: 7.039175e-02	ci left: 1.614594e-03	ci right 1.732921e-03	k: 3095	n:1850000
Cons ci ratio: 1.469832e-01	ci left: 3.560744e-04	ci right 4.130762e-04	k: 710	n:1850000
KS ci ratio: 4.880004e-03	ci left: 2.579616e-01	ci right 2.592240e-01	k: 478396	n:1850000
ZMYM4   1850000 perm   1572 sec   (1177 perm/sec)   p_kst 2.585924e-01   p_cons 3.837838e-04   p_joint 1.672973e-03

Joint ci ratio: 7.021058e-02	ci left: 1.614364e-03	ci right 1.732357e-03	k: 3111	n:1860000
Cons ci ratio: 1.468801e-01	ci left: 3.546779e-04	ci right 4.114128e-04	k: 711	n:1860000
KS ci ratio: 4.866881e-03	ci left: 2.579622e-01	ci right 2.592213e-01	k: 480980	n:1860000
ZMYM4   1860000 perm   1587 sec   (1172 perm/sec)   p_kst 2.585914e-01   p_cons 3.822581e-04   p_joint 1.672581e-03

Joint ci ratio: 6.997480e-02	ci left: 1.616764e-03	ci right 1.734520e-03	k: 3132	n:1870000
Cons ci ratio: 1.464692e-01	ci left: 3.548417e-04	ci right 4.114302e-04	k: 715	n:1870000
KS ci ratio: 4.853498e-03	ci left: 2.579918e-01	ci right 2.592475e-01	k: 483618	n:1870000
ZMYM4   1870000 perm   1601 sec   (1168 perm/sec)   p_kst 2.586193e-01   p_cons 3.823529e-04   p_joint 1.674866e-03

Joint ci ratio: 7.140474e-02	ci left: 1.543371e-03	ci right 1.658173e-03	k: 3008	n:1880000
Cons ci ratio: 1.462651e-01	ci left: 3.539791e-04	ci right 4.103445e-04	k: 717	n:1880000
KS ci ratio: 4.841044e-03	ci left: 2.579561e-01	ci right 2.592084e-01	k: 486134	n:1880000
ZMYM4   1880000 perm   1616 sec   (1163 perm/sec)   p_kst 2.585819e-01   p_cons 3.813830e-04   p_joint 1.600000e-03

Joint ci ratio: 7.123924e-02	ci left: 1.542480e-03	ci right 1.656939e-03	k: 3022	n:1890000
Cons ci ratio: 1.457584e-01	ci left: 3.546551e-04	ci right 4.109155e-04	k: 722	n:1890000
KS ci ratio: 4.827906e-03	ci left: 2.579827e-01	ci right 2.592318e-01	k: 488767	n:1890000
ZMYM4   1890000 perm   1632 sec   (1158 perm/sec)   p_kst 2.586069e-01   p_cons 3.820106e-04   p_joint 1.598942e-03

Joint ci ratio: 7.103975e-02	ci left: 1.543150e-03	ci right 1.657325e-03	k: 3039	n:1900000
Cons ci ratio: 1.450578e-01	ci left: 3.563387e-04	ci right 4.125709e-04	k: 729	n:1900000
KS ci ratio: 4.815270e-03	ci left: 2.579775e-01	ci right 2.592232e-01	k: 491340	n:1900000
ZMYM4   1900000 perm   1647 sec   (1154 perm/sec)   p_kst 2.586000e-01   p_cons 3.836842e-04   p_joint 1.599474e-03

Joint ci ratio: 7.086516e-02	ci left: 1.542785e-03	ci right 1.656641e-03	k: 3054	n:1910000
Cons ci ratio: 1.450579e-01	ci left: 3.544730e-04	ci right 4.104109e-04	k: 729	n:1910000
KS ci ratio: 4.802891e-03	ci left: 2.579598e-01	ci right 2.592022e-01	k: 493889	n:1910000
ZMYM4   1910000 perm   1662 sec   (1149 perm/sec)   p_kst 2.585806e-01   p_cons 3.816754e-04   p_joint 1.598953e-03

Joint ci ratio: 7.065727e-02	ci left: 1.543959e-03	ci right 1.657553e-03	k: 3072	n:1920000
Cons ci ratio: 1.445637e-01	ci left: 3.551366e-04	ci right 4.109717e-04	k: 734	n:1920000
KS ci ratio: 4.790080e-03	ci left: 2.579844e-01	ci right 2.592236e-01	k: 496519	n:1920000
ZMYM4   1920000 perm   1677 sec   (1145 perm/sec)   p_kst 2.586036e-01   p_cons 3.822917e-04   p_joint 1.600000e-03

Joint ci ratio: 7.641478e-02	ci left: 1.309616e-03	ci right 1.414169e-03	k: 2627	n:1930000
Cons ci ratio: 1.552904e-01	ci left: 3.044211e-04	ci right 3.561649e-04	k: 636	n:1930000
KS ci ratio: 4.777906e-03	ci left: 2.579658e-01	ci right 2.592018e-01	k: 499066	n:1930000
ZMYM4   1930000 perm   1694 sec   (1139 perm/sec)   p_kst 2.585834e-01   p_cons 3.295337e-04   p_joint 1.361140e-03

Joint ci ratio: 7.635689e-02	ci left: 1.304888e-03	ci right 1.408981e-03	k: 2631	n:1940000
Cons ci ratio: 1.549260e-01	ci left: 3.043383e-04	ci right 3.559354e-04	k: 639	n:1940000
KS ci ratio: 4.765754e-03	ci left: 2.579530e-01	ci right 2.591858e-01	k: 501624	n:1940000
ZMYM4   1940000 perm   1711 sec   (1134 perm/sec)   p_kst 2.585691e-01   p_cons 3.293814e-04   p_joint 1.356186e-03

Joint ci ratio: 7.670816e-02	ci left: 1.286123e-03	ci right 1.389213e-03	k: 2607	n:1950000
Cons ci ratio: 1.546846e-01	ci left: 3.037635e-04	ci right 3.551754e-04	k: 641	n:1950000
KS ci ratio: 4.753606e-03	ci left: 2.579476e-01	ci right 2.591772e-01	k: 504196	n:1950000
ZMYM4   1950000 perm   1729 sec   (1128 perm/sec)   p_kst 2.585621e-01   p_cons 3.287179e-04   p_joint 1.336923e-03

Joint ci ratio: 7.645929e-02	ci left: 1.288069e-03	ci right 1.390965e-03	k: 2624	n:1960000
Cons ci ratio: 1.542049e-01	ci left: 3.041756e-04	ci right 3.554829e-04	k: 645	n:1960000
KS ci ratio: 4.741865e-03	ci left: 2.579167e-01	ci right 2.591431e-01	k: 506718	n:1960000
ZMYM4   1960000 perm   1747 sec   (1122 perm/sec)   p_kst 2.585296e-01   p_cons 3.290816e-04   p_joint 1.338776e-03

Joint ci ratio: 7.641584e-02	ci left: 1.283024e-03	ci right 1.385456e-03	k: 2627	n:1970000
Cons ci ratio: 1.537296e-01	ci left: 3.045838e-04	ci right 3.557871e-04	k: 649	n:1970000
KS ci ratio: 4.729466e-03	ci left: 2.579466e-01	ci right 2.591699e-01	k: 509359	n:1970000
ZMYM4   1970000 perm   1764 sec   (1117 perm/sec)   p_kst 2.585579e-01   p_cons 3.294416e-04   p_joint 1.333503e-03

Joint ci ratio: 7.634341e-02	ci left: 1.279021e-03	ci right 1.381032e-03	k: 2632	n:1980000
Cons ci ratio: 1.530249e-01	ci left: 3.059595e-04	ci right 3.571367e-04	k: 655	n:1980000
KS ci ratio: 4.717455e-03	ci left: 2.579524e-01	ci right 2.591726e-01	k: 511953	n:1980000
ZMYM4   1980000 perm   1782 sec   (1111 perm/sec)   p_kst 2.585621e-01   p_cons 3.308081e-04   p_joint 1.329293e-03

Joint ci ratio: 7.690134e-02	ci left: 1.253863e-03	ci right 1.354632e-03	k: 2594	n:1990000
Cons ci ratio: 1.530250e-01	ci left: 3.044220e-04	ci right 3.553420e-04	k: 655	n:1990000
KS ci ratio: 4.705974e-03	ci left: 2.579224e-01	ci right 2.591396e-01	k: 514476	n:1990000
ZMYM4   1990000 perm   1800 sec   (1105 perm/sec)   p_kst 2.585307e-01   p_cons 3.291457e-04   p_joint 1.303518e-03

Joint ci ratio: 7.668001e-02	ci left: 1.254950e-03	ci right 1.355503e-03	k: 2609	n:2000000
Cons ci ratio: 1.525606e-01	ci left: 3.048234e-04	ci right 3.556417e-04	k: 659	n:2000000
KS ci ratio: 4.693798e-03	ci left: 2.579563e-01	ci right 2.591704e-01	k: 517126	n:2000000
ZMYM4   2000000 perm   1818 sec   (1100 perm/sec)   p_kst 2.585630e-01   p_cons 3.295000e-04   p_joint 1.304500e-03

Joint ci ratio: 7.648975e-02	ci left: 1.255050e-03	ci right 1.355350e-03	k: 2622	n:2010000
Cons ci ratio: 1.521003e-01	ci left: 3.052211e-04	ci right 3.559382e-04	k: 663	n:2010000
KS ci ratio: 4.681990e-03	ci left: 2.579674e-01	ci right 2.591785e-01	k: 519731	n:2010000
ZMYM4   2010000 perm   1836 sec   (1095 perm/sec)   p_kst 2.585726e-01   p_cons 3.298507e-04   p_joint 1.304478e-03

Joint ci ratio: 7.762427e-02	ci left: 1.211937e-03	ci right 1.310293e-03	k: 2546	n:2020000
Cons ci ratio: 1.514177e-01	ci left: 3.065676e-04	ci right 3.572591e-04	k: 669	n:2020000
KS ci ratio: 4.669993e-03	ci left: 2.580012e-01	ci right 2.592094e-01	k: 522382	n:2020000
ZMYM4   2020000 perm   1855 sec   (1089 perm/sec)   p_kst 2.586050e-01   p_cons 3.311881e-04   p_joint 1.260396e-03

Joint ci ratio: 7.770091e-02	ci left: 1.203552e-03	ci right 1.301328e-03	k: 2541	n:2030000
Cons ci ratio: 1.508557e-01	ci left: 3.074274e-04	ci right 3.580553e-04	k: 674	n:2030000
KS ci ratio: 4.658094e-03	ci left: 2.580342e-01	ci right 2.592394e-01	k: 525032	n:2030000
ZMYM4   2030000 perm   1873 sec   (1084 perm/sec)   p_kst 2.586365e-01   p_cons 3.320197e-04   p_joint 1.251724e-03

Joint ci ratio: 7.759425e-02	ci left: 1.201017e-03	ci right 1.298447e-03	k: 2548	n:2040000
Cons ci ratio: 1.506328e-01	ci left: 3.068638e-04	ci right 3.573175e-04	k: 676	n:2040000
KS ci ratio: 4.646991e-03	ci left: 2.580085e-01	ci right 2.592108e-01	k: 527563	n:2040000
ZMYM4   2040000 perm   1892 sec   (1078 perm/sec)   p_kst 2.586093e-01   p_cons 3.313725e-04   p_joint 1.249020e-03

Joint ci ratio: 7.924581e-02	ci left: 1.144942e-03	ci right 1.239891e-03	k: 2443	n:2050000
Cons ci ratio: 1.504108e-01	ci left: 3.063057e-04	ci right 3.565868e-04	k: 678	n:2050000
KS ci ratio: 4.635632e-03	ci left: 2.580109e-01	ci right 2.592102e-01	k: 530151	n:2050000
ZMYM4   2050000 perm   1911 sec   (1073 perm/sec)   p_kst 2.586102e-01   p_cons 3.307317e-04   p_joint 1.191707e-03

Joint ci ratio: 7.901977e-02	ci left: 1.146045e-03	ci right 1.240803e-03	k: 2457	n:2060000
Cons ci ratio: 1.500797e-01	ci left: 3.062204e-04	ci right 3.563669e-04	k: 681	n:2060000
KS ci ratio: 4.624614e-03	ci left: 2.579920e-01	ci right 2.591883e-01	k: 532695	n:2060000
ZMYM4   2060000 perm   1929 sec   (1068 perm/sec)   p_kst 2.585898e-01   p_cons 3.305825e-04   p_joint 1.192718e-03

Joint ci ratio: 7.879565e-02	ci left: 1.147139e-03	ci right 1.241705e-03	k: 2471	n:2070000
Cons ci ratio: 1.493152e-01	ci left: 3.079961e-04	ci right 3.581535e-04	k: 688	n:2070000
KS ci ratio: 4.613423e-03	ci left: 2.579940e-01	ci right 2.591874e-01	k: 535282	n:2070000
ZMYM4   2070000 perm   1948 sec   (1063 perm/sec)   p_kst 2.585903e-01   p_cons 3.323671e-04   p_joint 1.193720e-03

Joint ci ratio: 7.862094e-02	ci left: 1.146808e-03	ci right 1.241128e-03	k: 2482	n:2080000
Cons ci ratio: 1.490990e-01	ci left: 3.074409e-04	ci right 3.574290e-04	k: 690	n:2080000
KS ci ratio: 4.602452e-03	ci left: 2.579844e-01	ci right 2.591749e-01	k: 537845	n:2080000
ZMYM4   2080000 perm   1966 sec   (1058 perm/sec)   p_kst 2.585793e-01   p_cons 3.317308e-04   p_joint 1.193269e-03

Joint ci ratio: 7.844738e-02	ci left: 1.146481e-03	ci right 1.240556e-03	k: 2493	n:2090000
Cons ci ratio: 1.485624e-01	ci left: 3.082732e-04	ci right 3.582002e-04	k: 695	n:2090000
KS ci ratio: 4.591582e-03	ci left: 2.579730e-01	ci right 2.591607e-01	k: 540404	n:2090000
ZMYM4   2090000 perm   1985 sec   (1053 perm/sec)   p_kst 2.585665e-01   p_cons 3.325359e-04   p_joint 1.192823e-03

Joint ci ratio: 7.818129e-02	ci left: 1.148958e-03	ci right 1.242902e-03	k: 2510	n:2100000
Cons ci ratio: 1.483495e-01	ci left: 3.077222e-04	ci right 3.574822e-04	k: 697	n:2100000
KS ci ratio: 4.580276e-03	ci left: 2.580045e-01	ci right 2.591894e-01	k: 543053	n:2100000
ZMYM4   2100000 perm   2004 sec   (1048 perm/sec)   p_kst 2.585967e-01   p_cons 3.319048e-04   p_joint 1.195238e-03

Joint ci ratio: 7.801062e-02	ci left: 1.148624e-03	ci right 1.242327e-03	k: 2521	n:2110000
Cons ci ratio: 1.478209e-01	ci left: 3.085457e-04	ci right 3.582454e-04	k: 702	n:2110000
KS ci ratio: 4.569251e-03	ci left: 2.580192e-01	ci right 2.592013e-01	k: 545667	n:2110000
ZMYM4   2110000 perm   2023 sec   (1043 perm/sec)   p_kst 2.586100e-01   p_cons 3.327014e-04   p_joint 1.194787e-03

Joint ci ratio: 7.791810e-02	ci left: 1.145981e-03	ci right 1.239352e-03	k: 2527	n:2120000
Cons ci ratio: 1.475065e-01	ci left: 3.084531e-04	ci right 3.580229e-04	k: 705	n:2120000
KS ci ratio: 4.558799e-03	ci left: 2.579923e-01	ci right 2.591716e-01	k: 548193	n:2120000
ZMYM4   2120000 perm   2042 sec   (1038 perm/sec)   p_kst 2.585816e-01   p_cons 3.325472e-04   p_joint 1.191981e-03

Joint ci ratio: 7.771850e-02	ci left: 1.146585e-03	ci right 1.239756e-03	k: 2540	n:2130000
Cons ci ratio: 1.470904e-01	ci left: 3.088137e-04	ci right 3.582891e-04	k: 709	n:2130000
KS ci ratio: 4.548312e-03	ci left: 2.579745e-01	ci right 2.591510e-01	k: 550738	n:2130000
ZMYM4   2130000 perm   2062 sec   (1033 perm/sec)   p_kst 2.585624e-01   p_cons 3.328638e-04   p_joint 1.192488e-03

Joint ci ratio: 7.750525e-02	ci left: 1.147643e-03	ci right 1.240631e-03	k: 2554	n:2140000
Cons ci ratio: 1.464727e-01	ci left: 3.100714e-04	ci right 3.595215e-04	k: 715	n:2140000
KS ci ratio: 4.537765e-03	ci left: 2.579681e-01	ci right 2.591419e-01	k: 553307	n:2140000
ZMYM4   2140000 perm   2082 sec   (1028 perm/sec)   p_kst 2.585547e-01   p_cons 3.341121e-04   p_joint 1.193458e-03

Joint ci ratio: 7.727868e-02	ci left: 1.149147e-03	ci right 1.241973e-03	k: 2569	n:2150000
Cons ci ratio: 1.463706e-01	ci left: 3.090773e-04	ci right 3.583314e-04	k: 716	n:2150000
KS ci ratio: 4.526945e-03	ci left: 2.579911e-01	ci right 2.591621e-01	k: 555939	n:2150000
ZMYM4   2150000 perm   2101 sec   (1023 perm/sec)   p_kst 2.585763e-01   p_cons 3.330233e-04   p_joint 1.194884e-03

Joint ci ratio: 7.729395e-02	ci left: 1.143372e-03	ci right 1.235751e-03	k: 2568	n:2160000
Cons ci ratio: 1.460654e-01	ci left: 3.089845e-04	ci right 3.581121e-04	k: 719	n:2160000
KS ci ratio: 4.516588e-03	ci left: 2.579810e-01	ci right 2.591493e-01	k: 558500	n:2160000
ZMYM4   2160000 perm   2121 sec   (1018 perm/sec)   p_kst 2.585648e-01   p_cons 3.328704e-04   p_joint 1.188889e-03

Joint ci ratio: 7.706922e-02	ci left: 1.144882e-03	ci right 1.237102e-03	k: 2583	n:2170000
Cons ci ratio: 1.456613e-01	ci left: 3.093366e-04	ci right 3.583724e-04	k: 723	n:2170000
KS ci ratio: 4.506043e-03	ci left: 2.579931e-01	ci right 2.591587e-01	k: 561109	n:2170000
ZMYM4   2170000 perm   2141 sec   (1014 perm/sec)   p_kst 2.585756e-01   p_cons 3.331797e-04   p_joint 1.190323e-03

Joint ci ratio: 7.687607e-02	ci left: 1.145479e-03	ci right 1.237506e-03	k: 2596	n:2180000
Cons ci ratio: 1.455609e-01	ci left: 3.083597e-04	ci right 3.572039e-04	k: 724	n:2180000
KS ci ratio: 4.495953e-03	ci left: 2.579725e-01	ci right 2.591354e-01	k: 563647	n:2180000
ZMYM4   2180000 perm   2161 sec   (1009 perm/sec)   p_kst 2.585537e-01   p_cons 3.321101e-04   p_joint 1.190826e-03

Joint ci ratio: 7.671379e-02	ci left: 1.145175e-03	ci right 1.236974e-03	k: 2607	n:2190000
Cons ci ratio: 1.454607e-01	ci left: 3.073916e-04	ci right 3.560461e-04	k: 725	n:2190000
KS ci ratio: 4.485578e-03	ci left: 2.579823e-01	ci right 2.591425e-01	k: 566251	n:2190000
ZMYM4   2190000 perm   2180 sec   (1004 perm/sec)   p_kst 2.585621e-01   p_cons 3.310502e-04   p_joint 1.190411e-03

Joint ci ratio: 7.655253e-02	ci left: 1.144874e-03	ci right 1.236447e-03	k: 2618	n:2200000
Cons ci ratio: 1.449623e-01	ci left: 3.081845e-04	ci right 3.567829e-04	k: 730	n:2200000
KS ci ratio: 4.475312e-03	ci left: 2.579888e-01	ci right 2.591464e-01	k: 568848	n:2200000
ZMYM4   2200000 perm   2201 sec   (1000 perm/sec)   p_kst 2.585673e-01   p_cons 3.318182e-04   p_joint 1.190000e-03

Joint ci ratio: 7.637775e-02	ci left: 1.145019e-03	ci right 1.236386e-03	k: 2630	n:2210000
Cons ci ratio: 1.447645e-01	ci left: 3.076622e-04	ci right 3.561063e-04	k: 732	n:2210000
KS ci ratio: 4.465500e-03	ci left: 2.579622e-01	ci right 2.591172e-01	k: 571372	n:2210000
ZMYM4   2210000 perm   2221 sec   (995 perm/sec)   p_kst 2.585394e-01   p_cons 3.312217e-04   p_joint 1.190045e-03

Joint ci ratio: 7.652370e-02	ci left: 1.135443e-03	ci right 1.226226e-03	k: 2620	n:2220000
Cons ci ratio: 1.445674e-01	ci left: 3.071446e-04	ci right 3.554357e-04	k: 734	n:2220000
KS ci ratio: 4.455213e-03	ci left: 2.579822e-01	ci right 2.591346e-01	k: 573999	n:2220000
ZMYM4   2220000 perm   2241 sec   (991 perm/sec)   p_kst 2.585581e-01   p_cons 3.306306e-04   p_joint 1.180180e-03

Joint ci ratio: 7.649468e-02	ci left: 1.131231e-03	ci right 1.221642e-03	k: 2622	n:2230000
Cons ci ratio: 1.443712e-01	ci left: 3.066317e-04	ci right 3.547711e-04	k: 736	n:2230000
KS ci ratio: 4.444961e-03	ci left: 2.580052e-01	ci right 2.591550e-01	k: 576633	n:2230000
ZMYM4   2230000 perm   2261 sec   (986 perm/sec)   p_kst 2.585798e-01   p_cons 3.300448e-04   p_joint 1.175785e-03

Joint ci ratio: 7.623345e-02	ci left: 1.134063e-03	ci right 1.224377e-03	k: 2640	n:2240000
Cons ci ratio: 1.440782e-01	ci left: 3.065538e-04	ci right 3.545749e-04	k: 739	n:2240000
KS ci ratio: 4.435089e-03	ci left: 2.580013e-01	ci right 2.591485e-01	k: 579207	n:2240000
ZMYM4   2240000 perm   2281 sec   (982 perm/sec)   p_kst 2.585746e-01   p_cons 3.299107e-04   p_joint 1.178571e-03

Joint ci ratio: 7.664149e-02	ci left: 1.116816e-03	ci right 1.206254e-03	k: 2612	n:2250000
Cons ci ratio: 1.438840e-01	ci left: 3.060482e-04	ci right 3.539199e-04	k: 741	n:2250000
KS ci ratio: 4.425514e-03	ci left: 2.579773e-01	ci right 2.591220e-01	k: 581736	n:2250000
ZMYM4   2250000 perm   2301 sec   (978 perm/sec)   p_kst 2.585493e-01   p_cons 3.293333e-04   p_joint 1.160889e-03

Joint ci ratio: 7.784395e-02	ci left: 1.077159e-03	ci right 1.164835e-03	k: 2532	n:2260000
Cons ci ratio: 1.435940e-01	ci left: 3.059737e-04	ci right 3.537290e-04	k: 744	n:2260000
KS ci ratio: 4.415908e-03	ci left: 2.579616e-01	ci right 2.591036e-01	k: 584283	n:2260000
ZMYM4   2260000 perm   2321 sec   (974 perm/sec)   p_kst 2.585323e-01   p_cons 3.292035e-04   p_joint 1.120354e-03

Joint ci ratio: 7.772137e-02	ci left: 1.075869e-03	ci right 1.163297e-03	k: 2540	n:2270000
Cons ci ratio: 1.434017e-01	ci left: 3.054752e-04	ci right 3.530834e-04	k: 746	n:2270000
KS ci ratio: 4.406264e-03	ci left: 2.579548e-01	ci right 2.590943e-01	k: 586850	n:2270000
ZMYM4   2270000 perm   2341 sec   (969 perm/sec)   p_kst 2.585242e-01   p_cons 3.286344e-04   p_joint 1.118943e-03

Joint ci ratio: 7.755369e-02	ci left: 1.075882e-03	ci right 1.163113e-03	k: 2551	n:2280000
Cons ci ratio: 1.431146e-01	ci left: 3.054040e-04	ci right 3.528977e-04	k: 749	n:2280000
KS ci ratio: 4.396541e-03	ci left: 2.579603e-01	ci right 2.590973e-01	k: 589445	n:2280000
ZMYM4   2280000 perm   2362 sec   (965 perm/sec)   p_kst 2.585285e-01   p_cons 3.285088e-04   p_joint 1.118860e-03

Joint ci ratio: 7.755388e-02	ci left: 1.071183e-03	ci right 1.158034e-03	k: 2551	n:2290000
Cons ci ratio: 1.426399e-01	ci left: 3.061758e-04	ci right 3.536181e-04	k: 754	n:2290000
KS ci ratio: 4.386927e-03	ci left: 2.579618e-01	ci right 2.590964e-01	k: 592031	n:2290000
ZMYM4   2290000 perm   2382 sec   (961 perm/sec)   p_kst 2.585288e-01   p_cons 3.292576e-04   p_joint 1.113974e-03

Joint ci ratio: 7.737217e-02	ci left: 1.071642e-03	ci right 1.158317e-03	k: 2563	n:2300000
Cons ci ratio: 1.425456e-01	ci left: 3.052638e-04	ci right 3.525309e-04	k: 755	n:2300000
KS ci ratio: 4.377268e-03	ci left: 2.579729e-01	ci right 2.591051e-01	k: 594639	n:2300000
ZMYM4   2300000 perm   2403 sec   (957 perm/sec)   p_kst 2.585387e-01   p_cons 3.282609e-04   p_joint 1.114348e-03

Joint ci ratio: 7.725180e-02	ci left: 1.070399e-03	ci right 1.156833e-03	k: 2571	n:2310000
Cons ci ratio: 1.423574e-01	ci left: 3.047773e-04	ci right 3.519014e-04	k: 757	n:2310000
KS ci ratio: 4.367864e-03	ci left: 2.579671e-01	ci right 2.590967e-01	k: 597208	n:2310000
ZMYM4   2310000 perm   2424 sec   (953 perm/sec)   p_kst 2.585316e-01   p_cons 3.277056e-04   p_joint 1.112987e-03

Joint ci ratio: 7.711702e-02	ci left: 1.069590e-03	ci right 1.155801e-03	k: 2580	n:2320000
Cons ci ratio: 1.420766e-01	ci left: 3.047107e-04	ci right 3.517237e-04	k: 760	n:2320000
KS ci ratio: 4.358059e-03	ci left: 2.580018e-01	ci right 2.591290e-01	k: 599871	n:2320000
ZMYM4   2320000 perm   2445 sec   (949 perm/sec)   p_kst 2.585651e-01   p_cons 3.275862e-04   p_joint 1.112069e-03

Joint ci ratio: 7.701273e-02	ci left: 1.067946e-03	ci right 1.153903e-03	k: 2587	n:2330000
Cons ci ratio: 1.417973e-01	ci left: 3.046447e-04	ci right 3.515474e-04	k: 763	n:2330000
KS ci ratio: 4.348895e-03	ci left: 2.579855e-01	ci right 2.591103e-01	k: 602416	n:2330000
ZMYM4   2330000 perm   2465 sec   (945 perm/sec)   p_kst 2.585476e-01   p_cons 3.274678e-04   p_joint 1.110300e-03

Joint ci ratio: 7.687920e-02	ci left: 1.067154e-03	ci right 1.152892e-03	k: 2596	n:2340000
Cons ci ratio: 1.415198e-01	ci left: 3.045794e-04	ci right 3.513725e-04	k: 766	n:2340000
KS ci ratio: 4.339813e-03	ci left: 2.579673e-01	ci right 2.590897e-01	k: 604956	n:2340000
ZMYM4   2340000 perm   2486 sec   (941 perm/sec)   p_kst 2.585282e-01   p_cons 3.273504e-04   p_joint 1.109402e-03

Joint ci ratio: 7.677587e-02	ci left: 1.065535e-03	ci right 1.151022e-03	k: 2603	n:2350000
Cons ci ratio: 1.413357e-01	ci left: 3.041043e-04	ci right 3.507585e-04	k: 768	n:2350000
KS ci ratio: 4.330124e-03	ci left: 2.580079e-01	ci right 2.591280e-01	k: 607634	n:2350000
ZMYM4   2350000 perm   2507 sec   (937 perm/sec)   p_kst 2.585677e-01   p_cons 3.268085e-04   p_joint 1.107660e-03

Joint ci ratio: 7.664357e-02	ci left: 1.064760e-03	ci right 1.150031e-03	k: 2612	n:2360000
Cons ci ratio: 1.410608e-01	ci left: 3.040420e-04	ci right 3.505883e-04	k: 771	n:2360000
KS ci ratio: 4.320938e-03	ci left: 2.580093e-01	ci right 2.591269e-01	k: 610220	n:2360000
ZMYM4   2360000 perm   2528 sec   (934 perm/sec)   p_kst 2.585678e-01   p_cons 3.266949e-04   p_joint 1.106780e-03

Joint ci ratio: 7.651195e-02	ci left: 1.063992e-03	ci right 1.149049e-03	k: 2621	n:2370000
Cons ci ratio: 1.406967e-01	ci left: 3.043874e-04	ci right 3.508562e-04	k: 775	n:2370000
KS ci ratio: 4.311930e-03	ci left: 2.580000e-01	ci right 2.591153e-01	k: 612781	n:2370000
ZMYM4   2370000 perm   2549 sec   (930 perm/sec)   p_kst 2.585574e-01   p_cons 3.270042e-04   p_joint 1.105907e-03

Joint ci ratio: 7.638101e-02	ci left: 1.063231e-03	ci right 1.148075e-03	k: 2630	n:2380000
Cons ci ratio: 1.403355e-01	ci left: 3.047301e-04	ci right 3.511218e-04	k: 779	n:2380000
KS ci ratio: 4.303194e-03	ci left: 2.579716e-01	ci right 2.590845e-01	k: 615296	n:2380000
ZMYM4   2380000 perm   2567 sec   (927 perm/sec)   p_kst 2.585277e-01   p_cons 3.273109e-04   p_joint 1.105042e-03

Joint ci ratio: 7.625073e-02	ci left: 1.062476e-03	ci right 1.147109e-03	k: 2639	n:2390000
Cons ci ratio: 1.402457e-01	ci left: 3.038588e-04	ci right 3.500857e-04	k: 780	n:2390000
KS ci ratio: 4.294264e-03	ci left: 2.579655e-01	ci right 2.590761e-01	k: 617864	n:2390000
ZMYM4   2390000 perm   2586 sec   (924 perm/sec)   p_kst 2.585205e-01   p_cons 3.263598e-04   p_joint 1.104184e-03

Joint ci ratio: 7.639589e-02	ci left: 1.053962e-03	ci right 1.138083e-03	k: 2629	n:2400000
Cons ci ratio: 1.398879e-01	ci left: 3.042009e-04	ci right 3.503521e-04	k: 784	n:2400000
KS ci ratio: 4.285705e-03	ci left: 2.579312e-01	ci right 2.590394e-01	k: 620364	n:2400000
ZMYM4   2400000 perm   2604 sec   (922 perm/sec)   p_kst 2.584850e-01   p_cons 3.266667e-04   p_joint 1.095417e-03

Joint ci ratio: 7.243681e-02	ci left: 1.169721e-03	ci right 1.258040e-03	k: 2924	n:2410000
Cons ci ratio: 1.394445e-01	ci left: 3.049409e-04	ci right 3.510454e-04	k: 789	n:2410000
KS ci ratio: 4.276882e-03	ci left: 2.579254e-01	ci right 2.590312e-01	k: 622932	n:2410000
ZMYM4   2410000 perm   2623 sec   (919 perm/sec)   p_kst 2.584780e-01   p_cons 3.273859e-04   p_joint 1.213278e-03

Joint ci ratio: 7.228868e-02	ci left: 1.169757e-03	ci right 1.257890e-03	k: 2936	n:2420000
Cons ci ratio: 1.390927e-01	ci left: 3.052761e-04	ci right 3.513053e-04	k: 793	n:2420000
KS ci ratio: 4.267796e-03	ci left: 2.579481e-01	ci right 2.590517e-01	k: 625569	n:2420000
ZMYM4   2420000 perm   2641 sec   (916 perm/sec)   p_kst 2.584996e-01   p_cons 3.276860e-04   p_joint 1.213223e-03

Joint ci ratio: 7.208030e-02	ci left: 1.171812e-03	ci right 1.259836e-03	k: 2953	n:2430000
Cons ci ratio: 1.388307e-01	ci left: 3.052115e-04	ci right 3.511371e-04	k: 796	n:2430000
KS ci ratio: 4.259024e-03	ci left: 2.579476e-01	ci right 2.590489e-01	k: 628150	n:2430000
ZMYM4   2430000 perm   2660 sec   (914 perm/sec)   p_kst 2.584979e-01   p_cons 3.275720e-04   p_joint 1.215226e-03

Joint ci ratio: 7.198296e-02	ci left: 1.170230e-03	ci right 1.258010e-03	k: 2961	n:2440000
Cons ci ratio: 1.385702e-01	ci left: 3.051475e-04	ci right 3.509701e-04	k: 799	n:2440000
KS ci ratio: 4.250351e-03	ci left: 2.579430e-01	ci right 2.590420e-01	k: 630721	n:2440000
ZMYM4   2440000 perm   2679 sec   (911 perm/sec)   p_kst 2.584922e-01   p_cons 3.274590e-04   p_joint 1.213525e-03

Joint ci ratio: 7.219085e-02	ci left: 1.158639e-03	ci right 1.245812e-03	k: 2944	n:2450000
Cons ci ratio: 1.380534e-01	ci left: 3.062662e-04	ci right 3.520712e-04	k: 805	n:2450000
KS ci ratio: 4.241911e-03	ci left: 2.579221e-01	ci right 2.590189e-01	k: 633252	n:2450000
ZMYM4   2450000 perm   2698 sec   (908 perm/sec)   p_kst 2.584702e-01   p_cons 3.285714e-04   p_joint 1.201633e-03

Joint ci ratio: 7.205642e-02	ci left: 1.158320e-03	ci right 1.245300e-03	k: 2955	n:2460000
Cons ci ratio: 1.376271e-01	ci left: 3.069837e-04	ci right 3.527426e-04	k: 810	n:2460000
KS ci ratio: 4.233464e-03	ci left: 2.579067e-01	ci right 2.590012e-01	k: 635796	n:2460000
ZMYM4   2460000 perm   2717 sec   (905 perm/sec)   p_kst 2.584537e-01   p_cons 3.292683e-04   p_joint 1.201220e-03

Joint ci ratio: 6.911113e-02	ci left: 1.255846e-03	ci right 1.346140e-03	k: 3212	n:2470000
Cons ci ratio: 1.372048e-01	ci left: 3.076955e-04	ci right 3.534083e-04	k: 815	n:2470000
KS ci ratio: 4.225227e-03	ci left: 2.578768e-01	ci right 2.589691e-01	k: 638304	n:2470000
ZMYM4   2470000 perm   2736 sec   (903 perm/sec)   p_kst 2.584227e-01   p_cons 3.299595e-04   p_joint 1.300405e-03

Joint ci ratio: 6.915442e-02	ci left: 1.249197e-03	ci right 1.339071e-03	k: 3208	n:2480000
Cons ci ratio: 1.369532e-01	ci left: 3.076230e-04	ci right 3.532344e-04	k: 818	n:2480000
KS ci ratio: 4.216754e-03	ci left: 2.578730e-01	ci right 2.589631e-01	k: 640876	n:2480000
ZMYM4   2480000 perm   2755 sec   (900 perm/sec)   p_kst 2.584177e-01   p_cons 3.298387e-04   p_joint 1.293548e-03

Joint ci ratio: 6.905771e-02	ci left: 1.247732e-03	ci right 1.337370e-03	k: 3217	n:2490000
Cons ci ratio: 1.366200e-01	ci left: 3.079390e-04	ci right 3.534772e-04	k: 822	n:2490000
KS ci ratio: 4.208221e-03	ci left: 2.578792e-01	ci right 2.589671e-01	k: 643473	n:2490000
ZMYM4   2490000 perm   2775 sec   (897 perm/sec)   p_kst 2.584229e-01   p_cons 3.301205e-04   p_joint 1.291968e-03

Joint ci ratio: 6.888662e-02	ci left: 1.249030e-03	ci right 1.338531e-03	k: 3233	n:2500000
Cons ci ratio: 1.363717e-01	ci left: 3.078663e-04	ci right 3.533042e-04	k: 825	n:2500000
KS ci ratio: 4.199561e-03	ci left: 2.579018e-01	ci right 2.589875e-01	k: 646111	n:2500000
ZMYM4   2500000 perm   2794 sec   (895 perm/sec)   p_kst 2.584444e-01   p_cons 3.300000e-04   p_joint 1.293200e-03

Joint ci ratio: 6.897227e-02	ci left: 1.240922e-03	ci right 1.329956e-03	k: 3225	n:2510000
Cons ci ratio: 1.361247e-01	ci left: 3.077942e-04	ci right 3.531326e-04	k: 828	n:2510000
KS ci ratio: 4.191141e-03	ci left: 2.579071e-01	ci right 2.589907e-01	k: 648706	n:2510000
ZMYM4   2510000 perm   2813 sec   (892 perm/sec)   p_kst 2.584486e-01   p_cons 3.298805e-04   p_joint 1.284861e-03

Joint ci ratio: 6.924161e-02	ci left: 1.226248e-03	ci right 1.314587e-03	k: 3200	n:2520000
Cons ci ratio: 1.357160e-01	ci left: 3.084895e-04	ci right 3.537828e-04	k: 833	n:2520000
KS ci ratio: 4.182542e-03	ci left: 2.579334e-01	ci right 2.590148e-01	k: 651354	n:2520000
ZMYM4   2520000 perm   2833 sec   (890 perm/sec)   p_kst 2.584738e-01   p_cons 3.305556e-04   p_joint 1.269841e-03

Joint ci ratio: 6.911219e-02	ci left: 1.226062e-03	ci right 1.314216e-03	k: 3212	n:2530000
Cons ci ratio: 1.354726e-01	ci left: 3.084157e-04	ci right 3.536104e-04	k: 836	n:2530000
KS ci ratio: 4.174112e-03	ci left: 2.579488e-01	ci right 2.590281e-01	k: 653975	n:2530000
ZMYM4   2530000 perm   2852 sec   (887 perm/sec)   p_kst 2.584881e-01   p_cons 3.304348e-04   p_joint 1.269565e-03

Joint ci ratio: 6.910160e-02	ci left: 1.221622e-03	ci right 1.309443e-03	k: 3213	n:2540000
Cons ci ratio: 1.348296e-01	ci left: 3.102446e-04	ci right 3.554743e-04	k: 844	n:2540000
KS ci ratio: 4.165963e-03	ci left: 2.579428e-01	ci right 2.590200e-01	k: 656542	n:2540000
ZMYM4   2540000 perm   2871 sec   (885 perm/sec)   p_kst 2.584811e-01   p_cons 3.322835e-04   p_joint 1.264961e-03

Joint ci ratio: 6.902655e-02	ci left: 1.219529e-03	ci right 1.307100e-03	k: 3220	n:2550000
Cons ci ratio: 1.348297e-01	ci left: 3.090279e-04	ci right 3.540803e-04	k: 844	n:2550000
KS ci ratio: 4.157484e-03	ci left: 2.579717e-01	ci right 2.590469e-01	k: 659198	n:2550000
ZMYM4   2550000 perm   2892 sec   (882 perm/sec)   p_kst 2.585090e-01   p_cons 3.309804e-04   p_joint 1.262745e-03

Joint ci ratio: 6.889833e-02	ci left: 1.219372e-03	ci right 1.306763e-03	k: 3232	n:2560000
Cons ci ratio: 1.346705e-01	ci left: 3.085757e-04	ci right 3.535047e-04	k: 846	n:2560000
KS ci ratio: 4.149631e-03	ci left: 2.579474e-01	ci right 2.590204e-01	k: 661718	n:2560000
ZMYM4   2560000 perm   2912 sec   (879 perm/sec)   p_kst 2.584836e-01   p_cons 3.304687e-04   p_joint 1.262500e-03

Joint ci ratio: 6.876022e-02	ci left: 1.219598e-03	ci right 1.306823e-03	k: 3245	n:2570000
Cons ci ratio: 1.345911e-01	ci left: 3.077510e-04	ci right 3.525314e-04	k: 847	n:2570000
KS ci ratio: 4.141550e-03	ci left: 2.579485e-01	ci right 2.590194e-01	k: 664303	n:2570000
ZMYM4   2570000 perm   2931 sec   (877 perm/sec)   p_kst 2.584837e-01   p_cons 3.295720e-04   p_joint 1.262646e-03

Joint ci ratio: 6.861240e-02	ci left: 1.220204e-03	ci right 1.307278e-03	k: 3259	n:2580000
Cons ci ratio: 1.342748e-01	ci left: 3.080564e-04	ci right 3.527675e-04	k: 851	n:2580000
KS ci ratio: 4.133414e-03	ci left: 2.579589e-01	ci right 2.590277e-01	k: 666912	n:2580000
ZMYM4   2580000 perm   2951 sec   (874 perm/sec)   p_kst 2.584930e-01   p_cons 3.298450e-04   p_joint 1.263178e-03

Joint ci ratio: 6.931873e-02	ci left: 1.190449e-03	ci right 1.276309e-03	k: 3193	n:2590000
Cons ci ratio: 1.338825e-01	ci left: 3.087328e-04	ci right 3.534007e-04	k: 856	n:2590000
KS ci ratio: 4.125302e-03	ci left: 2.579715e-01	ci right 2.590383e-01	k: 669527	n:2590000
ZMYM4   2590000 perm   2972 sec   (872 perm/sec)   p_kst 2.585046e-01   p_cons 3.305019e-04   p_joint 1.232819e-03

Joint ci ratio: 6.916728e-02	ci left: 1.191162e-03	ci right 1.276878e-03	k: 3207	n:2600000
Cons ci ratio: 1.338045e-01	ci left: 3.079171e-04	ci right 3.524390e-04	k: 857	n:2600000
KS ci ratio: 4.117386e-03	ci left: 2.579702e-01	ci right 2.590349e-01	k: 672106	n:2600000
ZMYM4   2600000 perm   2992 sec   (869 perm/sec)   p_kst 2.585023e-01   p_cons 3.296154e-04   p_joint 1.233462e-03

Joint ci ratio: 6.898468e-02	ci left: 1.192999e-03	ci right 1.278612e-03	k: 3224	n:2610000
Cons ci ratio: 1.332619e-01	ci left: 3.093297e-04	ci right 3.538601e-04	k: 864	n:2610000
KS ci ratio: 4.109467e-03	ci left: 2.579735e-01	ci right 2.590362e-01	k: 674697	n:2610000
ZMYM4   2610000 perm   3012 sec   (867 perm/sec)   p_kst 2.585046e-01   p_cons 3.310345e-04   p_joint 1.235249e-03

Joint ci ratio: 6.884605e-02	ci left: 1.193322e-03	ci right 1.278779e-03	k: 3237	n:2620000
Cons ci ratio: 1.332620e-01	ci left: 3.081491e-04	ci right 3.525095e-04	k: 864	n:2620000
KS ci ratio: 4.101854e-03	ci left: 2.579524e-01	ci right 2.590130e-01	k: 677224	n:2620000
ZMYM4   2620000 perm   3032 sec   (864 perm/sec)   p_kst 2.584824e-01   p_cons 3.297710e-04   p_joint 1.235496e-03

Joint ci ratio: 6.870825e-02	ci left: 1.193643e-03	ci right 1.278944e-03	k: 3250	n:2630000
Cons ci ratio: 1.328784e-01	ci left: 3.088153e-04	ci right 3.531336e-04	k: 869	n:2630000
KS ci ratio: 4.093840e-03	ci left: 2.579729e-01	ci right 2.590315e-01	k: 679860	n:2630000
ZMYM4   2630000 perm   3052 sec   (862 perm/sec)   p_kst 2.585019e-01   p_cons 3.304183e-04   p_joint 1.235741e-03

Joint ci ratio: 6.887833e-02	ci left: 1.183165e-03	ci right 1.267935e-03	k: 3234	n:2640000
Cons ci ratio: 1.328785e-01	ci left: 3.076455e-04	ci right 3.517960e-04	k: 869	n:2640000
KS ci ratio: 4.086229e-03	ci left: 2.579598e-01	ci right 2.590164e-01	k: 682408	n:2640000
ZMYM4   2640000 perm   3073 sec   (859 perm/sec)   p_kst 2.584879e-01   p_cons 3.291667e-04   p_joint 1.225000e-03

Joint ci ratio: 6.876154e-02	ci left: 1.182780e-03	ci right 1.267373e-03	k: 3245	n:2650000
Cons ci ratio: 1.325741e-01	ci left: 3.079439e-04	ci right 3.520280e-04	k: 873	n:2650000
KS ci ratio: 4.078463e-03	ci left: 2.579654e-01	ci right 2.590200e-01	k: 685005	n:2650000
ZMYM4   2650000 perm   3093 sec   (857 perm/sec)   p_kst 2.584925e-01   p_cons 3.294340e-04   p_joint 1.224528e-03

Joint ci ratio: 6.860317e-02	ci left: 1.183875e-03	ci right 1.268344e-03	k: 3260	n:2660000
Cons ci ratio: 1.322717e-01	ci left: 3.082401e-04	ci right 3.522581e-04	k: 877	n:2660000
KS ci ratio: 4.070666e-03	ci left: 2.579781e-01	ci right 2.590307e-01	k: 687621	n:2660000
ZMYM4   2660000 perm   3114 sec   (854 perm/sec)   p_kst 2.585041e-01   p_cons 3.296992e-04   p_joint 1.225564e-03

Joint ci ratio: 6.647387e-02	ci left: 1.257503e-03	ci right 1.344333e-03	k: 3472	n:2670000
Cons ci ratio: 1.318967e-01	ci left: 3.088965e-04	ci right 3.528733e-04	k: 882	n:2670000
KS ci ratio: 4.062869e-03	ci left: 2.579948e-01	ci right 2.590455e-01	k: 690248	n:2670000
ZMYM4   2670000 perm   3135 sec   (852 perm/sec)   p_kst 2.585199e-01   p_cons 3.303371e-04   p_joint 1.300375e-03

Joint ci ratio: 6.633076e-02	ci left: 1.258315e-03	ci right 1.345007e-03	k: 3487	n:2680000
Cons ci ratio: 1.315989e-01	ci left: 3.091872e-04	ci right 3.530983e-04	k: 886	n:2680000
KS ci ratio: 4.055030e-03	ci left: 2.580195e-01	ci right 2.590683e-01	k: 692897	n:2680000
ZMYM4   2680000 perm   3155 sec   (849 perm/sec)   p_kst 2.585437e-01   p_cons 3.305970e-04   p_joint 1.301119e-03

Joint ci ratio: 6.741362e-02	ci left: 1.213062e-03	ci right 1.298054e-03	k: 3376	n:2690000
Cons ci ratio: 1.312295e-01	ci left: 3.098355e-04	ci right 3.537054e-04	k: 891	n:2690000
KS ci ratio: 4.047593e-03	ci left: 2.580103e-01	ci right 2.590571e-01	k: 695455	n:2690000
ZMYM4   2690000 perm   3176 sec   (847 perm/sec)   p_kst 2.585335e-01   p_cons 3.312268e-04   p_joint 1.255019e-03

Joint ci ratio: 6.728424e-02	ci left: 1.213303e-03	ci right 1.298143e-03	k: 3389	n:2700000
Cons ci ratio: 1.309363e-01	ci left: 3.101208e-04	ci right 3.539255e-04	k: 895	n:2700000
KS ci ratio: 4.040120e-03	ci left: 2.580086e-01	ci right 2.590534e-01	k: 698033	n:2700000
ZMYM4   2700000 perm   3196 sec   (845 perm/sec)   p_kst 2.585307e-01   p_cons 3.314815e-04   p_joint 1.255185e-03

Joint ci ratio: 6.714571e-02	ci left: 1.213905e-03	ci right 1.298605e-03	k: 3403	n:2710000
Cons ci ratio: 1.305000e-01	ci left: 3.111181e-04	ci right 3.549058e-04	k: 901	n:2710000
KS ci ratio: 4.032609e-03	ci left: 2.580142e-01	ci right 2.590571e-01	k: 700631	n:2710000
ZMYM4   2710000 perm   3217 sec   (842 perm/sec)   p_kst 2.585354e-01   p_cons 3.324723e-04   p_joint 1.255720e-03

Joint ci ratio: 6.704733e-02	ci left: 1.213057e-03	ci right 1.297569e-03	k: 3413	n:2720000
Cons ci ratio: 1.304278e-01	ci left: 3.103299e-04	ci right 3.539807e-04	k: 902	n:2720000
KS ci ratio: 4.025419e-03	ci left: 2.579934e-01	ci right 2.590343e-01	k: 703157	n:2720000
ZMYM4   2720000 perm   3237 sec   (840 perm/sec)   p_kst 2.585136e-01   p_cons 3.316176e-04   p_joint 1.254779e-03

Joint ci ratio: 6.705732e-02	ci left: 1.208253e-03	ci right 1.292444e-03	k: 3412	n:2730000
Cons ci ratio: 1.302836e-01	ci left: 3.099019e-04	ci right 3.534405e-04	k: 904	n:2730000
KS ci ratio: 4.018036e-03	ci left: 2.579946e-01	ci right 2.590337e-01	k: 705743	n:2730000
ZMYM4   2730000 perm   3258 sec   (838 perm/sec)   p_kst 2.585139e-01   p_cons 3.311355e-04   p_joint 1.249817e-03

Joint ci ratio: 6.691042e-02	ci left: 1.209227e-03	ci right 1.293293e-03	k: 3427	n:2740000
Cons ci ratio: 1.299966e-01	ci left: 3.101832e-04	ci right 3.536579e-04	k: 908	n:2740000
KS ci ratio: 4.010599e-03	ci left: 2.580050e-01	ci right 2.590422e-01	k: 708354	n:2740000
ZMYM4   2740000 perm   3279 sec   (836 perm/sec)   p_kst 2.585234e-01   p_cons 3.313869e-04   p_joint 1.250730e-03

Joint ci ratio: 6.673537e-02	ci left: 1.211266e-03	ci right 1.295245e-03	k: 3445	n:2750000
Cons ci ratio: 1.297115e-01	ci left: 3.104626e-04	ci right 3.538737e-04	k: 912	n:2750000
KS ci ratio: 4.003305e-03	ci left: 2.580055e-01	ci right 2.590408e-01	k: 710938	n:2750000
ZMYM4   2750000 perm   3299 sec   (833 perm/sec)   p_kst 2.585229e-01   p_cons 3.316364e-04   p_joint 1.252727e-03

Joint ci ratio: 6.691072e-02	ci left: 1.200464e-03	ci right 1.283922e-03	k: 3427	n:2760000
Cons ci ratio: 1.295697e-01	ci left: 3.100388e-04	ci right 3.533397e-04	k: 914	n:2760000
KS ci ratio: 3.996122e-03	ci left: 2.579991e-01	ci right 2.590325e-01	k: 713503	n:2760000
ZMYM4   2760000 perm   3321 sec   (831 perm/sec)   p_kst 2.585156e-01   p_cons 3.311594e-04   p_joint 1.241667e-03

Joint ci ratio: 6.739487e-02	ci left: 1.178737e-03	ci right 1.261300e-03	k: 3378	n:2770000
Cons ci ratio: 1.293578e-01	ci left: 3.099675e-04	ci right 3.531822e-04	k: 917	n:2770000
KS ci ratio: 3.988993e-03	ci left: 2.579913e-01	ci right 2.590229e-01	k: 716064	n:2770000
ZMYM4   2770000 perm   3342 sec   (829 perm/sec)   p_kst 2.585069e-01   p_cons 3.310469e-04   p_joint 1.219495e-03

Joint ci ratio: 6.719621e-02	ci left: 1.181570e-03	ci right 1.264079e-03	k: 3398	n:2780000
Cons ci ratio: 1.291470e-01	ci left: 3.098968e-04	ci right 3.530257e-04	k: 920	n:2780000
KS ci ratio: 3.981708e-03	ci left: 2.580023e-01	ci right 2.590320e-01	k: 718677	n:2780000
ZMYM4   2780000 perm   3364 sec   (826 perm/sec)   p_kst 2.585169e-01   p_cons 3.309353e-04   p_joint 1.222302e-03

Joint ci ratio: 6.707790e-02	ci left: 1.181564e-03	ci right 1.263921e-03	k: 3410	n:2790000
Cons ci ratio: 1.288674e-01	ci left: 3.101735e-04	ci right 3.532403e-04	k: 924	n:2790000
KS ci ratio: 3.974741e-03	ci left: 2.579863e-01	ci right 2.590142e-01	k: 721215	n:2790000
ZMYM4   2790000 perm   3385 sec   (824 perm/sec)   p_kst 2.585000e-01   p_cons 3.311828e-04   p_joint 1.222222e-03

Joint ci ratio: 6.691132e-02	ci left: 1.183314e-03	ci right 1.265580e-03	k: 3427	n:2800000
Cons ci ratio: 1.282449e-01	ci left: 3.121766e-04	ci right 3.552963e-04	k: 933	n:2800000
KS ci ratio: 3.967844e-03	ci left: 2.579673e-01	ci right 2.589932e-01	k: 723744	n:2800000
ZMYM4   2800000 perm   3407 sec   (822 perm/sec)   p_kst 2.584800e-01   p_cons 3.332143e-04   p_joint 1.223929e-03

Joint ci ratio: 6.678479e-02	ci left: 1.183652e-03	ci right 1.265780e-03	k: 3440	n:2810000
Cons ci ratio: 1.281078e-01	ci left: 3.117546e-04	ci right 3.547665e-04	k: 935	n:2810000
KS ci ratio: 3.961041e-03	ci left: 2.579427e-01	ci right 2.589667e-01	k: 726257	n:2810000
ZMYM4   2810000 perm   3428 sec   (820 perm/sec)   p_kst 2.584544e-01   p_cons 3.327402e-04   p_joint 1.224199e-03

Joint ci ratio: 6.664933e-02	ci left: 1.184336e-03	ci right 1.266339e-03	k: 3454	n:2820000
Cons ci ratio: 1.278350e-01	ci left: 3.120221e-04	ci right 3.549723e-04	k: 939	n:2820000
KS ci ratio: 3.953996e-03	ci left: 2.579451e-01	ci right 2.589674e-01	k: 728846	n:2820000
ZMYM4   2820000 perm   3449 sec   (818 perm/sec)   p_kst 2.584560e-01   p_cons 3.329787e-04   p_joint 1.224823e-03

Joint ci ratio: 6.662052e-02	ci left: 1.181194e-03	ci right 1.262942e-03	k: 3457	n:2830000
Cons ci ratio: 1.276315e-01	ci left: 3.119458e-04	ci right 3.548119e-04	k: 942	n:2830000
KS ci ratio: 3.946959e-03	ci left: 2.579504e-01	ci right 2.589709e-01	k: 731443	n:2830000
ZMYM4   2830000 perm   3471 sec   (815 perm/sec)   p_kst 2.584604e-01   p_cons 3.328622e-04   p_joint 1.221555e-03

Joint ci ratio: 6.653403e-02	ci left: 1.180151e-03	ci right 1.261717e-03	k: 3466	n:2840000
Cons ci ratio: 1.273616e-01	ci left: 3.122109e-04	ci right 3.550159e-04	k: 946	n:2840000
KS ci ratio: 3.939948e-03	ci left: 2.579568e-01	ci right 2.589754e-01	k: 734043	n:2840000
ZMYM4   2840000 perm   3493 sec   (813 perm/sec)   p_kst 2.584658e-01   p_cons 3.330986e-04   p_joint 1.220423e-03

Joint ci ratio: 6.310921e-02	ci left: 1.309258e-03	ci right 1.394919e-03	k: 3852	n:2850000
Cons ci ratio: 1.268934e-01	ci left: 3.134935e-04	ci right 3.563044e-04	k: 953	n:2850000
KS ci ratio: 3.933072e-03	ci left: 2.579536e-01	ci right 2.589704e-01	k: 736616	n:2850000
ZMYM4   2850000 perm   3515 sec   (811 perm/sec)   p_kst 2.584618e-01   p_cons 3.343860e-04   p_joint 1.351579e-03

Joint ci ratio: 6.312576e-02	ci left: 1.303991e-03	ci right 1.389331e-03	k: 3850	n:2860000
Cons ci ratio: 1.266944e-01	ci left: 3.134130e-04	ci right 3.561408e-04	k: 956	n:2860000
KS ci ratio: 3.926038e-03	ci left: 2.579693e-01	ci right 2.589844e-01	k: 739243	n:2860000
ZMYM4   2860000 perm   3537 sec   (809 perm/sec)   p_kst 2.584766e-01   p_cons 3.342657e-04   p_joint 1.346154e-03

Joint ci ratio: 6.302766e-02	ci left: 1.303563e-03	ci right 1.388737e-03	k: 3862	n:2870000
Cons ci ratio: 1.264963e-01	ci left: 3.133332e-04	ci right 3.559783e-04	k: 959	n:2870000
KS ci ratio: 3.919099e-03	ci left: 2.579793e-01	ci right 2.589926e-01	k: 741854	n:2870000
ZMYM4   2870000 perm   3559 sec   (806 perm/sec)   p_kst 2.584857e-01   p_cons 3.341463e-04   p_joint 1.345645e-03

Joint ci ratio: 6.332395e-02	ci left: 1.286734e-03	ci right 1.371218e-03	k: 3826	n:2880000
Cons ci ratio: 1.263647e-01	ci left: 3.129177e-04	ci right 3.554586e-04	k: 961	n:2880000
KS ci ratio: 3.912285e-03	ci left: 2.579806e-01	ci right 2.589922e-01	k: 744440	n:2880000
ZMYM4   2880000 perm   3583 sec   (804 perm/sec)   p_kst 2.584861e-01   p_cons 3.336806e-04   p_joint 1.328472e-03

Joint ci ratio: 6.324142e-02	ci left: 1.285687e-03	ci right 1.369989e-03	k: 3836	n:2890000
Cons ci ratio: 1.262992e-01	ci left: 3.121700e-04	ci right 3.545856e-04	k: 962	n:2890000
KS ci ratio: 3.905531e-03	ci left: 2.579794e-01	ci right 2.589892e-01	k: 747019	n:2890000
ZMYM4   2890000 perm   3605 sec   (802 perm/sec)   p_kst 2.584841e-01   p_cons 3.328720e-04   p_joint 1.327336e-03

Joint ci ratio: 6.375947e-02	ci left: 1.260213e-03	ci right 1.343546e-03	k: 3774	n:2900000
Cons ci ratio: 1.261682e-01	ci left: 3.117614e-04	ci right 3.540744e-04	k: 964	n:2900000
KS ci ratio: 3.898826e-03	ci left: 2.579769e-01	ci right 2.589850e-01	k: 749594	n:2900000
ZMYM4   2900000 perm   3627 sec   (800 perm/sec)   p_kst 2.584807e-01   p_cons 3.324138e-04   p_joint 1.301379e-03

Joint ci ratio: 6.374270e-02	ci left: 1.256559e-03	ci right 1.339628e-03	k: 3776	n:2910000
Cons ci ratio: 1.258426e-01	ci left: 3.123541e-04	ci right 3.546299e-04	k: 969	n:2910000
KS ci ratio: 3.892086e-03	ci left: 2.579812e-01	ci right 2.589876e-01	k: 752189	n:2910000
ZMYM4   2910000 perm   3649 sec   (798 perm/sec)   p_kst 2.584842e-01   p_cons 3.329897e-04   p_joint 1.297595e-03

Joint ci ratio: 6.359130e-02	ci left: 1.258322e-03	ci right 1.341302e-03	k: 3794	n:2920000
Cons ci ratio: 1.255195e-01	ci left: 3.129429e-04	ci right 3.551816e-04	k: 974	n:2920000
KS ci ratio: 3.885474e-03	ci left: 2.579763e-01	ci right 2.589810e-01	k: 754757	n:2920000
ZMYM4   2920000 perm   3670 sec   (796 perm/sec)   p_kst 2.584784e-01   p_cons 3.335616e-04   p_joint 1.299315e-03

Joint ci ratio: 6.346597e-02	ci left: 1.259065e-03	ci right 1.341925e-03	k: 3809	n:2930000
Cons ci ratio: 1.253910e-01	ci left: 3.125360e-04	ci right 3.546734e-04	k: 976	n:2930000
KS ci ratio: 3.878602e-03	ci left: 2.580005e-01	ci right 2.590034e-01	k: 757410	n:2930000
ZMYM4   2930000 perm   3695 sec   (793 perm/sec)   p_kst 2.585017e-01   p_cons 3.331058e-04   p_joint 1.300000e-03

Joint ci ratio: 6.335798e-02	ci left: 1.259135e-03	ci right 1.341853e-03	k: 3822	n:2940000
Cons ci ratio: 1.252629e-01	ci left: 3.121319e-04	ci right 3.541686e-04	k: 978	n:2940000
KS ci ratio: 3.871907e-03	ci left: 2.580105e-01	ci right 2.590117e-01	k: 760022	n:2940000
ZMYM4   2940000 perm   3717 sec   (791 perm/sec)   p_kst 2.585109e-01   p_cons 3.326531e-04   p_joint 1.300000e-03

Joint ci ratio: 6.320929e-02	ci left: 1.260871e-03	ci right 1.343502e-03	k: 3840	n:2950000
Cons ci ratio: 1.249442e-01	ci left: 3.127157e-04	ci right 3.547159e-04	k: 983	n:2950000
KS ci ratio: 3.865200e-03	ci left: 2.580252e-01	ci right 2.590248e-01	k: 762648	n:2950000
ZMYM4   2950000 perm   3739 sec   (789 perm/sec)   p_kst 2.585247e-01   p_cons 3.332203e-04   p_joint 1.301695e-03

Joint ci ratio: 6.304529e-02	ci left: 1.263262e-03	ci right 1.345827e-03	k: 3860	n:2960000
Cons ci ratio: 1.248174e-01	ci left: 3.123138e-04	ci right 3.542144e-04	k: 985	n:2960000
KS ci ratio: 3.858397e-03	ci left: 2.580526e-01	ci right 2.590505e-01	k: 765312	n:2960000
ZMYM4   2960000 perm   3761 sec   (787 perm/sec)   p_kst 2.585514e-01   p_cons 3.327703e-04   p_joint 1.304054e-03

Joint ci ratio: 6.287445e-02	ci left: 1.265968e-03	ci right 1.348477e-03	k: 3881	n:2970000
Cons ci ratio: 1.246910e-01	ci left: 3.119147e-04	ci right 3.537161e-04	k: 987	n:2970000
KS ci ratio: 3.851681e-03	ci left: 2.580748e-01	ci right 2.590711e-01	k: 767961	n:2970000
ZMYM4   2970000 perm   3784 sec   (785 perm/sec)   p_kst 2.585727e-01   p_cons 3.323232e-04   p_joint 1.306734e-03

Joint ci ratio: 6.278558e-02	ci left: 1.265353e-03	ci right 1.347701e-03	k: 3892	n:2980000
Cons ci ratio: 1.245651e-01	ci left: 3.115182e-04	ci right 3.532212e-04	k: 989	n:2980000
KS ci ratio: 3.845135e-03	ci left: 2.580835e-01	ci right 2.590781e-01	k: 770570	n:2980000
ZMYM4   2980000 perm   3806 sec   (783 perm/sec)   p_kst 2.585805e-01   p_cons 3.318792e-04   p_joint 1.306040e-03

Joint ci ratio: 6.292344e-02	ci left: 1.255525e-03	ci right 1.337419e-03	k: 3875	n:2990000
Cons ci ratio: 1.242517e-01	ci left: 3.120965e-04	ci right 3.537641e-04	k: 994	n:2990000
KS ci ratio: 3.838625e-03	ci left: 2.580917e-01	ci right 2.590847e-01	k: 773178	n:2990000
ZMYM4   2990000 perm   3829 sec   (781 perm/sec)   p_kst 2.585880e-01   p_cons 3.324415e-04   p_joint 1.295987e-03

Joint ci ratio: 6.363439e-02	ci left: 1.223126e-03	ci right 1.303842e-03	k: 3789	n:3000000
Cons ci ratio: 1.240026e-01	ci left: 3.123481e-04	ci right 3.539596e-04	k: 998	n:3000000
KS ci ratio: 3.832225e-03	ci left: 2.580923e-01	ci right 2.590835e-01	k: 775763	n:3000000
ZMYM4   3000000 perm   3852 sec   (779 perm/sec)   p_kst 2.585877e-01   p_cons 3.326667e-04   p_joint 1.263000e-03

Joint ci ratio: 6.352553e-02	ci left: 1.223312e-03	ci right 1.303898e-03	k: 3802	n:3010000
Cons ci ratio: 1.237551e-01	ci left: 3.125982e-04	ci right 3.541537e-04	k: 1002	n:3010000
KS ci ratio: 3.825711e-03	ci left: 2.581074e-01	ci right 2.590971e-01	k: 778392	n:3010000
ZMYM4   3010000 perm   3874 sec   (777 perm/sec)   p_kst 2.586020e-01   p_cons 3.328904e-04   p_joint 1.263123e-03

Joint ci ratio: 6.345053e-02	ci left: 1.222195e-03	ci right 1.302608e-03	k: 3811	n:3020000
Cons ci ratio: 1.235705e-01	ci left: 3.125257e-04	ci right 3.540051e-04	k: 1005	n:3020000
KS ci ratio: 3.819382e-03	ci left: 2.581072e-01	ci right 2.590952e-01	k: 780975	n:3020000
ZMYM4   3020000 perm   3897 sec   (775 perm/sec)   p_kst 2.586010e-01   p_cons 3.327815e-04   p_joint 1.261921e-03

Joint ci ratio: 6.357603e-02	ci left: 1.213289e-03	ci right 1.293280e-03	k: 3796	n:3030000
Cons ci ratio: 1.233255e-01	ci left: 3.127736e-04	ci right 3.541977e-04	k: 1009	n:3030000
KS ci ratio: 3.812854e-03	ci left: 2.581301e-01	ci right 2.591165e-01	k: 783628	n:3030000
ZMYM4   3030000 perm   3919 sec   (773 perm/sec)   p_kst 2.586231e-01   p_cons 3.330033e-04   p_joint 1.252805e-03

Joint ci ratio: 6.348416e-02	ci left: 1.212859e-03	ci right 1.292701e-03	k: 3807	n:3040000
Cons ci ratio: 1.232036e-01	ci left: 3.123824e-04	ci right 3.537107e-04	k: 1011	n:3040000
KS ci ratio: 3.806540e-03	ci left: 2.581348e-01	ci right 2.591196e-01	k: 786226	n:3040000
ZMYM4   3040000 perm   3942 sec   (771 perm/sec)   p_kst 2.586270e-01   p_cons 3.325658e-04   p_joint 1.252303e-03

Joint ci ratio: 6.335117e-02	ci left: 1.214045e-03	ci right 1.293792e-03	k: 3823	n:3050000
Cons ci ratio: 1.230214e-01	ci left: 3.123115e-04	ci right 3.535649e-04	k: 1014	n:3050000
KS ci ratio: 3.800402e-03	ci left: 2.581247e-01	ci right 2.591079e-01	k: 788779	n:3050000
ZMYM4   3050000 perm   3965 sec   (769 perm/sec)   p_kst 2.586161e-01   p_cons 3.324590e-04   p_joint 1.253443e-03

Joint ci ratio: 6.335130e-02	ci left: 1.210077e-03	ci right 1.289564e-03	k: 3823	n:3060000
Cons ci ratio: 1.229004e-01	ci left: 3.119244e-04	ci right 3.530831e-04	k: 1016	n:3060000
KS ci ratio: 3.794237e-03	ci left: 2.581206e-01	ci right 2.591021e-01	k: 791350	n:3060000
ZMYM4   3060000 perm   3989 sec   (767 perm/sec)   p_kst 2.586111e-01   p_cons 3.320261e-04   p_joint 1.249346e-03

Joint ci ratio: 6.326865e-02	ci left: 1.209341e-03	ci right 1.288672e-03	k: 3833	n:3070000
Cons ci ratio: 1.227195e-01	ci left: 3.118555e-04	ci right 3.529402e-04	k: 1019	n:3070000
KS ci ratio: 3.787972e-03	ci left: 2.581295e-01	ci right 2.591094e-01	k: 793961	n:3070000
ZMYM4   3070000 perm   4012 sec   (765 perm/sec)   p_kst 2.586192e-01   p_cons 3.319218e-04   p_joint 1.248534e-03

Joint ci ratio: 6.318633e-02	ci left: 1.208610e-03	ci right 1.287787e-03	k: 3843	n:3080000
Cons ci ratio: 1.225994e-01	ci left: 3.114724e-04	ci right 3.524636e-04	k: 1021	n:3080000
KS ci ratio: 3.781847e-03	ci left: 2.581273e-01	ci right 2.591056e-01	k: 796538	n:3080000
ZMYM4   3080000 perm   4036 sec   (763 perm/sec)   p_kst 2.586162e-01   p_cons 3.314935e-04   p_joint 1.247727e-03

Joint ci ratio: 6.309613e-02	ci left: 1.208203e-03	ci right 1.287235e-03	k: 3854	n:3090000
Cons ci ratio: 1.224797e-01	ci left: 3.110918e-04	ci right 3.519900e-04	k: 1023	n:3090000
KS ci ratio: 3.775647e-03	ci left: 2.581358e-01	ci right 2.591126e-01	k: 799148	n:3090000
ZMYM4   3090000 perm   4059 sec   (761 perm/sec)   p_kst 2.586239e-01   p_cons 3.310680e-04   p_joint 1.247249e-03

Joint ci ratio: 6.322777e-02	ci left: 1.199225e-03	ci right 1.277840e-03	k: 3838	n:3100000
Cons ci ratio: 1.223007e-01	ci left: 3.110264e-04	ci right 3.518519e-04	k: 1026	n:3100000
KS ci ratio: 3.769680e-03	ci left: 2.581236e-01	ci right 2.590988e-01	k: 801694	n:3100000
ZMYM4   3100000 perm   4083 sec   (759 perm/sec)   p_kst 2.586110e-01   p_cons 3.309677e-04   p_joint 1.238065e-03

Joint ci ratio: 6.315382e-02	ci left: 1.198217e-03	ci right 1.276671e-03	k: 3847	n:3110000
Cons ci ratio: 1.221818e-01	ci left: 3.106497e-04	ci right 3.513833e-04	k: 1028	n:3110000
KS ci ratio: 3.763706e-03	ci left: 2.581150e-01	ci right 2.590886e-01	k: 804251	n:3110000
ZMYM4   3110000 perm   4107 sec   (757 perm/sec)   p_kst 2.586016e-01   p_cons 3.305466e-04   p_joint 1.236977e-03

Joint ci ratio: 6.305558e-02	ci left: 1.198163e-03	ci right 1.276486e-03	k: 3859	n:3120000
Cons ci ratio: 1.221225e-01	ci left: 3.099648e-04	ci right 3.505874e-04	k: 1029	n:3120000
KS ci ratio: 3.757616e-03	ci left: 2.581213e-01	ci right 2.590933e-01	k: 806854	n:3120000
ZMYM4   3120000 perm   4130 sec   (755 perm/sec)   p_kst 2.586071e-01   p_cons 3.298077e-04   p_joint 1.236859e-03

Joint ci ratio: 6.042470e-02	ci left: 1.302230e-03	ci right 1.383681e-03	k: 4202	n:3130000
Cons ci ratio: 1.217096e-01	ci left: 3.111427e-04	ci right 3.517719e-04	k: 1036	n:3130000
KS ci ratio: 3.751565e-03	ci left: 2.581265e-01	ci right 2.590970e-01	k: 809454	n:3130000
ZMYM4   3130000 perm   4154 sec   (753 perm/sec)   p_kst 2.586115e-01   p_cons 3.309904e-04   p_joint 1.342492e-03

Joint ci ratio: 6.025996e-02	ci left: 1.305297e-03	ci right 1.386709e-03	k: 4225	n:3140000
Cons ci ratio: 1.213589e-01	ci left: 3.120046e-04	ci right 3.526205e-04	k: 1042	n:3140000
KS ci ratio: 3.745562e-03	ci left: 2.581298e-01	ci right 2.590987e-01	k: 812048	n:3140000
ZMYM4   3140000 perm   4178 sec   (752 perm/sec)   p_kst 2.586140e-01   p_cons 3.318471e-04   p_joint 1.345541e-03

Joint ci ratio: 6.012489e-02	ci left: 1.307095e-03	ci right 1.388430e-03	k: 4244	n:3150000
Cons ci ratio: 1.210690e-01	ci left: 3.125532e-04	ci right 3.531364e-04	k: 1047	n:3150000
KS ci ratio: 3.739489e-03	ci left: 2.581432e-01	ci right 2.591106e-01	k: 814674	n:3150000
ZMYM4   3150000 perm   4201 sec   (750 perm/sec)   p_kst 2.586267e-01   p_cons 3.323810e-04   p_joint 1.347302e-03

Joint ci ratio: 6.006130e-02	ci left: 1.305764e-03	ci right 1.386927e-03	k: 4253	n:3160000
Cons ci ratio: 1.209537e-01	ci left: 3.121779e-04	ci right 3.526710e-04	k: 1049	n:3160000
KS ci ratio: 3.733759e-03	ci left: 2.581242e-01	ci right 2.590901e-01	k: 817198	n:3160000
ZMYM4   3160000 perm   4226 sec   (748 perm/sec)   p_kst 2.586070e-01   p_cons 3.319620e-04   p_joint 1.345886e-03

Joint ci ratio: 5.748683e-02	ci left: 1.422557e-03	ci right 1.507064e-03	k: 4642	n:3170000
Cons ci ratio: 1.207240e-01	ci left: 3.124168e-04	ci right 3.528584e-04	k: 1053	n:3170000
KS ci ratio: 3.727991e-03	ci left: 2.581121e-01	ci right 2.590764e-01	k: 819743	n:3170000
ZMYM4   3170000 perm   4250 sec   (746 perm/sec)   p_kst 2.585940e-01   p_cons 3.321767e-04   p_joint 1.464353e-03

Joint ci ratio: 5.765509e-02	ci left: 1.409715e-03	ci right 1.493713e-03	k: 4615	n:3180000
Cons ci ratio: 1.206668e-01	ci left: 3.117393e-04	ci right 3.520728e-04	k: 1054	n:3180000
KS ci ratio: 3.721951e-03	ci left: 2.581308e-01	ci right 2.590936e-01	k: 822386	n:3180000
ZMYM4   3180000 perm   4275 sec   (744 perm/sec)   p_kst 2.586119e-01   p_cons 3.314465e-04   p_joint 1.451258e-03

Joint ci ratio: 5.758032e-02	ci left: 1.409004e-03	ci right 1.492846e-03	k: 4627	n:3190000
Cons ci ratio: 1.205526e-01	ci left: 3.113701e-04	ci right 3.516150e-04	k: 1056	n:3190000
KS ci ratio: 3.715994e-03	ci left: 2.581437e-01	ci right 2.591050e-01	k: 825011	n:3190000
ZMYM4   3190000 perm   4299 sec   (742 perm/sec)   p_kst 2.586241e-01   p_cons 3.310345e-04   p_joint 1.450470e-03

Joint ci ratio: 5.751204e-02	ci left: 1.407988e-03	ci right 1.491668e-03	k: 4638	n:3200000
Cons ci ratio: 1.202118e-01	ci left: 3.122156e-04	ci right 3.524476e-04	k: 1062	n:3200000
KS ci ratio: 3.710248e-03	ci left: 2.581378e-01	ci right 2.590976e-01	k: 827576	n:3200000
ZMYM4   3200000 perm   4323 sec   (740 perm/sec)   p_kst 2.586175e-01   p_cons 3.318750e-04   p_joint 1.449375e-03

Joint ci ratio: 5.741928e-02	ci left: 1.408208e-03	ci right 1.491761e-03	k: 4653	n:3210000
Cons ci ratio: 1.198179e-01	ci left: 3.133582e-04	ci right 3.535957e-04	k: 1069	n:3210000
KS ci ratio: 3.704435e-03	ci left: 2.581416e-01	ci right 2.590999e-01	k: 830172	n:3210000
ZMYM4   3210000 perm   4347 sec   (738 perm/sec)   p_kst 2.586206e-01   p_cons 3.330218e-04   p_joint 1.449533e-03

Joint ci ratio: 5.730239e-02	ci left: 1.409651e-03	ci right 1.493113e-03	k: 4672	n:3220000
Cons ci ratio: 1.197061e-01	ci left: 3.129876e-04	ci right 3.531373e-04	k: 1071	n:3220000
KS ci ratio: 3.698589e-03	ci left: 2.581516e-01	ci right 2.591085e-01	k: 832788	n:3220000
ZMYM4   3220000 perm   4372 sec   (737 perm/sec)   p_kst 2.586298e-01   p_cons 3.326087e-04   p_joint 1.450932e-03

Joint ci ratio: 5.722286e-02	ci left: 1.409254e-03	ci right 1.492573e-03	k: 4685	n:3230000
Cons ci ratio: 1.195390e-01	ci left: 3.129196e-04	ci right 3.530006e-04	k: 1074	n:3230000
KS ci ratio: 3.692693e-03	ci left: 2.581696e-01	ci right 2.591250e-01	k: 835430	n:3230000
ZMYM4   3230000 perm   4396 sec   (735 perm/sec)   p_kst 2.586471e-01   p_cons 3.325077e-04   p_joint 1.450464e-03

Joint ci ratio: 5.872291e-02	ci left: 1.333119e-03	ci right 1.414073e-03	k: 4449	n:3240000
Cons ci ratio: 1.193172e-01	ci left: 3.131515e-04	ci right 3.531825e-04	k: 1078	n:3240000
KS ci ratio: 3.686760e-03	ci left: 2.581942e-01	ci right 2.591482e-01	k: 838094	n:3240000
ZMYM4   3240000 perm   4421 sec   (733 perm/sec)   p_kst 2.586710e-01   p_cons 3.327160e-04   p_joint 1.373148e-03

Joint ci ratio: 5.867684e-02	ci left: 1.331139e-03	ci right 1.411908e-03	k: 4456	n:3250000
Cons ci ratio: 1.192068e-01	ci left: 3.127850e-04	ci right 3.527295e-04	k: 1080	n:3250000
KS ci ratio: 3.681112e-03	ci left: 2.581920e-01	ci right 2.591445e-01	k: 840671	n:3250000
ZMYM4   3250000 perm   4445 sec   (731 perm/sec)   p_kst 2.586680e-01   p_cons 3.323077e-04   p_joint 1.371077e-03

Joint ci ratio: 5.861772e-02	ci left: 1.329776e-03	ci right 1.410378e-03	k: 4465	n:3260000
Cons ci ratio: 1.191517e-01	ci left: 3.121231e-04	ci right 3.519634e-04	k: 1081	n:3260000
KS ci ratio: 3.675676e-03	ci left: 2.581704e-01	ci right 2.591214e-01	k: 843185	n:3260000
ZMYM4   3260000 perm   4470 sec   (729 perm/sec)   p_kst 2.586457e-01   p_cons 3.315951e-04   p_joint 1.369632e-03

Joint ci ratio: 5.853915e-02	ci left: 1.329325e-03	ci right 1.409788e-03	k: 4477	n:3270000
Cons ci ratio: 1.189869e-01	ci left: 3.120587e-04	ci right 3.518318e-04	k: 1084	n:3270000
KS ci ratio: 3.670181e-03	ci left: 2.581576e-01	ci right 2.591071e-01	k: 845727	n:3270000
ZMYM4   3270000 perm   4495 sec   (728 perm/sec)   p_kst 2.586321e-01   p_cons 3.314985e-04   p_joint 1.369113e-03

Joint ci ratio: 5.861797e-02	ci left: 1.321667e-03	ci right 1.401778e-03	k: 4465	n:3280000
Cons ci ratio: 1.188227e-01	ci left: 3.119947e-04	ci right 3.517010e-04	k: 1087	n:3280000
KS ci ratio: 3.664630e-03	ci left: 2.581533e-01	ci right 2.591014e-01	k: 848297	n:3280000
ZMYM4   3280000 perm   4520 sec   (726 perm/sec)   p_kst 2.586271e-01   p_cons 3.314024e-04   p_joint 1.361280e-03

Joint ci ratio: 5.856559e-02	ci left: 1.320046e-03	ci right 1.399985e-03	k: 4473	n:3290000
Cons ci ratio: 1.187137e-01	ci left: 3.116363e-04	ci right 3.512580e-04	k: 1089	n:3290000
KS ci ratio: 3.659121e-03	ci left: 2.581473e-01	ci right 2.590939e-01	k: 850861	n:3290000
ZMYM4   3290000 perm   4544 sec   (724 perm/sec)   p_kst 2.586204e-01   p_cons 3.310030e-04   p_joint 1.359574e-03

Joint ci ratio: 5.846765e-02	ci left: 1.320525e-03	ci right 1.400354e-03	k: 4488	n:3300000
Cons ci ratio: 1.184965e-01	ci left: 3.118681e-04	ci right 3.514416e-04	k: 1093	n:3300000
KS ci ratio: 3.653564e-03	ci left: 2.581488e-01	ci right 2.590940e-01	k: 853450	n:3300000
ZMYM4   3300000 perm   4570 sec   (722 perm/sec)   p_kst 2.586212e-01   p_cons 3.312121e-04   p_joint 1.360000e-03

Joint ci ratio: 5.840266e-02	ci left: 1.319512e-03	ci right 1.399189e-03	k: 4498	n:3310000
Cons ci ratio: 1.183883e-01	ci left: 3.115122e-04	ci right 3.510020e-04	k: 1095	n:3310000
KS ci ratio: 3.647866e-03	ci left: 2.581679e-01	ci right 2.591117e-01	k: 856097	n:3310000
ZMYM4   3310000 perm   4594 sec   (720 perm/sec)   p_kst 2.586396e-01   p_cons 3.308157e-04   p_joint 1.358912e-03

Joint ci ratio: 5.901676e-02	ci left: 1.287936e-03	ci right 1.366552e-03	k: 4405	n:3320000
Cons ci ratio: 1.179585e-01	ci left: 3.129123e-04	ci right 3.524256e-04	k: 1103	n:3320000
KS ci ratio: 3.642478e-03	ci left: 2.581571e-01	ci right 2.590994e-01	k: 858645	n:3320000
ZMYM4   3320000 perm   4620 sec   (719 perm/sec)   p_kst 2.586280e-01   p_cons 3.322289e-04   p_joint 1.326807e-03

Joint ci ratio: 5.906388e-02	ci left: 1.281998e-03	ci right 1.360315e-03	k: 4398	n:3330000
Cons ci ratio: 1.178518e-01	ci left: 3.125555e-04	ci right 3.519855e-04	k: 1105	n:3330000
KS ci ratio: 3.637105e-03	ci left: 2.581472e-01	ci right 2.590881e-01	k: 861196	n:3330000
ZMYM4   3330000 perm   4645 sec   (717 perm/sec)   p_kst 2.586174e-01   p_cons 3.318318e-04   p_joint 1.320721e-03

Joint ci ratio: 5.626446e-02	ci left: 1.410361e-03	ci right 1.492304e-03	k: 4846	n:3340000
Cons ci ratio: 1.175334e-01	ci left: 3.133633e-04	ci right 3.527809e-04	k: 1111	n:3340000
KS ci ratio: 3.631612e-03	ci left: 2.581526e-01	ci right 2.590921e-01	k: 863798	n:3340000
ZMYM4   3340000 perm   4670 sec   (715 perm/sec)   p_kst 2.586222e-01   p_cons 3.326347e-04   p_joint 1.450898e-03

Joint ci ratio: 5.622974e-02	ci left: 1.407917e-03	ci right 1.489665e-03	k: 4852	n:3350000
Cons ci ratio: 1.171128e-01	ci left: 3.147458e-04	ci right 3.541860e-04	k: 1119	n:3350000
KS ci ratio: 3.625990e-03	ci left: 2.581741e-01	ci right 2.591123e-01	k: 866454	n:3350000
ZMYM4   3350000 perm   4695 sec   (713 perm/sec)   p_kst 2.586430e-01   p_cons 3.340299e-04   p_joint 1.448358e-03

Joint ci ratio: 5.635209e-02	ci left: 1.397564e-03	ci right 1.478894e-03	k: 4831	n:3360000
Cons ci ratio: 1.168003e-01	ci left: 3.155426e-04	ci right 3.549697e-04	k: 1125	n:3360000
KS ci ratio: 3.620482e-03	ci left: 2.581863e-01	ci right 2.591230e-01	k: 869079	n:3360000
ZMYM4   3360000 perm   4721 sec   (712 perm/sec)   p_kst 2.586545e-01   p_cons 3.348214e-04   p_joint 1.437798e-03

Joint ci ratio: 5.776407e-02	ci left: 1.325262e-03	ci right 1.404382e-03	k: 4598	n:3370000
Cons ci ratio: 1.165934e-01	ci left: 3.157586e-04	ci right 3.551380e-04	k: 1129	n:3370000
KS ci ratio: 3.614968e-03	ci left: 2.582017e-01	ci right 2.591370e-01	k: 871715	n:3370000
ZMYM4   3370000 perm   4746 sec   (710 perm/sec)   p_kst 2.586691e-01   p_cons 3.350148e-04   p_joint 1.364392e-03

Joint ci ratio: 5.767634e-02	ci left: 1.325424e-03	ci right 1.404429e-03	k: 4612	n:3380000
Cons ci ratio: 1.164904e-01	ci left: 3.153988e-04	ci right 3.546963e-04	k: 1131	n:3380000
KS ci ratio: 3.609691e-03	ci left: 2.581945e-01	ci right 2.591284e-01	k: 874275	n:3380000
ZMYM4   3380000 perm   4772 sec   (708 perm/sec)   p_kst 2.586612e-01   p_cons 3.346154e-04   p_joint 1.364497e-03

Joint ci ratio: 5.760148e-02	ci left: 1.325003e-03	ci right 1.403877e-03	k: 4624	n:3390000
Cons ci ratio: 1.163363e-01	ci left: 3.153276e-04	ci right 3.545607e-04	k: 1134	n:3390000
KS ci ratio: 3.604440e-03	ci left: 2.581870e-01	ci right 2.591196e-01	k: 876834	n:3390000
ZMYM4   3390000 perm   4797 sec   (707 perm/sec)   p_kst 2.586531e-01   p_cons 3.345133e-04   p_joint 1.364012e-03

Joint ci ratio: 5.234472e-02	ci left: 1.603653e-03	ci right 1.690140e-03	k: 5598	n:3400000
Cons ci ratio: 1.159284e-01	ci left: 3.166848e-04	ci right 3.559391e-04	k: 1142	n:3400000
KS ci ratio: 3.599283e-03	ci left: 2.581720e-01	ci right 2.591032e-01	k: 879367	n:3400000
ZMYM4   3400000 perm   4823 sec   (705 perm/sec)   p_kst 2.586374e-01   p_cons 3.358824e-04   p_joint 1.646471e-03

Joint ci ratio: 5.228875e-02	ci left: 1.602424e-03	ci right 1.688749e-03	k: 5610	n:3410000
Cons ci ratio: 1.158271e-01	ci left: 3.163256e-04	ci right 3.554988e-04	k: 1144	n:3410000
KS ci ratio: 3.593945e-03	ci left: 2.581787e-01	ci right 2.591085e-01	k: 881974	n:3410000
ZMYM4   3410000 perm   4848 sec   (703 perm/sec)   p_kst 2.586434e-01   p_cons 3.354839e-04   p_joint 1.645161e-03

Joint ci ratio: 5.250962e-02	ci left: 1.584175e-03	ci right 1.669889e-03	k: 5563	n:3420000
Cons ci ratio: 1.156757e-01	ci left: 3.162525e-04	ci right 3.553619e-04	k: 1147	n:3420000
KS ci ratio: 3.588647e-03	ci left: 2.581836e-01	ci right 2.591121e-01	k: 884575	n:3420000
ZMYM4   3420000 perm   4873 sec   (702 perm/sec)   p_kst 2.586477e-01   p_cons 3.353801e-04   p_joint 1.626608e-03

Joint ci ratio: 5.277644e-02	ci left: 1.563444e-03	ci right 1.648479e-03	k: 5507	n:3430000
Cons ci ratio: 1.156254e-01	ci left: 3.156136e-04	ci right 3.546258e-04	k: 1148	n:3430000
KS ci ratio: 3.583576e-03	ci left: 2.581667e-01	ci right 2.590938e-01	k: 887101	n:3430000
ZMYM4   3430000 perm   4899 sec   (700 perm/sec)   p_kst 2.586300e-01   p_cons 3.346939e-04   p_joint 1.605539e-03

Joint ci ratio: 4.993317e-02	ci left: 1.743711e-03	ci right 1.833294e-03	k: 6151	n:3440000
Cons ci ratio: 1.155249e-01	ci left: 3.152607e-04	ci right 3.541931e-04	k: 1150	n:3440000
KS ci ratio: 3.578289e-03	ci left: 2.581754e-01	ci right 2.591012e-01	k: 889715	n:3440000
ZMYM4   3440000 perm   4924 sec   (699 perm/sec)   p_kst 2.586381e-01   p_cons 3.343023e-04   p_joint 1.788081e-03

Joint ci ratio: 5.021207e-02	ci left: 1.719193e-03	ci right 1.808024e-03	k: 6083	n:3450000
Cons ci ratio: 1.152748e-01	ci left: 3.157543e-04	ci right 3.546576e-04	k: 1155	n:3450000
KS ci ratio: 3.573038e-03	ci left: 2.581826e-01	ci right 2.591071e-01	k: 892324	n:3450000
ZMYM4   3450000 perm   4950 sec   (697 perm/sec)   p_kst 2.586446e-01   p_cons 3.347826e-04   p_joint 1.763188e-03

Joint ci ratio: 5.057152e-02	ci left: 1.689681e-03	ci right 1.777630e-03	k: 5997	n:3460000
Cons ci ratio: 1.152250e-01	ci left: 3.151224e-04	ci right 3.539299e-04	k: 1156	n:3460000
KS ci ratio: 3.567784e-03	ci left: 2.581927e-01	ci right 2.591158e-01	k: 894943	n:3460000
ZMYM4   3460000 perm   4975 sec   (695 perm/sec)   p_kst 2.586540e-01   p_cons 3.341040e-04   p_joint 1.733237e-03

Joint ci ratio: 5.051263e-02	ci left: 1.688795e-03	ci right 1.776593e-03	k: 6011	n:3470000
Cons ci ratio: 1.151753e-01	ci left: 3.144942e-04	ci right 3.532064e-04	k: 1157	n:3470000
KS ci ratio: 3.562563e-03	ci left: 2.582016e-01	ci right 2.591233e-01	k: 897558	n:3470000
ZMYM4   3470000 perm   5002 sec   (694 perm/sec)   p_kst 2.586622e-01   p_cons 3.334294e-04   p_joint 1.732277e-03

Joint ci ratio: 5.045394e-02	ci left: 1.687914e-03	ci right 1.775562e-03	k: 6025	n:3480000
Cons ci ratio: 1.149769e-01	ci left: 3.147068e-04	ci right 3.533740e-04	k: 1161	n:3480000
KS ci ratio: 3.557423e-03	ci left: 2.582041e-01	ci right 2.591245e-01	k: 900151	n:3480000
ZMYM4   3480000 perm   5028 sec   (692 perm/sec)   p_kst 2.586641e-01   p_cons 3.336207e-04   p_joint 1.731322e-03

Joint ci ratio: 5.058880e-02	ci left: 1.674024e-03	ci right 1.761190e-03	k: 5993	n:3490000
Cons ci ratio: 1.148287e-01	ci left: 3.146399e-04	ci right 3.532457e-04	k: 1164	n:3490000
KS ci ratio: 3.552288e-03	ci left: 2.582085e-01	ci right 2.591277e-01	k: 902751	n:3490000
ZMYM4   3490000 perm   5054 sec   (690 perm/sec)   p_kst 2.586679e-01   p_cons 3.335244e-04   p_joint 1.717192e-03

Joint ci ratio: 5.052563e-02	ci left: 1.673473e-03	ci right 1.760498e-03	k: 6008	n:3500000
Cons ci ratio: 1.145341e-01	ci left: 3.154061e-04	ci right 3.539999e-04	k: 1170	n:3500000
KS ci ratio: 3.547272e-03	ci left: 2.582024e-01	ci right 2.591202e-01	k: 905314	n:3500000
ZMYM4   3500000 perm   5080 sec   (689 perm/sec)   p_kst 2.586611e-01   p_cons 3.342857e-04   p_joint 1.716571e-03

Joint ci ratio: 5.050471e-02	ci left: 1.670112e-03	ci right 1.756924e-03	k: 6013	n:3510000
Cons ci ratio: 1.144365e-01	ci left: 3.150610e-04	ci right 3.535774e-04	k: 1172	n:3510000
KS ci ratio: 3.542312e-03	ci left: 2.581927e-01	ci right 2.591092e-01	k: 907864	n:3510000
ZMYM4   3510000 perm   5107 sec   (687 perm/sec)   p_kst 2.586507e-01   p_cons 3.339031e-04   p_joint 1.713105e-03

Joint ci ratio: 5.044605e-02	ci left: 1.669294e-03	ci right 1.755961e-03	k: 6027	n:3520000
Cons ci ratio: 1.142418e-01	ci left: 3.152698e-04	ci right 3.537418e-04	k: 1176	n:3520000
KS ci ratio: 3.537314e-03	ci left: 2.581892e-01	ci right 2.591044e-01	k: 910436	n:3520000
ZMYM4   3520000 perm   5134 sec   (686 perm/sec)   p_kst 2.586466e-01   p_cons 3.340909e-04   p_joint 1.712216e-03

Joint ci ratio: 5.037507e-02	ci left: 1.669320e-03	ci right 1.755863e-03	k: 6044	n:3530000
Cons ci ratio: 1.141449e-01	ci left: 3.149271e-04	ci right 3.533225e-04	k: 1178	n:3530000
KS ci ratio: 3.532544e-03	ci left: 2.581634e-01	ci right 2.590772e-01	k: 912929	n:3530000
ZMYM4   3530000 perm   5160 sec   (684 perm/sec)   p_kst 2.586201e-01   p_cons 3.337110e-04   p_joint 1.712181e-03

Joint ci ratio: 5.029608e-02	ci left: 1.669905e-03	ci right 1.756338e-03	k: 6063	n:3540000
Cons ci ratio: 1.140482e-01	ci left: 3.145863e-04	ci right 3.529055e-04	k: 1180	n:3540000
KS ci ratio: 3.527661e-03	ci left: 2.581521e-01	ci right 2.590647e-01	k: 915473	n:3540000
ZMYM4   3540000 perm   5187 sec   (683 perm/sec)   p_kst 2.586082e-01   p_cons 3.333333e-04   p_joint 1.712712e-03

Joint ci ratio: 5.023814e-02	ci left: 1.669095e-03	ci right 1.755383e-03	k: 6077	n:3550000
Cons ci ratio: 1.140000e-01	ci left: 3.139738e-04	ci right 3.522011e-04	k: 1181	n:3550000
KS ci ratio: 3.522816e-03	ci left: 2.581389e-01	ci right 2.590502e-01	k: 918010	n:3550000
ZMYM4   3550000 perm   5213 sec   (681 perm/sec)   p_kst 2.585944e-01   p_cons 3.326761e-04   p_joint 1.711831e-03

Joint ci ratio: 5.024240e-02	ci left: 1.664129e-03	ci right 1.750168e-03	k: 6076	n:3560000
Cons ci ratio: 1.135684e-01	ci left: 3.155480e-04	ci right 3.538118e-04	k: 1190	n:3560000
KS ci ratio: 3.517957e-03	ci left: 2.581295e-01	ci right 2.590394e-01	k: 920560	n:3560000
ZMYM4   3560000 perm   5239 sec   (680 perm/sec)   p_kst 2.585843e-01   p_cons 3.342697e-04   p_joint 1.706742e-03

Joint ci ratio: 5.018052e-02	ci left: 1.663616e-03	ci right 1.749520e-03	k: 6091	n:3570000
Cons ci ratio: 1.133781e-01	ci left: 3.157527e-04	ci right 3.539729e-04	k: 1194	n:3570000
KS ci ratio: 3.513037e-03	ci left: 2.581291e-01	ci right 2.590377e-01	k: 923142	n:3570000
ZMYM4   3570000 perm   5266 sec   (678 perm/sec)   p_kst 2.585832e-01   p_cons 3.344538e-04   p_joint 1.706162e-03

Joint ci ratio: 5.009013e-02	ci left: 1.665037e-03	ci right 1.750855e-03	k: 6113	n:3580000
Cons ci ratio: 1.131889e-01	ci left: 3.159564e-04	ci right 3.541331e-04	k: 1198	n:3580000
KS ci ratio: 3.508290e-03	ci left: 2.581119e-01	ci right 2.590193e-01	k: 925664	n:3580000
ZMYM4   3580000 perm   5293 sec   (676 perm/sec)   p_kst 2.585654e-01   p_cons 3.346369e-04   p_joint 1.707542e-03

Joint ci ratio: 5.003699e-02	ci left: 1.663975e-03	ci right 1.749645e-03	k: 6126	n:3590000
Cons ci ratio: 1.130475e-01	ci left: 3.158883e-04	ci right 3.540060e-04	k: 1201	n:3590000
KS ci ratio: 3.503293e-03	ci left: 2.581243e-01	ci right 2.590304e-01	k: 928292	n:3590000
ZMYM4   3590000 perm   5320 sec   (675 perm/sec)   p_kst 2.585772e-01   p_cons 3.345404e-04   p_joint 1.706407e-03

Joint ci ratio: 4.996364e-02	ci left: 1.664291e-03	ci right 1.749847e-03	k: 6144	n:3600000
Cons ci ratio: 1.128131e-01	ci left: 3.163605e-04	ci right 3.544507e-04	k: 1206	n:3600000
KS ci ratio: 3.498499e-03	ci left: 2.581167e-01	ci right 2.590215e-01	k: 930848	n:3600000
ZMYM4   3600000 perm   5347 sec   (673 perm/sec)   p_kst 2.585689e-01   p_cons 3.350000e-04   p_joint 1.706667e-03

Joint ci ratio: 5.136869e-02	ci left: 1.569150e-03	ci right 1.652151e-03	k: 5813	n:3610000
Cons ci ratio: 1.126732e-01	ci left: 3.162918e-04	ci right 3.543233e-04	k: 1209	n:3610000
KS ci ratio: 3.493644e-03	ci left: 2.581179e-01	ci right 2.590215e-01	k: 933436	n:3610000
ZMYM4   3610000 perm   5374 sec   (672 perm/sec)   p_kst 2.585695e-01   p_cons 3.349030e-04   p_joint 1.610249e-03

Joint ci ratio: 4.912999e-02	ci left: 1.712389e-03	ci right 1.798908e-03	k: 6354	n:3620000
Cons ci ratio: 1.126267e-01	ci left: 3.156865e-04	ci right 3.536286e-04	k: 1210	n:3620000
KS ci ratio: 3.488779e-03	ci left: 2.581225e-01	ci right 2.590249e-01	k: 936036	n:3620000
ZMYM4   3620000 perm   5402 sec   (670 perm/sec)   p_kst 2.585735e-01   p_cons 3.342541e-04   p_joint 1.755249e-03

Joint ci ratio: 4.904899e-02	ci left: 1.713386e-03	ci right 1.799809e-03	k: 6375	n:3630000
Cons ci ratio: 1.123949e-01	ci left: 3.161555e-04	ci right 3.540705e-04	k: 1215	n:3630000
KS ci ratio: 3.483867e-03	ci left: 2.581345e-01	ci right 2.590356e-01	k: 938663	n:3630000
ZMYM4   3630000 perm   5430 sec   (669 perm/sec)   p_kst 2.585848e-01   p_cons 3.347107e-04   p_joint 1.756198e-03

Joint ci ratio: 4.906453e-02	ci left: 1.707593e-03	ci right 1.793752e-03	k: 6371	n:3640000
Cons ci ratio: 1.123487e-01	ci left: 3.155539e-04	ci right 3.533803e-04	k: 1216	n:3640000
KS ci ratio: 3.479335e-03	ci left: 2.581069e-01	ci right 2.590067e-01	k: 941146	n:3640000
ZMYM4   3640000 perm   5457 sec   (667 perm/sec)   p_kst 2.585566e-01   p_cons 3.340659e-04   p_joint 1.750275e-03

Joint ci ratio: 4.901074e-02	ci left: 1.706704e-03	ci right 1.792720e-03	k: 6385	n:3650000
Cons ci ratio: 1.122105e-01	ci left: 3.154882e-04	ci right 3.532571e-04	k: 1219	n:3650000
KS ci ratio: 3.474363e-03	ci left: 2.581298e-01	ci right 2.590284e-01	k: 943813	n:3650000
ZMYM4   3650000 perm   5484 sec   (666 perm/sec)   p_kst 2.585789e-01   p_cons 3.339726e-04   p_joint 1.749315e-03

Joint ci ratio: 4.895713e-02	ci left: 1.705819e-03	ci right 1.791694e-03	k: 6399	n:3660000
Cons ci ratio: 1.120270e-01	ci left: 3.156885e-04	ci right 3.534154e-04	k: 1223	n:3660000
KS ci ratio: 3.469660e-03	ci left: 2.581253e-01	ci right 2.590227e-01	k: 946380	n:3660000
ZMYM4   3660000 perm   5512 sec   (664 perm/sec)   p_kst 2.585738e-01   p_cons 3.341530e-04   p_joint 1.748361e-03

Joint ci ratio: 4.889224e-02	ci left: 1.705746e-03	ci right 1.791501e-03	k: 6416	n:3670000
Cons ci ratio: 1.118900e-01	ci left: 3.156228e-04	ci right 3.532928e-04	k: 1226	n:3670000
KS ci ratio: 3.464845e-03	ci left: 2.581352e-01	ci right 2.590314e-01	k: 949000	n:3670000
ZMYM4   3670000 perm   5539 sec   (663 perm/sec)   p_kst 2.585831e-01   p_cons 3.340599e-04   p_joint 1.748229e-03

Joint ci ratio: 4.883522e-02	ci left: 1.705137e-03	ci right 1.790758e-03	k: 6431	n:3680000
Cons ci ratio: 1.116627e-01	ci left: 3.160859e-04	ci right 3.537294e-04	k: 1231	n:3680000
KS ci ratio: 3.460088e-03	ci left: 2.581410e-01	ci right 2.590360e-01	k: 951605	n:3680000
ZMYM4   3680000 perm   5567 sec   (661 perm/sec)   p_kst 2.585883e-01   p_cons 3.345109e-04   p_joint 1.747554e-03

Joint ci ratio: 4.878218e-02	ci left: 1.704264e-03	ci right 1.789746e-03	k: 6445	n:3690000
Cons ci ratio: 1.115270e-01	ci left: 3.160196e-04	ci right 3.536065e-04	k: 1234	n:3690000
KS ci ratio: 3.455362e-03	ci left: 2.581454e-01	ci right 2.590392e-01	k: 954205	n:3690000
ZMYM4   3690000 perm   5595 sec   (660 perm/sec)   p_kst 2.585921e-01   p_cons 3.344173e-04   p_joint 1.746612e-03

Joint ci ratio: 4.902286e-02	ci left: 1.682839e-03	ci right 1.767674e-03	k: 6382	n:3700000
Cons ci ratio: 1.113018e-01	ci left: 3.164792e-04	ci right 3.540398e-04	k: 1239	n:3700000
KS ci ratio: 3.450852e-03	ci left: 2.581280e-01	ci right 2.590205e-01	k: 956724	n:3700000
ZMYM4   3700000 perm   5622 sec   (658 perm/sec)   p_kst 2.585741e-01   p_cons 3.348649e-04   p_joint 1.724865e-03

Joint ci ratio: 4.894622e-02	ci left: 1.683628e-03	ci right 1.768366e-03	k: 6402	n:3710000
Cons ci ratio: 1.111228e-01	ci left: 3.166743e-04	ci right 3.541936e-04	k: 1243	n:3710000
KS ci ratio: 3.446258e-03	ci left: 2.581219e-01	ci right 2.590132e-01	k: 959285	n:3710000
ZMYM4   3710000 perm   5650 sec   (657 perm/sec)   p_kst 2.585674e-01   p_cons 3.350404e-04   p_joint 1.725606e-03

Joint ci ratio: 4.888138e-02	ci left: 1.683616e-03	ci right 1.768238e-03	k: 6419	n:3720000
Cons ci ratio: 1.109445e-01	ci left: 3.168685e-04	ci right 3.543466e-04	k: 1247	n:3720000
KS ci ratio: 3.441607e-03	ci left: 2.581242e-01	ci right 2.590143e-01	k: 961877	n:3720000
ZMYM4   3720000 perm   5678 sec   (655 perm/sec)   p_kst 2.585691e-01   p_cons 3.352151e-04   p_joint 1.725538e-03

Joint ci ratio: 4.880540e-02	ci left: 1.684398e-03	ci right 1.768925e-03	k: 6439	n:3730000
Cons ci ratio: 1.109001e-01	ci left: 3.162796e-04	ci right 3.536721e-04	k: 1248	n:3730000
KS ci ratio: 3.437077e-03	ci left: 2.581152e-01	ci right 2.590042e-01	k: 964427	n:3730000
ZMYM4   3730000 perm   5705 sec   (654 perm/sec)   p_kst 2.585595e-01   p_cons 3.345845e-04   p_joint 1.726273e-03

Joint ci ratio: 4.876002e-02	ci left: 1.683064e-03	ci right 1.767443e-03	k: 6451	n:3740000
Cons ci ratio: 1.107672e-01	ci left: 3.162138e-04	ci right 3.535509e-04	k: 1251	n:3740000
KS ci ratio: 3.432590e-03	ci left: 2.581034e-01	ci right 2.589911e-01	k: 966966	n:3740000
ZMYM4   3740000 perm   5732 sec   (652 perm/sec)   p_kst 2.585471e-01   p_cons 3.344920e-04   p_joint 1.724866e-03

Joint ci ratio: 4.867707e-02	ci left: 1.684371e-03	ci right 1.768668e-03	k: 6473	n:3750000
Cons ci ratio: 1.106788e-01	ci left: 3.158891e-04	ci right 3.531562e-04	k: 1253	n:3750000
KS ci ratio: 3.428190e-03	ci left: 2.580839e-01	ci right 2.589704e-01	k: 969476	n:3750000
ZMYM4   3750000 perm   5760 sec   (651 perm/sec)   p_kst 2.585269e-01   p_cons 3.341333e-04   p_joint 1.726133e-03

Joint ci ratio: 4.860204e-02	ci left: 1.685146e-03	ci right 1.769348e-03	k: 6493	n:3760000
Cons ci ratio: 1.104588e-01	ci left: 3.163420e-04	ci right 3.535835e-04	k: 1258	n:3760000
KS ci ratio: 3.423639e-03	ci left: 2.580833e-01	ci right 2.589687e-01	k: 972057	n:3760000
ZMYM4   3760000 perm   5787 sec   (650 perm/sec)   p_kst 2.585258e-01   p_cons 3.345745e-04   p_joint 1.726862e-03

Joint ci ratio: 4.862466e-02	ci left: 1.679104e-03	ci right 1.763044e-03	k: 6487	n:3770000
Cons ci ratio: 1.102401e-01	ci left: 3.167926e-04	ci right 3.540084e-04	k: 1263	n:3770000
KS ci ratio: 3.419110e-03	ci left: 2.580822e-01	ci right 2.589664e-01	k: 974636	n:3770000
ZMYM4   3770000 perm   5815 sec   (648 perm/sec)   p_kst 2.585241e-01   p_cons 3.350133e-04   p_joint 1.720690e-03

Joint ci ratio: 4.859102e-02	ci left: 1.677014e-03	ci right 1.760790e-03	k: 6496	n:3780000
Cons ci ratio: 1.101095e-01	ci left: 3.167263e-04	ci right 3.538874e-04	k: 1266	n:3780000
KS ci ratio: 3.414629e-03	ci left: 2.580777e-01	ci right 2.589607e-01	k: 977202	n:3780000
ZMYM4   3780000 perm   5843 sec   (647 perm/sec)   p_kst 2.585190e-01   p_cons 3.349206e-04   p_joint 1.718519e-03

Joint ci ratio: 4.851266e-02	ci left: 1.678062e-03	ci right 1.761752e-03	k: 6517	n:3790000
Cons ci ratio: 1.100227e-01	ci left: 3.164038e-04	ci right 3.534959e-04	k: 1268	n:3790000
KS ci ratio: 3.409960e-03	ci left: 2.580965e-01	ci right 2.589783e-01	k: 979856	n:3790000
ZMYM4   3790000 perm   5872 sec   (645 perm/sec)   p_kst 2.585372e-01   p_cons 3.345646e-04   p_joint 1.719525e-03

Joint ci ratio: 4.874177e-02	ci left: 1.657789e-03	ci right 1.740868e-03	k: 6456	n:3800000
Cons ci ratio: 1.098929e-01	ci left: 3.163389e-04	ci right 3.533768e-04	k: 1271	n:3800000
KS ci ratio: 3.405539e-03	ci left: 2.580893e-01	ci right 2.589700e-01	k: 982412	n:3800000
ZMYM4   3800000 perm   5900 sec   (644 perm/sec)   p_kst 2.585295e-01   p_cons 3.344737e-04   p_joint 1.698947e-03

Joint ci ratio: 4.874945e-02	ci left: 1.652919e-03	ci right 1.735768e-03	k: 6454	n:3810000
Cons ci ratio: 1.096346e-01	ci left: 3.170402e-04	ci right 3.540673e-04	k: 1277	n:3810000
KS ci ratio: 3.401070e-03	ci left: 2.580896e-01	ci right 2.589691e-01	k: 984996	n:3810000
ZMYM4   3810000 perm   5928 sec   (643 perm/sec)   p_kst 2.585291e-01   p_cons 3.351706e-04   p_joint 1.693963e-03

Joint ci ratio: 4.868915e-02	ci left: 1.652729e-03	ci right 1.735464e-03	k: 6470	n:3820000
Cons ci ratio: 1.094634e-01	ci left: 3.172287e-04	ci right 3.542163e-04	k: 1281	n:3820000
KS ci ratio: 3.396463e-03	ci left: 2.581073e-01	ci right 2.589857e-01	k: 987647	n:3820000
ZMYM4   3820000 perm   5957 sec   (641 perm/sec)   p_kst 2.585463e-01   p_cons 3.353403e-04   p_joint 1.693717e-03

Joint ci ratio: 4.992147e-02	ci left: 1.567181e-03	ci right 1.647675e-03	k: 6155	n:3830000
Cons ci ratio: 1.094208e-01	ci left: 3.166543e-04	ci right 3.535597e-04	k: 1282	n:3830000
KS ci ratio: 3.392217e-03	ci left: 2.580864e-01	ci right 2.589636e-01	k: 990150	n:3830000
ZMYM4   3830000 perm   5986 sec   (640 perm/sec)   p_kst 2.585248e-01   p_cons 3.347258e-04   p_joint 1.607050e-03

Joint ci ratio: 4.993377e-02	ci left: 1.562328e-03	ci right 1.642593e-03	k: 6152	n:3840000
Cons ci ratio: 1.093356e-01	ci left: 3.163363e-04	ci right 3.531740e-04	k: 1284	n:3840000
KS ci ratio: 3.387749e-03	ci left: 2.580924e-01	ci right 2.589684e-01	k: 992756	n:3840000
ZMYM4   3840000 perm   6014 sec   (639 perm/sec)   p_kst 2.585302e-01   p_cons 3.343750e-04   p_joint 1.602083e-03

Joint ci ratio: 4.986897e-02	ci left: 1.562374e-03	ci right 1.642535e-03	k: 6168	n:3850000
Cons ci ratio: 1.092082e-01	ci left: 3.162726e-04	ci right 3.530572e-04	k: 1287	n:3850000
KS ci ratio: 3.383423e-03	ci left: 2.580843e-01	ci right 2.589592e-01	k: 995308	n:3850000
ZMYM4   3850000 perm   6043 sec   (637 perm/sec)   p_kst 2.585216e-01   p_cons 3.342857e-04   p_joint 1.602078e-03

Joint ci ratio: 4.979636e-02	ci left: 1.562931e-03	ci right 1.643001e-03	k: 6186	n:3860000
Cons ci ratio: 1.090391e-01	ci left: 3.164612e-04	ci right 3.532071e-04	k: 1291	n:3860000
KS ci ratio: 3.379090e-03	ci left: 2.580788e-01	ci right 2.589526e-01	k: 997870	n:3860000
ZMYM4   3860000 perm   6072 sec   (636 perm/sec)   p_kst 2.585155e-01   p_cons 3.344560e-04   p_joint 1.602591e-03

Joint ci ratio: 4.974013e-02	ci left: 1.562465e-03	ci right 1.642418e-03	k: 6200	n:3870000
Cons ci ratio: 1.088706e-01	ci left: 3.166489e-04	ci right 3.533561e-04	k: 1295	n:3870000
KS ci ratio: 3.374638e-03	ci left: 2.580889e-01	ci right 2.589616e-01	k: 1000492	n:3870000
ZMYM4   3870000 perm   6100 sec   (634 perm/sec)   p_kst 2.585251e-01   p_cons 3.346253e-04   p_joint 1.602067e-03

Joint ci ratio: 4.970813e-02	ci left: 1.560475e-03	ci right 1.640272e-03	k: 6208	n:3880000
Cons ci ratio: 1.087030e-01	ci left: 3.168357e-04	ci right 3.535044e-04	k: 1299	n:3880000
KS ci ratio: 3.370221e-03	ci left: 2.580969e-01	ci right 2.589684e-01	k: 1003106	n:3880000
ZMYM4   3880000 perm   6129 sec   (633 perm/sec)   p_kst 2.585325e-01   p_cons 3.347938e-04   p_joint 1.600000e-03

Joint ci ratio: 4.961627e-02	ci left: 1.562302e-03	ci right 1.642042e-03	k: 6231	n:3890000
Cons ci ratio: 1.084945e-01	ci left: 3.172716e-04	ci right 3.539159e-04	k: 1304	n:3890000
KS ci ratio: 3.365811e-03	ci left: 2.581061e-01	ci right 2.589765e-01	k: 1005725	n:3890000
ZMYM4   3890000 perm   6159 sec   (632 perm/sec)   p_kst 2.585411e-01   p_cons 3.352185e-04   p_joint 1.601799e-03

Joint ci ratio: 4.954079e-02	ci left: 1.563108e-03	ci right 1.642763e-03	k: 6250	n:3900000
Cons ci ratio: 1.084115e-01	ci left: 3.169570e-04	ci right 3.535351e-04	k: 1306	n:3900000
KS ci ratio: 3.361471e-03	ci left: 2.581091e-01	ci right 2.589784e-01	k: 1008320	n:3900000
ZMYM4   3900000 perm   6188 sec   (630 perm/sec)   p_kst 2.585436e-01   p_cons 3.348718e-04   p_joint 1.602564e-03

Joint ci ratio: 4.947356e-02	ci left: 1.563404e-03	ci right 1.642964e-03	k: 6267	n:3910000
Cons ci ratio: 1.082047e-01	ci left: 3.173905e-04	ci right 3.539443e-04	k: 1311	n:3910000
KS ci ratio: 3.356945e-03	ci left: 2.581354e-01	ci right 2.590036e-01	k: 1011006	n:3910000
ZMYM4   3910000 perm   6217 sec   (629 perm/sec)   p_kst 2.585693e-01   p_cons 3.352941e-04   p_joint 1.602813e-03

Joint ci ratio: 4.944207e-02	ci left: 1.561431e-03	ci right 1.640838e-03	k: 6275	n:3920000
Cons ci ratio: 1.081224e-01	ci left: 3.170773e-04	ci right 3.535654e-04	k: 1313	n:3920000
KS ci ratio: 3.352403e-03	ci left: 2.581653e-01	ci right 2.590325e-01	k: 1013707	n:3920000
ZMYM4   3920000 perm   6247 sec   (628 perm/sec)   p_kst 2.585987e-01   p_cons 3.349490e-04   p_joint 1.600765e-03

Joint ci ratio: 4.936738e-02	ci left: 1.562233e-03	ci right 1.641558e-03	k: 6294	n:3930000
Cons ci ratio: 1.081224e-01	ci left: 3.162704e-04	ci right 3.526658e-04	k: 1313	n:3930000
KS ci ratio: 3.348053e-03	ci left: 2.581753e-01	ci right 2.590414e-01	k: 1016330	n:3930000
ZMYM4   3930000 perm   6276 sec   (626 perm/sec)   p_kst 2.586081e-01   p_cons 3.340967e-04   p_joint 1.601527e-03

Joint ci ratio: 4.931258e-02	ci left: 1.561777e-03	ci right 1.640988e-03	k: 6308	n:3940000
Cons ci ratio: 1.079992e-01	ci left: 3.162086e-04	ci right 3.525527e-04	k: 1316	n:3940000
KS ci ratio: 3.343744e-03	ci left: 2.581824e-01	ci right 2.590474e-01	k: 1018942	n:3940000
ZMYM4   3940000 perm   6305 sec   (625 perm/sec)   p_kst 2.586147e-01   p_cons 3.340102e-04   p_joint 1.601015e-03

Joint ci ratio: 4.923848e-02	ci left: 1.562575e-03	ci right 1.641703e-03	k: 6327	n:3950000
Cons ci ratio: 1.078356e-01	ci left: 3.163934e-04	ci right 3.527001e-04	k: 1320	n:3950000
KS ci ratio: 3.339580e-03	ci left: 2.581748e-01	ci right 2.590387e-01	k: 1021496	n:3950000
ZMYM4   3950000 perm   6335 sec   (624 perm/sec)   p_kst 2.586066e-01   p_cons 3.341772e-04   p_joint 1.601772e-03

Joint ci ratio: 4.918023e-02	ci left: 1.562370e-03	ci right 1.641392e-03	k: 6342	n:3960000
Cons ci ratio: 1.076727e-01	ci left: 3.165773e-04	ci right 3.528468e-04	k: 1324	n:3960000
KS ci ratio: 3.335332e-03	ci left: 2.581786e-01	ci right 2.590414e-01	k: 1024095	n:3960000
ZMYM4   3960000 perm   6364 sec   (622 perm/sec)   p_kst 2.586098e-01   p_cons 3.343434e-04   p_joint 1.601515e-03

Joint ci ratio: 4.962505e-02	ci left: 1.530322e-03	ci right 1.608443e-03	k: 6229	n:3970000
Cons ci ratio: 1.075105e-01	ci left: 3.167603e-04	ci right 3.529926e-04	k: 1328	n:3970000
KS ci ratio: 3.331116e-03	ci left: 2.581807e-01	ci right 2.590424e-01	k: 1026687	n:3970000
ZMYM4   3970000 perm   6393 sec   (621 perm/sec)   p_kst 2.586113e-01   p_cons 3.345088e-04   p_joint 1.569018e-03

Joint ci ratio: 4.956145e-02	ci left: 1.530447e-03	ci right 1.608472e-03	k: 6245	n:3980000
Cons ci ratio: 1.074297e-01	ci left: 3.164534e-04	ci right 3.526217e-04	k: 1330	n:3980000
KS ci ratio: 3.326981e-03	ci left: 2.581751e-01	ci right 2.590358e-01	k: 1029249	n:3980000
ZMYM4   3980000 perm   6423 sec   (620 perm/sec)   p_kst 2.586053e-01   p_cons 3.341709e-04   p_joint 1.569095e-03

Joint ci ratio: 4.951393e-02	ci left: 1.529582e-03	ci right 1.607485e-03	k: 6257	n:3990000
Cons ci ratio: 1.073088e-01	ci left: 3.163920e-04	ci right 3.525100e-04	k: 1333	n:3990000
KS ci ratio: 3.323013e-03	ci left: 2.581521e-01	ci right 2.590116e-01	k: 1031741	n:3990000
ZMYM4   3990000 perm   6452 sec   (618 perm/sec)   p_kst 2.585817e-01   p_cons 3.340852e-04   p_joint 1.568170e-03

Joint ci ratio: 4.943891e-02	ci left: 1.530449e-03	ci right 1.608275e-03	k: 6276	n:4000000
Cons ci ratio: 1.072285e-01	ci left: 3.160876e-04	ci right 3.521422e-04	k: 1335	n:4000000
KS ci ratio: 3.318759e-03	ci left: 2.581640e-01	ci right 2.590224e-01	k: 1034372	n:4000000
ZMYM4   4000000 perm   6482 sec   (617 perm/sec)   p_kst 2.585930e-01   p_cons 3.337500e-04   p_joint 1.569000e-03

Joint ci ratio: 4.949037e-02	ci left: 1.523430e-03	ci right 1.600983e-03	k: 6263	n:4010000
Cons ci ratio: 1.069885e-01	ci left: 3.167555e-04	ci right 3.528003e-04	k: 1341	n:4010000
KS ci ratio: 3.314633e-03	ci left: 2.581628e-01	ci right 2.590201e-01	k: 1036951	n:4010000
ZMYM4   4010000 perm   6511 sec   (616 perm/sec)   p_kst 2.585913e-01   p_cons 3.344140e-04   p_joint 1.561845e-03

Joint ci ratio: 4.939971e-02	ci left: 1.525292e-03	ci right 1.602792e-03	k: 6286	n:4020000
Cons ci ratio: 1.068691e-01	ci left: 3.166939e-04	ci right 3.526890e-04	k: 1344	n:4020000
KS ci ratio: 3.310534e-03	ci left: 2.581603e-01	ci right 2.590166e-01	k: 1039525	n:4020000
ZMYM4   4020000 perm   6540 sec   (615 perm/sec)   p_kst 2.585883e-01   p_cons 3.343284e-04   p_joint 1.563682e-03

Joint ci ratio: 4.933697e-02	ci left: 1.525428e-03	ci right 1.602834e-03	k: 6302	n:4030000
Cons ci ratio: 1.064739e-01	ci left: 3.183232e-04	ci right 3.543613e-04	k: 1354	n:4030000
KS ci ratio: 3.306449e-03	ci left: 2.581579e-01	ci right 2.590131e-01	k: 1042099	n:4030000
ZMYM4   4030000 perm   6570 sec   (613 perm/sec)   p_kst 2.585854e-01   p_cons 3.359801e-04   p_joint 1.563772e-03

Joint ci ratio: 4.925885e-02	ci left: 1.526542e-03	ci right 1.603879e-03	k: 6322	n:4040000
Cons ci ratio: 1.062390e-01	ci left: 3.189810e-04	ci right 3.550088e-04	k: 1360	n:4040000
KS ci ratio: 3.302435e-03	ci left: 2.581491e-01	ci right 2.590032e-01	k: 1044647	n:4040000
ZMYM4   4040000 perm   6599 sec   (612 perm/sec)   p_kst 2.585760e-01   p_cons 3.366337e-04   p_joint 1.564851e-03

Joint ci ratio: 4.949866e-02	ci left: 1.507896e-03	ci right 1.584671e-03	k: 6261	n:4050000
Cons ci ratio: 1.061610e-01	ci left: 3.186741e-04	ci right 3.546392e-04	k: 1362	n:4050000
KS ci ratio: 3.298383e-03	ci left: 2.581465e-01	ci right 2.589996e-01	k: 1047220	n:4050000
ZMYM4   4050000 perm   6629 sec   (611 perm/sec)   p_kst 2.585728e-01   p_cons 3.362963e-04   p_joint 1.545926e-03

Joint ci ratio: 4.942372e-02	ci left: 1.508804e-03	ci right 1.585506e-03	k: 6280	n:4060000
Cons ci ratio: 1.060056e-01	ci left: 3.188482e-04	ci right 3.547771e-04	k: 1366	n:4060000
KS ci ratio: 3.294438e-03	ci left: 2.581330e-01	ci right 2.589851e-01	k: 1049749	n:4060000
ZMYM4   4060000 perm   6659 sec   (610 perm/sec)   p_kst 2.585589e-01   p_cons 3.364532e-04   p_joint 1.546798e-03

Joint ci ratio: 4.970999e-02	ci left: 1.487625e-03	ci right 1.563701e-03	k: 6208	n:4070000
Cons ci ratio: 1.058894e-01	ci left: 3.187824e-04	ci right 3.546620e-04	k: 1369	n:4070000
KS ci ratio: 3.290535e-03	ci left: 2.581165e-01	ci right 2.589674e-01	k: 1052265	n:4070000
ZMYM4   4070000 perm   6689 sec   (608 perm/sec)   p_kst 2.585418e-01   p_cons 3.363636e-04   p_joint 1.525307e-03

Joint ci ratio: 4.849328e-02	ci left: 1.560239e-03	ci right 1.638020e-03	k: 6523	n:4080000
Cons ci ratio: 1.055433e-01	ci left: 3.201486e-04	ci right 3.560569e-04	k: 1378	n:4080000
KS ci ratio: 3.286617e-03	ci left: 2.581034e-01	ci right 2.589533e-01	k: 1054795	n:4080000
ZMYM4   4080000 perm   6718 sec   (607 perm/sec)   p_kst 2.585282e-01   p_cons 3.377451e-04   p_joint 1.598775e-03

Joint ci ratio: 4.843392e-02	ci left: 1.560289e-03	ci right 1.637975e-03	k: 6539	n:4090000
Cons ci ratio: 1.055050e-01	ci left: 3.196039e-04	ci right 3.554373e-04	k: 1379	n:4090000
KS ci ratio: 3.282685e-03	ci left: 2.580936e-01	ci right 2.589425e-01	k: 1057338	n:4090000
ZMYM4   4090000 perm   6748 sec   (606 perm/sec)   p_kst 2.585178e-01   p_cons 3.371638e-04   p_joint 1.598778e-03

Joint ci ratio: 4.838218e-02	ci left: 1.559856e-03	ci right 1.637436e-03	k: 6553	n:4100000
Cons ci ratio: 1.053525e-01	ci left: 3.197743e-04	ci right 3.555717e-04	k: 1383	n:4100000
KS ci ratio: 3.278769e-03	ci left: 2.580836e-01	ci right 2.589314e-01	k: 1059880	n:4100000
ZMYM4   4100000 perm   6778 sec   (605 perm/sec)   p_kst 2.585073e-01   p_cons 3.373171e-04   p_joint 1.598293e-03

Joint ci ratio: 4.831586e-02	ci left: 1.560388e-03	ci right 1.637884e-03	k: 6571	n:4110000
Cons ci ratio: 1.051248e-01	ci left: 3.204177e-04	ci right 3.562048e-04	k: 1389	n:4110000
KS ci ratio: 3.274911e-03	ci left: 2.580685e-01	ci right 2.589153e-01	k: 1062401	n:4110000
ZMYM4   4110000 perm   6808 sec   (604 perm/sec)   p_kst 2.584917e-01   p_cons 3.379562e-04   p_joint 1.598783e-03

Joint ci ratio: 4.822417e-02	ci left: 1.562595e-03	ci right 1.640050e-03	k: 6596	n:4120000
Cons ci ratio: 1.049362e-01	ci left: 3.208217e-04	ci right 3.565857e-04	k: 1394	n:4120000
KS ci ratio: 3.271025e-03	ci left: 2.580584e-01	ci right 2.589041e-01	k: 1064942	n:4120000
ZMYM4   4120000 perm   6838 sec   (603 perm/sec)   p_kst 2.584811e-01   p_cons 3.383495e-04   p_joint 1.600971e-03

Joint ci ratio: 4.815851e-02	ci left: 1.563118e-03	ci right 1.640490e-03	k: 6614	n:4130000
Cons ci ratio: 1.047861e-01	ci left: 3.209880e-04	ci right 3.567162e-04	k: 1398	n:4130000
KS ci ratio: 3.267023e-03	ci left: 2.580635e-01	ci right 2.589082e-01	k: 1067546	n:4130000
ZMYM4   4130000 perm   6868 sec   (601 perm/sec)   p_kst 2.584857e-01   p_cons 3.384988e-04   p_joint 1.601453e-03

Joint ci ratio: 4.648193e-02	ci left: 1.675108e-03	ci right 1.755060e-03	k: 7099	n:4140000
Cons ci ratio: 1.045993e-01	ci left: 3.213888e-04	ci right 3.570939e-04	k: 1403	n:4140000
KS ci ratio: 3.262966e-03	ci left: 2.580769e-01	ci right 2.589206e-01	k: 1070184	n:4140000
ZMYM4   4140000 perm   6899 sec   (600 perm/sec)   p_kst 2.584986e-01   p_cons 3.388889e-04   p_joint 1.714734e-03

Joint ci ratio: 4.641005e-02	ci left: 1.676311e-03	ci right 1.756194e-03	k: 7121	n:4150000
Cons ci ratio: 1.044135e-01	ci left: 3.217877e-04	ci right 3.574698e-04	k: 1408	n:4150000
KS ci ratio: 3.258967e-03	ci left: 2.580851e-01	ci right 2.589278e-01	k: 1072801	n:4150000
ZMYM4   4150000 perm   6930 sec   (599 perm/sec)   p_kst 2.585063e-01   p_cons 3.392771e-04   p_joint 1.715904e-03

Joint ci ratio: 4.634501e-02	ci left: 1.677034e-03	ci right 1.756835e-03	k: 7141	n:4160000
Cons ci ratio: 1.042287e-01	ci left: 3.221847e-04	ci right 3.578437e-04	k: 1413	n:4160000
KS ci ratio: 3.255154e-03	ci left: 2.580731e-01	ci right 2.589147e-01	k: 1075334	n:4160000
ZMYM4   4160000 perm   6960 sec   (598 perm/sec)   p_kst 2.584938e-01   p_cons 3.396635e-04   p_joint 1.716587e-03

Joint ci ratio: 4.629643e-02	ci left: 1.676568e-03	ci right 1.756261e-03	k: 7156	n:4170000
Cons ci ratio: 1.041551e-01	ci left: 3.218792e-04	ci right 3.574777e-04	k: 1415	n:4170000
KS ci ratio: 3.251382e-03	ci left: 2.580578e-01	ci right 2.588984e-01	k: 1077853	n:4170000
ZMYM4   4170000 perm   6991 sec   (596 perm/sec)   p_kst 2.584779e-01   p_cons 3.393285e-04   p_joint 1.716067e-03

Joint ci ratio: 4.675353e-02	ci left: 1.639689e-03	ci right 1.718420e-03	k: 7017	n:4180000
Cons ci ratio: 1.040450e-01	ci left: 3.218082e-04	ci right 3.573589e-04	k: 1418	n:4180000
KS ci ratio: 3.247488e-03	ci left: 2.580586e-01	ci right 2.588982e-01	k: 1080439	n:4180000
ZMYM4   4180000 perm   7022 sec   (595 perm/sec)   p_kst 2.584782e-01   p_cons 3.392344e-04   p_joint 1.678708e-03

Joint ci ratio: 4.670366e-02	ci left: 1.639314e-03	ci right 1.717940e-03	k: 7032	n:4190000
Cons ci ratio: 1.039352e-01	ci left: 3.217375e-04	ci right 3.572406e-04	k: 1421	n:4190000
KS ci ratio: 3.243681e-03	ci left: 2.580508e-01	ci right 2.588894e-01	k: 1082989	n:4190000
ZMYM4   4190000 perm   7054 sec   (594 perm/sec)   p_kst 2.584699e-01   p_cons 3.391408e-04   p_joint 1.678282e-03

Joint ci ratio: 4.727961e-02	ci left: 1.595409e-03	ci right 1.672899e-03	k: 6862	n:4200000
Cons ci ratio: 1.038987e-01	ci left: 3.212034e-04	ci right 3.566343e-04	k: 1422	n:4200000
KS ci ratio: 3.239835e-03	ci left: 2.580492e-01	ci right 2.588868e-01	k: 1085565	n:4200000
ZMYM4   4200000 perm   7084 sec   (593 perm/sec)   p_kst 2.584679e-01   p_cons 3.385714e-04   p_joint 1.633810e-03

Joint ci ratio: 4.734193e-02	ci left: 1.587395e-03	ci right 1.664600e-03	k: 6844	n:4210000
Cons ci ratio: 1.036078e-01	ci left: 3.222913e-04	ci right 3.577367e-04	k: 1430	n:4210000
KS ci ratio: 3.235906e-03	ci left: 2.580590e-01	ci right 2.588957e-01	k: 1088189	n:4210000
ZMYM4   4210000 perm   7115 sec   (592 perm/sec)   p_kst 2.584772e-01   p_cons 3.396675e-04   p_joint 1.625653e-03

Joint ci ratio: 4.728670e-02	ci left: 1.587380e-03	ci right 1.664492e-03	k: 6860	n:4220000
Cons ci ratio: 1.034272e-01	ci left: 3.226818e-04	ci right 3.581045e-04	k: 1435	n:4220000
KS ci ratio: 3.231989e-03	ci left: 2.580691e-01	ci right 2.589047e-01	k: 1090814	n:4220000
ZMYM4   4220000 perm   7147 sec   (590 perm/sec)   p_kst 2.584867e-01   p_cons 3.400474e-04   p_joint 1.625592e-03

Joint ci ratio: 4.413225e-02	ci left: 1.820612e-03	ci right 1.903004e-03	k: 7874	n:4230000
Cons ci ratio: 1.032835e-01	ci left: 3.228401e-04	ci right 3.582280e-04	k: 1439	n:4230000
KS ci ratio: 3.228230e-03	ci left: 2.580620e-01	ci right 2.588967e-01	k: 1093367	n:4230000
ZMYM4   4230000 perm   7179 sec   (589 perm/sec)   p_kst 2.584792e-01   p_cons 3.401891e-04   p_joint 1.861466e-03

Joint ci ratio: 4.427905e-02	ci left: 1.804189e-03	ci right 1.886117e-03	k: 7822	n:4240000
Cons ci ratio: 1.031046e-01	ci left: 3.232275e-04	ci right 3.585928e-04	k: 1444	n:4240000
KS ci ratio: 3.224428e-03	ci left: 2.580616e-01	ci right 2.588953e-01	k: 1095948	n:4240000
ZMYM4   4240000 perm   7211 sec   (588 perm/sec)   p_kst 2.584783e-01   p_cons 3.405660e-04   p_joint 1.844811e-03

Joint ci ratio: 4.461174e-02	ci left: 1.772952e-03	ci right 1.854082e-03	k: 7706	n:4250000
Cons ci ratio: 1.028557e-01	ci left: 3.240716e-04	ci right 3.594385e-04	k: 1451	n:4250000
KS ci ratio: 3.220652e-03	ci left: 2.580598e-01	ci right 2.588925e-01	k: 1098523	n:4250000
ZMYM4   4250000 perm   7243 sec   (587 perm/sec)   p_kst 2.584760e-01   p_cons 3.414118e-04   p_joint 1.813176e-03

Joint ci ratio: 4.455107e-02	ci left: 1.773665e-03	ci right 1.854714e-03	k: 7727	n:4260000
Cons ci ratio: 1.027143e-01	ci left: 3.242257e-04	ci right 3.595578e-04	k: 1455	n:4260000
KS ci ratio: 3.216917e-03	ci left: 2.580547e-01	ci right 2.588864e-01	k: 1101084	n:4260000
ZMYM4   4260000 perm   7275 sec   (586 perm/sec)   p_kst 2.584704e-01   p_cons 3.415493e-04   p_joint 1.813850e-03

Joint ci ratio: 4.450504e-02	ci left: 1.773217e-03	ci right 1.854159e-03	k: 7743	n:4270000
Cons ci ratio: 1.026087e-01	ci left: 3.241510e-04	ci right 3.594364e-04	k: 1458	n:4270000
KS ci ratio: 3.213010e-03	ci left: 2.580717e-01	ci right 2.589024e-01	k: 1103739	n:4270000
ZMYM4   4270000 perm   7307 sec   (584 perm/sec)   p_kst 2.584869e-01   p_cons 3.414520e-04   p_joint 1.813349e-03

Joint ci ratio: 4.546201e-02	ci left: 1.694684e-03	ci right 1.773749e-03	k: 7421	n:4280000
Cons ci ratio: 1.025385e-01	ci left: 3.238489e-04	ci right 3.590758e-04	k: 1460	n:4280000
KS ci ratio: 3.209314e-03	ci left: 2.580650e-01	ci right 2.588947e-01	k: 1106293	n:4280000
ZMYM4   4280000 perm   7339 sec   (583 perm/sec)   p_kst 2.584797e-01   p_cons 3.411215e-04   p_joint 1.733879e-03

Joint ci ratio: 4.554208e-02	ci left: 1.684742e-03	ci right 1.763485e-03	k: 7395	n:4290000
Cons ci ratio: 1.024333e-01	ci left: 3.237754e-04	ci right 3.589560e-04	k: 1463	n:4290000
KS ci ratio: 3.205593e-03	ci left: 2.580629e-01	ci right 2.588917e-01	k: 1108867	n:4290000
ZMYM4   4290000 perm   7371 sec   (582 perm/sec)   p_kst 2.584772e-01   p_cons 3.410256e-04   p_joint 1.723776e-03

Joint ci ratio: 4.548983e-02	ci left: 1.684733e-03	ci right 1.763383e-03	k: 7412	n:4300000
Cons ci ratio: 1.022937e-01	ci left: 3.239288e-04	ci right 3.590753e-04	k: 1467	n:4300000
KS ci ratio: 3.201670e-03	ci left: 2.580865e-01	ci right 2.589143e-01	k: 1111551	n:4300000
ZMYM4   4300000 perm   7402 sec   (581 perm/sec)   p_kst 2.585002e-01   p_cons 3.411628e-04   p_joint 1.723721e-03

Joint ci ratio: 4.541328e-02	ci left: 1.686558e-03	ci right 1.765158e-03	k: 7437	n:4310000
Cons ci ratio: 1.019815e-01	ci left: 3.252121e-04	ci right 3.603837e-04	k: 1476	n:4310000
KS ci ratio: 3.197946e-03	ci left: 2.580879e-01	ci right 2.589148e-01	k: 1114140	n:4310000
ZMYM4   4310000 perm   7434 sec   (580 perm/sec)   p_kst 2.585012e-01   p_cons 3.424594e-04   p_joint 1.725522e-03

Joint ci ratio: 4.564137e-02	ci left: 1.665719e-03	ci right 1.743747e-03	k: 7363	n:4320000
Cons ci ratio: 1.018781e-01	ci left: 3.251360e-04	ci right 3.602616e-04	k: 1479	n:4320000
KS ci ratio: 3.194233e-03	ci left: 2.580895e-01	ci right 2.589154e-01	k: 1116730	n:4320000
ZMYM4   4320000 perm   7466 sec   (579 perm/sec)   p_kst 2.585023e-01   p_cons 3.423611e-04   p_joint 1.704398e-03

Joint ci ratio: 4.558568e-02	ci left: 1.665982e-03	ci right 1.743925e-03	k: 7381	n:4330000
Cons ci ratio: 1.017064e-01	ci left: 3.255105e-04	ci right 3.606137e-04	k: 1484	n:4330000
KS ci ratio: 3.190629e-03	ci left: 2.580796e-01	ci right 2.589046e-01	k: 1119270	n:4330000
ZMYM4   4330000 perm   7498 sec   (578 perm/sec)   p_kst 2.584919e-01   p_cons 3.427252e-04   p_joint 1.704619e-03

Joint ci ratio: 4.554870e-02	ci left: 1.664877e-03	ci right 1.742703e-03	k: 7393	n:4340000
Cons ci ratio: 1.016038e-01	ci left: 3.254341e-04	ci right 3.604916e-04	k: 1487	n:4340000
KS ci ratio: 3.186980e-03	ci left: 2.580766e-01	ci right 2.589006e-01	k: 1121840	n:4340000
ZMYM4   4340000 perm   7530 sec   (576 perm/sec)   p_kst 2.584885e-01   p_cons 3.426267e-04   p_joint 1.703456e-03

Joint ci ratio: 4.549951e-02	ci left: 1.664686e-03	ci right 1.742417e-03	k: 7409	n:4350000
Cons ci ratio: 1.015016e-01	ci left: 3.253581e-04	ci right 3.603700e-04	k: 1490	n:4350000
KS ci ratio: 3.183310e-03	ci left: 2.580776e-01	ci right 2.589007e-01	k: 1124427	n:4350000
ZMYM4   4350000 perm   7562 sec   (575 perm/sec)   p_kst 2.584890e-01   p_cons 3.425287e-04   p_joint 1.703218e-03

Joint ci ratio: 4.545660e-02	ci left: 1.664042e-03	ci right 1.741668e-03	k: 7423	n:4360000
Cons ci ratio: 1.015016e-01	ci left: 3.246119e-04	ci right 3.595435e-04	k: 1490	n:4360000
KS ci ratio: 3.179709e-03	ci left: 2.580719e-01	ci right 2.588940e-01	k: 1126985	n:4360000
ZMYM4   4360000 perm   7594 sec   (574 perm/sec)   p_kst 2.584828e-01   p_cons 3.417431e-04   p_joint 1.702523e-03

Joint ci ratio: 4.539854e-02	ci left: 1.664533e-03	ci right 1.742080e-03	k: 7442	n:4370000
Cons ci ratio: 1.013657e-01	ci left: 3.247612e-04	ci right 3.596593e-04	k: 1494	n:4370000
KS ci ratio: 3.175937e-03	ci left: 2.580882e-01	ci right 2.589094e-01	k: 1129639	n:4370000
ZMYM4   4370000 perm   7627 sec   (573 perm/sec)   p_kst 2.584986e-01   p_cons 3.418764e-04   p_joint 1.702975e-03

Joint ci ratio: 4.534678e-02	ci left: 1.664570e-03	ci right 1.742028e-03	k: 7459	n:4380000
Cons ci ratio: 1.011966e-01	ci left: 3.251324e-04	ci right 3.600086e-04	k: 1499	n:4380000
KS ci ratio: 3.172308e-03	ci left: 2.580889e-01	ci right 2.589091e-01	k: 1132225	n:4380000
ZMYM4   4380000 perm   7660 sec   (572 perm/sec)   p_kst 2.584989e-01   p_cons 3.422374e-04   p_joint 1.702968e-03

Joint ci ratio: 4.528913e-02	ci left: 1.665057e-03	ci right 1.742436e-03	k: 7478	n:4390000
Cons ci ratio: 1.010620e-01	ci left: 3.252799e-04	ci right 3.601227e-04	k: 1503	n:4390000
KS ci ratio: 3.168638e-03	ci left: 2.580960e-01	ci right 2.589153e-01	k: 1134839	n:4390000
ZMYM4   4390000 perm   7693 sec   (571 perm/sec)   p_kst 2.585055e-01   p_cons 3.423690e-04   p_joint 1.703417e-03

Joint ci ratio: 4.525287e-02	ci left: 1.663969e-03	ci right 1.741234e-03	k: 7490	n:4400000
Cons ci ratio: 1.009278e-01	ci left: 3.254267e-04	ci right 3.602363e-04	k: 1507	n:4400000
KS ci ratio: 3.165039e-03	ci left: 2.580960e-01	ci right 2.589144e-01	k: 1137422	n:4400000
ZMYM4   4400000 perm   7726 sec   (570 perm/sec)   p_kst 2.585050e-01   p_cons 3.425000e-04   p_joint 1.702273e-03

Joint ci ratio: 4.521971e-02	ci left: 1.662662e-03	ci right 1.739809e-03	k: 7501	n:4410000
Cons ci ratio: 1.008610e-01	ci left: 3.251309e-04	ci right 3.598844e-04	k: 1509	n:4410000
KS ci ratio: 3.161469e-03	ci left: 2.580939e-01	ci right 2.589114e-01	k: 1139996	n:4410000
ZMYM4   4410000 perm   7759 sec   (568 perm/sec)   p_kst 2.585025e-01   p_cons 3.421769e-04   p_joint 1.700907e-03

Joint ci ratio: 4.534713e-02	ci left: 1.649505e-03	ci right 1.726263e-03	k: 7459	n:4420000
Cons ci ratio: 1.007943e-01	ci left: 3.248364e-04	ci right 3.595341e-04	k: 1511	n:4420000
KS ci ratio: 3.157895e-03	ci left: 2.580939e-01	ci right 2.589105e-01	k: 1142579	n:4420000
ZMYM4   4420000 perm   7792 sec   (567 perm/sec)   p_kst 2.585020e-01   p_cons 3.418552e-04   p_joint 1.687557e-03

Joint ci ratio: 4.530769e-02	ci left: 1.648683e-03	ci right 1.725334e-03	k: 7472	n:4430000
Cons ci ratio: 1.005948e-01	ci left: 3.254234e-04	ci right 3.601110e-04	k: 1517	n:4430000
KS ci ratio: 3.154260e-03	ci left: 2.581027e-01	ci right 2.589184e-01	k: 1145201	n:4430000
ZMYM4   4430000 perm   7825 sec   (566 perm/sec)   p_kst 2.585104e-01   p_cons 3.424379e-04   p_joint 1.686682e-03

Joint ci ratio: 4.525322e-02	ci left: 1.648978e-03	ci right 1.725548e-03	k: 7490	n:4440000
Cons ci ratio: 1.004956e-01	ci left: 3.253491e-04	ci right 3.599926e-04	k: 1520	n:4440000
KS ci ratio: 3.150502e-03	ci left: 2.581279e-01	ci right 2.589427e-01	k: 1147896	n:4440000
ZMYM4   4440000 perm   7857 sec   (565 perm/sec)   p_kst 2.585351e-01   p_cons 3.423423e-04   p_joint 1.686937e-03

Joint ci ratio: 4.521100e-02	ci left: 1.648383e-03	ci right 1.724852e-03	k: 7504	n:4450000
Cons ci ratio: 1.004626e-01	ci left: 3.248371e-04	ci right 3.594140e-04	k: 1521	n:4450000
KS ci ratio: 3.147105e-03	ci left: 2.581108e-01	ci right 2.589246e-01	k: 1150403	n:4450000
ZMYM4   4450000 perm   7890 sec   (564 perm/sec)   p_kst 2.585175e-01   p_cons 3.417978e-04   p_joint 1.686292e-03

Joint ci ratio: 4.515988e-02	ci left: 1.648456e-03	ci right 1.724839e-03	k: 7521	n:4460000
Cons ci ratio: 1.002651e-01	ci left: 3.254203e-04	ci right 3.599872e-04	k: 1527	n:4460000
KS ci ratio: 3.143454e-03	ci left: 2.581260e-01	ci right 2.589389e-01	k: 1153054	n:4460000
ZMYM4   4460000 perm   7922 sec   (563 perm/sec)   p_kst 2.585323e-01   p_cons 3.423767e-04   p_joint 1.686323e-03

Joint ci ratio: 4.509396e-02	ci left: 1.649634e-03	ci right 1.725958e-03	k: 7543	n:4470000
Cons ci ratio: 1.001341e-01	ci left: 3.255647e-04	ci right 3.600991e-04	k: 1531	n:4470000
KS ci ratio: 3.140070e-03	ci left: 2.581101e-01	ci right 2.589220e-01	k: 1155566	n:4470000
ZMYM4   4470000 perm   7955 sec   (562 perm/sec)   p_kst 2.585159e-01   p_cons 3.425056e-04   p_joint 1.687472e-03

Joint ci ratio: 4.504622e-02	ci left: 1.649483e-03	ci right 1.725717e-03	k: 7559	n:4480000
Cons ci ratio: 9.997112e-02	ci left: 3.259261e-04	ci right 3.604393e-04	k: 1536	n:4480000
KS ci ratio: 3.136516e-03	ci left: 2.581163e-01	ci right 2.589273e-01	k: 1158177	n:4480000
ZMYM4   4480000 perm   7987 sec   (561 perm/sec)   p_kst 2.585217e-01   p_cons 3.428571e-04   p_joint 1.687277e-03

Outputting figure to mutsig2_images.part000000000194/ZMYM4.6_4767_4480000_0.25852_0.00034286_0.0016873.png
                gene_name: ZMYM4
               theta_stop: 0.100 
                    nperm: 4480000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.00034 
      ci_cons_bounds_left: 0.00033 
     ci_cons_bounds_right: 0.00036 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0017 

Current progress: 34 percent done.
ZFAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
KS ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
ZFAT   10000 perm   2 sec   (5558 perm/sec)   p_kst 8.882000e-01   p_cons 4.124000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFAT.5_3796_10000_0.8882_0.4124_1.png
                gene_name: ZFAT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ZFP64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
Cons ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
KS ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
ZFP64   10000 perm   2 sec   (5595 perm/sec)   p_kst 5.069000e-01   p_cons 6.531000e-01   p_joint 7.271000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP64.5_3261_10000_0.5069_0.6531_0.7271.png
                gene_name: ZFP64
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 37 percent done.
ZFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
KS ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
ZFR   10000 perm   2 sec   (6015 perm/sec)   p_kst 3.846000e-01   p_cons 7.185000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000194/ZFR.5_3305_10000_0.3846_0.7185_0.513.png
                gene_name: ZFR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
ZFYVE9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
ZFYVE9   10000 perm   2 sec   (5584 perm/sec)   p_kst 9.100000e-03   p_cons 9.536000e-01   p_joint 3.490000e-02

Joint ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
Cons ci ratio: 6.040631e-03	ci left: 9.517260e-01	ci right 9.575409e-01	k: 19094	n:20000
KS ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
ZFYVE9   20000 perm   4 sec   (5073 perm/sec)   p_kst 9.200000e-03   p_cons 9.547000e-01   p_joint 3.725000e-02

Joint ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
Cons ci ratio: 4.854964e-03	ci left: 9.536521e-01	ci right 9.583257e-01	k: 28681	n:30000
KS ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
ZFYVE9   30000 perm   6 sec   (4884 perm/sec)   p_kst 9.133333e-03   p_cons 9.560333e-01   p_joint 2.973333e-02

Joint ci ratio: 1.268976e-01	ci left: 2.181961e-02	ci right 2.480015e-02	k: 931	n:40000
Cons ci ratio: 4.313410e-03	ci left: 9.517227e-01	ci right 9.558611e-01	k: 38153	n:40000
KS ci ratio: 2.048084e-01	ci left: 8.145234e-03	ci right 1.002707e-02	k: 362	n:40000
ZFYVE9   40000 perm   8 sec   (4755 perm/sec)   p_kst 9.050000e-03   p_cons 9.538250e-01   p_joint 2.327500e-02

Joint ci ratio: 1.187177e-01	ci left: 2.007172e-02	ci right 2.262427e-02	k: 1066	n:50000
Cons ci ratio: 3.864205e-03	ci left: 9.518012e-01	ci right 9.555059e-01	k: 47684	n:50000
KS ci ratio: 1.835442e-01	ci left: 8.209900e-03	ci right 9.887844e-03	k: 451	n:50000
ZFYVE9   50000 perm   11 sec   (4648 perm/sec)   p_kst 9.020000e-03   p_cons 9.536800e-01   p_joint 2.132000e-02

Joint ci ratio: 1.095782e-01	ci left: 1.973783e-02	ci right 2.204217e-02	k: 1252	n:60000
Cons ci ratio: 3.329117e-03	ci left: 9.569074e-01	ci right 9.601147e-01	k: 57512	n:60000
KS ci ratio: 1.634076e-01	ci left: 8.723294e-03	ci right 1.029137e-02	k: 569	n:60000
ZFYVE9   60000 perm   13 sec   (4557 perm/sec)   p_kst 9.483333e-03   p_cons 9.585333e-01   p_joint 2.086667e-02

Joint ci ratio: 1.160855e-01	ci left: 1.509732e-02	ci right 1.697168e-02	k: 1121	n:70000
Cons ci ratio: 3.106006e-03	ci left: 9.564006e-01	ci right 9.593898e-01	k: 67054	n:70000
KS ci ratio: 1.531574e-01	ci left: 8.560956e-03	ci right 9.994450e-03	k: 648	n:70000
ZFYVE9   70000 perm   16 sec   (4475 perm/sec)   p_kst 9.257143e-03   p_cons 9.579143e-01   p_joint 1.601429e-02

Joint ci ratio: 8.926601e-02	ci left: 2.248579e-02	ci right 2.459896e-02	k: 1882	n:80000
Cons ci ratio: 2.900008e-03	ci left: 9.566505e-01	ci right 9.594411e-01	k: 76645	n:80000
KS ci ratio: 1.427532e-01	ci left: 8.670562e-03	ci right 1.001538e-02	k: 746	n:80000
ZFYVE9   80000 perm   18 sec   (4397 perm/sec)   p_kst 9.325000e-03   p_cons 9.580625e-01   p_joint 2.352500e-02

Joint ci ratio: 9.828789e-02	ci left: 1.651240e-02	ci right 1.823003e-02	k: 1562	n:90000
Cons ci ratio: 2.745294e-03	ci left: 9.563985e-01	ci right 9.590386e-01	k: 86196	n:90000
KS ci ratio: 1.340568e-01	ci left: 8.779862e-03	ci right 1.005206e-02	k: 846	n:90000
ZFYVE9   90000 perm   21 sec   (4322 perm/sec)   p_kst 9.400000e-03   p_cons 9.577333e-01   p_joint 1.735556e-02

Joint ci ratio: 8.639854e-02	ci left: 1.929783e-02	ci right 2.105015e-02	k: 2016	n:100000
Cons ci ratio: 2.593862e-03	ci left: 9.567993e-01	ci right 9.592941e-01	k: 95806	n:100000
KS ci ratio: 1.278035e-01	ci left: 8.724026e-03	ci right 9.924693e-03	k: 931	n:100000
ZFYVE9   100000 perm   24 sec   (4254 perm/sec)   p_kst 9.310000e-03   p_cons 9.580600e-01   p_joint 2.016000e-02

Joint ci ratio: 8.777380e-02	ci left: 1.702681e-02	ci right 1.859876e-02	k: 1958	n:110000
Cons ci ratio: 2.472457e-03	ci left: 9.568809e-01	ci right 9.592586e-01	k: 105389	n:110000
KS ci ratio: 1.224115e-01	ci left: 8.670661e-03	ci right 9.809985e-03	k: 1015	n:110000
ZFYVE9   110000 perm   26 sec   (4188 perm/sec)   p_kst 9.227273e-03   p_cons 9.580818e-01   p_joint 1.780000e-02

Joint ci ratio: 8.497480e-02	ci left: 1.668402e-02	ci right 1.817276e-02	k: 2090	n:120000
Cons ci ratio: 2.372287e-03	ci left: 9.567569e-01	ci right 9.590375e-01	k: 114949	n:120000
KS ci ratio: 1.169535e-01	ci left: 8.732262e-03	ci right 9.824984e-03	k: 1112	n:120000
ZFYVE9   120000 perm   29 sec   (4122 perm/sec)   p_kst 9.266667e-03   p_cons 9.579083e-01   p_joint 1.741667e-02

Joint ci ratio: 8.056645e-02	ci left: 1.716356e-02	ci right 1.861191e-02	k: 2324	n:130000
Cons ci ratio: 2.278354e-03	ci left: 9.568332e-01	ci right 9.590232e-01	k: 124532	n:130000
KS ci ratio: 1.119793e-01	ci left: 8.815254e-03	ci right 9.868345e-03	k: 1213	n:130000
ZFYVE9   130000 perm   32 sec   (4060 perm/sec)   p_kst 9.330769e-03   p_cons 9.579385e-01   p_joint 1.787692e-02

Joint ci ratio: 7.882778e-02	ci left: 1.667247e-02	ci right 1.804762e-02	k: 2429	n:140000
Cons ci ratio: 2.193204e-03	ci left: 9.569579e-01	ci right 9.590660e-01	k: 134123	n:140000
KS ci ratio: 1.076314e-01	ci left: 8.880280e-03	ci right 9.897338e-03	k: 1313	n:140000
ZFYVE9   140000 perm   35 sec   (4003 perm/sec)   p_kst 9.378571e-03   p_cons 9.580214e-01   p_joint 1.735000e-02

Joint ci ratio: 7.241697e-02	ci left: 1.846568e-02	ci right 1.985966e-02	k: 2873	n:150000
Cons ci ratio: 2.119039e-03	ci left: 9.569862e-01	ci right 9.590228e-01	k: 143702	n:150000
KS ci ratio: 1.043513e-01	ci left: 8.833406e-03	ci right 9.812369e-03	k: 1397	n:150000
ZFYVE9   150000 perm   38 sec   (3948 perm/sec)   p_kst 9.313333e-03   p_cons 9.580133e-01   p_joint 1.915333e-02

Joint ci ratio: 7.053616e-02	ci left: 1.826908e-02	ci right 1.961093e-02	k: 3029	n:160000
Cons ci ratio: 2.051923e-03	ci left: 9.570120e-01	ci right 9.589839e-01	k: 153281	n:160000
KS ci ratio: 1.004008e-01	ci left: 8.963427e-03	ci right 9.916976e-03	k: 1509	n:160000
ZFYVE9   160000 perm   41 sec   (3893 perm/sec)   p_kst 9.431250e-03   p_cons 9.580062e-01   p_joint 1.893125e-02

Joint ci ratio: 6.673206e-02	ci left: 1.922981e-02	ci right 2.056310e-02	k: 3381	n:170000
Cons ci ratio: 1.988622e-03	ci left: 9.571249e-01	ci right 9.590359e-01	k: 162875	n:170000
KS ci ratio: 9.772259e-02	ci left: 8.918032e-03	ci right 9.839992e-03	k: 1593	n:170000
ZFYVE9   170000 perm   44 sec   (3837 perm/sec)   p_kst 9.370588e-03   p_cons 9.580882e-01   p_joint 1.988824e-02

Outputting figure to mutsig2_images.part000000000194/ZFYVE9.5_4357_170000_0.0093706_0.95809_0.019888.png
                gene_name: ZFYVE9
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 40 percent done.
ZHX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
Cons ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
KS ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
ZHX1   10000 perm   2 sec   (6447 perm/sec)   p_kst 4.104000e-01   p_cons 6.353000e-01   p_joint 5.534000e-01

Outputting figure to mutsig2_images.part000000000194/ZHX1.5_2626_10000_0.4104_0.6353_0.5534.png
                gene_name: ZHX1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 42 percent done.
ZHX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
Cons ci ratio: 4.222657e-02	ci left: 4.529894e-01	ci right 4.726323e-01	k: 4628	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
ZHX3   10000 perm   2 sec   (5878 perm/sec)   p_kst 3.676000e-01   p_cons 4.628000e-01   p_joint 4.480000e-01

Outputting figure to mutsig2_images.part000000000194/ZHX3.5_2879_10000_0.3676_0.4628_0.448.png
                gene_name: ZHX3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 43 percent done.
ZIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
Cons ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
KS ci ratio: 4.929473e-02	ci left: 3.777363e-01	ci right 3.969293e-01	k: 3873	n:10000
ZIK1   10000 perm   2 sec   (6639 perm/sec)   p_kst 3.873000e-01   p_cons 4.967000e-01   p_joint 5.509000e-01

Outputting figure to mutsig2_images.part000000000194/ZIK1.5_1480_10000_0.3873_0.4967_0.5509.png
                gene_name: ZIK1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 45 percent done.
ZMAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
Cons ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
KS ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
ZMAT1   10000 perm   2 sec   (6042 perm/sec)   p_kst 2.423000e-01   p_cons 2.713000e-01   p_joint 1.930000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT1.5_1941_10000_0.2423_0.2713_0.193.png
                gene_name: ZMAT1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 46 percent done.
ZMIZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
Cons ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KS ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
ZMIZ2   10000 perm   2 sec   (6141 perm/sec)   p_kst 4.500000e-02   p_cons 1.813000e-01   p_joint 1.204000e-01

Joint ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
Cons ci ratio: 5.597930e-02	ci left: 1.913588e-01	ci right 2.024295e-01	k: 3937	n:20000
KS ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
ZMIZ2   20000 perm   4 sec   (5528 perm/sec)   p_kst 4.400000e-02   p_cons 1.968500e-01   p_joint 7.530000e-02

Joint ci ratio: 7.720370e-02	ci left: 7.607011e-02	ci right 8.221169e-02	k: 2373	n:30000
Cons ci ratio: 4.569747e-02	ci left: 1.924461e-01	ci right 2.014794e-01	k: 5908	n:30000
KS ci ratio: 1.063807e-01	ci left: 4.099204e-02	ci right 4.563026e-02	k: 1298	n:30000
ZMIZ2   30000 perm   6 sec   (5293 perm/sec)   p_kst 4.326667e-02   p_cons 1.969333e-01   p_joint 7.910000e-02

Joint ci ratio: 8.081626e-02	ci left: 5.330065e-02	ci right 5.781414e-02	k: 2221	n:40000
Cons ci ratio: 4.064372e-02	ci left: 1.848262e-01	ci right 1.925190e-01	k: 7546	n:40000
KS ci ratio: 9.163214e-02	ci left: 4.174179e-02	ci right 4.577478e-02	k: 1749	n:40000
ZMIZ2   40000 perm   8 sec   (5139 perm/sec)   p_kst 4.372500e-02   p_cons 1.886500e-01   p_joint 5.552500e-02

Outputting figure to mutsig2_images.part000000000194/ZMIZ2.5_2835_40000_0.043725_0.18865_0.055525.png
                gene_name: ZMIZ2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 48 percent done.
ZDHHC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
Cons ci ratio: 1.524259e-02	ci left: 8.619232e-01	ci right 8.752613e-01	k: 8687	n:10000
KS ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
ZDHHC8   10000 perm   2 sec   (6257 perm/sec)   p_kst 6.910000e-02   p_cons 8.687000e-01   p_joint 2.081000e-01

Joint ci ratio: 7.011743e-02	ci left: 1.303908e-01	ci right 1.399155e-01	k: 2702	n:20000
Cons ci ratio: 1.038648e-02	ci left: 8.722667e-01	ci right 8.814234e-01	k: 17538	n:20000
KS ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
ZDHHC8   20000 perm   4 sec   (5645 perm/sec)   p_kst 6.990000e-02   p_cons 8.769000e-01   p_joint 1.351000e-01

Joint ci ratio: 5.820489e-02	ci left: 1.274975e-01	ci right 1.351741e-01	k: 3939	n:30000
Cons ci ratio: 8.443549e-03	ci left: 8.740743e-01	ci right 8.815190e-01	k: 26335	n:30000
KS ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
ZDHHC8   30000 perm   6 sec   (5396 perm/sec)   p_kst 6.986667e-02   p_cons 8.778333e-01   p_joint 1.313000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC8.4_2557_30000_0.069867_0.87783_0.1313.png
                gene_name: ZDHHC8
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 49 percent done.
ZFAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
Cons ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
KS ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
ZFAND1   10000 perm   1 sec   (7063 perm/sec)   p_kst 5.819000e-01   p_cons 5.912000e-01   p_joint 7.201000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAND1.4_887_10000_0.5819_0.5912_0.7201.png
                gene_name: ZFAND1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 51 percent done.
ZFP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
ZFP30   10000 perm   1 sec   (6680 perm/sec)   p_kst 5.566000e-01   p_cons 2.158000e-01   p_joint 4.086000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP30.4_1576_10000_0.5566_0.2158_0.4086.png
                gene_name: ZFP30
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 52 percent done.
ZFP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
Cons ci ratio: 1.019629e-02	ci left: 9.317489e-01	ci right 9.413948e-01	k: 9367	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
ZFP37   10000 perm   1 sec   (6914 perm/sec)   p_kst 1.186000e-01   p_cons 9.367000e-01   p_joint 2.807000e-01

Joint ci ratio: 4.609736e-02	ci left: 2.593893e-01	ci right 2.716789e-01	k: 5310	n:20000
Cons ci ratio: 7.295424e-03	ci left: 9.317508e-01	ci right 9.386220e-01	k: 18705	n:20000
KS ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
ZFP37   20000 perm   3 sec   (6191 perm/sec)   p_kst 1.232000e-01   p_cons 9.352500e-01   p_joint 2.655000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP37.4_1909_20000_0.1232_0.93525_0.2655.png
                gene_name: ZFP37
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 54 percent done.
ZFP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.448821e-02	ci left: 2.610197e-01	ci right 2.785146e-01	k: 2697	n:10000
Cons ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
KS ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
ZFP42   10000 perm   1 sec   (7419 perm/sec)   p_kst 2.854000e-01   p_cons 4.010000e-01   p_joint 2.697000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP42.4_937_10000_0.2854_0.401_0.2697.png
                gene_name: ZFP42
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 55 percent done.
ZFP82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
Cons ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
KS ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
ZFP82   10000 perm   2 sec   (6465 perm/sec)   p_kst 6.200000e-03   p_cons 4.507000e-01   p_joint 1.750000e-02

Joint ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
Cons ci ratio: 3.067551e-02	ci left: 4.425388e-01	ci right 4.563759e-01	k: 8989	n:20000
KS ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
ZFP82   20000 perm   3 sec   (5821 perm/sec)   p_kst 5.500000e-03   p_cons 4.494500e-01   p_joint 1.890000e-02

Joint ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
Cons ci ratio: 2.510544e-02	ci left: 4.426610e-01	ci right 4.539490e-01	k: 13449	n:30000
KS ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
ZFP82   30000 perm   5 sec   (5568 perm/sec)   p_kst 5.333333e-03   p_cons 4.483000e-01   p_joint 1.766667e-02

Joint ci ratio: 1.229692e-01	ci left: 2.324955e-02	ci right 2.631997e-02	k: 990	n:40000
Cons ci ratio: 2.174336e-02	ci left: 4.433928e-01	ci right 4.531647e-01	k: 17931	n:40000
KS ci ratio: 2.635553e-01	ci left: 4.775457e-03	ci right 6.247731e-03	k: 219	n:40000
ZFP82   40000 perm   7 sec   (5405 perm/sec)   p_kst 5.475000e-03   p_cons 4.482750e-01   p_joint 2.475000e-02

Joint ci ratio: 1.220928e-01	ci left: 1.896539e-02	ci right 2.145076e-02	k: 1009	n:50000
Cons ci ratio: 1.939444e-02	ci left: 4.452727e-01	ci right 4.540131e-01	k: 22482	n:50000
KS ci ratio: 2.353018e-01	ci left: 4.870588e-03	ci right 6.187821e-03	k: 275	n:50000
ZFP82   50000 perm   9 sec   (5272 perm/sec)   p_kst 5.500000e-03   p_cons 4.496400e-01   p_joint 2.018000e-02

Joint ci ratio: 1.200261e-01	ci left: 1.641733e-02	ci right 1.852971e-02	k: 1047	n:60000
Cons ci ratio: 1.770913e-02	ci left: 4.455305e-01	ci right 4.535077e-01	k: 26971	n:60000
KS ci ratio: 2.155215e-01	ci left: 4.892369e-03	ci right 6.089561e-03	k: 328	n:60000
ZFP82   60000 perm   12 sec   (5148 perm/sec)   p_kst 5.466667e-03   p_cons 4.495167e-01   p_joint 1.745000e-02

Joint ci ratio: 1.028171e-01	ci left: 1.929592e-02	ci right 2.140124e-02	k: 1423	n:70000
Cons ci ratio: 1.641409e-02	ci left: 4.452675e-01	ci right 4.526510e-01	k: 31427	n:70000
KS ci ratio: 1.994908e-01	ci left: 4.938407e-03	ci right 6.046048e-03	k: 383	n:70000
ZFP82   70000 perm   14 sec   (5034 perm/sec)   p_kst 5.471429e-03   p_cons 4.489571e-01   p_joint 2.032857e-02

Joint ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
Cons ci ratio: 1.537054e-02	ci left: 4.449744e-01	ci right 4.518793e-01	k: 35874	n:80000
KS ci ratio: 1.834508e-01	ci left: 5.154278e-03	ci right 6.207058e-03	k: 453	n:80000
ZFP82   80000 perm   16 sec   (4924 perm/sec)   p_kst 5.662500e-03   p_cons 4.484250e-01   p_joint 1.927500e-02

Joint ci ratio: 1.075972e-01	ci left: 1.375078e-02	ci right 1.532519e-02	k: 1307	n:90000
Cons ci ratio: 1.449648e-02	ci left: 4.450026e-01	ci right 4.515118e-01	k: 40343	n:90000
KS ci ratio: 1.729166e-01	ci left: 5.186692e-03	ci right 6.178910e-03	k: 510	n:90000
ZFP82   90000 perm   19 sec   (4831 perm/sec)   p_kst 5.666667e-03   p_cons 4.482556e-01   p_joint 1.452222e-02

Joint ci ratio: 1.059260e-01	ci left: 1.279388e-02	ci right 1.423454e-02	k: 1350	n:100000
Cons ci ratio: 1.377140e-02	ci left: 4.444947e-01	ci right 4.506684e-01	k: 44758	n:100000
KS ci ratio: 1.569414e-01	ci left: 5.713245e-03	ci right 6.695727e-03	k: 619	n:100000
ZFP82   100000 perm   21 sec   (4753 perm/sec)   p_kst 6.190000e-03   p_cons 4.475800e-01   p_joint 1.350000e-02

Joint ci ratio: 1.068765e-01	ci left: 1.143569e-02	ci right 1.273568e-02	k: 1328	n:110000
Cons ci ratio: 1.274698e-02	ci left: 4.593320e-01	ci right 4.652337e-01	k: 50851	n:110000
KS ci ratio: 1.499701e-01	ci left: 5.709633e-03	ci right 6.643964e-03	k: 678	n:110000
ZFP82   110000 perm   24 sec   (4673 perm/sec)   p_kst 6.163636e-03   p_cons 4.622818e-01   p_joint 1.207273e-02

Joint ci ratio: 8.967248e-02	ci left: 1.497161e-02	ci right 1.638527e-02	k: 1880	n:120000
Cons ci ratio: 1.219140e-02	ci left: 4.599840e-01	ci right 4.656345e-01	k: 55537	n:120000
KS ci ratio: 1.449431e-01	ci left: 5.619054e-03	ci right 6.505072e-03	k: 726	n:120000
ZFP82   120000 perm   26 sec   (4598 perm/sec)   p_kst 6.050000e-03   p_cons 4.628083e-01   p_joint 1.566667e-02

Joint ci ratio: 7.580760e-02	ci left: 1.938927e-02	ci right 2.092455e-02	k: 2619	n:130000
Cons ci ratio: 1.173219e-02	ci left: 4.592869e-01	ci right 4.647148e-01	k: 60060	n:130000
KS ci ratio: 1.374754e-01	ci left: 5.787928e-03	ci right 6.649705e-03	k: 807	n:130000
ZFP82   130000 perm   29 sec   (4523 perm/sec)   p_kst 6.207692e-03   p_cons 4.620000e-01   p_joint 2.014615e-02

Joint ci ratio: 8.177089e-02	ci left: 1.548917e-02	ci right 1.681669e-02	k: 2260	n:140000
Cons ci ratio: 1.131762e-02	ci left: 4.588502e-01	ci right 4.640800e-01	k: 64605	n:140000
KS ci ratio: 1.327939e-01	ci left: 5.774784e-03	ci right 6.603012e-03	k: 865	n:140000
ZFP82   140000 perm   31 sec   (4452 perm/sec)   p_kst 6.178571e-03   p_cons 4.614643e-01   p_joint 1.614286e-02

Joint ci ratio: 7.969489e-02	ci left: 1.524033e-02	ci right 1.651181e-02	k: 2380	n:150000
Cons ci ratio: 1.093543e-02	ci left: 4.588680e-01	ci right 4.639201e-01	k: 69209	n:150000
KS ci ratio: 1.275913e-01	ci left: 5.854183e-03	ci right 6.658415e-03	k: 937	n:150000
ZFP82   150000 perm   34 sec   (4381 perm/sec)   p_kst 6.246667e-03   p_cons 4.613933e-01   p_joint 1.586667e-02

Joint ci ratio: 7.797518e-02	ci left: 1.494329e-02	ci right 1.616186e-02	k: 2487	n:160000
Cons ci ratio: 1.059391e-02	ci left: 4.586801e-01	ci right 4.635713e-01	k: 73780	n:160000
KS ci ratio: 1.229558e-01	ci left: 5.924210e-03	ci right 6.706341e-03	k: 1009	n:160000
ZFP82   160000 perm   37 sec   (4312 perm/sec)   p_kst 6.306250e-03   p_cons 4.611250e-01   p_joint 1.554375e-02

Joint ci ratio: 6.788806e-02	ci left: 1.858186e-02	ci right 1.989343e-02	k: 3269	n:170000
Cons ci ratio: 1.027849e-02	ci left: 4.587105e-01	ci right 4.634555e-01	k: 78384	n:170000
KS ci ratio: 1.189574e-01	ci left: 5.969338e-03	ci right 6.729997e-03	k: 1078	n:170000
ZFP82   170000 perm   40 sec   (4250 perm/sec)   p_kst 6.341176e-03   p_cons 4.610824e-01   p_joint 1.922941e-02

Joint ci ratio: 6.927503e-02	ci left: 1.687194e-02	ci right 1.808811e-02	k: 3145	n:180000
Cons ci ratio: 9.993127e-03	ci left: 4.585673e-01	ci right 4.631784e-01	k: 82957	n:180000
KS ci ratio: 1.155280e-01	ci left: 5.988233e-03	ci right 6.727801e-03	k: 1143	n:180000
ZFP82   180000 perm   43 sec   (4190 perm/sec)   p_kst 6.350000e-03   p_cons 4.608722e-01   p_joint 1.747222e-02

Joint ci ratio: 6.762223e-02	ci left: 1.679092e-02	ci right 1.797124e-02	k: 3301	n:190000
Cons ci ratio: 9.715865e-03	ci left: 4.591775e-01	ci right 4.636658e-01	k: 87670	n:190000
KS ci ratio: 1.129921e-01	ci left: 5.938917e-03	ci right 6.655219e-03	k: 1195	n:190000
ZFP82   190000 perm   46 sec   (4130 perm/sec)   p_kst 6.289474e-03   p_cons 4.614211e-01   p_joint 1.737368e-02

Joint ci ratio: 6.036413e-02	ci left: 2.002628e-02	ci right 2.127767e-02	k: 4129	n:200000
Cons ci ratio: 9.465878e-03	ci left: 4.594432e-01	ci right 4.638179e-01	k: 92326	n:200000
KS ci ratio: 1.103495e-01	ci left: 5.923868e-03	ci right 6.620558e-03	k: 1253	n:200000
ZFP82   200000 perm   49 sec   (4068 perm/sec)   p_kst 6.265000e-03   p_cons 4.616300e-01   p_joint 2.064500e-02

Joint ci ratio: 5.652317e-02	ci left: 2.175722e-02	ci right 2.302744e-02	k: 4701	n:210000
Cons ci ratio: 9.238400e-03	ci left: 4.594612e-01	ci right 4.637303e-01	k: 96935	n:210000
KS ci ratio: 1.073502e-01	ci left: 5.970678e-03	ci right 6.652581e-03	k: 1324	n:210000
ZFP82   210000 perm   52 sec   (4012 perm/sec)   p_kst 6.304762e-03   p_cons 4.615952e-01   p_joint 2.238571e-02

Joint ci ratio: 5.059223e-02	ci left: 2.589117e-02	ci right 2.723952e-02	k: 5843	n:220000
Cons ci ratio: 9.021208e-03	ci left: 4.597741e-01	ci right 4.639451e-01	k: 101609	n:220000
KS ci ratio: 1.052295e-01	ci left: 5.938207e-03	ci right 6.602175e-03	k: 1378	n:220000
ZFP82   220000 perm   56 sec   (3959 perm/sec)   p_kst 6.263636e-03   p_cons 4.618591e-01   p_joint 2.655909e-02

Joint ci ratio: 6.108271e-02	ci left: 1.705368e-02	ci right 1.813244e-02	k: 4045	n:230000
Cons ci ratio: 9.090217e-03	ci left: 4.450275e-01	ci right 4.490956e-01	k: 102824	n:230000
KS ci ratio: 1.032660e-01	ci left: 5.904446e-03	ci right 6.551571e-03	k: 1431	n:230000
ZFP82   230000 perm   59 sec   (3905 perm/sec)   p_kst 6.221739e-03   p_cons 4.470609e-01   p_joint 1.758696e-02

Joint ci ratio: 6.132944e-02	ci left: 1.622391e-02	ci right 1.725447e-02	k: 4016	n:240000
Cons ci ratio: 8.900446e-03	ci left: 4.449803e-01	ci right 4.489626e-01	k: 107273	n:240000
KS ci ratio: 1.014428e-01	ci left: 5.869542e-03	ci right 6.500807e-03	k: 1483	n:240000
ZFP82   240000 perm   62 sec   (3852 perm/sec)   p_kst 6.179167e-03   p_cons 4.469708e-01   p_joint 1.673333e-02

Joint ci ratio: 6.239244e-02	ci left: 1.505878e-02	ci right 1.603250e-02	k: 3885	n:250000
Cons ci ratio: 8.718063e-03	ci left: 4.451657e-01	ci right 4.490676e-01	k: 111779	n:250000
KS ci ratio: 9.942025e-02	ci left: 5.872631e-03	ci right 6.490901e-03	k: 1544	n:250000
ZFP82   250000 perm   66 sec   (3797 perm/sec)   p_kst 6.176000e-03   p_cons 4.471160e-01   p_joint 1.554000e-02

Outputting figure to mutsig2_images.part000000000194/ZFP82.4_1615_250000_0.006176_0.44712_0.01554.png
                gene_name: ZFP82
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.0062 
        ci_ks_bounds_left: 0.0059 
       ci_ks_bounds_right: 0.0065 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 57 percent done.
ZFP90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
Cons ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
ZFP90   10000 perm   2 sec   (6489 perm/sec)   p_kst 3.331000e-01   p_cons 1.917000e-01   p_joint 4.507000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP90.4_1927_10000_0.3331_0.1917_0.4507.png
                gene_name: ZFP90
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 58 percent done.
ZFYVE20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 3.194990e-02	ci left: 5.911232e-01	ci right 6.104181e-01	k: 6008	n:10000
ZFYVE20   10000 perm   2 sec   (6313 perm/sec)   p_kst 6.008000e-01   p_cons 1.453000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE20.4_2399_10000_0.6008_0.1453_0.3446.png
                gene_name: ZFYVE20
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
ZIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
KS ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
ZIC3   10000 perm   1 sec   (6747 perm/sec)   p_kst 9.785000e-01   p_cons 9.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZIC3.4_1416_10000_0.9785_0.9659_1.png
                gene_name: ZIC3
               theta_stop: 0.0074 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ZKSCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
ZKSCAN1   10000 perm   1 sec   (7526 perm/sec)   p_kst 8.703000e-01   p_cons 6.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZKSCAN1.4_1712_10000_0.8703_0.6768_1.png
                gene_name: ZKSCAN1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ZMYM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
Cons ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
KS ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
ZMYM2   10000 perm   2 sec   (5710 perm/sec)   p_kst 1.501000e-01   p_cons 4.122000e-01   p_joint 2.521000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM2.4_4226_10000_0.1501_0.4122_0.2521.png
                gene_name: ZMYM2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 65 percent done.
ZMYM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
Cons ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
KS ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
ZMYM3   10000 perm   2 sec   (5669 perm/sec)   p_kst 9.178000e-01   p_cons 2.689000e-01   p_joint 7.110000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM3.4_4227_10000_0.9178_0.2689_0.711.png
                gene_name: ZMYM3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 66 percent done.
ZMYND11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
Cons ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
KS ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
ZMYND11   10000 perm   2 sec   (6530 perm/sec)   p_kst 4.351000e-01   p_cons 5.359000e-01   p_joint 5.792000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYND11.4_1886_10000_0.4351_0.5359_0.5792.png
                gene_name: ZMYND11
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
ZFP112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
Cons ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
KS ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
ZFP112   10000 perm   2 sec   (6565 perm/sec)   p_kst 9.537000e-01   p_cons 1.791000e-01   p_joint 4.945000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP112.3_2758_10000_0.9537_0.1791_0.4945.png
                gene_name: ZFP112
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 69 percent done.
ZFP36L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
ZFP36L1   10000 perm   1 sec   (7346 perm/sec)   p_kst 5.661000e-01   p_cons 3.460000e-01   p_joint 5.700000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP36L1.3_1025_10000_0.5661_0.346_0.57.png
                gene_name: ZFP36L1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 71 percent done.
ZFYVE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
Cons ci ratio: 7.831486e-03	ci left: 9.577516e-01	ci right 9.653765e-01	k: 9617	n:10000
KS ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
ZFYVE1   10000 perm   2 sec   (6403 perm/sec)   p_kst 3.376000e-01   p_cons 9.617000e-01   p_joint 4.107000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE1.3_2378_10000_0.3376_0.9617_0.4107.png
                gene_name: ZFYVE1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 72 percent done.
ZGPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
Cons ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
KS ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
ZGPAT   10000 perm   1 sec   (6837 perm/sec)   p_kst 1.466000e-01   p_cons 9.490000e-02   p_joint 1.081000e-01

Joint ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
Cons ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
KS ci ratio: 6.686310e-02	ci left: 1.417246e-01	ci right 1.515784e-01	k: 2932	n:20000
ZGPAT   20000 perm   3 sec   (6093 perm/sec)   p_kst 1.466000e-01   p_cons 9.430000e-02   p_joint 7.075000e-02

Joint ci ratio: 7.859634e-02	ci left: 7.354946e-02	ci right 7.959951e-02	k: 2296	n:30000
Cons ci ratio: 7.005644e-02	ci left: 9.117975e-02	ci right 9.783235e-02	k: 2834	n:30000
KS ci ratio: 5.535908e-02	ci left: 1.392214e-01	ci right 1.471812e-01	k: 4295	n:30000
ZGPAT   30000 perm   5 sec   (5797 perm/sec)   p_kst 1.431667e-01   p_cons 9.446667e-02   p_joint 7.653333e-02

Outputting figure to mutsig2_images.part000000000194/ZGPAT.3_1620_30000_0.14317_0.094467_0.076533.png
                gene_name: ZGPAT
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 74 percent done.
ZKSCAN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
ZKSCAN5   10000 perm   2 sec   (6642 perm/sec)   p_kst 5.894000e-01   p_cons 4.601000e-01   p_joint 7.405000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN5.3_2544_10000_0.5894_0.4601_0.7405.png
                gene_name: ZKSCAN5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 75 percent done.
ZMAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
ZMAT4   10000 perm   1 sec   (7667 perm/sec)   p_kst 8.870000e-02   p_cons 8.018000e-01   p_joint 1.427000e-01

Joint ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
Cons ci ratio: 1.377073e-02	ci left: 7.964591e-01	ci right 8.075530e-01	k: 16041	n:20000
KS ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
ZMAT4   20000 perm   3 sec   (6735 perm/sec)   p_kst 8.455000e-02   p_cons 8.020500e-01   p_joint 1.038000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT4.3_714_20000_0.08455_0.80205_0.1038.png
                gene_name: ZMAT4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 77 percent done.
ZMYM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
ZMYM5   10000 perm   1 sec   (6849 perm/sec)   p_kst 1.701000e-01   p_cons 5.225000e-01   p_joint 1.790000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM5.3_2145_10000_0.1701_0.5225_0.179.png
                gene_name: ZMYM5
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 78 percent done.
ZDHHC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
Cons ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
ZDHHC6   10000 perm   1 sec   (7427 perm/sec)   p_kst 3.540000e-01   p_cons 3.500000e-02   p_joint 1.144000e-01

Joint ci ratio: 3.351392e-02	ci left: 3.993327e-01	ci right 4.129946e-01	k: 8123	n:20000
Cons ci ratio: 1.472962e-01	ci left: 3.167591e-02	ci right 3.676068e-02	k: 683	n:20000
KS ci ratio: 3.695021e-02	ci left: 3.533932e-01	ci right 3.667475e-01	k: 7201	n:20000
ZDHHC6   20000 perm   3 sec   (6568 perm/sec)   p_kst 3.600500e-01   p_cons 3.415000e-02   p_joint 4.061500e-01

Joint ci ratio: 3.440443e-02	ci left: 2.968073e-01	ci right 3.072311e-01	k: 9060	n:30000
Cons ci ratio: 1.207561e-01	ci left: 3.188072e-02	ci right 3.601018e-02	k: 1017	n:30000
KS ci ratio: 3.019589e-02	ci left: 3.542333e-01	ci right 3.651272e-01	k: 10790	n:30000
ZDHHC6   30000 perm   5 sec   (6239 perm/sec)   p_kst 3.596667e-01   p_cons 3.390000e-02   p_joint 3.020000e-01

Joint ci ratio: 3.554606e-02	ci left: 2.289884e-01	ci right 2.373004e-01	k: 9325	n:40000
Cons ci ratio: 1.044323e-01	ci left: 3.224538e-02	ci right 3.582268e-02	k: 1360	n:40000
KS ci ratio: 2.621011e-02	ci left: 3.539229e-01	ci right 3.633476e-01	k: 14345	n:40000
ZDHHC6   40000 perm   7 sec   (6018 perm/sec)   p_kst 3.586250e-01   p_cons 3.400000e-02   p_joint 2.331250e-01

Joint ci ratio: 2.278845e-02	ci left: 3.675215e-01	ci right 3.760134e-01	k: 18588	n:50000
Cons ci ratio: 9.416197e-02	ci left: 3.192039e-02	ci right 3.509407e-02	k: 1674	n:50000
KS ci ratio: 2.344354e-02	ci left: 3.544145e-01	ci right 3.628419e-01	k: 17931	n:50000
ZDHHC6   50000 perm   9 sec   (5841 perm/sec)   p_kst 3.586200e-01   p_cons 3.348000e-02   p_joint 3.717600e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC6.2_1282_50000_0.35862_0.03348_0.37176.png
                gene_name: ZDHHC6
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 80 percent done.
ZDHHC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
ZDHHC9   10000 perm   1 sec   (7617 perm/sec)   p_kst 8.451000e-01   p_cons 8.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZDHHC9.2_1131_10000_0.8451_0.8804_1.png
                gene_name: ZDHHC9
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ZFAND6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.336598e-02	ci left: 8.897487e-01	ci right 9.018196e-01	k: 8959	n:10000
Cons ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
KS ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
ZFAND6   10000 perm   1 sec   (7948 perm/sec)   p_kst 8.062000e-01   p_cons 1.184000e-01   p_joint 8.959000e-01

Joint ci ratio: 9.228054e-03	ci left: 8.960135e-01	ci right 9.043697e-01	k: 18005	n:20000
Cons ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
KS ci ratio: 1.346866e-02	ci left: 8.034824e-01	ci right 8.144276e-01	k: 16180	n:20000
ZFAND6   20000 perm   3 sec   (6921 perm/sec)   p_kst 8.090000e-01   p_cons 1.175500e-01   p_joint 9.002500e-01

Outputting figure to mutsig2_images.part000000000194/ZFAND6.2_647_20000_0.809_0.11755_0.90025.png
                gene_name: ZFAND6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.90 

Current progress: 83 percent done.
ZFP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
Cons ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
KS ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
ZFP2   10000 perm   1 sec   (7796 perm/sec)   p_kst 4.203000e-01   p_cons 3.462000e-01   p_joint 3.592000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP2.2_1390_10000_0.4203_0.3462_0.3592.png
                gene_name: ZFP2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 85 percent done.
ZFP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
KS ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
ZFP3   10000 perm   1 sec   (7747 perm/sec)   p_kst 9.774000e-01   p_cons 7.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP3.2_1513_10000_0.9774_0.7799_1.png
                gene_name: ZFP3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZFP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
Cons ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
ZFP36   10000 perm   1 sec   (7672 perm/sec)   p_kst 5.430000e-01   p_cons 1.355000e-01   p_joint 1.461000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP36.2_989_10000_0.543_0.1355_0.1461.png
                gene_name: ZFP36
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 88 percent done.
ZFP41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
Cons ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
KS ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
ZFP41   10000 perm   1 sec   (8003 perm/sec)   p_kst 5.466000e-01   p_cons 6.775000e-01   p_joint 7.414000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP41.2_601_10000_0.5466_0.6775_0.7414.png
                gene_name: ZFP41
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 89 percent done.
ZFYVE19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
Cons ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
KS ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
ZFYVE19   10000 perm   1 sec   (7462 perm/sec)   p_kst 5.908000e-01   p_cons 9.061000e-01   p_joint 8.945000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE19.2_1460_10000_0.5908_0.9061_0.8945.png
                gene_name: ZFYVE19
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
ZHX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
ZHX2   10000 perm   1 sec   (7059 perm/sec)   p_kst 1.100000e-02   p_cons 3.043000e-01   p_joint 8.540000e-02

Joint ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
Cons ci ratio: 4.071006e-02	ci left: 3.102549e-01	ci right 3.231984e-01	k: 6334	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
ZHX2   20000 perm   3 sec   (6290 perm/sec)   p_kst 1.040000e-02   p_cons 3.167000e-01   p_joint 2.575000e-02

Joint ci ratio: 6.678785e-02	ci left: 9.954950e-02	ci right 1.064609e-01	k: 3089	n:30000
Cons ci ratio: 3.318214e-02	ci left: 3.122005e-01	ci right 3.227682e-01	k: 9524	n:30000
KS ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
ZHX2   30000 perm   5 sec   (6001 perm/sec)   p_kst 1.030000e-02   p_cons 3.174667e-01   p_joint 1.029667e-01

Joint ci ratio: 6.541638e-02	ci left: 7.967394e-02	ci right 8.508687e-02	k: 3294	n:40000
Cons ci ratio: 2.875981e-02	ci left: 3.125655e-01	ci right 3.217111e-01	k: 12685	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
ZHX2   40000 perm   7 sec   (5792 perm/sec)   p_kst 9.975000e-03   p_cons 3.171250e-01   p_joint 8.235000e-02

Joint ci ratio: 5.592843e-02	ci left: 8.695248e-02	ci right 9.197530e-02	k: 4472	n:50000
Cons ci ratio: 2.574079e-02	ci left: 3.127628e-01	ci right 3.209385e-01	k: 15842	n:50000
KS ci ratio: 1.749582e-01	ci left: 9.069876e-03	ci right 1.082772e-02	k: 496	n:50000
ZHX2   50000 perm   9 sec   (5638 perm/sec)   p_kst 9.920000e-03   p_cons 3.168400e-01   p_joint 8.944000e-02

Joint ci ratio: 5.173371e-02	ci left: 8.506951e-02	ci right 8.960383e-02	k: 5239	n:60000
Cons ci ratio: 2.350128e-02	ci left: 3.130614e-01	ci right 3.205229e-01	k: 19007	n:60000
KS ci ratio: 1.614181e-01	ci left: 8.947225e-03	ci right 1.053407e-02	k: 583	n:60000
ZHX2   60000 perm   11 sec   (5506 perm/sec)   p_kst 9.716667e-03   p_cons 3.167833e-01   p_joint 8.731667e-02

Joint ci ratio: 3.634499e-02	ci left: 1.399040e-01	ci right 1.450971e-01	k: 9974	n:70000
Cons ci ratio: 2.169422e-02	ci left: 3.146075e-01	ci right 3.215218e-01	k: 22264	n:70000
KS ci ratio: 1.480607e-01	ci left: 9.179802e-03	ci right 1.066125e-02	k: 693	n:70000
ZHX2   70000 perm   13 sec   (5390 perm/sec)   p_kst 9.900000e-03   p_cons 3.180571e-01   p_joint 1.424857e-01

Joint ci ratio: 3.629366e-02	ci left: 1.249480e-01	ci right 1.295791e-01	k: 10180	n:80000
Cons ci ratio: 2.028064e-02	ci left: 3.150974e-01	ci right 3.215657e-01	k: 25466	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
ZHX2   80000 perm   15 sec   (5276 perm/sec)   p_kst 9.787500e-03   p_cons 3.183250e-01   p_joint 1.272500e-01

Joint ci ratio: 3.892885e-02	ci left: 9.928100e-02	ci right 1.032336e-01	k: 9112	n:90000
Cons ci ratio: 1.914154e-02	ci left: 3.148138e-01	ci right 3.209091e-01	k: 28607	n:90000
KS ci ratio: 1.317218e-01	ci left: 9.102211e-03	ci right 1.039635e-02	k: 876	n:90000
ZHX2   90000 perm   17 sec   (5158 perm/sec)   p_kst 9.733333e-03   p_cons 3.178556e-01   p_joint 1.012444e-01

Joint ci ratio: 4.037842e-02	ci left: 8.438824e-02	ci right 8.787581e-02	k: 8612	n:100000
Cons ci ratio: 1.817756e-02	ci left: 3.145354e-01	ci right 3.203152e-01	k: 31742	n:100000
KS ci ratio: 1.260407e-01	ci left: 8.975843e-03	ci right 1.019286e-02	k: 957	n:100000
ZHX2   100000 perm   20 sec   (5057 perm/sec)   p_kst 9.570000e-03   p_cons 3.174200e-01   p_joint 8.612000e-02

Joint ci ratio: 3.852670e-02	ci left: 8.435858e-02	ci right 8.768147e-02	k: 9461	n:110000
Cons ci ratio: 1.734811e-02	ci left: 3.142596e-01	ci right 3.197682e-01	k: 34871	n:110000
KS ci ratio: 1.208017e-01	ci left: 8.908713e-03	ci right 1.006282e-02	k: 1042	n:110000
ZHX2   110000 perm   22 sec   (4961 perm/sec)   p_kst 9.472727e-03   p_cons 3.170091e-01   p_joint 8.600909e-02

Joint ci ratio: 3.237422e-02	ci left: 1.071097e-01	ci right 1.106426e-01	k: 13064	n:120000
Cons ci ratio: 1.661696e-02	ci left: 3.141847e-01	ci right 3.194575e-01	k: 38018	n:120000
KS ci ratio: 1.159586e-01	ci left: 8.886023e-03	ci right 9.987879e-03	k: 1131	n:120000
ZHX2   120000 perm   25 sec   (4869 perm/sec)   p_kst 9.425000e-03   p_cons 3.168167e-01   p_joint 1.088667e-01

Joint ci ratio: 3.046275e-02	ci left: 1.112609e-01	ci right 1.147102e-01	k: 14687	n:130000
Cons ci ratio: 1.596825e-02	ci left: 3.142022e-01	ci right 3.192675e-01	k: 41175	n:130000
KS ci ratio: 1.106079e-01	ci left: 9.039656e-03	ci right 1.010547e-02	k: 1243	n:130000
ZHX2   130000 perm   27 sec   (4779 perm/sec)   p_kst 9.561538e-03   p_cons 3.167308e-01   p_joint 1.129769e-01

Joint ci ratio: 3.276490e-02	ci left: 9.123536e-02	ci right 9.428153e-02	k: 12985	n:140000
Cons ci ratio: 1.541317e-02	ci left: 3.135721e-01	ci right 3.184498e-01	k: 44241	n:140000
KS ci ratio: 1.066525e-01	ci left: 9.047156e-03	ci right 1.007331e-02	k: 1337	n:140000
ZHX2   140000 perm   30 sec   (4696 perm/sec)   p_kst 9.550000e-03   p_cons 3.160071e-01   p_joint 9.275000e-02

Joint ci ratio: 2.929083e-02	ci left: 1.051022e-01	ci right 1.082331e-01	k: 15999	n:150000
Cons ci ratio: 1.488231e-02	ci left: 3.138937e-01	ci right 3.186068e-01	k: 47437	n:150000
KS ci ratio: 1.032754e-01	ci left: 9.021763e-03	ci right 1.001067e-02	k: 1426	n:150000
ZHX2   150000 perm   32 sec   (4618 perm/sec)   p_kst 9.506667e-03   p_cons 3.162467e-01   p_joint 1.066600e-01

Joint ci ratio: 3.319951e-02	ci left: 7.881784e-02	ci right 8.148490e-02	k: 12823	n:160000
Cons ci ratio: 1.440048e-02	ci left: 3.142462e-01	ci right 3.188105e-01	k: 50644	n:160000
KS ci ratio: 1.000336e-01	ci left: 9.030469e-03	ci right 9.987431e-03	k: 1520	n:160000
ZHX2   160000 perm   35 sec   (4545 perm/sec)   p_kst 9.500000e-03   p_cons 3.165250e-01   p_joint 8.014375e-02

Joint ci ratio: 3.085843e-02	ci left: 8.535479e-02	ci right 8.803580e-02	k: 14737	n:170000
Cons ci ratio: 1.395824e-02	ci left: 3.146944e-01	ci right 3.191236e-01	k: 53874	n:170000
KS ci ratio: 9.698821e-02	ci left: 9.055802e-03	ci right 9.984570e-03	k: 1617	n:170000
ZHX2   170000 perm   38 sec   (4475 perm/sec)   p_kst 9.511765e-03   p_cons 3.169059e-01   p_joint 8.668824e-02

Outputting figure to mutsig2_images.part000000000194/ZHX2.2_2518_170000_0.0095118_0.31691_0.086688.png
                gene_name: ZHX2
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.0100 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.088 

Current progress: 92 percent done.
ZIC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 1.047660e-01	ci left: 1.163301e-01	ci right 1.292906e-01	k: 1227	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
ZIC5   10000 perm   1 sec   (7068 perm/sec)   p_kst 4.197000e-01   p_cons 1.227000e-01   p_joint 2.906000e-01

Joint ci ratio: 4.578041e-02	ci left: 2.620692e-01	ci right 2.743983e-01	k: 5364	n:20000
Cons ci ratio: 7.305160e-02	ci left: 1.212336e-01	ci right 1.304754e-01	k: 2516	n:20000
KS ci ratio: 3.227124e-02	ci left: 4.176363e-01	ci right 4.313856e-01	k: 8490	n:20000
ZIC5   20000 perm   3 sec   (6303 perm/sec)   p_kst 4.245000e-01   p_cons 1.258000e-01   p_joint 2.682000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC5.2_2000_20000_0.4245_0.1258_0.2682.png
                gene_name: ZIC5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 94 percent done.
ZKSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
Cons ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
KS ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
ZKSCAN4   10000 perm   1 sec   (7305 perm/sec)   p_kst 3.515000e-01   p_cons 9.521000e-01   p_joint 7.878000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN4.2_1658_10000_0.3515_0.9521_0.7878.png
                gene_name: ZKSCAN4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 95 percent done.
ZMPSTE24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
Cons ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
KS ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
ZMPSTE24   10000 perm   1 sec   (7571 perm/sec)   p_kst 6.096000e-01   p_cons 3.103000e-01   p_joint 9.445000e-01

Outputting figure to mutsig2_images.part000000000194/ZMPSTE24.2_1468_10000_0.6096_0.3103_0.9445.png
                gene_name: ZMPSTE24
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 97 percent done.
ZMYM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
Cons ci ratio: 8.007830e-02	ci left: 1.855021e-01	ci right 2.010770e-01	k: 1932	n:10000
KS ci ratio: 3.941418e-02	ci left: 4.873523e-01	ci right 5.070493e-01	k: 4972	n:10000
ZMYM1   10000 perm   2 sec   (6441 perm/sec)   p_kst 4.972000e-01   p_cons 1.932000e-01   p_joint 2.125000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM1.2_3465_10000_0.4972_0.1932_0.2125.png
                gene_name: ZMYM1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 98 percent done.
ZMYND12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
Cons ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
KS ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
ZMYND12   10000 perm   1 sec   (7920 perm/sec)   p_kst 6.695000e-01   p_cons 2.255000e-01   p_joint 5.456000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYND12.2_1130_10000_0.6695_0.2255_0.5456.png
                gene_name: ZMYND12
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000194
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 194 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 4422713: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000195> was used as the working directory.
Started at Wed Oct 24 18:11:41 2012
Results reported at Wed Oct 24 18:21:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000195.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000195.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 195  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000195.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    637.15 sec.
    Max Memory :      5402 MB
    Max Swap   :      7729 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
195
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 195
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 195: processing genes 17552 - 17642
Calculating significance of each gene.
Using projection method.
17552	ZMYND17	9.581627e-01
17553	ZMYND19	1
17554	ZMYND8	8.995260e-01
17555	ZNF10	2.429198e-01
17556	ZNF100	8.698770e-01
17557	ZNF101	1
17558	ZNF107	2.295017e-01
17559	ZNF114	6.137396e-01
17560	ZNF117	7.287967e-01
17561	ZNF12	7.870797e-01
17562	ZNF121	2.094049e-01
17563	ZNF124	1
17564	ZNF131	6.059616e-01
17565	ZNF132	9.471396e-01
17566	ZNF133	8.441216e-01
17567	ZNF134	6.926297e-01
17568	ZNF135	8.489681e-01
17569	ZNF136	7.523896e-01
17570	ZNF138	1
17571	ZNF14	6.695302e-01
17572	ZNF140	3.755920e-01
17573	ZNF141	8.022737e-01
17574	ZNF142	9.987593e-01
17575	ZNF143	1
17576	ZNF146	8.047912e-01
In gene ZNF148 the following bins exceed PROBCAP:
    LUAD-50-5930-TP	categ 6	N = 2409    n = 1	mu =   9.71e-07
17577	ZNF148	4.254431e-01
17578	ZNF154	1.031048e-01
17579	ZNF155	5.842329e-02
17580	ZNF157	1.940840e-01
17581	ZNF16	1
17582	ZNF160	1.380503e-01
17583	ZNF165	5.748000e-01
17584	ZNF167	8.902562e-01
17585	ZNF169	6.577974e-01
17586	ZNF17	1
17587	ZNF174	1
17588	ZNF175	1
17589	ZNF177	2.372993e-01
17590	ZNF18	7.386615e-01
17591	ZNF180	6.304164e-01
17592	ZNF181	2.868985e-01
17593	ZNF182	1
17594	ZNF184	6.189579e-01
17595	ZNF185	9.094113e-01
17596	ZNF187	1
17597	ZNF189	8.143684e-01
17598	ZNF19	5.984714e-01
17599	ZNF192	1
17600	ZNF193	5.016761e-01
17601	ZNF195	3.575725e-02
17602	ZNF197	8.542356e-01
17603	ZNF2	3.466733e-01
17604	ZNF20	7.258589e-01
17605	ZNF200	1
17606	ZNF202	2.290472e-01
17607	ZNF205	1
17608	ZNF207	1
17609	ZNF208	9.567024e-01
17610	ZNF211	5.292346e-01
17611	ZNF212	1
17612	ZNF213	6.860517e-01
17613	ZNF214	1.768611e-01
17614	ZNF215	2.904812e-02
17615	ZNF217	1
17616	ZNF219	1
17617	ZNF22	5.185813e-01
17618	ZNF221	3.203130e-01
17619	ZNF222	1
17620	ZNF223	6.588766e-02
17621	ZNF224	1
17622	ZNF225	4.074491e-01
17623	ZNF226	8.896927e-01
17624	ZNF227	6.321601e-01
17625	ZNF229	9.804183e-01
In gene ZNF23 the following bins exceed PROBCAP:
    LUAD-75-6203-TP	categ 6	N = 1944    n = 1	mu =   6.69e-08
17626	ZNF23	2.729898e-02
17627	ZNF230	8.105135e-01
17628	ZNF232	1
17629	ZNF233	8.331701e-01
17630	ZNF234	1
17631	ZNF235	4.944750e-01
17632	ZNF236	3.185157e-01
17633	ZNF238	5.369434e-01
17634	ZNF239	2.175594e-01
17635	ZNF24	1
17636	ZNF248	7.891607e-03
17637	ZNF25	2.246963e-01
17638	ZNF250	9.118579e-01
17639	ZNF251	6.156750e-01
17640	ZNF253	3.963408e-02
17641	ZNF254	8.515354e-02
17642	ZNF256	2.806624e-01
Done

Running MutSig 2:
Scatter job 195: processing genes 17552 - 17642
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF208
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
ZNF208   10000 perm   2 sec   (4372 perm/sec)   p_kst 3.126000e-01   p_cons 1.909000e-01   p_joint 1.913000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF208.24_3859_10000_0.3126_0.1909_0.1913.png
                gene_name: ZNF208
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 1 percent done.
ZNF236
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
ZNF236   10000 perm   3 sec   (3909 perm/sec)   p_kst 1.347000e-01   p_cons 1.863000e-01   p_joint 1.369000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF236.16_5662_10000_0.1347_0.1863_0.1369.png
                gene_name: ZNF236
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 3 percent done.
ZMYND8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 1.774850e-02	ci left: 8.223902e-01	ci right 8.372171e-01	k: 8299	n:10000
ZMYND8   10000 perm   2 sec   (4432 perm/sec)   p_kst 8.299000e-01   p_cons 2.246000e-01   p_joint 7.407000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND8.10_3659_10000_0.8299_0.2246_0.7407.png
                gene_name: ZMYND8
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 4 percent done.
ZNF217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
Cons ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
KS ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
ZNF217   10000 perm   2 sec   (5176 perm/sec)   p_kst 6.360000e-02   p_cons 4.827000e-01   p_joint 1.424000e-01

Joint ci ratio: 7.126491e-02	ci left: 1.266975e-01	ci right 1.361100e-01	k: 2627	n:20000
Cons ci ratio: 2.874721e-02	ci left: 4.748032e-01	ci right 4.887021e-01	k: 9635	n:20000
KS ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
ZNF217   20000 perm   4 sec   (4676 perm/sec)   p_kst 6.300000e-02   p_cons 4.817500e-01   p_joint 1.313500e-01

Joint ci ratio: 6.140371e-02	ci left: 1.159155e-01	ci right 1.232917e-01	k: 3587	n:30000
Cons ci ratio: 2.344052e-02	ci left: 4.767642e-01	ci right 4.881059e-01	k: 14473	n:30000
KS ci ratio: 8.350114e-02	ci left: 6.556875e-02	ci right 7.131516e-02	k: 2052	n:30000
ZNF217   30000 perm   7 sec   (4499 perm/sec)   p_kst 6.840000e-02   p_cons 4.824333e-01   p_joint 1.195667e-01

Outputting figure to mutsig2_images.part000000000195/ZNF217.10_3163_30000_0.0684_0.48243_0.11957.png
                gene_name: ZNF217
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 6 percent done.
ZNF107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
KS ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
ZNF107   10000 perm   2 sec   (5137 perm/sec)   p_kst 7.240000e-01   p_cons 1.970000e-02   p_joint 1.140000e-01

Joint ci ratio: 9.059276e-02	ci left: 8.170910e-02	ci right 8.951187e-02	k: 1711	n:20000
Cons ci ratio: 2.041526e-01	ci left: 1.625023e-02	ci right 1.999174e-02	k: 361	n:20000
KS ci ratio: 1.589013e-02	ci left: 7.466088e-01	ci right 7.586177e-01	k: 15053	n:20000
ZNF107   20000 perm   4 sec   (4664 perm/sec)   p_kst 7.526500e-01   p_cons 1.805000e-02   p_joint 8.555000e-02

Joint ci ratio: 8.324029e-02	ci left: 6.596099e-02	ci right 7.172285e-02	k: 2064	n:30000
Cons ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
KS ci ratio: 1.329075e-02	ci left: 7.385853e-01	ci right 7.485008e-01	k: 22307	n:30000
ZNF107   30000 perm   7 sec   (4479 perm/sec)   p_kst 7.435667e-01   p_cons 1.756667e-02   p_joint 6.880000e-02

Joint ci ratio: 8.054793e-02	ci left: 5.364398e-02	ci right 5.817076e-02	k: 2235	n:40000
Cons ci ratio: 1.480465e-01	ci left: 1.594851e-02	ci right 1.852226e-02	k: 688	n:40000
KS ci ratio: 1.148575e-02	ci left: 7.400701e-01	ci right 7.486444e-01	k: 29775	n:40000
ZNF107   40000 perm   9 sec   (4360 perm/sec)   p_kst 7.443750e-01   p_cons 1.720000e-02   p_joint 5.587500e-02

Joint ci ratio: 5.935254e-02	ci left: 7.785349e-02	ci right 8.263538e-02	k: 4011	n:50000
Cons ci ratio: 1.265789e-01	ci left: 1.762752e-02	ci right 2.002880e-02	k: 940	n:50000
KS ci ratio: 1.025577e-02	ci left: 7.411755e-01	ci right 7.488360e-01	k: 37251	n:50000
ZNF107   50000 perm   12 sec   (4255 perm/sec)   p_kst 7.450200e-01   p_cons 1.880000e-02   p_joint 8.022000e-02

Joint ci ratio: 5.652805e-02	ci left: 7.209868e-02	ci right 7.630928e-02	k: 4451	n:60000
Cons ci ratio: 1.152491e-01	ci left: 1.782540e-02	ci right 2.002148e-02	k: 1134	n:60000
KS ci ratio: 9.352839e-03	ci left: 7.418941e-01	ci right 7.488822e-01	k: 44724	n:60000
ZNF107   60000 perm   14 sec   (4174 perm/sec)   p_kst 7.454000e-01   p_cons 1.890000e-02   p_joint 7.418333e-02

Joint ci ratio: 5.247687e-02	ci left: 7.188789e-02	ci right 7.577610e-02	k: 5167	n:70000
Cons ci ratio: 1.068716e-01	ci left: 1.784844e-02	ci right 1.987744e-02	k: 1319	n:70000
KS ci ratio: 8.658725e-03	ci left: 7.421699e-01	ci right 7.486383e-01	k: 52179	n:70000
ZNF107   70000 perm   17 sec   (4101 perm/sec)   p_kst 7.454143e-01   p_cons 1.884286e-02   p_joint 7.381429e-02

Joint ci ratio: 4.919694e-02	ci left: 7.171330e-02	ci right 7.534270e-02	k: 5881	n:80000
Cons ci ratio: 9.961892e-02	ci left: 1.804078e-02	ci right 1.994433e-02	k: 1518	n:80000
KS ci ratio: 8.128345e-03	ci left: 7.410235e-01	ci right 7.470838e-01	k: 59525	n:80000
ZNF107   80000 perm   20 sec   (4026 perm/sec)   p_kst 7.440625e-01   p_cons 1.897500e-02   p_joint 7.351250e-02

Outputting figure to mutsig2_images.part000000000195/ZNF107.8_2360_80000_0.74406_0.018975_0.073512.png
                gene_name: ZNF107
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.075 

Current progress: 7 percent done.
ZNF135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
Cons ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
KS ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
ZNF135   10000 perm   2 sec   (5384 perm/sec)   p_kst 7.267000e-01   p_cons 1.178000e-01   p_joint 3.362000e-01

Joint ci ratio: 4.051339e-02	ci left: 3.123432e-01	ci right 3.253095e-01	k: 6376	n:20000
Cons ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
KS ci ratio: 1.698119e-02	ci left: 7.208688e-01	ci right 7.332651e-01	k: 14542	n:20000
ZNF135   20000 perm   4 sec   (4861 perm/sec)   p_kst 7.271000e-01   p_cons 1.310000e-01   p_joint 3.188000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF135.8_2182_20000_0.7271_0.131_0.3188.png
                gene_name: ZNF135
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 9 percent done.
ZNF214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
ZNF214   10000 perm   2 sec   (5256 perm/sec)   p_kst 2.852000e-01   p_cons 4.069000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF214.8_1829_10000_0.2852_0.4069_0.3466.png
                gene_name: ZNF214
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 10 percent done.
ZNF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
KS ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
ZNF23   10000 perm   2 sec   (5078 perm/sec)   p_kst 2.248000e-01   p_cons 9.252000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF23.8_1944_10000_0.2248_0.9252_0.3267.png
                gene_name: ZNF23
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 12 percent done.
ZNF248
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF248   10000 perm   2 sec   (5081 perm/sec)   p_kst 1   p_cons 9.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF248.8_1756_10000_1_0.9466_1.png
                gene_name: ZNF248
               theta_stop: 0.0093 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
ZNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 1.821160e-02	ci left: 8.148676e-01	ci right 8.299441e-01	k: 8225	n:10000
ZNF133   10000 perm   2 sec   (5215 perm/sec)   p_kst 8.225000e-01   p_cons 2.876000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF133.7_1974_10000_0.8225_0.2876_0.649.png
                gene_name: ZNF133
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 15 percent done.
ZNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
Cons ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
ZNF160   10000 perm   2 sec   (5331 perm/sec)   p_kst 6.923000e-01   p_cons 5.690000e-02   p_joint 1.607000e-01

Joint ci ratio: 6.590485e-02	ci left: 1.453240e-01	ci right 1.552779e-01	k: 3005	n:20000
Cons ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
KS ci ratio: 1.842898e-02	ci left: 6.870074e-01	ci right 6.998364e-01	k: 13869	n:20000
ZNF160   20000 perm   4 sec   (4741 perm/sec)   p_kst 6.934500e-01   p_cons 5.760000e-02   p_joint 1.502500e-01

Joint ci ratio: 4.948819e-02	ci left: 1.686689e-01	ci right 1.772612e-01	k: 5188	n:30000
Cons ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
KS ci ratio: 1.580292e-02	ci left: 6.668885e-01	ci right 6.775448e-01	k: 20167	n:30000
ZNF160   30000 perm   7 sec   (4524 perm/sec)   p_kst 6.722333e-01   p_cons 5.730000e-02   p_joint 1.729333e-01

Outputting figure to mutsig2_images.part000000000195/ZNF160.7_2473_30000_0.67223_0.0573_0.17293.png
                gene_name: ZNF160
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 16 percent done.
ZNF215
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
Cons ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
KS ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
ZNF215   10000 perm   2 sec   (5469 perm/sec)   p_kst 6.293000e-01   p_cons 2.009000e-01   p_joint 4.501000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF215.7_1574_10000_0.6293_0.2009_0.4501.png
                gene_name: ZNF215
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 18 percent done.
ZNF223
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558798e-02	ci left: 8.566152e-01	ci right 8.701724e-01	k: 8635	n:10000
Cons ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
KS ci ratio: 1.933710e-02	ci left: 7.963859e-01	ci right 8.120365e-01	k: 8043	n:10000
ZNF223   10000 perm   2 sec   (5518 perm/sec)   p_kst 8.043000e-01   p_cons 4.397000e-01   p_joint 8.635000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF223.7_1465_10000_0.8043_0.4397_0.8635.png
                gene_name: ZNF223
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 19 percent done.
ZNF142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
Cons ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
KS ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
ZNF142   10000 perm   2 sec   (4706 perm/sec)   p_kst 8.714000e-01   p_cons 8.520000e-02   p_joint 3.890000e-01

Joint ci ratio: 3.336157e-02	ci left: 4.015266e-01	ci right 4.152000e-01	k: 8167	n:20000
Cons ci ratio: 9.004739e-02	ci left: 8.263952e-02	ci right 9.048117e-02	k: 1730	n:20000
KS ci ratio: 1.126799e-02	ci left: 8.532883e-01	ci right 8.630073e-01	k: 17164	n:20000
ZNF142   20000 perm   5 sec   (4281 perm/sec)   p_kst 8.582000e-01   p_cons 8.650000e-02   p_joint 4.083500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF142.6_5092_20000_0.8582_0.0865_0.40835.png
                gene_name: ZNF142
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 21 percent done.
ZNF155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.110282e-02	ci left: 9.204880e-01	ci right 9.308624e-01	k: 9258	n:10000
Cons ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
KS ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
ZNF155   10000 perm   2 sec   (5923 perm/sec)   p_kst 9.710000e-01   p_cons 4.030000e-01   p_joint 9.258000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF155.6_1633_10000_0.971_0.403_0.9258.png
                gene_name: ZNF155
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 22 percent done.
ZNF165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
Cons ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
KS ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
ZNF165   10000 perm   2 sec   (5648 perm/sec)   p_kst 2.127000e-01   p_cons 5.379000e-01   p_joint 2.939000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF165.6_1470_10000_0.2127_0.5379_0.2939.png
                gene_name: ZNF165
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 24 percent done.
ZNF195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
Cons ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
KS ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
ZNF195   10000 perm   2 sec   (5323 perm/sec)   p_kst 3.366000e-01   p_cons 6.998000e-01   p_joint 7.100000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF195.6_1914_10000_0.3366_0.6998_0.71.png
                gene_name: ZNF195
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 25 percent done.
ZNF202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
Cons ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
ZNF202   10000 perm   2 sec   (5767 perm/sec)   p_kst 6.660000e-02   p_cons 4.020000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
Cons ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
KS ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
ZNF202   20000 perm   4 sec   (5181 perm/sec)   p_kst 6.450000e-02   p_cons 3.760000e-02   p_joint 4.305000e-02

Joint ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
Cons ci ratio: 1.140796e-01	ci left: 3.570254e-02	ci right 4.005421e-02	k: 1135	n:30000
KS ci ratio: 8.550795e-02	ci left: 6.266056e-02	ci right 6.829061e-02	k: 1963	n:30000
ZNF202   30000 perm   6 sec   (4959 perm/sec)   p_kst 6.543333e-02   p_cons 3.783333e-02   p_joint 1.986667e-02

Joint ci ratio: 1.492636e-01	ci left: 1.568358e-02	ci right 1.823724e-02	k: 677	n:40000
Cons ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
KS ci ratio: 7.173006e-02	ci left: 6.697753e-02	ci right 7.198519e-02	k: 2778	n:40000
ZNF202   40000 perm   8 sec   (4814 perm/sec)   p_kst 6.945000e-02   p_cons 3.700000e-02   p_joint 1.692500e-02

Joint ci ratio: 1.126134e-01	ci left: 2.232606e-02	ci right 2.500964e-02	k: 1182	n:50000
Cons ci ratio: 8.991594e-02	ci left: 3.497104e-02	ci right 3.828304e-02	k: 1830	n:50000
KS ci ratio: 6.397703e-02	ci left: 6.760126e-02	ci right 7.208884e-02	k: 3491	n:50000
ZNF202   50000 perm   11 sec   (4698 perm/sec)   p_kst 6.982000e-02   p_cons 3.660000e-02   p_joint 2.364000e-02

Joint ci ratio: 9.516680e-02	ci left: 2.618975e-02	ci right 2.882289e-02	k: 1649	n:60000
Cons ci ratio: 8.210505e-02	ci left: 3.509527e-02	ci right 3.811643e-02	k: 2195	n:60000
KS ci ratio: 5.793160e-02	ci left: 6.884236e-02	ci right 7.296593e-02	k: 4253	n:60000
ZNF202   60000 perm   13 sec   (4601 perm/sec)   p_kst 7.088333e-02   p_cons 3.658333e-02   p_joint 2.748333e-02

Outputting figure to mutsig2_images.part000000000195/ZNF202.6_1971_60000_0.070883_0.036583_0.027483.png
                gene_name: ZNF202
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 27 percent done.
ZNF229
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
KS ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
ZNF229   10000 perm   2 sec   (5238 perm/sec)   p_kst 9.764000e-01   p_cons 5.833000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF229.6_2494_10000_0.9764_0.5833_1.png
                gene_name: ZNF229
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
ZNF238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
KS ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
ZNF238   10000 perm   2 sec   (5520 perm/sec)   p_kst 2.376000e-01   p_cons 3.751000e-01   p_joint 2.945000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF238.6_1604_10000_0.2376_0.3751_0.2945.png
                gene_name: ZNF238
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 30 percent done.
ZNF251
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
Cons ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
KS ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
ZNF251   10000 perm   2 sec   (5648 perm/sec)   p_kst 5.664000e-01   p_cons 9.815000e-01   p_joint 8.748000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF251.6_2032_10000_0.5664_0.9815_0.8748.png
                gene_name: ZNF251
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 31 percent done.
ZNF253
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
Cons ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
KS ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
ZNF253   10000 perm   2 sec   (5946 perm/sec)   p_kst 4.517000e-01   p_cons 1.529000e-01   p_joint 2.931000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF253.6_1516_10000_0.4517_0.1529_0.2931.png
                gene_name: ZNF253
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 33 percent done.
ZNF254
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
ZNF254   10000 perm   2 sec   (5721 perm/sec)   p_kst 6.810000e-01   p_cons 2.194000e-01   p_joint 7.572000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF254.6_1996_10000_0.681_0.2194_0.7572.png
                gene_name: ZNF254
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 34 percent done.
ZNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
Cons ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
ZNF10   10000 perm   2 sec   (5506 perm/sec)   p_kst 1.908000e-01   p_cons 1.373000e-01   p_joint 1.263000e-01

Joint ci ratio: 5.933193e-02	ci left: 1.738079e-01	ci right 1.844856e-01	k: 3582	n:20000
Cons ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
KS ci ratio: 5.597046e-02	ci left: 1.914082e-01	ci right 2.024800e-01	k: 3938	n:20000
ZNF10   20000 perm   4 sec   (4967 perm/sec)   p_kst 1.969000e-01   p_cons 1.435500e-01   p_joint 1.791000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF10.5_1738_20000_0.1969_0.14355_0.1791.png
                gene_name: ZNF10
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 36 percent done.
ZNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
ZNF148   10000 perm   2 sec   (5290 perm/sec)   p_kst 7.708000e-01   p_cons 1.172000e-01   p_joint 2.619000e-01

Joint ci ratio: 3.128392e-02	ci left: 4.328552e-01	ci right 4.466624e-01	k: 8795	n:20000
Cons ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
KS ci ratio: 1.519839e-02	ci left: 7.629436e-01	ci right 7.746781e-01	k: 15377	n:20000
ZNF148   20000 perm   4 sec   (4797 perm/sec)   p_kst 7.688500e-01   p_cons 1.305500e-01   p_joint 4.397500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF148.5_2409_20000_0.76885_0.13055_0.43975.png
                gene_name: ZNF148
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 37 percent done.
ZNF154
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
Cons ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
ZNF154   10000 perm   2 sec   (5950 perm/sec)   p_kst 2.048000e-01   p_cons 5.743000e-01   p_joint 3.895000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF154.5_1326_10000_0.2048_0.5743_0.3895.png
                gene_name: ZNF154
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 39 percent done.
ZNF184
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 3.766434e-02	ci left: 5.100533e-01	ci right 5.297351e-01	k: 5199	n:10000
ZNF184   10000 perm   2 sec   (5201 perm/sec)   p_kst 5.199000e-01   p_cons 3.510000e-01   p_joint 5.677000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF184.5_2276_10000_0.5199_0.351_0.5677.png
                gene_name: ZNF184
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 40 percent done.
ZNF157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362769e-02	ci left: 7.247173e-01	ci right 7.421466e-01	k: 7335	n:10000
Cons ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
KS ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
ZNF157   10000 perm   2 sec   (5967 perm/sec)   p_kst 6.471000e-01   p_cons 9.207000e-01   p_joint 7.335000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF157.4_1537_10000_0.6471_0.9207_0.7335.png
                gene_name: ZNF157
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 42 percent done.
ZNF181
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
Cons ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
ZNF181   10000 perm   2 sec   (6195 perm/sec)   p_kst 4.370000e-02   p_cons 6.398000e-01   p_joint 1.364000e-01

Joint ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
Cons ci ratio: 2.051140e-02	ci left: 6.394772e-01	ci right 6.527802e-01	k: 12923	n:20000
KS ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
ZNF181   20000 perm   4 sec   (5497 perm/sec)   p_kst 4.375000e-02   p_cons 6.461500e-01   p_joint 9.755000e-02

Joint ci ratio: 6.867393e-02	ci left: 9.459236e-02	ci right 1.013524e-01	k: 2938	n:30000
Cons ci ratio: 1.669100e-02	ci left: 6.422638e-01	ci right 6.531076e-01	k: 19431	n:30000
KS ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
ZNF181   30000 perm   6 sec   (5243 perm/sec)   p_kst 4.343333e-02   p_cons 6.477000e-01   p_joint 9.793333e-02

Joint ci ratio: 6.045912e-02	ci left: 9.221750e-02	ci right 9.799144e-02	k: 3803	n:40000
Cons ci ratio: 1.449851e-02	ci left: 6.416166e-01	ci right 6.510121e-01	k: 25853	n:40000
KS ci ratio: 9.224012e-02	ci left: 4.120390e-02	ci right 4.521275e-02	k: 1727	n:40000
ZNF181   40000 perm   8 sec   (5082 perm/sec)   p_kst 4.317500e-02   p_cons 6.463250e-01   p_joint 9.507500e-02

Outputting figure to mutsig2_images.part000000000195/ZNF181.4_1732_40000_0.043175_0.64633_0.095075.png
                gene_name: ZNF181
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 43 percent done.
ZNF197
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
KS ci ratio: 8.741968e-03	ci left: 9.483556e-01	ci right 9.567782e-01	k: 9527	n:10000
ZNF197   10000 perm   2 sec   (5316 perm/sec)   p_kst 9.527000e-01   p_cons 9.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF197.4_3149_10000_0.9527_0.9043_1.png
                gene_name: ZNF197
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ZNF221
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
Cons ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
KS ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
ZNF221   10000 perm   2 sec   (5651 perm/sec)   p_kst 6.016000e-01   p_cons 2.543000e-01   p_joint 4.692000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF221.4_1870_10000_0.6016_0.2543_0.4692.png
                gene_name: ZNF221
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 46 percent done.
ZNF225
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
Cons ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
KS ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
ZNF225   10000 perm   2 sec   (5708 perm/sec)   p_kst 7.831000e-01   p_cons 4.769000e-01   p_joint 8.712000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF225.4_2137_10000_0.7831_0.4769_0.8712.png
                gene_name: ZNF225
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 48 percent done.
ZNF226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
Cons ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
KS ci ratio: 2.904749e-02	ci left: 6.360330e-01	ci right 6.548822e-01	k: 6455	n:10000
ZNF226   10000 perm   2 sec   (5795 perm/sec)   p_kst 6.455000e-01   p_cons 2.228000e-01   p_joint 6.966000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF226.4_2482_10000_0.6455_0.2228_0.6966.png
                gene_name: ZNF226
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 49 percent done.
ZNF227
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
ZNF227   10000 perm   2 sec   (5561 perm/sec)   p_kst 6.181000e-01   p_cons 5.350000e-02   p_joint 1.422000e-01

Joint ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
Cons ci ratio: 1.159572e-01	ci left: 5.090763e-02	ci right 5.722281e-02	k: 1080	n:20000
KS ci ratio: 2.158663e-02	ci left: 6.156891e-01	ci right 6.291753e-01	k: 12449	n:20000
ZNF227   20000 perm   4 sec   (5023 perm/sec)   p_kst 6.224500e-01   p_cons 5.400000e-02   p_joint 1.144500e-01

Joint ci ratio: 6.486209e-02	ci left: 1.050020e-01	ci right 1.120740e-01	k: 3255	n:30000
Cons ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
KS ci ratio: 1.806033e-02	ci left: 6.053892e-01	ci right 6.164560e-01	k: 18328	n:30000
ZNF227   30000 perm   6 sec   (4808 perm/sec)   p_kst 6.109333e-01   p_cons 4.940000e-02   p_joint 1.085000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF227.4_2416_30000_0.61093_0.0494_0.1085.png
                gene_name: ZNF227
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
ZNF235
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
Cons ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
KS ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
ZNF235   10000 perm   2 sec   (5930 perm/sec)   p_kst 3.620000e-01   p_cons 1.934000e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF235.4_2233_10000_0.362_0.1934_0.2793.png
                gene_name: ZNF235
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 52 percent done.
ZNF239
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
Cons ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
KS ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
ZNF239   10000 perm   2 sec   (6316 perm/sec)   p_kst 5.178000e-01   p_cons 2.927000e-01   p_joint 5.409000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF239.4_1381_10000_0.5178_0.2927_0.5409.png
                gene_name: ZNF239
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 54 percent done.
ZNF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
ZNF25   10000 perm   2 sec   (6345 perm/sec)   p_kst 9.403000e-01   p_cons 8.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF25.4_1391_10000_0.9403_0.84_1.png
                gene_name: ZNF25
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ZNF256
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
ZNF256   10000 perm   2 sec   (5804 perm/sec)   p_kst 5.292000e-01   p_cons 5.171000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF256.4_1896_10000_0.5292_0.5171_0.7021.png
                gene_name: ZNF256
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 57 percent done.
ZNF100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
Cons ci ratio: 2.926357e-02	ci left: 6.326140e-01	ci right 6.515032e-01	k: 6421	n:10000
KS ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
ZNF100   10000 perm   2 sec   (6107 perm/sec)   p_kst 1.819000e-01   p_cons 6.421000e-01   p_joint 3.356000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF100.3_1649_10000_0.1819_0.6421_0.3356.png
                gene_name: ZNF100
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
ZNF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
Cons ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
KS ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
ZNF12   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.803000e-01   p_cons 1.785000e-01   p_joint 2.212000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF12.3_2110_10000_0.1803_0.1785_0.2212.png
                gene_name: ZNF12
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 60 percent done.
ZNF121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
KS ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
ZNF121   10000 perm   1 sec   (6892 perm/sec)   p_kst 2.821000e-01   p_cons 4.668000e-01   p_joint 3.087000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF121.3_1181_10000_0.2821_0.4668_0.3087.png
                gene_name: ZNF121
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 61 percent done.
ZNF131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
Cons ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
KS ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
ZNF131   10000 perm   2 sec   (6025 perm/sec)   p_kst 5.200000e-02   p_cons 4.798000e-01   p_joint 2.430000e-01

Joint ci ratio: 8.390194e-02	ci left: 9.425655e-02	ci right 1.025606e-01	k: 1967	n:20000
Cons ci ratio: 2.939103e-02	ci left: 4.637621e-01	ci right 4.776464e-01	k: 9414	n:20000
KS ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
ZNF131   20000 perm   4 sec   (5362 perm/sec)   p_kst 5.035000e-02   p_cons 4.707000e-01   p_joint 9.835000e-02

Joint ci ratio: 6.807213e-02	ci left: 9.613503e-02	ci right 1.029427e-01	k: 2985	n:30000
Cons ci ratio: 2.417078e-02	ci left: 4.614744e-01	ci right 4.727986e-01	k: 14014	n:30000
KS ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
ZNF131   30000 perm   6 sec   (5108 perm/sec)   p_kst 5.120000e-02   p_cons 4.671333e-01   p_joint 9.950000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF131.3_1798_30000_0.0512_0.46713_0.0995.png
                gene_name: ZNF131
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 63 percent done.
ZNF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
Cons ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
ZNF14   10000 perm   2 sec   (6105 perm/sec)   p_kst 5.457000e-01   p_cons 4.361000e-01   p_joint 7.323000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF14.3_1945_10000_0.5457_0.4361_0.7323.png
                gene_name: ZNF14
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 64 percent done.
ZNF141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
Cons ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF141   10000 perm   2 sec   (6275 perm/sec)   p_kst 1   p_cons 2.809000e-01   p_joint 6.239000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF141.3_1441_10000_1_0.2809_0.6239.png
                gene_name: ZNF141
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 66 percent done.
ZNF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
Cons ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KS ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
ZNF16   10000 perm   2 sec   (5898 perm/sec)   p_kst 8.370000e-01   p_cons 2.649000e-01   p_joint 5.249000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF16.3_2057_10000_0.837_0.2649_0.5249.png
                gene_name: ZNF16
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 67 percent done.
ZNF169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
ZNF169   10000 perm   2 sec   (6059 perm/sec)   p_kst 9.865000e-01   p_cons 4.564000e-01   p_joint 7.596000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF169.3_1828_10000_0.9865_0.4564_0.7596.png
                gene_name: ZNF169
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 69 percent done.
ZNF177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
KS ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
ZNF177   10000 perm   1 sec   (6816 perm/sec)   p_kst 4.496000e-01   p_cons 7.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF177.3_1466_10000_0.4496_0.7726_1.png
                gene_name: ZNF177
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ZNF180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
Cons ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
KS ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
ZNF180   10000 perm   2 sec   (6086 perm/sec)   p_kst 2.989000e-01   p_cons 4.173000e-01   p_joint 2.604000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF180.3_2099_10000_0.2989_0.4173_0.2604.png
                gene_name: ZNF180
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 72 percent done.
ZNF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
Cons ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
ZNF2   10000 perm   2 sec   (6424 perm/sec)   p_kst 8.637000e-01   p_cons 1.920000e-02   p_joint 6.670000e-02

Joint ci ratio: 9.873701e-02	ci left: 6.943202e-02	ci right 7.669269e-02	k: 1460	n:20000
Cons ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
KS ci ratio: 1.112643e-02	ci left: 8.563816e-01	ci right 8.660131e-01	k: 17225	n:20000
ZNF2   20000 perm   4 sec   (5668 perm/sec)   p_kst 8.612500e-01   p_cons 1.645000e-02   p_joint 7.300000e-02

Joint ci ratio: 7.269181e-02	ci left: 8.514544e-02	ci right 9.160121e-02	k: 2650	n:30000
Cons ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
KS ci ratio: 9.131914e-03	ci left: 8.560220e-01	ci right 8.639081e-01	k: 25800	n:30000
ZNF2   30000 perm   6 sec   (5393 perm/sec)   p_kst 8.600000e-01   p_cons 1.930000e-02   p_joint 8.833333e-02

Joint ci ratio: 6.069746e-02	ci left: 9.155170e-02	ci right 9.730733e-02	k: 3776	n:40000
Cons ci ratio: 1.417882e-01	ci left: 1.741914e-02	ci right 2.010137e-02	k: 749	n:40000
KS ci ratio: 7.882082e-03	ci left: 8.573691e-01	ci right 8.641785e-01	k: 34432	n:40000
ZNF2   40000 perm   8 sec   (5216 perm/sec)   p_kst 8.608000e-01   p_cons 1.872500e-02   p_joint 9.440000e-02

Joint ci ratio: 5.072408e-02	ci left: 1.039870e-01	ci right 1.094187e-01	k: 5334	n:50000
Cons ci ratio: 1.274094e-01	ci left: 1.739502e-02	ci right 1.978134e-02	k: 928	n:50000
KS ci ratio: 7.060481e-03	ci left: 8.573717e-01	ci right 8.634664e-01	k: 43022	n:50000
ZNF2   50000 perm   10 sec   (5064 perm/sec)   p_kst 8.604400e-01   p_cons 1.856000e-02   p_joint 1.066800e-01

Joint ci ratio: 6.703636e-02	ci left: 5.210637e-02	ci right 5.573693e-02	k: 3234	n:60000
Cons ci ratio: 1.165645e-01	ci left: 1.742060e-02	ci right 1.959299e-02	k: 1109	n:60000
KS ci ratio: 6.466906e-03	ci left: 8.568281e-01	ci right 8.624037e-01	k: 51578	n:60000
ZNF2   60000 perm   12 sec   (4932 perm/sec)   p_kst 8.596333e-01   p_cons 1.848333e-02   p_joint 5.390000e-02

Joint ci ratio: 6.132997e-02	ci left: 5.344917e-02	ci right 5.684497e-02	k: 3859	n:70000
Cons ci ratio: 1.081735e-01	ci left: 1.741728e-02	ci right 1.942292e-02	k: 1288	n:70000
KS ci ratio: 5.996145e-03	ci left: 8.566733e-01	ci right 8.618397e-01	k: 60149	n:70000
ZNF2   70000 perm   15 sec   (4821 perm/sec)   p_kst 8.592714e-01   p_cons 1.840000e-02   p_joint 5.512857e-02

Joint ci ratio: 6.089318e-02	ci left: 4.774832e-02	ci right 5.075947e-02	k: 3939	n:80000
Cons ci ratio: 1.012622e-01	ci left: 1.745559e-02	ci right 1.932957e-02	k: 1470	n:80000
KS ci ratio: 5.618055e-03	ci left: 8.564432e-01	ci right 8.612807e-01	k: 68710	n:80000
ZNF2   80000 perm   17 sec   (4725 perm/sec)   p_kst 8.588750e-01   p_cons 1.837500e-02   p_joint 4.923750e-02

Joint ci ratio: 4.494162e-02	ci left: 7.619006e-02	ci right 7.970386e-02	k: 7014	n:90000
Cons ci ratio: 9.597062e-02	ci left: 1.732583e-02	ci right 1.908320e-02	k: 1637	n:90000
KS ci ratio: 5.306873e-03	ci left: 8.561163e-01	ci right 8.606828e-01	k: 77257	n:90000
ZNF2   90000 perm   19 sec   (4629 perm/sec)   p_kst 8.584111e-01   p_cons 1.818889e-02   p_joint 7.793333e-02

Outputting figure to mutsig2_images.part000000000195/ZNF2.3_1297_90000_0.85841_0.018189_0.077933.png
                gene_name: ZNF2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 73 percent done.
ZNF211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KS ci ratio: 5.351485e-02	ci left: 3.397522e-01	ci right 3.585358e-01	k: 3491	n:10000
ZNF211   10000 perm   2 sec   (6201 perm/sec)   p_kst 3.491000e-01   p_cons 1.175000e-01   p_joint 1.544000e-01

Joint ci ratio: 6.443560e-02	ci left: 1.510951e-01	ci right 1.612051e-01	k: 3122	n:20000
Cons ci ratio: 7.631289e-02	ci left: 1.120847e-01	ci right 1.210271e-01	k: 2330	n:20000
KS ci ratio: 3.788648e-02	ci left: 3.419932e-01	ci right 3.552508e-01	k: 6972	n:20000
ZNF211   20000 perm   4 sec   (5530 perm/sec)   p_kst 3.486000e-01   p_cons 1.165000e-01   p_joint 1.561000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF211.3_1750_20000_0.3486_0.1165_0.1561.png
                gene_name: ZNF211
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 75 percent done.
ZNF234
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
Cons ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
KS ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
ZNF234   10000 perm   2 sec   (5996 perm/sec)   p_kst 5.141000e-01   p_cons 8.359000e-01   p_joint 9.323000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF234.3_2119_10000_0.5141_0.8359_0.9323.png
                gene_name: ZNF234
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 76 percent done.
ZMYND19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
Cons ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
KS ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
ZMYND19   10000 perm   1 sec   (7270 perm/sec)   p_kst 2.730000e-01   p_cons 4.670000e-01   p_joint 4.879000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND19.2_708_10000_0.273_0.467_0.4879.png
                gene_name: ZMYND19
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
ZNF114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
Cons ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
KS ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
ZNF114   10000 perm   2 sec   (6659 perm/sec)   p_kst 9.043000e-01   p_cons 1.669000e-01   p_joint 3.576000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF114.2_1266_10000_0.9043_0.1669_0.3576.png
                gene_name: ZNF114
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 79 percent done.
ZNF117
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 81 percent done.
ZNF134
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
ZNF134   10000 perm   1 sec   (6865 perm/sec)   p_kst 2.353000e-01   p_cons 1.176000e-01   p_joint 2.412000e-01

Joint ci ratio: 5.570643e-02	ci left: 1.928922e-01	ci right 2.039956e-01	k: 3968	n:20000
Cons ci ratio: 7.288606e-02	ci left: 1.217258e-01	ci right 1.309832e-01	k: 2526	n:20000
KS ci ratio: 5.005255e-02	ci left: 2.287907e-01	ci right 2.405865e-01	k: 4693	n:20000
ZNF134   20000 perm   3 sec   (6043 perm/sec)   p_kst 2.346500e-01   p_cons 1.263000e-01   p_joint 1.984000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF134.2_1292_20000_0.23465_0.1263_0.1984.png
                gene_name: ZNF134
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 82 percent done.
ZNF136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
Cons ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
KS ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
ZNF136   10000 perm   2 sec   (6480 perm/sec)   p_kst 7.644000e-01   p_cons 5.100000e-02   p_joint 2.167000e-01

Joint ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
Cons ci ratio: 1.208834e-01	ci left: 4.692297e-02	ci right 5.300872e-02	k: 998	n:20000
KS ci ratio: 1.544194e-02	ci left: 7.571948e-01	ci right 7.690286e-01	k: 15263	n:20000
ZNF136   20000 perm   3 sec   (5742 perm/sec)   p_kst 7.631500e-01   p_cons 4.990000e-02   p_joint 7.870000e-02

Joint ci ratio: 6.262937e-02	ci left: 1.118710e-01	ci right 1.191370e-01	k: 3464	n:30000
Cons ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
KS ci ratio: 1.261121e-02	ci left: 7.582131e-01	ci right 7.678692e-01	k: 22892	n:30000
ZNF136   30000 perm   6 sec   (5448 perm/sec)   p_kst 7.630667e-01   p_cons 4.880000e-02   p_joint 1.154667e-01

Outputting figure to mutsig2_images.part000000000195/ZNF136.2_1639_30000_0.76307_0.0488_0.11547.png
                gene_name: ZNF136
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 84 percent done.
ZNF140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
ZNF140   10000 perm   2 sec   (6581 perm/sec)   p_kst 2.328000e-01   p_cons 8.800000e-03   p_joint 1.370000e-02

Joint ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 5.002470e-02	ci left: 2.289890e-01	ci right 2.407882e-01	k: 4697	n:20000
ZNF140   20000 perm   3 sec   (5833 perm/sec)   p_kst 2.348500e-01   p_cons 9.200000e-03   p_joint 1.370000e-02

Joint ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
Cons ci ratio: 2.286735e-01	ci left: 8.590510e-03	ci right 1.083930e-02	k: 290	n:30000
KS ci ratio: 4.084134e-02	ci left: 2.301120e-01	ci right 2.397394e-01	k: 7047	n:30000
ZNF140   30000 perm   5 sec   (5548 perm/sec)   p_kst 2.349000e-01   p_cons 9.666667e-03   p_joint 1.340000e-02

Joint ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
Cons ci ratio: 2.025678e-01	ci left: 8.335114e-03	ci right 1.023715e-02	k: 370	n:40000
KS ci ratio: 3.546672e-02	ci left: 2.297834e-01	ci right 2.381052e-01	k: 9357	n:40000
ZNF140   40000 perm   7 sec   (5344 perm/sec)   p_kst 2.339250e-01   p_cons 9.250000e-03   p_joint 1.347500e-02

Joint ci ratio: 1.458571e-01	ci left: 1.320050e-02	ci right 1.529645e-02	k: 711	n:50000
Cons ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
KS ci ratio: 3.174102e-02	ci left: 2.300161e-01	ci right 2.374548e-01	k: 11686	n:50000
ZNF140   50000 perm   10 sec   (5203 perm/sec)   p_kst 2.337200e-01   p_cons 9.380000e-03   p_joint 1.422000e-02

Joint ci ratio: 1.405415e-01	ci left: 1.189975e-02	ci right 1.371450e-02	k: 767	n:60000
Cons ci ratio: 1.638435e-01	ci left: 8.675324e-03	ci right 1.023934e-02	k: 566	n:60000
KS ci ratio: 2.894370e-02	ci left: 2.307330e-01	ci right 2.375260e-01	k: 14047	n:60000
ZNF140   60000 perm   12 sec   (5074 perm/sec)   p_kst 2.341167e-01   p_cons 9.433333e-03   p_joint 1.278333e-02

Joint ci ratio: 1.402110e-01	ci left: 1.026809e-02	ci right 1.182998e-02	k: 772	n:70000
Cons ci ratio: 1.503757e-01	ci left: 8.890904e-03	ci right 1.035018e-02	k: 672	n:70000
KS ci ratio: 2.681518e-02	ci left: 2.307396e-01	ci right 2.370253e-01	k: 16371	n:70000
ZNF140   70000 perm   14 sec   (4948 perm/sec)   p_kst 2.338714e-01   p_cons 9.600000e-03   p_joint 1.102857e-02

Joint ci ratio: 1.341372e-01	ci left: 9.853554e-03	ci right 1.128227e-02	k: 844	n:80000
Cons ci ratio: 1.417983e-01	ci left: 8.791150e-03	ci right 1.014478e-02	k: 756	n:80000
KS ci ratio: 2.502558e-02	ci left: 2.317666e-01	ci right 2.376526e-01	k: 18776	n:80000
ZNF140   80000 perm   17 sec   (4843 perm/sec)   p_kst 2.347000e-01   p_cons 9.450000e-03   p_joint 1.055000e-02

Joint ci ratio: 1.270496e-01	ci left: 9.801280e-03	ci right 1.114167e-02	k: 941	n:90000
Cons ci ratio: 1.333434e-01	ci left: 8.876546e-03	ci right 1.015537e-02	k: 855	n:90000
KS ci ratio: 2.360394e-02	ci left: 2.317903e-01	ci right 2.373379e-01	k: 21110	n:90000
ZNF140   90000 perm   19 sec   (4746 perm/sec)   p_kst 2.345556e-01   p_cons 9.500000e-03   p_joint 1.045556e-02

Joint ci ratio: 1.280812e-01	ci left: 8.685296e-03	ci right 9.883426e-03	k: 927	n:100000
Cons ci ratio: 1.271851e-01	ci left: 8.811181e-03	ci right 1.001753e-02	k: 940	n:100000
KS ci ratio: 2.235014e-02	ci left: 2.326139e-01	ci right 2.378815e-01	k: 23524	n:100000
ZNF140   100000 perm   22 sec   (4647 perm/sec)   p_kst 2.352400e-01   p_cons 9.400000e-03   p_joint 9.270000e-03

Joint ci ratio: 1.286259e-01	ci left: 7.833907e-03	ci right 8.919526e-03	k: 920	n:110000
Cons ci ratio: 1.203367e-01	ci left: 8.979267e-03	ci right 1.013772e-02	k: 1050	n:110000
KS ci ratio: 2.132861e-02	ci left: 2.324244e-01	ci right 2.374441e-01	k: 25842	n:110000
ZNF140   110000 perm   24 sec   (4555 perm/sec)   p_kst 2.349273e-01   p_cons 9.545455e-03   p_joint 8.363636e-03

Joint ci ratio: 1.170066e-01	ci left: 8.724171e-03	ci right 9.816409e-03	k: 1111	n:120000
Cons ci ratio: 1.155983e-01	ci left: 8.942682e-03	ci right 1.004788e-02	k: 1138	n:120000
KS ci ratio: 2.038203e-02	ci left: 2.332095e-01	ci right 2.380200e-01	k: 28273	n:120000
ZNF140   120000 perm   27 sec   (4472 perm/sec)   p_kst 2.356083e-01   p_cons 9.483333e-03   p_joint 9.258333e-03

Joint ci ratio: 1.129698e-01	ci left: 8.658221e-03	ci right 9.702310e-03	k: 1192	n:130000
Cons ci ratio: 1.111050e-01	ci left: 8.957366e-03	ci right 1.001853e-02	k: 1232	n:130000
KS ci ratio: 1.960049e-02	ci left: 2.329732e-01	ci right 2.375924e-01	k: 30586	n:130000
ZNF140   130000 perm   30 sec   (4395 perm/sec)   p_kst 2.352769e-01   p_cons 9.476923e-03   p_joint 9.169231e-03

Joint ci ratio: 1.043539e-01	ci left: 9.457566e-03	ci right 1.050574e-02	k: 1396	n:140000
Cons ci ratio: 1.072203e-01	ci left: 8.949807e-03	ci right 9.970665e-03	k: 1323	n:140000
KS ci ratio: 1.887434e-02	ci left: 2.333078e-01	ci right 2.377603e-01	k: 32974	n:140000
ZNF140   140000 perm   32 sec   (4320 perm/sec)   p_kst 2.355286e-01   p_cons 9.450000e-03   p_joint 9.971429e-03

Joint ci ratio: 9.960541e-02	ci left: 9.710673e-03	ci right 1.073506e-02	k: 1532	n:150000
Cons ci ratio: 1.036796e-01	ci left: 8.950311e-03	ci right 9.935457e-03	k: 1415	n:150000
KS ci ratio: 1.824054e-02	ci left: 2.332615e-01	ci right 2.375621e-01	k: 35311	n:150000
ZNF140   150000 perm   35 sec   (4253 perm/sec)   p_kst 2.354067e-01   p_cons 9.433333e-03   p_joint 1.021333e-02

Joint ci ratio: 9.571192e-02	ci left: 9.878163e-03	ci right 1.087720e-02	k: 1659	n:160000
Cons ci ratio: 1.005016e-01	ci left: 8.945144e-03	ci right 9.897760e-03	k: 1506	n:160000
KS ci ratio: 1.767180e-02	ci left: 2.331173e-01	ci right 2.372798e-01	k: 37631	n:160000
ZNF140   160000 perm   38 sec   (4181 perm/sec)   p_kst 2.351938e-01   p_cons 9.412500e-03   p_joint 1.036875e-02

Joint ci ratio: 9.314146e-02	ci left: 9.831223e-03	ci right 1.079735e-02	k: 1752	n:170000
Cons ci ratio: 9.710947e-02	ci left: 9.032838e-03	ci right 9.960475e-03	k: 1613	n:170000
KS ci ratio: 1.714725e-02	ci left: 2.331151e-01	ci right 2.371528e-01	k: 39972	n:170000
ZNF140   170000 perm   41 sec   (4109 perm/sec)   p_kst 2.351294e-01   p_cons 9.488235e-03   p_joint 1.030588e-02

Outputting figure to mutsig2_images.part000000000195/ZNF140.2_1390_170000_0.23513_0.0094882_0.010306.png
                gene_name: ZNF140
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0095 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0100 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0098 
    ci_joint_bounds_right: 0.011 

Current progress: 85 percent done.
ZNF167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
ZNF167   10000 perm   2 sec   (6286 perm/sec)   p_kst 1.578000e-01   p_cons 4.188000e-01   p_joint 3.458000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF167.2_2309_10000_0.1578_0.4188_0.3458.png
                gene_name: ZNF167
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 87 percent done.
ZNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.415983e-02	ci left: 7.158309e-01	ci right 7.334380e-01	k: 7247	n:10000
Cons ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
KS ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
ZNF17   10000 perm   2 sec   (6370 perm/sec)   p_kst 7.684000e-01   p_cons 6.881000e-01   p_joint 7.247000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF17.2_2001_10000_0.7684_0.6881_0.7247.png
                gene_name: ZNF17
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
ZNF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
Cons ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
KS ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
ZNF18   10000 perm   2 sec   (6438 perm/sec)   p_kst 7.556000e-01   p_cons 3.791000e-01   p_joint 4.296000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF18.2_1674_10000_0.7556_0.3791_0.4296.png
                gene_name: ZNF18
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 90 percent done.
ZNF189
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
Cons ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
KS ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
ZNF189   10000 perm   2 sec   (6294 perm/sec)   p_kst 5.540000e-01   p_cons 2.028000e-01   p_joint 9.662000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF189.2_1893_10000_0.554_0.2028_0.9662.png
                gene_name: ZNF189
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 91 percent done.
ZNF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
Cons ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
KS ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
ZNF19   10000 perm   2 sec   (6583 perm/sec)   p_kst 9.413000e-01   p_cons 5.049000e-01   p_joint 7.750000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF19.2_1393_10000_0.9413_0.5049_0.775.png
                gene_name: ZNF19
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 93 percent done.
ZNF192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
ZNF192   10000 perm   2 sec   (6391 perm/sec)   p_kst 2.176000e-01   p_cons 5.498000e-01   p_joint 6.836000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF192.2_1757_10000_0.2176_0.5498_0.6836.png
                gene_name: ZNF192
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 94 percent done.
ZNF193
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.936779e-02	ci left: 7.958786e-01	ci right 8.115441e-01	k: 8038	n:10000
Cons ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
KS ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
ZNF193   10000 perm   1 sec   (6722 perm/sec)   p_kst 3.164000e-01   p_cons 5.449000e-01   p_joint 8.038000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF193.2_1197_10000_0.3164_0.5449_0.8038.png
                gene_name: ZNF193
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 96 percent done.
ZNF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
ZNF20   10000 perm   2 sec   (6477 perm/sec)   p_kst 5.278000e-01   p_cons 1.029000e-01   p_joint 1.079000e-01

Joint ci ratio: 5.347137e-02	ci left: 2.061051e-01	ci right 2.174788e-01	k: 4235	n:20000
Cons ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
KS ci ratio: 2.626617e-02	ci left: 5.199020e-01	ci right 5.337902e-01	k: 10537	n:20000
ZNF20   20000 perm   3 sec   (5738 perm/sec)   p_kst 5.268500e-01   p_cons 1.061500e-01   p_joint 2.117500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF20.2_1615_20000_0.52685_0.10615_0.21175.png
                gene_name: ZNF20
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 97 percent done.
ZNF213
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
KS ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
ZNF213   10000 perm   2 sec   (6582 perm/sec)   p_kst 7.970000e-01   p_cons 1.652000e-01   p_joint 1.811000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF213.2_1400_10000_0.797_0.1652_0.1811.png
                gene_name: ZNF213
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 99 percent done.
ZNF233
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
Cons ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
ZNF233   10000 perm   2 sec   (6268 perm/sec)   p_kst 1.533000e-01   p_cons 5.356000e-01   p_joint 3.173000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF233.2_2029_10000_0.1533_0.5356_0.3173.png
                gene_name: ZNF233
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000195
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 195 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422718: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000196> was used as the working directory.
Started at Wed Oct 24 18:11:41 2012
Results reported at Wed Oct 24 18:23:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000196.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000196.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 196  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000196.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    710.59 sec.
    Max Memory :      5311 MB
    Max Swap   :      7607 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
196
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 196
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 196: processing genes 17643 - 17732
Calculating significance of each gene.
Using projection method.
17643	ZNF257	1.191606e-03
17644	ZNF259	6.150339e-01
17645	ZNF260	1.089439e-01
17646	ZNF263	5.297874e-01
17647	ZNF264	6.884219e-01
17648	ZNF266	7.255119e-01
17649	ZNF267	6.308417e-01
17650	ZNF268	1.247720e-05
17651	ZNF273	9.182071e-01
17652	ZNF274	7.000430e-01
17653	ZNF275	5.159254e-01
17654	ZNF276	5.904891e-01
17655	ZNF277	7.999638e-01
17656	ZNF28	3.526779e-01
17657	ZNF280A	1.971070e-01
17658	ZNF280B	2.575197e-01
17659	ZNF280C	9.070611e-01
17660	ZNF280D	8.118308e-01
17661	ZNF281	8.238302e-01
17662	ZNF282	7.807992e-01
17663	ZNF283	1
17664	ZNF284	7.923701e-01
17665	ZNF285	4.909108e-02
17666	ZNF286A	5.957098e-01
17667	ZNF286B	1
17668	ZNF287	4.785855e-01
17669	ZNF292	6.822413e-01
17670	ZNF295	9.975507e-01
17671	ZNF296	1
17672	ZNF3	8.505478e-01
17673	ZNF30	1
17674	ZNF300	2.504424e-01
17675	ZNF302	1
17676	ZNF304	8.192805e-02
17677	ZNF311	8.910398e-01
17678	ZNF317	1.457524e-01
17679	ZNF318	6.453287e-01
17680	ZNF319	9.646122e-01
17681	ZNF32	5.400554e-01
17682	ZNF320	7.164594e-01
17683	ZNF321	5.480106e-01
17684	ZNF322A	7.753234e-01
17685	ZNF322B	4.935240e-01
17686	ZNF323	6.719706e-01
17687	ZNF324	9.597889e-01
17688	ZNF324B	6.779849e-01
17689	ZNF326	5.270309e-01
17690	ZNF329	7.277930e-01
17691	ZNF330	3.405056e-01
17692	ZNF331	1.065144e-01
17693	ZNF333	1
17694	ZNF334	2.643209e-01
17695	ZNF335	1
17696	ZNF337	1
17697	ZNF33A	1
17698	ZNF33B	5.977213e-01
17699	ZNF34	6.661591e-01
17700	ZNF341	9.891193e-01
17701	ZNF343	5.383655e-01
17702	ZNF345	8.487348e-01
17703	ZNF346	7.991758e-02
17704	ZNF347	6.948301e-01
17705	ZNF35	8.392492e-01
17706	ZNF350	4.052656e-01
17707	ZNF354A	8.350079e-01
17708	ZNF354B	7.131537e-01
17709	ZNF354C	1
17710	ZNF358	1
17711	ZNF362	9.010086e-01
17712	ZNF365	1
17713	ZNF366	1
17714	ZNF367	7.577180e-01
17715	ZNF37A	5.393303e-01
17716	ZNF382	1
17717	ZNF383	8.106622e-01
17718	ZNF384	6.732215e-01
17719	ZNF385A	1
17720	ZNF385B	8.824233e-01
17721	ZNF385D	3.462681e-01
17722	ZNF391	4.750565e-01
17723	ZNF394	9.849263e-01
17724	ZNF395	1
17725	ZNF396	7.829446e-01
17726	ZNF397	3.189237e-01
17727	ZNF397OS	7.889248e-01
17728	ZNF398	2.356639e-01
17729	ZNF404	4.351863e-01
In gene ZNF407 the following bins exceed PROBCAP:
    LUAD-17-Z004-TP	categ 6	N = 6197    n = 1	mu =   2.01e-07
17730	ZNF407	9.963583e-01
17731	ZNF408	1
17732	ZNF41	8.203898e-01
Done

Running MutSig 2:
Scatter job 196: processing genes 17643 - 17732
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF385D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
Cons ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
KS ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
ZNF385D   10000 perm   2 sec   (5038 perm/sec)   p_kst 2.954000e-01   p_cons 8.458000e-01   p_joint 5.078000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF385D.15_1220_10000_0.2954_0.8458_0.5078.png
                gene_name: ZNF385D
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 1 percent done.
ZNF257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
Cons ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
KS ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
ZNF257   10000 perm   2 sec   (5944 perm/sec)   p_kst 5.279000e-01   p_cons 9.915000e-01   p_joint 6.909000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF257.13_1708_10000_0.5279_0.9915_0.6909.png
                gene_name: ZNF257
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 3 percent done.
ZNF292
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
KS ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
ZNF292   10000 perm   2 sec   (4128 perm/sec)   p_kst 2.548000e-01   p_cons 3.020000e-02   p_joint 7.600000e-02

Joint ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
Cons ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
KS ci ratio: 4.698830e-02	ci left: 2.520459e-01	ci right 2.642245e-01	k: 5162	n:20000
ZNF292   20000 perm   5 sec   (3801 perm/sec)   p_kst 2.581000e-01   p_cons 3.170000e-02   p_joint 6.015000e-02

Joint ci ratio: 1.018720e-01	ci left: 4.463242e-02	ci right 4.945578e-02	k: 1410	n:30000
Cons ci ratio: 1.270260e-01	ci left: 2.880916e-02	ci right 3.274907e-02	k: 922	n:30000
KS ci ratio: 3.818145e-02	ci left: 2.550101e-01	ci right 2.649697e-01	k: 7799	n:30000
ZNF292   30000 perm   8 sec   (3583 perm/sec)   p_kst 2.599667e-01   p_cons 3.073333e-02   p_joint 4.700000e-02

Joint ci ratio: 8.079701e-02	ci left: 5.332517e-02	ci right 5.783962e-02	k: 2222	n:40000
Cons ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
KS ci ratio: 3.319121e-02	ci left: 2.542396e-01	ci right 2.628455e-01	k: 10341	n:40000
ZNF292   40000 perm   11 sec   (3518 perm/sec)   p_kst 2.585250e-01   p_cons 3.057500e-02   p_joint 5.555000e-02

Joint ci ratio: 7.683568e-02	ci left: 4.757567e-02	ci right 5.139685e-02	k: 2473	n:50000
Cons ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
KS ci ratio: 2.978268e-02	ci left: 2.534725e-01	ci right 2.611557e-01	k: 12865	n:50000
ZNF292   50000 perm   14 sec   (3473 perm/sec)   p_kst 2.573000e-01   p_cons 3.026000e-02   p_joint 4.946000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF292.13_8204_50000_0.2573_0.03026_0.04946.png
                gene_name: ZNF292
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 4 percent done.
ZNF318
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.901722e-02	ci left: 8.016636e-01	ci right 8.171557e-01	k: 8095	n:10000
Cons ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
KS ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
ZNF318   10000 perm   3 sec   (3927 perm/sec)   p_kst 7.523000e-01   p_cons 4.800000e-01   p_joint 8.095000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF318.13_6880_10000_0.7523_0.48_0.8095.png
                gene_name: ZNF318
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 6 percent done.
ZNF407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
ZNF407   10000 perm   2 sec   (4265 perm/sec)   p_kst 4.633000e-01   p_cons 1.412000e-01   p_joint 3.283000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF407.11_6909_10000_0.4633_0.1412_0.3283.png
                gene_name: ZNF407
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 7 percent done.
ZNF343
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
KS ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
ZNF343   10000 perm   2 sec   (5476 perm/sec)   p_kst 2.493000e-01   p_cons 2.979000e-01   p_joint 2.380000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF343.8_1816_10000_0.2493_0.2979_0.238.png
                gene_name: ZNF343
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 9 percent done.
ZNF260
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
Cons ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
KS ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
ZNF260   10000 perm   2 sec   (5732 perm/sec)   p_kst 1.091000e-01   p_cons 1.680000e-02   p_joint 3.620000e-02

Joint ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
Cons ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
KS ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
ZNF260   20000 perm   4 sec   (5247 perm/sec)   p_kst 1.075500e-01   p_cons 1.735000e-02   p_joint 2.410000e-02

Joint ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
Cons ci ratio: 1.734854e-01	ci left: 1.528021e-02	ci right 1.821445e-02	k: 501	n:30000
KS ci ratio: 6.546129e-02	ci left: 1.032608e-01	ci right 1.102822e-01	k: 3202	n:30000
ZNF260   30000 perm   6 sec   (5043 perm/sec)   p_kst 1.067333e-01   p_cons 1.670000e-02   p_joint 2.353333e-02

Joint ci ratio: 1.459064e-01	ci left: 1.643041e-02	ci right 1.904027e-02	k: 708	n:40000
Cons ci ratio: 1.499399e-01	ci left: 1.553911e-02	ci right 1.808174e-02	k: 671	n:40000
KS ci ratio: 5.637898e-02	ci left: 1.047769e-01	ci right 1.108802e-01	k: 4312	n:40000
ZNF260   40000 perm   8 sec   (4898 perm/sec)   p_kst 1.078000e-01   p_cons 1.677500e-02   p_joint 1.770000e-02

Joint ci ratio: 1.230285e-01	ci left: 1.867441e-02	ci right 2.114177e-02	k: 994	n:50000
Cons ci ratio: 1.350125e-01	ci left: 1.545955e-02	ci right 1.771708e-02	k: 828	n:50000
KS ci ratio: 5.081476e-02	ci left: 1.036508e-01	ci right 1.090750e-01	k: 5317	n:50000
ZNF260   50000 perm   10 sec   (4788 perm/sec)   p_kst 1.063400e-01   p_cons 1.656000e-02   p_joint 1.988000e-02

Joint ci ratio: 9.737371e-02	ci left: 2.501790e-02	ci right 2.759487e-02	k: 1577	n:60000
Cons ci ratio: 1.223025e-01	ci left: 1.580289e-02	ci right 1.787756e-02	k: 1009	n:60000
KS ci ratio: 4.634919e-02	ci left: 1.040425e-01	ci right 1.089957e-01	k: 6390	n:60000
ZNF260   60000 perm   13 sec   (4688 perm/sec)   p_kst 1.065000e-01   p_cons 1.681667e-02   p_joint 2.628333e-02

Joint ci ratio: 9.696594e-02	ci left: 2.170692e-02	ci right 2.393288e-02	k: 1596	n:70000
Cons ci ratio: 1.146402e-01	ci left: 1.548595e-02	ci right 1.738301e-02	k: 1149	n:70000
KS ci ratio: 4.300525e-02	ci left: 1.038137e-01	ci right 1.083905e-01	k: 7426	n:70000
ZNF260   70000 perm   15 sec   (4603 perm/sec)   p_kst 1.060857e-01   p_cons 1.641429e-02   p_joint 2.280000e-02

Joint ci ratio: 9.918714e-02	ci left: 1.819932e-02	ci right 2.011078e-02	k: 1531	n:80000
Cons ci ratio: 1.071238e-01	ci left: 1.557990e-02	ci right 1.735542e-02	k: 1316	n:80000
KS ci ratio: 4.016954e-02	ci left: 1.042342e-01	ci right 1.085194e-01	k: 8509	n:80000
ZNF260   80000 perm   18 sec   (4527 perm/sec)   p_kst 1.063625e-01   p_cons 1.645000e-02   p_joint 1.913750e-02

Joint ci ratio: 7.644245e-02	ci left: 2.730261e-02	ci right 2.948349e-02	k: 2554	n:90000
Cons ci ratio: 1.004005e-01	ci left: 1.581867e-02	ci right 1.750158e-02	k: 1498	n:90000
KS ci ratio: 3.782306e-02	ci left: 1.046020e-01	ci right 1.086456e-01	k: 9595	n:90000
ZNF260   90000 perm   20 sec   (4446 perm/sec)   p_kst 1.066111e-01   p_cons 1.664444e-02   p_joint 2.837778e-02

Joint ci ratio: 7.602141e-02	ci left: 2.491449e-02	ci right 2.689314e-02	k: 2589	n:100000
Cons ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
KS ci ratio: 3.581865e-02	ci left: 1.050409e-01	ci right 1.088819e-01	k: 10695	n:100000
ZNF260   100000 perm   23 sec   (4378 perm/sec)   p_kst 1.069500e-01   p_cons 1.665000e-02   p_joint 2.589000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF260.7_1243_100000_0.10695_0.01665_0.02589.png
                gene_name: ZNF260
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 10 percent done.
ZNF268
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
Cons ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
KS ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
ZNF268   10000 perm   1 sec   (7184 perm/sec)   p_kst 4.420000e-01   p_cons 1.440000e-02   p_joint 1.847000e-01

Joint ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
Cons ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
KS ci ratio: 3.095908e-02	ci left: 4.379961e-01	ci right 4.518199e-01	k: 8898	n:20000
ZNF268   20000 perm   3 sec   (6348 perm/sec)   p_kst 4.449000e-01   p_cons 1.540000e-02   p_joint 7.485000e-02

Joint ci ratio: 6.947606e-02	ci left: 9.259058e-02	ci right 9.928791e-02	k: 2877	n:30000
Cons ci ratio: 1.855002e-01	ci left: 1.330502e-02	ci right 1.605681e-02	k: 439	n:30000
KS ci ratio: 2.543625e-02	ci left: 4.362030e-01	ci right 4.474749e-01	k: 13255	n:30000
ZNF268   30000 perm   5 sec   (5932 perm/sec)   p_kst 4.418333e-01   p_cons 1.463333e-02   p_joint 9.590000e-02

Joint ci ratio: 6.571021e-02	ci left: 7.900907e-02	ci right 8.440184e-02	k: 3267	n:40000
Cons ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
KS ci ratio: 2.197784e-02	ci left: 4.380988e-01	ci right 4.478594e-01	k: 17719	n:40000
ZNF268   40000 perm   7 sec   (5756 perm/sec)   p_kst 4.429750e-01   p_cons 1.460000e-02   p_joint 8.167500e-02

Joint ci ratio: 6.686333e-02	ci left: 6.216535e-02	ci right 6.648540e-02	k: 3215	n:50000
Cons ci ratio: 1.366132e-01	ci left: 1.509227e-02	ci right 1.732441e-02	k: 809	n:50000
KS ci ratio: 1.953454e-02	ci left: 4.417162e-01	ci right 4.504501e-01	k: 22304	n:50000
ZNF268   50000 perm   9 sec   (5587 perm/sec)   p_kst 4.460800e-01   p_cons 1.618000e-02   p_joint 6.430000e-02

Joint ci ratio: 5.739607e-02	ci left: 7.005922e-02	ci right 7.421561e-02	k: 4327	n:60000
Cons ci ratio: 1.249065e-01	ci left: 1.514036e-02	ci right 1.717350e-02	k: 968	n:60000
KS ci ratio: 1.785417e-02	ci left: 4.415008e-01	ci right 4.494711e-01	k: 26729	n:60000
ZNF268   60000 perm   11 sec   (5470 perm/sec)   p_kst 4.454833e-01   p_cons 1.613333e-02   p_joint 7.211667e-02

Joint ci ratio: 5.141052e-02	ci left: 7.471083e-02	ci right 7.866720e-02	k: 5367	n:70000
Cons ci ratio: 1.172052e-01	ci left: 1.480595e-02	ci right 1.666308e-02	k: 1100	n:70000
KS ci ratio: 1.654504e-02	ci left: 4.413422e-01	ci right 4.487195e-01	k: 31152	n:70000
ZNF268   70000 perm   13 sec   (5349 perm/sec)   p_kst 4.450286e-01   p_cons 1.571429e-02   p_joint 7.667143e-02

Joint ci ratio: 4.717540e-02	ci left: 7.757264e-02	ci right 8.133292e-02	k: 6355	n:80000
Cons ci ratio: 1.108631e-01	ci left: 1.453376e-02	ci right 1.625165e-02	k: 1230	n:80000
KS ci ratio: 1.546645e-02	ci left: 4.419018e-01	ci right 4.488022e-01	k: 35628	n:80000
ZNF268   80000 perm   15 sec   (5237 perm/sec)   p_kst 4.453500e-01   p_cons 1.537500e-02   p_joint 7.943750e-02

Joint ci ratio: 4.365852e-02	ci left: 8.041346e-02	ci right 8.401352e-02	k: 7398	n:90000
Cons ci ratio: 1.045948e-01	ci left: 1.456231e-02	ci right 1.618026e-02	k: 1382	n:90000
KS ci ratio: 1.458965e-02	ci left: 4.418383e-01	ci right 4.483430e-01	k: 40058	n:90000
ZNF268   90000 perm   18 sec   (5140 perm/sec)   p_kst 4.450889e-01   p_cons 1.535556e-02   p_joint 8.220000e-02

Joint ci ratio: 4.205143e-02	ci left: 7.826631e-02	ci right 8.163810e-02	k: 7994	n:100000
Cons ci ratio: 9.944666e-02	ci left: 1.453857e-02	ci right 1.606973e-02	k: 1529	n:100000
KS ci ratio: 1.385413e-02	ci left: 4.415367e-01	ci right 4.477065e-01	k: 44462	n:100000
ZNF268   100000 perm   20 sec   (5030 perm/sec)   p_kst 4.446200e-01   p_cons 1.529000e-02   p_joint 7.994000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF268.3_583_100000_0.44462_0.01529_0.07994.png
                gene_name: ZNF268
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.082 

Current progress: 11 percent done.
ZNF304
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
Cons ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
KS ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
ZNF304   10000 perm   2 sec   (5861 perm/sec)   p_kst 6.536000e-01   p_cons 3.724000e-01   p_joint 5.657000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF304.7_1992_10000_0.6536_0.3724_0.5657.png
                gene_name: ZNF304
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 13 percent done.
ZNF317
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
Cons ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
KS ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
ZNF317   10000 perm   2 sec   (5584 perm/sec)   p_kst 2.670000e-01   p_cons 7.310000e-02   p_joint 8.990000e-02

Joint ci ratio: 7.986614e-02	ci left: 1.031904e-01	ci right 1.118241e-01	k: 2149	n:20000
Cons ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
KS ci ratio: 4.561772e-02	ci left: 2.634589e-01	ci right 2.758082e-01	k: 5392	n:20000
ZNF317   20000 perm   4 sec   (5100 perm/sec)   p_kst 2.696000e-01   p_cons 7.125000e-02   p_joint 1.074500e-01

Joint ci ratio: 6.325014e-02	ci left: 1.098986e-01	ci right 1.171098e-01	k: 3404	n:30000
Cons ci ratio: 8.337044e-02	ci left: 6.576487e-02	ci right 7.151901e-02	k: 2058	n:30000
KS ci ratio: 3.745436e-02	ci left: 2.624307e-01	ci right 2.724810e-01	k: 8023	n:30000
ZNF317   30000 perm   6 sec   (4912 perm/sec)   p_kst 2.674333e-01   p_cons 6.860000e-02   p_joint 1.134667e-01

Outputting figure to mutsig2_images.part000000000196/ZNF317.7_1812_30000_0.26743_0.0686_0.11347.png
                gene_name: ZNF317
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
ZNF33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
ZNF33A   10000 perm   2 sec   (5882 perm/sec)   p_kst 3.145000e-01   p_cons 7.740000e-01   p_joint 5.163000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF33A.7_2452_10000_0.3145_0.774_0.5163.png
                gene_name: ZNF33A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 16 percent done.
ZNF347
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
Cons ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
KS ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
ZNF347   10000 perm   2 sec   (5375 perm/sec)   p_kst 5.570000e-02   p_cons 4.008000e-01   p_joint 1.499000e-01

Joint ci ratio: 6.869877e-02	ci left: 1.351694e-01	ci right 1.448355e-01	k: 2799	n:20000
Cons ci ratio: 3.402994e-02	ci left: 3.920040e-01	ci right 4.056254e-01	k: 7976	n:20000
KS ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
ZNF347   20000 perm   4 sec   (4997 perm/sec)   p_kst 5.825000e-02   p_cons 3.988000e-01   p_joint 1.399500e-01

Joint ci ratio: 5.793436e-02	ci left: 1.285509e-01	ci right 1.362538e-01	k: 3971	n:30000
Cons ci ratio: 2.615694e-02	ci left: 4.224914e-01	ci right 4.337225e-01	k: 12843	n:30000
KS ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
ZNF347   30000 perm   6 sec   (4835 perm/sec)   p_kst 5.790000e-02   p_cons 4.281000e-01   p_joint 1.323667e-01

Outputting figure to mutsig2_images.part000000000196/ZNF347.7_2539_30000_0.0579_0.4281_0.13237.png
                gene_name: ZNF347
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 17 percent done.
ZNF354C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
Cons ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
KS ci ratio: 1.767934e-02	ci left: 8.235089e-01	ci right 8.382978e-01	k: 8310	n:10000
ZNF354C   10000 perm   1 sec   (6803 perm/sec)   p_kst 8.310000e-01   p_cons 3.990000e-01   p_joint 7.099000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF354C.7_1681_10000_0.831_0.399_0.7099.png
                gene_name: ZNF354C
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 19 percent done.
ZNF398
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
Cons ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
KS ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
ZNF398   10000 perm   2 sec   (5968 perm/sec)   p_kst 7.326000e-01   p_cons 3.252000e-01   p_joint 6.256000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF398.7_1953_10000_0.7326_0.3252_0.6256.png
                gene_name: ZNF398
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 20 percent done.
ZNF285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
ZNF285   10000 perm   2 sec   (5608 perm/sec)   p_kst 2.827000e-01   p_cons 5.305000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF285.6_1785_10000_0.2827_0.5305_0.3499.png
                gene_name: ZNF285
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 21 percent done.
ZNF274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
Cons ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
KS ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
ZNF274   10000 perm   2 sec   (5975 perm/sec)   p_kst 6.175000e-01   p_cons 3.727000e-01   p_joint 5.452000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF274.5_1989_10000_0.6175_0.3727_0.5452.png
                gene_name: ZNF274
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 23 percent done.
ZNF28
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
ZNF28   10000 perm   2 sec   (6467 perm/sec)   p_kst 3.963000e-01   p_cons 2.545000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF28.4_2002_10000_0.3963_0.2545_0.3663.png
                gene_name: ZNF28
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 24 percent done.
ZNF280A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
KS ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
ZNF280A   10000 perm   2 sec   (6457 perm/sec)   p_kst 8.900000e-01   p_cons 7.981000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF280A.5_1633_10000_0.89_0.7981_1.png
                gene_name: ZNF280A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ZNF280B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
KS ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
ZNF280B   10000 perm   2 sec   (5913 perm/sec)   p_kst 1.681000e-01   p_cons 2.602000e-01   p_joint 2.401000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280B.5_1636_10000_0.1681_0.2602_0.2401.png
                gene_name: ZNF280B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 27 percent done.
ZNF280D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.274162e-02	ci left: 5.792819e-01	ci right 5.986662e-01	k: 5890	n:10000
Cons ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
KS ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
ZNF280D   10000 perm   2 sec   (5812 perm/sec)   p_kst 5.686000e-01   p_cons 3.151000e-01   p_joint 5.890000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280D.5_3116_10000_0.5686_0.3151_0.589.png
                gene_name: ZNF280D
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
ZNF300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
ZNF300   10000 perm   2 sec   (6343 perm/sec)   p_kst 3.840000e-02   p_cons 3.337000e-01   p_joint 4.060000e-02

Joint ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
Cons ci ratio: 3.870978e-02	ci left: 3.323388e-01	ci right 3.455080e-01	k: 6778	n:20000
KS ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
ZNF300   20000 perm   4 sec   (5695 perm/sec)   p_kst 3.505000e-02   p_cons 3.389000e-01   p_joint 5.240000e-02

Joint ci ratio: 8.772748e-02	ci left: 5.965607e-02	ci right 6.516238e-02	k: 1871	n:30000
Cons ci ratio: 3.174915e-02	ci left: 3.315509e-01	ci right 3.422807e-01	k: 10107	n:30000
KS ci ratio: 1.211880e-01	ci left: 3.165422e-02	ci right 3.577006e-02	k: 1010	n:30000
ZNF300   30000 perm   6 sec   (5441 perm/sec)   p_kst 3.366667e-02   p_cons 3.369000e-01   p_joint 6.236667e-02

Joint ci ratio: 8.417825e-02	ci left: 4.925621e-02	ci right 5.360921e-02	k: 2056	n:40000
Cons ci ratio: 2.813911e-02	ci left: 3.220542e-01	ci right 3.312710e-01	k: 13066	n:40000
KS ci ratio: 1.050734e-01	ci left: 3.185552e-02	ci right 3.541260e-02	k: 1344	n:40000
ZNF300   40000 perm   8 sec   (5308 perm/sec)   p_kst 3.360000e-02   p_cons 3.266500e-01   p_joint 5.140000e-02

Joint ci ratio: 6.821066e-02	ci left: 5.984265e-02	ci right 6.408838e-02	k: 3097	n:50000
Cons ci ratio: 2.513153e-02	ci left: 3.231872e-01	ci right 3.314328e-01	k: 16365	n:50000
KS ci ratio: 9.632510e-02	ci left: 3.051360e-02	ci right 3.362103e-02	k: 1602	n:50000
ZNF300   50000 perm   10 sec   (5200 perm/sec)   p_kst 3.204000e-02   p_cons 3.273000e-01   p_joint 6.194000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF300.5_1883_50000_0.03204_0.3273_0.06194.png
                gene_name: ZNF300
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 30 percent done.
ZNF331
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
Cons ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
ZNF331   10000 perm   2 sec   (6241 perm/sec)   p_kst 3.020000e-02   p_cons 6.400000e-01   p_joint 1.013000e-01

Joint ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
Cons ci ratio: 2.153614e-02	ci left: 6.167928e-01	ci right 6.302713e-01	k: 12471	n:20000
KS ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
ZNF331   20000 perm   4 sec   (5710 perm/sec)   p_kst 2.770000e-02   p_cons 6.235500e-01   p_joint 8.515000e-02

Joint ci ratio: 7.745197e-02	ci left: 7.561173e-02	ci right 8.173682e-02	k: 2359	n:30000
Cons ci ratio: 1.706701e-02	ci left: 6.319970e-01	ci right 6.429097e-01	k: 19124	n:30000
KS ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
ZNF331   30000 perm   6 sec   (5379 perm/sec)   p_kst 2.963333e-02   p_cons 6.374667e-01   p_joint 7.863333e-02

Joint ci ratio: 6.928264e-02	ci left: 7.152698e-02	ci right 7.668505e-02	k: 2963	n:40000
Cons ci ratio: 1.483392e-02	ci left: 6.310621e-01	ci right 6.405182e-01	k: 25432	n:40000
KS ci ratio: 1.129622e-01	ci left: 2.757178e-02	ci right 3.089703e-02	k: 1168	n:40000
ZNF331   40000 perm   8 sec   (5229 perm/sec)   p_kst 2.920000e-02   p_cons 6.358000e-01   p_joint 7.407500e-02

Joint ci ratio: 5.734055e-02	ci left: 8.302366e-02	ci right 8.794459e-02	k: 4273	n:50000
Cons ci ratio: 1.360974e-02	ci left: 6.196771e-01	ci right 6.281885e-01	k: 31197	n:50000
KS ci ratio: 1.003054e-01	ci left: 2.815133e-02	ci right 3.114361e-02	k: 1481	n:50000
ZNF331   50000 perm   10 sec   (5104 perm/sec)   p_kst 2.962000e-02   p_cons 6.239400e-01   p_joint 8.546000e-02

Joint ci ratio: 5.203897e-02	ci left: 8.414718e-02	ci right 8.865958e-02	k: 5183	n:60000
Cons ci ratio: 1.240960e-02	ci left: 6.205943e-01	ci right 6.283604e-01	k: 37469	n:60000
KS ci ratio: 9.197724e-02	ci left: 2.803022e-02	ci right 3.074889e-02	k: 1762	n:60000
ZNF331   60000 perm   12 sec   (4998 perm/sec)   p_kst 2.936667e-02   p_cons 6.244833e-01   p_joint 8.638333e-02

Outputting figure to mutsig2_images.part000000000196/ZNF331.5_1404_60000_0.029367_0.62448_0.086383.png
                gene_name: ZNF331
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 31 percent done.
ZNF334
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
KS ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
ZNF334   10000 perm   2 sec   (5875 perm/sec)   p_kst 5.380000e-01   p_cons 1.090000e-02   p_joint 5.890000e-02

Joint ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
Cons ci ratio: 2.373881e-01	ci left: 1.185253e-02	ci right 1.509121e-02	k: 268	n:20000
KS ci ratio: 2.604574e-02	ci left: 5.241048e-01	ci right 5.379862e-01	k: 10621	n:20000
ZNF334   20000 perm   4 sec   (5383 perm/sec)   p_kst 5.310500e-01   p_cons 1.340000e-02   p_joint 4.495000e-02

Joint ci ratio: 1.037771e-01	ci left: 4.303921e-02	ci right 4.778266e-02	k: 1361	n:30000
Cons ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
KS ci ratio: 2.118222e-02	ci left: 5.273681e-01	ci right 5.386921e-01	k: 15991	n:30000
ZNF334   30000 perm   6 sec   (5130 perm/sec)   p_kst 5.330333e-01   p_cons 1.380000e-02   p_joint 4.536667e-02

Joint ci ratio: 8.971882e-02	ci left: 4.350276e-02	ci right 4.761354e-02	k: 1821	n:40000
Cons ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
KS ci ratio: 1.807118e-02	ci left: 5.356009e-01	ci right 5.453932e-01	k: 21620	n:40000
ZNF334   40000 perm   8 sec   (4974 perm/sec)   p_kst 5.405000e-01   p_cons 1.315000e-02   p_joint 4.552500e-02

Joint ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
Cons ci ratio: 1.498575e-01	ci left: 1.248753e-02	ci right 1.452953e-02	k: 674	n:50000
KS ci ratio: 1.613745e-02	ci left: 5.369201e-01	ci right 5.456751e-01	k: 27065	n:50000
ZNF334   50000 perm   10 sec   (4841 perm/sec)   p_kst 5.413000e-01   p_cons 1.348000e-02   p_joint 3.206000e-02

Joint ci ratio: 7.229067e-02	ci left: 4.502534e-02	ci right 4.841868e-02	k: 2802	n:60000
Cons ci ratio: 1.362054e-01	ci left: 1.268849e-02	ci right 1.455899e-02	k: 816	n:60000
KS ci ratio: 1.473642e-02	ci left: 5.371359e-01	ci right 5.451268e-01	k: 32468	n:60000
ZNF334   60000 perm   13 sec   (4741 perm/sec)   p_kst 5.411333e-01   p_cons 1.360000e-02   p_joint 4.670000e-02

Joint ci ratio: 7.061045e-02	ci left: 4.068039e-02	ci right 4.367199e-02	k: 2951	n:70000
Cons ci ratio: 1.272688e-01	ci left: 1.251979e-02	ci right 1.423518e-02	k: 935	n:70000
KS ci ratio: 1.361639e-02	ci left: 5.384146e-01	ci right 5.458104e-01	k: 37948	n:70000
ZNF334   70000 perm   15 sec   (4656 perm/sec)   p_kst 5.421143e-01   p_cons 1.335714e-02   p_joint 4.215714e-02

Joint ci ratio: 7.419869e-02	ci left: 3.246021e-02	ci right 3.497375e-02	k: 2696	n:80000
Cons ci ratio: 1.197153e-01	ci left: 1.243270e-02	ci right 1.402789e-02	k: 1057	n:80000
KS ci ratio: 1.272133e-02	ci left: 5.392652e-01	ci right 5.461817e-01	k: 43418	n:80000
ZNF334   80000 perm   17 sec   (4575 perm/sec)   p_kst 5.427250e-01   p_cons 1.321250e-02   p_joint 3.370000e-02

Joint ci ratio: 7.105473e-02	ci left: 3.154759e-02	ci right 3.388265e-02	k: 2943	n:90000
Cons ci ratio: 1.171979e-01	ci left: 1.155773e-02	ci right 1.300729e-02	k: 1104	n:90000
KS ci ratio: 1.200247e-02	ci left: 5.391049e-01	ci right 5.456257e-01	k: 48813	n:90000
ZNF334   90000 perm   20 sec   (4496 perm/sec)   p_kst 5.423667e-01   p_cons 1.226667e-02   p_joint 3.270000e-02

Joint ci ratio: 6.907546e-02	ci left: 3.012122e-02	ci right 3.228608e-02	k: 3119	n:100000
Cons ci ratio: 1.112654e-01	ci left: 1.157740e-02	ci right 1.295110e-02	k: 1225	n:100000
KS ci ratio: 1.138534e-02	ci left: 5.393260e-01	ci right 5.455115e-01	k: 54242	n:100000
ZNF334   100000 perm   23 sec   (4397 perm/sec)   p_kst 5.424200e-01   p_cons 1.225000e-02   p_joint 3.119000e-02

Joint ci ratio: 6.181169e-02	ci left: 3.418137e-02	ci right 3.637049e-02	k: 3879	n:110000
Cons ci ratio: 1.063111e-01	ci left: 1.155961e-02	ci right 1.286630e-02	k: 1342	n:110000
KS ci ratio: 1.085614e-02	ci left: 5.394412e-01	ci right 5.453384e-01	k: 59663	n:110000
ZNF334   110000 perm   25 sec   (4337 perm/sec)   p_kst 5.423909e-01   p_cons 1.220000e-02   p_joint 3.526364e-02

Joint ci ratio: 6.295297e-02	ci left: 3.031377e-02	ci right 3.229230e-02	k: 3755	n:120000
Cons ci ratio: 1.011956e-01	ci left: 1.172464e-02	ci right 1.298242e-02	k: 1481	n:120000
KS ci ratio: 1.040129e-02	ci left: 5.392176e-01	ci right 5.448637e-01	k: 65045	n:120000
ZNF334   120000 perm   28 sec   (4283 perm/sec)   p_kst 5.420417e-01   p_cons 1.234167e-02   p_joint 3.129167e-02

Joint ci ratio: 5.951623e-02	ci left: 3.133038e-02	ci right 3.325979e-02	k: 4197	n:130000
Cons ci ratio: 1.014175e-01	ci left: 1.078499e-02	ci right 1.194465e-02	k: 1476	n:130000
KS ci ratio: 9.983560e-03	ci left: 5.398102e-01	ci right 5.452341e-01	k: 70528	n:130000
ZNF334   130000 perm   31 sec   (4231 perm/sec)   p_kst 5.425231e-01   p_cons 1.135385e-02   p_joint 3.228462e-02

Joint ci ratio: 6.209458e-02	ci left: 2.681843e-02	ci right 2.854407e-02	k: 3874	n:140000
Cons ci ratio: 9.716200e-02	ci left: 1.093412e-02	ci right 1.205767e-02	k: 1608	n:140000
KS ci ratio: 9.618639e-03	ci left: 5.400003e-01	ci right 5.452265e-01	k: 75966	n:140000
ZNF334   140000 perm   34 sec   (4179 perm/sec)   p_kst 5.426143e-01   p_cons 1.148571e-02   p_joint 2.767143e-02

Outputting figure to mutsig2_images.part000000000196/ZNF334.5_2059_140000_0.54261_0.011486_0.027671.png
                gene_name: ZNF334
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 33 percent done.
ZNF263
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
Cons ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
KS ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
ZNF263   10000 perm   2 sec   (6313 perm/sec)   p_kst 6.151000e-01   p_cons 5.479000e-01   p_joint 6.107000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF263.4_2076_10000_0.6151_0.5479_0.6107.png
                gene_name: ZNF263
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 34 percent done.
ZNF267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
ZNF267   10000 perm   2 sec   (5922 perm/sec)   p_kst 3.899000e-01   p_cons 4.846000e-01   p_joint 5.967000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF267.4_2248_10000_0.3899_0.4846_0.5967.png
                gene_name: ZNF267
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 36 percent done.
ZNF283
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
Cons ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
ZNF283   10000 perm   2 sec   (6394 perm/sec)   p_kst 1.460000e-01   p_cons 4.182000e-01   p_joint 4.326000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF283.4_2056_10000_0.146_0.4182_0.4326.png
                gene_name: ZNF283
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 37 percent done.
ZNF287
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
Cons ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
KS ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
ZNF287   10000 perm   2 sec   (6500 perm/sec)   p_kst 6.520000e-02   p_cons 7.164000e-01   p_joint 1.659000e-01

Joint ci ratio: 5.049544e-02	ci left: 2.256687e-01	ci right 2.374094e-01	k: 4630	n:20000
Cons ci ratio: 1.798588e-02	ci left: 6.973173e-01	ci right 7.100234e-01	k: 14074	n:20000
KS ci ratio: 1.056048e-01	ci left: 6.103661e-02	ci right 6.789068e-02	k: 1288	n:20000
ZNF287   20000 perm   4 sec   (5679 perm/sec)   p_kst 6.440000e-02   p_cons 7.037000e-01   p_joint 2.315000e-01

Joint ci ratio: 4.726212e-02	ci left: 1.821062e-01	ci right 1.909546e-01	k: 5595	n:30000
Cons ci ratio: 1.464799e-02	ci left: 6.995686e-01	ci right 7.099250e-01	k: 21143	n:30000
KS ci ratio: 8.745376e-02	ci left: 6.001521e-02	ci right 6.553650e-02	k: 1882	n:30000
ZNF287   30000 perm   5 sec   (5477 perm/sec)   p_kst 6.273333e-02   p_cons 7.047667e-01   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF287.4_2306_30000_0.062733_0.70477_0.1865.png
                gene_name: ZNF287
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
ZNF295
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
Cons ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
KS ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
ZNF295   10000 perm   2 sec   (5780 perm/sec)   p_kst 1.583000e-01   p_cons 5.980000e-02   p_joint 4.020000e-02

Joint ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
Cons ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
KS ci ratio: 6.397498e-02	ci left: 1.529700e-01	ci right 1.631296e-01	k: 3160	n:20000
ZNF295   20000 perm   4 sec   (5186 perm/sec)   p_kst 1.580000e-01   p_cons 6.060000e-02   p_joint 5.905000e-02

Joint ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
Cons ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
KS ci ratio: 5.263502e-02	ci left: 1.519108e-01	ci right 1.601560e-01	k: 4680	n:30000
ZNF295   30000 perm   6 sec   (4939 perm/sec)   p_kst 1.560000e-01   p_cons 6.663333e-02   p_joint 6.436667e-02

Outputting figure to mutsig2_images.part000000000196/ZNF295.4_3205_30000_0.156_0.066633_0.064367.png
                gene_name: ZNF295
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 40 percent done.
ZNF323
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
ZNF323   10000 perm   2 sec   (6282 perm/sec)   p_kst 3.727000e-01   p_cons 8.848000e-01   p_joint 6.085000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF323.4_1233_10000_0.3727_0.8848_0.6085.png
                gene_name: ZNF323
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 41 percent done.
ZNF326
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 9.842379e-02	ci left: 1.301213e-01	ci right 1.436909e-01	k: 1368	n:10000
KS ci ratio: 4.728838e-02	ci left: 3.975486e-01	ci right 4.169054e-01	k: 4072	n:10000
ZNF326   10000 perm   2 sec   (5666 perm/sec)   p_kst 4.072000e-01   p_cons 1.368000e-01   p_joint 2.857000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF326.4_1801_10000_0.4072_0.1368_0.2857.png
                gene_name: ZNF326
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 43 percent done.
ZNF335
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
KS ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
ZNF335   10000 perm   2 sec   (5687 perm/sec)   p_kst 5.864000e-01   p_cons 9.500000e-03   p_joint 4.200000e-02

Joint ci ratio: 1.156184e-01	ci left: 5.119939e-02	ci right 5.753095e-02	k: 1086	n:20000
Cons ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
KS ci ratio: 2.350391e-02	ci left: 5.748271e-01	ci right 5.885491e-01	k: 11634	n:20000
ZNF335   20000 perm   4 sec   (5131 perm/sec)   p_kst 5.817000e-01   p_cons 1.005000e-02   p_joint 5.430000e-02

Joint ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 1.921096e-02	ci left: 5.755929e-01	ci right 5.867914e-01	k: 17436	n:30000
ZNF335   30000 perm   6 sec   (4955 perm/sec)   p_kst 5.812000e-01   p_cons 8.533333e-03   p_joint 4.266667e-02

Joint ci ratio: 1.176031e-01	ci left: 2.543352e-02	ci right 2.863564e-02	k: 1080	n:40000
Cons ci ratio: 2.068304e-01	ci left: 7.979184e-03	ci right 9.843160e-03	k: 355	n:40000
KS ci ratio: 1.665358e-02	ci left: 5.758712e-01	ci right 5.855671e-01	k: 23229	n:40000
ZNF335   40000 perm   8 sec   (4724 perm/sec)   p_kst 5.807250e-01   p_cons 8.875000e-03   p_joint 2.700000e-02

Joint ci ratio: 8.716111e-02	ci left: 3.718284e-02	ci right 4.059096e-02	k: 1943	n:50000
Cons ci ratio: 1.864808e-01	ci left: 7.942767e-03	ci right 9.595025e-03	k: 437	n:50000
KS ci ratio: 1.495691e-02	ci left: 5.743776e-01	ci right 5.830533e-01	k: 28936	n:50000
ZNF335   50000 perm   11 sec   (4591 perm/sec)   p_kst 5.787200e-01   p_cons 8.740000e-03   p_joint 3.886000e-02

Joint ci ratio: 8.063018e-02	ci left: 3.636978e-02	ci right 3.944179e-02	k: 2273	n:60000
Cons ci ratio: 1.718233e-01	ci left: 7.860724e-03	ci right 9.354058e-03	k: 515	n:60000
KS ci ratio: 1.361984e-02	ci left: 5.759719e-01	ci right 5.838870e-01	k: 34796	n:60000
ZNF335   60000 perm   13 sec   (4497 perm/sec)   p_kst 5.799333e-01   p_cons 8.583333e-03   p_joint 3.788333e-02

Joint ci ratio: 7.058549e-02	ci left: 4.070848e-02	ci right 4.370105e-02	k: 2953	n:70000
Cons ci ratio: 1.584154e-01	ci left: 7.984152e-03	ci right 9.371322e-03	k: 606	n:70000
KS ci ratio: 1.258714e-02	ci left: 5.771343e-01	ci right 5.844590e-01	k: 40656	n:70000
ZNF335   70000 perm   16 sec   (4416 perm/sec)   p_kst 5.808000e-01   p_cons 8.657143e-03   p_joint 4.218571e-02

Joint ci ratio: 6.575269e-02	ci left: 4.113710e-02	ci right 4.394620e-02	k: 3402	n:80000
Cons ci ratio: 1.463558e-01	ci left: 8.236702e-03	ci right 9.549285e-03	k: 710	n:80000
KS ci ratio: 1.178631e-02	ci left: 5.768711e-01	ci right 5.837231e-01	k: 46424	n:80000
ZNF335   80000 perm   18 sec   (4360 perm/sec)   p_kst 5.803000e-01   p_cons 8.875000e-03   p_joint 4.252500e-02

Joint ci ratio: 5.850527e-02	ci left: 4.611939e-02	ci right 4.890986e-02	k: 4275	n:90000
Cons ci ratio: 1.299381e-01	ci left: 9.360229e-03	ci right 1.067164e-02	k: 900	n:90000
KS ci ratio: 1.112037e-02	ci left: 5.767118e-01	ci right 5.831720e-01	k: 52195	n:90000
ZNF335   90000 perm   21 sec   (4290 perm/sec)   p_kst 5.799444e-01   p_cons 1.000000e-02   p_joint 4.750000e-02

Joint ci ratio: 6.342780e-02	ci left: 3.562187e-02	ci right 3.796510e-02	k: 3678	n:100000
Cons ci ratio: 1.236519e-01	ci left: 9.334392e-03	ci right 1.057428e-02	k: 994	n:100000
KS ci ratio: 1.054181e-02	ci left: 5.772440e-01	ci right 5.833714e-01	k: 58031	n:100000
ZNF335   100000 perm   24 sec   (4224 perm/sec)   p_kst 5.803100e-01   p_cons 9.940000e-03   p_joint 3.678000e-02

Joint ci ratio: 6.391628e-02	ci left: 3.200583e-02	ci right 3.412797e-02	k: 3636	n:110000
Cons ci ratio: 1.170099e-01	ci left: 9.508679e-03	ci right 1.069918e-02	k: 1110	n:110000
KS ci ratio: 1.015422e-02	ci left: 5.724088e-01	ci right 5.782599e-01	k: 63287	n:110000
ZNF335   110000 perm   26 sec   (4160 perm/sec)   p_kst 5.753364e-01   p_cons 1.009091e-02   p_joint 3.305455e-02

Joint ci ratio: 6.252464e-02	ci left: 3.072410e-02	ci right 3.271528e-02	k: 3805	n:120000
Cons ci ratio: 1.130698e-01	ci left: 9.355638e-03	ci right 1.048490e-02	k: 1189	n:120000
KS ci ratio: 9.716526e-03	ci left: 5.728059e-01	ci right 5.784071e-01	k: 69073	n:120000
ZNF335   120000 perm   29 sec   (4103 perm/sec)   p_kst 5.756083e-01   p_cons 9.908333e-03   p_joint 3.170833e-02

Joint ci ratio: 5.948695e-02	ci left: 3.136071e-02	ci right 3.329100e-02	k: 4201	n:130000
Cons ci ratio: 1.091554e-01	ci left: 9.286589e-03	ci right 1.036621e-02	k: 1276	n:130000
KS ci ratio: 9.341383e-03	ci left: 5.725998e-01	ci right 5.779814e-01	k: 74788	n:130000
ZNF335   130000 perm   32 sec   (4033 perm/sec)   p_kst 5.752923e-01   p_cons 9.815385e-03   p_joint 3.231538e-02

Joint ci ratio: 5.423030e-02	ci left: 3.500202e-02	ci right 3.696012e-02	k: 5036	n:140000
Cons ci ratio: 1.056995e-01	ci left: 9.214073e-03	ci right 1.024924e-02	k: 1361	n:140000
KS ci ratio: 8.996447e-03	ci left: 5.729773e-01	ci right 5.781624e-01	k: 80580	n:140000
ZNF335   140000 perm   35 sec   (3967 perm/sec)   p_kst 5.755714e-01   p_cons 9.721429e-03   p_joint 3.597143e-02

Joint ci ratio: 5.305160e-02	ci left: 3.418751e-02	ci right 3.605718e-02	k: 5267	n:150000
Cons ci ratio: 1.024095e-01	ci left: 9.177685e-03	ci right 1.017474e-02	k: 1450	n:150000
KS ci ratio: 8.695635e-03	ci left: 5.728271e-01	ci right 5.778366e-01	k: 86300	n:150000
ZNF335   150000 perm   38 sec   (3901 perm/sec)   p_kst 5.753333e-01   p_cons 9.666667e-03   p_joint 3.511333e-02

Joint ci ratio: 5.137743e-02	ci left: 3.420356e-02	ci right 3.601333e-02	k: 5616	n:160000
Cons ci ratio: 9.892335e-02	ci left: 9.237730e-03	ci right 1.020516e-02	k: 1554	n:160000
KS ci ratio: 8.418476e-03	ci left: 5.729673e-01	ci right 5.778174e-01	k: 92063	n:160000
ZNF335   160000 perm   42 sec   (3848 perm/sec)   p_kst 5.753938e-01   p_cons 9.712500e-03   p_joint 3.510000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF335.4_4137_160000_0.57539_0.0097125_0.0351.png
                gene_name: ZNF335
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 44 percent done.
ZNF33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
Cons ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
KS ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
ZNF33B   10000 perm   2 sec   (6220 perm/sec)   p_kst 1.296000e-01   p_cons 8.062000e-01   p_joint 2.574000e-01

Joint ci ratio: 5.070205e-02	ci left: 2.242318e-01	ci right 2.359468e-01	k: 4601	n:20000
Cons ci ratio: 1.360140e-02	ci left: 8.003999e-01	ci right 8.114110e-01	k: 16119	n:20000
KS ci ratio: 7.336872e-02	ci left: 1.202987e-01	ci right 1.295107e-01	k: 2497	n:20000
ZNF33B   20000 perm   4 sec   (5611 perm/sec)   p_kst 1.248500e-01   p_cons 8.059500e-01   p_joint 2.300500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF33B.4_2353_20000_0.12485_0.80595_0.23005.png
                gene_name: ZNF33B
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 46 percent done.
ZNF346
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
Cons ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
KS ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
ZNF346   10000 perm   1 sec   (6676 perm/sec)   p_kst 3.472000e-01   p_cons 1.310000e-02   p_joint 4.710000e-02

Joint ci ratio: 1.282129e-01	ci left: 4.178055e-02	ci right 4.755277e-02	k: 892	n:20000
Cons ci ratio: 2.401172e-01	ci left: 1.157027e-02	ci right 1.477358e-02	k: 262	n:20000
KS ci ratio: 3.676653e-02	ci left: 3.556837e-01	ci right 3.690564e-01	k: 7247	n:20000
ZNF346   20000 perm   3 sec   (5952 perm/sec)   p_kst 3.623500e-01   p_cons 1.310000e-02   p_joint 4.460000e-02

Joint ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 3.006957e-02	ci left: 3.561601e-01	ci right 3.670667e-01	k: 10848	n:30000
ZNF346   30000 perm   5 sec   (5646 perm/sec)   p_kst 3.616000e-01   p_cons 1.256667e-02   p_joint 6.740000e-02

Joint ci ratio: 8.258217e-02	ci left: 5.111865e-02	ci right 5.554648e-02	k: 2132	n:40000
Cons ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
KS ci ratio: 2.624290e-02	ci left: 3.533496e-01	ci right 3.627710e-01	k: 14322	n:40000
ZNF346   40000 perm   7 sec   (5479 perm/sec)   p_kst 3.580500e-01   p_cons 1.252500e-02   p_joint 5.330000e-02

Joint ci ratio: 7.713133e-02	ci left: 4.722226e-02	ci right 5.103031e-02	k: 2455	n:50000
Cons ci ratio: 1.565783e-01	ci left: 1.140995e-02	ci right 1.336727e-02	k: 618	n:50000
KS ci ratio: 2.360647e-02	ci left: 3.512430e-01	ci right 3.596537e-01	k: 17772	n:50000
ZNF346   50000 perm   9 sec   (5338 perm/sec)   p_kst 3.554400e-01   p_cons 1.236000e-02   p_joint 4.910000e-02

Joint ci ratio: 6.842231e-02	ci left: 5.008925e-02	ci right 5.365426e-02	k: 3111	n:60000
Cons ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
KS ci ratio: 2.208160e-02	ci left: 3.405473e-01	ci right 3.481678e-01	k: 20661	n:60000
ZNF346   60000 perm   12 sec   (5215 perm/sec)   p_kst 3.443500e-01   p_cons 1.243333e-02   p_joint 5.185000e-02

Joint ci ratio: 6.403493e-02	ci left: 4.918479e-02	ci right 5.245257e-02	k: 3556	n:70000
Cons ci ratio: 1.323796e-01	ci left: 1.155188e-02	ci right 1.320320e-02	k: 865	n:70000
KS ci ratio: 2.045308e-02	ci left: 3.406228e-01	ci right 3.476758e-01	k: 24090	n:70000
ZNF346   70000 perm   14 sec   (5014 perm/sec)   p_kst 3.441429e-01   p_cons 1.235714e-02   p_joint 5.080000e-02

Joint ci ratio: 6.031574e-02	ci left: 4.863537e-02	ci right 5.167236e-02	k: 4011	n:80000
Cons ci ratio: 1.234336e-01	ci left: 1.168099e-02	ci right 1.322967e-02	k: 995	n:80000
KS ci ratio: 1.913505e-02	ci left: 3.407825e-01	ci right 3.473788e-01	k: 27526	n:80000
ZNF346   80000 perm   16 sec   (4907 perm/sec)   p_kst 3.440750e-01   p_cons 1.243750e-02   p_joint 5.013750e-02

Joint ci ratio: 5.981675e-02	ci left: 4.418046e-02	ci right 4.691559e-02	k: 4098	n:90000
Cons ci ratio: 1.159299e-01	ci left: 1.181671e-02	ci right 1.328162e-02	k: 1128	n:90000
KS ci ratio: 1.804909e-02	ci left: 3.407629e-01	ci right 3.469805e-01	k: 30948	n:90000
ZNF346   90000 perm   19 sec   (4807 perm/sec)   p_kst 3.438667e-01   p_cons 1.253333e-02   p_joint 4.553333e-02

Joint ci ratio: 5.702614e-02	ci left: 4.383185e-02	ci right 4.641461e-02	k: 4511	n:100000
Cons ci ratio: 1.099562e-01	ci left: 1.185947e-02	ci right 1.324902e-02	k: 1254	n:100000
KS ci ratio: 1.713607e-02	ci left: 3.405763e-01	ci right 3.464728e-01	k: 34352	n:100000
ZNF346   100000 perm   21 sec   (4736 perm/sec)   p_kst 3.435200e-01   p_cons 1.254000e-02   p_joint 4.511000e-02

Joint ci ratio: 5.450586e-02	ci left: 4.368370e-02	ci right 4.614037e-02	k: 4939	n:110000
Cons ci ratio: 1.045519e-01	ci left: 1.195804e-02	ci right 1.328603e-02	k: 1387	n:110000
KS ci ratio: 1.632422e-02	ci left: 3.411107e-01	ci right 3.467339e-01	k: 37831	n:110000
ZNF346   110000 perm   24 sec   (4661 perm/sec)   p_kst 3.439182e-01   p_cons 1.260909e-02   p_joint 4.490000e-02

Joint ci ratio: 5.375573e-02	ci left: 4.129151e-02	ci right 4.358067e-02	k: 5091	n:120000
Cons ci ratio: 1.002748e-01	ci left: 1.194404e-02	ci right 1.321301e-02	k: 1508	n:120000
KS ci ratio: 1.562962e-02	ci left: 3.412204e-01	ci right 3.466038e-01	k: 41269	n:120000
ZNF346   120000 perm   26 sec   (4593 perm/sec)   p_kst 3.439083e-01   p_cons 1.256667e-02   p_joint 4.242500e-02

Joint ci ratio: 5.112321e-02	ci left: 4.216197e-02	ci right 4.438154e-02	k: 5624	n:130000
Cons ci ratio: 9.690530e-02	ci left: 1.182801e-02	ci right 1.304003e-02	k: 1615	n:130000
KS ci ratio: 1.502059e-02	ci left: 3.412024e-01	ci right 3.463738e-01	k: 44692	n:130000
ZNF346   130000 perm   29 sec   (4517 perm/sec)   p_kst 3.437846e-01   p_cons 1.242308e-02   p_joint 4.326154e-02

Outputting figure to mutsig2_images.part000000000196/ZNF346.4_913_130000_0.34378_0.012423_0.043262.png
                gene_name: ZNF346
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 47 percent done.
ZNF366
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
Cons ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
KS ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
ZNF366   10000 perm   2 sec   (6090 perm/sec)   p_kst 2.735000e-01   p_cons 8.908000e-01   p_joint 4.487000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF366.4_2251_10000_0.2735_0.8908_0.4487.png
                gene_name: ZNF366
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 49 percent done.
ZNF382
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
Cons ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
ZNF382   10000 perm   2 sec   (6113 perm/sec)   p_kst 1.394000e-01   p_cons 5.797000e-01   p_joint 3.037000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF382.4_1665_10000_0.1394_0.5797_0.3037.png
                gene_name: ZNF382
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 50 percent done.
ZNF264
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
Cons ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
KS ci ratio: 3.937479e-02	ci left: 4.878522e-01	ci right 5.075492e-01	k: 4977	n:10000
ZNF264   10000 perm   2 sec   (6415 perm/sec)   p_kst 4.977000e-01   p_cons 5.408000e-01   p_joint 8.618000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF264.3_1900_10000_0.4977_0.5408_0.8618.png
                gene_name: ZNF264
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 51 percent done.
ZNF276
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
KS ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
ZNF276   10000 perm   2 sec   (6528 perm/sec)   p_kst 8.102000e-01   p_cons 9.850000e-02   p_joint 3.138000e-01

Joint ci ratio: 3.320330e-02	ci left: 4.038204e-01	ci right 4.175056e-01	k: 8213	n:20000
Cons ci ratio: 8.338596e-02	ci left: 9.533591e-02	ci right 1.036809e-01	k: 1989	n:20000
KS ci ratio: 1.325255e-02	ci left: 8.084863e-01	ci right 8.193223e-01	k: 16279	n:20000
ZNF276   20000 perm   3 sec   (5763 perm/sec)   p_kst 8.139500e-01   p_cons 9.945000e-02   p_joint 4.106500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF276.3_1889_20000_0.81395_0.09945_0.41065.png
                gene_name: ZNF276
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 53 percent done.
ZNF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
Cons ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
ZNF3   10000 perm   2 sec   (6637 perm/sec)   p_kst 3.010000e-02   p_cons 3.363000e-01   p_joint 9.230000e-02

Joint ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
Cons ci ratio: 3.773681e-02	ci left: 3.437851e-01	ci right 3.570585e-01	k: 7008	n:20000
KS ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
ZNF3   20000 perm   3 sec   (5984 perm/sec)   p_kst 3.030000e-02   p_cons 3.504000e-01   p_joint 3.480000e-02

Joint ci ratio: 9.271595e-02	ci left: 5.362028e-02	ci right 5.886607e-02	k: 1686	n:30000
Cons ci ratio: 3.108344e-02	ci left: 3.410473e-01	ci right 3.518491e-01	k: 10393	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
ZNF3   30000 perm   5 sec   (5732 perm/sec)   p_kst 3.040000e-02   p_cons 3.464333e-01   p_joint 5.620000e-02

Joint ci ratio: 7.422942e-02	ci left: 6.275063e-02	ci right 6.761273e-02	k: 2606	n:40000
Cons ci ratio: 2.697212e-02	ci left: 3.408886e-01	ci right 3.502339e-01	k: 13822	n:40000
KS ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
ZNF3   40000 perm   7 sec   (5562 perm/sec)   p_kst 3.032500e-02   p_cons 3.455500e-01   p_joint 6.515000e-02

Joint ci ratio: 7.340337e-02	ci left: 5.197588e-02	ci right 5.595610e-02	k: 2697	n:50000
Cons ci ratio: 2.412753e-02	ci left: 3.413309e-01	ci right 3.496870e-01	k: 17275	n:50000
KS ci ratio: 9.934239e-02	ci left: 2.869775e-02	ci right 3.171712e-02	k: 1509	n:50000
ZNF3   50000 perm   9 sec   (5433 perm/sec)   p_kst 3.018000e-02   p_cons 3.455000e-01   p_joint 5.394000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF3.3_1486_50000_0.03018_0.3455_0.05394.png
                gene_name: ZNF3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 54 percent done.
ZNF324B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
Cons ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
KS ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
ZNF324B   10000 perm   1 sec   (6847 perm/sec)   p_kst 2.066000e-01   p_cons 4.438000e-01   p_joint 3.472000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF324B.3_1647_10000_0.2066_0.4438_0.3472.png
                gene_name: ZNF324B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 56 percent done.
ZNF330
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
ZNF330   10000 perm   1 sec   (6687 perm/sec)   p_kst 4.282000e-01   p_cons 5.840000e-01   p_joint 7.510000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF330.3_999_10000_0.4282_0.584_0.751.png
                gene_name: ZNF330
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 57 percent done.
ZNF337
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
ZNF337   10000 perm   2 sec   (6272 perm/sec)   p_kst 4.916000e-01   p_cons 6.439000e-01   p_joint 7.578000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF337.3_2272_10000_0.4916_0.6439_0.7578.png
                gene_name: ZNF337
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 59 percent done.
ZNF350
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
Cons ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
KS ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
ZNF350   10000 perm   1 sec   (7071 perm/sec)   p_kst 4.248000e-01   p_cons 4.737000e-01   p_joint 5.364000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF350.3_1615_10000_0.4248_0.4737_0.5364.png
                gene_name: ZNF350
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 60 percent done.
ZNF37A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
KS ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
ZNF37A   10000 perm   1 sec   (6731 perm/sec)   p_kst 5.444000e-01   p_cons 6.951000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF37A.3_1702_10000_0.5444_0.6951_1.png
                gene_name: ZNF37A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZNF384
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
Cons ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
KS ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
ZNF384   10000 perm   2 sec   (6358 perm/sec)   p_kst 5.723000e-01   p_cons 5.427000e-01   p_joint 9.580000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF384.3_1770_10000_0.5723_0.5427_0.958.png
                gene_name: ZNF384
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 63 percent done.
ZNF404
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
Cons ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
KS ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
ZNF404   10000 perm   2 sec   (6489 perm/sec)   p_kst 9.197000e-01   p_cons 2.049000e-01   p_joint 4.112000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF404.3_1658_10000_0.9197_0.2049_0.4112.png
                gene_name: ZNF404
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 64 percent done.
ZNF41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 1.944141e-02	ci left: 7.946610e-01	ci right 8.103624e-01	k: 8026	n:10000
ZNF41   10000 perm   2 sec   (6389 perm/sec)   p_kst 8.026000e-01   p_cons 5.200000e-01   p_joint 9.094000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF41.3_2356_10000_0.8026_0.52_0.9094.png
                gene_name: ZNF41
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 66 percent done.
ZNF259
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
Cons ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
ZNF259   10000 perm   1 sec   (7035 perm/sec)   p_kst 1.911000e-01   p_cons 1.572000e-01   p_joint 4.496000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF259.2_1436_10000_0.1911_0.1572_0.4496.png
                gene_name: ZNF259
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 67 percent done.
ZNF266
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
Cons ci ratio: 3.231743e-02	ci left: 5.856032e-01	ci right 6.049412e-01	k: 5953	n:10000
KS ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
ZNF266   10000 perm   1 sec   (7036 perm/sec)   p_kst 8.445000e-01   p_cons 5.953000e-01   p_joint 9.303000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF266.2_1666_10000_0.8445_0.5953_0.9303.png
                gene_name: ZNF266
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 69 percent done.
ZNF273
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
ZNF273   10000 perm   1 sec   (6881 perm/sec)   p_kst 5.267000e-01   p_cons 7.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF273.2_1726_10000_0.5267_0.7115_1.png
                gene_name: ZNF273
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ZNF275
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
KS ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
ZNF275   10000 perm   1 sec   (7752 perm/sec)   p_kst 6.270000e-02   p_cons 2.573000e-01   p_joint 7.780000e-02

Joint ci ratio: 6.620319e-02	ci left: 1.441899e-01	ci right 1.541124e-01	k: 2982	n:20000
Cons ci ratio: 4.705587e-02	ci left: 2.515002e-01	ci right 2.636703e-01	k: 5151	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
ZNF275   20000 perm   3 sec   (6845 perm/sec)   p_kst 6.120000e-02   p_cons 2.575500e-01   p_joint 1.491000e-01

Joint ci ratio: 5.003121e-02	ci left: 1.655998e-01	ci right 1.741309e-01	k: 5095	n:30000
Cons ci ratio: 3.834419e-02	ci left: 2.533871e-01	ci right 2.633264e-01	k: 7750	n:30000
KS ci ratio: 8.838394e-02	ci left: 5.880731e-02	ci right 6.427798e-02	k: 1845	n:30000
ZNF275   30000 perm   5 sec   (6502 perm/sec)   p_kst 6.150000e-02   p_cons 2.583333e-01   p_joint 1.698333e-01

Outputting figure to mutsig2_images.part000000000196/ZNF275.2_1006_30000_0.0615_0.25833_0.16983.png
                gene_name: ZNF275
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
ZNF280C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
KS ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
ZNF280C   10000 perm   2 sec   (6078 perm/sec)   p_kst 9.674000e-01   p_cons 6.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF280C.2_2286_10000_0.9674_0.6543_1.png
                gene_name: ZNF280C
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ZNF281
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
KS ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
ZNF281   10000 perm   2 sec   (6150 perm/sec)   p_kst 8.088000e-01   p_cons 5.114000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF281.2_2692_10000_0.8088_0.5114_0.7923.png
                gene_name: ZNF281
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 74 percent done.
ZNF282
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
ZNF282   10000 perm   1 sec   (6844 perm/sec)   p_kst 7.738000e-01   p_cons 3.529000e-01   p_joint 6.045000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF282.2_2048_10000_0.7738_0.3529_0.6045.png
                gene_name: ZNF282
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 76 percent done.
ZNF284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
ZNF284   10000 perm   1 sec   (6747 perm/sec)   p_kst 5.236000e-01   p_cons 4.112000e-01   p_joint 5.551000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF284.2_1798_10000_0.5236_0.4112_0.5551.png
                gene_name: ZNF284
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 77 percent done.
ZNF286A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
ZNF286A   10000 perm   1 sec   (7246 perm/sec)   p_kst 3.000000e-02   p_cons 4.140000e-02   p_joint 3.300000e-02

Joint ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
ZNF286A   20000 perm   3 sec   (6133 perm/sec)   p_kst 2.975000e-02   p_cons 4.160000e-02   p_joint 5.330000e-02

Joint ci ratio: 1.836037e-01	ci left: 1.359134e-02	ci right 1.637042e-02	k: 448	n:30000
Cons ci ratio: 1.092239e-01	ci left: 3.891389e-02	ci right 4.344218e-02	k: 1234	n:30000
KS ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
ZNF286A   30000 perm   5 sec   (5752 perm/sec)   p_kst 3.020000e-02   p_cons 4.113333e-02   p_joint 1.493333e-02

Joint ci ratio: 1.613008e-01	ci left: 1.337538e-02	ci right 1.574586e-02	k: 581	n:40000
Cons ci ratio: 9.905703e-02	ci left: 3.580575e-02	ci right 3.956175e-02	k: 1506	n:40000
KS ci ratio: 1.115929e-01	ci left: 2.825267e-02	ci right 3.161603e-02	k: 1196	n:40000
ZNF286A   40000 perm   7 sec   (5551 perm/sec)   p_kst 2.990000e-02   p_cons 3.765000e-02   p_joint 1.452500e-02

Joint ci ratio: 1.452375e-01	ci left: 1.331619e-02	ci right 1.542075e-02	k: 717	n:50000
Cons ci ratio: 8.866678e-02	ci left: 3.594951e-02	ci right 3.930445e-02	k: 1880	n:50000
KS ci ratio: 9.951241e-02	ci left: 2.860017e-02	ci right 3.161472e-02	k: 1504	n:50000
ZNF286A   50000 perm   9 sec   (5270 perm/sec)   p_kst 3.008000e-02   p_cons 3.760000e-02   p_joint 1.434000e-02

Joint ci ratio: 1.327084e-01	ci left: 1.338136e-02	ci right 1.529937e-02	k: 859	n:60000
Cons ci ratio: 8.070398e-02	ci left: 3.630441e-02	ci right 3.937383e-02	k: 2269	n:60000
KS ci ratio: 9.120725e-02	ci left: 2.850280e-02	ci right 3.124293e-02	k: 1791	n:60000
ZNF286A   60000 perm   12 sec   (5099 perm/sec)   p_kst 2.985000e-02   p_cons 3.781667e-02   p_joint 1.431667e-02

Joint ci ratio: 1.114789e-01	ci left: 1.638868e-02	ci right 1.833733e-02	k: 1214	n:70000
Cons ci ratio: 7.441619e-02	ci left: 3.670790e-02	ci right 3.955912e-02	k: 2668	n:70000
KS ci ratio: 8.447632e-02	ci left: 2.858075e-02	ci right 3.111557e-02	k: 2088	n:70000
ZNF286A   70000 perm   14 sec   (5024 perm/sec)   p_kst 2.982857e-02   p_cons 3.811429e-02   p_joint 1.734286e-02

Joint ci ratio: 9.335884e-02	ci left: 2.055490e-02	ci right 2.258000e-02	k: 1724	n:80000
Cons ci ratio: 6.931860e-02	ci left: 3.710352e-02	ci right 3.978009e-02	k: 3074	n:80000
KS ci ratio: 7.914744e-02	ci left: 2.857126e-02	ci right 3.093800e-02	k: 2379	n:80000
ZNF286A   80000 perm   16 sec   (4965 perm/sec)   p_kst 2.973750e-02   p_cons 3.842500e-02   p_joint 2.155000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF286A.2_1586_80000_0.029738_0.038425_0.02155.png
                gene_name: ZNF286A
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 79 percent done.
ZNF311
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
Cons ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
ZNF311   10000 perm   1 sec   (6909 perm/sec)   p_kst 8.280000e-02   p_cons 2.727000e-01   p_joint 2.085000e-01

Joint ci ratio: 2.966672e-02	ci left: 4.591168e-01	ci right 4.729930e-01	k: 9321	n:20000
Cons ci ratio: 4.555988e-02	ci left: 2.639552e-01	ci right 2.763117e-01	k: 5402	n:20000
KS ci ratio: 9.010439e-02	ci left: 8.254157e-02	ci right 9.037914e-02	k: 1728	n:20000
ZNF311   20000 perm   3 sec   (6176 perm/sec)   p_kst 8.640000e-02   p_cons 2.701000e-01   p_joint 4.660500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF311.2_2025_20000_0.0864_0.2701_0.46605.png
                gene_name: ZNF311
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 80 percent done.
ZNF320
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
Cons ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
KS ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
ZNF320   10000 perm   2 sec   (6606 perm/sec)   p_kst 2.558000e-01   p_cons 7.341000e-01   p_joint 6.849000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF320.2_1542_10000_0.2558_0.7341_0.6849.png
                gene_name: ZNF320
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 81 percent done.
ZNF322B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
ZNF322B   10000 perm   1 sec   (7052 perm/sec)   p_kst 1.110000e-02   p_cons 9.300000e-02   p_joint 1.110000e-02

Joint ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
Cons ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
KS ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
ZNF322B   20000 perm   3 sec   (6470 perm/sec)   p_kst 1.125000e-02   p_cons 9.425000e-02   p_joint 1.125000e-02

Joint ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
Cons ci ratio: 7.067761e-02	ci left: 8.970356e-02	ci right 9.630883e-02	k: 2789	n:30000
KS ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
ZNF322B   30000 perm   5 sec   (6200 perm/sec)   p_kst 1.156667e-02   p_cons 9.296667e-02   p_joint 1.156667e-02

Joint ci ratio: 1.791708e-01	ci left: 1.076482e-02	ci right 1.290693e-02	k: 472	n:40000
Cons ci ratio: 6.151926e-02	ci left: 8.930805e-02	ci right 9.500132e-02	k: 3685	n:40000
KS ci ratio: 1.791708e-01	ci left: 1.076482e-02	ci right 1.290693e-02	k: 472	n:40000
ZNF322B   40000 perm   7 sec   (6014 perm/sec)   p_kst 1.180000e-02   p_cons 9.212500e-02   p_joint 1.180000e-02

Joint ci ratio: 1.592030e-01	ci left: 1.102558e-02	ci right 1.295170e-02	k: 598	n:50000
Cons ci ratio: 5.512681e-02	ci left: 8.930260e-02	ci right 9.438490e-02	k: 4591	n:50000
KS ci ratio: 1.592030e-01	ci left: 1.102558e-02	ci right 1.295170e-02	k: 598	n:50000
ZNF322B   50000 perm   9 sec   (5855 perm/sec)   p_kst 1.196000e-02   p_cons 9.182000e-02   p_joint 1.196000e-02

Joint ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
Cons ci ratio: 5.048733e-02	ci left: 8.899028e-02	ci right 9.361601e-02	k: 5477	n:60000
KS ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
ZNF322B   60000 perm   11 sec   (5709 perm/sec)   p_kst 1.198333e-02   p_cons 9.128333e-02   p_joint 1.198333e-02

Joint ci ratio: 1.337946e-01	ci left: 1.130320e-02	ci right 1.293762e-02	k: 847	n:70000
Cons ci ratio: 4.675028e-02	ci left: 8.913367e-02	ci right 9.341457e-02	k: 6388	n:70000
KS ci ratio: 1.337946e-01	ci left: 1.130320e-02	ci right 1.293762e-02	k: 847	n:70000
ZNF322B   70000 perm   13 sec   (5561 perm/sec)   p_kst 1.210000e-02   p_cons 9.125714e-02   p_joint 1.210000e-02

Joint ci ratio: 1.256229e-01	ci left: 1.126908e-02	ci right 1.279162e-02	k: 961	n:80000
Cons ci ratio: 4.369048e-02	ci left: 8.942404e-02	ci right 9.343065e-02	k: 7313	n:80000
KS ci ratio: 1.256229e-01	ci left: 1.126908e-02	ci right 1.279162e-02	k: 961	n:80000
ZNF322B   80000 perm   15 sec   (5438 perm/sec)   p_kst 1.201250e-02   p_cons 9.141250e-02   p_joint 1.201250e-02

Joint ci ratio: 1.188980e-01	ci left: 1.122334e-02	ci right 1.265282e-02	k: 1073	n:90000
Cons ci ratio: 4.116221e-02	ci left: 8.965701e-02	ci right 9.343603e-02	k: 8238	n:90000
KS ci ratio: 1.188980e-01	ci left: 1.122334e-02	ci right 1.265282e-02	k: 1073	n:90000
ZNF322B   90000 perm   17 sec   (5330 perm/sec)   p_kst 1.192222e-02   p_cons 9.153333e-02   p_joint 1.192222e-02

Joint ci ratio: 1.117741e-01	ci left: 1.147044e-02	ci right 1.283808e-02	k: 1214	n:100000
Cons ci ratio: 3.906271e-02	ci left: 8.970006e-02	ci right 9.328368e-02	k: 9148	n:100000
KS ci ratio: 1.117741e-01	ci left: 1.147044e-02	ci right 1.283808e-02	k: 1214	n:100000
ZNF322B   100000 perm   19 sec   (5219 perm/sec)   p_kst 1.214000e-02   p_cons 9.148000e-02   p_joint 1.214000e-02

Joint ci ratio: 1.065927e-01	ci left: 1.149765e-02	ci right 1.280099e-02	k: 1335	n:110000
Cons ci ratio: 3.727523e-02	ci left: 8.964917e-02	ci right 9.306332e-02	k: 10048	n:110000
KS ci ratio: 1.065927e-01	ci left: 1.149765e-02	ci right 1.280099e-02	k: 1335	n:110000
ZNF322B   110000 perm   21 sec   (5132 perm/sec)   p_kst 1.213636e-02   p_cons 9.134545e-02   p_joint 1.213636e-02

Joint ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
Cons ci ratio: 3.560536e-02	ci left: 9.010589e-02	ci right 9.338054e-02	k: 11008	n:120000
KS ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
ZNF322B   120000 perm   24 sec   (5041 perm/sec)   p_kst 1.222500e-02   p_cons 9.173333e-02   p_joint 1.222500e-02

Joint ci ratio: 9.804822e-02	ci left: 1.155026e-02	ci right 1.274857e-02	k: 1578	n:130000
Cons ci ratio: 3.415561e-02	ci left: 9.042650e-02	ci right 9.357634e-02	k: 11959	n:130000
KS ci ratio: 9.804822e-02	ci left: 1.155026e-02	ci right 1.274857e-02	k: 1578	n:130000
ZNF322B   130000 perm   26 sec   (4952 perm/sec)   p_kst 1.213846e-02   p_cons 9.199231e-02   p_joint 1.213846e-02

Outputting figure to mutsig2_images.part000000000196/ZNF322B.2_1213_130000_0.012138_0.091992_0.012138.png
                gene_name: ZNF322B
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 83 percent done.
ZNF329
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
Cons ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
ZNF329   10000 perm   1 sec   (6800 perm/sec)   p_kst 2.210000e-02   p_cons 8.318000e-01   p_joint 3.956000e-01

Joint ci ratio: 1.034797e-02	ci left: 8.730794e-01	ci right 8.822105e-01	k: 17554	n:20000
Cons ci ratio: 1.258510e-02	ci left: 8.238104e-01	ci right 8.342937e-01	k: 16582	n:20000
KS ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
ZNF329   20000 perm   3 sec   (6078 perm/sec)   p_kst 2.050000e-02   p_cons 8.291000e-01   p_joint 8.777000e-01

Joint ci ratio: 1.388729e-02	ci left: 7.213839e-01	ci right 7.315055e-01	k: 21794	n:30000
Cons ci ratio: 1.026709e-02	ci left: 8.250276e-01	ci right 8.335752e-01	k: 24880	n:30000
KS ci ratio: 1.528002e-01	ci left: 1.982433e-02	ci right 2.313591e-02	k: 643	n:30000
ZNF329   30000 perm   5 sec   (5765 perm/sec)   p_kst 2.143333e-02   p_cons 8.293333e-01   p_joint 7.264667e-01

Joint ci ratio: 1.512106e-02	ci left: 6.221139e-01	ci right 6.316177e-01	k: 25075	n:40000
Cons ci ratio: 9.550614e-03	ci left: 8.042313e-01	ci right 8.119740e-01	k: 32325	n:40000
KS ci ratio: 1.308321e-01	ci left: 2.051221e-02	ci right 2.340777e-02	k: 877	n:40000
ZNF329   40000 perm   7 sec   (5556 perm/sec)   p_kst 2.192500e-02   p_cons 8.081250e-01   p_joint 6.268750e-01

Joint ci ratio: 1.024713e-02	ci left: 7.414971e-01	ci right 7.491544e-01	k: 37267	n:50000
Cons ci ratio: 7.963810e-03	ci left: 8.256103e-01	ci right 8.322315e-01	k: 41447	n:50000
KS ci ratio: 1.173759e-01	ci left: 2.053783e-02	ci right 2.311810e-02	k: 1090	n:50000
ZNF329   50000 perm   9 sec   (5385 perm/sec)   p_kst 2.180000e-02   p_cons 8.289400e-01   p_joint 7.453400e-01

Joint ci ratio: 5.703194e-03	ci left: 8.847595e-01	ci right 8.898363e-01	k: 53239	n:60000
Cons ci ratio: 7.305512e-03	ci left: 8.245031e-01	ci right 8.305652e-01	k: 49653	n:60000
KS ci ratio: 1.072833e-01	ci left: 2.059769e-02	ci right 2.294888e-02	k: 1305	n:60000
ZNF329   60000 perm   11 sec   (5255 perm/sec)   p_kst 2.175000e-02   p_cons 8.275500e-01   p_joint 8.873167e-01

Joint ci ratio: 5.356802e-03	ci left: 8.820083e-01	ci right 8.867598e-01	k: 61908	n:70000
Cons ci ratio: 6.758330e-03	ci left: 8.249536e-01	ci right 8.305620e-01	k: 57944	n:70000
KS ci ratio: 1.001571e-01	ci left: 2.034070e-02	ci right 2.249923e-02	k: 1498	n:70000
ZNF329   70000 perm   14 sec   (5140 perm/sec)   p_kst 2.140000e-02   p_cons 8.277714e-01   p_joint 8.844000e-01

Joint ci ratio: 5.019076e-03	ci left: 8.818238e-01	ci right 8.862733e-01	k: 70725	n:80000
Cons ci ratio: 6.308999e-03	ci left: 8.257189e-01	ci right 8.309573e-01	k: 66268	n:80000
KS ci ratio: 9.462811e-02	ci left: 2.000536e-02	ci right 2.200459e-02	k: 1679	n:80000
ZNF329   80000 perm   16 sec   (5033 perm/sec)   p_kst 2.098750e-02   p_cons 8.283500e-01   p_joint 8.840625e-01

Outputting figure to mutsig2_images.part000000000196/ZNF329.2_1630_80000_0.020987_0.82835_0.88406.png
                gene_name: ZNF329
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 84 percent done.
ZNF34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
Cons ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
KS ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
ZNF34   10000 perm   1 sec   (6874 perm/sec)   p_kst 5.130000e-02   p_cons 2.095000e-01   p_joint 6.640000e-02

Joint ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
Cons ci ratio: 5.412034e-02	ci left: 2.021452e-01	ci right 2.134399e-01	k: 4155	n:20000
KS ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
ZNF34   20000 perm   3 sec   (6034 perm/sec)   p_kst 5.305000e-02   p_cons 2.077500e-01   p_joint 3.120000e-02

Joint ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
Cons ci ratio: 4.431490e-02	ci left: 2.022619e-01	ci right 2.114616e-01	k: 6205	n:30000
KS ci ratio: 9.553883e-02	ci left: 5.058932e-02	ci right 5.569766e-02	k: 1593	n:30000
ZNF34   30000 perm   5 sec   (5734 perm/sec)   p_kst 5.310000e-02   p_cons 2.068333e-01   p_joint 2.963333e-02

Joint ci ratio: 1.154795e-01	ci left: 2.638084e-02	ci right 2.963817e-02	k: 1119	n:40000
Cons ci ratio: 3.835064e-02	ci left: 2.031129e-01	ci right 2.110797e-01	k: 8283	n:40000
KS ci ratio: 8.305625e-02	ci left: 5.055493e-02	ci right 5.496028e-02	k: 2109	n:40000
ZNF34   40000 perm   7 sec   (5490 perm/sec)   p_kst 5.272500e-02   p_cons 2.070750e-01   p_joint 2.797500e-02

Joint ci ratio: 6.902179e-02	ci left: 5.850454e-02	ci right 6.270665e-02	k: 3029	n:50000
Cons ci ratio: 3.419157e-02	ci left: 2.045885e-01	ci right 2.117254e-01	k: 10407	n:50000
KS ci ratio: 7.512607e-02	ci left: 4.969669e-02	ci right 5.359557e-02	k: 2581	n:50000
ZNF34   50000 perm   9 sec   (5318 perm/sec)   p_kst 5.162000e-02   p_cons 2.081400e-01   p_joint 6.058000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF34.2_1703_50000_0.05162_0.20814_0.06058.png
                gene_name: ZNF34
               theta_stop: 0.075 
                    nperm: 50000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 86 percent done.
ZNF35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.164863e-03	ci left: 9.544052e-01	ci right 9.623250e-01	k: 9585	n:10000
Cons ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
ZNF35   10000 perm   1 sec   (6748 perm/sec)   p_kst 3.172000e-01   p_cons 6.461000e-01   p_joint 9.585000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF35.2_1596_10000_0.3172_0.6461_0.9585.png
                gene_name: ZNF35
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 87 percent done.
ZNF354A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
KS ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
ZNF354A   10000 perm   2 sec   (6554 perm/sec)   p_kst 7.418000e-01   p_cons 8.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF354A.2_1834_10000_0.7418_0.8167_1.png
                gene_name: ZNF354A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ZNF354B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
Cons ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
KS ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
ZNF354B   10000 perm   1 sec   (6674 perm/sec)   p_kst 8.056000e-01   p_cons 8.670000e-01   p_joint 9.407000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF354B.2_1855_10000_0.8056_0.867_0.9407.png
                gene_name: ZNF354B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 90 percent done.
ZNF365
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
Cons ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
ZNF365   10000 perm   2 sec   (5688 perm/sec)   p_kst 1.060000e-02   p_cons 5.340000e-02   p_joint 5.730000e-02

Joint ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
Cons ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
KS ci ratio: 2.628223e-01	ci left: 9.554158e-03	ci right 1.249060e-02	k: 219	n:20000
ZNF365   20000 perm   4 sec   (5626 perm/sec)   p_kst 1.095000e-02   p_cons 5.165000e-02   p_joint 4.630000e-02

Joint ci ratio: 1.057021e-01	ci left: 4.151182e-02	ci right 4.617704e-02	k: 1314	n:30000
Cons ci ratio: 9.614550e-02	ci left: 4.997038e-02	ci right 5.505005e-02	k: 1574	n:30000
KS ci ratio: 2.077039e-01	ci left: 1.051398e-02	ci right 1.298193e-02	k: 351	n:30000
ZNF365   30000 perm   5 sec   (5515 perm/sec)   p_kst 1.170000e-02   p_cons 5.246667e-02   p_joint 4.380000e-02

Joint ci ratio: 1.803318e-01	ci left: 1.062150e-02	ci right 1.275027e-02	k: 466	n:40000
Cons ci ratio: 8.355913e-02	ci left: 4.996678e-02	ci right 5.434852e-02	k: 2085	n:40000
KS ci ratio: 1.795553e-01	ci left: 1.071704e-02	ci right 1.285471e-02	k: 470	n:40000
ZNF365   40000 perm   7 sec   (5399 perm/sec)   p_kst 1.175000e-02   p_cons 5.212500e-02   p_joint 1.165000e-02

Joint ci ratio: 1.366132e-01	ci left: 1.509227e-02	ci right 1.732441e-02	k: 809	n:50000
Cons ci ratio: 7.444450e-02	ci left: 5.058074e-02	ci right 5.451142e-02	k: 2626	n:50000
KS ci ratio: 1.609804e-01	ci left: 1.077589e-02	ci right 1.268143e-02	k: 585	n:50000
ZNF365   50000 perm   9 sec   (5294 perm/sec)   p_kst 1.170000e-02   p_cons 5.252000e-02   p_joint 1.618000e-02

Joint ci ratio: 5.089219e-02	ci left: 8.768870e-02	ci right 9.228439e-02	k: 5398	n:60000
Cons ci ratio: 6.830664e-02	ci left: 5.025321e-02	ci right 5.382361e-02	k: 3121	n:60000
KS ci ratio: 1.485881e-01	ci left: 1.061408e-02	ci right 1.233366e-02	k: 687	n:60000
ZNF365   60000 perm   12 sec   (5210 perm/sec)   p_kst 1.145000e-02   p_cons 5.201667e-02   p_joint 8.996667e-02

Joint ci ratio: 5.252077e-02	ci left: 7.177499e-02	ci right 7.566044e-02	k: 5159	n:70000
Cons ci ratio: 6.617979e-02	ci left: 4.614683e-02	ci right 4.931937e-02	k: 3340	n:70000
KS ci ratio: 1.383234e-01	ci left: 1.055774e-02	ci right 1.214030e-02	k: 793	n:70000
ZNF365   70000 perm   14 sec   (5109 perm/sec)   p_kst 1.132857e-02   p_cons 4.771429e-02   p_joint 7.370000e-02

Joint ci ratio: 4.599093e-02	ci left: 8.133217e-02	ci right 8.517312e-02	k: 6659	n:80000
Cons ci ratio: 6.172995e-02	ci left: 4.650423e-02	ci right 4.947866e-02	k: 3838	n:80000
KS ci ratio: 1.297103e-01	ci left: 1.055487e-02	ci right 1.203089e-02	k: 902	n:80000
ZNF365   80000 perm   16 sec   (5021 perm/sec)   p_kst 1.127500e-02   p_cons 4.797500e-02   p_joint 8.323750e-02

Joint ci ratio: 4.408183e-02	ci left: 7.898350e-02	ci right 8.255469e-02	k: 7268	n:90000
Cons ci ratio: 5.819870e-02	ci left: 4.659054e-02	ci right 4.939425e-02	k: 4318	n:90000
KS ci ratio: 1.216204e-01	ci left: 1.071666e-02	ci right 1.211510e-02	k: 1026	n:90000
ZNF365   90000 perm   18 sec   (4940 perm/sec)   p_kst 1.140000e-02   p_cons 4.797778e-02   p_joint 8.075556e-02

Joint ci ratio: 4.030166e-02	ci left: 8.468549e-02	ci right 8.817854e-02	k: 8642	n:100000
Cons ci ratio: 5.510303e-02	ci left: 4.684111e-02	ci right 4.950517e-02	k: 4816	n:100000
KS ci ratio: 1.161598e-01	ci left: 1.060552e-02	ci right 1.192306e-02	k: 1125	n:100000
ZNF365   100000 perm   21 sec   (4846 perm/sec)   p_kst 1.125000e-02   p_cons 4.816000e-02   p_joint 8.642000e-02

Joint ci ratio: 3.950308e-02	ci left: 8.053828e-02	ci right 8.379288e-02	k: 9037	n:110000
Cons ci ratio: 5.262589e-02	ci left: 4.675311e-02	ci right 4.928897e-02	k: 5281	n:110000
KS ci ratio: 1.106006e-01	ci left: 1.066605e-02	ci right 1.192355e-02	k: 1241	n:110000
ZNF365   110000 perm   23 sec   (4759 perm/sec)   p_kst 1.128182e-02   p_cons 4.800909e-02   p_joint 8.215455e-02

Joint ci ratio: 3.730560e-02	ci left: 8.268433e-02	ci right 8.583579e-02	k: 10110	n:120000
Cons ci ratio: 5.029011e-02	ci left: 4.697843e-02	ci right 4.941013e-02	k: 5782	n:120000
KS ci ratio: 1.058095e-01	ci left: 1.070963e-02	ci right 1.191416e-02	k: 1356	n:120000
ZNF365   120000 perm   26 sec   (4679 perm/sec)   p_kst 1.130000e-02   p_cons 4.818333e-02   p_joint 8.425000e-02

Joint ci ratio: 3.726978e-02	ci left: 7.695964e-02	ci right 7.988997e-02	k: 10194	n:130000
Cons ci ratio: 4.836960e-02	ci left: 4.692786e-02	ci right 4.926158e-02	k: 6251	n:130000
KS ci ratio: 1.024754e-01	ci left: 1.056004e-02	ci right 1.170807e-02	k: 1446	n:130000
ZNF365   130000 perm   28 sec   (4604 perm/sec)   p_kst 1.112308e-02   p_cons 4.808462e-02   p_joint 7.841538e-02

Joint ci ratio: 3.593402e-02	ci left: 7.693338e-02	ci right 7.975554e-02	k: 10967	n:140000
Cons ci ratio: 4.661348e-02	ci left: 4.696374e-02	ci right 4.921216e-02	k: 6731	n:140000
KS ci ratio: 9.888610e-02	ci left: 1.055079e-02	ci right 1.165531e-02	k: 1553	n:140000
ZNF365   140000 perm   31 sec   (4536 perm/sec)   p_kst 1.109286e-02   p_cons 4.807857e-02   p_joint 7.833571e-02

Outputting figure to mutsig2_images.part000000000196/ZNF365.2_2153_140000_0.011093_0.048079_0.078336.png
                gene_name: ZNF365
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.080 

Current progress: 91 percent done.
ZNF391
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
KS ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
ZNF391   10000 perm   1 sec   (6886 perm/sec)   p_kst 4.917000e-01   p_cons 5.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF391.2_1081_10000_0.4917_0.5911_1.png
                gene_name: ZNF391
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ZNF394
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
Cons ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
ZNF394   10000 perm   1 sec   (7092 perm/sec)   p_kst 7.070000e-02   p_cons 2.300000e-01   p_joint 3.284000e-01

Joint ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
Cons ci ratio: 5.050963e-02	ci left: 2.255696e-01	ci right 2.373085e-01	k: 4628	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
ZNF394   20000 perm   3 sec   (6407 perm/sec)   p_kst 7.235000e-02   p_cons 2.314000e-01   p_joint 1.098500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF394.2_1698_20000_0.07235_0.2314_0.10985.png
                gene_name: ZNF394
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 94 percent done.
ZNF395
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 96 percent done.
ZNF397
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
Cons ci ratio: 1.135904e-02	ci left: 9.171884e-01	ci right 9.277639e-01	k: 9226	n:10000
KS ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
ZNF397   10000 perm   2 sec   (6584 perm/sec)   p_kst 3.318000e-01   p_cons 9.226000e-01   p_joint 7.855000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF397.2_1807_10000_0.3318_0.9226_0.7855.png
                gene_name: ZNF397
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 97 percent done.
ZNF397OS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
ZNF397OS   10000 perm   1 sec   (6849 perm/sec)   p_kst 5.120000e-02   p_cons 5.080000e-01   p_joint 1

Joint ci ratio: 7.775489e-02	ci left: 1.083489e-01	ci right 1.171640e-01	k: 2254	n:20000
Cons ci ratio: 2.712964e-02	ci left: 5.037459e-01	ci right 5.176510e-01	k: 10214	n:20000
KS ci ratio: 1.180498e-01	ci left: 4.915761e-02	ci right 5.537338e-02	k: 1044	n:20000
ZNF397OS   20000 perm   3 sec   (6208 perm/sec)   p_kst 5.220000e-02   p_cons 5.107000e-01   p_joint 1.127000e-01

Joint ci ratio: 6.323967e-02	ci left: 1.099315e-01	ci right 1.171436e-01	k: 3405	n:30000
Cons ci ratio: 2.229555e-02	ci left: 5.017922e-01	ci right 5.131397e-01	k: 15224	n:30000
KS ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
ZNF397OS   30000 perm   5 sec   (5945 perm/sec)   p_kst 5.413333e-02   p_cons 5.074667e-01   p_joint 1.135000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF397OS.2_1497_30000_0.054133_0.50747_0.1135.png
                gene_name: ZNF397OS
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 99 percent done.
ZNF408
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000196
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 196 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1541>
Subject: Job 4422722: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1541>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000197> was used as the working directory.
Started at Wed Oct 24 18:12:23 2012
Results reported at Wed Oct 24 18:31:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000197.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000197.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 197  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000197.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1368.07 sec.
    Max Memory :      5388 MB
    Max Swap   :      7688 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
197
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 197
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 197: processing genes 17733 - 17823
Calculating significance of each gene.
Using projection method.
17733	ZNF410	9.330116e-01
17734	ZNF414	2.633486e-01
17735	ZNF415	3.593417e-01
17736	ZNF416	1.154665e-01
17737	ZNF417	7.098386e-01
17738	ZNF418	1.877533e-01
17739	ZNF419	1.966310e-01
17740	ZNF420	9.457939e-01
17741	ZNF423	9.743649e-01
17742	ZNF425	8.648118e-01
17743	ZNF426	1
17744	ZNF428	1.619733e-01
17745	ZNF429	5.975938e-01
17746	ZNF43	9.491411e-01
17747	ZNF430	3.258153e-01
17748	ZNF431	2.926123e-01
17749	ZNF432	1
17750	ZNF433	1
17751	ZNF434	6.005078e-01
17752	ZNF436	1
17753	ZNF438	3.671796e-01
17754	ZNF439	6.869151e-01
17755	ZNF44	6.685362e-01
17756	ZNF440	8.358555e-01
17757	ZNF441	1
17758	ZNF442	7.740937e-01
17759	ZNF443	1
17760	ZNF445	9.201105e-01
17761	ZNF446	1
In gene ZNF449 the following bins exceed PROBCAP:
    LUAD-50-5946-TP	categ 6	N = 1573    n = 1	mu =   7.03e-07
17762	ZNF449	8.333821e-01
17763	ZNF45	9.285165e-01
17764	ZNF451	4.173238e-01
17765	ZNF454	1.999611e-01
17766	ZNF460	4.100310e-01
17767	ZNF461	8.993741e-01
17768	ZNF462	1
17769	ZNF467	6.424899e-01
17770	ZNF468	1
17771	ZNF470	4.461492e-01
17772	ZNF471	9.678165e-01
17773	ZNF473	1
17774	ZNF474	6.911321e-01
17775	ZNF479	2.194185e-01
17776	ZNF48	7.603277e-01
17777	ZNF480	5.550798e-01
17778	ZNF483	9.329756e-01
17779	ZNF484	3.317013e-01
17780	ZNF485	1.876733e-01
17781	ZNF486	7.630299e-01
17782	ZNF488	5.025851e-01
17783	ZNF490	8.817734e-01
17784	ZNF491	6.863448e-01
17785	ZNF492	6.075091e-06
17786	ZNF493	3.895785e-01
17787	ZNF496	8.855126e-01
17788	ZNF497	1
17789	ZNF498	8.290415e-01
17790	ZNF500	8.695761e-01
17791	ZNF501	6.263875e-01
17792	ZNF502	8.521196e-01
17793	ZNF503	8.215672e-01
17794	ZNF506	7.070827e-01
17795	ZNF507	5.337384e-01
17796	ZNF510	8.186582e-01
17797	ZNF511	1
17798	ZNF512	6.914277e-01
17799	ZNF512B	1
17800	ZNF513	6.433704e-01
17801	ZNF514	4.873256e-02
17802	ZNF516	6.932171e-01
17803	ZNF517	1
17804	ZNF518A	1
17805	ZNF518B	7.697125e-01
17806	ZNF519	6.916785e-01
17807	ZNF521	1
17808	ZNF524	1
17809	ZNF526	8.301374e-01
17810	ZNF527	6.431993e-01
17811	ZNF528	3.671928e-01
17812	ZNF529	9.328148e-01
17813	ZNF530	7.268970e-01
17814	ZNF532	7.052863e-01
17815	ZNF534	2.674272e-01
17816	ZNF536	1
17817	ZNF540	1
17818	ZNF543	6.433645e-01
17819	ZNF544	8.225074e-01
17820	ZNF546	5.302039e-01
17821	ZNF547	9.520880e-02
17822	ZNF548	4.937933e-01
17823	ZNF549	6.395001e-01
Done

Running MutSig 2:
Scatter job 197: processing genes 17733 - 17823
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF536
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
Cons ci ratio: 3.724407e-02	ci left: 5.156567e-01	ci right 5.353284e-01	k: 5255	n:10000
KS ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
ZNF536   10000 perm   4 sec   (2363 perm/sec)   p_kst 1.356000e-01   p_cons 5.255000e-01   p_joint 2.393000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF536.54_3919_10000_0.1356_0.5255_0.2393.png
                gene_name: ZNF536
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 1 percent done.
ZNF521
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
Cons ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
ZNF521   10000 perm   4 sec   (2768 perm/sec)   p_kst 2.869000e-01   p_cons 1.440000e-02   p_joint 7.820000e-02

Joint ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
Cons ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
KS ci ratio: 4.341315e-02	ci left: 2.832701e-01	ci right 2.958911e-01	k: 5791	n:20000
ZNF521   20000 perm   8 sec   (2569 perm/sec)   p_kst 2.895500e-01   p_cons 1.915000e-02   p_joint 4.470000e-02

Joint ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
Cons ci ratio: 1.932223e-01	ci left: 1.222473e-02	ci right 1.487072e-02	k: 405	n:30000
KS ci ratio: 3.537795e-02	ci left: 2.852339e-01	ci right 2.955401e-01	k: 8711	n:30000
ZNF521   30000 perm   12 sec   (2496 perm/sec)   p_kst 2.903667e-01   p_cons 1.350000e-02   p_joint 3.990000e-02

Joint ci ratio: 1.003796e-01	ci left: 3.487859e-02	ci right 3.858905e-02	k: 1468	n:40000
Cons ci ratio: 1.678608e-01	ci left: 1.232011e-02	ci right 1.460133e-02	k: 537	n:40000
KS ci ratio: 3.101602e-02	ci left: 2.809278e-01	ci right 2.898034e-01	k: 11414	n:40000
ZNF521   40000 perm   16 sec   (2450 perm/sec)   p_kst 2.853500e-01   p_cons 1.342500e-02   p_joint 3.670000e-02

Joint ci ratio: 9.436618e-02	ci left: 3.178358e-02	ci right 3.495090e-02	k: 1667	n:50000
Cons ci ratio: 1.287575e-01	ci left: 1.702698e-02	ci right 1.938942e-02	k: 909	n:50000
KS ci ratio: 2.787378e-02	ci left: 2.794725e-01	ci right 2.873926e-01	k: 14171	n:50000
ZNF521   50000 perm   21 sec   (2403 perm/sec)   p_kst 2.834200e-01   p_cons 1.818000e-02   p_joint 3.334000e-02

Joint ci ratio: 8.773481e-02	ci left: 3.078550e-02	ci right 3.362665e-02	k: 1931	n:60000
Cons ci ratio: 1.172661e-01	ci left: 1.721017e-02	ci right 1.937012e-02	k: 1096	n:60000
KS ci ratio: 2.546753e-02	ci left: 2.794643e-01	ci right 2.866900e-01	k: 16984	n:60000
ZNF521   60000 perm   25 sec   (2371 perm/sec)   p_kst 2.830667e-01   p_cons 1.826667e-02   p_joint 3.218333e-02

Joint ci ratio: 7.758412e-02	ci left: 3.381894e-02	ci right 3.656262e-02	k: 2462	n:70000
Cons ci ratio: 1.051393e-01	ci left: 1.844673e-02	ci right 2.050766e-02	k: 1362	n:70000
KS ci ratio: 2.361728e-02	ci left: 2.790671e-01	ci right 2.857509e-01	k: 19768	n:70000
ZNF521   70000 perm   30 sec   (2347 perm/sec)   p_kst 2.824000e-01   p_cons 1.945714e-02   p_joint 3.517143e-02

Joint ci ratio: 7.188608e-02	ci left: 3.454773e-02	ci right 3.713607e-02	k: 2866	n:80000
Cons ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
KS ci ratio: 2.207639e-02	ci left: 2.795688e-01	ci right 2.858220e-01	k: 22615	n:80000
ZNF521   80000 perm   34 sec   (2325 perm/sec)   p_kst 2.826875e-01   p_cons 1.926250e-02   p_joint 3.582500e-02

Outputting figure to mutsig2_images.part000000000197/ZNF521.47_3964_80000_0.28269_0.019262_0.035825.png
                gene_name: ZNF521
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 3 percent done.
ZNF479
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
ZNF479   10000 perm   2 sec   (4183 perm/sec)   p_kst 8.830000e-02   p_cons 1.749000e-01   p_joint 1.559000e-01

Joint ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
Cons ci ratio: 6.066666e-02	ci left: 1.674349e-01	ci right 1.779604e-01	k: 3453	n:20000
KS ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
ZNF479   20000 perm   5 sec   (3810 perm/sec)   p_kst 8.795000e-02   p_cons 1.726500e-01   p_joint 5.415000e-02

Joint ci ratio: 5.179839e-02	ci left: 1.561318e-01	ci right 1.644674e-01	k: 4808	n:30000
Cons ci ratio: 5.028699e-02	ci left: 1.641810e-01	ci right 1.726834e-01	k: 5052	n:30000
KS ci ratio: 7.395343e-02	ci left: 8.245770e-02	ci right 8.882281e-02	k: 2568	n:30000
ZNF479   30000 perm   8 sec   (3652 perm/sec)   p_kst 8.560000e-02   p_cons 1.684000e-01   p_joint 1.602667e-01

Outputting figure to mutsig2_images.part000000000197/ZNF479.19_1591_30000_0.0856_0.1684_0.16027.png
                gene_name: ZNF479
               theta_stop: 0.074 
                    nperm: 30000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 4 percent done.
ZNF423
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
Cons ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
KS ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
ZNF423   10000 perm   3 sec   (3870 perm/sec)   p_kst 2.904000e-01   p_cons 7.311000e-01   p_joint 4.500000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF423.16_3887_10000_0.2904_0.7311_0.45.png
                gene_name: ZNF423
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 6 percent done.
ZNF462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
ZNF462   10000 perm   3 sec   (2956 perm/sec)   p_kst 8.184000e-01   p_cons 3.200000e-02   p_joint 1.040000e-01

Joint ci ratio: 6.606010e-02	ci left: 1.447323e-01	ci right 1.546698e-01	k: 2993	n:20000
Cons ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
KS ci ratio: 1.316717e-02	ci left: 8.104579e-01	ci right 8.212501e-01	k: 16318	n:20000
ZNF462   20000 perm   7 sec   (2750 perm/sec)   p_kst 8.159000e-01   p_cons 3.035000e-02   p_joint 1.496500e-01

Joint ci ratio: 5.927464e-02	ci left: 1.234492e-01	ci right 1.310232e-01	k: 3816	n:30000
Cons ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
KS ci ratio: 1.081282e-02	ci left: 8.097181e-01	ci right 8.185543e-01	k: 24425	n:30000
ZNF462   30000 perm   11 sec   (2666 perm/sec)   p_kst 8.141667e-01   p_cons 3.133333e-02   p_joint 1.272000e-01

Joint ci ratio: 4.764678e-02	ci left: 1.412658e-01	ci right 1.481858e-01	k: 5788	n:40000
Cons ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
KS ci ratio: 9.350720e-03	ci left: 8.107563e-01	ci right 8.183980e-01	k: 32584	n:40000
ZNF462   40000 perm   15 sec   (2623 perm/sec)   p_kst 8.146000e-01   p_cons 2.832500e-02   p_joint 1.447000e-01

Joint ci ratio: 4.692387e-02	ci left: 1.195986e-01	ci right 1.253653e-01	k: 6123	n:50000
Cons ci ratio: 1.021308e-01	ci left: 2.715643e-02	ci right 3.009863e-02	k: 1430	n:50000
KS ci ratio: 8.468555e-03	ci left: 8.073389e-01	ci right 8.142249e-01	k: 40540	n:50000
ZNF462   50000 perm   19 sec   (2581 perm/sec)   p_kst 8.108000e-01   p_cons 2.860000e-02   p_joint 1.224600e-01

Joint ci ratio: 4.032766e-02	ci left: 1.332995e-01	ci right 1.388024e-01	k: 8162	n:60000
Cons ci ratio: 9.268374e-02	ci left: 2.760661e-02	ci right 3.030587e-02	k: 1736	n:60000
KS ci ratio: 7.773907e-03	ci left: 8.059153e-01	ci right 8.122214e-01	k: 48545	n:60000
ZNF462   60000 perm   24 sec   (2537 perm/sec)   p_kst 8.090833e-01   p_cons 2.893333e-02   p_joint 1.360333e-01

Outputting figure to mutsig2_images.part000000000197/ZNF462.13_7569_60000_0.80908_0.028933_0.13603.png
                gene_name: ZNF462
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 7 percent done.
ZNF492
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
ZNF492   10000 perm   2 sec   (4463 perm/sec)   p_kst 5.040000e-02   p_cons 9.730000e-02   p_joint 3.590000e-02

Joint ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
Cons ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
KS ci ratio: 1.152823e-01	ci left: 5.149119e-02	ci right 5.783907e-02	k: 1092	n:20000
ZNF492   20000 perm   5 sec   (4097 perm/sec)   p_kst 5.460000e-02   p_cons 9.840000e-02   p_joint 6.060000e-02

Joint ci ratio: 8.853736e-02	ci left: 5.861147e-02	ci right 6.407386e-02	k: 1839	n:30000
Cons ci ratio: 6.845466e-02	ci left: 9.515032e-02	ci right 1.019277e-01	k: 2955	n:30000
KS ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
ZNF492   30000 perm   8 sec   (3952 perm/sec)   p_kst 5.473333e-02   p_cons 9.850000e-02   p_joint 6.130000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF492.12_1608_30000_0.054733_0.0985_0.0613.png
                gene_name: ZNF492
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 9 percent done.
ZNF425
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.964019e-02	ci left: 6.266822e-01	ci right 6.456384e-01	k: 6362	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
ZNF425   10000 perm   2 sec   (4952 perm/sec)   p_kst 4.331000e-01   p_cons 5.666000e-01   p_joint 6.362000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF425.9_2275_10000_0.4331_0.5666_0.6362.png
                gene_name: ZNF425
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 10 percent done.
ZNF518B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
Cons ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
KS ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
ZNF518B   10000 perm   2 sec   (4434 perm/sec)   p_kst 8.094000e-01   p_cons 1.542000e-01   p_joint 3.725000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF518B.8_3229_10000_0.8094_0.1542_0.3725.png
                gene_name: ZNF518B
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 12 percent done.
ZNF438
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.130578e-02	ci left: 2.812177e-01	ci right 2.991047e-01	k: 2901	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
ZNF438   10000 perm   2 sec   (4556 perm/sec)   p_kst 1.593000e-01   p_cons 4.171000e-01   p_joint 2.901000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF438.7_2510_10000_0.1593_0.4171_0.2901.png
                gene_name: ZNF438
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 13 percent done.
ZNF454
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
KS ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
ZNF454   10000 perm   2 sec   (5785 perm/sec)   p_kst 3.010000e-01   p_cons 6.138000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF454.7_1585_10000_0.301_0.6138_0.3267.png
                gene_name: ZNF454
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 14 percent done.
ZNF532
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
Cons ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KS ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
ZNF532   10000 perm   2 sec   (4301 perm/sec)   p_kst 5.490000e-02   p_cons 2.138000e-01   p_joint 7.250000e-02

Joint ci ratio: 9.044839e-02	ci left: 8.195393e-02	ci right 8.976696e-02	k: 1716	n:20000
Cons ci ratio: 5.341538e-02	ci left: 2.064516e-01	ci right 2.178322e-01	k: 4242	n:20000
KS ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
ZNF532   20000 perm   5 sec   (3892 perm/sec)   p_kst 5.580000e-02   p_cons 2.121000e-01   p_joint 8.580000e-02

Joint ci ratio: 6.506401e-02	ci left: 1.044106e-01	ci right 1.114655e-01	k: 3237	n:30000
Cons ci ratio: 4.449122e-02	ci left: 2.009727e-01	ci right 2.101510e-01	k: 6166	n:30000
KS ci ratio: 9.369085e-02	ci left: 5.254451e-02	ci right 5.774206e-02	k: 1653	n:30000
ZNF532   30000 perm   8 sec   (3723 perm/sec)   p_kst 5.510000e-02   p_cons 2.055333e-01   p_joint 1.079000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF532.7_3938_30000_0.0551_0.20553_0.1079.png
                gene_name: ZNF532
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 16 percent done.
ZNF416
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 3.058833e-02	ci left: 6.119096e-01	ci right 6.310196e-01	k: 6215	n:10000
ZNF416   10000 perm   2 sec   (5587 perm/sec)   p_kst 6.215000e-01   p_cons 1.763000e-01   p_joint 3.061000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF416.6_1801_10000_0.6215_0.1763_0.3061.png
                gene_name: ZNF416
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
ZNF418
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
Cons ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
KS ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
ZNF418   10000 perm   2 sec   (5523 perm/sec)   p_kst 5.043000e-01   p_cons 1.460000e-02   p_joint 4.640000e-02

Joint ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
Cons ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
KS ci ratio: 2.745721e-02	ci left: 4.977455e-01	ci right 5.116531e-01	k: 10094	n:20000
ZNF418   20000 perm   4 sec   (4860 perm/sec)   p_kst 5.047000e-01   p_cons 1.460000e-02   p_joint 5.190000e-02

Joint ci ratio: 1.080431e-01	ci left: 3.975795e-02	ci right 4.433128e-02	k: 1260	n:30000
Cons ci ratio: 1.949329e-01	ci left: 1.200260e-02	ci right 1.462624e-02	k: 398	n:30000
KS ci ratio: 2.235062e-02	ci left: 5.005588e-01	ci right 5.119067e-01	k: 15187	n:30000
ZNF418   30000 perm   6 sec   (4631 perm/sec)   p_kst 5.062333e-01   p_cons 1.326667e-02   p_joint 4.200000e-02

Joint ci ratio: 8.803601e-02	ci left: 4.514222e-02	ci right 4.932383e-02	k: 1888	n:40000
Cons ci ratio: 1.721268e-01	ci left: 1.169744e-02	ci right 1.392412e-02	k: 511	n:40000
KS ci ratio: 1.857177e-02	ci left: 5.219929e-01	ci right 5.318032e-01	k: 21076	n:40000
ZNF418   40000 perm   9 sec   (4489 perm/sec)   p_kst 5.269000e-01   p_cons 1.277500e-02   p_joint 4.720000e-02

Joint ci ratio: 7.240179e-02	ci left: 5.337141e-02	ci right 5.740040e-02	k: 2768	n:50000
Cons ci ratio: 1.533496e-01	ci left: 1.191002e-02	ci right 1.390713e-02	k: 644	n:50000
KS ci ratio: 1.663522e-02	ci left: 5.217920e-01	ci right 5.305650e-01	k: 26309	n:50000
ZNF418   50000 perm   11 sec   (4374 perm/sec)   p_kst 5.261800e-01   p_cons 1.288000e-02   p_joint 5.536000e-02

Joint ci ratio: 7.065342e-02	ci left: 4.707321e-02	ci right 5.053726e-02	k: 2927	n:60000
Cons ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
KS ci ratio: 1.517664e-02	ci left: 5.224787e-01	ci right 5.304854e-01	k: 31589	n:60000
ZNF418   60000 perm   14 sec   (4267 perm/sec)   p_kst 5.264833e-01   p_cons 1.306667e-02   p_joint 4.878333e-02

Joint ci ratio: 5.852537e-02	ci left: 5.846317e-02	ci right 6.200197e-02	k: 4215	n:70000
Cons ci ratio: 1.285272e-01	ci left: 1.227078e-02	ci right 1.396994e-02	k: 917	n:70000
KS ci ratio: 1.401865e-02	ci left: 5.239220e-01	ci right 5.313328e-01	k: 36934	n:70000
ZNF418   70000 perm   17 sec   (4175 perm/sec)   p_kst 5.276286e-01   p_cons 1.310000e-02   p_joint 6.021429e-02

Joint ci ratio: 5.928069e-02	ci left: 5.028661e-02	ci right 5.337100e-02	k: 4145	n:80000
Cons ci ratio: 1.205845e-01	ci left: 1.225077e-02	ci right 1.383484e-02	k: 1042	n:80000
KS ci ratio: 1.313278e-02	ci left: 5.234206e-01	ci right 5.303525e-01	k: 42151	n:80000
ZNF418   80000 perm   20 sec   (4083 perm/sec)   p_kst 5.268875e-01   p_cons 1.302500e-02   p_joint 5.181250e-02

Joint ci ratio: 5.990868e-02	ci left: 4.404903e-02	ci right 4.678037e-02	k: 4086	n:90000
Cons ci ratio: 1.143005e-01	ci left: 1.216215e-02	ci right 1.364727e-02	k: 1160	n:90000
KS ci ratio: 1.239053e-02	ci left: 5.232650e-01	ci right 5.298000e-01	k: 47388	n:90000
ZNF418   90000 perm   22 sec   (4006 perm/sec)   p_kst 5.265333e-01   p_cons 1.288889e-02   p_joint 4.540000e-02

Joint ci ratio: 5.669792e-02	ci left: 4.432507e-02	ci right 4.692137e-02	k: 4561	n:100000
Cons ci ratio: 1.086058e-01	ci left: 1.216110e-02	ci right 1.356737e-02	k: 1285	n:100000
KS ci ratio: 1.175714e-02	ci left: 5.233296e-01	ci right 5.295288e-01	k: 52643	n:100000
ZNF418   100000 perm   25 sec   (3933 perm/sec)   p_kst 5.264300e-01   p_cons 1.285000e-02   p_joint 4.561000e-02

Joint ci ratio: 5.184697e-02	ci left: 4.811777e-02	ci right 5.068788e-02	k: 5433	n:110000
Cons ci ratio: 1.043997e-01	ci left: 1.199346e-02	ci right 1.332333e-02	k: 1391	n:110000
KS ci ratio: 1.119414e-02	ci left: 5.241807e-01	ci right 5.300906e-01	k: 57985	n:110000
ZNF418   110000 perm   28 sec   (3869 perm/sec)   p_kst 5.271364e-01   p_cons 1.264545e-02   p_joint 4.939091e-02

Joint ci ratio: 5.157262e-02	ci left: 4.474749e-02	ci right 4.712452e-02	k: 5511	n:120000
Cons ci ratio: 1.004434e-01	ci left: 1.190340e-02	ci right 1.317032e-02	k: 1503	n:120000
KS ci ratio: 1.069671e-02	ci left: 5.252790e-01	ci right 5.309363e-01	k: 63373	n:120000
ZNF418   120000 perm   32 sec   (3807 perm/sec)   p_kst 5.281083e-01   p_cons 1.252500e-02   p_joint 4.592500e-02

Joint ci ratio: 5.181053e-02	ci left: 4.108311e-02	ci right 4.327583e-02	k: 5482	n:130000
Cons ci ratio: 9.696608e-02	ci left: 1.181300e-02	ci right 1.302428e-02	k: 1613	n:130000
KS ci ratio: 1.029439e-02	ci left: 5.245509e-01	ci right 5.299864e-01	k: 68545	n:130000
ZNF418   130000 perm   35 sec   (3747 perm/sec)   p_kst 5.272692e-01   p_cons 1.240769e-02   p_joint 4.216923e-02

Outputting figure to mutsig2_images.part000000000197/ZNF418.6_2043_130000_0.52727_0.012408_0.042169.png
                gene_name: ZNF418
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 19 percent done.
ZNF451
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
Cons ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
ZNF451   10000 perm   2 sec   (4491 perm/sec)   p_kst 4.277000e-01   p_cons 6.554000e-01   p_joint 6.856000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF451.6_3246_10000_0.4277_0.6554_0.6856.png
                gene_name: ZNF451
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 20 percent done.
ZNF516
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
Cons ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
ZNF516   10000 perm   2 sec   (4750 perm/sec)   p_kst 3.160000e-02   p_cons 3.290000e-01   p_joint 8.970000e-02

Joint ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
Cons ci ratio: 4.016622e-02	ci left: 3.160727e-01	ci right 3.290789e-01	k: 6451	n:20000
KS ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
ZNF516   20000 perm   5 sec   (4297 perm/sec)   p_kst 3.505000e-02   p_cons 3.225500e-01   p_joint 4.120000e-02

Joint ci ratio: 8.513746e-02	ci left: 6.318326e-02	ci right 6.883447e-02	k: 1979	n:30000
Cons ci ratio: 3.282563e-02	ci left: 3.168795e-01	ci right 3.274883e-01	k: 9665	n:30000
KS ci ratio: 1.197251e-01	ci left: 3.243089e-02	ci right 3.659322e-02	k: 1034	n:30000
ZNF516   30000 perm   7 sec   (4137 perm/sec)   p_kst 3.446667e-02   p_cons 3.221667e-01   p_joint 6.596667e-02

Joint ci ratio: 6.413112e-02	ci left: 8.267885e-02	ci right 8.818151e-02	k: 3416	n:40000
Cons ci ratio: 2.843597e-02	ci left: 3.174715e-01	ci right 3.266544e-01	k: 12882	n:40000
KS ci ratio: 1.024989e-01	ci left: 3.346411e-02	ci right 3.710376e-02	k: 1410	n:40000
ZNF516   40000 perm   10 sec   (4013 perm/sec)   p_kst 3.525000e-02   p_cons 3.220500e-01   p_joint 8.540000e-02

Joint ci ratio: 5.953828e-02	ci left: 7.739976e-02	ci right 8.216916e-02	k: 3988	n:50000
Cons ci ratio: 2.500085e-02	ci left: 3.254797e-01	ci right 3.337401e-01	k: 16480	n:50000
KS ci ratio: 9.299081e-02	ci left: 3.272182e-02	ci right 3.593254e-02	k: 1715	n:50000
ZNF516   50000 perm   13 sec   (3920 perm/sec)   p_kst 3.430000e-02   p_cons 3.296000e-01   p_joint 7.976000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF516.6_3513_50000_0.0343_0.3296_0.07976.png
                gene_name: ZNF516
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 22 percent done.
ZNF543
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
Cons ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
KS ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
ZNF543   10000 perm   2 sec   (5473 perm/sec)   p_kst 1.540000e-02   p_cons 2.454000e-01   p_joint 5.130000e-02

Joint ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
Cons ci ratio: 4.809296e-02	ci left: 2.433163e-01	ci right 2.553567e-01	k: 4986	n:20000
KS ci ratio: 2.242329e-01	ci left: 1.336119e-02	ci right 1.678192e-02	k: 300	n:20000
ZNF543   20000 perm   4 sec   (4888 perm/sec)   p_kst 1.500000e-02   p_cons 2.493000e-01   p_joint 3.695000e-02

Joint ci ratio: 1.349218e-01	ci left: 2.551747e-02	ci right 2.924148e-02	k: 820	n:30000
Cons ci ratio: 3.933264e-02	ci left: 2.438165e-01	ci right 2.536322e-01	k: 7461	n:30000
KS ci ratio: 1.807637e-01	ci left: 1.403701e-02	ci right 1.685797e-02	k: 462	n:30000
ZNF543   30000 perm   7 sec   (4608 perm/sec)   p_kst 1.540000e-02   p_cons 2.487000e-01   p_joint 2.733333e-02

Joint ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
Cons ci ratio: 3.419196e-02	ci left: 2.430779e-01	ci right 2.515588e-01	k: 9892	n:40000
KS ci ratio: 1.533403e-01	ci left: 1.484121e-02	ci right 1.732977e-02	k: 642	n:40000
ZNF543   40000 perm   9 sec   (4472 perm/sec)   p_kst 1.605000e-02   p_cons 2.473000e-01   p_joint 3.700000e-02

Joint ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
Cons ci ratio: 3.059087e-02	ci left: 2.434236e-01	ci right 2.510058e-01	k: 12360	n:50000
KS ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
ZNF543   50000 perm   11 sec   (4366 perm/sec)   p_kst 1.614000e-02   p_cons 2.472000e-01   p_joint 3.028000e-02

Joint ci ratio: 1.049651e-01	ci left: 2.152301e-02	ci right 2.392347e-02	k: 1362	n:60000
Cons ci ratio: 2.870497e-02	ci left: 2.337014e-01	ci right 2.405241e-01	k: 14226	n:60000
KS ci ratio: 1.290285e-01	ci left: 1.417165e-02	ci right 1.614232e-02	k: 908	n:60000
ZNF543   60000 perm   14 sec   (4283 perm/sec)   p_kst 1.513333e-02   p_cons 2.371000e-01   p_joint 2.270000e-02

Joint ci ratio: 9.807137e-02	ci left: 2.121885e-02	ci right 2.342099e-02	k: 1561	n:70000
Cons ci ratio: 2.654543e-02	ci left: 2.343655e-01	ci right 2.406848e-01	k: 16626	n:70000
KS ci ratio: 1.193716e-01	ci left: 1.426505e-02	ci right 1.608975e-02	k: 1061	n:70000
ZNF543   70000 perm   17 sec   (4205 perm/sec)   p_kst 1.515714e-02   p_cons 2.375143e-01   p_joint 2.230000e-02

Joint ci ratio: 7.675379e-02	ci left: 3.036176e-02	ci right 3.279737e-02	k: 2525	n:80000
Cons ci ratio: 2.479529e-02	ci left: 2.350896e-01	ci right 2.410044e-01	k: 19043	n:80000
KS ci ratio: 1.115089e-01	ci left: 1.436355e-02	ci right 1.607187e-02	k: 1216	n:80000
ZNF543   80000 perm   19 sec   (4127 perm/sec)   p_kst 1.520000e-02   p_cons 2.380375e-01   p_joint 3.156250e-02

Joint ci ratio: 7.126773e-02	ci left: 3.136196e-02	ci right 3.369052e-02	k: 2926	n:90000
Cons ci ratio: 2.338547e-02	ci left: 2.351322e-01	ci right 2.407070e-01	k: 21412	n:90000
KS ci ratio: 1.055680e-01	ci left: 1.429173e-02	ci right 1.589530e-02	k: 1357	n:90000
ZNF543   90000 perm   22 sec   (4036 perm/sec)   p_kst 1.507778e-02   p_cons 2.379111e-01   p_joint 3.251111e-02

Joint ci ratio: 6.639853e-02	ci left: 3.256057e-02	ci right 3.480659e-02	k: 3367	n:100000
Cons ci ratio: 2.218738e-02	ci left: 2.352436e-01	ci right 2.405316e-01	k: 23788	n:100000
KS ci ratio: 1.006903e-01	ci left: 1.417770e-02	ci right 1.569063e-02	k: 1492	n:100000
ZNF543   100000 perm   25 sec   (3961 perm/sec)   p_kst 1.492000e-02   p_cons 2.378800e-01   p_joint 3.367000e-02

Joint ci ratio: 7.893709e-02	ci left: 2.106101e-02	ci right 2.280069e-02	k: 2411	n:110000
Cons ci ratio: 2.061846e-02	ci left: 2.447706e-01	ci right 2.498790e-01	k: 27205	n:110000
KS ci ratio: 9.622179e-02	ci left: 1.414793e-02	ci right 1.558690e-02	k: 1634	n:110000
ZNF543   110000 perm   28 sec   (3893 perm/sec)   p_kst 1.485455e-02   p_cons 2.473182e-01   p_joint 2.191818e-02

Outputting figure to mutsig2_images.part000000000197/ZNF543.6_1819_110000_0.014855_0.24732_0.021918.png
                gene_name: ZNF543
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 23 percent done.
ZNF420
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
ZNF420   10000 perm   2 sec   (5387 perm/sec)   p_kst 4.840000e-01   p_cons 3.078000e-01   p_joint 4.566000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF420.5_2079_10000_0.484_0.3078_0.4566.png
                gene_name: ZNF420
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
ZNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
ZNF43   10000 perm   2 sec   (5034 perm/sec)   p_kst 7.531000e-01   p_cons 6.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF43.5_2446_10000_0.7531_0.6913_1.png
                gene_name: ZNF43
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ZNF461
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
ZNF461   10000 perm   2 sec   (5753 perm/sec)   p_kst 6.198000e-01   p_cons 6.692000e-01   p_joint 8.351000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF461.5_1712_10000_0.6198_0.6692_0.8351.png
                gene_name: ZNF461
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 28 percent done.
ZNF48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
Cons ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
KS ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
ZNF48   10000 perm   2 sec   (5450 perm/sec)   p_kst 5.220000e-02   p_cons 5.326000e-01   p_joint 1.139000e-01

Joint ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
Cons ci ratio: 2.616888e-02	ci left: 5.217532e-01	ci right 5.356385e-01	k: 10574	n:20000
KS ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
ZNF48   20000 perm   4 sec   (4952 perm/sec)   p_kst 5.480000e-02   p_cons 5.287000e-01   p_joint 1.243500e-01

Joint ci ratio: 5.997885e-02	ci left: 1.208826e-01	ci right 1.283903e-01	k: 3738	n:30000
Cons ci ratio: 2.131447e-02	ci left: 5.242662e-01	ci right 5.355947e-01	k: 15898	n:30000
KS ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
ZNF48   30000 perm   6 sec   (4730 perm/sec)   p_kst 5.506667e-02   p_cons 5.299333e-01   p_joint 1.246000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF48.5_1865_30000_0.055067_0.52993_0.1246.png
                gene_name: ZNF48
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 29 percent done.
ZNF484
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
ZNF484   10000 perm   2 sec   (5221 perm/sec)   p_kst 1.245000e-01   p_cons 8.432000e-01   p_joint 3.061000e-01

Joint ci ratio: 5.496454e-02	ci left: 1.971470e-01	ci right 2.083395e-01	k: 4054	n:20000
Cons ci ratio: 1.238479e-02	ci left: 8.283649e-01	ci right 8.387379e-01	k: 16672	n:20000
KS ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
ZNF484   20000 perm   4 sec   (4673 perm/sec)   p_kst 1.253500e-01   p_cons 8.336000e-01   p_joint 2.027000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF484.5_2575_20000_0.12535_0.8336_0.2027.png
                gene_name: ZNF484
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 30 percent done.
ZNF493
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
ZNF493   10000 perm   2 sec   (5252 perm/sec)   p_kst 5.811000e-01   p_cons 3.830000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF493.5_2404_10000_0.5811_0.383_0.5864.png
                gene_name: ZNF493
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 32 percent done.
ZNF507
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF507   10000 perm   2 sec   (5312 perm/sec)   p_kst 1   p_cons 9.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF507.5_2882_10000_1_0.9925_1.png
                gene_name: ZNF507
               theta_stop: 0.0034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ZNF510
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
KS ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
ZNF510   10000 perm   2 sec   (5475 perm/sec)   p_kst 8.796000e-01   p_cons 8.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF510.5_2072_10000_0.8796_0.844_1.png
                gene_name: ZNF510
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ZNF514
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
ZNF514   10000 perm   2 sec   (5902 perm/sec)   p_kst 5.710000e-02   p_cons 3.894000e-01   p_joint 1.121000e-01

Joint ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
Cons ci ratio: 3.480140e-02	ci left: 3.813379e-01	ci right 3.948946e-01	k: 7762	n:20000
KS ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
ZNF514   20000 perm   4 sec   (5238 perm/sec)   p_kst 5.745000e-02   p_cons 3.881000e-01   p_joint 1.250000e-01

Joint ci ratio: 7.028941e-02	ci left: 9.062205e-02	ci right 9.725683e-02	k: 2817	n:30000
Cons ci ratio: 2.841815e-02	ci left: 3.825467e-01	ci right 3.936083e-01	k: 11642	n:30000
KS ci ratio: 9.182534e-02	ci left: 5.463110e-02	ci right 5.992171e-02	k: 1717	n:30000
ZNF514   30000 perm   6 sec   (4979 perm/sec)   p_kst 5.723333e-02   p_cons 3.880667e-01   p_joint 9.390000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF514.5_1215_30000_0.057233_0.38807_0.0939.png
                gene_name: ZNF514
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 36 percent done.
ZNF547
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
Cons ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
KS ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
ZNF547   10000 perm   2 sec   (6349 perm/sec)   p_kst 9.029000e-01   p_cons 4.022000e-01   p_joint 7.256000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF547.5_1221_10000_0.9029_0.4022_0.7256.png
                gene_name: ZNF547
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 38 percent done.
ZNF415
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
Cons ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
KS ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
ZNF415   10000 perm   2 sec   (6116 perm/sec)   p_kst 4.531000e-01   p_cons 9.560000e-01   p_joint 5.856000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF415.4_1699_10000_0.4531_0.956_0.5856.png
                gene_name: ZNF415
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 39 percent done.
ZNF419
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
Cons ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
KS ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
ZNF419   10000 perm   2 sec   (5674 perm/sec)   p_kst 9.369000e-01   p_cons 2.867000e-01   p_joint 8.239000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF419.4_1556_10000_0.9369_0.2867_0.8239.png
                gene_name: ZNF419
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 41 percent done.
ZNF430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
Cons ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
KS ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
ZNF430   10000 perm   2 sec   (6025 perm/sec)   p_kst 3.951000e-01   p_cons 9.236000e-01   p_joint 6.595000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF430.4_1733_10000_0.3951_0.9236_0.6595.png
                gene_name: ZNF430
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 42 percent done.
ZNF431
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
Cons ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
ZNF431   10000 perm   2 sec   (6033 perm/sec)   p_kst 1.653000e-01   p_cons 2.320000e-01   p_joint 2.037000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF431.4_1751_10000_0.1653_0.232_0.2037.png
                gene_name: ZNF431
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 43 percent done.
ZNF460
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
Cons ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
KS ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
ZNF460   10000 perm   2 sec   (5718 perm/sec)   p_kst 6.305000e-01   p_cons 3.235000e-01   p_joint 7.420000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF460.4_1701_10000_0.6305_0.3235_0.742.png
                gene_name: ZNF460
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 45 percent done.
ZNF470
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
Cons ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
ZNF470   10000 perm   2 sec   (5505 perm/sec)   p_kst 5.140000e-02   p_cons 1.923000e-01   p_joint 5.070000e-02

Joint ci ratio: 8.364291e-02	ci left: 9.479621e-02	ci right 1.031208e-01	k: 1978	n:20000
Cons ci ratio: 5.667008e-02	ci left: 1.875504e-01	ci right 1.985390e-01	k: 3860	n:20000
KS ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
ZNF470   20000 perm   4 sec   (4901 perm/sec)   p_kst 5.205000e-02   p_cons 1.930000e-01   p_joint 9.890000e-02

Joint ci ratio: 6.035749e-02	ci left: 1.195337e-01	ci right 1.270061e-01	k: 3697	n:30000
Cons ci ratio: 4.589098e-02	ci left: 1.911244e-01	ci right 2.001346e-01	k: 5868	n:30000
KS ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
ZNF470   30000 perm   6 sec   (4651 perm/sec)   p_kst 5.143333e-02   p_cons 1.956000e-01   p_joint 1.232333e-01

Outputting figure to mutsig2_images.part000000000197/ZNF470.3_2170_30000_0.051433_0.1956_0.12323.png
                gene_name: ZNF470
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 46 percent done.
ZNF474
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
Cons ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
KS ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
ZNF474   10000 perm   2 sec   (6364 perm/sec)   p_kst 6.095000e-01   p_cons 5.039000e-01   p_joint 7.218000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF474.4_1099_10000_0.6095_0.5039_0.7218.png
                gene_name: ZNF474
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 48 percent done.
ZNF483
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
Cons ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
KS ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
ZNF483   10000 perm   2 sec   (5175 perm/sec)   p_kst 6.095000e-01   p_cons 9.900000e-03   p_joint 8.620000e-02

Joint ci ratio: 9.880999e-02	ci left: 6.933431e-02	ci right 7.659043e-02	k: 1458	n:20000
Cons ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
KS ci ratio: 2.210883e-02	ci left: 6.043531e-01	ci right 6.179146e-01	k: 12223	n:20000
ZNF483   20000 perm   4 sec   (4678 perm/sec)   p_kst 6.111500e-01   p_cons 9.700000e-03   p_joint 7.290000e-02

Joint ci ratio: 8.445447e-02	ci left: 6.416347e-02	ci right 6.985406e-02	k: 2009	n:30000
Cons ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
KS ci ratio: 1.802742e-02	ci left: 6.062580e-01	ci right 6.173203e-01	k: 18354	n:30000
ZNF483   30000 perm   7 sec   (4471 perm/sec)   p_kst 6.118000e-01   p_cons 9.333333e-03   p_joint 6.696667e-02

Joint ci ratio: 8.518715e-02	ci left: 4.812934e-02	ci right 5.243625e-02	k: 2010	n:40000
Cons ci ratio: 2.009341e-01	ci left: 8.477597e-03	ci right 1.039463e-02	k: 376	n:40000
KS ci ratio: 1.559673e-02	ci left: 6.074797e-01	ci right 6.170540e-01	k: 24491	n:40000
ZNF483   40000 perm   9 sec   (4348 perm/sec)   p_kst 6.122750e-01   p_cons 9.400000e-03   p_joint 5.025000e-02

Joint ci ratio: 8.876490e-02	ci left: 3.587122e-02	ci right 3.922275e-02	k: 1876	n:50000
Cons ci ratio: 1.784358e-01	ci left: 8.706537e-03	ci right 1.043112e-02	k: 477	n:50000
KS ci ratio: 1.402539e-02	ci left: 6.054279e-01	ci right 6.139993e-01	k: 30486	n:50000
ZNF483   50000 perm   12 sec   (4223 perm/sec)   p_kst 6.097200e-01   p_cons 9.540000e-03   p_joint 3.752000e-02

Joint ci ratio: 8.022766e-02	ci left: 3.672935e-02	ci right 3.981552e-02	k: 2295	n:60000
Cons ci ratio: 1.632631e-01	ci left: 8.739285e-03	ci right 1.030871e-02	k: 570	n:60000
KS ci ratio: 1.290011e-02	ci left: 6.022104e-01	ci right 6.100460e-01	k: 36368	n:60000
ZNF483   60000 perm   14 sec   (4138 perm/sec)   p_kst 6.061333e-01   p_cons 9.500000e-03   p_joint 3.825000e-02

Joint ci ratio: 7.637113e-02	ci left: 3.488448e-02	ci right 3.766841e-02	k: 2538	n:70000
Cons ci ratio: 1.514012e-01	ci left: 8.767145e-03	ci right 1.021681e-02	k: 663	n:70000
KS ci ratio: 1.197372e-02	ci left: 6.012813e-01	ci right 6.085385e-01	k: 42344	n:70000
ZNF483   70000 perm   17 sec   (4050 perm/sec)   p_kst 6.049143e-01   p_cons 9.471429e-03   p_joint 3.625714e-02

Joint ci ratio: 6.559180e-02	ci left: 4.133395e-02	ci right 4.414933e-02	k: 3418	n:80000
Cons ci ratio: 1.404926e-01	ci left: 8.960024e-03	ci right 1.032589e-02	k: 770	n:80000
KS ci ratio: 1.120983e-02	ci left: 6.011143e-01	ci right 6.079031e-01	k: 48361	n:80000
ZNF483   80000 perm   20 sec   (3978 perm/sec)   p_kst 6.045125e-01   p_cons 9.625000e-03   p_joint 4.272500e-02

Joint ci ratio: 6.954269e-02	ci left: 3.291287e-02	ci right 3.529506e-02	k: 3068	n:90000
Cons ci ratio: 1.322558e-01	ci left: 9.026978e-03	ci right 1.031603e-02	k: 869	n:90000
KS ci ratio: 1.054105e-02	ci left: 6.025651e-01	ci right 6.089615e-01	k: 54519	n:90000
ZNF483   90000 perm   23 sec   (3905 perm/sec)   p_kst 6.057667e-01   p_cons 9.655556e-03   p_joint 3.408889e-02

Joint ci ratio: 7.105058e-02	ci left: 2.848943e-02	ci right 3.059797e-02	k: 2953	n:100000
Cons ci ratio: 1.265082e-01	ci left: 8.908035e-03	ci right 1.012067e-02	k: 950	n:100000
KS ci ratio: 9.995660e-03	ci left: 6.029434e-01	ci right 6.090105e-01	k: 60598	n:100000
ZNF483   100000 perm   26 sec   (3836 perm/sec)   p_kst 6.059800e-01   p_cons 9.500000e-03   p_joint 2.953000e-02

Joint ci ratio: 6.914233e-02	ci left: 2.740838e-02	ci right 2.938022e-02	k: 3122	n:110000
Cons ci ratio: 1.270359e-01	ci left: 8.036364e-03	ci right 9.135236e-03	k: 943	n:110000
KS ci ratio: 9.547160e-03	ci left: 6.022495e-01	ci right 6.080359e-01	k: 66566	n:110000
ZNF483   110000 perm   29 sec   (3771 perm/sec)   p_kst 6.051455e-01   p_cons 8.572727e-03   p_joint 2.838182e-02

Joint ci ratio: 5.337914e-02	ci left: 4.185914e-02	ci right 4.416301e-02	k: 5160	n:120000
Cons ci ratio: 1.220960e-01	ci left: 7.996405e-03	ci right 9.044221e-03	k: 1021	n:120000
KS ci ratio: 9.191719e-03	ci left: 5.997078e-01	ci right 6.052539e-01	k: 72298	n:120000
ZNF483   120000 perm   32 sec   (3713 perm/sec)   p_kst 6.024833e-01   p_cons 8.508333e-03   p_joint 4.300000e-02

Joint ci ratio: 5.407983e-02	ci left: 3.779463e-02	ci right 3.990293e-02	k: 5049	n:130000
Cons ci ratio: 1.177449e-01	ci left: 7.955830e-03	ci right 8.958589e-03	k: 1098	n:130000
KS ci ratio: 8.828689e-03	ci left: 5.999491e-01	ci right 6.052770e-01	k: 78340	n:130000
ZNF483   130000 perm   36 sec   (3652 perm/sec)   p_kst 6.026154e-01   p_cons 8.446154e-03   p_joint 3.883846e-02

Joint ci ratio: 6.840132e-02	ci left: 2.213681e-02	ci right 2.371161e-02	k: 3208	n:140000
Cons ci ratio: 1.135363e-01	ci left: 7.963268e-03	ci right 8.928685e-03	k: 1181	n:140000
KS ci ratio: 8.520383e-03	ci left: 5.993230e-01	ci right 6.044584e-01	k: 84265	n:140000
ZNF483   140000 perm   39 sec   (3598 perm/sec)   p_kst 6.018929e-01   p_cons 8.435714e-03   p_joint 2.291429e-02

Joint ci ratio: 6.384818e-02	ci left: 2.373008e-02	ci right 2.530170e-02	k: 3676	n:150000
Cons ci ratio: 1.097927e-01	ci left: 7.963783e-03	ci right 8.895368e-03	k: 1263	n:150000
KS ci ratio: 8.244184e-03	ci left: 5.986701e-01	ci right 6.036327e-01	k: 90173	n:150000
ZNF483   150000 perm   42 sec   (3533 perm/sec)   p_kst 6.011533e-01   p_cons 8.420000e-03   p_joint 2.450667e-02

Joint ci ratio: 6.422985e-02	ci left: 2.201878e-02	ci right 2.348609e-02	k: 3639	n:160000
Cons ci ratio: 1.063966e-01	ci left: 7.964692e-03	ci right 8.865758e-03	k: 1345	n:160000
KS ci ratio: 7.993488e-03	ci left: 5.980826e-01	ci right 6.028888e-01	k: 96078	n:160000
ZNF483   160000 perm   46 sec   (3482 perm/sec)   p_kst 6.004875e-01   p_cons 8.406250e-03   p_joint 2.274375e-02

Joint ci ratio: 6.437329e-02	ci left: 2.065942e-02	ci right 2.203932e-02	k: 3628	n:170000
Cons ci ratio: 1.037378e-01	ci left: 7.897110e-03	ci right 8.766841e-03	k: 1415	n:170000
KS ci ratio: 7.755194e-03	ci left: 5.981317e-01	ci right 6.027942e-01	k: 102079	n:170000
ZNF483   170000 perm   50 sec   (3433 perm/sec)   p_kst 6.004647e-01   p_cons 8.323529e-03   p_joint 2.134118e-02

Joint ci ratio: 6.267195e-02	ci left: 2.060512e-02	ci right 2.194370e-02	k: 3828	n:180000
Cons ci ratio: 1.011658e-01	ci left: 7.853536e-03	ci right 8.695749e-03	k: 1488	n:180000
KS ci ratio: 7.532827e-03	ci left: 5.984442e-01	ci right 6.029748e-01	k: 108128	n:180000
ZNF483   180000 perm   53 sec   (3387 perm/sec)   p_kst 6.007111e-01   p_cons 8.266667e-03   p_joint 2.126667e-02

Joint ci ratio: 6.500638e-02	ci left: 1.816812e-02	ci right 1.939399e-02	k: 3567	n:190000
Cons ci ratio: 9.893588e-02	ci left: 7.789118e-03	ci right 8.604941e-03	k: 1556	n:190000
KS ci ratio: 7.336754e-03	ci left: 5.981881e-01	ci right 6.025983e-01	k: 114075	n:190000
ZNF483   190000 perm   57 sec   (3340 perm/sec)   p_kst 6.003947e-01   p_cons 8.189474e-03   p_joint 1.877368e-02

Outputting figure to mutsig2_images.part000000000197/ZNF483.4_2309_190000_0.60039_0.0081895_0.018774.png
                gene_name: ZNF483
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 49 percent done.
ZNF485
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
KS ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
ZNF485   10000 perm   2 sec   (5789 perm/sec)   p_kst 8.100000e-03   p_cons 8.456000e-01   p_joint 4.050000e-02

Joint ci ratio: 1.303669e-01	ci left: 4.042395e-02	ci right 4.610980e-02	k: 864	n:20000
Cons ci ratio: 1.178605e-02	ci left: 8.418342e-01	ci right 8.518647e-01	k: 16938	n:20000
KS ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
ZNF485   20000 perm   4 sec   (5168 perm/sec)   p_kst 7.800000e-03   p_cons 8.469000e-01   p_joint 4.320000e-02

Joint ci ratio: 9.339243e-02	ci left: 5.287047e-02	ci right 5.808270e-02	k: 1663	n:30000
Cons ci ratio: 9.946309e-03	ci left: 8.339160e-01	ci right 8.422851e-01	k: 25144	n:30000
KS ci ratio: 2.499256e-01	ci left: 7.116901e-03	ci right 9.180058e-03	k: 243	n:30000
ZNF485   30000 perm   6 sec   (4931 perm/sec)   p_kst 8.100000e-03   p_cons 8.381333e-01   p_joint 5.543333e-02

Joint ci ratio: 9.811372e-02	ci left: 3.648912e-02	ci right 4.027827e-02	k: 1534	n:40000
Cons ci ratio: 8.611569e-03	ci left: 8.345540e-01	ci right 8.417968e-01	k: 33528	n:40000
KS ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
ZNF485   40000 perm   8 sec   (4773 perm/sec)   p_kst 8.275000e-03   p_cons 8.382000e-01   p_joint 3.835000e-02

Joint ci ratio: 9.299081e-02	ci left: 3.272182e-02	ci right 3.593254e-02	k: 1715	n:50000
Cons ci ratio: 7.718278e-03	ci left: 8.343780e-01	ci right 8.408628e-01	k: 41882	n:50000
KS ci ratio: 1.944787e-01	ci left: 7.275890e-03	ci right 8.862022e-03	k: 402	n:50000
ZNF485   50000 perm   11 sec   (4635 perm/sec)   p_kst 8.040000e-03   p_cons 8.376400e-01   p_joint 3.430000e-02

Joint ci ratio: 1.090902e-01	ci left: 1.991625e-02	ci right 2.223040e-02	k: 1263	n:60000
Cons ci ratio: 7.066220e-03	ci left: 8.338688e-01	ci right 8.397986e-01	k: 50211	n:60000
KS ci ratio: 1.801051e-01	ci left: 7.127562e-03	ci right 8.553994e-03	k: 469	n:60000
ZNF485   60000 perm   13 sec   (4523 perm/sec)   p_kst 7.816667e-03   p_cons 8.368500e-01   p_joint 2.105000e-02

Joint ci ratio: 1.047871e-01	ci left: 1.857199e-02	ci right 2.063953e-02	k: 1371	n:70000
Cons ci ratio: 6.240541e-03	ci left: 8.466569e-01	ci right 8.519712e-01	k: 59453	n:70000
KS ci ratio: 1.677241e-01	ci left: 7.093169e-03	ci right 8.405272e-03	k: 541	n:70000
ZNF485   70000 perm   16 sec   (4426 perm/sec)   p_kst 7.728571e-03   p_cons 8.493286e-01   p_joint 1.958571e-02

Joint ci ratio: 7.855410e-02	ci left: 2.900039e-02	ci right 3.138384e-02	k: 2414	n:80000
Cons ci ratio: 5.837561e-03	ci left: 8.468272e-01	ci right 8.517975e-01	k: 67946	n:80000
KS ci ratio: 1.561853e-01	ci left: 7.202045e-03	ci right 8.434050e-03	k: 624	n:80000
ZNF485   80000 perm   18 sec   (4333 perm/sec)   p_kst 7.800000e-03   p_cons 8.493250e-01   p_joint 3.017500e-02

Joint ci ratio: 7.606031e-02	ci left: 2.757523e-02	ci right 2.976640e-02	k: 2579	n:90000
Cons ci ratio: 5.493239e-03	ci left: 8.474603e-01	ci right 8.521394e-01	k: 76483	n:90000
KS ci ratio: 1.470556e-01	ci left: 7.257020e-03	ci right 8.419483e-03	k: 704	n:90000
ZNF485   90000 perm   21 sec   (4248 perm/sec)   p_kst 7.822222e-03   p_cons 8.498111e-01   p_joint 2.865556e-02

Joint ci ratio: 6.413702e-02	ci left: 3.485386e-02	ci right 3.717316e-02	k: 3600	n:100000
Cons ci ratio: 5.195427e-03	ci left: 8.483653e-01	ci right 8.527943e-01	k: 85059	n:100000
KS ci ratio: 1.395392e-01	ci left: 7.283371e-03	ci right 8.385463e-03	k: 782	n:100000
ZNF485   100000 perm   24 sec   (4166 perm/sec)   p_kst 7.820000e-03   p_cons 8.505900e-01   p_joint 3.600000e-02

Joint ci ratio: 6.694581e-02	ci left: 2.921440e-02	ci right 3.124683e-02	k: 3324	n:110000
Cons ci ratio: 4.958758e-03	ci left: 8.482053e-01	ci right 8.524308e-01	k: 93536	n:110000
KS ci ratio: 1.324500e-01	ci left: 7.376499e-03	ci right 8.431512e-03	k: 868	n:110000
ZNF485   110000 perm   27 sec   (4089 perm/sec)   p_kst 7.890909e-03   p_cons 8.503273e-01   p_joint 3.021818e-02

Joint ci ratio: 6.780211e-02	ci left: 2.618037e-02	ci right 2.802591e-02	k: 3251	n:120000
Cons ci ratio: 4.737114e-03	ci left: 8.488637e-01	ci right 8.529027e-01	k: 102107	n:120000
KS ci ratio: 1.276280e-01	ci left: 7.301945e-03	ci right 8.305394e-03	k: 935	n:120000
ZNF485   120000 perm   30 sec   (4009 perm/sec)   p_kst 7.791667e-03   p_cons 8.508917e-01   p_joint 2.709167e-02

Joint ci ratio: 7.413554e-02	ci left: 2.027274e-02	ci right 2.184104e-02	k: 2736	n:130000
Cons ci ratio: 4.771202e-03	ci left: 8.365037e-01	ci right 8.405120e-01	k: 109007	n:130000
KS ci ratio: 1.224386e-01	ci left: 7.343860e-03	ci right 8.309058e-03	k: 1016	n:130000
ZNF485   130000 perm   33 sec   (3940 perm/sec)   p_kst 7.815385e-03   p_cons 8.385154e-01   p_joint 2.104615e-02

Joint ci ratio: 7.199644e-02	ci left: 1.998863e-02	ci right 2.148846e-02	k: 2902	n:140000
Cons ci ratio: 4.607237e-03	ci left: 8.360092e-01	ci right 8.398768e-01	k: 117313	n:140000
KS ci ratio: 1.182152e-01	ci left: 7.331959e-03	ci right 8.260029e-03	k: 1090	n:140000
ZNF485   140000 perm   36 sec   (3869 perm/sec)   p_kst 7.785714e-03   p_cons 8.379500e-01   p_joint 2.072857e-02

Joint ci ratio: 6.917412e-02	ci left: 2.023445e-02	ci right 2.169082e-02	k: 3143	n:150000
Cons ci ratio: 4.445493e-03	ci left: 8.364135e-01	ci right 8.401467e-01	k: 125743	n:150000
KS ci ratio: 1.137141e-01	ci left: 7.412832e-03	ci right 8.313014e-03	k: 1178	n:150000
ZNF485   150000 perm   39 sec   (3805 perm/sec)   p_kst 7.853333e-03   p_cons 8.382867e-01   p_joint 2.095333e-02

Joint ci ratio: 5.963655e-02	ci left: 2.550904e-02	ci right 2.708319e-02	k: 4206	n:160000
Cons ci ratio: 4.105953e-03	ci left: 8.489192e-01	ci right 8.524181e-01	k: 136108	n:160000
KS ci ratio: 1.099975e-01	ci left: 7.441623e-03	ci right 8.313851e-03	k: 1259	n:160000
ZNF485   160000 perm   43 sec   (3743 perm/sec)   p_kst 7.868750e-03   p_cons 8.506750e-01   p_joint 2.628750e-02

Joint ci ratio: 5.872482e-02	ci left: 2.479060e-02	ci right 2.629623e-02	k: 4341	n:170000
Cons ci ratio: 3.979091e-03	ci left: 8.492452e-01	ci right 8.526370e-01	k: 144661	n:170000
KS ci ratio: 1.067836e-01	ci left: 7.444544e-03	ci right 8.290016e-03	k: 1336	n:170000
ZNF485   170000 perm   46 sec   (3685 perm/sec)   p_kst 7.858824e-03   p_cons 8.509471e-01   p_joint 2.553529e-02

Joint ci ratio: 5.862246e-02	ci left: 2.352784e-02	ci right 2.495420e-02	k: 4362	n:180000
Cons ci ratio: 3.863208e-03	ci left: 8.495419e-01	ci right 8.528357e-01	k: 153215	n:180000
KS ci ratio: 1.037620e-01	ci left: 7.458294e-03	ci right 8.279897e-03	k: 1415	n:180000
ZNF485   180000 perm   50 sec   (3626 perm/sec)   p_kst 7.861111e-03   p_cons 8.511944e-01   p_joint 2.423333e-02

Joint ci ratio: 5.927551e-02	ci left: 2.183264e-02	ci right 2.317146e-02	k: 4274	n:190000
Cons ci ratio: 3.755398e-03	ci left: 8.499089e-01	ci right 8.531119e-01	k: 161788	n:190000
KS ci ratio: 1.015322e-01	ci left: 7.388805e-03	ci right 8.184218e-03	k: 1478	n:190000
ZNF485   190000 perm   53 sec   (3570 perm/sec)   p_kst 7.778947e-03   p_cons 8.515158e-01   p_joint 2.249474e-02

Joint ci ratio: 5.495425e-02	ci left: 2.412776e-02	ci right 2.549606e-02	k: 4961	n:200000
Cons ci ratio: 3.657062e-03	ci left: 8.501750e-01	ci right 8.532948e-01	k: 170348	n:200000
KS ci ratio: 9.873289e-02	ci left: 7.433730e-03	ci right 8.210637e-03	k: 1563	n:200000
ZNF485   200000 perm   57 sec   (3519 perm/sec)   p_kst 7.815000e-03   p_cons 8.517400e-01   p_joint 2.480500e-02

Outputting figure to mutsig2_images.part000000000197/ZNF485.4_1342_200000_0.007815_0.85174_0.024805.png
                gene_name: ZNF485
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.0078 
        ci_ks_bounds_left: 0.0074 
       ci_ks_bounds_right: 0.0082 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 51 percent done.
ZNF496
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
Cons ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
ZNF496   10000 perm   2 sec   (5986 perm/sec)   p_kst 6.129000e-01   p_cons 7.660000e-02   p_joint 3.274000e-01

Joint ci ratio: 4.843583e-02	ci left: 2.406881e-01	ci right 2.526857e-01	k: 4933	n:20000
Cons ci ratio: 9.593229e-02	ci left: 7.334198e-02	ci right 8.078153e-02	k: 1540	n:20000
KS ci ratio: 2.239358e-02	ci left: 5.982353e-01	ci right 6.118342e-01	k: 12101	n:20000
ZNF496   20000 perm   4 sec   (5300 perm/sec)   p_kst 6.050500e-01   p_cons 7.700000e-02   p_joint 2.466500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF496.4_1792_20000_0.60505_0.077_0.24665.png
                gene_name: ZNF496
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 52 percent done.
ZNF512
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
Cons ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
KS ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
ZNF512   10000 perm   2 sec   (5857 perm/sec)   p_kst 4.653000e-01   p_cons 1.313000e-01   p_joint 3.767000e-01

Joint ci ratio: 4.393587e-02	ci left: 2.784028e-01	ci right 2.909598e-01	k: 5693	n:20000
Cons ci ratio: 7.049484e-02	ci left: 1.291596e-01	ci right 1.386471e-01	k: 2677	n:20000
KS ci ratio: 2.890309e-02	ci left: 4.721050e-01	ci right 4.860011e-01	k: 9581	n:20000
ZNF512   20000 perm   4 sec   (5190 perm/sec)   p_kst 4.790500e-01   p_cons 1.338500e-01   p_joint 2.846500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF512.4_1760_20000_0.47905_0.13385_0.28465.png
                gene_name: ZNF512
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 54 percent done.
ZNF512B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
Cons ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KS ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
ZNF512B   10000 perm   2 sec   (5150 perm/sec)   p_kst 3.279000e-01   p_cons 1.086000e-01   p_joint 2.070000e-01

Joint ci ratio: 7.534660e-02	ci left: 1.146907e-01	ci right 1.237203e-01	k: 2383	n:20000
Cons ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
KS ci ratio: 4.026753e-02	ci left: 3.149787e-01	ci right 3.279732e-01	k: 6429	n:20000
ZNF512B   20000 perm   4 sec   (4613 perm/sec)   p_kst 3.214500e-01   p_cons 1.052500e-01   p_joint 1.191500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF512B.4_2743_20000_0.32145_0.10525_0.11915.png
                gene_name: ZNF512B
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 55 percent done.
ZNF528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
Cons ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
ZNF528   10000 perm   2 sec   (5950 perm/sec)   p_kst 1.074000e-01   p_cons 6.051000e-01   p_joint 1.809000e-01

Joint ci ratio: 4.350829e-02	ci left: 2.823761e-01	ci right 2.949854e-01	k: 5773	n:20000
Cons ci ratio: 2.243342e-02	ci left: 5.973829e-01	ci right 6.109868e-01	k: 12084	n:20000
KS ci ratio: 8.013786e-02	ci left: 1.025519e-01	ci right 1.111628e-01	k: 2136	n:20000
ZNF528   20000 perm   4 sec   (5245 perm/sec)   p_kst 1.068000e-01   p_cons 6.042000e-01   p_joint 2.886500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF528.4_1903_20000_0.1068_0.6042_0.28865.png
                gene_name: ZNF528
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
ZNF534
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
Cons ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
KS ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
ZNF534   10000 perm   2 sec   (5578 perm/sec)   p_kst 4.515000e-01   p_cons 7.822000e-01   p_joint 6.845000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF534.4_2039_10000_0.4515_0.7822_0.6845.png
                gene_name: ZNF534
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 58 percent done.
ZNF546
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
ZNF546   10000 perm   2 sec   (5119 perm/sec)   p_kst 1.284000e-01   p_cons 8.073000e-01   p_joint 2.528000e-01

Joint ci ratio: 3.785313e-02	ci left: 3.423914e-01	ci right 3.556525e-01	k: 6980	n:20000
Cons ci ratio: 1.337272e-02	ci left: 8.057062e-01	ci right 8.166032e-01	k: 16224	n:20000
KS ci ratio: 7.063193e-02	ci left: 1.287164e-01	ci right 1.381905e-01	k: 2668	n:20000
ZNF546   20000 perm   4 sec   (4586 perm/sec)   p_kst 1.334000e-01   p_cons 8.112000e-01   p_joint 3.490000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF546.4_2531_20000_0.1334_0.8112_0.349.png
                gene_name: ZNF546
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 59 percent done.
ZNF417
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
Cons ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
KS ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
ZNF417   10000 perm   2 sec   (6062 perm/sec)   p_kst 2.519000e-01   p_cons 9.332000e-01   p_joint 5.284000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF417.3_1740_10000_0.2519_0.9332_0.5284.png
                gene_name: ZNF417
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 61 percent done.
ZNF429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
ZNF429   10000 perm   2 sec   (5688 perm/sec)   p_kst 8.096000e-01   p_cons 7.520000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF429.3_2041_10000_0.8096_0.752_1.png
                gene_name: ZNF429
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ZNF436
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
ZNF436   10000 perm   2 sec   (6224 perm/sec)   p_kst 1.275000e-01   p_cons 5.756000e-01   p_joint 3.229000e-01

Joint ci ratio: 4.776125e-02	ci left: 2.458951e-01	ci right 2.579771e-01	k: 5038	n:20000
Cons ci ratio: 2.391441e-02	ci left: 5.663600e-01	ci right 5.801187e-01	k: 11465	n:20000
KS ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
ZNF436   20000 perm   4 sec   (5431 perm/sec)   p_kst 1.276000e-01   p_cons 5.732500e-01   p_joint 2.519000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF436.3_1425_20000_0.1276_0.57325_0.2519.png
                gene_name: ZNF436
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 64 percent done.
ZNF44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
Cons ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
KS ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
ZNF44   10000 perm   2 sec   (5828 perm/sec)   p_kst 2.822000e-01   p_cons 5.127000e-01   p_joint 5.379000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF44.3_2012_10000_0.2822_0.5127_0.5379.png
                gene_name: ZNF44
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 65 percent done.
ZNF440
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
Cons ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
KS ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
ZNF440   10000 perm   2 sec   (5975 perm/sec)   p_kst 7.050000e-02   p_cons 5.704000e-01   p_joint 2.848000e-01

Joint ci ratio: 4.739660e-02	ci left: 2.487719e-01	ci right 2.608994e-01	k: 5096	n:20000
Cons ci ratio: 2.323930e-02	ci left: 5.803394e-01	ci right 5.940352e-01	k: 11744	n:20000
KS ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
ZNF440   20000 perm   4 sec   (5263 perm/sec)   p_kst 7.340000e-02   p_cons 5.872000e-01   p_joint 2.548000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF440.3_1804_20000_0.0734_0.5872_0.2548.png
                gene_name: ZNF440
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 67 percent done.
ZNF445
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
Cons ci ratio: 2.168413e-02	ci left: 7.572717e-01	ci right 7.739733e-01	k: 7657	n:10000
KS ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
ZNF445   10000 perm   2 sec   (5135 perm/sec)   p_kst 4.293000e-01   p_cons 7.657000e-01   p_joint 6.427000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF445.3_3120_10000_0.4293_0.7657_0.6427.png
                gene_name: ZNF445
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 68 percent done.
ZNF449
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
Cons ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
KS ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
ZNF449   10000 perm   2 sec   (5747 perm/sec)   p_kst 1.637000e-01   p_cons 7.230000e-02   p_joint 8.310000e-02

Joint ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
Cons ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KS ci ratio: 6.292600e-02	ci left: 1.573622e-01	ci right 1.676361e-01	k: 3249	n:20000
ZNF449   20000 perm   4 sec   (5065 perm/sec)   p_kst 1.624500e-01   p_cons 7.135000e-02   p_joint 6.695000e-02

Joint ci ratio: 8.555457e-02	ci left: 6.259523e-02	ci right 6.822263e-02	k: 1961	n:30000
Cons ci ratio: 7.690508e-02	ci left: 7.662674e-02	ci right 8.278828e-02	k: 2390	n:30000
KS ci ratio: 5.146740e-02	ci left: 1.578469e-01	ci right 1.662187e-01	k: 4860	n:30000
ZNF449   30000 perm   6 sec   (4839 perm/sec)   p_kst 1.620000e-01   p_cons 7.966667e-02   p_joint 6.536667e-02

Outputting figure to mutsig2_images.part000000000197/ZNF449.3_1573_30000_0.162_0.079667_0.065367.png
                gene_name: ZNF449
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 70 percent done.
ZNF480
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.983253e-02	ci left: 6.236666e-01	ci right 6.426558e-01	k: 6332	n:10000
Cons ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
ZNF480   10000 perm   2 sec   (6605 perm/sec)   p_kst 4.419000e-01   p_cons 5.974000e-01   p_joint 6.332000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF480.3_1624_10000_0.4419_0.5974_0.6332.png
                gene_name: ZNF480
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 71 percent done.
ZNF498
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
Cons ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
KS ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
ZNF498   10000 perm   2 sec   (6071 perm/sec)   p_kst 3.235000e-01   p_cons 3.637000e-01   p_joint 3.994000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF498.3_1655_10000_0.3235_0.3637_0.3994.png
                gene_name: ZNF498
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 72 percent done.
ZNF513
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
Cons ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
KS ci ratio: 2.771443e-02	ci left: 6.573633e-01	ci right 6.759395e-01	k: 6667	n:10000
ZNF513   10000 perm   2 sec   (6085 perm/sec)   p_kst 6.667000e-01   p_cons 3.314000e-01   p_joint 7.048000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF513.3_1642_10000_0.6667_0.3314_0.7048.png
                gene_name: ZNF513
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 74 percent done.
ZNF518A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
KS ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
ZNF518A   10000 perm   2 sec   (4572 perm/sec)   p_kst 7.823000e-01   p_cons 6.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF518A.3_4455_10000_0.7823_0.6812_1.png
                gene_name: ZNF518A
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ZNF526
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
Cons ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
KS ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
ZNF526   10000 perm   2 sec   (6304 perm/sec)   p_kst 6.982000e-01   p_cons 3.304000e-01   p_joint 7.161000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF526.3_2017_10000_0.6982_0.3304_0.7161.png
                gene_name: ZNF526
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 77 percent done.
ZNF527
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
ZNF527   10000 perm   2 sec   (5999 perm/sec)   p_kst 6.387000e-01   p_cons 8.674000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF527.3_1846_10000_0.6387_0.8674_1.png
                gene_name: ZNF527
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ZNF548
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
Cons ci ratio: 1.642413e-02	ci left: 8.435630e-01	ci right 8.576321e-01	k: 8507	n:10000
KS ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
ZNF548   10000 perm   2 sec   (5869 perm/sec)   p_kst 3.100000e-03   p_cons 8.507000e-01   p_joint 4.460000e-02

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 1.167680e-02	ci left: 8.442661e-01	ci right 8.542321e-01	k: 16986	n:20000
KS ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
ZNF548   20000 perm   4 sec   (5132 perm/sec)   p_kst 2.650000e-03   p_cons 8.493000e-01   p_joint 1.650000e-02

Joint ci ratio: 9.318510e-02	ci left: 5.309866e-02	ci right 5.832113e-02	k: 1670	n:30000
Cons ci ratio: 9.604520e-03	ci left: 8.432805e-01	ci right 8.514521e-01	k: 25422	n:30000
KS ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
ZNF548   30000 perm   6 sec   (4877 perm/sec)   p_kst 2.733333e-03   p_cons 8.474000e-01   p_joint 5.566667e-02

Joint ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
Cons ci ratio: 8.334551e-03	ci left: 8.433083e-01	ci right 8.503912e-01	k: 33875	n:40000
KS ci ratio: 3.732384e-01	ci left: 2.238026e-03	ci right 3.286237e-03	k: 109	n:40000
ZNF548   40000 perm   9 sec   (4704 perm/sec)   p_kst 2.725000e-03   p_cons 8.468750e-01   p_joint 2.982500e-02

Joint ci ratio: 9.296276e-02	ci left: 3.274138e-02	ci right 3.595298e-02	k: 1716	n:50000
Cons ci ratio: 7.471124e-03	ci left: 8.431086e-01	ci right 8.494511e-01	k: 42315	n:50000
KS ci ratio: 3.460351e-01	ci left: 2.117910e-03	ci right 3.021389e-03	k: 127	n:50000
ZNF548   50000 perm   11 sec   (4578 perm/sec)   p_kst 2.540000e-03   p_cons 8.463000e-01   p_joint 3.432000e-02

Joint ci ratio: 1.120224e-01	ci left: 1.887851e-02	ci right 2.113492e-02	k: 1199	n:60000
Cons ci ratio: 6.806596e-03	ci left: 8.439097e-01	ci right 8.496900e-01	k: 50809	n:60000
KS ci ratio: 2.854448e-01	ci left: 2.686511e-03	ci right 3.595935e-03	k: 187	n:60000
ZNF548   60000 perm   13 sec   (4459 perm/sec)   p_kst 3.116667e-03   p_cons 8.468167e-01   p_joint 1.998333e-02

Joint ci ratio: 9.348990e-02	ci left: 2.335340e-02	ci right 2.565767e-02	k: 1714	n:70000
Cons ci ratio: 6.276723e-03	ci left: 8.451606e-01	ci right 8.504963e-01	k: 59349	n:70000
KS ci ratio: 2.620823e-01	ci left: 2.768476e-03	ci right 3.616391e-03	k: 222	n:70000
ZNF548   70000 perm   16 sec   (4358 perm/sec)   p_kst 3.171429e-03   p_cons 8.478429e-01   p_joint 2.448571e-02

Joint ci ratio: 8.393984e-02	ci left: 2.542244e-02	ci right 2.766208e-02	k: 2122	n:80000
Cons ci ratio: 5.501946e-03	ci left: 8.614667e-01	ci right 8.662319e-01	k: 69109	n:80000
KS ci ratio: 2.475333e-01	ci left: 2.738372e-03	ci right 3.523346e-03	k: 249	n:80000
ZNF548   80000 perm   19 sec   (4272 perm/sec)   p_kst 3.112500e-03   p_cons 8.638625e-01   p_joint 2.652500e-02

Joint ci ratio: 7.150798e-02	ci left: 3.115449e-02	ci right 3.347578e-02	k: 2907	n:90000
Cons ci ratio: 5.174923e-03	ci left: 8.621683e-01	ci right 8.666526e-01	k: 77798	n:90000
KS ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
ZNF548   90000 perm   21 sec   (4190 perm/sec)   p_kst 3.077778e-03   p_cons 8.644222e-01   p_joint 3.230000e-02

Joint ci ratio: 7.319772e-02	ci left: 2.685853e-02	ci right 2.890898e-02	k: 2787	n:100000
Cons ci ratio: 4.895988e-03	ci left: 8.629268e-01	ci right 8.671720e-01	k: 86506	n:100000
KS ci ratio: 2.248556e-01	ci left: 2.689395e-03	ci right 3.379930e-03	k: 302	n:100000
ZNF548   100000 perm   24 sec   (4108 perm/sec)   p_kst 3.020000e-03   p_cons 8.650600e-01   p_joint 2.787000e-02

Joint ci ratio: 6.511074e-02	ci left: 3.086036e-02	ci right 3.294623e-02	k: 3508	n:110000
Cons ci ratio: 4.661698e-03	ci left: 8.633506e-01	ci right 8.673937e-01	k: 95192	n:110000
KS ci ratio: 2.144883e-01	ci left: 2.702634e-03	ci right 3.360365e-03	k: 332	n:110000
ZNF548   110000 perm   27 sec   (4031 perm/sec)   p_kst 3.018182e-03   p_cons 8.653818e-01   p_joint 3.189091e-02

Joint ci ratio: 5.560612e-02	ci left: 3.865979e-02	ci right 4.087919e-02	k: 4771	n:120000
Cons ci ratio: 4.467989e-03	ci left: 8.631877e-01	ci right 8.670613e-01	k: 103816	n:120000
KS ci ratio: 2.034758e-01	ci left: 2.769631e-03	ci right 3.404760e-03	k: 369	n:120000
ZNF548   120000 perm   30 sec   (3958 perm/sec)   p_kst 3.075000e-03   p_cons 8.651333e-01   p_joint 3.975833e-02

Joint ci ratio: 5.002690e-02	ci left: 4.397062e-02	ci right 4.623434e-02	k: 5862	n:130000
Cons ci ratio: 4.290059e-03	ci left: 8.634089e-01	ci right 8.671286e-01	k: 112486	n:130000
KS ci ratio: 1.971865e-01	ci left: 2.731933e-03	ci right 3.336725e-03	k: 393	n:130000
ZNF548   130000 perm   33 sec   (3893 perm/sec)   p_kst 3.023077e-03   p_cons 8.652769e-01   p_joint 4.509231e-02

Joint ci ratio: 5.042622e-02	ci left: 4.033418e-02	ci right 4.242772e-02	k: 5792	n:140000
Cons ci ratio: 4.129411e-03	ci left: 8.637375e-01	ci right 8.673187e-01	k: 121175	n:140000
KS ci ratio: 1.894119e-01	ci left: 2.761109e-03	ci right 3.345488e-03	k: 426	n:140000
ZNF548   140000 perm   37 sec   (3825 perm/sec)   p_kst 3.042857e-03   p_cons 8.655357e-01   p_joint 4.137143e-02

Joint ci ratio: 4.957145e-02	ci left: 3.902707e-02	ci right 4.101743e-02	k: 6002	n:150000
Cons ci ratio: 3.991027e-03	ci left: 8.637027e-01	ci right 8.671632e-01	k: 129816	n:150000
KS ci ratio: 1.847185e-01	ci left: 2.716828e-03	ci right 3.275990e-03	k: 448	n:150000
ZNF548   150000 perm   40 sec   (3762 perm/sec)   p_kst 2.986667e-03   p_cons 8.654400e-01   p_joint 4.001333e-02

Joint ci ratio: 4.385416e-02	ci left: 4.651851e-02	ci right 4.861043e-02	k: 7609	n:160000
Cons ci ratio: 3.866823e-03	ci left: 8.636048e-01	ci right 8.669569e-01	k: 138446	n:160000
KS ci ratio: 1.782814e-01	ci left: 2.743911e-03	ci right 3.286845e-03	k: 481	n:160000
ZNF548   160000 perm   43 sec   (3705 perm/sec)   p_kst 3.006250e-03   p_cons 8.652875e-01   p_joint 4.755625e-02

Joint ci ratio: 4.669456e-02	ci left: 3.887563e-02	ci right 4.074010e-02	k: 6766	n:170000
Cons ci ratio: 3.750692e-03	ci left: 8.636975e-01	ci right 8.669489e-01	k: 147106	n:170000
KS ci ratio: 1.723058e-01	ci left: 2.773735e-03	ci right 3.302262e-03	k: 515	n:170000
ZNF548   170000 perm   47 sec   (3646 perm/sec)   p_kst 3.029412e-03   p_cons 8.653294e-01   p_joint 3.980000e-02

Joint ci ratio: 4.594644e-02	ci left: 3.797295e-02	ci right 3.976416e-02	k: 6995	n:180000
Cons ci ratio: 3.649645e-03	ci left: 8.634462e-01	ci right 8.666087e-01	k: 155706	n:180000
KS ci ratio: 1.675054e-01	ci left: 2.779219e-03	ci right 3.292549e-03	k: 545	n:180000
ZNF548   180000 perm   50 sec   (3589 perm/sec)   p_kst 3.027778e-03   p_cons 8.650333e-01   p_joint 3.886111e-02

Joint ci ratio: 4.617032e-02	ci left: 3.570806e-02	ci right 3.740085e-02	k: 6944	n:190000
Cons ci ratio: 3.551768e-03	ci left: 8.635240e-01	ci right 8.666017e-01	k: 164363	n:190000
KS ci ratio: 1.632273e-01	ci left: 2.779260e-03	ci right 3.278199e-03	k: 574	n:190000
ZNF548   190000 perm   54 sec   (3533 perm/sec)   p_kst 3.021053e-03   p_cons 8.650684e-01   p_joint 3.654737e-02

Joint ci ratio: 4.772631e-02	ci left: 3.185070e-02	ci right 3.341289e-02	k: 6525	n:200000
Cons ci ratio: 3.463738e-03	ci left: 8.634343e-01	ci right 8.664351e-01	k: 172988	n:200000
KS ci ratio: 1.587348e-01	ci left: 2.798653e-03	ci right 3.285928e-03	k: 607	n:200000
ZNF548   200000 perm   58 sec   (3477 perm/sec)   p_kst 3.035000e-03   p_cons 8.649400e-01   p_joint 3.262500e-02

Joint ci ratio: 4.510755e-02	ci left: 3.393070e-02	ci right 3.550123e-02	k: 7289	n:210000
Cons ci ratio: 3.378565e-03	ci left: 8.635884e-01	ci right 8.665158e-01	k: 181662	n:210000
KS ci ratio: 1.541123e-01	ci left: 2.834682e-03	ci right 3.312531e-03	k: 644	n:210000
ZNF548   210000 perm   61 sec   (3428 perm/sec)   p_kst 3.066667e-03   p_cons 8.650571e-01   p_joint 3.470952e-02

Joint ci ratio: 4.595923e-02	ci left: 3.127295e-02	ci right 3.274851e-02	k: 7041	n:220000
Cons ci ratio: 3.303557e-03	ci left: 8.634326e-01	ci right 8.662942e-01	k: 190271	n:220000
KS ci ratio: 1.496514e-01	ci left: 2.876374e-03	ci right 3.345960e-03	k: 683	n:220000
ZNF548   220000 perm   65 sec   (3380 perm/sec)   p_kst 3.104545e-03   p_cons 8.648682e-01   p_joint 3.200455e-02

Joint ci ratio: 4.522611e-02	ci left: 3.091462e-02	ci right 3.234939e-02	k: 7274	n:230000
Cons ci ratio: 3.230321e-03	ci left: 8.635093e-01	ci right 8.663076e-01	k: 198930	n:230000
KS ci ratio: 1.465771e-01	ci left: 2.872728e-03	ci right 3.331240e-03	k: 712	n:230000
ZNF548   230000 perm   69 sec   (3331 perm/sec)   p_kst 3.095652e-03   p_cons 8.649130e-01   p_joint 3.162609e-02

Joint ci ratio: 4.383836e-02	ci left: 3.153441e-02	ci right 3.295191e-02	k: 7737	n:240000
Cons ci ratio: 3.161975e-03	ci left: 8.635636e-01	ci right 8.663026e-01	k: 207585	n:240000
KS ci ratio: 1.434909e-01	ci left: 2.877511e-03	ci right 3.326288e-03	k: 743	n:240000
ZNF548   240000 perm   73 sec   (3285 perm/sec)   p_kst 3.095833e-03   p_cons 8.649375e-01   p_joint 3.223750e-02

Joint ci ratio: 4.396440e-02	ci left: 3.014201e-02	ci right 3.150090e-02	k: 7704	n:250000
Cons ci ratio: 3.096889e-03	ci left: 8.636824e-01	ci right 8.663652e-01	k: 216257	n:250000
KS ci ratio: 1.413254e-01	ci left: 2.851130e-03	ci right 3.288516e-03	k: 766	n:250000
ZNF548   250000 perm   77 sec   (3239 perm/sec)   p_kst 3.064000e-03   p_cons 8.650280e-01   p_joint 3.081600e-02

Joint ci ratio: 4.274653e-02	ci left: 3.066064e-02	ci right 3.200368e-02	k: 8145	n:260000
Cons ci ratio: 3.040563e-03	ci left: 8.634140e-01	ci right 8.660471e-01	k: 224831	n:260000
KS ci ratio: 1.403281e-01	ci left: 2.782281e-03	ci right 3.205841e-03	k: 777	n:260000
ZNF548   260000 perm   81 sec   (3197 perm/sec)   p_kst 2.988462e-03   p_cons 8.647346e-01   p_joint 3.132692e-02

Joint ci ratio: 4.150458e-02	ci left: 3.131731e-02	ci right 3.264831e-02	k: 8634	n:270000
Cons ci ratio: 2.983221e-03	ci left: 8.634784e-01	ci right 8.660619e-01	k: 233489	n:270000
KS ci ratio: 1.375277e-01	ci left: 2.793634e-03	ci right 3.209740e-03	k: 809	n:270000
ZNF548   270000 perm   86 sec   (3153 perm/sec)   p_kst 2.996296e-03   p_cons 8.647741e-01   p_joint 3.197778e-02

Joint ci ratio: 4.563226e-02	ci left: 2.509229e-02	ci right 2.626755e-02	k: 7189	n:280000
Cons ci ratio: 3.126366e-03	ci left: 8.474928e-01	ci right 8.501500e-01	k: 237671	n:280000
KS ci ratio: 1.352111e-01	ci left: 2.790449e-03	ci right 3.198517e-03	k: 837	n:280000
ZNF548   280000 perm   90 sec   (3114 perm/sec)   p_kst 2.989286e-03   p_cons 8.488250e-01   p_joint 2.567500e-02

Joint ci ratio: 4.016345e-02	ci left: 3.116433e-02	ci right 3.244505e-02	k: 9222	n:290000
Cons ci ratio: 3.072000e-03	ci left: 8.475152e-01	ci right 8.501261e-01	k: 246159	n:290000
KS ci ratio: 1.326243e-01	ci left: 2.804209e-03	ci right 3.205825e-03	k: 870	n:290000
ZNF548   290000 perm   94 sec   (3074 perm/sec)   p_kst 3.000000e-03   p_cons 8.488241e-01   p_joint 3.180000e-02

Joint ci ratio: 4.132490e-02	ci left: 2.851790e-02	ci right 2.972455e-02	k: 8735	n:300000
Cons ci ratio: 3.018218e-03	ci left: 8.477204e-01	ci right 8.502862e-01	k: 254702	n:300000
KS ci ratio: 1.305431e-01	ci left: 2.800996e-03	ci right 3.195368e-03	k: 898	n:300000
ZNF548   300000 perm   99 sec   (3037 perm/sec)   p_kst 2.993333e-03   p_cons 8.490067e-01   p_joint 2.911667e-02

Joint ci ratio: 4.108431e-02	ci left: 2.794260e-02	ci right 2.911785e-02	k: 8843	n:310000
Cons ci ratio: 2.967571e-03	ci left: 8.478771e-01	ci right 8.504002e-01	k: 263234	n:310000
KS ci ratio: 1.286264e-01	ci left: 2.794914e-03	ci right 3.182211e-03	k: 925	n:310000
ZNF548   310000 perm   103 sec   (2999 perm/sec)   p_kst 2.983871e-03   p_cons 8.491419e-01   p_joint 2.852581e-02

Joint ci ratio: 3.959748e-02	ci left: 2.912691e-02	ci right 3.030663e-02	k: 9508	n:320000
Cons ci ratio: 2.920813e-03	ci left: 8.478990e-01	ci right 8.503822e-01	k: 271726	n:320000
KS ci ratio: 1.265258e-01	ci left: 2.801357e-03	ci right 3.182732e-03	k: 956	n:320000
ZNF548   320000 perm   108 sec   (2961 perm/sec)   p_kst 2.987500e-03   p_cons 8.491437e-01   p_joint 2.971250e-02

Joint ci ratio: 3.919554e-02	ci left: 2.884128e-02	ci right 2.999731e-02	k: 9707	n:330000
Cons ci ratio: 2.874872e-03	ci left: 8.480383e-01	ci right 8.504828e-01	k: 280257	n:330000
KS ci ratio: 1.250335e-01	ci left: 2.783970e-03	ci right 3.158176e-03	k: 979	n:330000
ZNF548   330000 perm   113 sec   (2926 perm/sec)   p_kst 2.966667e-03   p_cons 8.492636e-01   p_joint 2.941515e-02

Joint ci ratio: 3.869899e-02	ci left: 2.872693e-02	ci right 2.986346e-02	k: 9959	n:340000
Cons ci ratio: 2.831616e-03	ci left: 8.481166e-01	ci right 8.505245e-01	k: 288770	n:340000
KS ci ratio: 1.232851e-01	ci left: 2.781883e-03	ci right 3.150198e-03	k: 1007	n:340000
ZNF548   340000 perm   118 sec   (2888 perm/sec)   p_kst 2.961765e-03   p_cons 8.493235e-01   p_joint 2.929118e-02

Joint ci ratio: 3.826910e-02	ci left: 2.854844e-02	ci right 2.966509e-02	k: 10186	n:350000
Cons ci ratio: 2.791999e-03	ci left: 8.480302e-01	ci right 8.504040e-01	k: 297227	n:350000
KS ci ratio: 1.218441e-01	ci left: 2.768869e-03	ci right 3.130867e-03	k: 1031	n:350000
ZNF548   350000 perm   123 sec   (2852 perm/sec)   p_kst 2.945714e-03   p_cons 8.492200e-01   p_joint 2.910286e-02

Joint ci ratio: 3.857437e-02	ci left: 2.734794e-02	ci right 2.842635e-02	k: 10038	n:360000
Cons ci ratio: 2.752745e-03	ci left: 8.480658e-01	ci right 8.504063e-01	k: 305726	n:360000
KS ci ratio: 1.201107e-01	ci left: 2.772768e-03	ci right 3.129752e-03	k: 1061	n:360000
ZNF548   360000 perm   128 sec   (2816 perm/sec)   p_kst 2.947222e-03   p_cons 8.492389e-01   p_joint 2.788333e-02

Joint ci ratio: 3.735124e-02	ci left: 2.836790e-02	ci right 2.945030e-02	k: 10695	n:370000
Cons ci ratio: 2.716276e-03	ci left: 8.479886e-01	ci right 8.502978e-01	k: 314184	n:370000
KS ci ratio: 1.187222e-01	ci left: 2.763376e-03	ci right 3.114750e-03	k: 1086	n:370000
ZNF548   370000 perm   133 sec   (2783 perm/sec)   p_kst 2.935135e-03   p_cons 8.491459e-01   p_joint 2.890541e-02

Joint ci ratio: 3.779154e-02	ci left: 2.701362e-02	ci right 2.805676e-02	k: 10462	n:380000
Cons ci ratio: 2.681466e-03	ci left: 8.478919e-01	ci right 8.501712e-01	k: 322633	n:380000
KS ci ratio: 1.172750e-01	ci left: 2.759611e-03	ci right 3.105932e-03	k: 1113	n:380000
ZNF548   380000 perm   138 sec   (2750 perm/sec)   p_kst 2.928947e-03   p_cons 8.490342e-01   p_joint 2.753158e-02

Joint ci ratio: 3.752972e-02	ci left: 2.670188e-02	ci right 2.772568e-02	k: 10612	n:390000
Cons ci ratio: 2.647827e-03	ci left: 8.478133e-01	ci right 8.500636e-01	k: 331087	n:390000
KS ci ratio: 1.162376e-01	ci left: 2.738634e-03	ci right 3.079074e-03	k: 1133	n:390000
ZNF548   390000 perm   144 sec   (2717 perm/sec)   p_kst 2.905128e-03   p_cons 8.489410e-01   p_joint 2.721026e-02

Joint ci ratio: 3.700896e-02	ci left: 2.677736e-02	ci right 2.778950e-02	k: 10912	n:400000
Cons ci ratio: 2.615524e-03	ci left: 8.477287e-01	ci right 8.499513e-01	k: 339537	n:400000
KS ci ratio: 1.146804e-01	ci left: 2.745431e-03	ci right 3.081834e-03	k: 1164	n:400000
ZNF548   400000 perm   149 sec   (2686 perm/sec)   p_kst 2.910000e-03   p_cons 8.488425e-01   p_joint 2.728000e-02

Joint ci ratio: 3.577150e-02	ci left: 2.794684e-02	ci right 2.896715e-02	k: 11666	n:410000
Cons ci ratio: 2.585478e-03	ci left: 8.475383e-01	ci right 8.497348e-01	k: 347942	n:410000
KS ci ratio: 1.133268e-01	ci left: 2.744814e-03	ci right 3.076907e-03	k: 1192	n:410000
ZNF548   410000 perm   154 sec   (2655 perm/sec)   p_kst 2.907317e-03   p_cons 8.486390e-01   p_joint 2.845366e-02

Joint ci ratio: 3.501509e-02	ci left: 2.846860e-02	ci right 2.948553e-02	k: 12169	n:420000
Cons ci ratio: 2.554404e-03	ci left: 8.475625e-01	ci right 8.497327e-01	k: 356433	n:420000
KS ci ratio: 1.122507e-01	ci left: 2.732678e-03	ci right 3.059954e-03	k: 1215	n:420000
ZNF548   420000 perm   160 sec   (2626 perm/sec)   p_kst 2.892857e-03   p_cons 8.486500e-01   p_joint 2.897381e-02

Joint ci ratio: 3.492107e-02	ci left: 2.797239e-02	ci right 2.896886e-02	k: 12241	n:430000
Cons ci ratio: 2.524172e-03	ci left: 8.476114e-01	ci right 8.497559e-01	k: 364935	n:430000
KS ci ratio: 1.109804e-01	ci left: 2.732425e-03	ci right 3.055726e-03	k: 1243	n:430000
ZNF548   430000 perm   166 sec   (2597 perm/sec)   p_kst 2.890698e-03   p_cons 8.486860e-01   p_joint 2.846744e-02

Joint ci ratio: 3.466421e-02	ci left: 2.775339e-02	ci right 2.873465e-02	k: 12426	n:440000
Cons ci ratio: 2.495453e-03	ci left: 8.476104e-01	ci right 8.497305e-01	k: 373416	n:440000
KS ci ratio: 1.091089e-01	ci left: 2.765365e-03	ci right 3.086691e-03	k: 1286	n:440000
ZNF548   440000 perm   171 sec   (2569 perm/sec)   p_kst 2.922727e-03   p_cons 8.486727e-01   p_joint 2.824091e-02

Joint ci ratio: 3.425530e-02	ci left: 2.779318e-02	ci right 2.876402e-02	k: 12724	n:450000
Cons ci ratio: 2.468461e-03	ci left: 8.475293e-01	ci right 8.496262e-01	k: 381861	n:450000
KS ci ratio: 1.080236e-01	ci left: 2.760121e-03	ci right 3.077444e-03	k: 1312	n:450000
ZNF548   450000 perm   177 sec   (2541 perm/sec)   p_kst 2.915556e-03   p_cons 8.485800e-01   p_joint 2.827556e-02

Joint ci ratio: 3.356070e-02	ci left: 2.832074e-02	ci right 2.928956e-02	k: 13249	n:460000
Cons ci ratio: 2.441044e-03	ci left: 8.475871e-01	ci right 8.496607e-01	k: 390368	n:460000
KS ci ratio: 1.068900e-01	ci left: 2.759352e-03	ci right 3.073048e-03	k: 1340	n:460000
ZNF548   460000 perm   183 sec   (2515 perm/sec)   p_kst 2.913043e-03   p_cons 8.486261e-01   p_joint 2.880217e-02

Joint ci ratio: 3.321065e-02	ci left: 2.831105e-02	ci right 2.926924e-02	k: 13530	n:470000
Cons ci ratio: 2.414641e-03	ci left: 8.476297e-01	ci right 8.496809e-01	k: 398869	n:470000
KS ci ratio: 1.057914e-01	ci left: 2.758632e-03	ci right 3.068823e-03	k: 1368	n:470000
ZNF548   470000 perm   189 sec   (2488 perm/sec)   p_kst 2.910638e-03   p_cons 8.486574e-01   p_joint 2.878723e-02

Joint ci ratio: 3.381707e-02	ci left: 2.677056e-02	ci right 2.769349e-02	k: 13070	n:480000
Cons ci ratio: 2.389270e-03	ci left: 8.476497e-01	ci right 8.496794e-01	k: 407360	n:480000
KS ci ratio: 1.045385e-01	ci left: 2.768103e-03	ci right 3.075446e-03	k: 1401	n:480000
ZNF548   480000 perm   195 sec   (2464 perm/sec)   p_kst 2.918750e-03   p_cons 8.486667e-01   p_joint 2.722917e-02

Joint ci ratio: 3.222689e-02	ci left: 2.883766e-02	ci right 2.978424e-02	k: 14361	n:490000
Cons ci ratio: 2.363950e-03	ci left: 8.477488e-01	ci right 8.497572e-01	k: 415890	n:490000
KS ci ratio: 1.035465e-01	ci left: 2.765279e-03	ci right 3.069217e-03	k: 1428	n:490000
ZNF548   490000 perm   201 sec   (2439 perm/sec)   p_kst 2.914286e-03   p_cons 8.487551e-01   p_joint 2.930816e-02

Joint ci ratio: 3.210338e-02	ci left: 2.849096e-02	ci right 2.942251e-02	k: 14477	n:500000
Cons ci ratio: 2.339654e-03	ci left: 8.478180e-01	ci right 8.498059e-01	k: 424407	n:500000
KS ci ratio: 1.027948e-01	ci left: 2.750888e-03	ci right 3.050918e-03	k: 1449	n:500000
ZNF548   500000 perm   207 sec   (2414 perm/sec)   p_kst 2.898000e-03   p_cons 8.488140e-01   p_joint 2.895400e-02

Joint ci ratio: 3.172030e-02	ci left: 2.861314e-02	ci right 2.953732e-02	k: 14827	n:510000
Cons ci ratio: 2.316853e-03	ci left: 8.478001e-01	ci right 8.497685e-01	k: 432881	n:510000
KS ci ratio: 1.019897e-01	ci left: 2.740892e-03	ci right 3.037349e-03	k: 1472	n:510000
ZNF548   510000 perm   214 sec   (2387 perm/sec)   p_kst 2.886275e-03   p_cons 8.487863e-01   p_joint 2.907255e-02

Joint ci ratio: 3.152972e-02	ci left: 2.841198e-02	ci right 2.932405e-02	k: 15010	n:520000
Cons ci ratio: 2.295118e-03	ci left: 8.477366e-01	ci right 8.496864e-01	k: 441331	n:520000
KS ci ratio: 1.011016e-01	ci left: 2.736912e-03	ci right 3.030209e-03	k: 1498	n:520000
ZNF548   520000 perm   220 sec   (2362 perm/sec)   p_kst 2.880769e-03   p_cons 8.487135e-01   p_joint 2.886538e-02

Joint ci ratio: 3.145027e-02	ci left: 2.802932e-02	ci right 2.892679e-02	k: 15092	n:530000
Cons ci ratio: 2.274000e-03	ci left: 8.476738e-01	ci right 8.496054e-01	k: 449780	n:530000
KS ci ratio: 1.004346e-01	ci left: 2.722056e-03	ci right 3.011723e-03	k: 1518	n:530000
ZNF548   530000 perm   227 sec   (2339 perm/sec)   p_kst 2.864151e-03   p_cons 8.486415e-01   p_joint 2.847547e-02

Joint ci ratio: 3.136061e-02	ci left: 2.767921e-02	ci right 2.856290e-02	k: 15184	n:540000
Cons ci ratio: 2.253372e-03	ci left: 8.476226e-01	ci right 8.495366e-01	k: 458234	n:540000
KS ci ratio: 9.920061e-02	ci left: 2.740262e-03	ci right 3.028075e-03	k: 1556	n:540000
ZNF548   540000 perm   233 sec   (2316 perm/sec)   p_kst 2.881481e-03   p_cons 8.485815e-01   p_joint 2.811852e-02

Outputting figure to mutsig2_images.part000000000197/ZNF548.3_1654_540000_0.0028815_0.84858_0.028119.png
                gene_name: ZNF548
               theta_stop: 0.099 
                    nperm: 540000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.029 

Current progress: 80 percent done.
ZNF549
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
Cons ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
KS ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
ZNF549   10000 perm   2 sec   (5951 perm/sec)   p_kst 9.570000e-02   p_cons 3.701000e-01   p_joint 1.382000e-01

Joint ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
Cons ci ratio: 3.477211e-02	ci left: 3.817366e-01	ci right 3.952958e-01	k: 7770	n:20000
KS ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
ZNF549   20000 perm   4 sec   (5215 perm/sec)   p_kst 9.430000e-02   p_cons 3.885000e-01   p_joint 1.298000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF549.3_1896_20000_0.0943_0.3885_0.1298.png
                gene_name: ZNF549
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 81 percent done.
ZNF428
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
ZNF428   10000 perm   1 sec   (7113 perm/sec)   p_kst 7.605000e-01   p_cons 6.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF428.2_575_10000_0.7605_0.6836_1.png
                gene_name: ZNF428
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNF434
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
Cons ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
KS ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
ZNF434   10000 perm   2 sec   (6436 perm/sec)   p_kst 2.699000e-01   p_cons 6.419000e-01   p_joint 7.794000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF434.2_1470_10000_0.2699_0.6419_0.7794.png
                gene_name: ZNF434
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 84 percent done.
ZNF439
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
ZNF439   10000 perm   2 sec   (6350 perm/sec)   p_kst 1.432000e-01   p_cons 9.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF439.2_1512_10000_0.1432_0.9163_1.png
                gene_name: ZNF439
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZNF442
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
Cons ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
KS ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
ZNF442   10000 perm   2 sec   (6121 perm/sec)   p_kst 7.664000e-01   p_cons 8.210000e-01   p_joint 9.662000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF442.2_1900_10000_0.7664_0.821_0.9662.png
                gene_name: ZNF442
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 87 percent done.
ZNF45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.220488e-03	ci left: 9.956027e-01	ci right 9.978928e-01	k: 9969	n:10000
Cons ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
KS ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
ZNF45   10000 perm   2 sec   (5963 perm/sec)   p_kst 9.822000e-01   p_cons 7.435000e-01   p_joint 9.969000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF45.2_2065_10000_0.9822_0.7435_0.9969.png
                gene_name: ZNF45
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 88 percent done.
ZNF467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
Cons ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
ZNF467   10000 perm   2 sec   (6195 perm/sec)   p_kst 9.563000e-01   p_cons 4.611000e-01   p_joint 5.086000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF467.2_1804_10000_0.9563_0.4611_0.5086.png
                gene_name: ZNF467
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 90 percent done.
ZNF488
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
Cons ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
KS ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
ZNF488   10000 perm   1 sec   (6693 perm/sec)   p_kst 4.811000e-01   p_cons 7.605000e-01   p_joint 9.007000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF488.2_1027_10000_0.4811_0.7605_0.9007.png
                gene_name: ZNF488
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 91 percent done.
ZNF490
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
Cons ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
ZNF490   10000 perm   2 sec   (6248 perm/sec)   p_kst 8.571000e-01   p_cons 8.046000e-01   p_joint 9.880000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF490.2_1610_10000_0.8571_0.8046_0.988.png
                gene_name: ZNF490
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
ZNF491
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
Cons ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
KS ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
ZNF491   10000 perm   2 sec   (6533 perm/sec)   p_kst 3.355000e-01   p_cons 1.871000e-01   p_joint 3.217000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF491.2_1318_10000_0.3355_0.1871_0.3217.png
                gene_name: ZNF491
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 94 percent done.
ZNF519
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.361522e-02	ci left: 8.861619e-01	ci right 8.984085e-01	k: 8924	n:10000
Cons ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
ZNF519   10000 perm   2 sec   (6358 perm/sec)   p_kst 2.999000e-01   p_cons 4.989000e-01   p_joint 8.924000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF519.2_1635_10000_0.2999_0.4989_0.8924.png
                gene_name: ZNF519
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
ZNF530
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
KS ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
ZNF530   10000 perm   2 sec   (6159 perm/sec)   p_kst 8.314000e-01   p_cons 5.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF530.2_1812_10000_0.8314_0.5043_1.png
                gene_name: ZNF530
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ZNF540
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
ZNF540   10000 perm   2 sec   (5996 perm/sec)   p_kst 1.672000e-01   p_cons 4.613000e-01   p_joint 2.525000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF540.2_1999_10000_0.1672_0.4613_0.2525.png
                gene_name: ZNF540
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 99 percent done.
ZNF544
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
Cons ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
KS ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
ZNF544   10000 perm   2 sec   (6179 perm/sec)   p_kst 9.405000e-01   p_cons 8.013000e-01   p_joint 9.902000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF544.2_2164_10000_0.9405_0.8013_0.9902.png
                gene_name: ZNF544
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000197
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 197 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 4422726: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000198> was used as the working directory.
Started at Wed Oct 24 18:12:30 2012
Results reported at Wed Oct 24 18:22:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000198.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000198.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 198  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000198.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    499.38 sec.
    Max Memory :      5387 MB
    Max Swap   :      7696 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
198
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 198
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 198: processing genes 17824 - 17913
Calculating significance of each gene.
Using projection method.
17824	ZNF550	3.884918e-01
17825	ZNF551	7.620649e-01
17826	ZNF552	7.381147e-01
17827	ZNF554	7.778451e-01
17828	ZNF555	8.975677e-01
17829	ZNF556	1.332715e-01
17830	ZNF557	1
17831	ZNF558	5.659397e-01
17832	ZNF559	1.603993e-01
17833	ZNF560	8.865388e-01
17834	ZNF561	7.346712e-01
17835	ZNF562	1
17836	ZNF563	8.993800e-01
17837	ZNF564	8.594309e-01
17838	ZNF565	1
17839	ZNF566	2.150494e-01
17840	ZNF567	4.217580e-01
17841	ZNF568	5.278968e-01
17842	ZNF569	6.494688e-02
17843	ZNF57	1
17844	ZNF570	3.014358e-01
17845	ZNF571	1.990545e-01
17846	ZNF572	1.552851e-02
17847	ZNF573	7.796821e-01
17848	ZNF574	9.892491e-01
17849	ZNF575	1
17850	ZNF576	1
17851	ZNF577	2.914745e-01
17852	ZNF578	1.612555e-03
17853	ZNF581	1
17854	ZNF582	4.705383e-02
17855	ZNF583	8.386899e-01
17856	ZNF584	1
17857	ZNF585A	1.637092e-01
17858	ZNF585B	5.050115e-02
17859	ZNF586	3.455382e-01
17860	ZNF587	5.022339e-01
17861	ZNF589	1
17862	ZNF592	9.415064e-01
17863	ZNF593	1
17864	ZNF594	7.403248e-01
17865	ZNF595	1
17866	ZNF596	5.951479e-01
17867	ZNF597	8.256954e-02
17868	ZNF598	9.280995e-01
17869	ZNF599	1
17870	ZNF600	9.354038e-01
17871	ZNF605	1
17872	ZNF606	5.285495e-01
17873	ZNF607	1.729717e-01
In gene ZNF608 the following bins exceed PROBCAP:
    LUAD-44-2665-TP	categ 6	N = 4575    n = 1	mu =   3.68e-07
17874	ZNF608	9.239256e-01
17875	ZNF609	9.996148e-01
17876	ZNF610	5.583423e-01
17877	ZNF611	1.465330e-01
17878	ZNF613	5.834162e-01
17879	ZNF614	7.703643e-01
17880	ZNF615	7.946144e-01
17881	ZNF616	5.211897e-01
17882	ZNF618	9.907427e-01
17883	ZNF619	9.497461e-01
17884	ZNF620	5.511386e-01
17885	ZNF621	1.121614e-01
17886	ZNF622	3.724766e-01
17887	ZNF623	2.738953e-03
17888	ZNF624	5.564712e-01
17889	ZNF625	1
17890	ZNF626	7.421471e-01
17891	ZNF627	1
17892	ZNF628	9.684482e-01
17893	ZNF629	9.743830e-01
17894	ZNF630	2.760768e-01
17895	ZNF638	9.020541e-01
17896	ZNF639	8.170211e-01
17897	ZNF641	9.109753e-01
17898	ZNF642	8.899266e-01
17899	ZNF643	7.895757e-01
17900	ZNF644	9.991850e-01
17901	ZNF645	7.881255e-01
17902	ZNF646	9.999748e-01
17903	ZNF648	5.585090e-01
17904	ZNF649	7.904036e-01
17905	ZNF652	1.454137e-01
17906	ZNF653	9.716064e-01
17907	ZNF654	6.820573e-01
17908	ZNF655	7.624606e-01
17909	ZNF658	9.726312e-01
17910	ZNF660	9.329118e-02
17911	ZNF662	3.010665e-01
17912	ZNF664	5.731747e-01
17913	ZNF665	1.827102e-01
Done

Running MutSig 2:
Scatter job 198: processing genes 17824 - 17913
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
Cons ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
KS ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
ZNF644   10000 perm   3 sec   (3259 perm/sec)   p_kst 7.733000e-01   p_cons 4.390000e-01   p_joint 7.270000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF644.12_4004_10000_0.7733_0.439_0.727.png
                gene_name: ZNF644
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 2 percent done.
ZNF638
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
Cons ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
KS ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
ZNF638   10000 perm   2 sec   (4731 perm/sec)   p_kst 5.057000e-01   p_cons 5.639000e-01   p_joint 6.115000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF638.11_6045_10000_0.5057_0.5639_0.6115.png
                gene_name: ZNF638
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 3 percent done.
ZNF658
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
Cons ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
ZNF658   10000 perm   2 sec   (4871 perm/sec)   p_kst 4.753000e-01   p_cons 2.294000e-01   p_joint 4.178000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF658.11_3196_10000_0.4753_0.2294_0.4178.png
                gene_name: ZNF658
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 5 percent done.
ZNF578
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.971706e-02	ci left: 6.254759e-01	ci right 6.444454e-01	k: 6350	n:10000
Cons ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
KS ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
ZNF578   10000 perm   2 sec   (5268 perm/sec)   p_kst 6.476000e-01   p_cons 3.467000e-01   p_joint 6.350000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF578.9_1785_10000_0.6476_0.3467_0.635.png
                gene_name: ZNF578
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 6 percent done.
ZNF623
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
Cons ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
KS ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
ZNF623   10000 perm   2 sec   (5968 perm/sec)   p_kst 1.863000e-01   p_cons 4.394000e-01   p_joint 2.119000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF623.9_1615_10000_0.1863_0.4394_0.2119.png
                gene_name: ZNF623
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 8 percent done.
ZNF665
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
KS ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
ZNF665   10000 perm   2 sec   (5970 perm/sec)   p_kst 9.672000e-01   p_cons 8.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF665.9_2049_10000_0.9672_0.812_1.png
                gene_name: ZNF665
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
ZNF648
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
KS ci ratio: 1.397384e-02	ci left: 8.809390e-01	ci right 8.934345e-01	k: 8873	n:10000
ZNF648   10000 perm   2 sec   (5705 perm/sec)   p_kst 8.873000e-01   p_cons 1.852000e-01   p_joint 4.199000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF648.8_1711_10000_0.8873_0.1852_0.4199.png
                gene_name: ZNF648
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 11 percent done.
ZNF569
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.976194e-02	ci left: 6.247723e-01	ci right 6.437494e-01	k: 6343	n:10000
Cons ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
KS ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
ZNF569   10000 perm   2 sec   (5405 perm/sec)   p_kst 5.333000e-01   p_cons 4.118000e-01   p_joint 6.343000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF569.7_2077_10000_0.5333_0.4118_0.6343.png
                gene_name: ZNF569
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 12 percent done.
ZNF572
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
Cons ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
KS ci ratio: 7.090890e-03	ci left: 9.647821e-01	ci right 9.717416e-01	k: 9684	n:10000
ZNF572   10000 perm   2 sec   (6136 perm/sec)   p_kst 9.684000e-01   p_cons 3.559000e-01   p_joint 7.267000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF572.7_1598_10000_0.9684_0.3559_0.7267.png
                gene_name: ZNF572
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 14 percent done.
ZNF582
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
Cons ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
KS ci ratio: 1.419628e-02	ci left: 8.776639e-01	ci right 8.903114e-01	k: 8841	n:10000
ZNF582   10000 perm   2 sec   (5709 perm/sec)   p_kst 8.841000e-01   p_cons 4.410000e-02   p_joint 2.296000e-01

Joint ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
Cons ci ratio: 1.370436e-01	ci left: 3.660089e-02	ci right 4.203409e-02	k: 785	n:20000
KS ci ratio: 1.011777e-02	ci left: 8.779057e-01	ci right 8.868828e-01	k: 17649	n:20000
ZNF582   20000 perm   4 sec   (5418 perm/sec)   p_kst 8.824500e-01   p_cons 3.925000e-02   p_joint 1.151000e-01

Joint ci ratio: 6.072327e-02	ci left: 1.182508e-01	ci right 1.256893e-01	k: 3658	n:30000
Cons ci ratio: 1.092239e-01	ci left: 3.891389e-02	ci right 4.344218e-02	k: 1234	n:30000
KS ci ratio: 8.285353e-03	ci left: 8.781268e-01	ci right 8.854657e-01	k: 26455	n:30000
ZNF582   30000 perm   6 sec   (5264 perm/sec)   p_kst 8.818333e-01   p_cons 4.113333e-02   p_joint 1.219333e-01

Joint ci ratio: 4.580242e-02	ci left: 1.512184e-01	ci right 1.583318e-01	k: 6190	n:40000
Cons ci ratio: 9.449130e-02	ci left: 3.929756e-02	ci right 4.321939e-02	k: 1649	n:40000
KS ci ratio: 7.184086e-03	ci left: 8.783683e-01	ci right 8.847261e-01	k: 35263	n:40000
ZNF582   40000 perm   8 sec   (5132 perm/sec)   p_kst 8.815750e-01   p_cons 4.122500e-02   p_joint 1.547500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF582.7_1570_40000_0.88157_0.041225_0.15475.png
                gene_name: ZNF582
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
ZNF585A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
ZNF585A   10000 perm   2 sec   (5889 perm/sec)   p_kst 3.325000e-01   p_cons 1.109000e-01   p_joint 1.704000e-01

Joint ci ratio: 5.117161e-02	ci left: 2.210114e-01	ci right 2.326681e-01	k: 4536	n:20000
Cons ci ratio: 7.681736e-02	ci left: 1.107573e-01	ci right 1.196549e-01	k: 2303	n:20000
KS ci ratio: 3.836678e-02	ci left: 3.363196e-01	ci right 3.495261e-01	k: 6858	n:20000
ZNF585A   20000 perm   4 sec   (5349 perm/sec)   p_kst 3.429000e-01   p_cons 1.151500e-01   p_joint 2.268000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF585A.7_2157_20000_0.3429_0.11515_0.2268.png
                gene_name: ZNF585A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
ZNF585B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
KS ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
ZNF585B   10000 perm   2 sec   (4974 perm/sec)   p_kst 9.647000e-01   p_cons 5.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF585B.7_2326_10000_0.9647_0.5909_1.png
                gene_name: ZNF585B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ZNF611
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
Cons ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
KS ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
ZNF611   10000 perm   2 sec   (5913 perm/sec)   p_kst 1.412000e-01   p_cons 7.034000e-01   p_joint 2.574000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF611.7_2130_10000_0.1412_0.7034_0.2574.png
                gene_name: ZNF611
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 20 percent done.
ZNF560
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
KS ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
ZNF560   10000 perm   2 sec   (5384 perm/sec)   p_kst 5.980000e-01   p_cons 5.526000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF560.6_2405_10000_0.598_0.5526_0.741.png
                gene_name: ZNF560
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 22 percent done.
ZNF568
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
Cons ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
KS ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
ZNF568   10000 perm   2 sec   (5293 perm/sec)   p_kst 1.123000e-01   p_cons 3.314000e-01   p_joint 1.779000e-01

Joint ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
Cons ci ratio: 3.828605e-02	ci left: 3.372652e-01	ci right 3.504803e-01	k: 6877	n:20000
KS ci ratio: 7.713935e-02	ci left: 1.099217e-01	ci right 1.187908e-01	k: 2286	n:20000
ZNF568   20000 perm   4 sec   (4745 perm/sec)   p_kst 1.143000e-01   p_cons 3.438500e-01   p_joint 1.835500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF568.6_1955_20000_0.1143_0.34385_0.18355.png
                gene_name: ZNF568
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 23 percent done.
ZNF592
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
ZNF592   10000 perm   2 sec   (4820 perm/sec)   p_kst 4.193000e-01   p_cons 1.131000e-01   p_joint 2.027000e-01

Joint ci ratio: 3.989213e-02	ci left: 3.190567e-01	ci right 3.320941e-01	k: 6511	n:20000
Cons ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
KS ci ratio: 3.224154e-02	ci left: 4.180853e-01	ci right 4.318365e-01	k: 8499	n:20000
ZNF592   20000 perm   4 sec   (4538 perm/sec)   p_kst 4.249500e-01   p_cons 1.142000e-01   p_joint 3.255500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF592.6_3836_20000_0.42495_0.1142_0.32555.png
                gene_name: ZNF592
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 25 percent done.
ZNF595
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
Cons ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
KS ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
ZNF595   10000 perm   2 sec   (6435 perm/sec)   p_kst 3.704000e-01   p_cons 6.763000e-01   p_joint 5.792000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF595.6_1961_10000_0.3704_0.6763_0.5792.png
                gene_name: ZNF595
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 26 percent done.
ZNF607
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
Cons ci ratio: 4.568101e-02	ci left: 4.142874e-01	ci right 4.337569e-01	k: 4240	n:10000
KS ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
ZNF607   10000 perm   2 sec   (5349 perm/sec)   p_kst 1.850000e-01   p_cons 4.240000e-01   p_joint 3.278000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF607.6_2107_10000_0.185_0.424_0.3278.png
                gene_name: ZNF607
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 28 percent done.
ZNF608
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
Cons ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
KS ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
ZNF608   10000 perm   2 sec   (4640 perm/sec)   p_kst 5.765000e-01   p_cons 7.630000e-02   p_joint 1.865000e-01

Joint ci ratio: 4.864524e-02	ci left: 2.391014e-01	ci right 2.510728e-01	k: 4901	n:20000
Cons ci ratio: 9.755352e-02	ci left: 7.104451e-02	ci right 7.837971e-02	k: 1493	n:20000
KS ci ratio: 2.396577e-02	ci left: 5.653080e-01	ci right 5.790710e-01	k: 11444	n:20000
ZNF608   20000 perm   5 sec   (4286 perm/sec)   p_kst 5.722000e-01   p_cons 7.465000e-02   p_joint 2.450500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF608.6_4575_20000_0.5722_0.07465_0.24505.png
                gene_name: ZNF608
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
ZNF622
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
ZNF622   10000 perm   2 sec   (5812 perm/sec)   p_kst 9.841000e-01   p_cons 6.120000e-02   p_joint 2.727000e-01

Joint ci ratio: 4.275254e-02	ci left: 2.895791e-01	ci right 3.022802e-01	k: 5918	n:20000
Cons ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
KS ci ratio: 3.517227e-03	ci left: 9.823746e-01	ci right 9.858826e-01	k: 19684	n:20000
ZNF622   20000 perm   4 sec   (5186 perm/sec)   p_kst 9.842000e-01   p_cons 6.045000e-02   p_joint 2.959000e-01

Joint ci ratio: 3.663711e-02	ci left: 2.711125e-01	ci right 2.812642e-01	k: 8285	n:30000
Cons ci ratio: 9.038324e-02	ci left: 5.632722e-02	ci right 6.169192e-02	k: 1769	n:30000
KS ci ratio: 2.873458e-03	ci left: 9.826896e-01	ci right 9.855489e-01	k: 29525	n:30000
ZNF622   30000 perm   6 sec   (4965 perm/sec)   p_kst 9.841667e-01   p_cons 5.896667e-02   p_joint 2.761667e-01

Outputting figure to mutsig2_images.part000000000198/ZNF622.6_1458_30000_0.98417_0.058967_0.27617.png
                gene_name: ZNF622
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
ZNF652
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
ZNF652   10000 perm   2 sec   (5329 perm/sec)   p_kst 3.802000e-01   p_cons 3.434000e-01   p_joint 6.764000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF652.6_1841_10000_0.3802_0.3434_0.6764.png
                gene_name: ZNF652
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 32 percent done.
ZNF556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
ZNF556   10000 perm   2 sec   (5529 perm/sec)   p_kst 6.592000e-01   p_cons 5.978000e-01   p_joint 8.943000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF556.5_1387_10000_0.6592_0.5978_0.8943.png
                gene_name: ZNF556
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 34 percent done.
ZNF559
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
Cons ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
KS ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
ZNF559   10000 perm   2 sec   (5970 perm/sec)   p_kst 8.111000e-01   p_cons 1.635000e-01   p_joint 4.161000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF559.5_1633_10000_0.8111_0.1635_0.4161.png
                gene_name: ZNF559
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
ZNF571
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
Cons ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
KS ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
ZNF571   10000 perm   2 sec   (5663 perm/sec)   p_kst 3.869000e-01   p_cons 3.360000e-01   p_joint 5.498000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF571.5_1842_10000_0.3869_0.336_0.5498.png
                gene_name: ZNF571
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 37 percent done.
ZNF597
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
Cons ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
KS ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
ZNF597   10000 perm   2 sec   (5783 perm/sec)   p_kst 5.505000e-01   p_cons 6.594000e-01   p_joint 8.464000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF597.5_1287_10000_0.5505_0.6594_0.8464.png
                gene_name: ZNF597
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 38 percent done.
ZNF621
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
Cons ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
KS ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
ZNF621   10000 perm   2 sec   (5758 perm/sec)   p_kst 6.389000e-01   p_cons 7.752000e-01   p_joint 7.821000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF621.5_1336_10000_0.6389_0.7752_0.7821.png
                gene_name: ZNF621
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 40 percent done.
ZNF630
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
ZNF630   10000 perm   1 sec   (6698 perm/sec)   p_kst 5.697000e-01   p_cons 7.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF630.5_1990_10000_0.5697_0.7082_1.png
                gene_name: ZNF630
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ZNF646
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
KS ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
ZNF646   10000 perm   2 sec   (4651 perm/sec)   p_kst 4.799000e-01   p_cons 3.863000e-01   p_joint 4.301000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF646.5_5507_10000_0.4799_0.3863_0.4301.png
                gene_name: ZNF646
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 43 percent done.
ZNF649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.963549e-02	ci left: 4.845536e-01	ci right 5.042496e-01	k: 4944	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
ZNF649   10000 perm   2 sec   (5322 perm/sec)   p_kst 5.506000e-01   p_cons 2.272000e-01   p_joint 4.944000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF649.5_1534_10000_0.5506_0.2272_0.4944.png
                gene_name: ZNF649
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 45 percent done.
ZNF566
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
Cons ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
ZNF566   10000 perm   2 sec   (5805 perm/sec)   p_kst 6.950000e-02   p_cons 4.782000e-01   p_joint 1.589000e-01

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 3.007218e-02	ci left: 4.523748e-01	ci right 4.662370e-01	k: 9186	n:20000
KS ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
ZNF566   20000 perm   4 sec   (5175 perm/sec)   p_kst 6.675000e-02   p_cons 4.593000e-01   p_joint 9.105000e-02

Joint ci ratio: 6.564499e-02	ci left: 1.027352e-01	ci right 1.097412e-01	k: 3186	n:30000
Cons ci ratio: 2.463706e-02	ci left: 4.519834e-01	ci right 4.632915e-01	k: 13729	n:30000
KS ci ratio: 8.504552e-02	ci left: 6.331395e-02	ci right 6.897043e-02	k: 1983	n:30000
ZNF566   30000 perm   6 sec   (5011 perm/sec)   p_kst 6.610000e-02   p_cons 4.576333e-01   p_joint 1.062000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF566.4_1276_30000_0.0661_0.45763_0.1062.png
                gene_name: ZNF566
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 46 percent done.
ZNF570
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
Cons ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
KS ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
ZNF570   10000 perm   2 sec   (6293 perm/sec)   p_kst 7.549000e-01   p_cons 2.006000e-01   p_joint 6.512000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF570.4_1627_10000_0.7549_0.2006_0.6512.png
                gene_name: ZNF570
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 48 percent done.
ZNF577
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
Cons ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
KS ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
ZNF577   10000 perm   2 sec   (6614 perm/sec)   p_kst 8.217000e-01   p_cons 2.459000e-01   p_joint 5.732000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF577.4_1474_10000_0.8217_0.2459_0.5732.png
                gene_name: ZNF577
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 49 percent done.
ZNF587
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
Cons ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
KS ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
ZNF587   10000 perm   2 sec   (6014 perm/sec)   p_kst 5.884000e-01   p_cons 5.902000e-01   p_joint 8.633000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF587.3_1740_10000_0.5884_0.5902_0.8633.png
                gene_name: ZNF587
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 51 percent done.
ZNF606
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
KS ci ratio: 5.569174e-02	ci left: 3.219758e-01	ci right 3.405226e-01	k: 3312	n:10000
ZNF606   10000 perm   2 sec   (5971 perm/sec)   p_kst 3.312000e-01   p_cons 2.655000e-01   p_joint 3.952000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF606.4_2403_10000_0.3312_0.2655_0.3952.png
                gene_name: ZNF606
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 52 percent done.
ZNF616
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.437554e-03	ci left: 9.515867e-01	ci right 9.597452e-01	k: 9558	n:10000
KS ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
ZNF616   10000 perm   2 sec   (5046 perm/sec)   p_kst 8.699000e-01   p_cons 9.558000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF616.4_2358_10000_0.8699_0.9558_1.png
                gene_name: ZNF616
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
ZNF624
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
Cons ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
KS ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
ZNF624   10000 perm   2 sec   (5693 perm/sec)   p_kst 3.322000e-01   p_cons 7.052000e-01   p_joint 6.833000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF624.4_2618_10000_0.3322_0.7052_0.6833.png
                gene_name: ZNF624
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 55 percent done.
ZNF629
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
ZNF629   10000 perm   2 sec   (6110 perm/sec)   p_kst 2.590000e-02   p_cons 1.444000e-01   p_joint 4.190000e-02

Joint ci ratio: 1.066253e-01	ci left: 5.991522e-02	ci right 6.671242e-02	k: 1265	n:20000
Cons ci ratio: 6.591775e-02	ci left: 1.452747e-01	ci right 1.552272e-01	k: 3004	n:20000
KS ci ratio: 1.665517e-01	ci left: 2.470171e-02	ci right 2.923722e-02	k: 538	n:20000
ZNF629   20000 perm   4 sec   (5431 perm/sec)   p_kst 2.690000e-02   p_cons 1.502000e-01   p_joint 6.325000e-02

Joint ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
Cons ci ratio: 5.548727e-02	ci left: 1.386613e-01	ci right 1.466080e-01	k: 4278	n:30000
KS ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
ZNF629   30000 perm   6 sec   (5205 perm/sec)   p_kst 2.786667e-02   p_cons 1.426000e-01   p_joint 6.423333e-02

Joint ci ratio: 7.771608e-02	ci left: 5.747128e-02	ci right 6.214288e-02	k: 2391	n:40000
Cons ci ratio: 4.775292e-02	ci left: 1.407213e-01	ci right 1.476304e-01	k: 5766	n:40000
KS ci ratio: 1.176031e-01	ci left: 2.543352e-02	ci right 2.863564e-02	k: 1080	n:40000
ZNF629   40000 perm   8 sec   (5044 perm/sec)   p_kst 2.700000e-02   p_cons 1.441500e-01   p_joint 5.977500e-02

Joint ci ratio: 7.857187e-02	ci left: 4.555377e-02	ci right 4.929900e-02	k: 2370	n:50000
Cons ci ratio: 4.125036e-02	ci left: 1.498152e-01	ci right 1.561452e-01	k: 7648	n:50000
KS ci ratio: 1.052778e-01	ci left: 2.555784e-02	ci right 2.841743e-02	k: 1348	n:50000
ZNF629   50000 perm   10 sec   (4930 perm/sec)   p_kst 2.696000e-02   p_cons 1.529600e-01   p_joint 4.740000e-02

Joint ci ratio: 7.025077e-02	ci left: 4.759761e-02	ci right 5.107948e-02	k: 2959	n:60000
Cons ci ratio: 4.013155e-02	ci left: 1.344397e-01	ci right 1.399621e-01	k: 8231	n:60000
KS ci ratio: 9.585599e-02	ci left: 2.581533e-02	ci right 2.843068e-02	k: 1626	n:60000
ZNF629   60000 perm   12 sec   (4831 perm/sec)   p_kst 2.710000e-02   p_cons 1.371833e-01   p_joint 4.931667e-02

Outputting figure to mutsig2_images.part000000000198/ZNF629.4_2618_60000_0.0271_0.13718_0.049317.png
                gene_name: ZNF629
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 57 percent done.
ZNF660
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.122527e-03	ci left: 9.441937e-01	ci right 9.529427e-01	k: 9487	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
ZNF660   10000 perm   1 sec   (6714 perm/sec)   p_kst 8.530000e-01   p_cons 9.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF660.4_1000_10000_0.853_0.9487_1.png
                gene_name: ZNF660
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ZNF662
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
ZNF662   10000 perm   2 sec   (6544 perm/sec)   p_kst 8.061000e-01   p_cons 3.673000e-01   p_joint 8.539000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF662.4_1484_10000_0.8061_0.3673_0.8539.png
                gene_name: ZNF662
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 60 percent done.
ZNF550
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
KS ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
ZNF550   10000 perm   2 sec   (6047 perm/sec)   p_kst 4.629000e-01   p_cons 1.826000e-01   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF550.3_1154_10000_0.4629_0.1826_0.2739.png
                gene_name: ZNF550
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
ZNF567
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
Cons ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
ZNF567   10000 perm   2 sec   (5852 perm/sec)   p_kst 2.689000e-01   p_cons 5.138000e-01   p_joint 4.584000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF567.3_1863_10000_0.2689_0.5138_0.4584.png
                gene_name: ZNF567
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 63 percent done.
ZNF586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
Cons ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KS ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
ZNF586   10000 perm   1 sec   (6789 perm/sec)   p_kst 1.471000e-01   p_cons 3.413000e-01   p_joint 1.547000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF586.3_1221_10000_0.1471_0.3413_0.1547.png
                gene_name: ZNF586
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 65 percent done.
ZNF594
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
Cons ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
KS ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
ZNF594   10000 perm   2 sec   (6447 perm/sec)   p_kst 2.367000e-01   p_cons 1.113000e-01   p_joint 1.299000e-01

Joint ci ratio: 6.391496e-02	ci left: 1.532167e-01	ci right 1.633828e-01	k: 3165	n:20000
Cons ci ratio: 8.233326e-02	ci left: 9.759325e-02	ci right 1.060229e-01	k: 2035	n:20000
KS ci ratio: 4.973419e-02	ci left: 2.310705e-01	ci right 2.429060e-01	k: 4739	n:20000
ZNF594   20000 perm   3 sec   (5746 perm/sec)   p_kst 2.369500e-01   p_cons 1.017500e-01   p_joint 1.582500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF594.3_2428_20000_0.23695_0.10175_0.15825.png
                gene_name: ZNF594
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 66 percent done.
ZNF599
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
Cons ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
KS ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
ZNF599   10000 perm   2 sec   (6010 perm/sec)   p_kst 1.789000e-01   p_cons 6.423000e-01   p_joint 3.763000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF599.3_1783_10000_0.1789_0.6423_0.3763.png
                gene_name: ZNF599
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 68 percent done.
ZNF609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.148575e-02	ci left: 5.981504e-01	ci right 6.173868e-01	k: 6078	n:10000
Cons ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
KS ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
ZNF609   10000 perm   2 sec   (6000 perm/sec)   p_kst 5.206000e-01   p_cons 6.963000e-01   p_joint 6.078000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF609.3_4268_10000_0.5206_0.6963_0.6078.png
                gene_name: ZNF609
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 69 percent done.
ZNF613
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
Cons ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
KS ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
ZNF613   10000 perm   1 sec   (6944 perm/sec)   p_kst 3.574000e-01   p_cons 9.529000e-01   p_joint 6.714000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF613.3_1870_10000_0.3574_0.9529_0.6714.png
                gene_name: ZNF613
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 71 percent done.
ZNF615
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
Cons ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
ZNF615   10000 perm   2 sec   (6566 perm/sec)   p_kst 3.340000e-02   p_cons 4.798000e-01   p_joint 1.060000e-01

Joint ci ratio: 1.016175e-01	ci left: 6.572047e-02	ci right 7.280538e-02	k: 1384	n:20000
Cons ci ratio: 2.838697e-02	ci left: 4.810996e-01	ci right 4.950039e-01	k: 9761	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
ZNF615   20000 perm   3 sec   (5833 perm/sec)   p_kst 3.195000e-02   p_cons 4.880500e-01   p_joint 6.920000e-02

Joint ci ratio: 8.176170e-02	ci left: 6.824959e-02	ci right 7.410046e-02	k: 2134	n:30000
Cons ci ratio: 2.337491e-02	ci left: 4.781635e-01	ci right 4.895063e-01	k: 14515	n:30000
KS ci ratio: 1.197251e-01	ci left: 3.243089e-02	ci right 3.659322e-02	k: 1034	n:30000
ZNF615   30000 perm   5 sec   (5537 perm/sec)   p_kst 3.446667e-02   p_cons 4.838333e-01   p_joint 7.113333e-02

Joint ci ratio: 7.012954e-02	ci left: 6.990359e-02	ci right 7.500869e-02	k: 2897	n:40000
Cons ci ratio: 2.031594e-02	ci left: 4.771422e-01	ci right 4.869604e-01	k: 19282	n:40000
KS ci ratio: 1.043926e-01	ci left: 3.226975e-02	ci right 3.584831e-02	k: 1361	n:40000
ZNF615   40000 perm   7 sec   (5362 perm/sec)   p_kst 3.402500e-02   p_cons 4.820500e-01   p_joint 7.242500e-02

Joint ci ratio: 6.680784e-02	ci left: 6.226379e-02	ci right 6.658695e-02	k: 3220	n:50000
Cons ci ratio: 1.821828e-02	ci left: 4.763719e-01	ci right 4.851504e-01	k: 24038	n:50000
KS ci ratio: 9.375733e-02	ci left: 3.219402e-02	ci right 3.538041e-02	k: 1688	n:50000
ZNF615   50000 perm   10 sec   (5218 perm/sec)   p_kst 3.376000e-02   p_cons 4.807600e-01   p_joint 6.440000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF615.3_2212_50000_0.03376_0.48076_0.0644.png
                gene_name: ZNF615
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 72 percent done.
ZNF618
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
KS ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
ZNF618   10000 perm   2 sec   (5516 perm/sec)   p_kst 8.762000e-01   p_cons 5.388000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF618.3_2642_10000_0.8762_0.5388_1.png
                gene_name: ZNF618
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ZNF620
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
ZNF620   10000 perm   2 sec   (6158 perm/sec)   p_kst 8.899000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF620.3_1285_10000_0.8899_0.7722_1.png
                gene_name: ZNF620
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ZNF551
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
Cons ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
KS ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
ZNF551   10000 perm   2 sec   (6039 perm/sec)   p_kst 1.103000e-01   p_cons 2.396000e-01   p_joint 1.148000e-01

Joint ci ratio: 6.237685e-02	ci left: 1.597317e-01	ci right 1.700660e-01	k: 3297	n:20000
Cons ci ratio: 4.976859e-02	ci left: 2.308227e-01	ci right 2.426539e-01	k: 4734	n:20000
KS ci ratio: 7.886285e-02	ci left: 1.055973e-01	ci right 1.143165e-01	k: 2198	n:20000
ZNF551   20000 perm   4 sec   (5389 perm/sec)   p_kst 1.099000e-01   p_cons 2.367000e-01   p_joint 1.648500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF551.2_1977_20000_0.1099_0.2367_0.16485.png
                gene_name: ZNF551
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 77 percent done.
ZNF554
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
Cons ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
KS ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
ZNF554   10000 perm   2 sec   (6282 perm/sec)   p_kst 6.724000e-01   p_cons 3.609000e-01   p_joint 4.733000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF554.2_1637_10000_0.6724_0.3609_0.4733.png
                gene_name: ZNF554
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 78 percent done.
ZNF558
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.755077e-02	ci left: 1.955478e-01	ci right 2.114253e-01	k: 2034	n:10000
Cons ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
KS ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
ZNF558   10000 perm   1 sec   (7467 perm/sec)   p_kst 2.011000e-01   p_cons 6.520000e-02   p_joint 2.034000e-01

Joint ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
Cons ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
KS ci ratio: 5.536728e-02	ci left: 1.948216e-01	ci right 2.059656e-01	k: 4007	n:20000
ZNF558   20000 perm   3 sec   (6574 perm/sec)   p_kst 2.003500e-01   p_cons 7.075000e-02   p_joint 1.138500e-01

Joint ci ratio: 6.860925e-02	ci left: 9.475646e-02	ci right 1.015216e-01	k: 2943	n:30000
Cons ci ratio: 8.334871e-02	ci left: 6.579756e-02	ci right 7.155298e-02	k: 2059	n:30000
KS ci ratio: 4.507148e-02	ci left: 1.968081e-01	ci right 2.059164e-01	k: 6040	n:30000
ZNF558   30000 perm   5 sec   (6222 perm/sec)   p_kst 2.013333e-01   p_cons 6.863333e-02   p_joint 9.810000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF558.2_1233_30000_0.20133_0.068633_0.0981.png
                gene_name: ZNF558
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 80 percent done.
ZNF561
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
Cons ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
KS ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
ZNF561   10000 perm   2 sec   (6308 perm/sec)   p_kst 4.608000e-01   p_cons 3.101000e-01   p_joint 3.184000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF561.2_1481_10000_0.4608_0.3101_0.3184.png
                gene_name: ZNF561
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 82 percent done.
ZNF573
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.545165e-03	ci left: 9.944420e-01	ci right 9.970562e-01	k: 9959	n:10000
KS ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
ZNF573   10000 perm   1 sec   (7169 perm/sec)   p_kst 4.858000e-01   p_cons 9.959000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF573.2_2139_10000_0.4858_0.9959_1.png
                gene_name: ZNF573
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNF574
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
KS ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
ZNF574   10000 perm   2 sec   (5902 perm/sec)   p_kst 5.615000e-01   p_cons 7.507000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF574.2_2695_10000_0.5615_0.7507_1.png
                gene_name: ZNF574
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ZNF583
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
KS ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
ZNF583   10000 perm   2 sec   (6209 perm/sec)   p_kst 9.319000e-01   p_cons 7.953000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF583.2_1726_10000_0.9319_0.7953_1.png
                gene_name: ZNF583
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZNF596
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
Cons ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
KS ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
ZNF596   10000 perm   2 sec   (6333 perm/sec)   p_kst 1.263000e-01   p_cons 5.813000e-01   p_joint 4.684000e-01

Joint ci ratio: 1.826445e-02	ci left: 6.908292e-01	ci right 7.036135e-01	k: 13945	n:20000
Cons ci ratio: 2.358127e-02	ci left: 5.732237e-01	ci right 5.869530e-01	k: 11602	n:20000
KS ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
ZNF596   20000 perm   4 sec   (5616 perm/sec)   p_kst 1.268500e-01   p_cons 5.801000e-01   p_joint 6.972500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF596.2_1535_20000_0.12685_0.5801_0.69725.png
                gene_name: ZNF596
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 88 percent done.
ZNF598
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
KS ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
ZNF598   10000 perm   2 sec   (6003 perm/sec)   p_kst 5.128000e-01   p_cons 7.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF598.2_2765_10000_0.5128_0.758_1.png
                gene_name: ZNF598
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ZNF610
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
Cons ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
KS ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
ZNF610   10000 perm   2 sec   (6425 perm/sec)   p_kst 1.022000e-01   p_cons 7.739000e-01   p_joint 4.436000e-01

Joint ci ratio: 2.922347e-02	ci left: 4.666095e-01	ci right 4.804982e-01	k: 9471	n:20000
Cons ci ratio: 1.525609e-02	ci left: 7.615819e-01	ci right 7.733402e-01	k: 15350	n:20000
KS ci ratio: 8.317725e-02	ci left: 9.577751e-02	ci right 1.041392e-01	k: 1998	n:20000
ZNF610   20000 perm   4 sec   (5706 perm/sec)   p_kst 9.990000e-02   p_cons 7.675000e-01   p_joint 4.735500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF610.2_1405_20000_0.0999_0.7675_0.47355.png
                gene_name: ZNF610
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 91 percent done.
ZNF614
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
KS ci ratio: 2.087943e-02	ci left: 7.707371e-01	ci right 7.871001e-01	k: 7790	n:10000
ZNF614   10000 perm   2 sec   (6158 perm/sec)   p_kst 7.790000e-01   p_cons 8.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF614.2_1774_10000_0.779_0.8283_1.png
                gene_name: ZNF614
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ZNF626
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
Cons ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
KS ci ratio: 7.525856e-02	ci left: 2.053056e-01	ci right 2.214617e-01	k: 2133	n:10000
ZNF626   10000 perm   1 sec   (7450 perm/sec)   p_kst 2.133000e-01   p_cons 5.526000e-01   p_joint 4.597000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF626.2_1660_10000_0.2133_0.5526_0.4597.png
                gene_name: ZNF626
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 94 percent done.
ZNF643
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
KS ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
ZNF643   10000 perm   1 sec   (7269 perm/sec)   p_kst 6.042000e-01   p_cons 6.750000e-02   p_joint 2.598000e-01

Joint ci ratio: 4.682935e-02	ci left: 2.533358e-01	ci right 2.655342e-01	k: 5188	n:20000
Cons ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
KS ci ratio: 2.258615e-02	ci left: 5.941239e-01	ci right 6.077467e-01	k: 12019	n:20000
ZNF643   20000 perm   3 sec   (6435 perm/sec)   p_kst 6.009500e-01   p_cons 6.775000e-02   p_joint 2.594000e-01

Joint ci ratio: 5.425104e-02	ci left: 1.441970e-01	ci right 1.522712e-01	k: 4446	n:30000
Cons ci ratio: 8.270391e-02	ci left: 6.677824e-02	ci right 7.257210e-02	k: 2089	n:30000
KS ci ratio: 1.833118e-02	ci left: 5.982722e-01	ci right 6.093743e-01	k: 18115	n:30000
ZNF643   30000 perm   5 sec   (6095 perm/sec)   p_kst 6.038333e-01   p_cons 6.963333e-02   p_joint 1.482000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF643.2_1625_30000_0.60383_0.069633_0.1482.png
                gene_name: ZNF643
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 95 percent done.
ZNF653
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
Cons ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
ZNF653   10000 perm   2 sec   (6355 perm/sec)   p_kst 2.988000e-01   p_cons 1.175000e-01   p_joint 1.693000e-01

Joint ci ratio: 6.471824e-02	ci left: 1.499604e-01	ci right 1.600401e-01	k: 3099	n:20000
Cons ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
KS ci ratio: 4.292242e-02	ci left: 2.879396e-01	ci right 3.006202e-01	k: 5885	n:20000
ZNF653   20000 perm   3 sec   (5945 perm/sec)   p_kst 2.942500e-01   p_cons 1.259000e-01   p_joint 1.549500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF653.2_1884_20000_0.29425_0.1259_0.15495.png
                gene_name: ZNF653
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 97 percent done.
ZNF654
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
KS ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
ZNF654   10000 perm   2 sec   (6244 perm/sec)   p_kst 7.420000e-02   p_cons 3.110000e-02   p_joint 1.831000e-01

Joint ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
Cons ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
KS ci ratio: 9.826617e-02	ci left: 7.006718e-02	ci right 7.735734e-02	k: 1473	n:20000
ZNF654   20000 perm   4 sec   (5446 perm/sec)   p_kst 7.365000e-02   p_cons 2.955000e-02   p_joint 5.490000e-02

Joint ci ratio: 1.008634e-01	ci left: 4.551066e-02	ci right 5.037737e-02	k: 1437	n:30000
Cons ci ratio: 1.365551e-01	ci left: 2.490510e-02	ci right 2.858732e-02	k: 801	n:30000
KS ci ratio: 8.092816e-02	ci left: 6.959047e-02	ci right 7.549263e-02	k: 2175	n:30000
ZNF654   30000 perm   6 sec   (5424 perm/sec)   p_kst 7.250000e-02   p_cons 2.670000e-02   p_joint 4.790000e-02

Joint ci ratio: 9.818026e-02	ci left: 3.644030e-02	ci right 4.022710e-02	k: 1532	n:40000
Cons ci ratio: 1.182796e-01	ci left: 2.514215e-02	ci right 2.832706e-02	k: 1068	n:40000
KS ci ratio: 7.045772e-02	ci left: 6.928876e-02	ci right 7.437361e-02	k: 2872	n:40000
ZNF654   40000 perm   7 sec   (5368 perm/sec)   p_kst 7.180000e-02   p_cons 2.670000e-02   p_joint 3.830000e-02

Joint ci ratio: 8.322979e-02	ci left: 4.070922e-02	ci right 4.426414e-02	k: 2123	n:50000
Cons ci ratio: 1.060069e-01	ci left: 2.520711e-02	ci right 2.804821e-02	k: 1330	n:50000
KS ci ratio: 6.269325e-02	ci left: 7.024192e-02	ci right 7.480786e-02	k: 3625	n:50000
ZNF654   50000 perm   9 sec   (5296 perm/sec)   p_kst 7.250000e-02   p_cons 2.660000e-02   p_joint 4.246000e-02

Joint ci ratio: 5.810082e-02	ci left: 6.846418e-02	ci right 7.257747e-02	k: 4230	n:60000
Cons ci ratio: 9.332194e-02	ci left: 2.723195e-02	ci right 2.991391e-02	k: 1713	n:60000
KS ci ratio: 5.728204e-02	ci left: 7.032235e-02	ci right 7.448579e-02	k: 4343	n:60000
ZNF654   60000 perm   11 sec   (5217 perm/sec)   p_kst 7.238333e-02   p_cons 2.855000e-02   p_joint 7.050000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF654.2_1754_60000_0.072383_0.02855_0.0705.png
                gene_name: ZNF654
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 98 percent done.
ZNF655
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
Cons ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
KS ci ratio: 2.469315e-02	ci left: 7.069489e-01	ci right 7.247252e-01	k: 7159	n:10000
ZNF655   10000 perm   1 sec   (7182 perm/sec)   p_kst 7.159000e-01   p_cons 5.902000e-01   p_joint 9.854000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF655.2_2015_10000_0.7159_0.5902_0.9854.png
                gene_name: ZNF655
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000198
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 198 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 4422731: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000199> was used as the working directory.
Started at Wed Oct 24 18:12:39 2012
Results reported at Wed Oct 24 21:18:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000199.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000199.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 199  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000199.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11323.39 sec.
    Max Memory :      9391 MB
    Max Swap   :     11902 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
199
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 199
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 199: processing genes 17914 - 18004
Calculating significance of each gene.
Using projection method.
17914	ZNF667	5.213900e-01
17915	ZNF668	1
17916	ZNF669	7.049122e-02
17917	ZNF670	4.260056e-01
17918	ZNF671	2.040958e-01
17919	ZNF672	1
17920	ZNF673	6.233420e-01
17921	ZNF674	8.738209e-01
17922	ZNF675	5.682741e-01
17923	ZNF676	6.199567e-09
17924	ZNF677	3.789090e-01
17925	ZNF678	1.481348e-01
17926	ZNF679	4.575851e-01
17927	ZNF680	1.029121e-01
17928	ZNF681	9.157309e-02
17929	ZNF682	6.936457e-01
17930	ZNF683	6.264915e-01
17931	ZNF684	6.514056e-01
17932	ZNF687	9.977834e-01
17933	ZNF688	1
17934	ZNF689	9.593789e-01
17935	ZNF69	2.107974e-01
17936	ZNF691	3.572984e-01
17937	ZNF692	3.502623e-01
17938	ZNF695	8.136173e-01
17939	ZNF696	1
17940	ZNF697	1.531910e-01
17941	ZNF699	6.580509e-01
17942	ZNF7	1
17943	ZNF70	4.471660e-01
17944	ZNF700	5.421456e-01
17945	ZNF701	6.795886e-01
17946	ZNF704	1
17947	ZNF705A	6.390032e-01
17948	ZNF705D	2.577991e-01
17949	ZNF706	3.567767e-01
17950	ZNF707	1
17951	ZNF708	6.965945e-01
17952	ZNF709	1
17953	ZNF71	1.358129e-01
17954	ZNF710	9.744783e-01
17955	ZNF711	4.799322e-03
17956	ZNF713	2.530675e-03
17957	ZNF714	7.512213e-01
17958	ZNF716	1.148882e-01
17959	ZNF718	4.407446e-01
17960	ZNF720	1.358848e-01
17961	ZNF721	1
17962	ZNF727	6.903290e-02
17963	ZNF732	5.000882e-01
17964	ZNF735	6.485844e-03
17965	ZNF736	1
17966	ZNF737	6.420358e-01
17967	ZNF74	1
17968	ZNF740	1
17969	ZNF746	5.115379e-01
17970	ZNF747	2.980348e-01
17971	ZNF749	1
17972	ZNF750	1
17973	ZNF75A	7.935451e-01
17974	ZNF75D	1.165204e-01
17975	ZNF76	9.585666e-01
17976	ZNF761	8.682592e-01
17977	ZNF763	3.589496e-01
17978	ZNF764	1
17979	ZNF765	4.825448e-01
17980	ZNF766	7.774883e-01
17981	ZNF768	9.341163e-01
17982	ZNF77	9.019235e-01
17983	ZNF770	1
17984	ZNF772	1
17985	ZNF773	8.190016e-01
17986	ZNF774	3.993860e-01
17987	ZNF775	4.868099e-01
17988	ZNF776	8.433580e-01
17989	ZNF777	1
17990	ZNF778	9.517028e-01
17991	ZNF780A	1.081474e-02
17992	ZNF780B	9.851823e-01
17993	ZNF781	4.355644e-02
17994	ZNF782	9.004640e-01
17995	ZNF784	1
17996	ZNF785	1
17997	ZNF786	8.645461e-01
17998	ZNF787	1
17999	ZNF789	7.707607e-01
18000/18094 18000	ZNF79	6.978596e-01
18001	ZNF790	7.671949e-01
18002	ZNF791	1
18003	ZNF792	6.201724e-01
18004	ZNF793	6.169137e-01
Done

Running MutSig 2:
Scatter job 199: processing genes 17914 - 18004
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF676
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
ZNF676   10000 perm   2 sec   (5107 perm/sec)   p_kst 4.900000e-03   p_cons 2.201000e-01   p_joint 1.710000e-02

Joint ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
Cons ci ratio: 5.313732e-02	ci left: 2.081844e-01	ci right 2.195989e-01	k: 4277	n:20000
KS ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
ZNF676   20000 perm   6 sec   (3213 perm/sec)   p_kst 4.550000e-03   p_cons 2.138500e-01   p_joint 1.345000e-02

Joint ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
Cons ci ratio: 4.471493e-02	ci left: 1.993531e-01	ci right 2.085043e-01	k: 6117	n:30000
KS ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
ZNF676   30000 perm   9 sec   (3477 perm/sec)   p_kst 4.100000e-03   p_cons 2.039000e-01   p_joint 2.583333e-02

Joint ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
Cons ci ratio: 3.876713e-02	ci left: 1.996133e-01	ci right 2.075297e-01	k: 8142	n:40000
KS ci ratio: 3.054686e-01	ci left: 3.474429e-03	ci right 4.749221e-03	k: 163	n:40000
ZNF676   40000 perm   11 sec   (3611 perm/sec)   p_kst 4.075000e-03   p_cons 2.035500e-01   p_joint 1.017500e-02

Joint ci ratio: 1.558154e-01	ci left: 1.152531e-02	ci right 1.349189e-02	k: 624	n:50000
Cons ci ratio: 3.458432e-02	ci left: 2.008725e-01	ci right 2.079618e-01	k: 10220	n:50000
KS ci ratio: 2.732201e-01	ci left: 3.540222e-03	ci right 4.678540e-03	k: 204	n:50000
ZNF676   50000 perm   14 sec   (3677 perm/sec)   p_kst 4.080000e-03   p_cons 2.044000e-01   p_joint 1.248000e-02

Joint ci ratio: 1.412888e-01	ci left: 1.177106e-02	ci right 1.357653e-02	k: 759	n:60000
Cons ci ratio: 3.152453e-02	ci left: 2.016598e-01	ci right 2.081354e-01	k: 12293	n:60000
KS ci ratio: 2.499257e-01	ci left: 3.573225e-03	ci right 4.608982e-03	k: 244	n:60000
ZNF676   60000 perm   16 sec   (3700 perm/sec)   p_kst 4.066667e-03   p_cons 2.048833e-01   p_joint 1.265000e-02

Joint ci ratio: 1.536360e-01	ci left: 8.505988e-03	ci right 9.935138e-03	k: 644	n:70000
Cons ci ratio: 2.916688e-02	ci left: 2.021140e-01	ci right 2.081105e-01	k: 14357	n:70000
KS ci ratio: 2.289201e-01	ci left: 3.694010e-03	ci right 4.662087e-03	k: 291	n:70000
ZNF676   70000 perm   19 sec   (3701 perm/sec)   p_kst 4.157143e-03   p_cons 2.051000e-01   p_joint 9.200000e-03

Joint ci ratio: 1.429465e-01	ci left: 8.646448e-03	ci right 9.989498e-03	k: 744	n:80000
Cons ci ratio: 2.561430e-02	ci left: 2.235535e-01	ci right 2.293664e-01	k: 18116	n:80000
KS ci ratio: 2.150152e-01	ci left: 3.692676e-03	ci right 4.593868e-03	k: 330	n:80000
ZNF676   80000 perm   22 sec   (3690 perm/sec)   p_kst 4.125000e-03   p_cons 2.264500e-01   p_joint 9.300000e-03

Joint ci ratio: 1.628089e-01	ci left: 5.878761e-03	ci right 6.931211e-03	k: 575	n:90000
Cons ci ratio: 2.410478e-02	ci left: 2.243661e-01	ci right 2.298515e-01	k: 20439	n:90000
KS ci ratio: 2.030952e-01	ci left: 3.703572e-03	ci right 4.551102e-03	k: 370	n:90000
ZNF676   90000 perm   25 sec   (3668 perm/sec)   p_kst 4.111111e-03   p_cons 2.271000e-01   p_joint 6.388889e-03

Joint ci ratio: 1.573249e-01	ci left: 5.684418e-03	ci right 6.664557e-03	k: 616	n:100000
Cons ci ratio: 2.285161e-02	ci left: 2.247552e-01	ci right 2.299606e-01	k: 22735	n:100000
KS ci ratio: 1.927253e-01	ci left: 3.722912e-03	ci right 4.526269e-03	k: 411	n:100000
ZNF676   100000 perm   27 sec   (3642 perm/sec)   p_kst 4.110000e-03   p_cons 2.273500e-01   p_joint 6.160000e-03

Joint ci ratio: 1.103314e-01	ci left: 1.071910e-02	ci right 1.197958e-02	k: 1247	n:110000
Cons ci ratio: 2.275650e-02	ci left: 2.100222e-01	ci right 2.148657e-01	k: 23368	n:110000
KS ci ratio: 1.852399e-01	ci left: 3.678929e-03	ci right 4.438496e-03	k: 445	n:110000
ZNF676   110000 perm   30 sec   (3613 perm/sec)   p_kst 4.045455e-03   p_cons 2.124364e-01   p_joint 1.133636e-02

Joint ci ratio: 1.233810e-01	ci left: 7.826737e-03	ci right 8.863901e-03	k: 1000	n:120000
Cons ci ratio: 2.143183e-02	ci left: 2.156666e-01	ci right 2.203471e-01	k: 26160	n:120000
KS ci ratio: 1.761842e-01	ci left: 3.746321e-03	ci right 4.477964e-03	k: 492	n:120000
ZNF676   120000 perm   34 sec   (3579 perm/sec)   p_kst 4.100000e-03   p_cons 2.180000e-01   p_joint 8.333333e-03

Joint ci ratio: 1.183985e-01	ci left: 7.866227e-03	ci right 8.863582e-03	k: 1086	n:130000
Cons ci ratio: 2.058550e-02	ci left: 2.158500e-01	ci right 2.203472e-01	k: 28352	n:130000
KS ci ratio: 1.684953e-01	ci left: 3.796739e-03	ci right 4.502584e-03	k: 538	n:130000
ZNF676   130000 perm   37 sec   (3545 perm/sec)   p_kst 4.138462e-03   p_cons 2.180923e-01   p_joint 8.353846e-03

Joint ci ratio: 1.328711e-01	ci left: 5.767877e-03	ci right 6.595633e-03	k: 864	n:140000
Cons ci ratio: 1.983669e-02	ci left: 2.159320e-01	ci right 2.202654e-01	k: 30533	n:140000
KS ci ratio: 1.628545e-01	ci left: 3.785718e-03	ci right 4.463645e-03	k: 576	n:140000
ZNF676   140000 perm   40 sec   (3510 perm/sec)   p_kst 4.114286e-03   p_cons 2.180929e-01   p_joint 6.171429e-03

Joint ci ratio: 1.023027e-01	ci left: 9.197178e-03	ci right 1.019525e-02	k: 1453	n:150000
Cons ci ratio: 1.915096e-02	ci left: 2.162382e-01	ci right 2.204260e-01	k: 32749	n:150000
KS ci ratio: 1.557236e-01	ci left: 3.879006e-03	ci right 4.540384e-03	k: 630	n:150000
ZNF676   150000 perm   43 sec   (3474 perm/sec)   p_kst 4.200000e-03   p_cons 2.183267e-01   p_joint 9.686667e-03

Joint ci ratio: 1.059608e-01	ci left: 8.031630e-03	ci right 8.936316e-03	k: 1356	n:160000
Cons ci ratio: 1.854397e-02	ci left: 2.162841e-01	ci right 2.203386e-01	k: 34929	n:160000
KS ci ratio: 1.508989e-01	ci left: 3.882989e-03	ci right 4.522682e-03	k: 671	n:160000
ZNF676   160000 perm   47 sec   (3435 perm/sec)   p_kst 4.193750e-03   p_cons 2.183063e-01   p_joint 8.475000e-03

Joint ci ratio: 1.049020e-01	ci left: 7.719478e-03	ci right 8.579775e-03	k: 1384	n:170000
Cons ci ratio: 1.798662e-02	ci left: 2.164144e-01	ci right 2.203481e-01	k: 37124	n:170000
KS ci ratio: 1.461880e-01	ci left: 3.903786e-03	ci right 4.525074e-03	k: 715	n:170000
ZNF676   170000 perm   50 sec   (3398 perm/sec)   p_kst 4.205882e-03   p_cons 2.183765e-01   p_joint 8.141176e-03

Joint ci ratio: 1.034678e-01	ci left: 7.501595e-03	ci right 8.325483e-03	k: 1423	n:180000
Cons ci ratio: 1.749546e-02	ci left: 2.161664e-01	ci right 2.199872e-01	k: 39253	n:180000
KS ci ratio: 1.400537e-01	ci left: 4.029755e-03	ci right 4.641933e-03	k: 779	n:180000
ZNF676   180000 perm   54 sec   (3361 perm/sec)   p_kst 4.327778e-03   p_cons 2.180722e-01   p_joint 7.905556e-03

Joint ci ratio: 1.051387e-01	ci left: 6.881120e-03	ci right 7.649818e-03	k: 1379	n:190000
Cons ci ratio: 1.703298e-02	ci left: 2.161347e-01	ci right 2.198529e-01	k: 41418	n:190000
KS ci ratio: 1.356033e-01	ci left: 4.081918e-03	ci right 4.680727e-03	k: 831	n:190000
ZNF676   190000 perm   57 sec   (3323 perm/sec)   p_kst 4.373684e-03   p_cons 2.179895e-01   p_joint 7.257895e-03

Joint ci ratio: 1.028923e-01	ci left: 6.834121e-03	ci right 7.580270e-03	k: 1440	n:200000
Cons ci ratio: 1.658952e-02	ci left: 2.164313e-01	ci right 2.200568e-01	k: 43648	n:200000
KS ci ratio: 1.321538e-01	ci left: 4.090455e-03	ci right 4.674053e-03	k: 875	n:200000
ZNF676   200000 perm   61 sec   (3286 perm/sec)   p_kst 4.375000e-03   p_cons 2.182400e-01   p_joint 7.200000e-03

Joint ci ratio: 1.054835e-01	ci left: 6.188567e-03	ci right 6.882303e-03	k: 1371	n:210000
Cons ci ratio: 1.619343e-02	ci left: 2.163970e-01	ci right 2.199346e-01	k: 45814	n:210000
KS ci ratio: 1.294504e-01	ci left: 4.066094e-03	ci right 4.633436e-03	k: 912	n:210000
ZNF676   210000 perm   65 sec   (3250 perm/sec)   p_kst 4.342857e-03   p_cons 2.181619e-01   p_joint 6.528571e-03

Joint ci ratio: 8.604679e-02	ci left: 8.943141e-03	ci right 9.751684e-03	k: 2055	n:220000
Cons ci ratio: 1.582210e-02	ci left: 2.164166e-01	ci right 2.198726e-01	k: 47991	n:220000
KS ci ratio: 1.264394e-01	ci left: 4.074871e-03	ci right 4.629222e-03	k: 956	n:220000
ZNF676   220000 perm   68 sec   (3214 perm/sec)   p_kst 4.345455e-03   p_cons 2.181409e-01   p_joint 9.340909e-03

Joint ci ratio: 8.911038e-02	ci left: 7.971520e-03	ci right 8.719211e-03	k: 1918	n:230000
Cons ci ratio: 1.547954e-02	ci left: 2.163400e-01	ci right 2.197193e-01	k: 50146	n:230000
KS ci ratio: 1.233818e-01	ci left: 4.099881e-03	ci right 4.643161e-03	k: 1004	n:230000
ZNF676   230000 perm   72 sec   (3177 perm/sec)   p_kst 4.365217e-03   p_cons 2.180261e-01   p_joint 8.339130e-03

Joint ci ratio: 8.813597e-02	ci left: 7.814541e-03	ci right 8.539079e-03	k: 1961	n:240000
Cons ci ratio: 1.514609e-02	ci left: 2.165448e-01	ci right 2.198537e-01	k: 52367	n:240000
KS ci ratio: 1.208822e-01	ci left: 4.098706e-03	ci right 4.630040e-03	k: 1046	n:240000
ZNF676   240000 perm   76 sec   (3141 perm/sec)   p_kst 4.358333e-03   p_cons 2.181958e-01   p_joint 8.170833e-03

Joint ci ratio: 8.987483e-02	ci left: 7.212446e-03	ci right 7.895045e-03	k: 1887	n:250000
Cons ci ratio: 1.485000e-02	ci left: 2.163509e-01	ci right 2.195917e-01	k: 54492	n:250000
KS ci ratio: 1.189131e-01	ci left: 4.070555e-03	ci right 4.589040e-03	k: 1081	n:250000
ZNF676   250000 perm   80 sec   (3106 perm/sec)   p_kst 4.324000e-03   p_cons 2.179680e-01   p_joint 7.548000e-03

Joint ci ratio: 9.143748e-02	ci left: 6.698149e-03	ci right 7.343683e-03	k: 1824	n:260000
Cons ci ratio: 1.456109e-02	ci left: 2.163950e-01	ci right 2.195728e-01	k: 56675	n:260000
KS ci ratio: 1.164626e-01	ci left: 4.085712e-03	ci right 4.594665e-03	k: 1127	n:260000
ZNF676   260000 perm   85 sec   (3072 perm/sec)   p_kst 4.334615e-03   p_cons 2.179808e-01   p_joint 7.015385e-03

Joint ci ratio: 9.040790e-02	ci left: 6.602073e-03	ci right 7.230804e-03	k: 1866	n:270000
Cons ci ratio: 1.429275e-02	ci left: 2.163330e-01	ci right 2.194509e-01	k: 58830	n:270000
KS ci ratio: 1.148474e-01	ci left: 4.049475e-03	ci right 4.546443e-03	k: 1159	n:270000
ZNF676   270000 perm   89 sec   (3038 perm/sec)   p_kst 4.292593e-03   p_cons 2.178889e-01   p_joint 6.911111e-03

Joint ci ratio: 9.133472e-02	ci left: 6.237091e-03	ci right 6.837477e-03	k: 1829	n:280000
Cons ci ratio: 1.404019e-02	ci left: 2.162403e-01	ci right 2.193013e-01	k: 60975	n:280000
KS ci ratio: 1.128705e-01	ci left: 4.047109e-03	ci right 4.534668e-03	k: 1200	n:280000
ZNF676   280000 perm   93 sec   (3005 perm/sec)   p_kst 4.285714e-03   p_cons 2.177679e-01   p_joint 6.532143e-03

Joint ci ratio: 9.109494e-02	ci left: 6.055689e-03	ci right 6.637001e-03	k: 1839	n:290000
Cons ci ratio: 1.379777e-02	ci left: 2.162232e-01	ci right 2.192307e-01	k: 63140	n:290000
KS ci ratio: 1.111722e-01	ci left: 4.031563e-03	ci right 4.509462e-03	k: 1237	n:290000
ZNF676   290000 perm   98 sec   (2971 perm/sec)   p_kst 4.265517e-03   p_cons 2.177241e-01   p_joint 6.341379e-03

Joint ci ratio: 7.688733e-02	ci left: 8.259592e-03	ci right 8.923287e-03	k: 2576	n:300000
Cons ci ratio: 1.335800e-02	ci left: 2.215414e-01	ci right 2.245239e-01	k: 66909	n:300000
KS ci ratio: 1.121855e-01	ci left: 3.825870e-03	ci right 4.283792e-03	k: 1215	n:300000
ZNF676   300000 perm   102 sec   (2940 perm/sec)   p_kst 4.050000e-03   p_cons 2.230300e-01   p_joint 8.586667e-03

Joint ci ratio: 7.727696e-02	ci left: 7.914008e-03	ci right 8.553301e-03	k: 2551	n:310000
Cons ci ratio: 1.313874e-02	ci left: 2.216193e-01	ci right 2.245536e-01	k: 69156	n:310000
KS ci ratio: 1.104289e-01	ci left: 3.824758e-03	ci right 4.274913e-03	k: 1254	n:310000
ZNF676   310000 perm   107 sec   (2908 perm/sec)   p_kst 4.045161e-03   p_cons 2.230839e-01   p_joint 8.229032e-03

Joint ci ratio: 7.820345e-02	ci left: 7.485840e-03	ci right 8.098124e-03	k: 2492	n:320000
Cons ci ratio: 1.274614e-02	ci left: 2.266845e-01	ci right 2.295954e-01	k: 73004	n:320000
KS ci ratio: 1.087101e-01	ci left: 3.826809e-03	ci right 4.269747e-03	k: 1294	n:320000
ZNF676   320000 perm   111 sec   (2877 perm/sec)   p_kst 4.043750e-03   p_cons 2.281375e-01   p_joint 7.787500e-03

Joint ci ratio: 7.997719e-02	ci left: 6.938118e-03	ci right 7.519071e-03	k: 2384	n:330000
Cons ci ratio: 1.256108e-02	ci left: 2.264394e-01	ci right 2.293047e-01	k: 75197	n:330000
KS ci ratio: 1.071498e-01	ci left: 3.822888e-03	ci right 4.258620e-03	k: 1332	n:330000
ZNF676   330000 perm   116 sec   (2847 perm/sec)   p_kst 4.036364e-03   p_cons 2.278697e-01   p_joint 7.224242e-03

Joint ci ratio: 8.131833e-02	ci left: 6.512094e-03	ci right 7.066951e-03	k: 2307	n:340000
Cons ci ratio: 1.236937e-02	ci left: 2.266200e-01	ci right 2.294435e-01	k: 77530	n:340000
KS ci ratio: 1.057323e-01	ci left: 3.813512e-03	ci right 4.242068e-03	k: 1368	n:340000
ZNF676   340000 perm   121 sec   (2818 perm/sec)   p_kst 4.023529e-03   p_cons 2.280294e-01   p_joint 6.785294e-03

Joint ci ratio: 8.102643e-02	ci left: 6.373601e-03	ci right 6.914616e-03	k: 2324	n:350000
Cons ci ratio: 1.219637e-02	ci left: 2.264969e-01	ci right 2.292791e-01	k: 79760	n:350000
KS ci ratio: 1.044069e-01	ci left: 3.801926e-03	ci right 4.223494e-03	k: 1403	n:350000
ZNF676   350000 perm   126 sec   (2778 perm/sec)   p_kst 4.008571e-03   p_cons 2.278857e-01   p_joint 6.640000e-03

Joint ci ratio: 8.106906e-02	ci left: 6.191090e-03	ci right 6.716902e-03	k: 2322	n:360000
Cons ci ratio: 1.202957e-02	ci left: 2.264058e-01	ci right 2.291486e-01	k: 81999	n:360000
KS ci ratio: 1.032382e-01	ci left: 3.782895e-03	ci right 4.197374e-03	k: 1435	n:360000
ZNF676   360000 perm   131 sec   (2750 perm/sec)   p_kst 3.986111e-03   p_cons 2.277750e-01   p_joint 6.450000e-03

Joint ci ratio: 8.132314e-02	ci left: 5.986668e-03	ci right 6.496787e-03	k: 2308	n:370000
Cons ci ratio: 1.185786e-02	ci left: 2.266624e-01	ci right 2.293689e-01	k: 84365	n:370000
KS ci ratio: 1.019337e-01	ci left: 3.778089e-03	ci right 4.186497e-03	k: 1472	n:370000
ZNF676   370000 perm   136 sec   (2723 perm/sec)   p_kst 3.978378e-03   p_cons 2.280135e-01   p_joint 6.237838e-03

Joint ci ratio: 7.500416e-02	ci left: 6.869065e-03	ci right 7.406912e-03	k: 2711	n:380000
Cons ci ratio: 1.170649e-02	ci left: 2.265093e-01	ci right 2.291791e-01	k: 86580	n:380000
KS ci ratio: 1.008789e-01	ci left: 3.758173e-03	ci right 4.159975e-03	k: 1503	n:380000
ZNF676   380000 perm   141 sec   (2696 perm/sec)   p_kst 3.955263e-03   p_cons 2.278421e-01   p_joint 7.134211e-03

Joint ci ratio: 7.465157e-02	ci left: 6.758340e-03	ci right 7.284922e-03	k: 2737	n:390000
Cons ci ratio: 1.156095e-02	ci left: 2.263591e-01	ci right 2.289937e-01	k: 88793	n:390000
KS ci ratio: 9.998706e-02	ci left: 3.729299e-03	ci right 4.124282e-03	k: 1530	n:390000
ZNF676   390000 perm   146 sec   (2669 perm/sec)   p_kst 3.923077e-03   p_cons 2.276744e-01   p_joint 7.017949e-03

Outputting figure to mutsig2_images.part000000000199/ZNF676.21_1779_390000_0.0039231_0.22767_0.0070179.png
                gene_name: ZNF676
               theta_stop: 0.100 
                    nperm: 390000 
                     p_ks: 0.0039 
        ci_ks_bounds_left: 0.0037 
       ci_ks_bounds_right: 0.0041 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.0070 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0073 

Current progress: 2 percent done.
ZNF716
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
Cons ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
ZNF716   10000 perm   2 sec   (4754 perm/sec)   p_kst 4.837000e-01   p_cons 3.523000e-01   p_joint 5.003000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF716.14_1504_10000_0.4837_0.3523_0.5003.png
                gene_name: ZNF716
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 3 percent done.
ZNF679
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
Cons ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
KS ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
ZNF679   10000 perm   2 sec   (5137 perm/sec)   p_kst 4.184000e-01   p_cons 3.152000e-01   p_joint 4.257000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF679.10_1252_10000_0.4184_0.3152_0.4257.png
                gene_name: ZNF679
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 5 percent done.
ZNF711
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
ZNF711   10000 perm   2 sec   (5351 perm/sec)   p_kst 3.540000e-01   p_cons 3.360000e-02   p_joint 8.210000e-02

Joint ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
Cons ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
KS ci ratio: 3.849054e-02	ci left: 3.348765e-01	ci right 3.480696e-01	k: 6829	n:20000
ZNF711   20000 perm   4 sec   (4806 perm/sec)   p_kst 3.414500e-01   p_cons 3.205000e-02   p_joint 6.020000e-02

Joint ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
Cons ci ratio: 1.234817e-01	ci left: 3.048980e-02	ci right 3.453473e-02	k: 974	n:30000
KS ci ratio: 3.188702e-02	ci left: 3.296253e-01	ci right 3.403400e-01	k: 10049	n:30000
ZNF711   30000 perm   7 sec   (4580 perm/sec)   p_kst 3.349667e-01   p_cons 3.246667e-02   p_joint 4.770000e-02

Joint ci ratio: 8.039571e-02	ci left: 5.384018e-02	ci right 5.837453e-02	k: 2243	n:40000
Cons ci ratio: 1.061812e-01	ci left: 3.119779e-02	ci right 3.472044e-02	k: 1317	n:40000
KS ci ratio: 2.751764e-02	ci left: 3.319188e-01	ci right 3.412049e-01	k: 13462	n:40000
ZNF711   40000 perm   9 sec   (4450 perm/sec)   p_kst 3.365500e-01   p_cons 3.292500e-02   p_joint 5.607500e-02

Joint ci ratio: 6.294629e-02	ci left: 6.970977e-02	ci right 7.426007e-02	k: 3598	n:50000
Cons ci ratio: 9.451282e-02	ci left: 3.168587e-02	ci right 3.484862e-02	k: 1662	n:50000
KS ci ratio: 2.462107e-02	ci left: 3.322582e-01	ci right 3.405608e-01	k: 16820	n:50000
ZNF711   50000 perm   12 sec   (4345 perm/sec)   p_kst 3.364000e-01   p_cons 3.324000e-02   p_joint 7.196000e-02

Outputting figure to mutsig2_images.part000000000199/ZNF711.10_2314_50000_0.3364_0.03324_0.07196.png
                gene_name: ZNF711
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 7 percent done.
ZNF780A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
Cons ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
KS ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
ZNF780A   10000 perm   2 sec   (4940 perm/sec)   p_kst 1.539000e-01   p_cons 9.602000e-01   p_joint 3.192000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF780A.9_2124_10000_0.1539_0.9602_0.3192.png
                gene_name: ZNF780A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 8 percent done.
ZNF71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
KS ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
ZNF71   10000 perm   2 sec   (5382 perm/sec)   p_kst 7.809000e-01   p_cons 7.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF71.8_1474_10000_0.7809_0.7055_1.png
                gene_name: ZNF71
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
ZNF713
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
KS ci ratio: 1.025626e-02	ci left: 9.310246e-01	ci right 9.407196e-01	k: 9360	n:10000
ZNF713   10000 perm   2 sec   (5542 perm/sec)   p_kst 9.360000e-01   p_cons 4.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF713.7_1309_10000_0.936_0.4738_1.png
                gene_name: ZNF713
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
ZNF735
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
Cons ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
ZNF735   10000 perm   2 sec   (5846 perm/sec)   p_kst 3.035000e-01   p_cons 7.331000e-01   p_joint 5.426000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF735.7_1253_10000_0.3035_0.7331_0.5426.png
                gene_name: ZNF735
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
ZNF667
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
KS ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
ZNF667   10000 perm   2 sec   (5498 perm/sec)   p_kst 8.944000e-01   p_cons 9.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF667.6_1849_10000_0.8944_0.9262_1.png
                gene_name: ZNF667
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ZNF681
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
Cons ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
KS ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
ZNF681   10000 perm   2 sec   (5338 perm/sec)   p_kst 5.595000e-01   p_cons 6.199000e-01   p_joint 8.567000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF681.6_1954_10000_0.5595_0.6199_0.8567.png
                gene_name: ZNF681
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 17 percent done.
ZNF695
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
Cons ci ratio: 2.087943e-02	ci left: 7.707371e-01	ci right 7.871001e-01	k: 7790	n:10000
KS ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
ZNF695   10000 perm   2 sec   (5748 perm/sec)   p_kst 1.196000e-01   p_cons 7.790000e-01   p_joint 2.912000e-01

Joint ci ratio: 5.332765e-02	ci left: 2.069962e-01	ci right 2.183874e-01	k: 4253	n:20000
Cons ci ratio: 1.465239e-02	ci left: 7.758083e-01	ci right 7.873098e-01	k: 15632	n:20000
KS ci ratio: 7.493679e-02	ci left: 1.158219e-01	ci right 1.248888e-01	k: 2406	n:20000
ZNF695   20000 perm   4 sec   (5175 perm/sec)   p_kst 1.203000e-01   p_cons 7.816000e-01   p_joint 2.126500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF695.6_1564_20000_0.1203_0.7816_0.21265.png
                gene_name: ZNF695
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 19 percent done.
ZNF75D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
ZNF75D   10000 perm   2 sec   (6466 perm/sec)   p_kst 1.870000e-01   p_cons 7.786000e-01   p_joint 3.714000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF75D.6_1553_10000_0.187_0.7786_0.3714.png
                gene_name: ZNF75D
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
ZNF761
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362839e-02	ci left: 5.662431e-01	ci right 5.857126e-01	k: 5760	n:10000
Cons ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
KS ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
ZNF761   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.395000e-01   p_cons 7.406000e-01   p_joint 5.760000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF761.6_2254_10000_0.3395_0.7406_0.576.png
                gene_name: ZNF761
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 22 percent done.
ZNF669
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
ZNF669   10000 perm   2 sec   (5751 perm/sec)   p_kst 7.581000e-01   p_cons 1.129000e-01   p_joint 3.682000e-01

Joint ci ratio: 3.953606e-02	ci left: 3.229860e-01	ci right 3.360636e-01	k: 6590	n:20000
Cons ci ratio: 7.886285e-02	ci left: 1.055973e-01	ci right 1.143165e-01	k: 2198	n:20000
KS ci ratio: 1.546329e-02	ci left: 7.566906e-01	ci right 7.685329e-01	k: 15253	n:20000
ZNF669   20000 perm   4 sec   (5175 perm/sec)   p_kst 7.626500e-01   p_cons 1.099000e-01   p_joint 3.295000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF669.5_1411_20000_0.76265_0.1099_0.3295.png
                gene_name: ZNF669
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 24 percent done.
ZNF671
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
ZNF671   10000 perm   2 sec   (5428 perm/sec)   p_kst 6.075000e-01   p_cons 5.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF671.5_1621_10000_0.6075_0.5748_1.png
                gene_name: ZNF671
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ZNF680
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
Cons ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
KS ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
ZNF680   10000 perm   2 sec   (5660 perm/sec)   p_kst 3.662000e-01   p_cons 8.810000e-01   p_joint 6.524000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF680.5_1732_10000_0.3662_0.881_0.6524.png
                gene_name: ZNF680
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 27 percent done.
ZNF700
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
Cons ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
KS ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
ZNF700   10000 perm   2 sec   (5193 perm/sec)   p_kst 1.156000e-01   p_cons 1.550000e-01   p_joint 1.037000e-01

Joint ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
Cons ci ratio: 6.214010e-02	ci left: 1.607684e-01	ci right 1.711289e-01	k: 3318	n:20000
KS ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
ZNF700   20000 perm   4 sec   (4704 perm/sec)   p_kst 1.119000e-01   p_cons 1.659000e-01   p_joint 1.060000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF700.5_2245_20000_0.1119_0.1659_0.106.png
                gene_name: ZNF700
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 29 percent done.
ZNF737
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
KS ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
ZNF737   10000 perm   2 sec   (5742 perm/sec)   p_kst 3.784000e-01   p_cons 9.070000e-02   p_joint 1.957000e-01

Joint ci ratio: 4.492720e-02	ci left: 2.694652e-01	ci right 2.819001e-01	k: 5513	n:20000
Cons ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
KS ci ratio: 3.583821e-02	ci left: 3.675369e-01	ci right 3.809997e-01	k: 7485	n:20000
ZNF737   20000 perm   4 sec   (5151 perm/sec)   p_kst 3.742500e-01   p_cons 9.135000e-02   p_joint 2.756500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF737.5_1627_20000_0.37425_0.09135_0.27565.png
                gene_name: ZNF737
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
ZNF746
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
ZNF746   10000 perm   2 sec   (5223 perm/sec)   p_kst 3.329000e-01   p_cons 8.870000e-02   p_joint 2.205000e-01

Joint ci ratio: 5.809124e-02	ci left: 1.800351e-01	ci right 1.908565e-01	k: 3708	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 3.943786e-02	ci left: 3.240803e-01	ci right 3.371690e-01	k: 6612	n:20000
ZNF746   20000 perm   4 sec   (4741 perm/sec)   p_kst 3.306000e-01   p_cons 8.970000e-02   p_joint 1.854000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF746.5_1966_20000_0.3306_0.0897_0.1854.png
                gene_name: ZNF746
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 32 percent done.
ZNF777
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
Cons ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
KS ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
ZNF777   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.976000e-01   p_cons 9.590000e-02   p_joint 2.341000e-01

Joint ci ratio: 6.939191e-02	ci left: 1.328045e-01	ci right 1.424011e-01	k: 2751	n:20000
Cons ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
KS ci ratio: 4.320308e-02	ci left: 2.852571e-01	ci right 2.979036e-01	k: 5831	n:20000
ZNF777   20000 perm   4 sec   (4894 perm/sec)   p_kst 2.915500e-01   p_cons 9.315000e-02   p_joint 1.375500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF777.5_2516_20000_0.29155_0.09315_0.13755.png
                gene_name: ZNF777
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 34 percent done.
ZNF780B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
Cons ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
ZNF780B   10000 perm   2 sec   (5687 perm/sec)   p_kst 8.410000e-02   p_cons 9.723000e-01   p_joint 2.052000e-01

Joint ci ratio: 5.648884e-02	ci left: 1.885395e-01	ci right 1.995496e-01	k: 3880	n:20000
Cons ci ratio: 4.919931e-03	ci left: 9.670225e-01	ci right 9.718397e-01	k: 19390	n:20000
KS ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
ZNF780B   20000 perm   4 sec   (5112 perm/sec)   p_kst 8.510000e-02   p_cons 9.695000e-01   p_joint 1.940000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF780B.5_2518_20000_0.0851_0.9695_0.194.png
                gene_name: ZNF780B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 36 percent done.
ZNF79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
KS ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
ZNF79   10000 perm   2 sec   (5296 perm/sec)   p_kst 8.533000e-01   p_cons 4.385000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF79.5_1517_10000_0.8533_0.4385_0.8904.png
                gene_name: ZNF79
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 37 percent done.
ZNF677
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
Cons ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
KS ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
ZNF677   10000 perm   2 sec   (5723 perm/sec)   p_kst 5.712000e-01   p_cons 7.702000e-01   p_joint 7.292000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF677.4_1767_10000_0.5712_0.7702_0.7292.png
                gene_name: ZNF677
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 39 percent done.
ZNF678
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
ZNF678   10000 perm   2 sec   (5583 perm/sec)   p_kst 2.476000e-01   p_cons 4.451000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF678.4_1759_10000_0.2476_0.4451_0.3382.png
                gene_name: ZNF678
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
ZNF692
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
Cons ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
KS ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
ZNF692   10000 perm   2 sec   (5633 perm/sec)   p_kst 9.018000e-01   p_cons 9.590000e-02   p_joint 5.913000e-01

Joint ci ratio: 2.935861e-02	ci left: 4.643115e-01	ci right 4.781968e-01	k: 9425	n:20000
Cons ci ratio: 8.605233e-02	ci left: 8.994073e-02	ci right 9.807774e-02	k: 1879	n:20000
KS ci ratio: 9.340631e-03	ci left: 8.937735e-01	ci right 9.022104e-01	k: 17961	n:20000
ZNF692   20000 perm   4 sec   (5084 perm/sec)   p_kst 8.980500e-01   p_cons 9.395000e-02   p_joint 4.712500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF692.4_1623_20000_0.89805_0.09395_0.47125.png
                gene_name: ZNF692
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 42 percent done.
ZNF770
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
KS ci ratio: 1.469016e-02	ci left: 8.703006e-01	ci right 8.832791e-01	k: 8769	n:10000
ZNF770   10000 perm   2 sec   (5806 perm/sec)   p_kst 8.769000e-01   p_cons 8.171000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF770.4_2080_10000_0.8769_0.8171_1.png
                gene_name: ZNF770
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
ZNF781
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.356693e-02	ci left: 4.375213e-01	ci right 4.571094e-01	k: 4473	n:10000
Cons ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
KS ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
ZNF781   10000 perm   2 sec   (6410 perm/sec)   p_kst 2.820000e-01   p_cons 3.231000e-01   p_joint 4.473000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF781.4_988_10000_0.282_0.3231_0.4473.png
                gene_name: ZNF781
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 46 percent done.
ZNF675
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
Cons ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
ZNF675   10000 perm   2 sec   (6133 perm/sec)   p_kst 9.321000e-01   p_cons 1.848000e-01   p_joint 5.518000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF675.3_1723_10000_0.9321_0.1848_0.5518.png
                gene_name: ZNF675
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 47 percent done.
ZNF683
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
ZNF683   10000 perm   2 sec   (6228 perm/sec)   p_kst 4.340000e-01   p_cons 2.139000e-01   p_joint 3.686000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF683.3_1535_10000_0.434_0.2139_0.3686.png
                gene_name: ZNF683
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 49 percent done.
ZNF687
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
Cons ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
KS ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
ZNF687   10000 perm   2 sec   (5206 perm/sec)   p_kst 4.790000e-02   p_cons 9.909000e-01   p_joint 2.014000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 2.778431e-03	ci left: 9.886293e-01	ci right 9.914255e-01	k: 19802	n:20000
KS ci ratio: 1.171652e-01	ci left: 4.988666e-02	ci right 5.614409e-02	k: 1059	n:20000
ZNF687   20000 perm   4 sec   (4697 perm/sec)   p_kst 5.295000e-02   p_cons 9.901000e-01   p_joint 1.517500e-01

Joint ci ratio: 5.269506e-02	ci left: 1.516140e-01	ci right 1.598528e-01	k: 4671	n:30000
Cons ci ratio: 2.289691e-03	ci left: 9.887031e-01	ci right 9.910005e-01	k: 29697	n:30000
KS ci ratio: 9.633932e-02	ci left: 4.977495e-02	ci right 5.484553e-02	k: 1568	n:30000
ZNF687   30000 perm   7 sec   (4493 perm/sec)   p_kst 5.226667e-02   p_cons 9.899000e-01   p_joint 1.557000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF687.3_3746_30000_0.052267_0.9899_0.1557.png
                gene_name: ZNF687
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
ZNF697
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
KS ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
ZNF697   10000 perm   2 sec   (6595 perm/sec)   p_kst 5.949000e-01   p_cons 8.187000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF697.3_1646_10000_0.5949_0.8187_1.png
                gene_name: ZNF697
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ZNF699
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
Cons ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
KS ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
ZNF699   10000 perm   2 sec   (6040 perm/sec)   p_kst 2.261000e-01   p_cons 3.628000e-01   p_joint 3.721000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF699.3_1949_10000_0.2261_0.3628_0.3721.png
                gene_name: ZNF699
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 54 percent done.
ZNF70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
ZNF70   10000 perm   2 sec   (6345 perm/sec)   p_kst 7.441000e-01   p_cons 1.323000e-01   p_joint 4.769000e-01

Joint ci ratio: 2.929096e-02	ci left: 4.654605e-01	ci right 4.793475e-01	k: 9448	n:20000
Cons ci ratio: 7.145284e-02	ci left: 1.261067e-01	ci right 1.355010e-01	k: 2615	n:20000
KS ci ratio: 1.628696e-02	ci left: 7.372365e-01	ci right 7.493927e-01	k: 14867	n:20000
ZNF70   20000 perm   4 sec   (5624 perm/sec)   p_kst 7.433500e-01   p_cons 1.307500e-01   p_joint 4.724000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF70.3_1345_20000_0.74335_0.13075_0.4724.png
                gene_name: ZNF70
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 56 percent done.
ZNF727
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
Cons ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
KS ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
ZNF727   10000 perm   2 sec   (6648 perm/sec)   p_kst 5.051000e-01   p_cons 4.538000e-01   p_joint 5.448000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF727.3_1514_10000_0.5051_0.4538_0.5448.png
                gene_name: ZNF727
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 58 percent done.
ZNF74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
ZNF74   10000 perm   2 sec   (6073 perm/sec)   p_kst 9.479000e-01   p_cons 1.029000e-01   p_joint 4.416000e-01

Joint ci ratio: 2.964587e-02	ci left: 4.594665e-01	ci right 4.733433e-01	k: 9328	n:20000
Cons ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
KS ci ratio: 6.464645e-03	ci left: 9.452947e-01	ci right 9.514741e-01	k: 18969	n:20000
ZNF74   20000 perm   4 sec   (5404 perm/sec)   p_kst 9.484500e-01   p_cons 1.030000e-01   p_joint 4.664000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF74.3_1955_20000_0.94845_0.103_0.4664.png
                gene_name: ZNF74
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 59 percent done.
ZNF763
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
ZNF763   10000 perm   2 sec   (6365 perm/sec)   p_kst 1.673000e-01   p_cons 3.888000e-01   p_joint 3.992000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF763.3_1210_10000_0.1673_0.3888_0.3992.png
                gene_name: ZNF763
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 61 percent done.
ZNF765
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
Cons ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
KS ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
ZNF765   10000 perm   2 sec   (6218 perm/sec)   p_kst 1.012000e-01   p_cons 1.958000e-01   p_joint 1.156000e-01

Joint ci ratio: 7.765789e-02	ci left: 1.085947e-01	ci right 1.174182e-01	k: 2259	n:20000
Cons ci ratio: 5.568893e-02	ci left: 1.929912e-01	ci right 2.040966e-01	k: 3970	n:20000
KS ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
ZNF765   20000 perm   4 sec   (5487 perm/sec)   p_kst 1.041000e-01   p_cons 1.985000e-01   p_joint 1.129500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF765.3_1584_20000_0.1041_0.1985_0.11295.png
                gene_name: ZNF765
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 63 percent done.
ZNF772
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
Cons ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
KS ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
ZNF772   10000 perm   1 sec   (6692 perm/sec)   p_kst 2.865000e-01   p_cons 2.653000e-01   p_joint 3.441000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF772.3_1490_10000_0.2865_0.2653_0.3441.png
                gene_name: ZNF772
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 64 percent done.
ZNF774
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KS ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
ZNF774   10000 perm   2 sec   (6121 perm/sec)   p_kst 3.467000e-01   p_cons 8.256000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF774.3_1464_10000_0.3467_0.8256_0.4565.png
                gene_name: ZNF774
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 66 percent done.
ZNF778
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
Cons ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
KS ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
ZNF778   10000 perm   2 sec   (5771 perm/sec)   p_kst 3.620000e-01   p_cons 1.992000e-01   p_joint 2.871000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF778.3_2210_10000_0.362_0.1992_0.2871.png
                gene_name: ZNF778
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 68 percent done.
ZNF782
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
ZNF782   10000 perm   2 sec   (5905 perm/sec)   p_kst 1.740000e-02   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.056035e-01	ci left: 1.601286e-02	ci right 1.972920e-02	k: 356	n:20000
ZNF782   20000 perm   4 sec   (5224 perm/sec)   p_kst 1.780000e-02   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 6.718822e-01	ci left: 7.573066e-04	ci right 1.544465e-03	k: 33	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 1.540268e-01	ci left: 1.950355e-02	ci right 2.279010e-02	k: 633	n:30000
ZNF782   30000 perm   6 sec   (4969 perm/sec)   p_kst 2.110000e-02   p_cons 3.333333e-05   p_joint 1.100000e-03

Joint ci ratio: 6.273885e-01	ci left: 6.723615e-04	ci right 1.303718e-03	k: 38	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 1.343144e-01	ci left: 1.944797e-02	ci right 2.227219e-02	k: 833	n:40000
ZNF782   40000 perm   8 sec   (4833 perm/sec)   p_kst 2.082500e-02   p_cons 2.500000e-05   p_joint 9.500000e-04

Joint ci ratio: 7.541931e-01	ci left: 3.397085e-04	ci right 7.618283e-04	k: 26	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 1.201053e-01	ci left: 1.960578e-02	ci right 2.213028e-02	k: 1042	n:50000
ZNF782   50000 perm   11 sec   (4709 perm/sec)   p_kst 2.084000e-02   p_cons 2.000000e-05   p_joint 5.200000e-04

Joint ci ratio: 7.686023e-01	ci left: 2.696623e-04	ci right 6.150212e-04	k: 25	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 1.089143e-01	ci left: 1.998114e-02	ci right 2.229884e-02	k: 1267	n:60000
ZNF782   60000 perm   13 sec   (4596 perm/sec)   p_kst 2.111667e-02   p_cons 1.666667e-05   p_joint 4.166667e-04

Joint ci ratio: 7.406569e-01	ci left: 2.542030e-04	ci right 5.611448e-04	k: 27	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 1.004657e-01	ci left: 2.021529e-02	ci right 2.236751e-02	k: 1489	n:70000
ZNF782   70000 perm   16 sec   (4499 perm/sec)   p_kst 2.127143e-02   p_cons 1.428571e-05   p_joint 3.857143e-04

Joint ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 9.535536e-02	ci left: 1.970013e-02	ci right 2.168484e-02	k: 1654	n:80000
ZNF782   80000 perm   18 sec   (4418 perm/sec)   p_kst 2.067500e-02   p_cons 1.250000e-05   p_joint 3.875000e-04

Joint ci ratio: 4.787233e-01	ci left: 5.672039e-04	ci right 9.328867e-04	k: 66	n:90000
Cons ci ratio: 2.263163e+00	ci left: 2.691226e-06	ci right 8.027198e-05	k: 2	n:90000
KS ci ratio: 8.975133e-02	ci left: 1.982320e-02	ci right 2.169676e-02	k: 1867	n:90000
ZNF782   90000 perm   21 sec   (4334 perm/sec)   p_kst 2.074444e-02   p_cons 2.222222e-05   p_joint 7.333333e-04

Joint ci ratio: 4.650509e-01	ci left: 5.457237e-04	ci right 8.843263e-04	k: 70	n:100000
Cons ci ratio: 2.263168e+00	ci left: 2.422102e-06	ci right 7.224499e-05	k: 2	n:100000
KS ci ratio: 8.549448e-02	ci left: 1.970898e-02	ci right 2.147898e-02	k: 2058	n:100000
ZNF782   100000 perm   24 sec   (4255 perm/sec)   p_kst 2.058000e-02   p_cons 2.000000e-05   p_joint 7.000000e-04

Joint ci ratio: 3.198469e-01	ci left: 1.145899e-03	ci right 1.590151e-03	k: 149	n:110000
Cons ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
KS ci ratio: 8.175386e-02	ci left: 1.963508e-02	ci right 2.131761e-02	k: 2251	n:110000
ZNF782   110000 perm   26 sec   (4175 perm/sec)   p_kst 2.046364e-02   p_cons 2.727273e-05   p_joint 1.354545e-03

Joint ci ratio: 3.077750e-01	ci left: 1.142535e-03	ci right 1.565487e-03	k: 161	n:120000
Cons ci ratio: 1.959959e+00	ci left: 5.155631e-06	ci right 7.305885e-05	k: 3	n:120000
KS ci ratio: 7.820399e-02	ci left: 1.970569e-02	ci right 2.131760e-02	k: 2460	n:120000
ZNF782   120000 perm   29 sec   (4101 perm/sec)   p_kst 2.050000e-02   p_cons 2.500000e-05   p_joint 1.341667e-03

Joint ci ratio: 3.637990e-01	ci left: 7.303943e-04	ci right 1.061753e-03	k: 115	n:130000
Cons ci ratio: 1.959962e+00	ci left: 4.759042e-06	ci right 6.743907e-05	k: 3	n:130000
KS ci ratio: 7.529593e-02	ci left: 1.965352e-02	ci right 2.119875e-02	k: 2654	n:130000
ZNF782   130000 perm   32 sec   (4032 perm/sec)   p_kst 2.041538e-02   p_cons 2.307692e-05   p_joint 8.846154e-04

Joint ci ratio: 3.653904e-01	ci left: 6.717308e-04	ci right 9.781257e-04	k: 114	n:140000
Cons ci ratio: 1.959965e+00	ci left: 4.419108e-06	ci right 6.262209e-05	k: 3	n:140000
KS ci ratio: 7.222543e-02	ci left: 1.986233e-02	ci right 2.135762e-02	k: 2884	n:140000
ZNF782   140000 perm   35 sec   (3970 perm/sec)   p_kst 2.060000e-02   p_cons 2.142857e-05   p_joint 8.142857e-04

Joint ci ratio: 3.562187e-01	ci left: 6.633226e-04	ci right 9.565290e-04	k: 120	n:150000
Cons ci ratio: 1.753042e+00	ci left: 7.265815e-06	ci right 6.827584e-05	k: 4	n:150000
KS ci ratio: 6.988118e-02	ci left: 1.982816e-02	ci right 2.127046e-02	k: 3081	n:150000
ZNF782   150000 perm   38 sec   (3909 perm/sec)   p_kst 2.054000e-02   p_cons 2.666667e-05   p_joint 8.000000e-04

Joint ci ratio: 3.861235e-01	ci left: 5.198340e-04	ci right 7.738287e-04	k: 102	n:160000
Cons ci ratio: 1.753044e+00	ci left: 6.811699e-06	ci right 6.400868e-05	k: 4	n:160000
KS ci ratio: 6.779353e-02	ci left: 1.977436e-02	ci right 2.116809e-02	k: 3274	n:160000
ZNF782   160000 perm   42 sec   (3849 perm/sec)   p_kst 2.046250e-02   p_cons 2.500000e-05   p_joint 6.375000e-04

Joint ci ratio: 3.702821e-01	ci left: 5.371668e-04	ci right 7.862572e-04	k: 111	n:170000
Cons ci ratio: 1.753046e+00	ci left: 6.411009e-06	ci right 6.024353e-05	k: 4	n:170000
KS ci ratio: 6.567012e-02	ci left: 1.985479e-02	ci right 2.120868e-02	k: 3489	n:170000
ZNF782   170000 perm   45 sec   (3791 perm/sec)   p_kst 2.052353e-02   p_cons 2.352941e-05   p_joint 6.529412e-04

Joint ci ratio: 3.577251e-01	ci left: 5.477053e-04	ci right 7.910666e-04	k: 119	n:180000
Cons ci ratio: 1.753048e+00	ci left: 6.054840e-06	ci right 5.689673e-05	k: 4	n:180000
KS ci ratio: 6.361189e-02	ci left: 2.000346e-02	ci right 2.132316e-02	k: 3718	n:180000
ZNF782   180000 perm   48 sec   (3734 perm/sec)   p_kst 2.065556e-02   p_cons 2.222222e-05   p_joint 6.611111e-04

Joint ci ratio: 4.063845e-01	ci left: 3.903593e-04	ci right 5.938087e-04	k: 92	n:190000
Cons ci ratio: 1.753050e+00	ci left: 5.736162e-06	ci right 5.390221e-05	k: 4	n:190000
KS ci ratio: 6.187193e-02	ci left: 2.004894e-02	ci right 2.133416e-02	k: 3930	n:190000
ZNF782   190000 perm   52 sec   (3681 perm/sec)   p_kst 2.068421e-02   p_cons 2.105263e-05   p_joint 4.842105e-04

Joint ci ratio: 4.020870e-01	ci left: 3.798240e-04	ci right 5.751307e-04	k: 94	n:200000
Cons ci ratio: 1.753051e+00	ci left: 5.449353e-06	ci right 5.120714e-05	k: 4	n:200000
KS ci ratio: 6.026735e-02	ci left: 2.009032e-02	ci right 2.134363e-02	k: 4142	n:200000
ZNF782   200000 perm   55 sec   (3630 perm/sec)   p_kst 2.071000e-02   p_cons 2.000000e-05   p_joint 4.700000e-04

Joint ci ratio: 3.050509e-01	ci left: 6.660384e-04	ci right 9.099868e-04	k: 164	n:210000
Cons ci ratio: 1.600307e+00	ci left: 7.730931e-06	ci right 5.556260e-05	k: 5	n:210000
KS ci ratio: 5.882286e-02	ci left: 2.009998e-02	ci right 2.132282e-02	k: 4348	n:210000
ZNF782   210000 perm   59 sec   (3578 perm/sec)   p_kst 2.070476e-02   p_cons 2.380952e-05   p_joint 7.809524e-04

Joint ci ratio: 2.561215e-01	ci left: 9.275161e-04	ci right 1.204082e-03	k: 233	n:220000
Cons ci ratio: 1.481594e+00	ci left: 1.000867e-05	ci right 5.936029e-05	k: 6	n:220000
KS ci ratio: 5.747105e-02	ci left: 2.011358e-02	ci right 2.130819e-02	k: 4555	n:220000
ZNF782   220000 perm   62 sec   (3532 perm/sec)   p_kst 2.070455e-02   p_cons 2.727273e-05   p_joint 1.059091e-03

Joint ci ratio: 2.487855e-01	ci left: 9.442095e-04	ci right 1.216442e-03	k: 247	n:230000
Cons ci ratio: 1.481595e+00	ci left: 9.573512e-06	ci right 5.677945e-05	k: 6	n:230000
KS ci ratio: 5.613018e-02	ci left: 2.018203e-02	ci right 2.135183e-02	k: 4775	n:230000
ZNF782   230000 perm   66 sec   (3489 perm/sec)   p_kst 2.076087e-02   p_cons 2.608696e-05   p_joint 1.073913e-03

Joint ci ratio: 2.458320e-01	ci left: 9.283171e-04	ci right 1.192304e-03	k: 253	n:240000
Cons ci ratio: 1.481596e+00	ci left: 9.174613e-06	ci right 5.441367e-05	k: 6	n:240000
KS ci ratio: 5.507065e-02	ci left: 2.010532e-02	ci right 2.124797e-02	k: 4961	n:240000
ZNF782   240000 perm   70 sec   (3448 perm/sec)   p_kst 2.067083e-02   p_cons 2.500000e-05   p_joint 1.054167e-03

Joint ci ratio: 2.429811e-01	ci left: 9.137138e-04	ci right 1.170080e-03	k: 259	n:250000
Cons ci ratio: 1.481597e+00	ci left: 8.807626e-06	ci right 5.223716e-05	k: 6	n:250000
KS ci ratio: 5.397267e-02	ci left: 2.010598e-02	ci right 2.122517e-02	k: 5165	n:250000
ZNF782   250000 perm   74 sec   (3397 perm/sec)   p_kst 2.066000e-02   p_cons 2.400000e-05   p_joint 1.036000e-03

Joint ci ratio: 2.402272e-01	ci left: 9.002501e-04	ci right 1.149550e-03	k: 265	n:260000
Cons ci ratio: 1.481598e+00	ci left: 8.468870e-06	ci right 5.022806e-05	k: 6	n:260000
KS ci ratio: 5.298320e-02	ci left: 2.007263e-02	ci right 2.116886e-02	k: 5360	n:260000
ZNF782   260000 perm   77 sec   (3358 perm/sec)   p_kst 2.061538e-02   p_cons 2.307692e-05   p_joint 1.019231e-03

Joint ci ratio: 2.723539e-01	ci left: 6.623581e-04	ci right 8.745210e-04	k: 206	n:270000
Cons ci ratio: 1.481599e+00	ci left: 8.155206e-06	ci right 4.836779e-05	k: 6	n:270000
KS ci ratio: 5.193656e-02	ci left: 2.012603e-02	ci right 2.120281e-02	k: 5578	n:270000
ZNF782   270000 perm   81 sec   (3318 perm/sec)   p_kst 2.065926e-02   p_cons 2.222222e-05   p_joint 7.629630e-04

Joint ci ratio: 2.678628e-01	ci left: 6.620096e-04	ci right 8.699771e-04	k: 213	n:280000
Cons ci ratio: 1.481600e+00	ci left: 7.863947e-06	ci right 4.664039e-05	k: 6	n:280000
KS ci ratio: 5.096307e-02	ci left: 2.016523e-02	ci right 2.122329e-02	k: 5793	n:280000
ZNF782   280000 perm   85 sec   (3277 perm/sec)   p_kst 2.068929e-02   p_cons 2.142857e-05   p_joint 7.607143e-04

Joint ci ratio: 2.635868e-01	ci left: 6.617118e-04	ci right 8.657200e-04	k: 220	n:290000
Cons ci ratio: 1.481600e+00	ci left: 7.592775e-06	ci right 4.503212e-05	k: 6	n:290000
KS ci ratio: 4.993213e-02	ci left: 2.029046e-02	ci right 2.133294e-02	k: 6034	n:290000
ZNF782   290000 perm   90 sec   (3234 perm/sec)   p_kst 2.080690e-02   p_cons 2.068966e-05   p_joint 7.586207e-04

Joint ci ratio: 2.606559e-01	ci left: 6.552261e-04	ci right 8.546224e-04	k: 225	n:300000
Cons ci ratio: 1.481601e+00	ci left: 7.339682e-06	ci right 4.353107e-05	k: 6	n:300000
KS ci ratio: 4.903717e-02	ci left: 2.034497e-02	ci right 2.137098e-02	k: 6256	n:300000
ZNF782   300000 perm   94 sec   (3194 perm/sec)   p_kst 2.085333e-02   p_cons 2.000000e-05   p_joint 7.500000e-04

Joint ci ratio: 2.556153e-01	ci left: 6.612441e-04	ci right 8.579600e-04	k: 234	n:310000
Cons ci ratio: 1.481602e+00	ci left: 7.102917e-06	ci right 4.212686e-05	k: 6	n:310000
KS ci ratio: 4.826481e-02	ci left: 2.033236e-02	ci right 2.134114e-02	k: 6458	n:310000
ZNF782   310000 perm   98 sec   (3156 perm/sec)   p_kst 2.083226e-02   p_cons 1.935484e-05   p_joint 7.548387e-04

Joint ci ratio: 2.678756e-01	ci left: 5.792550e-04	ci right 7.612351e-04	k: 213	n:320000
Cons ci ratio: 1.481602e+00	ci left: 6.880950e-06	ci right 4.081041e-05	k: 6	n:320000
KS ci ratio: 4.748053e-02	ci left: 2.036082e-02	ci right 2.135414e-02	k: 6673	n:320000
ZNF782   320000 perm   103 sec   (3118 perm/sec)   p_kst 2.085313e-02   p_cons 1.875000e-05   p_joint 6.656250e-04

Joint ci ratio: 2.635990e-01	ci left: 5.815010e-04	ci right 7.607892e-04	k: 220	n:330000
Cons ci ratio: 1.385910e+00	ci left: 8.528414e-06	ci right 4.370459e-05	k: 7	n:330000
KS ci ratio: 4.672635e-02	ci left: 2.039366e-02	ci right 2.137235e-02	k: 6890	n:330000
ZNF782   330000 perm   107 sec   (3083 perm/sec)   p_kst 2.087879e-02   p_cons 2.121212e-05   p_joint 6.666667e-04

Joint ci ratio: 2.654104e-01	ci left: 5.561586e-04	ci right 7.290073e-04	k: 217	n:340000
Cons ci ratio: 1.385911e+00	ci left: 8.277577e-06	ci right 4.241917e-05	k: 7	n:340000
KS ci ratio: 4.604009e-02	ci left: 2.039561e-02	ci right 2.135964e-02	k: 7097	n:340000
ZNF782   340000 perm   111 sec   (3050 perm/sec)   p_kst 2.087353e-02   p_cons 2.058824e-05   p_joint 6.382353e-04

Joint ci ratio: 2.595234e-01	ci left: 5.669607e-04	ci right 7.386247e-04	k: 227	n:350000
Cons ci ratio: 1.385911e+00	ci left: 8.041074e-06	ci right 4.120721e-05	k: 7	n:350000
KS ci ratio: 4.541815e-02	ci left: 2.036647e-02	ci right 2.131578e-02	k: 7293	n:350000
ZNF782   350000 perm   116 sec   (3016 perm/sec)   p_kst 2.083714e-02   p_cons 2.000000e-05   p_joint 6.485714e-04

Joint ci ratio: 2.550863e-01	ci left: 5.720012e-04	ci right 7.417593e-04	k: 235	n:360000
Cons ci ratio: 1.306649e+00	ci left: 9.594026e-06	ci right 4.378616e-05	k: 8	n:360000
KS ci ratio: 4.472935e-02	ci left: 2.042145e-02	ci right 2.135851e-02	k: 7519	n:360000
ZNF782   360000 perm   121 sec   (2985 perm/sec)   p_kst 2.088611e-02   p_cons 2.222222e-05   p_joint 6.527778e-04

Joint ci ratio: 4.021313e-01	ci left: 2.053063e-04	ci right 3.108890e-04	k: 94	n:370000
Cons ci ratio: 1.239594e+00	ci left: 1.112269e-05	ci right 4.617464e-05	k: 9	n:370000
KS ci ratio: 4.411460e-02	ci left: 2.043345e-02	ci right 2.135785e-02	k: 7730	n:370000
ZNF782   370000 perm   125 sec   (2955 perm/sec)   p_kst 2.089189e-02   p_cons 2.432432e-05   p_joint 2.540541e-04

Joint ci ratio: 4.000323e-01	ci left: 2.022695e-04	ci right 3.056035e-04	k: 95	n:380000
Cons ci ratio: 1.239595e+00	ci left: 1.082998e-05	ci right 4.495953e-05	k: 9	n:380000
KS ci ratio: 4.346588e-02	ci left: 2.049959e-02	ci right 2.141300e-02	k: 7962	n:380000
ZNF782   380000 perm   130 sec   (2923 perm/sec)   p_kst 2.095263e-02   p_cons 2.368421e-05   p_joint 2.500000e-04

Joint ci ratio: 3.979657e-01	ci left: 1.993898e-04	ci right 3.005878e-04	k: 96	n:390000
Cons ci ratio: 1.239595e+00	ci left: 1.055229e-05	ci right 4.380673e-05	k: 9	n:390000
KS ci ratio: 4.294407e-02	ci left: 2.046855e-02	ci right 2.136936e-02	k: 8157	n:390000
ZNF782   390000 perm   135 sec   (2893 perm/sec)   p_kst 2.091538e-02   p_cons 2.307692e-05   p_joint 2.461538e-04

Joint ci ratio: 3.939256e-01	ci left: 1.989072e-04	ci right 2.985685e-04	k: 98	n:400000
Cons ci ratio: 1.239596e+00	ci left: 1.028848e-05	ci right 4.271158e-05	k: 9	n:400000
KS ci ratio: 4.241729e-02	ci left: 2.046139e-02	ci right 2.135057e-02	k: 8361	n:400000
ZNF782   400000 perm   140 sec   (2864 perm/sec)   p_kst 2.090250e-02   p_cons 2.250000e-05   p_joint 2.450000e-04

Joint ci ratio: 3.919517e-01	ci left: 1.962537e-04	ci right 2.939653e-04	k: 99	n:410000
Cons ci ratio: 1.239596e+00	ci left: 1.003754e-05	ci right 4.166984e-05	k: 9	n:410000
KS ci ratio: 4.189694e-02	ci left: 2.046671e-02	ci right 2.134495e-02	k: 8570	n:410000
ZNF782   410000 perm   145 sec   (2835 perm/sec)   p_kst 2.090244e-02   p_cons 2.195122e-05   p_joint 2.414634e-04

Joint ci ratio: 3.919529e-01	ci left: 1.915809e-04	ci right 2.869663e-04	k: 99	n:420000
Cons ci ratio: 1.239597e+00	ci left: 9.798553e-06	ci right 4.067771e-05	k: 9	n:420000
KS ci ratio: 4.135440e-02	ci left: 2.051192e-02	ci right 2.138042e-02	k: 8796	n:420000
ZNF782   420000 perm   150 sec   (2806 perm/sec)   p_kst 2.094286e-02   p_cons 2.142857e-05   p_joint 2.357143e-04

Joint ci ratio: 3.900083e-01	ci left: 1.892225e-04	ci right 2.828459e-04	k: 100	n:430000
Cons ci ratio: 1.239597e+00	ci left: 9.570678e-06	ci right 3.973173e-05	k: 9	n:430000
KS ci ratio: 4.092749e-02	ci left: 2.046069e-02	ci right 2.131788e-02	k: 8981	n:430000
ZNF782   430000 perm   155 sec   (2779 perm/sec)   p_kst 2.088605e-02   p_cons 2.093023e-05   p_joint 2.325581e-04

Joint ci ratio: 3.862034e-01	ci left: 1.890239e-04	ci right 2.814045e-04	k: 102	n:440000
Cons ci ratio: 1.181908e+00	ci left: 1.089866e-05	ci right 4.179587e-05	k: 10	n:440000
KS ci ratio: 4.043477e-02	ci left: 2.049059e-02	ci right 2.133846e-02	k: 9201	n:440000
ZNF782   440000 perm   160 sec   (2751 perm/sec)   p_kst 2.091136e-02   p_cons 2.272727e-05   p_joint 2.318182e-04

Joint ci ratio: 3.789152e-01	ci left: 1.928575e-04	ci right 2.848906e-04	k: 106	n:450000
Cons ci ratio: 1.181909e+00	ci left: 1.065647e-05	ci right 4.086708e-05	k: 10	n:450000
KS ci ratio: 3.997676e-02	ci left: 2.050163e-02	ci right 2.134011e-02	k: 9413	n:450000
ZNF782   450000 perm   165 sec   (2725 perm/sec)   p_kst 2.091778e-02   p_cons 2.222222e-05   p_joint 2.355556e-04

Joint ci ratio: 3.737122e-01	ci left: 1.945699e-04	ci right 2.858331e-04	k: 109	n:460000
Cons ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
KS ci ratio: 3.957598e-02	ci left: 2.046917e-02	ci right 2.129775e-02	k: 9605	n:460000
ZNF782   460000 perm   171 sec   (2697 perm/sec)   p_kst 2.088043e-02   p_cons 2.173913e-05   p_joint 2.369565e-04

Joint ci ratio: 4.355176e-01	ci left: 1.349704e-04	ci right 2.118401e-04	k: 80	n:470000
Cons ci ratio: 1.181909e+00	ci left: 1.020300e-05	ci right 3.912807e-05	k: 10	n:470000
KS ci ratio: 3.919723e-02	ci left: 2.042760e-02	ci right 2.124641e-02	k: 9792	n:470000
ZNF782   470000 perm   176 sec   (2670 perm/sec)   p_kst 2.083404e-02   p_cons 2.127660e-05   p_joint 1.702128e-04

Joint ci ratio: 4.328542e-01	ci left: 1.340140e-04	ci right 2.097365e-04	k: 81	n:480000
Cons ci ratio: 1.181910e+00	ci left: 9.990437e-06	ci right 3.831291e-05	k: 10	n:480000
KS ci ratio: 3.877958e-02	ci left: 2.043939e-02	ci right 2.124974e-02	k: 10004	n:480000
ZNF782   480000 perm   182 sec   (2643 perm/sec)   p_kst 2.084167e-02   p_cons 2.083333e-05   p_joint 1.687500e-04

Joint ci ratio: 4.276700e-01	ci left: 1.349186e-04	ci right 2.099773e-04	k: 83	n:490000
Cons ci ratio: 1.181910e+00	ci left: 9.786550e-06	ci right 3.753102e-05	k: 10	n:490000
KS ci ratio: 3.839995e-02	ci left: 2.042446e-02	ci right 2.122612e-02	k: 10203	n:490000
ZNF782   490000 perm   187 sec   (2617 perm/sec)   p_kst 2.082245e-02   p_cons 2.040816e-05   p_joint 1.693878e-04

Joint ci ratio: 4.276707e-01	ci left: 1.322202e-04	ci right 2.057779e-04	k: 83	n:500000
Cons ci ratio: 1.181910e+00	ci left: 9.590818e-06	ci right 3.678040e-05	k: 10	n:500000
KS ci ratio: 3.801634e-02	ci left: 2.042602e-02	ci right 2.121955e-02	k: 10410	n:500000
ZNF782   500000 perm   193 sec   (2590 perm/sec)   p_kst 2.082000e-02   p_cons 2.000000e-05   p_joint 1.660000e-04

Joint ci ratio: 4.251478e-01	ci left: 1.313779e-04	ci right 2.039131e-04	k: 84	n:510000
Cons ci ratio: 1.181911e+00	ci left: 9.402762e-06	ci right 3.605923e-05	k: 10	n:510000
KS ci ratio: 3.760964e-02	ci left: 2.046446e-02	ci right 2.125080e-02	k: 10636	n:510000
ZNF782   510000 perm   199 sec   (2564 perm/sec)   p_kst 2.085490e-02   p_cons 1.960784e-05   p_joint 1.647059e-04

Joint ci ratio: 4.226691e-01	ci left: 1.305693e-04	ci right 2.021188e-04	k: 85	n:520000
Cons ci ratio: 1.181911e+00	ci left: 9.221939e-06	ci right 3.536578e-05	k: 10	n:520000
KS ci ratio: 3.727007e-02	ci left: 2.044240e-02	ci right 2.122065e-02	k: 10831	n:520000
ZNF782   520000 perm   205 sec   (2539 perm/sec)   p_kst 2.082885e-02   p_cons 1.923077e-05   p_joint 1.634615e-04

Joint ci ratio: 4.178383e-01	ci left: 1.314802e-04	ci right 2.024757e-04	k: 87	n:530000
Cons ci ratio: 1.181911e+00	ci left: 9.047939e-06	ci right 3.469851e-05	k: 10	n:530000
KS ci ratio: 3.689344e-02	ci left: 2.047168e-02	ci right 2.124300e-02	k: 11053	n:530000
ZNF782   530000 perm   211 sec   (2514 perm/sec)   p_kst 2.085472e-02   p_cons 1.886792e-05   p_joint 1.641509e-04

Joint ci ratio: 4.064497e-01	ci left: 1.373447e-04	ci right 2.089401e-04	k: 92	n:540000
Cons ci ratio: 1.131593e+00	ci left: 1.016886e-05	ci right 3.644793e-05	k: 11	n:540000
KS ci ratio: 3.650155e-02	ci left: 2.052928e-02	ci right 2.129439e-02	k: 11291	n:540000
ZNF782   540000 perm   217 sec   (2490 perm/sec)   p_kst 2.090926e-02   p_cons 2.037037e-05   p_joint 1.703704e-04

Joint ci ratio: 4.021484e-01	ci left: 1.381141e-04	ci right 2.091454e-04	k: 94	n:550000
Cons ci ratio: 1.131593e+00	ci left: 9.983969e-06	ci right 3.578524e-05	k: 11	n:550000
KS ci ratio: 3.616035e-02	ci left: 2.054158e-02	ci right 2.129984e-02	k: 11505	n:550000
ZNF782   550000 perm   223 sec   (2466 perm/sec)   p_kst 2.091818e-02   p_cons 2.000000e-05   p_joint 1.709091e-04

Joint ci ratio: 4.410030e-01	ci left: 1.101011e-04	ci right 1.738319e-04	k: 78	n:560000
Cons ci ratio: 1.131593e+00	ci left: 9.805683e-06	ci right 3.514622e-05	k: 11	n:560000
KS ci ratio: 3.583478e-02	ci left: 2.054639e-02	ci right 2.129786e-02	k: 11715	n:560000
ZNF782   560000 perm   229 sec   (2443 perm/sec)   p_kst 2.091964e-02   p_cons 1.964286e-05   p_joint 1.392857e-04

Joint ci ratio: 4.410035e-01	ci left: 1.081695e-04	ci right 1.707822e-04	k: 78	n:570000
Cons ci ratio: 1.131594e+00	ci left: 9.633653e-06	ci right 3.452963e-05	k: 11	n:570000
KS ci ratio: 3.554222e-02	ci left: 2.052324e-02	ci right 2.126760e-02	k: 11909	n:570000
ZNF782   570000 perm   236 sec   (2420 perm/sec)   p_kst 2.089298e-02   p_cons 1.929825e-05   p_joint 1.368421e-04

Joint ci ratio: 5.238063e-01	ci left: 7.143789e-05	ci right 1.234294e-04	k: 55	n:580000
Cons ci ratio: 1.131594e+00	ci left: 9.467555e-06	ci right 3.393430e-05	k: 11	n:580000
KS ci ratio: 3.520475e-02	ci left: 2.056073e-02	ci right 2.129923e-02	k: 12138	n:580000
ZNF782   580000 perm   242 sec   (2397 perm/sec)   p_kst 2.092759e-02   p_cons 1.896552e-05   p_joint 9.482759e-05

Joint ci ratio: 3.737222e-01	ci left: 1.516979e-04	ci right 2.228541e-04	k: 109	n:590000
Cons ci ratio: 1.087199e+00	ci left: 1.050949e-05	ci right 3.552784e-05	k: 12	n:590000
KS ci ratio: 3.489401e-02	ci left: 2.057682e-02	ci right 2.130925e-02	k: 12355	n:590000
ZNF782   590000 perm   248 sec   (2374 perm/sec)   p_kst 2.094068e-02   p_cons 2.033898e-05   p_joint 1.847458e-04

Joint ci ratio: 3.703703e-01	ci left: 1.521912e-04	ci right 2.227835e-04	k: 111	n:600000
Cons ci ratio: 1.087200e+00	ci left: 1.033433e-05	ci right 3.493571e-05	k: 12	n:600000
KS ci ratio: 3.461808e-02	ci left: 2.056101e-02	ci right 2.128696e-02	k: 12553	n:600000
ZNF782   600000 perm   255 sec   (2352 perm/sec)   p_kst 2.092167e-02   p_cons 2.000000e-05   p_joint 1.850000e-04

Joint ci ratio: 3.639280e-01	ci left: 1.556488e-04	ci right 2.262909e-04	k: 115	n:610000
Cons ci ratio: 1.087200e+00	ci left: 1.016492e-05	ci right 3.436300e-05	k: 12	n:610000
KS ci ratio: 3.431563e-02	ci left: 2.058474e-02	ci right 2.130506e-02	k: 12775	n:610000
ZNF782   610000 perm   262 sec   (2331 perm/sec)   p_kst 2.094262e-02   p_cons 1.967213e-05   p_joint 1.885246e-04

Joint ci ratio: 3.959482e-01	ci left: 1.268735e-04	ci right 1.908544e-04	k: 97	n:620000
Cons ci ratio: 1.087200e+00	ci left: 1.000097e-05	ci right 3.380876e-05	k: 12	n:620000
KS ci ratio: 3.403836e-02	ci left: 2.058695e-02	ci right 2.130141e-02	k: 12984	n:620000
ZNF782   620000 perm   268 sec   (2310 perm/sec)   p_kst 2.094194e-02   p_cons 1.935484e-05   p_joint 1.564516e-04

Joint ci ratio: 3.939436e-01	ci left: 1.262893e-04	ci right 1.895692e-04	k: 98	n:630000
Cons ci ratio: 1.087200e+00	ci left: 9.842220e-06	ci right 3.327212e-05	k: 12	n:630000
KS ci ratio: 3.375203e-02	ci left: 2.060799e-02	ci right 2.131706e-02	k: 13205	n:630000
ZNF782   630000 perm   275 sec   (2291 perm/sec)   p_kst 2.096032e-02   p_cons 1.904762e-05   p_joint 1.555556e-04

Joint ci ratio: 5.018803e-01	ci left: 7.154187e-05	ci right 1.206732e-04	k: 60	n:640000
Cons ci ratio: 1.087200e+00	ci left: 9.688435e-06	ci right 3.275225e-05	k: 12	n:640000
KS ci ratio: 3.347535e-02	ci left: 2.062531e-02	ci right 2.132904e-02	k: 13424	n:640000
ZNF782   640000 perm   282 sec   (2272 perm/sec)   p_kst 2.097500e-02   p_cons 1.875000e-05   p_joint 9.375000e-05

Joint ci ratio: 4.938493e-01	ci left: 7.313160e-05	ci right 1.222771e-04	k: 62	n:650000
Cons ci ratio: 1.087201e+00	ci left: 9.539382e-06	ci right 3.224837e-05	k: 12	n:650000
KS ci ratio: 3.319915e-02	ci left: 2.064974e-02	ci right 2.134838e-02	k: 13648	n:650000
ZNF782   650000 perm   289 sec   (2253 perm/sec)   p_kst 2.099692e-02   p_cons 1.846154e-05   p_joint 9.538462e-05

Joint ci ratio: 4.938496e-01	ci left: 7.202353e-05	ci right 1.204245e-04	k: 62	n:660000
Cons ci ratio: 1.087201e+00	ci left: 9.394845e-06	ci right 3.175976e-05	k: 12	n:660000
KS ci ratio: 3.294788e-02	ci left: 2.065092e-02	ci right 2.134421e-02	k: 13857	n:660000
ZNF782   660000 perm   295 sec   (2234 perm/sec)   p_kst 2.099545e-02   p_cons 1.818182e-05   p_joint 9.393939e-05

Joint ci ratio: 4.938500e-01	ci left: 7.094854e-05	ci right 1.186271e-04	k: 62	n:670000
Cons ci ratio: 1.087201e+00	ci left: 9.254623e-06	ci right 3.128574e-05	k: 12	n:670000
KS ci ratio: 3.271411e-02	ci left: 2.063727e-02	ci right 2.132509e-02	k: 14056	n:670000
ZNF782   670000 perm   302 sec   (2215 perm/sec)   p_kst 2.097910e-02   p_cons 1.791045e-05   p_joint 9.253731e-05

Joint ci ratio: 4.938503e-01	ci left: 6.990517e-05	ci right 1.168826e-04	k: 62	n:680000
Cons ci ratio: 1.087201e+00	ci left: 9.118525e-06	ci right 3.082566e-05	k: 12	n:680000
KS ci ratio: 3.246780e-02	ci left: 2.064592e-02	ci right 2.132876e-02	k: 14270	n:680000
ZNF782   680000 perm   310 sec   (2197 perm/sec)   p_kst 2.098529e-02   p_cons 1.764706e-05   p_joint 9.117647e-05

Joint ci ratio: 4.899769e-01	ci left: 7.016146e-05	ci right 1.168164e-04	k: 63	n:690000
Cons ci ratio: 1.047653e+00	ci left: 1.003185e-05	ci right 3.221775e-05	k: 13	n:690000
KS ci ratio: 3.225997e-02	ci left: 2.061265e-02	ci right 2.128994e-02	k: 14455	n:690000
ZNF782   690000 perm   317 sec   (2178 perm/sec)   p_kst 2.094928e-02   p_cons 1.884058e-05   p_joint 9.130435e-05

Joint ci ratio: 4.899772e-01	ci left: 6.915914e-05	ci right 1.151476e-04	k: 63	n:700000
Cons ci ratio: 1.047653e+00	ci left: 9.888539e-06	ci right 3.175750e-05	k: 13	n:700000
KS ci ratio: 3.203821e-02	ci left: 2.060301e-02	ci right 2.127525e-02	k: 14656	n:700000
ZNF782   700000 perm   324 sec   (2159 perm/sec)   p_kst 2.093714e-02   p_cons 1.857143e-05   p_joint 9.000000e-05

Joint ci ratio: 4.899776e-01	ci left: 6.818506e-05	ci right 1.135259e-04	k: 63	n:710000
Cons ci ratio: 1.047653e+00	ci left: 9.749264e-06	ci right 3.131021e-05	k: 13	n:710000
KS ci ratio: 3.182095e-02	ci left: 2.059367e-02	ci right 2.126096e-02	k: 14857	n:710000
ZNF782   710000 perm   332 sec   (2142 perm/sec)   p_kst 2.092535e-02   p_cons 1.830986e-05   p_joint 8.873239e-05

Joint ci ratio: 4.861939e-01	ci left: 6.845593e-05	ci right 1.135077e-04	k: 64	n:720000
Cons ci ratio: 1.047653e+00	ci left: 9.613857e-06	ci right 3.087535e-05	k: 13	n:720000
KS ci ratio: 3.159949e-02	ci left: 2.059562e-02	ci right 2.125824e-02	k: 15066	n:720000
ZNF782   720000 perm   339 sec   (2125 perm/sec)   p_kst 2.092500e-02   p_cons 1.805556e-05   p_joint 8.888889e-05

Joint ci ratio: 5.334243e-01	ci left: 5.438489e-05	ci right 9.496511e-05	k: 53	n:730000
Cons ci ratio: 1.047653e+00	ci left: 9.482160e-06	ci right 3.045240e-05	k: 13	n:730000
KS ci ratio: 3.138154e-02	ci left: 2.059889e-02	ci right 2.125697e-02	k: 15276	n:730000
ZNF782   730000 perm   346 sec   (2108 perm/sec)   p_kst 2.092603e-02   p_cons 1.780822e-05   p_joint 7.260274e-05

Joint ci ratio: 5.334246e-01	ci left: 5.364996e-05	ci right 9.368181e-05	k: 53	n:740000
Cons ci ratio: 1.047653e+00	ci left: 9.354022e-06	ci right 3.004089e-05	k: 13	n:740000
KS ci ratio: 3.117214e-02	ci left: 2.059673e-02	ci right 2.125027e-02	k: 15482	n:740000
ZNF782   740000 perm   354 sec   (2092 perm/sec)   p_kst 2.092162e-02   p_cons 1.756757e-05   p_joint 7.162162e-05

Joint ci ratio: 5.334249e-01	ci left: 5.293462e-05	ci right 9.243273e-05	k: 53	n:750000
Cons ci ratio: 1.047654e+00	ci left: 9.229301e-06	ci right 2.964035e-05	k: 13	n:750000
KS ci ratio: 3.096991e-02	ci left: 2.059067e-02	ci right 2.123970e-02	k: 15685	n:750000
ZNF782   750000 perm   361 sec   (2076 perm/sec)   p_kst 2.091333e-02   p_cons 1.733333e-05   p_joint 7.066667e-05

Joint ci ratio: 4.718908e-01	ci left: 6.948047e-05	ci right 1.134279e-04	k: 68	n:760000
Cons ci ratio: 1.012129e+00	ci left: 1.007100e-05	ci right 3.090720e-05	k: 14	n:760000
KS ci ratio: 3.076959e-02	ci left: 2.058740e-02	ci right 2.123205e-02	k: 15890	n:760000
ZNF782   760000 perm   369 sec   (2060 perm/sec)   p_kst 2.090789e-02   p_cons 1.842105e-05   p_joint 8.947368e-05

Joint ci ratio: 4.651967e-01	ci left: 7.086876e-05	ci right 1.148568e-04	k: 70	n:770000
Cons ci ratio: 1.012129e+00	ci left: 9.940204e-06	ci right 3.050581e-05	k: 14	n:770000
KS ci ratio: 3.056244e-02	ci left: 2.059840e-02	ci right 2.123898e-02	k: 16106	n:770000
ZNF782   770000 perm   377 sec   (2045 perm/sec)   p_kst 2.091688e-02   p_cons 1.818182e-05   p_joint 9.090909e-05

Joint ci ratio: 4.587795e-01	ci left: 7.222576e-05	ci right 1.162449e-04	k: 72	n:780000
Cons ci ratio: 9.799893e-01	ci left: 1.076335e-05	ci right 3.171803e-05	k: 15	n:780000
KS ci ratio: 3.036511e-02	ci left: 2.060150e-02	ci right 2.123797e-02	k: 16316	n:780000
ZNF782   780000 perm   384 sec   (2029 perm/sec)   p_kst 2.091795e-02   p_cons 1.923077e-05   p_joint 9.230769e-05

Joint ci ratio: 4.526208e-01	ci left: 7.355249e-05	ci right 1.175938e-04	k: 74	n:790000
Cons ci ratio: 9.799895e-01	ci left: 1.062711e-05	ci right 3.131654e-05	k: 15	n:790000
KS ci ratio: 3.016504e-02	ci left: 2.061332e-02	ci right 2.124589e-02	k: 16533	n:790000
ZNF782   790000 perm   392 sec   (2014 perm/sec)   p_kst 2.092785e-02   p_cons 1.898734e-05   p_joint 9.367089e-05

Joint ci ratio: 4.526211e-01	ci left: 7.263307e-05	ci right 1.161239e-04	k: 74	n:800000
Cons ci ratio: 9.799896e-01	ci left: 1.049427e-05	ci right 3.092509e-05	k: 15	n:800000
KS ci ratio: 2.995609e-02	ci left: 2.064224e-02	ci right 2.127123e-02	k: 16764	n:800000
ZNF782   800000 perm   400 sec   (2000 perm/sec)   p_kst 2.095500e-02   p_cons 1.875000e-05   p_joint 9.250000e-05

Joint ci ratio: 4.526214e-01	ci left: 7.173636e-05	ci right 1.146903e-04	k: 74	n:810000
Cons ci ratio: 9.799897e-01	ci left: 1.036471e-05	ci right 3.054330e-05	k: 15	n:810000
KS ci ratio: 2.975946e-02	ci left: 2.065943e-02	ci right 2.128474e-02	k: 16986	n:810000
ZNF782   810000 perm   408 sec   (1985 perm/sec)   p_kst 2.097037e-02   p_cons 1.851852e-05   p_joint 9.135802e-05

Joint ci ratio: 4.496337e-01	ci left: 7.194244e-05	ci right 1.146489e-04	k: 75	n:820000
Cons ci ratio: 9.799898e-01	ci left: 1.023831e-05	ci right 3.017082e-05	k: 15	n:820000
KS ci ratio: 2.958247e-02	ci left: 2.065442e-02	ci right 2.127580e-02	k: 17190	n:820000
ZNF782   820000 perm   416 sec   (1970 perm/sec)   p_kst 2.096341e-02   p_cons 1.829268e-05   p_joint 9.146341e-05

Joint ci ratio: 4.496340e-01	ci left: 7.107565e-05	ci right 1.132676e-04	k: 75	n:830000
Cons ci ratio: 9.799900e-01	ci left: 1.011496e-05	ci right 2.980732e-05	k: 15	n:830000
KS ci ratio: 2.938359e-02	ci left: 2.068423e-02	ci right 2.130225e-02	k: 17423	n:830000
ZNF782   830000 perm   424 sec   (1956 perm/sec)   p_kst 2.099157e-02   p_cons 1.807229e-05   p_joint 9.036145e-05

Joint ci ratio: 4.467047e-01	ci left: 7.128559e-05	ci right 1.132432e-04	k: 76	n:840000
Cons ci ratio: 9.799901e-01	ci left: 9.994541e-06	ci right 2.945247e-05	k: 15	n:840000
KS ci ratio: 2.922249e-02	ci left: 2.066606e-02	ci right 2.128010e-02	k: 17616	n:840000
ZNF782   840000 perm   433 sec   (1942 perm/sec)   p_kst 2.097143e-02   p_cons 1.785714e-05   p_joint 9.047619e-05

Joint ci ratio: 4.410137e-01	ci left: 7.253685e-05	ci right 1.145252e-04	k: 78	n:850000
Cons ci ratio: 9.799902e-01	ci left: 9.876957e-06	ci right 2.910597e-05	k: 15	n:850000
KS ci ratio: 2.906152e-02	ci left: 2.065184e-02	ci right 2.126202e-02	k: 17812	n:850000
ZNF782   850000 perm   441 sec   (1928 perm/sec)   p_kst 2.095529e-02   p_cons 1.764706e-05   p_joint 9.176471e-05

Joint ci ratio: 4.355348e-01	ci left: 7.376232e-05	ci right 1.157742e-04	k: 80	n:860000
Cons ci ratio: 9.799903e-01	ci left: 9.762109e-06	ci right 2.876753e-05	k: 15	n:860000
KS ci ratio: 2.889662e-02	ci left: 2.064719e-02	ci right 2.125372e-02	k: 18016	n:860000
ZNF782   860000 perm   449 sec   (1914 perm/sec)   p_kst 2.094884e-02   p_cons 1.744186e-05   p_joint 9.302326e-05

Joint ci ratio: 4.355350e-01	ci left: 7.291447e-05	ci right 1.144435e-04	k: 80	n:870000
Cons ci ratio: 9.799904e-01	ci left: 9.649900e-06	ci right 2.843687e-05	k: 15	n:870000
KS ci ratio: 2.872725e-02	ci left: 2.065293e-02	ci right 2.125601e-02	k: 18229	n:870000
ZNF782   870000 perm   458 sec   (1901 perm/sec)   p_kst 2.095287e-02   p_cons 1.724138e-05   p_joint 9.195402e-05

Joint ci ratio: 4.302554e-01	ci left: 7.411093e-05	ci right 1.156619e-04	k: 82	n:880000
Cons ci ratio: 9.799905e-01	ci left: 9.540242e-06	ci right 2.811373e-05	k: 15	n:880000
KS ci ratio: 2.857349e-02	ci left: 2.064050e-02	ci right 2.123993e-02	k: 18426	n:880000
ZNF782   880000 perm   466 sec   (1888 perm/sec)   p_kst 2.093864e-02   p_cons 1.704545e-05   p_joint 9.318182e-05

Joint ci ratio: 4.276866e-01	ci left: 7.428048e-05	ci right 1.156066e-04	k: 83	n:890000
Cons ci ratio: 9.799906e-01	ci left: 9.433048e-06	ci right 2.779785e-05	k: 15	n:890000
KS ci ratio: 2.841126e-02	ci left: 2.064397e-02	ci right 2.124005e-02	k: 18637	n:890000
ZNF782   890000 perm   475 sec   (1875 perm/sec)   p_kst 2.094045e-02   p_cons 1.685393e-05   p_joint 9.325843e-05

Joint ci ratio: 4.276869e-01	ci left: 7.345513e-05	ci right 1.143221e-04	k: 83	n:900000
Cons ci ratio: 9.799907e-01	ci left: 9.328236e-06	ci right 2.748898e-05	k: 15	n:900000
KS ci ratio: 2.824794e-02	ci left: 2.065290e-02	ci right 2.124575e-02	k: 18853	n:900000
ZNF782   900000 perm   483 sec   (1862 perm/sec)   p_kst 2.094778e-02   p_cons 1.666667e-05   p_joint 9.222222e-05

Joint ci ratio: 4.251636e-01	ci left: 7.362888e-05	ci right 1.142819e-04	k: 84	n:910000
Cons ci ratio: 9.799908e-01	ci left: 9.225727e-06	ci right 2.718691e-05	k: 15	n:910000
KS ci ratio: 2.810623e-02	ci left: 2.063435e-02	ci right 2.122365e-02	k: 19044	n:910000
ZNF782   910000 perm   492 sec   (1848 perm/sec)   p_kst 2.092747e-02   p_cons 1.648352e-05   p_joint 9.230769e-05

Joint ci ratio: 4.226845e-01	ci left: 7.379954e-05	ci right 1.142420e-04	k: 85	n:920000
Cons ci ratio: 9.799909e-01	ci left: 9.125448e-06	ci right 2.689140e-05	k: 15	n:920000
KS ci ratio: 2.797331e-02	ci left: 2.060650e-02	ci right 2.119218e-02	k: 19226	n:920000
ZNF782   920000 perm   501 sec   (1836 perm/sec)   p_kst 2.089783e-02   p_cons 1.630435e-05   p_joint 9.239130e-05

Joint ci ratio: 4.226847e-01	ci left: 7.300599e-05	ci right 1.130136e-04	k: 85	n:930000
Cons ci ratio: 9.799910e-01	ci left: 9.027324e-06	ci right 2.660225e-05	k: 15	n:930000
KS ci ratio: 2.779403e-02	ci left: 2.064974e-02	ci right 2.123282e-02	k: 19474	n:930000
ZNF782   930000 perm   510 sec   (1823 perm/sec)   p_kst 2.093978e-02   p_cons 1.612903e-05   p_joint 9.139785e-05

Joint ci ratio: 4.202484e-01	ci left: 7.318031e-05	ci right 1.129874e-04	k: 86	n:940000
Cons ci ratio: 9.799911e-01	ci left: 8.931288e-06	ci right 2.631925e-05	k: 15	n:940000
KS ci ratio: 2.764179e-02	ci left: 2.065720e-02	ci right 2.123725e-02	k: 19689	n:940000
ZNF782   940000 perm   519 sec   (1811 perm/sec)   p_kst 2.094574e-02   p_cons 1.595745e-05   p_joint 9.148936e-05

Joint ci ratio: 3.623816e-01	ci left: 1.008990e-04	ci right 1.464518e-04	k: 116	n:950000
Cons ci ratio: 9.507306e-01	ci left: 9.626748e-06	ci right 2.735038e-05	k: 16	n:950000
KS ci ratio: 2.748779e-02	ci left: 2.067078e-02	ci right 2.124793e-02	k: 19910	n:950000
ZNF782   950000 perm   528 sec   (1799 perm/sec)   p_kst 2.095789e-02   p_cons 1.684211e-05   p_joint 1.221053e-04

Joint ci ratio: 3.593234e-01	ci left: 1.017424e-04	ci right 1.471977e-04	k: 118	n:960000
Cons ci ratio: 9.507307e-01	ci left: 9.526469e-06	ci right 2.706548e-05	k: 16	n:960000
KS ci ratio: 2.734604e-02	ci left: 2.066961e-02	ci right 2.124370e-02	k: 20117	n:960000
ZNF782   960000 perm   537 sec   (1787 perm/sec)   p_kst 2.095521e-02   p_cons 1.666667e-05   p_joint 1.229167e-04

Joint ci ratio: 3.563412e-01	ci left: 1.025700e-04	ci right 1.479266e-04	k: 120	n:970000
Cons ci ratio: 9.507308e-01	ci left: 9.428258e-06	ci right 2.678646e-05	k: 16	n:970000
KS ci ratio: 2.719691e-02	ci left: 2.068280e-02	ci right 2.125408e-02	k: 20338	n:970000
ZNF782   970000 perm   546 sec   (1775 perm/sec)   p_kst 2.096701e-02   p_cons 1.649485e-05   p_joint 1.237113e-04

Joint ci ratio: 3.520039e-01	ci left: 1.043123e-04	ci right 1.497496e-04	k: 123	n:980000
Cons ci ratio: 9.507309e-01	ci left: 9.332051e-06	ci right 2.651313e-05	k: 16	n:980000
KS ci ratio: 2.705959e-02	ci left: 2.068155e-02	ci right 2.124986e-02	k: 20545	n:980000
ZNF782   980000 perm   556 sec   (1764 perm/sec)   p_kst 2.096429e-02   p_cons 1.632653e-05   p_joint 1.255102e-04

Joint ci ratio: 3.491990e-01	ci left: 1.051010e-04	ci right 1.504344e-04	k: 125	n:990000
Cons ci ratio: 9.507310e-01	ci left: 9.237787e-06	ci right 2.624532e-05	k: 16	n:990000
KS ci ratio: 2.693296e-02	ci left: 2.066728e-02	ci right 2.123250e-02	k: 20739	n:990000
ZNF782   990000 perm   565 sec   (1752 perm/sec)   p_kst 2.094848e-02   p_cons 1.616162e-05   p_joint 1.262626e-04

Joint ci ratio: 3.464600e-01	ci left: 1.058752e-04	ci right 1.511041e-04	k: 127	n:1000000
Cons ci ratio: 9.507311e-01	ci left: 9.145409e-06	ci right 2.598287e-05	k: 16	n:1000000
KS ci ratio: 2.680024e-02	ci left: 2.066522e-02	ci right 2.122756e-02	k: 20945	n:1000000
ZNF782   1000000 perm   574 sec   (1741 perm/sec)   p_kst 2.094500e-02   p_cons 1.600000e-05   p_joint 1.270000e-04

Joint ci ratio: 3.424696e-01	ci left: 1.075404e-04	ci right 1.528342e-04	k: 130	n:1010000
Cons ci ratio: 9.507312e-01	ci left: 9.054860e-06	ci right 2.572561e-05	k: 16	n:1010000
KS ci ratio: 2.666946e-02	ci left: 2.066321e-02	ci right 2.122271e-02	k: 21151	n:1010000
ZNF782   1010000 perm   584 sec   (1730 perm/sec)   p_kst 2.094158e-02   p_cons 1.584158e-05   p_joint 1.287129e-04

Joint ci ratio: 2.778542e-01	ci left: 1.680216e-04	ci right 2.231177e-04	k: 198	n:1020000
Cons ci ratio: 8.993009e-01	ci left: 1.045880e-05	ci right 2.788982e-05	k: 18	n:1020000
KS ci ratio: 2.654566e-02	ci left: 2.065346e-02	ci right 2.121005e-02	k: 21349	n:1020000
ZNF782   1020000 perm   594 sec   (1718 perm/sec)   p_kst 2.093039e-02   p_cons 1.764706e-05   p_joint 1.941176e-04

Joint ci ratio: 2.744276e-01	ci left: 1.709086e-04	ci right 2.261411e-04	k: 203	n:1030000
Cons ci ratio: 8.993009e-01	ci left: 1.035726e-05	ci right 2.761904e-05	k: 18	n:1030000
KS ci ratio: 2.640855e-02	ci left: 2.066705e-02	ci right 2.122109e-02	k: 21571	n:1030000
ZNF782   1030000 perm   603 sec   (1707 perm/sec)   p_kst 2.094272e-02   p_cons 1.747573e-05   p_joint 1.970874e-04

Joint ci ratio: 2.737576e-01	ci left: 1.701607e-04	ci right 2.249941e-04	k: 204	n:1040000
Cons ci ratio: 8.993010e-01	ci left: 1.025767e-05	ci right 2.735348e-05	k: 18	n:1040000
KS ci ratio: 2.628586e-02	ci left: 2.066127e-02	ci right 2.121255e-02	k: 21773	n:1040000
ZNF782   1040000 perm   613 sec   (1696 perm/sec)   p_kst 2.093558e-02   p_cons 1.730769e-05   p_joint 1.961538e-04

Joint ci ratio: 2.724318e-01	ci left: 1.703145e-04	ci right 2.248862e-04	k: 206	n:1050000
Cons ci ratio: 8.993011e-01	ci left: 1.015997e-05	ci right 2.709297e-05	k: 18	n:1050000
KS ci ratio: 2.616426e-02	ci left: 2.065657e-02	ci right 2.120513e-02	k: 21976	n:1050000
ZNF782   1050000 perm   623 sec   (1684 perm/sec)   p_kst 2.092952e-02   p_cons 1.714286e-05   p_joint 1.961905e-04

Joint ci ratio: 2.514392e-01	ci left: 2.004442e-04	ci right 2.589476e-04	k: 242	n:1060000
Cons ci ratio: 8.765300e-01	ci left: 1.079177e-05	ci right 2.799123e-05	k: 19	n:1060000
KS ci ratio: 2.602935e-02	ci left: 2.067539e-02	ci right 2.122158e-02	k: 22204	n:1060000
ZNF782   1060000 perm   634 sec   (1673 perm/sec)   p_kst 2.094717e-02   p_cons 1.792453e-05   p_joint 2.283019e-04

Joint ci ratio: 2.499012e-01	ci left: 2.011986e-04	ci right 2.595070e-04	k: 245	n:1070000
Cons ci ratio: 8.765300e-01	ci left: 1.069091e-05	ci right 2.772963e-05	k: 19	n:1070000
KS ci ratio: 2.591362e-02	ci left: 2.066693e-02	ci right 2.121043e-02	k: 22403	n:1070000
ZNF782   1070000 perm   644 sec   (1663 perm/sec)   p_kst 2.093738e-02   p_cons 1.775701e-05   p_joint 2.289720e-04

Joint ci ratio: 4.226874e-01	ci left: 6.286619e-05	ci right 9.731744e-05	k: 85	n:1080000
Cons ci ratio: 8.765301e-01	ci left: 1.059192e-05	ci right 2.747288e-05	k: 19	n:1080000
KS ci ratio: 2.579301e-02	ci left: 2.066876e-02	ci right 2.120974e-02	k: 22613	n:1080000
ZNF782   1080000 perm   654 sec   (1652 perm/sec)   p_kst 2.093796e-02   p_cons 1.759259e-05   p_joint 7.870370e-05

Joint ci ratio: 4.226876e-01	ci left: 6.228943e-05	ci right 9.642463e-05	k: 85	n:1090000
Cons ci ratio: 8.765302e-01	ci left: 1.049475e-05	ci right 2.722083e-05	k: 19	n:1090000
KS ci ratio: 2.566890e-02	ci left: 2.067876e-02	ci right 2.121737e-02	k: 22832	n:1090000
ZNF782   1090000 perm   664 sec   (1641 perm/sec)   p_kst 2.094679e-02   p_cons 1.743119e-05   p_joint 7.798165e-05

Joint ci ratio: 4.202513e-01	ci left: 6.253582e-05	ci right 9.655302e-05	k: 86	n:1100000
Cons ci ratio: 8.765303e-01	ci left: 1.039934e-05	ci right 2.697337e-05	k: 19	n:1100000
KS ci ratio: 2.554827e-02	ci left: 2.068588e-02	ci right 2.122210e-02	k: 23048	n:1100000
ZNF782   1100000 perm   674 sec   (1631 perm/sec)   p_kst 2.095273e-02   p_cons 1.727273e-05   p_joint 7.818182e-05

Joint ci ratio: 4.178567e-01	ci left: 6.277833e-05	ci right 9.667856e-05	k: 87	n:1110000
Cons ci ratio: 8.765304e-01	ci left: 1.030565e-05	ci right 2.673037e-05	k: 19	n:1110000
KS ci ratio: 2.543658e-02	ci left: 2.068124e-02	ci right 2.121496e-02	k: 23251	n:1110000
ZNF782   1110000 perm   685 sec   (1621 perm/sec)   p_kst 2.094685e-02   p_cons 1.711712e-05   p_joint 7.837838e-05

Joint ci ratio: 2.426135e-01	ci left: 2.047831e-04	ci right 2.621393e-04	k: 260	n:1120000
Cons ci ratio: 8.554057e-01	ci left: 1.090764e-05	ci right 2.757877e-05	k: 20	n:1120000
KS ci ratio: 2.531917e-02	ci left: 2.068822e-02	ci right 2.121962e-02	k: 23467	n:1120000
ZNF782   1120000 perm   695 sec   (1610 perm/sec)   p_kst 2.095268e-02   p_cons 1.785714e-05   p_joint 2.321429e-04

Joint ci ratio: 2.421502e-01	ci left: 2.038021e-04	ci right 2.607581e-04	k: 261	n:1130000
Cons ci ratio: 8.554058e-01	ci left: 1.081111e-05	ci right 2.733472e-05	k: 20	n:1130000
KS ci ratio: 2.520881e-02	ci left: 2.068629e-02	ci right 2.121529e-02	k: 23673	n:1130000
ZNF782   1130000 perm   706 sec   (1600 perm/sec)   p_kst 2.094956e-02   p_cons 1.769912e-05   p_joint 2.309735e-04

Joint ci ratio: 2.412313e-01	ci left: 2.036625e-04	ci right 2.603312e-04	k: 263	n:1140000
Cons ci ratio: 8.554059e-01	ci left: 1.071628e-05	ci right 2.709494e-05	k: 20	n:1140000
KS ci ratio: 2.508808e-02	ci left: 2.070357e-02	ci right 2.123045e-02	k: 23901	n:1140000
ZNF782   1140000 perm   717 sec   (1591 perm/sec)   p_kst 2.096579e-02   p_cons 1.754386e-05   p_joint 2.307018e-04

Joint ci ratio: 1.589349e-01	ci left: 4.866756e-04	ci right 5.715251e-04	k: 607	n:1150000
Cons ci ratio: 8.357385e-01	ci left: 1.130380e-05	ci right 2.791354e-05	k: 21	n:1150000
KS ci ratio: 2.496432e-02	ci left: 2.072834e-02	ci right 2.125321e-02	k: 24138	n:1150000
ZNF782   1150000 perm   727 sec   (1581 perm/sec)   p_kst 2.098957e-02   p_cons 1.826087e-05   p_joint 5.278261e-04

Joint ci ratio: 1.584147e-01	ci left: 4.857915e-04	ci right 5.701832e-04	k: 611	n:1160000
Cons ci ratio: 8.357385e-01	ci left: 1.120635e-05	ci right 2.767291e-05	k: 21	n:1160000
KS ci ratio: 2.485122e-02	ci left: 2.073812e-02	ci right 2.126082e-02	k: 24358	n:1160000
ZNF782   1160000 perm   738 sec   (1572 perm/sec)   p_kst 2.099828e-02   p_cons 1.810345e-05   p_joint 5.267241e-04

Joint ci ratio: 1.577716e-01	ci left: 4.857438e-04	ci right 5.697523e-04	k: 616	n:1170000
Cons ci ratio: 8.357386e-01	ci left: 1.111057e-05	ci right 2.743639e-05	k: 21	n:1170000
KS ci ratio: 2.473245e-02	ci left: 2.075964e-02	ci right 2.128034e-02	k: 24592	n:1170000
ZNF782   1170000 perm   749 sec   (1563 perm/sec)   p_kst 2.101880e-02   p_cons 1.794872e-05   p_joint 5.264957e-04

Joint ci ratio: 1.571362e-01	ci left: 4.856977e-04	ci right 5.693280e-04	k: 621	n:1180000
Cons ci ratio: 8.357387e-01	ci left: 1.101641e-05	ci right 2.720388e-05	k: 21	n:1180000
KS ci ratio: 2.462803e-02	ci left: 2.075973e-02	ci right 2.127821e-02	k: 24801	n:1180000
ZNF782   1180000 perm   759 sec   (1554 perm/sec)   p_kst 2.101780e-02   p_cons 1.779661e-05   p_joint 5.262712e-04

Joint ci ratio: 1.496231e-01	ci left: 5.333358e-04	ci right 6.203853e-04	k: 685	n:1190000
Cons ci ratio: 8.173683e-01	ci left: 1.158599e-05	ci right 2.799001e-05	k: 22	n:1190000
KS ci ratio: 2.453195e-02	ci left: 2.074814e-02	ci right 2.126428e-02	k: 24996	n:1190000
ZNF782   1190000 perm   770 sec   (1545 perm/sec)   p_kst 2.100504e-02   p_cons 1.848739e-05   p_joint 5.756303e-04

Joint ci ratio: 1.490808e-01	ci left: 5.329023e-04	ci right 6.195377e-04	k: 690	n:1200000
Cons ci ratio: 8.173683e-01	ci left: 1.148944e-05	ci right 2.775676e-05	k: 22	n:1200000
KS ci ratio: 2.443747e-02	ci left: 2.073591e-02	ci right 2.124973e-02	k: 25190	n:1200000
ZNF782   1200000 perm   781 sec   (1537 perm/sec)   p_kst 2.099167e-02   p_cons 1.833333e-05   p_joint 5.750000e-04

Joint ci ratio: 1.470717e-01	ci left: 5.436191e-04	ci right 6.307011e-04	k: 709	n:1210000
Cons ci ratio: 8.001584e-01	ci left: 1.204965e-05	ci right 2.852159e-05	k: 23	n:1210000
KS ci ratio: 2.434113e-02	ci left: 2.072882e-02	ci right 2.124042e-02	k: 25390	n:1210000
ZNF782   1210000 perm   792 sec   (1528 perm/sec)   p_kst 2.098347e-02   p_cons 1.900826e-05   p_joint 5.859504e-04

Joint ci ratio: 1.468653e-01	ci left: 5.407422e-04	ci right 6.272311e-04	k: 711	n:1220000
Cons ci ratio: 8.001585e-01	ci left: 1.195088e-05	ci right 2.828781e-05	k: 23	n:1220000
KS ci ratio: 2.425126e-02	ci left: 2.071289e-02	ci right 2.122217e-02	k: 25579	n:1220000
ZNF782   1220000 perm   803 sec   (1519 perm/sec)   p_kst 2.096639e-02   p_cons 1.885246e-05   p_joint 5.827869e-04

Joint ci ratio: 1.464546e-01	ci left: 5.394786e-04	ci right 6.255030e-04	k: 715	n:1230000
Cons ci ratio: 8.001585e-01	ci left: 1.185372e-05	ci right 2.805783e-05	k: 23	n:1230000
KS ci ratio: 2.415949e-02	ci left: 2.070207e-02	ci right 2.120913e-02	k: 25774	n:1230000
ZNF782   1230000 perm   814 sec   (1511 perm/sec)   p_kst 2.095447e-02   p_cons 1.869919e-05   p_joint 5.813008e-04

Joint ci ratio: 1.461489e-01	ci left: 5.374587e-04	ci right 6.229665e-04	k: 718	n:1240000
Cons ci ratio: 8.001586e-01	ci left: 1.175812e-05	ci right 2.783156e-05	k: 23	n:1240000
KS ci ratio: 2.406592e-02	ci left: 2.069623e-02	ci right 2.120117e-02	k: 25975	n:1240000
ZNF782   1240000 perm   825 sec   (1502 perm/sec)   p_kst 2.094758e-02   p_cons 1.854839e-05   p_joint 5.790323e-04

Joint ci ratio: 1.460476e-01	ci left: 5.339297e-04	ci right 6.188121e-04	k: 719	n:1250000
Cons ci ratio: 8.001586e-01	ci left: 1.166406e-05	ci right 2.760891e-05	k: 23	n:1250000
KS ci ratio: 2.395708e-02	ci left: 2.071833e-02	ci right 2.122149e-02	k: 26211	n:1250000
ZNF782   1250000 perm   837 sec   (1494 perm/sec)   p_kst 2.096880e-02   p_cons 1.840000e-05   p_joint 5.752000e-04

Joint ci ratio: 1.457445e-01	ci left: 5.319862e-04	ci right 6.163688e-04	k: 722	n:1260000
Cons ci ratio: 8.001587e-01	ci left: 1.157148e-05	ci right 2.738979e-05	k: 23	n:1260000
KS ci ratio: 2.385385e-02	ci left: 2.073299e-02	ci right 2.123430e-02	k: 26438	n:1260000
ZNF782   1260000 perm   849 sec   (1485 perm/sec)   p_kst 2.098254e-02   p_cons 1.825397e-05   p_joint 5.730159e-04

Joint ci ratio: 1.512899e-01	ci left: 4.883726e-04	ci right 5.690517e-04	k: 670	n:1270000
Cons ci ratio: 8.001588e-01	ci left: 1.148037e-05	ci right 2.717412e-05	k: 23	n:1270000
KS ci ratio: 2.375649e-02	ci left: 2.073958e-02	ci right 2.123898e-02	k: 26655	n:1270000
ZNF782   1270000 perm   860 sec   (1476 perm/sec)   p_kst 2.098819e-02   p_cons 1.811024e-05   p_joint 5.275591e-04

Joint ci ratio: 1.323236e-01	ci left: 6.398134e-04	ci right 7.312204e-04	k: 876	n:1280000
Cons ci ratio: 7.839920e-01	ci left: 1.201351e-05	ci right 2.789839e-05	k: 24	n:1280000
KS ci ratio: 2.366391e-02	ci left: 2.073987e-02	ci right 2.123730e-02	k: 26864	n:1280000
ZNF782   1280000 perm   872 sec   (1468 perm/sec)   p_kst 2.098750e-02   p_cons 1.875000e-05   p_joint 6.843750e-04

Joint ci ratio: 1.320230e-01	ci left: 6.378518e-04	ci right 7.287553e-04	k: 880	n:1290000
Cons ci ratio: 7.839921e-01	ci left: 1.192039e-05	ci right 2.768212e-05	k: 24	n:1290000
KS ci ratio: 2.357018e-02	ci left: 2.074401e-02	ci right 2.123954e-02	k: 27078	n:1290000
ZNF782   1290000 perm   884 sec   (1459 perm/sec)   p_kst 2.099070e-02   p_cons 1.860465e-05   p_joint 6.821705e-04

Joint ci ratio: 1.312062e-01	ci left: 6.411283e-04	ci right 7.318894e-04	k: 891	n:1300000
Cons ci ratio: 7.687673e-01	ci left: 1.244518e-05	ci right 2.838828e-05	k: 25	n:1300000
KS ci ratio: 2.347667e-02	ci left: 2.074962e-02	ci right 2.124329e-02	k: 27294	n:1300000
ZNF782   1300000 perm   896 sec   (1451 perm/sec)   p_kst 2.099538e-02   p_cons 1.923077e-05   p_joint 6.853846e-04

Joint ci ratio: 1.307672e-01	ci left: 6.406642e-04	ci right 7.310326e-04	k: 897	n:1310000
Cons ci ratio: 7.687673e-01	ci left: 1.235018e-05	ci right 2.817158e-05	k: 25	n:1310000
KS ci ratio: 2.337863e-02	ci left: 2.076501e-02	ci right 2.125696e-02	k: 27523	n:1310000
ZNF782   1310000 perm   908 sec   (1443 perm/sec)   p_kst 2.100992e-02   p_cons 1.908397e-05   p_joint 6.847328e-04

Joint ci ratio: 1.302605e-01	ci left: 6.409406e-04	ci right 7.309705e-04	k: 904	n:1320000
Cons ci ratio: 7.687674e-01	ci left: 1.225661e-05	ci right 2.795816e-05	k: 25	n:1320000
KS ci ratio: 2.330154e-02	ci left: 2.074552e-02	ci right 2.123537e-02	k: 27706	n:1320000
ZNF782   1320000 perm   920 sec   (1435 perm/sec)   p_kst 2.098939e-02   p_cons 1.893939e-05   p_joint 6.848485e-04

Joint ci ratio: 1.361047e-01	ci left: 5.808804e-04	ci right 6.664313e-04	k: 828	n:1330000
Cons ci ratio: 7.687674e-01	ci left: 1.216446e-05	ci right 2.774794e-05	k: 25	n:1330000
KS ci ratio: 2.320228e-02	ci left: 2.076670e-02	ci right 2.125493e-02	k: 27943	n:1330000
ZNF782   1330000 perm   932 sec   (1427 perm/sec)   p_kst 2.100977e-02   p_cons 1.879699e-05   p_joint 6.225564e-04

Joint ci ratio: 1.383785e-01	ci left: 5.570875e-04	ci right 6.406179e-04	k: 801	n:1340000
Cons ci ratio: 7.687675e-01	ci left: 1.207368e-05	ci right 2.754087e-05	k: 25	n:1340000
KS ci ratio: 2.312062e-02	ci left: 2.075863e-02	ci right 2.124493e-02	k: 28141	n:1340000
ZNF782   1340000 perm   944 sec   (1419 perm/sec)   p_kst 2.100075e-02   p_cons 1.865672e-05   p_joint 5.977612e-04

Joint ci ratio: 1.379492e-01	ci left: 5.565366e-04	ci right 6.397043e-04	k: 806	n:1350000
Cons ci ratio: 7.687676e-01	ci left: 1.198424e-05	ci right 2.733687e-05	k: 25	n:1350000
KS ci ratio: 2.303069e-02	ci left: 2.076689e-02	ci right 2.125146e-02	k: 28361	n:1350000
ZNF782   1350000 perm   956 sec   (1411 perm/sec)   p_kst 2.100815e-02   p_cons 1.851852e-05   p_joint 5.970370e-04

Joint ci ratio: 1.377788e-01	ci left: 5.538642e-04	ci right 6.365219e-04	k: 808	n:1360000
Cons ci ratio: 7.687676e-01	ci left: 1.189612e-05	ci right 2.713586e-05	k: 25	n:1360000
KS ci ratio: 2.294220e-02	ci left: 2.077430e-02	ci right 2.125716e-02	k: 28580	n:1360000
ZNF782   1360000 perm   969 sec   (1404 perm/sec)   p_kst 2.101471e-02   p_cons 1.838235e-05   p_joint 5.941176e-04

Joint ci ratio: 1.373551e-01	ci left: 5.533454e-04	ci right 6.356509e-04	k: 813	n:1370000
Cons ci ratio: 7.687677e-01	ci left: 1.180929e-05	ci right 2.693779e-05	k: 25	n:1370000
KS ci ratio: 2.285554e-02	ci left: 2.078015e-02	ci right 2.126130e-02	k: 28797	n:1370000
ZNF782   1370000 perm   981 sec   (1397 perm/sec)   p_kst 2.101971e-02   p_cons 1.824818e-05   p_joint 5.934307e-04

Joint ci ratio: 1.371028e-01	ci left: 5.514349e-04	ci right 6.332933e-04	k: 816	n:1380000
Cons ci ratio: 7.687677e-01	ci left: 1.172372e-05	ci right 2.674259e-05	k: 25	n:1380000
KS ci ratio: 2.277146e-02	ci left: 2.078303e-02	ci right 2.126246e-02	k: 29010	n:1380000
ZNF782   1380000 perm   993 sec   (1389 perm/sec)   p_kst 2.102174e-02   p_cons 1.811594e-05   p_joint 5.913043e-04

Joint ci ratio: 1.381218e-01	ci left: 5.391317e-04	ci right 6.198074e-04	k: 804	n:1390000
Cons ci ratio: 7.687678e-01	ci left: 1.163937e-05	ci right 2.655020e-05	k: 25	n:1390000
KS ci ratio: 2.268949e-02	ci left: 2.078374e-02	ci right 2.126143e-02	k: 29220	n:1390000
ZNF782   1390000 perm   1006 sec   (1382 perm/sec)   p_kst 2.102158e-02   p_cons 1.798561e-05   p_joint 5.784173e-04

Joint ci ratio: 1.361069e-01	ci left: 5.518358e-04	ci right 6.331104e-04	k: 828	n:1400000
Cons ci ratio: 7.543968e-01	ci left: 1.213151e-05	ci right 2.721133e-05	k: 26	n:1400000
KS ci ratio: 2.259938e-02	ci left: 2.080077e-02	ci right 2.127693e-02	k: 29453	n:1400000
ZNF782   1400000 perm   1018 sec   (1375 perm/sec)   p_kst 2.103786e-02   p_cons 1.857143e-05   p_joint 5.914286e-04

Joint ci ratio: 1.355358e-01	ci left: 5.527179e-04	ci right 6.337534e-04	k: 835	n:1410000
Cons ci ratio: 7.543969e-01	ci left: 1.204547e-05	ci right 2.701834e-05	k: 26	n:1410000
KS ci ratio: 2.252701e-02	ci left: 2.078724e-02	ci right 2.126154e-02	k: 29643	n:1410000
ZNF782   1410000 perm   1031 sec   (1368 perm/sec)   p_kst 2.102340e-02   p_cons 1.843972e-05   p_joint 5.921986e-04

Joint ci ratio: 1.350520e-01	ci left: 5.529079e-04	ci right 6.336586e-04	k: 841	n:1420000
Cons ci ratio: 7.543969e-01	ci left: 1.196064e-05	ci right 2.682807e-05	k: 26	n:1420000
KS ci ratio: 2.244841e-02	ci left: 2.078650e-02	ci right 2.125912e-02	k: 29851	n:1420000
ZNF782   1420000 perm   1043 sec   (1361 perm/sec)   p_kst 2.102183e-02   p_cons 1.830986e-05   p_joint 5.922535e-04

Joint ci ratio: 1.376957e-01	ci left: 5.274267e-04	ci right 6.060875e-04	k: 809	n:1430000
Cons ci ratio: 7.543970e-01	ci left: 1.187700e-05	ci right 2.664046e-05	k: 26	n:1430000
KS ci ratio: 2.237557e-02	ci left: 2.077674e-02	ci right 2.124758e-02	k: 30046	n:1430000
ZNF782   1430000 perm   1056 sec   (1354 perm/sec)   p_kst 2.101119e-02   p_cons 1.818182e-05   p_joint 5.657343e-04

Joint ci ratio: 1.369369e-01	ci left: 5.297994e-04	ci right 6.083431e-04	k: 818	n:1440000
Cons ci ratio: 7.543970e-01	ci left: 1.179452e-05	ci right 2.645546e-05	k: 26	n:1440000
KS ci ratio: 2.229289e-02	ci left: 2.078646e-02	ci right 2.125575e-02	k: 30269	n:1440000
ZNF782   1440000 perm   1069 sec   (1347 perm/sec)   p_kst 2.102014e-02   p_cons 1.805556e-05   p_joint 5.680556e-04

Joint ci ratio: 1.368536e-01	ci left: 5.268115e-04	ci right 6.048609e-04	k: 819	n:1450000
Cons ci ratio: 7.543971e-01	ci left: 1.171318e-05	ci right 2.627301e-05	k: 26	n:1450000
KS ci ratio: 2.221336e-02	ci left: 2.079192e-02	ci right 2.125965e-02	k: 30486	n:1450000
ZNF782   1450000 perm   1083 sec   (1339 perm/sec)   p_kst 2.102483e-02   p_cons 1.793103e-05   p_joint 5.648276e-04

Joint ci ratio: 1.304814e-01	ci left: 5.774915e-04	ci right 6.587572e-04	k: 901	n:1460000
Cons ci ratio: 7.408030e-01	ci left: 1.218714e-05	ci right 2.690645e-05	k: 27	n:1460000
KS ci ratio: 2.213283e-02	ci left: 2.080073e-02	ci right 2.126693e-02	k: 30708	n:1460000
ZNF782   1460000 perm   1096 sec   (1332 perm/sec)   p_kst 2.103288e-02   p_cons 1.849315e-05   p_joint 6.171233e-04

Joint ci ratio: 1.299779e-01	ci left: 5.781698e-04	ci right 6.591928e-04	k: 908	n:1470000
Cons ci ratio: 7.408031e-01	ci left: 1.210423e-05	ci right 2.672341e-05	k: 27	n:1470000
KS ci ratio: 2.206046e-02	ci left: 2.079588e-02	ci right 2.126043e-02	k: 30910	n:1470000
ZNF782   1470000 perm   1109 sec   (1326 perm/sec)   p_kst 2.102721e-02   p_cons 1.836735e-05   p_joint 6.176871e-04

Joint ci ratio: 1.293391e-01	ci left: 5.801471e-04	ci right 6.610170e-04	k: 917	n:1480000
Cons ci ratio: 7.408031e-01	ci left: 1.202245e-05	ci right 2.654285e-05	k: 27	n:1480000
KS ci ratio: 2.198446e-02	ci left: 2.079917e-02	ci right 2.126217e-02	k: 31124	n:1480000
ZNF782   1480000 perm   1122 sec   (1319 perm/sec)   p_kst 2.102973e-02   p_cons 1.824324e-05   p_joint 6.195946e-04

Joint ci ratio: 1.291986e-01	ci left: 5.775524e-04	ci right 6.579664e-04	k: 919	n:1490000
Cons ci ratio: 7.408032e-01	ci left: 1.194176e-05	ci right 2.636471e-05	k: 27	n:1490000
KS ci ratio: 2.192283e-02	ci left: 2.077704e-02	ci right 2.123824e-02	k: 31300	n:1490000
ZNF782   1490000 perm   1136 sec   (1312 perm/sec)   p_kst 2.100671e-02   p_cons 1.812081e-05   p_joint 6.167785e-04

Joint ci ratio: 1.287794e-01	ci left: 5.775729e-04	ci right 6.577089e-04	k: 925	n:1500000
Cons ci ratio: 7.408032e-01	ci left: 1.186215e-05	ci right 2.618895e-05	k: 27	n:1500000
KS ci ratio: 2.184647e-02	ci left: 2.078373e-02	ci right 2.124345e-02	k: 31519	n:1500000
ZNF782   1500000 perm   1149 sec   (1305 perm/sec)   p_kst 2.101267e-02   p_cons 1.800000e-05   p_joint 6.166667e-04

Joint ci ratio: 1.283642e-01	ci left: 5.775937e-04	ci right 6.574545e-04	k: 931	n:1510000
Cons ci ratio: 7.408033e-01	ci left: 1.178359e-05	ci right 2.601551e-05	k: 27	n:1510000
KS ci ratio: 2.177826e-02	ci left: 2.077650e-02	ci right 2.123461e-02	k: 31717	n:1510000
ZNF782   1510000 perm   1163 sec   (1299 perm/sec)   p_kst 2.100464e-02   p_cons 1.788079e-05   p_joint 6.165563e-04

Joint ci ratio: 1.278167e-01	ci left: 5.788882e-04	ci right 6.585608e-04	k: 939	n:1520000
Cons ci ratio: 7.408033e-01	ci left: 1.170606e-05	ci right 2.584436e-05	k: 27	n:1520000
KS ci ratio: 2.170930e-02	ci left: 2.077199e-02	ci right 2.122853e-02	k: 31919	n:1520000
ZNF782   1520000 perm   1176 sec   (1292 perm/sec)   p_kst 2.099934e-02   p_cons 1.776316e-05   p_joint 6.177632e-04

Joint ci ratio: 1.254361e-01	ci left: 5.978892e-04	ci right 6.785303e-04	k: 975	n:1530000
Cons ci ratio: 7.279186e-01	ci left: 1.216068e-05	ci right 2.644943e-05	k: 28	n:1530000
KS ci ratio: 2.163755e-02	ci left: 2.077403e-02	ci right 2.122909e-02	k: 32131	n:1530000
ZNF782   1530000 perm   1189 sec   (1286 perm/sec)   p_kst 2.100065e-02   p_cons 1.830065e-05   p_joint 6.372549e-04

Joint ci ratio: 1.251799e-01	ci left: 5.965227e-04	ci right 6.768031e-04	k: 979	n:1540000
Cons ci ratio: 7.279186e-01	ci left: 1.208172e-05	ci right 2.627768e-05	k: 28	n:1540000
KS ci ratio: 2.156923e-02	ci left: 2.077089e-02	ci right 2.122442e-02	k: 32335	n:1540000
ZNF782   1540000 perm   1203 sec   (1280 perm/sec)   p_kst 2.099675e-02   p_cons 1.818182e-05   p_joint 6.357143e-04

Joint ci ratio: 1.247985e-01	ci left: 5.964241e-04	ci right 6.764285e-04	k: 985	n:1550000
Cons ci ratio: 7.279187e-01	ci left: 1.200377e-05	ci right 2.610815e-05	k: 28	n:1550000
KS ci ratio: 2.150764e-02	ci left: 2.075623e-02	ci right 2.120814e-02	k: 32521	n:1550000
ZNF782   1550000 perm   1217 sec   (1274 perm/sec)   p_kst 2.098129e-02   p_cons 1.806452e-05   p_joint 6.354839e-04

Joint ci ratio: 1.244833e-01	ci left: 5.957061e-04	ci right 6.753975e-04	k: 990	n:1560000
Cons ci ratio: 7.279187e-01	ci left: 1.192682e-05	ci right 2.594079e-05	k: 28	n:1560000
KS ci ratio: 2.143418e-02	ci left: 2.076536e-02	ci right 2.121590e-02	k: 32744	n:1560000
ZNF782   1560000 perm   1230 sec   (1268 perm/sec)   p_kst 2.098974e-02   p_cons 1.794872e-05   p_joint 6.346154e-04

Joint ci ratio: 1.242954e-01	ci left: 5.937631e-04	ci right 6.730659e-04	k: 993	n:1570000
Cons ci ratio: 7.279188e-01	ci left: 1.185086e-05	ci right 2.577556e-05	k: 28	n:1570000
KS ci ratio: 2.137340e-02	ci left: 2.075157e-02	ci right 2.120052e-02	k: 32931	n:1570000
ZNF782   1570000 perm   1244 sec   (1262 perm/sec)   p_kst 2.097516e-02   p_cons 1.783439e-05   p_joint 6.324841e-04

Joint ci ratio: 1.237364e-01	ci left: 5.955247e-04	ci right 6.746788e-04	k: 1002	n:1580000
Cons ci ratio: 7.156838e-01	ci left: 1.229228e-05	ci right 2.635992e-05	k: 29	n:1580000
KS ci ratio: 2.130361e-02	ci left: 2.075621e-02	ci right 2.120378e-02	k: 33147	n:1580000
ZNF782   1580000 perm   1258 sec   (1256 perm/sec)   p_kst 2.097911e-02   p_cons 1.835443e-05   p_joint 6.341772e-04

Joint ci ratio: 1.230026e-01	ci left: 5.990936e-04	ci right 6.782154e-04	k: 1014	n:1590000
Cons ci ratio: 7.156838e-01	ci left: 1.221497e-05	ci right 2.619413e-05	k: 29	n:1590000
KS ci ratio: 2.123189e-02	ci left: 2.076580e-02	ci right 2.121205e-02	k: 33371	n:1590000
ZNF782   1590000 perm   1272 sec   (1250 perm/sec)   p_kst 2.098805e-02   p_cons 1.823899e-05   p_joint 6.377358e-04

Joint ci ratio: 1.227008e-01	ci left: 5.983782e-04	ci right 6.771975e-04	k: 1019	n:1600000
Cons ci ratio: 7.156839e-01	ci left: 1.213863e-05	ci right 2.603042e-05	k: 29	n:1600000
KS ci ratio: 2.115993e-02	ci left: 2.077714e-02	ci right 2.122210e-02	k: 33598	n:1600000
ZNF782   1600000 perm   1286 sec   (1244 perm/sec)   p_kst 2.099875e-02   p_cons 1.812500e-05   p_joint 6.368750e-04

Joint ci ratio: 1.221629e-01	ci left: 6.000804e-04	ci right 6.787525e-04	k: 1028	n:1610000
Cons ci ratio: 7.156839e-01	ci left: 1.206323e-05	ci right 2.586874e-05	k: 29	n:1610000
KS ci ratio: 2.109730e-02	ci left: 2.077166e-02	ci right 2.121516e-02	k: 33798	n:1610000
ZNF782   1610000 perm   1300 sec   (1238 perm/sec)   p_kst 2.099255e-02   p_cons 1.801242e-05   p_joint 6.385093e-04

Joint ci ratio: 1.263483e-01	ci left: 5.563025e-04	ci right 6.319211e-04	k: 961	n:1620000
Cons ci ratio: 7.156840e-01	ci left: 1.198877e-05	ci right 2.570906e-05	k: 29	n:1620000
KS ci ratio: 2.103017e-02	ci left: 2.077607e-02	ci right 2.121824e-02	k: 34014	n:1620000
ZNF782   1620000 perm   1315 sec   (1232 perm/sec)   p_kst 2.099630e-02   p_cons 1.790123e-05   p_joint 5.932099e-04

Joint ci ratio: 1.274132e-01	ci left: 5.433850e-04	ci right 6.179172e-04	k: 945	n:1630000
Cons ci ratio: 7.156840e-01	ci left: 1.191522e-05	ci right 2.555133e-05	k: 29	n:1630000
KS ci ratio: 2.096461e-02	ci left: 2.077860e-02	ci right 2.121943e-02	k: 34227	n:1630000
ZNF782   1630000 perm   1329 sec   (1226 perm/sec)   p_kst 2.099816e-02   p_cons 1.779141e-05   p_joint 5.797546e-04

Joint ci ratio: 1.268112e-01	ci left: 5.453850e-04	ci right 6.198116e-04	k: 954	n:1640000
Cons ci ratio: 7.156840e-01	ci left: 1.184256e-05	ci right 2.539553e-05	k: 29	n:1640000
KS ci ratio: 2.089904e-02	ci left: 2.078231e-02	ci right 2.122182e-02	k: 34442	n:1640000
ZNF782   1640000 perm   1343 sec   (1221 perm/sec)   p_kst 2.100122e-02   p_cons 1.768293e-05   p_joint 5.817073e-04

Joint ci ratio: 1.317340e-01	ci left: 5.010261e-04	ci right 5.722612e-04	k: 884	n:1650000
Cons ci ratio: 7.156841e-01	ci left: 1.177079e-05	ci right 2.524162e-05	k: 29	n:1650000
KS ci ratio: 2.083194e-02	ci left: 2.079020e-02	ci right 2.122845e-02	k: 34664	n:1650000
ZNF782   1650000 perm   1358 sec   (1215 perm/sec)   p_kst 2.100848e-02   p_cons 1.757576e-05   p_joint 5.357576e-04

Joint ci ratio: 1.314373e-01	ci left: 5.003382e-04	ci right 5.713027e-04	k: 888	n:1660000
Cons ci ratio: 7.156841e-01	ci left: 1.169988e-05	ci right 2.508957e-05	k: 29	n:1660000
KS ci ratio: 2.076031e-02	ci left: 2.080819e-02	ci right 2.124529e-02	k: 34903	n:1660000
ZNF782   1660000 perm   1373 sec   (1209 perm/sec)   p_kst 2.102590e-02   p_cons 1.746988e-05   p_joint 5.349398e-04

Joint ci ratio: 1.311427e-01	ci left: 4.996587e-04	ci right 5.703556e-04	k: 892	n:1670000
Cons ci ratio: 7.156842e-01	ci left: 1.162982e-05	ci right 2.493933e-05	k: 29	n:1670000
KS ci ratio: 2.069393e-02	ci left: 2.081702e-02	ci right 2.125290e-02	k: 35127	n:1670000
ZNF782   1670000 perm   1387 sec   (1204 perm/sec)   p_kst 2.103413e-02   p_cons 1.736527e-05   p_joint 5.341317e-04

Joint ci ratio: 1.307771e-01	ci left: 4.995632e-04	ci right 5.700343e-04	k: 897	n:1680000
Cons ci ratio: 7.156842e-01	ci left: 1.156060e-05	ci right 2.479088e-05	k: 29	n:1680000
KS ci ratio: 2.063205e-02	ci left: 2.081806e-02	ci right 2.125264e-02	k: 35338	n:1680000
ZNF782   1680000 perm   1402 sec   (1198 perm/sec)   p_kst 2.103452e-02   p_cons 1.726190e-05   p_joint 5.339286e-04

Joint ci ratio: 1.241110e-01	ci left: 5.533217e-04	ci right 6.271054e-04	k: 996	n:1690000
Cons ci ratio: 7.040461e-01	ci left: 1.197688e-05	ci right 2.534124e-05	k: 30	n:1690000
KS ci ratio: 2.056895e-02	ci left: 2.082262e-02	ci right 2.125595e-02	k: 35555	n:1690000
ZNF782   1690000 perm   1417 sec   (1193 perm/sec)   p_kst 2.103846e-02   p_cons 1.775148e-05   p_joint 5.893491e-04

Joint ci ratio: 1.234931e-01	ci left: 5.557671e-04	ci right 6.294809e-04	k: 1006	n:1700000
Cons ci ratio: 7.040462e-01	ci left: 1.190643e-05	ci right 2.519218e-05	k: 30	n:1700000
KS ci ratio: 2.051024e-02	ci left: 2.081952e-02	ci right 2.125153e-02	k: 35759	n:1700000
ZNF782   1700000 perm   1432 sec   (1187 perm/sec)   p_kst 2.103471e-02   p_cons 1.764706e-05   p_joint 5.917647e-04

Joint ci ratio: 1.281626e-01	ci left: 5.117358e-04	ci right 5.823712e-04	k: 934	n:1710000
Cons ci ratio: 7.040462e-01	ci left: 1.183680e-05	ci right 2.504486e-05	k: 30	n:1710000
KS ci ratio: 2.044970e-02	ci left: 2.082111e-02	ci right 2.125186e-02	k: 35971	n:1710000
ZNF782   1710000 perm   1447 sec   (1182 perm/sec)   p_kst 2.103567e-02   p_cons 1.754386e-05   p_joint 5.461988e-04

Joint ci ratio: 1.276855e-01	ci left: 5.127002e-04	ci right 5.831852e-04	k: 941	n:1720000
Cons ci ratio: 6.929580e-01	ci left: 1.224596e-05	ci right 2.558248e-05	k: 31	n:1720000
KS ci ratio: 2.038854e-02	ci left: 2.082499e-02	ci right 2.125453e-02	k: 36187	n:1720000
ZNF782   1720000 perm   1462 sec   (1176 perm/sec)   p_kst 2.103895e-02   p_cons 1.802326e-05   p_joint 5.470930e-04

Joint ci ratio: 1.272808e-01	ci left: 5.130942e-04	ci right 5.833930e-04	k: 947	n:1730000
Cons ci ratio: 6.929580e-01	ci left: 1.217517e-05	ci right 2.543460e-05	k: 31	n:1730000
KS ci ratio: 2.032736e-02	ci left: 2.082999e-02	ci right 2.125832e-02	k: 36405	n:1730000
ZNF782   1730000 perm   1477 sec   (1171 perm/sec)   p_kst 2.104335e-02   p_cons 1.791908e-05   p_joint 5.473988e-04

Joint ci ratio: 1.358690e-01	ci left: 4.456696e-04	ci right 5.111840e-04	k: 831	n:1740000
Cons ci ratio: 6.929581e-01	ci left: 1.210520e-05	ci right 2.528843e-05	k: 31	n:1740000
KS ci ratio: 2.027154e-02	ci left: 2.082521e-02	ci right 2.125225e-02	k: 36606	n:1740000
ZNF782   1740000 perm   1492 sec   (1166 perm/sec)   p_kst 2.103793e-02   p_cons 1.781609e-05   p_joint 4.775862e-04

Joint ci ratio: 1.354626e-01	ci left: 4.458831e-04	ci right 5.112170e-04	k: 836	n:1750000
Cons ci ratio: 6.929581e-01	ci left: 1.203603e-05	ci right 2.514392e-05	k: 31	n:1750000
KS ci ratio: 2.021280e-02	ci left: 2.082730e-02	ci right 2.125314e-02	k: 36819	n:1750000
ZNF782   1750000 perm   1508 sec   (1161 perm/sec)   p_kst 2.103943e-02   p_cons 1.771429e-05   p_joint 4.777143e-04

Joint ci ratio: 1.349796e-01	ci left: 4.466435e-04	ci right 5.118367e-04	k: 842	n:1760000
Cons ci ratio: 6.929581e-01	ci left: 1.196764e-05	ci right 2.500106e-05	k: 31	n:1760000
KS ci ratio: 2.015096e-02	ci left: 2.083673e-02	ci right 2.126144e-02	k: 37045	n:1760000
ZNF782   1760000 perm   1523 sec   (1156 perm/sec)   p_kst 2.104830e-02   p_cons 1.761364e-05   p_joint 4.784091e-04

Joint ci ratio: 1.349798e-01	ci left: 4.441200e-04	ci right 5.089450e-04	k: 842	n:1770000
Cons ci ratio: 6.929582e-01	ci left: 1.190003e-05	ci right 2.485981e-05	k: 31	n:1770000
KS ci ratio: 2.009630e-02	ci left: 2.083256e-02	ci right 2.125602e-02	k: 37247	n:1770000
ZNF782   1770000 perm   1539 sec   (1150 perm/sec)   p_kst 2.104350e-02   p_cons 1.751412e-05   p_joint 4.757062e-04

Joint ci ratio: 1.344227e-01	ci left: 4.454251e-04	ci right 5.101508e-04	k: 849	n:1780000
Cons ci ratio: 6.929582e-01	ci left: 1.183317e-05	ci right 2.472015e-05	k: 31	n:1780000
KS ci ratio: 2.003115e-02	ci left: 2.085080e-02	ci right 2.127324e-02	k: 37489	n:1780000
ZNF782   1780000 perm   1554 sec   (1145 perm/sec)   p_kst 2.106124e-02   p_cons 1.741573e-05   p_joint 4.769663e-04

Joint ci ratio: 1.341076e-01	ci left: 4.450962e-04	ci right 5.096104e-04	k: 853	n:1790000
Cons ci ratio: 6.929583e-01	ci left: 1.176707e-05	ci right 2.458205e-05	k: 31	n:1790000
KS ci ratio: 1.996987e-02	ci left: 2.086216e-02	ci right 2.128353e-02	k: 37719	n:1790000
ZNF782   1790000 perm   1570 sec   (1140 perm/sec)   p_kst 2.107207e-02   p_cons 1.731844e-05   p_joint 4.765363e-04

Joint ci ratio: 1.355445e-01	ci left: 4.329606e-04	ci right 4.964424e-04	k: 835	n:1800000
Cons ci ratio: 6.823780e-01	ci left: 1.216002e-05	ci right 2.509683e-05	k: 32	n:1800000
KS ci ratio: 1.991693e-02	ci left: 2.085737e-02	ci right 2.127751e-02	k: 37920	n:1800000
ZNF782   1800000 perm   1585 sec   (1135 perm/sec)   p_kst 2.106667e-02   p_cons 1.777778e-05   p_joint 4.638889e-04

Joint ci ratio: 1.350607e-01	ci left: 4.337712e-04	ci right 4.971267e-04	k: 841	n:1810000
Cons ci ratio: 6.823780e-01	ci left: 1.209284e-05	ci right 2.495817e-05	k: 32	n:1810000
KS ci ratio: 1.985803e-02	ci left: 2.086583e-02	ci right 2.128488e-02	k: 38145	n:1810000
ZNF782   1810000 perm   1601 sec   (1130 perm/sec)   p_kst 2.107459e-02   p_cons 1.767956e-05   p_joint 4.646409e-04

Joint ci ratio: 1.348208e-01	ci left: 4.329806e-04	ci right 4.960992e-04	k: 844	n:1820000
Cons ci ratio: 6.823780e-01	ci left: 1.202639e-05	ci right 2.482104e-05	k: 32	n:1820000
KS ci ratio: 1.980703e-02	ci left: 2.085888e-02	ci right 2.127671e-02	k: 38342	n:1820000
ZNF782   1820000 perm   1617 sec   (1126 perm/sec)   p_kst 2.106703e-02   p_cons 1.758242e-05   p_joint 4.637363e-04

Joint ci ratio: 1.345821e-01	ci left: 4.321987e-04	ci right 4.950828e-04	k: 847	n:1830000
Cons ci ratio: 6.823781e-01	ci left: 1.196067e-05	ci right 2.468540e-05	k: 32	n:1830000
KS ci ratio: 1.974909e-02	ci left: 2.086724e-02	ci right 2.128400e-02	k: 38567	n:1830000
ZNF782   1830000 perm   1633 sec   (1121 perm/sec)   p_kst 2.107486e-02   p_cons 1.748634e-05   p_joint 4.628415e-04

Joint ci ratio: 1.342659e-01	ci left: 4.319506e-04	ci right 4.946391e-04	k: 851	n:1840000
Cons ci ratio: 6.823781e-01	ci left: 1.189567e-05	ci right 2.455124e-05	k: 32	n:1840000
KS ci ratio: 1.969918e-02	ci left: 2.085983e-02	ci right 2.127537e-02	k: 38763	n:1840000
ZNF782   1840000 perm   1649 sec   (1116 perm/sec)   p_kst 2.106685e-02   p_cons 1.739130e-05   p_joint 4.625000e-04

Joint ci ratio: 1.341086e-01	ci left: 4.306605e-04	ci right 4.930828e-04	k: 853	n:1850000
Cons ci ratio: 6.823781e-01	ci left: 1.183137e-05	ci right 2.441854e-05	k: 32	n:1850000
KS ci ratio: 1.964192e-02	ci left: 2.086864e-02	ci right 2.128313e-02	k: 38989	n:1850000
ZNF782   1850000 perm   1665 sec   (1111 perm/sec)   p_kst 2.107514e-02   p_cons 1.729730e-05   p_joint 4.610811e-04

Joint ci ratio: 1.333301e-01	ci left: 4.335416e-04	ci right 4.959878e-04	k: 863	n:1860000
Cons ci ratio: 6.722681e-01	ci left: 1.221276e-05	ci right 2.491618e-05	k: 33	n:1860000
KS ci ratio: 1.958873e-02	ci left: 2.086986e-02	ci right 2.128325e-02	k: 39201	n:1860000
ZNF782   1860000 perm   1680 sec   (1107 perm/sec)   p_kst 2.107581e-02   p_cons 1.774194e-05   p_joint 4.639785e-04

Joint ci ratio: 1.330226e-01	ci left: 4.332910e-04	ci right 4.955458e-04	k: 867	n:1870000
Cons ci ratio: 6.722682e-01	ci left: 1.214745e-05	ci right 2.478294e-05	k: 33	n:1870000
KS ci ratio: 1.953673e-02	ci left: 2.086947e-02	ci right 2.128174e-02	k: 39410	n:1870000
ZNF782   1870000 perm   1696 sec   (1102 perm/sec)   p_kst 2.107487e-02   p_cons 1.764706e-05   p_joint 4.636364e-04

Joint ci ratio: 1.329461e-01	ci left: 4.315004e-04	ci right 4.934595e-04	k: 868	n:1880000
Cons ci ratio: 6.625946e-01	ci left: 1.252449e-05	ci right 2.527203e-05	k: 34	n:1880000
KS ci ratio: 1.948338e-02	ci left: 2.087280e-02	ci right 2.128400e-02	k: 39626	n:1880000
ZNF782   1880000 perm   1712 sec   (1098 perm/sec)   p_kst 2.107766e-02   p_cons 1.808511e-05   p_joint 4.617021e-04

Joint ci ratio: 1.324138e-01	ci left: 4.327981e-04	ci right 4.946752e-04	k: 875	n:1890000
Cons ci ratio: 6.533269e-01	ci left: 1.289886e-05	ci right 2.575468e-05	k: 35	n:1890000
KS ci ratio: 1.942972e-02	ci left: 2.087767e-02	ci right 2.128782e-02	k: 39845	n:1890000
ZNF782   1890000 perm   1728 sec   (1094 perm/sec)   p_kst 2.108201e-02   p_cons 1.851852e-05   p_joint 4.629630e-04

Joint ci ratio: 1.322630e-01	ci left: 4.315380e-04	ci right 4.931591e-04	k: 877	n:1900000
Cons ci ratio: 6.533270e-01	ci left: 1.283097e-05	ci right 2.561913e-05	k: 35	n:1900000
KS ci ratio: 1.937255e-02	ci left: 2.089088e-02	ci right 2.130006e-02	k: 40080	n:1900000
ZNF782   1900000 perm   1744 sec   (1090 perm/sec)   p_kst 2.109474e-02   p_cons 1.842105e-05   p_joint 4.615789e-04

Joint ci ratio: 1.319628e-01	ci left: 4.313037e-04	ci right 4.927405e-04	k: 881	n:1910000
Cons ci ratio: 6.533270e-01	ci left: 1.276379e-05	ci right 2.548500e-05	k: 35	n:1910000
KS ci ratio: 1.932176e-02	ci left: 2.089144e-02	ci right 2.129955e-02	k: 40291	n:1910000
ZNF782   1910000 perm   1760 sec   (1085 perm/sec)   p_kst 2.109476e-02   p_cons 1.832461e-05   p_joint 4.612565e-04

Joint ci ratio: 1.315161e-01	ci left: 4.320793e-04	ci right 4.934021e-04	k: 887	n:1920000
Cons ci ratio: 6.533270e-01	ci left: 1.269731e-05	ci right 2.535227e-05	k: 35	n:1920000
KS ci ratio: 1.926918e-02	ci left: 2.089666e-02	ci right 2.130375e-02	k: 40511	n:1920000
ZNF782   1920000 perm   1776 sec   (1081 perm/sec)   p_kst 2.109948e-02   p_cons 1.822917e-05   p_joint 4.619792e-04

Joint ci ratio: 1.295604e-01	ci left: 4.433736e-04	ci right 5.052916e-04	k: 914	n:1930000
Cons ci ratio: 6.444377e-01	ci left: 1.306426e-05	ci right 2.582331e-05	k: 36	n:1930000
KS ci ratio: 1.921414e-02	ci left: 2.090801e-02	ci right 2.131415e-02	k: 40743	n:1930000
ZNF782   1930000 perm   1793 sec   (1077 perm/sec)   p_kst 2.111036e-02   p_cons 1.865285e-05   p_joint 4.735751e-04

Joint ci ratio: 1.292782e-01	ci left: 4.430832e-04	ci right 5.048156e-04	k: 918	n:1940000
Cons ci ratio: 6.444377e-01	ci left: 1.299692e-05	ci right 2.569020e-05	k: 36	n:1940000
KS ci ratio: 1.915837e-02	ci left: 2.092182e-02	ci right 2.132703e-02	k: 40980	n:1940000
ZNF782   1940000 perm   1810 sec   (1072 perm/sec)   p_kst 2.112371e-02   p_cons 1.855670e-05   p_joint 4.731959e-04

Joint ci ratio: 1.291379e-01	ci left: 4.418035e-04	ci right 5.032856e-04	k: 920	n:1950000
Cons ci ratio: 6.444378e-01	ci left: 1.293027e-05	ci right 2.555846e-05	k: 36	n:1950000
KS ci ratio: 1.911350e-02	ci left: 2.091303e-02	ci right 2.131711e-02	k: 41173	n:1950000
ZNF782   1950000 perm   1826 sec   (1068 perm/sec)   p_kst 2.111436e-02   p_cons 1.846154e-05   p_joint 4.717949e-04

Joint ci ratio: 1.287887e-01	ci left: 4.420181e-04	ci right 5.033511e-04	k: 925	n:1960000
Cons ci ratio: 6.444378e-01	ci left: 1.286430e-05	ci right 2.542806e-05	k: 36	n:1960000
KS ci ratio: 1.905978e-02	ci left: 2.092413e-02	ci right 2.132728e-02	k: 41405	n:1960000
ZNF782   1960000 perm   1843 sec   (1063 perm/sec)   p_kst 2.112500e-02   p_cons 1.836735e-05   p_joint 4.719388e-04

Joint ci ratio: 1.283046e-01	ci left: 4.432134e-04	ci right 5.044635e-04	k: 932	n:1970000
Cons ci ratio: 6.444378e-01	ci left: 1.279899e-05	ci right 2.529898e-05	k: 36	n:1970000
KS ci ratio: 1.901187e-02	ci left: 2.092351e-02	ci right 2.132562e-02	k: 41614	n:1970000
ZNF782   1970000 perm   1860 sec   (1059 perm/sec)   p_kst 2.112386e-02   p_cons 1.827411e-05   p_joint 4.730964e-04

Joint ci ratio: 1.280989e-01	ci left: 4.424415e-04	ci right 5.034794e-04	k: 935	n:1980000
Cons ci ratio: 6.444378e-01	ci left: 1.273435e-05	ci right 2.517121e-05	k: 36	n:1980000
KS ci ratio: 1.896270e-02	ci left: 2.092641e-02	ci right 2.132752e-02	k: 41830	n:1980000
ZNF782   1980000 perm   1877 sec   (1055 perm/sec)   p_kst 2.112626e-02   p_cons 1.818182e-05   p_joint 4.722222e-04

Joint ci ratio: 1.294906e-01	ci left: 4.304916e-04	ci right 4.905757e-04	k: 915	n:1990000
Cons ci ratio: 6.359017e-01	ci left: 1.309120e-05	ci right 2.562786e-05	k: 37	n:1990000
KS ci ratio: 1.891505e-02	ci left: 2.092678e-02	ci right 2.132688e-02	k: 42041	n:1990000
ZNF782   1990000 perm   1894 sec   (1050 perm/sec)   p_kst 2.112613e-02   p_cons 1.859296e-05   p_joint 4.597990e-04

Joint ci ratio: 1.291386e-01	ci left: 4.307582e-04	ci right 4.907036e-04	k: 920	n:2000000
Cons ci ratio: 6.359018e-01	ci left: 1.302574e-05	ci right 2.549972e-05	k: 37	n:2000000
KS ci ratio: 1.886982e-02	ci left: 2.092267e-02	ci right 2.132172e-02	k: 42243	n:2000000
ZNF782   2000000 perm   1912 sec   (1046 perm/sec)   p_kst 2.112150e-02   p_cons 1.850000e-05   p_joint 4.600000e-04

Joint ci ratio: 1.289289e-01	ci left: 4.300595e-04	ci right 4.898030e-04	k: 923	n:2010000
Cons ci ratio: 6.359018e-01	ci left: 1.296093e-05	ci right 2.537286e-05	k: 37	n:2010000
KS ci ratio: 1.882514e-02	ci left: 2.091810e-02	ci right 2.131612e-02	k: 42444	n:2010000
ZNF782   2010000 perm   1929 sec   (1042 perm/sec)   p_kst 2.111642e-02   p_cons 1.840796e-05   p_joint 4.592040e-04

Joint ci ratio: 1.285814e-01	ci left: 4.303260e-04	ci right 4.899332e-04	k: 928	n:2020000
Cons ci ratio: 6.359018e-01	ci left: 1.289677e-05	ci right 2.524725e-05	k: 37	n:2020000
KS ci ratio: 1.877110e-02	ci left: 2.093477e-02	ci right 2.133195e-02	k: 42688	n:2020000
ZNF782   2020000 perm   1946 sec   (1038 perm/sec)   p_kst 2.113267e-02   p_cons 1.831683e-05   p_joint 4.594059e-04

Joint ci ratio: 1.281681e-01	ci left: 4.310670e-04	ci right 4.905702e-04	k: 934	n:2030000
Cons ci ratio: 6.359019e-01	ci left: 1.283324e-05	ci right 2.512288e-05	k: 37	n:2030000
KS ci ratio: 1.872199e-02	ci left: 2.094147e-02	ci right 2.133773e-02	k: 42912	n:2030000
ZNF782   2030000 perm   1963 sec   (1034 perm/sec)   p_kst 2.113892e-02   p_cons 1.822660e-05   p_joint 4.600985e-04

Joint ci ratio: 1.315179e-01	ci left: 4.066626e-04	ci right 4.643789e-04	k: 887	n:2040000
Cons ci ratio: 6.359019e-01	ci left: 1.277033e-05	ci right 2.499973e-05	k: 37	n:2040000
KS ci ratio: 1.868189e-02	ci left: 2.092908e-02	ci right 2.132424e-02	k: 43097	n:2040000
ZNF782   2040000 perm   1981 sec   (1030 perm/sec)   p_kst 2.112598e-02   p_cons 1.813725e-05   p_joint 4.348039e-04

Joint ci ratio: 1.310758e-01	ci left: 4.075095e-04	ci right 4.651365e-04	k: 893	n:2050000
Cons ci ratio: 6.359019e-01	ci left: 1.270804e-05	ci right 2.487778e-05	k: 37	n:2050000
KS ci ratio: 1.863303e-02	ci left: 2.093672e-02	ci right 2.133098e-02	k: 43323	n:2050000
ZNF782   2050000 perm   1998 sec   (1026 perm/sec)   p_kst 2.113317e-02   p_cons 1.804878e-05   p_joint 4.356098e-04

Joint ci ratio: 1.310026e-01	ci left: 4.060008e-04	ci right 4.633799e-04	k: 894	n:2060000
Cons ci ratio: 6.359020e-01	ci left: 1.264635e-05	ci right 2.475702e-05	k: 37	n:2060000
KS ci ratio: 1.859022e-02	ci left: 2.093172e-02	ci right 2.132497e-02	k: 43523	n:2060000
ZNF782   2060000 perm   2016 sec   (1022 perm/sec)   p_kst 2.112767e-02   p_cons 1.796117e-05   p_joint 4.339806e-04

Joint ci ratio: 1.307837e-01	ci left: 4.054413e-04	ci right 4.626381e-04	k: 897	n:2070000
Cons ci ratio: 6.359020e-01	ci left: 1.258525e-05	ci right 2.463742e-05	k: 37	n:2070000
KS ci ratio: 1.854770e-02	ci left: 2.092677e-02	ci right 2.131902e-02	k: 43723	n:2070000
ZNF782   2070000 perm   2034 sec   (1018 perm/sec)   p_kst 2.112222e-02   p_cons 1.787440e-05   p_joint 4.333333e-04

Joint ci ratio: 1.266864e-01	ci left: 4.309446e-04	ci right 4.896916e-04	k: 956	n:2080000
Cons ci ratio: 6.276963e-01	ci left: 1.292843e-05	ci right 2.507586e-05	k: 38	n:2080000
KS ci ratio: 1.850397e-02	ci left: 2.092522e-02	ci right 2.131650e-02	k: 43930	n:2080000
ZNF782   2080000 perm   2051 sec   (1014 perm/sec)   p_kst 2.112019e-02   p_cons 1.826923e-05   p_joint 4.596154e-04

Joint ci ratio: 1.263568e-01	ci left: 4.311992e-04	ci right 4.898166e-04	k: 961	n:2090000
Cons ci ratio: 6.276964e-01	ci left: 1.286657e-05	ci right 2.495588e-05	k: 38	n:2090000
KS ci ratio: 1.845692e-02	ci left: 2.093178e-02	ci right 2.132218e-02	k: 44154	n:2090000
ZNF782   2090000 perm   2069 sec   (1010 perm/sec)   p_kst 2.112632e-02   p_cons 1.818182e-05   p_joint 4.598086e-04

Joint ci ratio: 1.257049e-01	ci left: 4.337577e-04	ci right 4.923960e-04	k: 971	n:2100000
Cons ci ratio: 6.198004e-01	ci left: 1.320613e-05	ci right 2.538767e-05	k: 39	n:2100000
KS ci ratio: 1.841150e-02	ci left: 2.093543e-02	ci right 2.132494e-02	k: 44372	n:2100000
ZNF782   2100000 perm   2087 sec   (1006 perm/sec)   p_kst 2.112952e-02   p_cons 1.857143e-05   p_joint 4.623810e-04

Joint ci ratio: 1.255759e-01	ci left: 4.326201e-04	ci right 4.910401e-04	k: 973	n:2110000
Cons ci ratio: 6.198004e-01	ci left: 1.314355e-05	ci right 2.526735e-05	k: 39	n:2110000
KS ci ratio: 1.836052e-02	ci left: 2.095227e-02	ci right 2.134099e-02	k: 44618	n:2110000
ZNF782   2110000 perm   2105 sec   (1002 perm/sec)   p_kst 2.114597e-02   p_cons 1.848341e-05   p_joint 4.611374e-04

Joint ci ratio: 1.251270e-01	ci left: 4.337778e-04	ci right 4.921292e-04	k: 980	n:2120000
Cons ci ratio: 6.198004e-01	ci left: 1.308155e-05	ci right 2.514816e-05	k: 39	n:2120000
KS ci ratio: 1.831956e-02	ci left: 2.094734e-02	ci right 2.133510e-02	k: 44818	n:2120000
ZNF782   2120000 perm   2123 sec   (999 perm/sec)   p_kst 2.114057e-02   p_cons 1.839623e-05   p_joint 4.622642e-04

Joint ci ratio: 1.249361e-01	ci left: 4.331056e-04	ci right 4.912712e-04	k: 983	n:2130000
Cons ci ratio: 6.198005e-01	ci left: 1.302013e-05	ci right 2.503010e-05	k: 39	n:2130000
KS ci ratio: 1.828053e-02	ci left: 2.093873e-02	ci right 2.132549e-02	k: 45010	n:2130000
ZNF782   2130000 perm   2140 sec   (995 perm/sec)   p_kst 2.113146e-02   p_cons 1.830986e-05   p_joint 4.615023e-04

Joint ci ratio: 1.247462e-01	ci left: 4.324399e-04	ci right 4.904212e-04	k: 986	n:2140000
Cons ci ratio: 6.198005e-01	ci left: 1.295929e-05	ci right 2.491313e-05	k: 39	n:2140000
KS ci ratio: 1.824278e-02	ci left: 2.092786e-02	ci right 2.131362e-02	k: 45197	n:2140000
ZNF782   2140000 perm   2158 sec   (992 perm/sec)   p_kst 2.112009e-02   p_cons 1.822430e-05   p_joint 4.607477e-04

Joint ci ratio: 1.244314e-01	ci left: 4.326816e-04	ci right 4.905382e-04	k: 991	n:2150000
Cons ci ratio: 6.198005e-01	ci left: 1.289901e-05	ci right 2.479726e-05	k: 39	n:2150000
KS ci ratio: 1.820383e-02	ci left: 2.092035e-02	ci right 2.130513e-02	k: 45391	n:2150000
ZNF782   2150000 perm   2175 sec   (988 perm/sec)   p_kst 2.111209e-02   p_cons 1.813953e-05   p_joint 4.609302e-04

Joint ci ratio: 1.276249e-01	ci left: 4.087080e-04	ci right 4.648677e-04	k: 942	n:2160000
Cons ci ratio: 6.198005e-01	ci left: 1.283930e-05	ci right 2.468246e-05	k: 39	n:2160000
KS ci ratio: 1.816268e-02	ci left: 2.091843e-02	ci right 2.130230e-02	k: 45597	n:2160000
ZNF782   2160000 perm   2193 sec   (985 perm/sec)   p_kst 2.110972e-02   p_cons 1.805556e-05   p_joint 4.361111e-04

Joint ci ratio: 1.274898e-01	ci left: 4.077168e-04	ci right 4.636765e-04	k: 944	n:2170000
Cons ci ratio: 6.198006e-01	ci left: 1.278013e-05	ci right 2.456871e-05	k: 39	n:2170000
KS ci ratio: 1.812343e-02	ci left: 2.091286e-02	ci right 2.129579e-02	k: 45795	n:2170000
ZNF782   2170000 perm   2211 sec   (981 perm/sec)   p_kst 2.110369e-02   p_cons 1.797235e-05   p_joint 4.350230e-04

Joint ci ratio: 1.272209e-01	ci left: 4.076230e-04	ci right 4.634428e-04	k: 948	n:2180000
Cons ci ratio: 6.198006e-01	ci left: 1.272150e-05	ci right 2.445601e-05	k: 39	n:2180000
KS ci ratio: 1.807380e-02	ci left: 2.093155e-02	ci right 2.131376e-02	k: 46046	n:2180000
ZNF782   2180000 perm   2230 sec   (978 perm/sec)   p_kst 2.112202e-02   p_cons 1.788991e-05   p_joint 4.348624e-04

Joint ci ratio: 1.271540e-01	ci left: 4.062037e-04	ci right 4.617978e-04	k: 949	n:2190000
Cons ci ratio: 6.198006e-01	ci left: 1.266341e-05	ci right 2.434434e-05	k: 39	n:2190000
KS ci ratio: 1.802915e-02	ci left: 2.093961e-02	ci right 2.132102e-02	k: 46274	n:2190000
ZNF782   2190000 perm   2248 sec   (974 perm/sec)   p_kst 2.112968e-02   p_cons 1.780822e-05   p_joint 4.333333e-04

Joint ci ratio: 1.269537e-01	ci left: 4.056776e-04	ci right 4.611057e-04	k: 952	n:2200000
Cons ci ratio: 6.198006e-01	ci left: 1.260585e-05	ci right 2.423369e-05	k: 39	n:2200000
KS ci ratio: 1.798740e-02	ci left: 2.094172e-02	ci right 2.132227e-02	k: 46489	n:2200000
ZNF782   2200000 perm   2267 sec   (970 perm/sec)   p_kst 2.113136e-02   p_cons 1.772727e-05   p_joint 4.327273e-04

Joint ci ratio: 1.267544e-01	ci left: 4.051564e-04	ci right 4.604198e-04	k: 955	n:2210000
Cons ci ratio: 6.198007e-01	ci left: 1.254881e-05	ci right 2.412403e-05	k: 39	n:2210000
KS ci ratio: 1.794888e-02	ci left: 2.093705e-02	ci right 2.131669e-02	k: 46689	n:2210000
ZNF782   2210000 perm   2286 sec   (967 perm/sec)   p_kst 2.112624e-02   p_cons 1.764706e-05   p_joint 4.321267e-04

Joint ci ratio: 1.265560e-01	ci left: 4.046399e-04	ci right 4.597400e-04	k: 958	n:2220000
Cons ci ratio: 6.198007e-01	ci left: 1.249229e-05	ci right 2.401537e-05	k: 39	n:2220000
KS ci ratio: 1.790846e-02	ci left: 2.093736e-02	ci right 2.131614e-02	k: 46900	n:2220000
ZNF782   2220000 perm   2304 sec   (963 perm/sec)   p_kst 2.112613e-02   p_cons 1.756757e-05   p_joint 4.315315e-04

Joint ci ratio: 1.262274e-01	ci left: 4.049966e-04	ci right 4.599914e-04	k: 963	n:2230000
Cons ci ratio: 6.198007e-01	ci left: 1.243627e-05	ci right 2.390767e-05	k: 39	n:2230000
KS ci ratio: 1.786773e-02	ci left: 2.093900e-02	ci right 2.131695e-02	k: 47114	n:2230000
ZNF782   2230000 perm   2323 sec   (960 perm/sec)   p_kst 2.112735e-02   p_cons 1.748879e-05   p_joint 4.318386e-04

Joint ci ratio: 1.260315e-01	ci left: 4.044856e-04	ci right 4.593194e-04	k: 966	n:2240000
Cons ci ratio: 6.198007e-01	ci left: 1.238075e-05	ci right 2.380094e-05	k: 39	n:2240000
KS ci ratio: 1.782478e-02	ci left: 2.094641e-02	ci right 2.132357e-02	k: 47341	n:2240000
ZNF782   2240000 perm   2343 sec   (956 perm/sec)   p_kst 2.113438e-02   p_cons 1.741071e-05   p_joint 4.312500e-04

Joint ci ratio: 1.257069e-01	ci left: 4.048402e-04	ci right 4.595701e-04	k: 971	n:2250000
Cons ci ratio: 6.048634e-01	ci left: 1.307661e-05	ci right 2.472042e-05	k: 41	n:2250000
KS ci ratio: 1.778137e-02	ci left: 2.095553e-02	ci right 2.133193e-02	k: 47572	n:2250000
ZNF782   2250000 perm   2362 sec   (953 perm/sec)   p_kst 2.114311e-02   p_cons 1.822222e-05   p_joint 4.315556e-04

Joint ci ratio: 1.251288e-01	ci left: 4.069062e-04	ci right 4.616437e-04	k: 980	n:2260000
Cons ci ratio: 6.048634e-01	ci left: 1.301875e-05	ci right 2.461104e-05	k: 41	n:2260000
KS ci ratio: 1.773979e-02	ci left: 2.096104e-02	ci right 2.133665e-02	k: 47795	n:2260000
ZNF782   2260000 perm   2381 sec   (949 perm/sec)   p_kst 2.114823e-02   p_cons 1.814159e-05   p_joint 4.336283e-04

Joint ci ratio: 1.250651e-01	ci left: 4.055404e-04	ci right 4.600644e-04	k: 981	n:2270000
Cons ci ratio: 6.048634e-01	ci left: 1.296140e-05	ci right 2.450262e-05	k: 41	n:2270000
KS ci ratio: 1.769625e-02	ci left: 2.097177e-02	ci right 2.134663e-02	k: 48030	n:2270000
ZNF782   2270000 perm   2400 sec   (946 perm/sec)   p_kst 2.115859e-02   p_cons 1.806167e-05   p_joint 4.321586e-04

Joint ci ratio: 1.248746e-01	ci left: 4.050364e-04	ci right 4.594035e-04	k: 984	n:2280000
Cons ci ratio: 6.048634e-01	ci left: 1.290455e-05	ci right 2.439515e-05	k: 41	n:2280000
KS ci ratio: 1.765807e-02	ci left: 2.097061e-02	ci right 2.134464e-02	k: 48238	n:2280000
ZNF782   2280000 perm   2419 sec   (942 perm/sec)   p_kst 2.115702e-02   p_cons 1.798246e-05   p_joint 4.315789e-04

Joint ci ratio: 1.246218e-01	ci left: 4.049599e-04	ci right 4.591986e-04	k: 988	n:2290000
Cons ci ratio: 6.048635e-01	ci left: 1.284820e-05	ci right 2.428863e-05	k: 41	n:2290000
KS ci ratio: 1.761512e-02	ci left: 2.098121e-02	ci right 2.135450e-02	k: 48473	n:2290000
ZNF782   2290000 perm   2439 sec   (939 perm/sec)   p_kst 2.116725e-02   p_cons 1.790393e-05   p_joint 4.314410e-04

Joint ci ratio: 1.244333e-01	ci left: 4.044629e-04	ci right 4.585470e-04	k: 991	n:2300000
Cons ci ratio: 6.048635e-01	ci left: 1.279234e-05	ci right 2.418302e-05	k: 41	n:2300000
KS ci ratio: 1.757747e-02	ci left: 2.098002e-02	ci right 2.135249e-02	k: 48681	n:2300000
ZNF782   2300000 perm   2458 sec   (936 perm/sec)   p_kst 2.116565e-02   p_cons 1.782609e-05   p_joint 4.308696e-04

Joint ci ratio: 1.187053e-01	ci left: 4.438474e-04	ci right 5.002743e-04	k: 1089	n:2310000
Cons ci ratio: 5.977887e-01	ci left: 1.310389e-05	ci right 2.457646e-05	k: 42	n:2310000
KS ci ratio: 1.753932e-02	ci left: 2.098057e-02	ci right 2.135223e-02	k: 48893	n:2310000
ZNF782   2310000 perm   2477 sec   (933 perm/sec)   p_kst 2.116580e-02   p_cons 1.818182e-05   p_joint 4.714286e-04

Joint ci ratio: 1.185424e-01	ci left: 4.431890e-04	ci right 4.994494e-04	k: 1092	n:2320000
Cons ci ratio: 5.977887e-01	ci left: 1.304740e-05	ci right 2.447053e-05	k: 42	n:2320000
KS ci ratio: 1.750597e-02	ci left: 2.097039e-02	ci right 2.134116e-02	k: 49080	n:2320000
ZNF782   2320000 perm   2496 sec   (929 perm/sec)   p_kst 2.115517e-02   p_cons 1.810345e-05   p_joint 4.706897e-04

Joint ci ratio: 1.183261e-01	ci left: 4.429527e-04	ci right 4.990735e-04	k: 1096	n:2330000
Cons ci ratio: 5.977888e-01	ci left: 1.299141e-05	ci right 2.436550e-05	k: 42	n:2330000
KS ci ratio: 1.747190e-02	ci left: 2.096243e-02	ci right 2.133233e-02	k: 49272	n:2330000
ZNF782   2330000 perm   2516 sec   (926 perm/sec)   p_kst 2.114678e-02   p_cons 1.802575e-05   p_joint 4.703863e-04

Joint ci ratio: 1.181646e-01	ci left: 4.423039e-04	ci right 4.982606e-04	k: 1099	n:2340000
Cons ci ratio: 5.909566e-01	ci left: 1.329888e-05	ci right 2.475236e-05	k: 43	n:2340000
KS ci ratio: 1.743443e-02	ci left: 2.096305e-02	ci right 2.133216e-02	k: 49484	n:2340000
ZNF782   2340000 perm   2536 sec   (923 perm/sec)   p_kst 2.114701e-02   p_cons 1.837607e-05   p_joint 4.696581e-04

Joint ci ratio: 1.180039e-01	ci left: 4.416606e-04	ci right 4.974547e-04	k: 1102	n:2350000
Cons ci ratio: 5.909566e-01	ci left: 1.324229e-05	ci right 2.464704e-05	k: 43	n:2350000
KS ci ratio: 1.740257e-02	ci left: 2.095095e-02	ci right 2.131917e-02	k: 49666	n:2350000
ZNF782   2350000 perm   2555 sec   (920 perm/sec)   p_kst 2.113447e-02   p_cons 1.829787e-05   p_joint 4.689362e-04

Joint ci ratio: 1.176842e-01	ci left: 4.422566e-04	ci right 4.979641e-04	k: 1108	n:2360000
Cons ci ratio: 5.909566e-01	ci left: 1.318618e-05	ci right 2.454260e-05	k: 43	n:2360000
KS ci ratio: 1.736324e-02	ci left: 2.095710e-02	ci right 2.132458e-02	k: 49891	n:2360000
ZNF782   2360000 perm   2575 sec   (917 perm/sec)   p_kst 2.114025e-02   p_cons 1.822034e-05   p_joint 4.694915e-04

Joint ci ratio: 1.172619e-01	ci left: 4.436669e-04	ci right 4.993376e-04	k: 1116	n:2370000
Cons ci ratio: 5.909566e-01	ci left: 1.313054e-05	ci right 2.443904e-05	k: 43	n:2370000
KS ci ratio: 1.732646e-02	ci left: 2.095774e-02	ci right 2.132445e-02	k: 50103	n:2370000
ZNF782   2370000 perm   2595 sec   (913 perm/sec)   p_kst 2.114051e-02   p_cons 1.814346e-05   p_joint 4.708861e-04

Joint ci ratio: 1.168442e-01	ci left: 4.450657e-04	ci right 5.006992e-04	k: 1124	n:2380000
Cons ci ratio: 5.909566e-01	ci left: 1.307537e-05	ci right 2.433636e-05	k: 43	n:2380000
KS ci ratio: 1.728887e-02	ci left: 2.096088e-02	ci right 2.132684e-02	k: 50321	n:2380000
ZNF782   2380000 perm   2614 sec   (910 perm/sec)   p_kst 2.114328e-02   p_cons 1.806723e-05   p_joint 4.722689e-04

Joint ci ratio: 1.165854e-01	ci left: 4.452345e-04	ci right 5.007574e-04	k: 1129	n:2390000
Cons ci ratio: 5.909567e-01	ci left: 1.302066e-05	ci right 2.423453e-05	k: 43	n:2390000
KS ci ratio: 1.725029e-02	ci left: 2.096691e-02	ci right 2.133216e-02	k: 50546	n:2390000
ZNF782   2390000 perm   2634 sec   (907 perm/sec)   p_kst 2.114895e-02   p_cons 1.799163e-05   p_joint 4.723849e-04

Joint ci ratio: 1.164824e-01	ci left: 4.441884e-04	ci right 4.995285e-04	k: 1131	n:2400000
Cons ci ratio: 5.909567e-01	ci left: 1.296641e-05	ci right 2.413356e-05	k: 43	n:2400000
KS ci ratio: 1.721371e-02	ci left: 2.096875e-02	ci right 2.133324e-02	k: 50761	n:2400000
ZNF782   2400000 perm   2654 sec   (904 perm/sec)   p_kst 2.115042e-02   p_cons 1.791667e-05   p_joint 4.712500e-04

Joint ci ratio: 1.163284e-01	ci left: 4.435539e-04	ci right 4.987368e-04	k: 1134	n:2410000
Cons ci ratio: 5.909567e-01	ci left: 1.291261e-05	ci right 2.403342e-05	k: 43	n:2410000
KS ci ratio: 1.717392e-02	ci left: 2.097883e-02	ci right 2.134265e-02	k: 50996	n:2410000
ZNF782   2410000 perm   2675 sec   (901 perm/sec)   p_kst 2.116017e-02   p_cons 1.784232e-05   p_joint 4.705394e-04

Joint ci ratio: 1.162261e-01	ci left: 4.425234e-04	ci right 4.975264e-04	k: 1136	n:2420000
Cons ci ratio: 5.909567e-01	ci left: 1.285925e-05	ci right 2.393411e-05	k: 43	n:2420000
KS ci ratio: 1.713491e-02	ci left: 2.098760e-02	ci right 2.135074e-02	k: 51228	n:2420000
ZNF782   2420000 perm   2695 sec   (898 perm/sec)   p_kst 2.116860e-02   p_cons 1.776860e-05   p_joint 4.694215e-04

Joint ci ratio: 1.212949e-01	ci left: 4.035666e-04	ci right 4.560721e-04	k: 1043	n:2430000
Cons ci ratio: 5.909568e-01	ci left: 1.280633e-05	ci right 2.383561e-05	k: 43	n:2430000
KS ci ratio: 1.710330e-02	ci left: 2.097909e-02	ci right 2.134140e-02	k: 51418	n:2430000
ZNF782   2430000 perm   2715 sec   (895 perm/sec)   p_kst 2.115967e-02   p_cons 1.769547e-05   p_joint 4.292181e-04

Joint ci ratio: 1.210632e-01	ci left: 4.035023e-04	ci right 4.558920e-04	k: 1047	n:2440000
Cons ci ratio: 5.909568e-01	ci left: 1.275385e-05	ci right 2.373793e-05	k: 43	n:2440000
KS ci ratio: 1.706545e-02	ci left: 2.098615e-02	ci right 2.134777e-02	k: 51646	n:2440000
ZNF782   2440000 perm   2736 sec   (892 perm/sec)   p_kst 2.116639e-02   p_cons 1.762295e-05   p_joint 4.290984e-04

Joint ci ratio: 1.206608e-01	ci left: 4.046261e-04	ci right 4.569747e-04	k: 1054	n:2450000
Cons ci ratio: 5.909568e-01	ci left: 1.270179e-05	ci right 2.364104e-05	k: 43	n:2450000
KS ci ratio: 1.702936e-02	ci left: 2.098950e-02	ci right 2.135041e-02	k: 51865	n:2450000
ZNF782   2450000 perm   2756 sec   (889 perm/sec)   p_kst 2.116939e-02   p_cons 1.755102e-05   p_joint 4.302041e-04

Joint ci ratio: 1.203191e-01	ci left: 4.053468e-04	ci right 4.576295e-04	k: 1060	n:2460000
Cons ci ratio: 5.909568e-01	ci left: 1.265016e-05	ci right 2.354494e-05	k: 43	n:2460000
KS ci ratio: 1.699800e-02	ci left: 2.098189e-02	ci right 2.134200e-02	k: 52057	n:2460000
ZNF782   2460000 perm   2777 sec   (886 perm/sec)   p_kst 2.116138e-02   p_cons 1.747967e-05   p_joint 4.308943e-04

Joint ci ratio: 1.201494e-01	ci left: 4.048838e-04	ci right 4.570279e-04	k: 1063	n:2470000
Cons ci ratio: 5.909569e-01	ci left: 1.259894e-05	ci right 2.344961e-05	k: 43	n:2470000
KS ci ratio: 1.696515e-02	ci left: 2.097838e-02	ci right 2.133772e-02	k: 52259	n:2470000
ZNF782   2470000 perm   2798 sec   (883 perm/sec)   p_kst 2.115749e-02   p_cons 1.740891e-05   p_joint 4.303644e-04

Joint ci ratio: 1.197002e-01	ci left: 4.063802e-04	ci right 4.585075e-04	k: 1071	n:2480000
Cons ci ratio: 5.909569e-01	ci left: 1.254814e-05	ci right 2.335506e-05	k: 43	n:2480000
KS ci ratio: 1.693216e-02	ci left: 2.097570e-02	ci right 2.133429e-02	k: 52463	n:2480000
ZNF782   2480000 perm   2819 sec   (880 perm/sec)   p_kst 2.115444e-02   p_cons 1.733871e-05   p_joint 4.318548e-04

Joint ci ratio: 1.194775e-01	ci left: 4.063065e-04	ci right 4.583206e-04	k: 1075	n:2490000
Cons ci ratio: 5.909569e-01	ci left: 1.249774e-05	ci right 2.326126e-05	k: 43	n:2490000
KS ci ratio: 1.690067e-02	ci left: 2.096984e-02	ci right 2.132766e-02	k: 52659	n:2490000
ZNF782   2490000 perm   2839 sec   (877 perm/sec)   p_kst 2.114819e-02   p_cons 1.726908e-05   p_joint 4.317269e-04

Joint ci ratio: 1.192008e-01	ci left: 4.066216e-04	ci right 4.585470e-04	k: 1080	n:2500000
Cons ci ratio: 5.909569e-01	ci left: 1.244775e-05	ci right 2.316822e-05	k: 43	n:2500000
KS ci ratio: 1.686252e-02	ci left: 2.098076e-02	ci right 2.133795e-02	k: 52897	n:2500000
ZNF782   2500000 perm   2860 sec   (874 perm/sec)   p_kst 2.115880e-02   p_cons 1.720000e-05   p_joint 4.320000e-04

Joint ci ratio: 1.190358e-01	ci left: 4.061612e-04	ci right 4.579509e-04	k: 1083	n:2510000
Cons ci ratio: 5.909569e-01	ci left: 1.239816e-05	ci right 2.307591e-05	k: 43	n:2510000
KS ci ratio: 1.683417e-02	ci left: 2.096819e-02	ci right 2.132455e-02	k: 53076	n:2510000
ZNF782   2510000 perm   2881 sec   (871 perm/sec)   p_kst 2.114582e-02   p_cons 1.713147e-05   p_joint 4.314741e-04

Joint ci ratio: 1.187077e-01	ci left: 4.068596e-04	ci right 4.585854e-04	k: 1089	n:2520000
Cons ci ratio: 5.909570e-01	ci left: 1.234896e-05	ci right 2.298434e-05	k: 43	n:2520000
KS ci ratio: 1.679807e-02	ci left: 2.097507e-02	ci right 2.133079e-02	k: 53304	n:2520000
ZNF782   2520000 perm   2901 sec   (869 perm/sec)   p_kst 2.115238e-02   p_cons 1.706349e-05   p_joint 4.321429e-04

Joint ci ratio: 1.184905e-01	ci left: 4.067856e-04	ci right 4.584007e-04	k: 1093	n:2530000
Cons ci ratio: 5.909570e-01	ci left: 1.230015e-05	ci right 2.289350e-05	k: 43	n:2530000
KS ci ratio: 1.676205e-02	ci left: 2.098230e-02	ci right 2.133737e-02	k: 53533	n:2530000
ZNF782   2530000 perm   2923 sec   (866 perm/sec)   p_kst 2.115929e-02   p_cons 1.699605e-05   p_joint 4.320158e-04

Joint ci ratio: 1.182744e-01	ci left: 4.067123e-04	ci right 4.582174e-04	k: 1097	n:2540000
Cons ci ratio: 5.909570e-01	ci left: 1.225172e-05	ci right 2.280337e-05	k: 43	n:2540000
KS ci ratio: 1.672816e-02	ci left: 2.098477e-02	ci right 2.133916e-02	k: 53750	n:2540000
ZNF782   2540000 perm   2943 sec   (863 perm/sec)   p_kst 2.116142e-02   p_cons 1.692913e-05   p_joint 4.318898e-04

Joint ci ratio: 1.181132e-01	ci left: 4.062590e-04	ci right 4.576317e-04	k: 1100	n:2550000
Cons ci ratio: 5.909570e-01	ci left: 1.220368e-05	ci right 2.271394e-05	k: 43	n:2550000
KS ci ratio: 1.669321e-02	ci left: 2.099035e-02	ci right 2.134408e-02	k: 53975	n:2550000
ZNF782   2550000 perm   2965 sec   (860 perm/sec)   p_kst 2.116667e-02   p_cons 1.686275e-05   p_joint 4.313725e-04

Joint ci ratio: 1.179527e-01	ci left: 4.058093e-04	ci right 4.570505e-04	k: 1103	n:2560000
Cons ci ratio: 5.909570e-01	ci left: 1.215601e-05	ci right 2.262521e-05	k: 43	n:2560000
KS ci ratio: 1.666304e-02	ci left: 2.098460e-02	ci right 2.133758e-02	k: 54171	n:2560000
ZNF782   2560000 perm   2986 sec   (857 perm/sec)   p_kst 2.116055e-02   p_cons 1.679688e-05   p_joint 4.308594e-04

Joint ci ratio: 1.177396e-01	ci left: 4.057408e-04	ci right 4.568744e-04	k: 1107	n:2570000
Cons ci ratio: 5.909571e-01	ci left: 1.210871e-05	ci right 2.253718e-05	k: 43	n:2570000
KS ci ratio: 1.662834e-02	ci left: 2.099052e-02	ci right 2.134286e-02	k: 54397	n:2570000
ZNF782   2570000 perm   3007 sec   (855 perm/sec)   p_kst 2.116615e-02   p_cons 1.673152e-05   p_joint 4.307393e-04

Joint ci ratio: 1.176335e-01	ci left: 4.049206e-04	ci right 4.559016e-04	k: 1109	n:2580000
Cons ci ratio: 5.843539e-01	ci left: 1.239168e-05	ci right 2.289449e-05	k: 44	n:2580000
KS ci ratio: 1.659727e-02	ci left: 2.098790e-02	ci right 2.133953e-02	k: 54601	n:2580000
ZNF782   2580000 perm   3028 sec   (852 perm/sec)   p_kst 2.116318e-02   p_cons 1.705426e-05   p_joint 4.298450e-04

Joint ci ratio: 1.173694e-01	ci left: 4.052309e-04	ci right 4.561285e-04	k: 1114	n:2590000
Cons ci ratio: 5.843539e-01	ci left: 1.234384e-05	ci right 2.280609e-05	k: 44	n:2590000
KS ci ratio: 1.655975e-02	ci left: 2.100184e-02	ci right 2.135290e-02	k: 54848	n:2590000
ZNF782   2590000 perm   3050 sec   (849 perm/sec)   p_kst 2.117683e-02   p_cons 1.698842e-05   p_joint 4.301158e-04

Joint ci ratio: 1.171071e-01	ci left: 4.055390e-04	ci right 4.563536e-04	k: 1119	n:2600000
Cons ci ratio: 5.843539e-01	ci left: 1.229636e-05	ci right 2.271838e-05	k: 44	n:2600000
KS ci ratio: 1.652630e-02	ci left: 2.100609e-02	ci right 2.135651e-02	k: 55070	n:2600000
ZNF782   2600000 perm   3071 sec   (847 perm/sec)   p_kst 2.118077e-02   p_cons 1.692308e-05   p_joint 4.303846e-04

Joint ci ratio: 1.169507e-01	ci left: 4.051010e-04	ci right 4.557882e-04	k: 1122	n:2610000
Cons ci ratio: 5.843539e-01	ci left: 1.224925e-05	ci right 2.263133e-05	k: 44	n:2610000
KS ci ratio: 1.649321e-02	ci left: 2.100993e-02	ci right 2.135971e-02	k: 55291	n:2610000
ZNF782   2610000 perm   3092 sec   (844 perm/sec)   p_kst 2.118429e-02   p_cons 1.685824e-05   p_joint 4.298851e-04

Joint ci ratio: 1.168467e-01	ci left: 4.042959e-04	ci right 4.548343e-04	k: 1124	n:2620000
Cons ci ratio: 5.843540e-01	ci left: 1.220249e-05	ci right 2.254495e-05	k: 44	n:2620000
KS ci ratio: 1.646396e-02	ci left: 2.100462e-02	ci right 2.135369e-02	k: 55488	n:2620000
ZNF782   2620000 perm   3114 sec   (841 perm/sec)   p_kst 2.117863e-02   p_cons 1.679389e-05   p_joint 4.290076e-04

Joint ci ratio: 1.166395e-01	ci left: 4.042351e-04	ci right 4.546702e-04	k: 1128	n:2630000
Cons ci ratio: 5.843540e-01	ci left: 1.215610e-05	ci right 2.245923e-05	k: 44	n:2630000
KS ci ratio: 1.643154e-02	ci left: 2.100769e-02	ci right 2.135611e-02	k: 55707	n:2630000
ZNF782   2630000 perm   3136 sec   (839 perm/sec)   p_kst 2.118137e-02   p_cons 1.673004e-05   p_joint 4.288973e-04

Joint ci ratio: 1.162796e-01	ci left: 4.052782e-04	ci right 4.556766e-04	k: 1135	n:2640000
Cons ci ratio: 5.779673e-01	ci left: 1.243310e-05	ci right 2.280809e-05	k: 45	n:2640000
KS ci ratio: 1.639737e-02	ci left: 2.101563e-02	ci right 2.136345e-02	k: 55939	n:2640000
ZNF782   2640000 perm   3157 sec   (836 perm/sec)   p_kst 2.118902e-02   p_cons 1.704545e-05   p_joint 4.299242e-04

Joint ci ratio: 1.160245e-01	ci left: 4.055808e-04	ci right 4.558987e-04	k: 1140	n:2650000
Cons ci ratio: 5.779673e-01	ci left: 1.238618e-05	ci right 2.272203e-05	k: 45	n:2650000
KS ci ratio: 1.636817e-02	ci left: 2.101149e-02	ci right 2.135862e-02	k: 56139	n:2650000
ZNF782   2650000 perm   3179 sec   (834 perm/sec)   p_kst 2.118453e-02   p_cons 1.698113e-05   p_joint 4.301887e-04

Joint ci ratio: 1.158217e-01	ci left: 4.055163e-04	ci right 4.557321e-04	k: 1144	n:2660000
Cons ci ratio: 5.779674e-01	ci left: 1.233962e-05	ci right 2.263660e-05	k: 45	n:2660000
KS ci ratio: 1.634298e-02	ci left: 2.099764e-02	ci right 2.134400e-02	k: 56313	n:2660000
ZNF782   2660000 perm   3202 sec   (831 perm/sec)   p_kst 2.117030e-02   p_cons 1.691729e-05   p_joint 4.300752e-04

Joint ci ratio: 1.153190e-01	ci left: 4.076345e-04	ci right 4.578788e-04	k: 1154	n:2670000
Cons ci ratio: 5.779674e-01	ci left: 1.229340e-05	ci right 2.255182e-05	k: 45	n:2670000
KS ci ratio: 1.631054e-02	ci left: 2.100255e-02	ci right 2.134830e-02	k: 56537	n:2670000
ZNF782   2670000 perm   3224 sec   (828 perm/sec)   p_kst 2.117491e-02   p_cons 1.685393e-05   p_joint 4.322097e-04

Joint ci ratio: 1.149711e-01	ci left: 4.086502e-04	ci right 4.588574e-04	k: 1161	n:2680000
Cons ci ratio: 5.779674e-01	ci left: 1.224753e-05	ci right 2.246768e-05	k: 45	n:2680000
KS ci ratio: 1.628004e-02	ci left: 2.100297e-02	ci right 2.134807e-02	k: 56749	n:2680000
ZNF782   2680000 perm   3246 sec   (826 perm/sec)   p_kst 2.117500e-02   p_cons 1.679104e-05   p_joint 4.332090e-04

Joint ci ratio: 1.146754e-01	ci left: 4.092975e-04	ci right 4.594461e-04	k: 1167	n:2690000
Cons ci ratio: 5.779674e-01	ci left: 1.220200e-05	ci right 2.238415e-05	k: 45	n:2690000
KS ci ratio: 1.624753e-02	ci left: 2.100893e-02	ci right 2.135344e-02	k: 56976	n:2690000
ZNF782   2690000 perm   3268 sec   (823 perm/sec)   p_kst 2.118067e-02   p_cons 1.672862e-05   p_joint 4.338290e-04

Joint ci ratio: 1.144795e-01	ci left: 4.092206e-04	ci right 4.592684e-04	k: 1171	n:2700000
Cons ci ratio: 5.779674e-01	ci left: 1.215681e-05	ci right 2.230125e-05	k: 45	n:2700000
KS ci ratio: 1.621464e-02	ci left: 2.101633e-02	ci right 2.136025e-02	k: 57207	n:2700000
ZNF782   2700000 perm   3290 sec   (821 perm/sec)   p_kst 2.118778e-02   p_cons 1.666667e-05   p_joint 4.337037e-04

Joint ci ratio: 1.141876e-01	ci left: 4.098613e-04	ci right 4.598509e-04	k: 1177	n:2710000
Cons ci ratio: 5.779675e-01	ci left: 1.211195e-05	ci right 2.221896e-05	k: 45	n:2710000
KS ci ratio: 1.618511e-02	ci left: 2.101559e-02	ci right 2.135887e-02	k: 57416	n:2710000
ZNF782   2710000 perm   3313 sec   (818 perm/sec)   p_kst 2.118672e-02   p_cons 1.660517e-05   p_joint 4.343173e-04

Joint ci ratio: 1.140908e-01	ci left: 4.090688e-04	ci right 4.589166e-04	k: 1179	n:2720000
Cons ci ratio: 5.779675e-01	ci left: 1.206742e-05	ci right 2.213727e-05	k: 45	n:2720000
KS ci ratio: 1.615688e-02	ci left: 2.101192e-02	ci right 2.135454e-02	k: 57617	n:2720000
ZNF782   2720000 perm   3335 sec   (815 perm/sec)   p_kst 2.118272e-02   p_cons 1.654412e-05   p_joint 4.334559e-04

Joint ci ratio: 1.137060e-01	ci left: 4.104173e-04	ci right 4.602494e-04	k: 1187	n:2730000
Cons ci ratio: 5.717857e-01	ci left: 1.233621e-05	ci right 2.247523e-05	k: 46	n:2730000
KS ci ratio: 1.612838e-02	ci left: 2.100938e-02	ci right 2.135134e-02	k: 57821	n:2730000
ZNF782   2730000 perm   3358 sec   (813 perm/sec)   p_kst 2.117985e-02   p_cons 1.684982e-05   p_joint 4.347985e-04

Joint ci ratio: 1.136582e-01	ci left: 4.092740e-04	ci right 4.589450e-04	k: 1188	n:2740000
Cons ci ratio: 5.717858e-01	ci left: 1.229119e-05	ci right 2.239321e-05	k: 46	n:2740000
KS ci ratio: 1.609748e-02	ci left: 2.101340e-02	ci right 2.135477e-02	k: 58043	n:2740000
ZNF782   2740000 perm   3380 sec   (811 perm/sec)   p_kst 2.118358e-02   p_cons 1.678832e-05   p_joint 4.335766e-04

Joint ci ratio: 1.135628e-01	ci left: 4.084923e-04	ci right 4.580241e-04	k: 1190	n:2750000
Cons ci ratio: 5.657982e-01	ci left: 1.255778e-05	ci right 2.272722e-05	k: 47	n:2750000
KS ci ratio: 1.606718e-02	ci left: 2.101630e-02	ci right 2.135707e-02	k: 58262	n:2750000
ZNF782   2750000 perm   3403 sec   (808 perm/sec)   p_kst 2.118618e-02   p_cons 1.709091e-05   p_joint 4.327273e-04

Joint ci ratio: 1.131832e-01	ci left: 4.098286e-04	ci right 4.593453e-04	k: 1198	n:2760000
Cons ci ratio: 5.657982e-01	ci left: 1.251228e-05	ci right 2.264488e-05	k: 47	n:2760000
KS ci ratio: 1.604167e-02	ci left: 2.100728e-02	ci right 2.134735e-02	k: 58448	n:2760000
ZNF782   2760000 perm   3426 sec   (806 perm/sec)   p_kst 2.117681e-02   p_cons 1.702899e-05   p_joint 4.340580e-04

Joint ci ratio: 1.130419e-01	ci left: 4.094015e-04	ci right 4.588007e-04	k: 1201	n:2770000
Cons ci ratio: 5.657983e-01	ci left: 1.246711e-05	ci right 2.256313e-05	k: 47	n:2770000
KS ci ratio: 1.601223e-02	ci left: 2.100875e-02	ci right 2.134821e-02	k: 58663	n:2770000
ZNF782   2770000 perm   3448 sec   (803 perm/sec)   p_kst 2.117798e-02   p_cons 1.696751e-05   p_joint 4.335740e-04

Joint ci ratio: 1.128075e-01	ci left: 4.096766e-04	ci right 4.589996e-04	k: 1206	n:2780000
Cons ci ratio: 5.657983e-01	ci left: 1.242227e-05	ci right 2.248196e-05	k: 47	n:2780000
KS ci ratio: 1.598227e-02	ci left: 2.101200e-02	ci right 2.135087e-02	k: 58883	n:2780000
ZNF782   2780000 perm   3472 sec   (801 perm/sec)   p_kst 2.118094e-02   p_cons 1.690647e-05   p_joint 4.338129e-04

Joint ci ratio: 1.126211e-01	ci left: 4.096015e-04	ci right 4.588286e-04	k: 1210	n:2790000
Cons ci ratio: 5.657983e-01	ci left: 1.237774e-05	ci right 2.240138e-05	k: 47	n:2790000
KS ci ratio: 1.595440e-02	ci left: 2.101022e-02	ci right 2.134848e-02	k: 59089	n:2790000
ZNF782   2790000 perm   3495 sec   (798 perm/sec)   p_kst 2.117885e-02   p_cons 1.684588e-05   p_joint 4.336918e-04

Joint ci ratio: 1.123893e-01	ci left: 4.098741e-04	ci right 4.590258e-04	k: 1215	n:2800000
Cons ci ratio: 5.599950e-01	ci left: 1.263982e-05	ci right 2.272888e-05	k: 48	n:2800000
KS ci ratio: 1.592517e-02	ci left: 2.101238e-02	ci right 2.135004e-02	k: 59306	n:2800000
ZNF782   2800000 perm   3518 sec   (796 perm/sec)   p_kst 2.118071e-02   p_cons 1.714286e-05   p_joint 4.339286e-04

Joint ci ratio: 1.122049e-01	ci left: 4.097990e-04	ci right 4.588557e-04	k: 1219	n:2810000
Cons ci ratio: 5.599950e-01	ci left: 1.259483e-05	ci right 2.264799e-05	k: 48	n:2810000
KS ci ratio: 1.589842e-02	ci left: 2.100849e-02	ci right 2.134552e-02	k: 59506	n:2810000
ZNF782   2810000 perm   3542 sec   (793 perm/sec)   p_kst 2.117651e-02   p_cons 1.708185e-05   p_joint 4.338078e-04

Joint ci ratio: 1.119757e-01	ci left: 4.100691e-04	ci right 4.590513e-04	k: 1224	n:2820000
Cons ci ratio: 5.599950e-01	ci left: 1.255017e-05	ci right 2.256768e-05	k: 48	n:2820000
KS ci ratio: 1.587004e-02	ci left: 2.100923e-02	ci right 2.134566e-02	k: 59719	n:2820000
ZNF782   2820000 perm   3565 sec   (791 perm/sec)   p_kst 2.117695e-02   p_cons 1.702128e-05   p_joint 4.340426e-04

Joint ci ratio: 1.118388e-01	ci left: 4.096505e-04	ci right 4.585190e-04	k: 1227	n:2830000
Cons ci ratio: 5.543667e-01	ci left: 1.280938e-05	ci right 2.289061e-05	k: 49	n:2830000
KS ci ratio: 1.584438e-02	ci left: 2.100327e-02	ci right 2.133906e-02	k: 59913	n:2830000
ZNF782   2830000 perm   3589 sec   (789 perm/sec)   p_kst 2.117067e-02   p_cons 1.731449e-05   p_joint 4.335689e-04

Joint ci ratio: 1.116118e-01	ci left: 4.099195e-04	ci right 4.587142e-04	k: 1232	n:2840000
Cons ci ratio: 5.543667e-01	ci left: 1.276428e-05	ci right 2.281001e-05	k: 49	n:2840000
KS ci ratio: 1.581373e-02	ci left: 2.101068e-02	ci right 2.134593e-02	k: 60145	n:2840000
ZNF782   2840000 perm   3612 sec   (786 perm/sec)   p_kst 2.117782e-02   p_cons 1.725352e-05   p_joint 4.338028e-04

Joint ci ratio: 1.113412e-01	ci left: 4.105277e-04	ci right 4.592686e-04	k: 1238	n:2850000
Cons ci ratio: 5.543668e-01	ci left: 1.271949e-05	ci right 2.272997e-05	k: 49	n:2850000
KS ci ratio: 1.578580e-02	ci left: 2.101140e-02	ci right 2.134606e-02	k: 60358	n:2850000
ZNF782   2850000 perm   3636 sec   (784 perm/sec)   p_kst 2.117825e-02   p_cons 1.719298e-05   p_joint 4.343860e-04

Joint ci ratio: 1.113413e-01	ci left: 4.090923e-04	ci right 4.576628e-04	k: 1238	n:2860000
Cons ci ratio: 5.543668e-01	ci left: 1.267502e-05	ci right 2.265050e-05	k: 49	n:2860000
KS ci ratio: 1.575855e-02	ci left: 2.101072e-02	ci right 2.134479e-02	k: 60567	n:2860000
ZNF782   2860000 perm   3660 sec   (781 perm/sec)   p_kst 2.117727e-02   p_cons 1.713287e-05   p_joint 4.328671e-04

Joint ci ratio: 1.109390e-01	ci left: 4.107156e-04	ci right 4.592912e-04	k: 1247	n:2870000
Cons ci ratio: 5.489048e-01	ci left: 1.293068e-05	ci right 2.296815e-05	k: 50	n:2870000
KS ci ratio: 1.573184e-02	ci left: 2.100901e-02	ci right 2.134248e-02	k: 60773	n:2870000
ZNF782   2870000 perm   3684 sec   (779 perm/sec)   p_kst 2.117526e-02   p_cons 1.742160e-05   p_joint 4.344948e-04

Joint ci ratio: 1.107616e-01	ci left: 4.106399e-04	ci right 4.591238e-04	k: 1251	n:2880000
Cons ci ratio: 5.489048e-01	ci left: 1.288578e-05	ci right 2.288840e-05	k: 50	n:2880000
KS ci ratio: 1.570184e-02	ci left: 2.101630e-02	ci right 2.134925e-02	k: 61005	n:2880000
ZNF782   2880000 perm   3708 sec   (777 perm/sec)   p_kst 2.118229e-02   p_cons 1.736111e-05   p_joint 4.343750e-04

Joint ci ratio: 1.105411e-01	ci left: 4.109012e-04	ci right 4.593131e-04	k: 1256	n:2890000
Cons ci ratio: 5.489049e-01	ci left: 1.284119e-05	ci right 2.280920e-05	k: 50	n:2890000
KS ci ratio: 1.567280e-02	ci left: 2.102147e-02	ci right 2.135388e-02	k: 61231	n:2890000
ZNF782   2890000 perm   3731 sec   (774 perm/sec)   p_kst 2.118720e-02   p_cons 1.730104e-05   p_joint 4.346021e-04

Joint ci ratio: 1.102782e-01	ci left: 4.114962e-04	ci right 4.598553e-04	k: 1262	n:2900000
Cons ci ratio: 5.489049e-01	ci left: 1.279691e-05	ci right 2.273055e-05	k: 50	n:2900000
KS ci ratio: 1.564274e-02	ci left: 2.102970e-02	ci right 2.136160e-02	k: 61466	n:2900000
ZNF782   2900000 perm   3755 sec   (772 perm/sec)   p_kst 2.119517e-02   p_cons 1.724138e-05   p_joint 4.351724e-04

Joint ci ratio: 1.100172e-01	ci left: 4.120871e-04	ci right 4.603937e-04	k: 1268	n:2910000
Cons ci ratio: 5.489049e-01	ci left: 1.275293e-05	ci right 2.265244e-05	k: 50	n:2910000
KS ci ratio: 1.561584e-02	ci left: 2.103001e-02	ci right 2.136133e-02	k: 61678	n:2910000
ZNF782   2910000 perm   3779 sec   (770 perm/sec)   p_kst 2.119519e-02   p_cons 1.718213e-05   p_joint 4.357388e-04

Joint ci ratio: 1.098442e-01	ci left: 4.120081e-04	ci right 4.602245e-04	k: 1272	n:2920000
Cons ci ratio: 5.436013e-01	ci left: 1.300443e-05	ci right 2.296418e-05	k: 51	n:2920000
KS ci ratio: 1.559190e-02	ci left: 2.102280e-02	ci right 2.135349e-02	k: 61868	n:2920000
ZNF782   2920000 perm   3804 sec   (768 perm/sec)   p_kst 2.118767e-02   p_cons 1.746575e-05   p_joint 4.356164e-04

Joint ci ratio: 1.096291e-01	ci left: 4.122616e-04	ci right 4.604071e-04	k: 1277	n:2930000
Cons ci ratio: 5.384484e-01	ci left: 1.325466e-05	ci right 2.327334e-05	k: 52	n:2930000
KS ci ratio: 1.556731e-02	ci left: 2.101768e-02	ci right 2.134777e-02	k: 62064	n:2930000
ZNF782   2930000 perm   3828 sec   (765 perm/sec)   p_kst 2.118225e-02   p_cons 1.774744e-05   p_joint 4.358362e-04

Joint ci ratio: 1.094579e-01	ci left: 4.121826e-04	ci right 4.602389e-04	k: 1281	n:2940000
Cons ci ratio: 5.384485e-01	ci left: 1.320958e-05	ci right 2.319418e-05	k: 52	n:2940000
KS ci ratio: 1.554295e-02	ci left: 2.101226e-02	ci right 2.134174e-02	k: 62259	n:2940000
ZNF782   2940000 perm   3853 sec   (763 perm/sec)   p_kst 2.117653e-02   p_cons 1.768707e-05   p_joint 4.357143e-04

Joint ci ratio: 1.090757e-01	ci left: 4.137528e-04	ci right 4.618129e-04	k: 1290	n:2950000
Cons ci ratio: 5.384485e-01	ci left: 1.316480e-05	ci right 2.311556e-05	k: 52	n:2950000
KS ci ratio: 1.551478e-02	ci left: 2.101735e-02	ci right 2.134631e-02	k: 62485	n:2950000
ZNF782   2950000 perm   3877 sec   (761 perm/sec)   p_kst 2.118136e-02   p_cons 1.762712e-05   p_joint 4.372881e-04

Joint ci ratio: 1.087811e-01	ci left: 4.146555e-04	ci right 4.626820e-04	k: 1297	n:2960000
Cons ci ratio: 5.384485e-01	ci left: 1.312033e-05	ci right 2.303746e-05	k: 52	n:2960000
KS ci ratio: 1.548512e-02	ci left: 2.102677e-02	ci right 2.135525e-02	k: 62724	n:2960000
ZNF782   2960000 perm   3902 sec   (759 perm/sec)   p_kst 2.119054e-02   p_cons 1.756757e-05   p_joint 4.381757e-04

Joint ci ratio: 1.086139e-01	ci left: 4.145695e-04	ci right 4.625075e-04	k: 1301	n:2970000
Cons ci ratio: 5.384485e-01	ci left: 1.307615e-05	ci right 2.295990e-05	k: 52	n:2970000
KS ci ratio: 1.545802e-02	ci left: 2.102976e-02	ci right 2.135770e-02	k: 62944	n:2970000
ZNF782   2970000 perm   3926 sec   (756 perm/sec)   p_kst 2.119327e-02   p_cons 1.750842e-05   p_joint 4.380471e-04

Joint ci ratio: 1.083230e-01	ci left: 4.154636e-04	ci right 4.633682e-04	k: 1308	n:2980000
Cons ci ratio: 5.384485e-01	ci left: 1.303227e-05	ci right 2.288285e-05	k: 52	n:2980000
KS ci ratio: 1.543043e-02	ci left: 2.103441e-02	ci right 2.136183e-02	k: 63169	n:2980000
ZNF782   2980000 perm   3951 sec   (754 perm/sec)   p_kst 2.119765e-02   p_cons 1.744966e-05   p_joint 4.389262e-04

Joint ci ratio: 1.034560e-01	ci left: 4.550996e-04	ci right 5.050734e-04	k: 1434	n:2990000
Cons ci ratio: 5.334395e-01	ci left: 1.327783e-05	ci right 2.318566e-05	k: 53	n:2990000
KS ci ratio: 1.540473e-02	ci left: 2.103435e-02	ci right 2.136122e-02	k: 63380	n:2990000
ZNF782   2990000 perm   3976 sec   (752 perm/sec)   p_kst 2.119732e-02   p_cons 1.772575e-05   p_joint 4.795987e-04

Joint ci ratio: 1.032763e-01	ci left: 4.552062e-04	ci right 5.050996e-04	k: 1439	n:3000000
Cons ci ratio: 5.334395e-01	ci left: 1.323357e-05	ci right 2.310837e-05	k: 53	n:3000000
KS ci ratio: 1.537853e-02	ci left: 2.103596e-02	ci right 2.136230e-02	k: 63596	n:3000000
ZNF782   3000000 perm   4001 sec   (750 perm/sec)   p_kst 2.119867e-02   p_cons 1.766667e-05   p_joint 4.796667e-04

Joint ci ratio: 1.030261e-01	ci left: 4.559595e-04	ci right 5.058070e-04	k: 1446	n:3010000
Cons ci ratio: 5.334396e-01	ci left: 1.318961e-05	ci right 2.303160e-05	k: 53	n:3010000
KS ci ratio: 1.535665e-02	ci left: 2.102631e-02	ci right 2.135202e-02	k: 63778	n:3010000
ZNF782   3010000 perm   4026 sec   (748 perm/sec)   p_kst 2.118870e-02   p_cons 1.760797e-05   p_joint 4.803987e-04

Joint ci ratio: 1.028840e-01	ci left: 4.557401e-04	ci right 5.054908e-04	k: 1450	n:3020000
Cons ci ratio: 5.334396e-01	ci left: 1.314593e-05	ci right 2.295534e-05	k: 53	n:3020000
KS ci ratio: 1.533315e-02	ci left: 2.102133e-02	ci right 2.134647e-02	k: 63974	n:3020000
ZNF782   3020000 perm   4051 sec   (745 perm/sec)   p_kst 2.118344e-02   p_cons 1.754967e-05   p_joint 4.801325e-04

Joint ci ratio: 1.028132e-01	ci left: 4.548790e-04	ci right 5.044995e-04	k: 1452	n:3030000
Cons ci ratio: 5.334396e-01	ci left: 1.310255e-05	ci right 2.287958e-05	k: 53	n:3030000
KS ci ratio: 1.530866e-02	ci left: 2.101935e-02	ci right 2.134394e-02	k: 64179	n:3030000
ZNF782   3030000 perm   4076 sec   (743 perm/sec)   p_kst 2.118119e-02   p_cons 1.749175e-05   p_joint 4.792079e-04

Joint ci ratio: 1.026016e-01	ci left: 4.553057e-04	ci right 5.048644e-04	k: 1458	n:3040000
Cons ci ratio: 5.334396e-01	ci left: 1.305945e-05	ci right 2.280432e-05	k: 53	n:3040000
KS ci ratio: 1.528162e-02	ci left: 2.102460e-02	ci right 2.134868e-02	k: 64406	n:3040000
ZNF782   3040000 perm   4102 sec   (741 perm/sec)   p_kst 2.118618e-02   p_cons 1.743421e-05   p_joint 4.796053e-04

Joint ci ratio: 1.023913e-01	ci left: 4.557297e-04	ci right 5.052267e-04	k: 1464	n:3050000
Cons ci ratio: 5.334396e-01	ci left: 1.301663e-05	ci right 2.272955e-05	k: 53	n:3050000
KS ci ratio: 1.525484e-02	ci left: 2.102948e-02	ci right 2.135307e-02	k: 64632	n:3050000
ZNF782   3050000 perm   4127 sec   (739 perm/sec)   p_kst 2.119082e-02   p_cons 1.737705e-05   p_joint 4.800000e-04

Joint ci ratio: 1.021822e-01	ci left: 4.561510e-04	ci right 5.055865e-04	k: 1470	n:3060000
Cons ci ratio: 5.334396e-01	ci left: 1.297409e-05	ci right 2.265527e-05	k: 53	n:3060000
KS ci ratio: 1.522965e-02	ci left: 2.103043e-02	ci right 2.135349e-02	k: 64846	n:3060000
ZNF782   3060000 perm   4151 sec   (737 perm/sec)   p_kst 2.119150e-02   p_cons 1.732026e-05   p_joint 4.803922e-04

Joint ci ratio: 1.020782e-01	ci left: 4.556174e-04	ci right 5.049418e-04	k: 1473	n:3070000
Cons ci ratio: 5.334397e-01	ci left: 1.293183e-05	ci right 2.258147e-05	k: 53	n:3070000
KS ci ratio: 1.520386e-02	ci left: 2.103331e-02	ci right 2.135587e-02	k: 65066	n:3070000
ZNF782   3070000 perm   4176 sec   (735 perm/sec)   p_kst 2.119414e-02   p_cons 1.726384e-05   p_joint 4.798046e-04

Joint ci ratio: 1.020436e-01	ci left: 4.544545e-04	ci right 5.036354e-04	k: 1474	n:3080000
Cons ci ratio: 5.285679e-01	ci left: 1.317096e-05	ci right 2.287601e-05	k: 54	n:3080000
KS ci ratio: 1.517951e-02	ci left: 2.103262e-02	ci right 2.135464e-02	k: 65275	n:3080000
ZNF782   3080000 perm   4202 sec   (733 perm/sec)   p_kst 2.119318e-02   p_cons 1.753247e-05   p_joint 4.785714e-04

Joint ci ratio: 1.018711e-01	ci left: 4.545607e-04	ci right 5.036649e-04	k: 1479	n:3090000
Cons ci ratio: 5.285679e-01	ci left: 1.312833e-05	ci right 2.280197e-05	k: 54	n:3090000
KS ci ratio: 1.515114e-02	ci left: 2.104322e-02	ci right 2.136480e-02	k: 65519	n:3090000
ZNF782   3090000 perm   4227 sec   (731 perm/sec)   p_kst 2.120356e-02   p_cons 1.747573e-05   p_joint 4.786408e-04

Joint ci ratio: 1.015969e-01	ci left: 4.556093e-04	ci right 5.046864e-04	k: 1487	n:3100000
Cons ci ratio: 5.285679e-01	ci left: 1.308598e-05	ci right 2.272842e-05	k: 54	n:3100000
KS ci ratio: 1.513021e-02	ci left: 2.103382e-02	ci right 2.135481e-02	k: 65701	n:3100000
ZNF782   3100000 perm   4252 sec   (729 perm/sec)   p_kst 2.119387e-02   p_cons 1.741935e-05   p_joint 4.796774e-04

Joint ci ratio: 1.014946e-01	ci left: 4.550845e-04	ci right 5.040528e-04	k: 1490	n:3110000
Cons ci ratio: 5.285679e-01	ci left: 1.304390e-05	ci right 2.265534e-05	k: 54	n:3110000
KS ci ratio: 1.510773e-02	ci left: 2.102898e-02	ci right 2.134941e-02	k: 65897	n:3110000
ZNF782   3110000 perm   4278 sec   (727 perm/sec)   p_kst 2.118875e-02   p_cons 1.736334e-05   p_joint 4.790997e-04

Joint ci ratio: 1.060778e-01	ci left: 4.142885e-04	ci right 4.610058e-04	k: 1364	n:3120000
Cons ci ratio: 5.285679e-01	ci left: 1.300210e-05	ci right 2.258272e-05	k: 54	n:3120000
KS ci ratio: 1.508186e-02	ci left: 2.103374e-02	ci right 2.135369e-02	k: 66123	n:3120000
ZNF782   3120000 perm   4304 sec   (725 perm/sec)   p_kst 2.119327e-02   p_cons 1.730769e-05   p_joint 4.371795e-04

Joint ci ratio: 1.059615e-01	ci left: 4.138980e-04	ci right 4.605168e-04	k: 1367	n:3130000
Cons ci ratio: 5.285680e-01	ci left: 1.296056e-05	ci right 2.251058e-05	k: 54	n:3130000
KS ci ratio: 1.505658e-02	ci left: 2.103720e-02	ci right 2.135666e-02	k: 66345	n:3130000
ZNF782   3130000 perm   4331 sec   (723 perm/sec)   p_kst 2.119649e-02   p_cons 1.725240e-05   p_joint 4.367412e-04

Joint ci ratio: 1.056914e-01	ci left: 4.147501e-04	ci right 4.613384e-04	k: 1374	n:3140000
Cons ci ratio: 5.285680e-01	ci left: 1.291928e-05	ci right 2.243889e-05	k: 54	n:3140000
KS ci ratio: 1.503304e-02	ci left: 2.103619e-02	ci right 2.135514e-02	k: 66553	n:3140000
ZNF782   3140000 perm   4357 sec   (721 perm/sec)   p_kst 2.119522e-02   p_cons 1.719745e-05   p_joint 4.375796e-04

Joint ci ratio: 1.055763e-01	ci left: 4.143607e-04	ci right 4.608514e-04	k: 1377	n:3150000
Cons ci ratio: 5.285680e-01	ci left: 1.287827e-05	ci right 2.236765e-05	k: 54	n:3150000
KS ci ratio: 1.501111e-02	ci left: 2.103108e-02	ci right 2.134948e-02	k: 66748	n:3150000
ZNF782   3150000 perm   4383 sec   (719 perm/sec)   p_kst 2.118984e-02   p_cons 1.714286e-05   p_joint 4.371429e-04

Joint ci ratio: 1.053472e-01	ci left: 4.148981e-04	ci right 4.613418e-04	k: 1383	n:3160000
Cons ci ratio: 5.285680e-01	ci left: 1.283751e-05	ci right 2.229687e-05	k: 54	n:3160000
KS ci ratio: 1.498790e-02	ci left: 2.102979e-02	ci right 2.134767e-02	k: 66955	n:3160000
ZNF782   3160000 perm   4409 sec   (717 perm/sec)   p_kst 2.118829e-02   p_cons 1.708861e-05   p_joint 4.376582e-04

Joint ci ratio: 1.051574e-01	ci left: 4.151250e-04	ci right 4.615053e-04	k: 1388	n:3170000
Cons ci ratio: 5.285680e-01	ci left: 1.279702e-05	ci right 2.222653e-05	k: 54	n:3170000
KS ci ratio: 1.496377e-02	ci left: 2.103133e-02	ci right 2.134872e-02	k: 67171	n:3170000
ZNF782   3170000 perm   4435 sec   (715 perm/sec)   p_kst 2.118959e-02   p_cons 1.703470e-05   p_joint 4.378549e-04

Joint ci ratio: 1.050063e-01	ci left: 4.150444e-04	ci right 4.613449e-04	k: 1392	n:3180000
Cons ci ratio: 5.285680e-01	ci left: 1.275677e-05	ci right 2.215664e-05	k: 54	n:3180000
KS ci ratio: 1.494169e-02	ci left: 2.102754e-02	ci right 2.134440e-02	k: 67370	n:3180000
ZNF782   3180000 perm   4460 sec   (713 perm/sec)   p_kst 2.118553e-02   p_cons 1.698113e-05   p_joint 4.377358e-04

Joint ci ratio: 1.046686e-01	ci left: 4.164907e-04	ci right 4.627939e-04	k: 1401	n:3190000
Cons ci ratio: 5.285681e-01	ci left: 1.271678e-05	ci right 2.208718e-05	k: 54	n:3190000
KS ci ratio: 1.491880e-02	ci left: 2.102627e-02	ci right 2.134262e-02	k: 67577	n:3190000
ZNF782   3190000 perm   4487 sec   (711 perm/sec)   p_kst 2.118401e-02   p_cons 1.692790e-05   p_joint 4.391850e-04

Joint ci ratio: 1.045941e-01	ci left: 4.157978e-04	ci right 4.619890e-04	k: 1403	n:3200000
Cons ci ratio: 5.285681e-01	ci left: 1.267704e-05	ci right 2.201816e-05	k: 54	n:3200000
KS ci ratio: 1.489489e-02	ci left: 2.102813e-02	ci right 2.134399e-02	k: 67794	n:3200000
ZNF782   3200000 perm   4513 sec   (709 perm/sec)   p_kst 2.118562e-02   p_cons 1.687500e-05   p_joint 4.384375e-04

Joint ci ratio: 1.044825e-01	ci left: 4.154126e-04	ci right 4.615088e-04	k: 1406	n:3210000
Cons ci ratio: 5.285681e-01	ci left: 1.263755e-05	ci right 2.194957e-05	k: 54	n:3210000
KS ci ratio: 1.487255e-02	ci left: 2.102593e-02	ci right 2.134129e-02	k: 67998	n:3210000
ZNF782   3210000 perm   4539 sec   (707 perm/sec)   p_kst 2.118318e-02   p_cons 1.682243e-05   p_joint 4.380062e-04

Joint ci ratio: 1.044455e-01	ci left: 4.144249e-04	ci right 4.603943e-04	k: 1407	n:3220000
Cons ci ratio: 5.285681e-01	ci left: 1.259830e-05	ci right 2.188140e-05	k: 54	n:3220000
KS ci ratio: 1.484797e-02	ci left: 2.103025e-02	ci right 2.134515e-02	k: 68223	n:3220000
ZNF782   3220000 perm   4565 sec   (705 perm/sec)   p_kst 2.118727e-02   p_cons 1.677019e-05   p_joint 4.369565e-04

Joint ci ratio: 1.042975e-01	ci left: 4.143479e-04	ci right 4.602396e-04	k: 1411	n:3230000
Cons ci ratio: 5.238274e-01	ci left: 1.282774e-05	ci right 2.216405e-05	k: 55	n:3230000
KS ci ratio: 1.482319e-02	ci left: 2.103547e-02	ci right 2.134991e-02	k: 68451	n:3230000
ZNF782   3230000 perm   4591 sec   (704 perm/sec)   p_kst 2.119226e-02   p_cons 1.702786e-05   p_joint 4.368421e-04

Joint ci ratio: 1.041133e-01	ci left: 4.145721e-04	ci right 4.604025e-04	k: 1416	n:3240000
Cons ci ratio: 5.238274e-01	ci left: 1.278815e-05	ci right 2.209564e-05	k: 55	n:3240000
KS ci ratio: 1.480006e-02	ci left: 2.103635e-02	ci right 2.135031e-02	k: 68665	n:3240000
ZNF782   3240000 perm   4617 sec   (702 perm/sec)   p_kst 2.119290e-02   p_cons 1.697531e-05   p_joint 4.370370e-04

Joint ci ratio: 1.038935e-01	ci left: 4.150946e-04	ci right 4.608800e-04	k: 1422	n:3250000
Cons ci ratio: 5.192121e-01	ci left: 1.301596e-05	ci right 2.237553e-05	k: 56	n:3250000
KS ci ratio: 1.477913e-02	ci left: 2.103140e-02	ci right 2.134484e-02	k: 68860	n:3250000
ZNF782   3250000 perm   4643 sec   (700 perm/sec)   p_kst 2.118769e-02   p_cons 1.723077e-05   p_joint 4.375385e-04

Joint ci ratio: 1.037842e-01	ci left: 4.147177e-04	ci right 4.604104e-04	k: 1425	n:3260000
Cons ci ratio: 5.192121e-01	ci left: 1.297604e-05	ci right 2.230689e-05	k: 56	n:3260000
KS ci ratio: 1.475436e-02	ci left: 2.103748e-02	ci right 2.135048e-02	k: 69091	n:3260000
ZNF782   3260000 perm   4669 sec   (698 perm/sec)   p_kst 2.119356e-02   p_cons 1.717791e-05   p_joint 4.371166e-04

Joint ci ratio: 1.035304e-01	ci left: 4.155346e-04	ci right 4.611986e-04	k: 1432	n:3270000
Cons ci ratio: 5.192121e-01	ci left: 1.293635e-05	ci right 2.223868e-05	k: 56	n:3270000
KS ci ratio: 1.473200e-02	ci left: 2.103713e-02	ci right 2.134965e-02	k: 69301	n:3270000
ZNF782   3270000 perm   4696 sec   (696 perm/sec)   p_kst 2.119297e-02   p_cons 1.712538e-05   p_joint 4.379205e-04

Joint ci ratio: 1.033862e-01	ci left: 4.154557e-04	ci right 4.610436e-04	k: 1436	n:3280000
Cons ci ratio: 5.192121e-01	ci left: 1.289691e-05	ci right 2.217088e-05	k: 56	n:3280000
KS ci ratio: 1.471222e-02	ci left: 2.102980e-02	ci right 2.134178e-02	k: 69488	n:3280000
ZNF782   3280000 perm   4723 sec   (694 perm/sec)   p_kst 2.118537e-02   p_cons 1.707317e-05   p_joint 4.378049e-04

Joint ci ratio: 1.032068e-01	ci left: 4.156734e-04	ci right 4.612012e-04	k: 1441	n:3290000
Cons ci ratio: 5.192121e-01	ci left: 1.285771e-05	ci right 2.210349e-05	k: 56	n:3290000
KS ci ratio: 1.469230e-02	ci left: 2.102311e-02	ci right 2.133457e-02	k: 69677	n:3290000
ZNF782   3290000 perm   4750 sec   (693 perm/sec)   p_kst 2.117842e-02   p_cons 1.702128e-05   p_joint 4.379939e-04

Joint ci ratio: 1.029571e-01	ci left: 4.164803e-04	ci right 4.619795e-04	k: 1448	n:3300000
Cons ci ratio: 5.192121e-01	ci left: 1.281875e-05	ci right 2.203651e-05	k: 56	n:3300000
KS ci ratio: 1.467086e-02	ci left: 2.102100e-02	ci right 2.133197e-02	k: 69881	n:3300000
ZNF782   3300000 perm   4777 sec   (691 perm/sec)   p_kst 2.117606e-02   p_cons 1.696970e-05   p_joint 4.387879e-04

Joint ci ratio: 1.027093e-01	ci left: 4.172825e-04	ci right 4.627530e-04	k: 1455	n:3310000
Cons ci ratio: 5.192121e-01	ci left: 1.278002e-05	ci right 2.196993e-05	k: 56	n:3310000
KS ci ratio: 1.464844e-02	ci left: 2.102190e-02	ci right 2.133241e-02	k: 70095	n:3310000
ZNF782   3310000 perm   4805 sec   (689 perm/sec)   p_kst 2.117674e-02   p_cons 1.691843e-05   p_joint 4.395770e-04

Joint ci ratio: 1.026741e-01	ci left: 4.163191e-04	ci right 4.616681e-04	k: 1456	n:3320000
Cons ci ratio: 5.192121e-01	ci left: 1.274153e-05	ci right 2.190376e-05	k: 56	n:3320000
KS ci ratio: 1.462613e-02	ci left: 2.102281e-02	ci right 2.133285e-02	k: 70309	n:3320000
ZNF782   3320000 perm   4832 sec   (687 perm/sec)   p_kst 2.117741e-02   p_cons 1.686747e-05   p_joint 4.385542e-04

Joint ci ratio: 1.026037e-01	ci left: 4.156540e-04	ci right 4.608977e-04	k: 1458	n:3330000
Cons ci ratio: 5.192122e-01	ci left: 1.270327e-05	ci right 2.183798e-05	k: 56	n:3330000
KS ci ratio: 1.460550e-02	ci left: 2.101922e-02	ci right 2.132876e-02	k: 70508	n:3330000
ZNF782   3330000 perm   4858 sec   (685 perm/sec)   p_kst 2.117357e-02   p_cons 1.681682e-05   p_joint 4.378378e-04

Joint ci ratio: 1.025335e-01	ci left: 4.149930e-04	ci right 4.601319e-04	k: 1460	n:3340000
Cons ci ratio: 5.192122e-01	ci left: 1.266523e-05	ci right 2.177260e-05	k: 56	n:3340000
KS ci ratio: 1.458633e-02	ci left: 2.101177e-02	ci right 2.132080e-02	k: 70694	n:3340000
ZNF782   3340000 perm   4886 sec   (684 perm/sec)   p_kst 2.116587e-02   p_cons 1.676647e-05   p_joint 4.371257e-04

Joint ci ratio: 1.022887e-01	ci left: 4.157903e-04	ci right 4.609015e-04	k: 1467	n:3350000
Cons ci ratio: 5.147167e-01	ci left: 1.288696e-05	ci right 2.204475e-05	k: 57	n:3350000
KS ci ratio: 1.456483e-02	ci left: 2.101121e-02	ci right 2.131977e-02	k: 70903	n:3350000
ZNF782   3350000 perm   4913 sec   (682 perm/sec)   p_kst 2.116507e-02   p_cons 1.701493e-05   p_joint 4.379104e-04

Joint ci ratio: 1.020803e-01	ci left: 4.162929e-04	ci right 4.613611e-04	k: 1473	n:3360000
Cons ci ratio: 5.147167e-01	ci left: 1.284861e-05	ci right 2.197914e-05	k: 57	n:3360000
KS ci ratio: 1.454498e-02	ci left: 2.100620e-02	ci right 2.131427e-02	k: 71097	n:3360000
ZNF782   3360000 perm   4940 sec   (680 perm/sec)   p_kst 2.115982e-02   p_cons 1.696429e-05   p_joint 4.383929e-04

Joint ci ratio: 1.019421e-01	ci left: 4.162142e-04	ci right 4.612092e-04	k: 1477	n:3370000
Cons ci ratio: 5.103360e-01	ci left: 1.306882e-05	ci right 2.224874e-05	k: 58	n:3370000
KS ci ratio: 1.452199e-02	ci left: 2.101039e-02	ci right 2.131803e-02	k: 71322	n:3370000
ZNF782   3370000 perm   4967 sec   (678 perm/sec)   p_kst 2.116380e-02   p_cons 1.721068e-05   p_joint 4.382789e-04

Joint ci ratio: 1.017358e-01	ci left: 4.167128e-04	ci right 4.616651e-04	k: 1483	n:3380000
Cons ci ratio: 5.103360e-01	ci left: 1.303015e-05	ci right 2.218292e-05	k: 58	n:3380000
KS ci ratio: 1.450035e-02	ci left: 2.101102e-02	ci right 2.131820e-02	k: 71535	n:3380000
ZNF782   3380000 perm   4994 sec   (677 perm/sec)   p_kst 2.116420e-02   p_cons 1.715976e-05   p_joint 4.387574e-04

Joint ci ratio: 1.016331e-01	ci left: 4.163460e-04	ci right 4.612107e-04	k: 1486	n:3390000
Cons ci ratio: 5.103360e-01	ci left: 1.299172e-05	ci right 2.211748e-05	k: 58	n:3390000
KS ci ratio: 1.447737e-02	ci left: 2.101576e-02	ci right 2.132252e-02	k: 71762	n:3390000
ZNF782   3390000 perm   5021 sec   (675 perm/sec)   p_kst 2.116873e-02   p_cons 1.710914e-05   p_joint 4.383481e-04

Joint ci ratio: 1.015649e-01	ci left: 4.156947e-04	ci right 4.604574e-04	k: 1488	n:3400000
Cons ci ratio: 5.103360e-01	ci left: 1.295350e-05	ci right 2.205243e-05	k: 58	n:3400000
KS ci ratio: 1.445582e-02	ci left: 2.101666e-02	ci right 2.132298e-02	k: 71976	n:3400000
ZNF782   3400000 perm   5049 sec   (673 perm/sec)   p_kst 2.116941e-02   p_cons 1.705882e-05   p_joint 4.376471e-04

Joint ci ratio: 1.012592e-01	ci left: 4.170480e-04	ci right 4.618132e-04	k: 1497	n:3410000
Cons ci ratio: 5.060653e-01	ci left: 1.317115e-05	ci right 2.231833e-05	k: 59	n:3410000
KS ci ratio: 1.443397e-02	ci left: 2.101873e-02	ci right 2.132461e-02	k: 72194	n:3410000
ZNF782   3410000 perm   5076 sec   (672 perm/sec)   p_kst 2.117126e-02   p_cons 1.730205e-05   p_joint 4.390029e-04

Joint ci ratio: 1.011918e-01	ci left: 4.163986e-04	ci right 4.610625e-04	k: 1499	n:3420000
Cons ci ratio: 5.060653e-01	ci left: 1.313264e-05	ci right 2.225307e-05	k: 59	n:3420000
KS ci ratio: 1.441455e-02	ci left: 2.101408e-02	ci right 2.131948e-02	k: 72389	n:3420000
ZNF782   3420000 perm   5104 sec   (670 perm/sec)   p_kst 2.116637e-02   p_cons 1.725146e-05   p_joint 4.383041e-04

Joint ci ratio: 1.010571e-01	ci left: 4.163213e-04	ci right 4.609140e-04	k: 1503	n:3430000
Cons ci ratio: 5.060653e-01	ci left: 1.309435e-05	ci right 2.218820e-05	k: 59	n:3430000
KS ci ratio: 1.439450e-02	ci left: 2.101150e-02	ci right 2.131643e-02	k: 72591	n:3430000
ZNF782   3430000 perm   5132 sec   (668 perm/sec)   p_kst 2.116356e-02   p_cons 1.720117e-05   p_joint 4.381924e-04

Joint ci ratio: 1.009230e-01	ci left: 4.162445e-04	ci right 4.607663e-04	k: 1507	n:3440000
Cons ci ratio: 5.060653e-01	ci left: 1.305628e-05	ci right 2.212370e-05	k: 59	n:3440000
KS ci ratio: 1.437343e-02	ci left: 2.101211e-02	ci right 2.131660e-02	k: 72804	n:3440000
ZNF782   3440000 perm   5160 sec   (667 perm/sec)   p_kst 2.116395e-02   p_cons 1.715116e-05   p_joint 4.380814e-04

Joint ci ratio: 1.008228e-01	ci left: 4.158856e-04	ci right 4.603222e-04	k: 1510	n:3450000
Cons ci ratio: 5.060653e-01	ci left: 1.301844e-05	ci right 2.205957e-05	k: 59	n:3450000
KS ci ratio: 1.435244e-02	ci left: 2.101273e-02	ci right 2.131677e-02	k: 73017	n:3450000
ZNF782   3450000 perm   5188 sec   (665 perm/sec)   p_kst 2.116435e-02   p_cons 1.710145e-05   p_joint 4.376812e-04

Joint ci ratio: 1.007562e-01	ci left: 4.152471e-04	ci right 4.595844e-04	k: 1512	n:3460000
Cons ci ratio: 5.060654e-01	ci left: 1.298081e-05	ci right 2.199581e-05	k: 59	n:3460000
KS ci ratio: 1.433115e-02	ci left: 2.101449e-02	ci right 2.131811e-02	k: 73234	n:3460000
ZNF782   3460000 perm   5215 sec   (663 perm/sec)   p_kst 2.116590e-02   p_cons 1.705202e-05   p_joint 4.369942e-04

Joint ci ratio: 1.006897e-01	ci left: 4.146122e-04	ci right 4.588508e-04	k: 1514	n:3470000
Cons ci ratio: 5.060654e-01	ci left: 1.294341e-05	ci right 2.193242e-05	k: 59	n:3470000
KS ci ratio: 1.431125e-02	ci left: 2.101251e-02	ci right 2.131567e-02	k: 73438	n:3470000
ZNF782   3470000 perm   5243 sec   (662 perm/sec)   p_kst 2.116369e-02   p_cons 1.700288e-05   p_joint 4.363112e-04

Joint ci ratio: 1.005901e-01	ci left: 4.142612e-04	ci right 4.584161e-04	k: 1517	n:3480000
Cons ci ratio: 5.060654e-01	ci left: 1.290621e-05	ci right 2.186940e-05	k: 59	n:3480000
KS ci ratio: 1.429074e-02	ci left: 2.101254e-02	ci right 2.131527e-02	k: 73649	n:3480000
ZNF782   3480000 perm   5272 sec   (660 perm/sec)   p_kst 2.116351e-02   p_cons 1.695402e-05   p_joint 4.359195e-04

Joint ci ratio: 1.004249e-01	ci left: 4.144708e-04	ci right 4.585712e-04	k: 1522	n:3490000
Cons ci ratio: 5.019001e-01	ci left: 1.311931e-05	ci right 2.212943e-05	k: 60	n:3490000
KS ci ratio: 1.426933e-02	ci left: 2.101543e-02	ci right 2.131774e-02	k: 73870	n:3490000
ZNF782   3490000 perm   5301 sec   (658 perm/sec)   p_kst 2.116619e-02   p_cons 1.719198e-05   p_joint 4.361032e-04

Joint ci ratio: 1.002933e-01	ci left: 4.144008e-04	ci right 4.584325e-04	k: 1526	n:3500000
Cons ci ratio: 5.019001e-01	ci left: 1.308183e-05	ci right 2.206620e-05	k: 60	n:3500000
KS ci ratio: 1.424850e-02	ci left: 2.101688e-02	ci right 2.131877e-02	k: 74086	n:3500000
ZNF782   3500000 perm   5330 sec   (657 perm/sec)   p_kst 2.116743e-02   p_cons 1.714286e-05   p_joint 4.360000e-04

Joint ci ratio: 1.001949e-01	ci left: 4.140535e-04	ci right 4.580026e-04	k: 1529	n:3510000
Cons ci ratio: 5.019001e-01	ci left: 1.304456e-05	ci right 2.200333e-05	k: 60	n:3510000
KS ci ratio: 1.422640e-02	ci left: 2.102230e-02	ci right 2.132379e-02	k: 74316	n:3510000
ZNF782   3510000 perm   5358 sec   (655 perm/sec)   p_kst 2.117265e-02   p_cons 1.709402e-05   p_joint 4.356125e-04

Joint ci ratio: 1.000642e-01	ci left: 4.139851e-04	ci right 4.578663e-04	k: 1533	n:3520000
Cons ci ratio: 5.019001e-01	ci left: 1.300750e-05	ci right 2.194083e-05	k: 60	n:3520000
KS ci ratio: 1.420362e-02	ci left: 2.102995e-02	ci right 2.133107e-02	k: 74554	n:3520000
ZNF782   3520000 perm   5386 sec   (653 perm/sec)   p_kst 2.118011e-02   p_cons 1.704545e-05   p_joint 4.355114e-04

Joint ci ratio: 9.990150e-02	ci left: 4.141933e-04	ci right 4.580210e-04	k: 1538	n:3530000
Cons ci ratio: 5.019002e-01	ci left: 1.297065e-05	ci right 2.187867e-05	k: 60	n:3530000
KS ci ratio: 1.418569e-02	ci left: 2.102373e-02	ci right 2.132437e-02	k: 74743	n:3530000
ZNF782   3530000 perm   5415 sec   (652 perm/sec)   p_kst 2.117365e-02   p_cons 1.699717e-05   p_joint 4.356941e-04

Joint ci ratio: 9.970730e-02	ci left: 4.146759e-04	ci right 4.584644e-04	k: 1544	n:3540000
Cons ci ratio: 5.019002e-01	ci left: 1.293401e-05	ci right 2.181687e-05	k: 60	n:3540000
KS ci ratio: 1.416601e-02	ci left: 2.102289e-02	ci right 2.132310e-02	k: 74951	n:3540000
ZNF782   3540000 perm   5444 sec   (650 perm/sec)   p_kst 2.117260e-02   p_cons 1.694915e-05   p_joint 4.361582e-04

Joint ci ratio: 9.967510e-02	ci left: 4.137825e-04	ci right 4.574617e-04	k: 1545	n:3550000
Cons ci ratio: 5.019002e-01	ci left: 1.289758e-05	ci right 2.175541e-05	k: 60	n:3550000
KS ci ratio: 1.414688e-02	ci left: 2.102065e-02	ci right 2.132042e-02	k: 75154	n:3550000
ZNF782   3550000 perm   5474 sec   (649 perm/sec)   p_kst 2.117014e-02   p_cons 1.690141e-05   p_joint 4.352113e-04

Joint ci ratio: 9.961072e-02	ci left: 4.131679e-04	ci right 4.567525e-04	k: 1547	n:3560000
Cons ci ratio: 5.019002e-01	ci left: 1.286135e-05	ci right 2.169430e-05	k: 60	n:3560000
KS ci ratio: 1.412630e-02	ci left: 2.102290e-02	ci right 2.132226e-02	k: 75373	n:3560000
ZNF782   3560000 perm   5503 sec   (647 perm/sec)   p_kst 2.117219e-02   p_cons 1.685393e-05   p_joint 4.345506e-04

Joint ci ratio: 9.941821e-02	ci left: 4.136495e-04	ci right 4.571955e-04	k: 1553	n:3570000
Cons ci ratio: 4.978361e-01	ci left: 1.307010e-05	ci right 2.194870e-05	k: 61	n:3570000
KS ci ratio: 1.411000e-02	ci left: 2.101286e-02	ci right 2.131173e-02	k: 75548	n:3570000
ZNF782   3570000 perm   5532 sec   (645 perm/sec)   p_kst 2.116190e-02   p_cons 1.708683e-05   p_joint 4.350140e-04

Joint ci ratio: 9.932241e-02	ci left: 4.133112e-04	ci right 4.567772e-04	k: 1556	n:3580000
Cons ci ratio: 4.978361e-01	ci left: 1.303359e-05	ci right 2.188739e-05	k: 61	n:3580000
KS ci ratio: 1.408939e-02	ci left: 2.101568e-02	ci right 2.131415e-02	k: 75769	n:3580000
ZNF782   3580000 perm   5561 sec   (644 perm/sec)   p_kst 2.116453e-02   p_cons 1.703911e-05   p_joint 4.346369e-04

Joint ci ratio: 9.919508e-02	ci left: 4.132464e-04	ci right 4.566467e-04	k: 1560	n:3590000
Cons ci ratio: 4.978361e-01	ci left: 1.299729e-05	ci right 2.182642e-05	k: 61	n:3590000
KS ci ratio: 1.407142e-02	ci left: 2.101099e-02	ci right 2.130901e-02	k: 75963	n:3590000
ZNF782   3590000 perm   5590 sec   (642 perm/sec)   p_kst 2.115961e-02   p_cons 1.699164e-05   p_joint 4.345404e-04

Joint ci ratio: 9.906823e-02	ci left: 4.131821e-04	ci right 4.565169e-04	k: 1564	n:3600000
Cons ci ratio: 4.978361e-01	ci left: 1.296118e-05	ci right 2.176580e-05	k: 61	n:3600000
KS ci ratio: 1.405154e-02	ci left: 2.101213e-02	ci right 2.130975e-02	k: 76178	n:3600000
ZNF782   3600000 perm   5619 sec   (641 perm/sec)   p_kst 2.116056e-02   p_cons 1.694444e-05   p_joint 4.344444e-04

Joint ci ratio: 9.884738e-02	ci left: 4.139286e-04	ci right 4.572394e-04	k: 1571	n:3610000
Cons ci ratio: 4.978362e-01	ci left: 1.292528e-05	ci right 2.170550e-05	k: 61	n:3610000
KS ci ratio: 1.403044e-02	ci left: 2.101714e-02	ci right 2.131438e-02	k: 76407	n:3610000
ZNF782   3610000 perm   5649 sec   (639 perm/sec)   p_kst 2.116537e-02   p_cons 1.689751e-05   p_joint 4.351801e-04

Joint ci ratio: 9.869054e-02	ci left: 4.141323e-04	ci right 4.573916e-04	k: 1576	n:3620000
Cons ci ratio: 4.978362e-01	ci left: 1.288957e-05	ci right 2.164554e-05	k: 61	n:3620000
KS ci ratio: 1.401372e-02	ci left: 2.100946e-02	ci right 2.130623e-02	k: 76590	n:3620000
ZNF782   3620000 perm   5680 sec   (637 perm/sec)   p_kst 2.115746e-02   p_cons 1.685083e-05   p_joint 4.353591e-04

Joint ci ratio: 9.856562e-02	ci left: 4.140662e-04	ci right 4.572607e-04	k: 1580	n:3630000
Cons ci ratio: 4.978362e-01	ci left: 1.285406e-05	ci right 2.158591e-05	k: 61	n:3630000
KS ci ratio: 1.399511e-02	ci left: 2.100758e-02	ci right 2.130393e-02	k: 76794	n:3630000
ZNF782   3630000 perm   5709 sec   (636 perm/sec)   p_kst 2.115537e-02   p_cons 1.680441e-05   p_joint 4.352617e-04

Joint ci ratio: 9.850337e-02	ci left: 4.134645e-04	ci right 4.565674e-04	k: 1582	n:3640000
Cons ci ratio: 4.978362e-01	ci left: 1.281875e-05	ci right 2.152661e-05	k: 61	n:3640000
KS ci ratio: 1.397695e-02	ci left: 2.100462e-02	ci right 2.130054e-02	k: 76994	n:3640000
ZNF782   3640000 perm   5738 sec   (634 perm/sec)   p_kst 2.115220e-02   p_cons 1.675824e-05   p_joint 4.346154e-04

Joint ci ratio: 1.072268e-01	ci left: 3.463976e-04	ci right 3.859089e-04	k: 1335	n:3650000
Cons ci ratio: 4.978362e-01	ci left: 1.278363e-05	ci right 2.146763e-05	k: 61	n:3650000
KS ci ratio: 1.395820e-02	ci left: 2.100359e-02	ci right 2.129909e-02	k: 77201	n:3650000
ZNF782   3650000 perm   5768 sec   (633 perm/sec)   p_kst 2.115096e-02   p_cons 1.671233e-05   p_joint 3.657534e-04

Joint ci ratio: 1.070267e-01	ci left: 3.467807e-04	ci right 3.862572e-04	k: 1340	n:3660000
Cons ci ratio: 4.938693e-01	ci left: 1.298774e-05	ci right 2.171612e-05	k: 62	n:3660000
KS ci ratio: 1.393853e-02	ci left: 2.100556e-02	ci right 2.130067e-02	k: 77419	n:3660000
ZNF782   3660000 perm   5797 sec   (631 perm/sec)   p_kst 2.115273e-02   p_cons 1.693989e-05   p_joint 3.661202e-04

Joint ci ratio: 1.069072e-01	ci left: 3.466314e-04	ci right 3.860440e-04	k: 1343	n:3670000
Cons ci ratio: 4.938693e-01	ci left: 1.295235e-05	ci right 2.165695e-05	k: 62	n:3670000
KS ci ratio: 1.392122e-02	ci left: 2.100073e-02	ci right 2.129540e-02	k: 77612	n:3670000
ZNF782   3670000 perm   5826 sec   (630 perm/sec)   p_kst 2.114768e-02   p_cons 1.689373e-05   p_joint 3.659401e-04

Joint ci ratio: 1.067088e-01	ci left: 3.470119e-04	ci right 3.863900e-04	k: 1348	n:3680000
Cons ci ratio: 4.938693e-01	ci left: 1.291716e-05	ci right 2.159810e-05	k: 62	n:3680000
KS ci ratio: 1.390006e-02	ci left: 2.100757e-02	ci right 2.130188e-02	k: 77848	n:3680000
ZNF782   3680000 perm   5855 sec   (628 perm/sec)   p_kst 2.115435e-02   p_cons 1.684783e-05   p_joint 3.663043e-04

Joint ci ratio: 1.065510e-01	ci left: 3.471265e-04	ci right 3.864558e-04	k: 1352	n:3690000
Cons ci ratio: 4.938693e-01	ci left: 1.288215e-05	ci right 2.153957e-05	k: 62	n:3690000
KS ci ratio: 1.388235e-02	ci left: 2.100438e-02	ci right 2.129827e-02	k: 78047	n:3690000
ZNF782   3690000 perm   5885 sec   (627 perm/sec)   p_kst 2.115095e-02   p_cons 1.680217e-05   p_joint 3.663957e-04

Joint ci ratio: 1.064331e-01	ci left: 3.469776e-04	ci right 3.862437e-04	k: 1355	n:3700000
Cons ci ratio: 4.938693e-01	ci left: 1.284733e-05	ci right 2.148136e-05	k: 62	n:3700000
KS ci ratio: 1.386407e-02	ci left: 2.100309e-02	ci right 2.129658e-02	k: 78253	n:3700000
ZNF782   3700000 perm   5914 sec   (626 perm/sec)   p_kst 2.114946e-02   p_cons 1.675676e-05   p_joint 3.662162e-04

Joint ci ratio: 1.063939e-01	ci left: 3.463047e-04	ci right 3.854793e-04	k: 1356	n:3710000
Cons ci ratio: 4.938693e-01	ci left: 1.281270e-05	ci right 2.142345e-05	k: 62	n:3710000
KS ci ratio: 1.384452e-02	ci left: 2.100584e-02	ci right 2.129895e-02	k: 78474	n:3710000
ZNF782   3710000 perm   5944 sec   (624 perm/sec)   p_kst 2.115202e-02   p_cons 1.671159e-05   p_joint 3.654987e-04

Joint ci ratio: 1.062374e-01	ci left: 3.464204e-04	ci right 3.855469e-04	k: 1360	n:3720000
Cons ci ratio: 4.938693e-01	ci left: 1.277826e-05	ci right 2.136586e-05	k: 62	n:3720000
KS ci ratio: 1.382397e-02	ci left: 2.101179e-02	ci right 2.130454e-02	k: 78707	n:3720000
ZNF782   3720000 perm   5974 sec   (623 perm/sec)   p_kst 2.115780e-02   p_cons 1.666667e-05   p_joint 3.655914e-04

Joint ci ratio: 1.060428e-01	ci left: 3.467966e-04	ci right 3.858893e-04	k: 1365	n:3730000
Cons ci ratio: 4.938693e-01	ci left: 1.274400e-05	ci right 2.130858e-05	k: 62	n:3730000
KS ci ratio: 1.380298e-02	ci left: 2.101932e-02	ci right 2.131172e-02	k: 78946	n:3730000
ZNF782   3730000 perm   6004 sec   (621 perm/sec)   p_kst 2.116515e-02   p_cons 1.662198e-05   p_joint 3.659517e-04

Joint ci ratio: 1.058106e-01	ci left: 3.474311e-04	ci right 3.865043e-04	k: 1371	n:3740000
Cons ci ratio: 4.899957e-01	ci left: 1.294412e-05	ci right 2.155192e-05	k: 63	n:3740000
KS ci ratio: 1.378422e-02	ci left: 2.102040e-02	ci right 2.131242e-02	k: 79161	n:3740000
ZNF782   3740000 perm   6035 sec   (620 perm/sec)   p_kst 2.116604e-02   p_cons 1.684492e-05   p_joint 3.665775e-04

Joint ci ratio: 1.056183e-01	ci left: 3.478027e-04	ci right 3.868422e-04	k: 1376	n:3750000
Cons ci ratio: 4.899958e-01	ci left: 1.290960e-05	ci right 2.149445e-05	k: 63	n:3750000
KS ci ratio: 1.376712e-02	ci left: 2.101670e-02	ci right 2.130831e-02	k: 79358	n:3750000
ZNF782   3750000 perm   6065 sec   (618 perm/sec)   p_kst 2.116213e-02   p_cons 1.680000e-05   p_joint 3.669333e-04

Joint ci ratio: 1.055035e-01	ci left: 3.476545e-04	ci right 3.866323e-04	k: 1379	n:3760000
Cons ci ratio: 4.899958e-01	ci left: 1.287527e-05	ci right 2.143728e-05	k: 63	n:3760000
KS ci ratio: 1.374727e-02	ci left: 2.102150e-02	ci right 2.131275e-02	k: 79587	n:3760000
ZNF782   3760000 perm   6095 sec   (617 perm/sec)   p_kst 2.116676e-02   p_cons 1.675532e-05   p_joint 3.667553e-04

Joint ci ratio: 1.053128e-01	ci left: 3.480237e-04	ci right 3.869680e-04	k: 1384	n:3770000
Cons ci ratio: 4.899958e-01	ci left: 1.284112e-05	ci right 2.138042e-05	k: 63	n:3770000
KS ci ratio: 1.373005e-02	ci left: 2.101861e-02	ci right 2.130945e-02	k: 79787	n:3770000
ZNF782   3770000 perm   6125 sec   (616 perm/sec)   p_kst 2.116366e-02   p_cons 1.671088e-05   p_joint 3.671088e-04

Joint ci ratio: 1.051990e-01	ci left: 3.478757e-04	ci right 3.867588e-04	k: 1387	n:3780000
Cons ci ratio: 4.899958e-01	ci left: 1.280715e-05	ci right 2.132386e-05	k: 63	n:3780000
KS ci ratio: 1.370852e-02	ci left: 2.102892e-02	ci right 2.131944e-02	k: 80037	n:3780000
ZNF782   3780000 perm   6156 sec   (614 perm/sec)   p_kst 2.117381e-02   p_cons 1.666667e-05   p_joint 3.669312e-04

Joint ci ratio: 1.051611e-01	ci left: 3.472147e-04	ci right 3.860091e-04	k: 1388	n:3790000
Cons ci ratio: 4.899958e-01	ci left: 1.277336e-05	ci right 2.126759e-05	k: 63	n:3790000
KS ci ratio: 1.369032e-02	ci left: 2.102944e-02	ci right 2.131958e-02	k: 80250	n:3790000
ZNF782   3790000 perm   6186 sec   (613 perm/sec)   p_kst 2.117414e-02   p_cons 1.662269e-05   p_joint 3.662269e-04

Joint ci ratio: 1.050855e-01	ci left: 3.468135e-04	ci right 3.855334e-04	k: 1390	n:3800000
Cons ci ratio: 4.899958e-01	ci left: 1.273974e-05	ci right 2.121163e-05	k: 63	n:3800000
KS ci ratio: 1.367227e-02	ci left: 2.102970e-02	ci right 2.131946e-02	k: 80462	n:3800000
ZNF782   3800000 perm   6217 sec   (611 perm/sec)   p_kst 2.117421e-02   p_cons 1.657895e-05   p_joint 3.657895e-04

Joint ci ratio: 1.049724e-01	ci left: 3.466699e-04	ci right 3.853296e-04	k: 1393	n:3810000
Cons ci ratio: 4.899958e-01	ci left: 1.270630e-05	ci right 2.115595e-05	k: 63	n:3810000
KS ci ratio: 1.365758e-02	ci left: 2.102001e-02	ci right 2.130932e-02	k: 80636	n:3810000
ZNF782   3810000 perm   6248 sec   (610 perm/sec)   p_kst 2.116430e-02   p_cons 1.653543e-05   p_joint 3.656168e-04

Joint ci ratio: 1.047846e-01	ci left: 3.470370e-04	ci right 3.856641e-04	k: 1398	n:3820000
Cons ci ratio: 4.899958e-01	ci left: 1.267304e-05	ci right 2.110057e-05	k: 63	n:3820000
KS ci ratio: 1.363931e-02	ci left: 2.102134e-02	ci right 2.131028e-02	k: 80852	n:3820000
ZNF782   3820000 perm   6279 sec   (608 perm/sec)   p_kst 2.116545e-02   p_cons 1.649215e-05   p_joint 3.659686e-04

Joint ci ratio: 1.046352e-01	ci left: 3.471479e-04	ci right 3.857289e-04	k: 1402	n:3830000
Cons ci ratio: 4.899958e-01	ci left: 1.263995e-05	ci right 2.104548e-05	k: 63	n:3830000
KS ci ratio: 1.361984e-02	ci left: 2.102656e-02	ci right 2.131516e-02	k: 81083	n:3830000
ZNF782   3830000 perm   6310 sec   (607 perm/sec)   p_kst 2.117050e-02   p_cons 1.644909e-05   p_joint 3.660574e-04

Joint ci ratio: 1.044863e-01	ci left: 3.472583e-04	ci right 3.857933e-04	k: 1406	n:3840000
Cons ci ratio: 4.899959e-01	ci left: 1.260704e-05	ci right 2.099067e-05	k: 63	n:3840000
KS ci ratio: 1.360061e-02	ci left: 2.103124e-02	ci right 2.131949e-02	k: 81312	n:3840000
ZNF782   3840000 perm   6341 sec   (606 perm/sec)   p_kst 2.117500e-02   p_cons 1.640625e-05   p_joint 3.661458e-04

Joint ci ratio: 1.043381e-01	ci left: 3.473682e-04	ci right 3.858573e-04	k: 1410	n:3850000
Cons ci ratio: 4.899959e-01	ci left: 1.257429e-05	ci right 2.093615e-05	k: 63	n:3850000
KS ci ratio: 1.358198e-02	ci left: 2.103434e-02	ci right 2.132223e-02	k: 81535	n:3850000
ZNF782   3850000 perm   6372 sec   (604 perm/sec)   p_kst 2.117792e-02   p_cons 1.636364e-05   p_joint 3.662338e-04

Joint ci ratio: 1.041537e-01	ci left: 3.477298e-04	ci right 3.861868e-04	k: 1415	n:3860000
Cons ci ratio: 4.862120e-01	ci left: 1.276888e-05	ci right 2.117264e-05	k: 64	n:3860000
KS ci ratio: 1.356309e-02	ci left: 2.103845e-02	ci right 2.132600e-02	k: 81762	n:3860000
ZNF782   3860000 perm   6402 sec   (603 perm/sec)   p_kst 2.118187e-02   p_cons 1.658031e-05   p_joint 3.665803e-04

Joint ci ratio: 1.040069e-01	ci left: 3.478380e-04	ci right 3.862494e-04	k: 1419	n:3870000
Cons ci ratio: 4.862120e-01	ci left: 1.273589e-05	ci right 2.111793e-05	k: 64	n:3870000
KS ci ratio: 1.354512e-02	ci left: 2.103997e-02	ci right 2.132715e-02	k: 81979	n:3870000
ZNF782   3870000 perm   6433 sec   (602 perm/sec)   p_kst 2.118320e-02   p_cons 1.653747e-05   p_joint 3.666667e-04

Joint ci ratio: 1.038243e-01	ci left: 3.481967e-04	ci right 3.865760e-04	k: 1424	n:3880000
Cons ci ratio: 4.862120e-01	ci left: 1.270306e-05	ci right 2.106350e-05	k: 64	n:3880000
KS ci ratio: 1.352604e-02	ci left: 2.104508e-02	ci right 2.133193e-02	k: 82210	n:3880000
ZNF782   3880000 perm   6464 sec   (600 perm/sec)   p_kst 2.118814e-02   p_cons 1.649485e-05   p_joint 3.670103e-04

Joint ci ratio: 1.037151e-01	ci left: 3.480528e-04	ci right 3.863735e-04	k: 1427	n:3890000
Cons ci ratio: 4.862120e-01	ci left: 1.267041e-05	ci right 2.100935e-05	k: 64	n:3890000
KS ci ratio: 1.350805e-02	ci left: 2.104709e-02	ci right 2.133358e-02	k: 82429	n:3890000
ZNF782   3890000 perm   6496 sec   (599 perm/sec)   p_kst 2.118997e-02   p_cons 1.645244e-05   p_joint 3.668380e-04

Joint ci ratio: 1.035340e-01	ci left: 3.484092e-04	ci right 3.866980e-04	k: 1432	n:3900000
Cons ci ratio: 4.862120e-01	ci left: 1.263792e-05	ci right 2.095548e-05	k: 64	n:3900000
KS ci ratio: 1.348954e-02	ci left: 2.105087e-02	ci right 2.133702e-02	k: 82655	n:3900000
ZNF782   3900000 perm   6528 sec   (597 perm/sec)   p_kst 2.119359e-02   p_cons 1.641026e-05   p_joint 3.671795e-04

Joint ci ratio: 1.034619e-01	ci left: 3.480164e-04	ci right 3.862338e-04	k: 1434	n:3910000
Cons ci ratio: 4.862121e-01	ci left: 1.260560e-05	ci right 2.090189e-05	k: 64	n:3910000
KS ci ratio: 1.347236e-02	ci left: 2.105082e-02	ci right 2.133659e-02	k: 82866	n:3910000
ZNF782   3910000 perm   6559 sec   (596 perm/sec)   p_kst 2.119335e-02   p_cons 1.636829e-05   p_joint 3.667519e-04

Joint ci ratio: 1.033899e-01	ci left: 3.476256e-04	ci right 3.857719e-04	k: 1436	n:3920000
Cons ci ratio: 4.862121e-01	ci left: 1.257344e-05	ci right 2.084857e-05	k: 64	n:3920000
KS ci ratio: 1.345574e-02	ci left: 2.104924e-02	ci right 2.133464e-02	k: 83071	n:3920000
ZNF782   3920000 perm   6590 sec   (595 perm/sec)   p_kst 2.119158e-02   p_cons 1.632653e-05   p_joint 3.663265e-04

Joint ci ratio: 1.033180e-01	ci left: 3.472368e-04	ci right 3.853123e-04	k: 1438	n:3930000
Cons ci ratio: 4.862121e-01	ci left: 1.254145e-05	ci right 2.079552e-05	k: 64	n:3930000
KS ci ratio: 1.343860e-02	ci left: 2.104944e-02	ci right 2.133447e-02	k: 83283	n:3930000
ZNF782   3930000 perm   6622 sec   (593 perm/sec)   p_kst 2.119160e-02   p_cons 1.628499e-05   p_joint 3.659033e-04

Joint ci ratio: 1.031747e-01	ci left: 3.473445e-04	ci right 3.853758e-04	k: 1442	n:3940000
Cons ci ratio: 4.862121e-01	ci left: 1.250962e-05	ci right 2.074274e-05	k: 64	n:3940000
KS ci ratio: 1.342309e-02	ci left: 2.104483e-02	ci right 2.132948e-02	k: 83476	n:3940000
ZNF782   3940000 perm   6653 sec   (592 perm/sec)   p_kst 2.118680e-02   p_cons 1.624365e-05   p_joint 3.659898e-04

Joint ci ratio: 1.031033e-01	ci left: 3.469584e-04	ci right 3.849196e-04	k: 1444	n:3950000
Cons ci ratio: 4.862121e-01	ci left: 1.247795e-05	ci right 2.069022e-05	k: 64	n:3950000
KS ci ratio: 1.340485e-02	ci left: 2.104883e-02	ci right 2.133314e-02	k: 83703	n:3950000
ZNF782   3950000 perm   6685 sec   (591 perm/sec)   p_kst 2.119063e-02   p_cons 1.620253e-05   p_joint 3.655696e-04

Joint ci ratio: 1.029609e-01	ci left: 3.470663e-04	ci right 3.849837e-04	k: 1448	n:3960000
Cons ci ratio: 4.862121e-01	ci left: 1.244644e-05	ci right 2.063798e-05	k: 64	n:3960000
KS ci ratio: 1.338733e-02	ci left: 2.105079e-02	ci right 2.133475e-02	k: 83922	n:3960000
ZNF782   3960000 perm   6718 sec   (589 perm/sec)   p_kst 2.119242e-02   p_cons 1.616162e-05   p_joint 3.656566e-04

Joint ci ratio: 1.028191e-01	ci left: 3.471737e-04	ci right 3.850474e-04	k: 1452	n:3970000
Cons ci ratio: 4.862121e-01	ci left: 1.241508e-05	ci right 2.058599e-05	k: 64	n:3970000
KS ci ratio: 1.337030e-02	ci left: 2.105149e-02	ci right 2.133510e-02	k: 84136	n:3970000
ZNF782   3970000 perm   6751 sec   (588 perm/sec)   p_kst 2.119295e-02   p_cons 1.612091e-05   p_joint 3.657431e-04

Joint ci ratio: 1.026778e-01	ci left: 3.472806e-04	ci right 3.851108e-04	k: 1456	n:3980000
Cons ci ratio: 4.825146e-01	ci left: 1.260445e-05	ci right 2.081599e-05	k: 65	n:3980000
KS ci ratio: 1.335267e-02	ci left: 2.105419e-02	ci right 2.133746e-02	k: 84358	n:3980000
ZNF782   3980000 perm   6783 sec   (587 perm/sec)   p_kst 2.119548e-02   p_cons 1.633166e-05   p_joint 3.658291e-04

Joint ci ratio: 1.025372e-01	ci left: 3.473870e-04	ci right 3.851738e-04	k: 1460	n:3990000
Cons ci ratio: 4.825146e-01	ci left: 1.257286e-05	ci right 2.076382e-05	k: 65	n:3990000
KS ci ratio: 1.333528e-02	ci left: 2.105638e-02	ci right 2.133930e-02	k: 84578	n:3990000
ZNF782   3990000 perm   6816 sec   (585 perm/sec)   p_kst 2.119749e-02   p_cons 1.629073e-05   p_joint 3.659148e-04

Joint ci ratio: 1.024321e-01	ci left: 3.472493e-04	ci right 3.849801e-04	k: 1463	n:4000000
Cons ci ratio: 4.789002e-01	ci left: 1.276112e-05	ci right 2.099200e-05	k: 66	n:4000000
KS ci ratio: 1.331997e-02	ci left: 2.105233e-02	ci right 2.133487e-02	k: 84773	n:4000000
ZNF782   4000000 perm   6848 sec   (584 perm/sec)   p_kst 2.119325e-02   p_cons 1.650000e-05   p_joint 3.657500e-04

Joint ci ratio: 1.022576e-01	ci left: 3.475983e-04	ci right 3.852988e-04	k: 1468	n:4010000
Cons ci ratio: 4.789002e-01	ci left: 1.272930e-05	ci right 2.093965e-05	k: 66	n:4010000
KS ci ratio: 1.330158e-02	ci left: 2.105799e-02	ci right 2.134021e-02	k: 85007	n:4010000
ZNF782   4010000 perm   6880 sec   (583 perm/sec)   p_kst 2.119875e-02   p_cons 1.645885e-05   p_joint 3.660848e-04

Joint ci ratio: 1.020840e-01	ci left: 3.479457e-04	ci right 3.856159e-04	k: 1473	n:4020000
Cons ci ratio: 4.789002e-01	ci left: 1.269763e-05	ci right 2.088756e-05	k: 66	n:4020000
KS ci ratio: 1.328558e-02	ci left: 2.105643e-02	ci right 2.133829e-02	k: 85212	n:4020000
ZNF782   4020000 perm   6912 sec   (582 perm/sec)   p_kst 2.119701e-02   p_cons 1.641791e-05   p_joint 3.664179e-04

Joint ci ratio: 1.020840e-01	ci left: 3.470823e-04	ci right 3.846591e-04	k: 1473	n:4030000
Cons ci ratio: 4.789002e-01	ci left: 1.266612e-05	ci right 2.083573e-05	k: 66	n:4030000
KS ci ratio: 1.326822e-02	ci left: 2.105933e-02	ci right 2.134086e-02	k: 85435	n:4030000
ZNF782   4030000 perm   6945 sec   (580 perm/sec)   p_kst 2.119975e-02   p_cons 1.637717e-05   p_joint 3.655087e-04

Joint ci ratio: 1.019803e-01	ci left: 3.469468e-04	ci right 3.844685e-04	k: 1476	n:4040000
Cons ci ratio: 4.789002e-01	ci left: 1.263477e-05	ci right 2.078416e-05	k: 66	n:4040000
KS ci ratio: 1.325171e-02	ci left: 2.105975e-02	ci right 2.134093e-02	k: 85648	n:4040000
ZNF782   4040000 perm   6977 sec   (579 perm/sec)   p_kst 2.120000e-02   p_cons 1.633663e-05   p_joint 3.653465e-04

Joint ci ratio: 1.018081e-01	ci left: 3.472932e-04	ci right 3.847852e-04	k: 1481	n:4050000
Cons ci ratio: 4.753658e-01	ci left: 1.282078e-05	ci right 2.100924e-05	k: 67	n:4050000
KS ci ratio: 1.323778e-02	ci left: 2.105230e-02	ci right 2.133308e-02	k: 85829	n:4050000
ZNF782   4050000 perm   7009 sec   (578 perm/sec)   p_kst 2.119235e-02   p_cons 1.654321e-05   p_joint 3.656790e-04

Joint ci ratio: 1.017052e-01	ci left: 3.471579e-04	ci right 3.845952e-04	k: 1484	n:4060000
Cons ci ratio: 4.753658e-01	ci left: 1.278920e-05	ci right 2.095750e-05	k: 67	n:4060000
KS ci ratio: 1.322067e-02	ci left: 2.105494e-02	ci right 2.133540e-02	k: 86051	n:4060000
ZNF782   4060000 perm   7042 sec   (577 perm/sec)   p_kst 2.119483e-02   p_cons 1.650246e-05   p_joint 3.655172e-04

Joint ci ratio: 1.015344e-01	ci left: 3.475022e-04	ci right 3.849099e-04	k: 1489	n:4070000
Cons ci ratio: 4.719085e-01	ci left: 1.297414e-05	ci right 2.118084e-05	k: 68	n:4070000
KS ci ratio: 1.320684e-02	ci left: 2.104753e-02	ci right 2.132759e-02	k: 86232	n:4070000
ZNF782   4070000 perm   7075 sec   (575 perm/sec)   p_kst 2.118722e-02   p_cons 1.670762e-05   p_joint 3.658477e-04

Joint ci ratio: 1.013306e-01	ci left: 3.480838e-04	ci right 3.854744e-04	k: 1495	n:4080000
Cons ci ratio: 4.719085e-01	ci left: 1.294234e-05	ci right 2.112892e-05	k: 68	n:4080000
KS ci ratio: 1.319126e-02	ci left: 2.104578e-02	ci right 2.132549e-02	k: 86436	n:4080000
ZNF782   4080000 perm   7108 sec   (574 perm/sec)   p_kst 2.118529e-02   p_cons 1.666667e-05   p_joint 3.664216e-04

Joint ci ratio: 1.012292e-01	ci left: 3.479477e-04	ci right 3.852840e-04	k: 1498	n:4090000
Cons ci ratio: 4.719085e-01	ci left: 1.291070e-05	ci right 2.107726e-05	k: 68	n:4090000
KS ci ratio: 1.317434e-02	ci left: 2.104843e-02	ci right 2.132780e-02	k: 86658	n:4090000
ZNF782   4090000 perm   7141 sec   (573 perm/sec)   p_kst 2.118778e-02   p_cons 1.662592e-05   p_joint 3.662592e-04

Joint ci ratio: 1.011954e-01	ci left: 3.473367e-04	ci right 3.845943e-04	k: 1499	n:4100000
Cons ci ratio: 4.719085e-01	ci left: 1.287921e-05	ci right 2.102586e-05	k: 68	n:4100000
KS ci ratio: 1.315864e-02	ci left: 2.104741e-02	ci right 2.132644e-02	k: 86865	n:4100000
ZNF782   4100000 perm   7174 sec   (571 perm/sec)   p_kst 2.118659e-02   p_cons 1.658537e-05   p_joint 3.656098e-04

Joint ci ratio: 1.010272e-01	ci left: 3.476774e-04	ci right 3.849059e-04	k: 1504	n:4110000
Cons ci ratio: 4.685256e-01	ci left: 1.306234e-05	ci right 2.124665e-05	k: 69	n:4110000
KS ci ratio: 1.314192e-02	ci left: 2.104979e-02	ci right 2.132850e-02	k: 87086	n:4110000
ZNF782   4110000 perm   7207 sec   (570 perm/sec)   p_kst 2.118881e-02   p_cons 1.678832e-05   p_joint 3.659367e-04

Joint ci ratio: 1.009937e-01	ci left: 3.470701e-04	ci right 3.842205e-04	k: 1505	n:4120000
Cons ci ratio: 4.685256e-01	ci left: 1.303063e-05	ci right 2.119508e-05	k: 69	n:4120000
KS ci ratio: 1.312618e-02	ci left: 2.104926e-02	ci right 2.132762e-02	k: 87295	n:4120000
ZNF782   4120000 perm   7241 sec   (569 perm/sec)   p_kst 2.118811e-02   p_cons 1.674757e-05   p_joint 3.652913e-04

Joint ci ratio: 1.008264e-01	ci left: 3.474099e-04	ci right 3.845314e-04	k: 1510	n:4130000
Cons ci ratio: 4.685256e-01	ci left: 1.299908e-05	ci right 2.114376e-05	k: 69	n:4130000
KS ci ratio: 1.311165e-02	ci left: 2.104512e-02	ci right 2.132311e-02	k: 87489	n:4130000
ZNF782   4130000 perm   7274 sec   (568 perm/sec)   p_kst 2.118378e-02   p_cons 1.670702e-05   p_joint 3.656174e-04

Joint ci ratio: 1.007598e-01	ci left: 3.470416e-04	ci right 3.840978e-04	k: 1512	n:4140000
Cons ci ratio: 4.685256e-01	ci left: 1.296768e-05	ci right 2.109269e-05	k: 69	n:4140000
KS ci ratio: 1.309518e-02	ci left: 2.104725e-02	ci right 2.132492e-02	k: 87709	n:4140000
ZNF782   4140000 perm   7307 sec   (567 perm/sec)   p_kst 2.118575e-02   p_cons 1.666667e-05   p_joint 3.652174e-04

Joint ci ratio: 1.006268e-01	ci left: 3.471450e-04	ci right 3.841604e-04	k: 1516	n:4150000
Cons ci ratio: 4.685256e-01	ci left: 1.293644e-05	ci right 2.104186e-05	k: 69	n:4150000
KS ci ratio: 1.307916e-02	ci left: 2.104817e-02	ci right 2.132551e-02	k: 87924	n:4150000
ZNF782   4150000 perm   7341 sec   (565 perm/sec)   p_kst 2.118651e-02   p_cons 1.662651e-05   p_joint 3.653012e-04

Joint ci ratio: 1.005937e-01	ci left: 3.465448e-04	ci right 3.834834e-04	k: 1517	n:4160000
Cons ci ratio: 4.685256e-01	ci left: 1.290534e-05	ci right 2.099128e-05	k: 69	n:4160000
KS ci ratio: 1.306463e-02	ci left: 2.104454e-02	ci right 2.132152e-02	k: 88120	n:4160000
ZNF782   4160000 perm   7375 sec   (564 perm/sec)   p_kst 2.118269e-02   p_cons 1.658654e-05   p_joint 3.646635e-04

Joint ci ratio: 1.005275e-01	ci left: 3.461813e-04	ci right 3.830554e-04	k: 1519	n:4170000
Cons ci ratio: 4.685256e-01	ci left: 1.287439e-05	ci right 2.094094e-05	k: 69	n:4170000
KS ci ratio: 1.305007e-02	ci left: 2.104116e-02	ci right 2.131778e-02	k: 88317	n:4170000
ZNF782   4170000 perm   7409 sec   (563 perm/sec)   p_kst 2.117914e-02   p_cons 1.654676e-05   p_joint 3.642686e-04

Joint ci ratio: 1.004285e-01	ci left: 3.460528e-04	ci right 3.828748e-04	k: 1522	n:4180000
Cons ci ratio: 4.685256e-01	ci left: 1.284359e-05	ci right 2.089084e-05	k: 69	n:4180000
KS ci ratio: 1.303489e-02	ci left: 2.103994e-02	ci right 2.131623e-02	k: 88523	n:4180000
ZNF782   4180000 perm   7443 sec   (562 perm/sec)   p_kst 2.117775e-02   p_cons 1.650718e-05   p_joint 3.641148e-04

Joint ci ratio: 1.003297e-01	ci left: 3.459249e-04	ci right 3.826949e-04	k: 1525	n:4190000
Cons ci ratio: 4.685256e-01	ci left: 1.281294e-05	ci right 2.084098e-05	k: 69	n:4190000
KS ci ratio: 1.301878e-02	ci left: 2.104182e-02	ci right 2.131779e-02	k: 88742	n:4190000
ZNF782   4190000 perm   7476 sec   (560 perm/sec)   p_kst 2.117947e-02   p_cons 1.646778e-05   p_joint 3.639618e-04

Joint ci ratio: 1.002313e-01	ci left: 3.457976e-04	ci right 3.825160e-04	k: 1528	n:4200000
Cons ci ratio: 4.685257e-01	ci left: 1.278243e-05	ci right 2.079136e-05	k: 69	n:4200000
KS ci ratio: 1.300438e-02	ci left: 2.103848e-02	ci right 2.131409e-02	k: 88939	n:4200000
ZNF782   4200000 perm   7511 sec   (559 perm/sec)   p_kst 2.117595e-02   p_cons 1.642857e-05   p_joint 3.638095e-04

Joint ci ratio: 1.000678e-01	ci left: 3.461342e-04	ci right 3.828248e-04	k: 1533	n:4210000
Cons ci ratio: 4.685257e-01	ci left: 1.275207e-05	ci right 2.074198e-05	k: 69	n:4210000
KS ci ratio: 1.298832e-02	ci left: 2.104059e-02	ci right 2.131589e-02	k: 89159	n:4210000
ZNF782   4210000 perm   7545 sec   (558 perm/sec)   p_kst 2.117791e-02   p_cons 1.638955e-05   p_joint 3.641330e-04

Joint ci ratio: 9.987261e-02	ci left: 3.467002e-04	ci right 3.833749e-04	k: 1539	n:4220000
Cons ci ratio: 4.685257e-01	ci left: 1.272185e-05	ci right 2.069283e-05	k: 69	n:4220000
KS ci ratio: 1.297312e-02	ci left: 2.104010e-02	ci right 2.131506e-02	k: 89368	n:4220000
ZNF782   4220000 perm   7579 sec   (557 perm/sec)   p_kst 2.117725e-02   p_cons 1.635071e-05   p_joint 3.646919e-04

Joint ci ratio: 9.984023e-02	ci left: 3.461111e-04	ci right 3.827109e-04	k: 1540	n:4230000
Cons ci ratio: 4.685257e-01	ci left: 1.269178e-05	ci right 2.064391e-05	k: 69	n:4230000
KS ci ratio: 1.295754e-02	ci left: 2.104102e-02	ci right 2.131567e-02	k: 89583	n:4230000
ZNF782   4230000 perm   7613 sec   (556 perm/sec)   p_kst 2.117801e-02   p_cons 1.631206e-05   p_joint 3.640662e-04

Joint ci ratio: 9.974320e-02	ci left: 3.459847e-04	ci right 3.825335e-04	k: 1543	n:4240000
Cons ci ratio: 4.685257e-01	ci left: 1.266184e-05	ci right 2.059522e-05	k: 69	n:4240000
KS ci ratio: 1.294268e-02	ci left: 2.103982e-02	ci right 2.131414e-02	k: 89789	n:4240000
ZNF782   4240000 perm   7648 sec   (554 perm/sec)   p_kst 2.117665e-02   p_cons 1.627358e-05   p_joint 3.639151e-04

Joint ci ratio: 9.961424e-02	ci left: 3.460883e-04	ci right 3.825980e-04	k: 1547	n:4250000
Cons ci ratio: 4.685257e-01	ci left: 1.263205e-05	ci right 2.054676e-05	k: 69	n:4250000
KS ci ratio: 1.292853e-02	ci left: 2.103652e-02	ci right 2.131049e-02	k: 89986	n:4250000
ZNF782   4250000 perm   7683 sec   (553 perm/sec)   p_kst 2.117318e-02   p_cons 1.623529e-05   p_joint 3.640000e-04

Joint ci ratio: 9.954997e-02	ci left: 3.457337e-04	ci right 3.821811e-04	k: 1549	n:4260000
Cons ci ratio: 4.685257e-01	ci left: 1.260240e-05	ci right 2.049853e-05	k: 69	n:4260000
KS ci ratio: 1.291486e-02	ci left: 2.103183e-02	ci right 2.130544e-02	k: 90177	n:4260000
ZNF782   4260000 perm   7717 sec   (552 perm/sec)   p_kst 2.116831e-02   p_cons 1.619718e-05   p_joint 3.636150e-04

Joint ci ratio: 9.938978e-02	ci left: 3.460658e-04	ci right 3.824861e-04	k: 1554	n:4270000
Cons ci ratio: 4.685257e-01	ci left: 1.257288e-05	ci right 2.045052e-05	k: 69	n:4270000
KS ci ratio: 1.290021e-02	ci left: 2.103043e-02	ci right 2.130371e-02	k: 90382	n:4270000
ZNF782   4270000 perm   7752 sec   (551 perm/sec)   p_kst 2.116674e-02   p_cons 1.615925e-05   p_joint 3.639344e-04

Joint ci ratio: 1.267014e-01	ci left: 2.094295e-04	ci right 2.379828e-04	k: 956	n:4280000
Cons ci ratio: 4.685257e-01	ci left: 1.254351e-05	ci right 2.040274e-05	k: 69	n:4280000
KS ci ratio: 1.288475e-02	ci left: 2.103183e-02	ci right 2.130480e-02	k: 90599	n:4280000
ZNF782   4280000 perm   7787 sec   (550 perm/sec)   p_kst 2.116799e-02   p_cons 1.612150e-05   p_joint 2.233645e-04

Joint ci ratio: 1.265033e-01	ci left: 2.096185e-04	ci right 2.381495e-04	k: 959	n:4290000
Cons ci ratio: 4.685257e-01	ci left: 1.251427e-05	ci right 2.035518e-05	k: 69	n:4290000
KS ci ratio: 1.286955e-02	ci left: 2.103253e-02	ci right 2.130518e-02	k: 90813	n:4290000
ZNF782   4290000 perm   7822 sec   (548 perm/sec)   p_kst 2.116853e-02   p_cons 1.608392e-05   p_joint 2.235431e-04

Joint ci ratio: 1.262405e-01	ci left: 2.100318e-04	ci right 2.385553e-04	k: 963	n:4300000
Cons ci ratio: 4.685257e-01	ci left: 1.248516e-05	ci right 2.030784e-05	k: 69	n:4300000
KS ci ratio: 1.285326e-02	ci left: 2.103693e-02	ci right 2.130930e-02	k: 91043	n:4300000
ZNF782   4300000 perm   7857 sec   (547 perm/sec)   p_kst 2.117279e-02   p_cons 1.604651e-05   p_joint 2.239535e-04

Joint ci ratio: 1.260445e-01	ci left: 2.102186e-04	ci right 2.387198e-04	k: 966	n:4310000
Cons ci ratio: 4.619725e-01	ci left: 1.286582e-05	ci right 2.077880e-05	k: 71	n:4310000
KS ci ratio: 1.283947e-02	ci left: 2.103345e-02	ci right 2.130548e-02	k: 91239	n:4310000
ZNF782   4310000 perm   7892 sec   (546 perm/sec)   p_kst 2.116914e-02   p_cons 1.647332e-05   p_joint 2.241299e-04

Joint ci ratio: 1.258495e-01	ci left: 2.104045e-04	ci right 2.388835e-04	k: 969	n:4320000
Cons ci ratio: 4.587974e-01	ci left: 1.304066e-05	ci right 2.098886e-05	k: 72	n:4320000
KS ci ratio: 1.282386e-02	ci left: 2.103598e-02	ci right 2.130771e-02	k: 91461	n:4320000
ZNF782   4320000 perm   7927 sec   (545 perm/sec)   p_kst 2.117153e-02   p_cons 1.666667e-05   p_joint 2.243056e-04

Joint ci ratio: 9.853793e-02	ci left: 3.473517e-04	ci right 3.835759e-04	k: 1581	n:4330000
Cons ci ratio: 4.556868e-01	ci left: 1.321488e-05	ci right 2.119777e-05	k: 73	n:4330000
KS ci ratio: 1.281038e-02	ci left: 2.103183e-02	ci right 2.130322e-02	k: 91654	n:4330000
ZNF782   4330000 perm   7963 sec   (544 perm/sec)   p_kst 2.116721e-02   p_cons 1.685912e-05   p_joint 3.651270e-04

Joint ci ratio: 9.850683e-02	ci left: 3.467761e-04	ci right 3.829282e-04	k: 1582	n:4340000
Cons ci ratio: 4.556868e-01	ci left: 1.318443e-05	ci right 2.114893e-05	k: 73	n:4340000
KS ci ratio: 1.279481e-02	ci left: 2.103459e-02	ci right 2.130568e-02	k: 91877	n:4340000
ZNF782   4340000 perm   7999 sec   (543 perm/sec)   p_kst 2.116982e-02   p_cons 1.682028e-05   p_joint 3.645161e-04

Joint ci ratio: 9.825881e-02	ci left: 3.477728e-04	ci right 3.839322e-04	k: 1590	n:4350000
Cons ci ratio: 4.556868e-01	ci left: 1.315413e-05	ci right 2.110031e-05	k: 73	n:4350000
KS ci ratio: 1.278043e-02	ci left: 2.103367e-02	ci right 2.130444e-02	k: 92084	n:4350000
ZNF782   4350000 perm   8035 sec   (541 perm/sec)   p_kst 2.116874e-02   p_cons 1.678161e-05   p_joint 3.655172e-04

Joint ci ratio: 9.807403e-02	ci left: 3.483175e-04	ci right 3.844616e-04	k: 1596	n:4360000
Cons ci ratio: 4.556868e-01	ci left: 1.312396e-05	ci right 2.105191e-05	k: 73	n:4360000
KS ci ratio: 1.276447e-02	ci left: 2.103801e-02	ci right 2.130850e-02	k: 92314	n:4360000
ZNF782   4360000 perm   8070 sec   (540 perm/sec)   p_kst 2.117294e-02   p_cons 1.674312e-05   p_joint 3.660550e-04

Joint ci ratio: 9.795143e-02	ci left: 3.484133e-04	ci right 3.845195e-04	k: 1600	n:4370000
Cons ci ratio: 4.556868e-01	ci left: 1.309392e-05	ci right 2.100374e-05	k: 73	n:4370000
KS ci ratio: 1.274857e-02	ci left: 2.104233e-02	ci right 2.131254e-02	k: 92544	n:4370000
ZNF782   4370000 perm   8106 sec   (539 perm/sec)   p_kst 2.117712e-02   p_cons 1.670481e-05   p_joint 3.661327e-04

Joint ci ratio: 1.248242e-01	ci left: 2.110607e-04	ci right 2.393786e-04	k: 985	n:4380000
Cons ci ratio: 4.556868e-01	ci left: 1.306403e-05	ci right 2.095579e-05	k: 73	n:4380000
KS ci ratio: 1.273547e-02	ci left: 2.103776e-02	ci right 2.130762e-02	k: 92735	n:4380000
ZNF782   4380000 perm   8141 sec   (538 perm/sec)   p_kst 2.117237e-02   p_cons 1.666667e-05   p_joint 2.248858e-04

Joint ci ratio: 1.245717e-01	ci left: 2.114627e-04	ci right 2.397729e-04	k: 989	n:4390000
Cons ci ratio: 4.556869e-01	ci left: 1.303427e-05	ci right 2.090805e-05	k: 73	n:4390000
KS ci ratio: 1.272087e-02	ci left: 2.103820e-02	ci right 2.130776e-02	k: 92948	n:4390000
ZNF782   4390000 perm   8177 sec   (537 perm/sec)   p_kst 2.117267e-02   p_cons 1.662870e-05   p_joint 2.252847e-04

Joint ci ratio: 1.244461e-01	ci left: 2.114225e-04	ci right 2.396966e-04	k: 991	n:4400000
Cons ci ratio: 4.556869e-01	ci left: 1.300465e-05	ci right 2.086053e-05	k: 73	n:4400000
KS ci ratio: 1.270610e-02	ci left: 2.103932e-02	ci right 2.130858e-02	k: 93164	n:4400000
ZNF782   4400000 perm   8212 sec   (536 perm/sec)   p_kst 2.117364e-02   p_cons 1.659091e-05   p_joint 2.252273e-04

Joint ci ratio: 1.242583e-01	ci left: 2.116022e-04	ci right 2.398545e-04	k: 994	n:4410000
Cons ci ratio: 4.556869e-01	ci left: 1.297516e-05	ci right 2.081323e-05	k: 73	n:4410000
KS ci ratio: 1.269244e-02	ci left: 2.103705e-02	ci right 2.130599e-02	k: 93365	n:4410000
ZNF782   4410000 perm   8248 sec   (535 perm/sec)   p_kst 2.117120e-02   p_cons 1.655329e-05   p_joint 2.253968e-04

Joint ci ratio: 1.240714e-01	ci left: 2.117811e-04	ci right 2.400116e-04	k: 997	n:4420000
Cons ci ratio: 4.556869e-01	ci left: 1.294580e-05	ci right 2.076614e-05	k: 73	n:4420000
KS ci ratio: 1.267888e-02	ci left: 2.103456e-02	ci right 2.130317e-02	k: 93565	n:4420000
ZNF782   4420000 perm   8284 sec   (534 perm/sec)   p_kst 2.116855e-02   p_cons 1.651584e-05   p_joint 2.255656e-04

Joint ci ratio: 1.240714e-01	ci left: 2.113030e-04	ci right 2.394699e-04	k: 997	n:4430000
Cons ci ratio: 4.556869e-01	ci left: 1.291658e-05	ci right 2.071927e-05	k: 73	n:4430000
KS ci ratio: 1.266482e-02	ci left: 2.103388e-02	ci right 2.130219e-02	k: 93773	n:4430000
ZNF782   4430000 perm   8320 sec   (532 perm/sec)   p_kst 2.116772e-02   p_cons 1.647856e-05   p_joint 2.250564e-04

Joint ci ratio: 1.239473e-01	ci left: 2.112636e-04	ci right 2.393949e-04	k: 999	n:4440000
Cons ci ratio: 4.556869e-01	ci left: 1.288749e-05	ci right 2.067260e-05	k: 73	n:4440000
KS ci ratio: 1.264894e-02	ci left: 2.103927e-02	ci right 2.130730e-02	k: 94008	n:4440000
ZNF782   4440000 perm   8356 sec   (531 perm/sec)   p_kst 2.117297e-02   p_cons 1.644144e-05   p_joint 2.250000e-04

Joint ci ratio: 1.237618e-01	ci left: 2.114421e-04	ci right 2.395520e-04	k: 1002	n:4450000
Cons ci ratio: 4.556869e-01	ci left: 1.285853e-05	ci right 2.062615e-05	k: 73	n:4450000
KS ci ratio: 1.263443e-02	ci left: 2.104037e-02	ci right 2.130812e-02	k: 94224	n:4450000
ZNF782   4450000 perm   8392 sec   (530 perm/sec)   p_kst 2.117393e-02   p_cons 1.640449e-05   p_joint 2.251685e-04

Joint ci ratio: 1.235157e-01	ci left: 2.118372e-04	ci right 2.399395e-04	k: 1006	n:4460000
Cons ci ratio: 4.556869e-01	ci left: 1.282970e-05	ci right 2.057990e-05	k: 73	n:4460000
KS ci ratio: 1.261969e-02	ci left: 2.104237e-02	ci right 2.130982e-02	k: 94444	n:4460000
ZNF782   4460000 perm   8429 sec   (529 perm/sec)   p_kst 2.117578e-02   p_cons 1.636771e-05   p_joint 2.255605e-04

Joint ci ratio: 1.232711e-01	ci left: 2.122305e-04	ci right 2.403251e-04	k: 1010	n:4470000
Cons ci ratio: 4.556869e-01	ci left: 1.280099e-05	ci right 2.053386e-05	k: 73	n:4470000
KS ci ratio: 1.260460e-02	ci left: 2.104569e-02	ci right 2.131287e-02	k: 94670	n:4470000
ZNF782   4470000 perm   8465 sec   (528 perm/sec)   p_kst 2.117897e-02   p_cons 1.633110e-05   p_joint 2.259508e-04

Joint ci ratio: 1.230886e-01	ci left: 2.124058e-04	ci right 2.404790e-04	k: 1013	n:4480000
Cons ci ratio: 4.556869e-01	ci left: 1.277242e-05	ci right 2.048802e-05	k: 73	n:4480000
KS ci ratio: 1.258990e-02	ci left: 2.104789e-02	ci right 2.131478e-02	k: 94891	n:4480000
ZNF782   4480000 perm   8502 sec   (527 perm/sec)   p_kst 2.118103e-02   p_cons 1.629464e-05   p_joint 2.261161e-04

Joint ci ratio: 1.230280e-01	ci left: 2.121486e-04	ci right 2.401730e-04	k: 1014	n:4490000
Cons ci ratio: 4.556869e-01	ci left: 1.274397e-05	ci right 2.044239e-05	k: 73	n:4490000
KS ci ratio: 1.257404e-02	ci left: 2.105408e-02	ci right 2.132070e-02	k: 95130	n:4490000
ZNF782   4490000 perm   8539 sec   (526 perm/sec)   p_kst 2.118708e-02   p_cons 1.625835e-05   p_joint 2.258352e-04

Joint ci ratio: 1.227863e-01	ci left: 2.125387e-04	ci right 2.405554e-04	k: 1018	n:4500000
Cons ci ratio: 4.556869e-01	ci left: 1.271565e-05	ci right 2.039697e-05	k: 73	n:4500000
KS ci ratio: 1.255951e-02	ci left: 2.105603e-02	ci right 2.132237e-02	k: 95350	n:4500000
ZNF782   4500000 perm   8575 sec   (525 perm/sec)   p_kst 2.118889e-02   p_cons 1.622222e-05   p_joint 2.262222e-04

Joint ci ratio: 1.226659e-01	ci left: 2.124973e-04	ci right 2.404791e-04	k: 1020	n:4510000
Cons ci ratio: 4.556870e-01	ci left: 1.268746e-05	ci right 2.035174e-05	k: 73	n:4510000
KS ci ratio: 1.254658e-02	ci left: 2.105288e-02	ci right 2.131891e-02	k: 95547	n:4510000
ZNF782   4510000 perm   8612 sec   (524 perm/sec)   p_kst 2.118559e-02   p_cons 1.618625e-05   p_joint 2.261641e-04

Joint ci ratio: 1.225460e-01	ci left: 2.124560e-04	ci right 2.404031e-04	k: 1022	n:4520000
Cons ci ratio: 4.556870e-01	ci left: 1.265939e-05	ci right 2.030671e-05	k: 73	n:4520000
KS ci ratio: 1.253181e-02	ci left: 2.105593e-02	ci right 2.132168e-02	k: 95772	n:4520000
ZNF782   4520000 perm   8649 sec   (523 perm/sec)   p_kst 2.118850e-02   p_cons 1.615044e-05   p_joint 2.261062e-04

Joint ci ratio: 1.223667e-01	ci left: 2.126290e-04	ci right 2.405550e-04	k: 1025	n:4530000
Cons ci ratio: 4.556870e-01	ci left: 1.263144e-05	ci right 2.026189e-05	k: 73	n:4530000
KS ci ratio: 1.251683e-02	ci left: 2.105984e-02	ci right 2.132532e-02	k: 96001	n:4530000
ZNF782   4530000 perm   8685 sec   (522 perm/sec)   p_kst 2.119227e-02   p_cons 1.611479e-05   p_joint 2.262693e-04

Joint ci ratio: 1.220104e-01	ci left: 2.134419e-04	ci right 2.413871e-04	k: 1031	n:4540000
Cons ci ratio: 4.556870e-01	ci left: 1.260362e-05	ci right 2.021726e-05	k: 73	n:4540000
KS ci ratio: 1.250244e-02	ci left: 2.106198e-02	ci right 2.132718e-02	k: 96222	n:4540000
ZNF782   4540000 perm   8722 sec   (521 perm/sec)   p_kst 2.119427e-02   p_cons 1.607930e-05   p_joint 2.270925e-04

Joint ci ratio: 1.218334e-01	ci left: 2.136120e-04	ci right 2.415360e-04	k: 1034	n:4550000
Cons ci ratio: 4.556870e-01	ci left: 1.257592e-05	ci right 2.017282e-05	k: 73	n:4550000
KS ci ratio: 1.248876e-02	ci left: 2.106192e-02	ci right 2.132682e-02	k: 96433	n:4550000
ZNF782   4550000 perm   8759 sec   (519 perm/sec)   p_kst 2.119407e-02   p_cons 1.604396e-05   p_joint 2.272527e-04

Joint ci ratio: 1.217159e-01	ci left: 2.135688e-04	ci right 2.414582e-04	k: 1036	n:4560000
Cons ci ratio: 4.526388e-01	ci left: 1.274255e-05	ci right 2.037281e-05	k: 74	n:4560000
KS ci ratio: 1.247558e-02	ci left: 2.106033e-02	ci right 2.132493e-02	k: 96637	n:4560000
ZNF782   4560000 perm   8799 sec   (518 perm/sec)   p_kst 2.119232e-02   p_cons 1.622807e-05   p_joint 2.271930e-04

Joint ci ratio: 1.215987e-01	ci left: 2.135258e-04	ci right 2.413808e-04	k: 1038	n:4570000
Cons ci ratio: 4.496511e-01	ci left: 1.290861e-05	ci right 2.057176e-05	k: 75	n:4570000
KS ci ratio: 1.246205e-02	ci left: 2.106005e-02	ci right 2.132436e-02	k: 96847	n:4570000
ZNF782   4570000 perm   8836 sec   (517 perm/sec)   p_kst 2.119190e-02   p_cons 1.641138e-05   p_joint 2.271335e-04

Joint ci ratio: 1.214818e-01	ci left: 2.134830e-04	ci right 2.413038e-04	k: 1040	n:4580000
Cons ci ratio: 4.467217e-01	ci left: 1.307412e-05	ci right 2.076968e-05	k: 76	n:4580000
KS ci ratio: 1.244863e-02	ci left: 2.105956e-02	ci right 2.132358e-02	k: 97056	n:4580000
ZNF782   4580000 perm   8873 sec   (516 perm/sec)   p_kst 2.119127e-02   p_cons 1.659389e-05   p_joint 2.270742e-04

Joint ci ratio: 1.213653e-01	ci left: 2.134404e-04	ci right 2.412270e-04	k: 1042	n:4590000
Cons ci ratio: 4.467217e-01	ci left: 1.304563e-05	ci right 2.072443e-05	k: 76	n:4590000
KS ci ratio: 1.243414e-02	ci left: 2.106276e-02	ci right 2.132651e-02	k: 97282	n:4590000
ZNF782   4590000 perm   8911 sec   (515 perm/sec)   p_kst 2.119434e-02   p_cons 1.655773e-05   p_joint 2.270153e-04

Joint ci ratio: 1.211911e-01	ci left: 2.136088e-04	ci right 2.413745e-04	k: 1045	n:4600000
Cons ci ratio: 4.467217e-01	ci left: 1.301727e-05	ci right 2.067938e-05	k: 76	n:4600000
KS ci ratio: 1.242003e-02	ci left: 2.106487e-02	ci right 2.132834e-02	k: 97503	n:4600000
ZNF782   4600000 perm   8948 sec   (514 perm/sec)   p_kst 2.119630e-02   p_cons 1.652174e-05   p_joint 2.271739e-04

Joint ci ratio: 1.210754e-01	ci left: 2.135661e-04	ci right 2.412979e-04	k: 1047	n:4610000
Cons ci ratio: 4.467217e-01	ci left: 1.298904e-05	ci right 2.063452e-05	k: 76	n:4610000
KS ci ratio: 1.240733e-02	ci left: 2.106242e-02	ci right 2.132560e-02	k: 97703	n:4610000
ZNF782   4610000 perm   8986 sec   (513 perm/sec)   p_kst 2.119371e-02   p_cons 1.648590e-05   p_joint 2.271150e-04

Joint ci ratio: 1.208450e-01	ci left: 2.139434e-04	ci right 2.416676e-04	k: 1051	n:4620000
Cons ci ratio: 4.467217e-01	ci left: 1.296092e-05	ci right 2.058986e-05	k: 76	n:4620000
KS ci ratio: 1.239479e-02	ci left: 2.105956e-02	ci right 2.132243e-02	k: 97901	n:4620000
ZNF782   4620000 perm   9025 sec   (512 perm/sec)   p_kst 2.119069e-02   p_cons 1.645022e-05   p_joint 2.274892e-04

Joint ci ratio: 1.206731e-01	ci left: 2.141097e-04	ci right 2.418132e-04	k: 1054	n:4630000
Cons ci ratio: 4.467217e-01	ci left: 1.293293e-05	ci right 2.054539e-05	k: 76	n:4630000
KS ci ratio: 1.237965e-02	ci left: 2.106553e-02	ci right 2.132815e-02	k: 98140	n:4630000
ZNF782   4630000 perm   9066 sec   (511 perm/sec)   p_kst 2.119654e-02   p_cons 1.641469e-05   p_joint 2.276458e-04

Joint ci ratio: 9.458462e-02	ci left: 3.525376e-04	ci right 3.877460e-04	k: 1716	n:4640000
Cons ci ratio: 4.438488e-01	ci left: 1.309640e-05	ci right 2.074064e-05	k: 77	n:4640000
KS ci ratio: 1.236579e-02	ci left: 2.106740e-02	ci right 2.132975e-02	k: 98360	n:4640000
ZNF782   4640000 perm   9103 sec   (510 perm/sec)   p_kst 2.119828e-02   p_cons 1.659483e-05   p_joint 3.698276e-04

Joint ci ratio: 9.450210e-02	ci left: 3.524094e-04	ci right 3.875725e-04	k: 1719	n:4650000
Cons ci ratio: 4.438488e-01	ci left: 1.306824e-05	ci right 2.069604e-05	k: 77	n:4650000
KS ci ratio: 1.235249e-02	ci left: 2.106755e-02	ci right 2.132961e-02	k: 98572	n:4650000
ZNF782   4650000 perm   9141 sec   (509 perm/sec)   p_kst 2.119828e-02   p_cons 1.655914e-05   p_joint 3.696774e-04

Joint ci ratio: 9.436503e-02	ci left: 3.527007e-04	ci right 3.878391e-04	k: 1724	n:4660000
Cons ci ratio: 4.438488e-01	ci left: 1.304019e-05	ci right 2.065163e-05	k: 77	n:4660000
KS ci ratio: 1.233903e-02	ci left: 2.106833e-02	ci right 2.133012e-02	k: 98787	n:4660000
ZNF782   4660000 perm   9179 sec   (508 perm/sec)   p_kst 2.119893e-02   p_cons 1.652361e-05   p_joint 3.699571e-04

Joint ci ratio: 9.417411e-02	ci left: 3.534091e-04	ci right 3.885429e-04	k: 1731	n:4670000
Cons ci ratio: 4.382655e-01	ci left: 1.339297e-05	ci right 2.108295e-05	k: 79	n:4670000
KS ci ratio: 1.232581e-02	ci left: 2.106847e-02	ci right 2.132998e-02	k: 98999	n:4670000
ZNF782   4670000 perm   9217 sec   (507 perm/sec)   p_kst 2.119893e-02   p_cons 1.691649e-05   p_joint 3.706638e-04

Joint ci ratio: 9.406555e-02	ci left: 3.534885e-04	ci right 3.885875e-04	k: 1735	n:4680000
Cons ci ratio: 4.382655e-01	ci left: 1.336435e-05	ci right 2.103790e-05	k: 79	n:4680000
KS ci ratio: 1.231200e-02	ci left: 2.107075e-02	ci right 2.133198e-02	k: 99221	n:4680000
ZNF782   4680000 perm   9254 sec   (506 perm/sec)   p_kst 2.120107e-02   p_cons 1.688034e-05   p_joint 3.707265e-04

Joint ci ratio: 9.398438e-02	ci left: 3.533594e-04	ci right 3.884136e-04	k: 1738	n:4690000
Cons ci ratio: 4.382655e-01	ci left: 1.333585e-05	ci right 2.099304e-05	k: 79	n:4690000
KS ci ratio: 1.229963e-02	ci left: 2.106833e-02	ci right 2.132928e-02	k: 99421	n:4690000
ZNF782   4690000 perm   9293 sec   (505 perm/sec)   p_kst 2.119851e-02   p_cons 1.684435e-05   p_joint 3.705757e-04

Joint ci ratio: 9.384955e-02	ci left: 3.536465e-04	ci right 3.886760e-04	k: 1743	n:4700000
Cons ci ratio: 4.382655e-01	ci left: 1.330748e-05	ci right 2.094838e-05	k: 79	n:4700000
KS ci ratio: 1.228799e-02	ci left: 2.106359e-02	ci right 2.132423e-02	k: 99610	n:4700000
ZNF782   4700000 perm   9331 sec   (504 perm/sec)   p_kst 2.119362e-02   p_cons 1.680851e-05   p_joint 3.708511e-04

Joint ci ratio: 9.384959e-02	ci left: 3.528956e-04	ci right 3.878508e-04	k: 1743	n:4710000
Cons ci ratio: 4.382656e-01	ci left: 1.327922e-05	ci right 2.090390e-05	k: 79	n:4710000
KS ci ratio: 1.227418e-02	ci left: 2.106629e-02	ci right 2.132666e-02	k: 99834	n:4710000
ZNF782   4710000 perm   9369 sec   (503 perm/sec)   p_kst 2.119618e-02   p_cons 1.677282e-05   p_joint 3.700637e-04

Joint ci ratio: 9.384962e-02	ci left: 3.521479e-04	ci right 3.870291e-04	k: 1743	n:4720000
Cons ci ratio: 4.382656e-01	ci left: 1.325109e-05	ci right 2.085961e-05	k: 79	n:4720000
KS ci ratio: 1.226173e-02	ci left: 2.106453e-02	ci right 2.132462e-02	k: 100037	n:4720000
ZNF782   4720000 perm   9408 sec   (502 perm/sec)   p_kst 2.119428e-02   p_cons 1.673729e-05   p_joint 3.692797e-04

Joint ci ratio: 9.379587e-02	ci left: 3.518163e-04	ci right 3.866436e-04	k: 1745	n:4730000
Cons ci ratio: 4.382656e-01	ci left: 1.322308e-05	ci right 2.081551e-05	k: 79	n:4730000
KS ci ratio: 1.224913e-02	ci left: 2.106341e-02	ci right 2.132322e-02	k: 100243	n:4730000
ZNF782   4730000 perm   9446 sec   (501 perm/sec)   p_kst 2.119302e-02   p_cons 1.670190e-05   p_joint 3.689218e-04

Joint ci ratio: 9.366185e-02	ci left: 3.521042e-04	ci right 3.869075e-04	k: 1750	n:4740000
Cons ci ratio: 4.382656e-01	ci left: 1.319518e-05	ci right 2.077160e-05	k: 79	n:4740000
KS ci ratio: 1.223838e-02	ci left: 2.105620e-02	ci right 2.131569e-02	k: 100420	n:4740000
ZNF782   4740000 perm   9484 sec   (500 perm/sec)   p_kst 2.118565e-02   p_cons 1.666667e-05   p_joint 3.691983e-04

Joint ci ratio: 9.355505e-02	ci left: 3.521854e-04	ci right 3.869547e-04	k: 1754	n:4750000
Cons ci ratio: 4.382656e-01	ci left: 1.316740e-05	ci right 2.072787e-05	k: 79	n:4750000
KS ci ratio: 1.222529e-02	ci left: 2.105700e-02	ci right 2.131622e-02	k: 100635	n:4750000
ZNF782   4750000 perm   9522 sec   (499 perm/sec)   p_kst 2.118632e-02   p_cons 1.663158e-05   p_joint 3.692632e-04

Joint ci ratio: 9.339551e-02	ci left: 3.526765e-04	ci right 3.874318e-04	k: 1760	n:4760000
Cons ci ratio: 4.355518e-01	ci left: 1.332671e-05	ci right 2.091738e-05	k: 80	n:4760000
KS ci ratio: 1.221250e-02	ci left: 2.105695e-02	ci right 2.131590e-02	k: 100846	n:4760000
ZNF782   4760000 perm   9561 sec   (498 perm/sec)   p_kst 2.118613e-02   p_cons 1.680672e-05   p_joint 3.697479e-04

Joint ci ratio: 9.328962e-02	ci left: 3.527562e-04	ci right 3.874777e-04	k: 1764	n:4770000
Cons ci ratio: 4.355518e-01	ci left: 1.329877e-05	ci right 2.087353e-05	k: 80	n:4770000
KS ci ratio: 1.220079e-02	ci left: 2.105336e-02	ci right 2.131201e-02	k: 101040	n:4770000
ZNF782   4770000 perm   9599 sec   (497 perm/sec)   p_kst 2.118239e-02   p_cons 1.677149e-05   p_joint 3.698113e-04

Joint ci ratio: 1.188289e-01	ci left: 2.140878e-04	ci right 2.413353e-04	k: 1087	n:4780000
Cons ci ratio: 4.355518e-01	ci left: 1.327095e-05	ci right 2.082986e-05	k: 80	n:4780000
KS ci ratio: 1.218850e-02	ci left: 2.105186e-02	ci right 2.131023e-02	k: 101244	n:4780000
ZNF782   4780000 perm   9637 sec   (496 perm/sec)   p_kst 2.118075e-02   p_cons 1.673640e-05   p_joint 2.274059e-04

Joint ci ratio: 1.188289e-01	ci left: 2.136408e-04	ci right 2.408315e-04	k: 1087	n:4790000
Cons ci ratio: 4.355518e-01	ci left: 1.324324e-05	ci right 2.078637e-05	k: 80	n:4790000
KS ci ratio: 1.217558e-02	ci left: 2.105266e-02	ci right 2.131076e-02	k: 101459	n:4790000
ZNF782   4790000 perm   9676 sec   (495 perm/sec)   p_kst 2.118142e-02   p_cons 1.670146e-05   p_joint 2.269311e-04

Joint ci ratio: 1.186111e-01	ci left: 2.140043e-04	ci right 2.411879e-04	k: 1091	n:4800000
Cons ci ratio: 4.355518e-01	ci left: 1.321565e-05	ci right 2.074307e-05	k: 80	n:4800000
KS ci ratio: 1.216404e-02	ci left: 2.104888e-02	ci right 2.130669e-02	k: 101652	n:4800000
ZNF782   4800000 perm   9715 sec   (494 perm/sec)   p_kst 2.117750e-02   p_cons 1.666667e-05   p_joint 2.272917e-04

Joint ci ratio: 1.185026e-01	ci left: 2.139629e-04	ci right 2.411145e-04	k: 1093	n:4810000
Cons ci ratio: 4.355518e-01	ci left: 1.318818e-05	ci right 2.069994e-05	k: 80	n:4810000
KS ci ratio: 1.215174e-02	ci left: 2.104782e-02	ci right 2.130535e-02	k: 101858	n:4810000
ZNF782   4810000 perm   9754 sec   (493 perm/sec)   p_kst 2.117630e-02   p_cons 1.663202e-05   p_joint 2.272349e-04

Joint ci ratio: 1.183405e-01	ci left: 2.141230e-04	ci right 2.412551e-04	k: 1096	n:4820000
Cons ci ratio: 4.355519e-01	ci left: 1.316081e-05	ci right 2.065700e-05	k: 80	n:4820000
KS ci ratio: 1.213766e-02	ci left: 2.105297e-02	ci right 2.131026e-02	k: 102094	n:4820000
ZNF782   4820000 perm   9795 sec   (492 perm/sec)   p_kst 2.118133e-02   p_cons 1.659751e-05   p_joint 2.273859e-04

Joint ci ratio: 1.183405e-01	ci left: 2.136796e-04	ci right 2.407557e-04	k: 1096	n:4830000
Cons ci ratio: 4.355519e-01	ci left: 1.313357e-05	ci right 2.061423e-05	k: 80	n:4830000
KS ci ratio: 1.212562e-02	ci left: 2.105128e-02	ci right 2.130830e-02	k: 102297	n:4830000
ZNF782   4830000 perm   9834 sec   (491 perm/sec)   p_kst 2.117950e-02   p_cons 1.656315e-05   p_joint 2.269151e-04

Joint ci ratio: 1.182328e-01	ci left: 2.136391e-04	ci right 2.406837e-04	k: 1098	n:4840000
Cons ci ratio: 4.355519e-01	ci left: 1.310643e-05	ci right 2.057164e-05	k: 80	n:4840000
KS ci ratio: 1.211277e-02	ci left: 2.105249e-02	ci right 2.130924e-02	k: 102514	n:4840000
ZNF782   4840000 perm   9873 sec   (490 perm/sec)   p_kst 2.118058e-02   p_cons 1.652893e-05   p_joint 2.268595e-04

Joint ci ratio: 1.182328e-01	ci left: 2.131987e-04	ci right 2.401874e-04	k: 1098	n:4850000
Cons ci ratio: 4.355519e-01	ci left: 1.307941e-05	ci right 2.052922e-05	k: 80	n:4850000
KS ci ratio: 1.210081e-02	ci left: 2.105081e-02	ci right 2.130729e-02	k: 102717	n:4850000
ZNF782   4850000 perm   9912 sec   (489 perm/sec)   p_kst 2.117876e-02   p_cons 1.649485e-05   p_joint 2.263918e-04

Joint ci ratio: 1.180717e-01	ci left: 2.133590e-04	ci right 2.403287e-04	k: 1101	n:4860000
Cons ci ratio: 4.328879e-01	ci left: 1.323576e-05	ci right 2.071510e-05	k: 81	n:4860000
KS ci ratio: 1.208726e-02	ci left: 2.105468e-02	ci right 2.131092e-02	k: 102947	n:4860000
ZNF782   4860000 perm   9950 sec   (488 perm/sec)   p_kst 2.118251e-02   p_cons 1.666667e-05   p_joint 2.265432e-04

Joint ci ratio: 1.179648e-01	ci left: 2.133195e-04	ci right 2.402580e-04	k: 1103	n:4870000
Cons ci ratio: 4.328879e-01	ci left: 1.320858e-05	ci right 2.067257e-05	k: 81	n:4870000
KS ci ratio: 1.207519e-02	ci left: 2.105361e-02	ci right 2.130958e-02	k: 103153	n:4870000
ZNF782   4870000 perm   9989 sec   (488 perm/sec)   p_kst 2.118131e-02   p_cons 1.663244e-05   p_joint 2.264887e-04

Joint ci ratio: 1.178580e-01	ci left: 2.132801e-04	ci right 2.401876e-04	k: 1105	n:4880000
Cons ci ratio: 4.328879e-01	ci left: 1.318152e-05	ci right 2.063021e-05	k: 81	n:4880000
KS ci ratio: 1.206370e-02	ci left: 2.105072e-02	ci right 2.130641e-02	k: 103350	n:4880000
ZNF782   4880000 perm   10029 sec   (487 perm/sec)   p_kst 2.117828e-02   p_cons 1.659836e-05   p_joint 2.264344e-04

Joint ci ratio: 1.178581e-01	ci left: 2.128439e-04	ci right 2.396964e-04	k: 1105	n:4890000
Cons ci ratio: 4.328879e-01	ci left: 1.315456e-05	ci right 2.058802e-05	k: 81	n:4890000
KS ci ratio: 1.205253e-02	ci left: 2.104681e-02	ci right 2.130222e-02	k: 103542	n:4890000
ZNF782   4890000 perm   10068 sec   (486 perm/sec)   p_kst 2.117423e-02   p_cons 1.656442e-05   p_joint 2.259714e-04

Joint ci ratio: 1.176455e-01	ci left: 2.132018e-04	ci right 2.400476e-04	k: 1109	n:4900000
Cons ci ratio: 4.328879e-01	ci left: 1.312771e-05	ci right 2.054600e-05	k: 81	n:4900000
KS ci ratio: 1.204021e-02	ci left: 2.104700e-02	ci right 2.130214e-02	k: 103754	n:4900000
ZNF782   4900000 perm   10107 sec   (485 perm/sec)   p_kst 2.117429e-02   p_cons 1.653061e-05   p_joint 2.263265e-04

Joint ci ratio: 1.175926e-01	ci left: 2.129653e-04	ci right 2.397684e-04	k: 1110	n:4910000
Cons ci ratio: 4.302722e-01	ci left: 1.328251e-05	ci right 2.072982e-05	k: 82	n:4910000
KS ci ratio: 1.202852e-02	ci left: 2.104515e-02	ci right 2.130002e-02	k: 103956	n:4910000
ZNF782   4910000 perm   10147 sec   (484 perm/sec)   p_kst 2.117230e-02   p_cons 1.670061e-05   p_joint 2.260692e-04

Joint ci ratio: 1.174869e-01	ci left: 2.129270e-04	ci right 2.396995e-04	k: 1112	n:4920000
Cons ci ratio: 4.302722e-01	ci left: 1.325552e-05	ci right 2.068769e-05	k: 82	n:4920000
KS ci ratio: 1.201598e-02	ci left: 2.104635e-02	ci right 2.130097e-02	k: 104173	n:4920000
ZNF782   4920000 perm   10187 sec   (483 perm/sec)   p_kst 2.117337e-02   p_cons 1.666667e-05   p_joint 2.260163e-04

Joint ci ratio: 1.172763e-01	ci left: 2.132826e-04	ci right 2.400485e-04	k: 1116	n:4930000
Cons ci ratio: 4.302722e-01	ci left: 1.322863e-05	ci right 2.064572e-05	k: 82	n:4930000
KS ci ratio: 1.200407e-02	ci left: 2.104552e-02	ci right 2.129987e-02	k: 104380	n:4930000
ZNF782   4930000 perm   10227 sec   (482 perm/sec)   p_kst 2.117241e-02   p_cons 1.663286e-05   p_joint 2.263692e-04

Joint ci ratio: 1.172238e-01	ci left: 2.130474e-04	ci right 2.397709e-04	k: 1117	n:4940000
Cons ci ratio: 4.302722e-01	ci left: 1.320185e-05	ci right 2.060393e-05	k: 82	n:4940000
KS ci ratio: 1.199342e-02	ci left: 2.104045e-02	ci right 2.129452e-02	k: 104566	n:4940000
ZNF782   4940000 perm   10267 sec   (481 perm/sec)   p_kst 2.116721e-02   p_cons 1.659919e-05   p_joint 2.261134e-04

Joint ci ratio: 1.171715e-01	ci left: 2.128131e-04	ci right 2.394944e-04	k: 1118	n:4950000
Cons ci ratio: 4.277034e-01	ci left: 1.335538e-05	ci right 2.078602e-05	k: 83	n:4950000
KS ci ratio: 1.198093e-02	ci left: 2.104186e-02	ci right 2.129567e-02	k: 104784	n:4950000
ZNF782   4950000 perm   10306 sec   (480 perm/sec)   p_kst 2.116848e-02   p_cons 1.676768e-05   p_joint 2.258586e-04

Joint ci ratio: 1.170669e-01	ci left: 2.127754e-04	ci right 2.394266e-04	k: 1120	n:4960000
Cons ci ratio: 4.277034e-01	ci left: 1.332846e-05	ci right 2.074411e-05	k: 83	n:4960000
KS ci ratio: 1.196941e-02	ci left: 2.104004e-02	ci right 2.129359e-02	k: 104986	n:4960000
ZNF782   4960000 perm   10346 sec   (479 perm/sec)   p_kst 2.116653e-02   p_cons 1.673387e-05   p_joint 2.258065e-04

Joint ci ratio: 1.169626e-01	ci left: 2.127379e-04	ci right 2.393591e-04	k: 1122	n:4970000
Cons ci ratio: 4.277034e-01	ci left: 1.330164e-05	ci right 2.070237e-05	k: 83	n:4970000
KS ci ratio: 1.195653e-02	ci left: 2.104304e-02	ci right 2.129635e-02	k: 105212	n:4970000
ZNF782   4970000 perm   10387 sec   (479 perm/sec)   p_kst 2.116942e-02   p_cons 1.670020e-05   p_joint 2.257545e-04

Joint ci ratio: 1.169106e-01	ci left: 2.125057e-04	ci right 2.390851e-04	k: 1123	n:4980000
Cons ci ratio: 4.277034e-01	ci left: 1.327493e-05	ci right 2.066080e-05	k: 83	n:4980000
KS ci ratio: 1.194502e-02	ci left: 2.104143e-02	ci right 2.129447e-02	k: 105415	n:4980000
ZNF782   4980000 perm   10427 sec   (478 perm/sec)   p_kst 2.116767e-02   p_cons 1.666667e-05   p_joint 2.255020e-04

Joint ci ratio: 1.168067e-01	ci left: 2.124689e-04	ci right 2.390185e-04	k: 1125	n:4990000
Cons ci ratio: 4.277034e-01	ci left: 1.324833e-05	ci right 2.061940e-05	k: 83	n:4990000
KS ci ratio: 1.193360e-02	ci left: 2.103962e-02	ci right 2.129240e-02	k: 105617	n:4990000
ZNF782   4990000 perm   10467 sec   (477 perm/sec)   p_kst 2.116573e-02   p_cons 1.663327e-05   p_joint 2.254509e-04

Joint ci ratio: 1.165482e-01	ci left: 2.130148e-04	ci right 2.395696e-04	k: 1130	n:5000000
Cons ci ratio: 4.277034e-01	ci left: 1.322183e-05	ci right 2.057816e-05	k: 83	n:5000000
KS ci ratio: 1.192107e-02	ci left: 2.104181e-02	ci right 2.129435e-02	k: 105839	n:5000000
ZNF782   5000000 perm   10508 sec   (476 perm/sec)   p_kst 2.116780e-02   p_cons 1.660000e-05   p_joint 2.260000e-04

Outputting figure to mutsig2_images.part000000000199/ZNF782.3_2116_5000000_0.021168_1.66e-05_0.000226.png
                gene_name: ZNF782
               theta_stop: 0.43 
                    nperm: 5000000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.021 
                   p_cons: 1.66e-05 
      ci_cons_bounds_left: 1.32e-05 
     ci_cons_bounds_right: 2.06e-05 
                  p_joint: 0.00023 
     ci_joint_bounds_left: 0.00021 
    ci_joint_bounds_right: 0.00024 

Current progress: 69 percent done.
ZNF786
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
Cons ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
KS ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
ZNF786   10000 perm   2 sec   (5609 perm/sec)   p_kst 9.722000e-01   p_cons 3.086000e-01   p_joint 6.485000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF786.3_2365_10000_0.9722_0.3086_0.6485.png
                gene_name: ZNF786
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 71 percent done.
ZNF792
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
ZNF792   10000 perm   2 sec   (5884 perm/sec)   p_kst 7.150000e-01   p_cons 7.101000e-01   p_joint 9.926000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF792.3_1915_10000_0.715_0.7101_0.9926.png
                gene_name: ZNF792
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 73 percent done.
ZNF670
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
Cons ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
KS ci ratio: 1.641767e-02	ci left: 8.436649e-01	ci right 8.577302e-01	k: 8508	n:10000
ZNF670   10000 perm   2 sec   (6389 perm/sec)   p_kst 8.508000e-01   p_cons 1.374000e-01   p_joint 9.104000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF670.2_1186_10000_0.8508_0.1374_0.9104.png
                gene_name: ZNF670
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 75 percent done.
ZNF682
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
Cons ci ratio: 6.296845e-02	ci left: 2.704228e-01	ci right 2.881060e-01	k: 2792	n:10000
KS ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
ZNF682   10000 perm   2 sec   (6281 perm/sec)   p_kst 8.373000e-01   p_cons 2.792000e-01   p_joint 9.330000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF682.2_1513_10000_0.8373_0.2792_0.933.png
                gene_name: ZNF682
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 76 percent done.
ZNF69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
Cons ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KS ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
ZNF69   10000 perm   1 sec   (6873 perm/sec)   p_kst 3.417000e-01   p_cons 2.295000e-01   p_joint 8.291000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF69.2_470_10000_0.3417_0.2295_0.8291.png
                gene_name: ZNF69
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 78 percent done.
ZNF691
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
KS ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
ZNF691   10000 perm   1 sec   (6902 perm/sec)   p_kst 3.225000e-01   p_cons 9.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF691.2_859_10000_0.3225_0.9514_1.png
                gene_name: ZNF691
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ZNF701
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
ZNF701   10000 perm   2 sec   (6189 perm/sec)   p_kst 7.173000e-01   p_cons 7.080000e-02   p_joint 1.539000e-01

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
KS ci ratio: 1.759849e-02	ci left: 7.063731e-01	ci right 7.189650e-01	k: 14254	n:20000
ZNF701   20000 perm   4 sec   (5469 perm/sec)   p_kst 7.127000e-01   p_cons 6.530000e-02   p_joint 8.795000e-02

Joint ci ratio: 5.714102e-02	ci left: 1.317117e-01	ci right 1.394924e-01	k: 4067	n:30000
Cons ci ratio: 8.614329e-02	ci left: 6.177862e-02	ci right 6.737273e-02	k: 1936	n:30000
KS ci ratio: 1.427571e-02	ci left: 7.102232e-01	ci right 7.204684e-01	k: 21461	n:30000
ZNF701   30000 perm   6 sec   (5258 perm/sec)   p_kst 7.153667e-01   p_cons 6.453333e-02   p_joint 1.355667e-01

Outputting figure to mutsig2_images.part000000000199/ZNF701.2_1612_30000_0.71537_0.064533_0.13557.png
                gene_name: ZNF701
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 81 percent done.
ZNF704
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
KS ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
ZNF704   10000 perm   2 sec   (6604 perm/sec)   p_kst 8.672000e-01   p_cons 4.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF704.2_1271_10000_0.8672_0.4817_1.png
                gene_name: ZNF704
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNF706
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
Cons ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
KS ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
ZNF706   10000 perm   1 sec   (7365 perm/sec)   p_kst 4.080000e-01   p_cons 5.106000e-01   p_joint 5.311000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF706.2_239_10000_0.408_0.5106_0.5311.png
                gene_name: ZNF706
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 85 percent done.
ZNF708
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
Cons ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
KS ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
ZNF708   10000 perm   2 sec   (6226 perm/sec)   p_kst 5.638000e-01   p_cons 6.130000e-02   p_joint 3.248000e-01

Joint ci ratio: 3.874868e-02	ci left: 3.318910e-01	ci right 3.450560e-01	k: 6769	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 2.466071e-02	ci left: 5.512345e-01	ci right 5.650486e-01	k: 11163	n:20000
ZNF708   20000 perm   4 sec   (5518 perm/sec)   p_kst 5.581500e-01   p_cons 6.230000e-02   p_joint 3.384500e-01

Joint ci ratio: 3.123503e-02	ci left: 3.388556e-01	ci right 3.496412e-01	k: 10327	n:30000
Cons ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
KS ci ratio: 1.987921e-02	ci left: 5.588333e-01	ci right 5.700876e-01	k: 16934	n:30000
ZNF708   30000 perm   6 sec   (5238 perm/sec)   p_kst 5.644667e-01   p_cons 6.213333e-02   p_joint 3.442333e-01

Outputting figure to mutsig2_images.part000000000199/ZNF708.2_1708_30000_0.56447_0.062133_0.34423.png
                gene_name: ZNF708
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 86 percent done.
ZNF709
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
KS ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
ZNF709   10000 perm   2 sec   (6016 perm/sec)   p_kst 4.652000e-01   p_cons 9.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF709.2_1942_10000_0.4652_0.9789_1.png
                gene_name: ZNF709
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ZNF714
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
Cons ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
KS ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
ZNF714   10000 perm   2 sec   (6129 perm/sec)   p_kst 9.423000e-01   p_cons 6.801000e-01   p_joint 9.146000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF714.2_1677_10000_0.9423_0.6801_0.9146.png
                gene_name: ZNF714
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 90 percent done.
ZNF718
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 92 percent done.
ZNF732
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
ZNF732   10000 perm   2 sec   (6132 perm/sec)   p_kst 1.328000e-01   p_cons 8.104000e-01   p_joint 7.625000e-01

Joint ci ratio: 1.505725e-02	ci left: 7.662726e-01	ci right 7.779482e-01	k: 15443	n:20000
Cons ci ratio: 1.349262e-02	ci left: 8.029265e-01	ci right 8.138837e-01	k: 16169	n:20000
KS ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
ZNF732   20000 perm   4 sec   (5412 perm/sec)   p_kst 1.276500e-01   p_cons 8.084500e-01   p_joint 7.721500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF732.2_1767_20000_0.12765_0.80845_0.77215.png
                gene_name: ZNF732
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 93 percent done.
ZNF768
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
ZNF768   10000 perm   2 sec   (6176 perm/sec)   p_kst 8.943000e-01   p_cons 4.747000e-01   p_joint 8.975000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF768.2_1631_10000_0.8943_0.4747_0.8975.png
                gene_name: ZNF768
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 95 percent done.
ZNF775
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
Cons ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
KS ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
ZNF775   10000 perm   2 sec   (6185 perm/sec)   p_kst 2.330000e-02   p_cons 2.489000e-01   p_joint 1.506000e-01

Joint ci ratio: 6.511643e-02	ci left: 1.483819e-01	ci right 1.584191e-01	k: 3067	n:20000
Cons ci ratio: 4.802881e-02	ci left: 2.438122e-01	ci right 2.558606e-01	k: 4996	n:20000
KS ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
ZNF775   20000 perm   4 sec   (5469 perm/sec)   p_kst 2.170000e-02   p_cons 2.498000e-01   p_joint 1.533500e-01

Joint ci ratio: 5.250219e-02	ci left: 1.525702e-01	ci right 1.608297e-01	k: 4700	n:30000
Cons ci ratio: 4.090962e-02	ci left: 2.295163e-01	ci right 2.391352e-01	k: 7029	n:30000
KS ci ratio: 1.506624e-01	ci left: 2.040200e-02	ci right 2.375811e-02	k: 661	n:30000
ZNF775   30000 perm   6 sec   (5192 perm/sec)   p_kst 2.203333e-02   p_cons 2.343000e-01   p_joint 1.566667e-01

Joint ci ratio: 4.472600e-02	ci left: 1.574848e-01	ci right 1.647145e-01	k: 6443	n:40000
Cons ci ratio: 3.538528e-02	ci left: 2.306033e-01	ci right 2.389352e-01	k: 9390	n:40000
KS ci ratio: 1.324608e-01	ci left: 2.000416e-02	ci right 2.286591e-02	k: 856	n:40000
ZNF775   40000 perm   8 sec   (5015 perm/sec)   p_kst 2.140000e-02   p_cons 2.347500e-01   p_joint 1.610750e-01

Joint ci ratio: 6.936360e-02	ci left: 5.795364e-02	ci right 6.213762e-02	k: 3001	n:50000
Cons ci ratio: 3.164915e-02	ci left: 2.310504e-01	ci right 2.385005e-01	k: 11738	n:50000
KS ci ratio: 1.182655e-01	ci left: 2.022707e-02	ci right 2.278890e-02	k: 1074	n:50000
ZNF775   50000 perm   10 sec   (4866 perm/sec)   p_kst 2.148000e-02   p_cons 2.347600e-01   p_joint 6.002000e-02

Joint ci ratio: 3.987369e-02	ci left: 1.359601e-01	ci right 1.415082e-01	k: 8323	n:60000
Cons ci ratio: 2.887928e-02	ci left: 2.315290e-01	ci right 2.383300e-01	k: 14095	n:60000
KS ci ratio: 1.083482e-01	ci left: 2.019203e-02	ci right 2.252125e-02	k: 1280	n:60000
ZNF775   60000 perm   13 sec   (4754 perm/sec)   p_kst 2.133333e-02   p_cons 2.349167e-01   p_joint 1.387167e-01

Joint ci ratio: 3.193270e-02	ci left: 1.743067e-01	ci right 1.799773e-01	k: 12399	n:70000
Cons ci ratio: 2.679809e-02	ci left: 2.309671e-01	ci right 2.372549e-01	k: 16387	n:70000
KS ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
ZNF775   70000 perm   15 sec   (4651 perm/sec)   p_kst 2.125714e-02   p_cons 2.341000e-01   p_joint 1.771286e-01

Joint ci ratio: 3.060718e-02	ci left: 1.675395e-01	ci right 1.727595e-01	k: 13611	n:80000
Cons ci ratio: 2.508144e-02	ci left: 2.309701e-01	ci right 2.368492e-01	k: 18712	n:80000
KS ci ratio: 9.465689e-02	ci left: 1.999315e-02	ci right 2.199180e-02	k: 1678	n:80000
ZNF775   80000 perm   18 sec   (4568 perm/sec)   p_kst 2.097500e-02   p_cons 2.339000e-01   p_joint 1.701375e-01

Outputting figure to mutsig2_images.part000000000199/ZNF775.2_1622_80000_0.020975_0.2339_0.17014.png
                gene_name: ZNF775
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 97 percent done.
ZNF790
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.820875e-03	ci left: 9.578562e-01	ci right 9.654718e-01	k: 9618	n:10000
KS ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
ZNF790   10000 perm   2 sec   (6063 perm/sec)   p_kst 9.597000e-01   p_cons 9.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF790.2_1927_10000_0.9597_0.9618_1.png
                gene_name: ZNF790
               theta_stop: 0.0080 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZNF793
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
Cons ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KS ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
ZNF793   10000 perm   1 sec   (6757 perm/sec)   p_kst 6.048000e-01   p_cons 5.650000e-02   p_joint 5.760000e-02

Joint ci ratio: 1.106458e-01	ci left: 5.577376e-02	ci right 6.235516e-02	k: 1180	n:20000
Cons ci ratio: 1.164706e-01	ci left: 5.047003e-02	ci right 5.676054e-02	k: 1071	n:20000
KS ci ratio: 2.230466e-02	ci left: 6.001407e-01	ci right 6.137282e-01	k: 12139	n:20000
ZNF793   20000 perm   3 sec   (5911 perm/sec)   p_kst 6.069500e-01   p_cons 5.355000e-02   p_joint 5.900000e-02

Joint ci ratio: 9.725848e-02	ci left: 4.886307e-02	ci right 5.389093e-02	k: 1540	n:30000
Cons ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
KS ci ratio: 1.831203e-02	ci left: 5.987734e-01	ci right 6.098731e-01	k: 18130	n:30000
ZNF793   30000 perm   5 sec   (5597 perm/sec)   p_kst 6.043333e-01   p_cons 5.330000e-02   p_joint 5.133333e-02

Outputting figure to mutsig2_images.part000000000199/ZNF793.2_1237_30000_0.60433_0.0533_0.051333.png
                gene_name: ZNF793
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000199
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 199 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 4422736: <scatter_216246> Done

Job <scatter_216246> was submitted from host <node447> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000200> was used as the working directory.
Started at Wed Oct 24 18:12:41 2012
Results reported at Wed Oct 24 18:28:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000200.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000200.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 200  -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000200.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    935.82 sec.
    Max Memory :      5345 MB
    Max Swap   :      7696 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
200
-i
LUAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 200
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUAD"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 151 double-null mutations.
Removed assignments of their 185 partner-null mutations; these will be omitted from analysis.

                                0      1      2      3      4     5    6      TOTAL  
           Frame_Shift_Del     23      0      0      0      0  1354   13       1390  
           Frame_Shift_Ins      2      0      0      0      0   559    6        567  
              In_Frame_Del      0      0      0      0      0   202    0        202  
              In_Frame_Ins      0      0      0      0      0    29    0         29  
                  Missense      1      4     80     27     11    49    0        172  
         Missense_Mutation      0   8964  22227  19225  10902     0    0      61318  
         Nonsense_Mutation    156      0      0      0      3  4997  107       5263  
          Nonstop_Mutation      0      0      0      0      0    59    0         59  
                    Silent      0   5838   5588   8365   3450     0    0      23241  
               Splice_Site     25      0      0      0      0  1887   25       1937  
    Translation_Start_Site      0      2     88     34     16     3    0        143  

                     TOTAL    207  14808  27983  27651  14382  9139  151      94321  

0 unassigned   
1 *CpG->A      
2 *Cp(A/C/T)->A
3 C->(T/G)     
4 A->mut       
5 indel+null   
6 double_null  
Mutations not in gene set:
           AGAP4: [1]
           AGBL3: [1]
          ARL17A: [1]
             ARX: [1]
          ASAH2B: [1]
        C14orf48: [1]
        C19orf34: [1]
        C19orf69: [1]
        C1orf180: [1]
         C1orf68: [1]
            C3P1: [1]
         C3orf65: [1]
         C3orf77: [1]
             C4A: [1]
         C8orf83: [1]
       C9orf144B: [1]
           CBWD3: [1]
          CDKN1C: [1]
           CDR2L: [1]
           CHST7: [1]
          CLDN23: [1]
            CMAH: [1]
          CSDAP1: [1]
          CT47A6: [1]
           CTRB2: [1]
           DACT3: [1]
        DEFB105A: [1]
       DPY19L2P2: [1]
          EIF3CL: [1]
            F8A1: [1]
         FAM183B: [1]
         FAM194B: [1]
          FAM22A: [1]
         FAM35B2: [1]
           FHAD1: [1]
          FIGNL2: [1]
        FLJ39653: [1]
        FLJ43859: [1]
        FLJ44082: [1]
           FMO6P: [1]
           FMO9P: [1]
           FOXD1: [1]
            FRG2: [1]
         GLTSCR1: [1]
        GOLGA6L1: [1]
        GOLGA8DP: [1]
         GOLGA8E: [1]
         GOLGA8F: [1]
         GOLGA9P: [1]
           GPR44: [1]
            GSC2: [1]
          GUSBL2: [1]
             H19: [1]
           H2BFM: [1]
         HEATR7A: [1]
            HES2: [1]
          HIATL2: [1]
        HLA-DQB2: [1]
           HLA-J: [1]
           HLA-L: [1]
          HMGXB3: [1]
           IKBKG: [1]
            IRGM: [1]
        KIAA1107: [1]
           LCE3C: [1]
            LIPM: [1]
    LOC100132247: [1]
    LOC100287718: [1]
    LOC100288778: [1]
       LOC134466: [1]
       LOC202181: [1]
       LOC285501: [1]
       LOC348926: [1]
       LOC388955: [1]
       LOC440461: [1]
       LOC441294: [1]
       LOC595101: [1]
       LOC642846: [1]
       LOC643677: [1]
       LOC644936: [1]
       LOC645332: [1]
       LOC647121: [1]
       LOC647309: [1]
       LOC653544: [1]
       LOC653566: [1]
       LOC653653: [1]
        LOC90586: [1]
        LOC91948: [1]
         LRRC37A: [1]
        LRRC37B2: [1]
          MAP6D1: [1]
         MEIS3P1: [1]
          NACAP1: [1]
          NANOS1: [1]
           NCF1B: [1]
      NCRNA00188: [1]
           NPY6R: [1]
         NSUN5P1: [1]
           OR6P1: [1]
        PCDHGB8P: [1]
          PDIA3P: [1]
          PKD1L3: [1]
          PMS2CL: [1]
          PMS2L5: [1]
           POTEB: [1]
           POTED: [1]
         PPP4R1L: [1]
         PRAMEF8: [1]
          PRSS41: [1]
         PTPN20B: [1]
           PTPRQ: [1]
           RASA4: [1]
          RBMY1B: [1]
          RFPL4A: [1]
           RGPD1: [1]
           RGPD5: [1]
           RGSL1: [1]
         RIMBP3C: [1]
       RPL13AP20: [1]
        RPL13AP6: [1]
         RPLP0P2: [1]
         RPSAP52: [1]
          RPSAP9: [1]
         RUNDC2C: [1]
           SERHL: [1]
          SH3D20: [1]
        SIGLECP3: [1]
        SLC35E2B: [1]
          SMEK3P: [1]
           SSC5D: [1]
         STAG3L3: [1]
         TBC1D3G: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM129: [1]
            URB1: [1]
          USP27X: [1]
          WASH5P: [1]
          ZNF444: [1]
          ZNF579: [1]
          ZNF833: [1]
          ZSWIM6: [1]
         ABCA11P: [2]
         ABCC6P2: [2]
       ANKRD20A3: [2]
         ANXA2P2: [2]
         ATXN7L1: [2]
        C12orf32: [2]
       C21orf128: [2]
        C21orf62: [2]
        C22orf30: [2]
        C6orf103: [2]
         CCDC160: [2]
           CDHR4: [2]
           CFC1B: [2]
           CHIC1: [2]
         CXCR2P1: [2]
           DDX12: [2]
           DPCR1: [2]
           DTHD1: [2]
         EP400NL: [2]
         FAM10A4: [2]
          FAM22D: [2]
         FAM75A5: [2]
          FAM86D: [2]
        FLJ40504: [2]
           FOXI2: [2]
           FRG1B: [2]
            GK3P: [2]
         HERC2P2: [2]
            HSN2: [2]
           IGLL3: [2]
        KIAA1239: [2]
           LCE3B: [2]
       LOC285074: [2]
       LOC344967: [2]
       LOC399815: [2]
       LOC400696: [2]
       LOC643955: [2]
       LOC727896: [2]
       LOC728989: [2]
            LYL1: [2]
        LYPLA2P1: [2]
          MSTO2P: [2]
           MUC12: [2]
           NCF1C: [2]
      NCRNA00207: [2]
          NEURL3: [2]
           PAGE3: [2]
            PARG: [2]
          PDXDC2: [2]
            PRKY: [2]
          PTTG3P: [2]
         REXO1L1: [2]
         RHOXF2B: [2]
         RPSAP58: [2]
          RRN3P1: [2]
          SDHAP1: [2]
          SDHAP2: [2]
       SERPINA13: [2]
        SLC22A24: [2]
           WDFY4: [2]
         ABCC6P1: [3]
         ANKRD58: [3]
        C17orf97: [3]
       C20orf191: [3]
         C2orf52: [3]
         CEP170L: [3]
            CES4: [3]
          CTAGE6: [3]
         CXADRP2: [3]
        CYP2B7P1: [3]
          DNAH12: [3]
          DNAH14: [3]
        FUNDC2P2: [3]
         GOLGA8C: [3]
           GP1BA: [3]
          GUSBP1: [3]
           GVIN1: [3]
         KIR3DX1: [3]
       LOC150776: [3]
       LOC407835: [3]
       LOC442421: [3]
       LOC644165: [3]
       LOC653786: [3]
       LOC728024: [3]
             LOR: [3]
          LOXHD1: [3]
         NBPF22P: [3]
         NSUN5P2: [3]
             NYX: [3]
        PLEKHM1P: [3]
        POM121L2: [3]
         PRAMEF6: [3]
          PSAPL1: [3]
        SLC7A5P2: [3]
            SSX6: [3]
            TCL6: [3]
          TUBBP5: [3]
           WDR87: [3]
          ALMS1P: [4]
        ANKRD20B: [4]
        C1orf200: [4]
         CXorf64: [4]
         EIF3IP1: [4]
          GMCL1L: [4]
         GSTM2P1: [4]
       HNRNPA3P1: [4]
           HSPA7: [4]
          KIF26A: [4]
       LOC338651: [4]
       LOC647288: [4]
        LOC93432: [4]
            NAIP: [4]
          OR6W1P: [4]
        PPP1R2P3: [4]
          SHISA9: [4]
          TBC1D3: [4]
        TMEM132C: [4]
          TUBA4B: [4]
          ZNF525: [4]
           AMY1A: [5]
        CSNK2A1P: [5]
           CTSL3: [5]
           ESPNP: [5]
       HSD17B7P2: [5]
       HSP90AB4P: [5]
        HSP90B3P: [5]
       LOC284441: [5]
           NXF2B: [5]
           OR1D4: [5]
           OR3A4: [5]
           PIPSL: [5]
            RTL1: [5]
        SLC6A10P: [5]
            TRY6: [5]
            BCL8: [6]
       C20orf200: [6]
           DNAH6: [6]
       DPY19L2P1: [6]
         FAM75A2: [6]
         GOLGA6B: [6]
            MRC1: [6]
          OR1F2P: [6]
          OR7E5P: [6]
        PIP5K1P1: [6]
        TMED10P1: [6]
          ZNF271: [6]
          BTN2A3: [7]
           CLK2P: [7]
          FKBP9L: [7]
        FLJ43950: [7]
       LOC200030: [7]
          OR2M1P: [7]
           P704P: [7]
        PABPC1P2: [7]
        ADAM21P1: [8]
       LOC220429: [8]
       LOC387646: [8]
          MST1P9: [8]
          MYADML: [8]
         PCDHB17: [8]
          PTENP1: [8]
        EEF1A1P9: [9]
          FAM45B: [9]
       LOC168474: [9]
       LOC401010: [9]
          RNF5P1: [9]
           UNC80: [9]
           IGFN1: [10]
       LOC440040: [10]
        TBC1D3P2: [10]
          CDC14C: [11]
      GTF2IRD2P1: [11]
       LOC645752: [11]
          OR2L1P: [11]
         PCDHB18: [11]
         COL29A1: [12]
           ADAM6: [13]
          FAM38B: [14]
          OR4N3P: [16]
         FAM75A3: [17]
             EYS: [23]
         Unknown: [351]
       ----TOTAL: [1304]
Categories not in categ set:
          NaN: [405]
    ----TOTAL: [405]
Mutations not in categ set:
              ABCA6: [1]
              ABCC1: [1]
              ADAM6: [1]
               AFF2: [1]
              AHNAK: [1]
            ALDH1A2: [1]
             ALKBH8: [1]
               AMPH: [1]
    ANKHD1-EIF4EBP3: [1]
           ANKRD30B: [1]
              ARAP1: [1]
            ARFGAP1: [1]
             ARID1A: [1]
             ARID4B: [1]
             ARMCX3: [1]
              ASB17: [1]
              ASCC3: [1]
               ASPH: [1]
              ASTN1: [1]
             ATP1A2: [1]
             ATP8B2: [1]
             ATP8B3: [1]
               BAI3: [1]
               BCL8: [1]
              BIRC6: [1]
              BMP10: [1]
           C12orf74: [1]
           C1orf129: [1]
           C1orf168: [1]
            C20orf4: [1]
            C4orf21: [1]
                 C7: [1]
            CACNA1E: [1]
            CACNA1H: [1]
             CACNB2: [1]
              CAPN5: [1]
             CCDC30: [1]
              CCKAR: [1]
               CD46: [1]
              CDH10: [1]
              CDH18: [1]
               CDH6: [1]
               CDH7: [1]
               CDH9: [1]
                CEL: [1]
               CHD2: [1]
              CLCA2: [1]
             CLEC2B: [1]
             CLSTN2: [1]
             CNKSR2: [1]
              CNTN4: [1]
            CNTNAP2: [1]
               COBL: [1]
            COL24A1: [1]
             COL5A1: [1]
             COL6A3: [1]
             COL9A2: [1]
             CORO1C: [1]
             CRIPAK: [1]
            CSNK1G1: [1]
               CUBN: [1]
            CWF19L2: [1]
             CYP2J2: [1]
               DBR1: [1]
            DCAF8L1: [1]
              DDX31: [1]
               DGKI: [1]
               DHFR: [1]
              DHX38: [1]
              DMBT1: [1]
                DMD: [1]
               DNA2: [1]
             DNAH10: [1]
              DNAH5: [1]
              DOCK2: [1]
              DOCK7: [1]
               DOK1: [1]
              DOT1L: [1]
               DPH5: [1]
               DPYD: [1]
            DYNC1H1: [1]
               DYTN: [1]
             EEF1A1: [1]
             EGFLAM: [1]
              EIF5B: [1]
              ELAC1: [1]
              ENPP2: [1]
               F13B: [1]
                 F3: [1]
             FAM47C: [1]
              FAM5C: [1]
             FAM71A: [1]
            FAM75A6: [1]
             FAM81A: [1]
              FANCM: [1]
             FER1L6: [1]
             FERMT1: [1]
              FNBP4: [1]
              FOXG1: [1]
              FRMD6: [1]
              FSCN3: [1]
             FTSJD2: [1]
               GCC1: [1]
               GCLC: [1]
              GJA10: [1]
               GJA9: [1]
             GPR125: [1]
              GPR98: [1]
             GPRIN1: [1]
              GRID1: [1]
              GRID2: [1]
               GUF1: [1]
               GUSB: [1]
              HADHA: [1]
               HELQ: [1]
              HERC1: [1]
             HMGCS1: [1]
             HMGXB4: [1]
             HNRNPD: [1]
             HS6ST1: [1]
              HSPA4: [1]
              HTR3A: [1]
              HYDIN: [1]
              IFNA7: [1]
              IFT46: [1]
            IL18RAP: [1]
              INSRR: [1]
              ITGAX: [1]
             JHDM1D: [1]
                JUN: [1]
             KBTBD3: [1]
              KDM6B: [1]
              KHNYN: [1]
           KIAA1751: [1]
          KIDINS220: [1]
              KIF5A: [1]
            KIRREL2: [1]
              KLF10: [1]
              KLHL1: [1]
              KRT6B: [1]
           KRTAP5-1: [1]
              L1CAM: [1]
               LAD1: [1]
              LAMA3: [1]
               LDLR: [1]
          LOC200030: [1]
          LOC220429: [1]
              LPAR1: [1]
              LPHN3: [1]
              LRP1B: [1]
             LRRC4C: [1]
              LZTR1: [1]
             MAGEB1: [1]
             MAGED2: [1]
            MAP3K12: [1]
               MARS: [1]
                MCC: [1]
              MDGA2: [1]
               MDN1: [1]
               MEFV: [1]
             MEGF10: [1]
              MEGF9: [1]
              MFSD8: [1]
             MGAT4C: [1]
              MIXL1: [1]
              MKI67: [1]
                MTR: [1]
               MTTP: [1]
              MUC16: [1]
              MYBPH: [1]
              MYH11: [1]
               MYH6: [1]
               MYH8: [1]
               MYL2: [1]
               MYL9: [1]
              MYO1H: [1]
              MYO5B: [1]
               MYO6: [1]
              NALCN: [1]
               NAV1: [1]
             NBEAL1: [1]
              NBPF1: [1]
             NBPF10: [1]
                NDN: [1]
              NDST4: [1]
                NEB: [1]
             NLRP10: [1]
               NONO: [1]
             NOTCH2: [1]
               NOX1: [1]
              NSUN2: [1]
               ODZ4: [1]
              OPHN1: [1]
             OR10G7: [1]
             OR10G9: [1]
             OR11H1: [1]
             OR13C4: [1]
              OR2F2: [1]
              OR2M3: [1]
             OR4C16: [1]
              OR4P4: [1]
             OR51T1: [1]
             OR56A4: [1]
             OR5D16: [1]
              OR5R1: [1]
              OR6C4: [1]
              OXCT1: [1]
        PALM2-AKAP2: [1]
              PARP4: [1]
              PARVG: [1]
            PCDHGA5: [1]
            PCDHGA9: [1]
               PCK1: [1]
               PCLO: [1]
              PCSK5: [1]
              PDE3A: [1]
              PEAR1: [1]
             PHLPP1: [1]
             PIK3R5: [1]
               PLD2: [1]
            PLEKHG1: [1]
             PLXNA1: [1]
              POF1B: [1]
              POSTN: [1]
             PPFIA3: [1]
            PPP2R5E: [1]
              PPRC1: [1]
                PTN: [1]
              PTPRA: [1]
              PXDNL: [1]
          RAB11FIP5: [1]
           RAB3GAP2: [1]
             RAB40C: [1]
             RANBP2: [1]
              REG1B: [1]
               RGS6: [1]
               ROR2: [1]
              RPL30: [1]
             RPS4Y2: [1]
               RPTN: [1]
           RSPH10B2: [1]
              RTDR1: [1]
               RXRB: [1]
              SAGE1: [1]
              SALL1: [1]
             SCUBE2: [1]
               SDK2: [1]
              SEMG1: [1]
              SETD2: [1]
             SGK269: [1]
            SHROOM4: [1]
            SLC12A2: [1]
            SLC17A9: [1]
            SLC35F1: [1]
             SLC5A1: [1]
            SLC6A11: [1]
            SLITRK5: [1]
            SMARCC1: [1]
            SMARCD2: [1]
               SMC6: [1]
               SND1: [1]
              SOAT1: [1]
             SPAG16: [1]
            SPATA17: [1]
             SPINK5: [1]
                SPR: [1]
              SRCAP: [1]
             SRGAP3: [1]
             STEAP1: [1]
             SWAP70: [1]
             TADA2B: [1]
              TESK1: [1]
               TFEC: [1]
              TGFBI: [1]
            TGIF2LX: [1]
              TIAM1: [1]
                TKT: [1]
               TLN2: [1]
               TMC1: [1]
                TNC: [1]
              TOR1B: [1]
              TPCN1: [1]
               TPK1: [1]
              TRIB1: [1]
             TRIM15: [1]
              TRPM1: [1]
              TRPM2: [1]
              TRPM6: [1]
               TSC2: [1]
               TTF2: [1]
            UBE2CBP: [1]
             UBE2Q2: [1]
              UTP20: [1]
              VCAM1: [1]
             VPS13B: [1]
              WDR19: [1]
              WDR35: [1]
                WLS: [1]
              WWTR1: [1]
               YBX2: [1]
            ZCCHC16: [1]
            ZDHHC13: [1]
            ZDHHC16: [1]
              ZG16B: [1]
             ZNF215: [1]
             ZNF273: [1]
             ZNF606: [1]
             ZNF782: [1]
              ZNF91: [1]
              ZNF99: [1]
             ZSCAN1: [1]
             AHNAK2: [2]
            COL11A1: [2]
              CSDE1: [2]
              CSMD1: [2]
              CSMD3: [2]
              DIS3L: [2]
               FBN2: [2]
           HEATR7B2: [2]
              HMCN1: [2]
               LRP2: [2]
               NAV3: [2]
              PRDM9: [2]
              SPTA1: [2]
              SYNE2: [2]
               TP53: [2]
             TRIP12: [2]
              USH2A: [2]
              USP34: [2]
              XIRP2: [2]
              ZFHX4: [2]
             ZNF423: [2]
              MUC17: [3]
             SAMD9L: [3]
             ZNF521: [3]
               FLG2: [4]
                NF1: [4]
               RYR2: [4]
               HRNR: [5]
            PDE4DIP: [5]
                FLG: [6]
                TTN: [15]
          ----TOTAL: [405]

Mutations in this patient+gene+categ set: 92616/94321
	0 mutations not in patient set
	1304 mutations not in gene set
	405 mutations not in categ set
		(Note: at least 151 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->A   2.34e-05   23.4/Mb  (relative = 2.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.10e-06    7.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.21e-06    3.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.29e-06    1.3/Mb  (relative = 0.13)
        double_null   2.15e-08    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUAD-05-4244-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.07)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-06    4.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4249-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4250-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4382-TP
            *CpG->A   5.74e-05   57.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.04e-05   40.4/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   2.20e-05   22.0/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   1.49e-05   14.9/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.06e-06    6.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   4.62e-05   46.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4384-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.35e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4389-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   7.68e-06    7.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.73e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4390-TP
            *CpG->A   2.35e-05   23.5/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   8.08e-06    8.1/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.76e-05   17.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4395-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.56e-06    7.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4396-TP
            *CpG->A   2.65e-03  2653.5/Mb  (relative = 8.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-04  268.4/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   1.40e-05   14.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.01)  expected NS/S ratio = 3.9
         indel+null   2.35e-05   23.5/Mb  (relative = 0.08)
        double_null   2.28e-06    2.3/Mb  (relative = 0.01)
              Total   3.03e-04  303.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4397-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.52e-05   15.2/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   1.65e-05   16.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   9.97e-06   10.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   3.35e-06    3.3/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.46e-05   24.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4398-TP
            *CpG->A   2.66e-05   26.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-05   16.2/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   1.42e-05   14.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   9.08e-06    9.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.55e-06    3.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.41e-05   24.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4402-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 1.28)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.09e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4403-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 2.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.40e-06    1.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4405-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.77e-06    8.8/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   5.53e-06    5.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4410-TP
            *CpG->A   6.28e-05   62.8/Mb  (relative = 1.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.68e-05   26.8/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.19e-05   11.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.12e-06    4.1/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.57e-05   35.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4415-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   1.98e-06    2.0/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.46e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4417-TP
            *CpG->A   5.86e-05   58.6/Mb  (relative = 4.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.02e-05   10.2/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.27)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.32e-05   13.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4418-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.08e-06    5.1/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.27e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4420-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.00e-06    7.0/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   4.73e-06    4.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.17e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4422-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.06)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4424-TP
            *CpG->A   3.26e-05   32.6/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.79e-05   17.9/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-05   14.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   8.12e-06    8.1/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-05   24.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4425-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.18e-06    1.2/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4426-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.03e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4427-TP
            *CpG->A   5.37e-05   53.7/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-05   25.8/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-05   17.7/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.34e-05   13.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.28e-06    4.3/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.47e-05   34.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4430-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.93)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4432-TP
            *CpG->A   2.29e-05   22.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   1.11e-05   11.1/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   8.94e-06    8.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.15e-06    3.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4433-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-4434-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5420-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5423-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.69)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.65e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5425-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.56)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5428-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.07e-06    7.1/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   9.26e-06    9.3/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5429-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   1.37e-07    0.1/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-05-5715-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   4.66e-06    4.7/Mb  (relative = 1.34)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z000-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.85e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z001-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   3.48e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z003-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.54e-06    3.5/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z004-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.27)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z005-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.31e-06    1.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z007-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z008-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.34e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.45e-06    5.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z009-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z010-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   4.14e-06    4.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.00e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z011-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z012-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.78)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.25e-05   12.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z013-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z014-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.19e-06    6.2/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z015-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.80e-06    9.8/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   1.10e-05   11.0/Mb  (relative = 0.71)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.54e-05   15.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z016-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z017-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z018-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z020-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.15)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.36e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z021-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.56e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z022-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.56e-05   25.6/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.02e-05   20.2/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.29e-05   12.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   3.43e-05   34.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z023-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 0.85)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.92e-06    6.9/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.21e-05   12.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z025-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.30e-06    5.3/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z026-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-05   14.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   2.96e-05   29.6/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   6.42e-06    6.4/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   4.08e-06    4.1/Mb  (relative = 0.13)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.04e-05   30.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z027-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.61e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z028-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   8.14e-06    8.1/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   5.12e-06    5.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.49e-05   14.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z030-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.39e-05   13.9/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   8.80e-06    8.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.74e-06    2.7/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z031-TP
            *CpG->A   9.60e-05   96.0/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.99e-05   49.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   2.73e-05   27.3/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   3.40e-05   34.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.36e-06    7.4/Mb  (relative = 0.11)
        double_null   3.35e-07    0.3/Mb  (relative = 0.01)
              Total   6.63e-05   66.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z032-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z033-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.46e-06    3.5/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z035-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.94)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.22)
        double_null   3.35e-08    0.0/Mb  (relative = 0.02)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z036-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.54)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-06    1.5/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z037-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.14)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 1.08)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z038-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 2.04)  expected NS/S ratio = 3.9
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z039-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-08    0.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z040-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.25e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z041-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.31)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z042-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.12e-05   11.2/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.50e-06    6.5/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.14e-06    2.1/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.36e-05   13.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z043-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z044-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.28e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.50e-05   15.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   9.59e-06    9.6/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   7.71e-06    7.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   2.98e-06    3.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.95e-05   19.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z046-TP
            *CpG->A   1.57e-05   15.7/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.06e-05   10.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.76e-06    6.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.40e-05   14.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z047-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-07    0.7/Mb  (relative = 0.70)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.39)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.04e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z048-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-07    0.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.44)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z049-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.05e-05   10.5/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.46e-06    5.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z050-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z051-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z052-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z053-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.32e-06    3.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.32e-06    2.3/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z054-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   6.83e-08    0.1/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-07    0.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z055-TP
            *CpG->A   2.42e-05   24.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-05   18.4/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   1.29e-05   12.9/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   1.11e-05   11.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.51e-05   25.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z056-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.28e-06    9.3/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   1.26e-05   12.6/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   6.07e-06    6.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-05   16.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z057-TP
            *CpG->A   9.66e-06    9.7/Mb  (relative = 0.82)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.76e-06    3.8/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
           C->(T/G)   1.30e-05   13.0/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   3.14e-06    3.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z058-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   1.44e-06    1.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.58e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z059-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.62e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z060-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.98e-06    4.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.96e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z061-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.28e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   2.80e-06    2.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.92e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-17-Z062-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.35e-05   13.5/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-06    6.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.11e-06    2.1/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-3615-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4122-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.75e-06    5.7/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   6.96e-06    7.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-4123-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-35-5375-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.15e-06    7.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   7.22e-06    7.2/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   5.87e-06    5.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.25e-05   12.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4625-TP
            *CpG->A   2.48e-05   24.8/Mb  (relative = 1.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.30e-05   13.0/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.04e-05   10.4/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.75e-05   17.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4626-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.91)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-05   10.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4627-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   1.05e-06    1.1/Mb  (relative = 0.80)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4628-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   3.61e-06    3.6/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.48e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4629-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.57e-06    4.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.63e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4630-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4631-TP
            *CpG->A   3.92e-05   39.2/Mb  (relative = 1.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.71e-05   17.1/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-06    9.8/Mb  (relative = 0.43)  expected NS/S ratio = 2.8
             A->mut   8.81e-06    8.8/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.71e-06    3.7/Mb  (relative = 0.16)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.31e-05   23.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-4632-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.14e-05   11.4/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.88e-06    7.9/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.48e-06    2.5/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.66e-05   16.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-38-6178-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.49)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2655-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.69)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.45e-06    5.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2656-TP
            *CpG->A   3.44e-05   34.4/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.25e-05   22.5/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   1.28e-05   12.8/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   8.53e-06    8.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   3.75e-06    3.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-05   26.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2657-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.13e-05   11.3/Mb  (relative = 0.92)  expected NS/S ratio = 5.0
           C->(T/G)   6.24e-06    6.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-05   12.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2659-TP
            *CpG->A   2.11e-05   21.1/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.04e-05   10.4/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   6.63e-06    6.6/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2661-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2662-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.35)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.99e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
           C->(T/G)   8.47e-06    8.5/Mb  (relative = 1.24)  expected NS/S ratio = 2.8
             A->mut   1.64e-06    1.6/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2665-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 1.03)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2666-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 5.0
           C->(T/G)   1.84e-06    1.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.67)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-2668-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.88e-06    7.9/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.89e-06    3.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.19e-05   11.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3396-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 1.11)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.62e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   1.71e-06    1.7/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.42e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3398-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.39e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.76)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.86e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3918-TP
            *CpG->A   4.59e-05   45.9/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.57e-05   25.7/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   1.50e-05   15.0/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   8.05e-06    8.1/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   3.68e-06    3.7/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.96e-05   29.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-3919-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.21)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.20)  expected NS/S ratio = 2.8
             A->mut   4.10e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-4112-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   6.43e-06    6.4/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.71e-06    1.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5643-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.69e-06    1.7/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.83)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-5645-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.84)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6144-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.64e-06    4.6/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   4.20e-06    4.2/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.46e-06    2.5/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.49e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6145-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.52)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.40e-06    8.4/Mb  (relative = 0.88)  expected NS/S ratio = 5.0
           C->(T/G)   4.01e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.8
             A->mut   3.48e-06    3.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6146-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.44)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.12e-06    1.1/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6147-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.90e-06    3.9/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.61)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6148-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-07    0.3/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.02e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6774-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 2.22)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.47e-06    8.5/Mb  (relative = 0.84)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6775-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 2.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 5.0
           C->(T/G)   2.04e-06    2.0/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.78e-06    3.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6776-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.23e-06    5.2/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   3.41e-06    3.4/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6777-TP
            *CpG->A   3.80e-05   38.0/Mb  (relative = 2.70)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.87e-06    9.9/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   7.94e-06    7.9/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-05   14.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6778-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.65)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-44-6779-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-06    2.1/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
           C->(T/G)   2.95e-06    3.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4486-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   1.06e-05   10.6/Mb  (relative = 1.26)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4487-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.61)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.72e-06    9.7/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.64e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.35e-05   13.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4488-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.58)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.78e-06    6.8/Mb  (relative = 0.77)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.80e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4490-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 1.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4494-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.01e-06    5.0/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.12e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4501-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.89e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.69e-06    2.7/Mb  (relative = 0.99)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.71e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4505-TP
            *CpG->A   4.23e-06    4.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   3.15e-06    3.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4506-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   1.91e-06    1.9/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4507-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.02e-06    3.0/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
           C->(T/G)   5.06e-06    5.1/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4510-TP
            *CpG->A   3.50e-05   35.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.67e-06    5.7/Mb  (relative = 0.97)  expected NS/S ratio = 5.0
           C->(T/G)   9.85e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.82e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4512-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.93)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-4514-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-06    6.6/Mb  (relative = 0.65)  expected NS/S ratio = 5.0
           C->(T/G)   8.21e-06    8.2/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6742-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-06    2.9/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
           C->(T/G)   9.39e-06    9.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   3.07e-06    3.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6743-TP
            *CpG->A   2.96e-05   29.6/Mb  (relative = 1.24)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.26e-05   12.6/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.76e-05   17.6/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   9.21e-06    9.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.95e-06    2.9/Mb  (relative = 0.12)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6744-TP
            *CpG->A   1.27e-05   12.7/Mb  (relative = 1.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.44e-06    7.4/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   4.92e-06    4.9/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.04e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6745-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-06    1.1/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   6.11e-06    6.1/Mb  (relative = 1.25)  expected NS/S ratio = 2.8
             A->mut   4.78e-07    0.5/Mb  (relative = 0.10)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-49-6767-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.11e-05   11.1/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   7.42e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   5.26e-06    5.3/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   2.01e-06    2.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.45e-05   14.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5044-TP
            *CpG->A   1.33e-05   13.3/Mb  (relative = 2.63)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
           C->(T/G)   5.91e-06    5.9/Mb  (relative = 1.17)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.05e-06    5.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5045-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.99e-06    9.0/Mb  (relative = 0.89)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.37)  expected NS/S ratio = 2.8
             A->mut   3.55e-06    3.5/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.27e-06    1.3/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.01e-05   10.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5049-TP
            *CpG->A   4.71e-05   47.1/Mb  (relative = 1.75)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.10e-05   21.0/Mb  (relative = 0.78)  expected NS/S ratio = 5.0
           C->(T/G)   1.21e-05   12.1/Mb  (relative = 0.45)  expected NS/S ratio = 2.8
             A->mut   1.05e-05   10.5/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.48e-06    3.5/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.69e-05   26.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5051-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 3.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.83e-06    3.8/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   2.63e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5055-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-07    0.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-07    0.9/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   3.35e-08    0.0/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.36e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5066-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.26e-06    6.3/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.37e-06    4.4/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5068-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.55e-06    1.5/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   2.43e-06    2.4/Mb  (relative = 0.81)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5072-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.17)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 5.0
           C->(T/G)   3.28e-06    3.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5930-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.71e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5931-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.11e-06    6.1/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   5.52e-06    5.5/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.30e-06    9.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5932-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.55)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.92e-06    1.9/Mb  (relative = 0.82)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5933-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.00e-05   10.0/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.35e-06    6.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.94e-06    1.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.72e-05   17.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5935-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   4.86e-06    4.9/Mb  (relative = 1.30)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5936-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.92e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5939-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 5.0
           C->(T/G)   2.82e-06    2.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5941-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-06    8.8/Mb  (relative = 0.69)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   4.71e-06    4.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.28e-05   12.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5942-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.31)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.84e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
           C->(T/G)   1.38e-06    1.4/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.65)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5944-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.42e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 1.06)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-5946-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 5.0
           C->(T/G)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.8
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6590-TP
            *CpG->A   3.56e-05   35.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.14e-05   21.4/Mb  (relative = 0.71)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-05   19.7/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   1.01e-05   10.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.18e-06    3.2/Mb  (relative = 0.11)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.00e-05   30.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6591-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.51)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.8
             A->mut   6.83e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.38e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6592-TP
            *CpG->A   9.06e-06    9.1/Mb  (relative = 0.98)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   6.83e-06    6.8/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   4.10e-06    4.1/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.20e-06    9.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6593-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.79)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.70e-06    6.7/Mb  (relative = 0.73)  expected NS/S ratio = 5.0
           C->(T/G)   5.12e-06    5.1/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   4.03e-06    4.0/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.01)
              Total   9.14e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6594-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.29e-05   12.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.01e-06    8.0/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.18)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.60e-05   16.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6595-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.58e-07    1.0/Mb  (relative = 0.26)  expected NS/S ratio = 5.0
           C->(T/G)   4.27e-06    4.3/Mb  (relative = 1.14)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.75e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-50-6597-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 2.74)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   1.97e-06    2.0/Mb  (relative = 0.75)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1592-TP
            *CpG->A   1.45e-05   14.5/Mb  (relative = 0.87)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.91e-06    8.9/Mb  (relative = 0.53)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.74)  expected NS/S ratio = 2.8
             A->mut   7.85e-06    7.8/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1594-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.80e-06    2.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.98)  expected NS/S ratio = 2.8
             A->mut   2.05e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1595-TP
            *CpG->A   1.39e-05   13.9/Mb  (relative = 1.92)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.68)  expected NS/S ratio = 5.0
           C->(T/G)   3.35e-06    3.3/Mb  (relative = 0.46)  expected NS/S ratio = 2.8
             A->mut   2.94e-06    2.9/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-1596-TP
            *CpG->A   6.64e-06    6.6/Mb  (relative = 1.12)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.65e-06    2.7/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   3.87e-06    3.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-5899-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.25)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.70)  expected NS/S ratio = 5.0
           C->(T/G)   8.54e-06    8.5/Mb  (relative = 0.66)  expected NS/S ratio = 2.8
             A->mut   4.23e-06    4.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.57e-06    1.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6543-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.80)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.57e-07    0.7/Mb  (relative = 0.65)  expected NS/S ratio = 2.8
             A->mut   3.41e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   2.34e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6642-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 3.16)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.35e-06    4.3/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   1.77e-06    1.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.8
             A->mut   1.50e-06    1.5/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.35e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-55-6712-TP
            *CpG->A   2.05e-05   20.5/Mb  (relative = 3.02)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.17e-06    3.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.8
             A->mut   1.02e-06    1.0/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1676-TP
            *CpG->A   3.62e-05   36.2/Mb  (relative = 2.05)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.41e-05   14.1/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   8.34e-06    8.3/Mb  (relative = 0.47)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.77e-05   17.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1677-TP
            *CpG->A   6.04e-06    6.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
           C->(T/G)   6.89e-06    6.9/Mb  (relative = 1.01)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1678-TP
            *CpG->A   1.75e-05   17.5/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   6.37e-06    6.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.41e-06    3.4/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   1.84e-06    1.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-1680-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.13)  expected NS/S ratio = 5.0
           C->(T/G)   2.36e-06    2.4/Mb  (relative = 1.05)  expected NS/S ratio = 2.8
             A->mut   7.51e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5774-TP
            *CpG->A   8.45e-06    8.5/Mb  (relative = 1.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-06    3.7/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   1.09e-06    1.1/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.42e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5775-TP
            *CpG->A   2.17e-05   21.7/Mb  (relative = 1.53)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   5.78e-06    5.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   2.44e-06    2.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5778-TP
            *CpG->A   2.23e-05   22.3/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.22e-05   12.2/Mb  (relative = 0.85)  expected NS/S ratio = 5.0
           C->(T/G)   7.03e-06    7.0/Mb  (relative = 0.49)  expected NS/S ratio = 2.8
             A->mut   4.64e-06    4.6/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.74e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5779-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.67)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.83)  expected NS/S ratio = 5.0
           C->(T/G)   6.17e-06    6.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   1.31e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-05   10.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5781-TP
            *CpG->A   4.65e-05   46.5/Mb  (relative = 1.36)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.54e-05   25.4/Mb  (relative = 0.75)  expected NS/S ratio = 5.0
           C->(T/G)   1.92e-05   19.2/Mb  (relative = 0.56)  expected NS/S ratio = 2.8
             A->mut   1.10e-05   11.0/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.72e-06    4.7/Mb  (relative = 0.14)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   3.41e-05   34.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-64-5815-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.13e-06    4.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   3.09e-06    3.1/Mb  (relative = 0.59)  expected NS/S ratio = 2.8
             A->mut   1.30e-06    1.3/Mb  (relative = 0.25)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.16)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3770-TP
            *CpG->A   1.03e-05   10.3/Mb  (relative = 1.42)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.49e-06    4.5/Mb  (relative = 0.62)  expected NS/S ratio = 5.0
           C->(T/G)   4.33e-06    4.3/Mb  (relative = 0.60)  expected NS/S ratio = 2.8
             A->mut   2.66e-06    2.7/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3771-TP
            *CpG->A   2.90e-05   29.0/Mb  (relative = 0.86)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.59e-05   15.9/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
           C->(T/G)   2.88e-05   28.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.15e-05   11.5/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   4.38e-06    4.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.35e-05   33.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3772-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.10e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
           C->(T/G)   2.10e-06    2.1/Mb  (relative = 0.91)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3773-TP
            *CpG->A   5.43e-06    5.4/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.58e-06    2.6/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.23e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-3774-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.06e-06    2.1/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
           C->(T/G)   3.81e-06    3.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.8
             A->mut   1.37e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.15e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-4679-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.34)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.04e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   4.46e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.8
             A->mut   3.34e-06    3.3/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.00e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6215-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.07)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.8
             A->mut   5.73e-06    5.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.05e-06    4.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6216-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 1.23)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-08    0.1/Mb  (relative = 0.05)  expected NS/S ratio = 5.0
           C->(T/G)   1.71e-06    1.7/Mb  (relative = 1.16)  expected NS/S ratio = 2.8
             A->mut   2.73e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.47e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-67-6217-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.60)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.80)  expected NS/S ratio = 5.0
           C->(T/G)   3.22e-06    3.2/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   2.59e-06    2.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-71-6725-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 6.88)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.77e-06    1.8/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
           C->(T/G)   2.30e-06    2.3/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4658-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.13)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.94e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
           C->(T/G)   8.60e-06    8.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   2.12e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.64e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4659-TP
            *CpG->A   1.09e-05   10.9/Mb  (relative = 1.59)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-06    5.2/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   3.55e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.83e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4662-TP
            *CpG->A   1.21e-05   12.1/Mb  (relative = 1.68)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.71e-06    4.7/Mb  (relative = 0.66)  expected NS/S ratio = 5.0
           C->(T/G)   4.07e-06    4.1/Mb  (relative = 0.57)  expected NS/S ratio = 2.8
             A->mut   3.00e-06    3.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.20e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4666-TP
            *CpG->A   1.81e-05   18.1/Mb  (relative = 1.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.13e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.58e-06    5.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.57e-06    4.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-05   11.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4668-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 1.30)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.07e-05   10.7/Mb  (relative = 0.74)  expected NS/S ratio = 5.0
           C->(T/G)   7.35e-06    7.4/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   4.98e-06    5.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4670-TP
            *CpG->A   1.63e-05   16.3/Mb  (relative = 1.50)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   5.19e-06    5.2/Mb  (relative = 0.48)  expected NS/S ratio = 2.8
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.81e-06    1.8/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4675-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 1.48)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   7.37e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
           C->(T/G)   1.51e-06    1.5/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   1.16e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.44e-06    2.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4676-TP
            *CpG->A   1.81e-06    1.8/Mb  (relative = 0.64)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.25e-06    1.3/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 2.8
             A->mut   1.77e-06    1.8/Mb  (relative = 0.62)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-73-4677-TP
            *CpG->A   7.25e-06    7.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.85e-06    6.9/Mb  (relative = 0.87)  expected NS/S ratio = 5.0
           C->(T/G)   4.53e-06    4.5/Mb  (relative = 0.58)  expected NS/S ratio = 2.8
             A->mut   2.39e-06    2.4/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5122-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.56)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.50e-06    2.5/Mb  (relative = 0.58)  expected NS/S ratio = 5.0
           C->(T/G)   3.68e-06    3.7/Mb  (relative = 0.86)  expected NS/S ratio = 2.8
             A->mut   1.43e-06    1.4/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.28e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5125-TP
            *CpG->A   2.42e-06    2.4/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.73e-06    2.7/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
           C->(T/G)   4.99e-06    5.0/Mb  (relative = 0.89)  expected NS/S ratio = 2.8
             A->mut   1.57e-06    1.6/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5126-TP
            *CpG->A   1.87e-05   18.7/Mb  (relative = 0.94)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.44e-05   14.4/Mb  (relative = 0.72)  expected NS/S ratio = 5.0
           C->(T/G)   1.33e-05   13.3/Mb  (relative = 0.67)  expected NS/S ratio = 2.8
             A->mut   6.21e-06    6.2/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   2.31e-06    2.3/Mb  (relative = 0.12)
        double_null   2.34e-07    0.2/Mb  (relative = 0.01)
              Total   2.00e-05   20.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5146-TP
            *CpG->A   7.85e-06    7.8/Mb  (relative = 1.39)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   4.86e-06    4.9/Mb  (relative = 0.86)  expected NS/S ratio = 5.0
           C->(T/G)   2.17e-06    2.2/Mb  (relative = 0.38)  expected NS/S ratio = 2.8
             A->mut   2.18e-06    2.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-5147-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   3.68e-07    0.4/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.8
             A->mut   6.14e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.57e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6203-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.95e-07    0.3/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   3.94e-07    0.4/Mb  (relative = 0.78)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6205-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.58e-06    1.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.8
             A->mut   8.87e-07    0.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.67e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.64e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6206-TP
            *CpG->A   3.02e-06    3.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.63)  expected NS/S ratio = 5.0
           C->(T/G)   2.23e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.8
             A->mut   8.19e-07    0.8/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.91e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6207-TP
            *CpG->A   6.04e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   6.63e-07    0.7/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
           C->(T/G)   1.90e-06    1.9/Mb  (relative = 0.90)  expected NS/S ratio = 2.8
             A->mut   9.56e-07    1.0/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6211-TP
            *CpG->A   1.69e-05   16.9/Mb  (relative = 1.47)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   9.06e-06    9.1/Mb  (relative = 0.79)  expected NS/S ratio = 5.0
           C->(T/G)   5.84e-06    5.8/Mb  (relative = 0.51)  expected NS/S ratio = 2.8
             A->mut   3.82e-06    3.8/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-75-6212-TP
            *CpG->A         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.47e-07    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 5.0
           C->(T/G)   9.19e-07    0.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.8
             A->mut   2.05e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.37e-07    0.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-80-5611-TP
            *CpG->A   4.83e-06    4.8/Mb  (relative = 0.73)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.21e-06    2.2/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
           C->(T/G)   5.38e-06    5.4/Mb  (relative = 0.82)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-86-6562-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.57)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.16e-07    0.5/Mb  (relative = 0.24)  expected NS/S ratio = 5.0
           C->(T/G)   2.49e-06    2.5/Mb  (relative = 1.18)  expected NS/S ratio = 2.8
             A->mut   5.46e-07    0.5/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.11e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6828-TP
            *CpG->A   2.72e-05   27.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   8.62e-06    8.6/Mb  (relative = 0.76)  expected NS/S ratio = 5.0
           C->(T/G)   6.04e-06    6.0/Mb  (relative = 0.53)  expected NS/S ratio = 2.8
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.10e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6829-TP
            *CpG->A   1.93e-05   19.3/Mb  (relative = 0.97)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.18e-05   11.8/Mb  (relative = 0.59)  expected NS/S ratio = 5.0
           C->(T/G)   1.23e-05   12.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.8
             A->mut   9.28e-06    9.3/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   2.64e-06    2.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-05   19.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6831-TP
            *CpG->A   3.62e-06    3.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   5.97e-06    6.0/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
           C->(T/G)   5.71e-06    5.7/Mb  (relative = 0.64)  expected NS/S ratio = 2.8
             A->mut   4.16e-06    4.2/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6835-TP
            *CpG->A   1.21e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 5.0
           C->(T/G)   1.64e-06    1.6/Mb  (relative = 0.54)  expected NS/S ratio = 2.8
             A->mut   1.84e-06    1.8/Mb  (relative = 0.61)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.01e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUAD-91-6836-TP
            *CpG->A   1.59e-04  159.4/Mb  (relative = 5.91)  expected NS/S ratio = 2.1
      *Cp(A/C/T)->A   2.17e-05   21.7/Mb  (relative = 0.81)  expected NS/S ratio = 5.0
           C->(T/G)   7.81e-06    7.8/Mb  (relative = 0.29)  expected NS/S ratio = 2.8
             A->mut   3.28e-06    3.3/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   2.68e-06    2.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-05   27.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 200: processing genes 18005 - 18094
Calculating significance of each gene.
Using projection method.
18005	ZNF799	1
18006	ZNF8	7.056760e-02
18007	ZNF80	3.578549e-01
18008	ZNF800	1.414581e-01
18009	ZNF804A	1.763412e-07
18010	ZNF804B	2.027927e-03
18011	ZNF805	8.471928e-01
18012	ZNF808	1
18013	ZNF81	5.690220e-01
18014	ZNF813	1.076543e-01
18015	ZNF814	5.197608e-01
18016	ZNF816A	7.471286e-01
18017	ZNF821	9.440367e-01
18018	ZNF823	8.407571e-01
18019	ZNF827	1
18020	ZNF828	6.492939e-01
18021	ZNF829	4.277692e-01
18022	ZNF83	6.221587e-01
18023	ZNF830	1
18024	ZNF831	1.618561e-01
18025	ZNF835	1
18026	ZNF836	7.055447e-01
18027	ZNF839	1
18028	ZNF841	7.769146e-01
18029	ZNF844	8.211647e-01
18030	ZNF845	9.370225e-01
18031	ZNF846	1
18032	ZNF85	4.763447e-02
18033	ZNF860	1
18034	ZNF862	9.982592e-01
18035	ZNF878	6.289804e-01
18036	ZNF880	1
18037	ZNF883	4.499760e-01
18038	ZNF90	7.814191e-01
18039	ZNF91	1.005944e-01
18040	ZNF92	6.228011e-01
18041	ZNF93	8.225649e-01
18042	ZNF98	1
18043	ZNF99	9.143097e-01
18044	ZNFX1	1
18045	ZNHIT1	1
18046	ZNHIT2	7.520746e-01
18047	ZNHIT3	5.778396e-01
18048	ZNHIT6	1
18049	ZNRD1	1
18050	ZNRF1	1
18051	ZNRF2	1
18052	ZNRF3	9.754299e-01
18053	ZNRF4	1
18054	ZP1	4.194182e-01
18055	ZP2	1
18056	ZP3	7.382205e-01
18057	ZP4	1
18058	ZPBP	1
18059	ZPBP2	6.877003e-01
18060	ZPLD1	4.641398e-02
18061	ZRANB1	9.669464e-01
18062	ZRANB2	6.715938e-01
18063	ZRANB3	4.001134e-01
18064	ZRSR2	1
18065	ZSCAN1	5.321442e-03
18066	ZSCAN10	1
18067	ZSCAN12	1
18068	ZSCAN16	1
18069	ZSCAN18	8.852473e-01
18070	ZSCAN2	9.773305e-01
18071	ZSCAN20	9.207839e-01
18072	ZSCAN21	8.582787e-01
18073	ZSCAN22	7.344326e-01
18074	ZSCAN29	8.056115e-01
18075	ZSCAN4	7.395377e-03
18076	ZSCAN5A	5.438819e-01
18077	ZSCAN5B	4.624322e-02
18078	ZSWIM1	9.278060e-01
18079	ZSWIM2	3.270995e-05
18080	ZSWIM3	1
18081	ZSWIM4	8.957423e-01
18082	ZSWIM5	9.765342e-01
18083	ZSWIM7	1
18084	ZUFSP	1
18085	ZW10	4.970328e-01
18086	ZWILCH	7.809152e-01
18087	ZWINT	1.669749e-03
18088	ZXDA	8.649053e-01
18089	ZXDB	1
18090	ZXDC	8.144445e-01
18091	ZYG11B	4.620235e-01
18092	ZYX	1
18093	ZZEF1	9.997186e-01
18094	ZZZ3	2.978202e-01
Done

Running MutSig 2:
Scatter job 200: processing genes 18005 - 18094
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF831
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
Cons ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
KS ci ratio: 2.574045e-02	ci left: 6.896003e-01	ci right 7.076838e-01	k: 6987	n:10000
ZNF831   10000 perm   3 sec   (3681 perm/sec)   p_kst 6.987000e-01   p_cons 1.911000e-01   p_joint 4.037000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF831.45_5054_10000_0.6987_0.1911_0.4037.png
                gene_name: ZNF831
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
ZNF804A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
Cons ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
KS ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
ZNF804A   10000 perm   3 sec   (3883 perm/sec)   p_kst 8.656000e-01   p_cons 5.330000e-01   p_joint 9.292000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804A.44_3646_10000_0.8656_0.533_0.9292.png
                gene_name: ZNF804A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 3 percent done.
ZNF804B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
ZNF804B   10000 perm   2 sec   (4363 perm/sec)   p_kst 6.919000e-01   p_cons 1.951000e-01   p_joint 5.636000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804B.26_4064_10000_0.6919_0.1951_0.5636.png
                gene_name: ZNF804B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 5 percent done.
ZP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
Cons ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
ZP4   10000 perm   2 sec   (5088 perm/sec)   p_kst 3.253000e-01   p_cons 1.400000e-02   p_joint 9.160000e-02

Joint ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
Cons ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
KS ci ratio: 3.969315e-02	ci left: 3.212451e-01	ci right 3.343050e-01	k: 6555	n:20000
ZP4   20000 perm   4 sec   (4701 perm/sec)   p_kst 3.277500e-01   p_cons 1.345000e-02   p_joint 2.850000e-02

Joint ci ratio: 1.335074e-01	ci left: 2.606559e-02	ci right 2.982657e-02	k: 837	n:30000
Cons ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
KS ci ratio: 3.263122e-02	ci left: 3.194681e-01	ci right 3.300992e-01	k: 9743	n:30000
ZP4   30000 perm   7 sec   (4562 perm/sec)   p_kst 3.247667e-01   p_cons 1.340000e-02   p_joint 2.790000e-02

Joint ci ratio: 9.611280e-02	ci left: 3.800290e-02	ci right 4.186425e-02	k: 1596	n:40000
Cons ci ratio: 1.577622e-01	ci left: 1.399978e-02	ci right 1.642135e-02	k: 607	n:40000
KS ci ratio: 2.827720e-02	ci left: 3.199122e-01	ci right 3.291133e-01	k: 12980	n:40000
ZP4   40000 perm   9 sec   (4474 perm/sec)   p_kst 3.245000e-01   p_cons 1.517500e-02   p_joint 3.990000e-02

Joint ci ratio: 8.459067e-02	ci left: 3.943538e-02	ci right 4.293814e-02	k: 2058	n:50000
Cons ci ratio: 1.394398e-01	ci left: 1.447405e-02	ci right 1.666272e-02	k: 777	n:50000
KS ci ratio: 2.528296e-02	ci left: 3.205560e-01	ci right 3.287844e-01	k: 16233	n:50000
ZP4   50000 perm   11 sec   (4388 perm/sec)   p_kst 3.246600e-01   p_cons 1.554000e-02   p_joint 4.116000e-02

Joint ci ratio: 7.600620e-02	ci left: 4.083425e-02	ci right 4.407686e-02	k: 2546	n:60000
Cons ci ratio: 1.278904e-01	ci left: 1.442987e-02	ci right 1.641740e-02	k: 924	n:60000
KS ci ratio: 2.305099e-02	ci left: 3.214685e-01	ci right 3.289817e-01	k: 19513	n:60000
ZP4   60000 perm   14 sec   (4311 perm/sec)   p_kst 3.252167e-01   p_cons 1.540000e-02   p_joint 4.243333e-02

Joint ci ratio: 6.910859e-02	ci left: 4.242220e-02	ci right 4.547289e-02	k: 3075	n:70000
Cons ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
KS ci ratio: 2.110051e-02	ci left: 3.267303e-01	ci right 3.337123e-01	k: 23115	n:70000
ZP4   70000 perm   17 sec   (4242 perm/sec)   p_kst 3.302143e-01   p_cons 1.545714e-02   p_joint 4.392857e-02

Joint ci ratio: 6.951869e-02	ci left: 3.689457e-02	ci right 3.956405e-02	k: 3057	n:80000
Cons ci ratio: 1.112308e-01	ci left: 1.443649e-02	ci right 1.614892e-02	k: 1222	n:80000
KS ci ratio: 1.973342e-02	ci left: 3.270533e-01	ci right 3.335840e-01	k: 26425	n:80000
ZP4   80000 perm   19 sec   (4177 perm/sec)   p_kst 3.303125e-01   p_cons 1.527500e-02   p_joint 3.821250e-02

Joint ci ratio: 6.403154e-02	ci left: 3.869622e-02	ci right 4.126687e-02	k: 3597	n:90000
Cons ci ratio: 1.048259e-01	ci left: 1.449736e-02	ci right 1.611188e-02	k: 1376	n:90000
KS ci ratio: 1.864147e-02	ci left: 3.263737e-01	ci right 3.325261e-01	k: 29650	n:90000
ZP4   90000 perm   22 sec   (4105 perm/sec)   p_kst 3.294444e-01   p_cons 1.528889e-02   p_joint 3.996667e-02

Joint ci ratio: 6.146001e-02	ci left: 3.788731e-02	ci right 4.029952e-02	k: 3908	n:100000
Cons ci ratio: 9.964527e-02	ci left: 1.448004e-02	ci right 1.600826e-02	k: 1523	n:100000
KS ci ratio: 1.768788e-02	ci left: 3.264570e-01	ci right 3.322929e-01	k: 32937	n:100000
ZP4   100000 perm   25 sec   (4038 perm/sec)   p_kst 3.293700e-01   p_cons 1.523000e-02   p_joint 3.908000e-02

Outputting figure to mutsig2_images.part000000000200/ZP4.25_1671_100000_0.32937_0.01523_0.03908.png
                gene_name: ZP4
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 6 percent done.
ZNF99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
Cons ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
ZNF99   10000 perm   2 sec   (4854 perm/sec)   p_kst 1.773000e-01   p_cons 7.180000e-01   p_joint 3.374000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF99.18_3141_10000_0.1773_0.718_0.3374.png
                gene_name: ZNF99
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 8 percent done.
ZSWIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
Cons ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
KS ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
ZSWIM2   10000 perm   2 sec   (5676 perm/sec)   p_kst 2.998000e-01   p_cons 6.531000e-01   p_joint 4.517000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM2.17_1938_10000_0.2998_0.6531_0.4517.png
                gene_name: ZSWIM2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
ZNF98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
Cons ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
KS ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
ZNF98   10000 perm   2 sec   (5670 perm/sec)   p_kst 6.366000e-01   p_cons 8.983000e-01   p_joint 7.633000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF98.11_1735_10000_0.6366_0.8983_0.7633.png
                gene_name: ZNF98
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 11 percent done.
ZNF91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
Cons ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KS ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
ZNF91   10000 perm   2 sec   (5217 perm/sec)   p_kst 4.266000e-01   p_cons 4.192000e-01   p_joint 5.207000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF91.10_3592_10000_0.4266_0.4192_0.5207.png
                gene_name: ZNF91
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
ZSCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
ZSCAN1   10000 perm   2 sec   (5350 perm/sec)   p_kst 2.431000e-01   p_cons 1.651000e-01   p_joint 1.923000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN1.10_1243_10000_0.2431_0.1651_0.1923.png
                gene_name: ZSCAN1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 14 percent done.
ZSCAN5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
Cons ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
ZSCAN5B   10000 perm   2 sec   (5638 perm/sec)   p_kst 3.956000e-01   p_cons 9.470000e-02   p_joint 1.672000e-01

Joint ci ratio: 5.114245e-02	ci left: 2.212096e-01	ci right 2.328699e-01	k: 4540	n:20000
Cons ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
KS ci ratio: 3.421515e-02	ci left: 3.894119e-01	ci right 4.030182e-01	k: 7924	n:20000
ZSCAN5B   20000 perm   4 sec   (5128 perm/sec)   p_kst 3.962000e-01   p_cons 1.059500e-01   p_joint 2.270000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN5B.10_1504_20000_0.3962_0.10595_0.227.png
                gene_name: ZSCAN5B
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 15 percent done.
ZZEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
Cons ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
KS ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
ZZEF1   10000 perm   3 sec   (3680 perm/sec)   p_kst 1.840000e-01   p_cons 9.368000e-01   p_joint 3.820000e-01

Outputting figure to mutsig2_images.part000000000200/ZZEF1.10_9106_10000_0.184_0.9368_0.382.png
                gene_name: ZZEF1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
ZNF813
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
Cons ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
ZNF813   10000 perm   2 sec   (5573 perm/sec)   p_kst 6.040000e-02   p_cons 5.617000e-01   p_joint 1.249000e-01

Joint ci ratio: 7.662953e-02	ci left: 1.112489e-01	ci right 1.201632e-01	k: 2313	n:20000
Cons ci ratio: 2.435223e-02	ci left: 5.574442e-01	ci right 5.712371e-01	k: 11287	n:20000
KS ci ratio: 1.123232e-01	ci left: 5.416716e-02	ci right 6.066226e-02	k: 1147	n:20000
ZNF813   20000 perm   4 sec   (5096 perm/sec)   p_kst 5.735000e-02   p_cons 5.643500e-01   p_joint 1.156500e-01

Joint ci ratio: 5.948014e-02	ci left: 1.226923e-01	ci right 1.302469e-01	k: 3793	n:30000
Cons ci ratio: 1.979982e-02	ci left: 5.608027e-01	ci right 5.720511e-01	k: 16993	n:30000
KS ci ratio: 9.222460e-02	ci left: 5.417457e-02	ci right 5.944500e-02	k: 1703	n:30000
ZNF813   30000 perm   6 sec   (4915 perm/sec)   p_kst 5.676667e-02   p_cons 5.664333e-01   p_joint 1.264333e-01

Outputting figure to mutsig2_images.part000000000200/ZNF813.9_1866_30000_0.056767_0.56643_0.12643.png
                gene_name: ZNF813
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 18 percent done.
ZPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
Cons ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
ZPLD1   10000 perm   2 sec   (5679 perm/sec)   p_kst 4.935000e-01   p_cons 7.121000e-01   p_joint 9.396000e-01

Outputting figure to mutsig2_images.part000000000200/ZPLD1.8_1340_10000_0.4935_0.7121_0.9396.png
                gene_name: ZPLD1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 20 percent done.
ZNF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
Cons ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
KS ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
ZNF8   10000 perm   2 sec   (5566 perm/sec)   p_kst 3.853000e-01   p_cons 4.809000e-01   p_joint 5.428000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF8.7_1744_10000_0.3853_0.4809_0.5428.png
                gene_name: ZNF8
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 22 percent done.
ZSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
Cons ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
KS ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
ZSCAN4   10000 perm   2 sec   (5945 perm/sec)   p_kst 1.047000e-01   p_cons 5.775000e-01   p_joint 1.844000e-01

Joint ci ratio: 5.888196e-02	ci left: 1.760316e-01	ci right 1.867612e-01	k: 3627	n:20000
Cons ci ratio: 2.342914e-02	ci left: 5.763805e-01	ci right 5.900953e-01	k: 11665	n:20000
KS ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
ZSCAN4   20000 perm   4 sec   (5467 perm/sec)   p_kst 1.113500e-01   p_cons 5.832500e-01   p_joint 1.813500e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN4.7_1314_20000_0.11135_0.58325_0.18135.png
                gene_name: ZSCAN4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 23 percent done.
ZWINT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
Cons ci ratio: 2.495430e-02	ci left: 7.026103e-01	ci right 7.204663e-01	k: 7116	n:10000
KS ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
ZWINT   10000 perm   2 sec   (6474 perm/sec)   p_kst 6.015000e-01   p_cons 7.116000e-01   p_joint 7.558000e-01

Outputting figure to mutsig2_images.part000000000200/ZWINT.7_866_10000_0.6015_0.7116_0.7558.png
                gene_name: ZWINT
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 25 percent done.
ZZZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
Cons ci ratio: 1.881661e-03	ci left: 9.966711e-01	ci right 9.986208e-01	k: 9978	n:10000
KS ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
ZZZ3   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.750000e-02   p_cons 9.978000e-01   p_joint 1.207000e-01

Joint ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
Cons ci ratio: 1.176913e-03	ci left: 9.975670e-01	ci right 9.987808e-01	k: 19965	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
ZZZ3   20000 perm   4 sec   (5133 perm/sec)   p_kst 7.530000e-02   p_cons 9.982500e-01   p_joint 1.628500e-01

Outputting figure to mutsig2_images.part000000000200/ZZZ3.7_2756_20000_0.0753_0.99825_0.16285.png
                gene_name: ZZZ3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 26 percent done.
ZNF80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.960686e-02	ci left: 7.919218e-01	ci right 8.077031e-01	k: 7999	n:10000
Cons ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
KS ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
ZNF80   10000 perm   2 sec   (6654 perm/sec)   p_kst 6.700000e-01   p_cons 8.478000e-01   p_joint 7.999000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF80.6_826_10000_0.67_0.8478_0.7999.png
                gene_name: ZNF80
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 28 percent done.
ZNF800
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
Cons ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
KS ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
ZNF800   10000 perm   2 sec   (5330 perm/sec)   p_kst 2.149000e-01   p_cons 8.410000e-02   p_joint 1.043000e-01

Joint ci ratio: 6.305346e-02	ci left: 1.568193e-01	ci right 1.670792e-01	k: 3238	n:20000
Cons ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
KS ci ratio: 5.330378e-02	ci left: 2.071447e-01	ci right 2.185389e-01	k: 4256	n:20000
ZNF800   20000 perm   4 sec   (4941 perm/sec)   p_kst 2.128000e-01   p_cons 9.530000e-02   p_joint 1.619000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF800.6_2015_20000_0.2128_0.0953_0.1619.png
                gene_name: ZNF800
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 29 percent done.
ZNF835
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
ZNF835   10000 perm   2 sec   (6190 perm/sec)   p_kst 2.661000e-01   p_cons 8.100000e-03   p_joint 3.850000e-02

Joint ci ratio: 1.307624e-01	ci left: 4.018178e-02	ci right 4.585205e-02	k: 859	n:20000
Cons ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
KS ci ratio: 4.613284e-02	ci left: 2.590915e-01	ci right 2.713768e-01	k: 5304	n:20000
ZNF835   20000 perm   4 sec   (5270 perm/sec)   p_kst 2.652000e-01   p_cons 7.300000e-03   p_joint 4.295000e-02

Joint ci ratio: 1.346691e-01	ci left: 2.561418e-02	ci right 2.934475e-02	k: 823	n:30000
Cons ci ratio: 2.676344e-01	ci left: 6.150100e-03	ci right 8.080539e-03	k: 212	n:30000
KS ci ratio: 3.741934e-02	ci left: 2.627952e-01	ci right 2.728498e-01	k: 8034	n:30000
ZNF835   30000 perm   6 sec   (5185 perm/sec)   p_kst 2.678000e-01   p_cons 7.066667e-03   p_joint 2.743333e-02

Joint ci ratio: 1.024237e-01	ci left: 3.351287e-02	ci right 3.715499e-02	k: 1412	n:40000
Cons ci ratio: 2.158859e-01	ci left: 7.292263e-03	ci right 9.080242e-03	k: 326	n:40000
KS ci ratio: 3.356540e-02	ci left: 2.499882e-01	ci right 2.585475e-01	k: 10170	n:40000
ZNF835   40000 perm   8 sec   (5095 perm/sec)   p_kst 2.542500e-01   p_cons 8.150000e-03   p_joint 3.530000e-02

Joint ci ratio: 9.937633e-02	ci left: 2.867823e-02	ci right 3.169664e-02	k: 1508	n:50000
Cons ci ratio: 1.913907e-01	ci left: 7.523421e-03	ci right 9.134446e-03	k: 415	n:50000
KS ci ratio: 3.004362e-02	ci left: 2.501690e-01	ci right 2.578196e-01	k: 12699	n:50000
ZNF835   50000 perm   10 sec   (5014 perm/sec)   p_kst 2.539800e-01   p_cons 8.300000e-03   p_joint 3.016000e-02

Joint ci ratio: 9.721565e-02	ci left: 2.509925e-02	ci right 2.768017e-02	k: 1582	n:60000
Cons ci ratio: 1.735275e-01	ci left: 7.701206e-03	ci right 9.180266e-03	k: 505	n:60000
KS ci ratio: 2.737660e-02	ci left: 2.511842e-01	ci right 2.581729e-01	k: 15280	n:60000
ZNF835   60000 perm   12 sec   (4934 perm/sec)   p_kst 2.546667e-01   p_cons 8.416667e-03   p_joint 2.636667e-02

Joint ci ratio: 8.761723e-02	ci left: 2.658061e-02	ci right 2.903017e-02	k: 1945	n:70000
Cons ci ratio: 1.612533e-01	ci left: 7.696060e-03	ci right 9.059449e-03	k: 585	n:70000
KS ci ratio: 2.533421e-02	ci left: 2.516177e-01	ci right 2.580883e-01	k: 17839	n:70000
ZNF835   70000 perm   14 sec   (4855 perm/sec)   p_kst 2.548429e-01   p_cons 8.357143e-03   p_joint 2.778571e-02

Joint ci ratio: 8.582726e-02	ci left: 2.432072e-02	ci right 2.651388e-02	k: 2032	n:80000
Cons ci ratio: 1.508064e-01	ci left: 7.743103e-03	ci right 9.017935e-03	k: 669	n:80000
KS ci ratio: 2.363931e-02	ci left: 2.527668e-01	ci right 2.588259e-01	k: 20463	n:80000
ZNF835   80000 perm   17 sec   (4776 perm/sec)   p_kst 2.557875e-01   p_cons 8.362500e-03   p_joint 2.540000e-02

Joint ci ratio: 8.402639e-02	ci left: 2.261808e-02	ci right 2.461278e-02	k: 2124	n:90000
Cons ci ratio: 1.434100e-01	ci left: 7.642592e-03	ci right 8.833875e-03	k: 740	n:90000
KS ci ratio: 2.224322e-02	ci left: 2.536935e-01	ci right 2.594110e-01	k: 23089	n:90000
ZNF835   90000 perm   19 sec   (4680 perm/sec)   p_kst 2.565444e-01   p_cons 8.222222e-03   p_joint 2.360000e-02

Joint ci ratio: 7.856527e-02	ci left: 2.333485e-02	ci right 2.525288e-02	k: 2428	n:100000
Cons ci ratio: 1.365814e-01	ci left: 7.611714e-03	ci right 8.737094e-03	k: 816	n:100000
KS ci ratio: 2.112478e-02	ci left: 2.534267e-01	ci right 2.588474e-01	k: 25613	n:100000
ZNF835   100000 perm   22 sec   (4592 perm/sec)   p_kst 2.561300e-01   p_cons 8.160000e-03   p_joint 2.428000e-02

Joint ci ratio: 7.265394e-02	ci left: 2.484430e-02	ci right 2.672627e-02	k: 2835	n:110000
Cons ci ratio: 1.304230e-01	ci left: 7.613943e-03	ci right 8.684961e-03	k: 895	n:110000
KS ci ratio: 1.925967e-02	ci left: 2.709307e-01	ci right 2.762085e-01	k: 30092	n:110000
ZNF835   110000 perm   24 sec   (4509 perm/sec)   p_kst 2.735636e-01   p_cons 8.136364e-03   p_joint 2.577273e-02

Joint ci ratio: 7.161683e-02	ci left: 2.348527e-02	ci right 2.523782e-02	k: 2922	n:120000
Cons ci ratio: 1.242603e-01	ci left: 7.713656e-03	ci right 8.743655e-03	k: 986	n:120000
KS ci ratio: 1.841685e-02	ci left: 2.715360e-01	ci right 2.765916e-01	k: 32887	n:120000
ZNF835   120000 perm   27 sec   (4428 perm/sec)   p_kst 2.740583e-01   p_cons 8.216667e-03   p_joint 2.435000e-02

Joint ci ratio: 6.460694e-02	ci left: 2.664802e-02	ci right 2.843468e-02	k: 3579	n:130000
Cons ci ratio: 1.248749e-01	ci left: 7.053073e-03	ci right 7.999862e-03	k: 977	n:130000
KS ci ratio: 1.769764e-02	ci left: 2.715614e-01	ci right 2.764179e-01	k: 35618	n:130000
ZNF835   130000 perm   30 sec   (4349 perm/sec)   p_kst 2.739846e-01   p_cons 7.515385e-03   p_joint 2.753077e-02

Joint ci ratio: 6.388905e-02	ci left: 2.534846e-02	ci right 2.702839e-02	k: 3665	n:140000
Cons ci ratio: 1.193786e-01	ci left: 7.186385e-03	ci right 8.105612e-03	k: 1069	n:140000
KS ci ratio: 1.704498e-02	ci left: 2.718572e-01	ci right 2.765379e-01	k: 38387	n:140000
ZNF835   140000 perm   33 sec   (4279 perm/sec)   p_kst 2.741929e-01   p_cons 7.635714e-03   p_joint 2.617857e-02

Joint ci ratio: 6.799076e-02	ci left: 2.094236e-02	ci right 2.242288e-02	k: 3251	n:150000
Cons ci ratio: 1.154032e-01	ci left: 7.192613e-03	ci right 8.079911e-03	k: 1144	n:150000
KS ci ratio: 1.646508e-02	ci left: 2.719834e-01	ci right 2.765054e-01	k: 41136	n:150000
ZNF835   150000 perm   36 sec   (4211 perm/sec)   p_kst 2.742400e-01   p_cons 7.626667e-03   p_joint 2.167333e-02

Joint ci ratio: 6.716807e-02	ci left: 2.014316e-02	ci right 2.154927e-02	k: 3334	n:160000
Cons ci ratio: 1.122181e-01	ci left: 7.143822e-03	ci right 7.999167e-03	k: 1210	n:160000
KS ci ratio: 1.593786e-02	ci left: 2.721647e-01	ci right 2.765435e-01	k: 43896	n:160000
ZNF835   160000 perm   39 sec   (4140 perm/sec)   p_kst 2.743500e-01   p_cons 7.562500e-03   p_joint 2.083750e-02

Joint ci ratio: 6.531750e-02	ci left: 2.006895e-02	ci right 2.142982e-02	k: 3526	n:170000
Cons ci ratio: 1.086418e-01	ci left: 7.186917e-03	ci right 8.018243e-03	k: 1291	n:170000
KS ci ratio: 1.544433e-02	ci left: 2.726847e-01	ci right 2.769347e-01	k: 46717	n:170000
ZNF835   170000 perm   42 sec   (4073 perm/sec)   p_kst 2.748059e-01   p_cons 7.594118e-03   p_joint 2.074118e-02

Joint ci ratio: 6.586248e-02	ci left: 1.866394e-02	ci right 1.994049e-02	k: 3473	n:180000
Cons ci ratio: 1.060506e-01	ci left: 7.133643e-03	ci right 7.937896e-03	k: 1355	n:180000
KS ci ratio: 1.500796e-02	ci left: 2.727774e-01	ci right 2.769077e-01	k: 49471	n:180000
ZNF835   180000 perm   45 sec   (4008 perm/sec)   p_kst 2.748389e-01   p_cons 7.527778e-03   p_joint 1.929444e-02

Joint ci ratio: 6.179172e-02	ci left: 2.010077e-02	ci right 2.138759e-02	k: 3940	n:190000
Cons ci ratio: 1.031978e-01	ci left: 7.147724e-03	ci right 7.930572e-03	k: 1431	n:190000
KS ci ratio: 1.468822e-02	ci left: 2.706511e-01	ci right 2.746611e-01	k: 51804	n:190000
ZNF835   190000 perm   48 sec   (3943 perm/sec)   p_kst 2.726526e-01   p_cons 7.531579e-03   p_joint 2.073684e-02

Joint ci ratio: 6.213070e-02	ci left: 1.890832e-02	ci right 2.012567e-02	k: 3902	n:200000
Cons ci ratio: 1.004965e-01	ci left: 7.170408e-03	ci right 7.933970e-03	k: 1509	n:200000
KS ci ratio: 1.432472e-02	ci left: 2.704696e-01	ci right 2.743769e-01	k: 54484	n:200000
ZNF835   200000 perm   52 sec   (3883 perm/sec)   p_kst 2.724200e-01   p_cons 7.545000e-03   p_joint 1.951000e-02

Joint ci ratio: 6.146574e-02	ci left: 1.841566e-02	ci right 1.958815e-02	k: 3989	n:210000
Cons ci ratio: 9.787259e-02	ci left: 7.209757e-03	ci right 7.956313e-03	k: 1591	n:210000
KS ci ratio: 1.397199e-02	ci left: 2.707295e-01	ci right 2.745434e-01	k: 57253	n:210000
ZNF835   210000 perm   55 sec   (3824 perm/sec)   p_kst 2.726333e-01   p_cons 7.576190e-03   p_joint 1.899524e-02

Outputting figure to mutsig2_images.part000000000200/ZNF835.6_1686_210000_0.27263_0.0075762_0.018995.png
                gene_name: ZNF835
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0076 
      ci_cons_bounds_left: 0.0072 
     ci_cons_bounds_right: 0.0080 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 31 percent done.
ZNF85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
Cons ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
KS ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
ZNF85   10000 perm   2 sec   (5702 perm/sec)   p_kst 7.769000e-01   p_cons 2.238000e-01   p_joint 4.035000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF85.6_1804_10000_0.7769_0.2238_0.4035.png
                gene_name: ZNF85
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 32 percent done.
ZNF862
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
Cons ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
ZNF862   10000 perm   2 sec   (5083 perm/sec)   p_kst 2.031000e-01   p_cons 2.451000e-01   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF862.6_3542_10000_0.2031_0.2451_0.2128.png
                gene_name: ZNF862
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 34 percent done.
ZRANB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
Cons ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
ZRANB3   10000 perm   2 sec   (5941 perm/sec)   p_kst 8.770000e-01   p_cons 2.072000e-01   p_joint 6.967000e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB3.6_3320_10000_0.877_0.2072_0.6967.png
                gene_name: ZRANB3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 35 percent done.
ZW10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
Cons ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
ZW10   10000 perm   2 sec   (5662 perm/sec)   p_kst 5.160000e-02   p_cons 2.808000e-01   p_joint 8.940000e-02

Joint ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
Cons ci ratio: 4.538721e-02	ci left: 2.654443e-01	ci right 2.778222e-01	k: 5432	n:20000
KS ci ratio: 1.215250e-01	ci left: 4.643741e-02	ci right 5.249443e-02	k: 988	n:20000
ZW10   20000 perm   4 sec   (5099 perm/sec)   p_kst 4.940000e-02   p_cons 2.716000e-01   p_joint 6.025000e-02

Joint ci ratio: 9.303778e-02	ci left: 5.326166e-02	ci right 5.849143e-02	k: 1675	n:30000
Cons ci ratio: 3.725152e-02	ci left: 2.645513e-01	ci right 2.746267e-01	k: 8087	n:30000
KS ci ratio: 1.000621e-01	ci left: 4.622643e-02	ci right 5.112811e-02	k: 1459	n:30000
ZW10   30000 perm   6 sec   (4922 perm/sec)   p_kst 4.863333e-02   p_cons 2.695667e-01   p_joint 5.583333e-02

Joint ci ratio: 7.358237e-02	ci left: 6.380708e-02	ci right 6.870611e-02	k: 2649	n:40000
Cons ci ratio: 3.204916e-02	ci left: 2.678175e-01	ci right 2.765656e-01	k: 10887	n:40000
KS ci ratio: 8.697804e-02	ci left: 4.621928e-02	ci right 5.044660e-02	k: 1932	n:40000
ZW10   40000 perm   8 sec   (4748 perm/sec)   p_kst 4.830000e-02   p_cons 2.721750e-01   p_joint 6.622500e-02

Outputting figure to mutsig2_images.part000000000200/ZW10.6_2404_40000_0.0483_0.27218_0.066225.png
                gene_name: ZW10
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 37 percent done.
ZNF827
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
Cons ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
KS ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
ZNF827   10000 perm   2 sec   (5534 perm/sec)   p_kst 6.127000e-01   p_cons 1.362000e-01   p_joint 3.666000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF827.5_3286_10000_0.6127_0.1362_0.3666.png
                gene_name: ZNF827
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 38 percent done.
ZNF845
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
Cons ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
KS ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
ZNF845   10000 perm   2 sec   (5851 perm/sec)   p_kst 6.428000e-01   p_cons 7.109000e-01   p_joint 8.541000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF845.5_2925_10000_0.6428_0.7109_0.8541.png
                gene_name: ZNF845
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 40 percent done.
ZP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
KS ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
ZP1   10000 perm   2 sec   (5848 perm/sec)   p_kst 7.905000e-01   p_cons 7.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZP1.5_1965_10000_0.7905_0.799_1.png
                gene_name: ZP1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ZPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
Cons ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
KS ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
ZPBP   10000 perm   2 sec   (6175 perm/sec)   p_kst 3.364000e-01   p_cons 1.138000e-01   p_joint 1.643000e-01

Joint ci ratio: 5.601473e-02	ci left: 1.911609e-01	ci right 2.022274e-01	k: 3933	n:20000
Cons ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
KS ci ratio: 3.862786e-02	ci left: 3.332842e-01	ci right 3.464624e-01	k: 6797	n:20000
ZPBP   20000 perm   4 sec   (5620 perm/sec)   p_kst 3.398500e-01   p_cons 1.128500e-01   p_joint 1.966500e-01

Outputting figure to mutsig2_images.part000000000200/ZPBP.5_1088_20000_0.33985_0.11285_0.19665.png
                gene_name: ZPBP
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 43 percent done.
ZYG11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
ZYG11B   10000 perm   2 sec   (5646 perm/sec)   p_kst 4.832000e-01   p_cons 4.920000e-02   p_joint 1.461000e-01

Joint ci ratio: 5.307420e-02	ci left: 2.085805e-01	ci right 2.200027e-01	k: 4285	n:20000
Cons ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
KS ci ratio: 2.835859e-02	ci left: 4.815994e-01	ci right 4.955039e-01	k: 9771	n:20000
ZYG11B   20000 perm   4 sec   (5209 perm/sec)   p_kst 4.885500e-01   p_cons 4.410000e-02   p_joint 2.142500e-01

Joint ci ratio: 4.610104e-02	ci left: 1.897037e-01	ci right 1.986889e-01	k: 5825	n:30000
Cons ci ratio: 1.054090e-01	ci left: 4.173925e-02	ci right 4.641622e-02	k: 1321	n:30000
KS ci ratio: 2.325202e-02	ci left: 4.807957e-01	ci right 4.921403e-01	k: 14594	n:30000
ZYG11B   30000 perm   6 sec   (5010 perm/sec)   p_kst 4.864667e-01   p_cons 4.403333e-02   p_joint 1.941667e-01

Joint ci ratio: 4.953856e-02	ci left: 1.319868e-01	ci right 1.387162e-01	k: 5413	n:40000
Cons ci ratio: 9.127816e-02	ci left: 4.205968e-02	ci right 4.610684e-02	k: 1762	n:40000
KS ci ratio: 2.012367e-02	ci left: 4.818904e-01	ci right 4.917115e-01	k: 19472	n:40000
ZYG11B   40000 perm   8 sec   (4883 perm/sec)   p_kst 4.868000e-01   p_cons 4.405000e-02   p_joint 1.353250e-01

Outputting figure to mutsig2_images.part000000000200/ZYG11B.5_2291_40000_0.4868_0.04405_0.13533.png
                gene_name: ZYG11B
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
ZNF828
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
Cons ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
KS ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
ZNF828   10000 perm   2 sec   (5625 perm/sec)   p_kst 2.880000e-01   p_cons 2.278000e-01   p_joint 2.843000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF828.4_2443_10000_0.288_0.2278_0.2843.png
                gene_name: ZNF828
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 46 percent done.
ZNF836
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
Cons ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
ZNF836   10000 perm   2 sec   (5847 perm/sec)   p_kst 5.061000e-01   p_cons 7.025000e-01   p_joint 6.800000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF836.4_2821_10000_0.5061_0.7025_0.68.png
                gene_name: ZNF836
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 48 percent done.
ZNFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
Cons ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
ZNFX1   10000 perm   2 sec   (4946 perm/sec)   p_kst 7.626000e-01   p_cons 2.310000e-01   p_joint 5.309000e-01

Outputting figure to mutsig2_images.part000000000200/ZNFX1.4_5809_10000_0.7626_0.231_0.5309.png
                gene_name: ZNFX1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
ZSCAN20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
Cons ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
ZSCAN20   10000 perm   2 sec   (5489 perm/sec)   p_kst 3.035000e-01   p_cons 9.450000e-02   p_joint 2.148000e-01

Joint ci ratio: 6.372376e-02	ci left: 1.540063e-01	ci right 1.641931e-01	k: 3181	n:20000
Cons ci ratio: 8.343253e-02	ci left: 9.523778e-02	ci right 1.035791e-01	k: 1987	n:20000
KS ci ratio: 4.168460e-02	ci left: 3.001636e-01	ci right 3.129926e-01	k: 6131	n:20000
ZSCAN20   20000 perm   4 sec   (4823 perm/sec)   p_kst 3.065500e-01   p_cons 9.935000e-02   p_joint 1.590500e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN20.4_3160_20000_0.30655_0.09935_0.15905.png
                gene_name: ZSCAN20
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
ZSCAN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
Cons ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
KS ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
ZSCAN21   10000 perm   2 sec   (6639 perm/sec)   p_kst 8.020000e-01   p_cons 2.247000e-01   p_joint 6.395000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN21.4_1434_10000_0.802_0.2247_0.6395.png
                gene_name: ZSCAN21
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
ZXDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
Cons ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
ZXDC   10000 perm   2 sec   (5928 perm/sec)   p_kst 3.963000e-01   p_cons 2.975000e-01   p_joint 3.623000e-01

Outputting figure to mutsig2_images.part000000000200/ZXDC.4_2623_10000_0.3963_0.2975_0.3623.png
                gene_name: ZXDC
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 54 percent done.
ZNF808
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
Cons ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
KS ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
ZNF808   10000 perm   2 sec   (5746 perm/sec)   p_kst 1.707000e-01   p_cons 7.019000e-01   p_joint 5.300000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF808.3_2724_10000_0.1707_0.7019_0.53.png
                gene_name: ZNF808
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 55 percent done.
ZNF81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
KS ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
ZNF81   10000 perm   2 sec   (6142 perm/sec)   p_kst 2.180000e-01   p_cons 1.880000e-02   p_joint 3.930000e-02

Joint ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
Cons ci ratio: 2.030133e-01	ci left: 1.644020e-02	ci right 2.020170e-02	k: 365	n:20000
KS ci ratio: 5.163549e-02	ci left: 2.178906e-01	ci right 2.294899e-01	k: 4473	n:20000
ZNF81   20000 perm   4 sec   (5580 perm/sec)   p_kst 2.236500e-01   p_cons 1.825000e-02   p_joint 2.165000e-02

Joint ci ratio: 1.293580e-01	ci left: 2.777574e-02	ci right 3.164938e-02	k: 890	n:30000
Cons ci ratio: 1.624756e-01	ci left: 1.748515e-02	ci right 2.060898e-02	k: 570	n:30000
KS ci ratio: 4.242099e-02	ci left: 2.168446e-01	ci right 2.262761e-01	k: 6646	n:30000
ZNF81   30000 perm   6 sec   (5326 perm/sec)   p_kst 2.215333e-01   p_cons 1.900000e-02   p_joint 2.966667e-02

Joint ci ratio: 1.063901e-01	ci left: 3.107601e-02	ci right 3.459224e-02	k: 1312	n:40000
Cons ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
KS ci ratio: 3.679818e-02	ci left: 2.169169e-01	ci right 2.250737e-01	k: 8839	n:40000
ZNF81   40000 perm   8 sec   (5150 perm/sec)   p_kst 2.209750e-01   p_cons 1.927500e-02   p_joint 3.280000e-02

Joint ci ratio: 9.205061e-02	ci left: 3.338662e-02	ci right 3.662766e-02	k: 1749	n:50000
Cons ci ratio: 1.241794e-01	ci left: 1.832534e-02	ci right 2.077089e-02	k: 976	n:50000
KS ci ratio: 3.282944e-02	ci left: 2.182243e-01	ci right 2.255280e-01	k: 11093	n:50000
ZNF81   50000 perm   10 sec   (5044 perm/sec)   p_kst 2.218600e-01   p_cons 1.952000e-02   p_joint 3.498000e-02

Joint ci ratio: 9.368832e-02	ci left: 2.702021e-02	ci right 2.969234e-02	k: 1700	n:60000
Cons ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
KS ci ratio: 3.006165e-02	ci left: 2.174863e-01	ci right 2.241407e-01	k: 13248	n:60000
ZNF81   60000 perm   12 sec   (4951 perm/sec)   p_kst 2.208000e-01   p_cons 1.911667e-02   p_joint 2.833333e-02

Joint ci ratio: 7.607626e-02	ci left: 3.515092e-02	ci right 3.794481e-02	k: 2557	n:70000
Cons ci ratio: 1.057743e-01	ci left: 1.822408e-02	ci right 2.027319e-02	k: 1346	n:70000
KS ci ratio: 2.776964e-02	ci left: 2.184993e-01	ci right 2.246666e-01	k: 15510	n:70000
ZNF81   70000 perm   14 sec   (4842 perm/sec)   p_kst 2.215714e-01   p_cons 1.922857e-02   p_joint 3.652857e-02

Joint ci ratio: 6.628338e-02	ci left: 4.049738e-02	ci right 4.328597e-02	k: 3350	n:80000
Cons ci ratio: 9.211134e-02	ci left: 2.111684e-02	ci right 2.316801e-02	k: 1770	n:80000
KS ci ratio: 2.600993e-02	ci left: 2.182531e-01	ci right 2.240171e-01	k: 17690	n:80000
ZNF81   80000 perm   17 sec   (4755 perm/sec)   p_kst 2.211250e-01   p_cons 2.212500e-02   p_joint 4.187500e-02

Outputting figure to mutsig2_images.part000000000200/ZNF81.3_2002_80000_0.22112_0.022125_0.041875.png
                gene_name: ZNF81
               theta_stop: 0.092 
                    nperm: 80000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 57 percent done.
ZNF814
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
Cons ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
KS ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
ZNF814   10000 perm   2 sec   (6152 perm/sec)   p_kst 1.977000e-01   p_cons 8.414000e-01   p_joint 3.780000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF814.3_2580_10000_0.1977_0.8414_0.378.png
                gene_name: ZNF814
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 58 percent done.
ZNF816A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
Cons ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
ZNF816A   10000 perm   2 sec   (6479 perm/sec)   p_kst 2.167000e-01   p_cons 9.256000e-01   p_joint 3.787000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF816A.3_1968_10000_0.2167_0.9256_0.3787.png
                gene_name: ZNF816A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
ZNF823
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
Cons ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
KS ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
ZNF823   10000 perm   2 sec   (6259 perm/sec)   p_kst 3.204000e-01   p_cons 7.992000e-01   p_joint 4.838000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF823.3_1849_10000_0.3204_0.7992_0.4838.png
                gene_name: ZNF823
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 62 percent done.
ZNF829
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
Cons ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
ZNF829   10000 perm   2 sec   (6651 perm/sec)   p_kst 2.943000e-01   p_cons 2.903000e-01   p_joint 3.680000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF829.3_1566_10000_0.2943_0.2903_0.368.png
                gene_name: ZNF829
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 63 percent done.
ZNF841
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
Cons ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
ZNF841   10000 perm   2 sec   (6276 perm/sec)   p_kst 1.529000e-01   p_cons 6.530000e-02   p_joint 1.055000e-01

Joint ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
Cons ci ratio: 1.043556e-01	ci left: 6.245098e-02	ci right 6.937587e-02	k: 1317	n:20000
KS ci ratio: 6.559696e-02	ci left: 1.465076e-01	ci right 1.564939e-01	k: 3029	n:20000
ZNF841   20000 perm   4 sec   (5371 perm/sec)   p_kst 1.514500e-01   p_cons 6.585000e-02   p_joint 1.102000e-01

Joint ci ratio: 7.009740e-02	ci left: 9.108133e-02	ci right 9.773079e-02	k: 2831	n:30000
Cons ci ratio: 8.560127e-02	ci left: 6.252989e-02	ci right 6.815464e-02	k: 1959	n:30000
KS ci ratio: 5.276866e-02	ci left: 1.512513e-01	ci right 1.594822e-01	k: 4660	n:30000
ZNF841   30000 perm   6 sec   (5107 perm/sec)   p_kst 1.553333e-01   p_cons 6.530000e-02   p_joint 9.436667e-02

Outputting figure to mutsig2_images.part000000000200/ZNF841.3_2791_30000_0.15533_0.0653_0.094367.png
                gene_name: ZNF841
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 65 percent done.
ZSCAN29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
Cons ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
ZSCAN29   10000 perm   2 sec   (6255 perm/sec)   p_kst 9.500000e-02   p_cons 4.204000e-01   p_joint 4.919000e-01

Joint ci ratio: 3.704661e-02	ci left: 3.521982e-01	ci right 3.655428e-01	k: 7177	n:20000
Cons ci ratio: 3.265392e-02	ci left: 4.118998e-01	ci right 4.256238e-01	k: 8375	n:20000
KS ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
ZSCAN29   20000 perm   4 sec   (5519 perm/sec)   p_kst 9.310000e-02   p_cons 4.187500e-01   p_joint 3.588500e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN29.3_2579_20000_0.0931_0.41875_0.35885.png
                gene_name: ZSCAN29
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 66 percent done.
ZSCAN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
Cons ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
KS ci ratio: 1.469016e-02	ci left: 8.703006e-01	ci right 8.832791e-01	k: 8769	n:10000
ZSCAN5A   10000 perm   2 sec   (6422 perm/sec)   p_kst 8.769000e-01   p_cons 7.975000e-01   p_joint 8.936000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN5A.3_1507_10000_0.8769_0.7975_0.8936.png
                gene_name: ZSCAN5A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 68 percent done.
ZSWIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
Cons ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
KS ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
ZSWIM4   10000 perm   2 sec   (6045 perm/sec)   p_kst 5.550000e-02   p_cons 4.119000e-01   p_joint 8.350000e-02

Joint ci ratio: 9.951067e-02	ci left: 6.840617e-02	ci right 7.561886e-02	k: 1439	n:20000
Cons ci ratio: 3.346187e-02	ci left: 4.000806e-01	ci right 4.137465e-01	k: 8138	n:20000
KS ci ratio: 1.151709e-01	ci left: 5.158846e-02	ci right 5.794177e-02	k: 1094	n:20000
ZSWIM4   20000 perm   4 sec   (5400 perm/sec)   p_kst 5.470000e-02   p_cons 4.069000e-01   p_joint 7.195000e-02

Joint ci ratio: 7.965267e-02	ci left: 7.171689e-02	ci right 7.769912e-02	k: 2240	n:30000
Cons ci ratio: 2.732802e-02	ci left: 4.012338e-01	ci right 4.123842e-01	k: 12204	n:30000
KS ci ratio: 9.608113e-02	ci left: 5.003553e-02	ci right 5.511823e-02	k: 1576	n:30000
ZSWIM4   30000 perm   6 sec   (5210 perm/sec)   p_kst 5.253333e-02   p_cons 4.068000e-01   p_joint 7.466667e-02

Outputting figure to mutsig2_images.part000000000200/ZSWIM4.3_3022_30000_0.052533_0.4068_0.074667.png
                gene_name: ZSWIM4
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 69 percent done.
ZXDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
Cons ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
KS ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
ZXDA   10000 perm   1 sec   (6708 perm/sec)   p_kst 2.627000e-01   p_cons 2.253000e-01   p_joint 3.220000e-01

Outputting figure to mutsig2_images.part000000000200/ZXDA.3_2404_10000_0.2627_0.2253_0.322.png
                gene_name: ZXDA
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 71 percent done.
ZNF83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
Cons ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
ZNF83   10000 perm   1 sec   (7153 perm/sec)   p_kst 3.090000e-02   p_cons 7.351000e-01   p_joint 2.044000e-01

Joint ci ratio: 6.490417e-02	ci left: 1.492205e-01	ci right 1.592803e-01	k: 3084	n:20000
Cons ci ratio: 1.743318e-02	ci left: 7.102479e-01	ci right 7.227891e-01	k: 14331	n:20000
KS ci ratio: 1.612488e-01	ci left: 2.638175e-02	ci right 3.105661e-02	k: 573	n:20000
ZNF83   20000 perm   3 sec   (6350 perm/sec)   p_kst 2.865000e-02   p_cons 7.165500e-01   p_joint 1.542000e-01

Joint ci ratio: 4.489011e-02	ci left: 1.980971e-01	ci right 2.072272e-01	k: 6079	n:30000
Cons ci ratio: 1.430726e-02	ci left: 7.093184e-01	ci right 7.195734e-01	k: 21434	n:30000
KS ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
ZNF83   30000 perm   5 sec   (6003 perm/sec)   p_kst 2.933333e-02   p_cons 7.144667e-01   p_joint 2.026333e-01

Joint ci ratio: 3.877012e-02	ci left: 1.995885e-01	ci right 2.075046e-01	k: 8141	n:40000
Cons ci ratio: 1.241833e-02	ci left: 7.090916e-01	ci right 7.179774e-01	k: 28542	n:40000
KS ci ratio: 1.115929e-01	ci left: 2.825267e-02	ci right 3.161603e-02	k: 1196	n:40000
ZNF83   40000 perm   7 sec   (5779 perm/sec)   p_kst 2.990000e-02   p_cons 7.135500e-01   p_joint 2.035250e-01

Joint ci ratio: 3.585194e-02	ci left: 1.894891e-01	ci right 1.964266e-01	k: 9647	n:50000
Cons ci ratio: 1.110270e-02	ci left: 7.097356e-01	ci right 7.176796e-01	k: 35686	n:50000
KS ci ratio: 1.000968e-01	ci left: 2.826841e-02	ci right 3.126652e-02	k: 1487	n:50000
ZNF83   50000 perm   9 sec   (5597 perm/sec)   p_kst 2.974000e-02   p_cons 7.137200e-01   p_joint 1.929400e-01

Joint ci ratio: 2.104612e-02	ci left: 3.624930e-01	ci right 3.702199e-01	k: 21981	n:60000
Cons ci ratio: 1.014122e-02	ci left: 7.098470e-01	ci right 7.170990e-01	k: 42809	n:60000
KS ci ratio: 9.155012e-02	ci left: 2.829094e-02	ci right 3.102147e-02	k: 1778	n:60000
ZNF83   60000 perm   11 sec   (5434 perm/sec)   p_kst 2.963333e-02   p_cons 7.134833e-01   p_joint 3.663500e-01

Outputting figure to mutsig2_images.part000000000200/ZNF83.2_1555_60000_0.029633_0.71348_0.36635.png
                gene_name: ZNF83
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 72 percent done.
ZNF860
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
ZNF860   10000 perm   1 sec   (6769 perm/sec)   p_kst 6.589000e-01   p_cons 8.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF860.2_1903_10000_0.6589_0.8423_1.png
                gene_name: ZNF860
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ZNF878
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
Cons ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
KS ci ratio: 4.526275e-02	ci left: 4.187729e-01	ci right 4.382688e-01	k: 4285	n:10000
ZNF878   10000 perm   1 sec   (6712 perm/sec)   p_kst 4.285000e-01   p_cons 1.272000e-01   p_joint 8.280000e-02

Joint ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
Cons ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
KS ci ratio: 3.220199e-02	ci left: 4.186840e-01	ci right 4.324377e-01	k: 8511	n:20000
ZNF878   20000 perm   3 sec   (6014 perm/sec)   p_kst 4.255500e-01   p_cons 1.297500e-01   p_joint 1.043000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF878.2_1757_20000_0.42555_0.12975_0.1043.png
                gene_name: ZNF878
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 75 percent done.
ZNF883
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
Cons ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
ZNF883   10000 perm   1 sec   (6981 perm/sec)   p_kst 4.321000e-01   p_cons 2.845000e-01   p_joint 6.903000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF883.2_1142_10000_0.4321_0.2845_0.6903.png
                gene_name: ZNF883
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 77 percent done.
ZNF90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
Cons ci ratio: 2.134564e-02	ci left: 7.629399e-01	ci right 7.795018e-01	k: 7713	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
ZNF90   10000 perm   1 sec   (6884 perm/sec)   p_kst 3.550000e-01   p_cons 7.713000e-01   p_joint 5.001000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF90.2_1822_10000_0.355_0.7713_0.5001.png
                gene_name: ZNF90
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 78 percent done.
ZNF92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
Cons ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
KS ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
ZNF92   10000 perm   2 sec   (6583 perm/sec)   p_kst 7.631000e-01   p_cons 2.724000e-01   p_joint 9.699000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF92.2_1777_10000_0.7631_0.2724_0.9699.png
                gene_name: ZNF92
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 80 percent done.
ZNF93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
ZNF93   10000 perm   1 sec   (6768 perm/sec)   p_kst 9.055000e-01   p_cons 5.538000e-01   p_joint 9.918000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF93.2_1879_10000_0.9055_0.5538_0.9918.png
                gene_name: ZNF93
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 82 percent done.
ZNRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
KS ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
ZNRF3   10000 perm   2 sec   (6395 perm/sec)   p_kst 3.142000e-01   p_cons 7.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNRF3.2_2543_10000_0.3142_0.7011_1.png
                gene_name: ZNRF3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
Cons ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
KS ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
ZNRF4   10000 perm   1 sec   (6926 perm/sec)   p_kst 9.322000e-01   p_cons 3.397000e-01   p_joint 5.686000e-01

Outputting figure to mutsig2_images.part000000000200/ZNRF4.2_1294_10000_0.9322_0.3397_0.5686.png
                gene_name: ZNRF4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 85 percent done.
ZP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 1.280039e-02	ci left: 8.977499e-01	ci right 9.094138e-01	k: 9037	n:10000
ZP2   10000 perm   2 sec   (6622 perm/sec)   p_kst 9.037000e-01   p_cons 9.480000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZP2.2_2314_10000_0.9037_0.948_1.png
                gene_name: ZP2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
Cons ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
KS ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
ZP3   10000 perm   1 sec   (7250 perm/sec)   p_kst 2.957000e-01   p_cons 7.699000e-01   p_joint 9.904000e-01

Outputting figure to mutsig2_images.part000000000200/ZP3.2_1307_10000_0.2957_0.7699_0.9904.png
                gene_name: ZP3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
ZRANB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
Cons ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
KS ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
ZRANB2   10000 perm   1 sec   (7431 perm/sec)   p_kst 8.912000e-01   p_cons 4.790000e-01   p_joint 9.222000e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB2.2_1071_10000_0.8912_0.479_0.9222.png
                gene_name: ZRANB2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
ZSCAN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
Cons ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
KS ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
ZSCAN18   10000 perm   1 sec   (6930 perm/sec)   p_kst 1.822000e-01   p_cons 1.999000e-01   p_joint 1.787000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN18.2_1729_10000_0.1822_0.1999_0.1787.png
                gene_name: ZSCAN18
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
ZSCAN22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
Cons ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
KS ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
ZSCAN22   10000 perm   1 sec   (6901 perm/sec)   p_kst 1.504000e-01   p_cons 9.249000e-01   p_joint 5.797000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN22.2_1484_10000_0.1504_0.9249_0.5797.png
                gene_name: ZSCAN22
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 92 percent done.
ZSWIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103812e-02	ci left: 9.213133e-01	ci right 9.316366e-01	k: 9266	n:10000
Cons ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
ZSWIM3   10000 perm   1 sec   (6765 perm/sec)   p_kst 1.302000e-01   p_cons 7.768000e-01   p_joint 9.266000e-01

Joint ci ratio: 2.026310e-02	ci left: 6.450504e-01	ci right 6.583054e-01	k: 13034	n:20000
Cons ci ratio: 1.414047e-02	ci left: 7.878225e-01	ci right 7.990921e-01	k: 15870	n:20000
KS ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
ZSWIM3   20000 perm   3 sec   (6067 perm/sec)   p_kst 1.280500e-01   p_cons 7.935000e-01   p_joint 6.517000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM3.2_2099_20000_0.12805_0.7935_0.6517.png
                gene_name: ZSWIM3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 94 percent done.
ZSWIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
Cons ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
ZSWIM5   10000 perm   2 sec   (6216 perm/sec)   p_kst 7.950000e-02   p_cons 1.186000e-01   p_joint 1.980000e-02

Joint ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
Cons ci ratio: 6.514151e-02	ci left: 1.482832e-01	ci right 1.583178e-01	k: 3065	n:20000
KS ci ratio: 9.374186e-02	ci left: 7.661884e-02	ci right 8.420368e-02	k: 1607	n:20000
ZSWIM5   20000 perm   4 sec   (5523 perm/sec)   p_kst 8.035000e-02   p_cons 1.532500e-01   p_joint 3.045000e-02

Joint ci ratio: 1.059551e-01	ci left: 4.131689e-02	ci right 4.597201e-02	k: 1308	n:30000
Cons ci ratio: 5.335950e-02	ci left: 1.483831e-01	ci right 1.565510e-01	k: 4573	n:30000
KS ci ratio: 7.570730e-02	ci left: 7.891924e-02	ci right 8.516198e-02	k: 2460	n:30000
ZSWIM5   30000 perm   6 sec   (5286 perm/sec)   p_kst 8.200000e-02   p_cons 1.524333e-01   p_joint 4.360000e-02

Joint ci ratio: 1.004506e-01	ci left: 3.482981e-02	ci right 3.853785e-02	k: 1466	n:40000
Cons ci ratio: 4.651567e-02	ci left: 1.472565e-01	ci right 1.542943e-01	k: 6030	n:40000
KS ci ratio: 6.537315e-02	ci left: 7.977245e-02	ci right 8.518835e-02	k: 3298	n:40000
ZSWIM5   40000 perm   8 sec   (5092 perm/sec)   p_kst 8.245000e-02   p_cons 1.507500e-01   p_joint 3.665000e-02

Joint ci ratio: 8.958634e-02	ci left: 3.522541e-02	ci right 3.854864e-02	k: 1843	n:50000
Cons ci ratio: 4.143922e-02	ci left: 1.486453e-01	ci right 1.549552e-01	k: 7589	n:50000
KS ci ratio: 5.813237e-02	ci left: 8.093157e-02	ci right 8.579693e-02	k: 4167	n:50000
ZSWIM5   50000 perm   10 sec   (4975 perm/sec)   p_kst 8.334000e-02   p_cons 1.517800e-01   p_joint 3.686000e-02

Outputting figure to mutsig2_images.part000000000200/ZSWIM5.2_3614_50000_0.08334_0.15178_0.03686.png
                gene_name: ZSWIM5
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 95 percent done.
ZUFSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
Cons ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
ZUFSP   10000 perm   1 sec   (6779 perm/sec)   p_kst 1.500000e-03   p_cons 1.321000e-01   p_joint 4.000000e-04

Joint ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
Cons ci ratio: 6.955317e-02	ci left: 1.322626e-01	ci right 1.418432e-01	k: 2740	n:20000
KS ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
ZUFSP   20000 perm   3 sec   (5948 perm/sec)   p_kst 1.800000e-03   p_cons 1.370000e-01   p_joint 8.000000e-04

Joint ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
Cons ci ratio: 5.705992e-02	ci left: 1.320410e-01	ci right 1.398297e-01	k: 4077	n:30000
KS ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
ZUFSP   30000 perm   5 sec   (5676 perm/sec)   p_kst 2.033333e-03   p_cons 1.359000e-01   p_joint 2.033333e-03

Joint ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
Cons ci ratio: 4.943828e-02	ci left: 1.324568e-01	ci right 1.391961e-01	k: 5432	n:40000
KS ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
ZUFSP   40000 perm   7 sec   (5524 perm/sec)   p_kst 1.875000e-03   p_cons 1.358000e-01   p_joint 1.875000e-03

Joint ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
Cons ci ratio: 4.429925e-02	ci left: 1.323924e-01	ci right 1.384100e-01	k: 6769	n:50000
KS ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
ZUFSP   50000 perm   9 sec   (5399 perm/sec)   p_kst 2.060000e-03   p_cons 1.353800e-01   p_joint 2.060000e-03

Joint ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
Cons ci ratio: 4.057540e-02	ci left: 1.318785e-01	ci right 1.373569e-01	k: 8076	n:60000
KS ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
ZUFSP   60000 perm   11 sec   (5298 perm/sec)   p_kst 1.950000e-03   p_cons 1.346000e-01   p_joint 1.950000e-03

Joint ci ratio: 3.448161e-01	ci left: 1.525754e-03	ci right 2.173802e-03	k: 128	n:70000
Cons ci ratio: 3.738505e-02	ci left: 1.331993e-01	ci right 1.382880e-01	k: 9501	n:70000
KS ci ratio: 3.448161e-01	ci left: 1.525754e-03	ci right 2.173802e-03	k: 128	n:70000
ZUFSP   70000 perm   13 sec   (5189 perm/sec)   p_kst 1.828571e-03   p_cons 1.357286e-01   p_joint 1.828571e-03

Joint ci ratio: 3.252411e-01	ci left: 1.518222e-03	ci right 2.118831e-03	k: 144	n:80000
Cons ci ratio: 3.509295e-02	ci left: 1.325522e-01	ci right 1.372993e-01	k: 10793	n:80000
KS ci ratio: 3.252411e-01	ci left: 1.518222e-03	ci right 2.118831e-03	k: 144	n:80000
ZUFSP   80000 perm   16 sec   (5086 perm/sec)   p_kst 1.800000e-03   p_cons 1.349125e-01   p_joint 1.800000e-03

Joint ci ratio: 3.039686e-01	ci left: 1.564468e-03	ci right 2.135075e-03	k: 165	n:90000
Cons ci ratio: 3.296876e-02	ci left: 1.335129e-01	ci right 1.379995e-01	k: 12217	n:90000
KS ci ratio: 3.039686e-01	ci left: 1.564468e-03	ci right 2.135075e-03	k: 165	n:90000
ZUFSP   90000 perm   18 sec   (4987 perm/sec)   p_kst 1.833333e-03   p_cons 1.357444e-01   p_joint 1.833333e-03

Joint ci ratio: 2.856251e-01	ci left: 1.611773e-03	ci right 2.157768e-03	k: 187	n:100000
Cons ci ratio: 3.122180e-02	ci left: 1.340399e-01	ci right 1.383012e-01	k: 13616	n:100000
KS ci ratio: 2.856251e-01	ci left: 1.611773e-03	ci right 2.157768e-03	k: 187	n:100000
ZUFSP   100000 perm   20 sec   (4886 perm/sec)   p_kst 1.870000e-03   p_cons 1.361600e-01   p_joint 1.870000e-03

Joint ci ratio: 2.696038e-01	ci left: 1.659801e-03	ci right 2.185199e-03	k: 210	n:110000
Cons ci ratio: 2.977194e-02	ci left: 1.341149e-01	ci right 1.381771e-01	k: 14975	n:110000
KS ci ratio: 2.696038e-01	ci left: 1.659801e-03	ci right 2.185199e-03	k: 210	n:110000
ZUFSP   110000 perm   23 sec   (4807 perm/sec)   p_kst 1.909091e-03   p_cons 1.361364e-01   p_joint 1.909091e-03

Joint ci ratio: 2.549182e-01	ci left: 1.716138e-03	ci right 2.225080e-03	k: 235	n:120000
Cons ci ratio: 2.856568e-02	ci left: 1.337007e-01	ci right 1.375836e-01	k: 16276	n:120000
KS ci ratio: 2.549182e-01	ci left: 1.716138e-03	ci right 2.225080e-03	k: 235	n:120000
ZUFSP   120000 perm   25 sec   (4729 perm/sec)   p_kst 1.958333e-03   p_cons 1.356333e-01   p_joint 1.958333e-03

Joint ci ratio: 2.438053e-01	ci left: 1.742790e-03	ci right 2.233696e-03	k: 257	n:130000
Cons ci ratio: 2.741303e-02	ci left: 1.340491e-01	ci right 1.377825e-01	k: 17668	n:130000
KS ci ratio: 2.438053e-01	ci left: 1.742790e-03	ci right 2.233696e-03	k: 257	n:130000
ZUFSP   130000 perm   28 sec   (4649 perm/sec)   p_kst 1.976923e-03   p_cons 1.359077e-01   p_joint 1.976923e-03

Joint ci ratio: 2.357227e-01	ci left: 1.739154e-03	ci right 2.210427e-03	k: 275	n:140000
Cons ci ratio: 2.641920e-02	ci left: 1.340876e-01	ci right 1.376846e-01	k: 19023	n:140000
KS ci ratio: 2.357227e-01	ci left: 1.739154e-03	ci right 2.210427e-03	k: 275	n:140000
ZUFSP   140000 perm   31 sec   (4530 perm/sec)   p_kst 1.964286e-03   p_cons 1.358786e-01   p_joint 1.964286e-03

Joint ci ratio: 2.295707e-01	ci left: 1.717380e-03	ci right 2.168886e-03	k: 290	n:150000
Cons ci ratio: 2.554939e-02	ci left: 1.339109e-01	ci right 1.373832e-01	k: 20346	n:150000
KS ci ratio: 2.295707e-01	ci left: 1.717380e-03	ci right 2.168886e-03	k: 290	n:150000
ZUFSP   150000 perm   34 sec   (4460 perm/sec)   p_kst 1.933333e-03   p_cons 1.356400e-01   p_joint 1.933333e-03

Joint ci ratio: 2.217091e-01	ci left: 1.733879e-03	ci right 2.171983e-03	k: 311	n:160000
Cons ci ratio: 2.472522e-02	ci left: 1.340876e-01	ci right 1.374506e-01	k: 21722	n:160000
KS ci ratio: 2.217091e-01	ci left: 1.733879e-03	ci right 2.171983e-03	k: 311	n:160000
ZUFSP   160000 perm   36 sec   (4400 perm/sec)   p_kst 1.943750e-03   p_cons 1.357625e-01   p_joint 1.943750e-03

Joint ci ratio: 2.139607e-01	ci left: 1.759803e-03	ci right 2.186879e-03	k: 334	n:170000
Cons ci ratio: 2.395439e-02	ci left: 1.344557e-01	ci right 1.377214e-01	k: 23134	n:170000
KS ci ratio: 2.139607e-01	ci left: 1.759803e-03	ci right 2.186879e-03	k: 334	n:170000
ZUFSP   170000 perm   39 sec   (4332 perm/sec)   p_kst 1.964706e-03   p_cons 1.360824e-01   p_joint 1.964706e-03

Joint ci ratio: 2.096287e-01	ci left: 1.735686e-03	ci right 2.147286e-03	k: 348	n:180000
Cons ci ratio: 2.327063e-02	ci left: 1.345909e-01	ci right 1.377653e-01	k: 24511	n:180000
KS ci ratio: 2.096287e-01	ci left: 1.735686e-03	ci right 2.147286e-03	k: 348	n:180000
ZUFSP   180000 perm   42 sec   (4267 perm/sec)   p_kst 1.933333e-03   p_cons 1.361722e-01   p_joint 1.933333e-03

Joint ci ratio: 2.030429e-01	ci left: 1.759136e-03	ci right 2.161566e-03	k: 371	n:190000
Cons ci ratio: 2.266659e-02	ci left: 1.344616e-01	ci right 1.375495e-01	k: 25840	n:190000
KS ci ratio: 2.030429e-01	ci left: 1.759136e-03	ci right 2.161566e-03	k: 371	n:190000
ZUFSP   190000 perm   45 sec   (4205 perm/sec)   p_kst 1.952632e-03   p_cons 1.360000e-01   p_joint 1.952632e-03

Joint ci ratio: 1.977953e-01	ci left: 1.766162e-03	ci right 2.158498e-03	k: 391	n:200000
Cons ci ratio: 2.207860e-02	ci left: 1.346498e-01	ci right 1.376608e-01	k: 27230	n:200000
KS ci ratio: 1.977953e-01	ci left: 1.766162e-03	ci right 2.158498e-03	k: 391	n:200000
ZUFSP   200000 perm   48 sec   (4145 perm/sec)   p_kst 1.955000e-03   p_cons 1.361500e-01   p_joint 1.955000e-03

Joint ci ratio: 1.931696e-01	ci left: 1.768108e-03	ci right 2.150611e-03	k: 410	n:210000
Cons ci ratio: 2.155853e-02	ci left: 1.345555e-01	ci right 1.374926e-01	k: 28564	n:210000
KS ci ratio: 1.931696e-01	ci left: 1.768108e-03	ci right 2.150611e-03	k: 410	n:210000
ZUFSP   210000 perm   51 sec   (4086 perm/sec)   p_kst 1.952381e-03   p_cons 1.360190e-01   p_joint 1.952381e-03

Joint ci ratio: 1.886343e-01	ci left: 1.774304e-03	ci right 2.148104e-03	k: 430	n:220000
Cons ci ratio: 2.103572e-02	ci left: 1.348914e-01	ci right 1.377636e-01	k: 29991	n:220000
KS ci ratio: 1.886343e-01	ci left: 1.774304e-03	ci right 2.148104e-03	k: 430	n:220000
ZUFSP   220000 perm   55 sec   (4006 perm/sec)   p_kst 1.954545e-03   p_cons 1.363227e-01   p_joint 1.954545e-03

Joint ci ratio: 1.835902e-01	ci left: 1.796649e-03	ci right 2.163909e-03	k: 454	n:230000
Cons ci ratio: 2.059550e-02	ci left: 1.346708e-01	ci right 1.374775e-01	k: 31296	n:230000
KS ci ratio: 1.835902e-01	ci left: 1.796649e-03	ci right 2.163909e-03	k: 454	n:230000
ZUFSP   230000 perm   58 sec   (3951 perm/sec)   p_kst 1.973913e-03   p_cons 1.360696e-01   p_joint 1.973913e-03

Joint ci ratio: 1.794943e-01	ci left: 1.805314e-03	ci right 2.165217e-03	k: 475	n:240000
Cons ci ratio: 2.018037e-02	ci left: 1.344857e-01	ci right 1.372314e-01	k: 32605	n:240000
KS ci ratio: 1.794943e-01	ci left: 1.805314e-03	ci right 2.165217e-03	k: 475	n:240000
ZUFSP   240000 perm   62 sec   (3896 perm/sec)   p_kst 1.979167e-03   p_cons 1.358542e-01   p_joint 1.979167e-03

Joint ci ratio: 1.753077e-01	ci left: 1.821018e-03	ci right 2.174687e-03	k: 498	n:250000
Cons ci ratio: 1.977352e-02	ci left: 1.345032e-01	ci right 1.371933e-01	k: 33961	n:250000
KS ci ratio: 1.753077e-01	ci left: 1.821018e-03	ci right 2.174687e-03	k: 498	n:250000
ZUFSP   250000 perm   65 sec   (3843 perm/sec)   p_kst 1.992000e-03   p_cons 1.358440e-01   p_joint 1.992000e-03

Joint ci ratio: 1.718967e-01	ci left: 1.824560e-03	ci right 2.171307e-03	k: 518	n:260000
Cons ci ratio: 1.937699e-02	ci left: 1.346807e-01	ci right 1.373197e-01	k: 35359	n:260000
KS ci ratio: 1.718967e-01	ci left: 1.824560e-03	ci right 2.171307e-03	k: 518	n:260000
ZUFSP   260000 perm   69 sec   (3792 perm/sec)   p_kst 1.992308e-03   p_cons 1.359962e-01   p_joint 1.992308e-03

Joint ci ratio: 1.691498e-01	ci left: 1.817258e-03	ci right 2.156537e-03	k: 535	n:270000
Cons ci ratio: 1.900548e-02	ci left: 1.348197e-01	ci right 1.374103e-01	k: 36750	n:270000
KS ci ratio: 1.691498e-01	ci left: 1.817258e-03	ci right 2.156537e-03	k: 535	n:270000
ZUFSP   270000 perm   72 sec   (3743 perm/sec)   p_kst 1.981481e-03   p_cons 1.361111e-01   p_joint 1.981481e-03

Joint ci ratio: 1.668329e-01	ci left: 1.803674e-03	ci right 2.135341e-03	k: 550	n:280000
Cons ci ratio: 1.867611e-02	ci left: 1.346789e-01	ci right 1.372215e-01	k: 38065	n:280000
KS ci ratio: 1.668329e-01	ci left: 1.803674e-03	ci right 2.135341e-03	k: 550	n:280000
ZUFSP   280000 perm   76 sec   (3696 perm/sec)   p_kst 1.964286e-03   p_cons 1.359464e-01   p_joint 1.964286e-03

Joint ci ratio: 1.640290e-01	ci left: 1.804284e-03	ci right 2.129936e-03	k: 569	n:290000
Cons ci ratio: 1.834415e-02	ci left: 1.347921e-01	ci right 1.372910e-01	k: 39451	n:290000
KS ci ratio: 1.640290e-01	ci left: 1.804284e-03	ci right 2.129936e-03	k: 569	n:290000
ZUFSP   290000 perm   79 sec   (3652 perm/sec)   p_kst 1.962069e-03   p_cons 1.360379e-01   p_joint 1.962069e-03

Joint ci ratio: 1.617752e-01	ci left: 1.795299e-03	ci right 2.114445e-03	k: 585	n:300000
Cons ci ratio: 1.804335e-02	ci left: 1.347155e-01	ci right 1.371716e-01	k: 40782	n:300000
KS ci ratio: 1.617752e-01	ci left: 1.795299e-03	ci right 2.114445e-03	k: 585	n:300000
ZUFSP   300000 perm   83 sec   (3603 perm/sec)   p_kst 1.950000e-03   p_cons 1.359400e-01   p_joint 1.950000e-03

Joint ci ratio: 1.588208e-01	ci left: 1.805508e-03	ci right 2.120048e-03	k: 607	n:310000
Cons ci ratio: 1.775419e-02	ci left: 1.346794e-01	ci right 1.370951e-01	k: 42124	n:310000
KS ci ratio: 1.588208e-01	ci left: 1.805508e-03	ci right 2.120048e-03	k: 607	n:310000
ZUFSP   310000 perm   87 sec   (3559 perm/sec)   p_kst 1.958065e-03   p_cons 1.358839e-01   p_joint 1.958065e-03

Joint ci ratio: 1.565211e-01	ci left: 1.803116e-03	ci right 2.112264e-03	k: 625	n:320000
Cons ci ratio: 1.748386e-02	ci left: 1.345743e-01	ci right 1.369510e-01	k: 43443	n:320000
KS ci ratio: 1.565211e-01	ci left: 1.803116e-03	ci right 2.112264e-03	k: 625	n:320000
ZUFSP   320000 perm   91 sec   (3520 perm/sec)   p_kst 1.953125e-03   p_cons 1.357594e-01   p_joint 1.953125e-03

Joint ci ratio: 1.532494e-01	ci left: 1.827126e-03	ci right 2.133241e-03	k: 652	n:330000
Cons ci ratio: 1.720772e-02	ci left: 1.347174e-01	ci right 1.370587e-01	k: 44842	n:330000
KS ci ratio: 1.532494e-01	ci left: 1.827126e-03	ci right 2.133241e-03	k: 652	n:330000
ZUFSP   330000 perm   95 sec   (3480 perm/sec)   p_kst 1.975758e-03   p_cons 1.358848e-01   p_joint 1.975758e-03

Joint ci ratio: 1.515201e-01	ci left: 1.815821e-03	ci right 2.116298e-03	k: 667	n:340000
Cons ci ratio: 1.695042e-02	ci left: 1.347674e-01	ci right 1.370741e-01	k: 46212	n:340000
KS ci ratio: 1.515201e-01	ci left: 1.815821e-03	ci right 2.116298e-03	k: 667	n:340000
ZUFSP   340000 perm   99 sec   (3441 perm/sec)   p_kst 1.961765e-03   p_cons 1.359176e-01   p_joint 1.961765e-03

Joint ci ratio: 1.491928e-01	ci left: 1.821684e-03	ci right 2.118088e-03	k: 688	n:350000
Cons ci ratio: 1.671449e-02	ci left: 1.346723e-01	ci right 1.369451e-01	k: 47532	n:350000
KS ci ratio: 1.491928e-01	ci left: 1.821684e-03	ci right 2.118088e-03	k: 688	n:350000
ZUFSP   350000 perm   103 sec   (3402 perm/sec)   p_kst 1.965714e-03   p_cons 1.358057e-01   p_joint 1.965714e-03

Joint ci ratio: 1.473862e-01	ci left: 1.816551e-03	ci right 2.108225e-03	k: 705	n:360000
Cons ci ratio: 1.648306e-02	ci left: 1.346548e-01	ci right 1.368955e-01	k: 48878	n:360000
KS ci ratio: 1.473862e-01	ci left: 1.816551e-03	ci right 2.108225e-03	k: 705	n:360000
ZUFSP   360000 perm   107 sec   (3362 perm/sec)   p_kst 1.958333e-03   p_cons 1.357722e-01   p_joint 1.958333e-03

Joint ci ratio: 1.454422e-01	ci left: 1.816925e-03	ci right 2.104478e-03	k: 724	n:370000
Cons ci ratio: 1.624864e-02	ci left: 1.348162e-01	ci right 1.370274e-01	k: 50290	n:370000
KS ci ratio: 1.454422e-01	ci left: 1.816925e-03	ci right 2.104478e-03	k: 724	n:370000
ZUFSP   370000 perm   112 sec   (3318 perm/sec)   p_kst 1.956757e-03   p_cons 1.359189e-01   p_joint 1.956757e-03

Joint ci ratio: 1.435732e-01	ci left: 1.817304e-03	ci right 2.100903e-03	k: 743	n:380000
Cons ci ratio: 1.603274e-02	ci left: 1.348408e-01	ci right 1.370227e-01	k: 51653	n:380000
KS ci ratio: 1.435732e-01	ci left: 1.817304e-03	ci right 2.100903e-03	k: 743	n:380000
ZUFSP   380000 perm   116 sec   (3282 perm/sec)   p_kst 1.955263e-03   p_cons 1.359289e-01   p_joint 1.955263e-03

Joint ci ratio: 1.421483e-01	ci left: 1.807792e-03	ci right 2.086870e-03	k: 758	n:390000
Cons ci ratio: 1.582695e-02	ci left: 1.348387e-01	ci right 1.369923e-01	k: 53006	n:390000
KS ci ratio: 1.421483e-01	ci left: 1.807792e-03	ci right 2.086870e-03	k: 758	n:390000
ZUFSP   390000 perm   120 sec   (3245 perm/sec)   p_kst 1.943590e-03   p_cons 1.359128e-01   p_joint 1.943590e-03

Joint ci ratio: 1.407649e-01	ci left: 1.798770e-03	ci right 2.073525e-03	k: 773	n:400000
Cons ci ratio: 1.562772e-02	ci left: 1.348544e-01	ci right 1.369809e-01	k: 54366	n:400000
KS ci ratio: 1.407649e-01	ci left: 1.798770e-03	ci right 2.073525e-03	k: 773	n:400000
ZUFSP   400000 perm   125 sec   (3210 perm/sec)   p_kst 1.932500e-03   p_cons 1.359150e-01   p_joint 1.932500e-03

Joint ci ratio: 1.392445e-01	ci left: 1.794908e-03	ci right 2.065867e-03	k: 790	n:410000
Cons ci ratio: 1.542974e-02	ci left: 1.349618e-01	ci right 1.370628e-01	k: 55764	n:410000
KS ci ratio: 1.392445e-01	ci left: 1.794908e-03	ci right 2.065867e-03	k: 790	n:410000
ZUFSP   410000 perm   129 sec   (3174 perm/sec)   p_kst 1.926829e-03   p_cons 1.360098e-01   p_joint 1.926829e-03

Joint ci ratio: 1.377722e-01	ci left: 1.791245e-03	ci right 2.058558e-03	k: 807	n:420000
Cons ci ratio: 1.524558e-02	ci left: 1.349646e-01	ci right 1.370404e-01	k: 57120	n:420000
KS ci ratio: 1.377722e-01	ci left: 1.791245e-03	ci right 2.058558e-03	k: 807	n:420000
ZUFSP   420000 perm   134 sec   (3140 perm/sec)   p_kst 1.921429e-03   p_cons 1.360000e-01   p_joint 1.921429e-03

Joint ci ratio: 1.361805e-01	ci left: 1.792261e-03	ci right 2.056384e-03	k: 826	n:430000
Cons ci ratio: 1.506891e-02	ci left: 1.349512e-01	ci right 1.370025e-01	k: 58469	n:430000
KS ci ratio: 1.361805e-01	ci left: 1.792261e-03	ci right 2.056384e-03	k: 826	n:430000
ZUFSP   430000 perm   138 sec   (3107 perm/sec)   p_kst 1.920930e-03   p_cons 1.359744e-01   p_joint 1.920930e-03

Joint ci ratio: 1.348023e-01	ci left: 1.788854e-03	ci right 2.049593e-03	k: 843	n:440000
Cons ci ratio: 1.490459e-02	ci left: 1.348389e-01	ci right 1.368659e-01	k: 59774	n:440000
KS ci ratio: 1.348023e-01	ci left: 1.788854e-03	ci right 2.049593e-03	k: 843	n:440000
ZUFSP   440000 perm   143 sec   (3073 perm/sec)   p_kst 1.915909e-03   p_cons 1.358500e-01   p_joint 1.915909e-03

Joint ci ratio: 1.333876e-01	ci left: 1.787760e-03	ci right 2.045388e-03	k: 861	n:450000
Cons ci ratio: 1.473882e-02	ci left: 1.348380e-01	ci right 1.368423e-01	k: 61127	n:450000
KS ci ratio: 1.333876e-01	ci left: 1.787760e-03	ci right 2.045388e-03	k: 861	n:450000
ZUFSP   450000 perm   148 sec   (3041 perm/sec)   p_kst 1.913333e-03   p_cons 1.358378e-01   p_joint 1.913333e-03

Joint ci ratio: 1.317170e-01	ci left: 1.795136e-03	ci right 2.050334e-03	k: 883	n:460000
Cons ci ratio: 1.458711e-02	ci left: 1.346985e-01	ci right 1.366800e-01	k: 62416	n:460000
KS ci ratio: 1.317170e-01	ci left: 1.795136e-03	ci right 2.050334e-03	k: 883	n:460000
ZUFSP   460000 perm   153 sec   (3009 perm/sec)   p_kst 1.919565e-03   p_cons 1.356870e-01   p_joint 1.919565e-03

Joint ci ratio: 1.301796e-01	ci left: 1.800159e-03	ci right 2.052853e-03	k: 904	n:470000
Cons ci ratio: 1.443213e-02	ci left: 1.346924e-01	ci right 1.366525e-01	k: 63765	n:470000
KS ci ratio: 1.301796e-01	ci left: 1.800159e-03	ci right 2.052853e-03	k: 904	n:470000
ZUFSP   470000 perm   158 sec   (2977 perm/sec)   p_kst 1.923404e-03   p_cons 1.356702e-01   p_joint 1.923404e-03

Joint ci ratio: 1.286947e-01	ci left: 1.804989e-03	ci right 2.055251e-03	k: 925	n:480000
Cons ci ratio: 1.427995e-02	ci left: 1.347199e-01	ci right 1.366595e-01	k: 65130	n:480000
KS ci ratio: 1.286947e-01	ci left: 1.804989e-03	ci right 2.055251e-03	k: 925	n:480000
ZUFSP   480000 perm   163 sec   (2946 perm/sec)   p_kst 1.927083e-03   p_cons 1.356875e-01   p_joint 1.927083e-03

Joint ci ratio: 1.275297e-01	ci left: 1.801734e-03	ci right 2.049112e-03	k: 942	n:490000
Cons ci ratio: 1.413249e-02	ci left: 1.347463e-01	ci right 1.366662e-01	k: 66495	n:490000
KS ci ratio: 1.275297e-01	ci left: 1.801734e-03	ci right 2.049112e-03	k: 942	n:490000
ZUFSP   490000 perm   168 sec   (2915 perm/sec)   p_kst 1.922449e-03   p_cons 1.357041e-01   p_joint 1.922449e-03

Joint ci ratio: 1.267269e-01	ci left: 1.788936e-03	ci right 2.032894e-03	k: 954	n:500000
Cons ci ratio: 1.398939e-02	ci left: 1.347738e-01	ci right 1.366744e-01	k: 67861	n:500000
KS ci ratio: 1.267269e-01	ci left: 1.788936e-03	ci right 2.032894e-03	k: 954	n:500000
ZUFSP   500000 perm   173 sec   (2885 perm/sec)   p_kst 1.908000e-03   p_cons 1.357220e-01   p_joint 1.908000e-03

Joint ci ratio: 1.253559e-01	ci left: 1.793737e-03	ci right 2.035507e-03	k: 975	n:510000
Cons ci ratio: 1.385066e-02	ci left: 1.347983e-01	ci right 1.366803e-01	k: 69226	n:510000
KS ci ratio: 1.253559e-01	ci left: 1.793737e-03	ci right 2.035507e-03	k: 975	n:510000
ZUFSP   510000 perm   178 sec   (2858 perm/sec)   p_kst 1.911765e-03   p_cons 1.357373e-01   p_joint 1.911765e-03

Joint ci ratio: 1.245300e-01	ci left: 1.783460e-03	ci right 2.022144e-03	k: 988	n:520000
Cons ci ratio: 1.371823e-02	ci left: 1.347837e-01	ci right 1.366473e-01	k: 70571	n:520000
KS ci ratio: 1.245300e-01	ci left: 1.783460e-03	ci right 2.022144e-03	k: 988	n:520000
ZUFSP   520000 perm   184 sec   (2829 perm/sec)   p_kst 1.900000e-03   p_cons 1.357135e-01   p_joint 1.900000e-03

Joint ci ratio: 1.232284e-01	ci left: 1.788205e-03	ci right 2.024840e-03	k: 1009	n:530000
Cons ci ratio: 1.358930e-02	ci left: 1.347734e-01	ci right 1.366193e-01	k: 71918	n:530000
KS ci ratio: 1.232284e-01	ci left: 1.788205e-03	ci right 2.024840e-03	k: 1009	n:530000
ZUFSP   530000 perm   189 sec   (2801 perm/sec)   p_kst 1.903774e-03   p_cons 1.356943e-01   p_joint 1.903774e-03

Joint ci ratio: 1.217304e-01	ci left: 1.799969e-03	ci right 2.035056e-03	k: 1034	n:540000
Cons ci ratio: 1.346246e-02	ci left: 1.347895e-01	ci right 1.366182e-01	k: 73279	n:540000
KS ci ratio: 1.217304e-01	ci left: 1.799969e-03	ci right 2.035056e-03	k: 1034	n:540000
ZUFSP   540000 perm   195 sec   (2774 perm/sec)   p_kst 1.914815e-03   p_cons 1.357019e-01   p_joint 1.914815e-03

Joint ci ratio: 1.205137e-01	ci left: 1.804267e-03	ci right 2.037393e-03	k: 1055	n:550000
Cons ci ratio: 1.334531e-02	ci left: 1.346962e-01	ci right 1.365076e-01	k: 74580	n:550000
KS ci ratio: 1.205137e-01	ci left: 1.804267e-03	ci right 2.037393e-03	k: 1055	n:550000
ZUFSP   550000 perm   200 sec   (2747 perm/sec)   p_kst 1.918182e-03   p_cons 1.356000e-01   p_joint 1.918182e-03

Joint ci ratio: 1.193883e-01	ci left: 1.806691e-03	ci right 2.037796e-03	k: 1075	n:560000
Cons ci ratio: 1.322774e-02	ci left: 1.346669e-01	ci right 1.364619e-01	k: 75915	n:560000
KS ci ratio: 1.193883e-01	ci left: 1.806691e-03	ci right 2.037796e-03	k: 1075	n:560000
ZUFSP   560000 perm   206 sec   (2720 perm/sec)   p_kst 1.919643e-03   p_cons 1.355625e-01   p_joint 1.919643e-03

Joint ci ratio: 1.182399e-01	ci left: 1.810742e-03	ci right 2.039982e-03	k: 1096	n:570000
Cons ci ratio: 1.311832e-02	ci left: 1.345477e-01	ci right 1.363261e-01	k: 77198	n:570000
KS ci ratio: 1.182399e-01	ci left: 1.810742e-03	ci right 2.039982e-03	k: 1096	n:570000
ZUFSP   570000 perm   212 sec   (2694 perm/sec)   p_kst 1.922807e-03   p_cons 1.354351e-01   p_joint 1.922807e-03

Joint ci ratio: 1.171240e-01	ci left: 1.814664e-03	ci right 2.042082e-03	k: 1117	n:580000
Cons ci ratio: 1.300344e-02	ci left: 1.345789e-01	ci right 1.363420e-01	k: 78566	n:580000
KS ci ratio: 1.171240e-01	ci left: 1.814664e-03	ci right 2.042082e-03	k: 1117	n:580000
ZUFSP   580000 perm   217 sec   (2668 perm/sec)   p_kst 1.925862e-03   p_cons 1.354586e-01   p_joint 1.925862e-03

Joint ci ratio: 1.160901e-01	ci left: 1.816816e-03	ci right 2.042357e-03	k: 1137	n:590000
Cons ci ratio: 1.288937e-02	ci left: 1.346479e-01	ci right 1.363964e-01	k: 79957	n:590000
KS ci ratio: 1.160901e-01	ci left: 1.816816e-03	ci right 2.042357e-03	k: 1137	n:590000
ZUFSP   590000 perm   223 sec   (2642 perm/sec)   p_kst 1.927119e-03   p_cons 1.355203e-01   p_joint 1.927119e-03

Joint ci ratio: 1.149341e-01	ci left: 1.823762e-03	ci right 2.047757e-03	k: 1160	n:600000
Cons ci ratio: 1.277853e-02	ci left: 1.347097e-01	ci right 1.364438e-01	k: 81345	n:600000
KS ci ratio: 1.149341e-01	ci left: 1.823762e-03	ci right 2.047757e-03	k: 1160	n:600000
ZUFSP   600000 perm   229 sec   (2618 perm/sec)   p_kst 1.933333e-03   p_cons 1.355750e-01   p_joint 1.933333e-03

Joint ci ratio: 1.138120e-01	ci left: 1.830491e-03	ci right 2.052970e-03	k: 1183	n:610000
Cons ci ratio: 1.266722e-02	ci left: 1.348300e-01	ci right 1.365505e-01	k: 82770	n:610000
KS ci ratio: 1.138120e-01	ci left: 1.830491e-03	ci right 2.052970e-03	k: 1183	n:610000
ZUFSP   610000 perm   235 sec   (2594 perm/sec)   p_kst 1.939344e-03   p_cons 1.356885e-01   p_joint 1.939344e-03

Joint ci ratio: 1.128627e-01	ci left: 1.832311e-03	ci right 2.053030e-03	k: 1203	n:620000
Cons ci ratio: 1.256568e-02	ci left: 1.348179e-01	ci right 1.365242e-01	k: 84115	n:620000
KS ci ratio: 1.128627e-01	ci left: 1.832311e-03	ci right 2.053030e-03	k: 1203	n:620000
ZUFSP   620000 perm   241 sec   (2571 perm/sec)   p_kst 1.940323e-03   p_cons 1.356694e-01   p_joint 1.940323e-03

Joint ci ratio: 1.119826e-01	ci left: 1.832537e-03	ci right 2.051449e-03	k: 1222	n:630000
Cons ci ratio: 1.246182e-02	ci left: 1.348948e-01	ci right 1.365879e-01	k: 85516	n:630000
KS ci ratio: 1.119826e-01	ci left: 1.832537e-03	ci right 2.051449e-03	k: 1222	n:630000
ZUFSP   630000 perm   247 sec   (2546 perm/sec)   p_kst 1.939683e-03   p_cons 1.357397e-01   p_joint 1.939683e-03

Joint ci ratio: 1.113025e-01	ci left: 1.826686e-03	ci right 2.043487e-03	k: 1237	n:640000
Cons ci ratio: 1.236881e-02	ci left: 1.348120e-01	ci right 1.364913e-01	k: 86816	n:640000
KS ci ratio: 1.113025e-01	ci left: 1.826686e-03	ci right 2.043487e-03	k: 1237	n:640000
ZUFSP   640000 perm   254 sec   (2523 perm/sec)   p_kst 1.932813e-03   p_cons 1.356500e-01   p_joint 1.932813e-03

Joint ci ratio: 1.104142e-01	ci left: 1.828500e-03	ci right 2.043670e-03	k: 1257	n:650000
Cons ci ratio: 1.227261e-02	ci left: 1.348315e-01	ci right 1.364979e-01	k: 88181	n:650000
KS ci ratio: 1.104142e-01	ci left: 1.828500e-03	ci right 2.043670e-03	k: 1257	n:650000
ZUFSP   650000 perm   260 sec   (2500 perm/sec)   p_kst 1.933846e-03   p_cons 1.356631e-01   p_joint 1.933846e-03

Joint ci ratio: 1.098053e-01	ci left: 1.821423e-03	ci right 2.034502e-03	k: 1271	n:660000
Cons ci ratio: 1.217910e-02	ci left: 1.348414e-01	ci right 1.364952e-01	k: 89540	n:660000
KS ci ratio: 1.098053e-01	ci left: 1.821423e-03	ci right 2.034502e-03	k: 1271	n:660000
ZUFSP   660000 perm   266 sec   (2478 perm/sec)   p_kst 1.925758e-03   p_cons 1.356667e-01   p_joint 1.925758e-03

Joint ci ratio: 1.089098e-01	ci left: 1.824723e-03	ci right 2.036337e-03	k: 1292	n:670000
Cons ci ratio: 1.208408e-02	ci left: 1.349210e-01	ci right 1.365628e-01	k: 90946	n:670000
KS ci ratio: 1.089098e-01	ci left: 1.824723e-03	ci right 2.036337e-03	k: 1292	n:670000
ZUFSP   670000 perm   273 sec   (2456 perm/sec)   p_kst 1.928358e-03   p_cons 1.357403e-01   p_joint 1.928358e-03

Joint ci ratio: 1.080771e-01	ci left: 1.826503e-03	ci right 2.036600e-03	k: 1312	n:680000
Cons ci ratio: 1.199695e-02	ci left: 1.348868e-01	ci right 1.365163e-01	k: 92276	n:680000
KS ci ratio: 1.080771e-01	ci left: 1.826503e-03	ci right 2.036600e-03	k: 1312	n:680000
ZUFSP   680000 perm   279 sec   (2434 perm/sec)   p_kst 1.929412e-03   p_cons 1.357000e-01   p_joint 1.929412e-03

Joint ci ratio: 1.070622e-01	ci left: 1.835289e-03	ci right 2.044290e-03	k: 1337	n:690000
Cons ci ratio: 1.190970e-02	ci left: 1.348927e-01	ci right 1.365103e-01	k: 93633	n:690000
KS ci ratio: 1.070622e-01	ci left: 1.835289e-03	ci right 2.044290e-03	k: 1337	n:690000
ZUFSP   690000 perm   286 sec   (2413 perm/sec)   p_kst 1.937681e-03   p_cons 1.357000e-01   p_joint 1.937681e-03

Joint ci ratio: 1.064280e-01	ci left: 1.831318e-03	ci right 2.038553e-03	k: 1353	n:700000
Cons ci ratio: 1.182541e-02	ci left: 1.348771e-01	ci right 1.364830e-01	k: 94975	n:700000
KS ci ratio: 1.064280e-01	ci left: 1.831318e-03	ci right 2.038553e-03	k: 1353	n:700000
ZUFSP   700000 perm   293 sec   (2392 perm/sec)   p_kst 1.932857e-03   p_cons 1.356786e-01   p_joint 1.932857e-03

Joint ci ratio: 1.057663e-01	ci left: 1.828833e-03	ci right 2.034420e-03	k: 1370	n:710000
Cons ci ratio: 1.173964e-02	ci left: 1.349267e-01	ci right 1.365214e-01	k: 96363	n:710000
KS ci ratio: 1.057663e-01	ci left: 1.828833e-03	ci right 2.034420e-03	k: 1370	n:710000
ZUFSP   710000 perm   299 sec   (2372 perm/sec)   p_kst 1.929577e-03   p_cons 1.357225e-01   p_joint 1.929577e-03

Joint ci ratio: 1.048146e-01	ci left: 1.837240e-03	ci right 2.041800e-03	k: 1395	n:720000
Cons ci ratio: 1.165681e-02	ci left: 1.349527e-01	ci right 1.365364e-01	k: 97735	n:720000
KS ci ratio: 1.048146e-01	ci left: 1.837240e-03	ci right 2.041800e-03	k: 1395	n:720000
ZUFSP   720000 perm   306 sec   (2352 perm/sec)   p_kst 1.937500e-03   p_cons 1.357431e-01   p_joint 1.937500e-03

Joint ci ratio: 1.039614e-01	ci left: 1.842757e-03	ci right 2.046159e-03	k: 1418	n:730000
Cons ci ratio: 1.157922e-02	ci left: 1.349069e-01	ci right 1.364795e-01	k: 99055	n:730000
KS ci ratio: 1.039614e-01	ci left: 1.842757e-03	ci right 2.046159e-03	k: 1418	n:730000
ZUFSP   730000 perm   313 sec   (2332 perm/sec)   p_kst 1.942466e-03   p_cons 1.356918e-01   p_joint 1.942466e-03

Joint ci ratio: 1.035251e-01	ci left: 1.833650e-03	ci right 2.035146e-03	k: 1430	n:740000
Cons ci ratio: 1.150045e-02	ci left: 1.349178e-01	ci right 1.364797e-01	k: 100416	n:740000
KS ci ratio: 1.035251e-01	ci left: 1.833650e-03	ci right 2.035146e-03	k: 1430	n:740000
ZUFSP   740000 perm   320 sec   (2313 perm/sec)   p_kst 1.932432e-03   p_cons 1.356973e-01   p_joint 1.932432e-03

Joint ci ratio: 1.028446e-01	ci left: 1.833881e-03	ci right 2.033997e-03	k: 1449	n:750000
Cons ci ratio: 1.142326e-02	ci left: 1.349283e-01	ci right 1.364798e-01	k: 101777	n:750000
KS ci ratio: 1.028446e-01	ci left: 1.833881e-03	ci right 2.033997e-03	k: 1449	n:750000
ZUFSP   750000 perm   327 sec   (2292 perm/sec)   p_kst 1.932000e-03   p_cons 1.357027e-01   p_joint 1.932000e-03

Joint ci ratio: 1.020036e-01	ci left: 1.840521e-03	ci right 2.039621e-03	k: 1473	n:760000
Cons ci ratio: 1.134634e-02	ci left: 1.349649e-01	ci right 1.365063e-01	k: 103158	n:760000
KS ci ratio: 1.020036e-01	ci left: 1.840521e-03	ci right 2.039621e-03	k: 1473	n:760000
ZUFSP   760000 perm   334 sec   (2274 perm/sec)   p_kst 1.938158e-03   p_cons 1.357342e-01   p_joint 1.938158e-03

Joint ci ratio: 1.015230e-01	ci left: 1.834337e-03	ci right 2.031777e-03	k: 1487	n:770000
Cons ci ratio: 1.127207e-02	ci left: 1.349772e-01	ci right 1.365086e-01	k: 104521	n:770000
KS ci ratio: 1.015230e-01	ci left: 1.834337e-03	ci right 2.031777e-03	k: 1487	n:770000
ZUFSP   770000 perm   341 sec   (2256 perm/sec)   p_kst 1.931169e-03   p_cons 1.357416e-01   p_joint 1.931169e-03

Joint ci ratio: 1.009817e-01	ci left: 1.830813e-03	ci right 2.026761e-03	k: 1503	n:780000
Cons ci ratio: 1.120070e-02	ci left: 1.349586e-01	ci right 1.364800e-01	k: 105860	n:780000
KS ci ratio: 1.009817e-01	ci left: 1.830813e-03	ci right 2.026761e-03	k: 1503	n:780000
ZUFSP   780000 perm   349 sec   (2238 perm/sec)   p_kst 1.926923e-03   p_cons 1.357179e-01   p_joint 1.926923e-03

Joint ci ratio: 1.004160e-01	ci left: 1.828615e-03	ci right 2.023167e-03	k: 1520	n:790000
Cons ci ratio: 1.113278e-02	ci left: 1.348963e-01	ci right 1.364077e-01	k: 107164	n:790000
KS ci ratio: 1.004160e-01	ci left: 1.828615e-03	ci right 2.023167e-03	k: 1520	n:790000
ZUFSP   790000 perm   356 sec   (2220 perm/sec)   p_kst 1.924051e-03   p_cons 1.356506e-01   p_joint 1.924051e-03

Joint ci ratio: 9.947153e-02	ci left: 1.841102e-03	ci right 2.035033e-03	k: 1549	n:800000
Cons ci ratio: 1.106473e-02	ci left: 1.348642e-01	ci right 1.363659e-01	k: 108491	n:800000
KS ci ratio: 9.947153e-02	ci left: 1.841102e-03	ci right 2.035033e-03	k: 1549	n:800000
ZUFSP   800000 perm   363 sec   (2203 perm/sec)   p_kst 1.936250e-03   p_cons 1.356138e-01   p_joint 1.936250e-03

Outputting figure to mutsig2_images.part000000000200/ZUFSP.2_1773_800000_0.0019363_0.13561_0.0019363.png
                gene_name: ZUFSP
               theta_stop: 0.099 
                    nperm: 800000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0020 

Current progress: 97 percent done.
ZWILCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
Cons ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KS ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
ZWILCH   10000 perm   1 sec   (6724 perm/sec)   p_kst 8.690000e-01   p_cons 5.650000e-02   p_joint 4.829000e-01

Joint ci ratio: 5.210831e-02	ci left: 2.147702e-01	ci right 2.263111e-01	k: 4410	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 1.078193e-02	ci left: 8.638393e-01	ci right 8.732533e-01	k: 17372	n:20000
ZWILCH   20000 perm   3 sec   (5886 perm/sec)   p_kst 8.686000e-01   p_cons 6.240000e-02   p_joint 2.205000e-01

Joint ci ratio: 4.799636e-02	ci left: 1.775160e-01	ci right 1.862790e-01	k: 5456	n:30000
Cons ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
KS ci ratio: 8.818569e-03	ci left: 8.643198e-01	ci right 8.720087e-01	k: 26046	n:30000
ZWILCH   30000 perm   5 sec   (5614 perm/sec)   p_kst 8.682000e-01   p_cons 6.140000e-02   p_joint 1.818667e-01

Outputting figure to mutsig2_images.part000000000200/ZWILCH.2_1848_30000_0.8682_0.0614_0.18187.png
                gene_name: ZWILCH
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 98 percent done.
ZYX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
KS ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
ZYX   10000 perm   2 sec   (6525 perm/sec)   p_kst 6.411000e-01   p_cons 9.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZYX.2_1755_10000_0.6411_0.9189_1.png
                gene_name: ZYX
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/216246/iteration1/scatter.0000000200
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 200 -i LUAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUAD/1910391/0.ProcessCoverageForMutSig.Finished/LUAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUAD/1910307/0.MutSigPreprocess.Finished/LUAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

*** Scatter stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17556
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17562
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17566
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17569
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17573
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17579
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17586
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:29:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17596
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17601
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17606
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17610
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17616
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17622
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:30:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17627
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:31:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17632
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:31:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17639
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:31:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17643
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:31:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17648
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:31:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17652
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:32:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17657
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:32:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17662
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17666
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17670
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17674
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17680
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17685
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17689
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:33:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17692
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:34:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17694
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:34:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17699
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:34:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17702
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:34:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17704
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:34:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17706
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:35:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17710
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:35:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17714
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:35:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17717
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:35:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17720
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:36:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17723
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:36:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17729
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:36:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17732
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:36:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17736
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:37:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17740
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:36:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17748
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:37:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17752
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:37:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17756
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:37:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17761
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:38:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17765
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:38:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17771
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:38:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17775
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:38:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17780
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:38:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17785
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:39:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17791
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:39:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17795
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:39:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17801
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:41:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17806
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:42:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17810
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:42:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17815
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:42:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17819
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:43:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17824
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:43:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17829
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:43:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17834
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:44:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17838
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:44:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17844
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:45:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17850
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:45:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17857
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:46:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17861
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:47:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17867
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:47:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17871
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:47:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17876
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:48:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17881
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:48:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17886
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:48:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17890
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:48:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17894
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:50:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17898
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:50:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17902
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:50:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17905
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:51:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17907
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:51:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17910
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:52:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17912
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:52:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17915
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:53:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17918
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:54:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17955
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:55:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17960
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:55:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17965
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:55:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17971
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:56:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17981
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17985
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17989
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 17997
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18006
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18011
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18015
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:57:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18020
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18025
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18030
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18034
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18037
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18043
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18047
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18050
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18057
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:58:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18063
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 17:59:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18068
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18072
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18078
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18084
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18089
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18093
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:19:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18099
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18105
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18110
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18114
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18120
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18126
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:00:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18130
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18136
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18140
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18147
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18151
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18155
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18161
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18166
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:01:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18172
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18177
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18180
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18186
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18192
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18196
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18200
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18206
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18211
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:02:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18217
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:03:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18220
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:03:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18224
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:19:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18227
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:03:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18230
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:04:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18233
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:04:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18236
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:04:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18242
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:04:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18246
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:05:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18250
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:05:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18255
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:05:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18261
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18266
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18270
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18278
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18283
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18290
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18294
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18298
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18304
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18351
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:06:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18357
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18362
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18366
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18373
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18378
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18381
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:07:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18385
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18389
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18392
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18395
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18398
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18467
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18472
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18476
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18481
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18485
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:08:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18489
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18494
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18499
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18504
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18509
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18512
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18515
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18518
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18522
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18525
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18529
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:09:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18536
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:19:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18541
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18547
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18552
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18558
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18563
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18567
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18573
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18578
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18584
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18591
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18595
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:10:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18599
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:11:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18603
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:11:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18607
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:11:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18613
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:11:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18618
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:12:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18622
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:12:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18626
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:12:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18631
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Wed Oct 24 18:12:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18636
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
*** Scatter retry log:
==> scatter.0000000001.tries <==
1
==> scatter.0000000002.tries <==
1
==> scatter.0000000003.tries <==
1
==> scatter.0000000004.tries <==
1
==> scatter.0000000005.tries <==
1
==> scatter.0000000006.tries <==
1
==> scatter.0000000007.tries <==
1
==> scatter.0000000008.tries <==
1
==> scatter.0000000009.tries <==
1
==> scatter.0000000010.tries <==
1
==> scatter.0000000011.tries <==
1
==> scatter.0000000012.tries <==
1
==> scatter.0000000013.tries <==
1
==> scatter.0000000014.tries <==
1
==> scatter.0000000015.tries <==
1
==> scatter.0000000016.tries <==
1
==> scatter.0000000017.tries <==
1
==> scatter.0000000018.tries <==
1
==> scatter.0000000019.tries <==
1
==> scatter.0000000020.tries <==
1
==> scatter.0000000021.tries <==
1
==> scatter.0000000022.tries <==
1
==> scatter.0000000023.tries <==
1
==> scatter.0000000024.tries <==
1
==> scatter.0000000025.tries <==
1
==> scatter.0000000026.tries <==
1
==> scatter.0000000027.tries <==
1
==> scatter.0000000028.tries <==
1
==> scatter.0000000029.tries <==
1
==> scatter.0000000030.tries <==
1
==> scatter.0000000031.tries <==
1
==> scatter.0000000032.tries <==
1
==> scatter.0000000033.tries <==
1
==> scatter.0000000034.tries <==
1
==> scatter.0000000035.tries <==
1
==> scatter.0000000036.tries <==
1
==> scatter.0000000037.tries <==
1
==> scatter.0000000038.tries <==
1
==> scatter.0000000039.tries <==
1
==> scatter.0000000040.tries <==
1
==> scatter.0000000041.tries <==
1
==> scatter.0000000042.tries <==
1
==> scatter.0000000043.tries <==
1
==> scatter.0000000044.tries <==
1
==> scatter.0000000045.tries <==
1
==> scatter.0000000046.tries <==
1
==> scatter.0000000047.tries <==
1
==> scatter.0000000048.tries <==
1
==> scatter.0000000049.tries <==
1
==> scatter.0000000050.tries <==
1
==> scatter.0000000051.tries <==
1
==> scatter.0000000052.tries <==
1
==> scatter.0000000053.tries <==
1
==> scatter.0000000054.tries <==
1
==> scatter.0000000055.tries <==
1
==> scatter.0000000056.tries <==
1
==> scatter.0000000057.tries <==
1
==> scatter.0000000058.tries <==
1
==> scatter.0000000059.tries <==
1
==> scatter.0000000060.tries <==
1
==> scatter.0000000061.tries <==
1
==> scatter.0000000062.tries <==
1
==> scatter.0000000063.tries <==
1
==> scatter.0000000064.tries <==
1
==> scatter.0000000065.tries <==
1
==> scatter.0000000066.tries <==
1
==> scatter.0000000067.tries <==
1
==> scatter.0000000068.tries <==
1
==> scatter.0000000069.tries <==
1
==> scatter.0000000070.tries <==
1
==> scatter.0000000071.tries <==
1
==> scatter.0000000072.tries <==
1
==> scatter.0000000073.tries <==
1
==> scatter.0000000074.tries <==
1
==> scatter.0000000075.tries <==
1
==> scatter.0000000076.tries <==
1
==> scatter.0000000077.tries <==
1
==> scatter.0000000078.tries <==
1
==> scatter.0000000079.tries <==
1
==> scatter.0000000080.tries <==
1
==> scatter.0000000081.tries <==
1
==> scatter.0000000082.tries <==
1
==> scatter.0000000083.tries <==
1
==> scatter.0000000084.tries <==
1
==> scatter.0000000085.tries <==
1
==> scatter.0000000086.tries <==
1
==> scatter.0000000087.tries <==
1
==> scatter.0000000088.tries <==
1
==> scatter.0000000089.tries <==
1
==> scatter.0000000090.tries <==
1
==> scatter.0000000091.tries <==
1
==> scatter.0000000092.tries <==
1
==> scatter.0000000093.tries <==
1
==> scatter.0000000094.tries <==
1
==> scatter.0000000095.tries <==
1
==> scatter.0000000096.tries <==
1
==> scatter.0000000097.tries <==
1
==> scatter.0000000098.tries <==
1
==> scatter.0000000099.tries <==
1
==> scatter.0000000100.tries <==
1
==> scatter.0000000101.tries <==
1
==> scatter.0000000102.tries <==
1
==> scatter.0000000103.tries <==
1
==> scatter.0000000104.tries <==
1
==> scatter.0000000105.tries <==
1
==> scatter.0000000106.tries <==
1
==> scatter.0000000107.tries <==
1
==> scatter.0000000108.tries <==
1
==> scatter.0000000109.tries <==
2
==> scatter.0000000110.tries <==
1
==> scatter.0000000111.tries <==
1
==> scatter.0000000112.tries <==
1
==> scatter.0000000113.tries <==
1
==> scatter.0000000114.tries <==
1
==> scatter.0000000115.tries <==
1
==> scatter.0000000116.tries <==
1
==> scatter.0000000117.tries <==
1
==> scatter.0000000118.tries <==
1
==> scatter.0000000119.tries <==
1
==> scatter.0000000120.tries <==
1
==> scatter.0000000121.tries <==
1
==> scatter.0000000122.tries <==
1
==> scatter.0000000123.tries <==
1
==> scatter.0000000124.tries <==
1
==> scatter.0000000125.tries <==
1
==> scatter.0000000126.tries <==
1
==> scatter.0000000127.tries <==
1
==> scatter.0000000128.tries <==
1
==> scatter.0000000129.tries <==
1
==> scatter.0000000130.tries <==
1
==> scatter.0000000131.tries <==
1
==> scatter.0000000132.tries <==
1
==> scatter.0000000133.tries <==
1
==> scatter.0000000134.tries <==
1
==> scatter.0000000135.tries <==
2
==> scatter.0000000136.tries <==
1
==> scatter.0000000137.tries <==
1
==> scatter.0000000138.tries <==
1
==> scatter.0000000139.tries <==
1
==> scatter.0000000140.tries <==
1
==> scatter.0000000141.tries <==
1
==> scatter.0000000142.tries <==
1
==> scatter.0000000143.tries <==
1
==> scatter.0000000144.tries <==
1
==> scatter.0000000145.tries <==
1
==> scatter.0000000146.tries <==
1
==> scatter.0000000147.tries <==
1
==> scatter.0000000148.tries <==
1
==> scatter.0000000149.tries <==
1
==> scatter.0000000150.tries <==
1
==> scatter.0000000151.tries <==
1
==> scatter.0000000152.tries <==
1
==> scatter.0000000153.tries <==
1
==> scatter.0000000154.tries <==
1
==> scatter.0000000155.tries <==
1
==> scatter.0000000156.tries <==
1
==> scatter.0000000157.tries <==
1
==> scatter.0000000158.tries <==
1
==> scatter.0000000159.tries <==
1
==> scatter.0000000160.tries <==
1
==> scatter.0000000161.tries <==
1
==> scatter.0000000162.tries <==
1
==> scatter.0000000163.tries <==
1
==> scatter.0000000164.tries <==
1
==> scatter.0000000165.tries <==
1
==> scatter.0000000166.tries <==
1
==> scatter.0000000167.tries <==
1
==> scatter.0000000168.tries <==
1
==> scatter.0000000169.tries <==
1
==> scatter.0000000170.tries <==
1
==> scatter.0000000171.tries <==
1
==> scatter.0000000172.tries <==
1
==> scatter.0000000173.tries <==
1
==> scatter.0000000174.tries <==
1
==> scatter.0000000175.tries <==
1
==> scatter.0000000176.tries <==
1
==> scatter.0000000177.tries <==
1
==> scatter.0000000178.tries <==
1
==> scatter.0000000179.tries <==
1
==> scatter.0000000180.tries <==
1
==> scatter.0000000181.tries <==
2
==> scatter.0000000182.tries <==
1
==> scatter.0000000183.tries <==
1
==> scatter.0000000184.tries <==
1
==> scatter.0000000185.tries <==
1
==> scatter.0000000186.tries <==
1
==> scatter.0000000187.tries <==
1
==> scatter.0000000188.tries <==
1
==> scatter.0000000189.tries <==
1
==> scatter.0000000190.tries <==
1
==> scatter.0000000191.tries <==
1
==> scatter.0000000192.tries <==
1
==> scatter.0000000193.tries <==
1
==> scatter.0000000194.tries <==
1
==> scatter.0000000195.tries <==
1
==> scatter.0000000196.tries <==
1
==> scatter.0000000197.tries <==
1
==> scatter.0000000198.tries <==
1
==> scatter.0000000199.tries <==
1
==> scatter.0000000200.tries <==
1


PS:

Read file <scatter-gather.err.txt> for stderr output of this job.

*** Scatter Gather stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Thu Oct 25 01:43:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 18640
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
ls: iteration1/sg-next-iteration.txt: No such file or directory


PS:

Read file <iterator.err.txt> for stderr output of this job.

